<snp_analysis>
<snp>
        <snp_id>cb2</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>23078</contig_pos>
        <strand>+</strand>
        <context>AAAAGGTGAA[A/C]WAATCAATAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAGAAATTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAA</left_flank>
        <right_flank>TAATCAATAAAAGACGGTCACAAAAATGTGTAATTGTCGATAAGGAGGAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTACAATACTTCATTGAGAGTTCTACCAACCTATTGGCAAGGTCCATTCGATCAATCACAGTTGGCCAGAGGTCATAGAGAAGTGGACGGGACACCTGGAAATTTGAAAATTTGTTAAAATAGAATACTGGATTTTTGGAAGAGGGTACTGTAAAACGGGATTTCGTATAGAACAAGATTGGGTTCCACAGCATTTTGATAACGGCTCCAGATGGCTTCGAAATCAATATTTCGAAAAAAGAAAATTTGGGCATCATCTCGCTGCTATTACGGATTATCTGTGAGAAGTTGAGGATTTTTGGTTCAGTAGGGACATCGTTAGAATCGGCAACCCGGGAACAAACGGACACACACACACACAAAAATAGAATTTGTTGATTGTTAATGGTAAGGATTGGCTTGAATTATCAAAATTTAGTAATGTTTCGACAGTTTTAGAACCAAATTCAAGAGAAATTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAACTAATCAATAAAAGACGGTCACAAAAATGTGTAATTGTCGATAAGGAGGATAAAGAAAAGAATAAATAAGTAGGCAGAATGGATCTCAGGAGAACTACCCCACCTGGTCTCACCTGTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCGTTTATGTGTGAAAGTGTGAAAATCTAGGTCACTTCCTTCCCAAGAGCATTCGTCTTATGCAATGCAAATCGTAGATGGGTGCATGGTCCCTGCAGGCGCAGTAATTTATTTCCAGATAAAACTATATTGATCTCAAAAGAAGAAAAAAAAGTTAAGAATTCCGGTTTTTCAGTTATCGGAGGACCGGCAAATTTGGCGTATCCATCAGAAATATCGACCAGAAGAATCATTGATAAACAAAAAAAAGTTGATTTTGAATGTTGACTTTAATAATAATTTATTTGATTCAGGACTATCAGTCACTTATAAAATCAATGTGTTA</canonical>
            <polymorphic>CTACAATACTTCATTGAGAGTTCTACCAACCTATTGGCAAGGTCCATTCGATCAATCACAGTTGGCCAGAGGTCATAGAGAAGTGGACGGGACACCTGGAAATTTGAAAATTTGTTAAAATAGAATACTGGATTTTTGGAAGAGGGTACTGTAAAACGGGATTTCGTATAGAACAAGATTGGGTTCCACAGCATTTTGATAACGGCTCCAGATGGCTTCGAAATCAATATTTCGAAAAAAGAAAATTTGGGCATCATCTCGCTGCTATTACGGATTATCTGTGAGAAGTTGAGGATTTTTGGTTCAGTAGGGACATCGTTAGAATCGGCAACCCGGGAACAAACGGACACACACACACACAAAAATAGAATTTGTTGATTGTTAATGGTAAGGATTGGCTTGAATTATCAAAATTTAGTAATGTTTCGACAGTTTTAGAACCAAATTCAAGAGAAATTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAAMTAATCAATAAAAGACGGTCACAAAAATGTGTAATTGTCGATAAGGAGGATAAAGAAAAGAATAAATAAGTAGGCAGAATGGATCTCAGGAGAACTACCCCACCTGGTCTCACCTGTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCGTTTATGTGTGAAAGTGTGAAAATCTAGGTCACTTCCTTCCCAAGAGCATTCGTCTTATGCAATGCAAATCGTAGATGGGTGCATGGTCCCTGCAGGCGCAGTAATTTATTTCCAGATAAAACTATATTGATCTCAAAAGAAGAAAAAAAAGTTAAGAATTCCGGTTTTTCAGTTATCGGAGGACCGGCAAATTTGGCGTATCCATCAGAAATATCGACCAGAAGAATCATTGATAAACAAAAAAAAGTTGATTTTGAATGTTGACTTTAATAATAATTTATTTGATTCAGGACTATCAGTCACTTATAAAATCAATGTGTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>443 412 85 60</canonical_bands>
                <polymorphic_bands>855 85 60</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTTAGAACCAAATTCAAGA</pcr_primer_p1>
		<pcr_primer_p2>CGGTACTGTCAGTCACACTATCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTTAGAACCAAATTCAAGAGAAATTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAACTAATCAATAAAAGACGGTCACAAAAATGTGTAATTGTCGATAAGGAGGATAAAGAAAAGAATAAATAAGTAGGCAGAATGGATCTCAGGAGAACTACCCCACCTGGTCTCACCTGTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTTAGAACCAAATTCAAGAGAAATTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAAMTAATCAATAAAAGACGGTCACAAAAATGTGTAATTGTCGATAAGGAGGATAAAGAAAAGAATAAATAAGTAGGCAGAATGGATCTCAGGAGAACTACCCCACCTGGTCTCACCTGTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>23079</contig_pos>
        <strand>+</strand>
        <context>AAAGGTGAAM[A/T]AATCAATAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGAAATTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAAC</left_flank>
        <right_flank>AATCAATAAAAGACGGTCACAAAAATGTGTAATTGTCGATAAGGAGGATA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACAATACTTCATTGAGAGTTCTACCAACCTATTGGCAAGGTCCATTCGATCAATCACAGTTGGCCAGAGGTCATAGAGAAGTGGACGGGACACCTGGAAATTTGAAAATTTGTTAAAATAGAATACTGGATTTTTGGAAGAGGGTACTGTAAAACGGGATTTCGTATAGAACAAGATTGGGTTCCACAGCATTTTGATAACGGCTCCAGATGGCTTCGAAATCAATATTTCGAAAAAAGAAAATTTGGGCATCATCTCGCTGCTATTACGGATTATCTGTGAGAAGTTGAGGATTTTTGGTTCAGTAGGGACATCGTTAGAATCGGCAACCCGGGAACAAACGGACACACACACACACAAAAATAGAATTTGTTGATTGTTAATGGTAAGGATTGGCTTGAATTATCAAAATTTAGTAATGTTTCGACAGTTTTAGAACCAAATTCAAGAGAAATTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAACTAATCAATAAAAGACGGTCACAAAAATGTGTAATTGTCGATAAGGAGGATAAAGAAAAGAATAAATAAGTAGGCAGAATGGATCTCAGGAGAACTACCCCACCTGGTCTCACCTGTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCGTTTATGTGTGAAAGTGTGAAAATCTAGGTCACTTCCTTCCCAAGAGCATTCGTCTTATGCAATGCAAATCGTAGATGGGTGCATGGTCCCTGCAGGCGCAGTAATTTATTTCCAGATAAAACTATATTGATCTCAAAAGAAGAAAAAAAAGTTAAGAATTCCGGTTTTTCAGTTATCGGAGGACCGGCAAATTTGGCGTATCCATCAGAAATATCGACCAGAAGAATCATTGATAAACAAAAAAAAGTTGATTTTGAATGTTGACTTTAATAATAATTTATTTGATTCAGGACTATCAGTCACTTATAAAATCAATGTGTTAC</canonical>
            <polymorphic>TACAATACTTCATTGAGAGTTCTACCAACCTATTGGCAAGGTCCATTCGATCAATCACAGTTGGCCAGAGGTCATAGAGAAGTGGACGGGACACCTGGAAATTTGAAAATTTGTTAAAATAGAATACTGGATTTTTGGAAGAGGGTACTGTAAAACGGGATTTCGTATAGAACAAGATTGGGTTCCACAGCATTTTGATAACGGCTCCAGATGGCTTCGAAATCAATATTTCGAAAAAAGAAAATTTGGGCATCATCTCGCTGCTATTACGGATTATCTGTGAGAAGTTGAGGATTTTTGGTTCAGTAGGGACATCGTTAGAATCGGCAACCCGGGAACAAACGGACACACACACACACAAAAATAGAATTTGTTGATTGTTAATGGTAAGGATTGGCTTGAATTATCAAAATTTAGTAATGTTTCGACAGTTTTAGAACCAAATTCAAGAGAAATTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAACWAATCAATAAAAGACGGTCACAAAAATGTGTAATTGTCGATAAGGAGGATAAAGAAAAGAATAAATAAGTAGGCAGAATGGATCTCAGGAGAACTACCCCACCTGGTCTCACCTGTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCGTTTATGTGTGAAAGTGTGAAAATCTAGGTCACTTCCTTCCCAAGAGCATTCGTCTTATGCAATGCAAATCGTAGATGGGTGCATGGTCCCTGCAGGCGCAGTAATTTATTTCCAGATAAAACTATATTGATCTCAAAAGAAGAAAAAAAAGTTAAGAATTCCGGTTTTTCAGTTATCGGAGGACCGGCAAATTTGGCGTATCCATCAGAAATATCGACCAGAAGAATCATTGATAAACAAAAAAAAGTTGATTTTGAATGTTGACTTTAATAATAATTTATTTGATTCAGGACTATCAGTCACTTATAAAATCAATGTGTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTTAGAACCAAATTCAAGA</pcr_primer_p1>
		<pcr_primer_p2>CGGTACTGTCAGTCACACTATCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTTAGAACCAAATTCAAGAGAAATTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAACTAATCAATAAAAGACGGTCACAAAAATGTGTAATTGTCGATAAGGAGGATAAAGAAAAGAATAAATAAGTAGGCAGAATGGATCTCAGGAGAACTACCCCACCTGGTCTCACCTGTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTTAGAACCAAATTCAAGAGAAATTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAACWAATCAATAAAAGACGGTCACAAAAATGTGTAATTGTCGATAAGGAGGATAAAGAAAAGAATAAATAAGTAGGCAGAATGGATCTCAGGAGAACTACCCCACCTGGTCTCACCTGTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>23111</contig_pos>
        <strand>+</strand>
        <context>AAAATGTGTA[A/C]YTGTCGATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGACTACAAAAGGTGAACTAATCAATAAAAGACGGTCACAAAAATGTGTA</left_flank>
        <right_flank>TTGTCGATAAGGAGGATAAAGAAAAGAATAAATAAGTAGGCAGAATGGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGCAAGGTCCATTCGATCAATCACAGTTGGCCAGAGGTCATAGAGAAGTGGACGGGACACCTGGAAATTTGAAAATTTGTTAAAATAGAATACTGGATTTTTGGAAGAGGGTACTGTAAAACGGGATTTCGTATAGAACAAGATTGGGTTCCACAGCATTTTGATAACGGCTCCAGATGGCTTCGAAATCAATATTTCGAAAAAAGAAAATTTGGGCATCATCTCGCTGCTATTACGGATTATCTGTGAGAAGTTGAGGATTTTTGGTTCAGTAGGGACATCGTTAGAATCGGCAACCCGGGAACAAACGGACACACACACACACAAAAATAGAATTTGTTGATTGTTAATGGTAAGGATTGGCTTGAATTATCAAAATTTAGTAATGTTTCGACAGTTTTAGAACCAAATTCAAGAGAAATTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAACTAATCAATAAAAGACGGTCACAAAAATGTGTAATTGTCGATAAGGAGGATAAAGAAAAGAATAAATAAGTAGGCAGAATGGATCTCAGGAGAACTACCCCACCTGGTCTCACCTGTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCGTTTATGTGTGAAAGTGTGAAAATCTAGGTCACTTCCTTCCCAAGAGCATTCGTCTTATGCAATGCAAATCGTAGATGGGTGCATGGTCCCTGCAGGCGCAGTAATTTATTTCCAGATAAAACTATATTGATCTCAAAAGAAGAAAAAAAAGTTAAGAATTCCGGTTTTTCAGTTATCGGAGGACCGGCAAATTTGGCGTATCCATCAGAAATATCGACCAGAAGAATCATTGATAAACAAAAAAAAGTTGATTTTGAATGTTGACTTTAATAATAATTTATTTGATTCAGGACTATCAGTCACTTATAAAATCAATGTGTTACAAATTAAACAAATGAGTTAGAAATTATGTTCG</canonical>
            <polymorphic>TTGGCAAGGTCCATTCGATCAATCACAGTTGGCCAGAGGTCATAGAGAAGTGGACGGGACACCTGGAAATTTGAAAATTTGTTAAAATAGAATACTGGATTTTTGGAAGAGGGTACTGTAAAACGGGATTTCGTATAGAACAAGATTGGGTTCCACAGCATTTTGATAACGGCTCCAGATGGCTTCGAAATCAATATTTCGAAAAAAGAAAATTTGGGCATCATCTCGCTGCTATTACGGATTATCTGTGAGAAGTTGAGGATTTTTGGTTCAGTAGGGACATCGTTAGAATCGGCAACCCGGGAACAAACGGACACACACACACACAAAAATAGAATTTGTTGATTGTTAATGGTAAGGATTGGCTTGAATTATCAAAATTTAGTAATGTTTCGACAGTTTTAGAACCAAATTCAAGAGAAATTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAACTAATCAATAAAAGACGGTCACAAAAATGTGTAMTTGTCGATAAGGAGGATAAAGAAAAGAATAAATAAGTAGGCAGAATGGATCTCAGGAGAACTACCCCACCTGGTCTCACCTGTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCGTTTATGTGTGAAAGTGTGAAAATCTAGGTCACTTCCTTCCCAAGAGCATTCGTCTTATGCAATGCAAATCGTAGATGGGTGCATGGTCCCTGCAGGCGCAGTAATTTATTTCCAGATAAAACTATATTGATCTCAAAAGAAGAAAAAAAAGTTAAGAATTCCGGTTTTTCAGTTATCGGAGGACCGGCAAATTTGGCGTATCCATCAGAAATATCGACCAGAAGAATCATTGATAAACAAAAAAAAGTTGATTTTGAATGTTGACTTTAATAATAATTTATTTGATTCAGGACTATCAGTCACTTATAAAATCAATGTGTTACAAATTAAACAAATGAGTTAGAAATTATGTTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>249 135 125 85 77 67 54 50 34 33 32 20 11 11 9 8</canonical_bands>
                <polymorphic_bands>326 135 125 85 67 54 50 34 33 32 20 11 11 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTTAGAACCAAATTCAAGA</pcr_primer_p1>
		<pcr_primer_p2>CGGTACTGTCAGTCACACTATCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTTAGAACCAAATTCAAGAGAAATTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAACTAATCAATAAAAGACGGTCACAAAAATGTGTAATTGTCGATAAGGAGGATAAAGAAAAGAATAAATAAGTAGGCAGAATGGATCTCAGGAGAACTACCCCACCTGGTCTCACCTGTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTTAGAACCAAATTCAAGAGAAATTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAACTAATCAATAAAAGACGGTCACAAAAATGTGTAMTTGTCGATAAGGAGGATAAAGAAAAGAATAAATAAGTAGGCAGAATGGATCTCAGGAGAACTACCCCACCTGGTCTCACCTGTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>23112</contig_pos>
        <strand>+</strand>
        <context>AAATGTGTAM[C/T]TGTCGATAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACTACAAAAGGTGAACTAATCAATAAAAGACGGTCACAAAAATGTGTAA</left_flank>
        <right_flank>TGTCGATAAGGAGGATAAAGAAAAGAATAAATAAGTAGGCAGAATGGATC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGCAAGGTCCATTCGATCAATCACAGTTGGCCAGAGGTCATAGAGAAGTGGACGGGACACCTGGAAATTTGAAAATTTGTTAAAATAGAATACTGGATTTTTGGAAGAGGGTACTGTAAAACGGGATTTCGTATAGAACAAGATTGGGTTCCACAGCATTTTGATAACGGCTCCAGATGGCTTCGAAATCAATATTTCGAAAAAAGAAAATTTGGGCATCATCTCGCTGCTATTACGGATTATCTGTGAGAAGTTGAGGATTTTTGGTTCAGTAGGGACATCGTTAGAATCGGCAACCCGGGAACAAACGGACACACACACACACAAAAATAGAATTTGTTGATTGTTAATGGTAAGGATTGGCTTGAATTATCAAAATTTAGTAATGTTTCGACAGTTTTAGAACCAAATTCAAGAGAAATTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAACTAATCAATAAAAGACGGTCACAAAAATGTGTAATTGTCGATAAGGAGGATAAAGAAAAGAATAAATAAGTAGGCAGAATGGATCTCAGGAGAACTACCCCACCTGGTCTCACCTGTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCGTTTATGTGTGAAAGTGTGAAAATCTAGGTCACTTCCTTCCCAAGAGCATTCGTCTTATGCAATGCAAATCGTAGATGGGTGCATGGTCCCTGCAGGCGCAGTAATTTATTTCCAGATAAAACTATATTGATCTCAAAAGAAGAAAAAAAAGTTAAGAATTCCGGTTTTTCAGTTATCGGAGGACCGGCAAATTTGGCGTATCCATCAGAAATATCGACCAGAAGAATCATTGATAAACAAAAAAAAGTTGATTTTGAATGTTGACTTTAATAATAATTTATTTGATTCAGGACTATCAGTCACTTATAAAATCAATGTGTTACAAATTAAACAAATGAGTTAGAAATTATGTTCGT</canonical>
            <polymorphic>TGGCAAGGTCCATTCGATCAATCACAGTTGGCCAGAGGTCATAGAGAAGTGGACGGGACACCTGGAAATTTGAAAATTTGTTAAAATAGAATACTGGATTTTTGGAAGAGGGTACTGTAAAACGGGATTTCGTATAGAACAAGATTGGGTTCCACAGCATTTTGATAACGGCTCCAGATGGCTTCGAAATCAATATTTCGAAAAAAGAAAATTTGGGCATCATCTCGCTGCTATTACGGATTATCTGTGAGAAGTTGAGGATTTTTGGTTCAGTAGGGACATCGTTAGAATCGGCAACCCGGGAACAAACGGACACACACACACACAAAAATAGAATTTGTTGATTGTTAATGGTAAGGATTGGCTTGAATTATCAAAATTTAGTAATGTTTCGACAGTTTTAGAACCAAATTCAAGAGAAATTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAACTAATCAATAAAAGACGGTCACAAAAATGTGTAAYTGTCGATAAGGAGGATAAAGAAAAGAATAAATAAGTAGGCAGAATGGATCTCAGGAGAACTACCCCACCTGGTCTCACCTGTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCGTTTATGTGTGAAAGTGTGAAAATCTAGGTCACTTCCTTCCCAAGAGCATTCGTCTTATGCAATGCAAATCGTAGATGGGTGCATGGTCCCTGCAGGCGCAGTAATTTATTTCCAGATAAAACTATATTGATCTCAAAAGAAGAAAAAAAAGTTAAGAATTCCGGTTTTTCAGTTATCGGAGGACCGGCAAATTTGGCGTATCCATCAGAAATATCGACCAGAAGAATCATTGATAAACAAAAAAAAGTTGATTTTGAATGTTGACTTTAATAATAATTTATTTGATTCAGGACTATCAGTCACTTATAAAATCAATGTGTTACAAATTAAACAAATGAGTTAGAAATTATGTTCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>249 135 125 85 77 66 54 50 34 33 32 20 12 11 9 8</canonical_bands>
                <polymorphic_bands>326 135 125 85 66 54 50 34 33 32 20 12 11 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTTAGAACCAAATTCAAGA</pcr_primer_p1>
		<pcr_primer_p2>CGGTACTGTCAGTCACACTATCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTTAGAACCAAATTCAAGAGAAATTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAACTAATCAATAAAAGACGGTCACAAAAATGTGTAATTGTCGATAAGGAGGATAAAGAAAAGAATAAATAAGTAGGCAGAATGGATCTCAGGAGAACTACCCCACCTGGTCTCACCTGTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTTAGAACCAAATTCAAGAGAAATTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAACTAATCAATAAAAGACGGTCACAAAAATGTGTAAYTGTCGATAAGGAGGATAAAGAAAAGAATAAATAAGTAGGCAGAATGGATCTCAGGAGAACTACCCCACCTGGTCTCACCTGTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>23258</contig_pos>
        <strand>+</strand>
        <context>ACAGTACCGT[A/T]TATGTGTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCGT</left_flank>
        <right_flank>TATGTGTGAAAGTGTGAAAATCTAGGTCACTTCCTTCCCAAGAGCATTCG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGTTCCACAGCATTTTGATAACGGCTCCAGATGGCTTCGAAATCAATATTTCGAAAAAAGAAAATTTGGGCATCATCTCGCTGCTATTACGGATTATCTGTGAGAAGTTGAGGATTTTTGGTTCAGTAGGGACATCGTTAGAATCGGCAACCCGGGAACAAACGGACACACACACACACAAAAATAGAATTTGTTGATTGTTAATGGTAAGGATTGGCTTGAATTATCAAAATTTAGTAATGTTTCGACAGTTTTAGAACCAAATTCAAGAGAAATTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAACTAATCAATAAAAGACGGTCACAAAAATGTGTAATTGTCGATAAGGAGGATAAAGAAAAGAATAAATAAGTAGGCAGAATGGATCTCAGGAGAACTACCCCACCTGGTCTCACCTGTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCGTTTATGTGTGAAAGTGTGAAAATCTAGGTCACTTCCTTCCCAAGAGCATTCGTCTTATGCAATGCAAATCGTAGATGGGTGCATGGTCCCTGCAGGCGCAGTAATTTATTTCCAGATAAAACTATATTGATCTCAAAAGAAGAAAAAAAAGTTAAGAATTCCGGTTTTTCAGTTATCGGAGGACCGGCAAATTTGGCGTATCCATCAGAAATATCGACCAGAAGAATCATTGATAAACAAAAAAAAGTTGATTTTGAATGTTGACTTTAATAATAATTTATTTGATTCAGGACTATCAGTCACTTATAAAATCAATGTGTTACAAATTAAACAAATGAGTTAGAAATTATGTTCGTCTAGGAACAGGAAAGAAGATAAATTAAATTAGTTTTAAAAGAGATGGATGAAATCAAGGGTGGGAACACGGTTTTTGGAAGCGAGTTCCAGCAGGATATAATACGGAGAGTAAGAAATTGAGCAGAAAGTTTTGAAGCATTTTTAA</canonical>
            <polymorphic>GGGTTCCACAGCATTTTGATAACGGCTCCAGATGGCTTCGAAATCAATATTTCGAAAAAAGAAAATTTGGGCATCATCTCGCTGCTATTACGGATTATCTGTGAGAAGTTGAGGATTTTTGGTTCAGTAGGGACATCGTTAGAATCGGCAACCCGGGAACAAACGGACACACACACACACAAAAATAGAATTTGTTGATTGTTAATGGTAAGGATTGGCTTGAATTATCAAAATTTAGTAATGTTTCGACAGTTTTAGAACCAAATTCAAGAGAAATTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAACTAATCAATAAAAGACGGTCACAAAAATGTGTAATTGTCGATAAGGAGGATAAAGAAAAGAATAAATAAGTAGGCAGAATGGATCTCAGGAGAACTACCCCACCTGGTCTCACCTGTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCGTWTATGTGTGAAAGTGTGAAAATCTAGGTCACTTCCTTCCCAAGAGCATTCGTCTTATGCAATGCAAATCGTAGATGGGTGCATGGTCCCTGCAGGCGCAGTAATTTATTTCCAGATAAAACTATATTGATCTCAAAAGAAGAAAAAAAAGTTAAGAATTCCGGTTTTTCAGTTATCGGAGGACCGGCAAATTTGGCGTATCCATCAGAAATATCGACCAGAAGAATCATTGATAAACAAAAAAAAGTTGATTTTGAATGTTGACTTTAATAATAATTTATTTGATTCAGGACTATCAGTCACTTATAAAATCAATGTGTTACAAATTAAACAAATGAGTTAGAAATTATGTTCGTCTAGGAACAGGAAAGAAGATAAATTAAATTAGTTTTAAAAGAGATGGATGAAATCAAGGGTGGGAACACGGTTTTTGGAAGCGAGTTCCAGCAGGATATAATACGGAGAGTAAGAAATTGAGCAGAAAGTTTTGAAGCATTTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTTCAGAATGTCCTTGATTC</pcr_primer_p1>
		<pcr_primer_p2>GTCCTCCGATAACTGAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCGTTTATGTGTGAAAGTGTGAAAATCTAGGTCACTTCCTTCCCAAGAGCATTCGTCTTATGCAATGCAAATCGTAGATGGGTGCATGGTCCCTGCAGGCGCAGTAATTTATTTCCAGATAAAACTATATTGATCTCAAAAGAAGAAAAAAAAGTTAAGAATTCCGGTTTTTCAGTTATCGGAGGAC</canonical_amplicon>
		<polymorphic_amplicon>GTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCGTWTATGTGTGAAAGTGTGAAAATCTAGGTCACTTCCTTCCCAAGAGCATTCGTCTTATGCAATGCAAATCGTAGATGGGTGCATGGTCCCTGCAGGCGCAGTAATTTATTTCCAGATAAAACTATATTGATCTCAAAAGAAGAAAAAAAAGTTAAGAATTCCGGTTTTTCAGTTATCGGAGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>23274</contig_pos>
        <strand>+</strand>
        <context>GTGAAAGTGT[G/T]MAAATCTAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCATACATTAGATAGTGTGACTGACAGTACCGTTTATGTGTGAAAGTGT</left_flank>
        <right_flank>AAAATCTAGGTCACTTCCTTCCCAAGAGCATTCGTCTTATGCAATGCAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATAACGGCTCCAGATGGCTTCGAAATCAATATTTCGAAAAAAGAAAATTTGGGCATCATCTCGCTGCTATTACGGATTATCTGTGAGAAGTTGAGGATTTTTGGTTCAGTAGGGACATCGTTAGAATCGGCAACCCGGGAACAAACGGACACACACACACACAAAAATAGAATTTGTTGATTGTTAATGGTAAGGATTGGCTTGAATTATCAAAATTTAGTAATGTTTCGACAGTTTTAGAACCAAATTCAAGAGAAATTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAACTAATCAATAAAAGACGGTCACAAAAATGTGTAATTGTCGATAAGGAGGATAAAGAAAAGAATAAATAAGTAGGCAGAATGGATCTCAGGAGAACTACCCCACCTGGTCTCACCTGTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCGTTTATGTGTGAAAGTGTGAAAATCTAGGTCACTTCCTTCCCAAGAGCATTCGTCTTATGCAATGCAAATCGTAGATGGGTGCATGGTCCCTGCAGGCGCAGTAATTTATTTCCAGATAAAACTATATTGATCTCAAAAGAAGAAAAAAAAGTTAAGAATTCCGGTTTTTCAGTTATCGGAGGACCGGCAAATTTGGCGTATCCATCAGAAATATCGACCAGAAGAATCATTGATAAACAAAAAAAAGTTGATTTTGAATGTTGACTTTAATAATAATTTATTTGATTCAGGACTATCAGTCACTTATAAAATCAATGTGTTACAAATTAAACAAATGAGTTAGAAATTATGTTCGTCTAGGAACAGGAAAGAAGATAAATTAAATTAGTTTTAAAAGAGATGGATGAAATCAAGGGTGGGAACACGGTTTTTGGAAGCGAGTTCCAGCAGGATATAATACGGAGAGTAAGAAATTGAGCAGAAAGTTTTGAAGCATTTTTAAATGTACAGCGAATGTA</canonical>
            <polymorphic>TGATAACGGCTCCAGATGGCTTCGAAATCAATATTTCGAAAAAAGAAAATTTGGGCATCATCTCGCTGCTATTACGGATTATCTGTGAGAAGTTGAGGATTTTTGGTTCAGTAGGGACATCGTTAGAATCGGCAACCCGGGAACAAACGGACACACACACACACAAAAATAGAATTTGTTGATTGTTAATGGTAAGGATTGGCTTGAATTATCAAAATTTAGTAATGTTTCGACAGTTTTAGAACCAAATTCAAGAGAAATTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAACTAATCAATAAAAGACGGTCACAAAAATGTGTAATTGTCGATAAGGAGGATAAAGAAAAGAATAAATAAGTAGGCAGAATGGATCTCAGGAGAACTACCCCACCTGGTCTCACCTGTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCGTTTATGTGTGAAAGTGTKAAAATCTAGGTCACTTCCTTCCCAAGAGCATTCGTCTTATGCAATGCAAATCGTAGATGGGTGCATGGTCCCTGCAGGCGCAGTAATTTATTTCCAGATAAAACTATATTGATCTCAAAAGAAGAAAAAAAAGTTAAGAATTCCGGTTTTTCAGTTATCGGAGGACCGGCAAATTTGGCGTATCCATCAGAAATATCGACCAGAAGAATCATTGATAAACAAAAAAAAGTTGATTTTGAATGTTGACTTTAATAATAATTTATTTGATTCAGGACTATCAGTCACTTATAAAATCAATGTGTTACAAATTAAACAAATGAGTTAGAAATTATGTTCGTCTAGGAACAGGAAAGAAGATAAATTAAATTAGTTTTAAAAGAGATGGATGAAATCAAGGGTGGGAACACGGTTTTTGGAAGCGAGTTCCAGCAGGATATAATACGGAGAGTAAGAAATTGAGCAGAAAGTTTTGAAGCATTTTTAAATGTACAGCGAATGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>221 138 99 94 87 71 66 52 50 23 21 17 13 10 10 6 6 2 2 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>221 138 99 94 87 71 66 52 50 23 21 17 15 10 10 6 6 2 2 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTTCAGAATGTCCTTGATTC</pcr_primer_p1>
		<pcr_primer_p2>GTCCTCCGATAACTGAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCGTTTATGTGTGAAAGTGTGAAAATCTAGGTCACTTCCTTCCCAAGAGCATTCGTCTTATGCAATGCAAATCGTAGATGGGTGCATGGTCCCTGCAGGCGCAGTAATTTATTTCCAGATAAAACTATATTGATCTCAAAAGAAGAAAAAAAAGTTAAGAATTCCGGTTTTTCAGTTATCGGAGGAC</canonical_amplicon>
		<polymorphic_amplicon>GTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCGTTTATGTGTGAAAGTGTKAAAATCTAGGTCACTTCCTTCCCAAGAGCATTCGTCTTATGCAATGCAAATCGTAGATGGGTGCATGGTCCCTGCAGGCGCAGTAATTTATTTCCAGATAAAACTATATTGATCTCAAAAGAAGAAAAAAAAGTTAAGAATTCCGGTTTTTCAGTTATCGGAGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>23275</contig_pos>
        <strand>+</strand>
        <context>TGAAAGTGTK[A/C]AAATCTAGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCATACATTAGATAGTGTGACTGACAGTACCGTTTATGTGTGAAAGTGTG</left_flank>
        <right_flank>AAATCTAGGTCACTTCCTTCCCAAGAGCATTCGTCTTATGCAATGCAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAACGGCTCCAGATGGCTTCGAAATCAATATTTCGAAAAAAGAAAATTTGGGCATCATCTCGCTGCTATTACGGATTATCTGTGAGAAGTTGAGGATTTTTGGTTCAGTAGGGACATCGTTAGAATCGGCAACCCGGGAACAAACGGACACACACACACACAAAAATAGAATTTGTTGATTGTTAATGGTAAGGATTGGCTTGAATTATCAAAATTTAGTAATGTTTCGACAGTTTTAGAACCAAATTCAAGAGAAATTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAACTAATCAATAAAAGACGGTCACAAAAATGTGTAATTGTCGATAAGGAGGATAAAGAAAAGAATAAATAAGTAGGCAGAATGGATCTCAGGAGAACTACCCCACCTGGTCTCACCTGTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCGTTTATGTGTGAAAGTGTGAAAATCTAGGTCACTTCCTTCCCAAGAGCATTCGTCTTATGCAATGCAAATCGTAGATGGGTGCATGGTCCCTGCAGGCGCAGTAATTTATTTCCAGATAAAACTATATTGATCTCAAAAGAAGAAAAAAAAGTTAAGAATTCCGGTTTTTCAGTTATCGGAGGACCGGCAAATTTGGCGTATCCATCAGAAATATCGACCAGAAGAATCATTGATAAACAAAAAAAAGTTGATTTTGAATGTTGACTTTAATAATAATTTATTTGATTCAGGACTATCAGTCACTTATAAAATCAATGTGTTACAAATTAAACAAATGAGTTAGAAATTATGTTCGTCTAGGAACAGGAAAGAAGATAAATTAAATTAGTTTTAAAAGAGATGGATGAAATCAAGGGTGGGAACACGGTTTTTGGAAGCGAGTTCCAGCAGGATATAATACGGAGAGTAAGAAATTGAGCAGAAAGTTTTGAAGCATTTTTAAATGTACAGCGAATGTAA</canonical>
            <polymorphic>GATAACGGCTCCAGATGGCTTCGAAATCAATATTTCGAAAAAAGAAAATTTGGGCATCATCTCGCTGCTATTACGGATTATCTGTGAGAAGTTGAGGATTTTTGGTTCAGTAGGGACATCGTTAGAATCGGCAACCCGGGAACAAACGGACACACACACACACAAAAATAGAATTTGTTGATTGTTAATGGTAAGGATTGGCTTGAATTATCAAAATTTAGTAATGTTTCGACAGTTTTAGAACCAAATTCAAGAGAAATTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAACTAATCAATAAAAGACGGTCACAAAAATGTGTAATTGTCGATAAGGAGGATAAAGAAAAGAATAAATAAGTAGGCAGAATGGATCTCAGGAGAACTACCCCACCTGGTCTCACCTGTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCGTTTATGTGTGAAAGTGTGMAAATCTAGGTCACTTCCTTCCCAAGAGCATTCGTCTTATGCAATGCAAATCGTAGATGGGTGCATGGTCCCTGCAGGCGCAGTAATTTATTTCCAGATAAAACTATATTGATCTCAAAAGAAGAAAAAAAAGTTAAGAATTCCGGTTTTTCAGTTATCGGAGGACCGGCAAATTTGGCGTATCCATCAGAAATATCGACCAGAAGAATCATTGATAAACAAAAAAAAGTTGATTTTGAATGTTGACTTTAATAATAATTTATTTGATTCAGGACTATCAGTCACTTATAAAATCAATGTGTTACAAATTAAACAAATGAGTTAGAAATTATGTTCGTCTAGGAACAGGAAAGAAGATAAATTAAATTAGTTTTAAAAGAGATGGATGAAATCAAGGGTGGGAACACGGTTTTTGGAAGCGAGTTCCAGCAGGATATAATACGGAGAGTAAGAAATTGAGCAGAAAGTTTTGAAGCATTTTTAAATGTACAGCGAATGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTTCAGAATGTCCTTGATTC</pcr_primer_p1>
		<pcr_primer_p2>GTCCTCCGATAACTGAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCGTTTATGTGTGAAAGTGTGAAAATCTAGGTCACTTCCTTCCCAAGAGCATTCGTCTTATGCAATGCAAATCGTAGATGGGTGCATGGTCCCTGCAGGCGCAGTAATTTATTTCCAGATAAAACTATATTGATCTCAAAAGAAGAAAAAAAAGTTAAGAATTCCGGTTTTTCAGTTATCGGAGGAC</canonical_amplicon>
		<polymorphic_amplicon>GTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCGTTTATGTGTGAAAGTGTGMAAATCTAGGTCACTTCCTTCCCAAGAGCATTCGTCTTATGCAATGCAAATCGTAGATGGGTGCATGGTCCCTGCAGGCGCAGTAATTTATTTCCAGATAAAACTATATTGATCTCAAAAGAAGAAAAAAAAGTTAAGAATTCCGGTTTTTCAGTTATCGGAGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>23373</contig_pos>
        <strand>+</strand>
        <context>TATTTCCAGA[C/T]AAAACTATAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCGTAGATGGGTGCATGGTCCCTGCAGGCGCAGTAATTTATTTCCAGA</left_flank>
        <right_flank>AAAACTATATTGATCTCAAAAGAAGAAAAAAAAGTTAAGAATTCCGGTTT</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGGTTCAGTAGGGACATCGTTAGAATCGGCAACCCGGGAACAAACGGACACACACACACACAAAAATAGAATTTGTTGATTGTTAATGGTAAGGATTGGCTTGAATTATCAAAATTTAGTAATGTTTCGACAGTTTTAGAACCAAATTCAAGAGAAATTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAACTAATCAATAAAAGACGGTCACAAAAATGTGTAATTGTCGATAAGGAGGATAAAGAAAAGAATAAATAAGTAGGCAGAATGGATCTCAGGAGAACTACCCCACCTGGTCTCACCTGTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCGTTTATGTGTGAAAGTGTGAAAATCTAGGTCACTTCCTTCCCAAGAGCATTCGTCTTATGCAATGCAAATCGTAGATGGGTGCATGGTCCCTGCAGGCGCAGTAATTTATTTCCAGATAAAACTATATTGATCTCAAAAGAAGAAAAAAAAGTTAAGAATTCCGGTTTTTCAGTTATCGGAGGACCGGCAAATTTGGCGTATCCATCAGAAATATCGACCAGAAGAATCATTGATAAACAAAAAAAAGTTGATTTTGAATGTTGACTTTAATAATAATTTATTTGATTCAGGACTATCAGTCACTTATAAAATCAATGTGTTACAAATTAAACAAATGAGTTAGAAATTATGTTCGTCTAGGAACAGGAAAGAAGATAAATTAAATTAGTTTTAAAAGAGATGGATGAAATCAAGGGTGGGAACACGGTTTTTGGAAGCGAGTTCCAGCAGGATATAATACGGAGAGTAAGAAATTGAGCAGAAAGTTTTGAAGCATTTTTAAATGTACAGCGAATGTAATATGGGTGGCGTCTTAGATGGTTATGATGAAACGGGACAATGAATAGATTATGGGCAATTGCAATTTCCCGGGAAACTAGAGTTTTATACATACAAAC</canonical>
            <polymorphic>TTTTTGGTTCAGTAGGGACATCGTTAGAATCGGCAACCCGGGAACAAACGGACACACACACACACAAAAATAGAATTTGTTGATTGTTAATGGTAAGGATTGGCTTGAATTATCAAAATTTAGTAATGTTTCGACAGTTTTAGAACCAAATTCAAGAGAAATTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAACTAATCAATAAAAGACGGTCACAAAAATGTGTAATTGTCGATAAGGAGGATAAAGAAAAGAATAAATAAGTAGGCAGAATGGATCTCAGGAGAACTACCCCACCTGGTCTCACCTGTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCGTTTATGTGTGAAAGTGTGAAAATCTAGGTCACTTCCTTCCCAAGAGCATTCGTCTTATGCAATGCAAATCGTAGATGGGTGCATGGTCCCTGCAGGCGCAGTAATTTATTTCCAGAYAAAACTATATTGATCTCAAAAGAAGAAAAAAAAGTTAAGAATTCCGGTTTTTCAGTTATCGGAGGACCGGCAAATTTGGCGTATCCATCAGAAATATCGACCAGAAGAATCATTGATAAACAAAAAAAAGTTGATTTTGAATGTTGACTTTAATAATAATTTATTTGATTCAGGACTATCAGTCACTTATAAAATCAATGTGTTACAAATTAAACAAATGAGTTAGAAATTATGTTCGTCTAGGAACAGGAAAGAAGATAAATTAAATTAGTTTTAAAAGAGATGGATGAAATCAAGGGTGGGAACACGGTTTTTGGAAGCGAGTTCCAGCAGGATATAATACGGAGAGTAAGAAATTGAGCAGAAAGTTTTGAAGCATTTTTAAATGTACAGCGAATGTAATATGGGTGGCGTCTTAGATGGTTATGATGAAACGGGACAATGAATAGATTATGGGCAATTGCAATTTCCCGGGAAACTAGAGTTTTATACATACAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTATGCAATGCAAATCGTAG</pcr_primer_p1>
		<pcr_primer_p2>TGACTGATAGTCCTGAATCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTATGCAATGCAAATCGTAGATGGGTGCATGGTCCCTGCAGGCGCAGTAATTTATTTCCAGATAAAACTATATTGATCTCAAAAGAAGAAAAAAAAGTTAAGAATTCCGGTTTTTCAGTTATCGGAGGACCGGCAAATTTGGCGTATCCATCAGAAATATCGACCAGAAGAATCATTGATAAACAAAAAAAAGTTGATTTTGAATGTTGACTTTAATAATAATTTATTTGATTCAGGACTATCAGTCA</canonical_amplicon>
		<polymorphic_amplicon>CTTATGCAATGCAAATCGTAGATGGGTGCATGGTCCCTGCAGGCGCAGTAATTTATTTCCAGAYAAAACTATATTGATCTCAAAAGAAGAAAAAAAAGTTAAGAATTCCGGTTTTTCAGTTATCGGAGGACCGGCAAATTTGGCGTATCCATCAGAAATATCGACCAGAAGAATCATTGATAAACAAAAAAAAGTTGATTTTGAATGTTGACTTTAATAATAATTTATTTGATTCAGGACTATCAGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>23498</contig_pos>
        <strand>+</strand>
        <context>GATAAACAAA[A/T]AAAAGTTGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGGCGTATCCATCAGAAATATCGACCAGAAGAATCATTGATAAACAAA</left_flank>
        <right_flank>AAAAGTTGATTTTGAATGTTGACTTTAATAATAATTTATTTGATTCAGGA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTTTCGACAGTTTTAGAACCAAATTCAAGAGAAATTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAACTAATCAATAAAAGACGGTCACAAAAATGTGTAATTGTCGATAAGGAGGATAAAGAAAAGAATAAATAAGTAGGCAGAATGGATCTCAGGAGAACTACCCCACCTGGTCTCACCTGTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCGTTTATGTGTGAAAGTGTGAAAATCTAGGTCACTTCCTTCCCAAGAGCATTCGTCTTATGCAATGCAAATCGTAGATGGGTGCATGGTCCCTGCAGGCGCAGTAATTTATTTCCAGATAAAACTATATTGATCTCAAAAGAAGAAAAAAAAGTTAAGAATTCCGGTTTTTCAGTTATCGGAGGACCGGCAAATTTGGCGTATCCATCAGAAATATCGACCAGAAGAATCATTGATAAACAAAAAAAAGTTGATTTTGAATGTTGACTTTAATAATAATTTATTTGATTCAGGACTATCAGTCACTTATAAAATCAATGTGTTACAAATTAAACAAATGAGTTAGAAATTATGTTCGTCTAGGAACAGGAAAGAAGATAAATTAAATTAGTTTTAAAAGAGATGGATGAAATCAAGGGTGGGAACACGGTTTTTGGAAGCGAGTTCCAGCAGGATATAATACGGAGAGTAAGAAATTGAGCAGAAAGTTTTGAAGCATTTTTAAATGTACAGCGAATGTAATATGGGTGGCGTCTTAGATGGTTATGATGAAACGGGACAATGAATAGATTATGGGCAATTGCAATTTCCCGGGAAACTAGAGTTTTATACATACAAACTAGATCGGATAGAAGTCGACGGTACTCTAAGGATTCTAAATTGTGTTCACGGAGACAATCAAAGTAAGATATATAGGGATAGTTGAACTTCTTGTAACATCGGAACAGGAATGACTTTTGGACGC</canonical>
            <polymorphic>ATGTTTCGACAGTTTTAGAACCAAATTCAAGAGAAATTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAACTAATCAATAAAAGACGGTCACAAAAATGTGTAATTGTCGATAAGGAGGATAAAGAAAAGAATAAATAAGTAGGCAGAATGGATCTCAGGAGAACTACCCCACCTGGTCTCACCTGTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCGTTTATGTGTGAAAGTGTGAAAATCTAGGTCACTTCCTTCCCAAGAGCATTCGTCTTATGCAATGCAAATCGTAGATGGGTGCATGGTCCCTGCAGGCGCAGTAATTTATTTCCAGATAAAACTATATTGATCTCAAAAGAAGAAAAAAAAGTTAAGAATTCCGGTTTTTCAGTTATCGGAGGACCGGCAAATTTGGCGTATCCATCAGAAATATCGACCAGAAGAATCATTGATAAACAAAWAAAAGTTGATTTTGAATGTTGACTTTAATAATAATTTATTTGATTCAGGACTATCAGTCACTTATAAAATCAATGTGTTACAAATTAAACAAATGAGTTAGAAATTATGTTCGTCTAGGAACAGGAAAGAAGATAAATTAAATTAGTTTTAAAAGAGATGGATGAAATCAAGGGTGGGAACACGGTTTTTGGAAGCGAGTTCCAGCAGGATATAATACGGAGAGTAAGAAATTGAGCAGAAAGTTTTGAAGCATTTTTAAATGTACAGCGAATGTAATATGGGTGGCGTCTTAGATGGTTATGATGAAACGGGACAATGAATAGATTATGGGCAATTGCAATTTCCCGGGAAACTAGAGTTTTATACATACAAACTAGATCGGATAGAAGTCGACGGTACTCTAAGGATTCTAAATTGTGTTCACGGAGACAATCAAAGTAAGATATATAGGGATAGTTGAACTTCTTGTAACATCGGAACAGGAATGACTTTTGGACGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTTCAGTTATCGGAGGAC</pcr_primer_p1>
		<pcr_primer_p2>CTTGATTTCATCCATCTCTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTTTTTCAGTTATCGGAGGACCGGCAAATTTGGCGTATCCATCAGAAATATCGACCAGAAGAATCATTGATAAACAAAAAAAAGTTGATTTTGAATGTTGACTTTAATAATAATTTATTTGATTCAGGACTATCAGTCACTTATAAAATCAATGTGTTACAAATTAAACAAATGAGTTAGAAATTATGTTCGTCTAGGAACAGGAAAGAAGATAAATTAAATTAGTTTTAAAAGAGATGGATGAAATCAAG</canonical_amplicon>
		<polymorphic_amplicon>GTTTTTCAGTTATCGGAGGACCGGCAAATTTGGCGTATCCATCAGAAATATCGACCAGAAGAATCATTGATAAACAAAWAAAAGTTGATTTTGAATGTTGACTTTAATAATAATTTATTTGATTCAGGACTATCAGTCACTTATAAAATCAATGTGTTACAAATTAAACAAATGAGTTAGAAATTATGTTCGTCTAGGAACAGGAAAGAAGATAAATTAAATTAGTTTTAAAAGAGATGGATGAAATCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>25772</contig_pos>
        <strand>+</strand>
        <context>TGARACTCTG[C/T]GTTCAAAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCTGTCGGTTCTCGGAGATTTGAATTTCCCGCCAAATTTGAAACTCTG</left_flank>
        <right_flank>GTTCAAAACTTGAAAGTTGCGAGACCTTACTGTGACTTTCAAGAGGACGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTATTGTGTACCGTTTGCATATGAGCCCATTCTTAACTTTCTAATTTCCAGACAGAAATATGTCCCGACCACTTATCTTTGACCTCTGGCCAACTGTGATGGATCGAATGGATCTTGCTAACAGGTTAGTATTATATTTCAAGCAATTATTGTTTAATAGAGCGCATTTTCCAGAATCCTCCTCACCCAAAAATATCCAGAATTCCGTGGAACCGATCAACGATGCTCAGCTAAAGCCACCACCGTTGAGATCACAACGAATAGTGTCAAAATCAATAACACCAGCTTCTACGTCGAAAAATATGAATCTGGAGAACACATGGAGGTTTTCCAAGACGGCGGAAAGTCTAAGGCGGTGGTTCTTAAGACTACCGTACCCCTACGTGAAGCTAAGAAGAAGCTGTTCGGAACGATTTTGAAGAGAAGATCAGGAATTTTGAAAGTAAAGAATCTGTCGGTTCTCGGAGATTTGAATTTCCCGCCAAATTTGAAACTCTGTGTTCAAAACTTGAAAGTTGCGAGACCTTACTGTGACTTTCAAGAGGACGATATGATCAAGCAAATTAGAACATCAACGCTTTACAACGATCTTCAGAAGGTTCTAACAGCAGACAGCTTCCCATTGGAATCTCTTGAAATGGATTACAATTTCTCAGTGAGATTAGATGCTCCAGCAAAAACCGTAGTCCTCGTCGGACAGGCATTCGGTATCGAGGCCTCTGATATTCATAGAATCCATGTCAAAAACTGTAATATGAATTGGATGAATGTGATTGATCTGGTGGGAAGGTGGCGAATGGTGCAGCCAGAGATCGGAAGACATTACTCATTGGAAACTGGACGCGGTGATGGGCTATTGGATATTTCACAGCTGCTGAAATGTCTCCGGGAAGAGGGAAGAATTTTAAGTTGTAAGTTTTCGGGAATCAAAGTTCTCAAAAAATCGGTTTTATTTTCAGTGCCAACGACTTGTACACATATGGTTTCACTTTTTCGATC</canonical>
            <polymorphic>TTTATTGTGTACCGTTTGCATATGAGCCCATTCTTAACTTTCTAATTTCCAGACAGAAATATGTCCCGACCACTTATCTTTGACCTCTGGCCAACTGTGATGGATCGAATGGATCTTGCTAACAGGTTAGTATTATATTTCAAGCAATTATTGTTTAATAGAGCGCATTTTCCAGAATCCTCCTCACCCAAAAATATCCAGAATTCCGTGGAACCGATCAACGATGCTCAGCTAAAGCCACCACCGTTGAGATCACAACGAATAGTGTCAAAATCAATAACACCAGCTTCTACGTCGAAAAATATGAATCTGGAGAACACATGGAGGTTTTCCAAGACGGCGGAAAGTCTAAGGCGGTGGTTCTTAAGACTACCGTACCCCTACGTGAAGCTAAGAAGAAGCTGTTCGGAACGATTTTGAAGAGAAGATCAGGAATTTTGAAAGTAAAGAATCTGTCGGTTCTCGGAGATTTGAATTTCCCGCCAAATTTGAAACTCTGYGTTCAAAACTTGAAAGTTGCGAGACCTTACTGTGACTTTCAAGAGGACGATATGATCAAGCAAATTAGAACATCAACGCTTTACAACGATCTTCAGAAGGTTCTAACAGCAGACAGCTTCCCATTGGAATCTCTTGAAATGGATTACAATTTCTCAGTGAGATTAGATGCTCCAGCAAAAACCGTAGTCCTCGTCGGACAGGCATTCGGTATCGAGGCCTCTGATATTCATAGAATCCATGTCAAAAACTGTAATATGAATTGGATGAATGTGATTGATCTGGTGGGAAGGTGGCGAATGGTGCAGCCAGAGATCGGAAGACATTACTCATTGGAAACTGGACGCGGTGATGGGCTATTGGATATTTCACAGCTGCTGAAATGTCTCCGGGAAGAGGGAAGAATTTTAAGTTGTAAGTTTTCGGGAATCAAAGTTCTCAAAAAATCGGTTTTATTTTCAGTGCCAACGACTTGTACACATATGGTTTCACTTTTTCGATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>125 114 114 93 87 63 46 40 37 33 30 28 27 24 20 15 15 12 12 12 12 11 10 9 8 3</canonical_bands>
                <polymorphic_bands>147 125 114 93 87 63 46 40 37 30 28 27 24 20 15 15 12 12 12 12 11 10 9 8 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGATTTTGAAGAGAAGATCAG</pcr_primer_p1>
		<pcr_primer_p2>GAAATTGTAATCCATTTCAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ACGATTTTGAAGAGAAGATCAGGAATTTTGAAAGTAAAGAATCTGTCGGTTCTCGGAGATTTGAATTTCCCGCCAAATTTGAAACTCTGTGTTCAAAACTTGAAAGTTGCGAGACCTTACTGTGACTTTCAAGAGGACGATATGATCAAGCAAATTAGAACATCAACGCTTTACAACGATCTTCAGAAGGTTCTAACAGCAGACAGCTTCCCATTGGAATCTCTTGAAATGGATTACAATTTC</canonical_amplicon>
		<polymorphic_amplicon>ACGATTTTGAAGAGAAGATCAGGAATTTTGAAAGTAAAGAATCTGTCGGTTCTCGGAGATTTGAATTTCCCGCCAAATTTGAAACTCTGYGTTCAAAACTTGAAAGTTGCGAGACCTTACTGTGACTTTCAAGAGGACGATATGATCAAGCAAATTAGAACATCAACGCTTTACAACGATCTTCAGAAGGTTCTAACAGCAGACAGCTTCCCATTGGAATCTCTTGAAATGGATTACAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>25765</contig_pos>
        <strand>+</strand>
        <context>CYAAATYTGA[A/G]ACTCTGYGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTAAAGAATCTGTCGGTTCTCGGAGATTTGAATTTCCCGCCAAATTTGA</left_flank>
        <right_flank>ACTCTGTGTTCAAAACTTGAAAGTTGCGAGACCTTACTGTGACTTTCAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGGTTTTTATTGTGTACCGTTTGCATATGAGCCCATTCTTAACTTTCTAATTTCCAGACAGAAATATGTCCCGACCACTTATCTTTGACCTCTGGCCAACTGTGATGGATCGAATGGATCTTGCTAACAGGTTAGTATTATATTTCAAGCAATTATTGTTTAATAGAGCGCATTTTCCAGAATCCTCCTCACCCAAAAATATCCAGAATTCCGTGGAACCGATCAACGATGCTCAGCTAAAGCCACCACCGTTGAGATCACAACGAATAGTGTCAAAATCAATAACACCAGCTTCTACGTCGAAAAATATGAATCTGGAGAACACATGGAGGTTTTCCAAGACGGCGGAAAGTCTAAGGCGGTGGTTCTTAAGACTACCGTACCCCTACGTGAAGCTAAGAAGAAGCTGTTCGGAACGATTTTGAAGAGAAGATCAGGAATTTTGAAAGTAAAGAATCTGTCGGTTCTCGGAGATTTGAATTTCCCGCCAAATTTGAAACTCTGTGTTCAAAACTTGAAAGTTGCGAGACCTTACTGTGACTTTCAAGAGGACGATATGATCAAGCAAATTAGAACATCAACGCTTTACAACGATCTTCAGAAGGTTCTAACAGCAGACAGCTTCCCATTGGAATCTCTTGAAATGGATTACAATTTCTCAGTGAGATTAGATGCTCCAGCAAAAACCGTAGTCCTCGTCGGACAGGCATTCGGTATCGAGGCCTCTGATATTCATAGAATCCATGTCAAAAACTGTAATATGAATTGGATGAATGTGATTGATCTGGTGGGAAGGTGGCGAATGGTGCAGCCAGAGATCGGAAGACATTACTCATTGGAAACTGGACGCGGTGATGGGCTATTGGATATTTCACAGCTGCTGAAATGTCTCCGGGAAGAGGGAAGAATTTTAAGTTGTAAGTTTTCGGGAATCAAAGTTCTCAAAAAATCGGTTTTATTTTCAGTGCCAACGACTTGTACACATATGGTTTCACTTT</canonical>
            <polymorphic>TGGGGTTTTTATTGTGTACCGTTTGCATATGAGCCCATTCTTAACTTTCTAATTTCCAGACAGAAATATGTCCCGACCACTTATCTTTGACCTCTGGCCAACTGTGATGGATCGAATGGATCTTGCTAACAGGTTAGTATTATATTTCAAGCAATTATTGTTTAATAGAGCGCATTTTCCAGAATCCTCCTCACCCAAAAATATCCAGAATTCCGTGGAACCGATCAACGATGCTCAGCTAAAGCCACCACCGTTGAGATCACAACGAATAGTGTCAAAATCAATAACACCAGCTTCTACGTCGAAAAATATGAATCTGGAGAACACATGGAGGTTTTCCAAGACGGCGGAAAGTCTAAGGCGGTGGTTCTTAAGACTACCGTACCCCTACGTGAAGCTAAGAAGAAGCTGTTCGGAACGATTTTGAAGAGAAGATCAGGAATTTTGAAAGTAAAGAATCTGTCGGTTCTCGGAGATTTGAATTTCCCGCCAAATTTGARACTCTGTGTTCAAAACTTGAAAGTTGCGAGACCTTACTGTGACTTTCAAGAGGACGATATGATCAAGCAAATTAGAACATCAACGCTTTACAACGATCTTCAGAAGGTTCTAACAGCAGACAGCTTCCCATTGGAATCTCTTGAAATGGATTACAATTTCTCAGTGAGATTAGATGCTCCAGCAAAAACCGTAGTCCTCGTCGGACAGGCATTCGGTATCGAGGCCTCTGATATTCATAGAATCCATGTCAAAAACTGTAATATGAATTGGATGAATGTGATTGATCTGGTGGGAAGGTGGCGAATGGTGCAGCCAGAGATCGGAAGACATTACTCATTGGAAACTGGACGCGGTGATGGGCTATTGGATATTTCACAGCTGCTGAAATGTCTCCGGGAAGAGGGAAGAATTTTAAGTTGTAAGTTTTCGGGAATCAAAGTTCTCAAAAAATCGGTTTTATTTTCAGTGCCAACGACTTGTACACATATGGTTTCACTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATATGAATCTGGAGAACACA</pcr_primer_p1>
		<pcr_primer_p2>GTCCTCTTGAAAGTCACAGTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATATGAATCTGGAGAACACATGGAGGTTTTCCAAGACGGCGGAAAGTCTAAGGCGGTGGTTCTTAAGACTACCGTACCCCTACGTGAAGCTAAGAAGAAGCTGTTCGGAACGATTTTGAAGAGAAGATCAGGAATTTTGAAAGTAAAGAATCTGTCGGTTCTCGGAGATTTGAATTTCCCGCCAAATTTGAAACTCTGTGTTCAAAACTTGAAAGTTGCGAGACCTTACTGTGACTTTCAAGAGGAC</canonical_amplicon>
		<polymorphic_amplicon>AAAATATGAATCTGGAGAACACATGGAGGTTTTCCAAGACGGCGGAAAGTCTAAGGCGGTGGTTCTTAAGACTACCGTACCCCTACGTGAAGCTAAGAAGAAGCTGTTCGGAACGATTTTGAAGAGAAGATCAGGAATTTTGAAAGTAAAGAATCTGTCGGTTCTCGGAGATTTGAATTTCCCGCCAAATTTGARACTCTGTGTTCAAAACTTGAAAGTTGCGAGACCTTACTGTGACTTTCAAGAGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>25761</contig_pos>
        <strand>+</strand>
        <context>SCCGCYAAAT[C/T]TGARACTCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAAGTAAAGAATCTGTCGGTTCTCGGAGATTTGAATTTCCCGCCAAAT</left_flank>
        <right_flank>TGAAACTCTGTGTTCAAAACTTGAAAGTTGCGAGACCTTACTGTGACTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTGGGGTTTTTATTGTGTACCGTTTGCATATGAGCCCATTCTTAACTTTCTAATTTCCAGACAGAAATATGTCCCGACCACTTATCTTTGACCTCTGGCCAACTGTGATGGATCGAATGGATCTTGCTAACAGGTTAGTATTATATTTCAAGCAATTATTGTTTAATAGAGCGCATTTTCCAGAATCCTCCTCACCCAAAAATATCCAGAATTCCGTGGAACCGATCAACGATGCTCAGCTAAAGCCACCACCGTTGAGATCACAACGAATAGTGTCAAAATCAATAACACCAGCTTCTACGTCGAAAAATATGAATCTGGAGAACACATGGAGGTTTTCCAAGACGGCGGAAAGTCTAAGGCGGTGGTTCTTAAGACTACCGTACCCCTACGTGAAGCTAAGAAGAAGCTGTTCGGAACGATTTTGAAGAGAAGATCAGGAATTTTGAAAGTAAAGAATCTGTCGGTTCTCGGAGATTTGAATTTCCCGCCAAATTTGAAACTCTGTGTTCAAAACTTGAAAGTTGCGAGACCTTACTGTGACTTTCAAGAGGACGATATGATCAAGCAAATTAGAACATCAACGCTTTACAACGATCTTCAGAAGGTTCTAACAGCAGACAGCTTCCCATTGGAATCTCTTGAAATGGATTACAATTTCTCAGTGAGATTAGATGCTCCAGCAAAAACCGTAGTCCTCGTCGGACAGGCATTCGGTATCGAGGCCTCTGATATTCATAGAATCCATGTCAAAAACTGTAATATGAATTGGATGAATGTGATTGATCTGGTGGGAAGGTGGCGAATGGTGCAGCCAGAGATCGGAAGACATTACTCATTGGAAACTGGACGCGGTGATGGGCTATTGGATATTTCACAGCTGCTGAAATGTCTCCGGGAAGAGGGAAGAATTTTAAGTTGTAAGTTTTCGGGAATCAAAGTTCTCAAAAAATCGGTTTTATTTTCAGTGCCAACGACTTGTACACATATGGTTTCA</canonical>
            <polymorphic>TTCTTGGGGTTTTTATTGTGTACCGTTTGCATATGAGCCCATTCTTAACTTTCTAATTTCCAGACAGAAATATGTCCCGACCACTTATCTTTGACCTCTGGCCAACTGTGATGGATCGAATGGATCTTGCTAACAGGTTAGTATTATATTTCAAGCAATTATTGTTTAATAGAGCGCATTTTCCAGAATCCTCCTCACCCAAAAATATCCAGAATTCCGTGGAACCGATCAACGATGCTCAGCTAAAGCCACCACCGTTGAGATCACAACGAATAGTGTCAAAATCAATAACACCAGCTTCTACGTCGAAAAATATGAATCTGGAGAACACATGGAGGTTTTCCAAGACGGCGGAAAGTCTAAGGCGGTGGTTCTTAAGACTACCGTACCCCTACGTGAAGCTAAGAAGAAGCTGTTCGGAACGATTTTGAAGAGAAGATCAGGAATTTTGAAAGTAAAGAATCTGTCGGTTCTCGGAGATTTGAATTTCCCGCCAAATYTGAAACTCTGTGTTCAAAACTTGAAAGTTGCGAGACCTTACTGTGACTTTCAAGAGGACGATATGATCAAGCAAATTAGAACATCAACGCTTTACAACGATCTTCAGAAGGTTCTAACAGCAGACAGCTTCCCATTGGAATCTCTTGAAATGGATTACAATTTCTCAGTGAGATTAGATGCTCCAGCAAAAACCGTAGTCCTCGTCGGACAGGCATTCGGTATCGAGGCCTCTGATATTCATAGAATCCATGTCAAAAACTGTAATATGAATTGGATGAATGTGATTGATCTGGTGGGAAGGTGGCGAATGGTGCAGCCAGAGATCGGAAGACATTACTCATTGGAAACTGGACGCGGTGATGGGCTATTGGATATTTCACAGCTGCTGAAATGTCTCCGGGAAGAGGGAAGAATTTTAAGTTGTAAGTTTTCGGGAATCAAAGTTCTCAAAAAATCGGTTTTATTTTCAGTGCCAACGACTTGTACACATATGGTTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>416 232 212 88 40 12</canonical_bands>
                <polymorphic_bands>428 232 212 88 40</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>232 143 111 102 88 85 77 56 54 40 12</canonical_bands>
                <polymorphic_bands>232 143 111 102 89 88 85 56 54 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATATGAATCTGGAGAACACA</pcr_primer_p1>
		<pcr_primer_p2>GTCCTCTTGAAAGTCACAGTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATATGAATCTGGAGAACACATGGAGGTTTTCCAAGACGGCGGAAAGTCTAAGGCGGTGGTTCTTAAGACTACCGTACCCCTACGTGAAGCTAAGAAGAAGCTGTTCGGAACGATTTTGAAGAGAAGATCAGGAATTTTGAAAGTAAAGAATCTGTCGGTTCTCGGAGATTTGAATTTCCCGCCAAATTTGAAACTCTGTGTTCAAAACTTGAAAGTTGCGAGACCTTACTGTGACTTTCAAGAGGAC</canonical_amplicon>
		<polymorphic_amplicon>AAAATATGAATCTGGAGAACACATGGAGGTTTTCCAAGACGGCGGAAAGTCTAAGGCGGTGGTTCTTAAGACTACCGTACCCCTACGTGAAGCTAAGAAGAAGCTGTTCGGAACGATTTTGAAGAGAAGATCAGGAATTTTGAAAGTAAAGAATCTGTCGGTTCTCGGAGATTTGAATTTCCCGCCAAATYTGAAACTCTGTGTTCAAAACTTGAAAGTTGCGAGACCTTACTGTGACTTTCAAGAGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>25756</contig_pos>
        <strand>+</strand>
        <context>AATTTSCCGC[C/T]AAATYTGARA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTTGAAAGTAAAGAATCTGTCGGTTCTCGGAGATTTGAATTTCCCGC</left_flank>
        <right_flank>AAATTTGAAACTCTGTGTTCAAAACTTGAAAGTTGCGAGACCTTACTGTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTTTCTTGGGGTTTTTATTGTGTACCGTTTGCATATGAGCCCATTCTTAACTTTCTAATTTCCAGACAGAAATATGTCCCGACCACTTATCTTTGACCTCTGGCCAACTGTGATGGATCGAATGGATCTTGCTAACAGGTTAGTATTATATTTCAAGCAATTATTGTTTAATAGAGCGCATTTTCCAGAATCCTCCTCACCCAAAAATATCCAGAATTCCGTGGAACCGATCAACGATGCTCAGCTAAAGCCACCACCGTTGAGATCACAACGAATAGTGTCAAAATCAATAACACCAGCTTCTACGTCGAAAAATATGAATCTGGAGAACACATGGAGGTTTTCCAAGACGGCGGAAAGTCTAAGGCGGTGGTTCTTAAGACTACCGTACCCCTACGTGAAGCTAAGAAGAAGCTGTTCGGAACGATTTTGAAGAGAAGATCAGGAATTTTGAAAGTAAAGAATCTGTCGGTTCTCGGAGATTTGAATTTCCCGCCAAATTTGAAACTCTGTGTTCAAAACTTGAAAGTTGCGAGACCTTACTGTGACTTTCAAGAGGACGATATGATCAAGCAAATTAGAACATCAACGCTTTACAACGATCTTCAGAAGGTTCTAACAGCAGACAGCTTCCCATTGGAATCTCTTGAAATGGATTACAATTTCTCAGTGAGATTAGATGCTCCAGCAAAAACCGTAGTCCTCGTCGGACAGGCATTCGGTATCGAGGCCTCTGATATTCATAGAATCCATGTCAAAAACTGTAATATGAATTGGATGAATGTGATTGATCTGGTGGGAAGGTGGCGAATGGTGCAGCCAGAGATCGGAAGACATTACTCATTGGAAACTGGACGCGGTGATGGGCTATTGGATATTTCACAGCTGCTGAAATGTCTCCGGGAAGAGGGAAGAATTTTAAGTTGTAAGTTTTCGGGAATCAAAGTTCTCAAAAAATCGGTTTTATTTTCAGTGCCAACGACTTGTACACATATGG</canonical>
            <polymorphic>GATTTTTCTTGGGGTTTTTATTGTGTACCGTTTGCATATGAGCCCATTCTTAACTTTCTAATTTCCAGACAGAAATATGTCCCGACCACTTATCTTTGACCTCTGGCCAACTGTGATGGATCGAATGGATCTTGCTAACAGGTTAGTATTATATTTCAAGCAATTATTGTTTAATAGAGCGCATTTTCCAGAATCCTCCTCACCCAAAAATATCCAGAATTCCGTGGAACCGATCAACGATGCTCAGCTAAAGCCACCACCGTTGAGATCACAACGAATAGTGTCAAAATCAATAACACCAGCTTCTACGTCGAAAAATATGAATCTGGAGAACACATGGAGGTTTTCCAAGACGGCGGAAAGTCTAAGGCGGTGGTTCTTAAGACTACCGTACCCCTACGTGAAGCTAAGAAGAAGCTGTTCGGAACGATTTTGAAGAGAAGATCAGGAATTTTGAAAGTAAAGAATCTGTCGGTTCTCGGAGATTTGAATTTCCCGCYAAATTTGAAACTCTGTGTTCAAAACTTGAAAGTTGCGAGACCTTACTGTGACTTTCAAGAGGACGATATGATCAAGCAAATTAGAACATCAACGCTTTACAACGATCTTCAGAAGGTTCTAACAGCAGACAGCTTCCCATTGGAATCTCTTGAAATGGATTACAATTTCTCAGTGAGATTAGATGCTCCAGCAAAAACCGTAGTCCTCGTCGGACAGGCATTCGGTATCGAGGCCTCTGATATTCATAGAATCCATGTCAAAAACTGTAATATGAATTGGATGAATGTGATTGATCTGGTGGGAAGGTGGCGAATGGTGCAGCCAGAGATCGGAAGACATTACTCATTGGAAACTGGACGCGGTGATGGGCTATTGGATATTTCACAGCTGCTGAAATGTCTCCGGGAAGAGGGAAGAATTTTAAGTTGTAAGTTTTCGGGAATCAAAGTTCTCAAAAAATCGGTTTTATTTTCAGTGCCAACGACTTGTACACATATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATATGAATCTGGAGAACACA</pcr_primer_p1>
		<pcr_primer_p2>GTCCTCTTGAAAGTCACAGTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATATGAATCTGGAGAACACATGGAGGTTTTCCAAGACGGCGGAAAGTCTAAGGCGGTGGTTCTTAAGACTACCGTACCCCTACGTGAAGCTAAGAAGAAGCTGTTCGGAACGATTTTGAAGAGAAGATCAGGAATTTTGAAAGTAAAGAATCTGTCGGTTCTCGGAGATTTGAATTTCCCGCCAAATTTGAAACTCTGTGTTCAAAACTTGAAAGTTGCGAGACCTTACTGTGACTTTCAAGAGGAC</canonical_amplicon>
		<polymorphic_amplicon>AAAATATGAATCTGGAGAACACATGGAGGTTTTCCAAGACGGCGGAAAGTCTAAGGCGGTGGTTCTTAAGACTACCGTACCCCTACGTGAAGCTAAGAAGAAGCTGTTCGGAACGATTTTGAAGAGAAGATCAGGAATTTTGAAAGTAAAGAATCTGTCGGTTCTCGGAGATTTGAATTTCCCGCYAAATTTGAAACTCTGTGTTCAAAACTTGAAAGTTGCGAGACCTTACTGTGACTTTCAAGAGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>25751</contig_pos>
        <strand>+</strand>
        <context>ATTTGAATTT[C/G]CCGCYAAATY</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCAGGAATTTTGAAAGTAAAGAATCTGTCGGTTCTCGGAGATTTGAATTT</left_flank>
        <right_flank>CCGCCAAATTTGAAACTCTGTGTTCAAAACTTGAAAGTTGCGAGACCTTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATTGATTTTTCTTGGGGTTTTTATTGTGTACCGTTTGCATATGAGCCCATTCTTAACTTTCTAATTTCCAGACAGAAATATGTCCCGACCACTTATCTTTGACCTCTGGCCAACTGTGATGGATCGAATGGATCTTGCTAACAGGTTAGTATTATATTTCAAGCAATTATTGTTTAATAGAGCGCATTTTCCAGAATCCTCCTCACCCAAAAATATCCAGAATTCCGTGGAACCGATCAACGATGCTCAGCTAAAGCCACCACCGTTGAGATCACAACGAATAGTGTCAAAATCAATAACACCAGCTTCTACGTCGAAAAATATGAATCTGGAGAACACATGGAGGTTTTCCAAGACGGCGGAAAGTCTAAGGCGGTGGTTCTTAAGACTACCGTACCCCTACGTGAAGCTAAGAAGAAGCTGTTCGGAACGATTTTGAAGAGAAGATCAGGAATTTTGAAAGTAAAGAATCTGTCGGTTCTCGGAGATTTGAATTTCCCGCCAAATTTGAAACTCTGTGTTCAAAACTTGAAAGTTGCGAGACCTTACTGTGACTTTCAAGAGGACGATATGATCAAGCAAATTAGAACATCAACGCTTTACAACGATCTTCAGAAGGTTCTAACAGCAGACAGCTTCCCATTGGAATCTCTTGAAATGGATTACAATTTCTCAGTGAGATTAGATGCTCCAGCAAAAACCGTAGTCCTCGTCGGACAGGCATTCGGTATCGAGGCCTCTGATATTCATAGAATCCATGTCAAAAACTGTAATATGAATTGGATGAATGTGATTGATCTGGTGGGAAGGTGGCGAATGGTGCAGCCAGAGATCGGAAGACATTACTCATTGGAAACTGGACGCGGTGATGGGCTATTGGATATTTCACAGCTGCTGAAATGTCTCCGGGAAGAGGGAAGAATTTTAAGTTGTAAGTTTTCGGGAATCAAAGTTCTCAAAAAATCGGTTTTATTTTCAGTGCCAACGACTTGTACACA</canonical>
            <polymorphic>TTATTGATTTTTCTTGGGGTTTTTATTGTGTACCGTTTGCATATGAGCCCATTCTTAACTTTCTAATTTCCAGACAGAAATATGTCCCGACCACTTATCTTTGACCTCTGGCCAACTGTGATGGATCGAATGGATCTTGCTAACAGGTTAGTATTATATTTCAAGCAATTATTGTTTAATAGAGCGCATTTTCCAGAATCCTCCTCACCCAAAAATATCCAGAATTCCGTGGAACCGATCAACGATGCTCAGCTAAAGCCACCACCGTTGAGATCACAACGAATAGTGTCAAAATCAATAACACCAGCTTCTACGTCGAAAAATATGAATCTGGAGAACACATGGAGGTTTTCCAAGACGGCGGAAAGTCTAAGGCGGTGGTTCTTAAGACTACCGTACCCCTACGTGAAGCTAAGAAGAAGCTGTTCGGAACGATTTTGAAGAGAAGATCAGGAATTTTGAAAGTAAAGAATCTGTCGGTTCTCGGAGATTTGAATTTSCCGCCAAATTTGAAACTCTGTGTTCAAAACTTGAAAGTTGCGAGACCTTACTGTGACTTTCAAGAGGACGATATGATCAAGCAAATTAGAACATCAACGCTTTACAACGATCTTCAGAAGGTTCTAACAGCAGACAGCTTCCCATTGGAATCTCTTGAAATGGATTACAATTTCTCAGTGAGATTAGATGCTCCAGCAAAAACCGTAGTCCTCGTCGGACAGGCATTCGGTATCGAGGCCTCTGATATTCATAGAATCCATGTCAAAAACTGTAATATGAATTGGATGAATGTGATTGATCTGGTGGGAAGGTGGCGAATGGTGCAGCCAGAGATCGGAAGACATTACTCATTGGAAACTGGACGCGGTGATGGGCTATTGGATATTTCACAGCTGCTGAAATGTCTCCGGGAAGAGGGAAGAATTTTAAGTTGTAAGTTTTCGGGAATCAAAGTTCTCAAAAAATCGGTTTTATTTTCAGTGCCAACGACTTGTACACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATATGAATCTGGAGAACACA</pcr_primer_p1>
		<pcr_primer_p2>GTCCTCTTGAAAGTCACAGTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATATGAATCTGGAGAACACATGGAGGTTTTCCAAGACGGCGGAAAGTCTAAGGCGGTGGTTCTTAAGACTACCGTACCCCTACGTGAAGCTAAGAAGAAGCTGTTCGGAACGATTTTGAAGAGAAGATCAGGAATTTTGAAAGTAAAGAATCTGTCGGTTCTCGGAGATTTGAATTTCCCGCCAAATTTGAAACTCTGTGTTCAAAACTTGAAAGTTGCGAGACCTTACTGTGACTTTCAAGAGGAC</canonical_amplicon>
		<polymorphic_amplicon>AAAATATGAATCTGGAGAACACATGGAGGTTTTCCAAGACGGCGGAAAGTCTAAGGCGGTGGTTCTTAAGACTACCGTACCCCTACGTGAAGCTAAGAAGAAGCTGTTCGGAACGATTTTGAAGAGAAGATCAGGAATTTTGAAAGTAAAGAATCTGTCGGTTCTCGGAGATTTGAATTTSCCGCCAAATTTGAAACTCTGTGTTCAAAACTTGAAAGTTGCGAGACCTTACTGTGACTTTCAAGAGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>25681</contig_pos>
        <strand>+</strand>
        <context>AAGCTGTTCG[A/G]AACGATTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTTCTTAAGACTACCGTACCCCTACGTGAAGCTAAGAAGAAGCTGTTCG</left_flank>
        <right_flank>AACGATTTTGAAGAGAAGATCAGGAATTTTGAAAGTAAAGAATCTGTCGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTGACTATTTATTCATTCTTCTCTTTATCCTCCTCATCGACAGGTACATCTTCTTTTTGTGCGTCTTTTATTGATTTTTCTTGGGGTTTTTATTGTGTACCGTTTGCATATGAGCCCATTCTTAACTTTCTAATTTCCAGACAGAAATATGTCCCGACCACTTATCTTTGACCTCTGGCCAACTGTGATGGATCGAATGGATCTTGCTAACAGGTTAGTATTATATTTCAAGCAATTATTGTTTAATAGAGCGCATTTTCCAGAATCCTCCTCACCCAAAAATATCCAGAATTCCGTGGAACCGATCAACGATGCTCAGCTAAAGCCACCACCGTTGAGATCACAACGAATAGTGTCAAAATCAATAACACCAGCTTCTACGTCGAAAAATATGAATCTGGAGAACACATGGAGGTTTTCCAAGACGGCGGAAAGTCTAAGGCGGTGGTTCTTAAGACTACCGTACCCCTACGTGAAGCTAAGAAGAAGCTGTTCGGAACGATTTTGAAGAGAAGATCAGGAATTTTGAAAGTAAAGAATCTGTCGGTTCTCGGAGATTTGAATTTCCCGCCAAATTTGAAACTCTGTGTTCAAAACTTGAAAGTTGCGAGACCTTACTGTGACTTTCAAGAGGACGATATGATCAAGCAAATTAGAACATCAACGCTTTACAACGATCTTCAGAAGGTTCTAACAGCAGACAGCTTCCCATTGGAATCTCTTGAAATGGATTACAATTTCTCAGTGAGATTAGATGCTCCAGCAAAAACCGTAGTCCTCGTCGGACAGGCATTCGGTATCGAGGCCTCTGATATTCATAGAATCCATGTCAAAAACTGTAATATGAATTGGATGAATGTGATTGATCTGGTGGGAAGGTGGCGAATGGTGCAGCCAGAGATCGGAAGACATTACTCATTGGAAACTGGACGCGGTGATGGGCTATTGGATATTTCACAGCTGCTGAAATGTCTCCGGGAAGAGGGAAGAATTTTAA</canonical>
            <polymorphic>ATTTTGACTATTTATTCATTCTTCTCTTTATCCTCCTCATCGACAGGTACATCTTCTTTTTGTGCGTCTTTTATTGATTTTTCTTGGGGTTTTTATTGTGTACCGTTTGCATATGAGCCCATTCTTAACTTTCTAATTTCCAGACAGAAATATGTCCCGACCACTTATCTTTGACCTCTGGCCAACTGTGATGGATCGAATGGATCTTGCTAACAGGTTAGTATTATATTTCAAGCAATTATTGTTTAATAGAGCGCATTTTCCAGAATCCTCCTCACCCAAAAATATCCAGAATTCCGTGGAACCGATCAACGATGCTCAGCTAAAGCCACCACCGTTGAGATCACAACGAATAGTGTCAAAATCAATAACACCAGCTTCTACGTCGAAAAATATGAATCTGGAGAACACATGGAGGTTTTCCAAGACGGCGGAAAGTCTAAGGCGGTGGTTCTTAAGACTACCGTACCCCTACGTGAAGCTAAGAAGAAGCTGTTCGRAACGATTTTGAAGAGAAGATCAGGAATTTTGAAAGTAAAGAATCTGTCGGTTCTCGGAGATTTGAATTTCCCGCCAAATTTGAAACTCTGTGTTCAAAACTTGAAAGTTGCGAGACCTTACTGTGACTTTCAAGAGGACGATATGATCAAGCAAATTAGAACATCAACGCTTTACAACGATCTTCAGAAGGTTCTAACAGCAGACAGCTTCCCATTGGAATCTCTTGAAATGGATTACAATTTCTCAGTGAGATTAGATGCTCCAGCAAAAACCGTAGTCCTCGTCGGACAGGCATTCGGTATCGAGGCCTCTGATATTCATAGAATCCATGTCAAAAACTGTAATATGAATTGGATGAATGTGATTGATCTGGTGGGAAGGTGGCGAATGGTGCAGCCAGAGATCGGAAGACATTACTCATTGGAAACTGGACGCGGTGATGGGCTATTGGATATTTCACAGCTGCTGAAATGTCTCCGGGAAGAGGGAAGAATTTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>499 130 101 94 93 57 26</canonical_bands>
                <polymorphic_bands>556 130 101 94 93 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATATGAATCTGGAGAACACA</pcr_primer_p1>
		<pcr_primer_p2>GTCCTCTTGAAAGTCACAGTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATATGAATCTGGAGAACACATGGAGGTTTTCCAAGACGGCGGAAAGTCTAAGGCGGTGGTTCTTAAGACTACCGTACCCCTACGTGAAGCTAAGAAGAAGCTGTTCGGAACGATTTTGAAGAGAAGATCAGGAATTTTGAAAGTAAAGAATCTGTCGGTTCTCGGAGATTTGAATTTCCCGCCAAATTTGAAACTCTGTGTTCAAAACTTGAAAGTTGCGAGACCTTACTGTGACTTTCAAGAGGAC</canonical_amplicon>
		<polymorphic_amplicon>AAAATATGAATCTGGAGAACACATGGAGGTTTTCCAAGACGGCGGAAAGTCTAAGGCGGTGGTTCTTAAGACTACCGTACCCCTACGTGAAGCTAAGAAGAAGCTGTTCGRAACGATTTTGAAGAGAAGATCAGGAATTTTGAAAGTAAAGAATCTGTCGGTTCTCGGAGATTTGAATTTCCCGCCAAATTTGAAACTCTGTGTTCAAAACTTGAAAGTTGCGAGACCTTACTGTGACTTTCAAGAGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>38008</contig_pos>
        <strand>+</strand>
        <context>TTCTGGTCCT[A/T]ATATAGTGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCGAAATTTGGGTGGTTATACAAGACGGCTCTCAAGAAATTCTGGTCCT</left_flank>
        <right_flank>ATATAGTGGTGTTTTTTTTTCGGTTTTCTGTTCAAAAGATTTCGGCACGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTCTACCGATTTTCCCCGCAAAATCCCCCTTACTTGCTTCGATTATTCATTCACTATTTTCCCTTGTTTCCGATATTATTCTGTGAAATTATTCTTTCTCGCATTCATTCAATGCGAATATTCATATTTGAATTACCACTCCTTTTACAAAAAAAAACCCCGGGGTAAAAAAAACTCCGGAGAAAAGTGGGCGGAGCGAGGGGCGGAGCCTAAAATGCAAGGTTGCCGCACACTTTTTCCTCGATTTTTCAATAAATAAATTTCGGTTAAAATTGCATTCAAGTTCAGATTTTACAGTTTGTTTTTAATGCTGCAATGATTTGCTTATAATTTCTAAATCCGATTTAATTTAAAAAAAAACAACGTTTATTGTGTACAAAAATATAGAAAAATTAAGTGATGATCTTTCGGCATTCTCATAAATGGGAAAACTTTTTTCTGAAAATGATTCGAAATTTGGGTGGTTATACAAGACGGCTCTCAAGAAATTCTGGTCCTAATATAGTGGTGTTTTTTTTTCGGTTTTCTGTTCAAAAGATTTCGGCACGCATTTGAATCTCGAACTAAAGAACTTGTCCATTCAATGGTTTTTTGGATGGTTGTGCGCATTTGGAGAAATTCGTTGTTATGGAACTGTCTCTGCAAATTTTTCAATTATAATACTAAATATAATCTTGACTTGCCTTATATGATGCGAAGCATTTTTCAAAGTCGTTATTTGTGTAGTCAAGACCATGCTCAACTCTGTATCGACAACTCCACAGCCTGCCGAAACGCGATCGCGCCAAAAAGCCGCCTTCAAATTGTGCGGCGGAGCGCGCCTGTATTTTCAGTGTTAAATTTTGGAGTTTTTTTTTCAGATGGCGATATCTCAGCTCAAACTGAATAAAAAACGATGGGACAACCTACGAATTGTAGTTAAGCCAAAAACCCTAGATTTTTTTGAAAATCCAAAATTTTTATAAGTTCCATAACTTTGCTCAAAATCAATGAAAATTT</canonical>
            <polymorphic>GGTCTACCGATTTTCCCCGCAAAATCCCCCTTACTTGCTTCGATTATTCATTCACTATTTTCCCTTGTTTCCGATATTATTCTGTGAAATTATTCTTTCTCGCATTCATTCAATGCGAATATTCATATTTGAATTACCACTCCTTTTACAAAAAAAAACCCCGGGGTAAAAAAAACTCCGGAGAAAAGTGGGCGGAGCGAGGGGCGGAGCCTAAAATGCAAGGTTGCCGCACACTTTTTCCTCGATTTTTCAATAAATAAATTTCGGTTAAAATTGCATTCAAGTTCAGATTTTACAGTTTGTTTTTAATGCTGCAATGATTTGCTTATAATTTCTAAATCCGATTTAATTTAAAAAAAAACAACGTTTATTGTGTACAAAAATATAGAAAAATTAAGTGATGATCTTTCGGCATTCTCATAAATGGGAAAACTTTTTTCTGAAAATGATTCGAAATTTGGGTGGTTATACAAGACGGCTCTCAAGAAATTCTGGTCCTWATATAGTGGTGTTTTTTTTTCGGTTTTCTGTTCAAAAGATTTCGGCACGCATTTGAATCTCGAACTAAAGAACTTGTCCATTCAATGGTTTTTTGGATGGTTGTGCGCATTTGGAGAAATTCGTTGTTATGGAACTGTCTCTGCAAATTTTTCAATTATAATACTAAATATAATCTTGACTTGCCTTATATGATGCGAAGCATTTTTCAAAGTCGTTATTTGTGTAGTCAAGACCATGCTCAACTCTGTATCGACAACTCCACAGCCTGCCGAAACGCGATCGCGCCAAAAAGCCGCCTTCAAATTGTGCGGCGGAGCGCGCCTGTATTTTCAGTGTTAAATTTTGGAGTTTTTTTTTCAGATGGCGATATCTCAGCTCAAACTGAATAAAAAACGATGGGACAACCTACGAATTGTAGTTAAGCCAAAAACCCTAGATTTTTTTGAAAATCCAAAATTTTTATAAGTTCCATAACTTTGCTCAAAATCAATGAAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCTCATAAATGGGAAAACT</pcr_primer_p1>
		<pcr_primer_p2>TTATAATTGAAAAATTTGCAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATTCTCATAAATGGGAAAACTTTTTTCTGAAAATGATTCGAAATTTGGGTGGTTATACAAGACGGCTCTCAAGAAATTCTGGTCCTAATATAGTGGTGTTTTTTTTTCGGTTTTCTGTTCAAAAGATTTCGGCACGCATTTGAATCTCGAACTAAAGAACTTGTCCATTCAATGGTTTTTTGGATGGTTGTGCGCATTTGGAGAAATTCGTTGTTATGGAACTGTCTCTGCAAATTTTTCAATTATAA</canonical_amplicon>
		<polymorphic_amplicon>CATTCTCATAAATGGGAAAACTTTTTTCTGAAAATGATTCGAAATTTGGGTGGTTATACAAGACGGCTCTCAAGAAATTCTGGTCCTWATATAGTGGTGTTTTTTTTTCGGTTTTCTGTTCAAAAGATTTCGGCACGCATTTGAATCTCGAACTAAAGAACTTGTCCATTCAATGGTTTTTTGGATGGTTGTGCGCATTTGGAGAAATTCGTTGTTATGGAACTGTCTCTGCAAATTTTTCAATTATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>38102</contig_pos>
        <strand>+</strand>
        <context>AATGGTTTTT[C/T]GGATGGTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCACGCATTTGAATCTCGAACTAAAGAACTTGTCCATTCAATGGTTTTT</left_flank>
        <right_flank>GGATGGTTGTGCGCATTTGGAGAAATTCGTTGTTATGGAACTGTCTCTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTCTCGCATTCATTCAATGCGAATATTCATATTTGAATTACCACTCCTTTTACAAAAAAAAACCCCGGGGTAAAAAAAACTCCGGAGAAAAGTGGGCGGAGCGAGGGGCGGAGCCTAAAATGCAAGGTTGCCGCACACTTTTTCCTCGATTTTTCAATAAATAAATTTCGGTTAAAATTGCATTCAAGTTCAGATTTTACAGTTTGTTTTTAATGCTGCAATGATTTGCTTATAATTTCTAAATCCGATTTAATTTAAAAAAAAACAACGTTTATTGTGTACAAAAATATAGAAAAATTAAGTGATGATCTTTCGGCATTCTCATAAATGGGAAAACTTTTTTCTGAAAATGATTCGAAATTTGGGTGGTTATACAAGACGGCTCTCAAGAAATTCTGGTCCTAATATAGTGGTGTTTTTTTTTCGGTTTTCTGTTCAAAAGATTTCGGCACGCATTTGAATCTCGAACTAAAGAACTTGTCCATTCAATGGTTTTTTGGATGGTTGTGCGCATTTGGAGAAATTCGTTGTTATGGAACTGTCTCTGCAAATTTTTCAATTATAATACTAAATATAATCTTGACTTGCCTTATATGATGCGAAGCATTTTTCAAAGTCGTTATTTGTGTAGTCAAGACCATGCTCAACTCTGTATCGACAACTCCACAGCCTGCCGAAACGCGATCGCGCCAAAAAGCCGCCTTCAAATTGTGCGGCGGAGCGCGCCTGTATTTTCAGTGTTAAATTTTGGAGTTTTTTTTTCAGATGGCGATATCTCAGCTCAAACTGAATAAAAAACGATGGGACAACCTACGAATTGTAGTTAAGCCAAAAACCCTAGATTTTTTTGAAAATCCAAAATTTTTATAAGTTCCATAACTTTGCTCAAAATCAATGAAAATTTTTAGCAAAAAAACCCCCAAAAATCTATAATTTTGTTCCAAAACCTGTTGTGACACGATGCTCAATCAAGTGCTCACAACTGTCCAAAATGTAAT</canonical>
            <polymorphic>CTTTCTCGCATTCATTCAATGCGAATATTCATATTTGAATTACCACTCCTTTTACAAAAAAAAACCCCGGGGTAAAAAAAACTCCGGAGAAAAGTGGGCGGAGCGAGGGGCGGAGCCTAAAATGCAAGGTTGCCGCACACTTTTTCCTCGATTTTTCAATAAATAAATTTCGGTTAAAATTGCATTCAAGTTCAGATTTTACAGTTTGTTTTTAATGCTGCAATGATTTGCTTATAATTTCTAAATCCGATTTAATTTAAAAAAAAACAACGTTTATTGTGTACAAAAATATAGAAAAATTAAGTGATGATCTTTCGGCATTCTCATAAATGGGAAAACTTTTTTCTGAAAATGATTCGAAATTTGGGTGGTTATACAAGACGGCTCTCAAGAAATTCTGGTCCTAATATAGTGGTGTTTTTTTTTCGGTTTTCTGTTCAAAAGATTTCGGCACGCATTTGAATCTCGAACTAAAGAACTTGTCCATTCAATGGTTTTTYGGATGGTTGTGCGCATTTGGAGAAATTCGTTGTTATGGAACTGTCTCTGCAAATTTTTCAATTATAATACTAAATATAATCTTGACTTGCCTTATATGATGCGAAGCATTTTTCAAAGTCGTTATTTGTGTAGTCAAGACCATGCTCAACTCTGTATCGACAACTCCACAGCCTGCCGAAACGCGATCGCGCCAAAAAGCCGCCTTCAAATTGTGCGGCGGAGCGCGCCTGTATTTTCAGTGTTAAATTTTGGAGTTTTTTTTTCAGATGGCGATATCTCAGCTCAAACTGAATAAAAAACGATGGGACAACCTACGAATTGTAGTTAAGCCAAAAACCCTAGATTTTTTTGAAAATCCAAAATTTTTATAAGTTCCATAACTTTGCTCAAAATCAATGAAAATTTTTAGCAAAAAAACCCCCAAAAATCTATAATTTTGTTCCAAAACCTGTTGTGACACGATGCTCAATCAAGTGCTCACAACTGTCCAAAATGTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCTCATAAATGGGAAAACT</pcr_primer_p1>
		<pcr_primer_p2>TTATAATTGAAAAATTTGCAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATTCTCATAAATGGGAAAACTTTTTTCTGAAAATGATTCGAAATTTGGGTGGTTATACAAGACGGCTCTCAAGAAATTCTGGTCCTAATATAGTGGTGTTTTTTTTTCGGTTTTCTGTTCAAAAGATTTCGGCACGCATTTGAATCTCGAACTAAAGAACTTGTCCATTCAATGGTTTTTTGGATGGTTGTGCGCATTTGGAGAAATTCGTTGTTATGGAACTGTCTCTGCAAATTTTTCAATTATAA</canonical_amplicon>
		<polymorphic_amplicon>CATTCTCATAAATGGGAAAACTTTTTTCTGAAAATGATTCGAAATTTGGGTGGTTATACAAGACGGCTCTCAAGAAATTCTGGTCCTAATATAGTGGTGTTTTTTTTTCGGTTTTCTGTTCAAAAGATTTCGGCACGCATTTGAATCTCGAACTAAAGAACTTGTCCATTCAATGGTTTTTYGGATGGTTGTGCGCATTTGGAGAAATTCGTTGTTATGGAACTGTCTCTGCAAATTTTTCAATTATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>38198</contig_pos>
        <strand>+</strand>
        <context>CTTGCCTTAT[A/G]TGATGCGAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGCAAATTTTTCAATTATAATACTAAATATAATCTTGACTTGCCTTAT</left_flank>
        <right_flank>TGATGCGAAGCATTTTTCAAAGTCGTTATTTGTGTAGTCAAGACCATGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCGGAGCGAGGGGCGGAGCCTAAAATGCAAGGTTGCCGCACACTTTTTCCTCGATTTTTCAATAAATAAATTTCGGTTAAAATTGCATTCAAGTTCAGATTTTACAGTTTGTTTTTAATGCTGCAATGATTTGCTTATAATTTCTAAATCCGATTTAATTTAAAAAAAAACAACGTTTATTGTGTACAAAAATATAGAAAAATTAAGTGATGATCTTTCGGCATTCTCATAAATGGGAAAACTTTTTTCTGAAAATGATTCGAAATTTGGGTGGTTATACAAGACGGCTCTCAAGAAATTCTGGTCCTAATATAGTGGTGTTTTTTTTTCGGTTTTCTGTTCAAAAGATTTCGGCACGCATTTGAATCTCGAACTAAAGAACTTGTCCATTCAATGGTTTTTTGGATGGTTGTGCGCATTTGGAGAAATTCGTTGTTATGGAACTGTCTCTGCAAATTTTTCAATTATAATACTAAATATAATCTTGACTTGCCTTATATGATGCGAAGCATTTTTCAAAGTCGTTATTTGTGTAGTCAAGACCATGCTCAACTCTGTATCGACAACTCCACAGCCTGCCGAAACGCGATCGCGCCAAAAAGCCGCCTTCAAATTGTGCGGCGGAGCGCGCCTGTATTTTCAGTGTTAAATTTTGGAGTTTTTTTTTCAGATGGCGATATCTCAGCTCAAACTGAATAAAAAACGATGGGACAACCTACGAATTGTAGTTAAGCCAAAAACCCTAGATTTTTTTGAAAATCCAAAATTTTTATAAGTTCCATAACTTTGCTCAAAATCAATGAAAATTTTTAGCAAAAAAACCCCCAAAAATCTATAATTTTGTTCCAAAACCTGTTGTGACACGATGCTCAATCAAGTGCTCACAACTGTCCAAAATGTAATTGCCCTTCGCGGTCGTGTCAGTTACAACCAGCTGAAATTCAGTGTCCAGTATCGTGCGGTACCAAATCAAGGCACAGCAACCACTCAGACTTGTGT</canonical>
            <polymorphic>GGCGGAGCGAGGGGCGGAGCCTAAAATGCAAGGTTGCCGCACACTTTTTCCTCGATTTTTCAATAAATAAATTTCGGTTAAAATTGCATTCAAGTTCAGATTTTACAGTTTGTTTTTAATGCTGCAATGATTTGCTTATAATTTCTAAATCCGATTTAATTTAAAAAAAAACAACGTTTATTGTGTACAAAAATATAGAAAAATTAAGTGATGATCTTTCGGCATTCTCATAAATGGGAAAACTTTTTTCTGAAAATGATTCGAAATTTGGGTGGTTATACAAGACGGCTCTCAAGAAATTCTGGTCCTAATATAGTGGTGTTTTTTTTTCGGTTTTCTGTTCAAAAGATTTCGGCACGCATTTGAATCTCGAACTAAAGAACTTGTCCATTCAATGGTTTTTTGGATGGTTGTGCGCATTTGGAGAAATTCGTTGTTATGGAACTGTCTCTGCAAATTTTTCAATTATAATACTAAATATAATCTTGACTTGCCTTATRTGATGCGAAGCATTTTTCAAAGTCGTTATTTGTGTAGTCAAGACCATGCTCAACTCTGTATCGACAACTCCACAGCCTGCCGAAACGCGATCGCGCCAAAAAGCCGCCTTCAAATTGTGCGGCGGAGCGCGCCTGTATTTTCAGTGTTAAATTTTGGAGTTTTTTTTTCAGATGGCGATATCTCAGCTCAAACTGAATAAAAAACGATGGGACAACCTACGAATTGTAGTTAAGCCAAAAACCCTAGATTTTTTTGAAAATCCAAAATTTTTATAAGTTCCATAACTTTGCTCAAAATCAATGAAAATTTTTAGCAAAAAAACCCCCAAAAATCTATAATTTTGTTCCAAAACCTGTTGTGACACGATGCTCAATCAAGTGCTCACAACTGTCCAAAATGTAATTGCCCTTCGCGGTCGTGTCAGTTACAACCAGCTGAAATTCAGTGTCCAGTATCGTGCGGTACCAAATCAAGGCACAGCAACCACTCAGACTTGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTTCTGTTCAAAAGATTTC</pcr_primer_p1>
		<pcr_primer_p2>GGAGTTGTCGATACAGAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GGTTTTCTGTTCAAAAGATTTCGGCACGCATTTGAATCTCGAACTAAAGAACTTGTCCATTCAATGGTTTTTTGGATGGTTGTGCGCATTTGGAGAAATTCGTTGTTATGGAACTGTCTCTGCAAATTTTTCAATTATAATACTAAATATAATCTTGACTTGCCTTATATGATGCGAAGCATTTTTCAAAGTCGTTATTTGTGTAGTCAAGACCATGCTCAACTCTGTATCGACAACTCC</canonical_amplicon>
		<polymorphic_amplicon>GGTTTTCTGTTCAAAAGATTTCGGCACGCATTTGAATCTCGAACTAAAGAACTTGTCCATTCAATGGTTTTTTGGATGGTTGTGCGCATTTGGAGAAATTCGTTGTTATGGAACTGTCTCTGCAAATTTTTCAATTATAATACTAAATATAATCTTGACTTGCCTTATRTGATGCGAAGCATTTTTCAAAGTCGTTATTTGTGTAGTCAAGACCATGCTCAACTCTGTATCGACAACTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>40433</contig_pos>
        <strand></strand>
        <context>gttggaaata[T/G]ggaattttkg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TCATTTTGGTTTTGCATTGACCTGAGAAATCGAAATTTTTGTTGGAAATA</left_flank>
        <right_flank>GGAATTTTGGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTCACTCATTTCAGTTTTTTCAAATTTGTTCTAGCTCAATTTTGAAGCGAGTTAAGAGCCTTTGAAGTTTGGAAAAGACGCAGAGAAGCTAGATCTGTCTCGTTGTCTGCGTCTCGTTCTTCCCATTGTGTCTGGTGGTGGGTTCTTTAAAGGCTCATAACTTGCTTCAAAATAGAGCTAGAGAGTTGATGTTAGTCTCATTTTGAAGTTAAAAATTGGCTTAATACCTCATAGGATTTTGGACAGAATTAAGATTTTTTGAAAGCATGAATTTTGATTTCCATTTCTTTATGCTCTAAATAAGAAATTTTTACCTGAATAATGGCTCCATTACAATTGACAGCGGTTCCAGTTGGAAGTGCATCACAAGTTGGGCCAGTGAAATAGTTGGGGCATTTGCATTGATTGCAGTTTTTGGGGTCGGTGAATCCACAGTTTGAGCAGGTCATTTTGGTTTTGCATTGACCTGAGAAATCGAAATTTTTGTTGGAAATATGGAATTTTGGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCGACGGTGCGTCGCGGTTGGAAGATTAAAAATTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACTACATCCAGAAAATGAATATTATGTTTTTTTGAATTCTCAACTGATATTTCAAAATTTTCATACACTTTTGAAGTTTTGAGAAAAAATTGAAAACCTTATACTTCTTTTTTTTCTCTAAACTTGACAACTTTGTGATCTTTGAATTTGGCTTGTTGAGAGCTTCAAAATGAGTATAATCATGCCCTAGTTAGCACGATTTGGATTTTTCGGATGCGTCGCGGTCGTGCGTCACGGTTGGCAGATCGAAATTACAAAATTGAAGGAAATAGGTCTTGTTGGGGCTCATTTTGAAGCTCTTGATGTCAGAAAATCAATTTCACAACTGTCAAAAAA</canonical>
            <polymorphic>AAATTTCACTCATTTCAGTTTTTTCAAATTTGTTCTAGCTCAATTTTGAAGCGAGTTAAGAGCCTTTGAAGTTTGGAAAAGACGCAGAGAAGCTAGATCTGTCTCGTTGTCTGCGTCTCGTTCTTCCCATTGTGTCTGGTGGTGGGTTCTTTAAAGGCTCATAACTTGCTTCAAAATAGAGCTAGAGAGTTGATGTTAGTCTCATTTTGAAGTTAAAAATTGGCTTAATACCTCATAGGATTTTGGACAGAATTAAGATTTTTTGAAAGCATGAATTTTGATTTCCATTTCTTTATGCTCTAAATAAGAAATTTTTACCTGAATAATGGCTCCATTACAATTGACAGCGGTTCCAGTTGGAAGTGCATCACAAGTTGGGCCAGTGAAATAGTTGGGGCATTTGCATTGATTGCAGTTTTTGGGGTCGGTGAATCCACAGTTTGAGCAGGTCATTTTGGTTTTGCATTGACCTGAGAAATCGAAATTTTTGTTGGAAATAKGGAATTTTGGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCGACGGTGCGTCGCGGTTGGAAGATTAAAAATTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACTACATCCAGAAAATGAATATTATGTTTTTTTGAATTCTCAACTGATATTTCAAAATTTTCATACACTTTTGAAGTTTTGAGAAAAAATTGAAAACCTTATACTTCTTTTTTTTCTCTAAACTTGACAACTTTGTGATCTTTGAATTTGGCTTGTTGAGAGCTTCAAAATGAGTATAATCATGCCCTAGTTAGCACGATTTGGATTTTTCGGATGCGTCGCGGTCGTGCGTCACGGTTGGCAGATCGAAATTACAAAATTGAAGGAAATAGGTCTTGTTGGGGCTCATTTTGAAGCTCTTGATGTCAGAAAATCAATTTCACAACTGTCAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTGAGCAGGTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCATTTTCTGGATGTAGTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTGAGCAGGTCATTTTGGTTTTGCATTGACCTGAGAAATCGAAATTTTTGTTGGAAATATGGAATTTTGGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCGACGGTGCGTCGCGGTTGGAAGATTAAAAATTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACTACATCCAGAAAATGAA</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTGAGCAGGTCATTTTGGTTTTGCATTGACCTGAGAAATCGAAATTTTTGTTGGAAATAKGGAATTTTGGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCGACGGTGCGTCGCGGTTGGAAGATTAAAAATTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACTACATCCAGAAAATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>40422</contig_pos>
        <strand></strand>
        <context>tcgaaatttt[T/C]gttggaaata</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTTTGAGCAGGTCATTTTGGTTTTGCATTGACCTGAGAAATCGAAATTTT</left_flank>
        <right_flank>GTTGGAAATATGGAATTTTGGATTTGGCTTATCGCAAGCTTCAAAATAAG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAGAGCAAGAAATTTCACTCATTTCAGTTTTTTCAAATTTGTTCTAGCTCAATTTTGAAGCGAGTTAAGAGCCTTTGAAGTTTGGAAAAGACGCAGAGAAGCTAGATCTGTCTCGTTGTCTGCGTCTCGTTCTTCCCATTGTGTCTGGTGGTGGGTTCTTTAAAGGCTCATAACTTGCTTCAAAATAGAGCTAGAGAGTTGATGTTAGTCTCATTTTGAAGTTAAAAATTGGCTTAATACCTCATAGGATTTTGGACAGAATTAAGATTTTTTGAAAGCATGAATTTTGATTTCCATTTCTTTATGCTCTAAATAAGAAATTTTTACCTGAATAATGGCTCCATTACAATTGACAGCGGTTCCAGTTGGAAGTGCATCACAAGTTGGGCCAGTGAAATAGTTGGGGCATTTGCATTGATTGCAGTTTTTGGGGTCGGTGAATCCACAGTTTGAGCAGGTCATTTTGGTTTTGCATTGACCTGAGAAATCGAAATTTTTGTTGGAAATATGGAATTTTGGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCGACGGTGCGTCGCGGTTGGAAGATTAAAAATTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACTACATCCAGAAAATGAATATTATGTTTTTTTGAATTCTCAACTGATATTTCAAAATTTTCATACACTTTTGAAGTTTTGAGAAAAAATTGAAAACCTTATACTTCTTTTTTTTCTCTAAACTTGACAACTTTGTGATCTTTGAATTTGGCTTGTTGAGAGCTTCAAAATGAGTATAATCATGCCCTAGTTAGCACGATTTGGATTTTTCGGATGCGTCGCGGTCGTGCGTCACGGTTGGCAGATCGAAATTACAAAATTGAAGGAAATAGGTCTTGTTGGGGCTCATTTTGAAGCTCTTGATGTCAGAAAATCAATTTCACAA</canonical>
            <polymorphic>GATAGAGCAAGAAATTTCACTCATTTCAGTTTTTTCAAATTTGTTCTAGCTCAATTTTGAAGCGAGTTAAGAGCCTTTGAAGTTTGGAAAAGACGCAGAGAAGCTAGATCTGTCTCGTTGTCTGCGTCTCGTTCTTCCCATTGTGTCTGGTGGTGGGTTCTTTAAAGGCTCATAACTTGCTTCAAAATAGAGCTAGAGAGTTGATGTTAGTCTCATTTTGAAGTTAAAAATTGGCTTAATACCTCATAGGATTTTGGACAGAATTAAGATTTTTTGAAAGCATGAATTTTGATTTCCATTTCTTTATGCTCTAAATAAGAAATTTTTACCTGAATAATGGCTCCATTACAATTGACAGCGGTTCCAGTTGGAAGTGCATCACAAGTTGGGCCAGTGAAATAGTTGGGGCATTTGCATTGATTGCAGTTTTTGGGGTCGGTGAATCCACAGTTTGAGCAGGTCATTTTGGTTTTGCATTGACCTGAGAAATCGAAATTTTYGTTGGAAATATGGAATTTTGGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCGACGGTGCGTCGCGGTTGGAAGATTAAAAATTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACTACATCCAGAAAATGAATATTATGTTTTTTTGAATTCTCAACTGATATTTCAAAATTTTCATACACTTTTGAAGTTTTGAGAAAAAATTGAAAACCTTATACTTCTTTTTTTTCTCTAAACTTGACAACTTTGTGATCTTTGAATTTGGCTTGTTGAGAGCTTCAAAATGAGTATAATCATGCCCTAGTTAGCACGATTTGGATTTTTCGGATGCGTCGCGGTCGTGCGTCACGGTTGGCAGATCGAAATTACAAAATTGAAGGAAATAGGTCTTGTTGGGGCTCATTTTGAAGCTCTTGATGTCAGAAAATCAATTTCACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTGAGCAGGTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCATTTTCTGGATGTAGTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTGAGCAGGTCATTTTGGTTTTGCATTGACCTGAGAAATCGAAATTTTTGTTGGAAATATGGAATTTTGGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCGACGGTGCGTCGCGGTTGGAAGATTAAAAATTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACTACATCCAGAAAATGAA</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTGAGCAGGTCATTTTGGTTTTGCATTGACCTGAGAAATCGAAATTTTYGTTGGAAATATGGAATTTTGGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCGACGGTGCGTCGCGGTTGGAAGATTAAAAATTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACTACATCCAGAAAATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>40550</contig_pos>
        <strand>+</strand>
        <context>AAGATYAAAA[A/T]TTTAAATATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGATTTTTCGAAGGCGTCGCGACGGTGCGTCGCGGTTGGAAGATTAAAA</left_flank>
        <right_flank>TTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGTTCTTCCCATTGTGTCTGGTGGTGGGTTCTTTAAAGGCTCATAACTTGCTTCAAAATAGAGCTAGAGAGTTGATGTTAGTCTCATTTTGAAGTTAAAAATTGGCTTAATACCTCATAGGATTTTGGACAGAATTAAGATTTTTTGAAAGCATGAATTTTGATTTCCATTTCTTTATGCTCTAAATAAGAAATTTTTACCTGAATAATGGCTCCATTACAATTGACAGCGGTTCCAGTTGGAAGTGCATCACAAGTTGGGCCAGTGAAATAGTTGGGGCATTTGCATTGATTGCAGTTTTTGGGGTCGGTGAATCCACAGTTTGAGCAGGTCATTTTGGTTTTGCATTGACCTGAGAAATCGAAATTTTTGTTGGAAATATGGAATTTTGGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCGACGGTGCGTCGCGGTTGGAAGATTAAAAATTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACTACATCCAGAAAATGAATATTATGTTTTTTTGAATTCTCAACTGATATTTCAAAATTTTCATACACTTTTGAAGTTTTGAGAAAAAATTGAAAACCTTATACTTCTTTTTTTTCTCTAAACTTGACAACTTTGTGATCTTTGAATTTGGCTTGTTGAGAGCTTCAAAATGAGTATAATCATGCCCTAGTTAGCACGATTTGGATTTTTCGGATGCGTCGCGGTCGTGCGTCACGGTTGGCAGATCGAAATTACAAAATTGAAGGAAATAGGTCTTGTTGGGGCTCATTTTGAAGCTCTTGATGTCAGAAAATCAATTTCACAACTGTCAAAAAATTTTGACTCACTTGTACAGTTATAAAGCTTGTTAACTGCAATCAGATCGGAAAACGCTGGTGCCTCTCGTTGTCCCATACTATTTTGCATGCCATTTTCTTTGGCTAGAATCGTGTA</canonical>
            <polymorphic>TCGTTCTTCCCATTGTGTCTGGTGGTGGGTTCTTTAAAGGCTCATAACTTGCTTCAAAATAGAGCTAGAGAGTTGATGTTAGTCTCATTTTGAAGTTAAAAATTGGCTTAATACCTCATAGGATTTTGGACAGAATTAAGATTTTTTGAAAGCATGAATTTTGATTTCCATTTCTTTATGCTCTAAATAAGAAATTTTTACCTGAATAATGGCTCCATTACAATTGACAGCGGTTCCAGTTGGAAGTGCATCACAAGTTGGGCCAGTGAAATAGTTGGGGCATTTGCATTGATTGCAGTTTTTGGGGTCGGTGAATCCACAGTTTGAGCAGGTCATTTTGGTTTTGCATTGACCTGAGAAATCGAAATTTTTGTTGGAAATATGGAATTTTGGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCGACGGTGCGTCGCGGTTGGAAGATTAAAAWTTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACTACATCCAGAAAATGAATATTATGTTTTTTTGAATTCTCAACTGATATTTCAAAATTTTCATACACTTTTGAAGTTTTGAGAAAAAATTGAAAACCTTATACTTCTTTTTTTTCTCTAAACTTGACAACTTTGTGATCTTTGAATTTGGCTTGTTGAGAGCTTCAAAATGAGTATAATCATGCCCTAGTTAGCACGATTTGGATTTTTCGGATGCGTCGCGGTCGTGCGTCACGGTTGGCAGATCGAAATTACAAAATTGAAGGAAATAGGTCTTGTTGGGGCTCATTTTGAAGCTCTTGATGTCAGAAAATCAATTTCACAACTGTCAAAAAATTTTGACTCACTTGTACAGTTATAAAGCTTGTTAACTGCAATCAGATCGGAAAACGCTGGTGCCTCTCGTTGTCCCATACTATTTTGCATGCCATTTTCTTTGGCTAGAATCGTGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>190 173 156 119 113 89 83 36 21 20</canonical_bands>
                <polymorphic_bands>196 190 173 156 119 89 36 21 20</polymorphic_bands>
            </assay>
            <assay>
                <site>ATTTAAAT</site>
                <isoschizomers>
                    <enzyme>SmiI</enzyme>
                    <enzyme>SwaI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>144 119 105 100 62 58 57 51 47 36 36 33 32 29 23 21 20 19 8</canonical_bands>
                <polymorphic_bands>144 119 105 100 98 58 57 51 47 36 33 32 29 23 21 20 19 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTGAGCAGGTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCATTTTCTGGATGTAGTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTGAGCAGGTCATTTTGGTTTTGCATTGACCTGAGAAATCGAAATTTTTGTTGGAAATATGGAATTTTGGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCGACGGTGCGTCGCGGTTGGAAGATTAAAAATTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACTACATCCAGAAAATGAA</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTGAGCAGGTCATTTTGGTTTTGCATTGACCTGAGAAATCGAAATTTTTGTTGGAAATATGGAATTTTGGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCGACGGTGCGTCGCGGTTGGAAGATTAAAAWTTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACTACATCCAGAAAATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb40</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>40545</contig_pos>
        <strand>+</strand>
        <context>GTTGGAAGAT[C/T]AAAAWTTTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGACATTGATTTTTCGAAGGCGTCGCGACGGTGCGTCGCGGTTGGAAGAT</left_flank>
        <right_flank>AAAAATTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGTCTCGTTCTTCCCATTGTGTCTGGTGGTGGGTTCTTTAAAGGCTCATAACTTGCTTCAAAATAGAGCTAGAGAGTTGATGTTAGTCTCATTTTGAAGTTAAAAATTGGCTTAATACCTCATAGGATTTTGGACAGAATTAAGATTTTTTGAAAGCATGAATTTTGATTTCCATTTCTTTATGCTCTAAATAAGAAATTTTTACCTGAATAATGGCTCCATTACAATTGACAGCGGTTCCAGTTGGAAGTGCATCACAAGTTGGGCCAGTGAAATAGTTGGGGCATTTGCATTGATTGCAGTTTTTGGGGTCGGTGAATCCACAGTTTGAGCAGGTCATTTTGGTTTTGCATTGACCTGAGAAATCGAAATTTTTGTTGGAAATATGGAATTTTGGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCGACGGTGCGTCGCGGTTGGAAGATTAAAAATTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACTACATCCAGAAAATGAATATTATGTTTTTTTGAATTCTCAACTGATATTTCAAAATTTTCATACACTTTTGAAGTTTTGAGAAAAAATTGAAAACCTTATACTTCTTTTTTTTCTCTAAACTTGACAACTTTGTGATCTTTGAATTTGGCTTGTTGAGAGCTTCAAAATGAGTATAATCATGCCCTAGTTAGCACGATTTGGATTTTTCGGATGCGTCGCGGTCGTGCGTCACGGTTGGCAGATCGAAATTACAAAATTGAAGGAAATAGGTCTTGTTGGGGCTCATTTTGAAGCTCTTGATGTCAGAAAATCAATTTCACAACTGTCAAAAAATTTTGACTCACTTGTACAGTTATAAAGCTTGTTAACTGCAATCAGATCGGAAAACGCTGGTGCCTCTCGTTGTCCCATACTATTTTGCATGCCATTTTCTTTGGCTAGAATC</canonical>
            <polymorphic>GCGTCTCGTTCTTCCCATTGTGTCTGGTGGTGGGTTCTTTAAAGGCTCATAACTTGCTTCAAAATAGAGCTAGAGAGTTGATGTTAGTCTCATTTTGAAGTTAAAAATTGGCTTAATACCTCATAGGATTTTGGACAGAATTAAGATTTTTTGAAAGCATGAATTTTGATTTCCATTTCTTTATGCTCTAAATAAGAAATTTTTACCTGAATAATGGCTCCATTACAATTGACAGCGGTTCCAGTTGGAAGTGCATCACAAGTTGGGCCAGTGAAATAGTTGGGGCATTTGCATTGATTGCAGTTTTTGGGGTCGGTGAATCCACAGTTTGAGCAGGTCATTTTGGTTTTGCATTGACCTGAGAAATCGAAATTTTTGTTGGAAATATGGAATTTTGGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCGACGGTGCGTCGCGGTTGGAAGATYAAAAATTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACTACATCCAGAAAATGAATATTATGTTTTTTTGAATTCTCAACTGATATTTCAAAATTTTCATACACTTTTGAAGTTTTGAGAAAAAATTGAAAACCTTATACTTCTTTTTTTTCTCTAAACTTGACAACTTTGTGATCTTTGAATTTGGCTTGTTGAGAGCTTCAAAATGAGTATAATCATGCCCTAGTTAGCACGATTTGGATTTTTCGGATGCGTCGCGGTCGTGCGTCACGGTTGGCAGATCGAAATTACAAAATTGAAGGAAATAGGTCTTGTTGGGGCTCATTTTGAAGCTCTTGATGTCAGAAAATCAATTTCACAACTGTCAAAAAATTTTGACTCACTTGTACAGTTATAAAGCTTGTTAACTGCAATCAGATCGGAAAACGCTGGTGCCTCTCGTTGTCCCATACTATTTTGCATGCCATTTTCTTTGGCTAGAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>413 358 80 62 39 28 12 8</canonical_bands>
                <polymorphic_bands>413 366 80 62 39 28 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTGAGCAGGTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCATTTTCTGGATGTAGTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTGAGCAGGTCATTTTGGTTTTGCATTGACCTGAGAAATCGAAATTTTTGTTGGAAATATGGAATTTTGGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCGACGGTGCGTCGCGGTTGGAAGATTAAAAATTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACTACATCCAGAAAATGAA</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTGAGCAGGTCATTTTGGTTTTGCATTGACCTGAGAAATCGAAATTTTTGTTGGAAATATGGAATTTTGGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCGACGGTGCGTCGCGGTTGGAAGATYAAAAATTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACTACATCCAGAAAATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb41</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>40522</contig_pos>
        <strand>+</strand>
        <context>AGGCGTCGCG[A/G]CGGTGCGTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCG</left_flank>
        <right_flank>CGGTGCGTCGCGGTTGGAAGATTAAAAATTTAAATATGAGCGAAATAGGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCTAGATCTGTCTCGTTGTCTGCGTCTCGTTCTTCCCATTGTGTCTGGTGGTGGGTTCTTTAAAGGCTCATAACTTGCTTCAAAATAGAGCTAGAGAGTTGATGTTAGTCTCATTTTGAAGTTAAAAATTGGCTTAATACCTCATAGGATTTTGGACAGAATTAAGATTTTTTGAAAGCATGAATTTTGATTTCCATTTCTTTATGCTCTAAATAAGAAATTTTTACCTGAATAATGGCTCCATTACAATTGACAGCGGTTCCAGTTGGAAGTGCATCACAAGTTGGGCCAGTGAAATAGTTGGGGCATTTGCATTGATTGCAGTTTTTGGGGTCGGTGAATCCACAGTTTGAGCAGGTCATTTTGGTTTTGCATTGACCTGAGAAATCGAAATTTTTGTTGGAAATATGGAATTTTGGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCGACGGTGCGTCGCGGTTGGAAGATTAAAAATTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACTACATCCAGAAAATGAATATTATGTTTTTTTGAATTCTCAACTGATATTTCAAAATTTTCATACACTTTTGAAGTTTTGAGAAAAAATTGAAAACCTTATACTTCTTTTTTTTCTCTAAACTTGACAACTTTGTGATCTTTGAATTTGGCTTGTTGAGAGCTTCAAAATGAGTATAATCATGCCCTAGTTAGCACGATTTGGATTTTTCGGATGCGTCGCGGTCGTGCGTCACGGTTGGCAGATCGAAATTACAAAATTGAAGGAAATAGGTCTTGTTGGGGCTCATTTTGAAGCTCTTGATGTCAGAAAATCAATTTCACAACTGTCAAAAAATTTTGACTCACTTGTACAGTTATAAAGCTTGTTAACTGCAATCAGATCGGAAAACGCTGGTGCCTCTCGTTGTCCCATACTATTTTGCA</canonical>
            <polymorphic>AAGCTAGATCTGTCTCGTTGTCTGCGTCTCGTTCTTCCCATTGTGTCTGGTGGTGGGTTCTTTAAAGGCTCATAACTTGCTTCAAAATAGAGCTAGAGAGTTGATGTTAGTCTCATTTTGAAGTTAAAAATTGGCTTAATACCTCATAGGATTTTGGACAGAATTAAGATTTTTTGAAAGCATGAATTTTGATTTCCATTTCTTTATGCTCTAAATAAGAAATTTTTACCTGAATAATGGCTCCATTACAATTGACAGCGGTTCCAGTTGGAAGTGCATCACAAGTTGGGCCAGTGAAATAGTTGGGGCATTTGCATTGATTGCAGTTTTTGGGGTCGGTGAATCCACAGTTTGAGCAGGTCATTTTGGTTTTGCATTGACCTGAGAAATCGAAATTTTTGTTGGAAATATGGAATTTTGGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCGRCGGTGCGTCGCGGTTGGAAGATTAAAAATTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACTACATCCAGAAAATGAATATTATGTTTTTTTGAATTCTCAACTGATATTTCAAAATTTTCATACACTTTTGAAGTTTTGAGAAAAAATTGAAAACCTTATACTTCTTTTTTTTCTCTAAACTTGACAACTTTGTGATCTTTGAATTTGGCTTGTTGAGAGCTTCAAAATGAGTATAATCATGCCCTAGTTAGCACGATTTGGATTTTTCGGATGCGTCGCGGTCGTGCGTCACGGTTGGCAGATCGAAATTACAAAATTGAAGGAAATAGGTCTTGTTGGGGCTCATTTTGAAGCTCTTGATGTCAGAAAATCAATTTCACAACTGTCAAAAAATTTTGACTCACTTGTACAGTTATAAAGCTTGTTAACTGCAATCAGATCGGAAAACGCTGGTGCCTCTCGTTGTCCCATACTATTTTGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNNNGTC</site>
                <isoschizomers>
                    <enzyme>AhdI</enzyme>
                    <enzyme>AspEI</enzyme>
                    <enzyme>Eam1105I</enzyme>
                    <enzyme>EclHKI</enzyme>
                    <enzyme>NruGI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGCGA</site>
                <isoschizomers>
                    <enzyme>Bsp68I</enzyme>
                    <enzyme>NruI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>349 309 153 91 71 27</canonical_bands>
                <polymorphic_bands>462 349 91 71 27</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>496 291 126 87</canonical_bands>
                <polymorphic_bands>583 291 126</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>497 286 204 8 5</canonical_bands>
                <polymorphic_bands>497 286 204 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTGAGCAGGTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCATTTTCTGGATGTAGTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTGAGCAGGTCATTTTGGTTTTGCATTGACCTGAGAAATCGAAATTTTTGTTGGAAATATGGAATTTTGGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCGACGGTGCGTCGCGGTTGGAAGATTAAAAATTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACTACATCCAGAAAATGAA</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTGAGCAGGTCATTTTGGTTTTGCATTGACCTGAGAAATCGAAATTTTTGTTGGAAATATGGAATTTTGGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCGRCGGTGCGTCGCGGTTGGAAGATTAAAAATTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACTACATCCAGAAAATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb42</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>33889</contig_pos>
        <strand></strand>
        <context>agagccccct[A/G]ctttgagctt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTGAAAGCAAAGCTCCGTAACGGCTCGCTTGTTATATAAGAGCCCCCT</left_flank>
        <right_flank>CTTTGAGCTTAAATATCTCGGCTCTTGGGAGAGATATCAAAAAGATGTAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATAAATTGGTGATAAAATGATAAACATTTTATCAGTTGATCATTTTTTGATACCTTGCACGGGAACAGTGATAAATTGGCTCGAAGTTGGATGGTTTGGGGGTGCCGCCCATACAGTTTCTATATACTTTACTAGCTCAGCTCCTGGCAAAGATACCAAAAAATGGTCAACTAACAAAATATTGATGATAAAATGATAAACATTTTATTAGTTGATTACTTTTTGATATCTTGCACAGGAACAGTGATGATGGGGTCAAAGTTGGCGGGTTTAAAGATAACAGCTTAAATAGCCACGCCACCGAACACCTGTCCTTTAAGCTCAATTATCTCGGCTCATGTGGAAGATGTCAAAAAGTGAACCATTGATAAAATGTTGCTGATATTATGTTAAATATTTTATCAGTTGAACACTTTTTGGTACCTTCTACAGGAGCCGAGATAACTTAAGTGAAAGCAAAGCTCCGTAACGGCTCGCTTGTTATATAAGAGCCCCCTACTTTGAGCTTAAATATCTCGGCTCTTGGGAGAGATATCAAAAAGATGTACACTAATAAAATATTGCTGATAAAGTGATAAACATTTTACCAGTTGACCATTTTTTGATATCTCTCATAGAAATTGAGATAAATTGGATAAAAGTTTTATTGGATGTGTGATAACGTGCTCGCTCTATTGTTAAATTTCAATAGCGTTCTAGTGATTATGTCAAAAAAAAATCGAATTGTCTGAACCAACAACATAAAAAATCAGATTTTTCCAAAAAAATTATTTTAATGGTCATATTTATTTATTTTTGGTTTTCTAATTTTTACTGAAAACCCGTCGTTTTGCAGGTGATCAAATATATACAGAAAAGATATAATTGAGTTTATTTTGGTCACGAATTCTGGAAAAAATTAAATTCAAATGCATATTTATGAAATTTCAGGGGTTGGAGAATCAAGAAGTTTTGAAAGTTGAGCGAGAACTTTTCAGATTTTCCAGATTTTCTAAAAG</canonical>
            <polymorphic>TAATAAATTGGTGATAAAATGATAAACATTTTATCAGTTGATCATTTTTTGATACCTTGCACGGGAACAGTGATAAATTGGCTCGAAGTTGGATGGTTTGGGGGTGCCGCCCATACAGTTTCTATATACTTTACTAGCTCAGCTCCTGGCAAAGATACCAAAAAATGGTCAACTAACAAAATATTGATGATAAAATGATAAACATTTTATTAGTTGATTACTTTTTGATATCTTGCACAGGAACAGTGATGATGGGGTCAAAGTTGGCGGGTTTAAAGATAACAGCTTAAATAGCCACGCCACCGAACACCTGTCCTTTAAGCTCAATTATCTCGGCTCATGTGGAAGATGTCAAAAAGTGAACCATTGATAAAATGTTGCTGATATTATGTTAAATATTTTATCAGTTGAACACTTTTTGGTACCTTCTACAGGAGCCGAGATAACTTAAGTGAAAGCAAAGCTCCGTAACGGCTCGCTTGTTATATAAGAGCCCCCTRCTTTGAGCTTAAATATCTCGGCTCTTGGGAGAGATATCAAAAAGATGTACACTAATAAAATATTGCTGATAAAGTGATAAACATTTTACCAGTTGACCATTTTTTGATATCTCTCATAGAAATTGAGATAAATTGGATAAAAGTTTTATTGGATGTGTGATAACGTGCTCGCTCTATTGTTAAATTTCAATAGCGTTCTAGTGATTATGTCAAAAAAAAATCGAATTGTCTGAACCAACAACATAAAAAATCAGATTTTTCCAAAAAAATTATTTTAATGGTCATATTTATTTATTTTTGGTTTTCTAATTTTTACTGAAAACCCGTCGTTTTGCAGGTGATCAAATATATACAGAAAAGATATAATTGAGTTTATTTTGGTCACGAATTCTGGAAAAAATTAAATTCAAATGCATATTTATGAAATTTCAGGGGTTGGAGAATCAAGAAGTTTTGAAAGTTGAGCGAGAACTTTTCAGATTTTCCAGATTTTCTAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAGGGTTAGACAGGATTTC</pcr_primer_p1>
		<pcr_primer_p2>CACGTTATCACACATCCAATAA</pcr_primer_p2>
		<pcr_amplicon_size>756</pcr_amplicon_size>
		<canonical_amplicon>TACTTTGAGCTTAAATATCTCGGCTCTTGGGAGAGATATCAAAAAGATGTACACTAATAAAATATTGCTGATAAAGTGATAAACATTTTACCAGTTGACCATTTTTTGATATCTCTCATAGAAATTGAGATAAATTGGATAAAAGTTTTATTGGATGTGTGATAACGTG</canonical_amplicon>
		<polymorphic_amplicon>TRCTTTGAGCTTAAATATCTCGGCTCTTGGGAGAGATATCAAAAAGATGTACACTAATAAAATATTGCTGATAAAGTGATAAACATTTTACCAGTTGACCATTTTTTGATATCTCTCATAGAAATTGAGATAAATTGGATAAAAGTTTTATTGGATGTGTGATAACGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb43</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>34082</contig_pos>
        <strand>+</strand>
        <context>AATTTCAATA[G/T]CGTTCTAGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTTTATTGGATGTGTGATAACGTGCTCGCTCTATTGTTAAATTTCAATA</left_flank>
        <right_flank>CGTTCTAGTGATTATGTCAAAAAAAAATCGAATTGTCTGAACCAACAACA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGATAAACATTTTATTAGTTGATTACTTTTTGATATCTTGCACAGGAACAGTGATGATGGGGTCAAAGTTGGCGGGTTTAAAGATAACAGCTTAAATAGCCACGCCACCGAACACCTGTCCTTTAAGCTCAATTATCTCGGCTCATGTGGAAGATGTCAAAAAGTGAACCATTGATAAAATGTTGCTGATATTATGTTAAATATTTTATCAGTTGAACACTTTTTGGTACCTTCTACAGGAGCCGAGATAACTTAAGTGAAAGCAAAGCTCCGTAACGGCTCGCTTGTTATATAAGAGCCCCCTACTTTGAGCTTAAATATCTCGGCTCTTGGGAGAGATATCAAAAAGATGTACACTAATAAAATATTGCTGATAAAGTGATAAACATTTTACCAGTTGACCATTTTTTGATATCTCTCATAGAAATTGAGATAAATTGGATAAAAGTTTTATTGGATGTGTGATAACGTGCTCGCTCTATTGTTAAATTTCAATAGCGTTCTAGTGATTATGTCAAAAAAAAATCGAATTGTCTGAACCAACAACATAAAAAATCAGATTTTTCCAAAAAAATTATTTTAATGGTCATATTTATTTATTTTTGGTTTTCTAATTTTTACTGAAAACCCGTCGTTTTGCAGGTGATCAAATATATACAGAAAAGATATAATTGAGTTTATTTTGGTCACGAATTCTGGAAAAAATTAAATTCAAATGCATATTTATGAAATTTCAGGGGTTGGAGAATCAAGAAGTTTTGAAAGTTGAGCGAGAACTTTTCAGATTTTCCAGATTTTCTAAAAGTCCAAATACCGTAAAACCTCTATTAGAAGGGCCGGCCCTTCTATTGTTACAAGGTACCTTTGGAGGGCCCTTTTATTAGAGGGGCCCTTTTAATAAAGGGGCCCTTCTAATACAGGTTTTAAGCTATACTATGTTTCTTTTCTGTCTATTTTTTCCCAAGTCTTTTTTTATTTTAGGTAGACAAATAAAAATA</canonical>
            <polymorphic>AATGATAAACATTTTATTAGTTGATTACTTTTTGATATCTTGCACAGGAACAGTGATGATGGGGTCAAAGTTGGCGGGTTTAAAGATAACAGCTTAAATAGCCACGCCACCGAACACCTGTCCTTTAAGCTCAATTATCTCGGCTCATGTGGAAGATGTCAAAAAGTGAACCATTGATAAAATGTTGCTGATATTATGTTAAATATTTTATCAGTTGAACACTTTTTGGTACCTTCTACAGGAGCCGAGATAACTTAAGTGAAAGCAAAGCTCCGTAACGGCTCGCTTGTTATATAAGAGCCCCCTACTTTGAGCTTAAATATCTCGGCTCTTGGGAGAGATATCAAAAAGATGTACACTAATAAAATATTGCTGATAAAGTGATAAACATTTTACCAGTTGACCATTTTTTGATATCTCTCATAGAAATTGAGATAAATTGGATAAAAGTTTTATTGGATGTGTGATAACGTGCTCGCTCTATTGTTAAATTTCAATAKCGTTCTAGTGATTATGTCAAAAAAAAATCGAATTGTCTGAACCAACAACATAAAAAATCAGATTTTTCCAAAAAAATTATTTTAATGGTCATATTTATTTATTTTTGGTTTTCTAATTTTTACTGAAAACCCGTCGTTTTGCAGGTGATCAAATATATACAGAAAAGATATAATTGAGTTTATTTTGGTCACGAATTCTGGAAAAAATTAAATTCAAATGCATATTTATGAAATTTCAGGGGTTGGAGAATCAAGAAGTTTTGAAAGTTGAGCGAGAACTTTTCAGATTTTCCAGATTTTCTAAAAGTCCAAATACCGTAAAACCTCTATTAGAAGGGCCGGCCCTTCTATTGTTACAAGGTACCTTTGGAGGGCCCTTTTATTAGAGGGGCCCTTTTAATAAAGGGGCCCTTCTAATACAGGTTTTAAGCTATACTATGTTTCTTTTCTGTCTATTTTTTCCCAAGTCTTTTTTTATTTTAGGTAGACAAATAAAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAGGGTTAGACAGGATTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTATGTTGTTGGTTCAGACAAT</pcr_primer_p2>
		<pcr_amplicon_size>836</pcr_amplicon_size>
		<canonical_amplicon>AGCGTTCTAGTGATTATGTCAAAAAAAAATCGAATTGTCTGAACCAACAACATAAA</canonical_amplicon>
		<polymorphic_amplicon>AKCGTTCTAGTGATTATGTCAAAAAAAAATCGAATTGTCTGAACCAACAACATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb44</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>34093</contig_pos>
        <strand>+</strand>
        <context>CGTTCTAGTG[A/C]TTATGTCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGTGTGATAACGTGCTCGCTCTATTGTTAAATTTCAATAGCGTTCTAGTG</left_flank>
        <right_flank>TTATGTCAAAAAAAAATCGAATTGTCTGAACCAACAACATAAAAAATCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTATTAGTTGATTACTTTTTGATATCTTGCACAGGAACAGTGATGATGGGGTCAAAGTTGGCGGGTTTAAAGATAACAGCTTAAATAGCCACGCCACCGAACACCTGTCCTTTAAGCTCAATTATCTCGGCTCATGTGGAAGATGTCAAAAAGTGAACCATTGATAAAATGTTGCTGATATTATGTTAAATATTTTATCAGTTGAACACTTTTTGGTACCTTCTACAGGAGCCGAGATAACTTAAGTGAAAGCAAAGCTCCGTAACGGCTCGCTTGTTATATAAGAGCCCCCTACTTTGAGCTTAAATATCTCGGCTCTTGGGAGAGATATCAAAAAGATGTACACTAATAAAATATTGCTGATAAAGTGATAAACATTTTACCAGTTGACCATTTTTTGATATCTCTCATAGAAATTGAGATAAATTGGATAAAAGTTTTATTGGATGTGTGATAACGTGCTCGCTCTATTGTTAAATTTCAATAGCGTTCTAGTGATTATGTCAAAAAAAAATCGAATTGTCTGAACCAACAACATAAAAAATCAGATTTTTCCAAAAAAATTATTTTAATGGTCATATTTATTTATTTTTGGTTTTCTAATTTTTACTGAAAACCCGTCGTTTTGCAGGTGATCAAATATATACAGAAAAGATATAATTGAGTTTATTTTGGTCACGAATTCTGGAAAAAATTAAATTCAAATGCATATTTATGAAATTTCAGGGGTTGGAGAATCAAGAAGTTTTGAAAGTTGAGCGAGAACTTTTCAGATTTTCCAGATTTTCTAAAAGTCCAAATACCGTAAAACCTCTATTAGAAGGGCCGGCCCTTCTATTGTTACAAGGTACCTTTGGAGGGCCCTTTTATTAGAGGGGCCCTTTTAATAAAGGGGCCCTTCTAATACAGGTTTTAAGCTATACTATGTTTCTTTTCTGTCTATTTTTTCCCAAGTCTTTTTTTATTTTAGGTAGACAAATAAAAATAAAAATAAAACA</canonical>
            <polymorphic>TTTTATTAGTTGATTACTTTTTGATATCTTGCACAGGAACAGTGATGATGGGGTCAAAGTTGGCGGGTTTAAAGATAACAGCTTAAATAGCCACGCCACCGAACACCTGTCCTTTAAGCTCAATTATCTCGGCTCATGTGGAAGATGTCAAAAAGTGAACCATTGATAAAATGTTGCTGATATTATGTTAAATATTTTATCAGTTGAACACTTTTTGGTACCTTCTACAGGAGCCGAGATAACTTAAGTGAAAGCAAAGCTCCGTAACGGCTCGCTTGTTATATAAGAGCCCCCTACTTTGAGCTTAAATATCTCGGCTCTTGGGAGAGATATCAAAAAGATGTACACTAATAAAATATTGCTGATAAAGTGATAAACATTTTACCAGTTGACCATTTTTTGATATCTCTCATAGAAATTGAGATAAATTGGATAAAAGTTTTATTGGATGTGTGATAACGTGCTCGCTCTATTGTTAAATTTCAATAGCGTTCTAGTGMTTATGTCAAAAAAAAATCGAATTGTCTGAACCAACAACATAAAAAATCAGATTTTTCCAAAAAAATTATTTTAATGGTCATATTTATTTATTTTTGGTTTTCTAATTTTTACTGAAAACCCGTCGTTTTGCAGGTGATCAAATATATACAGAAAAGATATAATTGAGTTTATTTTGGTCACGAATTCTGGAAAAAATTAAATTCAAATGCATATTTATGAAATTTCAGGGGTTGGAGAATCAAGAAGTTTTGAAAGTTGAGCGAGAACTTTTCAGATTTTCCAGATTTTCTAAAAGTCCAAATACCGTAAAACCTCTATTAGAAGGGCCGGCCCTTCTATTGTTACAAGGTACCTTTGGAGGGCCCTTTTATTAGAGGGGCCCTTTTAATAAAGGGGCCCTTCTAATACAGGTTTTAAGCTATACTATGTTTCTTTTCTGTCTATTTTTTCCCAAGTCTTTTTTTATTTTAGGTAGACAAATAAAAATAAAAATAAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAGGGTTAGACAGGATTTC</pcr_primer_p1>
		<pcr_primer_p2>ATATATTTGATCACCTGCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>940</pcr_amplicon_size>
		<canonical_amplicon>GATTATGTCAAAAAAAAATCGAATTGTCTGAACCAACAACATAAAAAATCAGATTTTTCCAAAAAAATTATTTTAATGGTCATATTTATTTATTTTTGGTTTTCTAATTTTTACTGAAAACCCGTCGTTTTGCAGGTGATCAAATATAT</canonical_amplicon>
		<polymorphic_amplicon>GMTTATGTCAAAAAAAAATCGAATTGTCTGAACCAACAACATAAAAAATCAGATTTTTCCAAAAAAATTATTTTAATGGTCATATTTATTTATTTTTGGTTTTCTAATTTTTACTGAAAACCCGTCGTTTTGCAGGTGATCAAATATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb45</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>34177</contig_pos>
        <strand>+</strand>
        <context>ATGGTCATAT[A/T]TATTTATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACAACATAAAAAATCAGATTTTTCCAAAAAAATTATTTTAATGGTCATAT</left_flank>
        <right_flank>TATTTATTTTTGGTTTTCTAATTTTTACTGAAAACCCGTCGTTTTGCAGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATAGCCACGCCACCGAACACCTGTCCTTTAAGCTCAATTATCTCGGCTCATGTGGAAGATGTCAAAAAGTGAACCATTGATAAAATGTTGCTGATATTATGTTAAATATTTTATCAGTTGAACACTTTTTGGTACCTTCTACAGGAGCCGAGATAACTTAAGTGAAAGCAAAGCTCCGTAACGGCTCGCTTGTTATATAAGAGCCCCCTACTTTGAGCTTAAATATCTCGGCTCTTGGGAGAGATATCAAAAAGATGTACACTAATAAAATATTGCTGATAAAGTGATAAACATTTTACCAGTTGACCATTTTTTGATATCTCTCATAGAAATTGAGATAAATTGGATAAAAGTTTTATTGGATGTGTGATAACGTGCTCGCTCTATTGTTAAATTTCAATAGCGTTCTAGTGATTATGTCAAAAAAAAATCGAATTGTCTGAACCAACAACATAAAAAATCAGATTTTTCCAAAAAAATTATTTTAATGGTCATATTTATTTATTTTTGGTTTTCTAATTTTTACTGAAAACCCGTCGTTTTGCAGGTGATCAAATATATACAGAAAAGATATAATTGAGTTTATTTTGGTCACGAATTCTGGAAAAAATTAAATTCAAATGCATATTTATGAAATTTCAGGGGTTGGAGAATCAAGAAGTTTTGAAAGTTGAGCGAGAACTTTTCAGATTTTCCAGATTTTCTAAAAGTCCAAATACCGTAAAACCTCTATTAGAAGGGCCGGCCCTTCTATTGTTACAAGGTACCTTTGGAGGGCCCTTTTATTAGAGGGGCCCTTTTAATAAAGGGGCCCTTCTAATACAGGTTTTAAGCTATACTATGTTTCTTTTCTGTCTATTTTTTCCCAAGTCTTTTTTTATTTTAGGTAGACAAATAAAAATAAAAATAAAACAAAAAGAATTAAGAGGAGAGTCCGGAATGTTTATTTACCCGGAAGTTTACTCAAACATCAAGTTCAAAAAAAGCATAAATGTGGA</canonical>
            <polymorphic>AAATAGCCACGCCACCGAACACCTGTCCTTTAAGCTCAATTATCTCGGCTCATGTGGAAGATGTCAAAAAGTGAACCATTGATAAAATGTTGCTGATATTATGTTAAATATTTTATCAGTTGAACACTTTTTGGTACCTTCTACAGGAGCCGAGATAACTTAAGTGAAAGCAAAGCTCCGTAACGGCTCGCTTGTTATATAAGAGCCCCCTACTTTGAGCTTAAATATCTCGGCTCTTGGGAGAGATATCAAAAAGATGTACACTAATAAAATATTGCTGATAAAGTGATAAACATTTTACCAGTTGACCATTTTTTGATATCTCTCATAGAAATTGAGATAAATTGGATAAAAGTTTTATTGGATGTGTGATAACGTGCTCGCTCTATTGTTAAATTTCAATAGCGTTCTAGTGATTATGTCAAAAAAAAATCGAATTGTCTGAACCAACAACATAAAAAATCAGATTTTTCCAAAAAAATTATTTTAATGGTCATATWTATTTATTTTTGGTTTTCTAATTTTTACTGAAAACCCGTCGTTTTGCAGGTGATCAAATATATACAGAAAAGATATAATTGAGTTTATTTTGGTCACGAATTCTGGAAAAAATTAAATTCAAATGCATATTTATGAAATTTCAGGGGTTGGAGAATCAAGAAGTTTTGAAAGTTGAGCGAGAACTTTTCAGATTTTCCAGATTTTCTAAAAGTCCAAATACCGTAAAACCTCTATTAGAAGGGCCGGCCCTTCTATTGTTACAAGGTACCTTTGGAGGGCCCTTTTATTAGAGGGGCCCTTTTAATAAAGGGGCCCTTCTAATACAGGTTTTAAGCTATACTATGTTTCTTTTCTGTCTATTTTTTCCCAAGTCTTTTTTTATTTTAGGTAGACAAATAAAAATAAAAATAAAACAAAAAGAATTAAGAGGAGAGTCCGGAATGTTTATTTACCCGGAAGTTTACTCAAACATCAAGTTCAAAAAAAGCATAAATGTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATAACGTGCTCGCTCTATT</pcr_primer_p1>
		<pcr_primer_p2>AATTCGTGACCAAAATAAACTC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>GATAACGTGCTCGCTCTATTGTTAAATTTCAATAGCGTTCTAGTGATTATGTCAAAAAAAAATCGAATTGTCTGAACCAACAACATAAAAAATCAGATTTTTCCAAAAAAATTATTTTAATGGTCATATTTATTTATTTTTGGTTTTCTAATTTTTACTGAAAACCCGTCGTTTTGCAGGTGATCAAATATATACAGAAAAGATATAATTGAGTTTATTTTGGTCACGAATT</canonical_amplicon>
		<polymorphic_amplicon>GATAACGTGCTCGCTCTATTGTTAAATTTCAATAGCGTTCTAGTGATTATGTCAAAAAAAAATCGAATTGTCTGAACCAACAACATAAAAAATCAGATTTTTCCAAAAAAATTATTTTAATGGTCATATWTATTTATTTTTGGTTTTCTAATTTTTACTGAAAACCCGTCGTTTTGCAGGTGATCAAATATATACAGAAAAGATATAATTGAGTTTATTTTGGTCACGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb46</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>34196</contig_pos>
        <strand></strand>
        <context>TTTGGTTTTC[T/G]AATTTTKACT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTTTCCAAAAAAATTATTTTAATGGTCATATTTATTTATTTTTGGTTTTC</left_flank>
        <right_flank>AATTTTTACTGAAAACCCGTCGTTTTGCAGGTGATCAAATATATACAGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACCTGTCCTTTAAGCTCAATTATCTCGGCTCATGTGGAAGATGTCAAAAAGTGAACCATTGATAAAATGTTGCTGATATTATGTTAAATATTTTATCAGTTGAACACTTTTTGGTACCTTCTACAGGAGCCGAGATAACTTAAGTGAAAGCAAAGCTCCGTAACGGCTCGCTTGTTATATAAGAGCCCCCTACTTTGAGCTTAAATATCTCGGCTCTTGGGAGAGATATCAAAAAGATGTACACTAATAAAATATTGCTGATAAAGTGATAAACATTTTACCAGTTGACCATTTTTTGATATCTCTCATAGAAATTGAGATAAATTGGATAAAAGTTTTATTGGATGTGTGATAACGTGCTCGCTCTATTGTTAAATTTCAATAGCGTTCTAGTGATTATGTCAAAAAAAAATCGAATTGTCTGAACCAACAACATAAAAAATCAGATTTTTCCAAAAAAATTATTTTAATGGTCATATTTATTTATTTTTGGTTTTCTAATTTTTACTGAAAACCCGTCGTTTTGCAGGTGATCAAATATATACAGAAAAGATATAATTGAGTTTATTTTGGTCACGAATTCTGGAAAAAATTAAATTCAAATGCATATTTATGAAATTTCAGGGGTTGGAGAATCAAGAAGTTTTGAAAGTTGAGCGAGAACTTTTCAGATTTTCCAGATTTTCTAAAAGTCCAAATACCGTAAAACCTCTATTAGAAGGGCCGGCCCTTCTATTGTTACAAGGTACCTTTGGAGGGCCCTTTTATTAGAGGGGCCCTTTTAATAAAGGGGCCCTTCTAATACAGGTTTTAAGCTATACTATGTTTCTTTTCTGTCTATTTTTTCCCAAGTCTTTTTTTATTTTAGGTAGACAAATAAAAATAAAAATAAAACAAAAAGAATTAAGAGGAGAGTCCGGAATGTTTATTTACCCGGAAGTTTACTCAAACATCAAGTTCAAAAAAAGCATAAATGTGGAAAAAGAACAAAATTTGAAT</canonical>
            <polymorphic>CACCTGTCCTTTAAGCTCAATTATCTCGGCTCATGTGGAAGATGTCAAAAAGTGAACCATTGATAAAATGTTGCTGATATTATGTTAAATATTTTATCAGTTGAACACTTTTTGGTACCTTCTACAGGAGCCGAGATAACTTAAGTGAAAGCAAAGCTCCGTAACGGCTCGCTTGTTATATAAGAGCCCCCTACTTTGAGCTTAAATATCTCGGCTCTTGGGAGAGATATCAAAAAGATGTACACTAATAAAATATTGCTGATAAAGTGATAAACATTTTACCAGTTGACCATTTTTTGATATCTCTCATAGAAATTGAGATAAATTGGATAAAAGTTTTATTGGATGTGTGATAACGTGCTCGCTCTATTGTTAAATTTCAATAGCGTTCTAGTGATTATGTCAAAAAAAAATCGAATTGTCTGAACCAACAACATAAAAAATCAGATTTTTCCAAAAAAATTATTTTAATGGTCATATTTATTTATTTTTGGTTTTCKAATTTTTACTGAAAACCCGTCGTTTTGCAGGTGATCAAATATATACAGAAAAGATATAATTGAGTTTATTTTGGTCACGAATTCTGGAAAAAATTAAATTCAAATGCATATTTATGAAATTTCAGGGGTTGGAGAATCAAGAAGTTTTGAAAGTTGAGCGAGAACTTTTCAGATTTTCCAGATTTTCTAAAAGTCCAAATACCGTAAAACCTCTATTAGAAGGGCCGGCCCTTCTATTGTTACAAGGTACCTTTGGAGGGCCCTTTTATTAGAGGGGCCCTTTTAATAAAGGGGCCCTTCTAATACAGGTTTTAAGCTATACTATGTTTCTTTTCTGTCTATTTTTTCCCAAGTCTTTTTTTATTTTAGGTAGACAAATAAAAATAAAAATAAAACAAAAAGAATTAAGAGGAGAGTCCGGAATGTTTATTTACCCGGAAGTTTACTCAAACATCAAGTTCAAAAAAAGCATAAATGTGGAAAAAGAACAAAATTTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATAACGTGCTCGCTCTATT</pcr_primer_p1>
		<pcr_primer_p2>AATTCGTGACCAAAATAAACTC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>GATAACGTGCTCGCTCTATTGTTAAATTTCAATAGCGTTCTAGTGATTATGTCAAAAAAAAATCGAATTGTCTGAACCAACAACATAAAAAATCAGATTTTTCCAAAAAAATTATTTTAATGGTCATATTTATTTATTTTTGGTTTTCTAATTTTTACTGAAAACCCGTCGTTTTGCAGGTGATCAAATATATACAGAAAAGATATAATTGAGTTTATTTTGGTCACGAATT</canonical_amplicon>
		<polymorphic_amplicon>GATAACGTGCTCGCTCTATTGTTAAATTTCAATAGCGTTCTAGTGATTATGTCAAAAAAAAATCGAATTGTCTGAACCAACAACATAAAAAATCAGATTTTTCCAAAAAAATTATTTTAATGGTCATATTTATTTATTTTTGGTTTTCKAATTTTTACTGAAAACCCGTCGTTTTGCAGGTGATCAAATATATACAGAAAAGATATAATTGAGTTTATTTTGGTCACGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb47</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>36047</contig_pos>
        <strand></strand>
        <context>ATCGTCTGGC[T/A]ATCTTTAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCACACTTCAGATAATTGACATTTTTATTGACACATAAGAATCGTCTGGC</left_flank>
        <right_flank>ATCTTTAGAATTCTAAAATAATGCCTCTCAACTTTGAGCTCAATTATCTG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATCGAAAAAAAATTTTTTTGAAATTGTACAAAAAATATTGCAGATGATAGAGAAATGATCAAAAAAGAGTTTCCCGCTTGAAAAAATCCTGGAAAATGATTTTTAAAGCTCGAAAAATGCACGTTTTTGGTCAAAATTTAGTACTGAAAACACTTTGAGAGCCCATATTTTTGTTCCTATTAGGGTTATGACCGAGATATTGCTGAATTCGTATTCAGCATGTTCGAAAGTACCTTTGTACAAGTTTTGAGCTAATTCTCAACGCCCCTCTGAAAACACTTCCCTTGTGAGGAAATTTAGATTTTCTGAGGAACCAAAAATTAGACTAGAAGACAACATTTTCAGATTTTACCCTCTGAAGCTCCGCCCTTTTTTACAGTACAGGGTTCTTCATACGTCATCATGGAACATGTACAGACAATACACACAAATTATAAATAAGAGATTTCACACTTCAGATAATTGACATTTTTATTGACACATAAGAATCGTCTGGCTATCTTTAGAATTCTAAAATAATGCCTCTCAACTTTGAGCTCAATTATCTGGGTTACTGTAAGAGATATTAAAAAGTTGTCAACTAATAAAATGTTTGCCATAATATCAGCAACATTTTATCAGTTGATCACTTTTTAATATATCTTGCGGTAACCGAGATATATGAGAGAAAAGTTGAGAACATAAAAAGCCCGCACCATTTTATTTATAGGGAATTTTGACCCTAATTATTTCATTAGCTATAAGAGATATCAAGAAGTTGTTAGCTGATGAAATATTGATGCTTTTATGATAAACATTTTATTAGTTGACTACTTTTTGATATGTCTCACAGTAACCGAGATAAATTAGCTCAAAGTTAAAAGCTCGGAGGGTCAACGTGTCTCCTGTTGTTTAAAAAAATGCTCGCAACTTTTCCGATTTTTGAGATAGAGACTTGATTTTTGCACCAATTGAAAGATCATGATTTTTTGACTAACCTCAAAAAATAAATATAAATT</canonical>
            <polymorphic>AAATCGAAAAAAAATTTTTTTGAAATTGTACAAAAAATATTGCAGATGATAGAGAAATGATCAAAAAAGAGTTTCCCGCTTGAAAAAATCCTGGAAAATGATTTTTAAAGCTCGAAAAATGCACGTTTTTGGTCAAAATTTAGTACTGAAAACACTTTGAGAGCCCATATTTTTGTTCCTATTAGGGTTATGACCGAGATATTGCTGAATTCGTATTCAGCATGTTCGAAAGTACCTTTGTACAAGTTTTGAGCTAATTCTCAACGCCCCTCTGAAAACACTTCCCTTGTGAGGAAATTTAGATTTTCTGAGGAACCAAAAATTAGACTAGAAGACAACATTTTCAGATTTTACCCTCTGAAGCTCCGCCCTTTTTTACAGTACAGGGTTCTTCATACGTCATCATGGAACATGTACAGACAATACACACAAATTATAAATAAGAGATTTCACACTTCAGATAATTGACATTTTTATTGACACATAAGAATCGTCTGGCWATCTTTAGAATTCTAAAATAATGCCTCTCAACTTTGAGCTCAATTATCTGGGTTACTGTAAGAGATATTAAAAAGTTGTCAACTAATAAAATGTTTGCCATAATATCAGCAACATTTTATCAGTTGATCACTTTTTAATATATCTTGCGGTAACCGAGATATATGAGAGAAAAGTTGAGAACATAAAAAGCCCGCACCATTTTATTTATAGGGAATTTTGACCCTAATTATTTCATTAGCTATAAGAGATATCAAGAAGTTGTTAGCTGATGAAATATTGATGCTTTTATGATAAACATTTTATTAGTTGACTACTTTTTGATATGTCTCACAGTAACCGAGATAAATTAGCTCAAAGTTAAAAGCTCGGAGGGTCAACGTGTCTCCTGTTGTTTAAAAAAATGCTCGCAACTTTTCCGATTTTTGAGATAGAGACTTGATTTTTGCACCAATTGAAAGATCATGATTTTTTGACTAACCTCAAAAAATAAATATAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>152 135 135 110 110 90 85 53 49 40 27 14</canonical_bands>
                <polymorphic_bands>175 152 135 110 110 90 85 53 49 27 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCACACTTCAGATAATTGACA</pcr_primer_p1>
		<pcr_primer_p2>GCAAAAATCAAGTCTCTATCTCA</pcr_primer_p2>
		<pcr_amplicon_size>500</pcr_amplicon_size>
		<canonical_amplicon>TTTCACACTTCAGATAATTGACATTTTTATTGACACATAAGAATCGTCTGGCTATCTTTAGAATTCTAAAATAATGCCTCTCAACTTTGAGCTCAATTATCTGGGTTACTGTAAGAGATATTAAAAAGTTGTCAACTAATAAAATGTTTGCCATAATATCAGCAACATTTTATCAGTTGATCACTTTTTAATATATCTTGCGGTAACCGAGATATATGAGAGAAAAGTTGAGAACATAAAAAGCCCGCACCATTTTATTTATAGGGAATTTTGACCCTAATTATTTCATTAGCTATAAGAGATATCAAGAAGTTGTTAGCTGATGAAATATTGATGCTTTTATGATAAACATTTTATTAGTTGACTACTTTTTGATATGTCTCACAGTAACCGAGATAAATTAGCTCAAAGTTAAAAGCTCGGAGGGTCAACGTGTCTCCTGTTGTTTAAAAAAATGCTCGCAACTTTTCCGATTTTTGAGATAGAGACTTGATTTTTGC</canonical_amplicon>
		<polymorphic_amplicon>TTTCACACTTCAGATAATTGACATTTTTATTGACACATAAGAATCGTCTGGCWATCTTTAGAATTCTAAAATAATGCCTCTCAACTTTGAGCTCAATTATCTGGGTTACTGTAAGAGATATTAAAAAGTTGTCAACTAATAAAATGTTTGCCATAATATCAGCAACATTTTATCAGTTGATCACTTTTTAATATATCTTGCGGTAACCGAGATATATGAGAGAAAAGTTGAGAACATAAAAAGCCCGCACCATTTTATTTATAGGGAATTTTGACCCTAATTATTTCATTAGCTATAAGAGATATCAAGAAGTTGTTAGCTGATGAAATATTGATGCTTTTATGATAAACATTTTATTAGTTGACTACTTTTTGATATGTCTCACAGTAACCGAGATAAATTAGCTCAAAGTTAAAAGCTCGGAGGGTCAACGTGTCTCCTGTTGTTTAAAAAAATGCTCGCAACTTTTCCGATTTTTGAGATAGAGACTTGATTTTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb48</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>90342</contig_pos>
        <strand>+</strand>
        <context>CTCCAATGCA[A/C]GCGTGGCATT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCGTAGTCGAGTTTGCGAATGTCCTCGCCGAGATTGGTTCCTCCAATGCA</left_flank>
        <right_flank>GCGTGGCATTGGACGTTCATATAGTCTCCGAGAGCCAAGACGACCTGGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAGCACTGAAAATGCTTGAGGCTCCAGAATCTGGAGCACTTCCTACCTTTCTACGAGTATTGCAGAAAAGCACGGCCTGAGTGATGGTGAGGGTGTCGTAGAGATCGATGAGGGTATCGAACTTCCACTCCTCCTTATCGACGGCAACGAAGAATTGCTTGATTCCTTCAAGAGTCAACTCGTCACGTTTCACCAGAATTCTGATCGGATCCGTCATGAATTTGCTGGTCATCTCGAGAATCTCGTGTGGAAGTGTGGCGGAGAGCAACACGACCTGAGCTCCAGGTGGCAAATAGCGATAGATATCGTACAGCTGCTCCTTGAATCCCTTGTTGAGCATCTCGTCGGCCTCGTCGAGCACCAAGAGCTTGATGGCGCGAGTGCGGAGGTTACGACGGCGAATCATGTCGAAGACACGGCCAGGGGTGCCTGAGACGACGTGCTGTCCGTAGTCGAGTTTGCGAATGTCCTCGCCGAGATTGGTTCCTCCAATGCACGCGTGGCATTGGACGTTCATATAGTCTCCGAGAGCCAAGACGACCTGGAAGTTTGGAGATTTGGCTAGAAGGGAAAATTTCTGGAAATGGAGTCTAAATTAGCTGAAAATAGCTGAAAATTCCTTTGAAATCGCTGGAAATGGGGTCAAAAACGCTGAAATTACCTTAGTAACGGTCAAGGAACCACTGAATATAGGTCTAAATTAGCTATTTCCAGCGAATTCAGACCTGTTTTGAAGGGATTTCAAGCTGTTTTCCACGAATTTTGGGTCATTTTCAGCCTATTTTCAAGGTTTTAAGTCAATTTTCAGCAACAATTAGCCGTTATCTATTTGGAGACGATTTTCAGTGAATTTCTTTCCGAAAGACACTTGTTTTTCCCGCGTTTTCAGTACGAAAACGGGGTGATTTTCAGTAATTGGCTAATCGCCAAAAAAACTAGGACTGTTTTGCACCTTACAAAAATTTCAAAAGCTCCAGACGCCAGAAAACGGTCAAAA</canonical>
            <polymorphic>AAAAAGCACTGAAAATGCTTGAGGCTCCAGAATCTGGAGCACTTCCTACCTTTCTACGAGTATTGCAGAAAAGCACGGCCTGAGTGATGGTGAGGGTGTCGTAGAGATCGATGAGGGTATCGAACTTCCACTCCTCCTTATCGACGGCAACGAAGAATTGCTTGATTCCTTCAAGAGTCAACTCGTCACGTTTCACCAGAATTCTGATCGGATCCGTCATGAATTTGCTGGTCATCTCGAGAATCTCGTGTGGAAGTGTGGCGGAGAGCAACACGACCTGAGCTCCAGGTGGCAAATAGCGATAGATATCGTACAGCTGCTCCTTGAATCCCTTGTTGAGCATCTCGTCGGCCTCGTCGAGCACCAAGAGCTTGATGGCGCGAGTGCGGAGGTTACGACGGCGAATCATGTCGAAGACACGGCCAGGGGTGCCTGAGACGACGTGCTGTCCGTAGTCGAGTTTGCGAATGTCCTCGCCGAGATTGGTTCCTCCAATGCAMGCGTGGCATTGGACGTTCATATAGTCTCCGAGAGCCAAGACGACCTGGAAGTTTGGAGATTTGGCTAGAAGGGAAAATTTCTGGAAATGGAGTCTAAATTAGCTGAAAATAGCTGAAAATTCCTTTGAAATCGCTGGAAATGGGGTCAAAAACGCTGAAATTACCTTAGTAACGGTCAAGGAACCACTGAATATAGGTCTAAATTAGCTATTTCCAGCGAATTCAGACCTGTTTTGAAGGGATTTCAAGCTGTTTTCCACGAATTTTGGGTCATTTTCAGCCTATTTTCAAGGTTTTAAGTCAATTTTCAGCAACAATTAGCCGTTATCTATTTGGAGACGATTTTCAGTGAATTTCTTTCCGAAAGACACTTGTTTTTCCCGCGTTTTCAGTACGAAAACGGGGTGATTTTCAGTAATTGGCTAATCGCCAAAAAAACTAGGACTGTTTTGCACCTTACAAAAATTTCAAAAGCTCCAGACGCCAGAAAACGGTCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>382 380 121 117</canonical_bands>
                <polymorphic_bands>503 380 117</polymorphic_bands>
            </assay>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>181 92 73 72 58 55 54 47 46 37 34 33 33 32 23 19 18 14 13 12 11 8 7 6 6 6 6 2 2</canonical_bands>
                <polymorphic_bands>181 92 73 72 60 58 55 47 46 37 34 33 33 32 23 19 18 14 13 12 11 8 7 6 6 6 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGCGT</site>
                <isoschizomers>
                    <enzyme>MluI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTACAGCTGCTCCTTGAATC</pcr_primer_p1>
		<pcr_primer_p2>AATCTCCAAACTTCCAGGTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTACAGCTGCTCCTTGAATCCCTTGTTGAGCATCTCGTCGGCCTCGTCGAGCACCAAGAGCTTGATGGCGCGAGTGCGGAGGTTACGACGGCGAATCATGTCGAAGACACGGCCAGGGGTGCCTGAGACGACGTGCTGTCCGTAGTCGAGTTTGCGAATGTCCTCGCCGAGATTGGTTCCTCCAATGCACGCGTGGCATTGGACGTTCATATAGTCTCCGAGAGCCAAGACGACCTGGAAGTTTGGAGATT</canonical_amplicon>
		<polymorphic_amplicon>GTACAGCTGCTCCTTGAATCCCTTGTTGAGCATCTCGTCGGCCTCGTCGAGCACCAAGAGCTTGATGGCGCGAGTGCGGAGGTTACGACGGCGAATCATGTCGAAGACACGGCCAGGGGTGCCTGAGACGACGTGCTGTCCGTAGTCGAGTTTGCGAATGTCCTCGCCGAGATTGGTTCCTCCAATGCAMGCGTGGCATTGGACGTTCATATAGTCTCCGAGAGCCAAGACGACCTGGAAGTTTGGAGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb49</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>90468</contig_pos>
        <strand></strand>
        <context>aaaattcctt[T/C]gaaatcgctg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATTTCTGGAAATGGAGTCTAAATTAGCTGAAAATAGCTGAAAATTCCTT</left_flank>
        <right_flank>GAAATCGCTGGAAATGGGGTCAAAAACGCTGAAATTACCTTAGTAACGGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCACTCCTCCTTATCGACGGCAACGAAGAATTGCTTGATTCCTTCAAGAGTCAACTCGTCACGTTTCACCAGAATTCTGATCGGATCCGTCATGAATTTGCTGGTCATCTCGAGAATCTCGTGTGGAAGTGTGGCGGAGAGCAACACGACCTGAGCTCCAGGTGGCAAATAGCGATAGATATCGTACAGCTGCTCCTTGAATCCCTTGTTGAGCATCTCGTCGGCCTCGTCGAGCACCAAGAGCTTGATGGCGCGAGTGCGGAGGTTACGACGGCGAATCATGTCGAAGACACGGCCAGGGGTGCCTGAGACGACGTGCTGTCCGTAGTCGAGTTTGCGAATGTCCTCGCCGAGATTGGTTCCTCCAATGCACGCGTGGCATTGGACGTTCATATAGTCTCCGAGAGCCAAGACGACCTGGAAGTTTGGAGATTTGGCTAGAAGGGAAAATTTCTGGAAATGGAGTCTAAATTAGCTGAAAATAGCTGAAAATTCCTTTGAAATCGCTGGAAATGGGGTCAAAAACGCTGAAATTACCTTAGTAACGGTCAAGGAACCACTGAATATAGGTCTAAATTAGCTATTTCCAGCGAATTCAGACCTGTTTTGAAGGGATTTCAAGCTGTTTTCCACGAATTTTGGGTCATTTTCAGCCTATTTTCAAGGTTTTAAGTCAATTTTCAGCAACAATTAGCCGTTATCTATTTGGAGACGATTTTCAGTGAATTTCTTTCCGAAAGACACTTGTTTTTCCCGCGTTTTCAGTACGAAAACGGGGTGATTTTCAGTAATTGGCTAATCGCCAAAAAAACTAGGACTGTTTTGCACCTTACAAAAATTTCAAAAGCTCCAGACGCCAGAAAACGGTCAAAATGGGCATAAATCAACAGAAAAATATGTTTTTGCACATCTTATTGACCGAAAACAGCCCTCAAATCAGGTCTAAAATCGCTGGAAACGGCTAAAATTGCCTTCAAATTCACCTAAAACTCATTCTAA</canonical>
            <polymorphic>TCCACTCCTCCTTATCGACGGCAACGAAGAATTGCTTGATTCCTTCAAGAGTCAACTCGTCACGTTTCACCAGAATTCTGATCGGATCCGTCATGAATTTGCTGGTCATCTCGAGAATCTCGTGTGGAAGTGTGGCGGAGAGCAACACGACCTGAGCTCCAGGTGGCAAATAGCGATAGATATCGTACAGCTGCTCCTTGAATCCCTTGTTGAGCATCTCGTCGGCCTCGTCGAGCACCAAGAGCTTGATGGCGCGAGTGCGGAGGTTACGACGGCGAATCATGTCGAAGACACGGCCAGGGGTGCCTGAGACGACGTGCTGTCCGTAGTCGAGTTTGCGAATGTCCTCGCCGAGATTGGTTCCTCCAATGCACGCGTGGCATTGGACGTTCATATAGTCTCCGAGAGCCAAGACGACCTGGAAGTTTGGAGATTTGGCTAGAAGGGAAAATTTCTGGAAATGGAGTCTAAATTAGCTGAAAATAGCTGAAAATTCCTTYGAAATCGCTGGAAATGGGGTCAAAAACGCTGAAATTACCTTAGTAACGGTCAAGGAACCACTGAATATAGGTCTAAATTAGCTATTTCCAGCGAATTCAGACCTGTTTTGAAGGGATTTCAAGCTGTTTTCCACGAATTTTGGGTCATTTTCAGCCTATTTTCAAGGTTTTAAGTCAATTTTCAGCAACAATTAGCCGTTATCTATTTGGAGACGATTTTCAGTGAATTTCTTTCCGAAAGACACTTGTTTTTCCCGCGTTTTCAGTACGAAAACGGGGTGATTTTCAGTAATTGGCTAATCGCCAAAAAAACTAGGACTGTTTTGCACCTTACAAAAATTTCAAAAGCTCCAGACGCCAGAAAACGGTCAAAATGGGCATAAATCAACAGAAAAATATGTTTTTGCACATCTTATTGACCGAAAACAGCCCTCAAATCAGGTCTAAAATCGCTGGAAACGGCTAAAATTGCCTTCAAATTCACCTAAAACTCATTCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGTCGAGTTTGCGAATGT</pcr_primer_p1>
		<pcr_primer_p2>TTTAGACCTATATTCAGTGGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GTAGTCGAGTTTGCGAATGTCCTCGCCGAGATTGGTTCCTCCAATGCACGCGTGGCATTGGACGTTCATATAGTCTCCGAGAGCCAAGACGACCTGGAAGTTTGGAGATTTGGCTAGAAGGGAAAATTTCTGGAAATGGAGTCTAAATTAGCTGAAAATAGCTGAAAATTCCTTTGAAATCGCTGGAAATGGGGTCAAAAACGCTGAAATTACCTTAGTAACGGTCAAGGAACCACTGAATATAGGTCTAAA</canonical_amplicon>
		<polymorphic_amplicon>GTAGTCGAGTTTGCGAATGTCCTCGCCGAGATTGGTTCCTCCAATGCACGCGTGGCATTGGACGTTCATATAGTCTCCGAGAGCCAAGACGACCTGGAAGTTTGGAGATTTGGCTAGAAGGGAAAATTTCTGGAAATGGAGTCTAAATTAGCTGAAAATAGCTGAAAATTCCTTYGAAATCGCTGGAAATGGGGTCAAAAACGCTGAAATTACCTTAGTAACGGTCAAGGAACCACTGAATATAGGTCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb50</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>90521</contig_pos>
        <strand>+</strand>
        <context>GTAACGGTCA[A/G]GGAACCACTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCGCTGGAAATGGGGTCAAAAACGCTGAAATTACCTTAGTAACGGTCA</left_flank>
        <right_flank>GGAACCACTGAATATAGGTCTAAATTAGCTATTTCCAGCGAATTCAGACC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTCGTCACGTTTCACCAGAATTCTGATCGGATCCGTCATGAATTTGCTGGTCATCTCGAGAATCTCGTGTGGAAGTGTGGCGGAGAGCAACACGACCTGAGCTCCAGGTGGCAAATAGCGATAGATATCGTACAGCTGCTCCTTGAATCCCTTGTTGAGCATCTCGTCGGCCTCGTCGAGCACCAAGAGCTTGATGGCGCGAGTGCGGAGGTTACGACGGCGAATCATGTCGAAGACACGGCCAGGGGTGCCTGAGACGACGTGCTGTCCGTAGTCGAGTTTGCGAATGTCCTCGCCGAGATTGGTTCCTCCAATGCACGCGTGGCATTGGACGTTCATATAGTCTCCGAGAGCCAAGACGACCTGGAAGTTTGGAGATTTGGCTAGAAGGGAAAATTTCTGGAAATGGAGTCTAAATTAGCTGAAAATAGCTGAAAATTCCTTTGAAATCGCTGGAAATGGGGTCAAAAACGCTGAAATTACCTTAGTAACGGTCAAGGAACCACTGAATATAGGTCTAAATTAGCTATTTCCAGCGAATTCAGACCTGTTTTGAAGGGATTTCAAGCTGTTTTCCACGAATTTTGGGTCATTTTCAGCCTATTTTCAAGGTTTTAAGTCAATTTTCAGCAACAATTAGCCGTTATCTATTTGGAGACGATTTTCAGTGAATTTCTTTCCGAAAGACACTTGTTTTTCCCGCGTTTTCAGTACGAAAACGGGGTGATTTTCAGTAATTGGCTAATCGCCAAAAAAACTAGGACTGTTTTGCACCTTACAAAAATTTCAAAAGCTCCAGACGCCAGAAAACGGTCAAAATGGGCATAAATCAACAGAAAAATATGTTTTTGCACATCTTATTGACCGAAAACAGCCCTCAAATCAGGTCTAAAATCGCTGGAAACGGCTAAAATTGCCTTCAAATTCACCTAAAACTCATTCTAAAACGTCTACAATTTAGTGGACAACTCTTCAGCTATTCTAACTTATTTTGGGAG</canonical>
            <polymorphic>AACTCGTCACGTTTCACCAGAATTCTGATCGGATCCGTCATGAATTTGCTGGTCATCTCGAGAATCTCGTGTGGAAGTGTGGCGGAGAGCAACACGACCTGAGCTCCAGGTGGCAAATAGCGATAGATATCGTACAGCTGCTCCTTGAATCCCTTGTTGAGCATCTCGTCGGCCTCGTCGAGCACCAAGAGCTTGATGGCGCGAGTGCGGAGGTTACGACGGCGAATCATGTCGAAGACACGGCCAGGGGTGCCTGAGACGACGTGCTGTCCGTAGTCGAGTTTGCGAATGTCCTCGCCGAGATTGGTTCCTCCAATGCACGCGTGGCATTGGACGTTCATATAGTCTCCGAGAGCCAAGACGACCTGGAAGTTTGGAGATTTGGCTAGAAGGGAAAATTTCTGGAAATGGAGTCTAAATTAGCTGAAAATAGCTGAAAATTCCTTTGAAATCGCTGGAAATGGGGTCAAAAACGCTGAAATTACCTTAGTAACGGTCARGGAACCACTGAATATAGGTCTAAATTAGCTATTTCCAGCGAATTCAGACCTGTTTTGAAGGGATTTCAAGCTGTTTTCCACGAATTTTGGGTCATTTTCAGCCTATTTTCAAGGTTTTAAGTCAATTTTCAGCAACAATTAGCCGTTATCTATTTGGAGACGATTTTCAGTGAATTTCTTTCCGAAAGACACTTGTTTTTCCCGCGTTTTCAGTACGAAAACGGGGTGATTTTCAGTAATTGGCTAATCGCCAAAAAAACTAGGACTGTTTTGCACCTTACAAAAATTTCAAAAGCTCCAGACGCCAGAAAACGGTCAAAATGGGCATAAATCAACAGAAAAATATGTTTTTGCACATCTTATTGACCGAAAACAGCCCTCAAATCAGGTCTAAAATCGCTGGAAACGGCTAAAATTGCCTTCAAATTCACCTAAAACTCATTCTAAAACGTCTACAATTTAGTGGACAACTCTTCAGCTATTCTAACTTATTTTGGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTTCTGGAAATGGAGTCT</pcr_primer_p1>
		<pcr_primer_p2>TGAAGAGTTGTCCACTAAATTGT</pcr_primer_p2>
		<pcr_amplicon_size>583</pcr_amplicon_size>
		<canonical_amplicon>AAAATTTCTGGAAATGGAGTCTAAATTAGCTGAAAATAGCTGAAAATTCCTTTGAAATCGCTGGAAATGGGGTCAAAAACGCTGAAATTACCTTAGTAACGGTCAAGGAACCACTGAATATAGGTCTAAATTAGCTATTTCCAGCGAATTCAGACCTGTTTTGAAGGGATTTCAAGCTGTTTTCCACGAATTTTGGGTCATTTTCAGCCTATTTTCAAGGTTTTAAGTCAATTTTCAGCAACAATTAGCCGTTATCTATTTGGAGACGATTTTCAGTGAATTTCTTTCCGAAAGACACTTGTTTTTCCCGCGTTTTCAGTACGAAAACGGGGTGATTTTCAGTAATTGGCTAATCGCCAAAAAAACTAGGACTGTTTTGCACCTTACAAAAATTTCAAAAGCTCCAGACGCCAGAAAACGGTCAAAATGGGCATAAATCAACAGAAAAATATGTTTTTGCACATCTTATTGACCGAAAACAGCCCTCAAATCAGGTCTAAAATCGCTGGAAACGGCTAAAATTGCCTTCAAATTCACCTAAAACTCATTCTAAAACGTCTACAATTTAGTGGACAACTCTTCA</canonical_amplicon>
		<polymorphic_amplicon>AAAATTTCTGGAAATGGAGTCTAAATTAGCTGAAAATAGCTGAAAATTCCTTTGAAATCGCTGGAAATGGGGTCAAAAACGCTGAAATTACCTTAGTAACGGTCARGGAACCACTGAATATAGGTCTAAATTAGCTATTTCCAGCGAATTCAGACCTGTTTTGAAGGGATTTCAAGCTGTTTTCCACGAATTTTGGGTCATTTTCAGCCTATTTTCAAGGTTTTAAGTCAATTTTCAGCAACAATTAGCCGTTATCTATTTGGAGACGATTTTCAGTGAATTTCTTTCCGAAAGACACTTGTTTTTCCCGCGTTTTCAGTACGAAAACGGGGTGATTTTCAGTAATTGGCTAATCGCCAAAAAAACTAGGACTGTTTTGCACCTTACAAAAATTTCAAAAGCTCCAGACGCCAGAAAACGGTCAAAATGGGCATAAATCAACAGAAAAATATGTTTTTGCACATCTTATTGACCGAAAACAGCCCTCAAATCAGGTCTAAAATCGCTGGAAACGGCTAAAATTGCCTTCAAATTCACCTAAAACTCATTCTAAAACGTCTACAATTTAGTGGACAACTCTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb51</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>93482</contig_pos>
        <strand>+</strand>
        <context>ACTTCCAAGC[A/G]ACACCTCTSG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCTCCAGCTGCACAGTTGGCTTTTTGGTTAACGCGCTTGACTTCCAAGC</left_flank>
        <right_flank>ACACCTCTCGAGTTCGACTCCGGGTGCCTCCAAACTCTTTTTGCTTATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCAGGAAATTTCAAATATGCTCTCTGGCCAGCTATCCAACGCCGATGTGTCCGATGTGGAAAATGAATTGGAGGAGCTATTGGCCGCCCAAGTTCCTGTAGATCTTCCAGAGGTTCCAGACCATGAAATGCCTGAAAAAGTTGCGGAAAAAGGTAAAATTTTCCGGAAAAAGATATTTTTTCAGCAAAAAATCCGAGAAATTTCAGAAAAAGAGAAGCCACGCCGCGAAAAAATCGCTCTGGAAGCCTAATCGAACATATCTTGTGAATTAATCATTTTTTTGTTTTGTTTGTATTTTTTTCTGTGAATGAATAAATATATTTATTGCTTCTCCGAATTTTTAATTTTCTTGAAGAAAATGTTTTGAAAATTGGCACAAAAATTCCCCAAATATCGCTAAAAATCTTTGATTTCCGCGCGGTTTTTATACGCCCTCCATACCATTTCTCTCCAGCTGCACAGTTGGCTTTTTGGTTAACGCGCTTGACTTCCAAGCGACACCTCTCGAGTTCGACTCCGGGTGCCTCCAAACTCTTTTTGCTTATTTTTATCGATGATTTGATATCGGAAAAGAGTTGAAAAAAAGAAAACTTAATTTTAAATGGTTAAAAAAAAGAACATCGTCAGAAATCAAATTTATTGGGACATGGTTTCTAAGCAAACATAGAGACGCAGACATCCGCACACACTCTCTGTATTATTGACTTATTGTGTCCTTTTGCGGAGATCTTTCCCCGATTTTTTTAGGAAAAATCAGAAAATTCCAGAAAAAATGACGAATACAACACGACGACGAATGCCGATAAGTGAGGAGAACGAAGGTGAGTCGCCACCAAAAGCCGCCCACTCTTATACGCACTCTAACCTCTCATATGTCAACTGCACGCTTTGTGTTTTGGCTAACGCGCCTGGCCACCAAGCGACACCTCGGGGGTTCGACCCTCACTGCTTCCAAACTCTTTATTTTCTTTTTGCTTCGTTTTCTTGACTTTAGCAT</canonical>
            <polymorphic>TTTTCAGGAAATTTCAAATATGCTCTCTGGCCAGCTATCCAACGCCGATGTGTCCGATGTGGAAAATGAATTGGAGGAGCTATTGGCCGCCCAAGTTCCTGTAGATCTTCCAGAGGTTCCAGACCATGAAATGCCTGAAAAAGTTGCGGAAAAAGGTAAAATTTTCCGGAAAAAGATATTTTTTCAGCAAAAAATCCGAGAAATTTCAGAAAAAGAGAAGCCACGCCGCGAAAAAATCGCTCTGGAAGCCTAATCGAACATATCTTGTGAATTAATCATTTTTTTGTTTTGTTTGTATTTTTTTCTGTGAATGAATAAATATATTTATTGCTTCTCCGAATTTTTAATTTTCTTGAAGAAAATGTTTTGAAAATTGGCACAAAAATTCCCCAAATATCGCTAAAAATCTTTGATTTCCGCGCGGTTTTTATACGCCCTCCATACCATTTCTCTCCAGCTGCACAGTTGGCTTTTTGGTTAACGCGCTTGACTTCCAAGCRACACCTCTCGAGTTCGACTCCGGGTGCCTCCAAACTCTTTTTGCTTATTTTTATCGATGATTTGATATCGGAAAAGAGTTGAAAAAAAGAAAACTTAATTTTAAATGGTTAAAAAAAAGAACATCGTCAGAAATCAAATTTATTGGGACATGGTTTCTAAGCAAACATAGAGACGCAGACATCCGCACACACTCTCTGTATTATTGACTTATTGTGTCCTTTTGCGGAGATCTTTCCCCGATTTTTTTAGGAAAAATCAGAAAATTCCAGAAAAAATGACGAATACAACACGACGACGAATGCCGATAAGTGAGGAGAACGAAGGTGAGTCGCCACCAAAAGCCGCCCACTCTTATACGCACTCTAACCTCTCATATGTCAACTGCACGCTTTGTGTTTTGGCTAACGCGCCTGGCCACCAAGCGACACCTCGGGGGTTCGACCCTCACTGCTTCCAAACTCTTTATTTTCTTTTTGCTTCGTTTTCTTGACTTTAGCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTCCGAATTTTTAATTTTCT</pcr_primer_p1>
		<pcr_primer_p2>ACTCTTTTCCGATATCAAATCAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTCTCCGAATTTTTAATTTTCTTGAAGAAAATGTTTTGAAAATTGGCACAAAAATTCCCCAAATATCGCTAAAAATCTTTGATTTCCGCGCGGTTTTTATACGCCCTCCATACCATTTCTCTCCAGCTGCACAGTTGGCTTTTTGGTTAACGCGCTTGACTTCCAAGCGACACCTCTCGAGTTCGACTCCGGGTGCCTCCAAACTCTTTTTGCTTATTTTTATCGATGATTTGATATCGGAAAAGAGT</canonical_amplicon>
		<polymorphic_amplicon>CTTCTCCGAATTTTTAATTTTCTTGAAGAAAATGTTTTGAAAATTGGCACAAAAATTCCCCAAATATCGCTAAAAATCTTTGATTTCCGCGCGGTTTTTATACGCCCTCCATACCATTTCTCTCCAGCTGCACAGTTGGCTTTTTGGTTAACGCGCTTGACTTCCAAGCRACACCTCTCGAGTTCGACTCCGGGTGCCTCCAAACTCTTTTTGCTTATTTTTATCGATGATTTGATATCGGAAAAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb52</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>93351</contig_pos>
        <strand>+</strand>
        <context>AAAATGTTTT[A/G]AAAATTGGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATATTTATTGCTTCTCCGAATTTTTAATTTTCTTGAAGAAAATGTTTT</left_flank>
        <right_flank>AAAATTGGCACAAAAATTCCCCAAATATCGCTAAAAATCTTTGATTTCCG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGATGAATCAACTGTTCGATATCGATGAAATCGACAAAATCATGGAGGAAACCAAGGAAGCCGCGGAGTATCAAGCGGTATGAGGAGGGACATCCGGATGCACAGATTCACAGAAATTAATTTTTAAAATTTTCAGGAAATTTCAAATATGCTCTCTGGCCAGCTATCCAACGCCGATGTGTCCGATGTGGAAAATGAATTGGAGGAGCTATTGGCCGCCCAAGTTCCTGTAGATCTTCCAGAGGTTCCAGACCATGAAATGCCTGAAAAAGTTGCGGAAAAAGGTAAAATTTTCCGGAAAAAGATATTTTTTCAGCAAAAAATCCGAGAAATTTCAGAAAAAGAGAAGCCACGCCGCGAAAAAATCGCTCTGGAAGCCTAATCGAACATATCTTGTGAATTAATCATTTTTTTGTTTTGTTTGTATTTTTTTCTGTGAATGAATAAATATATTTATTGCTTCTCCGAATTTTTAATTTTCTTGAAGAAAATGTTTTGAAAATTGGCACAAAAATTCCCCAAATATCGCTAAAAATCTTTGATTTCCGCGCGGTTTTTATACGCCCTCCATACCATTTCTCTCCAGCTGCACAGTTGGCTTTTTGGTTAACGCGCTTGACTTCCAAGCGACACCTCTCGAGTTCGACTCCGGGTGCCTCCAAACTCTTTTTGCTTATTTTTATCGATGATTTGATATCGGAAAAGAGTTGAAAAAAAGAAAACTTAATTTTAAATGGTTAAAAAAAAGAACATCGTCAGAAATCAAATTTATTGGGACATGGTTTCTAAGCAAACATAGAGACGCAGACATCCGCACACACTCTCTGTATTATTGACTTATTGTGTCCTTTTGCGGAGATCTTTCCCCGATTTTTTTAGGAAAAATCAGAAAATTCCAGAAAAAATGACGAATACAACACGACGACGAATGCCGATAAGTGAGGAGAACGAAGGTGAGTCGCCACCAAAAGCCGCCCACTCTTATACGCACTCTAACC</canonical>
            <polymorphic>GAGGATGAATCAACTGTTCGATATCGATGAAATCGACAAAATCATGGAGGAAACCAAGGAAGCCGCGGAGTATCAAGCGGTATGAGGAGGGACATCCGGATGCACAGATTCACAGAAATTAATTTTTAAAATTTTCAGGAAATTTCAAATATGCTCTCTGGCCAGCTATCCAACGCCGATGTGTCCGATGTGGAAAATGAATTGGAGGAGCTATTGGCCGCCCAAGTTCCTGTAGATCTTCCAGAGGTTCCAGACCATGAAATGCCTGAAAAAGTTGCGGAAAAAGGTAAAATTTTCCGGAAAAAGATATTTTTTCAGCAAAAAATCCGAGAAATTTCAGAAAAAGAGAAGCCACGCCGCGAAAAAATCGCTCTGGAAGCCTAATCGAACATATCTTGTGAATTAATCATTTTTTTGTTTTGTTTGTATTTTTTTCTGTGAATGAATAAATATATTTATTGCTTCTCCGAATTTTTAATTTTCTTGAAGAAAATGTTTTRAAAATTGGCACAAAAATTCCCCAAATATCGCTAAAAATCTTTGATTTCCGCGCGGTTTTTATACGCCCTCCATACCATTTCTCTCCAGCTGCACAGTTGGCTTTTTGGTTAACGCGCTTGACTTCCAAGCGACACCTCTCGAGTTCGACTCCGGGTGCCTCCAAACTCTTTTTGCTTATTTTTATCGATGATTTGATATCGGAAAAGAGTTGAAAAAAAGAAAACTTAATTTTAAATGGTTAAAAAAAAGAACATCGTCAGAAATCAAATTTATTGGGACATGGTTTCTAAGCAAACATAGAGACGCAGACATCCGCACACACTCTCTGTATTATTGACTTATTGTGTCCTTTTGCGGAGATCTTTCCCCGATTTTTTTAGGAAAAATCAGAAAATTCCAGAAAAAATGACGAATACAACACGACGACGAATGCCGATAAGTGAGGAGAACGAAGGTGAGTCGCCACCAAAAGCCGCCCACTCTTATACGCACTCTAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCCTAATCGAACATATCTTGT</pcr_primer_p1>
		<pcr_primer_p2>GTTAACCAAAAAGCCAACTGT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>AAGCCTAATCGAACATATCTTGTGAATTAATCATTTTTTTGTTTTGTTTGTATTTTTTTCTGTGAATGAATAAATATATTTATTGCTTCTCCGAATTTTTAATTTTCTTGAAGAAAATGTTTTGAAAATTGGCACAAAAATTCCCCAAATATCGCTAAAAATCTTTGATTTCCGCGCGGTTTTTATACGCCCTCCATACCATTTCTCTCCAGCTGCACAGTTGGCTTTTTGGTTAAC</canonical_amplicon>
		<polymorphic_amplicon>AAGCCTAATCGAACATATCTTGTGAATTAATCATTTTTTTGTTTTGTTTGTATTTTTTTCTGTGAATGAATAAATATATTTATTGCTTCTCCGAATTTTTAATTTTCTTGAAGAAAATGTTTTRAAAATTGGCACAAAAATTCCCCAAATATCGCTAAAAATCTTTGATTTCCGCGCGGTTTTTATACGCCCTCCATACCATTTCTCTCCAGCTGCACAGTTGGCTTTTTGGTTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb55</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>162727</contig_pos>
        <strand>+</strand>
        <context>AAGTGTCGGG[A/G]GCGGAAATGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTAGATTCATAAAAGAAAATTCTAGAAGATTTTCATTGAAGTGTCGGG</left_flank>
        <right_flank>GCGGAAATGGGATGAAAGGAAAAATGGGGTGGTGTAAAAATAACAAAATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAAAAAAATAGTTTGGGAGATGCACACAATGTTGAAAAATTGAAAAATAAAAGCCAGAGAAAAACTAATGAGTCGCAAATGAGAAAATCTCTTTGCCGCTCCTCCGATTTTTCGTTCCTTCACACCACATGTGCTTGCAATTAATTAAATTCGGTGTGGTGCGCTCCAATGGACCCCAGAAAAATAGAGAAAAATTTTCGGAAAGTTTTTGGCACCAGAGGTGGACCTTATGTTAGAAATTGACACCTGGTTACAACAACACATACAATTACATTTGTTTTCCTGGGATTACGGTAGCTCATAAGCCATATGGTGTACATTATCATCATCACAACTTGAGACAATGTTGTGTTCCGAGGCCCGGGGCATATGTTAGGTACTCAAAGTCAAAAAAGAGACTCTAATAGTGTCATTTTATTGGATATTCACACCTGCTGAAGAGGAGATTCTTAGATTCATAAAAGAAAATTCTAGAAGATTTTCATTGAAGTGTCGGGGGCGGAAATGGGATGAAAGGAAAAATGGGGTGGTGTAAAAATAACAAAATGGGTTTTTTGAGTTTCGAATTTCGAGAGGAAGGGCAAAAGGTAAATTTGGGAGATCAGGAATTTAGGGAATCGGATTTTTAGGGGTTTTTAAATTTAGGGATCCGGAAGTTTGAGATTTTATGAATTTTGAGGATCTTGGAATCTTGGATTTTTTTTTGGAAAATTGGGGTTAAGGGAGTTCGGATTTTTGAAGTTTTTGAGTTTTGGAGTTCCAGTTTAGGGATTTCAGGAAATTAGGAATTTCGATTTTTGGGATTTTTGGGATTTAGAGATCTAGAATTTTTGGGATATTAAAAGTTTAGGAACCTATGACGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTACTGAATTTCAGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTG</canonical>
            <polymorphic>TGGAAAAAAATAGTTTGGGAGATGCACACAATGTTGAAAAATTGAAAAATAAAAGCCAGAGAAAAACTAATGAGTCGCAAATGAGAAAATCTCTTTGCCGCTCCTCCGATTTTTCGTTCCTTCACACCACATGTGCTTGCAATTAATTAAATTCGGTGTGGTGCGCTCCAATGGACCCCAGAAAAATAGAGAAAAATTTTCGGAAAGTTTTTGGCACCAGAGGTGGACCTTATGTTAGAAATTGACACCTGGTTACAACAACACATACAATTACATTTGTTTTCCTGGGATTACGGTAGCTCATAAGCCATATGGTGTACATTATCATCATCACAACTTGAGACAATGTTGTGTTCCGAGGCCCGGGGCATATGTTAGGTACTCAAAGTCAAAAAAGAGACTCTAATAGTGTCATTTTATTGGATATTCACACCTGCTGAAGAGGAGATTCTTAGATTCATAAAAGAAAATTCTAGAAGATTTTCATTGAAGTGTCGGGRGCGGAAATGGGATGAAAGGAAAAATGGGGTGGTGTAAAAATAACAAAATGGGTTTTTTGAGTTTCGAATTTCGAGAGGAAGGGCAAAAGGTAAATTTGGGAGATCAGGAATTTAGGGAATCGGATTTTTAGGGGTTTTTAAATTTAGGGATCCGGAAGTTTGAGATTTTATGAATTTTGAGGATCTTGGAATCTTGGATTTTTTTTTGGAAAATTGGGGTTAAGGGAGTTCGGATTTTTGAAGTTTTTGAGTTTTGGAGTTCCAGTTTAGGGATTTCAGGAAATTAGGAATTTCGATTTTTGGGATTTTTGGGATTTAGAGATCTAGAATTTTTGGGATATTAAAAGTTTAGGAACCTATGACGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTACTGAATTTCAGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>500 402 98</canonical_bands>
                <polymorphic_bands>902 98</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAGAGGAGATTCTTAGATTCATA</pcr_primer_p1>
		<pcr_primer_p2>CAAGATCCTCAAAATTCATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGAAGAGGAGATTCTTAGATTCATAAAAGAAAATTCTAGAAGATTTTCATTGAAGTGTCGGGGGCGGAAATGGGATGAAAGGAAAAATGGGGTGGTGTAAAAATAACAAAATGGGTTTTTTGAGTTTCGAATTTCGAGAGGAAGGGCAAAAGGTAAATTTGGGAGATCAGGAATTTAGGGAATCGGATTTTTAGGGGTTTTTAAATTTAGGGATCCGGAAGTTTGAGATTTTATGAATTTTGAGGATCTTG</canonical_amplicon>
		<polymorphic_amplicon>TGAAGAGGAGATTCTTAGATTCATAAAAGAAAATTCTAGAAGATTTTCATTGAAGTGTCGGGRGCGGAAATGGGATGAAAGGAAAAATGGGGTGGTGTAAAAATAACAAAATGGGTTTTTTGAGTTTCGAATTTCGAGAGGAAGGGCAAAAGGTAAATTTGGGAGATCAGGAATTTAGGGAATCGGATTTTTAGGGGTTTTTAAATTTAGGGATCCGGAAGTTTGAGATTTTATGAATTTTGAGGATCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb58</snp_id>
        <super_contig>c000000925.Contig1</super_contig>
        <contig_pos>52605</contig_pos>
        <strand>+</strand>
        <context>acggtaACCT[C/T]CTGTATTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTGATAAAAGAAGCCCATGGGCTTCTATCAGAGGAAATACGGTAACCT</left_flank>
        <right_flank>CTGTATTTTGATGTTTACGGTAATTCCAATTATCATTTTAGCTTCCCGAT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATTTCAACAGTTGACAGATTTTTGTTATCTTTTATAGAAATTGAGATAATTGAGCTGAAAGGACAATCATCTTGGTTACTGTCATTCCTCTAATAGAAGCCCACCCTCTAATAGAAGCCCATGCGCGTTTATTAGAGAAAATAGGATAATTCAAAATTCCAGAAATTTTGGAACTGTAATTTTAGAACTCGACAATTTCTAAATTTCTAAATTTTCTAATTTCTAAATTTAAGAATTTCAGATTTTTAGAATTTTTTTTCCGGAGTTTCTAAATTCTTGAATTTTGAATTTTGAGGTTCTGGTATCTCAGAATTTCATAAATTAGGAATTTCGGTATTTAAATTGCAGAACAAACATTTCGAATTTTCCAAAACACTGAATCTCAGAATTCTTAACTTCATAATGGTCAAATTTTTGAATTTTTAATTAAAAAATTTTGAAAATAAAAATTGATAAAAGAAGCCCATGGGCTTCTATCAGAGGAAATACGGTAACCTCCTGTATTTTGATGTTTACGGTAATTCCAATTATCATTTTAGCTTCCCGATTGGACAGTTCCTGCTCGTTATTTGACAATTGAACAAATGGACAAAGAGACAACTGAATTAATATTTGGCGAATTAGAACATCTATACCCAAATGGAGGCGTTTTCTACGAGAATGGCGCGAAAGCGTTTCATATCAGCGGACCAACACCGACGAGTATAGCACAATTGGAAATTCGCAAAATGGTTTGAGATAATGTATAATTTGTTTTTGTATTTTTGTTTTCTATATATTTTATTTTCCAAATATCCGTTTCCCTTCCCCATCCATCACATCCGTTCCCAATTTTTTTTTTCAATTTCCGCAATTTTCATTTCATGTCTTTCACTATTTTTCCTATTCTCTACTAACTTTTTCTCTTTTTTCCGTCAATAAAGCTTTTTTTCTGAAAACTTTCCGAAATTTTTTTGAATTTTTTTGTTTCTGAAAACTCTTCAAAGTTCGTCAATTCC</canonical>
            <polymorphic>GCATTTCAACAGTTGACAGATTTTTGTTATCTTTTATAGAAATTGAGATAATTGAGCTGAAAGGACAATCATCTTGGTTACTGTCATTCCTCTAATAGAAGCCCACCCTCTAATAGAAGCCCATGCGCGTTTATTAGAGAAAATAGGATAATTCAAAATTCCAGAAATTTTGGAACTGTAATTTTAGAACTCGACAATTTCTAAATTTCTAAATTTTCTAATTTCTAAATTTAAGAATTTCAGATTTTTAGAATTTTTTTTCCGGAGTTTCTAAATTCTTGAATTTTGAATTTTGAGGTTCTGGTATCTCAGAATTTCATAAATTAGGAATTTCGGTATTTAAATTGCAGAACAAACATTTCGAATTTTCCAAAACACTGAATCTCAGAATTCTTAACTTCATAATGGTCAAATTTTTGAATTTTTAATTAAAAAATTTTGAAAATAAAAATTGATAAAAGAAGCCCATGGGCTTCTATCAGAGGAAATACGGTAACCTYCTGTATTTTGATGTTTACGGTAATTCCAATTATCATTTTAGCTTCCCGATTGGACAGTTCCTGCTCGTTATTTGACAATTGAACAAATGGACAAAGAGACAACTGAATTAATATTTGGCGAATTAGAACATCTATACCCAAATGGAGGCGTTTTCTACGAGAATGGCGCGAAAGCGTTTCATATCAGCGGACCAACACCGACGAGTATAGCACAATTGGAAATTCGCAAAATGGTTTGAGATAATGTATAATTTGTTTTTGTATTTTTGTTTTCTATATATTTTATTTTCCAAATATCCGTTTCCCTTCCCCATCCATCACATCCGTTCCCAATTTTTTTTTTCAATTTCCGCAATTTTCATTTCATGTCTTTCACTATTTTTCCTATTCTCTACTAACTTTTTCTCTTTTTTCCGTCAATAAAGCTTTTTTTCTGAAAACTTTCCGAAATTTTTTTGAATTTTTTTGTTTCTGAAAACTCTTCAAAGTTCGTCAATTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCTGGTATCTCAGAATTTCATA</pcr_primer_p1>
		<pcr_primer_p2>AATCGGGAAGCTAAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GTTCTGGTATCTCAGAATTTCATAAATTAGGAATTTCGGTATTTAAATTGCAGAACAAACATTTCGAATTTTCCAAAACACTGAATCTCAGAATTCTTAACTTCATAATGGTCAAATTTTTGAATTTTTAATTAAAAAATTTTGAAAATAAAAATTGATAAAAGAAGCCCATGGGCTTCTATCAGAGGAAATACGGTAACCTCCTGTATTTTGATGTTTACGGTAATTCCAATTATCATTTTAGCTTCCCGATT</canonical_amplicon>
		<polymorphic_amplicon>GTTCTGGTATCTCAGAATTTCATAAATTAGGAATTTCGGTATTTAAATTGCAGAACAAACATTTCGAATTTTCCAAAACACTGAATCTCAGAATTCTTAACTTCATAATGGTCAAATTTTTGAATTTTTAATTAAAAAATTTTGAAAATAAAAATTGATAAAAGAAGCCCATGGGCTTCTATCAGAGGAAATACGGTAACCTYCTGTATTTTGATGTTTACGGTAATTCCAATTATCATTTTAGCTTCCCGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb59</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>86898</contig_pos>
        <strand>+</strand>
        <context>CTGGAATGTG[A/G]ATCGTCACAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGGAATTCCATGTGACTAGACTTTTTGCGTCATCATTAACTGGAATGTG</left_flank>
        <right_flank>ATCGTCACATCGAACAGTTTCACGTGGAAGGGATGTCAGGTGATCCAGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCCTGATTTCGGTCCGTAAATGTACTCCGAATTGTATTCGTGTCGGGCAGCTGATTTTATATGGTTCAATTGTCTACCGATAATTGATAAACACAATTGGATGTGAAAATTGCTTCTGTTTCATTAGAGAGAGGTACTAAGCAAAAACAACTAGTTCATGTACCCTGGATTCTTAGAAAACACTTTCTTCCGGATTTTTTCTTGCTGCCAGCAAAAAATTTCGAGGATGGAATGTTAATGTGTGGAGGAGGAAAGCAGGAATCTTTTATCTTTGATCGGAATTCAAAATGTTTCCGGAAATGAAATAATTGAACGGAAGGCTCTCTTCTTCTTTTCAAATGTTGTTTGTTTCCCCAGTTTTTCAAGATGGCGCATTTCAGATGATGGCTAGATTGAAAGAAGGTTTGGAAGGGAAATACCATGGAAAAATACAAAAGTGCACGAATACAGGGAATTCCATGTGACTAGACTTTTTGCGTCATCATTAACTGGAATGTGGATCGTCACATCGAACAGTTTCACGTGGAAGGGATGTCAGGTGATCCAGAACCTTCCGAGATAGAATATGGTCCGACCCGAGCATGATGATTCATCGGTCTGGAAGAGAGTGGTCGTGTTGGGAACCGAACTTAGCGGGGGCCATTTTCAAGTATTTGACAGACTAGTTAGATGAGCTCCGCAATGGATCCTAAAGGATAATTCAAAACGTTCCTTCTAACAGAATTCGTCATTTCTACCGAATCTAAGATCAAAGCTGGTCTCTTTGTAGGTTACGATAGTCGCTATCTTTCTTTGGGAAACAGTATGATCTAGGTCTTGGATCAGAACATTCCACCATCATCTGTTCGCTCGATACACATCAAGAAGAGCTCGTGACTATATTCCATTAGTTATTCCATCATCATCATCATTACAATTTAAGAAGTGTTGATTGTTTATCCTAGTCAACCAATTTCAGAGAGGTTACAATAATTTGTCGAAAAACATTCGAACAACAAA</canonical>
            <polymorphic>TGCCTGATTTCGGTCCGTAAATGTACTCCGAATTGTATTCGTGTCGGGCAGCTGATTTTATATGGTTCAATTGTCTACCGATAATTGATAAACACAATTGGATGTGAAAATTGCTTCTGTTTCATTAGAGAGAGGTACTAAGCAAAAACAACTAGTTCATGTACCCTGGATTCTTAGAAAACACTTTCTTCCGGATTTTTTCTTGCTGCCAGCAAAAAATTTCGAGGATGGAATGTTAATGTGTGGAGGAGGAAAGCAGGAATCTTTTATCTTTGATCGGAATTCAAAATGTTTCCGGAAATGAAATAATTGAACGGAAGGCTCTCTTCTTCTTTTCAAATGTTGTTTGTTTCCCCAGTTTTTCAAGATGGCGCATTTCAGATGATGGCTAGATTGAAAGAAGGTTTGGAAGGGAAATACCATGGAAAAATACAAAAGTGCACGAATACAGGGAATTCCATGTGACTAGACTTTTTGCGTCATCATTAACTGGAATGTGRATCGTCACATCGAACAGTTTCACGTGGAAGGGATGTCAGGTGATCCAGAACCTTCCGAGATAGAATATGGTCCGACCCGAGCATGATGATTCATCGGTCTGGAAGAGAGTGGTCGTGTTGGGAACCGAACTTAGCGGGGGCCATTTTCAAGTATTTGACAGACTAGTTAGATGAGCTCCGCAATGGATCCTAAAGGATAATTCAAAACGTTCCTTCTAACAGAATTCGTCATTTCTACCGAATCTAAGATCAAAGCTGGTCTCTTTGTAGGTTACGATAGTCGCTATCTTTCTTTGGGAAACAGTATGATCTAGGTCTTGGATCAGAACATTCCACCATCATCTGTTCGCTCGATACACATCAAGAAGAGCTCGTGACTATATTCCATTAGTTATTCCATCATCATCATCATTACAATTTAAGAAGTGTTGATTGTTTATCCTAGTCAACCAATTTCAGAGAGGTTACAATAATTTGTCGAAAAACATTCGAACAACAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>274 225 180 144 62 60 42 13</canonical_bands>
                <polymorphic_bands>274 267 180 144 62 60 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTCTCTTCTTCTTTTCAAATGT</pcr_primer_p1>
		<pcr_primer_p2>CATATTCTATCTCGGAAGGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTCTCTTCTTCTTTTCAAATGTTGTTTGTTTCCCCAGTTTTTCAAGATGGCGCATTTCAGATGATGGCTAGATTGAAAGAAGGTTTGGAAGGGAAATACCATGGAAAAATACAAAAGTGCACGAATACAGGGAATTCCATGTGACTAGACTTTTTGCGTCATCATTAACTGGAATGTGGATCGTCACATCGAACAGTTTCACGTGGAAGGGATGTCAGGTGATCCAGAACCTTCCGAGATAGAATATG</canonical_amplicon>
		<polymorphic_amplicon>GCTCTCTTCTTCTTTTCAAATGTTGTTTGTTTCCCCAGTTTTTCAAGATGGCGCATTTCAGATGATGGCTAGATTGAAAGAAGGTTTGGAAGGGAAATACCATGGAAAAATACAAAAGTGCACGAATACAGGGAATTCCATGTGACTAGACTTTTTGCGTCATCATTAACTGGAATGTGRATCGTCACATCGAACAGTTTCACGTGGAAGGGATGTCAGGTGATCCAGAACCTTCCGAGATAGAATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb60</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>87110</contig_pos>
        <strand>+</strand>
        <context>TCAAAACGTT[C/T]CTTCTAACAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTAGTTAGATGAGCTCCGCAATGGATCCTAAAGGATAATTCAAAACGTT</left_flank>
        <right_flank>CTTCTAACAGAATTCGTCATTTCTACCGAATCTAAGATCAAAGCTGGTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAAATTTCGAGGATGGAATGTTAATGTGTGGAGGAGGAAAGCAGGAATCTTTTATCTTTGATCGGAATTCAAAATGTTTCCGGAAATGAAATAATTGAACGGAAGGCTCTCTTCTTCTTTTCAAATGTTGTTTGTTTCCCCAGTTTTTCAAGATGGCGCATTTCAGATGATGGCTAGATTGAAAGAAGGTTTGGAAGGGAAATACCATGGAAAAATACAAAAGTGCACGAATACAGGGAATTCCATGTGACTAGACTTTTTGCGTCATCATTAACTGGAATGTGGATCGTCACATCGAACAGTTTCACGTGGAAGGGATGTCAGGTGATCCAGAACCTTCCGAGATAGAATATGGTCCGACCCGAGCATGATGATTCATCGGTCTGGAAGAGAGTGGTCGTGTTGGGAACCGAACTTAGCGGGGGCCATTTTCAAGTATTTGACAGACTAGTTAGATGAGCTCCGCAATGGATCCTAAAGGATAATTCAAAACGTTCCTTCTAACAGAATTCGTCATTTCTACCGAATCTAAGATCAAAGCTGGTCTCTTTGTAGGTTACGATAGTCGCTATCTTTCTTTGGGAAACAGTATGATCTAGGTCTTGGATCAGAACATTCCACCATCATCTGTTCGCTCGATACACATCAAGAAGAGCTCGTGACTATATTCCATTAGTTATTCCATCATCATCATCATTACAATTTAAGAAGTGTTGATTGTTTATCCTAGTCAACCAATTTCAGAGAGGTTACAATAATTTGTCGAAAAACATTCGAACAACAAAATTTTGTAGATCCAAATTGATGACATCATGGCTGGTACACAAACCCAGAACGTCATCCGAGTCACTCAGACCAGAACGAAAATTTTTGAGTTGAACCAATTCCATCGTCATTTTCATCTTCATCGTTTATCTTAGCTGTTTCATTTGGCCCAAGCCACACCAATCATCGAACATTTTTGTAGTACTCCATATCACGAGGGAGCGTCTTCGAC</canonical>
            <polymorphic>CAAAAAATTTCGAGGATGGAATGTTAATGTGTGGAGGAGGAAAGCAGGAATCTTTTATCTTTGATCGGAATTCAAAATGTTTCCGGAAATGAAATAATTGAACGGAAGGCTCTCTTCTTCTTTTCAAATGTTGTTTGTTTCCCCAGTTTTTCAAGATGGCGCATTTCAGATGATGGCTAGATTGAAAGAAGGTTTGGAAGGGAAATACCATGGAAAAATACAAAAGTGCACGAATACAGGGAATTCCATGTGACTAGACTTTTTGCGTCATCATTAACTGGAATGTGGATCGTCACATCGAACAGTTTCACGTGGAAGGGATGTCAGGTGATCCAGAACCTTCCGAGATAGAATATGGTCCGACCCGAGCATGATGATTCATCGGTCTGGAAGAGAGTGGTCGTGTTGGGAACCGAACTTAGCGGGGGCCATTTTCAAGTATTTGACAGACTAGTTAGATGAGCTCCGCAATGGATCCTAAAGGATAATTCAAAACGTTYCTTCTAACAGAATTCGTCATTTCTACCGAATCTAAGATCAAAGCTGGTCTCTTTGTAGGTTACGATAGTCGCTATCTTTCTTTGGGAAACAGTATGATCTAGGTCTTGGATCAGAACATTCCACCATCATCTGTTCGCTCGATACACATCAAGAAGAGCTCGTGACTATATTCCATTAGTTATTCCATCATCATCATCATTACAATTTAAGAAGTGTTGATTGTTTATCCTAGTCAACCAATTTCAGAGAGGTTACAATAATTTGTCGAAAAACATTCGAACAACAAAATTTTGTAGATCCAAATTGATGACATCATGGCTGGTACACAAACCCAGAACGTCATCCGAGTCACTCAGACCAGAACGAAAATTTTTGAGTTGAACCAATTCCATCGTCATTTTCATCTTCATCGTTTATCTTAGCTGTTTCATTTGGCCCAAGCCACACCAATCATCGAACATTTTTGTAGTACTCCATATCACGAGGGAGCGTCTTCGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAACCTTCCGAGATAGAATATG</pcr_primer_p1>
		<pcr_primer_p2>GATAGCGACTATCGTAACCTACA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AGAACCTTCCGAGATAGAATATGGTCCGACCCGAGCATGATGATTCATCGGTCTGGAAGAGAGTGGTCGTGTTGGGAACCGAACTTAGCGGGGGCCATTTTCAAGTATTTGACAGACTAGTTAGATGAGCTCCGCAATGGATCCTAAAGGATAATTCAAAACGTTCCTTCTAACAGAATTCGTCATTTCTACCGAATCTAAGATCAAAGCTGGTCTCTTTGTAGGTTACGATAGTCGCTATC</canonical_amplicon>
		<polymorphic_amplicon>AGAACCTTCCGAGATAGAATATGGTCCGACCCGAGCATGATGATTCATCGGTCTGGAAGAGAGTGGTCGTGTTGGGAACCGAACTTAGCGGGGGCCATTTTCAAGTATTTGACAGACTAGTTAGATGAGCTCCGCAATGGATCCTAAAGGATAATTCAAAACGTTYCTTCTAACAGAATTCGTCATTTCTACCGAATCTAAGATCAAAGCTGGTCTCTTTGTAGGTTACGATAGTCGCTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb61</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>93475</contig_pos>
        <strand>+</strand>
        <context>ACTACACAGT[A/G]TACATCGAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTTGAGAGTGCTCGGAAATATCAATTTACATACATATTACTACACAGT</left_flank>
        <right_flank>TACATCGAGGGAACATGCTTCAGCTATTGAAAATGGTGACTACTTGCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCCGCGTTCATTTTAAAATTATTAAATTTCTTCTGGCCTACGAGTTTGCTGGGGCGCAAATTTAGTGAATATGTGGAATTTCATATTTTCAACTGAAAACATACGGAAATTTTTAATTTCAAACAACAAACTTTGAAAAGGAAATCTTCTATTTTTCCGAGCCTCTCTCCGAGAACCCTTCTATTATAGTGTCTTTCCTATCAAAGGGGTTCTTCTAATACAGGTTTTACGCTATATGAAGATCAAAACTTTGGACAAGTATTTCTCTGTTTAATATCTTAGTTCTGAATTTGTCATTTTCAGAGTTTCAGGTGAAAGCATAGTTTTGAGAAAAATATTTGCGATACAAACTTTCTTCAGCACAATTTCAGGATAGTTCTTTAAAAAAAGTAGTAGGGAATCCATTTATAAATCTCATGTTCGTTTGAAAATATGACAAAAAGTTGAAAGTTGAGAGTGCTCGGAAATATCAATTTACATACATATTACTACACAGTATACATCGAGGGAACATGCTTCAGCTATTGAAAATGGTGACTACTTGCAAAAAAAAATGGATCGAAAATATTATCTTCTGCAGTTTTCCGAAAAGCCTTACCTCTGCGATTCAGAGCGTCAGGTTAGCGTTTTTCATGGCATTCAAAGATGAATTATTTTAAGCTCTTTATTTTTCCTTTAAAATTTTGGAGGAAGTGAAAGAATTGAAAAATAGAAATTACGTAGTCATAGTGCGTTGGAATAAGAGAATAATAGAAAAAGAGAACCGTGTTGTGGCTCAAGAATTAATTGCGGAGAGAAGCTGGAAGATAGATGATCCCTCTGTTTTGGAGAACTCCATCTGCCTCTCAAGTGAGATGAATTTCTGAAGGAAAACAAGAAAAAAAGAGAATAAAGAAAAAGAAAAAGGGAAGAACTTTAGAGGTAAAGAAAAAGAAAAAAGGAATTATAAGTATTTTGAAGGAAACCTAAAAAATGACTGGGTTCCGATGGGAATGAAT</canonical>
            <polymorphic>AACCCGCGTTCATTTTAAAATTATTAAATTTCTTCTGGCCTACGAGTTTGCTGGGGCGCAAATTTAGTGAATATGTGGAATTTCATATTTTCAACTGAAAACATACGGAAATTTTTAATTTCAAACAACAAACTTTGAAAAGGAAATCTTCTATTTTTCCGAGCCTCTCTCCGAGAACCCTTCTATTATAGTGTCTTTCCTATCAAAGGGGTTCTTCTAATACAGGTTTTACGCTATATGAAGATCAAAACTTTGGACAAGTATTTCTCTGTTTAATATCTTAGTTCTGAATTTGTCATTTTCAGAGTTTCAGGTGAAAGCATAGTTTTGAGAAAAATATTTGCGATACAAACTTTCTTCAGCACAATTTCAGGATAGTTCTTTAAAAAAAGTAGTAGGGAATCCATTTATAAATCTCATGTTCGTTTGAAAATATGACAAAAAGTTGAAAGTTGAGAGTGCTCGGAAATATCAATTTACATACATATTACTACACAGTRTACATCGAGGGAACATGCTTCAGCTATTGAAAATGGTGACTACTTGCAAAAAAAAATGGATCGAAAATATTATCTTCTGCAGTTTTCCGAAAAGCCTTACCTCTGCGATTCAGAGCGTCAGGTTAGCGTTTTTCATGGCATTCAAAGATGAATTATTTTAAGCTCTTTATTTTTCCTTTAAAATTTTGGAGGAAGTGAAAGAATTGAAAAATAGAAATTACGTAGTCATAGTGCGTTGGAATAAGAGAATAATAGAAAAAGAGAACCGTGTTGTGGCTCAAGAATTAATTGCGGAGAGAAGCTGGAAGATAGATGATCCCTCTGTTTTGGAGAACTCCATCTGCCTCTCAAGTGAGATGAATTTCTGAAGGAAAACAAGAAAAAAAGAGAATAAAGAAAAAGAAAAAGGGAAGAACTTTAGAGGTAAAGAAAAAGAAAAAAGGAATTATAAGTATTTTGAAGGAAACCTAAAAAATGACTGGGTTCCGATGGGAATGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTATAC</site>
                <isoschizomers>
                    <enzyme>BssNAI</enzyme>
                    <enzyme>Bst1107I</enzyme>
                    <enzyme>BstZ17I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGAGAAAAATATTTGCGATAC</pcr_primer_p1>
		<pcr_primer_p2>AAGATAATATTTTCGATCCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGAGAAAAATATTTGCGATACAAACTTTCTTCAGCACAATTTCAGGATAGTTCTTTAAAAAAAGTAGTAGGGAATCCATTTATAAATCTCATGTTCGTTTGAAAATATGACAAAAAGTTGAAAGTTGAGAGTGCTCGGAAATATCAATTTACATACATATTACTACACAGTATACATCGAGGGAACATGCTTCAGCTATTGAAAATGGTGACTACTTGCAAAAAAAAATGGATCGAAAATATTATCTT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAGAAAAATATTTGCGATACAAACTTTCTTCAGCACAATTTCAGGATAGTTCTTTAAAAAAAGTAGTAGGGAATCCATTTATAAATCTCATGTTCGTTTGAAAATATGACAAAAAGTTGAAAGTTGAGAGTGCTCGGAAATATCAATTTACATACATATTACTACACAGTRTACATCGAGGGAACATGCTTCAGCTATTGAAAATGGTGACTACTTGCAAAAAAAAATGGATCGAAAATATTATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb62</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>93654</contig_pos>
        <strand>+</strand>
        <context>ATTTTTCCTT[A/T]AAAATTTTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTCATGGCATTCAAAGATGAATTATTTTAAGCTCTTTATTTTTCCTT</left_flank>
        <right_flank>AAAATTTTGGAGGAAGTGAAAGAATTGAAAAATAGAAATTACGTAGTCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCTATTATAGTGTCTTTCCTATCAAAGGGGTTCTTCTAATACAGGTTTTACGCTATATGAAGATCAAAACTTTGGACAAGTATTTCTCTGTTTAATATCTTAGTTCTGAATTTGTCATTTTCAGAGTTTCAGGTGAAAGCATAGTTTTGAGAAAAATATTTGCGATACAAACTTTCTTCAGCACAATTTCAGGATAGTTCTTTAAAAAAAGTAGTAGGGAATCCATTTATAAATCTCATGTTCGTTTGAAAATATGACAAAAAGTTGAAAGTTGAGAGTGCTCGGAAATATCAATTTACATACATATTACTACACAGTATACATCGAGGGAACATGCTTCAGCTATTGAAAATGGTGACTACTTGCAAAAAAAAATGGATCGAAAATATTATCTTCTGCAGTTTTCCGAAAAGCCTTACCTCTGCGATTCAGAGCGTCAGGTTAGCGTTTTTCATGGCATTCAAAGATGAATTATTTTAAGCTCTTTATTTTTCCTTTAAAATTTTGGAGGAAGTGAAAGAATTGAAAAATAGAAATTACGTAGTCATAGTGCGTTGGAATAAGAGAATAATAGAAAAAGAGAACCGTGTTGTGGCTCAAGAATTAATTGCGGAGAGAAGCTGGAAGATAGATGATCCCTCTGTTTTGGAGAACTCCATCTGCCTCTCAAGTGAGATGAATTTCTGAAGGAAAACAAGAAAAAAAGAGAATAAAGAAAAAGAAAAAGGGAAGAACTTTAGAGGTAAAGAAAAAGAAAAAAGGAATTATAAGTATTTTGAAGGAAACCTAAAAAATGACTGGGTTCCGATGGGAATGAATAAATGATTTATTGTGAGAATACGGAAAACAAAAAAGGGCAGAAAAGATACCCAGAGGATTCTTTTTCAAAACTTGACTGGTAGAAATGTCTCGTGACAGAAGCCATTTGTTCTGGCGACGAAGACGTTTTGATAGATGGAAGAAGGCTTCGTTGAAAAAAAGAGAACTAAAAAATAGAA</canonical>
            <polymorphic>CTTCTATTATAGTGTCTTTCCTATCAAAGGGGTTCTTCTAATACAGGTTTTACGCTATATGAAGATCAAAACTTTGGACAAGTATTTCTCTGTTTAATATCTTAGTTCTGAATTTGTCATTTTCAGAGTTTCAGGTGAAAGCATAGTTTTGAGAAAAATATTTGCGATACAAACTTTCTTCAGCACAATTTCAGGATAGTTCTTTAAAAAAAGTAGTAGGGAATCCATTTATAAATCTCATGTTCGTTTGAAAATATGACAAAAAGTTGAAAGTTGAGAGTGCTCGGAAATATCAATTTACATACATATTACTACACAGTATACATCGAGGGAACATGCTTCAGCTATTGAAAATGGTGACTACTTGCAAAAAAAAATGGATCGAAAATATTATCTTCTGCAGTTTTCCGAAAAGCCTTACCTCTGCGATTCAGAGCGTCAGGTTAGCGTTTTTCATGGCATTCAAAGATGAATTATTTTAAGCTCTTTATTTTTCCTTWAAAATTTTGGAGGAAGTGAAAGAATTGAAAAATAGAAATTACGTAGTCATAGTGCGTTGGAATAAGAGAATAATAGAAAAAGAGAACCGTGTTGTGGCTCAAGAATTAATTGCGGAGAGAAGCTGGAAGATAGATGATCCCTCTGTTTTGGAGAACTCCATCTGCCTCTCAAGTGAGATGAATTTCTGAAGGAAAACAAGAAAAAAAGAGAATAAAGAAAAAGAAAAAGGGAAGAACTTTAGAGGTAAAGAAAAAGAAAAAAGGAATTATAAGTATTTTGAAGGAAACCTAAAAAATGACTGGGTTCCGATGGGAATGAATAAATGATTTATTGTGAGAATACGGAAAACAAAAAAGGGCAGAAAAGATACCCAGAGGATTCTTTTTCAAAACTTGACTGGTAGAAATGTCTCGTGACAGAAGCCATTTGTTCTGGCGACGAAGACGTTTTGATAGATGGAAGAAGGCTTCGTTGAAAAAAAGAGAACTAAAAAATAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 295 205</canonical_bands>
                <polymorphic_bands>795 205</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>394 275 110 107 94 20</canonical_bands>
                <polymorphic_bands>394 275 127 110 94</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGCTATTGAAAATGGTGACTAC</pcr_primer_p1>
		<pcr_primer_p2>CACGGTTCTCTTTTTCTATTATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGCTATTGAAAATGGTGACTACTTGCAAAAAAAAATGGATCGAAAATATTATCTTCTGCAGTTTTCCGAAAAGCCTTACCTCTGCGATTCAGAGCGTCAGGTTAGCGTTTTTCATGGCATTCAAAGATGAATTATTTTAAGCTCTTTATTTTTCCTTTAAAATTTTGGAGGAAGTGAAAGAATTGAAAAATAGAAATTACGTAGTCATAGTGCGTTGGAATAAGAGAATAATAGAAAAAGAGAACCGTG</canonical_amplicon>
		<polymorphic_amplicon>CAGCTATTGAAAATGGTGACTACTTGCAAAAAAAAATGGATCGAAAATATTATCTTCTGCAGTTTTCCGAAAAGCCTTACCTCTGCGATTCAGAGCGTCAGGTTAGCGTTTTTCATGGCATTCAAAGATGAATTATTTTAAGCTCTTTATTTTTCCTTWAAAATTTTGGAGGAAGTGAAAGAATTGAAAAATAGAAATTACGTAGTCATAGTGCGTTGGAATAAGAGAATAATAGAAAAAGAGAACCGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb63</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>95830</contig_pos>
        <strand>+</strand>
        <context>GTTCATTACC[G/T]ATTTACTAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAACCTTCTTTGGGGTTCTATGGCTTAGGTTCAGAAAAAAGTTCATTACC</left_flank>
        <right_flank>ATTTACTAGGGAGAGCCAATTAATACAGAAGCTTTTTGAATGAACATGCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAATAGTTTTCGAAAAATAGTTATGGGAAGTGAGTGTAGAATACGGAATCCGGAGACAATATATTTCATGGAATCCGGACATCTCTGATGGCTAGGTTGAATATTAATTTTTTCAAATGGGTTTTTTTTTCAATTTATTACTACATAGAACTGTCTCCATTTTCACATGCTTGAAAAAACTTTTCGGATATAATAAGGTTTTCAAAAGAAACCGAACATGTGACCAGAAGCCGAATGAGCAGAAAAAGAGAACAAATGATTAGGGAATGTCACTCATTGTCTCACATATTCTCCCATCATATTGCGGTTGTCATTCATTTGTCTCAGAACCCCTCCCCTTATTATTTCTCAACACACTTTTATTACTCTCATCATCATCTCAATTCATTTCTATCCGGCTGTGGCTTATTTTCTATTGTTGCAACTTGTTGGAATTTAATTCAAATGCGAACCTTCTTTGGGGTTCTATGGCTTAGGTTCAGAAAAAAGTTCATTACCTATTTACTAGGGAGAGCCAATTAATACAGAAGCTTTTTGAATGAACATGCAGAAATAATAAGACAACAAAAATCGAAAAATACGAGAAAAACTGAGCAAAATGTCAGAAACAAACAAAATTCGGACTCATTGAGAAGGATTTCTCCTCTTCTTTTTCAGAATTCTGTTCATTTGTTTATACCGCCCAACATCTCTGGTACATCCTCAACTTTTCGCATATTTCTTACATAAGTGCATTCTTGTTGTGAAGAAATGAAAAAGACGCCGAGGAGCAAAACATTGAACAACATGAGAGACTTTCAAGTTAGTAGCAATAAGCTATAGAAACGAAATTTGACGGCATGGTCCCAAGATGATTATTCCATGTTTTCGGGGTCTTTCAATGAATACTTTTGGCAGATTGTCTGAAATGGTGTCTTAAAAGCTACAGATTTTAAAAAGACGGAAAATTGTAATTCCAATTTGAAGAGCATTTTTTTGGTCTGACCCTAATTATAAAAT</canonical>
            <polymorphic>TTAATAGTTTTCGAAAAATAGTTATGGGAAGTGAGTGTAGAATACGGAATCCGGAGACAATATATTTCATGGAATCCGGACATCTCTGATGGCTAGGTTGAATATTAATTTTTTCAAATGGGTTTTTTTTTCAATTTATTACTACATAGAACTGTCTCCATTTTCACATGCTTGAAAAAACTTTTCGGATATAATAAGGTTTTCAAAAGAAACCGAACATGTGACCAGAAGCCGAATGAGCAGAAAAAGAGAACAAATGATTAGGGAATGTCACTCATTGTCTCACATATTCTCCCATCATATTGCGGTTGTCATTCATTTGTCTCAGAACCCCTCCCCTTATTATTTCTCAACACACTTTTATTACTCTCATCATCATCTCAATTCATTTCTATCCGGCTGTGGCTTATTTTCTATTGTTGCAACTTGTTGGAATTTAATTCAAATGCGAACCTTCTTTGGGGTTCTATGGCTTAGGTTCAGAAAAAAGTTCATTACCKATTTACTAGGGAGAGCCAATTAATACAGAAGCTTTTTGAATGAACATGCAGAAATAATAAGACAACAAAAATCGAAAAATACGAGAAAAACTGAGCAAAATGTCAGAAACAAACAAAATTCGGACTCATTGAGAAGGATTTCTCCTCTTCTTTTTCAGAATTCTGTTCATTTGTTTATACCGCCCAACATCTCTGGTACATCCTCAACTTTTCGCATATTTCTTACATAAGTGCATTCTTGTTGTGAAGAAATGAAAAAGACGCCGAGGAGCAAAACATTGAACAACATGAGAGACTTTCAAGTTAGTAGCAATAAGCTATAGAAACGAAATTTGACGGCATGGTCCCAAGATGATTATTCCATGTTTTCGGGGTCTTTCAATGAATACTTTTGGCAGATTGTCTGAAATGGTGTCTTAAAAGCTACAGATTTTAAAAAGACGGAAAATTGTAATTCCAATTTGAAGAGCATTTTTTTGGTCTGACCCTAATTATAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCATCATCTCAATTCATTTCT</pcr_primer_p1>
		<pcr_primer_p2>AATTTTGTTTGTTTCTGACATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATCATCATCTCAATTCATTTCTATCCGGCTGTGGCTTATTTTCTATTGTTGCAACTTGTTGGAATTTAATTCAAATGCGAACCTTCTTTGGGGTTCTATGGCTTAGGTTCAGAAAAAAGTTCATTACCTATTTACTAGGGAGAGCCAATTAATACAGAAGCTTTTTGAATGAACATGCAGAAATAATAAGACAACAAAAATCGAAAAATACGAGAAAAACTGAGCAAAATGTCAGAAACAAACAAAATT</canonical_amplicon>
		<polymorphic_amplicon>CATCATCATCTCAATTCATTTCTATCCGGCTGTGGCTTATTTTCTATTGTTGCAACTTGTTGGAATTTAATTCAAATGCGAACCTTCTTTGGGGTTCTATGGCTTAGGTTCAGAAAAAAGTTCATTACCKATTTACTAGGGAGAGCCAATTAATACAGAAGCTTTTTGAATGAACATGCAGAAATAATAAGACAACAAAAATCGAAAAATACGAGAAAAACTGAGCAAAATGTCAGAAACAAACAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb64</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>231223</contig_pos>
        <strand>+</strand>
        <context>TCTTGGTTTT[G/T]TATGATTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTGTTTCTTCCAAAGCTAAAAAGATGTTAGTTAGGAAGATCTTGGTTTT</left_flank>
        <right_flank>TATGATTTTACCGGCTCAAAAAAGTTGAAGTTAAGGAGAACAGACAATCG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTTGTACTAAAGAAAGTCCATCACTGGCATACGGTAGAATCATTCCAAGAATTAGAAACATTTCAGGCGATGTAGATAAAAACATGAGAGCAATTGTGATAAAAGTTCCAGCTATTTGAACACAACATGTGATAGACATTATAACAAGGAAATTGGATTCAGCCTTCTTCCTTTGAATACTTAAACTTCTTAGAAATATAACACTCGCCGTATTGCATATGACACACAGTACAGTTGTGAGGAACATAAATGGAATCAGAATTGCGTAGATGTCCCCGGCTGGCTAGAATTCGTTTTGTAGAAAAAACAACGAGTAAAAACAAACCACAGCAGGCGCCACCAGAGAAAATGAATCGTCTTCTAGAAGAACAATTTCAACTTCATGGTTAAAAACGATATGAGTACTCAGAAAAGGAAGAAAGTAGATCAAAAGAATGACAATCCAGGTGTGTTTCTTCCAAAGCTAAAAAGATGTTAGTTAGGAAGATCTTGGTTTTTTATGATTTTACCGGCTCAAAAAAGTTGAAGTTAAGGAGAACAGACAATCGATTCAAAGAGACCAAAGCACTGATTGAATATTGTACATAAGCCATATGGGTAGCCATAGTTCCAATGAACTTCAAAGATATGTAGTTACCTAAAACTTCCCCTAAACCCGGTTTCATTGAAAAATCTTACCAATATTTTTGTAAAAAGGAGCCATTAAGCAATCATAACATGTTACACTGTTCAATCTCATTGTGAAGAAACCAATTGTATATGTGAAAAGATTCATAACTCCGTCATAAAAATAAATATTGAAAAAGGAGGAATCAAACGTTTTCTTTTTAGTTTTGATAACATAAAATGTTAGAAAATAAAGAATAACAGACGGAAATCCATAGCAAACGGATGCTAAAAAAAATATAAACGGGGTAGACATTTTCAGCAAAACGAACCCAGTCGAAATGGATTCCAGTCAAAAAAATAACTGTGGGAAGATAAATTATTATAGGTAA</canonical>
            <polymorphic>AGGTTGTACTAAAGAAAGTCCATCACTGGCATACGGTAGAATCATTCCAAGAATTAGAAACATTTCAGGCGATGTAGATAAAAACATGAGAGCAATTGTGATAAAAGTTCCAGCTATTTGAACACAACATGTGATAGACATTATAACAAGGAAATTGGATTCAGCCTTCTTCCTTTGAATACTTAAACTTCTTAGAAATATAACACTCGCCGTATTGCATATGACACACAGTACAGTTGTGAGGAACATAAATGGAATCAGAATTGCGTAGATGTCCCCGGCTGGCTAGAATTCGTTTTGTAGAAAAAACAACGAGTAAAAACAAACCACAGCAGGCGCCACCAGAGAAAATGAATCGTCTTCTAGAAGAACAATTTCAACTTCATGGTTAAAAACGATATGAGTACTCAGAAAAGGAAGAAAGTAGATCAAAAGAATGACAATCCAGGTGTGTTTCTTCCAAAGCTAAAAAGATGTTAGTTAGGAAGATCTTGGTTTTKTATGATTTTACCGGCTCAAAAAAGTTGAAGTTAAGGAGAACAGACAATCGATTCAAAGAGACCAAAGCACTGATTGAATATTGTACATAAGCCATATGGGTAGCCATAGTTCCAATGAACTTCAAAGATATGTAGTTACCTAAAACTTCCCCTAAACCCGGTTTCATTGAAAAATCTTACCAATATTTTTGTAAAAAGGAGCCATTAAGCAATCATAACATGTTACACTGTTCAATCTCATTGTGAAGAAACCAATTGTATATGTGAAAAGATTCATAACTCCGTCATAAAAATAAATATTGAAAAAGGAGGAATCAAACGTTTTCTTTTTAGTTTTGATAACATAAAATGTTAGAAAATAAAGAATAACAGACGGAAATCCATAGCAAACGGATGCTAAAAAAAATATAAACGGGGTAGACATTTTCAGCAAAACGAACCCAGTCGAAATGGATTCCAGTCAAAAAAATAACTGTGGGAAGATAAATTATTATAGGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTCATGGTTAAAAACGATATG</pcr_primer_p1>
		<pcr_primer_p2>CTTTGAAGTTCATTGGAACTATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACTTCATGGTTAAAAACGATATGAGTACTCAGAAAAGGAAGAAAGTAGATCAAAAGAATGACAATCCAGGTGTGTTTCTTCCAAAGCTAAAAAGATGTTAGTTAGGAAGATCTTGGTTTTTTATGATTTTACCGGCTCAAAAAAGTTGAAGTTAAGGAGAACAGACAATCGATTCAAAGAGACCAAAGCACTGATTGAATATTGTACATAAGCCATATGGGTAGCCATAGTTCCAATGAACTTCAAAG</canonical_amplicon>
		<polymorphic_amplicon>ACTTCATGGTTAAAAACGATATGAGTACTCAGAAAAGGAAGAAAGTAGATCAAAAGAATGACAATCCAGGTGTGTTTCTTCCAAAGCTAAAAAGATGTTAGTTAGGAAGATCTTGGTTTTKTATGATTTTACCGGCTCAAAAAAGTTGAAGTTAAGGAGAACAGACAATCGATTCAAAGAGACCAAAGCACTGATTGAATATTGTACATAAGCCATATGGGTAGCCATAGTTCCAATGAACTTCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb65</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>233503</contig_pos>
        <strand>+</strand>
        <context>AATCGGATAA[C/T]AAACTTTTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAGTCAAGCACAAACTTGCTTGATTAGTAGAACGAACCGAATCGGATAA</left_flank>
        <right_flank>AAACTTTTGGGGCTGTATGGTTCAATTTGTAAAAGATTCTGATCTGGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATAAGCCATATGATAAAACATAGTTAATACAAACTTCAAAGATATATAGCCGGCTAAAAATTTTGTCTAAAAGTCGATTTGATTAGGATATCTAACCTATGCTTCTGTAGAAAGGAGCCATCAAACAATCGAAGCATGTTATACTGTCTAATCTCAATGTAAAAAAGCCAAGAGTATAAGTGAACAGGTTCATAATCCCATCATAAATGTATATATGGAAAAAAGATGAGTCAAACGTTTTTTTGTTAGTTTTGATAACATAAATAGTTAGGATATAAAGAGCAACTGACGGAACGCCGTAAAAAACAGATGCTATGAAAGATATAACCGCAGCAGACATTTTTTACGAAATGCAATTTATTTTAGGTCGAATAAATAACTGCTGGAGAAAGAGCCTTTTGTGCCTTGAGGCACGTGACACTTTCAGAATATCTTAGCAGATATTGTCTAGTCAAGCACAAACTTGCTTGATTAGTAGAACGAACCGAATCGGATAACAAACTTTTGGGGCTGTATGGTTCAATTTGTAAAAGATTCTGATCTGGAAAAGTTTGTTTCTTAATATCTAGCAGTGATACTCACTGCAGTGCTGAAACACATCAAAAGCCATGGTTGGACCAGAGACCATCCATCGCTAGTGAATGGGGTAATTAGAGAAAATTTCATGAGCAAAGGAGACACTTCTAGAATAGCCAAGGGTATTGTAATCATGGTACCAACCAATTGAAAAATACAAGTTAAAAAACACACTAGCGATGTTGAACATAATGGTAATAGCCATTGTGATAACCATGAATGGGATTAAGACCGAAAATATGTCCAAGACAGGCTGGAATGACCGAATCGATTACAAACATCTCTCAAGACTACCATACCATTTGTGAAGAAACCAGGGAGTACTGATCTACATTTTCTAAACATGTTGTTTCTGCTTGGTAATGAAACACCACATTCGTATTGAGAAACGGAGAAAAGTAGATTGCAATAATCAAAATCCA</canonical>
            <polymorphic>ACATAAGCCATATGATAAAACATAGTTAATACAAACTTCAAAGATATATAGCCGGCTAAAAATTTTGTCTAAAAGTCGATTTGATTAGGATATCTAACCTATGCTTCTGTAGAAAGGAGCCATCAAACAATCGAAGCATGTTATACTGTCTAATCTCAATGTAAAAAAGCCAAGAGTATAAGTGAACAGGTTCATAATCCCATCATAAATGTATATATGGAAAAAAGATGAGTCAAACGTTTTTTTGTTAGTTTTGATAACATAAATAGTTAGGATATAAAGAGCAACTGACGGAACGCCGTAAAAAACAGATGCTATGAAAGATATAACCGCAGCAGACATTTTTTACGAAATGCAATTTATTTTAGGTCGAATAAATAACTGCTGGAGAAAGAGCCTTTTGTGCCTTGAGGCACGTGACACTTTCAGAATATCTTAGCAGATATTGTCTAGTCAAGCACAAACTTGCTTGATTAGTAGAACGAACCGAATCGGATAAYAAACTTTTGGGGCTGTATGGTTCAATTTGTAAAAGATTCTGATCTGGAAAAGTTTGTTTCTTAATATCTAGCAGTGATACTCACTGCAGTGCTGAAACACATCAAAAGCCATGGTTGGACCAGAGACCATCCATCGCTAGTGAATGGGGTAATTAGAGAAAATTTCATGAGCAAAGGAGACACTTCTAGAATAGCCAAGGGTATTGTAATCATGGTACCAACCAATTGAAAAATACAAGTTAAAAAACACACTAGCGATGTTGAACATAATGGTAATAGCCATTGTGATAACCATGAATGGGATTAAGACCGAAAATATGTCCAAGACAGGCTGGAATGACCGAATCGATTACAAACATCTCTCAAGACTACCATACCATTTGTGAAGAAACCAGGGAGTACTGATCTACATTTTCTAAACATGTTGTTTCTGCTTGGTAATGAAACACCACATTCGTATTGAGAAACGGAGAAAAGTAGATTGCAATAATCAAAATCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTGACACTTTCAGAATATCTTAG</pcr_primer_p1>
		<pcr_primer_p2>AATTTTCTCTAATTACCCCATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGTGACACTTTCAGAATATCTTAGCAGATATTGTCTAGTCAAGCACAAACTTGCTTGATTAGTAGAACGAACCGAATCGGATAACAAACTTTTGGGGCTGTATGGTTCAATTTGTAAAAGATTCTGATCTGGAAAAGTTTGTTTCTTAATATCTAGCAGTGATACTCACTGCAGTGCTGAAACACATCAAAAGCCATGGTTGGACCAGAGACCATCCATCGCTAGTGAATGGGGTAATTAGAGAAAATT</canonical_amplicon>
		<polymorphic_amplicon>CGTGACACTTTCAGAATATCTTAGCAGATATTGTCTAGTCAAGCACAAACTTGCTTGATTAGTAGAACGAACCGAATCGGATAAYAAACTTTTGGGGCTGTATGGTTCAATTTGTAAAAGATTCTGATCTGGAAAAGTTTGTTTCTTAATATCTAGCAGTGATACTCACTGCAGTGCTGAAACACATCAAAAGCCATGGTTGGACCAGAGACCATCCATCGCTAGTGAATGGGGTAATTAGAGAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb66</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>437637</contig_pos>
        <strand></strand>
        <context>TCCCCCTTTT[C/T]CCCCAAAAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAAAAGGGGAACAAAAAAGGCCGCAAGCTGACCGTCGTTTCCCCCTTTT</left_flank>
        <right_flank>CCCCAAAAACATCTCTCTATGTCCACAAACTACTGGACATTGAGAGAACG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCAAGAATACCCCTCCCCGGTCATACATTGTCCTTCATCTTTTTTCTATTGTTTTGCTTCTTTACTCCTCCCACATCCTTCACTTCTCCTTCCTCTTTTTCTTGAGTATCGCTGATTCTTTTTCTGTTTCTTTCCTGCGTGGTTATTATGGTTTTACCATCATCCTGCCATCACCCGAAAGGGTCGAAAACACAGAAAATCCCGCCGATTTTAGTGGTTACTGCCCCTTTTGTGAGTCATTCTCTTCCATTTTTGGAGATCGACCTTCTTTTTCTTCTTTCAAAAACAACCGGGTCATCTCCGGTTGACAAACAAAAAGAGGCTCACATATTAGGGCTAAAGTTTCTCTCTTCCTCCTTTCCTCCGATCTGAGATATATAGAGCTCTGACCCCGTCGTCGTCACAAATCAAATAAATCTCAACTCATCAAGTGCACCGGCTACTTCTCAAAAAGGGGAACAAAAAAGGCCGCAAGCTGACCGTCGTTTCCCCCTTTTCCCCCAAAAACATCTCTCTATGTCCACAAACTACTGGACATTGAGAGAACGAGAGCTTCTCCTCTTCCGAGAAGAAGCATATAGCACATCCGATCGAAATGGACACCACTGTCTTCTCTTGGGGAATGTTCCTTGATGAATGCCCCCTTCCGCCAACACATTGTTCAGGTGTGAATGAATGAATAAGTCGGTGCTATACTAGCTTAGTTTTGCTCTATTCCCTGTCCCCATTCTCGCGATTGTCAACAGATTTTCTGCCAATTGGACGCCAAAAACTGTATTTACTACCTTTTGTTTTTTCCCTGACTAAGAGAAATTAATAGAACCATGAGAATGTTTTTAAACAACAGGAAACTACCTTTTTTTCAAATAATTACTTTCTTGGGAAGTCAGAAAAGTTATTTCTGGCCGTTCCGTTCTTCTATTCCAAAAACCTTTCTAGGTTATCATCTTTCTCTTTTTGTCTAAATAACGACCTTCGCTCGGAAGTGTCAACAGTAA</canonical>
            <polymorphic>ACTCAAGAATACCCCTCCCCGGTCATACATTGTCCTTCATCTTTTTTCTATTGTTTTGCTTCTTTACTCCTCCCACATCCTTCACTTCTCCTTCCTCTTTTTCTTGAGTATCGCTGATTCTTTTTCTGTTTCTTTCCTGCGTGGTTATTATGGTTTTACCATCATCCTGCCATCACCCGAAAGGGTCGAAAACACAGAAAATCCCGCCGATTTTAGTGGTTACTGCCCCTTTTGTGAGTCATTCTCTTCCATTTTTGGAGATCGACCTTCTTTTTCTTCTTTCAAAAACAACCGGGTCATCTCCGGTTGACAAACAAAAAGAGGCTCACATATTAGGGCTAAAGTTTCTCTCTTCCTCCTTTCCTCCGATCTGAGATATATAGAGCTCTGACCCCGTCGTCGTCACAAATCAAATAAATCTCAACTCATCAAGTGCACCGGCTACTTCTCAAAAAGGGGAACAAAAAAGGCCGCAAGCTGACCGTCGTTTCCCCCTTTTYCCCCAAAAACATCTCTCTATGTCCACAAACTACTGGACATTGAGAGAACGAGAGCTTCTCCTCTTCCGAGAAGAAGCATATAGCACATCCGATCGAAATGGACACCACTGTCTTCTCTTGGGGAATGTTCCTTGATGAATGCCCCCTTCCGCCAACACATTGTTCAGGTGTGAATGAATGAATAAGTCGGTGCTATACTAGCTTAGTTTTGCTCTATTCCCTGTCCCCATTCTCGCGATTGTCAACAGATTTTCTGCCAATTGGACGCCAAAAACTGTATTTACTACCTTTTGTTTTTTCCCTGACTAAGAGAAATTAATAGAACCATGAGAATGTTTTTAAACAACAGGAAACTACCTTTTTTTCAAATAATTACTTTCTTGGGAAGTCAGAAAAGTTATTTCTGGCCGTTCCGTTCTTCTATTCCAAAAACCTTTCTAGGTTATCATCTTTCTCTTTTTGTCTAAATAACGACCTTCGCTCGGAAGTGTCAACAGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTTCTCTCTTCCTCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>GGATGTGCTATATGCTTCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGTTTCTCTCTTCCTCCTTTCCTCCGATCTGAGATATATAGAGCTCTGACCCCGTCGTCGTCACAAATCAAATAAATCTCAACTCATCAAGTGCACCGGCTACTTCTCAAAAAGGGGAACAAAAAAGGCCGCAAGCTGACCGTCGTTTCCCCCTTTTCCCCCAAAAACATCTCTCTATGTCCACAAACTACTGGACATTGAGAGAACGAGAGCTTCTCCTCTTCCGAGAAGAAGCATATAGCACATCC</canonical_amplicon>
		<polymorphic_amplicon>AAGTTTCTCTCTTCCTCCTTTCCTCCGATCTGAGATATATAGAGCTCTGACCCCGTCGTCGTCACAAATCAAATAAATCTCAACTCATCAAGTGCACCGGCTACTTCTCAAAAAGGGGAACAAAAAAGGCCGCAAGCTGACCGTCGTTTCCCCCTTTTYCCCCAAAAACATCTCTCTATGTCCACAAACTACTGGACATTGAGAGAACGAGAGCTTCTCCTCTTCCGAGAAGAAGCATATAGCACATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb67</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>461576</contig_pos>
        <strand>+</strand>
        <context>TCAAAAATCG[A/G]CAAACGCAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACCAGACAAAATAGTAATAGTTAGTTAATACCAGTCATTCAAAAATCG</left_flank>
        <right_flank>CAAACGCAGCAGAGAACTTCACATGGAAATAGACACAAATTAAGAGATCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGCTTCATGGAAATTCATTTAGCAATGTTTACCTTAATAAGCCTGAAAGAGGAAAATGCTGAAACAGCGAGTGTATTGCTCAGTGTGATTCCAGGATAACCATGTTTCAAAAAGAACTGGATACTGTAGATTACAATGAATAACAAAACGATTTCAGGTCTGATTGTAAAACAAGGCAAAAAATTCAGCTTGTTCTAATAGTAAGATACTCTTGACAGTATATTCTTTCCGAATCTCTTGTCGATCCATTTATCACCATGGTTTGATATTAGTTTGAAATTCTGCATGCATAATACAATTGCCCACAAATGCTGTTTTCGAAAGAAAAGCCAGTTTCTTGTGTTCTGGACCTTTATAAATTAATTTTCACACGACTTCTCTTATTCATAAAAGTTTGAATAGTAGGCAATTAGCTTTCAACATTTATTTTCAGATAAAGCTCCCGTTAAAACCAGACAAAATAGTAATAGTTAGTTAATACCAGTCATTCAAAAATCGGCAAACGCAGCAGAGAACTTCACATGGAAATAGACACAAATTAAGAGATCAATTAGAGGAGAAACACTTCGATACGAAGTACAGAAATGATTTAAGGTTCGTGCTCAGCTGCTTTCGTTTTCTGCATCATTTTTCGCATAGTGTTACGGAAGTTTTTGTTCAGACACATGTAAATCAATGGATTGAAGCATGAGTGAGCGTATCCTGGAAATAAATTTTTCAGAGTTTTCATTTGGAGATCGATTAGACAAACCTAGCCACGAGGTATAGACAAACAATGTGAGATGAAGTGGAGTGTTGATATTCATGTGGAAACCCATCAGAACTCCACGGAAGATAGAAATACAGAAGTATGGAATCCAGCAGATGAGAAATGCAACTGCAAAGATTATTTTTACATGATTTCTATTACAAGAACTTACTAAGAATTGCTGCTACAACTCTAGTAGCCCTCGACTCTCTTCTGATTGCCATCGATTCTCTTCTCTTTCTTCTTATTGC</canonical>
            <polymorphic>TCGCTTCATGGAAATTCATTTAGCAATGTTTACCTTAATAAGCCTGAAAGAGGAAAATGCTGAAACAGCGAGTGTATTGCTCAGTGTGATTCCAGGATAACCATGTTTCAAAAAGAACTGGATACTGTAGATTACAATGAATAACAAAACGATTTCAGGTCTGATTGTAAAACAAGGCAAAAAATTCAGCTTGTTCTAATAGTAAGATACTCTTGACAGTATATTCTTTCCGAATCTCTTGTCGATCCATTTATCACCATGGTTTGATATTAGTTTGAAATTCTGCATGCATAATACAATTGCCCACAAATGCTGTTTTCGAAAGAAAAGCCAGTTTCTTGTGTTCTGGACCTTTATAAATTAATTTTCACACGACTTCTCTTATTCATAAAAGTTTGAATAGTAGGCAATTAGCTTTCAACATTTATTTTCAGATAAAGCTCCCGTTAAAACCAGACAAAATAGTAATAGTTAGTTAATACCAGTCATTCAAAAATCGRCAAACGCAGCAGAGAACTTCACATGGAAATAGACACAAATTAAGAGATCAATTAGAGGAGAAACACTTCGATACGAAGTACAGAAATGATTTAAGGTTCGTGCTCAGCTGCTTTCGTTTTCTGCATCATTTTTCGCATAGTGTTACGGAAGTTTTTGTTCAGACACATGTAAATCAATGGATTGAAGCATGAGTGAGCGTATCCTGGAAATAAATTTTTCAGAGTTTTCATTTGGAGATCGATTAGACAAACCTAGCCACGAGGTATAGACAAACAATGTGAGATGAAGTGGAGTGTTGATATTCATGTGGAAACCCATCAGAACTCCACGGAAGATAGAAATACAGAAGTATGGAATCCAGCAGATGAGAAATGCAACTGCAAAGATTATTTTTACATGATTTCTATTACAAGAACTTACTAAGAATTGCTGCTACAACTCTAGTAGCCCTCGACTCTCTTCTGATTGCCATCGATTCTCTTCTCTTTCTTCTTATTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>494 441 65</canonical_bands>
                <polymorphic_bands>935 65</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGCTTTCAACATTTATTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>GAACAAAAACTTCCGTAACACTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAGCTTTCAACATTTATTTTCAGATAAAGCTCCCGTTAAAACCAGACAAAATAGTAATAGTTAGTTAATACCAGTCATTCAAAAATCGGCAAACGCAGCAGAGAACTTCACATGGAAATAGACACAAATTAAGAGATCAATTAGAGGAGAAACACTTCGATACGAAGTACAGAAATGATTTAAGGTTCGTGCTCAGCTGCTTTCGTTTTCTGCATCATTTTTCGCATAGTGTTACGGAAGTTTTTGTTC</canonical_amplicon>
		<polymorphic_amplicon>TTAGCTTTCAACATTTATTTTCAGATAAAGCTCCCGTTAAAACCAGACAAAATAGTAATAGTTAGTTAATACCAGTCATTCAAAAATCGRCAAACGCAGCAGAGAACTTCACATGGAAATAGACACAAATTAAGAGATCAATTAGAGGAGAAACACTTCGATACGAAGTACAGAAATGATTTAAGGTTCGTGCTCAGCTGCTTTCGTTTTCTGCATCATTTTTCGCATAGTGTTACGGAAGTTTTTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb68</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>461430</contig_pos>
        <strand>+</strand>
        <context>TTCTGGACCT[C/T]TATAAATTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCACAAATGCTGTTTTCGAAAGAAAAGCCAGTTTCTTGTGTTCTGGACCT</left_flank>
        <right_flank>TATAAATTAATTTTCACACGACTTCTCTTATTCATAAAAGTTTGAATAGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACCATTCGAAGTGACACTCAACAGCTCTGAATGGAGCTAAGAAGGCGAAATAAAAGTGTATTTCAAATGTTTACTTTGACAAGATGTGAGAAATCATAGTACAGAAAGAATATAAGTAGTCGCTGTTCCTCGAAGTAATTTTGGTTCGCTTCATGGAAATTCATTTAGCAATGTTTACCTTAATAAGCCTGAAAGAGGAAAATGCTGAAACAGCGAGTGTATTGCTCAGTGTGATTCCAGGATAACCATGTTTCAAAAAGAACTGGATACTGTAGATTACAATGAATAACAAAACGATTTCAGGTCTGATTGTAAAACAAGGCAAAAAATTCAGCTTGTTCTAATAGTAAGATACTCTTGACAGTATATTCTTTCCGAATCTCTTGTCGATCCATTTATCACCATGGTTTGATATTAGTTTGAAATTCTGCATGCATAATACAATTGCCCACAAATGCTGTTTTCGAAAGAAAAGCCAGTTTCTTGTGTTCTGGACCTTTATAAATTAATTTTCACACGACTTCTCTTATTCATAAAAGTTTGAATAGTAGGCAATTAGCTTTCAACATTTATTTTCAGATAAAGCTCCCGTTAAAACCAGACAAAATAGTAATAGTTAGTTAATACCAGTCATTCAAAAATCGGCAAACGCAGCAGAGAACTTCACATGGAAATAGACACAAATTAAGAGATCAATTAGAGGAGAAACACTTCGATACGAAGTACAGAAATGATTTAAGGTTCGTGCTCAGCTGCTTTCGTTTTCTGCATCATTTTTCGCATAGTGTTACGGAAGTTTTTGTTCAGACACATGTAAATCAATGGATTGAAGCATGAGTGAGCGTATCCTGGAAATAAATTTTTCAGAGTTTTCATTTGGAGATCGATTAGACAAACCTAGCCACGAGGTATAGACAAACAATGTGAGATGAAGTGGAGTGTTGATATTCATGTGGAAACCCATCAGAACTCCACGGAAGATAGAAATACAGAAGTATG</canonical>
            <polymorphic>TACCATTCGAAGTGACACTCAACAGCTCTGAATGGAGCTAAGAAGGCGAAATAAAAGTGTATTTCAAATGTTTACTTTGACAAGATGTGAGAAATCATAGTACAGAAAGAATATAAGTAGTCGCTGTTCCTCGAAGTAATTTTGGTTCGCTTCATGGAAATTCATTTAGCAATGTTTACCTTAATAAGCCTGAAAGAGGAAAATGCTGAAACAGCGAGTGTATTGCTCAGTGTGATTCCAGGATAACCATGTTTCAAAAAGAACTGGATACTGTAGATTACAATGAATAACAAAACGATTTCAGGTCTGATTGTAAAACAAGGCAAAAAATTCAGCTTGTTCTAATAGTAAGATACTCTTGACAGTATATTCTTTCCGAATCTCTTGTCGATCCATTTATCACCATGGTTTGATATTAGTTTGAAATTCTGCATGCATAATACAATTGCCCACAAATGCTGTTTTCGAAAGAAAAGCCAGTTTCTTGTGTTCTGGACCTYTATAAATTAATTTTCACACGACTTCTCTTATTCATAAAAGTTTGAATAGTAGGCAATTAGCTTTCAACATTTATTTTCAGATAAAGCTCCCGTTAAAACCAGACAAAATAGTAATAGTTAGTTAATACCAGTCATTCAAAAATCGGCAAACGCAGCAGAGAACTTCACATGGAAATAGACACAAATTAAGAGATCAATTAGAGGAGAAACACTTCGATACGAAGTACAGAAATGATTTAAGGTTCGTGCTCAGCTGCTTTCGTTTTCTGCATCATTTTTCGCATAGTGTTACGGAAGTTTTTGTTCAGACACATGTAAATCAATGGATTGAAGCATGAGTGAGCGTATCCTGGAAATAAATTTTTCAGAGTTTTCATTTGGAGATCGATTAGACAAACCTAGCCACGAGGTATAGACAAACAATGTGAGATGAAGTGGAGTGTTGATATTCATGTGGAAACCCATCAGAACTCCACGGAAGATAGAAATACAGAAGTATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCACCATGGTTTGATATTAGTTT</pcr_primer_p1>
		<pcr_primer_p2>CGATTTTTGAATGACTGGTATTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCACCATGGTTTGATATTAGTTTGAAATTCTGCATGCATAATACAATTGCCCACAAATGCTGTTTTCGAAAGAAAAGCCAGTTTCTTGTGTTCTGGACCTTTATAAATTAATTTTCACACGACTTCTCTTATTCATAAAAGTTTGAATAGTAGGCAATTAGCTTTCAACATTTATTTTCAGATAAAGCTCCCGTTAAAACCAGACAAAATAGTAATAGTTAGTTAATACCAGTCATTCAAAAATCG</canonical_amplicon>
		<polymorphic_amplicon>TCACCATGGTTTGATATTAGTTTGAAATTCTGCATGCATAATACAATTGCCCACAAATGCTGTTTTCGAAAGAAAAGCCAGTTTCTTGTGTTCTGGACCTYTATAAATTAATTTTCACACGACTTCTCTTATTCATAAAAGTTTGAATAGTAGGCAATTAGCTTTCAACATTTATTTTCAGATAAAGCTCCCGTTAAAACCAGACAAAATAGTAATAGTTAGTTAATACCAGTCATTCAAAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb69</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>484443</contig_pos>
        <strand>+</strand>
        <context>TCATGCATTC[C/G]TCCTTGGAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCCAACGTTCATGCTTAATCAACCGTCCACTATAATGGGATCATGCATTC</left_flank>
        <right_flank>TCCTTGGAGCTGATTCCTTTTTTTCTTCCCACCGAAAAATACCTCCCTGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGTATTCAAGTCTAGCGGAAATATGTGAGAATCAGACAATTAGTATATTGTTATGACTGTATATTAGAAGAGCTAGATGAAGTTCAGACTTTTGTTTCAGATCAGTTGATGGGGCTATATAACCTGGGGTTTCTGCTGATCCAACAGCTCCTGGCAAGCAGCAAGTATCAAGCTCTAAATGTAAAAAAGAGAATTTTCTACTTTCATCAGTAAAAATGGTGAAAATTTGATTGTCTACATGAAATACGTGTATTTCAACTAACGCTGTAACTTTACAACACTTTGGAAATCCCTTCCATGAAACCTTTCTTCCATACCGATCATTAATTTGAGGAATTTTTGATGGTTACGTAACTCAACAAGGAACCGTTTACTTTGTTAAAACACGGTTGGATGAGTTTCGAAACATGATCATGTCATTTGTTACTCATGGCGGTCTCTATTATTTCCAACGTTCATGCTTAATCAACCGTCCACTATAATGGGATCATGCATTCCTCCTTGGAGCTGATTCCTTTTTTTCTTCCCACCGAAAAATACCTCCCTGCTTGTTTTTTTCATGTTCTTCAAGACACCCAGTATACCTATTTCATTACAAATGGCACAACATACACAAGACACAATGAAGATGGGTGAACTTGCTTCGACGTCTGTCATAATGAGAAATTTCACTTGCACTTATATGACTTTCCAATACACGACCAACCGCCAAGAAAAGAATTTAGAAGAAGTGAGAAGTTGGAGGAGGGGGATGAACAGCGGGCGGCGTCAACGGTAGAAAGGTGTAATATTGTGACGAAGGCGAGGGTGAGGAGAATGTATAAAAGAAGTGGCTGGTGACTGTCAAACCGTCAGTTCTTCAGACATGGAGTTTGAGCAACGCATCAAAGCCTACCGCTTCGTGGCCTATTCGGCTGTCGCTTTCTCGGTTGTTGCCGTTCTTTCGGTATGCATCACTCTTCCAATGGTGCACAACTATGTTCACCATGTCAAGAGAA</canonical>
            <polymorphic>TGGGTATTCAAGTCTAGCGGAAATATGTGAGAATCAGACAATTAGTATATTGTTATGACTGTATATTAGAAGAGCTAGATGAAGTTCAGACTTTTGTTTCAGATCAGTTGATGGGGCTATATAACCTGGGGTTTCTGCTGATCCAACAGCTCCTGGCAAGCAGCAAGTATCAAGCTCTAAATGTAAAAAAGAGAATTTTCTACTTTCATCAGTAAAAATGGTGAAAATTTGATTGTCTACATGAAATACGTGTATTTCAACTAACGCTGTAACTTTACAACACTTTGGAAATCCCTTCCATGAAACCTTTCTTCCATACCGATCATTAATTTGAGGAATTTTTGATGGTTACGTAACTCAACAAGGAACCGTTTACTTTGTTAAAACACGGTTGGATGAGTTTCGAAACATGATCATGTCATTTGTTACTCATGGCGGTCTCTATTATTTCCAACGTTCATGCTTAATCAACCGTCCACTATAATGGGATCATGCATTCSTCCTTGGAGCTGATTCCTTTTTTTCTTCCCACCGAAAAATACCTCCCTGCTTGTTTTTTTCATGTTCTTCAAGACACCCAGTATACCTATTTCATTACAAATGGCACAACATACACAAGACACAATGAAGATGGGTGAACTTGCTTCGACGTCTGTCATAATGAGAAATTTCACTTGCACTTATATGACTTTCCAATACACGACCAACCGCCAAGAAAAGAATTTAGAAGAAGTGAGAAGTTGGAGGAGGGGGATGAACAGCGGGCGGCGTCAACGGTAGAAAGGTGTAATATTGTGACGAAGGCGAGGGTGAGGAGAATGTATAAAAGAAGTGGCTGGTGACTGTCAAACCGTCAGTTCTTCAGACATGGAGTTTGAGCAACGCATCAAAGCCTACCGCTTCGTGGCCTATTCGGCTGTCGCTTTCTCGGTTGTTGCCGTTCTTTCGGTATGCATCACTCTTCCAATGGTGCACAACTATGTTCACCATGTCAAGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTCCAACGTTCATGCTTA</pcr_primer_p1>
		<pcr_primer_p2>TGGAAAGTCATATAAGTGCAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATTTCCAACGTTCATGCTTAATCAACCGTCCACTATAATGGGATCATGCATTCCTCCTTGGAGCTGATTCCTTTTTTTCTTCCCACCGAAAAATACCTCCCTGCTTGTTTTTTTCATGTTCTTCAAGACACCCAGTATACCTATTTCATTACAAATGGCACAACATACACAAGACACAATGAAGATGGGTGAACTTGCTTCGACGTCTGTCATAATGAGAAATTTCACTTGCACTTATATGACTTTCCA</canonical_amplicon>
		<polymorphic_amplicon>TATTTCCAACGTTCATGCTTAATCAACCGTCCACTATAATGGGATCATGCATTCSTCCTTGGAGCTGATTCCTTTTTTTCTTCCCACCGAAAAATACCTCCCTGCTTGTTTTTTTCATGTTCTTCAAGACACCCAGTATACCTATTTCATTACAAATGGCACAACATACACAAGACACAATGAAGATGGGTGAACTTGCTTCGACGTCTGTCATAATGAGAAATTTCACTTGCACTTATATGACTTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb70</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>487625</contig_pos>
        <strand>+</strand>
        <context>CCAAGTCTGT[A/G]AAATCAAGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTTTTGTTCATGGTGGTAACAAGAGCAACTGCATTTTTTCCAAGTCTGT</left_flank>
        <right_flank>AAATCAAGGATAACTTCTGGAAATAGGAATATCAGACATACGATTTCGAT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGGATTCAACCATTGAAACAATGTAGAGATGAAGATGTGCCCCATATCTGAAAAAAGAAAAATTGAAAAGAAATTCAGAAGAACCAACTTTTTGGAAACATGAAGCTGAACCAAGAATGTTTGCCACTGCTCTGCCGCAAATTGTGGAGATACACAAAAAATGACTGGCTTCGGAGCATTGATCACCGGTTTTTTGATTGGAACCTCTACAAGTACACCTTCCGCCTCAATCTCCAGCTTTTCCATATTGTCCAGCATATTAGATTGCGCTGTGATAAGAAGATAATCACATCTCTCAAACAGTCGGTGCTCTCTGCAAATTATTTATTCTAAAATGCTTGACATGTTTTCAAAGTTATACGTTGAAACCCATGCTTGATTTTCGAATTTAGCTGTCCTATTAGTTCCAACCAACTTGATTTTGTAGTCAGTGATCTTTCCAACCGTCCTTTTGTTCATGGTGGTAACAAGAGCAACTGCATTTTTTCCAAGTCTGTAAAATCAAGGATAACTTCTGGAAATAGGAATATCAGACATACGATTTCGATGATGGATAGTAATATGCTGAGTGAATGAATGTATGTGTAAACTGTTTTCCATTCAGTCTTACATGCTTTATTCTGAAACTACATAAATTTTGAAATTACTACCGTAACCTTCACTCACACTTCCGGGGATGCATCCCGTACAACTGAATAGAATAGAATGAATACAGAAAGAGCAAACAGTAAGACCAATAGAACTTTGAATGAAAAACGAGGAAATCGGGGAACCATCGTGTCCTTCTTGTGTTCCAATAAAAAAGACGGTGGAAAGGAAGAAGAAGACATCCCCCGAAAAATATGGAAAAGGAAAAATAAAAAGATCCTCATCAAGATTGAAAATTTTTCAAGCTTCCAAGATATAGATCTACGGTGGAAACTGGATGGATAGACGGAACATTTAGGTGCGAATCCACTTTTTGGAGAGACGAAAGAAACAAATTTTACATTCAATCT</canonical>
            <polymorphic>ATAGGATTCAACCATTGAAACAATGTAGAGATGAAGATGTGCCCCATATCTGAAAAAAGAAAAATTGAAAAGAAATTCAGAAGAACCAACTTTTTGGAAACATGAAGCTGAACCAAGAATGTTTGCCACTGCTCTGCCGCAAATTGTGGAGATACACAAAAAATGACTGGCTTCGGAGCATTGATCACCGGTTTTTTGATTGGAACCTCTACAAGTACACCTTCCGCCTCAATCTCCAGCTTTTCCATATTGTCCAGCATATTAGATTGCGCTGTGATAAGAAGATAATCACATCTCTCAAACAGTCGGTGCTCTCTGCAAATTATTTATTCTAAAATGCTTGACATGTTTTCAAAGTTATACGTTGAAACCCATGCTTGATTTTCGAATTTAGCTGTCCTATTAGTTCCAACCAACTTGATTTTGTAGTCAGTGATCTTTCCAACCGTCCTTTTGTTCATGGTGGTAACAAGAGCAACTGCATTTTTTCCAAGTCTGTRAAATCAAGGATAACTTCTGGAAATAGGAATATCAGACATACGATTTCGATGATGGATAGTAATATGCTGAGTGAATGAATGTATGTGTAAACTGTTTTCCATTCAGTCTTACATGCTTTATTCTGAAACTACATAAATTTTGAAATTACTACCGTAACCTTCACTCACACTTCCGGGGATGCATCCCGTACAACTGAATAGAATAGAATGAATACAGAAAGAGCAAACAGTAAGACCAATAGAACTTTGAATGAAAAACGAGGAAATCGGGGAACCATCGTGTCCTTCTTGTGTTCCAATAAAAAAGACGGTGGAAAGGAAGAAGAAGACATCCCCCGAAAAATATGGAAAAGGAAAAATAAAAAGATCCTCATCAAGATTGAAAATTTTTCAAGCTTCCAAGATATAGATCTACGGTGGAAACTGGATGGATAGACGGAACATTTAGGTGCGAATCCACTTTTTGGAGAGACGAAAGAAACAAATTTTACATTCAATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTGACATGTTTTCAAAGTTAT</pcr_primer_p1>
		<pcr_primer_p2>CATACATTCATTCACTCAGCATA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GCTTGACATGTTTTCAAAGTTATACGTTGAAACCCATGCTTGATTTTCGAATTTAGCTGTCCTATTAGTTCCAACCAACTTGATTTTGTAGTCAGTGATCTTTCCAACCGTCCTTTTGTTCATGGTGGTAACAAGAGCAACTGCATTTTTTCCAAGTCTGTAAAATCAAGGATAACTTCTGGAAATAGGAATATCAGACATACGATTTCGATGATGGATAGTAATATGCTGAGTGAATGAATGTATG</canonical_amplicon>
		<polymorphic_amplicon>GCTTGACATGTTTTCAAAGTTATACGTTGAAACCCATGCTTGATTTTCGAATTTAGCTGTCCTATTAGTTCCAACCAACTTGATTTTGTAGTCAGTGATCTTTCCAACCGTCCTTTTGTTCATGGTGGTAACAAGAGCAACTGCATTTTTTCCAAGTCTGTRAAATCAAGGATAACTTCTGGAAATAGGAATATCAGACATACGATTTCGATGATGGATAGTAATATGCTGAGTGAATGAATGTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb71</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>487542</contig_pos>
        <strand>+</strand>
        <context>TTCCAACCAA[C/G]TTGATTTTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAAACCCATGCTTGATTTTCGAATTTAGCTGTCCTATTAGTTCCAACCAA</left_flank>
        <right_flank>TTGATTTTGTAGTCAGTGATCTTTCCAACCGTCCTTTTGTTCATGGTGGT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATCGGTTACTGGGAATTTGATAGTGAGCCATGGTTCTATAGAAACTAATCCCATTTTTTGGTACTCTCGGATCAAATTGAAATAGGATTCAACCATTGAAACAATGTAGAGATGAAGATGTGCCCCATATCTGAAAAAAGAAAAATTGAAAAGAAATTCAGAAGAACCAACTTTTTGGAAACATGAAGCTGAACCAAGAATGTTTGCCACTGCTCTGCCGCAAATTGTGGAGATACACAAAAAATGACTGGCTTCGGAGCATTGATCACCGGTTTTTTGATTGGAACCTCTACAAGTACACCTTCCGCCTCAATCTCCAGCTTTTCCATATTGTCCAGCATATTAGATTGCGCTGTGATAAGAAGATAATCACATCTCTCAAACAGTCGGTGCTCTCTGCAAATTATTTATTCTAAAATGCTTGACATGTTTTCAAAGTTATACGTTGAAACCCATGCTTGATTTTCGAATTTAGCTGTCCTATTAGTTCCAACCAACTTGATTTTGTAGTCAGTGATCTTTCCAACCGTCCTTTTGTTCATGGTGGTAACAAGAGCAACTGCATTTTTTCCAAGTCTGTAAAATCAAGGATAACTTCTGGAAATAGGAATATCAGACATACGATTTCGATGATGGATAGTAATATGCTGAGTGAATGAATGTATGTGTAAACTGTTTTCCATTCAGTCTTACATGCTTTATTCTGAAACTACATAAATTTTGAAATTACTACCGTAACCTTCACTCACACTTCCGGGGATGCATCCCGTACAACTGAATAGAATAGAATGAATACAGAAAGAGCAAACAGTAAGACCAATAGAACTTTGAATGAAAAACGAGGAAATCGGGGAACCATCGTGTCCTTCTTGTGTTCCAATAAAAAAGACGGTGGAAAGGAAGAAGAAGACATCCCCCGAAAAATATGGAAAAGGAAAAATAAAAAGATCCTCATCAAGATTGAAAATTTTTCAAGCTTCCAAGATATAGATCTACGG</canonical>
            <polymorphic>CCATCGGTTACTGGGAATTTGATAGTGAGCCATGGTTCTATAGAAACTAATCCCATTTTTTGGTACTCTCGGATCAAATTGAAATAGGATTCAACCATTGAAACAATGTAGAGATGAAGATGTGCCCCATATCTGAAAAAAGAAAAATTGAAAAGAAATTCAGAAGAACCAACTTTTTGGAAACATGAAGCTGAACCAAGAATGTTTGCCACTGCTCTGCCGCAAATTGTGGAGATACACAAAAAATGACTGGCTTCGGAGCATTGATCACCGGTTTTTTGATTGGAACCTCTACAAGTACACCTTCCGCCTCAATCTCCAGCTTTTCCATATTGTCCAGCATATTAGATTGCGCTGTGATAAGAAGATAATCACATCTCTCAAACAGTCGGTGCTCTCTGCAAATTATTTATTCTAAAATGCTTGACATGTTTTCAAAGTTATACGTTGAAACCCATGCTTGATTTTCGAATTTAGCTGTCCTATTAGTTCCAACCAASTTGATTTTGTAGTCAGTGATCTTTCCAACCGTCCTTTTGTTCATGGTGGTAACAAGAGCAACTGCATTTTTTCCAAGTCTGTAAAATCAAGGATAACTTCTGGAAATAGGAATATCAGACATACGATTTCGATGATGGATAGTAATATGCTGAGTGAATGAATGTATGTGTAAACTGTTTTCCATTCAGTCTTACATGCTTTATTCTGAAACTACATAAATTTTGAAATTACTACCGTAACCTTCACTCACACTTCCGGGGATGCATCCCGTACAACTGAATAGAATAGAATGAATACAGAAAGAGCAAACAGTAAGACCAATAGAACTTTGAATGAAAAACGAGGAAATCGGGGAACCATCGTGTCCTTCTTGTGTTCCAATAAAAAAGACGGTGGAAAGGAAGAAGAAGACATCCCCCGAAAAATATGGAAAAGGAAAAATAAAAAGATCCTCATCAAGATTGAAAATTTTTCAAGCTTCCAAGATATAGATCTACGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTGACATGTTTTCAAAGTTAT</pcr_primer_p1>
		<pcr_primer_p2>CATACATTCATTCACTCAGCATA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GCTTGACATGTTTTCAAAGTTATACGTTGAAACCCATGCTTGATTTTCGAATTTAGCTGTCCTATTAGTTCCAACCAACTTGATTTTGTAGTCAGTGATCTTTCCAACCGTCCTTTTGTTCATGGTGGTAACAAGAGCAACTGCATTTTTTCCAAGTCTGTAAAATCAAGGATAACTTCTGGAAATAGGAATATCAGACATACGATTTCGATGATGGATAGTAATATGCTGAGTGAATGAATGTATG</canonical_amplicon>
		<polymorphic_amplicon>GCTTGACATGTTTTCAAAGTTATACGTTGAAACCCATGCTTGATTTTCGAATTTAGCTGTCCTATTAGTTCCAACCAASTTGATTTTGTAGTCAGTGATCTTTCCAACCGTCCTTTTGTTCATGGTGGTAACAAGAGCAACTGCATTTTTTCCAAGTCTGTAAAATCAAGGATAACTTCTGGAAATAGGAATATCAGACATACGATTTCGATGATGGATAGTAATATGCTGAGTGAATGAATGTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb107</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>522350</contig_pos>
        <strand></strand>
        <context>GATTTTCATT[A/G]GTGTCTCCCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTCTTCAGATTTTTTTTGTGAAAGTATTTATATTGCTTTGATTTTCATT</left_flank>
        <right_flank>GTGTCTCCCGCGGACGGACGCTCATTGATCATTCCATTCACAGGTTCATC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAACTTTGAGCCAATTTTTTTAGGTTCCTGTCAAAAATATAAAAAAGTTGTCAACTGATAAATTGTTCATCATACAATCAGAAATGTTTTATCAGTTGTCATATTTTTAATAGCTTGTATAAAAAACTGAGATAATTGAGCTCAAACATGACAGCGGGGGGAGGGGGGGCTTGTATTACAGGTTTTACATAAAATTTTAGGAGACATAGTTAGGCTATGAAGGGCAAAATAACAGTTGAGAACGGCTACTGAAGTGTGGAGAACTATACATTTTATGAAATTATAAGTTATCCTTCTTAAAAAAAAGAGAAGGTTTCCTAAGGAGATTTCATCCCAGAAAAAATTCATCTCATCCAAATCCTTGAGGCGCAAATAATCCTGCAACAAACTTCACTTCCTCTCTCTATCTGTTTCCTTTTCTTTCTCTATCGTCCAGATATCCGCTCACTTCTTCAGATTTTTTTTGTGAAAGTATTTATATTGCTTTGATTTTCATTAGTGTCTCCCGCGGACGGACGCTCATTGATCATTCCATTCACAGGTTCATCGATTCCAAATAACTCTCTTTTCTTCTTCTATTTATTTCTTTCATGAAATGTGATGGGATGGGAATGTGCTCTTTCAACCTTCCAGCTACGTCAGTTGTCATGTCTCCTGTTACAATCTGCCTATCATTCGATAGAGCGCTTTCACTCTCTCAAATTTTCTTGTCGGACTCTTTTCGACTTTTCCGTTTTCTTTCTTTTTTCTTCTTTTTATCCGTTTCTGAGCCTTCTTTAAAAACACAAAAATTATCTGAGCAAAGTTTGCGTCGTCATGTCTTTTAATCTAATCCTCGCCAAATTTGATTTTTTGATTTTCACTCCGTCAGTACCAAAAGTATAACTGTCTCATGAAAATTTGAGCCAATTTTGAGTCCTGTCCATCAGACTCCGCCCTTTTTTCTCTTCTTTTTCAGTGAACTACCATTCAAATGTTTTCTCAATGTTACTCTTTTT</canonical>
            <polymorphic>TTTAACTTTGAGCCAATTTTTTTAGGTTCCTGTCAAAAATATAAAAAAGTTGTCAACTGATAAATTGTTCATCATACAATCAGAAATGTTTTATCAGTTGTCATATTTTTAATAGCTTGTATAAAAAACTGAGATAATTGAGCTCAAACATGACAGCGGGGGGAGGGGGGGCTTGTATTACAGGTTTTACATAAAATTTTAGGAGACATAGTTAGGCTATGAAGGGCAAAATAACAGTTGAGAACGGCTACTGAAGTGTGGAGAACTATACATTTTATGAAATTATAAGTTATCCTTCTTAAAAAAAAGAGAAGGTTTCCTAAGGAGATTTCATCCCAGAAAAAATTCATCTCATCCAAATCCTTGAGGCGCAAATAATCCTGCAACAAACTTCACTTCCTCTCTCTATCTGTTTCCTTTTCTTTCTCTATCGTCCAGATATCCGCTCACTTCTTCAGATTTTTTTTGTGAAAGTATTTATATTGCTTTGATTTTCATTRGTGTCTCCCGCGGACGGACGCTCATTGATCATTCCATTCACAGGTTCATCGATTCCAAATAACTCTCTTTTCTTCTTCTATTTATTTCTTTCATGAAATGTGATGGGATGGGAATGTGCTCTTTCAACCTTCCAGCTACGTCAGTTGTCATGTCTCCTGTTACAATCTGCCTATCATTCGATAGAGCGCTTTCACTCTCTCAAATTTTCTTGTCGGACTCTTTTCGACTTTTCCGTTTTCTTTCTTTTTTCTTCTTTTTATCCGTTTCTGAGCCTTCTTTAAAAACACAAAAATTATCTGAGCAAAGTTTGCGTCGTCATGTCTTTTAATCTAATCCTCGCCAAATTTGATTTTTTGATTTTCACTCCGTCAGTACCAAAAGTATAACTGTCTCATGAAAATTTGAGCCAATTTTGAGTCCTGTCCATCAGACTCCGCCCTTTTTTCTCTTCTTTTTCAGTGAACTACCATTCAAATGTTTTCTCAATGTTACTCTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTTCTCTATCGTCCAGAT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTAACAGGAGACATGACAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTTCTCTATCGTCCAGATATCCGCTCACTTCTTCAGATTTTTTTTGTGAAAGTATTTATATTGCTTTGATTTTCATTAGTGTCTCCCGCGGACGGACGCTCATTGATCATTCCATTCACAGGTTCATCGATTCCAAATAACTCTCTTTTCTTCTTCTATTTATTTCTTTCATGAAATGTGATGGGATGGGAATGTGCTCTTTCAACCTTCCAGCTACGTCAGTTGTCATGTCTCCTGTTACAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTTCTCTATCGTCCAGATATCCGCTCACTTCTTCAGATTTTTTTTGTGAAAGTATTTATATTGCTTTGATTTTCATTRGTGTCTCCCGCGGACGGACGCTCATTGATCATTCCATTCACAGGTTCATCGATTCCAAATAACTCTCTTTTCTTCTTCTATTTATTTCTTTCATGAAATGTGATGGGATGGGAATGTGCTCTTTCAACCTTCCAGCTACGTCAGTTGTCATGTCTCCTGTTACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb108</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>522451</contig_pos>
        <strand>+</strand>
        <context>TCATGAAATG[G/T]GATGGGATGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATTCCAAATAACTCTCTTTTCTTCTTCTATTTATTTCTTTCATGAAATG</left_flank>
        <right_flank>GATGGGATGGGAATGTGCTCTTTCAACCTTCCAGCTACGTCAGTTGTCAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATATTTTTAATAGCTTGTATAAAAAACTGAGATAATTGAGCTCAAACATGACAGCGGGGGGAGGGGGGGCTTGTATTACAGGTTTTACATAAAATTTTAGGAGACATAGTTAGGCTATGAAGGGCAAAATAACAGTTGAGAACGGCTACTGAAGTGTGGAGAACTATACATTTTATGAAATTATAAGTTATCCTTCTTAAAAAAAAGAGAAGGTTTCCTAAGGAGATTTCATCCCAGAAAAAATTCATCTCATCCAAATCCTTGAGGCGCAAATAATCCTGCAACAAACTTCACTTCCTCTCTCTATCTGTTTCCTTTTCTTTCTCTATCGTCCAGATATCCGCTCACTTCTTCAGATTTTTTTTGTGAAAGTATTTATATTGCTTTGATTTTCATTAGTGTCTCCCGCGGACGGACGCTCATTGATCATTCCATTCACAGGTTCATCGATTCCAAATAACTCTCTTTTCTTCTTCTATTTATTTCTTTCATGAAATGTGATGGGATGGGAATGTGCTCTTTCAACCTTCCAGCTACGTCAGTTGTCATGTCTCCTGTTACAATCTGCCTATCATTCGATAGAGCGCTTTCACTCTCTCAAATTTTCTTGTCGGACTCTTTTCGACTTTTCCGTTTTCTTTCTTTTTTCTTCTTTTTATCCGTTTCTGAGCCTTCTTTAAAAACACAAAAATTATCTGAGCAAAGTTTGCGTCGTCATGTCTTTTAATCTAATCCTCGCCAAATTTGATTTTTTGATTTTCACTCCGTCAGTACCAAAAGTATAACTGTCTCATGAAAATTTGAGCCAATTTTGAGTCCTGTCCATCAGACTCCGCCCTTTTTTCTCTTCTTTTTCAGTGAACTACCATTCAAATGTTTTCTCAATGTTACTCTTTTTTCTTATTCTCCCAAAAAAGATTTCTGATCAAAAACCACCACCACTAAATGCTCAATTTTTCTTTTCGTGTTGCTTCGAGGTTTTTTCTTTTTTTCATCCTT</canonical>
            <polymorphic>CATATTTTTAATAGCTTGTATAAAAAACTGAGATAATTGAGCTCAAACATGACAGCGGGGGGAGGGGGGGCTTGTATTACAGGTTTTACATAAAATTTTAGGAGACATAGTTAGGCTATGAAGGGCAAAATAACAGTTGAGAACGGCTACTGAAGTGTGGAGAACTATACATTTTATGAAATTATAAGTTATCCTTCTTAAAAAAAAGAGAAGGTTTCCTAAGGAGATTTCATCCCAGAAAAAATTCATCTCATCCAAATCCTTGAGGCGCAAATAATCCTGCAACAAACTTCACTTCCTCTCTCTATCTGTTTCCTTTTCTTTCTCTATCGTCCAGATATCCGCTCACTTCTTCAGATTTTTTTTGTGAAAGTATTTATATTGCTTTGATTTTCATTAGTGTCTCCCGCGGACGGACGCTCATTGATCATTCCATTCACAGGTTCATCGATTCCAAATAACTCTCTTTTCTTCTTCTATTTATTTCTTTCATGAAATGKGATGGGATGGGAATGTGCTCTTTCAACCTTCCAGCTACGTCAGTTGTCATGTCTCCTGTTACAATCTGCCTATCATTCGATAGAGCGCTTTCACTCTCTCAAATTTTCTTGTCGGACTCTTTTCGACTTTTCCGTTTTCTTTCTTTTTTCTTCTTTTTATCCGTTTCTGAGCCTTCTTTAAAAACACAAAAATTATCTGAGCAAAGTTTGCGTCGTCATGTCTTTTAATCTAATCCTCGCCAAATTTGATTTTTTGATTTTCACTCCGTCAGTACCAAAAGTATAACTGTCTCATGAAAATTTGAGCCAATTTTGAGTCCTGTCCATCAGACTCCGCCCTTTTTTCTCTTCTTTTTCAGTGAACTACCATTCAAATGTTTTCTCAATGTTACTCTTTTTTCTTATTCTCCCAAAAAAGATTTCTGATCAAAAACCACCACCACTAAATGCTCAATTTTTCTTTTCGTGTTGCTTCGAGGTTTTTTCTTTTTTTCATCCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>157 135 98 93 77 76 75 62 54 37 33 32 26 21 16 3 3 2</canonical_bands>
                <polymorphic_bands>157 135 98 93 78 77 76 75 54 37 33 32 26 21 3 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTTCTCTATCGTCCAGAT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTAACAGGAGACATGACAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTTCTCTATCGTCCAGATATCCGCTCACTTCTTCAGATTTTTTTTGTGAAAGTATTTATATTGCTTTGATTTTCATTAGTGTCTCCCGCGGACGGACGCTCATTGATCATTCCATTCACAGGTTCATCGATTCCAAATAACTCTCTTTTCTTCTTCTATTTATTTCTTTCATGAAATGTGATGGGATGGGAATGTGCTCTTTCAACCTTCCAGCTACGTCAGTTGTCATGTCTCCTGTTACAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTTCTCTATCGTCCAGATATCCGCTCACTTCTTCAGATTTTTTTTGTGAAAGTATTTATATTGCTTTGATTTTCATTAGTGTCTCCCGCGGACGGACGCTCATTGATCATTCCATTCACAGGTTCATCGATTCCAAATAACTCTCTTTTCTTCTTCTATTTATTTCTTTCATGAAATGKGATGGGATGGGAATGTGCTCTTTCAACCTTCCAGCTACGTCAGTTGTCATGTCTCCTGTTACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb109</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>524595</contig_pos>
        <strand>+</strand>
        <context>CTCACTTGCT[A/C]GTTATTCATA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCTCCTCTTTTTCTGCCCCCGGCTTCTATAATTTTTTTGCTCACTTGCT</left_flank>
        <right_flank>GTTATTCATAGTCTTTTATCCGAAACCAGTTCCTGGAATCACCTTAGGTC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCTATTTTGGTACCAAGAATCAAGACGTTTTATTCCTGTGACTAAGCTATCCATCTCGAGCGGACCGTCCGAAAACACTCGCCTTATTCTTCCTGCCCGCAATATCACGGTGATTGCACGCGCAACGTACTTTTCGTCGCAAAAATTTAAAACGGGTGATTCAACCGACCAGGCGACGGGAGGGTGAAATTTTCCGGAACTCCAAAGCTTACTTGAGACGGGAGAGAACTAAATTCTCACGATTTTTTTCAGGGTAGACTTTTAAAAGTTATTTTCGATGACATAATTTCGAAATAACCCCGTAGAATGAGCCAGACTTTATAACAGGAATTCAAAAACAAAAAGGTTTTCGGAATTTCAGTTTGTAAAACCATTGTCAAAATTTTCAAAAAATCCTTGAATTGATATTTTGGACAAGATAAGCCGTTTCTTGTTTTGGTCCAATTTTCCTCCTCTTTTTCTGCCCCCGGCTTCTATAATTTTTTTGCTCACTTGCTCGTTATTCATAGTCTTTTATCCGAAACCAGTTCCTGGAATCACCTTAGGTCGGAGATCAGAGCACGGATTCCATTCCATCCTTCCTTCTTTTTTCTATTCTAATAGTTGTTTGTTTTTTTCCCATCGAGAGTGAACGTGTGGGGTCCCAATTGAAATTCACAAAAGTTTTTGTCTTATCTCTGTTCTCCCACAGAGTTCTTTTTCTTTTTATTGTCACATACTTGTTTACAACCACACTCGACACGACGACTTACACCTTTTATAAATATGTACATTGAATCAAACCAACCAAAAAACGCAACGAAGAATGAATGAATTTATGATTTTTTTTTCGGTTGTCTCGTAGAGCACCTAGAGTTGAGTAATGTATGTGTTTTTCTTCTAATCTGTTTGAGGACCGTCGTCTGAAAATATCCCCTTTTTTGGGTTTCACACTGACTTGCGAGGGTGTGGGAAGATAGAATAAAAGAATATTTTTTGTGTGGTTTTGGAATGCCAAC</canonical>
            <polymorphic>CATCTATTTTGGTACCAAGAATCAAGACGTTTTATTCCTGTGACTAAGCTATCCATCTCGAGCGGACCGTCCGAAAACACTCGCCTTATTCTTCCTGCCCGCAATATCACGGTGATTGCACGCGCAACGTACTTTTCGTCGCAAAAATTTAAAACGGGTGATTCAACCGACCAGGCGACGGGAGGGTGAAATTTTCCGGAACTCCAAAGCTTACTTGAGACGGGAGAGAACTAAATTCTCACGATTTTTTTCAGGGTAGACTTTTAAAAGTTATTTTCGATGACATAATTTCGAAATAACCCCGTAGAATGAGCCAGACTTTATAACAGGAATTCAAAAACAAAAAGGTTTTCGGAATTTCAGTTTGTAAAACCATTGTCAAAATTTTCAAAAAATCCTTGAATTGATATTTTGGACAAGATAAGCCGTTTCTTGTTTTGGTCCAATTTTCCTCCTCTTTTTCTGCCCCCGGCTTCTATAATTTTTTTGCTCACTTGCTMGTTATTCATAGTCTTTTATCCGAAACCAGTTCCTGGAATCACCTTAGGTCGGAGATCAGAGCACGGATTCCATTCCATCCTTCCTTCTTTTTTCTATTCTAATAGTTGTTTGTTTTTTTCCCATCGAGAGTGAACGTGTGGGGTCCCAATTGAAATTCACAAAAGTTTTTGTCTTATCTCTGTTCTCCCACAGAGTTCTTTTTCTTTTTATTGTCACATACTTGTTTACAACCACACTCGACACGACGACTTACACCTTTTATAAATATGTACATTGAATCAAACCAACCAAAAAACGCAACGAAGAATGAATGAATTTATGATTTTTTTTTCGGTTGTCTCGTAGAGCACCTAGAGTTGAGTAATGTATGTGTTTTTCTTCTAATCTGTTTGAGGACCGTCGTCTGAAAATATCCCCTTTTTTGGGTTTCACACTGACTTGCGAGGGTGTGGGAAGATAGAATAAAAGAATATTTTTTGTGTGGTTTTGGAATGCCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAATTTTCCTCCTCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGTGGGAGAACAGAGATAAGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAATTTTCCTCCTCTTTTTCTGCCCCCGGCTTCTATAATTTTTTTGCTCACTTGCTCGTTATTCATAGTCTTTTATCCGAAACCAGTTCCTGGAATCACCTTAGGTCGGAGATCAGAGCACGGATTCCATTCCATCCTTCCTTCTTTTTTCTATTCTAATAGTTGTTTGTTTTTTTCCCATCGAGAGTGAACGTGTGGGGTCCCAATTGAAATTCACAAAAGTTTTTGTCTTATCTCTGTTCTCCCACA</canonical_amplicon>
		<polymorphic_amplicon>CCAATTTTCCTCCTCTTTTTCTGCCCCCGGCTTCTATAATTTTTTTGCTCACTTGCTMGTTATTCATAGTCTTTTATCCGAAACCAGTTCCTGGAATCACCTTAGGTCGGAGATCAGAGCACGGATTCCATTCCATCCTTCCTTCTTTTTTCTATTCTAATAGTTGTTTGTTTTTTTCCCATCGAGAGTGAACGTGTGGGGTCCCAATTGAAATTCACAAAAGTTTTTGTCTTATCTCTGTTCTCCCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb110</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>528605</contig_pos>
        <strand>+</strand>
        <context>CTCCTTATTC[A/T]GATGAGAGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCACGAAATTCAAATCTCGGTCAAACCGCCTCCGAAACTCCTCCTTATTC</left_flank>
        <right_flank>GATGAGAGATATAGAAGTTTGCAGAAAAAAAGCAACGTTGTTTCTATCTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCGTCACTCATACACCCCAACGCTGCCTATCAGAAGAACGAGAAGTTGCTCCTCATTTTTCTCTATTTTTCTTATTCATTCAAAAATCTTCCGCCTTTTTTCTCCTCTAATTAGTTCGATGTGGCAAAAAACCTGAGAATGAGAAGGCGATGCGACGACATTAGGAAATAAAAACATTACATATTTTTTCACAATCTGACGATTCTAATTTGAAGAAAAAACATTTCTTTGAATATGAGCGGATAGGCATCTTTCGAAAAAAAAAAGGAGGAGCTCTCAACTCAAATTTGGTCAATTTCGCGGCTTCGTCTTCTCTTAACTCGCCTTTTCTTAACTTACGTCTCTCCTTTTTTCTGAAAAACTCCACACACATTTCTTCATTTTCTATGAAGTATGACCAATACCTAGGGAAAAGTTCATTCCAATTTCCGCCTGATTCGTCAAATTCACGAAATTCAAATCTCGGTCAAACCGCCTCCGAAACTCCTCCTTATTCAGATGAGAGATATAGAAGTTTGCAGAAAAAAAGCAACGTTGTTTCTATCTCTTTTTCATTCTCTCTGCTCCACTCCCGAATTCTCCCTCCCGATTTTTTAATATTCAAAATCTAGTGTATATACATATGAAGGAAATTTCTTCTGCAATCCGTCCATCTTCGGACGACCGGAGCATCCGGGGCGGATCCAAGAGAGGTATCCTCATTGCAATAACACTGCATCGCCTTCCTCTTCTTTTTCTCTCCTCGAATTGAATGAATTCAATTGGACGGACGACTGAATTTATAAAGAAAATATGAATATATGGGGGGGAGCTTTTAATGATGCTTCAGTTTGATCTAGACATCCACGTAGGTGTTTGTTTTTTCCGGAAAACCTTATCTAGTTTAACTAAAACGTTTTCAAATGCTCTCATCATAATAAGGATAAGTTTAGAAAAACAATAAACTCGAAGGCCTTATTTTTCAAACTCTTTGCCTCTTTTCACCTCAAAACACACA</canonical>
            <polymorphic>TCTTCGTCACTCATACACCCCAACGCTGCCTATCAGAAGAACGAGAAGTTGCTCCTCATTTTTCTCTATTTTTCTTATTCATTCAAAAATCTTCCGCCTTTTTTCTCCTCTAATTAGTTCGATGTGGCAAAAAACCTGAGAATGAGAAGGCGATGCGACGACATTAGGAAATAAAAACATTACATATTTTTTCACAATCTGACGATTCTAATTTGAAGAAAAAACATTTCTTTGAATATGAGCGGATAGGCATCTTTCGAAAAAAAAAAGGAGGAGCTCTCAACTCAAATTTGGTCAATTTCGCGGCTTCGTCTTCTCTTAACTCGCCTTTTCTTAACTTACGTCTCTCCTTTTTTCTGAAAAACTCCACACACATTTCTTCATTTTCTATGAAGTATGACCAATACCTAGGGAAAAGTTCATTCCAATTTCCGCCTGATTCGTCAAATTCACGAAATTCAAATCTCGGTCAAACCGCCTCCGAAACTCCTCCTTATTCWGATGAGAGATATAGAAGTTTGCAGAAAAAAAGCAACGTTGTTTCTATCTCTTTTTCATTCTCTCTGCTCCACTCCCGAATTCTCCCTCCCGATTTTTTAATATTCAAAATCTAGTGTATATACATATGAAGGAAATTTCTTCTGCAATCCGTCCATCTTCGGACGACCGGAGCATCCGGGGCGGATCCAAGAGAGGTATCCTCATTGCAATAACACTGCATCGCCTTCCTCTTCTTTTTCTCTCCTCGAATTGAATGAATTCAATTGGACGGACGACTGAATTTATAAAGAAAATATGAATATATGGGGGGGAGCTTTTAATGATGCTTCAGTTTGATCTAGACATCCACGTAGGTGTTTGTTTTTTCCGGAAAACCTTATCTAGTTTAACTAAAACGTTTTCAAATGCTCTCATCATAATAAGGATAAGTTTAGAAAAACAATAAACTCGAAGGCCTTATTTTTCAAACTCTTTGCCTCTTTTCACCTCAAAACACACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTAACTCGCCTTTTCTTAACTT</pcr_primer_p1>
		<pcr_primer_p2>GCAGAGAGAATGAAAAAGAGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTAACTCGCCTTTTCTTAACTTACGTCTCTCCTTTTTTCTGAAAAACTCCACACACATTTCTTCATTTTCTATGAAGTATGACCAATACCTAGGGAAAAGTTCATTCCAATTTCCGCCTGATTCGTCAAATTCACGAAATTCAAATCTCGGTCAAACCGCCTCCGAAACTCCTCCTTATTCAGATGAGAGATATAGAAGTTTGCAGAAAAAAAGCAACGTTGTTTCTATCTCTTTTTCATTCTCTCTGC</canonical_amplicon>
		<polymorphic_amplicon>CTTAACTCGCCTTTTCTTAACTTACGTCTCTCCTTTTTTCTGAAAAACTCCACACACATTTCTTCATTTTCTATGAAGTATGACCAATACCTAGGGAAAAGTTCATTCCAATTTCCGCCTGATTCGTCAAATTCACGAAATTCAAATCTCGGTCAAACCGCCTCCGAAACTCCTCCTTATTCWGATGAGAGATATAGAAGTTTGCAGAAAAAAAGCAACGTTGTTTCTATCTCTTTTTCATTCTCTCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb111</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>528678</contig_pos>
        <strand>+</strand>
        <context>TCTGCTCCAC[C/T]CCCGAATTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAAAAAAGCAACGTTGTTTCTATCTCTTTTTCATTCTCTCTGCTCCAC</left_flank>
        <right_flank>CCCGAATTCTCCCTCCCGATTTTTTAATATTCAAAATCTAGTGTATATAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTATTCATTCAAAAATCTTCCGCCTTTTTTCTCCTCTAATTAGTTCGATGTGGCAAAAAACCTGAGAATGAGAAGGCGATGCGACGACATTAGGAAATAAAAACATTACATATTTTTTCACAATCTGACGATTCTAATTTGAAGAAAAAACATTTCTTTGAATATGAGCGGATAGGCATCTTTCGAAAAAAAAAAGGAGGAGCTCTCAACTCAAATTTGGTCAATTTCGCGGCTTCGTCTTCTCTTAACTCGCCTTTTCTTAACTTACGTCTCTCCTTTTTTCTGAAAAACTCCACACACATTTCTTCATTTTCTATGAAGTATGACCAATACCTAGGGAAAAGTTCATTCCAATTTCCGCCTGATTCGTCAAATTCACGAAATTCAAATCTCGGTCAAACCGCCTCCGAAACTCCTCCTTATTCAGATGAGAGATATAGAAGTTTGCAGAAAAAAAGCAACGTTGTTTCTATCTCTTTTTCATTCTCTCTGCTCCACTCCCGAATTCTCCCTCCCGATTTTTTAATATTCAAAATCTAGTGTATATACATATGAAGGAAATTTCTTCTGCAATCCGTCCATCTTCGGACGACCGGAGCATCCGGGGCGGATCCAAGAGAGGTATCCTCATTGCAATAACACTGCATCGCCTTCCTCTTCTTTTTCTCTCCTCGAATTGAATGAATTCAATTGGACGGACGACTGAATTTATAAAGAAAATATGAATATATGGGGGGGAGCTTTTAATGATGCTTCAGTTTGATCTAGACATCCACGTAGGTGTTTGTTTTTTCCGGAAAACCTTATCTAGTTTAACTAAAACGTTTTCAAATGCTCTCATCATAATAAGGATAAGTTTAGAAAAACAATAAACTCGAAGGCCTTATTTTTCAAACTCTTTGCCTCTTTTCACCTCAAAACACACACATTTGCAATNNNNNNNNNNNTCCAAGAGAGGTATCCTCATTGCAATAACACTGCATCGCCTTCCTCTTCTTT</canonical>
            <polymorphic>CTTATTCATTCAAAAATCTTCCGCCTTTTTTCTCCTCTAATTAGTTCGATGTGGCAAAAAACCTGAGAATGAGAAGGCGATGCGACGACATTAGGAAATAAAAACATTACATATTTTTTCACAATCTGACGATTCTAATTTGAAGAAAAAACATTTCTTTGAATATGAGCGGATAGGCATCTTTCGAAAAAAAAAAGGAGGAGCTCTCAACTCAAATTTGGTCAATTTCGCGGCTTCGTCTTCTCTTAACTCGCCTTTTCTTAACTTACGTCTCTCCTTTTTTCTGAAAAACTCCACACACATTTCTTCATTTTCTATGAAGTATGACCAATACCTAGGGAAAAGTTCATTCCAATTTCCGCCTGATTCGTCAAATTCACGAAATTCAAATCTCGGTCAAACCGCCTCCGAAACTCCTCCTTATTCAGATGAGAGATATAGAAGTTTGCAGAAAAAAAGCAACGTTGTTTCTATCTCTTTTTCATTCTCTCTGCTCCACYCCCGAATTCTCCCTCCCGATTTTTTAATATTCAAAATCTAGTGTATATACATATGAAGGAAATTTCTTCTGCAATCCGTCCATCTTCGGACGACCGGAGCATCCGGGGCGGATCCAAGAGAGGTATCCTCATTGCAATAACACTGCATCGCCTTCCTCTTCTTTTTCTCTCCTCGAATTGAATGAATTCAATTGGACGGACGACTGAATTTATAAAGAAAATATGAATATATGGGGGGGAGCTTTTAATGATGCTTCAGTTTGATCTAGACATCCACGTAGGTGTTTGTTTTTTCCGGAAAACCTTATCTAGTTTAACTAAAACGTTTTCAAATGCTCTCATCATAATAAGGATAAGTTTAGAAAAACAATAAACTCGAAGGCCTTATTTTTCAAACTCTTTGCCTCTTTTCACCTCAAAACACACACATTTGCAATNNNNNNNNNNNTCCAAGAGAGGTATCCTCATTGCAATAACACTGCATCGCCTTCCTCTTCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>378 251 205 123 29 14</canonical_bands>
                <polymorphic_bands>378 251 205 137 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGATATAGAAGTTTGCAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATTCGAGGAGAGAAAAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGAGATATAGAAGTTTGCAGAAAAAAAGCAACGTTGTTTCTATCTCTTTTTCATTCTCTCTGCTCCACTCCCGAATTCTCCCTCCCGATTTTTTAATATTCAAAATCTAGTGTATATACATATGAAGGAAATTTCTTCTGCAATCCGTCCATCTTCGGACGACCGGAGCATCCGGGGCGGATCCAAGAGAGGTATCCTCATTGCAATAACACTGCATCGCCTTCCTCTTCTTTTTCTCTCCTCGAATT</canonical_amplicon>
		<polymorphic_amplicon>AGAGATATAGAAGTTTGCAGAAAAAAAGCAACGTTGTTTCTATCTCTTTTTCATTCTCTCTGCTCCACYCCCGAATTCTCCCTCCCGATTTTTTAATATTCAAAATCTAGTGTATATACATATGAAGGAAATTTCTTCTGCAATCCGTCCATCTTCGGACGACCGGAGCATCCGGGGCGGATCCAAGAGAGGTATCCTCATTGCAATAACACTGCATCGCCTTCCTCTTCTTTTTCTCTCCTCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb112</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>531658</contig_pos>
        <strand>+</strand>
        <context>TTTTTCTCTT[C/T]CCATTTTCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTGAAAATGAGGCGACATTTATCTAAGACACACTTCTTCTTTTTCTCTT</left_flank>
        <right_flank>CCATTTTCTGGCTGCAATTATTCCAACACGAGATTTCAAGATTCCAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGATCCACCACAATTCCTCATTTCATACGCCTTAATTAAAAGTCGATAGTTGTAGCACGAAAATTAAGAAATTTGAACATTCCATAAAACAAATTCATATCCCATCCTCCTCTTTGGCCAATTCACATTGAGCAATAATTCAACCATGAAAAGTTATTTGACCAGTTTTCATATTTATTTTTCCTTGATCTTTCTATTCAGCTCTTCAGTCGTCTTACCCATTCTCACACTAATATCGTCTCATGATAGTTTTCGAAATTCTACATTTTGCACTCACTAGTGGATCCAAAAAGTTCCCTCATTTCGAAACCTTTTGTGATTTGTGTTCTTCAGAATATCTGAATGAAAGTGTGTCACACCGGGAAGCTTATTTTGTAACAACAAAAAACGCCTCGCTACGGGAGAGGGACTATAATTACTGCTTCGAGTCTATCTGTGTGAGCAATAGGTGAAAATGAGGCGACATTTATCTAAGACACACTTCTTCTTTTTCTCTTCCCATTTTCTGGCTGCAATTATTCCAACACGAGATTTCAAGATTCCAAAAATCCTTTTCTACAAAACATCCTATCATTTTTGGCTCTTTTTCTTTCTCTTTTATTTCGACTTTTCATCTCATCTCATCCATTTCTAATGACTTTTTTCAACCTCGCACTGTGTTCTTGGTTTTCTTGGTTTTTCGTTTCGCTCCAATCATTTTCTTGTTCTTCCTTGTTTTTGATGTATCTAAACTCTCAATTCTTTTCAGATGTTCGAATAGAAGCTGAAGACGTAGAAACAATAAAAAAAGAGGAAAAATGGAATTTACCGAATGCAAAACTGTCCTTTTTCATTTGCCAGAAAAAAGTTTTTTCTACGATATTTTTATGTGAGTTTGATTAATGTAAAACCTGTAATAGAAGAGCTTTCACACTGTCATGTTTGAGTTTAATTATCTCAGCTCCTATAAGAGATATCAAAAATGTGTCAACTAATGAAATGTTTGTGATATTATGGTC</canonical>
            <polymorphic>TCTGATCCACCACAATTCCTCATTTCATACGCCTTAATTAAAAGTCGATAGTTGTAGCACGAAAATTAAGAAATTTGAACATTCCATAAAACAAATTCATATCCCATCCTCCTCTTTGGCCAATTCACATTGAGCAATAATTCAACCATGAAAAGTTATTTGACCAGTTTTCATATTTATTTTTCCTTGATCTTTCTATTCAGCTCTTCAGTCGTCTTACCCATTCTCACACTAATATCGTCTCATGATAGTTTTCGAAATTCTACATTTTGCACTCACTAGTGGATCCAAAAAGTTCCCTCATTTCGAAACCTTTTGTGATTTGTGTTCTTCAGAATATCTGAATGAAAGTGTGTCACACCGGGAAGCTTATTTTGTAACAACAAAAAACGCCTCGCTACGGGAGAGGGACTATAATTACTGCTTCGAGTCTATCTGTGTGAGCAATAGGTGAAAATGAGGCGACATTTATCTAAGACACACTTCTTCTTTTTCTCTTYCCATTTTCTGGCTGCAATTATTCCAACACGAGATTTCAAGATTCCAAAAATCCTTTTCTACAAAACATCCTATCATTTTTGGCTCTTTTTCTTTCTCTTTTATTTCGACTTTTCATCTCATCTCATCCATTTCTAATGACTTTTTTCAACCTCGCACTGTGTTCTTGGTTTTCTTGGTTTTTCGTTTCGCTCCAATCATTTTCTTGTTCTTCCTTGTTTTTGATGTATCTAAACTCTCAATTCTTTTCAGATGTTCGAATAGAAGCTGAAGACGTAGAAACAATAAAAAAAGAGGAAAAATGGAATTTACCGAATGCAAAACTGTCCTTTTTCATTTGCCAGAAAAAAGTTTTTTCTACGATATTTTTATGTGAGTTTGATTAATGTAAAACCTGTAATAGAAGAGCTTTCACACTGTCATGTTTGAGTTTAATTATCTCAGCTCCTATAAGAGATATCAAAAATGTGTCAACTAATGAAATGTTTGTGATATTATGGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTTTTGTGATTTGTGTTCTT</pcr_primer_p1>
		<pcr_primer_p2>TAGAAAAGGATTTTTGGAATCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCTTTTGTGATTTGTGTTCTTCAGAATATCTGAATGAAAGTGTGTCACACCGGGAAGCTTATTTTGTAACAACAAAAAACGCCTCGCTACGGGAGAGGGACTATAATTACTGCTTCGAGTCTATCTGTGTGAGCAATAGGTGAAAATGAGGCGACATTTATCTAAGACACACTTCTTCTTTTTCTCTTCCCATTTTCTGGCTGCAATTATTCCAACACGAGATTTCAAGATTCCAAAAATCCTTTTCTA</canonical_amplicon>
		<polymorphic_amplicon>ACCTTTTGTGATTTGTGTTCTTCAGAATATCTGAATGAAAGTGTGTCACACCGGGAAGCTTATTTTGTAACAACAAAAAACGCCTCGCTACGGGAGAGGGACTATAATTACTGCTTCGAGTCTATCTGTGTGAGCAATAGGTGAAAATGAGGCGACATTTATCTAAGACACACTTCTTCTTTTTCTCTTYCCATTTTCTGGCTGCAATTATTCCAACACGAGATTTCAAGATTCCAAAAATCCTTTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb113</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>538708</contig_pos>
        <strand>+</strand>
        <context>TTTCGTTGGG[G/T]AAAAGAACTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACTAAACATGGCCAAAAAGTGGCATAACCTATATTCAATTTTCGTTGGG</left_flank>
        <right_flank>AAAAGAACTCGTCTAGACTATAGTACTGCGTTCCCACTCATATTCTTCCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAATTCATCTCGAAGTCTGAAGAGTGTCCGGAAAACAGGGAAAGCTAAATTCAAAGAGAATGAAGGATATGTGGATTTCTATGTGTGCACTTGTAGAAGAAGTCGCAGATCCCTTGGGAACGATTGCTCCAAAGCGGTTTCGTATGAAATCAGAAAAGCAACGAAAAAGAAGGGGGAGGAAGACAAAAGGGAATGGATACAAAAAGTGCGTCGCGCTCAATACTAGAAGAAGTTAAAACAACATCGAAACTTCAGAAAGACACAAAAGGCTAGGAGGACAAAATGTCAACGAAGAAGAAGAAGAAGAAGAAAAAGAAGGGAGAAGTGGTGGTAGTGGTGACGAGGCGCCACAATTTGTTCGACCGGAAAATGGGAATTAGACTTGTCTATGTTTAGGCTTCGCTCTGTTTAGAAAATGCCCGGGATGTTTCTCTCTTCTGCAAAAAAAACTAAACATGGCCAAAAAGTGGCATAACCTATATTCAATTTTCGTTGGGTAAAAGAACTCGTCTAGACTATAGTACTGCGTTCCCACTCATATTCTTCCCAACACAAAAGAATACAAAGATGCAGAAGAGAAATGGGAAGAAGATGGAGCATTAAAGGAACACAATTTTGAGCGGACCAAGGCCAATCTCGAGAATGGAGGTTCGGAAATGAGCAGAGCTGCCAGATGTGGGAAGCAGTTGGGGAGAAAAGAGAAGAAGAAACGGGACCCAGGGAAATTGAAATGAAGAGGAAAGAAGAAGAAGAGGCTTCATTTTCGTTTTGCCGCGAAGAATATGAATTAGAAAATATCGAATTTCATTTGGGAGCAGAAGAAAAATAATCGGAAAGGAGGAATACGACTTTTCTTGAACTCTATACTCTGTGGAAAAAATGTACACAAAAAAAATGAAAATGTACAAATGTACAAATGTACATGTATTATTACATGAGAAACTCTATATAGGTTGACATTCAATTTGGAGGGAAGTATAGAAAAAAAAAGAAAAAGG</canonical>
            <polymorphic>ACAAATTCATCTCGAAGTCTGAAGAGTGTCCGGAAAACAGGGAAAGCTAAATTCAAAGAGAATGAAGGATATGTGGATTTCTATGTGTGCACTTGTAGAAGAAGTCGCAGATCCCTTGGGAACGATTGCTCCAAAGCGGTTTCGTATGAAATCAGAAAAGCAACGAAAAAGAAGGGGGAGGAAGACAAAAGGGAATGGATACAAAAAGTGCGTCGCGCTCAATACTAGAAGAAGTTAAAACAACATCGAAACTTCAGAAAGACACAAAAGGCTAGGAGGACAAAATGTCAACGAAGAAGAAGAAGAAGAAGAAAAAGAAGGGAGAAGTGGTGGTAGTGGTGACGAGGCGCCACAATTTGTTCGACCGGAAAATGGGAATTAGACTTGTCTATGTTTAGGCTTCGCTCTGTTTAGAAAATGCCCGGGATGTTTCTCTCTTCTGCAAAAAAAACTAAACATGGCCAAAAAGTGGCATAACCTATATTCAATTTTCGTTGGGKAAAAGAACTCGTCTAGACTATAGTACTGCGTTCCCACTCATATTCTTCCCAACACAAAAGAATACAAAGATGCAGAAGAGAAATGGGAAGAAGATGGAGCATTAAAGGAACACAATTTTGAGCGGACCAAGGCCAATCTCGAGAATGGAGGTTCGGAAATGAGCAGAGCTGCCAGATGTGGGAAGCAGTTGGGGAGAAAAGAGAAGAAGAAACGGGACCCAGGGAAATTGAAATGAAGAGGAAAGAAGAAGAAGAGGCTTCATTTTCGTTTTGCCGCGAAGAATATGAATTAGAAAATATCGAATTTCATTTGGGAGCAGAAGAAAAATAATCGGAAAGGAGGAATACGACTTTTCTTGAACTCTATACTCTGTGGAAAAAATGTACACAAAAAAAATGAAAATGTACAAATGTACAAATGTACATGTATTATTACATGAGAAACTCTATATAGGTTGACATTCAATTTGGAGGGAAGTATAGAAAAAAAAAGAAAAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGTGGTGGTAGTGGTGA</pcr_primer_p1>
		<pcr_primer_p2>GCATCTTTGTATTCTTTTGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGAAGTGGTGGTAGTGGTGACGAGGCGCCACAATTTGTTCGACCGGAAAATGGGAATTAGACTTGTCTATGTTTAGGCTTCGCTCTGTTTAGAAAATGCCCGGGATGTTTCTCTCTTCTGCAAAAAAAACTAAACATGGCCAAAAAGTGGCATAACCTATATTCAATTTTCGTTGGGTAAAAGAACTCGTCTAGACTATAGTACTGCGTTCCCACTCATATTCTTCCCAACACAAAAGAATACAAAGATGC</canonical_amplicon>
		<polymorphic_amplicon>AGAAGTGGTGGTAGTGGTGACGAGGCGCCACAATTTGTTCGACCGGAAAATGGGAATTAGACTTGTCTATGTTTAGGCTTCGCTCTGTTTAGAAAATGCCCGGGATGTTTCTCTCTTCTGCAAAAAAAACTAAACATGGCCAAAAAGTGGCATAACCTATATTCAATTTTCGTTGGGKAAAAGAACTCGTCTAGACTATAGTACTGCGTTCCCACTCATATTCTTCCCAACACAAAAGAATACAAAGATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb139</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>609719</contig_pos>
        <strand>+</strand>
        <context>AATCTACTGA[A/G]TCTGCATTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAGTCAGAACCAAAAGTTTCCAATTTTCGAAACATTGCAAATCTACTGA</left_flank>
        <right_flank>TCTGCATTTGTGCGTTTCGGTGTATTTCCACACTGCGACGGAAACTTGCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACACCGTCGAAATGTCGAATGTGAATTCGCCGTCGGGAGATGAGGAGAACGTTCGAAGAGGTGGTGCTGCTGGAGAGAAGAAGCAAAAGAAGAGACGTGATTCCATCATGTCTATTTTTAAGAGCAAAAACTGATCCATCCGTTACTCCGCTCTCTTTGTAAATATTCATAATTAACGATCTGTGAATAGCCTATCAGCATTCCATTTAGCTCCATTTTATTTGTTCTTATTCGCTATGTATGTCCTCTCAAAATATGAGGAGGACCAATAAACTATTCAACGATTTGTTTTCCAGTAAATAATTTTCAAGTTAAGATTTGGTCATCTTTCCCATCTATCAAATACTCTCTTTAAGCATCGGAAAATGGTTTGAACAACTTGATAATTAGATTGATTTAAGGTGTCAGACCAAATAAAAACTGAAAATATTTCTCAAATTTTGTTTCTTAGTCAGAACCAAAAGTTTCCAATTTTCGAAACATTGCAAATCTACTGAATCTGCATTTGTGCGTTTCGGTGTATTTCCACACTGCGACGGAAACTTGCACAGTTTATAAAATAGCATCCCCCAATTTTCAAACAAACTGAATTTAGAATCGATCCGTCCCCTATTCAATACTGATATAACTAAAAAATATATGCTGAGGATCGACTAGAATGGCCGAAATTAAAACCGACGACAGTGCAAATGACAGTTCCAGTACGTTACGCGAGTTTGTTATCCGTGCTCCCGAATACTGTATTGACAAGGTTTGATTTTTCAAGTTCACTCAGTTCATGAAGTTCTCTTTTTACAGTATGTTCGAATAAATGTACCGATTCCGCTTCCCGAATACACTTATTTGGAAGATTGGGTTGGAAAGTTGAAAGCGCAATCATCTGGAAAGTTTTTGGATTACGAAGGTGAAGTTTAATGATACAACTAATGTTTCAACTTGACAATGTTAATCAGATGCCAAAGAAGCTCTTCGAAAATTCATCTACGACGAAACGGTCA</canonical>
            <polymorphic>TTACACCGTCGAAATGTCGAATGTGAATTCGCCGTCGGGAGATGAGGAGAACGTTCGAAGAGGTGGTGCTGCTGGAGAGAAGAAGCAAAAGAAGAGACGTGATTCCATCATGTCTATTTTTAAGAGCAAAAACTGATCCATCCGTTACTCCGCTCTCTTTGTAAATATTCATAATTAACGATCTGTGAATAGCCTATCAGCATTCCATTTAGCTCCATTTTATTTGTTCTTATTCGCTATGTATGTCCTCTCAAAATATGAGGAGGACCAATAAACTATTCAACGATTTGTTTTCCAGTAAATAATTTTCAAGTTAAGATTTGGTCATCTTTCCCATCTATCAAATACTCTCTTTAAGCATCGGAAAATGGTTTGAACAACTTGATAATTAGATTGATTTAAGGTGTCAGACCAAATAAAAACTGAAAATATTTCTCAAATTTTGTTTCTTAGTCAGAACCAAAAGTTTCCAATTTTCGAAACATTGCAAATCTACTGARTCTGCATTTGTGCGTTTCGGTGTATTTCCACACTGCGACGGAAACTTGCACAGTTTATAAAATAGCATCCCCCAATTTTCAAACAAACTGAATTTAGAATCGATCCGTCCCCTATTCAATACTGATATAACTAAAAAATATATGCTGAGGATCGACTAGAATGGCCGAAATTAAAACCGACGACAGTGCAAATGACAGTTCCAGTACGTTACGCGAGTTTGTTATCCGTGCTCCCGAATACTGTATTGACAAGGTTTGATTTTTCAAGTTCACTCAGTTCATGAAGTTCTCTTTTTACAGTATGTTCGAATAAATGTACCGATTCCGCTTCCCGAATACACTTATTTGGAAGATTGGGTTGGAAAGTTGAAAGCGCAATCATCTGGAAAGTTTTTGGATTACGAAGGTGAAGTTTAATGATACAACTAATGTTTCAACTTGACAATGTTAATCAGATGCCAAAGAAGCTCTTCGAAAATTCATCTACGACGAAACGGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>397 224 179 101 99</canonical_bands>
                <polymorphic_bands>496 224 179 101</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCAGACCAAATAAAAACTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TCGATCCTCAGCATATATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCAGACCAAATAAAAACTGAAAATATTTCTCAAATTTTGTTTCTTAGTCAGAACCAAAAGTTTCCAATTTTCGAAACATTGCAAATCTACTGAATCTGCATTTGTGCGTTTCGGTGTATTTCCACACTGCGACGGAAACTTGCACAGTTTATAAAATAGCATCCCCCAATTTTCAAACAAACTGAATTTAGAATCGATCCGTCCCCTATTCAATACTGATATAACTAAAAAATATATGCTGAGGATCGA</canonical_amplicon>
		<polymorphic_amplicon>GTCAGACCAAATAAAAACTGAAAATATTTCTCAAATTTTGTTTCTTAGTCAGAACCAAAAGTTTCCAATTTTCGAAACATTGCAAATCTACTGARTCTGCATTTGTGCGTTTCGGTGTATTTCCACACTGCGACGGAAACTTGCACAGTTTATAAAATAGCATCCCCCAATTTTCAAACAAACTGAATTTAGAATCGATCCGTCCCCTATTCAATACTGATATAACTAAAAAATATATGCTGAGGATCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb140</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>639203</contig_pos>
        <strand>+</strand>
        <context>TACTTTTGAC[A/T]TCACTTCCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGTGTTGGGATTTTCTTTTTCGGACCAAAGCAAGCGGATTACTTTTGAC</left_flank>
        <right_flank>TCACTTCCTAACTGCTGCTCATTCAACTTCTTCTCCTGTCCTGGTTTTCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAACGTAAAAAAGAGAATCATGCCCTCTAACAGTTCAAATGTACTTTTCTTCTTTTCTTTGCAGGCAACAATCAGCAACTACTCAGAGGCCTACATCGTTTGCCGCCGCCAGTTCTCTCTTCGGAAATTCTGAATACGGGAATCCACTTGGAGCTCCTGGAACACCAATCGGTATGTCTTTTTTTGTTTTTGTCTGTCTCTTGTTTCCTTCTCTCCATTTCTTCTTCTGAGATGCGCCGATTGAAGAGGTTTTTATTATTTTCTCGTATTCAGAATCTAACCCTTCTTTCTCCCGAAAAAAGATAGAGTTATCCTCCAATTCACATCCAATTTTTCAAAAACTCTTCTTCTTCTTATTTCTACTTCTCGAACATATTTTTCTCCTAACCACCCTCTAGGGCCGACAGTCGTCGTATGACGCAGTTTAATAATTCGACAAACGAATTTTGTGTTGGGATTTTCTTTTTCGGACCAAAGCAAGCGGATTACTTTTGACATCACTTCCTAACTGCTGCTCATTCAACTTCTTCTCCTGTCCTGGTTTTCATATCGTAGAAGGCAGGTGGCCGATTGTTCCATCGGAGAGTGATTTATTTTTGCTTCTGTGTTGATTGGTCCGAAATTCAGACTCCGAGTTTTATTTACCTCCATATGTCTGGCTTATTTCATCTTCTGGTTATTCGTTTTAGTATTCAGTCCCAGAAACTGAAAATTTTGTGGGCGGAAAATCAGTAGGTAAAAAATCAAATTAAGATCCTTATGTCCTCTTTTCAATTATTCAAATCACAAGGGGGACCACTTTACAATTCGCTCTTCTTTCAATATATCACGAGGTGCCCACCAAAATCAGGAGGTGTTTACCAATAGTTTCTGGGCCTGGATTCAAGATATACTTTGAATTTGTTAGCTCGACCCGGACACCTAATTTGAATATCCTCCGAAATCCATTAACTTCCATATCCTTTCTCAAATTCATCCCTAATCCTTGTGCCCTTGT</canonical>
            <polymorphic>CAAAAACGTAAAAAAGAGAATCATGCCCTCTAACAGTTCAAATGTACTTTTCTTCTTTTCTTTGCAGGCAACAATCAGCAACTACTCAGAGGCCTACATCGTTTGCCGCCGCCAGTTCTCTCTTCGGAAATTCTGAATACGGGAATCCACTTGGAGCTCCTGGAACACCAATCGGTATGTCTTTTTTTGTTTTTGTCTGTCTCTTGTTTCCTTCTCTCCATTTCTTCTTCTGAGATGCGCCGATTGAAGAGGTTTTTATTATTTTCTCGTATTCAGAATCTAACCCTTCTTTCTCCCGAAAAAAGATAGAGTTATCCTCCAATTCACATCCAATTTTTCAAAAACTCTTCTTCTTCTTATTTCTACTTCTCGAACATATTTTTCTCCTAACCACCCTCTAGGGCCGACAGTCGTCGTATGACGCAGTTTAATAATTCGACAAACGAATTTTGTGTTGGGATTTTCTTTTTCGGACCAAAGCAAGCGGATTACTTTTGACWTCACTTCCTAACTGCTGCTCATTCAACTTCTTCTCCTGTCCTGGTTTTCATATCGTAGAAGGCAGGTGGCCGATTGTTCCATCGGAGAGTGATTTATTTTTGCTTCTGTGTTGATTGGTCCGAAATTCAGACTCCGAGTTTTATTTACCTCCATATGTCTGGCTTATTTCATCTTCTGGTTATTCGTTTTAGTATTCAGTCCCAGAAACTGAAAATTTTGTGGGCGGAAAATCAGTAGGTAAAAAATCAAATTAAGATCCTTATGTCCTCTTTTCAATTATTCAAATCACAAGGGGGACCACTTTACAATTCGCTCTTCTTTCAATATATCACGAGGTGCCCACCAAAATCAGGAGGTGTTTACCAATAGTTTCTGGGCCTGGATTCAAGATATACTTTGAATTTGTTAGCTCGACCCGGACACCTAATTTGAATATCCTCCGAAATCCATTAACTTCCATATCCTTTCTCAAATTCATCCCTAATCCTTGTGCCCTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCGTATGACGCAGTTTAATAAT</pcr_primer_p1>
		<pcr_primer_p2>CCAGACATATGGAGGTAAATAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCGTATGACGCAGTTTAATAATTCGACAAACGAATTTTGTGTTGGGATTTTCTTTTTCGGACCAAAGCAAGCGGATTACTTTTGACATCACTTCCTAACTGCTGCTCATTCAACTTCTTCTCCTGTCCTGGTTTTCATATCGTAGAAGGCAGGTGGCCGATTGTTCCATCGGAGAGTGATTTATTTTTGCTTCTGTGTTGATTGGTCCGAAATTCAGACTCCGAGTTTTATTTACCTCCATATGTCTGG</canonical_amplicon>
		<polymorphic_amplicon>GTCGTATGACGCAGTTTAATAATTCGACAAACGAATTTTGTGTTGGGATTTTCTTTTTCGGACCAAAGCAAGCGGATTACTTTTGACWTCACTTCCTAACTGCTGCTCATTCAACTTCTTCTCCTGTCCTGGTTTTCATATCGTAGAAGGCAGGTGGCCGATTGTTCCATCGGAGAGTGATTTATTTTTGCTTCTGTGTTGATTGGTCCGAAATTCAGACTCCGAGTTTTATTTACCTCCATATGTCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb141</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>639242</contig_pos>
        <strand>+</strand>
        <context>TCTTCTCCTG[C/T]CCTGGTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTACTTTTGACATCACTTCCTAACTGCTGCTCATTCAACTTCTTCTCCTG</left_flank>
        <right_flank>CCTGGTTTTCATATCGTAGAAGGCAGGTGGCCGATTGTTCCATCGGAGAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGTACTTTTCTTCTTTTCTTTGCAGGCAACAATCAGCAACTACTCAGAGGCCTACATCGTTTGCCGCCGCCAGTTCTCTCTTCGGAAATTCTGAATACGGGAATCCACTTGGAGCTCCTGGAACACCAATCGGTATGTCTTTTTTTGTTTTTGTCTGTCTCTTGTTTCCTTCTCTCCATTTCTTCTTCTGAGATGCGCCGATTGAAGAGGTTTTTATTATTTTCTCGTATTCAGAATCTAACCCTTCTTTCTCCCGAAAAAAGATAGAGTTATCCTCCAATTCACATCCAATTTTTCAAAAACTCTTCTTCTTCTTATTTCTACTTCTCGAACATATTTTTCTCCTAACCACCCTCTAGGGCCGACAGTCGTCGTATGACGCAGTTTAATAATTCGACAAACGAATTTTGTGTTGGGATTTTCTTTTTCGGACCAAAGCAAGCGGATTACTTTTGACATCACTTCCTAACTGCTGCTCATTCAACTTCTTCTCCTGTCCTGGTTTTCATATCGTAGAAGGCAGGTGGCCGATTGTTCCATCGGAGAGTGATTTATTTTTGCTTCTGTGTTGATTGGTCCGAAATTCAGACTCCGAGTTTTATTTACCTCCATATGTCTGGCTTATTTCATCTTCTGGTTATTCGTTTTAGTATTCAGTCCCAGAAACTGAAAATTTTGTGGGCGGAAAATCAGTAGGTAAAAAATCAAATTAAGATCCTTATGTCCTCTTTTCAATTATTCAAATCACAAGGGGGACCACTTTACAATTCGCTCTTCTTTCAATATATCACGAGGTGCCCACCAAAATCAGGAGGTGTTTACCAATAGTTTCTGGGCCTGGATTCAAGATATACTTTGAATTTGTTAGCTCGACCCGGACACCTAATTTGAATATCCTCCGAAATCCATTAACTTCCATATCCTTTCTCAAATTCATCCCTAATCCTTGTGCCCTTGTCATGCCCTTCTTCGATATGTCGTATCCTTCTGAACTTTT</canonical>
            <polymorphic>AAATGTACTTTTCTTCTTTTCTTTGCAGGCAACAATCAGCAACTACTCAGAGGCCTACATCGTTTGCCGCCGCCAGTTCTCTCTTCGGAAATTCTGAATACGGGAATCCACTTGGAGCTCCTGGAACACCAATCGGTATGTCTTTTTTTGTTTTTGTCTGTCTCTTGTTTCCTTCTCTCCATTTCTTCTTCTGAGATGCGCCGATTGAAGAGGTTTTTATTATTTTCTCGTATTCAGAATCTAACCCTTCTTTCTCCCGAAAAAAGATAGAGTTATCCTCCAATTCACATCCAATTTTTCAAAAACTCTTCTTCTTCTTATTTCTACTTCTCGAACATATTTTTCTCCTAACCACCCTCTAGGGCCGACAGTCGTCGTATGACGCAGTTTAATAATTCGACAAACGAATTTTGTGTTGGGATTTTCTTTTTCGGACCAAAGCAAGCGGATTACTTTTGACATCACTTCCTAACTGCTGCTCATTCAACTTCTTCTCCTGYCCTGGTTTTCATATCGTAGAAGGCAGGTGGCCGATTGTTCCATCGGAGAGTGATTTATTTTTGCTTCTGTGTTGATTGGTCCGAAATTCAGACTCCGAGTTTTATTTACCTCCATATGTCTGGCTTATTTCATCTTCTGGTTATTCGTTTTAGTATTCAGTCCCAGAAACTGAAAATTTTGTGGGCGGAAAATCAGTAGGTAAAAAATCAAATTAAGATCCTTATGTCCTCTTTTCAATTATTCAAATCACAAGGGGGACCACTTTACAATTCGCTCTTCTTTCAATATATCACGAGGTGCCCACCAAAATCAGGAGGTGTTTACCAATAGTTTCTGGGCCTGGATTCAAGATATACTTTGAATTTGTTAGCTCGACCCGGACACCTAATTTGAATATCCTCCGAAATCCATTAACTTCCATATCCTTTCTCAAATTCATCCCTAATCCTTGTGCCCTTGTCATGCCCTTCTTCGATATGTCGTATCCTTCTGAACTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCGTATGACGCAGTTTAATAAT</pcr_primer_p1>
		<pcr_primer_p2>CCAGACATATGGAGGTAAATAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCGTATGACGCAGTTTAATAATTCGACAAACGAATTTTGTGTTGGGATTTTCTTTTTCGGACCAAAGCAAGCGGATTACTTTTGACATCACTTCCTAACTGCTGCTCATTCAACTTCTTCTCCTGTCCTGGTTTTCATATCGTAGAAGGCAGGTGGCCGATTGTTCCATCGGAGAGTGATTTATTTTTGCTTCTGTGTTGATTGGTCCGAAATTCAGACTCCGAGTTTTATTTACCTCCATATGTCTGG</canonical_amplicon>
		<polymorphic_amplicon>GTCGTATGACGCAGTTTAATAATTCGACAAACGAATTTTGTGTTGGGATTTTCTTTTTCGGACCAAAGCAAGCGGATTACTTTTGACATCACTTCCTAACTGCTGCTCATTCAACTTCTTCTCCTGYCCTGGTTTTCATATCGTAGAAGGCAGGTGGCCGATTGTTCCATCGGAGAGTGATTTATTTTTGCTTCTGTGTTGATTGGTCCGAAATTCAGACTCCGAGTTTTATTTACCTCCATATGTCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb142</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>641582</contig_pos>
        <strand></strand>
        <context>CCTTAACAGA[C/T]ACCTTTCCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCCTGCTGAATAATCTTTGTCAGTGGAACATCGAAGACTCCTTAACAGA</left_flank>
        <right_flank>ACCTTTCCAGGTAATTTTATTGCAAAAAAAGTTTCAAAATTCAAAAATAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCATCCCTCTATGCTTCACAGTATCACAATGTGAACATGAAGCAAAGTCAACATCAGACACAGAGCACTGGAGGTGTACCCAACAACGTTCTCCAACGAGTTTATTCGTTGCCAAACGGAGGGTACGGGAGTGCTGGGGAATCGCCCCCGTGTAGTTCGAACGATTCCGGCAGTGAATCGCCGAACGGTAGCTTCTCGCCTGGTCTGGATCTTGACGATAATGGTGAGTAGTTTTTCTGAAGGTTTCAATTTGAAGGCTAGCTCTTTTCCAGGTCCATTCTCTGCTGGATTCCTATCCGCATCACCACACAAGTCGCAGAAGACGGCTGCTGTGCCACGCGTTCAGACGAATCGATTCTTGTCGTACGATCAGTCGAATATGTAAGATAGCTTAACTCGATTTTTCTATTCTATTCTATGGGGTTTCAGAAGTGACAATCAATTCAGTAGCCTGCTGAATAATCTTTGTCAGTGGAACATCGAAGACTCCTTAACAGACACCTTTCCAGGTAATTTTATTGCAAAAAAAGTTTCAAAATTCAAAAATAATAAAAATATCTCCAGGACTCTTGACATCGAAATGGTCTACGACTGCTGCTGACCAGTCTGCTCCAGCAACCACGCCGTCGGTGACTACTCCGAGTCGTTTGCCAGTTTTCGCACAACTCAGCAATCCACAATAAGAGTGTGGCTTGCCCAAAAAACTTCAGAGAGAACCGTCCATTTTCAGGGATTTCTAGAAAGGTTCTATTCAAATTTTTTCTTCTAATCAATCTTTCCCCGTAATATCTTCAAGATTCATATATACTATTAATAATCTTTTCTTGTTATGTTTTCAATTTTCTATGTATAGTCTCTAGTGCACTCCCCGCCCCTTTTTTTCCTTTTTCCCAGTCTAAATGTATTCATGCCGCTAGTTGACACCCTTCCCCTTATTTAATCTTTCAACCCGATGTCCTTCTTTTTCCAACCCAATCAAAATCTCTTGATTTCTTTCAT</canonical>
            <polymorphic>ACCATCCCTCTATGCTTCACAGTATCACAATGTGAACATGAAGCAAAGTCAACATCAGACACAGAGCACTGGAGGTGTACCCAACAACGTTCTCCAACGAGTTTATTCGTTGCCAAACGGAGGGTACGGGAGTGCTGGGGAATCGCCCCCGTGTAGTTCGAACGATTCCGGCAGTGAATCGCCGAACGGTAGCTTCTCGCCTGGTCTGGATCTTGACGATAATGGTGAGTAGTTTTTCTGAAGGTTTCAATTTGAAGGCTAGCTCTTTTCCAGGTCCATTCTCTGCTGGATTCCTATCCGCATCACCACACAAGTCGCAGAAGACGGCTGCTGTGCCACGCGTTCAGACGAATCGATTCTTGTCGTACGATCAGTCGAATATGTAAGATAGCTTAACTCGATTTTTCTATTCTATTCTATGGGGTTTCAGAAGTGACAATCAATTCAGTAGCCTGCTGAATAATCTTTGTCAGTGGAACATCGAAGACTCCTTAACAGAYACCTTTCCAGGTAATTTTATTGCAAAAAAAGTTTCAAAATTCAAAAATAATAAAAATATCTCCAGGACTCTTGACATCGAAATGGTCTACGACTGCTGCTGACCAGTCTGCTCCAGCAACCACGCCGTCGGTGACTACTCCGAGTCGTTTGCCAGTTTTCGCACAACTCAGCAATCCACAATAAGAGTGTGGCTTGCCCAAAAAACTTCAGAGAGAACCGTCCATTTTCAGGGATTTCTAGAAAGGTTCTATTCAAATTTTTTCTTCTAATCAATCTTTCCCCGTAATATCTTCAAGATTCATATATACTATTAATAATCTTTTCTTGTTATGTTTTCAATTTTCTATGTATAGTCTCTAGTGCACTCCCCGCCCCTTTTTTTCCTTTTTCCCAGTCTAAATGTATTCATGCCGCTAGTTGACACCCTTCCCCTTATTTAATCTTTCAACCCGATGTCCTTCTTTTTCCAACCCAATCAAAATCTCTTGATTTCTTTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>172 121 97 78 76 59 57 51 40 30 27 26 25 23 19 19 15 11 11 9 8 7 7 3 3 2 2 2</canonical_bands>
                <polymorphic_bands>172 147 97 78 76 59 57 51 40 30 27 25 23 19 19 15 11 11 9 8 7 7 3 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTAGCCTGCTGAATAATCTT</pcr_primer_p1>
		<pcr_primer_p2>CCACACTCTTATTGTGGATTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAGTAGCCTGCTGAATAATCTTTGTCAGTGGAACATCGAAGACTCCTTAACAGACACCTTTCCAGGTAATTTTATTGCAAAAAAAGTTTCAAAATTCAAAAATAATAAAAATATCTCCAGGACTCTTGACATCGAAATGGTCTACGACTGCTGCTGACCAGTCTGCTCCAGCAACCACGCCGTCGGTGACTACTCCGAGTCGTTTGCCAGTTTTCGCACAACTCAGCAATCCACAATAAGAGTGTGG</canonical_amplicon>
		<polymorphic_amplicon>CAGTAGCCTGCTGAATAATCTTTGTCAGTGGAACATCGAAGACTCCTTAACAGAYACCTTTCCAGGTAATTTTATTGCAAAAAAAGTTTCAAAATTCAAAAATAATAAAAATATCTCCAGGACTCTTGACATCGAAATGGTCTACGACTGCTGCTGACCAGTCTGCTCCAGCAACCACGCCGTCGGTGACTACTCCGAGTCGTTTGCCAGTTTTCGCACAACTCAGCAATCCACAATAAGAGTGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb143</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>739200</contig_pos>
        <strand>+</strand>
        <context>TCAAAGTCAR[C/G]AGTGACTGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AACACCGTCTTGGCTATCAGTTTTTGTTGTTGCGGCCATTTCAAAGTCAA</left_flank>
        <right_flank>AGTGACTGTGTTTTGAAATAGGACAAGTAAAGAGTTTGTTGCTGTTAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAATTTTAAACTTAATATGCATGATTTCTAAATACCACGGTATTCTAATATTTCATCTAAGTTTTCTCCTAGTATTCATATTTTTCAAGATTCTTCGAAAAGAAAAGATGGCTACACATGAAAAGATTCACCTGCTAGCATAATAATTACACTTGTTTCGTTGATCCGCAATTTAAAATTGAAAAGGAAAAACGAACTACTTTTTCTGAACCATCCTCTTTATATCGCCACTTTATATTTTTTTTTTCTCCAATACGTTCGACCTTCAAATTTAGTGTGTAAATACGATCATCTATCTCACTCCCAATAAGTATTAAATTCTAAACAAAACATTTGTGTTTAGATGTCTGAATTCAAAATCGCACATCCTTCTCTTTTCTGCGTCTTGCTTCTCTCGCTTTTTGTAACGTCCACTCGAAGAGTCGAATGATAAAAACGACTTGACATAAACACCGTCTTGGCTATCAGTTTTTGTTGTTGCGGCCATTTCAAAGTCAAGAGTGACTGTGTTTTGAAATAGGACAAGTAAAGAGTTTGTTGCTGTTAAAAGATTCACACTTAATTTTAGAATTCTCTATTTAGTTGGGGATCCGGAGAGGAAGTCTGTATGTACTAGAATCATAATTTTCGTCTGATACCTGCTCGTAGAGCAATGTGCGTTCTGTGATAAACGTCTGTGCTCTCAAGTATTTCTTCTAACTGTTTGTTTGTTTTTCGTTCCTTCCTCTTTCCTCTCCTTACTGTGATCTCGTGGATGCCATGTGGTATTTTCGTACAACCTAATACTGTTTTTGGAAAGTCCTATCAAAAACAATTTTTCGGGGAATCTTATTCTATTCTTATCACTTCATTTGTGTTATCAGATTTTTTTCTTATTATCTTTCTTTCCTAGAGGCGGTTCTGTGGCCACTGGTCAATGGCCTAAAGTCAGTTTATCTCTCCCATTTTCACATGTGGCGTGACCTCTTGGTCTCTGTGAAAATCGCCTCTTTGCTCTCT</canonical>
            <polymorphic>TTAATTTTAAACTTAATATGCATGATTTCTAAATACCACGGTATTCTAATATTTCATCTAAGTTTTCTCCTAGTATTCATATTTTTCAAGATTCTTCGAAAAGAAAAGATGGCTACACATGAAAAGATTCACCTGCTAGCATAATAATTACACTTGTTTCGTTGATCCGCAATTTAAAATTGAAAAGGAAAAACGAACTACTTTTTCTGAACCATCCTCTTTATATCGCCACTTTATATTTTTTTTTTCTCCAATACGTTCGACCTTCAAATTTAGTGTGTAAATACGATCATCTATCTCACTCCCAATAAGTATTAAATTCTAAACAAAACATTTGTGTTTAGATGTCTGAATTCAAAATCGCACATCCTTCTCTTTTCTGCGTCTTGCTTCTCTCGCTTTTTGTAACGTCCACTCGAAGAGTCGAATGATAAAAACGACTTGACATAAACACCGTCTTGGCTATCAGTTTTTGTTGTTGCGGCCATTTCAAAGTCAASAGTGACTGTGTTTTGAAATAGGACAAGTAAAGAGTTTGTTGCTGTTAAAAGATTCACACTTAATTTTAGAATTCTCTATTTAGTTGGGGATCCGGAGAGGAAGTCTGTATGTACTAGAATCATAATTTTCGTCTGATACCTGCTCGTAGAGCAATGTGCGTTCTGTGATAAACGTCTGTGCTCTCAAGTATTTCTTCTAACTGTTTGTTTGTTTTTCGTTCCTTCCTCTTTCCTCTCCTTACTGTGATCTCGTGGATGCCATGTGGTATTTTCGTACAACCTAATACTGTTTTTGGAAAGTCCTATCAAAAACAATTTTTCGGGGAATCTTATTCTATTCTTATCACTTCATTTGTGTTATCAGATTTTTTTCTTATTATCTTTCTTTCCTAGAGGCGGTTCTGTGGCCACTGGTCAATGGCCTAAAGTCAGTTTATCTCTCCCATTTTCACATGTGGCGTGACCTCTTGGTCTCTGTGAAAATCGCCTCTTTGCTCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>410 408 95 87</canonical_bands>
                <polymorphic_bands>505 408 87</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATGATAAAAACGACTTGACATA</pcr_primer_p1>
		<pcr_primer_p2>GTTTATCACAGAACGCACATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAATGATAAAAACGACTTGACATAAACACCGTCTTGGCTATCAGTTTTTGTTGTTGCGGCCATTTCAAAGTCAAGAGTGACTGTGTTTTGAAATAGGACAAGTAAAGAGTTTGTTGCTGTTAAAAGATTCACACTTAATTTTAGAATTCTCTATTTAGTTGGGGATCCGGAGAGGAAGTCTGTATGTACTAGAATCATAATTTTCGTCTGATACCTGCTCGTAGAGCAATGTGCGTTCTGTGATAAAC</canonical_amplicon>
		<polymorphic_amplicon>GAATGATAAAAACGACTTGACATAAACACCGTCTTGGCTATCAGTTTTTGTTGTTGCGGCCATTTCAAAGTCAASAGTGACTGTGTTTTGAAATAGGACAAGTAAAGAGTTTGTTGCTGTTAAAAGATTCACACTTAATTTTAGAATTCTCTATTTAGTTGGGGATCCGGAGAGGAAGTCTGTATGTACTAGAATCATAATTTTCGTCTGATACCTGCTCGTAGAGCAATGTGCGTTCTGTGATAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb144</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>739199</contig_pos>
        <strand>+</strand>
        <context>TTCAAAGTCA[A/G]SAGTGACTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACACCGTCTTGGCTATCAGTTTTTGTTGTTGCGGCCATTTCAAAGTCA</left_flank>
        <right_flank>GAGTGACTGTGTTTTGAAATAGGACAAGTAAAGAGTTTGTTGCTGTTAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAATTTTAAACTTAATATGCATGATTTCTAAATACCACGGTATTCTAATATTTCATCTAAGTTTTCTCCTAGTATTCATATTTTTCAAGATTCTTCGAAAAGAAAAGATGGCTACACATGAAAAGATTCACCTGCTAGCATAATAATTACACTTGTTTCGTTGATCCGCAATTTAAAATTGAAAAGGAAAAACGAACTACTTTTTCTGAACCATCCTCTTTATATCGCCACTTTATATTTTTTTTTTCTCCAATACGTTCGACCTTCAAATTTAGTGTGTAAATACGATCATCTATCTCACTCCCAATAAGTATTAAATTCTAAACAAAACATTTGTGTTTAGATGTCTGAATTCAAAATCGCACATCCTTCTCTTTTCTGCGTCTTGCTTCTCTCGCTTTTTGTAACGTCCACTCGAAGAGTCGAATGATAAAAACGACTTGACATAAACACCGTCTTGGCTATCAGTTTTTGTTGTTGCGGCCATTTCAAAGTCAAGAGTGACTGTGTTTTGAAATAGGACAAGTAAAGAGTTTGTTGCTGTTAAAAGATTCACACTTAATTTTAGAATTCTCTATTTAGTTGGGGATCCGGAGAGGAAGTCTGTATGTACTAGAATCATAATTTTCGTCTGATACCTGCTCGTAGAGCAATGTGCGTTCTGTGATAAACGTCTGTGCTCTCAAGTATTTCTTCTAACTGTTTGTTTGTTTTTCGTTCCTTCCTCTTTCCTCTCCTTACTGTGATCTCGTGGATGCCATGTGGTATTTTCGTACAACCTAATACTGTTTTTGGAAAGTCCTATCAAAAACAATTTTTCGGGGAATCTTATTCTATTCTTATCACTTCATTTGTGTTATCAGATTTTTTTCTTATTATCTTTCTTTCCTAGAGGCGGTTCTGTGGCCACTGGTCAATGGCCTAAAGTCAGTTTATCTCTCCCATTTTCACATGTGGCGTGACCTCTTGGTCTCTGTGAAAATCGCCTCTTTGCTCTC</canonical>
            <polymorphic>TTTAATTTTAAACTTAATATGCATGATTTCTAAATACCACGGTATTCTAATATTTCATCTAAGTTTTCTCCTAGTATTCATATTTTTCAAGATTCTTCGAAAAGAAAAGATGGCTACACATGAAAAGATTCACCTGCTAGCATAATAATTACACTTGTTTCGTTGATCCGCAATTTAAAATTGAAAAGGAAAAACGAACTACTTTTTCTGAACCATCCTCTTTATATCGCCACTTTATATTTTTTTTTTCTCCAATACGTTCGACCTTCAAATTTAGTGTGTAAATACGATCATCTATCTCACTCCCAATAAGTATTAAATTCTAAACAAAACATTTGTGTTTAGATGTCTGAATTCAAAATCGCACATCCTTCTCTTTTCTGCGTCTTGCTTCTCTCGCTTTTTGTAACGTCCACTCGAAGAGTCGAATGATAAAAACGACTTGACATAAACACCGTCTTGGCTATCAGTTTTTGTTGTTGCGGCCATTTCAAAGTCARGAGTGACTGTGTTTTGAAATAGGACAAGTAAAGAGTTTGTTGCTGTTAAAAGATTCACACTTAATTTTAGAATTCTCTATTTAGTTGGGGATCCGGAGAGGAAGTCTGTATGTACTAGAATCATAATTTTCGTCTGATACCTGCTCGTAGAGCAATGTGCGTTCTGTGATAAACGTCTGTGCTCTCAAGTATTTCTTCTAACTGTTTGTTTGTTTTTCGTTCCTTCCTCTTTCCTCTCCTTACTGTGATCTCGTGGATGCCATGTGGTATTTTCGTACAACCTAATACTGTTTTTGGAAAGTCCTATCAAAAACAATTTTTCGGGGAATCTTATTCTATTCTTATCACTTCATTTGTGTTATCAGATTTTTTTCTTATTATCTTTCTTTCCTAGAGGCGGTTCTGTGGCCACTGGTCAATGGCCTAAAGTCAGTTTATCTCTCCCATTTTCACATGTGGCGTGACCTCTTGGTCTCTGTGAAAATCGCCTCTTTGCTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATGATAAAAACGACTTGACATA</pcr_primer_p1>
		<pcr_primer_p2>GTTTATCACAGAACGCACATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAATGATAAAAACGACTTGACATAAACACCGTCTTGGCTATCAGTTTTTGTTGTTGCGGCCATTTCAAAGTCAAGAGTGACTGTGTTTTGAAATAGGACAAGTAAAGAGTTTGTTGCTGTTAAAAGATTCACACTTAATTTTAGAATTCTCTATTTAGTTGGGGATCCGGAGAGGAAGTCTGTATGTACTAGAATCATAATTTTCGTCTGATACCTGCTCGTAGAGCAATGTGCGTTCTGTGATAAAC</canonical_amplicon>
		<polymorphic_amplicon>GAATGATAAAAACGACTTGACATAAACACCGTCTTGGCTATCAGTTTTTGTTGTTGCGGCCATTTCAAAGTCARGAGTGACTGTGTTTTGAAATAGGACAAGTAAAGAGTTTGTTGCTGTTAAAAGATTCACACTTAATTTTAGAATTCTCTATTTAGTTGGGGATCCGGAGAGGAAGTCTGTATGTACTAGAATCATAATTTTCGTCTGATACCTGCTCGTAGAGCAATGTGCGTTCTGTGATAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb145</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>739056</contig_pos>
        <strand>+</strand>
        <context>TGTCTGAATT[C/T]AAAATCGCAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATAAGTATTAAATTCTAAACAAAACATTTGTGTTTAGATGTCTGAATT</left_flank>
        <right_flank>AAAATCGCACATCCTTCTCTTTTCTGCGTCTTGCTTCTCTCGCTTTTTGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGTCTGGTTCTGTGATGTTCAGCAGTCTGTGATATTTTTACAAATTTTTGTCTTCCTTGTGAATTTTTCTAGTTTGAATTACGATTTCATTCTGAACCATTTCGAAAAAGATGTGAAACACTGGAGCAAGTAGATGTATAGTTTTAATTTTAAACTTAATATGCATGATTTCTAAATACCACGGTATTCTAATATTTCATCTAAGTTTTCTCCTAGTATTCATATTTTTCAAGATTCTTCGAAAAGAAAAGATGGCTACACATGAAAAGATTCACCTGCTAGCATAATAATTACACTTGTTTCGTTGATCCGCAATTTAAAATTGAAAAGGAAAAACGAACTACTTTTTCTGAACCATCCTCTTTATATCGCCACTTTATATTTTTTTTTTCTCCAATACGTTCGACCTTCAAATTTAGTGTGTAAATACGATCATCTATCTCACTCCCAATAAGTATTAAATTCTAAACAAAACATTTGTGTTTAGATGTCTGAATTCAAAATCGCACATCCTTCTCTTTTCTGCGTCTTGCTTCTCTCGCTTTTTGTAACGTCCACTCGAAGAGTCGAATGATAAAAACGACTTGACATAAACACCGTCTTGGCTATCAGTTTTTGTTGTTGCGGCCATTTCAAAGTCAAGAGTGACTGTGTTTTGAAATAGGACAAGTAAAGAGTTTGTTGCTGTTAAAAGATTCACACTTAATTTTAGAATTCTCTATTTAGTTGGGGATCCGGAGAGGAAGTCTGTATGTACTAGAATCATAATTTTCGTCTGATACCTGCTCGTAGAGCAATGTGCGTTCTGTGATAAACGTCTGTGCTCTCAAGTATTTCTTCTAACTGTTTGTTTGTTTTTCGTTCCTTCCTCTTTCCTCTCCTTACTGTGATCTCGTGGATGCCATGTGGTATTTTCGTACAACCTAATACTGTTTTTGGAAAGTCCTATCAAAAACAATTTTTCGGGGAATCTTATTCTATTCTTATCACTTCATTTGT</canonical>
            <polymorphic>GCGTCTGGTTCTGTGATGTTCAGCAGTCTGTGATATTTTTACAAATTTTTGTCTTCCTTGTGAATTTTTCTAGTTTGAATTACGATTTCATTCTGAACCATTTCGAAAAAGATGTGAAACACTGGAGCAAGTAGATGTATAGTTTTAATTTTAAACTTAATATGCATGATTTCTAAATACCACGGTATTCTAATATTTCATCTAAGTTTTCTCCTAGTATTCATATTTTTCAAGATTCTTCGAAAAGAAAAGATGGCTACACATGAAAAGATTCACCTGCTAGCATAATAATTACACTTGTTTCGTTGATCCGCAATTTAAAATTGAAAAGGAAAAACGAACTACTTTTTCTGAACCATCCTCTTTATATCGCCACTTTATATTTTTTTTTTCTCCAATACGTTCGACCTTCAAATTTAGTGTGTAAATACGATCATCTATCTCACTCCCAATAAGTATTAAATTCTAAACAAAACATTTGTGTTTAGATGTCTGAATTYAAAATCGCACATCCTTCTCTTTTCTGCGTCTTGCTTCTCTCGCTTTTTGTAACGTCCACTCGAAGAGTCGAATGATAAAAACGACTTGACATAAACACCGTCTTGGCTATCAGTTTTTGTTGTTGCGGCCATTTCAAAGTCAAGAGTGACTGTGTTTTGAAATAGGACAAGTAAAGAGTTTGTTGCTGTTAAAAGATTCACACTTAATTTTAGAATTCTCTATTTAGTTGGGGATCCGGAGAGGAAGTCTGTATGTACTAGAATCATAATTTTCGTCTGATACCTGCTCGTAGAGCAATGTGCGTTCTGTGATAAACGTCTGTGCTCTCAAGTATTTCTTCTAACTGTTTGTTTGTTTTTCGTTCCTTCCTCTTTCCTCTCCTTACTGTGATCTCGTGGATGCCATGTGGTATTTTCGTACAACCTAATACTGTTTTTGGAAAGTCCTATCAAAAACAATTTTTCGGGGAATCTTATTCTATTCTTATCACTTCATTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>351 287 218 48 43 34 19</canonical_bands>
                <polymorphic_bands>351 287 252 48 43 19</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>495 287 218</canonical_bands>
                <polymorphic_bands>713 287</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACTTTTTCTGAACCATCCTCTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCAAGTCGTTTTTATCATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACTTTTTCTGAACCATCCTCTTTATATCGCCACTTTATATTTTTTTTTTCTCCAATACGTTCGACCTTCAAATTTAGTGTGTAAATACGATCATCTATCTCACTCCCAATAAGTATTAAATTCTAAACAAAACATTTGTGTTTAGATGTCTGAATTCAAAATCGCACATCCTTCTCTTTTCTGCGTCTTGCTTCTCTCGCTTTTTGTAACGTCCACTCGAAGAGTCGAATGATAAAAACGACTTGACAT</canonical_amplicon>
		<polymorphic_amplicon>TACTTTTTCTGAACCATCCTCTTTATATCGCCACTTTATATTTTTTTTTTCTCCAATACGTTCGACCTTCAAATTTAGTGTGTAAATACGATCATCTATCTCACTCCCAATAAGTATTAAATTCTAAACAAAACATTTGTGTTTAGATGTCTGAATTYAAAATCGCACATCCTTCTCTTTTCTGCGTCTTGCTTCTCTCGCTTTTTGTAACGTCCACTCGAAGAGTCGAATGATAAAAACGACTTGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb146</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>738865</contig_pos>
        <strand>+</strand>
        <context>TGTTTCGTTG[A/G]TCCGCAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACACATGAAAAGATTCACCTGCTAGCATAATAATTACACTTGTTTCGTTG</left_flank>
        <right_flank>TCCGCAATTTAAAATTGAAAAGGAAAAACGAACTACTTTTTCTGAACCAT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTATGAATGGAGGATCCTGAACTCCAAACCATGAAATTATAGTTCGATCAAGGTGCATCTACCCCCTCGCTTTTGTTTTTTCTATTTCCTTCTCTCTTCCTCTTATTTTACGAGTGTCTCCATCTAACCTCGTGATCGCCACTGATTGCCGAAAGTGCAAAGAACGATCACAATTGTAACATACAATCGGCGTCTGGTTCTGTGATGTTCAGCAGTCTGTGATATTTTTACAAATTTTTGTCTTCCTTGTGAATTTTTCTAGTTTGAATTACGATTTCATTCTGAACCATTTCGAAAAAGATGTGAAACACTGGAGCAAGTAGATGTATAGTTTTAATTTTAAACTTAATATGCATGATTTCTAAATACCACGGTATTCTAATATTTCATCTAAGTTTTCTCCTAGTATTCATATTTTTCAAGATTCTTCGAAAAGAAAAGATGGCTACACATGAAAAGATTCACCTGCTAGCATAATAATTACACTTGTTTCGTTGATCCGCAATTTAAAATTGAAAAGGAAAAACGAACTACTTTTTCTGAACCATCCTCTTTATATCGCCACTTTATATTTTTTTTTTCTCCAATACGTTCGACCTTCAAATTTAGTGTGTAAATACGATCATCTATCTCACTCCCAATAAGTATTAAATTCTAAACAAAACATTTGTGTTTAGATGTCTGAATTCAAAATCGCACATCCTTCTCTTTTCTGCGTCTTGCTTCTCTCGCTTTTTGTAACGTCCACTCGAAGAGTCGAATGATAAAAACGACTTGACATAAACACCGTCTTGGCTATCAGTTTTTGTTGTTGCGGCCATTTCAAAGTCAAGAGTGACTGTGTTTTGAAATAGGACAAGTAAAGAGTTTGTTGCTGTTAAAAGATTCACACTTAATTTTAGAATTCTCTATTTAGTTGGGGATCCGGAGAGGAAGTCTGTATGTACTAGAATCATAATTTTCGTCTGATACCTGCTCGTAGAGCAATGTGCGTTCTG</canonical>
            <polymorphic>GATTATGAATGGAGGATCCTGAACTCCAAACCATGAAATTATAGTTCGATCAAGGTGCATCTACCCCCTCGCTTTTGTTTTTTCTATTTCCTTCTCTCTTCCTCTTATTTTACGAGTGTCTCCATCTAACCTCGTGATCGCCACTGATTGCCGAAAGTGCAAAGAACGATCACAATTGTAACATACAATCGGCGTCTGGTTCTGTGATGTTCAGCAGTCTGTGATATTTTTACAAATTTTTGTCTTCCTTGTGAATTTTTCTAGTTTGAATTACGATTTCATTCTGAACCATTTCGAAAAAGATGTGAAACACTGGAGCAAGTAGATGTATAGTTTTAATTTTAAACTTAATATGCATGATTTCTAAATACCACGGTATTCTAATATTTCATCTAAGTTTTCTCCTAGTATTCATATTTTTCAAGATTCTTCGAAAAGAAAAGATGGCTACACATGAAAAGATTCACCTGCTAGCATAATAATTACACTTGTTTCGTTGRTCCGCAATTTAAAATTGAAAAGGAAAAACGAACTACTTTTTCTGAACCATCCTCTTTATATCGCCACTTTATATTTTTTTTTTCTCCAATACGTTCGACCTTCAAATTTAGTGTGTAAATACGATCATCTATCTCACTCCCAATAAGTATTAAATTCTAAACAAAACATTTGTGTTTAGATGTCTGAATTCAAAATCGCACATCCTTCTCTTTTCTGCGTCTTGCTTCTCTCGCTTTTTGTAACGTCCACTCGAAGAGTCGAATGATAAAAACGACTTGACATAAACACCGTCTTGGCTATCAGTTTTTGTTGTTGCGGCCATTTCAAAGTCAAGAGTGACTGTGTTTTGAAATAGGACAAGTAAAGAGTTTGTTGCTGTTAAAAGATTCACACTTAATTTTAGAATTCTCTATTTAGTTGGGGATCCGGAGAGGAAGTCTGTATGTACTAGAATCATAATTTTCGTCTGATACCTGCTCGTAGAGCAATGTGCGTTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>331 301 124 88 77 33 32 14</canonical_bands>
                <polymorphic_bands>455 301 88 77 33 32 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACACTGGAGCAAGTAGATGTAT</pcr_primer_p1>
		<pcr_primer_p2>AGAGGATGGTTCAGAAAAAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AACACTGGAGCAAGTAGATGTATAGTTTTAATTTTAAACTTAATATGCATGATTTCTAAATACCACGGTATTCTAATATTTCATCTAAGTTTTCTCCTAGTATTCATATTTTTCAAGATTCTTCGAAAAGAAAAGATGGCTACACATGAAAAGATTCACCTGCTAGCATAATAATTACACTTGTTTCGTTGATCCGCAATTTAAAATTGAAAAGGAAAAACGAACTACTTTTTCTGAACCATCCTCT</canonical_amplicon>
		<polymorphic_amplicon>AACACTGGAGCAAGTAGATGTATAGTTTTAATTTTAAACTTAATATGCATGATTTCTAAATACCACGGTATTCTAATATTTCATCTAAGTTTTCTCCTAGTATTCATATTTTTCAAGATTCTTCGAAAAGAAAAGATGGCTACACATGAAAAGATTCACCTGCTAGCATAATAATTACACTTGTTTCGTTGRTCCGCAATTTAAAATTGAAAAGGAAAAACGAACTACTTTTTCTGAACCATCCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb147</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>768922</contig_pos>
        <strand>+</strand>
        <context>GAAAATATTT[A/T]ATATCAGCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTTCGTCTTCAAAAAGGGTCAGTGTATACATTGGAATATGAAAATATTT</left_flank>
        <right_flank>ATATCAGCTGACTAGGGAGGAGATATCTTGTTGATTAGGGATCGGCGTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTAAAAATTTTCAGGTGAAAGATATTCTTGCAGAAAAGTCAGAATGCACCTGTGAAGAATTTCTTGATGATTTTAGAAAATACATAACATTTCAGGTGACTCAAAATGTTAGGACCTTTAAATAATTGTGTTTTCTATAAATGCGTCGATTTCAATTTCGAATAAACAAAACTTAAAATCAGTGGGATCAAATCAACTATGTGATAATTTCTATTTCCTTGTAAACCCAATCATTTTCAGGATCTCTAGAAGTTTTTTTGCACAAACCAGGAAACTATCATACTTGAAAAATACTTTGATCTAAATGGCATATCACACATCATAATTTACTTTTGTTTACATTTTTCAAAGAAATTGAACTTTGATTAAAAACTAGAGTGTCCTTTGAACGTTCTTGGGATACCGTTGTGATCAGATATAAAACATCCCAGATACCGGTTCATTCATCTTTCGTCTTCAAAAAGGGTCAGTGTATACATTGGAATATGAAAATATTTAATATCAGCTGACTAGGGAGGAGATATCTTGTTGATTAGGGATCGGCGTCACATGGGAATGTGTGTCTGTTTATCTGTTTATCCCGCCCGTGTCTCGTTATTTGCATGTGGGTCTTTGTGAACAATAGATAAAAATGGTAAAGGGACCATTTAAAAACTTACCTGATAAGCTTCACTGATCGGACCTTTAAATCTCCGTTCCTTCACTTTTTTCTTATTCACTCGATACACAATCATCAATATCTGAAAATTTCTGAAACTTTCAGAACATTTAAAAAATAACGCATACCAAGAACGAAACCACAGCAGCTCCTAGATACAAAACGACATTTATCTCACGACCTTTTTCGAAGTTGTACTTGGAATACAGTTGCAGTAGTGAATAAGGATACTGAAAATTAGATTTTTTGGTAACGAAATTTCTGATATTGTGCTTTTGAAAAATGAGTTCTAGAAAGGGACCGTATTTGCTCTAATAGAAGCCCACGAACACTTTGAGCT</canonical>
            <polymorphic>AGTTAAAAATTTTCAGGTGAAAGATATTCTTGCAGAAAAGTCAGAATGCACCTGTGAAGAATTTCTTGATGATTTTAGAAAATACATAACATTTCAGGTGACTCAAAATGTTAGGACCTTTAAATAATTGTGTTTTCTATAAATGCGTCGATTTCAATTTCGAATAAACAAAACTTAAAATCAGTGGGATCAAATCAACTATGTGATAATTTCTATTTCCTTGTAAACCCAATCATTTTCAGGATCTCTAGAAGTTTTTTTGCACAAACCAGGAAACTATCATACTTGAAAAATACTTTGATCTAAATGGCATATCACACATCATAATTTACTTTTGTTTACATTTTTCAAAGAAATTGAACTTTGATTAAAAACTAGAGTGTCCTTTGAACGTTCTTGGGATACCGTTGTGATCAGATATAAAACATCCCAGATACCGGTTCATTCATCTTTCGTCTTCAAAAAGGGTCAGTGTATACATTGGAATATGAAAATATTTWATATCAGCTGACTAGGGAGGAGATATCTTGTTGATTAGGGATCGGCGTCACATGGGAATGTGTGTCTGTTTATCTGTTTATCCCGCCCGTGTCTCGTTATTTGCATGTGGGTCTTTGTGAACAATAGATAAAAATGGTAAAGGGACCATTTAAAAACTTACCTGATAAGCTTCACTGATCGGACCTTTAAATCTCCGTTCCTTCACTTTTTTCTTATTCACTCGATACACAATCATCAATATCTGAAAATTTCTGAAACTTTCAGAACATTTAAAAAATAACGCATACCAAGAACGAAACCACAGCAGCTCCTAGATACAAAACGACATTTATCTCACGACCTTTTTCGAAGTTGTACTTGGAATACAGTTGCAGTAGTGAATAAGGATACTGAAAATTAGATTTTTTGGTAACGAAATTTCTGATATTGTGCTTTTGAAAAATGAGTTCTAGAAAGGGACCGTATTTGCTCTAATAGAAGCCCACGAACACTTTGAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>229 193 152 130 117 84 55 37 3</canonical_bands>
                <polymorphic_bands>282 229 193 117 84 55 37 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACATTTTTCAAAGAAATTGAACT</pcr_primer_p1>
		<pcr_primer_p2>GGGATAAACAGATAAACAGACAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TACATTTTTCAAAGAAATTGAACTTTGATTAAAAACTAGAGTGTCCTTTGAACGTTCTTGGGATACCGTTGTGATCAGATATAAAACATCCCAGATACCGGTTCATTCATCTTTCGTCTTCAAAAAGGGTCAGTGTATACATTGGAATATGAAAATATTTAATATCAGCTGACTAGGGAGGAGATATCTTGTTGATTAGGGATCGGCGTCACATGGGAATGTGTGTCTGTTTATCTGTTTATCCC</canonical_amplicon>
		<polymorphic_amplicon>TACATTTTTCAAAGAAATTGAACTTTGATTAAAAACTAGAGTGTCCTTTGAACGTTCTTGGGATACCGTTGTGATCAGATATAAAACATCCCAGATACCGGTTCATTCATCTTTCGTCTTCAAAAAGGGTCAGTGTATACATTGGAATATGAAAATATTTWATATCAGCTGACTAGGGAGGAGATATCTTGTTGATTAGGGATCGGCGTCACATGGGAATGTGTGTCTGTTTATCTGTTTATCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb148</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>785851</contig_pos>
        <strand>+</strand>
        <context>AGCCAATGAC[A/G]AGAGTCCAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTTGTAGGGTTCTCACGAAGAATATGTGATAGGAACAGAAGCCAATGAC</left_flank>
        <right_flank>AGAGTCCAGAAACAGAGAGCTGTTACTTTTACATAGAAATGACGTCGGGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAATGAGATGCACTAGATTTCAATCACAGAGCTCTGGGCGGAGACTCATCTGGATTGTTAGAGCTCCACATTGTTCTAATTGCCCTCCCACAAAATGATTATCAATTTAAAAAATTTTTATTGTAATAAATCTAAACAATTATTAATAAGAAGTAAATACCCGATTGTATCATTTGAATGAGTCTCTCAAAAGTGTGTCAGATGTGCGGGTGCCAGAACAAAAAAACGAATGGAATCGACTAGGACGAGGTAGATTGGAATGATTGATTTAAAATTAGACGGATTACGATGACGAGGATCTCGCTTCATCAGAAGTCTGCCATTTGCCAATGATGAATTTGTCTATTCCACCGTATTTCCAGTTTAGGAACGTACTTATGATGAAGAAGTATAAGAAACCAAGCTGAATTAGAGGATATGATTCGGATTGAAAGAATTAAAAAACTTACTTGTAGGGTTCTCACGAAGAATATGTGATAGGAACAGAAGCCAATGACGAGAGTCCAGAAACAGAGAGCTGTTACTTTTACATAGAAATGACGTCGGGGTTCTTTCCACTGAAAAAAAAGCACAAATCTTTAATTGCAAGCCCATAAAAACTTACACTTCTCCAGACCCCATCGCCTCTTTCAACTGGAAACTGCCTATTGATTGGTTGCTCCTCACTGTAGAATTGGTGTAGTAATTGTTCCTTCAATGTCCATCGGCTGAAAAAAAGAAGTTCGAAAACCAAATGAAAGATAGTTCGACTACTCTGTCAGCCATCGACTAGCATCCTGTTCGTTCAATGGGACTTGAGAAATCGGAATCTTTCGAATATGGAAATGAACTTCTCGTGGGCTTGCTCCTTTCACAACAAGATCAACCTGGAAATGAGCAATAATGAAAGAACAGAAGGGTGTTCATACCTCTGATTGCACAATATTGTAGGGATATGCAATGGTGATGTCATAGATGTAATCCACATATTCTCCTGGAAGATGTTTTTTAATTTTCAG</canonical>
            <polymorphic>AAGAATGAGATGCACTAGATTTCAATCACAGAGCTCTGGGCGGAGACTCATCTGGATTGTTAGAGCTCCACATTGTTCTAATTGCCCTCCCACAAAATGATTATCAATTTAAAAAATTTTTATTGTAATAAATCTAAACAATTATTAATAAGAAGTAAATACCCGATTGTATCATTTGAATGAGTCTCTCAAAAGTGTGTCAGATGTGCGGGTGCCAGAACAAAAAAACGAATGGAATCGACTAGGACGAGGTAGATTGGAATGATTGATTTAAAATTAGACGGATTACGATGACGAGGATCTCGCTTCATCAGAAGTCTGCCATTTGCCAATGATGAATTTGTCTATTCCACCGTATTTCCAGTTTAGGAACGTACTTATGATGAAGAAGTATAAGAAACCAAGCTGAATTAGAGGATATGATTCGGATTGAAAGAATTAAAAAACTTACTTGTAGGGTTCTCACGAAGAATATGTGATAGGAACAGAAGCCAATGACRAGAGTCCAGAAACAGAGAGCTGTTACTTTTACATAGAAATGACGTCGGGGTTCTTTCCACTGAAAAAAAAGCACAAATCTTTAATTGCAAGCCCATAAAAACTTACACTTCTCCAGACCCCATCGCCTCTTTCAACTGGAAACTGCCTATTGATTGGTTGCTCCTCACTGTAGAATTGGTGTAGTAATTGTTCCTTCAATGTCCATCGGCTGAAAAAAAGAAGTTCGAAAACCAAATGAAAGATAGTTCGACTACTCTGTCAGCCATCGACTAGCATCCTGTTCGTTCAATGGGACTTGAGAAATCGGAATCTTTCGAATATGGAAATGAACTTCTCGTGGGCTTGCTCCTTTCACAACAAGATCAACCTGGAAATGAGCAATAATGAAAGAACAGAAGGGTGTTCATACCTCTGATTGCACAATATTGTAGGGATATGCAATGGTGATGTCATAGATGTAATCCACATATTCTCCTGGAAGATGTTTTTTAATTTTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAACGTACTTATGATGAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TGGAGAAGTGTAAGTTTTTATGG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGAACGTACTTATGATGAAGAAGTATAAGAAACCAAGCTGAATTAGAGGATATGATTCGGATTGAAAGAATTAAAAAACTTACTTGTAGGGTTCTCACGAAGAATATGTGATAGGAACAGAAGCCAATGACGAGAGTCCAGAAACAGAGAGCTGTTACTTTTACATAGAAATGACGTCGGGGTTCTTTCCACTGAAAAAAAAGCACAAATCTTTAATTGCAAGCCCATAAAAACTTACACTTCTCCA</canonical_amplicon>
		<polymorphic_amplicon>GGAACGTACTTATGATGAAGAAGTATAAGAAACCAAGCTGAATTAGAGGATATGATTCGGATTGAAAGAATTAAAAAACTTACTTGTAGGGTTCTCACGAAGAATATGTGATAGGAACAGAAGCCAATGACRAGAGTCCAGAAACAGAGAGCTGTTACTTTTACATAGAAATGACGTCGGGGTTCTTTCCACTGAAAAAAAAGCACAAATCTTTAATTGCAAGCCCATAAAAACTTACACTTCTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb149</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>785830</contig_pos>
        <strand>+</strand>
        <context>AGAATATGTG[A/G]TAGGAACAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGAAAGAATTAAAAAACTTACTTGTAGGGTTCTCACGAAGAATATGTG</left_flank>
        <right_flank>TAGGAACAGAAGCCAATGACGAGAGTCCAGAAACAGAGAGCTGTTACTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTACATGCATCGAATTTATAAGAATGAGATGCACTAGATTTCAATCACAGAGCTCTGGGCGGAGACTCATCTGGATTGTTAGAGCTCCACATTGTTCTAATTGCCCTCCCACAAAATGATTATCAATTTAAAAAATTTTTATTGTAATAAATCTAAACAATTATTAATAAGAAGTAAATACCCGATTGTATCATTTGAATGAGTCTCTCAAAAGTGTGTCAGATGTGCGGGTGCCAGAACAAAAAAACGAATGGAATCGACTAGGACGAGGTAGATTGGAATGATTGATTTAAAATTAGACGGATTACGATGACGAGGATCTCGCTTCATCAGAAGTCTGCCATTTGCCAATGATGAATTTGTCTATTCCACCGTATTTCCAGTTTAGGAACGTACTTATGATGAAGAAGTATAAGAAACCAAGCTGAATTAGAGGATATGATTCGGATTGAAAGAATTAAAAAACTTACTTGTAGGGTTCTCACGAAGAATATGTGATAGGAACAGAAGCCAATGACGAGAGTCCAGAAACAGAGAGCTGTTACTTTTACATAGAAATGACGTCGGGGTTCTTTCCACTGAAAAAAAAGCACAAATCTTTAATTGCAAGCCCATAAAAACTTACACTTCTCCAGACCCCATCGCCTCTTTCAACTGGAAACTGCCTATTGATTGGTTGCTCCTCACTGTAGAATTGGTGTAGTAATTGTTCCTTCAATGTCCATCGGCTGAAAAAAAGAAGTTCGAAAACCAAATGAAAGATAGTTCGACTACTCTGTCAGCCATCGACTAGCATCCTGTTCGTTCAATGGGACTTGAGAAATCGGAATCTTTCGAATATGGAAATGAACTTCTCGTGGGCTTGCTCCTTTCACAACAAGATCAACCTGGAAATGAGCAATAATGAAAGAACAGAAGGGTGTTCATACCTCTGATTGCACAATATTGTAGGGATATGCAATGGTGATGTCATAGATGTAATCCACATATTCTCCTGG</canonical>
            <polymorphic>AATTACATGCATCGAATTTATAAGAATGAGATGCACTAGATTTCAATCACAGAGCTCTGGGCGGAGACTCATCTGGATTGTTAGAGCTCCACATTGTTCTAATTGCCCTCCCACAAAATGATTATCAATTTAAAAAATTTTTATTGTAATAAATCTAAACAATTATTAATAAGAAGTAAATACCCGATTGTATCATTTGAATGAGTCTCTCAAAAGTGTGTCAGATGTGCGGGTGCCAGAACAAAAAAACGAATGGAATCGACTAGGACGAGGTAGATTGGAATGATTGATTTAAAATTAGACGGATTACGATGACGAGGATCTCGCTTCATCAGAAGTCTGCCATTTGCCAATGATGAATTTGTCTATTCCACCGTATTTCCAGTTTAGGAACGTACTTATGATGAAGAAGTATAAGAAACCAAGCTGAATTAGAGGATATGATTCGGATTGAAAGAATTAAAAAACTTACTTGTAGGGTTCTCACGAAGAATATGTGRTAGGAACAGAAGCCAATGACGAGAGTCCAGAAACAGAGAGCTGTTACTTTTACATAGAAATGACGTCGGGGTTCTTTCCACTGAAAAAAAAGCACAAATCTTTAATTGCAAGCCCATAAAAACTTACACTTCTCCAGACCCCATCGCCTCTTTCAACTGGAAACTGCCTATTGATTGGTTGCTCCTCACTGTAGAATTGGTGTAGTAATTGTTCCTTCAATGTCCATCGGCTGAAAAAAAGAAGTTCGAAAACCAAATGAAAGATAGTTCGACTACTCTGTCAGCCATCGACTAGCATCCTGTTCGTTCAATGGGACTTGAGAAATCGGAATCTTTCGAATATGGAAATGAACTTCTCGTGGGCTTGCTCCTTTCACAACAAGATCAACCTGGAAATGAGCAATAATGAAAGAACAGAAGGGTGTTCATACCTCTGATTGCACAATATTGTAGGGATATGCAATGGTGATGTCATAGATGTAATCCACATATTCTCCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAACGTACTTATGATGAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TGGAGAAGTGTAAGTTTTTATGG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGAACGTACTTATGATGAAGAAGTATAAGAAACCAAGCTGAATTAGAGGATATGATTCGGATTGAAAGAATTAAAAAACTTACTTGTAGGGTTCTCACGAAGAATATGTGATAGGAACAGAAGCCAATGACGAGAGTCCAGAAACAGAGAGCTGTTACTTTTACATAGAAATGACGTCGGGGTTCTTTCCACTGAAAAAAAAGCACAAATCTTTAATTGCAAGCCCATAAAAACTTACACTTCTCCA</canonical_amplicon>
		<polymorphic_amplicon>GGAACGTACTTATGATGAAGAAGTATAAGAAACCAAGCTGAATTAGAGGATATGATTCGGATTGAAAGAATTAAAAAACTTACTTGTAGGGTTCTCACGAAGAATATGTGRTAGGAACAGAAGCCAATGACGAGAGTCCAGAAACAGAGAGCTGTTACTTTTACATAGAAATGACGTCGGGGTTCTTTCCACTGAAAAAAAAGCACAAATCTTTAATTGCAAGCCCATAAAAACTTACACTTCTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb150</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>810533</contig_pos>
        <strand>+</strand>
        <context>TCATCATGGG[C/T]YTCCGATGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGATGAATCAGATGGATCAACGAACACCAATTTCAGAAGTTCATCATGGG</left_flank>
        <right_flank>CTCCGATGATTCCAAATCTTCATTGATAACTTCAGGTTTGACTCGTCTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTTGACAGGAACTGAGAAAAATTAAGTTAAAAGTTAGGGGGCATTGGTTTTACAGCGGTTGTCCTAAAGTACCTCTAATGAAAATTTTTGGATTTTCTTACATTTTGAAGACGTAGACGACATATCCAAGCACCCGGCTTTTTCTCTGATACAGTTGACCAATAATTTTTTGAGTTTCCTTGTAAGTGAGAAATCAAGTGTTGCCAATCCATTGTTTTGCTCACGGAGTTTCTGAAAGTACGTAAACACTTGGACAGACATTTGCGGAACACTTACCTGCAACATGAGTCCTAGGGGGTCTGATTTGGGGATGAGAAGAGAGTAAGATCCTTTGATAACAAAATAATCTGGTTTGATCTCTATTTCCAACAATTCTTCGTCACTTGGTCTTATTGAGCGGTTTCGGGGAAGTGACAAACTTCTTCGGGAATCAGATTTAGAAATAGATGATGAATCAGATGGATCAACGAACACCAATTTCAGAAGTTCATCATGGGCCTCCGATGATTCCAAATCTTCATTGATAACTTCAGGTTTGACTCGTCTATCAATGGAAGTGTCTGTGCGAGTACGGTAGTATGAATGCAATTTCTCATTTGACTTTTTCCGATCGATAGAAGTATCAGTGTGGTCTGAAAAGATAGGATTAATTTCTCTAGCTAAACAATAATCCAACCTCGAAGTGATTTTGTACTACTGAAAAATGCTGCCTCGTCCATGCTCTTTCCAAGAATATCGTCCACAAATTGACTCACATCCAAATTCTCTGGATCAACGTCCGAATCACTGGATCCAATTTCTTCTTGGTGAATAGAAGTAATGTAGTAGTCGTCGTAGTTGTTTTTTCTGAAAGTAAATACAAATGTGAATGAGCTATTGAATTCAAAAGATCTTACTCTTTATCAGGTTCCTGGGCTGCGGCAGAAGTAGTTGGTTGTGAATCGAAAATTCCCTTGAATGCTTCATCTATGACATGATCTGTGATCCTCGTAGACCTT</canonical>
            <polymorphic>TCTTTGACAGGAACTGAGAAAAATTAAGTTAAAAGTTAGGGGGCATTGGTTTTACAGCGGTTGTCCTAAAGTACCTCTAATGAAAATTTTTGGATTTTCTTACATTTTGAAGACGTAGACGACATATCCAAGCACCCGGCTTTTTCTCTGATACAGTTGACCAATAATTTTTTGAGTTTCCTTGTAAGTGAGAAATCAAGTGTTGCCAATCCATTGTTTTGCTCACGGAGTTTCTGAAAGTACGTAAACACTTGGACAGACATTTGCGGAACACTTACCTGCAACATGAGTCCTAGGGGGTCTGATTTGGGGATGAGAAGAGAGTAAGATCCTTTGATAACAAAATAATCTGGTTTGATCTCTATTTCCAACAATTCTTCGTCACTTGGTCTTATTGAGCGGTTTCGGGGAAGTGACAAACTTCTTCGGGAATCAGATTTAGAAATAGATGATGAATCAGATGGATCAACGAACACCAATTTCAGAAGTTCATCATGGGYCTCCGATGATTCCAAATCTTCATTGATAACTTCAGGTTTGACTCGTCTATCAATGGAAGTGTCTGTGCGAGTACGGTAGTATGAATGCAATTTCTCATTTGACTTTTTCCGATCGATAGAAGTATCAGTGTGGTCTGAAAAGATAGGATTAATTTCTCTAGCTAAACAATAATCCAACCTCGAAGTGATTTTGTACTACTGAAAAATGCTGCCTCGTCCATGCTCTTTCCAAGAATATCGTCCACAAATTGACTCACATCCAAATTCTCTGGATCAACGTCCGAATCACTGGATCCAATTTCTTCTTGGTGAATAGAAGTAATGTAGTAGTCGTCGTAGTTGTTTTTTCTGAAAGTAAATACAAATGTGAATGAGCTATTGAATTCAAAAGATCTTACTCTTTATCAGGTTCCTGGGCTGCGGCAGAAGTAGTTGGTTGTGAATCGAAAATTCCCTTGAATGCTTCATCTATGACATGATCTGTGATCCTCGTAGACCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>360 214 162 139 83 42</canonical_bands>
                <polymorphic_bands>522 214 139 83 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGATCTCTATTTCCAACAATTC</pcr_primer_p1>
		<pcr_primer_p2>AAATGAGAAATTGCATTCATACT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTGATCTCTATTTCCAACAATTCTTCGTCACTTGGTCTTATTGAGCGGTTTCGGGGAAGTGACAAACTTCTTCGGGAATCAGATTTAGAAATAGATGATGAATCAGATGGATCAACGAACACCAATTTCAGAAGTTCATCATGGGCCTCCGATGATTCCAAATCTTCATTGATAACTTCAGGTTTGACTCGTCTATCAATGGAAGTGTCTGTGCGAGTACGGTAGTATGAATGCAATTTCTCATTT</canonical_amplicon>
		<polymorphic_amplicon>TTGATCTCTATTTCCAACAATTCTTCGTCACTTGGTCTTATTGAGCGGTTTCGGGGAAGTGACAAACTTCTTCGGGAATCAGATTTAGAAATAGATGATGAATCAGATGGATCAACGAACACCAATTTCAGAAGTTCATCATGGGYCTCCGATGATTCCAAATCTTCATTGATAACTTCAGGTTTGACTCGTCTATCAATGGAAGTGTCTGTGCGAGTACGGTAGTATGAATGCAATTTCTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb151</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>810534</contig_pos>
        <strand>+</strand>
        <context>CATCATGGGY[C/T]TCCGATGATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATGAATCAGATGGATCAACGAACACCAATTTCAGAAGTTCATCATGGGC</left_flank>
        <right_flank>TCCGATGATTCCAAATCTTCATTGATAACTTCAGGTTTGACTCGTCTATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTGACAGGAACTGAGAAAAATTAAGTTAAAAGTTAGGGGGCATTGGTTTTACAGCGGTTGTCCTAAAGTACCTCTAATGAAAATTTTTGGATTTTCTTACATTTTGAAGACGTAGACGACATATCCAAGCACCCGGCTTTTTCTCTGATACAGTTGACCAATAATTTTTTGAGTTTCCTTGTAAGTGAGAAATCAAGTGTTGCCAATCCATTGTTTTGCTCACGGAGTTTCTGAAAGTACGTAAACACTTGGACAGACATTTGCGGAACACTTACCTGCAACATGAGTCCTAGGGGGTCTGATTTGGGGATGAGAAGAGAGTAAGATCCTTTGATAACAAAATAATCTGGTTTGATCTCTATTTCCAACAATTCTTCGTCACTTGGTCTTATTGAGCGGTTTCGGGGAAGTGACAAACTTCTTCGGGAATCAGATTTAGAAATAGATGATGAATCAGATGGATCAACGAACACCAATTTCAGAAGTTCATCATGGGCCTCCGATGATTCCAAATCTTCATTGATAACTTCAGGTTTGACTCGTCTATCAATGGAAGTGTCTGTGCGAGTACGGTAGTATGAATGCAATTTCTCATTTGACTTTTTCCGATCGATAGAAGTATCAGTGTGGTCTGAAAAGATAGGATTAATTTCTCTAGCTAAACAATAATCCAACCTCGAAGTGATTTTGTACTACTGAAAAATGCTGCCTCGTCCATGCTCTTTCCAAGAATATCGTCCACAAATTGACTCACATCCAAATTCTCTGGATCAACGTCCGAATCACTGGATCCAATTTCTTCTTGGTGAATAGAAGTAATGTAGTAGTCGTCGTAGTTGTTTTTTCTGAAAGTAAATACAAATGTGAATGAGCTATTGAATTCAAAAGATCTTACTCTTTATCAGGTTCCTGGGCTGCGGCAGAAGTAGTTGGTTGTGAATCGAAAATTCCCTTGAATGCTTCATCTATGACATGATCTGTGATCCTCGTAGACCTTC</canonical>
            <polymorphic>CTTTGACAGGAACTGAGAAAAATTAAGTTAAAAGTTAGGGGGCATTGGTTTTACAGCGGTTGTCCTAAAGTACCTCTAATGAAAATTTTTGGATTTTCTTACATTTTGAAGACGTAGACGACATATCCAAGCACCCGGCTTTTTCTCTGATACAGTTGACCAATAATTTTTTGAGTTTCCTTGTAAGTGAGAAATCAAGTGTTGCCAATCCATTGTTTTGCTCACGGAGTTTCTGAAAGTACGTAAACACTTGGACAGACATTTGCGGAACACTTACCTGCAACATGAGTCCTAGGGGGTCTGATTTGGGGATGAGAAGAGAGTAAGATCCTTTGATAACAAAATAATCTGGTTTGATCTCTATTTCCAACAATTCTTCGTCACTTGGTCTTATTGAGCGGTTTCGGGGAAGTGACAAACTTCTTCGGGAATCAGATTTAGAAATAGATGATGAATCAGATGGATCAACGAACACCAATTTCAGAAGTTCATCATGGGCYTCCGATGATTCCAAATCTTCATTGATAACTTCAGGTTTGACTCGTCTATCAATGGAAGTGTCTGTGCGAGTACGGTAGTATGAATGCAATTTCTCATTTGACTTTTTCCGATCGATAGAAGTATCAGTGTGGTCTGAAAAGATAGGATTAATTTCTCTAGCTAAACAATAATCCAACCTCGAAGTGATTTTGTACTACTGAAAAATGCTGCCTCGTCCATGCTCTTTCCAAGAATATCGTCCACAAATTGACTCACATCCAAATTCTCTGGATCAACGTCCGAATCACTGGATCCAATTTCTTCTTGGTGAATAGAAGTAATGTAGTAGTCGTCGTAGTTGTTTTTTCTGAAAGTAAATACAAATGTGAATGAGCTATTGAATTCAAAAGATCTTACTCTTTATCAGGTTCCTGGGCTGCGGCAGAAGTAGTTGGTTGTGAATCGAAAATTCCCTTGAATGCTTCATCTATGACATGATCTGTGATCCTCGTAGACCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>360 214 162 138 84 42</canonical_bands>
                <polymorphic_bands>522 214 138 84 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGATCTCTATTTCCAACAATTC</pcr_primer_p1>
		<pcr_primer_p2>AAATGAGAAATTGCATTCATACT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTGATCTCTATTTCCAACAATTCTTCGTCACTTGGTCTTATTGAGCGGTTTCGGGGAAGTGACAAACTTCTTCGGGAATCAGATTTAGAAATAGATGATGAATCAGATGGATCAACGAACACCAATTTCAGAAGTTCATCATGGGCCTCCGATGATTCCAAATCTTCATTGATAACTTCAGGTTTGACTCGTCTATCAATGGAAGTGTCTGTGCGAGTACGGTAGTATGAATGCAATTTCTCATTT</canonical_amplicon>
		<polymorphic_amplicon>TTGATCTCTATTTCCAACAATTCTTCGTCACTTGGTCTTATTGAGCGGTTTCGGGGAAGTGACAAACTTCTTCGGGAATCAGATTTAGAAATAGATGATGAATCAGATGGATCAACGAACACCAATTTCAGAAGTTCATCATGGGCYTCCGATGATTCCAAATCTTCATTGATAACTTCAGGTTTGACTCGTCTATCAATGGAAGTGTCTGTGCGAGTACGGTAGTATGAATGCAATTTCTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb152</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>810812</contig_pos>
        <strand>+</strand>
        <context>CTGGATCAAC[C/G]TCCGAATCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCAAGAATATCGTCCACAAATTGACTCACATCCAAATTCTCTGGATCAAC</left_flank>
        <right_flank>TCCGAATCACTGGATCCAATTTCTTCTTGGTGAATAGAAGTAATGTAGTA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCAACATGAGTCCTAGGGGGTCTGATTTGGGGATGAGAAGAGAGTAAGATCCTTTGATAACAAAATAATCTGGTTTGATCTCTATTTCCAACAATTCTTCGTCACTTGGTCTTATTGAGCGGTTTCGGGGAAGTGACAAACTTCTTCGGGAATCAGATTTAGAAATAGATGATGAATCAGATGGATCAACGAACACCAATTTCAGAAGTTCATCATGGGCCTCCGATGATTCCAAATCTTCATTGATAACTTCAGGTTTGACTCGTCTATCAATGGAAGTGTCTGTGCGAGTACGGTAGTATGAATGCAATTTCTCATTTGACTTTTTCCGATCGATAGAAGTATCAGTGTGGTCTGAAAAGATAGGATTAATTTCTCTAGCTAAACAATAATCCAACCTCGAAGTGATTTTGTACTACTGAAAAATGCTGCCTCGTCCATGCTCTTTCCAAGAATATCGTCCACAAATTGACTCACATCCAAATTCTCTGGATCAACGTCCGAATCACTGGATCCAATTTCTTCTTGGTGAATAGAAGTAATGTAGTAGTCGTCGTAGTTGTTTTTTCTGAAAGTAAATACAAATGTGAATGAGCTATTGAATTCAAAAGATCTTACTCTTTATCAGGTTCCTGGGCTGCGGCAGAAGTAGTTGGTTGTGAATCGAAAATTCCCTTGAATGCTTCATCTATGACATGATCTGTGATCCTCGTAGACCTTCTTCTCCCTCTGTCTCCACCCGACATCACTCCGCTATCCTCACTTCCAATAGTGTCCCATCCACTCCGATCTTCGTAGAAATTCGAGAATCTTCTGTTCTCATTGGTTGTAGAAGATACTGGACTGAATATTTCATCCATTGAAATATCAGCATCTTTCCATTGGTGAGTTGTTGTCACAGTTTCCGATACTTTTGGGGAAATGTAGTATGTTCGAGTAGATTGAAGCGGTGGTGATGATGTTGATGGAGCTGGTGCATGATCAGTTTGGATCGTCAAT</canonical>
            <polymorphic>TGCAACATGAGTCCTAGGGGGTCTGATTTGGGGATGAGAAGAGAGTAAGATCCTTTGATAACAAAATAATCTGGTTTGATCTCTATTTCCAACAATTCTTCGTCACTTGGTCTTATTGAGCGGTTTCGGGGAAGTGACAAACTTCTTCGGGAATCAGATTTAGAAATAGATGATGAATCAGATGGATCAACGAACACCAATTTCAGAAGTTCATCATGGGCCTCCGATGATTCCAAATCTTCATTGATAACTTCAGGTTTGACTCGTCTATCAATGGAAGTGTCTGTGCGAGTACGGTAGTATGAATGCAATTTCTCATTTGACTTTTTCCGATCGATAGAAGTATCAGTGTGGTCTGAAAAGATAGGATTAATTTCTCTAGCTAAACAATAATCCAACCTCGAAGTGATTTTGTACTACTGAAAAATGCTGCCTCGTCCATGCTCTTTCCAAGAATATCGTCCACAAATTGACTCACATCCAAATTCTCTGGATCAACSTCCGAATCACTGGATCCAATTTCTTCTTGGTGAATAGAAGTAATGTAGTAGTCGTCGTAGTTGTTTTTTCTGAAAGTAAATACAAATGTGAATGAGCTATTGAATTCAAAAGATCTTACTCTTTATCAGGTTCCTGGGCTGCGGCAGAAGTAGTTGGTTGTGAATCGAAAATTCCCTTGAATGCTTCATCTATGACATGATCTGTGATCCTCGTAGACCTTCTTCTCCCTCTGTCTCCACCCGACATCACTCCGCTATCCTCACTTCCAATAGTGTCCCATCCACTCCGATCTTCGTAGAAATTCGAGAATCTTCTGTTCTCATTGGTTGTAGAAGATACTGGACTGAATATTTCATCCATTGAAATATCAGCATCTTTCCATTGGTGAGTTGTTGTCACAGTTTCCGATACTTTTGGGGAAATGTAGTATGTTCGAGTAGATTGAAGCGGTGGTGATGATGTTGATGGAGCTGGTGCATGATCAGTTTGGATCGTCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTGTGGTCTGAAAAGATAGGAT</pcr_primer_p1>
		<pcr_primer_p2>GCTCATTCACATTTGTATTTACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTGTGGTCTGAAAAGATAGGATTAATTTCTCTAGCTAAACAATAATCCAACCTCGAAGTGATTTTGTACTACTGAAAAATGCTGCCTCGTCCATGCTCTTTCCAAGAATATCGTCCACAAATTGACTCACATCCAAATTCTCTGGATCAACGTCCGAATCACTGGATCCAATTTCTTCTTGGTGAATAGAAGTAATGTAGTAGTCGTCGTAGTTGTTTTTTCTGAAAGTAAATACAAATGTGAATGAGC</canonical_amplicon>
		<polymorphic_amplicon>AGTGTGGTCTGAAAAGATAGGATTAATTTCTCTAGCTAAACAATAATCCAACCTCGAAGTGATTTTGTACTACTGAAAAATGCTGCCTCGTCCATGCTCTTTCCAAGAATATCGTCCACAAATTGACTCACATCCAAATTCTCTGGATCAACSTCCGAATCACTGGATCCAATTTCTTCTTGGTGAATAGAAGTAATGTAGTAGTCGTCGTAGTTGTTTTTTCTGAAAGTAAATACAAATGTGAATGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb162</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>905651</contig_pos>
        <strand>+</strand>
        <context>GTGCACTACA[G/T]TAATCAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGTTATTCTTGACATCAATAACGACAAATGGAGGTGGTGGTGCACTACA</left_flank>
        <right_flank>TAATCAAAAACTGAACAGACAGGAAGAGAAGAAATGAGGTCAGCCAAGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGACCATGTCCATGTCAAAAGAAACCGCTTTTGTCTGTTATCAATGCGCTAAAACTTTGAGCTGTGAACGCGCAAACACTCATGAATTGTTGATTACTTATTCTGGGAACAATAACAGAAAAATTGAATGAATGGCGAGAAAGAAAAAGATTACTGTAGGGGGATTCCACCAAGAATCCGGCCTGTGACAGTAATCTTTTTGGCGGCGTCAATCAGGCATTTCCGTTAAGTGGATAGGCTCCACGTCACAGCTCTGTCACCTTCAATAGATGATTGCGTAATCGTTTTTTTTTTGGGGTTTTGAAGAGCTTTGGACAGGTGGTTCCGCTTTTTCAGAGGACCTGACCATCTGCAGAAGTGGAACAGGAATACAGTATGCCTTACGTCGTGAAAGTACTTGACGACGCATGACAGAATAGATGAAGACCGCAAAGAAGAAGAGACAAAAGAAGTTATTCTTGACATCAATAACGACAAATGGAGGTGGTGGTGCACTACATTAATCAAAAACTGAACAGACAGGAAGAGAAGAAATGAGGTCAGCCAAGAATGAAAAGATCGGACATGGAAGTTCCCAGAGACCTCAGCTACCGTTTACCATTCAATGAATATGAGTTTTATCACCGAGGTGTCAGGTGGGAAACCGAAACCGGTTATTTTGTTTGTATTGTTTCAGATGTAGTAGGAATCAAAAAACACAGTTTTTCTCCTGGGAAGCCGGATAGCGAATGCAAAGAGAAGTGTGAAAAATAGCACGTACGTGGGGAAATCGAAAAGAACCATGGAAAAAAGGGTTCTCGGGCGTCACCGGAAACTTCTAGTCAGAGATTGGTCAGGTTCCTGATAATACTGTTAAAGCCGACCAAACTTCTTCAAATTTAGGACTAGGTTCTGACCCAGTAGTATTTCAACTTTCAAATTTTGGCCAAAACCTGACTCCTGACTATGGCCTGTTTTTGGGCAACTTCCGACCTGGCCAATTACCCTCAACTTCTAACAA</canonical>
            <polymorphic>AGACCATGTCCATGTCAAAAGAAACCGCTTTTGTCTGTTATCAATGCGCTAAAACTTTGAGCTGTGAACGCGCAAACACTCATGAATTGTTGATTACTTATTCTGGGAACAATAACAGAAAAATTGAATGAATGGCGAGAAAGAAAAAGATTACTGTAGGGGGATTCCACCAAGAATCCGGCCTGTGACAGTAATCTTTTTGGCGGCGTCAATCAGGCATTTCCGTTAAGTGGATAGGCTCCACGTCACAGCTCTGTCACCTTCAATAGATGATTGCGTAATCGTTTTTTTTTTGGGGTTTTGAAGAGCTTTGGACAGGTGGTTCCGCTTTTTCAGAGGACCTGACCATCTGCAGAAGTGGAACAGGAATACAGTATGCCTTACGTCGTGAAAGTACTTGACGACGCATGACAGAATAGATGAAGACCGCAAAGAAGAAGAGACAAAAGAAGTTATTCTTGACATCAATAACGACAAATGGAGGTGGTGGTGCACTACAKTAATCAAAAACTGAACAGACAGGAAGAGAAGAAATGAGGTCAGCCAAGAATGAAAAGATCGGACATGGAAGTTCCCAGAGACCTCAGCTACCGTTTACCATTCAATGAATATGAGTTTTATCACCGAGGTGTCAGGTGGGAAACCGAAACCGGTTATTTTGTTTGTATTGTTTCAGATGTAGTAGGAATCAAAAAACACAGTTTTTCTCCTGGGAAGCCGGATAGCGAATGCAAAGAGAAGTGTGAAAAATAGCACGTACGTGGGGAAATCGAAAAGAACCATGGAAAAAAGGGTTCTCGGGCGTCACCGGAAACTTCTAGTCAGAGATTGGTCAGGTTCCTGATAATACTGTTAAAGCCGACCAAACTTCTTCAAATTTAGGACTAGGTTCTGACCCAGTAGTATTTCAACTTTCAAATTTTGGCCAAAACCTGACTCCTGACTATGGCCTGTTTTTGGGCAACTTCCGACCTGGCCAATTACCCTCAACTTCTAACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>353 274 226 147</canonical_bands>
                <polymorphic_bands>627 226 147</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAGAAGAAGAGACAAAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>CATCTGAAACAATACAAACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAGAAGAAGAGACAAAAGAAGTTATTCTTGACATCAATAACGACAAATGGAGGTGGTGGTGCACTACATTAATCAAAAACTGAACAGACAGGAAGAGAAGAAATGAGGTCAGCCAAGAATGAAAAGATCGGACATGGAAGTTCCCAGAGACCTCAGCTACCGTTTACCATTCAATGAATATGAGTTTTATCACCGAGGTGTCAGGTGGGAAACCGAAACCGGTTATTTTGTTTGTATTGTTTCAGATG</canonical_amplicon>
		<polymorphic_amplicon>CAAAGAAGAAGAGACAAAAGAAGTTATTCTTGACATCAATAACGACAAATGGAGGTGGTGGTGCACTACAKTAATCAAAAACTGAACAGACAGGAAGAGAAGAAATGAGGTCAGCCAAGAATGAAAAGATCGGACATGGAAGTTCCCAGAGACCTCAGCTACCGTTTACCATTCAATGAATATGAGTTTTATCACCGAGGTGTCAGGTGGGAAACCGAAACCGGTTATTTTGTTTGTATTGTTTCAGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb163</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>923201</contig_pos>
        <strand>+</strand>
        <context>TGATGACCCA[C/T]TGAATTTTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTACTTGAATACCATCAGGAATTCCTCCAGACTTTTGGTGATGACCCA</left_flank>
        <right_flank>TGAATTTTCAACGTAATCTACCGTGAAACCTATATTAGAAGAGCCCCCAG</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACTTCCTGAAAGCCACCCCCCCCCCCACCCCCAATTTTAATTTTGGGTCAAATTATCTCGATTCCTGTGAAAGATATCAAAAATTTGTAAACTGATAAATTGTGTACCATAACTATACCAACATTTTATCAGCTGACAAATTTGTGATATCTTTCACAGGAACAGAAAAATTTGAGCTCAAAGTTGAGAATATTATTCAAAAACTTTTTAAAAAATTTTCTTTCAGATTTCCTACAGTAGTAACCTCTTTGGGCTTGTAACAATAATTACCAGGATGAAATAGAATAGTTTGGTGCTGATTCAGATTTCTTACAATTAGGATCGTTATTTTCTCGGGGATACTGTATTTTTTGTCTCAAGTTATACTTTGAAAAATCATATTTTCGTGAAAACTCTTTCATCAAGCCAGGCCTCAGGCTACTACTCTTAGCTTGATATTTTCGACGAATCTTACTTGAATACCATCAGGAATTCCTCCAGACTTTTGGTGATGACCCACTGAATTTTCAACGTAATCTACCGTGAAACCTATATTAGAAGAGCCCCCAGGCTGACAAGTTTGAGCTAACTTTTCTTGGTCCTATGCAAGATATCAAAAATGTTTCAACTACCAAAATACTTCCGACATTATGACAAACAATTTATCAGTTAACCGCCTTTTCGTCTCTTTGACAGCAACCAAGAAAAATCGGCTCAAAGTTAAAACTTACAACTGATAGGGGGCCCCTCTATTACAGGATTTACGGTATGATCCAAACTTGAATTGGAACACCGGAAAATATTTATTTTTCAATTACTCATTTTTTTATACATAAAAAGTTTTCTTATACATAAAAAGTAAAAAAAAAACAGTACGATCTCTTGAGACGTCCAGCCCACGCATTGACTGAAAAAAAAAACTGAAAAATATATATTCTGAAATTCCCTCAGTGTTCATTAAAAATGTTTTTGTAATAACACTGTTCTAATGTCTTTCACAAAAATATATGTGCCATTTTC</canonical>
            <polymorphic>CACTTCCTGAAAGCCACCCCCCCCCCCACCCCCAATTTTAATTTTGGGTCAAATTATCTCGATTCCTGTGAAAGATATCAAAAATTTGTAAACTGATAAATTGTGTACCATAACTATACCAACATTTTATCAGCTGACAAATTTGTGATATCTTTCACAGGAACAGAAAAATTTGAGCTCAAAGTTGAGAATATTATTCAAAAACTTTTTAAAAAATTTTCTTTCAGATTTCCTACAGTAGTAACCTCTTTGGGCTTGTAACAATAATTACCAGGATGAAATAGAATAGTTTGGTGCTGATTCAGATTTCTTACAATTAGGATCGTTATTTTCTCGGGGATACTGTATTTTTTGTCTCAAGTTATACTTTGAAAAATCATATTTTCGTGAAAACTCTTTCATCAAGCCAGGCCTCAGGCTACTACTCTTAGCTTGATATTTTCGACGAATCTTACTTGAATACCATCAGGAATTCCTCCAGACTTTTGGTGATGACCCAYTGAATTTTCAACGTAATCTACCGTGAAACCTATATTAGAAGAGCCCCCAGGCTGACAAGTTTGAGCTAACTTTTCTTGGTCCTATGCAAGATATCAAAAATGTTTCAACTACCAAAATACTTCCGACATTATGACAAACAATTTATCAGTTAACCGCCTTTTCGTCTCTTTGACAGCAACCAAGAAAAATCGGCTCAAAGTTAAAACTTACAACTGATAGGGGGCCCCTCTATTACAGGATTTACGGTATGATCCAAACTTGAATTGGAACACCGGAAAATATTTATTTTTCAATTACTCATTTTTTTATACATAAAAAGTTTTCTTATACATAAAAAGTAAAAAAAAAACAGTACGATCTCTTGAGACGTCCAGCCCACGCATTGACTGAAAAAAAAAACTGAAAAATATATATTCTGAAATTCCCTCAGTGTTCATTAAAAATGTTTTTGTAATAACACTGTTCTAATGTCTTTCACAAAAATATATGTGCCATTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>247 139 107 102 93 54 42 42 35 27 26 18 14 14 12 10 8 8 2</canonical_bands>
                <polymorphic_bands>247 139 107 102 93 54 42 42 35 34 27 18 14 14 12 10 8 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAATCTTACTTGAATACCATCA</pcr_primer_p1>
		<pcr_primer_p2>AATAAATATTTTCCGGTGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>343</pcr_amplicon_size>
		<canonical_amplicon>CGAATCTTACTTGAATACCATCAGGAATTCCTCCAGACTTTTGGTGATGACCCACTGAATTTTCAACGTAATCTACCGTGAAACCTATATTAGAAGAGCCCCCAGGCTGACAAGTTTGAGCTAACTTTTCTTGGTCCTATGCAAGATATCAAAAATGTTTCAACTACCAAAATACTTCCGACATTATGACAAACAATTTATCAGTTAACCGCCTTTTCGTCTCTTTGACAGCAACCAAGAAAAATCGGCTCAAAGTTAAAACTTACAACTGATAGGGGGCCCCTCTATTACAGGATTTACGGTATGATCCAAACTTGAATTGGAACACCGGAAAATATTTATT</canonical_amplicon>
		<polymorphic_amplicon>CGAATCTTACTTGAATACCATCAGGAATTCCTCCAGACTTTTGGTGATGACCCAYTGAATTTTCAACGTAATCTACCGTGAAACCTATATTAGAAGAGCCCCCAGGCTGACAAGTTTGAGCTAACTTTTCTTGGTCCTATGCAAGATATCAAAAATGTTTCAACTACCAAAATACTTCCGACATTATGACAAACAATTTATCAGTTAACCGCCTTTTCGTCTCTTTGACAGCAACCAAGAAAAATCGGCTCAAAGTTAAAACTTACAACTGATAGGGGGCCCCTCTATTACAGGATTTACGGTATGATCCAAACTTGAATTGGAACACCGGAAAATATTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb164</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>923507</contig_pos>
        <strand>+</strand>
        <context>TACTCATTTT[C/T]TTATACATAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACTTGAATTGGAACACCGGAAAATATTTATTTTTCAATTACTCATTTT</left_flank>
        <right_flank>TTATACATAAAAAGTTTTCTTATACATAAAAAGTAAAAAAAAAACAGTAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTTACAATTAGGATCGTTATTTTCTCGGGGATACTGTATTTTTTGTCTCAAGTTATACTTTGAAAAATCATATTTTCGTGAAAACTCTTTCATCAAGCCAGGCCTCAGGCTACTACTCTTAGCTTGATATTTTCGACGAATCTTACTTGAATACCATCAGGAATTCCTCCAGACTTTTGGTGATGACCCACTGAATTTTCAACGTAATCTACCGTGAAACCTATATTAGAAGAGCCCCCAGGCTGACAAGTTTGAGCTAACTTTTCTTGGTCCTATGCAAGATATCAAAAATGTTTCAACTACCAAAATACTTCCGACATTATGACAAACAATTTATCAGTTAACCGCCTTTTCGTCTCTTTGACAGCAACCAAGAAAAATCGGCTCAAAGTTAAAACTTACAACTGATAGGGGGCCCCTCTATTACAGGATTTACGGTATGATCCAAACTTGAATTGGAACACCGGAAAATATTTATTTTTCAATTACTCATTTTTTTATACATAAAAAGTTTTCTTATACATAAAAAGTAAAAAAAAAACAGTACGATCTCTTGAGACGTCCAGCCCACGCATTGACTGAAAAAAAAAACTGAAAAATATATATTCTGAAATTCCCTCAGTGTTCATTAAAAATGTTTTTGTAATAACACTGTTCTAATGTCTTTCACAAAAATATATGTGCCATTTTCGAGAACAATCAATGTTCTCTTCTTCGTTTTGTGTGGAATTATTGACTCATTTTCTTATTTTCGGAACATTTCTGATTGTAGCTACGGTTTCTCTCATTTTAACTCTTATAAAATATTCAGGTGTGTTACAATAATTTTTTTTATATTTTCAGAGTCTCCCCTCCTCTTCACTCTTGGCCCCTTGAGCATTCGTCTCTCCTCTCACCCTCACCTCCATCTTCCCCTAAAATGCGAATGTCCGATGTCGTCGACGACATCGTCGGTGAGATCAGCTAATCGGACACGTTCGTTGTGCCATCACCTCCA</canonical>
            <polymorphic>TTTCTTACAATTAGGATCGTTATTTTCTCGGGGATACTGTATTTTTTGTCTCAAGTTATACTTTGAAAAATCATATTTTCGTGAAAACTCTTTCATCAAGCCAGGCCTCAGGCTACTACTCTTAGCTTGATATTTTCGACGAATCTTACTTGAATACCATCAGGAATTCCTCCAGACTTTTGGTGATGACCCACTGAATTTTCAACGTAATCTACCGTGAAACCTATATTAGAAGAGCCCCCAGGCTGACAAGTTTGAGCTAACTTTTCTTGGTCCTATGCAAGATATCAAAAATGTTTCAACTACCAAAATACTTCCGACATTATGACAAACAATTTATCAGTTAACCGCCTTTTCGTCTCTTTGACAGCAACCAAGAAAAATCGGCTCAAAGTTAAAACTTACAACTGATAGGGGGCCCCTCTATTACAGGATTTACGGTATGATCCAAACTTGAATTGGAACACCGGAAAATATTTATTTTTCAATTACTCATTTTYTTATACATAAAAAGTTTTCTTATACATAAAAAGTAAAAAAAAAACAGTACGATCTCTTGAGACGTCCAGCCCACGCATTGACTGAAAAAAAAAACTGAAAAATATATATTCTGAAATTCCCTCAGTGTTCATTAAAAATGTTTTTGTAATAACACTGTTCTAATGTCTTTCACAAAAATATATGTGCCATTTTCGAGAACAATCAATGTTCTCTTCTTCGTTTTGTGTGGAATTATTGACTCATTTTCTTATTTTCGGAACATTTCTGATTGTAGCTACGGTTTCTCTCATTTTAACTCTTATAAAATATTCAGGTGTGTTACAATAATTTTTTTTATATTTTCAGAGTCTCCCCTCCTCTTCACTCTTGGCCCCTTGAGCATTCGTCTCTCCTCTCACCCTCACCTCCATCTTCCCCTAAAATGCGAATGTCCGATGTCGTCGACGACATCGTCGGTGAGATCAGCTAATCGGACACGTTCGTTGTGCCATCACCTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCAGACTTTTGGTGATGA</pcr_primer_p1>
		<pcr_primer_p2>TCTCAAGAGATCGTACTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>393</pcr_amplicon_size>
		<canonical_amplicon>CTCCAGACTTTTGGTGATGACCCACTGAATTTTCAACGTAATCTACCGTGAAACCTATATTAGAAGAGCCCCCAGGCTGACAAGTTTGAGCTAACTTTTCTTGGTCCTATGCAAGATATCAAAAATGTTTCAACTACCAAAATACTTCCGACATTATGACAAACAATTTATCAGTTAACCGCCTTTTCGTCTCTTTGACAGCAACCAAGAAAAATCGGCTCAAAGTTAAAACTTACAACTGATAGGGGGCCCCTCTATTACAGGATTTACGGTATGATCCAAACTTGAATTGGAACACCGGAAAATATTTATTTTTCAATTACTCATTTTTTTATACATAAAAAGTTTTCTTATACATAAAAAGTAAAAAAAAAACAGTACGATCTCTTGAGA</canonical_amplicon>
		<polymorphic_amplicon>CTCCAGACTTTTGGTGATGACCCACTGAATTTTCAACGTAATCTACCGTGAAACCTATATTAGAAGAGCCCCCAGGCTGACAAGTTTGAGCTAACTTTTCTTGGTCCTATGCAAGATATCAAAAATGTTTCAACTACCAAAATACTTCCGACATTATGACAAACAATTTATCAGTTAACCGCCTTTTCGTCTCTTTGACAGCAACCAAGAAAAATCGGCTCAAAGTTAAAACTTACAACTGATAGGGGGCCCCTCTATTACAGGATTTACGGTATGATCCAAACTTGAATTGGAACACCGGAAAATATTTATTTTTCAATTACTCATTTTYTTATACATAAAAAGTTTTCTTATACATAAAAAGTAAAAAAAAAACAGTACGATCTCTTGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb165</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>923456</contig_pos>
        <strand>+</strand>
        <context>cggtATGATM[A/C]AAACTTGAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACTTACAACTGATAGGGGGCCCCTCTATTACAGGATTTACGGTATGATC</left_flank>
        <right_flank>AAACTTGAATTGGAACACCGGAAAATATTTATTTTTCAATTACTCATTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTAACAATAATTACCAGGATGAAATAGAATAGTTTGGTGCTGATTCAGATTTCTTACAATTAGGATCGTTATTTTCTCGGGGATACTGTATTTTTTGTCTCAAGTTATACTTTGAAAAATCATATTTTCGTGAAAACTCTTTCATCAAGCCAGGCCTCAGGCTACTACTCTTAGCTTGATATTTTCGACGAATCTTACTTGAATACCATCAGGAATTCCTCCAGACTTTTGGTGATGACCCACTGAATTTTCAACGTAATCTACCGTGAAACCTATATTAGAAGAGCCCCCAGGCTGACAAGTTTGAGCTAACTTTTCTTGGTCCTATGCAAGATATCAAAAATGTTTCAACTACCAAAATACTTCCGACATTATGACAAACAATTTATCAGTTAACCGCCTTTTCGTCTCTTTGACAGCAACCAAGAAAAATCGGCTCAAAGTTAAAACTTACAACTGATAGGGGGCCCCTCTATTACAGGATTTACGGTATGATCCAAACTTGAATTGGAACACCGGAAAATATTTATTTTTCAATTACTCATTTTTTTATACATAAAAAGTTTTCTTATACATAAAAAGTAAAAAAAAAACAGTACGATCTCTTGAGACGTCCAGCCCACGCATTGACTGAAAAAAAAAACTGAAAAATATATATTCTGAAATTCCCTCAGTGTTCATTAAAAATGTTTTTGTAATAACACTGTTCTAATGTCTTTCACAAAAATATATGTGCCATTTTCGAGAACAATCAATGTTCTCTTCTTCGTTTTGTGTGGAATTATTGACTCATTTTCTTATTTTCGGAACATTTCTGATTGTAGCTACGGTTTCTCTCATTTTAACTCTTATAAAATATTCAGGTGTGTTACAATAATTTTTTTTATATTTTCAGAGTCTCCCCTCCTCTTCACTCTTGGCCCCTTGAGCATTCGTCTCTCCTCTCACCCTCACCTCCATCTTCCCCTAAAATGCGAATGTCCGATGTCGTCGACGAC</canonical>
            <polymorphic>TTGTAACAATAATTACCAGGATGAAATAGAATAGTTTGGTGCTGATTCAGATTTCTTACAATTAGGATCGTTATTTTCTCGGGGATACTGTATTTTTTGTCTCAAGTTATACTTTGAAAAATCATATTTTCGTGAAAACTCTTTCATCAAGCCAGGCCTCAGGCTACTACTCTTAGCTTGATATTTTCGACGAATCTTACTTGAATACCATCAGGAATTCCTCCAGACTTTTGGTGATGACCCACTGAATTTTCAACGTAATCTACCGTGAAACCTATATTAGAAGAGCCCCCAGGCTGACAAGTTTGAGCTAACTTTTCTTGGTCCTATGCAAGATATCAAAAATGTTTCAACTACCAAAATACTTCCGACATTATGACAAACAATTTATCAGTTAACCGCCTTTTCGTCTCTTTGACAGCAACCAAGAAAAATCGGCTCAAAGTTAAAACTTACAACTGATAGGGGGCCCCTCTATTACAGGATTTACGGTATGATCMAAACTTGAATTGGAACACCGGAAAATATTTATTTTTCAATTACTCATTTTTTTATACATAAAAAGTTTTCTTATACATAAAAAGTAAAAAAAAAACAGTACGATCTCTTGAGACGTCCAGCCCACGCATTGACTGAAAAAAAAAACTGAAAAATATATATTCTGAAATTCCCTCAGTGTTCATTAAAAATGTTTTTGTAATAACACTGTTCTAATGTCTTTCACAAAAATATATGTGCCATTTTCGAGAACAATCAATGTTCTCTTCTTCGTTTTGTGTGGAATTATTGACTCATTTTCTTATTTTCGGAACATTTCTGATTGTAGCTACGGTTTCTCTCATTTTAACTCTTATAAAATATTCAGGTGTGTTACAATAATTTTTTTTATATTTTCAGAGTCTCCCCTCCTCTTCACTCTTGGCCCCTTGAGCATTCGTCTCTCCTCTCACCCTCACCTCCATCTTCCCCTAAAATGCGAATGTCCGATGTCGTCGACGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>XcmI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCCAGACTTTTGGTGATGA</pcr_primer_p1>
		<pcr_primer_p2>TCTCAAGAGATCGTACTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>393</pcr_amplicon_size>
		<canonical_amplicon>CTCCAGACTTTTGGTGATGACCCACTGAATTTTCAACGTAATCTACCGTGAAACCTATATTAGAAGAGCCCCCAGGCTGACAAGTTTGAGCTAACTTTTCTTGGTCCTATGCAAGATATCAAAAATGTTTCAACTACCAAAATACTTCCGACATTATGACAAACAATTTATCAGTTAACCGCCTTTTCGTCTCTTTGACAGCAACCAAGAAAAATCGGCTCAAAGTTAAAACTTACAACTGATAGGGGGCCCCTCTATTACAGGATTTACGGTATGATCCAAACTTGAATTGGAACACCGGAAAATATTTATTTTTCAATTACTCATTTTTTTATACATAAAAAGTTTTCTTATACATAAAAAGTAAAAAAAAAACAGTACGATCTCTTGAGA</canonical_amplicon>
		<polymorphic_amplicon>CTCCAGACTTTTGGTGATGACCCACTGAATTTTCAACGTAATCTACCGTGAAACCTATATTAGAAGAGCCCCCAGGCTGACAAGTTTGAGCTAACTTTTCTTGGTCCTATGCAAGATATCAAAAATGTTTCAACTACCAAAATACTTCCGACATTATGACAAACAATTTATCAGTTAACCGCCTTTTCGTCTCTTTGACAGCAACCAAGAAAAATCGGCTCAAAGTTAAAACTTACAACTGATAGGGGGCCCCTCTATTACAGGATTTACGGTATGATCMAAACTTGAATTGGAACACCGGAAAATATTTATTTTTCAATTACTCATTTTTTTATACATAAAAAGTTTTCTTATACATAAAAAGTAAAAAAAAAACAGTACGATCTCTTGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb166</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>923455</contig_pos>
        <strand>+</strand>
        <context>acggtATGAT[A/C]MAAACTTGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAACTTACAACTGATAGGGGGCCCCTCTATTACAGGATTTACGGTATGAT</left_flank>
        <right_flank>CAAACTTGAATTGGAACACCGGAAAATATTTATTTTTCAATTACTCATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTGTAACAATAATTACCAGGATGAAATAGAATAGTTTGGTGCTGATTCAGATTTCTTACAATTAGGATCGTTATTTTCTCGGGGATACTGTATTTTTTGTCTCAAGTTATACTTTGAAAAATCATATTTTCGTGAAAACTCTTTCATCAAGCCAGGCCTCAGGCTACTACTCTTAGCTTGATATTTTCGACGAATCTTACTTGAATACCATCAGGAATTCCTCCAGACTTTTGGTGATGACCCACTGAATTTTCAACGTAATCTACCGTGAAACCTATATTAGAAGAGCCCCCAGGCTGACAAGTTTGAGCTAACTTTTCTTGGTCCTATGCAAGATATCAAAAATGTTTCAACTACCAAAATACTTCCGACATTATGACAAACAATTTATCAGTTAACCGCCTTTTCGTCTCTTTGACAGCAACCAAGAAAAATCGGCTCAAAGTTAAAACTTACAACTGATAGGGGGCCCCTCTATTACAGGATTTACGGTATGATCCAAACTTGAATTGGAACACCGGAAAATATTTATTTTTCAATTACTCATTTTTTTATACATAAAAAGTTTTCTTATACATAAAAAGTAAAAAAAAAACAGTACGATCTCTTGAGACGTCCAGCCCACGCATTGACTGAAAAAAAAAACTGAAAAATATATATTCTGAAATTCCCTCAGTGTTCATTAAAAATGTTTTTGTAATAACACTGTTCTAATGTCTTTCACAAAAATATATGTGCCATTTTCGAGAACAATCAATGTTCTCTTCTTCGTTTTGTGTGGAATTATTGACTCATTTTCTTATTTTCGGAACATTTCTGATTGTAGCTACGGTTTCTCTCATTTTAACTCTTATAAAATATTCAGGTGTGTTACAATAATTTTTTTTATATTTTCAGAGTCTCCCCTCCTCTTCACTCTTGGCCCCTTGAGCATTCGTCTCTCCTCTCACCCTCACCTCCATCTTCCCCTAAAATGCGAATGTCCGATGTCGTCGACGA</canonical>
            <polymorphic>CTTGTAACAATAATTACCAGGATGAAATAGAATAGTTTGGTGCTGATTCAGATTTCTTACAATTAGGATCGTTATTTTCTCGGGGATACTGTATTTTTTGTCTCAAGTTATACTTTGAAAAATCATATTTTCGTGAAAACTCTTTCATCAAGCCAGGCCTCAGGCTACTACTCTTAGCTTGATATTTTCGACGAATCTTACTTGAATACCATCAGGAATTCCTCCAGACTTTTGGTGATGACCCACTGAATTTTCAACGTAATCTACCGTGAAACCTATATTAGAAGAGCCCCCAGGCTGACAAGTTTGAGCTAACTTTTCTTGGTCCTATGCAAGATATCAAAAATGTTTCAACTACCAAAATACTTCCGACATTATGACAAACAATTTATCAGTTAACCGCCTTTTCGTCTCTTTGACAGCAACCAAGAAAAATCGGCTCAAAGTTAAAACTTACAACTGATAGGGGGCCCCTCTATTACAGGATTTACGGTATGATMCAAACTTGAATTGGAACACCGGAAAATATTTATTTTTCAATTACTCATTTTTTTATACATAAAAAGTTTTCTTATACATAAAAAGTAAAAAAAAAACAGTACGATCTCTTGAGACGTCCAGCCCACGCATTGACTGAAAAAAAAAACTGAAAAATATATATTCTGAAATTCCCTCAGTGTTCATTAAAAATGTTTTTGTAATAACACTGTTCTAATGTCTTTCACAAAAATATATGTGCCATTTTCGAGAACAATCAATGTTCTCTTCTTCGTTTTGTGTGGAATTATTGACTCATTTTCTTATTTTCGGAACATTTCTGATTGTAGCTACGGTTTCTCTCATTTTAACTCTTATAAAATATTCAGGTGTGTTACAATAATTTTTTTTATATTTTCAGAGTCTCCCCTCCTCTTCACTCTTGGCCCCTTGAGCATTCGTCTCTCCTCTCACCCTCACCTCCATCTTCCCCTAAAATGCGAATGTCCGATGTCGTCGACGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>430 398 106 66</canonical_bands>
                <polymorphic_bands>536 398 66</polymorphic_bands>
            </assay>
            <assay>
                <site>CCANNNNNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>XcmI</enzyme>
                </isoschizomers>
                <canonical_bands>507 493</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCCAGACTTTTGGTGATGA</pcr_primer_p1>
		<pcr_primer_p2>TCTCAAGAGATCGTACTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>393</pcr_amplicon_size>
		<canonical_amplicon>CTCCAGACTTTTGGTGATGACCCACTGAATTTTCAACGTAATCTACCGTGAAACCTATATTAGAAGAGCCCCCAGGCTGACAAGTTTGAGCTAACTTTTCTTGGTCCTATGCAAGATATCAAAAATGTTTCAACTACCAAAATACTTCCGACATTATGACAAACAATTTATCAGTTAACCGCCTTTTCGTCTCTTTGACAGCAACCAAGAAAAATCGGCTCAAAGTTAAAACTTACAACTGATAGGGGGCCCCTCTATTACAGGATTTACGGTATGATCCAAACTTGAATTGGAACACCGGAAAATATTTATTTTTCAATTACTCATTTTTTTATACATAAAAAGTTTTCTTATACATAAAAAGTAAAAAAAAAACAGTACGATCTCTTGAGA</canonical_amplicon>
		<polymorphic_amplicon>CTCCAGACTTTTGGTGATGACCCACTGAATTTTCAACGTAATCTACCGTGAAACCTATATTAGAAGAGCCCCCAGGCTGACAAGTTTGAGCTAACTTTTCTTGGTCCTATGCAAGATATCAAAAATGTTTCAACTACCAAAATACTTCCGACATTATGACAAACAATTTATCAGTTAACCGCCTTTTCGTCTCTTTGACAGCAACCAAGAAAAATCGGCTCAAAGTTAAAACTTACAACTGATAGGGGGCCCCTCTATTACAGGATTTACGGTATGATMCAAACTTGAATTGGAACACCGGAAAATATTTATTTTTCAATTACTCATTTTTTTATACATAAAAAGTTTTCTTATACATAAAAAGTAAAAAAAAAACAGTACGATCTCTTGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb192</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>972632</contig_pos>
        <strand>+</strand>
        <context>TAGGCGAATG[A/G]RRYGTKCMAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATG</left_flank>
        <right_flank>ATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATATATAAAAATACCGTATTTCCTCTAATAGAGGCCCATAGGCTTTTATTTTTTTAACCTCCTTCTGGGGGTGGACTAAATTTAGAAAAAAACGCTCAATTTATAAGGTTTTCGGTTTTTAACTGGACTGGAATAGTTATGAAACGACAATAACTAACGGGAAATACCAGAAAAATAAACAAGACAGATTATGTCTGCACTAACCGAAAAGAAAAATGCACAGCCAGGGTGGGCTTCAAATAGAGTATATTCTATCAAATAGTATATATTCTATTAGAGAAACTACTGTATTAAATTTTGAAAACAACGAACAGAGCATCTTGATGAAGCTTAAATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCCAACTGCCTCCTAATTCTTTTCCATTTTTATCCTTTAGTGCAGTAATTACCACCCATTCGCCATTGTACCATCCATTCGCCATAGTCCCGCTATAATCGAACAGAGCCGATTCTTCTACCGTTATCTGGTGTTGTATTTAAGCTTCATCAAGATGCTCTGTTCGTTGTTTTCAAAATTTAATACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAA</canonical>
            <polymorphic>TATATATAAAAATACCGTATTTCCTCTAATAGAGGCCCATAGGCTTTTATTTTTTTAACCTCCTTCTGGGGGTGGACTAAATTTAGAAAAAAACGCTCAATTTATAAGGTTTTCGGTTTTTAACTGGACTGGAATAGTTATGAAACGACAATAACTAACGGGAAATACCAGAAAAATAAACAAGACAGATTATGTCTGCACTAACCGAAAAGAAAAATGCACAGCCAGGGTGGGCTTCAAATAGAGTATATTCTATCAAATAGTATATATTCTATTAGAGAAACTACTGTATTAAATTTTGAAAACAACGAACAGAGCATCTTGATGAAGCTTAAATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGRATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCCAACTGCCTCCTAATTCTTTTCCATTTTTATCCTTTAGTGCAGTAATTACCACCCATTCGCCATTGTACCATCCATTCGCCATAGTCCCGCTATAATCGAACAGAGCCGATTCTTCTACCGTTATCTGGTGTTGTATTTAAGCTTCATCAAGATGCTCTGTTCGTTGTTTTCAAAATTTAATACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATACAACACCAGATAACGGTAG</pcr_primer_p1>
		<pcr_primer_p2>GAATTCCTATGAAACCTTTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTC</canonical_amplicon>
		<polymorphic_amplicon>AATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGRATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb193</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>972633</contig_pos>
        <strand>+</strand>
        <context>AGGCGAATGR[A/G]RYGTKCMATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGG</left_flank>
        <right_flank>TGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATATAAAAATACCGTATTTCCTCTAATAGAGGCCCATAGGCTTTTATTTTTTTAACCTCCTTCTGGGGGTGGACTAAATTTAGAAAAAAACGCTCAATTTATAAGGTTTTCGGTTTTTAACTGGACTGGAATAGTTATGAAACGACAATAACTAACGGGAAATACCAGAAAAATAAACAAGACAGATTATGTCTGCACTAACCGAAAAGAAAAATGCACAGCCAGGGTGGGCTTCAAATAGAGTATATTCTATCAAATAGTATATATTCTATTAGAGAAACTACTGTATTAAATTTTGAAAACAACGAACAGAGCATCTTGATGAAGCTTAAATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCCAACTGCCTCCTAATTCTTTTCCATTTTTATCCTTTAGTGCAGTAATTACCACCCATTCGCCATTGTACCATCCATTCGCCATAGTCCCGCTATAATCGAACAGAGCCGATTCTTCTACCGTTATCTGGTGTTGTATTTAAGCTTCATCAAGATGCTCTGTTCGTTGTTTTCAAAATTTAATACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAAT</canonical>
            <polymorphic>ATATATAAAAATACCGTATTTCCTCTAATAGAGGCCCATAGGCTTTTATTTTTTTAACCTCCTTCTGGGGGTGGACTAAATTTAGAAAAAAACGCTCAATTTATAAGGTTTTCGGTTTTTAACTGGACTGGAATAGTTATGAAACGACAATAACTAACGGGAAATACCAGAAAAATAAACAAGACAGATTATGTCTGCACTAACCGAAAAGAAAAATGCACAGCCAGGGTGGGCTTCAAATAGAGTATATTCTATCAAATAGTATATATTCTATTAGAGAAACTACTGTATTAAATTTTGAAAACAACGAACAGAGCATCTTGATGAAGCTTAAATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGRTGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCCAACTGCCTCCTAATTCTTTTCCATTTTTATCCTTTAGTGCAGTAATTACCACCCATTCGCCATTGTACCATCCATTCGCCATAGTCCCGCTATAATCGAACAGAGCCGATTCTTCTACCGTTATCTGGTGTTGTATTTAAGCTTCATCAAGATGCTCTGTTCGTTGTTTTCAAAATTTAATACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATACAACACCAGATAACGGTAG</pcr_primer_p1>
		<pcr_primer_p2>GAATTCCTATGAAACCTTTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTC</canonical_amplicon>
		<polymorphic_amplicon>AATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGRTGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb194</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>972634</contig_pos>
        <strand>+</strand>
        <context>GGCGAATGRR[A/G]YGTKCMATGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGA</left_flank>
        <right_flank>GGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATATAAAAATACCGTATTTCCTCTAATAGAGGCCCATAGGCTTTTATTTTTTTAACCTCCTTCTGGGGGTGGACTAAATTTAGAAAAAAACGCTCAATTTATAAGGTTTTCGGTTTTTAACTGGACTGGAATAGTTATGAAACGACAATAACTAACGGGAAATACCAGAAAAATAAACAAGACAGATTATGTCTGCACTAACCGAAAAGAAAAATGCACAGCCAGGGTGGGCTTCAAATAGAGTATATTCTATCAAATAGTATATATTCTATTAGAGAAACTACTGTATTAAATTTTGAAAACAACGAACAGAGCATCTTGATGAAGCTTAAATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCCAACTGCCTCCTAATTCTTTTCCATTTTTATCCTTTAGTGCAGTAATTACCACCCATTCGCCATTGTACCATCCATTCGCCATAGTCCCGCTATAATCGAACAGAGCCGATTCTTCTACCGTTATCTGGTGTTGTATTTAAGCTTCATCAAGATGCTCTGTTCGTTGTTTTCAAAATTTAATACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAATC</canonical>
            <polymorphic>TATATAAAAATACCGTATTTCCTCTAATAGAGGCCCATAGGCTTTTATTTTTTTAACCTCCTTCTGGGGGTGGACTAAATTTAGAAAAAAACGCTCAATTTATAAGGTTTTCGGTTTTTAACTGGACTGGAATAGTTATGAAACGACAATAACTAACGGGAAATACCAGAAAAATAAACAAGACAGATTATGTCTGCACTAACCGAAAAGAAAAATGCACAGCCAGGGTGGGCTTCAAATAGAGTATATTCTATCAAATAGTATATATTCTATTAGAGAAACTACTGTATTAAATTTTGAAAACAACGAACAGAGCATCTTGATGAAGCTTAAATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGARGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCCAACTGCCTCCTAATTCTTTTCCATTTTTATCCTTTAGTGCAGTAATTACCACCCATTCGCCATTGTACCATCCATTCGCCATAGTCCCGCTATAATCGAACAGAGCCGATTCTTCTACCGTTATCTGGTGTTGTATTTAAGCTTCATCAAGATGCTCTGTTCGTTGTTTTCAAAATTTAATACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATACAACACCAGATAACGGTAG</pcr_primer_p1>
		<pcr_primer_p2>GAATTCCTATGAAACCTTTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGARGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTC</canonical_amplicon>
		<polymorphic_amplicon>AATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGARGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb204</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>972691</contig_pos>
        <strand>+</strand>
        <context>GGTTCCCMGA[A/G]RGTTCAAAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGA</left_flank>
        <right_flank>AGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCTTCTGGGGGTGGACTAAATTTAGAAAAAAACGCTCAATTTATAAGGTTTTCGGTTTTTAACTGGACTGGAATAGTTATGAAACGACAATAACTAACGGGAAATACCAGAAAAATAAACAAGACAGATTATGTCTGCACTAACCGAAAAGAAAAATGCACAGCCAGGGTGGGCTTCAAATAGAGTATATTCTATCAAATAGTATATATTCTATTAGAGAAACTACTGTATTAAATTTTGAAAACAACGAACAGAGCATCTTGATGAAGCTTAAATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCCAACTGCCTCCTAATTCTTTTCCATTTTTATCCTTTAGTGCAGTAATTACCACCCATTCGCCATTGTACCATCCATTCGCCATAGTCCCGCTATAATCGAACAGAGCCGATTCTTCTACCGTTATCTGGTGTTGTATTTAAGCTTCATCAAGATGCTCTGTTCGTTGTTTTCAAAATTTAATACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAATCTGTCTTGTTTATTTTTCTGGTATTTCCCGTTAGTTATTGTCGTTTCATAACTATTCC</canonical>
            <polymorphic>CTCCTTCTGGGGGTGGACTAAATTTAGAAAAAAACGCTCAATTTATAAGGTTTTCGGTTTTTAACTGGACTGGAATAGTTATGAAACGACAATAACTAACGGGAAATACCAGAAAAATAAACAAGACAGATTATGTCTGCACTAACCGAAAAGAAAAATGCACAGCCAGGGTGGGCTTCAAATAGAGTATATTCTATCAAATAGTATATATTCTATTAGAGAAACTACTGTATTAAATTTTGAAAACAACGAACAGAGCATCTTGATGAAGCTTAAATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGARAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCCAACTGCCTCCTAATTCTTTTCCATTTTTATCCTTTAGTGCAGTAATTACCACCCATTCGCCATTGTACCATCCATTCGCCATAGTCCCGCTATAATCGAACAGAGCCGATTCTTCTACCGTTATCTGGTGTTGTATTTAAGCTTCATCAAGATGCTCTGTTCGTTGTTTTCAAAATTTAATACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAATCTGTCTTGTTTATTTTTCTGGTATTTCCCGTTAGTTATTGTCGTTTCATAACTATTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 479 17</canonical_bands>
                <polymorphic_bands>521 479</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAATAATGAGTGGTACAATAGG</pcr_primer_p1>
		<pcr_primer_p2>GGCGTCTAAACAATCAAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCC</canonical_amplicon>
		<polymorphic_amplicon>GGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGARAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb205</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>972727</contig_pos>
        <strand>+</strand>
        <context>CAGATCTCAT[G/T]GAAAATTWCC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCAT</left_flank>
        <right_flank>GAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAATTTATAAGGTTTTCGGTTTTTAACTGGACTGGAATAGTTATGAAACGACAATAACTAACGGGAAATACCAGAAAAATAAACAAGACAGATTATGTCTGCACTAACCGAAAAGAAAAATGCACAGCCAGGGTGGGCTTCAAATAGAGTATATTCTATCAAATAGTATATATTCTATTAGAGAAACTACTGTATTAAATTTTGAAAACAACGAACAGAGCATCTTGATGAAGCTTAAATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCCAACTGCCTCCTAATTCTTTTCCATTTTTATCCTTTAGTGCAGTAATTACCACCCATTCGCCATTGTACCATCCATTCGCCATAGTCCCGCTATAATCGAACAGAGCCGATTCTTCTACCGTTATCTGGTGTTGTATTTAAGCTTCATCAAGATGCTCTGTTCGTTGTTTTCAAAATTTAATACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAATCTGTCTTGTTTATTTTTCTGGTATTTCCCGTTAGTTATTGTCGTTTCATAACTATTCCAGTCCAGTTAAAAACCGAAAACCTTATAAATTGAGC</canonical>
            <polymorphic>CTCAATTTATAAGGTTTTCGGTTTTTAACTGGACTGGAATAGTTATGAAACGACAATAACTAACGGGAAATACCAGAAAAATAAACAAGACAGATTATGTCTGCACTAACCGAAAAGAAAAATGCACAGCCAGGGTGGGCTTCAAATAGAGTATATTCTATCAAATAGTATATATTCTATTAGAGAAACTACTGTATTAAATTTTGAAAACAACGAACAGAGCATCTTGATGAAGCTTAAATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATKGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCCAACTGCCTCCTAATTCTTTTCCATTTTTATCCTTTAGTGCAGTAATTACCACCCATTCGCCATTGTACCATCCATTCGCCATAGTCCCGCTATAATCGAACAGAGCCGATTCTTCTACCGTTATCTGGTGTTGTATTTAAGCTTCATCAAGATGCTCTGTTCGTTGTTTTCAAAATTTAATACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAATCTGTCTTGTTTATTTTTCTGGTATTTCCCGTTAGTTATTGTCGTTTCATAACTATTCCAGTCCAGTTAAAAACCGAAAACCTTATAAATTGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAATAATGAGTGGTACAATAGG</pcr_primer_p1>
		<pcr_primer_p2>GGCGTCTAAACAATCAAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCC</canonical_amplicon>
		<polymorphic_amplicon>GGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATKGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb207</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>972758</contig_pos>
        <strand>+</strand>
        <context>AGCATACGGA[A/G]ATCTCATATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGA</left_flank>
        <right_flank>ATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACTGGAATAGTTATGAAACGACAATAACTAACGGGAAATACCAGAAAAATAAACAAGACAGATTATGTCTGCACTAACCGAAAAGAAAAATGCACAGCCAGGGTGGGCTTCAAATAGAGTATATTCTATCAAATAGTATATATTCTATTAGAGAAACTACTGTATTAAATTTTGAAAACAACGAACAGAGCATCTTGATGAAGCTTAAATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCCAACTGCCTCCTAATTCTTTTCCATTTTTATCCTTTAGTGCAGTAATTACCACCCATTCGCCATTGTACCATCCATTCGCCATAGTCCCGCTATAATCGAACAGAGCCGATTCTTCTACCGTTATCTGGTGTTGTATTTAAGCTTCATCAAGATGCTCTGTTCGTTGTTTTCAAAATTTAATACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAATCTGTCTTGTTTATTTTTCTGGTATTTCCCGTTAGTTATTGTCGTTTCATAACTATTCCAGTCCAGTTAAAAACCGAAAACCTTATAAATTGAGCGTTTTTTTCTAAATTTAGTCCACCCCCAGAA</canonical>
            <polymorphic>GACTGGAATAGTTATGAAACGACAATAACTAACGGGAAATACCAGAAAAATAAACAAGACAGATTATGTCTGCACTAACCGAAAAGAAAAATGCACAGCCAGGGTGGGCTTCAAATAGAGTATATTCTATCAAATAGTATATATTCTATTAGAGAAACTACTGTATTAAATTTTGAAAACAACGAACAGAGCATCTTGATGAAGCTTAAATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGARATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCCAACTGCCTCCTAATTCTTTTCCATTTTTATCCTTTAGTGCAGTAATTACCACCCATTCGCCATTGTACCATCCATTCGCCATAGTCCCGCTATAATCGAACAGAGCCGATTCTTCTACCGTTATCTGGTGTTGTATTTAAGCTTCATCAAGATGCTCTGTTCGTTGTTTTCAAAATTTAATACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAATCTGTCTTGTTTATTTTTCTGGTATTTCCCGTTAGTTATTGTCGTTTCATAACTATTCCAGTCCAGTTAAAAACCGAAAACCTTATAAATTGAGCGTTTTTTTCTAAATTTAGTCCACCCCCAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>501 415 45 39</canonical_bands>
                <polymorphic_bands>540 415 45</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>501 460 39</canonical_bands>
                <polymorphic_bands>540 460</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>501 460 39</canonical_bands>
                <polymorphic_bands>540 460</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAATAATGAGTGGTACAATAGG</pcr_primer_p1>
		<pcr_primer_p2>GGCGTCTAAACAATCAAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCC</canonical_amplicon>
		<polymorphic_amplicon>GGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGARATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb208</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>973970</contig_pos>
        <strand></strand>
        <context>AGAACAATAA[A/C]TTGTTCTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATATCTATCAACATAATAGCATCTTGGAATACAGTCTGGGAGAACAATAA</left_flank>
        <right_flank>TTGTTCTTTCTAGACTTTCTCCTCATTTCTCCTTGTTCCGTTTCTGTCGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTACATGAAATACTGTAATAGAAGGGTCCCGTAAATGTACTGTCAGTTAAAATATTAGACTGCGCCGAAGGCGCACCAGCCAGCTGTTCGAAAAAAACAGTTTGGTTTGTTTAATGATCGAGAGTGATAGTAGCATGTCAATTTATATTATTGCTGGGCAAGTACAAAAAAAAACATTCCACGATCATTTCAGTGTCTCACAGATACCCAAATTTGAGGATTAGTGTGACTGGCTTCTTCCCTTGATCCGAACAATCTGCTTTTTAAAAGTGAGAGTCGTTCGTTGAACATAACCATAACAAATCTGTAACAAACGTATTCATATTTTTGAATTTCCGAGGTATACTGTACCCATCAATGGAATGAACACACTGCCAAACCAGTGTAACACTTATAAATGTCCAATATCTTTGCTTACTTATCTCACTGAGTTTGAATGTGAAAAGCATATCTATCAACATAATAGCATCTTGGAATACAGTCTGGGAGAACAATAAATTGTTCTTTCTAGACTTTCTCCTCATTTCTCCTTGTTCCGTTTCTGTCGATTTAAAAAAGAAGTAAATCCTTGAGAATGTAGCAACGTTCATAACAATCAGAAGAATCAGAAGTATGGCAGTATTGTTGAATGGATTGGGAATACCATTATGGCATTTTGGATCCATATTTGGGATCCATGATAATGTTTTGTAGGAGAATAGAGTGTAACAATCCTTGGCTGAAACAAAAAAGAACCTGAACAAATGGAAACATTAATGGAACTTACGAAGAATGGTTACAAGGTAGTAAATGTTATCTGCTAACTTTAAAGCAAAGTGAAATACCACAATAACCTAAATTTAGTCATTAGGGTTTAAACGGAATGGTAAAACTCACAAATGTGATTTTGATACTAAAAAATTTCGCGTACCATAACGGAAAGAACATTGCACAAAACCGATTCAAAGCAATCAACAATCCACAATACTGTACAGCAATATAAATGTTGTTACAAGATA</canonical>
            <polymorphic>AGTTACATGAAATACTGTAATAGAAGGGTCCCGTAAATGTACTGTCAGTTAAAATATTAGACTGCGCCGAAGGCGCACCAGCCAGCTGTTCGAAAAAAACAGTTTGGTTTGTTTAATGATCGAGAGTGATAGTAGCATGTCAATTTATATTATTGCTGGGCAAGTACAAAAAAAAACATTCCACGATCATTTCAGTGTCTCACAGATACCCAAATTTGAGGATTAGTGTGACTGGCTTCTTCCCTTGATCCGAACAATCTGCTTTTTAAAAGTGAGAGTCGTTCGTTGAACATAACCATAACAAATCTGTAACAAACGTATTCATATTTTTGAATTTCCGAGGTATACTGTACCCATCAATGGAATGAACACACTGCCAAACCAGTGTAACACTTATAAATGTCCAATATCTTTGCTTACTTATCTCACTGAGTTTGAATGTGAAAAGCATATCTATCAACATAATAGCATCTTGGAATACAGTCTGGGAGAACAATAAMTTGTTCTTTCTAGACTTTCTCCTCATTTCTCCTTGTTCCGTTTCTGTCGATTTAAAAAAGAAGTAAATCCTTGAGAATGTAGCAACGTTCATAACAATCAGAAGAATCAGAAGTATGGCAGTATTGTTGAATGGATTGGGAATACCATTATGGCATTTTGGATCCATATTTGGGATCCATGATAATGTTTTGTAGGAGAATAGAGTGTAACAATCCTTGGCTGAAACAAAAAAGAACCTGAACAAATGGAAACATTAATGGAACTTACGAAGAATGGTTACAAGGTAGTAAATGTTATCTGCTAACTTTAAAGCAAAGTGAAATACCACAATAACCTAAATTTAGTCATTAGGGTTTAAACGGAATGGTAAAACTCACAAATGTGATTTTGATACTAAAAAATTTCGCGTACCATAACGGAAAGAACATTGCACAAAACCGATTCAAAGCAATCAACAATCCACAATACTGTACAGCAATATAAATGTTGTTACAAGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>340 166 141 120 100 71 62</canonical_bands>
                <polymorphic_bands>506 141 120 100 71 62</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTTTTGAATTTCCGAGGTAT</pcr_primer_p1>
		<pcr_primer_p2>CATTCTCAAGGATTTACTTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TATTTTTGAATTTCCGAGGTATACTGTACCCATCAATGGAATGAACACACTGCCAAACCAGTGTAACACTTATAAATGTCCAATATCTTTGCTTACTTATCTCACTGAGTTTGAATGTGAAAAGCATATCTATCAACATAATAGCATCTTGGAATACAGTCTGGGAGAACAATAAATTGTTCTTTCTAGACTTTCTCCTCATTTCTCCTTGTTCCGTTTCTGTCGATTTAAAAAAGAAGTAAATCCTTGAGAATG</canonical_amplicon>
		<polymorphic_amplicon>TATTTTTGAATTTCCGAGGTATACTGTACCCATCAATGGAATGAACACACTGCCAAACCAGTGTAACACTTATAAATGTCCAATATCTTTGCTTACTTATCTCACTGAGTTTGAATGTGAAAAGCATATCTATCAACATAATAGCATCTTGGAATACAGTCTGGGAGAACAATAAMTTGTTCTTTCTAGACTTTCTCCTCATTTCTCCTTGTTCCGTTTCTGTCGATTTAAAAAAGAAGTAAATCCTTGAGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb209</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>973888</contig_pos>
        <strand></strand>
        <context>TATCTTTGCT[T/C]ACTTATCTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AACACACTGCCAAACCAGTGTAACACTTATAAATGTCCAATATCTTTGCT</left_flank>
        <right_flank>ACTTATCTCACTGAGTTTGAATGTGAAAAGCATATCTATCAACATAATAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGAGGCTTTAGAAAAAATCATTTATTGAGTTTATGAATGGAATGTCAGAAGTGTTACCATTGCCTTTGGATACAGCAAGCAGTTACATGAAATACTGTAATAGAAGGGTCCCGTAAATGTACTGTCAGTTAAAATATTAGACTGCGCCGAAGGCGCACCAGCCAGCTGTTCGAAAAAAACAGTTTGGTTTGTTTAATGATCGAGAGTGATAGTAGCATGTCAATTTATATTATTGCTGGGCAAGTACAAAAAAAAACATTCCACGATCATTTCAGTGTCTCACAGATACCCAAATTTGAGGATTAGTGTGACTGGCTTCTTCCCTTGATCCGAACAATCTGCTTTTTAAAAGTGAGAGTCGTTCGTTGAACATAACCATAACAAATCTGTAACAAACGTATTCATATTTTTGAATTTCCGAGGTATACTGTACCCATCAATGGAATGAACACACTGCCAAACCAGTGTAACACTTATAAATGTCCAATATCTTTGCTTACTTATCTCACTGAGTTTGAATGTGAAAAGCATATCTATCAACATAATAGCATCTTGGAATACAGTCTGGGAGAACAATAAATTGTTCTTTCTAGACTTTCTCCTCATTTCTCCTTGTTCCGTTTCTGTCGATTTAAAAAAGAAGTAAATCCTTGAGAATGTAGCAACGTTCATAACAATCAGAAGAATCAGAAGTATGGCAGTATTGTTGAATGGATTGGGAATACCATTATGGCATTTTGGATCCATATTTGGGATCCATGATAATGTTTTGTAGGAGAATAGAGTGTAACAATCCTTGGCTGAAACAAAAAAGAACCTGAACAAATGGAAACATTAATGGAACTTACGAAGAATGGTTACAAGGTAGTAAATGTTATCTGCTAACTTTAAAGCAAAGTGAAATACCACAATAACCTAAATTTAGTCATTAGGGTTTAAACGGAATGGTAAAACTCACAAATGTGATTTTGATACTAAAAAATTTCGCGTACCATAAC</canonical>
            <polymorphic>AAAGAGGCTTTAGAAAAAATCATTTATTGAGTTTATGAATGGAATGTCAGAAGTGTTACCATTGCCTTTGGATACAGCAAGCAGTTACATGAAATACTGTAATAGAAGGGTCCCGTAAATGTACTGTCAGTTAAAATATTAGACTGCGCCGAAGGCGCACCAGCCAGCTGTTCGAAAAAAACAGTTTGGTTTGTTTAATGATCGAGAGTGATAGTAGCATGTCAATTTATATTATTGCTGGGCAAGTACAAAAAAAAACATTCCACGATCATTTCAGTGTCTCACAGATACCCAAATTTGAGGATTAGTGTGACTGGCTTCTTCCCTTGATCCGAACAATCTGCTTTTTAAAAGTGAGAGTCGTTCGTTGAACATAACCATAACAAATCTGTAACAAACGTATTCATATTTTTGAATTTCCGAGGTATACTGTACCCATCAATGGAATGAACACACTGCCAAACCAGTGTAACACTTATAAATGTCCAATATCTTTGCTYACTTATCTCACTGAGTTTGAATGTGAAAAGCATATCTATCAACATAATAGCATCTTGGAATACAGTCTGGGAGAACAATAAATTGTTCTTTCTAGACTTTCTCCTCATTTCTCCTTGTTCCGTTTCTGTCGATTTAAAAAAGAAGTAAATCCTTGAGAATGTAGCAACGTTCATAACAATCAGAAGAATCAGAAGTATGGCAGTATTGTTGAATGGATTGGGAATACCATTATGGCATTTTGGATCCATATTTGGGATCCATGATAATGTTTTGTAGGAGAATAGAGTGTAACAATCCTTGGCTGAAACAAAAAAGAACCTGAACAAATGGAAACATTAATGGAACTTACGAAGAATGGTTACAAGGTAGTAAATGTTATCTGCTAACTTTAAAGCAAAGTGAAATACCACAATAACCTAAATTTAGTCATTAGGGTTTAAACGGAATGGTAAAACTCACAAATGTGATTTTGATACTAAAAAATTTCGCGTACCATAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTGAACATAACCATAACAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGGAGAAATGAGGAGAAAGTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTTGAACATAACCATAACAAATCTGTAACAAACGTATTCATATTTTTGAATTTCCGAGGTATACTGTACCCATCAATGGAATGAACACACTGCCAAACCAGTGTAACACTTATAAATGTCCAATATCTTTGCTTACTTATCTCACTGAGTTTGAATGTGAAAAGCATATCTATCAACATAATAGCATCTTGGAATACAGTCTGGGAGAACAATAAATTGTTCTTTCTAGACTTTCTCCTCATTTCTCCT</canonical_amplicon>
		<polymorphic_amplicon>CGTTGAACATAACCATAACAAATCTGTAACAAACGTATTCATATTTTTGAATTTCCGAGGTATACTGTACCCATCAATGGAATGAACACACTGCCAAACCAGTGTAACACTTATAAATGTCCAATATCTTTGCTYACTTATCTCACTGAGTTTGAATGTGAAAAGCATATCTATCAACATAATAGCATCTTGGAATACAGTCTGGGAGAACAATAAATTGTTCTTTCTAGACTTTCTCCTCATTTCTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb210</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>973819</contig_pos>
        <strand></strand>
        <context>CGAGGTATAC[T/C]GTACCCATCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAACAAATCTGTAACAAACGTATTCATATTTTTGAATTTCCGAGGTATAC</left_flank>
        <right_flank>GTACCCATCAATGGAATGAACACACTGCCAAACCAGTGTAACACTTATAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGACTATTTACCATTACATGTGTTGAGAGGATACTACGAAGCTATTATTCTGATAATCACAGTTTATTAAAGAGGCTTTAGAAAAAATCATTTATTGAGTTTATGAATGGAATGTCAGAAGTGTTACCATTGCCTTTGGATACAGCAAGCAGTTACATGAAATACTGTAATAGAAGGGTCCCGTAAATGTACTGTCAGTTAAAATATTAGACTGCGCCGAAGGCGCACCAGCCAGCTGTTCGAAAAAAACAGTTTGGTTTGTTTAATGATCGAGAGTGATAGTAGCATGTCAATTTATATTATTGCTGGGCAAGTACAAAAAAAAACATTCCACGATCATTTCAGTGTCTCACAGATACCCAAATTTGAGGATTAGTGTGACTGGCTTCTTCCCTTGATCCGAACAATCTGCTTTTTAAAAGTGAGAGTCGTTCGTTGAACATAACCATAACAAATCTGTAACAAACGTATTCATATTTTTGAATTTCCGAGGTATACTGTACCCATCAATGGAATGAACACACTGCCAAACCAGTGTAACACTTATAAATGTCCAATATCTTTGCTTACTTATCTCACTGAGTTTGAATGTGAAAAGCATATCTATCAACATAATAGCATCTTGGAATACAGTCTGGGAGAACAATAAATTGTTCTTTCTAGACTTTCTCCTCATTTCTCCTTGTTCCGTTTCTGTCGATTTAAAAAAGAAGTAAATCCTTGAGAATGTAGCAACGTTCATAACAATCAGAAGAATCAGAAGTATGGCAGTATTGTTGAATGGATTGGGAATACCATTATGGCATTTTGGATCCATATTTGGGATCCATGATAATGTTTTGTAGGAGAATAGAGTGTAACAATCCTTGGCTGAAACAAAAAAGAACCTGAACAAATGGAAACATTAATGGAACTTACGAAGAATGGTTACAAGGTAGTAAATGTTATCTGCTAACTTTAAAGCAAAGTGAAATACCACAATAACCTAAATTTAGTCAT</canonical>
            <polymorphic>TCGACTATTTACCATTACATGTGTTGAGAGGATACTACGAAGCTATTATTCTGATAATCACAGTTTATTAAAGAGGCTTTAGAAAAAATCATTTATTGAGTTTATGAATGGAATGTCAGAAGTGTTACCATTGCCTTTGGATACAGCAAGCAGTTACATGAAATACTGTAATAGAAGGGTCCCGTAAATGTACTGTCAGTTAAAATATTAGACTGCGCCGAAGGCGCACCAGCCAGCTGTTCGAAAAAAACAGTTTGGTTTGTTTAATGATCGAGAGTGATAGTAGCATGTCAATTTATATTATTGCTGGGCAAGTACAAAAAAAAACATTCCACGATCATTTCAGTGTCTCACAGATACCCAAATTTGAGGATTAGTGTGACTGGCTTCTTCCCTTGATCCGAACAATCTGCTTTTTAAAAGTGAGAGTCGTTCGTTGAACATAACCATAACAAATCTGTAACAAACGTATTCATATTTTTGAATTTCCGAGGTATACYGTACCCATCAATGGAATGAACACACTGCCAAACCAGTGTAACACTTATAAATGTCCAATATCTTTGCTTACTTATCTCACTGAGTTTGAATGTGAAAAGCATATCTATCAACATAATAGCATCTTGGAATACAGTCTGGGAGAACAATAAATTGTTCTTTCTAGACTTTCTCCTCATTTCTCCTTGTTCCGTTTCTGTCGATTTAAAAAAGAAGTAAATCCTTGAGAATGTAGCAACGTTCATAACAATCAGAAGAATCAGAAGTATGGCAGTATTGTTGAATGGATTGGGAATACCATTATGGCATTTTGGATCCATATTTGGGATCCATGATAATGTTTTGTAGGAGAATAGAGTGTAACAATCCTTGGCTGAAACAAAAAAGAACCTGAACAAATGGAAACATTAATGGAACTTACGAAGAATGGTTACAAGGTAGTAAATGTTATCTGCTAACTTTAAAGCAAAGTGAAATACCACAATAACCTAAATTTAGTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTGAACATAACCATAACAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGGAGAAATGAGGAGAAAGTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTTGAACATAACCATAACAAATCTGTAACAAACGTATTCATATTTTTGAATTTCCGAGGTATACTGTACCCATCAATGGAATGAACACACTGCCAAACCAGTGTAACACTTATAAATGTCCAATATCTTTGCTTACTTATCTCACTGAGTTTGAATGTGAAAAGCATATCTATCAACATAATAGCATCTTGGAATACAGTCTGGGAGAACAATAAATTGTTCTTTCTAGACTTTCTCCTCATTTCTCCT</canonical_amplicon>
		<polymorphic_amplicon>CGTTGAACATAACCATAACAAATCTGTAACAAACGTATTCATATTTTTGAATTTCCGAGGTATACYGTACCCATCAATGGAATGAACACACTGCCAAACCAGTGTAACACTTATAAATGTCCAATATCTTTGCTTACTTATCTCACTGAGTTTGAATGTGAAAAGCATATCTATCAACATAATAGCATCTTGGAATACAGTCTGGGAGAACAATAAATTGTTCTTTCTAGACTTTCTCCTCATTTCTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb211</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1018331</contig_pos>
        <strand>+</strand>
        <context>AGTTGGTTAA[A/G]ATCAGTTCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTCGCTCAGCGATTCCACAAGAAGGCTAAGTTGCGTGACAGTTGGTTAA</left_flank>
        <right_flank>ATCAGTTCAAGTAGTACTGGAAGAGATGGAACATGGACGCAGTGCGTCTC</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATTGCCAATGTAAGTTTTCCTTCCCCGAATACATGTAAAGAAATATGGAATTTTCTAGATTGTTGGAAAACTGATGGTATCCGAAACAATGGAGGACGATTACGAACACATCGCATCCGAGCTTCTGAACTGGATCCGCATCACTATTAAAACTTTGGAATCTCGTCGTTTCCCCAACTCGCTGAATGGAATGCGCGATGAGCATGCGAAGTTCAACCAGTTCCGCACAAGTGAAAAACCACCGAAATACAAGGAGAAAGGAGAGTTGGAAGCATTGTTCTTCACAATTCAAACGAAGAGAAAGGCAATGAGCCGAAAACAGTATCAACCGCCACAAGGATTGTTCATGCACGATATCGAATCTGCTTGGGCACAGTTGGATTATGCTGAAAATGAGAGACAAGTTTCTATCATTGCCGAGCTTCAAAGACAGGAGAAGTTGGAACAACTCGCTCAGCGATTCCACAAGAAGGCTAAGTTGCGTGACAGTTGGTTAAAATCAGTTCAAGTAGTACTGGAAGAGATGGAACATGGACGCAGTGCGTCTCAAGTCGAGAAAACTTTGAAGAAACAACAAGCCATCTCTACTGATATTCTGGCTCGTGAAGACCGTTTCAAGATGCTGACCGCAATGTGCAATGAGTTATGCACTGAGAAATATCACGAATCTGAAAAGATTCGTGGAATGGAAAGAGAGATAATCGACCGTTGGACTCAGCTGCTGGCGTTGCTGGAGCAACGTAAGCGTGCTCTGATGAGTCTCAATGATTTGATGTCACTGCTTCGCGACATTGATACCCTTTCCAACGAACTGTACTCTCTTGAACCAGCTGTCAGAAATCGTGATGTTGGAAAACATCTTATCGGCGTTGAAGATCTTCTTGGAAAACACGATCTAGTTGATGCTCAAATCAATGCACATGGATCTCTTCTCTCCAAACTTTCACAAGCTGCCAATAACTACATTCGTCACAAAGAAGAACAATTTGATGTTCTCC</canonical>
            <polymorphic>GTATTGCCAATGTAAGTTTTCCTTCCCCGAATACATGTAAAGAAATATGGAATTTTCTAGATTGTTGGAAAACTGATGGTATCCGAAACAATGGAGGACGATTACGAACACATCGCATCCGAGCTTCTGAACTGGATCCGCATCACTATTAAAACTTTGGAATCTCGTCGTTTCCCCAACTCGCTGAATGGAATGCGCGATGAGCATGCGAAGTTCAACCAGTTCCGCACAAGTGAAAAACCACCGAAATACAAGGAGAAAGGAGAGTTGGAAGCATTGTTCTTCACAATTCAAACGAAGAGAAAGGCAATGAGCCGAAAACAGTATCAACCGCCACAAGGATTGTTCATGCACGATATCGAATCTGCTTGGGCACAGTTGGATTATGCTGAAAATGAGAGACAAGTTTCTATCATTGCCGAGCTTCAAAGACAGGAGAAGTTGGAACAACTCGCTCAGCGATTCCACAAGAAGGCTAAGTTGCGTGACAGTTGGTTAARATCAGTTCAAGTAGTACTGGAAGAGATGGAACATGGACGCAGTGCGTCTCAAGTCGAGAAAACTTTGAAGAAACAACAAGCCATCTCTACTGATATTCTGGCTCGTGAAGACCGTTTCAAGATGCTGACCGCAATGTGCAATGAGTTATGCACTGAGAAATATCACGAATCTGAAAAGATTCGTGGAATGGAAAGAGAGATAATCGACCGTTGGACTCAGCTGCTGGCGTTGCTGGAGCAACGTAAGCGTGCTCTGATGAGTCTCAATGATTTGATGTCACTGCTTCGCGACATTGATACCCTTTCCAACGAACTGTACTCTCTTGAACCAGCTGTCAGAAATCGTGATGTTGGAAAACATCTTATCGGCGTTGAAGATCTTCTTGGAAAACACGATCTAGTTGATGCTCAAATCAATGCACATGGATCTCTTCTCTCCAAACTTTCACAAGCTGCCAATAACTACATTCGTCACAAAGAAGAACAATTTGATGTTCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTCAAAGACAGGAGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TCAGATTCGTGATATTTCTCAGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCTTCAAAGACAGGAGAAGTTGGAACAACTCGCTCAGCGATTCCACAAGAAGGCTAAGTTGCGTGACAGTTGGTTAAAATCAGTTCAAGTAGTACTGGAAGAGATGGAACATGGACGCAGTGCGTCTCAAGTCGAGAAAACTTTGAAGAAACAACAAGCCATCTCTACTGATATTCTGGCTCGTGAAGACCGTTTCAAGATGCTGACCGCAATGTGCAATGAGTTATGCACTGAGAAATATCACGAATCTGA</canonical_amplicon>
		<polymorphic_amplicon>GCTTCAAAGACAGGAGAAGTTGGAACAACTCGCTCAGCGATTCCACAAGAAGGCTAAGTTGCGTGACAGTTGGTTAARATCAGTTCAAGTAGTACTGGAAGAGATGGAACATGGACGCAGTGCGTCTCAAGTCGAGAAAACTTTGAAGAAACAACAAGCCATCTCTACTGATATTCTGGCTCGTGAAGACCGTTTCAAGATGCTGACCGCAATGTGCAATGAGTTATGCACTGAGAAATATCACGAATCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb212</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1121873</contig_pos>
        <strand>+</strand>
        <context>AAGTTGAAAA[C/T]TTGTATTCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGACATAAACAGATCATGTGACAATGAATGGACCAGGTCAAAGTTGAAAA</left_flank>
        <right_flank>TTGTATTCTAGTGAAGTTATTGAAAAAAATTGTGAATGTGTTTGGAACAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTCCACCTTTAGCTATCTAAGGCAGTGGTCAACAGGCTAGAGGTTTGTTGTGAGTATACGCCCCCTTCTCTTCTCTTTCTTTCAAACCCACACACACACACACACAGCAGGCTAGTGAGAGTCTTCGGAAAAAGAAGAGAGCAGTATACTTGTCATTGCCTTTTCTTTAGCGTTTCGGGCGTGCCCCATTGGCGCAGTCGGTTAGCGCGTGGTACTTATAGTCTATAGGTTATGCCAAGGTCGCCAGTTCGAGCCTGGCATGGGGCAGATTTCTTTTGATTTTTTTGCTCTGGCAAACTCCGTTGGAGCGGAGTCTCTAACCTGTCTCTGATGTGTGTTACGTAATATCGGTGCCTCTTGGAAATGATCTTCTACGAAAAATCAGTGATAAGGAGGGAGCACAGATAAAGCGATCATTGACGTATGCGATTCGCTTTAATAATTTTTTGACATAAACAGATCATGTGACAATGAATGGACCAGGTCAAAGTTGAAAATTTGTATTCTAGTGAAGTTATTGAAAAAAATTGTGAATGTGTTTGGAACATTTTAAGAAGGAAAAATTATAAGAAGAGTCTGAAGATAGAGTAGAGAGCCACCCAACCCGTCAGCTTCGAGTCCACATATCTCGGTTCCTGTGAAAGATATCAAAAAGTAATCAACTGACGGAATATTTTCGTTTTTATTATAAACATTCTTTCTGTAGACTATTTTTTGATATCTTTTACATACACCGAGATATATGGGTTCAAAGTTGGCGGTTTGGAATGACGTTCAATTAGAGTGTTTACGGTAATTGTTTCAGTAAATTACTTCAAATTTTCAAGACTTCGTTGAAGTGAAGTTCAAATTTGGTCAAATCTCGGATTCCGTCTGATCAGGACACTATTTAGTGCAGGATTATACGTCCACCAATGTTTTGGGTCATAACTTGAGAACCAATAGAGGTATCAATTTGAAATTGTCTGAATTGTATTCAGGTCAAAAATTACAAAAAA</canonical>
            <polymorphic>TCTTCCACCTTTAGCTATCTAAGGCAGTGGTCAACAGGCTAGAGGTTTGTTGTGAGTATACGCCCCCTTCTCTTCTCTTTCTTTCAAACCCACACACACACACACACAGCAGGCTAGTGAGAGTCTTCGGAAAAAGAAGAGAGCAGTATACTTGTCATTGCCTTTTCTTTAGCGTTTCGGGCGTGCCCCATTGGCGCAGTCGGTTAGCGCGTGGTACTTATAGTCTATAGGTTATGCCAAGGTCGCCAGTTCGAGCCTGGCATGGGGCAGATTTCTTTTGATTTTTTTGCTCTGGCAAACTCCGTTGGAGCGGAGTCTCTAACCTGTCTCTGATGTGTGTTACGTAATATCGGTGCCTCTTGGAAATGATCTTCTACGAAAAATCAGTGATAAGGAGGGAGCACAGATAAAGCGATCATTGACGTATGCGATTCGCTTTAATAATTTTTTGACATAAACAGATCATGTGACAATGAATGGACCAGGTCAAAGTTGAAAAYTTGTATTCTAGTGAAGTTATTGAAAAAAATTGTGAATGTGTTTGGAACATTTTAAGAAGGAAAAATTATAAGAAGAGTCTGAAGATAGAGTAGAGAGCCACCCAACCCGTCAGCTTCGAGTCCACATATCTCGGTTCCTGTGAAAGATATCAAAAAGTAATCAACTGACGGAATATTTTCGTTTTTATTATAAACATTCTTTCTGTAGACTATTTTTTGATATCTTTTACATACACCGAGATATATGGGTTCAAAGTTGGCGGTTTGGAATGACGTTCAATTAGAGTGTTTACGGTAATTGTTTCAGTAAATTACTTCAAATTTTCAAGACTTCGTTGAAGTGAAGTTCAAATTTGGTCAAATCTCGGATTCCGTCTGATCAGGACACTATTTAGTGCAGGATTATACGTCCACCAATGTTTTGGGTCATAACTTGAGAACCAATAGAGGTATCAATTTGAAATTGTCTGAATTGTATTCAGGTCAAAAATTACAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>497 322 150 31</canonical_bands>
                <polymorphic_bands>819 150 31</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>442 215 104 55 36 31 30 18 18 13 12 10 9 7</canonical_bands>
                <polymorphic_bands>442 215 104 85 36 31 18 18 13 12 10 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCTAACCTGTCTCTGATGTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCCTTCTTAAAATGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTCTAACCTGTCTCTGATGTGTGTTACGTAATATCGGTGCCTCTTGGAAATGATCTTCTACGAAAAATCAGTGATAAGGAGGGAGCACAGATAAAGCGATCATTGACGTATGCGATTCGCTTTAATAATTTTTTGACATAAACAGATCATGTGACAATGAATGGACCAGGTCAAAGTTGAAAATTTGTATTCTAGTGAAGTTATTGAAAAAAATTGTGAATGTGTTTGGAACATTTTAAGAAGGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TCTCTAACCTGTCTCTGATGTGTGTTACGTAATATCGGTGCCTCTTGGAAATGATCTTCTACGAAAAATCAGTGATAAGGAGGGAGCACAGATAAAGCGATCATTGACGTATGCGATTCGCTTTAATAATTTTTTGACATAAACAGATCATGTGACAATGAATGGACCAGGTCAAAGTTGAAAAYTTGTATTCTAGTGAAGTTATTGAAAAAAATTGTGAATGTGTTTGGAACATTTTAAGAAGGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb213</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1124124</contig_pos>
        <strand></strand>
        <context>CTTGAGAAGG[T/G]AAACCTGTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGG</left_flank>
        <right_flank>AAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGAC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCACTCTTGCCAAGCTGGATATCCACTTACCTACACACAAGATCTTCACTTCGGACAATCCGCCTACGCTGTATCCAAGAAGCCAGCTGAGATCCAGAAGGAAATCATGACCCACGGACCAGTAGAGGTTGCTTTCACCGTCTACGAGGACTTTGAGCACTATTCTGGAGGAGTCTATGTCCATACCGCTGGAGCCAGTCTCGGAGGACATGCCGTCAAGATGCTCGGATGGGGAGTTGACAACGGAACTCCATATTGGCTCTGTGCCAACTCATGGAACGAGGATTGGGGAGAGAACGGATATTTCCGTATCATTCGTGGAGTCAACGAGTGCGGAATTGAATCTGGAGTTGTTGGAGGAACACCAAAGTTGTAAACTCTCGAATGGTTGTAATTTTAATGTGTATTGTACAATATGTATTCAAATATCTAATAAAAGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAATTGTTCGCCTTACGGTATTTTCCTTTAGAGATCGGTCGGTTTCATACAAACATACCAGAGATGCATGGACAGTCCGTTGTCGGTTATCTGTTGAAAAAATTTCGTCCGTCCGTTTTCCGGAACGATTGAAATTGAAAATTTCTCCCGGAAGAGCTGAAAATGGTGGATGAGCTTTGTTTTGTTTCCATCTCTAATTCCGTCGTTAATCTTTTTTTTAATTGCTAGTGGATTTTGAAAAATGTGTTCGTTGTCCGGCTGTTGTCCGCCAGAAAAGTGTGTCTTTGCTTGTTGT</canonical>
            <polymorphic>GCACTCTTGCCAAGCTGGATATCCACTTACCTACACACAAGATCTTCACTTCGGACAATCCGCCTACGCTGTATCCAAGAAGCCAGCTGAGATCCAGAAGGAAATCATGACCCACGGACCAGTAGAGGTTGCTTTCACCGTCTACGAGGACTTTGAGCACTATTCTGGAGGAGTCTATGTCCATACCGCTGGAGCCAGTCTCGGAGGACATGCCGTCAAGATGCTCGGATGGGGAGTTGACAACGGAACTCCATATTGGCTCTGTGCCAACTCATGGAACGAGGATTGGGGAGAGAACGGATATTTCCGTATCATTCGTGGAGTCAACGAGTGCGGAATTGAATCTGGAGTTGTTGGAGGAACACCAAAGTTGTAAACTCTCGAATGGTTGTAATTTTAATGTGTATTGTACAATATGTATTCAAATATCTAATAAAAGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGKAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAATTGTTCGCCTTACGGTATTTTCCTTTAGAGATCGGTCGGTTTCATACAAACATACCAGAGATGCATGGACAGTCCGTTGTCGGTTATCTGTTGAAAAAATTTCGTCCGTCCGTTTTCCGGAACGATTGAAATTGAAAATTTCTCCCGGAAGAGCTGAAAATGGTGGATGAGCTTTGTTTTGTTTCCATCTCTAATTCCGTCGTTAATCTTTTTTTTAATTGCTAGTGGATTTTGAAAAATGTGTTCGTTGTCCGGCTGTTGTCCGCCAGAAAAGTGTGTCTTTGCTTGTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>432 142 126 96 87 67 50</canonical_bands>
                <polymorphic_bands>432 193 142 96 87 50</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAATATCTAATAAAAGTTGGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTATCAATTACCATAACGCTCT</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>TCAAATATCTAATAAAAGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAA</canonical_amplicon>
		<polymorphic_amplicon>TCAAATATCTAATAAAAGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGKAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb214</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1124112</contig_pos>
        <strand></strand>
        <context>TAAAGCGAAA[T/G]TCTTGAGAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAA</left_flank>
        <right_flank>TCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTC</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACAAGTGTGAGCACTCTTGCCAAGCTGGATATCCACTTACCTACACACAAGATCTTCACTTCGGACAATCCGCCTACGCTGTATCCAAGAAGCCAGCTGAGATCCAGAAGGAAATCATGACCCACGGACCAGTAGAGGTTGCTTTCACCGTCTACGAGGACTTTGAGCACTATTCTGGAGGAGTCTATGTCCATACCGCTGGAGCCAGTCTCGGAGGACATGCCGTCAAGATGCTCGGATGGGGAGTTGACAACGGAACTCCATATTGGCTCTGTGCCAACTCATGGAACGAGGATTGGGGAGAGAACGGATATTTCCGTATCATTCGTGGAGTCAACGAGTGCGGAATTGAATCTGGAGTTGTTGGAGGAACACCAAAGTTGTAAACTCTCGAATGGTTGTAATTTTAATGTGTATTGTACAATATGTATTCAAATATCTAATAAAAGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAATTGTTCGCCTTACGGTATTTTCCTTTAGAGATCGGTCGGTTTCATACAAACATACCAGAGATGCATGGACAGTCCGTTGTCGGTTATCTGTTGAAAAAATTTCGTCCGTCCGTTTTCCGGAACGATTGAAATTGAAAATTTCTCCCGGAAGAGCTGAAAATGGTGGATGAGCTTTGTTTTGTTTCCATCTCTAATTCCGTCGTTAATCTTTTTTTTAATTGCTAGTGGATTTTGAAAAATGTGTTCGTTGTCCGGCTGTTGTCCGCCAGAAAAGTGTGTC</canonical>
            <polymorphic>TGACAAGTGTGAGCACTCTTGCCAAGCTGGATATCCACTTACCTACACACAAGATCTTCACTTCGGACAATCCGCCTACGCTGTATCCAAGAAGCCAGCTGAGATCCAGAAGGAAATCATGACCCACGGACCAGTAGAGGTTGCTTTCACCGTCTACGAGGACTTTGAGCACTATTCTGGAGGAGTCTATGTCCATACCGCTGGAGCCAGTCTCGGAGGACATGCCGTCAAGATGCTCGGATGGGGAGTTGACAACGGAACTCCATATTGGCTCTGTGCCAACTCATGGAACGAGGATTGGGGAGAGAACGGATATTTCCGTATCATTCGTGGAGTCAACGAGTGCGGAATTGAATCTGGAGTTGTTGGAGGAACACCAAAGTTGTAAACTCTCGAATGGTTGTAATTTTAATGTGTATTGTACAATATGTATTCAAATATCTAATAAAAGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAAKTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAATTGTTCGCCTTACGGTATTTTCCTTTAGAGATCGGTCGGTTTCATACAAACATACCAGAGATGCATGGACAGTCCGTTGTCGGTTATCTGTTGAAAAAATTTCGTCCGTCCGTTTTCCGGAACGATTGAAATTGAAAATTTCTCCCGGAAGAGCTGAAAATGGTGGATGAGCTTTGTTTTGTTTCCATCTCTAATTCCGTCGTTAATCTTTTTTTTAATTGCTAGTGGATTTTGAAAAATGTGTTCGTTGTCCGGCTGTTGTCCGCCAGAAAAGTGTGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>475 320 144 39 22</canonical_bands>
                <polymorphic_bands>475 342 144 39</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>348 169 99 71 64 56 56 44 32 24 22 8 7</canonical_bands>
                <polymorphic_bands>348 169 99 71 66 64 56 56 32 24 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAATATCTAATAAAAGTTGGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTATCAATTACCATAACGCTCT</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>TCAAATATCTAATAAAAGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAA</canonical_amplicon>
		<polymorphic_amplicon>TCAAATATCTAATAAAAGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAAKTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb216</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1124601</contig_pos>
        <strand>+</strand>
        <context>TTGTCCGCCA[A/G]AAAAGTGTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGCTAGTGGATTTTGAAAAATGTGTTCGTTGTCCGGCTGTTGTCCGCCA</left_flank>
        <right_flank>AAAAGTGTGTCTTTGCTTGTTGTCCGAACAATTAAAAAAAAACAGAAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAATTGTTCGCCTTACGGTATTTTCCTTTAGAGATCGGTCGGTTTCATACAAACATACCAGAGATGCATGGACAGTCCGTTGTCGGTTATCTGTTGAAAAAATTTCGTCCGTCCGTTTTCCGGAACGATTGAAATTGAAAATTTCTCCCGGAAGAGCTGAAAATGGTGGATGAGCTTTGTTTTGTTTCCATCTCTAATTCCGTCGTTAATCTTTTTTTTAATTGCTAGTGGATTTTGAAAAATGTGTTCGTTGTCCGGCTGTTGTCCGCCAGAAAAGTGTGTCTTTGCTTGTTGTCCGAACAATTAAAAAAAAACAGAAAAATAAAAAATATTGGGAAAATAAAATAAAAATTCAAGGGTGGGAGACAGGAGATTTTTAGGAAGAATTTTGGAGCCAGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATATTGTACAACGCTTAATACAACGCTTAATATTAATATTACATTAATGTCACTCTACGTACACCGGTCGTCCTCACCCTTATGTATGCAATCGGGAGGCCTTTTTACCTTTGCCCGCGTGGCTCAGTCGGTGGCGGCGCCGTACCCTCAATCCTCGCCTCCACAAGTTCAACTCCCCGAGGGGCATATTTGAACAGAATTGCGATAACATTATTTTTCTCATGTCCCCCCGCCTTTAAAGCCTTTTTCTAATCAATTGAAGATATTATTGAAGTATTAGCATAACAAGAAAACTATCGAAACTCTAACACTTGAAAAAAGTTGCTTCTGATACTGGAC</canonical>
            <polymorphic>TAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAATTGTTCGCCTTACGGTATTTTCCTTTAGAGATCGGTCGGTTTCATACAAACATACCAGAGATGCATGGACAGTCCGTTGTCGGTTATCTGTTGAAAAAATTTCGTCCGTCCGTTTTCCGGAACGATTGAAATTGAAAATTTCTCCCGGAAGAGCTGAAAATGGTGGATGAGCTTTGTTTTGTTTCCATCTCTAATTCCGTCGTTAATCTTTTTTTTAATTGCTAGTGGATTTTGAAAAATGTGTTCGTTGTCCGGCTGTTGTCCGCCARAAAAGTGTGTCTTTGCTTGTTGTCCGAACAATTAAAAAAAAACAGAAAAATAAAAAATATTGGGAAAATAAAATAAAAATTCAAGGGTGGGAGACAGGAGATTTTTAGGAAGAATTTTGGAGCCAGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATATTGTACAACGCTTAATACAACGCTTAATATTAATATTACATTAATGTCACTCTACGTACACCGGTCGTCCTCACCCTTATGTATGCAATCGGGAGGCCTTTTTACCTTTGCCCGCGTGGCTCAGTCGGTGGCGGCGCCGTACCCTCAATCCTCGCCTCCACAAGTTCAACTCCCCGAGGGGCATATTTGAACAGAATTGCGATAACATTATTTTTCTCATGTCCCCCCGCCTTTAAAGCCTTTTTCTAATCAATTGAAGATATTATTGAAGTATTAGCATAACAAGAAAACTATCGAAACTCTAACACTTGAAAAAAGTTGCTTCTGATACTGGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTAATTGCTAGTGGATTTTG</pcr_primer_p1>
		<pcr_primer_p2>AGCGTTGTATTAAGCGTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTTTAATTGCTAGTGGATTTTGAAAAATGTGTTCGTTGTCCGGCTGTTGTCCGCCAGAAAAGTGTGTCTTTGCTTGTTGTCCGAACAATTAAAAAAAAACAGAAAAATAAAAAATATTGGGAAAATAAAATAAAAATTCAAGGGTGGGAGACAGGAGATTTTTAGGAAGAATTTTGGAGCCAGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATATTGTACAACGCTTAATACAACGCT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTAATTGCTAGTGGATTTTGAAAAATGTGTTCGTTGTCCGGCTGTTGTCCGCCARAAAAGTGTGTCTTTGCTTGTTGTCCGAACAATTAAAAAAAAACAGAAAAATAAAAAATATTGGGAAAATAAAATAAAAATTCAAGGGTGGGAGACAGGAGATTTTTAGGAAGAATTTTGGAGCCAGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATATTGTACAACGCTTAATACAACGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb217</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1124309</contig_pos>
        <strand>+</strand>
        <context>GGGCTTCTAT[C/G]AGAGCGTTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTAT</left_flank>
        <right_flank>AGAGCGTTATGGTAATTGATAAATTGTTCGCCTTACGGTATTTTCCTTTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGCTGGAGCCAGTCTCGGAGGACATGCCGTCAAGATGCTCGGATGGGGAGTTGACAACGGAACTCCATATTGGCTCTGTGCCAACTCATGGAACGAGGATTGGGGAGAGAACGGATATTTCCGTATCATTCGTGGAGTCAACGAGTGCGGAATTGAATCTGGAGTTGTTGGAGGAACACCAAAGTTGTAAACTCTCGAATGGTTGTAATTTTAATGTGTATTGTACAATATGTATTCAAATATCTAATAAAAGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAATTGTTCGCCTTACGGTATTTTCCTTTAGAGATCGGTCGGTTTCATACAAACATACCAGAGATGCATGGACAGTCCGTTGTCGGTTATCTGTTGAAAAAATTTCGTCCGTCCGTTTTCCGGAACGATTGAAATTGAAAATTTCTCCCGGAAGAGCTGAAAATGGTGGATGAGCTTTGTTTTGTTTCCATCTCTAATTCCGTCGTTAATCTTTTTTTTAATTGCTAGTGGATTTTGAAAAATGTGTTCGTTGTCCGGCTGTTGTCCGCCAGAAAAGTGTGTCTTTGCTTGTTGTCCGAACAATTAAAAAAAAACAGAAAAATAAAAAATATTGGGAAAATAAAATAAAAATTCAAGGGTGGGAGACAGGAGATTTTTAGGAAGAATTTTGGAGCCAGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATATTGTACAACGCTTAATACAACGCTTAATATTAATATTACATTAA</canonical>
            <polymorphic>CCGCTGGAGCCAGTCTCGGAGGACATGCCGTCAAGATGCTCGGATGGGGAGTTGACAACGGAACTCCATATTGGCTCTGTGCCAACTCATGGAACGAGGATTGGGGAGAGAACGGATATTTCCGTATCATTCGTGGAGTCAACGAGTGCGGAATTGAATCTGGAGTTGTTGGAGGAACACCAAAGTTGTAAACTCTCGAATGGTTGTAATTTTAATGTGTATTGTACAATATGTATTCAAATATCTAATAAAAGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATSAGAGCGTTATGGTAATTGATAAATTGTTCGCCTTACGGTATTTTCCTTTAGAGATCGGTCGGTTTCATACAAACATACCAGAGATGCATGGACAGTCCGTTGTCGGTTATCTGTTGAAAAAATTTCGTCCGTCCGTTTTCCGGAACGATTGAAATTGAAAATTTCTCCCGGAAGAGCTGAAAATGGTGGATGAGCTTTGTTTTGTTTCCATCTCTAATTCCGTCGTTAATCTTTTTTTTAATTGCTAGTGGATTTTGAAAAATGTGTTCGTTGTCCGGCTGTTGTCCGCCAGAAAAGTGTGTCTTTGCTTGTTGTCCGAACAATTAAAAAAAAACAGAAAAATAAAAAATATTGGGAAAATAAAATAAAAATTCAAGGGTGGGAGACAGGAGATTTTTAGGAAGAATTTTGGAGCCAGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATATTGTACAACGCTTAATACAACGCTTAATATTAATATTACATTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>316 312 183 147 24 18</canonical_bands>
                <polymorphic_bands>463 312 183 24 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAATATCTAATAAAAGTTGGAAAC</pcr_primer_p1>
		<pcr_primer_p2>GATCTCTAAAGGAAAATACCGTAA</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>TCAAATATCTAATAAAAGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAATTGTTCGCCTTACGGTATTTTCCTTTAGAGATC</canonical_amplicon>
		<polymorphic_amplicon>TCAAATATCTAATAAAAGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATSAGAGCGTTATGGTAATTGATAAATTGTTCGCCTTACGGTATTTTCCTTTAGAGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb218</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1124265</contig_pos>
        <strand></strand>
        <context>acttatggga[G/A]ccgaaataaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGA</left_flank>
        <right_flank>CCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTACGAGGACTTTGAGCACTATTCTGGAGGAGTCTATGTCCATACCGCTGGAGCCAGTCTCGGAGGACATGCCGTCAAGATGCTCGGATGGGGAGTTGACAACGGAACTCCATATTGGCTCTGTGCCAACTCATGGAACGAGGATTGGGGAGAGAACGGATATTTCCGTATCATTCGTGGAGTCAACGAGTGCGGAATTGAATCTGGAGTTGTTGGAGGAACACCAAAGTTGTAAACTCTCGAATGGTTGTAATTTTAATGTGTATTGTACAATATGTATTCAAATATCTAATAAAAGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAATTGTTCGCCTTACGGTATTTTCCTTTAGAGATCGGTCGGTTTCATACAAACATACCAGAGATGCATGGACAGTCCGTTGTCGGTTATCTGTTGAAAAAATTTCGTCCGTCCGTTTTCCGGAACGATTGAAATTGAAAATTTCTCCCGGAAGAGCTGAAAATGGTGGATGAGCTTTGTTTTGTTTCCATCTCTAATTCCGTCGTTAATCTTTTTTTTAATTGCTAGTGGATTTTGAAAAATGTGTTCGTTGTCCGGCTGTTGTCCGCCAGAAAAGTGTGTCTTTGCTTGTTGTCCGAACAATTAAAAAAAAACAGAAAAATAAAAAATATTGGGAAAATAAAATAAAAATTCAAGGGTGGGAGACAGGAGATTTTTAGGAAGAATTTTGGAGCCAGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATA</canonical>
            <polymorphic>CTACGAGGACTTTGAGCACTATTCTGGAGGAGTCTATGTCCATACCGCTGGAGCCAGTCTCGGAGGACATGCCGTCAAGATGCTCGGATGGGGAGTTGACAACGGAACTCCATATTGGCTCTGTGCCAACTCATGGAACGAGGATTGGGGAGAGAACGGATATTTCCGTATCATTCGTGGAGTCAACGAGTGCGGAATTGAATCTGGAGTTGTTGGAGGAACACCAAAGTTGTAAACTCTCGAATGGTTGTAATTTTAATGTGTATTGTACAATATGTATTCAAATATCTAATAAAAGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGARCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAATTGTTCGCCTTACGGTATTTTCCTTTAGAGATCGGTCGGTTTCATACAAACATACCAGAGATGCATGGACAGTCCGTTGTCGGTTATCTGTTGAAAAAATTTCGTCCGTCCGTTTTCCGGAACGATTGAAATTGAAAATTTCTCCCGGAAGAGCTGAAAATGGTGGATGAGCTTTGTTTTGTTTCCATCTCTAATTCCGTCGTTAATCTTTTTTTTAATTGCTAGTGGATTTTGAAAAATGTGTTCGTTGTCCGGCTGTTGTCCGCCAGAAAAGTGTGTCTTTGCTTGTTGTCCGAACAATTAAAAAAAAACAGAAAAATAAAAAATATTGGGAAAATAAAATAAAAATTCAAGGGTGGGAGACAGGAGATTTTTAGGAAGAATTTTGGAGCCAGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>267 184 136 115 84 65 53 42 36 18</canonical_bands>
                <polymorphic_bands>267 184 151 136 84 65 53 42 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAATATCTAATAAAAGTTGGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTATCAATTACCATAACGCTCT</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>TCAAATATCTAATAAAAGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAA</canonical_amplicon>
		<polymorphic_amplicon>TCAAATATCTAATAAAAGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGARCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb219</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1124250</contig_pos>
        <strand></strand>
        <context>caggttttag[G/A]catcacttat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAG</left_flank>
        <right_flank>CATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTGCTTTCACCGTCTACGAGGACTTTGAGCACTATTCTGGAGGAGTCTATGTCCATACCGCTGGAGCCAGTCTCGGAGGACATGCCGTCAAGATGCTCGGATGGGGAGTTGACAACGGAACTCCATATTGGCTCTGTGCCAACTCATGGAACGAGGATTGGGGAGAGAACGGATATTTCCGTATCATTCGTGGAGTCAACGAGTGCGGAATTGAATCTGGAGTTGTTGGAGGAACACCAAAGTTGTAAACTCTCGAATGGTTGTAATTTTAATGTGTATTGTACAATATGTATTCAAATATCTAATAAAAGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAATTGTTCGCCTTACGGTATTTTCCTTTAGAGATCGGTCGGTTTCATACAAACATACCAGAGATGCATGGACAGTCCGTTGTCGGTTATCTGTTGAAAAAATTTCGTCCGTCCGTTTTCCGGAACGATTGAAATTGAAAATTTCTCCCGGAAGAGCTGAAAATGGTGGATGAGCTTTGTTTTGTTTCCATCTCTAATTCCGTCGTTAATCTTTTTTTTAATTGCTAGTGGATTTTGAAAAATGTGTTCGTTGTCCGGCTGTTGTCCGCCAGAAAAGTGTGTCTTTGCTTGTTGTCCGAACAATTAAAAAAAAACAGAAAAATAAAAAATATTGGGAAAATAAAATAAAAATTCAAGGGTGGGAGACAGGAGATTTTTAGGAAGAATTTTGGAGCCAGGGTATGCATTCTACCGTAACGGT</canonical>
            <polymorphic>GGTTGCTTTCACCGTCTACGAGGACTTTGAGCACTATTCTGGAGGAGTCTATGTCCATACCGCTGGAGCCAGTCTCGGAGGACATGCCGTCAAGATGCTCGGATGGGGAGTTGACAACGGAACTCCATATTGGCTCTGTGCCAACTCATGGAACGAGGATTGGGGAGAGAACGGATATTTCCGTATCATTCGTGGAGTCAACGAGTGCGGAATTGAATCTGGAGTTGTTGGAGGAACACCAAAGTTGTAAACTCTCGAATGGTTGTAATTTTAATGTGTATTGTACAATATGTATTCAAATATCTAATAAAAGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGRCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAATTGTTCGCCTTACGGTATTTTCCTTTAGAGATCGGTCGGTTTCATACAAACATACCAGAGATGCATGGACAGTCCGTTGTCGGTTATCTGTTGAAAAAATTTCGTCCGTCCGTTTTCCGGAACGATTGAAATTGAAAATTTCTCCCGGAAGAGCTGAAAATGGTGGATGAGCTTTGTTTTGTTTCCATCTCTAATTCCGTCGTTAATCTTTTTTTTAATTGCTAGTGGATTTTGAAAAATGTGTTCGTTGTCCGGCTGTTGTCCGCCAGAAAAGTGTGTCTTTGCTTGTTGTCCGAACAATTAAAAAAAAACAGAAAAATAAAAAATATTGGGAAAATAAAATAAAAATTCAAGGGTGGGAGACAGGAGATTTTTAGGAAGAATTTTGGAGCCAGGGTATGCATTCTACCGTAACGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAATATCTAATAAAAGTTGGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTATCAATTACCATAACGCTCT</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>TCAAATATCTAATAAAAGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAA</canonical_amplicon>
		<polymorphic_amplicon>TCAAATATCTAATAAAAGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGRCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb220</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1427765</contig_pos>
        <strand>+</strand>
        <context>CAGCCACTTC[A/T]GCGGCGATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACCTCCGCATTGAACTTTTCCTTGGCACTCGTTGTTCACCAGCCACTTC</left_flank>
        <right_flank>GCGGCGATTGCTACGTCTGGAAACTCGAAGTCGTCGCCAATCTGAAAAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGTCGTGTTTTGATCGAGATTGATGCTAGCACAGTTATAGGAATTCAGTTTTTCGCGACTACTCGAGAGGGGATTTGAAAAAAGCTGGTTTGCAAATCACTAAAAATATTGGGAATTTGGATCAAATGAAATCGTACAAAATGGAAAGTAAAAGTTTCATGAAAACCGGCAACACTTTTTTATGGTCGCATCGACAGTGTTCTAAACATTTTATGATAAACCACAAACCTGGATAAGACTGCTTGCTGCACTCTTATAACATTGGAAAGCCAACTCATATGCGTGCTCTTCCTCGGCTCTTTGAGCGGTTGCCACTAGTTTCCCAGCGGTCACCAAGTAGTCTGCGGCTGGTTCTTCGATTTCTGAAGCATGGATCTTTTGGAATACTCAAAGCACTTTGCTATTCTACCGATATGCTGATTATGACCTCCTCTTAATCGAGGAAACAACCTCCGCATTGAACTTTTCCTTGGCACTCGTTGTTCACCAGCCACTTCAGCGGCGATTGCTACGTCTGGAAACTCGAAGTCGTCGCCAATCTGAAAAAGTGATTTTATCTTTATGTGTCAAGGAGTAAGATAGAAAAAATTCATAAATTTTATTTTGATTAGAGCTCTGGGATACATGGCGATGCTATAAATGGAACAGAAAACGCATATTGAATATGACAAGCTGAAGAAGTGAGTCACTAGTGAAACGAAAAGGGAAGCCGGAACTTAATTAGAATTTAGCGAATGGAACTGACTTGCTCGTGTGTTGGCTCCAGAGGTGAGACGTGATTTGGAGAATCGGAGTCGCTGAAAATAAAGAATGAGTTGGGGAAAGAACTGTAAATATATACCTGGAATGGCTATTGGGCTGGTCTAGAATAGACGAAGAATTGTCATAGAACACTTCGTTGCCAGTGATTTCGTAGGCAATGTACGTCTTCTCCTTTGCTTTCTGGAAGTTTTAAAGTTTTTTAAAAGATTCCTAGCAGAAGTGAAATGTATAACATG</canonical>
            <polymorphic>ATTGTCGTGTTTTGATCGAGATTGATGCTAGCACAGTTATAGGAATTCAGTTTTTCGCGACTACTCGAGAGGGGATTTGAAAAAAGCTGGTTTGCAAATCACTAAAAATATTGGGAATTTGGATCAAATGAAATCGTACAAAATGGAAAGTAAAAGTTTCATGAAAACCGGCAACACTTTTTTATGGTCGCATCGACAGTGTTCTAAACATTTTATGATAAACCACAAACCTGGATAAGACTGCTTGCTGCACTCTTATAACATTGGAAAGCCAACTCATATGCGTGCTCTTCCTCGGCTCTTTGAGCGGTTGCCACTAGTTTCCCAGCGGTCACCAAGTAGTCTGCGGCTGGTTCTTCGATTTCTGAAGCATGGATCTTTTGGAATACTCAAAGCACTTTGCTATTCTACCGATATGCTGATTATGACCTCCTCTTAATCGAGGAAACAACCTCCGCATTGAACTTTTCCTTGGCACTCGTTGTTCACCAGCCACTTCWGCGGCGATTGCTACGTCTGGAAACTCGAAGTCGTCGCCAATCTGAAAAAGTGATTTTATCTTTATGTGTCAAGGAGTAAGATAGAAAAAATTCATAAATTTTATTTTGATTAGAGCTCTGGGATACATGGCGATGCTATAAATGGAACAGAAAACGCATATTGAATATGACAAGCTGAAGAAGTGAGTCACTAGTGAAACGAAAAGGGAAGCCGGAACTTAATTAGAATTTAGCGAATGGAACTGACTTGCTCGTGTGTTGGCTCCAGAGGTGAGACGTGATTTGGAGAATCGGAGTCGCTGAAAATAAAGAATGAGTTGGGGAAAGAACTGTAAATATATACCTGGAATGGCTATTGGGCTGGTCTAGAATAGACGAAGAATTGTCATAGAACACTTCGTTGCCAGTGATTTCGTAGGCAATGTACGTCTTCTCCTTTGCTTTCTGGAAGTTTTAAAGTTTTTTAAAAGATTCCTAGCAGAAGTGAAATGTATAACATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>499 328 173</canonical_bands>
                <polymorphic_bands>672 328</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTACCGATATGCTGATTATGAC</pcr_primer_p1>
		<pcr_primer_p2>CGTTTTCTGTTCCATTTATAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTACCGATATGCTGATTATGACCTCCTCTTAATCGAGGAAACAACCTCCGCATTGAACTTTTCCTTGGCACTCGTTGTTCACCAGCCACTTCAGCGGCGATTGCTACGTCTGGAAACTCGAAGTCGTCGCCAATCTGAAAAAGTGATTTTATCTTTATGTGTCAAGGAGTAAGATAGAAAAAATTCATAAATTTTATTTTGATTAGAGCTCTGGGATACATGGCGATGCTATAAATGGAACAGAAAACG</canonical_amplicon>
		<polymorphic_amplicon>TCTACCGATATGCTGATTATGACCTCCTCTTAATCGAGGAAACAACCTCCGCATTGAACTTTTCCTTGGCACTCGTTGTTCACCAGCCACTTCWGCGGCGATTGCTACGTCTGGAAACTCGAAGTCGTCGCCAATCTGAAAAAGTGATTTTATCTTTATGTGTCAAGGAGTAAGATAGAAAAAATTCATAAATTTTATTTTGATTAGAGCTCTGGGATACATGGCGATGCTATAAATGGAACAGAAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb221</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1428182</contig_pos>
        <strand>+</strand>
        <context>GTGATTTCGT[A/G]GGCAATGTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGAATAGACGAAGAATTGTCATAGAACACTTCGTTGCCAGTGATTTCGT</left_flank>
        <right_flank>GGCAATGTACGTCTTCTCCTTTGCTTTCTGGAAGTTTTAAAGTTTTTTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTGATTATGACCTCCTCTTAATCGAGGAAACAACCTCCGCATTGAACTTTTCCTTGGCACTCGTTGTTCACCAGCCACTTCAGCGGCGATTGCTACGTCTGGAAACTCGAAGTCGTCGCCAATCTGAAAAAGTGATTTTATCTTTATGTGTCAAGGAGTAAGATAGAAAAAATTCATAAATTTTATTTTGATTAGAGCTCTGGGATACATGGCGATGCTATAAATGGAACAGAAAACGCATATTGAATATGACAAGCTGAAGAAGTGAGTCACTAGTGAAACGAAAAGGGAAGCCGGAACTTAATTAGAATTTAGCGAATGGAACTGACTTGCTCGTGTGTTGGCTCCAGAGGTGAGACGTGATTTGGAGAATCGGAGTCGCTGAAAATAAAGAATGAGTTGGGGAAAGAACTGTAAATATATACCTGGAATGGCTATTGGGCTGGTCTAGAATAGACGAAGAATTGTCATAGAACACTTCGTTGCCAGTGATTTCGTAGGCAATGTACGTCTTCTCCTTTGCTTTCTGGAAGTTTTAAAGTTTTTTAAAAGATTCCTAGCAGAAGTGAAATGTATAACATGCATCTCTTTTGTTGGAAAAGAAAAGCAGAATGCGTGTAAGTGACATCATCAGTCTCTTCTCGTCCGCTCTCTGCGGACCCTGTTTCTCTCTAAATCTCCTCTGCTCACGCATTGAAATGCTTCTCCCTTACCTCAACAAATTCATGCAAAAGACGGGATTTGCGAAGAACTTCACTGTCGAACACGAAATTTAGACACGCCTCGATGCCGTGACGACGTTCTTGAATCACTGCAGGGTCGGCTGTAAATTAGAAAAAATCAGAATTAAGAGGGATAACAGATCCAATACCAGATCCAATAAGTTTTGCAGGTGGAAACACGGGAAACGTCCCTCGAAGATATAGTTGTTTGTGCAGTTTAGAGATGGCCGCATGGAGTTTTGCCATTTCTTTGAATCTCGTGCTCAGAATGAAAATT</canonical>
            <polymorphic>GCTGATTATGACCTCCTCTTAATCGAGGAAACAACCTCCGCATTGAACTTTTCCTTGGCACTCGTTGTTCACCAGCCACTTCAGCGGCGATTGCTACGTCTGGAAACTCGAAGTCGTCGCCAATCTGAAAAAGTGATTTTATCTTTATGTGTCAAGGAGTAAGATAGAAAAAATTCATAAATTTTATTTTGATTAGAGCTCTGGGATACATGGCGATGCTATAAATGGAACAGAAAACGCATATTGAATATGACAAGCTGAAGAAGTGAGTCACTAGTGAAACGAAAAGGGAAGCCGGAACTTAATTAGAATTTAGCGAATGGAACTGACTTGCTCGTGTGTTGGCTCCAGAGGTGAGACGTGATTTGGAGAATCGGAGTCGCTGAAAATAAAGAATGAGTTGGGGAAAGAACTGTAAATATATACCTGGAATGGCTATTGGGCTGGTCTAGAATAGACGAAGAATTGTCATAGAACACTTCGTTGCCAGTGATTTCGTRGGCAATGTACGTCTTCTCCTTTGCTTTCTGGAAGTTTTAAAGTTTTTTAAAAGATTCCTAGCAGAAGTGAAATGTATAACATGCATCTCTTTTGTTGGAAAAGAAAAGCAGAATGCGTGTAAGTGACATCATCAGTCTCTTCTCGTCCGCTCTCTGCGGACCCTGTTTCTCTCTAAATCTCCTCTGCTCACGCATTGAAATGCTTCTCCCTTACCTCAACAAATTCATGCAAAAGACGGGATTTGCGAAGAACTTCACTGTCGAACACGAAATTTAGACACGCCTCGATGCCGTGACGACGTTCTTGAATCACTGCAGGGTCGGCTGTAAATTAGAAAAAATCAGAATTAAGAGGGATAACAGATCCAATACCAGATCCAATAAGTTTTGCAGGTGGAAACACGGGAAACGTCCCTCGAAGATATAGTTGTTTGTGCAGTTTAGAGATGGCCGCATGGAGTTTTGCCATTTCTTTGAATCTCGTGCTCAGAATGAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTGGTCTAGAATAGACGAAGA</pcr_primer_p1>
		<pcr_primer_p2>GTGAGCAGAGGAGATTTAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTGGTCTAGAATAGACGAAGAATTGTCATAGAACACTTCGTTGCCAGTGATTTCGTAGGCAATGTACGTCTTCTCCTTTGCTTTCTGGAAGTTTTAAAGTTTTTTAAAAGATTCCTAGCAGAAGTGAAATGTATAACATGCATCTCTTTTGTTGGAAAAGAAAAGCAGAATGCGTGTAAGTGACATCATCAGTCTCTTCTCGTCCGCTCTCTGCGGACCCTGTTTCTCTCTAAATCTCCTCTGCTCAC</canonical_amplicon>
		<polymorphic_amplicon>GCTGGTCTAGAATAGACGAAGAATTGTCATAGAACACTTCGTTGCCAGTGATTTCGTRGGCAATGTACGTCTTCTCCTTTGCTTTCTGGAAGTTTTAAAGTTTTTTAAAAGATTCCTAGCAGAAGTGAAATGTATAACATGCATCTCTTTTGTTGGAAAAGAAAAGCAGAATGCGTGTAAGTGACATCATCAGTCTCTTCTCGTCCGCTCTCTGCGGACCCTGTTTCTCTCTAAATCTCCTCTGCTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb222</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1430041</contig_pos>
        <strand>+</strand>
        <context>TGCAGCACGT[A/G]CAGAAATCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGAATCAGTTTTGATATCTCCTGCAGCTGCAGCTAGTCTTGCAGCACGT</left_flank>
        <right_flank>CAGAAATCTTTGCGGCGTCTACTTCCGATCTGAGCTCATTCAATGACTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGTGTACCTACTAAAAACAAAGCAAATCTACTTCTTTCCCCAGAACCATCCTGTGACCATTCCAGAAATTCCCTGTTGACCTTCTCCTTCTTTTGAGGCCGATGTATTTGGAGCAGCAGAACCTCCTTTCCCTGTTTTCTTCGGTGTTTGAGCATCACGATCTTTTTGAAGTTTCTCTAGACGATCCTCAACATCTGGCATCTGGAAATTGCAAAAGTTACTGATTGTATTGTTCAGAATCTTTGTAATAAAAAAAAACAAAACTTACTGTTAGATGGAAATTGGCCAAATCGAAGAAAATTGGCTTATTAGGCATTGGAATGAAAGCTGGTGGAAGGCTTGCCACCGGAATGGTTTTCTTGTCTCTCAACGATTCACGAACATTCCATTGACGCCACTCGTTTACTGTCTCCAAAAGTGGGCGTTCATCGATGGTCTTTGCAACTTCCGAATCAGTTTTGATATCTCCTGCAGCTGCAGCTAGTCTTGCAGCACGTGCAGAAATCTTTGCGGCGTCTACTTCCGATCTGAGCTCATTCAATGACTGTGCGGTCTCATTAGTGATGTAGAAATTAGATTTCAGTTTCTTGAGTTTGCCCTCAGCTTCTTGAATACGGGAAAGAGTCCGATCGAAAAGAGCAGCAGCTTCAGAATATTTATGAAGTGCTGAGTATGAAGAAGACATGTAGAAGCAACGGAAAGCTCTATAGTATTCAACCTTCACTTCGAAAGCCTCAATCAGATTCTTATCGTATTCAGCTCCAGGTGTCTCCGAAACTTCCTTATAGATTTCAATGACCGAATCGTAAAGTCTAAGCAAATCTTGAGGTTTATTCTTCTTTTCGCTCTTTGTGTTATCAATGATAGCCAAGTATCGTGAAGCAGTTCCGTTCATTTTCAAGATTCCAGATATGCCTTGATTGATTGAAGTACAGTTGTATCCGCGTTCTCAGAACTTTTGCGACGAATAATATCCGAAATGCGATCGATAGCGTCTC</canonical>
            <polymorphic>ATAGTGTACCTACTAAAAACAAAGCAAATCTACTTCTTTCCCCAGAACCATCCTGTGACCATTCCAGAAATTCCCTGTTGACCTTCTCCTTCTTTTGAGGCCGATGTATTTGGAGCAGCAGAACCTCCTTTCCCTGTTTTCTTCGGTGTTTGAGCATCACGATCTTTTTGAAGTTTCTCTAGACGATCCTCAACATCTGGCATCTGGAAATTGCAAAAGTTACTGATTGTATTGTTCAGAATCTTTGTAATAAAAAAAAACAAAACTTACTGTTAGATGGAAATTGGCCAAATCGAAGAAAATTGGCTTATTAGGCATTGGAATGAAAGCTGGTGGAAGGCTTGCCACCGGAATGGTTTTCTTGTCTCTCAACGATTCACGAACATTCCATTGACGCCACTCGTTTACTGTCTCCAAAAGTGGGCGTTCATCGATGGTCTTTGCAACTTCCGAATCAGTTTTGATATCTCCTGCAGCTGCAGCTAGTCTTGCAGCACGTRCAGAAATCTTTGCGGCGTCTACTTCCGATCTGAGCTCATTCAATGACTGTGCGGTCTCATTAGTGATGTAGAAATTAGATTTCAGTTTCTTGAGTTTGCCCTCAGCTTCTTGAATACGGGAAAGAGTCCGATCGAAAAGAGCAGCAGCTTCAGAATATTTATGAAGTGCTGAGTATGAAGAAGACATGTAGAAGCAACGGAAAGCTCTATAGTATTCAACCTTCACTTCGAAAGCCTCAATCAGATTCTTATCGTATTCAGCTCCAGGTGTCTCCGAAACTTCCTTATAGATTTCAATGACCGAATCGTAAAGTCTAAGCAAATCTTGAGGTTTATTCTTCTTTTCGCTCTTTGTGTTATCAATGATAGCCAAGTATCGTGAAGCAGTTCCGTTCATTTTCAAGATTCCAGATATGCCTTGATTGATTGAAGTACAGTTGTATCCGCGTTCTCAGAACTTTTGCGACGAATAATATCCGAAATGCGATCGATAGCGTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACGTG</site>
                <isoschizomers>
                    <enzyme>AcvI</enzyme>
                    <enzyme>BbrPI</enzyme>
                    <enzyme>Eco72I</enzyme>
                    <enzyme>PmaCI</enzyme>
                    <enzyme>PmlI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCANNNNNTGC</site>
                <isoschizomers>
                    <enzyme>ApaBI</enzyme>
                    <enzyme>BstAPI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 312 167 9 9</canonical_bands>
                <polymorphic_bands>521 312 167</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 230 213 30 12 9 6</canonical_bands>
                <polymorphic_bands>509 230 213 30 12 6</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>176 119 103 91 86 74 57 51 51 45 32 25 23 20 14 12 11 6 4</canonical_bands>
                <polymorphic_bands>176 119 103 91 86 74 57 55 51 45 32 25 23 20 14 12 11 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGGTTTTCTTGTCTCTCAAC</pcr_primer_p1>
		<pcr_primer_p2>GCAAACTCAAGAAACTGAAATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATGGTTTTCTTGTCTCTCAACGATTCACGAACATTCCATTGACGCCACTCGTTTACTGTCTCCAAAAGTGGGCGTTCATCGATGGTCTTTGCAACTTCCGAATCAGTTTTGATATCTCCTGCAGCTGCAGCTAGTCTTGCAGCACGTGCAGAAATCTTTGCGGCGTCTACTTCCGATCTGAGCTCATTCAATGACTGTGCGGTCTCATTAGTGATGTAGAAATTAGATTTCAGTTTCTTGAGTTTGC</canonical_amplicon>
		<polymorphic_amplicon>AATGGTTTTCTTGTCTCTCAACGATTCACGAACATTCCATTGACGCCACTCGTTTACTGTCTCCAAAAGTGGGCGTTCATCGATGGTCTTTGCAACTTCCGAATCAGTTTTGATATCTCCTGCAGCTGCAGCTAGTCTTGCAGCACGTRCAGAAATCTTTGCGGCGTCTACTTCCGATCTGAGCTCATTCAATGACTGTGCGGTCTCATTAGTGATGTAGAAATTAGATTTCAGTTTCTTGAGTTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb251</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1447717</contig_pos>
        <strand>+</strand>
        <context>CCTCTTACGA[A/G]AAATAGAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGAACTTCCGAGTAAATCAAAGAATTTGAGGAATGCCTCCTCTTACGA</left_flank>
        <right_flank>AAATAGAAGAGGTGGAAGACTGACGTCCTCTGTAAAAGTGCCCTCAATCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCCGACCTCAATTTTGCACACACACACACATCGTTTTGCGCCGTCGGAGAAAAGATGCCGCATAGCCTTTTCGCCCCACCTCCTCTCTCTTGTTTTCTGTATATCGATAAACGATTTGGATTTATACATTGTATAGAAACTTCATATTACCATTTTTCCACGTCATAGAAATATTTAGAATAGGGAAACAAACATCTTAGTCTTCATATCATCACCATCTTCTTTTTTGAGAAGAGGAAGGGTCAGGTGACAGAATGGGATGGACCGCATTTTTCCCCATTAACTTTTTTGCCTTCGTTTTCGCATAGATGGATGAAAGTTGACACTTCTTCTTTTTCTTCTTCTCCTTCTTCATAAGACGACGACTACCACGACGACGACAAGCGAGGTTAAATGATACCATCGCCGTCGACGCCAGCAGTCCCAGTCGATTGAAGTAGCAGCCGAAAATGAACTTCCGAGTAAATCAAAGAATTTGAGGAATGCCTCCTCTTACGAAAAATAGAAGAGGTGGAAGACTGACGTCCTCTGTAAAAGTGCCCTCAATCTTTCTATGTCTCTTCTGACCCGCACTATCTCATTTTCTCTCACTTTTTCTTCTGATTACAATCGCTGACCTTCTTGTTATGGTCGTCGTCCTCCTGACTCGTCTTTTTAGAAAACCAAGAGGCCTCTGAAAGTTTTTTAGAGAATTGTCATTTGTGAAAATTTTCTATCTATATAGACCTCCGTTTCATGAAAATTATCATCCAACGATTTTCAAAAAACTGGAAAACCTAATCTATCTGAAAAGTATAGTTGTTTATATGTTTTTTAATGTTAAATATCAATTGTTTCCTTCAAAGTCTCTGTTAGCTGTCGAATTCTTGATTGTATCTTAATCAATAATTTTCTCGGATTAGAGAATAAAAATTCGGTCGAATGAACTTCTCGACAATCTGTATGATGACGTCTAGACTGTTCACTTTCTCCTCTTTCCCCTTCTGATGGCTACTTTTC</canonical>
            <polymorphic>CCCCGACCTCAATTTTGCACACACACACACATCGTTTTGCGCCGTCGGAGAAAAGATGCCGCATAGCCTTTTCGCCCCACCTCCTCTCTCTTGTTTTCTGTATATCGATAAACGATTTGGATTTATACATTGTATAGAAACTTCATATTACCATTTTTCCACGTCATAGAAATATTTAGAATAGGGAAACAAACATCTTAGTCTTCATATCATCACCATCTTCTTTTTTGAGAAGAGGAAGGGTCAGGTGACAGAATGGGATGGACCGCATTTTTCCCCATTAACTTTTTTGCCTTCGTTTTCGCATAGATGGATGAAAGTTGACACTTCTTCTTTTTCTTCTTCTCCTTCTTCATAAGACGACGACTACCACGACGACGACAAGCGAGGTTAAATGATACCATCGCCGTCGACGCCAGCAGTCCCAGTCGATTGAAGTAGCAGCCGAAAATGAACTTCCGAGTAAATCAAAGAATTTGAGGAATGCCTCCTCTTACGARAAATAGAAGAGGTGGAAGACTGACGTCCTCTGTAAAAGTGCCCTCAATCTTTCTATGTCTCTTCTGACCCGCACTATCTCATTTTCTCTCACTTTTTCTTCTGATTACAATCGCTGACCTTCTTGTTATGGTCGTCGTCCTCCTGACTCGTCTTTTTAGAAAACCAAGAGGCCTCTGAAAGTTTTTTAGAGAATTGTCATTTGTGAAAATTTTCTATCTATATAGACCTCCGTTTCATGAAAATTATCATCCAACGATTTTCAAAAAACTGGAAAACCTAATCTATCTGAAAAGTATAGTTGTTTATATGTTTTTTAATGTTAAATATCAATTGTTTCCTTCAAAGTCTCTGTTAGCTGTCGAATTCTTGATTGTATCTTAATCAATAATTTTCTCGGATTAGAGAATAAAAATTCGGTCGAATGAACTTCTCGACAATCTGTATGATGACGTCTAGACTGTTCACTTTCTCCTCTTTCCCCTTCTGATGGCTACTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATAGATGGATGAAAGTTGACA</pcr_primer_p1>
		<pcr_primer_p2>AAAGATTGAGGGCACTTTTAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CATAGATGGATGAAAGTTGACACTTCTTCTTTTTCTTCTTCTCCTTCTTCATAAGACGACGACTACCACGACGACGACAAGCGAGGTTAAATGATACCATCGCCGTCGACGCCAGCAGTCCCAGTCGATTGAAGTAGCAGCCGAAAATGAACTTCCGAGTAAATCAAAGAATTTGAGGAATGCCTCCTCTTACGAAAAATAGAAGAGGTGGAAGACTGACGTCCTCTGTAAAAGTGCCCTCAATCTTT</canonical_amplicon>
		<polymorphic_amplicon>CATAGATGGATGAAAGTTGACACTTCTTCTTTTTCTTCTTCTCCTTCTTCATAAGACGACGACTACCACGACGACGACAAGCGAGGTTAAATGATACCATCGCCGTCGACGCCAGCAGTCCCAGTCGATTGAAGTAGCAGCCGAAAATGAACTTCCGAGTAAATCAAAGAATTTGAGGAATGCCTCCTCTTACGARAAATAGAAGAGGTGGAAGACTGACGTCCTCTGTAAAAGTGCCCTCAATCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb285</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1450155</contig_pos>
        <strand>+</strand>
        <context>ctcaaaTATC[C/T]GGTTTCGTAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACACATTTTGATATCTTCAACACGGATTGAGATAGTTAAGCTCAAATATC</left_flank>
        <right_flank>GGTTTCGTAGATTTTCAGAATACCGTAAACATTGTGCCACCCAAACCGCC</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGGTCCTAATGTTTTTTGTACTATTAATGACGTTTTGAGACCAAAAAGGATGCGCGAGCCTTTTTTTAATCTTCGCAAGCAAAAAGATTTACAAAAACTATGTTTCTTTGCTTTCTTTTCGCCGTTCTCTTTTTTATATTTTGCAAGGTTTTTTCTGTTCTTGCAGAATGGGAAATTCCCACTGATAGTGAGGACAAAGTTCGTATAATCTTGTCTGAACAAAGTGAATTTTGAAAATTCTTCTAGAAATATTTTTTTAATTTATGTAAAACATAAGATGTTCCCCGATGAACTTCTTGGAAGTGATCAGAAGCTTACCAGACAACCTGTGAAAAAAGAAACTGTAACTTTTAACTTCGATCCAATTTTTCTCGGTTACTGTCGAAGATATAACAAAGTGATCAACTGATGAATTTTTATCATAATATCAGAAGTGTTTTGCCAGTTGACACATTTTGATATCTTCAACACGGATTGAGATAGTTAAGCTCAAATATCCGGTTTCGTAGATTTTCAGAATACCGTAAACATTGTGCCACCCAAACCGCCAACTTTCAACCCATATATCTCGTTTTCTGTATAAGATATTAGAGTTTTGTTCACTGATAAAATGTTTATCATATTATCAAAAATATATTGACAGTTGTCCACTGTTTGATATCTTTAATAGGAACCGAGATAAAGTGGCTCAAAATTGACGACTTGGGTGGCACCTTTTAATCATTCCCAATCTTCCAGCACTCAAAACTTTTCCTGAATTTTGTCGAATATCTATTCCTGAAACTGAACGAAAAACTATTAAAAAATACCCTCAAACCGCTTTTACCCACTTTTTTTGCTCCAATGACTCATGTCAACCCATGCAGTCAGGCTTAAACTCTCTTATCATTTTCCTCCATCTTTCCACAGTCTTAACCCTACTTTTCTCTTCTCCTACTCCATCTGCTGGCGCCTCAATTTCTGTTCTTTTTCATTCTTATTTGCTCTAATAGACACACT</canonical>
            <polymorphic>GGGGTCCTAATGTTTTTTGTACTATTAATGACGTTTTGAGACCAAAAAGGATGCGCGAGCCTTTTTTTAATCTTCGCAAGCAAAAAGATTTACAAAAACTATGTTTCTTTGCTTTCTTTTCGCCGTTCTCTTTTTTATATTTTGCAAGGTTTTTTCTGTTCTTGCAGAATGGGAAATTCCCACTGATAGTGAGGACAAAGTTCGTATAATCTTGTCTGAACAAAGTGAATTTTGAAAATTCTTCTAGAAATATTTTTTTAATTTATGTAAAACATAAGATGTTCCCCGATGAACTTCTTGGAAGTGATCAGAAGCTTACCAGACAACCTGTGAAAAAAGAAACTGTAACTTTTAACTTCGATCCAATTTTTCTCGGTTACTGTCGAAGATATAACAAAGTGATCAACTGATGAATTTTTATCATAATATCAGAAGTGTTTTGCCAGTTGACACATTTTGATATCTTCAACACGGATTGAGATAGTTAAGCTCAAATATCYGGTTTCGTAGATTTTCAGAATACCGTAAACATTGTGCCACCCAAACCGCCAACTTTCAACCCATATATCTCGTTTTCTGTATAAGATATTAGAGTTTTGTTCACTGATAAAATGTTTATCATATTATCAAAAATATATTGACAGTTGTCCACTGTTTGATATCTTTAATAGGAACCGAGATAAAGTGGCTCAAAATTGACGACTTGGGTGGCACCTTTTAATCATTCCCAATCTTCCAGCACTCAAAACTTTTCCTGAATTTTGTCGAATATCTATTCCTGAAACTGAACGAAAAACTATTAAAAAATACCCTCAAACCGCTTTTACCCACTTTTTTTGCTCCAATGACTCATGTCAACCCATGCAGTCAGGCTTAAACTCTCTTATCATTTTCCTCCATCTTTCCACAGTCTTAACCCTACTTTTCTCTTCTCCTACTCCATCTGCTGGCGCCTCAATTTCTGTTCTTTTTCATTCTTATTTGCTCTAATAGACACACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTCTTGGAAGTGATCAGAAG</pcr_primer_p1>
		<pcr_primer_p2>AGTTTTGAGTGCTGGAAGATT</pcr_primer_p2>
		<pcr_amplicon_size>458</pcr_amplicon_size>
		<canonical_amplicon>ACTTCTTGGAAGTGATCAGAAGCTTACCAGACAACCTGTGAAAAAAGAAACTGTAACTTTTAACTTCGATCCAATTTTTCTCGGTTACTGTCGAAGATATAACAAAGTGATCAACTGATGAATTTTTATCATAATATCAGAAGTGTTTTGCCAGTTGACACATTTTGATATCTTCAACACGGATTGAGATAGTTAAGCTCAAATATCCGGTTTCGTAGATTTTCAGAATACCGTAAACATTGTGCCACCCAAACCGCCAACTTTCAACCCATATATCTCGTTTTCTGTATAAGATATTAGAGTTTTGTTCACTGATAAAATGTTTATCATATTATCAAAAATATATTGACAGTTGTCCACTGTTTGATATCTTTAATAGGAACCGAGATAAAGTGGCTCAAAATTGACGACTTGGGTGGCACCTTTTAATCATTCCCAATCTTCCAGCACTCAAAACT</canonical_amplicon>
		<polymorphic_amplicon>ACTTCTTGGAAGTGATCAGAAGCTTACCAGACAACCTGTGAAAAAAGAAACTGTAACTTTTAACTTCGATCCAATTTTTCTCGGTTACTGTCGAAGATATAACAAAGTGATCAACTGATGAATTTTTATCATAATATCAGAAGTGTTTTGCCAGTTGACACATTTTGATATCTTCAACACGGATTGAGATAGTTAAGCTCAAATATCYGGTTTCGTAGATTTTCAGAATACCGTAAACATTGTGCCACCCAAACCGCCAACTTTCAACCCATATATCTCGTTTTCTGTATAAGATATTAGAGTTTTGTTCACTGATAAAATGTTTATCATATTATCAAAAATATATTGACAGTTGTCCACTGTTTGATATCTTTAATAGGAACCGAGATAAAGTGGCTCAAAATTGACGACTTGGGTGGCACCTTTTAATCATTCCCAATCTTCCAGCACTCAAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb286</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1450545</contig_pos>
        <strand>+</strand>
        <context>TCTCTTATCA[A/T]TTTCCTCCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCCAATGACTCATGTCAACCCATGCAGTCAGGCTTAAACTCTCTTATCA</left_flank>
        <right_flank>TTTCCTCCATCTTTCCACAGTCTTAACCCTACTTTTCTCTTCTCCTACTC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAACAAAGTGATCAACTGATGAATTTTTATCATAATATCAGAAGTGTTTTGCCAGTTGACACATTTTGATATCTTCAACACGGATTGAGATAGTTAAGCTCAAATATCCGGTTTCGTAGATTTTCAGAATACCGTAAACATTGTGCCACCCAAACCGCCAACTTTCAACCCATATATCTCGTTTTCTGTATAAGATATTAGAGTTTTGTTCACTGATAAAATGTTTATCATATTATCAAAAATATATTGACAGTTGTCCACTGTTTGATATCTTTAATAGGAACCGAGATAAAGTGGCTCAAAATTGACGACTTGGGTGGCACCTTTTAATCATTCCCAATCTTCCAGCACTCAAAACTTTTCCTGAATTTTGTCGAATATCTATTCCTGAAACTGAACGAAAAACTATTAAAAAATACCCTCAAACCGCTTTTACCCACTTTTTTTGCTCCAATGACTCATGTCAACCCATGCAGTCAGGCTTAAACTCTCTTATCATTTTCCTCCATCTTTCCACAGTCTTAACCCTACTTTTCTCTTCTCCTACTCCATCTGCTGGCGCCTCAATTTCTGTTCTTTTTCATTCTTATTTGCTCTAATAGACACACTTTGAAATTTCTCTGTCAATCAACATAGAATACCAATCATTCCAGAGCAGTTTTTTGGGATCTTTCTGGTTCTATCCTATTATATTTTAGCAATAAATTTCGCTCATTCCCTTTTTCATTTTTCAATTCGTTATCATATGAAGAAGGCCTTCTAGAAGGGAATCCCGGGTTGTCAGTCACCTTTGTGTGATGGTATGTATCAGTCCGCGCGTCGATTGCCTTTAACGTTTTCTATAGAAACCGGGAGTCTCCATAGAGACATTGTCTCTAACATAATTTGAATATCTTTCCCCTCTTCTTCTTCTTGATATTCTTTATCACCTCCTCTCACCCTTCCACTTTTCTACAAGAAATTCCACTTGGGGCTAGCCAGGCGGCGGTAGATCAGATC</canonical>
            <polymorphic>ATAACAAAGTGATCAACTGATGAATTTTTATCATAATATCAGAAGTGTTTTGCCAGTTGACACATTTTGATATCTTCAACACGGATTGAGATAGTTAAGCTCAAATATCCGGTTTCGTAGATTTTCAGAATACCGTAAACATTGTGCCACCCAAACCGCCAACTTTCAACCCATATATCTCGTTTTCTGTATAAGATATTAGAGTTTTGTTCACTGATAAAATGTTTATCATATTATCAAAAATATATTGACAGTTGTCCACTGTTTGATATCTTTAATAGGAACCGAGATAAAGTGGCTCAAAATTGACGACTTGGGTGGCACCTTTTAATCATTCCCAATCTTCCAGCACTCAAAACTTTTCCTGAATTTTGTCGAATATCTATTCCTGAAACTGAACGAAAAACTATTAAAAAATACCCTCAAACCGCTTTTACCCACTTTTTTTGCTCCAATGACTCATGTCAACCCATGCAGTCAGGCTTAAACTCTCTTATCAWTTTCCTCCATCTTTCCACAGTCTTAACCCTACTTTTCTCTTCTCCTACTCCATCTGCTGGCGCCTCAATTTCTGTTCTTTTTCATTCTTATTTGCTCTAATAGACACACTTTGAAATTTCTCTGTCAATCAACATAGAATACCAATCATTCCAGAGCAGTTTTTTGGGATCTTTCTGGTTCTATCCTATTATATTTTAGCAATAAATTTCGCTCATTCCCTTTTTCATTTTTCAATTCGTTATCATATGAAGAAGGCCTTCTAGAAGGGAATCCCGGGTTGTCAGTCACCTTTGTGTGATGGTATGTATCAGTCCGCGCGTCGATTGCCTTTAACGTTTTCTATAGAAACCGGGAGTCTCCATAGAGACATTGTCTCTAACATAATTTGAATATCTTTCCCCTCTTCTTCTTCTTGATATTCTTTATCACCTCCTCTCACCCTTCCACTTTTCTACAAGAAATTCCACTTGGGGCTAGCCAGGCGGCGGTAGATCAGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATATCTATTCCTGAAACTGA</pcr_primer_p1>
		<pcr_primer_p2>GACAGAGAAATTTCAAAGTGTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CGAATATCTATTCCTGAAACTGAACGAAAAACTATTAAAAAATACCCTCAAACCGCTTTTACCCACTTTTTTTGCTCCAATGACTCATGTCAACCCATGCAGTCAGGCTTAAACTCTCTTATCATTTTCCTCCATCTTTCCACAGTCTTAACCCTACTTTTCTCTTCTCCTACTCCATCTGCTGGCGCCTCAATTTCTGTTCTTTTTCATTCTTATTTGCTCTAATAGACACACTTTGAAATTTCTCTGTC</canonical_amplicon>
		<polymorphic_amplicon>CGAATATCTATTCCTGAAACTGAACGAAAAACTATTAAAAAATACCCTCAAACCGCTTTTACCCACTTTTTTTGCTCCAATGACTCATGTCAACCCATGCAGTCAGGCTTAAACTCTCTTATCAWTTTCCTCCATCTTTCCACAGTCTTAACCCTACTTTTCTCTTCTCCTACTCCATCTGCTGGCGCCTCAATTTCTGTTCTTTTTCATTCTTATTTGCTCTAATAGACACACTTTGAAATTTCTCTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb287</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1452541</contig_pos>
        <strand>+</strand>
        <context>TTTTACGTTC[A/C]CCCYTCCATC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAGCTGGTTCTCCTATTTTACGGCTCTTTTTACGGCTCTTTTTACGTTC</left_flank>
        <right_flank>CCCCTCCATCTGAATATCTCCTTCTTCTCTACCCTTATCTTTTTCTCAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACGAATTCGTTTTCAAAGTTTCCAAAAAAAAACATAATACGCTTGATGTCACCTTCAAGAAGAATACTATTTTTCCGACAATACCGTAACCAACTACCGTAGAACCTGTATTAGAAGGGCCTCGTTGATTGGAGAGCCCCTGTAATAGAAGGGCACTGCGAGAGCGGTTTGGAAAAATATAAGATCCCCTTTAAAATATGTTGTCTGAAACTAAGCATTTCCCTGCGTTTTCAGCGAAAAATAGTCAAAATAACTTCAAAATTTCACAGAAAATTTGTTGAAACACTCTCTTTTGCTTAAAACCTGGCTCAATTTTGATGAAATCGTCAGATTTTAATGGATTAAAATTTGAAAAATTTGGAAAAAATGGCTGGAAAACAGAAGAGCCCTCTCTAATTGAAGGCCCCTGTAAAAGCAAGGCCTTCCGCAGAAACCTTGGTATAATAGAAGAGCTGGTTCTCCTATTTTACGGCTCTTTTTACGGCTCTTTTTACGTTCCCCCCTCCATCTGAATATCTCCTTCTTCTCTACCCTTATCTTTTTCTCAATTTCACTTTTCACTTCTACGATCACAACCTCCTCAGAAAAAAAATCGAACCTATTACTGATGATTACGTGAAAAGATGGGTTTCCTTGACTCTCGTATACTCTCGTATACCTCCTTTCTTTTTGCGCACTTCTTCCCAATATCCCCCATCATCTTTTGCCTTTTCTCTGCTGTCCCCATGGTATGTACAGTCTGTCGCAAGGCACTGTCCAAGAGATTCCAAGACGCAGGTGTCCGAAGGAATTCCTGGCCGGGCCGAGAGAGTATTGAGAATGGTGGAGACCCAGAGACATCTAAAGTCTTCCCTCTCTCTTTGTCTTATTCTCTTCTTCTTACCTTATATTTTTGACTCGTGTATGGTATGCAAGGCAGCATTGTTTTGTTTCTGTTCTTAACCTTCCATTTTCCTTATTTTTAAAGATATTTTTGTCTACATACCATACACATACTAC</canonical>
            <polymorphic>TACGAATTCGTTTTCAAAGTTTCCAAAAAAAAACATAATACGCTTGATGTCACCTTCAAGAAGAATACTATTTTTCCGACAATACCGTAACCAACTACCGTAGAACCTGTATTAGAAGGGCCTCGTTGATTGGAGAGCCCCTGTAATAGAAGGGCACTGCGAGAGCGGTTTGGAAAAATATAAGATCCCCTTTAAAATATGTTGTCTGAAACTAAGCATTTCCCTGCGTTTTCAGCGAAAAATAGTCAAAATAACTTCAAAATTTCACAGAAAATTTGTTGAAACACTCTCTTTTGCTTAAAACCTGGCTCAATTTTGATGAAATCGTCAGATTTTAATGGATTAAAATTTGAAAAATTTGGAAAAAATGGCTGGAAAACAGAAGAGCCCTCTCTAATTGAAGGCCCCTGTAAAAGCAAGGCCTTCCGCAGAAACCTTGGTATAATAGAAGAGCTGGTTCTCCTATTTTACGGCTCTTTTTACGGCTCTTTTTACGTTCMCCCCTCCATCTGAATATCTCCTTCTTCTCTACCCTTATCTTTTTCTCAATTTCACTTTTCACTTCTACGATCACAACCTCCTCAGAAAAAAAATCGAACCTATTACTGATGATTACGTGAAAAGATGGGTTTCCTTGACTCTCGTATACTCTCGTATACCTCCTTTCTTTTTGCGCACTTCTTCCCAATATCCCCCATCATCTTTTGCCTTTTCTCTGCTGTCCCCATGGTATGTACAGTCTGTCGCAAGGCACTGTCCAAGAGATTCCAAGACGCAGGTGTCCGAAGGAATTCCTGGCCGGGCCGAGAGAGTATTGAGAATGGTGGAGACCCAGAGACATCTAAAGTCTTCCCTCTCTCTTTGTCTTATTCTCTTCTTCTTACCTTATATTTTTGACTCGTGTATGGTATGCAAGGCAGCATTGTTTTGTTTCTGTTCTTAACCTTCCATTTTCCTTATTTTTAAAGATATTTTTGTCTACATACCATACACATACTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGAAATCGTCAGATTTTAATG</pcr_primer_p1>
		<pcr_primer_p2>GAAGTGAAAAGTGAAATTGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATGAAATCGTCAGATTTTAATGGATTAAAATTTGAAAAATTTGGAAAAAATGGCTGGAAAACAGAAGAGCCCTCTCTAATTGAAGGCCCCTGTAAAAGCAAGGCCTTCCGCAGAAACCTTGGTATAATAGAAGAGCTGGTTCTCCTATTTTACGGCTCTTTTTACGGCTCTTTTTACGTTCCCCCCTCCATCTGAATATCTCCTTCTTCTCTACCCTTATCTTTTTCTCAATTTCACTTTTCACTTC</canonical_amplicon>
		<polymorphic_amplicon>GATGAAATCGTCAGATTTTAATGGATTAAAATTTGAAAAATTTGGAAAAAATGGCTGGAAAACAGAAGAGCCCTCTCTAATTGAAGGCCCCTGTAAAAGCAAGGCCTTCCGCAGAAACCTTGGTATAATAGAAGAGCTGGTTCTCCTATTTTACGGCTCTTTTTACGGCTCTTTTTACGTTCMCCCCTCCATCTGAATATCTCCTTCTTCTCTACCCTTATCTTTTTCTCAATTTCACTTTTCACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb288</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1452545</contig_pos>
        <strand>+</strand>
        <context>ACGTTCMCCC[C/T]TCCATCTGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGGTTCTCCTATTTTACGGCTCTTTTTACGGCTCTTTTTACGTTCCCCC</left_flank>
        <right_flank>TCCATCTGAATATCTCCTTCTTCTCTACCCTTATCTTTTTCTCAATTTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCGTTTTCAAAGTTTCCAAAAAAAAACATAATACGCTTGATGTCACCTTCAAGAAGAATACTATTTTTCCGACAATACCGTAACCAACTACCGTAGAACCTGTATTAGAAGGGCCTCGTTGATTGGAGAGCCCCTGTAATAGAAGGGCACTGCGAGAGCGGTTTGGAAAAATATAAGATCCCCTTTAAAATATGTTGTCTGAAACTAAGCATTTCCCTGCGTTTTCAGCGAAAAATAGTCAAAATAACTTCAAAATTTCACAGAAAATTTGTTGAAACACTCTCTTTTGCTTAAAACCTGGCTCAATTTTGATGAAATCGTCAGATTTTAATGGATTAAAATTTGAAAAATTTGGAAAAAATGGCTGGAAAACAGAAGAGCCCTCTCTAATTGAAGGCCCCTGTAAAAGCAAGGCCTTCCGCAGAAACCTTGGTATAATAGAAGAGCTGGTTCTCCTATTTTACGGCTCTTTTTACGGCTCTTTTTACGTTCCCCCCTCCATCTGAATATCTCCTTCTTCTCTACCCTTATCTTTTTCTCAATTTCACTTTTCACTTCTACGATCACAACCTCCTCAGAAAAAAAATCGAACCTATTACTGATGATTACGTGAAAAGATGGGTTTCCTTGACTCTCGTATACTCTCGTATACCTCCTTTCTTTTTGCGCACTTCTTCCCAATATCCCCCATCATCTTTTGCCTTTTCTCTGCTGTCCCCATGGTATGTACAGTCTGTCGCAAGGCACTGTCCAAGAGATTCCAAGACGCAGGTGTCCGAAGGAATTCCTGGCCGGGCCGAGAGAGTATTGAGAATGGTGGAGACCCAGAGACATCTAAAGTCTTCCCTCTCTCTTTGTCTTATTCTCTTCTTCTTACCTTATATTTTTGACTCGTGTATGGTATGCAAGGCAGCATTGTTTTGTTTCTGTTCTTAACCTTCCATTTTCCTTATTTTTAAAGATATTTTTGTCTACATACCATACACATACTACATTC</canonical>
            <polymorphic>AATTCGTTTTCAAAGTTTCCAAAAAAAAACATAATACGCTTGATGTCACCTTCAAGAAGAATACTATTTTTCCGACAATACCGTAACCAACTACCGTAGAACCTGTATTAGAAGGGCCTCGTTGATTGGAGAGCCCCTGTAATAGAAGGGCACTGCGAGAGCGGTTTGGAAAAATATAAGATCCCCTTTAAAATATGTTGTCTGAAACTAAGCATTTCCCTGCGTTTTCAGCGAAAAATAGTCAAAATAACTTCAAAATTTCACAGAAAATTTGTTGAAACACTCTCTTTTGCTTAAAACCTGGCTCAATTTTGATGAAATCGTCAGATTTTAATGGATTAAAATTTGAAAAATTTGGAAAAAATGGCTGGAAAACAGAAGAGCCCTCTCTAATTGAAGGCCCCTGTAAAAGCAAGGCCTTCCGCAGAAACCTTGGTATAATAGAAGAGCTGGTTCTCCTATTTTACGGCTCTTTTTACGGCTCTTTTTACGTTCCCCCYTCCATCTGAATATCTCCTTCTTCTCTACCCTTATCTTTTTCTCAATTTCACTTTTCACTTCTACGATCACAACCTCCTCAGAAAAAAAATCGAACCTATTACTGATGATTACGTGAAAAGATGGGTTTCCTTGACTCTCGTATACTCTCGTATACCTCCTTTCTTTTTGCGCACTTCTTCCCAATATCCCCCATCATCTTTTGCCTTTTCTCTGCTGTCCCCATGGTATGTACAGTCTGTCGCAAGGCACTGTCCAAGAGATTCCAAGACGCAGGTGTCCGAAGGAATTCCTGGCCGGGCCGAGAGAGTATTGAGAATGGTGGAGACCCAGAGACATCTAAAGTCTTCCCTCTCTCTTTGTCTTATTCTCTTCTTCTTACCTTATATTTTTGACTCGTGTATGGTATGCAAGGCAGCATTGTTTTGTTTCTGTTCTTAACCTTCCATTTTCCTTATTTTTAAAGATATTTTTGTCTACATACCATACACATACTACATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGAAATCGTCAGATTTTAATG</pcr_primer_p1>
		<pcr_primer_p2>GAAGTGAAAAGTGAAATTGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATGAAATCGTCAGATTTTAATGGATTAAAATTTGAAAAATTTGGAAAAAATGGCTGGAAAACAGAAGAGCCCTCTCTAATTGAAGGCCCCTGTAAAAGCAAGGCCTTCCGCAGAAACCTTGGTATAATAGAAGAGCTGGTTCTCCTATTTTACGGCTCTTTTTACGGCTCTTTTTACGTTCCCCCCTCCATCTGAATATCTCCTTCTTCTCTACCCTTATCTTTTTCTCAATTTCACTTTTCACTTC</canonical_amplicon>
		<polymorphic_amplicon>GATGAAATCGTCAGATTTTAATGGATTAAAATTTGAAAAATTTGGAAAAAATGGCTGGAAAACAGAAGAGCCCTCTCTAATTGAAGGCCCCTGTAAAAGCAAGGCCTTCCGCAGAAACCTTGGTATAATAGAAGAGCTGGTTCTCCTATTTTACGGCTCTTTTTACGGCTCTTTTTACGTTCCCCCYTCCATCTGAATATCTCCTTCTTCTCTACCCTTATCTTTTTCTCAATTTCACTTTTCACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb289</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1453845</contig_pos>
        <strand>+</strand>
        <context>CAAAAAATCA[A/G]GTTAGATAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTATGCCTTGTTATCAATTTTTTACTATTTCCGCTCATTTCAAAAAATCA</left_flank>
        <right_flank>GTTAGATAAAAATTTACTGTCTGTTAGGGCCTGTCAAAAAAGATCACTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGCCAAATTAGTCACTGTAGAAGGCATTCCGATGGTGTCTGACAGGAAAAATTATGGTGTATCACAAGATATTGGTATTTATCGTATAACCAACCAACTTAACCACCTGATTAGTGGAGAAGGTCATCATGTACCTGATATCACAGATTCCAGATGACACCATTTCCCTTTTAAGTTCTTTTAATTTCTCTCTTTTCCCTTTTCTTCTTATCTTATTCTAAACATTCCTTCATTTTTTCTCCTCTTCTCTTCCTTTTTCCCCAATCGTTTACCCCCTTGTCAACAGAAGAAAAAACATTGATTGATCATCACATCATTTTCTTTTTCTCACATTCTCTCCCCCTTATTTGATTACACCCCATTTTTAGTGTCCTCCTATTGTTTGGAAATATGAGAACTCTCTCATTAGTGATGATGTGGGTGTATTTGTCACATCATAAATGTCTACTATGCCTTGTTATCAATTTTTTACTATTTCCGCTCATTTCAAAAAATCAGGTTAGATAAAAATTTACTGTCTGTTAGGGCCTGTCAAAAAAGATCACTGATTATGAGATAAGCGAGGAAAAAAGTCTGTGATCTCTGATAAAACTGATCCACATTGTGTTAGGATTTTCAGAAATTTAAAAAATAATCAGTAGTCTGAACTATGCAATCTTGAACAACTGATAATGATGGCGGGTGACATTTGAATTCCTTAACTATGAACAATGAACCGTTATAGAAATTTGATTCCTCGAAAGACCATTCTTACTCAATTTTGAAATTTTGAAACTCAGCTTTAGGAATCGTTGACTTAAGTTTTCGAACTTTGTTTATCCAGAATTTGACCTCGGCACTTTTGATTGGTTTGGTCTTAAGATTTTGAGACTCTTTTGAGAAAGCTCTGCACTCTATTAGAACGCCCCTCCCCCCGGCTCTAAACCGTCAACTTTAAGCCCATACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCA</canonical>
            <polymorphic>AACGCCAAATTAGTCACTGTAGAAGGCATTCCGATGGTGTCTGACAGGAAAAATTATGGTGTATCACAAGATATTGGTATTTATCGTATAACCAACCAACTTAACCACCTGATTAGTGGAGAAGGTCATCATGTACCTGATATCACAGATTCCAGATGACACCATTTCCCTTTTAAGTTCTTTTAATTTCTCTCTTTTCCCTTTTCTTCTTATCTTATTCTAAACATTCCTTCATTTTTTCTCCTCTTCTCTTCCTTTTTCCCCAATCGTTTACCCCCTTGTCAACAGAAGAAAAAACATTGATTGATCATCACATCATTTTCTTTTTCTCACATTCTCTCCCCCTTATTTGATTACACCCCATTTTTAGTGTCCTCCTATTGTTTGGAAATATGAGAACTCTCTCATTAGTGATGATGTGGGTGTATTTGTCACATCATAAATGTCTACTATGCCTTGTTATCAATTTTTTACTATTTCCGCTCATTTCAAAAAATCARGTTAGATAAAAATTTACTGTCTGTTAGGGCCTGTCAAAAAAGATCACTGATTATGAGATAAGCGAGGAAAAAAGTCTGTGATCTCTGATAAAACTGATCCACATTGTGTTAGGATTTTCAGAAATTTAAAAAATAATCAGTAGTCTGAACTATGCAATCTTGAACAACTGATAATGATGGCGGGTGACATTTGAATTCCTTAACTATGAACAATGAACCGTTATAGAAATTTGATTCCTCGAAAGACCATTCTTACTCAATTTTGAAATTTTGAAACTCAGCTTTAGGAATCGTTGACTTAAGTTTTCGAACTTTGTTTATCCAGAATTTGACCTCGGCACTTTTGATTGGTTTGGTCTTAAGATTTTGAGACTCTTTTGAGAAAGCTCTGCACTCTATTAGAACGCCCCTCCCCCCGGCTCTAAACCGTCAACTTTAAGCCCATACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTAGTGTCCTCCTATTGTTTG</pcr_primer_p1>
		<pcr_primer_p2>AACACAATGTGGATCAGTTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTTAGTGTCCTCCTATTGTTTGGAAATATGAGAACTCTCTCATTAGTGATGATGTGGGTGTATTTGTCACATCATAAATGTCTACTATGCCTTGTTATCAATTTTTTACTATTTCCGCTCATTTCAAAAAATCAGGTTAGATAAAAATTTACTGTCTGTTAGGGCCTGTCAAAAAAGATCACTGATTATGAGATAAGCGAGGAAAAAAGTCTGTGATCTCTGATAAAACTGATCCACATTGTGTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTAGTGTCCTCCTATTGTTTGGAAATATGAGAACTCTCTCATTAGTGATGATGTGGGTGTATTTGTCACATCATAAATGTCTACTATGCCTTGTTATCAATTTTTTACTATTTCCGCTCATTTCAAAAAATCARGTTAGATAAAAATTTACTGTCTGTTAGGGCCTGTCAAAAAAGATCACTGATTATGAGATAAGCGAGGAAAAAAGTCTGTGATCTCTGATAAAACTGATCCACATTGTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb290</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1453804</contig_pos>
        <strand>+</strand>
        <context>ACTATGYCTT[G/T]TTATCAATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAGTGATGATGTGGGTGTATTTGTCACATCATAAATGTCTACTATGCCTT</left_flank>
        <right_flank>TTATCAATTTTTTACTATTTCCGCTCATTTCAAAAAATCAGGTTAGATAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACCTTCTTTTTTTGAAACAAACAAAAGCAGATGACCGGAAACGCCAAATTAGTCACTGTAGAAGGCATTCCGATGGTGTCTGACAGGAAAAATTATGGTGTATCACAAGATATTGGTATTTATCGTATAACCAACCAACTTAACCACCTGATTAGTGGAGAAGGTCATCATGTACCTGATATCACAGATTCCAGATGACACCATTTCCCTTTTAAGTTCTTTTAATTTCTCTCTTTTCCCTTTTCTTCTTATCTTATTCTAAACATTCCTTCATTTTTTCTCCTCTTCTCTTCCTTTTTCCCCAATCGTTTACCCCCTTGTCAACAGAAGAAAAAACATTGATTGATCATCACATCATTTTCTTTTTCTCACATTCTCTCCCCCTTATTTGATTACACCCCATTTTTAGTGTCCTCCTATTGTTTGGAAATATGAGAACTCTCTCATTAGTGATGATGTGGGTGTATTTGTCACATCATAAATGTCTACTATGCCTTGTTATCAATTTTTTACTATTTCCGCTCATTTCAAAAAATCAGGTTAGATAAAAATTTACTGTCTGTTAGGGCCTGTCAAAAAAGATCACTGATTATGAGATAAGCGAGGAAAAAAGTCTGTGATCTCTGATAAAACTGATCCACATTGTGTTAGGATTTTCAGAAATTTAAAAAATAATCAGTAGTCTGAACTATGCAATCTTGAACAACTGATAATGATGGCGGGTGACATTTGAATTCCTTAACTATGAACAATGAACCGTTATAGAAATTTGATTCCTCGAAAGACCATTCTTACTCAATTTTGAAATTTTGAAACTCAGCTTTAGGAATCGTTGACTTAAGTTTTCGAACTTTGTTTATCCAGAATTTGACCTCGGCACTTTTGATTGGTTTGGTCTTAAGATTTTGAGACTCTTTTGAGAAAGCTCTGCACTCTATTAGAACGCCCCTCCCCCCGGCTCTAAACCGTCAACTTTAAGCCCATACAGTGGCGAACGT</canonical>
            <polymorphic>GTACCTTCTTTTTTTGAAACAAACAAAAGCAGATGACCGGAAACGCCAAATTAGTCACTGTAGAAGGCATTCCGATGGTGTCTGACAGGAAAAATTATGGTGTATCACAAGATATTGGTATTTATCGTATAACCAACCAACTTAACCACCTGATTAGTGGAGAAGGTCATCATGTACCTGATATCACAGATTCCAGATGACACCATTTCCCTTTTAAGTTCTTTTAATTTCTCTCTTTTCCCTTTTCTTCTTATCTTATTCTAAACATTCCTTCATTTTTTCTCCTCTTCTCTTCCTTTTTCCCCAATCGTTTACCCCCTTGTCAACAGAAGAAAAAACATTGATTGATCATCACATCATTTTCTTTTTCTCACATTCTCTCCCCCTTATTTGATTACACCCCATTTTTAGTGTCCTCCTATTGTTTGGAAATATGAGAACTCTCTCATTAGTGATGATGTGGGTGTATTTGTCACATCATAAATGTCTACTATGCCTTKTTATCAATTTTTTACTATTTCCGCTCATTTCAAAAAATCAGGTTAGATAAAAATTTACTGTCTGTTAGGGCCTGTCAAAAAAGATCACTGATTATGAGATAAGCGAGGAAAAAAGTCTGTGATCTCTGATAAAACTGATCCACATTGTGTTAGGATTTTCAGAAATTTAAAAAATAATCAGTAGTCTGAACTATGCAATCTTGAACAACTGATAATGATGGCGGGTGACATTTGAATTCCTTAACTATGAACAATGAACCGTTATAGAAATTTGATTCCTCGAAAGACCATTCTTACTCAATTTTGAAATTTTGAAACTCAGCTTTAGGAATCGTTGACTTAAGTTTTCGAACTTTGTTTATCCAGAATTTGACCTCGGCACTTTTGATTGGTTTGGTCTTAAGATTTTGAGACTCTTTTGAGAAAGCTCTGCACTCTATTAGAACGCCCCTCCCCCCGGCTCTAAACCGTCAACTTTAAGCCCATACAGTGGCGAACGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTAGTGTCCTCCTATTGTTTG</pcr_primer_p1>
		<pcr_primer_p2>AACACAATGTGGATCAGTTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTTAGTGTCCTCCTATTGTTTGGAAATATGAGAACTCTCTCATTAGTGATGATGTGGGTGTATTTGTCACATCATAAATGTCTACTATGCCTTGTTATCAATTTTTTACTATTTCCGCTCATTTCAAAAAATCAGGTTAGATAAAAATTTACTGTCTGTTAGGGCCTGTCAAAAAAGATCACTGATTATGAGATAAGCGAGGAAAAAAGTCTGTGATCTCTGATAAAACTGATCCACATTGTGTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTAGTGTCCTCCTATTGTTTGGAAATATGAGAACTCTCTCATTAGTGATGATGTGGGTGTATTTGTCACATCATAAATGTCTACTATGCCTTKTTATCAATTTTTTACTATTTCCGCTCATTTCAAAAAATCAGGTTAGATAAAAATTTACTGTCTGTTAGGGCCTGTCAAAAAAGATCACTGATTATGAGATAAGCGAGGAAAAAAGTCTGTGATCTCTGATAAAACTGATCCACATTGTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb291</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1453800</contig_pos>
        <strand>+</strand>
        <context>GTCTACTATG[C/T]CTTKTTATCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATTAGTGATGATGTGGGTGTATTTGTCACATCATAAATGTCTACTATG</left_flank>
        <right_flank>CTTGTTATCAATTTTTTACTATTTCCGCTCATTTCAAAAAATCAGGTTAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCGTACCTTCTTTTTTTGAAACAAACAAAAGCAGATGACCGGAAACGCCAAATTAGTCACTGTAGAAGGCATTCCGATGGTGTCTGACAGGAAAAATTATGGTGTATCACAAGATATTGGTATTTATCGTATAACCAACCAACTTAACCACCTGATTAGTGGAGAAGGTCATCATGTACCTGATATCACAGATTCCAGATGACACCATTTCCCTTTTAAGTTCTTTTAATTTCTCTCTTTTCCCTTTTCTTCTTATCTTATTCTAAACATTCCTTCATTTTTTCTCCTCTTCTCTTCCTTTTTCCCCAATCGTTTACCCCCTTGTCAACAGAAGAAAAAACATTGATTGATCATCACATCATTTTCTTTTTCTCACATTCTCTCCCCCTTATTTGATTACACCCCATTTTTAGTGTCCTCCTATTGTTTGGAAATATGAGAACTCTCTCATTAGTGATGATGTGGGTGTATTTGTCACATCATAAATGTCTACTATGCCTTGTTATCAATTTTTTACTATTTCCGCTCATTTCAAAAAATCAGGTTAGATAAAAATTTACTGTCTGTTAGGGCCTGTCAAAAAAGATCACTGATTATGAGATAAGCGAGGAAAAAAGTCTGTGATCTCTGATAAAACTGATCCACATTGTGTTAGGATTTTCAGAAATTTAAAAAATAATCAGTAGTCTGAACTATGCAATCTTGAACAACTGATAATGATGGCGGGTGACATTTGAATTCCTTAACTATGAACAATGAACCGTTATAGAAATTTGATTCCTCGAAAGACCATTCTTACTCAATTTTGAAATTTTGAAACTCAGCTTTAGGAATCGTTGACTTAAGTTTTCGAACTTTGTTTATCCAGAATTTGACCTCGGCACTTTTGATTGGTTTGGTCTTAAGATTTTGAGACTCTTTTGAGAAAGCTCTGCACTCTATTAGAACGCCCCTCCCCCCGGCTCTAAACCGTCAACTTTAAGCCCATACAGTGGCGA</canonical>
            <polymorphic>TTCCGTACCTTCTTTTTTTGAAACAAACAAAAGCAGATGACCGGAAACGCCAAATTAGTCACTGTAGAAGGCATTCCGATGGTGTCTGACAGGAAAAATTATGGTGTATCACAAGATATTGGTATTTATCGTATAACCAACCAACTTAACCACCTGATTAGTGGAGAAGGTCATCATGTACCTGATATCACAGATTCCAGATGACACCATTTCCCTTTTAAGTTCTTTTAATTTCTCTCTTTTCCCTTTTCTTCTTATCTTATTCTAAACATTCCTTCATTTTTTCTCCTCTTCTCTTCCTTTTTCCCCAATCGTTTACCCCCTTGTCAACAGAAGAAAAAACATTGATTGATCATCACATCATTTTCTTTTTCTCACATTCTCTCCCCCTTATTTGATTACACCCCATTTTTAGTGTCCTCCTATTGTTTGGAAATATGAGAACTCTCTCATTAGTGATGATGTGGGTGTATTTGTCACATCATAAATGTCTACTATGYCTTGTTATCAATTTTTTACTATTTCCGCTCATTTCAAAAAATCAGGTTAGATAAAAATTTACTGTCTGTTAGGGCCTGTCAAAAAAGATCACTGATTATGAGATAAGCGAGGAAAAAAGTCTGTGATCTCTGATAAAACTGATCCACATTGTGTTAGGATTTTCAGAAATTTAAAAAATAATCAGTAGTCTGAACTATGCAATCTTGAACAACTGATAATGATGGCGGGTGACATTTGAATTCCTTAACTATGAACAATGAACCGTTATAGAAATTTGATTCCTCGAAAGACCATTCTTACTCAATTTTGAAATTTTGAAACTCAGCTTTAGGAATCGTTGACTTAAGTTTTCGAACTTTGTTTATCCAGAATTTGACCTCGGCACTTTTGATTGGTTTGGTCTTAAGATTTTGAGACTCTTTTGAGAAAGCTCTGCACTCTATTAGAACGCCCCTCCCCCCGGCTCTAAACCGTCAACTTTAAGCCCATACAGTGGCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTAGTGTCCTCCTATTGTTTG</pcr_primer_p1>
		<pcr_primer_p2>AACACAATGTGGATCAGTTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTTAGTGTCCTCCTATTGTTTGGAAATATGAGAACTCTCTCATTAGTGATGATGTGGGTGTATTTGTCACATCATAAATGTCTACTATGCCTTGTTATCAATTTTTTACTATTTCCGCTCATTTCAAAAAATCAGGTTAGATAAAAATTTACTGTCTGTTAGGGCCTGTCAAAAAAGATCACTGATTATGAGATAAGCGAGGAAAAAAGTCTGTGATCTCTGATAAAACTGATCCACATTGTGTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTAGTGTCCTCCTATTGTTTGGAAATATGAGAACTCTCTCATTAGTGATGATGTGGGTGTATTTGTCACATCATAAATGTCTACTATGYCTTGTTATCAATTTTTTACTATTTCCGCTCATTTCAAAAAATCAGGTTAGATAAAAATTTACTGTCTGTTAGGGCCTGTCAAAAAAGATCACTGATTATGAGATAAGCGAGGAAAAAAGTCTGTGATCTCTGATAAAACTGATCCACATTGTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb292</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1453751</contig_pos>
        <strand>+</strand>
        <context>AGAACTCTCT[C/G]ATTAGTGATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACACCCCATTTTTAGTGTCCTCCTATTGTTTGGAAATATGAGAACTCTCT</left_flank>
        <right_flank>ATTAGTGATGATGTGGGTGTATTTGTCACATCATAAATGTCTACTATGCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGCAGAACCCATTCTCTGCATTCCACAATTTTTCTGTGTCTATTTTTTTCCGTACCTTCTTTTTTTGAAACAAACAAAAGCAGATGACCGGAAACGCCAAATTAGTCACTGTAGAAGGCATTCCGATGGTGTCTGACAGGAAAAATTATGGTGTATCACAAGATATTGGTATTTATCGTATAACCAACCAACTTAACCACCTGATTAGTGGAGAAGGTCATCATGTACCTGATATCACAGATTCCAGATGACACCATTTCCCTTTTAAGTTCTTTTAATTTCTCTCTTTTCCCTTTTCTTCTTATCTTATTCTAAACATTCCTTCATTTTTTCTCCTCTTCTCTTCCTTTTTCCCCAATCGTTTACCCCCTTGTCAACAGAAGAAAAAACATTGATTGATCATCACATCATTTTCTTTTTCTCACATTCTCTCCCCCTTATTTGATTACACCCCATTTTTAGTGTCCTCCTATTGTTTGGAAATATGAGAACTCTCTCATTAGTGATGATGTGGGTGTATTTGTCACATCATAAATGTCTACTATGCCTTGTTATCAATTTTTTACTATTTCCGCTCATTTCAAAAAATCAGGTTAGATAAAAATTTACTGTCTGTTAGGGCCTGTCAAAAAAGATCACTGATTATGAGATAAGCGAGGAAAAAAGTCTGTGATCTCTGATAAAACTGATCCACATTGTGTTAGGATTTTCAGAAATTTAAAAAATAATCAGTAGTCTGAACTATGCAATCTTGAACAACTGATAATGATGGCGGGTGACATTTGAATTCCTTAACTATGAACAATGAACCGTTATAGAAATTTGATTCCTCGAAAGACCATTCTTACTCAATTTTGAAATTTTGAAACTCAGCTTTAGGAATCGTTGACTTAAGTTTTCGAACTTTGTTTATCCAGAATTTGACCTCGGCACTTTTGATTGGTTTGGTCTTAAGATTTTGAGACTCTTTTGAGAAAGCTCTGCACTCTATTAGAACG</canonical>
            <polymorphic>AAAGCAGAACCCATTCTCTGCATTCCACAATTTTTCTGTGTCTATTTTTTTCCGTACCTTCTTTTTTTGAAACAAACAAAAGCAGATGACCGGAAACGCCAAATTAGTCACTGTAGAAGGCATTCCGATGGTGTCTGACAGGAAAAATTATGGTGTATCACAAGATATTGGTATTTATCGTATAACCAACCAACTTAACCACCTGATTAGTGGAGAAGGTCATCATGTACCTGATATCACAGATTCCAGATGACACCATTTCCCTTTTAAGTTCTTTTAATTTCTCTCTTTTCCCTTTTCTTCTTATCTTATTCTAAACATTCCTTCATTTTTTCTCCTCTTCTCTTCCTTTTTCCCCAATCGTTTACCCCCTTGTCAACAGAAGAAAAAACATTGATTGATCATCACATCATTTTCTTTTTCTCACATTCTCTCCCCCTTATTTGATTACACCCCATTTTTAGTGTCCTCCTATTGTTTGGAAATATGAGAACTCTCTSATTAGTGATGATGTGGGTGTATTTGTCACATCATAAATGTCTACTATGCCTTGTTATCAATTTTTTACTATTTCCGCTCATTTCAAAAAATCAGGTTAGATAAAAATTTACTGTCTGTTAGGGCCTGTCAAAAAAGATCACTGATTATGAGATAAGCGAGGAAAAAAGTCTGTGATCTCTGATAAAACTGATCCACATTGTGTTAGGATTTTCAGAAATTTAAAAAATAATCAGTAGTCTGAACTATGCAATCTTGAACAACTGATAATGATGGCGGGTGACATTTGAATTCCTTAACTATGAACAATGAACCGTTATAGAAATTTGATTCCTCGAAAGACCATTCTTACTCAATTTTGAAATTTTGAAACTCAGCTTTAGGAATCGTTGACTTAAGTTTTCGAACTTTGTTTATCCAGAATTTGACCTCGGCACTTTTGATTGGTTTGGTCTTAAGATTTTGAGACTCTTTTGAGAAAGCTCTGCACTCTATTAGAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTTTTTCTCACATTCTCTC</pcr_primer_p1>
		<pcr_primer_p2>CCTCGCTTATCTCATAATCAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTTTTTCTCACATTCTCTCCCCCTTATTTGATTACACCCCATTTTTAGTGTCCTCCTATTGTTTGGAAATATGAGAACTCTCTCATTAGTGATGATGTGGGTGTATTTGTCACATCATAAATGTCTACTATGCCTTGTTATCAATTTTTTACTATTTCCGCTCATTTCAAAAAATCAGGTTAGATAAAAATTTACTGTCTGTTAGGGCCTGTCAAAAAAGATCACTGATTATGAGATAAGCGAGG</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTTTTTCTCACATTCTCTCCCCCTTATTTGATTACACCCCATTTTTAGTGTCCTCCTATTGTTTGGAAATATGAGAACTCTCTSATTAGTGATGATGTGGGTGTATTTGTCACATCATAAATGTCTACTATGCCTTGTTATCAATTTTTTACTATTTCCGCTCATTTCAAAAAATCAGGTTAGATAAAAATTTACTGTCTGTTAGGGCCTGTCAAAAAAGATCACTGATTATGAGATAAGCGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb293</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1460131</contig_pos>
        <strand>+</strand>
        <context>GCAGTTGAAC[C/T]ATCAGCAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCACGTCATCTCATCAGCCACAACTACACCCACCATCTCAGCAGTTGAAC</left_flank>
        <right_flank>ATCAGCAAAGTGTGAAAACAACAAACAACTTTGCTAGAATAGAACAACAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGTGTCACTCCAACACAATTCCTAGAAGAAACTGGATCATTTTCAACTGAGAAAATGCAAAATTATCCTTTAATTCTACAATTGTTAAAAGAACATCGACAAAGTCAAGGGCAGTTAAATGGAATTGCAACAACAAGAAATGGAATGACCAATGGATTCTATGGAAATTCACCGGCTGGAATACTATCACACAATCGAAGACCGTCGTCATGCATAGATTTAAGTTCGCTAGATGGTGGAATAATCAATGGAGGAGCATGTAAGTGTTCTTGTTTATTCTTTTTTCAAAATTAATTTTTTATTTTGCAGTTATTCTTCCGACGCACCGCGGTGATTATTATTTTGATTCTGCTACATTCTCGCAGAATCTTCATCTTCCGAACTTTGCGCCAATAACAGCTTCAACGAAGACAACATCTTCTACAACAATGACATCTTCGGTGATTTCCACGTCATCTCATCAGCCACAACTACACCCACCATCTCAGCAGTTGAACTATCAGCAAAGTGTGAAAACAACAAACAACTTTGCTAGAATAGAACAACACAATGGGTGAGAAAAGAGTTTCTGAATTGAAAAATCTTATTTCCCAGGTTTCAGCAATTTGATTCTTCCACCGCCTCCACCATATCAACAGCCTCAACAACTGGTCAATTAGAGAGATAGAATAATTAGAATTAAAGCAACAACAAAAAATTCGACAAAAAAGTTCAAGACATCCTCATTCATCATCATCATTTTCAACACGTGGTTCTGCAATTCTCAGTGATTCTTTTTGACACTTTTATACATCTGTTTTGTTTTCTTTTCTCAGCTTTTCAATTTATATAGTTCGTATAGAAGACTTGCCCCCTGAATTCCTTCTCTTCACACGCATATTATTTGTTCGGGTTGAGAAGATTCTGACTCTCCTGTTTGAATAATACGCTGTTCTTCCAAACACGTCTTTTGCTCAATTCCCCCACACGAAAAACCATGCTCAATGTCACTCTTGTTT</canonical>
            <polymorphic>CCAGTGTCACTCCAACACAATTCCTAGAAGAAACTGGATCATTTTCAACTGAGAAAATGCAAAATTATCCTTTAATTCTACAATTGTTAAAAGAACATCGACAAAGTCAAGGGCAGTTAAATGGAATTGCAACAACAAGAAATGGAATGACCAATGGATTCTATGGAAATTCACCGGCTGGAATACTATCACACAATCGAAGACCGTCGTCATGCATAGATTTAAGTTCGCTAGATGGTGGAATAATCAATGGAGGAGCATGTAAGTGTTCTTGTTTATTCTTTTTTCAAAATTAATTTTTTATTTTGCAGTTATTCTTCCGACGCACCGCGGTGATTATTATTTTGATTCTGCTACATTCTCGCAGAATCTTCATCTTCCGAACTTTGCGCCAATAACAGCTTCAACGAAGACAACATCTTCTACAACAATGACATCTTCGGTGATTTCCACGTCATCTCATCAGCCACAACTACACCCACCATCTCAGCAGTTGAACYATCAGCAAAGTGTGAAAACAACAAACAACTTTGCTAGAATAGAACAACACAATGGGTGAGAAAAGAGTTTCTGAATTGAAAAATCTTATTTCCCAGGTTTCAGCAATTTGATTCTTCCACCGCCTCCACCATATCAACAGCCTCAACAACTGGTCAATTAGAGAGATAGAATAATTAGAATTAAAGCAACAACAAAAAATTCGACAAAAAAGTTCAAGACATCCTCATTCATCATCATCATTTTCAACACGTGGTTCTGCAATTCTCAGTGATTCTTTTTGACACTTTTATACATCTGTTTTGTTTTCTTTTCTCAGCTTTTCAATTTATATAGTTCGTATAGAAGACTTGCCCCCTGAATTCCTTCTCTTCACACGCATATTATTTGTTCGGGTTGAGAAGATTCTGACTCTCCTGTTTGAATAATACGCTGTTCTTCCAAACACGTCTTTTGCTCAATTCCCCCACACGAAAAACCATGCTCAATGTCACTCTTGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTGATTATTATTTTGATTCTG</pcr_primer_p1>
		<pcr_primer_p2>AATTCAGAAACTCTTTTCTCACC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CGGTGATTATTATTTTGATTCTGCTACATTCTCGCAGAATCTTCATCTTCCGAACTTTGCGCCAATAACAGCTTCAACGAAGACAACATCTTCTACAACAATGACATCTTCGGTGATTTCCACGTCATCTCATCAGCCACAACTACACCCACCATCTCAGCAGTTGAACTATCAGCAAAGTGTGAAAACAACAAACAACTTTGCTAGAATAGAACAACACAATGGGTGAGAAAAGAGTTTCTGAATT</canonical_amplicon>
		<polymorphic_amplicon>CGGTGATTATTATTTTGATTCTGCTACATTCTCGCAGAATCTTCATCTTCCGAACTTTGCGCCAATAACAGCTTCAACGAAGACAACATCTTCTACAACAATGACATCTTCGGTGATTTCCACGTCATCTCATCAGCCACAACTACACCCACCATCTCAGCAGTTGAACYATCAGCAAAGTGTGAAAACAACAAACAACTTTGCTAGAATAGAACAACACAATGGGTGAGAAAAGAGTTTCTGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb294</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1463709</contig_pos>
        <strand>+</strand>
        <context>CGTACACAAG[A/G]CATATGGTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAAATTTCCCAATTTTTGACACATTTTGTCTCCGGAAGACGTACACAAG</left_flank>
        <right_flank>CATATGGTCAGTTGGACGAAAAGAAAGACGAGACAATGATGAAATATTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCTTTGGTTTGATTAAACTTGAAGTTTTCCAAGAATTTTTGAAAAAGTTCGAAATTCTCCAATCACCAAGCAGTAGTACAGTATAAGAAGAAAGGGTAAAAAATAGTGAATTTGCAAAAAACATCAAACCTGTAAAAGAGAGGCCCTCTAACCTTGAGCCAGTTTATCTCGGTACCTGTCAAAGATATAAAATAGTTGTCCACTAATAAATTGTTTATCATAATATCAAAAACATTTTATCGGTTGACAGAATTTTGATATCTTGCTTGTGAGTCAAGATAAATCAGCTTGAACTTGACAGTGTGGGGCCCTTCTATTACAGGTTGGATTTCAAATGCTTTCTGAGTGAAATACAAAATGCCAAATTGTCATTAATGTTCTTAAACCACCCCCACGAAATTCAAATCTGTTCTCCAAATCTCGGTTTTTGATAGACAGCTTGGGAGGCGAAATTTCCCAATTTTTGACACATTTTGTCTCCGGAAGACGTACACAAGGCATATGGTCAGTTGGACGAAAAGAAAGACGAGACAATGATGAAATATTGAAATTTCCTCTTTATTTTTATGGAAATTGAAACGCAGAGAGGATTGTAGAAAAAGAAAACAAAAAAAGAGTACCTCACGGTATTTCAAACCAATGGGTCGAAAATCGCGCCTCAGCGAACGTGAAAAATCACTGCGCAACGTGTCCAATTTTCTTTGGCTGAAGATCAAACTTTTAAACGTTGGGCGAAAAAATCGCGAGTTGCAATGCGTTGATTAAAAATATTTAGGTCAACTCCCCGCCAACTTTTAAATTATCAAACTCCCCCTCGCCTCAAAGTCATCTCGTGCGCGATTTTCGACCCGTTGGTTTGAAATACCGTGAGTACTTGAATTATTTTCTCACGGACTGGAAATTGAGATGAATGTTAGTGCTCAAAGAGCAGATTTAGAAAAGAAAGAGATGACGTTGAAAATACTATTTGAGATAATTCGAAATTTGGCAAGGTTACA</canonical>
            <polymorphic>CTTCTTTGGTTTGATTAAACTTGAAGTTTTCCAAGAATTTTTGAAAAAGTTCGAAATTCTCCAATCACCAAGCAGTAGTACAGTATAAGAAGAAAGGGTAAAAAATAGTGAATTTGCAAAAAACATCAAACCTGTAAAAGAGAGGCCCTCTAACCTTGAGCCAGTTTATCTCGGTACCTGTCAAAGATATAAAATAGTTGTCCACTAATAAATTGTTTATCATAATATCAAAAACATTTTATCGGTTGACAGAATTTTGATATCTTGCTTGTGAGTCAAGATAAATCAGCTTGAACTTGACAGTGTGGGGCCCTTCTATTACAGGTTGGATTTCAAATGCTTTCTGAGTGAAATACAAAATGCCAAATTGTCATTAATGTTCTTAAACCACCCCCACGAAATTCAAATCTGTTCTCCAAATCTCGGTTTTTGATAGACAGCTTGGGAGGCGAAATTTCCCAATTTTTGACACATTTTGTCTCCGGAAGACGTACACAAGRCATATGGTCAGTTGGACGAAAAGAAAGACGAGACAATGATGAAATATTGAAATTTCCTCTTTATTTTTATGGAAATTGAAACGCAGAGAGGATTGTAGAAAAAGAAAACAAAAAAAGAGTACCTCACGGTATTTCAAACCAATGGGTCGAAAATCGCGCCTCAGCGAACGTGAAAAATCACTGCGCAACGTGTCCAATTTTCTTTGGCTGAAGATCAAACTTTTAAACGTTGGGCGAAAAAATCGCGAGTTGCAATGCGTTGATTAAAAATATTTAGGTCAACTCCCCGCCAACTTTTAAATTATCAAACTCCCCCTCGCCTCAAAGTCATCTCGTGCGCGATTTTCGACCCGTTGGTTTGAAATACCGTGAGTACTTGAATTATTTTCTCACGGACTGGAAATTGAGATGAATGTTAGTGCTCAAAGAGCAGATTTAGAAAAGAAAGAGATGACGTTGAAAATACTATTTGAGATAATTCGAAATTTGGCAAGGTTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAATGCTTTCTGAGTGAAATAC</pcr_primer_p1>
		<pcr_primer_p2>CGTTTCAATTTCCATAAAAATAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAATGCTTTCTGAGTGAAATACAAAATGCCAAATTGTCATTAATGTTCTTAAACCACCCCCACGAAATTCAAATCTGTTCTCCAAATCTCGGTTTTTGATAGACAGCTTGGGAGGCGAAATTTCCCAATTTTTGACACATTTTGTCTCCGGAAGACGTACACAAGGCATATGGTCAGTTGGACGAAAAGAAAGACGAGACAATGATGAAATATTGAAATTTCCTCTTTATTTTTATGGAAATTGAAACG</canonical_amplicon>
		<polymorphic_amplicon>CAAATGCTTTCTGAGTGAAATACAAAATGCCAAATTGTCATTAATGTTCTTAAACCACCCCCACGAAATTCAAATCTGTTCTCCAAATCTCGGTTTTTGATAGACAGCTTGGGAGGCGAAATTTCCCAATTTTTGACACATTTTGTCTCCGGAAGACGTACACAAGRCATATGGTCAGTTGGACGAAAAGAAAGACGAGACAATGATGAAATATTGAAATTTCCTCTTTATTTTTATGGAAATTGAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb295</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1463613</contig_pos>
        <strand>+</strand>
        <context>CCACGAAATT[C/T]AAATCTGTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACAAAATGCCAAATTGTCATTAATGTTCTTAAACCACCCCCACGAAATT</left_flank>
        <right_flank>AAATCTGTTCTCCAAATCTCGGTTTTTGATAGACAGCTTGGGAGGCGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCCCTTAGGGAAGATTCGAACAGTTGGAAGTGGTGCAAAAAAAGAGATTTATTAGGTGTTGAGAAGAAGAGGTCCATTCGAAAATAACAAGGCCCTTCTTTGGTTTGATTAAACTTGAAGTTTTCCAAGAATTTTTGAAAAAGTTCGAAATTCTCCAATCACCAAGCAGTAGTACAGTATAAGAAGAAAGGGTAAAAAATAGTGAATTTGCAAAAAACATCAAACCTGTAAAAGAGAGGCCCTCTAACCTTGAGCCAGTTTATCTCGGTACCTGTCAAAGATATAAAATAGTTGTCCACTAATAAATTGTTTATCATAATATCAAAAACATTTTATCGGTTGACAGAATTTTGATATCTTGCTTGTGAGTCAAGATAAATCAGCTTGAACTTGACAGTGTGGGGCCCTTCTATTACAGGTTGGATTTCAAATGCTTTCTGAGTGAAATACAAAATGCCAAATTGTCATTAATGTTCTTAAACCACCCCCACGAAATTCAAATCTGTTCTCCAAATCTCGGTTTTTGATAGACAGCTTGGGAGGCGAAATTTCCCAATTTTTGACACATTTTGTCTCCGGAAGACGTACACAAGGCATATGGTCAGTTGGACGAAAAGAAAGACGAGACAATGATGAAATATTGAAATTTCCTCTTTATTTTTATGGAAATTGAAACGCAGAGAGGATTGTAGAAAAAGAAAACAAAAAAAGAGTACCTCACGGTATTTCAAACCAATGGGTCGAAAATCGCGCCTCAGCGAACGTGAAAAATCACTGCGCAACGTGTCCAATTTTCTTTGGCTGAAGATCAAACTTTTAAACGTTGGGCGAAAAAATCGCGAGTTGCAATGCGTTGATTAAAAATATTTAGGTCAACTCCCCGCCAACTTTTAAATTATCAAACTCCCCCTCGCCTCAAAGTCATCTCGTGCGCGATTTTCGACCCGTTGGTTTGAAATACCGTGAGTACTTGAATTATTTTCTCACGGACTGGAAAT</canonical>
            <polymorphic>GTTCCCTTAGGGAAGATTCGAACAGTTGGAAGTGGTGCAAAAAAAGAGATTTATTAGGTGTTGAGAAGAAGAGGTCCATTCGAAAATAACAAGGCCCTTCTTTGGTTTGATTAAACTTGAAGTTTTCCAAGAATTTTTGAAAAAGTTCGAAATTCTCCAATCACCAAGCAGTAGTACAGTATAAGAAGAAAGGGTAAAAAATAGTGAATTTGCAAAAAACATCAAACCTGTAAAAGAGAGGCCCTCTAACCTTGAGCCAGTTTATCTCGGTACCTGTCAAAGATATAAAATAGTTGTCCACTAATAAATTGTTTATCATAATATCAAAAACATTTTATCGGTTGACAGAATTTTGATATCTTGCTTGTGAGTCAAGATAAATCAGCTTGAACTTGACAGTGTGGGGCCCTTCTATTACAGGTTGGATTTCAAATGCTTTCTGAGTGAAATACAAAATGCCAAATTGTCATTAATGTTCTTAAACCACCCCCACGAAATTYAAATCTGTTCTCCAAATCTCGGTTTTTGATAGACAGCTTGGGAGGCGAAATTTCCCAATTTTTGACACATTTTGTCTCCGGAAGACGTACACAAGGCATATGGTCAGTTGGACGAAAAGAAAGACGAGACAATGATGAAATATTGAAATTTCCTCTTTATTTTTATGGAAATTGAAACGCAGAGAGGATTGTAGAAAAAGAAAACAAAAAAAGAGTACCTCACGGTATTTCAAACCAATGGGTCGAAAATCGCGCCTCAGCGAACGTGAAAAATCACTGCGCAACGTGTCCAATTTTCTTTGGCTGAAGATCAAACTTTTAAACGTTGGGCGAAAAAATCGCGAGTTGCAATGCGTTGATTAAAAATATTTAGGTCAACTCCCCGCCAACTTTTAAATTATCAAACTCCCCCTCGCCTCAAAGTCATCTCGTGCGCGATTTTCGACCCGTTGGTTTGAAATACCGTGAGTACTTGAATTATTTTCTCACGGACTGGAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>354 147 142 131 98 56 53 19</canonical_bands>
                <polymorphic_bands>354 200 142 131 98 56 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATGCTTTCTGAGTGAAATAC</pcr_primer_p1>
		<pcr_primer_p2>CGTTTCAATTTCCATAAAAATAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAATGCTTTCTGAGTGAAATACAAAATGCCAAATTGTCATTAATGTTCTTAAACCACCCCCACGAAATTCAAATCTGTTCTCCAAATCTCGGTTTTTGATAGACAGCTTGGGAGGCGAAATTTCCCAATTTTTGACACATTTTGTCTCCGGAAGACGTACACAAGGCATATGGTCAGTTGGACGAAAAGAAAGACGAGACAATGATGAAATATTGAAATTTCCTCTTTATTTTTATGGAAATTGAAACG</canonical_amplicon>
		<polymorphic_amplicon>CAAATGCTTTCTGAGTGAAATACAAAATGCCAAATTGTCATTAATGTTCTTAAACCACCCCCACGAAATTYAAATCTGTTCTCCAAATCTCGGTTTTTGATAGACAGCTTGGGAGGCGAAATTTCCCAATTTTTGACACATTTTGTCTCCGGAAGACGTACACAAGGCATATGGTCAGTTGGACGAAAAGAAAGACGAGACAATGATGAAATATTGAAATTTCCTCTTTATTTTTATGGAAATTGAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb296</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1463590</contig_pos>
        <strand>+</strand>
        <context>TCATTAATGT[C/T]CTTAAACCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCAAATGCTTTCTGAGTGAAATACAAAATGCCAAATTGTCATTAATGT</left_flank>
        <right_flank>CTTAAACCACCCCCACGAAATTCAAATCTGTTCTCCAAATCTCGGTTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTCTGCACGTCTTCTTTTCGAGTTCCCTTAGGGAAGATTCGAACAGTTGGAAGTGGTGCAAAAAAAGAGATTTATTAGGTGTTGAGAAGAAGAGGTCCATTCGAAAATAACAAGGCCCTTCTTTGGTTTGATTAAACTTGAAGTTTTCCAAGAATTTTTGAAAAAGTTCGAAATTCTCCAATCACCAAGCAGTAGTACAGTATAAGAAGAAAGGGTAAAAAATAGTGAATTTGCAAAAAACATCAAACCTGTAAAAGAGAGGCCCTCTAACCTTGAGCCAGTTTATCTCGGTACCTGTCAAAGATATAAAATAGTTGTCCACTAATAAATTGTTTATCATAATATCAAAAACATTTTATCGGTTGACAGAATTTTGATATCTTGCTTGTGAGTCAAGATAAATCAGCTTGAACTTGACAGTGTGGGGCCCTTCTATTACAGGTTGGATTTCAAATGCTTTCTGAGTGAAATACAAAATGCCAAATTGTCATTAATGTTCTTAAACCACCCCCACGAAATTCAAATCTGTTCTCCAAATCTCGGTTTTTGATAGACAGCTTGGGAGGCGAAATTTCCCAATTTTTGACACATTTTGTCTCCGGAAGACGTACACAAGGCATATGGTCAGTTGGACGAAAAGAAAGACGAGACAATGATGAAATATTGAAATTTCCTCTTTATTTTTATGGAAATTGAAACGCAGAGAGGATTGTAGAAAAAGAAAACAAAAAAAGAGTACCTCACGGTATTTCAAACCAATGGGTCGAAAATCGCGCCTCAGCGAACGTGAAAAATCACTGCGCAACGTGTCCAATTTTCTTTGGCTGAAGATCAAACTTTTAAACGTTGGGCGAAAAAATCGCGAGTTGCAATGCGTTGATTAAAAATATTTAGGTCAACTCCCCGCCAACTTTTAAATTATCAAACTCCCCCTCGCCTCAAAGTCATCTCGTGCGCGATTTTCGACCCGTTGGTTTGAAATACCGTGAGTACTTGAA</canonical>
            <polymorphic>GAGTCTGCACGTCTTCTTTTCGAGTTCCCTTAGGGAAGATTCGAACAGTTGGAAGTGGTGCAAAAAAAGAGATTTATTAGGTGTTGAGAAGAAGAGGTCCATTCGAAAATAACAAGGCCCTTCTTTGGTTTGATTAAACTTGAAGTTTTCCAAGAATTTTTGAAAAAGTTCGAAATTCTCCAATCACCAAGCAGTAGTACAGTATAAGAAGAAAGGGTAAAAAATAGTGAATTTGCAAAAAACATCAAACCTGTAAAAGAGAGGCCCTCTAACCTTGAGCCAGTTTATCTCGGTACCTGTCAAAGATATAAAATAGTTGTCCACTAATAAATTGTTTATCATAATATCAAAAACATTTTATCGGTTGACAGAATTTTGATATCTTGCTTGTGAGTCAAGATAAATCAGCTTGAACTTGACAGTGTGGGGCCCTTCTATTACAGGTTGGATTTCAAATGCTTTCTGAGTGAAATACAAAATGCCAAATTGTCATTAATGTYCTTAAACCACCCCCACGAAATTCAAATCTGTTCTCCAAATCTCGGTTTTTGATAGACAGCTTGGGAGGCGAAATTTCCCAATTTTTGACACATTTTGTCTCCGGAAGACGTACACAAGGCATATGGTCAGTTGGACGAAAAGAAAGACGAGACAATGATGAAATATTGAAATTTCCTCTTTATTTTTATGGAAATTGAAACGCAGAGAGGATTGTAGAAAAAGAAAACAAAAAAAGAGTACCTCACGGTATTTCAAACCAATGGGTCGAAAATCGCGCCTCAGCGAACGTGAAAAATCACTGCGCAACGTGTCCAATTTTCTTTGGCTGAAGATCAAACTTTTAAACGTTGGGCGAAAAAATCGCGAGTTGCAATGCGTTGATTAAAAATATTTAGGTCAACTCCCCGCCAACTTTTAAATTATCAAACTCCCCCTCGCCTCAAAGTCATCTCGTGCGCGATTTTCGACCCGTTGGTTTGAAATACCGTGAGTACTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCAAATGCTTTCTGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCAATTTCCATAAAAATAAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTCAAATGCTTTCTGAGTGAAATACAAAATGCCAAATTGTCATTAATGTTCTTAAACCACCCCCACGAAATTCAAATCTGTTCTCCAAATCTCGGTTTTTGATAGACAGCTTGGGAGGCGAAATTTCCCAATTTTTGACACATTTTGTCTCCGGAAGACGTACACAAGGCATATGGTCAGTTGGACGAAAAGAAAGACGAGACAATGATGAAATATTGAAATTTCCTCTTTATTTTTATGGAAATTGA</canonical_amplicon>
		<polymorphic_amplicon>ATTTCAAATGCTTTCTGAGTGAAATACAAAATGCCAAATTGTCATTAATGTYCTTAAACCACCCCCACGAAATTCAAATCTGTTCTCCAAATCTCGGTTTTTGATAGACAGCTTGGGAGGCGAAATTTCCCAATTTTTGACACATTTTGTCTCCGGAAGACGTACACAAGGCATATGGTCAGTTGGACGAAAAGAAAGACGAGACAATGATGAAATATTGAAATTTCCTCTTTATTTTTATGGAAATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb297</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1486234</contig_pos>
        <strand></strand>
        <context>tgagataagt[A/G]agctcaaact</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAACCTGTATTCTAACATTTGTATATCTTGCATAGAAATTGAGATAAGT</left_flank>
        <right_flank>AGCTCAAACTTGACAGCCTGTGATGCCCTTCTATTACAAGTTTTAAGGTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGAATACAATAACTGTTAAGAATAGCTCCAGAAAATAAAAACATGAAATATCGATAAAACGGGCGGAGAACCACCAGAAAAAATAATGTTCCGGCGACATATAAATGTCTGGATTAAATTGTCAGAACTCCCTCTGTCGAAGAGCATCGCGCGGAGGCTCCCGACCCAAAAACTTTTTGGAGTCGGGAGTTGTTCGAAACGGGCACAGAAGTAGTAAACTGATTATTGAATAAGCGAGTGAGAGACGACAACGAAGAGCCGTCAAAAAGGACAAGATCCAAAAAAGAAAACGGAAGAAAAACTGACTCTTCAAGACGTGTTGATCTAGCTGTGTGCATCGAATTCCGGTTCGAAAAGTCCGATTCGCGGTAACTCTGTGGTAGTGATCTGAAAAATAATCATTAGAAGTTAGTTTTAAAGCCCAAAACGTGTATATGTTAATACCGTAAAACCTGTATTCTAACATTTGTATATCTTGCATAGAAATTGAGATAAGTAAGCTCAAACTTGACAGCCTGTGATGCCCTTCTATTACAAGTTTTAAGGTGACTGGTTAAGTAGATGTTTCAATTTTTAAGTTTGGACGAAAGGTACAAAAGAATTCTAAGGCCGTTCTTTTACAGATTTTAAGGTGAATTTCTTATGATTTATCAACCCAGAAGATTCATTTTAACCTTAAACTTTTGGATGTTTACAGTAGTTTCGATTGATTTCAATTGTTTCGAACAATTCTTCTGAAAATGATAAGATTACTATCTTATTATTAGAGTTTTATTCGAAGCCGGACGCATGGACCCAAAACAAAATGAGAACCTGATTCCGTATGAGTAGTTTTATTTCTGAGGTTCCAGAACTTAATTAAGCACCTAATGATTAATTGGCATTAAAAAAATATTAGTTTGTATAATTTTTCTAAACAAAGTCTATCTCAATAACCGAGATAAAAAATGAGCGAATTCATACGATACAGTGTTATTCAGAGCTATCGGACTTATTTT</canonical>
            <polymorphic>GTGGAATACAATAACTGTTAAGAATAGCTCCAGAAAATAAAAACATGAAATATCGATAAAACGGGCGGAGAACCACCAGAAAAAATAATGTTCCGGCGACATATAAATGTCTGGATTAAATTGTCAGAACTCCCTCTGTCGAAGAGCATCGCGCGGAGGCTCCCGACCCAAAAACTTTTTGGAGTCGGGAGTTGTTCGAAACGGGCACAGAAGTAGTAAACTGATTATTGAATAAGCGAGTGAGAGACGACAACGAAGAGCCGTCAAAAAGGACAAGATCCAAAAAAGAAAACGGAAGAAAAACTGACTCTTCAAGACGTGTTGATCTAGCTGTGTGCATCGAATTCCGGTTCGAAAAGTCCGATTCGCGGTAACTCTGTGGTAGTGATCTGAAAAATAATCATTAGAAGTTAGTTTTAAAGCCCAAAACGTGTATATGTTAATACCGTAAAACCTGTATTCTAACATTTGTATATCTTGCATAGAAATTGAGATAAGTRAGCTCAAACTTGACAGCCTGTGATGCCCTTCTATTACAAGTTTTAAGGTGACTGGTTAAGTAGATGTTTCAATTTTTAAGTTTGGACGAAAGGTACAAAAGAATTCTAAGGCCGTTCTTTTACAGATTTTAAGGTGAATTTCTTATGATTTATCAACCCAGAAGATTCATTTTAACCTTAAACTTTTGGATGTTTACAGTAGTTTCGATTGATTTCAATTGTTTCGAACAATTCTTCTGAAAATGATAAGATTACTATCTTATTATTAGAGTTTTATTCGAAGCCGGACGCATGGACCCAAAACAAAATGAGAACCTGATTCCGTATGAGTAGTTTTATTTCTGAGGTTCCAGAACTTAATTAAGCACCTAATGATTAATTGGCATTAAAAAAATATTAGTTTGTATAATTTTTCTAAACAAAGTCTATCTCAATAACCGAGATAAAAAATGAGCGAATTCATACGATACAGTGTTATTCAGAGCTATCGGACTTATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTAACTCTGTGGTAGTGATCTG</pcr_primer_p1>
		<pcr_primer_p2>GCCTTAGAATTCTTTTGTACCTT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GGTAACTCTGTGGTAGTGATCTGAAAAATAATCATTAGAAGTTAGTTTTAAAGCCCAAAACGTGTATATGTTAATACCGTAAAACCTGTATTCTAACATTTGTATATCTTGCATAGAAATTGAGATAAGTAAGCTCAAACTTGACAGCCTGTGATGCCCTTCTATTACAAGTTTTAAGGTGACTGGTTAAGTAGATGTTTCAATTTTTAAGTTTGGACGAAAGGTACAAAAGAATTCTAAGGC</canonical_amplicon>
		<polymorphic_amplicon>GGTAACTCTGTGGTAGTGATCTGAAAAATAATCATTAGAAGTTAGTTTTAAAGCCCAAAACGTGTATATGTTAATACCGTAAAACCTGTATTCTAACATTTGTATATCTTGCATAGAAATTGAGATAAGTRAGCTCAAACTTGACAGCCTGTGATGCCCTTCTATTACAAGTTTTAAGGTGACTGGTTAAGTAGATGTTTCAATTTTTAAGTTTGGACGAAAGGTACAAAAGAATTCTAAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb298</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1488007</contig_pos>
        <strand>+</strand>
        <context>GGAAATAGAA[C/T]GCTGGATAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGTATTCTGAAATCATTTTATGATAAAGTGATAGGTTAAGGAAATAGAA</left_flank>
        <right_flank>GCTGGATAATATTTAGCAAAAAAAAAGATAGAAGGAATTAGCCATTTCAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTCTTGTTTTCGACGTCGAAACAATTGTGTCACTGTCTCTGGCAGTGGACCACAAAAGCTATGAAATTGTATGAAAATTTCTTTAAATGAAAAATTAGGAATTCAGGAGTCAGGAATCAAAAAAAACTGAAGAATAAGTGGAAATCTGATCGGATACGGTATCAAGAGTTTTCAAACATTTAGCTTAATTTATGCCAGATTTGTATAAAAATCTTACGGTGGAATTGGCGGTGGAGCGATGAATGTTCCGATGAGTGGTTGCTTCATCGTGCCGCTCCGACTGGTTGCTGGTACTGCCACAAATTGTTTCATTTTGATAGATGAAAACTAATTACTGAAACTGAGATTTATTGTGCTCAGGAGCCAGAGGTAGCAATCACATTCAACCGCTATCCACCGGGAGTTTCATCCAGAAAGAGAAGGCGCTGCTTATGGTGAGAAGCTGGACCGTATTCTGAAATCATTTTATGATAAAGTGATAGGTTAAGGAAATAGAATGCTGGATAATATTTAGCAAAAAAAAAGATAGAAGGAATTAGCCATTTCAGATAGATTTTGAAGTTAAAAAGAAAAAAAAACCTGTCATAGAAGGGCCCTCTTTGTTTGAGCAATTTTATCTTGGACCATATGCAAGGTAGCAAAAATATGTCAACTGAAAAAGCATTTCTGATATTATGATAAACAATTTATCAGTGGACAACTTTTTGATATCTTTCACGAGAATCGAGATAAATTGGCTCAAAAGTTAGAGGGCCCTTCTATTAGAGGTTTTACTGTAGGAGAGTATTAGAAGGAGTTTTTATTTCAGATGTTTCAGTTCAAGAATCCAGGCAGAGATCACAATCCGTTTCCTGAATGTTTGATCTCAGACTTCAAAGACCTCTCCAAAAAATTAATTAATATCATTTTAATTTCCAGAAAAAAATTATAGATTGAATATGAGACATAGACTTGCGTAGGAATTCAAGTGTTATAATAAGAATAAAACAAAGCGATTC</canonical>
            <polymorphic>CTCTCTTGTTTTCGACGTCGAAACAATTGTGTCACTGTCTCTGGCAGTGGACCACAAAAGCTATGAAATTGTATGAAAATTTCTTTAAATGAAAAATTAGGAATTCAGGAGTCAGGAATCAAAAAAAACTGAAGAATAAGTGGAAATCTGATCGGATACGGTATCAAGAGTTTTCAAACATTTAGCTTAATTTATGCCAGATTTGTATAAAAATCTTACGGTGGAATTGGCGGTGGAGCGATGAATGTTCCGATGAGTGGTTGCTTCATCGTGCCGCTCCGACTGGTTGCTGGTACTGCCACAAATTGTTTCATTTTGATAGATGAAAACTAATTACTGAAACTGAGATTTATTGTGCTCAGGAGCCAGAGGTAGCAATCACATTCAACCGCTATCCACCGGGAGTTTCATCCAGAAAGAGAAGGCGCTGCTTATGGTGAGAAGCTGGACCGTATTCTGAAATCATTTTATGATAAAGTGATAGGTTAAGGAAATAGAAYGCTGGATAATATTTAGCAAAAAAAAAGATAGAAGGAATTAGCCATTTCAGATAGATTTTGAAGTTAAAAAGAAAAAAAAACCTGTCATAGAAGGGCCCTCTTTGTTTGAGCAATTTTATCTTGGACCATATGCAAGGTAGCAAAAATATGTCAACTGAAAAAGCATTTCTGATATTATGATAAACAATTTATCAGTGGACAACTTTTTGATATCTTTCACGAGAATCGAGATAAATTGGCTCAAAAGTTAGAGGGCCCTTCTATTAGAGGTTTTACTGTAGGAGAGTATTAGAAGGAGTTTTTATTTCAGATGTTTCAGTTCAAGAATCCAGGCAGAGATCACAATCCGTTTCCTGAATGTTTGATCTCAGACTTCAAAGACCTCTCCAAAAAATTAATTAATATCATTTTAATTTCCAGAAAAAAATTATAGATTGAATATGAGACATAGACTTGCGTAGGAATTCAAGTGTTATAATAAGAATAAAACAAAGCGATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATGAAAACTAATTACTGAAACTGA</pcr_primer_p1>
		<pcr_primer_p2>CAAAATCTATCTGAAATGGCTAA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AGATGAAAACTAATTACTGAAACTGAGATTTATTGTGCTCAGGAGCCAGAGGTAGCAATCACATTCAACCGCTATCCACCGGGAGTTTCATCCAGAAAGAGAAGGCGCTGCTTATGGTGAGAAGCTGGACCGTATTCTGAAATCATTTTATGATAAAGTGATAGGTTAAGGAAATAGAATGCTGGATAATATTTAGCAAAAAAAAAGATAGAAGGAATTAGCCATTTCAGATAGATTTTG</canonical_amplicon>
		<polymorphic_amplicon>AGATGAAAACTAATTACTGAAACTGAGATTTATTGTGCTCAGGAGCCAGAGGTAGCAATCACATTCAACCGCTATCCACCGGGAGTTTCATCCAGAAAGAGAAGGCGCTGCTTATGGTGAGAAGCTGGACCGTATTCTGAAATCATTTTATGATAAAGTGATAGGTTAAGGAAATAGAAYGCTGGATAATATTTAGCAAAAAAAAAGATAGAAGGAATTAGCCATTTCAGATAGATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb299</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1495706</contig_pos>
        <strand>+</strand>
        <context>TCTTGTGATA[C/G]TAATCGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTGAAAACTACAGTAATTTTTGCAACGGTAGAAGCAAGTTCTTGTGATA</left_flank>
        <right_flank>TAATCGAAAAATAGAAGACTCATCTTTTCAAGTACATTTTATCAGTTGAC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGAGTCTACTATGGTACCCTTTGTTGTGAGAACGATTCAGATGAAATGTTCCGTTCGTGGTTGTGGAACATCTTCTTTGGAGAAAATGAGGAAATGGATGAATTATTGAAGAATACTGCAAGTTTTGTGCAAAGGAGTAGAGAAAGAATGCATTTCGGTCATGTAAGTGGATTCGAAAATTGTTGTAATTTCAATGTATTTTTAGGGAAATGTCGAGATTGCTCACATTGTTGGACCATTTATTGTAACTCTTCTTTTCACAGCTTTGTCTCTTTTACAGAACTATCATATCAATGACGGAATGTTTACTTGAATAAATGAACTATTCTAGATTACTTGAATTTTTTAAACGAAAAACTCCAGTAAAATTTGGACCTGGTTGGTTCAAAAAACTACGGTAATCCTTGTCCCGTTGAATAAACGACAATTACAATAGAAAGCTTTTGCTTTGAAAACTACAGTAATTTTTGCAACGGTAGAAGCAAGTTCTTGTGATACTAATCGAAAAATAGAAGACTCATCTTTTCAAGTACATTTTATCAGTTGACGAGTTTTCGATATCTATTGAAGAAACCGAGATAATTGAGCTTAAAGAGCACGCATAGGGTGAGATCCTATTACGGTACTCAAACTTTTTTGTTATGCAATCGGAAACATTATCTTTGTATGAATGCTTTCTGAGAGACTACAATTGGTTTCCGTCCTTCTTGTCTAATATATTTTTCACTTTACCTCAATTCTTCCATTTTCTATTCACCATCTCTCTCCCACCCATATATTTTTGTTGTTATTTTTCATCAGTTCTCATAAAAATATAACTGAACTCTCGTCATTTCATTTTTCTCCCAGTTCTCTTTGTGCTTAGTGACTAACAAAAACTAAACAGATGTTTGGCGAAACGAGTCCGAATTTCACACTGTTTGCTCAATTGATTTTTATATGCCTGGCGTGTGTATGTGCTCGGCAGGCAACGGAGCTCATATAGCCTCATATATTGT</canonical>
            <polymorphic>AAGGAGTCTACTATGGTACCCTTTGTTGTGAGAACGATTCAGATGAAATGTTCCGTTCGTGGTTGTGGAACATCTTCTTTGGAGAAAATGAGGAAATGGATGAATTATTGAAGAATACTGCAAGTTTTGTGCAAAGGAGTAGAGAAAGAATGCATTTCGGTCATGTAAGTGGATTCGAAAATTGTTGTAATTTCAATGTATTTTTAGGGAAATGTCGAGATTGCTCACATTGTTGGACCATTTATTGTAACTCTTCTTTTCACAGCTTTGTCTCTTTTACAGAACTATCATATCAATGACGGAATGTTTACTTGAATAAATGAACTATTCTAGATTACTTGAATTTTTTAAACGAAAAACTCCAGTAAAATTTGGACCTGGTTGGTTCAAAAAACTACGGTAATCCTTGTCCCGTTGAATAAACGACAATTACAATAGAAAGCTTTTGCTTTGAAAACTACAGTAATTTTTGCAACGGTAGAAGCAAGTTCTTGTGATASTAATCGAAAAATAGAAGACTCATCTTTTCAAGTACATTTTATCAGTTGACGAGTTTTCGATATCTATTGAAGAAACCGAGATAATTGAGCTTAAAGAGCACGCATAGGGTGAGATCCTATTACGGTACTCAAACTTTTTTGTTATGCAATCGGAAACATTATCTTTGTATGAATGCTTTCTGAGAGACTACAATTGGTTTCCGTCCTTCTTGTCTAATATATTTTTCACTTTACCTCAATTCTTCCATTTTCTATTCACCATCTCTCTCCCACCCATATATTTTTGTTGTTATTTTTCATCAGTTCTCATAAAAATATAACTGAACTCTCGTCATTTCATTTTTCTCCCAGTTCTCTTTGTGCTTAGTGACTAACAAAAACTAAACAGATGTTTGGCGAAACGAGTCCGAATTTCACACTGTTTGCTCAATTGATTTTTATATGCCTGGCGTGTGTATGTGCTCGGCAGGCAACGGAGCTCATATAGCCTCATATATTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTTTGCTTTGAAAACTAC</pcr_primer_p1>
		<pcr_primer_p2>AGTCTCTCAGAAAGCATTCATAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGCTTTTGCTTTGAAAACTACAGTAATTTTTGCAACGGTAGAAGCAAGTTCTTGTGATACTAATCGAAAAATAGAAGACTCATCTTTTCAAGTACATTTTATCAGTTGACGAGTTTTCGATATCTATTGAAGAAACCGAGATAATTGAGCTTAAAGAGCACGCATAGGGTGAGATCCTATTACGGTACTCAAACTTTTTTGTTATGCAATCGGAAACATTATCTTTGTATGAATGCTTTCTGAGAGACT</canonical_amplicon>
		<polymorphic_amplicon>AAGCTTTTGCTTTGAAAACTACAGTAATTTTTGCAACGGTAGAAGCAAGTTCTTGTGATASTAATCGAAAAATAGAAGACTCATCTTTTCAAGTACATTTTATCAGTTGACGAGTTTTCGATATCTATTGAAGAAACCGAGATAATTGAGCTTAAAGAGCACGCATAGGGTGAGATCCTATTACGGTACTCAAACTTTTTTGTTATGCAATCGGAAACATTATCTTTGTATGAATGCTTTCTGAGAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb300</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1496475</contig_pos>
        <strand>+</strand>
        <context>GAATTATTAG[C/G]TTTGATCAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAGTACAAAGTTAGTCAGGTGAGTTATGCAGAGTAAAGGGGAATTATTAG</left_flank>
        <right_flank>TTTGATCAAATTATTAGGTTTGATTCCTATTTAGTTGGAAATCCAGAGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACCCATATATTTTTGTTGTTATTTTTCATCAGTTCTCATAAAAATATAACTGAACTCTCGTCATTTCATTTTTCTCCCAGTTCTCTTTGTGCTTAGTGACTAACAAAAACTAAACAGATGTTTGGCGAAACGAGTCCGAATTTCACACTGTTTGCTCAATTGATTTTTATATGCCTGGCGTGTGTATGTGCTCGGCAGGCAACGGAGCTCATATAGCCTCATATATTGTGACCTGGGCTCCTGTTTCCAAATTATATTTCCACATTTTTCATCTTTATTTCGTTGTTATCGTATCATTGGGTTTTTATCGTTGGGAAAAACTACAAAATTAGGGTGCACCGGTTACTGTGCCGTGAGAGAATTCTCGGAAAATCGGGTTGGGGAGAATTCAAGTTAACGTGACGACTACTTTTGAGAAAGCAGGCTAATTTTAGGAATGTGCAAAAATAGTACAAAGTTAGTCAGGTGAGTTATGCAGAGTAAAGGGGAATTATTAGGTTTGATCAAATTATTAGGTTTGATTCCTATTTAGTTGGAAATCCAGAGGATGATGATTCCGATGAGGAGAACGACGATAATGGCGATAATGATCATCATCTGAATAGACATATGTTGGTAGTTGTGAATTAGGTGCACCCTCTCTTTTTTGAAAGTTAGTTTTGAGGATCAATCCGAAATTCATTAAAAAACAAACTTACACGAGCATTCTGCCACCAGTACTTCTGACGAAGAGTGCGAGATGACTGCTGGAACTGAGAAGCTCCGCTCTGAAGAGCATCGGCACGATGGTCCAGGGAGCTGAGTTGAGCTTCACGCTCCATAACCTTGTTCACATTGTTCTGAAATCACATTTAATTTTCAAAAGATTCTCTGCATCTCCTCTTTCTCACACCTTCTACGTTCCGGAGTGTTTACTTAACTTGAAGATGCCCCGGTTGATAGGATAGGGAAACATGGAGAATTCAAAATAGTACAACACACAAAAGTGTCGTGACCTT</canonical>
            <polymorphic>CCACCCATATATTTTTGTTGTTATTTTTCATCAGTTCTCATAAAAATATAACTGAACTCTCGTCATTTCATTTTTCTCCCAGTTCTCTTTGTGCTTAGTGACTAACAAAAACTAAACAGATGTTTGGCGAAACGAGTCCGAATTTCACACTGTTTGCTCAATTGATTTTTATATGCCTGGCGTGTGTATGTGCTCGGCAGGCAACGGAGCTCATATAGCCTCATATATTGTGACCTGGGCTCCTGTTTCCAAATTATATTTCCACATTTTTCATCTTTATTTCGTTGTTATCGTATCATTGGGTTTTTATCGTTGGGAAAAACTACAAAATTAGGGTGCACCGGTTACTGTGCCGTGAGAGAATTCTCGGAAAATCGGGTTGGGGAGAATTCAAGTTAACGTGACGACTACTTTTGAGAAAGCAGGCTAATTTTAGGAATGTGCAAAAATAGTACAAAGTTAGTCAGGTGAGTTATGCAGAGTAAAGGGGAATTATTAGSTTTGATCAAATTATTAGGTTTGATTCCTATTTAGTTGGAAATCCAGAGGATGATGATTCCGATGAGGAGAACGACGATAATGGCGATAATGATCATCATCTGAATAGACATATGTTGGTAGTTGTGAATTAGGTGCACCCTCTCTTTTTTGAAAGTTAGTTTTGAGGATCAATCCGAAATTCATTAAAAAACAAACTTACACGAGCATTCTGCCACCAGTACTTCTGACGAAGAGTGCGAGATGACTGCTGGAACTGAGAAGCTCCGCTCTGAAGAGCATCGGCACGATGGTCCAGGGAGCTGAGTTGAGCTTCACGCTCCATAACCTTGTTCACATTGTTCTGAAATCACATTTAATTTTCAAAAGATTCTCTGCATCTCCTCTTTCTCACACCTTCTACGTTCCGGAGTGTTTACTTAACTTGAAGATGCCCCGGTTGATAGGATAGGGAAACATGGAGAATTCAAAATAGTACAACACACAAAAGTGTCGTGACCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTAGGAATGTGCAAAAATAG</pcr_primer_p1>
		<pcr_primer_p2>GGATTGATCCTCAAAACTAACTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTTTAGGAATGTGCAAAAATAGTACAAAGTTAGTCAGGTGAGTTATGCAGAGTAAAGGGGAATTATTAGGTTTGATCAAATTATTAGGTTTGATTCCTATTTAGTTGGAAATCCAGAGGATGATGATTCCGATGAGGAGAACGACGATAATGGCGATAATGATCATCATCTGAATAGACATATGTTGGTAGTTGTGAATTAGGTGCACCCTCTCTTTTTTGAAAGTTAGTTTTGAGGATCAATCC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTAGGAATGTGCAAAAATAGTACAAAGTTAGTCAGGTGAGTTATGCAGAGTAAAGGGGAATTATTAGSTTTGATCAAATTATTAGGTTTGATTCCTATTTAGTTGGAAATCCAGAGGATGATGATTCCGATGAGGAGAACGACGATAATGGCGATAATGATCATCATCTGAATAGACATATGTTGGTAGTTGTGAATTAGGTGCACCCTCTCTTTTTTGAAAGTTAGTTTTGAGGATCAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb338</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1519322</contig_pos>
        <strand>+</strand>
        <context>TTCCCTGGAA[C/T]ATTACTGTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTTCCTCCCCAGAAGCCAGAAGGTTTGCATAACACCTTTTCCCTGGAA</left_flank>
        <right_flank>ATTACTGTATTTGTGGCAGAATTCGAGTAGGACTTACTTTTATAATGACT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCGAATCGAGTGAAAAGGTCCTTAAAATGTGTTCCACCTCAAATCGAAGTTCGATCCTGTTACTCTCCAAGATGTTAGAACTTTCTGAATTCCCTCTTATCTTCCTCGATTCTCATTCTTCTCATTCCATCCCCATATTTATTCAATTTTAAATTATTTTCAAAATAATAACAACCATAATAACTGACTATGAGGAGAGAACGTAATAAGACTTCTTTCTCTTGAATCCGCTAGAAATATGGGTATAGACACAACAACAAAGTATGTTCTTAATCTGTTATTGTCACACTTTTAAAGATCATTGAATCCATTTTTTAAATCCTTTCTTTCATTTATTTACAGAAAAATTTAATTTGAAATAAAATTTCTTCTCGAATATTTTTTGATATGTCTTCATTTTTGTGGAGGTCCACTATGTAAGATTTCAATGTACTTTTGGCTCATTCTTCTTTCCTCCCCAGAAGCCAGAAGGTTTGCATAACACCTTTTCCCTGGAACATTACTGTATTTGTGGCAGAATTCGAGTAGGACTTACTTTTATAATGACTTCCCCTCGATTTTCAGTATTATATTCTTTATATAACGAGGTCAATAATTCATGAGCATCGGATGACAAATGAATGAAACCAGCTGAAAAAATTCTGATTCTCAAAACGTTTGAATTCAAAAAAAAAAACGAACGTTTTCCATTACTTTCCATCCGACTGGCAGTGTTCACAGTATCACCGAAAAGACAATATCTTGGCATTGTTAATCCGACGACACCAGCAACACATGATCCAGAATGCATGCCGATTCTAATTTGAACTTTCTCTTGTGGCAAATGTGGAATTTTATAAGATTGCAGGCTCTGAAACAAGCAATTTCATGAAGATTTTCAGAATTTTAACACGAACATCCATAAGTTCTAAACTCATATTAGCAATGTTGTTCACATGTTCCGTACCATTCCTTCGAGGTAATCCAGATACCACGAGATAAGCATCACCAATCGTTTC</canonical>
            <polymorphic>CATCGAATCGAGTGAAAAGGTCCTTAAAATGTGTTCCACCTCAAATCGAAGTTCGATCCTGTTACTCTCCAAGATGTTAGAACTTTCTGAATTCCCTCTTATCTTCCTCGATTCTCATTCTTCTCATTCCATCCCCATATTTATTCAATTTTAAATTATTTTCAAAATAATAACAACCATAATAACTGACTATGAGGAGAGAACGTAATAAGACTTCTTTCTCTTGAATCCGCTAGAAATATGGGTATAGACACAACAACAAAGTATGTTCTTAATCTGTTATTGTCACACTTTTAAAGATCATTGAATCCATTTTTTAAATCCTTTCTTTCATTTATTTACAGAAAAATTTAATTTGAAATAAAATTTCTTCTCGAATATTTTTTGATATGTCTTCATTTTTGTGGAGGTCCACTATGTAAGATTTCAATGTACTTTTGGCTCATTCTTCTTTCCTCCCCAGAAGCCAGAAGGTTTGCATAACACCTTTTCCCTGGAAYATTACTGTATTTGTGGCAGAATTCGAGTAGGACTTACTTTTATAATGACTTCCCCTCGATTTTCAGTATTATATTCTTTATATAACGAGGTCAATAATTCATGAGCATCGGATGACAAATGAATGAAACCAGCTGAAAAAATTCTGATTCTCAAAACGTTTGAATTCAAAAAAAAAAACGAACGTTTTCCATTACTTTCCATCCGACTGGCAGTGTTCACAGTATCACCGAAAAGACAATATCTTGGCATTGTTAATCCGACGACACCAGCAACACATGATCCAGAATGCATGCCGATTCTAATTTGAACTTTCTCTTGTGGCAAATGTGGAATTTTATAAGATTGCAGGCTCTGAAACAAGCAATTTCATGAAGATTTTCAGAATTTTAACACGAACATCCATAAGTTCTAAACTCATATTAGCAATGTTGTTCACATGTTCCGTACCATTCCTTCGAGGTAATCCAGATACCACGAGATAAGCATCACCAATCGTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGTCCACTATGTAAGATTTCAA</pcr_primer_p1>
		<pcr_primer_p2>CGTTTTGAGAATCAGAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGGTCCACTATGTAAGATTTCAATGTACTTTTGGCTCATTCTTCTTTCCTCCCCAGAAGCCAGAAGGTTTGCATAACACCTTTTCCCTGGAACATTACTGTATTTGTGGCAGAATTCGAGTAGGACTTACTTTTATAATGACTTCCCCTCGATTTTCAGTATTATATTCTTTATATAACGAGGTCAATAATTCATGAGCATCGGATGACAAATGAATGAAACCAGCTGAAAAAATTCTGATTCTCAAAACG</canonical_amplicon>
		<polymorphic_amplicon>AGGTCCACTATGTAAGATTTCAATGTACTTTTGGCTCATTCTTCTTTCCTCCCCAGAAGCCAGAAGGTTTGCATAACACCTTTTCCCTGGAAYATTACTGTATTTGTGGCAGAATTCGAGTAGGACTTACTTTTATAATGACTTCCCCTCGATTTTCAGTATTATATTCTTTATATAACGAGGTCAATAATTCATGAGCATCGGATGACAAATGAATGAAACCAGCTGAAAAAATTCTGATTCTCAAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb339</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1520919</contig_pos>
        <strand>+</strand>
        <context>ATCATACTAC[A/G]GTGGATACGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATACGGAGGATACGGATACGGAAGCTACTACGGATACCCATCATACTAC</left_flank>
        <right_flank>GTGGATACGGATACTATGGAAAGAGAGAGGCTGGATTTGGACCAAGTCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCTGAAAAAAAGGGAATTTTTGGGAGTACCTCTGTGTCTTGAATTTGTTTACTTTTGTTTGTTTTGTGGTTTTCGATCTGCTCCTCTTTTCTACTTTTTTAGCTACCGCCGAATGGTTCAAACATTGGCAGAGCACAAATAACTTTTGGGCGGCTGTAGGGTAAGAAAGTGGGCGGAGTTTTGATTGATGAGTAAACAGAGGATGAAGAGTACTATAAATTCAGGTCGATTGGTTTCAGAAGGCATCGAAAGTAAAATCTTCCGAACGACCACACTCAACATGAACGCCAAGCTGTAAGTTTCTCTTTCTAGAAATACTCCTGAAAAATTCAATCCCAAATATTTTCAGTCTCATCCTTGTCTCCCTTCTTGTCATCTGCGCCTTCGTCGCTGAGACCGATGCTCAATACTACTACGGATCCTACGGATACCCATCCTACTATGGAGGATACGGAGGATACGGATACGGAAGCTACTACGGATACCCATCATACTACGGTGGATACGGATACTATGGAAAGAGAGAGGCTGGATTTGGACCAAGTCAACAGAACAATCAATAAATCGAATTGATACTGGACACCTCCTCTGTACATTCAACACCCCGCCCAACTGCCCCCACATCGACTGCACTATCAAGTATTTACGAACGAATCATGATTCCTTAAATGACATAAAATAAAACTTTTGATCGATCAGTTACTGTTTTCTTTGGCATATTCACAGAAAAATTACAAAACAAGGTGACGCATATTAACCCGGTGTGACGAAAACGAGTATATCTCTAGACATAAATATTTTAGAAGCTGAAAATTGATTAAATTTTACGTTTGATTCAGAGCTACTGAAATTTTCAAAGCGATTCATCTAGTCTAGGTATTATTATGGTTGTCCAAAGATGAACCGCGTAATGTTTGATTGTGATTTCCATGAGATGAAGCAATTTTGACAAGCGATAACTCAGCTCAAAGTTGATCAAGTAGTTTTGAAAATTGACC</canonical>
            <polymorphic>TGTCTGAAAAAAAGGGAATTTTTGGGAGTACCTCTGTGTCTTGAATTTGTTTACTTTTGTTTGTTTTGTGGTTTTCGATCTGCTCCTCTTTTCTACTTTTTTAGCTACCGCCGAATGGTTCAAACATTGGCAGAGCACAAATAACTTTTGGGCGGCTGTAGGGTAAGAAAGTGGGCGGAGTTTTGATTGATGAGTAAACAGAGGATGAAGAGTACTATAAATTCAGGTCGATTGGTTTCAGAAGGCATCGAAAGTAAAATCTTCCGAACGACCACACTCAACATGAACGCCAAGCTGTAAGTTTCTCTTTCTAGAAATACTCCTGAAAAATTCAATCCCAAATATTTTCAGTCTCATCCTTGTCTCCCTTCTTGTCATCTGCGCCTTCGTCGCTGAGACCGATGCTCAATACTACTACGGATCCTACGGATACCCATCCTACTATGGAGGATACGGAGGATACGGATACGGAAGCTACTACGGATACCCATCATACTACRGTGGATACGGATACTATGGAAAGAGAGAGGCTGGATTTGGACCAAGTCAACAGAACAATCAATAAATCGAATTGATACTGGACACCTCCTCTGTACATTCAACACCCCGCCCAACTGCCCCCACATCGACTGCACTATCAAGTATTTACGAACGAATCATGATTCCTTAAATGACATAAAATAAAACTTTTGATCGATCAGTTACTGTTTTCTTTGGCATATTCACAGAAAAATTACAAAACAAGGTGACGCATATTAACCCGGTGTGACGAAAACGAGTATATCTCTAGACATAAATATTTTAGAAGCTGAAAATTGATTAAATTTTACGTTTGATTCAGAGCTACTGAAATTTTCAAAGCGATTCATCTAGTCTAGGTATTATTATGGTTGTCCAAAGATGAACCGCGTAATGTTTGATTGTGATTTCCATGAGATGAAGCAATTTTGACAAGCGATAACTCAGCTCAAAGTTGATCAAGTAGTTTTGAAAATTGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCCAAATATTTTCAGTCTCAT</pcr_primer_p1>
		<pcr_primer_p2>TCCAGTATCAATTCGATTTATTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATCCCAAATATTTTCAGTCTCATCCTTGTCTCCCTTCTTGTCATCTGCGCCTTCGTCGCTGAGACCGATGCTCAATACTACTACGGATCCTACGGATACCCATCCTACTATGGAGGATACGGAGGATACGGATACGGAAGCTACTACGGATACCCATCATACTACGGTGGATACGGATACTATGGAAAGAGAGAGGCTGGATTTGGACCAAGTCAACAGAACAATCAATAAATCGAATTGATACTGGA</canonical_amplicon>
		<polymorphic_amplicon>ATCCCAAATATTTTCAGTCTCATCCTTGTCTCCCTTCTTGTCATCTGCGCCTTCGTCGCTGAGACCGATGCTCAATACTACTACGGATCCTACGGATACCCATCCTACTATGGAGGATACGGAGGATACGGATACGGAAGCTACTACGGATACCCATCATACTACRGTGGATACGGATACTATGGAAAGAGAGAGGCTGGATTTGGACCAAGTCAACAGAACAATCAATAAATCGAATTGATACTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb340</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1535791</contig_pos>
        <strand></strand>
        <context>tctggaaagg[G/A]aagcaatcga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>NNAATGAAAATGAAGAGAAACAACAAAAGAGAGTTCAGAATCTGGAAAGG</left_flank>
        <right_flank>AAGCAATCGAAAGTTTAAAAAATTTTCGAAAATTTTCATGTATAGGGGTT</right_flank>
        <qual_score>47</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGAGTGGTTATGAGTATTTGGGTGGAAATTTAAAAAAAGTTTGATCCGCGGACTGGACGTTTCCGGGAACCATGGAGTTTCAGGAAATTGATTTTTGCATAATTTGTACTAATACTGAAGGGTTTGTCGAGATCAGTTCAGGGATGAGGCAAAGATTAGTCAAAAAAAAGCAACATATCTCGGTTCCTGATAATTATATCAAAAAGTTGTCAACTGATAAATTATTTATCATGATATTACAAACCTTTTACCAGTTGATTTTTGATATCTCGCATAGGAGCCAATTTTTGAAAAAAAACGTATTCGGGGGACCATGTCTATCAGTTTTCTCAGGGCGAGTAACGTACATATACGCGTTTAAATATAGGTCTGACCCTTCAGTTATGAGACTTATTTTAATTTTTTTCAAAAGAAGTTACAATTGATGAACCCTATACATGNNNNNNNNNNAATGAAAATGAAGAGAAACAACAAAAGAGAGTTCAGAATCTGGAAAGGGAAGCAATCGAAAGTTTAAAAAATTTTCGAAAATTTTCATGTATAGGGGTTCATGAATTGTAACTTTGTTTTTGAAAAAATTGAAATAAGTCTCGTAACTCAAGGACTCGACCTATATTTGAACGTTACTCGTCCTGAGAAAGCTGATAGACATGATCCCCCGAATACGTTTTTTCAAAAATTGGCATTTATTGATTTCTGTGGAACTCTAAGTTTTCATATTTTCTATTTTCCTGACTTTCCTATTGATAATGGAGCATAGGTGCAATTGAGATAAATGCTTGTCAGTTTATCACCTTTTAAATAAAAAAGTTTGACTGTCTGCCATGAAAATGAACAAATTTATGGTTTCCCGAAGGGTACCGACTCCGAACTCACGAAAAATCATAAATTGCCTCGCCATTTGAATAGACCTTCACGACGGCAGCTATAATTCTGGGGTTGTTCTAGCTAGACTGTGTACCACTATCTAGCATAGGTTTCATCTGAATCCCCGGGTAA</canonical>
            <polymorphic>GGGAGTGGTTATGAGTATTTGGGTGGAAATTTAAAAAAAGTTTGATCCGCGGACTGGACGTTTCCGGGAACCATGGAGTTTCAGGAAATTGATTTTTGCATAATTTGTACTAATACTGAAGGGTTTGTCGAGATCAGTTCAGGGATGAGGCAAAGATTAGTCAAAAAAAAGCAACATATCTCGGTTCCTGATAATTATATCAAAAAGTTGTCAACTGATAAATTATTTATCATGATATTACAAACCTTTTACCAGTTGATTTTTGATATCTCGCATAGGAGCCAATTTTTGAAAAAAAACGTATTCGGGGGACCATGTCTATCAGTTTTCTCAGGGCGAGTAACGTACATATACGCGTTTAAATATAGGTCTGACCCTTCAGTTATGAGACTTATTTTAATTTTTTTCAAAAGAAGTTACAATTGATGAACCCTATACATGNNNNNNNNNNAATGAAAATGAAGAGAAACAACAAAAGAGAGTTCAGAATCTGGAAAGGRAAGCAATCGAAAGTTTAAAAAATTTTCGAAAATTTTCATGTATAGGGGTTCATGAATTGTAACTTTGTTTTTGAAAAAATTGAAATAAGTCTCGTAACTCAAGGACTCGACCTATATTTGAACGTTACTCGTCCTGAGAAAGCTGATAGACATGATCCCCCGAATACGTTTTTTCAAAAATTGGCATTTATTGATTTCTGTGGAACTCTAAGTTTTCATATTTTCTATTTTCCTGACTTTCCTATTGATAATGGAGCATAGGTGCAATTGAGATAAATGCTTGTCAGTTTATCACCTTTTAAATAAAAAAGTTTGACTGTCTGCCATGAAAATGAACAAATTTATGGTTTCCCGAAGGGTACCGACTCCGAACTCACGAAAAATCATAAATTGCCTCGCCATTTGAATAGACCTTCACGACGGCAGCTATAATTCTGGGGTTGTTCTAGCTAGACTGTGTACCACTATCTAGCATAGGTTTCATCTGAATCCCCGGGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAGGCAAAGATTAGTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>CGACACCAATGTTCATAGTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>906</pcr_amplicon_size>
		<canonical_amplicon>ATGAGGCAAAGATTAGTCAAAAAAAAGCAACATATCTCGGTTCCTGATAATTATATCAAAAAGTTGTCAACTGATAAATTATTTATCATGATATTACAAACCTTTTACCAGTTGATTTTTGATATCTCGCATAGGAGCCAATTTTTGAAAAAAAACGTATTCGGGGGACCATGTCTATCAGTTTTCTCAGGGCGAGTAACGTACATATACGCGTTTAAATATAGGTCTGACCCTTCAGTTATGAGACTTATTTTAATTTTTTTCAAAAGAAGTTACAATTGATGAACCCTATACATGNNNNNNNNNNAATGAAAATGAAGAGAAACAACAAAAGAGAGTTCAGAATCTGGAAAGGGAAGCAATCGAAAGTTTAAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATGAGGCAAAGATTAGTCAAAAAAAAGCAACATATCTCGGTTCCTGATAATTATATCAAAAAGTTGTCAACTGATAAATTATTTATCATGATATTACAAACCTTTTACCAGTTGATTTTTGATATCTCGCATAGGAGCCAATTTTTGAAAAAAAACGTATTCGGGGGACCATGTCTATCAGTTTTCTCAGGGCGAGTAACGTACATATACGCGTTTAAATATAGGTCTGACCCTTCAGTTATGAGACTTATTTTAATTTTTTTCAAAAGAAGTTACAATTGATGAACCCTATACATGNNNNNNNNNNAATGAAAATGAAGAGAAACAACAAAAGAGAGTTCAGAATCTGGAAAGGRAAGCAATCGAAAGTTTAAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb341</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1577406</contig_pos>
        <strand>+</strand>
        <context>GCTAATCCCT[C/T]GGWTCTTATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCTTGAGAGAAGAGACCAACTGATTCTGATTATAAATCTGCTAATCCCT</left_flank>
        <right_flank>GGTTCTTATAGTTTATCTTCTTTTACAATTCCCAGATAGCTCCTTTTTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCCTTTAGTTTTTTTCCAGAGTTTTCTAGAAATAGCGTGCAGTTATTTTTTCGAACAAGTTTATGATTTTCAAATACCGAAAAACCAGTAAAAGAAGGGCTCATAACAATTAACTTTGAGCCAATTTATCTCGGTTCCTGTCAAATTTATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCACAAACATTTTATTAGTTTACATATTTTTGACATCTTGCATAGGAATTGAGATAATTCAAACTTGGGGACCCTTCTATTACAGGTTTTACGGTAATGGTCAGGAGAATATGATGTTTGCGGTAAAATCTTCTATGCTTTTCTATTTCTTCATCTTTAATTCACTACACACCAACAAAATAATTTCGAACCCACATCATCATCATAATCCCTTGAAGCCCTTTTGATAACAATAGTAATTAAATTATGAGTGTGTTATACTCTTGAGAGAAGAGACCAACTGATTCTGATTATAAATCTGCTAATCCCTCGGTTCTTATAGTTTATCTTCTTTTACAATTCCCAGATAGCTCCTTTTTCTATAGAGAAATCTCCTTTTTAAGAATTAGTTCTCTTTTATTTTTATTTCCAAAACTATCATCTAGGGACCTCCAAATCATTTCTTGGAGATTTGCACCTTTGGCGATCGCTTCCTCAACTTTTGATTCCTAAAATTCCTGACGACATCACTTGAAAGTGCCTTTTTTGACACTTTCCTCTTGCCCATCAGGAGGATTCTTAATTGAAATTAGATACTTTTTTCTCTTCCCTTGACAAGTTGTAGTGGAAAAAAACGAGTATTTTCGGACTATCCACCCACTTGATTCCTATTTTTTTGTAAACATGCACGTTATGTAGATATTTAGGTAGAATTCTATCTCAATTGTTAACATATTTCAATTTCAAATCACCGTTCTATGATATATTTTAAGATTTATTTCTCAGCCAGGATTATCGAAAATATCAGCTTATGAAGCATTTAAAAATTTAT</canonical>
            <polymorphic>GCTCCTTTAGTTTTTTTCCAGAGTTTTCTAGAAATAGCGTGCAGTTATTTTTTCGAACAAGTTTATGATTTTCAAATACCGAAAAACCAGTAAAAGAAGGGCTCATAACAATTAACTTTGAGCCAATTTATCTCGGTTCCTGTCAAATTTATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCACAAACATTTTATTAGTTTACATATTTTTGACATCTTGCATAGGAATTGAGATAATTCAAACTTGGGGACCCTTCTATTACAGGTTTTACGGTAATGGTCAGGAGAATATGATGTTTGCGGTAAAATCTTCTATGCTTTTCTATTTCTTCATCTTTAATTCACTACACACCAACAAAATAATTTCGAACCCACATCATCATCATAATCCCTTGAAGCCCTTTTGATAACAATAGTAATTAAATTATGAGTGTGTTATACTCTTGAGAGAAGAGACCAACTGATTCTGATTATAAATCTGCTAATCCCTYGGTTCTTATAGTTTATCTTCTTTTACAATTCCCAGATAGCTCCTTTTTCTATAGAGAAATCTCCTTTTTAAGAATTAGTTCTCTTTTATTTTTATTTCCAAAACTATCATCTAGGGACCTCCAAATCATTTCTTGGAGATTTGCACCTTTGGCGATCGCTTCCTCAACTTTTGATTCCTAAAATTCCTGACGACATCACTTGAAAGTGCCTTTTTTGACACTTTCCTCTTGCCCATCAGGAGGATTCTTAATTGAAATTAGATACTTTTTTCTCTTCCCTTGACAAGTTGTAGTGGAAAAAAACGAGTATTTTCGGACTATCCACCCACTTGATTCCTATTTTTTTGTAAACATGCACGTTATGTAGATATTTAGGTAGAATTCTATCTCAATTGTTAACATATTTCAATTTCAAATCACCGTTCTATGATATATTTTAAGATTTATTTCTCAGCCAGGATTATCGAAAATATCAGCTTATGAAGCATTTAAAAATTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTATACTCTTGAGAGAAGAGACCA</pcr_primer_p1>
		<pcr_primer_p2>CAGGAATTTTAGGAATCAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTATACTCTTGAGAGAAGAGACCAACTGATTCTGATTATAAATCTGCTAATCCCTCGGTTCTTATAGTTTATCTTCTTTTACAATTCCCAGATAGCTCCTTTTTCTATAGAGAAATCTCCTTTTTAAGAATTAGTTCTCTTTTATTTTTATTTCCAAAACTATCATCTAGGGACCTCCAAATCATTTCTTGGAGATTTGCACCTTTGGCGATCGCTTCCTCAACTTTTGATTCCTAAAATTCCTG</canonical_amplicon>
		<polymorphic_amplicon>GTTATACTCTTGAGAGAAGAGACCAACTGATTCTGATTATAAATCTGCTAATCCCTYGGTTCTTATAGTTTATCTTCTTTTACAATTCCCAGATAGCTCCTTTTTCTATAGAGAAATCTCCTTTTTAAGAATTAGTTCTCTTTTATTTTTATTTCCAAAACTATCATCTAGGGACCTCCAAATCATTTCTTGGAGATTTGCACCTTTGGCGATCGCTTCCTCAACTTTTGATTCCTAAAATTCCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb342</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1577409</contig_pos>
        <strand>+</strand>
        <context>AATCCCTYGG[A/T]TCTTATAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGAGAGAAGAGACCAACTGATTCTGATTATAAATCTGCTAATCCCTCGG</left_flank>
        <right_flank>TCTTATAGTTTATCTTCTTTTACAATTCCCAGATAGCTCCTTTTTCTATA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTTAGTTTTTTTCCAGAGTTTTCTAGAAATAGCGTGCAGTTATTTTTTCGAACAAGTTTATGATTTTCAAATACCGAAAAACCAGTAAAAGAAGGGCTCATAACAATTAACTTTGAGCCAATTTATCTCGGTTCCTGTCAAATTTATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCACAAACATTTTATTAGTTTACATATTTTTGACATCTTGCATAGGAATTGAGATAATTCAAACTTGGGGACCCTTCTATTACAGGTTTTACGGTAATGGTCAGGAGAATATGATGTTTGCGGTAAAATCTTCTATGCTTTTCTATTTCTTCATCTTTAATTCACTACACACCAACAAAATAATTTCGAACCCACATCATCATCATAATCCCTTGAAGCCCTTTTGATAACAATAGTAATTAAATTATGAGTGTGTTATACTCTTGAGAGAAGAGACCAACTGATTCTGATTATAAATCTGCTAATCCCTCGGTTCTTATAGTTTATCTTCTTTTACAATTCCCAGATAGCTCCTTTTTCTATAGAGAAATCTCCTTTTTAAGAATTAGTTCTCTTTTATTTTTATTTCCAAAACTATCATCTAGGGACCTCCAAATCATTTCTTGGAGATTTGCACCTTTGGCGATCGCTTCCTCAACTTTTGATTCCTAAAATTCCTGACGACATCACTTGAAAGTGCCTTTTTTGACACTTTCCTCTTGCCCATCAGGAGGATTCTTAATTGAAATTAGATACTTTTTTCTCTTCCCTTGACAAGTTGTAGTGGAAAAAAACGAGTATTTTCGGACTATCCACCCACTTGATTCCTATTTTTTTGTAAACATGCACGTTATGTAGATATTTAGGTAGAATTCTATCTCAATTGTTAACATATTTCAATTTCAAATCACCGTTCTATGATATATTTTAAGATTTATTTCTCAGCCAGGATTATCGAAAATATCAGCTTATGAAGCATTTAAAAATTTATCCA</canonical>
            <polymorphic>CCTTTAGTTTTTTTCCAGAGTTTTCTAGAAATAGCGTGCAGTTATTTTTTCGAACAAGTTTATGATTTTCAAATACCGAAAAACCAGTAAAAGAAGGGCTCATAACAATTAACTTTGAGCCAATTTATCTCGGTTCCTGTCAAATTTATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCACAAACATTTTATTAGTTTACATATTTTTGACATCTTGCATAGGAATTGAGATAATTCAAACTTGGGGACCCTTCTATTACAGGTTTTACGGTAATGGTCAGGAGAATATGATGTTTGCGGTAAAATCTTCTATGCTTTTCTATTTCTTCATCTTTAATTCACTACACACCAACAAAATAATTTCGAACCCACATCATCATCATAATCCCTTGAAGCCCTTTTGATAACAATAGTAATTAAATTATGAGTGTGTTATACTCTTGAGAGAAGAGACCAACTGATTCTGATTATAAATCTGCTAATCCCTCGGWTCTTATAGTTTATCTTCTTTTACAATTCCCAGATAGCTCCTTTTTCTATAGAGAAATCTCCTTTTTAAGAATTAGTTCTCTTTTATTTTTATTTCCAAAACTATCATCTAGGGACCTCCAAATCATTTCTTGGAGATTTGCACCTTTGGCGATCGCTTCCTCAACTTTTGATTCCTAAAATTCCTGACGACATCACTTGAAAGTGCCTTTTTTGACACTTTCCTCTTGCCCATCAGGAGGATTCTTAATTGAAATTAGATACTTTTTTCTCTTCCCTTGACAAGTTGTAGTGGAAAAAAACGAGTATTTTCGGACTATCCACCCACTTGATTCCTATTTTTTTGTAAACATGCACGTTATGTAGATATTTAGGTAGAATTCTATCTCAATTGTTAACATATTTCAATTTCAAATCACCGTTCTATGATATATTTTAAGATTTATTTCTCAGCCAGGATTATCGAAAATATCAGCTTATGAAGCATTTAAAAATTTATCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCTTGAGAGAAGAGACCAACT</pcr_primer_p1>
		<pcr_primer_p2>CAGGAATTTTAGGAATCAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ACTCTTGAGAGAAGAGACCAACTGATTCTGATTATAAATCTGCTAATCCCTCGGTTCTTATAGTTTATCTTCTTTTACAATTCCCAGATAGCTCCTTTTTCTATAGAGAAATCTCCTTTTTAAGAATTAGTTCTCTTTTATTTTTATTTCCAAAACTATCATCTAGGGACCTCCAAATCATTTCTTGGAGATTTGCACCTTTGGCGATCGCTTCCTCAACTTTTGATTCCTAAAATTCCTG</canonical_amplicon>
		<polymorphic_amplicon>ACTCTTGAGAGAAGAGACCAACTGATTCTGATTATAAATCTGCTAATCCCTCGGWTCTTATAGTTTATCTTCTTTTACAATTCCCAGATAGCTCCTTTTTCTATAGAGAAATCTCCTTTTTAAGAATTAGTTCTCTTTTATTTTTATTTCCAAAACTATCATCTAGGGACCTCCAAATCATTTCTTGGAGATTTGCACCTTTGGCGATCGCTTCCTCAACTTTTGATTCCTAAAATTCCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb343</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1577514</contig_pos>
        <strand>+</strand>
        <context>CCAAAACTAT[C/T]ATCTAGGGAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCTCCTTTTTAAGAATTAGTTCTCTTTTATTTTTATTTCCAAAACTAT</left_flank>
        <right_flank>ATCTAGGGACCTCCAAATCATTTCTTGGAGATTTGCACCTTTGGCGATCG</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTAACTTTGAGCCAATTTATCTCGGTTCCTGTCAAATTTATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCACAAACATTTTATTAGTTTACATATTTTTGACATCTTGCATAGGAATTGAGATAATTCAAACTTGGGGACCCTTCTATTACAGGTTTTACGGTAATGGTCAGGAGAATATGATGTTTGCGGTAAAATCTTCTATGCTTTTCTATTTCTTCATCTTTAATTCACTACACACCAACAAAATAATTTCGAACCCACATCATCATCATAATCCCTTGAAGCCCTTTTGATAACAATAGTAATTAAATTATGAGTGTGTTATACTCTTGAGAGAAGAGACCAACTGATTCTGATTATAAATCTGCTAATCCCTCGGTTCTTATAGTTTATCTTCTTTTACAATTCCCAGATAGCTCCTTTTTCTATAGAGAAATCTCCTTTTTAAGAATTAGTTCTCTTTTATTTTTATTTCCAAAACTATCATCTAGGGACCTCCAAATCATTTCTTGGAGATTTGCACCTTTGGCGATCGCTTCCTCAACTTTTGATTCCTAAAATTCCTGACGACATCACTTGAAAGTGCCTTTTTTGACACTTTCCTCTTGCCCATCAGGAGGATTCTTAATTGAAATTAGATACTTTTTTCTCTTCCCTTGACAAGTTGTAGTGGAAAAAAACGAGTATTTTCGGACTATCCACCCACTTGATTCCTATTTTTTTGTAAACATGCACGTTATGTAGATATTTAGGTAGAATTCTATCTCAATTGTTAACATATTTCAATTTCAAATCACCGTTCTATGATATATTTTAAGATTTATTTCTCAGCCAGGATTATCGAAAATATCAGCTTATGAAGCATTTAAAAATTTATCCATTGCTTCTAGTAAATTCAAATTGAATATCCCGTTTTCTTTCTATCCTTCATTTTGATCAAATGCACAATCTCGGATATTCGGTACTCCTCGTTAATCACTTAACT</canonical>
            <polymorphic>CAATTAACTTTGAGCCAATTTATCTCGGTTCCTGTCAAATTTATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCACAAACATTTTATTAGTTTACATATTTTTGACATCTTGCATAGGAATTGAGATAATTCAAACTTGGGGACCCTTCTATTACAGGTTTTACGGTAATGGTCAGGAGAATATGATGTTTGCGGTAAAATCTTCTATGCTTTTCTATTTCTTCATCTTTAATTCACTACACACCAACAAAATAATTTCGAACCCACATCATCATCATAATCCCTTGAAGCCCTTTTGATAACAATAGTAATTAAATTATGAGTGTGTTATACTCTTGAGAGAAGAGACCAACTGATTCTGATTATAAATCTGCTAATCCCTCGGTTCTTATAGTTTATCTTCTTTTACAATTCCCAGATAGCTCCTTTTTCTATAGAGAAATCTCCTTTTTAAGAATTAGTTCTCTTTTATTTTTATTTCCAAAACTATYATCTAGGGACCTCCAAATCATTTCTTGGAGATTTGCACCTTTGGCGATCGCTTCCTCAACTTTTGATTCCTAAAATTCCTGACGACATCACTTGAAAGTGCCTTTTTTGACACTTTCCTCTTGCCCATCAGGAGGATTCTTAATTGAAATTAGATACTTTTTTCTCTTCCCTTGACAAGTTGTAGTGGAAAAAAACGAGTATTTTCGGACTATCCACCCACTTGATTCCTATTTTTTTGTAAACATGCACGTTATGTAGATATTTAGGTAGAATTCTATCTCAATTGTTAACATATTTCAATTTCAAATCACCGTTCTATGATATATTTTAAGATTTATTTCTCAGCCAGGATTATCGAAAATATCAGCTTATGAAGCATTTAAAAATTTATCCATTGCTTCTAGTAAATTCAAATTGAATATCCCGTTTTCTTTCTATCCTTCATTTTGATCAAATGCACAATCTCGGATATTCGGTACTCCTCGTTAATCACTTAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCTTGAGAGAAGAGACCAACT</pcr_primer_p1>
		<pcr_primer_p2>CAGGAATTTTAGGAATCAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ACTCTTGAGAGAAGAGACCAACTGATTCTGATTATAAATCTGCTAATCCCTCGGTTCTTATAGTTTATCTTCTTTTACAATTCCCAGATAGCTCCTTTTTCTATAGAGAAATCTCCTTTTTAAGAATTAGTTCTCTTTTATTTTTATTTCCAAAACTATCATCTAGGGACCTCCAAATCATTTCTTGGAGATTTGCACCTTTGGCGATCGCTTCCTCAACTTTTGATTCCTAAAATTCCTG</canonical_amplicon>
		<polymorphic_amplicon>ACTCTTGAGAGAAGAGACCAACTGATTCTGATTATAAATCTGCTAATCCCTCGGTTCTTATAGTTTATCTTCTTTTACAATTCCCAGATAGCTCCTTTTTCTATAGAGAAATCTCCTTTTTAAGAATTAGTTCTCTTTTATTTTTATTTCCAAAACTATYATCTAGGGACCTCCAAATCATTTCTTGGAGATTTGCACCTTTGGCGATCGCTTCCTCAACTTTTGATTCCTAAAATTCCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb344</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1577604</contig_pos>
        <strand>+</strand>
        <context>TGACGACATC[A/T]YTTGAAAGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGGCGATCGCTTCCTCAACTTTTGATTCCTAAAATTCCTGACGACATC</left_flank>
        <right_flank>CTTGAAAGTGCCTTTTTTGACACTTTCCTCTTGCCCATCAGGAGGATTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTATTAGTTTACATATTTTTGACATCTTGCATAGGAATTGAGATAATTCAAACTTGGGGACCCTTCTATTACAGGTTTTACGGTAATGGTCAGGAGAATATGATGTTTGCGGTAAAATCTTCTATGCTTTTCTATTTCTTCATCTTTAATTCACTACACACCAACAAAATAATTTCGAACCCACATCATCATCATAATCCCTTGAAGCCCTTTTGATAACAATAGTAATTAAATTATGAGTGTGTTATACTCTTGAGAGAAGAGACCAACTGATTCTGATTATAAATCTGCTAATCCCTCGGTTCTTATAGTTTATCTTCTTTTACAATTCCCAGATAGCTCCTTTTTCTATAGAGAAATCTCCTTTTTAAGAATTAGTTCTCTTTTATTTTTATTTCCAAAACTATCATCTAGGGACCTCCAAATCATTTCTTGGAGATTTGCACCTTTGGCGATCGCTTCCTCAACTTTTGATTCCTAAAATTCCTGACGACATCACTTGAAAGTGCCTTTTTTGACACTTTCCTCTTGCCCATCAGGAGGATTCTTAATTGAAATTAGATACTTTTTTCTCTTCCCTTGACAAGTTGTAGTGGAAAAAAACGAGTATTTTCGGACTATCCACCCACTTGATTCCTATTTTTTTGTAAACATGCACGTTATGTAGATATTTAGGTAGAATTCTATCTCAATTGTTAACATATTTCAATTTCAAATCACCGTTCTATGATATATTTTAAGATTTATTTCTCAGCCAGGATTATCGAAAATATCAGCTTATGAAGCATTTAAAAATTTATCCATTGCTTCTAGTAAATTCAAATTGAATATCCCGTTTTCTTTCTATCCTTCATTTTGATCAAATGCACAATCTCGGATATTCGGTACTCCTCGTTAATCACTTAACTACAGTAAAATCCGTAATAGAAAGGCCCCACGCACTGTCAAGTTTGAGCACAATTATCTCGGCTCGTATGTTAGATATCGAAAATGTGTCA</canonical>
            <polymorphic>TTTTATTAGTTTACATATTTTTGACATCTTGCATAGGAATTGAGATAATTCAAACTTGGGGACCCTTCTATTACAGGTTTTACGGTAATGGTCAGGAGAATATGATGTTTGCGGTAAAATCTTCTATGCTTTTCTATTTCTTCATCTTTAATTCACTACACACCAACAAAATAATTTCGAACCCACATCATCATCATAATCCCTTGAAGCCCTTTTGATAACAATAGTAATTAAATTATGAGTGTGTTATACTCTTGAGAGAAGAGACCAACTGATTCTGATTATAAATCTGCTAATCCCTCGGTTCTTATAGTTTATCTTCTTTTACAATTCCCAGATAGCTCCTTTTTCTATAGAGAAATCTCCTTTTTAAGAATTAGTTCTCTTTTATTTTTATTTCCAAAACTATCATCTAGGGACCTCCAAATCATTTCTTGGAGATTTGCACCTTTGGCGATCGCTTCCTCAACTTTTGATTCCTAAAATTCCTGACGACATCWCTTGAAAGTGCCTTTTTTGACACTTTCCTCTTGCCCATCAGGAGGATTCTTAATTGAAATTAGATACTTTTTTCTCTTCCCTTGACAAGTTGTAGTGGAAAAAAACGAGTATTTTCGGACTATCCACCCACTTGATTCCTATTTTTTTGTAAACATGCACGTTATGTAGATATTTAGGTAGAATTCTATCTCAATTGTTAACATATTTCAATTTCAAATCACCGTTCTATGATATATTTTAAGATTTATTTCTCAGCCAGGATTATCGAAAATATCAGCTTATGAAGCATTTAAAAATTTATCCATTGCTTCTAGTAAATTCAAATTGAATATCCCGTTTTCTTTCTATCCTTCATTTTGATCAAATGCACAATCTCGGATATTCGGTACTCCTCGTTAATCACTTAACTACAGTAAAATCCGTAATAGAAAGGCCCCACGCACTGTCAAGTTTGAGCACAATTATCTCGGCTCGTATGTTAGATATCGAAAATGTGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>201 155 149 75 62 59 53 38 36 33 29 29 23 16 12 10 5 4 4 3 2 2</canonical_bands>
                <polymorphic_bands>201 155 149 75 63 62 59 38 36 33 29 29 23 16 12 5 4 4 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAATCATTTCTTGGAGATT</pcr_primer_p1>
		<pcr_primer_p2>CTACATAACGTGCATGTTTACAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCAAATCATTTCTTGGAGATTTGCACCTTTGGCGATCGCTTCCTCAACTTTTGATTCCTAAAATTCCTGACGACATCACTTGAAAGTGCCTTTTTTGACACTTTCCTCTTGCCCATCAGGAGGATTCTTAATTGAAATTAGATACTTTTTTCTCTTCCCTTGACAAGTTGTAGTGGAAAAAAACGAGTATTTTCGGACTATCCACCCACTTGATTCCTATTTTTTTGTAAACATGCACGTTATGTAG</canonical_amplicon>
		<polymorphic_amplicon>CCAAATCATTTCTTGGAGATTTGCACCTTTGGCGATCGCTTCCTCAACTTTTGATTCCTAAAATTCCTGACGACATCWCTTGAAAGTGCCTTTTTTGACACTTTCCTCTTGCCCATCAGGAGGATTCTTAATTGAAATTAGATACTTTTTTCTCTTCCCTTGACAAGTTGTAGTGGAAAAAAACGAGTATTTTCGGACTATCCACCCACTTGATTCCTATTTTTTTGTAAACATGCACGTTATGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb345</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1577605</contig_pos>
        <strand>+</strand>
        <context>GACGACATCW[C/T]TTGAAAGTGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGCGATCGCTTCCTCAACTTTTGATTCCTAAAATTCCTGACGACATCA</left_flank>
        <right_flank>TTGAAAGTGCCTTTTTTGACACTTTCCTCTTGCCCATCAGGAGGATTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTATTAGTTTACATATTTTTGACATCTTGCATAGGAATTGAGATAATTCAAACTTGGGGACCCTTCTATTACAGGTTTTACGGTAATGGTCAGGAGAATATGATGTTTGCGGTAAAATCTTCTATGCTTTTCTATTTCTTCATCTTTAATTCACTACACACCAACAAAATAATTTCGAACCCACATCATCATCATAATCCCTTGAAGCCCTTTTGATAACAATAGTAATTAAATTATGAGTGTGTTATACTCTTGAGAGAAGAGACCAACTGATTCTGATTATAAATCTGCTAATCCCTCGGTTCTTATAGTTTATCTTCTTTTACAATTCCCAGATAGCTCCTTTTTCTATAGAGAAATCTCCTTTTTAAGAATTAGTTCTCTTTTATTTTTATTTCCAAAACTATCATCTAGGGACCTCCAAATCATTTCTTGGAGATTTGCACCTTTGGCGATCGCTTCCTCAACTTTTGATTCCTAAAATTCCTGACGACATCACTTGAAAGTGCCTTTTTTGACACTTTCCTCTTGCCCATCAGGAGGATTCTTAATTGAAATTAGATACTTTTTTCTCTTCCCTTGACAAGTTGTAGTGGAAAAAAACGAGTATTTTCGGACTATCCACCCACTTGATTCCTATTTTTTTGTAAACATGCACGTTATGTAGATATTTAGGTAGAATTCTATCTCAATTGTTAACATATTTCAATTTCAAATCACCGTTCTATGATATATTTTAAGATTTATTTCTCAGCCAGGATTATCGAAAATATCAGCTTATGAAGCATTTAAAAATTTATCCATTGCTTCTAGTAAATTCAAATTGAATATCCCGTTTTCTTTCTATCCTTCATTTTGATCAAATGCACAATCTCGGATATTCGGTACTCCTCGTTAATCACTTAACTACAGTAAAATCCGTAATAGAAAGGCCCCACGCACTGTCAAGTTTGAGCACAATTATCTCGGCTCGTATGTTAGATATCGAAAATGTGTCAA</canonical>
            <polymorphic>TTTATTAGTTTACATATTTTTGACATCTTGCATAGGAATTGAGATAATTCAAACTTGGGGACCCTTCTATTACAGGTTTTACGGTAATGGTCAGGAGAATATGATGTTTGCGGTAAAATCTTCTATGCTTTTCTATTTCTTCATCTTTAATTCACTACACACCAACAAAATAATTTCGAACCCACATCATCATCATAATCCCTTGAAGCCCTTTTGATAACAATAGTAATTAAATTATGAGTGTGTTATACTCTTGAGAGAAGAGACCAACTGATTCTGATTATAAATCTGCTAATCCCTCGGTTCTTATAGTTTATCTTCTTTTACAATTCCCAGATAGCTCCTTTTTCTATAGAGAAATCTCCTTTTTAAGAATTAGTTCTCTTTTATTTTTATTTCCAAAACTATCATCTAGGGACCTCCAAATCATTTCTTGGAGATTTGCACCTTTGGCGATCGCTTCCTCAACTTTTGATTCCTAAAATTCCTGACGACATCAYTTGAAAGTGCCTTTTTTGACACTTTCCTCTTGCCCATCAGGAGGATTCTTAATTGAAATTAGATACTTTTTTCTCTTCCCTTGACAAGTTGTAGTGGAAAAAAACGAGTATTTTCGGACTATCCACCCACTTGATTCCTATTTTTTTGTAAACATGCACGTTATGTAGATATTTAGGTAGAATTCTATCTCAATTGTTAACATATTTCAATTTCAAATCACCGTTCTATGATATATTTTAAGATTTATTTCTCAGCCAGGATTATCGAAAATATCAGCTTATGAAGCATTTAAAAATTTATCCATTGCTTCTAGTAAATTCAAATTGAATATCCCGTTTTCTTTCTATCCTTCATTTTGATCAAATGCACAATCTCGGATATTCGGTACTCCTCGTTAATCACTTAACTACAGTAAAATCCGTAATAGAAAGGCCCCACGCACTGTCAAGTTTGAGCACAATTATCTCGGCTCGTATGTTAGATATCGAAAATGTGTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>201 154 149 75 62 59 53 38 36 33 29 29 23 16 12 10 5 4 4 4 2 2</canonical_bands>
                <polymorphic_bands>201 154 149 75 63 62 59 38 36 33 29 29 23 16 12 5 4 4 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAATCATTTCTTGGAGATT</pcr_primer_p1>
		<pcr_primer_p2>CTACATAACGTGCATGTTTACAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCAAATCATTTCTTGGAGATTTGCACCTTTGGCGATCGCTTCCTCAACTTTTGATTCCTAAAATTCCTGACGACATCACTTGAAAGTGCCTTTTTTGACACTTTCCTCTTGCCCATCAGGAGGATTCTTAATTGAAATTAGATACTTTTTTCTCTTCCCTTGACAAGTTGTAGTGGAAAAAAACGAGTATTTTCGGACTATCCACCCACTTGATTCCTATTTTTTTGTAAACATGCACGTTATGTAG</canonical_amplicon>
		<polymorphic_amplicon>CCAAATCATTTCTTGGAGATTTGCACCTTTGGCGATCGCTTCCTCAACTTTTGATTCCTAAAATTCCTGACGACATCAYTTGAAAGTGCCTTTTTTGACACTTTCCTCTTGCCCATCAGGAGGATTCTTAATTGAAATTAGATACTTTTTTCTCTTCCCTTGACAAGTTGTAGTGGAAAAAAACGAGTATTTTCGGACTATCCACCCACTTGATTCCTATTTTTTTGTAAACATGCACGTTATGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb346</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1579138</contig_pos>
        <strand>+</strand>
        <context>TTCTCGAATT[C/T]GAATTTTCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATTTTTCTCTCCAACCCCAAAATGAATTCGACTCCTTTTTCTCGAATT</left_flank>
        <right_flank>GAATTTTCCGAGTACAAAATTTGATAGCTCTCCCACTAGCTAACCCATTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCGGAATTCTCGTTTTATTTTTTGTACAAGCCGTTGATAATCACAATAAGTTTTTCCGCATCTATCTCAGATCATTGACCAATCGTATAACCTGTACTTTCCAAACACAGGATCTCTCGTTCATCCATCTTTTTTTTCGCTTCTCTCCGTCATCATGAAGGCCTCCAGCTGCAAATAGTCGCATTTCAATTACTCTCCACTCTCATTGCTTTTCCAGAACCTCATGACTAACTGTGTCCGAAATGTGCTACTTTTATATTTGTCTAGTACAATTTTCAATTTGCGTCAATCAAAACTTTGGCCTGGAACATATCGTAAAATCCAGTATTCGCCATCAGGGCACCTCTTCTTGTTCTTATTGACAAGAGCGCGAGCTGGGCGGAGCCTCCATCCCTTCCATTCCTCCCTTCCCATTGCCCCACTTCTCTATTTTCCATTTCGAATTTCAATTTTTCTCTCCAACCCCAAAATGAATTCGACTCCTTTTTCTCGAATTTGAATTTTCCGAGTACAAAATTTGATAGCTCTCCCACTAGCTAACCCATTTGTTCTATTTTCAGCTTGAGATGAACCTTACCGTACTGGCTGAACTGATTGAGCTCCGTGCCAAGGCTGAAGCGGAATTATTATGTGCTCATGTGAGTTTAATTTTCAATAGGCAGGGAATGACAATTTGTTTGTTACAGTATGAAACTTATACACCTATTCGGTTTATTCTAATCACAATCGCAACGGTCATTGCGTGTCTTGGAACTATTGGAAATGCATTGTTGCTCATTGTGTTTTCATCTAACAATAAGCAGGTGAGAATATAAGTCTGGGGGAAAAATAAGTGTTCATTTTCATCTAGTACCTTCCTAGTCTTTTCCTAGTTATCCTGGTCTATTCAATCATCAAGAAATTTTGAGGAACTTTCAAACAACTCGTTTCCTAGAAGAGACAACATCCGACTTTCATTTTAAAAGATCGGCTATGTTTCTTAGAACTTTAAAACTCT</canonical>
            <polymorphic>TTTTCGGAATTCTCGTTTTATTTTTTGTACAAGCCGTTGATAATCACAATAAGTTTTTCCGCATCTATCTCAGATCATTGACCAATCGTATAACCTGTACTTTCCAAACACAGGATCTCTCGTTCATCCATCTTTTTTTTCGCTTCTCTCCGTCATCATGAAGGCCTCCAGCTGCAAATAGTCGCATTTCAATTACTCTCCACTCTCATTGCTTTTCCAGAACCTCATGACTAACTGTGTCCGAAATGTGCTACTTTTATATTTGTCTAGTACAATTTTCAATTTGCGTCAATCAAAACTTTGGCCTGGAACATATCGTAAAATCCAGTATTCGCCATCAGGGCACCTCTTCTTGTTCTTATTGACAAGAGCGCGAGCTGGGCGGAGCCTCCATCCCTTCCATTCCTCCCTTCCCATTGCCCCACTTCTCTATTTTCCATTTCGAATTTCAATTTTTCTCTCCAACCCCAAAATGAATTCGACTCCTTTTTCTCGAATTYGAATTTTCCGAGTACAAAATTTGATAGCTCTCCCACTAGCTAACCCATTTGTTCTATTTTCAGCTTGAGATGAACCTTACCGTACTGGCTGAACTGATTGAGCTCCGTGCCAAGGCTGAAGCGGAATTATTATGTGCTCATGTGAGTTTAATTTTCAATAGGCAGGGAATGACAATTTGTTTGTTACAGTATGAAACTTATACACCTATTCGGTTTATTCTAATCACAATCGCAACGGTCATTGCGTGTCTTGGAACTATTGGAAATGCATTGTTGCTCATTGTGTTTTCATCTAACAATAAGCAGGTGAGAATATAAGTCTGGGGGAAAAATAAGTGTTCATTTTCATCTAGTACCTTCCTAGTCTTTTCCTAGTTATCCTGGTCTATTCAATCATCAAGAAATTTTGAGGAACTTTCAAACAACTCGTTTCCTAGAAGAGACAACATCCGACTTTCATTTTAAAAGATCGGCTATGTTTCTTAGAACTTTAAAACTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>437 385 98 31 20 16 7 6</canonical_bands>
                <polymorphic_bands>437 385 98 31 26 16 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAACATATCGTAAAATCCAGTA</pcr_primer_p1>
		<pcr_primer_p2>TAGAACAAATGGGTTAGCTAGTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGAACATATCGTAAAATCCAGTATTCGCCATCAGGGCACCTCTTCTTGTTCTTATTGACAAGAGCGCGAGCTGGGCGGAGCCTCCATCCCTTCCATTCCTCCCTTCCCATTGCCCCACTTCTCTATTTTCCATTTCGAATTTCAATTTTTCTCTCCAACCCCAAAATGAATTCGACTCCTTTTTCTCGAATTTGAATTTTCCGAGTACAAAATTTGATAGCTCTCCCACTAGCTAACCCATTTGTTCTA</canonical_amplicon>
		<polymorphic_amplicon>GGAACATATCGTAAAATCCAGTATTCGCCATCAGGGCACCTCTTCTTGTTCTTATTGACAAGAGCGCGAGCTGGGCGGAGCCTCCATCCCTTCCATTCCTCCCTTCCCATTGCCCCACTTCTCTATTTTCCATTTCGAATTTCAATTTTTCTCTCCAACCCCAAAATGAATTCGACTCCTTTTTCTCGAATTYGAATTTTCCGAGTACAAAATTTGATAGCTCTCCCACTAGCTAACCCATTTGTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb347</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1579028</contig_pos>
        <strand>+</strand>
        <context>GGGCGGAGCC[A/T]CCATCCCTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGGGCACCTCTTCTTGTTCTTATTGACAAGAGCGCGAGCTGGGCGGAGCC</left_flank>
        <right_flank>CCATCCCTTCCATTCCTCCCTTCCCATTGCCCCACTTCTCTATTTTCCAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGTTTCCTCTACTCTTGTTCAACTTGCTCATCAGTCTCATAGGTCAATAAAACCTATCTGGGGCAGCACATGTTATTTCATTTGAGACGCTCTCATCTCCCTGTTTTTTTTTCGGAATTCTCGTTTTATTTTTTGTACAAGCCGTTGATAATCACAATAAGTTTTTCCGCATCTATCTCAGATCATTGACCAATCGTATAACCTGTACTTTCCAAACACAGGATCTCTCGTTCATCCATCTTTTTTTTCGCTTCTCTCCGTCATCATGAAGGCCTCCAGCTGCAAATAGTCGCATTTCAATTACTCTCCACTCTCATTGCTTTTCCAGAACCTCATGACTAACTGTGTCCGAAATGTGCTACTTTTATATTTGTCTAGTACAATTTTCAATTTGCGTCAATCAAAACTTTGGCCTGGAACATATCGTAAAATCCAGTATTCGCCATCAGGGCACCTCTTCTTGTTCTTATTGACAAGAGCGCGAGCTGGGCGGAGCCTCCATCCCTTCCATTCCTCCCTTCCCATTGCCCCACTTCTCTATTTTCCATTTCGAATTTCAATTTTTCTCTCCAACCCCAAAATGAATTCGACTCCTTTTTCTCGAATTTGAATTTTCCGAGTACAAAATTTGATAGCTCTCCCACTAGCTAACCCATTTGTTCTATTTTCAGCTTGAGATGAACCTTACCGTACTGGCTGAACTGATTGAGCTCCGTGCCAAGGCTGAAGCGGAATTATTATGTGCTCATGTGAGTTTAATTTTCAATAGGCAGGGAATGACAATTTGTTTGTTACAGTATGAAACTTATACACCTATTCGGTTTATTCTAATCACAATCGCAACGGTCATTGCGTGTCTTGGAACTATTGGAAATGCATTGTTGCTCATTGTGTTTTCATCTAACAATAAGCAGGTGAGAATATAAGTCTGGGGGAAAAATAAGTGTTCATTTTCATCTAGTACCTTCCTAGTCTTTTCCTAGTTATCCTGGTCTATT</canonical>
            <polymorphic>GTTGTTTCCTCTACTCTTGTTCAACTTGCTCATCAGTCTCATAGGTCAATAAAACCTATCTGGGGCAGCACATGTTATTTCATTTGAGACGCTCTCATCTCCCTGTTTTTTTTTCGGAATTCTCGTTTTATTTTTTGTACAAGCCGTTGATAATCACAATAAGTTTTTCCGCATCTATCTCAGATCATTGACCAATCGTATAACCTGTACTTTCCAAACACAGGATCTCTCGTTCATCCATCTTTTTTTTCGCTTCTCTCCGTCATCATGAAGGCCTCCAGCTGCAAATAGTCGCATTTCAATTACTCTCCACTCTCATTGCTTTTCCAGAACCTCATGACTAACTGTGTCCGAAATGTGCTACTTTTATATTTGTCTAGTACAATTTTCAATTTGCGTCAATCAAAACTTTGGCCTGGAACATATCGTAAAATCCAGTATTCGCCATCAGGGCACCTCTTCTTGTTCTTATTGACAAGAGCGCGAGCTGGGCGGAGCCWCCATCCCTTCCATTCCTCCCTTCCCATTGCCCCACTTCTCTATTTTCCATTTCGAATTTCAATTTTTCTCTCCAACCCCAAAATGAATTCGACTCCTTTTTCTCGAATTTGAATTTTCCGAGTACAAAATTTGATAGCTCTCCCACTAGCTAACCCATTTGTTCTATTTTCAGCTTGAGATGAACCTTACCGTACTGGCTGAACTGATTGAGCTCCGTGCCAAGGCTGAAGCGGAATTATTATGTGCTCATGTGAGTTTAATTTTCAATAGGCAGGGAATGACAATTTGTTTGTTACAGTATGAAACTTATACACCTATTCGGTTTATTCTAATCACAATCGCAACGGTCATTGCGTGTCTTGGAACTATTGGAAATGCATTGTTGCTCATTGTGTTTTCATCTAACAATAAGCAGGTGAGAATATAAGTCTGGGGGAAAAATAAGTGTTCATTTTCATCTAGTACCTTCCTAGTCTTTTCCTAGTTATCCTGGTCTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAACATATCGTAAAATCCAGTA</pcr_primer_p1>
		<pcr_primer_p2>TAGAACAAATGGGTTAGCTAGTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGAACATATCGTAAAATCCAGTATTCGCCATCAGGGCACCTCTTCTTGTTCTTATTGACAAGAGCGCGAGCTGGGCGGAGCCTCCATCCCTTCCATTCCTCCCTTCCCATTGCCCCACTTCTCTATTTTCCATTTCGAATTTCAATTTTTCTCTCCAACCCCAAAATGAATTCGACTCCTTTTTCTCGAATTTGAATTTTCCGAGTACAAAATTTGATAGCTCTCCCACTAGCTAACCCATTTGTTCTA</canonical_amplicon>
		<polymorphic_amplicon>GGAACATATCGTAAAATCCAGTATTCGCCATCAGGGCACCTCTTCTTGTTCTTATTGACAAGAGCGCGAGCTGGGCGGAGCCWCCATCCCTTCCATTCCTCCCTTCCCATTGCCCCACTTCTCTATTTTCCATTTCGAATTTCAATTTTTCTCTCCAACCCCAAAATGAATTCGACTCCTTTTTCTCGAATTTGAATTTTCCGAGTACAAAATTTGATAGCTCTCCCACTAGCTAACCCATTTGTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb348</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1578887</contig_pos>
        <strand>+</strand>
        <context>GTCCGAAATG[G/T]GCTACTTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCCACTCTCATTGCTTTTCCAGAACCTCATGACTAACTGTGTCCGAAATG</left_flank>
        <right_flank>GCTACTTTTATATTTGTCTAGTACAATTTTCAATTTGCGTCAATCAAAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCAAAACCACCAATGCCGGATCCTCTGGAACCGCAACTCAAGAAGCTCCAACTGACACCGTCATGGAGGATCTCTCGTCCGGACCACTGCTTCTACTTCCGAAAGGTACAACTCAGTTTACGGTTGATAGTTTCAATAAAGTTGTTTCCTCTACTCTTGTTCAACTTGCTCATCAGTCTCATAGGTCAATAAAACCTATCTGGGGCAGCACATGTTATTTCATTTGAGACGCTCTCATCTCCCTGTTTTTTTTTCGGAATTCTCGTTTTATTTTTTGTACAAGCCGTTGATAATCACAATAAGTTTTTCCGCATCTATCTCAGATCATTGACCAATCGTATAACCTGTACTTTCCAAACACAGGATCTCTCGTTCATCCATCTTTTTTTTCGCTTCTCTCCGTCATCATGAAGGCCTCCAGCTGCAAATAGTCGCATTTCAATTACTCTCCACTCTCATTGCTTTTCCAGAACCTCATGACTAACTGTGTCCGAAATGTGCTACTTTTATATTTGTCTAGTACAATTTTCAATTTGCGTCAATCAAAACTTTGGCCTGGAACATATCGTAAAATCCAGTATTCGCCATCAGGGCACCTCTTCTTGTTCTTATTGACAAGAGCGCGAGCTGGGCGGAGCCTCCATCCCTTCCATTCCTCCCTTCCCATTGCCCCACTTCTCTATTTTCCATTTCGAATTTCAATTTTTCTCTCCAACCCCAAAATGAATTCGACTCCTTTTTCTCGAATTTGAATTTTCCGAGTACAAAATTTGATAGCTCTCCCACTAGCTAACCCATTTGTTCTATTTTCAGCTTGAGATGAACCTTACCGTACTGGCTGAACTGATTGAGCTCCGTGCCAAGGCTGAAGCGGAATTATTATGTGCTCATGTGAGTTTAATTTTCAATAGGCAGGGAATGACAATTTGTTTGTTACAGTATGAAACTTATACACCTATTCGGTTTATTCTAATCACAATCGCAACGGTCATTGCGTGT</canonical>
            <polymorphic>GCCAAAACCACCAATGCCGGATCCTCTGGAACCGCAACTCAAGAAGCTCCAACTGACACCGTCATGGAGGATCTCTCGTCCGGACCACTGCTTCTACTTCCGAAAGGTACAACTCAGTTTACGGTTGATAGTTTCAATAAAGTTGTTTCCTCTACTCTTGTTCAACTTGCTCATCAGTCTCATAGGTCAATAAAACCTATCTGGGGCAGCACATGTTATTTCATTTGAGACGCTCTCATCTCCCTGTTTTTTTTTCGGAATTCTCGTTTTATTTTTTGTACAAGCCGTTGATAATCACAATAAGTTTTTCCGCATCTATCTCAGATCATTGACCAATCGTATAACCTGTACTTTCCAAACACAGGATCTCTCGTTCATCCATCTTTTTTTTCGCTTCTCTCCGTCATCATGAAGGCCTCCAGCTGCAAATAGTCGCATTTCAATTACTCTCCACTCTCATTGCTTTTCCAGAACCTCATGACTAACTGTGTCCGAAATGKGCTACTTTTATATTTGTCTAGTACAATTTTCAATTTGCGTCAATCAAAACTTTGGCCTGGAACATATCGTAAAATCCAGTATTCGCCATCAGGGCACCTCTTCTTGTTCTTATTGACAAGAGCGCGAGCTGGGCGGAGCCTCCATCCCTTCCATTCCTCCCTTCCCATTGCCCCACTTCTCTATTTTCCATTTCGAATTTCAATTTTTCTCTCCAACCCCAAAATGAATTCGACTCCTTTTTCTCGAATTTGAATTTTCCGAGTACAAAATTTGATAGCTCTCCCACTAGCTAACCCATTTGTTCTATTTTCAGCTTGAGATGAACCTTACCGTACTGGCTGAACTGATTGAGCTCCGTGCCAAGGCTGAAGCGGAATTATTATGTGCTCATGTGAGTTTAATTTTCAATAGGCAGGGAATGACAATTTGTTTGTTACAGTATGAAACTTATACACCTATTCGGTTTATTCTAATCACAATCGCAACGGTCATTGCGTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>124 111 95 92 86 79 74 64 60 48 37 29 27 22 22 11 10 8 1</canonical_bands>
                <polymorphic_bands>124 111 106 92 86 79 74 64 60 48 37 29 27 22 22 10 8 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAATCGTATAACCTGTACTTTC</pcr_primer_p1>
		<pcr_primer_p2>ACTGGATTTTACGATATGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCAATCGTATAACCTGTACTTTCCAAACACAGGATCTCTCGTTCATCCATCTTTTTTTTCGCTTCTCTCCGTCATCATGAAGGCCTCCAGCTGCAAATAGTCGCATTTCAATTACTCTCCACTCTCATTGCTTTTCCAGAACCTCATGACTAACTGTGTCCGAAATGTGCTACTTTTATATTTGTCTAGTACAATTTTCAATTTGCGTCAATCAAAACTTTGGCCTGGAACATATCGTAAAATCCAGT</canonical_amplicon>
		<polymorphic_amplicon>CCAATCGTATAACCTGTACTTTCCAAACACAGGATCTCTCGTTCATCCATCTTTTTTTTCGCTTCTCTCCGTCATCATGAAGGCCTCCAGCTGCAAATAGTCGCATTTCAATTACTCTCCACTCTCATTGCTTTTCCAGAACCTCATGACTAACTGTGTCCGAAATGKGCTACTTTTATATTTGTCTAGTACAATTTTCAATTTGCGTCAATCAAAACTTTGGCCTGGAACATATCGTAAAATCCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb349</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1578743</contig_pos>
        <strand>+</strand>
        <context>CTGTACTTTC[A/C]AAACACAGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTCCGCATCTATCTCAGATCATTGACCAATCGTATAACCTGTACTTTC</left_flank>
        <right_flank>AAACACAGGATCTCTCGTTCATCCATCTTTTTTTTCGCTTCTCTCCGTCA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACGTGGCTTATCGAAGAGAAGGCTATATAAGGAAAAGAATTGGAAGGATCAAGCAGTATCAAGGAAATCTCTCCTTCAATCTCCAACTGCTCCCGCCACCGATGTCTGCCTCCAACTCCAACGGAATCGCCAAGTCCTCCAAGGCCAAAACCACCAATGCCGGATCCTCTGGAACCGCAACTCAAGAAGCTCCAACTGACACCGTCATGGAGGATCTCTCGTCCGGACCACTGCTTCTACTTCCGAAAGGTACAACTCAGTTTACGGTTGATAGTTTCAATAAAGTTGTTTCCTCTACTCTTGTTCAACTTGCTCATCAGTCTCATAGGTCAATAAAACCTATCTGGGGCAGCACATGTTATTTCATTTGAGACGCTCTCATCTCCCTGTTTTTTTTTCGGAATTCTCGTTTTATTTTTTGTACAAGCCGTTGATAATCACAATAAGTTTTTCCGCATCTATCTCAGATCATTGACCAATCGTATAACCTGTACTTTCCAAACACAGGATCTCTCGTTCATCCATCTTTTTTTTCGCTTCTCTCCGTCATCATGAAGGCCTCCAGCTGCAAATAGTCGCATTTCAATTACTCTCCACTCTCATTGCTTTTCCAGAACCTCATGACTAACTGTGTCCGAAATGTGCTACTTTTATATTTGTCTAGTACAATTTTCAATTTGCGTCAATCAAAACTTTGGCCTGGAACATATCGTAAAATCCAGTATTCGCCATCAGGGCACCTCTTCTTGTTCTTATTGACAAGAGCGCGAGCTGGGCGGAGCCTCCATCCCTTCCATTCCTCCCTTCCCATTGCCCCACTTCTCTATTTTCCATTTCGAATTTCAATTTTTCTCTCCAACCCCAAAATGAATTCGACTCCTTTTTCTCGAATTTGAATTTTCCGAGTACAAAATTTGATAGCTCTCCCACTAGCTAACCCATTTGTTCTATTTTCAGCTTGAGATGAACCTTACCGTACTGGCTGAACTGATTGAGCTC</canonical>
            <polymorphic>CACGTGGCTTATCGAAGAGAAGGCTATATAAGGAAAAGAATTGGAAGGATCAAGCAGTATCAAGGAAATCTCTCCTTCAATCTCCAACTGCTCCCGCCACCGATGTCTGCCTCCAACTCCAACGGAATCGCCAAGTCCTCCAAGGCCAAAACCACCAATGCCGGATCCTCTGGAACCGCAACTCAAGAAGCTCCAACTGACACCGTCATGGAGGATCTCTCGTCCGGACCACTGCTTCTACTTCCGAAAGGTACAACTCAGTTTACGGTTGATAGTTTCAATAAAGTTGTTTCCTCTACTCTTGTTCAACTTGCTCATCAGTCTCATAGGTCAATAAAACCTATCTGGGGCAGCACATGTTATTTCATTTGAGACGCTCTCATCTCCCTGTTTTTTTTTCGGAATTCTCGTTTTATTTTTTGTACAAGCCGTTGATAATCACAATAAGTTTTTCCGCATCTATCTCAGATCATTGACCAATCGTATAACCTGTACTTTCMAAACACAGGATCTCTCGTTCATCCATCTTTTTTTTCGCTTCTCTCCGTCATCATGAAGGCCTCCAGCTGCAAATAGTCGCATTTCAATTACTCTCCACTCTCATTGCTTTTCCAGAACCTCATGACTAACTGTGTCCGAAATGTGCTACTTTTATATTTGTCTAGTACAATTTTCAATTTGCGTCAATCAAAACTTTGGCCTGGAACATATCGTAAAATCCAGTATTCGCCATCAGGGCACCTCTTCTTGTTCTTATTGACAAGAGCGCGAGCTGGGCGGAGCCTCCATCCCTTCCATTCCTCCCTTCCCATTGCCCCACTTCTCTATTTTCCATTTCGAATTTCAATTTTTCTCTCCAACCCCAAAATGAATTCGACTCCTTTTTCTCGAATTTGAATTTTCCGAGTACAAAATTTGATAGCTCTCCCACTAGCTAACCCATTTGTTCTATTTTCAGCTTGAGATGAACCTTACCGTACTGGCTGAACTGATTGAGCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>495 346 159</canonical_bands>
                <polymorphic_bands>654 346</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAAGTTTTTCCGCATCTATCT</pcr_primer_p1>
		<pcr_primer_p2>GACGCAAATTGAAAATTGTACT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AATAAGTTTTTCCGCATCTATCTCAGATCATTGACCAATCGTATAACCTGTACTTTCCAAACACAGGATCTCTCGTTCATCCATCTTTTTTTTCGCTTCTCTCCGTCATCATGAAGGCCTCCAGCTGCAAATAGTCGCATTTCAATTACTCTCCACTCTCATTGCTTTTCCAGAACCTCATGACTAACTGTGTCCGAAATGTGCTACTTTTATATTTGTCTAGTACAATTTTCAATTTGCGTC</canonical_amplicon>
		<polymorphic_amplicon>AATAAGTTTTTCCGCATCTATCTCAGATCATTGACCAATCGTATAACCTGTACTTTCMAAACACAGGATCTCTCGTTCATCCATCTTTTTTTTCGCTTCTCTCCGTCATCATGAAGGCCTCCAGCTGCAAATAGTCGCATTTCAATTACTCTCCACTCTCATTGCTTTTCCAGAACCTCATGACTAACTGTGTCCGAAATGTGCTACTTTTATATTTGTCTAGTACAATTTTCAATTTGCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb350</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1644571</contig_pos>
        <strand>+</strand>
        <context>GTGCGTGTCA[A/G]GCGGCATACG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGTGGTCCGAGCTGAAAGGGAAAAAATGGCCAATCCTTGGTGCGTGTCA</left_flank>
        <right_flank>GCGGCATACGGTATCACTATCGATGTGAGATTTAAAATATATTGTTATCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGGCAACGGTCCCAACCAGGCTTAACCTGGAAACCCTATTGGAAACATCGGGAATCGTAATTTTTGTTTCAACGAAGAAACACAATTCAGCAACAAAAACGAACGTTTTGGTGAAAATTGAGAATTCCAGCATTTCTTTACTTGAATTTTTTCAGAGTGTATGTTGTTTATAATTATAGGCTTAGGCTGAAAGACCTTTAAAAAAAACGTTTTGGCCTAAGCCTACAATACAAAAATCGTAAAATTTTGTGAAACATTCCTGTCAAAAAGTATTGAAATTCCCAAGTATAAGTAAAATGTTAAATTTTCCACTGGATTTTTTAAAGACCGTTCCGTTTTTTTGGTCCGATGATGGGACCGGCGGTCCCGTTTTGGGACCGTTCTTCCCGGAAAGAGCCATAGTTTTTACGGTAAGCGAAATTAAAATTTTAGTGGACATACCTCTGAAGAGTGGTCCGAGCTGAAAGGGAAAAAATGGCCAATCCTTGGTGCGTGTCAGGCGGCATACGGTATCACTATCGATGTGAGATTTAAAATATATTGTTATCTATTTGTATTTCTTCCTACAGATCCTCTACTTACCAATCCTTTCAATCATTTTTGAGAAAGAAAACTTCAAAATGTCCTGTTTCAAAATCATGTACCTCTTGGGAATCATCGACTTCTGTATCACCTACGTCAACTCAATTCTCACTGGATGGTTGGCTATGAAAGGAGCAGTTTACTGTACCCATCCGAACATCATCTACATCTCTGGAATGATTGTTTGTGCACTCTGGTGCAGCTCCTGCATGACTGCTCTTCTTCTTGTTGCTAATCGTTTGTTGGGAATGACTAAGCCATCATTAGCTGTCAAAATTTTCGATGGGTCAGTTAGAAAATGATATTTAAAATATTTTAATTAGTTTTCGAACTTCAGAAGGAAGACCTATGTCGCTCTGATGTTTCCAATCCTCTACTTCATCTACTTCCTCTTCACCGCGCCGCTGGTATTCAATT</canonical>
            <polymorphic>ACGGCAACGGTCCCAACCAGGCTTAACCTGGAAACCCTATTGGAAACATCGGGAATCGTAATTTTTGTTTCAACGAAGAAACACAATTCAGCAACAAAAACGAACGTTTTGGTGAAAATTGAGAATTCCAGCATTTCTTTACTTGAATTTTTTCAGAGTGTATGTTGTTTATAATTATAGGCTTAGGCTGAAAGACCTTTAAAAAAAACGTTTTGGCCTAAGCCTACAATACAAAAATCGTAAAATTTTGTGAAACATTCCTGTCAAAAAGTATTGAAATTCCCAAGTATAAGTAAAATGTTAAATTTTCCACTGGATTTTTTAAAGACCGTTCCGTTTTTTTGGTCCGATGATGGGACCGGCGGTCCCGTTTTGGGACCGTTCTTCCCGGAAAGAGCCATAGTTTTTACGGTAAGCGAAATTAAAATTTTAGTGGACATACCTCTGAAGAGTGGTCCGAGCTGAAAGGGAAAAAATGGCCAATCCTTGGTGCGTGTCARGCGGCATACGGTATCACTATCGATGTGAGATTTAAAATATATTGTTATCTATTTGTATTTCTTCCTACAGATCCTCTACTTACCAATCCTTTCAATCATTTTTGAGAAAGAAAACTTCAAAATGTCCTGTTTCAAAATCATGTACCTCTTGGGAATCATCGACTTCTGTATCACCTACGTCAACTCAATTCTCACTGGATGGTTGGCTATGAAAGGAGCAGTTTACTGTACCCATCCGAACATCATCTACATCTCTGGAATGATTGTTTGTGCACTCTGGTGCAGCTCCTGCATGACTGCTCTTCTTCTTGTTGCTAATCGTTTGTTGGGAATGACTAAGCCATCATTAGCTGTCAAAATTTTCGATGGGTCAGTTAGAAAATGATATTTAAAATATTTTAATTAGTTTTCGAACTTCAGAAGGAAGACCTATGTCGCTCTGATGTTTCCAATCCTCTACTTCATCTACTTCCTCTTCACCGCGCCGCTGGTATTCAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>480 361 139 15 5</canonical_bands>
                <polymorphic_bands>619 361 15 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTAGTGGACATACCTCTGAAG</pcr_primer_p1>
		<pcr_primer_p2>TAGGTGATACAGAAGTCGATGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTAGTGGACATACCTCTGAAGAGTGGTCCGAGCTGAAAGGGAAAAAATGGCCAATCCTTGGTGCGTGTCAGGCGGCATACGGTATCACTATCGATGTGAGATTTAAAATATATTGTTATCTATTTGTATTTCTTCCTACAGATCCTCTACTTACCAATCCTTTCAATCATTTTTGAGAAAGAAAACTTCAAAATGTCCTGTTTCAAAATCATGTACCTCTTGGGAATCATCGACTTCTGTATCACCTA</canonical_amplicon>
		<polymorphic_amplicon>TTTTAGTGGACATACCTCTGAAGAGTGGTCCGAGCTGAAAGGGAAAAAATGGCCAATCCTTGGTGCGTGTCARGCGGCATACGGTATCACTATCGATGTGAGATTTAAAATATATTGTTATCTATTTGTATTTCTTCCTACAGATCCTCTACTTACCAATCCTTTCAATCATTTTTGAGAAAGAAAACTTCAAAATGTCCTGTTTCAAAATCATGTACCTCTTGGGAATCATCGACTTCTGTATCACCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb372</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1645618</contig_pos>
        <strand>+</strand>
        <context>TTTTCTTACT[C/T]TTACAATTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGAGTGGAGCATCTCCTGTTGTCATTGTTAATTGAAACGTTTTCTTACT</left_flank>
        <right_flank>TTACAATTGTTTGCATTCCTGATGTTCTACAGTTACTGTGCTTCCTCTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCACTGAATACTTCAATCACTCCCACACAATCAACAACTTCTTGATTGTAACTCTCACATGCATCGTCTACACTCCCTTTCGTTGGGTCATTGGAACCAATCTGAAACATGTTAAGAACGCCAACACTTCTCAGCTACAGAATACGGTATTTCTTATGAAATCTTGTGTAAAATATACAACTTTTTTCAGAAAACCCAAGTATTCCTTCAGTCCACTCTGATATGTGCTGCCAATCAAGTTTGTGCTGTCATCTACGTCGTCATGAATGTAACTGAAGTTCCCGACTGGATCATAATTTTTGCTCATTTCACTTGGGAATTCATCCACGGAGCTCCGGTTTTCATTTATCTCGCATTGAACCGAATGATTCGAGAACGGTTTCTGGAAAAGATGAATGTGATGAAGGGAGGAGCGTTTCGAGAGACCACCTCGATGATGCCGATCAACAAGAGTGGAGCATCTCCTGTTGTCATTGTTAATTGAAACGTTTTCTTACTTTTACAATTGTTTGCATTCCTGATGTTCTACAGTTACTGTGCTTCCTCTAATAGTATCCCAACTTTGATCTCAATTATCTTGTTTCCTGTGAAAATTTTCGAACATTTGTCAACTAATGAACTATTTATCATAACATCATCAAAATTTTATGAGTTGACAAATTTTTCATATCTTTCACAAGAATCGAGATAATTGAAAAACGGTTTTGTATGGGCTTCTACTAGAGGAACTGCGGTAACACTATTTTGACCGAACCGTGAAAACACTCTCAAAATCATAATTTCTTCAAATACACACCAAAATCGACCTCAACTACCCGATCTGTATCTCTGAACGAAACTGAAACTGATAAACTGATTTTTATATTAACTTGATCATTCCTGTGATCAGCTGGGTTTAATTATGGCATTGGTGAGAACAAGGCTATTCAATTATTTTCTCTCCCAACCCATCATGATCATTGGTTTCAAAGACCTTTAAAAGTCAACATGCCACACCTT</canonical>
            <polymorphic>GCCACTGAATACTTCAATCACTCCCACACAATCAACAACTTCTTGATTGTAACTCTCACATGCATCGTCTACACTCCCTTTCGTTGGGTCATTGGAACCAATCTGAAACATGTTAAGAACGCCAACACTTCTCAGCTACAGAATACGGTATTTCTTATGAAATCTTGTGTAAAATATACAACTTTTTTCAGAAAACCCAAGTATTCCTTCAGTCCACTCTGATATGTGCTGCCAATCAAGTTTGTGCTGTCATCTACGTCGTCATGAATGTAACTGAAGTTCCCGACTGGATCATAATTTTTGCTCATTTCACTTGGGAATTCATCCACGGAGCTCCGGTTTTCATTTATCTCGCATTGAACCGAATGATTCGAGAACGGTTTCTGGAAAAGATGAATGTGATGAAGGGAGGAGCGTTTCGAGAGACCACCTCGATGATGCCGATCAACAAGAGTGGAGCATCTCCTGTTGTCATTGTTAATTGAAACGTTTTCTTACTYTTACAATTGTTTGCATTCCTGATGTTCTACAGTTACTGTGCTTCCTCTAATAGTATCCCAACTTTGATCTCAATTATCTTGTTTCCTGTGAAAATTTTCGAACATTTGTCAACTAATGAACTATTTATCATAACATCATCAAAATTTTATGAGTTGACAAATTTTTCATATCTTTCACAAGAATCGAGATAATTGAAAAACGGTTTTGTATGGGCTTCTACTAGAGGAACTGCGGTAACACTATTTTGACCGAACCGTGAAAACACTCTCAAAATCATAATTTCTTCAAATACACACCAAAATCGACCTCAACTACCCGATCTGTATCTCTGAACGAAACTGAAACTGATAAACTGATTTTTATATTAACTTGATCATTCCTGTGATCAGCTGGGTTTAATTATGGCATTGGTGAGAACAAGGCTATTCAATTATTTTCTCTCCCAACCCATCATGATCATTGGTTTCAAAGACCTTTAAAAGTCAACATGCCACACCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAACAAGAGTGGAGCATCT</pcr_primer_p1>
		<pcr_primer_p2>TCTAGTAGAAGCCCATACAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>281</pcr_amplicon_size>
		<canonical_amplicon>TCAACAAGAGTGGAGCATCTCCTGTTGTCATTGTTAATTGAAACGTTTTCTTACTTTTACAATTGTTTGCATTCCTGATGTTCTACAGTTACTGTGCTTCCTCTAATAGTATCCCAACTTTGATCTCAATTATCTTGTTTCCTGTGAAAATTTTCGAACATTTGTCAACTAATGAACTATTTATCATAACATCATCAAAATTTTATGAGTTGACAAATTTTTCATATCTTTCACAAGAATCGAGATAATTGAAAAACGGTTTTGTATGGGCTTCTACTAGA</canonical_amplicon>
		<polymorphic_amplicon>TCAACAAGAGTGGAGCATCTCCTGTTGTCATTGTTAATTGAAACGTTTTCTTACTYTTACAATTGTTTGCATTCCTGATGTTCTACAGTTACTGTGCTTCCTCTAATAGTATCCCAACTTTGATCTCAATTATCTTGTTTCCTGTGAAAATTTTCGAACATTTGTCAACTAATGAACTATTTATCATAACATCATCAAAATTTTATGAGTTGACAAATTTTTCATATCTTTCACAAGAATCGAGATAATTGAAAAACGGTTTTGTATGGGCTTCTACTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb373</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1645321</contig_pos>
        <strand>+</strand>
        <context>AAACCCAAGT[A/G]TTCCTTCAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTATGAAATCTTGTGTAAAATATACAACTTTTTTCAGAAAACCCAAGT</left_flank>
        <right_flank>TTCCTTCAGTCCACTCTGATATGTGCTGCCAATCAAGTTTGTGCTGTCAT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTCTGGAATGATTGTTTGTGCACTCTGGTGCAGCTCCTGCATGACTGCTCTTCTTCTTGTTGCTAATCGTTTGTTGGGAATGACTAAGCCATCATTAGCTGTCAAAATTTTCGATGGGTCAGTTAGAAAATGATATTTAAAATATTTTAATTAGTTTTCGAACTTCAGAAGGAAGACCTATGTCGCTCTGATGTTTCCAATCCTCTACTTCATCTACTTCCTCTTCACCGCGCCGCTGGTATTCAATTCCAAGTACCTCGCTTGGTTCTACACCCCAATGATATTTGACGACGGTGCCACTGAATACTTCAATCACTCCCACACAATCAACAACTTCTTGATTGTAACTCTCACATGCATCGTCTACACTCCCTTTCGTTGGGTCATTGGAACCAATCTGAAACATGTTAAGAACGCCAACACTTCTCAGCTACAGAATACGGTATTTCTTATGAAATCTTGTGTAAAATATACAACTTTTTTCAGAAAACCCAAGTATTCCTTCAGTCCACTCTGATATGTGCTGCCAATCAAGTTTGTGCTGTCATCTACGTCGTCATGAATGTAACTGAAGTTCCCGACTGGATCATAATTTTTGCTCATTTCACTTGGGAATTCATCCACGGAGCTCCGGTTTTCATTTATCTCGCATTGAACCGAATGATTCGAGAACGGTTTCTGGAAAAGATGAATGTGATGAAGGGAGGAGCGTTTCGAGAGACCACCTCGATGATGCCGATCAACAAGAGTGGAGCATCTCCTGTTGTCATTGTTAATTGAAACGTTTTCTTACTTTTACAATTGTTTGCATTCCTGATGTTCTACAGTTACTGTGCTTCCTCTAATAGTATCCCAACTTTGATCTCAATTATCTTGTTTCCTGTGAAAATTTTCGAACATTTGTCAACTAATGAACTATTTATCATAACATCATCAAAATTTTATGAGTTGACAAATTTTTCATATCTTTCACAAGAATCGAGATAATTGAAAAACGG</canonical>
            <polymorphic>ATCTCTGGAATGATTGTTTGTGCACTCTGGTGCAGCTCCTGCATGACTGCTCTTCTTCTTGTTGCTAATCGTTTGTTGGGAATGACTAAGCCATCATTAGCTGTCAAAATTTTCGATGGGTCAGTTAGAAAATGATATTTAAAATATTTTAATTAGTTTTCGAACTTCAGAAGGAAGACCTATGTCGCTCTGATGTTTCCAATCCTCTACTTCATCTACTTCCTCTTCACCGCGCCGCTGGTATTCAATTCCAAGTACCTCGCTTGGTTCTACACCCCAATGATATTTGACGACGGTGCCACTGAATACTTCAATCACTCCCACACAATCAACAACTTCTTGATTGTAACTCTCACATGCATCGTCTACACTCCCTTTCGTTGGGTCATTGGAACCAATCTGAAACATGTTAAGAACGCCAACACTTCTCAGCTACAGAATACGGTATTTCTTATGAAATCTTGTGTAAAATATACAACTTTTTTCAGAAAACCCAAGTRTTCCTTCAGTCCACTCTGATATGTGCTGCCAATCAAGTTTGTGCTGTCATCTACGTCGTCATGAATGTAACTGAAGTTCCCGACTGGATCATAATTTTTGCTCATTTCACTTGGGAATTCATCCACGGAGCTCCGGTTTTCATTTATCTCGCATTGAACCGAATGATTCGAGAACGGTTTCTGGAAAAGATGAATGTGATGAAGGGAGGAGCGTTTCGAGAGACCACCTCGATGATGCCGATCAACAAGAGTGGAGCATCTCCTGTTGTCATTGTTAATTGAAACGTTTTCTTACTTTTACAATTGTTTGCATTCCTGATGTTCTACAGTTACTGTGCTTCCTCTAATAGTATCCCAACTTTGATCTCAATTATCTTGTTTCCTGTGAAAATTTTCGAACATTTGTCAACTAATGAACTATTTATCATAACATCATCAAAATTTTATGAGTTGACAAATTTTTCATATCTTTCACAAGAATCGAGATAATTGAAAAACGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATACTTCAATCACTCCCACAC</pcr_primer_p1>
		<pcr_primer_p2>GTAGATGACAGCACAAACTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATACTTCAATCACTCCCACACAATCAACAACTTCTTGATTGTAACTCTCACATGCATCGTCTACACTCCCTTTCGTTGGGTCATTGGAACCAATCTGAAACATGTTAAGAACGCCAACACTTCTCAGCTACAGAATACGGTATTTCTTATGAAATCTTGTGTAAAATATACAACTTTTTTCAGAAAACCCAAGTATTCCTTCAGTCCACTCTGATATGTGCTGCCAATCAAGTTTGTGCTGTCATCTAC</canonical_amplicon>
		<polymorphic_amplicon>AATACTTCAATCACTCCCACACAATCAACAACTTCTTGATTGTAACTCTCACATGCATCGTCTACACTCCCTTTCGTTGGGTCATTGGAACCAATCTGAAACATGTTAAGAACGCCAACACTTCTCAGCTACAGAATACGGTATTTCTTATGAAATCTTGTGTAAAATATACAACTTTTTTCAGAAAACCCAAGTRTTCCTTCAGTCCACTCTGATATGTGCTGCCAATCAAGTTTGTGCTGTCATCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb387</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1691276</contig_pos>
        <strand>+</strand>
        <context>GACTGCATGT[C/T]CTCGTTCACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCAGATCATGACCGACTAGTCCCGGATTACTGTACACCAGACTGCATGT</left_flank>
        <right_flank>CTCGTTCACTGATAGAGTGTCAAACCTTCCCAGATTGTTCACTTCCTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACATGTGTAAGAACATCCATGTCCGTTTCTCTGGATATGACTCAGGAGTAGACGACTAGCTTCCCCGGAAACCGCTTAGCCATATATTTCAGAGAAATATGACGATTGGAAGGAAATGGAAAAGCTCTTGGAATGTTCGGAGAGAGATGTTCAAATAGTAAATGATTAGTTCGGATTTGGTGGTCTGGGAGTCTGGAAAGAACAACTATTTGGTCTTACTTTTGGTTCTGCTACGTCAGATATACGTAACTGATACTGTAGGAGCGCATAGAGCATTTTTAATTAGGAGTAAATTGATTAGTTGTTCCCAAGATTACTGTAGTTCGTGTATTGAAGCTGAATGCGATACTCTGTATTCAAGTATGATGGAAAATTGGCTCAGCTTGGTTCAATTTCATTAGAAAAGTTACTTTTTACAAACTGTGACTAGGTCAATGCCGCAAAATGTCCAGATCATGACCGACTAGTCCCGGATTACTGTACACCAGACTGCATGTTCTCGTTCACTGATAGAGTGTCAAACCTTCCCAGATTGTTCACTTCCTTTTCAAAAAAAGCCCATGATGATCTCGCATGGGGATCATCGTCAGATCCGGAATCGTGGTGCCTACTGAAAAGACCAAAAAGGAGAAGGATAAGTGCCCTTTCGCTAAGAAGTGACGTCTCAAAAACCTTATGAAGTCTCACGGTAAGACCTTGAGACTGTCTAGCTTCTTCTTTGTCTTCTTTTCCATTTTTTGAAGCCGACTGTACGTTCCTCATCGCCTTATCTCCTATCTCAAAAACCTTGATTCCTTCGCTTCAAACAGGTAGGCGAAAAACTCATCAATTTTATCATACGTTCCTTCTTCTTCTCTTCTCAAATCGAAAATAACGAAGAGGGCAACAAATTAGGATAGTGTAACAAAAATAGAGTTCTTCAGAAGGAGAGGAATTGAAAATTACAACACCGTCTTTTTTGGGTTCTGATTCTCATGGAGGCCATCTTTTGCGCAGTG</canonical>
            <polymorphic>TCACATGTGTAAGAACATCCATGTCCGTTTCTCTGGATATGACTCAGGAGTAGACGACTAGCTTCCCCGGAAACCGCTTAGCCATATATTTCAGAGAAATATGACGATTGGAAGGAAATGGAAAAGCTCTTGGAATGTTCGGAGAGAGATGTTCAAATAGTAAATGATTAGTTCGGATTTGGTGGTCTGGGAGTCTGGAAAGAACAACTATTTGGTCTTACTTTTGGTTCTGCTACGTCAGATATACGTAACTGATACTGTAGGAGCGCATAGAGCATTTTTAATTAGGAGTAAATTGATTAGTTGTTCCCAAGATTACTGTAGTTCGTGTATTGAAGCTGAATGCGATACTCTGTATTCAAGTATGATGGAAAATTGGCTCAGCTTGGTTCAATTTCATTAGAAAAGTTACTTTTTACAAACTGTGACTAGGTCAATGCCGCAAAATGTCCAGATCATGACCGACTAGTCCCGGATTACTGTACACCAGACTGCATGTYCTCGTTCACTGATAGAGTGTCAAACCTTCCCAGATTGTTCACTTCCTTTTCAAAAAAAGCCCATGATGATCTCGCATGGGGATCATCGTCAGATCCGGAATCGTGGTGCCTACTGAAAAGACCAAAAAGGAGAAGGATAAGTGCCCTTTCGCTAAGAAGTGACGTCTCAAAAACCTTATGAAGTCTCACGGTAAGACCTTGAGACTGTCTAGCTTCTTCTTTGTCTTCTTTTCCATTTTTTGAAGCCGACTGTACGTTCCTCATCGCCTTATCTCCTATCTCAAAAACCTTGATTCCTTCGCTTCAAACAGGTAGGCGAAAAACTCATCAATTTTATCATACGTTCCTTCTTCTTCTCTTCTCAAATCGAAAATAACGAAGAGGGCAACAAATTAGGATAGTGTAACAAAAATAGAGTTCTTCAGAAGGAGAGGAATTGAAAATTACAACACCGTCTTTTTTGGGTTCTGATTCTCATGGAGGCCATCTTTTGCGCAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGGTTCAATTTCATTAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTCCTTTTTGGTCTTTTCAGTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTTGGTTCAATTTCATTAGAAAAGTTACTTTTTACAAACTGTGACTAGGTCAATGCCGCAAAATGTCCAGATCATGACCGACTAGTCCCGGATTACTGTACACCAGACTGCATGTTCTCGTTCACTGATAGAGTGTCAAACCTTCCCAGATTGTTCACTTCCTTTTCAAAAAAAGCCCATGATGATCTCGCATGGGGATCATCGTCAGATCCGGAATCGTGGTGCCTACTGAAAAGACCAAAAAGGAG</canonical_amplicon>
		<polymorphic_amplicon>CTTGGTTCAATTTCATTAGAAAAGTTACTTTTTACAAACTGTGACTAGGTCAATGCCGCAAAATGTCCAGATCATGACCGACTAGTCCCGGATTACTGTACACCAGACTGCATGTYCTCGTTCACTGATAGAGTGTCAAACCTTCCCAGATTGTTCACTTCCTTTTCAAAAAAAGCCCATGATGATCTCGCATGGGGATCATCGTCAGATCCGGAATCGTGGTGCCTACTGAAAAGACCAAAAAGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb388</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1693529</contig_pos>
        <strand>+</strand>
        <context>TGCCAGAGAA[C/T]TGAACGAGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAGCTCTTGTTCAAAACACGTATTCCTGTTCTTTATCTATGCCAGAGAA</left_flank>
        <right_flank>TGAACGAGTTGTCTCTGTCGTGTCGTCTGCCCTATTCAGAAGGACCTTCT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGTACTCATTTTTACGTTTAGCGGGAGAAGGAGGTCTAAAGAGCTCCACTAGCCAGTTTTTCTATTTTTTGTGTGTCCATTACTAGCTTGATGACTTTTGTATGCACTAACTGGAACATGAAATACCAGTTTTTTAGAGACCATATTTTTTAGAAAATAGTTTAAGAGGAACGTTCCTCGAGGTTCTTGAGCTTGATTAAATTTACCTAATGCTTTTTTCCGGGACCGGTTTGTTTTTAATTTTTAGAATAAGAAAACTAGAAAATGTTTATCTAGCTTTTGGTGGACTATATTTGATGAGCTGTAAAAAGACAAGTTTCGATTTATGGACTGTATTCTTGAGTAGGTCATTTTTCCCTATAACTTTTCTTCTTATATTCTCGATTCAGACGTTTCCTTACAGTACTACGTTCATCGAACTAGGTCAATTGAATTCACATGTCCTTTGAGCTCTTGTTCAAAACACGTATTCCTGTTCTTTATCTATGCCAGAGAACTGAACGAGTTGTCTCTGTCGTGTCGTCTGCCCTATTCAGAAGGACCTTCTCAGAATCGTAGCGTTCTTTTTCTTCTTCTGTTTTTGTCACGATGCTTGTCCTCGATGCTTTGTCGGTTTTCCCATGAACGAGTACTTCATCACTACTCGGTCCCTCGCCAAGCTTTTTGGTTACTCTTCTGATGCATCTTCTCATCGAATGATCATCCATATATTTTTGCTATGTTTGAAAATAAATTTTCGGTCCAAGCACACACATACGCAAACGCACTCTTCGCCCTTTTCCGAGACGTTTCTCTCTCTCTCCGCGTGGTCGAAAAGCGATTTGCCCTTTGAATGTACTCTTTTTTTTTCGAGTGAAACACCACCGCACACATTTATACACTCACTCACTCATCCTTCTTCCTCTTTTGAAACAAACTTGACTTGTTGGATGTGTGAGCGTGGCGCCAGAAGATTTGGCTCCTTTTTCCTCTCTCATCGCCGGAGAGTGGCCGGGAC</canonical>
            <polymorphic>TTTTGTACTCATTTTTACGTTTAGCGGGAGAAGGAGGTCTAAAGAGCTCCACTAGCCAGTTTTTCTATTTTTTGTGTGTCCATTACTAGCTTGATGACTTTTGTATGCACTAACTGGAACATGAAATACCAGTTTTTTAGAGACCATATTTTTTAGAAAATAGTTTAAGAGGAACGTTCCTCGAGGTTCTTGAGCTTGATTAAATTTACCTAATGCTTTTTTCCGGGACCGGTTTGTTTTTAATTTTTAGAATAAGAAAACTAGAAAATGTTTATCTAGCTTTTGGTGGACTATATTTGATGAGCTGTAAAAAGACAAGTTTCGATTTATGGACTGTATTCTTGAGTAGGTCATTTTTCCCTATAACTTTTCTTCTTATATTCTCGATTCAGACGTTTCCTTACAGTACTACGTTCATCGAACTAGGTCAATTGAATTCACATGTCCTTTGAGCTCTTGTTCAAAACACGTATTCCTGTTCTTTATCTATGCCAGAGAAYTGAACGAGTTGTCTCTGTCGTGTCGTCTGCCCTATTCAGAAGGACCTTCTCAGAATCGTAGCGTTCTTTTTCTTCTTCTGTTTTTGTCACGATGCTTGTCCTCGATGCTTTGTCGGTTTTCCCATGAACGAGTACTTCATCACTACTCGGTCCCTCGCCAAGCTTTTTGGTTACTCTTCTGATGCATCTTCTCATCGAATGATCATCCATATATTTTTGCTATGTTTGAAAATAAATTTTCGGTCCAAGCACACACATACGCAAACGCACTCTTCGCCCTTTTCCGAGACGTTTCTCTCTCTCTCCGCGTGGTCGAAAAGCGATTTGCCCTTTGAATGTACTCTTTTTTTTTCGAGTGAAACACCACCGCACACATTTATACACTCACTCACTCATCCTTCTTCCTCTTTTGAAACAAACTTGACTTGTTGGATGTGTGAGCGTGGCGCCAGAAGATTTGGCTCCTTTTTCCTCTCTCATCGCCGGAGAGTGGCCGGGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGTAGGTCATTTTTCCCTAT</pcr_primer_p1>
		<pcr_primer_p2>GTGACAAAAACAGAAGAAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGAGTAGGTCATTTTTCCCTATAACTTTTCTTCTTATATTCTCGATTCAGACGTTTCCTTACAGTACTACGTTCATCGAACTAGGTCAATTGAATTCACATGTCCTTTGAGCTCTTGTTCAAAACACGTATTCCTGTTCTTTATCTATGCCAGAGAACTGAACGAGTTGTCTCTGTCGTGTCGTCTGCCCTATTCAGAAGGACCTTCTCAGAATCGTAGCGTTCTTTTTCTTCTTCTGTTTTTGTCAC</canonical_amplicon>
		<polymorphic_amplicon>TTGAGTAGGTCATTTTTCCCTATAACTTTTCTTCTTATATTCTCGATTCAGACGTTTCCTTACAGTACTACGTTCATCGAACTAGGTCAATTGAATTCACATGTCCTTTGAGCTCTTGTTCAAAACACGTATTCCTGTTCTTTATCTATGCCAGAGAAYTGAACGAGTTGTCTCTGTCGTGTCGTCTGCCCTATTCAGAAGGACCTTCTCAGAATCGTAGCGTTCTTTTTCTTCTTCTGTTTTTGTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb389</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1693416</contig_pos>
        <strand>+</strand>
        <context>TAYATTCTCG[A/G]TTCAGACGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTCTTGAGTAGGTCATTTTTCCCTATAACTTTTCTTCTTATATTCTCG</left_flank>
        <right_flank>TTCAGACGTTTCCTTACAGTACTACGTTCATCGAACTAGGTCAATTGAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGGGTTGAACATACAAGCAAAGAAGGAGCACGGGAGCTCTGAAAGGAAGAAAGAGCTAAAAGCTGAAAATACTGGGCGGCGGTTGTTGTTGACAATTTCAGTGTGTGTTTGTTTTTGTACTCATTTTTACGTTTAGCGGGAGAAGGAGGTCTAAAGAGCTCCACTAGCCAGTTTTTCTATTTTTTGTGTGTCCATTACTAGCTTGATGACTTTTGTATGCACTAACTGGAACATGAAATACCAGTTTTTTAGAGACCATATTTTTTAGAAAATAGTTTAAGAGGAACGTTCCTCGAGGTTCTTGAGCTTGATTAAATTTACCTAATGCTTTTTTCCGGGACCGGTTTGTTTTTAATTTTTAGAATAAGAAAACTAGAAAATGTTTATCTAGCTTTTGGTGGACTATATTTGATGAGCTGTAAAAAGACAAGTTTCGATTTATGGACTGTATTCTTGAGTAGGTCATTTTTCCCTATAACTTTTCTTCTTATATTCTCGATTCAGACGTTTCCTTACAGTACTACGTTCATCGAACTAGGTCAATTGAATTCACATGTCCTTTGAGCTCTTGTTCAAAACACGTATTCCTGTTCTTTATCTATGCCAGAGAACTGAACGAGTTGTCTCTGTCGTGTCGTCTGCCCTATTCAGAAGGACCTTCTCAGAATCGTAGCGTTCTTTTTCTTCTTCTGTTTTTGTCACGATGCTTGTCCTCGATGCTTTGTCGGTTTTCCCATGAACGAGTACTTCATCACTACTCGGTCCCTCGCCAAGCTTTTTGGTTACTCTTCTGATGCATCTTCTCATCGAATGATCATCCATATATTTTTGCTATGTTTGAAAATAAATTTTCGGTCCAAGCACACACATACGCAAACGCACTCTTCGCCCTTTTCCGAGACGTTTCTCTCTCTCTCCGCGTGGTCGAAAAGCGATTTGCCCTTTGAATGTACTCTTTTTTTTTCGAGTGAAACACCACCGCACACATTTATACACTCA</canonical>
            <polymorphic>GGGGGTTGAACATACAAGCAAAGAAGGAGCACGGGAGCTCTGAAAGGAAGAAAGAGCTAAAAGCTGAAAATACTGGGCGGCGGTTGTTGTTGACAATTTCAGTGTGTGTTTGTTTTTGTACTCATTTTTACGTTTAGCGGGAGAAGGAGGTCTAAAGAGCTCCACTAGCCAGTTTTTCTATTTTTTGTGTGTCCATTACTAGCTTGATGACTTTTGTATGCACTAACTGGAACATGAAATACCAGTTTTTTAGAGACCATATTTTTTAGAAAATAGTTTAAGAGGAACGTTCCTCGAGGTTCTTGAGCTTGATTAAATTTACCTAATGCTTTTTTCCGGGACCGGTTTGTTTTTAATTTTTAGAATAAGAAAACTAGAAAATGTTTATCTAGCTTTTGGTGGACTATATTTGATGAGCTGTAAAAAGACAAGTTTCGATTTATGGACTGTATTCTTGAGTAGGTCATTTTTCCCTATAACTTTTCTTCTTATATTCTCGRTTCAGACGTTTCCTTACAGTACTACGTTCATCGAACTAGGTCAATTGAATTCACATGTCCTTTGAGCTCTTGTTCAAAACACGTATTCCTGTTCTTTATCTATGCCAGAGAACTGAACGAGTTGTCTCTGTCGTGTCGTCTGCCCTATTCAGAAGGACCTTCTCAGAATCGTAGCGTTCTTTTTCTTCTTCTGTTTTTGTCACGATGCTTGTCCTCGATGCTTTGTCGGTTTTCCCATGAACGAGTACTTCATCACTACTCGGTCCCTCGCCAAGCTTTTTGGTTACTCTTCTGATGCATCTTCTCATCGAATGATCATCCATATATTTTTGCTATGTTTGAAAATAAATTTTCGGTCCAAGCACACACATACGCAAACGCACTCTTCGCCCTTTTCCGAGACGTTTCTCTCTCTCTCCGCGTGGTCGAAAAGCGATTTGCCCTTTGAATGTACTCTTTTTTTTTCGAGTGAAACACCACCGCACACATTTATACACTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>295 184 141 118 93 62 39 34 34</canonical_bands>
                <polymorphic_bands>295 184 141 118 96 93 39 34</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>499 334 167</canonical_bands>
                <polymorphic_bands>666 334</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>302 299 205 152 42</canonical_bands>
                <polymorphic_bands>302 299 247 152</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>499 334 167</canonical_bands>
                <polymorphic_bands>666 334</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCGGTTTGTTTTTAATTTTTAG</pcr_primer_p1>
		<pcr_primer_p2>AATACGTGTTTTGAACAAGAGC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACCGGTTTGTTTTTAATTTTTAGAATAAGAAAACTAGAAAATGTTTATCTAGCTTTTGGTGGACTATATTTGATGAGCTGTAAAAAGACAAGTTTCGATTTATGGACTGTATTCTTGAGTAGGTCATTTTTCCCTATAACTTTTCTTCTTATATTCTCGATTCAGACGTTTCCTTACAGTACTACGTTCATCGAACTAGGTCAATTGAATTCACATGTCCTTTGAGCTCTTGTTCAAAACACGTATT</canonical_amplicon>
		<polymorphic_amplicon>ACCGGTTTGTTTTTAATTTTTAGAATAAGAAAACTAGAAAATGTTTATCTAGCTTTTGGTGGACTATATTTGATGAGCTGTAAAAAGACAAGTTTCGATTTATGGACTGTATTCTTGAGTAGGTCATTTTTCCCTATAACTTTTCTTCTTATATTCTCGRTTCAGACGTTTCCTTACAGTACTACGTTCATCGAACTAGGTCAATTGAATTCACATGTCCTTTGAGCTCTTGTTCAAAACACGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb390</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1693408</contig_pos>
        <strand>+</strand>
        <context>TTTCTTCTTA[C/T]ATTCTCGRTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGGACTGTATTCTTGAGTAGGTCATTTTTCCCTATAACTTTTCTTCTTA</left_flank>
        <right_flank>ATTCTCGATTCAGACGTTTCCTTACAGTACTACGTTCATCGAACTAGGTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCTTTTGGGGGTTGAACATACAAGCAAAGAAGGAGCACGGGAGCTCTGAAAGGAAGAAAGAGCTAAAAGCTGAAAATACTGGGCGGCGGTTGTTGTTGACAATTTCAGTGTGTGTTTGTTTTTGTACTCATTTTTACGTTTAGCGGGAGAAGGAGGTCTAAAGAGCTCCACTAGCCAGTTTTTCTATTTTTTGTGTGTCCATTACTAGCTTGATGACTTTTGTATGCACTAACTGGAACATGAAATACCAGTTTTTTAGAGACCATATTTTTTAGAAAATAGTTTAAGAGGAACGTTCCTCGAGGTTCTTGAGCTTGATTAAATTTACCTAATGCTTTTTTCCGGGACCGGTTTGTTTTTAATTTTTAGAATAAGAAAACTAGAAAATGTTTATCTAGCTTTTGGTGGACTATATTTGATGAGCTGTAAAAAGACAAGTTTCGATTTATGGACTGTATTCTTGAGTAGGTCATTTTTCCCTATAACTTTTCTTCTTATATTCTCGATTCAGACGTTTCCTTACAGTACTACGTTCATCGAACTAGGTCAATTGAATTCACATGTCCTTTGAGCTCTTGTTCAAAACACGTATTCCTGTTCTTTATCTATGCCAGAGAACTGAACGAGTTGTCTCTGTCGTGTCGTCTGCCCTATTCAGAAGGACCTTCTCAGAATCGTAGCGTTCTTTTTCTTCTTCTGTTTTTGTCACGATGCTTGTCCTCGATGCTTTGTCGGTTTTCCCATGAACGAGTACTTCATCACTACTCGGTCCCTCGCCAAGCTTTTTGGTTACTCTTCTGATGCATCTTCTCATCGAATGATCATCCATATATTTTTGCTATGTTTGAAAATAAATTTTCGGTCCAAGCACACACATACGCAAACGCACTCTTCGCCCTTTTCCGAGACGTTTCTCTCTCTCTCCGCGTGGTCGAAAAGCGATTTGCCCTTTGAATGTACTCTTTTTTTTTCGAGTGAAACACCACCGCACACATTTA</canonical>
            <polymorphic>TTGCTTTTGGGGGTTGAACATACAAGCAAAGAAGGAGCACGGGAGCTCTGAAAGGAAGAAAGAGCTAAAAGCTGAAAATACTGGGCGGCGGTTGTTGTTGACAATTTCAGTGTGTGTTTGTTTTTGTACTCATTTTTACGTTTAGCGGGAGAAGGAGGTCTAAAGAGCTCCACTAGCCAGTTTTTCTATTTTTTGTGTGTCCATTACTAGCTTGATGACTTTTGTATGCACTAACTGGAACATGAAATACCAGTTTTTTAGAGACCATATTTTTTAGAAAATAGTTTAAGAGGAACGTTCCTCGAGGTTCTTGAGCTTGATTAAATTTACCTAATGCTTTTTTCCGGGACCGGTTTGTTTTTAATTTTTAGAATAAGAAAACTAGAAAATGTTTATCTAGCTTTTGGTGGACTATATTTGATGAGCTGTAAAAAGACAAGTTTCGATTTATGGACTGTATTCTTGAGTAGGTCATTTTTCCCTATAACTTTTCTTCTTAYATTCTCGATTCAGACGTTTCCTTACAGTACTACGTTCATCGAACTAGGTCAATTGAATTCACATGTCCTTTGAGCTCTTGTTCAAAACACGTATTCCTGTTCTTTATCTATGCCAGAGAACTGAACGAGTTGTCTCTGTCGTGTCGTCTGCCCTATTCAGAAGGACCTTCTCAGAATCGTAGCGTTCTTTTTCTTCTTCTGTTTTTGTCACGATGCTTGTCCTCGATGCTTTGTCGGTTTTCCCATGAACGAGTACTTCATCACTACTCGGTCCCTCGCCAAGCTTTTTGGTTACTCTTCTGATGCATCTTCTCATCGAATGATCATCCATATATTTTTGCTATGTTTGAAAATAAATTTTCGGTCCAAGCACACACATACGCAAACGCACTCTTCGCCCTTTTCCGAGACGTTTCTCTCTCTCTCCGCGTGGTCGAAAAGCGATTTGCCCTTTGAATGTACTCTTTTTTTTTCGAGTGAAACACCACCGCACACATTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCGGTTTGTTTTTAATTTTTAG</pcr_primer_p1>
		<pcr_primer_p2>AATACGTGTTTTGAACAAGAGC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACCGGTTTGTTTTTAATTTTTAGAATAAGAAAACTAGAAAATGTTTATCTAGCTTTTGGTGGACTATATTTGATGAGCTGTAAAAAGACAAGTTTCGATTTATGGACTGTATTCTTGAGTAGGTCATTTTTCCCTATAACTTTTCTTCTTATATTCTCGATTCAGACGTTTCCTTACAGTACTACGTTCATCGAACTAGGTCAATTGAATTCACATGTCCTTTGAGCTCTTGTTCAAAACACGTATT</canonical_amplicon>
		<polymorphic_amplicon>ACCGGTTTGTTTTTAATTTTTAGAATAAGAAAACTAGAAAATGTTTATCTAGCTTTTGGTGGACTATATTTGATGAGCTGTAAAAAGACAAGTTTCGATTTATGGACTGTATTCTTGAGTAGGTCATTTTTCCCTATAACTTTTCTTCTTAYATTCTCGATTCAGACGTTTCCTTACAGTACTACGTTCATCGAACTAGGTCAATTGAATTCACATGTCCTTTGAGCTCTTGTTCAAAACACGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb391</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1693256</contig_pos>
        <strand>+</strand>
        <context>TTTTTTCCGG[A/G]ACCGGTTTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCTCGAGGTTCTTGAGCTTGATTAAATTTACCTAATGCTTTTTTCCGG</left_flank>
        <right_flank>ACCGGTTTGTTTTTAATTTTTAGAATAAGAAAACTAGAAAATGTTTATCT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGCAAAAGTGCAACATCGCTCATCAATGTGTCCTCAACATCATTAAATTGGATCTATTCGAAAATCTATCGACACCTCCAAGACGTTGAAAAAAAGAGGCCACGAATTGTTTATAGAGAAAAGAGCCTGGGAAAGAAGCTAGAATGTTTATTTGCTTTTGGGGGTTGAACATACAAGCAAAGAAGGAGCACGGGAGCTCTGAAAGGAAGAAAGAGCTAAAAGCTGAAAATACTGGGCGGCGGTTGTTGTTGACAATTTCAGTGTGTGTTTGTTTTTGTACTCATTTTTACGTTTAGCGGGAGAAGGAGGTCTAAAGAGCTCCACTAGCCAGTTTTTCTATTTTTTGTGTGTCCATTACTAGCTTGATGACTTTTGTATGCACTAACTGGAACATGAAATACCAGTTTTTTAGAGACCATATTTTTTAGAAAATAGTTTAAGAGGAACGTTCCTCGAGGTTCTTGAGCTTGATTAAATTTACCTAATGCTTTTTTCCGGGACCGGTTTGTTTTTAATTTTTAGAATAAGAAAACTAGAAAATGTTTATCTAGCTTTTGGTGGACTATATTTGATGAGCTGTAAAAAGACAAGTTTCGATTTATGGACTGTATTCTTGAGTAGGTCATTTTTCCCTATAACTTTTCTTCTTATATTCTCGATTCAGACGTTTCCTTACAGTACTACGTTCATCGAACTAGGTCAATTGAATTCACATGTCCTTTGAGCTCTTGTTCAAAACACGTATTCCTGTTCTTTATCTATGCCAGAGAACTGAACGAGTTGTCTCTGTCGTGTCGTCTGCCCTATTCAGAAGGACCTTCTCAGAATCGTAGCGTTCTTTTTCTTCTTCTGTTTTTGTCACGATGCTTGTCCTCGATGCTTTGTCGGTTTTCCCATGAACGAGTACTTCATCACTACTCGGTCCCTCGCCAAGCTTTTTGGTTACTCTTCTGATGCATCTTCTCATCGAATGATCATCCATATATTTTTGCTATGTTT</canonical>
            <polymorphic>ACGCAAAAGTGCAACATCGCTCATCAATGTGTCCTCAACATCATTAAATTGGATCTATTCGAAAATCTATCGACACCTCCAAGACGTTGAAAAAAAGAGGCCACGAATTGTTTATAGAGAAAAGAGCCTGGGAAAGAAGCTAGAATGTTTATTTGCTTTTGGGGGTTGAACATACAAGCAAAGAAGGAGCACGGGAGCTCTGAAAGGAAGAAAGAGCTAAAAGCTGAAAATACTGGGCGGCGGTTGTTGTTGACAATTTCAGTGTGTGTTTGTTTTTGTACTCATTTTTACGTTTAGCGGGAGAAGGAGGTCTAAAGAGCTCCACTAGCCAGTTTTTCTATTTTTTGTGTGTCCATTACTAGCTTGATGACTTTTGTATGCACTAACTGGAACATGAAATACCAGTTTTTTAGAGACCATATTTTTTAGAAAATAGTTTAAGAGGAACGTTCCTCGAGGTTCTTGAGCTTGATTAAATTTACCTAATGCTTTTTTCCGGRACCGGTTTGTTTTTAATTTTTAGAATAAGAAAACTAGAAAATGTTTATCTAGCTTTTGGTGGACTATATTTGATGAGCTGTAAAAAGACAAGTTTCGATTTATGGACTGTATTCTTGAGTAGGTCATTTTTCCCTATAACTTTTCTTCTTATATTCTCGATTCAGACGTTTCCTTACAGTACTACGTTCATCGAACTAGGTCAATTGAATTCACATGTCCTTTGAGCTCTTGTTCAAAACACGTATTCCTGTTCTTTATCTATGCCAGAGAACTGAACGAGTTGTCTCTGTCGTGTCGTCTGCCCTATTCAGAAGGACCTTCTCAGAATCGTAGCGTTCTTTTTCTTCTTCTGTTTTTGTCACGATGCTTGTCCTCGATGCTTTGTCGGTTTTCCCATGAACGAGTACTTCATCACTACTCGGTCCCTCGCCAAGCTTTTTGGTTACTCTTCTGATGCATCTTCTCATCGAATGATCATCCATATATTTTTGCTATGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>499 316 107 78</canonical_bands>
                <polymorphic_bands>815 107 78</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>499 316 107 78</canonical_bands>
                <polymorphic_bands>815 107 78</polymorphic_bands>
            </assay>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>503 369 128</canonical_bands>
                <polymorphic_bands>872 128</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCATTACTAGCTTGATGACTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATCGAAACTTGTCTTTTTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCATTACTAGCTTGATGACTTTTGTATGCACTAACTGGAACATGAAATACCAGTTTTTTAGAGACCATATTTTTTAGAAAATAGTTTAAGAGGAACGTTCCTCGAGGTTCTTGAGCTTGATTAAATTTACCTAATGCTTTTTTCCGGGACCGGTTTGTTTTTAATTTTTAGAATAAGAAAACTAGAAAATGTTTATCTAGCTTTTGGTGGACTATATTTGATGAGCTGTAAAAAGACAAGTTTCGATTT</canonical_amplicon>
		<polymorphic_amplicon>TCCATTACTAGCTTGATGACTTTTGTATGCACTAACTGGAACATGAAATACCAGTTTTTTAGAGACCATATTTTTTAGAAAATAGTTTAAGAGGAACGTTCCTCGAGGTTCTTGAGCTTGATTAAATTTACCTAATGCTTTTTTCCGGRACCGGTTTGTTTTTAATTTTTAGAATAAGAAAACTAGAAAATGTTTATCTAGCTTTTGGTGGACTATATTTGATGAGCTGTAAAAAGACAAGTTTCGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb392</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1702048</contig_pos>
        <strand>+</strand>
        <context>TTCCATCAAT[A/G]GAGACTGATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAACTTTTCGTAGCCAGAAACATGCCGAATTTCTAAATTTTCCATCAAT</left_flank>
        <right_flank>GAGACTGATCTGAATTTTGATTCATTTCGATCCTGTTCCCGTTCAAGTCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATCCGCAAAATGCCGTAGTTCTATGTTAAGATGTTATTTGTAGAAGATAAATTTGAAGTGAAAAACATAAAGCACAAATTTTTATAGATTATTATCTACCGGTATGAAGCTAAAATGGCGTAGGGTTTTATGAAAATGGGTTTTTTTTAAATCTGGAATCATTGAATTTTAGAGCGGATGTCCGCCTGTTTCAGACAAACTTTCAGCTGTTTTTCGACCTTTTTAGGTCATTTGAAGCAAATTTTTGACCTTTTTCGGTAAATTTCGGATGGTTTTCATCCAAATTTTTCCGTATTATTTGTTGAATAATCTCCAGAAATGTTGGTAGGAGCTTTTGTAGTAGCCTGTAAGAGCTCAAACGAGTCACCAGTAAAAAACTGTGTACATTAAACTTGTTCAGGTACTATTTTTTTTGAGTGCTGATCTTGAGTAAATAAAATGTTAAAAATAACTTTTCGTAGCCAGAAACATGCCGAATTTCTAAATTTTCCATCAATAGAGACTGATCTGAATTTTGATTCATTTCGATCCTGTTCCCGTTCAAGTCAGTTTTTGATCAACTGTCTGAACTGATGACCTGAAAATAGAAAACATGGGCTTATCATTGATTGATCACTGATTTTCAGCAACCGTACATATTGTCTTGTCTGGTGGTTCAGTACAAAAACATATCGGGAAGTGATCTTTATCAAATATGAAAACAAGAAATTGGAATTTTTAGTAAAATCGGTGAACTGTTTTCGTGTGTTGAATATTAATATTCAGAAATGTTGAAGCCCTTTTTTTGCTGGGAACTTTTTCTTTCGTGCTAATCAGAATAGTCAAAAACAAATTAGCTGAAAACTTGAACAAGTTGGAGAACAATGTTTTGGTTAAGGGGTTTTGACTTTTTTTGAGCTGAATAGAATAAAAAGAAACTAATAGTAAGCAAACCATCAATATCAATGAAAACATACCGTAAACACTCTAATAGAAGGCCACACTATACTAGGTCAATT</canonical>
            <polymorphic>GGATCCGCAAAATGCCGTAGTTCTATGTTAAGATGTTATTTGTAGAAGATAAATTTGAAGTGAAAAACATAAAGCACAAATTTTTATAGATTATTATCTACCGGTATGAAGCTAAAATGGCGTAGGGTTTTATGAAAATGGGTTTTTTTTAAATCTGGAATCATTGAATTTTAGAGCGGATGTCCGCCTGTTTCAGACAAACTTTCAGCTGTTTTTCGACCTTTTTAGGTCATTTGAAGCAAATTTTTGACCTTTTTCGGTAAATTTCGGATGGTTTTCATCCAAATTTTTCCGTATTATTTGTTGAATAATCTCCAGAAATGTTGGTAGGAGCTTTTGTAGTAGCCTGTAAGAGCTCAAACGAGTCACCAGTAAAAAACTGTGTACATTAAACTTGTTCAGGTACTATTTTTTTTGAGTGCTGATCTTGAGTAAATAAAATGTTAAAAATAACTTTTCGTAGCCAGAAACATGCCGAATTTCTAAATTTTCCATCAATRGAGACTGATCTGAATTTTGATTCATTTCGATCCTGTTCCCGTTCAAGTCAGTTTTTGATCAACTGTCTGAACTGATGACCTGAAAATAGAAAACATGGGCTTATCATTGATTGATCACTGATTTTCAGCAACCGTACATATTGTCTTGTCTGGTGGTTCAGTACAAAAACATATCGGGAAGTGATCTTTATCAAATATGAAAACAAGAAATTGGAATTTTTAGTAAAATCGGTGAACTGTTTTCGTGTGTTGAATATTAATATTCAGAAATGTTGAAGCCCTTTTTTTGCTGGGAACTTTTTCTTTCGTGCTAATCAGAATAGTCAAAAACAAATTAGCTGAAAACTTGAACAAGTTGGAGAACAATGTTTTGGTTAAGGGGTTTTGACTTTTTTTGAGCTGAATAGAATAAAAAGAAACTAATAGTAAGCAAACCATCAATATCAATGAAAACATACCGTAAACACTCTAATAGAAGGCCACACTATACTAGGTCAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGGTAGGAGCTTTTGTAGTAG</pcr_primer_p1>
		<pcr_primer_p2>AGTTCAGACAGTTGATCAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTTGGTAGGAGCTTTTGTAGTAGCCTGTAAGAGCTCAAACGAGTCACCAGTAAAAAACTGTGTACATTAAACTTGTTCAGGTACTATTTTTTTTGAGTGCTGATCTTGAGTAAATAAAATGTTAAAAATAACTTTTCGTAGCCAGAAACATGCCGAATTTCTAAATTTTCCATCAATAGAGACTGATCTGAATTTTGATTCATTTCGATCCTGTTCCCGTTCAAGTCAGTTTTTGATCAACTGTCTGAACT</canonical_amplicon>
		<polymorphic_amplicon>GTTGGTAGGAGCTTTTGTAGTAGCCTGTAAGAGCTCAAACGAGTCACCAGTAAAAAACTGTGTACATTAAACTTGTTCAGGTACTATTTTTTTTGAGTGCTGATCTTGAGTAAATAAAATGTTAAAAATAACTTTTCGTAGCCAGAAACATGCCGAATTTCTAAATTTTCCATCAATRGAGACTGATCTGAATTTTGATTCATTTCGATCCTGTTCCCGTTCAAGTCAGTTTTTGATCAACTGTCTGAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb393</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>14727</contig_pos>
        <strand></strand>
        <context>GAATTGTTTC[A/G]ACAAAACCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGTTGTCGAAAAAGAGGATTCCTATCACAACTTCTCATTGAATTGTTTC</left_flank>
        <right_flank>ACAAAACCCAAATTTCTAAAATTATTTATGTTCATTCATTCTCATTTGTC</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCCGTTTTGTGCTAGTCCAGCGACGGGACATTTTTGGCACCAACATCTAAGAAAAAGCGAAATTTCACTTCGGGTACTTCCCCTGTCAGTTTCAATTTTTGCTGTTTCAAAAAATATGCAAATTTGATGGATTTTTTTCCTCCATTGCTTCTACGTTTCTTCTATGCACAAATTAAAATTTCTCTCAATTTTTCGGGGCCAATTACTGTCAACACTCTAATAGAACACCACCCGGACCGTCGACTTTGAGTCTATATATCTCACTTCTTTCGAAAGACATCAAAAAGTTGTCAACTAATAAAATGTTTATCATAATATCAGCAACATTTGTTTAGGTAACCACTTTTAGATATCTCTCACAGAAAATGAGACACATGGTCTCAAATTTGACGATTCGGGTGGCGTTCCATTAGAGTGTTCACGGTAAATCCATTTTTTTGAATTAAAGAGTTGTCGAAAAAGAGGATTCCTATCACAACTTCTCATTGAATTGTTTCAACAAAACCCAAATTTCTAAAATTATTTATGTTCATTCATTCTCATTTGTCCTCCTCCAACTTGAAATTTTTCATTCTCTGTTTTCTCAACATTCTTGAGAATTCAATTTTACCTCAACTGGATAGATTCTAGATTTCCTACCTTCGGTGTTTTGGATAAAAAAAATTCACTGGAAAATTGGAAAATTACATAAAATTGCCAAATTGGTGTGTTGTTGTTGTGTGGAGCTTTGCATTTGAACGTTTTCTTTCTCTTCAGAGAAAAAAAAACTAAATTATTCATGTCACATGTCAACGGACGGGTAGCAGTTTTTTCCTAATATTTATAAAGATTTTTGGGTAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTTCGAGAATATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACAATTGTGCAAGAAAGAAAAAATTGCATACTTTGATAGTTTTGCGAAAAAAA</canonical>
            <polymorphic>TATCCGTTTTGTGCTAGTCCAGCGACGGGACATTTTTGGCACCAACATCTAAGAAAAAGCGAAATTTCACTTCGGGTACTTCCCCTGTCAGTTTCAATTTTTGCTGTTTCAAAAAATATGCAAATTTGATGGATTTTTTTCCTCCATTGCTTCTACGTTTCTTCTATGCACAAATTAAAATTTCTCTCAATTTTTCGGGGCCAATTACTGTCAACACTCTAATAGAACACCACCCGGACCGTCGACTTTGAGTCTATATATCTCACTTCTTTCGAAAGACATCAAAAAGTTGTCAACTAATAAAATGTTTATCATAATATCAGCAACATTTGTTTAGGTAACCACTTTTAGATATCTCTCACAGAAAATGAGACACATGGTCTCAAATTTGACGATTCGGGTGGCGTTCCATTAGAGTGTTCACGGTAAATCCATTTTTTTGAATTAAAGAGTTGTCGAAAAAGAGGATTCCTATCACAACTTCTCATTGAATTGTTTCRACAAAACCCAAATTTCTAAAATTATTTATGTTCATTCATTCTCATTTGTCCTCCTCCAACTTGAAATTTTTCATTCTCTGTTTTCTCAACATTCTTGAGAATTCAATTTTACCTCAACTGGATAGATTCTAGATTTCCTACCTTCGGTGTTTTGGATAAAAAAAATTCACTGGAAAATTGGAAAATTACATAAAATTGCCAAATTGGTGTGTTGTTGTTGTGTGGAGCTTTGCATTTGAACGTTTTCTTTCTCTTCAGAGAAAAAAAAACTAAATTATTCATGTCACATGTCAACGGACGGGTAGCAGTTTTTTCCTAATATTTATAAAGATTTTTGGGTAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTTCGAGAATATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACAATTGTGCAAGAAAGAAAAAATTGCATACTTTGATAGTTTTGCGAAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTAAAGAGTTGTCGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>ATGTAATTTTCCAATTTTCCAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATTAAAGAGTTGTCGAAAAAGAGGATTCCTATCACAACTTCTCATTGAATTGTTTCAACAAAACCCAAATTTCTAAAATTATTTATGTTCATTCATTCTCATTTGTCCTCCTCCAACTTGAAATTTTTCATTCTCTGTTTTCTCAACATTCTTGAGAATTCAATTTTACCTCAACTGGATAGATTCTAGATTTCCTACCTTCGGTGTTTTGGATAAAAAAAATTCACTGGAAAATTGGAAAATTACAT</canonical_amplicon>
		<polymorphic_amplicon>GAATTAAAGAGTTGTCGAAAAAGAGGATTCCTATCACAACTTCTCATTGAATTGTTTCRACAAAACCCAAATTTCTAAAATTATTTATGTTCATTCATTCTCATTTGTCCTCCTCCAACTTGAAATTTTTCATTCTCTGTTTTCTCAACATTCTTGAGAATTCAATTTTACCTCAACTGGATAGATTCTAGATTTCCTACCTTCGGTGTTTTGGATAAAAAAAATTCACTGGAAAATTGGAAAATTACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb394</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>14739</contig_pos>
        <strand></strand>
        <context>CAAAACCCAA[A/G]TTTCTAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGAGGATTCCTATCACAACTTCTCATTGAATTGTTTCAACAAAACCCAA</left_flank>
        <right_flank>TTTCTAAAATTATTTATGTTCATTCATTCTCATTTGTCCTCCTCCAACTT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTAGTCCAGCGACGGGACATTTTTGGCACCAACATCTAAGAAAAAGCGAAATTTCACTTCGGGTACTTCCCCTGTCAGTTTCAATTTTTGCTGTTTCAAAAAATATGCAAATTTGATGGATTTTTTTCCTCCATTGCTTCTACGTTTCTTCTATGCACAAATTAAAATTTCTCTCAATTTTTCGGGGCCAATTACTGTCAACACTCTAATAGAACACCACCCGGACCGTCGACTTTGAGTCTATATATCTCACTTCTTTCGAAAGACATCAAAAAGTTGTCAACTAATAAAATGTTTATCATAATATCAGCAACATTTGTTTAGGTAACCACTTTTAGATATCTCTCACAGAAAATGAGACACATGGTCTCAAATTTGACGATTCGGGTGGCGTTCCATTAGAGTGTTCACGGTAAATCCATTTTTTTGAATTAAAGAGTTGTCGAAAAAGAGGATTCCTATCACAACTTCTCATTGAATTGTTTCAACAAAACCCAAATTTCTAAAATTATTTATGTTCATTCATTCTCATTTGTCCTCCTCCAACTTGAAATTTTTCATTCTCTGTTTTCTCAACATTCTTGAGAATTCAATTTTACCTCAACTGGATAGATTCTAGATTTCCTACCTTCGGTGTTTTGGATAAAAAAAATTCACTGGAAAATTGGAAAATTACATAAAATTGCCAAATTGGTGTGTTGTTGTTGTGTGGAGCTTTGCATTTGAACGTTTTCTTTCTCTTCAGAGAAAAAAAAACTAAATTATTCATGTCACATGTCAACGGACGGGTAGCAGTTTTTTCCTAATATTTATAAAGATTTTTGGGTAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTTCGAGAATATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACAATTGTGCAAGAAAGAAAAAATTGCATACTTTGATAGTTTTGCGAAAAAAAACAATTCCTAAT</canonical>
            <polymorphic>GCTAGTCCAGCGACGGGACATTTTTGGCACCAACATCTAAGAAAAAGCGAAATTTCACTTCGGGTACTTCCCCTGTCAGTTTCAATTTTTGCTGTTTCAAAAAATATGCAAATTTGATGGATTTTTTTCCTCCATTGCTTCTACGTTTCTTCTATGCACAAATTAAAATTTCTCTCAATTTTTCGGGGCCAATTACTGTCAACACTCTAATAGAACACCACCCGGACCGTCGACTTTGAGTCTATATATCTCACTTCTTTCGAAAGACATCAAAAAGTTGTCAACTAATAAAATGTTTATCATAATATCAGCAACATTTGTTTAGGTAACCACTTTTAGATATCTCTCACAGAAAATGAGACACATGGTCTCAAATTTGACGATTCGGGTGGCGTTCCATTAGAGTGTTCACGGTAAATCCATTTTTTTGAATTAAAGAGTTGTCGAAAAAGAGGATTCCTATCACAACTTCTCATTGAATTGTTTCAACAAAACCCAARTTTCTAAAATTATTTATGTTCATTCATTCTCATTTGTCCTCCTCCAACTTGAAATTTTTCATTCTCTGTTTTCTCAACATTCTTGAGAATTCAATTTTACCTCAACTGGATAGATTCTAGATTTCCTACCTTCGGTGTTTTGGATAAAAAAAATTCACTGGAAAATTGGAAAATTACATAAAATTGCCAAATTGGTGTGTTGTTGTTGTGTGGAGCTTTGCATTTGAACGTTTTCTTTCTCTTCAGAGAAAAAAAAACTAAATTATTCATGTCACATGTCAACGGACGGGTAGCAGTTTTTTCCTAATATTTATAAAGATTTTTGGGTAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTTCGAGAATATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACAATTGTGCAAGAAAGAAAAAATTGCATACTTTGATAGTTTTGCGAAAAAAAACAATTCCTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>222 207 127 125 64 60 56 54 50 35</canonical_bands>
                <polymorphic_bands>222 207 179 127 64 60 56 50 35</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>183 71 68 59 57 54 50 50 48 45 35 34 33 29 27 20 19 16 14 12 10 10 10 10 9 8 8 6 5</canonical_bands>
                <polymorphic_bands>183 71 68 59 57 54 50 50 48 45 35 34 33 29 29 27 19 16 14 12 10 10 10 10 8 8 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTAAAGAGTTGTCGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>ATGTAATTTTCCAATTTTCCAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATTAAAGAGTTGTCGAAAAAGAGGATTCCTATCACAACTTCTCATTGAATTGTTTCAACAAAACCCAAATTTCTAAAATTATTTATGTTCATTCATTCTCATTTGTCCTCCTCCAACTTGAAATTTTTCATTCTCTGTTTTCTCAACATTCTTGAGAATTCAATTTTACCTCAACTGGATAGATTCTAGATTTCCTACCTTCGGTGTTTTGGATAAAAAAAATTCACTGGAAAATTGGAAAATTACAT</canonical_amplicon>
		<polymorphic_amplicon>GAATTAAAGAGTTGTCGAAAAAGAGGATTCCTATCACAACTTCTCATTGAATTGTTTCAACAAAACCCAARTTTCTAAAATTATTTATGTTCATTCATTCTCATTTGTCCTCCTCCAACTTGAAATTTTTCATTCTCTGTTTTCTCAACATTCTTGAGAATTCAATTTTACCTCAACTGGATAGATTCTAGATTTCCTACCTTCGGTGTTTTGGATAAAAAAAATTCACTGGAAAATTGGAAAATTACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb395</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>14800</contig_pos>
        <strand></strand>
        <context>GAAATTTTTC[A/G]TTCTCTGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTTATGTTCATTCATTCTCATTTGTCCTCCTCCAACTTGAAATTTTTC</left_flank>
        <right_flank>TTCTCTGTTTTCTCAACATTCTTGAGAATTCAATTTTACCTCAACTGGAT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGTACTTCCCCTGTCAGTTTCAATTTTTGCTGTTTCAAAAAATATGCAAATTTGATGGATTTTTTTCCTCCATTGCTTCTACGTTTCTTCTATGCACAAATTAAAATTTCTCTCAATTTTTCGGGGCCAATTACTGTCAACACTCTAATAGAACACCACCCGGACCGTCGACTTTGAGTCTATATATCTCACTTCTTTCGAAAGACATCAAAAAGTTGTCAACTAATAAAATGTTTATCATAATATCAGCAACATTTGTTTAGGTAACCACTTTTAGATATCTCTCACAGAAAATGAGACACATGGTCTCAAATTTGACGATTCGGGTGGCGTTCCATTAGAGTGTTCACGGTAAATCCATTTTTTTGAATTAAAGAGTTGTCGAAAAAGAGGATTCCTATCACAACTTCTCATTGAATTGTTTCAACAAAACCCAAATTTCTAAAATTATTTATGTTCATTCATTCTCATTTGTCCTCCTCCAACTTGAAATTTTTCATTCTCTGTTTTCTCAACATTCTTGAGAATTCAATTTTACCTCAACTGGATAGATTCTAGATTTCCTACCTTCGGTGTTTTGGATAAAAAAAATTCACTGGAAAATTGGAAAATTACATAAAATTGCCAAATTGGTGTGTTGTTGTTGTGTGGAGCTTTGCATTTGAACGTTTTCTTTCTCTTCAGAGAAAAAAAAACTAAATTATTCATGTCACATGTCAACGGACGGGTAGCAGTTTTTTCCTAATATTTATAAAGATTTTTGGGTAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTTCGAGAATATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACAATTGTGCAAGAAAGAAAAAATTGCATACTTTGATAGTTTTGCGAAAAAAAACAATTCCTAATACTTTTGTTTGATTCAAAAAAAAAATTCCACTGTTTCAAATTACTTTTTAACTTTTGAACT</canonical>
            <polymorphic>GGGTACTTCCCCTGTCAGTTTCAATTTTTGCTGTTTCAAAAAATATGCAAATTTGATGGATTTTTTTCCTCCATTGCTTCTACGTTTCTTCTATGCACAAATTAAAATTTCTCTCAATTTTTCGGGGCCAATTACTGTCAACACTCTAATAGAACACCACCCGGACCGTCGACTTTGAGTCTATATATCTCACTTCTTTCGAAAGACATCAAAAAGTTGTCAACTAATAAAATGTTTATCATAATATCAGCAACATTTGTTTAGGTAACCACTTTTAGATATCTCTCACAGAAAATGAGACACATGGTCTCAAATTTGACGATTCGGGTGGCGTTCCATTAGAGTGTTCACGGTAAATCCATTTTTTTGAATTAAAGAGTTGTCGAAAAAGAGGATTCCTATCACAACTTCTCATTGAATTGTTTCAACAAAACCCAAATTTCTAAAATTATTTATGTTCATTCATTCTCATTTGTCCTCCTCCAACTTGAAATTTTTCRTTCTCTGTTTTCTCAACATTCTTGAGAATTCAATTTTACCTCAACTGGATAGATTCTAGATTTCCTACCTTCGGTGTTTTGGATAAAAAAAATTCACTGGAAAATTGGAAAATTACATAAAATTGCCAAATTGGTGTGTTGTTGTTGTGTGGAGCTTTGCATTTGAACGTTTTCTTTCTCTTCAGAGAAAAAAAAACTAAATTATTCATGTCACATGTCAACGGACGGGTAGCAGTTTTTTCCTAATATTTATAAAGATTTTTGGGTAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTTCGAGAATATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACAATTGTGCAAGAAAGAAAAAATTGCATACTTTGATAGTTTTGCGAAAAAAAACAATTCCTAATACTTTTGTTTGATTCAAAAAAAAAATTCCACTGTTTCAAATTACTTTTTAACTTTTGAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTAAAGAGTTGTCGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>ATGTAATTTTCCAATTTTCCAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATTAAAGAGTTGTCGAAAAAGAGGATTCCTATCACAACTTCTCATTGAATTGTTTCAACAAAACCCAAATTTCTAAAATTATTTATGTTCATTCATTCTCATTTGTCCTCCTCCAACTTGAAATTTTTCATTCTCTGTTTTCTCAACATTCTTGAGAATTCAATTTTACCTCAACTGGATAGATTCTAGATTTCCTACCTTCGGTGTTTTGGATAAAAAAAATTCACTGGAAAATTGGAAAATTACAT</canonical_amplicon>
		<polymorphic_amplicon>GAATTAAAGAGTTGTCGAAAAAGAGGATTCCTATCACAACTTCTCATTGAATTGTTTCAACAAAACCCAAATTTCTAAAATTATTTATGTTCATTCATTCTCATTTGTCCTCCTCCAACTTGAAATTTTTCRTTCTCTGTTTTCTCAACATTCTTGAGAATTCAATTTTACCTCAACTGGATAGATTCTAGATTTCCTACCTTCGGTGTTTTGGATAAAAAAAATTCACTGGAAAATTGGAAAATTACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb396</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>14870</contig_pos>
        <strand></strand>
        <context>ATTTCCTACC[T/C]TCGGTGTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCTTGAGAATTCAATTTTACCTCAACTGGATAGATTCTAGATTTCCTACC</left_flank>
        <right_flank>TCGGTGTTTTGGATAAAAAAAATTCACTGGAAAATTGGAAAATTACATAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATTGCTTCTACGTTTCTTCTATGCACAAATTAAAATTTCTCTCAATTTTTCGGGGCCAATTACTGTCAACACTCTAATAGAACACCACCCGGACCGTCGACTTTGAGTCTATATATCTCACTTCTTTCGAAAGACATCAAAAAGTTGTCAACTAATAAAATGTTTATCATAATATCAGCAACATTTGTTTAGGTAACCACTTTTAGATATCTCTCACAGAAAATGAGACACATGGTCTCAAATTTGACGATTCGGGTGGCGTTCCATTAGAGTGTTCACGGTAAATCCATTTTTTTGAATTAAAGAGTTGTCGAAAAAGAGGATTCCTATCACAACTTCTCATTGAATTGTTTCAACAAAACCCAAATTTCTAAAATTATTTATGTTCATTCATTCTCATTTGTCCTCCTCCAACTTGAAATTTTTCATTCTCTGTTTTCTCAACATTCTTGAGAATTCAATTTTACCTCAACTGGATAGATTCTAGATTTCCTACCTTCGGTGTTTTGGATAAAAAAAATTCACTGGAAAATTGGAAAATTACATAAAATTGCCAAATTGGTGTGTTGTTGTTGTGTGGAGCTTTGCATTTGAACGTTTTCTTTCTCTTCAGAGAAAAAAAAACTAAATTATTCATGTCACATGTCAACGGACGGGTAGCAGTTTTTTCCTAATATTTATAAAGATTTTTGGGTAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTTCGAGAATATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACAATTGTGCAAGAAAGAAAAAATTGCATACTTTGATAGTTTTGCGAAAAAAAACAATTCCTAATACTTTTGTTTGATTCAAAAAAAAAATTCCACTGTTTCAAATTACTTTTTAACTTTTGAACTATTTTTCTTTTCTCGGCCGTCGGCGCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGA</canonical>
            <polymorphic>CCATTGCTTCTACGTTTCTTCTATGCACAAATTAAAATTTCTCTCAATTTTTCGGGGCCAATTACTGTCAACACTCTAATAGAACACCACCCGGACCGTCGACTTTGAGTCTATATATCTCACTTCTTTCGAAAGACATCAAAAAGTTGTCAACTAATAAAATGTTTATCATAATATCAGCAACATTTGTTTAGGTAACCACTTTTAGATATCTCTCACAGAAAATGAGACACATGGTCTCAAATTTGACGATTCGGGTGGCGTTCCATTAGAGTGTTCACGGTAAATCCATTTTTTTGAATTAAAGAGTTGTCGAAAAAGAGGATTCCTATCACAACTTCTCATTGAATTGTTTCAACAAAACCCAAATTTCTAAAATTATTTATGTTCATTCATTCTCATTTGTCCTCCTCCAACTTGAAATTTTTCATTCTCTGTTTTCTCAACATTCTTGAGAATTCAATTTTACCTCAACTGGATAGATTCTAGATTTCCTACCYTCGGTGTTTTGGATAAAAAAAATTCACTGGAAAATTGGAAAATTACATAAAATTGCCAAATTGGTGTGTTGTTGTTGTGTGGAGCTTTGCATTTGAACGTTTTCTTTCTCTTCAGAGAAAAAAAAACTAAATTATTCATGTCACATGTCAACGGACGGGTAGCAGTTTTTTCCTAATATTTATAAAGATTTTTGGGTAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTTCGAGAATATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACAATTGTGCAAGAAAGAAAAAATTGCATACTTTGATAGTTTTGCGAAAAAAAACAATTCCTAATACTTTTGTTTGATTCAAAAAAAAAATTCCACTGTTTCAAATTACTTTTTAACTTTTGAACTATTTTTCTTTTCTCGGCCGTCGGCGCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAGGATTCCTATCACAACT</pcr_primer_p1>
		<pcr_primer_p2>ACCAATTTGGCAATTTTATGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAGGATTCCTATCACAACTTCTCATTGAATTGTTTCAACAAAACCCAAATTTCTAAAATTATTTATGTTCATTCATTCTCATTTGTCCTCCTCCAACTTGAAATTTTTCATTCTCTGTTTTCTCAACATTCTTGAGAATTCAATTTTACCTCAACTGGATAGATTCTAGATTTCCTACCTTCGGTGTTTTGGATAAAAAAAATTCACTGGAAAATTGGAAAATTACATAAAATTGCCAAATTGGT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAGGATTCCTATCACAACTTCTCATTGAATTGTTTCAACAAAACCCAAATTTCTAAAATTATTTATGTTCATTCATTCTCATTTGTCCTCCTCCAACTTGAAATTTTTCATTCTCTGTTTTCTCAACATTCTTGAGAATTCAATTTTACCTCAACTGGATAGATTCTAGATTTCCTACCYTCGGTGTTTTGGATAAAAAAAATTCACTGGAAAATTGGAAAATTACATAAAATTGCCAAATTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb397</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>14969</contig_pos>
        <strand></strand>
        <context>GCATTTGAAC[G/T]TTTTCTTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAATTGCCAAATTGGTGTGTTGTTGTTGTGTGGAGCTTTGCATTTGAAC</left_flank>
        <right_flank>TTTTCTTTCTCTTCAGAGAAAAAAAAACTAAATTATTCATGTCACATGTC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGACTTTGAGTCTATATATCTCACTTCTTTCGAAAGACATCAAAAAGTTGTCAACTAATAAAATGTTTATCATAATATCAGCAACATTTGTTTAGGTAACCACTTTTAGATATCTCTCACAGAAAATGAGACACATGGTCTCAAATTTGACGATTCGGGTGGCGTTCCATTAGAGTGTTCACGGTAAATCCATTTTTTTGAATTAAAGAGTTGTCGAAAAAGAGGATTCCTATCACAACTTCTCATTGAATTGTTTCAACAAAACCCAAATTTCTAAAATTATTTATGTTCATTCATTCTCATTTGTCCTCCTCCAACTTGAAATTTTTCATTCTCTGTTTTCTCAACATTCTTGAGAATTCAATTTTACCTCAACTGGATAGATTCTAGATTTCCTACCTTCGGTGTTTTGGATAAAAAAAATTCACTGGAAAATTGGAAAATTACATAAAATTGCCAAATTGGTGTGTTGTTGTTGTGTGGAGCTTTGCATTTGAACGTTTTCTTTCTCTTCAGAGAAAAAAAAACTAAATTATTCATGTCACATGTCAACGGACGGGTAGCAGTTTTTTCCTAATATTTATAAAGATTTTTGGGTAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTTCGAGAATATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACAATTGTGCAAGAAAGAAAAAATTGCATACTTTGATAGTTTTGCGAAAAAAAACAATTCCTAATACTTTTGTTTGATTCAAAAAAAAAATTCCACTGTTTCAAATTACTTTTTAACTTTTGAACTATTTTTCTTTTCTCGGCCGTCGGCGCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACATTATTCTATGTATCAGCTAAGACTTGTGGAAGGCTTGTCCTAGACTTGTGTGGCTTTGTGTGTTTTCATTCAAACCTGTTGTTCTGTTGTGATT</canonical>
            <polymorphic>CGACTTTGAGTCTATATATCTCACTTCTTTCGAAAGACATCAAAAAGTTGTCAACTAATAAAATGTTTATCATAATATCAGCAACATTTGTTTAGGTAACCACTTTTAGATATCTCTCACAGAAAATGAGACACATGGTCTCAAATTTGACGATTCGGGTGGCGTTCCATTAGAGTGTTCACGGTAAATCCATTTTTTTGAATTAAAGAGTTGTCGAAAAAGAGGATTCCTATCACAACTTCTCATTGAATTGTTTCAACAAAACCCAAATTTCTAAAATTATTTATGTTCATTCATTCTCATTTGTCCTCCTCCAACTTGAAATTTTTCATTCTCTGTTTTCTCAACATTCTTGAGAATTCAATTTTACCTCAACTGGATAGATTCTAGATTTCCTACCTTCGGTGTTTTGGATAAAAAAAATTCACTGGAAAATTGGAAAATTACATAAAATTGCCAAATTGGTGTGTTGTTGTTGTGTGGAGCTTTGCATTTGAACKTTTTCTTTCTCTTCAGAGAAAAAAAAACTAAATTATTCATGTCACATGTCAACGGACGGGTAGCAGTTTTTTCCTAATATTTATAAAGATTTTTGGGTAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTTCGAGAATATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACAATTGTGCAAGAAAGAAAAAATTGCATACTTTGATAGTTTTGCGAAAAAAAACAATTCCTAATACTTTTGTTTGATTCAAAAAAAAAATTCCACTGTTTCAAATTACTTTTTAACTTTTGAACTATTTTTCTTTTCTCGGCCGTCGGCGCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACATTATTCTATGTATCAGCTAAGACTTGTGGAAGGCTTGTCCTAGACTTGTGTGGCTTTGTGTGTTTTCATTCAAACCTGTTGTTCTGTTGTGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGGAAAATTGGAAAATTACATA</pcr_primer_p1>
		<pcr_primer_p2>AACCAAAATTTCTTGAAACAGTA</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>CTGGAAAATTGGAAAATTACATAAAATTGCCAAATTGGTGTGTTGTTGTTGTGTGGAGCTTTGCATTTGAACGTTTTCTTTCTCTTCAGAGAAAAAAAAACTAAATTATTCATGTCACATGTCAACGGACGGGTAGCAGTTTTTTCCTAATATTTATAAAGATTTTTGGGTAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTT</canonical_amplicon>
		<polymorphic_amplicon>CTGGAAAATTGGAAAATTACATAAAATTGCCAAATTGGTGTGTTGTTGTTGTGTGGAGCTTTGCATTTGAACKTTTTCTTTCTCTTCAGAGAAAAAAAAACTAAATTATTCATGTCACATGTCAACGGACGGGTAGCAGTTTTTTCCTAATATTTATAAAGATTTTTGGGTAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb398</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>15055</contig_pos>
        <strand></strand>
        <context>AATATTTATA[A/T]AGATTTKTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCATGTCACATGTCAACGGACGGGTAGCAGTTTTTTCCTAATATTTATA</left_flank>
        <right_flank>AGATTTTTGGGTAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGTTTAGGTAACCACTTTTAGATATCTCTCACAGAAAATGAGACACATGGTCTCAAATTTGACGATTCGGGTGGCGTTCCATTAGAGTGTTCACGGTAAATCCATTTTTTTGAATTAAAGAGTTGTCGAAAAAGAGGATTCCTATCACAACTTCTCATTGAATTGTTTCAACAAAACCCAAATTTCTAAAATTATTTATGTTCATTCATTCTCATTTGTCCTCCTCCAACTTGAAATTTTTCATTCTCTGTTTTCTCAACATTCTTGAGAATTCAATTTTACCTCAACTGGATAGATTCTAGATTTCCTACCTTCGGTGTTTTGGATAAAAAAAATTCACTGGAAAATTGGAAAATTACATAAAATTGCCAAATTGGTGTGTTGTTGTTGTGTGGAGCTTTGCATTTGAACGTTTTCTTTCTCTTCAGAGAAAAAAAAACTAAATTATTCATGTCACATGTCAACGGACGGGTAGCAGTTTTTTCCTAATATTTATAAAGATTTTTGGGTAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTTCGAGAATATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACAATTGTGCAAGAAAGAAAAAATTGCATACTTTGATAGTTTTGCGAAAAAAAACAATTCCTAATACTTTTGTTTGATTCAAAAAAAAAATTCCACTGTTTCAAATTACTTTTTAACTTTTGAACTATTTTTCTTTTCTCGGCCGTCGGCGCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACATTATTCTATGTATCAGCTAAGACTTGTGGAAGGCTTGTCCTAGACTTGTGTGGCTTTGTGTGTTTTCATTCAAACCTGTTGTTCTGTTGTGATTGTATTTGGAATTAGATATACTACAACATTTTATTAGAACACTACACAAAACGAATAATGAAAAAAAAATTAATTAAAATTACAAAA</canonical>
            <polymorphic>TTTGTTTAGGTAACCACTTTTAGATATCTCTCACAGAAAATGAGACACATGGTCTCAAATTTGACGATTCGGGTGGCGTTCCATTAGAGTGTTCACGGTAAATCCATTTTTTTGAATTAAAGAGTTGTCGAAAAAGAGGATTCCTATCACAACTTCTCATTGAATTGTTTCAACAAAACCCAAATTTCTAAAATTATTTATGTTCATTCATTCTCATTTGTCCTCCTCCAACTTGAAATTTTTCATTCTCTGTTTTCTCAACATTCTTGAGAATTCAATTTTACCTCAACTGGATAGATTCTAGATTTCCTACCTTCGGTGTTTTGGATAAAAAAAATTCACTGGAAAATTGGAAAATTACATAAAATTGCCAAATTGGTGTGTTGTTGTTGTGTGGAGCTTTGCATTTGAACGTTTTCTTTCTCTTCAGAGAAAAAAAAACTAAATTATTCATGTCACATGTCAACGGACGGGTAGCAGTTTTTTCCTAATATTTATAWAGATTTTTGGGTAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTTCGAGAATATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACAATTGTGCAAGAAAGAAAAAATTGCATACTTTGATAGTTTTGCGAAAAAAAACAATTCCTAATACTTTTGTTTGATTCAAAAAAAAAATTCCACTGTTTCAAATTACTTTTTAACTTTTGAACTATTTTTCTTTTCTCGGCCGTCGGCGCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACATTATTCTATGTATCAGCTAAGACTTGTGGAAGGCTTGTCCTAGACTTGTGTGGCTTTGTGTGTTTTCATTCAAACCTGTTGTTCTGTTGTGATTGTATTTGGAATTAGATATACTACAACATTTTATTAGAACACTACACAAAACGAATAATGAAAAAAAAATTAATTAAAATTACAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>497 463 40</canonical_bands>
                <polymorphic_bands>537 463</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTGGTGTGTTGTTGTTGT</pcr_primer_p1>
		<pcr_primer_p2>TGTGGTAAATTAAATGACATGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTGGTGTGTTGTTGTTGTGTGGAGCTTTGCATTTGAACGTTTTCTTTCTCTTCAGAGAAAAAAAAACTAAATTATTCATGTCACATGTCAACGGACGGGTAGCAGTTTTTTCCTAATATTTATAAAGATTTTTGGGTAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTTCGAGAATATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACA</canonical_amplicon>
		<polymorphic_amplicon>AAATTGGTGTGTTGTTGTTGTGTGGAGCTTTGCATTTGAACGTTTTCTTTCTCTTCAGAGAAAAAAAAACTAAATTATTCATGTCACATGTCAACGGACGGGTAGCAGTTTTTTCCTAATATTTATAWAGATTTTTGGGTAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTTCGAGAATATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb399</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>15091</contig_pos>
        <strand></strand>
        <context>TACGGTTCAT[T/A]ATAAAAATTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCCTAATATTTATAAAGATTTTTGGGTAATTTTTAAGCTTTACGGTTCAT</left_flank>
        <right_flank>ATAAAAATTACTGTTTCAAGAAATTTTGGTTCGAGAATATTCGTTCAACA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATGAGACACATGGTCTCAAATTTGACGATTCGGGTGGCGTTCCATTAGAGTGTTCACGGTAAATCCATTTTTTTGAATTAAAGAGTTGTCGAAAAAGAGGATTCCTATCACAACTTCTCATTGAATTGTTTCAACAAAACCCAAATTTCTAAAATTATTTATGTTCATTCATTCTCATTTGTCCTCCTCCAACTTGAAATTTTTCATTCTCTGTTTTCTCAACATTCTTGAGAATTCAATTTTACCTCAACTGGATAGATTCTAGATTTCCTACCTTCGGTGTTTTGGATAAAAAAAATTCACTGGAAAATTGGAAAATTACATAAAATTGCCAAATTGGTGTGTTGTTGTTGTGTGGAGCTTTGCATTTGAACGTTTTCTTTCTCTTCAGAGAAAAAAAAACTAAATTATTCATGTCACATGTCAACGGACGGGTAGCAGTTTTTTCCTAATATTTATAAAGATTTTTGGGTAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTTCGAGAATATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACAATTGTGCAAGAAAGAAAAAATTGCATACTTTGATAGTTTTGCGAAAAAAAACAATTCCTAATACTTTTGTTTGATTCAAAAAAAAAATTCCACTGTTTCAAATTACTTTTTAACTTTTGAACTATTTTTCTTTTCTCGGCCGTCGGCGCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACATTATTCTATGTATCAGCTAAGACTTGTGGAAGGCTTGTCCTAGACTTGTGTGGCTTTGTGTGTTTTCATTCAAACCTGTTGTTCTGTTGTGATTGTATTTGGAATTAGATATACTACAACATTTTATTAGAACACTACACAAAACGAATAATGAAAAAAAAATTAATTAAAATTACAAAAAATTTCCACCTTTTCGTTTCCTTTTCTTTGAAATCC</canonical>
            <polymorphic>AAAATGAGACACATGGTCTCAAATTTGACGATTCGGGTGGCGTTCCATTAGAGTGTTCACGGTAAATCCATTTTTTTGAATTAAAGAGTTGTCGAAAAAGAGGATTCCTATCACAACTTCTCATTGAATTGTTTCAACAAAACCCAAATTTCTAAAATTATTTATGTTCATTCATTCTCATTTGTCCTCCTCCAACTTGAAATTTTTCATTCTCTGTTTTCTCAACATTCTTGAGAATTCAATTTTACCTCAACTGGATAGATTCTAGATTTCCTACCTTCGGTGTTTTGGATAAAAAAAATTCACTGGAAAATTGGAAAATTACATAAAATTGCCAAATTGGTGTGTTGTTGTTGTGTGGAGCTTTGCATTTGAACGTTTTCTTTCTCTTCAGAGAAAAAAAAACTAAATTATTCATGTCACATGTCAACGGACGGGTAGCAGTTTTTTCCTAATATTTATAAAGATTTTTGGGTAATTTTTAAGCTTTACGGTTCATWATAAAAATTACTGTTTCAAGAAATTTTGGTTCGAGAATATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACAATTGTGCAAGAAAGAAAAAATTGCATACTTTGATAGTTTTGCGAAAAAAAACAATTCCTAATACTTTTGTTTGATTCAAAAAAAAAATTCCACTGTTTCAAATTACTTTTTAACTTTTGAACTATTTTTCTTTTCTCGGCCGTCGGCGCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACATTATTCTATGTATCAGCTAAGACTTGTGGAAGGCTTGTCCTAGACTTGTGTGGCTTTGTGTGTTTTCATTCAAACCTGTTGTTCTGTTGTGATTGTATTTGGAATTAGATATACTACAACATTTTATTAGAACACTACACAAAACGAATAATGAAAAAAAAATTAATTAAAATTACAAAAAATTTCCACCTTTTCGTTTCCTTTTCTTTGAAATCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>499 461 40</canonical_bands>
                <polymorphic_bands>539 461</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTGGTGTGTTGTTGTTGT</pcr_primer_p1>
		<pcr_primer_p2>TGTGGTAAATTAAATGACATGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTGGTGTGTTGTTGTTGTGTGGAGCTTTGCATTTGAACGTTTTCTTTCTCTTCAGAGAAAAAAAAACTAAATTATTCATGTCACATGTCAACGGACGGGTAGCAGTTTTTTCCTAATATTTATAAAGATTTTTGGGTAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTTCGAGAATATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACA</canonical_amplicon>
		<polymorphic_amplicon>AAATTGGTGTGTTGTTGTTGTGTGGAGCTTTGCATTTGAACGTTTTCTTTCTCTTCAGAGAAAAAAAAACTAAATTATTCATGTCACATGTCAACGGACGGGTAGCAGTTTTTTCCTAATATTTATAAAGATTTTTGGGTAATTTTTAAGCTTTACGGTTCATWATAAAAATTACTGTTTCAAGAAATTTTGGTTCGAGAATATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb400</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>15123</contig_pos>
        <strand></strand>
        <context>AATTTTGGTT[C/T]GAGAAWATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTT</left_flank>
        <right_flank>GAGAATATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTAC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGGGTGGCGTTCCATTAGAGTGTTCACGGTAAATCCATTTTTTTGAATTAAAGAGTTGTCGAAAAAGAGGATTCCTATCACAACTTCTCATTGAATTGTTTCAACAAAACCCAAATTTCTAAAATTATTTATGTTCATTCATTCTCATTTGTCCTCCTCCAACTTGAAATTTTTCATTCTCTGTTTTCTCAACATTCTTGAGAATTCAATTTTACCTCAACTGGATAGATTCTAGATTTCCTACCTTCGGTGTTTTGGATAAAAAAAATTCACTGGAAAATTGGAAAATTACATAAAATTGCCAAATTGGTGTGTTGTTGTTGTGTGGAGCTTTGCATTTGAACGTTTTCTTTCTCTTCAGAGAAAAAAAAACTAAATTATTCATGTCACATGTCAACGGACGGGTAGCAGTTTTTTCCTAATATTTATAAAGATTTTTGGGTAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTTCGAGAATATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACAATTGTGCAAGAAAGAAAAAATTGCATACTTTGATAGTTTTGCGAAAAAAAACAATTCCTAATACTTTTGTTTGATTCAAAAAAAAAATTCCACTGTTTCAAATTACTTTTTAACTTTTGAACTATTTTTCTTTTCTCGGCCGTCGGCGCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACATTATTCTATGTATCAGCTAAGACTTGTGGAAGGCTTGTCCTAGACTTGTGTGGCTTTGTGTGTTTTCATTCAAACCTGTTGTTCTGTTGTGATTGTATTTGGAATTAGATATACTACAACATTTTATTAGAACACTACACAAAACGAATAATGAAAAAAAAATTAATTAAAATTACAAAAAATTTCCACCTTTTCGTTTCCTTTTCTTTGAAATCCGTTGAAATTCATCGACAATGACAGTGTAATCG</canonical>
            <polymorphic>TCGGGTGGCGTTCCATTAGAGTGTTCACGGTAAATCCATTTTTTTGAATTAAAGAGTTGTCGAAAAAGAGGATTCCTATCACAACTTCTCATTGAATTGTTTCAACAAAACCCAAATTTCTAAAATTATTTATGTTCATTCATTCTCATTTGTCCTCCTCCAACTTGAAATTTTTCATTCTCTGTTTTCTCAACATTCTTGAGAATTCAATTTTACCTCAACTGGATAGATTCTAGATTTCCTACCTTCGGTGTTTTGGATAAAAAAAATTCACTGGAAAATTGGAAAATTACATAAAATTGCCAAATTGGTGTGTTGTTGTTGTGTGGAGCTTTGCATTTGAACGTTTTCTTTCTCTTCAGAGAAAAAAAAACTAAATTATTCATGTCACATGTCAACGGACGGGTAGCAGTTTTTTCCTAATATTTATAAAGATTTTTGGGTAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTTYGAGAATATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACAATTGTGCAAGAAAGAAAAAATTGCATACTTTGATAGTTTTGCGAAAAAAAACAATTCCTAATACTTTTGTTTGATTCAAAAAAAAAATTCCACTGTTTCAAATTACTTTTTAACTTTTGAACTATTTTTCTTTTCTCGGCCGTCGGCGCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACATTATTCTATGTATCAGCTAAGACTTGTGGAAGGCTTGTCCTAGACTTGTGTGGCTTTGTGTGTTTTCATTCAAACCTGTTGTTCTGTTGTGATTGTATTTGGAATTAGATATACTACAACATTTTATTAGAACACTACACAAAACGAATAATGAAAAAAAAATTAATTAAAATTACAAAAAATTTCCACCTTTTCGTTTCCTTTTCTTTGAAATCCGTTGAAATTCATCGACAATGACAGTGTAATCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>481 439 61 19</canonical_bands>
                <polymorphic_bands>920 61 19</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>500 252 198 35 15</canonical_bands>
                <polymorphic_bands>515 252 198 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATTTTTAAGCTTTACGGTTCA</pcr_primer_p1>
		<pcr_primer_p2>CGAGAAAAGAAAAATAGTTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTTCGAGAATATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACAATTGTGCAAGAAAGAAAAAATTGCATACTTTGATAGTTTTGCGAAAAAAAACAATTCCTAATACTTTTGTTTGATTCAAAAAAAAAATTCCACTGTTTCAAATTACTTTTTAACTTTTGAACTATTTTTCTTTTCTCG</canonical_amplicon>
		<polymorphic_amplicon>TAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTTYGAGAATATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACAATTGTGCAAGAAAGAAAAAATTGCATACTTTGATAGTTTTGCGAAAAAAAACAATTCCTAATACTTTTGTTTGATTCAAAAAAAAAATTCCACTGTTTCAAATTACTTTTTAACTTTTGAACTATTTTTCTTTTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb401</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>15129</contig_pos>
        <strand></strand>
        <context>GGTTYGAGAA[T/A]ATTCGTTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTTCGAGAA</left_flank>
        <right_flank>ATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACAAT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCGTTCCATTAGAGTGTTCACGGTAAATCCATTTTTTTGAATTAAAGAGTTGTCGAAAAAGAGGATTCCTATCACAACTTCTCATTGAATTGTTTCAACAAAACCCAAATTTCTAAAATTATTTATGTTCATTCATTCTCATTTGTCCTCCTCCAACTTGAAATTTTTCATTCTCTGTTTTCTCAACATTCTTGAGAATTCAATTTTACCTCAACTGGATAGATTCTAGATTTCCTACCTTCGGTGTTTTGGATAAAAAAAATTCACTGGAAAATTGGAAAATTACATAAAATTGCCAAATTGGTGTGTTGTTGTTGTGTGGAGCTTTGCATTTGAACGTTTTCTTTCTCTTCAGAGAAAAAAAAACTAAATTATTCATGTCACATGTCAACGGACGGGTAGCAGTTTTTTCCTAATATTTATAAAGATTTTTGGGTAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTTCGAGAATATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACAATTGTGCAAGAAAGAAAAAATTGCATACTTTGATAGTTTTGCGAAAAAAAACAATTCCTAATACTTTTGTTTGATTCAAAAAAAAAATTCCACTGTTTCAAATTACTTTTTAACTTTTGAACTATTTTTCTTTTCTCGGCCGTCGGCGCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACATTATTCTATGTATCAGCTAAGACTTGTGGAAGGCTTGTCCTAGACTTGTGTGGCTTTGTGTGTTTTCATTCAAACCTGTTGTTCTGTTGTGATTGTATTTGGAATTAGATATACTACAACATTTTATTAGAACACTACACAAAACGAATAATGAAAAAAAAATTAATTAAAATTACAAAAAATTTCCACCTTTTCGTTTCCTTTTCTTTGAAATCCGTTGAAATTCATCGACAATGACAGTGTAATCGCATCAA</canonical>
            <polymorphic>GGCGTTCCATTAGAGTGTTCACGGTAAATCCATTTTTTTGAATTAAAGAGTTGTCGAAAAAGAGGATTCCTATCACAACTTCTCATTGAATTGTTTCAACAAAACCCAAATTTCTAAAATTATTTATGTTCATTCATTCTCATTTGTCCTCCTCCAACTTGAAATTTTTCATTCTCTGTTTTCTCAACATTCTTGAGAATTCAATTTTACCTCAACTGGATAGATTCTAGATTTCCTACCTTCGGTGTTTTGGATAAAAAAAATTCACTGGAAAATTGGAAAATTACATAAAATTGCCAAATTGGTGTGTTGTTGTTGTGTGGAGCTTTGCATTTGAACGTTTTCTTTCTCTTCAGAGAAAAAAAAACTAAATTATTCATGTCACATGTCAACGGACGGGTAGCAGTTTTTTCCTAATATTTATAAAGATTTTTGGGTAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTTCGAGAAWATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACAATTGTGCAAGAAAGAAAAAATTGCATACTTTGATAGTTTTGCGAAAAAAAACAATTCCTAATACTTTTGTTTGATTCAAAAAAAAAATTCCACTGTTTCAAATTACTTTTTAACTTTTGAACTATTTTTCTTTTCTCGGCCGTCGGCGCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACATTATTCTATGTATCAGCTAAGACTTGTGGAAGGCTTGTCCTAGACTTGTGTGGCTTTGTGTGTTTTCATTCAAACCTGTTGTTCTGTTGTGATTGTATTTGGAATTAGATATACTACAACATTTTATTAGAACACTACACAAAACGAATAATGAAAAAAAAATTAATTAAAATTACAAAAAATTTCCACCTTTTCGTTTCCTTTTCTTTGAAATCCGTTGAAATTCATCGACAATGACAGTGTAATCGCATCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 418 82</canonical_bands>
                <polymorphic_bands>582 418</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATTTTTAAGCTTTACGGTTCA</pcr_primer_p1>
		<pcr_primer_p2>CGAGAAAAGAAAAATAGTTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTTCGAGAATATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACAATTGTGCAAGAAAGAAAAAATTGCATACTTTGATAGTTTTGCGAAAAAAAACAATTCCTAATACTTTTGTTTGATTCAAAAAAAAAATTCCACTGTTTCAAATTACTTTTTAACTTTTGAACTATTTTTCTTTTCTCG</canonical_amplicon>
		<polymorphic_amplicon>TAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTTCGAGAAWATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACAATTGTGCAAGAAAGAAAAAATTGCATACTTTGATAGTTTTGCGAAAAAAAACAATTCCTAATACTTTTGTTTGATTCAAAAAAAAAATTCCACTGTTTCAAATTACTTTTTAACTTTTGAACTATTTTTCTTTTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb404</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>18482</contig_pos>
        <strand></strand>
        <context>AACGTACCAT[A/C]CGTGAATAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTCCCATTTGCATGTGAGTCTGCTGATTCACATACGGATAACGTACCAT</left_flank>
        <right_flank>CGTGAATAATAAATTCAATTGGTAAACATATTTTAAAACAGTAACTTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACGAACACATTGAAAATGTGAAAACCGAATTTAGGTTTTAAAAGTGTGTGACTTTTTTGTTCAAAAAATTATCACTGTTTCAGTTCGAAGTTTATTGGGCACTTGTTTCATTCTTCACAGTTTCAAGATTGGAATGAAATTAATATATCACAAAATTCAACATTAGGATATGGCATATGCAAGGAAAAATTCAAATTCTCAGCATCCTTCAGCACTATATTATCATAGAAAGAAGTTTTCAATACAAAGCTATATATGAGAAAATAATCAGCGAAATAGTAACTTTTTTCTTGAAAACCACAACTTTAATGGACTTAGCGGTTTTTGAGGCAAGAGATTCTGAAATTTGAAATTCATCATCTACATCTTTTTCACAGTTTCAAACTTGCGGAAAAAATCCCCCAGTTGTGGACGAAAATCGTTGAATAATCTCATAGAAGCATATATCTCCCATTTGCATGTGAGTCTGCTGATTCACATACGGATAACGTACCATACGTGAATAATAAATTCAATTGGTAAACATATTTTAAAACAGTAACTTTTTTTCAAAAATCCCAACTTGATAGATTCAAAGATTTTCGAGGCAACAAATGCTAATATTCATTTAAAAAATAGAAGACAGCAAATCTTCAATTCACTAAATGAACAAAGATTTTTTGAATACTAGGATTTTCGAAACGGTAGTTTTGCATTGTAATTTTTTCAAGTACCAAATGTCTGTTAATCTGGTAGAAGCAGCTATTTTCCAGCTGATTACAATAGCTTCTCTCTCTCTCTCTCTCTCTCTCCAAACGTTGACCCCCAGAAACTGCACTTTTAGACTTCATCTGGATCAAAAAGTACATGTTGTCCTTCTCTTCTCCACCCAAAATTTTTATGTTCCATGCGTCAATTTCGAATTCTTGGACTTTTCCCGTTCTAAATTGAGACACACAAAGGCATTAGCATTCACTAATTGCTCATCCTTCCCCTCTTTTCGAATAAAGTGAATACA</canonical>
            <polymorphic>AAAACGAACACATTGAAAATGTGAAAACCGAATTTAGGTTTTAAAAGTGTGTGACTTTTTTGTTCAAAAAATTATCACTGTTTCAGTTCGAAGTTTATTGGGCACTTGTTTCATTCTTCACAGTTTCAAGATTGGAATGAAATTAATATATCACAAAATTCAACATTAGGATATGGCATATGCAAGGAAAAATTCAAATTCTCAGCATCCTTCAGCACTATATTATCATAGAAAGAAGTTTTCAATACAAAGCTATATATGAGAAAATAATCAGCGAAATAGTAACTTTTTTCTTGAAAACCACAACTTTAATGGACTTAGCGGTTTTTGAGGCAAGAGATTCTGAAATTTGAAATTCATCATCTACATCTTTTTCACAGTTTCAAACTTGCGGAAAAAATCCCCCAGTTGTGGACGAAAATCGTTGAATAATCTCATAGAAGCATATATCTCCCATTTGCATGTGAGTCTGCTGATTCACATACGGATAACGTACCATMCGTGAATAATAAATTCAATTGGTAAACATATTTTAAAACAGTAACTTTTTTTCAAAAATCCCAACTTGATAGATTCAAAGATTTTCGAGGCAACAAATGCTAATATTCATTTAAAAAATAGAAGACAGCAAATCTTCAATTCACTAAATGAACAAAGATTTTTTGAATACTAGGATTTTCGAAACGGTAGTTTTGCATTGTAATTTTTTCAAGTACCAAATGTCTGTTAATCTGGTAGAAGCAGCTATTTTCCAGCTGATTACAATAGCTTCTCTCTCTCTCTCTCTCTCTCTCCAAACGTTGACCCCCAGAAACTGCACTTTTAGACTTCATCTGGATCAAAAAGTACATGTTGTCCTTCTCTTCTCCACCCAAAATTTTTATGTTCCATGCGTCAATTTCGAATTCTTGGACTTTTCCCGTTCTAAATTGAGACACACAAAGGCATTAGCATTCACTAATTGCTCATCCTTCCCCTCTTTTCGAATAAAGTGAATACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>491 298 202 9</canonical_bands>
                <polymorphic_bands>491 307 202</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAATTCATCATCTACATCTT</pcr_primer_p1>
		<pcr_primer_p2>CTCGAAAATCTTTGAATCTATCA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAATTCATCATCTACATCTTTTTCACAGTTTCAAACTTGCGGAAAAAATCCCCCAGTTGTGGACGAAAATCGTTGAATAATCTCATAGAAGCATATATCTCCCATTTGCATGTGAGTCTGCTGATTCACATACGGATAACGTACCATACGTGAATAATAAATTCAATTGGTAAACATATTTTAAAACAGTAACTTTTTTTCAAAAATCCCAACTTGATAGATTCAAAGATTTTCGAG</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAATTCATCATCTACATCTTTTTCACAGTTTCAAACTTGCGGAAAAAATCCCCCAGTTGTGGACGAAAATCGTTGAATAATCTCATAGAAGCATATATCTCCCATTTGCATGTGAGTCTGCTGATTCACATACGGATAACGTACCATMCGTGAATAATAAATTCAATTGGTAAACATATTTTAAAACAGTAACTTTTTTTCAAAAATCCCAACTTGATAGATTCAAAGATTTTCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb405</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>18426</contig_pos>
        <strand></strand>
        <context>CTCATAGAAG[C/A]ATATATCTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GAAAAAATCCCCCAGTTGTGGACGAAAATCGTTGAATAATCTCATAGAAG</left_flank>
        <right_flank>ATATATCTCCCATTTGCATGTGAGTCTGCTGATTCACATACGGATAACGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTCGAATGTGTTCCTGGTGGAGTTATTCATCGAGAATGTTCTCGGGATAAAAAAAAACGAACACATTGAAAATGTGAAAACCGAATTTAGGTTTTAAAAGTGTGTGACTTTTTTGTTCAAAAAATTATCACTGTTTCAGTTCGAAGTTTATTGGGCACTTGTTTCATTCTTCACAGTTTCAAGATTGGAATGAAATTAATATATCACAAAATTCAACATTAGGATATGGCATATGCAAGGAAAAATTCAAATTCTCAGCATCCTTCAGCACTATATTATCATAGAAAGAAGTTTTCAATACAAAGCTATATATGAGAAAATAATCAGCGAAATAGTAACTTTTTTCTTGAAAACCACAACTTTAATGGACTTAGCGGTTTTTGAGGCAAGAGATTCTGAAATTTGAAATTCATCATCTACATCTTTTTCACAGTTTCAAACTTGCGGAAAAAATCCCCCAGTTGTGGACGAAAATCGTTGAATAATCTCATAGAAGCATATATCTCCCATTTGCATGTGAGTCTGCTGATTCACATACGGATAACGTACCATACGTGAATAATAAATTCAATTGGTAAACATATTTTAAAACAGTAACTTTTTTTCAAAAATCCCAACTTGATAGATTCAAAGATTTTCGAGGCAACAAATGCTAATATTCATTTAAAAAATAGAAGACAGCAAATCTTCAATTCACTAAATGAACAAAGATTTTTTGAATACTAGGATTTTCGAAACGGTAGTTTTGCATTGTAATTTTTTCAAGTACCAAATGTCTGTTAATCTGGTAGAAGCAGCTATTTTCCAGCTGATTACAATAGCTTCTCTCTCTCTCTCTCTCTCTCTCCAAACGTTGACCCCCAGAAACTGCACTTTTAGACTTCATCTGGATCAAAAAGTACATGTTGTCCTTCTCTTCTCCACCCAAAATTTTTATGTTCCATGCGTCAATTTCGAATTCTTGGACTTTTCCCGTTCTAAATTGAGACACACAAAG</canonical>
            <polymorphic>AATTTCGAATGTGTTCCTGGTGGAGTTATTCATCGAGAATGTTCTCGGGATAAAAAAAAACGAACACATTGAAAATGTGAAAACCGAATTTAGGTTTTAAAAGTGTGTGACTTTTTTGTTCAAAAAATTATCACTGTTTCAGTTCGAAGTTTATTGGGCACTTGTTTCATTCTTCACAGTTTCAAGATTGGAATGAAATTAATATATCACAAAATTCAACATTAGGATATGGCATATGCAAGGAAAAATTCAAATTCTCAGCATCCTTCAGCACTATATTATCATAGAAAGAAGTTTTCAATACAAAGCTATATATGAGAAAATAATCAGCGAAATAGTAACTTTTTTCTTGAAAACCACAACTTTAATGGACTTAGCGGTTTTTGAGGCAAGAGATTCTGAAATTTGAAATTCATCATCTACATCTTTTTCACAGTTTCAAACTTGCGGAAAAAATCCCCCAGTTGTGGACGAAAATCGTTGAATAATCTCATAGAAGMATATATCTCCCATTTGCATGTGAGTCTGCTGATTCACATACGGATAACGTACCATACGTGAATAATAAATTCAATTGGTAAACATATTTTAAAACAGTAACTTTTTTTCAAAAATCCCAACTTGATAGATTCAAAGATTTTCGAGGCAACAAATGCTAATATTCATTTAAAAAATAGAAGACAGCAAATCTTCAATTCACTAAATGAACAAAGATTTTTTGAATACTAGGATTTTCGAAACGGTAGTTTTGCATTGTAATTTTTTCAAGTACCAAATGTCTGTTAATCTGGTAGAAGCAGCTATTTTCCAGCTGATTACAATAGCTTCTCTCTCTCTCTCTCTCTCTCTCCAAACGTTGACCCCCAGAAACTGCACTTTTAGACTTCATCTGGATCAAAAAGTACATGTTGTCCTTCTCTTCTCCACCCAAAATTTTTATGTTCCATGCGTCAATTTCGAATTCTTGGACTTTTCCCGTTCTAAATTGAGACACACAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAATTCATCATCTACATCTT</pcr_primer_p1>
		<pcr_primer_p2>CTCGAAAATCTTTGAATCTATCA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAATTCATCATCTACATCTTTTTCACAGTTTCAAACTTGCGGAAAAAATCCCCCAGTTGTGGACGAAAATCGTTGAATAATCTCATAGAAGCATATATCTCCCATTTGCATGTGAGTCTGCTGATTCACATACGGATAACGTACCATACGTGAATAATAAATTCAATTGGTAAACATATTTTAAAACAGTAACTTTTTTTCAAAAATCCCAACTTGATAGATTCAAAGATTTTCGAG</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAATTCATCATCTACATCTTTTTCACAGTTTCAAACTTGCGGAAAAAATCCCCCAGTTGTGGACGAAAATCGTTGAATAATCTCATAGAAGMATATATCTCCCATTTGCATGTGAGTCTGCTGATTCACATACGGATAACGTACCATACGTGAATAATAAATTCAATTGGTAAACATATTTTAAAACAGTAACTTTTTTTCAAAAATCCCAACTTGATAGATTCAAAGATTTTCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb406</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>27536</contig_pos>
        <strand></strand>
        <context>TTTTTCTCTT[T/C]TAGAGACTYA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATGATCTCGCTTCTCTGCACTCTCTCCTTTTTACCCACTTTTTTTCTCTT</left_flank>
        <right_flank>TAGAGACTCAGAGAAAAATACACTCTAGCTTCTCTATGCCCTCCTCTTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACGTGATTTCGAAATTTCGAAAAAAAAGAGCCCACTAATTGATATTCTGATCACTGTGTTCGCTTTTTGAATCGGCTCATTTTTTGAAGGGAGAGGTGGACCGACCACCCCAAAGAAATAATTGAATTTCTTTCTAGGAAAGCAGATTCGATTTCAGTTTTTGGGTTCTATGGCTTTTCGGGTTTGTTTTCTGAAATTTTCTCAGAAAAAAATTGAGAAAAAGAGACGAAGAGAAGATAGAGTTACTGGTTTCTTTGTGCATTCCTTGCCCTCACGTTTACCTCAATTATCGCATTTCCTGTAAAAGATAACCAAAATCTGTGAACTACATAAATGGTGCTGATATTATAACGCACATTTTATCAGTTAACAGATTTTTGATATCATTTATTAGAGCCGAGAAAATTGAGCTCAAAGTTAACACCTGCTGGAGACGCAGACAACTAAATGATCTCGCTTCTCTGCACTCTCTCCTTTTTACCCACTTTTTTTCTCTTTTAGAGACTCAGAGAAAAATACACTCTAGCTTCTCTATGCCCTCCTCTTGAATCTTTATACTTCTCCTAGACTCTAGAAAAAGTCCTAAAAAGCTCATTAAGTGCATTTCCTTCTTCTTTTTTGATTCCTCATTTTTTCATGGTCCACTTGAGAGAGAAGAAAAAGAGGCTTGTTTATATGACCACAAATTAGATCCGTGTTTTAGTTTTCCGAGGTCATGGAGCATACAGAAGAGAAGATCAAAAGGAGTTTCGAAACCTATTTTTTCCATTTTTGGCTCAAAAATTTAGGAGAGGCACGTAGGTGTTTTATTTGTTTGTGTGTATGAGCAATCCTGGATTAATCTGACTGGAGATTTATTTACAGATTTTTTCAGTTATGACGAATTTGTTGATTTCGAAATGGGAAACCAAGAAGAAGCCAAAAAATGATGTTTTAGGGTTTAAGAGGATAAGCGACTTTCAGTTTTGATGTGTCCATTTTTATCAGTGCTAAAAGTT</canonical>
            <polymorphic>TGACGTGATTTCGAAATTTCGAAAAAAAAGAGCCCACTAATTGATATTCTGATCACTGTGTTCGCTTTTTGAATCGGCTCATTTTTTGAAGGGAGAGGTGGACCGACCACCCCAAAGAAATAATTGAATTTCTTTCTAGGAAAGCAGATTCGATTTCAGTTTTTGGGTTCTATGGCTTTTCGGGTTTGTTTTCTGAAATTTTCTCAGAAAAAAATTGAGAAAAAGAGACGAAGAGAAGATAGAGTTACTGGTTTCTTTGTGCATTCCTTGCCCTCACGTTTACCTCAATTATCGCATTTCCTGTAAAAGATAACCAAAATCTGTGAACTACATAAATGGTGCTGATATTATAACGCACATTTTATCAGTTAACAGATTTTTGATATCATTTATTAGAGCCGAGAAAATTGAGCTCAAAGTTAACACCTGCTGGAGACGCAGACAACTAAATGATCTCGCTTCTCTGCACTCTCTCCTTTTTACCCACTTTTTTTCTCTTYTAGAGACTCAGAGAAAAATACACTCTAGCTTCTCTATGCCCTCCTCTTGAATCTTTATACTTCTCCTAGACTCTAGAAAAAGTCCTAAAAAGCTCATTAAGTGCATTTCCTTCTTCTTTTTTGATTCCTCATTTTTTCATGGTCCACTTGAGAGAGAAGAAAAAGAGGCTTGTTTATATGACCACAAATTAGATCCGTGTTTTAGTTTTCCGAGGTCATGGAGCATACAGAAGAGAAGATCAAAAGGAGTTTCGAAACCTATTTTTTCCATTTTTGGCTCAAAAATTTAGGAGAGGCACGTAGGTGTTTTATTTGTTTGTGTGTATGAGCAATCCTGGATTAATCTGACTGGAGATTTATTTACAGATTTTTTCAGTTATGACGAATTTGTTGATTTCGAAATGGGAAACCAAGAAGAAGCCAAAAAATGATGTTTTAGGGTTTAAGAGGATAAGCGACTTTCAGTTTTGATGTGTCCATTTTTATCAGTGCTAAAAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATAGAGTTACTGGTTTCTTTGTG</pcr_primer_p1>
		<pcr_primer_p2>GGAGAAGTATAAAGATTCAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>AGATAGAGTTACTGGTTTCTTTGTGCATTCCTTGCCCTCACGTTTACCTCAATTATCGCATTTCCTGTAAAAGATAACCAAAATCTGTGAACTACATAAATGGTGCTGATATTATAACGCACATTTTATCAGTTAACAGATTTTTGATATCATTTATTAGAGCCGAGAAAATTGAGCTCAAAGTTAACACCTGCTGGAGACGCAGACAACTAAATGATCTCGCTTCTCTGCACTCTCTCCTTTTTACCCACTTTTTTTCTCTTTTAGAGACTCAGAGAAAAATACACTCTAGCTTCTCTATGCCCTCCTCTTGAATCTTTATACTTCTCC</canonical_amplicon>
		<polymorphic_amplicon>AGATAGAGTTACTGGTTTCTTTGTGCATTCCTTGCCCTCACGTTTACCTCAATTATCGCATTTCCTGTAAAAGATAACCAAAATCTGTGAACTACATAAATGGTGCTGATATTATAACGCACATTTTATCAGTTAACAGATTTTTGATATCATTTATTAGAGCCGAGAAAATTGAGCTCAAAGTTAACACCTGCTGGAGACGCAGACAACTAAATGATCTCGCTTCTCTGCACTCTCTCCTTTTTACCCACTTTTTTTCTCTTYTAGAGACTCAGAGAAAAATACACTCTAGCTTCTCTATGCCCTCCTCTTGAATCTTTATACTTCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb407</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>27545</contig_pos>
        <strand></strand>
        <context>TYTAGAGACT[C/T]AGAGAAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTCTCTGCACTCTCTCCTTTTTACCCACTTTTTTTCTCTTTTAGAGACT</left_flank>
        <right_flank>AGAGAAAAATACACTCTAGCTTCTCTATGCCCTCCTCTTGAATCTTTATA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGAAATTTCGAAAAAAAAGAGCCCACTAATTGATATTCTGATCACTGTGTTCGCTTTTTGAATCGGCTCATTTTTTGAAGGGAGAGGTGGACCGACCACCCCAAAGAAATAATTGAATTTCTTTCTAGGAAAGCAGATTCGATTTCAGTTTTTGGGTTCTATGGCTTTTCGGGTTTGTTTTCTGAAATTTTCTCAGAAAAAAATTGAGAAAAAGAGACGAAGAGAAGATAGAGTTACTGGTTTCTTTGTGCATTCCTTGCCCTCACGTTTACCTCAATTATCGCATTTCCTGTAAAAGATAACCAAAATCTGTGAACTACATAAATGGTGCTGATATTATAACGCACATTTTATCAGTTAACAGATTTTTGATATCATTTATTAGAGCCGAGAAAATTGAGCTCAAAGTTAACACCTGCTGGAGACGCAGACAACTAAATGATCTCGCTTCTCTGCACTCTCTCCTTTTTACCCACTTTTTTTCTCTTTTAGAGACTCAGAGAAAAATACACTCTAGCTTCTCTATGCCCTCCTCTTGAATCTTTATACTTCTCCTAGACTCTAGAAAAAGTCCTAAAAAGCTCATTAAGTGCATTTCCTTCTTCTTTTTTGATTCCTCATTTTTTCATGGTCCACTTGAGAGAGAAGAAAAAGAGGCTTGTTTATATGACCACAAATTAGATCCGTGTTTTAGTTTTCCGAGGTCATGGAGCATACAGAAGAGAAGATCAAAAGGAGTTTCGAAACCTATTTTTTCCATTTTTGGCTCAAAAATTTAGGAGAGGCACGTAGGTGTTTTATTTGTTTGTGTGTATGAGCAATCCTGGATTAATCTGACTGGAGATTTATTTACAGATTTTTTCAGTTATGACGAATTTGTTGATTTCGAAATGGGAAACCAAGAAGAAGCCAAAAAATGATGTTTTAGGGTTTAAGAGGATAAGCGACTTTCAGTTTTGATGTGTCCATTTTTATCAGTGCTAAAAGTTAGTTGAGAA</canonical>
            <polymorphic>TTCGAAATTTCGAAAAAAAAGAGCCCACTAATTGATATTCTGATCACTGTGTTCGCTTTTTGAATCGGCTCATTTTTTGAAGGGAGAGGTGGACCGACCACCCCAAAGAAATAATTGAATTTCTTTCTAGGAAAGCAGATTCGATTTCAGTTTTTGGGTTCTATGGCTTTTCGGGTTTGTTTTCTGAAATTTTCTCAGAAAAAAATTGAGAAAAAGAGACGAAGAGAAGATAGAGTTACTGGTTTCTTTGTGCATTCCTTGCCCTCACGTTTACCTCAATTATCGCATTTCCTGTAAAAGATAACCAAAATCTGTGAACTACATAAATGGTGCTGATATTATAACGCACATTTTATCAGTTAACAGATTTTTGATATCATTTATTAGAGCCGAGAAAATTGAGCTCAAAGTTAACACCTGCTGGAGACGCAGACAACTAAATGATCTCGCTTCTCTGCACTCTCTCCTTTTTACCCACTTTTTTTCTCTTTTAGAGACTYAGAGAAAAATACACTCTAGCTTCTCTATGCCCTCCTCTTGAATCTTTATACTTCTCCTAGACTCTAGAAAAAGTCCTAAAAAGCTCATTAAGTGCATTTCCTTCTTCTTTTTTGATTCCTCATTTTTTCATGGTCCACTTGAGAGAGAAGAAAAAGAGGCTTGTTTATATGACCACAAATTAGATCCGTGTTTTAGTTTTCCGAGGTCATGGAGCATACAGAAGAGAAGATCAAAAGGAGTTTCGAAACCTATTTTTTCCATTTTTGGCTCAAAAATTTAGGAGAGGCACGTAGGTGTTTTATTTGTTTGTGTGTATGAGCAATCCTGGATTAATCTGACTGGAGATTTATTTACAGATTTTTTCAGTTATGACGAATTTGTTGATTTCGAAATGGGAAACCAAGAAGAAGCCAAAAAATGATGTTTTAGGGTTTAAGAGGATAAGCGACTTTCAGTTTTGATGTGTCCATTTTTATCAGTGCTAAAAGTTAGTTGAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>386 358 76 62 54 44 20</canonical_bands>
                <polymorphic_bands>402 386 76 62 54 20</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>304 201 163 144 135 41 12</canonical_bands>
                <polymorphic_bands>505 163 144 135 41 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATAGAGTTACTGGTTTCTTTGTG</pcr_primer_p1>
		<pcr_primer_p2>GGAGAAGTATAAAGATTCAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>AGATAGAGTTACTGGTTTCTTTGTGCATTCCTTGCCCTCACGTTTACCTCAATTATCGCATTTCCTGTAAAAGATAACCAAAATCTGTGAACTACATAAATGGTGCTGATATTATAACGCACATTTTATCAGTTAACAGATTTTTGATATCATTTATTAGAGCCGAGAAAATTGAGCTCAAAGTTAACACCTGCTGGAGACGCAGACAACTAAATGATCTCGCTTCTCTGCACTCTCTCCTTTTTACCCACTTTTTTTCTCTTTTAGAGACTCAGAGAAAAATACACTCTAGCTTCTCTATGCCCTCCTCTTGAATCTTTATACTTCTCC</canonical_amplicon>
		<polymorphic_amplicon>AGATAGAGTTACTGGTTTCTTTGTGCATTCCTTGCCCTCACGTTTACCTCAATTATCGCATTTCCTGTAAAAGATAACCAAAATCTGTGAACTACATAAATGGTGCTGATATTATAACGCACATTTTATCAGTTAACAGATTTTTGATATCATTTATTAGAGCCGAGAAAATTGAGCTCAAAGTTAACACCTGCTGGAGACGCAGACAACTAAATGATCTCGCTTCTCTGCACTCTCTCCTTTTTACCCACTTTTTTTCTCTTTTAGAGACTYAGAGAAAAATACACTCTAGCTTCTCTATGCCCTCCTCTTGAATCTTTATACTTCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb408</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>27747</contig_pos>
        <strand></strand>
        <context>TTTAGTTTTC[C/T]GAGGTCATGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAGAGGCTTGTTTATATGACCACAAATTAGATCCGTGTTTTAGTTTTC</left_flank>
        <right_flank>GAGGTCATGGAGCATACAGAAGAGAAGATCAAAAGGAGTTTCGAAACCTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTGAGAAAAAGAGACGAAGAGAAGATAGAGTTACTGGTTTCTTTGTGCATTCCTTGCCCTCACGTTTACCTCAATTATCGCATTTCCTGTAAAAGATAACCAAAATCTGTGAACTACATAAATGGTGCTGATATTATAACGCACATTTTATCAGTTAACAGATTTTTGATATCATTTATTAGAGCCGAGAAAATTGAGCTCAAAGTTAACACCTGCTGGAGACGCAGACAACTAAATGATCTCGCTTCTCTGCACTCTCTCCTTTTTACCCACTTTTTTTCTCTTTTAGAGACTCAGAGAAAAATACACTCTAGCTTCTCTATGCCCTCCTCTTGAATCTTTATACTTCTCCTAGACTCTAGAAAAAGTCCTAAAAAGCTCATTAAGTGCATTTCCTTCTTCTTTTTTGATTCCTCATTTTTTCATGGTCCACTTGAGAGAGAAGAAAAAGAGGCTTGTTTATATGACCACAAATTAGATCCGTGTTTTAGTTTTCCGAGGTCATGGAGCATACAGAAGAGAAGATCAAAAGGAGTTTCGAAACCTATTTTTTCCATTTTTGGCTCAAAAATTTAGGAGAGGCACGTAGGTGTTTTATTTGTTTGTGTGTATGAGCAATCCTGGATTAATCTGACTGGAGATTTATTTACAGATTTTTTCAGTTATGACGAATTTGTTGATTTCGAAATGGGAAACCAAGAAGAAGCCAAAAAATGATGTTTTAGGGTTTAAGAGGATAAGCGACTTTCAGTTTTGATGTGTCCATTTTTATCAGTGCTAAAAGTTAGTTGAGAATTTTTCAGTTTGTCTGAAAATTTCAGAGTATGCCAAACAAAAATAGAGCTTTTTTTGTAGTTAACAACTTTTTTGGGAAATTTTATCCAAATGAGATATACCGCCTGGAATCAATAAGCCCTGAAAGGAGAGTCGTGGAACTTTAAAGACGTTTACCTAGTTTTGTTGGATTTTCACAAACAGTTGTCAACTACAAAATTAA</canonical>
            <polymorphic>AAATTGAGAAAAAGAGACGAAGAGAAGATAGAGTTACTGGTTTCTTTGTGCATTCCTTGCCCTCACGTTTACCTCAATTATCGCATTTCCTGTAAAAGATAACCAAAATCTGTGAACTACATAAATGGTGCTGATATTATAACGCACATTTTATCAGTTAACAGATTTTTGATATCATTTATTAGAGCCGAGAAAATTGAGCTCAAAGTTAACACCTGCTGGAGACGCAGACAACTAAATGATCTCGCTTCTCTGCACTCTCTCCTTTTTACCCACTTTTTTTCTCTTTTAGAGACTCAGAGAAAAATACACTCTAGCTTCTCTATGCCCTCCTCTTGAATCTTTATACTTCTCCTAGACTCTAGAAAAAGTCCTAAAAAGCTCATTAAGTGCATTTCCTTCTTCTTTTTTGATTCCTCATTTTTTCATGGTCCACTTGAGAGAGAAGAAAAAGAGGCTTGTTTATATGACCACAAATTAGATCCGTGTTTTAGTTTTCYGAGGTCATGGAGCATACAGAAGAGAAGATCAAAAGGAGTTTCGAAACCTATTTTTTCCATTTTTGGCTCAAAAATTTAGGAGAGGCACGTAGGTGTTTTATTTGTTTGTGTGTATGAGCAATCCTGGATTAATCTGACTGGAGATTTATTTACAGATTTTTTCAGTTATGACGAATTTGTTGATTTCGAAATGGGAAACCAAGAAGAAGCCAAAAAATGATGTTTTAGGGTTTAAGAGGATAAGCGACTTTCAGTTTTGATGTGTCCATTTTTATCAGTGCTAAAAGTTAGTTGAGAATTTTTCAGTTTGTCTGAAAATTTCAGAGTATGCCAAACAAAAATAGAGCTTTTTTTGTAGTTAACAACTTTTTTGGGAAATTTTATCCAAATGAGATATACCGCCTGGAATCAATAAGCCCTGAAAGGAGAGTCGTGGAACTTTAAAGACGTTTACCTAGTTTTGTTGGATTTTCACAAACAGTTGTCAACTACAAAATTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAAAAGTCCTAAAAAGCTCAT</pcr_primer_p1>
		<pcr_primer_p2>ACACACAAACAAATAAAACACCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAAAAGTCCTAAAAAGCTCATTAAGTGCATTTCCTTCTTCTTTTTTGATTCCTCATTTTTTCATGGTCCACTTGAGAGAGAAGAAAAAGAGGCTTGTTTATATGACCACAAATTAGATCCGTGTTTTAGTTTTCCGAGGTCATGGAGCATACAGAAGAGAAGATCAAAAGGAGTTTCGAAACCTATTTTTTCCATTTTTGGCTCAAAAATTTAGGAGAGGCACGTAGGTGTTTTATTTGTTTGTGTGT</canonical_amplicon>
		<polymorphic_amplicon>AGAAAAAGTCCTAAAAAGCTCATTAAGTGCATTTCCTTCTTCTTTTTTGATTCCTCATTTTTTCATGGTCCACTTGAGAGAGAAGAAAAAGAGGCTTGTTTATATGACCACAAATTAGATCCGTGTTTTAGTTTTCYGAGGTCATGGAGCATACAGAAGAGAAGATCAAAAGGAGTTTCGAAACCTATTTTTTCCATTTTTGGCTCAAAAATTTAGGAGAGGCACGTAGGTGTTTTATTTGTTTGTGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb409</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>27884</contig_pos>
        <strand></strand>
        <context>GATTAATCTG[A/G]CTGGAGATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGTAGGTGTTTTATTTGTTTGTGTGTATGAGCAATCCTGGATTAATCTG</left_flank>
        <right_flank>CTGGAGATTTATTTACAGATTTTTTCAGTTATGACGAATTTGTTGATTTC</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATAACGCACATTTTATCAGTTAACAGATTTTTGATATCATTTATTAGAGCCGAGAAAATTGAGCTCAAAGTTAACACCTGCTGGAGACGCAGACAACTAAATGATCTCGCTTCTCTGCACTCTCTCCTTTTTACCCACTTTTTTTCTCTTTTAGAGACTCAGAGAAAAATACACTCTAGCTTCTCTATGCCCTCCTCTTGAATCTTTATACTTCTCCTAGACTCTAGAAAAAGTCCTAAAAAGCTCATTAAGTGCATTTCCTTCTTCTTTTTTGATTCCTCATTTTTTCATGGTCCACTTGAGAGAGAAGAAAAAGAGGCTTGTTTATATGACCACAAATTAGATCCGTGTTTTAGTTTTCCGAGGTCATGGAGCATACAGAAGAGAAGATCAAAAGGAGTTTCGAAACCTATTTTTTCCATTTTTGGCTCAAAAATTTAGGAGAGGCACGTAGGTGTTTTATTTGTTTGTGTGTATGAGCAATCCTGGATTAATCTGACTGGAGATTTATTTACAGATTTTTTCAGTTATGACGAATTTGTTGATTTCGAAATGGGAAACCAAGAAGAAGCCAAAAAATGATGTTTTAGGGTTTAAGAGGATAAGCGACTTTCAGTTTTGATGTGTCCATTTTTATCAGTGCTAAAAGTTAGTTGAGAATTTTTCAGTTTGTCTGAAAATTTCAGAGTATGCCAAACAAAAATAGAGCTTTTTTTGTAGTTAACAACTTTTTTGGGAAATTTTATCCAAATGAGATATACCGCCTGGAATCAATAAGCCCTGAAAGGAGAGTCGTGGAACTTTAAAGACGTTTACCTAGTTTTGTTGGATTTTCACAAACAGTTGTCAACTACAAAATTAAAGCTCTATTTTTGTTTAGTGTAGTCTGAAAATTTCAGACAAATTGAAAATTTTTGAAGTATTATAGTTTTGTATGAGTCCAAACTTAACGTACTAGCTCATAGAAGCCCATTCCATACTGGAACTTAGAGCTCAATT</canonical>
            <polymorphic>TATAACGCACATTTTATCAGTTAACAGATTTTTGATATCATTTATTAGAGCCGAGAAAATTGAGCTCAAAGTTAACACCTGCTGGAGACGCAGACAACTAAATGATCTCGCTTCTCTGCACTCTCTCCTTTTTACCCACTTTTTTTCTCTTTTAGAGACTCAGAGAAAAATACACTCTAGCTTCTCTATGCCCTCCTCTTGAATCTTTATACTTCTCCTAGACTCTAGAAAAAGTCCTAAAAAGCTCATTAAGTGCATTTCCTTCTTCTTTTTTGATTCCTCATTTTTTCATGGTCCACTTGAGAGAGAAGAAAAAGAGGCTTGTTTATATGACCACAAATTAGATCCGTGTTTTAGTTTTCCGAGGTCATGGAGCATACAGAAGAGAAGATCAAAAGGAGTTTCGAAACCTATTTTTTCCATTTTTGGCTCAAAAATTTAGGAGAGGCACGTAGGTGTTTTATTTGTTTGTGTGTATGAGCAATCCTGGATTAATCTGRCTGGAGATTTATTTACAGATTTTTTCAGTTATGACGAATTTGTTGATTTCGAAATGGGAAACCAAGAAGAAGCCAAAAAATGATGTTTTAGGGTTTAAGAGGATAAGCGACTTTCAGTTTTGATGTGTCCATTTTTATCAGTGCTAAAAGTTAGTTGAGAATTTTTCAGTTTGTCTGAAAATTTCAGAGTATGCCAAACAAAAATAGAGCTTTTTTTGTAGTTAACAACTTTTTTGGGAAATTTTATCCAAATGAGATATACCGCCTGGAATCAATAAGCCCTGAAAGGAGAGTCGTGGAACTTTAAAGACGTTTACCTAGTTTTGTTGGATTTTCACAAACAGTTGTCAACTACAAAATTAAAGCTCTATTTTTGTTTAGTGTAGTCTGAAAATTTCAGACAAATTGAAAATTTTTGAAGTATTATAGTTTTGTATGAGTCCAAACTTAACGTACTAGCTCATAGAAGCCCATTCCATACTGGAACTTAGAGCTCAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>203 201 178 162 135 101 10 10</canonical_bands>
                <polymorphic_bands>313 203 201 162 101 10 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCATACAGAAGAGAAGATCAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATCAAAACTGAAAGTCGCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCATACAGAAGAGAAGATCAAAAGGAGTTTCGAAACCTATTTTTTCCATTTTTGGCTCAAAAATTTAGGAGAGGCACGTAGGTGTTTTATTTGTTTGTGTGTATGAGCAATCCTGGATTAATCTGACTGGAGATTTATTTACAGATTTTTTCAGTTATGACGAATTTGTTGATTTCGAAATGGGAAACCAAGAAGAAGCCAAAAAATGATGTTTTAGGGTTTAAGAGGATAAGCGACTTTCAGTTTTGAT</canonical_amplicon>
		<polymorphic_amplicon>GCATACAGAAGAGAAGATCAAAAGGAGTTTCGAAACCTATTTTTTCCATTTTTGGCTCAAAAATTTAGGAGAGGCACGTAGGTGTTTTATTTGTTTGTGTGTATGAGCAATCCTGGATTAATCTGRCTGGAGATTTATTTACAGATTTTTTCAGTTATGACGAATTTGTTGATTTCGAAATGGGAAACCAAGAAGAAGCCAAAAAATGATGTTTTAGGGTTTAAGAGGATAAGCGACTTTCAGTTTTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb410</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>30079</contig_pos>
        <strand>+</strand>
        <context>CCTTTGGGGC[C/T]CAGGAAGAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGTTTTGAAGTTCTGGTGCACCAACTGGGTTTCTTATTTCCTTTGGGGC</left_flank>
        <right_flank>CAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATCTTTTTCTTCTTCTTCTTCATCCTCTGGTTCTACATTTCCCATTAGAATAAGAAAACAGCGAGATGATTCAGAAGACGTGGGGCTTTTTTGCCGCCATTTTTTTTTCTGAAATTCAACACCTCATTATTCGTGTTTTGTGTTCGTAGTGCGTGGGGAGGAACGCCATTTTCAGACTTAATAAAAATTTCAGTTACCATTTTTATAGCAACATCCGCACCTAATCCCTTTTTCATCCTCACAAAAAACCTTTTCCAATCCCTTTTCAGCCTAGCTTTTTTAGATTTTTTTTGCAGATTTTTTCCTCATCACGTCAAGTTTGTTTACCTTTTTTGGATTTGAGCTAAGCTCCGCCCACTTTTTTCTCTAAGACCTTTTCACTCTTTCTGCCCATTTTTGATTGTTTACTTTGTGTTTGGCTTTTTCTTTCGCTCTTTTATTTGGGTCAGGTTTTGAAGTTCTGGTGCACCAACTGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAATTTATTTTTTTCCAACTTTTTTGGTGCTCTGGATCCTTTTCTACTTCCCAAGATGTTCTTTGATGGCG</canonical>
            <polymorphic>TCATCTTTTTCTTCTTCTTCTTCATCCTCTGGTTCTACATTTCCCATTAGAATAAGAAAACAGCGAGATGATTCAGAAGACGTGGGGCTTTTTTGCCGCCATTTTTTTTTCTGAAATTCAACACCTCATTATTCGTGTTTTGTGTTCGTAGTGCGTGGGGAGGAACGCCATTTTCAGACTTAATAAAAATTTCAGTTACCATTTTTATAGCAACATCCGCACCTAATCCCTTTTTCATCCTCACAAAAAACCTTTTCCAATCCCTTTTCAGCCTAGCTTTTTTAGATTTTTTTTGCAGATTTTTTCCTCATCACGTCAAGTTTGTTTACCTTTTTTGGATTTGAGCTAAGCTCCGCCCACTTTTTTCTCTAAGACCTTTTCACTCTTTCTGCCCATTTTTGATTGTTTACTTTGTGTTTGGCTTTTTCTTTCGCTCTTTTATTTGGGTCAGGTTTTGAAGTTCTGGTGCACCAACTGGGTTTCTTATTTCCTTTGGGGCYCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAATTTATTTTTTTCCAACTTTTTTGGTGCTCTGGATCCTTTTCTACTTCCCAAGATGTTCTTTGATGGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>500 268 232</canonical_bands>
                <polymorphic_bands>732 268</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>470 232 228 40 30</canonical_bands>
                <polymorphic_bands>470 262 228 40</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>346 183 161 157 130 23</canonical_bands>
                <polymorphic_bands>346 287 183 161 23</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>206 184 126 87 77 74 71 69 56 32 8 5 5</canonical_bands>
                <polymorphic_bands>206 184 151 126 87 71 69 56 32 8 5 5</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>501 460 39</canonical_bands>
                <polymorphic_bands>961 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTTATTTGGGTCAGGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGAAATATTTTGGAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>497</pcr_amplicon_size>
		<canonical_amplicon>CTTTTATTTGGGTCAGGTTTTGAAGTTCTGGTGCACCAACTGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>CTTTTATTTGGGTCAGGTTTTGAAGTTCTGGTGCACCAACTGGGTTTCTTATTTCCTTTGGGGCYCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb411</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>30054</contig_pos>
        <strand>+</strand>
        <context>GGTGCACCAA[C/G]TGGGTTTCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTCTTTCGCTCTTTTATTTGGGTCAGGTTTTGAAGTTCTGGTGCACCAA</left_flank>
        <right_flank>TGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTT</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTCTTCTTCCTATATCTTGCCCTCATCTTTTTCTTCTTCTTCTTCATCCTCTGGTTCTACATTTCCCATTAGAATAAGAAAACAGCGAGATGATTCAGAAGACGTGGGGCTTTTTTGCCGCCATTTTTTTTTCTGAAATTCAACACCTCATTATTCGTGTTTTGTGTTCGTAGTGCGTGGGGAGGAACGCCATTTTCAGACTTAATAAAAATTTCAGTTACCATTTTTATAGCAACATCCGCACCTAATCCCTTTTTCATCCTCACAAAAAACCTTTTCCAATCCCTTTTCAGCCTAGCTTTTTTAGATTTTTTTTGCAGATTTTTTCCTCATCACGTCAAGTTTGTTTACCTTTTTTGGATTTGAGCTAAGCTCCGCCCACTTTTTTCTCTAAGACCTTTTCACTCTTTCTGCCCATTTTTGATTGTTTACTTTGTGTTTGGCTTTTTCTTTCGCTCTTTTATTTGGGTCAGGTTTTGAAGTTCTGGTGCACCAACTGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAATTTATTTTTTTCCAACTTTTTTGGTGCTCTGGATCCTTTTCTA</canonical>
            <polymorphic>TTCTTCTTCTTCCTATATCTTGCCCTCATCTTTTTCTTCTTCTTCTTCATCCTCTGGTTCTACATTTCCCATTAGAATAAGAAAACAGCGAGATGATTCAGAAGACGTGGGGCTTTTTTGCCGCCATTTTTTTTTCTGAAATTCAACACCTCATTATTCGTGTTTTGTGTTCGTAGTGCGTGGGGAGGAACGCCATTTTCAGACTTAATAAAAATTTCAGTTACCATTTTTATAGCAACATCCGCACCTAATCCCTTTTTCATCCTCACAAAAAACCTTTTCCAATCCCTTTTCAGCCTAGCTTTTTTAGATTTTTTTTGCAGATTTTTTCCTCATCACGTCAAGTTTGTTTACCTTTTTTGGATTTGAGCTAAGCTCCGCCCACTTTTTTCTCTAAGACCTTTTCACTCTTTCTGCCCATTTTTGATTGTTTACTTTGTGTTTGGCTTTTTCTTTCGCTCTTTTATTTGGGTCAGGTTTTGAAGTTCTGGTGCACCAASTGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAATTTATTTTTTTCCAACTTTTTTGGTGCTCTGGATCCTTTTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTTCTTTCGCTCTTTTATTT</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGAAATATTTTGGAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>511</pcr_amplicon_size>
		<canonical_amplicon>CTTTTTCTTTCGCTCTTTTATTTGGGTCAGGTTTTGAAGTTCTGGTGCACCAACTGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>CTTTTTCTTTCGCTCTTTTATTTGGGTCAGGTTTTGAAGTTCTGGTGCACCAASTGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb412</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>30036</contig_pos>
        <strand>+</strand>
        <context>GTCAGGTTTT[A/G]AAGTTCTGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTACTTTGTGTTTGGCTTTTTCTTTCGCTCTTTTATTTGGGTCAGGTTTT</left_flank>
        <right_flank>AAGTTCTGGTGCACCAACTGGGTTTCTTATTTCCTTTGGGGCTCAGGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACGTCATCACCTATTCTTCTTCTTCTTCCTATATCTTGCCCTCATCTTTTTCTTCTTCTTCTTCATCCTCTGGTTCTACATTTCCCATTAGAATAAGAAAACAGCGAGATGATTCAGAAGACGTGGGGCTTTTTTGCCGCCATTTTTTTTTCTGAAATTCAACACCTCATTATTCGTGTTTTGTGTTCGTAGTGCGTGGGGAGGAACGCCATTTTCAGACTTAATAAAAATTTCAGTTACCATTTTTATAGCAACATCCGCACCTAATCCCTTTTTCATCCTCACAAAAAACCTTTTCCAATCCCTTTTCAGCCTAGCTTTTTTAGATTTTTTTTGCAGATTTTTTCCTCATCACGTCAAGTTTGTTTACCTTTTTTGGATTTGAGCTAAGCTCCGCCCACTTTTTTCTCTAAGACCTTTTCACTCTTTCTGCCCATTTTTGATTGTTTACTTTGTGTTTGGCTTTTTCTTTCGCTCTTTTATTTGGGTCAGGTTTTGAAGTTCTGGTGCACCAACTGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAATTTATTTTTTTCCAACTTTTTTGGT</canonical>
            <polymorphic>CCACGTCATCACCTATTCTTCTTCTTCTTCCTATATCTTGCCCTCATCTTTTTCTTCTTCTTCTTCATCCTCTGGTTCTACATTTCCCATTAGAATAAGAAAACAGCGAGATGATTCAGAAGACGTGGGGCTTTTTTGCCGCCATTTTTTTTTCTGAAATTCAACACCTCATTATTCGTGTTTTGTGTTCGTAGTGCGTGGGGAGGAACGCCATTTTCAGACTTAATAAAAATTTCAGTTACCATTTTTATAGCAACATCCGCACCTAATCCCTTTTTCATCCTCACAAAAAACCTTTTCCAATCCCTTTTCAGCCTAGCTTTTTTAGATTTTTTTTGCAGATTTTTTCCTCATCACGTCAAGTTTGTTTACCTTTTTTGGATTTGAGCTAAGCTCCGCCCACTTTTTTCTCTAAGACCTTTTCACTCTTTCTGCCCATTTTTGATTGTTTACTTTGTGTTTGGCTTTTTCTTTCGCTCTTTTATTTGGGTCAGGTTTTRAAGTTCTGGTGCACCAACTGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAATTTATTTTTTTCCAACTTTTTTGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGATTGTTTACTTTGTGTTTG</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGAAATATTTTGGAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>535</pcr_amplicon_size>
		<canonical_amplicon>TTTGATTGTTTACTTTGTGTTTGGCTTTTTCTTTCGCTCTTTTATTTGGGTCAGGTTTTGAAGTTCTGGTGCACCAACTGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TTTGATTGTTTACTTTGTGTTTGGCTTTTTCTTTCGCTCTTTTATTTGGGTCAGGTTTTRAAGTTCTGGTGCACCAACTGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb413</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>30535</contig_pos>
        <strand></strand>
        <context>AACTTTTTTG[G/A]TGCTCTGGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTACAGTTTCCAAAATATTTCTTCAATTTATTTTTTTCCAACTTTTTTG</left_flank>
        <right_flank>TGCTCTGGATCCTTTTCTACTTCCCAAGATGTTCTTTGATGGCGTTGTCC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGTTCTGGTGCACCAACTGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAATTTATTTTTTTCCAACTTTTTTGGTGCTCTGGATCCTTTTCTACTTCCCAAGATGTTCTTTGATGGCGTTGTCCTTCCTCGAAAAGTGTCTCCTCAAGAATATTTGTCCCACGTCACACAAAAGAAGAAGGAGTTGTCAATCACAGACACTTCCTTACATTCGCACTTACTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCGATTTTTTTATTCTGTCACTTTGTGTTTCCATTAAACACTTCTGTTTCTGAATCCCTTCCGAATATTTTAGGAGATGGATCATTAAGAATGTATGGAGAAAAAGATTAGATTGAGGGAAGTGATTTAGGAGGCAAAAAAACTTCCGTACTTCTTACCTTTTTGGTTTGCAAAGGGTTACTGTAGTCTTAAAGGCGCACATCTTGTTTAATATACTTTTTGCTAGCTCTG</canonical>
            <polymorphic>GAAGTTCTGGTGCACCAACTGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAATTTATTTTTTTCCAACTTTTTTGRTGCTCTGGATCCTTTTCTACTTCCCAAGATGTTCTTTGATGGCGTTGTCCTTCCTCGAAAAGTGTCTCCTCAAGAATATTTGTCCCACGTCACACAAAAGAAGAAGGAGTTGTCAATCACAGACACTTCCTTACATTCGCACTTACTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCGATTTTTTTATTCTGTCACTTTGTGTTTCCATTAAACACTTCTGTTTCTGAATCCCTTCCGAATATTTTAGGAGATGGATCATTAAGAATGTATGGAGAAAAAGATTAGATTGAGGGAAGTGATTTAGGAGGCAAAAAAACTTCCGTACTTCTTACCTTTTTGGTTTGCAAAGGGTTACTGTAGTCTTAAAGGCGCACATCTTGTTTAATATACTTTTTGCTAGCTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>496 490 14</canonical_bands>
                <polymorphic_bands>986 14</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>496 232 228 30 14</canonical_bands>
                <polymorphic_bands>724 232 30 14</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>235 148 130 84 75 73 62 48 32 25 23 16 13 12 7 6 5 2 2 2</canonical_bands>
                <polymorphic_bands>235 192 148 84 75 73 48 32 25 23 16 13 12 7 6 5 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGGTTTCTTATTTCCTTTG</pcr_primer_p1>
		<pcr_primer_p2>ACTTTTCGAGGAAGGACAAC</pcr_primer_p2>
		<pcr_amplicon_size>544</pcr_amplicon_size>
		<canonical_amplicon>TGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAATTTATTTTTTTCCAACTTTTTTGGTGCTCTGGATCCTTTTCTACTTCCCAAGATGTTCTTTGATGGCGTTGTCCTTCCTCGAAAAGT</canonical_amplicon>
		<polymorphic_amplicon>TGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAATTTATTTTTTTCCAACTTTTTTGRTGCTCTGGATCCTTTTCTACTTCCCAAGATGTTCTTTGATGGCGTTGTCCTTCCTCGAAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb414</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>31941</contig_pos>
        <strand>+</strand>
        <context>GTCAGATTTT[C/T]TGGGGTTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTTTTAGACACCAACTCGATTTGGCGGCTCCATTTGACGTCAGATTTT</left_flank>
        <right_flank>TGGGGTTTCTTTCTCATGAATTTTTGAAGAATTTAATGGATTTTTCTGGA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTAAACTCTCCCCAAAATCCAAAATCCCATAAATCCTTTCAGATCAATCTCAGATCATGACGATCAAAAAAGTAAATGAATCCTTCCAGATTACCCTTTTCTTGTGACGTCTCCGGACTTCCAGATTACCACGTCTTCAATGAAGACGTCACGGTGGCAACCCAAGATACTTTTTAAAAATTATATCATCATATTTATTAATAGATCAACGACTAATCCCATGACACTGCCCCTTTAAAAAAACAACTTTTTTTTTGTTTTCTTAATTTCCGGATGTGTGTGTGTCTGTTTATCCGGATGTCCTTTTCCCAAGAAGGCCCAGACTAATGAACATAAGCCACTCTCTCTCTTTTAGACGAGTACATTTGCATTTCTTCCCCTCCGGCCAAAATAAGGAAAAGAGAAGAAACGAACCCTTTTCTCTTCTTCTTCTCCCATTTTTTTGCCTATTTTTAGACACCAACTCGATTTGGCGGCTCCATTTGACGTCAGATTTTTTGGGGTTTCTTTCTCATGAATTTTTGAAGAATTTAATGGATTTTTCTGGAAACCGATTCTCAGAAACTTCACGAATTCTGTGTACATTTTTTTTGGAAATTTTAATTAGTTTTGTTTTTTTTTGTGGTTGACAAGGATTTCTGGAGAATAGCCGGGTTTTGGAGGCACAAAAACATAGCTATAAATGGAAGGAAGAATTCTATAGTTTTGCAGATAGAATAATTTAAAGGCGCATATCTCAAAAACCACCTAACAATATTGCTAAGCATAAAATTCTACACATTTTGTTAGTTTACAGCTTTTTGCTAGATTCGATTGTTTTTGAGTTATGCGCCTTTAAAGTTACGGTACCCCTCCAGAGCGCATGTTCCATCTTTAAAGGCGCATATCTCAAAAACTAAAATAGCTAGAAAATTTTTGACACTATCCGAATGTGTGAAATATTACGCTGAGCAATGTTGCAGTTGACAACGTTTTATTAGCTTTGATAGTTTTGAAGA</canonical>
            <polymorphic>TTTTAAACTCTCCCCAAAATCCAAAATCCCATAAATCCTTTCAGATCAATCTCAGATCATGACGATCAAAAAAGTAAATGAATCCTTCCAGATTACCCTTTTCTTGTGACGTCTCCGGACTTCCAGATTACCACGTCTTCAATGAAGACGTCACGGTGGCAACCCAAGATACTTTTTAAAAATTATATCATCATATTTATTAATAGATCAACGACTAATCCCATGACACTGCCCCTTTAAAAAAACAACTTTTTTTTTGTTTTCTTAATTTCCGGATGTGTGTGTGTCTGTTTATCCGGATGTCCTTTTCCCAAGAAGGCCCAGACTAATGAACATAAGCCACTCTCTCTCTTTTAGACGAGTACATTTGCATTTCTTCCCCTCCGGCCAAAATAAGGAAAAGAGAAGAAACGAACCCTTTTCTCTTCTTCTTCTCCCATTTTTTTGCCTATTTTTAGACACCAACTCGATTTGGCGGCTCCATTTGACGTCAGATTTTYTGGGGTTTCTTTCTCATGAATTTTTGAAGAATTTAATGGATTTTTCTGGAAACCGATTCTCAGAAACTTCACGAATTCTGTGTACATTTTTTTTGGAAATTTTAATTAGTTTTGTTTTTTTTTGTGGTTGACAAGGATTTCTGGAGAATAGCCGGGTTTTGGAGGCACAAAAACATAGCTATAAATGGAAGGAAGAATTCTATAGTTTTGCAGATAGAATAATTTAAAGGCGCATATCTCAAAAACCACCTAACAATATTGCTAAGCATAAAATTCTACACATTTTGTTAGTTTACAGCTTTTTGCTAGATTCGATTGTTTTTGAGTTATGCGCCTTTAAAGTTACGGTACCCCTCCAGAGCGCATGTTCCATCTTTAAAGGCGCATATCTCAAAAACTAAAATAGCTAGAAAATTTTTGACACTATCCGAATGTGTGAAATATTACGCTGAGCAATGTTGCAGTTGACAACGTTTTATTAGCTTTGATAGTTTTGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCCTATTTTTAGACACCAACT</pcr_primer_p1>
		<pcr_primer_p2>CTTCCTTCCATTTATAGCTATGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGCCTATTTTTAGACACCAACTCGATTTGGCGGCTCCATTTGACGTCAGATTTTTTGGGGTTTCTTTCTCATGAATTTTTGAAGAATTTAATGGATTTTTCTGGAAACCGATTCTCAGAAACTTCACGAATTCTGTGTACATTTTTTTTGGAAATTTTAATTAGTTTTGTTTTTTTTTGTGGTTGACAAGGATTTCTGGAGAATAGCCGGGTTTTGGAGGCACAAAAACATAGCTATAAATGGAAGGAAG</canonical_amplicon>
		<polymorphic_amplicon>TGCCTATTTTTAGACACCAACTCGATTTGGCGGCTCCATTTGACGTCAGATTTTYTGGGGTTTCTTTCTCATGAATTTTTGAAGAATTTAATGGATTTTTCTGGAAACCGATTCTCAGAAACTTCACGAATTCTGTGTACATTTTTTTTGGAAATTTTAATTAGTTTTGTTTTTTTTTGTGGTTGACAAGGATTTCTGGAGAATAGCCGGGTTTTGGAGGCACAAAAACATAGCTATAAATGGAAGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb415</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>31993</contig_pos>
        <strand>+</strand>
        <context>TTTTCTGGAA[A/G]CCGATTCTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGGTTTCTTTCTCATGAATTTTTGAAGAATTTAATGGATTTTTCTGGAA</left_flank>
        <right_flank>CCGATTCTCAGAAACTTCACGAATTCTGTGTACATTTTTTTTGGAAATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGATCATGACGATCAAAAAAGTAAATGAATCCTTCCAGATTACCCTTTTCTTGTGACGTCTCCGGACTTCCAGATTACCACGTCTTCAATGAAGACGTCACGGTGGCAACCCAAGATACTTTTTAAAAATTATATCATCATATTTATTAATAGATCAACGACTAATCCCATGACACTGCCCCTTTAAAAAAACAACTTTTTTTTTGTTTTCTTAATTTCCGGATGTGTGTGTGTCTGTTTATCCGGATGTCCTTTTCCCAAGAAGGCCCAGACTAATGAACATAAGCCACTCTCTCTCTTTTAGACGAGTACATTTGCATTTCTTCCCCTCCGGCCAAAATAAGGAAAAGAGAAGAAACGAACCCTTTTCTCTTCTTCTTCTCCCATTTTTTTGCCTATTTTTAGACACCAACTCGATTTGGCGGCTCCATTTGACGTCAGATTTTTTGGGGTTTCTTTCTCATGAATTTTTGAAGAATTTAATGGATTTTTCTGGAAACCGATTCTCAGAAACTTCACGAATTCTGTGTACATTTTTTTTGGAAATTTTAATTAGTTTTGTTTTTTTTTGTGGTTGACAAGGATTTCTGGAGAATAGCCGGGTTTTGGAGGCACAAAAACATAGCTATAAATGGAAGGAAGAATTCTATAGTTTTGCAGATAGAATAATTTAAAGGCGCATATCTCAAAAACCACCTAACAATATTGCTAAGCATAAAATTCTACACATTTTGTTAGTTTACAGCTTTTTGCTAGATTCGATTGTTTTTGAGTTATGCGCCTTTAAAGTTACGGTACCCCTCCAGAGCGCATGTTCCATCTTTAAAGGCGCATATCTCAAAAACTAAAATAGCTAGAAAATTTTTGACACTATCCGAATGTGTGAAATATTACGCTGAGCAATGTTGCAGTTGACAACGTTTTATTAGCTTTGATAGTTTTGAAGATATGCACCTTTAAAGATACTGTGCCCCTCCTCTTTTCCTCCTCCATCTTTAA</canonical>
            <polymorphic>CAGATCATGACGATCAAAAAAGTAAATGAATCCTTCCAGATTACCCTTTTCTTGTGACGTCTCCGGACTTCCAGATTACCACGTCTTCAATGAAGACGTCACGGTGGCAACCCAAGATACTTTTTAAAAATTATATCATCATATTTATTAATAGATCAACGACTAATCCCATGACACTGCCCCTTTAAAAAAACAACTTTTTTTTTGTTTTCTTAATTTCCGGATGTGTGTGTGTCTGTTTATCCGGATGTCCTTTTCCCAAGAAGGCCCAGACTAATGAACATAAGCCACTCTCTCTCTTTTAGACGAGTACATTTGCATTTCTTCCCCTCCGGCCAAAATAAGGAAAAGAGAAGAAACGAACCCTTTTCTCTTCTTCTTCTCCCATTTTTTTGCCTATTTTTAGACACCAACTCGATTTGGCGGCTCCATTTGACGTCAGATTTTTTGGGGTTTCTTTCTCATGAATTTTTGAAGAATTTAATGGATTTTTCTGGAARCCGATTCTCAGAAACTTCACGAATTCTGTGTACATTTTTTTTGGAAATTTTAATTAGTTTTGTTTTTTTTTGTGGTTGACAAGGATTTCTGGAGAATAGCCGGGTTTTGGAGGCACAAAAACATAGCTATAAATGGAAGGAAGAATTCTATAGTTTTGCAGATAGAATAATTTAAAGGCGCATATCTCAAAAACCACCTAACAATATTGCTAAGCATAAAATTCTACACATTTTGTTAGTTTACAGCTTTTTGCTAGATTCGATTGTTTTTGAGTTATGCGCCTTTAAAGTTACGGTACCCCTCCAGAGCGCATGTTCCATCTTTAAAGGCGCATATCTCAAAAACTAAAATAGCTAGAAAATTTTTGACACTATCCGAATGTGTGAAATATTACGCTGAGCAATGTTGCAGTTGACAACGTTTTATTAGCTTTGATAGTTTTGAAGATATGCACCTTTAAAGATACTGTGCCCCTCCTCTTTTCCTCCTCCATCTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCCTATTTTTAGACACCAACT</pcr_primer_p1>
		<pcr_primer_p2>CTTCCTTCCATTTATAGCTATGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGCCTATTTTTAGACACCAACTCGATTTGGCGGCTCCATTTGACGTCAGATTTTTTGGGGTTTCTTTCTCATGAATTTTTGAAGAATTTAATGGATTTTTCTGGAAACCGATTCTCAGAAACTTCACGAATTCTGTGTACATTTTTTTTGGAAATTTTAATTAGTTTTGTTTTTTTTTGTGGTTGACAAGGATTTCTGGAGAATAGCCGGGTTTTGGAGGCACAAAAACATAGCTATAAATGGAAGGAAG</canonical_amplicon>
		<polymorphic_amplicon>TGCCTATTTTTAGACACCAACTCGATTTGGCGGCTCCATTTGACGTCAGATTTTTTGGGGTTTCTTTCTCATGAATTTTTGAAGAATTTAATGGATTTTTCTGGAARCCGATTCTCAGAAACTTCACGAATTCTGTGTACATTTTTTTTGGAAATTTTAATTAGTTTTGTTTTTTTTTGTGGTTGACAAGGATTTCTGGAGAATAGCCGGGTTTTGGAGGCACAAAAACATAGCTATAAATGGAAGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb416</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>32020</contig_pos>
        <strand>+</strand>
        <context>TCACGAATTC[G/T]GKGTACATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAATTTAATGGATTTTTCTGGAAACCGATTCTCAGAAACTTCACGAATTC</left_flank>
        <right_flank>GTGTACATTTTTTTTGGAAATTTTAATTAGTTTTGTTTTTTTTTGTGGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATCCTTCCAGATTACCCTTTTCTTGTGACGTCTCCGGACTTCCAGATTACCACGTCTTCAATGAAGACGTCACGGTGGCAACCCAAGATACTTTTTAAAAATTATATCATCATATTTATTAATAGATCAACGACTAATCCCATGACACTGCCCCTTTAAAAAAACAACTTTTTTTTTGTTTTCTTAATTTCCGGATGTGTGTGTGTCTGTTTATCCGGATGTCCTTTTCCCAAGAAGGCCCAGACTAATGAACATAAGCCACTCTCTCTCTTTTAGACGAGTACATTTGCATTTCTTCCCCTCCGGCCAAAATAAGGAAAAGAGAAGAAACGAACCCTTTTCTCTTCTTCTTCTCCCATTTTTTTGCCTATTTTTAGACACCAACTCGATTTGGCGGCTCCATTTGACGTCAGATTTTTTGGGGTTTCTTTCTCATGAATTTTTGAAGAATTTAATGGATTTTTCTGGAAACCGATTCTCAGAAACTTCACGAATTCTGTGTACATTTTTTTTGGAAATTTTAATTAGTTTTGTTTTTTTTTGTGGTTGACAAGGATTTCTGGAGAATAGCCGGGTTTTGGAGGCACAAAAACATAGCTATAAATGGAAGGAAGAATTCTATAGTTTTGCAGATAGAATAATTTAAAGGCGCATATCTCAAAAACCACCTAACAATATTGCTAAGCATAAAATTCTACACATTTTGTTAGTTTACAGCTTTTTGCTAGATTCGATTGTTTTTGAGTTATGCGCCTTTAAAGTTACGGTACCCCTCCAGAGCGCATGTTCCATCTTTAAAGGCGCATATCTCAAAAACTAAAATAGCTAGAAAATTTTTGACACTATCCGAATGTGTGAAATATTACGCTGAGCAATGTTGCAGTTGACAACGTTTTATTAGCTTTGATAGTTTTGAAGATATGCACCTTTAAAGATACTGTGCCCCTCCTCTTTTCCTCCTCCATCTTTAAAGAGACAGGAGATTTTACGGGGGATTT</canonical>
            <polymorphic>GAATCCTTCCAGATTACCCTTTTCTTGTGACGTCTCCGGACTTCCAGATTACCACGTCTTCAATGAAGACGTCACGGTGGCAACCCAAGATACTTTTTAAAAATTATATCATCATATTTATTAATAGATCAACGACTAATCCCATGACACTGCCCCTTTAAAAAAACAACTTTTTTTTTGTTTTCTTAATTTCCGGATGTGTGTGTGTCTGTTTATCCGGATGTCCTTTTCCCAAGAAGGCCCAGACTAATGAACATAAGCCACTCTCTCTCTTTTAGACGAGTACATTTGCATTTCTTCCCCTCCGGCCAAAATAAGGAAAAGAGAAGAAACGAACCCTTTTCTCTTCTTCTTCTCCCATTTTTTTGCCTATTTTTAGACACCAACTCGATTTGGCGGCTCCATTTGACGTCAGATTTTTTGGGGTTTCTTTCTCATGAATTTTTGAAGAATTTAATGGATTTTTCTGGAAACCGATTCTCAGAAACTTCACGAATTCKGTGTACATTTTTTTTGGAAATTTTAATTAGTTTTGTTTTTTTTTGTGGTTGACAAGGATTTCTGGAGAATAGCCGGGTTTTGGAGGCACAAAAACATAGCTATAAATGGAAGGAAGAATTCTATAGTTTTGCAGATAGAATAATTTAAAGGCGCATATCTCAAAAACCACCTAACAATATTGCTAAGCATAAAATTCTACACATTTTGTTAGTTTACAGCTTTTTGCTAGATTCGATTGTTTTTGAGTTATGCGCCTTTAAAGTTACGGTACCCCTCCAGAGCGCATGTTCCATCTTTAAAGGCGCATATCTCAAAAACTAAAATAGCTAGAAAATTTTTGACACTATCCGAATGTGTGAAATATTACGCTGAGCAATGTTGCAGTTGACAACGTTTTATTAGCTTTGATAGTTTTGAAGATATGCACCTTTAAAGATACTGTGCCCCTCCTCTTTTCCTCCTCCATCTTTAAAGAGACAGGAGATTTTACGGGGGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCCTATTTTTAGACACCAACT</pcr_primer_p1>
		<pcr_primer_p2>CTTCCTTCCATTTATAGCTATGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGCCTATTTTTAGACACCAACTCGATTTGGCGGCTCCATTTGACGTCAGATTTTTTGGGGTTTCTTTCTCATGAATTTTTGAAGAATTTAATGGATTTTTCTGGAAACCGATTCTCAGAAACTTCACGAATTCTGTGTACATTTTTTTTGGAAATTTTAATTAGTTTTGTTTTTTTTTGTGGTTGACAAGGATTTCTGGAGAATAGCCGGGTTTTGGAGGCACAAAAACATAGCTATAAATGGAAGGAAG</canonical_amplicon>
		<polymorphic_amplicon>TGCCTATTTTTAGACACCAACTCGATTTGGCGGCTCCATTTGACGTCAGATTTTTTGGGGTTTCTTTCTCATGAATTTTTGAAGAATTTAATGGATTTTTCTGGAAACCGATTCTCAGAAACTTCACGAATTCKGTGTACATTTTTTTTGGAAATTTTAATTAGTTTTGTTTTTTTTTGTGGTTGACAAGGATTTCTGGAGAATAGCCGGGTTTTGGAGGCACAAAAACATAGCTATAAATGGAAGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb417</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>32022</contig_pos>
        <strand>+</strand>
        <context>ACGAATTCKG[G/T]GTACATTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTAATGGATTTTTCTGGAAACCGATTCTCAGAAACTTCACGAATTCTG</left_flank>
        <right_flank>GTACATTTTTTTTGGAAATTTTAATTAGTTTTGTTTTTTTTTGTGGTTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCTTCCAGATTACCCTTTTCTTGTGACGTCTCCGGACTTCCAGATTACCACGTCTTCAATGAAGACGTCACGGTGGCAACCCAAGATACTTTTTAAAAATTATATCATCATATTTATTAATAGATCAACGACTAATCCCATGACACTGCCCCTTTAAAAAAACAACTTTTTTTTTGTTTTCTTAATTTCCGGATGTGTGTGTGTCTGTTTATCCGGATGTCCTTTTCCCAAGAAGGCCCAGACTAATGAACATAAGCCACTCTCTCTCTTTTAGACGAGTACATTTGCATTTCTTCCCCTCCGGCCAAAATAAGGAAAAGAGAAGAAACGAACCCTTTTCTCTTCTTCTTCTCCCATTTTTTTGCCTATTTTTAGACACCAACTCGATTTGGCGGCTCCATTTGACGTCAGATTTTTTGGGGTTTCTTTCTCATGAATTTTTGAAGAATTTAATGGATTTTTCTGGAAACCGATTCTCAGAAACTTCACGAATTCTGTGTACATTTTTTTTGGAAATTTTAATTAGTTTTGTTTTTTTTTGTGGTTGACAAGGATTTCTGGAGAATAGCCGGGTTTTGGAGGCACAAAAACATAGCTATAAATGGAAGGAAGAATTCTATAGTTTTGCAGATAGAATAATTTAAAGGCGCATATCTCAAAAACCACCTAACAATATTGCTAAGCATAAAATTCTACACATTTTGTTAGTTTACAGCTTTTTGCTAGATTCGATTGTTTTTGAGTTATGCGCCTTTAAAGTTACGGTACCCCTCCAGAGCGCATGTTCCATCTTTAAAGGCGCATATCTCAAAAACTAAAATAGCTAGAAAATTTTTGACACTATCCGAATGTGTGAAATATTACGCTGAGCAATGTTGCAGTTGACAACGTTTTATTAGCTTTGATAGTTTTGAAGATATGCACCTTTAAAGATACTGTGCCCCTCCTCTTTTCCTCCTCCATCTTTAAAGAGACAGGAGATTTTACGGGGGATTTTT</canonical>
            <polymorphic>ATCCTTCCAGATTACCCTTTTCTTGTGACGTCTCCGGACTTCCAGATTACCACGTCTTCAATGAAGACGTCACGGTGGCAACCCAAGATACTTTTTAAAAATTATATCATCATATTTATTAATAGATCAACGACTAATCCCATGACACTGCCCCTTTAAAAAAACAACTTTTTTTTTGTTTTCTTAATTTCCGGATGTGTGTGTGTCTGTTTATCCGGATGTCCTTTTCCCAAGAAGGCCCAGACTAATGAACATAAGCCACTCTCTCTCTTTTAGACGAGTACATTTGCATTTCTTCCCCTCCGGCCAAAATAAGGAAAAGAGAAGAAACGAACCCTTTTCTCTTCTTCTTCTCCCATTTTTTTGCCTATTTTTAGACACCAACTCGATTTGGCGGCTCCATTTGACGTCAGATTTTTTGGGGTTTCTTTCTCATGAATTTTTGAAGAATTTAATGGATTTTTCTGGAAACCGATTCTCAGAAACTTCACGAATTCTGKGTACATTTTTTTTGGAAATTTTAATTAGTTTTGTTTTTTTTTGTGGTTGACAAGGATTTCTGGAGAATAGCCGGGTTTTGGAGGCACAAAAACATAGCTATAAATGGAAGGAAGAATTCTATAGTTTTGCAGATAGAATAATTTAAAGGCGCATATCTCAAAAACCACCTAACAATATTGCTAAGCATAAAATTCTACACATTTTGTTAGTTTACAGCTTTTTGCTAGATTCGATTGTTTTTGAGTTATGCGCCTTTAAAGTTACGGTACCCCTCCAGAGCGCATGTTCCATCTTTAAAGGCGCATATCTCAAAAACTAAAATAGCTAGAAAATTTTTGACACTATCCGAATGTGTGAAATATTACGCTGAGCAATGTTGCAGTTGACAACGTTTTATTAGCTTTGATAGTTTTGAAGATATGCACCTTTAAAGATACTGTGCCCCTCCTCTTTTCCTCCTCCATCTTTAAAGAGACAGGAGATTTTACGGGGGATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGTACA</site>
                <isoschizomers>
                    <enzyme>AauI</enzyme>
                    <enzyme>Bsp1407I</enzyme>
                    <enzyme>BsrGI</enzyme>
                    <enzyme>SspBI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>143 119 110 81 70 68 58 56 52 44 41 32 27 25 20 17 13 11 5 2 2 2 2</canonical_bands>
                <polymorphic_bands>143 119 110 81 70 68 58 56 55 52 41 32 27 25 20 17 13 5 2 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 173 164 115 47</canonical_bands>
                <polymorphic_bands>548 173 164 115</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 280 220</canonical_bands>
                <polymorphic_bands>720 280</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCCTATTTTTAGACACCAACT</pcr_primer_p1>
		<pcr_primer_p2>CTTCCTTCCATTTATAGCTATGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGCCTATTTTTAGACACCAACTCGATTTGGCGGCTCCATTTGACGTCAGATTTTTTGGGGTTTCTTTCTCATGAATTTTTGAAGAATTTAATGGATTTTTCTGGAAACCGATTCTCAGAAACTTCACGAATTCTGTGTACATTTTTTTTGGAAATTTTAATTAGTTTTGTTTTTTTTTGTGGTTGACAAGGATTTCTGGAGAATAGCCGGGTTTTGGAGGCACAAAAACATAGCTATAAATGGAAGGAAG</canonical_amplicon>
		<polymorphic_amplicon>TGCCTATTTTTAGACACCAACTCGATTTGGCGGCTCCATTTGACGTCAGATTTTTTGGGGTTTCTTTCTCATGAATTTTTGAAGAATTTAATGGATTTTTCTGGAAACCGATTCTCAGAAACTTCACGAATTCTGKGTACATTTTTTTTGGAAATTTTAATTAGTTTTGTTTTTTTTTGTGGTTGACAAGGATTTCTGGAGAATAGCCGGGTTTTGGAGGCACAAAAACATAGCTATAAATGGAAGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb419</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>33412</contig_pos>
        <strand>+</strand>
        <context>TGAGTCTAAT[C/T]TTTTCataga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAGACTTCAGATGATGGAAGTGAGATTTCGAGAAATAAGTGAGTCTAAT</left_flank>
        <right_flank>TTTTCATAGAAGCCCTCAAAAACCGTCAACTTTGAGCTCAATTATCTCGA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCCAGATATCCATGTTGTTTGCAATCCGAGTAGAACTGAATAAATGAGGTCTTGAGGTCCTCAAGGATGTCACGAGAAATGAAAAATGCATTGCAACTTTTTTTCCTTCTCTTGTGACCTTCTTCTTTTTGCATTTGATTCCTTCCTTTTCGAAACTTGATCCTTTAAACTCCGTTCCCACGTTCCGAATTAGCAGCGCTAATTTGGAACTCTCTGACTCCGCCCCTTTAAGCTCCGCCTACTTTCTTCCAAGGCTCTCAAGCCCATTCACTCCTTTATACTTGCAGAAATGCCGCGCCGCAACCCATTATGGCTTCGTCTACCCGGATCATCCTCCCCATCATCCTCATCTACTACCGAGGAGCTCCGATTGGCAGCTCTTTCCCCGTATAACAACCCAAATGATGAGACCTCATCTATCCCAGATTCCATGGAACATTCTCCAGCGAAGACTTCAGATGATGGAAGTGAGATTTCGAGAAATAAGTGAGTCTAATCTTTTCATAGAAGCCCTCAAAAACCGTCAACTTTGAGCTCAATTATCTCGACTCCTTTGCAAGATATCAAAAATGTGTCAACTGATAGAATGTTTATAATTTTATGATAAAAAATTTATCAGTTGATAATTTTCCTATATCTTTCCGAGATATATGGGCTCAAAGTTGACGGTTTGGGTGGGCTTCTCGAGTGTTTACGGTATCTTGACCCCCCTTATTTTTCAGCTTCAACTCTCCGACCAGCTCGCCATCCCGTTCTCCGAACAAGAAAGTGTCATGGTCCCTATTCGACCAGGTTTCCCTGTCTGGAGAGGAATTTCTACTTCCTCGACGCTTTGAAGCGATTGAGTTGATTCCTGGAACCAGCACCCGAACCACATGTGCCTCCTGCTCTGCCACTGATCTTCTCGAGAGTGAACATGTCACAATTCGAAAGATTTCGCTTCAAGACCCAGCTACAGCCCGGAAGGAGTACCGGAATATCATTCTTTGCCGTCTTCT</canonical>
            <polymorphic>AACCCAGATATCCATGTTGTTTGCAATCCGAGTAGAACTGAATAAATGAGGTCTTGAGGTCCTCAAGGATGTCACGAGAAATGAAAAATGCATTGCAACTTTTTTTCCTTCTCTTGTGACCTTCTTCTTTTTGCATTTGATTCCTTCCTTTTCGAAACTTGATCCTTTAAACTCCGTTCCCACGTTCCGAATTAGCAGCGCTAATTTGGAACTCTCTGACTCCGCCCCTTTAAGCTCCGCCTACTTTCTTCCAAGGCTCTCAAGCCCATTCACTCCTTTATACTTGCAGAAATGCCGCGCCGCAACCCATTATGGCTTCGTCTACCCGGATCATCCTCCCCATCATCCTCATCTACTACCGAGGAGCTCCGATTGGCAGCTCTTTCCCCGTATAACAACCCAAATGATGAGACCTCATCTATCCCAGATTCCATGGAACATTCTCCAGCGAAGACTTCAGATGATGGAAGTGAGATTTCGAGAAATAAGTGAGTCTAATYTTTTCATAGAAGCCCTCAAAAACCGTCAACTTTGAGCTCAATTATCTCGACTCCTTTGCAAGATATCAAAAATGTGTCAACTGATAGAATGTTTATAATTTTATGATAAAAAATTTATCAGTTGATAATTTTCCTATATCTTTCCGAGATATATGGGCTCAAAGTTGACGGTTTGGGTGGGCTTCTCGAGTGTTTACGGTATCTTGACCCCCCTTATTTTTCAGCTTCAACTCTCCGACCAGCTCGCCATCCCGTTCTCCGAACAAGAAAGTGTCATGGTCCCTATTCGACCAGGTTTCCCTGTCTGGAGAGGAATTTCTACTTCCTCGACGCTTTGAAGCGATTGAGTTGATTCCTGGAACCAGCACCCGAACCACATGTGCCTCCTGCTCTGCCACTGATCTTCTCGAGAGTGAACATGTCACAATTCGAAAGATTTCGCTTCAAGACCCAGCTACAGCCCGGAAGGAGTACCGGAATATCATTCTTTGCCGTCTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCGAAGACTTCAGATGAT</pcr_primer_p1>
		<pcr_primer_p2>GAGTTGAAGCTGAAAAATAAGG</pcr_primer_p2>
		<pcr_amplicon_size>288</pcr_amplicon_size>
		<canonical_amplicon>CAGCGAAGACTTCAGATGATGGAAGTGAGATTTCGAGAAATAAGTGAGTCTAATCTTTTCATAGAAGCCCTCAAAAACCGTCAACTTTGAGCTCAATTATCTCGACTCCTTTGCAAGATATCAAAAATGTGTCAACTGATAGAATGTTTATAATTTTATGATAAAAAATTTATCAGTTGATAATTTTCCTATATCTTTCCGAGATATATGGGCTCAAAGTTGACGGTTTGGGTGGGCTTCTCGAGTGTTTACGGTATCTTGACCCCCCTTATTTTTCAGCTTCAACTC</canonical_amplicon>
		<polymorphic_amplicon>CAGCGAAGACTTCAGATGATGGAAGTGAGATTTCGAGAAATAAGTGAGTCTAATYTTTTCATAGAAGCCCTCAAAAACCGTCAACTTTGAGCTCAATTATCTCGACTCCTTTGCAAGATATCAAAAATGTGTCAACTGATAGAATGTTTATAATTTTATGATAAAAAATTTATCAGTTGATAATTTTCCTATATCTTTCCGAGATATATGGGCTCAAAGTTGACGGTTTGGGTGGGCTTCTCGAGTGTTTACGGTATCTTGACCCCCCTTATTTTTCAGCTTCAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb420</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>33646</contig_pos>
        <strand>+</strand>
        <context>GCTTCAACTC[A/T]CCGACCAGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTCGAGTGTTTACGGTATCTTGACCCCCCTTATTTTTCAGCTTCAACTC</left_flank>
        <right_flank>CCGACCAGCTCGCCATCCCGTTCTCCGAACAAGAAAGTGTCATGGTCCCT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCGCCTACTTTCTTCCAAGGCTCTCAAGCCCATTCACTCCTTTATACTTGCAGAAATGCCGCGCCGCAACCCATTATGGCTTCGTCTACCCGGATCATCCTCCCCATCATCCTCATCTACTACCGAGGAGCTCCGATTGGCAGCTCTTTCCCCGTATAACAACCCAAATGATGAGACCTCATCTATCCCAGATTCCATGGAACATTCTCCAGCGAAGACTTCAGATGATGGAAGTGAGATTTCGAGAAATAAGTGAGTCTAATCTTTTCATAGAAGCCCTCAAAAACCGTCAACTTTGAGCTCAATTATCTCGACTCCTTTGCAAGATATCAAAAATGTGTCAACTGATAGAATGTTTATAATTTTATGATAAAAAATTTATCAGTTGATAATTTTCCTATATCTTTCCGAGATATATGGGCTCAAAGTTGACGGTTTGGGTGGGCTTCTCGAGTGTTTACGGTATCTTGACCCCCCTTATTTTTCAGCTTCAACTCTCCGACCAGCTCGCCATCCCGTTCTCCGAACAAGAAAGTGTCATGGTCCCTATTCGACCAGGTTTCCCTGTCTGGAGAGGAATTTCTACTTCCTCGACGCTTTGAAGCGATTGAGTTGATTCCTGGAACCAGCACCCGAACCACATGTGCCTCCTGCTCTGCCACTGATCTTCTCGAGAGTGAACATGTCACAATTCGAAAGATTTCGCTTCAAGACCCAGCTACAGCCCGGAAGGAGTACCGGAATATCATTCTTTGCCGTCTTCTCCCCCACCCAAATATTCTTCCGATTTCTGAAGCTTACGAGGTGGATACCACGCTGTATACGGTATCGGAACAAATGGATGGAAGGCTTAGCGATATTGTCGAGGAGCGATTGACCCATTTCGTTGTGGCTAAGATTACCCATCAAGTGTTGGCTGCGGTGGCTATGATGCATCAAAATGGAATCGCGCATGGGGTTAGTGAAAAAGTTCTAGAAAGTTCTTGGAATTTTAAAGT</canonical>
            <polymorphic>CTCCGCCTACTTTCTTCCAAGGCTCTCAAGCCCATTCACTCCTTTATACTTGCAGAAATGCCGCGCCGCAACCCATTATGGCTTCGTCTACCCGGATCATCCTCCCCATCATCCTCATCTACTACCGAGGAGCTCCGATTGGCAGCTCTTTCCCCGTATAACAACCCAAATGATGAGACCTCATCTATCCCAGATTCCATGGAACATTCTCCAGCGAAGACTTCAGATGATGGAAGTGAGATTTCGAGAAATAAGTGAGTCTAATCTTTTCATAGAAGCCCTCAAAAACCGTCAACTTTGAGCTCAATTATCTCGACTCCTTTGCAAGATATCAAAAATGTGTCAACTGATAGAATGTTTATAATTTTATGATAAAAAATTTATCAGTTGATAATTTTCCTATATCTTTCCGAGATATATGGGCTCAAAGTTGACGGTTTGGGTGGGCTTCTCGAGTGTTTACGGTATCTTGACCCCCCTTATTTTTCAGCTTCAACTCWCCGACCAGCTCGCCATCCCGTTCTCCGAACAAGAAAGTGTCATGGTCCCTATTCGACCAGGTTTCCCTGTCTGGAGAGGAATTTCTACTTCCTCGACGCTTTGAAGCGATTGAGTTGATTCCTGGAACCAGCACCCGAACCACATGTGCCTCCTGCTCTGCCACTGATCTTCTCGAGAGTGAACATGTCACAATTCGAAAGATTTCGCTTCAAGACCCAGCTACAGCCCGGAAGGAGTACCGGAATATCATTCTTTGCCGTCTTCTCCCCCACCCAAATATTCTTCCGATTTCTGAAGCTTACGAGGTGGATACCACGCTGTATACGGTATCGGAACAAATGGATGGAAGGCTTAGCGATATTGTCGAGGAGCGATTGACCCATTTCGTTGTGGCTAAGATTACCCATCAAGTGTTGGCTGCGGTGGCTATGATGCATCAAAATGGAATCGCGCATGGGGTTAGTGAAAAAGTTCTAGAAAGTTCTTGGAATTTTAAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>261 186 167 136 91 89 39 24 7</canonical_bands>
                <polymorphic_bands>261 186 167 136 115 89 39 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGATTTCGAGAAATAAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>ATAGGGACCATGACACTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>316</pcr_amplicon_size>
		<canonical_amplicon>TGAGATTTCGAGAAATAAGTGAGTCTAATCTTTTCATAGAAGCCCTCAAAAACCGTCAACTTTGAGCTCAATTATCTCGACTCCTTTGCAAGATATCAAAAATGTGTCAACTGATAGAATGTTTATAATTTTATGATAAAAAATTTATCAGTTGATAATTTTCCTATATCTTTCCGAGATATATGGGCTCAAAGTTGACGGTTTGGGTGGGCTTCTCGAGTGTTTACGGTATCTTGACCCCCCTTATTTTTCAGCTTCAACTCTCCGACCAGCTCGCCATCCCGTTCTCCGAACAAGAAAGTGTCATGGTCCCTAT</canonical_amplicon>
		<polymorphic_amplicon>TGAGATTTCGAGAAATAAGTGAGTCTAATCTTTTCATAGAAGCCCTCAAAAACCGTCAACTTTGAGCTCAATTATCTCGACTCCTTTGCAAGATATCAAAAATGTGTCAACTGATAGAATGTTTATAATTTTATGATAAAAAATTTATCAGTTGATAATTTTCCTATATCTTTCCGAGATATATGGGCTCAAAGTTGACGGTTTGGGTGGGCTTCTCGAGTGTTTACGGTATCTTGACCCCCCTTATTTTTCAGCTTCAACTCWCCGACCAGCTCGCCATCCCGTTCTCCGAACAAGAAAGTGTCATGGTCCCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb424</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>85658</contig_pos>
        <strand></strand>
        <context>AAAACTCAAA[G/A]TATAGTTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAGTACTTTTTTCAATTTTTTTTCTGTTTCTCATTTTATAAAAACTCAAA</left_flank>
        <right_flank>TATAGTTTCTGAAAATTGTTCCTCCGCAGTATTTACAAATATTACGAATT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTTCAAAATGATGTCACTCCTCAATTTCCCTCTTTTAGTATAGTTTCCAAGAAATTCAAATTCTCGATTTTCAATTCATTTCAATTCTCTGATTCGTGATTCATCTCTCTCGCCACCTTCACATTTTCTCACTTTTATTTAAAAAATTCAGAATCCTTAATTTGCGTTTTCAATTCAAAATCAGTCAACTGGAAATTTAGGCTTTCTTTTTTGTTTCAAGGGCAAAAAATGCTTTATTTTTGAACTTTTGAGCTTTAAAAACCTGATTTTTGGATATCAAATATGGAGGCATATTAGATTAAAACTTTTTTTCAGAATATTTAAAATTTTTGAAACAGTACATTTTGAAAAGTTTTCAAAGCTTGAAGAATTTTGAAATGTTCTATAACTTTAAAAAAAAAGCTGAAATCGATTTTTCTATAAAATAGGGCTTTTGCTATTTGACAGTACTTTTTTCAATTTTTTTTCTGTTTCTCATTTTATAAAAACTCAAAGTATAGTTTCTGAAAATTGTTCCTCCGCAGTATTTACAAATATTACGAATTTAATATTCTAGAAAAAATTCTGAAGTCTTGCCTTCTAGAATATTCTTGTTCCCTATTATATAATTTTAGATGTCGAAGGATTTTATTATATAATGCATAAAAATGTCACTATTTCTAGAATCTAGAAATGGAAGCTCCTCAGTTCTTTGTGCAGATCAAACTAGAGATTTTCAGAATCTGACAATCTCAAAGTCTCAAAGTCTCAGCATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCGGATTCTCTAATTCTCTGAGTATCTGAATATCAGAATCTTAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTTAGAATCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATC</canonical>
            <polymorphic>ATTTTTTTCAAAATGATGTCACTCCTCAATTTCCCTCTTTTAGTATAGTTTCCAAGAAATTCAAATTCTCGATTTTCAATTCATTTCAATTCTCTGATTCGTGATTCATCTCTCTCGCCACCTTCACATTTTCTCACTTTTATTTAAAAAATTCAGAATCCTTAATTTGCGTTTTCAATTCAAAATCAGTCAACTGGAAATTTAGGCTTTCTTTTTTGTTTCAAGGGCAAAAAATGCTTTATTTTTGAACTTTTGAGCTTTAAAAACCTGATTTTTGGATATCAAATATGGAGGCATATTAGATTAAAACTTTTTTTCAGAATATTTAAAATTTTTGAAACAGTACATTTTGAAAAGTTTTCAAAGCTTGAAGAATTTTGAAATGTTCTATAACTTTAAAAAAAAAGCTGAAATCGATTTTTCTATAAAATAGGGCTTTTGCTATTTGACAGTACTTTTTTCAATTTTTTTTCTGTTTCTCATTTTATAAAAACTCAAARTATAGTTTCTGAAAATTGTTCCTCCGCAGTATTTACAAATATTACGAATTTAATATTCTAGAAAAAATTCTGAAGTCTTGCCTTCTAGAATATTCTTGTTCCCTATTATATAATTTTAGATGTCGAAGGATTTTATTATATAATGCATAAAAATGTCACTATTTCTAGAATCTAGAAATGGAAGCTCCTCAGTTCTTTGTGCAGATCAAACTAGAGATTTTCAGAATCTGACAATCTCAAAGTCTCAAAGTCTCAGCATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCGGATTCTCTAATTCTCTGAGTATCTGAATATCAGAATCTTAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTTAGAATCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGCTATTTGACAGTACTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTGAGGAGCTTCCATTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TTTTGCTATTTGACAGTACTTTTTTCAATTTTTTTTCTGTTTCTCATTTTATAAAAACTCAAAGTATAGTTTCTGAAAATTGTTCCTCCGCAGTATTTACAAATATTACGAATTTAATATTCTAGAAAAAATTCTGAAGTCTTGCCTTCTAGAATATTCTTGTTCCCTATTATATAATTTTAGATGTCGAAGGATTTTATTATATAATGCATAAAAATGTCACTATTTCTAGAATCTAGAAATGGAAGCTCCTCAGT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGCTATTTGACAGTACTTTTTTCAATTTTTTTTCTGTTTCTCATTTTATAAAAACTCAAARTATAGTTTCTGAAAATTGTTCCTCCGCAGTATTTACAAATATTACGAATTTAATATTCTAGAAAAAATTCTGAAGTCTTGCCTTCTAGAATATTCTTGTTCCCTATTATATAATTTTAGATGTCGAAGGATTTTATTATATAATGCATAAAAATGTCACTATTTCTAGAATCTAGAAATGGAAGCTCCTCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb426</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>44428</contig_pos>
        <strand>+</strand>
        <context>TCTCTGATCG[A/G]ACTGATTCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATATGTGTTTTTCTGTATCATTTACGAGCAGTAAACATCTCTGATCG</left_flank>
        <right_flank>ACTGATTCTGCTTTAGTTTTCCTTCATATTTCCGCATTCACCAGATACTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTATTAATTCATAGGATTATGCCTGTATAAAACATTAAAGCTGTGGAAGAGAAACTCCGGTGGTCGTGGCCGAGAGTCACACAACGATAACTACCGTAACCTAAAACAAACTTTCATTTTCTGGAAATATTTTCTAGATTTTCGTCCGTTTTCTGCCAGTTTTTCATAATTAAAAAATTTCATTTTCCGACTTGTTGGTGAAAAGGAAACTTAGAAAAACCCAGTGAAAACCAAGAAAATAAATCCTGAAAATAAACTTATTTTCAGGTTACGGTAGTTGTCGTTGTGGGTCCTTCGGTCACGGCCACCTTGCCCATAAGTCTGACTGTTTATACCAGAATAATATCACGACAGATTTAATTTACTGTTAATTTTCAGTGCCTACCACCTAAACGTAAACCGTCTGTTTTGCTTTGCTCTCAGTATGTGGCTCATCATTTTTATGAGCAAAATATGTGTTTTTCTGTATCATTTACGAGCAGTAAACATCTCTGATCGGACTGATTCTGCTTTAGTTTTCCTTCATATTTCCGCATTCACCAGATACTTTTATTTCTATTTCGGATCTGCTACTCCTTTGGCTTCAACTGTGGAGAGGGGTTTTGCAACACTTTTCTTATCGTGAGTTTGAAAAAAAATTTATAGCCTGAAGTAAAAAATCATACTTCAGAAGTTACGAACAGTCGCCACAGCTTCCAATCTTAGTACTGATCATTTCGATGAACCTTTTACTAGCATTGTTTTTCACAATTCTTACTGTATTCTTCGAGATTCCATTCAGTTTCGTCATTGTCGTTCCATTTGCCTACTTACTCATCTGCTTCACCTTGATTAGTGTTCTCTACAAATTCAATCTGACCCAATTCTACAAATTGAACAGATATCATAGAGAGCAGTACACATTGAGCAGCAGATTTCAACTCAAAGAAAATATCAGAGTGCTATCCCTTCTGATGAAAATGATCTATGCTGTCATAGGATTCATTGGGATCATTCTAG</canonical>
            <polymorphic>TTTATTAATTCATAGGATTATGCCTGTATAAAACATTAAAGCTGTGGAAGAGAAACTCCGGTGGTCGTGGCCGAGAGTCACACAACGATAACTACCGTAACCTAAAACAAACTTTCATTTTCTGGAAATATTTTCTAGATTTTCGTCCGTTTTCTGCCAGTTTTTCATAATTAAAAAATTTCATTTTCCGACTTGTTGGTGAAAAGGAAACTTAGAAAAACCCAGTGAAAACCAAGAAAATAAATCCTGAAAATAAACTTATTTTCAGGTTACGGTAGTTGTCGTTGTGGGTCCTTCGGTCACGGCCACCTTGCCCATAAGTCTGACTGTTTATACCAGAATAATATCACGACAGATTTAATTTACTGTTAATTTTCAGTGCCTACCACCTAAACGTAAACCGTCTGTTTTGCTTTGCTCTCAGTATGTGGCTCATCATTTTTATGAGCAAAATATGTGTTTTTCTGTATCATTTACGAGCAGTAAACATCTCTGATCGRACTGATTCTGCTTTAGTTTTCCTTCATATTTCCGCATTCACCAGATACTTTTATTTCTATTTCGGATCTGCTACTCCTTTGGCTTCAACTGTGGAGAGGGGTTTTGCAACACTTTTCTTATCGTGAGTTTGAAAAAAAATTTATAGCCTGAAGTAAAAAATCATACTTCAGAAGTTACGAACAGTCGCCACAGCTTCCAATCTTAGTACTGATCATTTCGATGAACCTTTTACTAGCATTGTTTTTCACAATTCTTACTGTATTCTTCGAGATTCCATTCAGTTTCGTCATTGTCGTTCCATTTGCCTACTTACTCATCTGCTTCACCTTGATTAGTGTTCTCTACAAATTCAATCTGACCCAATTCTACAAATTGAACAGATATCATAGAGAGCAGTACACATTGAGCAGCAGATTTCAACTCAAAGAAAATATCAGAGTGCTATCCCTTCTGATGAAAATGATCTATGCTGTCATAGGATTCATTGGGATCATTCTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>189 187 170 135 106 80 65 47 16 5</canonical_bands>
                <polymorphic_bands>189 187 170 135 106 80 70 47 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCTACCACCTAAACGTAAAC</pcr_primer_p1>
		<pcr_primer_p2>AACTCACGATAAGAAAAGTGTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCCTACCACCTAAACGTAAACCGTCTGTTTTGCTTTGCTCTCAGTATGTGGCTCATCATTTTTATGAGCAAAATATGTGTTTTTCTGTATCATTTACGAGCAGTAAACATCTCTGATCGGACTGATTCTGCTTTAGTTTTCCTTCATATTTCCGCATTCACCAGATACTTTTATTTCTATTTCGGATCTGCTACTCCTTTGGCTTCAACTGTGGAGAGGGGTTTTGCAACACTTTTCTTATCGTGAGTT</canonical_amplicon>
		<polymorphic_amplicon>GCCTACCACCTAAACGTAAACCGTCTGTTTTGCTTTGCTCTCAGTATGTGGCTCATCATTTTTATGAGCAAAATATGTGTTTTTCTGTATCATTTACGAGCAGTAAACATCTCTGATCGRACTGATTCTGCTTTAGTTTTCCTTCATATTTCCGCATTCACCAGATACTTTTATTTCTATTTCGGATCTGCTACTCCTTTGGCTTCAACTGTGGAGAGGGGTTTTGCAACACTTTTCTTATCGTGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb427</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>44457</contig_pos>
        <strand>+</strand>
        <context>TTCCTTCATA[C/T]TTCCGCATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCAGTAAACATCTCTGATCGGACTGATTCTGCTTTAGTTTTCCTTCATA</left_flank>
        <right_flank>TTCCGCATTCACCAGATACTTTTATTTCTATTTCGGATCTGCTACTCCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACATTAAAGCTGTGGAAGAGAAACTCCGGTGGTCGTGGCCGAGAGTCACACAACGATAACTACCGTAACCTAAAACAAACTTTCATTTTCTGGAAATATTTTCTAGATTTTCGTCCGTTTTCTGCCAGTTTTTCATAATTAAAAAATTTCATTTTCCGACTTGTTGGTGAAAAGGAAACTTAGAAAAACCCAGTGAAAACCAAGAAAATAAATCCTGAAAATAAACTTATTTTCAGGTTACGGTAGTTGTCGTTGTGGGTCCTTCGGTCACGGCCACCTTGCCCATAAGTCTGACTGTTTATACCAGAATAATATCACGACAGATTTAATTTACTGTTAATTTTCAGTGCCTACCACCTAAACGTAAACCGTCTGTTTTGCTTTGCTCTCAGTATGTGGCTCATCATTTTTATGAGCAAAATATGTGTTTTTCTGTATCATTTACGAGCAGTAAACATCTCTGATCGGACTGATTCTGCTTTAGTTTTCCTTCATATTTCCGCATTCACCAGATACTTTTATTTCTATTTCGGATCTGCTACTCCTTTGGCTTCAACTGTGGAGAGGGGTTTTGCAACACTTTTCTTATCGTGAGTTTGAAAAAAAATTTATAGCCTGAAGTAAAAAATCATACTTCAGAAGTTACGAACAGTCGCCACAGCTTCCAATCTTAGTACTGATCATTTCGATGAACCTTTTACTAGCATTGTTTTTCACAATTCTTACTGTATTCTTCGAGATTCCATTCAGTTTCGTCATTGTCGTTCCATTTGCCTACTTACTCATCTGCTTCACCTTGATTAGTGTTCTCTACAAATTCAATCTGACCCAATTCTACAAATTGAACAGATATCATAGAGAGCAGTACACATTGAGCAGCAGATTTCAACTCAAAGAAAATATCAGAGTGCTATCCCTTCTGATGAAAATGATCTATGCTGTCATAGGATTCATTGGGATCATTCTAGCGGGATTCACTCTACCAATCCTTCTGAAA</canonical>
            <polymorphic>AAAACATTAAAGCTGTGGAAGAGAAACTCCGGTGGTCGTGGCCGAGAGTCACACAACGATAACTACCGTAACCTAAAACAAACTTTCATTTTCTGGAAATATTTTCTAGATTTTCGTCCGTTTTCTGCCAGTTTTTCATAATTAAAAAATTTCATTTTCCGACTTGTTGGTGAAAAGGAAACTTAGAAAAACCCAGTGAAAACCAAGAAAATAAATCCTGAAAATAAACTTATTTTCAGGTTACGGTAGTTGTCGTTGTGGGTCCTTCGGTCACGGCCACCTTGCCCATAAGTCTGACTGTTTATACCAGAATAATATCACGACAGATTTAATTTACTGTTAATTTTCAGTGCCTACCACCTAAACGTAAACCGTCTGTTTTGCTTTGCTCTCAGTATGTGGCTCATCATTTTTATGAGCAAAATATGTGTTTTTCTGTATCATTTACGAGCAGTAAACATCTCTGATCGGACTGATTCTGCTTTAGTTTTCCTTCATAYTTCCGCATTCACCAGATACTTTTATTTCTATTTCGGATCTGCTACTCCTTTGGCTTCAACTGTGGAGAGGGGTTTTGCAACACTTTTCTTATCGTGAGTTTGAAAAAAAATTTATAGCCTGAAGTAAAAAATCATACTTCAGAAGTTACGAACAGTCGCCACAGCTTCCAATCTTAGTACTGATCATTTCGATGAACCTTTTACTAGCATTGTTTTTCACAATTCTTACTGTATTCTTCGAGATTCCATTCAGTTTCGTCATTGTCGTTCCATTTGCCTACTTACTCATCTGCTTCACCTTGATTAGTGTTCTCTACAAATTCAATCTGACCCAATTCTACAAATTGAACAGATATCATAGAGAGCAGTACACATTGAGCAGCAGATTTCAACTCAAAGAAAATATCAGAGTGCTATCCCTTCTGATGAAAATGATCTATGCTGTCATAGGATTCATTGGGATCATTCTAGCGGGATTCACTCTACCAATCCTTCTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTGTATCATTTACGAGCAGTA</pcr_primer_p1>
		<pcr_primer_p2>TCAGTACTAAGATTGGAAGCTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTGTATCATTTACGAGCAGTAAACATCTCTGATCGGACTGATTCTGCTTTAGTTTTCCTTCATATTTCCGCATTCACCAGATACTTTTATTTCTATTTCGGATCTGCTACTCCTTTGGCTTCAACTGTGGAGAGGGGTTTTGCAACACTTTTCTTATCGTGAGTTTGAAAAAAAATTTATAGCCTGAAGTAAAAAATCATACTTCAGAAGTTACGAACAGTCGCCACAGCTTCCAATCTTAGTACTGA</canonical_amplicon>
		<polymorphic_amplicon>TTCTGTATCATTTACGAGCAGTAAACATCTCTGATCGGACTGATTCTGCTTTAGTTTTCCTTCATAYTTCCGCATTCACCAGATACTTTTATTTCTATTTCGGATCTGCTACTCCTTTGGCTTCAACTGTGGAGAGGGGTTTTGCAACACTTTTCTTATCGTGAGTTTGAAAAAAAATTTATAGCCTGAAGTAAAAAATCATACTTCAGAAGTTACGAACAGTCGCCACAGCTTCCAATCTTAGTACTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb428</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>45308</contig_pos>
        <strand>+</strand>
        <context>AATAAATGTT[A/C]TTTTCAAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGATAGTCTTTCACCGCCTAACCAAATTAACTGAAAACCGAATAAATGTT</left_flank>
        <right_flank>TTTTCAAATACTTGTCTCAAGAAGCATACCGTAAGACCTACAATAGGAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATATCATAGAGAGCAGTACACATTGAGCAGCAGATTTCAACTCAAAGAAAATATCAGAGTGCTATCCCTTCTGATGAAAATGATCTATGCTGTCATAGGATTCATTGGGATCATTCTAGCGGGATTCACTCTACCAATCCTTCTGAAATTAAACTATTTGACAAGCGATGTTATGAGGACAATCGTTGATTTAGTGGTTCATTGGTAAGTGATTTTGTTACTTTAATAATTTAAAGTTTCGAAATTACAGTAATCCATTAATTGTGATTCCGATGACAACACTCTTCATTCCTGAATTCAAGAAACAAGCAAAGGCAGCAATGTTCAAAAGAATGCCGCTGGCAAGAAGTAGTGTGGATTCTCGCTATAGAAATTATCGAGAAGATCCCAATCAAGCTGATGTCTACTTTGATCTTTTCAAAAAGTCAATCAAGAAGAATAATTCTACGGATAGTCTTTCACCGCCTAACCAAATTAACTGAAAACCGAATAAATGTTCTTTTCAAATACTTGTCTCAAGAAGCATACCGTAAGACCTACAATAGGAGAGCTCCCTAACTTTTGACTTTGAATAAATTAATCTCGGTTCCTGTCAGAGATGTCAACTGATAAATTGTTTATCATAATGTTACCTAAACTTTATCAATTAACAGATTTTTGATATCTTTCACACAAACCGAGGTAAGTTAGCTCAAACTTGACCATGTGGGGCTCTTCCTTCACAAGTTTTACGGTCCTCCTATTACAGGTCTTTCCAGGAGCGCACGGACGCAGTCCCGATACGGAAAAATTTAGCTACTAGTTAGTCTGAATCCGAGACTATCACATAGGTCAGTCCTTCTGAAAGTCCAGTGGAAAAAGCAAAAAAGGAAAATAATAATTTTTCATCCGGGAAGAAACTGATGATAATTGATGAGATGAAAGAAAAAAGTAGTACAGAGATAATATAATTTTTGGTGACATTGAATATTGAATGCAAACAGAAAAATCTAATAAATA</canonical>
            <polymorphic>GATATCATAGAGAGCAGTACACATTGAGCAGCAGATTTCAACTCAAAGAAAATATCAGAGTGCTATCCCTTCTGATGAAAATGATCTATGCTGTCATAGGATTCATTGGGATCATTCTAGCGGGATTCACTCTACCAATCCTTCTGAAATTAAACTATTTGACAAGCGATGTTATGAGGACAATCGTTGATTTAGTGGTTCATTGGTAAGTGATTTTGTTACTTTAATAATTTAAAGTTTCGAAATTACAGTAATCCATTAATTGTGATTCCGATGACAACACTCTTCATTCCTGAATTCAAGAAACAAGCAAAGGCAGCAATGTTCAAAAGAATGCCGCTGGCAAGAAGTAGTGTGGATTCTCGCTATAGAAATTATCGAGAAGATCCCAATCAAGCTGATGTCTACTTTGATCTTTTCAAAAAGTCAATCAAGAAGAATAATTCTACGGATAGTCTTTCACCGCCTAACCAAATTAACTGAAAACCGAATAAATGTTMTTTTCAAATACTTGTCTCAAGAAGCATACCGTAAGACCTACAATAGGAGAGCTCCCTAACTTTTGACTTTGAATAAATTAATCTCGGTTCCTGTCAGAGATGTCAACTGATAAATTGTTTATCATAATGTTACCTAAACTTTATCAATTAACAGATTTTTGATATCTTTCACACAAACCGAGGTAAGTTAGCTCAAACTTGACCATGTGGGGCTCTTCCTTCACAAGTTTTACGGTCCTCCTATTACAGGTCTTTCCAGGAGCGCACGGACGCAGTCCCGATACGGAAAAATTTAGCTACTAGTTAGTCTGAATCCGAGACTATCACATAGGTCAGTCCTTCTGAAAGTCCAGTGGAAAAAGCAAAAAAGGAAAATAATAATTTTTCATCCGGGAAGAAACTGATGATAATTGATGAGATGAAAGAAAAAAGTAGTACAGAGATAATATAATTTTTGGTGACATTGAATATTGAATGCAAACAGAAAAATCTAATAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATAGTCTTTCACCGCCTAA</pcr_primer_p1>
		<pcr_primer_p2>CTGGAAAGACCTGTAATAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>GATAGTCTTTCACCGCCTAACCAAATTAACTGAAAACCGAATAAATGTTCTTTTCAAATACTTGTCTCAAGAAGCATACCGTAAGACCTACAATAGGAGAGCTCCCTAACTTTTGACTTTGAATAAATTAATCTCGGTTCCTGTCAGAGATGTCAACTGATAAATTGTTTATCATAATGTTACCTAAACTTTATCAATTAACAGATTTTTGATATCTTTCACACAAACCGAGGTAAGTTAGCTCAAACTTGACCATGTGGGGCTCTTCCTTCACAAGTTTTACGGTCCTCCTATTACAGGTCTTTCCAG</canonical_amplicon>
		<polymorphic_amplicon>GATAGTCTTTCACCGCCTAACCAAATTAACTGAAAACCGAATAAATGTTMTTTTCAAATACTTGTCTCAAGAAGCATACCGTAAGACCTACAATAGGAGAGCTCCCTAACTTTTGACTTTGAATAAATTAATCTCGGTTCCTGTCAGAGATGTCAACTGATAAATTGTTTATCATAATGTTACCTAAACTTTATCAATTAACAGATTTTTGATATCTTTCACACAAACCGAGGTAAGTTAGCTCAAACTTGACCATGTGGGGCTCTTCCTTCACAAGTTTTACGGTCCTCCTATTACAGGTCTTTCCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb429</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>45690</contig_pos>
        <strand>+</strand>
        <context>AAAATAATAA[C/T]TTTTCATCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCAGTCCTTCTGAAAGTCCAGTGGAAAAAGCAAAAAAGGAAAATAATAA</left_flank>
        <right_flank>TTTTCATCCGGGAAGAAACTGATGATAATTGATGAGATGAAAGAAAAAAG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGATCCCAATCAAGCTGATGTCTACTTTGATCTTTTCAAAAAGTCAATCAAGAAGAATAATTCTACGGATAGTCTTTCACCGCCTAACCAAATTAACTGAAAACCGAATAAATGTTCTTTTCAAATACTTGTCTCAAGAAGCATACCGTAAGACCTACAATAGGAGAGCTCCCTAACTTTTGACTTTGAATAAATTAATCTCGGTTCCTGTCAGAGATGTCAACTGATAAATTGTTTATCATAATGTTACCTAAACTTTATCAATTAACAGATTTTTGATATCTTTCACACAAACCGAGGTAAGTTAGCTCAAACTTGACCATGTGGGGCTCTTCCTTCACAAGTTTTACGGTCCTCCTATTACAGGTCTTTCCAGGAGCGCACGGACGCAGTCCCGATACGGAAAAATTTAGCTACTAGTTAGTCTGAATCCGAGACTATCACATAGGTCAGTCCTTCTGAAAGTCCAGTGGAAAAAGCAAAAAAGGAAAATAATAATTTTTCATCCGGGAAGAAACTGATGATAATTGATGAGATGAAAGAAAAAAGTAGTACAGAGATAATATAATTTTTGGTGACATTGAATATTGAATGCAAACAGAAAAATCTAATAAATAATCTACCGATTGATTGTGTTTTTGGAAGTGTTTGTAGTAGAAATTGGCTGAAAAACCGTTTAGTTCACATTTGCAGCCATTGTTGCTTTTTGAGATTCCATAATCGACCGAGGTGTTGAGCTGAGCAAGAATTCGACACGGAATCGTTCTCGAGCACCCAACTGACGATTTGGTTCACGTATCATTTGACGGAGCTGAAAATAGGGAATTCGAGAAGTCTCAAGAAGAGGAGGGAAACTTACCAAAGTATCCACACAGTCTGCTCTGGCGGTATCAATCCATATTCTCGCATCTTGTTCGTTTTTGAAATGCTCACCACCAGACCAAAGCGCCAATTCCATGACATTTTTTGCTTTAGTCAAACTGTTCGATTTGTCTTCTT</canonical>
            <polymorphic>AAGATCCCAATCAAGCTGATGTCTACTTTGATCTTTTCAAAAAGTCAATCAAGAAGAATAATTCTACGGATAGTCTTTCACCGCCTAACCAAATTAACTGAAAACCGAATAAATGTTCTTTTCAAATACTTGTCTCAAGAAGCATACCGTAAGACCTACAATAGGAGAGCTCCCTAACTTTTGACTTTGAATAAATTAATCTCGGTTCCTGTCAGAGATGTCAACTGATAAATTGTTTATCATAATGTTACCTAAACTTTATCAATTAACAGATTTTTGATATCTTTCACACAAACCGAGGTAAGTTAGCTCAAACTTGACCATGTGGGGCTCTTCCTTCACAAGTTTTACGGTCCTCCTATTACAGGTCTTTCCAGGAGCGCACGGACGCAGTCCCGATACGGAAAAATTTAGCTACTAGTTAGTCTGAATCCGAGACTATCACATAGGTCAGTCCTTCTGAAAGTCCAGTGGAAAAAGCAAAAAAGGAAAATAATAAYTTTTCATCCGGGAAGAAACTGATGATAATTGATGAGATGAAAGAAAAAAGTAGTACAGAGATAATATAATTTTTGGTGACATTGAATATTGAATGCAAACAGAAAAATCTAATAAATAATCTACCGATTGATTGTGTTTTTGGAAGTGTTTGTAGTAGAAATTGGCTGAAAAACCGTTTAGTTCACATTTGCAGCCATTGTTGCTTTTTGAGATTCCATAATCGACCGAGGTGTTGAGCTGAGCAAGAATTCGACACGGAATCGTTCTCGAGCACCCAACTGACGATTTGGTTCACGTATCATTTGACGGAGCTGAAAATAGGGAATTCGAGAAGTCTCAAGAAGAGGAGGGAAACTTACCAAAGTATCCACACAGTCTGCTCTGGCGGTATCAATCCATATTCTCGCATCTTGTTCGTTTTTGAAATGCTCACCACCAGACCAAAGCGCCAATTCCATGACATTTTTTGCTTTAGTCAAACTGTTCGATTTGTCTTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>144 127 102 92 90 88 77 59 49 41 37 33 32 29</canonical_bands>
                <polymorphic_bands>144 127 119 102 92 88 77 59 49 41 37 33 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTCTGAATCCGAGACTATCAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCAGCCAATTTCTACTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTCTGAATCCGAGACTATCACATAGGTCAGTCCTTCTGAAAGTCCAGTGGAAAAAGCAAAAAAGGAAAATAATAATTTTTCATCCGGGAAGAAACTGATGATAATTGATGAGATGAAAGAAAAAAGTAGTACAGAGATAATATAATTTTTGGTGACATTGAATATTGAATGCAAACAGAAAAATCTAATAAATAATCTACCGATTGATTGTGTTTTTGGAAGTGTTTGTAGTAGAAATTGGCTGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AGTCTGAATCCGAGACTATCACATAGGTCAGTCCTTCTGAAAGTCCAGTGGAAAAAGCAAAAAAGGAAAATAATAAYTTTTCATCCGGGAAGAAACTGATGATAATTGATGAGATGAAAGAAAAAAGTAGTACAGAGATAATATAATTTTTGGTGACATTGAATATTGAATGCAAACAGAAAAATCTAATAAATAATCTACCGATTGATTGTGTTTTTGGAAGTGTTTGTAGTAGAAATTGGCTGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb430</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>45608</contig_pos>
        <strand>+</strand>
        <context>AATTTAGCTA[A/C]TAGTTAGTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTCTTTCCAGGAGCGCACGGACGCAGTCCCGATACGGAAAAATTTAGCTA</left_flank>
        <right_flank>TAGTTAGTCTGAATCCGAGACTATCACATAGGTCAGTCCTTCTGAAAGTC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAAACAAGCAAAGGCAGCAATGTTCAAAAGAATGCCGCTGGCAAGAAGTAGTGTGGATTCTCGCTATAGAAATTATCGAGAAGATCCCAATCAAGCTGATGTCTACTTTGATCTTTTCAAAAAGTCAATCAAGAAGAATAATTCTACGGATAGTCTTTCACCGCCTAACCAAATTAACTGAAAACCGAATAAATGTTCTTTTCAAATACTTGTCTCAAGAAGCATACCGTAAGACCTACAATAGGAGAGCTCCCTAACTTTTGACTTTGAATAAATTAATCTCGGTTCCTGTCAGAGATGTCAACTGATAAATTGTTTATCATAATGTTACCTAAACTTTATCAATTAACAGATTTTTGATATCTTTCACACAAACCGAGGTAAGTTAGCTCAAACTTGACCATGTGGGGCTCTTCCTTCACAAGTTTTACGGTCCTCCTATTACAGGTCTTTCCAGGAGCGCACGGACGCAGTCCCGATACGGAAAAATTTAGCTACTAGTTAGTCTGAATCCGAGACTATCACATAGGTCAGTCCTTCTGAAAGTCCAGTGGAAAAAGCAAAAAAGGAAAATAATAATTTTTCATCCGGGAAGAAACTGATGATAATTGATGAGATGAAAGAAAAAAGTAGTACAGAGATAATATAATTTTTGGTGACATTGAATATTGAATGCAAACAGAAAAATCTAATAAATAATCTACCGATTGATTGTGTTTTTGGAAGTGTTTGTAGTAGAAATTGGCTGAAAAACCGTTTAGTTCACATTTGCAGCCATTGTTGCTTTTTGAGATTCCATAATCGACCGAGGTGTTGAGCTGAGCAAGAATTCGACACGGAATCGTTCTCGAGCACCCAACTGACGATTTGGTTCACGTATCATTTGACGGAGCTGAAAATAGGGAATTCGAGAAGTCTCAAGAAGAGGAGGGAAACTTACCAAAGTATCCACACAGTCTGCTCTGGCGGTATCAATCCATATTCTCGCATCTTGTTCG</canonical>
            <polymorphic>AAGAAACAAGCAAAGGCAGCAATGTTCAAAAGAATGCCGCTGGCAAGAAGTAGTGTGGATTCTCGCTATAGAAATTATCGAGAAGATCCCAATCAAGCTGATGTCTACTTTGATCTTTTCAAAAAGTCAATCAAGAAGAATAATTCTACGGATAGTCTTTCACCGCCTAACCAAATTAACTGAAAACCGAATAAATGTTCTTTTCAAATACTTGTCTCAAGAAGCATACCGTAAGACCTACAATAGGAGAGCTCCCTAACTTTTGACTTTGAATAAATTAATCTCGGTTCCTGTCAGAGATGTCAACTGATAAATTGTTTATCATAATGTTACCTAAACTTTATCAATTAACAGATTTTTGATATCTTTCACACAAACCGAGGTAAGTTAGCTCAAACTTGACCATGTGGGGCTCTTCCTTCACAAGTTTTACGGTCCTCCTATTACAGGTCTTTCCAGGAGCGCACGGACGCAGTCCCGATACGGAAAAATTTAGCTAMTAGTTAGTCTGAATCCGAGACTATCACATAGGTCAGTCCTTCTGAAAGTCCAGTGGAAAAAGCAAAAAAGGAAAATAATAATTTTTCATCCGGGAAGAAACTGATGATAATTGATGAGATGAAAGAAAAAAGTAGTACAGAGATAATATAATTTTTGGTGACATTGAATATTGAATGCAAACAGAAAAATCTAATAAATAATCTACCGATTGATTGTGTTTTTGGAAGTGTTTGTAGTAGAAATTGGCTGAAAAACCGTTTAGTTCACATTTGCAGCCATTGTTGCTTTTTGAGATTCCATAATCGACCGAGGTGTTGAGCTGAGCAAGAATTCGACACGGAATCGTTCTCGAGCACCCAACTGACGATTTGGTTCACGTATCATTTGACGGAGCTGAAAATAGGGAATTCGAGAAGTCTCAAGAAGAGGAGGGAAACTTACCAAAGTATCCACACAGTCTGCTCTGGCGGTATCAATCCATATTCTCGCATCTTGTTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACTAGT</site>
                <isoschizomers>
                    <enzyme>AhlI</enzyme>
                    <enzyme>BcuI</enzyme>
                    <enzyme>SpeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTACAGGTCTTTCCAGGAG</pcr_primer_p1>
		<pcr_primer_p2>ATTAGATTTTTCTGTTTGCATTC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CTATTACAGGTCTTTCCAGGAGCGCACGGACGCAGTCCCGATACGGAAAAATTTAGCTACTAGTTAGTCTGAATCCGAGACTATCACATAGGTCAGTCCTTCTGAAAGTCCAGTGGAAAAAGCAAAAAAGGAAAATAATAATTTTTCATCCGGGAAGAAACTGATGATAATTGATGAGATGAAAGAAAAAAGTAGTACAGAGATAATATAATTTTTGGTGACATTGAATATTGAATGCAAACAGAAAAATCTAAT</canonical_amplicon>
		<polymorphic_amplicon>CTATTACAGGTCTTTCCAGGAGCGCACGGACGCAGTCCCGATACGGAAAAATTTAGCTAMTAGTTAGTCTGAATCCGAGACTATCACATAGGTCAGTCCTTCTGAAAGTCCAGTGGAAAAAGCAAAAAAGGAAAATAATAATTTTTCATCCGGGAAGAAACTGATGATAATTGATGAGATGAAAGAAAAAAGTAGTACAGAGATAATATAATTTTTGGTGACATTGAATATTGAATGCAAACAGAAAAATCTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb431</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>54142</contig_pos>
        <strand>+</strand>
        <context>AAAAAAGGGC[C/T]TGATGGTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>NNNNTCCACTTCTGTTGAAAATTTGGATTGAGGTGTCTGAAAAAAAGGGC</left_flank>
        <right_flank>TGATGGTTGTATAAAGAACAAAACGAAACTTAATTGTAGTTAATTGTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCCGGGCTCCGACCGGGACACNNAAAACCTTCTGAGAACCAGGTCTAACACGATTGACATTGACATTTGAAGTTATTGAGGCACAAGCCGAGCAGTCAAGAGCCCTGATGGTCTGCTTCTCCATCCGTATACACACTATATCATATCTGTCTGTACAGTACCTATATCCTGTCTGTGGTGTGTTCTACATCTGTGTTGGTTTTGAATACACGAGTAGTTGGGGTGAGCCGCGCGTTTTTTGTTGAGGTCCTGAGAAAATATTGTGAGTGGAAAAGAGAATCAGAGAAATCCAGAGGGGAGGAAAATGAGCATTTTCCAAGTAAATGATAACCAGAGAAACCGCGCAATTTCTCACTTACCCATATTGATTTCTAGACCGTTTTTTTCAACTTTGTGATAGTTTTTTGATAGACCATTAGGATCTGATAGGGCCACACCTGATNNNNNNNNNNTCCACTTCTGTTGAAAATTTGGATTGAGGTGTCTGAAAAAAAGGGCTTGATGGTTGTATAAAGAACAAAACGAAACTTAATTGTAGTTAATTGTTTTTTTTCTGCTAAAGTTAATCGACATTGGATACAGTGAAAACTGTATTAGAAGAGTCCCTTTAATAGAAGGGCCACTCTAATAGAAGGGCCCTCCGGGAGTGGGTCGGAGAAATGGAAGGTCTTTCTAATACAGTTCTTACAGTATGTCACATCGAAATGGCACCACAAGTTTATAAAATACATACTTTGTCAGGTTTGAATTTTTTCTTTGTCAGGTTGTGAATTTTTTCTTTGTCAGGTTTGAATTTTTTCTGGTTTCAAACTGAATATCTTCGTTAAAGGAATTTTACGAAACCTTTGGTGACTGTATACCGTACATTGAATTTTTTTTAGTTTGATAAAAAAAGTTTCAAACTTTTCTTCATAGAAAACAATAAAGCTAAAAACTTTCAACTTTTTTGAGCTTTCCTGTATGTGTTCTTCATTCAGTTCTTGCTTCGCACGATTTCCA</canonical>
            <polymorphic>GGCCGGGCTCCGACCGGGACACNNAAAACCTTCTGAGAACCAGGTCTAACACGATTGACATTGACATTTGAAGTTATTGAGGCACAAGCCGAGCAGTCAAGAGCCCTGATGGTCTGCTTCTCCATCCGTATACACACTATATCATATCTGTCTGTACAGTACCTATATCCTGTCTGTGGTGTGTTCTACATCTGTGTTGGTTTTGAATACACGAGTAGTTGGGGTGAGCCGCGCGTTTTTTGTTGAGGTCCTGAGAAAATATTGTGAGTGGAAAAGAGAATCAGAGAAATCCAGAGGGGAGGAAAATGAGCATTTTCCAAGTAAATGATAACCAGAGAAACCGCGCAATTTCTCACTTACCCATATTGATTTCTAGACCGTTTTTTTCAACTTTGTGATAGTTTTTTGATAGACCATTAGGATCTGATAGGGCCACACCTGATNNNNNNNNNNTCCACTTCTGTTGAAAATTTGGATTGAGGTGTCTGAAAAAAAGGGCYTGATGGTTGTATAAAGAACAAAACGAAACTTAATTGTAGTTAATTGTTTTTTTTCTGCTAAAGTTAATCGACATTGGATACAGTGAAAACTGTATTAGAAGAGTCCCTTTAATAGAAGGGCCACTCTAATAGAAGGGCCCTCCGGGAGTGGGTCGGAGAAATGGAAGGTCTTTCTAATACAGTTCTTACAGTATGTCACATCGAAATGGCACCACAAGTTTATAAAATACATACTTTGTCAGGTTTGAATTTTTTCTTTGTCAGGTTGTGAATTTTTTCTTTGTCAGGTTTGAATTTTTTCTGGTTTCAAACTGAATATCTTCGTTAAAGGAATTTTACGAAACCTTTGGTGACTGTATACCGTACATTGAATTTTTTTTAGTTTGATAAAAAAAGTTTCAAACTTTTCTTCATAGAAAACAATAAAGCTAAAAACTTTCAACTTTTTTGAGCTTTCCTGTATGTGTTCTTCATTCAGTTCTTGCTTCGCACGATTTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>291 204 125 122 81 66 48 24 17 15 5 2</canonical_bands>
                <polymorphic_bands>291 204 188 125 81 48 24 17 15 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTCTCACTTACCCATATTGA</pcr_primer_p1>
		<pcr_primer_p2>CAGTTTTCACTGTATCCAATGTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATTTCTCACTTACCCATATTGATTTCTAGACCGTTTTTTTCAACTTTGTGATAGTTTTTTGATAGACCATTAGGATCTGATAGGGCCACACCTGATNNNNNNNNNNTCCACTTCTGTTGAAAATTTGGATTGAGGTGTCTGAAAAAAAGGGCTTGATGGTTGTATAAAGAACAAAACGAAACTTAATTGTAGTTAATTGTTTTTTTTCTGCTAAAGTTAATCGACATTGGATACAGTGAAAACTG</canonical_amplicon>
		<polymorphic_amplicon>AATTTCTCACTTACCCATATTGATTTCTAGACCGTTTTTTTCAACTTTGTGATAGTTTTTTGATAGACCATTAGGATCTGATAGGGCCACACCTGATNNNNNNNNNNTCCACTTCTGTTGAAAATTTGGATTGAGGTGTCTGAAAAAAAGGGCYTGATGGTTGTATAAAGAACAAAACGAAACTTAATTGTAGTTAATTGTTTTTTTTCTGCTAAAGTTAATCGACATTGGATACAGTGAAAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb432</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>54359</contig_pos>
        <strand>+</strand>
        <context>TGGCACCACA[A/C]GTTTATAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGTCTTTCTAATACAGTTCTTACAGTATGTCACATCGAAATGGCACCACA</left_flank>
        <right_flank>GTTTATAAAATACATACTTTGTCAGGTTTGAATTTTTTCTTTGTCAGGTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGGGGTGAGCCGCGCGTTTTTTGTTGAGGTCCTGAGAAAATATTGTGAGTGGAAAAGAGAATCAGAGAAATCCAGAGGGGAGGAAAATGAGCATTTTCCAAGTAAATGATAACCAGAGAAACCGCGCAATTTCTCACTTACCCATATTGATTTCTAGACCGTTTTTTTCAACTTTGTGATAGTTTTTTGATAGACCATTAGGATCTGATAGGGCCACACCTGATNNNNNNNNNNTCCACTTCTGTTGAAAATTTGGATTGAGGTGTCTGAAAAAAAGGGCTTGATGGTTGTATAAAGAACAAAACGAAACTTAATTGTAGTTAATTGTTTTTTTTCTGCTAAAGTTAATCGACATTGGATACAGTGAAAACTGTATTAGAAGAGTCCCTTTAATAGAAGGGCCACTCTAATAGAAGGGCCCTCCGGGAGTGGGTCGGAGAAATGGAAGGTCTTTCTAATACAGTTCTTACAGTATGTCACATCGAAATGGCACCACAAGTTTATAAAATACATACTTTGTCAGGTTTGAATTTTTTCTTTGTCAGGTTGTGAATTTTTTCTTTGTCAGGTTTGAATTTTTTCTGGTTTCAAACTGAATATCTTCGTTAAAGGAATTTTACGAAACCTTTGGTGACTGTATACCGTACATTGAATTTTTTTTAGTTTGATAAAAAAAGTTTCAAACTTTTCTTCATAGAAAACAATAAAGCTAAAAACTTTCAACTTTTTTGAGCTTTCCTGTATGTGTTCTTCATTCAGTTCTTGCTTCGCACGATTTCCACTTATAGGAGAAGTTGTAAAAGTAATAAAAAAATACAAAAGTAAAATAGAGTTTTACTAGTCACTCCAGATTCTGAAACTCTATAGAAAGATCCGAAAACAAGAGACACTGAAAGAAAAAGAAAAAGGATAATAGAATACACTCGTCGTGAGCTTTGCGAGAAACGATAGCGGAAATGATAAAATGATAATGTGTGGAGAATCTGGGCAAGAGCACT</canonical>
            <polymorphic>GTTGGGGTGAGCCGCGCGTTTTTTGTTGAGGTCCTGAGAAAATATTGTGAGTGGAAAAGAGAATCAGAGAAATCCAGAGGGGAGGAAAATGAGCATTTTCCAAGTAAATGATAACCAGAGAAACCGCGCAATTTCTCACTTACCCATATTGATTTCTAGACCGTTTTTTTCAACTTTGTGATAGTTTTTTGATAGACCATTAGGATCTGATAGGGCCACACCTGATNNNNNNNNNNTCCACTTCTGTTGAAAATTTGGATTGAGGTGTCTGAAAAAAAGGGCTTGATGGTTGTATAAAGAACAAAACGAAACTTAATTGTAGTTAATTGTTTTTTTTCTGCTAAAGTTAATCGACATTGGATACAGTGAAAACTGTATTAGAAGAGTCCCTTTAATAGAAGGGCCACTCTAATAGAAGGGCCCTCCGGGAGTGGGTCGGAGAAATGGAAGGTCTTTCTAATACAGTTCTTACAGTATGTCACATCGAAATGGCACCACAMGTTTATAAAATACATACTTTGTCAGGTTTGAATTTTTTCTTTGTCAGGTTGTGAATTTTTTCTTTGTCAGGTTTGAATTTTTTCTGGTTTCAAACTGAATATCTTCGTTAAAGGAATTTTACGAAACCTTTGGTGACTGTATACCGTACATTGAATTTTTTTTAGTTTGATAAAAAAAGTTTCAAACTTTTCTTCATAGAAAACAATAAAGCTAAAAACTTTCAACTTTTTTGAGCTTTCCTGTATGTGTTCTTCATTCAGTTCTTGCTTCGCACGATTTCCACTTATAGGAGAAGTTGTAAAAGTAATAAAAAAATACAAAAGTAAAATAGAGTTTTACTAGTCACTCCAGATTCTGAAACTCTATAGAAAGATCCGAAAACAAGAGACACTGAAAGAAAAAGAAAAAGGATAATAGAATACACTCGTCGTGAGCTTTGCGAGAAACGATAGCGGAAATGATAAAATGATAATGTGTGGAGAATCTGGGCAAGAGCACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTGCTAAAGTTAATCGACAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTCAAACCTGACAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTCTGCTAAAGTTAATCGACATTGGATACAGTGAAAACTGTATTAGAAGAGTCCCTTTAATAGAAGGGCCACTCTAATAGAAGGGCCCTCCGGGAGTGGGTCGGAGAAATGGAAGGTCTTTCTAATACAGTTCTTACAGTATGTCACATCGAAATGGCACCACAAGTTTATAAAATACATACTTTGTCAGGTTTGAATTTTTTCTTTGTCAGGTTGTGAATTTTTTCTTTGTCAGGTTTGAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTGCTAAAGTTAATCGACATTGGATACAGTGAAAACTGTATTAGAAGAGTCCCTTTAATAGAAGGGCCACTCTAATAGAAGGGCCCTCCGGGAGTGGGTCGGAGAAATGGAAGGTCTTTCTAATACAGTTCTTACAGTATGTCACATCGAAATGGCACCACAMGTTTATAAAATACATACTTTGTCAGGTTTGAATTTTTTCTTTGTCAGGTTGTGAATTTTTTCTTTGTCAGGTTTGAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb433</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>54389</contig_pos>
        <strand>+</strand>
        <context>TGTCAGGTTT[G/T]AATTTTTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CACATCGAAATGGCACCACAAGTTTATAAAATACATACTTTGTCAGGTTT</left_flank>
        <right_flank>AATTTTTTCTTTGTCAGGTTGTGAATTTTTTCTTTGTCAGGTTTGAATTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCCTGAGAAAATATTGTGAGTGGAAAAGAGAATCAGAGAAATCCAGAGGGGAGGAAAATGAGCATTTTCCAAGTAAATGATAACCAGAGAAACCGCGCAATTTCTCACTTACCCATATTGATTTCTAGACCGTTTTTTTCAACTTTGTGATAGTTTTTTGATAGACCATTAGGATCTGATAGGGCCACACCTGATNNNNNNNNNNTCCACTTCTGTTGAAAATTTGGATTGAGGTGTCTGAAAAAAAGGGCTTGATGGTTGTATAAAGAACAAAACGAAACTTAATTGTAGTTAATTGTTTTTTTTCTGCTAAAGTTAATCGACATTGGATACAGTGAAAACTGTATTAGAAGAGTCCCTTTAATAGAAGGGCCACTCTAATAGAAGGGCCCTCCGGGAGTGGGTCGGAGAAATGGAAGGTCTTTCTAATACAGTTCTTACAGTATGTCACATCGAAATGGCACCACAAGTTTATAAAATACATACTTTGTCAGGTTTGAATTTTTTCTTTGTCAGGTTGTGAATTTTTTCTTTGTCAGGTTTGAATTTTTTCTGGTTTCAAACTGAATATCTTCGTTAAAGGAATTTTACGAAACCTTTGGTGACTGTATACCGTACATTGAATTTTTTTTAGTTTGATAAAAAAAGTTTCAAACTTTTCTTCATAGAAAACAATAAAGCTAAAAACTTTCAACTTTTTTGAGCTTTCCTGTATGTGTTCTTCATTCAGTTCTTGCTTCGCACGATTTCCACTTATAGGAGAAGTTGTAAAAGTAATAAAAAAATACAAAAGTAAAATAGAGTTTTACTAGTCACTCCAGATTCTGAAACTCTATAGAAAGATCCGAAAACAAGAGACACTGAAAGAAAAAGAAAAAGGATAATAGAATACACTCGTCGTGAGCTTTGCGAGAAACGATAGCGGAAATGATAAAATGATAATGTGTGGAGAATCTGGGCAAGAGCACTAGACTGCTGTGCTCGGCGCAATCCAAAATC</canonical>
            <polymorphic>GTCCTGAGAAAATATTGTGAGTGGAAAAGAGAATCAGAGAAATCCAGAGGGGAGGAAAATGAGCATTTTCCAAGTAAATGATAACCAGAGAAACCGCGCAATTTCTCACTTACCCATATTGATTTCTAGACCGTTTTTTTCAACTTTGTGATAGTTTTTTGATAGACCATTAGGATCTGATAGGGCCACACCTGATNNNNNNNNNNTCCACTTCTGTTGAAAATTTGGATTGAGGTGTCTGAAAAAAAGGGCTTGATGGTTGTATAAAGAACAAAACGAAACTTAATTGTAGTTAATTGTTTTTTTTCTGCTAAAGTTAATCGACATTGGATACAGTGAAAACTGTATTAGAAGAGTCCCTTTAATAGAAGGGCCACTCTAATAGAAGGGCCCTCCGGGAGTGGGTCGGAGAAATGGAAGGTCTTTCTAATACAGTTCTTACAGTATGTCACATCGAAATGGCACCACAAGTTTATAAAATACATACTTTGTCAGGTTTKAATTTTTTCTTTGTCAGGTTGTGAATTTTTTCTTTGTCAGGTTTGAATTTTTTCTGGTTTCAAACTGAATATCTTCGTTAAAGGAATTTTACGAAACCTTTGGTGACTGTATACCGTACATTGAATTTTTTTTAGTTTGATAAAAAAAGTTTCAAACTTTTCTTCATAGAAAACAATAAAGCTAAAAACTTTCAACTTTTTTGAGCTTTCCTGTATGTGTTCTTCATTCAGTTCTTGCTTCGCACGATTTCCACTTATAGGAGAAGTTGTAAAAGTAATAAAAAAATACAAAAGTAAAATAGAGTTTTACTAGTCACTCCAGATTCTGAAACTCTATAGAAAGATCCGAAAACAAGAGACACTGAAAGAAAAAGAAAAAGGATAATAGAATACACTCGTCGTGAGCTTTGCGAGAAACGATAGCGGAAATGATAAAATGATAATGTGTGGAGAATCTGGGCAAGAGCACTAGACTGCTGTGCTCGGCGCAATCCAAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>377 279 221 39 39 23 22</canonical_bands>
                <polymorphic_bands>377 302 221 39 39 22</polymorphic_bands>
            </assay>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>504 429 23 22 22</canonical_bands>
                <polymorphic_bands>527 429 22 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCGACATTGGATACAGTGAA</pcr_primer_p1>
		<pcr_primer_p2>ATTCAGTTTGAAACCAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATCGACATTGGATACAGTGAAAACTGTATTAGAAGAGTCCCTTTAATAGAAGGGCCACTCTAATAGAAGGGCCCTCCGGGAGTGGGTCGGAGAAATGGAAGGTCTTTCTAATACAGTTCTTACAGTATGTCACATCGAAATGGCACCACAAGTTTATAAAATACATACTTTGTCAGGTTTGAATTTTTTCTTTGTCAGGTTGTGAATTTTTTCTTTGTCAGGTTTGAATTTTTTCTGGTTTCAAACTGAAT</canonical_amplicon>
		<polymorphic_amplicon>ATCGACATTGGATACAGTGAAAACTGTATTAGAAGAGTCCCTTTAATAGAAGGGCCACTCTAATAGAAGGGCCCTCCGGGAGTGGGTCGGAGAAATGGAAGGTCTTTCTAATACAGTTCTTACAGTATGTCACATCGAAATGGCACCACAAGTTTATAAAATACATACTTTGTCAGGTTTKAATTTTTTCTTTGTCAGGTTGTGAATTTTTTCTTTGTCAGGTTTGAATTTTTTCTGGTTTCAAACTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb434</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>54968</contig_pos>
        <strand>+</strand>
        <context>ATCTCTTATA[C/T]TTTCTGACGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACAAATCAAACTTCCCTGTGCTCCCCTGCGTCTCCTCACATCTCTTATA</left_flank>
        <right_flank>TTTCTGACGGTTTCGGCTGTTCCATTTTATTAATAGGAAGAGCGAGAGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGGAATTTTACGAAACCTTTGGTGACTGTATACCGTACATTGAATTTTTTTTAGTTTGATAAAAAAAGTTTCAAACTTTTCTTCATAGAAAACAATAAAGCTAAAAACTTTCAACTTTTTTGAGCTTTCCTGTATGTGTTCTTCATTCAGTTCTTGCTTCGCACGATTTCCACTTATAGGAGAAGTTGTAAAAGTAATAAAAAAATACAAAAGTAAAATAGAGTTTTACTAGTCACTCCAGATTCTGAAACTCTATAGAAAGATCCGAAAACAAGAGACACTGAAAGAAAAAGAAAAAGGATAATAGAATACACTCGTCGTGAGCTTTGCGAGAAACGATAGCGGAAATGATAAAATGATAATGTGTGGAGAATCTGGGCAAGAGCACTAGACTGCTGTGCTCGGCGCAATCCAAAATCATTATTGGCTCGGATCACGTCAAATCAAGACAAATCAAACTTCCCTGTGCTCCCCTGCGTCTCCTCACATCTCTTATATTTTCTGACGGTTTCGGCTGTTCCATTTTATTAATAGGAAGAGCGAGAGAGTGTGAGAAAATTCTCGATGAAACAAATATTGGATATCAACATGATTTAGGATATTATCAAAAGATTATTGAAGCTGGGCATACCTTCTACTAAAATTATTGATACTGTTATTGTTGTTAGTTCCACTTGAAGACGTTGCGATTGGAGGAATATTCGAGAATATTCGTTCTGGTTGGACATATATGGCAGCTGGCTCATGTGCGGATATGTCGCATCTGAAATCATGTAGTATTTTATATGTTTGGATTCTGGCAGATTGTTTTTTAAAGCCAATTGCTTTTTAGTTTTTGGAATAGAAATTTTTGGGTTTTACGGAAAGTTTACCTTTCTTTTATGCCACCCAAACCGTAAATTTTGAGCTACTATATCTCGGTTCTTTTGACAGATATAAAAAGTTGTCAACTGATAACATGTTTATCATAATATCAAAAATACTTTTTTAGTTGATTA</canonical>
            <polymorphic>AAAGGAATTTTACGAAACCTTTGGTGACTGTATACCGTACATTGAATTTTTTTTAGTTTGATAAAAAAAGTTTCAAACTTTTCTTCATAGAAAACAATAAAGCTAAAAACTTTCAACTTTTTTGAGCTTTCCTGTATGTGTTCTTCATTCAGTTCTTGCTTCGCACGATTTCCACTTATAGGAGAAGTTGTAAAAGTAATAAAAAAATACAAAAGTAAAATAGAGTTTTACTAGTCACTCCAGATTCTGAAACTCTATAGAAAGATCCGAAAACAAGAGACACTGAAAGAAAAAGAAAAAGGATAATAGAATACACTCGTCGTGAGCTTTGCGAGAAACGATAGCGGAAATGATAAAATGATAATGTGTGGAGAATCTGGGCAAGAGCACTAGACTGCTGTGCTCGGCGCAATCCAAAATCATTATTGGCTCGGATCACGTCAAATCAAGACAAATCAAACTTCCCTGTGCTCCCCTGCGTCTCCTCACATCTCTTATAYTTTCTGACGGTTTCGGCTGTTCCATTTTATTAATAGGAAGAGCGAGAGAGTGTGAGAAAATTCTCGATGAAACAAATATTGGATATCAACATGATTTAGGATATTATCAAAAGATTATTGAAGCTGGGCATACCTTCTACTAAAATTATTGATACTGTTATTGTTGTTAGTTCCACTTGAAGACGTTGCGATTGGAGGAATATTCGAGAATATTCGTTCTGGTTGGACATATATGGCAGCTGGCTCATGTGCGGATATGTCGCATCTGAAATCATGTAGTATTTTATATGTTTGGATTCTGGCAGATTGTTTTTTAAAGCCAATTGCTTTTTAGTTTTTGGAATAGAAATTTTTGGGTTTTACGGAAAGTTTACCTTTCTTTTATGCCACCCAAACCGTAAATTTTGAGCTACTATATCTCGGTTCTTTTGACAGATATAAAAAGTTGTCAACTGATAACATGTTTATCATAATATCAAAAATACTTTTTTAGTTGATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAAATCAAGACAAATCAAACT</pcr_primer_p1>
		<pcr_primer_p2>CTTCAAGTGGAACTAACAACAAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GTCAAATCAAGACAAATCAAACTTCCCTGTGCTCCCCTGCGTCTCCTCACATCTCTTATATTTTCTGACGGTTTCGGCTGTTCCATTTTATTAATAGGAAGAGCGAGAGAGTGTGAGAAAATTCTCGATGAAACAAATATTGGATATCAACATGATTTAGGATATTATCAAAAGATTATTGAAGCTGGGCATACCTTCTACTAAAATTATTGATACTGTTATTGTTGTTAGTTCCACTTGAAG</canonical_amplicon>
		<polymorphic_amplicon>GTCAAATCAAGACAAATCAAACTTCCCTGTGCTCCCCTGCGTCTCCTCACATCTCTTATAYTTTCTGACGGTTTCGGCTGTTCCATTTTATTAATAGGAAGAGCGAGAGAGTGTGAGAAAATTCTCGATGAAACAAATATTGGATATCAACATGATTTAGGATATTATCAAAAGATTATTGAAGCTGGGCATACCTTCTACTAAAATTATTGATACTGTTATTGTTGTTAGTTCCACTTGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb435</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>54826</contig_pos>
        <strand>+</strand>
        <context>AAATGATAAA[A/G]TGATAATGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAATACACTCGTCGTGAGCTTTGCGAGAAACGATAGCGGAAATGATAAA</left_flank>
        <right_flank>TGATAATGTGTGGAGAATCTGGGCAAGAGCACTAGACTGCTGTGCTCGGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTACAGTATGTCACATCGAAATGGCACCACAAGTTTATAAAATACATACTTTGTCAGGTTTGAATTTTTTCTTTGTCAGGTTGTGAATTTTTTCTTTGTCAGGTTTGAATTTTTTCTGGTTTCAAACTGAATATCTTCGTTAAAGGAATTTTACGAAACCTTTGGTGACTGTATACCGTACATTGAATTTTTTTTAGTTTGATAAAAAAAGTTTCAAACTTTTCTTCATAGAAAACAATAAAGCTAAAAACTTTCAACTTTTTTGAGCTTTCCTGTATGTGTTCTTCATTCAGTTCTTGCTTCGCACGATTTCCACTTATAGGAGAAGTTGTAAAAGTAATAAAAAAATACAAAAGTAAAATAGAGTTTTACTAGTCACTCCAGATTCTGAAACTCTATAGAAAGATCCGAAAACAAGAGACACTGAAAGAAAAAGAAAAAGGATAATAGAATACACTCGTCGTGAGCTTTGCGAGAAACGATAGCGGAAATGATAAAATGATAATGTGTGGAGAATCTGGGCAAGAGCACTAGACTGCTGTGCTCGGCGCAATCCAAAATCATTATTGGCTCGGATCACGTCAAATCAAGACAAATCAAACTTCCCTGTGCTCCCCTGCGTCTCCTCACATCTCTTATATTTTCTGACGGTTTCGGCTGTTCCATTTTATTAATAGGAAGAGCGAGAGAGTGTGAGAAAATTCTCGATGAAACAAATATTGGATATCAACATGATTTAGGATATTATCAAAAGATTATTGAAGCTGGGCATACCTTCTACTAAAATTATTGATACTGTTATTGTTGTTAGTTCCACTTGAAGACGTTGCGATTGGAGGAATATTCGAGAATATTCGTTCTGGTTGGACATATATGGCAGCTGGCTCATGTGCGGATATGTCGCATCTGAAATCATGTAGTATTTTATATGTTTGGATTCTGGCAGATTGTTTTTTAAAGCCAATTGCTTTTTAGTTTTTGGAATAGAAATTTTTGGGT</canonical>
            <polymorphic>CTTACAGTATGTCACATCGAAATGGCACCACAAGTTTATAAAATACATACTTTGTCAGGTTTGAATTTTTTCTTTGTCAGGTTGTGAATTTTTTCTTTGTCAGGTTTGAATTTTTTCTGGTTTCAAACTGAATATCTTCGTTAAAGGAATTTTACGAAACCTTTGGTGACTGTATACCGTACATTGAATTTTTTTTAGTTTGATAAAAAAAGTTTCAAACTTTTCTTCATAGAAAACAATAAAGCTAAAAACTTTCAACTTTTTTGAGCTTTCCTGTATGTGTTCTTCATTCAGTTCTTGCTTCGCACGATTTCCACTTATAGGAGAAGTTGTAAAAGTAATAAAAAAATACAAAAGTAAAATAGAGTTTTACTAGTCACTCCAGATTCTGAAACTCTATAGAAAGATCCGAAAACAAGAGACACTGAAAGAAAAAGAAAAAGGATAATAGAATACACTCGTCGTGAGCTTTGCGAGAAACGATAGCGGAAATGATAAARTGATAATGTGTGGAGAATCTGGGCAAGAGCACTAGACTGCTGTGCTCGGCGCAATCCAAAATCATTATTGGCTCGGATCACGTCAAATCAAGACAAATCAAACTTCCCTGTGCTCCCCTGCGTCTCCTCACATCTCTTATATTTTCTGACGGTTTCGGCTGTTCCATTTTATTAATAGGAAGAGCGAGAGAGTGTGAGAAAATTCTCGATGAAACAAATATTGGATATCAACATGATTTAGGATATTATCAAAAGATTATTGAAGCTGGGCATACCTTCTACTAAAATTATTGATACTGTTATTGTTGTTAGTTCCACTTGAAGACGTTGCGATTGGAGGAATATTCGAGAATATTCGTTCTGGTTGGACATATATGGCAGCTGGCTCATGTGCGGATATGTCGCATCTGAAATCATGTAGTATTTTATATGTTTGGATTCTGGCAGATTGTTTTTTAAAGCCAATTGCTTTTTAGTTTTTGGAATAGAAATTTTTGGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATAATAGAATACACTCGTCGT</pcr_primer_p1>
		<pcr_primer_p2>CACTCTCTCGCTCTTCCTATTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGATAATAGAATACACTCGTCGTGAGCTTTGCGAGAAACGATAGCGGAAATGATAAAATGATAATGTGTGGAGAATCTGGGCAAGAGCACTAGACTGCTGTGCTCGGCGCAATCCAAAATCATTATTGGCTCGGATCACGTCAAATCAAGACAAATCAAACTTCCCTGTGCTCCCCTGCGTCTCCTCACATCTCTTATATTTTCTGACGGTTTCGGCTGTTCCATTTTATTAATAGGAAGAGCGAGAGAGTG</canonical_amplicon>
		<polymorphic_amplicon>GGATAATAGAATACACTCGTCGTGAGCTTTGCGAGAAACGATAGCGGAAATGATAAARTGATAATGTGTGGAGAATCTGGGCAAGAGCACTAGACTGCTGTGCTCGGCGCAATCCAAAATCATTATTGGCTCGGATCACGTCAAATCAAGACAAATCAAACTTCCCTGTGCTCCCCTGCGTCTCCTCACATCTCTTATATTTTCTGACGGTTTCGGCTGTTCCATTTTATTAATAGGAAGAGCGAGAGAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb437</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>67445</contig_pos>
        <strand>+</strand>
        <context>AATTGCTGAC[A/G]AAGCAGCCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAGAAGCATACTTATGATCGTATTGATTGAAGAAAAACGAATTGCTGAC</left_flank>
        <right_flank>AAGCAGCCAATAAAAAGCTGAGATTGATAATCGAAAACAAAAACTACTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATATCTAGCAATCCATTTATCAACGGCTTCTTGAATCTTCTTTCCTGACTTCACAGCAGCAACAAGCTCGCGCTCTTCAACATCTGATGGCTCGTCGGTGGTGACTCTGCGAACCATCGGAGCTCGACCACCGCGAGCACTTCCTAGCGCTGCTCCACGAGGTCGCCCTCGCTTTGGTGGAGTGTTGAAGCTGCTAAGATTTCCAAAGCTTGTAGAAAGATCTGATACATCATTAGCGGGGCGCTTCTTCCGTCCTCGAGTACTAGCAGTTGGTGAGCGGAACACTGGTTCTTTTTCACTGAAAAATATTAATATACGCAGCTATAAAAATTTATATACTACCTAGAGGTATTTCCAGATGCCATATCCGTGTAGTTGACTCGAGCTTGATTTCGAGTCGACATGCGCTGTGGCGACTGTTCAGGAGGTGTTTCCGACATCCTGAAAATAGAAGCATACTTATGATCGTATTGATTGAAGAAAAACGAATTGCTGACGAAGCAGCCAATAAAAAGCTGAGATTGATAATCGAAAACAAAAACTACTAAATTCTATGTTCTTTCGATTTATTTAGATGGAATGAAAAAACTATCACCTCCTGTTGCAAACTCAGTAGAAAAAATACTGCGACTTGGAATGTTTCAGCAAACACGGAGGTGAAATGTTTTATAATTCCGACAATAAATTAGGTAAAAATTCAAAACAGAAACGGAAAAAATCGTGAGATTTTAAAATGCGGGAACCCATAAAAATCGAAAATTCAAACAGAAAATCTTCAGCTTGTCGTAGTGGTGATTGCACAGCACCGCGCACCGTACTTTTGTAATAAAACACGATTTTCCGTTTTAAAAATAAGTACCGAAAAAAAATAAATATATTGATTTTGAAGATCATACCGGTACGGTCTCTGATTTTCGGAAATATTAATTTTATTGATTTTTGTGCATTGAATTTTATTTTACTCGTTATCTTCTAAATCTGATATATAGTGCATTCTA</canonical>
            <polymorphic>TTATATCTAGCAATCCATTTATCAACGGCTTCTTGAATCTTCTTTCCTGACTTCACAGCAGCAACAAGCTCGCGCTCTTCAACATCTGATGGCTCGTCGGTGGTGACTCTGCGAACCATCGGAGCTCGACCACCGCGAGCACTTCCTAGCGCTGCTCCACGAGGTCGCCCTCGCTTTGGTGGAGTGTTGAAGCTGCTAAGATTTCCAAAGCTTGTAGAAAGATCTGATACATCATTAGCGGGGCGCTTCTTCCGTCCTCGAGTACTAGCAGTTGGTGAGCGGAACACTGGTTCTTTTTCACTGAAAAATATTAATATACGCAGCTATAAAAATTTATATACTACCTAGAGGTATTTCCAGATGCCATATCCGTGTAGTTGACTCGAGCTTGATTTCGAGTCGACATGCGCTGTGGCGACTGTTCAGGAGGTGTTTCCGACATCCTGAAAATAGAAGCATACTTATGATCGTATTGATTGAAGAAAAACGAATTGCTGACRAAGCAGCCAATAAAAAGCTGAGATTGATAATCGAAAACAAAAACTACTAAATTCTATGTTCTTTCGATTTATTTAGATGGAATGAAAAAACTATCACCTCCTGTTGCAAACTCAGTAGAAAAAATACTGCGACTTGGAATGTTTCAGCAAACACGGAGGTGAAATGTTTTATAATTCCGACAATAAATTAGGTAAAAATTCAAAACAGAAACGGAAAAAATCGTGAGATTTTAAAATGCGGGAACCCATAAAAATCGAAAATTCAAACAGAAAATCTTCAGCTTGTCGTAGTGGTGATTGCACAGCACCGCGCACCGTACTTTTGTAATAAAACACGATTTTCCGTTTTAAAAATAAGTACCGAAAAAAAATAAATATATTGATTTTGAAGATCATACCGGTACGGTCTCTGATTTTCGGAAATATTAATTTTATTGATTTTTGTGCATTGAATTTTATTTTACTCGTTATCTTCTAAATCTGATATATAGTGCATTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTACCTAGAGGTATTTCCAGATG</pcr_primer_p1>
		<pcr_primer_p2>TCTAAATAAATCGAAAGAACATAGAA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>ACTACCTAGAGGTATTTCCAGATGCCATATCCGTGTAGTTGACTCGAGCTTGATTTCGAGTCGACATGCGCTGTGGCGACTGTTCAGGAGGTGTTTCCGACATCCTGAAAATAGAAGCATACTTATGATCGTATTGATTGAAGAAAAACGAATTGCTGACGAAGCAGCCAATAAAAAGCTGAGATTGATAATCGAAAACAAAAACTACTAAATTCTATGTTCTTTCGATTTATTTAGA</canonical_amplicon>
		<polymorphic_amplicon>ACTACCTAGAGGTATTTCCAGATGCCATATCCGTGTAGTTGACTCGAGCTTGATTTCGAGTCGACATGCGCTGTGGCGACTGTTCAGGAGGTGTTTCCGACATCCTGAAAATAGAAGCATACTTATGATCGTATTGATTGAAGAAAAACGAATTGCTGACRAAGCAGCCAATAAAAAGCTGAGATTGATAATCGAAAACAAAAACTACTAAATTCTATGTTCTTTCGATTTATTTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb438</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>66900</contig_pos>
        <strand>+</strand>
        <context>CACAAATCGC[A/G]AAGAAAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTGTAGCAGACATTTGTGGAGTGATTGTTCCTTTACATCCACAAATCGC</left_flank>
        <right_flank>AAGAAAAATTGATGCATTTCTGCAGTAGCCACTAGGAATTTCTCATTATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAGTTCTTTGTGCGATTAGAGCCTCGTACTTCTCGTTTCCAGCAGAGTTATTCTTCAGTTTAGCCTTTTCCGCTTCAATTTGTCTTGATGTTTTGTCTTTGGATTGCGTTAATTCAATCGTCACATCGACAAGAGCGGACGAGATTTTCATTGCGCAGAATGTTGCCGTGTGACGGAACGCTCTGACTTGACTGTCAGCCATTCCGGTGAGAAGTTGAACAAATCCGTCCATAAGACTGCTATCGAAAAGCATAAAAGATTTCGTTTGACCGATTAGACAATGAAGGAAAGTGTGTAAATTGGCTCGAACTTTTTTCAAGCTTCCTCCATGAACAATTGGATAATCTGCAGAGTCTTCTTCGAAATCTTCTGTCATCTGACAAATGATATCTCTGAAAATAAGATAAATTAGGTATTTGAGGTAAATGTAAACAAACTTGTATGAGAGTGTAGCAGACATTTGTGGAGTGATTGTTCCTTTACATCCACAAATCGCAAAGAAAAATTGATGCATTTCTGCAGTAGCCACTAGGAATTTCTCATTATATCTAGCAATCCATTTATCAACGGCTTCTTGAATCTTCTTTCCTGACTTCACAGCAGCAACAAGCTCGCGCTCTTCAACATCTGATGGCTCGTCGGTGGTGACTCTGCGAACCATCGGAGCTCGACCACCGCGAGCACTTCCTAGCGCTGCTCCACGAGGTCGCCCTCGCTTTGGTGGAGTGTTGAAGCTGCTAAGATTTCCAAAGCTTGTAGAAAGATCTGATACATCATTAGCGGGGCGCTTCTTCCGTCCTCGAGTACTAGCAGTTGGTGAGCGGAACACTGGTTCTTTTTCACTGAAAAATATTAATATACGCAGCTATAAAAATTTATATACTACCTAGAGGTATTTCCAGATGCCATATCCGTGTAGTTGACTCGAGCTTGATTTCGAGTCGACATGCGCTGTGGCGACTGTTCAGGAGGTGTTTCCGACATCCTGAAAATAGAA</canonical>
            <polymorphic>TTTGAGTTCTTTGTGCGATTAGAGCCTCGTACTTCTCGTTTCCAGCAGAGTTATTCTTCAGTTTAGCCTTTTCCGCTTCAATTTGTCTTGATGTTTTGTCTTTGGATTGCGTTAATTCAATCGTCACATCGACAAGAGCGGACGAGATTTTCATTGCGCAGAATGTTGCCGTGTGACGGAACGCTCTGACTTGACTGTCAGCCATTCCGGTGAGAAGTTGAACAAATCCGTCCATAAGACTGCTATCGAAAAGCATAAAAGATTTCGTTTGACCGATTAGACAATGAAGGAAAGTGTGTAAATTGGCTCGAACTTTTTTCAAGCTTCCTCCATGAACAATTGGATAATCTGCAGAGTCTTCTTCGAAATCTTCTGTCATCTGACAAATGATATCTCTGAAAATAAGATAAATTAGGTATTTGAGGTAAATGTAAACAAACTTGTATGAGAGTGTAGCAGACATTTGTGGAGTGATTGTTCCTTTACATCCACAAATCGCRAAGAAAAATTGATGCATTTCTGCAGTAGCCACTAGGAATTTCTCATTATATCTAGCAATCCATTTATCAACGGCTTCTTGAATCTTCTTTCCTGACTTCACAGCAGCAACAAGCTCGCGCTCTTCAACATCTGATGGCTCGTCGGTGGTGACTCTGCGAACCATCGGAGCTCGACCACCGCGAGCACTTCCTAGCGCTGCTCCACGAGGTCGCCCTCGCTTTGGTGGAGTGTTGAAGCTGCTAAGATTTCCAAAGCTTGTAGAAAGATCTGATACATCATTAGCGGGGCGCTTCTTCCGTCCTCGAGTACTAGCAGTTGGTGAGCGGAACACTGGTTCTTTTTCACTGAAAAATATTAATATACGCAGCTATAAAAATTTATATACTACCTAGAGGTATTTCCAGATGCCATATCCGTGTAGTTGACTCGAGCTTGATTTCGAGTCGACATGCGCTGTGGCGACTGTTCAGGAGGTGTTTCCGACATCCTGAAAATAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCAGAGTCTTCTTCGAAAT</pcr_primer_p1>
		<pcr_primer_p2>GAAGTCAGGAAAGAAGATTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGCAGAGTCTTCTTCGAAATCTTCTGTCATCTGACAAATGATATCTCTGAAAATAAGATAAATTAGGTATTTGAGGTAAATGTAAACAAACTTGTATGAGAGTGTAGCAGACATTTGTGGAGTGATTGTTCCTTTACATCCACAAATCGCAAAGAAAAATTGATGCATTTCTGCAGTAGCCACTAGGAATTTCTCATTATATCTAGCAATCCATTTATCAACGGCTTCTTGAATCTTCTTTCCTGACTTC</canonical_amplicon>
		<polymorphic_amplicon>TGCAGAGTCTTCTTCGAAATCTTCTGTCATCTGACAAATGATATCTCTGAAAATAAGATAAATTAGGTATTTGAGGTAAATGTAAACAAACTTGTATGAGAGTGTAGCAGACATTTGTGGAGTGATTGTTCCTTTACATCCACAAATCGCRAAGAAAAATTGATGCATTTCTGCAGTAGCCACTAGGAATTTCTCATTATATCTAGCAATCCATTTATCAACGGCTTCTTGAATCTTCTTTCCTGACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb439</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>132801</contig_pos>
        <strand>+</strand>
        <context>TCGAGATGGA[C/T]TAATTGGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAAAAAAAAAACGGAATTTTCTTATTTCGTTTTTTGCTTCGAGATGGA</left_flank>
        <right_flank>TAATTGGAAAGGGGATCCCTTTTTCTGGGAAATTTTCGATTACAGGGGAT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTATTCGACTTTTGAAGCCAACTCTTTTTTTTTCGGTGGACCCACTTCTCCAGTCACATCTCTTGGAGAGAAGTTGTGGTTTGAACTCACAAACTGAGAAAGCCAAACAAGATGCTATCAACATCATTTCTTCTCAACACAGAATATTTTCTAAAACTAGGTTAAATTTTGGACTGGAAAGAAACTTTGAAAGAGATGAAAGAAAAATGACAAATCTTAATATTTAAAGTCGCAATTCAAAACTGTGGAAGTGGACCACTCTGATGGCCGCCATCTACACATAAAAGTTCCTGAAGGCAATTGGTCCCATGAGAGTCGAAGAAAAAATAGGGAAGAGGGAAGCAAGCAGCTGAAGGGCTATTTATTATCTGTACGTGCATAAACTGCAATGTACTTGTGGTGGGGTTTTATGAATAGATATCATAGAACCGTAGGAAGAAGTCGAATTTCAAAAAAAAAACGGAATTTTCTTATTTCGTTTTTTGCTTCGAGATGGACTAATTGGAAAGGGGATCCCTTTTTCTGGGAAATTTTCGATTACAGGGGATGAGCTCCGTGTGATGGAGGTGGCTTTTCTTTGTGTATTGTTGTAGGAAAATGGAGTAGCCCTTTTTTTTTTTTTGAGTTCACAAGGGAAACTCAACACCGTTTAAAGCCAGATTATGATGAACATTACAGGATAGACTGAAACTAGTTTATCTGGAAAATTTCTAAAAATTTTAGAATCCTCTCGCCAGTTCCAGCCAAGGTATATCAGCTTCAGTCCTAAAAATTGCATTTTTGCGCTGAAATCGCGATTTTTGGTACCTAAACTATATATAACTCGGCTGGAACTGGTGAGCGGATTTTAAAATTTTCAGAGTTTTCTAGATAGACTATCCTCAATCTATACTGGAGGTTCCCTTGTTAGCTTGACATCTTATATGGTCTCCAAAACAATACATGACGAGAGAATTCGAAATGTAATGAGCAGAATACATTGTGGGCATAGCATAATT</canonical>
            <polymorphic>ATTTATTCGACTTTTGAAGCCAACTCTTTTTTTTTCGGTGGACCCACTTCTCCAGTCACATCTCTTGGAGAGAAGTTGTGGTTTGAACTCACAAACTGAGAAAGCCAAACAAGATGCTATCAACATCATTTCTTCTCAACACAGAATATTTTCTAAAACTAGGTTAAATTTTGGACTGGAAAGAAACTTTGAAAGAGATGAAAGAAAAATGACAAATCTTAATATTTAAAGTCGCAATTCAAAACTGTGGAAGTGGACCACTCTGATGGCCGCCATCTACACATAAAAGTTCCTGAAGGCAATTGGTCCCATGAGAGTCGAAGAAAAAATAGGGAAGAGGGAAGCAAGCAGCTGAAGGGCTATTTATTATCTGTACGTGCATAAACTGCAATGTACTTGTGGTGGGGTTTTATGAATAGATATCATAGAACCGTAGGAAGAAGTCGAATTTCAAAAAAAAAACGGAATTTTCTTATTTCGTTTTTTGCTTCGAGATGGAYTAATTGGAAAGGGGATCCCTTTTTCTGGGAAATTTTCGATTACAGGGGATGAGCTCCGTGTGATGGAGGTGGCTTTTCTTTGTGTATTGTTGTAGGAAAATGGAGTAGCCCTTTTTTTTTTTTTGAGTTCACAAGGGAAACTCAACACCGTTTAAAGCCAGATTATGATGAACATTACAGGATAGACTGAAACTAGTTTATCTGGAAAATTTCTAAAAATTTTAGAATCCTCTCGCCAGTTCCAGCCAAGGTATATCAGCTTCAGTCCTAAAAATTGCATTTTTGCGCTGAAATCGCGATTTTTGGTACCTAAACTATATATAACTCGGCTGGAACTGGTGAGCGGATTTTAAAATTTTCAGAGTTTTCTAGATAGACTATCCTCAATCTATACTGGAGGTTCCCTTGTTAGCTTGACATCTTATATGGTCTCCAAAACAATACATGACGAGAGAATTCGAAATGTAATGAGCAGAATACATTGTGGGCATAGCATAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTGAAGGGCTATTTATTATCT</pcr_primer_p1>
		<pcr_primer_p2>TTTCCTACAACAATACACAAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCTGAAGGGCTATTTATTATCTGTACGTGCATAAACTGCAATGTACTTGTGGTGGGGTTTTATGAATAGATATCATAGAACCGTAGGAAGAAGTCGAATTTCAAAAAAAAAACGGAATTTTCTTATTTCGTTTTTTGCTTCGAGATGGACTAATTGGAAAGGGGATCCCTTTTTCTGGGAAATTTTCGATTACAGGGGATGAGCTCCGTGTGATGGAGGTGGCTTTTCTTTGTGTATTGTTGTAGGAAA</canonical_amplicon>
		<polymorphic_amplicon>AGCTGAAGGGCTATTTATTATCTGTACGTGCATAAACTGCAATGTACTTGTGGTGGGGTTTTATGAATAGATATCATAGAACCGTAGGAAGAAGTCGAATTTCAAAAAAAAAACGGAATTTTCTTATTTCGTTTTTTGCTTCGAGATGGAYTAATTGGAAAGGGGATCCCTTTTTCTGGGAAATTTTCGATTACAGGGGATGAGCTCCGTGTGATGGAGGTGGCTTTTCTTTGTGTATTGTTGTAGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb440</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>132812</contig_pos>
        <strand>+</strand>
        <context>TAATTGGAAA[A/G]GGGATCCCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACGGAATTTTCTTATTTCGTTTTTTGCTTCGAGATGGACTAATTGGAAA</left_flank>
        <right_flank>GGGATCCCTTTTTCTGGGAAATTTTCGATTACAGGGGATGAGCTCCGTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGAAGCCAACTCTTTTTTTTTCGGTGGACCCACTTCTCCAGTCACATCTCTTGGAGAGAAGTTGTGGTTTGAACTCACAAACTGAGAAAGCCAAACAAGATGCTATCAACATCATTTCTTCTCAACACAGAATATTTTCTAAAACTAGGTTAAATTTTGGACTGGAAAGAAACTTTGAAAGAGATGAAAGAAAAATGACAAATCTTAATATTTAAAGTCGCAATTCAAAACTGTGGAAGTGGACCACTCTGATGGCCGCCATCTACACATAAAAGTTCCTGAAGGCAATTGGTCCCATGAGAGTCGAAGAAAAAATAGGGAAGAGGGAAGCAAGCAGCTGAAGGGCTATTTATTATCTGTACGTGCATAAACTGCAATGTACTTGTGGTGGGGTTTTATGAATAGATATCATAGAACCGTAGGAAGAAGTCGAATTTCAAAAAAAAAACGGAATTTTCTTATTTCGTTTTTTGCTTCGAGATGGACTAATTGGAAAGGGGATCCCTTTTTCTGGGAAATTTTCGATTACAGGGGATGAGCTCCGTGTGATGGAGGTGGCTTTTCTTTGTGTATTGTTGTAGGAAAATGGAGTAGCCCTTTTTTTTTTTTTGAGTTCACAAGGGAAACTCAACACCGTTTAAAGCCAGATTATGATGAACATTACAGGATAGACTGAAACTAGTTTATCTGGAAAATTTCTAAAAATTTTAGAATCCTCTCGCCAGTTCCAGCCAAGGTATATCAGCTTCAGTCCTAAAAATTGCATTTTTGCGCTGAAATCGCGATTTTTGGTACCTAAACTATATATAACTCGGCTGGAACTGGTGAGCGGATTTTAAAATTTTCAGAGTTTTCTAGATAGACTATCCTCAATCTATACTGGAGGTTCCCTTGTTAGCTTGACATCTTATATGGTCTCCAAAACAATACATGACGAGAGAATTCGAAATGTAATGAGCAGAATACATTGTGGGCATAGCATAATTTTATAACTAAT</canonical>
            <polymorphic>TTTTGAAGCCAACTCTTTTTTTTTCGGTGGACCCACTTCTCCAGTCACATCTCTTGGAGAGAAGTTGTGGTTTGAACTCACAAACTGAGAAAGCCAAACAAGATGCTATCAACATCATTTCTTCTCAACACAGAATATTTTCTAAAACTAGGTTAAATTTTGGACTGGAAAGAAACTTTGAAAGAGATGAAAGAAAAATGACAAATCTTAATATTTAAAGTCGCAATTCAAAACTGTGGAAGTGGACCACTCTGATGGCCGCCATCTACACATAAAAGTTCCTGAAGGCAATTGGTCCCATGAGAGTCGAAGAAAAAATAGGGAAGAGGGAAGCAAGCAGCTGAAGGGCTATTTATTATCTGTACGTGCATAAACTGCAATGTACTTGTGGTGGGGTTTTATGAATAGATATCATAGAACCGTAGGAAGAAGTCGAATTTCAAAAAAAAAACGGAATTTTCTTATTTCGTTTTTTGCTTCGAGATGGACTAATTGGAAARGGGATCCCTTTTTCTGGGAAATTTTCGATTACAGGGGATGAGCTCCGTGTGATGGAGGTGGCTTTTCTTTGTGTATTGTTGTAGGAAAATGGAGTAGCCCTTTTTTTTTTTTTGAGTTCACAAGGGAAACTCAACACCGTTTAAAGCCAGATTATGATGAACATTACAGGATAGACTGAAACTAGTTTATCTGGAAAATTTCTAAAAATTTTAGAATCCTCTCGCCAGTTCCAGCCAAGGTATATCAGCTTCAGTCCTAAAAATTGCATTTTTGCGCTGAAATCGCGATTTTTGGTACCTAAACTATATATAACTCGGCTGGAACTGGTGAGCGGATTTTAAAATTTTCAGAGTTTTCTAGATAGACTATCCTCAATCTATACTGGAGGTTCCCTTGTTAGCTTGACATCTTATATGGTCTCCAAAACAATACATGACGAGAGAATTCGAAATGTAATGAGCAGAATACATTGTGGGCATAGCATAATTTTATAACTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTGAAGGGCTATTTATTATCT</pcr_primer_p1>
		<pcr_primer_p2>TTTCCTACAACAATACACAAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCTGAAGGGCTATTTATTATCTGTACGTGCATAAACTGCAATGTACTTGTGGTGGGGTTTTATGAATAGATATCATAGAACCGTAGGAAGAAGTCGAATTTCAAAAAAAAAACGGAATTTTCTTATTTCGTTTTTTGCTTCGAGATGGACTAATTGGAAAGGGGATCCCTTTTTCTGGGAAATTTTCGATTACAGGGGATGAGCTCCGTGTGATGGAGGTGGCTTTTCTTTGTGTATTGTTGTAGGAAA</canonical_amplicon>
		<polymorphic_amplicon>AGCTGAAGGGCTATTTATTATCTGTACGTGCATAAACTGCAATGTACTTGTGGTGGGGTTTTATGAATAGATATCATAGAACCGTAGGAAGAAGTCGAATTTCAAAAAAAAAACGGAATTTTCTTATTTCGTTTTTTGCTTCGAGATGGACTAATTGGAAARGGGATCCCTTTTTCTGGGAAATTTTCGATTACAGGGGATGAGCTCCGTGTGATGGAGGTGGCTTTTCTTTGTGTATTGTTGTAGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb441</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>132915</contig_pos>
        <strand>+</strand>
        <context>AGTAGCCCTT[C/T]RTTTTTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGAGGTGGCTTTTCTTTGTGTATTGTTGTAGGAAAATGGAGTAGCCCTT</left_flank>
        <right_flank>TTTTTTTTTTGAGTTCACAAGGGAAACTCAACACCGTTTAAAGCCAGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTATCAACATCATTTCTTCTCAACACAGAATATTTTCTAAAACTAGGTTAAATTTTGGACTGGAAAGAAACTTTGAAAGAGATGAAAGAAAAATGACAAATCTTAATATTTAAAGTCGCAATTCAAAACTGTGGAAGTGGACCACTCTGATGGCCGCCATCTACACATAAAAGTTCCTGAAGGCAATTGGTCCCATGAGAGTCGAAGAAAAAATAGGGAAGAGGGAAGCAAGCAGCTGAAGGGCTATTTATTATCTGTACGTGCATAAACTGCAATGTACTTGTGGTGGGGTTTTATGAATAGATATCATAGAACCGTAGGAAGAAGTCGAATTTCAAAAAAAAAACGGAATTTTCTTATTTCGTTTTTTGCTTCGAGATGGACTAATTGGAAAGGGGATCCCTTTTTCTGGGAAATTTTCGATTACAGGGGATGAGCTCCGTGTGATGGAGGTGGCTTTTCTTTGTGTATTGTTGTAGGAAAATGGAGTAGCCCTTTTTTTTTTTTTGAGTTCACAAGGGAAACTCAACACCGTTTAAAGCCAGATTATGATGAACATTACAGGATAGACTGAAACTAGTTTATCTGGAAAATTTCTAAAAATTTTAGAATCCTCTCGCCAGTTCCAGCCAAGGTATATCAGCTTCAGTCCTAAAAATTGCATTTTTGCGCTGAAATCGCGATTTTTGGTACCTAAACTATATATAACTCGGCTGGAACTGGTGAGCGGATTTTAAAATTTTCAGAGTTTTCTAGATAGACTATCCTCAATCTATACTGGAGGTTCCCTTGTTAGCTTGACATCTTATATGGTCTCCAAAACAATACATGACGAGAGAATTCGAAATGTAATGAGCAGAATACATTGTGGGCATAGCATAATTTTATAACTAATTGAAAGAATATGATGAGTAGCTAGCGAAATTTGAGAATGTTCCAGAATTCGAAATGATGAACTTTGCTGAAAGAGGTGTTAAAAATTTGAATGCAGCTAAAAG</canonical>
            <polymorphic>TGCTATCAACATCATTTCTTCTCAACACAGAATATTTTCTAAAACTAGGTTAAATTTTGGACTGGAAAGAAACTTTGAAAGAGATGAAAGAAAAATGACAAATCTTAATATTTAAAGTCGCAATTCAAAACTGTGGAAGTGGACCACTCTGATGGCCGCCATCTACACATAAAAGTTCCTGAAGGCAATTGGTCCCATGAGAGTCGAAGAAAAAATAGGGAAGAGGGAAGCAAGCAGCTGAAGGGCTATTTATTATCTGTACGTGCATAAACTGCAATGTACTTGTGGTGGGGTTTTATGAATAGATATCATAGAACCGTAGGAAGAAGTCGAATTTCAAAAAAAAAACGGAATTTTCTTATTTCGTTTTTTGCTTCGAGATGGACTAATTGGAAAGGGGATCCCTTTTTCTGGGAAATTTTCGATTACAGGGGATGAGCTCCGTGTGATGGAGGTGGCTTTTCTTTGTGTATTGTTGTAGGAAAATGGAGTAGCCCTTYTTTTTTTTTTGAGTTCACAAGGGAAACTCAACACCGTTTAAAGCCAGATTATGATGAACATTACAGGATAGACTGAAACTAGTTTATCTGGAAAATTTCTAAAAATTTTAGAATCCTCTCGCCAGTTCCAGCCAAGGTATATCAGCTTCAGTCCTAAAAATTGCATTTTTGCGCTGAAATCGCGATTTTTGGTACCTAAACTATATATAACTCGGCTGGAACTGGTGAGCGGATTTTAAAATTTTCAGAGTTTTCTAGATAGACTATCCTCAATCTATACTGGAGGTTCCCTTGTTAGCTTGACATCTTATATGGTCTCCAAAACAATACATGACGAGAGAATTCGAAATGTAATGAGCAGAATACATTGTGGGCATAGCATAATTTTATAACTAATTGAAAGAATATGATGAGTAGCTAGCGAAATTTGAGAATGTTCCAGAATTCGAAATGATGAACTTTGCTGAAAGAGGTGTTAAAAATTTGAATGCAGCTAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCATAGAACCGTAGGAAGAAGT</pcr_primer_p1>
		<pcr_primer_p2>ATGTTCATCATAATCTGGCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ATCATAGAACCGTAGGAAGAAGTCGAATTTCAAAAAAAAAACGGAATTTTCTTATTTCGTTTTTTGCTTCGAGATGGACTAATTGGAAAGGGGATCCCTTTTTCTGGGAAATTTTCGATTACAGGGGATGAGCTCCGTGTGATGGAGGTGGCTTTTCTTTGTGTATTGTTGTAGGAAAATGGAGTAGCCCTTTTTTTTTTTTTGAGTTCACAAGGGAAACTCAACACCGTTTAAAGCCAGATTATGATGAACAT</canonical_amplicon>
		<polymorphic_amplicon>ATCATAGAACCGTAGGAAGAAGTCGAATTTCAAAAAAAAAACGGAATTTTCTTATTTCGTTTTTTGCTTCGAGATGGACTAATTGGAAAGGGGATCCCTTTTTCTGGGAAATTTTCGATTACAGGGGATGAGCTCCGTGTGATGGAGGTGGCTTTTCTTTGTGTATTGTTGTAGGAAAATGGAGTAGCCCTTYTTTTTTTTTTGAGTTCACAAGGGAAACTCAACACCGTTTAAAGCCAGATTATGATGAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb442</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>135996</contig_pos>
        <strand>+</strand>
        <context>CTCGGAACCT[C/T]GTAAATGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAATTGAATGTATCTGGAGGATAATCGTAATGATCACGGCTCGGAACCT</left_flank>
        <right_flank>GTAAATGTTTCCACCTGGAAAAAAACAGTATTTAAAAAATAGTGGATAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGAGAAAGGGTAGAAGAACTCTGATCTTCCCACCAACTTCATTTCGCTGTTTCGAAAAGATTTACTACGTTTTTGCTTCTTCTTCCTGCTTCGCACCCTTTTTAAAGAGCTCGAAAATAGGCGGAGCCTATTTTTCAAACCCAAAGGTATCATTATTTTTTAAATTGGTTCCACCCAATTATACATCCAATTACAGTATCCCCCCGTTAGGATTTATTTGTTTACGTGATTTTTTCACAAAACAAGACTCACACGTTGCGAAAGAGCCGGATACGCTTGTCCGCCACCTCCACCGCCAGGTCCTTTTGGTGGTTGCTGTCCTGGATAGATGGGCATTCCATTCGGTCCTATCTTTGGGAGATTGATTACGCCAACGGTTGGGTTGCTTCTGAAACTGTGAAATGATGAGAATAAAAGTGAGGGGGTGGATTCCTACTTTGGTGGCTCTGAATTGAATGTATCTGGAGGATAATCGTAATGATCACGGCTCGGAACCTTGTAAATGTTTCCACCTGGAAAAAAACAGTATTTAAAAAATAGTGGATAAACATAAATAGACACAATACTGAAGCACAAGATAAGCATACAGAACCGAAGCTCCACAAACACTGATAAAGAGAAAAATTTGGAAACATATATGGATAGCTACAGATGGAATCAAATTTACCCTAGTCAAAAGAATGGGAAAGAGGACAATTGAAACGAAACCAAGACAATGACATAAAACCAAATGAATATACCAAACATAATGAACATTGGACACACTTACATACCAGACACGTCGGGTATATGGTCATAAATGTTCTCGTCGTCTATAAAAAGCTGCGTCAGAGAATGTCCCAATGCTACCGACACGGACTGCTCCGTTTCACACTACTATTGATATCATGCACAAAACTAAAACTAAATGAATACCTTGTGGCAGCTCATTTGGGTGACGATTCGGTGGCGGCGGAATAACAAAGTTGGAATTTGATTGAACGCCTCCTCCGGTCTGT</canonical>
            <polymorphic>GAAGAGAAAGGGTAGAAGAACTCTGATCTTCCCACCAACTTCATTTCGCTGTTTCGAAAAGATTTACTACGTTTTTGCTTCTTCTTCCTGCTTCGCACCCTTTTTAAAGAGCTCGAAAATAGGCGGAGCCTATTTTTCAAACCCAAAGGTATCATTATTTTTTAAATTGGTTCCACCCAATTATACATCCAATTACAGTATCCCCCCGTTAGGATTTATTTGTTTACGTGATTTTTTCACAAAACAAGACTCACACGTTGCGAAAGAGCCGGATACGCTTGTCCGCCACCTCCACCGCCAGGTCCTTTTGGTGGTTGCTGTCCTGGATAGATGGGCATTCCATTCGGTCCTATCTTTGGGAGATTGATTACGCCAACGGTTGGGTTGCTTCTGAAACTGTGAAATGATGAGAATAAAAGTGAGGGGGTGGATTCCTACTTTGGTGGCTCTGAATTGAATGTATCTGGAGGATAATCGTAATGATCACGGCTCGGAACCTYGTAAATGTTTCCACCTGGAAAAAAACAGTATTTAAAAAATAGTGGATAAACATAAATAGACACAATACTGAAGCACAAGATAAGCATACAGAACCGAAGCTCCACAAACACTGATAAAGAGAAAAATTTGGAAACATATATGGATAGCTACAGATGGAATCAAATTTACCCTAGTCAAAAGAATGGGAAAGAGGACAATTGAAACGAAACCAAGACAATGACATAAAACCAAATGAATATACCAAACATAATGAACATTGGACACACTTACATACCAGACACGTCGGGTATATGGTCATAAATGTTCTCGTCGTCTATAAAAAGCTGCGTCAGAGAATGTCCCAATGCTACCGACACGGACTGCTCCGTTTCACACTACTATTGATATCATGCACAAAACTAAAACTAAATGAATACCTTGTGGCAGCTCATTTGGGTGACGATTCGGTGGCGGCGGAATAACAAAGTTGGAATTTGATTGAACGCCTCCTCCGGTCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTATCTTTGGGAGATTGATTAC</pcr_primer_p1>
		<pcr_primer_p2>GTTCTGTATGCTTATCTTGTGCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CCTATCTTTGGGAGATTGATTACGCCAACGGTTGGGTTGCTTCTGAAACTGTGAAATGATGAGAATAAAAGTGAGGGGGTGGATTCCTACTTTGGTGGCTCTGAATTGAATGTATCTGGAGGATAATCGTAATGATCACGGCTCGGAACCTTGTAAATGTTTCCACCTGGAAAAAAACAGTATTTAAAAAATAGTGGATAAACATAAATAGACACAATACTGAAGCACAAGATAAGCATACAGAAC</canonical_amplicon>
		<polymorphic_amplicon>CCTATCTTTGGGAGATTGATTACGCCAACGGTTGGGTTGCTTCTGAAACTGTGAAATGATGAGAATAAAAGTGAGGGGGTGGATTCCTACTTTGGTGGCTCTGAATTGAATGTATCTGGAGGATAATCGTAATGATCACGGCTCGGAACCTYGTAAATGTTTCCACCTGGAAAAAAACAGTATTTAAAAAATAGTGGATAAACATAAATAGACACAATACTGAAGCACAAGATAAGCATACAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb444</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>155386</contig_pos>
        <strand>+</strand>
        <context>AGCAAAAATA[A/G]TGACACGTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTCTCCCCTCCAGTTTTGACTAAATGATGAGGTCGTGCAGCAAAAATA</left_flank>
        <right_flank>TGACACGTCTGGGGTCTATCTGGAGTGATATGATGGGCGACAAGTGTGTC</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTTTTCTACATTGACTCGACTTGAAAAAATACTTCTGGATTTGTTGACTGGACTCGAAAGTCAAGTGGACACATGTCAGATATAACTGACGAATTCCTCAGATTTCTTATTGGGTTTCGAGTCAGATTACTATAATGATGAGATTATGAGGACATATTGTAACTAGAAGTACAAAAAGCCCCGACCGAAATAAAATAATGAAAATATTAAAGTCTTGAAGTTTCCTCAAAGTCATATTGAATTTTTGGGCCAGATTTCGAGCCAGACCCGATAAACATCTAAGGATCTCTTTAGTTCCAAGTTCACATGAAGAACTCTTAAATTAGCTAAATTCTGAGCTCTCCGGAAACTGAAATTTCTAGTCTTTACTCTATCCATACGCTATTACGTAAATCATTAACAGCCAACATCATCTAAGATGTATTCCCAAGTATACATCTGGAAATAAATTCTCCCCTCCAGTTTTGACTAAATGATGAGGTCGTGCAGCAAAAATAGTGACACGTCTGGGGTCTATCTGGAGTGATATGATGGGCGACAAGTGTGTCTCGAATTTATCTTTGCTCTTATGACAGTTGACTGGATATAAACTATGAAGGATTTCGAGATGACGAAAATAAATATATCCGATTTCTAACCTCTGAAAAAAAAAAGATTTGATGAATGAATAAAGACAAAAAACGGAAGGAATTTAGTGGTTCCCAAACTCTCGTGGTCTCCATATCTCTATAGAGGACGTATACGTAAGTTCCTGAATTATTGAGTCCCCGCGAAGACGACAAAAGGCATGATGAAACTGAACTTCAGCCGATGAAAGAGAAACGCGTGTGGGAGTGTAAAAAGCTTTTGACCTACATATGGTCTCAGAAAAAATAAACAATAACAGGGTTCATTGTTTGAAAATTGAGAAGAGTGTTTTGTGAAAAATGGACACATGCACTTGCAACTGGGACGTCAGTTTTTGAAACAAGAGAGATCTATGGACTGGATGGTGTCGA</canonical>
            <polymorphic>TGTTTTTCTACATTGACTCGACTTGAAAAAATACTTCTGGATTTGTTGACTGGACTCGAAAGTCAAGTGGACACATGTCAGATATAACTGACGAATTCCTCAGATTTCTTATTGGGTTTCGAGTCAGATTACTATAATGATGAGATTATGAGGACATATTGTAACTAGAAGTACAAAAAGCCCCGACCGAAATAAAATAATGAAAATATTAAAGTCTTGAAGTTTCCTCAAAGTCATATTGAATTTTTGGGCCAGATTTCGAGCCAGACCCGATAAACATCTAAGGATCTCTTTAGTTCCAAGTTCACATGAAGAACTCTTAAATTAGCTAAATTCTGAGCTCTCCGGAAACTGAAATTTCTAGTCTTTACTCTATCCATACGCTATTACGTAAATCATTAACAGCCAACATCATCTAAGATGTATTCCCAAGTATACATCTGGAAATAAATTCTCCCCTCCAGTTTTGACTAAATGATGAGGTCGTGCAGCAAAAATARTGACACGTCTGGGGTCTATCTGGAGTGATATGATGGGCGACAAGTGTGTCTCGAATTTATCTTTGCTCTTATGACAGTTGACTGGATATAAACTATGAAGGATTTCGAGATGACGAAAATAAATATATCCGATTTCTAACCTCTGAAAAAAAAAAGATTTGATGAATGAATAAAGACAAAAAACGGAAGGAATTTAGTGGTTCCCAAACTCTCGTGGTCTCCATATCTCTATAGAGGACGTATACGTAAGTTCCTGAATTATTGAGTCCCCGCGAAGACGACAAAAGGCATGATGAAACTGAACTTCAGCCGATGAAAGAGAAACGCGTGTGGGAGTGTAAAAAGCTTTTGACCTACATATGGTCTCAGAAAAAATAAACAATAACAGGGTTCATTGTTTGAAAATTGAGAAGAGTGTTTTGTGAAAAATGGACACATGCACTTGCAACTGGGACGTCAGTTTTTGAAACAAGAGAGATCTATGGACTGGATGGTGTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>234 181 151 114 79 69 55 22 19 17 14 11 7 6 6 4 4 3 2 2</canonical_bands>
                <polymorphic_bands>234 181 151 114 79 69 55 22 19 17 17 11 7 6 6 4 4 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 339 160</canonical_bands>
                <polymorphic_bands>840 160</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTAACAGCCAACATCATCTAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCAGAGGTTAGAAATCGGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTAACAGCCAACATCATCTAAGATGTATTCCCAAGTATACATCTGGAAATAAATTCTCCCCTCCAGTTTTGACTAAATGATGAGGTCGTGCAGCAAAAATAGTGACACGTCTGGGGTCTATCTGGAGTGATATGATGGGCGACAAGTGTGTCTCGAATTTATCTTTGCTCTTATGACAGTTGACTGGATATAAACTATGAAGGATTTCGAGATGACGAAAATAAATATATCCGATTTCTAACCTCTGAA</canonical_amplicon>
		<polymorphic_amplicon>ATTAACAGCCAACATCATCTAAGATGTATTCCCAAGTATACATCTGGAAATAAATTCTCCCCTCCAGTTTTGACTAAATGATGAGGTCGTGCAGCAAAAATARTGACACGTCTGGGGTCTATCTGGAGTGATATGATGGGCGACAAGTGTGTCTCGAATTTATCTTTGCTCTTATGACAGTTGACTGGATATAAACTATGAAGGATTTCGAGATGACGAAAATAAATATATCCGATTTCTAACCTCTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb445</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>155731</contig_pos>
        <strand>+</strand>
        <context>AGTGTAAAAA[G/T]CTTTTGACCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAACTGAACTTCAGCCGATGAAAGAGAAACGCGTGTGGGAGTGTAAAAA</left_flank>
        <right_flank>CTTTTGACCTACATATGGTCTCAGAAAAAATAAACAATAACAGGGTTCAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGAAACTGAAATTTCTAGTCTTTACTCTATCCATACGCTATTACGTAAATCATTAACAGCCAACATCATCTAAGATGTATTCCCAAGTATACATCTGGAAATAAATTCTCCCCTCCAGTTTTGACTAAATGATGAGGTCGTGCAGCAAAAATAGTGACACGTCTGGGGTCTATCTGGAGTGATATGATGGGCGACAAGTGTGTCTCGAATTTATCTTTGCTCTTATGACAGTTGACTGGATATAAACTATGAAGGATTTCGAGATGACGAAAATAAATATATCCGATTTCTAACCTCTGAAAAAAAAAAGATTTGATGAATGAATAAAGACAAAAAACGGAAGGAATTTAGTGGTTCCCAAACTCTCGTGGTCTCCATATCTCTATAGAGGACGTATACGTAAGTTCCTGAATTATTGAGTCCCCGCGAAGACGACAAAAGGCATGATGAAACTGAACTTCAGCCGATGAAAGAGAAACGCGTGTGGGAGTGTAAAAAGCTTTTGACCTACATATGGTCTCAGAAAAAATAAACAATAACAGGGTTCATTGTTTGAAAATTGAGAAGAGTGTTTTGTGAAAAATGGACACATGCACTTGCAACTGGGACGTCAGTTTTTGAAACAAGAGAGATCTATGGACTGGATGGTGTCGAGGTCCCAGGAGAGTCTAGGAAGAAGGAAAAATTACTATAAAGTGGCTTCATAGATTTTCAACCCATATAACACTCTGCTATGGTCTTACCTACTACTCTGGTCTAAATTTAAAGCGCATTGCGGCCGAGTTCTCGAGGGTGGTANTCCTAAAACACGCGACTGGCACTTGATCCAGGAGACCCATAGGTATTATGGGGTGCTGAATCGAATGGCATTAGCAGTTTTTCTCCAAAATTTTTATTTTTTCTGAAAACCTCAAAATATGGAGTGGTTCTATTATTACGCGCACTGTACTGTAAGTTATCTAGAAACTAAAATGTCTAGACTACAGGTTGGTTTTCTGT</canonical>
            <polymorphic>CGGAAACTGAAATTTCTAGTCTTTACTCTATCCATACGCTATTACGTAAATCATTAACAGCCAACATCATCTAAGATGTATTCCCAAGTATACATCTGGAAATAAATTCTCCCCTCCAGTTTTGACTAAATGATGAGGTCGTGCAGCAAAAATAGTGACACGTCTGGGGTCTATCTGGAGTGATATGATGGGCGACAAGTGTGTCTCGAATTTATCTTTGCTCTTATGACAGTTGACTGGATATAAACTATGAAGGATTTCGAGATGACGAAAATAAATATATCCGATTTCTAACCTCTGAAAAAAAAAAGATTTGATGAATGAATAAAGACAAAAAACGGAAGGAATTTAGTGGTTCCCAAACTCTCGTGGTCTCCATATCTCTATAGAGGACGTATACGTAAGTTCCTGAATTATTGAGTCCCCGCGAAGACGACAAAAGGCATGATGAAACTGAACTTCAGCCGATGAAAGAGAAACGCGTGTGGGAGTGTAAAAAKCTTTTGACCTACATATGGTCTCAGAAAAAATAAACAATAACAGGGTTCATTGTTTGAAAATTGAGAAGAGTGTTTTGTGAAAAATGGACACATGCACTTGCAACTGGGACGTCAGTTTTTGAAACAAGAGAGATCTATGGACTGGATGGTGTCGAGGTCCCAGGAGAGTCTAGGAAGAAGGAAAAATTACTATAAAGTGGCTTCATAGATTTTCAACCCATATAACACTCTGCTATGGTCTTACCTACTACTCTGGTCTAAATTTAAAGCGCATTGCGGCCGAGTTCTCGAGGGTGGTANTCCTAAAACACGCGACTGGCACTTGATCCAGGAGACCCATAGGTATTATGGGGTGCTGAATCGAATGGCATTAGCAGTTTTTCTCCAAAATTTTTATTTTTTCTGAAAACCTCAAAATATGGAGTGGTTCTATTATTACGCGCACTGTACTGTAAGTTATCTAGAAACTAAAATGTCTAGACTACAGGTTGGTTTTCTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>404 221 200 79 60 36</canonical_bands>
                <polymorphic_bands>404 236 221 79 60</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAAGTTCCTGAATTATTGAGTCC</pcr_primer_p1>
		<pcr_primer_p2>GTCCATAGATCTCTCTTGTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTAAGTTCCTGAATTATTGAGTCCCCGCGAAGACGACAAAAGGCATGATGAAACTGAACTTCAGCCGATGAAAGAGAAACGCGTGTGGGAGTGTAAAAAGCTTTTGACCTACATATGGTCTCAGAAAAAATAAACAATAACAGGGTTCATTGTTTGAAAATTGAGAAGAGTGTTTTGTGAAAAATGGACACATGCACTTGCAACTGGGACGTCAGTTTTTGAAACAAGAGAGATCTATGGAC</canonical_amplicon>
		<polymorphic_amplicon>GTAAGTTCCTGAATTATTGAGTCCCCGCGAAGACGACAAAAGGCATGATGAAACTGAACTTCAGCCGATGAAAGAGAAACGCGTGTGGGAGTGTAAAAAKCTTTTGACCTACATATGGTCTCAGAAAAAATAAACAATAACAGGGTTCATTGTTTGAAAATTGAGAAGAGTGTTTTGTGAAAAATGGACACATGCACTTGCAACTGGGACGTCAGTTTTTGAAACAAGAGAGATCTATGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb446</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>159450</contig_pos>
        <strand>+</strand>
        <context>GGTTTCTAAA[C/T]AAAAATAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAACAAAATACTCAAAACACTTCTCACAGCCAGAAATCAGGTTTCTAAA</left_flank>
        <right_flank>AAAAATAATTCGCTTCTTTGAAAAAAACTAGACAAATGAAAAGAAAAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTTTTTTTTTCGGTTTTTAGATGAACAGGAATATAAAAAAACGACATGAATAAAACTACCAGAAAATTTAAAAAAAAACAAAAATGTCTGCAATAACCAGGAAGATAAATTGCACAGCTAGGGATACAATAGATCTTTCGACAGTGCATCCACTATGAACTATAAAATTAAAGAGTTGAGTGAAAATTTTTGGAAAATAGAAGGGCCTCCTCTAATGGAAAGACCATGTAACAGAAGGACATCCTGAAGGTACCTTAGAAAAATTGAATGGTCTGCCCTTCTAATATAGGTTTTACGGTAAGCCAAAAAACAATTGAGAAGTCAATGAGATTCCGTTATGTTCTATTTTCTCTCAAAGATCTTTATAATGGTTTTTGTTTGCTGCCTGACCTATTCCAGCTAATCGTGTATTGTTCGTTTTGATGAATAAGAGAAATTATTAATGAGATAACAAAATACTCAAAACACTTCTCACAGCCAGAAATCAGGTTTCTAAACAAAAATAATTCGCTTCTTTGAAAAAAACTAGACAAATGAAAAGAAAAAACAAGGGAAGAAACCCAGTAAGAAGTGCATGGGCGGGAAGCAAATTAGCCATTCGGGAACATTCATTCTTCCTCTTCTCTCCATGGTGGTGCACAACAAATGAACTTGAACGGAATAGACAAACTGAGTGAGTAGAAAATGAATCTAGGTATCGGAAAAAACAAAGTTGTCTGAAAGCGATTTGTTTTCGCTGCGAGCTTCTCGATTATTCTCCTAGTGTTTTTCAATGTTTTTTCTATGAAAAGGAAGTGAAATCGGTGAATTAAATAGTTCTGGAAATATGAAATGACTTGAAAAAAAGTTCAATAAATAAACTCCCGGTGATTGGAATAAAGCTTACATATTCGGTTCAAAACAGTTACAGTATAACCTGTTAGAGAAAATCCGCCGAACTTTTAACTTTGAGCCAATTTATTTCGATTTCTGCCAAAAAAGGTCAACTGTGAATATAG</canonical>
            <polymorphic>CAGTTTTTTTTTCGGTTTTTAGATGAACAGGAATATAAAAAAACGACATGAATAAAACTACCAGAAAATTTAAAAAAAAACAAAAATGTCTGCAATAACCAGGAAGATAAATTGCACAGCTAGGGATACAATAGATCTTTCGACAGTGCATCCACTATGAACTATAAAATTAAAGAGTTGAGTGAAAATTTTTGGAAAATAGAAGGGCCTCCTCTAATGGAAAGACCATGTAACAGAAGGACATCCTGAAGGTACCTTAGAAAAATTGAATGGTCTGCCCTTCTAATATAGGTTTTACGGTAAGCCAAAAAACAATTGAGAAGTCAATGAGATTCCGTTATGTTCTATTTTCTCTCAAAGATCTTTATAATGGTTTTTGTTTGCTGCCTGACCTATTCCAGCTAATCGTGTATTGTTCGTTTTGATGAATAAGAGAAATTATTAATGAGATAACAAAATACTCAAAACACTTCTCACAGCCAGAAATCAGGTTTCTAAAYAAAAATAATTCGCTTCTTTGAAAAAAACTAGACAAATGAAAAGAAAAAACAAGGGAAGAAACCCAGTAAGAAGTGCATGGGCGGGAAGCAAATTAGCCATTCGGGAACATTCATTCTTCCTCTTCTCTCCATGGTGGTGCACAACAAATGAACTTGAACGGAATAGACAAACTGAGTGAGTAGAAAATGAATCTAGGTATCGGAAAAAACAAAGTTGTCTGAAAGCGATTTGTTTTCGCTGCGAGCTTCTCGATTATTCTCCTAGTGTTTTTCAATGTTTTTTCTATGAAAAGGAAGTGAAATCGGTGAATTAAATAGTTCTGGAAATATGAAATGACTTGAAAAAAAGTTCAATAAATAAACTCCCGGTGATTGGAATAAAGCTTACATATTCGGTTCAAAACAGTTACAGTATAACCTGTTAGAGAAAATCCGCCGAACTTTTAACTTTGAGCCAATTTATTTCGATTTCTGCCAAAAAAGGTCAACTGTGAATATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGTTTTGATGAATAAGAGAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTCTATTCCGTTCAAGTTCATT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCGTTTTGATGAATAAGAGAAATTATTAATGAGATAACAAAATACTCAAAACACTTCTCACAGCCAGAAATCAGGTTTCTAAACAAAAATAATTCGCTTCTTTGAAAAAAACTAGACAAATGAAAAGAAAAAACAAGGGAAGAAACCCAGTAAGAAGTGCATGGGCGGGAAGCAAATTAGCCATTCGGGAACATTCATTCTTCCTCTTCTCTCCATGGTGGTGCACAACAAATGAACTTGAACGGAATAGAC</canonical_amplicon>
		<polymorphic_amplicon>TCGTTTTGATGAATAAGAGAAATTATTAATGAGATAACAAAATACTCAAAACACTTCTCACAGCCAGAAATCAGGTTTCTAAAYAAAAATAATTCGCTTCTTTGAAAAAAACTAGACAAATGAAAAGAAAAAACAAGGGAAGAAACCCAGTAAGAAGTGCATGGGCGGGAAGCAAATTAGCCATTCGGGAACATTCATTCTTCCTCTTCTCTCCATGGTGGTGCACAACAAATGAACTTGAACGGAATAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb447</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>232279</contig_pos>
        <strand>+</strand>
        <context>GCGAGTTTAT[A/C]TTTGAGAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTCTTCCTGATCTCTTCATTCCTTTCAATCATAGCAAAGTGCGAGTTTAT</left_flank>
        <right_flank>TTTGAGAATTTCTATTTCCTCCAGCATGGGATGGTTTTTACTACTCCTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTATTCGATCCGATCGAATTCACTAACCAACACAGCTGAGAAAATCTGAAAAACAAAACTGATAAAAAGATTTGAAAAATTGAAAAAATGGAAAGTCAGATACAGTAAATAAATATAATGGAGCAAAAATTAAAGATGTTGGCAAACCAAAACTGAACATTTCTTTAATAATTCAGATGTACATTGATAGAGAACACAGATAGAGATATCCCCCAATTTCCACTGTCCCGCCATAATCTCATGTTAAACCTACATACGCCATCTTCGGCATTCTCGATGGATGCCGTTCGCCGACGATCATCTAACGAGAATGAATAATTCGAAAATTCTACTTAACGACGTAATTCCGTTCACTCATTGTCTGTTCATCTGTTGGAACTTGCTTTCCTCCTGAGGACAACACCAAAAAAGATAAGACAAATGGTCTTGCCCCTCCCTTCTTCAATCTCTTCCTGATCTCTTCATTCCTTTCAATCATAGCAAAGTGCGAGTTTATCTTTGAGAATTTCTATTTCCTCCAGCATGGGATGGTTTTTACTACTCCTGTTAACTTCATTCTTTGGTTTCGAACATCCTAAACTGGTAAATGCATGCCTTGCATCTCGATCTCCTAGTACACCAGTGGTTACTACAGCAGCACCTACAGAAGCACCTACAGAAGCACCTACAGAAGCACCTACAGAAGCACCTACAGAAGCACCTACAGAAGCACCTACTGTAGCACCTGAAATTCGTATGTTCGAATTCTCATTTTTATTAAATGATTTTATGTGTGATTATTCCAGGAACATGCTCTGCATCAACAATTACCTATGGCATGGGTGATACAAATAACCCACAACAACAAGTCGATGTGACTAATTTTGGGTATCACCTGTTAACCATCAACTTTTTCAAACAATTCTCTTCAGTTTAACTTCAACTCAAATTGCTGGAACTCAGGATTCAATTTCCACGATGAAAATTTCATGCATGGCAAATGATGGGTATTATGTGA</canonical>
            <polymorphic>AAGTTATTCGATCCGATCGAATTCACTAACCAACACAGCTGAGAAAATCTGAAAAACAAAACTGATAAAAAGATTTGAAAAATTGAAAAAATGGAAAGTCAGATACAGTAAATAAATATAATGGAGCAAAAATTAAAGATGTTGGCAAACCAAAACTGAACATTTCTTTAATAATTCAGATGTACATTGATAGAGAACACAGATAGAGATATCCCCCAATTTCCACTGTCCCGCCATAATCTCATGTTAAACCTACATACGCCATCTTCGGCATTCTCGATGGATGCCGTTCGCCGACGATCATCTAACGAGAATGAATAATTCGAAAATTCTACTTAACGACGTAATTCCGTTCACTCATTGTCTGTTCATCTGTTGGAACTTGCTTTCCTCCTGAGGACAACACCAAAAAAGATAAGACAAATGGTCTTGCCCCTCCCTTCTTCAATCTCTTCCTGATCTCTTCATTCCTTTCAATCATAGCAAAGTGCGAGTTTATMTTTGAGAATTTCTATTTCCTCCAGCATGGGATGGTTTTTACTACTCCTGTTAACTTCATTCTTTGGTTTCGAACATCCTAAACTGGTAAATGCATGCCTTGCATCTCGATCTCCTAGTACACCAGTGGTTACTACAGCAGCACCTACAGAAGCACCTACAGAAGCACCTACAGAAGCACCTACAGAAGCACCTACAGAAGCACCTACAGAAGCACCTACTGTAGCACCTGAAATTCGTATGTTCGAATTCTCATTTTTATTAAATGATTTTATGTGTGATTATTCCAGGAACATGCTCTGCATCAACAATTACCTATGGCATGGGTGATACAAATAACCCACAACAACAAGTCGATGTGACTAATTTTGGGTATCACCTGTTAACCATCAACTTTTTCAAACAATTCTCTTCAGTTTAACTTCAACTCAAATTGCTGGAACTCAGGATTCAATTTCCACGATGAAAATTTCATGCATGGCAAATGATGGGTATTATGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCGAAAATTCTACTTAACGAC</pcr_primer_p1>
		<pcr_primer_p2>AAACCAAAGAATGAAGTTAACAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTCGAAAATTCTACTTAACGACGTAATTCCGTTCACTCATTGTCTGTTCATCTGTTGGAACTTGCTTTCCTCCTGAGGACAACACCAAAAAAGATAAGACAAATGGTCTTGCCCCTCCCTTCTTCAATCTCTTCCTGATCTCTTCATTCCTTTCAATCATAGCAAAGTGCGAGTTTATCTTTGAGAATTTCTATTTCCTCCAGCATGGGATGGTTTTTACTACTCCTGTTAACTTCATTCTTTGGTTT</canonical_amplicon>
		<polymorphic_amplicon>AATTCGAAAATTCTACTTAACGACGTAATTCCGTTCACTCATTGTCTGTTCATCTGTTGGAACTTGCTTTCCTCCTGAGGACAACACCAAAAAAGATAAGACAAATGGTCTTGCCCCTCCCTTCTTCAATCTCTTCCTGATCTCTTCATTCCTTTCAATCATAGCAAAGTGCGAGTTTATMTTTGAGAATTTCTATTTCCTCCAGCATGGGATGGTTTTTACTACTCCTGTTAACTTCATTCTTTGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb448</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>232300</contig_pos>
        <strand>+</strand>
        <context>TCTATTTCCT[C/T]CAGCATGGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTCAATCATAGCAAAGTGCGAGTTTATCTTTGAGAATTTCTATTTCCT</left_flank>
        <right_flank>CAGCATGGGATGGTTTTTACTACTCCTGTTAACTTCATTCTTTGGTTTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCACTAACCAACACAGCTGAGAAAATCTGAAAAACAAAACTGATAAAAAGATTTGAAAAATTGAAAAAATGGAAAGTCAGATACAGTAAATAAATATAATGGAGCAAAAATTAAAGATGTTGGCAAACCAAAACTGAACATTTCTTTAATAATTCAGATGTACATTGATAGAGAACACAGATAGAGATATCCCCCAATTTCCACTGTCCCGCCATAATCTCATGTTAAACCTACATACGCCATCTTCGGCATTCTCGATGGATGCCGTTCGCCGACGATCATCTAACGAGAATGAATAATTCGAAAATTCTACTTAACGACGTAATTCCGTTCACTCATTGTCTGTTCATCTGTTGGAACTTGCTTTCCTCCTGAGGACAACACCAAAAAAGATAAGACAAATGGTCTTGCCCCTCCCTTCTTCAATCTCTTCCTGATCTCTTCATTCCTTTCAATCATAGCAAAGTGCGAGTTTATCTTTGAGAATTTCTATTTCCTCCAGCATGGGATGGTTTTTACTACTCCTGTTAACTTCATTCTTTGGTTTCGAACATCCTAAACTGGTAAATGCATGCCTTGCATCTCGATCTCCTAGTACACCAGTGGTTACTACAGCAGCACCTACAGAAGCACCTACAGAAGCACCTACAGAAGCACCTACAGAAGCACCTACAGAAGCACCTACAGAAGCACCTACTGTAGCACCTGAAATTCGTATGTTCGAATTCTCATTTTTATTAAATGATTTTATGTGTGATTATTCCAGGAACATGCTCTGCATCAACAATTACCTATGGCATGGGTGATACAAATAACCCACAACAACAAGTCGATGTGACTAATTTTGGGTATCACCTGTTAACCATCAACTTTTTCAAACAATTCTCTTCAGTTTAACTTCAACTCAAATTGCTGGAACTCAGGATTCAATTTCCACGATGAAAATTTCATGCATGGCAAATGATGGGTATTATGTGAACATGGATTTTAATGACGGTG</canonical>
            <polymorphic>TTCACTAACCAACACAGCTGAGAAAATCTGAAAAACAAAACTGATAAAAAGATTTGAAAAATTGAAAAAATGGAAAGTCAGATACAGTAAATAAATATAATGGAGCAAAAATTAAAGATGTTGGCAAACCAAAACTGAACATTTCTTTAATAATTCAGATGTACATTGATAGAGAACACAGATAGAGATATCCCCCAATTTCCACTGTCCCGCCATAATCTCATGTTAAACCTACATACGCCATCTTCGGCATTCTCGATGGATGCCGTTCGCCGACGATCATCTAACGAGAATGAATAATTCGAAAATTCTACTTAACGACGTAATTCCGTTCACTCATTGTCTGTTCATCTGTTGGAACTTGCTTTCCTCCTGAGGACAACACCAAAAAAGATAAGACAAATGGTCTTGCCCCTCCCTTCTTCAATCTCTTCCTGATCTCTTCATTCCTTTCAATCATAGCAAAGTGCGAGTTTATCTTTGAGAATTTCTATTTCCTYCAGCATGGGATGGTTTTTACTACTCCTGTTAACTTCATTCTTTGGTTTCGAACATCCTAAACTGGTAAATGCATGCCTTGCATCTCGATCTCCTAGTACACCAGTGGTTACTACAGCAGCACCTACAGAAGCACCTACAGAAGCACCTACAGAAGCACCTACAGAAGCACCTACAGAAGCACCTACAGAAGCACCTACTGTAGCACCTGAAATTCGTATGTTCGAATTCTCATTTTTATTAAATGATTTTATGTGTGATTATTCCAGGAACATGCTCTGCATCAACAATTACCTATGGCATGGGTGATACAAATAACCCACAACAACAAGTCGATGTGACTAATTTTGGGTATCACCTGTTAACCATCAACTTTTTCAAACAATTCTCTTCAGTTTAACTTCAACTCAAATTGCTGGAACTCAGGATTCAATTTCCACGATGAAAATTTCATGCATGGCAAATGATGGGTATTATGTGAACATGGATTTTAATGACGGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTTCATTCCTTTCAATCATAG</pcr_primer_p1>
		<pcr_primer_p2>TTCTGTAGGTGCTTCTGTAGGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTCTTCATTCCTTTCAATCATAGCAAAGTGCGAGTTTATCTTTGAGAATTTCTATTTCCTCCAGCATGGGATGGTTTTTACTACTCCTGTTAACTTCATTCTTTGGTTTCGAACATCCTAAACTGGTAAATGCATGCCTTGCATCTCGATCTCCTAGTACACCAGTGGTTACTACAGCAGCACCTACAGAAGCACCTACAGAA</canonical_amplicon>
		<polymorphic_amplicon>CTCTTCATTCCTTTCAATCATAGCAAAGTGCGAGTTTATCTTTGAGAATTTCTATTTCCTYCAGCATGGGATGGTTTTTACTACTCCTGTTAACTTCATTCTTTGGTTTCGAACATCCTAAACTGGTAAATGCATGCCTTGCATCTCGATCTCCTAGTACACCAGTGGTTACTACAGCAGCACCTACAGAAGCACCTACAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb449</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>232762</contig_pos>
        <strand>+</strand>
        <context>TGCATGGCAA[A/T]TGATGGGTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGCTGGAACTCAGGATTCAATTTCCACGATGAAAATTTCATGCATGGCAA</left_flank>
        <right_flank>TGATGGGTATTATGTGAACATGGATTTTAATGACGGTGGACAAGTTAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAGTGCGAGTTTATCTTTGAGAATTTCTATTTCCTCCAGCATGGGATGGTTTTTACTACTCCTGTTAACTTCATTCTTTGGTTTCGAACATCCTAAACTGGTAAATGCATGCCTTGCATCTCGATCTCCTAGTACACCAGTGGTTACTACAGCAGCACCTACAGAAGCACCTACAGAAGCACCTACAGAAGCACCTACAGAAGCACCTACAGAAGCACCTACAGAAGCACCTACTGTAGCACCTGAAATTCGTATGTTCGAATTCTCATTTTTATTAAATGATTTTATGTGTGATTATTCCAGGAACATGCTCTGCATCAACAATTACCTATGGCATGGGTGATACAAATAACCCACAACAACAAGTCGATGTGACTAATTTTGGGTATCACCTGTTAACCATCAACTTTTTCAAACAATTCTCTTCAGTTTAACTTCAACTCAAATTGCTGGAACTCAGGATTCAATTTCCACGATGAAAATTTCATGCATGGCAAATGATGGGTATTATGTGAACATGGATTTTAATGACGGTGGACAAGTTAAAGAAAACTTAGATGAAATCCAAAATATAACTGTCGAAGTCACATGTGACAGTCGTACTATGGAGTGGATATATTCTTCCGTTTTAGACAATGGAGACGTACACACACACACACGGTTACTTCCGTAGAGTGTCTCCAAAATGAAGAAATTCCACTCAGTAAGTAACTGGACCTTACTATCTTTTTTCAATATTTTTTCAGATGCTTGCTCACCGACGGACATCACTTACCTACGAGATGATCCAGATTTTTACGTGGAAGTCACAGACTTTGGGTATGATTTATAAGTCAATATTGCCTGGTAATTACAAATTTCAGATTCGCATCAACTCGAATTCCGGATACTACTGAAACCATTTCCACAATGAAAATTTCATGTATGGCAATTGATGGAAACTATGTGAACATGGATTTTAATGGAGGTTTTCAAGCCGAAGACAACTTGAATAAGAT</canonical>
            <polymorphic>CAAAGTGCGAGTTTATCTTTGAGAATTTCTATTTCCTCCAGCATGGGATGGTTTTTACTACTCCTGTTAACTTCATTCTTTGGTTTCGAACATCCTAAACTGGTAAATGCATGCCTTGCATCTCGATCTCCTAGTACACCAGTGGTTACTACAGCAGCACCTACAGAAGCACCTACAGAAGCACCTACAGAAGCACCTACAGAAGCACCTACAGAAGCACCTACAGAAGCACCTACTGTAGCACCTGAAATTCGTATGTTCGAATTCTCATTTTTATTAAATGATTTTATGTGTGATTATTCCAGGAACATGCTCTGCATCAACAATTACCTATGGCATGGGTGATACAAATAACCCACAACAACAAGTCGATGTGACTAATTTTGGGTATCACCTGTTAACCATCAACTTTTTCAAACAATTCTCTTCAGTTTAACTTCAACTCAAATTGCTGGAACTCAGGATTCAATTTCCACGATGAAAATTTCATGCATGGCAAWTGATGGGTATTATGTGAACATGGATTTTAATGACGGTGGACAAGTTAAAGAAAACTTAGATGAAATCCAAAATATAACTGTCGAAGTCACATGTGACAGTCGTACTATGGAGTGGATATATTCTTCCGTTTTAGACAATGGAGACGTACACACACACACACGGTTACTTCCGTAGAGTGTCTCCAAAATGAAGAAATTCCACTCAGTAAGTAACTGGACCTTACTATCTTTTTTCAATATTTTTTCAGATGCTTGCTCACCGACGGACATCACTTACCTACGAGATGATCCAGATTTTTACGTGGAAGTCACAGACTTTGGGTATGATTTATAAGTCAATATTGCCTGGTAATTACAAATTTCAGATTCGCATCAACTCGAATTCCGGATACTACTGAAACCATTTCCACAATGAAAATTTCATGTATGGCAATTGATGGAAACTATGTGAACATGGATTTTAATGGAGGTTTTCAAGCCGAAGACAACTTGAATAAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGTGACTAATTTTGGGTATCA</pcr_primer_p1>
		<pcr_primer_p2>ACTCCATAGTACGACTGTCACAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GATGTGACTAATTTTGGGTATCACCTGTTAACCATCAACTTTTTCAAACAATTCTCTTCAGTTTAACTTCAACTCAAATTGCTGGAACTCAGGATTCAATTTCCACGATGAAAATTTCATGCATGGCAAATGATGGGTATTATGTGAACATGGATTTTAATGACGGTGGACAAGTTAAAGAAAACTTAGATGAAATCCAAAATATAACTGTCGAAGTCACATGTGACAGTCGTACTATGGAGT</canonical_amplicon>
		<polymorphic_amplicon>GATGTGACTAATTTTGGGTATCACCTGTTAACCATCAACTTTTTCAAACAATTCTCTTCAGTTTAACTTCAACTCAAATTGCTGGAACTCAGGATTCAATTTCCACGATGAAAATTTCATGCATGGCAAWTGATGGGTATTATGTGAACATGGATTTTAATGACGGTGGACAAGTTAAAGAAAACTTAGATGAAATCCAAAATATAACTGTCGAAGTCACATGTGACAGTCGTACTATGGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb450</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>234223</contig_pos>
        <strand>+</strand>
        <context>TAGAAAGCTT[A/G]AAGAGCTTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGCAAGAATGGGAGGATTTTCTTCAGCCAAAATTCTGGCTAGAAAGCTT</left_flank>
        <right_flank>AAGAGCTTGGTAAAACATGAAATTTCGCAAAGACCCTATTTATGTGCTGC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTGCTCATCCAACCATAGATTGTCAATCAGAAGCTGAATTTCCATTCTTATCAAATTCAGAAGGCGACGTTCCTGACAAAGAGAAACCAGCTGCTTCGGTAACAAAAAATGCGACACTTTTTCGGCGGTACGCACACTTTTTTCTGCTTTTTTTGTGATGCTAAAATATTCACTGGGCCAATTTATGCTCAAGAACTGTGGATACAACCGAATTATTGCTCTGGACATCGAAATCACTTGCAAGAAAAAACAAATTCGGAGCCTTAGCCAATATTCATGCCAAAGACACTCAGAAGCAGAGTTGCAAGGACAATTTCTAAAGATTAATCTCGGCTCCAGTAAAGGCGGCTTTGATTTGAACCCATTTGACTATACCATTTGGGGATACTTGTCCCAGAAGATCTGCACAGAAACCTACCCAAGTTTTTAAGCTTTGAAGGTTGCCTAGAGCAAGAATGGGAGGATTTTCTTCAGCCAAAATTCTGGCTAGAAAGCTTAAAGAGCTTGGTAAAACATGAAATTTCGCAAAGACCCTATTTATGTGCTGCGTACAAAACATCAAGCAGATATCTTCCAAACTAAAATTTAGAGTAAATGTGTTGTTATTTTTTTCATAAATCTCGTAGAGCTTAGCCGCAGGCCCGACTGTTATTCTCTTAATAGTACTGTTTTATGAAGCGCAAACATTTTCCGTAAAAGTCTGAATTTCATCGAATCCCGTCGAGACTACAAACATTCACATTGGCATATAGCCTACCCGACAATTGGCAGCCACTCATGTTCGGGCTAATGAGAACGAATTCGAACCTTTTTCCCTCCTCCCGGAACGTTCTATTTTCATACAAGATCTCCATCGTAACGATCTCATTTGATCCTCCTTCATCCATTCTCTTTCCTCTCTTCGAACTAAATGATCTTACGGGGAACTTTATCAAAAAGATAAAGGATCGCTGGCAAGTATGACAGTATATGCGAATTCGTGTTTTTTGCTTTCCCTC</canonical>
            <polymorphic>ATCTGCTCATCCAACCATAGATTGTCAATCAGAAGCTGAATTTCCATTCTTATCAAATTCAGAAGGCGACGTTCCTGACAAAGAGAAACCAGCTGCTTCGGTAACAAAAAATGCGACACTTTTTCGGCGGTACGCACACTTTTTTCTGCTTTTTTTGTGATGCTAAAATATTCACTGGGCCAATTTATGCTCAAGAACTGTGGATACAACCGAATTATTGCTCTGGACATCGAAATCACTTGCAAGAAAAAACAAATTCGGAGCCTTAGCCAATATTCATGCCAAAGACACTCAGAAGCAGAGTTGCAAGGACAATTTCTAAAGATTAATCTCGGCTCCAGTAAAGGCGGCTTTGATTTGAACCCATTTGACTATACCATTTGGGGATACTTGTCCCAGAAGATCTGCACAGAAACCTACCCAAGTTTTTAAGCTTTGAAGGTTGCCTAGAGCAAGAATGGGAGGATTTTCTTCAGCCAAAATTCTGGCTAGAAAGCTTRAAGAGCTTGGTAAAACATGAAATTTCGCAAAGACCCTATTTATGTGCTGCGTACAAAACATCAAGCAGATATCTTCCAAACTAAAATTTAGAGTAAATGTGTTGTTATTTTTTTCATAAATCTCGTAGAGCTTAGCCGCAGGCCCGACTGTTATTCTCTTAATAGTACTGTTTTATGAAGCGCAAACATTTTCCGTAAAAGTCTGAATTTCATCGAATCCCGTCGAGACTACAAACATTCACATTGGCATATAGCCTACCCGACAATTGGCAGCCACTCATGTTCGGGCTAATGAGAACGAATTCGAACCTTTTTCCCTCCTCCCGGAACGTTCTATTTTCATACAAGATCTCCATCGTAACGATCTCATTTGATCCTCCTTCATCCATTCTCTTTCCTCTCTTCGAACTAAATGATCTTACGGGGAACTTTATCAAAAAGATAAAGGATCGCTGGCAAGTATGACAGTATATGCGAATTCGTGTTTTTTGCTTTCCCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>341 326 161 103 69</canonical_bands>
                <polymorphic_bands>341 326 230 103</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACAAATTCGGAGCCTTAG</pcr_primer_p1>
		<pcr_primer_p2>TTTGTACGCAGCACATAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>308</pcr_amplicon_size>
		<canonical_amplicon>AAACAAATTCGGAGCCTTAGCCAATATTCATGCCAAAGACACTCAGAAGCAGAGTTGCAAGGACAATTTCTAAAGATTAATCTCGGCTCCAGTAAAGGCGGCTTTGATTTGAACCCATTTGACTATACCATTTGGGGATACTTGTCCCAGAAGATCTGCACAGAAACCTACCCAAGTTTTTAAGCTTTGAAGGTTGCCTAGAGCAAGAATGGGAGGATTTTCTTCAGCCAAAATTCTGGCTAGAAAGCTTAAAGAGCTTGGTAAAACATGAAATTTCGCAAAGACCCTATTTATGTGCTGCGTACAAA</canonical_amplicon>
		<polymorphic_amplicon>AAACAAATTCGGAGCCTTAGCCAATATTCATGCCAAAGACACTCAGAAGCAGAGTTGCAAGGACAATTTCTAAAGATTAATCTCGGCTCCAGTAAAGGCGGCTTTGATTTGAACCCATTTGACTATACCATTTGGGGATACTTGTCCCAGAAGATCTGCACAGAAACCTACCCAAGTTTTTAAGCTTTGAAGGTTGCCTAGAGCAAGAATGGGAGGATTTTCTTCAGCCAAAATTCTGGCTAGAAAGCTTRAAGAGCTTGGTAAAACATGAAATTTCGCAAAGACCCTATTTATGTGCTGCGTACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb451</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>234203</contig_pos>
        <strand></strand>
        <context>tcttcagcca[A/T]aaTTCTGGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAGCTTTGAAGGTTGCCTAGAGCAAGAATGGGAGGATTTTCTTCAGCCA</left_flank>
        <right_flank>AATTCTGGCTAGAAAGCTTAAAGAGCTTGGTAAAACATGAAATTTCGCAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTTCATATGACTTACCAATATCTGCTCATCCAACCATAGATTGTCAATCAGAAGCTGAATTTCCATTCTTATCAAATTCAGAAGGCGACGTTCCTGACAAAGAGAAACCAGCTGCTTCGGTAACAAAAAATGCGACACTTTTTCGGCGGTACGCACACTTTTTTCTGCTTTTTTTGTGATGCTAAAATATTCACTGGGCCAATTTATGCTCAAGAACTGTGGATACAACCGAATTATTGCTCTGGACATCGAAATCACTTGCAAGAAAAAACAAATTCGGAGCCTTAGCCAATATTCATGCCAAAGACACTCAGAAGCAGAGTTGCAAGGACAATTTCTAAAGATTAATCTCGGCTCCAGTAAAGGCGGCTTTGATTTGAACCCATTTGACTATACCATTTGGGGATACTTGTCCCAGAAGATCTGCACAGAAACCTACCCAAGTTTTTAAGCTTTGAAGGTTGCCTAGAGCAAGAATGGGAGGATTTTCTTCAGCCAAAATTCTGGCTAGAAAGCTTAAAGAGCTTGGTAAAACATGAAATTTCGCAAAGACCCTATTTATGTGCTGCGTACAAAACATCAAGCAGATATCTTCCAAACTAAAATTTAGAGTAAATGTGTTGTTATTTTTTTCATAAATCTCGTAGAGCTTAGCCGCAGGCCCGACTGTTATTCTCTTAATAGTACTGTTTTATGAAGCGCAAACATTTTCCGTAAAAGTCTGAATTTCATCGAATCCCGTCGAGACTACAAACATTCACATTGGCATATAGCCTACCCGACAATTGGCAGCCACTCATGTTCGGGCTAATGAGAACGAATTCGAACCTTTTTCCCTCCTCCCGGAACGTTCTATTTTCATACAAGATCTCCATCGTAACGATCTCATTTGATCCTCCTTCATCCATTCTCTTTCCTCTCTTCGAACTAAATGATCTTACGGGGAACTTTATCAAAAAGATAAAGGATCGCTGGCAAGTATGACAGTATATGCGAATT</canonical>
            <polymorphic>GCTTCATATGACTTACCAATATCTGCTCATCCAACCATAGATTGTCAATCAGAAGCTGAATTTCCATTCTTATCAAATTCAGAAGGCGACGTTCCTGACAAAGAGAAACCAGCTGCTTCGGTAACAAAAAATGCGACACTTTTTCGGCGGTACGCACACTTTTTTCTGCTTTTTTTGTGATGCTAAAATATTCACTGGGCCAATTTATGCTCAAGAACTGTGGATACAACCGAATTATTGCTCTGGACATCGAAATCACTTGCAAGAAAAAACAAATTCGGAGCCTTAGCCAATATTCATGCCAAAGACACTCAGAAGCAGAGTTGCAAGGACAATTTCTAAAGATTAATCTCGGCTCCAGTAAAGGCGGCTTTGATTTGAACCCATTTGACTATACCATTTGGGGATACTTGTCCCAGAAGATCTGCACAGAAACCTACCCAAGTTTTTAAGCTTTGAAGGTTGCCTAGAGCAAGAATGGGAGGATTTTCTTCAGCCAWAATTCTGGCTAGAAAGCTTAAAGAGCTTGGTAAAACATGAAATTTCGCAAAGACCCTATTTATGTGCTGCGTACAAAACATCAAGCAGATATCTTCCAAACTAAAATTTAGAGTAAATGTGTTGTTATTTTTTTCATAAATCTCGTAGAGCTTAGCCGCAGGCCCGACTGTTATTCTCTTAATAGTACTGTTTTATGAAGCGCAAACATTTTCCGTAAAAGTCTGAATTTCATCGAATCCCGTCGAGACTACAAACATTCACATTGGCATATAGCCTACCCGACAATTGGCAGCCACTCATGTTCGGGCTAATGAGAACGAATTCGAACCTTTTTCCCTCCTCCCGGAACGTTCTATTTTCATACAAGATCTCCATCGTAACGATCTCATTTGATCCTCCTTCATCCATTCTCTTTCCTCTCTTCGAACTAAATGATCTTACGGGGAACTTTATCAAAAAGATAAAGGATCGCTGGCAAGTATGACAGTATATGCGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>226 199 180 121 95 64 58 40 17</canonical_bands>
                <polymorphic_bands>266 199 180 121 95 64 58 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACAAATTCGGAGCCTTAG</pcr_primer_p1>
		<pcr_primer_p2>TTTGCGAAATTTCATGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>282</pcr_amplicon_size>
		<canonical_amplicon>AAACAAATTCGGAGCCTTAGCCAATATTCATGCCAAAGACACTCAGAAGCAGAGTTGCAAGGACAATTTCTAAAGATTAATCTCGGCTCCAGTAAAGGCGGCTTTGATTTGAACCCATTTGACTATACCATTTGGGGATACTTGTCCCAGAAGATCTGCACAGAAACCTACCCAAGTTTTTAAGCTTTGAAGGTTGCCTAGAGCAAGAATGGGAGGATTTTCTTCAGCCAAAATTCTGGCTAGAAAGCTTAAAGAGCTTGGTAAAACATGAAATTTCGCAAA</canonical_amplicon>
		<polymorphic_amplicon>AAACAAATTCGGAGCCTTAGCCAATATTCATGCCAAAGACACTCAGAAGCAGAGTTGCAAGGACAATTTCTAAAGATTAATCTCGGCTCCAGTAAAGGCGGCTTTGATTTGAACCCATTTGACTATACCATTTGGGGATACTTGTCCCAGAAGATCTGCACAGAAACCTACCCAAGTTTTTAAGCTTTGAAGGTTGCCTAGAGCAAGAATGGGAGGATTTTCTTCAGCCAWAATTCTGGCTAGAAAGCTTAAAGAGCTTGGTAAAACATGAAATTTCGCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb452</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>234190</contig_pos>
        <strand></strand>
        <context>aatgggagga[T/C]tttcttcagc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTACCCAAGTTTTTAAGCTTTGAAGGTTGCCTAGAGCAAGAATGGGAGGA</left_flank>
        <right_flank>TTTCTTCAGCCAAAATTCTGGCTAGAAAGCTTAAAGAGCTTGGTAAAACA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGAGACCTGTAGCTTCATATGACTTACCAATATCTGCTCATCCAACCATAGATTGTCAATCAGAAGCTGAATTTCCATTCTTATCAAATTCAGAAGGCGACGTTCCTGACAAAGAGAAACCAGCTGCTTCGGTAACAAAAAATGCGACACTTTTTCGGCGGTACGCACACTTTTTTCTGCTTTTTTTGTGATGCTAAAATATTCACTGGGCCAATTTATGCTCAAGAACTGTGGATACAACCGAATTATTGCTCTGGACATCGAAATCACTTGCAAGAAAAAACAAATTCGGAGCCTTAGCCAATATTCATGCCAAAGACACTCAGAAGCAGAGTTGCAAGGACAATTTCTAAAGATTAATCTCGGCTCCAGTAAAGGCGGCTTTGATTTGAACCCATTTGACTATACCATTTGGGGATACTTGTCCCAGAAGATCTGCACAGAAACCTACCCAAGTTTTTAAGCTTTGAAGGTTGCCTAGAGCAAGAATGGGAGGATTTTCTTCAGCCAAAATTCTGGCTAGAAAGCTTAAAGAGCTTGGTAAAACATGAAATTTCGCAAAGACCCTATTTATGTGCTGCGTACAAAACATCAAGCAGATATCTTCCAAACTAAAATTTAGAGTAAATGTGTTGTTATTTTTTTCATAAATCTCGTAGAGCTTAGCCGCAGGCCCGACTGTTATTCTCTTAATAGTACTGTTTTATGAAGCGCAAACATTTTCCGTAAAAGTCTGAATTTCATCGAATCCCGTCGAGACTACAAACATTCACATTGGCATATAGCCTACCCGACAATTGGCAGCCACTCATGTTCGGGCTAATGAGAACGAATTCGAACCTTTTTCCCTCCTCCCGGAACGTTCTATTTTCATACAAGATCTCCATCGTAACGATCTCATTTGATCCTCCTTCATCCATTCTCTTTCCTCTCTTCGAACTAAATGATCTTACGGGGAACTTTATCAAAAAGATAAAGGATCGCTGGCAAGTATGACA</canonical>
            <polymorphic>CCAGAGACCTGTAGCTTCATATGACTTACCAATATCTGCTCATCCAACCATAGATTGTCAATCAGAAGCTGAATTTCCATTCTTATCAAATTCAGAAGGCGACGTTCCTGACAAAGAGAAACCAGCTGCTTCGGTAACAAAAAATGCGACACTTTTTCGGCGGTACGCACACTTTTTTCTGCTTTTTTTGTGATGCTAAAATATTCACTGGGCCAATTTATGCTCAAGAACTGTGGATACAACCGAATTATTGCTCTGGACATCGAAATCACTTGCAAGAAAAAACAAATTCGGAGCCTTAGCCAATATTCATGCCAAAGACACTCAGAAGCAGAGTTGCAAGGACAATTTCTAAAGATTAATCTCGGCTCCAGTAAAGGCGGCTTTGATTTGAACCCATTTGACTATACCATTTGGGGATACTTGTCCCAGAAGATCTGCACAGAAACCTACCCAAGTTTTTAAGCTTTGAAGGTTGCCTAGAGCAAGAATGGGAGGAYTTTCTTCAGCCAAAATTCTGGCTAGAAAGCTTAAAGAGCTTGGTAAAACATGAAATTTCGCAAAGACCCTATTTATGTGCTGCGTACAAAACATCAAGCAGATATCTTCCAAACTAAAATTTAGAGTAAATGTGTTGTTATTTTTTTCATAAATCTCGTAGAGCTTAGCCGCAGGCCCGACTGTTATTCTCTTAATAGTACTGTTTTATGAAGCGCAAACATTTTCCGTAAAAGTCTGAATTTCATCGAATCCCGTCGAGACTACAAACATTCACATTGGCATATAGCCTACCCGACAATTGGCAGCCACTCATGTTCGGGCTAATGAGAACGAATTCGAACCTTTTTCCCTCCTCCCGGAACGTTCTATTTTCATACAAGATCTCCATCGTAACGATCTCATTTGATCCTCCTTCATCCATTCTCTTTCCTCTCTTCGAACTAAATGATCTTACGGGGAACTTTATCAAAAAGATAAAGGATCGCTGGCAAGTATGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACAAATTCGGAGCCTTAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTCATGTTTTACCAAGCTCT</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>AAACAAATTCGGAGCCTTAGCCAATATTCATGCCAAAGACACTCAGAAGCAGAGTTGCAAGGACAATTTCTAAAGATTAATCTCGGCTCCAGTAAAGGCGGCTTTGATTTGAACCCATTTGACTATACCATTTGGGGATACTTGTCCCAGAAGATCTGCACAGAAACCTACCCAAGTTTTTAAGCTTTGAAGGTTGCCTAGAGCAAGAATGGGAGGATTTTCTTCAGCCAAAATTCTGGCTAGAAAGCTTAAAGAGCTTGGTAAAACATGAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAACAAATTCGGAGCCTTAGCCAATATTCATGCCAAAGACACTCAGAAGCAGAGTTGCAAGGACAATTTCTAAAGATTAATCTCGGCTCCAGTAAAGGCGGCTTTGATTTGAACCCATTTGACTATACCATTTGGGGATACTTGTCCCAGAAGATCTGCACAGAAACCTACCCAAGTTTTTAAGCTTTGAAGGTTGCCTAGAGCAAGAATGGGAGGAYTTTCTTCAGCCAAAATTCTGGCTAGAAAGCTTAAAGAGCTTGGTAAAACATGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb453</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>234117</contig_pos>
        <strand></strand>
        <context>gggatacttg[T/A]cccagaagat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAGGCGGCTTTGATTTGAACCCATTTGACTATACCATTTGGGGATACTTG</left_flank>
        <right_flank>CCCAGAAGATCTGCACAGAAACCTACCCAAGTTTTTAAGCTTTGAAGGTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGTAAATAAAATTCAAAGTCGGACATCGTCGAAAAGCTCAAATTGTTTGTTCACAGAACTGCTGTACGTTACCAGAGACCTGTAGCTTCATATGACTTACCAATATCTGCTCATCCAACCATAGATTGTCAATCAGAAGCTGAATTTCCATTCTTATCAAATTCAGAAGGCGACGTTCCTGACAAAGAGAAACCAGCTGCTTCGGTAACAAAAAATGCGACACTTTTTCGGCGGTACGCACACTTTTTTCTGCTTTTTTTGTGATGCTAAAATATTCACTGGGCCAATTTATGCTCAAGAACTGTGGATACAACCGAATTATTGCTCTGGACATCGAAATCACTTGCAAGAAAAAACAAATTCGGAGCCTTAGCCAATATTCATGCCAAAGACACTCAGAAGCAGAGTTGCAAGGACAATTTCTAAAGATTAATCTCGGCTCCAGTAAAGGCGGCTTTGATTTGAACCCATTTGACTATACCATTTGGGGATACTTGTCCCAGAAGATCTGCACAGAAACCTACCCAAGTTTTTAAGCTTTGAAGGTTGCCTAGAGCAAGAATGGGAGGATTTTCTTCAGCCAAAATTCTGGCTAGAAAGCTTAAAGAGCTTGGTAAAACATGAAATTTCGCAAAGACCCTATTTATGTGCTGCGTACAAAACATCAAGCAGATATCTTCCAAACTAAAATTTAGAGTAAATGTGTTGTTATTTTTTTCATAAATCTCGTAGAGCTTAGCCGCAGGCCCGACTGTTATTCTCTTAATAGTACTGTTTTATGAAGCGCAAACATTTTCCGTAAAAGTCTGAATTTCATCGAATCCCGTCGAGACTACAAACATTCACATTGGCATATAGCCTACCCGACAATTGGCAGCCACTCATGTTCGGGCTAATGAGAACGAATTCGAACCTTTTTCCCTCCTCCCGGAACGTTCTATTTTCATACAAGATCTCCATCGTAACGATCTCATTTGATCCTCCTTCATCCATTCTCT</canonical>
            <polymorphic>TTCGTAAATAAAATTCAAAGTCGGACATCGTCGAAAAGCTCAAATTGTTTGTTCACAGAACTGCTGTACGTTACCAGAGACCTGTAGCTTCATATGACTTACCAATATCTGCTCATCCAACCATAGATTGTCAATCAGAAGCTGAATTTCCATTCTTATCAAATTCAGAAGGCGACGTTCCTGACAAAGAGAAACCAGCTGCTTCGGTAACAAAAAATGCGACACTTTTTCGGCGGTACGCACACTTTTTTCTGCTTTTTTTGTGATGCTAAAATATTCACTGGGCCAATTTATGCTCAAGAACTGTGGATACAACCGAATTATTGCTCTGGACATCGAAATCACTTGCAAGAAAAAACAAATTCGGAGCCTTAGCCAATATTCATGCCAAAGACACTCAGAAGCAGAGTTGCAAGGACAATTTCTAAAGATTAATCTCGGCTCCAGTAAAGGCGGCTTTGATTTGAACCCATTTGACTATACCATTTGGGGATACTTGWCCCAGAAGATCTGCACAGAAACCTACCCAAGTTTTTAAGCTTTGAAGGTTGCCTAGAGCAAGAATGGGAGGATTTTCTTCAGCCAAAATTCTGGCTAGAAAGCTTAAAGAGCTTGGTAAAACATGAAATTTCGCAAAGACCCTATTTATGTGCTGCGTACAAAACATCAAGCAGATATCTTCCAAACTAAAATTTAGAGTAAATGTGTTGTTATTTTTTTCATAAATCTCGTAGAGCTTAGCCGCAGGCCCGACTGTTATTCTCTTAATAGTACTGTTTTATGAAGCGCAAACATTTTCCGTAAAAGTCTGAATTTCATCGAATCCCGTCGAGACTACAAACATTCACATTGGCATATAGCCTACCCGACAATTGGCAGCCACTCATGTTCGGGCTAATGAGAACGAATTCGAACCTTTTTCCCTCCTCCCGGAACGTTCTATTTTCATACAAGATCTCCATCGTAACGATCTCATTTGATCCTCCTTCATCCATTCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACAAATTCGGAGCCTTAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTCATGTTTTACCAAGCTCT</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>AAACAAATTCGGAGCCTTAGCCAATATTCATGCCAAAGACACTCAGAAGCAGAGTTGCAAGGACAATTTCTAAAGATTAATCTCGGCTCCAGTAAAGGCGGCTTTGATTTGAACCCATTTGACTATACCATTTGGGGATACTTGTCCCAGAAGATCTGCACAGAAACCTACCCAAGTTTTTAAGCTTTGAAGGTTGCCTAGAGCAAGAATGGGAGGATTTTCTTCAGCCAAAATTCTGGCTAGAAAGCTTAAAGAGCTTGGTAAAACATGAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAACAAATTCGGAGCCTTAGCCAATATTCATGCCAAAGACACTCAGAAGCAGAGTTGCAAGGACAATTTCTAAAGATTAATCTCGGCTCCAGTAAAGGCGGCTTTGATTTGAACCCATTTGACTATACCATTTGGGGATACTTGWCCCAGAAGATCTGCACAGAAACCTACCCAAGTTTTTAAGCTTTGAAGGTTGCCTAGAGCAAGAATGGGAGGATTTTCTTCAGCCAAAATTCTGGCTAGAAAGCTTAAAGAGCTTGGTAAAACATGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb454</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>234540</contig_pos>
        <strand>+</strand>
        <context>AACCTTTTTC[C/T]CTCCTCCCGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGCAGCCACTCATGTTCGGGCTAATGAGAACGAATTCGAACCTTTTTC</left_flank>
        <right_flank>CTCCTCCCGGAACGTTCTATTTTCATACAAGATCTCCATCGTAACGATCT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTAAAGATTAATCTCGGCTCCAGTAAAGGCGGCTTTGATTTGAACCCATTTGACTATACCATTTGGGGATACTTGTCCCAGAAGATCTGCACAGAAACCTACCCAAGTTTTTAAGCTTTGAAGGTTGCCTAGAGCAAGAATGGGAGGATTTTCTTCAGCCAAAATTCTGGCTAGAAAGCTTAAAGAGCTTGGTAAAACATGAAATTTCGCAAAGACCCTATTTATGTGCTGCGTACAAAACATCAAGCAGATATCTTCCAAACTAAAATTTAGAGTAAATGTGTTGTTATTTTTTTCATAAATCTCGTAGAGCTTAGCCGCAGGCCCGACTGTTATTCTCTTAATAGTACTGTTTTATGAAGCGCAAACATTTTCCGTAAAAGTCTGAATTTCATCGAATCCCGTCGAGACTACAAACATTCACATTGGCATATAGCCTACCCGACAATTGGCAGCCACTCATGTTCGGGCTAATGAGAACGAATTCGAACCTTTTTCCCTCCTCCCGGAACGTTCTATTTTCATACAAGATCTCCATCGTAACGATCTCATTTGATCCTCCTTCATCCATTCTCTTTCCTCTCTTCGAACTAAATGATCTTACGGGGAACTTTATCAAAAAGATAAAGGATCGCTGGCAAGTATGACAGTATATGCGAATTCGTGTTTTTTGCTTTCCCTCCCGTTTCTGTCGCTCTCTTCTTGATCTCTCCACCTCTTGATGTTATATAAAAGTGTGAGTCCATGAGGACGAATGTCCTACTTCCCCAGTGATTGTGTCAAGATATGTCCGAAATTTCTTCTTGCAATCCTTTTTATTTCTGGATTGTTTCATTTTGGAGATGTATGCTTAGCTACATCACCTGGTGGTAGTCCGACAGTTCCTAGTTCTACAGTTATACCGCCAACCCGTTCTACTACTGAAACGCCAACCAGTTCTATTAGGTTGGCGGGAAAGTCTTTGTCACTTTTTCAATAGTTTATTTCTCAAAGAAAAAA</canonical>
            <polymorphic>TCTAAAGATTAATCTCGGCTCCAGTAAAGGCGGCTTTGATTTGAACCCATTTGACTATACCATTTGGGGATACTTGTCCCAGAAGATCTGCACAGAAACCTACCCAAGTTTTTAAGCTTTGAAGGTTGCCTAGAGCAAGAATGGGAGGATTTTCTTCAGCCAAAATTCTGGCTAGAAAGCTTAAAGAGCTTGGTAAAACATGAAATTTCGCAAAGACCCTATTTATGTGCTGCGTACAAAACATCAAGCAGATATCTTCCAAACTAAAATTTAGAGTAAATGTGTTGTTATTTTTTTCATAAATCTCGTAGAGCTTAGCCGCAGGCCCGACTGTTATTCTCTTAATAGTACTGTTTTATGAAGCGCAAACATTTTCCGTAAAAGTCTGAATTTCATCGAATCCCGTCGAGACTACAAACATTCACATTGGCATATAGCCTACCCGACAATTGGCAGCCACTCATGTTCGGGCTAATGAGAACGAATTCGAACCTTTTTCYCTCCTCCCGGAACGTTCTATTTTCATACAAGATCTCCATCGTAACGATCTCATTTGATCCTCCTTCATCCATTCTCTTTCCTCTCTTCGAACTAAATGATCTTACGGGGAACTTTATCAAAAAGATAAAGGATCGCTGGCAAGTATGACAGTATATGCGAATTCGTGTTTTTTGCTTTCCCTCCCGTTTCTGTCGCTCTCTTCTTGATCTCTCCACCTCTTGATGTTATATAAAAGTGTGAGTCCATGAGGACGAATGTCCTACTTCCCCAGTGATTGTGTCAAGATATGTCCGAAATTTCTTCTTGCAATCCTTTTTATTTCTGGATTGTTTCATTTTGGAGATGTATGCTTAGCTACATCACCTGGTGGTAGTCCGACAGTTCCTAGTTCTACAGTTATACCGCCAACCCGTTCTACTACTGAAACGCCAACCAGTTCTATTAGGTTGGCGGGAAAGTCTTTGTCACTTTTTCAATAGTTTATTTCTCAAAGAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>494 449 57</canonical_bands>
                <polymorphic_bands>551 449</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATTTTCCGTAAAAGTCTGAAT</pcr_primer_p1>
		<pcr_primer_p2>ATAAAGTTCCCCGTAAGATCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACATTTTCCGTAAAAGTCTGAATTTCATCGAATCCCGTCGAGACTACAAACATTCACATTGGCATATAGCCTACCCGACAATTGGCAGCCACTCATGTTCGGGCTAATGAGAACGAATTCGAACCTTTTTCCCTCCTCCCGGAACGTTCTATTTTCATACAAGATCTCCATCGTAACGATCTCATTTGATCCTCCTTCATCCATTCTCTTTCCTCTCTTCGAACTAAATGATCTTACGGGGAACTTTAT</canonical_amplicon>
		<polymorphic_amplicon>ACATTTTCCGTAAAAGTCTGAATTTCATCGAATCCCGTCGAGACTACAAACATTCACATTGGCATATAGCCTACCCGACAATTGGCAGCCACTCATGTTCGGGCTAATGAGAACGAATTCGAACCTTTTTCYCTCCTCCCGGAACGTTCTATTTTCATACAAGATCTCCATCGTAACGATCTCATTTGATCCTCCTTCATCCATTCTCTTTCCTCTCTTCGAACTAAATGATCTTACGGGGAACTTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb455</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>234394</contig_pos>
        <strand>+</strand>
        <context>AATAGTACTG[C/T]TTTATGAAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCGTAGAGCTTAGCCGCAGGCCCGACTGTTATTCTCTTAATAGTACTG</left_flank>
        <right_flank>TTTATGAAGCGCAAACATTTTCCGTAAAAGTCTGAATTTCATCGAATCCC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACTGGGCCAATTTATGCTCAAGAACTGTGGATACAACCGAATTATTGCTCTGGACATCGAAATCACTTGCAAGAAAAAACAAATTCGGAGCCTTAGCCAATATTCATGCCAAAGACACTCAGAAGCAGAGTTGCAAGGACAATTTCTAAAGATTAATCTCGGCTCCAGTAAAGGCGGCTTTGATTTGAACCCATTTGACTATACCATTTGGGGATACTTGTCCCAGAAGATCTGCACAGAAACCTACCCAAGTTTTTAAGCTTTGAAGGTTGCCTAGAGCAAGAATGGGAGGATTTTCTTCAGCCAAAATTCTGGCTAGAAAGCTTAAAGAGCTTGGTAAAACATGAAATTTCGCAAAGACCCTATTTATGTGCTGCGTACAAAACATCAAGCAGATATCTTCCAAACTAAAATTTAGAGTAAATGTGTTGTTATTTTTTTCATAAATCTCGTAGAGCTTAGCCGCAGGCCCGACTGTTATTCTCTTAATAGTACTGTTTTATGAAGCGCAAACATTTTCCGTAAAAGTCTGAATTTCATCGAATCCCGTCGAGACTACAAACATTCACATTGGCATATAGCCTACCCGACAATTGGCAGCCACTCATGTTCGGGCTAATGAGAACGAATTCGAACCTTTTTCCCTCCTCCCGGAACGTTCTATTTTCATACAAGATCTCCATCGTAACGATCTCATTTGATCCTCCTTCATCCATTCTCTTTCCTCTCTTCGAACTAAATGATCTTACGGGGAACTTTATCAAAAAGATAAAGGATCGCTGGCAAGTATGACAGTATATGCGAATTCGTGTTTTTTGCTTTCCCTCCCGTTTCTGTCGCTCTCTTCTTGATCTCTCCACCTCTTGATGTTATATAAAAGTGTGAGTCCATGAGGACGAATGTCCTACTTCCCCAGTGATTGTGTCAAGATATGTCCGAAATTTCTTCTTGCAATCCTTTTTATTTCTGGATTGTTTCATTTTGGAGATGTATGCTTA</canonical>
            <polymorphic>TCACTGGGCCAATTTATGCTCAAGAACTGTGGATACAACCGAATTATTGCTCTGGACATCGAAATCACTTGCAAGAAAAAACAAATTCGGAGCCTTAGCCAATATTCATGCCAAAGACACTCAGAAGCAGAGTTGCAAGGACAATTTCTAAAGATTAATCTCGGCTCCAGTAAAGGCGGCTTTGATTTGAACCCATTTGACTATACCATTTGGGGATACTTGTCCCAGAAGATCTGCACAGAAACCTACCCAAGTTTTTAAGCTTTGAAGGTTGCCTAGAGCAAGAATGGGAGGATTTTCTTCAGCCAAAATTCTGGCTAGAAAGCTTAAAGAGCTTGGTAAAACATGAAATTTCGCAAAGACCCTATTTATGTGCTGCGTACAAAACATCAAGCAGATATCTTCCAAACTAAAATTTAGAGTAAATGTGTTGTTATTTTTTTCATAAATCTCGTAGAGCTTAGCCGCAGGCCCGACTGTTATTCTCTTAATAGTACTGYTTTATGAAGCGCAAACATTTTCCGTAAAAGTCTGAATTTCATCGAATCCCGTCGAGACTACAAACATTCACATTGGCATATAGCCTACCCGACAATTGGCAGCCACTCATGTTCGGGCTAATGAGAACGAATTCGAACCTTTTTCCCTCCTCCCGGAACGTTCTATTTTCATACAAGATCTCCATCGTAACGATCTCATTTGATCCTCCTTCATCCATTCTCTTTCCTCTCTTCGAACTAAATGATCTTACGGGGAACTTTATCAAAAAGATAAAGGATCGCTGGCAAGTATGACAGTATATGCGAATTCGTGTTTTTTGCTTTCCCTCCCGTTTCTGTCGCTCTCTTCTTGATCTCTCCACCTCTTGATGTTATATAAAAGTGTGAGTCCATGAGGACGAATGTCCTACTTCCCCAGTGATTGTGTCAAGATATGTCCGAAATTTCTTCTTGCAATCCTTTTTATTTCTGGATTGTTTCATTTTGGAGATGTATGCTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>450 298 204 28 20</canonical_bands>
                <polymorphic_bands>450 318 204 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAGCTTGGTAAAACATGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCAATGTGAATGTTTGTAGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAGAGCTTGGTAAAACATGAAATTTCGCAAAGACCCTATTTATGTGCTGCGTACAAAACATCAAGCAGATATCTTCCAAACTAAAATTTAGAGTAAATGTGTTGTTATTTTTTTCATAAATCTCGTAGAGCTTAGCCGCAGGCCCGACTGTTATTCTCTTAATAGTACTGTTTTATGAAGCGCAAACATTTTCCGTAAAAGTCTGAATTTCATCGAATCCCGTCGAGACTACAAACATTCACATTGG</canonical_amplicon>
		<polymorphic_amplicon>AAGAGCTTGGTAAAACATGAAATTTCGCAAAGACCCTATTTATGTGCTGCGTACAAAACATCAAGCAGATATCTTCCAAACTAAAATTTAGAGTAAATGTGTTGTTATTTTTTTCATAAATCTCGTAGAGCTTAGCCGCAGGCCCGACTGTTATTCTCTTAATAGTACTGYTTTATGAAGCGCAAACATTTTCCGTAAAAGTCTGAATTTCATCGAATCCCGTCGAGACTACAAACATTCACATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb456</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>247553</contig_pos>
        <strand>+</strand>
        <context>TGACTCGAAT[G/T]AAAAAACCCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGGAGTTGGGTAAGAAATTGGGATAAGTTTTTTTAAACATGACTCGAAT</left_flank>
        <right_flank>AAAAAACCCCGAAAAAATAGAACATTTAAATTCAGAAGAAGGCACGTAGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAATACCGCCTGCTACTCATTAAGATACACTCAAATCGGACCATTATCTCTAAACACGTATTTGAATCAAGCAATGGGATTCGGAATGTATCTTCAAGGTCCTATAACACAAATGATAATCACGATAAACCGCTTCTTGGTGATTTGGTTTACCCCGACCAAAATCCCAGAGTACAGTAATCGGATTACTGTAACGGCTCTCTCTGTATCTTGGGCGATTGCAATTTGGTTGTCAACTTTAATAGGCTTGCCTGGTTGGGATTTCGAATGATTTTTGAGCCTTATCTTCTGGTTTTTAGATAATTGTCGGGTGCCAATGGGATTTGAGCATATAGGATACTACAGTACTCCATGCAACTATCAGATTACTATAATCACCGTTTCTGCTATATTTCTTCTGGCGATTTTCACGAACAGCATGAACCTCATGATTGCTGGTAAACTAATTTGGAGTTGGGTAAGAAATTGGGATAAGTTTTTTTAAACATGACTCGAATGAAAAAACCCCGAAAAAATAGAACATTTAAATTCAGAAGAAGGCACGTAGCAATTTATCATCCGAAGCCAGCCAACAACGGCGAAAAACTTCGGCTCGATTCTTCTTTCAGTCTTGTATTCAAGATTGGATTTGTGTAATGGATGTTGCAAATAATATGGTCTCTCATATTTACTGTTCAAGTGATCGTCTCTGTATTTCACTTGCTTTGATTGCTTTTGGAGTTTTAGTTCCTGGAGTAGATGGGGAAACAAATTGCAGAACTTCTAAAATAGGAAATGTGAAACTACAGATTGGTAATGTATCTCTTCAACTATCGATCTTCTGGAAAACGTATTGTTAGTAGAGATGTGACCACTGAATCTATGAGAACTATAATTCGTGTTTCACCAGTTCCAGTTTCTTAACTTATAACTTAAAATGCCCAAAACAATTTTTTTCCAATGGTATGTTATAAATAAAACGTCTTGTAATCATTTATGTGCTAAAAAGTTTCCCAATA</canonical>
            <polymorphic>TGAAATACCGCCTGCTACTCATTAAGATACACTCAAATCGGACCATTATCTCTAAACACGTATTTGAATCAAGCAATGGGATTCGGAATGTATCTTCAAGGTCCTATAACACAAATGATAATCACGATAAACCGCTTCTTGGTGATTTGGTTTACCCCGACCAAAATCCCAGAGTACAGTAATCGGATTACTGTAACGGCTCTCTCTGTATCTTGGGCGATTGCAATTTGGTTGTCAACTTTAATAGGCTTGCCTGGTTGGGATTTCGAATGATTTTTGAGCCTTATCTTCTGGTTTTTAGATAATTGTCGGGTGCCAATGGGATTTGAGCATATAGGATACTACAGTACTCCATGCAACTATCAGATTACTATAATCACCGTTTCTGCTATATTTCTTCTGGCGATTTTCACGAACAGCATGAACCTCATGATTGCTGGTAAACTAATTTGGAGTTGGGTAAGAAATTGGGATAAGTTTTTTTAAACATGACTCGAATKAAAAAACCCCGAAAAAATAGAACATTTAAATTCAGAAGAAGGCACGTAGCAATTTATCATCCGAAGCCAGCCAACAACGGCGAAAAACTTCGGCTCGATTCTTCTTTCAGTCTTGTATTCAAGATTGGATTTGTGTAATGGATGTTGCAAATAATATGGTCTCTCATATTTACTGTTCAAGTGATCGTCTCTGTATTTCACTTGCTTTGATTGCTTTTGGAGTTTTAGTTCCTGGAGTAGATGGGGAAACAAATTGCAGAACTTCTAAAATAGGAAATGTGAAACTACAGATTGGTAATGTATCTCTTCAACTATCGATCTTCTGGAAAACGTATTGTTAGTAGAGATGTGACCACTGAATCTATGAGAACTATAATTCGTGTTTCACCAGTTCCAGTTTCTTAACTTATAACTTAAAATGCCCAAAACAATTTTTTTCCAATGGTATGTTATAAATAAAACGTCTTGTAATCATTTATGTGCTAAAAAGTTTCCCAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAACTAATTTGGAGTTGGGTAA</pcr_primer_p1>
		<pcr_primer_p2>AGACGATCACTTGAACAGTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAACTAATTTGGAGTTGGGTAAGAAATTGGGATAAGTTTTTTTAAACATGACTCGAATGAAAAAACCCCGAAAAAATAGAACATTTAAATTCAGAAGAAGGCACGTAGCAATTTATCATCCGAAGCCAGCCAACAACGGCGAAAAACTTCGGCTCGATTCTTCTTTCAGTCTTGTATTCAAGATTGGATTTGTGTAATGGATGTTGCAAATAATATGGTCTCTCATATTTACTGTTCAAGTGATCGTCT</canonical_amplicon>
		<polymorphic_amplicon>TAAACTAATTTGGAGTTGGGTAAGAAATTGGGATAAGTTTTTTTAAACATGACTCGAATKAAAAAACCCCGAAAAAATAGAACATTTAAATTCAGAAGAAGGCACGTAGCAATTTATCATCCGAAGCCAGCCAACAACGGCGAAAAACTTCGGCTCGATTCTTCTTTCAGTCTTGTATTCAAGATTGGATTTGTGTAATGGATGTTGCAAATAATATGGTCTCTCATATTTACTGTTCAAGTGATCGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb457</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>247838</contig_pos>
        <strand>+</strand>
        <context>AAATGTGAAA[C/T]TACAGATTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGTAGATGGGGAAACAAATTGCAGAACTTCTAAAATAGGAAATGTGAAA</left_flank>
        <right_flank>TACAGATTGGTAATGTATCTCTTCAACTATCGATCTTCTGGAAAACGTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTTCTGGTTTTTAGATAATTGTCGGGTGCCAATGGGATTTGAGCATATAGGATACTACAGTACTCCATGCAACTATCAGATTACTATAATCACCGTTTCTGCTATATTTCTTCTGGCGATTTTCACGAACAGCATGAACCTCATGATTGCTGGTAAACTAATTTGGAGTTGGGTAAGAAATTGGGATAAGTTTTTTTAAACATGACTCGAATGAAAAAACCCCGAAAAAATAGAACATTTAAATTCAGAAGAAGGCACGTAGCAATTTATCATCCGAAGCCAGCCAACAACGGCGAAAAACTTCGGCTCGATTCTTCTTTCAGTCTTGTATTCAAGATTGGATTTGTGTAATGGATGTTGCAAATAATATGGTCTCTCATATTTACTGTTCAAGTGATCGTCTCTGTATTTCACTTGCTTTGATTGCTTTTGGAGTTTTAGTTCCTGGAGTAGATGGGGAAACAAATTGCAGAACTTCTAAAATAGGAAATGTGAAACTACAGATTGGTAATGTATCTCTTCAACTATCGATCTTCTGGAAAACGTATTGTTAGTAGAGATGTGACCACTGAATCTATGAGAACTATAATTCGTGTTTCACCAGTTCCAGTTTCTTAACTTATAACTTAAAATGCCCAAAACAATTTTTTTCCAATGGTATGTTATAAATAAAACGTCTTGTAATCATTTATGTGCTAAAAAGTTTCCCAATAAACGCCGATGGCCGTGGCCGATTATATTTGGCCGTGGCCGATTATATTTGGCCGTGGCCGATTTATATTTTCCGGATCTATTTTCTCAATTCGGGCTTTTTTTTCAATAAACAATTTTTATTTTCCGACTTGTTTGGGGGTAGAATCGTTTCAAAAACAAGAGTTGACAATTTTCAAAGAATTTTTTTTTGATTTTTTAACTTTGAACTGTCACCATAGTTTTAAGCTGAAAAAATCAAAGTATACCGTATCAGCTGTGTTTTATCAGTTGACACTTTTTTTGAT</canonical>
            <polymorphic>ATCTTCTGGTTTTTAGATAATTGTCGGGTGCCAATGGGATTTGAGCATATAGGATACTACAGTACTCCATGCAACTATCAGATTACTATAATCACCGTTTCTGCTATATTTCTTCTGGCGATTTTCACGAACAGCATGAACCTCATGATTGCTGGTAAACTAATTTGGAGTTGGGTAAGAAATTGGGATAAGTTTTTTTAAACATGACTCGAATGAAAAAACCCCGAAAAAATAGAACATTTAAATTCAGAAGAAGGCACGTAGCAATTTATCATCCGAAGCCAGCCAACAACGGCGAAAAACTTCGGCTCGATTCTTCTTTCAGTCTTGTATTCAAGATTGGATTTGTGTAATGGATGTTGCAAATAATATGGTCTCTCATATTTACTGTTCAAGTGATCGTCTCTGTATTTCACTTGCTTTGATTGCTTTTGGAGTTTTAGTTCCTGGAGTAGATGGGGAAACAAATTGCAGAACTTCTAAAATAGGAAATGTGAAAYTACAGATTGGTAATGTATCTCTTCAACTATCGATCTTCTGGAAAACGTATTGTTAGTAGAGATGTGACCACTGAATCTATGAGAACTATAATTCGTGTTTCACCAGTTCCAGTTTCTTAACTTATAACTTAAAATGCCCAAAACAATTTTTTTCCAATGGTATGTTATAAATAAAACGTCTTGTAATCATTTATGTGCTAAAAAGTTTCCCAATAAACGCCGATGGCCGTGGCCGATTATATTTGGCCGTGGCCGATTATATTTGGCCGTGGCCGATTTATATTTTCCGGATCTATTTTCTCAATTCGGGCTTTTTTTTCAATAAACAATTTTTATTTTCCGACTTGTTTGGGGGTAGAATCGTTTCAAAAACAAGAGTTGACAATTTTCAAAGAATTTTTTTTTGATTTTTTAACTTTGAACTGTCACCATAGTTTTAAGCTGAAAAAATCAAAGTATACCGTATCAGCTGTGTTTTATCAGTTGACACTTTTTTTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 443 57</canonical_bands>
                <polymorphic_bands>943 57</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTGTATTCAAGATTGGATTTGT</pcr_primer_p1>
		<pcr_primer_p2>GATTCAGTGGTCACATCTCTACT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTTGTATTCAAGATTGGATTTGTGTAATGGATGTTGCAAATAATATGGTCTCTCATATTTACTGTTCAAGTGATCGTCTCTGTATTTCACTTGCTTTGATTGCTTTTGGAGTTTTAGTTCCTGGAGTAGATGGGGAAACAAATTGCAGAACTTCTAAAATAGGAAATGTGAAACTACAGATTGGTAATGTATCTCTTCAACTATCGATCTTCTGGAAAACGTATTGTTAGTAGAGATGTGACCACTGAATC</canonical_amplicon>
		<polymorphic_amplicon>CTTGTATTCAAGATTGGATTTGTGTAATGGATGTTGCAAATAATATGGTCTCTCATATTTACTGTTCAAGTGATCGTCTCTGTATTTCACTTGCTTTGATTGCTTTTGGAGTTTTAGTTCCTGGAGTAGATGGGGAAACAAATTGCAGAACTTCTAAAATAGGAAATGTGAAAYTACAGATTGGTAATGTATCTCTTCAACTATCGATCTTCTGGAAAACGTATTGTTAGTAGAGATGTGACCACTGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb458</snp_id>
        <super_contig>c000100830.Contig1</super_contig>
        <contig_pos>18920</contig_pos>
        <strand>+</strand>
        <context>ATTGGATTCC[C/G]TTCCGAGGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAAGAAGGTGCTGATGTGTGGCGATTGTGAGCTTGGACCGATTGGATTCC</left_flank>
        <right_flank>TTCCGAGGACAATAAGAAGTTTTGGGTGGCTGTGGAACGTGTCAAATATG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTCCTGATGTGTGTTTTTTGTGTTTACAAAACGTATGCTTCCATGGAAGGCATTTTAATTTTCATGGTTCTTTCCACAAGCGGTAGTTCTCCCATTCCTTGCGACCTTTTCCCATTCCCAACTTTCAGATGCAAGTACCCCTGAAACTTCAACTATTCGCGATCAAACCGCAGCCAGCGAACACTCCGGTTAATGGTAAATGTGAGAAGGTTAACAAAGACGATTTGATCAATGAGGACGACCGTAACCTGCACAAAATCGTCTGTCGCCGCTGCAAATCCGTCATTTTCCCCGAAGACGTTGTGATGACCGTTGACAACCAGCCGTATCAACTGCGTGTGATGACTCATCAGGGCAAAGGAGCGTCGTCGTTCGAGAAGATCAGTTGGTGGTGGTACACCGAGAGCGATATGGTATTTGATACTGTCGGATGGCAGACAATTGACAAGAAGAAGGTGCTGATGTGTGGCGATTGTGAGCTTGGACCGATTGGATTCCGTTCCGAGGACAATAAGAAGTTTTGGGTGGCTGTGGAACGTGTCAAATATGAGAAATCCTAAACACAGTGTAATGATCTTTGAGTGAAAATGTTCAAATAAACGGTTACCATTCCTCATTTTTCTCACATTTTTTCAATAAAGCTTCTCTATTAATCATCAAAAGTCTTCAACAATAATTCTTCAATTGAAAATAACAAAAAACAAAAATTAACCTAATCTACAGAGAAAAAAAGAAAATGTAAAATCAGAAAAAAAACCTAAAACAATGATCTACTTCTTCTTCTTCTTTCCTTTCTCATTTGGATCTGCGATTCCGTGCAACTGTCTCCACTCAGCTTGTACTCTATCTTGTGCTTCTAACGATGTCGGTGCATATCTCGAATATTCCATACTGAATTCTCCTTTTCCTTCTGTCAATGATCGTAGCTCTGATGTGTATCCGAACATATCGGAAAGTGCGCTTCACAAACCACTGTCGCATATCCTTCTGTGGAATCTG</canonical>
            <polymorphic>CGTCCTGATGTGTGTTTTTTGTGTTTACAAAACGTATGCTTCCATGGAAGGCATTTTAATTTTCATGGTTCTTTCCACAAGCGGTAGTTCTCCCATTCCTTGCGACCTTTTCCCATTCCCAACTTTCAGATGCAAGTACCCCTGAAACTTCAACTATTCGCGATCAAACCGCAGCCAGCGAACACTCCGGTTAATGGTAAATGTGAGAAGGTTAACAAAGACGATTTGATCAATGAGGACGACCGTAACCTGCACAAAATCGTCTGTCGCCGCTGCAAATCCGTCATTTTCCCCGAAGACGTTGTGATGACCGTTGACAACCAGCCGTATCAACTGCGTGTGATGACTCATCAGGGCAAAGGAGCGTCGTCGTTCGAGAAGATCAGTTGGTGGTGGTACACCGAGAGCGATATGGTATTTGATACTGTCGGATGGCAGACAATTGACAAGAAGAAGGTGCTGATGTGTGGCGATTGTGAGCTTGGACCGATTGGATTCCSTTCCGAGGACAATAAGAAGTTTTGGGTGGCTGTGGAACGTGTCAAATATGAGAAATCCTAAACACAGTGTAATGATCTTTGAGTGAAAATGTTCAAATAAACGGTTACCATTCCTCATTTTTCTCACATTTTTTCAATAAAGCTTCTCTATTAATCATCAAAAGTCTTCAACAATAATTCTTCAATTGAAAATAACAAAAAACAAAAATTAACCTAATCTACAGAGAAAAAAAGAAAATGTAAAATCAGAAAAAAAACCTAAAACAATGATCTACTTCTTCTTCTTCTTTCCTTTCTCATTTGGATCTGCGATTCCGTGCAACTGTCTCCACTCAGCTTGTACTCTATCTTGTGCTTCTAACGATGTCGGTGCATATCTCGAATATTCCATACTGAATTCTCCTTTTCCTTCTGTCAATGATCGTAGCTCTGATGTGTATCCGAACATATCGGAAAGTGCGCTTCACAAACCACTGTCGCATATCCTTCTGTGGAATCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGACAATTGACAAGAAGAAGGT</pcr_primer_p1>
		<pcr_primer_p2>TTATTGTTGAAGACTTTTGATGA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>AGACAATTGACAAGAAGAAGGTGCTGATGTGTGGCGATTGTGAGCTTGGACCGATTGGATTCCGTTCCGAGGACAATAAGAAGTTTTGGGTGGCTGTGGAACGTGTCAAATATGAGAAATCCTAAACACAGTGTAATGATCTTTGAGTGAAAATGTTCAAATAAACGGTTACCATTCCTCATTTTTCTCACATTTTTTCAATAAAGCTTCTCTATTAATCATCAAAAGTCTTCAACAATAA</canonical_amplicon>
		<polymorphic_amplicon>AGACAATTGACAAGAAGAAGGTGCTGATGTGTGGCGATTGTGAGCTTGGACCGATTGGATTCCSTTCCGAGGACAATAAGAAGTTTTGGGTGGCTGTGGAACGTGTCAAATATGAGAAATCCTAAACACAGTGTAATGATCTTTGAGTGAAAATGTTCAAATAAACGGTTACCATTCCTCATTTTTCTCACATTTTTTCAATAAAGCTTCTCTATTAATCATCAAAAGTCTTCAACAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb459</snp_id>
        <super_contig>c000100830.Contig1</super_contig>
        <contig_pos>21718</contig_pos>
        <strand>+</strand>
        <context>GATTCATCGG[A/G]ACTTTTGCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAGGACTCATCGTGTATTACCTCAAAAATCAAAAATTAAGATTCATCGG</left_flank>
        <right_flank>ACTTTTGCGAGTGGTAACTTGAAATAATGTTAGAGAACTGTCTCAAGAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAGTATCGATGATATTGATATTAGTTCCGTGCCAATCAACATAAGTAGCTGCCGATTGAATTGTGATTCCTCGTTGTCTTTCCAACTCCATAAAGTCCATTGTCGCTCCGACGTCATCCTTTCCTCGAACCTCGTGCATCGAGTCGATTCTACCCGCGTAGTACAAGATTCTCTCCGTTACTGTTGTTTTTCCAGAATCGATATGAGCAGAGATACCTAGAAGCATTATGTTAACTTTTTATTTATCGGTAAAAACTGCGTACCAATATTTCTAATTCTCTCAATAGGCCGCACGCCTGGAACAATGACTGATGGTGCTTCATTCGATGTGAATCGACGGAAGACATTGTTTAACTGAAAGGAAAACAATGGGTTTTTTGGTTTTATCATCAGGAATGCGTTGAATTTACCTGTCGTCGGCTTTGAGCTACTGCAGAGAACCTCCCAAGAGGACTCATCGTGTATTACCTCAAAAATCAAAAATTAAGATTCATCGGAACTTTTGCGAGTGGTAACTTGAAATAATGTTAGAGAACTGTCTCAAGAATTTTTTCATATTAAAATTACAGAAAAGATTGTAGATTTTGGCCTGAAAAACGAAAAAAGCCTAAAAATGATGCCATACCGAGGGACAGTCCACGAGGACTACACGGAGGGTGGCCGAGGTTGCGCGCCTCTTCCACTGAGCTCGGCCATGTTTACGAGTTTGCAACACAGAATTCAAGAAATTATTTCTCCATGAAGAAGACGTTTTCCGTAGATCTGACAAACACCATCGTGTAGAGCGATTTTTAAACACCTTTTTTCATATTTTCTTTTTTCAATGGCATTAAATTTTGAACTAGATCTACCCTTTCTTCAAATTGACCAATTTAAACTAATAATTCCTCTATCAACAAAAAGGAGTGCACATTGATTTTTTGGAAAATTGGGTCACATATGTTAATGCGCAATGAATAAGGGCGAAGGTTCATAATTTGCCAAGAAAACTAATCGGG</canonical>
            <polymorphic>TGGAGTATCGATGATATTGATATTAGTTCCGTGCCAATCAACATAAGTAGCTGCCGATTGAATTGTGATTCCTCGTTGTCTTTCCAACTCCATAAAGTCCATTGTCGCTCCGACGTCATCCTTTCCTCGAACCTCGTGCATCGAGTCGATTCTACCCGCGTAGTACAAGATTCTCTCCGTTACTGTTGTTTTTCCAGAATCGATATGAGCAGAGATACCTAGAAGCATTATGTTAACTTTTTATTTATCGGTAAAAACTGCGTACCAATATTTCTAATTCTCTCAATAGGCCGCACGCCTGGAACAATGACTGATGGTGCTTCATTCGATGTGAATCGACGGAAGACATTGTTTAACTGAAAGGAAAACAATGGGTTTTTTGGTTTTATCATCAGGAATGCGTTGAATTTACCTGTCGTCGGCTTTGAGCTACTGCAGAGAACCTCCCAAGAGGACTCATCGTGTATTACCTCAAAAATCAAAAATTAAGATTCATCGGRACTTTTGCGAGTGGTAACTTGAAATAATGTTAGAGAACTGTCTCAAGAATTTTTTCATATTAAAATTACAGAAAAGATTGTAGATTTTGGCCTGAAAAACGAAAAAAGCCTAAAAATGATGCCATACCGAGGGACAGTCCACGAGGACTACACGGAGGGTGGCCGAGGTTGCGCGCCTCTTCCACTGAGCTCGGCCATGTTTACGAGTTTGCAACACAGAATTCAAGAAATTATTTCTCCATGAAGAAGACGTTTTCCGTAGATCTGACAAACACCATCGTGTAGAGCGATTTTTAAACACCTTTTTTCATATTTTCTTTTTTCAATGGCATTAAATTTTGAACTAGATCTACCCTTTCTTCAAATTGACCAATTTAAACTAATAATTCCTCTATCAACAAAAAGGAGTGCACATTGATTTTTTGGAAAATTGGGTCACATATGTTAATGCGCAATGAATAAGGGCGAAGGTTCATAATTTGCCAAGAAAACTAATCGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>387 268 234 111</canonical_bands>
                <polymorphic_bands>655 234 111</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAGACATTGTTTAACTGAAAG</pcr_primer_p1>
		<pcr_primer_p2>CCAAAATCTACAATCTTTTCTGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAAGACATTGTTTAACTGAAAGGAAAACAATGGGTTTTTTGGTTTTATCATCAGGAATGCGTTGAATTTACCTGTCGTCGGCTTTGAGCTACTGCAGAGAACCTCCCAAGAGGACTCATCGTGTATTACCTCAAAAATCAAAAATTAAGATTCATCGGAACTTTTGCGAGTGGTAACTTGAAATAATGTTAGAGAACTGTCTCAAGAATTTTTTCATATTAAAATTACAGAAAAGATTGTAGATTTTGG</canonical_amplicon>
		<polymorphic_amplicon>GGAAGACATTGTTTAACTGAAAGGAAAACAATGGGTTTTTTGGTTTTATCATCAGGAATGCGTTGAATTTACCTGTCGTCGGCTTTGAGCTACTGCAGAGAACCTCCCAAGAGGACTCATCGTGTATTACCTCAAAAATCAAAAATTAAGATTCATCGGRACTTTTGCGAGTGGTAACTTGAAATAATGTTAGAGAACTGTCTCAAGAATTTTTTCATATTAAAATTACAGAAAAGATTGTAGATTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb491</snp_id>
        <super_contig>c000100830.Contig1</super_contig>
        <contig_pos>82804</contig_pos>
        <strand>+</strand>
        <context>GCCTTTTCAA[C/G]ATTATCAAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGTCGTAAATCATGAGACATTGTGTGCATGCACCAGAGGCGCCTTTTCAA</left_flank>
        <right_flank>ATTATCAAGCCGCGAAAAAATATTTTTCGCTATTTTTTGGAGATTTTCAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTATTCTTCTCGCACCGATCACCACCACATATATAAACTATAAAATGCGTTGAAACTGGTGTGAAATTGAGAGATGACGAAGAAGAAGAAGACGAGGACGATTTGACGATGTTATTTTGCAACCGAGTGTCATTTTGACACAGACGCAGACTAGCATACACCCAAAACTCTCTCCCTATAACACCGTGTCCATCCGAAGAGGCCGGTTACGATATTTGCGCCCCCATCCTCCGCTTTTTGCCTCCCTGTCTTCTTCCCCCCACTATTCTTCATCCGCCTGTGTCTCTTTTTTCCTATTCTTTTCCGTCATTTTCGAGTACTCTTTTCTCTTTTGCGTGTTGCATGTGTATGTATTCCGAACAGTTTGATTGGAGCTTTTTCGTAATGTCCAATTCAAGTTGGAGTCTGTTCAAGTTTTGAGCTAAATTTTTACTGTATGTGCATTTTGTCGTAAATCATGAGACATTGTGTGCATGCACCAGAGGCGCCTTTTCAACATTATCAAGCCGCGAAAAAATATTTTTCGCTATTTTTTGGAGATTTTCAAAGATTTTCAGAACTTTTTTCTTTTTTTCCTCAAATTTTCAATTTTCTAGTCATTTTCCTACAAAAATTCAAAAATCCTTCCGATATGAATCCAAAATTTTGTGTTAAAGTGAGAAATATGGTTTTTCTTGCCGTTTCCTCTCCGTATAATAAGGTTTCCACTAACTTTCCCTTTCTCATTATTTTAATATAAATTTCTAGGTTTTTTTTTCAAACTTTAAAAAATTCTAATTAAATATTAGTTTTAAAAAGCTGACCTTCCTTCTCTCCCTAACGAGGTTCAAATTTATTTTCTTCCGTCCGGTTGTATATGAAATATAATCCGCCCAATCGCAATTAGTGTGACATTTGGCACACCATTCGGCGCCGGCATTATCACAGAAATTCGACAGCAGTGTGCCGTGCACACGTCCTCTTCTTCAAAGTCGCCTGGCTTCGGTCCGTTCGTGGT</canonical>
            <polymorphic>TTCTTATTCTTCTCGCACCGATCACCACCACATATATAAACTATAAAATGCGTTGAAACTGGTGTGAAATTGAGAGATGACGAAGAAGAAGAAGACGAGGACGATTTGACGATGTTATTTTGCAACCGAGTGTCATTTTGACACAGACGCAGACTAGCATACACCCAAAACTCTCTCCCTATAACACCGTGTCCATCCGAAGAGGCCGGTTACGATATTTGCGCCCCCATCCTCCGCTTTTTGCCTCCCTGTCTTCTTCCCCCCACTATTCTTCATCCGCCTGTGTCTCTTTTTTCCTATTCTTTTCCGTCATTTTCGAGTACTCTTTTCTCTTTTGCGTGTTGCATGTGTATGTATTCCGAACAGTTTGATTGGAGCTTTTTCGTAATGTCCAATTCAAGTTGGAGTCTGTTCAAGTTTTGAGCTAAATTTTTACTGTATGTGCATTTTGTCGTAAATCATGAGACATTGTGTGCATGCACCAGAGGCGCCTTTTCAASATTATCAAGCCGCGAAAAAATATTTTTCGCTATTTTTTGGAGATTTTCAAAGATTTTCAGAACTTTTTTCTTTTTTTCCTCAAATTTTCAATTTTCTAGTCATTTTCCTACAAAAATTCAAAAATCCTTCCGATATGAATCCAAAATTTTGTGTTAAAGTGAGAAATATGGTTTTTCTTGCCGTTTCCTCTCCGTATAATAAGGTTTCCACTAACTTTCCCTTTCTCATTATTTTAATATAAATTTCTAGGTTTTTTTTTCAAACTTTAAAAAATTCTAATTAAATATTAGTTTTAAAAAGCTGACCTTCCTTCTCTCCCTAACGAGGTTCAAATTTATTTTCTTCCGTCCGGTTGTATATGAAATATAATCCGCCCAATCGCAATTAGTGTGACATTTGGCACACCATTCGGCGCCGGCATTATCACAGAAATTCGACAGCAGTGTGCCGTGCACACGTCCTCTTCTTCAAAGTCGCCTGGCTTCGGTCCGTTCGTGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATGTATTCCGAACAGTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>CTAGAAAATTGAAAATTTGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTATGTATTCCGAACAGTTTGATTGGAGCTTTTTCGTAATGTCCAATTCAAGTTGGAGTCTGTTCAAGTTTTGAGCTAAATTTTTACTGTATGTGCATTTTGTCGTAAATCATGAGACATTGTGTGCATGCACCAGAGGCGCCTTTTCAACATTATCAAGCCGCGAAAAAATATTTTTCGCTATTTTTTGGAGATTTTCAAAGATTTTCAGAACTTTTTTCTTTTTTTCCTCAAATTTTCAATTTTCTAG</canonical_amplicon>
		<polymorphic_amplicon>GTATGTATTCCGAACAGTTTGATTGGAGCTTTTTCGTAATGTCCAATTCAAGTTGGAGTCTGTTCAAGTTTTGAGCTAAATTTTTACTGTATGTGCATTTTGTCGTAAATCATGAGACATTGTGTGCATGCACCAGAGGCGCCTTTTCAASATTATCAAGCCGCGAAAAAATATTTTTCGCTATTTTTTGGAGATTTTCAAAGATTTTCAGAACTTTTTTCTTTTTTTCCTCAAATTTTCAATTTTCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb492</snp_id>
        <super_contig>c000100830.Contig1</super_contig>
        <contig_pos>96845</contig_pos>
        <strand>+</strand>
        <context>ACAAGTCTTT[C/T]TTGCCAAGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCACAAATCCCTTCATTTTTTAGGATTTCCATAATCTTGAACAAGTCTTT</left_flank>
        <right_flank>TTGCCAAGAGATTATCATTTAGAGTGGAGAAACAGCTTGAAAAATATGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCATATGACCCCAAATTACAAAGTACTTCTCCCATCGCCCAAATCCACTCCAAAATCACACGCCTTCTTCTCTACTCCATCTGAACGGAAGGAAATGGCTCCAATTTCCTTATTTTTGGTCAATTCCCACGAATCAGATGTACTTCTAAAATGAATACGAAAAAGGTGTACGAAATGGATACAAATCGTCTTGTCAAACACAATCCCCTCTCCTTTCATCACTGACACTTTTTTGTGCTCAGTTTCACTTTCTCTCTCTCTCTCCTACTCGTTTTCTTCTAATCCACTTCAAATTGAATCGCCAACCCCCAACCACCTTTCCATGCGCCATTTTTTTATTCTGCATCTCTCAATCTTCCACACTATTTCTTCATTTCTCTGACTCAATTAATCCCGATGTGTTTGCATTTAGAGAAAAGAAGGCTTCTTGTCATTCCCATCTTCTTCCACAAATCCCTTCATTTTTTAGGATTTCCATAATCTTGAACAAGTCTTTCTTGCCAAGAGATTATCATTTAGAGTGGAGAAACAGCTTGAAAAATATGGACAAGTCTCAGAACTCGGTGAGTCTTTTTTCTAAGAATTCTTTAAAGAATTCGTTTCAGATGACCTTTTCTCAGGAAGGTGGTAGCAATCTGAGCGAGCGAGTTATGTTGAATGTTGGTGGCAAGAAGTTTGAGACTACGGTAGCCACGTTGACACGGATTCCGGATACGGTATGGATTAGAAGAAATAGGACCTTCAGATTTTGGAATTTCAAATTCTTTAGATCTTTTCGCCTGTAGTGTCTAGATCATATTGAACATACAGAACCGGCCTAAAAGACATACAAGAACGTGTTTTCAGTTTATTTTGACAGTTTTCAGGAGCCTGAAGCTCGGCTGTCAAGTGCTCGATCACTTTGAAAATTTTGGAGGGTTTAAAATATACCTAGATTGAATTCTTTGCATTTACATAATTTTTCGAAAATCAATAGTTTTTCACCTTTTTTAATTTC</canonical>
            <polymorphic>TTTTCATATGACCCCAAATTACAAAGTACTTCTCCCATCGCCCAAATCCACTCCAAAATCACACGCCTTCTTCTCTACTCCATCTGAACGGAAGGAAATGGCTCCAATTTCCTTATTTTTGGTCAATTCCCACGAATCAGATGTACTTCTAAAATGAATACGAAAAAGGTGTACGAAATGGATACAAATCGTCTTGTCAAACACAATCCCCTCTCCTTTCATCACTGACACTTTTTTGTGCTCAGTTTCACTTTCTCTCTCTCTCTCCTACTCGTTTTCTTCTAATCCACTTCAAATTGAATCGCCAACCCCCAACCACCTTTCCATGCGCCATTTTTTTATTCTGCATCTCTCAATCTTCCACACTATTTCTTCATTTCTCTGACTCAATTAATCCCGATGTGTTTGCATTTAGAGAAAAGAAGGCTTCTTGTCATTCCCATCTTCTTCCACAAATCCCTTCATTTTTTAGGATTTCCATAATCTTGAACAAGTCTTTYTTGCCAAGAGATTATCATTTAGAGTGGAGAAACAGCTTGAAAAATATGGACAAGTCTCAGAACTCGGTGAGTCTTTTTTCTAAGAATTCTTTAAAGAATTCGTTTCAGATGACCTTTTCTCAGGAAGGTGGTAGCAATCTGAGCGAGCGAGTTATGTTGAATGTTGGTGGCAAGAAGTTTGAGACTACGGTAGCCACGTTGACACGGATTCCGGATACGGTATGGATTAGAAGAAATAGGACCTTCAGATTTTGGAATTTCAAATTCTTTAGATCTTTTCGCCTGTAGTGTCTAGATCATATTGAACATACAGAACCGGCCTAAAAGACATACAAGAACGTGTTTTCAGTTTATTTTGACAGTTTTCAGGAGCCTGAAGCTCGGCTGTCAAGTGCTCGATCACTTTGAAAATTTTGGAGGGTTTAAAATATACCTAGATTGAATTCTTTGCATTTACATAATTTTTCGAAAATCAATAGTTTTTCACCTTTTTTAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTCATTTCTCTGACTCAAT</pcr_primer_p1>
		<pcr_primer_p2>CTGAGAAAAGGTCATCTGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTCATTTCTCTGACTCAATTAATCCCGATGTGTTTGCATTTAGAGAAAAGAAGGCTTCTTGTCATTCCCATCTTCTTCCACAAATCCCTTCATTTTTTAGGATTTCCATAATCTTGAACAAGTCTTTCTTGCCAAGAGATTATCATTTAGAGTGGAGAAACAGCTTGAAAAATATGGACAAGTCTCAGAACTCGGTGAGTCTTTTTTCTAAGAATTCTTTAAAGAATTCGTTTCAGATGACCTTTTCTCAG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTCATTTCTCTGACTCAATTAATCCCGATGTGTTTGCATTTAGAGAAAAGAAGGCTTCTTGTCATTCCCATCTTCTTCCACAAATCCCTTCATTTTTTAGGATTTCCATAATCTTGAACAAGTCTTTYTTGCCAAGAGATTATCATTTAGAGTGGAGAAACAGCTTGAAAAATATGGACAAGTCTCAGAACTCGGTGAGTCTTTTTTCTAAGAATTCTTTAAAGAATTCGTTTCAGATGACCTTTTCTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb493</snp_id>
        <super_contig>c000100830.Contig1</super_contig>
        <contig_pos>99043</contig_pos>
        <strand>+</strand>
        <context>AGATCTGAAA[C/T]TTTGAAGAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAGGTGATTTTTTGCTAATTGTAAGATTAGTCTCCGAAAAGATCTGAAA</left_flank>
        <right_flank>TTTGAAGAGATCTAGATCTTCTAAACAGCATATTTATCACTATAGTTGGT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTGCCTTTTTGGTGAAAGATCAGATTGAAATGAGCAATGGAATCAGAAATTACCGTAGGAAGTAACATTCGGAAATTCAGAAGGATTACTGTAGGGGGAAAATATTCAAAAGTGAAAAAGGATTACTGTAGGGGAAAAATATTCGAAAATTAAAGGGATCACTGAAGGGGAAAATATTCGAAAATCAAAAGGATTACGTTTTTCTGATTCCTACGAATCTGGAAATCTTAAAATCTGTAGACCTGCAATAGTTCTTTATGGAAATAATTATCAGAGACGTTTGAGAATTAAGATCATCTGAAGGTGGCCATTTGAATCAAAAAGGGAAGAGGTGCTAACGTAAAAGGGATACAGAGCATGAAAGATACGGTACTGACTTTCTTGTAATTTCCAATGACACCTAATCTGAATTTCAGGCTCCGACTCGAACAGGAGTTCAGATTTGTTTGAGGTGATTTTTTGCTAATTGTAAGATTAGTCTCCGAAAAGATCTGAAATTTTGAAGAGATCTAGATCTTCTAAACAGCATATTTATCACTATAGTTGGTTGATTTTCATGAGTACATTTTCACTGCTAGGAACCCTATGTTTCTCCTCGCTTTTTGTTTTCTTGTGTTCTGTAGAATTTCAAAAAGCTCTTATGTACCCTCATTTAGTACAGCGTTCAATTCTCGAGTTTTGGGAGTTTCTCCATCGGCTCAAAAAAATAAAGATTTTTTCTGTTTTATTTTTTCCCATAAACTCCTCCGCCGTTTCCTCTGCTTGCTTCCATGGTTGCATTGAACGGGTGCTTCGCAACGACTCCCGACATCTCCCTCCGATTCACTTTCATTCTTCTTTTCGACTTCACTTCCAACATGCGCTCTTGCCTTCTTCTCCTTTTTTCAATTTTCAGTGAGTAGATTTTTTTACTTTTTACGGAATACAGTGCATATTTTTAGTCGTGTTCGCATCGAGTCAATCTACATCTGATGCTCTCTATTCATCATCAACTGAAT</canonical>
            <polymorphic>CTGTGCCTTTTTGGTGAAAGATCAGATTGAAATGAGCAATGGAATCAGAAATTACCGTAGGAAGTAACATTCGGAAATTCAGAAGGATTACTGTAGGGGGAAAATATTCAAAAGTGAAAAAGGATTACTGTAGGGGAAAAATATTCGAAAATTAAAGGGATCACTGAAGGGGAAAATATTCGAAAATCAAAAGGATTACGTTTTTCTGATTCCTACGAATCTGGAAATCTTAAAATCTGTAGACCTGCAATAGTTCTTTATGGAAATAATTATCAGAGACGTTTGAGAATTAAGATCATCTGAAGGTGGCCATTTGAATCAAAAAGGGAAGAGGTGCTAACGTAAAAGGGATACAGAGCATGAAAGATACGGTACTGACTTTCTTGTAATTTCCAATGACACCTAATCTGAATTTCAGGCTCCGACTCGAACAGGAGTTCAGATTTGTTTGAGGTGATTTTTTGCTAATTGTAAGATTAGTCTCCGAAAAGATCTGAAAYTTTGAAGAGATCTAGATCTTCTAAACAGCATATTTATCACTATAGTTGGTTGATTTTCATGAGTACATTTTCACTGCTAGGAACCCTATGTTTCTCCTCGCTTTTTGTTTTCTTGTGTTCTGTAGAATTTCAAAAAGCTCTTATGTACCCTCATTTAGTACAGCGTTCAATTCTCGAGTTTTGGGAGTTTCTCCATCGGCTCAAAAAAATAAAGATTTTTTCTGTTTTATTTTTTCCCATAAACTCCTCCGCCGTTTCCTCTGCTTGCTTCCATGGTTGCATTGAACGGGTGCTTCGCAACGACTCCCGACATCTCCCTCCGATTCACTTTCATTCTTCTTTTCGACTTCACTTCCAACATGCGCTCTTGCCTTCTTCTCCTTTTTTCAATTTTCAGTGAGTAGATTTTTTTACTTTTTACGGAATACAGTGCATATTTTTAGTCGTGTTCGCATCGAGTCAATCTACATCTGATGCTCTCTATTCATCATCAACTGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>375 335 128 87 75</canonical_bands>
                <polymorphic_bands>375 335 215 75</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>220 128 118 112 100 74 56 49 43 31 26 23 20</canonical_bands>
                <polymorphic_bands>220 159 118 112 100 74 56 49 43 26 23 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTAATTTCCAATGACACCTAAT</pcr_primer_p1>
		<pcr_primer_p2>TTGAAATTCTACAGAACACAAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTAATTTCCAATGACACCTAATCTGAATTTCAGGCTCCGACTCGAACAGGAGTTCAGATTTGTTTGAGGTGATTTTTTGCTAATTGTAAGATTAGTCTCCGAAAAGATCTGAAATTTTGAAGAGATCTAGATCTTCTAAACAGCATATTTATCACTATAGTTGGTTGATTTTCATGAGTACATTTTCACTGCTAGGAACCCTATGTTTCTCCTCGCTTTTTGTTTTCTTGTGTTCTGTAGAATTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TGTAATTTCCAATGACACCTAATCTGAATTTCAGGCTCCGACTCGAACAGGAGTTCAGATTTGTTTGAGGTGATTTTTTGCTAATTGTAAGATTAGTCTCCGAAAAGATCTGAAAYTTTGAAGAGATCTAGATCTTCTAAACAGCATATTTATCACTATAGTTGGTTGATTTTCATGAGTACATTTTCACTGCTAGGAACCCTATGTTTCTCCTCGCTTTTTGTTTTCTTGTGTTCTGTAGAATTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb494</snp_id>
        <super_contig>c000100830.Contig1</super_contig>
        <contig_pos>99027</contig_pos>
        <strand>+</strand>
        <context>AGATTAGTCT[C/T]CGAAAAGATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAGTTCAGATTTGTTTGAGGTGATTTTTTGCTAATTGTAAGATTAGTCT</left_flank>
        <right_flank>CGAAAAGATCTGAAATTTTGAAGAGATCTAGATCTTCTAAACAGCATATT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATAAAGTATAATTTCTGTGCCTTTTTGGTGAAAGATCAGATTGAAATGAGCAATGGAATCAGAAATTACCGTAGGAAGTAACATTCGGAAATTCAGAAGGATTACTGTAGGGGGAAAATATTCAAAAGTGAAAAAGGATTACTGTAGGGGAAAAATATTCGAAAATTAAAGGGATCACTGAAGGGGAAAATATTCGAAAATCAAAAGGATTACGTTTTTCTGATTCCTACGAATCTGGAAATCTTAAAATCTGTAGACCTGCAATAGTTCTTTATGGAAATAATTATCAGAGACGTTTGAGAATTAAGATCATCTGAAGGTGGCCATTTGAATCAAAAAGGGAAGAGGTGCTAACGTAAAAGGGATACAGAGCATGAAAGATACGGTACTGACTTTCTTGTAATTTCCAATGACACCTAATCTGAATTTCAGGCTCCGACTCGAACAGGAGTTCAGATTTGTTTGAGGTGATTTTTTGCTAATTGTAAGATTAGTCTCCGAAAAGATCTGAAATTTTGAAGAGATCTAGATCTTCTAAACAGCATATTTATCACTATAGTTGGTTGATTTTCATGAGTACATTTTCACTGCTAGGAACCCTATGTTTCTCCTCGCTTTTTGTTTTCTTGTGTTCTGTAGAATTTCAAAAAGCTCTTATGTACCCTCATTTAGTACAGCGTTCAATTCTCGAGTTTTGGGAGTTTCTCCATCGGCTCAAAAAAATAAAGATTTTTTCTGTTTTATTTTTTCCCATAAACTCCTCCGCCGTTTCCTCTGCTTGCTTCCATGGTTGCATTGAACGGGTGCTTCGCAACGACTCCCGACATCTCCCTCCGATTCACTTTCATTCTTCTTTTCGACTTCACTTCCAACATGCGCTCTTGCCTTCTTCTCCTTTTTTCAATTTTCAGTGAGTAGATTTTTTTACTTTTTACGGAATACAGTGCATATTTTTAGTCGTGTTCGCATCGAGTCAATCTACATCTGATGCTCTCTAT</canonical>
            <polymorphic>AAATAAAGTATAATTTCTGTGCCTTTTTGGTGAAAGATCAGATTGAAATGAGCAATGGAATCAGAAATTACCGTAGGAAGTAACATTCGGAAATTCAGAAGGATTACTGTAGGGGGAAAATATTCAAAAGTGAAAAAGGATTACTGTAGGGGAAAAATATTCGAAAATTAAAGGGATCACTGAAGGGGAAAATATTCGAAAATCAAAAGGATTACGTTTTTCTGATTCCTACGAATCTGGAAATCTTAAAATCTGTAGACCTGCAATAGTTCTTTATGGAAATAATTATCAGAGACGTTTGAGAATTAAGATCATCTGAAGGTGGCCATTTGAATCAAAAAGGGAAGAGGTGCTAACGTAAAAGGGATACAGAGCATGAAAGATACGGTACTGACTTTCTTGTAATTTCCAATGACACCTAATCTGAATTTCAGGCTCCGACTCGAACAGGAGTTCAGATTTGTTTGAGGTGATTTTTTGCTAATTGTAAGATTAGTCTYCGAAAAGATCTGAAATTTTGAAGAGATCTAGATCTTCTAAACAGCATATTTATCACTATAGTTGGTTGATTTTCATGAGTACATTTTCACTGCTAGGAACCCTATGTTTCTCCTCGCTTTTTGTTTTCTTGTGTTCTGTAGAATTTCAAAAAGCTCTTATGTACCCTCATTTAGTACAGCGTTCAATTCTCGAGTTTTGGGAGTTTCTCCATCGGCTCAAAAAAATAAAGATTTTTTCTGTTTTATTTTTTCCCATAAACTCCTCCGCCGTTTCCTCTGCTTGCTTCCATGGTTGCATTGAACGGGTGCTTCGCAACGACTCCCGACATCTCCCTCCGATTCACTTTCATTCTTCTTTTCGACTTCACTTCCAACATGCGCTCTTGCCTTCTTCTCCTTTTTTCAATTTTCAGTGAGTAGATTTTTTTACTTTTTACGGAATACAGTGCATATTTTTAGTCGTGTTCGCATCGAGTCAATCTACATCTGATGCTCTCTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>326 151 126 108 68 44 40 26 26 23 18 14 12 10 8</canonical_bands>
                <polymorphic_bands>326 151 126 108 68 54 40 26 26 23 18 14 12 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTAATTTCCAATGACACCTAAT</pcr_primer_p1>
		<pcr_primer_p2>TTGAAATTCTACAGAACACAAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTAATTTCCAATGACACCTAATCTGAATTTCAGGCTCCGACTCGAACAGGAGTTCAGATTTGTTTGAGGTGATTTTTTGCTAATTGTAAGATTAGTCTCCGAAAAGATCTGAAATTTTGAAGAGATCTAGATCTTCTAAACAGCATATTTATCACTATAGTTGGTTGATTTTCATGAGTACATTTTCACTGCTAGGAACCCTATGTTTCTCCTCGCTTTTTGTTTTCTTGTGTTCTGTAGAATTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TGTAATTTCCAATGACACCTAATCTGAATTTCAGGCTCCGACTCGAACAGGAGTTCAGATTTGTTTGAGGTGATTTTTTGCTAATTGTAAGATTAGTCTYCGAAAAGATCTGAAATTTTGAAGAGATCTAGATCTTCTAAACAGCATATTTATCACTATAGTTGGTTGATTTTCATGAGTACATTTTCACTGCTAGGAACCCTATGTTTCTCCTCGCTTTTTGTTTTCTTGTGTTCTGTAGAATTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb495</snp_id>
        <super_contig>c000100830.Contig1</super_contig>
        <contig_pos>99004</contig_pos>
        <strand>+</strand>
        <context>GAGGTGATTT[G/T]TTGCTAATTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTTCAGGCTCCGACTCGAACAGGAGTTCAGATTTGTTTGAGGTGATTT</left_flank>
        <right_flank>TTGCTAATTGTAAGATTAGTCTCCGAAAAGATCTGAAATTTTGAAGAGAT</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATACTCACACTTCTATTTGGGAAATAAAGTATAATTTCTGTGCCTTTTTGGTGAAAGATCAGATTGAAATGAGCAATGGAATCAGAAATTACCGTAGGAAGTAACATTCGGAAATTCAGAAGGATTACTGTAGGGGGAAAATATTCAAAAGTGAAAAAGGATTACTGTAGGGGAAAAATATTCGAAAATTAAAGGGATCACTGAAGGGGAAAATATTCGAAAATCAAAAGGATTACGTTTTTCTGATTCCTACGAATCTGGAAATCTTAAAATCTGTAGACCTGCAATAGTTCTTTATGGAAATAATTATCAGAGACGTTTGAGAATTAAGATCATCTGAAGGTGGCCATTTGAATCAAAAAGGGAAGAGGTGCTAACGTAAAAGGGATACAGAGCATGAAAGATACGGTACTGACTTTCTTGTAATTTCCAATGACACCTAATCTGAATTTCAGGCTCCGACTCGAACAGGAGTTCAGATTTGTTTGAGGTGATTTTTTGCTAATTGTAAGATTAGTCTCCGAAAAGATCTGAAATTTTGAAGAGATCTAGATCTTCTAAACAGCATATTTATCACTATAGTTGGTTGATTTTCATGAGTACATTTTCACTGCTAGGAACCCTATGTTTCTCCTCGCTTTTTGTTTTCTTGTGTTCTGTAGAATTTCAAAAAGCTCTTATGTACCCTCATTTAGTACAGCGTTCAATTCTCGAGTTTTGGGAGTTTCTCCATCGGCTCAAAAAAATAAAGATTTTTTCTGTTTTATTTTTTCCCATAAACTCCTCCGCCGTTTCCTCTGCTTGCTTCCATGGTTGCATTGAACGGGTGCTTCGCAACGACTCCCGACATCTCCCTCCGATTCACTTTCATTCTTCTTTTCGACTTCACTTCCAACATGCGCTCTTGCCTTCTTCTCCTTTTTTCAATTTTCAGTGAGTAGATTTTTTTACTTTTTACGGAATACAGTGCATATTTTTAGTCGTGTTCGCATCGAGTC</canonical>
            <polymorphic>TGATACTCACACTTCTATTTGGGAAATAAAGTATAATTTCTGTGCCTTTTTGGTGAAAGATCAGATTGAAATGAGCAATGGAATCAGAAATTACCGTAGGAAGTAACATTCGGAAATTCAGAAGGATTACTGTAGGGGGAAAATATTCAAAAGTGAAAAAGGATTACTGTAGGGGAAAAATATTCGAAAATTAAAGGGATCACTGAAGGGGAAAATATTCGAAAATCAAAAGGATTACGTTTTTCTGATTCCTACGAATCTGGAAATCTTAAAATCTGTAGACCTGCAATAGTTCTTTATGGAAATAATTATCAGAGACGTTTGAGAATTAAGATCATCTGAAGGTGGCCATTTGAATCAAAAAGGGAAGAGGTGCTAACGTAAAAGGGATACAGAGCATGAAAGATACGGTACTGACTTTCTTGTAATTTCCAATGACACCTAATCTGAATTTCAGGCTCCGACTCGAACAGGAGTTCAGATTTGTTTGAGGTGATTTKTTGCTAATTGTAAGATTAGTCTCCGAAAAGATCTGAAATTTTGAAGAGATCTAGATCTTCTAAACAGCATATTTATCACTATAGTTGGTTGATTTTCATGAGTACATTTTCACTGCTAGGAACCCTATGTTTCTCCTCGCTTTTTGTTTTCTTGTGTTCTGTAGAATTTCAAAAAGCTCTTATGTACCCTCATTTAGTACAGCGTTCAATTCTCGAGTTTTGGGAGTTTCTCCATCGGCTCAAAAAAATAAAGATTTTTTCTGTTTTATTTTTTCCCATAAACTCCTCCGCCGTTTCCTCTGCTTGCTTCCATGGTTGCATTGAACGGGTGCTTCGCAACGACTCCCGACATCTCCCTCCGATTCACTTTCATTCTTCTTTTCGACTTCACTTCCAACATGCGCTCTTGCCTTCTTCTCCTTTTTTCAATTTTCAGTGAGTAGATTTTTTTACTTTTTACGGAATACAGTGCATATTTTTAGTCGTGTTCGCATCGAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAATTTCCAATGACACCTAAT</pcr_primer_p1>
		<pcr_primer_p2>TTGAAATTCTACAGAACACAAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTAATTTCCAATGACACCTAATCTGAATTTCAGGCTCCGACTCGAACAGGAGTTCAGATTTGTTTGAGGTGATTTTTTGCTAATTGTAAGATTAGTCTCCGAAAAGATCTGAAATTTTGAAGAGATCTAGATCTTCTAAACAGCATATTTATCACTATAGTTGGTTGATTTTCATGAGTACATTTTCACTGCTAGGAACCCTATGTTTCTCCTCGCTTTTTGTTTTCTTGTGTTCTGTAGAATTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TGTAATTTCCAATGACACCTAATCTGAATTTCAGGCTCCGACTCGAACAGGAGTTCAGATTTGTTTGAGGTGATTTKTTGCTAATTGTAAGATTAGTCTCCGAAAAGATCTGAAATTTTGAAGAGATCTAGATCTTCTAAACAGCATATTTATCACTATAGTTGGTTGATTTTCATGAGTACATTTTCACTGCTAGGAACCCTATGTTTCTCCTCGCTTTTTGTTTTCTTGTGTTCTGTAGAATTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb496</snp_id>
        <super_contig>c000100830.Contig1</super_contig>
        <contig_pos>98971</contig_pos>
        <strand>+</strand>
        <context>GGCTCCGACT[C/T]GAACAGGAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTTTCTTGTAATTTCCAATGACACCTAATCTGAATTTCAGGCTCCGACT</left_flank>
        <right_flank>GAACAGGAGTTCAGATTTGTTTGAGGTGATTTTTTGCTAATTGTAAGATT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATAATTGGGAGACAATTGGAATTTCAAGTTATGATACTCACACTTCTATTTGGGAAATAAAGTATAATTTCTGTGCCTTTTTGGTGAAAGATCAGATTGAAATGAGCAATGGAATCAGAAATTACCGTAGGAAGTAACATTCGGAAATTCAGAAGGATTACTGTAGGGGGAAAATATTCAAAAGTGAAAAAGGATTACTGTAGGGGAAAAATATTCGAAAATTAAAGGGATCACTGAAGGGGAAAATATTCGAAAATCAAAAGGATTACGTTTTTCTGATTCCTACGAATCTGGAAATCTTAAAATCTGTAGACCTGCAATAGTTCTTTATGGAAATAATTATCAGAGACGTTTGAGAATTAAGATCATCTGAAGGTGGCCATTTGAATCAAAAAGGGAAGAGGTGCTAACGTAAAAGGGATACAGAGCATGAAAGATACGGTACTGACTTTCTTGTAATTTCCAATGACACCTAATCTGAATTTCAGGCTCCGACTCGAACAGGAGTTCAGATTTGTTTGAGGTGATTTTTTGCTAATTGTAAGATTAGTCTCCGAAAAGATCTGAAATTTTGAAGAGATCTAGATCTTCTAAACAGCATATTTATCACTATAGTTGGTTGATTTTCATGAGTACATTTTCACTGCTAGGAACCCTATGTTTCTCCTCGCTTTTTGTTTTCTTGTGTTCTGTAGAATTTCAAAAAGCTCTTATGTACCCTCATTTAGTACAGCGTTCAATTCTCGAGTTTTGGGAGTTTCTCCATCGGCTCAAAAAAATAAAGATTTTTTCTGTTTTATTTTTTCCCATAAACTCCTCCGCCGTTTCCTCTGCTTGCTTCCATGGTTGCATTGAACGGGTGCTTCGCAACGACTCCCGACATCTCCCTCCGATTCACTTTCATTCTTCTTTTCGACTTCACTTCCAACATGCGCTCTTGCCTTCTTCTCCTTTTTTCAATTTTCAGTGAGTAGATTTTTTTACTTTTTACGGAATAC</canonical>
            <polymorphic>TGATAATTGGGAGACAATTGGAATTTCAAGTTATGATACTCACACTTCTATTTGGGAAATAAAGTATAATTTCTGTGCCTTTTTGGTGAAAGATCAGATTGAAATGAGCAATGGAATCAGAAATTACCGTAGGAAGTAACATTCGGAAATTCAGAAGGATTACTGTAGGGGGAAAATATTCAAAAGTGAAAAAGGATTACTGTAGGGGAAAAATATTCGAAAATTAAAGGGATCACTGAAGGGGAAAATATTCGAAAATCAAAAGGATTACGTTTTTCTGATTCCTACGAATCTGGAAATCTTAAAATCTGTAGACCTGCAATAGTTCTTTATGGAAATAATTATCAGAGACGTTTGAGAATTAAGATCATCTGAAGGTGGCCATTTGAATCAAAAAGGGAAGAGGTGCTAACGTAAAAGGGATACAGAGCATGAAAGATACGGTACTGACTTTCTTGTAATTTCCAATGACACCTAATCTGAATTTCAGGCTCCGACTYGAACAGGAGTTCAGATTTGTTTGAGGTGATTTTTTGCTAATTGTAAGATTAGTCTCCGAAAAGATCTGAAATTTTGAAGAGATCTAGATCTTCTAAACAGCATATTTATCACTATAGTTGGTTGATTTTCATGAGTACATTTTCACTGCTAGGAACCCTATGTTTCTCCTCGCTTTTTGTTTTCTTGTGTTCTGTAGAATTTCAAAAAGCTCTTATGTACCCTCATTTAGTACAGCGTTCAATTCTCGAGTTTTGGGAGTTTCTCCATCGGCTCAAAAAAATAAAGATTTTTTCTGTTTTATTTTTTCCCATAAACTCCTCCGCCGTTTCCTCTGCTTGCTTCCATGGTTGCATTGAACGGGTGCTTCGCAACGACTCCCGACATCTCCCTCCGATTCACTTTCATTCTTCTTTTCGACTTCACTTCCAACATGCGCTCTTGCCTTCTTCTCCTTTTTTCAATTTTCAGTGAGTAGATTTTTTTACTTTTTACGGAATAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>247 247 218 169 84 35</canonical_bands>
                <polymorphic_bands>494 218 169 84 35</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>378 166 114 108 106 99 20 9</canonical_bands>
                <polymorphic_bands>486 166 114 106 99 20 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTAACGTAAAAGGGATACAGA</pcr_primer_p1>
		<pcr_primer_p2>TTCCTAGCAGTGAAAATGTACTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCTAACGTAAAAGGGATACAGAGCATGAAAGATACGGTACTGACTTTCTTGTAATTTCCAATGACACCTAATCTGAATTTCAGGCTCCGACTCGAACAGGAGTTCAGATTTGTTTGAGGTGATTTTTTGCTAATTGTAAGATTAGTCTCCGAAAAGATCTGAAATTTTGAAGAGATCTAGATCTTCTAAACAGCATATTTATCACTATAGTTGGTTGATTTTCATGAGTACATTTTCACTGCTAGGAA</canonical_amplicon>
		<polymorphic_amplicon>GCTAACGTAAAAGGGATACAGAGCATGAAAGATACGGTACTGACTTTCTTGTAATTTCCAATGACACCTAATCTGAATTTCAGGCTCCGACTYGAACAGGAGTTCAGATTTGTTTGAGGTGATTTTTTGCTAATTGTAAGATTAGTCTCCGAAAAGATCTGAAATTTTGAAGAGATCTAGATCTTCTAAACAGCATATTTATCACTATAGTTGGTTGATTTTCATGAGTACATTTTCACTGCTAGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb497</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>26047</contig_pos>
        <strand>+</strand>
        <context>CCACCCCGCT[C/T]CTCAATGTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAACGCGGTGAGTAGGCGCCTCGCCGTTCTTATACGCCGTCCACCCCGCT</left_flank>
        <right_flank>CTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTCTTAATTCCAACATAAAATGTTTATCTTTAGAAGTTTCAGCCAATTTTCAGCCAAAAATAAGCAGTTTTCAGCCAAAAACAGGATCATAACTAAATTGGGCGTAGTTAGGCTTAAAATCGAGATTTTCTTGTTGGATTTTTTGCATTTTTCTTGTCTTATGAACTTAAAATTTGTATTTCACTGAAAATTCTAAATTTCTACTAAAGGTGTCTTAGATTTTCAGCCATTTTCAGCCAAAACTAGAAAATACTGCTATATGCTTCATTTTCAACCGATTTCCATCTATTTTTTTTTTTCGAATATCCCTCTATTATTATCTTTTACTAATCATTTTTCCATCTTCCAGTGCCCCTCCATTCCTGCGTCTCGTCGAAAAGGACATCATCTCTCCGGCCTCCCCATCCAACACACTCTCCTCCTCCTCCACCACCCTCCTCTTCTCTCAACGCGGTGAGTAGGCGCCTCGCCGTTCTTATACGCCGTCCACCCCGCTCCTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATTTTTTGAAGAAACGCCATTAAATGAATATTCTGAAAAATTCAATTTTCAGCCAAATGTCCAACTGGCCAAGATGTCATTTTCGTAAGATCTGATGACGTAGAAGCTTCCAATTCAAATTCCAAATACGTGGAAATCACTGAAGACGACTGTGTCTTCGCCTGCCTCACAAATTCCCGTCCAGGGGGCGGAGCTTCGGATTGCTCAGCTTTAGAATACGATAAGACACGTGGATTTTGTTATTTGATGGGGAATATACCTAATGATGATATGGCA</canonical>
            <polymorphic>TTTCTCTTAATTCCAACATAAAATGTTTATCTTTAGAAGTTTCAGCCAATTTTCAGCCAAAAATAAGCAGTTTTCAGCCAAAAACAGGATCATAACTAAATTGGGCGTAGTTAGGCTTAAAATCGAGATTTTCTTGTTGGATTTTTTGCATTTTTCTTGTCTTATGAACTTAAAATTTGTATTTCACTGAAAATTCTAAATTTCTACTAAAGGTGTCTTAGATTTTCAGCCATTTTCAGCCAAAACTAGAAAATACTGCTATATGCTTCATTTTCAACCGATTTCCATCTATTTTTTTTTTTCGAATATCCCTCTATTATTATCTTTTACTAATCATTTTTCCATCTTCCAGTGCCCCTCCATTCCTGCGTCTCGTCGAAAAGGACATCATCTCTCCGGCCTCCCCATCCAACACACTCTCCTCCTCCTCCACCACCCTCCTCTTCTCTCAACGCGGTGAGTAGGCGCCTCGCCGTTCTTATACGCCGTCCACCCCGCTYCTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATTTTTTGAAGAAACGCCATTAAATGAATATTCTGAAAAATTCAATTTTCAGCCAAATGTCCAACTGGCCAAGATGTCATTTTCGTAAGATCTGATGACGTAGAAGCTTCCAATTCAAATTCCAAATACGTGGAAATCACTGAAGACGACTGTGTCTTCGCCTGCCTCACAAATTCCCGTCCAGGGGGCGGAGCTTCGGATTGCTCAGCTTTAGAATACGATAAGACACGTGGATTTTGTTATTTGATGGGGAATATACCTAATGATGATATGGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCAACACACTCTCCTCCT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGACCAAAATCCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>ATCCAACACACTCTCCTCCTCCTCCACCACCCTCCTCTTCTCTCAACGCGGTGAGTAGGCGCCTCGCCGTTCTTATACGCCGTCCACCCCGCTCCTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATCCAACACACTCTCCTCCTCCTCCACCACCCTCCTCTTCTCTCAACGCGGTGAGTAGGCGCCTCGCCGTTCTTATACGCCGTCCACCCCGCTYCTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb498</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>26017</contig_pos>
        <strand>+</strand>
        <context>AGTARGCGCC[C/T]CGCCGTTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCTCCTCCTCCACCACCCTCCTCTTCTCTCAACGCGGTGAGTAGGCGCC</left_flank>
        <right_flank>CGCCGTTCTTATACGCCGTCCACCCCGCTCCTCAATGTGTGGGGGTATAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGCATTTTCCAGGTTTTCAAGTTGATTTTCTCTTAATTCCAACATAAAATGTTTATCTTTAGAAGTTTCAGCCAATTTTCAGCCAAAAATAAGCAGTTTTCAGCCAAAAACAGGATCATAACTAAATTGGGCGTAGTTAGGCTTAAAATCGAGATTTTCTTGTTGGATTTTTTGCATTTTTCTTGTCTTATGAACTTAAAATTTGTATTTCACTGAAAATTCTAAATTTCTACTAAAGGTGTCTTAGATTTTCAGCCATTTTCAGCCAAAACTAGAAAATACTGCTATATGCTTCATTTTCAACCGATTTCCATCTATTTTTTTTTTTCGAATATCCCTCTATTATTATCTTTTACTAATCATTTTTCCATCTTCCAGTGCCCCTCCATTCCTGCGTCTCGTCGAAAAGGACATCATCTCTCCGGCCTCCCCATCCAACACACTCTCCTCCTCCTCCACCACCCTCCTCTTCTCTCAACGCGGTGAGTAGGCGCCTCGCCGTTCTTATACGCCGTCCACCCCGCTCCTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATTTTTTGAAGAAACGCCATTAAATGAATATTCTGAAAAATTCAATTTTCAGCCAAATGTCCAACTGGCCAAGATGTCATTTTCGTAAGATCTGATGACGTAGAAGCTTCCAATTCAAATTCCAAATACGTGGAAATCACTGAAGACGACTGTGTCTTCGCCTGCCTCACAAATTCCCGTCCAGGGGGCGGAGCTTCGGATTGCTCAGCTTTAGAATACGATAAGACACGTGGATTTTGTTATTTG</canonical>
            <polymorphic>TTTTTGCATTTTCCAGGTTTTCAAGTTGATTTTCTCTTAATTCCAACATAAAATGTTTATCTTTAGAAGTTTCAGCCAATTTTCAGCCAAAAATAAGCAGTTTTCAGCCAAAAACAGGATCATAACTAAATTGGGCGTAGTTAGGCTTAAAATCGAGATTTTCTTGTTGGATTTTTTGCATTTTTCTTGTCTTATGAACTTAAAATTTGTATTTCACTGAAAATTCTAAATTTCTACTAAAGGTGTCTTAGATTTTCAGCCATTTTCAGCCAAAACTAGAAAATACTGCTATATGCTTCATTTTCAACCGATTTCCATCTATTTTTTTTTTTCGAATATCCCTCTATTATTATCTTTTACTAATCATTTTTCCATCTTCCAGTGCCCCTCCATTCCTGCGTCTCGTCGAAAAGGACATCATCTCTCCGGCCTCCCCATCCAACACACTCTCCTCCTCCTCCACCACCCTCCTCTTCTCTCAACGCGGTGAGTAGGCGCCYCGCCGTTCTTATACGCCGTCCACCCCGCTCCTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATTTTTTGAAGAAACGCCATTAAATGAATATTCTGAAAAATTCAATTTTCAGCCAAATGTCCAACTGGCCAAGATGTCATTTTCGTAAGATCTGATGACGTAGAAGCTTCCAATTCAAATTCCAAATACGTGGAAATCACTGAAGACGACTGTGTCTTCGCCTGCCTCACAAATTCCCGTCCAGGGGGCGGAGCTTCGGATTGCTCAGCTTTAGAATACGATAAGACACGTGGATTTTGTTATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCAACACACTCTCCTCCT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGACCAAAATCCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>ATCCAACACACTCTCCTCCTCCTCCACCACCCTCCTCTTCTCTCAACGCGGTGAGTAGGCGCCTCGCCGTTCTTATACGCCGTCCACCCCGCTCCTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATCCAACACACTCTCCTCCTCCTCCACCACCCTCCTCTTCTCTCAACGCGGTGAGTAGGCGCCYCGCCGTTCTTATACGCCGTCCACCCCGCTCCTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb499</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>26011</contig_pos>
        <strand>+</strand>
        <context>GCGGTGAGTA[A/G]GCGCCYCGCC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACACTCTCCTCCTCCTCCACCACCCTCCTCTTCTCTCAACGCGGTGAGTA</left_flank>
        <right_flank>GCGCCTCGCCGTTCTTATACGCCGTCCACCCCGCTCCTCAATGTGTGGGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTAGTTTTTTGCATTTTCCAGGTTTTCAAGTTGATTTTCTCTTAATTCCAACATAAAATGTTTATCTTTAGAAGTTTCAGCCAATTTTCAGCCAAAAATAAGCAGTTTTCAGCCAAAAACAGGATCATAACTAAATTGGGCGTAGTTAGGCTTAAAATCGAGATTTTCTTGTTGGATTTTTTGCATTTTTCTTGTCTTATGAACTTAAAATTTGTATTTCACTGAAAATTCTAAATTTCTACTAAAGGTGTCTTAGATTTTCAGCCATTTTCAGCCAAAACTAGAAAATACTGCTATATGCTTCATTTTCAACCGATTTCCATCTATTTTTTTTTTTCGAATATCCCTCTATTATTATCTTTTACTAATCATTTTTCCATCTTCCAGTGCCCCTCCATTCCTGCGTCTCGTCGAAAAGGACATCATCTCTCCGGCCTCCCCATCCAACACACTCTCCTCCTCCTCCACCACCCTCCTCTTCTCTCAACGCGGTGAGTAGGCGCCTCGCCGTTCTTATACGCCGTCCACCCCGCTCCTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATTTTTTGAAGAAACGCCATTAAATGAATATTCTGAAAAATTCAATTTTCAGCCAAATGTCCAACTGGCCAAGATGTCATTTTCGTAAGATCTGATGACGTAGAAGCTTCCAATTCAAATTCCAAATACGTGGAAATCACTGAAGACGACTGTGTCTTCGCCTGCCTCACAAATTCCCGTCCAGGGGGCGGAGCTTCGGATTGCTCAGCTTTAGAATACGATAAGACACGTGGATTTTGT</canonical>
            <polymorphic>TCTAGTTTTTTGCATTTTCCAGGTTTTCAAGTTGATTTTCTCTTAATTCCAACATAAAATGTTTATCTTTAGAAGTTTCAGCCAATTTTCAGCCAAAAATAAGCAGTTTTCAGCCAAAAACAGGATCATAACTAAATTGGGCGTAGTTAGGCTTAAAATCGAGATTTTCTTGTTGGATTTTTTGCATTTTTCTTGTCTTATGAACTTAAAATTTGTATTTCACTGAAAATTCTAAATTTCTACTAAAGGTGTCTTAGATTTTCAGCCATTTTCAGCCAAAACTAGAAAATACTGCTATATGCTTCATTTTCAACCGATTTCCATCTATTTTTTTTTTTCGAATATCCCTCTATTATTATCTTTTACTAATCATTTTTCCATCTTCCAGTGCCCCTCCATTCCTGCGTCTCGTCGAAAAGGACATCATCTCTCCGGCCTCCCCATCCAACACACTCTCCTCCTCCTCCACCACCCTCCTCTTCTCTCAACGCGGTGAGTARGCGCCTCGCCGTTCTTATACGCCGTCCACCCCGCTCCTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATTTTTTGAAGAAACGCCATTAAATGAATATTCTGAAAAATTCAATTTTCAGCCAAATGTCCAACTGGCCAAGATGTCATTTTCGTAAGATCTGATGACGTAGAAGCTTCCAATTCAAATTCCAAATACGTGGAAATCACTGAAGACGACTGTGTCTTCGCCTGCCTCACAAATTCCCGTCCAGGGGGCGGAGCTTCGGATTGCTCAGCTTTAGAATACGATAAGACACGTGGATTTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>500 391 109</canonical_bands>
                <polymorphic_bands>609 391</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCGCC</site>
                <isoschizomers>
                    <enzyme>BbeI</enzyme>
                    <enzyme>EgeI</enzyme>
                    <enzyme>EheI</enzyme>
                    <enzyme>KasI</enzyme>
                    <enzyme>Mly113I</enzyme>
                    <enzyme>NarI</enzyme>
                    <enzyme>SfoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 389 90 19</canonical_bands>
                <polymorphic_bands>592 389 19</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAACCGATTTCCATCTAT</pcr_primer_p1>
		<pcr_primer_p2>CTATACCCCCACACATTGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTCAACCGATTTCCATCTATTTTTTTTTTTCGAATATCCCTCTATTATTATCTTTTACTAATCATTTTTCCATCTTCCAGTGCCCCTCCATTCCTGCGTCTCGTCGAAAAGGACATCATCTCTCCGGCCTCCCCATCCAACACACTCTCCTCCTCCTCCACCACCCTCCTCTTCTCTCAACGCGGTGAGTAGGCGCCTCGCCGTTCTTATACGCCGTCCACCCCGCTCCTCAATGTGTGGGGGTATAG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAACCGATTTCCATCTATTTTTTTTTTTCGAATATCCCTCTATTATTATCTTTTACTAATCATTTTTCCATCTTCCAGTGCCCCTCCATTCCTGCGTCTCGTCGAAAAGGACATCATCTCTCCGGCCTCCCCATCCAACACACTCTCCTCCTCCTCCACCACCCTCCTCTTCTCTCAACGCGGTGAGTARGCGCCTCGCCGTTCTTATACGCCGTCCACCCCGCTCCTCAATGTGTGGGGGTATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb500</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>26343</contig_pos>
        <strand>+</strand>
        <context>CAACTGGCCA[A/G]GATGTCATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATGAATATTCTGAAAAATTCAATTTTCAGCCAAATGTCCAACTGGCCA</left_flank>
        <right_flank>GATGTCATTTTCGTAAGATCTGATGACGTAGAAGCTTCCAATTCAAATTC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTCGAATATCCCTCTATTATTATCTTTTACTAATCATTTTTCCATCTTCCAGTGCCCCTCCATTCCTGCGTCTCGTCGAAAAGGACATCATCTCTCCGGCCTCCCCATCCAACACACTCTCCTCCTCCTCCACCACCCTCCTCTTCTCTCAACGCGGTGAGTAGGCGCCTCGCCGTTCTTATACGCCGTCCACCCCGCTCCTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATTTTTTGAAGAAACGCCATTAAATGAATATTCTGAAAAATTCAATTTTCAGCCAAATGTCCAACTGGCCAAGATGTCATTTTCGTAAGATCTGATGACGTAGAAGCTTCCAATTCAAATTCCAAATACGTGGAAATCACTGAAGACGACTGTGTCTTCGCCTGCCTCACAAATTCCCGTCCAGGGGGCGGAGCTTCGGATTGCTCAGCTTTAGAATACGATAAGACACGTGGATTTTGTTATTTGATGGGGAATATACCTAATGATGATATGGCAATGACACCAAGGCCAAGGAATCCGGTGAACAGTTATGAGAAGATTTGTATTCGGCGTAAGTTGGTATACTGTAGGTTTCAAACTACCGCATCTCGGTCAGTTTTGATCCATGTTTAACAATTTTTAAAATTTTGAACTTTGCACACGGAGTGCTTCAAAATGAATATAATCATGACCTACTTTCAAAATTTTCGGTTTTTCGATGGTCCATGCGCCTTTAAAGTCGATTTTCAAAAAAGCTCAAAATAGGTCGTGTTTAGGCTCATTTCAAAGCTCTCATTGCGTAAAAATCGAAA</canonical>
            <polymorphic>TTTTTTCGAATATCCCTCTATTATTATCTTTTACTAATCATTTTTCCATCTTCCAGTGCCCCTCCATTCCTGCGTCTCGTCGAAAAGGACATCATCTCTCCGGCCTCCCCATCCAACACACTCTCCTCCTCCTCCACCACCCTCCTCTTCTCTCAACGCGGTGAGTAGGCGCCTCGCCGTTCTTATACGCCGTCCACCCCGCTCCTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATTTTTTGAAGAAACGCCATTAAATGAATATTCTGAAAAATTCAATTTTCAGCCAAATGTCCAACTGGCCARGATGTCATTTTCGTAAGATCTGATGACGTAGAAGCTTCCAATTCAAATTCCAAATACGTGGAAATCACTGAAGACGACTGTGTCTTCGCCTGCCTCACAAATTCCCGTCCAGGGGGCGGAGCTTCGGATTGCTCAGCTTTAGAATACGATAAGACACGTGGATTTTGTTATTTGATGGGGAATATACCTAATGATGATATGGCAATGACACCAAGGCCAAGGAATCCGGTGAACAGTTATGAGAAGATTTGTATTCGGCGTAAGTTGGTATACTGTAGGTTTCAAACTACCGCATCTCGGTCAGTTTTGATCCATGTTTAACAATTTTTAAAATTTTGAACTTTGCACACGGAGTGCTTCAAAATGAATATAATCATGACCTACTTTCAAAATTTTCGGTTTTTCGATGGTCCATGCGCCTTTAAAGTCGATTTTCAAAAAAGCTCAAAATAGGTCGTGTTTAGGCTCATTTCAAAGCTCTCATTGCGTAAAAATCGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAACGCCATTAAATGAATA</pcr_primer_p1>
		<pcr_primer_p2>TATATTCCCCATCAAATAACAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAAACGCCATTAAATGAATATTCTGAAAAATTCAATTTTCAGCCAAATGTCCAACTGGCCAAGATGTCATTTTCGTAAGATCTGATGACGTAGAAGCTTCCAATTCAAATTCCAAATACGTGGAAATCACTGAAGACGACTGTGTCTTCGCCTGCCTCACAAATTCCCGTCCAGGGGGCGGAGCTTCGGATTGCTCAGCTTTAGAATACGATAAGACACGTGGATTTTGTTATTTGATGGGGAATATA</canonical_amplicon>
		<polymorphic_amplicon>AAGAAACGCCATTAAATGAATATTCTGAAAAATTCAATTTTCAGCCAAATGTCCAACTGGCCARGATGTCATTTTCGTAAGATCTGATGACGTAGAAGCTTCCAATTCAAATTCCAAATACGTGGAAATCACTGAAGACGACTGTGTCTTCGCCTGCCTCACAAATTCCCGTCCAGGGGGCGGAGCTTCGGATTGCTCAGCTTTAGAATACGATAAGACACGTGGATTTTGTTATTTGATGGGGAATATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb501</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>26276</contig_pos>
        <strand>+</strand>
        <context>AATTGAATKT[C/T]TTGAAGAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATTT</left_flank>
        <right_flank>TTGAAGAAACGCCATTAAATGAATATTCTGAAAAATTCAATTTTCAGCCA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATTTTCAGCCAAAACTAGAAAATACTGCTATATGCTTCATTTTCAACCGATTTCCATCTATTTTTTTTTTTCGAATATCCCTCTATTATTATCTTTTACTAATCATTTTTCCATCTTCCAGTGCCCCTCCATTCCTGCGTCTCGTCGAAAAGGACATCATCTCTCCGGCCTCCCCATCCAACACACTCTCCTCCTCCTCCACCACCCTCCTCTTCTCTCAACGCGGTGAGTAGGCGCCTCGCCGTTCTTATACGCCGTCCACCCCGCTCCTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATTTTTTGAAGAAACGCCATTAAATGAATATTCTGAAAAATTCAATTTTCAGCCAAATGTCCAACTGGCCAAGATGTCATTTTCGTAAGATCTGATGACGTAGAAGCTTCCAATTCAAATTCCAAATACGTGGAAATCACTGAAGACGACTGTGTCTTCGCCTGCCTCACAAATTCCCGTCCAGGGGGCGGAGCTTCGGATTGCTCAGCTTTAGAATACGATAAGACACGTGGATTTTGTTATTTGATGGGGAATATACCTAATGATGATATGGCAATGACACCAAGGCCAAGGAATCCGGTGAACAGTTATGAGAAGATTTGTATTCGGCGTAAGTTGGTATACTGTAGGTTTCAAACTACCGCATCTCGGTCAGTTTTGATCCATGTTTAACAATTTTTAAAATTTTGAACTTTGCACACGGAGTGCTTCAAAATGAATATAATCATGACCTACTTTCAAAATTTTCGGTTTTTCGATGGTCCATGCGCCTTTAAAGTCGATT</canonical>
            <polymorphic>CCATTTTCAGCCAAAACTAGAAAATACTGCTATATGCTTCATTTTCAACCGATTTCCATCTATTTTTTTTTTTCGAATATCCCTCTATTATTATCTTTTACTAATCATTTTTCCATCTTCCAGTGCCCCTCCATTCCTGCGTCTCGTCGAAAAGGACATCATCTCTCCGGCCTCCCCATCCAACACACTCTCCTCCTCCTCCACCACCCTCCTCTTCTCTCAACGCGGTGAGTAGGCGCCTCGCCGTTCTTATACGCCGTCCACCCCGCTCCTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATTTYTTGAAGAAACGCCATTAAATGAATATTCTGAAAAATTCAATTTTCAGCCAAATGTCCAACTGGCCAAGATGTCATTTTCGTAAGATCTGATGACGTAGAAGCTTCCAATTCAAATTCCAAATACGTGGAAATCACTGAAGACGACTGTGTCTTCGCCTGCCTCACAAATTCCCGTCCAGGGGGCGGAGCTTCGGATTGCTCAGCTTTAGAATACGATAAGACACGTGGATTTTGTTATTTGATGGGGAATATACCTAATGATGATATGGCAATGACACCAAGGCCAAGGAATCCGGTGAACAGTTATGAGAAGATTTGTATTCGGCGTAAGTTGGTATACTGTAGGTTTCAAACTACCGCATCTCGGTCAGTTTTGATCCATGTTTAACAATTTTTAAAATTTTGAACTTTGCACACGGAGTGCTTCAAAATGAATATAATCATGACCTACTTTCAAAATTTTCGGTTTTTCGATGGTCCATGCGCCTTTAAAGTCGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAATGTGTGGGGGTATAG</pcr_primer_p1>
		<pcr_primer_p2>ACATTTGGCTGAAAATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>CTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATTTTTTGAAGAAACGCCATTAAATGAATATTCTGAAAAATTCAATTTTCAGCCAAATGT</canonical_amplicon>
		<polymorphic_amplicon>CTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATTTYTTGAAGAAACGCCATTAAATGAATATTCTGAAAAATTCAATTTTCAGCCAAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb502</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>26274</contig_pos>
        <strand>+</strand>
        <context>TAAATTGAAT[G/T]TYTTGAAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAAT</left_flank>
        <right_flank>TTTTGAAGAAACGCCATTAAATGAATATTCTGAAAAATTCAATTTTCAGC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCCATTTTCAGCCAAAACTAGAAAATACTGCTATATGCTTCATTTTCAACCGATTTCCATCTATTTTTTTTTTTCGAATATCCCTCTATTATTATCTTTTACTAATCATTTTTCCATCTTCCAGTGCCCCTCCATTCCTGCGTCTCGTCGAAAAGGACATCATCTCTCCGGCCTCCCCATCCAACACACTCTCCTCCTCCTCCACCACCCTCCTCTTCTCTCAACGCGGTGAGTAGGCGCCTCGCCGTTCTTATACGCCGTCCACCCCGCTCCTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATTTTTTGAAGAAACGCCATTAAATGAATATTCTGAAAAATTCAATTTTCAGCCAAATGTCCAACTGGCCAAGATGTCATTTTCGTAAGATCTGATGACGTAGAAGCTTCCAATTCAAATTCCAAATACGTGGAAATCACTGAAGACGACTGTGTCTTCGCCTGCCTCACAAATTCCCGTCCAGGGGGCGGAGCTTCGGATTGCTCAGCTTTAGAATACGATAAGACACGTGGATTTTGTTATTTGATGGGGAATATACCTAATGATGATATGGCAATGACACCAAGGCCAAGGAATCCGGTGAACAGTTATGAGAAGATTTGTATTCGGCGTAAGTTGGTATACTGTAGGTTTCAAACTACCGCATCTCGGTCAGTTTTGATCCATGTTTAACAATTTTTAAAATTTTGAACTTTGCACACGGAGTGCTTCAAAATGAATATAATCATGACCTACTTTCAAAATTTTCGGTTTTTCGATGGTCCATGCGCCTTTAAAGTCGA</canonical>
            <polymorphic>AGCCATTTTCAGCCAAAACTAGAAAATACTGCTATATGCTTCATTTTCAACCGATTTCCATCTATTTTTTTTTTTCGAATATCCCTCTATTATTATCTTTTACTAATCATTTTTCCATCTTCCAGTGCCCCTCCATTCCTGCGTCTCGTCGAAAAGGACATCATCTCTCCGGCCTCCCCATCCAACACACTCTCCTCCTCCTCCACCACCCTCCTCTTCTCTCAACGCGGTGAGTAGGCGCCTCGCCGTTCTTATACGCCGTCCACCCCGCTCCTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATKTTTTGAAGAAACGCCATTAAATGAATATTCTGAAAAATTCAATTTTCAGCCAAATGTCCAACTGGCCAAGATGTCATTTTCGTAAGATCTGATGACGTAGAAGCTTCCAATTCAAATTCCAAATACGTGGAAATCACTGAAGACGACTGTGTCTTCGCCTGCCTCACAAATTCCCGTCCAGGGGGCGGAGCTTCGGATTGCTCAGCTTTAGAATACGATAAGACACGTGGATTTTGTTATTTGATGGGGAATATACCTAATGATGATATGGCAATGACACCAAGGCCAAGGAATCCGGTGAACAGTTATGAGAAGATTTGTATTCGGCGTAAGTTGGTATACTGTAGGTTTCAAACTACCGCATCTCGGTCAGTTTTGATCCATGTTTAACAATTTTTAAAATTTTGAACTTTGCACACGGAGTGCTTCAAAATGAATATAATCATGACCTACTTTCAAAATTTTCGGTTTTTCGATGGTCCATGCGCCTTTAAAGTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>496 232 79 59 54 41 39</canonical_bands>
                <polymorphic_bands>535 232 79 59 54 41</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>491 223 68 59 54 41 39 9 6 5 5</canonical_bands>
                <polymorphic_bands>491 223 68 59 54 44 41 9 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAATGTGTGGGGGTATAG</pcr_primer_p1>
		<pcr_primer_p2>ACATTTGGCTGAAAATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>CTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATTTTTTGAAGAAACGCCATTAAATGAATATTCTGAAAAATTCAATTTTCAGCCAAATGT</canonical_amplicon>
		<polymorphic_amplicon>CTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATKTTTTGAAGAAACGCCATTAAATGAATATTCTGAAAAATTCAATTTTCAGCCAAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb504</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>26177</contig_pos>
        <strand>+</strand>
        <context>GTTTAGATGA[C/T]CCGGAAGGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGA</left_flank>
        <right_flank>CCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAAATGTC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTGTTGGATTTTTTGCATTTTTCTTGTCTTATGAACTTAAAATTTGTATTTCACTGAAAATTCTAAATTTCTACTAAAGGTGTCTTAGATTTTCAGCCATTTTCAGCCAAAACTAGAAAATACTGCTATATGCTTCATTTTCAACCGATTTCCATCTATTTTTTTTTTTCGAATATCCCTCTATTATTATCTTTTACTAATCATTTTTCCATCTTCCAGTGCCCCTCCATTCCTGCGTCTCGTCGAAAAGGACATCATCTCTCCGGCCTCCCCATCCAACACACTCTCCTCCTCCTCCACCACCCTCCTCTTCTCTCAACGCGGTGAGTAGGCGCCTCGCCGTTCTTATACGCCGTCCACCCCGCTCCTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATTTTTTGAAGAAACGCCATTAAATGAATATTCTGAAAAATTCAATTTTCAGCCAAATGTCCAACTGGCCAAGATGTCATTTTCGTAAGATCTGATGACGTAGAAGCTTCCAATTCAAATTCCAAATACGTGGAAATCACTGAAGACGACTGTGTCTTCGCCTGCCTCACAAATTCCCGTCCAGGGGGCGGAGCTTCGGATTGCTCAGCTTTAGAATACGATAAGACACGTGGATTTTGTTATTTGATGGGGAATATACCTAATGATGATATGGCAATGACACCAAGGCCAAGGAATCCGGTGAACAGTTATGAGAAGATTTGTATTCGGCGTAAGTTGGTATACTGTAGGTTTCAAACTACCGCATCTCGGTCAGTTTTGATCCATGTTTAACAATTTTTAAAAT</canonical>
            <polymorphic>TTCTTGTTGGATTTTTTGCATTTTTCTTGTCTTATGAACTTAAAATTTGTATTTCACTGAAAATTCTAAATTTCTACTAAAGGTGTCTTAGATTTTCAGCCATTTTCAGCCAAAACTAGAAAATACTGCTATATGCTTCATTTTCAACCGATTTCCATCTATTTTTTTTTTTCGAATATCCCTCTATTATTATCTTTTACTAATCATTTTTCCATCTTCCAGTGCCCCTCCATTCCTGCGTCTCGTCGAAAAGGACATCATCTCTCCGGCCTCCCCATCCAACACACTCTCCTCCTCCTCCACCACCCTCCTCTTCTCTCAACGCGGTGAGTAGGCGCCTCGCCGTTCTTATACGCCGTCCACCCCGCTCCTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGAYCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATTTTTTGAAGAAACGCCATTAAATGAATATTCTGAAAAATTCAATTTTCAGCCAAATGTCCAACTGGCCAAGATGTCATTTTCGTAAGATCTGATGACGTAGAAGCTTCCAATTCAAATTCCAAATACGTGGAAATCACTGAAGACGACTGTGTCTTCGCCTGCCTCACAAATTCCCGTCCAGGGGGCGGAGCTTCGGATTGCTCAGCTTTAGAATACGATAAGACACGTGGATTTTGTTATTTGATGGGGAATATACCTAATGATGATATGGCAATGACACCAAGGCCAAGGAATCCGGTGAACAGTTATGAGAAGATTTGTATTCGGCGTAAGTTGGTATACTGTAGGTTTCAAACTACCGCATCTCGGTCAGTTTTGATCCATGTTTAACAATTTTTAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCCGGA</site>
                <isoschizomers>
                    <enzyme>AccIII</enzyme>
                    <enzyme>BseAI</enzyme>
                    <enzyme>BsiMI</enzyme>
                    <enzyme>Bsp13I</enzyme>
                    <enzyme>BspEI</enzyme>
                    <enzyme>BspMII</enzyme>
                    <enzyme>Kpn2I</enzyme>
                    <enzyme>MroI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>500 391 109</canonical_bands>
                <polymorphic_bands>891 109</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>415 292 185 82 26</canonical_bands>
                <polymorphic_bands>415 292 267 26</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>499 419 82</canonical_bands>
                <polymorphic_bands>581 419</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAATGTGTGGGGGTATAG</pcr_primer_p1>
		<pcr_primer_p2>ATATTCATTTAATGGCGTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATTTTTTGAAGAAACGCCATTAAATGAATAT</canonical_amplicon>
		<polymorphic_amplicon>CTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGAYCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATTTTTTGAAGAAACGCCATTAAATGAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb505</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>26152</contig_pos>
        <strand></strand>
        <context>CTTTTTTGTA[G/A]ACCTTTTTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTA</left_flank>
        <right_flank>ACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTAGTTAGGCTTAAAATCGAGATTTTCTTGTTGGATTTTTTGCATTTTTCTTGTCTTATGAACTTAAAATTTGTATTTCACTGAAAATTCTAAATTTCTACTAAAGGTGTCTTAGATTTTCAGCCATTTTCAGCCAAAACTAGAAAATACTGCTATATGCTTCATTTTCAACCGATTTCCATCTATTTTTTTTTTTCGAATATCCCTCTATTATTATCTTTTACTAATCATTTTTCCATCTTCCAGTGCCCCTCCATTCCTGCGTCTCGTCGAAAAGGACATCATCTCTCCGGCCTCCCCATCCAACACACTCTCCTCCTCCTCCACCACCCTCCTCTTCTCTCAACGCGGTGAGTAGGCGCCTCGCCGTTCTTATACGCCGTCCACCCCGCTCCTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATTTTTTGAAGAAACGCCATTAAATGAATATTCTGAAAAATTCAATTTTCAGCCAAATGTCCAACTGGCCAAGATGTCATTTTCGTAAGATCTGATGACGTAGAAGCTTCCAATTCAAATTCCAAATACGTGGAAATCACTGAAGACGACTGTGTCTTCGCCTGCCTCACAAATTCCCGTCCAGGGGGCGGAGCTTCGGATTGCTCAGCTTTAGAATACGATAAGACACGTGGATTTTGTTATTTGATGGGGAATATACCTAATGATGATATGGCAATGACACCAAGGCCAAGGAATCCGGTGAACAGTTATGAGAAGATTTGTATTCGGCGTAAGTTGGTATACTGTAGGTTTCAAACTACCGCATCTCGGTCAGTTTTG</canonical>
            <polymorphic>CGTAGTTAGGCTTAAAATCGAGATTTTCTTGTTGGATTTTTTGCATTTTTCTTGTCTTATGAACTTAAAATTTGTATTTCACTGAAAATTCTAAATTTCTACTAAAGGTGTCTTAGATTTTCAGCCATTTTCAGCCAAAACTAGAAAATACTGCTATATGCTTCATTTTCAACCGATTTCCATCTATTTTTTTTTTTCGAATATCCCTCTATTATTATCTTTTACTAATCATTTTTCCATCTTCCAGTGCCCCTCCATTCCTGCGTCTCGTCGAAAAGGACATCATCTCTCCGGCCTCCCCATCCAACACACTCTCCTCCTCCTCCACCACCCTCCTCTTCTCTCAACGCGGTGAGTAGGCGCCTCGCCGTTCTTATACGCCGTCCACCCCGCTCCTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTARACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATTTTTTGAAGAAACGCCATTAAATGAATATTCTGAAAAATTCAATTTTCAGCCAAATGTCCAACTGGCCAAGATGTCATTTTCGTAAGATCTGATGACGTAGAAGCTTCCAATTCAAATTCCAAATACGTGGAAATCACTGAAGACGACTGTGTCTTCGCCTGCCTCACAAATTCCCGTCCAGGGGGCGGAGCTTCGGATTGCTCAGCTTTAGAATACGATAAGACACGTGGATTTTGTTATTTGATGGGGAATATACCTAATGATGATATGGCAATGACACCAAGGCCAAGGAATCCGGTGAACAGTTATGAGAAGATTTGTATTCGGCGTAAGTTGGTATACTGTAGGTTTCAAACTACCGCATCTCGGTCAGTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>498 462 40</canonical_bands>
                <polymorphic_bands>960 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAATGTGTGGGGGTATAG</pcr_primer_p1>
		<pcr_primer_p2>ATATTCATTTAATGGCGTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATTTTTTGAAGAAACGCCATTAAATGAATAT</canonical_amplicon>
		<polymorphic_amplicon>CTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTARACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATTTTTTGAAGAAACGCCATTAAATGAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb506</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>49914</contig_pos>
        <strand>+</strand>
        <context>CATGGTTCTA[A/G]RGTAGAAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGATTTGGCCGATTTTTGAGTCAAAATCTTCACAATAACCATGGTTCTA</left_flank>
        <right_flank>AGTAGAAAACCCTGAATTTTCGCATTTTTAGCATAAAAATCAGATTTTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTGTTTTTAGACGCTTTTGGGGGAGAAGAAACGGAAAAACGACATTTTTGGGACAAAAAAACATGCAATCTGAACGTTTTGGGGTCAAAAAACTCACTTTCTACTTGTAATCCCAATTTTTTAGACCTGAAAATCGGATTTTTTGGGAAATTTTGAAATTAGACGATTTTCAGAGTGAAAATCCCTGATTTTTCGCATTTTTAGCATGAAAATCGCATATTTTCAGCTCGAAAACCTCTGAAAACATCATTTTCAAGCCAAAAATGGCGAAATTCAAAATTATTGAATTCAGACGATTTTAGAGTCAAAATGTTCACAAAAACCAATTTTTGGGGTAAAATCCCAAATTGTTCGCATTTTTAGCATAAAAATCGCATATTTTCAGCTCGAAAACCTCTAAAAACATAATTTTCAAACAAACCAAAAAATGACCAAAATCGAAGTTTTAGGATTTGGCCGATTTTTGAGTCAAAATCTTCACAATAACCATGGTTCTAAAGTAGAAAACCCTGAATTTTCGCATTTTTAGCATAAAAATCAGATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGCTCTCGCCACCAACCGACATCTCGCCGCCGCCCAGCTAGATTTTTTCGCTGTTTTTTTCCGGATTTTTCGCTTTATTCTTAGATTTTAAATCAATAAATTCGAATTCCTCACCTTACTGAGTCTTACAATGAGCACAACCTTGACACCTTCCGTGCTCAGACCAAGTTTTTTCAGCTCGCTCTGAAAAAATGATCTTTTAGGCACGACAAATTCGATTTTTAGCCCGAAATCCTCACTTTTAACGCTGGCACAGTCAAATTCTCAACTTGTGTCCCGTTCAGCAGTGGCATATAAGAGATTGAAGAACCGCTGAAAAAAAATTATCTGAATTTTCCAGGTTTTTGATGGGTTCCAGGTGACGGACGGCGGTCTTCAAACACAAAAAATTCGAAATCCACGACCTAGAAAACGTGGAA</canonical>
            <polymorphic>GTGTGTTTTTAGACGCTTTTGGGGGAGAAGAAACGGAAAAACGACATTTTTGGGACAAAAAAACATGCAATCTGAACGTTTTGGGGTCAAAAAACTCACTTTCTACTTGTAATCCCAATTTTTTAGACCTGAAAATCGGATTTTTTGGGAAATTTTGAAATTAGACGATTTTCAGAGTGAAAATCCCTGATTTTTCGCATTTTTAGCATGAAAATCGCATATTTTCAGCTCGAAAACCTCTGAAAACATCATTTTCAAGCCAAAAATGGCGAAATTCAAAATTATTGAATTCAGACGATTTTAGAGTCAAAATGTTCACAAAAACCAATTTTTGGGGTAAAATCCCAAATTGTTCGCATTTTTAGCATAAAAATCGCATATTTTCAGCTCGAAAACCTCTAAAAACATAATTTTCAAACAAACCAAAAAATGACCAAAATCGAAGTTTTAGGATTTGGCCGATTTTTGAGTCAAAATCTTCACAATAACCATGGTTCTARAGTAGAAAACCCTGAATTTTCGCATTTTTAGCATAAAAATCAGATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGCTCTCGCCACCAACCGACATCTCGCCGCCGCCCAGCTAGATTTTTTCGCTGTTTTTTTCCGGATTTTTCGCTTTATTCTTAGATTTTAAATCAATAAATTCGAATTCCTCACCTTACTGAGTCTTACAATGAGCACAACCTTGACACCTTCCGTGCTCAGACCAAGTTTTTTCAGCTCGCTCTGAAAAAATGATCTTTTAGGCACGACAAATTCGATTTTTAGCCCGAAATCCTCACTTTTAACGCTGGCACAGTCAAATTCTCAACTTGTGTCCCGTTCAGCAGTGGCATATAAGAGATTGAAGAACCGCTGAAAAAAAATTATCTGAATTTTCCAGGTTTTTGATGGGTTCCAGGTGACGGACGGCGGTCTTCAAACACAAAAAATTCGAAATCCACGACCTAGAAAACGTGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGTAAAATCCCAAATTGTT</pcr_primer_p1>
		<pcr_primer_p2>GCTGAAAATATGGAAAATAGTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGGTAAAATCCCAAATTGTTCGCATTTTTAGCATAAAAATCGCATATTTTCAGCTCGAAAACCTCTAAAAACATAATTTTCAAACAAACCAAAAAATGACCAAAATCGAAGTTTTAGGATTTGGCCGATTTTTGAGTCAAAATCTTCACAATAACCATGGTTCTAAAGTAGAAAACCCTGAATTTTCGCATTTTTAGCATAAAAATCAGATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGC</canonical_amplicon>
		<polymorphic_amplicon>GGGTAAAATCCCAAATTGTTCGCATTTTTAGCATAAAAATCGCATATTTTCAGCTCGAAAACCTCTAAAAACATAATTTTCAAACAAACCAAAAAATGACCAAAATCGAAGTTTTAGGATTTGGCCGATTTTTGAGTCAAAATCTTCACAATAACCATGGTTCTARAGTAGAAAACCCTGAATTTTCGCATTTTTAGCATAAAAATCAGATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb507</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>49915</contig_pos>
        <strand>+</strand>
        <context>ATGGTTCTAR[A/G]GTAGAAAACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGATTTGGCCGATTTTTGAGTCAAAATCTTCACAATAACCATGGTTCTAA</left_flank>
        <right_flank>GTAGAAAACCCTGAATTTTCGCATTTTTAGCATAAAAATCAGATTTTGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGTTTTTAGACGCTTTTGGGGGAGAAGAAACGGAAAAACGACATTTTTGGGACAAAAAAACATGCAATCTGAACGTTTTGGGGTCAAAAAACTCACTTTCTACTTGTAATCCCAATTTTTTAGACCTGAAAATCGGATTTTTTGGGAAATTTTGAAATTAGACGATTTTCAGAGTGAAAATCCCTGATTTTTCGCATTTTTAGCATGAAAATCGCATATTTTCAGCTCGAAAACCTCTGAAAACATCATTTTCAAGCCAAAAATGGCGAAATTCAAAATTATTGAATTCAGACGATTTTAGAGTCAAAATGTTCACAAAAACCAATTTTTGGGGTAAAATCCCAAATTGTTCGCATTTTTAGCATAAAAATCGCATATTTTCAGCTCGAAAACCTCTAAAAACATAATTTTCAAACAAACCAAAAAATGACCAAAATCGAAGTTTTAGGATTTGGCCGATTTTTGAGTCAAAATCTTCACAATAACCATGGTTCTAAAGTAGAAAACCCTGAATTTTCGCATTTTTAGCATAAAAATCAGATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGCTCTCGCCACCAACCGACATCTCGCCGCCGCCCAGCTAGATTTTTTCGCTGTTTTTTTCCGGATTTTTCGCTTTATTCTTAGATTTTAAATCAATAAATTCGAATTCCTCACCTTACTGAGTCTTACAATGAGCACAACCTTGACACCTTCCGTGCTCAGACCAAGTTTTTTCAGCTCGCTCTGAAAAAATGATCTTTTAGGCACGACAAATTCGATTTTTAGCCCGAAATCCTCACTTTTAACGCTGGCACAGTCAAATTCTCAACTTGTGTCCCGTTCAGCAGTGGCATATAAGAGATTGAAGAACCGCTGAAAAAAAATTATCTGAATTTTCCAGGTTTTTGATGGGTTCCAGGTGACGGACGGCGGTCTTCAAACACAAAAAATTCGAAATCCACGACCTAGAAAACGTGGAAA</canonical>
            <polymorphic>TGTGTTTTTAGACGCTTTTGGGGGAGAAGAAACGGAAAAACGACATTTTTGGGACAAAAAAACATGCAATCTGAACGTTTTGGGGTCAAAAAACTCACTTTCTACTTGTAATCCCAATTTTTTAGACCTGAAAATCGGATTTTTTGGGAAATTTTGAAATTAGACGATTTTCAGAGTGAAAATCCCTGATTTTTCGCATTTTTAGCATGAAAATCGCATATTTTCAGCTCGAAAACCTCTGAAAACATCATTTTCAAGCCAAAAATGGCGAAATTCAAAATTATTGAATTCAGACGATTTTAGAGTCAAAATGTTCACAAAAACCAATTTTTGGGGTAAAATCCCAAATTGTTCGCATTTTTAGCATAAAAATCGCATATTTTCAGCTCGAAAACCTCTAAAAACATAATTTTCAAACAAACCAAAAAATGACCAAAATCGAAGTTTTAGGATTTGGCCGATTTTTGAGTCAAAATCTTCACAATAACCATGGTTCTAARGTAGAAAACCCTGAATTTTCGCATTTTTAGCATAAAAATCAGATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGCTCTCGCCACCAACCGACATCTCGCCGCCGCCCAGCTAGATTTTTTCGCTGTTTTTTTCCGGATTTTTCGCTTTATTCTTAGATTTTAAATCAATAAATTCGAATTCCTCACCTTACTGAGTCTTACAATGAGCACAACCTTGACACCTTCCGTGCTCAGACCAAGTTTTTTCAGCTCGCTCTGAAAAAATGATCTTTTAGGCACGACAAATTCGATTTTTAGCCCGAAATCCTCACTTTTAACGCTGGCACAGTCAAATTCTCAACTTGTGTCCCGTTCAGCAGTGGCATATAAGAGATTGAAGAACCGCTGAAAAAAAATTATCTGAATTTTCCAGGTTTTTGATGGGTTCCAGGTGACGGACGGCGGTCTTCAAACACAAAAAATTCGAAATCCACGACCTAGAAAACGTGGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGTAAAATCCCAAATTGTT</pcr_primer_p1>
		<pcr_primer_p2>GCTGAAAATATGGAAAATAGTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGGTAAAATCCCAAATTGTTCGCATTTTTAGCATAAAAATCGCATATTTTCAGCTCGAAAACCTCTAAAAACATAATTTTCAAACAAACCAAAAAATGACCAAAATCGAAGTTTTAGGATTTGGCCGATTTTTGAGTCAAAATCTTCACAATAACCATGGTTCTAAAGTAGAAAACCCTGAATTTTCGCATTTTTAGCATAAAAATCAGATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGC</canonical_amplicon>
		<polymorphic_amplicon>GGGTAAAATCCCAAATTGTTCGCATTTTTAGCATAAAAATCGCATATTTTCAGCTCGAAAACCTCTAAAAACATAATTTTCAAACAAACCAAAAAATGACCAAAATCGAAGTTTTAGGATTTGGCCGATTTTTGAGTCAAAATCTTCACAATAACCATGGTTCTAARGTAGAAAACCCTGAATTTTCGCATTTTTAGCATAAAAATCAGATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb508</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>49930</contig_pos>
        <strand>+</strand>
        <context>AAAACCCTGA[A/T]TTTTCGCATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGAGTCAAAATCTTCACAATAACCATGGTTCTAAAGTAGAAAACCCTGA</left_flank>
        <right_flank>TTTTCGCATTTTTAGCATAAAAATCAGATTTTGAAAGCTCTAAAATCACT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGGGGGAGAAGAAACGGAAAAACGACATTTTTGGGACAAAAAAACATGCAATCTGAACGTTTTGGGGTCAAAAAACTCACTTTCTACTTGTAATCCCAATTTTTTAGACCTGAAAATCGGATTTTTTGGGAAATTTTGAAATTAGACGATTTTCAGAGTGAAAATCCCTGATTTTTCGCATTTTTAGCATGAAAATCGCATATTTTCAGCTCGAAAACCTCTGAAAACATCATTTTCAAGCCAAAAATGGCGAAATTCAAAATTATTGAATTCAGACGATTTTAGAGTCAAAATGTTCACAAAAACCAATTTTTGGGGTAAAATCCCAAATTGTTCGCATTTTTAGCATAAAAATCGCATATTTTCAGCTCGAAAACCTCTAAAAACATAATTTTCAAACAAACCAAAAAATGACCAAAATCGAAGTTTTAGGATTTGGCCGATTTTTGAGTCAAAATCTTCACAATAACCATGGTTCTAAAGTAGAAAACCCTGAATTTTCGCATTTTTAGCATAAAAATCAGATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGCTCTCGCCACCAACCGACATCTCGCCGCCGCCCAGCTAGATTTTTTCGCTGTTTTTTTCCGGATTTTTCGCTTTATTCTTAGATTTTAAATCAATAAATTCGAATTCCTCACCTTACTGAGTCTTACAATGAGCACAACCTTGACACCTTCCGTGCTCAGACCAAGTTTTTTCAGCTCGCTCTGAAAAAATGATCTTTTAGGCACGACAAATTCGATTTTTAGCCCGAAATCCTCACTTTTAACGCTGGCACAGTCAAATTCTCAACTTGTGTCCCGTTCAGCAGTGGCATATAAGAGATTGAAGAACCGCTGAAAAAAAATTATCTGAATTTTCCAGGTTTTTGATGGGTTCCAGGTGACGGACGGCGGTCTTCAAACACAAAAAATTCGAAATCCACGACCTAGAAAACGTGGAAAGTGCGAAAAAAAGGC</canonical>
            <polymorphic>TTTTGGGGGAGAAGAAACGGAAAAACGACATTTTTGGGACAAAAAAACATGCAATCTGAACGTTTTGGGGTCAAAAAACTCACTTTCTACTTGTAATCCCAATTTTTTAGACCTGAAAATCGGATTTTTTGGGAAATTTTGAAATTAGACGATTTTCAGAGTGAAAATCCCTGATTTTTCGCATTTTTAGCATGAAAATCGCATATTTTCAGCTCGAAAACCTCTGAAAACATCATTTTCAAGCCAAAAATGGCGAAATTCAAAATTATTGAATTCAGACGATTTTAGAGTCAAAATGTTCACAAAAACCAATTTTTGGGGTAAAATCCCAAATTGTTCGCATTTTTAGCATAAAAATCGCATATTTTCAGCTCGAAAACCTCTAAAAACATAATTTTCAAACAAACCAAAAAATGACCAAAATCGAAGTTTTAGGATTTGGCCGATTTTTGAGTCAAAATCTTCACAATAACCATGGTTCTAAAGTAGAAAACCCTGAWTTTTCGCATTTTTAGCATAAAAATCAGATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGCTCTCGCCACCAACCGACATCTCGCCGCCGCCCAGCTAGATTTTTTCGCTGTTTTTTTCCGGATTTTTCGCTTTATTCTTAGATTTTAAATCAATAAATTCGAATTCCTCACCTTACTGAGTCTTACAATGAGCACAACCTTGACACCTTCCGTGCTCAGACCAAGTTTTTTCAGCTCGCTCTGAAAAAATGATCTTTTAGGCACGACAAATTCGATTTTTAGCCCGAAATCCTCACTTTTAACGCTGGCACAGTCAAATTCTCAACTTGTGTCCCGTTCAGCAGTGGCATATAAGAGATTGAAGAACCGCTGAAAAAAAATTATCTGAATTTTCCAGGTTTTTGATGGGTTCCAGGTGACGGACGGCGGTCTTCAAACACAAAAAATTCGAAATCCACGACCTAGAAAACGTGGAAAGTGCGAAAAAAAGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>227 165 134 122 107 71 57 48 48 15 6</canonical_bands>
                <polymorphic_bands>392 134 122 107 71 57 48 48 15 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>165 114 107 106 100 62 61 57 48 48 39 34 21 9 8 8 7 6</canonical_bands>
                <polymorphic_bands>271 114 107 100 62 61 57 48 48 39 34 21 9 8 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGTAAAATCCCAAATTGTT</pcr_primer_p1>
		<pcr_primer_p2>GCTGAAAATATGGAAAATAGTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGGTAAAATCCCAAATTGTTCGCATTTTTAGCATAAAAATCGCATATTTTCAGCTCGAAAACCTCTAAAAACATAATTTTCAAACAAACCAAAAAATGACCAAAATCGAAGTTTTAGGATTTGGCCGATTTTTGAGTCAAAATCTTCACAATAACCATGGTTCTAAAGTAGAAAACCCTGAATTTTCGCATTTTTAGCATAAAAATCAGATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGC</canonical_amplicon>
		<polymorphic_amplicon>GGGTAAAATCCCAAATTGTTCGCATTTTTAGCATAAAAATCGCATATTTTCAGCTCGAAAACCTCTAAAAACATAATTTTCAAACAAACCAAAAAATGACCAAAATCGAAGTTTTAGGATTTGGCCGATTTTTGAGTCAAAATCTTCACAATAACCATGGTTCTAAAGTAGAAAACCCTGAWTTTTCGCATTTTTAGCATAAAAATCAGATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb509</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>49957</contig_pos>
        <strand>+</strand>
        <context>ATAAAAATCA[G/T]ATTTTGAAAR</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGTTCTAAAGTAGAAAACCCTGAATTTTCGCATTTTTAGCATAAAAATCA</left_flank>
        <right_flank>ATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGCTCTCGCCAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATTTTTGGGACAAAAAAACATGCAATCTGAACGTTTTGGGGTCAAAAAACTCACTTTCTACTTGTAATCCCAATTTTTTAGACCTGAAAATCGGATTTTTTGGGAAATTTTGAAATTAGACGATTTTCAGAGTGAAAATCCCTGATTTTTCGCATTTTTAGCATGAAAATCGCATATTTTCAGCTCGAAAACCTCTGAAAACATCATTTTCAAGCCAAAAATGGCGAAATTCAAAATTATTGAATTCAGACGATTTTAGAGTCAAAATGTTCACAAAAACCAATTTTTGGGGTAAAATCCCAAATTGTTCGCATTTTTAGCATAAAAATCGCATATTTTCAGCTCGAAAACCTCTAAAAACATAATTTTCAAACAAACCAAAAAATGACCAAAATCGAAGTTTTAGGATTTGGCCGATTTTTGAGTCAAAATCTTCACAATAACCATGGTTCTAAAGTAGAAAACCCTGAATTTTCGCATTTTTAGCATAAAAATCAGATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGCTCTCGCCACCAACCGACATCTCGCCGCCGCCCAGCTAGATTTTTTCGCTGTTTTTTTCCGGATTTTTCGCTTTATTCTTAGATTTTAAATCAATAAATTCGAATTCCTCACCTTACTGAGTCTTACAATGAGCACAACCTTGACACCTTCCGTGCTCAGACCAAGTTTTTTCAGCTCGCTCTGAAAAAATGATCTTTTAGGCACGACAAATTCGATTTTTAGCCCGAAATCCTCACTTTTAACGCTGGCACAGTCAAATTCTCAACTTGTGTCCCGTTCAGCAGTGGCATATAAGAGATTGAAGAACCGCTGAAAAAAAATTATCTGAATTTTCCAGGTTTTTGATGGGTTCCAGGTGACGGACGGCGGTCTTCAAACACAAAAAATTCGAAATCCACGACCTAGAAAACGTGGAAAGTGCGAAAAAAAGGCTGGAATCCATGGAAATCGAGGGATAAA</canonical>
            <polymorphic>ACATTTTTGGGACAAAAAAACATGCAATCTGAACGTTTTGGGGTCAAAAAACTCACTTTCTACTTGTAATCCCAATTTTTTAGACCTGAAAATCGGATTTTTTGGGAAATTTTGAAATTAGACGATTTTCAGAGTGAAAATCCCTGATTTTTCGCATTTTTAGCATGAAAATCGCATATTTTCAGCTCGAAAACCTCTGAAAACATCATTTTCAAGCCAAAAATGGCGAAATTCAAAATTATTGAATTCAGACGATTTTAGAGTCAAAATGTTCACAAAAACCAATTTTTGGGGTAAAATCCCAAATTGTTCGCATTTTTAGCATAAAAATCGCATATTTTCAGCTCGAAAACCTCTAAAAACATAATTTTCAAACAAACCAAAAAATGACCAAAATCGAAGTTTTAGGATTTGGCCGATTTTTGAGTCAAAATCTTCACAATAACCATGGTTCTAAAGTAGAAAACCCTGAATTTTCGCATTTTTAGCATAAAAATCAKATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGCTCTCGCCACCAACCGACATCTCGCCGCCGCCCAGCTAGATTTTTTCGCTGTTTTTTTCCGGATTTTTCGCTTTATTCTTAGATTTTAAATCAATAAATTCGAATTCCTCACCTTACTGAGTCTTACAATGAGCACAACCTTGACACCTTCCGTGCTCAGACCAAGTTTTTTCAGCTCGCTCTGAAAAAATGATCTTTTAGGCACGACAAATTCGATTTTTAGCCCGAAATCCTCACTTTTAACGCTGGCACAGTCAAATTCTCAACTTGTGTCCCGTTCAGCAGTGGCATATAAGAGATTGAAGAACCGCTGAAAAAAAATTATCTGAATTTTCCAGGTTTTTGATGGGTTCCAGGTGACGGACGGCGGTCTTCAAACACAAAAAATTCGAAATCCACGACCTAGAAAACGTGGAAAGTGCGAAAAAAAGGCTGGAATCCATGGAAATCGAGGGATAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>249 200 144 133 67 65 52 36 30 24</canonical_bands>
                <polymorphic_bands>449 144 133 67 65 52 36 30 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTCAAAATCTTCACAATAACC</pcr_primer_p1>
		<pcr_primer_p2>GCTCATTGTAAGACTCAGTAAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGTCAAAATCTTCACAATAACCATGGTTCTAAAGTAGAAAACCCTGAATTTTCGCATTTTTAGCATAAAAATCAGATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGCTCTCGCCACCAACCGACATCTCGCCGCCGCCCAGCTAGATTTTTTCGCTGTTTTTTTCCGGATTTTTCGCTTTATTCTTAGATTTTAAATCAATAAATTCGAATTCCTCACCTTACTGAGTCTTACAATGAGC</canonical_amplicon>
		<polymorphic_amplicon>GAGTCAAAATCTTCACAATAACCATGGTTCTAAAGTAGAAAACCCTGAATTTTCGCATTTTTAGCATAAAAATCAKATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGCTCTCGCCACCAACCGACATCTCGCCGCCGCCCAGCTAGATTTTTTCGCTGTTTTTTTCCGGATTTTTCGCTTTATTCTTAGATTTTAAATCAATAAATTCGAATTCCTCACCTTACTGAGTCTTACAATGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb510</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>49967</contig_pos>
        <strand>+</strand>
        <context>KATTTTGAAA[A/G]CTCTAAAATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGAAAACCCTGAATTTTCGCATTTTTAGCATAAAAATCAGATTTTGAAA</left_flank>
        <right_flank>CTCTAAAATCACTATTTTCCATATTTTCAGCTCTCGCCACCAACCGACAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACAAAAAAACATGCAATCTGAACGTTTTGGGGTCAAAAAACTCACTTTCTACTTGTAATCCCAATTTTTTAGACCTGAAAATCGGATTTTTTGGGAAATTTTGAAATTAGACGATTTTCAGAGTGAAAATCCCTGATTTTTCGCATTTTTAGCATGAAAATCGCATATTTTCAGCTCGAAAACCTCTGAAAACATCATTTTCAAGCCAAAAATGGCGAAATTCAAAATTATTGAATTCAGACGATTTTAGAGTCAAAATGTTCACAAAAACCAATTTTTGGGGTAAAATCCCAAATTGTTCGCATTTTTAGCATAAAAATCGCATATTTTCAGCTCGAAAACCTCTAAAAACATAATTTTCAAACAAACCAAAAAATGACCAAAATCGAAGTTTTAGGATTTGGCCGATTTTTGAGTCAAAATCTTCACAATAACCATGGTTCTAAAGTAGAAAACCCTGAATTTTCGCATTTTTAGCATAAAAATCAGATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGCTCTCGCCACCAACCGACATCTCGCCGCCGCCCAGCTAGATTTTTTCGCTGTTTTTTTCCGGATTTTTCGCTTTATTCTTAGATTTTAAATCAATAAATTCGAATTCCTCACCTTACTGAGTCTTACAATGAGCACAACCTTGACACCTTCCGTGCTCAGACCAAGTTTTTTCAGCTCGCTCTGAAAAAATGATCTTTTAGGCACGACAAATTCGATTTTTAGCCCGAAATCCTCACTTTTAACGCTGGCACAGTCAAATTCTCAACTTGTGTCCCGTTCAGCAGTGGCATATAAGAGATTGAAGAACCGCTGAAAAAAAATTATCTGAATTTTCCAGGTTTTTGATGGGTTCCAGGTGACGGACGGCGGTCTTCAAACACAAAAAATTCGAAATCCACGACCTAGAAAACGTGGAAAGTGCGAAAAAAAGGCTGGAATCCATGGAAATCGAGGGATAAAATGAGTTGGA</canonical>
            <polymorphic>GACAAAAAAACATGCAATCTGAACGTTTTGGGGTCAAAAAACTCACTTTCTACTTGTAATCCCAATTTTTTAGACCTGAAAATCGGATTTTTTGGGAAATTTTGAAATTAGACGATTTTCAGAGTGAAAATCCCTGATTTTTCGCATTTTTAGCATGAAAATCGCATATTTTCAGCTCGAAAACCTCTGAAAACATCATTTTCAAGCCAAAAATGGCGAAATTCAAAATTATTGAATTCAGACGATTTTAGAGTCAAAATGTTCACAAAAACCAATTTTTGGGGTAAAATCCCAAATTGTTCGCATTTTTAGCATAAAAATCGCATATTTTCAGCTCGAAAACCTCTAAAAACATAATTTTCAAACAAACCAAAAAATGACCAAAATCGAAGTTTTAGGATTTGGCCGATTTTTGAGTCAAAATCTTCACAATAACCATGGTTCTAAAGTAGAAAACCCTGAATTTTCGCATTTTTAGCATAAAAATCAGATTTTGAAARCTCTAAAATCACTATTTTCCATATTTTCAGCTCTCGCCACCAACCGACATCTCGCCGCCGCCCAGCTAGATTTTTTCGCTGTTTTTTTCCGGATTTTTCGCTTTATTCTTAGATTTTAAATCAATAAATTCGAATTCCTCACCTTACTGAGTCTTACAATGAGCACAACCTTGACACCTTCCGTGCTCAGACCAAGTTTTTTCAGCTCGCTCTGAAAAAATGATCTTTTAGGCACGACAAATTCGATTTTTAGCCCGAAATCCTCACTTTTAACGCTGGCACAGTCAAATTCTCAACTTGTGTCCCGTTCAGCAGTGGCATATAAGAGATTGAAGAACCGCTGAAAAAAAATTATCTGAATTTTCCAGGTTTTTGATGGGTTCCAGGTGACGGACGGCGGTCTTCAAACACAAAAAATTCGAAATCCACGACCTAGAAAACGTGGAAAGTGCGAAAAAAAGGCTGGAATCCATGGAAATCGAGGGATAAAATGAGTTGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>295 175 166 159 140 35 30</canonical_bands>
                <polymorphic_bands>295 196 175 159 140 35</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>209 175 140 128 95 71 48 38 35 31 30</canonical_bands>
                <polymorphic_bands>209 175 140 128 125 71 48 38 35 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTCAAAATCTTCACAATAACC</pcr_primer_p1>
		<pcr_primer_p2>GCTCATTGTAAGACTCAGTAAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGTCAAAATCTTCACAATAACCATGGTTCTAAAGTAGAAAACCCTGAATTTTCGCATTTTTAGCATAAAAATCAGATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGCTCTCGCCACCAACCGACATCTCGCCGCCGCCCAGCTAGATTTTTTCGCTGTTTTTTTCCGGATTTTTCGCTTTATTCTTAGATTTTAAATCAATAAATTCGAATTCCTCACCTTACTGAGTCTTACAATGAGC</canonical_amplicon>
		<polymorphic_amplicon>GAGTCAAAATCTTCACAATAACCATGGTTCTAAAGTAGAAAACCCTGAATTTTCGCATTTTTAGCATAAAAATCAGATTTTGAAARCTCTAAAATCACTATTTTCCATATTTTCAGCTCTCGCCACCAACCGACATCTCGCCGCCGCCCAGCTAGATTTTTTCGCTGTTTTTTTCCGGATTTTTCGCTTTATTCTTAGATTTTAAATCAATAAATTCGAATTCCTCACCTTACTGAGTCTTACAATGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb511</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>50082</contig_pos>
        <strand>+</strand>
        <context>ATTCTTAGAT[C/T]TTAAATCAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTAGATTTTTTCGCTGTTTTTTTCCGGATTTTTCGCTTTATTCTTAGAT</left_flank>
        <right_flank>TTAAATCAATAAATTCGAATTCCTCACCTTACTGAGTCTTACAATGAGCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCAGAGTGAAAATCCCTGATTTTTCGCATTTTTAGCATGAAAATCGCATATTTTCAGCTCGAAAACCTCTGAAAACATCATTTTCAAGCCAAAAATGGCGAAATTCAAAATTATTGAATTCAGACGATTTTAGAGTCAAAATGTTCACAAAAACCAATTTTTGGGGTAAAATCCCAAATTGTTCGCATTTTTAGCATAAAAATCGCATATTTTCAGCTCGAAAACCTCTAAAAACATAATTTTCAAACAAACCAAAAAATGACCAAAATCGAAGTTTTAGGATTTGGCCGATTTTTGAGTCAAAATCTTCACAATAACCATGGTTCTAAAGTAGAAAACCCTGAATTTTCGCATTTTTAGCATAAAAATCAGATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGCTCTCGCCACCAACCGACATCTCGCCGCCGCCCAGCTAGATTTTTTCGCTGTTTTTTTCCGGATTTTTCGCTTTATTCTTAGATTTTAAATCAATAAATTCGAATTCCTCACCTTACTGAGTCTTACAATGAGCACAACCTTGACACCTTCCGTGCTCAGACCAAGTTTTTTCAGCTCGCTCTGAAAAAATGATCTTTTAGGCACGACAAATTCGATTTTTAGCCCGAAATCCTCACTTTTAACGCTGGCACAGTCAAATTCTCAACTTGTGTCCCGTTCAGCAGTGGCATATAAGAGATTGAAGAACCGCTGAAAAAAAATTATCTGAATTTTCCAGGTTTTTGATGGGTTCCAGGTGACGGACGGCGGTCTTCAAACACAAAAAATTCGAAATCCACGACCTAGAAAACGTGGAAAGTGCGAAAAAAAGGCTGGAATCCATGGAAATCGAGGGATAAAATGAGTTGGAAAATGAATTGGCTCCGTATCCGGAAACGCGTCAAGAAGGAGGGCTGGCGCGATTCTTGTGCAGGTCTTGGTCCGTGTCCAGTTTCCGGCGGTAATTTGAATTTGGGTTTTTCAAA</canonical>
            <polymorphic>TTTTCAGAGTGAAAATCCCTGATTTTTCGCATTTTTAGCATGAAAATCGCATATTTTCAGCTCGAAAACCTCTGAAAACATCATTTTCAAGCCAAAAATGGCGAAATTCAAAATTATTGAATTCAGACGATTTTAGAGTCAAAATGTTCACAAAAACCAATTTTTGGGGTAAAATCCCAAATTGTTCGCATTTTTAGCATAAAAATCGCATATTTTCAGCTCGAAAACCTCTAAAAACATAATTTTCAAACAAACCAAAAAATGACCAAAATCGAAGTTTTAGGATTTGGCCGATTTTTGAGTCAAAATCTTCACAATAACCATGGTTCTAAAGTAGAAAACCCTGAATTTTCGCATTTTTAGCATAAAAATCAGATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGCTCTCGCCACCAACCGACATCTCGCCGCCGCCCAGCTAGATTTTTTCGCTGTTTTTTTCCGGATTTTTCGCTTTATTCTTAGATYTTAAATCAATAAATTCGAATTCCTCACCTTACTGAGTCTTACAATGAGCACAACCTTGACACCTTCCGTGCTCAGACCAAGTTTTTTCAGCTCGCTCTGAAAAAATGATCTTTTAGGCACGACAAATTCGATTTTTAGCCCGAAATCCTCACTTTTAACGCTGGCACAGTCAAATTCTCAACTTGTGTCCCGTTCAGCAGTGGCATATAAGAGATTGAAGAACCGCTGAAAAAAAATTATCTGAATTTTCCAGGTTTTTGATGGGTTCCAGGTGACGGACGGCGGTCTTCAAACACAAAAAATTCGAAATCCACGACCTAGAAAACGTGGAAAGTGCGAAAAAAAGGCTGGAATCCATGGAAATCGAGGGATAAAATGAGTTGGAAAATGAATTGGCTCCGTATCCGGAAACGCGTCAAGAAGGAGGGCTGGCGCGATTCTTGTGCAGGTCTTGGTCCGTGTCCAGTTTCCGGCGGTAATTTGAATTTGGGTTTTTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCAAAATCTTCACAATAACCAT</pcr_primer_p1>
		<pcr_primer_p2>GTGTCAAGGTTGTGCTCATT</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>GTCAAAATCTTCACAATAACCATGGTTCTAAAGTAGAAAACCCTGAATTTTCGCATTTTTAGCATAAAAATCAGATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGCTCTCGCCACCAACCGACATCTCGCCGCCGCCCAGCTAGATTTTTTCGCTGTTTTTTTCCGGATTTTTCGCTTTATTCTTAGATTTTAAATCAATAAATTCGAATTCCTCACCTTACTGAGTCTTACAATGAGCACAACCTTGACAC</canonical_amplicon>
		<polymorphic_amplicon>GTCAAAATCTTCACAATAACCATGGTTCTAAAGTAGAAAACCCTGAATTTTCGCATTTTTAGCATAAAAATCAGATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGCTCTCGCCACCAACCGACATCTCGCCGCCGCCCAGCTAGATTTTTTCGCTGTTTTTTTCCGGATTTTTCGCTTTATTCTTAGATYTTAAATCAATAAATTCGAATTCCTCACCTTACTGAGTCTTACAATGAGCACAACCTTGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb512</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>50201</contig_pos>
        <strand>+</strand>
        <context>TCTTTTAGGC[A/C]CGAMAAATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCTCAGACCAAGTTTTTTCAGCTCGCTCTGAAAAAATGATCTTTTAGGC</left_flank>
        <right_flank>CGACAAATTCGATTTTTAGCCCGAAATCCTCACTTTTAACGCTGGCACAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTCAGACGATTTTAGAGTCAAAATGTTCACAAAAACCAATTTTTGGGGTAAAATCCCAAATTGTTCGCATTTTTAGCATAAAAATCGCATATTTTCAGCTCGAAAACCTCTAAAAACATAATTTTCAAACAAACCAAAAAATGACCAAAATCGAAGTTTTAGGATTTGGCCGATTTTTGAGTCAAAATCTTCACAATAACCATGGTTCTAAAGTAGAAAACCCTGAATTTTCGCATTTTTAGCATAAAAATCAGATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGCTCTCGCCACCAACCGACATCTCGCCGCCGCCCAGCTAGATTTTTTCGCTGTTTTTTTCCGGATTTTTCGCTTTATTCTTAGATTTTAAATCAATAAATTCGAATTCCTCACCTTACTGAGTCTTACAATGAGCACAACCTTGACACCTTCCGTGCTCAGACCAAGTTTTTTCAGCTCGCTCTGAAAAAATGATCTTTTAGGCACGACAAATTCGATTTTTAGCCCGAAATCCTCACTTTTAACGCTGGCACAGTCAAATTCTCAACTTGTGTCCCGTTCAGCAGTGGCATATAAGAGATTGAAGAACCGCTGAAAAAAAATTATCTGAATTTTCCAGGTTTTTGATGGGTTCCAGGTGACGGACGGCGGTCTTCAAACACAAAAAATTCGAAATCCACGACCTAGAAAACGTGGAAAGTGCGAAAAAAAGGCTGGAATCCATGGAAATCGAGGGATAAAATGAGTTGGAAAATGAATTGGCTCCGTATCCGGAAACGCGTCAAGAAGGAGGGCTGGCGCGATTCTTGTGCAGGTCTTGGTCCGTGTCCAGTTTCCGGCGGTAATTTGAATTTGGGTTTTTCAAAAGGGGTGAAATTGTTGACTTTTCTTCTTAAAATATTGATGGTTCTTCTCGATTTTTCTGGTTTTTCTAGACCTTTATCTGTTTTTAATCCACAAATTGGCGAAAAATCTGAAATTTAAG</canonical>
            <polymorphic>AATTCAGACGATTTTAGAGTCAAAATGTTCACAAAAACCAATTTTTGGGGTAAAATCCCAAATTGTTCGCATTTTTAGCATAAAAATCGCATATTTTCAGCTCGAAAACCTCTAAAAACATAATTTTCAAACAAACCAAAAAATGACCAAAATCGAAGTTTTAGGATTTGGCCGATTTTTGAGTCAAAATCTTCACAATAACCATGGTTCTAAAGTAGAAAACCCTGAATTTTCGCATTTTTAGCATAAAAATCAGATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGCTCTCGCCACCAACCGACATCTCGCCGCCGCCCAGCTAGATTTTTTCGCTGTTTTTTTCCGGATTTTTCGCTTTATTCTTAGATTTTAAATCAATAAATTCGAATTCCTCACCTTACTGAGTCTTACAATGAGCACAACCTTGACACCTTCCGTGCTCAGACCAAGTTTTTTCAGCTCGCTCTGAAAAAATGATCTTTTAGGCMCGACAAATTCGATTTTTAGCCCGAAATCCTCACTTTTAACGCTGGCACAGTCAAATTCTCAACTTGTGTCCCGTTCAGCAGTGGCATATAAGAGATTGAAGAACCGCTGAAAAAAAATTATCTGAATTTTCCAGGTTTTTGATGGGTTCCAGGTGACGGACGGCGGTCTTCAAACACAAAAAATTCGAAATCCACGACCTAGAAAACGTGGAAAGTGCGAAAAAAAGGCTGGAATCCATGGAAATCGAGGGATAAAATGAGTTGGAAAATGAATTGGCTCCGTATCCGGAAACGCGTCAAGAAGGAGGGCTGGCGCGATTCTTGTGCAGGTCTTGGTCCGTGTCCAGTTTCCGGCGGTAATTTGAATTTGGGTTTTTCAAAAGGGGTGAAATTGTTGACTTTTCTTCTTAAAATATTGATGGTTCTTCTCGATTTTTCTGGTTTTTCTAGACCTTTATCTGTTTTTAATCCACAAATTGGCGAAAAATCTGAAATTTAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>164 109 102 84 82 72 49 46 32 31 28 28 24 21 21 18 16 16 15 15 11 9 7</canonical_bands>
                <polymorphic_bands>164 109 102 84 82 81 72 46 31 28 28 24 21 21 18 16 16 15 15 11 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTCCTCACCTTACTGAGTC</pcr_primer_p1>
		<pcr_primer_p2>AAAACCTGGAAAATTCAGATAAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GAATTCCTCACCTTACTGAGTCTTACAATGAGCACAACCTTGACACCTTCCGTGCTCAGACCAAGTTTTTTCAGCTCGCTCTGAAAAAATGATCTTTTAGGCACGACAAATTCGATTTTTAGCCCGAAATCCTCACTTTTAACGCTGGCACAGTCAAATTCTCAACTTGTGTCCCGTTCAGCAGTGGCATATAAGAGATTGAAGAACCGCTGAAAAAAAATTATCTGAATTTTCCAGGTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAATTCCTCACCTTACTGAGTCTTACAATGAGCACAACCTTGACACCTTCCGTGCTCAGACCAAGTTTTTTCAGCTCGCTCTGAAAAAATGATCTTTTAGGCMCGACAAATTCGATTTTTAGCCCGAAATCCTCACTTTTAACGCTGGCACAGTCAAATTCTCAACTTGTGTCCCGTTCAGCAGTGGCATATAAGAGATTGAAGAACCGCTGAAAAAAAATTATCTGAATTTTCCAGGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb513</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>50205</contig_pos>
        <strand>+</strand>
        <context>TTAGGCMCGA[A/C]AAATTCGATT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAGACCAAGTTTTTTCAGCTCGCTCTGAAAAAATGATCTTTTAGGCACGA</left_flank>
        <right_flank>AAATTCGATTTTTAGCCCGAAATCCTCACTTTTAACGCTGGCACAGTCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGACGATTTTAGAGTCAAAATGTTCACAAAAACCAATTTTTGGGGTAAAATCCCAAATTGTTCGCATTTTTAGCATAAAAATCGCATATTTTCAGCTCGAAAACCTCTAAAAACATAATTTTCAAACAAACCAAAAAATGACCAAAATCGAAGTTTTAGGATTTGGCCGATTTTTGAGTCAAAATCTTCACAATAACCATGGTTCTAAAGTAGAAAACCCTGAATTTTCGCATTTTTAGCATAAAAATCAGATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGCTCTCGCCACCAACCGACATCTCGCCGCCGCCCAGCTAGATTTTTTCGCTGTTTTTTTCCGGATTTTTCGCTTTATTCTTAGATTTTAAATCAATAAATTCGAATTCCTCACCTTACTGAGTCTTACAATGAGCACAACCTTGACACCTTCCGTGCTCAGACCAAGTTTTTTCAGCTCGCTCTGAAAAAATGATCTTTTAGGCACGACAAATTCGATTTTTAGCCCGAAATCCTCACTTTTAACGCTGGCACAGTCAAATTCTCAACTTGTGTCCCGTTCAGCAGTGGCATATAAGAGATTGAAGAACCGCTGAAAAAAAATTATCTGAATTTTCCAGGTTTTTGATGGGTTCCAGGTGACGGACGGCGGTCTTCAAACACAAAAAATTCGAAATCCACGACCTAGAAAACGTGGAAAGTGCGAAAAAAAGGCTGGAATCCATGGAAATCGAGGGATAAAATGAGTTGGAAAATGAATTGGCTCCGTATCCGGAAACGCGTCAAGAAGGAGGGCTGGCGCGATTCTTGTGCAGGTCTTGGTCCGTGTCCAGTTTCCGGCGGTAATTTGAATTTGGGTTTTTCAAAAGGGGTGAAATTGTTGACTTTTCTTCTTAAAATATTGATGGTTCTTCTCGATTTTTCTGGTTTTTCTAGACCTTTATCTGTTTTTAATCCACAAATTGGCGAAAAATCTGAAATTTAAGGATT</canonical>
            <polymorphic>CAGACGATTTTAGAGTCAAAATGTTCACAAAAACCAATTTTTGGGGTAAAATCCCAAATTGTTCGCATTTTTAGCATAAAAATCGCATATTTTCAGCTCGAAAACCTCTAAAAACATAATTTTCAAACAAACCAAAAAATGACCAAAATCGAAGTTTTAGGATTTGGCCGATTTTTGAGTCAAAATCTTCACAATAACCATGGTTCTAAAGTAGAAAACCCTGAATTTTCGCATTTTTAGCATAAAAATCAGATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGCTCTCGCCACCAACCGACATCTCGCCGCCGCCCAGCTAGATTTTTTCGCTGTTTTTTTCCGGATTTTTCGCTTTATTCTTAGATTTTAAATCAATAAATTCGAATTCCTCACCTTACTGAGTCTTACAATGAGCACAACCTTGACACCTTCCGTGCTCAGACCAAGTTTTTTCAGCTCGCTCTGAAAAAATGATCTTTTAGGCACGAMAAATTCGATTTTTAGCCCGAAATCCTCACTTTTAACGCTGGCACAGTCAAATTCTCAACTTGTGTCCCGTTCAGCAGTGGCATATAAGAGATTGAAGAACCGCTGAAAAAAAATTATCTGAATTTTCCAGGTTTTTGATGGGTTCCAGGTGACGGACGGCGGTCTTCAAACACAAAAAATTCGAAATCCACGACCTAGAAAACGTGGAAAGTGCGAAAAAAAGGCTGGAATCCATGGAAATCGAGGGATAAAATGAGTTGGAAAATGAATTGGCTCCGTATCCGGAAACGCGTCAAGAAGGAGGGCTGGCGCGATTCTTGTGCAGGTCTTGGTCCGTGTCCAGTTTCCGGCGGTAATTTGAATTTGGGTTTTTCAAAAGGGGTGAAATTGTTGACTTTTCTTCTTAAAATATTGATGGTTCTTCTCGATTTTTCTGGTTTTTCTAGACCTTTATCTGTTTTTAATCCACAAATTGGCGAAAAATCTGAAATTTAAGGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTCCTCACCTTACTGAGTC</pcr_primer_p1>
		<pcr_primer_p2>AAAACCTGGAAAATTCAGATAAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GAATTCCTCACCTTACTGAGTCTTACAATGAGCACAACCTTGACACCTTCCGTGCTCAGACCAAGTTTTTTCAGCTCGCTCTGAAAAAATGATCTTTTAGGCACGACAAATTCGATTTTTAGCCCGAAATCCTCACTTTTAACGCTGGCACAGTCAAATTCTCAACTTGTGTCCCGTTCAGCAGTGGCATATAAGAGATTGAAGAACCGCTGAAAAAAAATTATCTGAATTTTCCAGGTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAATTCCTCACCTTACTGAGTCTTACAATGAGCACAACCTTGACACCTTCCGTGCTCAGACCAAGTTTTTTCAGCTCGCTCTGAAAAAATGATCTTTTAGGCACGAMAAATTCGATTTTTAGCCCGAAATCCTCACTTTTAACGCTGGCACAGTCAAATTCTCAACTTGTGTCCCGTTCAGCAGTGGCATATAAGAGATTGAAGAACCGCTGAAAAAAAATTATCTGAATTTTCCAGGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb514</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>50300</contig_pos>
        <strand>+</strand>
        <context>TAAGAGATTG[A/G]AGAACCGCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTCAAATTCTCAACTTGTGTCCCGTTCAGCAGTGGCATATAAGAGATTG</left_flank>
        <right_flank>AGAACCGCTGAAAAAAAATTATCTGAATTTTCCAGGTTTTTGATGGGTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCGAAAACCTCTAAAAACATAATTTTCAAACAAACCAAAAAATGACCAAAATCGAAGTTTTAGGATTTGGCCGATTTTTGAGTCAAAATCTTCACAATAACCATGGTTCTAAAGTAGAAAACCCTGAATTTTCGCATTTTTAGCATAAAAATCAGATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGCTCTCGCCACCAACCGACATCTCGCCGCCGCCCAGCTAGATTTTTTCGCTGTTTTTTTCCGGATTTTTCGCTTTATTCTTAGATTTTAAATCAATAAATTCGAATTCCTCACCTTACTGAGTCTTACAATGAGCACAACCTTGACACCTTCCGTGCTCAGACCAAGTTTTTTCAGCTCGCTCTGAAAAAATGATCTTTTAGGCACGACAAATTCGATTTTTAGCCCGAAATCCTCACTTTTAACGCTGGCACAGTCAAATTCTCAACTTGTGTCCCGTTCAGCAGTGGCATATAAGAGATTGAAGAACCGCTGAAAAAAAATTATCTGAATTTTCCAGGTTTTTGATGGGTTCCAGGTGACGGACGGCGGTCTTCAAACACAAAAAATTCGAAATCCACGACCTAGAAAACGTGGAAAGTGCGAAAAAAAGGCTGGAATCCATGGAAATCGAGGGATAAAATGAGTTGGAAAATGAATTGGCTCCGTATCCGGAAACGCGTCAAGAAGGAGGGCTGGCGCGATTCTTGTGCAGGTCTTGGTCCGTGTCCAGTTTCCGGCGGTAATTTGAATTTGGGTTTTTCAAAAGGGGTGAAATTGTTGACTTTTCTTCTTAAAATATTGATGGTTCTTCTCGATTTTTCTGGTTTTTCTAGACCTTTATCTGTTTTTAATCCACAAATTGGCGAAAAATCTGAAATTTAAGGATTTTTTTTGAATTTGATAGATAATTTTCGACTTTTTCCAGTTTTTTTTCATTATTTTCATCACTTTTTTCGATTTCAATCACACCTGAAAACCCTGA</canonical>
            <polymorphic>GCTCGAAAACCTCTAAAAACATAATTTTCAAACAAACCAAAAAATGACCAAAATCGAAGTTTTAGGATTTGGCCGATTTTTGAGTCAAAATCTTCACAATAACCATGGTTCTAAAGTAGAAAACCCTGAATTTTCGCATTTTTAGCATAAAAATCAGATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGCTCTCGCCACCAACCGACATCTCGCCGCCGCCCAGCTAGATTTTTTCGCTGTTTTTTTCCGGATTTTTCGCTTTATTCTTAGATTTTAAATCAATAAATTCGAATTCCTCACCTTACTGAGTCTTACAATGAGCACAACCTTGACACCTTCCGTGCTCAGACCAAGTTTTTTCAGCTCGCTCTGAAAAAATGATCTTTTAGGCACGACAAATTCGATTTTTAGCCCGAAATCCTCACTTTTAACGCTGGCACAGTCAAATTCTCAACTTGTGTCCCGTTCAGCAGTGGCATATAAGAGATTGRAGAACCGCTGAAAAAAAATTATCTGAATTTTCCAGGTTTTTGATGGGTTCCAGGTGACGGACGGCGGTCTTCAAACACAAAAAATTCGAAATCCACGACCTAGAAAACGTGGAAAGTGCGAAAAAAAGGCTGGAATCCATGGAAATCGAGGGATAAAATGAGTTGGAAAATGAATTGGCTCCGTATCCGGAAACGCGTCAAGAAGGAGGGCTGGCGCGATTCTTGTGCAGGTCTTGGTCCGTGTCCAGTTTCCGGCGGTAATTTGAATTTGGGTTTTTCAAAAGGGGTGAAATTGTTGACTTTTCTTCTTAAAATATTGATGGTTCTTCTCGATTTTTCTGGTTTTTCTAGACCTTTATCTGTTTTTAATCCACAAATTGGCGAAAAATCTGAAATTTAAGGATTTTTTTTGAATTTGATAGATAATTTTCGACTTTTTCCAGTTTTTTTTCATTATTTTCATCACTTTTTTCGATTTCAATCACACCTGAAAACCCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAAATCCTCACTTTTAACG</pcr_primer_p1>
		<pcr_primer_p2>AACTCATTTTATCCCTCGATTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CGAAATCCTCACTTTTAACGCTGGCACAGTCAAATTCTCAACTTGTGTCCCGTTCAGCAGTGGCATATAAGAGATTGAAGAACCGCTGAAAAAAAATTATCTGAATTTTCCAGGTTTTTGATGGGTTCCAGGTGACGGACGGCGGTCTTCAAACACAAAAAATTCGAAATCCACGACCTAGAAAACGTGGAAAGTGCGAAAAAAAGGCTGGAATCCATGGAAATCGAGGGATAAAATGAGTT</canonical_amplicon>
		<polymorphic_amplicon>CGAAATCCTCACTTTTAACGCTGGCACAGTCAAATTCTCAACTTGTGTCCCGTTCAGCAGTGGCATATAAGAGATTGRAGAACCGCTGAAAAAAAATTATCTGAATTTTCCAGGTTTTTGATGGGTTCCAGGTGACGGACGGCGGTCTTCAAACACAAAAAATTCGAAATCCACGACCTAGAAAACGTGGAAAGTGCGAAAAAAAGGCTGGAATCCATGGAAATCGAGGGATAAAATGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb515</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>50432</contig_pos>
        <strand></strand>
        <context>AAAAAAGGCT[G/T]KAATCCATGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATTCGAAATCCACGACCTAGAAAACGTGGAAAGTGCGAAAAAAAGGCT</left_flank>
        <right_flank>GAATCCATGGAAATCGAGGGATAAAATGAGTTGGAAAATGAATTGGCTCC</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGCATTTTTAGCATAAAAATCAGATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGCTCTCGCCACCAACCGACATCTCGCCGCCGCCCAGCTAGATTTTTTCGCTGTTTTTTTCCGGATTTTTCGCTTTATTCTTAGATTTTAAATCAATAAATTCGAATTCCTCACCTTACTGAGTCTTACAATGAGCACAACCTTGACACCTTCCGTGCTCAGACCAAGTTTTTTCAGCTCGCTCTGAAAAAATGATCTTTTAGGCACGACAAATTCGATTTTTAGCCCGAAATCCTCACTTTTAACGCTGGCACAGTCAAATTCTCAACTTGTGTCCCGTTCAGCAGTGGCATATAAGAGATTGAAGAACCGCTGAAAAAAAATTATCTGAATTTTCCAGGTTTTTGATGGGTTCCAGGTGACGGACGGCGGTCTTCAAACACAAAAAATTCGAAATCCACGACCTAGAAAACGTGGAAAGTGCGAAAAAAAGGCTGGAATCCATGGAAATCGAGGGATAAAATGAGTTGGAAAATGAATTGGCTCCGTATCCGGAAACGCGTCAAGAAGGAGGGCTGGCGCGATTCTTGTGCAGGTCTTGGTCCGTGTCCAGTTTCCGGCGGTAATTTGAATTTGGGTTTTTCAAAAGGGGTGAAATTGTTGACTTTTCTTCTTAAAATATTGATGGTTCTTCTCGATTTTTCTGGTTTTTCTAGACCTTTATCTGTTTTTAATCCACAAATTGGCGAAAAATCTGAAATTTAAGGATTTTTTTTGAATTTGATAGATAATTTTCGACTTTTTCCAGTTTTTTTTCATTATTTTCATCACTTTTTTCGATTTCAATCACACCTGAAAACCCTGAAAATCAAATATTCCGGGCAAAAAATCTTGGAAAACTTCAATTTTAGAGATTTCGTCGATTTTTCCCAATTTTTCTGCAATTTCATCATATTTTCGACTATTCCCATCCTTTTCAGACAATTTTCATTTGTTT</canonical>
            <polymorphic>TTCGCATTTTTAGCATAAAAATCAGATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGCTCTCGCCACCAACCGACATCTCGCCGCCGCCCAGCTAGATTTTTTCGCTGTTTTTTTCCGGATTTTTCGCTTTATTCTTAGATTTTAAATCAATAAATTCGAATTCCTCACCTTACTGAGTCTTACAATGAGCACAACCTTGACACCTTCCGTGCTCAGACCAAGTTTTTTCAGCTCGCTCTGAAAAAATGATCTTTTAGGCACGACAAATTCGATTTTTAGCCCGAAATCCTCACTTTTAACGCTGGCACAGTCAAATTCTCAACTTGTGTCCCGTTCAGCAGTGGCATATAAGAGATTGAAGAACCGCTGAAAAAAAATTATCTGAATTTTCCAGGTTTTTGATGGGTTCCAGGTGACGGACGGCGGTCTTCAAACACAAAAAATTCGAAATCCACGACCTAGAAAACGTGGAAAGTGCGAAAAAAAGGCTKGAATCCATGGAAATCGAGGGATAAAATGAGTTGGAAAATGAATTGGCTCCGTATCCGGAAACGCGTCAAGAAGGAGGGCTGGCGCGATTCTTGTGCAGGTCTTGGTCCGTGTCCAGTTTCCGGCGGTAATTTGAATTTGGGTTTTTCAAAAGGGGTGAAATTGTTGACTTTTCTTCTTAAAATATTGATGGTTCTTCTCGATTTTTCTGGTTTTTCTAGACCTTTATCTGTTTTTAATCCACAAATTGGCGAAAAATCTGAAATTTAAGGATTTTTTTTGAATTTGATAGATAATTTTCGACTTTTTCCAGTTTTTTTTCATTATTTTCATCACTTTTTTCGATTTCAATCACACCTGAAAACCCTGAAAATCAAATATTCCGGGCAAAAAATCTTGGAAAACTTCAATTTTAGAGATTTCGTCGATTTTTCCCAATTTTTCTGCAATTTCATCATATTTTCGACTATTCCCATCCTTTTCAGACAATTTTCATTTGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTTTCCAGGTTTTTGATG</pcr_primer_p1>
		<pcr_primer_p2>AAAACCCAAATTCAAATTACC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GAATTTTCCAGGTTTTTGATGGGTTCCAGGTGACGGACGGCGGTCTTCAAACACAAAAAATTCGAAATCCACGACCTAGAAAACGTGGAAAGTGCGAAAAAAAGGCTGGAATCCATGGAAATCGAGGGATAAAATGAGTTGGAAAATGAATTGGCTCCGTATCCGGAAACGCGTCAAGAAGGAGGGCTGGCGCGATTCTTGTGCAGGTCTTGGTCCGTGTCCAGTTTCCGGCGGTAATTTGAATTTGGGTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAATTTTCCAGGTTTTTGATGGGTTCCAGGTGACGGACGGCGGTCTTCAAACACAAAAAATTCGAAATCCACGACCTAGAAAACGTGGAAAGTGCGAAAAAAAGGCTKGAATCCATGGAAATCGAGGGATAAAATGAGTTGGAAAATGAATTGGCTCCGTATCCGGAAACGCGTCAAGAAGGAGGGCTGGCGCGATTCTTGTGCAGGTCTTGGTCCGTGTCCAGTTTCCGGCGGTAATTTGAATTTGGGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb519</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>61979</contig_pos>
        <strand>+</strand>
        <context>CATTTAAATT[G/T]YCGCAACAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAATTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATT</left_flank>
        <right_flank>TCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCCACAATGTTTTTTCAAAAAATTCGGTATCAAATTATTTGTCATGTTTTGCGGTTGGAATGCATTCAATTTGAGCTCTTGAAGTTTTCTAGAAAGTATGTTACAGCCATTTTTCTGATTTTCATCCGAATAATCTGAAAATCGAAAATTGTCAGATTTTTAGGTTTTTAACGCCAAAATGTTTGCCTTGTTATGGCAATTCGAACGCACCTAATTTCAGCTTTCAGAACCTTCTAGAACAATTTCTATAACCGTTTTTCCGATTTTCAGCCAAAAAATCTGAAAATTCGAAATTTGGCTATAAAAACTTTTCTAGAGGGGCTTAGGCAACAAATTCAAATGCATTCAAATTGCCAAAACACGGCAAATATTTTGACATAAAAAATTTGAGAATCTAAAAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGGAAAAATGGCTGTAAAAATTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTTTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAAATTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAAATTTGAAAATCAAAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTATCGTTATCAGTTTGGCACTTTGGTTTTGGCACCCGTTTTATGCAGCGATTTT</canonical>
            <polymorphic>CGCCACAATGTTTTTTCAAAAAATTCGGTATCAAATTATTTGTCATGTTTTGCGGTTGGAATGCATTCAATTTGAGCTCTTGAAGTTTTCTAGAAAGTATGTTACAGCCATTTTTCTGATTTTCATCCGAATAATCTGAAAATCGAAAATTGTCAGATTTTTAGGTTTTTAACGCCAAAATGTTTGCCTTGTTATGGCAATTCGAACGCACCTAATTTCAGCTTTCAGAACCTTCTAGAACAATTTCTATAACCGTTTTTCCGATTTTCAGCCAAAAAATCTGAAAATTCGAAATTTGGCTATAAAAACTTTTCTAGAGGGGCTTAGGCAACAAATTCAAATGCATTCAAATTGCCAAAACACGGCAAATATTTTGACATAAAAAATTTGAGAATCTAAAAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGGAAAAATGGCTGTAAAAATTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTKTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAAATTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAAATTTGAAAATCAAAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTATCGTTATCAGTTTGGCACTTTGGTTTTGGCACCCGTTTTATGCAGCGATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>264 116 115 95 53 51 50 49 43 41 29 27 23 21 16 7</canonical_bands>
                <polymorphic_bands>264 144 116 115 53 51 50 43 41 29 27 23 21 16 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGGCTGTAAAAATTGTTCT</pcr_primer_p1>
		<pcr_primer_p2>ATCTGAAAAATCTGAAAATCAAA</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>AAATGGCTGTAAAAATTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTTTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGAT</canonical_amplicon>
		<polymorphic_amplicon>AAATGGCTGTAAAAATTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTKTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb520</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>61980</contig_pos>
        <strand>+</strand>
        <context>ATTTAAATTK[C/T]CGCAACAAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTT</left_flank>
        <right_flank>CGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCACAATGTTTTTTCAAAAAATTCGGTATCAAATTATTTGTCATGTTTTGCGGTTGGAATGCATTCAATTTGAGCTCTTGAAGTTTTCTAGAAAGTATGTTACAGCCATTTTTCTGATTTTCATCCGAATAATCTGAAAATCGAAAATTGTCAGATTTTTAGGTTTTTAACGCCAAAATGTTTGCCTTGTTATGGCAATTCGAACGCACCTAATTTCAGCTTTCAGAACCTTCTAGAACAATTTCTATAACCGTTTTTCCGATTTTCAGCCAAAAAATCTGAAAATTCGAAATTTGGCTATAAAAACTTTTCTAGAGGGGCTTAGGCAACAAATTCAAATGCATTCAAATTGCCAAAACACGGCAAATATTTTGACATAAAAAATTTGAGAATCTAAAAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGGAAAAATGGCTGTAAAAATTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTTTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAAATTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAAATTTGAAAATCAAAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTATCGTTATCAGTTTGGCACTTTGGTTTTGGCACCCGTTTTATGCAGCGATTTTG</canonical>
            <polymorphic>GCCACAATGTTTTTTCAAAAAATTCGGTATCAAATTATTTGTCATGTTTTGCGGTTGGAATGCATTCAATTTGAGCTCTTGAAGTTTTCTAGAAAGTATGTTACAGCCATTTTTCTGATTTTCATCCGAATAATCTGAAAATCGAAAATTGTCAGATTTTTAGGTTTTTAACGCCAAAATGTTTGCCTTGTTATGGCAATTCGAACGCACCTAATTTCAGCTTTCAGAACCTTCTAGAACAATTTCTATAACCGTTTTTCCGATTTTCAGCCAAAAAATCTGAAAATTCGAAATTTGGCTATAAAAACTTTTCTAGAGGGGCTTAGGCAACAAATTCAAATGCATTCAAATTGCCAAAACACGGCAAATATTTTGACATAAAAAATTTGAGAATCTAAAAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGGAAAAATGGCTGTAAAAATTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTTYCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAAATTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAAATTTGAAAATCAAAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTATCGTTATCAGTTTGGCACTTTGGTTTTGGCACCCGTTTTATGCAGCGATTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGGCTGTAAAAATTGTTCT</pcr_primer_p1>
		<pcr_primer_p2>ATCTGAAAAATCTGAAAATCAAA</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>AAATGGCTGTAAAAATTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTTTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGAT</canonical_amplicon>
		<polymorphic_amplicon>AAATGGCTGTAAAAATTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTTYCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb521</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>62019</contig_pos>
        <strand>+</strand>
        <context>AAACTTGAAA[A/C]TTTGAATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATTTAAATTTTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAA</left_flank>
        <right_flank>TTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCATGTTTTGCGGTTGGAATGCATTCAATTTGAGCTCTTGAAGTTTTCTAGAAAGTATGTTACAGCCATTTTTCTGATTTTCATCCGAATAATCTGAAAATCGAAAATTGTCAGATTTTTAGGTTTTTAACGCCAAAATGTTTGCCTTGTTATGGCAATTCGAACGCACCTAATTTCAGCTTTCAGAACCTTCTAGAACAATTTCTATAACCGTTTTTCCGATTTTCAGCCAAAAAATCTGAAAATTCGAAATTTGGCTATAAAAACTTTTCTAGAGGGGCTTAGGCAACAAATTCAAATGCATTCAAATTGCCAAAACACGGCAAATATTTTGACATAAAAAATTTGAGAATCTAAAAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGGAAAAATGGCTGTAAAAATTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTTTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAAATTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAAATTTGAAAATCAAAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTATCGTTATCAGTTTGGCACTTTGGTTTTGGCACCCGTTTTATGCAGCGATTTTGACATTGGTGAGTCTTTTTGCAGTCTGAATTGCGTTTTTC</canonical>
            <polymorphic>TGTCATGTTTTGCGGTTGGAATGCATTCAATTTGAGCTCTTGAAGTTTTCTAGAAAGTATGTTACAGCCATTTTTCTGATTTTCATCCGAATAATCTGAAAATCGAAAATTGTCAGATTTTTAGGTTTTTAACGCCAAAATGTTTGCCTTGTTATGGCAATTCGAACGCACCTAATTTCAGCTTTCAGAACCTTCTAGAACAATTTCTATAACCGTTTTTCCGATTTTCAGCCAAAAAATCTGAAAATTCGAAATTTGGCTATAAAAACTTTTCTAGAGGGGCTTAGGCAACAAATTCAAATGCATTCAAATTGCCAAAACACGGCAAATATTTTGACATAAAAAATTTGAGAATCTAAAAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGGAAAAATGGCTGTAAAAATTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTTTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAAMTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAAATTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAAATTTGAAAATCAAAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTATCGTTATCAGTTTGGCACTTTGGTTTTGGCACCCGTTTTATGCAGCGATTTTGACATTGGTGAGTCTTTTTGCAGTCTGAATTGCGTTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTTCTAGAATGTTCCGAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTGAAAATCTGAAAAATCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTTTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGATTTTCAG</canonical_amplicon>
		<polymorphic_amplicon>TTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTTTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAAMTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGATTTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb522</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>62078</contig_pos>
        <strand>+</strand>
        <context>GCTATAAAAA[A/C]TTTTCTAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAA</left_flank>
        <right_flank>TTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTACAGCCATTTTTCTGATTTTCATCCGAATAATCTGAAAATCGAAAATTGTCAGATTTTTAGGTTTTTAACGCCAAAATGTTTGCCTTGTTATGGCAATTCGAACGCACCTAATTTCAGCTTTCAGAACCTTCTAGAACAATTTCTATAACCGTTTTTCCGATTTTCAGCCAAAAAATCTGAAAATTCGAAATTTGGCTATAAAAACTTTTCTAGAGGGGCTTAGGCAACAAATTCAAATGCATTCAAATTGCCAAAACACGGCAAATATTTTGACATAAAAAATTTGAGAATCTAAAAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGGAAAAATGGCTGTAAAAATTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTTTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAAATTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAAATTTGAAAATCAAAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTATCGTTATCAGTTTGGCACTTTGGTTTTGGCACCCGTTTTATGCAGCGATTTTGACATTGGTGAGTCTTTTTGCAGTCTGAATTGCGTTTTTCAAAGTTTAGAGGCTTACAAAAGTAGGTCAAAGTTGTCAGAGGAGTTTGAAAGTTTTACA</canonical>
            <polymorphic>TGTTACAGCCATTTTTCTGATTTTCATCCGAATAATCTGAAAATCGAAAATTGTCAGATTTTTAGGTTTTTAACGCCAAAATGTTTGCCTTGTTATGGCAATTCGAACGCACCTAATTTCAGCTTTCAGAACCTTCTAGAACAATTTCTATAACCGTTTTTCCGATTTTCAGCCAAAAAATCTGAAAATTCGAAATTTGGCTATAAAAACTTTTCTAGAGGGGCTTAGGCAACAAATTCAAATGCATTCAAATTGCCAAAACACGGCAAATATTTTGACATAAAAAATTTGAGAATCTAAAAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGGAAAAATGGCTGTAAAAATTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTTTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAMTTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAAATTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAAATTTGAAAATCAAAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTATCGTTATCAGTTTGGCACTTTGGTTTTGGCACCCGTTTTATGCAGCGATTTTGACATTGGTGAGTCTTTTTGCAGTCTGAATTGCGTTTTTCAAAGTTTAGAGGCTTACAAAAGTAGGTCAAAGTTGTCAGAGGAGTTTGAAAGTTTTACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>215 186 115 95 53 51 50 49 43 41 29 27 23 16 7</canonical_bands>
                <polymorphic_bands>215 186 115 95 80 51 50 49 43 41 29 23 16 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>115 84 72 59 52 51 49 48 44 43 41 40 35 28 28 27 27 23 16 16 15 15 15 15 14 13 8 7</canonical_bands>
                <polymorphic_bands>115 84 72 59 52 51 49 48 44 43 41 40 40 35 28 28 27 23 16 16 15 15 15 15 14 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTTCTAGAATGTTCCGAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTGAAAATCTGAAAAATCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTTTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGATTTTCAG</canonical_amplicon>
		<polymorphic_amplicon>TTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTTTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAMTTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGATTTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb524</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>62156</contig_pos>
        <strand>+</strand>
        <context>AATTTAAAAA[A/T]TTTGATTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAA</left_flank>
        <right_flank>TTTGATTTTCAGATTTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATGTTTGCCTTGTTATGGCAATTCGAACGCACCTAATTTCAGCTTTCAGAACCTTCTAGAACAATTTCTATAACCGTTTTTCCGATTTTCAGCCAAAAAATCTGAAAATTCGAAATTTGGCTATAAAAACTTTTCTAGAGGGGCTTAGGCAACAAATTCAAATGCATTCAAATTGCCAAAACACGGCAAATATTTTGACATAAAAAATTTGAGAATCTAAAAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGGAAAAATGGCTGTAAAAATTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTTTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAAATTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAAATTTGAAAATCAAAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTATCGTTATCAGTTTGGCACTTTGGTTTTGGCACCCGTTTTATGCAGCGATTTTGACATTGGTGAGTCTTTTTGCAGTCTGAATTGCGTTTTTCAAAGTTTAGAGGCTTACAAAAGTAGGTCAAAGTTGTCAGAGGAGTTTGAAAGTTTTACAGTATATTAAATAAAATACAGGCTTCATTTTTGTAGTTGACACTTTTTTTTGAAAATTAAGTCCTAGGGAGATATGCTA</canonical>
            <polymorphic>AAATGTTTGCCTTGTTATGGCAATTCGAACGCACCTAATTTCAGCTTTCAGAACCTTCTAGAACAATTTCTATAACCGTTTTTCCGATTTTCAGCCAAAAAATCTGAAAATTCGAAATTTGGCTATAAAAACTTTTCTAGAGGGGCTTAGGCAACAAATTCAAATGCATTCAAATTGCCAAAACACGGCAAATATTTTGACATAAAAAATTTGAGAATCTAAAAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGGAAAAATGGCTGTAAAAATTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTTTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAAWTTTGATTTTCAGATTTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAAATTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAAATTTGAAAATCAAAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTATCGTTATCAGTTTGGCACTTTGGTTTTGGCACCCGTTTTATGCAGCGATTTTGACATTGGTGAGTCTTTTTGCAGTCTGAATTGCGTTTTTCAAAGTTTAGAGGCTTACAAAAGTAGGTCAAAGTTGTCAGAGGAGTTTGAAAGTTTTACAGTATATTAAATAAAATACAGGCTTCATTTTTGTAGTTGACACTTTTTTTTGAAAATTAAGTCCTAGGGAGATATGCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>293 115 108 95 53 51 50 49 43 41 29 27 23 16 7</canonical_bands>
                <polymorphic_bands>293 115 108 95 93 53 51 49 41 29 27 23 16 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>125 115 84 59 52 49 44 43 41 40 35 28 28 27 27 25 23 21 16 16 15 15 15 15 14 13 8 7</canonical_bands>
                <polymorphic_bands>125 115 84 59 52 51 49 44 41 40 35 28 28 27 27 25 23 21 16 16 15 15 15 15 14 13 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAATTTTCAGATTTTCAGATTT</pcr_primer_p1>
		<pcr_primer_p2>TGAAATACGGTAAGCACATTC</pcr_primer_p2>
		<pcr_amplicon_size>281</pcr_amplicon_size>
		<canonical_amplicon>TGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAAATTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCA</canonical_amplicon>
		<polymorphic_amplicon>TGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAAWTTTGATTTTCAGATTTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAAATTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb525</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>62212</contig_pos>
        <strand></strand>
        <context>CAGATTTTTC[C/A]AAAAAAAAWT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTTCAGATTTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGATTTTTC</left_flank>
        <right_flank>AAAAAAAAATTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAATATTC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAGAACAATTTCTATAACCGTTTTTCCGATTTTCAGCCAAAAAATCTGAAAATTCGAAATTTGGCTATAAAAACTTTTCTAGAGGGGCTTAGGCAACAAATTCAAATGCATTCAAATTGCCAAAACACGGCAAATATTTTGACATAAAAAATTTGAGAATCTAAAAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGGAAAAATGGCTGTAAAAATTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTTTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAAATTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAAATTTGAAAATCAAAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTATCGTTATCAGTTTGGCACTTTGGTTTTGGCACCCGTTTTATGCAGCGATTTTGACATTGGTGAGTCTTTTTGCAGTCTGAATTGCGTTTTTCAAAGTTTAGAGGCTTACAAAAGTAGGTCAAAGTTGTCAGAGGAGTTTGAAAGTTTTACAGTATATTAAATAAAATACAGGCTTCATTTTTGTAGTTGACACTTTTTTTTGAAAATTAAGTCCTAGGGAGATATGCTAATTTTCCTAAAGACCAGTCAAAATTCGGAAATTTTGGTCAAAATGACATATTTCGA</canonical>
            <polymorphic>TCTAGAACAATTTCTATAACCGTTTTTCCGATTTTCAGCCAAAAAATCTGAAAATTCGAAATTTGGCTATAAAAACTTTTCTAGAGGGGCTTAGGCAACAAATTCAAATGCATTCAAATTGCCAAAACACGGCAAATATTTTGACATAAAAAATTTGAGAATCTAAAAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGGAAAAATGGCTGTAAAAATTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTTTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGATTTTTCMAAAAAAAAATTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAAATTTGAAAATCAAAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTATCGTTATCAGTTTGGCACTTTGGTTTTGGCACCCGTTTTATGCAGCGATTTTGACATTGGTGAGTCTTTTTGCAGTCTGAATTGCGTTTTTCAAAGTTTAGAGGCTTACAAAAGTAGGTCAAAGTTGTCAGAGGAGTTTGAAAGTTTTACAGTATATTAAATAAAATACAGGCTTCATTTTTGTAGTTGACACTTTTTTTTGAAAATTAAGTCCTAGGGAGATATGCTAATTTTCCTAAAGACCAGTCAAAATTCGGAAATTTTGGTCAAAATGACATATTTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGATTTTCAGATTTTTCAGAT</pcr_primer_p1>
		<pcr_primer_p2>TTGAAATACCAATCCACATCTT</pcr_primer_p2>
		<pcr_amplicon_size>206</pcr_amplicon_size>
		<canonical_amplicon>TTTGATTTTCAGATTTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAAATTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TTTGATTTTCAGATTTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGATTTTTCMAAAAAAAAATTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb526</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>62221</contig_pos>
        <strand></strand>
        <context>CMAAAAAAAA[A/T]TTTTTTAGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAA</left_flank>
        <right_flank>TTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAATATTCAGATGACTG</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCTATAACCGTTTTTCCGATTTTCAGCCAAAAAATCTGAAAATTCGAAATTTGGCTATAAAAACTTTTCTAGAGGGGCTTAGGCAACAAATTCAAATGCATTCAAATTGCCAAAACACGGCAAATATTTTGACATAAAAAATTTGAGAATCTAAAAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGGAAAAATGGCTGTAAAAATTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTTTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAAATTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAAATTTGAAAATCAAAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTATCGTTATCAGTTTGGCACTTTGGTTTTGGCACCCGTTTTATGCAGCGATTTTGACATTGGTGAGTCTTTTTGCAGTCTGAATTGCGTTTTTCAAAGTTTAGAGGCTTACAAAAGTAGGTCAAAGTTGTCAGAGGAGTTTGAAAGTTTTACAGTATATTAAATAAAATACAGGCTTCATTTTTGTAGTTGACACTTTTTTTTGAAAATTAAGTCCTAGGGAGATATGCTAATTTTCCTAAAGACCAGTCAAAATTCGGAAATTTTGGTCAAAATGACATATTTCGATTGTCTGAA</canonical>
            <polymorphic>ATTTCTATAACCGTTTTTCCGATTTTCAGCCAAAAAATCTGAAAATTCGAAATTTGGCTATAAAAACTTTTCTAGAGGGGCTTAGGCAACAAATTCAAATGCATTCAAATTGCCAAAACACGGCAAATATTTTGACATAAAAAATTTGAGAATCTAAAAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGGAAAAATGGCTGTAAAAATTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTTTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAAWTTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAAATTTGAAAATCAAAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTATCGTTATCAGTTTGGCACTTTGGTTTTGGCACCCGTTTTATGCAGCGATTTTGACATTGGTGAGTCTTTTTGCAGTCTGAATTGCGTTTTTCAAAGTTTAGAGGCTTACAAAAGTAGGTCAAAGTTGTCAGAGGAGTTTGAAAGTTTTACAGTATATTAAATAAAATACAGGCTTCATTTTTGTAGTTGACACTTTTTTTTGAAAATTAAGTCCTAGGGAGATATGCTAATTTTCCTAAAGACCAGTCAAAATTCGGAAATTTTGGTCAAAATGACATATTTCGATTGTCTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>314 115 95 53 51 50 49 43 43 41 36 29 27 23 16 8 7</canonical_bands>
                <polymorphic_bands>314 115 95 53 52 51 50 49 43 43 41 36 27 16 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>125 115 84 59 52 49 43 43 41 40 36 35 28 27 27 24 23 22 16 16 15 15 15 14 13 8 8 7</canonical_bands>
                <polymorphic_bands>125 115 84 59 52 49 43 43 41 40 38 36 35 28 27 27 24 22 16 16 15 15 14 13 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGATTTTCAGATTTTTCAGAT</pcr_primer_p1>
		<pcr_primer_p2>TTGAAATACCAATCCACATCTT</pcr_primer_p2>
		<pcr_amplicon_size>206</pcr_amplicon_size>
		<canonical_amplicon>TTTGATTTTCAGATTTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAAATTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TTTGATTTTCAGATTTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAAWTTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb527</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>62244</contig_pos>
        <strand></strand>
        <context>CAATTTTTTC[A/C]AAAAAATTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAAAATTTCAGATTTTTCCAAAAAAAAATTTTTTAGACCCCAATTTTTTC</left_flank>
        <right_flank>AAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAGCCAAAAAATCTGAAAATTCGAAATTTGGCTATAAAAACTTTTCTAGAGGGGCTTAGGCAACAAATTCAAATGCATTCAAATTGCCAAAACACGGCAAATATTTTGACATAAAAAATTTGAGAATCTAAAAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGGAAAAATGGCTGTAAAAATTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTTTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAAATTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAAATTTGAAAATCAAAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTATCGTTATCAGTTTGGCACTTTGGTTTTGGCACCCGTTTTATGCAGCGATTTTGACATTGGTGAGTCTTTTTGCAGTCTGAATTGCGTTTTTCAAAGTTTAGAGGCTTACAAAAGTAGGTCAAAGTTGTCAGAGGAGTTTGAAAGTTTTACAGTATATTAAATAAAATACAGGCTTCATTTTTGTAGTTGACACTTTTTTTTGAAAATTAAGTCCTAGGGAGATATGCTAATTTTCCTAAAGACCAGTCAAAATTCGGAAATTTTGGTCAAAATGACATATTTCGATTGTCTGAAAATCTAGGTCAAACTTTTTCGAT</canonical>
            <polymorphic>TTTCAGCCAAAAAATCTGAAAATTCGAAATTTGGCTATAAAAACTTTTCTAGAGGGGCTTAGGCAACAAATTCAAATGCATTCAAATTGCCAAAACACGGCAAATATTTTGACATAAAAAATTTGAGAATCTAAAAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGGAAAAATGGCTGTAAAAATTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTTTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAAATTTTTTAGACCCCAATTTTTTCMAAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAAATTTGAAAATCAAAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTATCGTTATCAGTTTGGCACTTTGGTTTTGGCACCCGTTTTATGCAGCGATTTTGACATTGGTGAGTCTTTTTGCAGTCTGAATTGCGTTTTTCAAAGTTTAGAGGCTTACAAAAGTAGGTCAAAGTTGTCAGAGGAGTTTGAAAGTTTTACAGTATATTAAATAAAATACAGGCTTCATTTTTGTAGTTGACACTTTTTTTTGAAAATTAAGTCCTAGGGAGATATGCTAATTTTCCTAAAGACCAGTCAAAATTCGGAAATTTTGGTCAAAATGACATATTTCGATTGTCTGAAAATCTAGGTCAAACTTTTTCGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCAAAAATCAAAATTTCAG</pcr_primer_p1>
		<pcr_primer_p2>AAACTGATAACGATAATTGTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>GCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAAATTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAAATTTGAAAATCAAAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTATCGTTATCAGTTT</canonical_amplicon>
		<polymorphic_amplicon>GCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAAATTTTTTAGACCCCAATTTTTTCMAAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAAATTTGAAAATCAAAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTATCGTTATCAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb528</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>62364</contig_pos>
        <strand>+</strand>
        <context>GTATTTCAAA[A/C]ATTTGAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAA</left_flank>
        <right_flank>ATTTGAAAATCAAAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTGAGAATCTAAAAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGGAAAAATGGCTGTAAAAATTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTTTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAAATTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAAATTTGAAAATCAAAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTATCGTTATCAGTTTGGCACTTTGGTTTTGGCACCCGTTTTATGCAGCGATTTTGACATTGGTGAGTCTTTTTGCAGTCTGAATTGCGTTTTTCAAAGTTTAGAGGCTTACAAAAGTAGGTCAAAGTTGTCAGAGGAGTTTGAAAGTTTTACAGTATATTAAATAAAATACAGGCTTCATTTTTGTAGTTGACACTTTTTTTTGAAAATTAAGTCCTAGGGAGATATGCTAATTTTCCTAAAGACCAGTCAAAATTCGGAAATTTTGGTCAAAATGACATATTTCGATTGTCTGAAAATCTAGGTCAAACTTTTTCGATTTGTCTGAAAATTTCAGAGTACACTAAACAAAACAAGAGGTTTCTTTTTTTAGCTGACAACTTTTTTGAAAAATCAAGTCCTAGAGAGATACGCCACGTGGAAGCGGGCTACCTCTCCTA</canonical>
            <polymorphic>ATTTGAGAATCTAAAAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGGAAAAATGGCTGTAAAAATTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTTTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAAATTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAMATTTGAAAATCAAAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTATCGTTATCAGTTTGGCACTTTGGTTTTGGCACCCGTTTTATGCAGCGATTTTGACATTGGTGAGTCTTTTTGCAGTCTGAATTGCGTTTTTCAAAGTTTAGAGGCTTACAAAAGTAGGTCAAAGTTGTCAGAGGAGTTTGAAAGTTTTACAGTATATTAAATAAAATACAGGCTTCATTTTTGTAGTTGACACTTTTTTTTGAAAATTAAGTCCTAGGGAGATATGCTAATTTTCCTAAAGACCAGTCAAAATTCGGAAATTTTGGTCAAAATGACATATTTCGATTGTCTGAAAATCTAGGTCAAACTTTTTCGATTTGTCTGAAAATTTCAGAGTACACTAAACAAAACAAGAGGTTTCTTTTTTTAGCTGACAACTTTTTTGAAAAATCAAGTCCTAGAGAGATACGCCACGTGGAAGCGGGCTACCTCTCCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>314 115 111 95 68 53 50 49 43 29 27 23 15 8</canonical_bands>
                <polymorphic_bands>429 111 95 68 53 50 49 43 29 27 23 15 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>125 115 111 84 68 59 52 49 43 40 28 27 27 24 23 22 15 15 15 15 14 13 8 8</canonical_bands>
                <polymorphic_bands>174 125 111 84 68 52 49 43 40 28 27 27 24 23 22 15 15 15 15 14 13 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGTGCTTACCGTATTTCAAG</pcr_primer_p1>
		<pcr_primer_p2>AATTCAGACTGCAAAAAGACTC</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>AATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAAATTTGAAAATCAAAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTATCGTTATCAGTTTGGCACTTTGGTTTTGGCACCCGTTTTATGCAGCGATTTTGACATTGGTGAGTCTTTTTGCAGTCTGAATT</canonical_amplicon>
		<polymorphic_amplicon>AATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAMATTTGAAAATCAAAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTATCGTTATCAGTTTGGCACTTTGGTTTTGGCACCCGTTTTATGCAGCGATTTTGACATTGGTGAGTCTTTTTGCAGTCTGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb529</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>62377</contig_pos>
        <strand>+</strand>
        <context>TTGAAAATCA[A/G]AATCCCTGCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAAATTTGAAAATCA</left_flank>
        <right_flank>AATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGGAAAAATGGCTGTAAAAATTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTTTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAAATTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAAATTTGAAAATCAAAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTATCGTTATCAGTTTGGCACTTTGGTTTTGGCACCCGTTTTATGCAGCGATTTTGACATTGGTGAGTCTTTTTGCAGTCTGAATTGCGTTTTTCAAAGTTTAGAGGCTTACAAAAGTAGGTCAAAGTTGTCAGAGGAGTTTGAAAGTTTTACAGTATATTAAATAAAATACAGGCTTCATTTTTGTAGTTGACACTTTTTTTTGAAAATTAAGTCCTAGGGAGATATGCTAATTTTCCTAAAGACCAGTCAAAATTCGGAAATTTTGGTCAAAATGACATATTTCGATTGTCTGAAAATCTAGGTCAAACTTTTTCGATTTGTCTGAAAATTTCAGAGTACACTAAACAAAACAAGAGGTTTCTTTTTTTAGCTGACAACTTTTTTGAAAAATCAAGTCCTAGAGAGATACGCCACGTGGAAGCGGGCTACCTCTCCTAGGCTCCAGGCTTC</canonical>
            <polymorphic>AAAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGGAAAAATGGCTGTAAAAATTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTTTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAAATTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAAATTTGAAAATCARAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTATCGTTATCAGTTTGGCACTTTGGTTTTGGCACCCGTTTTATGCAGCGATTTTGACATTGGTGAGTCTTTTTGCAGTCTGAATTGCGTTTTTCAAAGTTTAGAGGCTTACAAAAGTAGGTCAAAGTTGTCAGAGGAGTTTGAAAGTTTTACAGTATATTAAATAAAATACAGGCTTCATTTTTGTAGTTGACACTTTTTTTTGAAAATTAAGTCCTAGGGAGATATGCTAATTTTCCTAAAGACCAGTCAAAATTCGGAAATTTTGGTCAAAATGACATATTTCGATTGTCTGAAAATCTAGGTCAAACTTTTTCGATTTGTCTGAAAATTTCAGAGTACACTAAACAAAACAAGAGGTTTCTTTTTTTAGCTGACAACTTTTTTGAAAAATCAAGTCCTAGAGAGATACGCCACGTGGAAGCGGGCTACCTCTCCTAGGCTCCAGGCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTGCTTACCGTATTTCAAG</pcr_primer_p1>
		<pcr_primer_p2>AATTCAGACTGCAAAAAGACTC</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>AATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAAATTTGAAAATCAAAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTATCGTTATCAGTTTGGCACTTTGGTTTTGGCACCCGTTTTATGCAGCGATTTTGACATTGGTGAGTCTTTTTGCAGTCTGAATT</canonical_amplicon>
		<polymorphic_amplicon>AATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAAATTTGAAAATCARAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTATCGTTATCAGTTTGGCACTTTGGTTTTGGCACCCGTTTTATGCAGCGATTTTGACATTGGTGAGTCTTTTTGCAGTCTGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb530</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>63424</contig_pos>
        <strand></strand>
        <context>CGTGGAARGC[G/C]TATAAGAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CTTTGCCGCCTGCGCTACAACGGACACACCCCGTAGACAGCGTGGAAAGC</left_flank>
        <right_flank>TATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAAGGGGGAGGGTGGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTACAAAAATGAAGCTCAGGTCGTGTTTAGTATAATCTGAAACTTCCAGACAAAATGAAATGGTTTGCGCTAAGTTTTCAGACAGCCGAAAAATGATATTTTTGACCGAAATTTCAATTTTTCACTTATTTTGGGAATTGGGCTATATCTCCCCAAAACATGATTTTCCAAAAGAAGTGTTAACTACAAACATGTAGCTCTAGTGCTGTTTAGTATGCCCTGTAATTTTCAGACAAATCTGACTACTCTGATATCCTTCTATCACAGTAGTTCTGTAACTCCCTGAAAACGCTGGAAAATCATCTTTTTCATGCCCAAAATTCAAGGAAACCTCAAAATTTTGATGTTTTATCTTTGTTAGAGCCTTAACAAAGCTCTAAGAAAAGAAAAAAAACAAAAAACCACCCAAGGGGGTCGAACCCCAGAGTGTCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTACAACGGACACACCCCGTAGACAGCGTGGAAAGCGTATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAAGGGGGAGGGTGGATTTTCAGAATTTTTTAATTTAAAAAAATTCAAAAATTCAAATTACTGTAACTTTTACAGTTTTAGACGGATTTTTGTGATTTTTATACTAAATTTTTTGCAGTGTATCCTTGTCTTGTACTCCTACACCTTCCTGGACCTGCTCCAGAAGCGTCTAGAAGAGATCTACGAGGTCAGCGAAGTCATGTACAAGCAAATGGATTATTTCTTAAAATTGCAAAAATTCCAAGAAGAAAGTGGAGATTTCTATATTGTCGACGATGTCGAAGTAGAAGAAGAAGCGGGAAATTCAAAAAGTCCAATAAATCCAAAAGTAGATGGAGTTTTTAAAAATCCCTTTAATTGGTCCAGATGCATGTTCTTGATTGGGGTACTTTTGATAGAGAGTCAATGGATCGGATGGGATTATTTTGCGGTATGATTATTGATTTTTTTGAGCTAGGAATTTTGA</canonical>
            <polymorphic>ACTACAAAAATGAAGCTCAGGTCGTGTTTAGTATAATCTGAAACTTCCAGACAAAATGAAATGGTTTGCGCTAAGTTTTCAGACAGCCGAAAAATGATATTTTTGACCGAAATTTCAATTTTTCACTTATTTTGGGAATTGGGCTATATCTCCCCAAAACATGATTTTCCAAAAGAAGTGTTAACTACAAACATGTAGCTCTAGTGCTGTTTAGTATGCCCTGTAATTTTCAGACAAATCTGACTACTCTGATATCCTTCTATCACAGTAGTTCTGTAACTCCCTGAAAACGCTGGAAAATCATCTTTTTCATGCCCAAAATTCAAGGAAACCTCAAAATTTTGATGTTTTATCTTTGTTAGAGCCTTAACAAAGCTCTAAGAAAAGAAAAAAAACAAAAAACCACCCAAGGGGGTCGAACCCCAGAGTGTCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTACAACGGACACACCCCGTAGACAGCGTGGAAAGCSTATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAAGGGGGAGGGTGGATTTTCAGAATTTTTTAATTTAAAAAAATTCAAAAATTCAAATTACTGTAACTTTTACAGTTTTAGACGGATTTTTGTGATTTTTATACTAAATTTTTTGCAGTGTATCCTTGTCTTGTACTCCTACACCTTCCTGGACCTGCTCCAGAAGCGTCTAGAAGAGATCTACGAGGTCAGCGAAGTCATGTACAAGCAAATGGATTATTTCTTAAAATTGCAAAAATTCCAAGAAGAAAGTGGAGATTTCTATATTGTCGACGATGTCGAAGTAGAAGAAGAAGCGGGAAATTCAAAAAGTCCAATAAATCCAAAAGTAGATGGAGTTTTTAAAAATCCCTTTAATTGGTCCAGATGCATGTTCTTGATTGGGGTACTTTTGATAGAGAGTCAATGGATCGGATGGGATTATTTTGCGGTATGATTATTGATTTTTTTGAGCTAGGAATTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGTGTCGGATTCAAAACA</pcr_primer_p1>
		<pcr_primer_p2>AGTACAAGACAAGGATACACTGC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGAGTGTCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTACAACGGACACACCCCGTAGACAGCGTGGAAAGCGTATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAAGGGGGAGGGTGGATTTTCAGAATTTTTTAATTTAAAAAAATTCAAAAATTCAAATTACTGTAACTTTTACAGTTTTAGACGGATTTTTGTGATTTTTATACTAAATTTTTTGCAGTGTATCCTTGTCTTGTACT</canonical_amplicon>
		<polymorphic_amplicon>AGAGTGTCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTACAACGGACACACCCCGTAGACAGCGTGGAAAGCSTATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAAGGGGGAGGGTGGATTTTCAGAATTTTTTAATTTAAAAAAATTCAAAAATTCAAATTACTGTAACTTTTACAGTTTTAGACGGATTTTTGTGATTTTTATACTAAATTTTTTGCAGTGTATCCTTGTCTTGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb531</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>63421</contig_pos>
        <strand></strand>
        <context>SAGCGTGGAA[A/G]GCSTATAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGCTTTGCCGCCTGCGCTACAACGGACACACCCCGTAGACAGCGTGGAA</left_flank>
        <right_flank>GCGTATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAAGGGGGAGGGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAACTACAAAAATGAAGCTCAGGTCGTGTTTAGTATAATCTGAAACTTCCAGACAAAATGAAATGGTTTGCGCTAAGTTTTCAGACAGCCGAAAAATGATATTTTTGACCGAAATTTCAATTTTTCACTTATTTTGGGAATTGGGCTATATCTCCCCAAAACATGATTTTCCAAAAGAAGTGTTAACTACAAACATGTAGCTCTAGTGCTGTTTAGTATGCCCTGTAATTTTCAGACAAATCTGACTACTCTGATATCCTTCTATCACAGTAGTTCTGTAACTCCCTGAAAACGCTGGAAAATCATCTTTTTCATGCCCAAAATTCAAGGAAACCTCAAAATTTTGATGTTTTATCTTTGTTAGAGCCTTAACAAAGCTCTAAGAAAAGAAAAAAAACAAAAAACCACCCAAGGGGGTCGAACCCCAGAGTGTCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTACAACGGACACACCCCGTAGACAGCGTGGAAAGCGTATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAAGGGGGAGGGTGGATTTTCAGAATTTTTTAATTTAAAAAAATTCAAAAATTCAAATTACTGTAACTTTTACAGTTTTAGACGGATTTTTGTGATTTTTATACTAAATTTTTTGCAGTGTATCCTTGTCTTGTACTCCTACACCTTCCTGGACCTGCTCCAGAAGCGTCTAGAAGAGATCTACGAGGTCAGCGAAGTCATGTACAAGCAAATGGATTATTTCTTAAAATTGCAAAAATTCCAAGAAGAAAGTGGAGATTTCTATATTGTCGACGATGTCGAAGTAGAAGAAGAAGCGGGAAATTCAAAAAGTCCAATAAATCCAAAAGTAGATGGAGTTTTTAAAAATCCCTTTAATTGGTCCAGATGCATGTTCTTGATTGGGGTACTTTTGATAGAGAGTCAATGGATCGGATGGGATTATTTTGCGGTATGATTATTGATTTTTTTGAGCTAGGAATTT</canonical>
            <polymorphic>TCAACTACAAAAATGAAGCTCAGGTCGTGTTTAGTATAATCTGAAACTTCCAGACAAAATGAAATGGTTTGCGCTAAGTTTTCAGACAGCCGAAAAATGATATTTTTGACCGAAATTTCAATTTTTCACTTATTTTGGGAATTGGGCTATATCTCCCCAAAACATGATTTTCCAAAAGAAGTGTTAACTACAAACATGTAGCTCTAGTGCTGTTTAGTATGCCCTGTAATTTTCAGACAAATCTGACTACTCTGATATCCTTCTATCACAGTAGTTCTGTAACTCCCTGAAAACGCTGGAAAATCATCTTTTTCATGCCCAAAATTCAAGGAAACCTCAAAATTTTGATGTTTTATCTTTGTTAGAGCCTTAACAAAGCTCTAAGAAAAGAAAAAAAACAAAAAACCACCCAAGGGGGTCGAACCCCAGAGTGTCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTACAACGGACACACCCCGTAGACAGCGTGGAARGCGTATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAAGGGGGAGGGTGGATTTTCAGAATTTTTTAATTTAAAAAAATTCAAAAATTCAAATTACTGTAACTTTTACAGTTTTAGACGGATTTTTGTGATTTTTATACTAAATTTTTTGCAGTGTATCCTTGTCTTGTACTCCTACACCTTCCTGGACCTGCTCCAGAAGCGTCTAGAAGAGATCTACGAGGTCAGCGAAGTCATGTACAAGCAAATGGATTATTTCTTAAAATTGCAAAAATTCCAAGAAGAAAGTGGAGATTTCTATATTGTCGACGATGTCGAAGTAGAAGAAGAAGCGGGAAATTCAAAAAGTCCAATAAATCCAAAAGTAGATGGAGTTTTTAAAAATCCCTTTAATTGGTCCAGATGCATGTTCTTGATTGGGGTACTTTTGATAGAGAGTCAATGGATCGGATGGGATTATTTTGCGGTATGATTATTGATTTTTTTGAGCTAGGAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGTGTCGGATTCAAAACA</pcr_primer_p1>
		<pcr_primer_p2>AGTACAAGACAAGGATACACTGC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGAGTGTCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTACAACGGACACACCCCGTAGACAGCGTGGAAAGCGTATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAAGGGGGAGGGTGGATTTTCAGAATTTTTTAATTTAAAAAAATTCAAAAATTCAAATTACTGTAACTTTTACAGTTTTAGACGGATTTTTGTGATTTTTATACTAAATTTTTTGCAGTGTATCCTTGTCTTGTACT</canonical_amplicon>
		<polymorphic_amplicon>AGAGTGTCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTACAACGGACACACCCCGTAGACAGCGTGGAARGCGTATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAAGGGGGAGGGTGGATTTTCAGAATTTTTTAATTTAAAAAAATTCAAAAATTCAAATTACTGTAACTTTTACAGTTTTAGACGGATTTTTGTGATTTTTATACTAAATTTTTTGCAGTGTATCCTTGTCTTGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb532</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>63411</contig_pos>
        <strand></strand>
        <context>ACCCYGTAGA[C/G]AGCGTGGAAR</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCAAAACAAGATGCTTTGCCGCCTGCGCTACAACGGACACACCCCGTAGA</left_flank>
        <right_flank>AGCGTGGAAAGCGTATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAGGTGTCAACTACAAAAATGAAGCTCAGGTCGTGTTTAGTATAATCTGAAACTTCCAGACAAAATGAAATGGTTTGCGCTAAGTTTTCAGACAGCCGAAAAATGATATTTTTGACCGAAATTTCAATTTTTCACTTATTTTGGGAATTGGGCTATATCTCCCCAAAACATGATTTTCCAAAAGAAGTGTTAACTACAAACATGTAGCTCTAGTGCTGTTTAGTATGCCCTGTAATTTTCAGACAAATCTGACTACTCTGATATCCTTCTATCACAGTAGTTCTGTAACTCCCTGAAAACGCTGGAAAATCATCTTTTTCATGCCCAAAATTCAAGGAAACCTCAAAATTTTGATGTTTTATCTTTGTTAGAGCCTTAACAAAGCTCTAAGAAAAGAAAAAAAACAAAAAACCACCCAAGGGGGTCGAACCCCAGAGTGTCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTACAACGGACACACCCCGTAGACAGCGTGGAAAGCGTATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAAGGGGGAGGGTGGATTTTCAGAATTTTTTAATTTAAAAAAATTCAAAAATTCAAATTACTGTAACTTTTACAGTTTTAGACGGATTTTTGTGATTTTTATACTAAATTTTTTGCAGTGTATCCTTGTCTTGTACTCCTACACCTTCCTGGACCTGCTCCAGAAGCGTCTAGAAGAGATCTACGAGGTCAGCGAAGTCATGTACAAGCAAATGGATTATTTCTTAAAATTGCAAAAATTCCAAGAAGAAAGTGGAGATTTCTATATTGTCGACGATGTCGAAGTAGAAGAAGAAGCGGGAAATTCAAAAAGTCCAATAAATCCAAAAGTAGATGGAGTTTTTAAAAATCCCTTTAATTGGTCCAGATGCATGTTCTTGATTGGGGTACTTTTGATAGAGAGTCAATGGATCGGATGGGATTATTTTGCGGTATGATTATTGATTTTTTTGAG</canonical>
            <polymorphic>AAAAAAGGTGTCAACTACAAAAATGAAGCTCAGGTCGTGTTTAGTATAATCTGAAACTTCCAGACAAAATGAAATGGTTTGCGCTAAGTTTTCAGACAGCCGAAAAATGATATTTTTGACCGAAATTTCAATTTTTCACTTATTTTGGGAATTGGGCTATATCTCCCCAAAACATGATTTTCCAAAAGAAGTGTTAACTACAAACATGTAGCTCTAGTGCTGTTTAGTATGCCCTGTAATTTTCAGACAAATCTGACTACTCTGATATCCTTCTATCACAGTAGTTCTGTAACTCCCTGAAAACGCTGGAAAATCATCTTTTTCATGCCCAAAATTCAAGGAAACCTCAAAATTTTGATGTTTTATCTTTGTTAGAGCCTTAACAAAGCTCTAAGAAAAGAAAAAAAACAAAAAACCACCCAAGGGGGTCGAACCCCAGAGTGTCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTACAACGGACACACCCCGTAGASAGCGTGGAAAGCGTATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAAGGGGGAGGGTGGATTTTCAGAATTTTTTAATTTAAAAAAATTCAAAAATTCAAATTACTGTAACTTTTACAGTTTTAGACGGATTTTTGTGATTTTTATACTAAATTTTTTGCAGTGTATCCTTGTCTTGTACTCCTACACCTTCCTGGACCTGCTCCAGAAGCGTCTAGAAGAGATCTACGAGGTCAGCGAAGTCATGTACAAGCAAATGGATTATTTCTTAAAATTGCAAAAATTCCAAGAAGAAAGTGGAGATTTCTATATTGTCGACGATGTCGAAGTAGAAGAAGAAGCGGGAAATTCAAAAAGTCCAATAAATCCAAAAGTAGATGGAGTTTTTAAAAATCCCTTTAATTGGTCCAGATGCATGTTCTTGATTGGGGTACTTTTGATAGAGAGTCAATGGATCGGATGGGATTATTTTGCGGTATGATTATTGATTTTTTTGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>496 321 183</canonical_bands>
                <polymorphic_bands>817 183</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>321 302 183 182 12</canonical_bands>
                <polymorphic_bands>623 183 182 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGTGTCGGATTCAAAACA</pcr_primer_p1>
		<pcr_primer_p2>AGTACAAGACAAGGATACACTGC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGAGTGTCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTACAACGGACACACCCCGTAGACAGCGTGGAAAGCGTATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAAGGGGGAGGGTGGATTTTCAGAATTTTTTAATTTAAAAAAATTCAAAAATTCAAATTACTGTAACTTTTACAGTTTTAGACGGATTTTTGTGATTTTTATACTAAATTTTTTGCAGTGTATCCTTGTCTTGTACT</canonical_amplicon>
		<polymorphic_amplicon>AGAGTGTCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTACAACGGACACACCCCGTAGASAGCGTGGAAAGCGTATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAAGGGGGAGGGTGGATTTTCAGAATTTTTTAATTTAAAAAAATTCAAAAATTCAAATTACTGTAACTTTTACAGTTTTAGACGGATTTTTGTGATTTTTATACTAAATTTTTTGCAGTGTATCCTTGTCTTGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb533</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>63405</contig_pos>
        <strand></strand>
        <context>GGACACACCC[C/T]GTAGASAGCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTACAACGGACACACCC</left_flank>
        <right_flank>GTAGACAGCGTGGAAAGCGTATAAGAAGAGGGAGGGTGGTGGCGCCGGGC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCAAAAAAGGTGTCAACTACAAAAATGAAGCTCAGGTCGTGTTTAGTATAATCTGAAACTTCCAGACAAAATGAAATGGTTTGCGCTAAGTTTTCAGACAGCCGAAAAATGATATTTTTGACCGAAATTTCAATTTTTCACTTATTTTGGGAATTGGGCTATATCTCCCCAAAACATGATTTTCCAAAAGAAGTGTTAACTACAAACATGTAGCTCTAGTGCTGTTTAGTATGCCCTGTAATTTTCAGACAAATCTGACTACTCTGATATCCTTCTATCACAGTAGTTCTGTAACTCCCTGAAAACGCTGGAAAATCATCTTTTTCATGCCCAAAATTCAAGGAAACCTCAAAATTTTGATGTTTTATCTTTGTTAGAGCCTTAACAAAGCTCTAAGAAAAGAAAAAAAACAAAAAACCACCCAAGGGGGTCGAACCCCAGAGTGTCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTACAACGGACACACCCCGTAGACAGCGTGGAAAGCGTATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAAGGGGGAGGGTGGATTTTCAGAATTTTTTAATTTAAAAAAATTCAAAAATTCAAATTACTGTAACTTTTACAGTTTTAGACGGATTTTTGTGATTTTTATACTAAATTTTTTGCAGTGTATCCTTGTCTTGTACTCCTACACCTTCCTGGACCTGCTCCAGAAGCGTCTAGAAGAGATCTACGAGGTCAGCGAAGTCATGTACAAGCAAATGGATTATTTCTTAAAATTGCAAAAATTCCAAGAAGAAAGTGGAGATTTCTATATTGTCGACGATGTCGAAGTAGAAGAAGAAGCGGGAAATTCAAAAAGTCCAATAAATCCAAAAGTAGATGGAGTTTTTAAAAATCCCTTTAATTGGTCCAGATGCATGTTCTTGATTGGGGTACTTTTGATAGAGAGTCAATGGATCGGATGGGATTATTTTGCGGTATGATTATTGATTTT</canonical>
            <polymorphic>TTTTTCAAAAAAGGTGTCAACTACAAAAATGAAGCTCAGGTCGTGTTTAGTATAATCTGAAACTTCCAGACAAAATGAAATGGTTTGCGCTAAGTTTTCAGACAGCCGAAAAATGATATTTTTGACCGAAATTTCAATTTTTCACTTATTTTGGGAATTGGGCTATATCTCCCCAAAACATGATTTTCCAAAAGAAGTGTTAACTACAAACATGTAGCTCTAGTGCTGTTTAGTATGCCCTGTAATTTTCAGACAAATCTGACTACTCTGATATCCTTCTATCACAGTAGTTCTGTAACTCCCTGAAAACGCTGGAAAATCATCTTTTTCATGCCCAAAATTCAAGGAAACCTCAAAATTTTGATGTTTTATCTTTGTTAGAGCCTTAACAAAGCTCTAAGAAAAGAAAAAAAACAAAAAACCACCCAAGGGGGTCGAACCCCAGAGTGTCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTACAACGGACACACCCYGTAGACAGCGTGGAAAGCGTATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAAGGGGGAGGGTGGATTTTCAGAATTTTTTAATTTAAAAAAATTCAAAAATTCAAATTACTGTAACTTTTACAGTTTTAGACGGATTTTTGTGATTTTTATACTAAATTTTTTGCAGTGTATCCTTGTCTTGTACTCCTACACCTTCCTGGACCTGCTCCAGAAGCGTCTAGAAGAGATCTACGAGGTCAGCGAAGTCATGTACAAGCAAATGGATTATTTCTTAAAATTGCAAAAATTCCAAGAAGAAAGTGGAGATTTCTATATTGTCGACGATGTCGAAGTAGAAGAAGAAGCGGGAAATTCAAAAAGTCCAATAAATCCAAAAGTAGATGGAGTTTTTAAAAATCCCTTTAATTGGTCCAGATGCATGTTCTTGATTGGGGTACTTTTGATAGAGAGTCAATGGATCGGATGGGATTATTTTGCGGTATGATTATTGATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGTGTCGGATTCAAAACA</pcr_primer_p1>
		<pcr_primer_p2>AGTACAAGACAAGGATACACTGC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGAGTGTCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTACAACGGACACACCCCGTAGACAGCGTGGAAAGCGTATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAAGGGGGAGGGTGGATTTTCAGAATTTTTTAATTTAAAAAAATTCAAAAATTCAAATTACTGTAACTTTTACAGTTTTAGACGGATTTTTGTGATTTTTATACTAAATTTTTTGCAGTGTATCCTTGTCTTGTACT</canonical_amplicon>
		<polymorphic_amplicon>AGAGTGTCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTACAACGGACACACCCYGTAGACAGCGTGGAAAGCGTATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAAGGGGGAGGGTGGATTTTCAGAATTTTTTAATTTAAAAAAATTCAAAAATTCAAATTACTGTAACTTTTACAGTTTTAGACGGATTTTTGTGATTTTTATACTAAATTTTTTGCAGTGTATCCTTGTCTTGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb534</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>63392</contig_pos>
        <strand></strand>
        <context>CCTGCGCTAC[A/G]ACGGACACAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAACCCCAGAGTGTCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTAC</left_flank>
        <right_flank>ACGGACACACCCCGTAGACAGCGTGGAAAGCGTATAAGAAGAGGGAGGGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCTAGGACTTGATTTTTCAAAAAAGGTGTCAACTACAAAAATGAAGCTCAGGTCGTGTTTAGTATAATCTGAAACTTCCAGACAAAATGAAATGGTTTGCGCTAAGTTTTCAGACAGCCGAAAAATGATATTTTTGACCGAAATTTCAATTTTTCACTTATTTTGGGAATTGGGCTATATCTCCCCAAAACATGATTTTCCAAAAGAAGTGTTAACTACAAACATGTAGCTCTAGTGCTGTTTAGTATGCCCTGTAATTTTCAGACAAATCTGACTACTCTGATATCCTTCTATCACAGTAGTTCTGTAACTCCCTGAAAACGCTGGAAAATCATCTTTTTCATGCCCAAAATTCAAGGAAACCTCAAAATTTTGATGTTTTATCTTTGTTAGAGCCTTAACAAAGCTCTAAGAAAAGAAAAAAAACAAAAAACCACCCAAGGGGGTCGAACCCCAGAGTGTCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTACAACGGACACACCCCGTAGACAGCGTGGAAAGCGTATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAAGGGGGAGGGTGGATTTTCAGAATTTTTTAATTTAAAAAAATTCAAAAATTCAAATTACTGTAACTTTTACAGTTTTAGACGGATTTTTGTGATTTTTATACTAAATTTTTTGCAGTGTATCCTTGTCTTGTACTCCTACACCTTCCTGGACCTGCTCCAGAAGCGTCTAGAAGAGATCTACGAGGTCAGCGAAGTCATGTACAAGCAAATGGATTATTTCTTAAAATTGCAAAAATTCCAAGAAGAAAGTGGAGATTTCTATATTGTCGACGATGTCGAAGTAGAAGAAGAAGCGGGAAATTCAAAAAGTCCAATAAATCCAAAAGTAGATGGAGTTTTTAAAAATCCCTTTAATTGGTCCAGATGCATGTTCTTGATTGGGGTACTTTTGATAGAGAGTCAATGGATCGGATGGGATTATTTTGCGGTAT</canonical>
            <polymorphic>CCCTAGGACTTGATTTTTCAAAAAAGGTGTCAACTACAAAAATGAAGCTCAGGTCGTGTTTAGTATAATCTGAAACTTCCAGACAAAATGAAATGGTTTGCGCTAAGTTTTCAGACAGCCGAAAAATGATATTTTTGACCGAAATTTCAATTTTTCACTTATTTTGGGAATTGGGCTATATCTCCCCAAAACATGATTTTCCAAAAGAAGTGTTAACTACAAACATGTAGCTCTAGTGCTGTTTAGTATGCCCTGTAATTTTCAGACAAATCTGACTACTCTGATATCCTTCTATCACAGTAGTTCTGTAACTCCCTGAAAACGCTGGAAAATCATCTTTTTCATGCCCAAAATTCAAGGAAACCTCAAAATTTTGATGTTTTATCTTTGTTAGAGCCTTAACAAAGCTCTAAGAAAAGAAAAAAAACAAAAAACCACCCAAGGGGGTCGAACCCCAGAGTGTCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTACRACGGACACACCCCGTAGACAGCGTGGAAAGCGTATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAAGGGGGAGGGTGGATTTTCAGAATTTTTTAATTTAAAAAAATTCAAAAATTCAAATTACTGTAACTTTTACAGTTTTAGACGGATTTTTGTGATTTTTATACTAAATTTTTTGCAGTGTATCCTTGTCTTGTACTCCTACACCTTCCTGGACCTGCTCCAGAAGCGTCTAGAAGAGATCTACGAGGTCAGCGAAGTCATGTACAAGCAAATGGATTATTTCTTAAAATTGCAAAAATTCCAAGAAGAAAGTGGAGATTTCTATATTGTCGACGATGTCGAAGTAGAAGAAGAAGCGGGAAATTCAAAAAGTCCAATAAATCCAAAAGTAGATGGAGTTTTTAAAAATCCCTTTAATTGGTCCAGATGCATGTTCTTGATTGGGGTACTTTTGATAGAGAGTCAATGGATCGGATGGGATTATTTTGCGGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAAAGCTCTAAGAAAAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAATCCGTCTAAAACTGTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AACAAAGCTCTAAGAAAAGAAAAAAAACAAAAAACCACCCAAGGGGGTCGAACCCCAGAGTGTCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTACAACGGACACACCCCGTAGACAGCGTGGAAAGCGTATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAAGGGGGAGGGTGGATTTTCAGAATTTTTTAATTTAAAAAAATTCAAAAATTCAAATTACTGTAACTTTTACAGTTTTAGACGGATTTT</canonical_amplicon>
		<polymorphic_amplicon>AACAAAGCTCTAAGAAAAGAAAAAAAACAAAAAACCACCCAAGGGGGTCGAACCCCAGAGTGTCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTACRACGGACACACCCCGTAGACAGCGTGGAAAGCGTATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAAGGGGGAGGGTGGATTTTCAGAATTTTTTAATTTAAAAAAATTCAAAAATTCAAATTACTGTAACTTTTACAGTTTTAGACGGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb535</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>63342</contig_pos>
        <strand></strand>
        <context>CAAGGGGGTC[G/A]AACCCCAGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAACAAAGCTCTAAGAAAAGAAAAAAAACAAAAAACCACCCAAGGGGGTC</left_flank>
        <right_flank>AACCCCAGAGTGTCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTACA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAAGCGGGCTACCTCTCCTAGGCTCCAGGCTTCTGATGCGGCATATCTCCCTAGGACTTGATTTTTCAAAAAAGGTGTCAACTACAAAAATGAAGCTCAGGTCGTGTTTAGTATAATCTGAAACTTCCAGACAAAATGAAATGGTTTGCGCTAAGTTTTCAGACAGCCGAAAAATGATATTTTTGACCGAAATTTCAATTTTTCACTTATTTTGGGAATTGGGCTATATCTCCCCAAAACATGATTTTCCAAAAGAAGTGTTAACTACAAACATGTAGCTCTAGTGCTGTTTAGTATGCCCTGTAATTTTCAGACAAATCTGACTACTCTGATATCCTTCTATCACAGTAGTTCTGTAACTCCCTGAAAACGCTGGAAAATCATCTTTTTCATGCCCAAAATTCAAGGAAACCTCAAAATTTTGATGTTTTATCTTTGTTAGAGCCTTAACAAAGCTCTAAGAAAAGAAAAAAAACAAAAAACCACCCAAGGGGGTCGAACCCCAGAGTGTCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTACAACGGACACACCCCGTAGACAGCGTGGAAAGCGTATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAAGGGGGAGGGTGGATTTTCAGAATTTTTTAATTTAAAAAAATTCAAAAATTCAAATTACTGTAACTTTTACAGTTTTAGACGGATTTTTGTGATTTTTATACTAAATTTTTTGCAGTGTATCCTTGTCTTGTACTCCTACACCTTCCTGGACCTGCTCCAGAAGCGTCTAGAAGAGATCTACGAGGTCAGCGAAGTCATGTACAAGCAAATGGATTATTTCTTAAAATTGCAAAAATTCCAAGAAGAAAGTGGAGATTTCTATATTGTCGACGATGTCGAAGTAGAAGAAGAAGCGGGAAATTCAAAAAGTCCAATAAATCCAAAAGTAGATGGAGTTTTTAAAAATCCCTTTAATTGGTCCAGATGCATGTTCTTGATTGG</canonical>
            <polymorphic>TGGAAGCGGGCTACCTCTCCTAGGCTCCAGGCTTCTGATGCGGCATATCTCCCTAGGACTTGATTTTTCAAAAAAGGTGTCAACTACAAAAATGAAGCTCAGGTCGTGTTTAGTATAATCTGAAACTTCCAGACAAAATGAAATGGTTTGCGCTAAGTTTTCAGACAGCCGAAAAATGATATTTTTGACCGAAATTTCAATTTTTCACTTATTTTGGGAATTGGGCTATATCTCCCCAAAACATGATTTTCCAAAAGAAGTGTTAACTACAAACATGTAGCTCTAGTGCTGTTTAGTATGCCCTGTAATTTTCAGACAAATCTGACTACTCTGATATCCTTCTATCACAGTAGTTCTGTAACTCCCTGAAAACGCTGGAAAATCATCTTTTTCATGCCCAAAATTCAAGGAAACCTCAAAATTTTGATGTTTTATCTTTGTTAGAGCCTTAACAAAGCTCTAAGAAAAGAAAAAAAACAAAAAACCACCCAAGGGGGTCRAACCCCAGAGTGTCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTACAACGGACACACCCCGTAGACAGCGTGGAAAGCGTATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAAGGGGGAGGGTGGATTTTCAGAATTTTTTAATTTAAAAAAATTCAAAAATTCAAATTACTGTAACTTTTACAGTTTTAGACGGATTTTTGTGATTTTTATACTAAATTTTTTGCAGTGTATCCTTGTCTTGTACTCCTACACCTTCCTGGACCTGCTCCAGAAGCGTCTAGAAGAGATCTACGAGGTCAGCGAAGTCATGTACAAGCAAATGGATTATTTCTTAAAATTGCAAAAATTCCAAGAAGAAAGTGGAGATTTCTATATTGTCGACGATGTCGAAGTAGAAGAAGAAGCGGGAAATTCAAAAAGTCCAATAAATCCAAAAGTAGATGGAGTTTTTAAAAATCCCTTTAATTGGTCCAGATGCATGTTCTTGATTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 388 104 9</canonical_bands>
                <polymorphic_bands>887 104 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTAACAAAGCTCTAAGAAAAGA</pcr_primer_p1>
		<pcr_primer_p2>AAAATCCGTCTAAAACTGTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>CCTTAACAAAGCTCTAAGAAAAGAAAAAAAACAAAAAACCACCCAAGGGGGTCGAACCCCAGAGTGTCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTACAACGGACACACCCCGTAGACAGCGTGGAAAGCGTATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAAGGGGGAGGGTGGATTTTCAGAATTTTTTAATTTAAAAAAATTCAAAAATTCAAATTACTGTAACTTTTACAGTTTTAGACGGATTTT</canonical_amplicon>
		<polymorphic_amplicon>CCTTAACAAAGCTCTAAGAAAAGAAAAAAAACAAAAAACCACCCAAGGGGGTCRAACCCCAGAGTGTCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTACAACGGACACACCCCGTAGACAGCGTGGAAAGCGTATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAAGGGGGAGGGTGGATTTTCAGAATTTTTTAATTTAAAAAAATTCAAAAATTCAAATTACTGTAACTTTTACAGTTTTAGACGGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb544</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>351332</contig_pos>
        <strand></strand>
        <context>GAAAATCCTT[A/T]AAAAAWTGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTCGGAAAAAGGTCTAAAAATTTTGGGAAAAATCGTTGAAAATCCTT</left_flank>
        <right_flank>AAAAATTGGAATTTTTAAAAGTGAAAAATCGGTTTTCCAGATGAAAAATG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATTTCTGGGTCATTTTTCATCTAGAAAATCATTTTTGAAGGGATTTCCCACGATTTTTCGGCTTAATTTTTAGACCTTTTCAGGGTTTTTAGCTATTTTTGAGCATTCTTTTTCGAATTTTTCATAATTTTTTGTCTGAAATTTGACGGGATGGTGTTCGCGAAGATTACTGTAGAAACTCCTTTTGTAGTGTTTTAAACAGTGTTTATATACATTTTGACGTGGCAAAAAAGAACCACAAAAGGAAATTAGCTTCTACAGTAATCTACAGTAATCTTCACAAACACCGTCCAATCAAATTTCAGACAAAAATGGGAAAAATCGAAAAAGAATATTCAAAAATAGCTGAAAACCCGAAAAAGGTCTAAAAACTCTCGAAAAATCGCGAATTTTTCGGAATTTTCAGTTTTGGCGGGAATTCAAAAAATTTTTTAGAGATTTCGCAAGTTTTTCGGAAAAAGGTCTAAAAATTTTGGGAAAAATCGTTGAAAATCCTTAAAAAATTGGAATTTTTAAAAGTGAAAAATCGGTTTTCCAGATGAAAAATGACCTGAAAACTCAAAACAAAAAACTCAAAAATCGACAATTTGAAGTCAAAAAAAAAGAACTGAAATTCAATTTTCCGACTGCTAGAAATTGAATTTTTAACATAAAAATGAATTTTAACGAAATTCAAACCTTTTAAAAATTCAAAAAATTAAAATAAAATTCGAATAAAATCACTTATTTTACAGAGTGATTTTTCAAAATTGTGTGGATTTTTTCTGATTTTTTCTCTGTTTCTATTCGAATCTACATCGTTTTCTACACATTTCAATGCGAAGTTCAAATATTCACCTTCTTATGCTTTCTCGCCTTCCTCTCCTTCTTCGCTCTCTTCCGACGACGTTCCTCTGCTTCTGAATCCGTCGAGTCATCGGAATTATCGTTTGGACGACGTCGTTTGGCATCTGGAGACGAAGAACCGCTCCGACGACGATATTGAGCCGGAAGCACCG</canonical>
            <polymorphic>ATATTTCTGGGTCATTTTTCATCTAGAAAATCATTTTTGAAGGGATTTCCCACGATTTTTCGGCTTAATTTTTAGACCTTTTCAGGGTTTTTAGCTATTTTTGAGCATTCTTTTTCGAATTTTTCATAATTTTTTGTCTGAAATTTGACGGGATGGTGTTCGCGAAGATTACTGTAGAAACTCCTTTTGTAGTGTTTTAAACAGTGTTTATATACATTTTGACGTGGCAAAAAAGAACCACAAAAGGAAATTAGCTTCTACAGTAATCTACAGTAATCTTCACAAACACCGTCCAATCAAATTTCAGACAAAAATGGGAAAAATCGAAAAAGAATATTCAAAAATAGCTGAAAACCCGAAAAAGGTCTAAAAACTCTCGAAAAATCGCGAATTTTTCGGAATTTTCAGTTTTGGCGGGAATTCAAAAAATTTTTTAGAGATTTCGCAAGTTTTTCGGAAAAAGGTCTAAAAATTTTGGGAAAAATCGTTGAAAATCCTTWAAAAATTGGAATTTTTAAAAGTGAAAAATCGGTTTTCCAGATGAAAAATGACCTGAAAACTCAAAACAAAAAACTCAAAAATCGACAATTTGAAGTCAAAAAAAAAGAACTGAAATTCAATTTTCCGACTGCTAGAAATTGAATTTTTAACATAAAAATGAATTTTAACGAAATTCAAACCTTTTAAAAATTCAAAAAATTAAAATAAAATTCGAATAAAATCACTTATTTTACAGAGTGATTTTTCAAAATTGTGTGGATTTTTTCTGATTTTTTCTCTGTTTCTATTCGAATCTACATCGTTTTCTACACATTTCAATGCGAAGTTCAAATATTCACCTTCTTATGCTTTCTCGCCTTCCTCTCCTTCTTCGCTCTCTTCCGACGACGTTCCTCTGCTTCTGAATCCGTCGAGTCATCGGAATTATCGTTTGGACGACGTCGTTTGGCATCTGGAGACGAAGAACCGCTCCGACGACGATATTGAGCCGGAAGCACCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>301 300 132 132 65 19 18 17 16</canonical_bands>
                <polymorphic_bands>318 300 132 132 65 19 18 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTAGAGATTTCGCAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>AATTTCTAGCAGTCGGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>210</pcr_amplicon_size>
		<canonical_amplicon>TTTTTAGAGATTTCGCAAGTTTTTCGGAAAAAGGTCTAAAAATTTTGGGAAAAATCGTTGAAAATCCTTAAAAAATTGGAATTTTTAAAAGTGAAAAATCGGTTTTCCAGATGAAAAATGACCTGAAAACTCAAAACAAAAAACTCAAAAATCGACAATTTGAAGTCAAAAAAAAAGAACTGAAATTCAATTTTCCGACTGCTAGAAATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTAGAGATTTCGCAAGTTTTTCGGAAAAAGGTCTAAAAATTTTGGGAAAAATCGTTGAAAATCCTTWAAAAATTGGAATTTTTAAAAGTGAAAAATCGGTTTTCCAGATGAAAAATGACCTGAAAACTCAAAACAAAAAACTCAAAAATCGACAATTTGAAGTCAAAAAAAAAGAACTGAAATTCAATTTTCCGACTGCTAGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb546</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>353770</contig_pos>
        <strand>+</strand>
        <context>ATTTTGAAGG[A/G]AGAAACTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGTGAGCTGGCGCGTTTCTCGTTTCCGGCGGGAATTTCAATTTTGAAGG</left_flank>
        <right_flank>AGAAACTTGAAAAATTATTTATTTTCCGGGATTTTTTCAGCTCTTTTCCC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATATTGATGCGGGTCAGGTCGATCTTGAAGGAAAATATGAGAGAAGAGCCATCAAACCTTTAATATTCCAGATTAGAAATTTTTTCTATTTTTTCAAAAACTTTTTTCCAAAAAAAAAACTTTTTTCGGTTTTTCAGGTGAAAAATCGCTACTAGACCTCATTTTTATCTATATTTCCTACCTTTTTCTCTAGCTGCTGCTCGAATTTCATTGTTTTCAACAACTTTTTTTCTTTATCCGAAAATCGGCCATCCTGCTCTGAGCTGGCGCCGCGGAAGTAGCCAGCGTCCATTCTGAGATAGAAATTAGGTTAAATGTTCAATTTTCATAAGAAAAAACAAGGAGATTGGTAGAAAATCCGGCGAAAATCAATAGGGAAACATTGGGACAAATCTGATTGGCTCGACACGAAAAACGCGCCAGTTTTTTTCGTTTGCGCAGTTTTGGTGAGTGAGCTGGCGCGTTTCTCGTTTCCGGCGGGAATTTCAATTTTGAAGGAAGAAACTTGAAAAATTATTTATTTTCCGGGATTTTTTCAGCTCTTTTCCCCACTTTTAGCAAAAAAACACAAAATTCAGTCAGGAATACAAGTATTTTATTTGCTTTTCAATTAAAGGCATACATCAAGCACCAAAACCAGAAAAATGGTTTTTCAGGGGGGGGGGGAGAGAAAGGAAAAAAATCAATTATTGCCATAAAAAATACGTCGATACATAGGAACATGTAATTAAGAAGGTGAGAAAACAGGTGAAAAAACTTATTATGACATATGAGAGGGGGAGAAAATGCAAATTTTTGTATTATGAGGTTGTGAAGAAAATGCGCTCTATTGCTAAATTTTTTGAATTTTCAGCAAAAAACAAATGGATTCATAGAAACAAAATGCAATAAAATTGAGGAGAGAATGGGATGGGTGAATTTGCGTAATATAAAACAATCAAATAATAATAAAGTTAGTTAATCAGGTTGAGCGGGAAATTTGAAAAATTCAAATTTAAC</canonical>
            <polymorphic>CATATTGATGCGGGTCAGGTCGATCTTGAAGGAAAATATGAGAGAAGAGCCATCAAACCTTTAATATTCCAGATTAGAAATTTTTTCTATTTTTTCAAAAACTTTTTTCCAAAAAAAAAACTTTTTTCGGTTTTTCAGGTGAAAAATCGCTACTAGACCTCATTTTTATCTATATTTCCTACCTTTTTCTCTAGCTGCTGCTCGAATTTCATTGTTTTCAACAACTTTTTTTCTTTATCCGAAAATCGGCCATCCTGCTCTGAGCTGGCGCCGCGGAAGTAGCCAGCGTCCATTCTGAGATAGAAATTAGGTTAAATGTTCAATTTTCATAAGAAAAAACAAGGAGATTGGTAGAAAATCCGGCGAAAATCAATAGGGAAACATTGGGACAAATCTGATTGGCTCGACACGAAAAACGCGCCAGTTTTTTTCGTTTGCGCAGTTTTGGTGAGTGAGCTGGCGCGTTTCTCGTTTCCGGCGGGAATTTCAATTTTGAAGGRAGAAACTTGAAAAATTATTTATTTTCCGGGATTTTTTCAGCTCTTTTCCCCACTTTTAGCAAAAAAACACAAAATTCAGTCAGGAATACAAGTATTTTATTTGCTTTTCAATTAAAGGCATACATCAAGCACCAAAACCAGAAAAATGGTTTTTCAGGGGGGGGGGGAGAGAAAGGAAAAAAATCAATTATTGCCATAAAAAATACGTCGATACATAGGAACATGTAATTAAGAAGGTGAGAAAACAGGTGAAAAAACTTATTATGACATATGAGAGGGGGAGAAAATGCAAATTTTTGTATTATGAGGTTGTGAAGAAAATGCGCTCTATTGCTAAATTTTTTGAATTTTCAGCAAAAAACAAATGGATTCATAGAAACAAAATGCAATAAAATTGAGGAGAGAATGGGATGGGTGAATTTGCGTAATATAAAACAATCAAATAATAATAAAGTTAGTTAATCAGGTTGAGCGGGAAATTTGAAAAATTCAAATTTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAAGGAGATTGGTAGAAAATC</pcr_primer_p1>
		<pcr_primer_p2>TATTCCTGACTGAATTTTGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AACAAGGAGATTGGTAGAAAATCCGGCGAAAATCAATAGGGAAACATTGGGACAAATCTGATTGGCTCGACACGAAAAACGCGCCAGTTTTTTTCGTTTGCGCAGTTTTGGTGAGTGAGCTGGCGCGTTTCTCGTTTCCGGCGGGAATTTCAATTTTGAAGGAAGAAACTTGAAAAATTATTTATTTTCCGGGATTTTTTCAGCTCTTTTCCCCACTTTTAGCAAAAAAACACAAAATTCAGTCAGGAATA</canonical_amplicon>
		<polymorphic_amplicon>AACAAGGAGATTGGTAGAAAATCCGGCGAAAATCAATAGGGAAACATTGGGACAAATCTGATTGGCTCGACACGAAAAACGCGCCAGTTTTTTTCGTTTGCGCAGTTTTGGTGAGTGAGCTGGCGCGTTTCTCGTTTCCGGCGGGAATTTCAATTTTGAAGGRAGAAACTTGAAAAATTATTTATTTTCCGGGATTTTTTCAGCTCTTTTCCCCACTTTTAGCAAAAAAACACAAAATTCAGTCAGGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb547</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>353758</contig_pos>
        <strand>+</strand>
        <context>GCGGGAATTT[C/G]AATTTTGAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGCAGTTTTGGTGAGTGAGCTGGCGCGTTTCTCGTTTCCGGCGGGAATTT</left_flank>
        <right_flank>AATTTTGAAGGAAGAAACTTGAAAAATTATTTATTTTCCGGGATTTTTTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGATGACGTCCATATTGATGCGGGTCAGGTCGATCTTGAAGGAAAATATGAGAGAAGAGCCATCAAACCTTTAATATTCCAGATTAGAAATTTTTTCTATTTTTTCAAAAACTTTTTTCCAAAAAAAAAACTTTTTTCGGTTTTTCAGGTGAAAAATCGCTACTAGACCTCATTTTTATCTATATTTCCTACCTTTTTCTCTAGCTGCTGCTCGAATTTCATTGTTTTCAACAACTTTTTTTCTTTATCCGAAAATCGGCCATCCTGCTCTGAGCTGGCGCCGCGGAAGTAGCCAGCGTCCATTCTGAGATAGAAATTAGGTTAAATGTTCAATTTTCATAAGAAAAAACAAGGAGATTGGTAGAAAATCCGGCGAAAATCAATAGGGAAACATTGGGACAAATCTGATTGGCTCGACACGAAAAACGCGCCAGTTTTTTTCGTTTGCGCAGTTTTGGTGAGTGAGCTGGCGCGTTTCTCGTTTCCGGCGGGAATTTCAATTTTGAAGGAAGAAACTTGAAAAATTATTTATTTTCCGGGATTTTTTCAGCTCTTTTCCCCACTTTTAGCAAAAAAACACAAAATTCAGTCAGGAATACAAGTATTTTATTTGCTTTTCAATTAAAGGCATACATCAAGCACCAAAACCAGAAAAATGGTTTTTCAGGGGGGGGGGGAGAGAAAGGAAAAAAATCAATTATTGCCATAAAAAATACGTCGATACATAGGAACATGTAATTAAGAAGGTGAGAAAACAGGTGAAAAAACTTATTATGACATATGAGAGGGGGAGAAAATGCAAATTTTTGTATTATGAGGTTGTGAAGAAAATGCGCTCTATTGCTAAATTTTTTGAATTTTCAGCAAAAAACAAATGGATTCATAGAAACAAAATGCAATAAAATTGAGGAGAGAATGGGATGGGTGAATTTGCGTAATATAAAACAATCAAATAATAATAAAGTTAGTTAATCAGGTTGAGCGGGAAATTTGAAAAA</canonical>
            <polymorphic>CTTGATGACGTCCATATTGATGCGGGTCAGGTCGATCTTGAAGGAAAATATGAGAGAAGAGCCATCAAACCTTTAATATTCCAGATTAGAAATTTTTTCTATTTTTTCAAAAACTTTTTTCCAAAAAAAAAACTTTTTTCGGTTTTTCAGGTGAAAAATCGCTACTAGACCTCATTTTTATCTATATTTCCTACCTTTTTCTCTAGCTGCTGCTCGAATTTCATTGTTTTCAACAACTTTTTTTCTTTATCCGAAAATCGGCCATCCTGCTCTGAGCTGGCGCCGCGGAAGTAGCCAGCGTCCATTCTGAGATAGAAATTAGGTTAAATGTTCAATTTTCATAAGAAAAAACAAGGAGATTGGTAGAAAATCCGGCGAAAATCAATAGGGAAACATTGGGACAAATCTGATTGGCTCGACACGAAAAACGCGCCAGTTTTTTTCGTTTGCGCAGTTTTGGTGAGTGAGCTGGCGCGTTTCTCGTTTCCGGCGGGAATTTSAATTTTGAAGGAAGAAACTTGAAAAATTATTTATTTTCCGGGATTTTTTCAGCTCTTTTCCCCACTTTTAGCAAAAAAACACAAAATTCAGTCAGGAATACAAGTATTTTATTTGCTTTTCAATTAAAGGCATACATCAAGCACCAAAACCAGAAAAATGGTTTTTCAGGGGGGGGGGGAGAGAAAGGAAAAAAATCAATTATTGCCATAAAAAATACGTCGATACATAGGAACATGTAATTAAGAAGGTGAGAAAACAGGTGAAAAAACTTATTATGACATATGAGAGGGGGAGAAAATGCAAATTTTTGTATTATGAGGTTGTGAAGAAAATGCGCTCTATTGCTAAATTTTTTGAATTTTCAGCAAAAAACAAATGGATTCATAGAAACAAAATGCAATAAAATTGAGGAGAGAATGGGATGGGTGAATTTGCGTAATATAAAACAATCAAATAATAATAAAGTTAGTTAATCAGGTTGAGCGGGAAATTTGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAAGGAGATTGGTAGAAAATC</pcr_primer_p1>
		<pcr_primer_p2>TATTCCTGACTGAATTTTGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AACAAGGAGATTGGTAGAAAATCCGGCGAAAATCAATAGGGAAACATTGGGACAAATCTGATTGGCTCGACACGAAAAACGCGCCAGTTTTTTTCGTTTGCGCAGTTTTGGTGAGTGAGCTGGCGCGTTTCTCGTTTCCGGCGGGAATTTCAATTTTGAAGGAAGAAACTTGAAAAATTATTTATTTTCCGGGATTTTTTCAGCTCTTTTCCCCACTTTTAGCAAAAAAACACAAAATTCAGTCAGGAATA</canonical_amplicon>
		<polymorphic_amplicon>AACAAGGAGATTGGTAGAAAATCCGGCGAAAATCAATAGGGAAACATTGGGACAAATCTGATTGGCTCGACACGAAAAACGCGCCAGTTTTTTTCGTTTGCGCAGTTTTGGTGAGTGAGCTGGCGCGTTTCTCGTTTCCGGCGGGAATTTSAATTTTGAAGGAAGAAACTTGAAAAATTATTTATTTTCCGGGATTTTTTCAGCTCTTTTCCCCACTTTTAGCAAAAAAACACAAAATTCAGTCAGGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb548</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>424969</contig_pos>
        <strand></strand>
        <context>TCTGGAAGGT[C/T]CAACCTTCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTAGGGCTACAAACTACAAGAATTCTCCTTGAAGAATATTCTGGAAGGT</left_flank>
        <right_flank>CAACCTTCTGCATTTTCAAGCAAGCTAGATCCTAACAAGTGAAAAAATCT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTTGTCAACTACAAAAATGAAGCCCTAGTTTTGTTTAATATACTCTGACATTTTCAGCCAAATTTGACTAGTTTGAAATACTTTTGTAGACGCTTGAATCATTTTTGAAACACTATAGCTTTCTGTGTAGCTAGCAAACTGATTCCAAAGAAGTTTGTACGGTGAAATATGGAATGTTTTGGAAAATAAAATTACAGACTGCGCCCGATACTCAGAGATTGCGAAAATCATGGAAGGAACCTATAAATCGGACCCACCAACAATAGTAAAAGTGGAAGCAACAGATGATGATTCATCAGCGAATGGAGATATCGTATATTCATTGTATTACACACAATCGGAGAGTCGAAAAGCATTTGTGATAGATAGACATACGGGAGTGTTAACACCATCCCCGCATGTTGTATTCGATCGGGAGACACGACCACGAGAGGATGTTACCGTTAAGGTAGGGCTACAAACTACAAGAATTCTCCTTGAAGAATATTCTGGAAGGTCCAACCTTCTGCATTTTCAAGCAAGCTAGATCCTAACAAGTGAAAAAATCTTAGATTTTGAAATTCTGGAGATTTTGGGATGCTAGAGACCATATCTGCTATAATAAAAACCCACCCAACTTTGAGCTTATATATCTCGGTTACTGTAAGAGATATCAAAAATTAGTAAACTAATAAAATGTTGCTGATATCATGATAAACAATTTATTAGTTGACAATTTTTTGATACCTCTTACAGGAATTAAGATAAATTAGATTGAAGGGAGAGGTGCCCCCCCCCCCCCCTCTTTGCCCCTTACCCCTCGGGAGGTCCGACTACTTTGAGCTCAATTATCTCGGCTCCTATAAAAAATATCAAAAATTAGTAAACTATTAAAATGTTTGTGTTAATTTGATAAAGATTATATCAGTTGACAACTTTTTGATAGCTCTTACAGAAATTGAGATAAATAAACTTAAAGGGACAGCCCCCCCCCCCCTCTCGGGAGGTCCCATTACTTT</canonical>
            <polymorphic>AAGTTGTCAACTACAAAAATGAAGCCCTAGTTTTGTTTAATATACTCTGACATTTTCAGCCAAATTTGACTAGTTTGAAATACTTTTGTAGACGCTTGAATCATTTTTGAAACACTATAGCTTTCTGTGTAGCTAGCAAACTGATTCCAAAGAAGTTTGTACGGTGAAATATGGAATGTTTTGGAAAATAAAATTACAGACTGCGCCCGATACTCAGAGATTGCGAAAATCATGGAAGGAACCTATAAATCGGACCCACCAACAATAGTAAAAGTGGAAGCAACAGATGATGATTCATCAGCGAATGGAGATATCGTATATTCATTGTATTACACACAATCGGAGAGTCGAAAAGCATTTGTGATAGATAGACATACGGGAGTGTTAACACCATCCCCGCATGTTGTATTCGATCGGGAGACACGACCACGAGAGGATGTTACCGTTAAGGTAGGGCTACAAACTACAAGAATTCTCCTTGAAGAATATTCTGGAAGGTYCAACCTTCTGCATTTTCAAGCAAGCTAGATCCTAACAAGTGAAAAAATCTTAGATTTTGAAATTCTGGAGATTTTGGGATGCTAGAGACCATATCTGCTATAATAAAAACCCACCCAACTTTGAGCTTATATATCTCGGTTACTGTAAGAGATATCAAAAATTAGTAAACTAATAAAATGTTGCTGATATCATGATAAACAATTTATTAGTTGACAATTTTTTGATACCTCTTACAGGAATTAAGATAAATTAGATTGAAGGGAGAGGTGCCCCCCCCCCCCCCTCTTTGCCCCTTACCCCTCGGGAGGTCCGACTACTTTGAGCTCAATTATCTCGGCTCCTATAAAAAATATCAAAAATTAGTAAACTATTAAAATGTTTGTGTTAATTTGATAAAGATTATATCAGTTGACAACTTTTTGATAGCTCTTACAGAAATTGAGATAAATAAACTTAAAGGGACAGCCCCCCCCCCCCTCTCGGGAGGTCCCATTACTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>311 252 245 179 13</canonical_bands>
                <polymorphic_bands>556 252 179 13</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>311 252 245 179 13</canonical_bands>
                <polymorphic_bands>556 252 179 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAGGTAGGGCTACAAACTACAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGACAAAATCCAATCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>751</pcr_amplicon_size>
		<canonical_amplicon>TAAGGTAGGGCTACAAACTACAAGAATTCTCCTTGAAGAATATTCTGGAAGGTCCAACCTTCTGCATTTTCAAG</canonical_amplicon>
		<polymorphic_amplicon>TAAGGTAGGGCTACAAACTACAAGAATTCTCCTTGAAGAATATTCTGGAAGGTYCAACCTTCTGCATTTTCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb549</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>425047</contig_pos>
        <strand></strand>
        <context>GAGATTTTGG[G/A]ATGCTAGAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GATCCTAACAAGTGAAAAAATCTTAGATTTTGAAATTCTGGAGATTTTGG</left_flank>
        <right_flank>ATGCTAGAGACCATATCTGCTATAATAAAAACCCACCCAACTTTGAGCTT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATACTTTTGTAGACGCTTGAATCATTTTTGAAACACTATAGCTTTCTGTGTAGCTAGCAAACTGATTCCAAAGAAGTTTGTACGGTGAAATATGGAATGTTTTGGAAAATAAAATTACAGACTGCGCCCGATACTCAGAGATTGCGAAAATCATGGAAGGAACCTATAAATCGGACCCACCAACAATAGTAAAAGTGGAAGCAACAGATGATGATTCATCAGCGAATGGAGATATCGTATATTCATTGTATTACACACAATCGGAGAGTCGAAAAGCATTTGTGATAGATAGACATACGGGAGTGTTAACACCATCCCCGCATGTTGTATTCGATCGGGAGACACGACCACGAGAGGATGTTACCGTTAAGGTAGGGCTACAAACTACAAGAATTCTCCTTGAAGAATATTCTGGAAGGTCCAACCTTCTGCATTTTCAAGCAAGCTAGATCCTAACAAGTGAAAAAATCTTAGATTTTGAAATTCTGGAGATTTTGGGATGCTAGAGACCATATCTGCTATAATAAAAACCCACCCAACTTTGAGCTTATATATCTCGGTTACTGTAAGAGATATCAAAAATTAGTAAACTAATAAAATGTTGCTGATATCATGATAAACAATTTATTAGTTGACAATTTTTTGATACCTCTTACAGGAATTAAGATAAATTAGATTGAAGGGAGAGGTGCCCCCCCCCCCCCCTCTTTGCCCCTTACCCCTCGGGAGGTCCGACTACTTTGAGCTCAATTATCTCGGCTCCTATAAAAAATATCAAAAATTAGTAAACTATTAAAATGTTTGTGTTAATTTGATAAAGATTATATCAGTTGACAACTTTTTGATAGCTCTTACAGAAATTGAGATAAATAAACTTAAAGGGACAGCCCCCCCCCCCCTCTCGGGAGGTCCCATTACTTTGAGCTCAATTATCTCGGCTCCTCTAAAAGATATCAAAAATGTGCCAATGGATGAAATGTTTATCATAATATCACCAAT</canonical>
            <polymorphic>AATACTTTTGTAGACGCTTGAATCATTTTTGAAACACTATAGCTTTCTGTGTAGCTAGCAAACTGATTCCAAAGAAGTTTGTACGGTGAAATATGGAATGTTTTGGAAAATAAAATTACAGACTGCGCCCGATACTCAGAGATTGCGAAAATCATGGAAGGAACCTATAAATCGGACCCACCAACAATAGTAAAAGTGGAAGCAACAGATGATGATTCATCAGCGAATGGAGATATCGTATATTCATTGTATTACACACAATCGGAGAGTCGAAAAGCATTTGTGATAGATAGACATACGGGAGTGTTAACACCATCCCCGCATGTTGTATTCGATCGGGAGACACGACCACGAGAGGATGTTACCGTTAAGGTAGGGCTACAAACTACAAGAATTCTCCTTGAAGAATATTCTGGAAGGTCCAACCTTCTGCATTTTCAAGCAAGCTAGATCCTAACAAGTGAAAAAATCTTAGATTTTGAAATTCTGGAGATTTTGGRATGCTAGAGACCATATCTGCTATAATAAAAACCCACCCAACTTTGAGCTTATATATCTCGGTTACTGTAAGAGATATCAAAAATTAGTAAACTAATAAAATGTTGCTGATATCATGATAAACAATTTATTAGTTGACAATTTTTTGATACCTCTTACAGGAATTAAGATAAATTAGATTGAAGGGAGAGGTGCCCCCCCCCCCCCCTCTTTGCCCCTTACCCCTCGGGAGGTCCGACTACTTTGAGCTCAATTATCTCGGCTCCTATAAAAAATATCAAAAATTAGTAAACTATTAAAATGTTTGTGTTAATTTGATAAAGATTATATCAGTTGACAACTTTTTGATAGCTCTTACAGAAATTGAGATAAATAAACTTAAAGGGACAGCCCCCCCCCCCCTCTCGGGAGGTCCCATTACTTTGAGCTCAATTATCTCGGCTCCTCTAAAAGATATCAAAAATGTGCCAATGGATGAAATGTTTATCATAATATCACCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAGATCCTAACAAGTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGACAAAATCCAATCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>674</pcr_amplicon_size>
		<canonical_amplicon>GCTAGATCCTAACAAGTGAAAAAATCTTAGATTTTGAAATTCTGGAGATTTTGGGATGCTAGAGACCATATCTGC</canonical_amplicon>
		<polymorphic_amplicon>GCTAGATCCTAACAAGTGAAAAAATCTTAGATTTTGAAATTCTGGAGATTTTGGRATGCTAGAGACCATATCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb551</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>429486</contig_pos>
        <strand></strand>
        <context>TTTGTCGGTC[T/C]AGCAAATGCG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCACCTAACAGATGGTGTATCTGGGCGCGCTCATTTTAAGTTTGTCGGTC</left_flank>
        <right_flank>AGCAAATGCGCTCTATTGAACACACCAAACAATTATTTCAACAAAAAAAT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGTTTTTTAAAATTTTTAATTGGAAATAGCTCAAAATTGCTCAGTTACCCAATGTAAATCTGTTGGTTTTGAAGAAATTTATTAATTTTGAACAACAATTTTTGATTGGCTACAATAGTAGGTCAAAATTTGTCTGAAAATTTCAGAATATACTAAAAAAGACATGTGCTTCAATTTTGTAGTTGACAACTTTTTTGAAAAATTAGGTCCTGAGGAGATATGCTACTTGGAAGCGTCCTTCTCACTTCTATGACGCCACCCCTTTGACAAGTGGGCGGCGCCCACTGGATGGCCGCGCTACCGGAAGGAGGACAACTTCTACGTGGCATATCTCCTTGGGACCTAAGTTTTCGAAAAAGTGGTCAACTAAAATAATGAAGCTCTACATTTGTTTAGTGTACTCTGCAATTTTCAGACAAATTGAAACATTTTGAATGTCTTTTGTAGGCACCTAACAGATGGTGTATCTGGGCGCGCTCATTTTAAGTTTGTCGGTCTAGCAAATGCGCTCTATTGAACACACCAAACAATTATTTCAACAAAAAAATTCAGATTCCAACCTCCGCTACCATCTAATCGGCTCGGGAGGCGGTCGAATCCCATTCGGTGTTCGTACGGATTCTGGAACAATCTTTGTCAAGGAACCATTGGATTTTGAATCCGCAGATCAATATCATTTAATCCTGATTGCCTCTGACGGGAGACACAACGCAACAACAAATGTCTATATACATATAGAAGACGTCAATGATAATGCACCACAATTCGAACAACAAAAATATGCAACTACAGTAATCGAGGAGGATGTGGATGTCCCCAAAGTGTTGTTCAATGTCCGGGCGACAGATGCGGATCAGGATGAGAAGAGCAGTCGAATTGTGTATCGATTGGAGGGTCAGGGAGCGGAGGAAGTGTTCAGAATTGGGAAGTATTCTGGAATGATTGAGCTGGTGAAGCCGTTGGATAGAGATCCGCCCACCGGCGTGCCTAGTTGGAAT</canonical>
            <polymorphic>TGTGTTTTTTAAAATTTTTAATTGGAAATAGCTCAAAATTGCTCAGTTACCCAATGTAAATCTGTTGGTTTTGAAGAAATTTATTAATTTTGAACAACAATTTTTGATTGGCTACAATAGTAGGTCAAAATTTGTCTGAAAATTTCAGAATATACTAAAAAAGACATGTGCTTCAATTTTGTAGTTGACAACTTTTTTGAAAAATTAGGTCCTGAGGAGATATGCTACTTGGAAGCGTCCTTCTCACTTCTATGACGCCACCCCTTTGACAAGTGGGCGGCGCCCACTGGATGGCCGCGCTACCGGAAGGAGGACAACTTCTACGTGGCATATCTCCTTGGGACCTAAGTTTTCGAAAAAGTGGTCAACTAAAATAATGAAGCTCTACATTTGTTTAGTGTACTCTGCAATTTTCAGACAAATTGAAACATTTTGAATGTCTTTTGTAGGCACCTAACAGATGGTGTATCTGGGCGCGCTCATTTTAAGTTTGTCGGTCYAGCAAATGCGCTCTATTGAACACACCAAACAATTATTTCAACAAAAAAATTCAGATTCCAACCTCCGCTACCATCTAATCGGCTCGGGAGGCGGTCGAATCCCATTCGGTGTTCGTACGGATTCTGGAACAATCTTTGTCAAGGAACCATTGGATTTTGAATCCGCAGATCAATATCATTTAATCCTGATTGCCTCTGACGGGAGACACAACGCAACAACAAATGTCTATATACATATAGAAGACGTCAATGATAATGCACCACAATTCGAACAACAAAAATATGCAACTACAGTAATCGAGGAGGATGTGGATGTCCCCAAAGTGTTGTTCAATGTCCGGGCGACAGATGCGGATCAGGATGAGAAGAGCAGTCGAATTGTGTATCGATTGGAGGGTCAGGGAGCGGAGGAAGTGTTCAGAATTGGGAAGTATTCTGGAATGATTGAGCTGGTGAAGCCGTTGGATAGAGATCCGCCCACCGGCGTGCCTAGTTGGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 491 10</canonical_bands>
                <polymorphic_bands>990 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTAAATCTGTTGGTTTTGAAG</pcr_primer_p1>
		<pcr_primer_p2>GAGGTTGGAATCTGAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>512</pcr_amplicon_size>
		<canonical_amplicon>ATGTAAATCTGTTGGTTTTGAAGAAATTTATTAATTTTGAACAACAATTTTTGATTGGCTACAATAGTAGGTCAAAATTTGTCTGAAAATTTCAGAATATACTAAAAAAGACATGTGCTTCAATTTTGTAGTTGACAACTTTTTTGAAAAATTAGGTCCTGAGGAGATATGCTACTTGGAAGCGTCCTTCTCACTTCTATGACGCCACCCCTTTGACAAGTGGGCGGCGCCCACTGGATGGCCGCGCTACCGGAAGGAGGACAACTTCTACGTGGCATATCTCCTTGGGACCTAAGTTTTCGAAAAAGTGGTCAACTAAAATAATGAAGCTCTACATTTGTTTAGTGTACTCTGCAATTTTCAGACAAATTGAAACATTTTGAATGTCTTTTGTAGGCACCTAACAGATGGTGTATCTGGGCGCGCTCATTTTAAGTTTGTCGGTCTAGCAAATGCGCTCTATTGAACACACCAAACAATTATTTCAACAAAAAAATTCAGATTCCAACCTC</canonical_amplicon>
		<polymorphic_amplicon>ATGTAAATCTGTTGGTTTTGAAGAAATTTATTAATTTTGAACAACAATTTTTGATTGGCTACAATAGTAGGTCAAAATTTGTCTGAAAATTTCAGAATATACTAAAAAAGACATGTGCTTCAATTTTGTAGTTGACAACTTTTTTGAAAAATTAGGTCCTGAGGAGATATGCTACTTGGAAGCGTCCTTCTCACTTCTATGACGCCACCCCTTTGACAAGTGGGCGGCGCCCACTGGATGGCCGCGCTACCGGAAGGAGGACAACTTCTACGTGGCATATCTCCTTGGGACCTAAGTTTTCGAAAAAGTGGTCAACTAAAATAATGAAGCTCTACATTTGTTTAGTGTACTCTGCAATTTTCAGACAAATTGAAACATTTTGAATGTCTTTTGTAGGCACCTAACAGATGGTGTATCTGGGCGCGCTCATTTTAAGTTTGTCGGTCYAGCAAATGCGCTCTATTGAACACACCAAACAATTATTTCAACAAAAAAATTCAGATTCCAACCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb553</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>450331</contig_pos>
        <strand>+</strand>
        <context>TTTTCTGCAC[A/C]ATTTTTTTTS</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTAAAAACCTTTAAAATTTGTCAAAAAAATTTGACCTACTTTTTCTGCAC</left_flank>
        <right_flank>ATTTTTTTTTGTCCTTCAGCTCAATGAATCTATTTTTTGACCTCCTGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACCTGTGCATTTTCTCTGCGTCTCTCCTCCCTCTCTCCCCCATATACAGTCCGCCACACTATCGGTCATCTCGGGTCCCCCCATCCGCGCACACTCCTATTTCTTACCTTTGTTAGTGGGCGTGGCTTATAGCCTGCTGGACACTCTCTCGTTTGTCTGCGTCTCTTCAAATTCCACACTCTTTCGCTCTTGACCGAGCGCGCGCGCATCCCTCCCTACTCTGTTAGTTCTGTATCTCTTCTTCTTCTATTTCTCTTTTTCTTCTTTTTGGTGGAGGAGAAGAAGAAGAAGAAGACATACACGTTTATACTCTATCTCCCTCCTTAGAGTCTCTCTCTCTCTCTCTCTGCTACTTTTCATTCATCCCAACAAATCTCTTCTCTTTTTTTTTATATAAAACTCTTTTGCTACTTTTTAGCCATTTTTAAAAATACATTCTTGATCTACCTAAAAACCTTTAAAATTTGTCAAAAAAATTTGACCTACTTTTTCTGCACCATTTTTTTTTGTCCTTCAGCTCAATGAATCTATTTTTTGACCTCCTGAATTTCGTAGAATAAGAAATTTGACCTACTTTTTAGACGATTTTCTCATACATTTAGAATCTCATATATTCAAAACTAATGAAAATTTCATGAATTTTGAGCTAGAAATCGTTAAAAACGGTTCCAAACTAGCCGAGTTGGAGCGTTTTGAAATTTTTACTGAGGCTTATAAGTTTTTGTAGTTTGTAGCTTTTTAGCCTCAGTAAAAACTTCAAACTGCGATAACTCGGTTATTTTTGAACCGTTTTCGATCGTCTTTGAATGAAAATTCACATGTTCCGCTTTTTTAATTGAAACTACAAACTACAAGAGTTAGCCTCAGTAAAACTTATTTTTCCGCCGTTTTGAACGCATTTTGACTCAAAATTCGTGATTTTTTTTTCGTTTTTTGAGCTCAAAATTGTGTAGTTTGCAGGCCTATTTAATTTTTTTAGCTCTAAAAAATTTTCCTGC</canonical>
            <polymorphic>CTACCTGTGCATTTTCTCTGCGTCTCTCCTCCCTCTCTCCCCCATATACAGTCCGCCACACTATCGGTCATCTCGGGTCCCCCCATCCGCGCACACTCCTATTTCTTACCTTTGTTAGTGGGCGTGGCTTATAGCCTGCTGGACACTCTCTCGTTTGTCTGCGTCTCTTCAAATTCCACACTCTTTCGCTCTTGACCGAGCGCGCGCGCATCCCTCCCTACTCTGTTAGTTCTGTATCTCTTCTTCTTCTATTTCTCTTTTTCTTCTTTTTGGTGGAGGAGAAGAAGAAGAAGAAGACATACACGTTTATACTCTATCTCCCTCCTTAGAGTCTCTCTCTCTCTCTCTCTGCTACTTTTCATTCATCCCAACAAATCTCTTCTCTTTTTTTTTATATAAAACTCTTTTGCTACTTTTTAGCCATTTTTAAAAATACATTCTTGATCTACCTAAAAACCTTTAAAATTTGTCAAAAAAATTTGACCTACTTTTTCTGCACMATTTTTTTTTGTCCTTCAGCTCAATGAATCTATTTTTTGACCTCCTGAATTTCGTAGAATAAGAAATTTGACCTACTTTTTAGACGATTTTCTCATACATTTAGAATCTCATATATTCAAAACTAATGAAAATTTCATGAATTTTGAGCTAGAAATCGTTAAAAACGGTTCCAAACTAGCCGAGTTGGAGCGTTTTGAAATTTTTACTGAGGCTTATAAGTTTTTGTAGTTTGTAGCTTTTTAGCCTCAGTAAAAACTTCAAACTGCGATAACTCGGTTATTTTTGAACCGTTTTCGATCGTCTTTGAATGAAAATTCACATGTTCCGCTTTTTTAATTGAAACTACAAACTACAAGAGTTAGCCTCAGTAAAACTTATTTTTCCGCCGTTTTGAACGCATTTTGACTCAAAATTCGTGATTTTTTTTTCGTTTTTTGAGCTCAAAATTGTGTAGTTTGCAGGCCTATTTAATTTTTTTAGCTCTAAAAAATTTTCCTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTCTCTGCTACTTTTCATTCA</pcr_primer_p1>
		<pcr_primer_p2>AAAATCGTCTAAAAAGTAGGTCAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCTCTCTGCTACTTTTCATTCATCCCAACAAATCTCTTCTCTTTTTTTTTATATAAAACTCTTTTGCTACTTTTTAGCCATTTTTAAAAATACATTCTTGATCTACCTAAAAACCTTTAAAATTTGTCAAAAAAATTTGACCTACTTTTTCTGCACCATTTTTTTTTGTCCTTCAGCTCAATGAATCTATTTTTTGACCTCCTGAATTTCGTAGAATAAGAAATTTGACCTACTTTTTAGACGATTTT</canonical_amplicon>
		<polymorphic_amplicon>CTCTCTCTGCTACTTTTCATTCATCCCAACAAATCTCTTCTCTTTTTTTTTATATAAAACTCTTTTGCTACTTTTTAGCCATTTTTAAAAATACATTCTTGATCTACCTAAAAACCTTTAAAATTTGTCAAAAAAATTTGACCTACTTTTTCTGCACMATTTTTTTTTGTCCTTCAGCTCAATGAATCTATTTTTTGACCTCCTGAATTTCGTAGAATAAGAAATTTGACCTACTTTTTAGACGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb554</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>451946</contig_pos>
        <strand>+</strand>
        <context>GTGGGATTAT[A/G]AATTTTMCCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTACAACTTCTCGTAAGTCTTTTTTTTTGGGTGAGACGGGTGGGATTAT</left_flank>
        <right_flank>AATTTTACCGAAAATAGAATAAATTTCCAACATATCTATCCAAAAACGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTCGCTGCGGATTCGCGTCTCCGACGGACGACACGATGCTGAAGCGGCGTGCCACGTGGCACTCGTCGATCGCAACGACCACGCGCCACACATTCACGGAGCCACAGAGCACAGAATCAGAGAAGACGTGCCGAGAGGAACAGTCATCGGACAGTACACGACGAGCGACAAGGATGCCGGTGACGTGGCAAGGTAAAGGGGGGCTCTGGGTGACACTATTGGGGTTGGTGGCGCTGATGGGTTGTTTCATTGGTCATGCGGAGGCGTTTACGGACCTTTCGCTGCCATTCGGACTTGAACCATCGGTTGCCAAGTCGCGGTTCTCATCGCTTGTCGGTGGAGTCCGTGCCAGGGATATACATGTGTTTGTGATGAAAAATATCAGTGAGGATACGCCGGTCGGAACGGTTCTTGAGACTTTTAAGGCTCACGATCCGAGTAATCCAATGTACAACTTCTCGTAAGTCTTTTTTTTTGGGTGAGACGGGTGGGATTATAAATTTTACCGAAAATAGAATAAATTTCCAACATATCTATCCAAAAACGAGTTTTCTAGCTGGAAAACTAGCCGAGATACAGCGGTTTTACGTTTTACTGAGGCTTAGAGTTTTTGTAGTTTGTAGTCGCTAAGCCTCAGTAAAAATGTTCAAGCTTCACGTGAAAATTCGTTAAACTTTTAATTTTCACGTACGTTTTGAAGATTTTCCTGAGGCTTAGCAATTTATGTAGTTTGTAGTCGCTGAAATTTCCAGCATTTCTATCCAAAAACGACTTTTCTAGCTGAAAAACTAGCCGAGTTATAGTGCTTTTAAGTTTTACTGAGGCTTAGAGAATTTTCGTAGTTTGTAGTCTAAGCCTCAGTAAAAATTTTACGTGAAAAAAAATTCTTTCAAATTTTAATTTCCACGTATTTTTTTCTCAAATTTTTCACGTGTTAAAAAAATCTTGAGGCTTAGCGTTTTGTAGTTTGTAGTCGGTAAGCCTCAGTAAAAAATACA</canonical>
            <polymorphic>TTCTCGCTGCGGATTCGCGTCTCCGACGGACGACACGATGCTGAAGCGGCGTGCCACGTGGCACTCGTCGATCGCAACGACCACGCGCCACACATTCACGGAGCCACAGAGCACAGAATCAGAGAAGACGTGCCGAGAGGAACAGTCATCGGACAGTACACGACGAGCGACAAGGATGCCGGTGACGTGGCAAGGTAAAGGGGGGCTCTGGGTGACACTATTGGGGTTGGTGGCGCTGATGGGTTGTTTCATTGGTCATGCGGAGGCGTTTACGGACCTTTCGCTGCCATTCGGACTTGAACCATCGGTTGCCAAGTCGCGGTTCTCATCGCTTGTCGGTGGAGTCCGTGCCAGGGATATACATGTGTTTGTGATGAAAAATATCAGTGAGGATACGCCGGTCGGAACGGTTCTTGAGACTTTTAAGGCTCACGATCCGAGTAATCCAATGTACAACTTCTCGTAAGTCTTTTTTTTTGGGTGAGACGGGTGGGATTATRAATTTTACCGAAAATAGAATAAATTTCCAACATATCTATCCAAAAACGAGTTTTCTAGCTGGAAAACTAGCCGAGATACAGCGGTTTTACGTTTTACTGAGGCTTAGAGTTTTTGTAGTTTGTAGTCGCTAAGCCTCAGTAAAAATGTTCAAGCTTCACGTGAAAATTCGTTAAACTTTTAATTTTCACGTACGTTTTGAAGATTTTCCTGAGGCTTAGCAATTTATGTAGTTTGTAGTCGCTGAAATTTCCAGCATTTCTATCCAAAAACGACTTTTCTAGCTGAAAAACTAGCCGAGTTATAGTGCTTTTAAGTTTTACTGAGGCTTAGAGAATTTTCGTAGTTTGTAGTCTAAGCCTCAGTAAAAATTTTACGTGAAAAAAAATTCTTTCAAATTTTAATTTCCACGTATTTTTTTCTCAAATTTTTCACGTGTTAAAAAAATCTTGAGGCTTAGCGTTTTGTAGTTTGTAGTCGGTAAGCCTCAGTAAAAAATACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>500 143 88 81 77 34 29 21 17 10</canonical_bands>
                <polymorphic_bands>521 143 88 81 77 34 29 17 10</polymorphic_bands>
            </assay>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATGTACAACTTCTCGTAAGTCT</pcr_primer_p1>
		<pcr_primer_p2>CAAAAATCAATGAGGGAATG</pcr_primer_p2>
		<pcr_amplicon_size>728</pcr_amplicon_size>
		<canonical_amplicon>CAATGTACAACTTCTCGTAAGTCTTTTTTTTTGGGTGAGACGGGTGGGATTATAAATTTTACCGAAAATAGAA</canonical_amplicon>
		<polymorphic_amplicon>CAATGTACAACTTCTCGTAAGTCTTTTTTTTTGGGTGAGACGGGTGGGATTATRAATTTTACCGAAAATAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb555</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>451930</contig_pos>
        <strand>+</strand>
        <context>KTTTTGGGTG[A/G]GACGGGTGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATCCGAGTAATCCAATGTACAACTTCTCGTAAGTCTTTTTTTTTGGGTG</left_flank>
        <right_flank>GACGGGTGGGATTATAAATTTTACCGAAAATAGAATAAATTTCCAACATA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCACAACGTGACGGCTTCTCGCTGCGGATTCGCGTCTCCGACGGACGACACGATGCTGAAGCGGCGTGCCACGTGGCACTCGTCGATCGCAACGACCACGCGCCACACATTCACGGAGCCACAGAGCACAGAATCAGAGAAGACGTGCCGAGAGGAACAGTCATCGGACAGTACACGACGAGCGACAAGGATGCCGGTGACGTGGCAAGGTAAAGGGGGGCTCTGGGTGACACTATTGGGGTTGGTGGCGCTGATGGGTTGTTTCATTGGTCATGCGGAGGCGTTTACGGACCTTTCGCTGCCATTCGGACTTGAACCATCGGTTGCCAAGTCGCGGTTCTCATCGCTTGTCGGTGGAGTCCGTGCCAGGGATATACATGTGTTTGTGATGAAAAATATCAGTGAGGATACGCCGGTCGGAACGGTTCTTGAGACTTTTAAGGCTCACGATCCGAGTAATCCAATGTACAACTTCTCGTAAGTCTTTTTTTTTGGGTGAGACGGGTGGGATTATAAATTTTACCGAAAATAGAATAAATTTCCAACATATCTATCCAAAAACGAGTTTTCTAGCTGGAAAACTAGCCGAGATACAGCGGTTTTACGTTTTACTGAGGCTTAGAGTTTTTGTAGTTTGTAGTCGCTAAGCCTCAGTAAAAATGTTCAAGCTTCACGTGAAAATTCGTTAAACTTTTAATTTTCACGTACGTTTTGAAGATTTTCCTGAGGCTTAGCAATTTATGTAGTTTGTAGTCGCTGAAATTTCCAGCATTTCTATCCAAAAACGACTTTTCTAGCTGAAAAACTAGCCGAGTTATAGTGCTTTTAAGTTTTACTGAGGCTTAGAGAATTTTCGTAGTTTGTAGTCTAAGCCTCAGTAAAAATTTTACGTGAAAAAAAATTCTTTCAAATTTTAATTTCCACGTATTTTTTTCTCAAATTTTTCACGTGTTAAAAAAATCTTGAGGCTTAGCGTTTTGTAGTTTGTAGTCGGTAAGC</canonical>
            <polymorphic>GTCACAACGTGACGGCTTCTCGCTGCGGATTCGCGTCTCCGACGGACGACACGATGCTGAAGCGGCGTGCCACGTGGCACTCGTCGATCGCAACGACCACGCGCCACACATTCACGGAGCCACAGAGCACAGAATCAGAGAAGACGTGCCGAGAGGAACAGTCATCGGACAGTACACGACGAGCGACAAGGATGCCGGTGACGTGGCAAGGTAAAGGGGGGCTCTGGGTGACACTATTGGGGTTGGTGGCGCTGATGGGTTGTTTCATTGGTCATGCGGAGGCGTTTACGGACCTTTCGCTGCCATTCGGACTTGAACCATCGGTTGCCAAGTCGCGGTTCTCATCGCTTGTCGGTGGAGTCCGTGCCAGGGATATACATGTGTTTGTGATGAAAAATATCAGTGAGGATACGCCGGTCGGAACGGTTCTTGAGACTTTTAAGGCTCACGATCCGAGTAATCCAATGTACAACTTCTCGTAAGTCTTTTTTTTTGGGTGRGACGGGTGGGATTATAAATTTTACCGAAAATAGAATAAATTTCCAACATATCTATCCAAAAACGAGTTTTCTAGCTGGAAAACTAGCCGAGATACAGCGGTTTTACGTTTTACTGAGGCTTAGAGTTTTTGTAGTTTGTAGTCGCTAAGCCTCAGTAAAAATGTTCAAGCTTCACGTGAAAATTCGTTAAACTTTTAATTTTCACGTACGTTTTGAAGATTTTCCTGAGGCTTAGCAATTTATGTAGTTTGTAGTCGCTGAAATTTCCAGCATTTCTATCCAAAAACGACTTTTCTAGCTGAAAAACTAGCCGAGTTATAGTGCTTTTAAGTTTTACTGAGGCTTAGAGAATTTTCGTAGTTTGTAGTCTAAGCCTCAGTAAAAATTTTACGTGAAAAAAAATTCTTTCAAATTTTAATTTCCACGTATTTTTTTCTCAAATTTTTCACGTGTTAAAAAAATCTTGAGGCTTAGCGTTTTGTAGTTTGTAGTCGGTAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGACTTTTAAGGCTCACGAT</pcr_primer_p1>
		<pcr_primer_p2>CAAAAATCAATGAGGGAATG</pcr_primer_p2>
		<pcr_amplicon_size>759</pcr_amplicon_size>
		<canonical_amplicon>GAGACTTTTAAGGCTCACGATCCGAGTAATCCAATGTACAACTTCTCGTAAGTCTTTTTTTTTGGGTGAGACGGGTGGGATTATAAAT</canonical_amplicon>
		<polymorphic_amplicon>GAGACTTTTAAGGCTCACGATCCGAGTAATCCAATGTACAACTTCTCGTAAGTCTTTTTTTTTGGGTGRGACGGGTGGGATTATAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb556</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>451920</contig_pos>
        <strand>+</strand>
        <context>TAAGTCTTTT[G/T]TTTTGGGTGR</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAAGGCTCACGATCCGAGTAATCCAATGTACAACTTCTCGTAAGTCTTTT</left_flank>
        <right_flank>TTTTGGGTGAGACGGGTGGGATTATAAATTTTACCGAAAATAGAATAAAT</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGAGGATCCGTCACAACGTGACGGCTTCTCGCTGCGGATTCGCGTCTCCGACGGACGACACGATGCTGAAGCGGCGTGCCACGTGGCACTCGTCGATCGCAACGACCACGCGCCACACATTCACGGAGCCACAGAGCACAGAATCAGAGAAGACGTGCCGAGAGGAACAGTCATCGGACAGTACACGACGAGCGACAAGGATGCCGGTGACGTGGCAAGGTAAAGGGGGGCTCTGGGTGACACTATTGGGGTTGGTGGCGCTGATGGGTTGTTTCATTGGTCATGCGGAGGCGTTTACGGACCTTTCGCTGCCATTCGGACTTGAACCATCGGTTGCCAAGTCGCGGTTCTCATCGCTTGTCGGTGGAGTCCGTGCCAGGGATATACATGTGTTTGTGATGAAAAATATCAGTGAGGATACGCCGGTCGGAACGGTTCTTGAGACTTTTAAGGCTCACGATCCGAGTAATCCAATGTACAACTTCTCGTAAGTCTTTTTTTTTGGGTGAGACGGGTGGGATTATAAATTTTACCGAAAATAGAATAAATTTCCAACATATCTATCCAAAAACGAGTTTTCTAGCTGGAAAACTAGCCGAGATACAGCGGTTTTACGTTTTACTGAGGCTTAGAGTTTTTGTAGTTTGTAGTCGCTAAGCCTCAGTAAAAATGTTCAAGCTTCACGTGAAAATTCGTTAAACTTTTAATTTTCACGTACGTTTTGAAGATTTTCCTGAGGCTTAGCAATTTATGTAGTTTGTAGTCGCTGAAATTTCCAGCATTTCTATCCAAAAACGACTTTTCTAGCTGAAAAACTAGCCGAGTTATAGTGCTTTTAAGTTTTACTGAGGCTTAGAGAATTTTCGTAGTTTGTAGTCTAAGCCTCAGTAAAAATTTTACGTGAAAAAAAATTCTTTCAAATTTTAATTTCCACGTATTTTTTTCTCAAATTTTTCACGTGTTAAAAAAATCTTGAGGCTTAGCGTTTTGTAGTTTGTA</canonical>
            <polymorphic>ACGAGGATCCGTCACAACGTGACGGCTTCTCGCTGCGGATTCGCGTCTCCGACGGACGACACGATGCTGAAGCGGCGTGCCACGTGGCACTCGTCGATCGCAACGACCACGCGCCACACATTCACGGAGCCACAGAGCACAGAATCAGAGAAGACGTGCCGAGAGGAACAGTCATCGGACAGTACACGACGAGCGACAAGGATGCCGGTGACGTGGCAAGGTAAAGGGGGGCTCTGGGTGACACTATTGGGGTTGGTGGCGCTGATGGGTTGTTTCATTGGTCATGCGGAGGCGTTTACGGACCTTTCGCTGCCATTCGGACTTGAACCATCGGTTGCCAAGTCGCGGTTCTCATCGCTTGTCGGTGGAGTCCGTGCCAGGGATATACATGTGTTTGTGATGAAAAATATCAGTGAGGATACGCCGGTCGGAACGGTTCTTGAGACTTTTAAGGCTCACGATCCGAGTAATCCAATGTACAACTTCTCGTAAGTCTTTTKTTTTGGGTGAGACGGGTGGGATTATAAATTTTACCGAAAATAGAATAAATTTCCAACATATCTATCCAAAAACGAGTTTTCTAGCTGGAAAACTAGCCGAGATACAGCGGTTTTACGTTTTACTGAGGCTTAGAGTTTTTGTAGTTTGTAGTCGCTAAGCCTCAGTAAAAATGTTCAAGCTTCACGTGAAAATTCGTTAAACTTTTAATTTTCACGTACGTTTTGAAGATTTTCCTGAGGCTTAGCAATTTATGTAGTTTGTAGTCGCTGAAATTTCCAGCATTTCTATCCAAAAACGACTTTTCTAGCTGAAAAACTAGCCGAGTTATAGTGCTTTTAAGTTTTACTGAGGCTTAGAGAATTTTCGTAGTTTGTAGTCTAAGCCTCAGTAAAAATTTTACGTGAAAAAAAATTCTTTCAAATTTTAATTTCCACGTATTTTTTTCTCAAATTTTTCACGTGTTAAAAAAATCTTGAGGCTTAGCGTTTTGTAGTTTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGACTTTTAAGGCTCACGAT</pcr_primer_p1>
		<pcr_primer_p2>CAAAAATCAATGAGGGAATG</pcr_primer_p2>
		<pcr_amplicon_size>759</pcr_amplicon_size>
		<canonical_amplicon>GAGACTTTTAAGGCTCACGATCCGAGTAATCCAATGTACAACTTCTCGTAAGTCTTTTTTTTTGGGTGAGACGGGTGG</canonical_amplicon>
		<polymorphic_amplicon>GAGACTTTTAAGGCTCACGATCCGAGTAATCCAATGTACAACTTCTCGTAAGTCTTTTKTTTTGGGTGAGACGGGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb557</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>523019</contig_pos>
        <strand>+</strand>
        <context>GGCAATCTCT[C/T]CCAGACGTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAAAAATTCCAAAAATTATTCCCAAACGCAAAAGTTGTGGCAATCTCT</left_flank>
        <right_flank>CCAGACGTTCACTCATTACACAGACAGGGCCAATATCTTTTGATACAAGT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAAATTTTTGTAATTTATCAACAGGATTTTCTCTAAAAATCTAATTTCCCCAAAAAGCGTGATTTTGAGAGTGGAACAATGGTTTTGTGGATGAGAAAAAACGTTTTTTCAGGAAATTCGGTCAGGAAATTTTTCTGAGTCACGCAGTCGACTCCGAATTTTTCGAGGTATCATTTCTCAAGAAGGGCTACAACTTTCATGTTGACACCTTTTCATGAAATTTGACCTAAATAGGTGTTCTAGTGAAACTTCAGGGTGGAACAATGATTATGTGGACTGTATTAGAGATTTCTAGCTGAAAATTTCAGAATATACTTAACAAAACTGGAGCTTCATTTTTGTAGTTGACAACTTTTTCGAAAAATTAGGTCCTGGTGAGATATTTCGATTTATTTCCCACGTAAACCTTTCTAAATAAGCTCCGCCCATTTTTATCGATTTTGGAATTTTCAAAAATTCCAAAAATTATTCCCAAACGCAAAAGTTGTGGCAATCTCTCCCAGACGTTCACTCATTACACAGACAGGGCCAATATCTTTTGATACAAGTAAAAAGGATTACTGTAGTTTTAATTTTTAAAAATAAATCATTCCCAGATTTCTGCAGTTTCACTAATGACGGACGGTTTTGTGTTGATTGTGTTCTACGTTGCCACGTGTGTTTGTAAGTATCGGGAAATGCGCAAAGGCACATTTCCGGTGCCTTGGCGTCTTTCTAGTGTTTGGCAACAAAAATGCGTCAAGGCACCGGAAATGCACCAAGACTCTAGAAGGGCGCAAAACACGGTACCTTAGTGTCTTTCTAGAGCTTGGCACGAAAAAAAAGCACCGGAGATGCGCAAAGGATCCGGAAAAGCGCAAATCACGGGACCTTGGCGTCTTTCTAGAGATTGGCACGAAAAGCGCACCAAGACATCGGAAATAGGTCAAGGCACAGGCACTAGAAAGGCGCAAAGGATCCGGAAAAGAGCAAAAAACGGTTTCTTGGCGCATTTCTCGT</canonical>
            <polymorphic>CGAAATTTTTGTAATTTATCAACAGGATTTTCTCTAAAAATCTAATTTCCCCAAAAAGCGTGATTTTGAGAGTGGAACAATGGTTTTGTGGATGAGAAAAAACGTTTTTTCAGGAAATTCGGTCAGGAAATTTTTCTGAGTCACGCAGTCGACTCCGAATTTTTCGAGGTATCATTTCTCAAGAAGGGCTACAACTTTCATGTTGACACCTTTTCATGAAATTTGACCTAAATAGGTGTTCTAGTGAAACTTCAGGGTGGAACAATGATTATGTGGACTGTATTAGAGATTTCTAGCTGAAAATTTCAGAATATACTTAACAAAACTGGAGCTTCATTTTTGTAGTTGACAACTTTTTCGAAAAATTAGGTCCTGGTGAGATATTTCGATTTATTTCCCACGTAAACCTTTCTAAATAAGCTCCGCCCATTTTTATCGATTTTGGAATTTTCAAAAATTCCAAAAATTATTCCCAAACGCAAAAGTTGTGGCAATCTCTYCCAGACGTTCACTCATTACACAGACAGGGCCAATATCTTTTGATACAAGTAAAAAGGATTACTGTAGTTTTAATTTTTAAAAATAAATCATTCCCAGATTTCTGCAGTTTCACTAATGACGGACGGTTTTGTGTTGATTGTGTTCTACGTTGCCACGTGTGTTTGTAAGTATCGGGAAATGCGCAAAGGCACATTTCCGGTGCCTTGGCGTCTTTCTAGTGTTTGGCAACAAAAATGCGTCAAGGCACCGGAAATGCACCAAGACTCTAGAAGGGCGCAAAACACGGTACCTTAGTGTCTTTCTAGAGCTTGGCACGAAAAAAAAGCACCGGAGATGCGCAAAGGATCCGGAAAAGCGCAAATCACGGGACCTTGGCGTCTTTCTAGAGATTGGCACGAAAAGCGCACCAAGACATCGGAAATAGGTCAAGGCACAGGCACTAGAAAGGCGCAAAGGATCCGGAAAAGAGCAAAAAACGGTTTCTTGGCGCATTTCTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACATTAGGTAGGCATGTTGTT</pcr_primer_p1>
		<pcr_primer_p2>AGTAATCCTTTTTACTTGTATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>824</pcr_amplicon_size>
		<canonical_amplicon>TCCCAGACGTTCACTCATTACACAGACAGGGCCAATATCTTTTGATACAAGTAAAAAGGATTACT</canonical_amplicon>
		<polymorphic_amplicon>TYCCAGACGTTCACTCATTACACAGACAGGGCCAATATCTTTTGATACAAGTAAAAAGGATTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb558</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>523040</contig_pos>
        <strand>+</strand>
        <context>ACTCATTACA[C/G]AGACAGRGCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCCCAAACGCAAAAGTTGTGGCAATCTCTCCCAGACGTTCACTCATTACA</left_flank>
        <right_flank>AGACAGGGCCAATATCTTTTGATACAAGTAAAAAGGATTACTGTAGTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGGATTTTCTCTAAAAATCTAATTTCCCCAAAAAGCGTGATTTTGAGAGTGGAACAATGGTTTTGTGGATGAGAAAAAACGTTTTTTCAGGAAATTCGGTCAGGAAATTTTTCTGAGTCACGCAGTCGACTCCGAATTTTTCGAGGTATCATTTCTCAAGAAGGGCTACAACTTTCATGTTGACACCTTTTCATGAAATTTGACCTAAATAGGTGTTCTAGTGAAACTTCAGGGTGGAACAATGATTATGTGGACTGTATTAGAGATTTCTAGCTGAAAATTTCAGAATATACTTAACAAAACTGGAGCTTCATTTTTGTAGTTGACAACTTTTTCGAAAAATTAGGTCCTGGTGAGATATTTCGATTTATTTCCCACGTAAACCTTTCTAAATAAGCTCCGCCCATTTTTATCGATTTTGGAATTTTCAAAAATTCCAAAAATTATTCCCAAACGCAAAAGTTGTGGCAATCTCTCCCAGACGTTCACTCATTACACAGACAGGGCCAATATCTTTTGATACAAGTAAAAAGGATTACTGTAGTTTTAATTTTTAAAAATAAATCATTCCCAGATTTCTGCAGTTTCACTAATGACGGACGGTTTTGTGTTGATTGTGTTCTACGTTGCCACGTGTGTTTGTAAGTATCGGGAAATGCGCAAAGGCACATTTCCGGTGCCTTGGCGTCTTTCTAGTGTTTGGCAACAAAAATGCGTCAAGGCACCGGAAATGCACCAAGACTCTAGAAGGGCGCAAAACACGGTACCTTAGTGTCTTTCTAGAGCTTGGCACGAAAAAAAAGCACCGGAGATGCGCAAAGGATCCGGAAAAGCGCAAATCACGGGACCTTGGCGTCTTTCTAGAGATTGGCACGAAAAGCGCACCAAGACATCGGAAATAGGTCAAGGCACAGGCACTAGAAAGGCGCAAAGGATCCGGAAAAGAGCAAAAAACGGTTTCTTGGCGCATTTCTCGTGCCAAGCTCTAGAAAGTCCAC</canonical>
            <polymorphic>ACAGGATTTTCTCTAAAAATCTAATTTCCCCAAAAAGCGTGATTTTGAGAGTGGAACAATGGTTTTGTGGATGAGAAAAAACGTTTTTTCAGGAAATTCGGTCAGGAAATTTTTCTGAGTCACGCAGTCGACTCCGAATTTTTCGAGGTATCATTTCTCAAGAAGGGCTACAACTTTCATGTTGACACCTTTTCATGAAATTTGACCTAAATAGGTGTTCTAGTGAAACTTCAGGGTGGAACAATGATTATGTGGACTGTATTAGAGATTTCTAGCTGAAAATTTCAGAATATACTTAACAAAACTGGAGCTTCATTTTTGTAGTTGACAACTTTTTCGAAAAATTAGGTCCTGGTGAGATATTTCGATTTATTTCCCACGTAAACCTTTCTAAATAAGCTCCGCCCATTTTTATCGATTTTGGAATTTTCAAAAATTCCAAAAATTATTCCCAAACGCAAAAGTTGTGGCAATCTCTCCCAGACGTTCACTCATTACASAGACAGGGCCAATATCTTTTGATACAAGTAAAAAGGATTACTGTAGTTTTAATTTTTAAAAATAAATCATTCCCAGATTTCTGCAGTTTCACTAATGACGGACGGTTTTGTGTTGATTGTGTTCTACGTTGCCACGTGTGTTTGTAAGTATCGGGAAATGCGCAAAGGCACATTTCCGGTGCCTTGGCGTCTTTCTAGTGTTTGGCAACAAAAATGCGTCAAGGCACCGGAAATGCACCAAGACTCTAGAAGGGCGCAAAACACGGTACCTTAGTGTCTTTCTAGAGCTTGGCACGAAAAAAAAGCACCGGAGATGCGCAAAGGATCCGGAAAAGCGCAAATCACGGGACCTTGGCGTCTTTCTAGAGATTGGCACGAAAAGCGCACCAAGACATCGGAAATAGGTCAAGGCACAGGCACTAGAAAGGCGCAAAGGATCCGGAAAAGAGCAAAAAACGGTTTCTTGGCGCATTTCTCGTGCCAAGCTCTAGAAAGTCCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>103 92 90 65 61 53 41 37 31 30 30 27 26 26 22 21 21 19 19 18 16 16 13 13 13 13 12 11 11 11 9 9 8 6 4 2 1</canonical_bands>
                <polymorphic_bands>103 101 90 65 61 53 41 37 31 30 30 27 26 26 22 21 21 19 19 18 16 16 13 13 13 13 12 11 11 11 9 8 6 4 2 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCCAAAAATTATTCCCAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTCCCGATACTTACAAACAC</pcr_primer_p2>
		<pcr_amplicon_size>224</pcr_amplicon_size>
		<canonical_amplicon>ATTCCAAAAATTATTCCCAAACGCAAAAGTTGTGGCAATCTCTCCCAGACGTTCACTCATTACACAGACAGGGCCAATATCTTTTGATACAAGTAAAAAGGATTACTGTAGTTTTAATTTTTAAAAATAAATCATTCCCAGATTTCTGCAGTTTCACTAATGACGGACGGTTTTGTGTTGATTGTGTTCTACGTTGCCACGTGTGTTTGTAAGTATCGGGAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATTCCAAAAATTATTCCCAAACGCAAAAGTTGTGGCAATCTCTCCCAGACGTTCACTCATTACASAGACAGGGCCAATATCTTTTGATACAAGTAAAAAGGATTACTGTAGTTTTAATTTTTAAAAATAAATCATTCCCAGATTTCTGCAGTTTCACTAATGACGGACGGTTTTGTGTTGATTGTGTTCTACGTTGCCACGTGTGTTTGTAAGTATCGGGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb559</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>523047</contig_pos>
        <strand>+</strand>
        <context>ACASAGACAG[A/G]GCCAATATCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCAAAAGTTGTGGCAATCTCTCCCAGACGTTCACTCATTACACAGACAG</left_flank>
        <right_flank>GCCAATATCTTTTGATACAAGTAAAAAGGATTACTGTAGTTTTAATTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTCTAAAAATCTAATTTCCCCAAAAAGCGTGATTTTGAGAGTGGAACAATGGTTTTGTGGATGAGAAAAAACGTTTTTTCAGGAAATTCGGTCAGGAAATTTTTCTGAGTCACGCAGTCGACTCCGAATTTTTCGAGGTATCATTTCTCAAGAAGGGCTACAACTTTCATGTTGACACCTTTTCATGAAATTTGACCTAAATAGGTGTTCTAGTGAAACTTCAGGGTGGAACAATGATTATGTGGACTGTATTAGAGATTTCTAGCTGAAAATTTCAGAATATACTTAACAAAACTGGAGCTTCATTTTTGTAGTTGACAACTTTTTCGAAAAATTAGGTCCTGGTGAGATATTTCGATTTATTTCCCACGTAAACCTTTCTAAATAAGCTCCGCCCATTTTTATCGATTTTGGAATTTTCAAAAATTCCAAAAATTATTCCCAAACGCAAAAGTTGTGGCAATCTCTCCCAGACGTTCACTCATTACACAGACAGGGCCAATATCTTTTGATACAAGTAAAAAGGATTACTGTAGTTTTAATTTTTAAAAATAAATCATTCCCAGATTTCTGCAGTTTCACTAATGACGGACGGTTTTGTGTTGATTGTGTTCTACGTTGCCACGTGTGTTTGTAAGTATCGGGAAATGCGCAAAGGCACATTTCCGGTGCCTTGGCGTCTTTCTAGTGTTTGGCAACAAAAATGCGTCAAGGCACCGGAAATGCACCAAGACTCTAGAAGGGCGCAAAACACGGTACCTTAGTGTCTTTCTAGAGCTTGGCACGAAAAAAAAGCACCGGAGATGCGCAAAGGATCCGGAAAAGCGCAAATCACGGGACCTTGGCGTCTTTCTAGAGATTGGCACGAAAAGCGCACCAAGACATCGGAAATAGGTCAAGGCACAGGCACTAGAAAGGCGCAAAGGATCCGGAAAAGAGCAAAAAACGGTTTCTTGGCGCATTTCTCGTGCCAAGCTCTAGAAAGTCCACAAAGCAC</canonical>
            <polymorphic>TTTCTCTAAAAATCTAATTTCCCCAAAAAGCGTGATTTTGAGAGTGGAACAATGGTTTTGTGGATGAGAAAAAACGTTTTTTCAGGAAATTCGGTCAGGAAATTTTTCTGAGTCACGCAGTCGACTCCGAATTTTTCGAGGTATCATTTCTCAAGAAGGGCTACAACTTTCATGTTGACACCTTTTCATGAAATTTGACCTAAATAGGTGTTCTAGTGAAACTTCAGGGTGGAACAATGATTATGTGGACTGTATTAGAGATTTCTAGCTGAAAATTTCAGAATATACTTAACAAAACTGGAGCTTCATTTTTGTAGTTGACAACTTTTTCGAAAAATTAGGTCCTGGTGAGATATTTCGATTTATTTCCCACGTAAACCTTTCTAAATAAGCTCCGCCCATTTTTATCGATTTTGGAATTTTCAAAAATTCCAAAAATTATTCCCAAACGCAAAAGTTGTGGCAATCTCTCCCAGACGTTCACTCATTACACAGACAGRGCCAATATCTTTTGATACAAGTAAAAAGGATTACTGTAGTTTTAATTTTTAAAAATAAATCATTCCCAGATTTCTGCAGTTTCACTAATGACGGACGGTTTTGTGTTGATTGTGTTCTACGTTGCCACGTGTGTTTGTAAGTATCGGGAAATGCGCAAAGGCACATTTCCGGTGCCTTGGCGTCTTTCTAGTGTTTGGCAACAAAAATGCGTCAAGGCACCGGAAATGCACCAAGACTCTAGAAGGGCGCAAAACACGGTACCTTAGTGTCTTTCTAGAGCTTGGCACGAAAAAAAAGCACCGGAGATGCGCAAAGGATCCGGAAAAGCGCAAATCACGGGACCTTGGCGTCTTTCTAGAGATTGGCACGAAAAGCGCACCAAGACATCGGAAATAGGTCAAGGCACAGGCACTAGAAAGGCGCAAAGGATCCGGAAAAGAGCAAAAAACGGTTTCTTGGCGCATTTCTCGTGCCAAGCTCTAGAAAGTCCACAAAGCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>341 341 160 158</canonical_bands>
                <polymorphic_bands>499 341 160</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>279 198 160 109 108 89 35 22</canonical_bands>
                <polymorphic_bands>388 198 160 108 89 35 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCCAAAAATTATTCCCAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTCCCGATACTTACAAACAC</pcr_primer_p2>
		<pcr_amplicon_size>224</pcr_amplicon_size>
		<canonical_amplicon>ATTCCAAAAATTATTCCCAAACGCAAAAGTTGTGGCAATCTCTCCCAGACGTTCACTCATTACACAGACAGGGCCAATATCTTTTGATACAAGTAAAAAGGATTACTGTAGTTTTAATTTTTAAAAATAAATCATTCCCAGATTTCTGCAGTTTCACTAATGACGGACGGTTTTGTGTTGATTGTGTTCTACGTTGCCACGTGTGTTTGTAAGTATCGGGAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATTCCAAAAATTATTCCCAAACGCAAAAGTTGTGGCAATCTCTCCCAGACGTTCACTCATTACACAGACAGRGCCAATATCTTTTGATACAAGTAAAAAGGATTACTGTAGTTTTAATTTTTAAAAATAAATCATTCCCAGATTTCTGCAGTTTCACTAATGACGGACGGTTTTGTGTTGATTGTGTTCTACGTTGCCACGTGTGTTTGTAAGTATCGGGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb573</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>602931</contig_pos>
        <strand>+</strand>
        <context>GAAGAGAAGA[A/G]RGACGCAAYA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAGATGGTCAAGGGTATATCGAATGGATAAAGCGATATAGAAGAGAAGA</left_flank>
        <right_flank>AGACGCAATATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAACCTTGGAAACTTCAAATCGCTGTCTCTCGGTTCCTAGATGCGCTAGAAACGTGATTTTTGGACAGAATTAAAGAAAATGTTGGCTGTTTGTTTTTATTAGAAACAAATGTTTACAAAATTGTTCTGAAAAAACCTCAAAATAAATTTGAAATCGAATCAAATTCGCTAAAAAGCGCGTTTTTGTATATTTTACTATAGCTATAGATGAAAGGAAAATTTAAAACTTTAAAATGTTTAAAGATTCACCAATGACAATCAGTTGTATCAATTGCATGGTGGCTTCGACATAACTAGAGCTGATGGAAGGATGGCAACCATTGGACACCATGGATACAACCTGTCCCACGAAGATAATCCATGGCAACAGTTTGAGATTGAAGAATGTGCAAGAATCTCAAGAGTGTGGAATTTGGAAGAAAGTGATGAGGAAGATGAGATTGAAAAGGGAGATGGTCAAGGGTATATCGAATGGATAAAGCGATATAGAAGAGAAGAAAGACGCAATATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTTCCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATTTTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAACCTTAACAATATACGATAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCATTATGTTGTCATCTTTATCTAATTTTGCACTTTTTTTTCAATATTTCAAAATAAATTGTTCTTGCTTTTTCCTTTCCTTTTTCCTTATTTGCATACATATATTACTGTGAAACTAGGCCACCCGACCCGCCAACTTTGAGCCCATGTATCTTGATTCTTGTGAGAGATATCAAAAAGTAATCAACTGATAAACTGCTTCTCATAATATCAGCAATATTCTATTAGTTTATTACTTTTTGTTATC</canonical>
            <polymorphic>CTAACCTTGGAAACTTCAAATCGCTGTCTCTCGGTTCCTAGATGCGCTAGAAACGTGATTTTTGGACAGAATTAAAGAAAATGTTGGCTGTTTGTTTTTATTAGAAACAAATGTTTACAAAATTGTTCTGAAAAAACCTCAAAATAAATTTGAAATCGAATCAAATTCGCTAAAAAGCGCGTTTTTGTATATTTTACTATAGCTATAGATGAAAGGAAAATTTAAAACTTTAAAATGTTTAAAGATTCACCAATGACAATCAGTTGTATCAATTGCATGGTGGCTTCGACATAACTAGAGCTGATGGAAGGATGGCAACCATTGGACACCATGGATACAACCTGTCCCACGAAGATAATCCATGGCAACAGTTTGAGATTGAAGAATGTGCAAGAATCTCAAGAGTGTGGAATTTGGAAGAAAGTGATGAGGAAGATGAGATTGAAAAGGGAGATGGTCAAGGGTATATCGAATGGATAAAGCGATATAGAAGAGAAGARAGACGCAATATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTTCCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATTTTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAACCTTAACAATATACGATAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCATTATGTTGTCATCTTTATCTAATTTTGCACTTTTTTTTCAATATTTCAAAATAAATTGTTCTTGCTTTTTCCTTTCCTTTTTCCTTATTTGCATACATATATTACTGTGAAACTAGGCCACCCGACCCGCCAACTTTGAGCCCATGTATCTTGATTCTTGTGAGAGATATCAAAAAGTAATCAACTGATAAACTGCTTCTCATAATATCAGCAATATTCTATTAGTTTATTACTTTTTGTTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATTGAAAAGGGAGATGGT</pcr_primer_p1>
		<pcr_primer_p2>TGATAAGAAAAACTGCTAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>318</pcr_amplicon_size>
		<canonical_amplicon>AGATTGAAAAGGGAGATGGTCAAGGGTATATCGAATGGATAAAGCGATATAGAAGAGAAGAAAGACGCAATATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTTCCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATTTTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAACCTTAACAATATACGATAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCA</canonical_amplicon>
		<polymorphic_amplicon>AGATTGAAAAGGGAGATGGTCAAGGGTATATCGAATGGATAAAGCGATATAGAAGAGAAGARAGACGCAATATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTTCCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATTTTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAACCTTAACAATATACGATAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb574</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>602932</contig_pos>
        <strand>+</strand>
        <context>AAGAGAAGAR[A/G]GACGCAAYAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGATGGTCAAGGGTATATCGAATGGATAAAGCGATATAGAAGAGAAGAA</left_flank>
        <right_flank>GACGCAATATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACCTTGGAAACTTCAAATCGCTGTCTCTCGGTTCCTAGATGCGCTAGAAACGTGATTTTTGGACAGAATTAAAGAAAATGTTGGCTGTTTGTTTTTATTAGAAACAAATGTTTACAAAATTGTTCTGAAAAAACCTCAAAATAAATTTGAAATCGAATCAAATTCGCTAAAAAGCGCGTTTTTGTATATTTTACTATAGCTATAGATGAAAGGAAAATTTAAAACTTTAAAATGTTTAAAGATTCACCAATGACAATCAGTTGTATCAATTGCATGGTGGCTTCGACATAACTAGAGCTGATGGAAGGATGGCAACCATTGGACACCATGGATACAACCTGTCCCACGAAGATAATCCATGGCAACAGTTTGAGATTGAAGAATGTGCAAGAATCTCAAGAGTGTGGAATTTGGAAGAAAGTGATGAGGAAGATGAGATTGAAAAGGGAGATGGTCAAGGGTATATCGAATGGATAAAGCGATATAGAAGAGAAGAAAGACGCAATATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTTCCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATTTTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAACCTTAACAATATACGATAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCATTATGTTGTCATCTTTATCTAATTTTGCACTTTTTTTTCAATATTTCAAAATAAATTGTTCTTGCTTTTTCCTTTCCTTTTTCCTTATTTGCATACATATATTACTGTGAAACTAGGCCACCCGACCCGCCAACTTTGAGCCCATGTATCTTGATTCTTGTGAGAGATATCAAAAAGTAATCAACTGATAAACTGCTTCTCATAATATCAGCAATATTCTATTAGTTTATTACTTTTTGTTATCT</canonical>
            <polymorphic>TAACCTTGGAAACTTCAAATCGCTGTCTCTCGGTTCCTAGATGCGCTAGAAACGTGATTTTTGGACAGAATTAAAGAAAATGTTGGCTGTTTGTTTTTATTAGAAACAAATGTTTACAAAATTGTTCTGAAAAAACCTCAAAATAAATTTGAAATCGAATCAAATTCGCTAAAAAGCGCGTTTTTGTATATTTTACTATAGCTATAGATGAAAGGAAAATTTAAAACTTTAAAATGTTTAAAGATTCACCAATGACAATCAGTTGTATCAATTGCATGGTGGCTTCGACATAACTAGAGCTGATGGAAGGATGGCAACCATTGGACACCATGGATACAACCTGTCCCACGAAGATAATCCATGGCAACAGTTTGAGATTGAAGAATGTGCAAGAATCTCAAGAGTGTGGAATTTGGAAGAAAGTGATGAGGAAGATGAGATTGAAAAGGGAGATGGTCAAGGGTATATCGAATGGATAAAGCGATATAGAAGAGAAGAARGACGCAATATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTTCCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATTTTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAACCTTAACAATATACGATAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCATTATGTTGTCATCTTTATCTAATTTTGCACTTTTTTTTCAATATTTCAAAATAAATTGTTCTTGCTTTTTCCTTTCCTTTTTCCTTATTTGCATACATATATTACTGTGAAACTAGGCCACCCGACCCGCCAACTTTGAGCCCATGTATCTTGATTCTTGTGAGAGATATCAAAAAGTAATCAACTGATAAACTGCTTCTCATAATATCAGCAATATTCTATTAGTTTATTACTTTTTGTTATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGATGGTCAAGGGTATATCG</pcr_primer_p1>
		<pcr_primer_p2>TGATAAGAAAAACTGCTAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>306</pcr_amplicon_size>
		<canonical_amplicon>GAGATGGTCAAGGGTATATCGAATGGATAAAGCGATATAGAAGAGAAGAAAGACGCAATATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTTCCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATTTTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAACCTTAACAATATACGATAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCA</canonical_amplicon>
		<polymorphic_amplicon>GAGATGGTCAAGGGTATATCGAATGGATAAAGCGATATAGAAGAGAAGAARGACGCAATATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTTCCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATTTTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAACCTTAACAATATACGATAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb575</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>602940</contig_pos>
        <strand>+</strand>
        <context>ARRGACGCAA[C/T]ATCTTTATGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAGGGTATATCGAATGGATAAAGCGATATAGAAGAGAAGAAAGACGCAA</left_flank>
        <right_flank>ATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAACTTCAAATCGCTGTCTCTCGGTTCCTAGATGCGCTAGAAACGTGATTTTTGGACAGAATTAAAGAAAATGTTGGCTGTTTGTTTTTATTAGAAACAAATGTTTACAAAATTGTTCTGAAAAAACCTCAAAATAAATTTGAAATCGAATCAAATTCGCTAAAAAGCGCGTTTTTGTATATTTTACTATAGCTATAGATGAAAGGAAAATTTAAAACTTTAAAATGTTTAAAGATTCACCAATGACAATCAGTTGTATCAATTGCATGGTGGCTTCGACATAACTAGAGCTGATGGAAGGATGGCAACCATTGGACACCATGGATACAACCTGTCCCACGAAGATAATCCATGGCAACAGTTTGAGATTGAAGAATGTGCAAGAATCTCAAGAGTGTGGAATTTGGAAGAAAGTGATGAGGAAGATGAGATTGAAAAGGGAGATGGTCAAGGGTATATCGAATGGATAAAGCGATATAGAAGAGAAGAAAGACGCAATATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTTCCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATTTTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAACCTTAACAATATACGATAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCATTATGTTGTCATCTTTATCTAATTTTGCACTTTTTTTTCAATATTTCAAAATAAATTGTTCTTGCTTTTTCCTTTCCTTTTTCCTTATTTGCATACATATATTACTGTGAAACTAGGCCACCCGACCCGCCAACTTTGAGCCCATGTATCTTGATTCTTGTGAGAGATATCAAAAAGTAATCAACTGATAAACTGCTTCTCATAATATCAGCAATATTCTATTAGTTTATTACTTTTTGTTATCTTTCACAGG</canonical>
            <polymorphic>GAAACTTCAAATCGCTGTCTCTCGGTTCCTAGATGCGCTAGAAACGTGATTTTTGGACAGAATTAAAGAAAATGTTGGCTGTTTGTTTTTATTAGAAACAAATGTTTACAAAATTGTTCTGAAAAAACCTCAAAATAAATTTGAAATCGAATCAAATTCGCTAAAAAGCGCGTTTTTGTATATTTTACTATAGCTATAGATGAAAGGAAAATTTAAAACTTTAAAATGTTTAAAGATTCACCAATGACAATCAGTTGTATCAATTGCATGGTGGCTTCGACATAACTAGAGCTGATGGAAGGATGGCAACCATTGGACACCATGGATACAACCTGTCCCACGAAGATAATCCATGGCAACAGTTTGAGATTGAAGAATGTGCAAGAATCTCAAGAGTGTGGAATTTGGAAGAAAGTGATGAGGAAGATGAGATTGAAAAGGGAGATGGTCAAGGGTATATCGAATGGATAAAGCGATATAGAAGAGAAGAAAGACGCAAYATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTTCCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATTTTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAACCTTAACAATATACGATAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCATTATGTTGTCATCTTTATCTAATTTTGCACTTTTTTTTCAATATTTCAAAATAAATTGTTCTTGCTTTTTCCTTTCCTTTTTCCTTATTTGCATACATATATTACTGTGAAACTAGGCCACCCGACCCGCCAACTTTGAGCCCATGTATCTTGATTCTTGTGAGAGATATCAAAAAGTAATCAACTGATAAACTGCTTCTCATAATATCAGCAATATTCTATTAGTTTATTACTTTTTGTTATCTTTCACAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCAAGGGTATATCGAATG</pcr_primer_p1>
		<pcr_primer_p2>TGATAAGAAAAACTGCTAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>GGTCAAGGGTATATCGAATGGATAAAGCGATATAGAAGAGAAGAAAGACGCAATATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTTCCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATTTTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAACCTTAACAATATACGATAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCA</canonical_amplicon>
		<polymorphic_amplicon>GGTCAAGGGTATATCGAATGGATAAAGCGATATAGAAGAGAAGAAAGACGCAAYATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTTCCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATTTTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAACCTTAACAATATACGATAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb576</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>603142</contig_pos>
        <strand>+</strand>
        <context>acaatATACG[A/G]TAATTCCTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATCTATTACAGGAAATGAGATATATTTGCTCAACCTTAACAATATACG</left_flank>
        <right_flank>TAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCATTATG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGGAAAATTTAAAACTTTAAAATGTTTAAAGATTCACCAATGACAATCAGTTGTATCAATTGCATGGTGGCTTCGACATAACTAGAGCTGATGGAAGGATGGCAACCATTGGACACCATGGATACAACCTGTCCCACGAAGATAATCCATGGCAACAGTTTGAGATTGAAGAATGTGCAAGAATCTCAAGAGTGTGGAATTTGGAAGAAAGTGATGAGGAAGATGAGATTGAAAAGGGAGATGGTCAAGGGTATATCGAATGGATAAAGCGATATAGAAGAGAAGAAAGACGCAATATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTTCCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATTTTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAACCTTAACAATATACGATAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCATTATGTTGTCATCTTTATCTAATTTTGCACTTTTTTTTCAATATTTCAAAATAAATTGTTCTTGCTTTTTCCTTTCCTTTTTCCTTATTTGCATACATATATTACTGTGAAACTAGGCCACCCGACCCGCCAACTTTGAGCCCATGTATCTTGATTCTTGTGAGAGATATCAAAAAGTAATCAACTGATAAACTGCTTCTCATAATATCAGCAATATTCTATTAGTTTATTACTTTTTGTTATCTTTCACAGGAACTGAGATAATTGAGTTCAAAGTAATTGGACCTCCCGAGAGGTGAGAGGCAAAGAGGGGAGCACCTGTCTGTTTAAACTTATATATTTCAGTTCCTGTAATAGATATCAAAATATGGTCAACTAACAAACTTTTTCTGATATTATGATAAAAAAATTATCAGTTGACACCTTTGTGGTATCTCTTACTGGAACCAAGATAC</canonical>
            <polymorphic>AAAGGAAAATTTAAAACTTTAAAATGTTTAAAGATTCACCAATGACAATCAGTTGTATCAATTGCATGGTGGCTTCGACATAACTAGAGCTGATGGAAGGATGGCAACCATTGGACACCATGGATACAACCTGTCCCACGAAGATAATCCATGGCAACAGTTTGAGATTGAAGAATGTGCAAGAATCTCAAGAGTGTGGAATTTGGAAGAAAGTGATGAGGAAGATGAGATTGAAAAGGGAGATGGTCAAGGGTATATCGAATGGATAAAGCGATATAGAAGAGAAGAAAGACGCAATATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTTCCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATTTTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAACCTTAACAATATACGRTAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCATTATGTTGTCATCTTTATCTAATTTTGCACTTTTTTTTCAATATTTCAAAATAAATTGTTCTTGCTTTTTCCTTTCCTTTTTCCTTATTTGCATACATATATTACTGTGAAACTAGGCCACCCGACCCGCCAACTTTGAGCCCATGTATCTTGATTCTTGTGAGAGATATCAAAAAGTAATCAACTGATAAACTGCTTCTCATAATATCAGCAATATTCTATTAGTTTATTACTTTTTGTTATCTTTCACAGGAACTGAGATAATTGAGTTCAAAGTAATTGGACCTCCCGAGAGGTGAGAGGCAAAGAGGGGAGCACCTGTCTGTTTAAACTTATATATTTCAGTTCCTGTAATAGATATCAAAATATGGTCAACTAACAAACTTTTTCTGATATTATGATAAAAAAATTATCAGTTGACACCTTTGTGGTATCTCTTACTGGAACCAAGATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTTTATGATTGTGTGGTGAAG</pcr_primer_p1>
		<pcr_primer_p2>TGCAAAATTAGATAAAGATGACA</pcr_primer_p2>
		<pcr_amplicon_size>276</pcr_amplicon_size>
		<canonical_amplicon>ATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTTCCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATTTTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAACCTTAACAATATACGATAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCATTATGTTGTCATCTTTATCTAATTTTGCA</canonical_amplicon>
		<polymorphic_amplicon>ATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTTCCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATTTTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAACCTTAACAATATACGRTAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCATTATGTTGTCATCTTTATCTAATTTTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb577</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>603190</contig_pos>
        <strand>+</strand>
        <context>TCTTATCATT[A/T]TGTTGTCATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGATAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCATT</left_flank>
        <right_flank>TGTTGTCATCTTTATCTAATTTTGCACTTTTTTTTCAATATTTCAAAATA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGTTGTATCAATTGCATGGTGGCTTCGACATAACTAGAGCTGATGGAAGGATGGCAACCATTGGACACCATGGATACAACCTGTCCCACGAAGATAATCCATGGCAACAGTTTGAGATTGAAGAATGTGCAAGAATCTCAAGAGTGTGGAATTTGGAAGAAAGTGATGAGGAAGATGAGATTGAAAAGGGAGATGGTCAAGGGTATATCGAATGGATAAAGCGATATAGAAGAGAAGAAAGACGCAATATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTTCCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATTTTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAACCTTAACAATATACGATAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCATTATGTTGTCATCTTTATCTAATTTTGCACTTTTTTTTCAATATTTCAAAATAAATTGTTCTTGCTTTTTCCTTTCCTTTTTCCTTATTTGCATACATATATTACTGTGAAACTAGGCCACCCGACCCGCCAACTTTGAGCCCATGTATCTTGATTCTTGTGAGAGATATCAAAAAGTAATCAACTGATAAACTGCTTCTCATAATATCAGCAATATTCTATTAGTTTATTACTTTTTGTTATCTTTCACAGGAACTGAGATAATTGAGTTCAAAGTAATTGGACCTCCCGAGAGGTGAGAGGCAAAGAGGGGAGCACCTGTCTGTTTAAACTTATATATTTCAGTTCCTGTAATAGATATCAAAATATGGTCAACTAACAAACTTTTTCTGATATTATGATAAAAAAATTATCAGTTGACACCTTTGTGGTATCTCTTACTGGAACCAAGATACATGAGCTCAAAGTTTACAGGATTTTGTGTACACTGCTCACCAAAATTA</canonical>
            <polymorphic>TCAGTTGTATCAATTGCATGGTGGCTTCGACATAACTAGAGCTGATGGAAGGATGGCAACCATTGGACACCATGGATACAACCTGTCCCACGAAGATAATCCATGGCAACAGTTTGAGATTGAAGAATGTGCAAGAATCTCAAGAGTGTGGAATTTGGAAGAAAGTGATGAGGAAGATGAGATTGAAAAGGGAGATGGTCAAGGGTATATCGAATGGATAAAGCGATATAGAAGAGAAGAAAGACGCAATATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTTCCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATTTTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAACCTTAACAATATACGATAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCATTWTGTTGTCATCTTTATCTAATTTTGCACTTTTTTTTCAATATTTCAAAATAAATTGTTCTTGCTTTTTCCTTTCCTTTTTCCTTATTTGCATACATATATTACTGTGAAACTAGGCCACCCGACCCGCCAACTTTGAGCCCATGTATCTTGATTCTTGTGAGAGATATCAAAAAGTAATCAACTGATAAACTGCTTCTCATAATATCAGCAATATTCTATTAGTTTATTACTTTTTGTTATCTTTCACAGGAACTGAGATAATTGAGTTCAAAGTAATTGGACCTCCCGAGAGGTGAGAGGCAAAGAGGGGAGCACCTGTCTGTTTAAACTTATATATTTCAGTTCCTGTAATAGATATCAAAATATGGTCAACTAACAAACTTTTTCTGATATTATGATAAAAAAATTATCAGTTGACACCTTTGTGGTATCTCTTACTGGAACCAAGATACATGAGCTCAAAGTTTACAGGATTTTGTGTACACTGCTCACCAAAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTTTATGATTGTGTGGTGAAG</pcr_primer_p1>
		<pcr_primer_p2>AAGCAAGAACAATTTATTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>314</pcr_amplicon_size>
		<canonical_amplicon>ATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTTCCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATTTTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAACCTTAACAATATACGATAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCATTATGTTGTCATCTTTATCTAATTTTGCACTTTTTTTTCAATATTTCAAAATAAATTGTTCTTGCTT</canonical_amplicon>
		<polymorphic_amplicon>ATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTTCCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATTTTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAACCTTAACAATATACGATAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCATTWTGTTGTCATCTTTATCTAATTTTGCACTTTTTTTTCAATATTTCAAAATAAATTGTTCTTGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb578</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>605008</contig_pos>
        <strand></strand>
        <context>ctaattatct[C/T]aatttctaga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCT</left_flank>
        <right_flank>AATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAA</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTTTCGTTGAAAAATCGGAATTTTTGGTTCCAAAAAAGCTGAGAACTTTCTAGAAAAAGGGCTAAAATTGTGATGGAATTTGATAAAAAGCTCTGAAACTTAAAAACTAGCCAAAAAATTGGATTATTTGAAAGTTTTTAGAAAATTCATAATTCCCAAAAAATTCAAATTTTCTAAAATTCCATTTTAATGCATTTCCTGTCTTTTTAATCTATTTTTTCATCTAATTCATTTTCTTATTCTTTTCTCGATTTCAATTCATCATAATTTGTCCCATTCTTTCTTTATCTTGATTAATTATTCCAAAAATCTCGCCCTTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT</canonical>
            <polymorphic>TTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTYAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTTTCGTTGAAAAATCGGAATTTTTGGTTCCAAAAAAGCTGAGAACTTTCTAGAAAAAGGGCTAAAATTGTGATGGAATTTGATAAAAAGCTCTGAAACTTAAAAACTAGCCAAAAAATTGGATTATTTGAAAGTTTTTAGAAAATTCATAATTCCCAAAAAATTCAAATTTTCTAAAATTCCATTTTAATGCATTTCCTGTCTTTTTAATCTATTTTTTCATCTAATTCATTTTCTTATTCTTTTCTCGATTTCAATTCATCATAATTTGTCCCATTCTTTCTTTATCTTGATTAATTATTCCAAAAATCTCGCCCTTCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTACCGAGAACCAAGATATG</pcr_primer_p1>
		<pcr_primer_p2>CACAATTTTAGCCCTTTTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>CTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTTTCGTTGAAAAATCGGAATTTTTGGTTCCAAAAAAGCTGAGAACTTTCTAGAAAAAGGGCTAAAATTGTG</canonical_amplicon>
		<polymorphic_amplicon>CTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTYAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTTTCGTTGAAAAATCGGAATTTTTGGTTCCAAAAAAGCTGAGAACTTTCTAGAAAAAGGGCTAAAATTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb579</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>604959</contig_pos>
        <strand>+</strand>
        <context>TGGAGCGCYA[A/T]GAGGGGGGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCA</left_flank>
        <right_flank>GAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTTTCGTTGAAAAATCGGAATTTTTGGTTCCAAAAAAGCTGAGAACTTTCTAGAAAAAGGGCTAAAATTGTGATGGAATTTGATAAAAAGCTCTGAAACTTAAAAACTAGCCAAAAAATTGGATTATTTGAAAGTTTTTAGAAAATTCATAATTCCCAAAAAATTCAAATTTTCTAAAATTCCATTTTAATGCATTTCCTGTCTTTTTAATCTATTTTTTCATCTAATTCATTTTCTTATTCTTTTCTCGATTTCAATTCATCATAATTTGTCCCATTCTTTCTTTATCTTGATTAATTATTCCAAAAATCTCGCC</canonical>
            <polymorphic>GAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCAWGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTTTCGTTGAAAAATCGGAATTTTTGGTTCCAAAAAAGCTGAGAACTTTCTAGAAAAAGGGCTAAAATTGTGATGGAATTTGATAAAAAGCTCTGAAACTTAAAAACTAGCCAAAAAATTGGATTATTTGAAAGTTTTTAGAAAATTCATAATTCCCAAAAAATTCAAATTTTCTAAAATTCCATTTTAATGCATTTCCTGTCTTTTTAATCTATTTTTTCATCTAATTCATTTTCTTATTCTTTTCTCGATTTCAATTCATCATAATTTGTCCCATTCTTTCTTTATCTTGATTAATTATTCCAAAAATCTCGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 488 10</canonical_bands>
                <polymorphic_bands>512 488</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTACCGAGAACCAAGATATG</pcr_primer_p1>
		<pcr_primer_p2>CACAATTTTAGCCCTTTTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>CTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTTTCGTTGAAAAATCGGAATTTTTGGTTCCAAAAAAGCTGAGAACTTTCTAGAAAAAGGGCTAAAATTGTG</canonical_amplicon>
		<polymorphic_amplicon>CTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCAWGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTTTCGTTGAAAAATCGGAATTTTTGGTTCCAAAAAAGCTGAGAACTTTCTAGAAAAAGGGCTAAAATTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb580</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>604957</contig_pos>
        <strand>+</strand>
        <context>CRTGGAGCGC[C/T]AWGAGGGGGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGC</left_flank>
        <right_flank>ATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTTTCGTTGAAAAATCGGAATTTTTGGTTCCAAAAAAGCTGAGAACTTTCTAGAAAAAGGGCTAAAATTGTGATGGAATTTGATAAAAAGCTCTGAAACTTAAAAACTAGCCAAAAAATTGGATTATTTGAAAGTTTTTAGAAAATTCATAATTCCCAAAAAATTCAAATTTTCTAAAATTCCATTTTAATGCATTTCCTGTCTTTTTAATCTATTTTTTCATCTAATTCATTTTCTTATTCTTTTCTCGATTTCAATTCATCATAATTTGTCCCATTCTTTCTTTATCTTGATTAATTATTCCAAAAATCTCG</canonical>
            <polymorphic>TAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCYATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTTTCGTTGAAAAATCGGAATTTTTGGTTCCAAAAAAGCTGAGAACTTTCTAGAAAAAGGGCTAAAATTGTGATGGAATTTGATAAAAAGCTCTGAAACTTAAAAACTAGCCAAAAAATTGGATTATTTGAAAGTTTTTAGAAAATTCATAATTCCCAAAAAATTCAAATTTTCTAAAATTCCATTTTAATGCATTTCCTGTCTTTTTAATCTATTTTTTCATCTAATTCATTTTCTTATTCTTTTCTCGATTTCAATTCATCATAATTTGTCCCATTCTTTCTTTATCTTGATTAATTATTCCAAAAATCTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>495 266 161 39 39</canonical_bands>
                <polymorphic_bands>534 266 161 39</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>501 321 178</canonical_bands>
                <polymorphic_bands>679 321</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 490 10</canonical_bands>
                <polymorphic_bands>510 490</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTACCGAGAACCAAGATATG</pcr_primer_p1>
		<pcr_primer_p2>CACAATTTTAGCCCTTTTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>CTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTTTCGTTGAAAAATCGGAATTTTTGGTTCCAAAAAAGCTGAGAACTTTCTAGAAAAAGGGCTAAAATTGTG</canonical_amplicon>
		<polymorphic_amplicon>CTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCYATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTTTCGTTGAAAAATCGGAATTTTTGGTTCCAAAAAAGCTGAGAACTTTCTAGAAAAAGGGCTAAAATTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb581</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>604948</contig_pos>
        <strand>+</strand>
        <context>GAGCGGTCTC[A/G]TGGAGCGCYA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTC</left_flank>
        <right_flank>TGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTTTCGTTGAAAAATCGGAATTTTTGGTTCCAAAAAAGCTGAGAACTTTCTAGAAAAAGGGCTAAAATTGTGATGGAATTTGATAAAAAGCTCTGAAACTTAAAAACTAGCCAAAAAATTGGATTATTTGAAAGTTTTTAGAAAATTCATAATTCCCAAAAAATTCAAATTTTCTAAAATTCCATTTTAATGCATTTCCTGTCTTTTTAATCTATTTTTTCATCTAATTCATTTTCTTATTCTTTTCTCGATTTCAATTCATCATAATTTGTCCCATTCTTTCTTTATCTTGATTAATTATTCCA</canonical>
            <polymorphic>AGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCRTGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTTTCGTTGAAAAATCGGAATTTTTGGTTCCAAAAAAGCTGAGAACTTTCTAGAAAAAGGGCTAAAATTGTGATGGAATTTGATAAAAAGCTCTGAAACTTAAAAACTAGCCAAAAAATTGGATTATTTGAAAGTTTTTAGAAAATTCATAATTCCCAAAAAATTCAAATTTTCTAAAATTCCATTTTAATGCATTTCCTGTCTTTTTAATCTATTTTTTCATCTAATTCATTTTCTTATTCTTTTCTCGATTTCAATTCATCATAATTTGTCCCATTCTTTCTTTATCTTGATTAATTATTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>499 491 10</canonical_bands>
                <polymorphic_bands>509 491</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGTATCTTTACCGAGAACC</pcr_primer_p1>
		<pcr_primer_p2>CACAATTTTAGCCCTTTTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>319</pcr_amplicon_size>
		<canonical_amplicon>TTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTTTCGTTGAAAAATCGGAATTTTTGGTTCCAAAAAAGCTGAGAACTTTCTAGAAAAAGGGCTAAAATTGTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCRTGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTTTCGTTGAAAAATCGGAATTTTTGGTTCCAAAAAAGCTGAGAACTTTCTAGAAAAAGGGCTAAAATTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb582</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>604891</contig_pos>
        <strand></strand>
        <context>TACTAGTTGA[C/T]CACGTTTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGA</left_flank>
        <right_flank>CACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGC</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGTTTAGACTCAAAAATCTCAATTTCCAGAGAAGATTAAAAAAAAGTGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTTTCGTTGAAAAATCGGAATTTTTGGTTCCAAAAAAGCTGAGAACTTTCTAGAAAAAGGGCTAAAATTGTGATGGAATTTGATAAAAAGCTCTGAAACTTAAAAACTAGCCAAAAAATTGGATTATTTGAAAGTTTTTAGAAAATTCATAATTCCCAAAAAATTCAAATTTTCTAAAATTCCATTTTAATGCATTTCCTGTCTTTTTAATCTATTTTTTCATCTAATTCATTTTCTTATTCTTTTCT</canonical>
            <polymorphic>AAAGTTTAGACTCAAAAATCTCAATTTCCAGAGAAGATTAAAAAAAAGTGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGAYCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTTTCGTTGAAAAATCGGAATTTTTGGTTCCAAAAAAGCTGAGAACTTTCTAGAAAAAGGGCTAAAATTGTGATGGAATTTGATAAAAAGCTCTGAAACTTAAAAACTAGCCAAAAAATTGGATTATTTGAAAGTTTTTAGAAAATTCATAATTCCCAAAAAATTCAAATTTTCTAAAATTCCATTTTAATGCATTTCCTGTCTTTTTAATCTATTTTTTCATCTAATTCATTTTCTTATTCTTTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>503 263 181 53</canonical_bands>
                <polymorphic_bands>684 263 53</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>263 257 246 181 53</canonical_bands>
                <polymorphic_bands>427 263 257 53</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAATTTCTCGAAAAGATACCTA</pcr_primer_p1>
		<pcr_primer_p2>CACAATTTTAGCCCTTTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>405</pcr_amplicon_size>
		<canonical_amplicon>TCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTTTCGTTGAAAAATCGGAATTTTTGGTTCCAAAAAAGCTGAGAACTTTCTAGAAAAAGGGCTAAAATTGTG</canonical_amplicon>
		<polymorphic_amplicon>TCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGAYCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTTTCGTTGAAAAATCGGAATTTTTGGTTCCAAAAAAGCTGAGAACTTTCTAGAAAAAGGGCTAAAATTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb583</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>604856</contig_pos>
        <strand>+</strand>
        <context>TTYWAAAAAR[A/G/T]TAGGAAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G/T</alleles>
        <left_flank>TTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAG</left_flank>
        <right_flank>TAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTTTTTTGGAATTCAAAATTTTCGATCCCTAAAGTTTAGACTCAAAAATCTCAATTTCCAGAGAAGATTAAAAAAAAGTGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTTTCGTTGAAAAATCGGAATTTTTGGTTCCAAAAAAGCTGAGAACTTTCTAGAAAAAGGGCTAAAATTGTGATGGAATTTGATAAAAAGCTCTGAAACTTAAAAACTAGCCAAAAAATTGGATTATTTGAAAGTTTTTAGAAAATTCATAATTCCCAAAAAATTCAAATTTTCTAAAATTCCATTTTAATGCATTTCCTGTCTTTTTAATCT</canonical>
            <polymorphic>TTTTTTTTTTTTGGAATTCAAAATTTTCGATCCCTAAAGTTTAGACTCAAAAATCTCAATTTCCAGAGAAGATTAAAAAAAAGTGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGRTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTTTCGTTGAAAAATCGGAATTTTTGGTTCCAAAAAAGCTGAGAACTTTCTAGAAAAAGGGCTAAAATTGTGATGGAATTTGATAAAAAGCTCTGAAACTTAAAAACTAGCCAAAAAATTGGATTATTTGAAAGTTTTTAGAAAATTCATAATTCCCAAAAAATTCAAATTTTCTAAAATTCCATTTTAATGCATTTCCTGTCTTTTTAATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTAAAATGTTGACTGAGAGC</pcr_primer_p1>
		<pcr_primer_p2>ACGGTCCATATCTTGGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGRTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb584</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>604855</contig_pos>
        <strand></strand>
        <context>TTTYWAAAAA[G/A]RTAGGAAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAA</left_flank>
        <right_flank>TTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTTTTTTTGGAATTCAAAATTTTCGATCCCTAAAGTTTAGACTCAAAAATCTCAATTTCCAGAGAAGATTAAAAAAAAGTGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTTTCGTTGAAAAATCGGAATTTTTGGTTCCAAAAAAGCTGAGAACTTTCTAGAAAAAGGGCTAAAATTGTGATGGAATTTGATAAAAAGCTCTGAAACTTAAAAACTAGCCAAAAAATTGGATTATTTGAAAGTTTTTAGAAAATTCATAATTCCCAAAAAATTCAAATTTTCTAAAATTCCATTTTAATGCATTTCCTGTCTTTTTAATC</canonical>
            <polymorphic>ATTTTTTTTTTTTGGAATTCAAAATTTTCGATCCCTAAAGTTTAGACTCAAAAATCTCAATTTCCAGAGAAGATTAAAAAAAAGTGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAARTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTTTCGTTGAAAAATCGGAATTTTTGGTTCCAAAAAAGCTGAGAACTTTCTAGAAAAAGGGCTAAAATTGTGATGGAATTTGATAAAAAGCTCTGAAACTTAAAAACTAGCCAAAAAATTGGATTATTTGAAAGTTTTTAGAAAATTCATAATTCCCAAAAAATTCAAATTTTCTAAAATTCCATTTTAATGCATTTCCTGTCTTTTTAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTAAAATGTTGACTGAGAGC</pcr_primer_p1>
		<pcr_primer_p2>ACGGTCCATATCTTGGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAARTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb585</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>604666</contig_pos>
        <strand>+</strand>
        <context>GTAGGAAATT[C/T]AATGGTCTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATT</left_flank>
        <right_flank>AATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAATTTTCCAAATTTATTTTTTTTCCAATTTGGCGAATTTTTCCAAAAAATAAAATTTTGTTCAAAAAAAAAGGTGTGACTCGATTTGATAAAGAAGAATAACATGTTTATTTTTTTGGTAAATACATACATACATAAAAAATAATGTTCTGTTTATTTCATACTTTTTGAATGTAAACCGGAAAATAATTTTTTTTTTTTGGAATTCAAAATTTTCGATCCCTAAAGTTTAGACTCAAAAATCTCAATTTCCAGAGAAGATTAAAAAAAAGTGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTTTCGTTGAAAAATCGGAATTT</canonical>
            <polymorphic>AGAATTTTCCAAATTTATTTTTTTTCCAATTTGGCGAATTTTTCCAAAAAATAAAATTTTGTTCAAAAAAAAAGGTGTGACTCGATTTGATAAAGAAGAATAACATGTTTATTTTTTTGGTAAATACATACATACATAAAAAATAATGTTCTGTTTATTTCATACTTTTTGAATGTAAACCGGAAAATAATTTTTTTTTTTTGGAATTCAAAATTTTCGATCCCTAAAGTTTAGACTCAAAAATCTCAATTTCCAGAGAAGATTAAAAAAAAGTGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTYAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTTTCGTTGAAAAATCGGAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>199 195 181 150 105 85 25 19 18 9 7 5 2</canonical_bands>
                <polymorphic_bands>380 195 150 105 85 25 19 18 9 7 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATTGTGATAATTAGGGTCAA</pcr_primer_p1>
		<pcr_primer_p2>ATAACTCGGCTCTCAGTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>212</pcr_amplicon_size>
		<canonical_amplicon>GAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTAT</canonical_amplicon>
		<polymorphic_amplicon>GAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTYAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb586</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>604649</contig_pos>
        <strand>+</strand>
        <context>TGRTCARYTA[A/C]TAAAATGTAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTA</left_flank>
        <right_flank>TAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGATTTTTATTTTTCCAGAATTTTCCAAATTTATTTTTTTTCCAATTTGGCGAATTTTTCCAAAAAATAAAATTTTGTTCAAAAAAAAAGGTGTGACTCGATTTGATAAAGAAGAATAACATGTTTATTTTTTTGGTAAATACATACATACATAAAAAATAATGTTCTGTTTATTTCATACTTTTTGAATGTAAACCGGAAAATAATTTTTTTTTTTTGGAATTCAAAATTTTCGATCCCTAAAGTTTAGACTCAAAAATCTCAATTTCCAGAGAAGATTAAAAAAAAGTGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTTTCG</canonical>
            <polymorphic>TAGATTTTTATTTTTCCAGAATTTTCCAAATTTATTTTTTTTCCAATTTGGCGAATTTTTCCAAAAAATAAAATTTTGTTCAAAAAAAAAGGTGTGACTCGATTTGATAAAGAAGAATAACATGTTTATTTTTTTGGTAAATACATACATACATAAAAAATAATGTTCTGTTTATTTCATACTTTTTGAATGTAAACCGGAAAATAATTTTTTTTTTTTGGAATTCAAAATTTTCGATCCCTAAAGTTTAGACTCAAAAATCTCAATTTCCAGAGAAGATTAAAAAAAAGTGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTAMTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATTGTGATAATTAGGGTCAA</pcr_primer_p1>
		<pcr_primer_p2>ATAACTCGGCTCTCAGTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>212</pcr_amplicon_size>
		<canonical_amplicon>GAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTAT</canonical_amplicon>
		<polymorphic_amplicon>GAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTAMTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb587</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>604646</contig_pos>
        <strand>+</strand>
        <context>AAGTGRTCAR[C/T]TAMTAAAATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAA</left_flank>
        <right_flank>TACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTAGATTTTTATTTTTCCAGAATTTTCCAAATTTATTTTTTTTCCAATTTGGCGAATTTTTCCAAAAAATAAAATTTTGTTCAAAAAAAAAGGTGTGACTCGATTTGATAAAGAAGAATAACATGTTTATTTTTTTGGTAAATACATACATACATAAAAAATAATGTTCTGTTTATTTCATACTTTTTGAATGTAAACCGGAAAATAATTTTTTTTTTTTGGAATTCAAAATTTTCGATCCCTAAAGTTTAGACTCAAAAATCTCAATTTCCAGAGAAGATTAAAAAAAAGTGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTT</canonical>
            <polymorphic>TTTTAGATTTTTATTTTTCCAGAATTTTCCAAATTTATTTTTTTTCCAATTTGGCGAATTTTTCCAAAAAATAAAATTTTGTTCAAAAAAAAAGGTGTGACTCGATTTGATAAAGAAGAATAACATGTTTATTTTTTTGGTAAATACATACATACATAAAAAATAATGTTCTGTTTATTTCATACTTTTTGAATGTAAACCGGAAAATAATTTTTTTTTTTTGGAATTCAAAATTTTCGATCCCTAAAGTTTAGACTCAAAAATCTCAATTTCCAGAGAAGATTAAAAAAAAGTGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAAYTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>142 134 133 88 62 49 48 48 36 31 30 28 22 19 18 18 16 16 9 9 9 9 9 7 5 5</canonical_bands>
                <polymorphic_bands>142 134 133 88 62 49 49 48 48 36 30 28 22 19 18 16 16 9 9 9 9 9 7 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGTCAACTAGTAAAATGTAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TAAAAAGTGGTCACTTCGTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>TGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTA</canonical_amplicon>
		<polymorphic_amplicon>TGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAAYTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb588</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>604645</contig_pos>
        <strand>+</strand>
        <context>AAAGTGRTCA[A/G]YTAMTAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCA</left_flank>
        <right_flank>TTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTAGATTTTTATTTTTCCAGAATTTTCCAAATTTATTTTTTTTCCAATTTGGCGAATTTTTCCAAAAAATAAAATTTTGTTCAAAAAAAAAGGTGTGACTCGATTTGATAAAGAAGAATAACATGTTTATTTTTTTGGTAAATACATACATACATAAAAAATAATGTTCTGTTTATTTCATACTTTTTGAATGTAAACCGGAAAATAATTTTTTTTTTTTGGAATTCAAAATTTTCGATCCCTAAAGTTTAGACTCAAAAATCTCAATTTCCAGAGAAGATTAAAAAAAAGTGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTT</canonical>
            <polymorphic>TTTTTAGATTTTTATTTTTCCAGAATTTTCCAAATTTATTTTTTTTCCAATTTGGCGAATTTTTCCAAAAAATAAAATTTTGTTCAAAAAAAAAGGTGTGACTCGATTTGATAAAGAAGAATAACATGTTTATTTTTTTGGTAAATACATACATACATAAAAAATAATGTTCTGTTTATTTCATACTTTTTGAATGTAAACCGGAAAATAATTTTTTTTTTTTGGAATTCAAAATTTTCGATCCCTAAAGTTTAGACTCAAAAATCTCAATTTCCAGAGAAGATTAAAAAAAAGTGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCARTTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>142 134 133 88 62 49 48 48 36 31 30 27 23 19 18 18 16 16 9 9 9 9 9 7 5 5</canonical_bands>
                <polymorphic_bands>142 134 133 88 62 49 49 48 48 36 30 27 23 19 18 16 16 9 9 9 9 9 7 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGTCAACTAGTAAAATGTAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGTGGTCACTTCGTAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>TGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTT</canonical_amplicon>
		<polymorphic_amplicon>TGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCARTTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb589</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>604641</contig_pos>
        <strand>+</strand>
        <context>TAAAAAAGTG[A/G]TCARYTAMTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTG</left_flank>
        <right_flank>TCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTATTTTTAGATTTTTATTTTTCCAGAATTTTCCAAATTTATTTTTTTTCCAATTTGGCGAATTTTTCCAAAAAATAAAATTTTGTTCAAAAAAAAAGGTGTGACTCGATTTGATAAAGAAGAATAACATGTTTATTTTTTTGGTAAATACATACATACATAAAAAATAATGTTCTGTTTATTTCATACTTTTTGAATGTAAACCGGAAAATAATTTTTTTTTTTTGGAATTCAAAATTTTCGATCCCTAAAGTTTAGACTCAAAAATCTCAATTTCCAGAGAAGATTAAAAAAAAGTGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGAT</canonical>
            <polymorphic>CTTATTTTTAGATTTTTATTTTTCCAGAATTTTCCAAATTTATTTTTTTTCCAATTTGGCGAATTTTTCCAAAAAATAAAATTTTGTTCAAAAAAAAAGGTGTGACTCGATTTGATAAAGAAGAATAACATGTTTATTTTTTTGGTAAATACATACATACATAAAAAATAATGTTCTGTTTATTTCATACTTTTTGAATGTAAACCGGAAAATAATTTTTTTTTTTTGGAATTCAAAATTTTCGATCCCTAAAGTTTAGACTCAAAAATCTCAATTTCCAGAGAAGATTAAAAAAAAGTGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGRTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTCAACTAGTAAAATGTAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAGTGGTCACTTCGTAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>TGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTT</canonical_amplicon>
		<polymorphic_amplicon>TGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGRTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb591</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>604630</contig_pos>
        <strand>+</strand>
        <context>AAATAAGATW[A/T]TAAAAAAGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATT</left_flank>
        <right_flank>TAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATAATGTTTCTTATTTTTAGATTTTTATTTTTCCAGAATTTTCCAAATTTATTTTTTTTCCAATTTGGCGAATTTTTCCAAAAAATAAAATTTTGTTCAAAAAAAAAGGTGTGACTCGATTTGATAAAGAAGAATAACATGTTTATTTTTTTGGTAAATACATACATACATAAAAAATAATGTTCTGTTTATTTCATACTTTTTGAATGTAAACCGGAAAATAATTTTTTTTTTTTGGAATTCAAAATTTTCGATCCCTAAAGTTTAGACTCAAAAATCTCAATTTCCAGAGAAGATTAAAAAAAAGTGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAA</canonical>
            <polymorphic>TGATAATGTTTCTTATTTTTAGATTTTTATTTTTCCAGAATTTTCCAAATTTATTTTTTTTCCAATTTGGCGAATTTTTCCAAAAAATAAAATTTTGTTCAAAAAAAAAGGTGTGACTCGATTTGATAAAGAAGAATAACATGTTTATTTTTTTGGTAAATACATACATACATAAAAAATAATGTTCTGTTTATTTCATACTTTTTGAATGTAAACCGGAAAATAATTTTTTTTTTTTGGAATTCAAAATTTTCGATCCCTAAAGTTTAGACTCAAAAATCTCAATTTCCAGAGAAGATTAAAAAAAAGTGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTWTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 283 148 68</canonical_bands>
                <polymorphic_bands>569 283 148</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>299 265 164 108 68 40 37 19</canonical_bands>
                <polymorphic_bands>299 265 232 108 40 37 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGTCAACTAGTAAAATGTAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAGTGGTCACTTCGTAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>TGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTT</canonical_amplicon>
		<polymorphic_amplicon>TGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTWTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb593</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>644662</contig_pos>
        <strand>+</strand>
        <context>CTGAGAATTT[C/G]AGTAAAATCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGTGTTTACCTCTATTGTCGAATGGAACAAAAACTGGGACCTGAGAATTT</left_flank>
        <right_flank>AGTAAAATCTAGTGATTTTTGAAATCAAAAATCAACAAAAAATCGACTTG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGTGTTAAGATAAACTCTCCTAAAATCATTTATAAGCATTTTAGATTGCTACAAAACTGATCAAATTGGTAGTCACCAGTTTTCCGAAGAGGCTAAATTTAGAAAATGCTCGAATTTTTGAGATGAATTGATCTGACGGCTTGAAATTTATGATTTTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGTGGGTGCGTGTGCCTGCGTGCGTGCGCGCGCGTGGGTGTGCCCGTTTGTTCCCGCGTCGGCGACCCTAGAAAAGTCACCAGTAGATCAAATTTTCTCAAATTTTCACAGATGGTCGGAAATAACACCGAAATGATGCCCCATATTTCCGTTTGTCGAGATTTTGATTTTGAAGCCTTCTGGAGACATTCCTTGGTTTCAGCACACTGAAAGTGGTGGAACTTCCCCCCTAGGAAGAGTTGCCGAGGGGAAGAGAGGTGATGTGTTTACCTCTATTGTCGAATGGAACAAAAACTGGGACCTGAGAATTTCAGTAAAATCTAGTGATTTTTGAAATCAAAAATCAACAAAAAATCGACTTGCAAGAAAAACCTTTTTTCGCAATTTTATAACCCCGAAAAAAAACTTTTCCGGAGAACAAGGAACTTTTTTTGTTTGATGAGGGTATAAAAAGCCAGCGGCTCTAAACTTTTTCTTCAGTTTTGAAAACAGAAAATATGAAGCTTTCAATTCTAATATTTTTCTCTTTTCTCTGCCCGATTCTAGCGGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCGGAATCCCATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAGCACGTCCACGACCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGCTATTCAAACGATCTCAAGGCAATTGGTGTGTTAAGGTGAAAGAGACTTCAAACTACAGAAAC</canonical>
            <polymorphic>TGAGTGTTAAGATAAACTCTCCTAAAATCATTTATAAGCATTTTAGATTGCTACAAAACTGATCAAATTGGTAGTCACCAGTTTTCCGAAGAGGCTAAATTTAGAAAATGCTCGAATTTTTGAGATGAATTGATCTGACGGCTTGAAATTTATGATTTTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGTGGGTGCGTGTGCCTGCGTGCGTGCGCGCGCGTGGGTGTGCCCGTTTGTTCCCGCGTCGGCGACCCTAGAAAAGTCACCAGTAGATCAAATTTTCTCAAATTTTCACAGATGGTCGGAAATAACACCGAAATGATGCCCCATATTTCCGTTTGTCGAGATTTTGATTTTGAAGCCTTCTGGAGACATTCCTTGGTTTCAGCACACTGAAAGTGGTGGAACTTCCCCCCTAGGAAGAGTTGCCGAGGGGAAGAGAGGTGATGTGTTTACCTCTATTGTCGAATGGAACAAAAACTGGGACCTGAGAATTTSAGTAAAATCTAGTGATTTTTGAAATCAAAAATCAACAAAAAATCGACTTGCAAGAAAAACCTTTTTTCGCAATTTTATAACCCCGAAAAAAAACTTTTCCGGAGAACAAGGAACTTTTTTTGTTTGATGAGGGTATAAAAAGCCAGCGGCTCTAAACTTTTTCTTCAGTTTTGAAAACAGAAAATATGAAGCTTTCAATTCTAATATTTTTCTCTTTTCTCTGCCCGATTCTAGCGGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCGGAATCCCATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAGCACGTCCACGACCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGCTATTCAAACGATCTCAAGGCAATTGGTGTGTTAAGGTGAAAGAGACTTCAAACTACAGAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAGAGAGGTGATGTGTTTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAAAACTGAAGAAAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GGAAGAGAGGTGATGTGTTTACCTCTATTGTCGAATGGAACAAAAACTGGGACCTGAGAATTTCAGTAAAATCTAGTGATTTTTGAAATCAAAAATCAACAAAAAATCGACTTGCAAGAAAAACCTTTTTTCGCAATTTTATAACCCCGAAAAAAAACTTTTCCGGAGAACAAGGAACTTTTTTTGTTTGATGAGGGTATAAAAAGCCAGCGGCTCTAAACTTTTTCTTCAGTTTTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGAAGAGAGGTGATGTGTTTACCTCTATTGTCGAATGGAACAAAAACTGGGACCTGAGAATTTSAGTAAAATCTAGTGATTTTTGAAATCAAAAATCAACAAAAAATCGACTTGCAAGAAAAACCTTTTTTCGCAATTTTATAACCCCGAAAAAAAACTTTTCCGGAGAACAAGGAACTTTTTTTGTTTGATGAGGGTATAAAAAGCCAGCGGCTCTAAACTTTTTCTTCAGTTTTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb594</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>644812</contig_pos>
        <strand>+</strand>
        <context>AAGCCAGCGG[C/T]TCWAAACTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGAGAACAAGGAACTTTTTTTGTTTGATGAGGGTATAAAAAGCCAGCGG</left_flank>
        <right_flank>TCTAAACTTTTTCTTCAGTTTTGAAAACAGAAAATATGAAGCTTTCAATT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGATTTTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGTGGGTGCGTGTGCCTGCGTGCGTGCGCGCGCGTGGGTGTGCCCGTTTGTTCCCGCGTCGGCGACCCTAGAAAAGTCACCAGTAGATCAAATTTTCTCAAATTTTCACAGATGGTCGGAAATAACACCGAAATGATGCCCCATATTTCCGTTTGTCGAGATTTTGATTTTGAAGCCTTCTGGAGACATTCCTTGGTTTCAGCACACTGAAAGTGGTGGAACTTCCCCCCTAGGAAGAGTTGCCGAGGGGAAGAGAGGTGATGTGTTTACCTCTATTGTCGAATGGAACAAAAACTGGGACCTGAGAATTTCAGTAAAATCTAGTGATTTTTGAAATCAAAAATCAACAAAAAATCGACTTGCAAGAAAAACCTTTTTTCGCAATTTTATAACCCCGAAAAAAAACTTTTCCGGAGAACAAGGAACTTTTTTTGTTTGATGAGGGTATAAAAAGCCAGCGGCTCTAAACTTTTTCTTCAGTTTTGAAAACAGAAAATATGAAGCTTTCAATTCTAATATTTTTCTCTTTTCTCTGCCCGATTCTAGCGGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCGGAATCCCATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAGCACGTCCACGACCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGCTATTCAAACGATCTCAAGGCAATTGGTGTGTTAAGGTGAAAGAGACTTCAAACTACAGAAACTAAAAACGACGAACCTTCAGGTTTTTGTTGGTCGATTGAACCAACCCCAAGCCGAAGCACAATGTGTTGTTCAAGGAGCAGTGTTATCTGGATTGCAGACGGATGAGGAGAGGGTGAAAGTGGCAGGTTAGGGATTTTATAATCTGTTTG</canonical>
            <polymorphic>TATGATTTTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGTGGGTGCGTGTGCCTGCGTGCGTGCGCGCGCGTGGGTGTGCCCGTTTGTTCCCGCGTCGGCGACCCTAGAAAAGTCACCAGTAGATCAAATTTTCTCAAATTTTCACAGATGGTCGGAAATAACACCGAAATGATGCCCCATATTTCCGTTTGTCGAGATTTTGATTTTGAAGCCTTCTGGAGACATTCCTTGGTTTCAGCACACTGAAAGTGGTGGAACTTCCCCCCTAGGAAGAGTTGCCGAGGGGAAGAGAGGTGATGTGTTTACCTCTATTGTCGAATGGAACAAAAACTGGGACCTGAGAATTTCAGTAAAATCTAGTGATTTTTGAAATCAAAAATCAACAAAAAATCGACTTGCAAGAAAAACCTTTTTTCGCAATTTTATAACCCCGAAAAAAAACTTTTCCGGAGAACAAGGAACTTTTTTTGTTTGATGAGGGTATAAAAAGCCAGCGGYTCTAAACTTTTTCTTCAGTTTTGAAAACAGAAAATATGAAGCTTTCAATTCTAATATTTTTCTCTTTTCTCTGCCCGATTCTAGCGGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCGGAATCCCATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAGCACGTCCACGACCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGCTATTCAAACGATCTCAAGGCAATTGGTGTGTTAAGGTGAAAGAGACTTCAAACTACAGAAACTAAAAACGACGAACCTTCAGGTTTTTGTTGGTCGATTGAACCAACCCCAAGCCGAAGCACAATGTGTTGTTCAAGGAGCAGTGTTATCTGGATTGCAGACGGATGAGGAGAGGGTGAAAGTGGCAGGTTAGGGATTTTATAATCTGTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>499 313 88 78 22</canonical_bands>
                <polymorphic_bands>587 313 78 22</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>279 213 208 99 60 46 42 40 7 6</canonical_bands>
                <polymorphic_bands>279 213 208 99 60 49 46 40 6</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>499 313 88 78 22</canonical_bands>
                <polymorphic_bands>587 313 78 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTGGGACCTGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>GCAGAGAAAAGAGAAAAATATTAGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTGGGACCTGAGAATTTCAGTAAAATCTAGTGATTTTTGAAATCAAAAATCAACAAAAAATCGACTTGCAAGAAAAACCTTTTTTCGCAATTTTATAACCCCGAAAAAAAACTTTTCCGGAGAACAAGGAACTTTTTTTGTTTGATGAGGGTATAAAAAGCCAGCGGCTCTAAACTTTTTCTTCAGTTTTGAAAACAGAAAATATGAAGCTTTCAATTCTAATATTTTTCTCTTTTCTCTGC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTGGGACCTGAGAATTTCAGTAAAATCTAGTGATTTTTGAAATCAAAAATCAACAAAAAATCGACTTGCAAGAAAAACCTTTTTTCGCAATTTTATAACCCCGAAAAAAAACTTTTCCGGAGAACAAGGAACTTTTTTTGTTTGATGAGGGTATAAAAAGCCAGCGGYTCTAAACTTTTTCTTCAGTTTTGAAAACAGAAAATATGAAGCTTTCAATTCTAATATTTTTCTCTTTTCTCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb595</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>644815</contig_pos>
        <strand>+</strand>
        <context>CCAGCGGYTC[A/T]AAACTTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAACAAGGAACTTTTTTTGTTTGATGAGGGTATAAAAAGCCAGCGGCTC</left_flank>
        <right_flank>AAACTTTTTCTTCAGTTTTGAAAACAGAAAATATGAAGCTTTCAATTCTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGTGGGTGCGTGTGCCTGCGTGCGTGCGCGCGCGTGGGTGTGCCCGTTTGTTCCCGCGTCGGCGACCCTAGAAAAGTCACCAGTAGATCAAATTTTCTCAAATTTTCACAGATGGTCGGAAATAACACCGAAATGATGCCCCATATTTCCGTTTGTCGAGATTTTGATTTTGAAGCCTTCTGGAGACATTCCTTGGTTTCAGCACACTGAAAGTGGTGGAACTTCCCCCCTAGGAAGAGTTGCCGAGGGGAAGAGAGGTGATGTGTTTACCTCTATTGTCGAATGGAACAAAAACTGGGACCTGAGAATTTCAGTAAAATCTAGTGATTTTTGAAATCAAAAATCAACAAAAAATCGACTTGCAAGAAAAACCTTTTTTCGCAATTTTATAACCCCGAAAAAAAACTTTTCCGGAGAACAAGGAACTTTTTTTGTTTGATGAGGGTATAAAAAGCCAGCGGCTCTAAACTTTTTCTTCAGTTTTGAAAACAGAAAATATGAAGCTTTCAATTCTAATATTTTTCTCTTTTCTCTGCCCGATTCTAGCGGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCGGAATCCCATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAGCACGTCCACGACCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGCTATTCAAACGATCTCAAGGCAATTGGTGTGTTAAGGTGAAAGAGACTTCAAACTACAGAAACTAAAAACGACGAACCTTCAGGTTTTTGTTGGTCGATTGAACCAACCCCAAGCCGAAGCACAATGTGTTGTTCAAGGAGCAGTGTTATCTGGATTGCAGACGGATGAGGAGAGGGTGAAAGTGGCAGGTTAGGGATTTTATAATCTGTTTGTAG</canonical>
            <polymorphic>GATTTTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGTGGGTGCGTGTGCCTGCGTGCGTGCGCGCGCGTGGGTGTGCCCGTTTGTTCCCGCGTCGGCGACCCTAGAAAAGTCACCAGTAGATCAAATTTTCTCAAATTTTCACAGATGGTCGGAAATAACACCGAAATGATGCCCCATATTTCCGTTTGTCGAGATTTTGATTTTGAAGCCTTCTGGAGACATTCCTTGGTTTCAGCACACTGAAAGTGGTGGAACTTCCCCCCTAGGAAGAGTTGCCGAGGGGAAGAGAGGTGATGTGTTTACCTCTATTGTCGAATGGAACAAAAACTGGGACCTGAGAATTTCAGTAAAATCTAGTGATTTTTGAAATCAAAAATCAACAAAAAATCGACTTGCAAGAAAAACCTTTTTTCGCAATTTTATAACCCCGAAAAAAAACTTTTCCGGAGAACAAGGAACTTTTTTTGTTTGATGAGGGTATAAAAAGCCAGCGGCTCWAAACTTTTTCTTCAGTTTTGAAAACAGAAAATATGAAGCTTTCAATTCTAATATTTTTCTCTTTTCTCTGCCCGATTCTAGCGGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCGGAATCCCATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAGCACGTCCACGACCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGCTATTCAAACGATCTCAAGGCAATTGGTGTGTTAAGGTGAAAGAGACTTCAAACTACAGAAACTAAAAACGACGAACCTTCAGGTTTTTGTTGGTCGATTGAACCAACCCCAAGCCGAAGCACAATGTGTTGTTCAAGGAGCAGTGTTATCTGGATTGCAGACGGATGAGGAGAGGGTGAAAGTGGCAGGTTAGGGATTTTATAATCTGTTTGTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTGGGACCTGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>GCAGAGAAAAGAGAAAAATATTAGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTGGGACCTGAGAATTTCAGTAAAATCTAGTGATTTTTGAAATCAAAAATCAACAAAAAATCGACTTGCAAGAAAAACCTTTTTTCGCAATTTTATAACCCCGAAAAAAAACTTTTCCGGAGAACAAGGAACTTTTTTTGTTTGATGAGGGTATAAAAAGCCAGCGGCTCTAAACTTTTTCTTCAGTTTTGAAAACAGAAAATATGAAGCTTTCAATTCTAATATTTTTCTCTTTTCTCTGC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTGGGACCTGAGAATTTCAGTAAAATCTAGTGATTTTTGAAATCAAAAATCAACAAAAAATCGACTTGCAAGAAAAACCTTTTTTCGCAATTTTATAACCCCGAAAAAAAACTTTTCCGGAGAACAAGGAACTTTTTTTGTTTGATGAGGGTATAAAAAGCCAGCGGCTCWAAACTTTTTCTTCAGTTTTGAAAACAGAAAATATGAAGCTTTCAATTCTAATATTTTTCTCTTTTCTCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb596</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>644840</contig_pos>
        <strand>+</strand>
        <context>GTTTTGAAAA[A/C]AGAAAATATG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGAGGGTATAAAAAGCCAGCGGCTCTAAACTTTTTCTTCAGTTTTGAAAA</left_flank>
        <right_flank>AGAAAATATGAAGCTTTCAATTCTAATATTTTTCTCTTTTCTCTGCCCGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGCGCGCGCGTGGGTGCGTGTGCCTGCGTGCGTGCGCGCGCGTGGGTGTGCCCGTTTGTTCCCGCGTCGGCGACCCTAGAAAAGTCACCAGTAGATCAAATTTTCTCAAATTTTCACAGATGGTCGGAAATAACACCGAAATGATGCCCCATATTTCCGTTTGTCGAGATTTTGATTTTGAAGCCTTCTGGAGACATTCCTTGGTTTCAGCACACTGAAAGTGGTGGAACTTCCCCCCTAGGAAGAGTTGCCGAGGGGAAGAGAGGTGATGTGTTTACCTCTATTGTCGAATGGAACAAAAACTGGGACCTGAGAATTTCAGTAAAATCTAGTGATTTTTGAAATCAAAAATCAACAAAAAATCGACTTGCAAGAAAAACCTTTTTTCGCAATTTTATAACCCCGAAAAAAAACTTTTCCGGAGAACAAGGAACTTTTTTTGTTTGATGAGGGTATAAAAAGCCAGCGGCTCTAAACTTTTTCTTCAGTTTTGAAAACAGAAAATATGAAGCTTTCAATTCTAATATTTTTCTCTTTTCTCTGCCCGATTCTAGCGGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCGGAATCCCATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAGCACGTCCACGACCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGCTATTCAAACGATCTCAAGGCAATTGGTGTGTTAAGGTGAAAGAGACTTCAAACTACAGAAACTAAAAACGACGAACCTTCAGGTTTTTGTTGGTCGATTGAACCAACCCCAAGCCGAAGCACAATGTGTTGTTCAAGGAGCAGTGTTATCTGGATTGCAGACGGATGAGGAGAGGGTGAAAGTGGCAGGTTAGGGATTTTATAATCTGTTTGTAGTCTTACCCATATGGTACATGACAAT</canonical>
            <polymorphic>TGTGCGCGCGCGTGGGTGCGTGTGCCTGCGTGCGTGCGCGCGCGTGGGTGTGCCCGTTTGTTCCCGCGTCGGCGACCCTAGAAAAGTCACCAGTAGATCAAATTTTCTCAAATTTTCACAGATGGTCGGAAATAACACCGAAATGATGCCCCATATTTCCGTTTGTCGAGATTTTGATTTTGAAGCCTTCTGGAGACATTCCTTGGTTTCAGCACACTGAAAGTGGTGGAACTTCCCCCCTAGGAAGAGTTGCCGAGGGGAAGAGAGGTGATGTGTTTACCTCTATTGTCGAATGGAACAAAAACTGGGACCTGAGAATTTCAGTAAAATCTAGTGATTTTTGAAATCAAAAATCAACAAAAAATCGACTTGCAAGAAAAACCTTTTTTCGCAATTTTATAACCCCGAAAAAAAACTTTTCCGGAGAACAAGGAACTTTTTTTGTTTGATGAGGGTATAAAAAGCCAGCGGCTCTAAACTTTTTCTTCAGTTTTGAAAAMAGAAAATATGAAGCTTTCAATTCTAATATTTTTCTCTTTTCTCTGCCCGATTCTAGCGGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCGGAATCCCATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAGCACGTCCACGACCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGCTATTCAAACGATCTCAAGGCAATTGGTGTGTTAAGGTGAAAGAGACTTCAAACTACAGAAACTAAAAACGACGAACCTTCAGGTTTTTGTTGGTCGATTGAACCAACCCCAAGCCGAAGCACAATGTGTTGTTCAAGGAGCAGTGTTATCTGGATTGCAGACGGATGAGGAGAGGGTGAAAGTGGCAGGTTAGGGATTTTATAATCTGTTTGTAGTCTTACCCATATGGTACATGACAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCGACTTGCAAGAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CGAAGACCATGAAGAGCTAC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AAATCGACTTGCAAGAAAAACCTTTTTTCGCAATTTTATAACCCCGAAAAAAAACTTTTCCGGAGAACAAGGAACTTTTTTTGTTTGATGAGGGTATAAAAAGCCAGCGGCTCTAAACTTTTTCTTCAGTTTTGAAAACAGAAAATATGAAGCTTTCAATTCTAATATTTTTCTCTTTTCTCTGCCCGATTCTAGCGGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCG</canonical_amplicon>
		<polymorphic_amplicon>AAATCGACTTGCAAGAAAAACCTTTTTTCGCAATTTTATAACCCCGAAAAAAAACTTTTCCGGAGAACAAGGAACTTTTTTTGTTTGATGAGGGTATAAAAAGCCAGCGGCTCTAAACTTTTTCTTCAGTTTTGAAAAMAGAAAATATGAAGCTTTCAATTCTAATATTTTTCTCTTTTCTCTGCCCGATTCTAGCGGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb597</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>644934</contig_pos>
        <strand>+</strand>
        <context>AAGATAGCAG[C/T]AGTAGCTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCCCGATTCTAGCGGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAG</left_flank>
        <right_flank>AGTAGCTCTTCATGGTCTTCGGAATCCCATGAAGGTCGAGGGGGCGGACG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATCAAATTTTCTCAAATTTTCACAGATGGTCGGAAATAACACCGAAATGATGCCCCATATTTCCGTTTGTCGAGATTTTGATTTTGAAGCCTTCTGGAGACATTCCTTGGTTTCAGCACACTGAAAGTGGTGGAACTTCCCCCCTAGGAAGAGTTGCCGAGGGGAAGAGAGGTGATGTGTTTACCTCTATTGTCGAATGGAACAAAAACTGGGACCTGAGAATTTCAGTAAAATCTAGTGATTTTTGAAATCAAAAATCAACAAAAAATCGACTTGCAAGAAAAACCTTTTTTCGCAATTTTATAACCCCGAAAAAAAACTTTTCCGGAGAACAAGGAACTTTTTTTGTTTGATGAGGGTATAAAAAGCCAGCGGCTCTAAACTTTTTCTTCAGTTTTGAAAACAGAAAATATGAAGCTTTCAATTCTAATATTTTTCTCTTTTCTCTGCCCGATTCTAGCGGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCGGAATCCCATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAGCACGTCCACGACCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGCTATTCAAACGATCTCAAGGCAATTGGTGTGTTAAGGTGAAAGAGACTTCAAACTACAGAAACTAAAAACGACGAACCTTCAGGTTTTTGTTGGTCGATTGAACCAACCCCAAGCCGAAGCACAATGTGTTGTTCAAGGAGCAGTGTTATCTGGATTGCAGACGGATGAGGAGAGGGTGAAAGTGGCAGGTTAGGGATTTTATAATCTGTTTGTAGTCTTACCCATATGGTACATGACAATGAGCTATACAGCACTAAAAAGTAGCCATATGACGCCCATATAGTACATCTAGAACGTCGAATAGAGAGCTTTAGTGATCATATGGTACATAGCA</canonical>
            <polymorphic>AGATCAAATTTTCTCAAATTTTCACAGATGGTCGGAAATAACACCGAAATGATGCCCCATATTTCCGTTTGTCGAGATTTTGATTTTGAAGCCTTCTGGAGACATTCCTTGGTTTCAGCACACTGAAAGTGGTGGAACTTCCCCCCTAGGAAGAGTTGCCGAGGGGAAGAGAGGTGATGTGTTTACCTCTATTGTCGAATGGAACAAAAACTGGGACCTGAGAATTTCAGTAAAATCTAGTGATTTTTGAAATCAAAAATCAACAAAAAATCGACTTGCAAGAAAAACCTTTTTTCGCAATTTTATAACCCCGAAAAAAAACTTTTCCGGAGAACAAGGAACTTTTTTTGTTTGATGAGGGTATAAAAAGCCAGCGGCTCTAAACTTTTTCTTCAGTTTTGAAAACAGAAAATATGAAGCTTTCAATTCTAATATTTTTCTCTTTTCTCTGCCCGATTCTAGCGGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGYAGTAGCTCTTCATGGTCTTCGGAATCCCATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAGCACGTCCACGACCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGCTATTCAAACGATCTCAAGGCAATTGGTGTGTTAAGGTGAAAGAGACTTCAAACTACAGAAACTAAAAACGACGAACCTTCAGGTTTTTGTTGGTCGATTGAACCAACCCCAAGCCGAAGCACAATGTGTTGTTCAAGGAGCAGTGTTATCTGGATTGCAGACGGATGAGGAGAGGGTGAAAGTGGCAGGTTAGGGATTTTATAATCTGTTTGTAGTCTTACCCATATGGTACATGACAATGAGCTATACAGCACTAAAAAGTAGCCATATGACGCCCATATAGTACATCTAGAACGTCGAATAGAGAGCTTTAGTGATCATATGGTACATAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGCTTTCAATTCTAATATTTTT</pcr_primer_p1>
		<pcr_primer_p2>GCAGTTGGTCTTCTCTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TGAAGCTTTCAATTCTAATATTTTTCTCTTTTCTCTGCCCGATTCTAGCGGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCGGAATCCCATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAGCACGTCCACGACCGCCAAGAGAGAAGACCAACTGC</canonical_amplicon>
		<polymorphic_amplicon>TGAAGCTTTCAATTCTAATATTTTTCTCTTTTCTCTGCCCGATTCTAGCGGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGYAGTAGCTCTTCATGGTCTTCGGAATCCCATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAGCACGTCCACGACCGCCAAGAGAGAAGACCAACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb598</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>644961</contig_pos>
        <strand>+</strand>
        <context>CTTCGGAATC[A/C]CATGAAGGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCGGAATC</left_flank>
        <right_flank>CATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGTCGGAAATAACACCGAAATGATGCCCCATATTTCCGTTTGTCGAGATTTTGATTTTGAAGCCTTCTGGAGACATTCCTTGGTTTCAGCACACTGAAAGTGGTGGAACTTCCCCCCTAGGAAGAGTTGCCGAGGGGAAGAGAGGTGATGTGTTTACCTCTATTGTCGAATGGAACAAAAACTGGGACCTGAGAATTTCAGTAAAATCTAGTGATTTTTGAAATCAAAAATCAACAAAAAATCGACTTGCAAGAAAAACCTTTTTTCGCAATTTTATAACCCCGAAAAAAAACTTTTCCGGAGAACAAGGAACTTTTTTTGTTTGATGAGGGTATAAAAAGCCAGCGGCTCTAAACTTTTTCTTCAGTTTTGAAAACAGAAAATATGAAGCTTTCAATTCTAATATTTTTCTCTTTTCTCTGCCCGATTCTAGCGGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCGGAATCCCATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAGCACGTCCACGACCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGCTATTCAAACGATCTCAAGGCAATTGGTGTGTTAAGGTGAAAGAGACTTCAAACTACAGAAACTAAAAACGACGAACCTTCAGGTTTTTGTTGGTCGATTGAACCAACCCCAAGCCGAAGCACAATGTGTTGTTCAAGGAGCAGTGTTATCTGGATTGCAGACGGATGAGGAGAGGGTGAAAGTGGCAGGTTAGGGATTTTATAATCTGTTTGTAGTCTTACCCATATGGTACATGACAATGAGCTATACAGCACTAAAAAGTAGCCATATGACGCCCATATAGTACATCTAGAACGTCGAATAGAGAGCTTTAGTGATCATATGGTACATAGCAACGAACCATATGGTGCAAATCAATTAC</canonical>
            <polymorphic>ATGGTCGGAAATAACACCGAAATGATGCCCCATATTTCCGTTTGTCGAGATTTTGATTTTGAAGCCTTCTGGAGACATTCCTTGGTTTCAGCACACTGAAAGTGGTGGAACTTCCCCCCTAGGAAGAGTTGCCGAGGGGAAGAGAGGTGATGTGTTTACCTCTATTGTCGAATGGAACAAAAACTGGGACCTGAGAATTTCAGTAAAATCTAGTGATTTTTGAAATCAAAAATCAACAAAAAATCGACTTGCAAGAAAAACCTTTTTTCGCAATTTTATAACCCCGAAAAAAAACTTTTCCGGAGAACAAGGAACTTTTTTTGTTTGATGAGGGTATAAAAAGCCAGCGGCTCTAAACTTTTTCTTCAGTTTTGAAAACAGAAAATATGAAGCTTTCAATTCTAATATTTTTCTCTTTTCTCTGCCCGATTCTAGCGGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCGGAATCMCATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAGCACGTCCACGACCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGCTATTCAAACGATCTCAAGGCAATTGGTGTGTTAAGGTGAAAGAGACTTCAAACTACAGAAACTAAAAACGACGAACCTTCAGGTTTTTGTTGGTCGATTGAACCAACCCCAAGCCGAAGCACAATGTGTTGTTCAAGGAGCAGTGTTATCTGGATTGCAGACGGATGAGGAGAGGGTGAAAGTGGCAGGTTAGGGATTTTATAATCTGTTTGTAGTCTTACCCATATGGTACATGACAATGAGCTATACAGCACTAAAAAGTAGCCATATGACGCCCATATAGTACATCTAGAACGTCGAATAGAGAGCTTTAGTGATCATATGGTACATAGCAACGAACCATATGGTGCAAATCAATTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCCATTGGTGTCTATAATG</pcr_primer_p1>
		<pcr_primer_p2>TGAAGTCTCTTTCACCTTAACAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCGGAATCCCATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAGCACGTCCACGACCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGCTATTCAAACGATCTCAAGGCAATTGGTGTGTTAAGGTGAAAGAGACTTCA</canonical_amplicon>
		<polymorphic_amplicon>GGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCGGAATCMCATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAGCACGTCCACGACCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGCTATTCAAACGATCTCAAGGCAATTGGTGTGTTAAGGTGAAAGAGACTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb599</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>645033</contig_pos>
        <strand>+</strand>
        <context>GTCGACCACG[C/T]CCCCAACGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACG</left_flank>
        <right_flank>CCCCAACGACCACCAGCACGTCCACGACCGCCAAGAGAGAAGACCAACTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGACATTCCTTGGTTTCAGCACACTGAAAGTGGTGGAACTTCCCCCCTAGGAAGAGTTGCCGAGGGGAAGAGAGGTGATGTGTTTACCTCTATTGTCGAATGGAACAAAAACTGGGACCTGAGAATTTCAGTAAAATCTAGTGATTTTTGAAATCAAAAATCAACAAAAAATCGACTTGCAAGAAAAACCTTTTTTCGCAATTTTATAACCCCGAAAAAAAACTTTTCCGGAGAACAAGGAACTTTTTTTGTTTGATGAGGGTATAAAAAGCCAGCGGCTCTAAACTTTTTCTTCAGTTTTGAAAACAGAAAATATGAAGCTTTCAATTCTAATATTTTTCTCTTTTCTCTGCCCGATTCTAGCGGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCGGAATCCCATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAGCACGTCCACGACCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGCTATTCAAACGATCTCAAGGCAATTGGTGTGTTAAGGTGAAAGAGACTTCAAACTACAGAAACTAAAAACGACGAACCTTCAGGTTTTTGTTGGTCGATTGAACCAACCCCAAGCCGAAGCACAATGTGTTGTTCAAGGAGCAGTGTTATCTGGATTGCAGACGGATGAGGAGAGGGTGAAAGTGGCAGGTTAGGGATTTTATAATCTGTTTGTAGTCTTACCCATATGGTACATGACAATGAGCTATACAGCACTAAAAAGTAGCCATATGACGCCCATATAGTACATCTAGAACGTCGAATAGAGAGCTTTAGTGATCATATGGTACATAGCAACGAACCATATGGTGCAAATCAATTACCATTTTCTAGTCTTTGCAATTCCAATTTTTCCAGAAATGGCTACAAAATTGGTCCATCAAAATGGGTTCGAT</canonical>
            <polymorphic>AGACATTCCTTGGTTTCAGCACACTGAAAGTGGTGGAACTTCCCCCCTAGGAAGAGTTGCCGAGGGGAAGAGAGGTGATGTGTTTACCTCTATTGTCGAATGGAACAAAAACTGGGACCTGAGAATTTCAGTAAAATCTAGTGATTTTTGAAATCAAAAATCAACAAAAAATCGACTTGCAAGAAAAACCTTTTTTCGCAATTTTATAACCCCGAAAAAAAACTTTTCCGGAGAACAAGGAACTTTTTTTGTTTGATGAGGGTATAAAAAGCCAGCGGCTCTAAACTTTTTCTTCAGTTTTGAAAACAGAAAATATGAAGCTTTCAATTCTAATATTTTTCTCTTTTCTCTGCCCGATTCTAGCGGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCGGAATCCCATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACGYCCCCAACGACCACCAGCACGTCCACGACCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGCTATTCAAACGATCTCAAGGCAATTGGTGTGTTAAGGTGAAAGAGACTTCAAACTACAGAAACTAAAAACGACGAACCTTCAGGTTTTTGTTGGTCGATTGAACCAACCCCAAGCCGAAGCACAATGTGTTGTTCAAGGAGCAGTGTTATCTGGATTGCAGACGGATGAGGAGAGGGTGAAAGTGGCAGGTTAGGGATTTTATAATCTGTTTGTAGTCTTACCCATATGGTACATGACAATGAGCTATACAGCACTAAAAAGTAGCCATATGACGCCCATATAGTACATCTAGAACGTCGAATAGAGAGCTTTAGTGATCATATGGTACATAGCAACGAACCATATGGTGCAAATCAATTACCATTTTCTAGTCTTTGCAATTCCAATTTTTCCAGAAATGGCTACAAAATTGGTCCATCAAAATGGGTTCGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNGTC</site>
                <isoschizomers>
                    <enzyme>AspI</enzyme>
                    <enzyme>PflFI</enzyme>
                    <enzyme>PsyI</enzyme>
                    <enzyme>TelI</enzyme>
                    <enzyme>Tth111I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>497 343 139 21</canonical_bands>
                <polymorphic_bands>518 343 139</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCCATTGGTGTCTATAATG</pcr_primer_p1>
		<pcr_primer_p2>TGAAGTCTCTTTCACCTTAACAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCGGAATCCCATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAGCACGTCCACGACCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGCTATTCAAACGATCTCAAGGCAATTGGTGTGTTAAGGTGAAAGAGACTTCA</canonical_amplicon>
		<polymorphic_amplicon>GGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCGGAATCCCATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACGYCCCCAACGACCACCAGCACGTCCACGACCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGCTATTCAAACGATCTCAAGGCAATTGGTGTGTTAAGGTGAAAGAGACTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb600</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>645054</contig_pos>
        <strand>+</strand>
        <context>CACCAGYACG[C/T]CCACGMCCGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCCACGGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAGCACG</left_flank>
        <right_flank>CCACGACCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGCTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACTGAAAGTGGTGGAACTTCCCCCCTAGGAAGAGTTGCCGAGGGGAAGAGAGGTGATGTGTTTACCTCTATTGTCGAATGGAACAAAAACTGGGACCTGAGAATTTCAGTAAAATCTAGTGATTTTTGAAATCAAAAATCAACAAAAAATCGACTTGCAAGAAAAACCTTTTTTCGCAATTTTATAACCCCGAAAAAAAACTTTTCCGGAGAACAAGGAACTTTTTTTGTTTGATGAGGGTATAAAAAGCCAGCGGCTCTAAACTTTTTCTTCAGTTTTGAAAACAGAAAATATGAAGCTTTCAATTCTAATATTTTTCTCTTTTCTCTGCCCGATTCTAGCGGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCGGAATCCCATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAGCACGTCCACGACCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGCTATTCAAACGATCTCAAGGCAATTGGTGTGTTAAGGTGAAAGAGACTTCAAACTACAGAAACTAAAAACGACGAACCTTCAGGTTTTTGTTGGTCGATTGAACCAACCCCAAGCCGAAGCACAATGTGTTGTTCAAGGAGCAGTGTTATCTGGATTGCAGACGGATGAGGAGAGGGTGAAAGTGGCAGGTTAGGGATTTTATAATCTGTTTGTAGTCTTACCCATATGGTACATGACAATGAGCTATACAGCACTAAAAAGTAGCCATATGACGCCCATATAGTACATCTAGAACGTCGAATAGAGAGCTTTAGTGATCATATGGTACATAGCAACGAACCATATGGTGCAAATCAATTACCATTTTCTAGTCTTTGCAATTCCAATTTTTCCAGAAATGGCTACAAAATTGGTCCATCAAAATGGGTTCGATCAGGCATCTGTTTGGATTGGT</canonical>
            <polymorphic>CACTGAAAGTGGTGGAACTTCCCCCCTAGGAAGAGTTGCCGAGGGGAAGAGAGGTGATGTGTTTACCTCTATTGTCGAATGGAACAAAAACTGGGACCTGAGAATTTCAGTAAAATCTAGTGATTTTTGAAATCAAAAATCAACAAAAAATCGACTTGCAAGAAAAACCTTTTTTCGCAATTTTATAACCCCGAAAAAAAACTTTTCCGGAGAACAAGGAACTTTTTTTGTTTGATGAGGGTATAAAAAGCCAGCGGCTCTAAACTTTTTCTTCAGTTTTGAAAACAGAAAATATGAAGCTTTCAATTCTAATATTTTTCTCTTTTCTCTGCCCGATTCTAGCGGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCGGAATCCCATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAGCACGYCCACGACCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGCTATTCAAACGATCTCAAGGCAATTGGTGTGTTAAGGTGAAAGAGACTTCAAACTACAGAAACTAAAAACGACGAACCTTCAGGTTTTTGTTGGTCGATTGAACCAACCCCAAGCCGAAGCACAATGTGTTGTTCAAGGAGCAGTGTTATCTGGATTGCAGACGGATGAGGAGAGGGTGAAAGTGGCAGGTTAGGGATTTTATAATCTGTTTGTAGTCTTACCCATATGGTACATGACAATGAGCTATACAGCACTAAAAAGTAGCCATATGACGCCCATATAGTACATCTAGAACGTCGAATAGAGAGCTTTAGTGATCATATGGTACATAGCAACGAACCATATGGTGCAAATCAATTACCATTTTCTAGTCTTTGCAATTCCAATTTTTCCAGAAATGGCTACAAAATTGGTCCATCAAAATGGGTTCGATCAGGCATCTGTTTGGATTGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 408 63 30</canonical_bands>
                <polymorphic_bands>529 408 63</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>476 343 160 21</canonical_bands>
                <polymorphic_bands>476 364 160</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCCATTGGTGTCTATAATG</pcr_primer_p1>
		<pcr_primer_p2>TGAAGTCTCTTTCACCTTAACAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCGGAATCCCATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAGCACGTCCACGACCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGCTATTCAAACGATCTCAAGGCAATTGGTGTGTTAAGGTGAAAGAGACTTCA</canonical_amplicon>
		<polymorphic_amplicon>GGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCGGAATCCCATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAGCACGYCCACGACCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGCTATTCAAACGATCTCAAGGCAATTGGTGTGTTAAGGTGAAAGAGACTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb601</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>645060</contig_pos>
        <strand>+</strand>
        <context>YACGYCCACG[A/C]CCGCCAAGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAGCACGTCCACG</left_flank>
        <right_flank>CCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGCTATTCAAACG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTGGTGGAACTTCCCCCCTAGGAAGAGTTGCCGAGGGGAAGAGAGGTGATGTGTTTACCTCTATTGTCGAATGGAACAAAAACTGGGACCTGAGAATTTCAGTAAAATCTAGTGATTTTTGAAATCAAAAATCAACAAAAAATCGACTTGCAAGAAAAACCTTTTTTCGCAATTTTATAACCCCGAAAAAAAACTTTTCCGGAGAACAAGGAACTTTTTTTGTTTGATGAGGGTATAAAAAGCCAGCGGCTCTAAACTTTTTCTTCAGTTTTGAAAACAGAAAATATGAAGCTTTCAATTCTAATATTTTTCTCTTTTCTCTGCCCGATTCTAGCGGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCGGAATCCCATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAGCACGTCCACGACCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGCTATTCAAACGATCTCAAGGCAATTGGTGTGTTAAGGTGAAAGAGACTTCAAACTACAGAAACTAAAAACGACGAACCTTCAGGTTTTTGTTGGTCGATTGAACCAACCCCAAGCCGAAGCACAATGTGTTGTTCAAGGAGCAGTGTTATCTGGATTGCAGACGGATGAGGAGAGGGTGAAAGTGGCAGGTTAGGGATTTTATAATCTGTTTGTAGTCTTACCCATATGGTACATGACAATGAGCTATACAGCACTAAAAAGTAGCCATATGACGCCCATATAGTACATCTAGAACGTCGAATAGAGAGCTTTAGTGATCATATGGTACATAGCAACGAACCATATGGTGCAAATCAATTACCATTTTCTAGTCTTTGCAATTCCAATTTTTCCAGAAATGGCTACAAAATTGGTCCATCAAAATGGGTTCGATCAGGCATCTGTTTGGATTGGTGCCAAA</canonical>
            <polymorphic>AAGTGGTGGAACTTCCCCCCTAGGAAGAGTTGCCGAGGGGAAGAGAGGTGATGTGTTTACCTCTATTGTCGAATGGAACAAAAACTGGGACCTGAGAATTTCAGTAAAATCTAGTGATTTTTGAAATCAAAAATCAACAAAAAATCGACTTGCAAGAAAAACCTTTTTTCGCAATTTTATAACCCCGAAAAAAAACTTTTCCGGAGAACAAGGAACTTTTTTTGTTTGATGAGGGTATAAAAAGCCAGCGGCTCTAAACTTTTTCTTCAGTTTTGAAAACAGAAAATATGAAGCTTTCAATTCTAATATTTTTCTCTTTTCTCTGCCCGATTCTAGCGGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCGGAATCCCATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAGCACGTCCACGMCCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGCTATTCAAACGATCTCAAGGCAATTGGTGTGTTAAGGTGAAAGAGACTTCAAACTACAGAAACTAAAAACGACGAACCTTCAGGTTTTTGTTGGTCGATTGAACCAACCCCAAGCCGAAGCACAATGTGTTGTTCAAGGAGCAGTGTTATCTGGATTGCAGACGGATGAGGAGAGGGTGAAAGTGGCAGGTTAGGGATTTTATAATCTGTTTGTAGTCTTACCCATATGGTACATGACAATGAGCTATACAGCACTAAAAAGTAGCCATATGACGCCCATATAGTACATCTAGAACGTCGAATAGAGAGCTTTAGTGATCATATGGTACATAGCAACGAACCATATGGTGCAAATCAATTACCATTTTCTAGTCTTTGCAATTCCAATTTTTCCAGAAATGGCTACAAAATTGGTCCATCAAAATGGGTTCGATCAGGCATCTGTTTGGATTGGTGCCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCCATTGGTGTCTATAATG</pcr_primer_p1>
		<pcr_primer_p2>TGAAGTCTCTTTCACCTTAACAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCGGAATCCCATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAGCACGTCCACGACCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGCTATTCAAACGATCTCAAGGCAATTGGTGTGTTAAGGTGAAAGAGACTTCA</canonical_amplicon>
		<polymorphic_amplicon>GGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCGGAATCCCATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAGCACGTCCACGMCCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGCTATTCAAACGATCTCAAGGCAATTGGTGTGTTAAGGTGAAAGAGACTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb607</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>649291</contig_pos>
        <strand></strand>
        <context>TTATTACTGC[T/A]GACTACAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AACCTTTTAGTTTAAAGCCACATAATTCATCCCTTATAGCTTATTACTGC</left_flank>
        <right_flank>GACTACAAACTACAAACTATAAAGACTACAAACTACAAACTATAAAGACT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCTCTGGAATCCTTCTGGCTCATGGTGGCGGCTCAAAAAATCCAACGAGTCTATTTTCTAACCGGATCCGATTCCTCCGATTCCGCAGAACTCGACAAATCGGCATTTGCCACGTATTTCCCGGAAGATTTCACCGAATTCAAAACGATTCGTGTCAATAATCGAAAAACGATTCAAAAATCTGAGGAGCAGCCGAATTCTCAGCTATACTATGAGGTTGTACCGAAGGATTGTGCCGAGGCTCCGTTCTGTATGATTGAGATTTGTGATTTTTGGCCAGATGCCAAGATTCCAGCCATCTTACAGTCGGTTAGAATCGCTGGGACAGCTGCAAGCGTTTTTGAGACTGATATTGTGAGTTTGAAGCCTACAAAAACTACAAATACTACAAACTACAAACTACGCACGACAAATGCTACAAGGTTTAAACATTAACCTCCCAGGTTAAACCTTTTAGTTTAAAGCCACATAATTCATCCCTTATAGCTTATTACTGCTGACTACAAACTACAAACTATAAAGACTACAAACTACAAACTATAAAGACTACAAACTACAAAAACTACAAAAACTAAGAAGCCTACAAAAATTACAAACTAAAAGGTTTAAACATTAACCTTCAAGGTTAAGCGTTTAACCTTCAGTTACTGAACCCATATCTTATAGCTTATGGCTTACGACTACAAACCACAAAGACTACAAACTACAAACTACAATGATTTTCAGGATGCCGATGCGTCGTGTGCAATTATGAGCAATTACGGTGCCGGTAGACCAGGATCGTTTCTGGTTGGAGCATTGGCAATTGAGAAGCTGAGAAATGGAGATGTGCCAAACATTAAGGTGATTTATTTTGGTTCTTGGTAAAGGTAGAAAAAATAATTAATTAGGAAAATGTAGGAAATTTTATTTTACACATTTCTCTAGTTAGCAACTTTTTGATATCTTTTTTGGGAATCGAGATAATTAGCTTGGAAGTTAATTGCCTAAAAAGTTAT</canonical>
            <polymorphic>AATCTCTGGAATCCTTCTGGCTCATGGTGGCGGCTCAAAAAATCCAACGAGTCTATTTTCTAACCGGATCCGATTCCTCCGATTCCGCAGAACTCGACAAATCGGCATTTGCCACGTATTTCCCGGAAGATTTCACCGAATTCAAAACGATTCGTGTCAATAATCGAAAAACGATTCAAAAATCTGAGGAGCAGCCGAATTCTCAGCTATACTATGAGGTTGTACCGAAGGATTGTGCCGAGGCTCCGTTCTGTATGATTGAGATTTGTGATTTTTGGCCAGATGCCAAGATTCCAGCCATCTTACAGTCGGTTAGAATCGCTGGGACAGCTGCAAGCGTTTTTGAGACTGATATTGTGAGTTTGAAGCCTACAAAAACTACAAATACTACAAACTACAAACTACGCACGACAAATGCTACAAGGTTTAAACATTAACCTCCCAGGTTAAACCTTTTAGTTTAAAGCCACATAATTCATCCCTTATAGCTTATTACTGCWGACTACAAACTACAAACTATAAAGACTACAAACTACAAACTATAAAGACTACAAACTACAAAAACTACAAAAACTAAGAAGCCTACAAAAATTACAAACTAAAAGGTTTAAACATTAACCTTCAAGGTTAAGCGTTTAACCTTCAGTTACTGAACCCATATCTTATAGCTTATGGCTTACGACTACAAACCACAAAGACTACAAACTACAAACTACAATGATTTTCAGGATGCCGATGCGTCGTGTGCAATTATGAGCAATTACGGTGCCGGTAGACCAGGATCGTTTCTGGTTGGAGCATTGGCAATTGAGAAGCTGAGAAATGGAGATGTGCCAAACATTAAGGTGATTTATTTTGGTTCTTGGTAAAGGTAGAAAAAATAATTAATTAGGAAAATGTAGGAAATTTTATTTTACACATTTCTCTAGTTAGCAACTTTTTGATATCTTTTTTGGGAATCGAGATAATTAGCTTGGAAGTTAATTGCCTAAAAAGTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGACTGATATTGTGAGTTTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTAGGCTTCTTAGTTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTGAGACTGATATTGTGAGTTTGAAGCCTACAAAAACTACAAATACTACAAACTACAAACTACGCACGACAAATGCTACAAGGTTTAAACATTAACCTCCCAGGTTAAACCTTTTAGTTTAAAGCCACATAATTCATCCCTTATAGCTTATTACTGCTGACTACAAACTACAAACTATAAAGACTACAAACTACAAACTATAAAGACTACAAACTACAAAAACTACAAAAACTAAGAAGCCTACAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTGAGACTGATATTGTGAGTTTGAAGCCTACAAAAACTACAAATACTACAAACTACAAACTACGCACGACAAATGCTACAAGGTTTAAACATTAACCTCCCAGGTTAAACCTTTTAGTTTAAAGCCACATAATTCATCCCTTATAGCTTATTACTGCWGACTACAAACTACAAACTATAAAGACTACAAACTACAAACTATAAAGACTACAAACTACAAAAACTACAAAAACTAAGAAGCCTACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb608</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>649232</contig_pos>
        <strand></strand>
        <context>ACATTAACCT[C/T]CCAGGTTAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAACTACAAACTACGCACGACAAATGCTACAAGGTTTAAACATTAACCT</left_flank>
        <right_flank>CCAGGTTAAACCTTTTAGTTTAAAGCCACATAATTCATCCCTTATAGCTT</right_flank>
        <qual_score>35</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTCAGATCACCACCAAAACCACCATCCTTGCTCAACTCGCCGATTTGGACTCTCCCCAATCTCTGGAATCCTTCTGGCTCATGGTGGCGGCTCAAAAAATCCAACGAGTCTATTTTCTAACCGGATCCGATTCCTCCGATTCCGCAGAACTCGACAAATCGGCATTTGCCACGTATTTCCCGGAAGATTTCACCGAATTCAAAACGATTCGTGTCAATAATCGAAAAACGATTCAAAAATCTGAGGAGCAGCCGAATTCTCAGCTATACTATGAGGTTGTACCGAAGGATTGTGCCGAGGCTCCGTTCTGTATGATTGAGATTTGTGATTTTTGGCCAGATGCCAAGATTCCAGCCATCTTACAGTCGGTTAGAATCGCTGGGACAGCTGCAAGCGTTTTTGAGACTGATATTGTGAGTTTGAAGCCTACAAAAACTACAAATACTACAAACTACAAACTACGCACGACAAATGCTACAAGGTTTAAACATTAACCTCCCAGGTTAAACCTTTTAGTTTAAAGCCACATAATTCATCCCTTATAGCTTATTACTGCTGACTACAAACTACAAACTATAAAGACTACAAACTACAAACTATAAAGACTACAAACTACAAAAACTACAAAAACTAAGAAGCCTACAAAAATTACAAACTAAAAGGTTTAAACATTAACCTTCAAGGTTAAGCGTTTAACCTTCAGTTACTGAACCCATATCTTATAGCTTATGGCTTACGACTACAAACCACAAAGACTACAAACTACAAACTACAATGATTTTCAGGATGCCGATGCGTCGTGTGCAATTATGAGCAATTACGGTGCCGGTAGACCAGGATCGTTTCTGGTTGGAGCATTGGCAATTGAGAAGCTGAGAAATGGAGATGTGCCAAACATTAAGGTGATTTATTTTGGTTCTTGGTAAAGGTAGAAAAAATAATTAATTAGGAAAATGTAGGAAATTTTATTTTACACATTTCTCTAGTTAGCAACTTTT</canonical>
            <polymorphic>CCTTCAGATCACCACCAAAACCACCATCCTTGCTCAACTCGCCGATTTGGACTCTCCCCAATCTCTGGAATCCTTCTGGCTCATGGTGGCGGCTCAAAAAATCCAACGAGTCTATTTTCTAACCGGATCCGATTCCTCCGATTCCGCAGAACTCGACAAATCGGCATTTGCCACGTATTTCCCGGAAGATTTCACCGAATTCAAAACGATTCGTGTCAATAATCGAAAAACGATTCAAAAATCTGAGGAGCAGCCGAATTCTCAGCTATACTATGAGGTTGTACCGAAGGATTGTGCCGAGGCTCCGTTCTGTATGATTGAGATTTGTGATTTTTGGCCAGATGCCAAGATTCCAGCCATCTTACAGTCGGTTAGAATCGCTGGGACAGCTGCAAGCGTTTTTGAGACTGATATTGTGAGTTTGAAGCCTACAAAAACTACAAATACTACAAACTACAAACTACGCACGACAAATGCTACAAGGTTTAAACATTAACCTYCCAGGTTAAACCTTTTAGTTTAAAGCCACATAATTCATCCCTTATAGCTTATTACTGCTGACTACAAACTACAAACTATAAAGACTACAAACTACAAACTATAAAGACTACAAACTACAAAAACTACAAAAACTAAGAAGCCTACAAAAATTACAAACTAAAAGGTTTAAACATTAACCTTCAAGGTTAAGCGTTTAACCTTCAGTTACTGAACCCATATCTTATAGCTTATGGCTTACGACTACAAACCACAAAGACTACAAACTACAAACTACAATGATTTTCAGGATGCCGATGCGTCGTGTGCAATTATGAGCAATTACGGTGCCGGTAGACCAGGATCGTTTCTGGTTGGAGCATTGGCAATTGAGAAGCTGAGAAATGGAGATGTGCCAAACATTAAGGTGATTTATTTTGGTTCTTGGTAAAGGTAGAAAAAATAATTAATTAGGAAAATGTAGGAAATTTTATTTTACACATTTCTCTAGTTAGCAACTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>500 297 203</canonical_bands>
                <polymorphic_bands>703 297</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAGACTGATATTGTGAGTTTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTAGGCTTCTTAGTTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTGAGACTGATATTGTGAGTTTGAAGCCTACAAAAACTACAAATACTACAAACTACAAACTACGCACGACAAATGCTACAAGGTTTAAACATTAACCTCCCAGGTTAAACCTTTTAGTTTAAAGCCACATAATTCATCCCTTATAGCTTATTACTGCTGACTACAAACTACAAACTATAAAGACTACAAACTACAAACTATAAAGACTACAAACTACAAAAACTACAAAAACTAAGAAGCCTACAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTGAGACTGATATTGTGAGTTTGAAGCCTACAAAAACTACAAATACTACAAACTACAAACTACGCACGACAAATGCTACAAGGTTTAAACATTAACCTYCCAGGTTAAACCTTTTAGTTTAAAGCCACATAATTCATCCCTTATAGCTTATTACTGCTGACTACAAACTACAAACTATAAAGACTACAAACTACAAACTATAAAGACTACAAACTACAAAAACTACAAAAACTAAGAAGCCTACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb609</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>649177</contig_pos>
        <strand></strand>
        <context>AAACTACAAA[T/A]ACTACAAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGCGTTTTTGAGACTGATATTGTGAGTTTGAAGCCTACAAAAACTACAAA</left_flank>
        <right_flank>ACTACAAACTACAAACTACGCACGACAAATGCTACAAGGTTTAAACATTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAGGCTCACCCTTGGCAATGTGGGGGCCCTTCAATTACAGGTATTGTTGAAATCCTTCAGATCACCACCAAAACCACCATCCTTGCTCAACTCGCCGATTTGGACTCTCCCCAATCTCTGGAATCCTTCTGGCTCATGGTGGCGGCTCAAAAAATCCAACGAGTCTATTTTCTAACCGGATCCGATTCCTCCGATTCCGCAGAACTCGACAAATCGGCATTTGCCACGTATTTCCCGGAAGATTTCACCGAATTCAAAACGATTCGTGTCAATAATCGAAAAACGATTCAAAAATCTGAGGAGCAGCCGAATTCTCAGCTATACTATGAGGTTGTACCGAAGGATTGTGCCGAGGCTCCGTTCTGTATGATTGAGATTTGTGATTTTTGGCCAGATGCCAAGATTCCAGCCATCTTACAGTCGGTTAGAATCGCTGGGACAGCTGCAAGCGTTTTTGAGACTGATATTGTGAGTTTGAAGCCTACAAAAACTACAAATACTACAAACTACAAACTACGCACGACAAATGCTACAAGGTTTAAACATTAACCTCCCAGGTTAAACCTTTTAGTTTAAAGCCACATAATTCATCCCTTATAGCTTATTACTGCTGACTACAAACTACAAACTATAAAGACTACAAACTACAAACTATAAAGACTACAAACTACAAAAACTACAAAAACTAAGAAGCCTACAAAAATTACAAACTAAAAGGTTTAAACATTAACCTTCAAGGTTAAGCGTTTAACCTTCAGTTACTGAACCCATATCTTATAGCTTATGGCTTACGACTACAAACCACAAAGACTACAAACTACAAACTACAATGATTTTCAGGATGCCGATGCGTCGTGTGCAATTATGAGCAATTACGGTGCCGGTAGACCAGGATCGTTTCTGGTTGGAGCATTGGCAATTGAGAAGCTGAGAAATGGAGATGTGCCAAACATTAAGGTGATTTATTTTGGTTCTTGGTAAAGGTAGAAAAAATAATT</canonical>
            <polymorphic>ATTAGGCTCACCCTTGGCAATGTGGGGGCCCTTCAATTACAGGTATTGTTGAAATCCTTCAGATCACCACCAAAACCACCATCCTTGCTCAACTCGCCGATTTGGACTCTCCCCAATCTCTGGAATCCTTCTGGCTCATGGTGGCGGCTCAAAAAATCCAACGAGTCTATTTTCTAACCGGATCCGATTCCTCCGATTCCGCAGAACTCGACAAATCGGCATTTGCCACGTATTTCCCGGAAGATTTCACCGAATTCAAAACGATTCGTGTCAATAATCGAAAAACGATTCAAAAATCTGAGGAGCAGCCGAATTCTCAGCTATACTATGAGGTTGTACCGAAGGATTGTGCCGAGGCTCCGTTCTGTATGATTGAGATTTGTGATTTTTGGCCAGATGCCAAGATTCCAGCCATCTTACAGTCGGTTAGAATCGCTGGGACAGCTGCAAGCGTTTTTGAGACTGATATTGTGAGTTTGAAGCCTACAAAAACTACAAAWACTACAAACTACAAACTACGCACGACAAATGCTACAAGGTTTAAACATTAACCTCCCAGGTTAAACCTTTTAGTTTAAAGCCACATAATTCATCCCTTATAGCTTATTACTGCTGACTACAAACTACAAACTATAAAGACTACAAACTACAAACTATAAAGACTACAAACTACAAAAACTACAAAAACTAAGAAGCCTACAAAAATTACAAACTAAAAGGTTTAAACATTAACCTTCAAGGTTAAGCGTTTAACCTTCAGTTACTGAACCCATATCTTATAGCTTATGGCTTACGACTACAAACCACAAAGACTACAAACTACAAACTACAATGATTTTCAGGATGCCGATGCGTCGTGTGCAATTATGAGCAATTACGGTGCCGGTAGACCAGGATCGTTTCTGGTTGGAGCATTGGCAATTGAGAAGCTGAGAAATGGAGATGTGCCAAACATTAAGGTGATTTATTTTGGTTCTTGGTAAAGGTAGAAAAAATAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTGTATGATTGAGATTTGTGA</pcr_primer_p1>
		<pcr_primer_p2>GCAGTAATAAGCTATAAGGGATGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCTGTATGATTGAGATTTGTGATTTTTGGCCAGATGCCAAGATTCCAGCCATCTTACAGTCGGTTAGAATCGCTGGGACAGCTGCAAGCGTTTTTGAGACTGATATTGTGAGTTTGAAGCCTACAAAAACTACAAATACTACAAACTACAAACTACGCACGACAAATGCTACAAGGTTTAAACATTAACCTCCCAGGTTAAACCTTTTAGTTTAAAGCCACATAATTCATCCCTTATAGCTTATTACTGC</canonical_amplicon>
		<polymorphic_amplicon>TTCTGTATGATTGAGATTTGTGATTTTTGGCCAGATGCCAAGATTCCAGCCATCTTACAGTCGGTTAGAATCGCTGGGACAGCTGCAAGCGTTTTTGAGACTGATATTGTGAGTTTGAAGCCTACAAAAACTACAAAWACTACAAACTACAAACTACGCACGACAAATGCTACAAGGTTTAAACATTAACCTCCCAGGTTAAACCTTTTAGTTTAAAGCCACATAATTCATCCCTTATAGCTTATTACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb620</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>892622</contig_pos>
        <strand></strand>
        <context>ATCGCTCGTT[G/C]GCCGGACGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GGCAGTGAACAATTGAGCCGCGCCTTCAAATAGCTGGTCCATCGCTCGTT</left_flank>
        <right_flank>GCCGGACGGGCGCCCCCTTTATCGTTCTTGCACACCCTGGCGACACGGGC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTTTCAATTTTCGACTTTTTCGAAAATTTTCTCGATTATTCTCATTTTCAGCCCAACTCAGCTCGTGATATCGATTTTTATCGCAATTGGACGGTTTTGAAAATTTTTTCCAAATTTTTTTCGAATTTTCGCACAAATTTTGCTGCAATAAAAAATGTAAAACTCAATAATCACCTGATGCTTGAAAGTGCCATTATCGAATTCCTCTCGAATCTTCTTCATTGAAAACTTGCACACCGCACTCATTCGGACGTCAGAGTCCGGCGTGGAGAAGACCGTGTAGACGACGTGATCGTTGTTTCCAGCGTCGATGGGGTCCGAGACGGCTTCTGGAAGATTTTAGAAGGCGTTTGAGGTTTTAGATATATTTTAGAAGGAATAAATCGTTTCAGAAGATCCCGAAAACTCACTAAGCTCATTAAAATAGAACGGAGACGATCCAGAAGGCAGTGAACAATTGAGCCGCGCCTTCAAATAGCTGGTCCATCGCTCGTTGGCCGGACGGGCGCCCCCTTTATCGTTCTTGCACACCCTGGCGACACGGGCATAGATCTGAAAGGGTCTCAATTGGTGGTTAGAGGGTCTCCGAGGGTCACTAGGTGCTTACCTGTGACTCCTCATTATTATCGATTGCCTCGCTGGCGATCTCTCGGAACCAAAAGTAGACGTGCTCTTTGTAGGCAAAGGTGGCGACGAAGTTGGGAGCTGAAATTGTAGACATTGTCAGAAAATTCAGAAAATTTTTTTTTAATCGGAAGGTCCCATACCGTAATCTAAAAAAATATTTCGAATTTTTTGAATTTTCCGAATTTTTTTCTTGACTAAAAATCTCTGAAAATCGAGATAATGAATCGAAAAAAAAAATAAAATTATTGAATAATTAATAAATTACATCCCTCTGTCCTAATGCCTGCAGGGGACGGTACCTCCCTTCTATTTGCTAAGTGCCTTTTCCACATGACGTAATCACTAATTACCCGCAATCAGTCTTCAATC</canonical>
            <polymorphic>AAATTTTTCAATTTTCGACTTTTTCGAAAATTTTCTCGATTATTCTCATTTTCAGCCCAACTCAGCTCGTGATATCGATTTTTATCGCAATTGGACGGTTTTGAAAATTTTTTCCAAATTTTTTTCGAATTTTCGCACAAATTTTGCTGCAATAAAAAATGTAAAACTCAATAATCACCTGATGCTTGAAAGTGCCATTATCGAATTCCTCTCGAATCTTCTTCATTGAAAACTTGCACACCGCACTCATTCGGACGTCAGAGTCCGGCGTGGAGAAGACCGTGTAGACGACGTGATCGTTGTTTCCAGCGTCGATGGGGTCCGAGACGGCTTCTGGAAGATTTTAGAAGGCGTTTGAGGTTTTAGATATATTTTAGAAGGAATAAATCGTTTCAGAAGATCCCGAAAACTCACTAAGCTCATTAAAATAGAACGGAGACGATCCAGAAGGCAGTGAACAATTGAGCCGCGCCTTCAAATAGCTGGTCCATCGCTCGTTSGCCGGACGGGCGCCCCCTTTATCGTTCTTGCACACCCTGGCGACACGGGCATAGATCTGAAAGGGTCTCAATTGGTGGTTAGAGGGTCTCCGAGGGTCACTAGGTGCTTACCTGTGACTCCTCATTATTATCGATTGCCTCGCTGGCGATCTCTCGGAACCAAAAGTAGACGTGCTCTTTGTAGGCAAAGGTGGCGACGAAGTTGGGAGCTGAAATTGTAGACATTGTCAGAAAATTCAGAAAATTTTTTTTTAATCGGAAGGTCCCATACCGTAATCTAAAAAAATATTTCGAATTTTTTGAATTTTCCGAATTTTTTTCTTGACTAAAAATCTCTGAAAATCGAGATAATGAATCGAAAAAAAAAATAAAATTATTGAATAATTAATAAATTACATCCCTCTGTCCTAATGCCTGCAGGGGACGGTACCTCCCTTCTATTTGCTAAGTGCCTTTTCCACATGACGTAATCACTAATTACCCGCAATCAGTCTTCAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>291 265 208 88 55 48 19 16 10</canonical_bands>
                <polymorphic_bands>291 265 227 88 55 48 16 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATAAATCGTTTCAGAAGATCC</pcr_primer_p1>
		<pcr_primer_p2>AATAATGAGGAGTCACAGGTAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAATAAATCGTTTCAGAAGATCCCGAAAACTCACTAAGCTCATTAAAATAGAACGGAGACGATCCAGAAGGCAGTGAACAATTGAGCCGCGCCTTCAAATAGCTGGTCCATCGCTCGTTGGCCGGACGGGCGCCCCCTTTATCGTTCTTGCACACCCTGGCGACACGGGCATAGATCTGAAAGGGTCTCAATTGGTGGTTAGAGGGTCTCCGAGGGTCACTAGGTGCTTACCTGTGACTCCTCATTATT</canonical_amplicon>
		<polymorphic_amplicon>GAATAAATCGTTTCAGAAGATCCCGAAAACTCACTAAGCTCATTAAAATAGAACGGAGACGATCCAGAAGGCAGTGAACAATTGAGCCGCGCCTTCAAATAGCTGGTCCATCGCTCGTTSGCCGGACGGGCGCCCCCTTTATCGTTCTTGCACACCCTGGCGACACGGGCATAGATCTGAAAGGGTCTCAATTGGTGGTTAGAGGGTCTCCGAGGGTCACTAGGTGCTTACCTGTGACTCCTCATTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb621</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>892830</contig_pos>
        <strand></strand>
        <context>CGAAGTTGGG[A/T]GCTGAAATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACCAAAAGTAGACGTGCTCTTTGTAGGCAAAGGTGGCGACGAAGTTGGG</left_flank>
        <right_flank>GCTGAAATTGTAGACATTGTCAGAAAATTCAGAAAATTTTTTTTTAATCG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTCGAATCTTCTTCATTGAAAACTTGCACACCGCACTCATTCGGACGTCAGAGTCCGGCGTGGAGAAGACCGTGTAGACGACGTGATCGTTGTTTCCAGCGTCGATGGGGTCCGAGACGGCTTCTGGAAGATTTTAGAAGGCGTTTGAGGTTTTAGATATATTTTAGAAGGAATAAATCGTTTCAGAAGATCCCGAAAACTCACTAAGCTCATTAAAATAGAACGGAGACGATCCAGAAGGCAGTGAACAATTGAGCCGCGCCTTCAAATAGCTGGTCCATCGCTCGTTGGCCGGACGGGCGCCCCCTTTATCGTTCTTGCACACCCTGGCGACACGGGCATAGATCTGAAAGGGTCTCAATTGGTGGTTAGAGGGTCTCCGAGGGTCACTAGGTGCTTACCTGTGACTCCTCATTATTATCGATTGCCTCGCTGGCGATCTCTCGGAACCAAAAGTAGACGTGCTCTTTGTAGGCAAAGGTGGCGACGAAGTTGGGAGCTGAAATTGTAGACATTGTCAGAAAATTCAGAAAATTTTTTTTTAATCGGAAGGTCCCATACCGTAATCTAAAAAAATATTTCGAATTTTTTGAATTTTCCGAATTTTTTTCTTGACTAAAAATCTCTGAAAATCGAGATAATGAATCGAAAAAAAAAATAAAATTATTGAATAATTAATAAATTACATCCCTCTGTCCTAATGCCTGCAGGGGACGGTACCTCCCTTCTATTTGCTAAGTGCCTTTTCCACATGACGTAATCACTAATTACCCGCAATCAGTCTTCAATCACTTACCATTCAACACTCTCGCATCGTAACTTTGCGTTCGAATGTTCGCTGACGCTTTTGTTGCCGGTGTTTCGTCGATTGTCTTCCTGTAATTAGTTAATGGGGGTACTGTACTTGAGAATTTTGGTGGAGAGAATGCAAATTCATTAAAATGTATTTACTAATTGAGGTGCAAAGTACATAGGCAGTTTGAAAAAAAATTCCAGAA</canonical>
            <polymorphic>CTCTCGAATCTTCTTCATTGAAAACTTGCACACCGCACTCATTCGGACGTCAGAGTCCGGCGTGGAGAAGACCGTGTAGACGACGTGATCGTTGTTTCCAGCGTCGATGGGGTCCGAGACGGCTTCTGGAAGATTTTAGAAGGCGTTTGAGGTTTTAGATATATTTTAGAAGGAATAAATCGTTTCAGAAGATCCCGAAAACTCACTAAGCTCATTAAAATAGAACGGAGACGATCCAGAAGGCAGTGAACAATTGAGCCGCGCCTTCAAATAGCTGGTCCATCGCTCGTTGGCCGGACGGGCGCCCCCTTTATCGTTCTTGCACACCCTGGCGACACGGGCATAGATCTGAAAGGGTCTCAATTGGTGGTTAGAGGGTCTCCGAGGGTCACTAGGTGCTTACCTGTGACTCCTCATTATTATCGATTGCCTCGCTGGCGATCTCTCGGAACCAAAAGTAGACGTGCTCTTTGTAGGCAAAGGTGGCGACGAAGTTGGGWGCTGAAATTGTAGACATTGTCAGAAAATTCAGAAAATTTTTTTTTAATCGGAAGGTCCCATACCGTAATCTAAAAAAATATTTCGAATTTTTTGAATTTTCCGAATTTTTTTCTTGACTAAAAATCTCTGAAAATCGAGATAATGAATCGAAAAAAAAAATAAAATTATTGAATAATTAATAAATTACATCCCTCTGTCCTAATGCCTGCAGGGGACGGTACCTCCCTTCTATTTGCTAAGTGCCTTTTCCACATGACGTAATCACTAATTACCCGCAATCAGTCTTCAATCACTTACCATTCAACACTCTCGCATCGTAACTTTGCGTTCGAATGTTCGCTGACGCTTTTGTTGCCGGTGTTTCGTCGATTGTCTTCCTGTAATTAGTTAATGGGGGTACTGTACTTGAGAATTTTGGTGGAGAGAATGCAAATTCATTAAAATGTATTTACTAATTGAGGTGCAAAGTACATAGGCAGTTTGAAAAAAAATTCCAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>499 227 210 64</canonical_bands>
                <polymorphic_bands>726 210 64</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>499 208 122 88 48 19 16</canonical_bands>
                <polymorphic_bands>707 122 88 48 19 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTACCTGTGACTCCTCATTATT</pcr_primer_p1>
		<pcr_primer_p2>GATTCATTATCTCGATTTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTTACCTGTGACTCCTCATTATTATCGATTGCCTCGCTGGCGATCTCTCGGAACCAAAAGTAGACGTGCTCTTTGTAGGCAAAGGTGGCGACGAAGTTGGGAGCTGAAATTGTAGACATTGTCAGAAAATTCAGAAAATTTTTTTTTAATCGGAAGGTCCCATACCGTAATCTAAAAAAATATTTCGAATTTTTTGAATTTTCCGAATTTTTTTCTTGACTAAAAATCTCTGAAAATCGAGATAATGAATC</canonical_amplicon>
		<polymorphic_amplicon>CTTACCTGTGACTCCTCATTATTATCGATTGCCTCGCTGGCGATCTCTCGGAACCAAAAGTAGACGTGCTCTTTGTAGGCAAAGGTGGCGACGAAGTTGGGWGCTGAAATTGTAGACATTGTCAGAAAATTCAGAAAATTTTTTTTTAATCGGAAGGTCCCATACCGTAATCTAAAAAAATATTTCGAATTTTTTGAATTTTCCGAATTTTTTTCTTGACTAAAAATCTCTGAAAATCGAGATAATGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb624</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>892869</contig_pos>
        <strand></strand>
        <context>TCAGAAAATT[T/G]TTTTTTAATC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ACGAAGTTGGGAGCTGAAATTGTAGACATTGTCAGAAAATTCAGAAAATT</left_flank>
        <right_flank>TTTTTTAATCGGAAGGTCCCATACCGTAATCTAAAAAAATATTTCGAATT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTCGGACGTCAGAGTCCGGCGTGGAGAAGACCGTGTAGACGACGTGATCGTTGTTTCCAGCGTCGATGGGGTCCGAGACGGCTTCTGGAAGATTTTAGAAGGCGTTTGAGGTTTTAGATATATTTTAGAAGGAATAAATCGTTTCAGAAGATCCCGAAAACTCACTAAGCTCATTAAAATAGAACGGAGACGATCCAGAAGGCAGTGAACAATTGAGCCGCGCCTTCAAATAGCTGGTCCATCGCTCGTTGGCCGGACGGGCGCCCCCTTTATCGTTCTTGCACACCCTGGCGACACGGGCATAGATCTGAAAGGGTCTCAATTGGTGGTTAGAGGGTCTCCGAGGGTCACTAGGTGCTTACCTGTGACTCCTCATTATTATCGATTGCCTCGCTGGCGATCTCTCGGAACCAAAAGTAGACGTGCTCTTTGTAGGCAAAGGTGGCGACGAAGTTGGGAGCTGAAATTGTAGACATTGTCAGAAAATTCAGAAAATTTTTTTTTAATCGGAAGGTCCCATACCGTAATCTAAAAAAATATTTCGAATTTTTTGAATTTTCCGAATTTTTTTCTTGACTAAAAATCTCTGAAAATCGAGATAATGAATCGAAAAAAAAAATAAAATTATTGAATAATTAATAAATTACATCCCTCTGTCCTAATGCCTGCAGGGGACGGTACCTCCCTTCTATTTGCTAAGTGCCTTTTCCACATGACGTAATCACTAATTACCCGCAATCAGTCTTCAATCACTTACCATTCAACACTCTCGCATCGTAACTTTGCGTTCGAATGTTCGCTGACGCTTTTGTTGCCGGTGTTTCGTCGATTGTCTTCCTGTAATTAGTTAATGGGGGTACTGTACTTGAGAATTTTGGTGGAGAGAATGCAAATTCATTAAAATGTATTTACTAATTGAGGTGCAAAGTACATAGGCAGTTTGAAAAAAAATTCCAGAAAAAATTTTTTTTTGAAATTTTTTTTCCCTAAAATTCAAA</canonical>
            <polymorphic>CATTCGGACGTCAGAGTCCGGCGTGGAGAAGACCGTGTAGACGACGTGATCGTTGTTTCCAGCGTCGATGGGGTCCGAGACGGCTTCTGGAAGATTTTAGAAGGCGTTTGAGGTTTTAGATATATTTTAGAAGGAATAAATCGTTTCAGAAGATCCCGAAAACTCACTAAGCTCATTAAAATAGAACGGAGACGATCCAGAAGGCAGTGAACAATTGAGCCGCGCCTTCAAATAGCTGGTCCATCGCTCGTTGGCCGGACGGGCGCCCCCTTTATCGTTCTTGCACACCCTGGCGACACGGGCATAGATCTGAAAGGGTCTCAATTGGTGGTTAGAGGGTCTCCGAGGGTCACTAGGTGCTTACCTGTGACTCCTCATTATTATCGATTGCCTCGCTGGCGATCTCTCGGAACCAAAAGTAGACGTGCTCTTTGTAGGCAAAGGTGGCGACGAAGTTGGGAGCTGAAATTGTAGACATTGTCAGAAAATTCAGAAAATTKTTTTTTAATCGGAAGGTCCCATACCGTAATCTAAAAAAATATTTCGAATTTTTTGAATTTTCCGAATTTTTTTCTTGACTAAAAATCTCTGAAAATCGAGATAATGAATCGAAAAAAAAAATAAAATTATTGAATAATTAATAAATTACATCCCTCTGTCCTAATGCCTGCAGGGGACGGTACCTCCCTTCTATTTGCTAAGTGCCTTTTCCACATGACGTAATCACTAATTACCCGCAATCAGTCTTCAATCACTTACCATTCAACACTCTCGCATCGTAACTTTGCGTTCGAATGTTCGCTGACGCTTTTGTTGCCGGTGTTTCGTCGATTGTCTTCCTGTAATTAGTTAATGGGGGTACTGTACTTGAGAATTTTGGTGGAGAGAATGCAAATTCATTAAAATGTATTTACTAATTGAGGTGCAAAGTACATAGGCAGTTTGAAAAAAAATTCCAGAAAAAATTTTTTTTTGAAATTTTTTTTCCCTAAAATTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>486 308 58 51 21 16 13 12 9 9 9 8</canonical_bands>
                <polymorphic_bands>486 308 60 58 21 16 13 12 9 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTACCTGTGACTCCTCATTATT</pcr_primer_p1>
		<pcr_primer_p2>GATTCATTATCTCGATTTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTTACCTGTGACTCCTCATTATTATCGATTGCCTCGCTGGCGATCTCTCGGAACCAAAAGTAGACGTGCTCTTTGTAGGCAAAGGTGGCGACGAAGTTGGGAGCTGAAATTGTAGACATTGTCAGAAAATTCAGAAAATTTTTTTTTAATCGGAAGGTCCCATACCGTAATCTAAAAAAATATTTCGAATTTTTTGAATTTTCCGAATTTTTTTCTTGACTAAAAATCTCTGAAAATCGAGATAATGAATC</canonical_amplicon>
		<polymorphic_amplicon>CTTACCTGTGACTCCTCATTATTATCGATTGCCTCGCTGGCGATCTCTCGGAACCAAAAGTAGACGTGCTCTTTGTAGGCAAAGGTGGCGACGAAGTTGGGAGCTGAAATTGTAGACATTGTCAGAAAATTCAGAAAATTKTTTTTTAATCGGAAGGTCCCATACCGTAATCTAAAAAAATATTTCGAATTTTTTGAATTTTCCGAATTTTTTTCTTGACTAAAAATCTCTGAAAATCGAGATAATGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb625</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>892908</contig_pos>
        <strand></strand>
        <context>ATCTAAAAAA[A/T]TATTTCGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCAGAAAATTTTTTTTTAATCGGAAGGTCCCATACCGTAATCTAAAAAA</left_flank>
        <right_flank>TATTTCGAATTTTTTGAATTTTCCGAATTTTTTTCTTGACTAAAAATCTC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACGACGTGATCGTTGTTTCCAGCGTCGATGGGGTCCGAGACGGCTTCTGGAAGATTTTAGAAGGCGTTTGAGGTTTTAGATATATTTTAGAAGGAATAAATCGTTTCAGAAGATCCCGAAAACTCACTAAGCTCATTAAAATAGAACGGAGACGATCCAGAAGGCAGTGAACAATTGAGCCGCGCCTTCAAATAGCTGGTCCATCGCTCGTTGGCCGGACGGGCGCCCCCTTTATCGTTCTTGCACACCCTGGCGACACGGGCATAGATCTGAAAGGGTCTCAATTGGTGGTTAGAGGGTCTCCGAGGGTCACTAGGTGCTTACCTGTGACTCCTCATTATTATCGATTGCCTCGCTGGCGATCTCTCGGAACCAAAAGTAGACGTGCTCTTTGTAGGCAAAGGTGGCGACGAAGTTGGGAGCTGAAATTGTAGACATTGTCAGAAAATTCAGAAAATTTTTTTTTAATCGGAAGGTCCCATACCGTAATCTAAAAAAATATTTCGAATTTTTTGAATTTTCCGAATTTTTTTCTTGACTAAAAATCTCTGAAAATCGAGATAATGAATCGAAAAAAAAAATAAAATTATTGAATAATTAATAAATTACATCCCTCTGTCCTAATGCCTGCAGGGGACGGTACCTCCCTTCTATTTGCTAAGTGCCTTTTCCACATGACGTAATCACTAATTACCCGCAATCAGTCTTCAATCACTTACCATTCAACACTCTCGCATCGTAACTTTGCGTTCGAATGTTCGCTGACGCTTTTGTTGCCGGTGTTTCGTCGATTGTCTTCCTGTAATTAGTTAATGGGGGTACTGTACTTGAGAATTTTGGTGGAGAGAATGCAAATTCATTAAAATGTATTTACTAATTGAGGTGCAAAGTACATAGGCAGTTTGAAAAAAAATTCCAGAAAAAATTTTTTTTTGAAATTTTTTTTCCCTAAAATTCAAAATTGCTCAATTTCGATAAAAATCGATACCACGAGCTGAA</canonical>
            <polymorphic>GACGACGTGATCGTTGTTTCCAGCGTCGATGGGGTCCGAGACGGCTTCTGGAAGATTTTAGAAGGCGTTTGAGGTTTTAGATATATTTTAGAAGGAATAAATCGTTTCAGAAGATCCCGAAAACTCACTAAGCTCATTAAAATAGAACGGAGACGATCCAGAAGGCAGTGAACAATTGAGCCGCGCCTTCAAATAGCTGGTCCATCGCTCGTTGGCCGGACGGGCGCCCCCTTTATCGTTCTTGCACACCCTGGCGACACGGGCATAGATCTGAAAGGGTCTCAATTGGTGGTTAGAGGGTCTCCGAGGGTCACTAGGTGCTTACCTGTGACTCCTCATTATTATCGATTGCCTCGCTGGCGATCTCTCGGAACCAAAAGTAGACGTGCTCTTTGTAGGCAAAGGTGGCGACGAAGTTGGGAGCTGAAATTGTAGACATTGTCAGAAAATTCAGAAAATTTTTTTTTAATCGGAAGGTCCCATACCGTAATCTAAAAAAWTATTTCGAATTTTTTGAATTTTCCGAATTTTTTTCTTGACTAAAAATCTCTGAAAATCGAGATAATGAATCGAAAAAAAAAATAAAATTATTGAATAATTAATAAATTACATCCCTCTGTCCTAATGCCTGCAGGGGACGGTACCTCCCTTCTATTTGCTAAGTGCCTTTTCCACATGACGTAATCACTAATTACCCGCAATCAGTCTTCAATCACTTACCATTCAACACTCTCGCATCGTAACTTTGCGTTCGAATGTTCGCTGACGCTTTTGTTGCCGGTGTTTCGTCGATTGTCTTCCTGTAATTAGTTAATGGGGGTACTGTACTTGAGAATTTTGGTGGAGAGAATGCAAATTCATTAAAATGTATTTACTAATTGAGGTGCAAAGTACATAGGCAGTTTGAAAAAAAATTCCAGAAAAAATTTTTTTTTGAAATTTTTTTTCCCTAAAATTCAAAATTGCTCAATTTCGATAAAAATCGATACCACGAGCTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTACCTGTGACTCCTCATTATT</pcr_primer_p1>
		<pcr_primer_p2>GATTCATTATCTCGATTTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTTACCTGTGACTCCTCATTATTATCGATTGCCTCGCTGGCGATCTCTCGGAACCAAAAGTAGACGTGCTCTTTGTAGGCAAAGGTGGCGACGAAGTTGGGAGCTGAAATTGTAGACATTGTCAGAAAATTCAGAAAATTTTTTTTTAATCGGAAGGTCCCATACCGTAATCTAAAAAAATATTTCGAATTTTTTGAATTTTCCGAATTTTTTTCTTGACTAAAAATCTCTGAAAATCGAGATAATGAATC</canonical_amplicon>
		<polymorphic_amplicon>CTTACCTGTGACTCCTCATTATTATCGATTGCCTCGCTGGCGATCTCTCGGAACCAAAAGTAGACGTGCTCTTTGTAGGCAAAGGTGGCGACGAAGTTGGGAGCTGAAATTGTAGACATTGTCAGAAAATTCAGAAAATTTTTTTTTAATCGGAAGGTCCCATACCGTAATCTAAAAAAWTATTTCGAATTTTTTGAATTTTCCGAATTTTTTTCTTGACTAAAAATCTCTGAAAATCGAGATAATGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb626</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>895184</contig_pos>
        <strand>+</strand>
        <context>AAAGCGTCGA[G/T]AGCGAGAGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGA</left_flank>
        <right_flank>AGCGAGAGATTGTAGACGGCGTTTCTGGAAAATTCCTTGTTTTTTTTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTAATTTTCGGAAAAATCCTGTTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGAGAGCGAGAGATTGTAGACGGCGTTTCTGGAAAATTCCTTGTTTTTTTTCAAGAATTTCTGCTATCCTATCCAATTTCAACCCTCTAAACATCATGTTTTTTTTTCATTTTTTCCGAAATTTCCTCTAATTTCAACCCCCTAAAACTGAAAAAACCGTAGTAAAATCGGCACTAACGTAGTATCAAATTTTTTGAATTTGGTGCCAAAATGCGGGTGTCCCAGAGGAAGGGAAACAAGGCGATTATTCTGCCTGAGGTTATAATTTTGAAAAAAAATTGCAATTTTCACTGATTTTCGCCAATTTCTGCACTTTTTGGCTGAAATGTTTTTTTGAAAAATTTTAGTTTTTTGTCTCAAATTATAGGCTTATGTGTAAAAACGCCTTGTTTCCCTTCCTCTGGGACACCCGCATTTTGGCGCCAAATTCCAAAAATTAGCCCCCCCCCCCCCCCAAACTAAGCTAGCGCCGTTTCTCTCGTTGTTTTTTTTTCACAAAGAAAG</canonical>
            <polymorphic>TTCTAATTTTCGGAAAAATCCTGTTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGAKAGCGAGAGATTGTAGACGGCGTTTCTGGAAAATTCCTTGTTTTTTTTCAAGAATTTCTGCTATCCTATCCAATTTCAACCCTCTAAACATCATGTTTTTTTTTCATTTTTTCCGAAATTTCCTCTAATTTCAACCCCCTAAAACTGAAAAAACCGTAGTAAAATCGGCACTAACGTAGTATCAAATTTTTTGAATTTGGTGCCAAAATGCGGGTGTCCCAGAGGAAGGGAAACAAGGCGATTATTCTGCCTGAGGTTATAATTTTGAAAAAAAATTGCAATTTTCACTGATTTTCGCCAATTTCTGCACTTTTTGGCTGAAATGTTTTTTTGAAAAATTTTAGTTTTTTGTCTCAAATTATAGGCTTATGTGTAAAAACGCCTTGTTTCCCTTCCTCTGGGACACCCGCATTTTGGCGCCAAATTCCAAAAATTAGCCCCCCCCCCCCCCCAAACTAAGCTAGCGCCGTTTCTCTCGTTGTTTTTTTTTCACAAAGAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>452 236 105 56 50 50 28 23</canonical_bands>
                <polymorphic_bands>452 236 105 78 56 50 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGATTTTTGAGCTTCCAGAC</pcr_primer_p1>
		<pcr_primer_p2>TACTACGTTAGTGCCGATTTTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGAGAGCGAGAGATTGTAGACGGCGTTTCTGGAAAATTCCTTGTTTTTTTTCAAGAATTTCTGCTATCCTATCCAATTTCAACCCTCTAAACATCATGTTTTTTTTTCATTTTTTCCGAAATTTCCTCTAATTTCAACCCCCTAAAACTGAAAAAACCGTAGTAAAATCGGCACTAACGTAGTA</canonical_amplicon>
		<polymorphic_amplicon>TATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGAKAGCGAGAGATTGTAGACGGCGTTTCTGGAAAATTCCTTGTTTTTTTTCAAGAATTTCTGCTATCCTATCCAATTTCAACCCTCTAAACATCATGTTTTTTTTTCATTTTTTCCGAAATTTCCTCTAATTTCAACCCCCTAAAACTGAAAAAACCGTAGTAAAATCGGCACTAACGTAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb627</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>895068</contig_pos>
        <strand>+</strand>
        <context>TTCTGAAAAT[A/C]TTTTTTCTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAAT</left_flank>
        <right_flank>TTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTCAATTTTTCAGAATTTGCCTGAAAATGCGATTTTTTCGTAATTTTAAGAAAATTATATTTTTGTATTTTCTTAAAATTCAAAATTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTGTTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGAGAGCGAGAGATTGTAGACGGCGTTTCTGGAAAATTCCTTGTTTTTTTTCAAGAATTTCTGCTATCCTATCCAATTTCAACCCTCTAAACATCATGTTTTTTTTTCATTTTTTCCGAAATTTCCTCTAATTTCAACCCCCTAAAACTGAAAAAACCGTAGTAAAATCGGCACTAACGTAGTATCAAATTTTTTGAATTTGGTGCCAAAATGCGGGTGTCCCAGAGGAAGGGAAACAAGGCGATTATTCTGCCTGAGGTTATAATTTTGAAAAAAAATTGCAATTTTCACTGATTTTCGCCAATTTCTGCACTTTTTGGCTGAAATGTTTTTTTGAAAAATTTTAGTTTTTTGTCTCAAATTATAGGCTTATGTGTAAAAACGCCTT</canonical>
            <polymorphic>AAAATTCAATTTTTCAGAATTTGCCTGAAAATGCGATTTTTTCGTAATTTTAAGAAAATTATATTTTTGTATTTTCTTAAAATTCAAAATTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTGTTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATMTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGAGAGCGAGAGATTGTAGACGGCGTTTCTGGAAAATTCCTTGTTTTTTTTCAAGAATTTCTGCTATCCTATCCAATTTCAACCCTCTAAACATCATGTTTTTTTTTCATTTTTTCCGAAATTTCCTCTAATTTCAACCCCCTAAAACTGAAAAAACCGTAGTAAAATCGGCACTAACGTAGTATCAAATTTTTTGAATTTGGTGCCAAAATGCGGGTGTCCCAGAGGAAGGGAAACAAGGCGATTATTCTGCCTGAGGTTATAATTTTGAAAAAAAATTGCAATTTTCACTGATTTTCGCCAATTTCTGCACTTTTTGGCTGAAATGTTTTTTTGAAAAATTTTAGTTTTTTGTCTCAAATTATAGGCTTATGTGTAAAAACGCCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTTCTTGAGATTCGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>GCTTTCTGTGAATCATGTAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>215</pcr_amplicon_size>
		<canonical_amplicon>GAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGC</canonical_amplicon>
		<polymorphic_amplicon>GAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATMTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb631</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>895017</contig_pos>
        <strand>+</strand>
        <context>AATTTTTTGA[A/T]AATTCGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGA</left_flank>
        <right_flank>AATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTTAATTTTCCGGAAATTCAGTTTTTCACTATTTCTAAAAATTTTATTAAAATTCAATTTTTCAGAATTTGCCTGAAAATGCGATTTTTTCGTAATTTTAAGAAAATTATATTTTTGTATTTTCTTAAAATTCAAAATTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTGTTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGAGAGCGAGAGATTGTAGACGGCGTTTCTGGAAAATTCCTTGTTTTTTTTCAAGAATTTCTGCTATCCTATCCAATTTCAACCCTCTAAACATCATGTTTTTTTTTCATTTTTTCCGAAATTTCCTCTAATTTCAACCCCCTAAAACTGAAAAAACCGTAGTAAAATCGGCACTAACGTAGTATCAAATTTTTTGAATTTGGTGCCAAAATGCGGGTGTCCCAGAGGAAGGGAAACAAGGCGATTATTCTGCCTGAGGTTATAATTTTGAAAAAAAATTGCAATTTTCACTGATTTTCGCCAATTTCTGCACTTTTTGGCTGAAATGTTTTTTTGA</canonical>
            <polymorphic>TTTCTTAATTTTCCGGAAATTCAGTTTTTCACTATTTCTAAAAATTTTATTAAAATTCAATTTTTCAGAATTTGCCTGAAAATGCGATTTTTTCGTAATTTTAAGAAAATTATATTTTTGTATTTTCTTAAAATTCAAAATTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTGTTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGAWAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGAGAGCGAGAGATTGTAGACGGCGTTTCTGGAAAATTCCTTGTTTTTTTTCAAGAATTTCTGCTATCCTATCCAATTTCAACCCTCTAAACATCATGTTTTTTTTTCATTTTTTCCGAAATTTCCTCTAATTTCAACCCCCTAAAACTGAAAAAACCGTAGTAAAATCGGCACTAACGTAGTATCAAATTTTTTGAATTTGGTGCCAAAATGCGGGTGTCCCAGAGGAAGGGAAACAAGGCGATTATTCTGCCTGAGGTTATAATTTTGAAAAAAAATTGCAATTTTCACTGATTTTCGCCAATTTCTGCACTTTTTGGCTGAAATGTTTTTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTTCTTGAGATTCGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>GCTTTCTGTGAATCATGTAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>215</pcr_amplicon_size>
		<canonical_amplicon>GAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGC</canonical_amplicon>
		<polymorphic_amplicon>GAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGAWAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb634</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>894940</contig_pos>
        <strand>+</strand>
        <context>AAATTCTTGG[G/T]TTTTCTGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGG</left_flank>
        <right_flank>TTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTATATATTTTACAATTTTCTGAGAATTTTTCGAATTTTCTTTTTTAAATAAAATTTTCAGAAGAATCAATTTTTTTCTTAATTTTCCGGAAATTCAGTTTTTCACTATTTCTAAAAATTTTATTAAAATTCAATTTTTCAGAATTTGCCTGAAAATGCGATTTTTTCGTAATTTTAAGAAAATTATATTTTTGTATTTTCTTAAAATTCAAAATTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTGTTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGAGAGCGAGAGATTGTAGACGGCGTTTCTGGAAAATTCCTTGTTTTTTTTCAAGAATTTCTGCTATCCTATCCAATTTCAACCCTCTAAACATCATGTTTTTTTTTCATTTTTTCCGAAATTTCCTCTAATTTCAACCCCCTAAAACTGAAAAAACCGTAGTAAAATCGGCACTAACGTAGTATCAAATTTTTTGAATTTGGTGCCAAAATGCGGGTGTCCCAGAGGAAGGGAAACAAGGCGATTATTCTGCCTGAGGT</canonical>
            <polymorphic>AAATTATATATTTTACAATTTTCTGAGAATTTTTCGAATTTTCTTTTTTAAATAAAATTTTCAGAAGAATCAATTTTTTTCTTAATTTTCCGGAAATTCAGTTTTTCACTATTTCTAAAAATTTTATTAAAATTCAATTTTTCAGAATTTGCCTGAAAATGCGATTTTTTCGTAATTTTAAGAAAATTATATTTTTGTATTTTCTTAAAATTCAAAATTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTGTTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGKTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGAGAGCGAGAGATTGTAGACGGCGTTTCTGGAAAATTCCTTGTTTTTTTTCAAGAATTTCTGCTATCCTATCCAATTTCAACCCTCTAAACATCATGTTTTTTTTTCATTTTTTCCGAAATTTCCTCTAATTTCAACCCCCTAAAACTGAAAAAACCGTAGTAAAATCGGCACTAACGTAGTATCAAATTTTTTGAATTTGGTGCCAAAATGCGGGTGTCCCAGAGGAAGGGAAACAAGGCGATTATTCTGCCTGAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTGAGAATCCAATTATTAAAGA</pcr_primer_p1>
		<pcr_primer_p2>TGGAAGCTCAAAAATCATAGA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>TTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCA</canonical_amplicon>
		<polymorphic_amplicon>TTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGKTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb639</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>894836</contig_pos>
        <strand>+</strand>
        <context>AAAAATCYAT[A/T]TTTCTGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCAT</left_flank>
        <right_flank>TTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGTTTCCAGTCGATTTTCTGGAAAGAATATGGGGTACAGGGGAGCTTCTTGCTAAAAATTCAAATTTTTGGTTTTTCTGAAAATTAGTTTTTTGAATTTTCAAAAATTATATATTTTACAATTTTCTGAGAATTTTTCGAATTTTCTTTTTTAAATAAAATTTTCAGAAGAATCAATTTTTTTCTTAATTTTCCGGAAATTCAGTTTTTCACTATTTCTAAAAATTTTATTAAAATTCAATTTTTCAGAATTTGCCTGAAAATGCGATTTTTTCGTAATTTTAAGAAAATTATATTTTTGTATTTTCTTAAAATTCAAAATTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTGTTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGAGAGCGAGAGATTGTAGACGGCGTTTCTGGAAAATTCCTTGTTTTTTTTCAAGAATTTCTGCTATCCTATCCAATTTCAACCCTCTAAACATCATGTTTTTTTTTCATTTTTTCCGAAATTTCCTCTAATTTCAACCCCCTAAAACTGAAAAAA</canonical>
            <polymorphic>GGGTTTCCAGTCGATTTTCTGGAAAGAATATGGGGTACAGGGGAGCTTCTTGCTAAAAATTCAAATTTTTGGTTTTTCTGAAAATTAGTTTTTTGAATTTTCAAAAATTATATATTTTACAATTTTCTGAGAATTTTTCGAATTTTCTTTTTTAAATAAAATTTTCAGAAGAATCAATTTTTTTCTTAATTTTCCGGAAATTCAGTTTTTCACTATTTCTAAAAATTTTATTAAAATTCAATTTTTCAGAATTTGCCTGAAAATGCGATTTTTTCGTAATTTTAAGAAAATTATATTTTTGTATTTTCTTAAAATTCAAAATTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTGTTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATWTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGAGAGCGAGAGATTGTAGACGGCGTTTCTGGAAAATTCCTTGTTTTTTTTCAAGAATTTCTGCTATCCTATCCAATTTCAACCCTCTAAACATCATGTTTTTTTTTCATTTTTTCCGAAATTTCCTCTAATTTCAACCCCCTAAAACTGAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGCTCAAATTTTTGGATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTGTGAATCATGTAAGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>402</pcr_amplicon_size>
		<canonical_amplicon>GATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAA</canonical_amplicon>
		<polymorphic_amplicon>GATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATWTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb640</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>894833</contig_pos>
        <strand>+</strand>
        <context>CTGAAAAATC[C/T]ATWTTTCTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATC</left_flank>
        <right_flank>ATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGGGGTTTCCAGTCGATTTTCTGGAAAGAATATGGGGTACAGGGGAGCTTCTTGCTAAAAATTCAAATTTTTGGTTTTTCTGAAAATTAGTTTTTTGAATTTTCAAAAATTATATATTTTACAATTTTCTGAGAATTTTTCGAATTTTCTTTTTTAAATAAAATTTTCAGAAGAATCAATTTTTTTCTTAATTTTCCGGAAATTCAGTTTTTCACTATTTCTAAAAATTTTATTAAAATTCAATTTTTCAGAATTTGCCTGAAAATGCGATTTTTTCGTAATTTTAAGAAAATTATATTTTTGTATTTTCTTAAAATTCAAAATTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTGTTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGAGAGCGAGAGATTGTAGACGGCGTTTCTGGAAAATTCCTTGTTTTTTTTCAAGAATTTCTGCTATCCTATCCAATTTCAACCCTCTAAACATCATGTTTTTTTTTCATTTTTTCCGAAATTTCCTCTAATTTCAACCCCCTAAAACTGAAA</canonical>
            <polymorphic>CGGGGGTTTCCAGTCGATTTTCTGGAAAGAATATGGGGTACAGGGGAGCTTCTTGCTAAAAATTCAAATTTTTGGTTTTTCTGAAAATTAGTTTTTTGAATTTTCAAAAATTATATATTTTACAATTTTCTGAGAATTTTTCGAATTTTCTTTTTTAAATAAAATTTTCAGAAGAATCAATTTTTTTCTTAATTTTCCGGAAATTCAGTTTTTCACTATTTCTAAAAATTTTATTAAAATTCAATTTTTCAGAATTTGCCTGAAAATGCGATTTTTTCGTAATTTTAAGAAAATTATATTTTTGTATTTTCTTAAAATTCAAAATTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTGTTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCYATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGAGAGCGAGAGATTGTAGACGGCGTTTCTGGAAAATTCCTTGTTTTTTTTCAAGAATTTCTGCTATCCTATCCAATTTCAACCCTCTAAACATCATGTTTTTTTTTCATTTTTTCCGAAATTTCCTCTAATTTCAACCCCCTAAAACTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGCTCAAATTTTTGGATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTGTGAATCATGTAAGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>402</pcr_amplicon_size>
		<canonical_amplicon>GATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAA</canonical_amplicon>
		<polymorphic_amplicon>GATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCYATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb641</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>894803</contig_pos>
        <strand>+</strand>
        <context>TTTYCAGAAA[A/T]TTTCATTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAA</left_flank>
        <right_flank>TTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCATTATACATTCTTCAATGTGCTCCGCCGGGGGTTTCCAGTCGATTTTCTGGAAAGAATATGGGGTACAGGGGAGCTTCTTGCTAAAAATTCAAATTTTTGGTTTTTCTGAAAATTAGTTTTTTGAATTTTCAAAAATTATATATTTTACAATTTTCTGAGAATTTTTCGAATTTTCTTTTTTAAATAAAATTTTCAGAAGAATCAATTTTTTTCTTAATTTTCCGGAAATTCAGTTTTTCACTATTTCTAAAAATTTTATTAAAATTCAATTTTTCAGAATTTGCCTGAAAATGCGATTTTTTCGTAATTTTAAGAAAATTATATTTTTGTATTTTCTTAAAATTCAAAATTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTGTTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGAGAGCGAGAGATTGTAGACGGCGTTTCTGGAAAATTCCTTGTTTTTTTTCAAGAATTTCTGCTATCCTATCCAATTTCAACCCTCTAAACATCATGTTTTTTTTTCATTTTTTCCGAAATT</canonical>
            <polymorphic>CTTCATTATACATTCTTCAATGTGCTCCGCCGGGGGTTTCCAGTCGATTTTCTGGAAAGAATATGGGGTACAGGGGAGCTTCTTGCTAAAAATTCAAATTTTTGGTTTTTCTGAAAATTAGTTTTTTGAATTTTCAAAAATTATATATTTTACAATTTTCTGAGAATTTTTCGAATTTTCTTTTTTAAATAAAATTTTCAGAAGAATCAATTTTTTTCTTAATTTTCCGGAAATTCAGTTTTTCACTATTTCTAAAAATTTTATTAAAATTCAATTTTTCAGAATTTGCCTGAAAATGCGATTTTTTCGTAATTTTAAGAAAATTATATTTTTGTATTTTCTTAAAATTCAAAATTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTGTTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAWTTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGAGAGCGAGAGATTGTAGACGGCGTTTCTGGAAAATTCCTTGTTTTTTTTCAAGAATTTCTGCTATCCTATCCAATTTCAACCCTCTAAACATCATGTTTTTTTTTCATTTTTTCCGAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>136 90 68 63 62 39 36 32 28 27 27 25 25 25 24 21 20 19 19 19 17 17 15 15 15 15 15 13 12 11 11 11 9 7 6 6</canonical_bands>
                <polymorphic_bands>136 90 68 63 62 39 36 34 32 28 27 27 25 25 25 24 21 20 19 19 17 17 15 15 15 15 13 12 11 11 11 9 7 6 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>118 90 53 45 28 28 27 25 25 25 24 21 19 19 19 19 19 19 18 17 16 16 15 15 15 15 15 13 13 12 12 12 11 11 11 11 11 11 11 11 10 10 9 9 9 7 6 6 5 5 5 4</canonical_bands>
                <polymorphic_bands>118 90 53 45 34 28 28 27 25 25 25 24 21 19 19 19 19 19 18 17 16 16 15 15 15 15 13 13 12 12 12 11 11 11 11 11 11 11 11 10 10 9 9 9 7 6 6 5 5 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCAGTTTTCCACCTATTGAA</pcr_primer_p1>
		<pcr_primer_p2>TGGAAGCTCAAAAATCATAGA</pcr_primer_p2>
		<pcr_amplicon_size>413</pcr_amplicon_size>
		<canonical_amplicon>AATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCA</canonical_amplicon>
		<polymorphic_amplicon>AATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAWTTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb642</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>894796</contig_pos>
        <strand>+</strand>
        <context>TTTTGGATTT[C/T]CAGAAAWTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTT</left_flank>
        <right_flank>CAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTCCCTTCATTATACATTCTTCAATGTGCTCCGCCGGGGGTTTCCAGTCGATTTTCTGGAAAGAATATGGGGTACAGGGGAGCTTCTTGCTAAAAATTCAAATTTTTGGTTTTTCTGAAAATTAGTTTTTTGAATTTTCAAAAATTATATATTTTACAATTTTCTGAGAATTTTTCGAATTTTCTTTTTTAAATAAAATTTTCAGAAGAATCAATTTTTTTCTTAATTTTCCGGAAATTCAGTTTTTCACTATTTCTAAAAATTTTATTAAAATTCAATTTTTCAGAATTTGCCTGAAAATGCGATTTTTTCGTAATTTTAAGAAAATTATATTTTTGTATTTTCTTAAAATTCAAAATTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTGTTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGAGAGCGAGAGATTGTAGACGGCGTTTCTGGAAAATTCCTTGTTTTTTTTCAAGAATTTCTGCTATCCTATCCAATTTCAACCCTCTAAACATCATGTTTTTTTTTCATTTTTTC</canonical>
            <polymorphic>ATTTTCCCTTCATTATACATTCTTCAATGTGCTCCGCCGGGGGTTTCCAGTCGATTTTCTGGAAAGAATATGGGGTACAGGGGAGCTTCTTGCTAAAAATTCAAATTTTTGGTTTTTCTGAAAATTAGTTTTTTGAATTTTCAAAAATTATATATTTTACAATTTTCTGAGAATTTTTCGAATTTTCTTTTTTAAATAAAATTTTCAGAAGAATCAATTTTTTTCTTAATTTTCCGGAAATTCAGTTTTTCACTATTTCTAAAAATTTTATTAAAATTCAATTTTTCAGAATTTGCCTGAAAATGCGATTTTTTCGTAATTTTAAGAAAATTATATTTTTGTATTTTCTTAAAATTCAAAATTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTGTTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTYCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGAGAGCGAGAGATTGTAGACGGCGTTTCTGGAAAATTCCTTGTTTTTTTTCAAGAATTTCTGCTATCCTATCCAATTTCAACCCTCTAAACATCATGTTTTTTTTTCATTTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>235 119 112 102 98 81 77 49 39 28 26 17 17</canonical_bands>
                <polymorphic_bands>235 128 119 112 98 81 77 49 39 28 17 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCAGTTTTCCACCTATTGAA</pcr_primer_p1>
		<pcr_primer_p2>TGGAAGCTCAAAAATCATAGA</pcr_primer_p2>
		<pcr_amplicon_size>413</pcr_amplicon_size>
		<canonical_amplicon>AATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCA</canonical_amplicon>
		<polymorphic_amplicon>AATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTYCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb643</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>894761</contig_pos>
        <strand>+</strand>
        <context>AAAATTCAAT[G/T]TTGGAATTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAAT</left_flank>
        <right_flank>TTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGGACCCGAATGTAGTTCTGACAGTCCGTTTTCGATTTTCCCTTCATTATACATTCTTCAATGTGCTCCGCCGGGGGTTTCCAGTCGATTTTCTGGAAAGAATATGGGGTACAGGGGAGCTTCTTGCTAAAAATTCAAATTTTTGGTTTTTCTGAAAATTAGTTTTTTGAATTTTCAAAAATTATATATTTTACAATTTTCTGAGAATTTTTCGAATTTTCTTTTTTAAATAAAATTTTCAGAAGAATCAATTTTTTTCTTAATTTTCCGGAAATTCAGTTTTTCACTATTTCTAAAAATTTTATTAAAATTCAATTTTTCAGAATTTGCCTGAAAATGCGATTTTTTCGTAATTTTAAGAAAATTATATTTTTGTATTTTCTTAAAATTCAAAATTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTGTTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGAGAGCGAGAGATTGTAGACGGCGTTTCTGGAAAATTCCTTGTTTTTTTTCAAGAATTTCTGCTATCCTATCCAATTTCA</canonical>
            <polymorphic>CAGGACCCGAATGTAGTTCTGACAGTCCGTTTTCGATTTTCCCTTCATTATACATTCTTCAATGTGCTCCGCCGGGGGTTTCCAGTCGATTTTCTGGAAAGAATATGGGGTACAGGGGAGCTTCTTGCTAAAAATTCAAATTTTTGGTTTTTCTGAAAATTAGTTTTTTGAATTTTCAAAAATTATATATTTTACAATTTTCTGAGAATTTTTCGAATTTTCTTTTTTAAATAAAATTTTCAGAAGAATCAATTTTTTTCTTAATTTTCCGGAAATTCAGTTTTTCACTATTTCTAAAAATTTTATTAAAATTCAATTTTTCAGAATTTGCCTGAAAATGCGATTTTTTCGTAATTTTAAGAAAATTATATTTTTGTATTTTCTTAAAATTCAAAATTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTGTTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATKTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGAGAGCGAGAGATTGTAGACGGCGTTTCTGGAAAATTCCTTGTTTTTTTTCAAGAATTTCTGCTATCCTATCCAATTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAATTCAGTTTTTCACTATTTC</pcr_primer_p1>
		<pcr_primer_p2>TGGAAGCTCAAAAATCATAGA</pcr_primer_p2>
		<pcr_amplicon_size>602</pcr_amplicon_size>
		<canonical_amplicon>GGAAATTCAGTTTTTCACTATTTCTAAAAATTTTATTAAAATTCAATTTTTCAGAATTTGCCTGAAAATGCGATTTTTTCGTAATTTTAAGAAAATTATATTTTTGTATTTTCTTAAAATTCAAAATTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTGTTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCA</canonical_amplicon>
		<polymorphic_amplicon>GGAAATTCAGTTTTTCACTATTTCTAAAAATTTTATTAAAATTCAATTTTTCAGAATTTGCCTGAAAATGCGATTTTTTCGTAATTTTAAGAAAATTATATTTTTGTATTTTCTTAAAATTCAAAATTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTGTTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATKTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb645</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>925934</contig_pos>
        <strand>+</strand>
        <context>ACACCAAAGT[C/T]GACCCGAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTTCAATCGAAAATCTTTGAATTTCATTGAAAAAACAACACCAAAGT</left_flank>
        <right_flank>GACCCGAAATTGCACTTTTTTTTTTTTGATTTTCAGCAAATTTTCAACTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGCTCGAAAATTTGGAATTTGAGCATTTCTGAGCTCATTTTCAACCTAGAATTCTTCGAATTGCTCTCCAAAAGTGCACTTTTTCGATAATTTATATTCTTTTAACTCATTTTCAATCGAAAATCTTGAAATTTCTTTGAAAAAACCACCAAATGTCACCCAAAATCCTTCAAATTGCTCTCCAAATTCTCCTAATTTAGGCTTGAAAATGGGGAATTTGACGATTTTTGGTTGAAAATGGACCCCGAATTTCGATTTTTGGCTAATTTGCGCATTTCTAGGCTCATTTTCAACCCAAAATTGCTCCAAAAATGCACTTTTCCAGATTTCCAGCATATTTTGATTTTTTCGCTTTCTCGAAAATGGGAAATTCGAGCGTTTCTAGGCTCATTTTCTCAAAATTCCTCTTAAAAATTGAACATTTTCGACAATTTATGTTTTTTTGGTTAATTTTCAATCGAAAATCTTTGAATTTCATTGAAAAAACAACACCAAAGTTGACCCGAAATTGCACTTTTTTTTTTTTGATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTTTGAAGATTTTTGGGTTGAAAATTGAGCCAAAATTACTTTTTTTGAGCATTTCTAAGCTCATTTTTCAGCCCAAAACCCTTCAAATTTTGAATAATTTTCACTTTTTGGCTCATTTTCTATCAAAAATCTTTAGATTTGAAAAAAAACCACCAAAATTACCCCCCCCCCCCCGAATTTTCAAAAATTTCGCTGGAAAAATAGGAAATTTGAAGATTTTTGAGTTGAAAATTAAGCCAAAATTGCTGTTTTGTCTAATTTGAGCACATTTCTTTGCTCATTTTTTAGCCCAAAATCCTTTAAATTCGGCTTGAAAAGTGCACTTTTTAGATGATTTTTGAAGATTTTGGGTTGAAAACTAGGCTAATATTCTGTTGAAACTACCAAAATTAACCCGAAAACCCTTCAAATTCATCTCGATATTCTCCA</canonical>
            <polymorphic>TGGCTCGAAAATTTGGAATTTGAGCATTTCTGAGCTCATTTTCAACCTAGAATTCTTCGAATTGCTCTCCAAAAGTGCACTTTTTCGATAATTTATATTCTTTTAACTCATTTTCAATCGAAAATCTTGAAATTTCTTTGAAAAAACCACCAAATGTCACCCAAAATCCTTCAAATTGCTCTCCAAATTCTCCTAATTTAGGCTTGAAAATGGGGAATTTGACGATTTTTGGTTGAAAATGGACCCCGAATTTCGATTTTTGGCTAATTTGCGCATTTCTAGGCTCATTTTCAACCCAAAATTGCTCCAAAAATGCACTTTTCCAGATTTCCAGCATATTTTGATTTTTTCGCTTTCTCGAAAATGGGAAATTCGAGCGTTTCTAGGCTCATTTTCTCAAAATTCCTCTTAAAAATTGAACATTTTCGACAATTTATGTTTTTTTGGTTAATTTTCAATCGAAAATCTTTGAATTTCATTGAAAAAACAACACCAAAGTYGACCCGAAATTGCACTTTTTTTTTTTTGATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTTTGAAGATTTTTGGGTTGAAAATTGAGCCAAAATTACTTTTTTTGAGCATTTCTAAGCTCATTTTTCAGCCCAAAACCCTTCAAATTTTGAATAATTTTCACTTTTTGGCTCATTTTCTATCAAAAATCTTTAGATTTGAAAAAAAACCACCAAAATTACCCCCCCCCCCCCGAATTTTCAAAAATTTCGCTGGAAAAATAGGAAATTTGAAGATTTTTGAGTTGAAAATTAAGCCAAAATTGCTGTTTTGTCTAATTTGAGCACATTTCTTTGCTCATTTTTTAGCCCAAAATCCTTTAAATTCGGCTTGAAAAGTGCACTTTTTAGATGATTTTTGAAGATTTTGGGTTGAAAACTAGGCTAATATTCTGTTGAAACTACCAAAATTAACCCGAAAACCCTTCAAATTCATCTCGATATTCTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTCTAGGCTCATTTTCTCAA</pcr_primer_p1>
		<pcr_primer_p2>AGTAATTTTGGCTCAATTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>GTTTCTAGGCTCATTTTCTCAAAATTCCTCTTAAAAATTGAACATTTTCGACAATTTATGTTTTTTTGGTTAATTTTCAATCGAAAATCTTTGAATTTCATTGAAAAAACAACACCAAAGTTGACCCGAAATTGCACTTTTTTTTTTTTGATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTTTGAAGATTTTTGGGTTGAAAATTGAGCCAAAATTACT</canonical_amplicon>
		<polymorphic_amplicon>GTTTCTAGGCTCATTTTCTCAAAATTCCTCTTAAAAATTGAACATTTTCGACAATTTATGTTTTTTTGGTTAATTTTCAATCGAAAATCTTTGAATTTCATTGAAAAAACAACACCAAAGTYGACCCGAAATTGCACTTTTTTTTTTTTGATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTTTGAAGATTTTTGGGTTGAAAATTGAGCCAAAATTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb648</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>926013</contig_pos>
        <strand>+</strand>
        <context>AGGTTTTGAA[A/G]ATTTTTGGRT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTTTGAA</left_flank>
        <right_flank>ATTTTTGGGTTGAAAATTGAGCCAAAATTACTTTTTTTGAGCATTTCTAA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTTCGATAATTTATATTCTTTTAACTCATTTTCAATCGAAAATCTTGAAATTTCTTTGAAAAAACCACCAAATGTCACCCAAAATCCTTCAAATTGCTCTCCAAATTCTCCTAATTTAGGCTTGAAAATGGGGAATTTGACGATTTTTGGTTGAAAATGGACCCCGAATTTCGATTTTTGGCTAATTTGCGCATTTCTAGGCTCATTTTCAACCCAAAATTGCTCCAAAAATGCACTTTTCCAGATTTCCAGCATATTTTGATTTTTTCGCTTTCTCGAAAATGGGAAATTCGAGCGTTTCTAGGCTCATTTTCTCAAAATTCCTCTTAAAAATTGAACATTTTCGACAATTTATGTTTTTTTGGTTAATTTTCAATCGAAAATCTTTGAATTTCATTGAAAAAACAACACCAAAGTTGACCCGAAATTGCACTTTTTTTTTTTTGATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTTTGAAGATTTTTGGGTTGAAAATTGAGCCAAAATTACTTTTTTTGAGCATTTCTAAGCTCATTTTTCAGCCCAAAACCCTTCAAATTTTGAATAATTTTCACTTTTTGGCTCATTTTCTATCAAAAATCTTTAGATTTGAAAAAAAACCACCAAAATTACCCCCCCCCCCCCGAATTTTCAAAAATTTCGCTGGAAAAATAGGAAATTTGAAGATTTTTGAGTTGAAAATTAAGCCAAAATTGCTGTTTTGTCTAATTTGAGCACATTTCTTTGCTCATTTTTTAGCCCAAAATCCTTTAAATTCGGCTTGAAAAGTGCACTTTTTAGATGATTTTTGAAGATTTTGGGTTGAAAACTAGGCTAATATTCTGTTGAAACTACCAAAATTAACCCGAAAACCCTTCAAATTCATCTCGATATTCTCCAAATTTTGGCTCGAAATTAAGGAGTTTGAAGTTTTTAGGTTCGAAATTAAGCCGGAATTGCGTTTTTGAGCATTTCTGGG</canonical>
            <polymorphic>CTTTTTCGATAATTTATATTCTTTTAACTCATTTTCAATCGAAAATCTTGAAATTTCTTTGAAAAAACCACCAAATGTCACCCAAAATCCTTCAAATTGCTCTCCAAATTCTCCTAATTTAGGCTTGAAAATGGGGAATTTGACGATTTTTGGTTGAAAATGGACCCCGAATTTCGATTTTTGGCTAATTTGCGCATTTCTAGGCTCATTTTCAACCCAAAATTGCTCCAAAAATGCACTTTTCCAGATTTCCAGCATATTTTGATTTTTTCGCTTTCTCGAAAATGGGAAATTCGAGCGTTTCTAGGCTCATTTTCTCAAAATTCCTCTTAAAAATTGAACATTTTCGACAATTTATGTTTTTTTGGTTAATTTTCAATCGAAAATCTTTGAATTTCATTGAAAAAACAACACCAAAGTTGACCCGAAATTGCACTTTTTTTTTTTTGATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTTTGAARATTTTTGGGTTGAAAATTGAGCCAAAATTACTTTTTTTGAGCATTTCTAAGCTCATTTTTCAGCCCAAAACCCTTCAAATTTTGAATAATTTTCACTTTTTGGCTCATTTTCTATCAAAAATCTTTAGATTTGAAAAAAAACCACCAAAATTACCCCCCCCCCCCCGAATTTTCAAAAATTTCGCTGGAAAAATAGGAAATTTGAAGATTTTTGAGTTGAAAATTAAGCCAAAATTGCTGTTTTGTCTAATTTGAGCACATTTCTTTGCTCATTTTTTAGCCCAAAATCCTTTAAATTCGGCTTGAAAAGTGCACTTTTTAGATGATTTTTGAAGATTTTGGGTTGAAAACTAGGCTAATATTCTGTTGAAACTACCAAAATTAACCCGAAAACCCTTCAAATTCATCTCGATATTCTCCAAATTTTGGCTCGAAATTAAGGAGTTTGAAGTTTTTAGGTTCGAAATTAAGCCGGAATTGCGTTTTTGAGCATTTCTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGAAAATCTTTGAATTTCATT</pcr_primer_p1>
		<pcr_primer_p2>ATAGAAAATGAGCCAAAAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TCGAAAATCTTTGAATTTCATTGAAAAAACAACACCAAAGTTGACCCGAAATTGCACTTTTTTTTTTTTGATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTTTGAAGATTTTTGGGTTGAAAATTGAGCCAAAATTACTTTTTTTGAGCATTTCTAAGCTCATTTTTCAGCCCAAAACCCTTCAAATTTTGAATAATTTTCACTTTTTGGCTCATTTTCTAT</canonical_amplicon>
		<polymorphic_amplicon>TCGAAAATCTTTGAATTTCATTGAAAAAACAACACCAAAGTTGACCCGAAATTGCACTTTTTTTTTTTTGATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTTTGAARATTTTTGGGTTGAAAATTGAGCCAAAATTACTTTTTTTGAGCATTTCTAAGCTCATTTTTCAGCCCAAAACCCTTCAAATTTTGAATAATTTTCACTTTTTGGCTCATTTTCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb649</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>926022</contig_pos>
        <strand>+</strand>
        <context>ARATTTTTGG[A/G]TTGAAAATTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTTTGAAGATTTTTGG</left_flank>
        <right_flank>TTGAAAATTGAGCCAAAATTACTTTTTTTGAGCATTTCTAAGCTCATTTT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTTATATTCTTTTAACTCATTTTCAATCGAAAATCTTGAAATTTCTTTGAAAAAACCACCAAATGTCACCCAAAATCCTTCAAATTGCTCTCCAAATTCTCCTAATTTAGGCTTGAAAATGGGGAATTTGACGATTTTTGGTTGAAAATGGACCCCGAATTTCGATTTTTGGCTAATTTGCGCATTTCTAGGCTCATTTTCAACCCAAAATTGCTCCAAAAATGCACTTTTCCAGATTTCCAGCATATTTTGATTTTTTCGCTTTCTCGAAAATGGGAAATTCGAGCGTTTCTAGGCTCATTTTCTCAAAATTCCTCTTAAAAATTGAACATTTTCGACAATTTATGTTTTTTTGGTTAATTTTCAATCGAAAATCTTTGAATTTCATTGAAAAAACAACACCAAAGTTGACCCGAAATTGCACTTTTTTTTTTTTGATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTTTGAAGATTTTTGGGTTGAAAATTGAGCCAAAATTACTTTTTTTGAGCATTTCTAAGCTCATTTTTCAGCCCAAAACCCTTCAAATTTTGAATAATTTTCACTTTTTGGCTCATTTTCTATCAAAAATCTTTAGATTTGAAAAAAAACCACCAAAATTACCCCCCCCCCCCCGAATTTTCAAAAATTTCGCTGGAAAAATAGGAAATTTGAAGATTTTTGAGTTGAAAATTAAGCCAAAATTGCTGTTTTGTCTAATTTGAGCACATTTCTTTGCTCATTTTTTAGCCCAAAATCCTTTAAATTCGGCTTGAAAAGTGCACTTTTTAGATGATTTTTGAAGATTTTGGGTTGAAAACTAGGCTAATATTCTGTTGAAACTACCAAAATTAACCCGAAAACCCTTCAAATTCATCTCGATATTCTCCAAATTTTGGCTCGAAATTAAGGAGTTTGAAGTTTTTAGGTTCGAAATTAAGCCGGAATTGCGTTTTTGAGCATTTCTGGGCTCGTTTTC</canonical>
            <polymorphic>TAATTTATATTCTTTTAACTCATTTTCAATCGAAAATCTTGAAATTTCTTTGAAAAAACCACCAAATGTCACCCAAAATCCTTCAAATTGCTCTCCAAATTCTCCTAATTTAGGCTTGAAAATGGGGAATTTGACGATTTTTGGTTGAAAATGGACCCCGAATTTCGATTTTTGGCTAATTTGCGCATTTCTAGGCTCATTTTCAACCCAAAATTGCTCCAAAAATGCACTTTTCCAGATTTCCAGCATATTTTGATTTTTTCGCTTTCTCGAAAATGGGAAATTCGAGCGTTTCTAGGCTCATTTTCTCAAAATTCCTCTTAAAAATTGAACATTTTCGACAATTTATGTTTTTTTGGTTAATTTTCAATCGAAAATCTTTGAATTTCATTGAAAAAACAACACCAAAGTTGACCCGAAATTGCACTTTTTTTTTTTTGATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTTTGAAGATTTTTGGRTTGAAAATTGAGCCAAAATTACTTTTTTTGAGCATTTCTAAGCTCATTTTTCAGCCCAAAACCCTTCAAATTTTGAATAATTTTCACTTTTTGGCTCATTTTCTATCAAAAATCTTTAGATTTGAAAAAAAACCACCAAAATTACCCCCCCCCCCCCGAATTTTCAAAAATTTCGCTGGAAAAATAGGAAATTTGAAGATTTTTGAGTTGAAAATTAAGCCAAAATTGCTGTTTTGTCTAATTTGAGCACATTTCTTTGCTCATTTTTTAGCCCAAAATCCTTTAAATTCGGCTTGAAAAGTGCACTTTTTAGATGATTTTTGAAGATTTTGGGTTGAAAACTAGGCTAATATTCTGTTGAAACTACCAAAATTAACCCGAAAACCCTTCAAATTCATCTCGATATTCTCCAAATTTTGGCTCGAAATTAAGGAGTTTGAAGTTTTTAGGTTCGAAATTAAGCCGGAATTGCGTTTTTGAGCATTTCTGGGCTCGTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGAAAATCTTTGAATTTCATT</pcr_primer_p1>
		<pcr_primer_p2>ATAGAAAATGAGCCAAAAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TCGAAAATCTTTGAATTTCATTGAAAAAACAACACCAAAGTTGACCCGAAATTGCACTTTTTTTTTTTTGATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTTTGAAGATTTTTGGGTTGAAAATTGAGCCAAAATTACTTTTTTTGAGCATTTCTAAGCTCATTTTTCAGCCCAAAACCCTTCAAATTTTGAATAATTTTCACTTTTTGGCTCATTTTCTAT</canonical_amplicon>
		<polymorphic_amplicon>TCGAAAATCTTTGAATTTCATTGAAAAAACAACACCAAAGTTGACCCGAAATTGCACTTTTTTTTTTTTGATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTTTGAAGATTTTTGGRTTGAAAATTGAGCCAAAATTACTTTTTTTGAGCATTTCTAAGCTCATTTTTCAGCCCAAAACCCTTCAAATTTTGAATAATTTTCACTTTTTGGCTCATTTTCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb650</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>926062</contig_pos>
        <strand>+</strand>
        <context>GAGCATTTCT[A/G]AGCTCATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGATTTTTGGGTTGAAAATTGAGCCAAAATTACTTTTTTTGAGCATTTCT</left_flank>
        <right_flank>AGCTCATTTTTCAGCCCAAAACCCTTCAAATTTTGAATAATTTTCACTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATTTCTTTGAAAAAACCACCAAATGTCACCCAAAATCCTTCAAATTGCTCTCCAAATTCTCCTAATTTAGGCTTGAAAATGGGGAATTTGACGATTTTTGGTTGAAAATGGACCCCGAATTTCGATTTTTGGCTAATTTGCGCATTTCTAGGCTCATTTTCAACCCAAAATTGCTCCAAAAATGCACTTTTCCAGATTTCCAGCATATTTTGATTTTTTCGCTTTCTCGAAAATGGGAAATTCGAGCGTTTCTAGGCTCATTTTCTCAAAATTCCTCTTAAAAATTGAACATTTTCGACAATTTATGTTTTTTTGGTTAATTTTCAATCGAAAATCTTTGAATTTCATTGAAAAAACAACACCAAAGTTGACCCGAAATTGCACTTTTTTTTTTTTGATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTTTGAAGATTTTTGGGTTGAAAATTGAGCCAAAATTACTTTTTTTGAGCATTTCTAAGCTCATTTTTCAGCCCAAAACCCTTCAAATTTTGAATAATTTTCACTTTTTGGCTCATTTTCTATCAAAAATCTTTAGATTTGAAAAAAAACCACCAAAATTACCCCCCCCCCCCCGAATTTTCAAAAATTTCGCTGGAAAAATAGGAAATTTGAAGATTTTTGAGTTGAAAATTAAGCCAAAATTGCTGTTTTGTCTAATTTGAGCACATTTCTTTGCTCATTTTTTAGCCCAAAATCCTTTAAATTCGGCTTGAAAAGTGCACTTTTTAGATGATTTTTGAAGATTTTGGGTTGAAAACTAGGCTAATATTCTGTTGAAACTACCAAAATTAACCCGAAAACCCTTCAAATTCATCTCGATATTCTCCAAATTTTGGCTCGAAATTAAGGAGTTTGAAGTTTTTAGGTTCGAAATTAAGCCGGAATTGCGTTTTTGAGCATTTCTGGGCTCGTTTTCAGCTCAAAGTCGTTCAAATTCCTCTCCAAAAGTGCATTTT</canonical>
            <polymorphic>GAAATTTCTTTGAAAAAACCACCAAATGTCACCCAAAATCCTTCAAATTGCTCTCCAAATTCTCCTAATTTAGGCTTGAAAATGGGGAATTTGACGATTTTTGGTTGAAAATGGACCCCGAATTTCGATTTTTGGCTAATTTGCGCATTTCTAGGCTCATTTTCAACCCAAAATTGCTCCAAAAATGCACTTTTCCAGATTTCCAGCATATTTTGATTTTTTCGCTTTCTCGAAAATGGGAAATTCGAGCGTTTCTAGGCTCATTTTCTCAAAATTCCTCTTAAAAATTGAACATTTTCGACAATTTATGTTTTTTTGGTTAATTTTCAATCGAAAATCTTTGAATTTCATTGAAAAAACAACACCAAAGTTGACCCGAAATTGCACTTTTTTTTTTTTGATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTTTGAAGATTTTTGGGTTGAAAATTGAGCCAAAATTACTTTTTTTGAGCATTTCTRAGCTCATTTTTCAGCCCAAAACCCTTCAAATTTTGAATAATTTTCACTTTTTGGCTCATTTTCTATCAAAAATCTTTAGATTTGAAAAAAAACCACCAAAATTACCCCCCCCCCCCCGAATTTTCAAAAATTTCGCTGGAAAAATAGGAAATTTGAAGATTTTTGAGTTGAAAATTAAGCCAAAATTGCTGTTTTGTCTAATTTGAGCACATTTCTTTGCTCATTTTTTAGCCCAAAATCCTTTAAATTCGGCTTGAAAAGTGCACTTTTTAGATGATTTTTGAAGATTTTGGGTTGAAAACTAGGCTAATATTCTGTTGAAACTACCAAAATTAACCCGAAAACCCTTCAAATTCATCTCGATATTCTCCAAATTTTGGCTCGAAATTAAGGAGTTTGAAGTTTTTAGGTTCGAAATTAAGCCGGAATTGCGTTTTTGAGCATTTCTGGGCTCGTTTTCAGCTCAAAGTCGTTCAAATTCCTCTCCAAAAGTGCATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGAAAATCTTTGAATTTCATT</pcr_primer_p1>
		<pcr_primer_p2>ATAGAAAATGAGCCAAAAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TCGAAAATCTTTGAATTTCATTGAAAAAACAACACCAAAGTTGACCCGAAATTGCACTTTTTTTTTTTTGATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTTTGAAGATTTTTGGGTTGAAAATTGAGCCAAAATTACTTTTTTTGAGCATTTCTAAGCTCATTTTTCAGCCCAAAACCCTTCAAATTTTGAATAATTTTCACTTTTTGGCTCATTTTCTAT</canonical_amplicon>
		<polymorphic_amplicon>TCGAAAATCTTTGAATTTCATTGAAAAAACAACACCAAAGTTGACCCGAAATTGCACTTTTTTTTTTTTGATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTTTGAAGATTTTTGGGTTGAAAATTGAGCCAAAATTACTTTTTTTGAGCATTTCTRAGCTCATTTTTCAGCCCAAAACCCTTCAAATTTTGAATAATTTTCACTTTTTGGCTCATTTTCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb651</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>926291</contig_pos>
        <strand>+</strand>
        <context>GCTCATTTTT[A/T]AGCCCAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCCAAAATTGCTGTTTTGTCTAATTTGAGCACATTTCTTTGCTCATTTTT</left_flank>
        <right_flank>AGCCCAAAATCCTTTAAATTCGGCTTGAAAAGTGCACTTTTTAGATGATT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGAAAATGGGAAATTCGAGCGTTTCTAGGCTCATTTTCTCAAAATTCCTCTTAAAAATTGAACATTTTCGACAATTTATGTTTTTTTGGTTAATTTTCAATCGAAAATCTTTGAATTTCATTGAAAAAACAACACCAAAGTTGACCCGAAATTGCACTTTTTTTTTTTTGATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTTTGAAGATTTTTGGGTTGAAAATTGAGCCAAAATTACTTTTTTTGAGCATTTCTAAGCTCATTTTTCAGCCCAAAACCCTTCAAATTTTGAATAATTTTCACTTTTTGGCTCATTTTCTATCAAAAATCTTTAGATTTGAAAAAAAACCACCAAAATTACCCCCCCCCCCCCGAATTTTCAAAAATTTCGCTGGAAAAATAGGAAATTTGAAGATTTTTGAGTTGAAAATTAAGCCAAAATTGCTGTTTTGTCTAATTTGAGCACATTTCTTTGCTCATTTTTTAGCCCAAAATCCTTTAAATTCGGCTTGAAAAGTGCACTTTTTAGATGATTTTTGAAGATTTTGGGTTGAAAACTAGGCTAATATTCTGTTGAAACTACCAAAATTAACCCGAAAACCCTTCAAATTCATCTCGATATTCTCCAAATTTTGGCTCGAAATTAAGGAGTTTGAAGTTTTTAGGTTCGAAATTAAGCCGGAATTGCGTTTTTGAGCATTTCTGGGCTCGTTTTCAGCTCAAAGTCGTTCAAATTCCTCTCCAAAAGTGCATTTTTCCAATTTTCAGCAATTTTCATAATTTTCGCTGGCTCGAAATGACGGATTTTGAAGATTTTTGGCTGATTTGAGCGGTTCTGTGCATTTTTGACCAAAAAATGTTCAAATTCCTCTTAAATGATCTCCGCTACTCTTTCAAATTGCTGCTTTTAATTGCTCTCTCTCTCTCTCTCTCTTTCCCCCCAATTATCTCAAAAAAAAAACAATACCCGCTTTCAAATGTACCA</canonical>
            <polymorphic>TCGAAAATGGGAAATTCGAGCGTTTCTAGGCTCATTTTCTCAAAATTCCTCTTAAAAATTGAACATTTTCGACAATTTATGTTTTTTTGGTTAATTTTCAATCGAAAATCTTTGAATTTCATTGAAAAAACAACACCAAAGTTGACCCGAAATTGCACTTTTTTTTTTTTGATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTTTGAAGATTTTTGGGTTGAAAATTGAGCCAAAATTACTTTTTTTGAGCATTTCTAAGCTCATTTTTCAGCCCAAAACCCTTCAAATTTTGAATAATTTTCACTTTTTGGCTCATTTTCTATCAAAAATCTTTAGATTTGAAAAAAAACCACCAAAATTACCCCCCCCCCCCCGAATTTTCAAAAATTTCGCTGGAAAAATAGGAAATTTGAAGATTTTTGAGTTGAAAATTAAGCCAAAATTGCTGTTTTGTCTAATTTGAGCACATTTCTTTGCTCATTTTTWAGCCCAAAATCCTTTAAATTCGGCTTGAAAAGTGCACTTTTTAGATGATTTTTGAAGATTTTGGGTTGAAAACTAGGCTAATATTCTGTTGAAACTACCAAAATTAACCCGAAAACCCTTCAAATTCATCTCGATATTCTCCAAATTTTGGCTCGAAATTAAGGAGTTTGAAGTTTTTAGGTTCGAAATTAAGCCGGAATTGCGTTTTTGAGCATTTCTGGGCTCGTTTTCAGCTCAAAGTCGTTCAAATTCCTCTCCAAAAGTGCATTTTTCCAATTTTCAGCAATTTTCATAATTTTCGCTGGCTCGAAATGACGGATTTTGAAGATTTTTGGCTGATTTGAGCGGTTCTGTGCATTTTTGACCAAAAAATGTTCAAATTCCTCTTAAATGATCTCCGCTACTCTTTCAAATTGCTGCTTTTAATTGCTCTCTCTCTCTCTCTCTCTTTCCCCCCAATTATCTCAAAAAAAAAACAATACCCGCTTTCAAATGTACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTTTTTGGCTCATTTTCTAT</pcr_primer_p1>
		<pcr_primer_p2>CCAAAATCTTCAAAAATCATCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CACTTTTTGGCTCATTTTCTATCAAAAATCTTTAGATTTGAAAAAAAACCACCAAAATTACCCCCCCCCCCCCGAATTTTCAAAAATTTCGCTGGAAAAATAGGAAATTTGAAGATTTTTGAGTTGAAAATTAAGCCAAAATTGCTGTTTTGTCTAATTTGAGCACATTTCTTTGCTCATTTTTTAGCCCAAAATCCTTTAAATTCGGCTTGAAAAGTGCACTTTTTAGATGATTTTTGAAGATTTTGG</canonical_amplicon>
		<polymorphic_amplicon>CACTTTTTGGCTCATTTTCTATCAAAAATCTTTAGATTTGAAAAAAAACCACCAAAATTACCCCCCCCCCCCCGAATTTTCAAAAATTTCGCTGGAAAAATAGGAAATTTGAAGATTTTTGAGTTGAAAATTAAGCCAAAATTGCTGTTTTGTCTAATTTGAGCACATTTCTTTGCTCATTTTTWAGCCCAAAATCCTTTAAATTCGGCTTGAAAAGTGCACTTTTTAGATGATTTTTGAAGATTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb652</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>926389</contig_pos>
        <strand>+</strand>
        <context>GTTGAAACTA[C/G]CAAAATKAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTTTTGAAGATTTTGGGTTGAAAACTAGGCTAATATTCTGTTGAAACTA</left_flank>
        <right_flank>CAAAATTAACCCGAAAACCCTTCAAATTCATCTCGATATTCTCCAAATTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATCGAAAATCTTTGAATTTCATTGAAAAAACAACACCAAAGTTGACCCGAAATTGCACTTTTTTTTTTTTGATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTTTGAAGATTTTTGGGTTGAAAATTGAGCCAAAATTACTTTTTTTGAGCATTTCTAAGCTCATTTTTCAGCCCAAAACCCTTCAAATTTTGAATAATTTTCACTTTTTGGCTCATTTTCTATCAAAAATCTTTAGATTTGAAAAAAAACCACCAAAATTACCCCCCCCCCCCCGAATTTTCAAAAATTTCGCTGGAAAAATAGGAAATTTGAAGATTTTTGAGTTGAAAATTAAGCCAAAATTGCTGTTTTGTCTAATTTGAGCACATTTCTTTGCTCATTTTTTAGCCCAAAATCCTTTAAATTCGGCTTGAAAAGTGCACTTTTTAGATGATTTTTGAAGATTTTGGGTTGAAAACTAGGCTAATATTCTGTTGAAACTACCAAAATTAACCCGAAAACCCTTCAAATTCATCTCGATATTCTCCAAATTTTGGCTCGAAATTAAGGAGTTTGAAGTTTTTAGGTTCGAAATTAAGCCGGAATTGCGTTTTTGAGCATTTCTGGGCTCGTTTTCAGCTCAAAGTCGTTCAAATTCCTCTCCAAAAGTGCATTTTTCCAATTTTCAGCAATTTTCATAATTTTCGCTGGCTCGAAATGACGGATTTTGAAGATTTTTGGCTGATTTGAGCGGTTCTGTGCATTTTTGACCAAAAAATGTTCAAATTCCTCTTAAATGATCTCCGCTACTCTTTCAAATTGCTGCTTTTAATTGCTCTCTCTCTCTCTCTCTCTTTCCCCCCAATTATCTCAAAAAAAAAACAATACCCGCTTTCAAATGTACCAACGAAATGTGCAATCTTTTTTCCCAATTTGGCACTTTTTCTTCTGTAATTTGGATCTCCCTCTTAATTACCCCCTCTCAATTATCCCCTATCCCCTGA</canonical>
            <polymorphic>CAATCGAAAATCTTTGAATTTCATTGAAAAAACAACACCAAAGTTGACCCGAAATTGCACTTTTTTTTTTTTGATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTTTGAAGATTTTTGGGTTGAAAATTGAGCCAAAATTACTTTTTTTGAGCATTTCTAAGCTCATTTTTCAGCCCAAAACCCTTCAAATTTTGAATAATTTTCACTTTTTGGCTCATTTTCTATCAAAAATCTTTAGATTTGAAAAAAAACCACCAAAATTACCCCCCCCCCCCCGAATTTTCAAAAATTTCGCTGGAAAAATAGGAAATTTGAAGATTTTTGAGTTGAAAATTAAGCCAAAATTGCTGTTTTGTCTAATTTGAGCACATTTCTTTGCTCATTTTTTAGCCCAAAATCCTTTAAATTCGGCTTGAAAAGTGCACTTTTTAGATGATTTTTGAAGATTTTGGGTTGAAAACTAGGCTAATATTCTGTTGAAACTASCAAAATTAACCCGAAAACCCTTCAAATTCATCTCGATATTCTCCAAATTTTGGCTCGAAATTAAGGAGTTTGAAGTTTTTAGGTTCGAAATTAAGCCGGAATTGCGTTTTTGAGCATTTCTGGGCTCGTTTTCAGCTCAAAGTCGTTCAAATTCCTCTCCAAAAGTGCATTTTTCCAATTTTCAGCAATTTTCATAATTTTCGCTGGCTCGAAATGACGGATTTTGAAGATTTTTGGCTGATTTGAGCGGTTCTGTGCATTTTTGACCAAAAAATGTTCAAATTCCTCTTAAATGATCTCCGCTACTCTTTCAAATTGCTGCTTTTAATTGCTCTCTCTCTCTCTCTCTCTTTCCCCCCAATTATCTCAAAAAAAAAACAATACCCGCTTTCAAATGTACCAACGAAATGTGCAATCTTTTTTCCCAATTTGGCACTTTTTCTTCTGTAATTTGGATCTCCCTCTTAATTACCCCCTCTCAATTATCCCCTATCCCCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTTGAAAATTAAGCCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GAACCTAAAAACTTCAAACTCCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAGTTGAAAATTAAGCCAAAATTGCTGTTTTGTCTAATTTGAGCACATTTCTTTGCTCATTTTTTAGCCCAAAATCCTTTAAATTCGGCTTGAAAAGTGCACTTTTTAGATGATTTTTGAAGATTTTGGGTTGAAAACTAGGCTAATATTCTGTTGAAACTACCAAAATTAACCCGAAAACCCTTCAAATTCATCTCGATATTCTCCAAATTTTGGCTCGAAATTAAGGAGTTTGAAGTTTTTAGGTTC</canonical_amplicon>
		<polymorphic_amplicon>GAGTTGAAAATTAAGCCAAAATTGCTGTTTTGTCTAATTTGAGCACATTTCTTTGCTCATTTTTTAGCCCAAAATCCTTTAAATTCGGCTTGAAAAGTGCACTTTTTAGATGATTTTTGAAGATTTTGGGTTGAAAACTAGGCTAATATTCTGTTGAAACTASCAAAATTAACCCGAAAACCCTTCAAATTCATCTCGATATTCTCCAAATTTTGGCTCGAAATTAAGGAGTTTGAAGTTTTTAGGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb653</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>929932</contig_pos>
        <strand></strand>
        <context>ATGATCCGGT[A/T]GGTgcagttc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGCTTAAATATCAACCGGAGACTATTCTGACACTGGCTAATGATCCGGT</left_flank>
        <right_flank>GGTGCAGTTCTAGAACGGCAGAGTTCTAAAACGTCCCAGTTCTAGAATGT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTGGTTCAAAAGAAGAATGCTGGAAAAAAACTAAGAAAAAATCGAAAATTGAAACACAATTTTTTTCGAAATTTCACAAATTTTCAGAAATTTCGAAGTTGTCCAATCGCGATAAAAATTGATGTCACGAGCTGAAATGAGCGGAAAATAGAAATACTGAAAAAAATTTTCGAAAAAATCGAAATTTGAACAAAAAAATTTATTGAAAAATTCCCAAAAAAAATTTTTTTCCAAATATCGATTTTTTCTAAGTTTTTTTTTCAGTATTCCCATTTTCAGCCAAATTCAGCTCGTGATATCAATTTTTATCGCAATTGGACAATTTTGAATTTTTGGAAAAATTTGAATTCCAGGTTGATGACGTCATCGAGTTGTTGTACAAATTGAGGCACAGTGTGAAGGCTGCTGAGAAGTTGGAGTCTAGCGAGTACGCTCTGGTTCGGCTGTTGCTTAAATATCAACCGGAGACTATTCTGACACTGGCTAATGATCCGGTAGGTGCAGTTCTAGAACGGCAGAGTTCTAAAACGTCCCAGTTCTAGAATGTCATGAATTTCAGATCAACTACGGTGTCTTTTTGAATCCCCATCTCGCCTGTATCGTCATCGATCACTTTATCAGAACATCGAACATCCAAGCGGCCGCCCGAATCGTCACGTGGATGGTCCAGCAGGAGGAGCTGGATAATGAGCTTTTAAACGTCCTTGGAATGTATGTATGTGCAAAGTGGGCGGAGCTTCCAGCCGATCAGCAGACACTCGATTTAGGAGCAGTTGAGGAGGAAGAAGACGTCAATGATGACGATATTGTGGGTTTTTTGGGAATTTTATCTAAAAATTCAAAATCGTCCAATTGCGATAAAAATCGATACCACGAGCTGAAATGGGCTGAAAATGAGAATACTGAGAACAATTTTCGAAAAAATCAAAATTGGAAAAAAATTTTTTTTGGAATTTTTCAAAAAAAAATTTTTTTCAAATTTCGACTTTTTTCGAAA</canonical>
            <polymorphic>AAATTGGTTCAAAAGAAGAATGCTGGAAAAAAACTAAGAAAAAATCGAAAATTGAAACACAATTTTTTTCGAAATTTCACAAATTTTCAGAAATTTCGAAGTTGTCCAATCGCGATAAAAATTGATGTCACGAGCTGAAATGAGCGGAAAATAGAAATACTGAAAAAAATTTTCGAAAAAATCGAAATTTGAACAAAAAAATTTATTGAAAAATTCCCAAAAAAAATTTTTTTCCAAATATCGATTTTTTCTAAGTTTTTTTTTCAGTATTCCCATTTTCAGCCAAATTCAGCTCGTGATATCAATTTTTATCGCAATTGGACAATTTTGAATTTTTGGAAAAATTTGAATTCCAGGTTGATGACGTCATCGAGTTGTTGTACAAATTGAGGCACAGTGTGAAGGCTGCTGAGAAGTTGGAGTCTAGCGAGTACGCTCTGGTTCGGCTGTTGCTTAAATATCAACCGGAGACTATTCTGACACTGGCTAATGATCCGGTWGGTGCAGTTCTAGAACGGCAGAGTTCTAAAACGTCCCAGTTCTAGAATGTCATGAATTTCAGATCAACTACGGTGTCTTTTTGAATCCCCATCTCGCCTGTATCGTCATCGATCACTTTATCAGAACATCGAACATCCAAGCGGCCGCCCGAATCGTCACGTGGATGGTCCAGCAGGAGGAGCTGGATAATGAGCTTTTAAACGTCCTTGGAATGTATGTATGTGCAAAGTGGGCGGAGCTTCCAGCCGATCAGCAGACACTCGATTTAGGAGCAGTTGAGGAGGAAGAAGACGTCAATGATGACGATATTGTGGGTTTTTTGGGAATTTTATCTAAAAATTCAAAATCGTCCAATTGCGATAAAAATCGATACCACGAGCTGAAATGGGCTGAAAATGAGAATACTGAGAACAATTTTCGAAAAAATCAAAATTGGAAAAAAATTTTTTTTGGAATTTTTCAAAAAAAAATTTTTTTCAAATTTCGACTTTTTTCGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGAGTTGTTGTACAAATTGAG</pcr_primer_p1>
		<pcr_primer_p2>AAGTGATCGATGACGATACAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCGAGTTGTTGTACAAATTGAGGCACAGTGTGAAGGCTGCTGAGAAGTTGGAGTCTAGCGAGTACGCTCTGGTTCGGCTGTTGCTTAAATATCAACCGGAGACTATTCTGACACTGGCTAATGATCCGGTAGGTGCAGTTCTAGAACGGCAGAGTTCTAAAACGTCCCAGTTCTAGAATGTCATGAATTTCAGATCAACTACGGTGTCTTTTTGAATCCCCATCTCGCCTGTATCGTCATCGATCACTT</canonical_amplicon>
		<polymorphic_amplicon>TCGAGTTGTTGTACAAATTGAGGCACAGTGTGAAGGCTGCTGAGAAGTTGGAGTCTAGCGAGTACGCTCTGGTTCGGCTGTTGCTTAAATATCAACCGGAGACTATTCTGACACTGGCTAATGATCCGGTWGGTGCAGTTCTAGAACGGCAGAGTTCTAAAACGTCCCAGTTCTAGAATGTCATGAATTTCAGATCAACTACGGTGTCTTTTTGAATCCCCATCTCGCCTGTATCGTCATCGATCACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb678</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>952891</contig_pos>
        <strand>+</strand>
        <context>CCAGCCTCTG[A/G]TCCAGGAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGGTCGGACGGTCCAGACCTTTATCATCAGCCCCATGATCCAGCCTCTG</left_flank>
        <right_flank>TCCAGGAGAATTTAGCTAGAAATAAAGGAGGACCTGCACATCTAACTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTAGAGAATTCTAGGCCAAGGACTATAGATCGATCTTGGTTTATTGTTCATAGCTAGGGACCTAGCTGAGTAATAGGCTCAGAGCTAGCTAGCCTAGAACATAGCTGACATTGCTGACCTAGACCATAGCTGACATAGCTGGCCTAGACCATAGCTGACATTGCTGACCCAGACCATACCTGACATAGCTGGCCTAGACCATAGCTGACATTGCTGACATAGCTGACCTAGACCATAGCTGACATAGCTGACCTAGATCATAGCTGACCTGGACCATAGCTGACATAGCTGGCCTAGATCATAGCTGACATAGCTGACCTGGACCATAGCTGACACAGCTGACCTGAACCATGGCTGACATAGCTGACCTAGACCATAGCTGACATAGCTGACATAACTGACCTAGACCATAGCTGACATAGCTGGCCAATAGGCTCAAGAATCTAGCGGGTCGGACGGTCCAGACCTTTATCATCAGCCCCATGATCCAGCCTCTGGTCCAGGAGAATTTAGCTAGAAATAAAGGAGGACCTGCACATCTAACTTTACTATATTCCTAACTAGACGGAGAAGTTCGATTTTTGACAGAAACTTTTGTCAAAATTGACCTAGAGAAATGAAAATTAGATCAAAATGATCAGCAAAGTGCGAGGAATCGTTTGCAATTTGATTCTTAGTTTCAGCCNNNNNNNNNNAAACTAAGAATCAAATTGCAAACGATTACTGACATTTTGCTGCTCATTTTGATCTAATTTTTAGTTCTCTGGGCCAATTTTGACAAAAGTTAATGTAAAAAATCGAACTTCTCCGTCTAGTTAGGAATATAGTAAAGTTAGATGTGCAGGTCCTCCTTTATTTCTAGCTAAATTCTCCTGGACCAGAGGCTGGATCATGGGGCTGATGATAAAGGTCTGGACCGTCCGACCCGTTCCCAACCATTTAACTTTGAACTCAATTATCTCGATTTCAGTGAGAGATATCAAAAATTTGTCAACTGA</canonical>
            <polymorphic>TTGTAGAGAATTCTAGGCCAAGGACTATAGATCGATCTTGGTTTATTGTTCATAGCTAGGGACCTAGCTGAGTAATAGGCTCAGAGCTAGCTAGCCTAGAACATAGCTGACATTGCTGACCTAGACCATAGCTGACATAGCTGGCCTAGACCATAGCTGACATTGCTGACCCAGACCATACCTGACATAGCTGGCCTAGACCATAGCTGACATTGCTGACATAGCTGACCTAGACCATAGCTGACATAGCTGACCTAGATCATAGCTGACCTGGACCATAGCTGACATAGCTGGCCTAGATCATAGCTGACATAGCTGACCTGGACCATAGCTGACACAGCTGACCTGAACCATGGCTGACATAGCTGACCTAGACCATAGCTGACATAGCTGACATAACTGACCTAGACCATAGCTGACATAGCTGGCCAATAGGCTCAAGAATCTAGCGGGTCGGACGGTCCAGACCTTTATCATCAGCCCCATGATCCAGCCTCTGRTCCAGGAGAATTTAGCTAGAAATAAAGGAGGACCTGCACATCTAACTTTACTATATTCCTAACTAGACGGAGAAGTTCGATTTTTGACAGAAACTTTTGTCAAAATTGACCTAGAGAAATGAAAATTAGATCAAAATGATCAGCAAAGTGCGAGGAATCGTTTGCAATTTGATTCTTAGTTTCAGCCNNNNNNNNNNAAACTAAGAATCAAATTGCAAACGATTACTGACATTTTGCTGCTCATTTTGATCTAATTTTTAGTTCTCTGGGCCAATTTTGACAAAAGTTAATGTAAAAAATCGAACTTCTCCGTCTAGTTAGGAATATAGTAAAGTTAGATGTGCAGGTCCTCCTTTATTTCTAGCTAAATTCTCCTGGACCAGAGGCTGGATCATGGGGCTGATGATAAAGGTCTGGACCGTCCGACCCGTTCCCAACCATTTAACTTTGAACTCAATTATCTCGATTTCAGTGAGAGATATCAAAAATTTGTCAACTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNTGG</site>
                <isoschizomers>
                    <enzyme>AccB7I</enzyme>
                    <enzyme>PflBI</enzyme>
                    <enzyme>PflMI</enzyme>
                    <enzyme>Van91I</enzyme>
                </isoschizomers>
                <canonical_bands>496 390 114</canonical_bands>
                <polymorphic_bands>886 114</polymorphic_bands>
            </assay>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>316 213 137 84 60 50 39 39 31 31</canonical_bands>
                <polymorphic_bands>316 213 137 84 70 60 50 39 31</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>238 213 137 84 78 60 50 39 39 31 31</canonical_bands>
                <polymorphic_bands>238 213 137 84 78 70 60 50 39 31</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>496 390 114</canonical_bands>
                <polymorphic_bands>886 114</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAGCTGACATTGCTGACCT</pcr_primer_p1>
		<pcr_primer_p2>AACTTCTCCGTCTAGTTAGGAATA</pcr_primer_p2>
		<pcr_amplicon_size>475</pcr_amplicon_size>
		<canonical_amplicon>ATAGCTGACATTGCTGACCTAGACCATAGCTGACATAGCTGGCCTAGACCATAGCTGACATTGCTGACCCAGACCATACCTGACATAGCTGGCCTAGACCATAGCTGACATTGCTGACATAGCTGACCTAGACCATAGCTGACATAGCTGACCTAGATCATAGCTGACCTGGACCATAGCTGACATAGCTGGCCTAGATCATAGCTGACATAGCTGACCTGGACCATAGCTGACACAGCTGACCTGAACCATGGCTGACATAGCTGACCTAGACCATAGCTGACATAGCTGACATAACTGACCTAGACCATAGCTGACATAGCTGGCCAATAGGCTCAAGAATCTAGCGGGTCGGACGGTCCAGACCTTTATCATCAGCCCCATGATCCAGCCTCTGGTCCAGGAGAATTTAGCTAGAAATAAAGGAGGACCTGCACATCTAACTTTACTATATTCCTAACTAGACGGAGAAGTT</canonical_amplicon>
		<polymorphic_amplicon>ATAGCTGACATTGCTGACCTAGACCATAGCTGACATAGCTGGCCTAGACCATAGCTGACATTGCTGACCCAGACCATACCTGACATAGCTGGCCTAGACCATAGCTGACATTGCTGACATAGCTGACCTAGACCATAGCTGACATAGCTGACCTAGATCATAGCTGACCTGGACCATAGCTGACATAGCTGGCCTAGATCATAGCTGACATAGCTGACCTGGACCATAGCTGACACAGCTGACCTGAACCATGGCTGACATAGCTGACCTAGACCATAGCTGACATAGCTGACATAACTGACCTAGACCATAGCTGACATAGCTGGCCAATAGGCTCAAGAATCTAGCGGGTCGGACGGTCCAGACCTTTATCATCAGCCCCATGATCCAGCCTCTGRTCCAGGAGAATTTAGCTAGAAATAAAGGAGGACCTGCACATCTAACTTTACTATATTCCTAACTAGACGGAGAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb679</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>952943</contig_pos>
        <strand>+</strand>
        <context>CTAACTTTAC[C/T]ATATTCCTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAGGAGAATTTAGCTAGAAATAAAGGAGGACCTGCACATCTAACTTTAC</left_flank>
        <right_flank>ATATTCCTAACTAGACGGAGAAGTTCGATTTTTGACAGAAACTTTTGTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGCTAGGGACCTAGCTGAGTAATAGGCTCAGAGCTAGCTAGCCTAGAACATAGCTGACATTGCTGACCTAGACCATAGCTGACATAGCTGGCCTAGACCATAGCTGACATTGCTGACCCAGACCATACCTGACATAGCTGGCCTAGACCATAGCTGACATTGCTGACATAGCTGACCTAGACCATAGCTGACATAGCTGACCTAGATCATAGCTGACCTGGACCATAGCTGACATAGCTGGCCTAGATCATAGCTGACATAGCTGACCTGGACCATAGCTGACACAGCTGACCTGAACCATGGCTGACATAGCTGACCTAGACCATAGCTGACATAGCTGACATAACTGACCTAGACCATAGCTGACATAGCTGGCCAATAGGCTCAAGAATCTAGCGGGTCGGACGGTCCAGACCTTTATCATCAGCCCCATGATCCAGCCTCTGGTCCAGGAGAATTTAGCTAGAAATAAAGGAGGACCTGCACATCTAACTTTACTATATTCCTAACTAGACGGAGAAGTTCGATTTTTGACAGAAACTTTTGTCAAAATTGACCTAGAGAAATGAAAATTAGATCAAAATGATCAGCAAAGTGCGAGGAATCGTTTGCAATTTGATTCTTAGTTTCAGCCNNNNNNNNNNAAACTAAGAATCAAATTGCAAACGATTACTGACATTTTGCTGCTCATTTTGATCTAATTTTTAGTTCTCTGGGCCAATTTTGACAAAAGTTAATGTAAAAAATCGAACTTCTCCGTCTAGTTAGGAATATAGTAAAGTTAGATGTGCAGGTCCTCCTTTATTTCTAGCTAAATTCTCCTGGACCAGAGGCTGGATCATGGGGCTGATGATAAAGGTCTGGACCGTCCGACCCGTTCCCAACCATTTAACTTTGAACTCAATTATCTCGATTTCAGTGAGAGATATCAAAAATTTGTCAACTGATAAAATATAGGCCAAATTATGATAGACAATTGATCAGTTGACCCCTTTTTGA</canonical>
            <polymorphic>TAGCTAGGGACCTAGCTGAGTAATAGGCTCAGAGCTAGCTAGCCTAGAACATAGCTGACATTGCTGACCTAGACCATAGCTGACATAGCTGGCCTAGACCATAGCTGACATTGCTGACCCAGACCATACCTGACATAGCTGGCCTAGACCATAGCTGACATTGCTGACATAGCTGACCTAGACCATAGCTGACATAGCTGACCTAGATCATAGCTGACCTGGACCATAGCTGACATAGCTGGCCTAGATCATAGCTGACATAGCTGACCTGGACCATAGCTGACACAGCTGACCTGAACCATGGCTGACATAGCTGACCTAGACCATAGCTGACATAGCTGACATAACTGACCTAGACCATAGCTGACATAGCTGGCCAATAGGCTCAAGAATCTAGCGGGTCGGACGGTCCAGACCTTTATCATCAGCCCCATGATCCAGCCTCTGGTCCAGGAGAATTTAGCTAGAAATAAAGGAGGACCTGCACATCTAACTTTACYATATTCCTAACTAGACGGAGAAGTTCGATTTTTGACAGAAACTTTTGTCAAAATTGACCTAGAGAAATGAAAATTAGATCAAAATGATCAGCAAAGTGCGAGGAATCGTTTGCAATTTGATTCTTAGTTTCAGCCNNNNNNNNNNAAACTAAGAATCAAATTGCAAACGATTACTGACATTTTGCTGCTCATTTTGATCTAATTTTTAGTTCTCTGGGCCAATTTTGACAAAAGTTAATGTAAAAAATCGAACTTCTCCGTCTAGTTAGGAATATAGTAAAGTTAGATGTGCAGGTCCTCCTTTATTTCTAGCTAAATTCTCCTGGACCAGAGGCTGGATCATGGGGCTGATGATAAAGGTCTGGACCGTCCGACCCGTTCCCAACCATTTAACTTTGAACTCAATTATCTCGATTTCAGTGAGAGATATCAAAAATTTGTCAACTGATAAAATATAGGCCAAATTATGATAGACAATTGATCAGTTGACCCCTTTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCCAGACCTTTATCATCAG</pcr_primer_p1>
		<pcr_primer_p2>AAACTAAGAATCAAATTGCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>GGTCCAGACCTTTATCATCAGCCCCATGATCCAGCCTCTGGTCCAGGAGAATTTAGCTAGAAATAAAGGAGGACCTGCACATCTAACTTTACTATATTCCTAACTAGACGGAGAAGTTCGATTTTTGACAGAAACTTTTGTCAAAATTGACCTAGAGAAATGAAAATTAGATCAAAATGATCAGCAAAGTGCGAGGAATCGTTTGCAATTTGATTCTTAGTTT</canonical_amplicon>
		<polymorphic_amplicon>GGTCCAGACCTTTATCATCAGCCCCATGATCCAGCCTCTGGTCCAGGAGAATTTAGCTAGAAATAAAGGAGGACCTGCACATCTAACTTTACYATATTCCTAACTAGACGGAGAAGTTCGATTTTTGACAGAAACTTTTGTCAAAATTGACCTAGAGAAATGAAAATTAGATCAAAATGATCAGCAAAGTGCGAGGAATCGTTTGCAATTTGATTCTTAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb680</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>952982</contig_pos>
        <strand>+</strand>
        <context>TTTTTGACAG[A/T]AACTTTTGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTAACTTTACTATATTCCTAACTAGACGGAGAAGTTCGATTTTTGACAG</left_flank>
        <right_flank>AACTTTTGTCAAAATTGACCTAGAGAAATGAAAATTAGATCAAAATGATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGCCTAGAACATAGCTGACATTGCTGACCTAGACCATAGCTGACATAGCTGGCCTAGACCATAGCTGACATTGCTGACCCAGACCATACCTGACATAGCTGGCCTAGACCATAGCTGACATTGCTGACATAGCTGACCTAGACCATAGCTGACATAGCTGACCTAGATCATAGCTGACCTGGACCATAGCTGACATAGCTGGCCTAGATCATAGCTGACATAGCTGACCTGGACCATAGCTGACACAGCTGACCTGAACCATGGCTGACATAGCTGACCTAGACCATAGCTGACATAGCTGACATAACTGACCTAGACCATAGCTGACATAGCTGGCCAATAGGCTCAAGAATCTAGCGGGTCGGACGGTCCAGACCTTTATCATCAGCCCCATGATCCAGCCTCTGGTCCAGGAGAATTTAGCTAGAAATAAAGGAGGACCTGCACATCTAACTTTACTATATTCCTAACTAGACGGAGAAGTTCGATTTTTGACAGAAACTTTTGTCAAAATTGACCTAGAGAAATGAAAATTAGATCAAAATGATCAGCAAAGTGCGAGGAATCGTTTGCAATTTGATTCTTAGTTTCAGCCNNNNNNNNNNAAACTAAGAATCAAATTGCAAACGATTACTGACATTTTGCTGCTCATTTTGATCTAATTTTTAGTTCTCTGGGCCAATTTTGACAAAAGTTAATGTAAAAAATCGAACTTCTCCGTCTAGTTAGGAATATAGTAAAGTTAGATGTGCAGGTCCTCCTTTATTTCTAGCTAAATTCTCCTGGACCAGAGGCTGGATCATGGGGCTGATGATAAAGGTCTGGACCGTCCGACCCGTTCCCAACCATTTAACTTTGAACTCAATTATCTCGATTTCAGTGAGAGATATCAAAAATTTGTCAACTGATAAAATATAGGCCAAATTATGATAGACAATTGATCAGTTGACCCCTTTTTGATATCTTTTAAAGGAAATGAGATAATTGAGCTCAAAGTGC</canonical>
            <polymorphic>TAGCCTAGAACATAGCTGACATTGCTGACCTAGACCATAGCTGACATAGCTGGCCTAGACCATAGCTGACATTGCTGACCCAGACCATACCTGACATAGCTGGCCTAGACCATAGCTGACATTGCTGACATAGCTGACCTAGACCATAGCTGACATAGCTGACCTAGATCATAGCTGACCTGGACCATAGCTGACATAGCTGGCCTAGATCATAGCTGACATAGCTGACCTGGACCATAGCTGACACAGCTGACCTGAACCATGGCTGACATAGCTGACCTAGACCATAGCTGACATAGCTGACATAACTGACCTAGACCATAGCTGACATAGCTGGCCAATAGGCTCAAGAATCTAGCGGGTCGGACGGTCCAGACCTTTATCATCAGCCCCATGATCCAGCCTCTGGTCCAGGAGAATTTAGCTAGAAATAAAGGAGGACCTGCACATCTAACTTTACTATATTCCTAACTAGACGGAGAAGTTCGATTTTTGACAGWAACTTTTGTCAAAATTGACCTAGAGAAATGAAAATTAGATCAAAATGATCAGCAAAGTGCGAGGAATCGTTTGCAATTTGATTCTTAGTTTCAGCCNNNNNNNNNNAAACTAAGAATCAAATTGCAAACGATTACTGACATTTTGCTGCTCATTTTGATCTAATTTTTAGTTCTCTGGGCCAATTTTGACAAAAGTTAATGTAAAAAATCGAACTTCTCCGTCTAGTTAGGAATATAGTAAAGTTAGATGTGCAGGTCCTCCTTTATTTCTAGCTAAATTCTCCTGGACCAGAGGCTGGATCATGGGGCTGATGATAAAGGTCTGGACCGTCCGACCCGTTCCCAACCATTTAACTTTGAACTCAATTATCTCGATTTCAGTGAGAGATATCAAAAATTTGTCAACTGATAAAATATAGGCCAAATTATGATAGACAATTGATCAGTTGACCCCTTTTTGATATCTTTTAAAGGAAATGAGATAATTGAGCTCAAAGTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGACCTGCACATCTAACTTTAC</pcr_primer_p1>
		<pcr_primer_p2>GGCCCAGAGAACTAAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GGACCTGCACATCTAACTTTACTATATTCCTAACTAGACGGAGAAGTTCGATTTTTGACAGAAACTTTTGTCAAAATTGACCTAGAGAAATGAAAATTAGATCAAAATGATCAGCAAAGTGCGAGGAATCGTTTGCAATTTGATTCTTAGTTTCAGCCNNNNNNNNNNAAACTAAGAATCAAATTGCAAACGATTACTGACATTTTGCTGCTCATTTTGATCTAATTTTTAGTTCTCTGGGCC</canonical_amplicon>
		<polymorphic_amplicon>GGACCTGCACATCTAACTTTACTATATTCCTAACTAGACGGAGAAGTTCGATTTTTGACAGWAACTTTTGTCAAAATTGACCTAGAGAAATGAAAATTAGATCAAAATGATCAGCAAAGTGCGAGGAATCGTTTGCAATTTGATTCTTAGTTTCAGCCNNNNNNNNNNAAACTAAGAATCAAATTGCAAACGATTACTGACATTTTGCTGCTCATTTTGATCTAATTTTTAGTTCTCTGGGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb682</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>953903</contig_pos>
        <strand>+</strand>
        <context>GGTGGATGGA[G/T]GGAGGGARAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCTCAAGCCTAGGAGAGGAGGAAAACGGAAAAAGAGGTGTGGTGGATGGA</left_flank>
        <right_flank>GGAGGGAGAAGAAGACAAATTGGCTATGTATATGTGCACACGGCCACAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATTATGATAGACAATTGATCAGTTGACCCCTTTTTGATATCTTTTAAAGGAAATGAGATAATTGAGCTCAAAGTGCAAACATATCGTAAACACTAAATAAGCGCCCTCCAACAGTTAACTTCGAGTCCAAATATCACAATTTCTGTCAGAGATATCAAAAAGCGGTTAACTGATAAAATATTGGTAATATTATGAGGAATATTTTATCAGTTGACAGATTTCCGATATCTTCCACAGGAATTGAGATAATTGAGCTTAAAGCTGACGACTTGGGTGAGCGCCAATTAAAGGAAATACGGTAGCTAGCTGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTGGACCCGCTGAAAAATCTAGATTCTCCAGAACCCCAAAAGTCAGGAGATTTGTCAAAGAAAACCCAAAAAACCCTATAAATCGGTCACCTCAAGCCTAGGAGAGGAGGAAAACGGAAAAAGAGGTGTGGTGGATGGATGGAGGGAGAAGAAGACAAATTGGCTATGTATATGTGCACACGGCCACAATTACGAAGAAGCCATGAGCAATCACCTTGGTAGCCAGAGAAGGGGCACATCTAACGGAGGAGCTTGCCAAGACCTGCACATCTAACTGTGCCTTGCCCTTCTTGAAGGAATCTTGCAGAATGGCAAGTGATAAAGTGTTATCAGTCAAAAAAATAACTTCAGAGGCGCCGCCGCGATCCTATTTCCGCTGAAATGTTCTATAGAAAAATTACAGTATGACGAAACCAATGATATAGCAAATAGAGCGGCGCAAGAGCGCACTATCGTATCTTTTTAGTCTATTTATCGATTTTTCTATGTTTTTTCACCATTTTTTCGCGATTTACTACATCGAAAAACGGTGAAAATCGTCGAAAAATTTATTGAAAGATGTCTTAAAGGCGCAATTGCGAATTACCGTATTTATCGATTTTCTCGATTTTTCAACGATTTTTCATCGTTTTTTCAATGG</canonical>
            <polymorphic>CAAATTATGATAGACAATTGATCAGTTGACCCCTTTTTGATATCTTTTAAAGGAAATGAGATAATTGAGCTCAAAGTGCAAACATATCGTAAACACTAAATAAGCGCCCTCCAACAGTTAACTTCGAGTCCAAATATCACAATTTCTGTCAGAGATATCAAAAAGCGGTTAACTGATAAAATATTGGTAATATTATGAGGAATATTTTATCAGTTGACAGATTTCCGATATCTTCCACAGGAATTGAGATAATTGAGCTTAAAGCTGACGACTTGGGTGAGCGCCAATTAAAGGAAATACGGTAGCTAGCTGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTGGACCCGCTGAAAAATCTAGATTCTCCAGAACCCCAAAAGTCAGGAGATTTGTCAAAGAAAACCCAAAAAACCCTATAAATCGGTCACCTCAAGCCTAGGAGAGGAGGAAAACGGAAAAAGAGGTGTGGTGGATGGAKGGAGGGAGAAGAAGACAAATTGGCTATGTATATGTGCACACGGCCACAATTACGAAGAAGCCATGAGCAATCACCTTGGTAGCCAGAGAAGGGGCACATCTAACGGAGGAGCTTGCCAAGACCTGCACATCTAACTGTGCCTTGCCCTTCTTGAAGGAATCTTGCAGAATGGCAAGTGATAAAGTGTTATCAGTCAAAAAAATAACTTCAGAGGCGCCGCCGCGATCCTATTTCCGCTGAAATGTTCTATAGAAAAATTACAGTATGACGAAACCAATGATATAGCAAATAGAGCGGCGCAAGAGCGCACTATCGTATCTTTTTAGTCTATTTATCGATTTTTCTATGTTTTTTCACCATTTTTTCGCGATTTACTACATCGAAAAACGGTGAAAATCGTCGAAAAATTTATTGAAAGATGTCTTAAAGGCGCAATTGCGAATTACCGTATTTATCGATTTTCTCGATTTTTCAACGATTTTTCATCGTTTTTTCAATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAACATCTAGATTCTCAAACT</pcr_primer_p1>
		<pcr_primer_p2>ATGGCTTCTTCGTAATTGTG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTGGACCCGCTGAAAAATCTAGATTCTCCAGAACCCCAAAAGTCAGGAGATTTGTCAAAGAAAACCCAAAAAACCCTATAAATCGGTCACCTCAAGCCTAGGAGAGGAGGAAAACGGAAAAAGAGGTGTGGTGGATGGATGGAGGGAGAAGAAGACAAATTGGCTATGTATATGTGCACACGGCCACAATTACGAAGAAGCCAT</canonical_amplicon>
		<polymorphic_amplicon>TGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTGGACCCGCTGAAAAATCTAGATTCTCCAGAACCCCAAAAGTCAGGAGATTTGTCAAAGAAAACCCAAAAAACCCTATAAATCGGTCACCTCAAGCCTAGGAGAGGAGGAAAACGGAAAAAGAGGTGTGGTGGATGGAKGGAGGGAGAAGAAGACAAATTGGCTATGTATATGTGCACACGGCCACAATTACGAAGAAGCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb683</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>953885</contig_pos>
        <strand>+</strand>
        <context>AAACGGAAAA[A/G]GAGGTGTGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACCCTATAAATCGGTCACCTCAAGCCTAGGAGAGGAGGAAAACGGAAAA</left_flank>
        <right_flank>GAGGTGTGGTGGATGGATGGAGGGAGAAGAAGACAAATTGGCTATGTATA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTGATAAAATATAGGCCAAATTATGATAGACAATTGATCAGTTGACCCCTTTTTGATATCTTTTAAAGGAAATGAGATAATTGAGCTCAAAGTGCAAACATATCGTAAACACTAAATAAGCGCCCTCCAACAGTTAACTTCGAGTCCAAATATCACAATTTCTGTCAGAGATATCAAAAAGCGGTTAACTGATAAAATATTGGTAATATTATGAGGAATATTTTATCAGTTGACAGATTTCCGATATCTTCCACAGGAATTGAGATAATTGAGCTTAAAGCTGACGACTTGGGTGAGCGCCAATTAAAGGAAATACGGTAGCTAGCTGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTGGACCCGCTGAAAAATCTAGATTCTCCAGAACCCCAAAAGTCAGGAGATTTGTCAAAGAAAACCCAAAAAACCCTATAAATCGGTCACCTCAAGCCTAGGAGAGGAGGAAAACGGAAAAAGAGGTGTGGTGGATGGATGGAGGGAGAAGAAGACAAATTGGCTATGTATATGTGCACACGGCCACAATTACGAAGAAGCCATGAGCAATCACCTTGGTAGCCAGAGAAGGGGCACATCTAACGGAGGAGCTTGCCAAGACCTGCACATCTAACTGTGCCTTGCCCTTCTTGAAGGAATCTTGCAGAATGGCAAGTGATAAAGTGTTATCAGTCAAAAAAATAACTTCAGAGGCGCCGCCGCGATCCTATTTCCGCTGAAATGTTCTATAGAAAAATTACAGTATGACGAAACCAATGATATAGCAAATAGAGCGGCGCAAGAGCGCACTATCGTATCTTTTTAGTCTATTTATCGATTTTTCTATGTTTTTTCACCATTTTTTCGCGATTTACTACATCGAAAAACGGTGAAAATCGTCGAAAAATTTATTGAAAGATGTCTTAAAGGCGCAATTGCGAATTACCGTATTTATCGATTTTCTCGATTTTTCAACGATTTT</canonical>
            <polymorphic>AACTGATAAAATATAGGCCAAATTATGATAGACAATTGATCAGTTGACCCCTTTTTGATATCTTTTAAAGGAAATGAGATAATTGAGCTCAAAGTGCAAACATATCGTAAACACTAAATAAGCGCCCTCCAACAGTTAACTTCGAGTCCAAATATCACAATTTCTGTCAGAGATATCAAAAAGCGGTTAACTGATAAAATATTGGTAATATTATGAGGAATATTTTATCAGTTGACAGATTTCCGATATCTTCCACAGGAATTGAGATAATTGAGCTTAAAGCTGACGACTTGGGTGAGCGCCAATTAAAGGAAATACGGTAGCTAGCTGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTGGACCCGCTGAAAAATCTAGATTCTCCAGAACCCCAAAAGTCAGGAGATTTGTCAAAGAAAACCCAAAAAACCCTATAAATCGGTCACCTCAAGCCTAGGAGAGGAGGAAAACGGAAAARGAGGTGTGGTGGATGGATGGAGGGAGAAGAAGACAAATTGGCTATGTATATGTGCACACGGCCACAATTACGAAGAAGCCATGAGCAATCACCTTGGTAGCCAGAGAAGGGGCACATCTAACGGAGGAGCTTGCCAAGACCTGCACATCTAACTGTGCCTTGCCCTTCTTGAAGGAATCTTGCAGAATGGCAAGTGATAAAGTGTTATCAGTCAAAAAAATAACTTCAGAGGCGCCGCCGCGATCCTATTTCCGCTGAAATGTTCTATAGAAAAATTACAGTATGACGAAACCAATGATATAGCAAATAGAGCGGCGCAAGAGCGCACTATCGTATCTTTTTAGTCTATTTATCGATTTTTCTATGTTTTTTCACCATTTTTTCGCGATTTACTACATCGAAAAACGGTGAAAATCGTCGAAAAATTTATTGAAAGATGTCTTAAAGGCGCAATTGCGAATTACCGTATTTATCGATTTTCTCGATTTTTCAACGATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAACATCTAGATTCTCAAACT</pcr_primer_p1>
		<pcr_primer_p2>GTGCACATATACATAGCCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>TGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTGGACCCGCTGAAAAATCTAGATTCTCCAGAACCCCAAAAGTCAGGAGATTTGTCAAAGAAAACCCAAAAAACCCTATAAATCGGTCACCTCAAGCCTAGGAGAGGAGGAAAACGGAAAAAGAGGTGTGGTGGATGGATGGAGGGAGAAGAAGACAAATTGGCTATGTATATGTGCAC</canonical_amplicon>
		<polymorphic_amplicon>TGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTGGACCCGCTGAAAAATCTAGATTCTCCAGAACCCCAAAAGTCAGGAGATTTGTCAAAGAAAACCCAAAAAACCCTATAAATCGGTCACCTCAAGCCTAGGAGAGGAGGAAAACGGAAAARGAGGTGTGGTGGATGGATGGAGGGAGAAGAAGACAAATTGGCTATGTATATGTGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb684</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>953800</contig_pos>
        <strand>+</strand>
        <context>TCCAGAACCC[C/G]AAAAGTCAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAGTCAGTATCCCGGTGGACCCGCTGAAAAATCTAGATTCTCCAGAACCC</left_flank>
        <right_flank>AAAAGTCAGGAGATTTGTCAAAGAAAACCCAAAAAACCCTATAAATCGGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTCTGGACCGTCCGACCCGTTCCCAACCATTTAACTTTGAACTCAATTATCTCGATTTCAGTGAGAGATATCAAAAATTTGTCAACTGATAAAATATAGGCCAAATTATGATAGACAATTGATCAGTTGACCCCTTTTTGATATCTTTTAAAGGAAATGAGATAATTGAGCTCAAAGTGCAAACATATCGTAAACACTAAATAAGCGCCCTCCAACAGTTAACTTCGAGTCCAAATATCACAATTTCTGTCAGAGATATCAAAAAGCGGTTAACTGATAAAATATTGGTAATATTATGAGGAATATTTTATCAGTTGACAGATTTCCGATATCTTCCACAGGAATTGAGATAATTGAGCTTAAAGCTGACGACTTGGGTGAGCGCCAATTAAAGGAAATACGGTAGCTAGCTGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTGGACCCGCTGAAAAATCTAGATTCTCCAGAACCCCAAAAGTCAGGAGATTTGTCAAAGAAAACCCAAAAAACCCTATAAATCGGTCACCTCAAGCCTAGGAGAGGAGGAAAACGGAAAAAGAGGTGTGGTGGATGGATGGAGGGAGAAGAAGACAAATTGGCTATGTATATGTGCACACGGCCACAATTACGAAGAAGCCATGAGCAATCACCTTGGTAGCCAGAGAAGGGGCACATCTAACGGAGGAGCTTGCCAAGACCTGCACATCTAACTGTGCCTTGCCCTTCTTGAAGGAATCTTGCAGAATGGCAAGTGATAAAGTGTTATCAGTCAAAAAAATAACTTCAGAGGCGCCGCCGCGATCCTATTTCCGCTGAAATGTTCTATAGAAAAATTACAGTATGACGAAACCAATGATATAGCAAATAGAGCGGCGCAAGAGCGCACTATCGTATCTTTTTAGTCTATTTATCGATTTTTCTATGTTTTTTCACCATTTTTTCGCGATTTACTACATCGAAAAACGGTGAAAAT</canonical>
            <polymorphic>AGGTCTGGACCGTCCGACCCGTTCCCAACCATTTAACTTTGAACTCAATTATCTCGATTTCAGTGAGAGATATCAAAAATTTGTCAACTGATAAAATATAGGCCAAATTATGATAGACAATTGATCAGTTGACCCCTTTTTGATATCTTTTAAAGGAAATGAGATAATTGAGCTCAAAGTGCAAACATATCGTAAACACTAAATAAGCGCCCTCCAACAGTTAACTTCGAGTCCAAATATCACAATTTCTGTCAGAGATATCAAAAAGCGGTTAACTGATAAAATATTGGTAATATTATGAGGAATATTTTATCAGTTGACAGATTTCCGATATCTTCCACAGGAATTGAGATAATTGAGCTTAAAGCTGACGACTTGGGTGAGCGCCAATTAAAGGAAATACGGTAGCTAGCTGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTGGACCCGCTGAAAAATCTAGATTCTCCAGAACCCSAAAAGTCAGGAGATTTGTCAAAGAAAACCCAAAAAACCCTATAAATCGGTCACCTCAAGCCTAGGAGAGGAGGAAAACGGAAAAAGAGGTGTGGTGGATGGATGGAGGGAGAAGAAGACAAATTGGCTATGTATATGTGCACACGGCCACAATTACGAAGAAGCCATGAGCAATCACCTTGGTAGCCAGAGAAGGGGCACATCTAACGGAGGAGCTTGCCAAGACCTGCACATCTAACTGTGCCTTGCCCTTCTTGAAGGAATCTTGCAGAATGGCAAGTGATAAAGTGTTATCAGTCAAAAAAATAACTTCAGAGGCGCCGCCGCGATCCTATTTCCGCTGAAATGTTCTATAGAAAAATTACAGTATGACGAAACCAATGATATAGCAAATAGAGCGGCGCAAGAGCGCACTATCGTATCTTTTTAGTCTATTTATCGATTTTTCTATGTTTTTTCACCATTTTTTCGCGATTTACTACATCGAAAAACGGTGAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAACATCTAGATTCTCAAACT</pcr_primer_p1>
		<pcr_primer_p2>GTGCACATATACATAGCCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>TGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTGGACCCGCTGAAAAATCTAGATTCTCCAGAACCCCAAAAGTCAGGAGATTTGTCAAAGAAAACCCAAAAAACCCTATAAATCGGTCACCTCAAGCCTAGGAGAGGAGGAAAACGGAAAAAGAGGTGTGGTGGATGGATGGAGGGAGAAGAAGACAAATTGGCTATGTATATGTGCAC</canonical_amplicon>
		<polymorphic_amplicon>TGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTGGACCCGCTGAAAAATCTAGATTCTCCAGAACCCSAAAAGTCAGGAGATTTGTCAAAGAAAACCCAAAAAACCCTATAAATCGGTCACCTCAAGCCTAGGAGAGGAGGAAAACGGAAAAAGAGGTGTGGTGGATGGATGGAGGGAGAAGAAGACAAATTGGCTATGTATATGTGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb685</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>953771</contig_pos>
        <strand>+</strand>
        <context>CCGGTGGACC[C/T]GCTGAAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTGGACC</left_flank>
        <right_flank>GCTGAAAAATCTAGATTCTCCAGAACCCCAAAAGTCAGGAGATTTGTCAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAGGCTGGATCATGGGGCTGATGATAAAGGTCTGGACCGTCCGACCCGTTCCCAACCATTTAACTTTGAACTCAATTATCTCGATTTCAGTGAGAGATATCAAAAATTTGTCAACTGATAAAATATAGGCCAAATTATGATAGACAATTGATCAGTTGACCCCTTTTTGATATCTTTTAAAGGAAATGAGATAATTGAGCTCAAAGTGCAAACATATCGTAAACACTAAATAAGCGCCCTCCAACAGTTAACTTCGAGTCCAAATATCACAATTTCTGTCAGAGATATCAAAAAGCGGTTAACTGATAAAATATTGGTAATATTATGAGGAATATTTTATCAGTTGACAGATTTCCGATATCTTCCACAGGAATTGAGATAATTGAGCTTAAAGCTGACGACTTGGGTGAGCGCCAATTAAAGGAAATACGGTAGCTAGCTGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTGGACCCGCTGAAAAATCTAGATTCTCCAGAACCCCAAAAGTCAGGAGATTTGTCAAAGAAAACCCAAAAAACCCTATAAATCGGTCACCTCAAGCCTAGGAGAGGAGGAAAACGGAAAAAGAGGTGTGGTGGATGGATGGAGGGAGAAGAAGACAAATTGGCTATGTATATGTGCACACGGCCACAATTACGAAGAAGCCATGAGCAATCACCTTGGTAGCCAGAGAAGGGGCACATCTAACGGAGGAGCTTGCCAAGACCTGCACATCTAACTGTGCCTTGCCCTTCTTGAAGGAATCTTGCAGAATGGCAAGTGATAAAGTGTTATCAGTCAAAAAAATAACTTCAGAGGCGCCGCCGCGATCCTATTTCCGCTGAAATGTTCTATAGAAAAATTACAGTATGACGAAACCAATGATATAGCAAATAGAGCGGCGCAAGAGCGCACTATCGTATCTTTTTAGTCTATTTATCGATTTTTCTATGTTTTTTCACCATTTTTTCGC</canonical>
            <polymorphic>CAGAGGCTGGATCATGGGGCTGATGATAAAGGTCTGGACCGTCCGACCCGTTCCCAACCATTTAACTTTGAACTCAATTATCTCGATTTCAGTGAGAGATATCAAAAATTTGTCAACTGATAAAATATAGGCCAAATTATGATAGACAATTGATCAGTTGACCCCTTTTTGATATCTTTTAAAGGAAATGAGATAATTGAGCTCAAAGTGCAAACATATCGTAAACACTAAATAAGCGCCCTCCAACAGTTAACTTCGAGTCCAAATATCACAATTTCTGTCAGAGATATCAAAAAGCGGTTAACTGATAAAATATTGGTAATATTATGAGGAATATTTTATCAGTTGACAGATTTCCGATATCTTCCACAGGAATTGAGATAATTGAGCTTAAAGCTGACGACTTGGGTGAGCGCCAATTAAAGGAAATACGGTAGCTAGCTGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTGGACCYGCTGAAAAATCTAGATTCTCCAGAACCCCAAAAGTCAGGAGATTTGTCAAAGAAAACCCAAAAAACCCTATAAATCGGTCACCTCAAGCCTAGGAGAGGAGGAAAACGGAAAAAGAGGTGTGGTGGATGGATGGAGGGAGAAGAAGACAAATTGGCTATGTATATGTGCACACGGCCACAATTACGAAGAAGCCATGAGCAATCACCTTGGTAGCCAGAGAAGGGGCACATCTAACGGAGGAGCTTGCCAAGACCTGCACATCTAACTGTGCCTTGCCCTTCTTGAAGGAATCTTGCAGAATGGCAAGTGATAAAGTGTTATCAGTCAAAAAAATAACTTCAGAGGCGCCGCCGCGATCCTATTTCCGCTGAAATGTTCTATAGAAAAATTACAGTATGACGAAACCAATGATATAGCAAATAGAGCGGCGCAAGAGCGCACTATCGTATCTTTTTAGTCTATTTATCGATTTTTCTATGTTTTTTCACCATTTTTTCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>499 350 134 14 3</canonical_bands>
                <polymorphic_bands>849 134 14 3</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>497 350 153</canonical_bands>
                <polymorphic_bands>847 153</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>501 367 132</canonical_bands>
                <polymorphic_bands>868 132</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGAACATCTAGATTCTCAAACT</pcr_primer_p1>
		<pcr_primer_p2>GTGCACATATACATAGCCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>TGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTGGACCCGCTGAAAAATCTAGATTCTCCAGAACCCCAAAAGTCAGGAGATTTGTCAAAGAAAACCCAAAAAACCCTATAAATCGGTCACCTCAAGCCTAGGAGAGGAGGAAAACGGAAAAAGAGGTGTGGTGGATGGATGGAGGGAGAAGAAGACAAATTGGCTATGTATATGTGCAC</canonical_amplicon>
		<polymorphic_amplicon>TGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTGGACCYGCTGAAAAATCTAGATTCTCCAGAACCCCAAAAGTCAGGAGATTTGTCAAAGAAAACCCAAAAAACCCTATAAATCGGTCACCTCAAGCCTAGGAGAGGAGGAAAACGGAAAAAGAGGTGTGGTGGATGGATGGAGGGAGAAGAAGACAAATTGGCTATGTATATGTGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb686</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1004538</contig_pos>
        <strand>+</strand>
        <context>GCTCCTCGGC[A/G]TCCTCGAGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGCGCATCTTGGAGAGCGAGTTCTCGGCTTGATCGGCACGCTCCTCGGC</left_flank>
        <right_flank>TCCTCGAGTTGATGGGTGAGTTGCTTGTACTTTTGGAGGTTCAAGTTGGC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTTTTCAGAGCATTTGACTTTATCAGTAAAAATGGAAAAAAGATGGAACCATAAGAAGATGATGTACACACAGAACATTGCGTAGAGAGAGTTTTTTTTCGGATCATAGAATTATTATTAATGAAGGGGAGGGAGCACAAAAATAGCGATTTTTCGATTTATTACAAATTCTATAGTCTCAAAAAAGGTAGTTTCTACACAATTCCATTGCAAAAAAGGGTCTAAAAACAAGAAGAATTTTATAAGAGAAGTTGCTTTTTTTGGATGTGGGGGTCAAAAGATAACAATTAGGGAGCACAGGGGAAGAAAGAGCATGTAGATAAGGGGACTTCCTGGAGGATATGGATTTAGAAGTCAGAAGCACGGGCGCGCGATGGAGATCTGATGACGGCGGCCGATGCGGAGCTCTGGAGTCCTGGAGCAACCGAGGCGGAGGCACGAGACTTTGAGCGCATCTTGGAGAGCGAGTTCTCGGCTTGATCGGCACGCTCCTCGGCGTCCTCGAGTTGATGGGTGAGTTGCTTGTACTTTTGGAGGTTCAAGTTGGCGAGTTCCTCCTGGAAATATTTGAATTTCGTATAGGTTTTAGGTGAAAGAGGAGGAGGCCATCTGGAGATTATTGGGCAATTTAAGCTCATCCTTTACCTAATCCGAAGTCAAAATCGGATTAGGTGAAGGAGAGAATCATTGTGAGGGTCTGGGTCAAATTGAATCTTGTCATGTTGAACTCAAATTTTGTAAAATTTCAATTTTCCAGGTCCCCCTATTGTTCATAATTGCGAACGGGCCCCAAACGGACTACGAGCGGGCCAAAACCGCGAAGAGTTTTAGCCAACTTTAAGCTTATATATCAAAGTTCCTGTGAGAGATATTAGGAATTTATAAATTACAAAAATGTAGCTGATATGATGATAAACATTTTATTAGTTGACCACTTTTTGATATCTTTTACAGGAAATGAGATACATGAGCTCAACTTTGACGGCTTAGGGGCGCTC</canonical>
            <polymorphic>TTGTTTTCAGAGCATTTGACTTTATCAGTAAAAATGGAAAAAAGATGGAACCATAAGAAGATGATGTACACACAGAACATTGCGTAGAGAGAGTTTTTTTTCGGATCATAGAATTATTATTAATGAAGGGGAGGGAGCACAAAAATAGCGATTTTTCGATTTATTACAAATTCTATAGTCTCAAAAAAGGTAGTTTCTACACAATTCCATTGCAAAAAAGGGTCTAAAAACAAGAAGAATTTTATAAGAGAAGTTGCTTTTTTTGGATGTGGGGGTCAAAAGATAACAATTAGGGAGCACAGGGGAAGAAAGAGCATGTAGATAAGGGGACTTCCTGGAGGATATGGATTTAGAAGTCAGAAGCACGGGCGCGCGATGGAGATCTGATGACGGCGGCCGATGCGGAGCTCTGGAGTCCTGGAGCAACCGAGGCGGAGGCACGAGACTTTGAGCGCATCTTGGAGAGCGAGTTCTCGGCTTGATCGGCACGCTCCTCGGCRTCCTCGAGTTGATGGGTGAGTTGCTTGTACTTTTGGAGGTTCAAGTTGGCGAGTTCCTCCTGGAAATATTTGAATTTCGTATAGGTTTTAGGTGAAAGAGGAGGAGGCCATCTGGAGATTATTGGGCAATTTAAGCTCATCCTTTACCTAATCCGAAGTCAAAATCGGATTAGGTGAAGGAGAGAATCATTGTGAGGGTCTGGGTCAAATTGAATCTTGTCATGTTGAACTCAAATTTTGTAAAATTTCAATTTTCCAGGTCCCCCTATTGTTCATAATTGCGAACGGGCCCCAAACGGACTACGAGCGGGCCAAAACCGCGAAGAGTTTTAGCCAACTTTAAGCTTATATATCAAAGTTCCTGTGAGAGATATTAGGAATTTATAAATTACAAAAATGTAGCTGATATGATGATAAACATTTTATTAGTTGACCACTTTTTGATATCTTTTACAGGAAATGAGATACATGAGCTCAACTTTGACGGCTTAGGGGCGCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGGAGGATATGGATTTAGAAGT</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCAAATATTTCCAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CTGGAGGATATGGATTTAGAAGTCAGAAGCACGGGCGCGCGATGGAGATCTGATGACGGCGGCCGATGCGGAGCTCTGGAGTCCTGGAGCAACCGAGGCGGAGGCACGAGACTTTGAGCGCATCTTGGAGAGCGAGTTCTCGGCTTGATCGGCACGCTCCTCGGCGTCCTCGAGTTGATGGGTGAGTTGCTTGTACTTTTGGAGGTTCAAGTTGGCGAGTTCCTCCTGGAAATATTTGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>CTGGAGGATATGGATTTAGAAGTCAGAAGCACGGGCGCGCGATGGAGATCTGATGACGGCGGCCGATGCGGAGCTCTGGAGTCCTGGAGCAACCGAGGCGGAGGCACGAGACTTTGAGCGCATCTTGGAGAGCGAGTTCTCGGCTTGATCGGCACGCTCCTCGGCRTCCTCGAGTTGATGGGTGAGTTGCTTGTACTTTTGGAGGTTCAAGTTGGCGAGTTCCTCCTGGAAATATTTGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb687</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1004623</contig_pos>
        <strand>+</strand>
        <context>TTTCGTATAG[G/T]TTTTAGGTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGAGGTTCAAGTTGGCGAGTTCCTCCTGGAAATATTTGAATTTCGTATAG</left_flank>
        <right_flank>TTTTAGGTGAAAGAGGAGGAGGCCATCTGGAGATTATTGGGCAATTTAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGAGAGTTTTTTTTCGGATCATAGAATTATTATTAATGAAGGGGAGGGAGCACAAAAATAGCGATTTTTCGATTTATTACAAATTCTATAGTCTCAAAAAAGGTAGTTTCTACACAATTCCATTGCAAAAAAGGGTCTAAAAACAAGAAGAATTTTATAAGAGAAGTTGCTTTTTTTGGATGTGGGGGTCAAAAGATAACAATTAGGGAGCACAGGGGAAGAAAGAGCATGTAGATAAGGGGACTTCCTGGAGGATATGGATTTAGAAGTCAGAAGCACGGGCGCGCGATGGAGATCTGATGACGGCGGCCGATGCGGAGCTCTGGAGTCCTGGAGCAACCGAGGCGGAGGCACGAGACTTTGAGCGCATCTTGGAGAGCGAGTTCTCGGCTTGATCGGCACGCTCCTCGGCGTCCTCGAGTTGATGGGTGAGTTGCTTGTACTTTTGGAGGTTCAAGTTGGCGAGTTCCTCCTGGAAATATTTGAATTTCGTATAGGTTTTAGGTGAAAGAGGAGGAGGCCATCTGGAGATTATTGGGCAATTTAAGCTCATCCTTTACCTAATCCGAAGTCAAAATCGGATTAGGTGAAGGAGAGAATCATTGTGAGGGTCTGGGTCAAATTGAATCTTGTCATGTTGAACTCAAATTTTGTAAAATTTCAATTTTCCAGGTCCCCCTATTGTTCATAATTGCGAACGGGCCCCAAACGGACTACGAGCGGGCCAAAACCGCGAAGAGTTTTAGCCAACTTTAAGCTTATATATCAAAGTTCCTGTGAGAGATATTAGGAATTTATAAATTACAAAAATGTAGCTGATATGATGATAAACATTTTATTAGTTGACCACTTTTTGATATCTTTTACAGGAAATGAGATACATGAGCTCAACTTTGACGGCTTAGGGGCGCTCCATTAGAGGGTTTACGGTACCTCTACTGCTTTGATAGAACATCACCTACTTTGAGCTCATATATCTCAATTCCTTCAAAAGATAT</canonical>
            <polymorphic>AGAGAGAGTTTTTTTTCGGATCATAGAATTATTATTAATGAAGGGGAGGGAGCACAAAAATAGCGATTTTTCGATTTATTACAAATTCTATAGTCTCAAAAAAGGTAGTTTCTACACAATTCCATTGCAAAAAAGGGTCTAAAAACAAGAAGAATTTTATAAGAGAAGTTGCTTTTTTTGGATGTGGGGGTCAAAAGATAACAATTAGGGAGCACAGGGGAAGAAAGAGCATGTAGATAAGGGGACTTCCTGGAGGATATGGATTTAGAAGTCAGAAGCACGGGCGCGCGATGGAGATCTGATGACGGCGGCCGATGCGGAGCTCTGGAGTCCTGGAGCAACCGAGGCGGAGGCACGAGACTTTGAGCGCATCTTGGAGAGCGAGTTCTCGGCTTGATCGGCACGCTCCTCGGCGTCCTCGAGTTGATGGGTGAGTTGCTTGTACTTTTGGAGGTTCAAGTTGGCGAGTTCCTCCTGGAAATATTTGAATTTCGTATAGKTTTTAGGTGAAAGAGGAGGAGGCCATCTGGAGATTATTGGGCAATTTAAGCTCATCCTTTACCTAATCCGAAGTCAAAATCGGATTAGGTGAAGGAGAGAATCATTGTGAGGGTCTGGGTCAAATTGAATCTTGTCATGTTGAACTCAAATTTTGTAAAATTTCAATTTTCCAGGTCCCCCTATTGTTCATAATTGCGAACGGGCCCCAAACGGACTACGAGCGGGCCAAAACCGCGAAGAGTTTTAGCCAACTTTAAGCTTATATATCAAAGTTCCTGTGAGAGATATTAGGAATTTATAAATTACAAAAATGTAGCTGATATGATGATAAACATTTTATTAGTTGACCACTTTTTGATATCTTTTACAGGAAATGAGATACATGAGCTCAACTTTGACGGCTTAGGGGCGCTCCATTAGAGGGTTTACGGTACCTCTACTGCTTTGATAGAACATCACCTACTTTGAGCTCATATATCTCAATTCCTTCAAAAGATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTACTTTTGGAGGTTCAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TATGAACAATAGGGGGACCT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TGTACTTTTGGAGGTTCAAGTTGGCGAGTTCCTCCTGGAAATATTTGAATTTCGTATAGGTTTTAGGTGAAAGAGGAGGAGGCCATCTGGAGATTATTGGGCAATTTAAGCTCATCCTTTACCTAATCCGAAGTCAAAATCGGATTAGGTGAAGGAGAGAATCATTGTGAGGGTCTGGGTCAAATTGAATCTTGTCATGTTGAACTCAAATTTTGTAAAATTTCAATTTTCCAGGTCCCCCTATTGTTCATA</canonical_amplicon>
		<polymorphic_amplicon>TGTACTTTTGGAGGTTCAAGTTGGCGAGTTCCTCCTGGAAATATTTGAATTTCGTATAGKTTTTAGGTGAAAGAGGAGGAGGCCATCTGGAGATTATTGGGCAATTTAAGCTCATCCTTTACCTAATCCGAAGTCAAAATCGGATTAGGTGAAGGAGAGAATCATTGTGAGGGTCTGGGTCAAATTGAATCTTGTCATGTTGAACTCAAATTTTGTAAAATTTCAATTTTCCAGGTCCCCCTATTGTTCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb688</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1005965</contig_pos>
        <strand>+</strand>
        <context>TGGCTTGGTC[A/G]CGGGCATCGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGGCAGAAGTCAAGCTGGACACTTGAGCGTTGGCTTCGTTGGCTTGGTC</left_flank>
        <right_flank>CGGGCATCGGCGGCTTCGTACTCGGCTTGCTTGCGGGCTCTCTCGGCGGC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGATGACCTAGAAGACGTTGTTTTAGGATTAGTGAAGGTTCTAGAATCCTTACCTTCTTTCCTCCCTTGAGAGCGGCGGCTTCGGCCTCATCGAGACGGACTTGGATCTCCTTGAGCTGTTGCTCAAGTCCCTTGCGAAGACGGTCGACGTGTTGAGAGTGCTCTTGCTCTTGACGGAGCTCCTCGGCGAGTCTGGTGGCGTCGGCGACGGCCTTCTTGGATCTCTCCTCGGCGGCCTTGTACTCGTTGAGGGTCTCGTCGAGGTCGGCCTGGAATATATGATGTTTAAAGATAGCTAGGCAGATCTAGAAGTCTAGAATTAAGAATTCCTGTCTTTCTATGATCGGGATATAGGAATCTGGCTATATCTAGCTAAGAGGTATCTATCTAGATCTGAAGGGATTCTAAACTCACATGGATGGCTTGGATCTCTCCCTCGAGCTTTCTCTTGGCAGAAGTCAAGCTGGACACTTGAGCGTTGGCTTCGTTGGCTTGGTCACGGGCATCGGCGGCTTCGTACTCGGCTTGCTTGCGGGCTCTCTCGGCGGCCTCGTTGGCAACCAAGAGCTCCTCCTTCTCGGATTGCAGAAGAGTGGCACGCTTCTCGGCGTTGAAGAATTGCTCACGGGTGTCGGCTCCGTTGCGTTGCTCCTCCTCGACTTGCAATTGCAACTCGCGGACTTGCTCCTGGTATCTCTTCAAATTCTTCTGGGCGTCGGCGTTTGCCTTGTTGGCGTGGTCCAGGGCAATCTCGAGCTCGTTGATGTCAGCCTCGAGCTTCTTCTTGACGCGGAGAAGTTCGGCCTTTCCTTTGGCTTCGGTCTCGAGGGAAGCTTGCATCGACTCGAGGGCACGGGCGTGGTTCTTTCTGGTGTTCTCGAACTCTTCCTCCTTCTCCTGGATGCGCTTCTCGATTTCGGAACGGATCTGGGAGACCTCGACTTGGGCGCGGAGCACCTTGCTTTCCTCGGCCTCGAGGGCAGCCTCGGCCTCGTCCAA</canonical>
            <polymorphic>GCGATGACCTAGAAGACGTTGTTTTAGGATTAGTGAAGGTTCTAGAATCCTTACCTTCTTTCCTCCCTTGAGAGCGGCGGCTTCGGCCTCATCGAGACGGACTTGGATCTCCTTGAGCTGTTGCTCAAGTCCCTTGCGAAGACGGTCGACGTGTTGAGAGTGCTCTTGCTCTTGACGGAGCTCCTCGGCGAGTCTGGTGGCGTCGGCGACGGCCTTCTTGGATCTCTCCTCGGCGGCCTTGTACTCGTTGAGGGTCTCGTCGAGGTCGGCCTGGAATATATGATGTTTAAAGATAGCTAGGCAGATCTAGAAGTCTAGAATTAAGAATTCCTGTCTTTCTATGATCGGGATATAGGAATCTGGCTATATCTAGCTAAGAGGTATCTATCTAGATCTGAAGGGATTCTAAACTCACATGGATGGCTTGGATCTCTCCCTCGAGCTTTCTCTTGGCAGAAGTCAAGCTGGACACTTGAGCGTTGGCTTCGTTGGCTTGGTCRCGGGCATCGGCGGCTTCGTACTCGGCTTGCTTGCGGGCTCTCTCGGCGGCCTCGTTGGCAACCAAGAGCTCCTCCTTCTCGGATTGCAGAAGAGTGGCACGCTTCTCGGCGTTGAAGAATTGCTCACGGGTGTCGGCTCCGTTGCGTTGCTCCTCCTCGACTTGCAATTGCAACTCGCGGACTTGCTCCTGGTATCTCTTCAAATTCTTCTGGGCGTCGGCGTTTGCCTTGTTGGCGTGGTCCAGGGCAATCTCGAGCTCGTTGATGTCAGCCTCGAGCTTCTTCTTGACGCGGAGAAGTTCGGCCTTTCCTTTGGCTTCGGTCTCGAGGGAAGCTTGCATCGACTCGAGGGCACGGGCGTGGTTCTTTCTGGTGTTCTCGAACTCTTCCTCCTTCTCCTGGATGCGCTTCTCGATTTCGGAACGGATCTGGGAGACCTCGACTTGGGCGCGGAGCACCTTGCTTTCCTCGGCCTCGAGGGCAGCCTCGGCCTCGTCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>215 118 115 107 96 82 57 43 37 35 29 27 13 9 8 6 3</canonical_bands>
                <polymorphic_bands>215 125 118 115 107 82 57 43 37 35 27 13 9 8 6 3</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAAGGGATTCTAAACTCACA</pcr_primer_p1>
		<pcr_primer_p2>AAGAGATACCAGGAGCAAGTC</pcr_primer_p2>
		<pcr_amplicon_size>306</pcr_amplicon_size>
		<canonical_amplicon>CTGAAGGGATTCTAAACTCACATGGATGGCTTGGATCTCTCCCTCGAGCTTTCTCTTGGCAGAAGTCAAGCTGGACACTTGAGCGTTGGCTTCGTTGGCTTGGTCACGGGCATCGGCGGCTTCGTACTCGGCTTGCTTGCGGGCTCTCTCGGCGGCCTCGTTGGCAACCAAGAGCTCCTCCTTCTCGGATTGCAGAAGAGTGGCACGCTTCTCGGCGTTGAAGAATTGCTCACGGGTGTCGGCTCCGTTGCGTTGCTCCTCCTCGACTTGCAATTGCAACTCGCGGACTTGCTCCTGGTATCTCTT</canonical_amplicon>
		<polymorphic_amplicon>CTGAAGGGATTCTAAACTCACATGGATGGCTTGGATCTCTCCCTCGAGCTTTCTCTTGGCAGAAGTCAAGCTGGACACTTGAGCGTTGGCTTCGTTGGCTTGGTCRCGGGCATCGGCGGCTTCGTACTCGGCTTGCTTGCGGGCTCTCTCGGCGGCCTCGTTGGCAACCAAGAGCTCCTCCTTCTCGGATTGCAGAAGAGTGGCACGCTTCTCGGCGTTGAAGAATTGCTCACGGGTGTCGGCTCCGTTGCGTTGCTCCTCCTCGACTTGCAATTGCAACTCGCGGACTTGCTCCTGGTATCTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb689</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1005923</contig_pos>
        <strand>+</strand>
        <context>TCTTGGCAGA[A/G]GTCAAGCTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACTCACATGGATGGCTTGGATCTCTCCCTCGAGCTTTCTCTTGGCAGA</left_flank>
        <right_flank>GTCAAGCTGGACACTTGAGCGTTGGCTTCGTTGGCTTGGTCACGGGCATC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAACTCGGATTCGAGCTCGCGAACGCGTTGCTCGAGCTTGGCGATGACCTAGAAGACGTTGTTTTAGGATTAGTGAAGGTTCTAGAATCCTTACCTTCTTTCCTCCCTTGAGAGCGGCGGCTTCGGCCTCATCGAGACGGACTTGGATCTCCTTGAGCTGTTGCTCAAGTCCCTTGCGAAGACGGTCGACGTGTTGAGAGTGCTCTTGCTCTTGACGGAGCTCCTCGGCGAGTCTGGTGGCGTCGGCGACGGCCTTCTTGGATCTCTCCTCGGCGGCCTTGTACTCGTTGAGGGTCTCGTCGAGGTCGGCCTGGAATATATGATGTTTAAAGATAGCTAGGCAGATCTAGAAGTCTAGAATTAAGAATTCCTGTCTTTCTATGATCGGGATATAGGAATCTGGCTATATCTAGCTAAGAGGTATCTATCTAGATCTGAAGGGATTCTAAACTCACATGGATGGCTTGGATCTCTCCCTCGAGCTTTCTCTTGGCAGAAGTCAAGCTGGACACTTGAGCGTTGGCTTCGTTGGCTTGGTCACGGGCATCGGCGGCTTCGTACTCGGCTTGCTTGCGGGCTCTCTCGGCGGCCTCGTTGGCAACCAAGAGCTCCTCCTTCTCGGATTGCAGAAGAGTGGCACGCTTCTCGGCGTTGAAGAATTGCTCACGGGTGTCGGCTCCGTTGCGTTGCTCCTCCTCGACTTGCAATTGCAACTCGCGGACTTGCTCCTGGTATCTCTTCAAATTCTTCTGGGCGTCGGCGTTTGCCTTGTTGGCGTGGTCCAGGGCAATCTCGAGCTCGTTGATGTCAGCCTCGAGCTTCTTCTTGACGCGGAGAAGTTCGGCCTTTCCTTTGGCTTCGGTCTCGAGGGAAGCTTGCATCGACTCGAGGGCACGGGCGTGGTTCTTTCTGGTGTTCTCGAACTCTTCCTCCTTCTCCTGGATGCGCTTCTCGATTTCGGAACGGATCTGGGAGACCTCGACTTGGGCGCGGAGCAC</canonical>
            <polymorphic>TCCAACTCGGATTCGAGCTCGCGAACGCGTTGCTCGAGCTTGGCGATGACCTAGAAGACGTTGTTTTAGGATTAGTGAAGGTTCTAGAATCCTTACCTTCTTTCCTCCCTTGAGAGCGGCGGCTTCGGCCTCATCGAGACGGACTTGGATCTCCTTGAGCTGTTGCTCAAGTCCCTTGCGAAGACGGTCGACGTGTTGAGAGTGCTCTTGCTCTTGACGGAGCTCCTCGGCGAGTCTGGTGGCGTCGGCGACGGCCTTCTTGGATCTCTCCTCGGCGGCCTTGTACTCGTTGAGGGTCTCGTCGAGGTCGGCCTGGAATATATGATGTTTAAAGATAGCTAGGCAGATCTAGAAGTCTAGAATTAAGAATTCCTGTCTTTCTATGATCGGGATATAGGAATCTGGCTATATCTAGCTAAGAGGTATCTATCTAGATCTGAAGGGATTCTAAACTCACATGGATGGCTTGGATCTCTCCCTCGAGCTTTCTCTTGGCAGARGTCAAGCTGGACACTTGAGCGTTGGCTTCGTTGGCTTGGTCACGGGCATCGGCGGCTTCGTACTCGGCTTGCTTGCGGGCTCTCTCGGCGGCCTCGTTGGCAACCAAGAGCTCCTCCTTCTCGGATTGCAGAAGAGTGGCACGCTTCTCGGCGTTGAAGAATTGCTCACGGGTGTCGGCTCCGTTGCGTTGCTCCTCCTCGACTTGCAATTGCAACTCGCGGACTTGCTCCTGGTATCTCTTCAAATTCTTCTGGGCGTCGGCGTTTGCCTTGTTGGCGTGGTCCAGGGCAATCTCGAGCTCGTTGATGTCAGCCTCGAGCTTCTTCTTGACGCGGAGAAGTTCGGCCTTTCCTTTGGCTTCGGTCTCGAGGGAAGCTTGCATCGACTCGAGGGCACGGGCGTGGTTCTTTCTGGTGTTCTCGAACTCTTCCTCCTTCTCCTGGATGCGCTTCTCGATTTCGGAACGGATCTGGGAGACCTCGACTTGGGCGCGGAGCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAAGGGATTCTAAACTCACA</pcr_primer_p1>
		<pcr_primer_p2>AAGAGATACCAGGAGCAAGTC</pcr_primer_p2>
		<pcr_amplicon_size>306</pcr_amplicon_size>
		<canonical_amplicon>CTGAAGGGATTCTAAACTCACATGGATGGCTTGGATCTCTCCCTCGAGCTTTCTCTTGGCAGAAGTCAAGCTGGACACTTGAGCGTTGGCTTCGTTGGCTTGGTCACGGGCATCGGCGGCTTCGTACTCGGCTTGCTTGCGGGCTCTCTCGGCGGCCTCGTTGGCAACCAAGAGCTCCTCCTTCTCGGATTGCAGAAGAGTGGCACGCTTCTCGGCGTTGAAGAATTGCTCACGGGTGTCGGCTCCGTTGCGTTGCTCCTCCTCGACTTGCAATTGCAACTCGCGGACTTGCTCCTGGTATCTCTT</canonical_amplicon>
		<polymorphic_amplicon>CTGAAGGGATTCTAAACTCACATGGATGGCTTGGATCTCTCCCTCGAGCTTTCTCTTGGCAGARGTCAAGCTGGACACTTGAGCGTTGGCTTCGTTGGCTTGGTCACGGGCATCGGCGGCTTCGTACTCGGCTTGCTTGCGGGCTCTCTCGGCGGCCTCGTTGGCAACCAAGAGCTCCTCCTTCTCGGATTGCAGAAGAGTGGCACGCTTCTCGGCGTTGAAGAATTGCTCACGGGTGTCGGCTCCGTTGCGTTGCTCCTCCTCGACTTGCAATTGCAACTCGCGGACTTGCTCCTGGTATCTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb690</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1021919</contig_pos>
        <strand>+</strand>
        <context>GTCTAAGAGT[C/T]CAATAGAGCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGT</left_flank>
        <right_flank>CAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGGCTCATCCACCAAATCCGCCAAAAATTTCGAAATCGGATGGTCCTCTCCATGACTTTCCAAGCTAGACTGGACAGCGAGTTTCGGGATGTCCATAGAATACTTTTGAAGACGTGAGAGACATTTACAAGCGATATACAAACGACGTGTCACTTCAGGAGCACCTATTCCGAGTCGAGAACTGCAAATATTGAATTCCTAGGCCATCAGGAAATTTCTAGTCCACTTACATAAAATGCTGAACACCTCTAATTGCAATTAATTCCATATCTTCTGGAACATTCTTCATTTCACTTGCACAGTACGCCAATTGCTCATCTAGTTGTAGAATCGCCACGTTGCAGTCCGCCAGAATCCGCCCGTATTCTTCTTGAAGATTCTGAAGGTGTCTGTACTCTTGTACAGTATCCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATCCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGA</canonical>
            <polymorphic>TCTGGCTCATCCACCAAATCCGCCAAAAATTTCGAAATCGGATGGTCCTCTCCATGACTTTCCAAGCTAGACTGGACAGCGAGTTTCGGGATGTCCATAGAATACTTTTGAAGACGTGAGAGACATTTACAAGCGATATACAAACGACGTGTCACTTCAGGAGCACCTATTCCGAGTCGAGAACTGCAAATATTGAATTCCTAGGCCATCAGGAAATTTCTAGTCCACTTACATAAAATGCTGAACACCTCTAATTGCAATTAATTCCATATCTTCTGGAACATTCTTCATTTCACTTGCACAGTACGCCAATTGCTCATCTAGTTGTAGAATCGCCACGTTGCAGTCCGCCAGAATCCGCCCGTATTCTTCTTGAAGATTCTGAAGGTGTCTGTACTCTTGTACAGTATCCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTYCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATCCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>301 203 174 156 118 24 24</canonical_bands>
                <polymorphic_bands>419 203 174 156 24 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGAAGGTGTCTGTACTCTTGT</pcr_primer_p1>
		<pcr_primer_p2>ACTTGACTGGATTAGCTTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTGAAGGTGTCTGTACTCTTGTACAGTATCCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGT</canonical_amplicon>
		<polymorphic_amplicon>TCTGAAGGTGTCTGTACTCTTGTACAGTATCCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTYCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb691</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1021954</contig_pos>
        <strand>+</strand>
        <context>AAAGGTATCA[C/T]CGCTGGCTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCA</left_flank>
        <right_flank>CGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCGGATGGTCCTCTCCATGACTTTCCAAGCTAGACTGGACAGCGAGTTTCGGGATGTCCATAGAATACTTTTGAAGACGTGAGAGACATTTACAAGCGATATACAAACGACGTGTCACTTCAGGAGCACCTATTCCGAGTCGAGAACTGCAAATATTGAATTCCTAGGCCATCAGGAAATTTCTAGTCCACTTACATAAAATGCTGAACACCTCTAATTGCAATTAATTCCATATCTTCTGGAACATTCTTCATTTCACTTGCACAGTACGCCAATTGCTCATCTAGTTGTAGAATCGCCACGTTGCAGTCCGCCAGAATCCGCCCGTATTCTTCTTGAAGATTCTGAAGGTGTCTGTACTCTTGTACAGTATCCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATCCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCT</canonical>
            <polymorphic>AATCGGATGGTCCTCTCCATGACTTTCCAAGCTAGACTGGACAGCGAGTTTCGGGATGTCCATAGAATACTTTTGAAGACGTGAGAGACATTTACAAGCGATATACAAACGACGTGTCACTTCAGGAGCACCTATTCCGAGTCGAGAACTGCAAATATTGAATTCCTAGGCCATCAGGAAATTTCTAGTCCACTTACATAAAATGCTGAACACCTCTAATTGCAATTAATTCCATATCTTCTGGAACATTCTTCATTTCACTTGCACAGTACGCCAATTGCTCATCTAGTTGTAGAATCGCCACGTTGCAGTCCGCCAGAATCCGCCCGTATTCTTCTTGAAGATTCTGAAGGTGTCTGTACTCTTGTACAGTATCCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCAYCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATCCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGAAGGTGTCTGTACTCTTGT</pcr_primer_p1>
		<pcr_primer_p2>ACTTGACTGGATTAGCTTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTGAAGGTGTCTGTACTCTTGTACAGTATCCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGT</canonical_amplicon>
		<polymorphic_amplicon>TCTGAAGGTGTCTGTACTCTTGTACAGTATCCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCAYCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb692</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1022056</contig_pos>
        <strand>+</strand>
        <context>AAGTCGAGAT[C/T]CTCGTTCAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGAT</left_flank>
        <right_flank>CTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATACAAACGACGTGTCACTTCAGGAGCACCTATTCCGAGTCGAGAACTGCAAATATTGAATTCCTAGGCCATCAGGAAATTTCTAGTCCACTTACATAAAATGCTGAACACCTCTAATTGCAATTAATTCCATATCTTCTGGAACATTCTTCATTTCACTTGCACAGTACGCCAATTGCTCATCTAGTTGTAGAATCGCCACGTTGCAGTCCGCCAGAATCCGCCCGTATTCTTCTTGAAGATTCTGAAGGTGTCTGTACTCTTGTACAGTATCCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATCCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAAAAGACTTACATTCTTACAATACTGTCTGTCCCTGGACCTCAACACCGCCTGA</canonical>
            <polymorphic>ATACAAACGACGTGTCACTTCAGGAGCACCTATTCCGAGTCGAGAACTGCAAATATTGAATTCCTAGGCCATCAGGAAATTTCTAGTCCACTTACATAAAATGCTGAACACCTCTAATTGCAATTAATTCCATATCTTCTGGAACATTCTTCATTTCACTTGCACAGTACGCCAATTGCTCATCTAGTTGTAGAATCGCCACGTTGCAGTCCGCCAGAATCCGCCCGTATTCTTCTTGAAGATTCTGAAGGTGTCTGTACTCTTGTACAGTATCCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATYCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAAAAGACTTACATTCTTACAATACTGTCTGTCCCTGGACCTCAACACCGCCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>504 423 73</canonical_bands>
                <polymorphic_bands>577 423</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCTNNNNNAGG</site>
                <isoschizomers>
                    <enzyme>BstENI</enzyme>
                    <enzyme>EcoNI</enzyme>
                    <enzyme>XagI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTACCTGCTCAAAAGGTATC</pcr_primer_p1>
		<pcr_primer_p2>CTTCTTTCCAGACCACAATATC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATCCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAG</canonical_amplicon>
		<polymorphic_amplicon>ACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATYCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb693</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1022189</contig_pos>
        <strand>+</strand>
        <context>GAGATTGGCG[C/T]CAGAGGAGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCG</left_flank>
        <right_flank>CAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTTCTGGAACATTCTTCATTTCACTTGCACAGTACGCCAATTGCTCATCTAGTTGTAGAATCGCCACGTTGCAGTCCGCCAGAATCCGCCCGTATTCTTCTTGAAGATTCTGAAGGTGTCTGTACTCTTGTACAGTATCCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATCCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAAAAGACTTACATTCTTACAATACTGTCTGTCCCTGGACCTCAACACCGCCTGATTCCCATCAAACACCACATGACAAGTAGAAGCACAGGAATGATTGTGCGTGGCTAGCCCCACATACATTCCACTTCCAATAGGTTCCACCCGTTTTTCAGCGATTATTCCAAACGAGTTGCACAACACACTGC</canonical>
            <polymorphic>ATCTTCTGGAACATTCTTCATTTCACTTGCACAGTACGCCAATTGCTCATCTAGTTGTAGAATCGCCACGTTGCAGTCCGCCAGAATCCGCCCGTATTCTTCTTGAAGATTCTGAAGGTGTCTGTACTCTTGTACAGTATCCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATCCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGYCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAAAAGACTTACATTCTTACAATACTGTCTGTCCCTGGACCTCAACACCGCCTGATTCCCATCAAACACCACATGACAAGTAGAAGCACAGGAATGATTGTGCGTGGCTAGCCCCACATACATTCCACTTCCAATAGGTTCCACCCGTTTTTCAGCGATTATTCCAAACGAGTTGCACAACACACTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>504 299 197</canonical_bands>
                <polymorphic_bands>701 299</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>385 259 240 57 54 5</canonical_bands>
                <polymorphic_bands>385 316 240 54 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCGCC</site>
                <isoschizomers>
                    <enzyme>BbeI</enzyme>
                    <enzyme>EgeI</enzyme>
                    <enzyme>EheI</enzyme>
                    <enzyme>KasI</enzyme>
                    <enzyme>Mly113I</enzyme>
                    <enzyme>NarI</enzyme>
                    <enzyme>SfoI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>301 276 197 177 49</canonical_bands>
                <polymorphic_bands>374 301 276 49</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>500 384 116</canonical_bands>
                <polymorphic_bands>616 384</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCGAGAGACATAGGATATTGT</pcr_primer_p1>
		<pcr_primer_p2>TTGTTTCTGCTATTTTCCTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>368</pcr_amplicon_size>
		<canonical_amplicon>TCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAA</canonical_amplicon>
		<polymorphic_amplicon>TCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGYCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb694</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1022216</contig_pos>
        <strand></strand>
        <context>GCGAGGGTCA[G/T]KTTCCAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCA</left_flank>
        <right_flank>ATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCACAGTACGCCAATTGCTCATCTAGTTGTAGAATCGCCACGTTGCAGTCCGCCAGAATCCGCCCGTATTCTTCTTGAAGATTCTGAAGGTGTCTGTACTCTTGTACAGTATCCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATCCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAAAAGACTTACATTCTTACAATACTGTCTGTCCCTGGACCTCAACACCGCCTGATTCCCATCAAACACCACATGACAAGTAGAAGCACAGGAATGATTGTGCGTGGCTAGCCCCACATACATTCCACTTCCAATAGGTTCCACCCGTTTTTCAGCGATTATTCCAAACGAGTTGCACAACACACTGCAAATGATTGCGATCATTTTGTTGTTGT</canonical>
            <polymorphic>TGCACAGTACGCCAATTGCTCATCTAGTTGTAGAATCGCCACGTTGCAGTCCGCCAGAATCCGCCCGTATTCTTCTTGAAGATTCTGAAGGTGTCTGTACTCTTGTACAGTATCCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATCCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAKATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAAAAGACTTACATTCTTACAATACTGTCTGTCCCTGGACCTCAACACCGCCTGATTCCCATCAAACACCACATGACAAGTAGAAGCACAGGAATGATTGTGCGTGGCTAGCCCCACATACATTCCACTTCCAATAGGTTCCACCCGTTTTTCAGCGATTATTCCAAACGAGTTGCACAACACACTGCAAATGATTGCGATCATTTTGTTGTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>339 301 161 118 33 24 24</canonical_bands>
                <polymorphic_bands>640 161 118 33 24 24</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>501 337 86 76</canonical_bands>
                <polymorphic_bands>577 337 86</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>419 339 161 33 24 24</canonical_bands>
                <polymorphic_bands>758 161 33 24 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATATTGTGGTCTGGAAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTGTTTCTGCTATTTTCCTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>354</pcr_amplicon_size>
		<canonical_amplicon>GATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAA</canonical_amplicon>
		<polymorphic_amplicon>GATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAKATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb695</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1022230</contig_pos>
        <strand></strand>
        <context>CCAAAATAAC[T/C]YCGTTAGCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAAC</left_flank>
        <right_flank>GCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGCTCATCTAGTTGTAGAATCGCCACGTTGCAGTCCGCCAGAATCCGCCCGTATTCTTCTTGAAGATTCTGAAGGTGTCTGTACTCTTGTACAGTATCCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATCCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAAAAGACTTACATTCTTACAATACTGTCTGTCCCTGGACCTCAACACCGCCTGATTCCCATCAAACACCACATGACAAGTAGAAGCACAGGAATGATTGTGCGTGGCTAGCCCCACATACATTCCACTTCCAATAGGTTCCACCCGTTTTTCAGCGATTATTCCAAACGAGTTGCACAACACACTGCAAATGATTGCGATCATTTTGTTGTTGTCCATTGATTCAGGG</canonical>
            <polymorphic>ATTGCTCATCTAGTTGTAGAATCGCCACGTTGCAGTCCGCCAGAATCCGCCCGTATTCTTCTTGAAGATTCTGAAGGTGTCTGTACTCTTGTACAGTATCCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATCCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACYGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAAAAGACTTACATTCTTACAATACTGTCTGTCCCTGGACCTCAACACCGCCTGATTCCCATCAAACACCACATGACAAGTAGAAGCACAGGAATGATTGTGCGTGGCTAGCCCCACATACATTCCACTTCCAATAGGTTCCACCCGTTTTTCAGCGATTATTCCAAACGAGTTGCACAACACACTGCAAATGATTGCGATCATTTTGTTGTTGTCCATTGATTCAGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATATTGTGGTCTGGAAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTGTTTCTGCTATTTTCCTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>354</pcr_amplicon_size>
		<canonical_amplicon>GATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAA</canonical_amplicon>
		<polymorphic_amplicon>GATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACYGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb696</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1022255</contig_pos>
        <strand>+</strand>
        <context>GCCACAAGGT[A/G]CATATAGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGT</left_flank>
        <right_flank>CATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGC</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACGTTGCAGTCCGCCAGAATCCGCCCGTATTCTTCTTGAAGATTCTGAAGGTGTCTGTACTCTTGTACAGTATCCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATCCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAAAAGACTTACATTCTTACAATACTGTCTGTCCCTGGACCTCAACACCGCCTGATTCCCATCAAACACCACATGACAAGTAGAAGCACAGGAATGATTGTGCGTGGCTAGCCCCACATACATTCCACTTCCAATAGGTTCCACCCGTTTTTCAGCGATTATTCCAAACGAGTTGCACAACACACTGCAAATGATTGCGATCATTTTGTTGTTGTCCATTGATTCAGGGAAGATGTCTGAAAGAAATTGTGGTT</canonical>
            <polymorphic>CACGTTGCAGTCCGCCAGAATCCGCCCGTATTCTTCTTGAAGATTCTGAAGGTGTCTGTACTCTTGTACAGTATCCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATCCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTRCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAAAAGACTTACATTCTTACAATACTGTCTGTCCCTGGACCTCAACACCGCCTGATTCCCATCAAACACCACATGACAAGTAGAAGCACAGGAATGATTGTGCGTGGCTAGCCCCACATACATTCCACTTCCAATAGGTTCCACCCGTTTTTCAGCGATTATTCCAAACGAGTTGCACAACACACTGCAAATGATTGCGATCATTTTGTTGTTGTCCATTGATTCAGGGAAGATGTCTGAAAGAAATTGTGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACNNNGTG</site>
                <isoschizomers>
                    <enzyme>AdeI</enzyme>
                    <enzyme>DraIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>493 394 67 27 12 7</canonical_bands>
                <polymorphic_bands>520 394 67 12 7</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>125 100 89 67 52 43 42 40 36 34 34 32 30 24 23 21 20 17 17 16 15 14 12 11 10 10 8 7 7 7 5 4 4 4 3 3 3 3 2 2 2 2</canonical_bands>
                <polymorphic_bands>125 100 89 67 52 43 42 40 36 34 34 32 30 24 24 23 21 20 17 16 15 14 12 11 10 10 8 7 7 5 4 4 4 3 3 3 3 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATATTGTGGTCTGGAAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTGTTTCTGCTATTTTCCTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>354</pcr_amplicon_size>
		<canonical_amplicon>GATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAA</canonical_amplicon>
		<polymorphic_amplicon>GATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTRCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb697</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1022266</contig_pos>
        <strand>+</strand>
        <context>CATATAGAAA[A/G]GAAGTGGTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAA</left_flank>
        <right_flank>GAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGG</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGCCAGAATCCGCCCGTATTCTTCTTGAAGATTCTGAAGGTGTCTGTACTCTTGTACAGTATCCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATCCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAAAAGACTTACATTCTTACAATACTGTCTGTCCCTGGACCTCAACACCGCCTGATTCCCATCAAACACCACATGACAAGTAGAAGCACAGGAATGATTGTGCGTGGCTAGCCCCACATACATTCCACTTCCAATAGGTTCCACCCGTTTTTCAGCGATTATTCCAAACGAGTTGCACAACACACTGCAAATGATTGCGATCATTTTGTTGTTGTCCATTGATTCAGGGAAGATGTCTGAAAGAAATTGTGGTTTTACTGCCAAA</canonical>
            <polymorphic>CCGCCAGAATCCGCCCGTATTCTTCTTGAAGATTCTGAAGGTGTCTGTACTCTTGTACAGTATCCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATCCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAARGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAAAAGACTTACATTCTTACAATACTGTCTGTCCCTGGACCTCAACACCGCCTGATTCCCATCAAACACCACATGACAAGTAGAAGCACAGGAATGATTGTGCGTGGCTAGCCCCACATACATTCCACTTCCAATAGGTTCCACCCGTTTTTCAGCGATTATTCCAAACGAGTTGCACAACACACTGCAAATGATTGCGATCATTTTGTTGTTGTCCATTGATTCAGGGAAGATGTCTGAAAGAAATTGTGGTTTTACTGCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATATTGTGGTCTGGAAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTGTTTCTGCTATTTTCCTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>354</pcr_amplicon_size>
		<canonical_amplicon>GATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAA</canonical_amplicon>
		<polymorphic_amplicon>GATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAARGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb698</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1022281</contig_pos>
        <strand>+</strand>
        <context>TGGTGGTGGG[C/T]GCACACAAGR</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGG</left_flank>
        <right_flank>GCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTATTCTTCTTGAAGATTCTGAAGGTGTCTGTACTCTTGTACAGTATCCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATCCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAAAAGACTTACATTCTTACAATACTGTCTGTCCCTGGACCTCAACACCGCCTGATTCCCATCAAACACCACATGACAAGTAGAAGCACAGGAATGATTGTGCGTGGCTAGCCCCACATACATTCCACTTCCAATAGGTTCCACCCGTTTTTCAGCGATTATTCCAAACGAGTTGCACAACACACTGCAAATGATTGCGATCATTTTGTTGTTGTCCATTGATTCAGGGAAGATGTCTGAAAGAAATTGTGGTTTTACTGCCAAATTCATAGGCTAAAAG</canonical>
            <polymorphic>CGTATTCTTCTTGAAGATTCTGAAGGTGTCTGTACTCTTGTACAGTATCCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATCCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGYGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAAAAGACTTACATTCTTACAATACTGTCTGTCCCTGGACCTCAACACCGCCTGATTCCCATCAAACACCACATGACAAGTAGAAGCACAGGAATGATTGTGCGTGGCTAGCCCCACATACATTCCACTTCCAATAGGTTCCACCCGTTTTTCAGCGATTATTCCAAACGAGTTGCACAACACACTGCAAATGATTGCGATCATTTTGTTGTTGTCCATTGATTCAGGGAAGATGTCTGAAAGAAATTGTGGTTTTACTGCCAAATTCATAGGCTAAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>497 391 112</canonical_bands>
                <polymorphic_bands>888 112</polymorphic_bands>
            </assay>
            <assay>
                <site>GTGCAC</site>
                <isoschizomers>
                    <enzyme>Alw44I</enzyme>
                    <enzyme>ApaLI</enzyme>
                    <enzyme>VneI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>497 391 112</canonical_bands>
                <polymorphic_bands>888 112</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>474 394 93 27 12</canonical_bands>
                <polymorphic_bands>474 421 93 12</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>125 100 89 67 43 42 40 36 34 34 32 30 29 28 24 23 21 20 17 17 16 15 14 12 11 10 10 8 7 7 7 5 4 4 4 3 3 3 2 2 2</canonical_bands>
                <polymorphic_bands>125 100 89 67 43 42 40 36 34 34 32 30 29 28 24 23 21 20 17 17 16 15 14 12 11 10 10 8 7 7 7 6 5 4 4 3 3 3 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>390 314 187 58 51</canonical_bands>
                <polymorphic_bands>390 314 245 51</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATATTGTGGTCTGGAAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTGTTTCTGCTATTTTCCTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>354</pcr_amplicon_size>
		<canonical_amplicon>GATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAA</canonical_amplicon>
		<polymorphic_amplicon>GATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGYGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb699</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1022291</contig_pos>
        <strand>+</strand>
        <context>YGCACACAAG[A/G]GAGTGGCGCR</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAG</left_flank>
        <right_flank>GAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAA</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAGATTCTGAAGGTGTCTGTACTCTTGTACAGTATCCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATCCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAAAAGACTTACATTCTTACAATACTGTCTGTCCCTGGACCTCAACACCGCCTGATTCCCATCAAACACCACATGACAAGTAGAAGCACAGGAATGATTGTGCGTGGCTAGCCCCACATACATTCCACTTCCAATAGGTTCCACCCGTTTTTCAGCGATTATTCCAAACGAGTTGCACAACACACTGCAAATGATTGCGATCATTTTGTTGTTGTCCATTGATTCAGGGAAGATGTCTGAAAGAAATTGTGGTTTTACTGCCAAATTCATAGGCTAAAAGGCCTTACTGT</canonical>
            <polymorphic>TTGAAGATTCTGAAGGTGTCTGTACTCTTGTACAGTATCCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATCCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGRGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAAAAGACTTACATTCTTACAATACTGTCTGTCCCTGGACCTCAACACCGCCTGATTCCCATCAAACACCACATGACAAGTAGAAGCACAGGAATGATTGTGCGTGGCTAGCCCCACATACATTCCACTTCCAATAGGTTCCACCCGTTTTTCAGCGATTATTCCAAACGAGTTGCACAACACACTGCAAATGATTGCGATCATTTTGTTGTTGTCCATTGATTCAGGGAAGATGTCTGAAAGAAATTGTGGTTTTACTGCCAAATTCATAGGCTAAAAGGCCTTACTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATATTGTGGTCTGGAAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTGTTTCTGCTATTTTCCTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>354</pcr_amplicon_size>
		<canonical_amplicon>GATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAA</canonical_amplicon>
		<polymorphic_amplicon>GATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGRGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb700</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1022301</contig_pos>
        <strand>+</strand>
        <context>RGAGTGGCGC[A/G]GCGCTAATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGC</left_flank>
        <right_flank>GCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAGGTGTCTGTACTCTTGTACAGTATCCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATCCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAAAAGACTTACATTCTTACAATACTGTCTGTCCCTGGACCTCAACACCGCCTGATTCCCATCAAACACCACATGACAAGTAGAAGCACAGGAATGATTGTGCGTGGCTAGCCCCACATACATTCCACTTCCAATAGGTTCCACCCGTTTTTCAGCGATTATTCCAAACGAGTTGCACAACACACTGCAAATGATTGCGATCATTTTGTTGTTGTCCATTGATTCAGGGAAGATGTCTGAAAGAAATTGTGGTTTTACTGCCAAATTCATAGGCTAAAAGGCCTTACTGTGTCCAGAAGC</canonical>
            <polymorphic>TGAAGGTGTCTGTACTCTTGTACAGTATCCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATCCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCRGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAAAAGACTTACATTCTTACAATACTGTCTGTCCCTGGACCTCAACACCGCCTGATTCCCATCAAACACCACATGACAAGTAGAAGCACAGGAATGATTGTGCGTGGCTAGCCCCACATACATTCCACTTCCAATAGGTTCCACCCGTTTTTCAGCGATTATTCCAAACGAGTTGCACAACACACTGCAAATGATTGCGATCATTTTGTTGTTGTCCATTGATTCAGGGAAGATGTCTGAAAGAAATTGTGGTTTTACTGCCAAATTCATAGGCTAAAAGGCCTTACTGTGTCCAGAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCGCT</site>
                <isoschizomers>
                    <enzyme>AfeI</enzyme>
                    <enzyme>Aor51HI</enzyme>
                    <enzyme>Eco47III</enzyme>
                    <enzyme>FunI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>496 388 116</canonical_bands>
                <polymorphic_bands>612 388</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATATTGTGGTCTGGAAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTGTTTCTGCTATTTTCCTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>354</pcr_amplicon_size>
		<canonical_amplicon>GATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAA</canonical_amplicon>
		<polymorphic_amplicon>GATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCRGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb701</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1024111</contig_pos>
        <strand>+</strand>
        <context>GYTCCAAGAG[C/T]ATTTTGAAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACACTGAAAAACGAAATTTGGTGTCTGAAATGCCCAAAAGTTCCAAGAG</left_flank>
        <right_flank>ATTTTGAAGGTTTGTCCTATTTTTTGAAACTGTTAACTTTGAGCTCAATT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGGTTACTGTAGGAAGGAGGGGTACGGTAGAGCGCGTTTGTCAAAATTACAAAAAAAAGAGGGTTACTGTAGGTTTTGGGTGAAATAGAAAGAAAAATCGATAGAAGAAGAGAGGGAGAGGAGGAAATCAAATTAGGGATTTGTTACTGAAACTCTTCAAACGCCCCCTAAAGTCAATAATGCTAAGTCCAATGGGGCGTACTTGCTTCACTTTCCCTCCAGGGAAGAAAAGGACATCCGGACCGACAGACCGACAGACAGATTTTCCCTCTGATTTCCCCGTATTTTTCTCTATGTCTTCTTGTATTTAGAAGAAGAGAATAGAATAAGAAAAAAGATAGAAATCTCCGCCAAATGTTCCCAATCTAGATGTCCCAAATTCTCTCTTCTTCAATTCACCAATTCTTTTTCCCTTAATTTCAAAAATAGCCAGAATAACCAAATATGGACACTGAAAAACGAAATTTGGTGTCTGAAATGCCCAAAAGTTCCAAGAGCATTTTGAAGGTTTGTCCTATTTTTTGAAACTGTTAACTTTGAGCTCAATTATCTCGATTTCTGTAACAGATATCAAAAAAGAGTCAACTGATAAAATATTGCTGATAATATGATAAATATTTTATCAGTTGACAAATTTTTGATATCTCTTATAGGAACCGAGATAATTGAGCTTAAATTTGATAGTTTGGGTGACGCCACCCACTTGTGGCGCGACCCCACCCACGCCACCCACTAGCGCGGCGCCACCGCCTTGTGTACGCCCACCACCACCGTTTCTCCTTGTGTACCTTGTGGCGCAATGGCTAACGCTCCTGTTTCGAAATCTGACACTCTCTGGTTCAACCCCACCGGCGCCAATCTCTTTTTGCTTCTTTTTCAGACAACTATTTTTCAGACAGAAGCCACCTACTTCTTCATACTGGAATTGGCATCGGCCTTCGTGCTCTCTGCCGCTCATAATGTCTTATATTTCGTGCTGGATATCAAGCTGATAGCCA</canonical>
            <polymorphic>GATGGTTACTGTAGGAAGGAGGGGTACGGTAGAGCGCGTTTGTCAAAATTACAAAAAAAAGAGGGTTACTGTAGGTTTTGGGTGAAATAGAAAGAAAAATCGATAGAAGAAGAGAGGGAGAGGAGGAAATCAAATTAGGGATTTGTTACTGAAACTCTTCAAACGCCCCCTAAAGTCAATAATGCTAAGTCCAATGGGGCGTACTTGCTTCACTTTCCCTCCAGGGAAGAAAAGGACATCCGGACCGACAGACCGACAGACAGATTTTCCCTCTGATTTCCCCGTATTTTTCTCTATGTCTTCTTGTATTTAGAAGAAGAGAATAGAATAAGAAAAAAGATAGAAATCTCCGCCAAATGTTCCCAATCTAGATGTCCCAAATTCTCTCTTCTTCAATTCACCAATTCTTTTTCCCTTAATTTCAAAAATAGCCAGAATAACCAAATATGGACACTGAAAAACGAAATTTGGTGTCTGAAATGCCCAAAAGTTCCAAGAGYATTTTGAAGGTTTGTCCTATTTTTTGAAACTGTTAACTTTGAGCTCAATTATCTCGATTTCTGTAACAGATATCAAAAAAGAGTCAACTGATAAAATATTGCTGATAATATGATAAATATTTTATCAGTTGACAAATTTTTGATATCTCTTATAGGAACCGAGATAATTGAGCTTAAATTTGATAGTTTGGGTGACGCCACCCACTTGTGGCGCGACCCCACCCACGCCACCCACTAGCGCGGCGCCACCGCCTTGTGTACGCCCACCACCACCGTTTCTCCTTGTGTACCTTGTGGCGCAATGGCTAACGCTCCTGTTTCGAAATCTGACACTCTCTGGTTCAACCCCACCGGCGCCAATCTCTTTTTGCTTCTTTTTCAGACAACTATTTTTCAGACAGAAGCCACCTACTTCTTCATACTGGAATTGGCATCGGCCTTCGTGCTCTCTGCCGCTCATAATGTCTTATATTTCGTGCTGGATATCAAGCTGATAGCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGACACTGAAAAACGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CACAAGGTACACAAGGAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>349</pcr_amplicon_size>
		<canonical_amplicon>TGGACACTGAAAAACGAAATTTGGTGTCTGAAATGCCCAAAAGTTCCAAGAGCATTTTGAAGGTTTGTCCTATTTTTTGAAACTGTTAACTTTGAGCTCAATTATCTCGATTTCTGTAACAGATATCAAAAAAGAGTCAACTGATAAAATATTGCTGATAATATGATAAATATTTTATCAGTTGACAAATTTTTGATATCTCTTATAGGAACCGAGATAATTGAGCTTAAATTTGATAGTTTGGGTGACGCCACCCACTTGTGGCGCGACCCCACCCACGCCACCCACTAGCGCGGCGCCACCGCCTTGTGTACGCCCACCACCACCGTTTCTCCTTGTGTACCTTGTG</canonical_amplicon>
		<polymorphic_amplicon>TGGACACTGAAAAACGAAATTTGGTGTCTGAAATGCCCAAAAGTTCCAAGAGYATTTTGAAGGTTTGTCCTATTTTTTGAAACTGTTAACTTTGAGCTCAATTATCTCGATTTCTGTAACAGATATCAAAAAAGAGTCAACTGATAAAATATTGCTGATAATATGATAAATATTTTATCAGTTGACAAATTTTTGATATCTCTTATAGGAACCGAGATAATTGAGCTTAAATTTGATAGTTTGGGTGACGCCACCCACTTGTGGCGCGACCCCACCCACGCCACCCACTAGCGCGGCGCCACCGCCTTGTGTACGCCCACCACCACCGTTTCTCCTTGTGTACCTTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb702</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1024102</contig_pos>
        <strand>+</strand>
        <context>WGCCCAAAAG[C/T]TCCAAGAGYA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAAATATGGACACTGAAAAACGAAATTTGGTGTCTGAAATGCCCAAAAG</left_flank>
        <right_flank>TCCAAGAGCATTTTGAAGGTTTGTCCTATTTTTTGAAACTGTTAACTTTG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGATAGTGGATGGTTACTGTAGGAAGGAGGGGTACGGTAGAGCGCGTTTGTCAAAATTACAAAAAAAAGAGGGTTACTGTAGGTTTTGGGTGAAATAGAAAGAAAAATCGATAGAAGAAGAGAGGGAGAGGAGGAAATCAAATTAGGGATTTGTTACTGAAACTCTTCAAACGCCCCCTAAAGTCAATAATGCTAAGTCCAATGGGGCGTACTTGCTTCACTTTCCCTCCAGGGAAGAAAAGGACATCCGGACCGACAGACCGACAGACAGATTTTCCCTCTGATTTCCCCGTATTTTTCTCTATGTCTTCTTGTATTTAGAAGAAGAGAATAGAATAAGAAAAAAGATAGAAATCTCCGCCAAATGTTCCCAATCTAGATGTCCCAAATTCTCTCTTCTTCAATTCACCAATTCTTTTTCCCTTAATTTCAAAAATAGCCAGAATAACCAAATATGGACACTGAAAAACGAAATTTGGTGTCTGAAATGCCCAAAAGTTCCAAGAGCATTTTGAAGGTTTGTCCTATTTTTTGAAACTGTTAACTTTGAGCTCAATTATCTCGATTTCTGTAACAGATATCAAAAAAGAGTCAACTGATAAAATATTGCTGATAATATGATAAATATTTTATCAGTTGACAAATTTTTGATATCTCTTATAGGAACCGAGATAATTGAGCTTAAATTTGATAGTTTGGGTGACGCCACCCACTTGTGGCGCGACCCCACCCACGCCACCCACTAGCGCGGCGCCACCGCCTTGTGTACGCCCACCACCACCGTTTCTCCTTGTGTACCTTGTGGCGCAATGGCTAACGCTCCTGTTTCGAAATCTGACACTCTCTGGTTCAACCCCACCGGCGCCAATCTCTTTTTGCTTCTTTTTCAGACAACTATTTTTCAGACAGAAGCCACCTACTTCTTCATACTGGAATTGGCATCGGCCTTCGTGCTCTCTGCCGCTCATAATGTCTTATATTTCGTGCTGGATATCAAGC</canonical>
            <polymorphic>AAGATAGTGGATGGTTACTGTAGGAAGGAGGGGTACGGTAGAGCGCGTTTGTCAAAATTACAAAAAAAAGAGGGTTACTGTAGGTTTTGGGTGAAATAGAAAGAAAAATCGATAGAAGAAGAGAGGGAGAGGAGGAAATCAAATTAGGGATTTGTTACTGAAACTCTTCAAACGCCCCCTAAAGTCAATAATGCTAAGTCCAATGGGGCGTACTTGCTTCACTTTCCCTCCAGGGAAGAAAAGGACATCCGGACCGACAGACCGACAGACAGATTTTCCCTCTGATTTCCCCGTATTTTTCTCTATGTCTTCTTGTATTTAGAAGAAGAGAATAGAATAAGAAAAAAGATAGAAATCTCCGCCAAATGTTCCCAATCTAGATGTCCCAAATTCTCTCTTCTTCAATTCACCAATTCTTTTTCCCTTAATTTCAAAAATAGCCAGAATAACCAAATATGGACACTGAAAAACGAAATTTGGTGTCTGAAATGCCCAAAAGYTCCAAGAGCATTTTGAAGGTTTGTCCTATTTTTTGAAACTGTTAACTTTGAGCTCAATTATCTCGATTTCTGTAACAGATATCAAAAAAGAGTCAACTGATAAAATATTGCTGATAATATGATAAATATTTTATCAGTTGACAAATTTTTGATATCTCTTATAGGAACCGAGATAATTGAGCTTAAATTTGATAGTTTGGGTGACGCCACCCACTTGTGGCGCGACCCCACCCACGCCACCCACTAGCGCGGCGCCACCGCCTTGTGTACGCCCACCACCACCGTTTCTCCTTGTGTACCTTGTGGCGCAATGGCTAACGCTCCTGTTTCGAAATCTGACACTCTCTGGTTCAACCCCACCGGCGCCAATCTCTTTTTGCTTCTTTTTCAGACAACTATTTTTCAGACAGAAGCCACCTACTTCTTCATACTGGAATTGGCATCGGCCTTCGTGCTCTCTGCCGCTCATAATGTCTTATATTTCGTGCTGGATATCAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAACCAAATATGGACACTGAAA</pcr_primer_p1>
		<pcr_primer_p2>CACAAGGTACACAAGGAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>360</pcr_amplicon_size>
		<canonical_amplicon>ATAACCAAATATGGACACTGAAAAACGAAATTTGGTGTCTGAAATGCCCAAAAGTTCCAAGAGCATTTTGAAGGTTTGTCCTATTTTTTGAAACTGTTAACTTTGAGCTCAATTATCTCGATTTCTGTAACAGATATCAAAAAAGAGTCAACTGATAAAATATTGCTGATAATATGATAAATATTTTATCAGTTGACAAATTTTTGATATCTCTTATAGGAACCGAGATAATTGAGCTTAAATTTGATAGTTTGGGTGACGCCACCCACTTGTGGCGCGACCCCACCCACGCCACCCACTAGCGCGGCGCCACCGCCTTGTGTACGCCCACCACCACCGTTTCTCCTTGTGTACCTTGTG</canonical_amplicon>
		<polymorphic_amplicon>ATAACCAAATATGGACACTGAAAAACGAAATTTGGTGTCTGAAATGCCCAAAAGYTCCAAGAGCATTTTGAAGGTTTGTCCTATTTTTTGAAACTGTTAACTTTGAGCTCAATTATCTCGATTTCTGTAACAGATATCAAAAAAGAGTCAACTGATAAAATATTGCTGATAATATGATAAATATTTTATCAGTTGACAAATTTTTGATATCTCTTATAGGAACCGAGATAATTGAGCTTAAATTTGATAGTTTGGGTGACGCCACCCACTTGTGGCGCGACCCCACCCACGCCACCCACTAGCGCGGCGCCACCGCCTTGTGTACGCCCACCACCACCGTTTCTCCTTGTGTACCTTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb703</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1024092</contig_pos>
        <strand>+</strand>
        <context>GTGTCTGAAA[A/T]GCCCAAAAGY</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCCAGAATAACCAAATATGGACACTGAAAAACGAAATTTGGTGTCTGAAA</left_flank>
        <right_flank>GCCCAAAAGTTCCAAGAGCATTTTGAAGGTTTGTCCTATTTTTTGAAACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATAAGAAAGATAGTGGATGGTTACTGTAGGAAGGAGGGGTACGGTAGAGCGCGTTTGTCAAAATTACAAAAAAAAGAGGGTTACTGTAGGTTTTGGGTGAAATAGAAAGAAAAATCGATAGAAGAAGAGAGGGAGAGGAGGAAATCAAATTAGGGATTTGTTACTGAAACTCTTCAAACGCCCCCTAAAGTCAATAATGCTAAGTCCAATGGGGCGTACTTGCTTCACTTTCCCTCCAGGGAAGAAAAGGACATCCGGACCGACAGACCGACAGACAGATTTTCCCTCTGATTTCCCCGTATTTTTCTCTATGTCTTCTTGTATTTAGAAGAAGAGAATAGAATAAGAAAAAAGATAGAAATCTCCGCCAAATGTTCCCAATCTAGATGTCCCAAATTCTCTCTTCTTCAATTCACCAATTCTTTTTCCCTTAATTTCAAAAATAGCCAGAATAACCAAATATGGACACTGAAAAACGAAATTTGGTGTCTGAAATGCCCAAAAGTTCCAAGAGCATTTTGAAGGTTTGTCCTATTTTTTGAAACTGTTAACTTTGAGCTCAATTATCTCGATTTCTGTAACAGATATCAAAAAAGAGTCAACTGATAAAATATTGCTGATAATATGATAAATATTTTATCAGTTGACAAATTTTTGATATCTCTTATAGGAACCGAGATAATTGAGCTTAAATTTGATAGTTTGGGTGACGCCACCCACTTGTGGCGCGACCCCACCCACGCCACCCACTAGCGCGGCGCCACCGCCTTGTGTACGCCCACCACCACCGTTTCTCCTTGTGTACCTTGTGGCGCAATGGCTAACGCTCCTGTTTCGAAATCTGACACTCTCTGGTTCAACCCCACCGGCGCCAATCTCTTTTTGCTTCTTTTTCAGACAACTATTTTTCAGACAGAAGCCACCTACTTCTTCATACTGGAATTGGCATCGGCCTTCGTGCTCTCTGCCGCTCATAATGTCTTATATTTCGTGCTG</canonical>
            <polymorphic>AAAAATAAGAAAGATAGTGGATGGTTACTGTAGGAAGGAGGGGTACGGTAGAGCGCGTTTGTCAAAATTACAAAAAAAAGAGGGTTACTGTAGGTTTTGGGTGAAATAGAAAGAAAAATCGATAGAAGAAGAGAGGGAGAGGAGGAAATCAAATTAGGGATTTGTTACTGAAACTCTTCAAACGCCCCCTAAAGTCAATAATGCTAAGTCCAATGGGGCGTACTTGCTTCACTTTCCCTCCAGGGAAGAAAAGGACATCCGGACCGACAGACCGACAGACAGATTTTCCCTCTGATTTCCCCGTATTTTTCTCTATGTCTTCTTGTATTTAGAAGAAGAGAATAGAATAAGAAAAAAGATAGAAATCTCCGCCAAATGTTCCCAATCTAGATGTCCCAAATTCTCTCTTCTTCAATTCACCAATTCTTTTTCCCTTAATTTCAAAAATAGCCAGAATAACCAAATATGGACACTGAAAAACGAAATTTGGTGTCTGAAAWGCCCAAAAGTTCCAAGAGCATTTTGAAGGTTTGTCCTATTTTTTGAAACTGTTAACTTTGAGCTCAATTATCTCGATTTCTGTAACAGATATCAAAAAAGAGTCAACTGATAAAATATTGCTGATAATATGATAAATATTTTATCAGTTGACAAATTTTTGATATCTCTTATAGGAACCGAGATAATTGAGCTTAAATTTGATAGTTTGGGTGACGCCACCCACTTGTGGCGCGACCCCACCCACGCCACCCACTAGCGCGGCGCCACCGCCTTGTGTACGCCCACCACCACCGTTTCTCCTTGTGTACCTTGTGGCGCAATGGCTAACGCTCCTGTTTCGAAATCTGACACTCTCTGGTTCAACCCCACCGGCGCCAATCTCTTTTTGCTTCTTTTTCAGACAACTATTTTTCAGACAGAAGCCACCTACTTCTTCATACTGGAATTGGCATCGGCCTTCGTGCTCTCTGCCGCTCATAATGTCTTATATTTCGTGCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATAGCCAGAATAACCAAAT</pcr_primer_p1>
		<pcr_primer_p2>CACAAGGTACACAAGGAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>373</pcr_amplicon_size>
		<canonical_amplicon>AAAAATAGCCAGAATAACCAAATATGGACACTGAAAAACGAAATTTGGTGTCTGAAATGCCCAAAAGTTCCAAGAGCATTTTGAAGGTTTGTCCTATTTTTTGAAACTGTTAACTTTGAGCTCAATTATCTCGATTTCTGTAACAGATATCAAAAAAGAGTCAACTGATAAAATATTGCTGATAATATGATAAATATTTTATCAGTTGACAAATTTTTGATATCTCTTATAGGAACCGAGATAATTGAGCTTAAATTTGATAGTTTGGGTGACGCCACCCACTTGTGGCGCGACCCCACCCACGCCACCCACTAGCGCGGCGCCACCGCCTTGTGTACGCCCACCACCACCGTTTCTCCTTGTGTACCTTGTG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATAGCCAGAATAACCAAATATGGACACTGAAAAACGAAATTTGGTGTCTGAAAWGCCCAAAAGTTCCAAGAGCATTTTGAAGGTTTGTCCTATTTTTTGAAACTGTTAACTTTGAGCTCAATTATCTCGATTTCTGTAACAGATATCAAAAAAGAGTCAACTGATAAAATATTGCTGATAATATGATAAATATTTTATCAGTTGACAAATTTTTGATATCTCTTATAGGAACCGAGATAATTGAGCTTAAATTTGATAGTTTGGGTGACGCCACCCACTTGTGGCGCGACCCCACCCACGCCACCCACTAGCGCGGCGCCACCGCCTTGTGTACGCCCACCACCACCGTTTCTCCTTGTGTACCTTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb704</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1024015</contig_pos>
        <strand>+</strand>
        <context>CAATTCACCA[A/T]TTCTTTTTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAATGTTCCCAATCTAGATGTCCCAAATTCTCTCTTCTTCAATTCACCA</left_flank>
        <right_flank>TTCTTTTTCCCTTAATTTCAAAAATAGCCAGAATAACCAAATATGGACAC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGGTACCGGTAGGCAGGAGGAGTACGGTAGAAATGGTTACGGTAGGGAGGAGGTGTACGGTAGAGCGAGTTTGTCAAAAATAAGAAAGATAGTGGATGGTTACTGTAGGAAGGAGGGGTACGGTAGAGCGCGTTTGTCAAAATTACAAAAAAAAGAGGGTTACTGTAGGTTTTGGGTGAAATAGAAAGAAAAATCGATAGAAGAAGAGAGGGAGAGGAGGAAATCAAATTAGGGATTTGTTACTGAAACTCTTCAAACGCCCCCTAAAGTCAATAATGCTAAGTCCAATGGGGCGTACTTGCTTCACTTTCCCTCCAGGGAAGAAAAGGACATCCGGACCGACAGACCGACAGACAGATTTTCCCTCTGATTTCCCCGTATTTTTCTCTATGTCTTCTTGTATTTAGAAGAAGAGAATAGAATAAGAAAAAAGATAGAAATCTCCGCCAAATGTTCCCAATCTAGATGTCCCAAATTCTCTCTTCTTCAATTCACCAATTCTTTTTCCCTTAATTTCAAAAATAGCCAGAATAACCAAATATGGACACTGAAAAACGAAATTTGGTGTCTGAAATGCCCAAAAGTTCCAAGAGCATTTTGAAGGTTTGTCCTATTTTTTGAAACTGTTAACTTTGAGCTCAATTATCTCGATTTCTGTAACAGATATCAAAAAAGAGTCAACTGATAAAATATTGCTGATAATATGATAAATATTTTATCAGTTGACAAATTTTTGATATCTCTTATAGGAACCGAGATAATTGAGCTTAAATTTGATAGTTTGGGTGACGCCACCCACTTGTGGCGCGACCCCACCCACGCCACCCACTAGCGCGGCGCCACCGCCTTGTGTACGCCCACCACCACCGTTTCTCCTTGTGTACCTTGTGGCGCAATGGCTAACGCTCCTGTTTCGAAATCTGACACTCTCTGGTTCAACCCCACCGGCGCCAATCTCTTTTTGCTTCTTTTTCAGACAACTATTTTTCAGACAGAAG</canonical>
            <polymorphic>AATGGTACCGGTAGGCAGGAGGAGTACGGTAGAAATGGTTACGGTAGGGAGGAGGTGTACGGTAGAGCGAGTTTGTCAAAAATAAGAAAGATAGTGGATGGTTACTGTAGGAAGGAGGGGTACGGTAGAGCGCGTTTGTCAAAATTACAAAAAAAAGAGGGTTACTGTAGGTTTTGGGTGAAATAGAAAGAAAAATCGATAGAAGAAGAGAGGGAGAGGAGGAAATCAAATTAGGGATTTGTTACTGAAACTCTTCAAACGCCCCCTAAAGTCAATAATGCTAAGTCCAATGGGGCGTACTTGCTTCACTTTCCCTCCAGGGAAGAAAAGGACATCCGGACCGACAGACCGACAGACAGATTTTCCCTCTGATTTCCCCGTATTTTTCTCTATGTCTTCTTGTATTTAGAAGAAGAGAATAGAATAAGAAAAAAGATAGAAATCTCCGCCAAATGTTCCCAATCTAGATGTCCCAAATTCTCTCTTCTTCAATTCACCAWTTCTTTTTCCCTTAATTTCAAAAATAGCCAGAATAACCAAATATGGACACTGAAAAACGAAATTTGGTGTCTGAAATGCCCAAAAGTTCCAAGAGCATTTTGAAGGTTTGTCCTATTTTTTGAAACTGTTAACTTTGAGCTCAATTATCTCGATTTCTGTAACAGATATCAAAAAAGAGTCAACTGATAAAATATTGCTGATAATATGATAAATATTTTATCAGTTGACAAATTTTTGATATCTCTTATAGGAACCGAGATAATTGAGCTTAAATTTGATAGTTTGGGTGACGCCACCCACTTGTGGCGCGACCCCACCCACGCCACCCACTAGCGCGGCGCCACCGCCTTGTGTACGCCCACCACCACCGTTTCTCCTTGTGTACCTTGTGGCGCAATGGCTAACGCTCCTGTTTCGAAATCTGACACTCTCTGGTTCAACCCCACCGGCGCCAATCTCTTTTTGCTTCTTTTTCAGACAACTATTTTTCAGACAGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>247 228 142 88 86 82 47 31 15 15 11 8</canonical_bands>
                <polymorphic_bands>247 228 142 88 86 82 47 31 23 15 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCCCCGTATTTTTCTCTAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATAGGACAAACCTTCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTCCCCGTATTTTTCTCTATGTCTTCTTGTATTTAGAAGAAGAGAATAGAATAAGAAAAAAGATAGAAATCTCCGCCAAATGTTCCCAATCTAGATGTCCCAAATTCTCTCTTCTTCAATTCACCAATTCTTTTTCCCTTAATTTCAAAAATAGCCAGAATAACCAAATATGGACACTGAAAAACGAAATTTGGTGTCTGAAATGCCCAAAAGTTCCAAGAGCATTTTGAAGGTTTGTCCTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTCCCCGTATTTTTCTCTATGTCTTCTTGTATTTAGAAGAAGAGAATAGAATAAGAAAAAAGATAGAAATCTCCGCCAAATGTTCCCAATCTAGATGTCCCAAATTCTCTCTTCTTCAATTCACCAWTTCTTTTTCCCTTAATTTCAAAAATAGCCAGAATAACCAAATATGGACACTGAAAAACGAAATTTGGTGTCTGAAATGCCCAAAAGTTCCAAGAGCATTTTGAAGGTTTGTCCTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb705</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1023831</contig_pos>
        <strand>+</strand>
        <context>TCACTTTCCC[C/T]CCAGGGAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAAAGTCAATAATGCTAAGTCCAATGGGGCGTACTTGCTTCACTTTCCC</left_flank>
        <right_flank>CCAGGGAAGAAAAGGACATCCGGACCGACAGACCGACAGACAGATTTTCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCGAGAAGCACGTCGCACAGTAGGTGTCCTGGAATTCTGGGGAGAGGACGGCAGCGAGGGGTTTCTCACGGGCTACTGTGTACATTTTTCTGAAATAGGGTTACTGTAGGAGGATGGGGTACGGTAGAGCGAGTTTGTCAAAATAAATAAGAGCAAATAGATCTACGGTAGGGTATGGTAGAAATGGTACCGGTAGGCAGGAGGAGTACGGTAGAAATGGTTACGGTAGGGAGGAGGTGTACGGTAGAGCGAGTTTGTCAAAAATAAGAAAGATAGTGGATGGTTACTGTAGGAAGGAGGGGTACGGTAGAGCGCGTTTGTCAAAATTACAAAAAAAAGAGGGTTACTGTAGGTTTTGGGTGAAATAGAAAGAAAAATCGATAGAAGAAGAGAGGGAGAGGAGGAAATCAAATTAGGGATTTGTTACTGAAACTCTTCAAACGCCCCCTAAAGTCAATAATGCTAAGTCCAATGGGGCGTACTTGCTTCACTTTCCCTCCAGGGAAGAAAAGGACATCCGGACCGACAGACCGACAGACAGATTTTCCCTCTGATTTCCCCGTATTTTTCTCTATGTCTTCTTGTATTTAGAAGAAGAGAATAGAATAAGAAAAAAGATAGAAATCTCCGCCAAATGTTCCCAATCTAGATGTCCCAAATTCTCTCTTCTTCAATTCACCAATTCTTTTTCCCTTAATTTCAAAAATAGCCAGAATAACCAAATATGGACACTGAAAAACGAAATTTGGTGTCTGAAATGCCCAAAAGTTCCAAGAGCATTTTGAAGGTTTGTCCTATTTTTTGAAACTGTTAACTTTGAGCTCAATTATCTCGATTTCTGTAACAGATATCAAAAAAGAGTCAACTGATAAAATATTGCTGATAATATGATAAATATTTTATCAGTTGACAAATTTTTGATATCTCTTATAGGAACCGAGATAATTGAGCTTAAATTTGATAGTTTGGGTGACGCCACCCACTTGTGGCGCGACCCC</canonical>
            <polymorphic>TTCCGAGAAGCACGTCGCACAGTAGGTGTCCTGGAATTCTGGGGAGAGGACGGCAGCGAGGGGTTTCTCACGGGCTACTGTGTACATTTTTCTGAAATAGGGTTACTGTAGGAGGATGGGGTACGGTAGAGCGAGTTTGTCAAAATAAATAAGAGCAAATAGATCTACGGTAGGGTATGGTAGAAATGGTACCGGTAGGCAGGAGGAGTACGGTAGAAATGGTTACGGTAGGGAGGAGGTGTACGGTAGAGCGAGTTTGTCAAAAATAAGAAAGATAGTGGATGGTTACTGTAGGAAGGAGGGGTACGGTAGAGCGCGTTTGTCAAAATTACAAAAAAAAGAGGGTTACTGTAGGTTTTGGGTGAAATAGAAAGAAAAATCGATAGAAGAAGAGAGGGAGAGGAGGAAATCAAATTAGGGATTTGTTACTGAAACTCTTCAAACGCCCCCTAAAGTCAATAATGCTAAGTCCAATGGGGCGTACTTGCTTCACTTTCCCYCCAGGGAAGAAAAGGACATCCGGACCGACAGACCGACAGACAGATTTTCCCTCTGATTTCCCCGTATTTTTCTCTATGTCTTCTTGTATTTAGAAGAAGAGAATAGAATAAGAAAAAAGATAGAAATCTCCGCCAAATGTTCCCAATCTAGATGTCCCAAATTCTCTCTTCTTCAATTCACCAATTCTTTTTCCCTTAATTTCAAAAATAGCCAGAATAACCAAATATGGACACTGAAAAACGAAATTTGGTGTCTGAAATGCCCAAAAGTTCCAAGAGCATTTTGAAGGTTTGTCCTATTTTTTGAAACTGTTAACTTTGAGCTCAATTATCTCGATTTCTGTAACAGATATCAAAAAAGAGTCAACTGATAAAATATTGCTGATAATATGATAAATATTTTATCAGTTGACAAATTTTTGATATCTCTTATAGGAACCGAGATAATTGAGCTTAAATTTGATAGTTTGGGTGACGCCACCCACTTGTGGCGCGACCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAATTAGGGATTTGTTACTGAA</pcr_primer_p1>
		<pcr_primer_p2>GACATCTAGATTGGGAACATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAAATTAGGGATTTGTTACTGAAACTCTTCAAACGCCCCCTAAAGTCAATAATGCTAAGTCCAATGGGGCGTACTTGCTTCACTTTCCCTCCAGGGAAGAAAAGGACATCCGGACCGACAGACCGACAGACAGATTTTCCCTCTGATTTCCCCGTATTTTTCTCTATGTCTTCTTGTATTTAGAAGAAGAGAATAGAATAAGAAAAAAGATAGAAATCTCCGCCAAATGTTCCCAATCTAGATGTC</canonical_amplicon>
		<polymorphic_amplicon>CAAATTAGGGATTTGTTACTGAAACTCTTCAAACGCCCCCTAAAGTCAATAATGCTAAGTCCAATGGGGCGTACTTGCTTCACTTTCCCYCCAGGGAAGAAAAGGACATCCGGACCGACAGACCGACAGACAGATTTTCCCTCTGATTTCCCCGTATTTTTCTCTATGTCTTCTTGTATTTAGAAGAAGAGAATAGAATAAGAAAAAAGATAGAAATCTCCGCCAAATGTTCCCAATCTAGATGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb706</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1023614</contig_pos>
        <strand>+</strand>
        <context>AGATAGTGGA[G/T]GGTTACTGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAGGAGGTGTACGGTAGAGCGAGTTTGTCAAAAATAAGAAAGATAGTGGA</left_flank>
        <right_flank>GGTTACTGTAGGAAGGAGGGGTACGGTAGAGCGCGTTTGTCAAAATTACA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATATCCGGTCCATTTGAGTTTCCAATGGTATTCAAAAGCACTCTCACGCACAGCCTCATGGTTACTGTCATATTTTGCGCTGTTCCTCTCAAAATCTCGCATTCCAACTGATGCACGGTCTTCCAGTCCTTCCTCTGACACTTTAATGAGCAATACGACACTTGTGTACAATCGTCGCATGTGAGGATCTCTGAATCCAAATGGCTCGGATCGATTTCCGAGAAGCACGTCGCACAGTAGGTGTCCTGGAATTCTGGGGAGAGGACGGCAGCGAGGGGTTTCTCACGGGCTACTGTGTACATTTTTCTGAAATAGGGTTACTGTAGGAGGATGGGGTACGGTAGAGCGAGTTTGTCAAAATAAATAAGAGCAAATAGATCTACGGTAGGGTATGGTAGAAATGGTACCGGTAGGCAGGAGGAGTACGGTAGAAATGGTTACGGTAGGGAGGAGGTGTACGGTAGAGCGAGTTTGTCAAAAATAAGAAAGATAGTGGATGGTTACTGTAGGAAGGAGGGGTACGGTAGAGCGCGTTTGTCAAAATTACAAAAAAAAGAGGGTTACTGTAGGTTTTGGGTGAAATAGAAAGAAAAATCGATAGAAGAAGAGAGGGAGAGGAGGAAATCAAATTAGGGATTTGTTACTGAAACTCTTCAAACGCCCCCTAAAGTCAATAATGCTAAGTCCAATGGGGCGTACTTGCTTCACTTTCCCTCCAGGGAAGAAAAGGACATCCGGACCGACAGACCGACAGACAGATTTTCCCTCTGATTTCCCCGTATTTTTCTCTATGTCTTCTTGTATTTAGAAGAAGAGAATAGAATAAGAAAAAAGATAGAAATCTCCGCCAAATGTTCCCAATCTAGATGTCCCAAATTCTCTCTTCTTCAATTCACCAATTCTTTTTCCCTTAATTTCAAAAATAGCCAGAATAACCAAATATGGACACTGAAAAACGAAATTTGGTGTCTGAAATGCCCAAAAGTTCCAAGAGCATT</canonical>
            <polymorphic>CGATATCCGGTCCATTTGAGTTTCCAATGGTATTCAAAAGCACTCTCACGCACAGCCTCATGGTTACTGTCATATTTTGCGCTGTTCCTCTCAAAATCTCGCATTCCAACTGATGCACGGTCTTCCAGTCCTTCCTCTGACACTTTAATGAGCAATACGACACTTGTGTACAATCGTCGCATGTGAGGATCTCTGAATCCAAATGGCTCGGATCGATTTCCGAGAAGCACGTCGCACAGTAGGTGTCCTGGAATTCTGGGGAGAGGACGGCAGCGAGGGGTTTCTCACGGGCTACTGTGTACATTTTTCTGAAATAGGGTTACTGTAGGAGGATGGGGTACGGTAGAGCGAGTTTGTCAAAATAAATAAGAGCAAATAGATCTACGGTAGGGTATGGTAGAAATGGTACCGGTAGGCAGGAGGAGTACGGTAGAAATGGTTACGGTAGGGAGGAGGTGTACGGTAGAGCGAGTTTGTCAAAAATAAGAAAGATAGTGGAKGGTTACTGTAGGAAGGAGGGGTACGGTAGAGCGCGTTTGTCAAAATTACAAAAAAAAGAGGGTTACTGTAGGTTTTGGGTGAAATAGAAAGAAAAATCGATAGAAGAAGAGAGGGAGAGGAGGAAATCAAATTAGGGATTTGTTACTGAAACTCTTCAAACGCCCCCTAAAGTCAATAATGCTAAGTCCAATGGGGCGTACTTGCTTCACTTTCCCTCCAGGGAAGAAAAGGACATCCGGACCGACAGACCGACAGACAGATTTTCCCTCTGATTTCCCCGTATTTTTCTCTATGTCTTCTTGTATTTAGAAGAAGAGAATAGAATAAGAAAAAAGATAGAAATCTCCGCCAAATGTTCCCAATCTAGATGTCCCAAATTCTCTCTTCTTCAATTCACCAATTCTTTTTCCCTTAATTTCAAAAATAGCCAGAATAACCAAATATGGACACTGAAAAACGAAATTTGGTGTCTGAAATGCCCAAAAGTTCCAAGAGCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCGAGTTTGTCAAAATAAATA</pcr_primer_p1>
		<pcr_primer_p2>TTCTTTCTATTTCACCCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAGCGAGTTTGTCAAAATAAATAAGAGCAAATAGATCTACGGTAGGGTATGGTAGAAATGGTACCGGTAGGCAGGAGGAGTACGGTAGAAATGGTTACGGTAGGGAGGAGGTGTACGGTAGAGCGAGTTTGTCAAAAATAAGAAAGATAGTGGATGGTTACTGTAGGAAGGAGGGGTACGGTAGAGCGCGTTTGTCAAAATTACAAAAAAAAGAGGGTTACTGTAGGTTTTGGGTGAAATAGAAAGAA</canonical_amplicon>
		<polymorphic_amplicon>GAGCGAGTTTGTCAAAATAAATAAGAGCAAATAGATCTACGGTAGGGTATGGTAGAAATGGTACCGGTAGGCAGGAGGAGTACGGTAGAAATGGTTACGGTAGGGAGGAGGTGTACGGTAGAGCGAGTTTGTCAAAAATAAGAAAGATAGTGGAKGGTTACTGTAGGAAGGAGGGGTACGGTAGAGCGCGTTTGTCAAAATTACAAAAAAAAGAGGGTTACTGTAGGTTTTGGGTGAAATAGAAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb734</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1107039</contig_pos>
        <strand>+</strand>
        <context>GCATTTGGGA[A/G]TTGTTCAATG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATAATTACAAATCGGTATCGTACCAATTATGATTCGGGCGCATTTGGGA</left_flank>
        <right_flank>TTGTTCAATGCGACATTGATGGATTCCGAATGCCCGCCGTCGTTGGTTGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTACTTTTTGATTTATTTTTATTATCAATTTGGCTCAAAAACCGCTTTTTAAGCCTCTTACAAACCTCGATTTCCTCACCACCGCCATTTTTCCGCCATTCTCATCGATGGCAATGTGACGAGCGGTACGGCTGAGCATACCGCATCGGATTTTCTGCTTCTCCAAACAGAGACTCATCTGGAACATTGATATTTTGTTGAAAATCTGAAACTTTAAGACTGGAAAAATGGATGAAAAGATAGAAAATAGGTCAAAAATCAACCAGGAAAATCGAAAAATCGAGAAAAAATGGAGGAATTTGGAGTAAATAGGGAGTTTTATTAAAAATGAAGAAAAAGCCAACACCAATGTTGAATGCAAGTACATATAATGAATAGGTCCCAAGGGTGATAAATAGGGAATTCTTGAATTTTCGAAAAAATATATAATTAATTAATTAATTAGAAGATAATTACAAATCGGTATCGTACCAATTATGATTCGGGCGCATTTGGGAGTTGTTCAATGCGACATTGATGGATTCCGAATGCCCGCCGTCGTTGGTTGGATACATTTCAGCGAATAGCTCTCGCTCAAGACCATCACGTTGCCAATCGCTGGCTCCTCCGGACATCTCGTATTCGTAGGACTGAAAATTAGTGGATTTTTGGGGTTTTTGACATATTTTGGCATATTTTTAATGATTATTTTGAGCCAAAAAATGGCAAATTTTGAGTGAAAAGAGCTGAAATTTTCGCTCAAAATTGAATTTTAAAAAATTGAGTTTAGCATTTCTGACCCATTTTGGCATGATTTAATGATATTGTTCAGCCGATAAAAGGCTAATTTCAAGTGAAAAAAAGAGGAATTTCTGCTTAAAAACTGCCTTTTCCAATCAAAATTTTCAGAAATTCTCGGAATTTTCGATCAACGATTTTCACCGATTCTCAATTTTCAGAGATTTTTCCGGCTCTTCATTTCTAGCAATTTTTGGGAACTGACTGAATTTTTTGATAGT</canonical>
            <polymorphic>ATCTACTTTTTGATTTATTTTTATTATCAATTTGGCTCAAAAACCGCTTTTTAAGCCTCTTACAAACCTCGATTTCCTCACCACCGCCATTTTTCCGCCATTCTCATCGATGGCAATGTGACGAGCGGTACGGCTGAGCATACCGCATCGGATTTTCTGCTTCTCCAAACAGAGACTCATCTGGAACATTGATATTTTGTTGAAAATCTGAAACTTTAAGACTGGAAAAATGGATGAAAAGATAGAAAATAGGTCAAAAATCAACCAGGAAAATCGAAAAATCGAGAAAAAATGGAGGAATTTGGAGTAAATAGGGAGTTTTATTAAAAATGAAGAAAAAGCCAACACCAATGTTGAATGCAAGTACATATAATGAATAGGTCCCAAGGGTGATAAATAGGGAATTCTTGAATTTTCGAAAAAATATATAATTAATTAATTAATTAGAAGATAATTACAAATCGGTATCGTACCAATTATGATTCGGGCGCATTTGGGARTTGTTCAATGCGACATTGATGGATTCCGAATGCCCGCCGTCGTTGGTTGGATACATTTCAGCGAATAGCTCTCGCTCAAGACCATCACGTTGCCAATCGCTGGCTCCTCCGGACATCTCGTATTCGTAGGACTGAAAATTAGTGGATTTTTGGGGTTTTTGACATATTTTGGCATATTTTTAATGATTATTTTGAGCCAAAAAATGGCAAATTTTGAGTGAAAAGAGCTGAAATTTTCGCTCAAAATTGAATTTTAAAAAATTGAGTTTAGCATTTCTGACCCATTTTGGCATGATTTAATGATATTGTTCAGCCGATAAAAGGCTAATTTCAAGTGAAAAAAAGAGGAATTTCTGCTTAAAAACTGCCTTTTCCAATCAAAATTTTCAGAAATTCTCGGAATTTTCGATCAACGATTTTCACCGATTCTCAATTTTCAGAGATTTTTCCGGCTCTTCATTTCTAGCAATTTTTGGGAACTGACTGAATTTTTTGATAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGTGATAAATAGGGAATTCTT</pcr_primer_p1>
		<pcr_primer_p2>TTCAGTCCTACGAATACGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGGTGATAAATAGGGAATTCTTGAATTTTCGAAAAAATATATAATTAATTAATTAATTAGAAGATAATTACAAATCGGTATCGTACCAATTATGATTCGGGCGCATTTGGGAGTTGTTCAATGCGACATTGATGGATTCCGAATGCCCGCCGTCGTTGGTTGGATACATTTCAGCGAATAGCTCTCGCTCAAGACCATCACGTTGCCAATCGCTGGCTCCTCCGGACATCTCGTATTCGTAGGACTGAA</canonical_amplicon>
		<polymorphic_amplicon>GGGTGATAAATAGGGAATTCTTGAATTTTCGAAAAAATATATAATTAATTAATTAATTAGAAGATAATTACAAATCGGTATCGTACCAATTATGATTCGGGCGCATTTGGGARTTGTTCAATGCGACATTGATGGATTCCGAATGCCCGCCGTCGTTGGTTGGATACATTTCAGCGAATAGCTCTCGCTCAAGACCATCACGTTGCCAATCGCTGGCTCCTCCGGACATCTCGTATTCGTAGGACTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb735</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1107384</contig_pos>
        <strand>+</strand>
        <context>GTGAAAAAAA[A/G]AGGAATTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTAATGATATTGTTCAGCCGATAAAAGGCTAATTTCAAGTGAAAAAAA</left_flank>
        <right_flank>AGGAATTTCTGCTTAAAAACTGCCTTTTCCAATCAAAATTTTCAGAAATT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACCAATGTTGAATGCAAGTACATATAATGAATAGGTCCCAAGGGTGATAAATAGGGAATTCTTGAATTTTCGAAAAAATATATAATTAATTAATTAATTAGAAGATAATTACAAATCGGTATCGTACCAATTATGATTCGGGCGCATTTGGGAGTTGTTCAATGCGACATTGATGGATTCCGAATGCCCGCCGTCGTTGGTTGGATACATTTCAGCGAATAGCTCTCGCTCAAGACCATCACGTTGCCAATCGCTGGCTCCTCCGGACATCTCGTATTCGTAGGACTGAAAATTAGTGGATTTTTGGGGTTTTTGACATATTTTGGCATATTTTTAATGATTATTTTGAGCCAAAAAATGGCAAATTTTGAGTGAAAAGAGCTGAAATTTTCGCTCAAAATTGAATTTTAAAAAATTGAGTTTAGCATTTCTGACCCATTTTGGCATGATTTAATGATATTGTTCAGCCGATAAAAGGCTAATTTCAAGTGAAAAAAAGAGGAATTTCTGCTTAAAAACTGCCTTTTCCAATCAAAATTTTCAGAAATTCTCGGAATTTTCGATCAACGATTTTCACCGATTCTCAATTTTCAGAGATTTTTCCGGCTCTTCATTTCTAGCAATTTTTGGGAACTGACTGAATTTTTTGATAGTATTTTTCCAGCCGAAAGTTCAAAAATTTGCAAAACTTTGAAAAATTGAATTTTAGCCAATATTGAAAACTCCAGAAATTTGCGATTTTTTGAGATTTTTCGAGAATAAAAAACTTGATTTTTTGCAAAATTCTTAGACCTTTTTAGGTTTTTCAGCTATTTTTGAAAATTCTTTTTCGATTTTTCCGAATTTTTTGCCTGAAATTTGATGGGATGCTCGCGAAGATTACTGTAGATTACTGTAGTTTTTTCTGCAAACACAATCACGTCAAAATGCAGATCTGTCTGCTGATCGTGTTGGCAGAAAACTACAGTAATCAACAGTAATCTTCTGTCAATTTTCAGA</canonical>
            <polymorphic>CACCAATGTTGAATGCAAGTACATATAATGAATAGGTCCCAAGGGTGATAAATAGGGAATTCTTGAATTTTCGAAAAAATATATAATTAATTAATTAATTAGAAGATAATTACAAATCGGTATCGTACCAATTATGATTCGGGCGCATTTGGGAGTTGTTCAATGCGACATTGATGGATTCCGAATGCCCGCCGTCGTTGGTTGGATACATTTCAGCGAATAGCTCTCGCTCAAGACCATCACGTTGCCAATCGCTGGCTCCTCCGGACATCTCGTATTCGTAGGACTGAAAATTAGTGGATTTTTGGGGTTTTTGACATATTTTGGCATATTTTTAATGATTATTTTGAGCCAAAAAATGGCAAATTTTGAGTGAAAAGAGCTGAAATTTTCGCTCAAAATTGAATTTTAAAAAATTGAGTTTAGCATTTCTGACCCATTTTGGCATGATTTAATGATATTGTTCAGCCGATAAAAGGCTAATTTCAAGTGAAAAAAARAGGAATTTCTGCTTAAAAACTGCCTTTTCCAATCAAAATTTTCAGAAATTCTCGGAATTTTCGATCAACGATTTTCACCGATTCTCAATTTTCAGAGATTTTTCCGGCTCTTCATTTCTAGCAATTTTTGGGAACTGACTGAATTTTTTGATAGTATTTTTCCAGCCGAAAGTTCAAAAATTTGCAAAACTTTGAAAAATTGAATTTTAGCCAATATTGAAAACTCCAGAAATTTGCGATTTTTTGAGATTTTTCGAGAATAAAAAACTTGATTTTTTGCAAAATTCTTAGACCTTTTTAGGTTTTTCAGCTATTTTTGAAAATTCTTTTTCGATTTTTCCGAATTTTTTGCCTGAAATTTGATGGGATGCTCGCGAAGATTACTGTAGATTACTGTAGTTTTTTCTGCAAACACAATCACGTCAAAATGCAGATCTGTCTGCTGATCGTGTTGGCAGAAAACTACAGTAATCAACAGTAATCTTCTGTCAATTTTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGAGTTTAGCATTTCTGACC</pcr_primer_p1>
		<pcr_primer_p2>GGCTGGAAAAATACTATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTGAGTTTAGCATTTCTGACCCATTTTGGCATGATTTAATGATATTGTTCAGCCGATAAAAGGCTAATTTCAAGTGAAAAAAAGAGGAATTTCTGCTTAAAAACTGCCTTTTCCAATCAAAATTTTCAGAAATTCTCGGAATTTTCGATCAACGATTTTCACCGATTCTCAATTTTCAGAGATTTTTCCGGCTCTTCATTTCTAGCAATTTTTGGGAACTGACTGAATTTTTTGATAGTATTTTTCCAGCC</canonical_amplicon>
		<polymorphic_amplicon>ATTGAGTTTAGCATTTCTGACCCATTTTGGCATGATTTAATGATATTGTTCAGCCGATAAAAGGCTAATTTCAAGTGAAAAAAARAGGAATTTCTGCTTAAAAACTGCCTTTTCCAATCAAAATTTTCAGAAATTCTCGGAATTTTCGATCAACGATTTTCACCGATTCTCAATTTTCAGAGATTTTTCCGGCTCTTCATTTCTAGCAATTTTTGGGAACTGACTGAATTTTTTGATAGTATTTTTCCAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb736</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1107435</contig_pos>
        <strand>+</strand>
        <context>TTCAGAAATT[C/T]TCGGAATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGAATTTCTGCTTAAAAACTGCCTTTTCCAATCAAAATTTTCAGAAATT</left_flank>
        <right_flank>TCGGAATTTTCGATCAACGATTTTCACCGATTCTCAATTTTCAGAGATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGGGAATTCTTGAATTTTCGAAAAAATATATAATTAATTAATTAATTAGAAGATAATTACAAATCGGTATCGTACCAATTATGATTCGGGCGCATTTGGGAGTTGTTCAATGCGACATTGATGGATTCCGAATGCCCGCCGTCGTTGGTTGGATACATTTCAGCGAATAGCTCTCGCTCAAGACCATCACGTTGCCAATCGCTGGCTCCTCCGGACATCTCGTATTCGTAGGACTGAAAATTAGTGGATTTTTGGGGTTTTTGACATATTTTGGCATATTTTTAATGATTATTTTGAGCCAAAAAATGGCAAATTTTGAGTGAAAAGAGCTGAAATTTTCGCTCAAAATTGAATTTTAAAAAATTGAGTTTAGCATTTCTGACCCATTTTGGCATGATTTAATGATATTGTTCAGCCGATAAAAGGCTAATTTCAAGTGAAAAAAAGAGGAATTTCTGCTTAAAAACTGCCTTTTCCAATCAAAATTTTCAGAAATTCTCGGAATTTTCGATCAACGATTTTCACCGATTCTCAATTTTCAGAGATTTTTCCGGCTCTTCATTTCTAGCAATTTTTGGGAACTGACTGAATTTTTTGATAGTATTTTTCCAGCCGAAAGTTCAAAAATTTGCAAAACTTTGAAAAATTGAATTTTAGCCAATATTGAAAACTCCAGAAATTTGCGATTTTTTGAGATTTTTCGAGAATAAAAAACTTGATTTTTTGCAAAATTCTTAGACCTTTTTAGGTTTTTCAGCTATTTTTGAAAATTCTTTTTCGATTTTTCCGAATTTTTTGCCTGAAATTTGATGGGATGCTCGCGAAGATTACTGTAGATTACTGTAGTTTTTTCTGCAAACACAATCACGTCAAAATGCAGATCTGTCTGCTGATCGTGTTGGCAGAAAACTACAGTAATCAACAGTAATCTTCTGTCAATTTTCAGACAAGAAAACTCGGAAAAATCGAAAAAGAATATTCAAAAATAGCTGAAAAAC</canonical>
            <polymorphic>ATAGGGAATTCTTGAATTTTCGAAAAAATATATAATTAATTAATTAATTAGAAGATAATTACAAATCGGTATCGTACCAATTATGATTCGGGCGCATTTGGGAGTTGTTCAATGCGACATTGATGGATTCCGAATGCCCGCCGTCGTTGGTTGGATACATTTCAGCGAATAGCTCTCGCTCAAGACCATCACGTTGCCAATCGCTGGCTCCTCCGGACATCTCGTATTCGTAGGACTGAAAATTAGTGGATTTTTGGGGTTTTTGACATATTTTGGCATATTTTTAATGATTATTTTGAGCCAAAAAATGGCAAATTTTGAGTGAAAAGAGCTGAAATTTTCGCTCAAAATTGAATTTTAAAAAATTGAGTTTAGCATTTCTGACCCATTTTGGCATGATTTAATGATATTGTTCAGCCGATAAAAGGCTAATTTCAAGTGAAAAAAAGAGGAATTTCTGCTTAAAAACTGCCTTTTCCAATCAAAATTTTCAGAAATTYTCGGAATTTTCGATCAACGATTTTCACCGATTCTCAATTTTCAGAGATTTTTCCGGCTCTTCATTTCTAGCAATTTTTGGGAACTGACTGAATTTTTTGATAGTATTTTTCCAGCCGAAAGTTCAAAAATTTGCAAAACTTTGAAAAATTGAATTTTAGCCAATATTGAAAACTCCAGAAATTTGCGATTTTTTGAGATTTTTCGAGAATAAAAAACTTGATTTTTTGCAAAATTCTTAGACCTTTTTAGGTTTTTCAGCTATTTTTGAAAATTCTTTTTCGATTTTTCCGAATTTTTTGCCTGAAATTTGATGGGATGCTCGCGAAGATTACTGTAGATTACTGTAGTTTTTTCTGCAAACACAATCACGTCAAAATGCAGATCTGTCTGCTGATCGTGTTGGCAGAAAACTACAGTAATCAACAGTAATCTTCTGTCAATTTTCAGACAAGAAAACTCGGAAAAATCGAAAAAGAATATTCAAAAATAGCTGAAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>299 195 99 86 52 39 37 33 28 24 22 21 18 14 10 9 8 6</canonical_bands>
                <polymorphic_bands>299 195 99 86 52 39 37 33 28 24 22 21 19 18 14 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGAGTTTAGCATTTCTGACC</pcr_primer_p1>
		<pcr_primer_p2>GGCTGGAAAAATACTATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTGAGTTTAGCATTTCTGACCCATTTTGGCATGATTTAATGATATTGTTCAGCCGATAAAAGGCTAATTTCAAGTGAAAAAAAGAGGAATTTCTGCTTAAAAACTGCCTTTTCCAATCAAAATTTTCAGAAATTCTCGGAATTTTCGATCAACGATTTTCACCGATTCTCAATTTTCAGAGATTTTTCCGGCTCTTCATTTCTAGCAATTTTTGGGAACTGACTGAATTTTTTGATAGTATTTTTCCAGCC</canonical_amplicon>
		<polymorphic_amplicon>ATTGAGTTTAGCATTTCTGACCCATTTTGGCATGATTTAATGATATTGTTCAGCCGATAAAAGGCTAATTTCAAGTGAAAAAAAGAGGAATTTCTGCTTAAAAACTGCCTTTTCCAATCAAAATTTTCAGAAATTYTCGGAATTTTCGATCAACGATTTTCACCGATTCTCAATTTTCAGAGATTTTTCCGGCTCTTCATTTCTAGCAATTTTTGGGAACTGACTGAATTTTTTGATAGTATTTTTCCAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb737</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1111169</contig_pos>
        <strand>+</strand>
        <context>TGGAGATTTG[A/T]CGATAGAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGACTTCATGGTCTGAAAGACGGCTTTTTTGAGTGAATTTTGGAGATTTG</left_flank>
        <right_flank>CGATAGAAGAATGTATTTCTCATTAGATTTTTGGGTGATTTACTTCTAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATATGGGAGAGAGCTCCGATGGCGTTGCGACGGACGTTCACATTGGATGAGCTGGAATTTGTATTTTTTGACATCGAATTCTCAAAGAACCCTACTTCGACGCCGCCATCAAGGCCTCCACAAAAGCACGATGATCGAATCCAGGGGTGTTGAAGAAGTTGGGATCCTCTCTGGAGAGCATATAGGCTCTGTGGACCGCACGAGCCACCACCGATTCGTCATGATCGTTCATGAGCTTCACAAGATCCGGAAGAGAGAATTCGGACATGTCGTTGGATCCCTCGTAGGTCAGAAGATCCATAACGGATTGTTTGAGTTGTTGAGTTGGCATATGCATCAGTTCCACGATGGAAGAGGAGGAGTTTAGGGAGGTTGTGGCCTCTGCGGCGGAGGTTGGAGGTGTCCAATCGGGGAACATCGCCGCGCGAATCCGAGAAGTGCGGGTTTCGACTTCATGGTCTGAAAGACGGCTTTTTTGAGTGAATTTTGGAGATTTGTCGATAGAAGAATGTATTTCTCATTAGATTTTTGGGTGATTTACTTCTAGAAAGTTCTGGAATCTTCTCCGAATTTCCGCAAAAACAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGGGGCTTCATTTGATTTTTTGCAGAATTTTTAGACCTTTTTAGGGTTTTCAGGCATTTTTGAAGATTCTTTTTCGATTTTTCGTCTGAAAAGTCATGGATCGGTGTTCATGAGGATTACTGTAGATTACTATAGAAAACGAATTTTACTTCTGTAGTTTTCTTTTGCAAACAAAATTACGTCAAAATGCAAATTAAAAAAACTAAAAGAAACAAGTTTTCTACAGTAACCTACAGTAATCCGGAACACCGCACTATCAATTTTCAGACAAAAAAATCGGAAAAATCGAAAAACGAATCTTCAAAAATAGCTGAAAAACCAAAAAAGGTCTAAAAATTTTGCAAAAAAATCGTAGAAAATTCCCTTCAAAAATGGAATTTT</canonical>
            <polymorphic>ACATATGGGAGAGAGCTCCGATGGCGTTGCGACGGACGTTCACATTGGATGAGCTGGAATTTGTATTTTTTGACATCGAATTCTCAAAGAACCCTACTTCGACGCCGCCATCAAGGCCTCCACAAAAGCACGATGATCGAATCCAGGGGTGTTGAAGAAGTTGGGATCCTCTCTGGAGAGCATATAGGCTCTGTGGACCGCACGAGCCACCACCGATTCGTCATGATCGTTCATGAGCTTCACAAGATCCGGAAGAGAGAATTCGGACATGTCGTTGGATCCCTCGTAGGTCAGAAGATCCATAACGGATTGTTTGAGTTGTTGAGTTGGCATATGCATCAGTTCCACGATGGAAGAGGAGGAGTTTAGGGAGGTTGTGGCCTCTGCGGCGGAGGTTGGAGGTGTCCAATCGGGGAACATCGCCGCGCGAATCCGAGAAGTGCGGGTTTCGACTTCATGGTCTGAAAGACGGCTTTTTTGAGTGAATTTTGGAGATTTGWCGATAGAAGAATGTATTTCTCATTAGATTTTTGGGTGATTTACTTCTAGAAAGTTCTGGAATCTTCTCCGAATTTCCGCAAAAACAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGGGGCTTCATTTGATTTTTTGCAGAATTTTTAGACCTTTTTAGGGTTTTCAGGCATTTTTGAAGATTCTTTTTCGATTTTTCGTCTGAAAAGTCATGGATCGGTGTTCATGAGGATTACTGTAGATTACTATAGAAAACGAATTTTACTTCTGTAGTTTTCTTTTGCAAACAAAATTACGTCAAAATGCAAATTAAAAAAACTAAAAGAAACAAGTTTTCTACAGTAACCTACAGTAATCCGGAACACCGCACTATCAATTTTCAGACAAAAAAATCGGAAAAATCGAAAAACGAATCTTCAAAAATAGCTGAAAAACCAAAAAAGGTCTAAAAATTTTGCAAAAAAATCGTAGAAAATTCCCTTCAAAAATGGAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>312 212 193 94 77 51 38 23</canonical_bands>
                <polymorphic_bands>312 244 212 94 77 38 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGAGTTTAGGGAGGTTGTG</pcr_primer_p1>
		<pcr_primer_p2>ACTCGAATACGCAATTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>677</pcr_amplicon_size>
		<canonical_amplicon>AGGAGTTTAGGGAGGTTGTGGCCTCTGCGGCGGAGGTTGGAGGTGTCCAATCGGGGAACATCGCCGCGCGAATCCGAGAAGTGCGGGTTTCGACTTCATGGTCTGAAAGACGGCTTTTTTGAGTGAATTTTGGAGATTTGTCGATAGAAGAATGTATTTC</canonical_amplicon>
		<polymorphic_amplicon>AGGAGTTTAGGGAGGTTGTGGCCTCTGCGGCGGAGGTTGGAGGTGTCCAATCGGGGAACATCGCCGCGCGAATCCGAGAAGTGCGGGTTTCGACTTCATGGTCTGAAAGACGGCTTTTTTGAGTGAATTTTGGAGATTTGWCGATAGAAGAATGTATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb738</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1111152</contig_pos>
        <strand>+</strand>
        <context>CTTTTTTGAG[C/T]GAATTTTGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGAGAAGTGCGGGTTTCGACTTCATGGTCTGAAAGACGGCTTTTTTGAG</left_flank>
        <right_flank>GAATTTTGGAGATTTGTCGATAGAAGAATGTATTTCTCATTAGATTTTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTCCACGTTGCTCAGACATATGGGAGAGAGCTCCGATGGCGTTGCGACGGACGTTCACATTGGATGAGCTGGAATTTGTATTTTTTGACATCGAATTCTCAAAGAACCCTACTTCGACGCCGCCATCAAGGCCTCCACAAAAGCACGATGATCGAATCCAGGGGTGTTGAAGAAGTTGGGATCCTCTCTGGAGAGCATATAGGCTCTGTGGACCGCACGAGCCACCACCGATTCGTCATGATCGTTCATGAGCTTCACAAGATCCGGAAGAGAGAATTCGGACATGTCGTTGGATCCCTCGTAGGTCAGAAGATCCATAACGGATTGTTTGAGTTGTTGAGTTGGCATATGCATCAGTTCCACGATGGAAGAGGAGGAGTTTAGGGAGGTTGTGGCCTCTGCGGCGGAGGTTGGAGGTGTCCAATCGGGGAACATCGCCGCGCGAATCCGAGAAGTGCGGGTTTCGACTTCATGGTCTGAAAGACGGCTTTTTTGAGTGAATTTTGGAGATTTGTCGATAGAAGAATGTATTTCTCATTAGATTTTTGGGTGATTTACTTCTAGAAAGTTCTGGAATCTTCTCCGAATTTCCGCAAAAACAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGGGGCTTCATTTGATTTTTTGCAGAATTTTTAGACCTTTTTAGGGTTTTCAGGCATTTTTGAAGATTCTTTTTCGATTTTTCGTCTGAAAAGTCATGGATCGGTGTTCATGAGGATTACTGTAGATTACTATAGAAAACGAATTTTACTTCTGTAGTTTTCTTTTGCAAACAAAATTACGTCAAAATGCAAATTAAAAAAACTAAAAGAAACAAGTTTTCTACAGTAACCTACAGTAATCCGGAACACCGCACTATCAATTTTCAGACAAAAAAATCGGAAAAATCGAAAAACGAATCTTCAAAAATAGCTGAAAAACCAAAAAAGGTCTAAAAATTTTGCAAAAAAATCGTAGAAAATTCCC</canonical>
            <polymorphic>ACCTCCACGTTGCTCAGACATATGGGAGAGAGCTCCGATGGCGTTGCGACGGACGTTCACATTGGATGAGCTGGAATTTGTATTTTTTGACATCGAATTCTCAAAGAACCCTACTTCGACGCCGCCATCAAGGCCTCCACAAAAGCACGATGATCGAATCCAGGGGTGTTGAAGAAGTTGGGATCCTCTCTGGAGAGCATATAGGCTCTGTGGACCGCACGAGCCACCACCGATTCGTCATGATCGTTCATGAGCTTCACAAGATCCGGAAGAGAGAATTCGGACATGTCGTTGGATCCCTCGTAGGTCAGAAGATCCATAACGGATTGTTTGAGTTGTTGAGTTGGCATATGCATCAGTTCCACGATGGAAGAGGAGGAGTTTAGGGAGGTTGTGGCCTCTGCGGCGGAGGTTGGAGGTGTCCAATCGGGGAACATCGCCGCGCGAATCCGAGAAGTGCGGGTTTCGACTTCATGGTCTGAAAGACGGCTTTTTTGAGYGAATTTTGGAGATTTGTCGATAGAAGAATGTATTTCTCATTAGATTTTTGGGTGATTTACTTCTAGAAAGTTCTGGAATCTTCTCCGAATTTCCGCAAAAACAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGGGGCTTCATTTGATTTTTTGCAGAATTTTTAGACCTTTTTAGGGTTTTCAGGCATTTTTGAAGATTCTTTTTCGATTTTTCGTCTGAAAAGTCATGGATCGGTGTTCATGAGGATTACTGTAGATTACTATAGAAAACGAATTTTACTTCTGTAGTTTTCTTTTGCAAACAAAATTACGTCAAAATGCAAATTAAAAAAACTAAAAGAAACAAGTTTTCTACAGTAACCTACAGTAATCCGGAACACCGCACTATCAATTTTCAGACAAAAAAATCGGAAAAATCGAAAAACGAATCTTCAAAAATAGCTGAAAAACCAAAAAAGGTCTAAAAATTTTGCAAAAAAATCGTAGAAAATTCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>188 142 111 105 80 53 52 44 42 38 32 30 25 21 8 7 7 7 5 3</canonical_bands>
                <polymorphic_bands>188 142 111 105 95 80 52 44 38 32 30 25 21 8 7 7 7 5 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGATCCATAACGGATTGTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATCACCCAAAAATCTAATGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAGATCCATAACGGATTGTTTGAGTTGTTGAGTTGGCATATGCATCAGTTCCACGATGGAAGAGGAGGAGTTTAGGGAGGTTGTGGCCTCTGCGGCGGAGGTTGGAGGTGTCCAATCGGGGAACATCGCCGCGCGAATCCGAGAAGTGCGGGTTTCGACTTCATGGTCTGAAAGACGGCTTTTTTGAGTGAATTTTGGAGATTTGTCGATAGAAGAATGTATTTCTCATTAGATTTTTGGGTGATTT</canonical_amplicon>
		<polymorphic_amplicon>AAGATCCATAACGGATTGTTTGAGTTGTTGAGTTGGCATATGCATCAGTTCCACGATGGAAGAGGAGGAGTTTAGGGAGGTTGTGGCCTCTGCGGCGGAGGTTGGAGGTGTCCAATCGGGGAACATCGCCGCGCGAATCCGAGAAGTGCGGGTTTCGACTTCATGGTCTGAAAGACGGCTTTTTTGAGYGAATTTTGGAGATTTGTCGATAGAAGAATGTATTTCTCATTAGATTTTTGGGTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb739</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1111129</contig_pos>
        <strand>+</strand>
        <context>CGACTTCATG[G/T]TCTGAAAGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGGGGAACATCGCCGCGCGAATCCGAGAAGTGCGGGTTTCGACTTCATG</left_flank>
        <right_flank>TCTGAAAGACGGCTTTTTTGAGTGAATTTTGGAGATTTGTCGATAGAAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCACTTCGGAAGATCAAGAGGGGACCTCCACGTTGCTCAGACATATGGGAGAGAGCTCCGATGGCGTTGCGACGGACGTTCACATTGGATGAGCTGGAATTTGTATTTTTTGACATCGAATTCTCAAAGAACCCTACTTCGACGCCGCCATCAAGGCCTCCACAAAAGCACGATGATCGAATCCAGGGGTGTTGAAGAAGTTGGGATCCTCTCTGGAGAGCATATAGGCTCTGTGGACCGCACGAGCCACCACCGATTCGTCATGATCGTTCATGAGCTTCACAAGATCCGGAAGAGAGAATTCGGACATGTCGTTGGATCCCTCGTAGGTCAGAAGATCCATAACGGATTGTTTGAGTTGTTGAGTTGGCATATGCATCAGTTCCACGATGGAAGAGGAGGAGTTTAGGGAGGTTGTGGCCTCTGCGGCGGAGGTTGGAGGTGTCCAATCGGGGAACATCGCCGCGCGAATCCGAGAAGTGCGGGTTTCGACTTCATGGTCTGAAAGACGGCTTTTTTGAGTGAATTTTGGAGATTTGTCGATAGAAGAATGTATTTCTCATTAGATTTTTGGGTGATTTACTTCTAGAAAGTTCTGGAATCTTCTCCGAATTTCCGCAAAAACAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGGGGCTTCATTTGATTTTTTGCAGAATTTTTAGACCTTTTTAGGGTTTTCAGGCATTTTTGAAGATTCTTTTTCGATTTTTCGTCTGAAAAGTCATGGATCGGTGTTCATGAGGATTACTGTAGATTACTATAGAAAACGAATTTTACTTCTGTAGTTTTCTTTTGCAAACAAAATTACGTCAAAATGCAAATTAAAAAAACTAAAAGAAACAAGTTTTCTACAGTAACCTACAGTAATCCGGAACACCGCACTATCAATTTTCAGACAAAAAAATCGGAAAAATCGAAAAACGAATCTTCAAAAATAGCTGAAAAACCAAAAAAGGTCTAAAAATTTTG</canonical>
            <polymorphic>CCACTTCGGAAGATCAAGAGGGGACCTCCACGTTGCTCAGACATATGGGAGAGAGCTCCGATGGCGTTGCGACGGACGTTCACATTGGATGAGCTGGAATTTGTATTTTTTGACATCGAATTCTCAAAGAACCCTACTTCGACGCCGCCATCAAGGCCTCCACAAAAGCACGATGATCGAATCCAGGGGTGTTGAAGAAGTTGGGATCCTCTCTGGAGAGCATATAGGCTCTGTGGACCGCACGAGCCACCACCGATTCGTCATGATCGTTCATGAGCTTCACAAGATCCGGAAGAGAGAATTCGGACATGTCGTTGGATCCCTCGTAGGTCAGAAGATCCATAACGGATTGTTTGAGTTGTTGAGTTGGCATATGCATCAGTTCCACGATGGAAGAGGAGGAGTTTAGGGAGGTTGTGGCCTCTGCGGCGGAGGTTGGAGGTGTCCAATCGGGGAACATCGCCGCGCGAATCCGAGAAGTGCGGGTTTCGACTTCATGKTCTGAAAGACGGCTTTTTTGAGTGAATTTTGGAGATTTGTCGATAGAAGAATGTATTTCTCATTAGATTTTTGGGTGATTTACTTCTAGAAAGTTCTGGAATCTTCTCCGAATTTCCGCAAAAACAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGGGGCTTCATTTGATTTTTTGCAGAATTTTTAGACCTTTTTAGGGTTTTCAGGCATTTTTGAAGATTCTTTTTCGATTTTTCGTCTGAAAAGTCATGGATCGGTGTTCATGAGGATTACTGTAGATTACTATAGAAAACGAATTTTACTTCTGTAGTTTTCTTTTGCAAACAAAATTACGTCAAAATGCAAATTAAAAAAACTAAAAGAAACAAGTTTTCTACAGTAACCTACAGTAATCCGGAACACCGCACTATCAATTTTCAGACAAAAAAATCGGAAAAATCGAAAAACGAATCTTCAAAAATAGCTGAAAAACCAAAAAAGGTCTAAAAATTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNNNNGTC</site>
                <isoschizomers>
                    <enzyme>AasI</enzyme>
                    <enzyme>DrdI</enzyme>
                    <enzyme>DseDI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGGTCAGAAGATCCATAACG</pcr_primer_p1>
		<pcr_primer_p2>ACCCAAAAATCTAATGAGAAATAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTAGGTCAGAAGATCCATAACGGATTGTTTGAGTTGTTGAGTTGGCATATGCATCAGTTCCACGATGGAAGAGGAGGAGTTTAGGGAGGTTGTGGCCTCTGCGGCGGAGGTTGGAGGTGTCCAATCGGGGAACATCGCCGCGCGAATCCGAGAAGTGCGGGTTTCGACTTCATGGTCTGAAAGACGGCTTTTTTGAGTGAATTTTGGAGATTTGTCGATAGAAGAATGTATTTCTCATTAGATTTTTGGGT</canonical_amplicon>
		<polymorphic_amplicon>GTAGGTCAGAAGATCCATAACGGATTGTTTGAGTTGTTGAGTTGGCATATGCATCAGTTCCACGATGGAAGAGGAGGAGTTTAGGGAGGTTGTGGCCTCTGCGGCGGAGGTTGGAGGTGTCCAATCGGGGAACATCGCCGCGCGAATCCGAGAAGTGCGGGTTTCGACTTCATGKTCTGAAAGACGGCTTTTTTGAGTGAATTTTGGAGATTTGTCGATAGAAGAATGTATTTCTCATTAGATTTTTGGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb740</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1120188</contig_pos>
        <strand>+</strand>
        <context>CATGAGCAAT[C/T]CCTAGTAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTGTAGGATACAAGTTCTCCATTTCTCCAGGTTTTCCTTCATGAGCAAT</left_flank>
        <right_flank>CCTAGTAACTCTCCATCTTTGGTGAAAAACACGATATTCAGATTTGTATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGCTACATTTATTTTATCAGTTGACAATTTTTTGATATCTTATACGGGAATCGAGATATAAAGGCTCAAGGTTGATGCTTGGGTGCCACTCTATTAGAGAACTAAAATGACCAAATTAATCGAAAAAATACCTTTTCTCTTTCTCAAAAACTCATAATCCACTGGTTTCTTCAAATTCGCGTGTTTCTCAAACACTTTCAACGTCTCCAATGCTCCACAAGACCCTAGGAACGAAGCGACAACTCGTTCCATATGTTTTCCAAAGTTTGAGGGCACTTTGATGTTTTCAATCATCCGGACTTTTCGATTATTCAGAATCTGAACACTTCTAGAATGACTATATGACCTTTTTCTTTGTTTCAAACCTGTCTATAGTCGTCCAAATCGAATTTAAATGGATATTGACCGAAATTGGCGTACAGCTTCTCCCCGGGAGTCCTTAATCCTACTGTAGGATACAAGTTCTCCATTTCTCCAGGTTTTCCTTCATGAGCAATTCCTAGTAACTCTCCATCTTTGGTGAAAAACACGATATTCAGATTTGTATCAATCCCACATCCAATGACATCATGTTTCCCGAATCTTGGTCCATAAGACTTCCCATGACCACAAGCATTAAAAAAGTTCCCATCATCCCCATGGTATCCATAACAATGGGGATCCCATCCGGGCATTCTAGTCAGGTCCCCATTCGCTTTACTCAGCCCAACACCCATACATCCGTTCTTTCCCTCGCAATGGAGAATGGTGACCTCGAAATAGTAGGTTCCGAAGCAGGCGGGAATGCAGCAATCGCTACGGATCACTCCTGAGATGTCCTTGTCGCCTTGGAGGGGCACAGCTGGAATCGAAAAAGAAATAAAAAGGATTGGGAGGGAGTGGGGGTTGAACTTGCGGTGGCTCGCGCGGGAGCCTACAGCCCTAGCACTACACCACGCGGCGTAATTTCAATGAGGCGGCGCCATGGCATAATGAAATAGCCGGGAAATGAGAGAGAG</canonical>
            <polymorphic>TCAGCTACATTTATTTTATCAGTTGACAATTTTTTGATATCTTATACGGGAATCGAGATATAAAGGCTCAAGGTTGATGCTTGGGTGCCACTCTATTAGAGAACTAAAATGACCAAATTAATCGAAAAAATACCTTTTCTCTTTCTCAAAAACTCATAATCCACTGGTTTCTTCAAATTCGCGTGTTTCTCAAACACTTTCAACGTCTCCAATGCTCCACAAGACCCTAGGAACGAAGCGACAACTCGTTCCATATGTTTTCCAAAGTTTGAGGGCACTTTGATGTTTTCAATCATCCGGACTTTTCGATTATTCAGAATCTGAACACTTCTAGAATGACTATATGACCTTTTTCTTTGTTTCAAACCTGTCTATAGTCGTCCAAATCGAATTTAAATGGATATTGACCGAAATTGGCGTACAGCTTCTCCCCGGGAGTCCTTAATCCTACTGTAGGATACAAGTTCTCCATTTCTCCAGGTTTTCCTTCATGAGCAATYCCTAGTAACTCTCCATCTTTGGTGAAAAACACGATATTCAGATTTGTATCAATCCCACATCCAATGACATCATGTTTCCCGAATCTTGGTCCATAAGACTTCCCATGACCACAAGCATTAAAAAAGTTCCCATCATCCCCATGGTATCCATAACAATGGGGATCCCATCCGGGCATTCTAGTCAGGTCCCCATTCGCTTTACTCAGCCCAACACCCATACATCCGTTCTTTCCCTCGCAATGGAGAATGGTGACCTCGAAATAGTAGGTTCCGAAGCAGGCGGGAATGCAGCAATCGCTACGGATCACTCCTGAGATGTCCTTGTCGCCTTGGAGGGGCACAGCTGGAATCGAAAAAGAAATAAAAAGGATTGGGAGGGAGTGGGGGTTGAACTTGCGGTGGCTCGCGCGGGAGCCTACAGCCCTAGCACTACACCACGCGGCGTAATTTCAATGAGGCGGCGCCATGGCATAATGAAATAGCCGGGAAATGAGAGAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>449 214 88 85 60 55 27 22</canonical_bands>
                <polymorphic_bands>534 214 88 60 55 27 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTTTGTTTCAAACCTGTCTAT</pcr_primer_p1>
		<pcr_primer_p2>GGAAGTCTTATGGACCAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCTTTGTTTCAAACCTGTCTATAGTCGTCCAAATCGAATTTAAATGGATATTGACCGAAATTGGCGTACAGCTTCTCCCCGGGAGTCCTTAATCCTACTGTAGGATACAAGTTCTCCATTTCTCCAGGTTTTCCTTCATGAGCAATTCCTAGTAACTCTCCATCTTTGGTGAAAAACACGATATTCAGATTTGTATCAATCCCACATCCAATGACATCATGTTTCCCGAATCTTGGTCCATAAGACTTCC</canonical_amplicon>
		<polymorphic_amplicon>TTCTTTGTTTCAAACCTGTCTATAGTCGTCCAAATCGAATTTAAATGGATATTGACCGAAATTGGCGTACAGCTTCTCCCCGGGAGTCCTTAATCCTACTGTAGGATACAAGTTCTCCATTTCTCCAGGTTTTCCTTCATGAGCAATYCCTAGTAACTCTCCATCTTTGGTGAAAAACACGATATTCAGATTTGTATCAATCCCACATCCAATGACATCATGTTTCCCGAATCTTGGTCCATAAGACTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb741</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1126018</contig_pos>
        <strand>+</strand>
        <context>AATGACTAAT[C/T]TTCCAGCAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACTAATTTTCCAACAGATTTTCCGATTTTTCACTCAAAAAATGACTAAT</left_flank>
        <right_flank>TTCCAGCAGTTTATTCGATTTTGAGCTCGAAAAATCACTATTTTTCACCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATGAGGTGTCATGCTGCGAAAGCATACAGCCCGGAGAACACTGTTGTGGTGCCAAAGGTATTTTTGGCTCGAAAAATCGGCAAATTCTTCGATCTTCGGCTCAAAAGTTCACTAATTTTCCATCGATTTTTCCGTTTTTAGCTCGAGAAATCACTATTTTCCACCGGATTTTCCAATTTTTAGCTCAAAAAAGCACTGATTTTTCATTGCTTCTTTCGATTTTTGGCTCGAAAATGCACTAATTTTTCACCAAAATTACCTATTTTCGGCTCAAAACAGTAATTTTCATTGCTTTTTTCGATTTTTGGCTCGAAAAATCCCTTTTTCTCACCGATTTTTTGGATTTTTGACTTTAAGAATCACTAATTTTTTTTATCATTTTCTTCTATTTTTGACTCAAACAACCACTATTTTTAGCGGTTTTTTTCTATTTTTGGCTCTAAAAATCACTAATTTTCCAACAGATTTTCCGATTTTTCACTCAAAAAATGACTAATCTTCCAGCAGTTTATTCGATTTTGAGCTCGAAAAATCACTATTTTTCACCAAATTTTCCGATTTTTGGCCCCAAAAAATCGCCAAATTCCTATTTTTCCAGATCATCTACCTGGCTGTGGAGATGGCGAGAAACGTGGAAGGTGTCAATGAGAAGAACAAGGCCTCCTATACGGCAAGCCAGGAGGAAGAATCCAAGAAACAAATGGAATAATTTGTTTTTTTTTTCTTTGAATTTCCTTTTATTTCTGAATTCGTTACCTCTTTTGCTATTCCATCTCACTGTGTTTTCCCTTTGTTTCCCCTATTTTTCAGTCATTTCCTCCTAGTTCTCCTCCCGGCTTTTTTTTTATATAAATCGTTCTTTTTCCGTTAAAAATCATTGATTTTATTTACTTTTCTTGAATTTGAGTATTTTTTTCTCATTTTGATTACTTTTATTTGATTTTTTGGCGCTATGTTGGTGGGGGGGGGGCCACTATTTTTTGACTTTTTTGGCATTT</canonical>
            <polymorphic>TTATGAGGTGTCATGCTGCGAAAGCATACAGCCCGGAGAACACTGTTGTGGTGCCAAAGGTATTTTTGGCTCGAAAAATCGGCAAATTCTTCGATCTTCGGCTCAAAAGTTCACTAATTTTCCATCGATTTTTCCGTTTTTAGCTCGAGAAATCACTATTTTCCACCGGATTTTCCAATTTTTAGCTCAAAAAAGCACTGATTTTTCATTGCTTCTTTCGATTTTTGGCTCGAAAATGCACTAATTTTTCACCAAAATTACCTATTTTCGGCTCAAAACAGTAATTTTCATTGCTTTTTTCGATTTTTGGCTCGAAAAATCCCTTTTTCTCACCGATTTTTTGGATTTTTGACTTTAAGAATCACTAATTTTTTTTATCATTTTCTTCTATTTTTGACTCAAACAACCACTATTTTTAGCGGTTTTTTTCTATTTTTGGCTCTAAAAATCACTAATTTTCCAACAGATTTTCCGATTTTTCACTCAAAAAATGACTAATYTTCCAGCAGTTTATTCGATTTTGAGCTCGAAAAATCACTATTTTTCACCAAATTTTCCGATTTTTGGCCCCAAAAAATCGCCAAATTCCTATTTTTCCAGATCATCTACCTGGCTGTGGAGATGGCGAGAAACGTGGAAGGTGTCAATGAGAAGAACAAGGCCTCCTATACGGCAAGCCAGGAGGAAGAATCCAAGAAACAAATGGAATAATTTGTTTTTTTTTTCTTTGAATTTCCTTTTATTTCTGAATTCGTTACCTCTTTTGCTATTCCATCTCACTGTGTTTTCCCTTTGTTTCCCCTATTTTTCAGTCATTTCCTCCTAGTTCTCCTCCCGGCTTTTTTTTTATATAAATCGTTCTTTTTCCGTTAAAAATCATTGATTTTATTTACTTTTCTTGAATTTGAGTATTTTTTTCTCATTTTGATTACTTTTATTTGATTTTTTGGCGCTATGTTGGTGGGGGGGGGGCCACTATTTTTTGACTTTTTTGGCATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGGCTCTAAAAATCACTAA</pcr_primer_p1>
		<pcr_primer_p2>GTATAGGAGGCCTTGTTCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGGCTCTAAAAATCACTAATTTTCCAACAGATTTTCCGATTTTTCACTCAAAAAATGACTAATCTTCCAGCAGTTTATTCGATTTTGAGCTCGAAAAATCACTATTTTTCACCAAATTTTCCGATTTTTGGCCCCAAAAAATCGCCAAATTCCTATTTTTCCAGATCATCTACCTGGCTGTGGAGATGGCGAGAAACGTGGAAGGTGTCAATGAGAAGAACAAGGCCTCCTATAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGGCTCTAAAAATCACTAATTTTCCAACAGATTTTCCGATTTTTCACTCAAAAAATGACTAATYTTCCAGCAGTTTATTCGATTTTGAGCTCGAAAAATCACTATTTTTCACCAAATTTTCCGATTTTTGGCCCCAAAAAATCGCCAAATTCCTATTTTTCCAGATCATCTACCTGGCTGTGGAGATGGCGAGAAACGTGGAAGGTGTCAATGAGAAGAACAAGGCCTCCTATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb742</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1154176</contig_pos>
        <strand></strand>
        <context>ATAAAAACAG[G/A]CTTAATTATA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGAAAGATATGGAAAAGAGTTATGGAATCTGAAATCTGGAATAAAAACAG</left_flank>
        <right_flank>CTTAATTATAGGTTTAGAATAATTCTTCATAACTTTGTTTCAACAAGAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCAAAGTCAACCTACATGTATTTTATCATGACTAGACAAGTAGACGGTATTCAAGCTGATAAAATGGTTGTAACCAGGGCGGGAAAACGCCGGCGGCCGCCGGCTTTCCGCCGTCTCACAGCGCAGCCGAAAACGGCGGCGAAACGCAGCGTTTTCAAAACACAGCCGCGCCGCGGCGCTGGCGTTCATGCTGTGTTTGCGCGAATTAGTTCAACTGTGTTTTTACAAATAAGTTCGAATATTGTAAATTCAAAAAGATCGCACCGGTGAACACACAAACAAACAAGTAAACAAGGGGGCGGAGCGATCCGCCCCTTTTCGCAAAGGCGCCGCGTAGTTTTTCGACGGTATTTTAGCGATGCCGTTTTTTGGTAATTTTTCATCGAATTTCTTCCGAATTGAAGGAAATAGTTTCTATGAATAAAATTGTACTTATTAAATTGGAAAAGAAAGATATGGAAAAGAGTTATGGAATCTGAAATCTGGAATAAAAACAGGCTTAATTATAGGTTTAGAATAATTCTTCATAACTTTGTTTCAACAAGAGAATGAGGTCGGAAATGTTGAAAAAATCGAAAAGAAAATTTTTTTTGGATTTCGAAAAAATGCCTTATAAAATGACTTAGCTTTTTTTTCGATCAAAAAAATGTTTGTCAATTTTTTGAGATTTTTTGTTAAGAAAACGTTTGACGTTCAATTTTAGTTACCGGATTCAAATATCAGATCGAGATCTCTTCTCGATACGAAGTTATGGACAAAAGCCTGAAACCGAATTTTGGCTTAAGTATAGGCTTAGAAAAATCCTTAATAACTTTGTTTAAACAAGAGATTTGGGCTTGAAATTTCGGGACATAGCTCAAAATTTTTTTTAGATAAAAAACACAAAAATTGCAGGTCGGACCCCTATCTATAGGGTTCCGGACCGCCCCGTTCGAACAGTTTATTATTTGAAGTAATTTTAAATAAAATTAATAGTTGAGGTTATAATAATCATTATG</canonical>
            <polymorphic>ACTCAAAGTCAACCTACATGTATTTTATCATGACTAGACAAGTAGACGGTATTCAAGCTGATAAAATGGTTGTAACCAGGGCGGGAAAACGCCGGCGGCCGCCGGCTTTCCGCCGTCTCACAGCGCAGCCGAAAACGGCGGCGAAACGCAGCGTTTTCAAAACACAGCCGCGCCGCGGCGCTGGCGTTCATGCTGTGTTTGCGCGAATTAGTTCAACTGTGTTTTTACAAATAAGTTCGAATATTGTAAATTCAAAAAGATCGCACCGGTGAACACACAAACAAACAAGTAAACAAGGGGGCGGAGCGATCCGCCCCTTTTCGCAAAGGCGCCGCGTAGTTTTTCGACGGTATTTTAGCGATGCCGTTTTTTGGTAATTTTTCATCGAATTTCTTCCGAATTGAAGGAAATAGTTTCTATGAATAAAATTGTACTTATTAAATTGGAAAAGAAAGATATGGAAAAGAGTTATGGAATCTGAAATCTGGAATAAAAACAGRCTTAATTATAGGTTTAGAATAATTCTTCATAACTTTGTTTCAACAAGAGAATGAGGTCGGAAATGTTGAAAAAATCGAAAAGAAAATTTTTTTTGGATTTCGAAAAAATGCCTTATAAAATGACTTAGCTTTTTTTTCGATCAAAAAAATGTTTGTCAATTTTTTGAGATTTTTTGTTAAGAAAACGTTTGACGTTCAATTTTAGTTACCGGATTCAAATATCAGATCGAGATCTCTTCTCGATACGAAGTTATGGACAAAAGCCTGAAACCGAATTTTGGCTTAAGTATAGGCTTAGAAAAATCCTTAATAACTTTGTTTAAACAAGAGATTTGGGCTTGAAATTTCGGGACATAGCTCAAAATTTTTTTTAGATAAAAAACACAAAAATTGCAGGTCGGACCCCTATCTATAGGGTTCCGGACCGCCCCGTTCGAACAGTTTATTATTTGAAGTAATTTTAAATAAAATTAATAGTTGAGGTTATAATAATCATTATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>333 143 135 128 57 44 41 39 23 20 18 12 7</canonical_bands>
                <polymorphic_bands>461 143 135 57 44 41 39 23 20 18 12 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAAAGAAAGATATGGAAAAGA</pcr_primer_p1>
		<pcr_primer_p2>GAACGTCAAACGTTTTCTTAAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GGAAAAGAAAGATATGGAAAAGAGTTATGGAATCTGAAATCTGGAATAAAAACAGGCTTAATTATAGGTTTAGAATAATTCTTCATAACTTTGTTTCAACAAGAGAATGAGGTCGGAAATGTTGAAAAAATCGAAAAGAAAATTTTTTTTGGATTTCGAAAAAATGCCTTATAAAATGACTTAGCTTTTTTTTCGATCAAAAAAATGTTTGTCAATTTTTTGAGATTTTTTGTTAAGAAAACGTTTGACGTTC</canonical_amplicon>
		<polymorphic_amplicon>GGAAAAGAAAGATATGGAAAAGAGTTATGGAATCTGAAATCTGGAATAAAAACAGRCTTAATTATAGGTTTAGAATAATTCTTCATAACTTTGTTTCAACAAGAGAATGAGGTCGGAAATGTTGAAAAAATCGAAAAGAAAATTTTTTTTGGATTTCGAAAAAATGCCTTATAAAATGACTTAGCTTTTTTTTCGATCAAAAAAATGTTTGTCAATTTTTTGAGATTTTTTGTTAAGAAAACGTTTGACGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb743</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1154189</contig_pos>
        <strand></strand>
        <context>TAATTATAGG[T/C]TTAGAATAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAGAGTTATGGAATCTGAAATCTGGAATAAAAACAGGCTTAATTATAGG</left_flank>
        <right_flank>TTAGAATAATTCTTCATAACTTTGTTTCAACAAGAGAATGAGGTCGGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACATGTATTTTATCATGACTAGACAAGTAGACGGTATTCAAGCTGATAAAATGGTTGTAACCAGGGCGGGAAAACGCCGGCGGCCGCCGGCTTTCCGCCGTCTCACAGCGCAGCCGAAAACGGCGGCGAAACGCAGCGTTTTCAAAACACAGCCGCGCCGCGGCGCTGGCGTTCATGCTGTGTTTGCGCGAATTAGTTCAACTGTGTTTTTACAAATAAGTTCGAATATTGTAAATTCAAAAAGATCGCACCGGTGAACACACAAACAAACAAGTAAACAAGGGGGCGGAGCGATCCGCCCCTTTTCGCAAAGGCGCCGCGTAGTTTTTCGACGGTATTTTAGCGATGCCGTTTTTTGGTAATTTTTCATCGAATTTCTTCCGAATTGAAGGAAATAGTTTCTATGAATAAAATTGTACTTATTAAATTGGAAAAGAAAGATATGGAAAAGAGTTATGGAATCTGAAATCTGGAATAAAAACAGGCTTAATTATAGGTTTAGAATAATTCTTCATAACTTTGTTTCAACAAGAGAATGAGGTCGGAAATGTTGAAAAAATCGAAAAGAAAATTTTTTTTGGATTTCGAAAAAATGCCTTATAAAATGACTTAGCTTTTTTTTCGATCAAAAAAATGTTTGTCAATTTTTTGAGATTTTTTGTTAAGAAAACGTTTGACGTTCAATTTTAGTTACCGGATTCAAATATCAGATCGAGATCTCTTCTCGATACGAAGTTATGGACAAAAGCCTGAAACCGAATTTTGGCTTAAGTATAGGCTTAGAAAAATCCTTAATAACTTTGTTTAAACAAGAGATTTGGGCTTGAAATTTCGGGACATAGCTCAAAATTTTTTTTAGATAAAAAACACAAAAATTGCAGGTCGGACCCCTATCTATAGGGTTCCGGACCGCCCCGTTCGAACAGTTTATTATTTGAAGTAATTTTAAATAAAATTAATAGTTGAGGTTATAATAATCATTATGATAATAGGACGAA</canonical>
            <polymorphic>CTACATGTATTTTATCATGACTAGACAAGTAGACGGTATTCAAGCTGATAAAATGGTTGTAACCAGGGCGGGAAAACGCCGGCGGCCGCCGGCTTTCCGCCGTCTCACAGCGCAGCCGAAAACGGCGGCGAAACGCAGCGTTTTCAAAACACAGCCGCGCCGCGGCGCTGGCGTTCATGCTGTGTTTGCGCGAATTAGTTCAACTGTGTTTTTACAAATAAGTTCGAATATTGTAAATTCAAAAAGATCGCACCGGTGAACACACAAACAAACAAGTAAACAAGGGGGCGGAGCGATCCGCCCCTTTTCGCAAAGGCGCCGCGTAGTTTTTCGACGGTATTTTAGCGATGCCGTTTTTTGGTAATTTTTCATCGAATTTCTTCCGAATTGAAGGAAATAGTTTCTATGAATAAAATTGTACTTATTAAATTGGAAAAGAAAGATATGGAAAAGAGTTATGGAATCTGAAATCTGGAATAAAAACAGGCTTAATTATAGGYTTAGAATAATTCTTCATAACTTTGTTTCAACAAGAGAATGAGGTCGGAAATGTTGAAAAAATCGAAAAGAAAATTTTTTTTGGATTTCGAAAAAATGCCTTATAAAATGACTTAGCTTTTTTTTCGATCAAAAAAATGTTTGTCAATTTTTTGAGATTTTTTGTTAAGAAAACGTTTGACGTTCAATTTTAGTTACCGGATTCAAATATCAGATCGAGATCTCTTCTCGATACGAAGTTATGGACAAAAGCCTGAAACCGAATTTTGGCTTAAGTATAGGCTTAGAAAAATCCTTAATAACTTTGTTTAAACAAGAGATTTGGGCTTGAAATTTCGGGACATAGCTCAAAATTTTTTTTAGATAAAAAACACAAAAATTGCAGGTCGGACCCCTATCTATAGGGTTCCGGACCGCCCCGTTCGAACAGTTTATTATTTGAAGTAATTTTAAATAAAATTAATAGTTGAGGTTATAATAATCATTATGATAATAGGACGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAGAGTTATGGAATCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>GGTAACTAAAATTGAACGTCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAAGAGTTATGGAATCTGAAATCTGGAATAAAAACAGGCTTAATTATAGGTTTAGAATAATTCTTCATAACTTTGTTTCAACAAGAGAATGAGGTCGGAAATGTTGAAAAAATCGAAAAGAAAATTTTTTTTGGATTTCGAAAAAATGCCTTATAAAATGACTTAGCTTTTTTTTCGATCAAAAAAATGTTTGTCAATTTTTTGAGATTTTTTGTTAAGAAAACGTTTGACGTTCAATTTTAGTTACC</canonical_amplicon>
		<polymorphic_amplicon>GAAAAGAGTTATGGAATCTGAAATCTGGAATAAAAACAGGCTTAATTATAGGYTTAGAATAATTCTTCATAACTTTGTTTCAACAAGAGAATGAGGTCGGAAATGTTGAAAAAATCGAAAAGAAAATTTTTTTTGGATTTCGAAAAAATGCCTTATAAAATGACTTAGCTTTTTTTTCGATCAAAAAAATGTTTGTCAATTTTTTGAGATTTTTTGTTAAGAAAACGTTTGACGTTCAATTTTAGTTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb744</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1157920</contig_pos>
        <strand>+</strand>
        <context>GCAACCCGGA[A/T]TCTGTCTCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCTATATCATTCAGGCCTGATTTCATTCCGGTAACATACCGCAACCCGGA</left_flank>
        <right_flank>TCTGTCTCTAATGATCTTTCTTTTCTTAGAATCCCAAATTTTCCAGATTT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAATTAGACAAAAAAAGTTTTCTTGATCTACCTAGTTTTTTAAATTTTGAATGGCCTAGATTTTTTTCCCAAATTTTTCGTACTAGTAGAAAAAATCTGAAATTTCAGAAAAAAATGAACAATATTAAAAGAAAAAAAACCGTAAACACTCTAATAGAACGCCACCCAAGCTATCAACTCTGAACTCATATATCTCCATTTCTGTTAAAGATATCGAAAAGCGTTCTACTGACAGATTGTTTATCATAATATCAGCAACATTTTATCAGTGGACCACTTTTTGATATCTCTCAAAGGAAATGAGATACATGGACTTAAATTTGACGATTCGGGTGGCGCTCTATTAGAGTGTTTACGGTAGTTGCAAGCGAACCGACTGATAACATTTCAATAGTACGAGATATTCAGACAGTGCCAATTGATAGATCTTGACAGGGCCCATCATGCCTATATCATTCAGGCCTGATTTCATTCCGGTAACATACCGCAACCCGGATTCTGTCTCTAATGATCTTTCTTTTCTTAGAATCCCAAATTTTCCAGATTTTTCAGACTCTCATCTTTTTTAGCCCAGTTTATCTCGGTTCCTGTAACAGATATCAAAAAAGTGATTAACTGACGAAATGCTTTTGACATTATGATGAACATTTTGTCAATTGACCACTGGGAATATTTTTGCGTTGAGCGATTTCGAATTGAAATTTAGACATTTACATAGAACCAAAATTTACATAGAACCAAATATAGAAACAAAAAGAAAATTCTGAATTTCAGGGGTCTGAAAATAGGTGTTATTGCAGAACCCCCCTCCCCACCTAGTTTTTTACCTCGATTCCTGTTAATCAAAAAGTAATCAACTGATAAAATGTTTTTGATAGTATGATAAGCATTTTGTCAGTTTATCACGATTTGATACCTTTTACAGGAAATGAGATATACGAGCTCAAAGTTGACGGCCCGGGTGGCGTTCTATTAGATTGTTTACTATATTTTTTTG</canonical>
            <polymorphic>GAAAAATTAGACAAAAAAAGTTTTCTTGATCTACCTAGTTTTTTAAATTTTGAATGGCCTAGATTTTTTTCCCAAATTTTTCGTACTAGTAGAAAAAATCTGAAATTTCAGAAAAAAATGAACAATATTAAAAGAAAAAAAACCGTAAACACTCTAATAGAACGCCACCCAAGCTATCAACTCTGAACTCATATATCTCCATTTCTGTTAAAGATATCGAAAAGCGTTCTACTGACAGATTGTTTATCATAATATCAGCAACATTTTATCAGTGGACCACTTTTTGATATCTCTCAAAGGAAATGAGATACATGGACTTAAATTTGACGATTCGGGTGGCGCTCTATTAGAGTGTTTACGGTAGTTGCAAGCGAACCGACTGATAACATTTCAATAGTACGAGATATTCAGACAGTGCCAATTGATAGATCTTGACAGGGCCCATCATGCCTATATCATTCAGGCCTGATTTCATTCCGGTAACATACCGCAACCCGGAWTCTGTCTCTAATGATCTTTCTTTTCTTAGAATCCCAAATTTTCCAGATTTTTCAGACTCTCATCTTTTTTAGCCCAGTTTATCTCGGTTCCTGTAACAGATATCAAAAAAGTGATTAACTGACGAAATGCTTTTGACATTATGATGAACATTTTGTCAATTGACCACTGGGAATATTTTTGCGTTGAGCGATTTCGAATTGAAATTTAGACATTTACATAGAACCAAAATTTACATAGAACCAAATATAGAAACAAAAAGAAAATTCTGAATTTCAGGGGTCTGAAAATAGGTGTTATTGCAGAACCCCCCTCCCCACCTAGTTTTTTACCTCGATTCCTGTTAATCAAAAAGTAATCAACTGATAAAATGTTTTTGATAGTATGATAAGCATTTTGTCAGTTTATCACGATTTGATACCTTTTACAGGAAATGAGATATACGAGCTCAAAGTTGACGGCCCGGGTGGCGTTCTATTAGATTGTTTACTATATTTTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>329 305 169 166 31</canonical_bands>
                <polymorphic_bands>329 305 200 166</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATCATGCCTATATCATTCA</pcr_primer_p1>
		<pcr_primer_p2>TTTTGGTTCTATGTAAATGTCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>288</pcr_amplicon_size>
		<canonical_amplicon>CCATCATGCCTATATCATTCAGGCCTGATTTCATTCCGGTAACATACCGCAACCCGGATTCTGTCTCTAATGATCTTTCTTTTCTTAGAATCCCAAATTTTCCAGATTTTTCAGACTCTCATCTTTTTTAGCCCAGTTTATCTCGGTTCCTGTAACAGATATCAAAAAAGTGATTAACTGACGAAATGCTTTTGACATTATGATGAACATTTTGTCAATTGACCACTGGGAATATTTTTGCGTTGAGCGATTTCGAATTGAAATTTAGACATTTACATAGAACCAAAA</canonical_amplicon>
		<polymorphic_amplicon>CCATCATGCCTATATCATTCAGGCCTGATTTCATTCCGGTAACATACCGCAACCCGGAWTCTGTCTCTAATGATCTTTCTTTTCTTAGAATCCCAAATTTTCCAGATTTTTCAGACTCTCATCTTTTTTAGCCCAGTTTATCTCGGTTCCTGTAACAGATATCAAAAAAGTGATTAACTGACGAAATGCTTTTGACATTATGATGAACATTTTGTCAATTGACCACTGGGAATATTTTTGCGTTGAGCGATTTCGAATTGAAATTTAGACATTTACATAGAACCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb745</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1159932</contig_pos>
        <strand></strand>
        <context>CTACTCCCTT[A/G]TTTTTAGATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTAGGTTCGCTTTTTTCTTCTGTATATATATTTTTTTTCTACTCCCTT</left_flank>
        <right_flank>TTTTTAGATGGATTATGTTTGAACTCAAATATCTGGCTCTCTGTGAAAGT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCTTTCGCAAGAAGACGGATATTTCAGTTTAAACCTATTCCATCTAAAAATCTAGGAAATGTAAACACAGAAGAAAAAAGCAATTTTACACATTTTATTAGTTGGTTAATTTTTGATTAGAAATAAAAATCCCTCCGTGCTAGGTACCAAGAATTCTGAAATCCTGCTAATCCCCAAATCCACTTTATCATAGTTTATCTATAGAAAATACCAACAAAAAAATGCAAAAAAGACTAAAGTTCGCTTATCCCAATTAATATTTTCTTTCAAAAAAAAAAGTTGGAGTTCTTTTTTCCCCTTTTAATGCAATTTTCTTTTTTTATCCCCCCGTTTAATCTGTTGTCACAAATAATAAACTATACACATATCACTCTCAAGGATGTATATATGTTTTCTATTTTCTATTTTTACATGTTTTTTTTCTTTTTTCATCTTATTTTACCTGAAAATTAGGTTCGCTTTTTTCTTCTGTATATATATTTTTTTTCTACTCCCTTATTTTTAGATGGATTATGTTTGAACTCAAATATCTGGCTCTCTGTGAAAGTTATCAAAAAAGGGTTAACTAGCAAAATGTGCAAAATTAAATTTCCTATATTTTATTAGTTAATCTCTTTTTTGTATCTCTTTTAGGAACTGAGATAATAGCTAAAATGTCATTCCCACTTCCTAATGAGCCGCCATTCCTCTACCGAAGAACCGTTAAATTTGACCCCGTATATCTCAGTTCCTAGAAGATATATTTCCAAAAAGTCAACTGATAAAGTGTTCAAAATTCATATTTATGCATTTTTTTGCTTTGTTCTATTTTTCAAACCCATGATATGATGTTAAAGAATGCATCATCCTTATCAATAGGGCGCCTTTTGTCACTTCAAACTAAAATATCTTTGTTCCTGTAAGACATACCAAAAAGTGACCAACTAATAAAATGTGTAAAATTTAACATGCTTTATCAGTTTATTACTTTTTTGAACCTCTTCTAGAAGCTGAGATAA</canonical>
            <polymorphic>TATCTTTCGCAAGAAGACGGATATTTCAGTTTAAACCTATTCCATCTAAAAATCTAGGAAATGTAAACACAGAAGAAAAAAGCAATTTTACACATTTTATTAGTTGGTTAATTTTTGATTAGAAATAAAAATCCCTCCGTGCTAGGTACCAAGAATTCTGAAATCCTGCTAATCCCCAAATCCACTTTATCATAGTTTATCTATAGAAAATACCAACAAAAAAATGCAAAAAAGACTAAAGTTCGCTTATCCCAATTAATATTTTCTTTCAAAAAAAAAAGTTGGAGTTCTTTTTTCCCCTTTTAATGCAATTTTCTTTTTTTATCCCCCCGTTTAATCTGTTGTCACAAATAATAAACTATACACATATCACTCTCAAGGATGTATATATGTTTTCTATTTTCTATTTTTACATGTTTTTTTTCTTTTTTCATCTTATTTTACCTGAAAATTAGGTTCGCTTTTTTCTTCTGTATATATATTTTTTTTCTACTCCCTTRTTTTTAGATGGATTATGTTTGAACTCAAATATCTGGCTCTCTGTGAAAGTTATCAAAAAAGGGTTAACTAGCAAAATGTGCAAAATTAAATTTCCTATATTTTATTAGTTAATCTCTTTTTTGTATCTCTTTTAGGAACTGAGATAATAGCTAAAATGTCATTCCCACTTCCTAATGAGCCGCCATTCCTCTACCGAAGAACCGTTAAATTTGACCCCGTATATCTCAGTTCCTAGAAGATATATTTCCAAAAAGTCAACTGATAAAGTGTTCAAAATTCATATTTATGCATTTTTTTGCTTTGTTCTATTTTTCAAACCCATGATATGATGTTAAAGAATGCATCATCCTTATCAATAGGGCGCCTTTTGTCACTTCAAACTAAAATATCTTTGTTCCTGTAAGACATACCAAAAAGTGACCAACTAATAAAATGTGTAAAATTTAACATGCTTTATCAGTTTATTACTTTTTTGAACCTCTTCTAGAAGCTGAGATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAAAATTAGGTTCGCTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTCATTAGGAAGTGGGAATG</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAATTAGGTTCGCTTTTTTCTTCTGTATATATATTTTTTTTCTACTCCCTTATTTTTAGATGGATTATGTTTGAACTCAAATATCTGGCTCTCTGTGAAAGTTATCAAAAAAGGGTTAACTAGCAAAATGTGCAAAATTAAATTTCCTATATTTTATTAGTTAATCTCTTTTTTGTATCTCTTTTAGGAACTGAGATAATAGCTAAAATGTCATTCCCACTTCCTAATGAG</canonical_amplicon>
		<polymorphic_amplicon>CTGAAAATTAGGTTCGCTTTTTTCTTCTGTATATATATTTTTTTTCTACTCCCTTRTTTTTAGATGGATTATGTTTGAACTCAAATATCTGGCTCTCTGTGAAAGTTATCAAAAAAGGGTTAACTAGCAAAATGTGCAAAATTAAATTTCCTATATTTTATTAGTTAATCTCTTTTTTGTATCTCTTTTAGGAACTGAGATAATAGCTAAAATGTCATTCCCACTTCCTAATGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb746</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1159870</contig_pos>
        <strand>+</strand>
        <context>TTTTCATCTT[A/C]TTTTACCTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATATGTTTTCTATTTTCTATTTTTACATGTTTTTTTTCTTTTTTCATCTT</left_flank>
        <right_flank>TTTTACCTGAAAATTAGGTTCGCTTTTTTCTTCTGTATATATATTTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCCCCACCTTTAAATATAGGAAATTTAATTTTGCACATTTTGCTAGTTAACCCTTTTTTGATATCTTTCGCAAGAAGACGGATATTTCAGTTTAAACCTATTCCATCTAAAAATCTAGGAAATGTAAACACAGAAGAAAAAAGCAATTTTACACATTTTATTAGTTGGTTAATTTTTGATTAGAAATAAAAATCCCTCCGTGCTAGGTACCAAGAATTCTGAAATCCTGCTAATCCCCAAATCCACTTTATCATAGTTTATCTATAGAAAATACCAACAAAAAAATGCAAAAAAGACTAAAGTTCGCTTATCCCAATTAATATTTTCTTTCAAAAAAAAAAGTTGGAGTTCTTTTTTCCCCTTTTAATGCAATTTTCTTTTTTTATCCCCCCGTTTAATCTGTTGTCACAAATAATAAACTATACACATATCACTCTCAAGGATGTATATATGTTTTCTATTTTCTATTTTTACATGTTTTTTTTCTTTTTTCATCTTATTTTACCTGAAAATTAGGTTCGCTTTTTTCTTCTGTATATATATTTTTTTTCTACTCCCTTATTTTTAGATGGATTATGTTTGAACTCAAATATCTGGCTCTCTGTGAAAGTTATCAAAAAAGGGTTAACTAGCAAAATGTGCAAAATTAAATTTCCTATATTTTATTAGTTAATCTCTTTTTTGTATCTCTTTTAGGAACTGAGATAATAGCTAAAATGTCATTCCCACTTCCTAATGAGCCGCCATTCCTCTACCGAAGAACCGTTAAATTTGACCCCGTATATCTCAGTTCCTAGAAGATATATTTCCAAAAAGTCAACTGATAAAGTGTTCAAAATTCATATTTATGCATTTTTTTGCTTTGTTCTATTTTTCAAACCCATGATATGATGTTAAAGAATGCATCATCCTTATCAATAGGGCGCCTTTTGTCACTTCAAACTAAAATATCTTTGTTCCTGTAAGACATACCAAAAAGTGACCAACTAATAAAATGTG</canonical>
            <polymorphic>TCCCCCACCTTTAAATATAGGAAATTTAATTTTGCACATTTTGCTAGTTAACCCTTTTTTGATATCTTTCGCAAGAAGACGGATATTTCAGTTTAAACCTATTCCATCTAAAAATCTAGGAAATGTAAACACAGAAGAAAAAAGCAATTTTACACATTTTATTAGTTGGTTAATTTTTGATTAGAAATAAAAATCCCTCCGTGCTAGGTACCAAGAATTCTGAAATCCTGCTAATCCCCAAATCCACTTTATCATAGTTTATCTATAGAAAATACCAACAAAAAAATGCAAAAAAGACTAAAGTTCGCTTATCCCAATTAATATTTTCTTTCAAAAAAAAAAGTTGGAGTTCTTTTTTCCCCTTTTAATGCAATTTTCTTTTTTTATCCCCCCGTTTAATCTGTTGTCACAAATAATAAACTATACACATATCACTCTCAAGGATGTATATATGTTTTCTATTTTCTATTTTTACATGTTTTTTTTCTTTTTTCATCTTMTTTTACCTGAAAATTAGGTTCGCTTTTTTCTTCTGTATATATATTTTTTTTCTACTCCCTTATTTTTAGATGGATTATGTTTGAACTCAAATATCTGGCTCTCTGTGAAAGTTATCAAAAAAGGGTTAACTAGCAAAATGTGCAAAATTAAATTTCCTATATTTTATTAGTTAATCTCTTTTTTGTATCTCTTTTAGGAACTGAGATAATAGCTAAAATGTCATTCCCACTTCCTAATGAGCCGCCATTCCTCTACCGAAGAACCGTTAAATTTGACCCCGTATATCTCAGTTCCTAGAAGATATATTTCCAAAAAGTCAACTGATAAAGTGTTCAAAATTCATATTTATGCATTTTTTTGCTTTGTTCTATTTTTCAAACCCATGATATGATGTTAAAGAATGCATCATCCTTATCAATAGGGCGCCTTTTGTCACTTCAAACTAAAATATCTTTGTTCCTGTAAGACATACCAAAAAGTGACCAACTAATAAAATGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACATATCACTCTCAAGGATGT</pcr_primer_p1>
		<pcr_primer_p2>ATTAGGAAGTGGGAATGACA</pcr_primer_p2>
		<pcr_amplicon_size>314</pcr_amplicon_size>
		<canonical_amplicon>ACACATATCACTCTCAAGGATGTATATATGTTTTCTATTTTCTATTTTTACATGTTTTTTTTCTTTTTTCATCTTATTTTACCTGAAAATTAGGTTCGCTTTTTTCTTCTGTATATATATTTTTTTTCTACTCCCTTATTTTTAGATGGATTATGTTTGAACTCAAATATCTGGCTCTCTGTGAAAGTTATCAAAAAAGGGTTAACTAGCAAAATGTGCAAAATTAAATTTCCTATATTTTATTAGTTAATCTCTTTTTTGTATCTCTTTTAGGAACTGAGATAATAGCTAAAATGTCATTCCCACTTCCTAAT</canonical_amplicon>
		<polymorphic_amplicon>ACACATATCACTCTCAAGGATGTATATATGTTTTCTATTTTCTATTTTTACATGTTTTTTTTCTTTTTTCATCTTMTTTTACCTGAAAATTAGGTTCGCTTTTTTCTTCTGTATATATATTTTTTTTCTACTCCCTTATTTTTAGATGGATTATGTTTGAACTCAAATATCTGGCTCTCTGTGAAAGTTATCAAAAAAGGGTTAACTAGCAAAATGTGCAAAATTAAATTTCCTATATTTTATTAGTTAATCTCTTTTTTGTATCTCTTTTAGGAACTGAGATAATAGCTAAAATGTCATTCCCACTTCCTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb747</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1159444</contig_pos>
        <strand>+</strand>
        <context>ATCTTTCGCA[A/G]GAAGACGGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTAATTTTGCACATTTTGCTAGTTAACCCTTTTTTGATATCTTTCGCA</left_flank>
        <right_flank>GAAGACGGATATTTCAGTTTAAACCTATTCCATCTAAAAATCTAGGAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTTTATCAGTTGACTTTTTGGAAATTCATCTTCTAGGAACTGAGATATTCGGGGTCAAATTTACCGGTTCTTCGGTAGAGGAATGGCGGCTCATTAGGAAGTTGGAATGACATTTTAGCTATTATCTCAGCTCCTAAAAGAGATACAAAAAAGTGATTAACTAATTAAAGGTGGGGGGAGATGAAAAAAATAATGTTCTCGAAATTCCGCTTAAATATGCCCCTCGAGGAGTTGAACTTGTGGGGGCGAGGATTGAGGGCGCGACGCCGCTACCGACTGAGCTACGCGGACAAAGAGAAAACGGCAGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACTGTTACGGTAGAATGCATACTCTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCACCTTTAAATATAGGAAATTTAATTTTGCACATTTTGCTAGTTAACCCTTTTTTGATATCTTTCGCAAGAAGACGGATATTTCAGTTTAAACCTATTCCATCTAAAAATCTAGGAAATGTAAACACAGAAGAAAAAAGCAATTTTACACATTTTATTAGTTGGTTAATTTTTGATTAGAAATAAAAATCCCTCCGTGCTAGGTACCAAGAATTCTGAAATCCTGCTAATCCCCAAATCCACTTTATCATAGTTTATCTATAGAAAATACCAACAAAAAAATGCAAAAAAGACTAAAGTTCGCTTATCCCAATTAATATTTTCTTTCAAAAAAAAAAGTTGGAGTTCTTTTTTCCCCTTTTAATGCAATTTTCTTTTTTTATCCCCCCGTTTAATCTGTTGTCACAAATAATAAACTATACACATATCACTCTCAAGGATGTATATATGTTTTCTATTTTCTATTTTTACATGTTTTTTTTCTTTTTTCATCTTATTTTACCTGAAAATTAGGTTCGCTTTTTTCTTCTGTATATATATTTTTTTTCTACTCCCTTATTTTTAGATGGA</canonical>
            <polymorphic>CACTTTATCAGTTGACTTTTTGGAAATTCATCTTCTAGGAACTGAGATATTCGGGGTCAAATTTACCGGTTCTTCGGTAGAGGAATGGCGGCTCATTAGGAAGTTGGAATGACATTTTAGCTATTATCTCAGCTCCTAAAAGAGATACAAAAAAGTGATTAACTAATTAAAGGTGGGGGGAGATGAAAAAAATAATGTTCTCGAAATTCCGCTTAAATATGCCCCTCGAGGAGTTGAACTTGTGGGGGCGAGGATTGAGGGCGCGACGCCGCTACCGACTGAGCTACGCGGACAAAGAGAAAACGGCAGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACTGTTACGGTAGAATGCATACTCTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCACCTTTAAATATAGGAAATTTAATTTTGCACATTTTGCTAGTTAACCCTTTTTTGATATCTTTCGCARGAAGACGGATATTTCAGTTTAAACCTATTCCATCTAAAAATCTAGGAAATGTAAACACAGAAGAAAAAAGCAATTTTACACATTTTATTAGTTGGTTAATTTTTGATTAGAAATAAAAATCCCTCCGTGCTAGGTACCAAGAATTCTGAAATCCTGCTAATCCCCAAATCCACTTTATCATAGTTTATCTATAGAAAATACCAACAAAAAAATGCAAAAAAGACTAAAGTTCGCTTATCCCAATTAATATTTTCTTTCAAAAAAAAAAGTTGGAGTTCTTTTTTCCCCTTTTAATGCAATTTTCTTTTTTTATCCCCCCGTTTAATCTGTTGTCACAAATAATAAACTATACACATATCACTCTCAAGGATGTATATATGTTTTCTATTTTCTATTTTTACATGTTTTTTTTCTTTTTTCATCTTATTTTACCTGAAAATTAGGTTCGCTTTTTTCTTCTGTATATATATTTTTTTTCTACTCCCTTATTTTTAGATGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGACATTAAGCGTTGTACACT</pcr_primer_p1>
		<pcr_primer_p2>ACCAACTAATAAAATGTGTAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGTGACATTAAGCGTTGTACACTGTTACGGTAGAATGCATACTCTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCACCTTTAAATATAGGAAATTTAATTTTGCACATTTTGCTAGTTAACCCTTTTTTGATATCTTTCGCAAGAAGACGGATATTTCAGTTTAAACCTATTCCATCTAAAAATCTAGGAAATGTAAACACAGAAGAAAAAAGCAATTTTACACATTTTATTAGTTGGT</canonical_amplicon>
		<polymorphic_amplicon>AGTGACATTAAGCGTTGTACACTGTTACGGTAGAATGCATACTCTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCACCTTTAAATATAGGAAATTTAATTTTGCACATTTTGCTAGTTAACCCTTTTTTGATATCTTTCGCARGAAGACGGATATTTCAGTTTAAACCTATTCCATCTAAAAATCTAGGAAATGTAAACACAGAAGAAAAAAGCAATTTTACACATTTTATTAGTTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb787</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1169496</contig_pos>
        <strand></strand>
        <context>TTTTTTGAAG[A/T]TTGACACTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGGGGTCATTCGGGGGATTACACATTTGTTTGTTTTGGTTTTTTTGAAG</left_flank>
        <right_flank>TTGACACTAATTATCTGGATTCTTACCTAGTAAAATGTTAAAATCAAATT</right_flank>
        <qual_score>46</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTCGGGACCCATTCAGCTTCATCTCTCAACTTTTCCACTTTTTTATACATTTTCTCTGCGTCTCTCGATTCTCTATGCTCTCTCTCTTCTCTTATCACTCCCTCTCCCTATCAATTATCACCTCTCCTTCTCCTAATCACACCAATCTCACGATATCCTCGATTTCTCATGATGTGTGCGTGTGTTTCTCTCTGCGTCTCTCTAAACTCTCCACTCTCTAATCTTTCTAGCTCCGCCCATTGACATTGGGGAACAGCAGAGAGATTCATTCGGAAACCACTATCCAGAAGGAATAGATCCTCGATTCTTTTCTCTGCGTCTCTAGTCTCTATACCATATACGGATATCTCTTATTTTCCTTTCTTTTTTCCCATACAATTCAAAAGTTGTTTAAGCATTTGGGTCGGGATAAGGGGGGCCCGAGATAATGGGATAACTTTCACTTTTTTGGGGTCATTCGGGGGATTACACATTTGTTTGTTTTGGTTTTTTTGAAGATTGACACTAATTATCTGGATTCTTACCTAGTAAAATGTTAAAATCAAATTTTTAATACCTTTTACAGGAGCCAAGATAGTTAGAACCAAAACAGGTGGTATTTTACCTTGTTTAATTTAAAACTAATTATCTTAATTCCTAGAAAAGATATTGAAAAATTGTCCATTAGTAAAATGTTTAAAATTAAATTTTACACATTTTATCAGCCAACAAATTTCTGATATCTTTAACAGGAGCCAAGAAAATCAAAGTCAAAGCAGGCGGAATCTTTTTCGACCCCATTTTTACCTTGTTTAGTTTGACATTAATTATCTCAATTTCTATTTAAGATATCAAAAAATTGTCTACTGATAAAATGTTTAAAATTAAATTTTACACATTTTATCATTTATCGAATTTCAGAAATCATTTACAGGATCCAAGATATTTGGGGTGCAATGCAATCATCCTTGTCACCAACGTTTTTTTTGAACCTAGTTATCTCGGTTCCCAAAAAAGAT</canonical>
            <polymorphic>ACCTCGGGACCCATTCAGCTTCATCTCTCAACTTTTCCACTTTTTTATACATTTTCTCTGCGTCTCTCGATTCTCTATGCTCTCTCTCTTCTCTTATCACTCCCTCTCCCTATCAATTATCACCTCTCCTTCTCCTAATCACACCAATCTCACGATATCCTCGATTTCTCATGATGTGTGCGTGTGTTTCTCTCTGCGTCTCTCTAAACTCTCCACTCTCTAATCTTTCTAGCTCCGCCCATTGACATTGGGGAACAGCAGAGAGATTCATTCGGAAACCACTATCCAGAAGGAATAGATCCTCGATTCTTTTCTCTGCGTCTCTAGTCTCTATACCATATACGGATATCTCTTATTTTCCTTTCTTTTTTCCCATACAATTCAAAAGTTGTTTAAGCATTTGGGTCGGGATAAGGGGGGCCCGAGATAATGGGATAACTTTCACTTTTTTGGGGTCATTCGGGGGATTACACATTTGTTTGTTTTGGTTTTTTTGAAGWTTGACACTAATTATCTGGATTCTTACCTAGTAAAATGTTAAAATCAAATTTTTAATACCTTTTACAGGAGCCAAGATAGTTAGAACCAAAACAGGTGGTATTTTACCTTGTTTAATTTAAAACTAATTATCTTAATTCCTAGAAAAGATATTGAAAAATTGTCCATTAGTAAAATGTTTAAAATTAAATTTTACACATTTTATCAGCCAACAAATTTCTGATATCTTTAACAGGAGCCAAGAAAATCAAAGTCAAAGCAGGCGGAATCTTTTTCGACCCCATTTTTACCTTGTTTAGTTTGACATTAATTATCTCAATTTCTATTTAAGATATCAAAAAATTGTCTACTGATAAAATGTTTAAAATTAAATTTTACACATTTTATCATTTATCGAATTTCAGAAATCATTTACAGGATCCAAGATATTTGGGGTGCAATGCAATCATCCTTGTCACCAACGTTTTTTTTGAACCTAGTTATCTCGGTTCCCAAAAAAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGATATCTCTTATTTTCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTCTAACTATCTTGGCTCCTGTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CGGATATCTCTTATTTTCCTTTCTTTTTTCCCATACAATTCAAAAGTTGTTTAAGCATTTGGGTCGGGATAAGGGGGGCCCGAGATAATGGGATAACTTTCACTTTTTTGGGGTCATTCGGGGGATTACACATTTGTTTGTTTTGGTTTTTTTGAAGATTGACACTAATTATCTGGATTCTTACCTAGTAAAATGTTAAAATCAAATTTTTAATACCTTTTACAGGAGCCAAGATAGTTAGAA</canonical_amplicon>
		<polymorphic_amplicon>CGGATATCTCTTATTTTCCTTTCTTTTTTCCCATACAATTCAAAAGTTGTTTAAGCATTTGGGTCGGGATAAGGGGGGCCCGAGATAATGGGATAACTTTCACTTTTTTGGGGTCATTCGGGGGATTACACATTTGTTTGTTTTGGTTTTTTTGAAGWTTGACACTAATTATCTGGATTCTTACCTAGTAAAATGTTAAAATCAAATTTTTAATACCTTTTACAGGAGCCAAGATAGTTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb788</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1169522</contig_pos>
        <strand>+</strand>
        <context>TGGATTCTTA[A/C]CTAGTAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGTTTGTTTTGGTTTTTTTGAAGATTGACACTAATTATCTGGATTCTTA</left_flank>
        <right_flank>CTAGTAAAATGTTAAAATCAAATTTTTAATACCTTTTACAGGAGCCAAGA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAACTTTTCCACTTTTTTATACATTTTCTCTGCGTCTCTCGATTCTCTATGCTCTCTCTCTTCTCTTATCACTCCCTCTCCCTATCAATTATCACCTCTCCTTCTCCTAATCACACCAATCTCACGATATCCTCGATTTCTCATGATGTGTGCGTGTGTTTCTCTCTGCGTCTCTCTAAACTCTCCACTCTCTAATCTTTCTAGCTCCGCCCATTGACATTGGGGAACAGCAGAGAGATTCATTCGGAAACCACTATCCAGAAGGAATAGATCCTCGATTCTTTTCTCTGCGTCTCTAGTCTCTATACCATATACGGATATCTCTTATTTTCCTTTCTTTTTTCCCATACAATTCAAAAGTTGTTTAAGCATTTGGGTCGGGATAAGGGGGGCCCGAGATAATGGGATAACTTTCACTTTTTTGGGGTCATTCGGGGGATTACACATTTGTTTGTTTTGGTTTTTTTGAAGATTGACACTAATTATCTGGATTCTTACCTAGTAAAATGTTAAAATCAAATTTTTAATACCTTTTACAGGAGCCAAGATAGTTAGAACCAAAACAGGTGGTATTTTACCTTGTTTAATTTAAAACTAATTATCTTAATTCCTAGAAAAGATATTGAAAAATTGTCCATTAGTAAAATGTTTAAAATTAAATTTTACACATTTTATCAGCCAACAAATTTCTGATATCTTTAACAGGAGCCAAGAAAATCAAAGTCAAAGCAGGCGGAATCTTTTTCGACCCCATTTTTACCTTGTTTAGTTTGACATTAATTATCTCAATTTCTATTTAAGATATCAAAAAATTGTCTACTGATAAAATGTTTAAAATTAAATTTTACACATTTTATCATTTATCGAATTTCAGAAATCATTTACAGGATCCAAGATATTTGGGGTGCAATGCAATCATCCTTGTCACCAACGTTTTTTTTGAACCTAGTTATCTCGGTTCCCAAAAAAGATATCGACTAATTGTTAACTGATAAAAT</canonical>
            <polymorphic>CTCAACTTTTCCACTTTTTTATACATTTTCTCTGCGTCTCTCGATTCTCTATGCTCTCTCTCTTCTCTTATCACTCCCTCTCCCTATCAATTATCACCTCTCCTTCTCCTAATCACACCAATCTCACGATATCCTCGATTTCTCATGATGTGTGCGTGTGTTTCTCTCTGCGTCTCTCTAAACTCTCCACTCTCTAATCTTTCTAGCTCCGCCCATTGACATTGGGGAACAGCAGAGAGATTCATTCGGAAACCACTATCCAGAAGGAATAGATCCTCGATTCTTTTCTCTGCGTCTCTAGTCTCTATACCATATACGGATATCTCTTATTTTCCTTTCTTTTTTCCCATACAATTCAAAAGTTGTTTAAGCATTTGGGTCGGGATAAGGGGGGCCCGAGATAATGGGATAACTTTCACTTTTTTGGGGTCATTCGGGGGATTACACATTTGTTTGTTTTGGTTTTTTTGAAGATTGACACTAATTATCTGGATTCTTAMCTAGTAAAATGTTAAAATCAAATTTTTAATACCTTTTACAGGAGCCAAGATAGTTAGAACCAAAACAGGTGGTATTTTACCTTGTTTAATTTAAAACTAATTATCTTAATTCCTAGAAAAGATATTGAAAAATTGTCCATTAGTAAAATGTTTAAAATTAAATTTTACACATTTTATCAGCCAACAAATTTCTGATATCTTTAACAGGAGCCAAGAAAATCAAAGTCAAAGCAGGCGGAATCTTTTTCGACCCCATTTTTACCTTGTTTAGTTTGACATTAATTATCTCAATTTCTATTTAAGATATCAAAAAATTGTCTACTGATAAAATGTTTAAAATTAAATTTTACACATTTTATCATTTATCGAATTTCAGAAATCATTTACAGGATCCAAGATATTTGGGGTGCAATGCAATCATCCTTGTCACCAACGTTTTTTTTGAACCTAGTTATCTCGGTTCCCAAAAAAGATATCGACTAATTGTTAACTGATAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGATATCTCTTATTTTCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTCTAACTATCTTGGCTCCTGTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CGGATATCTCTTATTTTCCTTTCTTTTTTCCCATACAATTCAAAAGTTGTTTAAGCATTTGGGTCGGGATAAGGGGGGCCCGAGATAATGGGATAACTTTCACTTTTTTGGGGTCATTCGGGGGATTACACATTTGTTTGTTTTGGTTTTTTTGAAGATTGACACTAATTATCTGGATTCTTACCTAGTAAAATGTTAAAATCAAATTTTTAATACCTTTTACAGGAGCCAAGATAGTTAGAA</canonical_amplicon>
		<polymorphic_amplicon>CGGATATCTCTTATTTTCCTTTCTTTTTTCCCATACAATTCAAAAGTTGTTTAAGCATTTGGGTCGGGATAAGGGGGGCCCGAGATAATGGGATAACTTTCACTTTTTTGGGGTCATTCGGGGGATTACACATTTGTTTGTTTTGGTTTTTTTGAAGATTGACACTAATTATCTGGATTCTTAMCTAGTAAAATGTTAAAATCAAATTTTTAATACCTTTTACAGGAGCCAAGATAGTTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb808</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1193129</contig_pos>
        <strand></strand>
        <context>TTCACACCAC[C/T]ATTTTCAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATATATTTTTTTTCGATAGCCTATTAGGCGAACCAAGTTCACACCAC</left_flank>
        <right_flank>ATTTTCAGAATCCACGTGGCAAGCTCGGAGCTCAGTGTGAAGTTTCGAAT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAATTTCCCGACCCCCTCTCCCCTAAACCAAGATAACCAAAACCAAAGAAACCCTTCTCAGGACCCCGAAGAAGGAGAAGACGCTACCGAAGAGCCAATTCGAATGAAAGGGCGACTATGCTGTTGTGATGGAACCAATAAATGCAACGAGCAAGCAATGTGGGCGGACGAAGGAATCAGTTTGGATGAGCTCAAAGAAGAAATCGAGAAACGAAAAGTGGCGGTGGGCGGAGTCCCAAATTACGATGGATTCCTCGTTTCTACCCTCTTAGTTTTTGTTGCTATGGCTTTTTGAATTCTTTTTTTTTTTTGAATTATTTTTTGACCCAAGCTTATTGCAGTTCTCTTTTTTTGCTTTCTTTTTTTCTCCAATAAAGCGAATTTATTTTGAAAATTAGACCACAGAAAATGAAACCAAAGGTGACCCGAAATTATTTCAACATTCACAAAATATATTTTTTTTCGATAGCCTATTAGGCGAACCAAGTTCACACCACCATTTTCAGAATCCACGTGGCAAGCTCGGAGCTCAGTGTGAAGTTTCGAATGTTGGCGACAGTCTCGACAGTCGTCGCCTCGTGTTTTAATTGCGATGGAGTGATTTGAGGGTTAAATGGAGAACAGCATTCACAGTAGAGGGGTAGGGTGTCGTGGCGAACGGATCTGCACTTGGCACACTGATGATCCTGGATCTGGTAGGCGGTTAGGAGTTGATTCAGACGATCACAGATCATCATGTCGATGACGTCGGAGTTGAGCTTCTGGAAGGAAACATTTTTGACTTATTTTTAAAGAAATTCTGGCTGCTTGTATTAATTTTTTGGTCTAAAAATGGTCTAATATAGGCCAAAAACGGTCTGAACTGGCCCAAAAAATGGTCTAAAATGGTTCAAAAATGGTCTAAAATAGTCCAAAAATGATCTAAAACGGTCCAAAACAGTCTGGAAAAGCCCCTTTCAGAAATTTTTTGAGCCATTTTAGGGTATTTCGGGCTAATT</canonical>
            <polymorphic>ACCAATTTCCCGACCCCCTCTCCCCTAAACCAAGATAACCAAAACCAAAGAAACCCTTCTCAGGACCCCGAAGAAGGAGAAGACGCTACCGAAGAGCCAATTCGAATGAAAGGGCGACTATGCTGTTGTGATGGAACCAATAAATGCAACGAGCAAGCAATGTGGGCGGACGAAGGAATCAGTTTGGATGAGCTCAAAGAAGAAATCGAGAAACGAAAAGTGGCGGTGGGCGGAGTCCCAAATTACGATGGATTCCTCGTTTCTACCCTCTTAGTTTTTGTTGCTATGGCTTTTTGAATTCTTTTTTTTTTTTGAATTATTTTTTGACCCAAGCTTATTGCAGTTCTCTTTTTTTGCTTTCTTTTTTTCTCCAATAAAGCGAATTTATTTTGAAAATTAGACCACAGAAAATGAAACCAAAGGTGACCCGAAATTATTTCAACATTCACAAAATATATTTTTTTTCGATAGCCTATTAGGCGAACCAAGTTCACACCACYATTTTCAGAATCCACGTGGCAAGCTCGGAGCTCAGTGTGAAGTTTCGAATGTTGGCGACAGTCTCGACAGTCGTCGCCTCGTGTTTTAATTGCGATGGAGTGATTTGAGGGTTAAATGGAGAACAGCATTCACAGTAGAGGGGTAGGGTGTCGTGGCGAACGGATCTGCACTTGGCACACTGATGATCCTGGATCTGGTAGGCGGTTAGGAGTTGATTCAGACGATCACAGATCATCATGTCGATGACGTCGGAGTTGAGCTTCTGGAAGGAAACATTTTTGACTTATTTTTAAAGAAATTCTGGCTGCTTGTATTAATTTTTTGGTCTAAAAATGGTCTAATATAGGCCAAAAACGGTCTGAACTGGCCCAAAAAATGGTCTAAAATGGTTCAAAAATGGTCTAAAATAGTCCAAAAATGATCTAAAACGGTCCAAAACAGTCTGGAAAAGCCCCTTTCAGAAATTTTTTGAGCCATTTTAGGGTATTTCGGGCTAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTAGACCACAGAAAATGA</pcr_primer_p1>
		<pcr_primer_p2>CCTCTACTGTGAATGCTGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTAGACCACAGAAAATGAAACCAAAGGTGACCCGAAATTATTTCAACATTCACAAAATATATTTTTTTTCGATAGCCTATTAGGCGAACCAAGTTCACACCACCATTTTCAGAATCCACGTGGCAAGCTCGGAGCTCAGTGTGAAGTTTCGAATGTTGGCGACAGTCTCGACAGTCGTCGCCTCGTGTTTTAATTGCGATGGAGTGATTTGAGGGTTAAATGGAGAACAGCATTCACAGTAGAGG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTAGACCACAGAAAATGAAACCAAAGGTGACCCGAAATTATTTCAACATTCACAAAATATATTTTTTTTCGATAGCCTATTAGGCGAACCAAGTTCACACCACYATTTTCAGAATCCACGTGGCAAGCTCGGAGCTCAGTGTGAAGTTTCGAATGTTGGCGACAGTCTCGACAGTCGTCGCCTCGTGTTTTAATTGCGATGGAGTGATTTGAGGGTTAAATGGAGAACAGCATTCACAGTAGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb809</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1195118</contig_pos>
        <strand>+</strand>
        <context>AGCCAACAAC[A/G]GTTCTGAACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGACTGTGCTTCTAGCCACTGAAATTTCCAGTATTCCTAGCCAACAAC</left_flank>
        <right_flank>GTTCTGAACGCTTTGAAACTAGCCGAATGATTGCGGTTTAAAGCTAGACT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCGTCTCGCATTATCCCTTACGCCTTCAACAGCCAATTGAGACGTCTGATCACAGGAGAGTGCTCGGCAGATGGCATTGACAAGATACGTGGCACAATGTGCACTTTCTGCGTTGTTATGCACCAGCTTATTGACGACACGATACAACCGATGCGAGATTTTCTGAGAGATGACGTCGGCGCGGAACGTCGCCGCCGATTCCGTATCGAATTGAACTTCTCGATTGGTCTCGAGAAATTCGAGAATAAAGGCGCCGATCATTTGGAGGAACTCATCACGAATATTCGATTCATCTGGCATCTCCTCAGCGATTTTCCAGATGGCTGTGGTCTCGAATTGACGCGTGGCTTGGGGTTGGGAGGAAGAGGAGGTTGGAACGGAGTCGTCGATGACGTCAGGAGAATCAGAATCCTGGAATTATTCAGAATATAGTCTACATTAACCATACATTGACTGTGCTTCTAGCCACTGAAATTTCCAGTATTCCTAGCCAACAACAGTTCTGAACGCTTTGAAACTAGCCGAATGATTGCGGTTTAAAGCTAGACTACAAACTACAAACACTTCTAAGCCTCAGTAAACATTAAGGATTTTACTGAGGCTTAAGTTTTTTGTAGGTTGTAGTCTCTCAATTTTCAAAGCGCCATAACTTGGCTAGTTTTAGACGGTTTAGATTCGTTTTTGGATAGAAATGCAGGAAATTTTGAGGACTACAGACTACACAACTCTCTTAGCCTCAGTAAGCATTGAGGATTTACTGATTTTTAGGTTTTCTTGTAGTTTGTAGTCTCTCAATTTTCAAAGCATCATAACTTTAGACTATTTGGAACTGTTTTTGTATAGAAATCCTGGAAATTTCAAAGACTACAAACTACAAAAACGTTAAGCCTCAGTAAACATTGAGGATTTTACTGAGGCTTAGGTCTTTTTGTAGTTTGTAGTCTCTACATTTTCAAATCACCATAACTTGGCTAGTTTTAGACTGTATGAAACCGTTTT</canonical>
            <polymorphic>GGCGTCTCGCATTATCCCTTACGCCTTCAACAGCCAATTGAGACGTCTGATCACAGGAGAGTGCTCGGCAGATGGCATTGACAAGATACGTGGCACAATGTGCACTTTCTGCGTTGTTATGCACCAGCTTATTGACGACACGATACAACCGATGCGAGATTTTCTGAGAGATGACGTCGGCGCGGAACGTCGCCGCCGATTCCGTATCGAATTGAACTTCTCGATTGGTCTCGAGAAATTCGAGAATAAAGGCGCCGATCATTTGGAGGAACTCATCACGAATATTCGATTCATCTGGCATCTCCTCAGCGATTTTCCAGATGGCTGTGGTCTCGAATTGACGCGTGGCTTGGGGTTGGGAGGAAGAGGAGGTTGGAACGGAGTCGTCGATGACGTCAGGAGAATCAGAATCCTGGAATTATTCAGAATATAGTCTACATTAACCATACATTGACTGTGCTTCTAGCCACTGAAATTTCCAGTATTCCTAGCCAACAACRGTTCTGAACGCTTTGAAACTAGCCGAATGATTGCGGTTTAAAGCTAGACTACAAACTACAAACACTTCTAAGCCTCAGTAAACATTAAGGATTTTACTGAGGCTTAAGTTTTTTGTAGGTTGTAGTCTCTCAATTTTCAAAGCGCCATAACTTGGCTAGTTTTAGACGGTTTAGATTCGTTTTTGGATAGAAATGCAGGAAATTTTGAGGACTACAGACTACACAACTCTCTTAGCCTCAGTAAGCATTGAGGATTTACTGATTTTTAGGTTTTCTTGTAGTTTGTAGTCTCTCAATTTTCAAAGCATCATAACTTTAGACTATTTGGAACTGTTTTTGTATAGAAATCCTGGAAATTTCAAAGACTACAAACTACAAAAACGTTAAGCCTCAGTAAACATTGAGGATTTTACTGAGGCTTAGGTCTTTTTGTAGTTTGTAGTCTCTACATTTTCAAATCACCATAACTTGGCTAGTTTTAGACTGTATGAAACCGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATACATTGACTGTGCTTCTA</pcr_primer_p1>
		<pcr_primer_p2>CCTAAAAATCAGTAAATCCTCAA</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>CCATACATTGACTGTGCTTCTAGCCACTGAAATTTCCAGTATTCCTAGCCAACAACAGTTCTGAACGCTTTGAAACTAGCCGAATGATTGCGGTTTAAAGCTAGACTACAAACTACAAACACTTCTAAGCCTCAGTAAACATTAAGGATTTTACTGAGGCTTAAGTTTTTTGTAGGTTGTAGTCTCTCAATTTTCAAAGCGCCATAACTTGGCTAGTTTTAGACGGTTTAGATTCGTTTTTGGATAGAAATGCAGGAAATTTTGAGGACTACAGACTACACAACTCTCTTAGCCTCAGTAAGCATTGAGGATTTACTGATTTTTAGG</canonical_amplicon>
		<polymorphic_amplicon>CCATACATTGACTGTGCTTCTAGCCACTGAAATTTCCAGTATTCCTAGCCAACAACRGTTCTGAACGCTTTGAAACTAGCCGAATGATTGCGGTTTAAAGCTAGACTACAAACTACAAACACTTCTAAGCCTCAGTAAACATTAAGGATTTTACTGAGGCTTAAGTTTTTTGTAGGTTGTAGTCTCTCAATTTTCAAAGCGCCATAACTTGGCTAGTTTTAGACGGTTTAGATTCGTTTTTGGATAGAAATGCAGGAAATTTTGAGGACTACAGACTACACAACTCTCTTAGCCTCAGTAAGCATTGAGGATTTACTGATTTTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb810</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1195039</contig_pos>
        <strand>+</strand>
        <context>TCCTGGAATT[A/G]TTCAGAATAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTTGGAACGGAGTCGTCGATGACGTCAGGAGAATCAGAATCCTGGAATT</left_flank>
        <right_flank>TTCAGAATATAGTCTACATTAACCATACATTGACTGTGCTTCTAGCCACT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCTCTGGCGCTTCAAACAGCTGGCTGGTGCGTCTTTAGCGCGGTTTAACTTATCACTTACCCACAACATTATGGAGAAGGCGTCTCGCATTATCCCTTACGCCTTCAACAGCCAATTGAGACGTCTGATCACAGGAGAGTGCTCGGCAGATGGCATTGACAAGATACGTGGCACAATGTGCACTTTCTGCGTTGTTATGCACCAGCTTATTGACGACACGATACAACCGATGCGAGATTTTCTGAGAGATGACGTCGGCGCGGAACGTCGCCGCCGATTCCGTATCGAATTGAACTTCTCGATTGGTCTCGAGAAATTCGAGAATAAAGGCGCCGATCATTTGGAGGAACTCATCACGAATATTCGATTCATCTGGCATCTCCTCAGCGATTTTCCAGATGGCTGTGGTCTCGAATTGACGCGTGGCTTGGGGTTGGGAGGAAGAGGAGGTTGGAACGGAGTCGTCGATGACGTCAGGAGAATCAGAATCCTGGAATTATTCAGAATATAGTCTACATTAACCATACATTGACTGTGCTTCTAGCCACTGAAATTTCCAGTATTCCTAGCCAACAACAGTTCTGAACGCTTTGAAACTAGCCGAATGATTGCGGTTTAAAGCTAGACTACAAACTACAAACACTTCTAAGCCTCAGTAAACATTAAGGATTTTACTGAGGCTTAAGTTTTTTGTAGGTTGTAGTCTCTCAATTTTCAAAGCGCCATAACTTGGCTAGTTTTAGACGGTTTAGATTCGTTTTTGGATAGAAATGCAGGAAATTTTGAGGACTACAGACTACACAACTCTCTTAGCCTCAGTAAGCATTGAGGATTTACTGATTTTTAGGTTTTCTTGTAGTTTGTAGTCTCTCAATTTTCAAAGCATCATAACTTTAGACTATTTGGAACTGTTTTTGTATAGAAATCCTGGAAATTTCAAAGACTACAAACTACAAAAACGTTAAGCCTCAGTAAACATTGAGGATTTTACTGAGGCTT</canonical>
            <polymorphic>GCCTCTGGCGCTTCAAACAGCTGGCTGGTGCGTCTTTAGCGCGGTTTAACTTATCACTTACCCACAACATTATGGAGAAGGCGTCTCGCATTATCCCTTACGCCTTCAACAGCCAATTGAGACGTCTGATCACAGGAGAGTGCTCGGCAGATGGCATTGACAAGATACGTGGCACAATGTGCACTTTCTGCGTTGTTATGCACCAGCTTATTGACGACACGATACAACCGATGCGAGATTTTCTGAGAGATGACGTCGGCGCGGAACGTCGCCGCCGATTCCGTATCGAATTGAACTTCTCGATTGGTCTCGAGAAATTCGAGAATAAAGGCGCCGATCATTTGGAGGAACTCATCACGAATATTCGATTCATCTGGCATCTCCTCAGCGATTTTCCAGATGGCTGTGGTCTCGAATTGACGCGTGGCTTGGGGTTGGGAGGAAGAGGAGGTTGGAACGGAGTCGTCGATGACGTCAGGAGAATCAGAATCCTGGAATTRTTCAGAATATAGTCTACATTAACCATACATTGACTGTGCTTCTAGCCACTGAAATTTCCAGTATTCCTAGCCAACAACAGTTCTGAACGCTTTGAAACTAGCCGAATGATTGCGGTTTAAAGCTAGACTACAAACTACAAACACTTCTAAGCCTCAGTAAACATTAAGGATTTTACTGAGGCTTAAGTTTTTTGTAGGTTGTAGTCTCTCAATTTTCAAAGCGCCATAACTTGGCTAGTTTTAGACGGTTTAGATTCGTTTTTGGATAGAAATGCAGGAAATTTTGAGGACTACAGACTACACAACTCTCTTAGCCTCAGTAAGCATTGAGGATTTACTGATTTTTAGGTTTTCTTGTAGTTTGTAGTCTCTCAATTTTCAAAGCATCATAACTTTAGACTATTTGGAACTGTTTTTGTATAGAAATCCTGGAAATTTCAAAGACTACAAACTACAAAAACGTTAAGCCTCAGTAAACATTGAGGATTTTACTGAGGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGAGAAATTCGAGAATAAAG</pcr_primer_p1>
		<pcr_primer_p2>GGAAATTTCAGTGGCTAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTCGAGAAATTCGAGAATAAAGGCGCCGATCATTTGGAGGAACTCATCACGAATATTCGATTCATCTGGCATCTCCTCAGCGATTTTCCAGATGGCTGTGGTCTCGAATTGACGCGTGGCTTGGGGTTGGGAGGAAGAGGAGGTTGGAACGGAGTCGTCGATGACGTCAGGAGAATCAGAATCCTGGAATTATTCAGAATATAGTCTACATTAACCATACATTGACTGTGCTTCTAGCCACTGAAATTTCC</canonical_amplicon>
		<polymorphic_amplicon>CTCGAGAAATTCGAGAATAAAGGCGCCGATCATTTGGAGGAACTCATCACGAATATTCGATTCATCTGGCATCTCCTCAGCGATTTTCCAGATGGCTGTGGTCTCGAATTGACGCGTGGCTTGGGGTTGGGAGGAAGAGGAGGTTGGAACGGAGTCGTCGATGACGTCAGGAGAATCAGAATCCTGGAATTRTTCAGAATATAGTCTACATTAACCATACATTGACTGTGCTTCTAGCCACTGAAATTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb811</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1195022</contig_pos>
        <strand>+</strand>
        <context>CGTCARGAGA[A/T]TCAGAATCCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTTGGGAGGAAGAGGAGGTTGGAACGGAGTCGTCGATGACGTCAGGAGA</left_flank>
        <right_flank>TCAGAATCCTGGAATTATTCAGAATATAGTCTACATTAACCATACATTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCAAACTGTTTCCCGCGCCTCTGGCGCTTCAAACAGCTGGCTGGTGCGTCTTTAGCGCGGTTTAACTTATCACTTACCCACAACATTATGGAGAAGGCGTCTCGCATTATCCCTTACGCCTTCAACAGCCAATTGAGACGTCTGATCACAGGAGAGTGCTCGGCAGATGGCATTGACAAGATACGTGGCACAATGTGCACTTTCTGCGTTGTTATGCACCAGCTTATTGACGACACGATACAACCGATGCGAGATTTTCTGAGAGATGACGTCGGCGCGGAACGTCGCCGCCGATTCCGTATCGAATTGAACTTCTCGATTGGTCTCGAGAAATTCGAGAATAAAGGCGCCGATCATTTGGAGGAACTCATCACGAATATTCGATTCATCTGGCATCTCCTCAGCGATTTTCCAGATGGCTGTGGTCTCGAATTGACGCGTGGCTTGGGGTTGGGAGGAAGAGGAGGTTGGAACGGAGTCGTCGATGACGTCAGGAGAATCAGAATCCTGGAATTATTCAGAATATAGTCTACATTAACCATACATTGACTGTGCTTCTAGCCACTGAAATTTCCAGTATTCCTAGCCAACAACAGTTCTGAACGCTTTGAAACTAGCCGAATGATTGCGGTTTAAAGCTAGACTACAAACTACAAACACTTCTAAGCCTCAGTAAACATTAAGGATTTTACTGAGGCTTAAGTTTTTTGTAGGTTGTAGTCTCTCAATTTTCAAAGCGCCATAACTTGGCTAGTTTTAGACGGTTTAGATTCGTTTTTGGATAGAAATGCAGGAAATTTTGAGGACTACAGACTACACAACTCTCTTAGCCTCAGTAAGCATTGAGGATTTACTGATTTTTAGGTTTTCTTGTAGTTTGTAGTCTCTCAATTTTCAAAGCATCATAACTTTAGACTATTTGGAACTGTTTTTGTATAGAAATCCTGGAAATTTCAAAGACTACAAACTACAAAAACGTTAAGCCTCAGTAAACATTGA</canonical>
            <polymorphic>ACCAAACTGTTTCCCGCGCCTCTGGCGCTTCAAACAGCTGGCTGGTGCGTCTTTAGCGCGGTTTAACTTATCACTTACCCACAACATTATGGAGAAGGCGTCTCGCATTATCCCTTACGCCTTCAACAGCCAATTGAGACGTCTGATCACAGGAGAGTGCTCGGCAGATGGCATTGACAAGATACGTGGCACAATGTGCACTTTCTGCGTTGTTATGCACCAGCTTATTGACGACACGATACAACCGATGCGAGATTTTCTGAGAGATGACGTCGGCGCGGAACGTCGCCGCCGATTCCGTATCGAATTGAACTTCTCGATTGGTCTCGAGAAATTCGAGAATAAAGGCGCCGATCATTTGGAGGAACTCATCACGAATATTCGATTCATCTGGCATCTCCTCAGCGATTTTCCAGATGGCTGTGGTCTCGAATTGACGCGTGGCTTGGGGTTGGGAGGAAGAGGAGGTTGGAACGGAGTCGTCGATGACGTCAGGAGAWTCAGAATCCTGGAATTATTCAGAATATAGTCTACATTAACCATACATTGACTGTGCTTCTAGCCACTGAAATTTCCAGTATTCCTAGCCAACAACAGTTCTGAACGCTTTGAAACTAGCCGAATGATTGCGGTTTAAAGCTAGACTACAAACTACAAACACTTCTAAGCCTCAGTAAACATTAAGGATTTTACTGAGGCTTAAGTTTTTTGTAGGTTGTAGTCTCTCAATTTTCAAAGCGCCATAACTTGGCTAGTTTTAGACGGTTTAGATTCGTTTTTGGATAGAAATGCAGGAAATTTTGAGGACTACAGACTACACAACTCTCTTAGCCTCAGTAAGCATTGAGGATTTACTGATTTTTAGGTTTTCTTGTAGTTTGTAGTCTCTCAATTTTCAAAGCATCATAACTTTAGACTATTTGGAACTGTTTTTGTATAGAAATCCTGGAAATTTCAAAGACTACAAACTACAAAAACGTTAAGCCTCAGTAAACATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>294 266 230 114 90 6</canonical_bands>
                <polymorphic_bands>294 266 230 120 90</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGAACTTCTCGATTGGTCT</pcr_primer_p1>
		<pcr_primer_p2>AGCACAGTCAATGTATGGTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTGAACTTCTCGATTGGTCTCGAGAAATTCGAGAATAAAGGCGCCGATCATTTGGAGGAACTCATCACGAATATTCGATTCATCTGGCATCTCCTCAGCGATTTTCCAGATGGCTGTGGTCTCGAATTGACGCGTGGCTTGGGGTTGGGAGGAAGAGGAGGTTGGAACGGAGTCGTCGATGACGTCAGGAGAATCAGAATCCTGGAATTATTCAGAATATAGTCTACATTAACCATACATTGACTGTGCT</canonical_amplicon>
		<polymorphic_amplicon>ATTGAACTTCTCGATTGGTCTCGAGAAATTCGAGAATAAAGGCGCCGATCATTTGGAGGAACTCATCACGAATATTCGATTCATCTGGCATCTCCTCAGCGATTTTCCAGATGGCTGTGGTCTCGAATTGACGCGTGGCTTGGGGTTGGGAGGAAGAGGAGGTTGGAACGGAGTCGTCGATGACGTCAGGAGAWTCAGAATCCTGGAATTATTCAGAATATAGTCTACATTAACCATACATTGACTGTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb812</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1195017</contig_pos>
        <strand>+</strand>
        <context>GATGACGTCA[A/G]GAGAWTCAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTGGGGTTGGGAGGAAGAGGAGGTTGGAACGGAGTCGTCGATGACGTCA</left_flank>
        <right_flank>GAGAATCAGAATCCTGGAATTATTCAGAATATAGTCTACATTAACCATAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATATACCAAACTGTTTCCCGCGCCTCTGGCGCTTCAAACAGCTGGCTGGTGCGTCTTTAGCGCGGTTTAACTTATCACTTACCCACAACATTATGGAGAAGGCGTCTCGCATTATCCCTTACGCCTTCAACAGCCAATTGAGACGTCTGATCACAGGAGAGTGCTCGGCAGATGGCATTGACAAGATACGTGGCACAATGTGCACTTTCTGCGTTGTTATGCACCAGCTTATTGACGACACGATACAACCGATGCGAGATTTTCTGAGAGATGACGTCGGCGCGGAACGTCGCCGCCGATTCCGTATCGAATTGAACTTCTCGATTGGTCTCGAGAAATTCGAGAATAAAGGCGCCGATCATTTGGAGGAACTCATCACGAATATTCGATTCATCTGGCATCTCCTCAGCGATTTTCCAGATGGCTGTGGTCTCGAATTGACGCGTGGCTTGGGGTTGGGAGGAAGAGGAGGTTGGAACGGAGTCGTCGATGACGTCAGGAGAATCAGAATCCTGGAATTATTCAGAATATAGTCTACATTAACCATACATTGACTGTGCTTCTAGCCACTGAAATTTCCAGTATTCCTAGCCAACAACAGTTCTGAACGCTTTGAAACTAGCCGAATGATTGCGGTTTAAAGCTAGACTACAAACTACAAACACTTCTAAGCCTCAGTAAACATTAAGGATTTTACTGAGGCTTAAGTTTTTTGTAGGTTGTAGTCTCTCAATTTTCAAAGCGCCATAACTTGGCTAGTTTTAGACGGTTTAGATTCGTTTTTGGATAGAAATGCAGGAAATTTTGAGGACTACAGACTACACAACTCTCTTAGCCTCAGTAAGCATTGAGGATTTACTGATTTTTAGGTTTTCTTGTAGTTTGTAGTCTCTCAATTTTCAAAGCATCATAACTTTAGACTATTTGGAACTGTTTTTGTATAGAAATCCTGGAAATTTCAAAGACTACAAACTACAAAAACGTTAAGCCTCAGTAAAC</canonical>
            <polymorphic>TATATACCAAACTGTTTCCCGCGCCTCTGGCGCTTCAAACAGCTGGCTGGTGCGTCTTTAGCGCGGTTTAACTTATCACTTACCCACAACATTATGGAGAAGGCGTCTCGCATTATCCCTTACGCCTTCAACAGCCAATTGAGACGTCTGATCACAGGAGAGTGCTCGGCAGATGGCATTGACAAGATACGTGGCACAATGTGCACTTTCTGCGTTGTTATGCACCAGCTTATTGACGACACGATACAACCGATGCGAGATTTTCTGAGAGATGACGTCGGCGCGGAACGTCGCCGCCGATTCCGTATCGAATTGAACTTCTCGATTGGTCTCGAGAAATTCGAGAATAAAGGCGCCGATCATTTGGAGGAACTCATCACGAATATTCGATTCATCTGGCATCTCCTCAGCGATTTTCCAGATGGCTGTGGTCTCGAATTGACGCGTGGCTTGGGGTTGGGAGGAAGAGGAGGTTGGAACGGAGTCGTCGATGACGTCARGAGAATCAGAATCCTGGAATTATTCAGAATATAGTCTACATTAACCATACATTGACTGTGCTTCTAGCCACTGAAATTTCCAGTATTCCTAGCCAACAACAGTTCTGAACGCTTTGAAACTAGCCGAATGATTGCGGTTTAAAGCTAGACTACAAACTACAAACACTTCTAAGCCTCAGTAAACATTAAGGATTTTACTGAGGCTTAAGTTTTTTGTAGGTTGTAGTCTCTCAATTTTCAAAGCGCCATAACTTGGCTAGTTTTAGACGGTTTAGATTCGTTTTTGGATAGAAATGCAGGAAATTTTGAGGACTACAGACTACACAACTCTCTTAGCCTCAGTAAGCATTGAGGATTTACTGATTTTTAGGTTTTCTTGTAGTTTGTAGTCTCTCAATTTTCAAAGCATCATAACTTTAGACTATTTGGAACTGTTTTTGTATAGAAATCCTGGAAATTTCAAAGACTACAAACTACAAAAACGTTAAGCCTCAGTAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGAACTTCTCGATTGGTCT</pcr_primer_p1>
		<pcr_primer_p2>AGCACAGTCAATGTATGGTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTGAACTTCTCGATTGGTCTCGAGAAATTCGAGAATAAAGGCGCCGATCATTTGGAGGAACTCATCACGAATATTCGATTCATCTGGCATCTCCTCAGCGATTTTCCAGATGGCTGTGGTCTCGAATTGACGCGTGGCTTGGGGTTGGGAGGAAGAGGAGGTTGGAACGGAGTCGTCGATGACGTCAGGAGAATCAGAATCCTGGAATTATTCAGAATATAGTCTACATTAACCATACATTGACTGTGCT</canonical_amplicon>
		<polymorphic_amplicon>ATTGAACTTCTCGATTGGTCTCGAGAAATTCGAGAATAAAGGCGCCGATCATTTGGAGGAACTCATCACGAATATTCGATTCATCTGGCATCTCCTCAGCGATTTTCCAGATGGCTGTGGTCTCGAATTGACGCGTGGCTTGGGGTTGGGAGGAAGAGGAGGTTGGAACGGAGTCGTCGATGACGTCARGAGAATCAGAATCCTGGAATTATTCAGAATATAGTCTACATTAACCATACATTGACTGTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb832</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1224083</contig_pos>
        <strand>+</strand>
        <context>GAACTATCAG[A/C]TGCTCAGAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACTTTTCGTAATCATTGATTTCGGTGAGCACGTCGCGCTGGAACTATCAG</left_flank>
        <right_flank>TGCTCAGAAGGATGTCGCTGAAATTTTGGCTGAAATTAATCGATTAATCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTCCGTCCGTTTTCAACGATTTTTAATCAAAATTAATGGTATTATTTAGTTTACTGAGGCTAAGACTACAAACTACACAACCTTCTCAGCCTCAGTTAAACTTCAAACCGTTCTAACTCGGCTCATTTTCAAGCGTTTTCTATGATTTTTGGCTCAAAATTTTTCCCATTTTTTAGAGTTTTCTCAAAGACTACAAACTACAAATTCCCCTCAGTGAACAAATTATTTTTCAGCGCATTTCACAACGGAAAAATGAGTATTTCGGAGGTTCGCGGCTTGGACCGCCTGATTAGGTCTCGAACGGAAAAAGAGAGACGGGCGGCGTTCGGACAAATGCGTGGCGGTACACGGGCGGTTGAAATACGGTGGGTATCAGCAAGTGCGCTCTGTTGAATAGCTCGAAAATTTTGAAAATTTCAGCAAAAAACTGGTCGAAATTCTGTCGAAACTTTTCGTAATCATTGATTTCGGTGAGCACGTCGCGCTGGAACTATCAGCTGCTCAGAAGGATGTCGCTGAAATTTTGGCTGAAATTAATCGATTAATCTTGGCATGGGAGGGGGCGGAGCGTGCGCAACGTGGATTGGAAATTGTGTTATATGGGCGGCCGAATTCCGGAAAATCCAGTATTCTGAACCAGTTGGCACATGATGACGTGGCAATTGTTAGCGAGATTCCCGGAACGACGAGGGATAGTTTAGTGGTAATTTTTGAATGTGTTTTTTTTTCAAAGTTTCAAATTTCCGCCAGACCACAATCCAAATCAACGGAATCCGTTGCCGGCTAACCGACACCGCCGGCATCCGTCCTCACACCAATGACGTCATCGAAGCAGAAGGAATTCGAAGAGCTCAACGACGTCTAGAATCTGCCGACGTCATCTGCTTCGTCGTGGATCCAGAATCCAGAAGTGATGACGTGGCAAATATCCTGGAGGATGTGAAGAAGTTGAAAAATCCAGAATCCAAAGTGTTAATTGTGAAGAACAAGGCGGATTT</canonical>
            <polymorphic>GTTTCCGTCCGTTTTCAACGATTTTTAATCAAAATTAATGGTATTATTTAGTTTACTGAGGCTAAGACTACAAACTACACAACCTTCTCAGCCTCAGTTAAACTTCAAACCGTTCTAACTCGGCTCATTTTCAAGCGTTTTCTATGATTTTTGGCTCAAAATTTTTCCCATTTTTTAGAGTTTTCTCAAAGACTACAAACTACAAATTCCCCTCAGTGAACAAATTATTTTTCAGCGCATTTCACAACGGAAAAATGAGTATTTCGGAGGTTCGCGGCTTGGACCGCCTGATTAGGTCTCGAACGGAAAAAGAGAGACGGGCGGCGTTCGGACAAATGCGTGGCGGTACACGGGCGGTTGAAATACGGTGGGTATCAGCAAGTGCGCTCTGTTGAATAGCTCGAAAATTTTGAAAATTTCAGCAAAAAACTGGTCGAAATTCTGTCGAAACTTTTCGTAATCATTGATTTCGGTGAGCACGTCGCGCTGGAACTATCAGMTGCTCAGAAGGATGTCGCTGAAATTTTGGCTGAAATTAATCGATTAATCTTGGCATGGGAGGGGGCGGAGCGTGCGCAACGTGGATTGGAAATTGTGTTATATGGGCGGCCGAATTCCGGAAAATCCAGTATTCTGAACCAGTTGGCACATGATGACGTGGCAATTGTTAGCGAGATTCCCGGAACGACGAGGGATAGTTTAGTGGTAATTTTTGAATGTGTTTTTTTTTCAAAGTTTCAAATTTCCGCCAGACCACAATCCAAATCAACGGAATCCGTTGCCGGCTAACCGACACCGCCGGCATCCGTCCTCACACCAATGACGTCATCGAAGCAGAAGGAATTCGAAGAGCTCAACGACGTCTAGAATCTGCCGACGTCATCTGCTTCGTCGTGGATCCAGAATCCAGAAGTGATGACGTGGCAAATATCCTGGAGGATGTGAAGAAGTTGAAAAATCCAGAATCCAAAGTGTTAATTGTGAAGAACAAGGCGGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>399 353 148 100</canonical_bands>
                <polymorphic_bands>453 399 148</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>391 277 178 107 47</canonical_bands>
                <polymorphic_bands>391 285 277 47</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>176 148 123 122 100 80 67 61 32 31 30 30</canonical_bands>
                <polymorphic_bands>176 148 130 123 122 80 67 61 32 31 30</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGAAATACGGTGGGTATC</pcr_primer_p1>
		<pcr_primer_p2>ATATAACACAATTTCCAATCCAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTTGAAATACGGTGGGTATCAGCAAGTGCGCTCTGTTGAATAGCTCGAAAATTTTGAAAATTTCAGCAAAAAACTGGTCGAAATTCTGTCGAAACTTTTCGTAATCATTGATTTCGGTGAGCACGTCGCGCTGGAACTATCAGCTGCTCAGAAGGATGTCGCTGAAATTTTGGCTGAAATTAATCGATTAATCTTGGCATGGGAGGGGGCGGAGCGTGCGCAACGTGGATTGGAAATTGTGTTATAT</canonical_amplicon>
		<polymorphic_amplicon>GTTGAAATACGGTGGGTATCAGCAAGTGCGCTCTGTTGAATAGCTCGAAAATTTTGAAAATTTCAGCAAAAAACTGGTCGAAATTCTGTCGAAACTTTTCGTAATCATTGATTTCGGTGAGCACGTCGCGCTGGAACTATCAGMTGCTCAGAAGGATGTCGCTGAAATTTTGGCTGAAATTAATCGATTAATCTTGGCATGGGAGGGGGCGGAGCGTGCGCAACGTGGATTGGAAATTGTGTTATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb833</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1227977</contig_pos>
        <strand></strand>
        <context>ccaaactggc[A/G]aagtcgagct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAAGTCAAATTACTGTGTTCCTCGCTAATAGAAGCCCACCCAAACTGGC</left_flank>
        <right_flank>AAGTCGAGCTCAATTATCTCGATTCCTGTAAGAGATATCAAAAAGTGGTC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGAAGAAACCTGAAACTTAAAACGGCATGAAGGGGGATTATTTTTCACCTGTTTCAAGCTTTTCAAGTTTTTCAAAAAATTTTCACTTCCAAAAAAGTTGAAAAGTTGTCAAACAGCGAAAAGAAGAATGCTGCAAAATTTTAGATATTTTTCGAATTTTCTTAACAAATTGGATATTTTTGGAAAATTCAAAAATTAGTTTTTTTTTTAGTTTTTCAAAAATTCCTTATTTTTTCTGTTTGGGTTTTAAAAACTGGAAATTTTTAATTTTTCCAAGAATTCGAAAACATTTAATTTTCAGCCTAAAATCTGAAATTTTCCACAATTTTTCAGCTTTTCAGATTTTTCCACTTTTTCGAATAAATTCTCAATTTCCATTTTCAACCGCTTTGCAGTTACTGTAGAAGCTAAAAACCCTTCAAAACTACAGTATTCCCATTTTGCGTTAAAGTCAAATTACTGTGTTCCTCGCTAATAGAAGCCCACCCAAACTGGCAAAGTCGAGCTCAATTATCTCGATTCCTGTAAGAGATATCAAAAAGTGGTCAAATGAAAAAATGTTGCTGATTTTATGATAAACATTTGGCCAGTTAACAGATTTTTGTTATCTCTTACAGAAAATGAGATAATTCAGCTCAAATTTTAAAAAAATCCGCGCTTGCAGCAGCGGCTGCGGACATCTGAACTTTGAGGCATTCTATCTCAGTTCCTATCAGAGATATCAAAAAGTAGTAAACTGATGAAATATTTTTGATATTATGATAAACATTTTATCAGTTTACAAATTTTTGCTATCTCTCATAGGAGCCGAGATAATTGGCTCAAAGTAGACCATTTGGGCGGGCTGCTAAATACGGTAATAAGGCGCGAAATGAGTATAATGTCGTTGTTAAGCGATTTAAACACAAGTTCTGAATTTTTTTATTTAACGAATATTTATAAATGTTCCAACCCAAAAGAAAAAAGTATATTCATTGCTCCTCCATTCATTGCCCAA</canonical>
            <polymorphic>TTTCGAAGAAACCTGAAACTTAAAACGGCATGAAGGGGGATTATTTTTCACCTGTTTCAAGCTTTTCAAGTTTTTCAAAAAATTTTCACTTCCAAAAAAGTTGAAAAGTTGTCAAACAGCGAAAAGAAGAATGCTGCAAAATTTTAGATATTTTTCGAATTTTCTTAACAAATTGGATATTTTTGGAAAATTCAAAAATTAGTTTTTTTTTTAGTTTTTCAAAAATTCCTTATTTTTTCTGTTTGGGTTTTAAAAACTGGAAATTTTTAATTTTTCCAAGAATTCGAAAACATTTAATTTTCAGCCTAAAATCTGAAATTTTCCACAATTTTTCAGCTTTTCAGATTTTTCCACTTTTTCGAATAAATTCTCAATTTCCATTTTCAACCGCTTTGCAGTTACTGTAGAAGCTAAAAACCCTTCAAAACTACAGTATTCCCATTTTGCGTTAAAGTCAAATTACTGTGTTCCTCGCTAATAGAAGCCCACCCAAACTGGCRAAGTCGAGCTCAATTATCTCGATTCCTGTAAGAGATATCAAAAAGTGGTCAAATGAAAAAATGTTGCTGATTTTATGATAAACATTTGGCCAGTTAACAGATTTTTGTTATCTCTTACAGAAAATGAGATAATTCAGCTCAAATTTTAAAAAAATCCGCGCTTGCAGCAGCGGCTGCGGACATCTGAACTTTGAGGCATTCTATCTCAGTTCCTATCAGAGATATCAAAAAGTAGTAAACTGATGAAATATTTTTGATATTATGATAAACATTTTATCAGTTTACAAATTTTTGCTATCTCTCATAGGAGCCGAGATAATTGGCTCAAAGTAGACCATTTGGGCGGGCTGCTAAATACGGTAATAAGGCGCGAAATGAGTATAATGTCGTTGTTAAGCGATTTAAACACAAGTTCTGAATTTTTTTATTTAACGAATATTTATAAATGTTCCAACCCAAAAGAAAAAAGTATATTCATTGCTCCTCCATTCATTGCCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGTTAAAGTCAAATTACTGTGT</pcr_primer_p1>
		<pcr_primer_p2>TATACTCATTTCGCGCCTTA</pcr_primer_p2>
		<pcr_amplicon_size>438</pcr_amplicon_size>
		<canonical_amplicon>GCGTTAAAGTCAAATTACTGTGTTCCTCGCTAATAGAAGCCCACCCAAACTGGCAAAGTCGAGCTCAATTATCTCGATTCCTGTAAGAGATATCAAAAAGTGGTCAAATGAAAAAATGTTGCTGATTTTATGATAAACATTTGGCCAGTTAACAGATTTTTGTTATCTCTTACAGAAAATGAGATAATTCAGCTCAAATTTTAAAAAAATCCGCGCTTGCAGCAGCGGCTGCGGACATCTGAACTTTGAGGCATTCTATCTCAGTTCCTATCAGAGATATCAAAAAGTAGTAAACTGATGAAATATTTTTGATATTATGATAAACATTTTATCAGTTTACAAATTTTTGCTATCTCTCATAGGAGCCGAGATAATTGGCTCAAAGTAGACCATTTGGGCGGGCTGCTAAATACGGTAATAAGGCGCGAAATGAGTATA</canonical_amplicon>
		<polymorphic_amplicon>GCGTTAAAGTCAAATTACTGTGTTCCTCGCTAATAGAAGCCCACCCAAACTGGCRAAGTCGAGCTCAATTATCTCGATTCCTGTAAGAGATATCAAAAAGTGGTCAAATGAAAAAATGTTGCTGATTTTATGATAAACATTTGGCCAGTTAACAGATTTTTGTTATCTCTTACAGAAAATGAGATAATTCAGCTCAAATTTTAAAAAAATCCGCGCTTGCAGCAGCGGCTGCGGACATCTGAACTTTGAGGCATTCTATCTCAGTTCCTATCAGAGATATCAAAAAGTAGTAAACTGATGAAATATTTTTGATATTATGATAAACATTTTATCAGTTTACAAATTTTTGCTATCTCTCATAGGAGCCGAGATAATTGGCTCAAAGTAGACCATTTGGGCGGGCTGCTAAATACGGTAATAAGGCGCGAAATGAGTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb834</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1227961</contig_pos>
        <strand></strand>
        <context>GCtaatagaa[G/A]cccacccaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TATTCCCATTTTGCGTTAAAGTCAAATTACTGTGTTCCTCGCTAATAGAA</left_flank>
        <right_flank>CCCACCCAAACTGGCAAAGTCGAGCTCAATTATCTCGATTCCTGTAAGAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGTCTTTTCTGTGTTTTCGAAGAAACCTGAAACTTAAAACGGCATGAAGGGGGATTATTTTTCACCTGTTTCAAGCTTTTCAAGTTTTTCAAAAAATTTTCACTTCCAAAAAAGTTGAAAAGTTGTCAAACAGCGAAAAGAAGAATGCTGCAAAATTTTAGATATTTTTCGAATTTTCTTAACAAATTGGATATTTTTGGAAAATTCAAAAATTAGTTTTTTTTTTAGTTTTTCAAAAATTCCTTATTTTTTCTGTTTGGGTTTTAAAAACTGGAAATTTTTAATTTTTCCAAGAATTCGAAAACATTTAATTTTCAGCCTAAAATCTGAAATTTTCCACAATTTTTCAGCTTTTCAGATTTTTCCACTTTTTCGAATAAATTCTCAATTTCCATTTTCAACCGCTTTGCAGTTACTGTAGAAGCTAAAAACCCTTCAAAACTACAGTATTCCCATTTTGCGTTAAAGTCAAATTACTGTGTTCCTCGCTAATAGAAGCCCACCCAAACTGGCAAAGTCGAGCTCAATTATCTCGATTCCTGTAAGAGATATCAAAAAGTGGTCAAATGAAAAAATGTTGCTGATTTTATGATAAACATTTGGCCAGTTAACAGATTTTTGTTATCTCTTACAGAAAATGAGATAATTCAGCTCAAATTTTAAAAAAATCCGCGCTTGCAGCAGCGGCTGCGGACATCTGAACTTTGAGGCATTCTATCTCAGTTCCTATCAGAGATATCAAAAAGTAGTAAACTGATGAAATATTTTTGATATTATGATAAACATTTTATCAGTTTACAAATTTTTGCTATCTCTCATAGGAGCCGAGATAATTGGCTCAAAGTAGACCATTTGGGCGGGCTGCTAAATACGGTAATAAGGCGCGAAATGAGTATAATGTCGTTGTTAAGCGATTTAAACACAAGTTCTGAATTTTTTTATTTAACGAATATTTATAAATGTTCCAACCCAAAAGAAAAAAGTATATTCATTGCTCC</canonical>
            <polymorphic>TTTGTCTTTTCTGTGTTTTCGAAGAAACCTGAAACTTAAAACGGCATGAAGGGGGATTATTTTTCACCTGTTTCAAGCTTTTCAAGTTTTTCAAAAAATTTTCACTTCCAAAAAAGTTGAAAAGTTGTCAAACAGCGAAAAGAAGAATGCTGCAAAATTTTAGATATTTTTCGAATTTTCTTAACAAATTGGATATTTTTGGAAAATTCAAAAATTAGTTTTTTTTTTAGTTTTTCAAAAATTCCTTATTTTTTCTGTTTGGGTTTTAAAAACTGGAAATTTTTAATTTTTCCAAGAATTCGAAAACATTTAATTTTCAGCCTAAAATCTGAAATTTTCCACAATTTTTCAGCTTTTCAGATTTTTCCACTTTTTCGAATAAATTCTCAATTTCCATTTTCAACCGCTTTGCAGTTACTGTAGAAGCTAAAAACCCTTCAAAACTACAGTATTCCCATTTTGCGTTAAAGTCAAATTACTGTGTTCCTCGCTAATAGAARCCCACCCAAACTGGCAAAGTCGAGCTCAATTATCTCGATTCCTGTAAGAGATATCAAAAAGTGGTCAAATGAAAAAATGTTGCTGATTTTATGATAAACATTTGGCCAGTTAACAGATTTTTGTTATCTCTTACAGAAAATGAGATAATTCAGCTCAAATTTTAAAAAAATCCGCGCTTGCAGCAGCGGCTGCGGACATCTGAACTTTGAGGCATTCTATCTCAGTTCCTATCAGAGATATCAAAAAGTAGTAAACTGATGAAATATTTTTGATATTATGATAAACATTTTATCAGTTTACAAATTTTTGCTATCTCTCATAGGAGCCGAGATAATTGGCTCAAAGTAGACCATTTGGGCGGGCTGCTAAATACGGTAATAAGGCGCGAAATGAGTATAATGTCGTTGTTAAGCGATTTAAACACAAGTTCTGAATTTTTTTATTTAACGAATATTTATAAATGTTCCAACCCAAAAGAAAAAAGTATATTCATTGCTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>243 137 137 81 77 74 74 48 36 32 24 24 13</canonical_bands>
                <polymorphic_bands>243 137 137 98 81 77 74 48 36 32 24 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTATTCCCATTTTGCGTTA</pcr_primer_p1>
		<pcr_primer_p2>TATACTCATTTCGCGCCTTA</pcr_primer_p2>
		<pcr_amplicon_size>452</pcr_amplicon_size>
		<canonical_amplicon>AGTATTCCCATTTTGCGTTAAAGTCAAATTACTGTGTTCCTCGCTAATAGAAGCCCACCCAAACTGGCAAAGTCGAGCTCAATTATCTCGATTCCTGTAAGAGATATCAAAAAGTGGTCAAATGAAAAAATGTTGCTGATTTTATGATAAACATTTGGCCAGTTAACAGATTTTTGTTATCTCTTACAGAAAATGAGATAATTCAGCTCAAATTTTAAAAAAATCCGCGCTTGCAGCAGCGGCTGCGGACATCTGAACTTTGAGGCATTCTATCTCAGTTCCTATCAGAGATATCAAAAAGTAGTAAACTGATGAAATATTTTTGATATTATGATAAACATTTTATCAGTTTACAAATTTTTGCTATCTCTCATAGGAGCCGAGATAATTGGCTCAAAGTAGACCATTTGGGCGGGCTGCTAAATACGGTAATAAGGCGCGAAATGAGTATA</canonical_amplicon>
		<polymorphic_amplicon>AGTATTCCCATTTTGCGTTAAAGTCAAATTACTGTGTTCCTCGCTAATAGAARCCCACCCAAACTGGCAAAGTCGAGCTCAATTATCTCGATTCCTGTAAGAGATATCAAAAAGTGGTCAAATGAAAAAATGTTGCTGATTTTATGATAAACATTTGGCCAGTTAACAGATTTTTGTTATCTCTTACAGAAAATGAGATAATTCAGCTCAAATTTTAAAAAAATCCGCGCTTGCAGCAGCGGCTGCGGACATCTGAACTTTGAGGCATTCTATCTCAGTTCCTATCAGAGATATCAAAAAGTAGTAAACTGATGAAATATTTTTGATATTATGATAAACATTTTATCAGTTTACAAATTTTTGCTATCTCTCATAGGAGCCGAGATAATTGGCTCAAAGTAGACCATTTGGGCGGGCTGCTAAATACGGTAATAAGGCGCGAAATGAGTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb835</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1227800</contig_pos>
        <strand></strand>
        <context>CTGAAATTTT[C/T]CACAATTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCCAAGAATTCGAAAACATTTAATTTTCAGCCTAAAATCTGAAATTTT</left_flank>
        <right_flank>CACAATTTTTCAGCTTTTCAGATTTTTCCACTTTTTCGAATAAATTCTCA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTCAGATTTTCAGAAGAATCTTTTTGAAAAGTTCCACGTTGCAAATTGAAGATTACTGTAGGTAGAGTAACCCTGAAAGGTTTCAGGCTAAAACAAAAGAACGGACATACAGACACACTTACAGAGTAAACAGGAAAGCAATGAAAACATTTTGTAGTTTGTCTTTTCTGTGTTTTCGAAGAAACCTGAAACTTAAAACGGCATGAAGGGGGATTATTTTTCACCTGTTTCAAGCTTTTCAAGTTTTTCAAAAAATTTTCACTTCCAAAAAAGTTGAAAAGTTGTCAAACAGCGAAAAGAAGAATGCTGCAAAATTTTAGATATTTTTCGAATTTTCTTAACAAATTGGATATTTTTGGAAAATTCAAAAATTAGTTTTTTTTTTAGTTTTTCAAAAATTCCTTATTTTTTCTGTTTGGGTTTTAAAAACTGGAAATTTTTAATTTTTCCAAGAATTCGAAAACATTTAATTTTCAGCCTAAAATCTGAAATTTTCCACAATTTTTCAGCTTTTCAGATTTTTCCACTTTTTCGAATAAATTCTCAATTTCCATTTTCAACCGCTTTGCAGTTACTGTAGAAGCTAAAAACCCTTCAAAACTACAGTATTCCCATTTTGCGTTAAAGTCAAATTACTGTGTTCCTCGCTAATAGAAGCCCACCCAAACTGGCAAAGTCGAGCTCAATTATCTCGATTCCTGTAAGAGATATCAAAAAGTGGTCAAATGAAAAAATGTTGCTGATTTTATGATAAACATTTGGCCAGTTAACAGATTTTTGTTATCTCTTACAGAAAATGAGATAATTCAGCTCAAATTTTAAAAAAATCCGCGCTTGCAGCAGCGGCTGCGGACATCTGAACTTTGAGGCATTCTATCTCAGTTCCTATCAGAGATATCAAAAAGTAGTAAACTGATGAAATATTTTTGATATTATGATAAACATTTTATCAGTTTACAAATTTTTGCTATCTCTCATAGGAGCCGAGATAATTGG</canonical>
            <polymorphic>AATTTTCAGATTTTCAGAAGAATCTTTTTGAAAAGTTCCACGTTGCAAATTGAAGATTACTGTAGGTAGAGTAACCCTGAAAGGTTTCAGGCTAAAACAAAAGAACGGACATACAGACACACTTACAGAGTAAACAGGAAAGCAATGAAAACATTTTGTAGTTTGTCTTTTCTGTGTTTTCGAAGAAACCTGAAACTTAAAACGGCATGAAGGGGGATTATTTTTCACCTGTTTCAAGCTTTTCAAGTTTTTCAAAAAATTTTCACTTCCAAAAAAGTTGAAAAGTTGTCAAACAGCGAAAAGAAGAATGCTGCAAAATTTTAGATATTTTTCGAATTTTCTTAACAAATTGGATATTTTTGGAAAATTCAAAAATTAGTTTTTTTTTTAGTTTTTCAAAAATTCCTTATTTTTTCTGTTTGGGTTTTAAAAACTGGAAATTTTTAATTTTTCCAAGAATTCGAAAACATTTAATTTTCAGCCTAAAATCTGAAATTTTYCACAATTTTTCAGCTTTTCAGATTTTTCCACTTTTTCGAATAAATTCTCAATTTCCATTTTCAACCGCTTTGCAGTTACTGTAGAAGCTAAAAACCCTTCAAAACTACAGTATTCCCATTTTGCGTTAAAGTCAAATTACTGTGTTCCTCGCTAATAGAAGCCCACCCAAACTGGCAAAGTCGAGCTCAATTATCTCGATTCCTGTAAGAGATATCAAAAAGTGGTCAAATGAAAAAATGTTGCTGATTTTATGATAAACATTTGGCCAGTTAACAGATTTTTGTTATCTCTTACAGAAAATGAGATAATTCAGCTCAAATTTTAAAAAAATCCGCGCTTGCAGCAGCGGCTGCGGACATCTGAACTTTGAGGCATTCTATCTCAGTTCCTATCAGAGATATCAAAAAGTAGTAAACTGATGAAATATTTTTGATATTATGATAAACATTTTATCAGTTTACAAATTTTTGCTATCTCTCATAGGAGCCGAGATAATTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAATGCTGCAAAATTTTAGATA</pcr_primer_p1>
		<pcr_primer_p2>TGAAAATGGAAATTGAGAATTTAT</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>AGAATGCTGCAAAATTTTAGATATTTTTCGAATTTTCTTAACAAATTGGATATTTTTGGAAAATTCAAAAATTAGTTTTTTTTTTAGTTTTTCAAAAATTCCTTATTTTTTCTGTTTGGGTTTTAAAAACTGGAAATTTTTAATTTTTCCAAGAATTCGAAAACATTTAATTTTCAGCCTAAAATCTGAAATTTTCCACAATTTTTCAGCTTTTCAGATTTTTCCACTTTTTCGAATAAATTCTCAATTTCCATTTTCA</canonical_amplicon>
		<polymorphic_amplicon>AGAATGCTGCAAAATTTTAGATATTTTTCGAATTTTCTTAACAAATTGGATATTTTTGGAAAATTCAAAAATTAGTTTTTTTTTTAGTTTTTCAAAAATTCCTTATTTTTTCTGTTTGGGTTTTAAAAACTGGAAATTTTTAATTTTTCCAAGAATTCGAAAACATTTAATTTTCAGCCTAAAATCTGAAATTTTYCACAATTTTTCAGCTTTTCAGATTTTTCCACTTTTTCGAATAAATTCTCAATTTCCATTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb836</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1330071</contig_pos>
        <strand>+</strand>
        <context>CTGACAATTT[C/T]CTACAGTATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTAGAACTTTTTGGATGCATAAGTACCTTTTAGAATAATCTGACAATTT</left_flank>
        <right_flank>CTACAGTATTCAAAAGCCAAAAAGTCTGAAAAGCCCGTTACATCGAAGGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTGATATCTTGCATAGGAATCGAGATAAGTTAGTTTGAAGTTAGGGGGCCCTTCTATTACAGGTTTTATGGTAAGTCTGAAATTCGGTTTTTGAAAACTTATAGAACCCATTCGTTATTTAAACTACTTCGTTTTTCCTGTAAAACTTAACATTTTTGAATCCATATTAACCGTAAAACCTGTAAAAGAAGGGCCCCCACACTGTCAAGTTTGAGCTTAATTATCTCGATTCCTGTGAAATATATCAAAAATTTGTCAACAAATAAAATGTTTGTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATATTTTACAGAAACTGAGAAAAATCGGCTCAAAGTTAAAAGTCACGGGGCCCTTCGATTACATGTTCTGCGGTAATTACAACCATTTTTCAATGACTAGATCCTTTTTTTTCCCTGTAAGGCTAAGGCTTTAGAACTTTTTGGATGCATAAGTACCTTTTAGAATAATCTGACAATTTTCTACAGTATTCAAAAGCCAAAAAGTCTGAAAAGCCCGTTACATCGAAGGTCTTAATTCCCAGAGTACTGATTTTAGTCCTGGACCATTTTTAAAAACTCAAAGCAGATGAATGTCTTGGAAACAAGAAAAAACTAATTTTACACAGAAAACTAATGACCCCAATCTGTCAGGCAGGTCAAAAAATGAAAGAGAAAAAAGTAGGAAAAAAAAGAAACAGACACCAACTCTATTCTTTTTCACTATTTTTTTTTCTCTCGTTTTTCAACAGAGTGTAAATGAGAAATGTGTGTGTATGAGAGTGAGCCATCTTCTTCTTTTTTTTCTTCTTTTCCCCCCGGGAGAATTGTTGAAGGGACCCGTTTAAACGCATTGATATCATGCGCACTTCTTCTTCCCCTTTGTCTTTTGCTCTCCCAATTTTTTTGTTGCTTTTTGGTATAAGTAGCAGTTTTCTAAAATTTCCAATTTTTCAGATGTACAATCCAAGTGGATGCACATG</canonical>
            <polymorphic>ATTTTTGATATCTTGCATAGGAATCGAGATAAGTTAGTTTGAAGTTAGGGGGCCCTTCTATTACAGGTTTTATGGTAAGTCTGAAATTCGGTTTTTGAAAACTTATAGAACCCATTCGTTATTTAAACTACTTCGTTTTTCCTGTAAAACTTAACATTTTTGAATCCATATTAACCGTAAAACCTGTAAAAGAAGGGCCCCCACACTGTCAAGTTTGAGCTTAATTATCTCGATTCCTGTGAAATATATCAAAAATTTGTCAACAAATAAAATGTTTGTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATATTTTACAGAAACTGAGAAAAATCGGCTCAAAGTTAAAAGTCACGGGGCCCTTCGATTACATGTTCTGCGGTAATTACAACCATTTTTCAATGACTAGATCCTTTTTTTTCCCTGTAAGGCTAAGGCTTTAGAACTTTTTGGATGCATAAGTACCTTTTAGAATAATCTGACAATTTYCTACAGTATTCAAAAGCCAAAAAGTCTGAAAAGCCCGTTACATCGAAGGTCTTAATTCCCAGAGTACTGATTTTAGTCCTGGACCATTTTTAAAAACTCAAAGCAGATGAATGTCTTGGAAACAAGAAAAAACTAATTTTACACAGAAAACTAATGACCCCAATCTGTCAGGCAGGTCAAAAAATGAAAGAGAAAAAAGTAGGAAAAAAAAGAAACAGACACCAACTCTATTCTTTTTCACTATTTTTTTTTCTCTCGTTTTTCAACAGAGTGTAAATGAGAAATGTGTGTGTATGAGAGTGAGCCATCTTCTTCTTTTTTTTCTTCTTTTCCCCCCGGGAGAATTGTTGAAGGGACCCGTTTAAACGCATTGATATCATGCGCACTTCTTCTTCCCCTTTGTCTTTTGCTCTCCCAATTTTTTTGTTGCTTTTTGGTATAAGTAGCAGTTTTCTAAAATTTCCAATTTTTCAGATGTACAATCCAAGTGGATGCACATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCAATGACTAGATCCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GGGTCATTAGTTTTCTGTGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCAATGACTAGATCCTTTTTTTTCCCTGTAAGGCTAAGGCTTTAGAACTTTTTGGATGCATAAGTACCTTTTAGAATAATCTGACAATTTTCTACAGTATTCAAAAGCCAAAAAGTCTGAAAAGCCCGTTACATCGAAGGTCTTAATTCCCAGAGTACTGATTTTAGTCCTGGACCATTTTTAAAAACTCAAAGCAGATGAATGTCTTGGAAACAAGAAAAAACTAATTTTACACAGAAAACTAATGACCC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCAATGACTAGATCCTTTTTTTTCCCTGTAAGGCTAAGGCTTTAGAACTTTTTGGATGCATAAGTACCTTTTAGAATAATCTGACAATTTYCTACAGTATTCAAAAGCCAAAAAGTCTGAAAAGCCCGTTACATCGAAGGTCTTAATTCCCAGAGTACTGATTTTAGTCCTGGACCATTTTTAAAAACTCAAAGCAGATGAATGTCTTGGAAACAAGAAAAAACTAATTTTACACAGAAAACTAATGACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb837</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1330105</contig_pos>
        <strand>+</strand>
        <context>GTCTGAAAAG[C/T]CCGTTACATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATAATCTGACAATTTTCTACAGTATTCAAAAGCCAAAAAGTCTGAAAAG</left_flank>
        <right_flank>CCGTTACATCGAAGGTCTTAATTCCCAGAGTACTGATTTTAGTCCTGGAC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGTTTGAAGTTAGGGGGCCCTTCTATTACAGGTTTTATGGTAAGTCTGAAATTCGGTTTTTGAAAACTTATAGAACCCATTCGTTATTTAAACTACTTCGTTTTTCCTGTAAAACTTAACATTTTTGAATCCATATTAACCGTAAAACCTGTAAAAGAAGGGCCCCCACACTGTCAAGTTTGAGCTTAATTATCTCGATTCCTGTGAAATATATCAAAAATTTGTCAACAAATAAAATGTTTGTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATATTTTACAGAAACTGAGAAAAATCGGCTCAAAGTTAAAAGTCACGGGGCCCTTCGATTACATGTTCTGCGGTAATTACAACCATTTTTCAATGACTAGATCCTTTTTTTTCCCTGTAAGGCTAAGGCTTTAGAACTTTTTGGATGCATAAGTACCTTTTAGAATAATCTGACAATTTTCTACAGTATTCAAAAGCCAAAAAGTCTGAAAAGCCCGTTACATCGAAGGTCTTAATTCCCAGAGTACTGATTTTAGTCCTGGACCATTTTTAAAAACTCAAAGCAGATGAATGTCTTGGAAACAAGAAAAAACTAATTTTACACAGAAAACTAATGACCCCAATCTGTCAGGCAGGTCAAAAAATGAAAGAGAAAAAAGTAGGAAAAAAAAGAAACAGACACCAACTCTATTCTTTTTCACTATTTTTTTTTCTCTCGTTTTTCAACAGAGTGTAAATGAGAAATGTGTGTGTATGAGAGTGAGCCATCTTCTTCTTTTTTTTCTTCTTTTCCCCCCGGGAGAATTGTTGAAGGGACCCGTTTAAACGCATTGATATCATGCGCACTTCTTCTTCCCCTTTGTCTTTTGCTCTCCCAATTTTTTTGTTGCTTTTTGGTATAAGTAGCAGTTTTCTAAAATTTCCAATTTTTCAGATGTACAATCCAAGTGGATGCACATGGCAACTTCTATCCGTCTCATTACACAGAGTAAGT</canonical>
            <polymorphic>TAGTTTGAAGTTAGGGGGCCCTTCTATTACAGGTTTTATGGTAAGTCTGAAATTCGGTTTTTGAAAACTTATAGAACCCATTCGTTATTTAAACTACTTCGTTTTTCCTGTAAAACTTAACATTTTTGAATCCATATTAACCGTAAAACCTGTAAAAGAAGGGCCCCCACACTGTCAAGTTTGAGCTTAATTATCTCGATTCCTGTGAAATATATCAAAAATTTGTCAACAAATAAAATGTTTGTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATATTTTACAGAAACTGAGAAAAATCGGCTCAAAGTTAAAAGTCACGGGGCCCTTCGATTACATGTTCTGCGGTAATTACAACCATTTTTCAATGACTAGATCCTTTTTTTTCCCTGTAAGGCTAAGGCTTTAGAACTTTTTGGATGCATAAGTACCTTTTAGAATAATCTGACAATTTTCTACAGTATTCAAAAGCCAAAAAGTCTGAAAAGYCCGTTACATCGAAGGTCTTAATTCCCAGAGTACTGATTTTAGTCCTGGACCATTTTTAAAAACTCAAAGCAGATGAATGTCTTGGAAACAAGAAAAAACTAATTTTACACAGAAAACTAATGACCCCAATCTGTCAGGCAGGTCAAAAAATGAAAGAGAAAAAAGTAGGAAAAAAAAGAAACAGACACCAACTCTATTCTTTTTCACTATTTTTTTTTCTCTCGTTTTTCAACAGAGTGTAAATGAGAAATGTGTGTGTATGAGAGTGAGCCATCTTCTTCTTTTTTTTCTTCTTTTCCCCCCGGGAGAATTGTTGAAGGGACCCGTTTAAACGCATTGATATCATGCGCACTTCTTCTTCCCCTTTGTCTTTTGCTCTCCCAATTTTTTTGTTGCTTTTTGGTATAAGTAGCAGTTTTCTAAAATTTCCAATTTTTCAGATGTACAATCCAAGTGGATGCACATGGCAACTTCTATCCGTCTCATTACACAGAGTAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>271 230 145 129 72 68 22 22 18 17 6</canonical_bands>
                <polymorphic_bands>288 230 145 129 72 68 22 22 18 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCAATGACTAGATCCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GGGTCATTAGTTTTCTGTGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCAATGACTAGATCCTTTTTTTTCCCTGTAAGGCTAAGGCTTTAGAACTTTTTGGATGCATAAGTACCTTTTAGAATAATCTGACAATTTTCTACAGTATTCAAAAGCCAAAAAGTCTGAAAAGCCCGTTACATCGAAGGTCTTAATTCCCAGAGTACTGATTTTAGTCCTGGACCATTTTTAAAAACTCAAAGCAGATGAATGTCTTGGAAACAAGAAAAAACTAATTTTACACAGAAAACTAATGACCC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCAATGACTAGATCCTTTTTTTTCCCTGTAAGGCTAAGGCTTTAGAACTTTTTGGATGCATAAGTACCTTTTAGAATAATCTGACAATTTTCTACAGTATTCAAAAGCCAAAAAGTCTGAAAAGYCCGTTACATCGAAGGTCTTAATTCCCAGAGTACTGATTTTAGTCCTGGACCATTTTTAAAAACTCAAAGCAGATGAATGTCTTGGAAACAAGAAAAAACTAATTTTACACAGAAAACTAATGACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb838</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1331703</contig_pos>
        <strand>+</strand>
        <context>GAAGAGCAGC[G/T]CTTTCTGGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAGTTTTCACTTTTCAGTGCTGTCTCATTATTAAGACGAGGAAGAGCAGC</left_flank>
        <right_flank>CTTTCTGGTTCTCTTTCTCTTTTGCTCCATCGAGTTGATTTGATAGTAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTTACTAATTGACAACTTTTTGATATCTTTCAAATAAAGTGAGATATTTAGGCTCAAAGTGGACGGTCCGGGTGGCGTTTTATTAGAGTGTTTACGGTATTCAGGTTCCTGCAAAACCTGTAATAGAAGAGCCCCCCACAGTCACGTTTGAGCTCAGTTATCTCGATTCCTATGCAAGATATCAAAAATGTGTCAACTGAAAGACCATCACTGATTTTGTGATTAACAATTTATCAGTTGATAGCTTATTGATACCTTTTGCAGGGATTGAGATATATGAACTCAAAGCTAAACGTTAGGGAGTCCATCTATTATAGGTTTTACGGCAGGTGTTCTTAAATTTTCTCAAGTAGTTAGTGGACTGTAATTTGTCCCCATGACAAGTTTTTACAATTTCCAAAAATCAGAAAAACCCTTCTGAGTCTCGCGGACCCATCTACTCCTCCTAGTTTTCACTTTTCAGTGCTGTCTCATTATTAAGACGAGGAAGAGCAGCGCTTTCTGGTTCTCTTTCTCTTTTGCTCCATCGAGTTGATTTGATAGTAAGAATGATTCTTTTCTCTGTGGGTACGAGAGAGAAAGAGCCAATGGCCATTTCTCTCTTTCTCTCTCTTTCTCCGAGAACAGCTGTCACCTTCTCGTTCCTCCCGGGAAAGAAGCATCCCGGGAGTAGCCACACCGCTTACTACACAGCATGGCGATGTGCAGAGCATCACTCAGTCATCACAACCACCACCACCTCTCGTTCACACACAACTTCTGCTCTTCCTGCTTCTGTGCTCCTTCTTCTTTCTCAACCATTGATTCATCCGTTTTGATTTACTAGCGGTTCACAGGAAATCGTCTAAGTTTCTCAGTTTCTTCGTTTTGATTTTTTAAAAACATTCCAAAAACTTCAGATCTCGATCTGAATATTTTTGAAAGACATTGTAGGATTTTGGAGGGTCAATTAAAACTTGAATTTTCAGCAAATTTCTTATCCTAGTTAGTTAGTTTC</canonical>
            <polymorphic>CATTTTACTAATTGACAACTTTTTGATATCTTTCAAATAAAGTGAGATATTTAGGCTCAAAGTGGACGGTCCGGGTGGCGTTTTATTAGAGTGTTTACGGTATTCAGGTTCCTGCAAAACCTGTAATAGAAGAGCCCCCCACAGTCACGTTTGAGCTCAGTTATCTCGATTCCTATGCAAGATATCAAAAATGTGTCAACTGAAAGACCATCACTGATTTTGTGATTAACAATTTATCAGTTGATAGCTTATTGATACCTTTTGCAGGGATTGAGATATATGAACTCAAAGCTAAACGTTAGGGAGTCCATCTATTATAGGTTTTACGGCAGGTGTTCTTAAATTTTCTCAAGTAGTTAGTGGACTGTAATTTGTCCCCATGACAAGTTTTTACAATTTCCAAAAATCAGAAAAACCCTTCTGAGTCTCGCGGACCCATCTACTCCTCCTAGTTTTCACTTTTCAGTGCTGTCTCATTATTAAGACGAGGAAGAGCAGCKCTTTCTGGTTCTCTTTCTCTTTTGCTCCATCGAGTTGATTTGATAGTAAGAATGATTCTTTTCTCTGTGGGTACGAGAGAGAAAGAGCCAATGGCCATTTCTCTCTTTCTCTCTCTTTCTCCGAGAACAGCTGTCACCTTCTCGTTCCTCCCGGGAAAGAAGCATCCCGGGAGTAGCCACACCGCTTACTACACAGCATGGCGATGTGCAGAGCATCACTCAGTCATCACAACCACCACCACCTCTCGTTCACACACAACTTCTGCTCTTCCTGCTTCTGTGCTCCTTCTTCTTTCTCAACCATTGATTCATCCGTTTTGATTTACTAGCGGTTCACAGGAAATCGTCTAAGTTTCTCAGTTTCTTCGTTTTGATTTTTTAAAAACATTCCAAAAACTTCAGATCTCGATCTGAATATTTTTGAAAGACATTGTAGGATTTTGGAGGGTCAATTAAAACTTGAATTTTCAGCAAATTTCTTATCCTAGTTAGTTAGTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCGCT</site>
                <isoschizomers>
                    <enzyme>AfeI</enzyme>
                    <enzyme>Aor51HI</enzyme>
                    <enzyme>Eco47III</enzyme>
                    <enzyme>FunI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATGACAAGTTTTTACAATTTC</pcr_primer_p1>
		<pcr_primer_p2>GGAGAAAGAGAGAGAAAGAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CCATGACAAGTTTTTACAATTTCCAAAAATCAGAAAAACCCTTCTGAGTCTCGCGGACCCATCTACTCCTCCTAGTTTTCACTTTTCAGTGCTGTCTCATTATTAAGACGAGGAAGAGCAGCGCTTTCTGGTTCTCTTTCTCTTTTGCTCCATCGAGTTGATTTGATAGTAAGAATGATTCTTTTCTCTGTGGGTACGAGAGAGAAAGAGCCAATGGCCATTTCTCTCTTTCTCTCTCTTTCTCC</canonical_amplicon>
		<polymorphic_amplicon>CCATGACAAGTTTTTACAATTTCCAAAAATCAGAAAAACCCTTCTGAGTCTCGCGGACCCATCTACTCCTCCTAGTTTTCACTTTTCAGTGCTGTCTCATTATTAAGACGAGGAAGAGCAGCKCTTTCTGGTTCTCTTTCTCTTTTGCTCCATCGAGTTGATTTGATAGTAAGAATGATTCTTTTCTCTGTGGGTACGAGAGAGAAAGAGCCAATGGCCATTTCTCTCTTTCTCTCTCTTTCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb839</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1332995</contig_pos>
        <strand>+</strand>
        <context>AAAATTGCTC[A/T]TGTCCACCCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTCAACTTTCTCTAGAAAATTTCTTTCGGTCAAAACGAAAATTGCTC</left_flank>
        <right_flank>TGTCCACCCCCTGGTAATACTAGTATTCTCCCAAAAGAGACAATGTTCTT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTAGAGATGTGAATCAACTAAAGTGTGCAATATACTATTTTTCGATGGTTTCTCAGAGGAGCAATACTATTGGAGGTGGAACTCAATTAGAGATTTAACCCTTGTAGAAACCAAGCCAATTATCATAAATCTTAGAGTTACATTTTCTTTCATATTATGCTTAATCCCATCCTTCTCTAGAAAGTCAAATCTACTCCGATCCTCCTCCTCCTCCCTCATTTCATCCGGAAATTCGAAAACCCTCCACATATCCGGATATGCTCTCTTTCTCTCTCTCCGATTTCCTCCTCTCTCATCAAAATTGGATCATTGCCAACATTTTCCGTTTTTTTTCTTGTGTGTCTGCATTCGTTGATATATAATAAAATTATATCAATACGGACGGGGTGCGCGCACCCAACAATGCATAATATCACAAGCGTTTTTGCCTCCTCACTTTTCCGTTTTTTTTTCAACTTTCTCTAGAAAATTTCTTTCGGTCAAAACGAAAATTGCTCATGTCCACCCCCTGGTAATACTAGTATTCTCCCAAAAGAGACAATGTTCTTCTTGGGATGCCTCCTTTGCAACACACACCACAAATGGATGGCTTATGAAACTATGAGAAAAACGATGAATTGGCTGCTGGGGAATTGGTGTCCAAAAGAGGGAGGAAAAGAGCACAAGTTTTGCATATCACCCTTTTGCCGTTTTTAGGAGCAAAAGAGAGAGAGAAAGAGAGTAGTATGTCCGCCCCGAGGTCTTTGTGTCTCCCTTCAAAACCGGATAGGGGATAGGGGGAAGAAAAGCTAAAGTGTTTTGTTCTGTATATAGAGAACGGCCTTTTTTTTCTAGGATTCTTTTTTGACTCGCAGGTTTCGTACTTTTTTGGATAATCGTATTGAGAAGACATAATTTCAAATTCTGTGTATATTCACTATTTCTTTTCATTCTTGTTATGCTATAAATCTTTAGACATACCTTAAAACCTGTATTAGGCAGGCCCCTCTAATAGAAGA</canonical>
            <polymorphic>ATTTAGAGATGTGAATCAACTAAAGTGTGCAATATACTATTTTTCGATGGTTTCTCAGAGGAGCAATACTATTGGAGGTGGAACTCAATTAGAGATTTAACCCTTGTAGAAACCAAGCCAATTATCATAAATCTTAGAGTTACATTTTCTTTCATATTATGCTTAATCCCATCCTTCTCTAGAAAGTCAAATCTACTCCGATCCTCCTCCTCCTCCCTCATTTCATCCGGAAATTCGAAAACCCTCCACATATCCGGATATGCTCTCTTTCTCTCTCTCCGATTTCCTCCTCTCTCATCAAAATTGGATCATTGCCAACATTTTCCGTTTTTTTTCTTGTGTGTCTGCATTCGTTGATATATAATAAAATTATATCAATACGGACGGGGTGCGCGCACCCAACAATGCATAATATCACAAGCGTTTTTGCCTCCTCACTTTTCCGTTTTTTTTTCAACTTTCTCTAGAAAATTTCTTTCGGTCAAAACGAAAATTGCTCWTGTCCACCCCCTGGTAATACTAGTATTCTCCCAAAAGAGACAATGTTCTTCTTGGGATGCCTCCTTTGCAACACACACCACAAATGGATGGCTTATGAAACTATGAGAAAAACGATGAATTGGCTGCTGGGGAATTGGTGTCCAAAAGAGGGAGGAAAAGAGCACAAGTTTTGCATATCACCCTTTTGCCGTTTTTAGGAGCAAAAGAGAGAGAGAAAGAGAGTAGTATGTCCGCCCCGAGGTCTTTGTGTCTCCCTTCAAAACCGGATAGGGGATAGGGGGAAGAAAAGCTAAAGTGTTTTGTTCTGTATATAGAGAACGGCCTTTTTTTTCTAGGATTCTTTTTTGACTCGCAGGTTTCGTACTTTTTTGGATAATCGTATTGAGAAGACATAATTTCAAATTCTGTGTATATTCACTATTTCTTTTCATTCTTGTTATGCTATAAATCTTTAGACATACCTTAAAACCTGTATTAGGCAGGCCCCTCTAATAGAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTTGCCTCCTCACTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAAACTTGTGCTCTTTTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTTTGCCTCCTCACTTTTCCGTTTTTTTTTCAACTTTCTCTAGAAAATTTCTTTCGGTCAAAACGAAAATTGCTCATGTCCACCCCCTGGTAATACTAGTATTCTCCCAAAAGAGACAATGTTCTTCTTGGGATGCCTCCTTTGCAACACACACCACAAATGGATGGCTTATGAAACTATGAGAAAAACGATGAATTGGCTGCTGGGGAATTGGTGTCCAAAAGAGGGAGGAAAAGAGCACAAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTTGCCTCCTCACTTTTCCGTTTTTTTTTCAACTTTCTCTAGAAAATTTCTTTCGGTCAAAACGAAAATTGCTCWTGTCCACCCCCTGGTAATACTAGTATTCTCCCAAAAGAGACAATGTTCTTCTTGGGATGCCTCCTTTGCAACACACACCACAAATGGATGGCTTATGAAACTATGAGAAAAACGATGAATTGGCTGCTGGGGAATTGGTGTCCAAAAGAGGGAGGAAAAGAGCACAAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb840</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1332961</contig_pos>
        <strand></strand>
        <context>AACTTTCTCT[A/C]GAAAATTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CACAAGCGTTTTTGCCTCCTCACTTTTCCGTTTTTTTTTCAACTTTCTCT</left_flank>
        <right_flank>GAAAATTTCTTTCGGTCAAAACGAAAATTGCTCATGTCCACCCCCTGGTA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGATGTATCTTTAAAGAAATGAAGAGCACTATATTTAGAGATGTGAATCAACTAAAGTGTGCAATATACTATTTTTCGATGGTTTCTCAGAGGAGCAATACTATTGGAGGTGGAACTCAATTAGAGATTTAACCCTTGTAGAAACCAAGCCAATTATCATAAATCTTAGAGTTACATTTTCTTTCATATTATGCTTAATCCCATCCTTCTCTAGAAAGTCAAATCTACTCCGATCCTCCTCCTCCTCCCTCATTTCATCCGGAAATTCGAAAACCCTCCACATATCCGGATATGCTCTCTTTCTCTCTCTCCGATTTCCTCCTCTCTCATCAAAATTGGATCATTGCCAACATTTTCCGTTTTTTTTCTTGTGTGTCTGCATTCGTTGATATATAATAAAATTATATCAATACGGACGGGGTGCGCGCACCCAACAATGCATAATATCACAAGCGTTTTTGCCTCCTCACTTTTCCGTTTTTTTTTCAACTTTCTCTAGAAAATTTCTTTCGGTCAAAACGAAAATTGCTCATGTCCACCCCCTGGTAATACTAGTATTCTCCCAAAAGAGACAATGTTCTTCTTGGGATGCCTCCTTTGCAACACACACCACAAATGGATGGCTTATGAAACTATGAGAAAAACGATGAATTGGCTGCTGGGGAATTGGTGTCCAAAAGAGGGAGGAAAAGAGCACAAGTTTTGCATATCACCCTTTTGCCGTTTTTAGGAGCAAAAGAGAGAGAGAAAGAGAGTAGTATGTCCGCCCCGAGGTCTTTGTGTCTCCCTTCAAAACCGGATAGGGGATAGGGGGAAGAAAAGCTAAAGTGTTTTGTTCTGTATATAGAGAACGGCCTTTTTTTTCTAGGATTCTTTTTTGACTCGCAGGTTTCGTACTTTTTTGGATAATCGTATTGAGAAGACATAATTTCAAATTCTGTGTATATTCACTATTTCTTTTCATTCTTGTTATGCTATAAATCTTTAGACATACCTTA</canonical>
            <polymorphic>TTTGATGTATCTTTAAAGAAATGAAGAGCACTATATTTAGAGATGTGAATCAACTAAAGTGTGCAATATACTATTTTTCGATGGTTTCTCAGAGGAGCAATACTATTGGAGGTGGAACTCAATTAGAGATTTAACCCTTGTAGAAACCAAGCCAATTATCATAAATCTTAGAGTTACATTTTCTTTCATATTATGCTTAATCCCATCCTTCTCTAGAAAGTCAAATCTACTCCGATCCTCCTCCTCCTCCCTCATTTCATCCGGAAATTCGAAAACCCTCCACATATCCGGATATGCTCTCTTTCTCTCTCTCCGATTTCCTCCTCTCTCATCAAAATTGGATCATTGCCAACATTTTCCGTTTTTTTTCTTGTGTGTCTGCATTCGTTGATATATAATAAAATTATATCAATACGGACGGGGTGCGCGCACCCAACAATGCATAATATCACAAGCGTTTTTGCCTCCTCACTTTTCCGTTTTTTTTTCAACTTTCTCTMGAAAATTTCTTTCGGTCAAAACGAAAATTGCTCATGTCCACCCCCTGGTAATACTAGTATTCTCCCAAAAGAGACAATGTTCTTCTTGGGATGCCTCCTTTGCAACACACACCACAAATGGATGGCTTATGAAACTATGAGAAAAACGATGAATTGGCTGCTGGGGAATTGGTGTCCAAAAGAGGGAGGAAAAGAGCACAAGTTTTGCATATCACCCTTTTGCCGTTTTTAGGAGCAAAAGAGAGAGAGAAAGAGAGTAGTATGTCCGCCCCGAGGTCTTTGTGTCTCCCTTCAAAACCGGATAGGGGATAGGGGGAAGAAAAGCTAAAGTGTTTTGTTCTGTATATAGAGAACGGCCTTTTTTTTCTAGGATTCTTTTTTGACTCGCAGGTTTCGTACTTTTTTGGATAATCGTATTGAGAAGACATAATTTCAAATTCTGTGTATATTCACTATTTCTTTTCATTCTTGTTATGCTATAAATCTTTAGACATACCTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>313 285 213 133 56</canonical_bands>
                <polymorphic_bands>341 313 213 133</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>503 285 212</canonical_bands>
                <polymorphic_bands>788 212</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCATCAAAATTGGATCATTG</pcr_primer_p1>
		<pcr_primer_p2>TTGTCTCTTTTGGGAGAATACTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCATCAAAATTGGATCATTGCCAACATTTTCCGTTTTTTTTCTTGTGTGTCTGCATTCGTTGATATATAATAAAATTATATCAATACGGACGGGGTGCGCGCACCCAACAATGCATAATATCACAAGCGTTTTTGCCTCCTCACTTTTCCGTTTTTTTTTCAACTTTCTCTAGAAAATTTCTTTCGGTCAAAACGAAAATTGCTCATGTCCACCCCCTGGTAATACTAGTATTCTCCCAAAAGAGACAA</canonical_amplicon>
		<polymorphic_amplicon>CTCATCAAAATTGGATCATTGCCAACATTTTCCGTTTTTTTTCTTGTGTGTCTGCATTCGTTGATATATAATAAAATTATATCAATACGGACGGGGTGCGCGCACCCAACAATGCATAATATCACAAGCGTTTTTGCCTCCTCACTTTTCCGTTTTTTTTTCAACTTTCTCTMGAAAATTTCTTTCGGTCAAAACGAAAATTGCTCATGTCCACCCCCTGGTAATACTAGTATTCTCCCAAAAGAGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb841</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1334639</contig_pos>
        <strand>+</strand>
        <context>AGAAGGATCC[A/G]GGGTTGAAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTTTATATAAAAGAAATCAGAAATCCGAAATTAGCCGAGAAGGATCC</left_flank>
        <right_flank>GGGTTGAAGGAAGGAGATTCGGTGTTGAGGATCAATGGACAAAGTCTAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATTTCGAATCTTTCATTCTTTCCTAGAACCTTCTCCTTTAACCGATTAAGAATTGTTTTTCAGGCTGCCAATCTCGGGTTCGGCATAGCGATATCCGGTGGTCGCGACAATCCACACTTCACTTCTGGAGACCCTGTCGTTGTCATTTCGGACGTCGTGCCAAACGGACCAGCTTGGGGACTTCTTCAGTGAGTTTCCGTTCCTTTTGAACTTATCAATTCAGCTTCTTTTTTCAGAGTAAATGATAGGATTCTATCGGCAAACAACGTGTCGTTCGAAAACATTGACTATAGCAGTGCAGTCGACATAATCAAGAATAAGGATCACATTGATATGATAGTGAAGCGACGAGTAGCAGTTCCAATGTTAGAATACGAGCAGAGAACACTAAAGTTTACACTATCAAAGTCTCGGAAAAAGGATGATTTTGGAATCGTTGTTGGATGTAAATTTTATATAAAAGAAATCAGAAATCCGAAATTAGCCGAGAAGGATCCAGGGTTGAAGGAAGGAGATTCGGTGTTGAGGATCAATGGACAAAGTCTAGATGGAGCATCGTTGGAAGAAGTGAATAAATGGTTAGAGAGATCTAGAGACAAATTATGTCTTGTGATACAAAGGGATGTGCGGAGGGGTACTTCCCGGTGGCCATCCCAGAATACTGTTTATGAGAGAGTGGGGAGTGTTGGAGCGACGCCAAGGCATTCACCAAGTCCAATGCTACCGCATATGCCGATTGCTCAGAGGAACTCCCACGAGTATGTGAATTCTCCACGTCATCGATCCGACGGAAGTGTGGAGCGACGCGTCTCGTCTCCAGCAAATTCGCAACTCTCCAACTTCAATGGAATGGCATCTTCGCAAATCACAACGCAAGAATACGACTGCTACACACGTCAACCATCCAGGTCAATAGATGCGAATGGAGTTGCAAATGTCATGTTCCGGAAGGTGGAAAACTATATAGAAATTGAAAAGATAATTAAAGGGTTTATCGT</canonical>
            <polymorphic>TCATTTCGAATCTTTCATTCTTTCCTAGAACCTTCTCCTTTAACCGATTAAGAATTGTTTTTCAGGCTGCCAATCTCGGGTTCGGCATAGCGATATCCGGTGGTCGCGACAATCCACACTTCACTTCTGGAGACCCTGTCGTTGTCATTTCGGACGTCGTGCCAAACGGACCAGCTTGGGGACTTCTTCAGTGAGTTTCCGTTCCTTTTGAACTTATCAATTCAGCTTCTTTTTTCAGAGTAAATGATAGGATTCTATCGGCAAACAACGTGTCGTTCGAAAACATTGACTATAGCAGTGCAGTCGACATAATCAAGAATAAGGATCACATTGATATGATAGTGAAGCGACGAGTAGCAGTTCCAATGTTAGAATACGAGCAGAGAACACTAAAGTTTACACTATCAAAGTCTCGGAAAAAGGATGATTTTGGAATCGTTGTTGGATGTAAATTTTATATAAAAGAAATCAGAAATCCGAAATTAGCCGAGAAGGATCCRGGGTTGAAGGAAGGAGATTCGGTGTTGAGGATCAATGGACAAAGTCTAGATGGAGCATCGTTGGAAGAAGTGAATAAATGGTTAGAGAGATCTAGAGACAAATTATGTCTTGTGATACAAAGGGATGTGCGGAGGGGTACTTCCCGGTGGCCATCCCAGAATACTGTTTATGAGAGAGTGGGGAGTGTTGGAGCGACGCCAAGGCATTCACCAAGTCCAATGCTACCGCATATGCCGATTGCTCAGAGGAACTCCCACGAGTATGTGAATTCTCCACGTCATCGATCCGACGGAAGTGTGGAGCGACGCGTCTCGTCTCCAGCAAATTCGCAACTCTCCAACTTCAATGGAATGGCATCTTCGCAAATCACAACGCAAGAATACGACTGCTACACACGTCAACCATCCAGGTCAATAGATGCGAATGGAGTTGCAAATGTCATGTTCCGGAAGGTGGAAAACTATATAGAAATTGAAAAGATAATTAAAGGGTTTATCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>499 409 92</canonical_bands>
                <polymorphic_bands>908 92</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGCAGAGAACACTAAAGTTTACA</pcr_primer_p1>
		<pcr_primer_p2>ATCCCTTTGTATCACAAGACATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAGCAGAGAACACTAAAGTTTACACTATCAAAGTCTCGGAAAAAGGATGATTTTGGAATCGTTGTTGGATGTAAATTTTATATAAAAGAAATCAGAAATCCGAAATTAGCCGAGAAGGATCCAGGGTTGAAGGAAGGAGATTCGGTGTTGAGGATCAATGGACAAAGTCTAGATGGAGCATCGTTGGAAGAAGTGAATAAATGGTTAGAGAGATCTAGAGACAAATTATGTCTTGTGATACAAAGGGAT</canonical_amplicon>
		<polymorphic_amplicon>GAGCAGAGAACACTAAAGTTTACACTATCAAAGTCTCGGAAAAAGGATGATTTTGGAATCGTTGTTGGATGTAAATTTTATATAAAAGAAATCAGAAATCCGAAATTAGCCGAGAAGGATCCRGGGTTGAAGGAAGGAGATTCGGTGTTGAGGATCAATGGACAAAGTCTAGATGGAGCATCGTTGGAAGAAGTGAATAAATGGTTAGAGAGATCTAGAGACAAATTATGTCTTGTGATACAAAGGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb842</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1385528</contig_pos>
        <strand>+</strand>
        <context>TGTGTTAATG[A/G]TGAAAGGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTTAAAGAGCAAATCTAGGGAGGCTATCTATTGAAGTGTGTGTTAATG</left_flank>
        <right_flank>TGAAAGGAATGACATTTCTGACTTCTAAAAATTCAACTTACACAAATTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGTCGCCTGTCTCACTAGACTTCCTTTATGAAGAATTTCTCGTTTCGCCTGTTCCAACTCATCAAACCACAGTGTTCGGATTCTGGCGCTTTCACAGAGATAGCATCGGGATTCGGGGAAAATGAGAAGTTTCAGCACTTTTCCAGCGTTCGCTGCTCCGGACTCTCGATCTTTGACGTTCACAGGAGCCACAGAGTTCAAGGAGAGTGTGGATTCCATACTGAAGATTTACAAAATTGTTAAATGGTTTTCTTTGTCTGATATCTTTCATAAAAGGAATTACCGTAAAACCTTTAGTAGAAACCCCCACCCACTCTGTCAATTTTGAGCTCCACTATCTCGGTTCCTATGCAAGATATCAAAAATGTGTCAGCTGATAAAACGTTGATGATTTCATGATACACAATTTATAAGTTAGCAGGATTTAGTTATCTCTTTTAGAAATTGAGTTTAAAGAGCAAATCTAGGGAGGCTATCTATTGAAGTGTGTGTTAATGATGAAAGGAATGACATTTCTGACTTCTAAAAATTCAACTTACACAAATTTTCCTGCTGCATTTATATTTCCAATGATCAGTCTATGCGACAACAGTATCAGCATACACTTTTGCACTGGTTTCTTCGTCTCCACATCGAATTGCTCCATTTCCCCATGCAGAATCACTTTCTCCGACGTCGACATGTTATTCAGAATGCCCCCAATTCCTTCCATTTTTTGCATCAAAATCTGAATTGGATTCGTGTTGGAAGTCGTTGTAGAATGAGAGGAGACAGTGTGAATCGAGTTTTTATCATCGTCAGTCATCAGTAGAAGATTCTCGATCACCTGCTTTTGCTCTATTAGGGAATGTGTCAGCTGGTAGATTTCTCGCTCCAAATCTTACAAATTTAGGTTGAAAATTAGAAAAATTCGAAGAACTAACGAGAAATTTCTTTGGAGGCATCTATAAATTGCTGATAATTCCGGAATACATTATTTTTCAGAGTCTCCTGCGACG</canonical>
            <polymorphic>ATCGTCGCCTGTCTCACTAGACTTCCTTTATGAAGAATTTCTCGTTTCGCCTGTTCCAACTCATCAAACCACAGTGTTCGGATTCTGGCGCTTTCACAGAGATAGCATCGGGATTCGGGGAAAATGAGAAGTTTCAGCACTTTTCCAGCGTTCGCTGCTCCGGACTCTCGATCTTTGACGTTCACAGGAGCCACAGAGTTCAAGGAGAGTGTGGATTCCATACTGAAGATTTACAAAATTGTTAAATGGTTTTCTTTGTCTGATATCTTTCATAAAAGGAATTACCGTAAAACCTTTAGTAGAAACCCCCACCCACTCTGTCAATTTTGAGCTCCACTATCTCGGTTCCTATGCAAGATATCAAAAATGTGTCAGCTGATAAAACGTTGATGATTTCATGATACACAATTTATAAGTTAGCAGGATTTAGTTATCTCTTTTAGAAATTGAGTTTAAAGAGCAAATCTAGGGAGGCTATCTATTGAAGTGTGTGTTAATGRTGAAAGGAATGACATTTCTGACTTCTAAAAATTCAACTTACACAAATTTTCCTGCTGCATTTATATTTCCAATGATCAGTCTATGCGACAACAGTATCAGCATACACTTTTGCACTGGTTTCTTCGTCTCCACATCGAATTGCTCCATTTCCCCATGCAGAATCACTTTCTCCGACGTCGACATGTTATTCAGAATGCCCCCAATTCCTTCCATTTTTTGCATCAAAATCTGAATTGGATTCGTGTTGGAAGTCGTTGTAGAATGAGAGGAGACAGTGTGAATCGAGTTTTTATCATCGTCAGTCATCAGTAGAAGATTCTCGATCACCTGCTTTTGCTCTATTAGGGAATGTGTCAGCTGGTAGATTTCTCGCTCCAAATCTTACAAATTTAGGTTGAAAATTAGAAAAATTCGAAGAACTAACGAGAAATTTCTTTGGAGGCATCTATAAATTGCTGATAATTCCGGAATACATTATTTTTCAGAGTCTCCTGCGACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTTTTCTTTGTCTGATATCTT</pcr_primer_p1>
		<pcr_primer_p2>CAGGAAAATTTGTGTAAGTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>308</pcr_amplicon_size>
		<canonical_amplicon>TGGTTTTCTTTGTCTGATATCTTTCATAAAAGGAATTACCGTAAAACCTTTAGTAGAAACCCCCACCCACTCTGTCAATTTTGAGCTCCACTATCTCGGTTCCTATGCAAGATATCAAAAATGTGTCAGCTGATAAAACGTTGATGATTTCATGATACACAATTTATAAGTTAGCAGGATTTAGTTATCTCTTTTAGAAATTGAGTTTAAAGAGCAAATCTAGGGAGGCTATCTATTGAAGTGTGTGTTAATGATGAAAGGAATGACATTTCTGACTTCTAAAAATTCAACTTACACAAATTTTCCTG</canonical_amplicon>
		<polymorphic_amplicon>TGGTTTTCTTTGTCTGATATCTTTCATAAAAGGAATTACCGTAAAACCTTTAGTAGAAACCCCCACCCACTCTGTCAATTTTGAGCTCCACTATCTCGGTTCCTATGCAAGATATCAAAAATGTGTCAGCTGATAAAACGTTGATGATTTCATGATACACAATTTATAAGTTAGCAGGATTTAGTTATCTCTTTTAGAAATTGAGTTTAAAGAGCAAATCTAGGGAGGCTATCTATTGAAGTGTGTGTTAATGRTGAAAGGAATGACATTTCTGACTTCTAAAAATTCAACTTACACAAATTTTCCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb843</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1385540</contig_pos>
        <strand>+</strand>
        <context>GAAAGGAATG[A/G]CATTTCTGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATCTAGGGAGGCTATCTATTGAAGTGTGTGTTAATGATGAAAGGAATG</left_flank>
        <right_flank>CATTTCTGACTTCTAAAAATTCAACTTACACAAATTTTCCTGCTGCATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCACTAGACTTCCTTTATGAAGAATTTCTCGTTTCGCCTGTTCCAACTCATCAAACCACAGTGTTCGGATTCTGGCGCTTTCACAGAGATAGCATCGGGATTCGGGGAAAATGAGAAGTTTCAGCACTTTTCCAGCGTTCGCTGCTCCGGACTCTCGATCTTTGACGTTCACAGGAGCCACAGAGTTCAAGGAGAGTGTGGATTCCATACTGAAGATTTACAAAATTGTTAAATGGTTTTCTTTGTCTGATATCTTTCATAAAAGGAATTACCGTAAAACCTTTAGTAGAAACCCCCACCCACTCTGTCAATTTTGAGCTCCACTATCTCGGTTCCTATGCAAGATATCAAAAATGTGTCAGCTGATAAAACGTTGATGATTTCATGATACACAATTTATAAGTTAGCAGGATTTAGTTATCTCTTTTAGAAATTGAGTTTAAAGAGCAAATCTAGGGAGGCTATCTATTGAAGTGTGTGTTAATGATGAAAGGAATGACATTTCTGACTTCTAAAAATTCAACTTACACAAATTTTCCTGCTGCATTTATATTTCCAATGATCAGTCTATGCGACAACAGTATCAGCATACACTTTTGCACTGGTTTCTTCGTCTCCACATCGAATTGCTCCATTTCCCCATGCAGAATCACTTTCTCCGACGTCGACATGTTATTCAGAATGCCCCCAATTCCTTCCATTTTTTGCATCAAAATCTGAATTGGATTCGTGTTGGAAGTCGTTGTAGAATGAGAGGAGACAGTGTGAATCGAGTTTTTATCATCGTCAGTCATCAGTAGAAGATTCTCGATCACCTGCTTTTGCTCTATTAGGGAATGTGTCAGCTGGTAGATTTCTCGCTCCAAATCTTACAAATTTAGGTTGAAAATTAGAAAAATTCGAAGAACTAACGAGAAATTTCTTTGGAGGCATCTATAAATTGCTGATAATTCCGGAATACATTATTTTTCAGAGTCTCCTGCGACGCATGATTCAGCG</canonical>
            <polymorphic>CTCACTAGACTTCCTTTATGAAGAATTTCTCGTTTCGCCTGTTCCAACTCATCAAACCACAGTGTTCGGATTCTGGCGCTTTCACAGAGATAGCATCGGGATTCGGGGAAAATGAGAAGTTTCAGCACTTTTCCAGCGTTCGCTGCTCCGGACTCTCGATCTTTGACGTTCACAGGAGCCACAGAGTTCAAGGAGAGTGTGGATTCCATACTGAAGATTTACAAAATTGTTAAATGGTTTTCTTTGTCTGATATCTTTCATAAAAGGAATTACCGTAAAACCTTTAGTAGAAACCCCCACCCACTCTGTCAATTTTGAGCTCCACTATCTCGGTTCCTATGCAAGATATCAAAAATGTGTCAGCTGATAAAACGTTGATGATTTCATGATACACAATTTATAAGTTAGCAGGATTTAGTTATCTCTTTTAGAAATTGAGTTTAAAGAGCAAATCTAGGGAGGCTATCTATTGAAGTGTGTGTTAATGATGAAAGGAATGRCATTTCTGACTTCTAAAAATTCAACTTACACAAATTTTCCTGCTGCATTTATATTTCCAATGATCAGTCTATGCGACAACAGTATCAGCATACACTTTTGCACTGGTTTCTTCGTCTCCACATCGAATTGCTCCATTTCCCCATGCAGAATCACTTTCTCCGACGTCGACATGTTATTCAGAATGCCCCCAATTCCTTCCATTTTTTGCATCAAAATCTGAATTGGATTCGTGTTGGAAGTCGTTGTAGAATGAGAGGAGACAGTGTGAATCGAGTTTTTATCATCGTCAGTCATCAGTAGAAGATTCTCGATCACCTGCTTTTGCTCTATTAGGGAATGTGTCAGCTGGTAGATTTCTCGCTCCAAATCTTACAAATTTAGGTTGAAAATTAGAAAAATTCGAAGAACTAACGAGAAATTTCTTTGGAGGCATCTATAAATTGCTGATAATTCCGGAATACATTATTTTTCAGAGTCTCCTGCGACGCATGATTCAGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCAAATCTAGGGAGGCTAT</pcr_primer_p1>
		<pcr_primer_p2>AGAAACCAGTGCAAAAGTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>165</pcr_amplicon_size>
		<canonical_amplicon>AGCAAATCTAGGGAGGCTATCTATTGAAGTGTGTGTTAATGATGAAAGGAATGACATTTCTGACTTCTAAAAATTCAACTTACACAAATTTTCCTGCTGCATTTATATTTCCAATGATCAGTCTATGCGACAACAGTATCAGCATACACTTTTGCACTGGTTTCT</canonical_amplicon>
		<polymorphic_amplicon>AGCAAATCTAGGGAGGCTATCTATTGAAGTGTGTGTTAATGATGAAAGGAATGRCATTTCTGACTTCTAAAAATTCAACTTACACAAATTTTCCTGCTGCATTTATATTTCCAATGATCAGTCTATGCGACAACAGTATCAGCATACACTTTTGCACTGGTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb844</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1388649</contig_pos>
        <strand>+</strand>
        <context>GATGAACATT[A/T]TAAATCTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTTCATCCAATTCTTCTTCTATTATATTCCAAGCTTCGATGAACATT</left_flank>
        <right_flank>TAAATCTTGAATTTTTGTTTTTCCGTTTAATATTCCGGTTTGAATCCGAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAAGGGAAACAAGGTTTTTTAGCTTAGGCCTATAATTTTCAACAAATAAAGGGGAAATTTTGAAAAAAATCCCATAATTAAAGCTAGCATTCTCTTCTAACCCATAATTAACTTCCAGAGCCGGCCTGTATCTCCTGGAGCACCTGCCAGACGTGCAACTCGATTTGAAAACTCAAAAACTCTCCTACGATCTCACCAAGGGAAGCGCCGATGACTTGATGGAAATTGCGAGGATTCTCAGGAAGAGCAAATAATTAGATTTTTCTATAATTAGCTTCTTTTGTTTAATTTGACTCAAAACTTTTTTGCAAAAATCATAATAATCTCCAAATGATCTCTGTCAAATTTTTGCTTTCTCGTCTCGACTGGGCGGTAATCTACAGTTTCTGCATTTTTGCGTCGCCGTGTTTGCACACAAAATTATTCTCGATTCGTTTTTGAATTTTTAAATTTTCATCCAATTCTTCTTCTATTATATTCCAAGCTTCGATGAACATTATAAATCTTGAATTTTTGTTTTTCCGTTTAATATTCCGGTTTGAATCCGAAGTTTTATTTTGCAGTACAAAGATTTGTATCGCCAAAATTTCTATAATGATATTGAAGATATCGATATTTTCACTGTTCGTATAGCTTTTCCTCCCAATTTTCTCGCAATTAAACATATATTCACCTAGTGAAATGGTGGTCTTGGCACGACGGAGTGGGGGGAAGGCCAGAGACGCAGACCGCACGAAAATCGATACTTGATGCTGCATCGCTTCGCCAGAACTAGCGAACACTTGTTTTCATAATTCAGCTTTCTTTTTTCTTTTATATCAGTCTATTTTTGATAACTAAGCCCTTTTTGAAGAAAGTTGGATCAAAAATAATAGTTATCCTTCGAAATTTCCAGCAAATTAAATCAAATGTCTGATCGAAGTGGGAGATCAGACCACAACTACCATTCGAAGCCCTCCTGTTCCAGCGGACGACGTCAATCAGCTTCCCTACACGGTA</canonical>
            <polymorphic>GGAAGGGAAACAAGGTTTTTTAGCTTAGGCCTATAATTTTCAACAAATAAAGGGGAAATTTTGAAAAAAATCCCATAATTAAAGCTAGCATTCTCTTCTAACCCATAATTAACTTCCAGAGCCGGCCTGTATCTCCTGGAGCACCTGCCAGACGTGCAACTCGATTTGAAAACTCAAAAACTCTCCTACGATCTCACCAAGGGAAGCGCCGATGACTTGATGGAAATTGCGAGGATTCTCAGGAAGAGCAAATAATTAGATTTTTCTATAATTAGCTTCTTTTGTTTAATTTGACTCAAAACTTTTTTGCAAAAATCATAATAATCTCCAAATGATCTCTGTCAAATTTTTGCTTTCTCGTCTCGACTGGGCGGTAATCTACAGTTTCTGCATTTTTGCGTCGCCGTGTTTGCACACAAAATTATTCTCGATTCGTTTTTGAATTTTTAAATTTTCATCCAATTCTTCTTCTATTATATTCCAAGCTTCGATGAACATTWTAAATCTTGAATTTTTGTTTTTCCGTTTAATATTCCGGTTTGAATCCGAAGTTTTATTTTGCAGTACAAAGATTTGTATCGCCAAAATTTCTATAATGATATTGAAGATATCGATATTTTCACTGTTCGTATAGCTTTTCCTCCCAATTTTCTCGCAATTAAACATATATTCACCTAGTGAAATGGTGGTCTTGGCACGACGGAGTGGGGGGAAGGCCAGAGACGCAGACCGCACGAAAATCGATACTTGATGCTGCATCGCTTCGCCAGAACTAGCGAACACTTGTTTTCATAATTCAGCTTTCTTTTTTCTTTTATATCAGTCTATTTTTGATAACTAAGCCCTTTTTGAAGAAAGTTGGATCAAAAATAATAGTTATCCTTCGAAATTTCCAGCAAATTAAATCAAATGTCTGATCGAAGTGGGAGATCAGACCACAACTACCATTCGAAGCCCTCCTGTTCCAGCGGACGACGTCAATCAGCTTCCCTACACGGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGCAAAAATCATAATAATCTCC</pcr_primer_p1>
		<pcr_primer_p2>AAAATAAAACTTCGGATTCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTGCAAAAATCATAATAATCTCCAAATGATCTCTGTCAAATTTTTGCTTTCTCGTCTCGACTGGGCGGTAATCTACAGTTTCTGCATTTTTGCGTCGCCGTGTTTGCACACAAAATTATTCTCGATTCGTTTTTGAATTTTTAAATTTTCATCCAATTCTTCTTCTATTATATTCCAAGCTTCGATGAACATTATAAATCTTGAATTTTTGTTTTTCCGTTTAATATTCCGGTTTGAATCCGAAGTTTTATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGCAAAAATCATAATAATCTCCAAATGATCTCTGTCAAATTTTTGCTTTCTCGTCTCGACTGGGCGGTAATCTACAGTTTCTGCATTTTTGCGTCGCCGTGTTTGCACACAAAATTATTCTCGATTCGTTTTTGAATTTTTAAATTTTCATCCAATTCTTCTTCTATTATATTCCAAGCTTCGATGAACATTWTAAATCTTGAATTTTTGTTTTTCCGTTTAATATTCCGGTTTGAATCCGAAGTTTTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb845</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1388635</contig_pos>
        <strand>+</strand>
        <context>ATATTCCAAG[A/C]TTCGATGAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTTGAATTTTTAAATTTTCATCCAATTCTTCTTCTATTATATTCCAAG</left_flank>
        <right_flank>TTCGATGAACATTATAAATCTTGAATTTTTGTTTTTCCGTTTAATATTCC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGCGGCATTTTTCGGAAGGGAAACAAGGTTTTTTAGCTTAGGCCTATAATTTTCAACAAATAAAGGGGAAATTTTGAAAAAAATCCCATAATTAAAGCTAGCATTCTCTTCTAACCCATAATTAACTTCCAGAGCCGGCCTGTATCTCCTGGAGCACCTGCCAGACGTGCAACTCGATTTGAAAACTCAAAAACTCTCCTACGATCTCACCAAGGGAAGCGCCGATGACTTGATGGAAATTGCGAGGATTCTCAGGAAGAGCAAATAATTAGATTTTTCTATAATTAGCTTCTTTTGTTTAATTTGACTCAAAACTTTTTTGCAAAAATCATAATAATCTCCAAATGATCTCTGTCAAATTTTTGCTTTCTCGTCTCGACTGGGCGGTAATCTACAGTTTCTGCATTTTTGCGTCGCCGTGTTTGCACACAAAATTATTCTCGATTCGTTTTTGAATTTTTAAATTTTCATCCAATTCTTCTTCTATTATATTCCAAGCTTCGATGAACATTATAAATCTTGAATTTTTGTTTTTCCGTTTAATATTCCGGTTTGAATCCGAAGTTTTATTTTGCAGTACAAAGATTTGTATCGCCAAAATTTCTATAATGATATTGAAGATATCGATATTTTCACTGTTCGTATAGCTTTTCCTCCCAATTTTCTCGCAATTAAACATATATTCACCTAGTGAAATGGTGGTCTTGGCACGACGGAGTGGGGGGAAGGCCAGAGACGCAGACCGCACGAAAATCGATACTTGATGCTGCATCGCTTCGCCAGAACTAGCGAACACTTGTTTTCATAATTCAGCTTTCTTTTTTCTTTTATATCAGTCTATTTTTGATAACTAAGCCCTTTTTGAAGAAAGTTGGATCAAAAATAATAGTTATCCTTCGAAATTTCCAGCAAATTAAATCAAATGTCTGATCGAAGTGGGAGATCAGACCACAACTACCATTCGAAGCCCTCCTGTTCCAGCGGACGACGTCAATCAGC</canonical>
            <polymorphic>TGGCGGCATTTTTCGGAAGGGAAACAAGGTTTTTTAGCTTAGGCCTATAATTTTCAACAAATAAAGGGGAAATTTTGAAAAAAATCCCATAATTAAAGCTAGCATTCTCTTCTAACCCATAATTAACTTCCAGAGCCGGCCTGTATCTCCTGGAGCACCTGCCAGACGTGCAACTCGATTTGAAAACTCAAAAACTCTCCTACGATCTCACCAAGGGAAGCGCCGATGACTTGATGGAAATTGCGAGGATTCTCAGGAAGAGCAAATAATTAGATTTTTCTATAATTAGCTTCTTTTGTTTAATTTGACTCAAAACTTTTTTGCAAAAATCATAATAATCTCCAAATGATCTCTGTCAAATTTTTGCTTTCTCGTCTCGACTGGGCGGTAATCTACAGTTTCTGCATTTTTGCGTCGCCGTGTTTGCACACAAAATTATTCTCGATTCGTTTTTGAATTTTTAAATTTTCATCCAATTCTTCTTCTATTATATTCCAAGMTTCGATGAACATTATAAATCTTGAATTTTTGTTTTTCCGTTTAATATTCCGGTTTGAATCCGAAGTTTTATTTTGCAGTACAAAGATTTGTATCGCCAAAATTTCTATAATGATATTGAAGATATCGATATTTTCACTGTTCGTATAGCTTTTCCTCCCAATTTTCTCGCAATTAAACATATATTCACCTAGTGAAATGGTGGTCTTGGCACGACGGAGTGGGGGGAAGGCCAGAGACGCAGACCGCACGAAAATCGATACTTGATGCTGCATCGCTTCGCCAGAACTAGCGAACACTTGTTTTCATAATTCAGCTTTCTTTTTTCTTTTATATCAGTCTATTTTTGATAACTAAGCCCTTTTTGAAGAAAGTTGGATCAAAAATAATAGTTATCCTTCGAAATTTCCAGCAAATTAAATCAAATGTCTGATCGAAGTGGGAGATCAGACCACAACTACCATTCGAAGCCCTCCTGTTCCAGCGGACGACGTCAATCAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>210 191 186 166 149 61 37</canonical_bands>
                <polymorphic_bands>359 191 186 166 61 37</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>210 150 149 112 84 82 55 42 37 37 32 6 4</canonical_bands>
                <polymorphic_bands>359 150 112 84 82 55 42 37 37 32 6 4</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGCAAAAATCATAATAATCTCC</pcr_primer_p1>
		<pcr_primer_p2>AAAATAAAACTTCGGATTCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTGCAAAAATCATAATAATCTCCAAATGATCTCTGTCAAATTTTTGCTTTCTCGTCTCGACTGGGCGGTAATCTACAGTTTCTGCATTTTTGCGTCGCCGTGTTTGCACACAAAATTATTCTCGATTCGTTTTTGAATTTTTAAATTTTCATCCAATTCTTCTTCTATTATATTCCAAGCTTCGATGAACATTATAAATCTTGAATTTTTGTTTTTCCGTTTAATATTCCGGTTTGAATCCGAAGTTTTATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGCAAAAATCATAATAATCTCCAAATGATCTCTGTCAAATTTTTGCTTTCTCGTCTCGACTGGGCGGTAATCTACAGTTTCTGCATTTTTGCGTCGCCGTGTTTGCACACAAAATTATTCTCGATTCGTTTTTGAATTTTTAAATTTTCATCCAATTCTTCTTCTATTATATTCCAAGMTTCGATGAACATTATAAATCTTGAATTTTTGTTTTTCCGTTTAATATTCCGGTTTGAATCCGAAGTTTTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb846</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1388620</contig_pos>
        <strand>+</strand>
        <context>AATTCTTCTT[C/G]TATTATATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTATTCTCGATTCGTTTTTGAATTTTTAAATTTTCATCCAATTCTTCTT</left_flank>
        <right_flank>TATTATATTCCAAGCTTCGATGAACATTATAAATCTTGAATTTTTGTTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTTTTTGATTTTGGCGGCATTTTTCGGAAGGGAAACAAGGTTTTTTAGCTTAGGCCTATAATTTTCAACAAATAAAGGGGAAATTTTGAAAAAAATCCCATAATTAAAGCTAGCATTCTCTTCTAACCCATAATTAACTTCCAGAGCCGGCCTGTATCTCCTGGAGCACCTGCCAGACGTGCAACTCGATTTGAAAACTCAAAAACTCTCCTACGATCTCACCAAGGGAAGCGCCGATGACTTGATGGAAATTGCGAGGATTCTCAGGAAGAGCAAATAATTAGATTTTTCTATAATTAGCTTCTTTTGTTTAATTTGACTCAAAACTTTTTTGCAAAAATCATAATAATCTCCAAATGATCTCTGTCAAATTTTTGCTTTCTCGTCTCGACTGGGCGGTAATCTACAGTTTCTGCATTTTTGCGTCGCCGTGTTTGCACACAAAATTATTCTCGATTCGTTTTTGAATTTTTAAATTTTCATCCAATTCTTCTTCTATTATATTCCAAGCTTCGATGAACATTATAAATCTTGAATTTTTGTTTTTCCGTTTAATATTCCGGTTTGAATCCGAAGTTTTATTTTGCAGTACAAAGATTTGTATCGCCAAAATTTCTATAATGATATTGAAGATATCGATATTTTCACTGTTCGTATAGCTTTTCCTCCCAATTTTCTCGCAATTAAACATATATTCACCTAGTGAAATGGTGGTCTTGGCACGACGGAGTGGGGGGAAGGCCAGAGACGCAGACCGCACGAAAATCGATACTTGATGCTGCATCGCTTCGCCAGAACTAGCGAACACTTGTTTTCATAATTCAGCTTTCTTTTTTCTTTTATATCAGTCTATTTTTGATAACTAAGCCCTTTTTGAAGAAAGTTGGATCAAAAATAATAGTTATCCTTCGAAATTTCCAGCAAATTAAATCAAATGTCTGATCGAAGTGGGAGATCAGACCACAACTACCATTCGAAGCCCTCCTGTTCCAGCGG</canonical>
            <polymorphic>AAATTTTTTTGATTTTGGCGGCATTTTTCGGAAGGGAAACAAGGTTTTTTAGCTTAGGCCTATAATTTTCAACAAATAAAGGGGAAATTTTGAAAAAAATCCCATAATTAAAGCTAGCATTCTCTTCTAACCCATAATTAACTTCCAGAGCCGGCCTGTATCTCCTGGAGCACCTGCCAGACGTGCAACTCGATTTGAAAACTCAAAAACTCTCCTACGATCTCACCAAGGGAAGCGCCGATGACTTGATGGAAATTGCGAGGATTCTCAGGAAGAGCAAATAATTAGATTTTTCTATAATTAGCTTCTTTTGTTTAATTTGACTCAAAACTTTTTTGCAAAAATCATAATAATCTCCAAATGATCTCTGTCAAATTTTTGCTTTCTCGTCTCGACTGGGCGGTAATCTACAGTTTCTGCATTTTTGCGTCGCCGTGTTTGCACACAAAATTATTCTCGATTCGTTTTTGAATTTTTAAATTTTCATCCAATTCTTCTTSTATTATATTCCAAGCTTCGATGAACATTATAAATCTTGAATTTTTGTTTTTCCGTTTAATATTCCGGTTTGAATCCGAAGTTTTATTTTGCAGTACAAAGATTTGTATCGCCAAAATTTCTATAATGATATTGAAGATATCGATATTTTCACTGTTCGTATAGCTTTTCCTCCCAATTTTCTCGCAATTAAACATATATTCACCTAGTGAAATGGTGGTCTTGGCACGACGGAGTGGGGGGAAGGCCAGAGACGCAGACCGCACGAAAATCGATACTTGATGCTGCATCGCTTCGCCAGAACTAGCGAACACTTGTTTTCATAATTCAGCTTTCTTTTTTCTTTTATATCAGTCTATTTTTGATAACTAAGCCCTTTTTGAAGAAAGTTGGATCAAAAATAATAGTTATCCTTCGAAATTTCCAGCAAATTAAATCAAATGTCTGATCGAAGTGGGAGATCAGACCACAACTACCATTCGAAGCCCTCCTGTTCCAGCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGCAAAAATCATAATAATCTCC</pcr_primer_p1>
		<pcr_primer_p2>AAAATAAAACTTCGGATTCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTGCAAAAATCATAATAATCTCCAAATGATCTCTGTCAAATTTTTGCTTTCTCGTCTCGACTGGGCGGTAATCTACAGTTTCTGCATTTTTGCGTCGCCGTGTTTGCACACAAAATTATTCTCGATTCGTTTTTGAATTTTTAAATTTTCATCCAATTCTTCTTCTATTATATTCCAAGCTTCGATGAACATTATAAATCTTGAATTTTTGTTTTTCCGTTTAATATTCCGGTTTGAATCCGAAGTTTTATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGCAAAAATCATAATAATCTCCAAATGATCTCTGTCAAATTTTTGCTTTCTCGTCTCGACTGGGCGGTAATCTACAGTTTCTGCATTTTTGCGTCGCCGTGTTTGCACACAAAATTATTCTCGATTCGTTTTTGAATTTTTAAATTTTCATCCAATTCTTCTTSTATTATATTCCAAGCTTCGATGAACATTATAAATCTTGAATTTTTGTTTTTCCGTTTAATATTCCGGTTTGAATCCGAAGTTTTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb847</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1388323</contig_pos>
        <strand>+</strand>
        <context>ATTTRAAAAC[C/T]CAAAAACTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCCTGTATCTCCTGGAGCACCTGCCAGACGTGCAACTCGATTTGAAAAC</left_flank>
        <right_flank>CAAAAACTCTCCTACGATCTCACCAAGGGAAGCGCCGATGACTTGATGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGAAGAACGACAGGAAGGAAGATCGGAAGGAGGATAGGAAGGATGATCGAAAAAAGGAGAAGGAGAAGAAGCATCATAGAGACAGTCGGGAGAGGTCCCGTGATAGGTCCAAAGAGTCGCGCGAAACAGAAACTAGGGAAACTAAGGATTCCCGGGACAAAGGGCTGAAAGAGAAGGATAAGGAGCTCAAGGAGAAGGAACCCAAGGAGAAAGATCCCAAAGAGTCCCCCGAAGAGTTGACAAAGAAACTCAATGAGTGCGAAGACCCACGTGTCATATATAAGTAAGACCACCTAAATTTTTTTGATTTTGGCGGCATTTTTCGGAAGGGAAACAAGGTTTTTTAGCTTAGGCCTATAATTTTCAACAAATAAAGGGGAAATTTTGAAAAAAATCCCATAATTAAAGCTAGCATTCTCTTCTAACCCATAATTAACTTCCAGAGCCGGCCTGTATCTCCTGGAGCACCTGCCAGACGTGCAACTCGATTTGAAAACTCAAAAACTCTCCTACGATCTCACCAAGGGAAGCGCCGATGACTTGATGGAAATTGCGAGGATTCTCAGGAAGAGCAAATAATTAGATTTTTCTATAATTAGCTTCTTTTGTTTAATTTGACTCAAAACTTTTTTGCAAAAATCATAATAATCTCCAAATGATCTCTGTCAAATTTTTGCTTTCTCGTCTCGACTGGGCGGTAATCTACAGTTTCTGCATTTTTGCGTCGCCGTGTTTGCACACAAAATTATTCTCGATTCGTTTTTGAATTTTTAAATTTTCATCCAATTCTTCTTCTATTATATTCCAAGCTTCGATGAACATTATAAATCTTGAATTTTTGTTTTTCCGTTTAATATTCCGGTTTGAATCCGAAGTTTTATTTTGCAGTACAAAGATTTGTATCGCCAAAATTTCTATAATGATATTGAAGATATCGATATTTTCACTGTTCGTATAGCTTTTCCTCCCAATTTTCTCGCAATTAAACATATATTCAC</canonical>
            <polymorphic>TCGGAAGAACGACAGGAAGGAAGATCGGAAGGAGGATAGGAAGGATGATCGAAAAAAGGAGAAGGAGAAGAAGCATCATAGAGACAGTCGGGAGAGGTCCCGTGATAGGTCCAAAGAGTCGCGCGAAACAGAAACTAGGGAAACTAAGGATTCCCGGGACAAAGGGCTGAAAGAGAAGGATAAGGAGCTCAAGGAGAAGGAACCCAAGGAGAAAGATCCCAAAGAGTCCCCCGAAGAGTTGACAAAGAAACTCAATGAGTGCGAAGACCCACGTGTCATATATAAGTAAGACCACCTAAATTTTTTTGATTTTGGCGGCATTTTTCGGAAGGGAAACAAGGTTTTTTAGCTTAGGCCTATAATTTTCAACAAATAAAGGGGAAATTTTGAAAAAAATCCCATAATTAAAGCTAGCATTCTCTTCTAACCCATAATTAACTTCCAGAGCCGGCCTGTATCTCCTGGAGCACCTGCCAGACGTGCAACTCGATTTGAAAACYCAAAAACTCTCCTACGATCTCACCAAGGGAAGCGCCGATGACTTGATGGAAATTGCGAGGATTCTCAGGAAGAGCAAATAATTAGATTTTTCTATAATTAGCTTCTTTTGTTTAATTTGACTCAAAACTTTTTTGCAAAAATCATAATAATCTCCAAATGATCTCTGTCAAATTTTTGCTTTCTCGTCTCGACTGGGCGGTAATCTACAGTTTCTGCATTTTTGCGTCGCCGTGTTTGCACACAAAATTATTCTCGATTCGTTTTTGAATTTTTAAATTTTCATCCAATTCTTCTTCTATTATATTCCAAGCTTCGATGAACATTATAAATCTTGAATTTTTGTTTTTCCGTTTAATATTCCGGTTTGAATCCGAAGTTTTATTTTGCAGTACAAAGATTTGTATCGCCAAAATTTCTATAATGATATTGAAGATATCGATATTTTCACTGTTCGTATAGCTTTTCCTCCCAATTTTCTCGCAATTAAACATATATTCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGCATTCTCTTCTAACCCATAA</pcr_primer_p1>
		<pcr_primer_p2>TCATTTGGAGATTATTATGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGCATTCTCTTCTAACCCATAATTAACTTCCAGAGCCGGCCTGTATCTCCTGGAGCACCTGCCAGACGTGCAACTCGATTTGAAAACTCAAAAACTCTCCTACGATCTCACCAAGGGAAGCGCCGATGACTTGATGGAAATTGCGAGGATTCTCAGGAAGAGCAAATAATTAGATTTTTCTATAATTAGCTTCTTTTGTTTAATTTGACTCAAAACTTTTTTGCAAAAATCATAATAATCTCCAAATGA</canonical_amplicon>
		<polymorphic_amplicon>TAGCATTCTCTTCTAACCCATAATTAACTTCCAGAGCCGGCCTGTATCTCCTGGAGCACCTGCCAGACGTGCAACTCGATTTGAAAACYCAAAAACTCTCCTACGATCTCACCAAGGGAAGCGCCGATGACTTGATGGAAATTGCGAGGATTCTCAGGAAGAGCAAATAATTAGATTTTTCTATAATTAGCTTCTTTTGTTTAATTTGACTCAAAACTTTTTTGCAAAAATCATAATAATCTCCAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb848</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1388317</contig_pos>
        <strand>+</strand>
        <context>AACTCGATTT[A/G]AAAACYCAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAGCCGGCCTGTATCTCCTGGAGCACCTGCCAGACGTGCAACTCGATTT</left_flank>
        <right_flank>AAAACTCAAAAACTCTCCTACGATCTCACCAAGGGAAGCGCCGATGACTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATGATCGGAAGAACGACAGGAAGGAAGATCGGAAGGAGGATAGGAAGGATGATCGAAAAAAGGAGAAGGAGAAGAAGCATCATAGAGACAGTCGGGAGAGGTCCCGTGATAGGTCCAAAGAGTCGCGCGAAACAGAAACTAGGGAAACTAAGGATTCCCGGGACAAAGGGCTGAAAGAGAAGGATAAGGAGCTCAAGGAGAAGGAACCCAAGGAGAAAGATCCCAAAGAGTCCCCCGAAGAGTTGACAAAGAAACTCAATGAGTGCGAAGACCCACGTGTCATATATAAGTAAGACCACCTAAATTTTTTTGATTTTGGCGGCATTTTTCGGAAGGGAAACAAGGTTTTTTAGCTTAGGCCTATAATTTTCAACAAATAAAGGGGAAATTTTGAAAAAAATCCCATAATTAAAGCTAGCATTCTCTTCTAACCCATAATTAACTTCCAGAGCCGGCCTGTATCTCCTGGAGCACCTGCCAGACGTGCAACTCGATTTGAAAACTCAAAAACTCTCCTACGATCTCACCAAGGGAAGCGCCGATGACTTGATGGAAATTGCGAGGATTCTCAGGAAGAGCAAATAATTAGATTTTTCTATAATTAGCTTCTTTTGTTTAATTTGACTCAAAACTTTTTTGCAAAAATCATAATAATCTCCAAATGATCTCTGTCAAATTTTTGCTTTCTCGTCTCGACTGGGCGGTAATCTACAGTTTCTGCATTTTTGCGTCGCCGTGTTTGCACACAAAATTATTCTCGATTCGTTTTTGAATTTTTAAATTTTCATCCAATTCTTCTTCTATTATATTCCAAGCTTCGATGAACATTATAAATCTTGAATTTTTGTTTTTCCGTTTAATATTCCGGTTTGAATCCGAAGTTTTATTTTGCAGTACAAAGATTTGTATCGCCAAAATTTCTATAATGATATTGAAGATATCGATATTTTCACTGTTCGTATAGCTTTTCCTCCCAATTTTCTCGCAATTAAACATAT</canonical>
            <polymorphic>AGATGATCGGAAGAACGACAGGAAGGAAGATCGGAAGGAGGATAGGAAGGATGATCGAAAAAAGGAGAAGGAGAAGAAGCATCATAGAGACAGTCGGGAGAGGTCCCGTGATAGGTCCAAAGAGTCGCGCGAAACAGAAACTAGGGAAACTAAGGATTCCCGGGACAAAGGGCTGAAAGAGAAGGATAAGGAGCTCAAGGAGAAGGAACCCAAGGAGAAAGATCCCAAAGAGTCCCCCGAAGAGTTGACAAAGAAACTCAATGAGTGCGAAGACCCACGTGTCATATATAAGTAAGACCACCTAAATTTTTTTGATTTTGGCGGCATTTTTCGGAAGGGAAACAAGGTTTTTTAGCTTAGGCCTATAATTTTCAACAAATAAAGGGGAAATTTTGAAAAAAATCCCATAATTAAAGCTAGCATTCTCTTCTAACCCATAATTAACTTCCAGAGCCGGCCTGTATCTCCTGGAGCACCTGCCAGACGTGCAACTCGATTTRAAAACTCAAAAACTCTCCTACGATCTCACCAAGGGAAGCGCCGATGACTTGATGGAAATTGCGAGGATTCTCAGGAAGAGCAAATAATTAGATTTTTCTATAATTAGCTTCTTTTGTTTAATTTGACTCAAAACTTTTTTGCAAAAATCATAATAATCTCCAAATGATCTCTGTCAAATTTTTGCTTTCTCGTCTCGACTGGGCGGTAATCTACAGTTTCTGCATTTTTGCGTCGCCGTGTTTGCACACAAAATTATTCTCGATTCGTTTTTGAATTTTTAAATTTTCATCCAATTCTTCTTCTATTATATTCCAAGCTTCGATGAACATTATAAATCTTGAATTTTTGTTTTTCCGTTTAATATTCCGGTTTGAATCCGAAGTTTTATTTTGCAGTACAAAGATTTGTATCGCCAAAATTTCTATAATGATATTGAAGATATCGATATTTTCACTGTTCGTATAGCTTTTCCTCCCAATTTTCTCGCAATTAAACATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGCATTCTCTTCTAACCCATAA</pcr_primer_p1>
		<pcr_primer_p2>TCATTTGGAGATTATTATGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGCATTCTCTTCTAACCCATAATTAACTTCCAGAGCCGGCCTGTATCTCCTGGAGCACCTGCCAGACGTGCAACTCGATTTGAAAACTCAAAAACTCTCCTACGATCTCACCAAGGGAAGCGCCGATGACTTGATGGAAATTGCGAGGATTCTCAGGAAGAGCAAATAATTAGATTTTTCTATAATTAGCTTCTTTTGTTTAATTTGACTCAAAACTTTTTTGCAAAAATCATAATAATCTCCAAATGA</canonical_amplicon>
		<polymorphic_amplicon>TAGCATTCTCTTCTAACCCATAATTAACTTCCAGAGCCGGCCTGTATCTCCTGGAGCACCTGCCAGACGTGCAACTCGATTTRAAAACTCAAAAACTCTCCTACGATCTCACCAAGGGAAGCGCCGATGACTTGATGGAAATTGCGAGGATTCTCAGGAAGAGCAAATAATTAGATTTTTCTATAATTAGCTTCTTTTGTTTAATTTGACTCAAAACTTTTTTGCAAAAATCATAATAATCTCCAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb849</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1388133</contig_pos>
        <strand></strand>
        <context>atttttttga[T/A]tttggcggca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGCGAAGACCCACGTGTCATATATAAGTAAGACCACCTAAATTTTTTTGA</left_flank>
        <right_flank>TTTGGCGGCATTTTTCGGAAGGGAAACAAGGTTTTTTAGCTTAGGCCTAT</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAGTACTTGGAATTGATCAAAAAGTATCGACCGAAGAAGCGGAAGGCGTCGATGGCCTACGGATCGTCGAATGATGAGAAGTCTCCGCATTCGAAGCGAGCATTGTCACCGATTAAAGAGGAGAAGGAGAGAAAGAAGCGGCCGAGGATAGAGGAAAGGGAGGATCGGAAGGAGGATCGGAGAGATGATCGGAAGAACGACAGGAAGGAAGATCGGAAGGAGGATAGGAAGGATGATCGAAAAAAGGAGAAGGAGAAGAAGCATCATAGAGACAGTCGGGAGAGGTCCCGTGATAGGTCCAAAGAGTCGCGCGAAACAGAAACTAGGGAAACTAAGGATTCCCGGGACAAAGGGCTGAAAGAGAAGGATAAGGAGCTCAAGGAGAAGGAACCCAAGGAGAAAGATCCCAAAGAGTCCCCCGAAGAGTTGACAAAGAAACTCAATGAGTGCGAAGACCCACGTGTCATATATAAGTAAGACCACCTAAATTTTTTTGATTTTGGCGGCATTTTTCGGAAGGGAAACAAGGTTTTTTAGCTTAGGCCTATAATTTTCAACAAATAAAGGGGAAATTTTGAAAAAAATCCCATAATTAAAGCTAGCATTCTCTTCTAACCCATAATTAACTTCCAGAGCCGGCCTGTATCTCCTGGAGCACCTGCCAGACGTGCAACTCGATTTGAAAACTCAAAAACTCTCCTACGATCTCACCAAGGGAAGCGCCGATGACTTGATGGAAATTGCGAGGATTCTCAGGAAGAGCAAATAATTAGATTTTTCTATAATTAGCTTCTTTTGTTTAATTTGACTCAAAACTTTTTTGCAAAAATCATAATAATCTCCAAATGATCTCTGTCAAATTTTTGCTTTCTCGTCTCGACTGGGCGGTAATCTACAGTTTCTGCATTTTTGCGTCGCCGTGTTTGCACACAAAATTATTCTCGATTCGTTTTTGAATTTTTAAATTTTCATCCAATTCTTCTTCTATTATATTCCAA</canonical>
            <polymorphic>CAGAGTACTTGGAATTGATCAAAAAGTATCGACCGAAGAAGCGGAAGGCGTCGATGGCCTACGGATCGTCGAATGATGAGAAGTCTCCGCATTCGAAGCGAGCATTGTCACCGATTAAAGAGGAGAAGGAGAGAAAGAAGCGGCCGAGGATAGAGGAAAGGGAGGATCGGAAGGAGGATCGGAGAGATGATCGGAAGAACGACAGGAAGGAAGATCGGAAGGAGGATAGGAAGGATGATCGAAAAAAGGAGAAGGAGAAGAAGCATCATAGAGACAGTCGGGAGAGGTCCCGTGATAGGTCCAAAGAGTCGCGCGAAACAGAAACTAGGGAAACTAAGGATTCCCGGGACAAAGGGCTGAAAGAGAAGGATAAGGAGCTCAAGGAGAAGGAACCCAAGGAGAAAGATCCCAAAGAGTCCCCCGAAGAGTTGACAAAGAAACTCAATGAGTGCGAAGACCCACGTGTCATATATAAGTAAGACCACCTAAATTTTTTTGAWTTTGGCGGCATTTTTCGGAAGGGAAACAAGGTTTTTTAGCTTAGGCCTATAATTTTCAACAAATAAAGGGGAAATTTTGAAAAAAATCCCATAATTAAAGCTAGCATTCTCTTCTAACCCATAATTAACTTCCAGAGCCGGCCTGTATCTCCTGGAGCACCTGCCAGACGTGCAACTCGATTTGAAAACTCAAAAACTCTCCTACGATCTCACCAAGGGAAGCGCCGATGACTTGATGGAAATTGCGAGGATTCTCAGGAAGAGCAAATAATTAGATTTTTCTATAATTAGCTTCTTTTGTTTAATTTGACTCAAAACTTTTTTGCAAAAATCATAATAATCTCCAAATGATCTCTGTCAAATTTTTGCTTTCTCGTCTCGACTGGGCGGTAATCTACAGTTTCTGCATTTTTGCGTCGCCGTGTTTGCACACAAAATTATTCTCGATTCGTTTTTGAATTTTTAAATTTTCATCCAATTCTTCTTCTATTATATTCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGAGTTGACAAAGAAACTCAA</pcr_primer_p1>
		<pcr_primer_p2>CTCTGGAAGTTAATTATGGGTTA</pcr_primer_p2>
		<pcr_amplicon_size>215</pcr_amplicon_size>
		<canonical_amplicon>GAAGAGTTGACAAAGAAACTCAATGAGTGCGAAGACCCACGTGTCATATATAAGTAAGACCACCTAAATTTTTTTGATTTTGGCGGCATTTTTCGGAAGGGAAACAAGGTTTTTTAGCTTAGGCCTATAATTTTCAACAAATAAAGGGGAAATTTTGAAAAAAATCCCATAATTAAAGCTAGCATTCTCTTCTAACCCATAATTAACTTCCAGAG</canonical_amplicon>
		<polymorphic_amplicon>GAAGAGTTGACAAAGAAACTCAATGAGTGCGAAGACCCACGTGTCATATATAAGTAAGACCACCTAAATTTTTTTGAWTTTGGCGGCATTTTTCGGAAGGGAAACAAGGTTTTTTAGCTTAGGCCTATAATTTTCAACAAATAAAGGGGAAATTTTGAAAAAAATCCCATAATTAAAGCTAGCATTCTCTTCTAACCCATAATTAACTTCCAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb850</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1408744</contig_pos>
        <strand>+</strand>
        <context>CATATTCACA[G/T]AATTAGGTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCATTCTTACATGTACATAGTTACAAATGAATTCAGAATACATATTCACA</left_flank>
        <right_flank>AATTAGGTGACCAGCATGAAAATGGAAATTAAAGAAAAGAAAATAAGGCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCAATCTGGAAAATGGGGCACATGATTCGGAGGGTACAAAAATTTTGGGGTCATTGGGATACAAAGCAATTTAAGGGTACAAAATCTTCAATTCGTGGGTACAAAATATCTAGCAATACTTAATTTGTACCCCCGAACCACTTTGTATCCTCTTGTACCCTCCGAATTATGTGCCGGAAAATGGTCCTGGAAGTCTTGGAATGTGTCTTACTGAGCCTTACCGCGTTTAGGCTCGTTTTGAAGCTCATGGCATGCTGAAAAGAACAGTGAACTCAAAATGTGTAAATTTCAAAATTTTAGAGAAAGTTTCTGAATCGCAATTTTTCGAAATTTTGGTTTCAGCTCATTTCCCAATTTCCTGGAACTTTTTTGATATTCTTCGGCTCAAAAATTGCGGAATCCCGGACTCTTTTAACAGTTAAGGTATTGAAATATATAATTTATTGCTCATTCTTACATGTACATAGTTACAAATGAATTCAGAATACATATTCACATAATTAGGTGACCAGCATGAAAATGGAAATTAAAGAAAAGAAAATAAGGCAAAAAAGTTATGGTTCAACAATTTCAGAATCCCCGTCTTCAGCCACGTCATCAGCCTCCGCACCAGTCTCCGCGTCTTCTACCGACACATCCAACACCTCAAAATCTTCGTCGATTTTCGAATTTGCCGCTCCAATATCATCAAACTCCTTCATCTCGATTTTCATACTAACTCCAGTATATGGCTCAAACTTTGGAAGATATTTCGGACGTTTCTCCAAAAATTCAAACATCGGAGGATTCGAAGCCGTCAAGGTGGTCTTCTGAAGTTCGTCACAGAGATTTTCGAATTCCTCGCGAGTCTCGCAGAAAAGAGCAAGAGCCAATGAGGGATCAATGCTGTCATACTCCATCCATTGCATCATTTGACAGTGATACGTGGAGTCATTCATTTTCGTGTAGACGTCAGAAGTTTGCGATGGTAATGGTTCCAAGTCTTCCAACTCGTGGAA</canonical>
            <polymorphic>AGCCAATCTGGAAAATGGGGCACATGATTCGGAGGGTACAAAAATTTTGGGGTCATTGGGATACAAAGCAATTTAAGGGTACAAAATCTTCAATTCGTGGGTACAAAATATCTAGCAATACTTAATTTGTACCCCCGAACCACTTTGTATCCTCTTGTACCCTCCGAATTATGTGCCGGAAAATGGTCCTGGAAGTCTTGGAATGTGTCTTACTGAGCCTTACCGCGTTTAGGCTCGTTTTGAAGCTCATGGCATGCTGAAAAGAACAGTGAACTCAAAATGTGTAAATTTCAAAATTTTAGAGAAAGTTTCTGAATCGCAATTTTTCGAAATTTTGGTTTCAGCTCATTTCCCAATTTCCTGGAACTTTTTTGATATTCTTCGGCTCAAAAATTGCGGAATCCCGGACTCTTTTAACAGTTAAGGTATTGAAATATATAATTTATTGCTCATTCTTACATGTACATAGTTACAAATGAATTCAGAATACATATTCACAKAATTAGGTGACCAGCATGAAAATGGAAATTAAAGAAAAGAAAATAAGGCAAAAAAGTTATGGTTCAACAATTTCAGAATCCCCGTCTTCAGCCACGTCATCAGCCTCCGCACCAGTCTCCGCGTCTTCTACCGACACATCCAACACCTCAAAATCTTCGTCGATTTTCGAATTTGCCGCTCCAATATCATCAAACTCCTTCATCTCGATTTTCATACTAACTCCAGTATATGGCTCAAACTTTGGAAGATATTTCGGACGTTTCTCCAAAAATTCAAACATCGGAGGATTCGAAGCCGTCAAGGTGGTCTTCTGAAGTTCGTCACAGAGATTTTCGAATTCCTCGCGAGTCTCGCAGAAAAGAGCAAGAGCCAATGAGGGATCAATGCTGTCATACTCCATCCATTGCATCATTTGACAGTGATACGTGGAGTCATTCATTTTCGTGTAGACGTCAGAAGTTTGCGATGGTAATGGTTCCAAGTCTTCCAACTCGTGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTTCTGAATCGCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGCCTTATTTTCTTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGTTTCTGAATCGCAATTTTTCGAAATTTTGGTTTCAGCTCATTTCCCAATTTCCTGGAACTTTTTTGATATTCTTCGGCTCAAAAATTGCGGAATCCCGGACTCTTTTAACAGTTAAGGTATTGAAATATATAATTTATTGCTCATTCTTACATGTACATAGTTACAAATGAATTCAGAATACATATTCACATAATTAGGTGACCAGCATGAAAATGGAAATTAAAGAAAAGAAAATAAGGCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AGTTTCTGAATCGCAATTTTTCGAAATTTTGGTTTCAGCTCATTTCCCAATTTCCTGGAACTTTTTTGATATTCTTCGGCTCAAAAATTGCGGAATCCCGGACTCTTTTAACAGTTAAGGTATTGAAATATATAATTTATTGCTCATTCTTACATGTACATAGTTACAAATGAATTCAGAATACATATTCACAKAATTAGGTGACCAGCATGAAAATGGAAATTAAAGAAAAGAAAATAAGGCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb851</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1408762</contig_pos>
        <strand></strand>
        <context>TGACCAGCAT[G/A]AAAATGGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGTTACAAATGAATTCAGAATACATATTCACATAATTAGGTGACCAGCAT</left_flank>
        <right_flank>AAAATGGAAATTAAAGAAAAGAAAATAAGGCAAAAAAGTTATGGTTCAAC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCACATGATTCGGAGGGTACAAAAATTTTGGGGTCATTGGGATACAAAGCAATTTAAGGGTACAAAATCTTCAATTCGTGGGTACAAAATATCTAGCAATACTTAATTTGTACCCCCGAACCACTTTGTATCCTCTTGTACCCTCCGAATTATGTGCCGGAAAATGGTCCTGGAAGTCTTGGAATGTGTCTTACTGAGCCTTACCGCGTTTAGGCTCGTTTTGAAGCTCATGGCATGCTGAAAAGAACAGTGAACTCAAAATGTGTAAATTTCAAAATTTTAGAGAAAGTTTCTGAATCGCAATTTTTCGAAATTTTGGTTTCAGCTCATTTCCCAATTTCCTGGAACTTTTTTGATATTCTTCGGCTCAAAAATTGCGGAATCCCGGACTCTTTTAACAGTTAAGGTATTGAAATATATAATTTATTGCTCATTCTTACATGTACATAGTTACAAATGAATTCAGAATACATATTCACATAATTAGGTGACCAGCATGAAAATGGAAATTAAAGAAAAGAAAATAAGGCAAAAAAGTTATGGTTCAACAATTTCAGAATCCCCGTCTTCAGCCACGTCATCAGCCTCCGCACCAGTCTCCGCGTCTTCTACCGACACATCCAACACCTCAAAATCTTCGTCGATTTTCGAATTTGCCGCTCCAATATCATCAAACTCCTTCATCTCGATTTTCATACTAACTCCAGTATATGGCTCAAACTTTGGAAGATATTTCGGACGTTTCTCCAAAAATTCAAACATCGGAGGATTCGAAGCCGTCAAGGTGGTCTTCTGAAGTTCGTCACAGAGATTTTCGAATTCCTCGCGAGTCTCGCAGAAAAGAGCAAGAGCCAATGAGGGATCAATGCTGTCATACTCCATCCATTGCATCATTTGACAGTGATACGTGGAGTCATTCATTTTCGTGTAGACGTCAGAAGTTTGCGATGGTAATGGTTCCAAGTCTTCCAACTCGTGGAACCCATTATCATCGATTTT</canonical>
            <polymorphic>GGCACATGATTCGGAGGGTACAAAAATTTTGGGGTCATTGGGATACAAAGCAATTTAAGGGTACAAAATCTTCAATTCGTGGGTACAAAATATCTAGCAATACTTAATTTGTACCCCCGAACCACTTTGTATCCTCTTGTACCCTCCGAATTATGTGCCGGAAAATGGTCCTGGAAGTCTTGGAATGTGTCTTACTGAGCCTTACCGCGTTTAGGCTCGTTTTGAAGCTCATGGCATGCTGAAAAGAACAGTGAACTCAAAATGTGTAAATTTCAAAATTTTAGAGAAAGTTTCTGAATCGCAATTTTTCGAAATTTTGGTTTCAGCTCATTTCCCAATTTCCTGGAACTTTTTTGATATTCTTCGGCTCAAAAATTGCGGAATCCCGGACTCTTTTAACAGTTAAGGTATTGAAATATATAATTTATTGCTCATTCTTACATGTACATAGTTACAAATGAATTCAGAATACATATTCACATAATTAGGTGACCAGCATRAAAATGGAAATTAAAGAAAAGAAAATAAGGCAAAAAAGTTATGGTTCAACAATTTCAGAATCCCCGTCTTCAGCCACGTCATCAGCCTCCGCACCAGTCTCCGCGTCTTCTACCGACACATCCAACACCTCAAAATCTTCGTCGATTTTCGAATTTGCCGCTCCAATATCATCAAACTCCTTCATCTCGATTTTCATACTAACTCCAGTATATGGCTCAAACTTTGGAAGATATTTCGGACGTTTCTCCAAAAATTCAAACATCGGAGGATTCGAAGCCGTCAAGGTGGTCTTCTGAAGTTCGTCACAGAGATTTTCGAATTCCTCGCGAGTCTCGCAGAAAAGAGCAAGAGCCAATGAGGGATCAATGCTGTCATACTCCATCCATTGCATCATTTGACAGTGATACGTGGAGTCATTCATTTTCGTGTAGACGTCAGAAGTTTGCGATGGTAATGGTTCCAAGTCTTCCAACTCGTGGAACCCATTATCATCGATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 225 206 56 5 5</canonical_bands>
                <polymorphic_bands>559 225 206 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATCCCGGACTCTTTTAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGAGGTGTTGGATGTG</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>GAATCCCGGACTCTTTTAACAGTTAAGGTATTGAAATATATAATTTATTGCTCATTCTTACATGTACATAGTTACAAATGAATTCAGAATACATATTCACATAATTAGGTGACCAGCATGAAAATGGAAATTAAAGAAAAGAAAATAAGGCAAAAAAGTTATGGTTCAACAATTTCAGAATCCCCGTCTTCAGCCACGTCATCAGCCTCCGCACCAGTCTCCGCGTCTTCTACCGACACATCCAACACCTCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>GAATCCCGGACTCTTTTAACAGTTAAGGTATTGAAATATATAATTTATTGCTCATTCTTACATGTACATAGTTACAAATGAATTCAGAATACATATTCACATAATTAGGTGACCAGCATRAAAATGGAAATTAAAGAAAAGAAAATAAGGCAAAAAAGTTATGGTTCAACAATTTCAGAATCCCCGTCTTCAGCCACGTCATCAGCCTCCGCACCAGTCTCCGCGTCTTCTACCGACACATCCAACACCTCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb852</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1408865</contig_pos>
        <strand>+</strand>
        <context>ACCAGTCTCC[A/G]CGTCTTCTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCAGAATCCCCGTCTTCAGCCACGTCATCAGCCTCCGCACCAGTCTCC</left_flank>
        <right_flank>CGTCTTCTACCGACACATCCAACACCTCAAAATCTTCGTCGATTTTCGAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAATTTGTACCCCCGAACCACTTTGTATCCTCTTGTACCCTCCGAATTATGTGCCGGAAAATGGTCCTGGAAGTCTTGGAATGTGTCTTACTGAGCCTTACCGCGTTTAGGCTCGTTTTGAAGCTCATGGCATGCTGAAAAGAACAGTGAACTCAAAATGTGTAAATTTCAAAATTTTAGAGAAAGTTTCTGAATCGCAATTTTTCGAAATTTTGGTTTCAGCTCATTTCCCAATTTCCTGGAACTTTTTTGATATTCTTCGGCTCAAAAATTGCGGAATCCCGGACTCTTTTAACAGTTAAGGTATTGAAATATATAATTTATTGCTCATTCTTACATGTACATAGTTACAAATGAATTCAGAATACATATTCACATAATTAGGTGACCAGCATGAAAATGGAAATTAAAGAAAAGAAAATAAGGCAAAAAAGTTATGGTTCAACAATTTCAGAATCCCCGTCTTCAGCCACGTCATCAGCCTCCGCACCAGTCTCCGCGTCTTCTACCGACACATCCAACACCTCAAAATCTTCGTCGATTTTCGAATTTGCCGCTCCAATATCATCAAACTCCTTCATCTCGATTTTCATACTAACTCCAGTATATGGCTCAAACTTTGGAAGATATTTCGGACGTTTCTCCAAAAATTCAAACATCGGAGGATTCGAAGCCGTCAAGGTGGTCTTCTGAAGTTCGTCACAGAGATTTTCGAATTCCTCGCGAGTCTCGCAGAAAAGAGCAAGAGCCAATGAGGGATCAATGCTGTCATACTCCATCCATTGCATCATTTGACAGTGATACGTGGAGTCATTCATTTTCGTGTAGACGTCAGAAGTTTGCGATGGTAATGGTTCCAAGTCTTCCAACTCGTGGAACCCATTATCATCGATTTTCTCCACTTTCTCTGGTGTCGAATCTCCAGATGATTGTTGTTGTTGTTCCTTCTCAACGAAAAACTTTGAAGTCTTCGGACGACAATGATGTGGATCCAAATAG</canonical>
            <polymorphic>TTAATTTGTACCCCCGAACCACTTTGTATCCTCTTGTACCCTCCGAATTATGTGCCGGAAAATGGTCCTGGAAGTCTTGGAATGTGTCTTACTGAGCCTTACCGCGTTTAGGCTCGTTTTGAAGCTCATGGCATGCTGAAAAGAACAGTGAACTCAAAATGTGTAAATTTCAAAATTTTAGAGAAAGTTTCTGAATCGCAATTTTTCGAAATTTTGGTTTCAGCTCATTTCCCAATTTCCTGGAACTTTTTTGATATTCTTCGGCTCAAAAATTGCGGAATCCCGGACTCTTTTAACAGTTAAGGTATTGAAATATATAATTTATTGCTCATTCTTACATGTACATAGTTACAAATGAATTCAGAATACATATTCACATAATTAGGTGACCAGCATGAAAATGGAAATTAAAGAAAAGAAAATAAGGCAAAAAAGTTATGGTTCAACAATTTCAGAATCCCCGTCTTCAGCCACGTCATCAGCCTCCGCACCAGTCTCCRCGTCTTCTACCGACACATCCAACACCTCAAAATCTTCGTCGATTTTCGAATTTGCCGCTCCAATATCATCAAACTCCTTCATCTCGATTTTCATACTAACTCCAGTATATGGCTCAAACTTTGGAAGATATTTCGGACGTTTCTCCAAAAATTCAAACATCGGAGGATTCGAAGCCGTCAAGGTGGTCTTCTGAAGTTCGTCACAGAGATTTTCGAATTCCTCGCGAGTCTCGCAGAAAAGAGCAAGAGCCAATGAGGGATCAATGCTGTCATACTCCATCCATTGCATCATTTGACAGTGATACGTGGAGTCATTCATTTTCGTGTAGACGTCAGAAGTTTGCGATGGTAATGGTTCCAAGTCTTCCAACTCGTGGAACCCATTATCATCGATTTTCTCCACTTTCTCTGGTGTCGAATCTCCAGATGATTGTTGTTGTTGTTCCTTCTCAACGAAAAACTTTGAAGTCTTCGGACGACAATGATGTGGATCCAAATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>396 276 224 104</canonical_bands>
                <polymorphic_bands>620 276 104</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>445 384 102 57 12</canonical_bands>
                <polymorphic_bands>445 384 102 69</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAAAAGAAAATAAGGCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATGTTTGAATTTTTGGAGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAAAAGAAAATAAGGCAAAAAAGTTATGGTTCAACAATTTCAGAATCCCCGTCTTCAGCCACGTCATCAGCCTCCGCACCAGTCTCCGCGTCTTCTACCGACACATCCAACACCTCAAAATCTTCGTCGATTTTCGAATTTGCCGCTCCAATATCATCAAACTCCTTCATCTCGATTTTCATACTAACTCCAGTATATGGCTCAAACTTTGGAAGATATTTCGGACGTTTCTCCAAAAATTCAAACAT</canonical_amplicon>
		<polymorphic_amplicon>AAGAAAAGAAAATAAGGCAAAAAAGTTATGGTTCAACAATTTCAGAATCCCCGTCTTCAGCCACGTCATCAGCCTCCGCACCAGTCTCCRCGTCTTCTACCGACACATCCAACACCTCAAAATCTTCGTCGATTTTCGAATTTGCCGCTCCAATATCATCAAACTCCTTCATCTCGATTTTCATACTAACTCCAGTATATGGCTCAAACTTTGGAAGATATTTCGGACGTTTCTCCAAAAATTCAAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb853</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1408961</contig_pos>
        <strand>+</strand>
        <context>GATTTTCATA[A/C]TAACTCCAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCGAATTTGCCGCTCCAATATCATCAAACTCCTTCATCTCGATTTTCATA</left_flank>
        <right_flank>TAACTCCAGTATATGGCTCAAACTTTGGAAGATATTTCGGACGTTTCTCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTACCGCGTTTAGGCTCGTTTTGAAGCTCATGGCATGCTGAAAAGAACAGTGAACTCAAAATGTGTAAATTTCAAAATTTTAGAGAAAGTTTCTGAATCGCAATTTTTCGAAATTTTGGTTTCAGCTCATTTCCCAATTTCCTGGAACTTTTTTGATATTCTTCGGCTCAAAAATTGCGGAATCCCGGACTCTTTTAACAGTTAAGGTATTGAAATATATAATTTATTGCTCATTCTTACATGTACATAGTTACAAATGAATTCAGAATACATATTCACATAATTAGGTGACCAGCATGAAAATGGAAATTAAAGAAAAGAAAATAAGGCAAAAAAGTTATGGTTCAACAATTTCAGAATCCCCGTCTTCAGCCACGTCATCAGCCTCCGCACCAGTCTCCGCGTCTTCTACCGACACATCCAACACCTCAAAATCTTCGTCGATTTTCGAATTTGCCGCTCCAATATCATCAAACTCCTTCATCTCGATTTTCATACTAACTCCAGTATATGGCTCAAACTTTGGAAGATATTTCGGACGTTTCTCCAAAAATTCAAACATCGGAGGATTCGAAGCCGTCAAGGTGGTCTTCTGAAGTTCGTCACAGAGATTTTCGAATTCCTCGCGAGTCTCGCAGAAAAGAGCAAGAGCCAATGAGGGATCAATGCTGTCATACTCCATCCATTGCATCATTTGACAGTGATACGTGGAGTCATTCATTTTCGTGTAGACGTCAGAAGTTTGCGATGGTAATGGTTCCAAGTCTTCCAACTCGTGGAACCCATTATCATCGATTTTCTCCACTTTCTCTGGTGTCGAATCTCCAGATGATTGTTGTTGTTGTTCCTTCTCAACGAAAAACTTTGAAGTCTTCGGACGACAATGATGTGGATCCAAATAGAATAGTTTTGTTCCGGCGATTCCAACGAAGTAATGGGCAAGATTTGGTTTACCGCCAATGATACCAACGCATTGGGGAAGTTTGAAGAATTCTTGA</canonical>
            <polymorphic>CCTTACCGCGTTTAGGCTCGTTTTGAAGCTCATGGCATGCTGAAAAGAACAGTGAACTCAAAATGTGTAAATTTCAAAATTTTAGAGAAAGTTTCTGAATCGCAATTTTTCGAAATTTTGGTTTCAGCTCATTTCCCAATTTCCTGGAACTTTTTTGATATTCTTCGGCTCAAAAATTGCGGAATCCCGGACTCTTTTAACAGTTAAGGTATTGAAATATATAATTTATTGCTCATTCTTACATGTACATAGTTACAAATGAATTCAGAATACATATTCACATAATTAGGTGACCAGCATGAAAATGGAAATTAAAGAAAAGAAAATAAGGCAAAAAAGTTATGGTTCAACAATTTCAGAATCCCCGTCTTCAGCCACGTCATCAGCCTCCGCACCAGTCTCCGCGTCTTCTACCGACACATCCAACACCTCAAAATCTTCGTCGATTTTCGAATTTGCCGCTCCAATATCATCAAACTCCTTCATCTCGATTTTCATAMTAACTCCAGTATATGGCTCAAACTTTGGAAGATATTTCGGACGTTTCTCCAAAAATTCAAACATCGGAGGATTCGAAGCCGTCAAGGTGGTCTTCTGAAGTTCGTCACAGAGATTTTCGAATTCCTCGCGAGTCTCGCAGAAAAGAGCAAGAGCCAATGAGGGATCAATGCTGTCATACTCCATCCATTGCATCATTTGACAGTGATACGTGGAGTCATTCATTTTCGTGTAGACGTCAGAAGTTTGCGATGGTAATGGTTCCAAGTCTTCCAACTCGTGGAACCCATTATCATCGATTTTCTCCACTTTCTCTGGTGTCGAATCTCCAGATGATTGTTGTTGTTGTTCCTTCTCAACGAAAAACTTTGAAGTCTTCGGACGACAATGATGTGGATCCAAATAGAATAGTTTTGTTCCGGCGATTCCAACGAAGTAATGGGCAAGATTTGGTTTACCGCCAATGATACCAACGCATTGGGGAAGTTTGAAGAATTCTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAAAGAAAATAAGGCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATGTTTGAATTTTTGGAGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAAAAGAAAATAAGGCAAAAAAGTTATGGTTCAACAATTTCAGAATCCCCGTCTTCAGCCACGTCATCAGCCTCCGCACCAGTCTCCGCGTCTTCTACCGACACATCCAACACCTCAAAATCTTCGTCGATTTTCGAATTTGCCGCTCCAATATCATCAAACTCCTTCATCTCGATTTTCATACTAACTCCAGTATATGGCTCAAACTTTGGAAGATATTTCGGACGTTTCTCCAAAAATTCAAACAT</canonical_amplicon>
		<polymorphic_amplicon>AAGAAAAGAAAATAAGGCAAAAAAGTTATGGTTCAACAATTTCAGAATCCCCGTCTTCAGCCACGTCATCAGCCTCCGCACCAGTCTCCGCGTCTTCTACCGACACATCCAACACCTCAAAATCTTCGTCGATTTTCGAATTTGCCGCTCCAATATCATCAAACTCCTTCATCTCGATTTTCATAMTAACTCCAGTATATGGCTCAAACTTTGGAAGATATTTCGGACGTTTCTCCAAAAATTCAAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb854</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1411139</contig_pos>
        <strand>+</strand>
        <context>TWTKTATTTC[A/C]GTTGAATCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATGTATTTC</left_flank>
        <right_flank>GTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAACTTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTCCAAAGGTTCCAAATATAAATTCAAAATTTGATGAAATTTCTCTACGGCCAACGGGAAAATCGATAGCATATGTCAGCGGGGGACAGAGGAAGGGAGGGCACAATGGATGGTGTTTGCGGAATGAGTGGAGGGAAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATGTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTATGAAATATCACTAATTTTAAGGTTTGAATTGTTTATAATTGAAACCGCTTTGTTCCAGGTAATATCAAATCTCGAGTTTGATGAAGACGCTTATCTCAAAAGCTGGGATCGCTGTTTTAAAAGTGGGGGGACATGAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCAGCGCCGCTACCAACTGAGCTACGCGTGCAAAGAAAAAGCCGCTGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCACAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCTTTAATAGAACCTTATATGTTTACTTTGAGCTCAATTAACTCGGTTCCTATGAGAGATATGAAAAATTG</canonical>
            <polymorphic>CAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAACTTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTCCAAAGGTTCCAAATATAAATTCAAAATTTGATGAAATTTCTCTACGGCCAACGGGAAAATCGATAGCATATGTCAGCGGGGGACAGAGGAAGGGAGGGCACAATGGATGGTGTTTGCGGAATGAGTGGAGGGAAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATGTATTTCMGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTATGAAATATCACTAATTTTAAGGTTTGAATTGTTTATAATTGAAACCGCTTTGTTCCAGGTAATATCAAATCTCGAGTTTGATGAAGACGCTTATCTCAAAAGCTGGGATCGCTGTTTTAAAAGTGGGGGGACATGAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCAGCGCCGCTACCAACTGAGCTACGCGTGCAAAGAAAAAGCCGCTGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCACAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCTTTAATAGAACCTTATATGTTTACTTTGAGCTCAATTAACTCGGTTCCTATGAGAGATATGAAAAATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATATGAAAGATGAGCAATGAC</pcr_primer_p1>
		<pcr_primer_p2>GATTTGATATTACCTGGAACAAA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATGTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTATGAAATATCACTAATTTTAAGGTTTGAATTGTTTATAATTGAAACCGCTTTGTTCCAGGTAATATCAAATC</canonical_amplicon>
		<polymorphic_amplicon>AAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATGTATTTCMGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTATGAAATATCACTAATTTTAAGGTTTGAATTGTTTATAATTGAAACCGCTTTGTTCCAGGTAATATCAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb855</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1411132</contig_pos>
        <strand>+</strand>
        <context>CAATCTTTWT[G/T]TATTTCMGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTAT</left_flank>
        <right_flank>TATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATAC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGAACCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAACTTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTCCAAAGGTTCCAAATATAAATTCAAAATTTGATGAAATTTCTCTACGGCCAACGGGAAAATCGATAGCATATGTCAGCGGGGGACAGAGGAAGGGAGGGCACAATGGATGGTGTTTGCGGAATGAGTGGAGGGAAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATGTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTATGAAATATCACTAATTTTAAGGTTTGAATTGTTTATAATTGAAACCGCTTTGTTCCAGGTAATATCAAATCTCGAGTTTGATGAAGACGCTTATCTCAAAAGCTGGGATCGCTGTTTTAAAAGTGGGGGGACATGAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCAGCGCCGCTACCAACTGAGCTACGCGTGCAAAGAAAAAGCCGCTGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCACAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCTTTAATAGAACCTTATATGTTTACTTTGAGCTCAATTAACTCGGTTCCTATGAGAGATATGA</canonical>
            <polymorphic>GGTGAACCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAACTTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTCCAAAGGTTCCAAATATAAATTCAAAATTTGATGAAATTTCTCTACGGCCAACGGGAAAATCGATAGCATATGTCAGCGGGGGACAGAGGAAGGGAGGGCACAATGGATGGTGTTTGCGGAATGAGTGGAGGGAAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATKTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTATGAAATATCACTAATTTTAAGGTTTGAATTGTTTATAATTGAAACCGCTTTGTTCCAGGTAATATCAAATCTCGAGTTTGATGAAGACGCTTATCTCAAAAGCTGGGATCGCTGTTTTAAAAGTGGGGGGACATGAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCAGCGCCGCTACCAACTGAGCTACGCGTGCAAAGAAAAAGCCGCTGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCACAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCTTTAATAGAACCTTATATGTTTACTTTGAGCTCAATTAACTCGGTTCCTATGAGAGATATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATATGAAAGATGAGCAATGAC</pcr_primer_p1>
		<pcr_primer_p2>GATTTGATATTACCTGGAACAAA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATGTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTATGAAATATCACTAATTTTAAGGTTTGAATTGTTTATAATTGAAACCGCTTTGTTCCAGGTAATATCAAATC</canonical_amplicon>
		<polymorphic_amplicon>AAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATKTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTATGAAATATCACTAATTTTAAGGTTTGAATTGTTTATAATTGAAACCGCTTTGTTCCAGGTAATATCAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb856</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1411130</contig_pos>
        <strand>+</strand>
        <context>TTCAATCTTT[A/T]TKTATTTCMG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTT</left_flank>
        <right_flank>TGTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGTGAACCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAACTTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTCCAAAGGTTCCAAATATAAATTCAAAATTTGATGAAATTTCTCTACGGCCAACGGGAAAATCGATAGCATATGTCAGCGGGGGACAGAGGAAGGGAGGGCACAATGGATGGTGTTTGCGGAATGAGTGGAGGGAAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATGTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTATGAAATATCACTAATTTTAAGGTTTGAATTGTTTATAATTGAAACCGCTTTGTTCCAGGTAATATCAAATCTCGAGTTTGATGAAGACGCTTATCTCAAAAGCTGGGATCGCTGTTTTAAAAGTGGGGGGACATGAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCAGCGCCGCTACCAACTGAGCTACGCGTGCAAAGAAAAAGCCGCTGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCACAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCTTTAATAGAACCTTATATGTTTACTTTGAGCTCAATTAACTCGGTTCCTATGAGAGATAT</canonical>
            <polymorphic>TAGGTGAACCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAACTTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTCCAAAGGTTCCAAATATAAATTCAAAATTTGATGAAATTTCTCTACGGCCAACGGGAAAATCGATAGCATATGTCAGCGGGGGACAGAGGAAGGGAGGGCACAATGGATGGTGTTTGCGGAATGAGTGGAGGGAAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTWTGTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTATGAAATATCACTAATTTTAAGGTTTGAATTGTTTATAATTGAAACCGCTTTGTTCCAGGTAATATCAAATCTCGAGTTTGATGAAGACGCTTATCTCAAAAGCTGGGATCGCTGTTTTAAAAGTGGGGGGACATGAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCAGCGCCGCTACCAACTGAGCTACGCGTGCAAAGAAAAAGCCGCTGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCACAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCTTTAATAGAACCTTATATGTTTACTTTGAGCTCAATTAACTCGGTTCCTATGAGAGATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATATGAAAGATGAGCAATGAC</pcr_primer_p1>
		<pcr_primer_p2>GATTTGATATTACCTGGAACAAA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATGTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTATGAAATATCACTAATTTTAAGGTTTGAATTGTTTATAATTGAAACCGCTTTGTTCCAGGTAATATCAAATC</canonical_amplicon>
		<polymorphic_amplicon>AAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTWTGTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTATGAAATATCACTAATTTTAAGGTTTGAATTGTTTATAATTGAAACCGCTTTGTTCCAGGTAATATCAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb857</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1411063</contig_pos>
        <strand></strand>
        <context>AAGTGGGCTG[G/A]GGTAATTGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTG</left_flank>
        <right_flank>GGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAAAAACCAAAAATTGGTATGAAGTTCTTACCAATTGTCTTACCGATTGGCGAGAAATTTCTTCTGTAGGTGAACCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAACTTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTCCAAAGGTTCCAAATATAAATTCAAAATTTGATGAAATTTCTCTACGGCCAACGGGAAAATCGATAGCATATGTCAGCGGGGGACAGAGGAAGGGAGGGCACAATGGATGGTGTTTGCGGAATGAGTGGAGGGAAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATGTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTATGAAATATCACTAATTTTAAGGTTTGAATTGTTTATAATTGAAACCGCTTTGTTCCAGGTAATATCAAATCTCGAGTTTGATGAAGACGCTTATCTCAAAAGCTGGGATCGCTGTTTTAAAAGTGGGGGGACATGAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCAGCGCCGCTACCAACTGAGCTACGCGTGCAAAGAAAAAGCCGCTGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCACAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCT</canonical>
            <polymorphic>GCAAAAACCAAAAATTGGTATGAAGTTCTTACCAATTGTCTTACCGATTGGCGAGAAATTTCTTCTGTAGGTGAACCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAACTTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTCCAAAGGTTCCAAATATAAATTCAAAATTTGATGAAATTTCTCTACGGCCAACGGGAAAATCGATAGCATATGTCAGCGGGGGACAGAGGAAGGGAGGGCACAATGGATGGTGTTTGCGGAATGAGTGGAGGGAAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTGRGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATGTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTATGAAATATCACTAATTTTAAGGTTTGAATTGTTTATAATTGAAACCGCTTTGTTCCAGGTAATATCAAATCTCGAGTTTGATGAAGACGCTTATCTCAAAAGCTGGGATCGCTGTTTTAAAAGTGGGGGGACATGAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCAGCGCCGCTACCAACTGAGCTACGCGTGCAAAGAAAAAGCCGCTGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCACAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATATGAAAGATGAGCAATGAC</pcr_primer_p1>
		<pcr_primer_p2>GATTTGATATTACCTGGAACAAA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATGTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTATGAAATATCACTAATTTTAAGGTTTGAATTGTTTATAATTGAAACCGCTTTGTTCCAGGTAATATCAAATC</canonical_amplicon>
		<polymorphic_amplicon>AAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTGRGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATGTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTATGAAATATCACTAATTTTAAGGTTTGAATTGTTTATAATTGAAACCGCTTTGTTCCAGGTAATATCAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb858</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1411044</contig_pos>
        <strand></strand>
        <context>GGGGGGGGGG[G/A]CAATAGATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGAGTGGAGGGAAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGG</left_flank>
        <right_flank>CAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTGGTCCGGTGCCGCCTGCAAAAACCAAAAATTGGTATGAAGTTCTTACCAATTGTCTTACCGATTGGCGAGAAATTTCTTCTGTAGGTGAACCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAACTTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTCCAAAGGTTCCAAATATAAATTCAAAATTTGATGAAATTTCTCTACGGCCAACGGGAAAATCGATAGCATATGTCAGCGGGGGACAGAGGAAGGGAGGGCACAATGGATGGTGTTTGCGGAATGAGTGGAGGGAAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATGTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTATGAAATATCACTAATTTTAAGGTTTGAATTGTTTATAATTGAAACCGCTTTGTTCCAGGTAATATCAAATCTCGAGTTTGATGAAGACGCTTATCTCAAAAGCTGGGATCGCTGTTTTAAAAGTGGGGGGACATGAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCAGCGCCGCTACCAACTGAGCTACGCGTGCAAAGAAAAAGCCGCTGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCACAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAA</canonical>
            <polymorphic>ACTTGGTCCGGTGCCGCCTGCAAAAACCAAAAATTGGTATGAAGTTCTTACCAATTGTCTTACCGATTGGCGAGAAATTTCTTCTGTAGGTGAACCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAACTTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTCCAAAGGTTCCAAATATAAATTCAAAATTTGATGAAATTTCTCTACGGCCAACGGGAAAATCGATAGCATATGTCAGCGGGGGACAGAGGAAGGGAGGGCACAATGGATGGTGTTTGCGGAATGAGTGGAGGGAAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGRCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATGTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTATGAAATATCACTAATTTTAAGGTTTGAATTGTTTATAATTGAAACCGCTTTGTTCCAGGTAATATCAAATCTCGAGTTTGATGAAGACGCTTATCTCAAAAGCTGGGATCGCTGTTTTAAAAGTGGGGGGACATGAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCAGCGCCGCTACCAACTGAGCTACGCGTGCAAAGAAAAAGCCGCTGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCACAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATGAGTGGAGGGAAATATG</pcr_primer_p1>
		<pcr_primer_p2>AAGCGGTTTCAATTATAAACAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAATGAGTGGAGGGAAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATGTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTATGAAATATCACTAATTTTAAGGTTTGAATTGTTTATAATTGAAACCGCTT</canonical_amplicon>
		<polymorphic_amplicon>GAATGAGTGGAGGGAAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGRCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATGTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTATGAAATATCACTAATTTTAAGGTTTGAATTGTTTATAATTGAAACCGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb859</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1411030</contig_pos>
        <strand>+</strand>
        <context>GCAATGACGG[A/G]CRGGGGGGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGTGTTTGCGGAATGAGTGGAGGGAAATATGAAAGATGAGCAATGACGG</left_flank>
        <right_flank>CGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATATTGATCGGTACTTGGTCCGGTGCCGCCTGCAAAAACCAAAAATTGGTATGAAGTTCTTACCAATTGTCTTACCGATTGGCGAGAAATTTCTTCTGTAGGTGAACCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAACTTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTCCAAAGGTTCCAAATATAAATTCAAAATTTGATGAAATTTCTCTACGGCCAACGGGAAAATCGATAGCATATGTCAGCGGGGGACAGAGGAAGGGAGGGCACAATGGATGGTGTTTGCGGAATGAGTGGAGGGAAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATGTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTATGAAATATCACTAATTTTAAGGTTTGAATTGTTTATAATTGAAACCGCTTTGTTCCAGGTAATATCAAATCTCGAGTTTGATGAAGACGCTTATCTCAAAAGCTGGGATCGCTGTTTTAAAAGTGGGGGGACATGAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCAGCGCCGCTACCAACTGAGCTACGCGTGCAAAGAAAAAGCCGCTGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCACAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATA</canonical>
            <polymorphic>CAATATTGATCGGTACTTGGTCCGGTGCCGCCTGCAAAAACCAAAAATTGGTATGAAGTTCTTACCAATTGTCTTACCGATTGGCGAGAAATTTCTTCTGTAGGTGAACCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAACTTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTCCAAAGGTTCCAAATATAAATTCAAAATTTGATGAAATTTCTCTACGGCCAACGGGAAAATCGATAGCATATGTCAGCGGGGGACAGAGGAAGGGAGGGCACAATGGATGGTGTTTGCGGAATGAGTGGAGGGAAATATGAAAGATGAGCAATGACGGRCGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATGTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTATGAAATATCACTAATTTTAAGGTTTGAATTGTTTATAATTGAAACCGCTTTGTTCCAGGTAATATCAAATCTCGAGTTTGATGAAGACGCTTATCTCAAAAGCTGGGATCGCTGTTTTAAAAGTGGGGGGACATGAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCAGCGCCGCTACCAACTGAGCTACGCGTGCAAAGAAAAAGCCGCTGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCACAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTTCTCCACTCTTTAGTTCC</pcr_primer_p1>
		<pcr_primer_p2>TATTCCTCATTTGCAAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GAACTTCTCCACTCTTTAGTTCCAAAGGTTCCAAATATAAATTCAAAATTTGATGAAATTTCTCTACGGCCAACGGGAAAATCGATAGCATATGTCAGCGGGGGACAGAGGAAGGGAGGGCACAATGGATGGTGTTTGCGGAATGAGTGGAGGGAAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATA</canonical_amplicon>
		<polymorphic_amplicon>GAACTTCTCCACTCTTTAGTTCCAAAGGTTCCAAATATAAATTCAAAATTTGATGAAATTTCTCTACGGCCAACGGGAAAATCGATAGCATATGTCAGCGGGGGACAGAGGAAGGGAGGGCACAATGGATGGTGTTTGCGGAATGAGTGGAGGGAAATATGAAAGATGAGCAATGACGGRCGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb860</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1410819</contig_pos>
        <strand>+</strand>
        <context>GTTCCGAAGT[C/T]AGCGACGTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGT</left_flank>
        <right_flank>AGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACAAACTTTTCATATCTTTGATAGGAAAAAAGTAACACTTACCAATCTGATGAATGGAGTACAACGCATCCTTTTCATCAAAGAACATTTGTAGAATCTTCTCATAAACGTCAGACGTCTTCTCAATATCCCACTCAAAGTGTCTTCCAATGTGACGACGTAGCAAGACCTCTCCCAATAGCATCTGAGCACATCGGAGCATACATCCCCAATATTGATCGGTACTTGGTCCGGTGCCGCCTGCAAAAACCAAAAATTGGTATGAAGTTCTTACCAATTGTCTTACCGATTGGCGAGAAATTTCTTCTGTAGGTGAACCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAACTTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTCCAAAGGTTCCAAATATAAATTCAAAATTTGATGAAATTTCTCTACGGCCAACGGGAAAATCGATAGCATATGTCAGCGGGGGACAGAGGAAGGGAGGGCACAATGGATGGTGTTTGCGGAATGAGTGGAGGGAAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATGTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTATGAAATATCACTAATTTTAAGGTTTGAATTGTTTATAATTGAAACCGCTTTGTTCCAGGTAATATCAAATCTCGAGTTTGATGAAGACGCTTATCTCAAAAGCTGGGATCGCTGTTTTAAAAGTGGGGGG</canonical>
            <polymorphic>TGACAAACTTTTCATATCTTTGATAGGAAAAAAGTAACACTTACCAATCTGATGAATGGAGTACAACGCATCCTTTTCATCAAAGAACATTTGTAGAATCTTCTCATAAACGTCAGACGTCTTCTCAATATCCCACTCAAAGTGTCTTCCAATGTGACGACGTAGCAAGACCTCTCCCAATAGCATCTGAGCACATCGGAGCATACATCCCCAATATTGATCGGTACTTGGTCCGGTGCCGCCTGCAAAAACCAAAAATTGGTATGAAGTTCTTACCAATTGTCTTACCGATTGGCGAGAAATTTCTTCTGTAGGTGAACCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAACTTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTYAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTCCAAAGGTTCCAAATATAAATTCAAAATTTGATGAAATTTCTCTACGGCCAACGGGAAAATCGATAGCATATGTCAGCGGGGGACAGAGGAAGGGAGGGCACAATGGATGGTGTTTGCGGAATGAGTGGAGGGAAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATGTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTATGAAATATCACTAATTTTAAGGTTTGAATTGTTTATAATTGAAACCGCTTTGTTCCAGGTAATATCAAATCTCGAGTTTGATGAAGACGCTTATCTCAAAAGCTGGGATCGCTGTTTTAAAAGTGGGGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGAATCGAGAAGTCATGTAT</pcr_primer_p1>
		<pcr_primer_p2>ATATTTGGAACCTTTGGAACTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAACTTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTCCAAAGGTTCCAAATAT</canonical_amplicon>
		<polymorphic_amplicon>CCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAACTTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTYAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTCCAAAGGTTCCAAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb861</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1410700</contig_pos>
        <strand>+</strand>
        <context>TTGGAAYTTT[C/T]GAAAAATACC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAACTTT</left_flank>
        <right_flank>GAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATAGAAGGGCACCCATACTGTCAAGTTTGAGCTCAATTATCTCGATTCCCGGGAAAGATACCAAAAATGTGAAAACTGACAAAACGTTTATGAATTTATGATAAACAATTTATCAGTTGACAAACTTTTCATATCTTTGATAGGAAAAAAGTAACACTTACCAATCTGATGAATGGAGTACAACGCATCCTTTTCATCAAAGAACATTTGTAGAATCTTCTCATAAACGTCAGACGTCTTCTCAATATCCCACTCAAAGTGTCTTCCAATGTGACGACGTAGCAAGACCTCTCCCAATAGCATCTGAGCACATCGGAGCATACATCCCCAATATTGATCGGTACTTGGTCCGGTGCCGCCTGCAAAAACCAAAAATTGGTATGAAGTTCTTACCAATTGTCTTACCGATTGGCGAGAAATTTCTTCTGTAGGTGAACCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAACTTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTCCAAAGGTTCCAAATATAAATTCAAAATTTGATGAAATTTCTCTACGGCCAACGGGAAAATCGATAGCATATGTCAGCGGGGGACAGAGGAAGGGAGGGCACAATGGATGGTGTTTGCGGAATGAGTGGAGGGAAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATGTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTATGAAATATCAC</canonical>
            <polymorphic>TAATAGAAGGGCACCCATACTGTCAAGTTTGAGCTCAATTATCTCGATTCCCGGGAAAGATACCAAAAATGTGAAAACTGACAAAACGTTTATGAATTTATGATAAACAATTTATCAGTTGACAAACTTTTCATATCTTTGATAGGAAAAAAGTAACACTTACCAATCTGATGAATGGAGTACAACGCATCCTTTTCATCAAAGAACATTTGTAGAATCTTCTCATAAACGTCAGACGTCTTCTCAATATCCCACTCAAAGTGTCTTCCAATGTGACGACGTAGCAAGACCTCTCCCAATAGCATCTGAGCACATCGGAGCATACATCCCCAATATTGATCGGTACTTGGTCCGGTGCCGCCTGCAAAAACCAAAAATTGGTATGAAGTTCTTACCAATTGTCTTACCGATTGGCGAGAAATTTCTTCTGTAGGTGAACCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAACTTTYGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTCCAAAGGTTCCAAATATAAATTCAAAATTTGATGAAATTTCTCTACGGCCAACGGGAAAATCGATAGCATATGTCAGCGGGGGACAGAGGAAGGGAGGGCACAATGGATGGTGTTTGCGGAATGAGTGGAGGGAAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATGTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTATGAAATATCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTCTGTAGGTGAACCAGAAT</pcr_primer_p1>
		<pcr_primer_p2>GAACTAAAGAGTGGAGAAGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTTCTGTAGGTGAACCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAACTTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTC</canonical_amplicon>
		<polymorphic_amplicon>TCTTCTGTAGGTGAACCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAACTTTYGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb862</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1410696</contig_pos>
        <strand>+</strand>
        <context>AAATTTGGAA[C/T]TTTYGAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAA</left_flank>
        <right_flank>TTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGTAATAGAAGGGCACCCATACTGTCAAGTTTGAGCTCAATTATCTCGATTCCCGGGAAAGATACCAAAAATGTGAAAACTGACAAAACGTTTATGAATTTATGATAAACAATTTATCAGTTGACAAACTTTTCATATCTTTGATAGGAAAAAAGTAACACTTACCAATCTGATGAATGGAGTACAACGCATCCTTTTCATCAAAGAACATTTGTAGAATCTTCTCATAAACGTCAGACGTCTTCTCAATATCCCACTCAAAGTGTCTTCCAATGTGACGACGTAGCAAGACCTCTCCCAATAGCATCTGAGCACATCGGAGCATACATCCCCAATATTGATCGGTACTTGGTCCGGTGCCGCCTGCAAAAACCAAAAATTGGTATGAAGTTCTTACCAATTGTCTTACCGATTGGCGAGAAATTTCTTCTGTAGGTGAACCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAACTTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTCCAAAGGTTCCAAATATAAATTCAAAATTTGATGAAATTTCTCTACGGCCAACGGGAAAATCGATAGCATATGTCAGCGGGGGACAGAGGAAGGGAGGGCACAATGGATGGTGTTTGCGGAATGAGTGGAGGGAAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATGTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTATGAAATA</canonical>
            <polymorphic>CCTGTAATAGAAGGGCACCCATACTGTCAAGTTTGAGCTCAATTATCTCGATTCCCGGGAAAGATACCAAAAATGTGAAAACTGACAAAACGTTTATGAATTTATGATAAACAATTTATCAGTTGACAAACTTTTCATATCTTTGATAGGAAAAAAGTAACACTTACCAATCTGATGAATGGAGTACAACGCATCCTTTTCATCAAAGAACATTTGTAGAATCTTCTCATAAACGTCAGACGTCTTCTCAATATCCCACTCAAAGTGTCTTCCAATGTGACGACGTAGCAAGACCTCTCCCAATAGCATCTGAGCACATCGGAGCATACATCCCCAATATTGATCGGTACTTGGTCCGGTGCCGCCTGCAAAAACCAAAAATTGGTATGAAGTTCTTACCAATTGTCTTACCGATTGGCGAGAAATTTCTTCTGTAGGTGAACCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAAYTTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTCCAAAGGTTCCAAATATAAATTCAAAATTTGATGAAATTTCTCTACGGCCAACGGGAAAATCGATAGCATATGTCAGCGGGGGACAGAGGAAGGGAGGGCACAATGGATGGTGTTTGCGGAATGAGTGGAGGGAAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATGTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTATGAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTCTGTAGGTGAACCAGAAT</pcr_primer_p1>
		<pcr_primer_p2>GAACTAAAGAGTGGAGAAGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTTCTGTAGGTGAACCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAACTTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTC</canonical_amplicon>
		<polymorphic_amplicon>TCTTCTGTAGGTGAACCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAAYTTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb863</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1410675</contig_pos>
        <strand>+</strand>
        <context>TCATTGCGTC[A/G]ATACCTGAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTCTGTAGGTGAACCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTC</left_flank>
        <right_flank>ATACCTGAAGAAATTTGGAACTTTTGAAAAATACCAAAAACCGACTCACC</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGTTGGAAACCTTAGAAAACCTGTAATAGAAGGGCACCCATACTGTCAAGTTTGAGCTCAATTATCTCGATTCCCGGGAAAGATACCAAAAATGTGAAAACTGACAAAACGTTTATGAATTTATGATAAACAATTTATCAGTTGACAAACTTTTCATATCTTTGATAGGAAAAAAGTAACACTTACCAATCTGATGAATGGAGTACAACGCATCCTTTTCATCAAAGAACATTTGTAGAATCTTCTCATAAACGTCAGACGTCTTCTCAATATCCCACTCAAAGTGTCTTCCAATGTGACGACGTAGCAAGACCTCTCCCAATAGCATCTGAGCACATCGGAGCATACATCCCCAATATTGATCGGTACTTGGTCCGGTGCCGCCTGCAAAAACCAAAAATTGGTATGAAGTTCTTACCAATTGTCTTACCGATTGGCGAGAAATTTCTTCTGTAGGTGAACCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAACTTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTCCAAAGGTTCCAAATATAAATTCAAAATTTGATGAAATTTCTCTACGGCCAACGGGAAAATCGATAGCATATGTCAGCGGGGGACAGAGGAAGGGAGGGCACAATGGATGGTGTTTGCGGAATGAGTGGAGGGAAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATGTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAA</canonical>
            <polymorphic>ATCGTTGGAAACCTTAGAAAACCTGTAATAGAAGGGCACCCATACTGTCAAGTTTGAGCTCAATTATCTCGATTCCCGGGAAAGATACCAAAAATGTGAAAACTGACAAAACGTTTATGAATTTATGATAAACAATTTATCAGTTGACAAACTTTTCATATCTTTGATAGGAAAAAAGTAACACTTACCAATCTGATGAATGGAGTACAACGCATCCTTTTCATCAAAGAACATTTGTAGAATCTTCTCATAAACGTCAGACGTCTTCTCAATATCCCACTCAAAGTGTCTTCCAATGTGACGACGTAGCAAGACCTCTCCCAATAGCATCTGAGCACATCGGAGCATACATCCCCAATATTGATCGGTACTTGGTCCGGTGCCGCCTGCAAAAACCAAAAATTGGTATGAAGTTCTTACCAATTGTCTTACCGATTGGCGAGAAATTTCTTCTGTAGGTGAACCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCRATACCTGAAGAAATTTGGAACTTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTCCAAAGGTTCCAAATATAAATTCAAAATTTGATGAAATTTCTCTACGGCCAACGGGAAAATCGATAGCATATGTCAGCGGGGGACAGAGGAAGGGAGGGCACAATGGATGGTGTTTGCGGAATGAGTGGAGGGAAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATGTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTCTGTAGGTGAACCAGAAT</pcr_primer_p1>
		<pcr_primer_p2>GAACTAAAGAGTGGAGAAGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTTCTGTAGGTGAACCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAACTTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTC</canonical_amplicon>
		<polymorphic_amplicon>TCTTCTGTAGGTGAACCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCRATACCTGAAGAAATTTGGAACTTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb940</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1425162</contig_pos>
        <strand>+</strand>
        <context>AAAAAAGAAG[A/T]CGTCCATTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTTACCCATTATCGAAAAACGTCCTTTTTACTCAACTTCAAAAAAGAAG</left_flank>
        <right_flank>CGTCCATTAAAAATCGGGACACACTACTCGGGAGGAAGGCAATAAAACCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACCCGGGTTTTTCTGATAGTCGTTTTTTAATATGCTTGAAAACTGTAAATTTGTAATAAATTCTTTTTTTCAGAATTTGGATTATCACTAAAATTGCCTCTAAATGATTTAAAATGTTGTACGTCTTCGATATTATCGAAGTGAAGCCTCCATTTCGGTTGGTCGAAAATCGCCGACCGACCCAGCCGACCGTTTTCGTGCCTTTGCGCATTAAAATACCTATATTTGCGTACAAGCGCTTTATTTTAACGACAAACGAGGCATTTAGTGAGTGGTTTGTCGTAAAATACAATGTTTCGTACGCAAACACTCACTGGCATGTTGACGCACAAATGCACGAAAACGGTCGGCGCGCCGACCGATCGGTCAGCTCGGTCGGTCGGTCGGCTGAATTTGCCGACCGAATGGAGGCCTTATTTCGAAGTTCAATTATTTTTTCATGTCTTCAAGTTACCCATTATCGAAAAACGTCCTTTTTACTCAACTTCAAAAAAGAAGACGTCCATTAAAAATCGGGACACACTACTCGGGAGGAAGGCAATAAAACCGGAAAAGAGGTCTCAAGTTTTCTATCTCAAGAAAATTGGGGAAAAAAAAGAGAGAAATCGAAGAACACAAACACACTCATCCTCTCAGTTTTTTCCTCTTTCTCTCTATTTTGTCTTTTGACCAAATTGCTTTGGATTGGGAGAGAAGAAGATTGGATTTTGTTTTTTTTTACTTCTTTCTTTTTGCTTTCTACTTGGGGGAAACTGGCTGACTAAGTAGGTGGGAGTTTTTTTAGGAAATAGAAAAATGATGGTTTTTTGGCTTCTTTTTCAGTCATTTTTCGATAAAAAATGACCTAGTTGTTTTATGGTTTCGGGAAGATTCGGAACTGGACTTCTAAAAAATAACATGAATTTTCGGAAAATTCGAATTTTAAAATACCAGCTTGAAACGTTCAACTGACGCGCCTCCGCCGCGTTCTTCTCTCCTCGCTTGTTACTTTTTTGGTAT</canonical>
            <polymorphic>CACCCGGGTTTTTCTGATAGTCGTTTTTTAATATGCTTGAAAACTGTAAATTTGTAATAAATTCTTTTTTTCAGAATTTGGATTATCACTAAAATTGCCTCTAAATGATTTAAAATGTTGTACGTCTTCGATATTATCGAAGTGAAGCCTCCATTTCGGTTGGTCGAAAATCGCCGACCGACCCAGCCGACCGTTTTCGTGCCTTTGCGCATTAAAATACCTATATTTGCGTACAAGCGCTTTATTTTAACGACAAACGAGGCATTTAGTGAGTGGTTTGTCGTAAAATACAATGTTTCGTACGCAAACACTCACTGGCATGTTGACGCACAAATGCACGAAAACGGTCGGCGCGCCGACCGATCGGTCAGCTCGGTCGGTCGGTCGGCTGAATTTGCCGACCGAATGGAGGCCTTATTTCGAAGTTCAATTATTTTTTCATGTCTTCAAGTTACCCATTATCGAAAAACGTCCTTTTTACTCAACTTCAAAAAAGAAGWCGTCCATTAAAAATCGGGACACACTACTCGGGAGGAAGGCAATAAAACCGGAAAAGAGGTCTCAAGTTTTCTATCTCAAGAAAATTGGGGAAAAAAAAGAGAGAAATCGAAGAACACAAACACACTCATCCTCTCAGTTTTTTCCTCTTTCTCTCTATTTTGTCTTTTGACCAAATTGCTTTGGATTGGGAGAGAAGAAGATTGGATTTTGTTTTTTTTTACTTCTTTCTTTTTGCTTTCTACTTGGGGGAAACTGGCTGACTAAGTAGGTGGGAGTTTTTTTAGGAAATAGAAAAATGATGGTTTTTTGGCTTCTTTTTCAGTCATTTTTCGATAAAAAATGACCTAGTTGTTTTATGGTTTCGGGAAGATTCGGAACTGGACTTCTAAAAAATAACATGAATTTTCGGAAAATTCGAATTTTAAAATACCAGCTTGAAACGTTCAACTGACGCGCCTCCGCCGCGTTCTTCTCTCCTCGCTTGTTACTTTTTTGGTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACGTC</site>
                <isoschizomers>
                    <enzyme>AatII</enzyme>
                    <enzyme>ZraI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>441 347 122 59 31</canonical_bands>
                <polymorphic_bands>472 347 122 59</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGTCTTCAAGTTACCCATTAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGGTCAAAAGACAAAATAGAG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>CATGTCTTCAAGTTACCCATTATCGAAAAACGTCCTTTTTACTCAACTTCAAAAAAGAAGACGTCCATTAAAAATCGGGACACACTACTCGGGAGGAAGGCAATAAAACCGGAAAAGAGGTCTCAAGTTTTCTATCTCAAGAAAATTGGGGAAAAAAAAGAGAGAAATCGAAGAACACAAACACACTCATCCTCTCAGTTTTTTCCTCTTTCTCTCTATTTTGTCTTTTGACCAAA</canonical_amplicon>
		<polymorphic_amplicon>CATGTCTTCAAGTTACCCATTATCGAAAAACGTCCTTTTTACTCAACTTCAAAAAAGAAGWCGTCCATTAAAAATCGGGACACACTACTCGGGAGGAAGGCAATAAAACCGGAAAAGAGGTCTCAAGTTTTCTATCTCAAGAAAATTGGGGAAAAAAAAGAGAGAAATCGAAGAACACAAACACACTCATCCTCTCAGTTTTTTCCTCTTTCTCTCTATTTTGTCTTTTGACCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb941</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1425234</contig_pos>
        <strand>+</strand>
        <context>TCAAGTTTTC[C/T]ATCTCAAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACTACTCGGGAGGAAGGCAATAAAACCGGAAAAGAGGTCTCAAGTTTTC</left_flank>
        <right_flank>ATCTCAAGAAAATTGGGGAAAAAAAAGAGAGAAATCGAAGAACACAAACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATTTGGATTATCACTAAAATTGCCTCTAAATGATTTAAAATGTTGTACGTCTTCGATATTATCGAAGTGAAGCCTCCATTTCGGTTGGTCGAAAATCGCCGACCGACCCAGCCGACCGTTTTCGTGCCTTTGCGCATTAAAATACCTATATTTGCGTACAAGCGCTTTATTTTAACGACAAACGAGGCATTTAGTGAGTGGTTTGTCGTAAAATACAATGTTTCGTACGCAAACACTCACTGGCATGTTGACGCACAAATGCACGAAAACGGTCGGCGCGCCGACCGATCGGTCAGCTCGGTCGGTCGGTCGGCTGAATTTGCCGACCGAATGGAGGCCTTATTTCGAAGTTCAATTATTTTTTCATGTCTTCAAGTTACCCATTATCGAAAAACGTCCTTTTTACTCAACTTCAAAAAAGAAGACGTCCATTAAAAATCGGGACACACTACTCGGGAGGAAGGCAATAAAACCGGAAAAGAGGTCTCAAGTTTTCTATCTCAAGAAAATTGGGGAAAAAAAAGAGAGAAATCGAAGAACACAAACACACTCATCCTCTCAGTTTTTTCCTCTTTCTCTCTATTTTGTCTTTTGACCAAATTGCTTTGGATTGGGAGAGAAGAAGATTGGATTTTGTTTTTTTTTACTTCTTTCTTTTTGCTTTCTACTTGGGGGAAACTGGCTGACTAAGTAGGTGGGAGTTTTTTTAGGAAATAGAAAAATGATGGTTTTTTGGCTTCTTTTTCAGTCATTTTTCGATAAAAAATGACCTAGTTGTTTTATGGTTTCGGGAAGATTCGGAACTGGACTTCTAAAAAATAACATGAATTTTCGGAAAATTCGAATTTTAAAATACCAGCTTGAAACGTTCAACTGACGCGCCTCCGCCGCGTTCTTCTCTCCTCGCTTGTTACTTTTTTGGTATTAAATTTGATCTCCACAAATTTTACGGTAGATCAAATTTGGTCTGACAGATTTTTCATCTGGGAAAATGGAA</canonical>
            <polymorphic>AGAATTTGGATTATCACTAAAATTGCCTCTAAATGATTTAAAATGTTGTACGTCTTCGATATTATCGAAGTGAAGCCTCCATTTCGGTTGGTCGAAAATCGCCGACCGACCCAGCCGACCGTTTTCGTGCCTTTGCGCATTAAAATACCTATATTTGCGTACAAGCGCTTTATTTTAACGACAAACGAGGCATTTAGTGAGTGGTTTGTCGTAAAATACAATGTTTCGTACGCAAACACTCACTGGCATGTTGACGCACAAATGCACGAAAACGGTCGGCGCGCCGACCGATCGGTCAGCTCGGTCGGTCGGTCGGCTGAATTTGCCGACCGAATGGAGGCCTTATTTCGAAGTTCAATTATTTTTTCATGTCTTCAAGTTACCCATTATCGAAAAACGTCCTTTTTACTCAACTTCAAAAAAGAAGACGTCCATTAAAAATCGGGACACACTACTCGGGAGGAAGGCAATAAAACCGGAAAAGAGGTCTCAAGTTTTCYATCTCAAGAAAATTGGGGAAAAAAAAGAGAGAAATCGAAGAACACAAACACACTCATCCTCTCAGTTTTTTCCTCTTTCTCTCTATTTTGTCTTTTGACCAAATTGCTTTGGATTGGGAGAGAAGAAGATTGGATTTTGTTTTTTTTTACTTCTTTCTTTTTGCTTTCTACTTGGGGGAAACTGGCTGACTAAGTAGGTGGGAGTTTTTTTAGGAAATAGAAAAATGATGGTTTTTTGGCTTCTTTTTCAGTCATTTTTCGATAAAAAATGACCTAGTTGTTTTATGGTTTCGGGAAGATTCGGAACTGGACTTCTAAAAAATAACATGAATTTTCGGAAAATTCGAATTTTAAAATACCAGCTTGAAACGTTCAACTGACGCGCCTCCGCCGCGTTCTTCTCTCCTCGCTTGTTACTTTTTTGGTATTAAATTTGATCTCCACAAATTTTACGGTAGATCAAATTTGGTCTGACAGATTTTTCATCTGGGAAAATGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACGTCCTTTTTACTCAACTT</pcr_primer_p1>
		<pcr_primer_p2>AACAAAATCCAATCTTCTTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAACGTCCTTTTTACTCAACTTCAAAAAAGAAGACGTCCATTAAAAATCGGGACACACTACTCGGGAGGAAGGCAATAAAACCGGAAAAGAGGTCTCAAGTTTTCTATCTCAAGAAAATTGGGGAAAAAAAAGAGAGAAATCGAAGAACACAAACACACTCATCCTCTCAGTTTTTTCCTCTTTCTCTCTATTTTGTCTTTTGACCAAATTGCTTTGGATTGGGAGAGAAGAAGATTGGATTTTGTT</canonical_amplicon>
		<polymorphic_amplicon>AAAACGTCCTTTTTACTCAACTTCAAAAAAGAAGACGTCCATTAAAAATCGGGACACACTACTCGGGAGGAAGGCAATAAAACCGGAAAAGAGGTCTCAAGTTTTCYATCTCAAGAAAATTGGGGAAAAAAAAGAGAGAAATCGAAGAACACAAACACACTCATCCTCTCAGTTTTTTCCTCTTTCTCTCTATTTTGTCTTTTGACCAAATTGCTTTGGATTGGGAGAGAAGAAGATTGGATTTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb942</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1428292</contig_pos>
        <strand>+</strand>
        <context>TGGGTCTTCT[C/T]TAACGGCAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTTAATATCAATCCTTTGGGCATTTATGAATCGGGAAAATGGGTCTTCT</left_flank>
        <right_flank>TAACGGCAGCAACTTCTGTGACATGTTCGTCATCTTCATCACATCGATCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAATGATTAAAAAGTCTTTATATTGAAACAAGCAACAAAGCAGCACAAATTTATATTGAAAACTGGGAACAACAAAAGAAGGAGTGGTTAACATTCTTGACCCCCATAACCCATTAGTCGAAGGTTTTGTTGTAAAAATAAAAACTTTGAAAAATCATCAGAGTTCAATAGTTTTCTGTTATCATTCAATCCAGCAAGATCAGTAGAAGACAGGTTCTCAGTTGCAGCACCCATTGCTGGGGCATTCAAATAGTTCAAATGGAATCGATGAAGAATGGGATAGGCTTCTTTACTGGCTGATCTTGCCCACCATTCGATCGGATTTTCATTCATATTCGTTCCATCCAAAAACCATTTTTGCAACTCCTTAAAATATCAGAATTATCGTTTTCCAAAGAAATAGGTTAACTGACAAGGAGTATTTGCTCTTTTCGATTGCCTCTTGTCCTGTTAATATCAATCCTTTGGGCATTTATGAATCGGGAAAATGGGTCTTCTTTAACGGCAGCAACTTCTGTGACATGTTCGTCATCTTCATCACATCGATCTAGAAGAAATTGAGAGAACTTATTTTTCCATTCATCCTCGGCGAAACAATCCTGAAATTTTCCAATTTCATAGCTACACAGCATGATAAGTTACCGTAAAACCTCTATTAGAACGGCCCTAGTTACCATAAAATCTCTAATGGAAGGACTTGGAAATATAGTTGGGGGCCGCCTAATTTTTAAGTAAAAATTTTTCGAAAAAAAAAGATAGGTAGAATAGAAGGGTCCCTGAAATTGAAGGGCCCCCTCTAATAGAAGGAACCTTCTAATACCGTTTAACAGTTCAAAAAAGCGTCTTTCAAACCTTAAACCGAACGTCGAGCATCATCCCAAACTGAAGAAACTCATTTGACTCATATTGCTTCAACTCCACTTCAATCTGTTTTACAATCGGTTCGGAAACATTTGGATTCTCCTTCATATCGTGTAATTCTCGTATCAAAACCTTACA</canonical>
            <polymorphic>GGAATGATTAAAAAGTCTTTATATTGAAACAAGCAACAAAGCAGCACAAATTTATATTGAAAACTGGGAACAACAAAAGAAGGAGTGGTTAACATTCTTGACCCCCATAACCCATTAGTCGAAGGTTTTGTTGTAAAAATAAAAACTTTGAAAAATCATCAGAGTTCAATAGTTTTCTGTTATCATTCAATCCAGCAAGATCAGTAGAAGACAGGTTCTCAGTTGCAGCACCCATTGCTGGGGCATTCAAATAGTTCAAATGGAATCGATGAAGAATGGGATAGGCTTCTTTACTGGCTGATCTTGCCCACCATTCGATCGGATTTTCATTCATATTCGTTCCATCCAAAAACCATTTTTGCAACTCCTTAAAATATCAGAATTATCGTTTTCCAAAGAAATAGGTTAACTGACAAGGAGTATTTGCTCTTTTCGATTGCCTCTTGTCCTGTTAATATCAATCCTTTGGGCATTTATGAATCGGGAAAATGGGTCTTCTYTAACGGCAGCAACTTCTGTGACATGTTCGTCATCTTCATCACATCGATCTAGAAGAAATTGAGAGAACTTATTTTTCCATTCATCCTCGGCGAAACAATCCTGAAATTTTCCAATTTCATAGCTACACAGCATGATAAGTTACCGTAAAACCTCTATTAGAACGGCCCTAGTTACCATAAAATCTCTAATGGAAGGACTTGGAAATATAGTTGGGGGCCGCCTAATTTTTAAGTAAAAATTTTTCGAAAAAAAAAGATAGGTAGAATAGAAGGGTCCCTGAAATTGAAGGGCCCCCTCTAATAGAAGGAACCTTCTAATACCGTTTAACAGTTCAAAAAAGCGTCTTTCAAACCTTAAACCGAACGTCGAGCATCATCCCAAACTGAAGAAACTCATTTGACTCATATTGCTTCAACTCCACTTCAATCTGTTTTACAATCGGTTCGGAAACATTTGGATTCTCCTTCATATCGTGTAATTCTCGTATCAAAACCTTACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>280 229 145 96 81 48 46 37 30 8</canonical_bands>
                <polymorphic_bands>280 277 145 96 81 46 37 30 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAAGAAATAGGTTAACTGACA</pcr_primer_p1>
		<pcr_primer_p2>GGTAACTTATCATGCTGTGTAGC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CCAAAGAAATAGGTTAACTGACAAGGAGTATTTGCTCTTTTCGATTGCCTCTTGTCCTGTTAATATCAATCCTTTGGGCATTTATGAATCGGGAAAATGGGTCTTCTTTAACGGCAGCAACTTCTGTGACATGTTCGTCATCTTCATCACATCGATCTAGAAGAAATTGAGAGAACTTATTTTTCCATTCATCCTCGGCGAAACAATCCTGAAATTTTCCAATTTCATAGCTACACAGCATGATAAGTTACC</canonical_amplicon>
		<polymorphic_amplicon>CCAAAGAAATAGGTTAACTGACAAGGAGTATTTGCTCTTTTCGATTGCCTCTTGTCCTGTTAATATCAATCCTTTGGGCATTTATGAATCGGGAAAATGGGTCTTCTYTAACGGCAGCAACTTCTGTGACATGTTCGTCATCTTCATCACATCGATCTAGAAGAAATTGAGAGAACTTATTTTTCCATTCATCCTCGGCGAAACAATCCTGAAATTTTCCAATTTCATAGCTACACAGCATGATAAGTTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb943</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1428010</contig_pos>
        <strand>+</strand>
        <context>AAGACAGGTT[C/T]TCAGTTGCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATAGTTTTCTGTTATCATTCAATCCAGCAAGATCAGTAGAAGACAGGTT</left_flank>
        <right_flank>TCAGTTGCAGCACCCATTGCTGGGGCATTCAAATAGTTCAAATGGAATCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGTCAAATTGTGGAATTCCCGGAACATTTTTCACTGAAAACGTACGGGATGTGTTCGATTTCAATACACATTTTGAAGGGACCCTTCTATTACAGGGCCCTTTTATTTTTCCCTTCTCGGAGGGTTCTTCTATTGAGGGGGGGGGGGGTCCTTCTTTTTAAAGGGCCCTTCTAATACAGGTTTTCCGGTATCTCCTAAAACCAAAAGAGCTACAAAACGTCGTAATTTTTAATGTTTGAAAATCTGGGGACATACATTTTTTTGGAATCTGATAATTTTGGAATGATTAAAAAGTCTTTATATTGAAACAAGCAACAAAGCAGCACAAATTTATATTGAAAACTGGGAACAACAAAAGAAGGAGTGGTTAACATTCTTGACCCCCATAACCCATTAGTCGAAGGTTTTGTTGTAAAAATAAAAACTTTGAAAAATCATCAGAGTTCAATAGTTTTCTGTTATCATTCAATCCAGCAAGATCAGTAGAAGACAGGTTCTCAGTTGCAGCACCCATTGCTGGGGCATTCAAATAGTTCAAATGGAATCGATGAAGAATGGGATAGGCTTCTTTACTGGCTGATCTTGCCCACCATTCGATCGGATTTTCATTCATATTCGTTCCATCCAAAAACCATTTTTGCAACTCCTTAAAATATCAGAATTATCGTTTTCCAAAGAAATAGGTTAACTGACAAGGAGTATTTGCTCTTTTCGATTGCCTCTTGTCCTGTTAATATCAATCCTTTGGGCATTTATGAATCGGGAAAATGGGTCTTCTTTAACGGCAGCAACTTCTGTGACATGTTCGTCATCTTCATCACATCGATCTAGAAGAAATTGAGAGAACTTATTTTTCCATTCATCCTCGGCGAAACAATCCTGAAATTTTCCAATTTCATAGCTACACAGCATGATAAGTTACCGTAAAACCTCTATTAGAACGGCCCTAGTTACCATAAAATCTCTAATGGAAGGACTTGGAAATATAGTTGGGGGC</canonical>
            <polymorphic>TTCTGTCAAATTGTGGAATTCCCGGAACATTTTTCACTGAAAACGTACGGGATGTGTTCGATTTCAATACACATTTTGAAGGGACCCTTCTATTACAGGGCCCTTTTATTTTTCCCTTCTCGGAGGGTTCTTCTATTGAGGGGGGGGGGGGTCCTTCTTTTTAAAGGGCCCTTCTAATACAGGTTTTCCGGTATCTCCTAAAACCAAAAGAGCTACAAAACGTCGTAATTTTTAATGTTTGAAAATCTGGGGACATACATTTTTTTGGAATCTGATAATTTTGGAATGATTAAAAAGTCTTTATATTGAAACAAGCAACAAAGCAGCACAAATTTATATTGAAAACTGGGAACAACAAAAGAAGGAGTGGTTAACATTCTTGACCCCCATAACCCATTAGTCGAAGGTTTTGTTGTAAAAATAAAAACTTTGAAAAATCATCAGAGTTCAATAGTTTTCTGTTATCATTCAATCCAGCAAGATCAGTAGAAGACAGGTTYTCAGTTGCAGCACCCATTGCTGGGGCATTCAAATAGTTCAAATGGAATCGATGAAGAATGGGATAGGCTTCTTTACTGGCTGATCTTGCCCACCATTCGATCGGATTTTCATTCATATTCGTTCCATCCAAAAACCATTTTTGCAACTCCTTAAAATATCAGAATTATCGTTTTCCAAAGAAATAGGTTAACTGACAAGGAGTATTTGCTCTTTTCGATTGCCTCTTGTCCTGTTAATATCAATCCTTTGGGCATTTATGAATCGGGAAAATGGGTCTTCTTTAACGGCAGCAACTTCTGTGACATGTTCGTCATCTTCATCACATCGATCTAGAAGAAATTGAGAGAACTTATTTTTCCATTCATCCTCGGCGAAACAATCCTGAAATTTTCCAATTTCATAGCTACACAGCATGATAAGTTACCGTAAAACCTCTATTAGAACGGCCCTAGTTACCATAAAATCTCTAATGGAAGGACTTGGAAATATAGTTGGGGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAAAAATCATCAGAGTTCAATA</pcr_primer_p1>
		<pcr_primer_p2>TTTGGAAAACGATAATTCTGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGAAAAATCATCAGAGTTCAATAGTTTTCTGTTATCATTCAATCCAGCAAGATCAGTAGAAGACAGGTTCTCAGTTGCAGCACCCATTGCTGGGGCATTCAAATAGTTCAAATGGAATCGATGAAGAATGGGATAGGCTTCTTTACTGGCTGATCTTGCCCACCATTCGATCGGATTTTCATTCATATTCGTTCCATCCAAAAACCATTTTTGCAACTCCTTAAAATATCAGAATTATCGTTTTCCAAA</canonical_amplicon>
		<polymorphic_amplicon>TTGAAAAATCATCAGAGTTCAATAGTTTTCTGTTATCATTCAATCCAGCAAGATCAGTAGAAGACAGGTTYTCAGTTGCAGCACCCATTGCTGGGGCATTCAAATAGTTCAAATGGAATCGATGAAGAATGGGATAGGCTTCTTTACTGGCTGATCTTGCCCACCATTCGATCGGATTTTCATTCATATTCGTTCCATCCAAAAACCATTTTTGCAACTCCTTAAAATATCAGAATTATCGTTTTCCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb944</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1427978</contig_pos>
        <strand>+</strand>
        <context>TCTGTTATCA[C/T]TCAATCCAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATAAAAACTTTGAAAAATCATCAGAGTTCAATAGTTTTCTGTTATCA</left_flank>
        <right_flank>TCAATCCAGCAAGATCAGTAGAAGACAGGTTCTCAGTTGCAGCACCCATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAGCAAGTCTTTTATCAGAAAATAAAGGTTTCTGTCAAATTGTGGAATTCCCGGAACATTTTTCACTGAAAACGTACGGGATGTGTTCGATTTCAATACACATTTTGAAGGGACCCTTCTATTACAGGGCCCTTTTATTTTTCCCTTCTCGGAGGGTTCTTCTATTGAGGGGGGGGGGGGTCCTTCTTTTTAAAGGGCCCTTCTAATACAGGTTTTCCGGTATCTCCTAAAACCAAAAGAGCTACAAAACGTCGTAATTTTTAATGTTTGAAAATCTGGGGACATACATTTTTTTGGAATCTGATAATTTTGGAATGATTAAAAAGTCTTTATATTGAAACAAGCAACAAAGCAGCACAAATTTATATTGAAAACTGGGAACAACAAAAGAAGGAGTGGTTAACATTCTTGACCCCCATAACCCATTAGTCGAAGGTTTTGTTGTAAAAATAAAAACTTTGAAAAATCATCAGAGTTCAATAGTTTTCTGTTATCATTCAATCCAGCAAGATCAGTAGAAGACAGGTTCTCAGTTGCAGCACCCATTGCTGGGGCATTCAAATAGTTCAAATGGAATCGATGAAGAATGGGATAGGCTTCTTTACTGGCTGATCTTGCCCACCATTCGATCGGATTTTCATTCATATTCGTTCCATCCAAAAACCATTTTTGCAACTCCTTAAAATATCAGAATTATCGTTTTCCAAAGAAATAGGTTAACTGACAAGGAGTATTTGCTCTTTTCGATTGCCTCTTGTCCTGTTAATATCAATCCTTTGGGCATTTATGAATCGGGAAAATGGGTCTTCTTTAACGGCAGCAACTTCTGTGACATGTTCGTCATCTTCATCACATCGATCTAGAAGAAATTGAGAGAACTTATTTTTCCATTCATCCTCGGCGAAACAATCCTGAAATTTTCCAATTTCATAGCTACACAGCATGATAAGTTACCGTAAAACCTCTATTAGAACGGCCCTAGTTACCATAAAATCTC</canonical>
            <polymorphic>TTTGAGCAAGTCTTTTATCAGAAAATAAAGGTTTCTGTCAAATTGTGGAATTCCCGGAACATTTTTCACTGAAAACGTACGGGATGTGTTCGATTTCAATACACATTTTGAAGGGACCCTTCTATTACAGGGCCCTTTTATTTTTCCCTTCTCGGAGGGTTCTTCTATTGAGGGGGGGGGGGGTCCTTCTTTTTAAAGGGCCCTTCTAATACAGGTTTTCCGGTATCTCCTAAAACCAAAAGAGCTACAAAACGTCGTAATTTTTAATGTTTGAAAATCTGGGGACATACATTTTTTTGGAATCTGATAATTTTGGAATGATTAAAAAGTCTTTATATTGAAACAAGCAACAAAGCAGCACAAATTTATATTGAAAACTGGGAACAACAAAAGAAGGAGTGGTTAACATTCTTGACCCCCATAACCCATTAGTCGAAGGTTTTGTTGTAAAAATAAAAACTTTGAAAAATCATCAGAGTTCAATAGTTTTCTGTTATCAYTCAATCCAGCAAGATCAGTAGAAGACAGGTTCTCAGTTGCAGCACCCATTGCTGGGGCATTCAAATAGTTCAAATGGAATCGATGAAGAATGGGATAGGCTTCTTTACTGGCTGATCTTGCCCACCATTCGATCGGATTTTCATTCATATTCGTTCCATCCAAAAACCATTTTTGCAACTCCTTAAAATATCAGAATTATCGTTTTCCAAAGAAATAGGTTAACTGACAAGGAGTATTTGCTCTTTTCGATTGCCTCTTGTCCTGTTAATATCAATCCTTTGGGCATTTATGAATCGGGAAAATGGGTCTTCTTTAACGGCAGCAACTTCTGTGACATGTTCGTCATCTTCATCACATCGATCTAGAAGAAATTGAGAGAACTTATTTTTCCATTCATCCTCGGCGAAACAATCCTGAAATTTTCCAATTTCATAGCTACACAGCATGATAAGTTACCGTAAAACCTCTATTAGAACGGCCCTAGTTACCATAAAATCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCACAAATTTATATTGAAAACT</pcr_primer_p1>
		<pcr_primer_p2>GTAAAGAAGCCTATCCCATTCT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CAGCACAAATTTATATTGAAAACTGGGAACAACAAAAGAAGGAGTGGTTAACATTCTTGACCCCCATAACCCATTAGTCGAAGGTTTTGTTGTAAAAATAAAAACTTTGAAAAATCATCAGAGTTCAATAGTTTTCTGTTATCATTCAATCCAGCAAGATCAGTAGAAGACAGGTTCTCAGTTGCAGCACCCATTGCTGGGGCATTCAAATAGTTCAAATGGAATCGATGAAGAATGGGATAGGCTTCTTTAC</canonical_amplicon>
		<polymorphic_amplicon>CAGCACAAATTTATATTGAAAACTGGGAACAACAAAAGAAGGAGTGGTTAACATTCTTGACCCCCATAACCCATTAGTCGAAGGTTTTGTTGTAAAAATAAAAACTTTGAAAAATCATCAGAGTTCAATAGTTTTCTGTTATCAYTCAATCCAGCAAGATCAGTAGAAGACAGGTTCTCAGTTGCAGCACCCATTGCTGGGGCATTCAAATAGTTCAAATGGAATCGATGAAGAATGGGATAGGCTTCTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb945</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1427860</contig_pos>
        <strand>+</strand>
        <context>TGAAAACTGG[A/G]AACAACAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTATATTGAAACAAGCAACAAAGCAGCACAAATTTATATTGAAAACTGG</left_flank>
        <right_flank>AACAACAAAAGAAGGAGTGGTTAACATTCTTGACCCCCATAACCCATTAG</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTGCCCTTCTATTGCAGGGGCCCTTCTATTTTCCGGACATTTTTCCCTACGTTTTTCATCGAAAAATTCGACGAATTCTCGTTCAAAATTCATGAAAATCTGTCAATTTCACCAAATTTGAGCAAGTCTTTTATCAGAAAATAAAGGTTTCTGTCAAATTGTGGAATTCCCGGAACATTTTTCACTGAAAACGTACGGGATGTGTTCGATTTCAATACACATTTTGAAGGGACCCTTCTATTACAGGGCCCTTTTATTTTTCCCTTCTCGGAGGGTTCTTCTATTGAGGGGGGGGGGGGTCCTTCTTTTTAAAGGGCCCTTCTAATACAGGTTTTCCGGTATCTCCTAAAACCAAAAGAGCTACAAAACGTCGTAATTTTTAATGTTTGAAAATCTGGGGACATACATTTTTTTGGAATCTGATAATTTTGGAATGATTAAAAAGTCTTTATATTGAAACAAGCAACAAAGCAGCACAAATTTATATTGAAAACTGGGAACAACAAAAGAAGGAGTGGTTAACATTCTTGACCCCCATAACCCATTAGTCGAAGGTTTTGTTGTAAAAATAAAAACTTTGAAAAATCATCAGAGTTCAATAGTTTTCTGTTATCATTCAATCCAGCAAGATCAGTAGAAGACAGGTTCTCAGTTGCAGCACCCATTGCTGGGGCATTCAAATAGTTCAAATGGAATCGATGAAGAATGGGATAGGCTTCTTTACTGGCTGATCTTGCCCACCATTCGATCGGATTTTCATTCATATTCGTTCCATCCAAAAACCATTTTTGCAACTCCTTAAAATATCAGAATTATCGTTTTCCAAAGAAATAGGTTAACTGACAAGGAGTATTTGCTCTTTTCGATTGCCTCTTGTCCTGTTAATATCAATCCTTTGGGCATTTATGAATCGGGAAAATGGGTCTTCTTTAACGGCAGCAACTTCTGTGACATGTTCGTCATCTTCATCACATCGATCTAGAAGAAATTGAGAGAAC</canonical>
            <polymorphic>GAGTGCCCTTCTATTGCAGGGGCCCTTCTATTTTCCGGACATTTTTCCCTACGTTTTTCATCGAAAAATTCGACGAATTCTCGTTCAAAATTCATGAAAATCTGTCAATTTCACCAAATTTGAGCAAGTCTTTTATCAGAAAATAAAGGTTTCTGTCAAATTGTGGAATTCCCGGAACATTTTTCACTGAAAACGTACGGGATGTGTTCGATTTCAATACACATTTTGAAGGGACCCTTCTATTACAGGGCCCTTTTATTTTTCCCTTCTCGGAGGGTTCTTCTATTGAGGGGGGGGGGGGTCCTTCTTTTTAAAGGGCCCTTCTAATACAGGTTTTCCGGTATCTCCTAAAACCAAAAGAGCTACAAAACGTCGTAATTTTTAATGTTTGAAAATCTGGGGACATACATTTTTTTGGAATCTGATAATTTTGGAATGATTAAAAAGTCTTTATATTGAAACAAGCAACAAAGCAGCACAAATTTATATTGAAAACTGGRAACAACAAAAGAAGGAGTGGTTAACATTCTTGACCCCCATAACCCATTAGTCGAAGGTTTTGTTGTAAAAATAAAAACTTTGAAAAATCATCAGAGTTCAATAGTTTTCTGTTATCATTCAATCCAGCAAGATCAGTAGAAGACAGGTTCTCAGTTGCAGCACCCATTGCTGGGGCATTCAAATAGTTCAAATGGAATCGATGAAGAATGGGATAGGCTTCTTTACTGGCTGATCTTGCCCACCATTCGATCGGATTTTCATTCATATTCGTTCCATCCAAAAACCATTTTTGCAACTCCTTAAAATATCAGAATTATCGTTTTCCAAAGAAATAGGTTAACTGACAAGGAGTATTTGCTCTTTTCGATTGCCTCTTGTCCTGTTAATATCAATCCTTTGGGCATTTATGAATCGGGAAAATGGGTCTTCTTTAACGGCAGCAACTTCTGTGACATGTTCGTCATCTTCATCACATCGATCTAGAAGAAATTGAGAGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAAACGTCGTAATTTTTAATG</pcr_primer_p1>
		<pcr_primer_p2>CAGAAAACTATTGAACTCTGATGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACAAAACGTCGTAATTTTTAATGTTTGAAAATCTGGGGACATACATTTTTTTGGAATCTGATAATTTTGGAATGATTAAAAAGTCTTTATATTGAAACAAGCAACAAAGCAGCACAAATTTATATTGAAAACTGGGAACAACAAAAGAAGGAGTGGTTAACATTCTTGACCCCCATAACCCATTAGTCGAAGGTTTTGTTGTAAAAATAAAAACTTTGAAAAATCATCAGAGTTCAATAGTTTTCTG</canonical_amplicon>
		<polymorphic_amplicon>ACAAAACGTCGTAATTTTTAATGTTTGAAAATCTGGGGACATACATTTTTTTGGAATCTGATAATTTTGGAATGATTAAAAAGTCTTTATATTGAAACAAGCAACAAAGCAGCACAAATTTATATTGAAAACTGGRAACAACAAAAGAAGGAGTGGTTAACATTCTTGACCCCCATAACCCATTAGTCGAAGGTTTTGTTGTAAAAATAAAAACTTTGAAAAATCATCAGAGTTCAATAGTTTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb946</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1427833</contig_pos>
        <strand>+</strand>
        <context>AAGCAACAAA[A/G]CAGCACAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATAATTTTGGAATGATTAAAAAGTCTTTATATTGAAACAAGCAACAAA</left_flank>
        <right_flank>CAGCACAAATTTATATTGAAAACTGGGAACAACAAAAGAAGGAGTGGTTA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTTCTATTTTTCCAAGTCCCTCTCGGAGTGCCCTTCTATTGCAGGGGCCCTTCTATTTTCCGGACATTTTTCCCTACGTTTTTCATCGAAAAATTCGACGAATTCTCGTTCAAAATTCATGAAAATCTGTCAATTTCACCAAATTTGAGCAAGTCTTTTATCAGAAAATAAAGGTTTCTGTCAAATTGTGGAATTCCCGGAACATTTTTCACTGAAAACGTACGGGATGTGTTCGATTTCAATACACATTTTGAAGGGACCCTTCTATTACAGGGCCCTTTTATTTTTCCCTTCTCGGAGGGTTCTTCTATTGAGGGGGGGGGGGGTCCTTCTTTTTAAAGGGCCCTTCTAATACAGGTTTTCCGGTATCTCCTAAAACCAAAAGAGCTACAAAACGTCGTAATTTTTAATGTTTGAAAATCTGGGGACATACATTTTTTTGGAATCTGATAATTTTGGAATGATTAAAAAGTCTTTATATTGAAACAAGCAACAAAGCAGCACAAATTTATATTGAAAACTGGGAACAACAAAAGAAGGAGTGGTTAACATTCTTGACCCCCATAACCCATTAGTCGAAGGTTTTGTTGTAAAAATAAAAACTTTGAAAAATCATCAGAGTTCAATAGTTTTCTGTTATCATTCAATCCAGCAAGATCAGTAGAAGACAGGTTCTCAGTTGCAGCACCCATTGCTGGGGCATTCAAATAGTTCAAATGGAATCGATGAAGAATGGGATAGGCTTCTTTACTGGCTGATCTTGCCCACCATTCGATCGGATTTTCATTCATATTCGTTCCATCCAAAAACCATTTTTGCAACTCCTTAAAATATCAGAATTATCGTTTTCCAAAGAAATAGGTTAACTGACAAGGAGTATTTGCTCTTTTCGATTGCCTCTTGTCCTGTTAATATCAATCCTTTGGGCATTTATGAATCGGGAAAATGGGTCTTCTTTAACGGCAGCAACTTCTGTGACATGTTCGTCATCTTCATCA</canonical>
            <polymorphic>CCTTTCTATTTTTCCAAGTCCCTCTCGGAGTGCCCTTCTATTGCAGGGGCCCTTCTATTTTCCGGACATTTTTCCCTACGTTTTTCATCGAAAAATTCGACGAATTCTCGTTCAAAATTCATGAAAATCTGTCAATTTCACCAAATTTGAGCAAGTCTTTTATCAGAAAATAAAGGTTTCTGTCAAATTGTGGAATTCCCGGAACATTTTTCACTGAAAACGTACGGGATGTGTTCGATTTCAATACACATTTTGAAGGGACCCTTCTATTACAGGGCCCTTTTATTTTTCCCTTCTCGGAGGGTTCTTCTATTGAGGGGGGGGGGGGTCCTTCTTTTTAAAGGGCCCTTCTAATACAGGTTTTCCGGTATCTCCTAAAACCAAAAGAGCTACAAAACGTCGTAATTTTTAATGTTTGAAAATCTGGGGACATACATTTTTTTGGAATCTGATAATTTTGGAATGATTAAAAAGTCTTTATATTGAAACAAGCAACAAARCAGCACAAATTTATATTGAAAACTGGGAACAACAAAAGAAGGAGTGGTTAACATTCTTGACCCCCATAACCCATTAGTCGAAGGTTTTGTTGTAAAAATAAAAACTTTGAAAAATCATCAGAGTTCAATAGTTTTCTGTTATCATTCAATCCAGCAAGATCAGTAGAAGACAGGTTCTCAGTTGCAGCACCCATTGCTGGGGCATTCAAATAGTTCAAATGGAATCGATGAAGAATGGGATAGGCTTCTTTACTGGCTGATCTTGCCCACCATTCGATCGGATTTTCATTCATATTCGTTCCATCCAAAAACCATTTTTGCAACTCCTTAAAATATCAGAATTATCGTTTTCCAAAGAAATAGGTTAACTGACAAGGAGTATTTGCTCTTTTCGATTGCCTCTTGTCCTGTTAATATCAATCCTTTGGGCATTTATGAATCGGGAAAATGGGTCTTCTTTAACGGCAGCAACTTCTGTGACATGTTCGTCATCTTCATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>503 281 184 32</canonical_bands>
                <polymorphic_bands>687 281 32</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>500 281 184 35</canonical_bands>
                <polymorphic_bands>684 281 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAAACGTCGTAATTTTTAATG</pcr_primer_p1>
		<pcr_primer_p2>CAGAAAACTATTGAACTCTGATGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACAAAACGTCGTAATTTTTAATGTTTGAAAATCTGGGGACATACATTTTTTTGGAATCTGATAATTTTGGAATGATTAAAAAGTCTTTATATTGAAACAAGCAACAAAGCAGCACAAATTTATATTGAAAACTGGGAACAACAAAAGAAGGAGTGGTTAACATTCTTGACCCCCATAACCCATTAGTCGAAGGTTTTGTTGTAAAAATAAAAACTTTGAAAAATCATCAGAGTTCAATAGTTTTCTG</canonical_amplicon>
		<polymorphic_amplicon>ACAAAACGTCGTAATTTTTAATGTTTGAAAATCTGGGGACATACATTTTTTTGGAATCTGATAATTTTGGAATGATTAAAAAGTCTTTATATTGAAACAAGCAACAAARCAGCACAAATTTATATTGAAAACTGGGAACAACAAAAGAAGGAGTGGTTAACATTCTTGACCCCCATAACCCATTAGTCGAAGGTTTTGTTGTAAAAATAAAAACTTTGAAAAATCATCAGAGTTCAATAGTTTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb947</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1427814</contig_pos>
        <strand>+</strand>
        <context>AAAGTCTTTA[A/T]ATTGAAACAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATACATTTTTTTGGAATCTGATAATTTTGGAATGATTAAAAAGTCTTTA</left_flank>
        <right_flank>ATTGAAACAAGCAACAAAGCAGCACAAATTTATATTGAAAACTGGGAACA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTATATTAGAAGGGACGGCCTTTCTATTTTTCCAAGTCCCTCTCGGAGTGCCCTTCTATTGCAGGGGCCCTTCTATTTTCCGGACATTTTTCCCTACGTTTTTCATCGAAAAATTCGACGAATTCTCGTTCAAAATTCATGAAAATCTGTCAATTTCACCAAATTTGAGCAAGTCTTTTATCAGAAAATAAAGGTTTCTGTCAAATTGTGGAATTCCCGGAACATTTTTCACTGAAAACGTACGGGATGTGTTCGATTTCAATACACATTTTGAAGGGACCCTTCTATTACAGGGCCCTTTTATTTTTCCCTTCTCGGAGGGTTCTTCTATTGAGGGGGGGGGGGGTCCTTCTTTTTAAAGGGCCCTTCTAATACAGGTTTTCCGGTATCTCCTAAAACCAAAAGAGCTACAAAACGTCGTAATTTTTAATGTTTGAAAATCTGGGGACATACATTTTTTTGGAATCTGATAATTTTGGAATGATTAAAAAGTCTTTATATTGAAACAAGCAACAAAGCAGCACAAATTTATATTGAAAACTGGGAACAACAAAAGAAGGAGTGGTTAACATTCTTGACCCCCATAACCCATTAGTCGAAGGTTTTGTTGTAAAAATAAAAACTTTGAAAAATCATCAGAGTTCAATAGTTTTCTGTTATCATTCAATCCAGCAAGATCAGTAGAAGACAGGTTCTCAGTTGCAGCACCCATTGCTGGGGCATTCAAATAGTTCAAATGGAATCGATGAAGAATGGGATAGGCTTCTTTACTGGCTGATCTTGCCCACCATTCGATCGGATTTTCATTCATATTCGTTCCATCCAAAAACCATTTTTGCAACTCCTTAAAATATCAGAATTATCGTTTTCCAAAGAAATAGGTTAACTGACAAGGAGTATTTGCTCTTTTCGATTGCCTCTTGTCCTGTTAATATCAATCCTTTGGGCATTTATGAATCGGGAAAATGGGTCTTCTTTAACGGCAGCAACTTCTGTGAC</canonical>
            <polymorphic>CCTATATTAGAAGGGACGGCCTTTCTATTTTTCCAAGTCCCTCTCGGAGTGCCCTTCTATTGCAGGGGCCCTTCTATTTTCCGGACATTTTTCCCTACGTTTTTCATCGAAAAATTCGACGAATTCTCGTTCAAAATTCATGAAAATCTGTCAATTTCACCAAATTTGAGCAAGTCTTTTATCAGAAAATAAAGGTTTCTGTCAAATTGTGGAATTCCCGGAACATTTTTCACTGAAAACGTACGGGATGTGTTCGATTTCAATACACATTTTGAAGGGACCCTTCTATTACAGGGCCCTTTTATTTTTCCCTTCTCGGAGGGTTCTTCTATTGAGGGGGGGGGGGGTCCTTCTTTTTAAAGGGCCCTTCTAATACAGGTTTTCCGGTATCTCCTAAAACCAAAAGAGCTACAAAACGTCGTAATTTTTAATGTTTGAAAATCTGGGGACATACATTTTTTTGGAATCTGATAATTTTGGAATGATTAAAAAGTCTTTAWATTGAAACAAGCAACAAAGCAGCACAAATTTATATTGAAAACTGGGAACAACAAAAGAAGGAGTGGTTAACATTCTTGACCCCCATAACCCATTAGTCGAAGGTTTTGTTGTAAAAATAAAAACTTTGAAAAATCATCAGAGTTCAATAGTTTTCTGTTATCATTCAATCCAGCAAGATCAGTAGAAGACAGGTTCTCAGTTGCAGCACCCATTGCTGGGGCATTCAAATAGTTCAAATGGAATCGATGAAGAATGGGATAGGCTTCTTTACTGGCTGATCTTGCCCACCATTCGATCGGATTTTCATTCATATTCGTTCCATCCAAAAACCATTTTTGCAACTCCTTAAAATATCAGAATTATCGTTTTCCAAAGAAATAGGTTAACTGACAAGGAGTATTTGCTCTTTTCGATTGCCTCTTGTCCTGTTAATATCAATCCTTTGGGCATTTATGAATCGGGAAAATGGGTCTTCTTTAACGGCAGCAACTTCTGTGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAAACGTCGTAATTTTTAATG</pcr_primer_p1>
		<pcr_primer_p2>CAGAAAACTATTGAACTCTGATGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACAAAACGTCGTAATTTTTAATGTTTGAAAATCTGGGGACATACATTTTTTTGGAATCTGATAATTTTGGAATGATTAAAAAGTCTTTATATTGAAACAAGCAACAAAGCAGCACAAATTTATATTGAAAACTGGGAACAACAAAAGAAGGAGTGGTTAACATTCTTGACCCCCATAACCCATTAGTCGAAGGTTTTGTTGTAAAAATAAAAACTTTGAAAAATCATCAGAGTTCAATAGTTTTCTG</canonical_amplicon>
		<polymorphic_amplicon>ACAAAACGTCGTAATTTTTAATGTTTGAAAATCTGGGGACATACATTTTTTTGGAATCTGATAATTTTGGAATGATTAAAAAGTCTTTAWATTGAAACAAGCAACAAAGCAGCACAAATTTATATTGAAAACTGGGAACAACAAAAGAAGGAGTGGTTAACATTCTTGACCCCCATAACCCATTAGTCGAAGGTTTTGTTGTAAAAATAAAAACTTTGAAAAATCATCAGAGTTCAATAGTTTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb948</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1436778</contig_pos>
        <strand></strand>
        <context>ATTGGAATTT[C/T]TGATACATTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATTCCAGTAAAACTTCTCTTCCTCCCAGGCTCTCACGAATTGGAATTT</left_flank>
        <right_flank>TGATACATTGGTTAGGTATCGGACCATTCCAAACTGTTCCAGATGTTCTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTCTAGAATTATTCAGGATAAAGAAAATATATTCTTAAATTCTCATAATTCTTCGGAATGTCTATCTTTTTTTGAATTTTCGGATATTCTCTCAGATTCCTGGATCCCTAAATTCTAAGTCTTCCTTCTTTTTCTATATTTTTTTCTTCCTCCTTCGCATTGGAAAAAAAAATCTTGATATTTGAGATCAGCATTTTTTTGGCTCAACCCCACTAACACGCACATTTTGCATGAATAATTGGGTCATGGGCACGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGAGAGAGAGCCCATGAATTTGATATGATGTGGTGGTGGTGGTGGTGGGGGATGAGGAATTCAAATGATGTTAGGCATAGAAAACGAGGGGCCGACTTGATTCTTGATATGAAGAAAAATGATGAATGAATTATGACAAATGAGAGATCATTCCAGTAAAACTTCTCTTCCTCCCAGGCTCTCACGAATTGGAATTTCTGATACATTGGTTAGGTATCGGACCATTCCAAACTGTTCCAGATGTTCTGAAACTTTCCATCATAGAGATAAAGACTATTTTTCCTAGTTAGGTCACTTCTGGGATAGATGACCCTGGGTTTTTCCAGACCACTGAGCTTATTAAAGGACGGTATTCGTCATTCAAGGTTGTCTTTGGACCCTCATTGTTCTCTACTCAGTGTGAAACACAGCTGAATGTGCTCTTTAAATCTACAAAGATGTACTAATGGTAATTTCAGGATGGGCAGACTGATTACAGGCTCCATCTCAAAAACATCCAAATTATTTTAAACCAACTCAGATTGAGTCAAAAACGGATTGAAAACGGTCCAAGAACTAGGTAACTGGTCTACGGTATCTGCATTAAAAAAATTTTCTGAAAATTCCTGGGTTTTCTGGTATTCCACATTACTGCGAGACACCTATTTTTCACGTTTTCAGTACAAAAACTGGCCAATAAGGGGTGTTTTCCGAAAGCG</canonical>
            <polymorphic>ATTTTCTAGAATTATTCAGGATAAAGAAAATATATTCTTAAATTCTCATAATTCTTCGGAATGTCTATCTTTTTTTGAATTTTCGGATATTCTCTCAGATTCCTGGATCCCTAAATTCTAAGTCTTCCTTCTTTTTCTATATTTTTTTCTTCCTCCTTCGCATTGGAAAAAAAAATCTTGATATTTGAGATCAGCATTTTTTTGGCTCAACCCCACTAACACGCACATTTTGCATGAATAATTGGGTCATGGGCACGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGAGAGAGAGCCCATGAATTTGATATGATGTGGTGGTGGTGGTGGTGGGGGATGAGGAATTCAAATGATGTTAGGCATAGAAAACGAGGGGCCGACTTGATTCTTGATATGAAGAAAAATGATGAATGAATTATGACAAATGAGAGATCATTCCAGTAAAACTTCTCTTCCTCCCAGGCTCTCACGAATTGGAATTTYTGATACATTGGTTAGGTATCGGACCATTCCAAACTGTTCCAGATGTTCTGAAACTTTCCATCATAGAGATAAAGACTATTTTTCCTAGTTAGGTCACTTCTGGGATAGATGACCCTGGGTTTTTCCAGACCACTGAGCTTATTAAAGGACGGTATTCGTCATTCAAGGTTGTCTTTGGACCCTCATTGTTCTCTACTCAGTGTGAAACACAGCTGAATGTGCTCTTTAAATCTACAAAGATGTACTAATGGTAATTTCAGGATGGGCAGACTGATTACAGGCTCCATCTCAAAAACATCCAAATTATTTTAAACCAACTCAGATTGAGTCAAAAACGGATTGAAAACGGTCCAAGAACTAGGTAACTGGTCTACGGTATCTGCATTAAAAAAATTTTCTGAAAATTCCTGGGTTTTCTGGTATTCCACATTACTGCGAGACACCTATTTTTCACGTTTTCAGTACAAAAACTGGCCAATAAGGGGTGTTTTCCGAAAGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>404 272 94 78 58 28 27 20 12 7</canonical_bands>
                <polymorphic_bands>424 272 94 78 58 28 27 12 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCAAATGATGTTAGGCATAGA</pcr_primer_p1>
		<pcr_primer_p2>ATCTATCCCAGAAGTGACCTAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCAAATGATGTTAGGCATAGAAAACGAGGGGCCGACTTGATTCTTGATATGAAGAAAAATGATGAATGAATTATGACAAATGAGAGATCATTCCAGTAAAACTTCTCTTCCTCCCAGGCTCTCACGAATTGGAATTTCTGATACATTGGTTAGGTATCGGACCATTCCAAACTGTTCCAGATGTTCTGAAACTTTCCATCATAGAGATAAAGACTATTTTTCCTAGTTAGGTCACTTCTGGGATAGAT</canonical_amplicon>
		<polymorphic_amplicon>ATTCAAATGATGTTAGGCATAGAAAACGAGGGGCCGACTTGATTCTTGATATGAAGAAAAATGATGAATGAATTATGACAAATGAGAGATCATTCCAGTAAAACTTCTCTTCCTCCCAGGCTCTCACGAATTGGAATTTYTGATACATTGGTTAGGTATCGGACCATTCCAAACTGTTCCAGATGTTCTGAAACTTTCCATCATAGAGATAAAGACTATTTTTCCTAGTTAGGTCACTTCTGGGATAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb949</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1436795</contig_pos>
        <strand></strand>
        <context>ATTGGTTAGG[T/A]ATCGGACCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CTCTTCCTCCCAGGCTCTCACGAATTGGAATTTCTGATACATTGGTTAGG</left_flank>
        <right_flank>ATCGGACCATTCCAAACTGTTCCAGATGTTCTGAAACTTTCCATCATAGA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGATAAAGAAAATATATTCTTAAATTCTCATAATTCTTCGGAATGTCTATCTTTTTTTGAATTTTCGGATATTCTCTCAGATTCCTGGATCCCTAAATTCTAAGTCTTCCTTCTTTTTCTATATTTTTTTCTTCCTCCTTCGCATTGGAAAAAAAAATCTTGATATTTGAGATCAGCATTTTTTTGGCTCAACCCCACTAACACGCACATTTTGCATGAATAATTGGGTCATGGGCACGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGAGAGAGAGCCCATGAATTTGATATGATGTGGTGGTGGTGGTGGTGGGGGATGAGGAATTCAAATGATGTTAGGCATAGAAAACGAGGGGCCGACTTGATTCTTGATATGAAGAAAAATGATGAATGAATTATGACAAATGAGAGATCATTCCAGTAAAACTTCTCTTCCTCCCAGGCTCTCACGAATTGGAATTTCTGATACATTGGTTAGGTATCGGACCATTCCAAACTGTTCCAGATGTTCTGAAACTTTCCATCATAGAGATAAAGACTATTTTTCCTAGTTAGGTCACTTCTGGGATAGATGACCCTGGGTTTTTCCAGACCACTGAGCTTATTAAAGGACGGTATTCGTCATTCAAGGTTGTCTTTGGACCCTCATTGTTCTCTACTCAGTGTGAAACACAGCTGAATGTGCTCTTTAAATCTACAAAGATGTACTAATGGTAATTTCAGGATGGGCAGACTGATTACAGGCTCCATCTCAAAAACATCCAAATTATTTTAAACCAACTCAGATTGAGTCAAAAACGGATTGAAAACGGTCCAAGAACTAGGTAACTGGTCTACGGTATCTGCATTAAAAAAATTTTCTGAAAATTCCTGGGTTTTCTGGTATTCCACATTACTGCGAGACACCTATTTTTCACGTTTTCAGTACAAAAACTGGCCAATAAGGGGTGTTTTCCGAAAGCGGCAAAAATAGGAATTTT</canonical>
            <polymorphic>AGGATAAAGAAAATATATTCTTAAATTCTCATAATTCTTCGGAATGTCTATCTTTTTTTGAATTTTCGGATATTCTCTCAGATTCCTGGATCCCTAAATTCTAAGTCTTCCTTCTTTTTCTATATTTTTTTCTTCCTCCTTCGCATTGGAAAAAAAAATCTTGATATTTGAGATCAGCATTTTTTTGGCTCAACCCCACTAACACGCACATTTTGCATGAATAATTGGGTCATGGGCACGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGAGAGAGAGCCCATGAATTTGATATGATGTGGTGGTGGTGGTGGTGGGGGATGAGGAATTCAAATGATGTTAGGCATAGAAAACGAGGGGCCGACTTGATTCTTGATATGAAGAAAAATGATGAATGAATTATGACAAATGAGAGATCATTCCAGTAAAACTTCTCTTCCTCCCAGGCTCTCACGAATTGGAATTTCTGATACATTGGTTAGGWATCGGACCATTCCAAACTGTTCCAGATGTTCTGAAACTTTCCATCATAGAGATAAAGACTATTTTTCCTAGTTAGGTCACTTCTGGGATAGATGACCCTGGGTTTTTCCAGACCACTGAGCTTATTAAAGGACGGTATTCGTCATTCAAGGTTGTCTTTGGACCCTCATTGTTCTCTACTCAGTGTGAAACACAGCTGAATGTGCTCTTTAAATCTACAAAGATGTACTAATGGTAATTTCAGGATGGGCAGACTGATTACAGGCTCCATCTCAAAAACATCCAAATTATTTTAAACCAACTCAGATTGAGTCAAAAACGGATTGAAAACGGTCCAAGAACTAGGTAACTGGTCTACGGTATCTGCATTAAAAAAATTTTCTGAAAATTCCTGGGTTTTCTGGTATTCCACATTACTGCGAGACACCTATTTTTCACGTTTTCAGTACAAAAACTGGCCAATAAGGGGTGTTTTCCGAAAGCGGCAAAAATAGGAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCAAATGATGTTAGGCATAGA</pcr_primer_p1>
		<pcr_primer_p2>ATCTATCCCAGAAGTGACCTAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCAAATGATGTTAGGCATAGAAAACGAGGGGCCGACTTGATTCTTGATATGAAGAAAAATGATGAATGAATTATGACAAATGAGAGATCATTCCAGTAAAACTTCTCTTCCTCCCAGGCTCTCACGAATTGGAATTTCTGATACATTGGTTAGGTATCGGACCATTCCAAACTGTTCCAGATGTTCTGAAACTTTCCATCATAGAGATAAAGACTATTTTTCCTAGTTAGGTCACTTCTGGGATAGAT</canonical_amplicon>
		<polymorphic_amplicon>ATTCAAATGATGTTAGGCATAGAAAACGAGGGGCCGACTTGATTCTTGATATGAAGAAAAATGATGAATGAATTATGACAAATGAGAGATCATTCCAGTAAAACTTCTCTTCCTCCCAGGCTCTCACGAATTGGAATTTCTGATACATTGGTTAGGWATCGGACCATTCCAAACTGTTCCAGATGTTCTGAAACTTTCCATCATAGAGATAAAGACTATTTTTCCTAGTTAGGTCACTTCTGGGATAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb950</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1436908</contig_pos>
        <strand></strand>
        <context>TTTTTCCAGA[C/G]CACTGAGCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTCCTAGTTAGGTCACTTCTGGGATAGATGACCCTGGGTTTTTCCAGA</left_flank>
        <right_flank>CACTGAGCTTATTAAAGGACGGTATTCGTCATTCAAGGTTGTCTTTGGAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTTCTATATTTTTTTCTTCCTCCTTCGCATTGGAAAAAAAAATCTTGATATTTGAGATCAGCATTTTTTTGGCTCAACCCCACTAACACGCACATTTTGCATGAATAATTGGGTCATGGGCACGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGAGAGAGAGCCCATGAATTTGATATGATGTGGTGGTGGTGGTGGTGGGGGATGAGGAATTCAAATGATGTTAGGCATAGAAAACGAGGGGCCGACTTGATTCTTGATATGAAGAAAAATGATGAATGAATTATGACAAATGAGAGATCATTCCAGTAAAACTTCTCTTCCTCCCAGGCTCTCACGAATTGGAATTTCTGATACATTGGTTAGGTATCGGACCATTCCAAACTGTTCCAGATGTTCTGAAACTTTCCATCATAGAGATAAAGACTATTTTTCCTAGTTAGGTCACTTCTGGGATAGATGACCCTGGGTTTTTCCAGACCACTGAGCTTATTAAAGGACGGTATTCGTCATTCAAGGTTGTCTTTGGACCCTCATTGTTCTCTACTCAGTGTGAAACACAGCTGAATGTGCTCTTTAAATCTACAAAGATGTACTAATGGTAATTTCAGGATGGGCAGACTGATTACAGGCTCCATCTCAAAAACATCCAAATTATTTTAAACCAACTCAGATTGAGTCAAAAACGGATTGAAAACGGTCCAAGAACTAGGTAACTGGTCTACGGTATCTGCATTAAAAAAATTTTCTGAAAATTCCTGGGTTTTCTGGTATTCCACATTACTGCGAGACACCTATTTTTCACGTTTTCAGTACAAAAACTGGCCAATAAGGGGTGTTTTCCGAAAGCGGCAAAAATAGGAATTTTAAAAAAATTAGGTGAACGTATAGTTTTCAATTTATATTCAAAGTTTTCAAAGTGATACGAAACTTGAAATCCGAGTTCCAGACTCCTGAAAATGCTAAAAATCAACTGTAAAT</canonical>
            <polymorphic>CTTTTTCTATATTTTTTTCTTCCTCCTTCGCATTGGAAAAAAAAATCTTGATATTTGAGATCAGCATTTTTTTGGCTCAACCCCACTAACACGCACATTTTGCATGAATAATTGGGTCATGGGCACGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGAGAGAGAGCCCATGAATTTGATATGATGTGGTGGTGGTGGTGGTGGGGGATGAGGAATTCAAATGATGTTAGGCATAGAAAACGAGGGGCCGACTTGATTCTTGATATGAAGAAAAATGATGAATGAATTATGACAAATGAGAGATCATTCCAGTAAAACTTCTCTTCCTCCCAGGCTCTCACGAATTGGAATTTCTGATACATTGGTTAGGTATCGGACCATTCCAAACTGTTCCAGATGTTCTGAAACTTTCCATCATAGAGATAAAGACTATTTTTCCTAGTTAGGTCACTTCTGGGATAGATGACCCTGGGTTTTTCCAGASCACTGAGCTTATTAAAGGACGGTATTCGTCATTCAAGGTTGTCTTTGGACCCTCATTGTTCTCTACTCAGTGTGAAACACAGCTGAATGTGCTCTTTAAATCTACAAAGATGTACTAATGGTAATTTCAGGATGGGCAGACTGATTACAGGCTCCATCTCAAAAACATCCAAATTATTTTAAACCAACTCAGATTGAGTCAAAAACGGATTGAAAACGGTCCAAGAACTAGGTAACTGGTCTACGGTATCTGCATTAAAAAAATTTTCTGAAAATTCCTGGGTTTTCTGGTATTCCACATTACTGCGAGACACCTATTTTTCACGTTTTCAGTACAAAAACTGGCCAATAAGGGGTGTTTTCCGAAAGCGGCAAAAATAGGAATTTTAAAAAAATTAGGTGAACGTATAGTTTTCAATTTATATTCAAAGTTTTCAAAGTGATACGAAACTTGAAATCCGAGTTCCAGACTCCTGAAAATGCTAAAAATCAACTGTAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTGAAACTTTCCATCATAGAG</pcr_primer_p1>
		<pcr_primer_p2>GAGATGGAGCCTGTAATCAGT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTCTGAAACTTTCCATCATAGAGATAAAGACTATTTTTCCTAGTTAGGTCACTTCTGGGATAGATGACCCTGGGTTTTTCCAGACCACTGAGCTTATTAAAGGACGGTATTCGTCATTCAAGGTTGTCTTTGGACCCTCATTGTTCTCTACTCAGTGTGAAACACAGCTGAATGTGCTCTTTAAATCTACAAAGATGTACTAATGGTAATTTCAGGATGGGCAGACTGATTACAGGCTCCATCTC</canonical_amplicon>
		<polymorphic_amplicon>TTCTGAAACTTTCCATCATAGAGATAAAGACTATTTTTCCTAGTTAGGTCACTTCTGGGATAGATGACCCTGGGTTTTTCCAGASCACTGAGCTTATTAAAGGACGGTATTCGTCATTCAAGGTTGTCTTTGGACCCTCATTGTTCTCTACTCAGTGTGAAACACAGCTGAATGTGCTCTTTAAATCTACAAAGATGTACTAATGGTAATTTCAGGATGGGCAGACTGATTACAGGCTCCATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb951</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1436972</contig_pos>
        <strand></strand>
        <context>CATTGTTCTC[T/A]ACTCAGTGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAAGGACGGTATTCGTCATTCAAGGTTGTCTTTGGACCCTCATTGTTCTC</left_flank>
        <right_flank>ACTCAGTGTGAAACACAGCTGAATGTGCTCTTTAAATCTACAAAGATGTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTTTTTGGCTCAACCCCACTAACACGCACATTTTGCATGAATAATTGGGTCATGGGCACGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGAGAGAGAGCCCATGAATTTGATATGATGTGGTGGTGGTGGTGGTGGGGGATGAGGAATTCAAATGATGTTAGGCATAGAAAACGAGGGGCCGACTTGATTCTTGATATGAAGAAAAATGATGAATGAATTATGACAAATGAGAGATCATTCCAGTAAAACTTCTCTTCCTCCCAGGCTCTCACGAATTGGAATTTCTGATACATTGGTTAGGTATCGGACCATTCCAAACTGTTCCAGATGTTCTGAAACTTTCCATCATAGAGATAAAGACTATTTTTCCTAGTTAGGTCACTTCTGGGATAGATGACCCTGGGTTTTTCCAGACCACTGAGCTTATTAAAGGACGGTATTCGTCATTCAAGGTTGTCTTTGGACCCTCATTGTTCTCTACTCAGTGTGAAACACAGCTGAATGTGCTCTTTAAATCTACAAAGATGTACTAATGGTAATTTCAGGATGGGCAGACTGATTACAGGCTCCATCTCAAAAACATCCAAATTATTTTAAACCAACTCAGATTGAGTCAAAAACGGATTGAAAACGGTCCAAGAACTAGGTAACTGGTCTACGGTATCTGCATTAAAAAAATTTTCTGAAAATTCCTGGGTTTTCTGGTATTCCACATTACTGCGAGACACCTATTTTTCACGTTTTCAGTACAAAAACTGGCCAATAAGGGGTGTTTTCCGAAAGCGGCAAAAATAGGAATTTTAAAAAAATTAGGTGAACGTATAGTTTTCAATTTATATTCAAAGTTTTCAAAGTGATACGAAACTTGAAATCCGAGTTCCAGACTCCTGAAAATGCTAAAAATCAACTGTAAATTACTTTTCACAAATCTCATTGACCTGTACTATACATCCAACTCTATCAATGATTGCCCTTTTGT</canonical>
            <polymorphic>CATTTTTTTGGCTCAACCCCACTAACACGCACATTTTGCATGAATAATTGGGTCATGGGCACGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGGGAGAGAGAGCCCATGAATTTGATATGATGTGGTGGTGGTGGTGGTGGGGGATGAGGAATTCAAATGATGTTAGGCATAGAAAACGAGGGGCCGACTTGATTCTTGATATGAAGAAAAATGATGAATGAATTATGACAAATGAGAGATCATTCCAGTAAAACTTCTCTTCCTCCCAGGCTCTCACGAATTGGAATTTCTGATACATTGGTTAGGTATCGGACCATTCCAAACTGTTCCAGATGTTCTGAAACTTTCCATCATAGAGATAAAGACTATTTTTCCTAGTTAGGTCACTTCTGGGATAGATGACCCTGGGTTTTTCCAGACCACTGAGCTTATTAAAGGACGGTATTCGTCATTCAAGGTTGTCTTTGGACCCTCATTGTTCTCWACTCAGTGTGAAACACAGCTGAATGTGCTCTTTAAATCTACAAAGATGTACTAATGGTAATTTCAGGATGGGCAGACTGATTACAGGCTCCATCTCAAAAACATCCAAATTATTTTAAACCAACTCAGATTGAGTCAAAAACGGATTGAAAACGGTCCAAGAACTAGGTAACTGGTCTACGGTATCTGCATTAAAAAAATTTTCTGAAAATTCCTGGGTTTTCTGGTATTCCACATTACTGCGAGACACCTATTTTTCACGTTTTCAGTACAAAAACTGGCCAATAAGGGGTGTTTTCCGAAAGCGGCAAAAATAGGAATTTTAAAAAAATTAGGTGAACGTATAGTTTTCAATTTATATTCAAAGTTTTCAAAGTGATACGAAACTTGAAATCCGAGTTCCAGACTCCTGAAAATGCTAAAAATCAACTGTAAATTACTTTTCACAAATCTCATTGACCTGTACTATACATCCAACTCTATCAATGATTGCCCTTTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCCTAGTTAGGTCACTTCTG</pcr_primer_p1>
		<pcr_primer_p2>TTGGTTTAAAATAATTTGGATGT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TTTTCCTAGTTAGGTCACTTCTGGGATAGATGACCCTGGGTTTTTCCAGACCACTGAGCTTATTAAAGGACGGTATTCGTCATTCAAGGTTGTCTTTGGACCCTCATTGTTCTCTACTCAGTGTGAAACACAGCTGAATGTGCTCTTTAAATCTACAAAGATGTACTAATGGTAATTTCAGGATGGGCAGACTGATTACAGGCTCCATCTCAAAAACATCCAAATTATTTTAAACCAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCCTAGTTAGGTCACTTCTGGGATAGATGACCCTGGGTTTTTCCAGACCACTGAGCTTATTAAAGGACGGTATTCGTCATTCAAGGTTGTCTTTGGACCCTCATTGTTCTCWACTCAGTGTGAAACACAGCTGAATGTGCTCTTTAAATCTACAAAGATGTACTAATGGTAATTTCAGGATGGGCAGACTGATTACAGGCTCCATCTCAAAAACATCCAAATTATTTTAAACCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb952</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1437100</contig_pos>
        <strand></strand>
        <context>AACCAACTCA[G/A]ATTGAGTCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGATTACAGGCTCCATCTCAAAAACATCCAAATTATTTTAAACCAACTCA</left_flank>
        <right_flank>ATTGAGTCAAAAACGGATTGAAAACGGTCCAAGAACTAGGTAACTGGTCT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATATGATGTGGTGGTGGTGGTGGTGGGGGATGAGGAATTCAAATGATGTTAGGCATAGAAAACGAGGGGCCGACTTGATTCTTGATATGAAGAAAAATGATGAATGAATTATGACAAATGAGAGATCATTCCAGTAAAACTTCTCTTCCTCCCAGGCTCTCACGAATTGGAATTTCTGATACATTGGTTAGGTATCGGACCATTCCAAACTGTTCCAGATGTTCTGAAACTTTCCATCATAGAGATAAAGACTATTTTTCCTAGTTAGGTCACTTCTGGGATAGATGACCCTGGGTTTTTCCAGACCACTGAGCTTATTAAAGGACGGTATTCGTCATTCAAGGTTGTCTTTGGACCCTCATTGTTCTCTACTCAGTGTGAAACACAGCTGAATGTGCTCTTTAAATCTACAAAGATGTACTAATGGTAATTTCAGGATGGGCAGACTGATTACAGGCTCCATCTCAAAAACATCCAAATTATTTTAAACCAACTCAGATTGAGTCAAAAACGGATTGAAAACGGTCCAAGAACTAGGTAACTGGTCTACGGTATCTGCATTAAAAAAATTTTCTGAAAATTCCTGGGTTTTCTGGTATTCCACATTACTGCGAGACACCTATTTTTCACGTTTTCAGTACAAAAACTGGCCAATAAGGGGTGTTTTCCGAAAGCGGCAAAAATAGGAATTTTAAAAAAATTAGGTGAACGTATAGTTTTCAATTTATATTCAAAGTTTTCAAAGTGATACGAAACTTGAAATCCGAGTTCCAGACTCCTGAAAATGCTAAAAATCAACTGTAAATTACTTTTCACAAATCTCATTGACCTGTACTATACATCCAACTCTATCAATGATTGCCCTTTTGTTTATCTGGTATCTCCATAGACCCTCCCAGCCCATATTCTCGCAGATCATAAAATTTTCACTAACACATGCCATCATTATCCTTCAATATCTTTCAAAACCATTTTCCTTGTTCTTGGGCCCCTTTCTC</canonical>
            <polymorphic>TGATATGATGTGGTGGTGGTGGTGGTGGGGGATGAGGAATTCAAATGATGTTAGGCATAGAAAACGAGGGGCCGACTTGATTCTTGATATGAAGAAAAATGATGAATGAATTATGACAAATGAGAGATCATTCCAGTAAAACTTCTCTTCCTCCCAGGCTCTCACGAATTGGAATTTCTGATACATTGGTTAGGTATCGGACCATTCCAAACTGTTCCAGATGTTCTGAAACTTTCCATCATAGAGATAAAGACTATTTTTCCTAGTTAGGTCACTTCTGGGATAGATGACCCTGGGTTTTTCCAGACCACTGAGCTTATTAAAGGACGGTATTCGTCATTCAAGGTTGTCTTTGGACCCTCATTGTTCTCTACTCAGTGTGAAACACAGCTGAATGTGCTCTTTAAATCTACAAAGATGTACTAATGGTAATTTCAGGATGGGCAGACTGATTACAGGCTCCATCTCAAAAACATCCAAATTATTTTAAACCAACTCARATTGAGTCAAAAACGGATTGAAAACGGTCCAAGAACTAGGTAACTGGTCTACGGTATCTGCATTAAAAAAATTTTCTGAAAATTCCTGGGTTTTCTGGTATTCCACATTACTGCGAGACACCTATTTTTCACGTTTTCAGTACAAAAACTGGCCAATAAGGGGTGTTTTCCGAAAGCGGCAAAAATAGGAATTTTAAAAAAATTAGGTGAACGTATAGTTTTCAATTTATATTCAAAGTTTTCAAAGTGATACGAAACTTGAAATCCGAGTTCCAGACTCCTGAAAATGCTAAAAATCAACTGTAAATTACTTTTCACAAATCTCATTGACCTGTACTATACATCCAACTCTATCAATGATTGCCCTTTTGTTTATCTGGTATCTCCATAGACCCTCCCAGCCCATATTCTCGCAGATCATAAAATTTTCACTAACACATGCCATCATTATCCTTCAATATCTTTCAAAACCATTTTCCTTGTTCTTGGGCCCCTTTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 311 122 63</canonical_bands>
                <polymorphic_bands>626 311 63</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>272 233 179 96 94 78 28 20</canonical_bands>
                <polymorphic_bands>350 233 179 96 94 28 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTGATTACAGGCTCCATCT</pcr_primer_p1>
		<pcr_primer_p2>CAATCATTGATAGAGTTGGATGT</pcr_primer_p2>
		<pcr_amplicon_size>417</pcr_amplicon_size>
		<canonical_amplicon>GACTGATTACAGGCTCCATCTCAAAAACATCCAAATTATTTTAAACCAACTCAGATTGAGTCAAAAACGGATTGAAAACGGTCCAAGAACTAGGTAACTGGTCTACGGTATCTGCATTAAAAAAATTTTCTGAAAATTCCTGGGTTTTCTGGTATTCCACATTACTGCGAGACACCTATTTTTCACGTTTTCAGTACAAAAACTGGCCAATAAGGGGTGTTTTCCGAAAGCGGCAAAAATAGGAATTTTAAAAAAATTAGGTGAACGTATAGTTTTCAATTTATATTCAAAGTTTTCAAAGTGATACGAAACTTGAAATCCGAGTTCCAGACTCCTGAAAATGCTAAAAATCAACTGTAAATTACTTTTCACAAATCTCATTGACCTGTACTATACATCCAACTCTATCAATGATTG</canonical_amplicon>
		<polymorphic_amplicon>GACTGATTACAGGCTCCATCTCAAAAACATCCAAATTATTTTAAACCAACTCARATTGAGTCAAAAACGGATTGAAAACGGTCCAAGAACTAGGTAACTGGTCTACGGTATCTGCATTAAAAAAATTTTCTGAAAATTCCTGGGTTTTCTGGTATTCCACATTACTGCGAGACACCTATTTTTCACGTTTTCAGTACAAAAACTGGCCAATAAGGGGTGTTTTCCGAAAGCGGCAAAAATAGGAATTTTAAAAAAATTAGGTGAACGTATAGTTTTCAATTTATATTCAAAGTTTTCAAAGTGATACGAAACTTGAAATCCGAGTTCCAGACTCCTGAAAATGCTAAAAATCAACTGTAAATTACTTTTCACAAATCTCATTGACCTGTACTATACATCCAACTCTATCAATGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb953</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1437165</contig_pos>
        <strand></strand>
        <context>TAtctgcatt[A/C]aaaaaatttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGATTGAAAACGGTCCAAGAACTAGGTAACTGGTCTACGGTATCTGCATT</left_flank>
        <right_flank>AAAAAATTTTCTGAAAATTCCTGGGTTTTCTGGTATTCCACATTACTGCG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGGGGCCGACTTGATTCTTGATATGAAGAAAAATGATGAATGAATTATGACAAATGAGAGATCATTCCAGTAAAACTTCTCTTCCTCCCAGGCTCTCACGAATTGGAATTTCTGATACATTGGTTAGGTATCGGACCATTCCAAACTGTTCCAGATGTTCTGAAACTTTCCATCATAGAGATAAAGACTATTTTTCCTAGTTAGGTCACTTCTGGGATAGATGACCCTGGGTTTTTCCAGACCACTGAGCTTATTAAAGGACGGTATTCGTCATTCAAGGTTGTCTTTGGACCCTCATTGTTCTCTACTCAGTGTGAAACACAGCTGAATGTGCTCTTTAAATCTACAAAGATGTACTAATGGTAATTTCAGGATGGGCAGACTGATTACAGGCTCCATCTCAAAAACATCCAAATTATTTTAAACCAACTCAGATTGAGTCAAAAACGGATTGAAAACGGTCCAAGAACTAGGTAACTGGTCTACGGTATCTGCATTAAAAAAATTTTCTGAAAATTCCTGGGTTTTCTGGTATTCCACATTACTGCGAGACACCTATTTTTCACGTTTTCAGTACAAAAACTGGCCAATAAGGGGTGTTTTCCGAAAGCGGCAAAAATAGGAATTTTAAAAAAATTAGGTGAACGTATAGTTTTCAATTTATATTCAAAGTTTTCAAAGTGATACGAAACTTGAAATCCGAGTTCCAGACTCCTGAAAATGCTAAAAATCAACTGTAAATTACTTTTCACAAATCTCATTGACCTGTACTATACATCCAACTCTATCAATGATTGCCCTTTTGTTTATCTGGTATCTCCATAGACCCTCCCAGCCCATATTCTCGCAGATCATAAAATTTTCACTAACACATGCCATCATTATCCTTCAATATCTTTCAAAACCATTTTCCTTGTTCTTGGGCCCCTTTCTCCCCAGTGGCTCCCAAAAGTGCAAACCACCCTCCGTCCGAAACGTATACACATTTCACTCCCTCTC</canonical>
            <polymorphic>GAGGGGCCGACTTGATTCTTGATATGAAGAAAAATGATGAATGAATTATGACAAATGAGAGATCATTCCAGTAAAACTTCTCTTCCTCCCAGGCTCTCACGAATTGGAATTTCTGATACATTGGTTAGGTATCGGACCATTCCAAACTGTTCCAGATGTTCTGAAACTTTCCATCATAGAGATAAAGACTATTTTTCCTAGTTAGGTCACTTCTGGGATAGATGACCCTGGGTTTTTCCAGACCACTGAGCTTATTAAAGGACGGTATTCGTCATTCAAGGTTGTCTTTGGACCCTCATTGTTCTCTACTCAGTGTGAAACACAGCTGAATGTGCTCTTTAAATCTACAAAGATGTACTAATGGTAATTTCAGGATGGGCAGACTGATTACAGGCTCCATCTCAAAAACATCCAAATTATTTTAAACCAACTCAGATTGAGTCAAAAACGGATTGAAAACGGTCCAAGAACTAGGTAACTGGTCTACGGTATCTGCATTMAAAAAATTTTCTGAAAATTCCTGGGTTTTCTGGTATTCCACATTACTGCGAGACACCTATTTTTCACGTTTTCAGTACAAAAACTGGCCAATAAGGGGTGTTTTCCGAAAGCGGCAAAAATAGGAATTTTAAAAAAATTAGGTGAACGTATAGTTTTCAATTTATATTCAAAGTTTTCAAAGTGATACGAAACTTGAAATCCGAGTTCCAGACTCCTGAAAATGCTAAAAATCAACTGTAAATTACTTTTCACAAATCTCATTGACCTGTACTATACATCCAACTCTATCAATGATTGCCCTTTTGTTTATCTGGTATCTCCATAGACCCTCCCAGCCCATATTCTCGCAGATCATAAAATTTTCACTAACACATGCCATCATTATCCTTCAATATCTTTCAAAACCATTTTCCTTGTTCTTGGGCCCCTTTCTCCCCAGTGGCTCCCAAAAGTGCAAACCACCCTCCGTCCGAAACGTATACACATTTCACTCCCTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>371 255 131 84 83 76</canonical_bands>
                <polymorphic_bands>371 255 207 84 83</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTCAAAAACGGATTGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CAATCATTGATAGAGTTGGATGT</pcr_primer_p2>
		<pcr_amplicon_size>359</pcr_amplicon_size>
		<canonical_amplicon>AGTCAAAAACGGATTGAAAACGGTCCAAGAACTAGGTAACTGGTCTACGGTATCTGCATTAAAAAAATTTTCTGAAAATTCCTGGGTTTTCTGGTATTCCACATTACTGCGAGACACCTATTTTTCACGTTTTCAGTACAAAAACTGGCCAATAAGGGGTGTTTTCCGAAAGCGGCAAAAATAGGAATTTTAAAAAAATTAGGTGAACGTATAGTTTTCAATTTATATTCAAAGTTTTCAAAGTGATACGAAACTTGAAATCCGAGTTCCAGACTCCTGAAAATGCTAAAAATCAACTGTAAATTACTTTTCACAAATCTCATTGACCTGTACTATACATCCAACTCTATCAATGATTG</canonical_amplicon>
		<polymorphic_amplicon>AGTCAAAAACGGATTGAAAACGGTCCAAGAACTAGGTAACTGGTCTACGGTATCTGCATTMAAAAAATTTTCTGAAAATTCCTGGGTTTTCTGGTATTCCACATTACTGCGAGACACCTATTTTTCACGTTTTCAGTACAAAAACTGGCCAATAAGGGGTGTTTTCCGAAAGCGGCAAAAATAGGAATTTTAAAAAAATTAGGTGAACGTATAGTTTTCAATTTATATTCAAAGTTTTCAAAGTGATACGAAACTTGAAATCCGAGTTCCAGACTCCTGAAAATGCTAAAAATCAACTGTAAATTACTTTTCACAAATCTCATTGACCTGTACTATACATCCAACTCTATCAATGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb956</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1437267</contig_pos>
        <strand></strand>
        <context>taaggggtgt[T/C]ttccgaaagc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GACACCTATTTTTCACGTTTTCAGTACAAAAACTGGCCAATAAGGGGTGT</left_flank>
        <right_flank>TTCCGAAAGCGGCAAAAATAGGAATTTTAAAAAAATTAGGTGAACGTATA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGGAATTTCTGATACATTGGTTAGGTATCGGACCATTCCAAACTGTTCCAGATGTTCTGAAACTTTCCATCATAGAGATAAAGACTATTTTTCCTAGTTAGGTCACTTCTGGGATAGATGACCCTGGGTTTTTCCAGACCACTGAGCTTATTAAAGGACGGTATTCGTCATTCAAGGTTGTCTTTGGACCCTCATTGTTCTCTACTCAGTGTGAAACACAGCTGAATGTGCTCTTTAAATCTACAAAGATGTACTAATGGTAATTTCAGGATGGGCAGACTGATTACAGGCTCCATCTCAAAAACATCCAAATTATTTTAAACCAACTCAGATTGAGTCAAAAACGGATTGAAAACGGTCCAAGAACTAGGTAACTGGTCTACGGTATCTGCATTAAAAAAATTTTCTGAAAATTCCTGGGTTTTCTGGTATTCCACATTACTGCGAGACACCTATTTTTCACGTTTTCAGTACAAAAACTGGCCAATAAGGGGTGTTTTCCGAAAGCGGCAAAAATAGGAATTTTAAAAAAATTAGGTGAACGTATAGTTTTCAATTTATATTCAAAGTTTTCAAAGTGATACGAAACTTGAAATCCGAGTTCCAGACTCCTGAAAATGCTAAAAATCAACTGTAAATTACTTTTCACAAATCTCATTGACCTGTACTATACATCCAACTCTATCAATGATTGCCCTTTTGTTTATCTGGTATCTCCATAGACCCTCCCAGCCCATATTCTCGCAGATCATAAAATTTTCACTAACACATGCCATCATTATCCTTCAATATCTTTCAAAACCATTTTCCTTGTTCTTGGGCCCCTTTCTCCCCAGTGGCTCCCAAAAGTGCAAACCACCCTCCGTCCGAAACGTATACACATTTCACTCCCTCTCTCTCTCTTTTCGAATCCCAAAAAACCTCCTCAACCAGACTCTCAAGTGTCAGAGAGAGAGGGAGTGGGTCCCTCCCCTGAAGGGACCCCTCGGGGTCGTTTC</canonical>
            <polymorphic>ATTGGAATTTCTGATACATTGGTTAGGTATCGGACCATTCCAAACTGTTCCAGATGTTCTGAAACTTTCCATCATAGAGATAAAGACTATTTTTCCTAGTTAGGTCACTTCTGGGATAGATGACCCTGGGTTTTTCCAGACCACTGAGCTTATTAAAGGACGGTATTCGTCATTCAAGGTTGTCTTTGGACCCTCATTGTTCTCTACTCAGTGTGAAACACAGCTGAATGTGCTCTTTAAATCTACAAAGATGTACTAATGGTAATTTCAGGATGGGCAGACTGATTACAGGCTCCATCTCAAAAACATCCAAATTATTTTAAACCAACTCAGATTGAGTCAAAAACGGATTGAAAACGGTCCAAGAACTAGGTAACTGGTCTACGGTATCTGCATTAAAAAAATTTTCTGAAAATTCCTGGGTTTTCTGGTATTCCACATTACTGCGAGACACCTATTTTTCACGTTTTCAGTACAAAAACTGGCCAATAAGGGGTGTYTTCCGAAAGCGGCAAAAATAGGAATTTTAAAAAAATTAGGTGAACGTATAGTTTTCAATTTATATTCAAAGTTTTCAAAGTGATACGAAACTTGAAATCCGAGTTCCAGACTCCTGAAAATGCTAAAAATCAACTGTAAATTACTTTTCACAAATCTCATTGACCTGTACTATACATCCAACTCTATCAATGATTGCCCTTTTGTTTATCTGGTATCTCCATAGACCCTCCCAGCCCATATTCTCGCAGATCATAAAATTTTCACTAACACATGCCATCATTATCCTTCAATATCTTTCAAAACCATTTTCCTTGTTCTTGGGCCCCTTTCTCCCCAGTGGCTCCCAAAAGTGCAAACCACCCTCCGTCCGAAACGTATACACATTTCACTCCCTCTCTCTCTCTTTTCGAATCCCAAAAAACCTCCTCAACCAGACTCTCAAGTGTCAGAGAGAGAGGGAGTGGGTCCCTCCCCTGAAGGGACCCCTCGGGGTCGTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGGTCCAAGAACTAGGTAAC</pcr_primer_p1>
		<pcr_primer_p2>CAATCATTGATAGAGTTGGATGT</pcr_primer_p2>
		<pcr_amplicon_size>340</pcr_amplicon_size>
		<canonical_amplicon>ACGGTCCAAGAACTAGGTAACTGGTCTACGGTATCTGCATTAAAAAAATTTTCTGAAAATTCCTGGGTTTTCTGGTATTCCACATTACTGCGAGACACCTATTTTTCACGTTTTCAGTACAAAAACTGGCCAATAAGGGGTGTTTTCCGAAAGCGGCAAAAATAGGAATTTTAAAAAAATTAGGTGAACGTATAGTTTTCAATTTATATTCAAAGTTTTCAAAGTGATACGAAACTTGAAATCCGAGTTCCAGACTCCTGAAAATGCTAAAAATCAACTGTAAATTACTTTTCACAAATCTCATTGACCTGTACTATACATCCAACTCTATCAATGATTG</canonical_amplicon>
		<polymorphic_amplicon>ACGGTCCAAGAACTAGGTAACTGGTCTACGGTATCTGCATTAAAAAAATTTTCTGAAAATTCCTGGGTTTTCTGGTATTCCACATTACTGCGAGACACCTATTTTTCACGTTTTCAGTACAAAAACTGGCCAATAAGGGGTGTYTTCCGAAAGCGGCAAAAATAGGAATTTTAAAAAAATTAGGTGAACGTATAGTTTTCAATTTATATTCAAAGTTTTCAAAGTGATACGAAACTTGAAATCCGAGTTCCAGACTCCTGAAAATGCTAAAAATCAACTGTAAATTACTTTTCACAAATCTCATTGACCTGTACTATACATCCAACTCTATCAATGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb957</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1439703</contig_pos>
        <strand>+</strand>
        <context>GAGCAATAGG[G/T]GAGCAATAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGGGAAATTTAATTCTCCTATTTTTCATTAAAATGAGAATGAGCAATAGG</left_flank>
        <right_flank>GAGCAATAGTGAGCTACAGATAATTTTCAAGCTCCGCCCACTTTTTTTGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGGCCTTTCTATTACAGGTTTTACGTTATCAGAATTTCAGCTTTTTAGGAGAACCTTGTTAAAAAAACGTTATTTTGATTTAGACAATTTTAAAAAAATTTTGAGAAAAATGTTTTCAAAAGGATTGTTTAGACTTTAGAATTAAACATTTTGGAATTTTTAGAATTTACGAAATTTATGTTTTCTAGGTTTTTTAGATTTTCAAATATTCAGACCCCTCGCAGAATTTTTCTGAGTGTTCAAAAAATTTTTGATCTACGAAATTCGTTTTTTTGTTTTCCCGATAGTTCCAATTTTTCCCCACCCACTCCAAATTTTTGTGGGGAACATAGACCGTATTTTCCACTCATTAATTTTTTTCAAAAACAAAATTTTGAAAAAAAAATTGGAAAAAAATGAGTCAGACCTATTTTTCGTGTTTTCCAGAGAATTTCAATTTTCCTCTCGGTGGGAAATTTAATTCTCCTATTTTTCATTAAAATGAGAATGAGCAATAGGTGAGCAATAGTGAGCTACAGATAATTTTCAAGCTCCGCCCACTTTTTTTGGATTGGAAAAATTGTTAAAAATTAAAAAAAATTTCAATTAAAAAAATGCGATTGTAGGTAAATGGACCCTGTTTAATTCAAATATCTTGTTTATTTTCTATGATTCCCAGCTCCTAAAAGTGTAATCAAACGTAATCTGAATGTTCCCCGAACAGGTGATAAATAATCCAAATCATATGCCTCCTTTTCTCGTTTTTTGGTCATTTTTCTCCGCCTAATCCGGTCCGCCCGTTTATGTTTTTTTTTCGTCATCACCTGACCCCGTAGATTTTCTTCTGAATTCAAATTATCAGAAGTCAACCATTCCACCTGCTTGAATTAAGACTTTGTTAACTCTGTTGAACTTTTTAGGAAGTCCTGAGATTCAAAAACCCTTAAACTCCTGCTACCGCAAACACTCTTAATAGAGCGTCACCCAAACTGTCAACTTCGAGCCTATGTATCTCATTTT</canonical>
            <polymorphic>GAGGCCTTTCTATTACAGGTTTTACGTTATCAGAATTTCAGCTTTTTAGGAGAACCTTGTTAAAAAAACGTTATTTTGATTTAGACAATTTTAAAAAAATTTTGAGAAAAATGTTTTCAAAAGGATTGTTTAGACTTTAGAATTAAACATTTTGGAATTTTTAGAATTTACGAAATTTATGTTTTCTAGGTTTTTTAGATTTTCAAATATTCAGACCCCTCGCAGAATTTTTCTGAGTGTTCAAAAAATTTTTGATCTACGAAATTCGTTTTTTTGTTTTCCCGATAGTTCCAATTTTTCCCCACCCACTCCAAATTTTTGTGGGGAACATAGACCGTATTTTCCACTCATTAATTTTTTTCAAAAACAAAATTTTGAAAAAAAAATTGGAAAAAAATGAGTCAGACCTATTTTTCGTGTTTTCCAGAGAATTTCAATTTTCCTCTCGGTGGGAAATTTAATTCTCCTATTTTTCATTAAAATGAGAATGAGCAATAGGKGAGCAATAGTGAGCTACAGATAATTTTCAAGCTCCGCCCACTTTTTTTGGATTGGAAAAATTGTTAAAAATTAAAAAAAATTTCAATTAAAAAAATGCGATTGTAGGTAAATGGACCCTGTTTAATTCAAATATCTTGTTTATTTTCTATGATTCCCAGCTCCTAAAAGTGTAATCAAACGTAATCTGAATGTTCCCCGAACAGGTGATAAATAATCCAAATCATATGCCTCCTTTTCTCGTTTTTTGGTCATTTTTCTCCGCCTAATCCGGTCCGCCCGTTTATGTTTTTTTTTCGTCATCACCTGACCCCGTAGATTTTCTTCTGAATTCAAATTATCAGAAGTCAACCATTCCACCTGCTTGAATTAAGACTTTGTTAACTCTGTTGAACTTTTTAGGAAGTCCTGAGATTCAAAAACCCTTAAACTCCTGCTACCGCAAACACTCTTAATAGAGCGTCACCCAAACTGTCAACTTCGAGCCTATGTATCTCATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>239 131 96 89 73 65 54 50 37 36 32 29 23 17 15 10 4</canonical_bands>
                <polymorphic_bands>239 131 96 89 73 65 60 54 37 36 32 29 23 17 15 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTATTTTCCACTCATTAATTTT</pcr_primer_p1>
		<pcr_primer_p2>AGGGTCCATTTACCTACAATC</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>CGTATTTTCCACTCATTAATTTTTTTCAAAAACAAAATTTTGAAAAAAAAATTGGAAAAAAATGAGTCAGACCTATTTTTCGTGTTTTCCAGAGAATTTCAATTTTCCTCTCGGTGGGAAATTTAATTCTCCTATTTTTCATTAAAATGAGAATGAGCAATAGGTGAGCAATAGTGAGCTACAGATAATTTTCAAGCTCCGCCCACTTTTTTTGGATTGGAAAAATTGTTAAAAATTAAAAAAAATTTCAATTAAAAAAATGCGATTGTAGGTAAATGGACCCT</canonical_amplicon>
		<polymorphic_amplicon>CGTATTTTCCACTCATTAATTTTTTTCAAAAACAAAATTTTGAAAAAAAAATTGGAAAAAAATGAGTCAGACCTATTTTTCGTGTTTTCCAGAGAATTTCAATTTTCCTCTCGGTGGGAAATTTAATTCTCCTATTTTTCATTAAAATGAGAATGAGCAATAGGKGAGCAATAGTGAGCTACAGATAATTTTCAAGCTCCGCCCACTTTTTTTGGATTGGAAAAATTGTTAAAAATTAAAAAAAATTTCAATTAAAAAAATGCGATTGTAGGTAAATGGACCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb958</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1458394</contig_pos>
        <strand>+</strand>
        <context>TATGGAACTC[A/G]ATGATGGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGTTTCAAGACCCCGGTGTGCCATTATGGTATGATATTGTATGGAACTC</left_flank>
        <right_flank>ATGATGGAAAAGAAGAAAAAGGAGGGCCCGAAAAGAAAAATAGTTGTGTC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATAGAGAAATAGAATGAATCTGCTGCTGACTCTTCCACCTTTTAATTCAAATCGATTATATATTTCTACTTTAAGGACTTCCGTCTAATCACATCATGTAACGAGGTCGGGGCTGGCAAAATTAGAATCAAATTAATATTTTTCTCACGATCAGTTCTCAGTTTTCAGGTGATTGATTTTCTTAAGAGCTAATTGTAAGTATTAGATCCAAACTCTCCAAGGCGCCCGATTTGAACCTAGAAGATGGGCTCGCTTGCAAGCTCTTCAGGGCTCAATTCTTCAAAAAAGTTGTCAACTATAAAAATGAAGGTCTGATTCCGTTCAATGTACTCAGAAAACTCCACACTTCCAGAATCTTCTGGAACATTTTTATTCTTGCAGGTAGTAAGACTCAAATCCCTCGTCTCCCTTCATAGGCCCAGTTTATTTTTTAAAGTGTTTTTGCAAGTGTTTCAAGACCCCGGTGTGCCATTATGGTATGATATTGTATGGAACTCGATGATGGAAAAGAAGAAAAAGGAGGGCCCGAAAAGAAAAATAGTTGTGTCAATAGACAAACAAGAAGACACGGGGAGAGAAAGAGAGTTTGTGTATTTGGATTGCAATCCCCCCGGAAACGTATTGTGCTGTGACTGAGAGAGAGAGAGCCTTATGACAATCGGAAGTGGATGGTTGAACAGCAAGAAAAATCGATAATCAACTAAAAAAACTTACATAGCAATAATTATTGTTAACTGTCATGTTATCGATTTTTTTTAATTCGAGTTGAGTAAAAAGTTAGAAGAGCGTGATGATGGGTAACAGAATGGAGGGATGATGACCATGTAATAGAAAAACAAAGAGAGGATAATTTTGTTTTTGTACATTTCGGGTATCTATTTTTAGAGACATTCATTGTATATACAGAAAAAAAAACACAAATGTTGTGATCACTGACTCTGATTTTTTGATTTAAACACAATACCAAGACAATGCCTAAAAGTCCTTGGTCCCTTATT</canonical>
            <polymorphic>AGATAGAGAAATAGAATGAATCTGCTGCTGACTCTTCCACCTTTTAATTCAAATCGATTATATATTTCTACTTTAAGGACTTCCGTCTAATCACATCATGTAACGAGGTCGGGGCTGGCAAAATTAGAATCAAATTAATATTTTTCTCACGATCAGTTCTCAGTTTTCAGGTGATTGATTTTCTTAAGAGCTAATTGTAAGTATTAGATCCAAACTCTCCAAGGCGCCCGATTTGAACCTAGAAGATGGGCTCGCTTGCAAGCTCTTCAGGGCTCAATTCTTCAAAAAAGTTGTCAACTATAAAAATGAAGGTCTGATTCCGTTCAATGTACTCAGAAAACTCCACACTTCCAGAATCTTCTGGAACATTTTTATTCTTGCAGGTAGTAAGACTCAAATCCCTCGTCTCCCTTCATAGGCCCAGTTTATTTTTTAAAGTGTTTTTGCAAGTGTTTCAAGACCCCGGTGTGCCATTATGGTATGATATTGTATGGAACTCRATGATGGAAAAGAAGAAAAAGGAGGGCCCGAAAAGAAAAATAGTTGTGTCAATAGACAAACAAGAAGACACGGGGAGAGAAAGAGAGTTTGTGTATTTGGATTGCAATCCCCCCGGAAACGTATTGTGCTGTGACTGAGAGAGAGAGAGCCTTATGACAATCGGAAGTGGATGGTTGAACAGCAAGAAAAATCGATAATCAACTAAAAAAACTTACATAGCAATAATTATTGTTAACTGTCATGTTATCGATTTTTTTTAATTCGAGTTGAGTAAAAAGTTAGAAGAGCGTGATGATGGGTAACAGAATGGAGGGATGATGACCATGTAATAGAAAAACAAAGAGAGGATAATTTTGTTTTTGTACATTTCGGGTATCTATTTTTAGAGACATTCATTGTATATACAGAAAAAAAAACACAAATGTTGTGATCACTGACTCTGATTTTTTGATTTAAACACAATACCAAGACAATGCCTAAAAGTCCTTGGTCCCTTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>444 236 194 56 55 15</canonical_bands>
                <polymorphic_bands>638 236 56 55 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCTGGAACATTTTTATTCTTG</pcr_primer_p1>
		<pcr_primer_p2>CAATCCAAATACACAAACTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTTCTGGAACATTTTTATTCTTGCAGGTAGTAAGACTCAAATCCCTCGTCTCCCTTCATAGGCCCAGTTTATTTTTTAAAGTGTTTTTGCAAGTGTTTCAAGACCCCGGTGTGCCATTATGGTATGATATTGTATGGAACTCGATGATGGAAAAGAAGAAAAAGGAGGGCCCGAAAAGAAAAATAGTTGTGTCAATAGACAAACAAGAAGACACGGGGAGAGAAAGAGAGTTTGTGTATTTGGATTG</canonical_amplicon>
		<polymorphic_amplicon>CTTCTGGAACATTTTTATTCTTGCAGGTAGTAAGACTCAAATCCCTCGTCTCCCTTCATAGGCCCAGTTTATTTTTTAAAGTGTTTTTGCAAGTGTTTCAAGACCCCGGTGTGCCATTATGGTATGATATTGTATGGAACTCRATGATGGAAAAGAAGAAAAAGGAGGGCCCGAAAAGAAAAATAGTTGTGTCAATAGACAAACAAGAAGACACGGGGAGAGAAAGAGAGTTTGTGTATTTGGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb959</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1458315</contig_pos>
        <strand>+</strand>
        <context>CTTCATAGGC[C/T]CAGTTTATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTATTCTTGCAGGTAGTAAGACTCAAATCCCTCGTCTCCCTTCATAGGC</left_flank>
        <right_flank>CAGTTTATTTTTTAAAGTGTTTTTGCAAGTGTTTCAAGACCCCGGTGTGC</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGAGCTGGGAAATGGGGGTGATGACTACGCTCTCTGGATAGAAGGCGTGGCGGGTGGAGAAGAAGCACATGATGACATAGATAGAGAAATAGAATGAATCTGCTGCTGACTCTTCCACCTTTTAATTCAAATCGATTATATATTTCTACTTTAAGGACTTCCGTCTAATCACATCATGTAACGAGGTCGGGGCTGGCAAAATTAGAATCAAATTAATATTTTTCTCACGATCAGTTCTCAGTTTTCAGGTGATTGATTTTCTTAAGAGCTAATTGTAAGTATTAGATCCAAACTCTCCAAGGCGCCCGATTTGAACCTAGAAGATGGGCTCGCTTGCAAGCTCTTCAGGGCTCAATTCTTCAAAAAAGTTGTCAACTATAAAAATGAAGGTCTGATTCCGTTCAATGTACTCAGAAAACTCCACACTTCCAGAATCTTCTGGAACATTTTTATTCTTGCAGGTAGTAAGACTCAAATCCCTCGTCTCCCTTCATAGGCCCAGTTTATTTTTTAAAGTGTTTTTGCAAGTGTTTCAAGACCCCGGTGTGCCATTATGGTATGATATTGTATGGAACTCGATGATGGAAAAGAAGAAAAAGGAGGGCCCGAAAAGAAAAATAGTTGTGTCAATAGACAAACAAGAAGACACGGGGAGAGAAAGAGAGTTTGTGTATTTGGATTGCAATCCCCCCGGAAACGTATTGTGCTGTGACTGAGAGAGAGAGAGCCTTATGACAATCGGAAGTGGATGGTTGAACAGCAAGAAAAATCGATAATCAACTAAAAAAACTTACATAGCAATAATTATTGTTAACTGTCATGTTATCGATTTTTTTTAATTCGAGTTGAGTAAAAAGTTAGAAGAGCGTGATGATGGGTAACAGAATGGAGGGATGATGACCATGTAATAGAAAAACAAAGAGAGGATAATTTTGTTTTTGTACATTTCGGGTATCTATTTTTAGAGACATTCATTGTATATACAGAAAAAAAAACACA</canonical>
            <polymorphic>TAGAGCTGGGAAATGGGGGTGATGACTACGCTCTCTGGATAGAAGGCGTGGCGGGTGGAGAAGAAGCACATGATGACATAGATAGAGAAATAGAATGAATCTGCTGCTGACTCTTCCACCTTTTAATTCAAATCGATTATATATTTCTACTTTAAGGACTTCCGTCTAATCACATCATGTAACGAGGTCGGGGCTGGCAAAATTAGAATCAAATTAATATTTTTCTCACGATCAGTTCTCAGTTTTCAGGTGATTGATTTTCTTAAGAGCTAATTGTAAGTATTAGATCCAAACTCTCCAAGGCGCCCGATTTGAACCTAGAAGATGGGCTCGCTTGCAAGCTCTTCAGGGCTCAATTCTTCAAAAAAGTTGTCAACTATAAAAATGAAGGTCTGATTCCGTTCAATGTACTCAGAAAACTCCACACTTCCAGAATCTTCTGGAACATTTTTATTCTTGCAGGTAGTAAGACTCAAATCCCTCGTCTCCCTTCATAGGCYCAGTTTATTTTTTAAAGTGTTTTTGCAAGTGTTTCAAGACCCCGGTGTGCCATTATGGTATGATATTGTATGGAACTCGATGATGGAAAAGAAGAAAAAGGAGGGCCCGAAAAGAAAAATAGTTGTGTCAATAGACAAACAAGAAGACACGGGGAGAGAAAGAGAGTTTGTGTATTTGGATTGCAATCCCCCCGGAAACGTATTGTGCTGTGACTGAGAGAGAGAGAGCCTTATGACAATCGGAAGTGGATGGTTGAACAGCAAGAAAAATCGATAATCAACTAAAAAAACTTACATAGCAATAATTATTGTTAACTGTCATGTTATCGATTTTTTTTAATTCGAGTTGAGTAAAAAGTTAGAAGAGCGTGATGATGGGTAACAGAATGGAGGGATGATGACCATGTAATAGAAAAACAAAGAGAGGATAATTTTGTTTTTGTACATTTCGGGTATCTATTTTTAGAGACATTCATTGTATATACAGAAAAAAAAACACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>497 397 106</canonical_bands>
                <polymorphic_bands>603 397</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>498 395 107</canonical_bands>
                <polymorphic_bands>605 395</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>272 188 147 123 107 76 60 12 10 5</canonical_bands>
                <polymorphic_bands>272 254 188 123 76 60 12 10 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCTGGAACATTTTTATTCTTG</pcr_primer_p1>
		<pcr_primer_p2>CAATCCAAATACACAAACTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTTCTGGAACATTTTTATTCTTGCAGGTAGTAAGACTCAAATCCCTCGTCTCCCTTCATAGGCCCAGTTTATTTTTTAAAGTGTTTTTGCAAGTGTTTCAAGACCCCGGTGTGCCATTATGGTATGATATTGTATGGAACTCGATGATGGAAAAGAAGAAAAAGGAGGGCCCGAAAAGAAAAATAGTTGTGTCAATAGACAAACAAGAAGACACGGGGAGAGAAAGAGAGTTTGTGTATTTGGATTG</canonical_amplicon>
		<polymorphic_amplicon>CTTCTGGAACATTTTTATTCTTGCAGGTAGTAAGACTCAAATCCCTCGTCTCCCTTCATAGGCYCAGTTTATTTTTTAAAGTGTTTTTGCAAGTGTTTCAAGACCCCGGTGTGCCATTATGGTATGATATTGTATGGAACTCGATGATGGAAAAGAAGAAAAAGGAGGGCCCGAAAAGAAAAATAGTTGTGTCAATAGACAAACAAGAAGACACGGGGAGAGAAAGAGAGTTTGTGTATTTGGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb984</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1460304</contig_pos>
        <strand>+</strand>
        <context>TGACGACTTG[A/G]CAGTCATCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGCCGAAGAGGATGTTGTGTTCGTTGGGGAGGTATTGGTTGACGACTTG</left_flank>
        <right_flank>CAGTCATCTGAAGCGGACCCGCACGACATAGTGGGTGGAGAACGAAGTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTATGATCAATAGGACTCGTTGGAGCACTGGCTGAAGTTGTTGGTCTTCTAAGATAGTTGTCATCTAGGTCGGCCATCGGCGAATCATCTCCATCCTTCTGTTGCAGAGAGCTCACCGAATAGGCCGGAAAGCCGGGCGGTGGTGCAGTACGAACCGCCGAGGATGGTGGTGGTGCTTGAAGGATGCGTCGTTGCGATCGAAGCGGCACCACCACCCCAGAAGACGTTTTAAGGAGGAGATGTGGAATCTTTTCACGACAAATATCCTCTGGAGACGACGAGCTTCGACGCTTCTTGACTAGTCCCGTGGTGATAGAGGATGTGATGTTGTGTGCAGTGATGGGTGTCAAAGGGAATCCTAATGGAAAACCGCCTGAGGTTGTTGACTCCTCCTCATCGTCCTCTTCTTCTTCTTCTTCTTCTGTATCCGTGGATGGTGCTGACTGAAAAGCCGAAGAGGATGTTGTGTTCGTTGGGGAGGTATTGGTTGACGACTTGACAGTCATCTGAAGCGGACCCGCACGACATAGTGGGTGGAGAACGAAGTCATCGTCGTCGTCGTCGGCGACAACGAAGTCGCCACGATCCTCCCGACGAATTGCTTCAGAGAGTCGCCGCCTCCACAGTTCATCGTCGTCCTCGTCGTCCAATTGTTTCTTCAGAACATCTTCTTCTTTTTTGTCTACATCTTCAGGGCACGTGTTCATCTTGATGACGTCACTAGAGAAATACGGTACAGGGCTATAGAGAGTGAGAGAGGGATAGAGAGAGACTTGGAAAAACGAGAAAAGAAGAGAGAGAGAGAGCGGTTTCTTTTCCAACCCCAAAAAACGGGATCGGAAGTGATAGAGAGAAAATACTGTCGAGAGGGGAAGAGAAAAAGAGAAAGACCACCCCAACTGGATCTAAAAATAGCCAAGCAACCAAATAAAAGCGCGTCTTGCCTCTCCTCTCGTTCTCTCTCGACCTACCCGCCCGGCGGGGATCATAGATAGAGAA</canonical>
            <polymorphic>TCTATGATCAATAGGACTCGTTGGAGCACTGGCTGAAGTTGTTGGTCTTCTAAGATAGTTGTCATCTAGGTCGGCCATCGGCGAATCATCTCCATCCTTCTGTTGCAGAGAGCTCACCGAATAGGCCGGAAAGCCGGGCGGTGGTGCAGTACGAACCGCCGAGGATGGTGGTGGTGCTTGAAGGATGCGTCGTTGCGATCGAAGCGGCACCACCACCCCAGAAGACGTTTTAAGGAGGAGATGTGGAATCTTTTCACGACAAATATCCTCTGGAGACGACGAGCTTCGACGCTTCTTGACTAGTCCCGTGGTGATAGAGGATGTGATGTTGTGTGCAGTGATGGGTGTCAAAGGGAATCCTAATGGAAAACCGCCTGAGGTTGTTGACTCCTCCTCATCGTCCTCTTCTTCTTCTTCTTCTTCTGTATCCGTGGATGGTGCTGACTGAAAAGCCGAAGAGGATGTTGTGTTCGTTGGGGAGGTATTGGTTGACGACTTGRCAGTCATCTGAAGCGGACCCGCACGACATAGTGGGTGGAGAACGAAGTCATCGTCGTCGTCGTCGGCGACAACGAAGTCGCCACGATCCTCCCGACGAATTGCTTCAGAGAGTCGCCGCCTCCACAGTTCATCGTCGTCCTCGTCGTCCAATTGTTTCTTCAGAACATCTTCTTCTTTTTTGTCTACATCTTCAGGGCACGTGTTCATCTTGATGACGTCACTAGAGAAATACGGTACAGGGCTATAGAGAGTGAGAGAGGGATAGAGAGAGACTTGGAAAAACGAGAAAAGAAGAGAGAGAGAGAGCGGTTTCTTTTCCAACCCCAAAAAACGGGATCGGAAGTGATAGAGAGAAAATACTGTCGAGAGGGGAAGAGAAAAAGAGAAAGACCACCCCAACTGGATCTAAAAATAGCCAAGCAACCAAATAAAAGCGCGTCTTGCCTCTCCTCTCGTTCTCTCTCGACCTACCCGCCCGGCGGGGATCATAGATAGAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>502 138 128 124 108</canonical_bands>
                <polymorphic_bands>626 138 128 108</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGTTGACTCCTCCTCATC</pcr_primer_p1>
		<pcr_primer_p2>TGAAGAAACAATTGGACGAC</pcr_primer_p2>
		<pcr_amplicon_size>283</pcr_amplicon_size>
		<canonical_amplicon>GTTGTTGACTCCTCCTCATCGTCCTCTTCTTCTTCTTCTTCTTCTGTATCCGTGGATGGTGCTGACTGAAAAGCCGAAGAGGATGTTGTGTTCGTTGGGGAGGTATTGGTTGACGACTTGACAGTCATCTGAAGCGGACCCGCACGACATAGTGGGTGGAGAACGAAGTCATCGTCGTCGTCGTCGGCGACAACGAAGTCGCCACGATCCTCCCGACGAATTGCTTCAGAGAGTCGCCGCCTCCACAGTTCATCGTCGTCCTCGTCGTCCAATTGTTTCTTCA</canonical_amplicon>
		<polymorphic_amplicon>GTTGTTGACTCCTCCTCATCGTCCTCTTCTTCTTCTTCTTCTTCTGTATCCGTGGATGGTGCTGACTGAAAAGCCGAAGAGGATGTTGTGTTCGTTGGGGAGGTATTGGTTGACGACTTGRCAGTCATCTGAAGCGGACCCGCACGACATAGTGGGTGGAGAACGAAGTCATCGTCGTCGTCGTCGGCGACAACGAAGTCGCCACGATCCTCCCGACGAATTGCTTCAGAGAGTCGCCGCCTCCACAGTTCATCGTCGTCCTCGTCGTCCAATTGTTTCTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb985</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1462514</contig_pos>
        <strand></strand>
        <context>AGATTTTTTA[A/G]TATCTTaaac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTGAAGGGAAAATTTTTGAAAAAAAAACAAACAATTCTAGATTTTTTA</left_flank>
        <right_flank>TATCTTAAACACTCTAACAGAAGGCTGCTCAACCCACCAACTTTGAGCCC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGGTTCCTGTAAAAGATATCAAATAATAATCAACTGATAAAATTTTTATCATAATATCAGCAACATTCTATCAGTTGACCACTTTCTGATATGTTTTACAGTAACCGAGATATTCGAGTTCAAAGTGGGCAGCTCATTTTTCCAACTCCCTAAAGTTCGAAAAATCAGAATGCAAAAAAAATTATTTTCAGCTCCAAAGAATTATTGTCTAGACACAAAAAATGTTTTGAAGGTCTTCTTCTCTTTTCTATTTTTGGAAATCGGAAAGAAACAACGAACAATATCTCAAGGGATTTGGGTATCAAGGATTATAGGATTTAGAAAAGCGGATTATCTTTCTTGGGGAGGGAGAGAAATCTAAAATTAATTTTCTAAAAAAGGGTTTTTCTCCAAAACAGTTCTTAACTTTGGTTAGAATTGAGCTAAAAATATGGTTTACATACTGTTTAGTTGAAGGGAAAATTTTTGAAAAAAAAACAAACAATTCTAGATTTTTTAATATCTTAAACACTCTAACAGAAGGCTGCTCAACCCACCAACTTTGAGCCCGTATATCTCAGTTCCTGTGAGAGATATCAAAAACTGGTCAATTGATAAAATATTGGTGATACTATGATTGATAAACATTTTGTCAGTTAAACACTTTTTGATATCTTTCACAGGAACCGAGATAAATGGGCTCAAAGTGGACGGTTTGGGTGGCCTTCTATTAGAGTGTTTACGGTACTTTTACTTTGAGCTCAATTATCTTGGTTGCTAGAAACCATACTAAAAAAGTTAACTGATAAAATGTTGGGGGTATTGTGATAAAAATTTTTGCTGTTGACAAATTTTTGACATCTCTTATAGGATTCGATATAATTGAGCATTTCAAAACGCGGAAGTGTGCCCCGCAGGTGTTTTTCTTCTTCTTGAGATTCATAAAGTAAGAAGAAAAGAAGAAGCTGAAGTGTGATCATTGATCCCCGAAAATGTGTTGTTTTCGCTGTTTTCTCTCTC</canonical>
            <polymorphic>TCGGTTCCTGTAAAAGATATCAAATAATAATCAACTGATAAAATTTTTATCATAATATCAGCAACATTCTATCAGTTGACCACTTTCTGATATGTTTTACAGTAACCGAGATATTCGAGTTCAAAGTGGGCAGCTCATTTTTCCAACTCCCTAAAGTTCGAAAAATCAGAATGCAAAAAAAATTATTTTCAGCTCCAAAGAATTATTGTCTAGACACAAAAAATGTTTTGAAGGTCTTCTTCTCTTTTCTATTTTTGGAAATCGGAAAGAAACAACGAACAATATCTCAAGGGATTTGGGTATCAAGGATTATAGGATTTAGAAAAGCGGATTATCTTTCTTGGGGAGGGAGAGAAATCTAAAATTAATTTTCTAAAAAAGGGTTTTTCTCCAAAACAGTTCTTAACTTTGGTTAGAATTGAGCTAAAAATATGGTTTACATACTGTTTAGTTGAAGGGAAAATTTTTGAAAAAAAAACAAACAATTCTAGATTTTTTARTATCTTAAACACTCTAACAGAAGGCTGCTCAACCCACCAACTTTGAGCCCGTATATCTCAGTTCCTGTGAGAGATATCAAAAACTGGTCAATTGATAAAATATTGGTGATACTATGATTGATAAACATTTTGTCAGTTAAACACTTTTTGATATCTTTCACAGGAACCGAGATAAATGGGCTCAAAGTGGACGGTTTGGGTGGCCTTCTATTAGAGTGTTTACGGTACTTTTACTTTGAGCTCAATTATCTTGGTTGCTAGAAACCATACTAAAAAAGTTAACTGATAAAATGTTGGGGGTATTGTGATAAAAATTTTTGCTGTTGACAAATTTTTGACATCTCTTATAGGATTCGATATAATTGAGCATTTCAAAACGCGGAAGTGTGCCCCGCAGGTGTTTTTCTTCTTCTTGAGATTCATAAAGTAAGAAGAAAAGAAGAAGCTGAAGTGTGATCATTGATCCCCGAAAATGTGTTGTTTTCGCTGTTTTCTCTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>365 221 142 132 94 38 8</canonical_bands>
                <polymorphic_bands>365 221 142 132 102 38</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACTGTTTAGTTGAAGGGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCAAGAAGAAGAAAAACACCTG</pcr_primer_p2>
		<pcr_amplicon_size>476</pcr_amplicon_size>
		<canonical_amplicon>ATACTGTTTAGTTGAAGGGAAAATTTTTGAAAAAAAAACAAACAATTCTAGATTTTTTAATATCTTAAACACTCTAACAGAAGGCTGCTCAACCCACCAACTTTGAGCCCGTATATCTCAGTTCCTGTGAGAGATATCAAAAACTGGTCAATTGATAAAATATTGGTGATACTATGATTGATAAACATTTTGTCAGTTAAACACTTTTTGATATCTTTCACAGGAACCGAGATAAATGGGCTCAAAGTGGACGGTTTGGGTGGCCTTCTATTAGAGTGTTTACGGTACTTTTACTTTGAGCTCAATTATCTTGGTTGCTAGAAACCATACTAAAAAAGTTAACTGATAAAATGTTGGGGGTATTGTGATAAAAATTTTTGCTGTTGACAAATTTTTGACATCTCTTATAGGATTCGATATAATTGAGCATTTCAAAACGCGGAAGTGTGCCCCGCAGGTGTTTTTCTTCTTCTTGA</canonical_amplicon>
		<polymorphic_amplicon>ATACTGTTTAGTTGAAGGGAAAATTTTTGAAAAAAAAACAAACAATTCTAGATTTTTTARTATCTTAAACACTCTAACAGAAGGCTGCTCAACCCACCAACTTTGAGCCCGTATATCTCAGTTCCTGTGAGAGATATCAAAAACTGGTCAATTGATAAAATATTGGTGATACTATGATTGATAAACATTTTGTCAGTTAAACACTTTTTGATATCTTTCACAGGAACCGAGATAAATGGGCTCAAAGTGGACGGTTTGGGTGGCCTTCTATTAGAGTGTTTACGGTACTTTTACTTTGAGCTCAATTATCTTGGTTGCTAGAAACCATACTAAAAAAGTTAACTGATAAAATGTTGGGGGTATTGTGATAAAAATTTTTGCTGTTGACAAATTTTTGACATCTCTTATAGGATTCGATATAATTGAGCATTTCAAAACGCGGAAGTGTGCCCCGCAGGTGTTTTTCTTCTTCTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb986</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1462503</contig_pos>
        <strand></strand>
        <context>CAAACAATTC[T/G]AGATTTTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ACATACTGTTTAGTTGAAGGGAAAATTTTTGAAAAAAAAACAAACAATTC</left_flank>
        <right_flank>AGATTTTTTAATATCTTAAACACTCTAACAGAAGGCTGCTCAACCCACCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTATATATCTCGGTTCCTGTAAAAGATATCAAATAATAATCAACTGATAAAATTTTTATCATAATATCAGCAACATTCTATCAGTTGACCACTTTCTGATATGTTTTACAGTAACCGAGATATTCGAGTTCAAAGTGGGCAGCTCATTTTTCCAACTCCCTAAAGTTCGAAAAATCAGAATGCAAAAAAAATTATTTTCAGCTCCAAAGAATTATTGTCTAGACACAAAAAATGTTTTGAAGGTCTTCTTCTCTTTTCTATTTTTGGAAATCGGAAAGAAACAACGAACAATATCTCAAGGGATTTGGGTATCAAGGATTATAGGATTTAGAAAAGCGGATTATCTTTCTTGGGGAGGGAGAGAAATCTAAAATTAATTTTCTAAAAAAGGGTTTTTCTCCAAAACAGTTCTTAACTTTGGTTAGAATTGAGCTAAAAATATGGTTTACATACTGTTTAGTTGAAGGGAAAATTTTTGAAAAAAAAACAAACAATTCTAGATTTTTTAATATCTTAAACACTCTAACAGAAGGCTGCTCAACCCACCAACTTTGAGCCCGTATATCTCAGTTCCTGTGAGAGATATCAAAAACTGGTCAATTGATAAAATATTGGTGATACTATGATTGATAAACATTTTGTCAGTTAAACACTTTTTGATATCTTTCACAGGAACCGAGATAAATGGGCTCAAAGTGGACGGTTTGGGTGGCCTTCTATTAGAGTGTTTACGGTACTTTTACTTTGAGCTCAATTATCTTGGTTGCTAGAAACCATACTAAAAAAGTTAACTGATAAAATGTTGGGGGTATTGTGATAAAAATTTTTGCTGTTGACAAATTTTTGACATCTCTTATAGGATTCGATATAATTGAGCATTTCAAAACGCGGAAGTGTGCCCCGCAGGTGTTTTTCTTCTTCTTGAGATTCATAAAGTAAGAAGAAAAGAAGAAGCTGAAGTGTGATCATTGATCCCCGAAAATGTGTTGTTTTCGCTG</canonical>
            <polymorphic>ACCTATATATCTCGGTTCCTGTAAAAGATATCAAATAATAATCAACTGATAAAATTTTTATCATAATATCAGCAACATTCTATCAGTTGACCACTTTCTGATATGTTTTACAGTAACCGAGATATTCGAGTTCAAAGTGGGCAGCTCATTTTTCCAACTCCCTAAAGTTCGAAAAATCAGAATGCAAAAAAAATTATTTTCAGCTCCAAAGAATTATTGTCTAGACACAAAAAATGTTTTGAAGGTCTTCTTCTCTTTTCTATTTTTGGAAATCGGAAAGAAACAACGAACAATATCTCAAGGGATTTGGGTATCAAGGATTATAGGATTTAGAAAAGCGGATTATCTTTCTTGGGGAGGGAGAGAAATCTAAAATTAATTTTCTAAAAAAGGGTTTTTCTCCAAAACAGTTCTTAACTTTGGTTAGAATTGAGCTAAAAATATGGTTTACATACTGTTTAGTTGAAGGGAAAATTTTTGAAAAAAAAACAAACAATTCKAGATTTTTTAATATCTTAAACACTCTAACAGAAGGCTGCTCAACCCACCAACTTTGAGCCCGTATATCTCAGTTCCTGTGAGAGATATCAAAAACTGGTCAATTGATAAAATATTGGTGATACTATGATTGATAAACATTTTGTCAGTTAAACACTTTTTGATATCTTTCACAGGAACCGAGATAAATGGGCTCAAAGTGGACGGTTTGGGTGGCCTTCTATTAGAGTGTTTACGGTACTTTTACTTTGAGCTCAATTATCTTGGTTGCTAGAAACCATACTAAAAAAGTTAACTGATAAAATGTTGGGGGTATTGTGATAAAAATTTTTGCTGTTGACAAATTTTTGACATCTCTTATAGGATTCGATATAATTGAGCATTTCAAAACGCGGAAGTGTGCCCCGCAGGTGTTTTTCTTCTTCTTGAGATTCATAAAGTAAGAAGAAAAGAAGAAGCTGAAGTGTGATCATTGATCCCCGAAAATGTGTTGTTTTCGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>278 270 231 221</canonical_bands>
                <polymorphic_bands>548 231 221</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 278 220</canonical_bands>
                <polymorphic_bands>780 220</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGTTTACATACTGTTTAGTTGAAG</pcr_primer_p1>
		<pcr_primer_p2>TCAAGAAGAAGAAAAACACCTG</pcr_primer_p2>
		<pcr_amplicon_size>484</pcr_amplicon_size>
		<canonical_amplicon>TGGTTTACATACTGTTTAGTTGAAGGGAAAATTTTTGAAAAAAAAACAAACAATTCTAGATTTTTTAATATCTTAAACACTCTAACAGAAGGCTGCTCAACCCACCAACTTTGAGCCCGTATATCTCAGTTCCTGTGAGAGATATCAAAAACTGGTCAATTGATAAAATATTGGTGATACTATGATTGATAAACATTTTGTCAGTTAAACACTTTTTGATATCTTTCACAGGAACCGAGATAAATGGGCTCAAAGTGGACGGTTTGGGTGGCCTTCTATTAGAGTGTTTACGGTACTTTTACTTTGAGCTCAATTATCTTGGTTGCTAGAAACCATACTAAAAAAGTTAACTGATAAAATGTTGGGGGTATTGTGATAAAAATTTTTGCTGTTGACAAATTTTTGACATCTCTTATAGGATTCGATATAATTGAGCATTTCAAAACGCGGAAGTGTGCCCCGCAGGTGTTTTTCTTCTTCTTGA</canonical_amplicon>
		<polymorphic_amplicon>TGGTTTACATACTGTTTAGTTGAAGGGAAAATTTTTGAAAAAAAAACAAACAATTCKAGATTTTTTAATATCTTAAACACTCTAACAGAAGGCTGCTCAACCCACCAACTTTGAGCCCGTATATCTCAGTTCCTGTGAGAGATATCAAAAACTGGTCAATTGATAAAATATTGGTGATACTATGATTGATAAACATTTTGTCAGTTAAACACTTTTTGATATCTTTCACAGGAACCGAGATAAATGGGCTCAAAGTGGACGGTTTGGGTGGCCTTCTATTAGAGTGTTTACGGTACTTTTACTTTGAGCTCAATTATCTTGGTTGCTAGAAACCATACTAAAAAAGTTAACTGATAAAATGTTGGGGGTATTGTGATAAAAATTTTTGCTGTTGACAAATTTTTGACATCTCTTATAGGATTCGATATAATTGAGCATTTCAAAACGCGGAAGTGTGCCCCGCAGGTGTTTTTCTTCTTCTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb987</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1462242</contig_pos>
        <strand>+</strand>
        <context>AAAAAATGTT[C/T]TGAAGGTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATTATTTTCAGCTCCAAAGAATTATTGTCTAGACACAAAAAATGTT</left_flank>
        <right_flank>TGAAGGTCTTCTTCTCTTTTCTATTTTTGGAAATCGGAAAGAAACAACGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAATTTTATTCTGCAGCAAAAAAAGAAAGATGATTAGAAATGGGCGGAGCCAGCTTGACCTATATAGAGAAGTAATTAAGGCATTAATTAAGAAAAATGCCTGATGGGAAATTGGTTATTGGGATCATTATAACTATAATGAAGAAATTCTATTTATAAAAAAACAGAAAAAAGCAAAAGATCGGAAAGTTTTGAAAGTTTTCCCAGCTATACTCTTTACGTAAACTCTAACAGAAGACCACTCTATACTTATACTTTGAACCTATATATCTCGGTTCCTGTAAAAGATATCAAATAATAATCAACTGATAAAATTTTTATCATAATATCAGCAACATTCTATCAGTTGACCACTTTCTGATATGTTTTACAGTAACCGAGATATTCGAGTTCAAAGTGGGCAGCTCATTTTTCCAACTCCCTAAAGTTCGAAAAATCAGAATGCAAAAAAAATTATTTTCAGCTCCAAAGAATTATTGTCTAGACACAAAAAATGTTTTGAAGGTCTTCTTCTCTTTTCTATTTTTGGAAATCGGAAAGAAACAACGAACAATATCTCAAGGGATTTGGGTATCAAGGATTATAGGATTTAGAAAAGCGGATTATCTTTCTTGGGGAGGGAGAGAAATCTAAAATTAATTTTCTAAAAAAGGGTTTTTCTCCAAAACAGTTCTTAACTTTGGTTAGAATTGAGCTAAAAATATGGTTTACATACTGTTTAGTTGAAGGGAAAATTTTTGAAAAAAAAACAAACAATTCTAGATTTTTTAATATCTTAAACACTCTAACAGAAGGCTGCTCAACCCACCAACTTTGAGCCCGTATATCTCAGTTCCTGTGAGAGATATCAAAAACTGGTCAATTGATAAAATATTGGTGATACTATGATTGATAAACATTTTGTCAGTTAAACACTTTTTGATATCTTTCACAGGAACCGAGATAAATGGGCTCAAAGTGGACGGTTTGGGTGGCCTTCTATTAGAGTGTTTACGGTAC</canonical>
            <polymorphic>ATAATTTTATTCTGCAGCAAAAAAAGAAAGATGATTAGAAATGGGCGGAGCCAGCTTGACCTATATAGAGAAGTAATTAAGGCATTAATTAAGAAAAATGCCTGATGGGAAATTGGTTATTGGGATCATTATAACTATAATGAAGAAATTCTATTTATAAAAAAACAGAAAAAAGCAAAAGATCGGAAAGTTTTGAAAGTTTTCCCAGCTATACTCTTTACGTAAACTCTAACAGAAGACCACTCTATACTTATACTTTGAACCTATATATCTCGGTTCCTGTAAAAGATATCAAATAATAATCAACTGATAAAATTTTTATCATAATATCAGCAACATTCTATCAGTTGACCACTTTCTGATATGTTTTACAGTAACCGAGATATTCGAGTTCAAAGTGGGCAGCTCATTTTTCCAACTCCCTAAAGTTCGAAAAATCAGAATGCAAAAAAAATTATTTTCAGCTCCAAAGAATTATTGTCTAGACACAAAAAATGTTYTGAAGGTCTTCTTCTCTTTTCTATTTTTGGAAATCGGAAAGAAACAACGAACAATATCTCAAGGGATTTGGGTATCAAGGATTATAGGATTTAGAAAAGCGGATTATCTTTCTTGGGGAGGGAGAGAAATCTAAAATTAATTTTCTAAAAAAGGGTTTTTCTCCAAAACAGTTCTTAACTTTGGTTAGAATTGAGCTAAAAATATGGTTTACATACTGTTTAGTTGAAGGGAAAATTTTTGAAAAAAAAACAAACAATTCTAGATTTTTTAATATCTTAAACACTCTAACAGAAGGCTGCTCAACCCACCAACTTTGAGCCCGTATATCTCAGTTCCTGTGAGAGATATCAAAAACTGGTCAATTGATAAAATATTGGTGATACTATGATTGATAAACATTTTGTCAGTTAAACACTTTTTGATATCTTTCACAGGAACCGAGATAAATGGGCTCAAAGTGGACGGTTTGGGTGGCCTTCTATTAGAGTGTTTACGGTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAAAGTTCGAAAAATCAGAATG</pcr_primer_p1>
		<pcr_primer_p2>TTAAGAACTGTTTTGGAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CTAAAGTTCGAAAAATCAGAATGCAAAAAAAATTATTTTCAGCTCCAAAGAATTATTGTCTAGACACAAAAAATGTTTTGAAGGTCTTCTTCTCTTTTCTATTTTTGGAAATCGGAAAGAAACAACGAACAATATCTCAAGGGATTTGGGTATCAAGGATTATAGGATTTAGAAAAGCGGATTATCTTTCTTGGGGAGGGAGAGAAATCTAAAATTAATTTTCTAAAAAAGGGTTTTTCTCCAAAACAGTTCTTAA</canonical_amplicon>
		<polymorphic_amplicon>CTAAAGTTCGAAAAATCAGAATGCAAAAAAAATTATTTTCAGCTCCAAAGAATTATTGTCTAGACACAAAAAATGTTYTGAAGGTCTTCTTCTCTTTTCTATTTTTGGAAATCGGAAAGAAACAACGAACAATATCTCAAGGGATTTGGGTATCAAGGATTATAGGATTTAGAAAAGCGGATTATCTTTCTTGGGGAGGGAGAGAAATCTAAAATTAATTTTCTAAAAAAGGGTTTTTCTCCAAAACAGTTCTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb989</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1464900</contig_pos>
        <strand>+</strand>
        <context>TCATAAGTTC[C/T]TTCAAATCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTTTATCGTTAAAAATCTAGGCGGAAACGGAAATCGGCTCATAAGTTC</left_flank>
        <right_flank>TTCAAATCTGTCCGATTGCGTTGAAATTTAAATTTCCAAAATTAAGGTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCGACGCGACCGCATCGCACCCTAATAAGGGTCCCCTCGAATTCAAACGGGGGGAGGAGGGAGAGAAAGGAAAGTATCGAAACTCTCTCTCTCTTCTTTTTTTTCTCCACTGAATTTGATTTCCGATGTCGTCGACTCTTCAGAATCAGAAGACGTCGTCGTCGGGTCGAAAGAAGAGGAAGAAGACGTGGGTGTGAAGAAGAAGGGGTAGAAGAGGTGTCATTTCTTTTCTTCGGGAAAAAAAGACGAAGAAGAGGACTCTCGAAAAAATCTTCTCAAATTTAAATTGGGTTTTGTGAGCTCCTGTGTGTGCTTCTTCTTCTCCAAAAGTTTTAGATGGCTTCAAAAGTTTGATATGCAGGTTCAGGAGGTACAGTAACATTTTTCAAAGAATGGAGTAAAACCATTGAGGGATAGTAATGGATTTCCCAATTAGACATTTGAAAAACTTTTTATCGTTAAAAATCTAGGCGGAAACGGAAATCGGCTCATAAGTTCTTTCAAATCTGTCCGATTGCGTTGAAATTTAAATTTCCAAAATTAAGGTGTTTTAAGGGTTCAGAAAAATGTAAATCTCAAAGTTTTACTTTTTTCAAAGAACCGTAGCCAGCTCAAATGTAACAAAGGAGTGGAATTCAATTGTCACACCACAAAGCACCTCATAGTTGTCTTCGAAATTGCCCAATCAATGGGATTTCCAGATATTTCAAAATTTCAGAAATTTGCCATTCAAAACCCTTGTACGCCCTTCACCCCAAAGCAGTTCTAATCTTGTGACCAAACACATTTCTTCAAGATCTCATAATGAAAGGCTTCAGCTTCTCCTATTTTAAAGCCATTCTTTCTATCCCTTAAACGTTATTTGGATTTTTTCTCTTCTCCAATGCTTTCCAATCCTTCTTCTTCTTCATTTTGTTGTGCCTCAAAAATGCAAAATACAACAAGTCTCTTTTTTTTCTCCGTGGAGAGGAGGGGCGGGGGGTTGGCTAAAAATAGATT</canonical>
            <polymorphic>CGCGACGCGACCGCATCGCACCCTAATAAGGGTCCCCTCGAATTCAAACGGGGGGAGGAGGGAGAGAAAGGAAAGTATCGAAACTCTCTCTCTCTTCTTTTTTTTCTCCACTGAATTTGATTTCCGATGTCGTCGACTCTTCAGAATCAGAAGACGTCGTCGTCGGGTCGAAAGAAGAGGAAGAAGACGTGGGTGTGAAGAAGAAGGGGTAGAAGAGGTGTCATTTCTTTTCTTCGGGAAAAAAAGACGAAGAAGAGGACTCTCGAAAAAATCTTCTCAAATTTAAATTGGGTTTTGTGAGCTCCTGTGTGTGCTTCTTCTTCTCCAAAAGTTTTAGATGGCTTCAAAAGTTTGATATGCAGGTTCAGGAGGTACAGTAACATTTTTCAAAGAATGGAGTAAAACCATTGAGGGATAGTAATGGATTTCCCAATTAGACATTTGAAAAACTTTTTATCGTTAAAAATCTAGGCGGAAACGGAAATCGGCTCATAAGTTCYTTCAAATCTGTCCGATTGCGTTGAAATTTAAATTTCCAAAATTAAGGTGTTTTAAGGGTTCAGAAAAATGTAAATCTCAAAGTTTTACTTTTTTCAAAGAACCGTAGCCAGCTCAAATGTAACAAAGGAGTGGAATTCAATTGTCACACCACAAAGCACCTCATAGTTGTCTTCGAAATTGCCCAATCAATGGGATTTCCAGATATTTCAAAATTTCAGAAATTTGCCATTCAAAACCCTTGTACGCCCTTCACCCCAAAGCAGTTCTAATCTTGTGACCAAACACATTTCTTCAAGATCTCATAATGAAAGGCTTCAGCTTCTCCTATTTTAAAGCCATTCTTTCTATCCCTTAAACGTTATTTGGATTTTTTCTCTTCTCCAATGCTTTCCAATCCTTCTTCTTCTTCATTTTGTTGTGCCTCAAAAATGCAAAATACAACAAGTCTCTTTTTTTTCTCCGTGGAGAGGAGGGGCGGGGGGTTGGCTAAAAATAGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAATTAGACATTTGAAAAACTT</pcr_primer_p1>
		<pcr_primer_p2>AATTTCGAAGACAACTATGAGGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCAATTAGACATTTGAAAAACTTTTTATCGTTAAAAATCTAGGCGGAAACGGAAATCGGCTCATAAGTTCTTTCAAATCTGTCCGATTGCGTTGAAATTTAAATTTCCAAAATTAAGGTGTTTTAAGGGTTCAGAAAAATGTAAATCTCAAAGTTTTACTTTTTTCAAAGAACCGTAGCCAGCTCAAATGTAACAAAGGAGTGGAATTCAATTGTCACACCACAAAGCACCTCATAGTTGTCTTCGAAATT</canonical_amplicon>
		<polymorphic_amplicon>CCAATTAGACATTTGAAAAACTTTTTATCGTTAAAAATCTAGGCGGAAACGGAAATCGGCTCATAAGTTCYTTCAAATCTGTCCGATTGCGTTGAAATTTAAATTTCCAAAATTAAGGTGTTTTAAGGGTTCAGAAAAATGTAAATCTCAAAGTTTTACTTTTTTCAAAGAACCGTAGCCAGCTCAAATGTAACAAAGGAGTGGAATTCAATTGTCACACCACAAAGCACCTCATAGTTGTCTTCGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb990</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1464828</contig_pos>
        <strand>+</strand>
        <context>GTAATGGATT[A/T]CCCAATTAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAACATTTTTCAAAGAATGGAGTAAAACCATTGAGGGATAGTAATGGATT</left_flank>
        <right_flank>CCCAATTAGACATTTGAAAAACTTTTTATCGTTAAAAATCTAGGCGGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGTTCGGAGGATTCAAAAAAGTACAAACAAGCCTATCTTTCCAAGATTTCCAATTTTTCAGTGATCCCGCCGCGACGCGACCGCATCGCACCCTAATAAGGGTCCCCTCGAATTCAAACGGGGGGAGGAGGGAGAGAAAGGAAAGTATCGAAACTCTCTCTCTCTTCTTTTTTTTCTCCACTGAATTTGATTTCCGATGTCGTCGACTCTTCAGAATCAGAAGACGTCGTCGTCGGGTCGAAAGAAGAGGAAGAAGACGTGGGTGTGAAGAAGAAGGGGTAGAAGAGGTGTCATTTCTTTTCTTCGGGAAAAAAAGACGAAGAAGAGGACTCTCGAAAAAATCTTCTCAAATTTAAATTGGGTTTTGTGAGCTCCTGTGTGTGCTTCTTCTTCTCCAAAAGTTTTAGATGGCTTCAAAAGTTTGATATGCAGGTTCAGGAGGTACAGTAACATTTTTCAAAGAATGGAGTAAAACCATTGAGGGATAGTAATGGATTTCCCAATTAGACATTTGAAAAACTTTTTATCGTTAAAAATCTAGGCGGAAACGGAAATCGGCTCATAAGTTCTTTCAAATCTGTCCGATTGCGTTGAAATTTAAATTTCCAAAATTAAGGTGTTTTAAGGGTTCAGAAAAATGTAAATCTCAAAGTTTTACTTTTTTCAAAGAACCGTAGCCAGCTCAAATGTAACAAAGGAGTGGAATTCAATTGTCACACCACAAAGCACCTCATAGTTGTCTTCGAAATTGCCCAATCAATGGGATTTCCAGATATTTCAAAATTTCAGAAATTTGCCATTCAAAACCCTTGTACGCCCTTCACCCCAAAGCAGTTCTAATCTTGTGACCAAACACATTTCTTCAAGATCTCATAATGAAAGGCTTCAGCTTCTCCTATTTTAAAGCCATTCTTTCTATCCCTTAAACGTTATTTGGATTTTTTCTCTTCTCCAATGCTTTCCAATCCTTCTTCTTCTTCATTTTGTTGTGCCTCAAA</canonical>
            <polymorphic>CAAGTTCGGAGGATTCAAAAAAGTACAAACAAGCCTATCTTTCCAAGATTTCCAATTTTTCAGTGATCCCGCCGCGACGCGACCGCATCGCACCCTAATAAGGGTCCCCTCGAATTCAAACGGGGGGAGGAGGGAGAGAAAGGAAAGTATCGAAACTCTCTCTCTCTTCTTTTTTTTCTCCACTGAATTTGATTTCCGATGTCGTCGACTCTTCAGAATCAGAAGACGTCGTCGTCGGGTCGAAAGAAGAGGAAGAAGACGTGGGTGTGAAGAAGAAGGGGTAGAAGAGGTGTCATTTCTTTTCTTCGGGAAAAAAAGACGAAGAAGAGGACTCTCGAAAAAATCTTCTCAAATTTAAATTGGGTTTTGTGAGCTCCTGTGTGTGCTTCTTCTTCTCCAAAAGTTTTAGATGGCTTCAAAAGTTTGATATGCAGGTTCAGGAGGTACAGTAACATTTTTCAAAGAATGGAGTAAAACCATTGAGGGATAGTAATGGATTWCCCAATTAGACATTTGAAAAACTTTTTATCGTTAAAAATCTAGGCGGAAACGGAAATCGGCTCATAAGTTCTTTCAAATCTGTCCGATTGCGTTGAAATTTAAATTTCCAAAATTAAGGTGTTTTAAGGGTTCAGAAAAATGTAAATCTCAAAGTTTTACTTTTTTCAAAGAACCGTAGCCAGCTCAAATGTAACAAAGGAGTGGAATTCAATTGTCACACCACAAAGCACCTCATAGTTGTCTTCGAAATTGCCCAATCAATGGGATTTCCAGATATTTCAAAATTTCAGAAATTTGCCATTCAAAACCCTTGTACGCCCTTCACCCCAAAGCAGTTCTAATCTTGTGACCAAACACATTTCTTCAAGATCTCATAATGAAAGGCTTCAGCTTCTCCTATTTTAAAGCCATTCTTTCTATCCCTTAAACGTTATTTGGATTTTTTCTCTTCTCCAATGCTTTCCAATCCTTCTTCTTCTTCATTTTGTTGTGCCTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGCTTCTTCTTCTCCAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAACCCTTAAAACACCTTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTGCTTCTTCTTCTCCAAAAGTTTTAGATGGCTTCAAAAGTTTGATATGCAGGTTCAGGAGGTACAGTAACATTTTTCAAAGAATGGAGTAAAACCATTGAGGGATAGTAATGGATTTCCCAATTAGACATTTGAAAAACTTTTTATCGTTAAAAATCTAGGCGGAAACGGAAATCGGCTCATAAGTTCTTTCAAATCTGTCCGATTGCGTTGAAATTTAAATTTCCAAAATTAAGGTGTTTTAAGGGTTC</canonical_amplicon>
		<polymorphic_amplicon>GTGCTTCTTCTTCTCCAAAAGTTTTAGATGGCTTCAAAAGTTTGATATGCAGGTTCAGGAGGTACAGTAACATTTTTCAAAGAATGGAGTAAAACCATTGAGGGATAGTAATGGATTWCCCAATTAGACATTTGAAAAACTTTTTATCGTTAAAAATCTAGGCGGAAACGGAAATCGGCTCATAAGTTCTTTCAAATCTGTCCGATTGCGTTGAAATTTAAATTTCCAAAATTAAGGTGTTTTAAGGGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb991</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1464814</contig_pos>
        <strand>+</strand>
        <context>ACCWTTGAGG[A/G]ATAGTAATGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAGGAGGTACAGTAACATTTTTCAAAGAATGGAGTAAAACCATTGAGG</left_flank>
        <right_flank>ATAGTAATGGATTTCCCAATTAGACATTTGAAAAACTTTTTATCGTTAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATCAGATTTCTCAAGTTCGGAGGATTCAAAAAAGTACAAACAAGCCTATCTTTCCAAGATTTCCAATTTTTCAGTGATCCCGCCGCGACGCGACCGCATCGCACCCTAATAAGGGTCCCCTCGAATTCAAACGGGGGGAGGAGGGAGAGAAAGGAAAGTATCGAAACTCTCTCTCTCTTCTTTTTTTTCTCCACTGAATTTGATTTCCGATGTCGTCGACTCTTCAGAATCAGAAGACGTCGTCGTCGGGTCGAAAGAAGAGGAAGAAGACGTGGGTGTGAAGAAGAAGGGGTAGAAGAGGTGTCATTTCTTTTCTTCGGGAAAAAAAGACGAAGAAGAGGACTCTCGAAAAAATCTTCTCAAATTTAAATTGGGTTTTGTGAGCTCCTGTGTGTGCTTCTTCTTCTCCAAAAGTTTTAGATGGCTTCAAAAGTTTGATATGCAGGTTCAGGAGGTACAGTAACATTTTTCAAAGAATGGAGTAAAACCATTGAGGGATAGTAATGGATTTCCCAATTAGACATTTGAAAAACTTTTTATCGTTAAAAATCTAGGCGGAAACGGAAATCGGCTCATAAGTTCTTTCAAATCTGTCCGATTGCGTTGAAATTTAAATTTCCAAAATTAAGGTGTTTTAAGGGTTCAGAAAAATGTAAATCTCAAAGTTTTACTTTTTTCAAAGAACCGTAGCCAGCTCAAATGTAACAAAGGAGTGGAATTCAATTGTCACACCACAAAGCACCTCATAGTTGTCTTCGAAATTGCCCAATCAATGGGATTTCCAGATATTTCAAAATTTCAGAAATTTGCCATTCAAAACCCTTGTACGCCCTTCACCCCAAAGCAGTTCTAATCTTGTGACCAAACACATTTCTTCAAGATCTCATAATGAAAGGCTTCAGCTTCTCCTATTTTAAAGCCATTCTTTCTATCCCTTAAACGTTATTTGGATTTTTTCTCTTCTCCAATGCTTTCCAATCCTTCTTCTTCTTCATTT</canonical>
            <polymorphic>ATTATCAGATTTCTCAAGTTCGGAGGATTCAAAAAAGTACAAACAAGCCTATCTTTCCAAGATTTCCAATTTTTCAGTGATCCCGCCGCGACGCGACCGCATCGCACCCTAATAAGGGTCCCCTCGAATTCAAACGGGGGGAGGAGGGAGAGAAAGGAAAGTATCGAAACTCTCTCTCTCTTCTTTTTTTTCTCCACTGAATTTGATTTCCGATGTCGTCGACTCTTCAGAATCAGAAGACGTCGTCGTCGGGTCGAAAGAAGAGGAAGAAGACGTGGGTGTGAAGAAGAAGGGGTAGAAGAGGTGTCATTTCTTTTCTTCGGGAAAAAAAGACGAAGAAGAGGACTCTCGAAAAAATCTTCTCAAATTTAAATTGGGTTTTGTGAGCTCCTGTGTGTGCTTCTTCTTCTCCAAAAGTTTTAGATGGCTTCAAAAGTTTGATATGCAGGTTCAGGAGGTACAGTAACATTTTTCAAAGAATGGAGTAAAACCATTGAGGRATAGTAATGGATTTCCCAATTAGACATTTGAAAAACTTTTTATCGTTAAAAATCTAGGCGGAAACGGAAATCGGCTCATAAGTTCTTTCAAATCTGTCCGATTGCGTTGAAATTTAAATTTCCAAAATTAAGGTGTTTTAAGGGTTCAGAAAAATGTAAATCTCAAAGTTTTACTTTTTTCAAAGAACCGTAGCCAGCTCAAATGTAACAAAGGAGTGGAATTCAATTGTCACACCACAAAGCACCTCATAGTTGTCTTCGAAATTGCCCAATCAATGGGATTTCCAGATATTTCAAAATTTCAGAAATTTGCCATTCAAAACCCTTGTACGCCCTTCACCCCAAAGCAGTTCTAATCTTGTGACCAAACACATTTCTTCAAGATCTCATAATGAAAGGCTTCAGCTTCTCCTATTTTAAAGCCATTCTTTCTATCCCTTAAACGTTATTTGGATTTTTTCTCTTCTCCAATGCTTTCCAATCCTTCTTCTTCTTCATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGCTTCTTCTTCTCCAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAACCCTTAAAACACCTTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTGCTTCTTCTTCTCCAAAAGTTTTAGATGGCTTCAAAAGTTTGATATGCAGGTTCAGGAGGTACAGTAACATTTTTCAAAGAATGGAGTAAAACCATTGAGGGATAGTAATGGATTTCCCAATTAGACATTTGAAAAACTTTTTATCGTTAAAAATCTAGGCGGAAACGGAAATCGGCTCATAAGTTCTTTCAAATCTGTCCGATTGCGTTGAAATTTAAATTTCCAAAATTAAGGTGTTTTAAGGGTTC</canonical_amplicon>
		<polymorphic_amplicon>GTGCTTCTTCTTCTCCAAAAGTTTTAGATGGCTTCAAAAGTTTGATATGCAGGTTCAGGAGGTACAGTAACATTTTTCAAAGAATGGAGTAAAACCATTGAGGRATAGTAATGGATTTCCCAATTAGACATTTGAAAAACTTTTTATCGTTAAAAATCTAGGCGGAAACGGAAATCGGCTCATAAGTTCTTTCAAATCTGTCCGATTGCGTTGAAATTTAAATTTCCAAAATTAAGGTGTTTTAAGGGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb992</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1464807</contig_pos>
        <strand>+</strand>
        <context>GAGTAAAACC[A/T]TTGAGGRATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGCAGGTTCAGGAGGTACAGTAACATTTTTCAAAGAATGGAGTAAAACC</left_flank>
        <right_flank>TTGAGGGATAGTAATGGATTTCCCAATTAGACATTTGAAAAACTTTTTAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTGTAATTATCAGATTTCTCAAGTTCGGAGGATTCAAAAAAGTACAAACAAGCCTATCTTTCCAAGATTTCCAATTTTTCAGTGATCCCGCCGCGACGCGACCGCATCGCACCCTAATAAGGGTCCCCTCGAATTCAAACGGGGGGAGGAGGGAGAGAAAGGAAAGTATCGAAACTCTCTCTCTCTTCTTTTTTTTCTCCACTGAATTTGATTTCCGATGTCGTCGACTCTTCAGAATCAGAAGACGTCGTCGTCGGGTCGAAAGAAGAGGAAGAAGACGTGGGTGTGAAGAAGAAGGGGTAGAAGAGGTGTCATTTCTTTTCTTCGGGAAAAAAAGACGAAGAAGAGGACTCTCGAAAAAATCTTCTCAAATTTAAATTGGGTTTTGTGAGCTCCTGTGTGTGCTTCTTCTTCTCCAAAAGTTTTAGATGGCTTCAAAAGTTTGATATGCAGGTTCAGGAGGTACAGTAACATTTTTCAAAGAATGGAGTAAAACCATTGAGGGATAGTAATGGATTTCCCAATTAGACATTTGAAAAACTTTTTATCGTTAAAAATCTAGGCGGAAACGGAAATCGGCTCATAAGTTCTTTCAAATCTGTCCGATTGCGTTGAAATTTAAATTTCCAAAATTAAGGTGTTTTAAGGGTTCAGAAAAATGTAAATCTCAAAGTTTTACTTTTTTCAAAGAACCGTAGCCAGCTCAAATGTAACAAAGGAGTGGAATTCAATTGTCACACCACAAAGCACCTCATAGTTGTCTTCGAAATTGCCCAATCAATGGGATTTCCAGATATTTCAAAATTTCAGAAATTTGCCATTCAAAACCCTTGTACGCCCTTCACCCCAAAGCAGTTCTAATCTTGTGACCAAACACATTTCTTCAAGATCTCATAATGAAAGGCTTCAGCTTCTCCTATTTTAAAGCCATTCTTTCTATCCCTTAAACGTTATTTGGATTTTTTCTCTTCTCCAATGCTTTCCAATCCTTCTTCTTC</canonical>
            <polymorphic>AACTGTAATTATCAGATTTCTCAAGTTCGGAGGATTCAAAAAAGTACAAACAAGCCTATCTTTCCAAGATTTCCAATTTTTCAGTGATCCCGCCGCGACGCGACCGCATCGCACCCTAATAAGGGTCCCCTCGAATTCAAACGGGGGGAGGAGGGAGAGAAAGGAAAGTATCGAAACTCTCTCTCTCTTCTTTTTTTTCTCCACTGAATTTGATTTCCGATGTCGTCGACTCTTCAGAATCAGAAGACGTCGTCGTCGGGTCGAAAGAAGAGGAAGAAGACGTGGGTGTGAAGAAGAAGGGGTAGAAGAGGTGTCATTTCTTTTCTTCGGGAAAAAAAGACGAAGAAGAGGACTCTCGAAAAAATCTTCTCAAATTTAAATTGGGTTTTGTGAGCTCCTGTGTGTGCTTCTTCTTCTCCAAAAGTTTTAGATGGCTTCAAAAGTTTGATATGCAGGTTCAGGAGGTACAGTAACATTTTTCAAAGAATGGAGTAAAACCWTTGAGGGATAGTAATGGATTTCCCAATTAGACATTTGAAAAACTTTTTATCGTTAAAAATCTAGGCGGAAACGGAAATCGGCTCATAAGTTCTTTCAAATCTGTCCGATTGCGTTGAAATTTAAATTTCCAAAATTAAGGTGTTTTAAGGGTTCAGAAAAATGTAAATCTCAAAGTTTTACTTTTTTCAAAGAACCGTAGCCAGCTCAAATGTAACAAAGGAGTGGAATTCAATTGTCACACCACAAAGCACCTCATAGTTGTCTTCGAAATTGCCCAATCAATGGGATTTCCAGATATTTCAAAATTTCAGAAATTTGCCATTCAAAACCCTTGTACGCCCTTCACCCCAAAGCAGTTCTAATCTTGTGACCAAACACATTTCTTCAAGATCTCATAATGAAAGGCTTCAGCTTCTCCTATTTTAAAGCCATTCTTTCTATCCCTTAAACGTTATTTGGATTTTTTCTCTTCTCCAATGCTTTCCAATCCTTCTTCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGCTTCTTCTTCTCCAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAACCCTTAAAACACCTTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTGCTTCTTCTTCTCCAAAAGTTTTAGATGGCTTCAAAAGTTTGATATGCAGGTTCAGGAGGTACAGTAACATTTTTCAAAGAATGGAGTAAAACCATTGAGGGATAGTAATGGATTTCCCAATTAGACATTTGAAAAACTTTTTATCGTTAAAAATCTAGGCGGAAACGGAAATCGGCTCATAAGTTCTTTCAAATCTGTCCGATTGCGTTGAAATTTAAATTTCCAAAATTAAGGTGTTTTAAGGGTTC</canonical_amplicon>
		<polymorphic_amplicon>GTGCTTCTTCTTCTCCAAAAGTTTTAGATGGCTTCAAAAGTTTGATATGCAGGTTCAGGAGGTACAGTAACATTTTTCAAAGAATGGAGTAAAACCWTTGAGGGATAGTAATGGATTTCCCAATTAGACATTTGAAAAACTTTTTATCGTTAAAAATCTAGGCGGAAACGGAAATCGGCTCATAAGTTCTTTCAAATCTGTCCGATTGCGTTGAAATTTAAATTTCCAAAATTAAGGTGTTTTAAGGGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb993</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1464790</contig_pos>
        <strand>+</strand>
        <context>ACATTTTTCA[A/T]AGAATGGAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGCTTCAAAAGTTTGATATGCAGGTTCAGGAGGTACAGTAACATTTTTCA</left_flank>
        <right_flank>AGAATGGAGTAAAACCATTGAGGGATAGTAATGGATTTCCCAATTAGACA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTCCAATTTTTCTCAAACTGTAATTATCAGATTTCTCAAGTTCGGAGGATTCAAAAAAGTACAAACAAGCCTATCTTTCCAAGATTTCCAATTTTTCAGTGATCCCGCCGCGACGCGACCGCATCGCACCCTAATAAGGGTCCCCTCGAATTCAAACGGGGGGAGGAGGGAGAGAAAGGAAAGTATCGAAACTCTCTCTCTCTTCTTTTTTTTCTCCACTGAATTTGATTTCCGATGTCGTCGACTCTTCAGAATCAGAAGACGTCGTCGTCGGGTCGAAAGAAGAGGAAGAAGACGTGGGTGTGAAGAAGAAGGGGTAGAAGAGGTGTCATTTCTTTTCTTCGGGAAAAAAAGACGAAGAAGAGGACTCTCGAAAAAATCTTCTCAAATTTAAATTGGGTTTTGTGAGCTCCTGTGTGTGCTTCTTCTTCTCCAAAAGTTTTAGATGGCTTCAAAAGTTTGATATGCAGGTTCAGGAGGTACAGTAACATTTTTCAAAGAATGGAGTAAAACCATTGAGGGATAGTAATGGATTTCCCAATTAGACATTTGAAAAACTTTTTATCGTTAAAAATCTAGGCGGAAACGGAAATCGGCTCATAAGTTCTTTCAAATCTGTCCGATTGCGTTGAAATTTAAATTTCCAAAATTAAGGTGTTTTAAGGGTTCAGAAAAATGTAAATCTCAAAGTTTTACTTTTTTCAAAGAACCGTAGCCAGCTCAAATGTAACAAAGGAGTGGAATTCAATTGTCACACCACAAAGCACCTCATAGTTGTCTTCGAAATTGCCCAATCAATGGGATTTCCAGATATTTCAAAATTTCAGAAATTTGCCATTCAAAACCCTTGTACGCCCTTCACCCCAAAGCAGTTCTAATCTTGTGACCAAACACATTTCTTCAAGATCTCATAATGAAAGGCTTCAGCTTCTCCTATTTTAAAGCCATTCTTTCTATCCCTTAAACGTTATTTGGATTTTTTCTCTTCTCCAATGCTT</canonical>
            <polymorphic>TGCTCCAATTTTTCTCAAACTGTAATTATCAGATTTCTCAAGTTCGGAGGATTCAAAAAAGTACAAACAAGCCTATCTTTCCAAGATTTCCAATTTTTCAGTGATCCCGCCGCGACGCGACCGCATCGCACCCTAATAAGGGTCCCCTCGAATTCAAACGGGGGGAGGAGGGAGAGAAAGGAAAGTATCGAAACTCTCTCTCTCTTCTTTTTTTTCTCCACTGAATTTGATTTCCGATGTCGTCGACTCTTCAGAATCAGAAGACGTCGTCGTCGGGTCGAAAGAAGAGGAAGAAGACGTGGGTGTGAAGAAGAAGGGGTAGAAGAGGTGTCATTTCTTTTCTTCGGGAAAAAAAGACGAAGAAGAGGACTCTCGAAAAAATCTTCTCAAATTTAAATTGGGTTTTGTGAGCTCCTGTGTGTGCTTCTTCTTCTCCAAAAGTTTTAGATGGCTTCAAAAGTTTGATATGCAGGTTCAGGAGGTACAGTAACATTTTTCAWAGAATGGAGTAAAACCATTGAGGGATAGTAATGGATTTCCCAATTAGACATTTGAAAAACTTTTTATCGTTAAAAATCTAGGCGGAAACGGAAATCGGCTCATAAGTTCTTTCAAATCTGTCCGATTGCGTTGAAATTTAAATTTCCAAAATTAAGGTGTTTTAAGGGTTCAGAAAAATGTAAATCTCAAAGTTTTACTTTTTTCAAAGAACCGTAGCCAGCTCAAATGTAACAAAGGAGTGGAATTCAATTGTCACACCACAAAGCACCTCATAGTTGTCTTCGAAATTGCCCAATCAATGGGATTTCCAGATATTTCAAAATTTCAGAAATTTGCCATTCAAAACCCTTGTACGCCCTTCACCCCAAAGCAGTTCTAATCTTGTGACCAAACACATTTCTTCAAGATCTCATAATGAAAGGCTTCAGCTTCTCCTATTTTAAAGCCATTCTTTCTATCCCTTAAACGTTATTTGGATTTTTTCTCTTCTCCAATGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGCTTCTTCTTCTCCAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAACCCTTAAAACACCTTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTGCTTCTTCTTCTCCAAAAGTTTTAGATGGCTTCAAAAGTTTGATATGCAGGTTCAGGAGGTACAGTAACATTTTTCAAAGAATGGAGTAAAACCATTGAGGGATAGTAATGGATTTCCCAATTAGACATTTGAAAAACTTTTTATCGTTAAAAATCTAGGCGGAAACGGAAATCGGCTCATAAGTTCTTTCAAATCTGTCCGATTGCGTTGAAATTTAAATTTCCAAAATTAAGGTGTTTTAAGGGTTC</canonical_amplicon>
		<polymorphic_amplicon>GTGCTTCTTCTTCTCCAAAAGTTTTAGATGGCTTCAAAAGTTTGATATGCAGGTTCAGGAGGTACAGTAACATTTTTCAWAGAATGGAGTAAAACCATTGAGGGATAGTAATGGATTTCCCAATTAGACATTTGAAAAACTTTTTATCGTTAAAAATCTAGGCGGAAACGGAAATCGGCTCATAAGTTCTTTCAAATCTGTCCGATTGCGTTGAAATTTAAATTTCCAAAATTAAGGTGTTTTAAGGGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb994</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1464731</contig_pos>
        <strand>+</strand>
        <context>TTCTCCAAAA[A/G]TTTTAGATGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTAAATTGGGTTTTGTGAGCTCCTGTGTGTGCTTCTTCTTCTCCAAAA</left_flank>
        <right_flank>TTTTAGATGGCTTCAAAAGTTTGATATGCAGGTTCAGGAGGTACAGTAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTTTAAAGTTGATTGGACCTCCTCAGAAACAGTTTAGACCATAAATCCCTAGGTTTTGCTCCAATTTTTCTCAAACTGTAATTATCAGATTTCTCAAGTTCGGAGGATTCAAAAAAGTACAAACAAGCCTATCTTTCCAAGATTTCCAATTTTTCAGTGATCCCGCCGCGACGCGACCGCATCGCACCCTAATAAGGGTCCCCTCGAATTCAAACGGGGGGAGGAGGGAGAGAAAGGAAAGTATCGAAACTCTCTCTCTCTTCTTTTTTTTCTCCACTGAATTTGATTTCCGATGTCGTCGACTCTTCAGAATCAGAAGACGTCGTCGTCGGGTCGAAAGAAGAGGAAGAAGACGTGGGTGTGAAGAAGAAGGGGTAGAAGAGGTGTCATTTCTTTTCTTCGGGAAAAAAAGACGAAGAAGAGGACTCTCGAAAAAATCTTCTCAAATTTAAATTGGGTTTTGTGAGCTCCTGTGTGTGCTTCTTCTTCTCCAAAAGTTTTAGATGGCTTCAAAAGTTTGATATGCAGGTTCAGGAGGTACAGTAACATTTTTCAAAGAATGGAGTAAAACCATTGAGGGATAGTAATGGATTTCCCAATTAGACATTTGAAAAACTTTTTATCGTTAAAAATCTAGGCGGAAACGGAAATCGGCTCATAAGTTCTTTCAAATCTGTCCGATTGCGTTGAAATTTAAATTTCCAAAATTAAGGTGTTTTAAGGGTTCAGAAAAATGTAAATCTCAAAGTTTTACTTTTTTCAAAGAACCGTAGCCAGCTCAAATGTAACAAAGGAGTGGAATTCAATTGTCACACCACAAAGCACCTCATAGTTGTCTTCGAAATTGCCCAATCAATGGGATTTCCAGATATTTCAAAATTTCAGAAATTTGCCATTCAAAACCCTTGTACGCCCTTCACCCCAAAGCAGTTCTAATCTTGTGACCAAACACATTTCTTCAAGATCTCATAATGAAAGGCTTCAGCTTCTCCTATTT</canonical>
            <polymorphic>ATTCTTTAAAGTTGATTGGACCTCCTCAGAAACAGTTTAGACCATAAATCCCTAGGTTTTGCTCCAATTTTTCTCAAACTGTAATTATCAGATTTCTCAAGTTCGGAGGATTCAAAAAAGTACAAACAAGCCTATCTTTCCAAGATTTCCAATTTTTCAGTGATCCCGCCGCGACGCGACCGCATCGCACCCTAATAAGGGTCCCCTCGAATTCAAACGGGGGGAGGAGGGAGAGAAAGGAAAGTATCGAAACTCTCTCTCTCTTCTTTTTTTTCTCCACTGAATTTGATTTCCGATGTCGTCGACTCTTCAGAATCAGAAGACGTCGTCGTCGGGTCGAAAGAAGAGGAAGAAGACGTGGGTGTGAAGAAGAAGGGGTAGAAGAGGTGTCATTTCTTTTCTTCGGGAAAAAAAGACGAAGAAGAGGACTCTCGAAAAAATCTTCTCAAATTTAAATTGGGTTTTGTGAGCTCCTGTGTGTGCTTCTTCTTCTCCAAAARTTTTAGATGGCTTCAAAAGTTTGATATGCAGGTTCAGGAGGTACAGTAACATTTTTCAAAGAATGGAGTAAAACCATTGAGGGATAGTAATGGATTTCCCAATTAGACATTTGAAAAACTTTTTATCGTTAAAAATCTAGGCGGAAACGGAAATCGGCTCATAAGTTCTTTCAAATCTGTCCGATTGCGTTGAAATTTAAATTTCCAAAATTAAGGTGTTTTAAGGGTTCAGAAAAATGTAAATCTCAAAGTTTTACTTTTTTCAAAGAACCGTAGCCAGCTCAAATGTAACAAAGGAGTGGAATTCAATTGTCACACCACAAAGCACCTCATAGTTGTCTTCGAAATTGCCCAATCAATGGGATTTCCAGATATTTCAAAATTTCAGAAATTTGCCATTCAAAACCCTTGTACGCCCTTCACCCCAAAGCAGTTCTAATCTTGTGACCAAACACATTTCTTCAAGATCTCATAATGAAAGGCTTCAGCTTCTCCTATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGAAAGAAGAGGAAGAAGAC</pcr_primer_p1>
		<pcr_primer_p2>TGAAAAATGTTACTGTACCTCCT</pcr_primer_p2>
		<pcr_amplicon_size>222</pcr_amplicon_size>
		<canonical_amplicon>TCGAAAGAAGAGGAAGAAGACGTGGGTGTGAAGAAGAAGGGGTAGAAGAGGTGTCATTTCTTTTCTTCGGGAAAAAAAGACGAAGAAGAGGACTCTCGAAAAAATCTTCTCAAATTTAAATTGGGTTTTGTGAGCTCCTGTGTGTGCTTCTTCTTCTCCAAAAGTTTTAGATGGCTTCAAAAGTTTGATATGCAGGTTCAGGAGGTACAGTAACATTTTTCA</canonical_amplicon>
		<polymorphic_amplicon>TCGAAAGAAGAGGAAGAAGACGTGGGTGTGAAGAAGAAGGGGTAGAAGAGGTGTCATTTCTTTTCTTCGGGAAAAAAAGACGAAGAAGAGGACTCTCGAAAAAATCTTCTCAAATTTAAATTGGGTTTTGTGAGCTCCTGTGTGTGCTTCTTCTTCTCCAAAARTTTTAGATGGCTTCAAAAGTTTGATATGCAGGTTCAGGAGGTACAGTAACATTTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1050</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>37892</contig_pos>
        <strand>+</strand>
        <context>CAAGCATTTT[C/T]ACTTTCCTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTTCATCCAGTTCCCCTCCCTCCTTTCATCTTCCATCACAAGCATTTT</left_flank>
        <right_flank>ACTTTCCTCCCCCTATCCATTCATTTTCTTTCGAGAAAGTCAAAAATATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTTTGAAAAACTTGTATTTCTTTGAAGATCAGAATCCTGGATTTTTAACAGATGATCTTTTTTTTAATTCACAATGAGCTACAAATTATGAAGGGAATTATGAACCAAACAGTTGCGCCTCTCAATGAAAGTGTGAAATTCTGGAGAATTTTTTGCTGAAAACGAAATTTTTAATTTCAAACATCACATTTTGAGAGTCGCCCTTCTGTTGAAGGGGTCCTTCGAATATAGGTTTATGGCATGTTTGTGTCCGGTACTGTATGTATACAAACCAATCAAACCTATTTTTCAAATTTTTCTGAAATTTCTAAGCATGTCTGATGTAACAATACACAAATCCACAATTCTTCATTCGAAACAAAAACGAGTTTCCGTTCTGGGATCACCACCTATGTCAGAAGGTGATATTCTCGTCGTTAGCCATCCTTATCACTGATAGATTTCTCGTTTTCATCCAGTTCCCCTCCCTCCTTTCATCTTCCATCACAAGCATTTTTACTTTCCTCCCCCTATCCATTCATTTTCTTTCGAGAAAGTCAAAAATATTCCTGAAAATGTTAATATTTTTACTAATTTTTCTGTTTCTCAATTTTTGTAAGTTTTTTACAGTTCAAAAGTTGGTCAATGCGAAGGAAGAACTTTCGGTTACAATCATTTTCTTTTAACTTTCTAGATCCAATATCCGCGGGCTCACCACCGAATTCCGATGTTCCCGGTGCTCTTTTATCCTCTCTTGCCACTAAAAACCACCCAAAACTTCCATTAGCTCCATCCATGGAAGCACTAGAATTGATGGGAGTTCAATTTGTGGATGCTTTAATTAAAAAAGGACAGATGGAAATGGCAAAAGGAGCATTCAAAACACAACTGGAGGTTCTGGAGAAAGTACATCCGGATCAATTTGAGAAATATAAGAAACTGAAAGTGGAGGATTTAGCGGCAGATGCAGTTATGCAACAGGCAGAAATGTCCAAGTTGCAACCGAAAACTGGTAAGG</canonical>
            <polymorphic>GATTTTTGAAAAACTTGTATTTCTTTGAAGATCAGAATCCTGGATTTTTAACAGATGATCTTTTTTTTAATTCACAATGAGCTACAAATTATGAAGGGAATTATGAACCAAACAGTTGCGCCTCTCAATGAAAGTGTGAAATTCTGGAGAATTTTTTGCTGAAAACGAAATTTTTAATTTCAAACATCACATTTTGAGAGTCGCCCTTCTGTTGAAGGGGTCCTTCGAATATAGGTTTATGGCATGTTTGTGTCCGGTACTGTATGTATACAAACCAATCAAACCTATTTTTCAAATTTTTCTGAAATTTCTAAGCATGTCTGATGTAACAATACACAAATCCACAATTCTTCATTCGAAACAAAAACGAGTTTCCGTTCTGGGATCACCACCTATGTCAGAAGGTGATATTCTCGTCGTTAGCCATCCTTATCACTGATAGATTTCTCGTTTTCATCCAGTTCCCCTCCCTCCTTTCATCTTCCATCACAAGCATTTTYACTTTCCTCCCCCTATCCATTCATTTTCTTTCGAGAAAGTCAAAAATATTCCTGAAAATGTTAATATTTTTACTAATTTTTCTGTTTCTCAATTTTTGTAAGTTTTTTACAGTTCAAAAGTTGGTCAATGCGAAGGAAGAACTTTCGGTTACAATCATTTTCTTTTAACTTTCTAGATCCAATATCCGCGGGCTCACCACCGAATTCCGATGTTCCCGGTGCTCTTTTATCCTCTCTTGCCACTAAAAACCACCCAAAACTTCCATTAGCTCCATCCATGGAAGCACTAGAATTGATGGGAGTTCAATTTGTGGATGCTTTAATTAAAAAAGGACAGATGGAAATGGCAAAAGGAGCATTCAAAACACAACTGGAGGTTCTGGAGAAAGTACATCCGGATCAATTTGAGAAATATAAGAAACTGAAAGTGGAGGATTTAGCGGCAGATGCAGTTATGCAACAGGCAGAAATGTCCAAGTTGCAACCGAAAACTGGTAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAAGCATGTCTGATGTAACAA</pcr_primer_p1>
		<pcr_primer_p2>TTTCAGGAATATTTTTGACTTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTAAGCATGTCTGATGTAACAATACACAAATCCACAATTCTTCATTCGAAACAAAAACGAGTTTCCGTTCTGGGATCACCACCTATGTCAGAAGGTGATATTCTCGTCGTTAGCCATCCTTATCACTGATAGATTTCTCGTTTTCATCCAGTTCCCCTCCCTCCTTTCATCTTCCATCACAAGCATTTTTACTTTCCTCCCCCTATCCATTCATTTTCTTTCGAGAAAGTCAAAAATATTCCTGAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTAAGCATGTCTGATGTAACAATACACAAATCCACAATTCTTCATTCGAAACAAAAACGAGTTTCCGTTCTGGGATCACCACCTATGTCAGAAGGTGATATTCTCGTCGTTAGCCATCCTTATCACTGATAGATTTCTCGTTTTCATCCAGTTCCCCTCCCTCCTTTCATCTTCCATCACAAGCATTTTYACTTTCCTCCCCCTATCCATTCATTTTCTTTCGAGAAAGTCAAAAATATTCCTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1051</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>81224</contig_pos>
        <strand>+</strand>
        <context>GACAAAAAAG[A/G]GAACGAACGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATAAAGAGAAAAGCTAGACATTTTTCTACCAGAATTAGACAAAAAAG</left_flank>
        <right_flank>GAACGAACGAAACGAAAAAAAAACAAGGAAAAACCATCAAAAAATTACAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTCTTCCAGATGGAAAAAAGGGACTGTTTTGGGTGTTATAGGAAGAGAAATTCAACATTCCATCCAACCGATATATTGCCACACCGTTTAAAACTGAGATTTTTGTTTTTTAAAGGAGAGGAGTACTTAAATTCTTTGGAATCCAAATTTTGGATTTGTTCAGAGAAACAAAAAGAGTAGTGTAAAAACGAAGAGTATTTAATTTAATGAATTCAAAATGACGTGGCAATATACACAAACAGAGAAGAATTTGGGTTTTGAGAGAGAAAAGAAAAAATATTGGAAAATTTATAGAAAATGATAGAGGGGGCGGGGCTTGGGGAGGACAGGGAAAGGAGAAATCACATCGCTCAGTAAAGTTTCGAGGTAGATTACGGTATGGGAAGAATAGGGAAGAGTGCCAGTGAGCGTCGTCGAATCGAAACTGGAAAGGATGACAGGAGAGGAAAAATAAAGAGAAAAGCTAGACATTTTTCTACCAGAATTAGACAAAAAAGGGAACGAACGAAACGAAAAAAAAACAAGGAAAAACCATCAAAAAATTACAGAGAGAAATATCTTCTCAAGATTTTTAAAAAGGCAGGATGCCGGGAATGTGTGGGAAATTTTGATGAAGGAGAGATGCCTTTTTAAAAGGAGCATCGAGAAATTTACAGGGGGCGGGGCGAATAGATAAAGAGGTAGGATTCAAAGGGGGAAAAACAAAACCTGGATGAAAGGAAGAAGAGAGAAAAAAGAAGAAAAAGAGGTAATCAACGGTTTTTCGATATTTCATAATTGGGACGAAAAAAGAGGAAGAGGAAATAGAGACTGAGAAGAGGTGGTATTCGAAATTATTATTACACGGCGTCACTGGGATCAAAATGAAATTTAACGGATAGTGGGGTGCTTGAAAGGGAAAAACAAAAAGAATAACTGAGTAGCAGTTGAGAAGCTGAGGAACTGGGCGGTGATGATCATTGAGTGTTAAACGATTTGACTGATTGATTGGTTGACTT</canonical>
            <polymorphic>CTCTCTTCCAGATGGAAAAAAGGGACTGTTTTGGGTGTTATAGGAAGAGAAATTCAACATTCCATCCAACCGATATATTGCCACACCGTTTAAAACTGAGATTTTTGTTTTTTAAAGGAGAGGAGTACTTAAATTCTTTGGAATCCAAATTTTGGATTTGTTCAGAGAAACAAAAAGAGTAGTGTAAAAACGAAGAGTATTTAATTTAATGAATTCAAAATGACGTGGCAATATACACAAACAGAGAAGAATTTGGGTTTTGAGAGAGAAAAGAAAAAATATTGGAAAATTTATAGAAAATGATAGAGGGGGCGGGGCTTGGGGAGGACAGGGAAAGGAGAAATCACATCGCTCAGTAAAGTTTCGAGGTAGATTACGGTATGGGAAGAATAGGGAAGAGTGCCAGTGAGCGTCGTCGAATCGAAACTGGAAAGGATGACAGGAGAGGAAAAATAAAGAGAAAAGCTAGACATTTTTCTACCAGAATTAGACAAAAAAGRGAACGAACGAAACGAAAAAAAAACAAGGAAAAACCATCAAAAAATTACAGAGAGAAATATCTTCTCAAGATTTTTAAAAAGGCAGGATGCCGGGAATGTGTGGGAAATTTTGATGAAGGAGAGATGCCTTTTTAAAAGGAGCATCGAGAAATTTACAGGGGGCGGGGCGAATAGATAAAGAGGTAGGATTCAAAGGGGGAAAAACAAAACCTGGATGAAAGGAAGAAGAGAGAAAAAAGAAGAAAAAGAGGTAATCAACGGTTTTTCGATATTTCATAATTGGGACGAAAAAAGAGGAAGAGGAAATAGAGACTGAGAAGAGGTGGTATTCGAAATTATTATTACACGGCGTCACTGGGATCAAAATGAAATTTAACGGATAGTGGGGTGCTTGAAAGGGAAAAACAAAAAGAATAACTGAGTAGCAGTTGAGAAGCTGAGGAACTGGGCGGTGATGATCATTGAGTGTTAAACGATTTGACTGATTGATTGGTTGACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATGGGAAGAATAGGGAAGAG</pcr_primer_p1>
		<pcr_primer_p2>GCATCTCTCCTTCATCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTATGGGAAGAATAGGGAAGAGTGCCAGTGAGCGTCGTCGAATCGAAACTGGAAAGGATGACAGGAGAGGAAAAATAAAGAGAAAAGCTAGACATTTTTCTACCAGAATTAGACAAAAAAGGGAACGAACGAAACGAAAAAAAAACAAGGAAAAACCATCAAAAAATTACAGAGAGAAATATCTTCTCAAGATTTTTAAAAAGGCAGGATGCCGGGAATGTGTGGGAAATTTTGATGAAGGAGAGATGC</canonical_amplicon>
		<polymorphic_amplicon>GTATGGGAAGAATAGGGAAGAGTGCCAGTGAGCGTCGTCGAATCGAAACTGGAAAGGATGACAGGAGAGGAAAAATAAAGAGAAAAGCTAGACATTTTTCTACCAGAATTAGACAAAAAAGRGAACGAACGAAACGAAAAAAAAACAAGGAAAAACCATCAAAAAATTACAGAGAGAAATATCTTCTCAAGATTTTTAAAAAGGCAGGATGCCGGGAATGTGTGGGAAATTTTGATGAAGGAGAGATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1052</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>81241</contig_pos>
        <strand></strand>
        <context>ACGAAACGAA[A/G]AAAAAACAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGACATTTTTCTACCAGAATTAGACAAAAAAGGGAACGAACGAAACGAA</left_flank>
        <right_flank>AAAAAACAAGGAAAAACCATCAAAAAATTACAGAGAGAAATATCTTCTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGGGACTGTTTTGGGTGTTATAGGAAGAGAAATTCAACATTCCATCCAACCGATATATTGCCACACCGTTTAAAACTGAGATTTTTGTTTTTTAAAGGAGAGGAGTACTTAAATTCTTTGGAATCCAAATTTTGGATTTGTTCAGAGAAACAAAAAGAGTAGTGTAAAAACGAAGAGTATTTAATTTAATGAATTCAAAATGACGTGGCAATATACACAAACAGAGAAGAATTTGGGTTTTGAGAGAGAAAAGAAAAAATATTGGAAAATTTATAGAAAATGATAGAGGGGGCGGGGCTTGGGGAGGACAGGGAAAGGAGAAATCACATCGCTCAGTAAAGTTTCGAGGTAGATTACGGTATGGGAAGAATAGGGAAGAGTGCCAGTGAGCGTCGTCGAATCGAAACTGGAAAGGATGACAGGAGAGGAAAAATAAAGAGAAAAGCTAGACATTTTTCTACCAGAATTAGACAAAAAAGGGAACGAACGAAACGAAAAAAAAACAAGGAAAAACCATCAAAAAATTACAGAGAGAAATATCTTCTCAAGATTTTTAAAAAGGCAGGATGCCGGGAATGTGTGGGAAATTTTGATGAAGGAGAGATGCCTTTTTAAAAGGAGCATCGAGAAATTTACAGGGGGCGGGGCGAATAGATAAAGAGGTAGGATTCAAAGGGGGAAAAACAAAACCTGGATGAAAGGAAGAAGAGAGAAAAAAGAAGAAAAAGAGGTAATCAACGGTTTTTCGATATTTCATAATTGGGACGAAAAAAGAGGAAGAGGAAATAGAGACTGAGAAGAGGTGGTATTCGAAATTATTATTACACGGCGTCACTGGGATCAAAATGAAATTTAACGGATAGTGGGGTGCTTGAAAGGGAAAAACAAAAAGAATAACTGAGTAGCAGTTGAGAAGCTGAGGAACTGGGCGGTGATGATCATTGAGTGTTAAACGATTTGACTGATTGATTGGTTGACTTGGAGTGGGCTGGGTGGG</canonical>
            <polymorphic>AAAAGGGACTGTTTTGGGTGTTATAGGAAGAGAAATTCAACATTCCATCCAACCGATATATTGCCACACCGTTTAAAACTGAGATTTTTGTTTTTTAAAGGAGAGGAGTACTTAAATTCTTTGGAATCCAAATTTTGGATTTGTTCAGAGAAACAAAAAGAGTAGTGTAAAAACGAAGAGTATTTAATTTAATGAATTCAAAATGACGTGGCAATATACACAAACAGAGAAGAATTTGGGTTTTGAGAGAGAAAAGAAAAAATATTGGAAAATTTATAGAAAATGATAGAGGGGGCGGGGCTTGGGGAGGACAGGGAAAGGAGAAATCACATCGCTCAGTAAAGTTTCGAGGTAGATTACGGTATGGGAAGAATAGGGAAGAGTGCCAGTGAGCGTCGTCGAATCGAAACTGGAAAGGATGACAGGAGAGGAAAAATAAAGAGAAAAGCTAGACATTTTTCTACCAGAATTAGACAAAAAAGGGAACGAACGAAACGAARAAAAAACAAGGAAAAACCATCAAAAAATTACAGAGAGAAATATCTTCTCAAGATTTTTAAAAAGGCAGGATGCCGGGAATGTGTGGGAAATTTTGATGAAGGAGAGATGCCTTTTTAAAAGGAGCATCGAGAAATTTACAGGGGGCGGGGCGAATAGATAAAGAGGTAGGATTCAAAGGGGGAAAAACAAAACCTGGATGAAAGGAAGAAGAGAGAAAAAAGAAGAAAAAGAGGTAATCAACGGTTTTTCGATATTTCATAATTGGGACGAAAAAAGAGGAAGAGGAAATAGAGACTGAGAAGAGGTGGTATTCGAAATTATTATTACACGGCGTCACTGGGATCAAAATGAAATTTAACGGATAGTGGGGTGCTTGAAAGGGAAAAACAAAAAGAATAACTGAGTAGCAGTTGAGAAGCTGAGGAACTGGGCGGTGATGATCATTGAGTGTTAAACGATTTGACTGATTGATTGGTTGACTTGGAGTGGGCTGGGTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATGGGAAGAATAGGGAAGAG</pcr_primer_p1>
		<pcr_primer_p2>GCATCTCTCCTTCATCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTATGGGAAGAATAGGGAAGAGTGCCAGTGAGCGTCGTCGAATCGAAACTGGAAAGGATGACAGGAGAGGAAAAATAAAGAGAAAAGCTAGACATTTTTCTACCAGAATTAGACAAAAAAGGGAACGAACGAAACGAAAAAAAAACAAGGAAAAACCATCAAAAAATTACAGAGAGAAATATCTTCTCAAGATTTTTAAAAAGGCAGGATGCCGGGAATGTGTGGGAAATTTTGATGAAGGAGAGATGC</canonical_amplicon>
		<polymorphic_amplicon>GTATGGGAAGAATAGGGAAGAGTGCCAGTGAGCGTCGTCGAATCGAAACTGGAAAGGATGACAGGAGAGGAAAAATAAAGAGAAAAGCTAGACATTTTTCTACCAGAATTAGACAAAAAAGGGAACGAACGAAACGAARAAAAAACAAGGAAAAACCATCAAAAAATTACAGAGAGAAATATCTTCTCAAGATTTTTAAAAAGGCAGGATGCCGGGAATGTGTGGGAAATTTTGATGAAGGAGAGATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1053</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>81411</contig_pos>
        <strand>+</strand>
        <context>AAAGAGGTAG[A/G]ATTCAAAGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGAGCATCGAGAAATTTACAGGGGGCGGGGCGAATAGATAAAGAGGTAG</left_flank>
        <right_flank>ATTCAAAGGGGGAAAAACAAAACCTGGATGAAAGGAAGAAGAGAGAAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACGAAGAGTATTTAATTTAATGAATTCAAAATGACGTGGCAATATACACAAACAGAGAAGAATTTGGGTTTTGAGAGAGAAAAGAAAAAATATTGGAAAATTTATAGAAAATGATAGAGGGGGCGGGGCTTGGGGAGGACAGGGAAAGGAGAAATCACATCGCTCAGTAAAGTTTCGAGGTAGATTACGGTATGGGAAGAATAGGGAAGAGTGCCAGTGAGCGTCGTCGAATCGAAACTGGAAAGGATGACAGGAGAGGAAAAATAAAGAGAAAAGCTAGACATTTTTCTACCAGAATTAGACAAAAAAGGGAACGAACGAAACGAAAAAAAAACAAGGAAAAACCATCAAAAAATTACAGAGAGAAATATCTTCTCAAGATTTTTAAAAAGGCAGGATGCCGGGAATGTGTGGGAAATTTTGATGAAGGAGAGATGCCTTTTTAAAAGGAGCATCGAGAAATTTACAGGGGGCGGGGCGAATAGATAAAGAGGTAGGATTCAAAGGGGGAAAAACAAAACCTGGATGAAAGGAAGAAGAGAGAAAAAAGAAGAAAAAGAGGTAATCAACGGTTTTTCGATATTTCATAATTGGGACGAAAAAAGAGGAAGAGGAAATAGAGACTGAGAAGAGGTGGTATTCGAAATTATTATTACACGGCGTCACTGGGATCAAAATGAAATTTAACGGATAGTGGGGTGCTTGAAAGGGAAAAACAAAAAGAATAACTGAGTAGCAGTTGAGAAGCTGAGGAACTGGGCGGTGATGATCATTGAGTGTTAAACGATTTGACTGATTGATTGGTTGACTTGGAGTGGGCTGGGTGGGGTGCACAGATGAAATTTCGGAAAGATTTCTGAAAAATTGGAAAAAGTTAATAACAGCTACAGTAATCCAAAATTCTCACCTCATTCGTTGCTTTGCTCTCTTTCGAAACACCAAGATAAAACGTAGGATAAGCATATTTAATGAATTGATCCATGAATTTACAAATCGAA</canonical>
            <polymorphic>AAACGAAGAGTATTTAATTTAATGAATTCAAAATGACGTGGCAATATACACAAACAGAGAAGAATTTGGGTTTTGAGAGAGAAAAGAAAAAATATTGGAAAATTTATAGAAAATGATAGAGGGGGCGGGGCTTGGGGAGGACAGGGAAAGGAGAAATCACATCGCTCAGTAAAGTTTCGAGGTAGATTACGGTATGGGAAGAATAGGGAAGAGTGCCAGTGAGCGTCGTCGAATCGAAACTGGAAAGGATGACAGGAGAGGAAAAATAAAGAGAAAAGCTAGACATTTTTCTACCAGAATTAGACAAAAAAGGGAACGAACGAAACGAAAAAAAAACAAGGAAAAACCATCAAAAAATTACAGAGAGAAATATCTTCTCAAGATTTTTAAAAAGGCAGGATGCCGGGAATGTGTGGGAAATTTTGATGAAGGAGAGATGCCTTTTTAAAAGGAGCATCGAGAAATTTACAGGGGGCGGGGCGAATAGATAAAGAGGTAGRATTCAAAGGGGGAAAAACAAAACCTGGATGAAAGGAAGAAGAGAGAAAAAAGAAGAAAAAGAGGTAATCAACGGTTTTTCGATATTTCATAATTGGGACGAAAAAAGAGGAAGAGGAAATAGAGACTGAGAAGAGGTGGTATTCGAAATTATTATTACACGGCGTCACTGGGATCAAAATGAAATTTAACGGATAGTGGGGTGCTTGAAAGGGAAAAACAAAAAGAATAACTGAGTAGCAGTTGAGAAGCTGAGGAACTGGGCGGTGATGATCATTGAGTGTTAAACGATTTGACTGATTGATTGGTTGACTTGGAGTGGGCTGGGTGGGGTGCACAGATGAAATTTCGGAAAGATTTCTGAAAAATTGGAAAAAGTTAATAACAGCTACAGTAATCCAAAATTCTCACCTCATTCGTTGCTTTGCTCTCTTTCGAAACACCAAGATAAAACGTAGGATAAGCATATTTAATGAATTGATCCATGAATTTACAAATCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>500 269 231</canonical_bands>
                <polymorphic_bands>769 231</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 269 231</canonical_bands>
                <polymorphic_bands>769 231</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAAAAGGAGCATCGAGAAA</pcr_primer_p1>
		<pcr_primer_p2>TATCCGTTAAATTTCATTTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTAAAAGGAGCATCGAGAAATTTACAGGGGGCGGGGCGAATAGATAAAGAGGTAGGATTCAAAGGGGGAAAAACAAAACCTGGATGAAAGGAAGAAGAGAGAAAAAAGAAGAAAAAGAGGTAATCAACGGTTTTTCGATATTTCATAATTGGGACGAAAAAAGAGGAAGAGGAAATAGAGACTGAGAAGAGGTGGTATTCGAAATTATTATTACACGGCGTCACTGGGATCAAAATGAAATTTAACGGATA</canonical_amplicon>
		<polymorphic_amplicon>TTAAAAGGAGCATCGAGAAATTTACAGGGGGCGGGGCGAATAGATAAAGAGGTAGRATTCAAAGGGGGAAAAACAAAACCTGGATGAAAGGAAGAAGAGAGAAAAAAGAAGAAAAAGAGGTAATCAACGGTTTTTCGATATTTCATAATTGGGACGAAAAAAGAGGAAGAGGAAATAGAGACTGAGAAGAGGTGGTATTCGAAATTATTATTACACGGCGTCACTGGGATCAAAATGAAATTTAACGGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1054</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>81555</contig_pos>
        <strand>+</strand>
        <context>AGGTGGTATT[C/T]GAAAKTATTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGGACGAAAAAAGAGGAAGAGGAAATAGAGACTGAGAAGAGGTGGTATT</left_flank>
        <right_flank>GAAATTATTATTACACGGCGTCACTGGGATCAAAATGAAATTTAACGGAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAAAGGAGAAATCACATCGCTCAGTAAAGTTTCGAGGTAGATTACGGTATGGGAAGAATAGGGAAGAGTGCCAGTGAGCGTCGTCGAATCGAAACTGGAAAGGATGACAGGAGAGGAAAAATAAAGAGAAAAGCTAGACATTTTTCTACCAGAATTAGACAAAAAAGGGAACGAACGAAACGAAAAAAAAACAAGGAAAAACCATCAAAAAATTACAGAGAGAAATATCTTCTCAAGATTTTTAAAAAGGCAGGATGCCGGGAATGTGTGGGAAATTTTGATGAAGGAGAGATGCCTTTTTAAAAGGAGCATCGAGAAATTTACAGGGGGCGGGGCGAATAGATAAAGAGGTAGGATTCAAAGGGGGAAAAACAAAACCTGGATGAAAGGAAGAAGAGAGAAAAAAGAAGAAAAAGAGGTAATCAACGGTTTTTCGATATTTCATAATTGGGACGAAAAAAGAGGAAGAGGAAATAGAGACTGAGAAGAGGTGGTATTCGAAATTATTATTACACGGCGTCACTGGGATCAAAATGAAATTTAACGGATAGTGGGGTGCTTGAAAGGGAAAAACAAAAAGAATAACTGAGTAGCAGTTGAGAAGCTGAGGAACTGGGCGGTGATGATCATTGAGTGTTAAACGATTTGACTGATTGATTGGTTGACTTGGAGTGGGCTGGGTGGGGTGCACAGATGAAATTTCGGAAAGATTTCTGAAAAATTGGAAAAAGTTAATAACAGCTACAGTAATCCAAAATTCTCACCTCATTCGTTGCTTTGCTCTCTTTCGAAACACCAAGATAAAACGTAGGATAAGCATATTTAATGAATTGATCCATGAATTTACAAATCGAAATGAATACTTTGCCCTCCGGCCTGTGATAGCTCGTGCCGAATCAACGCATCCACATCCATATCCATCAATGGCTGATCTGGAAGTGTCAGATTCTCCAAATCGATTGGAAGAGCCGATGACGAGGCGAGCGTATTCTGAGCGGC</canonical>
            <polymorphic>GGAAAGGAGAAATCACATCGCTCAGTAAAGTTTCGAGGTAGATTACGGTATGGGAAGAATAGGGAAGAGTGCCAGTGAGCGTCGTCGAATCGAAACTGGAAAGGATGACAGGAGAGGAAAAATAAAGAGAAAAGCTAGACATTTTTCTACCAGAATTAGACAAAAAAGGGAACGAACGAAACGAAAAAAAAACAAGGAAAAACCATCAAAAAATTACAGAGAGAAATATCTTCTCAAGATTTTTAAAAAGGCAGGATGCCGGGAATGTGTGGGAAATTTTGATGAAGGAGAGATGCCTTTTTAAAAGGAGCATCGAGAAATTTACAGGGGGCGGGGCGAATAGATAAAGAGGTAGGATTCAAAGGGGGAAAAACAAAACCTGGATGAAAGGAAGAAGAGAGAAAAAAGAAGAAAAAGAGGTAATCAACGGTTTTTCGATATTTCATAATTGGGACGAAAAAAGAGGAAGAGGAAATAGAGACTGAGAAGAGGTGGTATTYGAAATTATTATTACACGGCGTCACTGGGATCAAAATGAAATTTAACGGATAGTGGGGTGCTTGAAAGGGAAAAACAAAAAGAATAACTGAGTAGCAGTTGAGAAGCTGAGGAACTGGGCGGTGATGATCATTGAGTGTTAAACGATTTGACTGATTGATTGGTTGACTTGGAGTGGGCTGGGTGGGGTGCACAGATGAAATTTCGGAAAGATTTCTGAAAAATTGGAAAAAGTTAATAACAGCTACAGTAATCCAAAATTCTCACCTCATTCGTTGCTTTGCTCTCTTTCGAAACACCAAGATAAAACGTAGGATAAGCATATTTAATGAATTGATCCATGAATTTACAAATCGAAATGAATACTTTGCCCTCCGGCCTGTGATAGCTCGTGCCGAATCAACGCATCCACATCCATATCCATCAATGGCTGATCTGGAAGTGTCAGATTCTCCAAATCGATTGGAAGAGCCGATGACGAGGCGAGCGTATTCTGAGCGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>499 290 211</canonical_bands>
                <polymorphic_bands>789 211</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>290 223 122 105 64 63 52 42 34 5</canonical_bands>
                <polymorphic_bands>354 223 122 105 63 52 42 34 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGAAGAAAAAGAGGTAATCAAC</pcr_primer_p1>
		<pcr_primer_p2>AATCAGTCAAATCGTTTAACACT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAAGAAGAAAAAGAGGTAATCAACGGTTTTTCGATATTTCATAATTGGGACGAAAAAAGAGGAAGAGGAAATAGAGACTGAGAAGAGGTGGTATTCGAAATTATTATTACACGGCGTCACTGGGATCAAAATGAAATTTAACGGATAGTGGGGTGCTTGAAAGGGAAAAACAAAAAGAATAACTGAGTAGCAGTTGAGAAGCTGAGGAACTGGGCGGTGATGATCATTGAGTGTTAAACGATTTGACTGATT</canonical_amplicon>
		<polymorphic_amplicon>AAAGAAGAAAAAGAGGTAATCAACGGTTTTTCGATATTTCATAATTGGGACGAAAAAAGAGGAAGAGGAAATAGAGACTGAGAAGAGGTGGTATTYGAAATTATTATTACACGGCGTCACTGGGATCAAAATGAAATTTAACGGATAGTGGGGTGCTTGAAAGGGAAAAACAAAAAGAATAACTGAGTAGCAGTTGAGAAGCTGAGGAACTGGGCGGTGATGATCATTGAGTGTTAAACGATTTGACTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1055</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>81560</contig_pos>
        <strand>+</strand>
        <context>GTATTYGAAA[G/T]TATTATTACA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGAAAAAAGAGGAAGAGGAAATAGAGACTGAGAAGAGGTGGTATTCGAAA</left_flank>
        <right_flank>TATTATTACACGGCGTCACTGGGATCAAAATGAAATTTAACGGATAGTGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGAAATCACATCGCTCAGTAAAGTTTCGAGGTAGATTACGGTATGGGAAGAATAGGGAAGAGTGCCAGTGAGCGTCGTCGAATCGAAACTGGAAAGGATGACAGGAGAGGAAAAATAAAGAGAAAAGCTAGACATTTTTCTACCAGAATTAGACAAAAAAGGGAACGAACGAAACGAAAAAAAAACAAGGAAAAACCATCAAAAAATTACAGAGAGAAATATCTTCTCAAGATTTTTAAAAAGGCAGGATGCCGGGAATGTGTGGGAAATTTTGATGAAGGAGAGATGCCTTTTTAAAAGGAGCATCGAGAAATTTACAGGGGGCGGGGCGAATAGATAAAGAGGTAGGATTCAAAGGGGGAAAAACAAAACCTGGATGAAAGGAAGAAGAGAGAAAAAAGAAGAAAAAGAGGTAATCAACGGTTTTTCGATATTTCATAATTGGGACGAAAAAAGAGGAAGAGGAAATAGAGACTGAGAAGAGGTGGTATTCGAAATTATTATTACACGGCGTCACTGGGATCAAAATGAAATTTAACGGATAGTGGGGTGCTTGAAAGGGAAAAACAAAAAGAATAACTGAGTAGCAGTTGAGAAGCTGAGGAACTGGGCGGTGATGATCATTGAGTGTTAAACGATTTGACTGATTGATTGGTTGACTTGGAGTGGGCTGGGTGGGGTGCACAGATGAAATTTCGGAAAGATTTCTGAAAAATTGGAAAAAGTTAATAACAGCTACAGTAATCCAAAATTCTCACCTCATTCGTTGCTTTGCTCTCTTTCGAAACACCAAGATAAAACGTAGGATAAGCATATTTAATGAATTGATCCATGAATTTACAAATCGAAATGAATACTTTGCCCTCCGGCCTGTGATAGCTCGTGCCGAATCAACGCATCCACATCCATATCCATCAATGGCTGATCTGGAAGTGTCAGATTCTCCAAATCGATTGGAAGAGCCGATGACGAGGCGAGCGTATTCTGAGCGGCCACAA</canonical>
            <polymorphic>GGAGAAATCACATCGCTCAGTAAAGTTTCGAGGTAGATTACGGTATGGGAAGAATAGGGAAGAGTGCCAGTGAGCGTCGTCGAATCGAAACTGGAAAGGATGACAGGAGAGGAAAAATAAAGAGAAAAGCTAGACATTTTTCTACCAGAATTAGACAAAAAAGGGAACGAACGAAACGAAAAAAAAACAAGGAAAAACCATCAAAAAATTACAGAGAGAAATATCTTCTCAAGATTTTTAAAAAGGCAGGATGCCGGGAATGTGTGGGAAATTTTGATGAAGGAGAGATGCCTTTTTAAAAGGAGCATCGAGAAATTTACAGGGGGCGGGGCGAATAGATAAAGAGGTAGGATTCAAAGGGGGAAAAACAAAACCTGGATGAAAGGAAGAAGAGAGAAAAAAGAAGAAAAAGAGGTAATCAACGGTTTTTCGATATTTCATAATTGGGACGAAAAAAGAGGAAGAGGAAATAGAGACTGAGAAGAGGTGGTATTCGAAAKTATTATTACACGGCGTCACTGGGATCAAAATGAAATTTAACGGATAGTGGGGTGCTTGAAAGGGAAAAACAAAAAGAATAACTGAGTAGCAGTTGAGAAGCTGAGGAACTGGGCGGTGATGATCATTGAGTGTTAAACGATTTGACTGATTGATTGGTTGACTTGGAGTGGGCTGGGTGGGGTGCACAGATGAAATTTCGGAAAGATTTCTGAAAAATTGGAAAAAGTTAATAACAGCTACAGTAATCCAAAATTCTCACCTCATTCGTTGCTTTGCTCTCTTTCGAAACACCAAGATAAAACGTAGGATAAGCATATTTAATGAATTGATCCATGAATTTACAAATCGAAATGAATACTTTGCCCTCCGGCCTGTGATAGCTCGTGCCGAATCAACGCATCCACATCCATATCCATCAATGGCTGATCTGGAAGTGTCAGATTCTCCAAATCGATTGGAAGAGCCGATGACGAGGCGAGCGTATTCTGAGCGGCCACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>164 160 148 128 73 63 58 56 44 36 36 22 12</canonical_bands>
                <polymorphic_bands>164 160 148 128 92 73 63 58 44 36 22 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGAAGAAAAAGAGGTAATCAAC</pcr_primer_p1>
		<pcr_primer_p2>AATCAGTCAAATCGTTTAACACT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAAGAAGAAAAAGAGGTAATCAACGGTTTTTCGATATTTCATAATTGGGACGAAAAAAGAGGAAGAGGAAATAGAGACTGAGAAGAGGTGGTATTCGAAATTATTATTACACGGCGTCACTGGGATCAAAATGAAATTTAACGGATAGTGGGGTGCTTGAAAGGGAAAAACAAAAAGAATAACTGAGTAGCAGTTGAGAAGCTGAGGAACTGGGCGGTGATGATCATTGAGTGTTAAACGATTTGACTGATT</canonical_amplicon>
		<polymorphic_amplicon>AAAGAAGAAAAAGAGGTAATCAACGGTTTTTCGATATTTCATAATTGGGACGAAAAAAGAGGAAGAGGAAATAGAGACTGAGAAGAGGTGGTATTCGAAAKTATTATTACACGGCGTCACTGGGATCAAAATGAAATTTAACGGATAGTGGGGTGCTTGAAAGGGAAAAACAAAAAGAATAACTGAGTAGCAGTTGAGAAGCTGAGGAACTGGGCGGTGATGATCATTGAGTGTTAAACGATTTGACTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1056</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>81622</contig_pos>
        <strand>+</strand>
        <context>GTGCTTGAAA[A/G]GGAAAAACAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGCGTCACTGGGATCAAAATGAAATTTAACGGATAGTGGGGTGCTTGAAA</left_flank>
        <right_flank>GGAAAAACAAAAAGAATAACTGAGTAGCAGTTGAGAAGCTGAGGAACTGG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGCCAGTGAGCGTCGTCGAATCGAAACTGGAAAGGATGACAGGAGAGGAAAAATAAAGAGAAAAGCTAGACATTTTTCTACCAGAATTAGACAAAAAAGGGAACGAACGAAACGAAAAAAAAACAAGGAAAAACCATCAAAAAATTACAGAGAGAAATATCTTCTCAAGATTTTTAAAAAGGCAGGATGCCGGGAATGTGTGGGAAATTTTGATGAAGGAGAGATGCCTTTTTAAAAGGAGCATCGAGAAATTTACAGGGGGCGGGGCGAATAGATAAAGAGGTAGGATTCAAAGGGGGAAAAACAAAACCTGGATGAAAGGAAGAAGAGAGAAAAAAGAAGAAAAAGAGGTAATCAACGGTTTTTCGATATTTCATAATTGGGACGAAAAAAGAGGAAGAGGAAATAGAGACTGAGAAGAGGTGGTATTCGAAATTATTATTACACGGCGTCACTGGGATCAAAATGAAATTTAACGGATAGTGGGGTGCTTGAAAGGGAAAAACAAAAAGAATAACTGAGTAGCAGTTGAGAAGCTGAGGAACTGGGCGGTGATGATCATTGAGTGTTAAACGATTTGACTGATTGATTGGTTGACTTGGAGTGGGCTGGGTGGGGTGCACAGATGAAATTTCGGAAAGATTTCTGAAAAATTGGAAAAAGTTAATAACAGCTACAGTAATCCAAAATTCTCACCTCATTCGTTGCTTTGCTCTCTTTCGAAACACCAAGATAAAACGTAGGATAAGCATATTTAATGAATTGATCCATGAATTTACAAATCGAAATGAATACTTTGCCCTCCGGCCTGTGATAGCTCGTGCCGAATCAACGCATCCACATCCATATCCATCAATGGCTGATCTGGAAGTGTCAGATTCTCCAAATCGATTGGAAGAGCCGATGACGAGGCGAGCGTATTCTGAGCGGCCACAATTCCGCATGATTGGATTCCGGGAAGTGGCGATGGAACGGAGGTGGTGAGCCATGGATTCGCG</canonical>
            <polymorphic>AGTGCCAGTGAGCGTCGTCGAATCGAAACTGGAAAGGATGACAGGAGAGGAAAAATAAAGAGAAAAGCTAGACATTTTTCTACCAGAATTAGACAAAAAAGGGAACGAACGAAACGAAAAAAAAACAAGGAAAAACCATCAAAAAATTACAGAGAGAAATATCTTCTCAAGATTTTTAAAAAGGCAGGATGCCGGGAATGTGTGGGAAATTTTGATGAAGGAGAGATGCCTTTTTAAAAGGAGCATCGAGAAATTTACAGGGGGCGGGGCGAATAGATAAAGAGGTAGGATTCAAAGGGGGAAAAACAAAACCTGGATGAAAGGAAGAAGAGAGAAAAAAGAAGAAAAAGAGGTAATCAACGGTTTTTCGATATTTCATAATTGGGACGAAAAAAGAGGAAGAGGAAATAGAGACTGAGAAGAGGTGGTATTCGAAATTATTATTACACGGCGTCACTGGGATCAAAATGAAATTTAACGGATAGTGGGGTGCTTGAAARGGAAAAACAAAAAGAATAACTGAGTAGCAGTTGAGAAGCTGAGGAACTGGGCGGTGATGATCATTGAGTGTTAAACGATTTGACTGATTGATTGGTTGACTTGGAGTGGGCTGGGTGGGGTGCACAGATGAAATTTCGGAAAGATTTCTGAAAAATTGGAAAAAGTTAATAACAGCTACAGTAATCCAAAATTCTCACCTCATTCGTTGCTTTGCTCTCTTTCGAAACACCAAGATAAAACGTAGGATAAGCATATTTAATGAATTGATCCATGAATTTACAAATCGAAATGAATACTTTGCCCTCCGGCCTGTGATAGCTCGTGCCGAATCAACGCATCCACATCCATATCCATCAATGGCTGATCTGGAAGTGTCAGATTCTCCAAATCGATTGGAAGAGCCGATGACGAGGCGAGCGTATTCTGAGCGGCCACAATTCCGCATGATTGGATTCCGGGAAGTGGCGATGGAACGGAGGTGGTGAGCCATGGATTCGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAAGAGGAAATAGAGACTGAG</pcr_primer_p1>
		<pcr_primer_p2>AAATCTTTCCGAAATTTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGGAAGAGGAAATAGAGACTGAGAAGAGGTGGTATTCGAAATTATTATTACACGGCGTCACTGGGATCAAAATGAAATTTAACGGATAGTGGGGTGCTTGAAAGGGAAAAACAAAAAGAATAACTGAGTAGCAGTTGAGAAGCTGAGGAACTGGGCGGTGATGATCATTGAGTGTTAAACGATTTGACTGATTGATTGGTTGACTTGGAGTGGGCTGGGTGGGGTGCACAGATGAAATTTCGGAAAGATTT</canonical_amplicon>
		<polymorphic_amplicon>AGGAAGAGGAAATAGAGACTGAGAAGAGGTGGTATTCGAAATTATTATTACACGGCGTCACTGGGATCAAAATGAAATTTAACGGATAGTGGGGTGCTTGAAARGGAAAAACAAAAAGAATAACTGAGTAGCAGTTGAGAAGCTGAGGAACTGGGCGGTGATGATCATTGAGTGTTAAACGATTTGACTGATTGATTGGTTGACTTGGAGTGGGCTGGGTGGGGTGCACAGATGAAATTTCGGAAAGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1057</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>81688</contig_pos>
        <strand>+</strand>
        <context>GATGATCATT[A/G]AGTGTTAAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAACTGAGTAGCAGTTGAGAAGCTGAGGAACTGGGCGGTGATGATCATT</left_flank>
        <right_flank>AGTGTTAAACGATTTGACTGATTGATTGGTTGACTTGGAGTGGGCTGGGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTAGACATTTTTCTACCAGAATTAGACAAAAAAGGGAACGAACGAAACGAAAAAAAAACAAGGAAAAACCATCAAAAAATTACAGAGAGAAATATCTTCTCAAGATTTTTAAAAAGGCAGGATGCCGGGAATGTGTGGGAAATTTTGATGAAGGAGAGATGCCTTTTTAAAAGGAGCATCGAGAAATTTACAGGGGGCGGGGCGAATAGATAAAGAGGTAGGATTCAAAGGGGGAAAAACAAAACCTGGATGAAAGGAAGAAGAGAGAAAAAAGAAGAAAAAGAGGTAATCAACGGTTTTTCGATATTTCATAATTGGGACGAAAAAAGAGGAAGAGGAAATAGAGACTGAGAAGAGGTGGTATTCGAAATTATTATTACACGGCGTCACTGGGATCAAAATGAAATTTAACGGATAGTGGGGTGCTTGAAAGGGAAAAACAAAAAGAATAACTGAGTAGCAGTTGAGAAGCTGAGGAACTGGGCGGTGATGATCATTGAGTGTTAAACGATTTGACTGATTGATTGGTTGACTTGGAGTGGGCTGGGTGGGGTGCACAGATGAAATTTCGGAAAGATTTCTGAAAAATTGGAAAAAGTTAATAACAGCTACAGTAATCCAAAATTCTCACCTCATTCGTTGCTTTGCTCTCTTTCGAAACACCAAGATAAAACGTAGGATAAGCATATTTAATGAATTGATCCATGAATTTACAAATCGAAATGAATACTTTGCCCTCCGGCCTGTGATAGCTCGTGCCGAATCAACGCATCCACATCCATATCCATCAATGGCTGATCTGGAAGTGTCAGATTCTCCAAATCGATTGGAAGAGCCGATGACGAGGCGAGCGTATTCTGAGCGGCCACAATTCCGCATGATTGGATTCCGGGAAGTGGCGATGGAACGGAGGTGGTGAGCCATGGATTCGCGCCATTCTGATAACCTCCGAATGCTCCTGGGAGTGGCATTCTGAAAGACTTTCAACGATAAACAATT</canonical>
            <polymorphic>GCTAGACATTTTTCTACCAGAATTAGACAAAAAAGGGAACGAACGAAACGAAAAAAAAACAAGGAAAAACCATCAAAAAATTACAGAGAGAAATATCTTCTCAAGATTTTTAAAAAGGCAGGATGCCGGGAATGTGTGGGAAATTTTGATGAAGGAGAGATGCCTTTTTAAAAGGAGCATCGAGAAATTTACAGGGGGCGGGGCGAATAGATAAAGAGGTAGGATTCAAAGGGGGAAAAACAAAACCTGGATGAAAGGAAGAAGAGAGAAAAAAGAAGAAAAAGAGGTAATCAACGGTTTTTCGATATTTCATAATTGGGACGAAAAAAGAGGAAGAGGAAATAGAGACTGAGAAGAGGTGGTATTCGAAATTATTATTACACGGCGTCACTGGGATCAAAATGAAATTTAACGGATAGTGGGGTGCTTGAAAGGGAAAAACAAAAAGAATAACTGAGTAGCAGTTGAGAAGCTGAGGAACTGGGCGGTGATGATCATTRAGTGTTAAACGATTTGACTGATTGATTGGTTGACTTGGAGTGGGCTGGGTGGGGTGCACAGATGAAATTTCGGAAAGATTTCTGAAAAATTGGAAAAAGTTAATAACAGCTACAGTAATCCAAAATTCTCACCTCATTCGTTGCTTTGCTCTCTTTCGAAACACCAAGATAAAACGTAGGATAAGCATATTTAATGAATTGATCCATGAATTTACAAATCGAAATGAATACTTTGCCCTCCGGCCTGTGATAGCTCGTGCCGAATCAACGCATCCACATCCATATCCATCAATGGCTGATCTGGAAGTGTCAGATTCTCCAAATCGATTGGAAGAGCCGATGACGAGGCGAGCGTATTCTGAGCGGCCACAATTCCGCATGATTGGATTCCGGGAAGTGGCGATGGAACGGAGGTGGTGAGCCATGGATTCGCGCCATTCTGATAACCTCCGAATGCTCCTGGGAGTGGCATTCTGAAAGACTTTCAACGATAAACAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAAGAGGAAATAGAGACTGAG</pcr_primer_p1>
		<pcr_primer_p2>AAATCTTTCCGAAATTTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGGAAGAGGAAATAGAGACTGAGAAGAGGTGGTATTCGAAATTATTATTACACGGCGTCACTGGGATCAAAATGAAATTTAACGGATAGTGGGGTGCTTGAAAGGGAAAAACAAAAAGAATAACTGAGTAGCAGTTGAGAAGCTGAGGAACTGGGCGGTGATGATCATTGAGTGTTAAACGATTTGACTGATTGATTGGTTGACTTGGAGTGGGCTGGGTGGGGTGCACAGATGAAATTTCGGAAAGATTT</canonical_amplicon>
		<polymorphic_amplicon>AGGAAGAGGAAATAGAGACTGAGAAGAGGTGGTATTCGAAATTATTATTACACGGCGTCACTGGGATCAAAATGAAATTTAACGGATAGTGGGGTGCTTGAAAGGGAAAAACAAAAAGAATAACTGAGTAGCAGTTGAGAAGCTGAGGAACTGGGCGGTGATGATCATTRAGTGTTAAACGATTTGACTGATTGATTGGTTGACTTGGAGTGGGCTGGGTGGGGTGCACAGATGAAATTTCGGAAAGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1058</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>83505</contig_pos>
        <strand>+</strand>
        <context>GGAAAAAAGC[G/T]TTTAAATTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTGGTCATTATGGTCCCAAATACGAAATAGTATGGGAGAAGGAAAAAAGC</left_flank>
        <right_flank>TTTAAATTAGGCTGGTGTCGCACCACTCTTCATTAGGAATTCATGAAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATAATGTTTTGTTTTGTCTGGAAATAGTTACACTGGAATCGCTCTTCTGAATCTATTATCCCTCTCCCAATTTTCCCATTTTTCTGACCAAATGACCGATTCTCTTTCTTTTTTTTCTGACTCTCATTTCTCTTACTGCTCCTTCGGAGCAACATGAAAACATTTTTGAAGGAGGCAGGACAGAAAAAAAAATAGTTCAGCATCTACCATAGACATAGACGACGAAAGAAGGAAACAACTAATAGGGTTGGGGTGTGGTTCTTTTTGTGTTGGCCTCTGGATGTTGCAGAAAAGAAGCGAGAAGAGGGTCCCCTTCTTCTTCTCCTTCGTGGAGCATGATGGGCTCTCTCTGTGTGGAGGGACGTGCCAGCCACCACATTCTCTTTTTCATGAGAAAGAGGAAGGAAAAAGAAGGGGAGGAGAGGGTGGTTGGCAAAGAAGCATCCTCTGGTCATTATGGTCCCAAATACGAAATAGTATGGGAGAAGGAAAAAAGCGTTTAAATTAGGCTGGTGTCGCACCACTCTTCATTAGGAATTCATGAAAAATTGGGCGAATTCCGCAAAATTCGAAAATTTCGACTTAAAATACAAAATTCGTCATGAAGATCATAATACCAAAATTTCGCGAATTTCAAAGTTCCCATTTTTCTAAAGGATGTTCCCTCTTGATAATATGCCTTTTCTACGGAGACCCGACATAAAAAGGACAAGAAAAAGTGTCAAGGACATGCATATATCTCTTACCTTCCATCCGGCGGCCTCTTCTTGGCTGGATCGTTCCCGAAAGTAGAGAATATTATCGGAAAACCACTGATAAATCTCGTTGAGTTTCAACCGACCATCTGGCGCCGATTCCAGGGCTTTGGCGATGATGTCCGAGTAGGACTCCTCACCCCATGGATTCGGTTTCTTTTGAGCCAGCTGATCAGTTGGCTTCTTACGGCACCGCTTCTTCTTGGCTGGCATCGGACCACCGCCTTGTGACAGGTTAAGTGA</canonical>
            <polymorphic>AGATAATGTTTTGTTTTGTCTGGAAATAGTTACACTGGAATCGCTCTTCTGAATCTATTATCCCTCTCCCAATTTTCCCATTTTTCTGACCAAATGACCGATTCTCTTTCTTTTTTTTCTGACTCTCATTTCTCTTACTGCTCCTTCGGAGCAACATGAAAACATTTTTGAAGGAGGCAGGACAGAAAAAAAAATAGTTCAGCATCTACCATAGACATAGACGACGAAAGAAGGAAACAACTAATAGGGTTGGGGTGTGGTTCTTTTTGTGTTGGCCTCTGGATGTTGCAGAAAAGAAGCGAGAAGAGGGTCCCCTTCTTCTTCTCCTTCGTGGAGCATGATGGGCTCTCTCTGTGTGGAGGGACGTGCCAGCCACCACATTCTCTTTTTCATGAGAAAGAGGAAGGAAAAAGAAGGGGAGGAGAGGGTGGTTGGCAAAGAAGCATCCTCTGGTCATTATGGTCCCAAATACGAAATAGTATGGGAGAAGGAAAAAAGCKTTTAAATTAGGCTGGTGTCGCACCACTCTTCATTAGGAATTCATGAAAAATTGGGCGAATTCCGCAAAATTCGAAAATTTCGACTTAAAATACAAAATTCGTCATGAAGATCATAATACCAAAATTTCGCGAATTTCAAAGTTCCCATTTTTCTAAAGGATGTTCCCTCTTGATAATATGCCTTTTCTACGGAGACCCGACATAAAAAGGACAAGAAAAAGTGTCAAGGACATGCATATATCTCTTACCTTCCATCCGGCGGCCTCTTCTTGGCTGGATCGTTCCCGAAAGTAGAGAATATTATCGGAAAACCACTGATAAATCTCGTTGAGTTTCAACCGACCATCTGGCGCCGATTCCAGGGCTTTGGCGATGATGTCCGAGTAGGACTCCTCACCCCATGGATTCGGTTTCTTTTGAGCCAGCTGATCAGTTGGCTTCTTACGGCACCGCTTCTTCTTGGCTGGCATCGGACCACCGCCTTGTGACAGGTTAAGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGCATCCTCTGGTCATTAT</pcr_primer_p1>
		<pcr_primer_p2>CGTAGAAAAGGCATATTATCAAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GAAGCATCCTCTGGTCATTATGGTCCCAAATACGAAATAGTATGGGAGAAGGAAAAAAGCGTTTAAATTAGGCTGGTGTCGCACCACTCTTCATTAGGAATTCATGAAAAATTGGGCGAATTCCGCAAAATTCGAAAATTTCGACTTAAAATACAAAATTCGTCATGAAGATCATAATACCAAAATTTCGCGAATTTCAAAGTTCCCATTTTTCTAAAGGATGTTCCCTCTTGATAATATGCCTTTTCTACG</canonical_amplicon>
		<polymorphic_amplicon>GAAGCATCCTCTGGTCATTATGGTCCCAAATACGAAATAGTATGGGAGAAGGAAAAAAGCKTTTAAATTAGGCTGGTGTCGCACCACTCTTCATTAGGAATTCATGAAAAATTGGGCGAATTCCGCAAAATTCGAAAATTTCGACTTAAAATACAAAATTCGTCATGAAGATCATAATACCAAAATTTCGCGAATTTCAAAGTTCCCATTTTTCTAAAGGATGTTCCCTCTTGATAATATGCCTTTTCTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1059</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>83477</contig_pos>
        <strand>+</strand>
        <context>GTCCCAAATA[A/C]GAAATAGTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAGAGGGTGGTTGGCAAAGAAGCATCCTCTGGTCATTATGGTCCCAAATA</left_flank>
        <right_flank>GAAATAGTATGGGAGAAGGAAAAAAGCGTTTAAATTAGGCTGGTGTCGCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGTCGGATCGAGTTCTGAAATGATTTAGATAATGTTTTGTTTTGTCTGGAAATAGTTACACTGGAATCGCTCTTCTGAATCTATTATCCCTCTCCCAATTTTCCCATTTTTCTGACCAAATGACCGATTCTCTTTCTTTTTTTTCTGACTCTCATTTCTCTTACTGCTCCTTCGGAGCAACATGAAAACATTTTTGAAGGAGGCAGGACAGAAAAAAAAATAGTTCAGCATCTACCATAGACATAGACGACGAAAGAAGGAAACAACTAATAGGGTTGGGGTGTGGTTCTTTTTGTGTTGGCCTCTGGATGTTGCAGAAAAGAAGCGAGAAGAGGGTCCCCTTCTTCTTCTCCTTCGTGGAGCATGATGGGCTCTCTCTGTGTGGAGGGACGTGCCAGCCACCACATTCTCTTTTTCATGAGAAAGAGGAAGGAAAAAGAAGGGGAGGAGAGGGTGGTTGGCAAAGAAGCATCCTCTGGTCATTATGGTCCCAAATACGAAATAGTATGGGAGAAGGAAAAAAGCGTTTAAATTAGGCTGGTGTCGCACCACTCTTCATTAGGAATTCATGAAAAATTGGGCGAATTCCGCAAAATTCGAAAATTTCGACTTAAAATACAAAATTCGTCATGAAGATCATAATACCAAAATTTCGCGAATTTCAAAGTTCCCATTTTTCTAAAGGATGTTCCCTCTTGATAATATGCCTTTTCTACGGAGACCCGACATAAAAAGGACAAGAAAAAGTGTCAAGGACATGCATATATCTCTTACCTTCCATCCGGCGGCCTCTTCTTGGCTGGATCGTTCCCGAAAGTAGAGAATATTATCGGAAAACCACTGATAAATCTCGTTGAGTTTCAACCGACCATCTGGCGCCGATTCCAGGGCTTTGGCGATGATGTCCGAGTAGGACTCCTCACCCCATGGATTCGGTTTCTTTTGAGCCAGCTGATCAGTTGGCTTCTTACGGCACCGCTTCTTCTTGGCTGGCATCG</canonical>
            <polymorphic>TGTGTCGGATCGAGTTCTGAAATGATTTAGATAATGTTTTGTTTTGTCTGGAAATAGTTACACTGGAATCGCTCTTCTGAATCTATTATCCCTCTCCCAATTTTCCCATTTTTCTGACCAAATGACCGATTCTCTTTCTTTTTTTTCTGACTCTCATTTCTCTTACTGCTCCTTCGGAGCAACATGAAAACATTTTTGAAGGAGGCAGGACAGAAAAAAAAATAGTTCAGCATCTACCATAGACATAGACGACGAAAGAAGGAAACAACTAATAGGGTTGGGGTGTGGTTCTTTTTGTGTTGGCCTCTGGATGTTGCAGAAAAGAAGCGAGAAGAGGGTCCCCTTCTTCTTCTCCTTCGTGGAGCATGATGGGCTCTCTCTGTGTGGAGGGACGTGCCAGCCACCACATTCTCTTTTTCATGAGAAAGAGGAAGGAAAAAGAAGGGGAGGAGAGGGTGGTTGGCAAAGAAGCATCCTCTGGTCATTATGGTCCCAAATAMGAAATAGTATGGGAGAAGGAAAAAAGCGTTTAAATTAGGCTGGTGTCGCACCACTCTTCATTAGGAATTCATGAAAAATTGGGCGAATTCCGCAAAATTCGAAAATTTCGACTTAAAATACAAAATTCGTCATGAAGATCATAATACCAAAATTTCGCGAATTTCAAAGTTCCCATTTTTCTAAAGGATGTTCCCTCTTGATAATATGCCTTTTCTACGGAGACCCGACATAAAAAGGACAAGAAAAAGTGTCAAGGACATGCATATATCTCTTACCTTCCATCCGGCGGCCTCTTCTTGGCTGGATCGTTCCCGAAAGTAGAGAATATTATCGGAAAACCACTGATAAATCTCGTTGAGTTTCAACCGACCATCTGGCGCCGATTCCAGGGCTTTGGCGATGATGTCCGAGTAGGACTCCTCACCCCATGGATTCGGTTTCTTTTGAGCCAGCTGATCAGTTGGCTTCTTACGGCACCGCTTCTTCTTGGCTGGCATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAGAAAGAGGAAGGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CGAAATTTTGGTATTATGATCTTC</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>ATGAGAAAGAGGAAGGAAAAAGAAGGGGAGGAGAGGGTGGTTGGCAAAGAAGCATCCTCTGGTCATTATGGTCCCAAATACGAAATAGTATGGGAGAAGGAAAAAAGCGTTTAAATTAGGCTGGTGTCGCACCACTCTTCATTAGGAATTCATGAAAAATTGGGCGAATTCCGCAAAATTCGAAAATTTCGACTTAAAATACAAAATTCGTCATGAAGATCATAATACCAAAATTTCG</canonical_amplicon>
		<polymorphic_amplicon>ATGAGAAAGAGGAAGGAAAAAGAAGGGGAGGAGAGGGTGGTTGGCAAAGAAGCATCCTCTGGTCATTATGGTCCCAAATAMGAAATAGTATGGGAGAAGGAAAAAAGCGTTTAAATTAGGCTGGTGTCGCACCACTCTTCATTAGGAATTCATGAAAAATTGGGCGAATTCCGCAAAATTCGAAAATTTCGACTTAAAATACAAAATTCGTCATGAAGATCATAATACCAAAATTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1060</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>103481</contig_pos>
        <strand>+</strand>
        <context>TTTTTAGCTG[A/C]TGTGAAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTTTCGATTTTTCCCCGAAAAATAGGTTCAAAACAACTATTTTTAGCTG</left_flank>
        <right_flank>TGTGAAAATTGGGAAAATTGATTTCGAAATTCGCCGCTGGGTTACGGTAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAATTAGACCACCAGAAAAATCACCGGAAAACAAAAAAATGAAACTCATCGCGTACCTGTTTGTTCCACTGTCTACAGTCTCCAACGAAGTTTTGAAAAACGGGCGACCGATTATTTTCCGTTGCATAAACTGTTGAGAATACTGAGTAGTGCCACCGAACGACTGCGAGCGTCCTCTGTTGAGCTCCTGATCCCAGAAGGTCTCTGAAAACAATTTGAAGGTAAAAAATTGATTGGCATCAAAAAATTTCCGGGATATCCCGGAGAATTTCCAACAATTAAAAAAAATATGCTGATTACCATCAAAATCACTGGCAATACTCATTGCGGAGTCGGTTTCAACTGGTTTAAGACTGTGCAAAGTTACGTCCGATGATAGCGGGGAATCGGTCTGAAAAAACGAGATATTTTTCTAATGATTTTTAACAGACACACAGGCTGTGCAAACTTTTCGATTTTTCCCCGAAAAATAGGTTCAAAACAACTATTTTTAGCTGATGTGAAAATTGGGAAAATTGATTTCGAAATTCGCCGCTGGGTTACGGTAGTTTTGAGTGTATGCATTCAAAGTGTGTCTGCGTACGAGAAACAACATACCTCACGATATTCCCAGGCTTGCATGTCACGAGAGAAGTTTTCAAGAAAGTTTTGACAATCAAAGCAACGATTTGAAGTTTTTTGCTGAAATTTTGGGAAAATTTGAATTCCATTTCAGCTTACAAAGATTTGAAGCGAAACAACCTTAATATTCATGTCAGAAACCACAGTAAAAGGGGGCAAGAGTGAATACAAGAACGTGTATTTTGAAATGAGCAACACCAGGGAAAATAACAATTTTATATGTCAAAAGTTATTTCAAAATGGACTGTCTGGAAGTGATAAGAAGGAAAAAAGAGAAGAAGCTTATTTTGAAACACAAAAGCATGATTTTCGGCATTATTTCAAACCAGACAGGGCAACTGAAGGAAAGGAACGTATTCTGCAAAATTTTCCTTATC</canonical>
            <polymorphic>CAAAATTAGACCACCAGAAAAATCACCGGAAAACAAAAAAATGAAACTCATCGCGTACCTGTTTGTTCCACTGTCTACAGTCTCCAACGAAGTTTTGAAAAACGGGCGACCGATTATTTTCCGTTGCATAAACTGTTGAGAATACTGAGTAGTGCCACCGAACGACTGCGAGCGTCCTCTGTTGAGCTCCTGATCCCAGAAGGTCTCTGAAAACAATTTGAAGGTAAAAAATTGATTGGCATCAAAAAATTTCCGGGATATCCCGGAGAATTTCCAACAATTAAAAAAAATATGCTGATTACCATCAAAATCACTGGCAATACTCATTGCGGAGTCGGTTTCAACTGGTTTAAGACTGTGCAAAGTTACGTCCGATGATAGCGGGGAATCGGTCTGAAAAAACGAGATATTTTTCTAATGATTTTTAACAGACACACAGGCTGTGCAAACTTTTCGATTTTTCCCCGAAAAATAGGTTCAAAACAACTATTTTTAGCTGMTGTGAAAATTGGGAAAATTGATTTCGAAATTCGCCGCTGGGTTACGGTAGTTTTGAGTGTATGCATTCAAAGTGTGTCTGCGTACGAGAAACAACATACCTCACGATATTCCCAGGCTTGCATGTCACGAGAGAAGTTTTCAAGAAAGTTTTGACAATCAAAGCAACGATTTGAAGTTTTTTGCTGAAATTTTGGGAAAATTTGAATTCCATTTCAGCTTACAAAGATTTGAAGCGAAACAACCTTAATATTCATGTCAGAAACCACAGTAAAAGGGGGCAAGAGTGAATACAAGAACGTGTATTTTGAAATGAGCAACACCAGGGAAAATAACAATTTTATATGTCAAAAGTTATTTCAAAATGGACTGTCTGGAAGTGATAAGAAGGAAAAAAGAGAAGAAGCTTATTTTGAAACACAAAAGCATGATTTTCGGCATTATTTCAAACCAGACAGGGCAACTGAAGGAAAGGAACGTATTCTGCAAAATTTTCCTTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATTTTTAACAGACACACAGG</pcr_primer_p1>
		<pcr_primer_p2>GCTTTGATTGTCAAAACTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATGATTTTTAACAGACACACAGGCTGTGCAAACTTTTCGATTTTTCCCCGAAAAATAGGTTCAAAACAACTATTTTTAGCTGATGTGAAAATTGGGAAAATTGATTTCGAAATTCGCCGCTGGGTTACGGTAGTTTTGAGTGTATGCATTCAAAGTGTGTCTGCGTACGAGAAACAACATACCTCACGATATTCCCAGGCTTGCATGTCACGAGAGAAGTTTTCAAGAAAGTTTTGACAATCAAAGC</canonical_amplicon>
		<polymorphic_amplicon>ATGATTTTTAACAGACACACAGGCTGTGCAAACTTTTCGATTTTTCCCCGAAAAATAGGTTCAAAACAACTATTTTTAGCTGMTGTGAAAATTGGGAAAATTGATTTCGAAATTCGCCGCTGGGTTACGGTAGTTTTGAGTGTATGCATTCAAAGTGTGTCTGCGTACGAGAAACAACATACCTCACGATATTCCCAGGCTTGCATGTCACGAGAGAAGTTTTCAAGAAAGTTTTGACAATCAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1061</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>126007</contig_pos>
        <strand>+</strand>
        <context>TGAATGATCT[C/T]ATAAACGAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGAACGCATTTGTGCTCCTGAAATTGTACATTTTCATTTTGAATGATCT</left_flank>
        <right_flank>ATAAACGAACAGTTTGCAGTGTGATGATATGATTTTTGCCAGATTGCTTC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATCACAATTCCTGTAAAAGATATTAATATCTTACCAACTGATAAAATCTTGCTGATGTTATGATAATTAATTCATCAGTTGTCAAAATTTGGATATCTTTTACAGGAAACGAGATAATTAAGCTCGAAGTTGATGGTTTAATGGGGTTTTTTACCTAGCTGAATAACCCCCATAAGTGGGCTTCTATGAGAGAAAATACGGTATTTTTTGGAAAAAAAACTGTACCAATTTGTTTAATCGGCTGAACGACTCCAATCTCATTATTGACGAACATAATGGAAACAAGACACGTTTCAGGGGTGATTGATTGCTCAAGTTGCTGAAAACCCATAATTCTCAAAATATTCAAAATTCAAATTTTCTCACTTCCATATCAACCATTCCTCCCTTATCAACTGGCAAATATGTGACTTTGAATCCCTCGTTTTCCAAATATCGACATGAATCTAGAACGCATTTGTGCTCCTGAAATTGTACATTTTCATTTTGAATGATCTTATAAACGAACAGTTTGCAGTGTGATGATATGATTTTTGCCAGATTGCTTCCTGAATTTTGCCACTCCTTTAATTGCTAGATTATTCGATTCAGTGGCTCCAGAAGTGAAAACAATGTCACGTGGATCTGCTTTTATAAGATCCGCGACATATTTTCTCGCTTGCTCGACGCCTTCCTCTGCTTTCCACCCATAGGAGTGAGTTCTAGAGTGAGGATTTCCGAAATCATTGATCATGTACGGAAGCATTGCGTCAACCACTCTCGGATCCTGGACCAATATTTTCAGAATATTTATTTTCTAGCAGATCTTACCATTGGCGACGTTGCCTGAACATCCAGATAAATAGGTTGAGGCGCTCCGGGCTCAATTTTTGAAGCCATTGTTCGTCGAGCGATAGCTCGAAGTAAAAAGCGTCCTTTCAGCATTTTTCGACACTATAATACTATCACTAAACCCCCAAAATCTCGACTAGAACATCATGAAAATAGTAGGTTTCAGA</canonical>
            <polymorphic>TTATCACAATTCCTGTAAAAGATATTAATATCTTACCAACTGATAAAATCTTGCTGATGTTATGATAATTAATTCATCAGTTGTCAAAATTTGGATATCTTTTACAGGAAACGAGATAATTAAGCTCGAAGTTGATGGTTTAATGGGGTTTTTTACCTAGCTGAATAACCCCCATAAGTGGGCTTCTATGAGAGAAAATACGGTATTTTTTGGAAAAAAAACTGTACCAATTTGTTTAATCGGCTGAACGACTCCAATCTCATTATTGACGAACATAATGGAAACAAGACACGTTTCAGGGGTGATTGATTGCTCAAGTTGCTGAAAACCCATAATTCTCAAAATATTCAAAATTCAAATTTTCTCACTTCCATATCAACCATTCCTCCCTTATCAACTGGCAAATATGTGACTTTGAATCCCTCGTTTTCCAAATATCGACATGAATCTAGAACGCATTTGTGCTCCTGAAATTGTACATTTTCATTTTGAATGATCTYATAAACGAACAGTTTGCAGTGTGATGATATGATTTTTGCCAGATTGCTTCCTGAATTTTGCCACTCCTTTAATTGCTAGATTATTCGATTCAGTGGCTCCAGAAGTGAAAACAATGTCACGTGGATCTGCTTTTATAAGATCCGCGACATATTTTCTCGCTTGCTCGACGCCTTCCTCTGCTTTCCACCCATAGGAGTGAGTTCTAGAGTGAGGATTTCCGAAATCATTGATCATGTACGGAAGCATTGCGTCAACCACTCTCGGATCCTGGACCAATATTTTCAGAATATTTATTTTCTAGCAGATCTTACCATTGGCGACGTTGCCTGAACATCCAGATAAATAGGTTGAGGCGCTCCGGGCTCAATTTTTGAAGCCATTGTTCGTCGAGCGATAGCTCGAAGTAAAAAGCGTCCTTTCAGCATTTTTCGACACTATAATACTATCACTAAACCCCCAAAATCTCGACTAGAACATCATGAAAATAGTAGGTTTCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 365 134</canonical_bands>
                <polymorphic_bands>635 365</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAACCCATAATTCTCAAAATA</pcr_primer_p1>
		<pcr_primer_p2>ATTAAAGGAGTGGCAAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAACCCATAATTCTCAAAATATTCAAAATTCAAATTTTCTCACTTCCATATCAACCATTCCTCCCTTATCAACTGGCAAATATGTGACTTTGAATCCCTCGTTTTCCAAATATCGACATGAATCTAGAACGCATTTGTGCTCCTGAAATTGTACATTTTCATTTTGAATGATCTTATAAACGAACAGTTTGCAGTGTGATGATATGATTTTTGCCAGATTGCTTCCTGAATTTTGCCACTCCTTTAAT</canonical_amplicon>
		<polymorphic_amplicon>GAAAACCCATAATTCTCAAAATATTCAAAATTCAAATTTTCTCACTTCCATATCAACCATTCCTCCCTTATCAACTGGCAAATATGTGACTTTGAATCCCTCGTTTTCCAAATATCGACATGAATCTAGAACGCATTTGTGCTCCTGAAATTGTACATTTTCATTTTGAATGATCTYATAAACGAACAGTTTGCAGTGTGATGATATGATTTTTGCCAGATTGCTTCCTGAATTTTGCCACTCCTTTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1062</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>169177</contig_pos>
        <strand>+</strand>
        <context>TATGCTTCGA[A/C]AACTTCACAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTATTTAAAAGTTCAGATTATGGTAATTGAATATTTTTTATGCTTCGA</left_flank>
        <right_flank>AACTTCACAAAAACTATACAACACCGGTTTCCATAATAGGAAATTGTATG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGAAGGGAAAGGGGAAGAGACGTTCAAAAGTTACGTCAGGCATCTATGAAAAAAAAACGATGATGGGAAAAAATCAGATAGATCAATCTGTGTCTAGAACATTTTTCTGTTTTAAAGTTTCGATGAATTCTGAAGAATTTTTTTAATAGTAAATGGGAGTTTCGTTTGGTAATAGTGACTAATCAGAAACCAGAGAAGTTCAGAATCTTGGTTTTTCCGGTCCCAAAGTTTCAGAATGTTTGAAAACTTTTGAACCTGAGGAAGCGGGATTCAAAGATTTTTAGAATTCAAAAAAATCTAAAAGGCCCCTCTAATACAAGTTTTACAGTAAGAAATCCAGGAAATCAATTTTTGAGGTTACGGTAGTTGTCGTGGGACCATCGGTCACAACCACCTGCGTTTCACTTGAATAACTGGAACTTTTTGTACCGGAACAATAGCCTTTGAAATTATTTAAAAGTTCAGATTATGGTAATTGAATATTTTTTATGCTTCGACAACTTCACAAAAACTATACAACACCGGTTTCCATAATAGGAAATTGTATGTAAGCGAAGATCAACATAAAAAAAATATAAGAATCAAATCAGAATTTAGTATTTTGACAATATCTTGTTCCAAACCTATTGATATTCGAGAAGAATCGTTTATTCAGACCAATTGAACAAATTTAAAAAAAACCAAAAAAATTATGAATAGAATCATTTCACCGGTATTTCGAATCGTCGACAAAGTGGACCTAAATCGTATTTACAGAAAAGAGAAAAAGAGAGATTTTACTGTGGTTTCAAAGTGGAAAAATTGATTGGTGGAGGGGGTTCTACAATTGAAGTTAGTGTTTCATTCAAACCCAAATGAGTCGAATTTGGAACTTCTCCATAGATGAAGGCAGGTCTCATATCGACAATCGTTGTCACTGCTCCAACAATCAAAACGATCAGAAGGCCAAGAAGAATTGCTGTGTAGATCGGAACACATGAGAATGGAGGACGCGGATG</canonical>
            <polymorphic>GACGAAGGGAAAGGGGAAGAGACGTTCAAAAGTTACGTCAGGCATCTATGAAAAAAAAACGATGATGGGAAAAAATCAGATAGATCAATCTGTGTCTAGAACATTTTTCTGTTTTAAAGTTTCGATGAATTCTGAAGAATTTTTTTAATAGTAAATGGGAGTTTCGTTTGGTAATAGTGACTAATCAGAAACCAGAGAAGTTCAGAATCTTGGTTTTTCCGGTCCCAAAGTTTCAGAATGTTTGAAAACTTTTGAACCTGAGGAAGCGGGATTCAAAGATTTTTAGAATTCAAAAAAATCTAAAAGGCCCCTCTAATACAAGTTTTACAGTAAGAAATCCAGGAAATCAATTTTTGAGGTTACGGTAGTTGTCGTGGGACCATCGGTCACAACCACCTGCGTTTCACTTGAATAACTGGAACTTTTTGTACCGGAACAATAGCCTTTGAAATTATTTAAAAGTTCAGATTATGGTAATTGAATATTTTTTATGCTTCGAMAACTTCACAAAAACTATACAACACCGGTTTCCATAATAGGAAATTGTATGTAAGCGAAGATCAACATAAAAAAAATATAAGAATCAAATCAGAATTTAGTATTTTGACAATATCTTGTTCCAAACCTATTGATATTCGAGAAGAATCGTTTATTCAGACCAATTGAACAAATTTAAAAAAAACCAAAAAAATTATGAATAGAATCATTTCACCGGTATTTCGAATCGTCGACAAAGTGGACCTAAATCGTATTTACAGAAAAGAGAAAAAGAGAGATTTTACTGTGGTTTCAAAGTGGAAAAATTGATTGGTGGAGGGGGTTCTACAATTGAAGTTAGTGTTTCATTCAAACCCAAATGAGTCGAATTTGGAACTTCTCCATAGATGAAGGCAGGTCTCATATCGACAATCGTTGTCACTGCTCCAACAATCAAAACGATCAGAAGGCCAAGAAGAATTGCTGTGTAGATCGGAACACATGAGAATGGAGGACGCGGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGCCCCTCTAATACAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>TCGCTTACATACAATTTCCTATT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AGGCCCCTCTAATACAAGTTTTACAGTAAGAAATCCAGGAAATCAATTTTTGAGGTTACGGTAGTTGTCGTGGGACCATCGGTCACAACCACCTGCGTTTCACTTGAATAACTGGAACTTTTTGTACCGGAACAATAGCCTTTGAAATTATTTAAAAGTTCAGATTATGGTAATTGAATATTTTTTATGCTTCGACAACTTCACAAAAACTATACAACACCGGTTTCCATAATAGGAAATTGTATGTAAGCGA</canonical_amplicon>
		<polymorphic_amplicon>AGGCCCCTCTAATACAAGTTTTACAGTAAGAAATCCAGGAAATCAATTTTTGAGGTTACGGTAGTTGTCGTGGGACCATCGGTCACAACCACCTGCGTTTCACTTGAATAACTGGAACTTTTTGTACCGGAACAATAGCCTTTGAAATTATTTAAAAGTTCAGATTATGGTAATTGAATATTTTTTATGCTTCGAMAACTTCACAAAAACTATACAACACCGGTTTCCATAATAGGAAATTGTATGTAAGCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1063</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>169254</contig_pos>
        <strand></strand>
        <context>TAMAAAAAAT[A/C]TAAGAATCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTTCCATAATAGGAAATTGTATGTAAGCGAAGATCAACATAAAAAAAAT</left_flank>
        <right_flank>TAAGAATCAAATCAGAATTTAGTATTTTGACAATATCTTGTTCCAAACCT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATAGATCAATCTGTGTCTAGAACATTTTTCTGTTTTAAAGTTTCGATGAATTCTGAAGAATTTTTTTAATAGTAAATGGGAGTTTCGTTTGGTAATAGTGACTAATCAGAAACCAGAGAAGTTCAGAATCTTGGTTTTTCCGGTCCCAAAGTTTCAGAATGTTTGAAAACTTTTGAACCTGAGGAAGCGGGATTCAAAGATTTTTAGAATTCAAAAAAATCTAAAAGGCCCCTCTAATACAAGTTTTACAGTAAGAAATCCAGGAAATCAATTTTTGAGGTTACGGTAGTTGTCGTGGGACCATCGGTCACAACCACCTGCGTTTCACTTGAATAACTGGAACTTTTTGTACCGGAACAATAGCCTTTGAAATTATTTAAAAGTTCAGATTATGGTAATTGAATATTTTTTATGCTTCGACAACTTCACAAAAACTATACAACACCGGTTTCCATAATAGGAAATTGTATGTAAGCGAAGATCAACATAAAAAAAATATAAGAATCAAATCAGAATTTAGTATTTTGACAATATCTTGTTCCAAACCTATTGATATTCGAGAAGAATCGTTTATTCAGACCAATTGAACAAATTTAAAAAAAACCAAAAAAATTATGAATAGAATCATTTCACCGGTATTTCGAATCGTCGACAAAGTGGACCTAAATCGTATTTACAGAAAAGAGAAAAAGAGAGATTTTACTGTGGTTTCAAAGTGGAAAAATTGATTGGTGGAGGGGGTTCTACAATTGAAGTTAGTGTTTCATTCAAACCCAAATGAGTCGAATTTGGAACTTCTCCATAGATGAAGGCAGGTCTCATATCGACAATCGTTGTCACTGCTCCAACAATCAAAACGATCAGAAGGCCAAGAAGAATTGCTGTGTAGATCGGAACACATGAGAATGGAGGACGCGGATGGAAGTCGGTTCGTTGAATCGCCTTCTTTTTTGGCTTTTTGATTGTCACTGCACATTCCAAATATGAAATATAAAAAT</canonical>
            <polymorphic>AGATAGATCAATCTGTGTCTAGAACATTTTTCTGTTTTAAAGTTTCGATGAATTCTGAAGAATTTTTTTAATAGTAAATGGGAGTTTCGTTTGGTAATAGTGACTAATCAGAAACCAGAGAAGTTCAGAATCTTGGTTTTTCCGGTCCCAAAGTTTCAGAATGTTTGAAAACTTTTGAACCTGAGGAAGCGGGATTCAAAGATTTTTAGAATTCAAAAAAATCTAAAAGGCCCCTCTAATACAAGTTTTACAGTAAGAAATCCAGGAAATCAATTTTTGAGGTTACGGTAGTTGTCGTGGGACCATCGGTCACAACCACCTGCGTTTCACTTGAATAACTGGAACTTTTTGTACCGGAACAATAGCCTTTGAAATTATTTAAAAGTTCAGATTATGGTAATTGAATATTTTTTATGCTTCGACAACTTCACAAAAACTATACAACACCGGTTTCCATAATAGGAAATTGTATGTAAGCGAAGATCAACATAAAAAAAATMTAAGAATCAAATCAGAATTTAGTATTTTGACAATATCTTGTTCCAAACCTATTGATATTCGAGAAGAATCGTTTATTCAGACCAATTGAACAAATTTAAAAAAAACCAAAAAAATTATGAATAGAATCATTTCACCGGTATTTCGAATCGTCGACAAAGTGGACCTAAATCGTATTTACAGAAAAGAGAAAAAGAGAGATTTTACTGTGGTTTCAAAGTGGAAAAATTGATTGGTGGAGGGGGTTCTACAATTGAAGTTAGTGTTTCATTCAAACCCAAATGAGTCGAATTTGGAACTTCTCCATAGATGAAGGCAGGTCTCATATCGACAATCGTTGTCACTGCTCCAACAATCAAAACGATCAGAAGGCCAAGAAGAATTGCTGTGTAGATCGGAACACATGAGAATGGAGGACGCGGATGGAAGTCGGTTCGTTGAATCGCCTTCTTTTTTGGCTTTTTGATTGTCACTGCACATTCCAAATATGAAATATAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTCACAAAAACTATACAACACC</pcr_primer_p1>
		<pcr_primer_p2>TACGATTTAGGTCCACTTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTCACAAAAACTATACAACACCGGTTTCCATAATAGGAAATTGTATGTAAGCGAAGATCAACATAAAAAAAATATAAGAATCAAATCAGAATTTAGTATTTTGACAATATCTTGTTCCAAACCTATTGATATTCGAGAAGAATCGTTTATTCAGACCAATTGAACAAATTTAAAAAAAACCAAAAAAATTATGAATAGAATCATTTCACCGGTATTTCGAATCGTCGACAAAGTGGACCTAAATCGTA</canonical_amplicon>
		<polymorphic_amplicon>ACTTCACAAAAACTATACAACACCGGTTTCCATAATAGGAAATTGTATGTAAGCGAAGATCAACATAAAAAAAATMTAAGAATCAAATCAGAATTTAGTATTTTGACAATATCTTGTTCCAAACCTATTGATATTCGAGAAGAATCGTTTATTCAGACCAATTGAACAAATTTAAAAAAAACCAAAAAAATTATGAATAGAATCATTTCACCGGTATTTCGAATCGTCGACAAAGTGGACCTAAATCGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1064</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>169351</contig_pos>
        <strand>+</strand>
        <context>TGAACAAATT[A/C]AAAAAAAACC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACCTATTGATATTCGAGAAGAATCGTTTATTCAGACCAATTGAACAAATT</left_flank>
        <right_flank>AAAAAAAACCAAAAAAATTATGAATAGAATCATTTCACCGGTATTTCGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGTGACTAATCAGAAACCAGAGAAGTTCAGAATCTTGGTTTTTCCGGTCCCAAAGTTTCAGAATGTTTGAAAACTTTTGAACCTGAGGAAGCGGGATTCAAAGATTTTTAGAATTCAAAAAAATCTAAAAGGCCCCTCTAATACAAGTTTTACAGTAAGAAATCCAGGAAATCAATTTTTGAGGTTACGGTAGTTGTCGTGGGACCATCGGTCACAACCACCTGCGTTTCACTTGAATAACTGGAACTTTTTGTACCGGAACAATAGCCTTTGAAATTATTTAAAAGTTCAGATTATGGTAATTGAATATTTTTTATGCTTCGACAACTTCACAAAAACTATACAACACCGGTTTCCATAATAGGAAATTGTATGTAAGCGAAGATCAACATAAAAAAAATATAAGAATCAAATCAGAATTTAGTATTTTGACAATATCTTGTTCCAAACCTATTGATATTCGAGAAGAATCGTTTATTCAGACCAATTGAACAAATTTAAAAAAAACCAAAAAAATTATGAATAGAATCATTTCACCGGTATTTCGAATCGTCGACAAAGTGGACCTAAATCGTATTTACAGAAAAGAGAAAAAGAGAGATTTTACTGTGGTTTCAAAGTGGAAAAATTGATTGGTGGAGGGGGTTCTACAATTGAAGTTAGTGTTTCATTCAAACCCAAATGAGTCGAATTTGGAACTTCTCCATAGATGAAGGCAGGTCTCATATCGACAATCGTTGTCACTGCTCCAACAATCAAAACGATCAGAAGGCCAAGAAGAATTGCTGTGTAGATCGGAACACATGAGAATGGAGGACGCGGATGGAAGTCGGTTCGTTGAATCGCCTTCTTTTTTGGCTTTTTGATTGTCACTGCACATTCCAAATATGAAATATAAAAATTATTGCGAGATGCACATTATTGAGAAAGCCATGAAAACATTTTTTAATATTTTAATTATGAAACGGTTAGGGTTGGAAAACTAGGACAAACAGGGGC</canonical>
            <polymorphic>TAGTGACTAATCAGAAACCAGAGAAGTTCAGAATCTTGGTTTTTCCGGTCCCAAAGTTTCAGAATGTTTGAAAACTTTTGAACCTGAGGAAGCGGGATTCAAAGATTTTTAGAATTCAAAAAAATCTAAAAGGCCCCTCTAATACAAGTTTTACAGTAAGAAATCCAGGAAATCAATTTTTGAGGTTACGGTAGTTGTCGTGGGACCATCGGTCACAACCACCTGCGTTTCACTTGAATAACTGGAACTTTTTGTACCGGAACAATAGCCTTTGAAATTATTTAAAAGTTCAGATTATGGTAATTGAATATTTTTTATGCTTCGACAACTTCACAAAAACTATACAACACCGGTTTCCATAATAGGAAATTGTATGTAAGCGAAGATCAACATAAAAAAAATATAAGAATCAAATCAGAATTTAGTATTTTGACAATATCTTGTTCCAAACCTATTGATATTCGAGAAGAATCGTTTATTCAGACCAATTGAACAAATTMAAAAAAAACCAAAAAAATTATGAATAGAATCATTTCACCGGTATTTCGAATCGTCGACAAAGTGGACCTAAATCGTATTTACAGAAAAGAGAAAAAGAGAGATTTTACTGTGGTTTCAAAGTGGAAAAATTGATTGGTGGAGGGGGTTCTACAATTGAAGTTAGTGTTTCATTCAAACCCAAATGAGTCGAATTTGGAACTTCTCCATAGATGAAGGCAGGTCTCATATCGACAATCGTTGTCACTGCTCCAACAATCAAAACGATCAGAAGGCCAAGAAGAATTGCTGTGTAGATCGGAACACATGAGAATGGAGGACGCGGATGGAAGTCGGTTCGTTGAATCGCCTTCTTTTTTGGCTTTTTGATTGTCACTGCACATTCCAAATATGAAATATAAAAATTATTGCGAGATGCACATTATTGAGAAAGCCATGAAAACATTTTTTAATATTTTAATTATGAAACGGTTAGGGTTGGAAAACTAGGACAAACAGGGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>310 306 195 112 77</canonical_bands>
                <polymorphic_bands>310 306 272 112</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 283 217</canonical_bands>
                <polymorphic_bands>717 283</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>448 282 217 45 8</canonical_bands>
                <polymorphic_bands>665 282 45 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACAATATCTTGTTCCAAACCTA</pcr_primer_p1>
		<pcr_primer_p2>GGTTTGAATGAAACACTAACTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GACAATATCTTGTTCCAAACCTATTGATATTCGAGAAGAATCGTTTATTCAGACCAATTGAACAAATTTAAAAAAAACCAAAAAAATTATGAATAGAATCATTTCACCGGTATTTCGAATCGTCGACAAAGTGGACCTAAATCGTATTTACAGAAAAGAGAAAAAGAGAGATTTTACTGTGGTTTCAAAGTGGAAAAATTGATTGGTGGAGGGGGTTCTACAATTGAAGTTAGTGTTTCATTCAAACC</canonical_amplicon>
		<polymorphic_amplicon>GACAATATCTTGTTCCAAACCTATTGATATTCGAGAAGAATCGTTTATTCAGACCAATTGAACAAATTMAAAAAAAACCAAAAAAATTATGAATAGAATCATTTCACCGGTATTTCGAATCGTCGACAAAGTGGACCTAAATCGTATTTACAGAAAAGAGAAAAAGAGAGATTTTACTGTGGTTTCAAAGTGGAAAAATTGATTGGTGGAGGGGGTTCTACAATTGAAGTTAGTGTTTCATTCAAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1065</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>169365</contig_pos>
        <strand></strand>
        <context>AAAAACCAAA[A/C]AAATTATGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAGAAGAATCGTTTATTCAGACCAATTGAACAAATTTAAAAAAAACCAAA</left_flank>
        <right_flank>AAATTATGAATAGAATCATTTCACCGGTATTTCGAATCGTCGACAAAGTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACCAGAGAAGTTCAGAATCTTGGTTTTTCCGGTCCCAAAGTTTCAGAATGTTTGAAAACTTTTGAACCTGAGGAAGCGGGATTCAAAGATTTTTAGAATTCAAAAAAATCTAAAAGGCCCCTCTAATACAAGTTTTACAGTAAGAAATCCAGGAAATCAATTTTTGAGGTTACGGTAGTTGTCGTGGGACCATCGGTCACAACCACCTGCGTTTCACTTGAATAACTGGAACTTTTTGTACCGGAACAATAGCCTTTGAAATTATTTAAAAGTTCAGATTATGGTAATTGAATATTTTTTATGCTTCGACAACTTCACAAAAACTATACAACACCGGTTTCCATAATAGGAAATTGTATGTAAGCGAAGATCAACATAAAAAAAATATAAGAATCAAATCAGAATTTAGTATTTTGACAATATCTTGTTCCAAACCTATTGATATTCGAGAAGAATCGTTTATTCAGACCAATTGAACAAATTTAAAAAAAACCAAAAAAATTATGAATAGAATCATTTCACCGGTATTTCGAATCGTCGACAAAGTGGACCTAAATCGTATTTACAGAAAAGAGAAAAAGAGAGATTTTACTGTGGTTTCAAAGTGGAAAAATTGATTGGTGGAGGGGGTTCTACAATTGAAGTTAGTGTTTCATTCAAACCCAAATGAGTCGAATTTGGAACTTCTCCATAGATGAAGGCAGGTCTCATATCGACAATCGTTGTCACTGCTCCAACAATCAAAACGATCAGAAGGCCAAGAAGAATTGCTGTGTAGATCGGAACACATGAGAATGGAGGACGCGGATGGAAGTCGGTTCGTTGAATCGCCTTCTTTTTTGGCTTTTTGATTGTCACTGCACATTCCAAATATGAAATATAAAAATTATTGCGAGATGCACATTATTGAGAAAGCCATGAAAACATTTTTTAATATTTTAATTATGAAACGGTTAGGGTTGGAAAACTAGGACAAACAGGGGCTCTTTGACATCCAC</canonical>
            <polymorphic>AAACCAGAGAAGTTCAGAATCTTGGTTTTTCCGGTCCCAAAGTTTCAGAATGTTTGAAAACTTTTGAACCTGAGGAAGCGGGATTCAAAGATTTTTAGAATTCAAAAAAATCTAAAAGGCCCCTCTAATACAAGTTTTACAGTAAGAAATCCAGGAAATCAATTTTTGAGGTTACGGTAGTTGTCGTGGGACCATCGGTCACAACCACCTGCGTTTCACTTGAATAACTGGAACTTTTTGTACCGGAACAATAGCCTTTGAAATTATTTAAAAGTTCAGATTATGGTAATTGAATATTTTTTATGCTTCGACAACTTCACAAAAACTATACAACACCGGTTTCCATAATAGGAAATTGTATGTAAGCGAAGATCAACATAAAAAAAATATAAGAATCAAATCAGAATTTAGTATTTTGACAATATCTTGTTCCAAACCTATTGATATTCGAGAAGAATCGTTTATTCAGACCAATTGAACAAATTTAAAAAAAACCAAAMAAATTATGAATAGAATCATTTCACCGGTATTTCGAATCGTCGACAAAGTGGACCTAAATCGTATTTACAGAAAAGAGAAAAAGAGAGATTTTACTGTGGTTTCAAAGTGGAAAAATTGATTGGTGGAGGGGGTTCTACAATTGAAGTTAGTGTTTCATTCAAACCCAAATGAGTCGAATTTGGAACTTCTCCATAGATGAAGGCAGGTCTCATATCGACAATCGTTGTCACTGCTCCAACAATCAAAACGATCAGAAGGCCAAGAAGAATTGCTGTGTAGATCGGAACACATGAGAATGGAGGACGCGGATGGAAGTCGGTTCGTTGAATCGCCTTCTTTTTTGGCTTTTTGATTGTCACTGCACATTCCAAATATGAAATATAAAAATTATTGCGAGATGCACATTATTGAGAAAGCCATGAAAACATTTTTTAATATTTTAATTATGAAACGGTTAGGGTTGGAAAACTAGGACAAACAGGGGCTCTTTGACATCCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAATATCTTGTTCCAAACCTA</pcr_primer_p1>
		<pcr_primer_p2>GGTTTGAATGAAACACTAACTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GACAATATCTTGTTCCAAACCTATTGATATTCGAGAAGAATCGTTTATTCAGACCAATTGAACAAATTTAAAAAAAACCAAAAAAATTATGAATAGAATCATTTCACCGGTATTTCGAATCGTCGACAAAGTGGACCTAAATCGTATTTACAGAAAAGAGAAAAAGAGAGATTTTACTGTGGTTTCAAAGTGGAAAAATTGATTGGTGGAGGGGGTTCTACAATTGAAGTTAGTGTTTCATTCAAACC</canonical_amplicon>
		<polymorphic_amplicon>GACAATATCTTGTTCCAAACCTATTGATATTCGAGAAGAATCGTTTATTCAGACCAATTGAACAAATTTAAAAAAAACCAAAMAAATTATGAATAGAATCATTTCACCGGTATTTCGAATCGTCGACAAAGTGGACCTAAATCGTATTTACAGAAAAGAGAAAAAGAGAGATTTTACTGTGGTTTCAAAGTGGAAAAATTGATTGGTGGAGGGGGTTCTACAATTGAAGTTAGTGTTTCATTCAAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1066</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>169452</contig_pos>
        <strand>+</strand>
        <context>GAAAAAGAGA[G/T]ATTTTACTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGTCGACAAAGTGGACCTAAATCGTATTTACAGAAAAGAGAAAAAGAGA</left_flank>
        <right_flank>ATTTTACTGTGGTTTCAAAGTGGAAAAATTGATTGGTGGAGGGGGTTCTA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGATTTTTAGAATTCAAAAAAATCTAAAAGGCCCCTCTAATACAAGTTTTACAGTAAGAAATCCAGGAAATCAATTTTTGAGGTTACGGTAGTTGTCGTGGGACCATCGGTCACAACCACCTGCGTTTCACTTGAATAACTGGAACTTTTTGTACCGGAACAATAGCCTTTGAAATTATTTAAAAGTTCAGATTATGGTAATTGAATATTTTTTATGCTTCGACAACTTCACAAAAACTATACAACACCGGTTTCCATAATAGGAAATTGTATGTAAGCGAAGATCAACATAAAAAAAATATAAGAATCAAATCAGAATTTAGTATTTTGACAATATCTTGTTCCAAACCTATTGATATTCGAGAAGAATCGTTTATTCAGACCAATTGAACAAATTTAAAAAAAACCAAAAAAATTATGAATAGAATCATTTCACCGGTATTTCGAATCGTCGACAAAGTGGACCTAAATCGTATTTACAGAAAAGAGAAAAAGAGAGATTTTACTGTGGTTTCAAAGTGGAAAAATTGATTGGTGGAGGGGGTTCTACAATTGAAGTTAGTGTTTCATTCAAACCCAAATGAGTCGAATTTGGAACTTCTCCATAGATGAAGGCAGGTCTCATATCGACAATCGTTGTCACTGCTCCAACAATCAAAACGATCAGAAGGCCAAGAAGAATTGCTGTGTAGATCGGAACACATGAGAATGGAGGACGCGGATGGAAGTCGGTTCGTTGAATCGCCTTCTTTTTTGGCTTTTTGATTGTCACTGCACATTCCAAATATGAAATATAAAAATTATTGCGAGATGCACATTATTGAGAAAGCCATGAAAACATTTTTTAATATTTTAATTATGAAACGGTTAGGGTTGGAAAACTAGGACAAACAGGGGCTCTTTGACATCCACTTTCAGTATCTCAAACAGTTTCGCCTCGTATTACACTTTGAAATAAAAATATTTTAAATGTTGGTTGTGAAACAGTACAGAAATTCC</canonical>
            <polymorphic>AAGATTTTTAGAATTCAAAAAAATCTAAAAGGCCCCTCTAATACAAGTTTTACAGTAAGAAATCCAGGAAATCAATTTTTGAGGTTACGGTAGTTGTCGTGGGACCATCGGTCACAACCACCTGCGTTTCACTTGAATAACTGGAACTTTTTGTACCGGAACAATAGCCTTTGAAATTATTTAAAAGTTCAGATTATGGTAATTGAATATTTTTTATGCTTCGACAACTTCACAAAAACTATACAACACCGGTTTCCATAATAGGAAATTGTATGTAAGCGAAGATCAACATAAAAAAAATATAAGAATCAAATCAGAATTTAGTATTTTGACAATATCTTGTTCCAAACCTATTGATATTCGAGAAGAATCGTTTATTCAGACCAATTGAACAAATTTAAAAAAAACCAAAAAAATTATGAATAGAATCATTTCACCGGTATTTCGAATCGTCGACAAAGTGGACCTAAATCGTATTTACAGAAAAGAGAAAAAGAGAKATTTTACTGTGGTTTCAAAGTGGAAAAATTGATTGGTGGAGGGGGTTCTACAATTGAAGTTAGTGTTTCATTCAAACCCAAATGAGTCGAATTTGGAACTTCTCCATAGATGAAGGCAGGTCTCATATCGACAATCGTTGTCACTGCTCCAACAATCAAAACGATCAGAAGGCCAAGAAGAATTGCTGTGTAGATCGGAACACATGAGAATGGAGGACGCGGATGGAAGTCGGTTCGTTGAATCGCCTTCTTTTTTGGCTTTTTGATTGTCACTGCACATTCCAAATATGAAATATAAAAATTATTGCGAGATGCACATTATTGAGAAAGCCATGAAAACATTTTTTAATATTTTAATTATGAAACGGTTAGGGTTGGAAAACTAGGACAAACAGGGGCTCTTTGACATCCACTTTCAGTATCTCAAACAGTTTCGCCTCGTATTACACTTTGAAATAAAAATATTTTAAATGTTGGTTGTGAAACAGTACAGAAATTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAATATCTTGTTCCAAACCTA</pcr_primer_p1>
		<pcr_primer_p2>GGTTTGAATGAAACACTAACTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GACAATATCTTGTTCCAAACCTATTGATATTCGAGAAGAATCGTTTATTCAGACCAATTGAACAAATTTAAAAAAAACCAAAAAAATTATGAATAGAATCATTTCACCGGTATTTCGAATCGTCGACAAAGTGGACCTAAATCGTATTTACAGAAAAGAGAAAAAGAGAGATTTTACTGTGGTTTCAAAGTGGAAAAATTGATTGGTGGAGGGGGTTCTACAATTGAAGTTAGTGTTTCATTCAAACC</canonical_amplicon>
		<polymorphic_amplicon>GACAATATCTTGTTCCAAACCTATTGATATTCGAGAAGAATCGTTTATTCAGACCAATTGAACAAATTTAAAAAAAACCAAAAAAATTATGAATAGAATCATTTCACCGGTATTTCGAATCGTCGACAAAGTGGACCTAAATCGTATTTACAGAAAAGAGAAAAAGAGAKATTTTACTGTGGTTTCAAAGTGGAAAAATTGATTGGTGGAGGGGGTTCTACAATTGAAGTTAGTGTTTCATTCAAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1067</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>169547</contig_pos>
        <strand>+</strand>
        <context>AGTCGAATTT[C/G]GAACTTCTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTTCTACAATTGAAGTTAGTGTTTCATTCAAACCCAAATGAGTCGAATTT</left_flank>
        <right_flank>GAACTTCTCCATAGATGAAGGCAGGTCTCATATCGACAATCGTTGTCACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCGTGGGACCATCGGTCACAACCACCTGCGTTTCACTTGAATAACTGGAACTTTTTGTACCGGAACAATAGCCTTTGAAATTATTTAAAAGTTCAGATTATGGTAATTGAATATTTTTTATGCTTCGACAACTTCACAAAAACTATACAACACCGGTTTCCATAATAGGAAATTGTATGTAAGCGAAGATCAACATAAAAAAAATATAAGAATCAAATCAGAATTTAGTATTTTGACAATATCTTGTTCCAAACCTATTGATATTCGAGAAGAATCGTTTATTCAGACCAATTGAACAAATTTAAAAAAAACCAAAAAAATTATGAATAGAATCATTTCACCGGTATTTCGAATCGTCGACAAAGTGGACCTAAATCGTATTTACAGAAAAGAGAAAAAGAGAGATTTTACTGTGGTTTCAAAGTGGAAAAATTGATTGGTGGAGGGGGTTCTACAATTGAAGTTAGTGTTTCATTCAAACCCAAATGAGTCGAATTTGGAACTTCTCCATAGATGAAGGCAGGTCTCATATCGACAATCGTTGTCACTGCTCCAACAATCAAAACGATCAGAAGGCCAAGAAGAATTGCTGTGTAGATCGGAACACATGAGAATGGAGGACGCGGATGGAAGTCGGTTCGTTGAATCGCCTTCTTTTTTGGCTTTTTGATTGTCACTGCACATTCCAAATATGAAATATAAAAATTATTGCGAGATGCACATTATTGAGAAAGCCATGAAAACATTTTTTAATATTTTAATTATGAAACGGTTAGGGTTGGAAAACTAGGACAAACAGGGGCTCTTTGACATCCACTTTCAGTATCTCAAACAGTTTCGCCTCGTATTACACTTTGAAATAAAAATATTTTAAATGTTGGTTGTGAAACAGTACAGAAATTCCCAATCGCCAAAAATTATCAAAATACACCTTACTTTGAGCTCAATTATCTCGGTTTCGATTTGAGATGTCAAAAATTTGCAAACTATACAACGTTG</canonical>
            <polymorphic>GTCGTGGGACCATCGGTCACAACCACCTGCGTTTCACTTGAATAACTGGAACTTTTTGTACCGGAACAATAGCCTTTGAAATTATTTAAAAGTTCAGATTATGGTAATTGAATATTTTTTATGCTTCGACAACTTCACAAAAACTATACAACACCGGTTTCCATAATAGGAAATTGTATGTAAGCGAAGATCAACATAAAAAAAATATAAGAATCAAATCAGAATTTAGTATTTTGACAATATCTTGTTCCAAACCTATTGATATTCGAGAAGAATCGTTTATTCAGACCAATTGAACAAATTTAAAAAAAACCAAAAAAATTATGAATAGAATCATTTCACCGGTATTTCGAATCGTCGACAAAGTGGACCTAAATCGTATTTACAGAAAAGAGAAAAAGAGAGATTTTACTGTGGTTTCAAAGTGGAAAAATTGATTGGTGGAGGGGGTTCTACAATTGAAGTTAGTGTTTCATTCAAACCCAAATGAGTCGAATTTSGAACTTCTCCATAGATGAAGGCAGGTCTCATATCGACAATCGTTGTCACTGCTCCAACAATCAAAACGATCAGAAGGCCAAGAAGAATTGCTGTGTAGATCGGAACACATGAGAATGGAGGACGCGGATGGAAGTCGGTTCGTTGAATCGCCTTCTTTTTTGGCTTTTTGATTGTCACTGCACATTCCAAATATGAAATATAAAAATTATTGCGAGATGCACATTATTGAGAAAGCCATGAAAACATTTTTTAATATTTTAATTATGAAACGGTTAGGGTTGGAAAACTAGGACAAACAGGGGCTCTTTGACATCCACTTTCAGTATCTCAAACAGTTTCGCCTCGTATTACACTTTGAAATAAAAATATTTTAAATGTTGGTTGTGAAACAGTACAGAAATTCCCAATCGCCAAAAATTATCAAAATACACCTTACTTTGAGCTCAATTATCTCGGTTTCGATTTGAGATGTCAAAAATTTGCAAACTATACAACGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGACCTAAATCGTATTTACAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATTCTCATGTGTTCCGATCTAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGACCTAAATCGTATTTACAGAAAAGAGAAAAAGAGAGATTTTACTGTGGTTTCAAAGTGGAAAAATTGATTGGTGGAGGGGGTTCTACAATTGAAGTTAGTGTTTCATTCAAACCCAAATGAGTCGAATTTGGAACTTCTCCATAGATGAAGGCAGGTCTCATATCGACAATCGTTGTCACTGCTCCAACAATCAAAACGATCAGAAGGCCAAGAAGAATTGCTGTGTAGATCGGAACACATGAGAAT</canonical_amplicon>
		<polymorphic_amplicon>GGACCTAAATCGTATTTACAGAAAAGAGAAAAAGAGAGATTTTACTGTGGTTTCAAAGTGGAAAAATTGATTGGTGGAGGGGGTTCTACAATTGAAGTTAGTGTTTCATTCAAACCCAAATGAGTCGAATTTSGAACTTCTCCATAGATGAAGGCAGGTCTCATATCGACAATCGTTGTCACTGCTCCAACAATCAAAACGATCAGAAGGCCAAGAAGAATTGCTGTGTAGATCGGAACACATGAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1068</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>174869</contig_pos>
        <strand>+</strand>
        <context>TAGTCAGTCT[C/T]CTGAAACCGt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCT</left_flank>
        <right_flank>CTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTGAAATGGAAGCTTTCAAAAAACTGAAACACTAGAATCTCGTCTTGGAAAAGCAAAACCATGAATGTCCCTGCCAAACCAAGCAACTTTTCGTAATATTTCTCCAACAGAACACCAATCAGAAATAGTCGAAAAATAAAGTTACTTATTTGGCACGGAAAATCCGACGAAAATTGCCATTACTTTAAAATGTCTCTAGAAAAATGTCGGAAATGAAAAACATAGTTTTCAATTTTGGCGGGAATTGAAAAAAAAATTAAGAACCTTCTAGAAGCTTCATAAAATGGACGATGCCTGAGATTTTTTCTCTTTTTGAATTGATTTTTCAAAGTTTTACATCTCTAAAGAAAATTTGCATTGAATCTATGTGAATCTACATTATTTACACACACTTTGATACAGTAAAAATTCTTGGTTGGCGTTCCTTACTAAGAAA</canonical>
            <polymorphic>ACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTYCTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTGAAATGGAAGCTTTCAAAAAACTGAAACACTAGAATCTCGTCTTGGAAAAGCAAAACCATGAATGTCCCTGCCAAACCAAGCAACTTTTCGTAATATTTCTCCAACAGAACACCAATCAGAAATAGTCGAAAAATAAAGTTACTTATTTGGCACGGAAAATCCGACGAAAATTGCCATTACTTTAAAATGTCTCTAGAAAAATGTCGGAAATGAAAAACATAGTTTTCAATTTTGGCGGGAATTGAAAAAAAAATTAAGAACCTTCTAGAAGCTTCATAAAATGGACGATGCCTGAGATTTTTTCTCTTTTTGAATTGATTTTTCAAAGTTTTACATCTCTAAAGAAAATTTGCATTGAATCTATGTGAATCTACATTATTTACACACACTTTGATACAGTAAAAATTCTTGGTTGGCGTTCCTTACTAAGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>294 260 168 134 72 72</canonical_bands>
                <polymorphic_bands>554 168 134 72 72</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTCCCTTTTTAAGAAATTGGTA</pcr_primer_p1>
		<pcr_primer_p2>GACGAGATTCTAGTGTTTCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTGAAATGGAAGCTTTCAAAAAACTGAAACACTAGAATCTCGTC</canonical_amplicon>
		<polymorphic_amplicon>AGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTYCTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTGAAATGGAAGCTTTCAAAAAACTGAAACACTAGAATCTCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1069</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>174822</contig_pos>
        <strand>+</strand>
        <context>CGTCTTCAAG[C/T]AGTGCACTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAG</left_flank>
        <right_flank>AGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAATTGGAGTCTGGATGGTTCTGGAAAACAGACTATTTCTCCAGATACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTGAAATGGAAGCTTTCAAAAAACTGAAACACTAGAATCTCGTCTTGGAAAAGCAAAACCATGAATGTCCCTGCCAAACCAAGCAACTTTTCGTAATATTTCTCCAACAGAACACCAATCAGAAATAGTCGAAAAATAAAGTTACTTATTTGGCACGGAAAATCCGACGAAAATTGCCATTACTTTAAAATGTCTCTAGAAAAATGTCGGAAATGAAAAACATAGTTTTCAATTTTGGCGGGAATTGAAAAAAAAATTAAGAACCTTCTAGAAGCTTCATAAAATGGACGATGCCTGAGATTTTTTCTCTTTTTGAATTGATTTTTCAAAGTTTTACATCTCTAAAGAAAATTTGCATTGAATCTATGTGAATCTACATTATTTACACA</canonical>
            <polymorphic>GGAATTGGAGTCTGGATGGTTCTGGAAAACAGACTATTTCTCCAGATACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGYAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTGAAATGGAAGCTTTCAAAAAACTGAAACACTAGAATCTCGTCTTGGAAAAGCAAAACCATGAATGTCCCTGCCAAACCAAGCAACTTTTCGTAATATTTCTCCAACAGAACACCAATCAGAAATAGTCGAAAAATAAAGTTACTTATTTGGCACGGAAAATCCGACGAAAATTGCCATTACTTTAAAATGTCTCTAGAAAAATGTCGGAAATGAAAAACATAGTTTTCAATTTTGGCGGGAATTGAAAAAAAAATTAAGAACCTTCTAGAAGCTTCATAAAATGGACGATGCCTGAGATTTTTTCTCTTTTTGAATTGATTTTTCAAAGTTTTACATCTCTAAAGAAAATTTGCATTGAATCTATGTGAATCTACATTATTTACACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCCCTTTTTAAGAAATTGGTA</pcr_primer_p1>
		<pcr_primer_p2>GACGAGATTCTAGTGTTTCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTGAAATGGAAGCTTTCAAAAAACTGAAACACTAGAATCTCGTC</canonical_amplicon>
		<polymorphic_amplicon>AGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGYAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTGAAATGGAAGCTTTCAAAAAACTGAAACACTAGAATCTCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1070</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>174692</contig_pos>
        <strand>+</strand>
        <context>RAATCTAGGT[A/C]TTTTTATACA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGT</left_flank>
        <right_flank>TTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATGACGTTACCAAATCAGTAACAAAAAAGTAACGATACAAGTTCAGAATTTGGTCAAAAAATGAGGAAGAAGAACGATTCGAGACTAATACATAATTTGGAGTAGAGACTACTAGAAGAAAATCAAAGGGAATTGGAGTCTGGATGGTTCTGGAAAACAGACTATTTCTCCAGATACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTGAAATGGAAGCTTTCAAAAAACTGAAACACTAGAATCTCGTCTTGGAAAAGCAAAACCATGAATGTCCCTGCCAAACCAAGCAACTTTTCGTAATATTTCTCCAACAGAACACCAATCAGAAATAGTCGAAAAATAAAGTTACTTATTTGGCACGGAAAATCCGACGAAAATTGCCATTACTTTAAAATGTCTCTAGAAAAATGTCGGAAATGAAAAACATAGTTTTCAATTTTGGCGGGAATTGAAAAAAAAATTA</canonical>
            <polymorphic>ACATGACGTTACCAAATCAGTAACAAAAAAGTAACGATACAAGTTCAGAATTTGGTCAAAAAATGAGGAAGAAGAACGATTCGAGACTAATACATAATTTGGAGTAGAGACTACTAGAAGAAAATCAAAGGGAATTGGAGTCTGGATGGTTCTGGAAAACAGACTATTTCTCCAGATACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTMTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTGAAATGGAAGCTTTCAAAAAACTGAAACACTAGAATCTCGTCTTGGAAAAGCAAAACCATGAATGTCCCTGCCAAACCAAGCAACTTTTCGTAATATTTCTCCAACAGAACACCAATCAGAAATAGTCGAAAAATAAAGTTACTTATTTGGCACGGAAAATCCGACGAAAATTGCCATTACTTTAAAATGTCTCTAGAAAAATGTCGGAAATGAAAAACATAGTTTTCAATTTTGGCGGGAATTGAAAAAAAAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGAAAGTTTTCTTGTATGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCTTAAAAAGGGACTACATCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>299</pcr_amplicon_size>
		<canonical_amplicon>TCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAA</canonical_amplicon>
		<polymorphic_amplicon>TCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTMTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1071</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>174682</contig_pos>
        <strand>+</strand>
        <context>CATGTTATGT[A/G]AATCTAGGTM</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGT</left_flank>
        <right_flank>AATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCACTTGTTACATGACGTTACCAAATCAGTAACAAAAAAGTAACGATACAAGTTCAGAATTTGGTCAAAAAATGAGGAAGAAGAACGATTCGAGACTAATACATAATTTGGAGTAGAGACTACTAGAAGAAAATCAAAGGGAATTGGAGTCTGGATGGTTCTGGAAAACAGACTATTTCTCCAGATACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTGAAATGGAAGCTTTCAAAAAACTGAAACACTAGAATCTCGTCTTGGAAAAGCAAAACCATGAATGTCCCTGCCAAACCAAGCAACTTTTCGTAATATTTCTCCAACAGAACACCAATCAGAAATAGTCGAAAAATAAAGTTACTTATTTGGCACGGAAAATCCGACGAAAATTGCCATTACTTTAAAATGTCTCTAGAAAAATGTCGGAAATGAAAAACATAGTTTTCAATTTTGGCGGGAATTGAA</canonical>
            <polymorphic>TTCACTTGTTACATGACGTTACCAAATCAGTAACAAAAAAGTAACGATACAAGTTCAGAATTTGGTCAAAAAATGAGGAAGAAGAACGATTCGAGACTAATACATAATTTGGAGTAGAGACTACTAGAAGAAAATCAAAGGGAATTGGAGTCTGGATGGTTCTGGAAAACAGACTATTTCTCCAGATACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTRAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTGAAATGGAAGCTTTCAAAAAACTGAAACACTAGAATCTCGTCTTGGAAAAGCAAAACCATGAATGTCCCTGCCAAACCAAGCAACTTTTCGTAATATTTCTCCAACAGAACACCAATCAGAAATAGTCGAAAAATAAAGTTACTTATTTGGCACGGAAAATCCGACGAAAATTGCCATTACTTTAAAATGTCTCTAGAAAAATGTCGGAAATGAAAAACATAGTTTTCAATTTTGGCGGGAATTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>228 199 136 122 94 83 52 41 20 15 4 2 2 2</canonical_bands>
                <polymorphic_bands>228 199 136 122 94 83 72 41 15 4 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>214 175 168 111 108 88 76 60</canonical_bands>
                <polymorphic_bands>214 187 175 168 108 88 60</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>214 175 168 168 111 88 76</canonical_bands>
                <polymorphic_bands>214 187 175 168 168 88</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAGAAAGTTTTCTTGTATGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCTTAAAAAGGGACTACATCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>299</pcr_amplicon_size>
		<canonical_amplicon>TCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAA</canonical_amplicon>
		<polymorphic_amplicon>TCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTRAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1072</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>174640</contig_pos>
        <strand>+</strand>
        <context>GATTTTCCAA[A/G]ATTTTGCGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAA</left_flank>
        <right_flank>ATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTATTTTTTTCCCATGAAACAAGTCAAGTGAACAACAGAATTCACTTGTTACATGACGTTACCAAATCAGTAACAAAAAAGTAACGATACAAGTTCAGAATTTGGTCAAAAAATGAGGAAGAAGAACGATTCGAGACTAATACATAATTTGGAGTAGAGACTACTAGAAGAAAATCAAAGGGAATTGGAGTCTGGATGGTTCTGGAAAACAGACTATTTCTCCAGATACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTGAAATGGAAGCTTTCAAAAAACTGAAACACTAGAATCTCGTCTTGGAAAAGCAAAACCATGAATGTCCCTGCCAAACCAAGCAACTTTTCGTAATATTTCTCCAACAGAACACCAATCAGAAATAGTCGAAAAATAAAGTTACTTATTTGGCACGGAAAATCCGACGAAAATTGCCATTACTTTAAAATGTCTCTAGAAAAATGT</canonical>
            <polymorphic>TTCTATTTTTTTCCCATGAAACAAGTCAAGTGAACAACAGAATTCACTTGTTACATGACGTTACCAAATCAGTAACAAAAAAGTAACGATACAAGTTCAGAATTTGGTCAAAAAATGAGGAAGAAGAACGATTCGAGACTAATACATAATTTGGAGTAGAGACTACTAGAAGAAAATCAAAGGGAATTGGAGTCTGGATGGTTCTGGAAAACAGACTATTTCTCCAGATACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAARATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTGAAATGGAAGCTTTCAAAAAACTGAAACACTAGAATCTCGTCTTGGAAAAGCAAAACCATGAATGTCCCTGCCAAACCAAGCAACTTTTCGTAATATTTCTCCAACAGAACACCAATCAGAAATAGTCGAAAAATAAAGTTACTTATTTGGCACGGAAAATCCGACGAAAATTGCCATTACTTTAAAATGTCTCTAGAAAAATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>337 132 115 92 82 82 60 41 40 19</canonical_bands>
                <polymorphic_bands>337 174 132 115 82 60 41 40 19</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>253 92 82 60 59 56 48 48 47 40 37 36 30 30 26 26 19 11</canonical_bands>
                <polymorphic_bands>253 174 60 59 56 48 48 47 40 37 36 30 30 26 26 19 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAGAAAGTTTTCTTGTATGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTACTGCTTCAAAGTGTGTA</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>TCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAARATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1073</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>174629</contig_pos>
        <strand>+</strand>
        <context>TTTGAAGAAG[C/T]GATTTTCCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAG</left_flank>
        <right_flank>GATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAGTTACTTTTCTATTTTTTTCCCATGAAACAAGTCAAGTGAACAACAGAATTCACTTGTTACATGACGTTACCAAATCAGTAACAAAAAAGTAACGATACAAGTTCAGAATTTGGTCAAAAAATGAGGAAGAAGAACGATTCGAGACTAATACATAATTTGGAGTAGAGACTACTAGAAGAAAATCAAAGGGAATTGGAGTCTGGATGGTTCTGGAAAACAGACTATTTCTCCAGATACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTGAAATGGAAGCTTTCAAAAAACTGAAACACTAGAATCTCGTCTTGGAAAAGCAAAACCATGAATGTCCCTGCCAAACCAAGCAACTTTTCGTAATATTTCTCCAACAGAACACCAATCAGAAATAGTCGAAAAATAAAGTTACTTATTTGGCACGGAAAATCCGACGAAAATTGCCATTACTTTAAAATGTCTC</canonical>
            <polymorphic>AGAAGTTACTTTTCTATTTTTTTCCCATGAAACAAGTCAAGTGAACAACAGAATTCACTTGTTACATGACGTTACCAAATCAGTAACAAAAAAGTAACGATACAAGTTCAGAATTTGGTCAAAAAATGAGGAAGAAGAACGATTCGAGACTAATACATAATTTGGAGTAGAGACTACTAGAAGAAAATCAAAGGGAATTGGAGTCTGGATGGTTCTGGAAAACAGACTATTTCTCCAGATACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGYGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTGAAATGGAAGCTTTCAAAAAACTGAAACACTAGAATCTCGTCTTGGAAAAGCAAAACCATGAATGTCCCTGCCAAACCAAGCAACTTTTCGTAATATTTCTCCAACAGAACACCAATCAGAAATAGTCGAAAAATAAAGTTACTTATTTGGCACGGAAAATCCGACGAAAATTGCCATTACTTTAAAATGTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>228 199 136 122 83 52 43 41 41 20 15 14 2 2 2</canonical_bands>
                <polymorphic_bands>228 199 136 122 83 67 43 41 41 20 14 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAGAAAGTTTTCTTGTATGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTACTGCTTCAAAGTGTGTA</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>TCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGYGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1074</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>174543</contig_pos>
        <strand></strand>
        <context>ttcagttttg[A/G]cgaaaattca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTG</left_flank>
        <right_flank>CGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAATAACGGAGTAGCTAAAATTCTCCTAACTCAAGAAAGAAATTAGAAACAGGAAAAAAATTTGAAAAATTTTTTCCCATAGTGAGAAGTTACTTTTCTATTTTTTTCCCATGAAACAAGTCAAGTGAACAACAGAATTCACTTGTTACATGACGTTACCAAATCAGTAACAAAAAAGTAACGATACAAGTTCAGAATTTGGTCAAAAAATGAGGAAGAAGAACGATTCGAGACTAATACATAATTTGGAGTAGAGACTACTAGAAGAAAATCAAAGGGAATTGGAGTCTGGATGGTTCTGGAAAACAGACTATTTCTCCAGATACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTGAAATGGAAGCTTTCAAAAAACTGAAACACTAGAATCTCGTCTTGGAAAAGCAAAACCATGAATGTCCCTGCCAAACCAAGCAACTTTTCGTAATATTTCTCCAACAG</canonical>
            <polymorphic>GAAAATAACGGAGTAGCTAAAATTCTCCTAACTCAAGAAAGAAATTAGAAACAGGAAAAAAATTTGAAAAATTTTTTCCCATAGTGAGAAGTTACTTTTCTATTTTTTTCCCATGAAACAAGTCAAGTGAACAACAGAATTCACTTGTTACATGACGTTACCAAATCAGTAACAAAAAAGTAACGATACAAGTTCAGAATTTGGTCAAAAAATGAGGAAGAAGAACGATTCGAGACTAATACATAATTTGGAGTAGAGACTACTAGAAGAAAATCAAAGGGAATTGGAGTCTGGATGGTTCTGGAAAACAGACTATTTCTCCAGATACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGRCGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTGAAATGGAAGCTTTCAAAAAACTGAAACACTAGAATCTCGTCTTGGAAAAGCAAAACCATGAATGTCCCTGCCAAACCAAGCAACTTTTCGTAATATTTCTCCAACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGGATTTTGAAAGACAATTT</pcr_primer_p1>
		<pcr_primer_p2>CTTCTTCAAAAAGTGAATGAATC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGRCGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1075</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>174524</contig_pos>
        <strand>+</strand>
        <context>TTRGAATTGA[C/G]ATggaatttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGA</left_flank>
        <right_flank>ATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTTTATCGCTATTACAGAAAATAACGGAGTAGCTAAAATTCTCCTAACTCAAGAAAGAAATTAGAAACAGGAAAAAAATTTGAAAAATTTTTTCCCATAGTGAGAAGTTACTTTTCTATTTTTTTCCCATGAAACAAGTCAAGTGAACAACAGAATTCACTTGTTACATGACGTTACCAAATCAGTAACAAAAAAGTAACGATACAAGTTCAGAATTTGGTCAAAAAATGAGGAAGAAGAACGATTCGAGACTAATACATAATTTGGAGTAGAGACTACTAGAAGAAAATCAAAGGGAATTGGAGTCTGGATGGTTCTGGAAAACAGACTATTTCTCCAGATACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTGAAATGGAAGCTTTCAAAAAACTGAAACACTAGAATCTCGTCTTGGAAAAGCAAAACCATGAATGTCCCTGCCAAACCAAGCAACTTTT</canonical>
            <polymorphic>TATTTTTATCGCTATTACAGAAAATAACGGAGTAGCTAAAATTCTCCTAACTCAAGAAAGAAATTAGAAACAGGAAAAAAATTTGAAAAATTTTTTCCCATAGTGAGAAGTTACTTTTCTATTTTTTTCCCATGAAACAAGTCAAGTGAACAACAGAATTCACTTGTTACATGACGTTACCAAATCAGTAACAAAAAAGTAACGATACAAGTTCAGAATTTGGTCAAAAAATGAGGAAGAAGAACGATTCGAGACTAATACATAATTTGGAGTAGAGACTACTAGAAGAAAATCAAAGGGAATTGGAGTCTGGATGGTTCTGGAAAACAGACTATTTCTCCAGATACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGASATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTGAAATGGAAGCTTTCAAAAAACTGAAACACTAGAATCTCGTCTTGGAAAAGCAAAACCATGAATGTCCCTGCCAAACCAAGCAACTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>321 215 148 131 115 39 31</canonical_bands>
                <polymorphic_bands>321 263 215 131 39 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGGATTTTGAAAGACAATTT</pcr_primer_p1>
		<pcr_primer_p2>CTTCTTCAAAAAGTGAATGAATC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGASATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1076</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>174516</contig_pos>
        <strand>+</strand>
        <context>GAAAACTGTT[A/G]GAATTGASAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTT</left_flank>
        <right_flank>GAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAACTATATTTTTATCGCTATTACAGAAAATAACGGAGTAGCTAAAATTCTCCTAACTCAAGAAAGAAATTAGAAACAGGAAAAAAATTTGAAAAATTTTTTCCCATAGTGAGAAGTTACTTTTCTATTTTTTTCCCATGAAACAAGTCAAGTGAACAACAGAATTCACTTGTTACATGACGTTACCAAATCAGTAACAAAAAAGTAACGATACAAGTTCAGAATTTGGTCAAAAAATGAGGAAGAAGAACGATTCGAGACTAATACATAATTTGGAGTAGAGACTACTAGAAGAAAATCAAAGGGAATTGGAGTCTGGATGGTTCTGGAAAACAGACTATTTCTCCAGATACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTGAAATGGAAGCTTTCAAAAAACTGAAACACTAGAATCTCGTCTTGGAAAAGCAAAACCATGAATGTCCCTGCCAAACCAAG</canonical>
            <polymorphic>TGAAACTATATTTTTATCGCTATTACAGAAAATAACGGAGTAGCTAAAATTCTCCTAACTCAAGAAAGAAATTAGAAACAGGAAAAAAATTTGAAAAATTTTTTCCCATAGTGAGAAGTTACTTTTCTATTTTTTTCCCATGAAACAAGTCAAGTGAACAACAGAATTCACTTGTTACATGACGTTACCAAATCAGTAACAAAAAAGTAACGATACAAGTTCAGAATTTGGTCAAAAAATGAGGAAGAAGAACGATTCGAGACTAATACATAATTTGGAGTAGAGACTACTAGAAGAAAATCAAAGGGAATTGGAGTCTGGATGGTTCTGGAAAACAGACTATTTCTCCAGATACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTRGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTGAAATGGAAGCTTTCAAAAAACTGAAACACTAGAATCTCGTCTTGGAAAAGCAAAACCATGAATGTCCCTGCCAAACCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGGATTTTGAAAGACAATTT</pcr_primer_p1>
		<pcr_primer_p2>CTTCTTCAAAAAGTGAATGAATC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTRGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1077</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>174504</contig_pos>
        <strand>+</strand>
        <context>AGGCCGCCTC[A/C]AGAAAACTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTC</left_flank>
        <right_flank>AGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCTCCCAAAATTGAAACTATATTTTTATCGCTATTACAGAAAATAACGGAGTAGCTAAAATTCTCCTAACTCAAGAAAGAAATTAGAAACAGGAAAAAAATTTGAAAAATTTTTTCCCATAGTGAGAAGTTACTTTTCTATTTTTTTCCCATGAAACAAGTCAAGTGAACAACAGAATTCACTTGTTACATGACGTTACCAAATCAGTAACAAAAAAGTAACGATACAAGTTCAGAATTTGGTCAAAAAATGAGGAAGAAGAACGATTCGAGACTAATACATAATTTGGAGTAGAGACTACTAGAAGAAAATCAAAGGGAATTGGAGTCTGGATGGTTCTGGAAAACAGACTATTTCTCCAGATACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTGAAATGGAAGCTTTCAAAAAACTGAAACACTAGAATCTCGTCTTGGAAAAGCAAAACCATGAATGTCCC</canonical>
            <polymorphic>CCCTCCCAAAATTGAAACTATATTTTTATCGCTATTACAGAAAATAACGGAGTAGCTAAAATTCTCCTAACTCAAGAAAGAAATTAGAAACAGGAAAAAAATTTGAAAAATTTTTTCCCATAGTGAGAAGTTACTTTTCTATTTTTTTCCCATGAAACAAGTCAAGTGAACAACAGAATTCACTTGTTACATGACGTTACCAAATCAGTAACAAAAAAGTAACGATACAAGTTCAGAATTTGGTCAAAAAATGAGGAAGAAGAACGATTCGAGACTAATACATAATTTGGAGTAGAGACTACTAGAAGAAAATCAAAGGGAATTGGAGTCTGGATGGTTCTGGAAAACAGACTATTTCTCCAGATACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCMAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTGAAATGGAAGCTTTCAAAAAACTGAAACACTAGAATCTCGTCTTGGAAAAGCAAAACCATGAATGTCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>503 426 71</canonical_bands>
                <polymorphic_bands>929 71</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGGATTTTGAAAGACAATTT</pcr_primer_p1>
		<pcr_primer_p2>CTTCTTCAAAAAGTGAATGAATC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCMAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1078</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>174483</contig_pos>
        <strand>+</strand>
        <context>TAAAAAACAT[C/T]TGAAAATTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACAT</left_flank>
        <right_flank>TGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACAAGTAACATTTCAAACTCCCTCCCAAAATTGAAACTATATTTTTATCGCTATTACAGAAAATAACGGAGTAGCTAAAATTCTCCTAACTCAAGAAAGAAATTAGAAACAGGAAAAAAATTTGAAAAATTTTTTCCCATAGTGAGAAGTTACTTTTCTATTTTTTTCCCATGAAACAAGTCAAGTGAACAACAGAATTCACTTGTTACATGACGTTACCAAATCAGTAACAAAAAAGTAACGATACAAGTTCAGAATTTGGTCAAAAAATGAGGAAGAAGAACGATTCGAGACTAATACATAATTTGGAGTAGAGACTACTAGAAGAAAATCAAAGGGAATTGGAGTCTGGATGGTTCTGGAAAACAGACTATTTCTCCAGATACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTGAAATGGAAGCTTTCAAAAAACTGAAACACTAGAATCTCGTCTTGGAA</canonical>
            <polymorphic>TCACAAGTAACATTTCAAACTCCCTCCCAAAATTGAAACTATATTTTTATCGCTATTACAGAAAATAACGGAGTAGCTAAAATTCTCCTAACTCAAGAAAGAAATTAGAAACAGGAAAAAAATTTGAAAAATTTTTTCCCATAGTGAGAAGTTACTTTTCTATTTTTTTCCCATGAAACAAGTCAAGTGAACAACAGAATTCACTTGTTACATGACGTTACCAAATCAGTAACAAAAAAGTAACGATACAAGTTCAGAATTTGGTCAAAAAATGAGGAAGAAGAACGATTCGAGACTAATACATAATTTGGAGTAGAGACTACTAGAAGAAAATCAAAGGGAATTGGAGTCTGGATGGTTCTGGAAAACAGACTATTTCTCCAGATACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATYTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTGAAATGGAAGCTTTCAAAAAACTGAAACACTAGAATCTCGTCTTGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGGATTTTGAAAGACAATTT</pcr_primer_p1>
		<pcr_primer_p2>CTTCTTCAAAAAGTGAATGAATC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATYTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1079</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>174436</contig_pos>
        <strand>+</strand>
        <context>ARTAATTCGA[A/G]GGAATCAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGA</left_flank>
        <right_flank>GGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATCTTGCTTTCAGTTGAAACAGAGTATTTTGAACTATTTAAAATTTCACAAGTAACATTTCAAACTCCCTCCCAAAATTGAAACTATATTTTTATCGCTATTACAGAAAATAACGGAGTAGCTAAAATTCTCCTAACTCAAGAAAGAAATTAGAAACAGGAAAAAAATTTGAAAAATTTTTTCCCATAGTGAGAAGTTACTTTTCTATTTTTTTCCCATGAAACAAGTCAAGTGAACAACAGAATTCACTTGTTACATGACGTTACCAAATCAGTAACAAAAAAGTAACGATACAAGTTCAGAATTTGGTCAAAAAATGAGGAAGAAGAACGATTCGAGACTAATACATAATTTGGAGTAGAGACTACTAGAAGAAAATCAAAGGGAATTGGAGTCTGGATGGTTCTGGAAAACAGACTATTTCTCCAGATACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTG</canonical>
            <polymorphic>GTATCTTGCTTTCAGTTGAAACAGAGTATTTTGAACTATTTAAAATTTCACAAGTAACATTTCAAACTCCCTCCCAAAATTGAAACTATATTTTTATCGCTATTACAGAAAATAACGGAGTAGCTAAAATTCTCCTAACTCAAGAAAGAAATTAGAAACAGGAAAAAAATTTGAAAAATTTTTTCCCATAGTGAGAAGTTACTTTTCTATTTTTTTCCCATGAAACAAGTCAAGTGAACAACAGAATTCACTTGTTACATGACGTTACCAAATCAGTAACAAAAAAGTAACGATACAAGTTCAGAATTTGGTCAAAAAATGAGGAAGAAGAACGATTCGAGACTAATACATAATTTGGAGTAGAGACTACTAGAAGAAAATCAAAGGGAATTGGAGTCTGGATGGTTCTGGAAAACAGACTATTTCTCCAGATACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGARGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGACTATTTCTCCAGATACAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTTCTTCAAAAAGTGAATGAATC</pcr_primer_p2>
		<pcr_amplicon_size>278</pcr_amplicon_size>
		<canonical_amplicon>ACAGACTATTTCTCCAGATACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAG</canonical_amplicon>
		<polymorphic_amplicon>ACAGACTATTTCTCCAGATACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGARGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1080</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>174427</contig_pos>
        <strand>+</strand>
        <context>ATTTGGTTGA[A/G]TAATTCGARG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGA</left_flank>
        <right_flank>TAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAGAAAAGTATCTTGCTTTCAGTTGAAACAGAGTATTTTGAACTATTTAAAATTTCACAAGTAACATTTCAAACTCCCTCCCAAAATTGAAACTATATTTTTATCGCTATTACAGAAAATAACGGAGTAGCTAAAATTCTCCTAACTCAAGAAAGAAATTAGAAACAGGAAAAAAATTTGAAAAATTTTTTCCCATAGTGAGAAGTTACTTTTCTATTTTTTTCCCATGAAACAAGTCAAGTGAACAACAGAATTCACTTGTTACATGACGTTACCAAATCAGTAACAAAAAAGTAACGATACAAGTTCAGAATTTGGTCAAAAAATGAGGAAGAAGAACGATTCGAGACTAATACATAATTTGGAGTAGAGACTACTAGAAGAAAATCAAAGGGAATTGGAGTCTGGATGGTTCTGGAAAACAGACTATTTCTCCAGATACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGTTTTCCAAA</canonical>
            <polymorphic>TTTAGAAAAGTATCTTGCTTTCAGTTGAAACAGAGTATTTTGAACTATTTAAAATTTCACAAGTAACATTTCAAACTCCCTCCCAAAATTGAAACTATATTTTTATCGCTATTACAGAAAATAACGGAGTAGCTAAAATTCTCCTAACTCAAGAAAGAAATTAGAAACAGGAAAAAAATTTGAAAAATTTTTTCCCATAGTGAGAAGTTACTTTTCTATTTTTTTCCCATGAAACAAGTCAAGTGAACAACAGAATTCACTTGTTACATGACGTTACCAAATCAGTAACAAAAAAGTAACGATACAAGTTCAGAATTTGGTCAAAAAATGAGGAAGAAGAACGATTCGAGACTAATACATAATTTGGAGTAGAGACTACTAGAAGAAAATCAAAGGGAATTGGAGTCTGGATGGTTCTGGAAAACAGACTATTTCTCCAGATACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGARTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGTTTTCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGACTATTTCTCCAGATACAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTTCTTCAAAAAGTGAATGAATC</pcr_primer_p2>
		<pcr_amplicon_size>278</pcr_amplicon_size>
		<canonical_amplicon>ACAGACTATTTCTCCAGATACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAG</canonical_amplicon>
		<polymorphic_amplicon>ACAGACTATTTCTCCAGATACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGARTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1081</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>174312</contig_pos>
        <strand>+</strand>
        <context>ACTACTAGAA[C/G]AAAATCAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGAAGAACGATTCGAGACTAATACATAATTTGGAGTAGAGACTACTAGAA</left_flank>
        <right_flank>AAAATCAAAGGGAATTGGAGTCTGGATGGTTCTGGAAAACAGACTATTTC</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATATTTTTCGGCAATGAAGATTTTTGGAAGATTGGACCTAGATTCTTATGTTTGAAAGAAGTAAAAAATCCTGATTTTTTTGAAATTTCCCGTTTCCATGTTCTCCCTAAATTTTAGAAAAGTATCTTGCTTTCAGTTGAAACAGAGTATTTTGAACTATTTAAAATTTCACAAGTAACATTTCAAACTCCCTCCCAAAATTGAAACTATATTTTTATCGCTATTACAGAAAATAACGGAGTAGCTAAAATTCTCCTAACTCAAGAAAGAAATTAGAAACAGGAAAAAAATTTGAAAAATTTTTTCCCATAGTGAGAAGTTACTTTTCTATTTTTTTCCCATGAAACAAGTCAAGTGAACAACAGAATTCACTTGTTACATGACGTTACCAAATCAGTAACAAAAAAGTAACGATACAAGTTCAGAATTTGGTCAAAAAATGAGGAAGAAGAACGATTCGAGACTAATACATAATTTGGAGTAGAGACTACTAGAAGAAAATCAAAGGGAATTGGAGTCTGGATGGTTCTGGAAAACAGACTATTTCTCCAGATACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGC</canonical>
            <polymorphic>AATATATTTTTCGGCAATGAAGATTTTTGGAAGATTGGACCTAGATTCTTATGTTTGAAAGAAGTAAAAAATCCTGATTTTTTTGAAATTTCCCGTTTCCATGTTCTCCCTAAATTTTAGAAAAGTATCTTGCTTTCAGTTGAAACAGAGTATTTTGAACTATTTAAAATTTCACAAGTAACATTTCAAACTCCCTCCCAAAATTGAAACTATATTTTTATCGCTATTACAGAAAATAACGGAGTAGCTAAAATTCTCCTAACTCAAGAAAGAAATTAGAAACAGGAAAAAAATTTGAAAAATTTTTTCCCATAGTGAGAAGTTACTTTTCTATTTTTTTCCCATGAAACAAGTCAAGTGAACAACAGAATTCACTTGTTACATGACGTTACCAAATCAGTAACAAAAAAGTAACGATACAAGTTCAGAATTTGGTCAAAAAATGAGGAAGAAGAACGATTCGAGACTAATACATAATTTGGAGTAGAGACTACTAGAASAAAATCAAAGGGAATTGGAGTCTGGATGGTTCTGGAAAACAGACTATTTCTCCAGATACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAGTCAAGTGAACAACAGAAT</pcr_primer_p1>
		<pcr_primer_p2>CATGAAAATTGTCTTTCAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACAAGTCAAGTGAACAACAGAATTCACTTGTTACATGACGTTACCAAATCAGTAACAAAAAAGTAACGATACAAGTTCAGAATTTGGTCAAAAAATGAGGAAGAAGAACGATTCGAGACTAATACATAATTTGGAGTAGAGACTACTAGAAGAAAATCAAAGGGAATTGGAGTCTGGATGGTTCTGGAAAACAGACTATTTCTCCAGATACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATG</canonical_amplicon>
		<polymorphic_amplicon>ACAAGTCAAGTGAACAACAGAATTCACTTGTTACATGACGTTACCAAATCAGTAACAAAAAAGTAACGATACAAGTTCAGAATTTGGTCAAAAAATGAGGAAGAAGAACGATTCGAGACTAATACATAATTTGGAGTAGAGACTACTAGAASAAAATCAAAGGGAATTGGAGTCTGGATGGTTCTGGAAAACAGACTATTTCTCCAGATACAAATTTGATTTTTTTTTGGATTTTGAAAGACAATTTTCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1082</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>198795</contig_pos>
        <strand></strand>
        <context>AGTTTTTCGG[A/T]AAAGGAGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGTTGGCCAAAGTAGAACATTTGAAAAAAGAGGGAAATGAGTTTTTCGG</left_flank>
        <right_flank>AAAGGAGAATTCGAGAAGGCTGATGAGAAATATCAGGTAGGATTTGAAAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTCCAGGCCCGTCGAGTTGGTGCTAAGCGAGTATTCCTGCCAGCAGAGAACCGACGAGATTTCGATGATCTCCCAGAATTCATGAAATCCGAATTGGACATTCGATTCGTGTCTCATTACGATGAGCTCTATGAGCATCTCTTCCAATGATTCTTCTTCTACACGTGTCTTCTCTTTTCTTCTCTATAGAGAACTCTTTAGATAAATTTCGTTGATTCACTTTATCTCTTTTTTTCACCTCTTTTTTCTTGTTTACTGTTGATTATGTCGAGTGATTCTTTAGAACCAAAAAACCCATTTTTCTTTTTTGCCATGTTTTGTTTCTATAACCAGGTTGTACCCAACTGAATACATTTGCCTCGTTTTGAAACTCAAATTTATGTCCATTTTTAGCTTTATCTGTATAGTATGGCAGTTATCGAGGAGATTGTCGAGGGAGAGGAGGAGCAGTTGGCCAAAGTAGAACATTTGAAAAAAGAGGGAAATGAGTTTTTCGGAAAAGGAGAATTCGAGAAGGCTGATGAGAAATATCAGGTAGGATTTGAAACGACATAGCCTACATGAATTTTCTAGGTCACGTATGGTCCAGGAATGGTCTGTCATTGAAATGAAAAGTTTTAAGGCAATTCAAGATGACGGCATAGGAAATGCATGTTGAGAAAATTAAGCCACCACAATAGATAACATAGGAAACATCAGAAAAAGTTAAGACACCATGGTTAATTAACCTAGAAAACGCATCAGGTGCATGTTGGGCCATTTCTAGACCGTCAACTAAGGTGGCCTAGAAAAAACCATGTTGAGAAAGTTAGGCCACCATGGTAAATAGCCTATTTTCAGGAAGCCATCACCGCCTGTCACCAACGTCAACTGAAATTCAATCGATACTCCTCTCAAATTCTTCAGCAGCACTTATCAAACTTCGAAAATGGGAACATGCAGTAGAAGCAGCCACTAAATCTATTGAGGTCAATTTCAATCAAATTTTAAATTTTAAA</canonical>
            <polymorphic>CTTTCCAGGCCCGTCGAGTTGGTGCTAAGCGAGTATTCCTGCCAGCAGAGAACCGACGAGATTTCGATGATCTCCCAGAATTCATGAAATCCGAATTGGACATTCGATTCGTGTCTCATTACGATGAGCTCTATGAGCATCTCTTCCAATGATTCTTCTTCTACACGTGTCTTCTCTTTTCTTCTCTATAGAGAACTCTTTAGATAAATTTCGTTGATTCACTTTATCTCTTTTTTTCACCTCTTTTTTCTTGTTTACTGTTGATTATGTCGAGTGATTCTTTAGAACCAAAAAACCCATTTTTCTTTTTTGCCATGTTTTGTTTCTATAACCAGGTTGTACCCAACTGAATACATTTGCCTCGTTTTGAAACTCAAATTTATGTCCATTTTTAGCTTTATCTGTATAGTATGGCAGTTATCGAGGAGATTGTCGAGGGAGAGGAGGAGCAGTTGGCCAAAGTAGAACATTTGAAAAAAGAGGGAAATGAGTTTTTCGGWAAAGGAGAATTCGAGAAGGCTGATGAGAAATATCAGGTAGGATTTGAAACGACATAGCCTACATGAATTTTCTAGGTCACGTATGGTCCAGGAATGGTCTGTCATTGAAATGAAAAGTTTTAAGGCAATTCAAGATGACGGCATAGGAAATGCATGTTGAGAAAATTAAGCCACCACAATAGATAACATAGGAAACATCAGAAAAAGTTAAGACACCATGGTTAATTAACCTAGAAAACGCATCAGGTGCATGTTGGGCCATTTCTAGACCGTCAACTAAGGTGGCCTAGAAAAAACCATGTTGAGAAAGTTAGGCCACCATGGTAAATAGCCTATTTTCAGGAAGCCATCACCGCCTGTCACCAACGTCAACTGAAATTCAATCGATACTCCTCTCAAATTCTTCAGCAGCACTTATCAAACTTCGAAAATGGGAACATGCAGTAGAAGCAGCCACTAAATCTATTGAGGTCAATTTCAATCAAATTTTAAATTTTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>406 300 202 92</canonical_bands>
                <polymorphic_bands>608 300 92</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGCCATGTTTTGTTTCTATAAC</pcr_primer_p1>
		<pcr_primer_p2>GCTATGTCGTTTCAAATCCTAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGCCATGTTTTGTTTCTATAACCAGGTTGTACCCAACTGAATACATTTGCCTCGTTTTGAAACTCAAATTTATGTCCATTTTTAGCTTTATCTGTATAGTATGGCAGTTATCGAGGAGATTGTCGAGGGAGAGGAGGAGCAGTTGGCCAAAGTAGAACATTTGAAAAAAGAGGGAAATGAGTTTTTCGGAAAAGGAGAATTCGAGAAGGCTGATGAGAAATATCAGGTAGGATTTGAAACGACATAGC</canonical_amplicon>
		<polymorphic_amplicon>TTGCCATGTTTTGTTTCTATAACCAGGTTGTACCCAACTGAATACATTTGCCTCGTTTTGAAACTCAAATTTATGTCCATTTTTAGCTTTATCTGTATAGTATGGCAGTTATCGAGGAGATTGTCGAGGGAGAGGAGGAGCAGTTGGCCAAAGTAGAACATTTGAAAAAAGAGGGAAATGAGTTTTTCGGWAAAGGAGAATTCGAGAAGGCTGATGAGAAATATCAGGTAGGATTTGAAACGACATAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1083</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>201294</contig_pos>
        <strand>+</strand>
        <context>TCATGTAATT[C/G]TAAAAACACA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTTTTAAAACGAGATGGCAGTCGTAGTGTAGCCTCGAGTTCATGTAATT</left_flank>
        <right_flank>TAAAAACACAGTGTGAAACAGTTATTCACAAAATACAAATGTGGTTGATT</right_flank>
        <qual_score>134</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTGTCAACTGATAAAATGTTTATCAAAATATTAACAACATTTTATCAGTTGACAAAATTTTTATATCTTGCATAGGAACTGAGATAATTGAGCTAAAAGTTGACAGTTTGGGTGGACTGCTATTATAGGAAATGCGGTAACTGTTAAAAGGAGTTCTAAAATTTCTGGATTTTTTTGTTGAAAGAATGTTGGATCAGCTAAAATCGATTCTTTCCAGAAACGGAAGACAAATGGCACTCGTGAAGATCCTCAAAAGACCGCAATGGACGAGAAAGTTGGCGAACAGCCAGTCGTCCCGAACTCAAAAAGTCCAGAAGACAATAAGAAAAAAGAGAAGGACTTTGGGTTGAAAAGCGAAGAAGTTCCTGTGAAAATTGTCAAAAAGAAAGTGGAACCACCGAAGAAAGAGGAACAGGAAGCCAGTGTTTTTGAGGTGAGAGATAATATTTTTAAAACGAGATGGCAGTCGTAGTGTAGCCTCGAGTTCATGTAATTGTAAAAACACAGTGTGAAACAGTTATTCACAAAATACAAATGTGGTTGATTTTTAGTAACAAAAACTGTCAGAATTATGAAACTGTCATACGATTTAGTAAGATGAGTAAGTTAAAAATCACGGTGTTCTTAACGGCTTTTTAAATTTTTAGGTGATTTATTTTGTGCAAAATGGTGTGTATGGGGATACTGTAGTTCTAATAGAAGACCACCAAAACTTTGAGCTCCATTATCTCAATTCCTGTAAGACATATCAAAAAATTATCAACTGATAAAATATTGGTGATAAATATTATGATAAACATTTTATCAGTAGACAACTTTTTGATATCTTTCACAGGAATCAAAATAATTGAGCTCAAAGTTAGCGGTTTGGGTGGGTATCTAACAGAGGTAATACGGTAGACTTAAAATTTTTTATCCTGAACCACACGTTTACTGAAGAGCATTTATCTTGTCAGAAATTGGAGTATATAGAAGCACGTCTAGGTTTTTATAAAA</canonical>
            <polymorphic>AATTTTGTCAACTGATAAAATGTTTATCAAAATATTAACAACATTTTATCAGTTGACAAAATTTTTATATCTTGCATAGGAACTGAGATAATTGAGCTAAAAGTTGACAGTTTGGGTGGACTGCTATTATAGGAAATGCGGTAACTGTTAAAAGGAGTTCTAAAATTTCTGGATTTTTTTGTTGAAAGAATGTTGGATCAGCTAAAATCGATTCTTTCCAGAAACGGAAGACAAATGGCACTCGTGAAGATCCTCAAAAGACCGCAATGGACGAGAAAGTTGGCGAACAGCCAGTCGTCCCGAACTCAAAAAGTCCAGAAGACAATAAGAAAAAAGAGAAGGACTTTGGGTTGAAAAGCGAAGAAGTTCCTGTGAAAATTGTCAAAAAGAAAGTGGAACCACCGAAGAAAGAGGAACAGGAAGCCAGTGTTTTTGAGGTGAGAGATAATATTTTTAAAACGAGATGGCAGTCGTAGTGTAGCCTCGAGTTCATGTAATTSTAAAAACACAGTGTGAAACAGTTATTCACAAAATACAAATGTGGTTGATTTTTAGTAACAAAAACTGTCAGAATTATGAAACTGTCATACGATTTAGTAAGATGAGTAAGTTAAAAATCACGGTGTTCTTAACGGCTTTTTAAATTTTTAGGTGATTTATTTTGTGCAAAATGGTGTGTATGGGGATACTGTAGTTCTAATAGAAGACCACCAAAACTTTGAGCTCCATTATCTCAATTCCTGTAAGACATATCAAAAAATTATCAACTGATAAAATATTGGTGATAAATATTATGATAAACATTTTATCAGTAGACAACTTTTTGATATCTTTCACAGGAATCAAAATAATTGAGCTCAAAGTTAGCGGTTTGGGTGGGTATCTAACAGAGGTAATACGGTAGACTTAAAATTTTTTATCCTGAACCACACGTTTACTGAAGAGCATTTATCTTGTCAGAAATTGGAGTATATAGAAGCACGTCTAGGTTTTTATAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTGTCAAAAAGAAAGTGGA</pcr_primer_p1>
		<pcr_primer_p2>CACCGTGATTTTTAACTTACTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTGTCAAAAAGAAAGTGGAACCACCGAAGAAAGAGGAACAGGAAGCCAGTGTTTTTGAGGTGAGAGATAATATTTTTAAAACGAGATGGCAGTCGTAGTGTAGCCTCGAGTTCATGTAATTGTAAAAACACAGTGTGAAACAGTTATTCACAAAATACAAATGTGGTTGATTTTTAGTAACAAAAACTGTCAGAATTATGAAACTGTCATACGATTTAGTAAGATGAGTAAGTTAAAAATCACGGTG</canonical_amplicon>
		<polymorphic_amplicon>AAATTGTCAAAAAGAAAGTGGAACCACCGAAGAAAGAGGAACAGGAAGCCAGTGTTTTTGAGGTGAGAGATAATATTTTTAAAACGAGATGGCAGTCGTAGTGTAGCCTCGAGTTCATGTAATTSTAAAAACACAGTGTGAAACAGTTATTCACAAAATACAAATGTGGTTGATTTTTAGTAACAAAAACTGTCAGAATTATGAAACTGTCATACGATTTAGTAAGATGAGTAAGTTAAAAATCACGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1084</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>201272</contig_pos>
        <strand>+</strand>
        <context>CAGTCGTAGT[A/G]TAGCCTCGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTTTTGAGGTGAGAGATAATATTTTTAAAACGAGATGGCAGTCGTAGT</left_flank>
        <right_flank>TAGCCTCGAGTTCATGTAATTGTAAAAACACAGTGTGAAACAGTTATTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATTCCTGCCAGAGATATGAAAATTTTGTCAACTGATAAAATGTTTATCAAAATATTAACAACATTTTATCAGTTGACAAAATTTTTATATCTTGCATAGGAACTGAGATAATTGAGCTAAAAGTTGACAGTTTGGGTGGACTGCTATTATAGGAAATGCGGTAACTGTTAAAAGGAGTTCTAAAATTTCTGGATTTTTTTGTTGAAAGAATGTTGGATCAGCTAAAATCGATTCTTTCCAGAAACGGAAGACAAATGGCACTCGTGAAGATCCTCAAAAGACCGCAATGGACGAGAAAGTTGGCGAACAGCCAGTCGTCCCGAACTCAAAAAGTCCAGAAGACAATAAGAAAAAAGAGAAGGACTTTGGGTTGAAAAGCGAAGAAGTTCCTGTGAAAATTGTCAAAAAGAAAGTGGAACCACCGAAGAAAGAGGAACAGGAAGCCAGTGTTTTTGAGGTGAGAGATAATATTTTTAAAACGAGATGGCAGTCGTAGTGTAGCCTCGAGTTCATGTAATTGTAAAAACACAGTGTGAAACAGTTATTCACAAAATACAAATGTGGTTGATTTTTAGTAACAAAAACTGTCAGAATTATGAAACTGTCATACGATTTAGTAAGATGAGTAAGTTAAAAATCACGGTGTTCTTAACGGCTTTTTAAATTTTTAGGTGATTTATTTTGTGCAAAATGGTGTGTATGGGGATACTGTAGTTCTAATAGAAGACCACCAAAACTTTGAGCTCCATTATCTCAATTCCTGTAAGACATATCAAAAAATTATCAACTGATAAAATATTGGTGATAAATATTATGATAAACATTTTATCAGTAGACAACTTTTTGATATCTTTCACAGGAATCAAAATAATTGAGCTCAAAGTTAGCGGTTTGGGTGGGTATCTAACAGAGGTAATACGGTAGACTTAAAATTTTTTATCCTGAACCACACGTTTACTGAAGAGCATTTATCTTGTCAGAAATTGGAGTATATAGAA</canonical>
            <polymorphic>CGATTCCTGCCAGAGATATGAAAATTTTGTCAACTGATAAAATGTTTATCAAAATATTAACAACATTTTATCAGTTGACAAAATTTTTATATCTTGCATAGGAACTGAGATAATTGAGCTAAAAGTTGACAGTTTGGGTGGACTGCTATTATAGGAAATGCGGTAACTGTTAAAAGGAGTTCTAAAATTTCTGGATTTTTTTGTTGAAAGAATGTTGGATCAGCTAAAATCGATTCTTTCCAGAAACGGAAGACAAATGGCACTCGTGAAGATCCTCAAAAGACCGCAATGGACGAGAAAGTTGGCGAACAGCCAGTCGTCCCGAACTCAAAAAGTCCAGAAGACAATAAGAAAAAAGAGAAGGACTTTGGGTTGAAAAGCGAAGAAGTTCCTGTGAAAATTGTCAAAAAGAAAGTGGAACCACCGAAGAAAGAGGAACAGGAAGCCAGTGTTTTTGAGGTGAGAGATAATATTTTTAAAACGAGATGGCAGTCGTAGTRTAGCCTCGAGTTCATGTAATTGTAAAAACACAGTGTGAAACAGTTATTCACAAAATACAAATGTGGTTGATTTTTAGTAACAAAAACTGTCAGAATTATGAAACTGTCATACGATTTAGTAAGATGAGTAAGTTAAAAATCACGGTGTTCTTAACGGCTTTTTAAATTTTTAGGTGATTTATTTTGTGCAAAATGGTGTGTATGGGGATACTGTAGTTCTAATAGAAGACCACCAAAACTTTGAGCTCCATTATCTCAATTCCTGTAAGACATATCAAAAAATTATCAACTGATAAAATATTGGTGATAAATATTATGATAAACATTTTATCAGTAGACAACTTTTTGATATCTTTCACAGGAATCAAAATAATTGAGCTCAAAGTTAGCGGTTTGGGTGGGTATCTAACAGAGGTAATACGGTAGACTTAAAATTTTTTATCCTGAACCACACGTTTACTGAAGAGCATTTATCTTGTCAGAAATTGGAGTATATAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>140 128 122 77 74 52 51 47 42 38 32 30 29 28 21 15 13 12 11 10 6 6 5 5 2 2 2</canonical_bands>
                <polymorphic_bands>140 128 122 77 74 68 52 51 47 42 32 29 28 21 15 13 12 11 10 6 6 5 5 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACTCAAAAAGTCCAGAAGAC</pcr_primer_p1>
		<pcr_primer_p2>AATCAACCACATTTGTATTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAACTCAAAAAGTCCAGAAGACAATAAGAAAAAAGAGAAGGACTTTGGGTTGAAAAGCGAAGAAGTTCCTGTGAAAATTGTCAAAAAGAAAGTGGAACCACCGAAGAAAGAGGAACAGGAAGCCAGTGTTTTTGAGGTGAGAGATAATATTTTTAAAACGAGATGGCAGTCGTAGTGTAGCCTCGAGTTCATGTAATTGTAAAAACACAGTGTGAAACAGTTATTCACAAAATACAAATGTGGTTGATT</canonical_amplicon>
		<polymorphic_amplicon>GAACTCAAAAAGTCCAGAAGACAATAAGAAAAAAGAGAAGGACTTTGGGTTGAAAAGCGAAGAAGTTCCTGTGAAAATTGTCAAAAAGAAAGTGGAACCACCGAAGAAAGAGGAACAGGAAGCCAGTGTTTTTGAGGTGAGAGATAATATTTTTAAAACGAGATGGCAGTCGTAGTRTAGCCTCGAGTTCATGTAATTGTAAAAACACAGTGTGAAACAGTTATTCACAAAATACAAATGTGGTTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1089</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>253634</contig_pos>
        <strand>+</strand>
        <context>CTCCGAATTT[G/T]TGGGGCCTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTCCGCTCCTGCCTCCGTCTACTTTCAAGAAATGTTTTTCTCCGAATTT</left_flank>
        <right_flank>TGGGGCCTCCGAATCTTCGATGATTTCTTTTTTTTTAATTGCTGTATTGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTTCCGATCCAGACTTCTTCAAAGAGAAATTGATTCTTCCCGAAGAGCCAAAAGAAGAACGATCTCCACCTCGAAAAACAGTCCAGAAGCAGATGCATGAAAGATATATCAGAATCATTCGAGAAATGAAAGAACAATCTGAAAGGGAGAAAAAGGAAAAGGAGGAGTTGGAAGAGGAGGAAGAAGAAGAGGAAGATGAAGGGGAAATTGATTATAATCAGCCATCAACGTCATCTACAGTTCCATCAAGTAGTAGACGTCCTTCTAGAAGACGTTCTTCCACTGGAGCCACCAATCGGAAGAGGAAGTATAGTAGAAGAGCTGGATCACCGGCTGTTTTTGCGGGGACTTTGATAAAAAAGGTAGGTTTAAAATAAAATGAAACTTTCCGTGAAAAGTGGGTAGAGTCCGGGGCGGAGCCTAATCGCAAGGTGCATACGGTTTTTAGGTTCCGCTCCTGCCTCCGTCTACTTTCAAGAAATGTTTTTCTCCGAATTTTTGGGGCCTCCGAATCTTCGATGATTTCTTTTTTTTTAATTGCTGTATTGTTTCAAATAACTTTCAGCATAACTAATCTAGCGCTCATCCTAATTTTTTCTTGACAGGATTCTCACGAGTCGTCCCGAAGCATGCCAACCTCTGTCGGATGGACTCCCGTCGTTGTCTCTCTCGGAGACGTAGACCGCCCGACGACGTCTCGATACTCTGCAGATGACGCTGATAATGGAGCAGATATTCGTGGAGAAATCACCAAATTCCTTGAGGATCTCATTGATAAACATCCCGAAACCCTGGATGCTATTGAGAACGTCCGAATGAGTCGCCTTGGAAGAGGACGTCCAAGTTCAGAATCTCATGAATCTGCACCAATAATTGAACTGGCTTCATCATCCCAACCGAGCACCTCAGCGGGACCATCTACTTCGACAGCTCATCAGAGTTTGGTCGTGTCACTCATGGAATCTTTGCGGTTCCTCATGTACTAAGGAATGCTGCGTG</canonical>
            <polymorphic>CGTTCCGATCCAGACTTCTTCAAAGAGAAATTGATTCTTCCCGAAGAGCCAAAAGAAGAACGATCTCCACCTCGAAAAACAGTCCAGAAGCAGATGCATGAAAGATATATCAGAATCATTCGAGAAATGAAAGAACAATCTGAAAGGGAGAAAAAGGAAAAGGAGGAGTTGGAAGAGGAGGAAGAAGAAGAGGAAGATGAAGGGGAAATTGATTATAATCAGCCATCAACGTCATCTACAGTTCCATCAAGTAGTAGACGTCCTTCTAGAAGACGTTCTTCCACTGGAGCCACCAATCGGAAGAGGAAGTATAGTAGAAGAGCTGGATCACCGGCTGTTTTTGCGGGGACTTTGATAAAAAAGGTAGGTTTAAAATAAAATGAAACTTTCCGTGAAAAGTGGGTAGAGTCCGGGGCGGAGCCTAATCGCAAGGTGCATACGGTTTTTAGGTTCCGCTCCTGCCTCCGTCTACTTTCAAGAAATGTTTTTCTCCGAATTTKTGGGGCCTCCGAATCTTCGATGATTTCTTTTTTTTTAATTGCTGTATTGTTTCAAATAACTTTCAGCATAACTAATCTAGCGCTCATCCTAATTTTTTCTTGACAGGATTCTCACGAGTCGTCCCGAAGCATGCCAACCTCTGTCGGATGGACTCCCGTCGTTGTCTCTCTCGGAGACGTAGACCGCCCGACGACGTCTCGATACTCTGCAGATGACGCTGATAATGGAGCAGATATTCGTGGAGAAATCACCAAATTCCTTGAGGATCTCATTGATAAACATCCCGAAACCCTGGATGCTATTGAGAACGTCCGAATGAGTCGCCTTGGAAGAGGACGTCCAAGTTCAGAATCTCATGAATCTGCACCAATAATTGAACTGGCTTCATCATCCCAACCGAGCACCTCAGCGGGACCATCTACTTCGACAGCTCATCAGAGTTTGGTCGTGTCACTCATGGAATCTTTGCGGTTCCTCATGTACTAAGGAATGCTGCGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATAGTAGAAGAGCTGGATCACC</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAACAATACAGCAATTAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TATAGTAGAAGAGCTGGATCACCGGCTGTTTTTGCGGGGACTTTGATAAAAAAGGTAGGTTTAAAATAAAATGAAACTTTCCGTGAAAAGTGGGTAGAGTCCGGGGCGGAGCCTAATCGCAAGGTGCATACGGTTTTTAGGTTCCGCTCCTGCCTCCGTCTACTTTCAAGAAATGTTTTTCTCCGAATTTTTGGGGCCTCCGAATCTTCGATGATTTCTTTTTTTTTAATTGCTGTATTGTTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>TATAGTAGAAGAGCTGGATCACCGGCTGTTTTTGCGGGGACTTTGATAAAAAAGGTAGGTTTAAAATAAAATGAAACTTTCCGTGAAAAGTGGGTAGAGTCCGGGGCGGAGCCTAATCGCAAGGTGCATACGGTTTTTAGGTTCCGCTCCTGCCTCCGTCTACTTTCAAGAAATGTTTTTCTCCGAATTTKTGGGGCCTCCGAATCTTCGATGATTTCTTTTTTTTTAATTGCTGTATTGTTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1126</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>331619</contig_pos>
        <strand></strand>
        <context>AATTATTCTT[A/T]TTCTGGAGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTCATTAAAAGGCTTGAAAACACAACAGAAGACGAAGAAATTATTCTT</left_flank>
        <right_flank>TTCTGGAGAGGGTTCAATCTAGAAAACCGTCATCCGCGAACTCTGAAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAATCAAGACGAACCCCAAATCCCACTCCTCCATTCAAAATGACAAGTGCATCATCCTTCGTACAAAAGATAAGAGTCTGCAGAAAGAGCAAATAGATAAGACAAAAGGCATCACCACGCTTTTTTTTGTTGTAGACCCTATTTCTCCGGCTGGTCTCACTACTTTCACACAGCTGAAATTATGCTTGAATATCGTACTTTTCTAGTTTACTATCAACTGGAAGCTGACGAGCTAGCAGAACCCATAAGTGTGCAGGTTTTTTTGAAGATCTACTTTATATTATTAGAACATTAAAATTCCAGTTCCCTGGGCACATTTGGCAACATCGAGACATTTTTATGGCTGAGCTAGAATTGAAGATACCTGAAGTTTCTGAAAACTTCAAAATAAAATATAACGATGTAGATGGTGCTATTTTGAAAGTTCGGGGAGCGGATGATTTTGAAAAATTCATTAAAAGGCTTGAAAACACAACAGAAGACGAAGAAATTATTCTTATTCTGGAGAGGGTTCAATCTAGAAAACCGTCATCCGCGAACTCTGAAAATCATCATCGAATTTTTCCTTCTGAACTTCAACGTGGAAAATATGTGGGAAATGGGGTTCATGGCTCAGTTATAATGTAAAAAATTAGGTCAAAAGAACGGGGAAAACCTGTAAGTTAAGGGCTCGACATGAGAAATCAGATAAATGGTATGTGATCAAGACGATTCTATCACAAAACAATGACAAAAAGGAGTATGAGAAGGAGATTGTTGCCTATGAAGAGGTAATTGAATTGATTTGAAAATTCGTATTTAAAAAATTTGAAAATTTGAACCTAATTCTATTCAAAATCAAATAAATTTTCAGTGCTCTAAATCAGCATACGTTGTCGGCTATTATGGATGTGAAGTGAGCTCAACGAAAAAAGAGCTGGTGCTTGAGTACATGAACCGTGGAGATTTCCGTCAATTCGGTGCTCTTCCATTCCCTGTTCATCAAAGTGTTACGTTATC</canonical>
            <polymorphic>ACAATCAAGACGAACCCCAAATCCCACTCCTCCATTCAAAATGACAAGTGCATCATCCTTCGTACAAAAGATAAGAGTCTGCAGAAAGAGCAAATAGATAAGACAAAAGGCATCACCACGCTTTTTTTTGTTGTAGACCCTATTTCTCCGGCTGGTCTCACTACTTTCACACAGCTGAAATTATGCTTGAATATCGTACTTTTCTAGTTTACTATCAACTGGAAGCTGACGAGCTAGCAGAACCCATAAGTGTGCAGGTTTTTTTGAAGATCTACTTTATATTATTAGAACATTAAAATTCCAGTTCCCTGGGCACATTTGGCAACATCGAGACATTTTTATGGCTGAGCTAGAATTGAAGATACCTGAAGTTTCTGAAAACTTCAAAATAAAATATAACGATGTAGATGGTGCTATTTTGAAAGTTCGGGGAGCGGATGATTTTGAAAAATTCATTAAAAGGCTTGAAAACACAACAGAAGACGAAGAAATTATTCTTWTTCTGGAGAGGGTTCAATCTAGAAAACCGTCATCCGCGAACTCTGAAAATCATCATCGAATTTTTCCTTCTGAACTTCAACGTGGAAAATATGTGGGAAATGGGGTTCATGGCTCAGTTATAATGTAAAAAATTAGGTCAAAAGAACGGGGAAAACCTGTAAGTTAAGGGCTCGACATGAGAAATCAGATAAATGGTATGTGATCAAGACGATTCTATCACAAAACAATGACAAAAAGGAGTATGAGAAGGAGATTGTTGCCTATGAAGAGGTAATTGAATTGATTTGAAAATTCGTATTTAAAAAATTTGAAAATTTGAACCTAATTCTATTCAAAATCAAATAAATTTTCAGTGCTCTAAATCAGCATACGTTGTCGGCTATTATGGATGTGAAGTGAGCTCAACGAAAAAAGAGCTGGTGCTTGAGTACATGAACCGTGGAGATTTCCGTCAATTCGGTGCTCTTCCATTCCCTGTTCATCAAAGTGTTACGTTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTCATTAAAAGGCTTGA</pcr_primer_p1>
		<pcr_primer_p2>CCATTTATCTGATTTCTCATGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTCATTAAAAGGCTTGAAAACACAACAGAAGACGAAGAAATTATTCTTATTCTGGAGAGGGTTCAATCTAGAAAACCGTCATCCGCGAACTCTGAAAATCATCATCGAATTTTTCCTTCTGAACTTCAACGTGGAAAATATGTGGGAAATGGGGTTCATGGCTCAGTTATAATGTAAAAAATTAGGTCAAAAGAACGGGGAAAACCTGTAAGTTAAGGGCTCGACATGAGAAATCAGATAAATGG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTCATTAAAAGGCTTGAAAACACAACAGAAGACGAAGAAATTATTCTTWTTCTGGAGAGGGTTCAATCTAGAAAACCGTCATCCGCGAACTCTGAAAATCATCATCGAATTTTTCCTTCTGAACTTCAACGTGGAAAATATGTGGGAAATGGGGTTCATGGCTCAGTTATAATGTAAAAAATTAGGTCAAAAGAACGGGGAAAACCTGTAAGTTAAGGGCTCGACATGAGAAATCAGATAAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1127</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>331748</contig_pos>
        <strand></strand>
        <context>TATAATGTAA[A/G]AAATTAGGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACGTGGAAAATATGTGGGAAATGGGGTTCATGGCTCAGTTATAATGTAA</left_flank>
        <right_flank>AAATTAGGTCAAAAGAACGGGGAAAACCTGTAAGTTAAGGGCTCGACATG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGTAGACCCTATTTCTCCGGCTGGTCTCACTACTTTCACACAGCTGAAATTATGCTTGAATATCGTACTTTTCTAGTTTACTATCAACTGGAAGCTGACGAGCTAGCAGAACCCATAAGTGTGCAGGTTTTTTTGAAGATCTACTTTATATTATTAGAACATTAAAATTCCAGTTCCCTGGGCACATTTGGCAACATCGAGACATTTTTATGGCTGAGCTAGAATTGAAGATACCTGAAGTTTCTGAAAACTTCAAAATAAAATATAACGATGTAGATGGTGCTATTTTGAAAGTTCGGGGAGCGGATGATTTTGAAAAATTCATTAAAAGGCTTGAAAACACAACAGAAGACGAAGAAATTATTCTTATTCTGGAGAGGGTTCAATCTAGAAAACCGTCATCCGCGAACTCTGAAAATCATCATCGAATTTTTCCTTCTGAACTTCAACGTGGAAAATATGTGGGAAATGGGGTTCATGGCTCAGTTATAATGTAAAAAATTAGGTCAAAAGAACGGGGAAAACCTGTAAGTTAAGGGCTCGACATGAGAAATCAGATAAATGGTATGTGATCAAGACGATTCTATCACAAAACAATGACAAAAAGGAGTATGAGAAGGAGATTGTTGCCTATGAAGAGGTAATTGAATTGATTTGAAAATTCGTATTTAAAAAATTTGAAAATTTGAACCTAATTCTATTCAAAATCAAATAAATTTTCAGTGCTCTAAATCAGCATACGTTGTCGGCTATTATGGATGTGAAGTGAGCTCAACGAAAAAAGAGCTGGTGCTTGAGTACATGAACCGTGGAGATTTCCGTCAATTCGGTGCTCTTCCATTCCCTGTTCATCAAAGTGTTACGTTATCACTGATACGAGCGATACGTCATGTGTGGAACAGTGGACCCGGGTACATCCACAGGGATATCAAGCCTGAAAATATCCTAGTCAATTCACAAGGAGATGTGAAGATTTGTGATTTTGGTGCGGCCAAAGT</canonical>
            <polymorphic>GTTGTAGACCCTATTTCTCCGGCTGGTCTCACTACTTTCACACAGCTGAAATTATGCTTGAATATCGTACTTTTCTAGTTTACTATCAACTGGAAGCTGACGAGCTAGCAGAACCCATAAGTGTGCAGGTTTTTTTGAAGATCTACTTTATATTATTAGAACATTAAAATTCCAGTTCCCTGGGCACATTTGGCAACATCGAGACATTTTTATGGCTGAGCTAGAATTGAAGATACCTGAAGTTTCTGAAAACTTCAAAATAAAATATAACGATGTAGATGGTGCTATTTTGAAAGTTCGGGGAGCGGATGATTTTGAAAAATTCATTAAAAGGCTTGAAAACACAACAGAAGACGAAGAAATTATTCTTATTCTGGAGAGGGTTCAATCTAGAAAACCGTCATCCGCGAACTCTGAAAATCATCATCGAATTTTTCCTTCTGAACTTCAACGTGGAAAATATGTGGGAAATGGGGTTCATGGCTCAGTTATAATGTAARAAATTAGGTCAAAAGAACGGGGAAAACCTGTAAGTTAAGGGCTCGACATGAGAAATCAGATAAATGGTATGTGATCAAGACGATTCTATCACAAAACAATGACAAAAAGGAGTATGAGAAGGAGATTGTTGCCTATGAAGAGGTAATTGAATTGATTTGAAAATTCGTATTTAAAAAATTTGAAAATTTGAACCTAATTCTATTCAAAATCAAATAAATTTTCAGTGCTCTAAATCAGCATACGTTGTCGGCTATTATGGATGTGAAGTGAGCTCAACGAAAAAAGAGCTGGTGCTTGAGTACATGAACCGTGGAGATTTCCGTCAATTCGGTGCTCTTCCATTCCCTGTTCATCAAAGTGTTACGTTATCACTGATACGAGCGATACGTCATGTGTGGAACAGTGGACCCGGGTACATCCACAGGGATATCAAGCCTGAAAATATCCTAGTCAATTCACAAGGAGATGTGAAGATTTGTGATTTTGGTGCGGCCAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTCATTAAAAGGCTTGA</pcr_primer_p1>
		<pcr_primer_p2>CCATTTATCTGATTTCTCATGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTCATTAAAAGGCTTGAAAACACAACAGAAGACGAAGAAATTATTCTTATTCTGGAGAGGGTTCAATCTAGAAAACCGTCATCCGCGAACTCTGAAAATCATCATCGAATTTTTCCTTCTGAACTTCAACGTGGAAAATATGTGGGAAATGGGGTTCATGGCTCAGTTATAATGTAAAAAATTAGGTCAAAAGAACGGGGAAAACCTGTAAGTTAAGGGCTCGACATGAGAAATCAGATAAATGG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTCATTAAAAGGCTTGAAAACACAACAGAAGACGAAGAAATTATTCTTATTCTGGAGAGGGTTCAATCTAGAAAACCGTCATCCGCGAACTCTGAAAATCATCATCGAATTTTTCCTTCTGAACTTCAACGTGGAAAATATGTGGGAAATGGGGTTCATGGCTCAGTTATAATGTAARAAATTAGGTCAAAAGAACGGGGAAAACCTGTAAGTTAAGGGCTCGACATGAGAAATCAGATAAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1128</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>331769</contig_pos>
        <strand></strand>
        <context>AAAAGAACGG[G/A]GAAAACCTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATGGGGTTCATGGCTCAGTTATAATGTAAAAAATTAGGTCAAAAGAACGG</left_flank>
        <right_flank>GAAAACCTGTAAGTTAAGGGCTCGACATGAGAAATCAGATAAATGGTATG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTGGTCTCACTACTTTCACACAGCTGAAATTATGCTTGAATATCGTACTTTTCTAGTTTACTATCAACTGGAAGCTGACGAGCTAGCAGAACCCATAAGTGTGCAGGTTTTTTTGAAGATCTACTTTATATTATTAGAACATTAAAATTCCAGTTCCCTGGGCACATTTGGCAACATCGAGACATTTTTATGGCTGAGCTAGAATTGAAGATACCTGAAGTTTCTGAAAACTTCAAAATAAAATATAACGATGTAGATGGTGCTATTTTGAAAGTTCGGGGAGCGGATGATTTTGAAAAATTCATTAAAAGGCTTGAAAACACAACAGAAGACGAAGAAATTATTCTTATTCTGGAGAGGGTTCAATCTAGAAAACCGTCATCCGCGAACTCTGAAAATCATCATCGAATTTTTCCTTCTGAACTTCAACGTGGAAAATATGTGGGAAATGGGGTTCATGGCTCAGTTATAATGTAAAAAATTAGGTCAAAAGAACGGGGAAAACCTGTAAGTTAAGGGCTCGACATGAGAAATCAGATAAATGGTATGTGATCAAGACGATTCTATCACAAAACAATGACAAAAAGGAGTATGAGAAGGAGATTGTTGCCTATGAAGAGGTAATTGAATTGATTTGAAAATTCGTATTTAAAAAATTTGAAAATTTGAACCTAATTCTATTCAAAATCAAATAAATTTTCAGTGCTCTAAATCAGCATACGTTGTCGGCTATTATGGATGTGAAGTGAGCTCAACGAAAAAAGAGCTGGTGCTTGAGTACATGAACCGTGGAGATTTCCGTCAATTCGGTGCTCTTCCATTCCCTGTTCATCAAAGTGTTACGTTATCACTGATACGAGCGATACGTCATGTGTGGAACAGTGGACCCGGGTACATCCACAGGGATATCAAGCCTGAAAATATCCTAGTCAATTCACAAGGAGATGTGAAGATTTGTGATTTTGGTGCGGCCAAAGTGAGCTTTCCGAAATTTGAGAT</canonical>
            <polymorphic>GCTGGTCTCACTACTTTCACACAGCTGAAATTATGCTTGAATATCGTACTTTTCTAGTTTACTATCAACTGGAAGCTGACGAGCTAGCAGAACCCATAAGTGTGCAGGTTTTTTTGAAGATCTACTTTATATTATTAGAACATTAAAATTCCAGTTCCCTGGGCACATTTGGCAACATCGAGACATTTTTATGGCTGAGCTAGAATTGAAGATACCTGAAGTTTCTGAAAACTTCAAAATAAAATATAACGATGTAGATGGTGCTATTTTGAAAGTTCGGGGAGCGGATGATTTTGAAAAATTCATTAAAAGGCTTGAAAACACAACAGAAGACGAAGAAATTATTCTTATTCTGGAGAGGGTTCAATCTAGAAAACCGTCATCCGCGAACTCTGAAAATCATCATCGAATTTTTCCTTCTGAACTTCAACGTGGAAAATATGTGGGAAATGGGGTTCATGGCTCAGTTATAATGTAAAAAATTAGGTCAAAAGAACGGRGAAAACCTGTAAGTTAAGGGCTCGACATGAGAAATCAGATAAATGGTATGTGATCAAGACGATTCTATCACAAAACAATGACAAAAAGGAGTATGAGAAGGAGATTGTTGCCTATGAAGAGGTAATTGAATTGATTTGAAAATTCGTATTTAAAAAATTTGAAAATTTGAACCTAATTCTATTCAAAATCAAATAAATTTTCAGTGCTCTAAATCAGCATACGTTGTCGGCTATTATGGATGTGAAGTGAGCTCAACGAAAAAAGAGCTGGTGCTTGAGTACATGAACCGTGGAGATTTCCGTCAATTCGGTGCTCTTCCATTCCCTGTTCATCAAAGTGTTACGTTATCACTGATACGAGCGATACGTCATGTGTGGAACAGTGGACCCGGGTACATCCACAGGGATATCAAGCCTGAAAATATCCTAGTCAATTCACAAGGAGATGTGAAGATTTGTGATTTTGGTGCGGCCAAAGTGAGCTTTCCGAAATTTGAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCAATCTAGAAAACCGTCAT</pcr_primer_p1>
		<pcr_primer_p2>AACAATCTCCTTCTCATACTCCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTCAATCTAGAAAACCGTCATCCGCGAACTCTGAAAATCATCATCGAATTTTTCCTTCTGAACTTCAACGTGGAAAATATGTGGGAAATGGGGTTCATGGCTCAGTTATAATGTAAAAAATTAGGTCAAAAGAACGGGGAAAACCTGTAAGTTAAGGGCTCGACATGAGAAATCAGATAAATGGTATGTGATCAAGACGATTCTATCACAAAACAATGACAAAAAGGAGTATGAGAAGGAGATTGTT</canonical_amplicon>
		<polymorphic_amplicon>GTTCAATCTAGAAAACCGTCATCCGCGAACTCTGAAAATCATCATCGAATTTTTCCTTCTGAACTTCAACGTGGAAAATATGTGGGAAATGGGGTTCATGGCTCAGTTATAATGTAAAAAATTAGGTCAAAAGAACGGRGAAAACCTGTAAGTTAAGGGCTCGACATGAGAAATCAGATAAATGGTATGTGATCAAGACGATTCTATCACAAAACAATGACAAAAAGGAGTATGAGAAGGAGATTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1129</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>331967</contig_pos>
        <strand></strand>
        <context>ATCAAATAAA[T/A]TTTCAGTGYT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATTTAAAAAATTTGAAAATTTGAACCTAATTCTATTCAAAATCAAATAAA</left_flank>
        <right_flank>TTTCAGTGCTCTAAATCAGCATACGTTGTCGGCTATTATGGATGTGAAGT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTAGAATTGAAGATACCTGAAGTTTCTGAAAACTTCAAAATAAAATATAACGATGTAGATGGTGCTATTTTGAAAGTTCGGGGAGCGGATGATTTTGAAAAATTCATTAAAAGGCTTGAAAACACAACAGAAGACGAAGAAATTATTCTTATTCTGGAGAGGGTTCAATCTAGAAAACCGTCATCCGCGAACTCTGAAAATCATCATCGAATTTTTCCTTCTGAACTTCAACGTGGAAAATATGTGGGAAATGGGGTTCATGGCTCAGTTATAATGTAAAAAATTAGGTCAAAAGAACGGGGAAAACCTGTAAGTTAAGGGCTCGACATGAGAAATCAGATAAATGGTATGTGATCAAGACGATTCTATCACAAAACAATGACAAAAAGGAGTATGAGAAGGAGATTGTTGCCTATGAAGAGGTAATTGAATTGATTTGAAAATTCGTATTTAAAAAATTTGAAAATTTGAACCTAATTCTATTCAAAATCAAATAAATTTTCAGTGCTCTAAATCAGCATACGTTGTCGGCTATTATGGATGTGAAGTGAGCTCAACGAAAAAAGAGCTGGTGCTTGAGTACATGAACCGTGGAGATTTCCGTCAATTCGGTGCTCTTCCATTCCCTGTTCATCAAAGTGTTACGTTATCACTGATACGAGCGATACGTCATGTGTGGAACAGTGGACCCGGGTACATCCACAGGGATATCAAGCCTGAAAATATCCTAGTCAATTCACAAGGAGATGTGAAGATTTGTGATTTTGGTGCGGCCAAAGTGAGCTTTCCGAAATTTGAGATTCCCAAATTCATTGAATTTTTAGAGGATCGACAACACGTATCGAATCGCTTCTTCAGCGGCCGGAACCCAATGGTATCAGGCACCTGAGCAACTAATGGGTCAGGATTATAGGTTAGAAAATACCATTTTAGAAGTATTTTTTTTAATTTTCAGTGAAAAAGTCGACATTTGGGGTTTTGGATTAACGCTGTGGGAGC</canonical>
            <polymorphic>GCTAGAATTGAAGATACCTGAAGTTTCTGAAAACTTCAAAATAAAATATAACGATGTAGATGGTGCTATTTTGAAAGTTCGGGGAGCGGATGATTTTGAAAAATTCATTAAAAGGCTTGAAAACACAACAGAAGACGAAGAAATTATTCTTATTCTGGAGAGGGTTCAATCTAGAAAACCGTCATCCGCGAACTCTGAAAATCATCATCGAATTTTTCCTTCTGAACTTCAACGTGGAAAATATGTGGGAAATGGGGTTCATGGCTCAGTTATAATGTAAAAAATTAGGTCAAAAGAACGGGGAAAACCTGTAAGTTAAGGGCTCGACATGAGAAATCAGATAAATGGTATGTGATCAAGACGATTCTATCACAAAACAATGACAAAAAGGAGTATGAGAAGGAGATTGTTGCCTATGAAGAGGTAATTGAATTGATTTGAAAATTCGTATTTAAAAAATTTGAAAATTTGAACCTAATTCTATTCAAAATCAAATAAAWTTTCAGTGCTCTAAATCAGCATACGTTGTCGGCTATTATGGATGTGAAGTGAGCTCAACGAAAAAAGAGCTGGTGCTTGAGTACATGAACCGTGGAGATTTCCGTCAATTCGGTGCTCTTCCATTCCCTGTTCATCAAAGTGTTACGTTATCACTGATACGAGCGATACGTCATGTGTGGAACAGTGGACCCGGGTACATCCACAGGGATATCAAGCCTGAAAATATCCTAGTCAATTCACAAGGAGATGTGAAGATTTGTGATTTTGGTGCGGCCAAAGTGAGCTTTCCGAAATTTGAGATTCCCAAATTCATTGAATTTTTAGAGGATCGACAACACGTATCGAATCGCTTCTTCAGCGGCCGGAACCCAATGGTATCAGGCACCTGAGCAACTAATGGGTCAGGATTATAGGTTAGAAAATACCATTTTAGAAGTATTTTTTTTAATTTTCAGTGAAAAAGTCGACATTTGGGGTTTTGGATTAACGCTGTGGGAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>295 232 184 109 101 32 15 15 9 8</canonical_bands>
                <polymorphic_bands>327 232 184 109 101 15 15 9 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>143 131 128 109 96 72 69 58 53 40 21 15 15 12 11 9 8 5 5</canonical_bands>
                <polymorphic_bands>143 131 130 128 96 72 69 58 53 40 15 15 12 11 9 8 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGCCTATGAAGAGGTAATTG</pcr_primer_p1>
		<pcr_primer_p2>TCAGTGATAACGTAACACTTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTGCCTATGAAGAGGTAATTGAATTGATTTGAAAATTCGTATTTAAAAAATTTGAAAATTTGAACCTAATTCTATTCAAAATCAAATAAATTTTCAGTGCTCTAAATCAGCATACGTTGTCGGCTATTATGGATGTGAAGTGAGCTCAACGAAAAAAGAGCTGGTGCTTGAGTACATGAACCGTGGAGATTTCCGTCAATTCGGTGCTCTTCCATTCCCTGTTCATCAAAGTGTTACGTTATCACTGA</canonical_amplicon>
		<polymorphic_amplicon>GTTGCCTATGAAGAGGTAATTGAATTGATTTGAAAATTCGTATTTAAAAAATTTGAAAATTTGAACCTAATTCTATTCAAAATCAAATAAAWTTTCAGTGCTCTAAATCAGCATACGTTGTCGGCTATTATGGATGTGAAGTGAGCTCAACGAAAAAAGAGCTGGTGCTTGAGTACATGAACCGTGGAGATTTCCGTCAATTCGGTGCTCTTCCATTCCCTGTTCATCAAAGTGTTACGTTATCACTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1130</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>331976</contig_pos>
        <strand></strand>
        <context>AWTTTCAGTG[C/T]TCTAAATCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTGAAAATTTGAACCTAATTCTATTCAAAATCAAATAAATTTTCAGTG</left_flank>
        <right_flank>TCTAAATCAGCATACGTTGTCGGCTATTATGGATGTGAAGTGAGCTCAAC</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGATACCTGAAGTTTCTGAAAACTTCAAAATAAAATATAACGATGTAGATGGTGCTATTTTGAAAGTTCGGGGAGCGGATGATTTTGAAAAATTCATTAAAAGGCTTGAAAACACAACAGAAGACGAAGAAATTATTCTTATTCTGGAGAGGGTTCAATCTAGAAAACCGTCATCCGCGAACTCTGAAAATCATCATCGAATTTTTCCTTCTGAACTTCAACGTGGAAAATATGTGGGAAATGGGGTTCATGGCTCAGTTATAATGTAAAAAATTAGGTCAAAAGAACGGGGAAAACCTGTAAGTTAAGGGCTCGACATGAGAAATCAGATAAATGGTATGTGATCAAGACGATTCTATCACAAAACAATGACAAAAAGGAGTATGAGAAGGAGATTGTTGCCTATGAAGAGGTAATTGAATTGATTTGAAAATTCGTATTTAAAAAATTTGAAAATTTGAACCTAATTCTATTCAAAATCAAATAAATTTTCAGTGCTCTAAATCAGCATACGTTGTCGGCTATTATGGATGTGAAGTGAGCTCAACGAAAAAAGAGCTGGTGCTTGAGTACATGAACCGTGGAGATTTCCGTCAATTCGGTGCTCTTCCATTCCCTGTTCATCAAAGTGTTACGTTATCACTGATACGAGCGATACGTCATGTGTGGAACAGTGGACCCGGGTACATCCACAGGGATATCAAGCCTGAAAATATCCTAGTCAATTCACAAGGAGATGTGAAGATTTGTGATTTTGGTGCGGCCAAAGTGAGCTTTCCGAAATTTGAGATTCCCAAATTCATTGAATTTTTAGAGGATCGACAACACGTATCGAATCGCTTCTTCAGCGGCCGGAACCCAATGGTATCAGGCACCTGAGCAACTAATGGGTCAGGATTATAGGTTAGAAAATACCATTTTAGAAGTATTTTTTTTAATTTTCAGTGAAAAAGTCGACATTTGGGGTTTTGGATTAACGCTGTGGGAGCTGGCGATGG</canonical>
            <polymorphic>GAAGATACCTGAAGTTTCTGAAAACTTCAAAATAAAATATAACGATGTAGATGGTGCTATTTTGAAAGTTCGGGGAGCGGATGATTTTGAAAAATTCATTAAAAGGCTTGAAAACACAACAGAAGACGAAGAAATTATTCTTATTCTGGAGAGGGTTCAATCTAGAAAACCGTCATCCGCGAACTCTGAAAATCATCATCGAATTTTTCCTTCTGAACTTCAACGTGGAAAATATGTGGGAAATGGGGTTCATGGCTCAGTTATAATGTAAAAAATTAGGTCAAAAGAACGGGGAAAACCTGTAAGTTAAGGGCTCGACATGAGAAATCAGATAAATGGTATGTGATCAAGACGATTCTATCACAAAACAATGACAAAAAGGAGTATGAGAAGGAGATTGTTGCCTATGAAGAGGTAATTGAATTGATTTGAAAATTCGTATTTAAAAAATTTGAAAATTTGAACCTAATTCTATTCAAAATCAAATAAATTTTCAGTGYTCTAAATCAGCATACGTTGTCGGCTATTATGGATGTGAAGTGAGCTCAACGAAAAAAGAGCTGGTGCTTGAGTACATGAACCGTGGAGATTTCCGTCAATTCGGTGCTCTTCCATTCCCTGTTCATCAAAGTGTTACGTTATCACTGATACGAGCGATACGTCATGTGTGGAACAGTGGACCCGGGTACATCCACAGGGATATCAAGCCTGAAAATATCCTAGTCAATTCACAAGGAGATGTGAAGATTTGTGATTTTGGTGCGGCCAAAGTGAGCTTTCCGAAATTTGAGATTCCCAAATTCATTGAATTTTTAGAGGATCGACAACACGTATCGAATCGCTTCTTCAGCGGCCGGAACCCAATGGTATCAGGCACCTGAGCAACTAATGGGTCAGGATTATAGGTTAGAAAATACCATTTTAGAAGTATTTTTTTTAATTTTCAGTGAAAAAGTCGACATTTGGGGTTTTGGATTAACGCTGTGGGAGCTGGCGATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 392 62 45</canonical_bands>
                <polymorphic_bands>546 392 62</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>392 315 186 62 45</canonical_bands>
                <polymorphic_bands>392 315 231 62</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGCCTATGAAGAGGTAATTG</pcr_primer_p1>
		<pcr_primer_p2>TCAGTGATAACGTAACACTTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTGCCTATGAAGAGGTAATTGAATTGATTTGAAAATTCGTATTTAAAAAATTTGAAAATTTGAACCTAATTCTATTCAAAATCAAATAAATTTTCAGTGCTCTAAATCAGCATACGTTGTCGGCTATTATGGATGTGAAGTGAGCTCAACGAAAAAAGAGCTGGTGCTTGAGTACATGAACCGTGGAGATTTCCGTCAATTCGGTGCTCTTCCATTCCCTGTTCATCAAAGTGTTACGTTATCACTGA</canonical_amplicon>
		<polymorphic_amplicon>GTTGCCTATGAAGAGGTAATTGAATTGATTTGAAAATTCGTATTTAAAAAATTTGAAAATTTGAACCTAATTCTATTCAAAATCAAATAAATTTTCAGTGYTCTAAATCAGCATACGTTGTCGGCTATTATGGATGTGAAGTGAGCTCAACGAAAAAAGAGCTGGTGCTTGAGTACATGAACCGTGGAGATTTCCGTCAATTCGGTGCTCTTCCATTCCCTGTTCATCAAAGTGTTACGTTATCACTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1131</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>335547</contig_pos>
        <strand></strand>
        <context>TACTAATTTA[T/C]TGATGAATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACCAAATGAGTACAATCCAGAAGTATGAGGATCTCCTATTTACTAATTTA</left_flank>
        <right_flank>TGATGAATTCCTCTCCATACCCATGTTTTTTATTCTTTTTAAATTTGTCT</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCACATGGTCAGGCTTTTCTTCTATTTTCCACGTCTTCTAATTTTATCTTTAGGTCTTCTACCCCACAGTTGAGCAGGCGAAAGCGGAGACGGCGCATTTGGAAGATCCCTATTATCAACAAAAAAAAATGAACTACCAAGTGATTTATAGTCAACCAGCAGCAGAAAGTCAACAATACTATACGCAGCAAAGAGAGGAAGCCAGTGATTATCAGCCAGGTAGATCATTGATTATATTGCGATAGGTACACAAATGAATAATATTCAGAAGACTCCTCAACTGCTCAGTATCAAGAGTACAACCCGTATGCAAAACCACGTACTCCACCACAAGAAGAGGAAGATATTGGAGATTATGTTTATAACACCACTGTGCCGGTGGAGCAAAATGGTTTGGAAGATTCTTCTGGAAAGTAATTGAGGAAATTATTTCAGGAGCATCCCCACAACCAAATGAGTACAATCCAGAAGTATGAGGATCTCCTATTTACTAATTTATTGATGAATTCCTCTCCATACCCATGTTTTTTATTCTTTTTAAATTTGTCTCGTTTTTCCATTATCAACGGTAGAAAACAGTTTATTTTGCGTTGTTGCTTGTGTTCACTCTCTTCTTCTACAAAATAAACTTTTCGAGACTCAATAAAAGGCGATCGAGATTGTGCTGATTTTTGTATTTGACTTGGTGTGGGGTGTTGATGGGGAGAACTTGAAATATATCAGAGCAAAGGGGGAAAAGCCGGGAAAGGAGAAAAAACGGAGAGAGGGAAACCGTTGAAAATGTGTGGAGACAAATTGTTTGGTGTTTACCGGGAAAAGAAGGAAATAGAAGAAGCAGAAAAGAAAATTTAGATAAATCTCAATCGTCGGGAGGCTCTCTCGTTGAGAATCGTTGCAATTTCAGCTATCCTTTGACGGAGTTCCAGCTCGTCTTGTTCCTCAGCAGCGGCTTCTAGAAGAGCTTCTTCTGGGACGAAGATTAGCTGCAAAAATTGATTT</canonical>
            <polymorphic>AGCACATGGTCAGGCTTTTCTTCTATTTTCCACGTCTTCTAATTTTATCTTTAGGTCTTCTACCCCACAGTTGAGCAGGCGAAAGCGGAGACGGCGCATTTGGAAGATCCCTATTATCAACAAAAAAAAATGAACTACCAAGTGATTTATAGTCAACCAGCAGCAGAAAGTCAACAATACTATACGCAGCAAAGAGAGGAAGCCAGTGATTATCAGCCAGGTAGATCATTGATTATATTGCGATAGGTACACAAATGAATAATATTCAGAAGACTCCTCAACTGCTCAGTATCAAGAGTACAACCCGTATGCAAAACCACGTACTCCACCACAAGAAGAGGAAGATATTGGAGATTATGTTTATAACACCACTGTGCCGGTGGAGCAAAATGGTTTGGAAGATTCTTCTGGAAAGTAATTGAGGAAATTATTTCAGGAGCATCCCCACAACCAAATGAGTACAATCCAGAAGTATGAGGATCTCCTATTTACTAATTTAYTGATGAATTCCTCTCCATACCCATGTTTTTTATTCTTTTTAAATTTGTCTCGTTTTTCCATTATCAACGGTAGAAAACAGTTTATTTTGCGTTGTTGCTTGTGTTCACTCTCTTCTTCTACAAAATAAACTTTTCGAGACTCAATAAAAGGCGATCGAGATTGTGCTGATTTTTGTATTTGACTTGGTGTGGGGTGTTGATGGGGAGAACTTGAAATATATCAGAGCAAAGGGGGAAAAGCCGGGAAAGGAGAAAAAACGGAGAGAGGGAAACCGTTGAAAATGTGTGGAGACAAATTGTTTGGTGTTTACCGGGAAAAGAAGGAAATAGAAGAAGCAGAAAAGAAAATTTAGATAAATCTCAATCGTCGGGAGGCTCTCTCGTTGAGAATCGTTGCAATTTCAGCTATCCTTTGACGGAGTTCCAGCTCGTCTTGTTCCTCAGCAGCGGCTTCTAGAAGAGCTTCTTCTGGGACGAAGATTAGCTGCAAAAATTGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAGAGGAAGATATTGGAGAT</pcr_primer_p1>
		<pcr_primer_p2>ACTGTTTTCTACCGTTGATAATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGAAGAGGAAGATATTGGAGATTATGTTTATAACACCACTGTGCCGGTGGAGCAAAATGGTTTGGAAGATTCTTCTGGAAAGTAATTGAGGAAATTATTTCAGGAGCATCCCCACAACCAAATGAGTACAATCCAGAAGTATGAGGATCTCCTATTTACTAATTTATTGATGAATTCCTCTCCATACCCATGTTTTTTATTCTTTTTAAATTTGTCTCGTTTTTCCATTATCAACGGTAGAAAACAGT</canonical_amplicon>
		<polymorphic_amplicon>AAGAAGAGGAAGATATTGGAGATTATGTTTATAACACCACTGTGCCGGTGGAGCAAAATGGTTTGGAAGATTCTTCTGGAAAGTAATTGAGGAAATTATTTCAGGAGCATCCCCACAACCAAATGAGTACAATCCAGAAGTATGAGGATCTCCTATTTACTAATTTAYTGATGAATTCCTCTCCATACCCATGTTTTTTATTCTTTTTAAATTTGTCTCGTTTTTCCATTATCAACGGTAGAAAACAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1132</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>335429</contig_pos>
        <strand></strand>
        <context>CTGYGCCRGT[G/A]GAGCAAAATG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAAGAAGAGGAAGATATTGGAGATTATGTTTATAACACCACTGTGCCGGT</left_flank>
        <right_flank>GAGCAAAATGGTTTGGAAGATTCTTCTGGAAAGTAATTGAGGAAATTATT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTAGTGACCCCTATGAGTGTATGCCCCCTTTGAGCACGATGCCCCCTGGGGTATCCGTTGGCGATGAAGGAATGTTGCAGATTTTCAATATTCCTGGAGTTGGAGAAGGAAGCCTTCAGCACATGGTCAGGCTTTTCTTCTATTTTCCACGTCTTCTAATTTTATCTTTAGGTCTTCTACCCCACAGTTGAGCAGGCGAAAGCGGAGACGGCGCATTTGGAAGATCCCTATTATCAACAAAAAAAAATGAACTACCAAGTGATTTATAGTCAACCAGCAGCAGAAAGTCAACAATACTATACGCAGCAAAGAGAGGAAGCCAGTGATTATCAGCCAGGTAGATCATTGATTATATTGCGATAGGTACACAAATGAATAATATTCAGAAGACTCCTCAACTGCTCAGTATCAAGAGTACAACCCGTATGCAAAACCACGTACTCCACCACAAGAAGAGGAAGATATTGGAGATTATGTTTATAACACCACTGTGCCGGTGGAGCAAAATGGTTTGGAAGATTCTTCTGGAAAGTAATTGAGGAAATTATTTCAGGAGCATCCCCACAACCAAATGAGTACAATCCAGAAGTATGAGGATCTCCTATTTACTAATTTATTGATGAATTCCTCTCCATACCCATGTTTTTTATTCTTTTTAAATTTGTCTCGTTTTTCCATTATCAACGGTAGAAAACAGTTTATTTTGCGTTGTTGCTTGTGTTCACTCTCTTCTTCTACAAAATAAACTTTTCGAGACTCAATAAAAGGCGATCGAGATTGTGCTGATTTTTGTATTTGACTTGGTGTGGGGTGTTGATGGGGAGAACTTGAAATATATCAGAGCAAAGGGGGAAAAGCCGGGAAAGGAGAAAAAACGGAGAGAGGGAAACCGTTGAAAATGTGTGGAGACAAATTGTTTGGTGTTTACCGGGAAAAGAAGGAAATAGAAGAAGCAGAAAAGAAAATTTAGATAAATCTCAATCGTCGGGAGGCTCTCTC</canonical>
            <polymorphic>GTTAGTGACCCCTATGAGTGTATGCCCCCTTTGAGCACGATGCCCCCTGGGGTATCCGTTGGCGATGAAGGAATGTTGCAGATTTTCAATATTCCTGGAGTTGGAGAAGGAAGCCTTCAGCACATGGTCAGGCTTTTCTTCTATTTTCCACGTCTTCTAATTTTATCTTTAGGTCTTCTACCCCACAGTTGAGCAGGCGAAAGCGGAGACGGCGCATTTGGAAGATCCCTATTATCAACAAAAAAAAATGAACTACCAAGTGATTTATAGTCAACCAGCAGCAGAAAGTCAACAATACTATACGCAGCAAAGAGAGGAAGCCAGTGATTATCAGCCAGGTAGATCATTGATTATATTGCGATAGGTACACAAATGAATAATATTCAGAAGACTCCTCAACTGCTCAGTATCAAGAGTACAACCCGTATGCAAAACCACGTACTCCACCACAAGAAGAGGAAGATATTGGAGATTATGTTTATAACACCACTGTGCCGGTRGAGCAAAATGGTTTGGAAGATTCTTCTGGAAAGTAATTGAGGAAATTATTTCAGGAGCATCCCCACAACCAAATGAGTACAATCCAGAAGTATGAGGATCTCCTATTTACTAATTTATTGATGAATTCCTCTCCATACCCATGTTTTTTATTCTTTTTAAATTTGTCTCGTTTTTCCATTATCAACGGTAGAAAACAGTTTATTTTGCGTTGTTGCTTGTGTTCACTCTCTTCTTCTACAAAATAAACTTTTCGAGACTCAATAAAAGGCGATCGAGATTGTGCTGATTTTTGTATTTGACTTGGTGTGGGGTGTTGATGGGGAGAACTTGAAATATATCAGAGCAAAGGGGGAAAAGCCGGGAAAGGAGAAAAAACGGAGAGAGGGAAACCGTTGAAAATGTGTGGAGACAAATTGTTTGGTGTTTACCGGGAAAAGAAGGAAATAGAAGAAGCAGAAAAGAAAATTTAGATAAATCTCAATCGTCGGGAGGCTCTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>156 90 85 77 76 68 65 64 58 43 37 35 28 24 18 17 13 9 7 6 5 5 4 3 3 2 2</canonical_bands>
                <polymorphic_bands>156 90 85 77 76 71 68 64 58 43 37 35 28 24 18 17 13 9 7 5 5 4 3 3 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>CCANNNNNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>XcmI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATATTGCGATAGGTACACAAA</pcr_primer_p1>
		<pcr_primer_p2>GATCCTCATACTTCTGGATTGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTATATTGCGATAGGTACACAAATGAATAATATTCAGAAGACTCCTCAACTGCTCAGTATCAAGAGTACAACCCGTATGCAAAACCACGTACTCCACCACAAGAAGAGGAAGATATTGGAGATTATGTTTATAACACCACTGTGCCGGTGGAGCAAAATGGTTTGGAAGATTCTTCTGGAAAGTAATTGAGGAAATTATTTCAGGAGCATCCCCACAACCAAATGAGTACAATCCAGAAGTATGAGGATC</canonical_amplicon>
		<polymorphic_amplicon>TTATATTGCGATAGGTACACAAATGAATAATATTCAGAAGACTCCTCAACTGCTCAGTATCAAGAGTACAACCCGTATGCAAAACCACGTACTCCACCACAAGAAGAGGAAGATATTGGAGATTATGTTTATAACACCACTGTGCCGGTRGAGCAAAATGGTTTGGAAGATTCTTCTGGAAAGTAATTGAGGAAATTATTTCAGGAGCATCCCCACAACCAAATGAGTACAATCCAGAAGTATGAGGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1133</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>335426</contig_pos>
        <strand></strand>
        <context>CCACTGYGCC[G/A]GTRGAGCAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CCACAAGAAGAGGAAGATATTGGAGATTATGTTTATAACACCACTGTGCC</left_flank>
        <right_flank>GTGGAGCAAAATGGTTTGGAAGATTCTTCTGGAAAGTAATTGAGGAAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGTTAGTGACCCCTATGAGTGTATGCCCCCTTTGAGCACGATGCCCCCTGGGGTATCCGTTGGCGATGAAGGAATGTTGCAGATTTTCAATATTCCTGGAGTTGGAGAAGGAAGCCTTCAGCACATGGTCAGGCTTTTCTTCTATTTTCCACGTCTTCTAATTTTATCTTTAGGTCTTCTACCCCACAGTTGAGCAGGCGAAAGCGGAGACGGCGCATTTGGAAGATCCCTATTATCAACAAAAAAAAATGAACTACCAAGTGATTTATAGTCAACCAGCAGCAGAAAGTCAACAATACTATACGCAGCAAAGAGAGGAAGCCAGTGATTATCAGCCAGGTAGATCATTGATTATATTGCGATAGGTACACAAATGAATAATATTCAGAAGACTCCTCAACTGCTCAGTATCAAGAGTACAACCCGTATGCAAAACCACGTACTCCACCACAAGAAGAGGAAGATATTGGAGATTATGTTTATAACACCACTGTGCCGGTGGAGCAAAATGGTTTGGAAGATTCTTCTGGAAAGTAATTGAGGAAATTATTTCAGGAGCATCCCCACAACCAAATGAGTACAATCCAGAAGTATGAGGATCTCCTATTTACTAATTTATTGATGAATTCCTCTCCATACCCATGTTTTTTATTCTTTTTAAATTTGTCTCGTTTTTCCATTATCAACGGTAGAAAACAGTTTATTTTGCGTTGTTGCTTGTGTTCACTCTCTTCTTCTACAAAATAAACTTTTCGAGACTCAATAAAAGGCGATCGAGATTGTGCTGATTTTTGTATTTGACTTGGTGTGGGGTGTTGATGGGGAGAACTTGAAATATATCAGAGCAAAGGGGGAAAAGCCGGGAAAGGAGAAAAAACGGAGAGAGGGAAACCGTTGAAAATGTGTGGAGACAAATTGTTTGGTGTTTACCGGGAAAAGAAGGAAATAGAAGAAGCAGAAAAGAAAATTTAGATAAATCTCAATCGTCGGGAGGCTCT</canonical>
            <polymorphic>TGAGTTAGTGACCCCTATGAGTGTATGCCCCCTTTGAGCACGATGCCCCCTGGGGTATCCGTTGGCGATGAAGGAATGTTGCAGATTTTCAATATTCCTGGAGTTGGAGAAGGAAGCCTTCAGCACATGGTCAGGCTTTTCTTCTATTTTCCACGTCTTCTAATTTTATCTTTAGGTCTTCTACCCCACAGTTGAGCAGGCGAAAGCGGAGACGGCGCATTTGGAAGATCCCTATTATCAACAAAAAAAAATGAACTACCAAGTGATTTATAGTCAACCAGCAGCAGAAAGTCAACAATACTATACGCAGCAAAGAGAGGAAGCCAGTGATTATCAGCCAGGTAGATCATTGATTATATTGCGATAGGTACACAAATGAATAATATTCAGAAGACTCCTCAACTGCTCAGTATCAAGAGTACAACCCGTATGCAAAACCACGTACTCCACCACAAGAAGAGGAAGATATTGGAGATTATGTTTATAACACCACTGTGCCRGTGGAGCAAAATGGTTTGGAAGATTCTTCTGGAAAGTAATTGAGGAAATTATTTCAGGAGCATCCCCACAACCAAATGAGTACAATCCAGAAGTATGAGGATCTCCTATTTACTAATTTATTGATGAATTCCTCTCCATACCCATGTTTTTTATTCTTTTTAAATTTGTCTCGTTTTTCCATTATCAACGGTAGAAAACAGTTTATTTTGCGTTGTTGCTTGTGTTCACTCTCTTCTTCTACAAAATAAACTTTTCGAGACTCAATAAAAGGCGATCGAGATTGTGCTGATTTTTGTATTTGACTTGGTGTGGGGTGTTGATGGGGAGAACTTGAAATATATCAGAGCAAAGGGGGAAAAGCCGGGAAAGGAGAAAAAACGGAGAGAGGGAAACCGTTGAAAATGTGTGGAGACAAATTGTTTGGTGTTTACCGGGAAAAGAAGGAAATAGAAGAAGCAGAAAAGAAAATTTAGATAAATCTCAATCGTCGGGAGGCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>498 364 70 68</canonical_bands>
                <polymorphic_bands>862 70 68</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATATTGCGATAGGTACACAAA</pcr_primer_p1>
		<pcr_primer_p2>GATCCTCATACTTCTGGATTGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTATATTGCGATAGGTACACAAATGAATAATATTCAGAAGACTCCTCAACTGCTCAGTATCAAGAGTACAACCCGTATGCAAAACCACGTACTCCACCACAAGAAGAGGAAGATATTGGAGATTATGTTTATAACACCACTGTGCCGGTGGAGCAAAATGGTTTGGAAGATTCTTCTGGAAAGTAATTGAGGAAATTATTTCAGGAGCATCCCCACAACCAAATGAGTACAATCCAGAAGTATGAGGATC</canonical_amplicon>
		<polymorphic_amplicon>TTATATTGCGATAGGTACACAAATGAATAATATTCAGAAGACTCCTCAACTGCTCAGTATCAAGAGTACAACCCGTATGCAAAACCACGTACTCCACCACAAGAAGAGGAAGATATTGGAGATTATGTTTATAACACCACTGTGCCRGTGGAGCAAAATGGTTTGGAAGATTCTTCTGGAAAGTAATTGAGGAAATTATTTCAGGAGCATCCCCACAACCAAATGAGTACAATCCAGAAGTATGAGGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1134</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>335422</contig_pos>
        <strand></strand>
        <context>AACACCACTG[T/C]GCCRGTRGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCCACCACAAGAAGAGGAAGATATTGGAGATTATGTTTATAACACCACTG</left_flank>
        <right_flank>GCCGGTGGAGCAAAATGGTTTGGAAGATTCTTCTGGAAAGTAATTGAGGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTATGAGTTAGTGACCCCTATGAGTGTATGCCCCCTTTGAGCACGATGCCCCCTGGGGTATCCGTTGGCGATGAAGGAATGTTGCAGATTTTCAATATTCCTGGAGTTGGAGAAGGAAGCCTTCAGCACATGGTCAGGCTTTTCTTCTATTTTCCACGTCTTCTAATTTTATCTTTAGGTCTTCTACCCCACAGTTGAGCAGGCGAAAGCGGAGACGGCGCATTTGGAAGATCCCTATTATCAACAAAAAAAAATGAACTACCAAGTGATTTATAGTCAACCAGCAGCAGAAAGTCAACAATACTATACGCAGCAAAGAGAGGAAGCCAGTGATTATCAGCCAGGTAGATCATTGATTATATTGCGATAGGTACACAAATGAATAATATTCAGAAGACTCCTCAACTGCTCAGTATCAAGAGTACAACCCGTATGCAAAACCACGTACTCCACCACAAGAAGAGGAAGATATTGGAGATTATGTTTATAACACCACTGTGCCGGTGGAGCAAAATGGTTTGGAAGATTCTTCTGGAAAGTAATTGAGGAAATTATTTCAGGAGCATCCCCACAACCAAATGAGTACAATCCAGAAGTATGAGGATCTCCTATTTACTAATTTATTGATGAATTCCTCTCCATACCCATGTTTTTTATTCTTTTTAAATTTGTCTCGTTTTTCCATTATCAACGGTAGAAAACAGTTTATTTTGCGTTGTTGCTTGTGTTCACTCTCTTCTTCTACAAAATAAACTTTTCGAGACTCAATAAAAGGCGATCGAGATTGTGCTGATTTTTGTATTTGACTTGGTGTGGGGTGTTGATGGGGAGAACTTGAAATATATCAGAGCAAAGGGGGAAAAGCCGGGAAAGGAGAAAAAACGGAGAGAGGGAAACCGTTGAAAATGTGTGGAGACAAATTGTTTGGTGTTTACCGGGAAAAGAAGGAAATAGAAGAAGCAGAAAAGAAAATTTAGATAAATCTCAATCGTCGGGAGG</canonical>
            <polymorphic>TCTATGAGTTAGTGACCCCTATGAGTGTATGCCCCCTTTGAGCACGATGCCCCCTGGGGTATCCGTTGGCGATGAAGGAATGTTGCAGATTTTCAATATTCCTGGAGTTGGAGAAGGAAGCCTTCAGCACATGGTCAGGCTTTTCTTCTATTTTCCACGTCTTCTAATTTTATCTTTAGGTCTTCTACCCCACAGTTGAGCAGGCGAAAGCGGAGACGGCGCATTTGGAAGATCCCTATTATCAACAAAAAAAAATGAACTACCAAGTGATTTATAGTCAACCAGCAGCAGAAAGTCAACAATACTATACGCAGCAAAGAGAGGAAGCCAGTGATTATCAGCCAGGTAGATCATTGATTATATTGCGATAGGTACACAAATGAATAATATTCAGAAGACTCCTCAACTGCTCAGTATCAAGAGTACAACCCGTATGCAAAACCACGTACTCCACCACAAGAAGAGGAAGATATTGGAGATTATGTTTATAACACCACTGYGCCGGTGGAGCAAAATGGTTTGGAAGATTCTTCTGGAAAGTAATTGAGGAAATTATTTCAGGAGCATCCCCACAACCAAATGAGTACAATCCAGAAGTATGAGGATCTCCTATTTACTAATTTATTGATGAATTCCTCTCCATACCCATGTTTTTTATTCTTTTTAAATTTGTCTCGTTTTTCCATTATCAACGGTAGAAAACAGTTTATTTTGCGTTGTTGCTTGTGTTCACTCTCTTCTTCTACAAAATAAACTTTTCGAGACTCAATAAAAGGCGATCGAGATTGTGCTGATTTTTGTATTTGACTTGGTGTGGGGTGTTGATGGGGAGAACTTGAAATATATCAGAGCAAAGGGGGAAAAGCCGGGAAAGGAGAAAAAACGGAGAGAGGGAAACCGTTGAAAATGTGTGGAGACAAATTGTTTGGTGTTTACCGGGAAAAGAAGGAAATAGAAGAAGCAGAAAAGAAAATTTAGATAAATCTCAATCGTCGGGAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACNNNNGTG</site>
                <isoschizomers>
                    <enzyme>AleI</enzyme>
                    <enzyme>OliI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>304 196 195 194 101 10</canonical_bands>
                <polymorphic_bands>500 195 194 101 10</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>156 90 85 77 69 68 65 64 58 43 37 35 28 24 18 17 14 13 9 6 5 5 4 3 3 2 2</canonical_bands>
                <polymorphic_bands>156 90 85 77 69 68 65 64 58 43 37 35 28 24 18 17 14 13 11 9 5 4 3 3 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>496 355 149</canonical_bands>
                <polymorphic_bands>645 355</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATATTGCGATAGGTACACAAA</pcr_primer_p1>
		<pcr_primer_p2>GATCCTCATACTTCTGGATTGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTATATTGCGATAGGTACACAAATGAATAATATTCAGAAGACTCCTCAACTGCTCAGTATCAAGAGTACAACCCGTATGCAAAACCACGTACTCCACCACAAGAAGAGGAAGATATTGGAGATTATGTTTATAACACCACTGTGCCGGTGGAGCAAAATGGTTTGGAAGATTCTTCTGGAAAGTAATTGAGGAAATTATTTCAGGAGCATCCCCACAACCAAATGAGTACAATCCAGAAGTATGAGGATC</canonical_amplicon>
		<polymorphic_amplicon>TTATATTGCGATAGGTACACAAATGAATAATATTCAGAAGACTCCTCAACTGCTCAGTATCAAGAGTACAACCCGTATGCAAAACCACGTACTCCACCACAAGAAGAGGAAGATATTGGAGATTATGTTTATAACACCACTGYGCCGGTGGAGCAAAATGGTTTGGAAGATTCTTCTGGAAAGTAATTGAGGAAATTATTTCAGGAGCATCCCCACAACCAAATGAGTACAATCCAGAAGTATGAGGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1135</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>335278</contig_pos>
        <strand></strand>
        <context>GTAGATCATT[G/C]ATTATATTGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TATACGCAGCAAAGAGAGGAAGCCAGTGATTATCAGCCAGGTAGATCATT</left_flank>
        <right_flank>ATTATATTGCGATAGGTACACAAATGAATAATATTCAGAAGACTCCTCAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATTCATCATGTTCAGAATCATATACTCAAATTGGTCTCAATGACCCCTATGAGACTATCAATGCCGCCTGGGAGCATTTGGTCCGATGCCCCCTATGAGACATGGTGGGATGCCCCCTAAGAGACAACTTCAGGATGCCCTCTATGAGTTAGTGACCCCTATGAGTGTATGCCCCCTTTGAGCACGATGCCCCCTGGGGTATCCGTTGGCGATGAAGGAATGTTGCAGATTTTCAATATTCCTGGAGTTGGAGAAGGAAGCCTTCAGCACATGGTCAGGCTTTTCTTCTATTTTCCACGTCTTCTAATTTTATCTTTAGGTCTTCTACCCCACAGTTGAGCAGGCGAAAGCGGAGACGGCGCATTTGGAAGATCCCTATTATCAACAAAAAAAAATGAACTACCAAGTGATTTATAGTCAACCAGCAGCAGAAAGTCAACAATACTATACGCAGCAAAGAGAGGAAGCCAGTGATTATCAGCCAGGTAGATCATTGATTATATTGCGATAGGTACACAAATGAATAATATTCAGAAGACTCCTCAACTGCTCAGTATCAAGAGTACAACCCGTATGCAAAACCACGTACTCCACCACAAGAAGAGGAAGATATTGGAGATTATGTTTATAACACCACTGTGCCGGTGGAGCAAAATGGTTTGGAAGATTCTTCTGGAAAGTAATTGAGGAAATTATTTCAGGAGCATCCCCACAACCAAATGAGTACAATCCAGAAGTATGAGGATCTCCTATTTACTAATTTATTGATGAATTCCTCTCCATACCCATGTTTTTTATTCTTTTTAAATTTGTCTCGTTTTTCCATTATCAACGGTAGAAAACAGTTTATTTTGCGTTGTTGCTTGTGTTCACTCTCTTCTTCTACAAAATAAACTTTTCGAGACTCAATAAAAGGCGATCGAGATTGTGCTGATTTTTGTATTTGACTTGGTGTGGGGTGTTGATGGGGAGAACTTGAAATATATCAGAGCAAAG</canonical>
            <polymorphic>AAAAATTCATCATGTTCAGAATCATATACTCAAATTGGTCTCAATGACCCCTATGAGACTATCAATGCCGCCTGGGAGCATTTGGTCCGATGCCCCCTATGAGACATGGTGGGATGCCCCCTAAGAGACAACTTCAGGATGCCCTCTATGAGTTAGTGACCCCTATGAGTGTATGCCCCCTTTGAGCACGATGCCCCCTGGGGTATCCGTTGGCGATGAAGGAATGTTGCAGATTTTCAATATTCCTGGAGTTGGAGAAGGAAGCCTTCAGCACATGGTCAGGCTTTTCTTCTATTTTCCACGTCTTCTAATTTTATCTTTAGGTCTTCTACCCCACAGTTGAGCAGGCGAAAGCGGAGACGGCGCATTTGGAAGATCCCTATTATCAACAAAAAAAAATGAACTACCAAGTGATTTATAGTCAACCAGCAGCAGAAAGTCAACAATACTATACGCAGCAAAGAGAGGAAGCCAGTGATTATCAGCCAGGTAGATCATTSATTATATTGCGATAGGTACACAAATGAATAATATTCAGAAGACTCCTCAACTGCTCAGTATCAAGAGTACAACCCGTATGCAAAACCACGTACTCCACCACAAGAAGAGGAAGATATTGGAGATTATGTTTATAACACCACTGTGCCGGTGGAGCAAAATGGTTTGGAAGATTCTTCTGGAAAGTAATTGAGGAAATTATTTCAGGAGCATCCCCACAACCAAATGAGTACAATCCAGAAGTATGAGGATCTCCTATTTACTAATTTATTGATGAATTCCTCTCCATACCCATGTTTTTTATTCTTTTTAAATTTGTCTCGTTTTTCCATTATCAACGGTAGAAAACAGTTTATTTTGCGTTGTTGCTTGTGTTCACTCTCTTCTTCTACAAAATAAACTTTTCGAGACTCAATAAAAGGCGATCGAGATTGTGCTGATTTTTGTATTTGACTTGGTGTGGGGTGTTGATGGGGAGAACTTGAAATATATCAGAGCAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATACTATACGCAGCAAAGAGAG</pcr_primer_p1>
		<pcr_primer_p2>CCTCAATTACTTTCCAGAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATACTATACGCAGCAAAGAGAGGAAGCCAGTGATTATCAGCCAGGTAGATCATTGATTATATTGCGATAGGTACACAAATGAATAATATTCAGAAGACTCCTCAACTGCTCAGTATCAAGAGTACAACCCGTATGCAAAACCACGTACTCCACCACAAGAAGAGGAAGATATTGGAGATTATGTTTATAACACCACTGTGCCGGTGGAGCAAAATGGTTTGGAAGATTCTTCTGGAAAGTAATTGAGG</canonical_amplicon>
		<polymorphic_amplicon>AATACTATACGCAGCAAAGAGAGGAAGCCAGTGATTATCAGCCAGGTAGATCATTSATTATATTGCGATAGGTACACAAATGAATAATATTCAGAAGACTCCTCAACTGCTCAGTATCAAGAGTACAACCCGTATGCAAAACCACGTACTCCACCACAAGAAGAGGAAGATATTGGAGATTATGTTTATAACACCACTGTGCCGGTGGAGCAAAATGGTTTGGAAGATTCTTCTGGAAAGTAATTGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1136</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>335183</contig_pos>
        <strand></strand>
        <context>AAAAATGAAC[T/C]ACCAAGTGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CGGAGACGGCGCATTTGGAAGATCCCTATTATCAACAAAAAAAAATGAAC</left_flank>
        <right_flank>ACCAAGTGATTTATAGTCAACCAGCAGCAGAAAGTCAACAATACTATACG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAATTCTACTCAGTTGACCCTCCGAAATAACACCTTCAATAGTCTGCAATTGTGTTTGTTTTCATCAAAAAACTACGAAAAAGATGTAAAAACAAAAATTCATCATGTTCAGAATCATATACTCAAATTGGTCTCAATGACCCCTATGAGACTATCAATGCCGCCTGGGAGCATTTGGTCCGATGCCCCCTATGAGACATGGTGGGATGCCCCCTAAGAGACAACTTCAGGATGCCCTCTATGAGTTAGTGACCCCTATGAGTGTATGCCCCCTTTGAGCACGATGCCCCCTGGGGTATCCGTTGGCGATGAAGGAATGTTGCAGATTTTCAATATTCCTGGAGTTGGAGAAGGAAGCCTTCAGCACATGGTCAGGCTTTTCTTCTATTTTCCACGTCTTCTAATTTTATCTTTAGGTCTTCTACCCCACAGTTGAGCAGGCGAAAGCGGAGACGGCGCATTTGGAAGATCCCTATTATCAACAAAAAAAAATGAACTACCAAGTGATTTATAGTCAACCAGCAGCAGAAAGTCAACAATACTATACGCAGCAAAGAGAGGAAGCCAGTGATTATCAGCCAGGTAGATCATTGATTATATTGCGATAGGTACACAAATGAATAATATTCAGAAGACTCCTCAACTGCTCAGTATCAAGAGTACAACCCGTATGCAAAACCACGTACTCCACCACAAGAAGAGGAAGATATTGGAGATTATGTTTATAACACCACTGTGCCGGTGGAGCAAAATGGTTTGGAAGATTCTTCTGGAAAGTAATTGAGGAAATTATTTCAGGAGCATCCCCACAACCAAATGAGTACAATCCAGAAGTATGAGGATCTCCTATTTACTAATTTATTGATGAATTCCTCTCCATACCCATGTTTTTTATTCTTTTTAAATTTGTCTCGTTTTTCCATTATCAACGGTAGAAAACAGTTTATTTTGCGTTGTTGCTTGTGTTCACTCTCTTCTTCTACAAAATAAACTTTTCG</canonical>
            <polymorphic>AGAAATTCTACTCAGTTGACCCTCCGAAATAACACCTTCAATAGTCTGCAATTGTGTTTGTTTTCATCAAAAAACTACGAAAAAGATGTAAAAACAAAAATTCATCATGTTCAGAATCATATACTCAAATTGGTCTCAATGACCCCTATGAGACTATCAATGCCGCCTGGGAGCATTTGGTCCGATGCCCCCTATGAGACATGGTGGGATGCCCCCTAAGAGACAACTTCAGGATGCCCTCTATGAGTTAGTGACCCCTATGAGTGTATGCCCCCTTTGAGCACGATGCCCCCTGGGGTATCCGTTGGCGATGAAGGAATGTTGCAGATTTTCAATATTCCTGGAGTTGGAGAAGGAAGCCTTCAGCACATGGTCAGGCTTTTCTTCTATTTTCCACGTCTTCTAATTTTATCTTTAGGTCTTCTACCCCACAGTTGAGCAGGCGAAAGCGGAGACGGCGCATTTGGAAGATCCCTATTATCAACAAAAAAAAATGAACYACCAAGTGATTTATAGTCAACCAGCAGCAGAAAGTCAACAATACTATACGCAGCAAAGAGAGGAAGCCAGTGATTATCAGCCAGGTAGATCATTGATTATATTGCGATAGGTACACAAATGAATAATATTCAGAAGACTCCTCAACTGCTCAGTATCAAGAGTACAACCCGTATGCAAAACCACGTACTCCACCACAAGAAGAGGAAGATATTGGAGATTATGTTTATAACACCACTGTGCCGGTGGAGCAAAATGGTTTGGAAGATTCTTCTGGAAAGTAATTGAGGAAATTATTTCAGGAGCATCCCCACAACCAAATGAGTACAATCCAGAAGTATGAGGATCTCCTATTTACTAATTTATTGATGAATTCCTCTCCATACCCATGTTTTTTATTCTTTTTAAATTTGTCTCGTTTTTCCATTATCAACGGTAGAAAACAGTTTATTTTGCGTTGTTGCTTGTGTTCACTCTCTTCTTCTACAAAATAAACTTTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGGTCTTCTACCCCACAGTT</pcr_primer_p1>
		<pcr_primer_p2>ACTCTTGATACTGAGCAGTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TAGGTCTTCTACCCCACAGTTGAGCAGGCGAAAGCGGAGACGGCGCATTTGGAAGATCCCTATTATCAACAAAAAAAAATGAACTACCAAGTGATTTATAGTCAACCAGCAGCAGAAAGTCAACAATACTATACGCAGCAAAGAGAGGAAGCCAGTGATTATCAGCCAGGTAGATCATTGATTATATTGCGATAGGTACACAAATGAATAATATTCAGAAGACTCCTCAACTGCTCAGTATCAAGAGT</canonical_amplicon>
		<polymorphic_amplicon>TAGGTCTTCTACCCCACAGTTGAGCAGGCGAAAGCGGAGACGGCGCATTTGGAAGATCCCTATTATCAACAAAAAAAAATGAACYACCAAGTGATTTATAGTCAACCAGCAGCAGAAAGTCAACAATACTATACGCAGCAAAGAGAGGAAGCCAGTGATTATCAGCCAGGTAGATCATTGATTATATTGCGATAGGTACACAAATGAATAATATTCAGAAGACTCCTCAACTGCTCAGTATCAAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1139</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>335060</contig_pos>
        <strand></strand>
        <context>CACATGGTCA[G/A]GCTTTTCTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GATTTTCAATATTCCTGGAGTTGGAGAAGGAAGCCTTCAGCACATGGTCA</left_flank>
        <right_flank>GCTTTTCTTCTATTTTCCACGTCTTCTAATTTTATCTTTAGGTCTTCTAC</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAATTCTGAGATTTTCAAGCTCTGAAATTCAGGAATTCAGAAACTCCCTCAAAAAAAACTGTACCCCCGAATCACAAACGTTGTACCCCTGAATGAAATGAGTTGTACCCCGAATTTTTGGCAGAAATTCTACTCAGTTGACCCTCCGAAATAACACCTTCAATAGTCTGCAATTGTGTTTGTTTTCATCAAAAAACTACGAAAAAGATGTAAAAACAAAAATTCATCATGTTCAGAATCATATACTCAAATTGGTCTCAATGACCCCTATGAGACTATCAATGCCGCCTGGGAGCATTTGGTCCGATGCCCCCTATGAGACATGGTGGGATGCCCCCTAAGAGACAACTTCAGGATGCCCTCTATGAGTTAGTGACCCCTATGAGTGTATGCCCCCTTTGAGCACGATGCCCCCTGGGGTATCCGTTGGCGATGAAGGAATGTTGCAGATTTTCAATATTCCTGGAGTTGGAGAAGGAAGCCTTCAGCACATGGTCAGGCTTTTCTTCTATTTTCCACGTCTTCTAATTTTATCTTTAGGTCTTCTACCCCACAGTTGAGCAGGCGAAAGCGGAGACGGCGCATTTGGAAGATCCCTATTATCAACAAAAAAAAATGAACTACCAAGTGATTTATAGTCAACCAGCAGCAGAAAGTCAACAATACTATACGCAGCAAAGAGAGGAAGCCAGTGATTATCAGCCAGGTAGATCATTGATTATATTGCGATAGGTACACAAATGAATAATATTCAGAAGACTCCTCAACTGCTCAGTATCAAGAGTACAACCCGTATGCAAAACCACGTACTCCACCACAAGAAGAGGAAGATATTGGAGATTATGTTTATAACACCACTGTGCCGGTGGAGCAAAATGGTTTGGAAGATTCTTCTGGAAAGTAATTGAGGAAATTATTTCAGGAGCATCCCCACAACCAAATGAGTACAATCCAGAAGTATGAGGATCTCCTATTTACTAATTTATTGATGAATTCCTC</canonical>
            <polymorphic>AGAATTCTGAGATTTTCAAGCTCTGAAATTCAGGAATTCAGAAACTCCCTCAAAAAAAACTGTACCCCCGAATCACAAACGTTGTACCCCTGAATGAAATGAGTTGTACCCCGAATTTTTGGCAGAAATTCTACTCAGTTGACCCTCCGAAATAACACCTTCAATAGTCTGCAATTGTGTTTGTTTTCATCAAAAAACTACGAAAAAGATGTAAAAACAAAAATTCATCATGTTCAGAATCATATACTCAAATTGGTCTCAATGACCCCTATGAGACTATCAATGCCGCCTGGGAGCATTTGGTCCGATGCCCCCTATGAGACATGGTGGGATGCCCCCTAAGAGACAACTTCAGGATGCCCTCTATGAGTTAGTGACCCCTATGAGTGTATGCCCCCTTTGAGCACGATGCCCCCTGGGGTATCCGTTGGCGATGAAGGAATGTTGCAGATTTTCAATATTCCTGGAGTTGGAGAAGGAAGCCTTCAGCACATGGTCARGCTTTTCTTCTATTTTCCACGTCTTCTAATTTTATCTTTAGGTCTTCTACCCCACAGTTGAGCAGGCGAAAGCGGAGACGGCGCATTTGGAAGATCCCTATTATCAACAAAAAAAAATGAACTACCAAGTGATTTATAGTCAACCAGCAGCAGAAAGTCAACAATACTATACGCAGCAAAGAGAGGAAGCCAGTGATTATCAGCCAGGTAGATCATTGATTATATTGCGATAGGTACACAAATGAATAATATTCAGAAGACTCCTCAACTGCTCAGTATCAAGAGTACAACCCGTATGCAAAACCACGTACTCCACCACAAGAAGAGGAAGATATTGGAGATTATGTTTATAACACCACTGTGCCGGTGGAGCAAAATGGTTTGGAAGATTCTTCTGGAAAGTAATTGAGGAAATTATTTCAGGAGCATCCCCACAACCAAATGAGTACAATCCAGAAGTATGAGGATCTCCTATTTACTAATTTATTGATGAATTCCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>462 297 188 20 19 14</canonical_bands>
                <polymorphic_bands>462 297 207 20 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGCCCTCTATGAGTTAGTGAC</pcr_primer_p1>
		<pcr_primer_p2>TTGATAATAGGGATCTTCCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATGCCCTCTATGAGTTAGTGACCCCTATGAGTGTATGCCCCCTTTGAGCACGATGCCCCCTGGGGTATCCGTTGGCGATGAAGGAATGTTGCAGATTTTCAATATTCCTGGAGTTGGAGAAGGAAGCCTTCAGCACATGGTCAGGCTTTTCTTCTATTTTCCACGTCTTCTAATTTTATCTTTAGGTCTTCTACCCCACAGTTGAGCAGGCGAAAGCGGAGACGGCGCATTTGGAAGATCCCTATTATCAA</canonical_amplicon>
		<polymorphic_amplicon>ATGCCCTCTATGAGTTAGTGACCCCTATGAGTGTATGCCCCCTTTGAGCACGATGCCCCCTGGGGTATCCGTTGGCGATGAAGGAATGTTGCAGATTTTCAATATTCCTGGAGTTGGAGAAGGAAGCCTTCAGCACATGGTCARGCTTTTCTTCTATTTTCCACGTCTTCTAATTTTATCTTTAGGTCTTCTACCCCACAGTTGAGCAGGCGAAAGCGGAGACGGCGCATTTGGAAGATCCCTATTATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1140</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>335037</contig_pos>
        <strand></strand>
        <context>GAGTTGGAGA[A/G]GGAAGCCTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTGGCGATGAAGGAATGTTGCAGATTTTCAATATTCCTGGAGTTGGAGA</left_flank>
        <right_flank>GGAAGCCTTCAGCACATGGTCAGGCTTTTCTTCTATTTTCCACGTCTTCT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTCAAAGTTCTGAAATTCTAAGAATTCTGAGATTTTCAAGCTCTGAAATTCAGGAATTCAGAAACTCCCTCAAAAAAAACTGTACCCCCGAATCACAAACGTTGTACCCCTGAATGAAATGAGTTGTACCCCGAATTTTTGGCAGAAATTCTACTCAGTTGACCCTCCGAAATAACACCTTCAATAGTCTGCAATTGTGTTTGTTTTCATCAAAAAACTACGAAAAAGATGTAAAAACAAAAATTCATCATGTTCAGAATCATATACTCAAATTGGTCTCAATGACCCCTATGAGACTATCAATGCCGCCTGGGAGCATTTGGTCCGATGCCCCCTATGAGACATGGTGGGATGCCCCCTAAGAGACAACTTCAGGATGCCCTCTATGAGTTAGTGACCCCTATGAGTGTATGCCCCCTTTGAGCACGATGCCCCCTGGGGTATCCGTTGGCGATGAAGGAATGTTGCAGATTTTCAATATTCCTGGAGTTGGAGAAGGAAGCCTTCAGCACATGGTCAGGCTTTTCTTCTATTTTCCACGTCTTCTAATTTTATCTTTAGGTCTTCTACCCCACAGTTGAGCAGGCGAAAGCGGAGACGGCGCATTTGGAAGATCCCTATTATCAACAAAAAAAAATGAACTACCAAGTGATTTATAGTCAACCAGCAGCAGAAAGTCAACAATACTATACGCAGCAAAGAGAGGAAGCCAGTGATTATCAGCCAGGTAGATCATTGATTATATTGCGATAGGTACACAAATGAATAATATTCAGAAGACTCCTCAACTGCTCAGTATCAAGAGTACAACCCGTATGCAAAACCACGTACTCCACCACAAGAAGAGGAAGATATTGGAGATTATGTTTATAACACCACTGTGCCGGTGGAGCAAAATGGTTTGGAAGATTCTTCTGGAAAGTAATTGAGGAAATTATTTCAGGAGCATCCCCACAACCAAATGAGTACAATCCAGAAGTATGAGGATCTCCTATTT</canonical>
            <polymorphic>AATTTCAAAGTTCTGAAATTCTAAGAATTCTGAGATTTTCAAGCTCTGAAATTCAGGAATTCAGAAACTCCCTCAAAAAAAACTGTACCCCCGAATCACAAACGTTGTACCCCTGAATGAAATGAGTTGTACCCCGAATTTTTGGCAGAAATTCTACTCAGTTGACCCTCCGAAATAACACCTTCAATAGTCTGCAATTGTGTTTGTTTTCATCAAAAAACTACGAAAAAGATGTAAAAACAAAAATTCATCATGTTCAGAATCATATACTCAAATTGGTCTCAATGACCCCTATGAGACTATCAATGCCGCCTGGGAGCATTTGGTCCGATGCCCCCTATGAGACATGGTGGGATGCCCCCTAAGAGACAACTTCAGGATGCCCTCTATGAGTTAGTGACCCCTATGAGTGTATGCCCCCTTTGAGCACGATGCCCCCTGGGGTATCCGTTGGCGATGAAGGAATGTTGCAGATTTTCAATATTCCTGGAGTTGGAGARGGAAGCCTTCAGCACATGGTCAGGCTTTTCTTCTATTTTCCACGTCTTCTAATTTTATCTTTAGGTCTTCTACCCCACAGTTGAGCAGGCGAAAGCGGAGACGGCGCATTTGGAAGATCCCTATTATCAACAAAAAAAAATGAACTACCAAGTGATTTATAGTCAACCAGCAGCAGAAAGTCAACAATACTATACGCAGCAAAGAGAGGAAGCCAGTGATTATCAGCCAGGTAGATCATTGATTATATTGCGATAGGTACACAAATGAATAATATTCAGAAGACTCCTCAACTGCTCAGTATCAAGAGTACAACCCGTATGCAAAACCACGTACTCCACCACAAGAAGAGGAAGATATTGGAGATTATGTTTATAACACCACTGTGCCGGTGGAGCAAAATGGTTTGGAAGATTCTTCTGGAAAGTAATTGAGGAAATTATTTCAGGAGCATCCCCACAACCAAATGAGTACAATCCAGAAGTATGAGGATCTCCTATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGCCCTCTATGAGTTAGTGAC</pcr_primer_p1>
		<pcr_primer_p2>TTGATAATAGGGATCTTCCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATGCCCTCTATGAGTTAGTGACCCCTATGAGTGTATGCCCCCTTTGAGCACGATGCCCCCTGGGGTATCCGTTGGCGATGAAGGAATGTTGCAGATTTTCAATATTCCTGGAGTTGGAGAAGGAAGCCTTCAGCACATGGTCAGGCTTTTCTTCTATTTTCCACGTCTTCTAATTTTATCTTTAGGTCTTCTACCCCACAGTTGAGCAGGCGAAAGCGGAGACGGCGCATTTGGAAGATCCCTATTATCAA</canonical_amplicon>
		<polymorphic_amplicon>ATGCCCTCTATGAGTTAGTGACCCCTATGAGTGTATGCCCCCTTTGAGCACGATGCCCCCTGGGGTATCCGTTGGCGATGAAGGAATGTTGCAGATTTTCAATATTCCTGGAGTTGGAGARGGAAGCCTTCAGCACATGGTCAGGCTTTTCTTCTATTTTCCACGTCTTCTAATTTTATCTTTAGGTCTTCTACCCCACAGTTGAGCAGGCGAAAGCGGAGACGGCGCATTTGGAAGATCCCTATTATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1143</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>350657</contig_pos>
        <strand>+</strand>
        <context>TTGTGTTGTT[G/T]CTGGAAATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATATTCCCATTTAAACATATAAATTGATGTACGTCTATCGTTGTGTTGTT</left_flank>
        <right_flank>CTGGAAATAATAGACATTAGCTTTATCTAGCGATGAAACCTACCCAACGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGGAGCGGTTGTACTTGAAAAGGGGATTATAAAGTAATGGAAATAGTTTTTGAAAAAAATAGAATTTTGTATTTTATAATCGGATTTCAGTTCTGGATCACAAGATTCCCTACTAAATACAATGCAATCTTCGATTCATGATGCACAAACAAGAGAAAAATGGATAAATTTTTAAGAAGCGAAATAAAAATTGCAAGAACAACAAGTATAGAATAGTTTCAGCTATCACTTCTTCTTTCCGTGGCTGCTCTTTTTGGTTTTCGACTTGACTGGTTTTGAAATTTTCGACTTTTTCTTCATGACGATTTTTGGAGTTTTCGCCTCTTCGACAGTTGGACTCTCACAAGTTTTCGTTGCCGTATCTCCTCCATCCATTTTCTCTTTCTTCTTCTCACTTCTTTGAAGAGAACTGTATGGATCCAGGCGGAAATAATCTCGAATGTCAGAATATTCCCATTTAAACATATAAATTGATGTACGTCTATCGTTGTGTTGTTGCTGGAAATAATAGACATTAGCTTTATCTAGCGATGAAACCTACCCAACGAACATACGACGGCATTTGCTTCGTCTCCCAATCATAAGGGTCGATCCAAGTGGATTTGCTTTTATCGTAGACTGCCTTGAACGTGTTATAAACTAATTCATAGTTAGGGAAAGAGTAGAATGTACACGACCGAAGCATCTGCTCCACAGCGTCGAAGGAATCTGAAGAATGTTTTTTTTTCAATTAAAAAACTGAAATGAAACAAATCTTACTATCTTTGAAGAGCTCACTGAGTTTGAATTTGAGCTTGCAATTTTTTAATTGCTCATCTTCGAGAGCATACCATGGAAGAGGTTCAACCATCTCAGCGATCATGTACATCAGAGACCAAACATCGTCTATTCTAGCCAAATCAATGTAATCGTGAGCATTTGGTGATGCGTAGACGGGAGTTCCTCTCAACGATGTTATTTTTTTCTTGGGTGGTCGGAACTCTAGATTTGCCGAGTCT</canonical>
            <polymorphic>TTGGGAGCGGTTGTACTTGAAAAGGGGATTATAAAGTAATGGAAATAGTTTTTGAAAAAAATAGAATTTTGTATTTTATAATCGGATTTCAGTTCTGGATCACAAGATTCCCTACTAAATACAATGCAATCTTCGATTCATGATGCACAAACAAGAGAAAAATGGATAAATTTTTAAGAAGCGAAATAAAAATTGCAAGAACAACAAGTATAGAATAGTTTCAGCTATCACTTCTTCTTTCCGTGGCTGCTCTTTTTGGTTTTCGACTTGACTGGTTTTGAAATTTTCGACTTTTTCTTCATGACGATTTTTGGAGTTTTCGCCTCTTCGACAGTTGGACTCTCACAAGTTTTCGTTGCCGTATCTCCTCCATCCATTTTCTCTTTCTTCTTCTCACTTCTTTGAAGAGAACTGTATGGATCCAGGCGGAAATAATCTCGAATGTCAGAATATTCCCATTTAAACATATAAATTGATGTACGTCTATCGTTGTGTTGTTKCTGGAAATAATAGACATTAGCTTTATCTAGCGATGAAACCTACCCAACGAACATACGACGGCATTTGCTTCGTCTCCCAATCATAAGGGTCGATCCAAGTGGATTTGCTTTTATCGTAGACTGCCTTGAACGTGTTATAAACTAATTCATAGTTAGGGAAAGAGTAGAATGTACACGACCGAAGCATCTGCTCCACAGCGTCGAAGGAATCTGAAGAATGTTTTTTTTTCAATTAAAAAACTGAAATGAAACAAATCTTACTATCTTTGAAGAGCTCACTGAGTTTGAATTTGAGCTTGCAATTTTTTAATTGCTCATCTTCGAGAGCATACCATGGAAGAGGTTCAACCATCTCAGCGATCATGTACATCAGAGACCAAACATCGTCTATTCTAGCCAAATCAATGTAATCGTGAGCATTTGGTGATGCGTAGACGGGAGTTCCTCTCAACGATGTTATTTTTTTCTTGGGTGGTCGGAACTCTAGATTTGCCGAGTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCATTTTCTCTTTCTTCTTCT</pcr_primer_p1>
		<pcr_primer_p2>CTACGATAAAAGCAAATCCACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATCCATTTTCTCTTTCTTCTTCTCACTTCTTTGAAGAGAACTGTATGGATCCAGGCGGAAATAATCTCGAATGTCAGAATATTCCCATTTAAACATATAAATTGATGTACGTCTATCGTTGTGTTGTTGCTGGAAATAATAGACATTAGCTTTATCTAGCGATGAAACCTACCCAACGAACATACGACGGCATTTGCTTCGTCTCCCAATCATAAGGGTCGATCCAAGTGGATTTGCTTTTATCGTAG</canonical_amplicon>
		<polymorphic_amplicon>ATCCATTTTCTCTTTCTTCTTCTCACTTCTTTGAAGAGAACTGTATGGATCCAGGCGGAAATAATCTCGAATGTCAGAATATTCCCATTTAAACATATAAATTGATGTACGTCTATCGTTGTGTTGTTKCTGGAAATAATAGACATTAGCTTTATCTAGCGATGAAACCTACCCAACGAACATACGACGGCATTTGCTTCGTCTCCCAATCATAAGGGTCGATCCAAGTGGATTTGCTTTTATCGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1147</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>353312</contig_pos>
        <strand>+</strand>
        <context>GTGAATGGGT[C/T]TCGCAGCGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGGCGCAGTTTAAAGAAAATGCTCTCAGAGATTACGGTAGTGAATGGGT</left_flank>
        <right_flank>TCGCAGCGATTTCCAAAAAATCTCGGATTTTTTGTCTGGGCACGCTGTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAATAATTTTAAAGTGGACGCGGGTTTGATCTAGATCATGATCTATTTCTTCAAAATCAACTGGTTGCAAGGCGCNNNNNNNNNNTTTTTTCGCTCGTTTTCACTGTTTTTTCAAATTTTCCGATATATCTGGAAGAAAAATTGACAAAAACCTGGAAAACTCTTGAAAAAACCGAAAAAAAAGTGAAAACGAGCGAAAAAATTTTAAAAATTTGAATTCGCGCGCTTTTACTCACCGGGCGGCCTAGAAAAAACCTCGTCCCTAAGGGCTTCCAGCGTATTTTTCGATGCGTTTTTCTCGATGAAGGAATTTTTTTGAATTTTTTCTTTATTTTTATGGGAATCTACATGCATTTCTGCACATTTTGATGCAATAAAATTTCACCGTACACCACCTTTAACCTTTTTTTTCTCAGACAAGCATAATAATAAAAATTGTGAAAATTAAAGGCGCAGTTTAAAGAAAATGCTCTCAGAGATTACGGTAGTGAATGGGTTTCGCAGCGATTTCCAAAAAATCTCGGATTTTTTGTCTGGGCACGCTGTTTTCCCGTTTTTCGGCGTTCTTCTCTGCTTTTTGAACCGAATTTGACTCCCAGACATTCCAGTAATGAGTAGATTCGATGTTGAAGCCATTATCGACTTTGCCAAATTTGAACGCTTGATCGAAGACGCTTTGAATTCGAAAGCCAAATTCCTGCCGAAATGCGTTTTGACCTCCAAACAGCGGCATTCGAAATATGCATTTCTGGTAAATCAGTGGTTTTTTCTGTTTTAATATGCGATATGATTTTCAGGTGCACTGGTCGAATTCCACTGTAGCAGAACGAACATGGGAAACGGAAGAGAGTATCGGAAGTTCACAACAGATGTTACTAGATTTCAAGAGAGCGAAGAAACTACCTCTAGAACACCAGAAAATTTATAAGAGCTATGCTTTGGATGTTTACCAGAGACTGGTAAAAGCCGCGAAACTATTCAAGCCAGTCGACGTTGAG</canonical>
            <polymorphic>TTTAATAATTTTAAAGTGGACGCGGGTTTGATCTAGATCATGATCTATTTCTTCAAAATCAACTGGTTGCAAGGCGCNNNNNNNNNNTTTTTTCGCTCGTTTTCACTGTTTTTTCAAATTTTCCGATATATCTGGAAGAAAAATTGACAAAAACCTGGAAAACTCTTGAAAAAACCGAAAAAAAAGTGAAAACGAGCGAAAAAATTTTAAAAATTTGAATTCGCGCGCTTTTACTCACCGGGCGGCCTAGAAAAAACCTCGTCCCTAAGGGCTTCCAGCGTATTTTTCGATGCGTTTTTCTCGATGAAGGAATTTTTTTGAATTTTTTCTTTATTTTTATGGGAATCTACATGCATTTCTGCACATTTTGATGCAATAAAATTTCACCGTACACCACCTTTAACCTTTTTTTTCTCAGACAAGCATAATAATAAAAATTGTGAAAATTAAAGGCGCAGTTTAAAGAAAATGCTCTCAGAGATTACGGTAGTGAATGGGTYTCGCAGCGATTTCCAAAAAATCTCGGATTTTTTGTCTGGGCACGCTGTTTTCCCGTTTTTCGGCGTTCTTCTCTGCTTTTTGAACCGAATTTGACTCCCAGACATTCCAGTAATGAGTAGATTCGATGTTGAAGCCATTATCGACTTTGCCAAATTTGAACGCTTGATCGAAGACGCTTTGAATTCGAAAGCCAAATTCCTGCCGAAATGCGTTTTGACCTCCAAACAGCGGCATTCGAAATATGCATTTCTGGTAAATCAGTGGTTTTTTCTGTTTTAATATGCGATATGATTTTCAGGTGCACTGGTCGAATTCCACTGTAGCAGAACGAACATGGGAAACGGAAGAGAGTATCGGAAGTTCACAACAGATGTTACTAGATTTCAAGAGAGCGAAGAAACTACCTCTAGAACACCAGAAAATTTATAAGAGCTATGCTTTGGATGTTTACCAGAGACTGGTAAAAGCCGCGAAACTATTCAAGCCAGTCGACGTTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTAAAGGCGCAGTTTAAAGA</pcr_primer_p1>
		<pcr_primer_p2>AAATTTGGCAAAGTCGATAAT</pcr_primer_p2>
		<pcr_amplicon_size>212</pcr_amplicon_size>
		<canonical_amplicon>ATTAAAGGCGCAGTTTAAAGAAAATGCTCTCAGAGATTACGGTAGTGAATGGGTTTCGCAGCGATTTCCAAAAAATCTCGGATTTTTTGTCTGGGCACGCTGTTTTCCCGTTTTTCGGCGTTCTTCTCTGCTTTTTGAACCGAATTTGACTCCCAGACATTCCAGTAATGAGTAGATTCGATGTTGAAGCCATTATCGACTTTGCCAAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATTAAAGGCGCAGTTTAAAGAAAATGCTCTCAGAGATTACGGTAGTGAATGGGTYTCGCAGCGATTTCCAAAAAATCTCGGATTTTTTGTCTGGGCACGCTGTTTTCCCGTTTTTCGGCGTTCTTCTCTGCTTTTTGAACCGAATTTGACTCCCAGACATTCCAGTAATGAGTAGATTCGATGTTGAAGCCATTATCGACTTTGCCAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1149</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>355355</contig_pos>
        <strand>+</strand>
        <context>TCTCCCACCA[C/T]CCCAAAATAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTCCAGAAATTCACGACTTCGAAAAGGGAAAACTCAACTCTCCCACCA</left_flank>
        <right_flank>CCCAAAATATGTAAAATGTTGTGTTTCCCTTGTTTCCTCTTTTTTATGAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGCAGATTCGGGTAATTATTCACAAAATCTCAAATAAAGGTTTACTCTAGCCCAGATCTCGCCAAAGCACATGAAGAAGCATTTGATTCGATCCGAGTTTGGCTACAAATGGCTGCTGCTGCAAATGGAGAGGAGCTTAGGGCGTGTCGTGTCAAGTATATTCGTGAAGTACTGATAATGTATGCCAAGTTATAAATTTTGTAGAAAAATAGTATGTCAAAATCTACCAAGACAAAAGAACGGTGTGGACTGCGGAATTTTTATGATGGCATTCGCCGAGTATTTCACATGGTTTAACACCGAATGGCTGGTTTGTTGATTATCAGTGATAGTTTCATGATTCAACGTTTTCAGAGGGCTCCAACAGATTCGCTTGTAAATATGAGAATGGATGACGATCTGAAACATCTGCTGGACAGTGTAGAACCACGCATGCGGCTGGAGGCGATTCTCCAGAAATTCACGACTTCGAAAAGGGAAAACTCAACTCTCCCACCATCCCAAAATATGTAAAATGTTGTGTTTCCCTTGTTTCCTCTTTTTTATGATACTTTTGCTTAGTTGATTTCCCGTATTTTTCTCACTCTAATCTATGTAACTGGTCTATTATAACTTTAGAGTAGTTCATAATCATTGCCTGTTAATACTTTATCAATGCTCCCCCCCCCCCCTGAGATCTCGTTTTTTTTGTTACTCTTACTGTAAAATGAAGCATCTGCCAGTTTGATTTTACCAGAGAGTACCTTTAAAAATAATTCGACATATCGGTGAAGTGCGCCGCAGAGTTGCGAAACTCTGCGCACGCCGTTGCACTACATGCTCCTCCCCTTTTTCAAACGGCTCTGCTTTCGGATTATTGAGGATTGGATCTAAAAAATTGTTTGGAATGATTTTTTTTGAAAATAATTTTTTAATAAACATCTCTTTCATATCTGTTTCGTTACATTTATGTTCTGTCCTAGAATAAATCAATTTTCAGGCCTGAACAATGCATTTATA</canonical>
            <polymorphic>CCGCAGATTCGGGTAATTATTCACAAAATCTCAAATAAAGGTTTACTCTAGCCCAGATCTCGCCAAAGCACATGAAGAAGCATTTGATTCGATCCGAGTTTGGCTACAAATGGCTGCTGCTGCAAATGGAGAGGAGCTTAGGGCGTGTCGTGTCAAGTATATTCGTGAAGTACTGATAATGTATGCCAAGTTATAAATTTTGTAGAAAAATAGTATGTCAAAATCTACCAAGACAAAAGAACGGTGTGGACTGCGGAATTTTTATGATGGCATTCGCCGAGTATTTCACATGGTTTAACACCGAATGGCTGGTTTGTTGATTATCAGTGATAGTTTCATGATTCAACGTTTTCAGAGGGCTCCAACAGATTCGCTTGTAAATATGAGAATGGATGACGATCTGAAACATCTGCTGGACAGTGTAGAACCACGCATGCGGCTGGAGGCGATTCTCCAGAAATTCACGACTTCGAAAAGGGAAAACTCAACTCTCCCACCAYCCCAAAATATGTAAAATGTTGTGTTTCCCTTGTTTCCTCTTTTTTATGATACTTTTGCTTAGTTGATTTCCCGTATTTTTCTCACTCTAATCTATGTAACTGGTCTATTATAACTTTAGAGTAGTTCATAATCATTGCCTGTTAATACTTTATCAATGCTCCCCCCCCCCCCTGAGATCTCGTTTTTTTTGTTACTCTTACTGTAAAATGAAGCATCTGCCAGTTTGATTTTACCAGAGAGTACCTTTAAAAATAATTCGACATATCGGTGAAGTGCGCCGCAGAGTTGCGAAACTCTGCGCACGCCGTTGCACTACATGCTCCTCCCCTTTTTCAAACGGCTCTGCTTTCGGATTATTGAGGATTGGATCTAAAAAATTGTTTGGAATGATTTTTTTTGAAAATAATTTTTTAATAAACATCTCTTTCATATCTGTTTCGTTACATTTATGTTCTGTCCTAGAATAAATCAATTTTCAGGCCTGAACAATGCATTTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTTTCATGATTCAACGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATACGGGAAATCAACTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGTTTCATGATTCAACGTTTTCAGAGGGCTCCAACAGATTCGCTTGTAAATATGAGAATGGATGACGATCTGAAACATCTGCTGGACAGTGTAGAACCACGCATGCGGCTGGAGGCGATTCTCCAGAAATTCACGACTTCGAAAAGGGAAAACTCAACTCTCCCACCATCCCAAAATATGTAAAATGTTGTGTTTCCCTTGTTTCCTCTTTTTTATGATACTTTTGCTTAGTTGATTTCCCGTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TAGTTTCATGATTCAACGTTTTCAGAGGGCTCCAACAGATTCGCTTGTAAATATGAGAATGGATGACGATCTGAAACATCTGCTGGACAGTGTAGAACCACGCATGCGGCTGGAGGCGATTCTCCAGAAATTCACGACTTCGAAAAGGGAAAACTCAACTCTCCCACCAYCCCAAAATATGTAAAATGTTGTGTTTCCCTTGTTTCCTCTTTTTTATGATACTTTTGCTTAGTTGATTTCCCGTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1150</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>355594</contig_pos>
        <strand>+</strand>
        <context>TTTTACCAGA[G/T]AGTACCTTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGTTACTCTTACTGTAAAATGAAGCATCTGCCAGTTTGATTTTACCAGA</left_flank>
        <right_flank>AGTACCTTTAAAAATAATTCGACATATCGGTGAAGTGCGCCGCAGAGTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGGTGTGGACTGCGGAATTTTTATGATGGCATTCGCCGAGTATTTCACATGGTTTAACACCGAATGGCTGGTTTGTTGATTATCAGTGATAGTTTCATGATTCAACGTTTTCAGAGGGCTCCAACAGATTCGCTTGTAAATATGAGAATGGATGACGATCTGAAACATCTGCTGGACAGTGTAGAACCACGCATGCGGCTGGAGGCGATTCTCCAGAAATTCACGACTTCGAAAAGGGAAAACTCAACTCTCCCACCATCCCAAAATATGTAAAATGTTGTGTTTCCCTTGTTTCCTCTTTTTTATGATACTTTTGCTTAGTTGATTTCCCGTATTTTTCTCACTCTAATCTATGTAACTGGTCTATTATAACTTTAGAGTAGTTCATAATCATTGCCTGTTAATACTTTATCAATGCTCCCCCCCCCCCCTGAGATCTCGTTTTTTTTGTTACTCTTACTGTAAAATGAAGCATCTGCCAGTTTGATTTTACCAGAGAGTACCTTTAAAAATAATTCGACATATCGGTGAAGTGCGCCGCAGAGTTGCGAAACTCTGCGCACGCCGTTGCACTACATGCTCCTCCCCTTTTTCAAACGGCTCTGCTTTCGGATTATTGAGGATTGGATCTAAAAAATTGTTTGGAATGATTTTTTTTGAAAATAATTTTTTAATAAACATCTCTTTCATATCTGTTTCGTTACATTTATGTTCTGTCCTAGAATAAATCAATTTTCAGGCCTGAACAATGCATTTATACAATTTAACGCTGCAAGGCCAAACGGCTATCAACCAGGCCATTCAGGGTAATTTTTCAGGACTTCCCAAATCACAAGTAAGTTGAAAAATTGGCGAAAAAATGTAAAGACTAATCCCAATGTTAGCAGGAAATTGTTGTGGGACGAGGATCGGCACTCGAGCTGCTACAACTTGACACAGTAACTGGAAAAATAAAGGTAAAAATTTTTATGTTGTTGAACGAATTAAAACTGAAAATT</canonical>
            <polymorphic>AACGGTGTGGACTGCGGAATTTTTATGATGGCATTCGCCGAGTATTTCACATGGTTTAACACCGAATGGCTGGTTTGTTGATTATCAGTGATAGTTTCATGATTCAACGTTTTCAGAGGGCTCCAACAGATTCGCTTGTAAATATGAGAATGGATGACGATCTGAAACATCTGCTGGACAGTGTAGAACCACGCATGCGGCTGGAGGCGATTCTCCAGAAATTCACGACTTCGAAAAGGGAAAACTCAACTCTCCCACCATCCCAAAATATGTAAAATGTTGTGTTTCCCTTGTTTCCTCTTTTTTATGATACTTTTGCTTAGTTGATTTCCCGTATTTTTCTCACTCTAATCTATGTAACTGGTCTATTATAACTTTAGAGTAGTTCATAATCATTGCCTGTTAATACTTTATCAATGCTCCCCCCCCCCCCTGAGATCTCGTTTTTTTTGTTACTCTTACTGTAAAATGAAGCATCTGCCAGTTTGATTTTACCAGAKAGTACCTTTAAAAATAATTCGACATATCGGTGAAGTGCGCCGCAGAGTTGCGAAACTCTGCGCACGCCGTTGCACTACATGCTCCTCCCCTTTTTCAAACGGCTCTGCTTTCGGATTATTGAGGATTGGATCTAAAAAATTGTTTGGAATGATTTTTTTTGAAAATAATTTTTTAATAAACATCTCTTTCATATCTGTTTCGTTACATTTATGTTCTGTCCTAGAATAAATCAATTTTCAGGCCTGAACAATGCATTTATACAATTTAACGCTGCAAGGCCAAACGGCTATCAACCAGGCCATTCAGGGTAATTTTTCAGGACTTCCCAAATCACAAGTAAGTTGAAAAATTGGCGAAAAAATGTAAAGACTAATCCCAATGTTAGCAGGAAATTGTTGTGGGACGAGGATCGGCACTCGAGCTGCTACAACTTGACACAGTAACTGGAAAAATAAAGGTAAAAATTTTTATGTTGTTGAACGAATTAAAACTGAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCATAATCATTGCCTGTTAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTAGATCCAATCCTCAATAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GTTCATAATCATTGCCTGTTAATACTTTATCAATGCTCCCCCCCCCCCCTGAGATCTCGTTTTTTTTGTTACTCTTACTGTAAAATGAAGCATCTGCCAGTTTGATTTTACCAGAGAGTACCTTTAAAAATAATTCGACATATCGGTGAAGTGCGCCGCAGAGTTGCGAAACTCTGCGCACGCCGTTGCACTACATGCTCCTCCCCTTTTTCAAACGGCTCTGCTTTCGGATTATTGAGGATTGGATCTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTTCATAATCATTGCCTGTTAATACTTTATCAATGCTCCCCCCCCCCCCTGAGATCTCGTTTTTTTTGTTACTCTTACTGTAAAATGAAGCATCTGCCAGTTTGATTTTACCAGAKAGTACCTTTAAAAATAATTCGACATATCGGTGAAGTGCGCCGCAGAGTTGCGAAACTCTGCGCACGCCGTTGCACTACATGCTCCTCCCCTTTTTCAAACGGCTCTGCTTTCGGATTATTGAGGATTGGATCTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1151</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>355675</contig_pos>
        <strand>+</strand>
        <context>TGCACTACAT[C/G]CTCCTCCCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGAAGTGCGCCGCAGAGTTGCGAAACTCTGCGCACGCCGTTGCACTACAT</left_flank>
        <right_flank>CTCCTCCCCTTTTTCAAACGGCTCTGCTTTCGGATTATTGAGGATTGGAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATCAGTGATAGTTTCATGATTCAACGTTTTCAGAGGGCTCCAACAGATTCGCTTGTAAATATGAGAATGGATGACGATCTGAAACATCTGCTGGACAGTGTAGAACCACGCATGCGGCTGGAGGCGATTCTCCAGAAATTCACGACTTCGAAAAGGGAAAACTCAACTCTCCCACCATCCCAAAATATGTAAAATGTTGTGTTTCCCTTGTTTCCTCTTTTTTATGATACTTTTGCTTAGTTGATTTCCCGTATTTTTCTCACTCTAATCTATGTAACTGGTCTATTATAACTTTAGAGTAGTTCATAATCATTGCCTGTTAATACTTTATCAATGCTCCCCCCCCCCCCTGAGATCTCGTTTTTTTTGTTACTCTTACTGTAAAATGAAGCATCTGCCAGTTTGATTTTACCAGAGAGTACCTTTAAAAATAATTCGACATATCGGTGAAGTGCGCCGCAGAGTTGCGAAACTCTGCGCACGCCGTTGCACTACATGCTCCTCCCCTTTTTCAAACGGCTCTGCTTTCGGATTATTGAGGATTGGATCTAAAAAATTGTTTGGAATGATTTTTTTTGAAAATAATTTTTTAATAAACATCTCTTTCATATCTGTTTCGTTACATTTATGTTCTGTCCTAGAATAAATCAATTTTCAGGCCTGAACAATGCATTTATACAATTTAACGCTGCAAGGCCAAACGGCTATCAACCAGGCCATTCAGGGTAATTTTTCAGGACTTCCCAAATCACAAGTAAGTTGAAAAATTGGCGAAAAAATGTAAAGACTAATCCCAATGTTAGCAGGAAATTGTTGTGGGACGAGGATCGGCACTCGAGCTGCTACAACTTGACACAGTAACTGGAAAAATAAAGGTAAAAATTTTTATGTTGTTGAACGAATTAAAACTGAAAATTACGATACTTCTTAATTGAAAAAACATTTCTAATTTTCTGTATTTTAGGTCATGTGCCATCAAGACATATTCGGATCGTCCG</canonical>
            <polymorphic>TTATCAGTGATAGTTTCATGATTCAACGTTTTCAGAGGGCTCCAACAGATTCGCTTGTAAATATGAGAATGGATGACGATCTGAAACATCTGCTGGACAGTGTAGAACCACGCATGCGGCTGGAGGCGATTCTCCAGAAATTCACGACTTCGAAAAGGGAAAACTCAACTCTCCCACCATCCCAAAATATGTAAAATGTTGTGTTTCCCTTGTTTCCTCTTTTTTATGATACTTTTGCTTAGTTGATTTCCCGTATTTTTCTCACTCTAATCTATGTAACTGGTCTATTATAACTTTAGAGTAGTTCATAATCATTGCCTGTTAATACTTTATCAATGCTCCCCCCCCCCCCTGAGATCTCGTTTTTTTTGTTACTCTTACTGTAAAATGAAGCATCTGCCAGTTTGATTTTACCAGAGAGTACCTTTAAAAATAATTCGACATATCGGTGAAGTGCGCCGCAGAGTTGCGAAACTCTGCGCACGCCGTTGCACTACATSCTCCTCCCCTTTTTCAAACGGCTCTGCTTTCGGATTATTGAGGATTGGATCTAAAAAATTGTTTGGAATGATTTTTTTTGAAAATAATTTTTTAATAAACATCTCTTTCATATCTGTTTCGTTACATTTATGTTCTGTCCTAGAATAAATCAATTTTCAGGCCTGAACAATGCATTTATACAATTTAACGCTGCAAGGCCAAACGGCTATCAACCAGGCCATTCAGGGTAATTTTTCAGGACTTCCCAAATCACAAGTAAGTTGAAAAATTGGCGAAAAAATGTAAAGACTAATCCCAATGTTAGCAGGAAATTGTTGTGGGACGAGGATCGGCACTCGAGCTGCTACAACTTGACACAGTAACTGGAAAAATAAAGGTAAAAATTTTTATGTTGTTGAACGAATTAAAACTGAAAATTACGATACTTCTTAATTGAAAAAACATTTCTAATTTTCTGTATTTTAGGTCATGTGCCATCAAGACATATTCGGATCGTCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCANNNNNTGC</site>
                <isoschizomers>
                    <enzyme>ApaBI</enzyme>
                    <enzyme>BstAPI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>500 384 116</canonical_bands>
                <polymorphic_bands>884 116</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>472 384 96 31 17</canonical_bands>
                <polymorphic_bands>856 96 31 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCATAATCATTGCCTGTTAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTAGATCCAATCCTCAATAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GTTCATAATCATTGCCTGTTAATACTTTATCAATGCTCCCCCCCCCCCCTGAGATCTCGTTTTTTTTGTTACTCTTACTGTAAAATGAAGCATCTGCCAGTTTGATTTTACCAGAGAGTACCTTTAAAAATAATTCGACATATCGGTGAAGTGCGCCGCAGAGTTGCGAAACTCTGCGCACGCCGTTGCACTACATGCTCCTCCCCTTTTTCAAACGGCTCTGCTTTCGGATTATTGAGGATTGGATCTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTTCATAATCATTGCCTGTTAATACTTTATCAATGCTCCCCCCCCCCCCTGAGATCTCGTTTTTTTTGTTACTCTTACTGTAAAATGAAGCATCTGCCAGTTTGATTTTACCAGAGAGTACCTTTAAAAATAATTCGACATATCGGTGAAGTGCGCCGCAGAGTTGCGAAACTCTGCGCACGCCGTTGCACTACATSCTCCTCCCCTTTTTCAAACGGCTCTGCTTTCGGATTATTGAGGATTGGATCTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1152</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>355708</contig_pos>
        <strand>+</strand>
        <context>TCTGCTTTCG[A/G]ATTATTGAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGCCGTTGCACTACATGCTCCTCCCCTTTTTCAAACGGCTCTGCTTTCG</left_flank>
        <right_flank>ATTATTGAGGATTGGATCTAAAAAATTGTTTGGAATGATTTTTTTTGAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGGGCTCCAACAGATTCGCTTGTAAATATGAGAATGGATGACGATCTGAAACATCTGCTGGACAGTGTAGAACCACGCATGCGGCTGGAGGCGATTCTCCAGAAATTCACGACTTCGAAAAGGGAAAACTCAACTCTCCCACCATCCCAAAATATGTAAAATGTTGTGTTTCCCTTGTTTCCTCTTTTTTATGATACTTTTGCTTAGTTGATTTCCCGTATTTTTCTCACTCTAATCTATGTAACTGGTCTATTATAACTTTAGAGTAGTTCATAATCATTGCCTGTTAATACTTTATCAATGCTCCCCCCCCCCCCTGAGATCTCGTTTTTTTTGTTACTCTTACTGTAAAATGAAGCATCTGCCAGTTTGATTTTACCAGAGAGTACCTTTAAAAATAATTCGACATATCGGTGAAGTGCGCCGCAGAGTTGCGAAACTCTGCGCACGCCGTTGCACTACATGCTCCTCCCCTTTTTCAAACGGCTCTGCTTTCGGATTATTGAGGATTGGATCTAAAAAATTGTTTGGAATGATTTTTTTTGAAAATAATTTTTTAATAAACATCTCTTTCATATCTGTTTCGTTACATTTATGTTCTGTCCTAGAATAAATCAATTTTCAGGCCTGAACAATGCATTTATACAATTTAACGCTGCAAGGCCAAACGGCTATCAACCAGGCCATTCAGGGTAATTTTTCAGGACTTCCCAAATCACAAGTAAGTTGAAAAATTGGCGAAAAAATGTAAAGACTAATCCCAATGTTAGCAGGAAATTGTTGTGGGACGAGGATCGGCACTCGAGCTGCTACAACTTGACACAGTAACTGGAAAAATAAAGGTAAAAATTTTTATGTTGTTGAACGAATTAAAACTGAAAATTACGATACTTCTTAATTGAAAAAACATTTCTAATTTTCTGTATTTTAGGTCATGTGCCATCAAGACATATTCGGATCGTCCGTTCACTTCTCGCTTTCCGCCTCACAGCTGGAAC</canonical>
            <polymorphic>AGAGGGCTCCAACAGATTCGCTTGTAAATATGAGAATGGATGACGATCTGAAACATCTGCTGGACAGTGTAGAACCACGCATGCGGCTGGAGGCGATTCTCCAGAAATTCACGACTTCGAAAAGGGAAAACTCAACTCTCCCACCATCCCAAAATATGTAAAATGTTGTGTTTCCCTTGTTTCCTCTTTTTTATGATACTTTTGCTTAGTTGATTTCCCGTATTTTTCTCACTCTAATCTATGTAACTGGTCTATTATAACTTTAGAGTAGTTCATAATCATTGCCTGTTAATACTTTATCAATGCTCCCCCCCCCCCCTGAGATCTCGTTTTTTTTGTTACTCTTACTGTAAAATGAAGCATCTGCCAGTTTGATTTTACCAGAGAGTACCTTTAAAAATAATTCGACATATCGGTGAAGTGCGCCGCAGAGTTGCGAAACTCTGCGCACGCCGTTGCACTACATGCTCCTCCCCTTTTTCAAACGGCTCTGCTTTCGRATTATTGAGGATTGGATCTAAAAAATTGTTTGGAATGATTTTTTTTGAAAATAATTTTTTAATAAACATCTCTTTCATATCTGTTTCGTTACATTTATGTTCTGTCCTAGAATAAATCAATTTTCAGGCCTGAACAATGCATTTATACAATTTAACGCTGCAAGGCCAAACGGCTATCAACCAGGCCATTCAGGGTAATTTTTCAGGACTTCCCAAATCACAAGTAAGTTGAAAAATTGGCGAAAAAATGTAAAGACTAATCCCAATGTTAGCAGGAAATTGTTGTGGGACGAGGATCGGCACTCGAGCTGCTACAACTTGACACAGTAACTGGAAAAATAAAGGTAAAAATTTTTATGTTGTTGAACGAATTAAAACTGAAAATTACGATACTTCTTAATTGAAAAAACATTTCTAATTTTCTGTATTTTAGGTCATGTGCCATCAAGACATATTCGGATCGTCCGTTCACTTCTCGCTTTCCGCCTCACAGCTGGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>459 450 49 42</canonical_bands>
                <polymorphic_bands>909 49 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTACTGTAAAATGAAGCATCTG</pcr_primer_p1>
		<pcr_primer_p2>TGTAACGAAACAGATATGAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTTACTGTAAAATGAAGCATCTGCCAGTTTGATTTTACCAGAGAGTACCTTTAAAAATAATTCGACATATCGGTGAAGTGCGCCGCAGAGTTGCGAAACTCTGCGCACGCCGTTGCACTACATGCTCCTCCCCTTTTTCAAACGGCTCTGCTTTCGGATTATTGAGGATTGGATCTAAAAAATTGTTTGGAATGATTTTTTTTGAAAATAATTTTTTAATAAACATCTCTTTCATATCTGTTTCGTTACA</canonical_amplicon>
		<polymorphic_amplicon>TCTTACTGTAAAATGAAGCATCTGCCAGTTTGATTTTACCAGAGAGTACCTTTAAAAATAATTCGACATATCGGTGAAGTGCGCCGCAGAGTTGCGAAACTCTGCGCACGCCGTTGCACTACATGCTCCTCCCCTTTTTCAAACGGCTCTGCTTTCGRATTATTGAGGATTGGATCTAAAAAATTGTTTGGAATGATTTTTTTTGAAAATAATTTTTTAATAAACATCTCTTTCATATCTGTTTCGTTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1182</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>416448</contig_pos>
        <strand>+</strand>
        <context>CTCTGAAAAA[A/C]TTTTTTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATTTCAATGATAAGATCGTAGATCTGACGGGCCAATTCTCTCTGAAAAA</left_flank>
        <right_flank>TTTTTTTTTTGCAATTTTCAGTAAAATAAGACTTACCGAAGGAACAATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTCAAGTTCTTGAAGTACGTTCAACGATGCTGCTCCAGCTCTTCCAACGTTCACAACAATCGGTTTTACCAGTGCGGATTTGGCGAAAAATTGAATCTTCTTTGGCATTGTAGCAGAGAATAAAAGTGTTTGTCGTTGAGATTTGAAAAAGTAGAAAATCGATTTTATTTCGTCTTCAAATCCCATATCCAGCATACGATCGGCTTCATCGAGTACCAAATATCGACACACTTCCAGATTGATAATCTTCTTTGTAAGCATGTCAGAAAGTCTTCCAGGAGTCGCAACCACAATATGGATTCCTCTGAAAATAAGGTATTTATTCAAAGAGTTGATGTTTCCTTTTCTTACTGTCTAAAATCCTTGGCTTGCTCTCCAATCGGAACTCCTCCAATACACAATCCAGCTCTCAATTCCGGAAATCCTGCTTTCGCTATAGCTTCAGACATTTCAATGATAAGATCGTAGATCTGACGGGCCAATTCTCTCTGAAAAACTTTTTTTTTTGCAATTTTCAGTAAAATAAGACTTACCGAAGGAACAATGATGAGTCCGAAAGGTCCCTCGTTTCTCATAAATGGGAGTTTCACCTCTTGTTCGATACAGAACATGATCAACGGCAAAACAAACGTCATTGTTTTACCGGAACCTGTTGAAGCGATGCCAATCATGTCACGACCACACAGACTGGAATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAAAAACACTATTTTCAGCACTAAAATTCCAAATTTTCAGCCTAAAAATTCAA</canonical>
            <polymorphic>GAATTCAAGTTCTTGAAGTACGTTCAACGATGCTGCTCCAGCTCTTCCAACGTTCACAACAATCGGTTTTACCAGTGCGGATTTGGCGAAAAATTGAATCTTCTTTGGCATTGTAGCAGAGAATAAAAGTGTTTGTCGTTGAGATTTGAAAAAGTAGAAAATCGATTTTATTTCGTCTTCAAATCCCATATCCAGCATACGATCGGCTTCATCGAGTACCAAATATCGACACACTTCCAGATTGATAATCTTCTTTGTAAGCATGTCAGAAAGTCTTCCAGGAGTCGCAACCACAATATGGATTCCTCTGAAAATAAGGTATTTATTCAAAGAGTTGATGTTTCCTTTTCTTACTGTCTAAAATCCTTGGCTTGCTCTCCAATCGGAACTCCTCCAATACACAATCCAGCTCTCAATTCCGGAAATCCTGCTTTCGCTATAGCTTCAGACATTTCAATGATAAGATCGTAGATCTGACGGGCCAATTCTCTCTGAAAAAMTTTTTTTTTTGCAATTTTCAGTAAAATAAGACTTACCGAAGGAACAATGATGAGTCCGAAAGGTCCCTCGTTTCTCATAAATGGGAGTTTCACCTCTTGTTCGATACAGAACATGATCAACGGCAAAACAAACGTCATTGTTTTACCGGAACCTGTTGAAGCGATGCCAATCATGTCACGACCACACAGACTGGAATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAAAAACACTATTTTCAGCACTAAAATTCCAAATTTTCAGCCTAAAAATTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTTTCTTACTGTCTAAAATCCT</pcr_primer_p1>
		<pcr_primer_p2>GAAACTCCCATTTATGAGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCTTTTCTTACTGTCTAAAATCCTTGGCTTGCTCTCCAATCGGAACTCCTCCAATACACAATCCAGCTCTCAATTCCGGAAATCCTGCTTTCGCTATAGCTTCAGACATTTCAATGATAAGATCGTAGATCTGACGGGCCAATTCTCTCTGAAAAACTTTTTTTTTTGCAATTTTCAGTAAAATAAGACTTACCGAAGGAACAATGATGAGTCCGAAAGGTCCCTCGTTTCTCATAAATGGGAGTTTC</canonical_amplicon>
		<polymorphic_amplicon>CCTTTTCTTACTGTCTAAAATCCTTGGCTTGCTCTCCAATCGGAACTCCTCCAATACACAATCCAGCTCTCAATTCCGGAAATCCTGCTTTCGCTATAGCTTCAGACATTTCAATGATAAGATCGTAGATCTGACGGGCCAATTCTCTCTGAAAAAMTTTTTTTTTTGCAATTTTCAGTAAAATAAGACTTACCGAAGGAACAATGATGAGTCCGAAAGGTCCCTCGTTTCTCATAAATGGGAGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1183</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>416578</contig_pos>
        <strand>+</strand>
        <context>ACGGCAAAAC[A/G]AACGTCATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGGGAGTTTCACCTCTTGTTCGATACAGAACATGATCAACGGCAAAAC</left_flank>
        <right_flank>AACGTCATTGTTTTACCGGAACCTGTTGAAGCGATGCCAATCATGTCACG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTGTCGTTGAGATTTGAAAAAGTAGAAAATCGATTTTATTTCGTCTTCAAATCCCATATCCAGCATACGATCGGCTTCATCGAGTACCAAATATCGACACACTTCCAGATTGATAATCTTCTTTGTAAGCATGTCAGAAAGTCTTCCAGGAGTCGCAACCACAATATGGATTCCTCTGAAAATAAGGTATTTATTCAAAGAGTTGATGTTTCCTTTTCTTACTGTCTAAAATCCTTGGCTTGCTCTCCAATCGGAACTCCTCCAATACACAATCCAGCTCTCAATTCCGGAAATCCTGCTTTCGCTATAGCTTCAGACATTTCAATGATAAGATCGTAGATCTGACGGGCCAATTCTCTCTGAAAAACTTTTTTTTTTGCAATTTTCAGTAAAATAAGACTTACCGAAGGAACAATGATGAGTCCGAAAGGTCCCTCGTTTCTCATAAATGGGAGTTTCACCTCTTGTTCGATACAGAACATGATCAACGGCAAAACAAACGTCATTGTTTTACCGGAACCTGTTGAAGCGATGCCAATCATGTCACGACCACACAGACTGGAATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAAAAACACTATTTTCAGCACTAAAATTCCAAATTTTCAGCCTAAAAATTCAAATTTTCAGCTTATAAAACCCAAATTTTTAGCAAAAATTATTTTTTAACCTCAAAAATAGCTGCTTTCAGCTCAAAACCCCGCTCAAAAGAAGCTTTTTTCCGGTCGAAAAATCTCGATTAAAGGCCACAA</canonical>
            <polymorphic>GTTTGTCGTTGAGATTTGAAAAAGTAGAAAATCGATTTTATTTCGTCTTCAAATCCCATATCCAGCATACGATCGGCTTCATCGAGTACCAAATATCGACACACTTCCAGATTGATAATCTTCTTTGTAAGCATGTCAGAAAGTCTTCCAGGAGTCGCAACCACAATATGGATTCCTCTGAAAATAAGGTATTTATTCAAAGAGTTGATGTTTCCTTTTCTTACTGTCTAAAATCCTTGGCTTGCTCTCCAATCGGAACTCCTCCAATACACAATCCAGCTCTCAATTCCGGAAATCCTGCTTTCGCTATAGCTTCAGACATTTCAATGATAAGATCGTAGATCTGACGGGCCAATTCTCTCTGAAAAACTTTTTTTTTTGCAATTTTCAGTAAAATAAGACTTACCGAAGGAACAATGATGAGTCCGAAAGGTCCCTCGTTTCTCATAAATGGGAGTTTCACCTCTTGTTCGATACAGAACATGATCAACGGCAAAACRAACGTCATTGTTTTACCGGAACCTGTTGAAGCGATGCCAATCATGTCACGACCACACAGACTGGAATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAAAAACACTATTTTCAGCACTAAAATTCCAAATTTTCAGCCTAAAAATTCAAATTTTCAGCTTATAAAACCCAAATTTTTAGCAAAAATTATTTTTTAACCTCAAAAATAGCTGCTTTCAGCTCAAAACCCCGCTCAAAAGAAGCTTTTTTCCGGTCGAAAAATCTCGATTAAAGGCCACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCAGACATTTCAATGATAAGAT</pcr_primer_p1>
		<pcr_primer_p2>AGTCTGTGTGGTCGTGACAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCAGACATTTCAATGATAAGATCGTAGATCTGACGGGCCAATTCTCTCTGAAAAACTTTTTTTTTTGCAATTTTCAGTAAAATAAGACTTACCGAAGGAACAATGATGAGTCCGAAAGGTCCCTCGTTTCTCATAAATGGGAGTTTCACCTCTTGTTCGATACAGAACATGATCAACGGCAAAACAAACGTCATTGTTTTACCGGAACCTGTTGAAGCGATGCCAATCATGTCACGACCACACAGACT</canonical_amplicon>
		<polymorphic_amplicon>CTTCAGACATTTCAATGATAAGATCGTAGATCTGACGGGCCAATTCTCTCTGAAAAACTTTTTTTTTTGCAATTTTCAGTAAAATAAGACTTACCGAAGGAACAATGATGAGTCCGAAAGGTCCCTCGTTTCTCATAAATGGGAGTTTCACCTCTTGTTCGATACAGAACATGATCAACGGCAAAACRAACGTCATTGTTTTACCGGAACCTGTTGAAGCGATGCCAATCATGTCACGACCACACAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1184</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>416915</contig_pos>
        <strand></strand>
        <context>TATTTTCAGC[A/T]CTAAAATTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGAATGCAAAGTAAAAGACAATTTTCAGCTCAAAAAACACTATTTTCAGC</left_flank>
        <right_flank>CTAAAATTCCAAATTTTCAGCCTAAAAATTCAAATTTTCAGCTTATAAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAGATCTGACGGGCCAATTCTCTCTGAAAAACTTTTTTTTTTGCAATTTTCAGTAAAATAAGACTTACCGAAGGAACAATGATGAGTCCGAAAGGTCCCTCGTTTCTCATAAATGGGAGTTTCACCTCTTGTTCGATACAGAACATGATCAACGGCAAAACAAACGTCATTGTTTTACCGGAACCTGTTGAAGCGATGCCAATCATGTCACGACCACACAGACTGGAATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAAAAACACTATTTTCAGCACTAAAATTCCAAATTTTCAGCCTAAAAATTCAAATTTTCAGCTTATAAAACCCAAATTTTTAGCAAAAATTATTTTTTAACCTCAAAAATAGCTGCTTTCAGCTCAAAACCCCGCTCAAAAGAAGCTTTTTTCCGGTCGAAAAATCTCGATTAAAGGCCACAAATGCCTTATTTTCAGTCTAAAAATCATAATTTTTAGCTCAAAAATTGTCGGTTTTTAGCTAAAAAGTCAAAATTTCCAGCTATTTCCCGATCAAATACTTACGCAACAGGTATTCCTTGAATCTGAATCGCCGTCGGCGTGACGATTCCCTTCTGTTTTTGAAGAAATTGCAGCAATGGTTTCGGGAACTTCATCTCGAGGAAACTTCCAATTGGTGGTGGAATTGTTTCTCCTTCACAACTGATTCCCAACCGTTTTCTCTGATTTTCGTAATCTGTTTGAGTCTGACGGCGGATGTGGCCTGGTGGACGCCATCTGAAAAATATTTATGAATTTT</canonical>
            <polymorphic>GTAGATCTGACGGGCCAATTCTCTCTGAAAAACTTTTTTTTTTGCAATTTTCAGTAAAATAAGACTTACCGAAGGAACAATGATGAGTCCGAAAGGTCCCTCGTTTCTCATAAATGGGAGTTTCACCTCTTGTTCGATACAGAACATGATCAACGGCAAAACAAACGTCATTGTTTTACCGGAACCTGTTGAAGCGATGCCAATCATGTCACGACCACACAGACTGGAATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAAAAACACTATTTTCAGCWCTAAAATTCCAAATTTTCAGCCTAAAAATTCAAATTTTCAGCTTATAAAACCCAAATTTTTAGCAAAAATTATTTTTTAACCTCAAAAATAGCTGCTTTCAGCTCAAAACCCCGCTCAAAAGAAGCTTTTTTCCGGTCGAAAAATCTCGATTAAAGGCCACAAATGCCTTATTTTCAGTCTAAAAATCATAATTTTTAGCTCAAAAATTGTCGGTTTTTAGCTAAAAAGTCAAAATTTCCAGCTATTTCCCGATCAAATACTTACGCAACAGGTATTCCTTGAATCTGAATCGCCGTCGGCGTGACGATTCCCTTCTGTTTTTGAAGAAATTGCAGCAATGGTTTCGGGAACTTCATCTCGAGGAAACTTCCAATTGGTGGTGGAATTGTTTCTCCTTCACAACTGATTCCCAACCGTTTTCTCTGATTTTCGTAATCTGTTTGAGTCTGACGGCGGATGTGGCCTGGTGGACGCCATCTGAAAAATATTTATGAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>160 144 125 108 96 86 76 62 57 30 17 12 8 8 6 3 2</canonical_bands>
                <polymorphic_bands>172 144 125 108 96 86 76 62 57 30 17 8 8 6 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGAATAAGAATTCCGGCTAT</pcr_primer_p1>
		<pcr_primer_p2>TTGCTAAAAATTTGGGTTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>339</pcr_amplicon_size>
		<canonical_amplicon>AATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAAAAACACTATTTTCAGCACTAAAATTCCAAATTTTCAGCCTAAAAATTCAAATTTTCAGCTTATAAAACCCAAATTTTTAGCAA</canonical_amplicon>
		<polymorphic_amplicon>AATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAAAAACACTATTTTCAGCWCTAAAATTCCAAATTTTCAGCCTAAAAATTCAAATTTTCAGCTTATAAAACCCAAATTTTTAGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1185</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>420038</contig_pos>
        <strand>+</strand>
        <context>TACCCGTTTW[A/T]AAAATATGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCGATTTTTCTGATTTTTCTGTTGTCTGCTCATTACCTATACCCGTTTT</left_flank>
        <right_flank>AAAATATGTATATCGAGTTTGTTTTTACGTGATCCTTTAACTTTCTTCAC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGTGTTGGTTCTTGTTTAGGCACCAGGATCTTTTAACATTTTACTTTGCTACAGAATCAAATAATCACAGGAACAGAAACGTCAATTTTATTTATGTTATTCAGGTTTTTGATAAATTCGGTTGAAAAAATTGTATATTGTATACTGTATATTTTGTATACAAAATTTATAAAAACTGTTTATTTTCACTGTATAATTTTACACCGGATACATTAGCTTTTATGAACGGTGAACAATAGTTCCAAAATTTACATTATTTCTTATCAGGTCATCAAATAAAATCGGACAAAAAATTTGGAACGCTTCACGAATTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATTGTTCCAATTTTAGTTGATGTAAGTCGGCAAAATCAATGTGATGAGACTTCTTGAAAAGTGTCCAATTGTCAGGTATTCTGAAAATTCCTTTCGATTTTTCTGATTTTTCTGTTGTCTGCTCATTACCTATACCCGTTTTTAAAATATGTATATCGAGTTTGTTTTTACGTGATCCTTTAACTTTCTTCACTTCACTGATGCTAGTCTGGTTTTCCGTAACCTCCGTGAAGTTTTACCAATATGAGAGCAAATTTGAAGATCTGGAAAAATGGAAATAAATTAGTACTCAGTTTACAACGTTCAAGTTTAGGAACTTCCTGGCTTCGAGCGAAAACTACTCCAATGTCTTCCGACGACTCCACTCTAAGGACCCCGAGGACTTTTCGATTTCAAATGGTAAGGAATATGGATTGAAAGGTGAGGAAGTTTTGATTTTAAAGTTTTCGAAGTTAGACTTTTTTTGATGAAATTTGCTAACTGCGATGTCTTAACAAAAGGTTGAACGAGTTACGATGAATAAACTTTATTATTTTGAACCAAGAACCAATTTAAGGCGCTCATCACCAACTTCACCGACAACGACGACTTGACCAATGGCTAAAGAAAATCTCTGATGAGGTATCCAAAATGAAAAAAAATT</canonical>
            <polymorphic>ACAGTGTTGGTTCTTGTTTAGGCACCAGGATCTTTTAACATTTTACTTTGCTACAGAATCAAATAATCACAGGAACAGAAACGTCAATTTTATTTATGTTATTCAGGTTTTTGATAAATTCGGTTGAAAAAATTGTATATTGTATACTGTATATTTTGTATACAAAATTTATAAAAACTGTTTATTTTCACTGTATAATTTTACACCGGATACATTAGCTTTTATGAACGGTGAACAATAGTTCCAAAATTTACATTATTTCTTATCAGGTCATCAAATAAAATCGGACAAAAAATTTGGAACGCTTCACGAATTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATTGTTCCAATTTTAGTTGATGTAAGTCGGCAAAATCAATGTGATGAGACTTCTTGAAAAGTGTCCAATTGTCAGGTATTCTGAAAATTCCTTTCGATTTTTCTGATTTTTCTGTTGTCTGCTCATTACCTATACCCGTTTTWAAAATATGTATATCGAGTTTGTTTTTACGTGATCCTTTAACTTTCTTCACTTCACTGATGCTAGTCTGGTTTTCCGTAACCTCCGTGAAGTTTTACCAATATGAGAGCAAATTTGAAGATCTGGAAAAATGGAAATAAATTAGTACTCAGTTTACAACGTTCAAGTTTAGGAACTTCCTGGCTTCGAGCGAAAACTACTCCAATGTCTTCCGACGACTCCACTCTAAGGACCCCGAGGACTTTTCGATTTCAAATGGTAAGGAATATGGATTGAAAGGTGAGGAAGTTTTGATTTTAAAGTTTTCGAAGTTAGACTTTTTTTGATGAAATTTGCTAACTGCGATGTCTTAACAAAAGGTTGAACGAGTTACGATGAATAAACTTTATTATTTTGAACCAAGAACCAATTTAAGGCGCTCATCACCAACTTCACCGACAACGACGACTTGACCAATGGCTAAAGAAAATCTCTGATGAGGTATCCAAAATGAAAAAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 296 204</canonical_bands>
                <polymorphic_bands>796 204</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>464 258 91 61 53 38 35</canonical_bands>
                <polymorphic_bands>502 258 91 61 53 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATGCTAATCTTCTCTGTATTG</pcr_primer_p1>
		<pcr_primer_p2>GGAAAACCAGACTAGCATCA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CCATGCTAATCTTCTCTGTATTGTTCCAATTTTAGTTGATGTAAGTCGGCAAAATCAATGTGATGAGACTTCTTGAAAAGTGTCCAATTGTCAGGTATTCTGAAAATTCCTTTCGATTTTTCTGATTTTTCTGTTGTCTGCTCATTACCTATACCCGTTTTTAAAATATGTATATCGAGTTTGTTTTTACGTGATCCTTTAACTTTCTTCACTTCACTGATGCTAGTCTGGTTTTCC</canonical_amplicon>
		<polymorphic_amplicon>CCATGCTAATCTTCTCTGTATTGTTCCAATTTTAGTTGATGTAAGTCGGCAAAATCAATGTGATGAGACTTCTTGAAAAGTGTCCAATTGTCAGGTATTCTGAAAATTCCTTTCGATTTTTCTGATTTTTCTGTTGTCTGCTCATTACCTATACCCGTTTTWAAAATATGTATATCGAGTTTGTTTTTACGTGATCCTTTAACTTTCTTCACTTCACTGATGCTAGTCTGGTTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1186</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>420037</contig_pos>
        <strand>+</strand>
        <context>ATACCCGTTT[A/T]WAAAATATGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCGATTTTTCTGATTTTTCTGTTGTCTGCTCATTACCTATACCCGTTT</left_flank>
        <right_flank>TAAAATATGTATATCGAGTTTGTTTTTACGTGATCCTTTAACTTTCTTCA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAGTGTTGGTTCTTGTTTAGGCACCAGGATCTTTTAACATTTTACTTTGCTACAGAATCAAATAATCACAGGAACAGAAACGTCAATTTTATTTATGTTATTCAGGTTTTTGATAAATTCGGTTGAAAAAATTGTATATTGTATACTGTATATTTTGTATACAAAATTTATAAAAACTGTTTATTTTCACTGTATAATTTTACACCGGATACATTAGCTTTTATGAACGGTGAACAATAGTTCCAAAATTTACATTATTTCTTATCAGGTCATCAAATAAAATCGGACAAAAAATTTGGAACGCTTCACGAATTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATTGTTCCAATTTTAGTTGATGTAAGTCGGCAAAATCAATGTGATGAGACTTCTTGAAAAGTGTCCAATTGTCAGGTATTCTGAAAATTCCTTTCGATTTTTCTGATTTTTCTGTTGTCTGCTCATTACCTATACCCGTTTTTAAAATATGTATATCGAGTTTGTTTTTACGTGATCCTTTAACTTTCTTCACTTCACTGATGCTAGTCTGGTTTTCCGTAACCTCCGTGAAGTTTTACCAATATGAGAGCAAATTTGAAGATCTGGAAAAATGGAAATAAATTAGTACTCAGTTTACAACGTTCAAGTTTAGGAACTTCCTGGCTTCGAGCGAAAACTACTCCAATGTCTTCCGACGACTCCACTCTAAGGACCCCGAGGACTTTTCGATTTCAAATGGTAAGGAATATGGATTGAAAGGTGAGGAAGTTTTGATTTTAAAGTTTTCGAAGTTAGACTTTTTTTGATGAAATTTGCTAACTGCGATGTCTTAACAAAAGGTTGAACGAGTTACGATGAATAAACTTTATTATTTTGAACCAAGAACCAATTTAAGGCGCTCATCACCAACTTCACCGACAACGACGACTTGACCAATGGCTAAAGAAAATCTCTGATGAGGTATCCAAAATGAAAAAAAAT</canonical>
            <polymorphic>AACAGTGTTGGTTCTTGTTTAGGCACCAGGATCTTTTAACATTTTACTTTGCTACAGAATCAAATAATCACAGGAACAGAAACGTCAATTTTATTTATGTTATTCAGGTTTTTGATAAATTCGGTTGAAAAAATTGTATATTGTATACTGTATATTTTGTATACAAAATTTATAAAAACTGTTTATTTTCACTGTATAATTTTACACCGGATACATTAGCTTTTATGAACGGTGAACAATAGTTCCAAAATTTACATTATTTCTTATCAGGTCATCAAATAAAATCGGACAAAAAATTTGGAACGCTTCACGAATTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATTGTTCCAATTTTAGTTGATGTAAGTCGGCAAAATCAATGTGATGAGACTTCTTGAAAAGTGTCCAATTGTCAGGTATTCTGAAAATTCCTTTCGATTTTTCTGATTTTTCTGTTGTCTGCTCATTACCTATACCCGTTTWTAAAATATGTATATCGAGTTTGTTTTTACGTGATCCTTTAACTTTCTTCACTTCACTGATGCTAGTCTGGTTTTCCGTAACCTCCGTGAAGTTTTACCAATATGAGAGCAAATTTGAAGATCTGGAAAAATGGAAATAAATTAGTACTCAGTTTACAACGTTCAAGTTTAGGAACTTCCTGGCTTCGAGCGAAAACTACTCCAATGTCTTCCGACGACTCCACTCTAAGGACCCCGAGGACTTTTCGATTTCAAATGGTAAGGAATATGGATTGAAAGGTGAGGAAGTTTTGATTTTAAAGTTTTCGAAGTTAGACTTTTTTTGATGAAATTTGCTAACTGCGATGTCTTAACAAAAGGTTGAACGAGTTACGATGAATAAACTTTATTATTTTGAACCAAGAACCAATTTAAGGCGCTCATCACCAACTTCACCGACAACGACGACTTGACCAATGGCTAAAGAAAATCTCTGATGAGGTATCCAAAATGAAAAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 296 203</canonical_bands>
                <polymorphic_bands>797 203</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>464 258 90 61 53 38 36</canonical_bands>
                <polymorphic_bands>502 258 90 61 53 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATGCTAATCTTCTCTGTATTG</pcr_primer_p1>
		<pcr_primer_p2>GGAAAACCAGACTAGCATCA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CCATGCTAATCTTCTCTGTATTGTTCCAATTTTAGTTGATGTAAGTCGGCAAAATCAATGTGATGAGACTTCTTGAAAAGTGTCCAATTGTCAGGTATTCTGAAAATTCCTTTCGATTTTTCTGATTTTTCTGTTGTCTGCTCATTACCTATACCCGTTTTTAAAATATGTATATCGAGTTTGTTTTTACGTGATCCTTTAACTTTCTTCACTTCACTGATGCTAGTCTGGTTTTCC</canonical_amplicon>
		<polymorphic_amplicon>CCATGCTAATCTTCTCTGTATTGTTCCAATTTTAGTTGATGTAAGTCGGCAAAATCAATGTGATGAGACTTCTTGAAAAGTGTCCAATTGTCAGGTATTCTGAAAATTCCTTTCGATTTTTCTGATTTTTCTGTTGTCTGCTCATTACCTATACCCGTTTWTAAAATATGTATATCGAGTTTGTTTTTACGTGATCCTTTAACTTTCTTCACTTCACTGATGCTAGTCTGGTTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1187</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>419926</contig_pos>
        <strand>+</strand>
        <context>TGTAAGTCGG[C/T]AAAATCAATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCATGCTAATCTTCTCTGTATTGTTCCAATTTTAGTTGATGTAAGTCGG</left_flank>
        <right_flank>AAAATCAATGTGATGAGACTTCTTGAAAAGTGTCCAATTGTCAGGTATTC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATAACTAATCAGTGATCGTGAAAGGCGCTGCAAGTGCGGAGTCCGTATGGAAGAGAGTTCAAAATATTATTCGAAACGATCAGGCTAGATATCGCCAAATGAAACCCAAAACAGTGTTGGTTCTTGTTTAGGCACCAGGATCTTTTAACATTTTACTTTGCTACAGAATCAAATAATCACAGGAACAGAAACGTCAATTTTATTTATGTTATTCAGGTTTTTGATAAATTCGGTTGAAAAAATTGTATATTGTATACTGTATATTTTGTATACAAAATTTATAAAAACTGTTTATTTTCACTGTATAATTTTACACCGGATACATTAGCTTTTATGAACGGTGAACAATAGTTCCAAAATTTACATTATTTCTTATCAGGTCATCAAATAAAATCGGACAAAAAATTTGGAACGCTTCACGAATTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATTGTTCCAATTTTAGTTGATGTAAGTCGGCAAAATCAATGTGATGAGACTTCTTGAAAAGTGTCCAATTGTCAGGTATTCTGAAAATTCCTTTCGATTTTTCTGATTTTTCTGTTGTCTGCTCATTACCTATACCCGTTTTTAAAATATGTATATCGAGTTTGTTTTTACGTGATCCTTTAACTTTCTTCACTTCACTGATGCTAGTCTGGTTTTCCGTAACCTCCGTGAAGTTTTACCAATATGAGAGCAAATTTGAAGATCTGGAAAAATGGAAATAAATTAGTACTCAGTTTACAACGTTCAAGTTTAGGAACTTCCTGGCTTCGAGCGAAAACTACTCCAATGTCTTCCGACGACTCCACTCTAAGGACCCCGAGGACTTTTCGATTTCAAATGGTAAGGAATATGGATTGAAAGGTGAGGAAGTTTTGATTTTAAAGTTTTCGAAGTTAGACTTTTTTTGATGAAATTTGCTAACTGCGATGTCTTAACAAAAGGTTGAACGAGTTACGATGAATAAACTTTATT</canonical>
            <polymorphic>CAATAACTAATCAGTGATCGTGAAAGGCGCTGCAAGTGCGGAGTCCGTATGGAAGAGAGTTCAAAATATTATTCGAAACGATCAGGCTAGATATCGCCAAATGAAACCCAAAACAGTGTTGGTTCTTGTTTAGGCACCAGGATCTTTTAACATTTTACTTTGCTACAGAATCAAATAATCACAGGAACAGAAACGTCAATTTTATTTATGTTATTCAGGTTTTTGATAAATTCGGTTGAAAAAATTGTATATTGTATACTGTATATTTTGTATACAAAATTTATAAAAACTGTTTATTTTCACTGTATAATTTTACACCGGATACATTAGCTTTTATGAACGGTGAACAATAGTTCCAAAATTTACATTATTTCTTATCAGGTCATCAAATAAAATCGGACAAAAAATTTGGAACGCTTCACGAATTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATTGTTCCAATTTTAGTTGATGTAAGTCGGYAAAATCAATGTGATGAGACTTCTTGAAAAGTGTCCAATTGTCAGGTATTCTGAAAATTCCTTTCGATTTTTCTGATTTTTCTGTTGTCTGCTCATTACCTATACCCGTTTTTAAAATATGTATATCGAGTTTGTTTTTACGTGATCCTTTAACTTTCTTCACTTCACTGATGCTAGTCTGGTTTTCCGTAACCTCCGTGAAGTTTTACCAATATGAGAGCAAATTTGAAGATCTGGAAAAATGGAAATAAATTAGTACTCAGTTTACAACGTTCAAGTTTAGGAACTTCCTGGCTTCGAGCGAAAACTACTCCAATGTCTTCCGACGACTCCACTCTAAGGACCCCGAGGACTTTTCGATTTCAAATGGTAAGGAATATGGATTGAAAGGTGAGGAAGTTTTGATTTTAAAGTTTTCGAAGTTAGACTTTTTTTGATGAAATTTGCTAACTGCGATGTCTTAACAAAAGGTTGAACGAGTTACGATGAATAAACTTTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAACAATAGTTCCAAAATTTACA</pcr_primer_p1>
		<pcr_primer_p2>AGACAACAGAAAAATCAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TGAACAATAGTTCCAAAATTTACATTATTTCTTATCAGGTCATCAAATAAAATCGGACAAAAAATTTGGAACGCTTCACGAATTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATTGTTCCAATTTTAGTTGATGTAAGTCGGCAAAATCAATGTGATGAGACTTCTTGAAAAGTGTCCAATTGTCAGGTATTCTGAAAATTCCTTTCGATTTTTCTGATTTTTCTGTTGTCT</canonical_amplicon>
		<polymorphic_amplicon>TGAACAATAGTTCCAAAATTTACATTATTTCTTATCAGGTCATCAAATAAAATCGGACAAAAAATTTGGAACGCTTCACGAATTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATTGTTCCAATTTTAGTTGATGTAAGTCGGYAAAATCAATGTGATGAGACTTCTTGAAAAGTGTCCAATTGTCAGGTATTCTGAAAATTCCTTTCGATTTTTCTGATTTTTCTGTTGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1188</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>448786</contig_pos>
        <strand>+</strand>
        <context>GTTGATAGCT[A/G]CCGATCTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTAAGTTGACTTGGTTTTTTAGAATTAATAGCAAGACGTTGATAGCT</left_flank>
        <right_flank>CCGATCTTTTACTATCAATATAGTTTCAGAATTTCAGAATCCTAGAATCT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGAGAACGAAATGAGATACGGTAGATTTTTTGAAATGGGTCATAGCTGGGAATCGAAGTGTCTCAAAAGTATCGTTTTGATGGGAAATTGAAAGCATTTTGAGACGGTTTTTGTTGAAATTGATAGTTGACCCGGGGAAAGATTGAAAATCACAGTAGTTTGTCGAAGTTTTTGAAACAGGCAAGGTGATGATTTGGAGGGGAAAAAAGAATAAATAAGGGAGGATAAATAGATATATACATATAGATAGATAGATGGGAGCTAAATAAAATTGTAAAATGAACGATTTTTACGGCCATGGCCAATATGGTTTTGTCAGCATCACTTGCTTATTTCGCTGAGTTTTTGTGTGATCCTCATCTGAAGTTAGACTTCGGCGACGGTGTTTGTGGCGAATGTGGTGCTGAAAAAATGTTTATAAAATAATGAGATTTCGAGATTAAAAACATTTTTAAGTTGACTTGGTTTTTTAGAATTAATAGCAAGACGTTGATAGCTGCCGATCTTTTACTATCAATATAGTTTCAGAATTTCAGAATCCTAGAATCTAATAATCTCCCAATCAAATCAATGTAATCAAACGTTGAATTTATGAAACCCAGTTCAAAAATACTGATCCTTTTCCCATAGATACCGTAAAACTTGTAATAGAAGCCCCCCCCCCCTCCTAACTTTCAGTTTTGAGCAAATTTATCTCGTTTCCTGTTATTGATACAGAAAAGTTTCCAATTGATAAATTGTTTATCCTATAAGAAGGAGCGATTTTCAAAATTTTCAATTTTCATCCCAGATCACTTCGATTTCCAAAATTTCTGTGAAGTTTCAGTAAAATCACGTGAATTTCCAAAATCCCAGAACTCGAACCGTTCGAGTTCTGTGAAAAATCCCAGAAATTGCAACGTTCAATTTCTGTGAATCACGTAAAATTTCCAAATTCCCAGAAATTTTGGAAATCGAAGTGATTTGGGATGAAAATTGAAAATTTTGAAAATCGCTCCT</canonical>
            <polymorphic>GGGAGAACGAAATGAGATACGGTAGATTTTTTGAAATGGGTCATAGCTGGGAATCGAAGTGTCTCAAAAGTATCGTTTTGATGGGAAATTGAAAGCATTTTGAGACGGTTTTTGTTGAAATTGATAGTTGACCCGGGGAAAGATTGAAAATCACAGTAGTTTGTCGAAGTTTTTGAAACAGGCAAGGTGATGATTTGGAGGGGAAAAAAGAATAAATAAGGGAGGATAAATAGATATATACATATAGATAGATAGATGGGAGCTAAATAAAATTGTAAAATGAACGATTTTTACGGCCATGGCCAATATGGTTTTGTCAGCATCACTTGCTTATTTCGCTGAGTTTTTGTGTGATCCTCATCTGAAGTTAGACTTCGGCGACGGTGTTTGTGGCGAATGTGGTGCTGAAAAAATGTTTATAAAATAATGAGATTTCGAGATTAAAAACATTTTTAAGTTGACTTGGTTTTTTAGAATTAATAGCAAGACGTTGATAGCTRCCGATCTTTTACTATCAATATAGTTTCAGAATTTCAGAATCCTAGAATCTAATAATCTCCCAATCAAATCAATGTAATCAAACGTTGAATTTATGAAACCCAGTTCAAAAATACTGATCCTTTTCCCATAGATACCGTAAAACTTGTAATAGAAGCCCCCCCCCCCTCCTAACTTTCAGTTTTGAGCAAATTTATCTCGTTTCCTGTTATTGATACAGAAAAGTTTCCAATTGATAAATTGTTTATCCTATAAGAAGGAGCGATTTTCAAAATTTTCAATTTTCATCCCAGATCACTTCGATTTCCAAAATTTCTGTGAAGTTTCAGTAAAATCACGTGAATTTCCAAAATCCCAGAACTCGAACCGTTCGAGTTCTGTGAAAAATCCCAGAAATTGCAACGTTCAATTTCTGTGAATCACGTAAAATTTCCAAATTCCCAGAAATTTTGGAAATCGAAGTGATTTGGGATGAAAATTGAAAATTTTGAAAATCGCTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTTTTGTGTGATCCTCATCT</pcr_primer_p1>
		<pcr_primer_p2>ATTCAACGTTTGATTACATTGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGTTTTTGTGTGATCCTCATCTGAAGTTAGACTTCGGCGACGGTGTTTGTGGCGAATGTGGTGCTGAAAAAATGTTTATAAAATAATGAGATTTCGAGATTAAAAACATTTTTAAGTTGACTTGGTTTTTTAGAATTAATAGCAAGACGTTGATAGCTGCCGATCTTTTACTATCAATATAGTTTCAGAATTTCAGAATCCTAGAATCTAATAATCTCCCAATCAAATCAATGTAATCAAACGTTGAAT</canonical_amplicon>
		<polymorphic_amplicon>AGTTTTTGTGTGATCCTCATCTGAAGTTAGACTTCGGCGACGGTGTTTGTGGCGAATGTGGTGCTGAAAAAATGTTTATAAAATAATGAGATTTCGAGATTAAAAACATTTTTAAGTTGACTTGGTTTTTTAGAATTAATAGCAAGACGTTGATAGCTRCCGATCTTTTACTATCAATATAGTTTCAGAATTTCAGAATCCTAGAATCTAATAATCTCCCAATCAAATCAATGTAATCAAACGTTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1189</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>448834</contig_pos>
        <strand>+</strand>
        <context>AATCCTAGAA[C/T]CTAATAATCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGCCGATCTTTTACTATCAATATAGTTTCAGAATTTCAGAATCCTAGAA</left_flank>
        <right_flank>CTAATAATCTCCCAATCAAATCAATGTAATCAAACGTTGAATTTATGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGAATCGAAGTGTCTCAAAAGTATCGTTTTGATGGGAAATTGAAAGCATTTTGAGACGGTTTTTGTTGAAATTGATAGTTGACCCGGGGAAAGATTGAAAATCACAGTAGTTTGTCGAAGTTTTTGAAACAGGCAAGGTGATGATTTGGAGGGGAAAAAAGAATAAATAAGGGAGGATAAATAGATATATACATATAGATAGATAGATGGGAGCTAAATAAAATTGTAAAATGAACGATTTTTACGGCCATGGCCAATATGGTTTTGTCAGCATCACTTGCTTATTTCGCTGAGTTTTTGTGTGATCCTCATCTGAAGTTAGACTTCGGCGACGGTGTTTGTGGCGAATGTGGTGCTGAAAAAATGTTTATAAAATAATGAGATTTCGAGATTAAAAACATTTTTAAGTTGACTTGGTTTTTTAGAATTAATAGCAAGACGTTGATAGCTGCCGATCTTTTACTATCAATATAGTTTCAGAATTTCAGAATCCTAGAATCTAATAATCTCCCAATCAAATCAATGTAATCAAACGTTGAATTTATGAAACCCAGTTCAAAAATACTGATCCTTTTCCCATAGATACCGTAAAACTTGTAATAGAAGCCCCCCCCCCCTCCTAACTTTCAGTTTTGAGCAAATTTATCTCGTTTCCTGTTATTGATACAGAAAAGTTTCCAATTGATAAATTGTTTATCCTATAAGAAGGAGCGATTTTCAAAATTTTCAATTTTCATCCCAGATCACTTCGATTTCCAAAATTTCTGTGAAGTTTCAGTAAAATCACGTGAATTTCCAAAATCCCAGAACTCGAACCGTTCGAGTTCTGTGAAAAATCCCAGAAATTGCAACGTTCAATTTCTGTGAATCACGTAAAATTTCCAAATTCCCAGAAATTTTGGAAATCGAAGTGATTTGGGATGAAAATTGAAAATTTTGAAAATCGCTCCTTCTTATATTATCGAAAATGTATTGTCAGTTGACACATTTTGGTTATCT</canonical>
            <polymorphic>GGGAATCGAAGTGTCTCAAAAGTATCGTTTTGATGGGAAATTGAAAGCATTTTGAGACGGTTTTTGTTGAAATTGATAGTTGACCCGGGGAAAGATTGAAAATCACAGTAGTTTGTCGAAGTTTTTGAAACAGGCAAGGTGATGATTTGGAGGGGAAAAAAGAATAAATAAGGGAGGATAAATAGATATATACATATAGATAGATAGATGGGAGCTAAATAAAATTGTAAAATGAACGATTTTTACGGCCATGGCCAATATGGTTTTGTCAGCATCACTTGCTTATTTCGCTGAGTTTTTGTGTGATCCTCATCTGAAGTTAGACTTCGGCGACGGTGTTTGTGGCGAATGTGGTGCTGAAAAAATGTTTATAAAATAATGAGATTTCGAGATTAAAAACATTTTTAAGTTGACTTGGTTTTTTAGAATTAATAGCAAGACGTTGATAGCTGCCGATCTTTTACTATCAATATAGTTTCAGAATTTCAGAATCCTAGAAYCTAATAATCTCCCAATCAAATCAATGTAATCAAACGTTGAATTTATGAAACCCAGTTCAAAAATACTGATCCTTTTCCCATAGATACCGTAAAACTTGTAATAGAAGCCCCCCCCCCCTCCTAACTTTCAGTTTTGAGCAAATTTATCTCGTTTCCTGTTATTGATACAGAAAAGTTTCCAATTGATAAATTGTTTATCCTATAAGAAGGAGCGATTTTCAAAATTTTCAATTTTCATCCCAGATCACTTCGATTTCCAAAATTTCTGTGAAGTTTCAGTAAAATCACGTGAATTTCCAAAATCCCAGAACTCGAACCGTTCGAGTTCTGTGAAAAATCCCAGAAATTGCAACGTTCAATTTCTGTGAATCACGTAAAATTTCCAAATTCCCAGAAATTTTGGAAATCGAAGTGATTTGGGATGAAAATTGAAAATTTTGAAAATCGCTCCTTCTTATATTATCGAAAATGTATTGTCAGTTGACACATTTTGGTTATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>486 370 133 8 3</canonical_bands>
                <polymorphic_bands>486 378 133 3</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>486 370 133 8 3</canonical_bands>
                <polymorphic_bands>486 378 133 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGATCCTCATCTGAAGTTAGAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAACTGGGTTTCATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>GTGATCCTCATCTGAAGTTAGACTTCGGCGACGGTGTTTGTGGCGAATGTGGTGCTGAAAAAATGTTTATAAAATAATGAGATTTCGAGATTAAAAACATTTTTAAGTTGACTTGGTTTTTTAGAATTAATAGCAAGACGTTGATAGCTGCCGATCTTTTACTATCAATATAGTTTCAGAATTTCAGAATCCTAGAATCTAATAATCTCCCAATCAAATCAATGTAATCAAACGTTGAATTTATGAAACCCAGTTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTGATCCTCATCTGAAGTTAGACTTCGGCGACGGTGTTTGTGGCGAATGTGGTGCTGAAAAAATGTTTATAAAATAATGAGATTTCGAGATTAAAAACATTTTTAAGTTGACTTGGTTTTTTAGAATTAATAGCAAGACGTTGATAGCTGCCGATCTTTTACTATCAATATAGTTTCAGAATTTCAGAATCCTAGAAYCTAATAATCTCCCAATCAAATCAATGTAATCAAACGTTGAATTTATGAAACCCAGTTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1190</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>450879</contig_pos>
        <strand>+</strand>
        <context>GTTTGGATAA[G/T]TGGTTTTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATACCCGTCTTTATCAGTCTATGTAATTGTGCGCCTCTCGGTTTGGATAA</left_flank>
        <right_flank>TGGTTTTCAATTATGATTAAACAAAAATCCGAAGACACAAAAAATAACCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATGTGTCTGTTTAATTCAAGGACAATTGTCTGGGATTACTTTTTTTGGGAATAGTACCTGATCTTTAAAGTCTTCCAAACATCACAGAAAACCTAAAACCACAGGCTCTAAGCTACAGGGCGCTTATATCCCCGGACTAAAGTTTGTACAAGCATACAATTTGAGTGAAGCGTTGTACTAGACTCAAATTTGGTGTGAGAAAATTCAAGAAATTCATCAGTAAACTGGCAAAATTTCGAATTATATTATTAACTTTGAGCTGAGCTATCACTTGTCGAAGTTGCTCCATTTTTTTATACAACGGAGGTCAAGGAACATTCATCTTTAGACGATTATAACAATACCTAGACTCAAGGAAAAACTTTGAAAATTCCAGTAGAGCTGGATCAAACGTAAAACTATATTTTTACAGATTTTCGTGCTTCCAAAATACTCGTGTCTAAAGATATACCCGTCTTTATCAGTCTATGTAATTGTGCGCCTCTCGGTTTGGATAATTGGTTTTCAATTATGATTAAACAAAAATCCGAAGACACAAAAAATAACCATCTTATGATTTGACCAAACCCTTGAAACTTTCAAGTTGAAACGGAAAAAAATTATTCAAAAACTCACCAGCAGTCATCCTTGAAACCCTGCATTCTGAATCGGAGTAGTTGTCGACTTTTCGGAATGAATGTTCTCTTTCCTTTTCGAAAAATGTTGCGTCGTCTGAGAAGAGGTGGAGGATAAAAAAGGTCAGATAGTGAATTTGACCTGAAAAAAAATGAAAATGTTCATCTCTCTTTATCCATTTCATCTGGGTCAGTGAGAAGAGACAGGATTACGGTAGAGGGACAAAAATGCCACGTCATCATCAAAGAGTAAAGATAAAGTCCCATAAATTATAATGTGATGATCGAAGGGAAAGGGGGAGAGAAAGTGAAACCGAGTAGATTGAAAGGAAAAGGGGAAAGCGTGCGAAATGTGGGCGGAGCCGGAGAGAGCGCTCTACGTGA</canonical>
            <polymorphic>GGATGTGTCTGTTTAATTCAAGGACAATTGTCTGGGATTACTTTTTTTGGGAATAGTACCTGATCTTTAAAGTCTTCCAAACATCACAGAAAACCTAAAACCACAGGCTCTAAGCTACAGGGCGCTTATATCCCCGGACTAAAGTTTGTACAAGCATACAATTTGAGTGAAGCGTTGTACTAGACTCAAATTTGGTGTGAGAAAATTCAAGAAATTCATCAGTAAACTGGCAAAATTTCGAATTATATTATTAACTTTGAGCTGAGCTATCACTTGTCGAAGTTGCTCCATTTTTTTATACAACGGAGGTCAAGGAACATTCATCTTTAGACGATTATAACAATACCTAGACTCAAGGAAAAACTTTGAAAATTCCAGTAGAGCTGGATCAAACGTAAAACTATATTTTTACAGATTTTCGTGCTTCCAAAATACTCGTGTCTAAAGATATACCCGTCTTTATCAGTCTATGTAATTGTGCGCCTCTCGGTTTGGATAAKTGGTTTTCAATTATGATTAAACAAAAATCCGAAGACACAAAAAATAACCATCTTATGATTTGACCAAACCCTTGAAACTTTCAAGTTGAAACGGAAAAAAATTATTCAAAAACTCACCAGCAGTCATCCTTGAAACCCTGCATTCTGAATCGGAGTAGTTGTCGACTTTTCGGAATGAATGTTCTCTTTCCTTTTCGAAAAATGTTGCGTCGTCTGAGAAGAGGTGGAGGATAAAAAAGGTCAGATAGTGAATTTGACCTGAAAAAAAATGAAAATGTTCATCTCTCTTTATCCATTTCATCTGGGTCAGTGAGAAGAGACAGGATTACGGTAGAGGGACAAAAATGCCACGTCATCATCAAAGAGTAAAGATAAAGTCCCATAAATTATAATGTGATGATCGAAGGGAAAGGGGGAGAGAAAGTGAAACCGAGTAGATTGAAAGGAAAAGGGGAAAGCGTGCGAAATGTGGGCGGAGCCGGAGAGAGCGCTCTACGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>151 134 134 130 116 103 91 29 24 21 15 14 11 11 9 7</canonical_bands>
                <polymorphic_bands>151 134 134 130 116 103 91 35 29 21 15 14 11 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACCACAGGCTCTAAGCTAC</pcr_primer_p1>
		<pcr_primer_p2>TTGGTCAAATCATAAGATGGTTA</pcr_primer_p2>
		<pcr_amplicon_size>470</pcr_amplicon_size>
		<canonical_amplicon>AAACCACAGGCTCTAAGCTACAGGGCGCTTATATCCCCGGACTAAAGTTTGTACAAGCATACAATTTGAGTGAAGCGTTGTACTAGACTCAAATTTGGTGTGAGAAAATTCAAGAAATTCATCAGTAAACTGGCAAAATTTCGAATTATATTATTAACTTTGAGCTGAGCTATCACTTGTCGAAGTTGCTCCATTTTTTTATACAACGGAGGTCAAGGAACATTCATCTTTAGACGATTATAACAATACCTAGACTCAAGGAAAAACTTTGAAAATTCCAGTAGAGCTGGATCAAACGTAAAACTATATTTTTACAGATTTTCGTGCTTCCAAAATACTCGTGTCTAAAGATATACCCGTCTTTATCAGTCTATGTAATTGTGCGCCTCTCGGTTTGGATAATTGGTTTTCAATTATGATTAAACAAAAATCCGAAGACACAAAAAATAACCATCTTATGATTTGACCAA</canonical_amplicon>
		<polymorphic_amplicon>AAACCACAGGCTCTAAGCTACAGGGCGCTTATATCCCCGGACTAAAGTTTGTACAAGCATACAATTTGAGTGAAGCGTTGTACTAGACTCAAATTTGGTGTGAGAAAATTCAAGAAATTCATCAGTAAACTGGCAAAATTTCGAATTATATTATTAACTTTGAGCTGAGCTATCACTTGTCGAAGTTGCTCCATTTTTTTATACAACGGAGGTCAAGGAACATTCATCTTTAGACGATTATAACAATACCTAGACTCAAGGAAAAACTTTGAAAATTCCAGTAGAGCTGGATCAAACGTAAAACTATATTTTTACAGATTTTCGTGCTTCCAAAATACTCGTGTCTAAAGATATACCCGTCTTTATCAGTCTATGTAATTGTGCGCCTCTCGGTTTGGATAAKTGGTTTTCAATTATGATTAAACAAAAATCCGAAGACACAAAAAATAACCATCTTATGATTTGACCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1191</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>479452</contig_pos>
        <strand>+</strand>
        <context>AGAACTCTTC[A/T]CCTACTATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGCCCAACTCTCAATTGAAGCGTCAACGACGTCATTAAGAAGAACTCTTC</left_flank>
        <right_flank>CCTACTATTTCATTTTTGTAATTCTCACCGCTTTCTATCTTCACCACCAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCATTTCGAGATCCTGCTCAAGTTGATATGAATATAGTTCTTGAAGTCTTATATAGGAACATGGCGATTCCTAACGATGAAATGTTAACTGTTGATACGCATAATAGGTTCTCTCCAGAGACTTTAGCTGCTGTGGAGCTGTTTCAAAAGGTGATTAAATATTTTTTCCAAAGCTGCAAGACTTGAAAAATACGTCTCAAATCTCTTATTCCTACTTATATGGTTTTCAGGCTCTTATCCATAAGACAACTCCATTGAGCACTTTGAGCTCCCCACTTCCGCTGTCTGCTGCTTTGCCTCCACCACCCCCTCCTCCACCACGACCGGATTCACTAGATCAATTTTTGGCCAACCAGGTAAGTACCTACACTTGCATTTTCATAAAATTCTCGAACATTTAAGGTGCAACGTCATAGGAAGCGTCAAAGAACGCCTACTCGAACATTGTCGCCCAACTCTCAATTGAAGCGTCAACGACGTCATTAAGAAGAACTCTTCTCCTACTATTTCATTTTTGTAATTCTCACCGCTTTCTATCTTCACCACCACCGCTTCATAATCGTTTTCTACTCTCATTTTTTCTAGCTTTTTGTACCTCTTATTCTCTCTAGTGAAACTGAAAACTTTGCCTTAAAAACCGGTCTTCAAAACTGAAAACGACTGCTGCAAAAACTTGAATATTTTCTTCGTTTCAGAGAGCACCCTCTTATTTACTCAGATTTATGGTACACCGGTTATCTCTCTTTCGCGTCTTTAATATTCATGAATTTTCAGCTTCTCGTTTCATGCCTTATAATATACTCGGCGTACTTTACCTATCGAAAGTAATACAACAATTTGTAGCGAGTCAGGGTTAACATCTCTTTTATCGTAGCCTCCTCTTCTCTATCGTTTTTGTACATAAAAACGCCATCATTTTTTCCTCGGATCTTATCTTTATAAGTCTCTATTATTATTATTATTATGTTGGCTACTTCTTTAGTCCTACTCCTAATCAAT</canonical>
            <polymorphic>AGCATTTCGAGATCCTGCTCAAGTTGATATGAATATAGTTCTTGAAGTCTTATATAGGAACATGGCGATTCCTAACGATGAAATGTTAACTGTTGATACGCATAATAGGTTCTCTCCAGAGACTTTAGCTGCTGTGGAGCTGTTTCAAAAGGTGATTAAATATTTTTTCCAAAGCTGCAAGACTTGAAAAATACGTCTCAAATCTCTTATTCCTACTTATATGGTTTTCAGGCTCTTATCCATAAGACAACTCCATTGAGCACTTTGAGCTCCCCACTTCCGCTGTCTGCTGCTTTGCCTCCACCACCCCCTCCTCCACCACGACCGGATTCACTAGATCAATTTTTGGCCAACCAGGTAAGTACCTACACTTGCATTTTCATAAAATTCTCGAACATTTAAGGTGCAACGTCATAGGAAGCGTCAAAGAACGCCTACTCGAACATTGTCGCCCAACTCTCAATTGAAGCGTCAACGACGTCATTAAGAAGAACTCTTCWCCTACTATTTCATTTTTGTAATTCTCACCGCTTTCTATCTTCACCACCACCGCTTCATAATCGTTTTCTACTCTCATTTTTTCTAGCTTTTTGTACCTCTTATTCTCTCTAGTGAAACTGAAAACTTTGCCTTAAAAACCGGTCTTCAAAACTGAAAACGACTGCTGCAAAAACTTGAATATTTTCTTCGTTTCAGAGAGCACCCTCTTATTTACTCAGATTTATGGTACACCGGTTATCTCTCTTTCGCGTCTTTAATATTCATGAATTTTCAGCTTCTCGTTTCATGCCTTATAATATACTCGGCGTACTTTACCTATCGAAAGTAATACAACAATTTGTAGCGAGTCAGGGTTAACATCTCTTTTATCGTAGCCTCCTCTTCTCTATCGTTTTTGTACATAAAAACGCCATCATTTTTTCCTCGGATCTTATCTTTATAAGTCTCTATTATTATTATTATTATGTTGGCTACTTCTTTAGTCCTACTCCTAATCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCTCGAACATTTAAGGTG</pcr_primer_p1>
		<pcr_primer_p2>GCAAAGTTTTCAGTTTCACTAGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAATTCTCGAACATTTAAGGTGCAACGTCATAGGAAGCGTCAAAGAACGCCTACTCGAACATTGTCGCCCAACTCTCAATTGAAGCGTCAACGACGTCATTAAGAAGAACTCTTCTCCTACTATTTCATTTTTGTAATTCTCACCGCTTTCTATCTTCACCACCACCGCTTCATAATCGTTTTCTACTCTCATTTTTTCTAGCTTTTTGTACCTCTTATTCTCTCTAGTGAAACTGAAAACTTTGC</canonical_amplicon>
		<polymorphic_amplicon>AAATTCTCGAACATTTAAGGTGCAACGTCATAGGAAGCGTCAAAGAACGCCTACTCGAACATTGTCGCCCAACTCTCAATTGAAGCGTCAACGACGTCATTAAGAAGAACTCTTCWCCTACTATTTCATTTTTGTAATTCTCACCGCTTTCTATCTTCACCACCACCGCTTCATAATCGTTTTCTACTCTCATTTTTTCTAGCTTTTTGTACCTCTTATTCTCTCTAGTGAAACTGAAAACTTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1192</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>496610</contig_pos>
        <strand>+</strand>
        <context>TTCTGAATAT[C/T]ATTCATTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATAT</left_flank>
        <right_flank>ATTCATTTGTGTACCTATCCCAATATAATGAATGATCTACCTGGCTGATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTAAAAATTTTATTAAAATTCACACGCATTTAAATGCGGCCGCGGGTGGAGTCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTAACCCGCCTAAATGGAAACCCTATTGGAGATTAATCGGATAATTTATTGATAACAGTTGATGGTAAAAGACATAAAATAGTCGATACGAAGATAGTGTTTCGAAAATGAGATTTCTTGAGAAACGAGACAAATTTGAAAAGAATAAAAAACATGGGTATGGAGAGGAATTCATCAATAAATTAGTAAATAGGAGATCCTCATACTTCTGGATTGTACTCATTTGATTGTGGGGATGCTCCTGAAATAATTTTCTTAATTACTTTCTAGAAGAAACTTCCAGACCATTTTGCTCCACCGGCACAGTGGTGTTATAAACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGGGATCTTCCAAATGCTCCGTCTCCGCTTTTGCCTGCTCAACTGTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATAGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACATAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAATTAACGTTTTTTCTCTAATCTAAGCCTACTCAAATTGTAACTTTAAGCACAATCATCTCA</canonical>
            <polymorphic>CCTTAAAAATTTTATTAAAATTCACACGCATTTAAATGCGGCCGCGGGTGGAGTCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTAACCCGCCTAAATGGAAACCCTATTGGAGATTAATCGGATAATTTATTGATAACAGTTGATGGTAAAAGACATAAAATAGTCGATACGAAGATAGTGTTTCGAAAATGAGATTTCTTGAGAAACGAGACAAATTTGAAAAGAATAAAAAACATGGGTATGGAGAGGAATTCATCAATAAATTAGTAAATAGGAGATCCTCATACTTCTGGATTGTACTCATTTGATTGTGGGGATGCTCCTGAAATAATTTTCTTAATTACTTTCTAGAAGAAACTTCCAGACCATTTTGCTCCACCGGCACAGTGGTGTTATAAACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATYATTCATTTGTGTACCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGGGATCTTCCAAATGCTCCGTCTCCGCTTTTGCCTGCTCAACTGTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATAGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACATAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAATTAACGTTTTTTCTCTAATCTAAGCCTACTCAAATTGTAACTTTAAGCACAATCATCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACATAATCTCCAATATCTTCCTC</pcr_primer_p1>
		<pcr_primer_p2>CCTATTATCAACAGGAAAATGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGG</canonical_amplicon>
		<polymorphic_amplicon>AACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATYATTCATTTGTGTACCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1193</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>496621</contig_pos>
        <strand>+</strand>
        <context>ATTCATTTGT[A/G]TAMCTATSMC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGT</left_flank>
        <right_flank>TACCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATTAAAATTCACACGCATTTAAATGCGGCCGCGGGTGGAGTCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTAACCCGCCTAAATGGAAACCCTATTGGAGATTAATCGGATAATTTATTGATAACAGTTGATGGTAAAAGACATAAAATAGTCGATACGAAGATAGTGTTTCGAAAATGAGATTTCTTGAGAAACGAGACAAATTTGAAAAGAATAAAAAACATGGGTATGGAGAGGAATTCATCAATAAATTAGTAAATAGGAGATCCTCATACTTCTGGATTGTACTCATTTGATTGTGGGGATGCTCCTGAAATAATTTTCTTAATTACTTTCTAGAAGAAACTTCCAGACCATTTTGCTCCACCGGCACAGTGGTGTTATAAACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGGGATCTTCCAAATGCTCCGTCTCCGCTTTTGCCTGCTCAACTGTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATAGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACATAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAATTAACGTTTTTTCTCTAATCTAAGCCTACTCAAATTGTAACTTTAAGCACAATCATCTCAATTTCCATGAA</canonical>
            <polymorphic>TTATTAAAATTCACACGCATTTAAATGCGGCCGCGGGTGGAGTCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTAACCCGCCTAAATGGAAACCCTATTGGAGATTAATCGGATAATTTATTGATAACAGTTGATGGTAAAAGACATAAAATAGTCGATACGAAGATAGTGTTTCGAAAATGAGATTTCTTGAGAAACGAGACAAATTTGAAAAGAATAAAAAACATGGGTATGGAGAGGAATTCATCAATAAATTAGTAAATAGGAGATCCTCATACTTCTGGATTGTACTCATTTGATTGTGGGGATGCTCCTGAAATAATTTTCTTAATTACTTTCTAGAAGAAACTTCCAGACCATTTTGCTCCACCGGCACAGTGGTGTTATAAACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTRTACCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGGGATCTTCCAAATGCTCCGTCTCCGCTTTTGCCTGCTCAACTGTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATAGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACATAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAATTAACGTTTTTTCTCTAATCTAAGCCTACTCAAATTGTAACTTTAAGCACAATCATCTCAATTTCCATGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 289 138 51 14 9</canonical_bands>
                <polymorphic_bands>550 289 138 14 9</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>133 119 72 68 68 65 63 58 43 42 37 33 28 28 24 22 15 14 13 13 9 7 6 5 3 3 3 2 2 2</canonical_bands>
                <polymorphic_bands>133 119 111 72 68 65 63 58 42 37 33 28 28 24 22 15 14 13 13 9 7 6 5 3 3 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACATAATCTCCAATATCTTCCTC</pcr_primer_p1>
		<pcr_primer_p2>CCTATTATCAACAGGAAAATGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGG</canonical_amplicon>
		<polymorphic_amplicon>AACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTRTACCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1194</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>496624</contig_pos>
        <strand>+</strand>
        <context>CATTTGTRTA[A/C]CTATSMCAAY</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTA</left_flank>
        <right_flank>CTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAAAATTCACACGCATTTAAATGCGGCCGCGGGTGGAGTCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTAACCCGCCTAAATGGAAACCCTATTGGAGATTAATCGGATAATTTATTGATAACAGTTGATGGTAAAAGACATAAAATAGTCGATACGAAGATAGTGTTTCGAAAATGAGATTTCTTGAGAAACGAGACAAATTTGAAAAGAATAAAAAACATGGGTATGGAGAGGAATTCATCAATAAATTAGTAAATAGGAGATCCTCATACTTCTGGATTGTACTCATTTGATTGTGGGGATGCTCCTGAAATAATTTTCTTAATTACTTTCTAGAAGAAACTTCCAGACCATTTTGCTCCACCGGCACAGTGGTGTTATAAACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGGGATCTTCCAAATGCTCCGTCTCCGCTTTTGCCTGCTCAACTGTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATAGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACATAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAATTAACGTTTTTTCTCTAATCTAAGCCTACTCAAATTGTAACTTTAAGCACAATCATCTCAATTTCCATGAAAGA</canonical>
            <polymorphic>TTAAAATTCACACGCATTTAAATGCGGCCGCGGGTGGAGTCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTAACCCGCCTAAATGGAAACCCTATTGGAGATTAATCGGATAATTTATTGATAACAGTTGATGGTAAAAGACATAAAATAGTCGATACGAAGATAGTGTTTCGAAAATGAGATTTCTTGAGAAACGAGACAAATTTGAAAAGAATAAAAAACATGGGTATGGAGAGGAATTCATCAATAAATTAGTAAATAGGAGATCCTCATACTTCTGGATTGTACTCATTTGATTGTGGGGATGCTCCTGAAATAATTTTCTTAATTACTTTCTAGAAGAAACTTCCAGACCATTTTGCTCCACCGGCACAGTGGTGTTATAAACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTAMCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGGGATCTTCCAAATGCTCCGTCTCCGCTTTTGCCTGCTCAACTGTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATAGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACATAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAATTAACGTTTTTTCTCTAATCTAAGCCTACTCAAATTGTAACTTTAAGCACAATCATCTCAATTTCCATGAAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 286 138 51 14 9</canonical_bands>
                <polymorphic_bands>553 286 138 14 9</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>497 293 133 77</canonical_bands>
                <polymorphic_bands>574 293 133</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACATAATCTCCAATATCTTCCTC</pcr_primer_p1>
		<pcr_primer_p2>CCTATTATCAACAGGAAAATGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGG</canonical_amplicon>
		<polymorphic_amplicon>AACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTAMCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1195</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>496629</contig_pos>
        <strand>+</strand>
        <context>GTRTAMCTAT[C/G]MCAAYATRAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTAT</left_flank>
        <right_flank>CCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCACACGCATTTAAATGCGGCCGCGGGTGGAGTCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTAACCCGCCTAAATGGAAACCCTATTGGAGATTAATCGGATAATTTATTGATAACAGTTGATGGTAAAAGACATAAAATAGTCGATACGAAGATAGTGTTTCGAAAATGAGATTTCTTGAGAAACGAGACAAATTTGAAAAGAATAAAAAACATGGGTATGGAGAGGAATTCATCAATAAATTAGTAAATAGGAGATCCTCATACTTCTGGATTGTACTCATTTGATTGTGGGGATGCTCCTGAAATAATTTTCTTAATTACTTTCTAGAAGAAACTTCCAGACCATTTTGCTCCACCGGCACAGTGGTGTTATAAACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGGGATCTTCCAAATGCTCCGTCTCCGCTTTTGCCTGCTCAACTGTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATAGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACATAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAATTAACGTTTTTTCTCTAATCTAAGCCTACTCAAATTGTAACTTTAAGCACAATCATCTCAATTTCCATGAAAGATATCA</canonical>
            <polymorphic>ATTCACACGCATTTAAATGCGGCCGCGGGTGGAGTCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTAACCCGCCTAAATGGAAACCCTATTGGAGATTAATCGGATAATTTATTGATAACAGTTGATGGTAAAAGACATAAAATAGTCGATACGAAGATAGTGTTTCGAAAATGAGATTTCTTGAGAAACGAGACAAATTTGAAAAGAATAAAAAACATGGGTATGGAGAGGAATTCATCAATAAATTAGTAAATAGGAGATCCTCATACTTCTGGATTGTACTCATTTGATTGTGGGGATGCTCCTGAAATAATTTTCTTAATTACTTTCTAGAAGAAACTTCCAGACCATTTTGCTCCACCGGCACAGTGGTGTTATAAACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATSCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGGGATCTTCCAAATGCTCCGTCTCCGCTTTTGCCTGCTCAACTGTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATAGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACATAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAATTAACGTTTTTTCTCTAATCTAAGCCTACTCAAATTGTAACTTTAAGCACAATCATCTCAATTTCCATGAAAGATATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACATAATCTCCAATATCTTCCTC</pcr_primer_p1>
		<pcr_primer_p2>CCTATTATCAACAGGAAAATGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGG</canonical_amplicon>
		<polymorphic_amplicon>AACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATSCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1196</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>496630</contig_pos>
        <strand>+</strand>
        <context>TRTAMCTATS[A/C]CAAYATRATG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATC</left_flank>
        <right_flank>CAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCACACGCATTTAAATGCGGCCGCGGGTGGAGTCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTAACCCGCCTAAATGGAAACCCTATTGGAGATTAATCGGATAATTTATTGATAACAGTTGATGGTAAAAGACATAAAATAGTCGATACGAAGATAGTGTTTCGAAAATGAGATTTCTTGAGAAACGAGACAAATTTGAAAAGAATAAAAAACATGGGTATGGAGAGGAATTCATCAATAAATTAGTAAATAGGAGATCCTCATACTTCTGGATTGTACTCATTTGATTGTGGGGATGCTCCTGAAATAATTTTCTTAATTACTTTCTAGAAGAAACTTCCAGACCATTTTGCTCCACCGGCACAGTGGTGTTATAAACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGGGATCTTCCAAATGCTCCGTCTCCGCTTTTGCCTGCTCAACTGTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATAGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACATAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAATTAACGTTTTTTCTCTAATCTAAGCCTACTCAAATTGTAACTTTAAGCACAATCATCTCAATTTCCATGAAAGATATCAA</canonical>
            <polymorphic>TTCACACGCATTTAAATGCGGCCGCGGGTGGAGTCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTAACCCGCCTAAATGGAAACCCTATTGGAGATTAATCGGATAATTTATTGATAACAGTTGATGGTAAAAGACATAAAATAGTCGATACGAAGATAGTGTTTCGAAAATGAGATTTCTTGAGAAACGAGACAAATTTGAAAAGAATAAAAAACATGGGTATGGAGAGGAATTCATCAATAAATTAGTAAATAGGAGATCCTCATACTTCTGGATTGTACTCATTTGATTGTGGGGATGCTCCTGAAATAATTTTCTTAATTACTTTCTAGAAGAAACTTCCAGACCATTTTGCTCCACCGGCACAGTGGTGTTATAAACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCMCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGGGATCTTCCAAATGCTCCGTCTCCGCTTTTGCCTGCTCAACTGTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATAGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACATAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAATTAACGTTTTTTCTCTAATCTAAGCCTACTCAAATTGTAACTTTAAGCACAATCATCTCAATTTCCATGAAAGATATCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACATAATCTCCAATATCTTCCTC</pcr_primer_p1>
		<pcr_primer_p2>CCTATTATCAACAGGAAAATGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGG</canonical_amplicon>
		<polymorphic_amplicon>AACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCMCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1197</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>496634</contig_pos>
        <strand>+</strand>
        <context>MCTATSMCAA[C/T]ATRATGWRTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAA</left_flank>
        <right_flank>ATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACGCATTTAAATGCGGCCGCGGGTGGAGTCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTAACCCGCCTAAATGGAAACCCTATTGGAGATTAATCGGATAATTTATTGATAACAGTTGATGGTAAAAGACATAAAATAGTCGATACGAAGATAGTGTTTCGAAAATGAGATTTCTTGAGAAACGAGACAAATTTGAAAAGAATAAAAAACATGGGTATGGAGAGGAATTCATCAATAAATTAGTAAATAGGAGATCCTCATACTTCTGGATTGTACTCATTTGATTGTGGGGATGCTCCTGAAATAATTTTCTTAATTACTTTCTAGAAGAAACTTCCAGACCATTTTGCTCCACCGGCACAGTGGTGTTATAAACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGGGATCTTCCAAATGCTCCGTCTCCGCTTTTGCCTGCTCAACTGTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATAGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACATAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAATTAACGTTTTTTCTCTAATCTAAGCCTACTCAAATTGTAACTTTAAGCACAATCATCTCAATTTCCATGAAAGATATCAAAAAT</canonical>
            <polymorphic>CACGCATTTAAATGCGGCCGCGGGTGGAGTCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTAACCCGCCTAAATGGAAACCCTATTGGAGATTAATCGGATAATTTATTGATAACAGTTGATGGTAAAAGACATAAAATAGTCGATACGAAGATAGTGTTTCGAAAATGAGATTTCTTGAGAAACGAGACAAATTTGAAAAGAATAAAAAACATGGGTATGGAGAGGAATTCATCAATAAATTAGTAAATAGGAGATCCTCATACTTCTGGATTGTACTCATTTGATTGTGGGGATGCTCCTGAAATAATTTTCTTAATTACTTTCTAGAAGAAACTTCCAGACCATTTTGCTCCACCGGCACAGTGGTGTTATAAACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAAYATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGGGATCTTCCAAATGCTCCGTCTCCGCTTTTGCCTGCTCAACTGTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATAGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACATAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAATTAACGTTTTTTCTCTAATCTAAGCCTACTCAAATTGTAACTTTAAGCACAATCATCTCAATTTCCATGAAAGATATCAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACATAATCTCCAATATCTTCCTC</pcr_primer_p1>
		<pcr_primer_p2>CCTATTATCAACAGGAAAATGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGG</canonical_amplicon>
		<polymorphic_amplicon>AACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAAYATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1198</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>496637</contig_pos>
        <strand>+</strand>
        <context>ATSMCAAYAT[A/G]ATGWRTGATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATAT</left_flank>
        <right_flank>ATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATTTAAATGCGGCCGCGGGTGGAGTCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTAACCCGCCTAAATGGAAACCCTATTGGAGATTAATCGGATAATTTATTGATAACAGTTGATGGTAAAAGACATAAAATAGTCGATACGAAGATAGTGTTTCGAAAATGAGATTTCTTGAGAAACGAGACAAATTTGAAAAGAATAAAAAACATGGGTATGGAGAGGAATTCATCAATAAATTAGTAAATAGGAGATCCTCATACTTCTGGATTGTACTCATTTGATTGTGGGGATGCTCCTGAAATAATTTTCTTAATTACTTTCTAGAAGAAACTTCCAGACCATTTTGCTCCACCGGCACAGTGGTGTTATAAACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGGGATCTTCCAAATGCTCCGTCTCCGCTTTTGCCTGCTCAACTGTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATAGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACATAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAATTAACGTTTTTTCTCTAATCTAAGCCTACTCAAATTGTAACTTTAAGCACAATCATCTCAATTTCCATGAAAGATATCAAAAATTAG</canonical>
            <polymorphic>GCATTTAAATGCGGCCGCGGGTGGAGTCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTAACCCGCCTAAATGGAAACCCTATTGGAGATTAATCGGATAATTTATTGATAACAGTTGATGGTAAAAGACATAAAATAGTCGATACGAAGATAGTGTTTCGAAAATGAGATTTCTTGAGAAACGAGACAAATTTGAAAAGAATAAAAAACATGGGTATGGAGAGGAATTCATCAATAAATTAGTAAATAGGAGATCCTCATACTTCTGGATTGTACTCATTTGATTGTGGGGATGCTCCTGAAATAATTTTCTTAATTACTTTCTAGAAGAAACTTCCAGACCATTTTGCTCCACCGGCACAGTGGTGTTATAAACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATRATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGGGATCTTCCAAATGCTCCGTCTCCGCTTTTGCCTGCTCAACTGTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATAGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACATAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAATTAACGTTTTTTCTCTAATCTAAGCCTACTCAAATTGTAACTTTAAGCACAATCATCTCAATTTCCATGAAAGATATCAAAAATTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACATAATCTCCAATATCTTCCTC</pcr_primer_p1>
		<pcr_primer_p2>CCTATTATCAACAGGAAAATGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGG</canonical_amplicon>
		<polymorphic_amplicon>AACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATRATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1199</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>496641</contig_pos>
        <strand>+</strand>
        <context>CAAYATRATG[A/T]RTGATCTACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATAATG</left_flank>
        <right_flank>ATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAATGCGGCCGCGGGTGGAGTCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTAACCCGCCTAAATGGAAACCCTATTGGAGATTAATCGGATAATTTATTGATAACAGTTGATGGTAAAAGACATAAAATAGTCGATACGAAGATAGTGTTTCGAAAATGAGATTTCTTGAGAAACGAGACAAATTTGAAAAGAATAAAAAACATGGGTATGGAGAGGAATTCATCAATAAATTAGTAAATAGGAGATCCTCATACTTCTGGATTGTACTCATTTGATTGTGGGGATGCTCCTGAAATAATTTTCTTAATTACTTTCTAGAAGAAACTTCCAGACCATTTTGCTCCACCGGCACAGTGGTGTTATAAACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGGGATCTTCCAAATGCTCCGTCTCCGCTTTTGCCTGCTCAACTGTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATAGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACATAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAATTAACGTTTTTTCTCTAATCTAAGCCTACTCAAATTGTAACTTTAAGCACAATCATCTCAATTTCCATGAAAGATATCAAAAATTAGTCAA</canonical>
            <polymorphic>TTAAATGCGGCCGCGGGTGGAGTCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTAACCCGCCTAAATGGAAACCCTATTGGAGATTAATCGGATAATTTATTGATAACAGTTGATGGTAAAAGACATAAAATAGTCGATACGAAGATAGTGTTTCGAAAATGAGATTTCTTGAGAAACGAGACAAATTTGAAAAGAATAAAAAACATGGGTATGGAGAGGAATTCATCAATAAATTAGTAAATAGGAGATCCTCATACTTCTGGATTGTACTCATTTGATTGTGGGGATGCTCCTGAAATAATTTTCTTAATTACTTTCTAGAAGAAACTTCCAGACCATTTTGCTCCACCGGCACAGTGGTGTTATAAACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATAATGWATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGGGATCTTCCAAATGCTCCGTCTCCGCTTTTGCCTGCTCAACTGTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATAGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACATAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAATTAACGTTTTTTCTCTAATCTAAGCCTACTCAAATTGTAACTTTAAGCACAATCATCTCAATTTCCATGAAAGATATCAAAAATTAGTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACATAATCTCCAATATCTTCCTC</pcr_primer_p1>
		<pcr_primer_p2>CCTATTATCAACAGGAAAATGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGG</canonical_amplicon>
		<polymorphic_amplicon>AACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATAATGWATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1200</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>496642</contig_pos>
        <strand>+</strand>
        <context>AAYATRATGW[A/G]TGATCTACCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATAATGA</left_flank>
        <right_flank>TGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATGCGGCCGCGGGTGGAGTCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTAACCCGCCTAAATGGAAACCCTATTGGAGATTAATCGGATAATTTATTGATAACAGTTGATGGTAAAAGACATAAAATAGTCGATACGAAGATAGTGTTTCGAAAATGAGATTTCTTGAGAAACGAGACAAATTTGAAAAGAATAAAAAACATGGGTATGGAGAGGAATTCATCAATAAATTAGTAAATAGGAGATCCTCATACTTCTGGATTGTACTCATTTGATTGTGGGGATGCTCCTGAAATAATTTTCTTAATTACTTTCTAGAAGAAACTTCCAGACCATTTTGCTCCACCGGCACAGTGGTGTTATAAACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGGGATCTTCCAAATGCTCCGTCTCCGCTTTTGCCTGCTCAACTGTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATAGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACATAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAATTAACGTTTTTTCTCTAATCTAAGCCTACTCAAATTGTAACTTTAAGCACAATCATCTCAATTTCCATGAAAGATATCAAAAATTAGTCAAC</canonical>
            <polymorphic>TAAATGCGGCCGCGGGTGGAGTCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTAACCCGCCTAAATGGAAACCCTATTGGAGATTAATCGGATAATTTATTGATAACAGTTGATGGTAAAAGACATAAAATAGTCGATACGAAGATAGTGTTTCGAAAATGAGATTTCTTGAGAAACGAGACAAATTTGAAAAGAATAAAAAACATGGGTATGGAGAGGAATTCATCAATAAATTAGTAAATAGGAGATCCTCATACTTCTGGATTGTACTCATTTGATTGTGGGGATGCTCCTGAAATAATTTTCTTAATTACTTTCTAGAAGAAACTTCCAGACCATTTTGCTCCACCGGCACAGTGGTGTTATAAACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATAATGARTGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGGGATCTTCCAAATGCTCCGTCTCCGCTTTTGCCTGCTCAACTGTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATAGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACATAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAATTAACGTTTTTTCTCTAATCTAAGCCTACTCAAATTGTAACTTTAAGCACAATCATCTCAATTTCCATGAAAGATATCAAAAATTAGTCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACATAATCTCCAATATCTTCCTC</pcr_primer_p1>
		<pcr_primer_p2>CCTATTATCAACAGGAAAATGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGG</canonical_amplicon>
		<polymorphic_amplicon>AACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATAATGARTGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1201</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>496898</contig_pos>
        <strand>+</strand>
        <context>CCAGGAATAT[A/T]GAAAATCTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATAT</left_flank>
        <right_flank>GAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCTGGATTGTACTCATTTGATTGTGGGGATGCTCCTGAAATAATTTTCTTAATTACTTTCTAGAAGAAACTTCCAGACCATTTTGCTCCACCGGCACAGTGGTGTTATAAACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGGGATCTTCCAAATGCTCCGTCTCCGCTTTTGCCTGCTCAACTGTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATAGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACATAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAATTAACGTTTTTTCTCTAATCTAAGCCTACTCAAATTGTAACTTTAAGCACAATCATCTCAATTTCCATGAAAGATATCAAAAATTAGTCAACTGATAAAATATTGGTGGTAGTATGATAAACAATTTATCTGTTGACAAATTTTTGATATATTTCCAAGAAATCGAGATAAGTGAGCTCAAATTAGAAAAAATACTGCATACCTGTGACGAAGAAGAAGCACTAGCGAATCTGGTTCCTCCAGATTTTTCATCGATCGTCAATCCGGTTACAGGGGCATCGTGAGCTGAATAAACTCTCACCGCTTTCGTCGAACGAGTCGGATCTGCTTCATGAGCACTGGAAATTA</canonical>
            <polymorphic>CTTCTGGATTGTACTCATTTGATTGTGGGGATGCTCCTGAAATAATTTTCTTAATTACTTTCTAGAAGAAACTTCCAGACCATTTTGCTCCACCGGCACAGTGGTGTTATAAACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGGGATCTTCCAAATGCTCCGTCTCCGCTTTTGCCTGCTCAACTGTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATWGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACATAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAATTAACGTTTTTTCTCTAATCTAAGCCTACTCAAATTGTAACTTTAAGCACAATCATCTCAATTTCCATGAAAGATATCAAAAATTAGTCAACTGATAAAATATTGGTGGTAGTATGATAAACAATTTATCTGTTGACAAATTTTTGATATATTTCCAAGAAATCGAGATAAGTGAGCTCAAATTAGAAAAAATACTGCATACCTGTGACGAAGAAGAAGCACTAGCGAATCTGGTTCCTCCAGATTTTTCATCGATCGTCAATCCGGTTACAGGGGCATCGTGAGCTGAATAAACTCTCACCGCTTTCGTCGAACGAGTCGGATCTGCTTCATGAGCACTGGAAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGGGTAGAAGACCTAAATAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTGGTTTCTAGATTTTCATCTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATAGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACATAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAAT</canonical_amplicon>
		<polymorphic_amplicon>GTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATWGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACATAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1202</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>498799</contig_pos>
        <strand>+</strand>
        <context>CGGCGAGCGA[G/T]ACAGACATCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCGACAGTGTTTGGCTGCACAAAAAGACGTCTCGGCTTGCGGCGAGCGA</left_flank>
        <right_flank>ACAGACATCACGCCAGTGGAGCTCAGTTTCCCCAACAGCTCCATAGGACT</right_flank>
        <qual_score>145</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAGTACCTTTTTCATACTTTCCCACCATTCTGGCCTTTGGTATGTCTTCATCGTTCATAGAATCGTCCATTCTGGATCTACGGGTAATTTTAATAATCAAGGAAAAAGCTATTTAAATAAAATCATTGGTTGAAAACCTTCGGTAGTACAAAAAAAAAGACAGATTTTAAATTAGCAAACTAATTTTATAAACAAAATCATGAAAAAATCACAAACAACCTTATGCTTAAAAACCGATAAAAGAAAAATAAATTAAAGAGAAAATTGATCTAGAACCACTTTTGATCGTTCTTCCAGCATGCGTGTAGATCTTCAATTGCAGCCGAGTCGTACCGCTCAACGAACGACTTGATGACACCAGATGCATCAGATGGGTAGGTCACCAAGGACACTTCTGGAATAAAAATATTAGAAAAATCTTCAAGTTTCAGAATCACCTCCACTCTTCTCGACAGTGTTTGGCTGCACAAAAAGACGTCTCGGCTTGCGGCGAGCGATACAGACATCACGCCAGTGGAGCTCAGTTTCCCCAACAGCTCCATAGGACTCGAAGAGCTTCTTTCCACCCTCAAAATCTCCAGTCGATTTGTAAGCTTGAAGTTTACGAAGGAATTCAACGACAGCTGGACGACCGACAGAATCGATCAAGTTGCGATCGAGCTTGAAGTGGAGATCAGCCTTTCCATCCTCTCCTTTCGTCTCTTCAATCTTCACGAATTCTTTTCCAGCCTCTAACACCACTTTGGTGAGAACGTAGCGAGCGTAACAATGGGCTTGTCCCCACTTCTTCTGGTCGGCTTGATAGAATTCGAGGGCCATGAGTCCTGCGCGAATCTCACTGAGCCAGTTGACGTACTTCACATCTTGAGCAAGCTCTCCAGTGTATCCGAAGATTCTGAATTAAATATAATTACAAAACTACTATTAGAGGTTGATACTGACTCGAGAATATCAGAATCACAGCACAGAACGTATCCAACAGCTTCTGCACGGCACTC</canonical>
            <polymorphic>CAAAGTACCTTTTTCATACTTTCCCACCATTCTGGCCTTTGGTATGTCTTCATCGTTCATAGAATCGTCCATTCTGGATCTACGGGTAATTTTAATAATCAAGGAAAAAGCTATTTAAATAAAATCATTGGTTGAAAACCTTCGGTAGTACAAAAAAAAAGACAGATTTTAAATTAGCAAACTAATTTTATAAACAAAATCATGAAAAAATCACAAACAACCTTATGCTTAAAAACCGATAAAAGAAAAATAAATTAAAGAGAAAATTGATCTAGAACCACTTTTGATCGTTCTTCCAGCATGCGTGTAGATCTTCAATTGCAGCCGAGTCGTACCGCTCAACGAACGACTTGATGACACCAGATGCATCAGATGGGTAGGTCACCAAGGACACTTCTGGAATAAAAATATTAGAAAAATCTTCAAGTTTCAGAATCACCTCCACTCTTCTCGACAGTGTTTGGCTGCACAAAAAGACGTCTCGGCTTGCGGCGAGCGAKACAGACATCACGCCAGTGGAGCTCAGTTTCCCCAACAGCTCCATAGGACTCGAAGAGCTTCTTTCCACCCTCAAAATCTCCAGTCGATTTGTAAGCTTGAAGTTTACGAAGGAATTCAACGACAGCTGGACGACCGACAGAATCGATCAAGTTGCGATCGAGCTTGAAGTGGAGATCAGCCTTTCCATCCTCTCCTTTCGTCTCTTCAATCTTCACGAATTCTTTTCCAGCCTCTAACACCACTTTGGTGAGAACGTAGCGAGCGTAACAATGGGCTTGTCCCCACTTCTTCTGGTCGGCTTGATAGAATTCGAGGGCCATGAGTCCTGCGCGAATCTCACTGAGCCAGTTGACGTACTTCACATCTTGAGCAAGCTCTCCAGTGTATCCGAAGATTCTGAATTAAATATAATTACAAAACTACTATTAGAGGTTGATACTGACTCGAGAATATCAGAATCACAGCACAGAACGTATCCAACAGCTTCTGCACGGCACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGACACTTCTGGAATAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTTGAATTCCTTCGTAAACTTC</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>AAGGACACTTCTGGAATAAAAATATTAGAAAAATCTTCAAGTTTCAGAATCACCTCCACTCTTCTCGACAGTGTTTGGCTGCACAAAAAGACGTCTCGGCTTGCGGCGAGCGATACAGACATCACGCCAGTGGAGCTCAGTTTCCCCAACAGCTCCATAGGACTCGAAGAGCTTCTTTCCACCCTCAAAATCTCCAGTCGATTTGTAAGCTTGAAGTTTACGAAGGAATTCAAC</canonical_amplicon>
		<polymorphic_amplicon>AAGGACACTTCTGGAATAAAAATATTAGAAAAATCTTCAAGTTTCAGAATCACCTCCACTCTTCTCGACAGTGTTTGGCTGCACAAAAAGACGTCTCGGCTTGCGGCGAGCGAKACAGACATCACGCCAGTGGAGCTCAGTTTCCCCAACAGCTCCATAGGACTCGAAGAGCTTCTTTCCACCCTCAAAATCTCCAGTCGATTTGTAAGCTTGAAGTTTACGAAGGAATTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1203</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>498718</contig_pos>
        <strand>+</strand>
        <context>TATTAGAAAA[A/G]TCTTCAAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAGATGGGTAGGTCACCAAGGACACTTCTGGAATAAAAATATTAGAAAA</left_flank>
        <right_flank>TCTTCAAGTTTCAGAATCACCTCCACTCTTCTCGACAGTGTTTGGCTGCA</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCAAAACGGAAACTCCAAACTCCAACTAGCGACCGATTATGAGCTTTAAAAAAGAAACAGAGTTGATCATTCAGAAGTTCAAAGTACCTTTTTCATACTTTCCCACCATTCTGGCCTTTGGTATGTCTTCATCGTTCATAGAATCGTCCATTCTGGATCTACGGGTAATTTTAATAATCAAGGAAAAAGCTATTTAAATAAAATCATTGGTTGAAAACCTTCGGTAGTACAAAAAAAAAGACAGATTTTAAATTAGCAAACTAATTTTATAAACAAAATCATGAAAAAATCACAAACAACCTTATGCTTAAAAACCGATAAAAGAAAAATAAATTAAAGAGAAAATTGATCTAGAACCACTTTTGATCGTTCTTCCAGCATGCGTGTAGATCTTCAATTGCAGCCGAGTCGTACCGCTCAACGAACGACTTGATGACACCAGATGCATCAGATGGGTAGGTCACCAAGGACACTTCTGGAATAAAAATATTAGAAAAATCTTCAAGTTTCAGAATCACCTCCACTCTTCTCGACAGTGTTTGGCTGCACAAAAAGACGTCTCGGCTTGCGGCGAGCGATACAGACATCACGCCAGTGGAGCTCAGTTTCCCCAACAGCTCCATAGGACTCGAAGAGCTTCTTTCCACCCTCAAAATCTCCAGTCGATTTGTAAGCTTGAAGTTTACGAAGGAATTCAACGACAGCTGGACGACCGACAGAATCGATCAAGTTGCGATCGAGCTTGAAGTGGAGATCAGCCTTTCCATCCTCTCCTTTCGTCTCTTCAATCTTCACGAATTCTTTTCCAGCCTCTAACACCACTTTGGTGAGAACGTAGCGAGCGTAACAATGGGCTTGTCCCCACTTCTTCTGGTCGGCTTGATAGAATTCGAGGGCCATGAGTCCTGCGCGAATCTCACTGAGCCAGTTGACGTACTTCACATCTTGAGCAAGCTCTCCAGTGTATCCGAAGATTCTGAATTAAATATAATTACAAA</canonical>
            <polymorphic>CTCCAAAACGGAAACTCCAAACTCCAACTAGCGACCGATTATGAGCTTTAAAAAAGAAACAGAGTTGATCATTCAGAAGTTCAAAGTACCTTTTTCATACTTTCCCACCATTCTGGCCTTTGGTATGTCTTCATCGTTCATAGAATCGTCCATTCTGGATCTACGGGTAATTTTAATAATCAAGGAAAAAGCTATTTAAATAAAATCATTGGTTGAAAACCTTCGGTAGTACAAAAAAAAAGACAGATTTTAAATTAGCAAACTAATTTTATAAACAAAATCATGAAAAAATCACAAACAACCTTATGCTTAAAAACCGATAAAAGAAAAATAAATTAAAGAGAAAATTGATCTAGAACCACTTTTGATCGTTCTTCCAGCATGCGTGTAGATCTTCAATTGCAGCCGAGTCGTACCGCTCAACGAACGACTTGATGACACCAGATGCATCAGATGGGTAGGTCACCAAGGACACTTCTGGAATAAAAATATTAGAAAARTCTTCAAGTTTCAGAATCACCTCCACTCTTCTCGACAGTGTTTGGCTGCACAAAAAGACGTCTCGGCTTGCGGCGAGCGATACAGACATCACGCCAGTGGAGCTCAGTTTCCCCAACAGCTCCATAGGACTCGAAGAGCTTCTTTCCACCCTCAAAATCTCCAGTCGATTTGTAAGCTTGAAGTTTACGAAGGAATTCAACGACAGCTGGACGACCGACAGAATCGATCAAGTTGCGATCGAGCTTGAAGTGGAGATCAGCCTTTCCATCCTCTCCTTTCGTCTCTTCAATCTTCACGAATTCTTTTCCAGCCTCTAACACCACTTTGGTGAGAACGTAGCGAGCGTAACAATGGGCTTGTCCCCACTTCTTCTGGTCGGCTTGATAGAATTCGAGGGCCATGAGTCCTGCGCGAATCTCACTGAGCCAGTTGACGTACTTCACATCTTGAGCAAGCTCTCCAGTGTATCCGAAGATTCTGAATTAAATATAATTACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCACTTTTGATCGTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>AGAAGCTCTTCGAGTCCTATG</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>AACCACTTTTGATCGTTCTTCCAGCATGCGTGTAGATCTTCAATTGCAGCCGAGTCGTACCGCTCAACGAACGACTTGATGACACCAGATGCATCAGATGGGTAGGTCACCAAGGACACTTCTGGAATAAAAATATTAGAAAAATCTTCAAGTTTCAGAATCACCTCCACTCTTCTCGACAGTGTTTGGCTGCACAAAAAGACGTCTCGGCTTGCGGCGAGCGATACAGACATCACGCCAGTGGAGCTCAGTTTCCCCAACAGCTCCATAGGACTCGAAGAGCTTCT</canonical_amplicon>
		<polymorphic_amplicon>AACCACTTTTGATCGTTCTTCCAGCATGCGTGTAGATCTTCAATTGCAGCCGAGTCGTACCGCTCAACGAACGACTTGATGACACCAGATGCATCAGATGGGTAGGTCACCAAGGACACTTCTGGAATAAAAATATTAGAAAARTCTTCAAGTTTCAGAATCACCTCCACTCTTCTCGACAGTGTTTGGCTGCACAAAAAGACGTCTCGGCTTGCGGCGAGCGATACAGACATCACGCCAGTGGAGCTCAGTTTCCCCAACAGCTCCATAGGACTCGAAGAGCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1204</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>498658</contig_pos>
        <strand>+</strand>
        <context>ACTTGATGAC[A/T]CCAGATGCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGATCTTCAATTGCAGCCGAGTCGTACCGCTCAACGAACGACTTGATGAC</left_flank>
        <right_flank>CCAGATGCATCAGATGGGTAGGTCACCAAGGACACTTCTGGAATAAAAAT</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACTTACAAAATCCAGAGCTTCGAATTCTCATGCGAAACGGAAATCACTCCGATTTGCCCTCCAAAACGGAAACTCCAAACTCCAACTAGCGACCGATTATGAGCTTTAAAAAAGAAACAGAGTTGATCATTCAGAAGTTCAAAGTACCTTTTTCATACTTTCCCACCATTCTGGCCTTTGGTATGTCTTCATCGTTCATAGAATCGTCCATTCTGGATCTACGGGTAATTTTAATAATCAAGGAAAAAGCTATTTAAATAAAATCATTGGTTGAAAACCTTCGGTAGTACAAAAAAAAAGACAGATTTTAAATTAGCAAACTAATTTTATAAACAAAATCATGAAAAAATCACAAACAACCTTATGCTTAAAAACCGATAAAAGAAAAATAAATTAAAGAGAAAATTGATCTAGAACCACTTTTGATCGTTCTTCCAGCATGCGTGTAGATCTTCAATTGCAGCCGAGTCGTACCGCTCAACGAACGACTTGATGACACCAGATGCATCAGATGGGTAGGTCACCAAGGACACTTCTGGAATAAAAATATTAGAAAAATCTTCAAGTTTCAGAATCACCTCCACTCTTCTCGACAGTGTTTGGCTGCACAAAAAGACGTCTCGGCTTGCGGCGAGCGATACAGACATCACGCCAGTGGAGCTCAGTTTCCCCAACAGCTCCATAGGACTCGAAGAGCTTCTTTCCACCCTCAAAATCTCCAGTCGATTTGTAAGCTTGAAGTTTACGAAGGAATTCAACGACAGCTGGACGACCGACAGAATCGATCAAGTTGCGATCGAGCTTGAAGTGGAGATCAGCCTTTCCATCCTCTCCTTTCGTCTCTTCAATCTTCACGAATTCTTTTCCAGCCTCTAACACCACTTTGGTGAGAACGTAGCGAGCGTAACAATGGGCTTGTCCCCACTTCTTCTGGTCGGCTTGATAGAATTCGAGGGCCATGAGTCCTGCGCGAATCTCACTGAGCCAGTTGACGTACT</canonical>
            <polymorphic>ACACTTACAAAATCCAGAGCTTCGAATTCTCATGCGAAACGGAAATCACTCCGATTTGCCCTCCAAAACGGAAACTCCAAACTCCAACTAGCGACCGATTATGAGCTTTAAAAAAGAAACAGAGTTGATCATTCAGAAGTTCAAAGTACCTTTTTCATACTTTCCCACCATTCTGGCCTTTGGTATGTCTTCATCGTTCATAGAATCGTCCATTCTGGATCTACGGGTAATTTTAATAATCAAGGAAAAAGCTATTTAAATAAAATCATTGGTTGAAAACCTTCGGTAGTACAAAAAAAAAGACAGATTTTAAATTAGCAAACTAATTTTATAAACAAAATCATGAAAAAATCACAAACAACCTTATGCTTAAAAACCGATAAAAGAAAAATAAATTAAAGAGAAAATTGATCTAGAACCACTTTTGATCGTTCTTCCAGCATGCGTGTAGATCTTCAATTGCAGCCGAGTCGTACCGCTCAACGAACGACTTGATGACWCCAGATGCATCAGATGGGTAGGTCACCAAGGACACTTCTGGAATAAAAATATTAGAAAAATCTTCAAGTTTCAGAATCACCTCCACTCTTCTCGACAGTGTTTGGCTGCACAAAAAGACGTCTCGGCTTGCGGCGAGCGATACAGACATCACGCCAGTGGAGCTCAGTTTCCCCAACAGCTCCATAGGACTCGAAGAGCTTCTTTCCACCCTCAAAATCTCCAGTCGATTTGTAAGCTTGAAGTTTACGAAGGAATTCAACGACAGCTGGACGACCGACAGAATCGATCAAGTTGCGATCGAGCTTGAAGTGGAGATCAGCCTTTCCATCCTCTCCTTTCGTCTCTTCAATCTTCACGAATTCTTTTCCAGCCTCTAACACCACTTTGGTGAGAACGTAGCGAGCGTAACAATGGGCTTGTCCCCACTTCTTCTGGTCGGCTTGATAGAATTCGAGGGCCATGAGTCCTGCGCGAATCTCACTGAGCCAGTTGACGTACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>187 119 104 67 55 52 49 45 45 44 41 35 27 25 24 19 15 10 9 8 8 6 3 3</canonical_bands>
                <polymorphic_bands>187 119 104 77 67 55 49 45 45 44 41 35 27 24 19 15 10 9 8 8 6 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTATGCTTAAAAACCGATAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCAAACACTGTCGAGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTTATGCTTAAAAACCGATAAAAGAAAAATAAATTAAAGAGAAAATTGATCTAGAACCACTTTTGATCGTTCTTCCAGCATGCGTGTAGATCTTCAATTGCAGCCGAGTCGTACCGCTCAACGAACGACTTGATGACACCAGATGCATCAGATGGGTAGGTCACCAAGGACACTTCTGGAATAAAAATATTAGAAAAATCTTCAAGTTTCAGAATCACCTCCACTCTTCTCGACAGTGTTTGG</canonical_amplicon>
		<polymorphic_amplicon>CTTATGCTTAAAAACCGATAAAAGAAAAATAAATTAAAGAGAAAATTGATCTAGAACCACTTTTGATCGTTCTTCCAGCATGCGTGTAGATCTTCAATTGCAGCCGAGTCGTACCGCTCAACGAACGACTTGATGACWCCAGATGCATCAGATGGGTAGGTCACCAAGGACACTTCTGGAATAAAAATATTAGAAAAATCTTCAAGTTTCAGAATCACCTCCACTCTTCTCGACAGTGTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1205</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>498640</contig_pos>
        <strand>+</strand>
        <context>CGTACCGCTC[A/C]ACGAACGACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCTTCCAGCATGCGTGTAGATCTTCAATTGCAGCCGAGTCGTACCGCTC</left_flank>
        <right_flank>ACGAACGACTTGATGACACCAGATGCATCAGATGGGTAGGTCACCAAGGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCATAATTTCATTCAACACTTACAAAATCCAGAGCTTCGAATTCTCATGCGAAACGGAAATCACTCCGATTTGCCCTCCAAAACGGAAACTCCAAACTCCAACTAGCGACCGATTATGAGCTTTAAAAAAGAAACAGAGTTGATCATTCAGAAGTTCAAAGTACCTTTTTCATACTTTCCCACCATTCTGGCCTTTGGTATGTCTTCATCGTTCATAGAATCGTCCATTCTGGATCTACGGGTAATTTTAATAATCAAGGAAAAAGCTATTTAAATAAAATCATTGGTTGAAAACCTTCGGTAGTACAAAAAAAAAGACAGATTTTAAATTAGCAAACTAATTTTATAAACAAAATCATGAAAAAATCACAAACAACCTTATGCTTAAAAACCGATAAAAGAAAAATAAATTAAAGAGAAAATTGATCTAGAACCACTTTTGATCGTTCTTCCAGCATGCGTGTAGATCTTCAATTGCAGCCGAGTCGTACCGCTCAACGAACGACTTGATGACACCAGATGCATCAGATGGGTAGGTCACCAAGGACACTTCTGGAATAAAAATATTAGAAAAATCTTCAAGTTTCAGAATCACCTCCACTCTTCTCGACAGTGTTTGGCTGCACAAAAAGACGTCTCGGCTTGCGGCGAGCGATACAGACATCACGCCAGTGGAGCTCAGTTTCCCCAACAGCTCCATAGGACTCGAAGAGCTTCTTTCCACCCTCAAAATCTCCAGTCGATTTGTAAGCTTGAAGTTTACGAAGGAATTCAACGACAGCTGGACGACCGACAGAATCGATCAAGTTGCGATCGAGCTTGAAGTGGAGATCAGCCTTTCCATCCTCTCCTTTCGTCTCTTCAATCTTCACGAATTCTTTTCCAGCCTCTAACACCACTTTGGTGAGAACGTAGCGAGCGTAACAATGGGCTTGTCCCCACTTCTTCTGGTCGGCTTGATAGAATTCGAGGGCCATGAGTCCTGCGCGAATCTCAC</canonical>
            <polymorphic>AAATCATAATTTCATTCAACACTTACAAAATCCAGAGCTTCGAATTCTCATGCGAAACGGAAATCACTCCGATTTGCCCTCCAAAACGGAAACTCCAAACTCCAACTAGCGACCGATTATGAGCTTTAAAAAAGAAACAGAGTTGATCATTCAGAAGTTCAAAGTACCTTTTTCATACTTTCCCACCATTCTGGCCTTTGGTATGTCTTCATCGTTCATAGAATCGTCCATTCTGGATCTACGGGTAATTTTAATAATCAAGGAAAAAGCTATTTAAATAAAATCATTGGTTGAAAACCTTCGGTAGTACAAAAAAAAAGACAGATTTTAAATTAGCAAACTAATTTTATAAACAAAATCATGAAAAAATCACAAACAACCTTATGCTTAAAAACCGATAAAAGAAAAATAAATTAAAGAGAAAATTGATCTAGAACCACTTTTGATCGTTCTTCCAGCATGCGTGTAGATCTTCAATTGCAGCCGAGTCGTACCGCTCMACGAACGACTTGATGACACCAGATGCATCAGATGGGTAGGTCACCAAGGACACTTCTGGAATAAAAATATTAGAAAAATCTTCAAGTTTCAGAATCACCTCCACTCTTCTCGACAGTGTTTGGCTGCACAAAAAGACGTCTCGGCTTGCGGCGAGCGATACAGACATCACGCCAGTGGAGCTCAGTTTCCCCAACAGCTCCATAGGACTCGAAGAGCTTCTTTCCACCCTCAAAATCTCCAGTCGATTTGTAAGCTTGAAGTTTACGAAGGAATTCAACGACAGCTGGACGACCGACAGAATCGATCAAGTTGCGATCGAGCTTGAAGTGGAGATCAGCCTTTCCATCCTCTCCTTTCGTCTCTTCAATCTTCACGAATTCTTTTCCAGCCTCTAACACCACTTTGGTGAGAACGTAGCGAGCGTAACAATGGGCTTGTCCCCACTTCTTCTGGTCGGCTTGATAGAATTCGAGGGCCATGAGTCCTGCGCGAATCTCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTATGCTTAAAAACCGATAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCAAACACTGTCGAGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTTATGCTTAAAAACCGATAAAAGAAAAATAAATTAAAGAGAAAATTGATCTAGAACCACTTTTGATCGTTCTTCCAGCATGCGTGTAGATCTTCAATTGCAGCCGAGTCGTACCGCTCAACGAACGACTTGATGACACCAGATGCATCAGATGGGTAGGTCACCAAGGACACTTCTGGAATAAAAATATTAGAAAAATCTTCAAGTTTCAGAATCACCTCCACTCTTCTCGACAGTGTTTGG</canonical_amplicon>
		<polymorphic_amplicon>CTTATGCTTAAAAACCGATAAAAGAAAAATAAATTAAAGAGAAAATTGATCTAGAACCACTTTTGATCGTTCTTCCAGCATGCGTGTAGATCTTCAATTGCAGCCGAGTCGTACCGCTCMACGAACGACTTGATGACACCAGATGCATCAGATGGGTAGGTCACCAAGGACACTTCTGGAATAAAAATATTAGAAAAATCTTCAAGTTTCAGAATCACCTCCACTCTTCTCGACAGTGTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1206</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>498622</contig_pos>
        <strand>+</strand>
        <context>CTTCAATTGC[A/T]GCCGAGTCGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGAACCACTTTTGATCGTTCTTCCAGCATGCGTGTAGATCTTCAATTGC</left_flank>
        <right_flank>GCCGAGTCGTACCGCTCAACGAACGACTTGATGACACCAGATGCATCAGA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAAGTTCAAAAATCAAAAATCATAATTTCATTCAACACTTACAAAATCCAGAGCTTCGAATTCTCATGCGAAACGGAAATCACTCCGATTTGCCCTCCAAAACGGAAACTCCAAACTCCAACTAGCGACCGATTATGAGCTTTAAAAAAGAAACAGAGTTGATCATTCAGAAGTTCAAAGTACCTTTTTCATACTTTCCCACCATTCTGGCCTTTGGTATGTCTTCATCGTTCATAGAATCGTCCATTCTGGATCTACGGGTAATTTTAATAATCAAGGAAAAAGCTATTTAAATAAAATCATTGGTTGAAAACCTTCGGTAGTACAAAAAAAAAGACAGATTTTAAATTAGCAAACTAATTTTATAAACAAAATCATGAAAAAATCACAAACAACCTTATGCTTAAAAACCGATAAAAGAAAAATAAATTAAAGAGAAAATTGATCTAGAACCACTTTTGATCGTTCTTCCAGCATGCGTGTAGATCTTCAATTGCAGCCGAGTCGTACCGCTCAACGAACGACTTGATGACACCAGATGCATCAGATGGGTAGGTCACCAAGGACACTTCTGGAATAAAAATATTAGAAAAATCTTCAAGTTTCAGAATCACCTCCACTCTTCTCGACAGTGTTTGGCTGCACAAAAAGACGTCTCGGCTTGCGGCGAGCGATACAGACATCACGCCAGTGGAGCTCAGTTTCCCCAACAGCTCCATAGGACTCGAAGAGCTTCTTTCCACCCTCAAAATCTCCAGTCGATTTGTAAGCTTGAAGTTTACGAAGGAATTCAACGACAGCTGGACGACCGACAGAATCGATCAAGTTGCGATCGAGCTTGAAGTGGAGATCAGCCTTTCCATCCTCTCCTTTCGTCTCTTCAATCTTCACGAATTCTTTTCCAGCCTCTAACACCACTTTGGTGAGAACGTAGCGAGCGTAACAATGGGCTTGTCCCCACTTCTTCTGGTCGGCTTGATAGAATTCGAGGGCCATGA</canonical>
            <polymorphic>CTGAAGTTCAAAAATCAAAAATCATAATTTCATTCAACACTTACAAAATCCAGAGCTTCGAATTCTCATGCGAAACGGAAATCACTCCGATTTGCCCTCCAAAACGGAAACTCCAAACTCCAACTAGCGACCGATTATGAGCTTTAAAAAAGAAACAGAGTTGATCATTCAGAAGTTCAAAGTACCTTTTTCATACTTTCCCACCATTCTGGCCTTTGGTATGTCTTCATCGTTCATAGAATCGTCCATTCTGGATCTACGGGTAATTTTAATAATCAAGGAAAAAGCTATTTAAATAAAATCATTGGTTGAAAACCTTCGGTAGTACAAAAAAAAAGACAGATTTTAAATTAGCAAACTAATTTTATAAACAAAATCATGAAAAAATCACAAACAACCTTATGCTTAAAAACCGATAAAAGAAAAATAAATTAAAGAGAAAATTGATCTAGAACCACTTTTGATCGTTCTTCCAGCATGCGTGTAGATCTTCAATTGCWGCCGAGTCGTACCGCTCAACGAACGACTTGATGACACCAGATGCATCAGATGGGTAGGTCACCAAGGACACTTCTGGAATAAAAATATTAGAAAAATCTTCAAGTTTCAGAATCACCTCCACTCTTCTCGACAGTGTTTGGCTGCACAAAAAGACGTCTCGGCTTGCGGCGAGCGATACAGACATCACGCCAGTGGAGCTCAGTTTCCCCAACAGCTCCATAGGACTCGAAGAGCTTCTTTCCACCCTCAAAATCTCCAGTCGATTTGTAAGCTTGAAGTTTACGAAGGAATTCAACGACAGCTGGACGACCGACAGAATCGATCAAGTTGCGATCGAGCTTGAAGTGGAGATCAGCCTTTCCATCCTCTCCTTTCGTCTCTTCAATCTTCACGAATTCTTTTCCAGCCTCTAACACCACTTTGGTGAGAACGTAGCGAGCGTAACAATGGGCTTGTCCCCACTTCTTCTGGTCGGCTTGATAGAATTCGAGGGCCATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>214 140 86 75 71 55 51 45 38 37 36 30 24 21 19 18 17 17 6</canonical_bands>
                <polymorphic_bands>354 86 75 71 55 51 45 38 37 36 30 24 21 19 18 17 17 6</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>498 356 101 45</canonical_bands>
                <polymorphic_bands>543 356 101</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>498 359 143</canonical_bands>
                <polymorphic_bands>641 359</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTATGCTTAAAAACCGATAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCAAACACTGTCGAGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTTATGCTTAAAAACCGATAAAAGAAAAATAAATTAAAGAGAAAATTGATCTAGAACCACTTTTGATCGTTCTTCCAGCATGCGTGTAGATCTTCAATTGCAGCCGAGTCGTACCGCTCAACGAACGACTTGATGACACCAGATGCATCAGATGGGTAGGTCACCAAGGACACTTCTGGAATAAAAATATTAGAAAAATCTTCAAGTTTCAGAATCACCTCCACTCTTCTCGACAGTGTTTGG</canonical_amplicon>
		<polymorphic_amplicon>CTTATGCTTAAAAACCGATAAAAGAAAAATAAATTAAAGAGAAAATTGATCTAGAACCACTTTTGATCGTTCTTCCAGCATGCGTGTAGATCTTCAATTGCWGCCGAGTCGTACCGCTCAACGAACGACTTGATGACACCAGATGCATCAGATGGGTAGGTCACCAAGGACACTTCTGGAATAAAAATATTAGAAAAATCTTCAAGTTTCAGAATCACCTCCACTCTTCTCGACAGTGTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1207</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>498604</contig_pos>
        <strand>+</strand>
        <context>TCCAGCATGC[A/G]TGTAGATCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAAAGAGAAAATTGATCTAGAACCACTTTTGATCGTTCTTCCAGCATGC</left_flank>
        <right_flank>TGTAGATCTTCAATTGCAGCCGAGTCGTACCGCTCAACGAACGACTTGAT</right_flank>
        <qual_score>145</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGCACGATTCTCACATCTGAAGTTCAAAAATCAAAAATCATAATTTCATTCAACACTTACAAAATCCAGAGCTTCGAATTCTCATGCGAAACGGAAATCACTCCGATTTGCCCTCCAAAACGGAAACTCCAAACTCCAACTAGCGACCGATTATGAGCTTTAAAAAAGAAACAGAGTTGATCATTCAGAAGTTCAAAGTACCTTTTTCATACTTTCCCACCATTCTGGCCTTTGGTATGTCTTCATCGTTCATAGAATCGTCCATTCTGGATCTACGGGTAATTTTAATAATCAAGGAAAAAGCTATTTAAATAAAATCATTGGTTGAAAACCTTCGGTAGTACAAAAAAAAAGACAGATTTTAAATTAGCAAACTAATTTTATAAACAAAATCATGAAAAAATCACAAACAACCTTATGCTTAAAAACCGATAAAAGAAAAATAAATTAAAGAGAAAATTGATCTAGAACCACTTTTGATCGTTCTTCCAGCATGCGTGTAGATCTTCAATTGCAGCCGAGTCGTACCGCTCAACGAACGACTTGATGACACCAGATGCATCAGATGGGTAGGTCACCAAGGACACTTCTGGAATAAAAATATTAGAAAAATCTTCAAGTTTCAGAATCACCTCCACTCTTCTCGACAGTGTTTGGCTGCACAAAAAGACGTCTCGGCTTGCGGCGAGCGATACAGACATCACGCCAGTGGAGCTCAGTTTCCCCAACAGCTCCATAGGACTCGAAGAGCTTCTTTCCACCCTCAAAATCTCCAGTCGATTTGTAAGCTTGAAGTTTACGAAGGAATTCAACGACAGCTGGACGACCGACAGAATCGATCAAGTTGCGATCGAGCTTGAAGTGGAGATCAGCCTTTCCATCCTCTCCTTTCGTCTCTTCAATCTTCACGAATTCTTTTCCAGCCTCTAACACCACTTTGGTGAGAACGTAGCGAGCGTAACAATGGGCTTGTCCCCACTTCTTCTGGTCGGCTTGAT</canonical>
            <polymorphic>TCTGCACGATTCTCACATCTGAAGTTCAAAAATCAAAAATCATAATTTCATTCAACACTTACAAAATCCAGAGCTTCGAATTCTCATGCGAAACGGAAATCACTCCGATTTGCCCTCCAAAACGGAAACTCCAAACTCCAACTAGCGACCGATTATGAGCTTTAAAAAAGAAACAGAGTTGATCATTCAGAAGTTCAAAGTACCTTTTTCATACTTTCCCACCATTCTGGCCTTTGGTATGTCTTCATCGTTCATAGAATCGTCCATTCTGGATCTACGGGTAATTTTAATAATCAAGGAAAAAGCTATTTAAATAAAATCATTGGTTGAAAACCTTCGGTAGTACAAAAAAAAAGACAGATTTTAAATTAGCAAACTAATTTTATAAACAAAATCATGAAAAAATCACAAACAACCTTATGCTTAAAAACCGATAAAAGAAAAATAAATTAAAGAGAAAATTGATCTAGAACCACTTTTGATCGTTCTTCCAGCATGCRTGTAGATCTTCAATTGCAGCCGAGTCGTACCGCTCAACGAACGACTTGATGACACCAGATGCATCAGATGGGTAGGTCACCAAGGACACTTCTGGAATAAAAATATTAGAAAAATCTTCAAGTTTCAGAATCACCTCCACTCTTCTCGACAGTGTTTGGCTGCACAAAAAGACGTCTCGGCTTGCGGCGAGCGATACAGACATCACGCCAGTGGAGCTCAGTTTCCCCAACAGCTCCATAGGACTCGAAGAGCTTCTTTCCACCCTCAAAATCTCCAGTCGATTTGTAAGCTTGAAGTTTACGAAGGAATTCAACGACAGCTGGACGACCGACAGAATCGATCAAGTTGCGATCGAGCTTGAAGTGGAGATCAGCCTTTCCATCCTCTCCTTTCGTCTCTTCAATCTTCACGAATTCTTTTCCAGCCTCTAACACCACTTTGGTGAGAACGTAGCGAGCGTAACAATGGGCTTGTCCCCACTTCTTCTGGTCGGCTTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>187 119 104 67 52 49 45 45 44 42 41 35 27 25 24 20 15 10 9 9 8 8 6 6 3</canonical_bands>
                <polymorphic_bands>187 119 104 79 67 49 45 45 44 42 41 35 25 24 20 15 10 9 9 8 8 6 6 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTATGCTTAAAAACCGATAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCAAACACTGTCGAGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTTATGCTTAAAAACCGATAAAAGAAAAATAAATTAAAGAGAAAATTGATCTAGAACCACTTTTGATCGTTCTTCCAGCATGCGTGTAGATCTTCAATTGCAGCCGAGTCGTACCGCTCAACGAACGACTTGATGACACCAGATGCATCAGATGGGTAGGTCACCAAGGACACTTCTGGAATAAAAATATTAGAAAAATCTTCAAGTTTCAGAATCACCTCCACTCTTCTCGACAGTGTTTGG</canonical_amplicon>
		<polymorphic_amplicon>CTTATGCTTAAAAACCGATAAAAGAAAAATAAATTAAAGAGAAAATTGATCTAGAACCACTTTTGATCGTTCTTCCAGCATGCRTGTAGATCTTCAATTGCAGCCGAGTCGTACCGCTCAACGAACGACTTGATGACACCAGATGCATCAGATGGGTAGGTCACCAAGGACACTTCTGGAATAAAAATATTAGAAAAATCTTCAAGTTTCAGAATCACCTCCACTCTTCTCGACAGTGTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1208</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>498517</contig_pos>
        <strand></strand>
        <context>AAATCACAAA[C/A]AACCTTATGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTAAATTAGCAAACTAATTTTATAAACAAAATCATGAAAAAATCACAAA</left_flank>
        <right_flank>AACCTTATGCTTAAAAACCGATAAAAGAAAAATAAATTAAAGAGAAAATT</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTGTCCATCCACAGAAACATCTGCCGACTGTATAGCAGTTTGTGACGTTGTCAGAATCATCTTCTCGTCCAAAAATATACTATCTTCTGCACGATTCTCACATCTGAAGTTCAAAAATCAAAAATCATAATTTCATTCAACACTTACAAAATCCAGAGCTTCGAATTCTCATGCGAAACGGAAATCACTCCGATTTGCCCTCCAAAACGGAAACTCCAAACTCCAACTAGCGACCGATTATGAGCTTTAAAAAAGAAACAGAGTTGATCATTCAGAAGTTCAAAGTACCTTTTTCATACTTTCCCACCATTCTGGCCTTTGGTATGTCTTCATCGTTCATAGAATCGTCCATTCTGGATCTACGGGTAATTTTAATAATCAAGGAAAAAGCTATTTAAATAAAATCATTGGTTGAAAACCTTCGGTAGTACAAAAAAAAAGACAGATTTTAAATTAGCAAACTAATTTTATAAACAAAATCATGAAAAAATCACAAACAACCTTATGCTTAAAAACCGATAAAAGAAAAATAAATTAAAGAGAAAATTGATCTAGAACCACTTTTGATCGTTCTTCCAGCATGCGTGTAGATCTTCAATTGCAGCCGAGTCGTACCGCTCAACGAACGACTTGATGACACCAGATGCATCAGATGGGTAGGTCACCAAGGACACTTCTGGAATAAAAATATTAGAAAAATCTTCAAGTTTCAGAATCACCTCCACTCTTCTCGACAGTGTTTGGCTGCACAAAAAGACGTCTCGGCTTGCGGCGAGCGATACAGACATCACGCCAGTGGAGCTCAGTTTCCCCAACAGCTCCATAGGACTCGAAGAGCTTCTTTCCACCCTCAAAATCTCCAGTCGATTTGTAAGCTTGAAGTTTACGAAGGAATTCAACGACAGCTGGACGACCGACAGAATCGATCAAGTTGCGATCGAGCTTGAAGTGGAGATCAGCCTTTCCATCCTCTCCTTTCGTCTCTTCAATCTTCACGA</canonical>
            <polymorphic>CACTGTCCATCCACAGAAACATCTGCCGACTGTATAGCAGTTTGTGACGTTGTCAGAATCATCTTCTCGTCCAAAAATATACTATCTTCTGCACGATTCTCACATCTGAAGTTCAAAAATCAAAAATCATAATTTCATTCAACACTTACAAAATCCAGAGCTTCGAATTCTCATGCGAAACGGAAATCACTCCGATTTGCCCTCCAAAACGGAAACTCCAAACTCCAACTAGCGACCGATTATGAGCTTTAAAAAAGAAACAGAGTTGATCATTCAGAAGTTCAAAGTACCTTTTTCATACTTTCCCACCATTCTGGCCTTTGGTATGTCTTCATCGTTCATAGAATCGTCCATTCTGGATCTACGGGTAATTTTAATAATCAAGGAAAAAGCTATTTAAATAAAATCATTGGTTGAAAACCTTCGGTAGTACAAAAAAAAAGACAGATTTTAAATTAGCAAACTAATTTTATAAACAAAATCATGAAAAAATCACAAAMAACCTTATGCTTAAAAACCGATAAAAGAAAAATAAATTAAAGAGAAAATTGATCTAGAACCACTTTTGATCGTTCTTCCAGCATGCGTGTAGATCTTCAATTGCAGCCGAGTCGTACCGCTCAACGAACGACTTGATGACACCAGATGCATCAGATGGGTAGGTCACCAAGGACACTTCTGGAATAAAAATATTAGAAAAATCTTCAAGTTTCAGAATCACCTCCACTCTTCTCGACAGTGTTTGGCTGCACAAAAAGACGTCTCGGCTTGCGGCGAGCGATACAGACATCACGCCAGTGGAGCTCAGTTTCCCCAACAGCTCCATAGGACTCGAAGAGCTTCTTTCCACCCTCAAAATCTCCAGTCGATTTGTAAGCTTGAAGTTTACGAAGGAATTCAACGACAGCTGGACGACCGACAGAATCGATCAAGTTGCGATCGAGCTTGAAGTGGAGATCAGCCTTTCCATCCTCTCCTTTCGTCTCTTCAATCTTCACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTCTTCATCGTTCATAGAATC</pcr_primer_p1>
		<pcr_primer_p2>AAGTGGTTCTAGATCAATTTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>ATGTCTTCATCGTTCATAGAATCGTCCATTCTGGATCTACGGGTAATTTTAATAATCAAGGAAAAAGCTATTTAAATAAAATCATTGGTTGAAAACCTTCGGTAGTACAAAAAAAAAGACAGATTTTAAATTAGCAAACTAATTTTATAAACAAAATCATGAAAAAATCACAAACAACCTTATGCTTAAAAACCGATAAAAGAAAAATAAATTAAAGAGAAAATTGATCTAGAACCACTT</canonical_amplicon>
		<polymorphic_amplicon>ATGTCTTCATCGTTCATAGAATCGTCCATTCTGGATCTACGGGTAATTTTAATAATCAAGGAAAAAGCTATTTAAATAAAATCATTGGTTGAAAACCTTCGGTAGTACAAAAAAAAAGACAGATTTTAAATTAGCAAACTAATTTTATAAACAAAATCATGAAAAAATCACAAAMAACCTTATGCTTAAAAACCGATAAAAGAAAAATAAATTAAAGAGAAAATTGATCTAGAACCACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1215</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>510585</contig_pos>
        <strand>+</strand>
        <context>CCTTAMGARY[C/T]TGTGGATATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTTTTCGTTGCCGGGGTAGCCAAGTGGCAAAGGCGCGGGCCTTAAGAAC</left_flank>
        <right_flank>TGTGGATATATATCCTTTAGGGGTTCGATTCCCCTCCCCGGCAAAGTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTAATCAGTTGATTATAATCATCATTATATTTTAATTATTCATCGAATTTTCGGAATAACTTCTGAATTTCGAAAATTCTGAACAGAAATTCGCAAATGTGAAAGCCCGAATTCAAAGAATTGGATTCAGAAATTCAGCAATTCGAAAACCTAAAATTCTAGAACTTTAGTTCTATTCTGATTTGCAACCGTAAGATATTTTAAACTCCCAAATTTTTAAGTTTTTGAGTCTCCAAATCTAGACTTCCTCGATTTCCGACACTTTAAATTTCTGGGCTCTTCAAAAAAAATTTTTTTTGAAGGTAAAAGTCTCTGTAGTGTTTCCTATTAAATTTCCGAATTAATTTTACAAAAAAATAATTCTTGAAAGGGATTTTTTAAATAATACAGCTACAGTAACCCTCTTGCTCACTCTAAATTTACATCATAACATTGAACCGTTTCCTTTGTTTTCGTTGCCGGGGTAGCCAAGTGGCAAAGGCGCGGGCCTTAAGAACCTGTGGATATATATCCTTTAGGGGTTCGATTCCCCTCCCCGGCAAAGTCTTTTGTTTTTATTTATATTTTCGGTGTGCAATACTCCGCAATCGATGAGTCGTCTAGTGATACTATTATTACGAATTCCGGTGAAAGCAACATGTCTTGTCTATTTCACTATACCTTTTTTGAAAAAATTTAATTAGAAAACACGAACTATTTACATCGACCATAAATCTGAGAAAAAAAAGGAACCTAGGATTTACAAGACGTTTTAGTTCGAGGGGTCCCCAACTAATCTGAAAGTGTTCGAGGGGTCCCCAACTAGAAAAACATTACTGTTTGAAACATTCTAATCTGAAATACCACTCGTTTTTCTCTTCACTTTTTATTGAAAAGCTTCAATTCAATCTTAAGGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACTTAAAAATAAAGAAAAAGTTTAAAAAAATCCTTCATCGAGAAAA</canonical>
            <polymorphic>TTTTAATCAGTTGATTATAATCATCATTATATTTTAATTATTCATCGAATTTTCGGAATAACTTCTGAATTTCGAAAATTCTGAACAGAAATTCGCAAATGTGAAAGCCCGAATTCAAAGAATTGGATTCAGAAATTCAGCAATTCGAAAACCTAAAATTCTAGAACTTTAGTTCTATTCTGATTTGCAACCGTAAGATATTTTAAACTCCCAAATTTTTAAGTTTTTGAGTCTCCAAATCTAGACTTCCTCGATTTCCGACACTTTAAATTTCTGGGCTCTTCAAAAAAAATTTTTTTTGAAGGTAAAAGTCTCTGTAGTGTTTCCTATTAAATTTCCGAATTAATTTTACAAAAAAATAATTCTTGAAAGGGATTTTTTAAATAATACAGCTACAGTAACCCTCTTGCTCACTCTAAATTTACATCATAACATTGAACCGTTTCCTTTGTTTTCGTTGCCGGGGTAGCCAAGTGGCAAAGGCGCGGGCCTTAAGAACYTGTGGATATATATCCTTTAGGGGTTCGATTCCCCTCCCCGGCAAAGTCTTTTGTTTTTATTTATATTTTCGGTGTGCAATACTCCGCAATCGATGAGTCGTCTAGTGATACTATTATTACGAATTCCGGTGAAAGCAACATGTCTTGTCTATTTCACTATACCTTTTTTGAAAAAATTTAATTAGAAAACACGAACTATTTACATCGACCATAAATCTGAGAAAAAAAAGGAACCTAGGATTTACAAGACGTTTTAGTTCGAGGGGTCCCCAACTAATCTGAAAGTGTTCGAGGGGTCCCCAACTAGAAAAACATTACTGTTTGAAACATTCTAATCTGAAATACCACTCGTTTTTCTCTTCACTTTTTATTGAAAAGCTTCAATTCAATCTTAAGGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACTTAAAAATAAAGAAAAAGTTTAAAAAAATCCTTCATCGAGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACAGCTACAGTAACCCTCTTG</pcr_primer_p1>
		<pcr_primer_p2>CACCGGAATTCGTAATAATAGT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATACAGCTACAGTAACCCTCTTGCTCACTCTAAATTTACATCATAACATTGAACCGTTTCCTTTGTTTTCGTTGCCGGGGTAGCCAAGTGGCAAAGGCGCGGGCCTTAAGAACCTGTGGATATATATCCTTTAGGGGTTCGATTCCCCTCCCCGGCAAAGTCTTTTGTTTTTATTTATATTTTCGGTGTGCAATACTCCGCAATCGATGAGTCGTCTAGTGATACTATTATTACGAATTCCGGTG</canonical_amplicon>
		<polymorphic_amplicon>ATACAGCTACAGTAACCCTCTTGCTCACTCTAAATTTACATCATAACATTGAACCGTTTCCTTTGTTTTCGTTGCCGGGGTAGCCAAGTGGCAAAGGCGCGGGCCTTAAGAACYTGTGGATATATATCCTTTAGGGGTTCGATTCCCCTCCCCGGCAAAGTCTTTTGTTTTTATTTATATTTTCGGTGTGCAATACTCCGCAATCGATGAGTCGTCTAGTGATACTATTATTACGAATTCCGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1216</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>510584</contig_pos>
        <strand>+</strand>
        <context>GCCTTAMGAR[C/T]YTGTGGATAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGTTTTCGTTGCCGGGGTAGCCAAGTGGCAAAGGCGCGGGCCTTAAGAA</left_flank>
        <right_flank>CTGTGGATATATATCCTTTAGGGGTTCGATTCCCCTCCCCGGCAAAGTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTAATCAGTTGATTATAATCATCATTATATTTTAATTATTCATCGAATTTTCGGAATAACTTCTGAATTTCGAAAATTCTGAACAGAAATTCGCAAATGTGAAAGCCCGAATTCAAAGAATTGGATTCAGAAATTCAGCAATTCGAAAACCTAAAATTCTAGAACTTTAGTTCTATTCTGATTTGCAACCGTAAGATATTTTAAACTCCCAAATTTTTAAGTTTTTGAGTCTCCAAATCTAGACTTCCTCGATTTCCGACACTTTAAATTTCTGGGCTCTTCAAAAAAAATTTTTTTTGAAGGTAAAAGTCTCTGTAGTGTTTCCTATTAAATTTCCGAATTAATTTTACAAAAAAATAATTCTTGAAAGGGATTTTTTAAATAATACAGCTACAGTAACCCTCTTGCTCACTCTAAATTTACATCATAACATTGAACCGTTTCCTTTGTTTTCGTTGCCGGGGTAGCCAAGTGGCAAAGGCGCGGGCCTTAAGAACCTGTGGATATATATCCTTTAGGGGTTCGATTCCCCTCCCCGGCAAAGTCTTTTGTTTTTATTTATATTTTCGGTGTGCAATACTCCGCAATCGATGAGTCGTCTAGTGATACTATTATTACGAATTCCGGTGAAAGCAACATGTCTTGTCTATTTCACTATACCTTTTTTGAAAAAATTTAATTAGAAAACACGAACTATTTACATCGACCATAAATCTGAGAAAAAAAAGGAACCTAGGATTTACAAGACGTTTTAGTTCGAGGGGTCCCCAACTAATCTGAAAGTGTTCGAGGGGTCCCCAACTAGAAAAACATTACTGTTTGAAACATTCTAATCTGAAATACCACTCGTTTTTCTCTTCACTTTTTATTGAAAAGCTTCAATTCAATCTTAAGGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACTTAAAAATAAAGAAAAAGTTTAAAAAAATCCTTCATCGAGAAA</canonical>
            <polymorphic>GTTTTAATCAGTTGATTATAATCATCATTATATTTTAATTATTCATCGAATTTTCGGAATAACTTCTGAATTTCGAAAATTCTGAACAGAAATTCGCAAATGTGAAAGCCCGAATTCAAAGAATTGGATTCAGAAATTCAGCAATTCGAAAACCTAAAATTCTAGAACTTTAGTTCTATTCTGATTTGCAACCGTAAGATATTTTAAACTCCCAAATTTTTAAGTTTTTGAGTCTCCAAATCTAGACTTCCTCGATTTCCGACACTTTAAATTTCTGGGCTCTTCAAAAAAAATTTTTTTTGAAGGTAAAAGTCTCTGTAGTGTTTCCTATTAAATTTCCGAATTAATTTTACAAAAAAATAATTCTTGAAAGGGATTTTTTAAATAATACAGCTACAGTAACCCTCTTGCTCACTCTAAATTTACATCATAACATTGAACCGTTTCCTTTGTTTTCGTTGCCGGGGTAGCCAAGTGGCAAAGGCGCGGGCCTTAAGAAYCTGTGGATATATATCCTTTAGGGGTTCGATTCCCCTCCCCGGCAAAGTCTTTTGTTTTTATTTATATTTTCGGTGTGCAATACTCCGCAATCGATGAGTCGTCTAGTGATACTATTATTACGAATTCCGGTGAAAGCAACATGTCTTGTCTATTTCACTATACCTTTTTTGAAAAAATTTAATTAGAAAACACGAACTATTTACATCGACCATAAATCTGAGAAAAAAAAGGAACCTAGGATTTACAAGACGTTTTAGTTCGAGGGGTCCCCAACTAATCTGAAAGTGTTCGAGGGGTCCCCAACTAGAAAAACATTACTGTTTGAAACATTCTAATCTGAAATACCACTCGTTTTTCTCTTCACTTTTTATTGAAAAGCTTCAATTCAATCTTAAGGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACTTAAAAATAAAGAAAAAGTTTAAAAAAATCCTTCATCGAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACAGCTACAGTAACCCTCTTG</pcr_primer_p1>
		<pcr_primer_p2>CACCGGAATTCGTAATAATAGT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATACAGCTACAGTAACCCTCTTGCTCACTCTAAATTTACATCATAACATTGAACCGTTTCCTTTGTTTTCGTTGCCGGGGTAGCCAAGTGGCAAAGGCGCGGGCCTTAAGAACCTGTGGATATATATCCTTTAGGGGTTCGATTCCCCTCCCCGGCAAAGTCTTTTGTTTTTATTTATATTTTCGGTGTGCAATACTCCGCAATCGATGAGTCGTCTAGTGATACTATTATTACGAATTCCGGTG</canonical_amplicon>
		<polymorphic_amplicon>ATACAGCTACAGTAACCCTCTTGCTCACTCTAAATTTACATCATAACATTGAACCGTTTCCTTTGTTTTCGTTGCCGGGGTAGCCAAGTGGCAAAGGCGCGGGCCTTAAGAAYCTGTGGATATATATCCTTTAGGGGTTCGATTCCCCTCCCCGGCAAAGTCTTTTGTTTTTATTTATATTTTCGGTGTGCAATACTCCGCAATCGATGAGTCGTCTAGTGATACTATTATTACGAATTCCGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1217</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>510583</contig_pos>
        <strand>+</strand>
        <context>RGCCTTAMGA[A/G]YYTGTGGATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGTTTTCGTTGCCGGGGTAGCCAAGTGGCAAAGGCGCGGGCCTTAAGA</left_flank>
        <right_flank>CCTGTGGATATATATCCTTTAGGGGTTCGATTCCCCTCCCCGGCAAAGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTTTAATCAGTTGATTATAATCATCATTATATTTTAATTATTCATCGAATTTTCGGAATAACTTCTGAATTTCGAAAATTCTGAACAGAAATTCGCAAATGTGAAAGCCCGAATTCAAAGAATTGGATTCAGAAATTCAGCAATTCGAAAACCTAAAATTCTAGAACTTTAGTTCTATTCTGATTTGCAACCGTAAGATATTTTAAACTCCCAAATTTTTAAGTTTTTGAGTCTCCAAATCTAGACTTCCTCGATTTCCGACACTTTAAATTTCTGGGCTCTTCAAAAAAAATTTTTTTTGAAGGTAAAAGTCTCTGTAGTGTTTCCTATTAAATTTCCGAATTAATTTTACAAAAAAATAATTCTTGAAAGGGATTTTTTAAATAATACAGCTACAGTAACCCTCTTGCTCACTCTAAATTTACATCATAACATTGAACCGTTTCCTTTGTTTTCGTTGCCGGGGTAGCCAAGTGGCAAAGGCGCGGGCCTTAAGAACCTGTGGATATATATCCTTTAGGGGTTCGATTCCCCTCCCCGGCAAAGTCTTTTGTTTTTATTTATATTTTCGGTGTGCAATACTCCGCAATCGATGAGTCGTCTAGTGATACTATTATTACGAATTCCGGTGAAAGCAACATGTCTTGTCTATTTCACTATACCTTTTTTGAAAAAATTTAATTAGAAAACACGAACTATTTACATCGACCATAAATCTGAGAAAAAAAAGGAACCTAGGATTTACAAGACGTTTTAGTTCGAGGGGTCCCCAACTAATCTGAAAGTGTTCGAGGGGTCCCCAACTAGAAAAACATTACTGTTTGAAACATTCTAATCTGAAATACCACTCGTTTTTCTCTTCACTTTTTATTGAAAAGCTTCAATTCAATCTTAAGGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACTTAAAAATAAAGAAAAAGTTTAAAAAAATCCTTCATCGAGAA</canonical>
            <polymorphic>GGTTTTAATCAGTTGATTATAATCATCATTATATTTTAATTATTCATCGAATTTTCGGAATAACTTCTGAATTTCGAAAATTCTGAACAGAAATTCGCAAATGTGAAAGCCCGAATTCAAAGAATTGGATTCAGAAATTCAGCAATTCGAAAACCTAAAATTCTAGAACTTTAGTTCTATTCTGATTTGCAACCGTAAGATATTTTAAACTCCCAAATTTTTAAGTTTTTGAGTCTCCAAATCTAGACTTCCTCGATTTCCGACACTTTAAATTTCTGGGCTCTTCAAAAAAAATTTTTTTTGAAGGTAAAAGTCTCTGTAGTGTTTCCTATTAAATTTCCGAATTAATTTTACAAAAAAATAATTCTTGAAAGGGATTTTTTAAATAATACAGCTACAGTAACCCTCTTGCTCACTCTAAATTTACATCATAACATTGAACCGTTTCCTTTGTTTTCGTTGCCGGGGTAGCCAAGTGGCAAAGGCGCGGGCCTTAAGARCCTGTGGATATATATCCTTTAGGGGTTCGATTCCCCTCCCCGGCAAAGTCTTTTGTTTTTATTTATATTTTCGGTGTGCAATACTCCGCAATCGATGAGTCGTCTAGTGATACTATTATTACGAATTCCGGTGAAAGCAACATGTCTTGTCTATTTCACTATACCTTTTTTGAAAAAATTTAATTAGAAAACACGAACTATTTACATCGACCATAAATCTGAGAAAAAAAAGGAACCTAGGATTTACAAGACGTTTTAGTTCGAGGGGTCCCCAACTAATCTGAAAGTGTTCGAGGGGTCCCCAACTAGAAAAACATTACTGTTTGAAACATTCTAATCTGAAATACCACTCGTTTTTCTCTTCACTTTTTATTGAAAAGCTTCAATTCAATCTTAAGGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACTTAAAAATAAAGAAAAAGTTTAAAAAAATCCTTCATCGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACAGCTACAGTAACCCTCTTG</pcr_primer_p1>
		<pcr_primer_p2>CACCGGAATTCGTAATAATAGT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATACAGCTACAGTAACCCTCTTGCTCACTCTAAATTTACATCATAACATTGAACCGTTTCCTTTGTTTTCGTTGCCGGGGTAGCCAAGTGGCAAAGGCGCGGGCCTTAAGAACCTGTGGATATATATCCTTTAGGGGTTCGATTCCCCTCCCCGGCAAAGTCTTTTGTTTTTATTTATATTTTCGGTGTGCAATACTCCGCAATCGATGAGTCGTCTAGTGATACTATTATTACGAATTCCGGTG</canonical_amplicon>
		<polymorphic_amplicon>ATACAGCTACAGTAACCCTCTTGCTCACTCTAAATTTACATCATAACATTGAACCGTTTCCTTTGTTTTCGTTGCCGGGGTAGCCAAGTGGCAAAGGCGCGGGCCTTAAGARCCTGTGGATATATATCCTTTAGGGGTTCGATTCCCCTCCCCGGCAAAGTCTTTTGTTTTTATTTATATTTTCGGTGTGCAATACTCCGCAATCGATGAGTCGTCTAGTGATACTATTATTACGAATTCCGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1218</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>510580</contig_pos>
        <strand>+</strand>
        <context>GCGRGCCTTA[A/C]GARYYTGTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCTTTGTTTTCGTTGCCGGGGTAGCCAAGTGGCAAAGGCGCGGGCCTTA</left_flank>
        <right_flank>GAACCTGTGGATATATATCCTTTAGGGGTTCGATTCCCCTCCCCGGCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGGTTTTAATCAGTTGATTATAATCATCATTATATTTTAATTATTCATCGAATTTTCGGAATAACTTCTGAATTTCGAAAATTCTGAACAGAAATTCGCAAATGTGAAAGCCCGAATTCAAAGAATTGGATTCAGAAATTCAGCAATTCGAAAACCTAAAATTCTAGAACTTTAGTTCTATTCTGATTTGCAACCGTAAGATATTTTAAACTCCCAAATTTTTAAGTTTTTGAGTCTCCAAATCTAGACTTCCTCGATTTCCGACACTTTAAATTTCTGGGCTCTTCAAAAAAAATTTTTTTTGAAGGTAAAAGTCTCTGTAGTGTTTCCTATTAAATTTCCGAATTAATTTTACAAAAAAATAATTCTTGAAAGGGATTTTTTAAATAATACAGCTACAGTAACCCTCTTGCTCACTCTAAATTTACATCATAACATTGAACCGTTTCCTTTGTTTTCGTTGCCGGGGTAGCCAAGTGGCAAAGGCGCGGGCCTTAAGAACCTGTGGATATATATCCTTTAGGGGTTCGATTCCCCTCCCCGGCAAAGTCTTTTGTTTTTATTTATATTTTCGGTGTGCAATACTCCGCAATCGATGAGTCGTCTAGTGATACTATTATTACGAATTCCGGTGAAAGCAACATGTCTTGTCTATTTCACTATACCTTTTTTGAAAAAATTTAATTAGAAAACACGAACTATTTACATCGACCATAAATCTGAGAAAAAAAAGGAACCTAGGATTTACAAGACGTTTTAGTTCGAGGGGTCCCCAACTAATCTGAAAGTGTTCGAGGGGTCCCCAACTAGAAAAACATTACTGTTTGAAACATTCTAATCTGAAATACCACTCGTTTTTCTCTTCACTTTTTATTGAAAAGCTTCAATTCAATCTTAAGGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACTTAAAAATAAAGAAAAAGTTTAAAAAAATCCTTCATCGA</canonical>
            <polymorphic>TTTGGTTTTAATCAGTTGATTATAATCATCATTATATTTTAATTATTCATCGAATTTTCGGAATAACTTCTGAATTTCGAAAATTCTGAACAGAAATTCGCAAATGTGAAAGCCCGAATTCAAAGAATTGGATTCAGAAATTCAGCAATTCGAAAACCTAAAATTCTAGAACTTTAGTTCTATTCTGATTTGCAACCGTAAGATATTTTAAACTCCCAAATTTTTAAGTTTTTGAGTCTCCAAATCTAGACTTCCTCGATTTCCGACACTTTAAATTTCTGGGCTCTTCAAAAAAAATTTTTTTTGAAGGTAAAAGTCTCTGTAGTGTTTCCTATTAAATTTCCGAATTAATTTTACAAAAAAATAATTCTTGAAAGGGATTTTTTAAATAATACAGCTACAGTAACCCTCTTGCTCACTCTAAATTTACATCATAACATTGAACCGTTTCCTTTGTTTTCGTTGCCGGGGTAGCCAAGTGGCAAAGGCGCGGGCCTTAMGAACCTGTGGATATATATCCTTTAGGGGTTCGATTCCCCTCCCCGGCAAAGTCTTTTGTTTTTATTTATATTTTCGGTGTGCAATACTCCGCAATCGATGAGTCGTCTAGTGATACTATTATTACGAATTCCGGTGAAAGCAACATGTCTTGTCTATTTCACTATACCTTTTTTGAAAAAATTTAATTAGAAAACACGAACTATTTACATCGACCATAAATCTGAGAAAAAAAAGGAACCTAGGATTTACAAGACGTTTTAGTTCGAGGGGTCCCCAACTAATCTGAAAGTGTTCGAGGGGTCCCCAACTAGAAAAACATTACTGTTTGAAACATTCTAATCTGAAATACCACTCGTTTTTCTCTTCACTTTTTATTGAAAAGCTTCAATTCAATCTTAAGGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACTTAAAAATAAAGAAAAAGTTTAAAAAAATCCTTCATCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTTAAG</site>
                <isoschizomers>
                    <enzyme>AflII</enzyme>
                    <enzyme>BfrI</enzyme>
                    <enzyme>BspTI</enzyme>
                    <enzyme>Bst98I</enzyme>
                    <enzyme>MspCI</enzyme>
                    <enzyme>Vha464I</enzyme>
                </isoschizomers>
                <canonical_bands>496 400 104</canonical_bands>
                <polymorphic_bands>896 104</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>214 186 169 112 65 64 47 37 31 19 19 16 13 8</canonical_bands>
                <polymorphic_bands>298 214 169 65 64 47 37 31 19 19 16 13 8</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>496 400 104</canonical_bands>
                <polymorphic_bands>896 104</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACAGCTACAGTAACCCTCTTG</pcr_primer_p1>
		<pcr_primer_p2>CACCGGAATTCGTAATAATAGT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATACAGCTACAGTAACCCTCTTGCTCACTCTAAATTTACATCATAACATTGAACCGTTTCCTTTGTTTTCGTTGCCGGGGTAGCCAAGTGGCAAAGGCGCGGGCCTTAAGAACCTGTGGATATATATCCTTTAGGGGTTCGATTCCCCTCCCCGGCAAAGTCTTTTGTTTTTATTTATATTTTCGGTGTGCAATACTCCGCAATCGATGAGTCGTCTAGTGATACTATTATTACGAATTCCGGTG</canonical_amplicon>
		<polymorphic_amplicon>ATACAGCTACAGTAACCCTCTTGCTCACTCTAAATTTACATCATAACATTGAACCGTTTCCTTTGTTTTCGTTGCCGGGGTAGCCAAGTGGCAAAGGCGCGGGCCTTAMGAACCTGTGGATATATATCCTTTAGGGGTTCGATTCCCCTCCCCGGCAAAGTCTTTTGTTTTTATTTATATTTTCGGTGTGCAATACTCCGCAATCGATGAGTCGTCTAGTGATACTATTATTACGAATTCCGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1219</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>510573</contig_pos>
        <strand>+</strand>
        <context>CAAAGGCGCG[A/G]GCCTTAMGAR</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACCGTTTCCTTTGTTTTCGTTGCCGGGGTAGCCAAGTGGCAAAGGCGCG</left_flank>
        <right_flank>GCCTTAAGAACCTGTGGATATATATCCTTTAGGGGTTCGATTCCCCTCCC</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAAAATTTGGTTTTAATCAGTTGATTATAATCATCATTATATTTTAATTATTCATCGAATTTTCGGAATAACTTCTGAATTTCGAAAATTCTGAACAGAAATTCGCAAATGTGAAAGCCCGAATTCAAAGAATTGGATTCAGAAATTCAGCAATTCGAAAACCTAAAATTCTAGAACTTTAGTTCTATTCTGATTTGCAACCGTAAGATATTTTAAACTCCCAAATTTTTAAGTTTTTGAGTCTCCAAATCTAGACTTCCTCGATTTCCGACACTTTAAATTTCTGGGCTCTTCAAAAAAAATTTTTTTTGAAGGTAAAAGTCTCTGTAGTGTTTCCTATTAAATTTCCGAATTAATTTTACAAAAAAATAATTCTTGAAAGGGATTTTTTAAATAATACAGCTACAGTAACCCTCTTGCTCACTCTAAATTTACATCATAACATTGAACCGTTTCCTTTGTTTTCGTTGCCGGGGTAGCCAAGTGGCAAAGGCGCGGGCCTTAAGAACCTGTGGATATATATCCTTTAGGGGTTCGATTCCCCTCCCCGGCAAAGTCTTTTGTTTTTATTTATATTTTCGGTGTGCAATACTCCGCAATCGATGAGTCGTCTAGTGATACTATTATTACGAATTCCGGTGAAAGCAACATGTCTTGTCTATTTCACTATACCTTTTTTGAAAAAATTTAATTAGAAAACACGAACTATTTACATCGACCATAAATCTGAGAAAAAAAAGGAACCTAGGATTTACAAGACGTTTTAGTTCGAGGGGTCCCCAACTAATCTGAAAGTGTTCGAGGGGTCCCCAACTAGAAAAACATTACTGTTTGAAACATTCTAATCTGAAATACCACTCGTTTTTCTCTTCACTTTTTATTGAAAAGCTTCAATTCAATCTTAAGGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACTTAAAAATAAAGAAAAAGTTTAAAAAAATCCT</canonical>
            <polymorphic>TCCAAAATTTGGTTTTAATCAGTTGATTATAATCATCATTATATTTTAATTATTCATCGAATTTTCGGAATAACTTCTGAATTTCGAAAATTCTGAACAGAAATTCGCAAATGTGAAAGCCCGAATTCAAAGAATTGGATTCAGAAATTCAGCAATTCGAAAACCTAAAATTCTAGAACTTTAGTTCTATTCTGATTTGCAACCGTAAGATATTTTAAACTCCCAAATTTTTAAGTTTTTGAGTCTCCAAATCTAGACTTCCTCGATTTCCGACACTTTAAATTTCTGGGCTCTTCAAAAAAAATTTTTTTTGAAGGTAAAAGTCTCTGTAGTGTTTCCTATTAAATTTCCGAATTAATTTTACAAAAAAATAATTCTTGAAAGGGATTTTTTAAATAATACAGCTACAGTAACCCTCTTGCTCACTCTAAATTTACATCATAACATTGAACCGTTTCCTTTGTTTTCGTTGCCGGGGTAGCCAAGTGGCAAAGGCGCGRGCCTTAAGAACCTGTGGATATATATCCTTTAGGGGTTCGATTCCCCTCCCCGGCAAAGTCTTTTGTTTTTATTTATATTTTCGGTGTGCAATACTCCGCAATCGATGAGTCGTCTAGTGATACTATTATTACGAATTCCGGTGAAAGCAACATGTCTTGTCTATTTCACTATACCTTTTTTGAAAAAATTTAATTAGAAAACACGAACTATTTACATCGACCATAAATCTGAGAAAAAAAAGGAACCTAGGATTTACAAGACGTTTTAGTTCGAGGGGTCCCCAACTAATCTGAAAGTGTTCGAGGGGTCCCCAACTAGAAAAACATTACTGTTTGAAACATTCTAATCTGAAATACCACTCGTTTTTCTCTTCACTTTTTATTGAAAAGCTTCAATTCAATCTTAAGGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACTTAAAAATAAAGAAAAAGTTTAAAAAAATCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>499 278 193 30</canonical_bands>
                <polymorphic_bands>777 193 30</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>389 171 119 114 110 77 20</canonical_bands>
                <polymorphic_bands>409 171 119 114 110 77</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACAGCTACAGTAACCCTCTTG</pcr_primer_p1>
		<pcr_primer_p2>CACCGGAATTCGTAATAATAGT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATACAGCTACAGTAACCCTCTTGCTCACTCTAAATTTACATCATAACATTGAACCGTTTCCTTTGTTTTCGTTGCCGGGGTAGCCAAGTGGCAAAGGCGCGGGCCTTAAGAACCTGTGGATATATATCCTTTAGGGGTTCGATTCCCCTCCCCGGCAAAGTCTTTTGTTTTTATTTATATTTTCGGTGTGCAATACTCCGCAATCGATGAGTCGTCTAGTGATACTATTATTACGAATTCCGGTG</canonical_amplicon>
		<polymorphic_amplicon>ATACAGCTACAGTAACCCTCTTGCTCACTCTAAATTTACATCATAACATTGAACCGTTTCCTTTGTTTTCGTTGCCGGGGTAGCCAAGTGGCAAAGGCGCGRGCCTTAAGAACCTGTGGATATATATCCTTTAGGGGTTCGATTCCCCTCCCCGGCAAAGTCTTTTGTTTTTATTTATATTTTCGGTGTGCAATACTCCGCAATCGATGAGTCGTCTAGTGATACTATTATTACGAATTCCGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1220</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>522446</contig_pos>
        <strand>+</strand>
        <context>TGTAGTAGAG[A/G]GACGGGAAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGAAATCGATGCGAGTTCCGTTGAATTCCTCGCTTTGTTTGTAGTAGAG</left_flank>
        <right_flank>GACGGGAAGTACCACTTTCGACTATGCTTCGTGTACTCGATTTCAGCAGT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGTTAAAACACTCACTTGAATTTCAAATTATCTTTACTGAATTCTTTGACATGTTTCGTCGAGGCATCTGCACGAGAAGCGGCTCCCGAAACTAAGTAGTGAATTTTGTGACCCTCATTTCCATCGTATTCGAAGTGCTGCAAGGAATGGTCGTGTCCTGAGAAGTATGCATTGACGTTGTATCGCTTCAATAGTGGATCGAGTCGAATACGGAGGCATTCTGTTGGCCCATGGGATGACATGGAATGCATTGGATAATGGCCAGATACAATCAAATATTGGGCACTGCTTTGACTCAACATCGTCTCCAGCCATGTCCACTGCTCCTCAGCGGCACTCACATTCGCCGGACCTCTCGGATCATGGGACTCATTTCGCAGCATTTCGATGAAGCCAGCATTTTGGATATCTTTAGTGTTTCCACACAATGAAATTGTATCAATCATAATGAAATCGATGCGAGTTCCGTTGAATTCCTCGCTTTGTTTGTAGTAGAGAGACGGGAAGTACCACTTTCGACTATGCTTCGTGTACTCGATTTCAGCAGTAACGTTCCCAAAATGATCATGATTTCCGGCGATTGTAAGCCATTTGACTTGGAGGCTCGGAGAGTCGTAGACTGCCTCGAATCGGGTCTGGAACGAAATTTATTACATTTTAACGATGCATTGATGTGGTCTCACAACGAAAACCACCGTAATCTAAGAATATGTCTGTTTTCCGGATTTTATATCTCTATTTTCGTACAGACTAAAACAGAAAAATCTACAAAAAAAACAGAATTTTTAGGTTACTGTAGTTGTCGTTGTGGGACCATTTTTGTACAGAAATAATATACAACTGTAGCAGAGAATGTGGCAAATCGCTATCACACAATAAAAAGAGAACAATATATGACTCATTCCATGCATTTCTTCCATTCTCTCTTTTTTTATAACCACTCTATTTTTTCTACATTTTTTTTCTCATTTTCTCACCTCAAATCTCGGATCGAATTC</canonical>
            <polymorphic>ATAGTTAAAACACTCACTTGAATTTCAAATTATCTTTACTGAATTCTTTGACATGTTTCGTCGAGGCATCTGCACGAGAAGCGGCTCCCGAAACTAAGTAGTGAATTTTGTGACCCTCATTTCCATCGTATTCGAAGTGCTGCAAGGAATGGTCGTGTCCTGAGAAGTATGCATTGACGTTGTATCGCTTCAATAGTGGATCGAGTCGAATACGGAGGCATTCTGTTGGCCCATGGGATGACATGGAATGCATTGGATAATGGCCAGATACAATCAAATATTGGGCACTGCTTTGACTCAACATCGTCTCCAGCCATGTCCACTGCTCCTCAGCGGCACTCACATTCGCCGGACCTCTCGGATCATGGGACTCATTTCGCAGCATTTCGATGAAGCCAGCATTTTGGATATCTTTAGTGTTTCCACACAATGAAATTGTATCAATCATAATGAAATCGATGCGAGTTCCGTTGAATTCCTCGCTTTGTTTGTAGTAGAGRGACGGGAAGTACCACTTTCGACTATGCTTCGTGTACTCGATTTCAGCAGTAACGTTCCCAAAATGATCATGATTTCCGGCGATTGTAAGCCATTTGACTTGGAGGCTCGGAGAGTCGTAGACTGCCTCGAATCGGGTCTGGAACGAAATTTATTACATTTTAACGATGCATTGATGTGGTCTCACAACGAAAACCACCGTAATCTAAGAATATGTCTGTTTTCCGGATTTTATATCTCTATTTTCGTACAGACTAAAACAGAAAAATCTACAAAAAAAACAGAATTTTTAGGTTACTGTAGTTGTCGTTGTGGGACCATTTTTGTACAGAAATAATATACAACTGTAGCAGAGAATGTGGCAAATCGCTATCACACAATAAAAAGAGAACAATATATGACTCATTCCATGCATTTCTTCCATTCTCTCTTTTTTTATAACCACTCTATTTTTTCTACATTTTTTTTCTCATTTTCTCACCTCAAATCTCGGATCGAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGTGTTTCCACACAATGAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATGTAATAAATTTCGTTCCAGAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTAGTGTTTCCACACAATGAAATTGTATCAATCATAATGAAATCGATGCGAGTTCCGTTGAATTCCTCGCTTTGTTTGTAGTAGAGAGACGGGAAGTACCACTTTCGACTATGCTTCGTGTACTCGATTTCAGCAGTAACGTTCCCAAAATGATCATGATTTCCGGCGATTGTAAGCCATTTGACTTGGAGGCTCGGAGAGTCGTAGACTGCCTCGAATCGGGTCTGGAACGAAATTTATTACAT</canonical_amplicon>
		<polymorphic_amplicon>TTAGTGTTTCCACACAATGAAATTGTATCAATCATAATGAAATCGATGCGAGTTCCGTTGAATTCCTCGCTTTGTTTGTAGTAGAGRGACGGGAAGTACCACTTTCGACTATGCTTCGTGTACTCGATTTCAGCAGTAACGTTCCCAAAATGATCATGATTTCCGGCGATTGTAAGCCATTTGACTTGGAGGCTCGGAGAGTCGTAGACTGCCTCGAATCGGGTCTGGAACGAAATTTATTACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1221</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>560988</contig_pos>
        <strand>+</strand>
        <context>CGAAGTTCGG[A/G]GTAGTCTAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAGGAAGCTCAAATCGTAACTGCATGTGAAGTCGGCAATCGAAGTTCGG</left_flank>
        <right_flank>GTAGTCTAGAAGCAGGTAGAGTGAGTTATTTAGTTTCAATACTTGAATTT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGGTCCAGACGACGACGACTCGCGCATTTTTAATGGTTTTACCCTGGGATTGGTACGAGGATTTGAGACGATAAATATGTAAATTGGATAATTGAAAAGAAAGAAATAGGTCTTAAGAGAAAACGGACGAAGATTATAGGGATGTTATTTCCTGAATTTTCCAAAATCTTTTTAAGAACGAAGTTCTGGGAACGGTACTCTGCGAGCAATTATGACCCAGAAAATCTATAGTCAAATATTTTTTGCTTTCAGTATTTATTCTATTTTTCAGATTATTTTTTGTTTCGCTTCCAGATTTTCTACAGAGATTACTGTAATTCCATAGCGCTCTTGCCTTACTGATTTTTTTTTCACAATTTTTTCCTTCAATTCCCGCGATGTTTCTCGGTATTAAGACACCTTTTCGCTTTGCATTCAAAAATCTGAATCAACTGCAATTTTAATTTTTCAGGAAGCTCAAATCGTAACTGCATGTGAAGTCGGCAATCGAAGTTCGGGGTAGTCTAGAAGCAGGTAGAGTGAGTTATTTAGTTTCAATACTTGAATTTCGTATTAATTTTCGCCGTTTTGCACCTCTTATTAGTTCCATTTACCGTAAACACTGTAATATAAGACCACGATATATTACTTGTACTTTGATCTCATATATCCCGGTTCCTGTAACAGGTATCAAAAGTGATCAACCGACAAAATGTTTATCAAAATACCAACAAGATTTTATTAGTTGACACATTTTTCATATCTCTTTTAGAAATTGAGATAATTGAGCTCAAAGTCCAAGTGTAGGGTCGCCTTCTATTAGAGTGTTTACGGTAGTTACAGTGACCAATAATCCTTCTCTTCTGTATATTTACCTCCATGATCGCCTGAATCTCGGAATTTCCATAATTTTTTCAGGTTTTTCAACTGTCCATTGACCGCTCATGATGACATTTTTCAGAGAAAAGGTGGATCCGTTTCCGTTTTGTCTCATTTACCCACACAAAATGTTTATTTCA</canonical>
            <polymorphic>GGTGGTCCAGACGACGACGACTCGCGCATTTTTAATGGTTTTACCCTGGGATTGGTACGAGGATTTGAGACGATAAATATGTAAATTGGATAATTGAAAAGAAAGAAATAGGTCTTAAGAGAAAACGGACGAAGATTATAGGGATGTTATTTCCTGAATTTTCCAAAATCTTTTTAAGAACGAAGTTCTGGGAACGGTACTCTGCGAGCAATTATGACCCAGAAAATCTATAGTCAAATATTTTTTGCTTTCAGTATTTATTCTATTTTTCAGATTATTTTTTGTTTCGCTTCCAGATTTTCTACAGAGATTACTGTAATTCCATAGCGCTCTTGCCTTACTGATTTTTTTTTCACAATTTTTTCCTTCAATTCCCGCGATGTTTCTCGGTATTAAGACACCTTTTCGCTTTGCATTCAAAAATCTGAATCAACTGCAATTTTAATTTTTCAGGAAGCTCAAATCGTAACTGCATGTGAAGTCGGCAATCGAAGTTCGGRGTAGTCTAGAAGCAGGTAGAGTGAGTTATTTAGTTTCAATACTTGAATTTCGTATTAATTTTCGCCGTTTTGCACCTCTTATTAGTTCCATTTACCGTAAACACTGTAATATAAGACCACGATATATTACTTGTACTTTGATCTCATATATCCCGGTTCCTGTAACAGGTATCAAAAGTGATCAACCGACAAAATGTTTATCAAAATACCAACAAGATTTTATTAGTTGACACATTTTTCATATCTCTTTTAGAAATTGAGATAATTGAGCTCAAAGTCCAAGTGTAGGGTCGCCTTCTATTAGAGTGTTTACGGTAGTTACAGTGACCAATAATCCTTCTCTTCTGTATATTTACCTCCATGATCGCCTGAATCTCGGAATTTCCATAATTTTTTCAGGTTTTTCAACTGTCCATTGACCGCTCATGATGACATTTTTCAGAGAAAAGGTGGATCCGTTTCCGTTTTGTCTCATTTACCCACACAAAATGTTTATTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTCCAGATTTTCTACAGAGAT</pcr_primer_p1>
		<pcr_primer_p2>CGAAAATTAATACGAAATTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>276</pcr_amplicon_size>
		<canonical_amplicon>GCTTCCAGATTTTCTACAGAGATTACTGTAATTCCATAGCGCTCTTGCCTTACTGATTTTTTTTTCACAATTTTTTCCTTCAATTCCCGCGATGTTTCTCGGTATTAAGACACCTTTTCGCTTTGCATTCAAAAATCTGAATCAACTGCAATTTTAATTTTTCAGGAAGCTCAAATCGTAACTGCATGTGAAGTCGGCAATCGAAGTTCGGGGTAGTCTAGAAGCAGGTAGAGTGAGTTATTTAGTTTCAATACTTGAATTTCGTATTAATTTTCG</canonical_amplicon>
		<polymorphic_amplicon>GCTTCCAGATTTTCTACAGAGATTACTGTAATTCCATAGCGCTCTTGCCTTACTGATTTTTTTTTCACAATTTTTTCCTTCAATTCCCGCGATGTTTCTCGGTATTAAGACACCTTTTCGCTTTGCATTCAAAAATCTGAATCAACTGCAATTTTAATTTTTCAGGAAGCTCAAATCGTAACTGCATGTGAAGTCGGCAATCGAAGTTCGGRGTAGTCTAGAAGCAGGTAGAGTGAGTTATTTAGTTTCAATACTTGAATTTCGTATTAATTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1222</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>561061</contig_pos>
        <strand>+</strand>
        <context>CGCCGTTTTG[C/T]ACCTCTTATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGTTATTTAGTTTCAATACTTGAATTTCGTATTAATTTTCGCCGTTTTG</left_flank>
        <right_flank>ACCTCTTATTAGTTCCATTTACCGTAAACACTGTAATATAAGACCACGAT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAATATGTAAATTGGATAATTGAAAAGAAAGAAATAGGTCTTAAGAGAAAACGGACGAAGATTATAGGGATGTTATTTCCTGAATTTTCCAAAATCTTTTTAAGAACGAAGTTCTGGGAACGGTACTCTGCGAGCAATTATGACCCAGAAAATCTATAGTCAAATATTTTTTGCTTTCAGTATTTATTCTATTTTTCAGATTATTTTTTGTTTCGCTTCCAGATTTTCTACAGAGATTACTGTAATTCCATAGCGCTCTTGCCTTACTGATTTTTTTTTCACAATTTTTTCCTTCAATTCCCGCGATGTTTCTCGGTATTAAGACACCTTTTCGCTTTGCATTCAAAAATCTGAATCAACTGCAATTTTAATTTTTCAGGAAGCTCAAATCGTAACTGCATGTGAAGTCGGCAATCGAAGTTCGGGGTAGTCTAGAAGCAGGTAGAGTGAGTTATTTAGTTTCAATACTTGAATTTCGTATTAATTTTCGCCGTTTTGCACCTCTTATTAGTTCCATTTACCGTAAACACTGTAATATAAGACCACGATATATTACTTGTACTTTGATCTCATATATCCCGGTTCCTGTAACAGGTATCAAAAGTGATCAACCGACAAAATGTTTATCAAAATACCAACAAGATTTTATTAGTTGACACATTTTTCATATCTCTTTTAGAAATTGAGATAATTGAGCTCAAAGTCCAAGTGTAGGGTCGCCTTCTATTAGAGTGTTTACGGTAGTTACAGTGACCAATAATCCTTCTCTTCTGTATATTTACCTCCATGATCGCCTGAATCTCGGAATTTCCATAATTTTTTCAGGTTTTTCAACTGTCCATTGACCGCTCATGATGACATTTTTCAGAGAAAAGGTGGATCCGTTTCCGTTTTGTCTCATTTACCCACACAAAATGTTTATTTCAAACGGAAATGTTTGAAATTTGAGAAGTAGGCGGGGCGAGCTTTCAGTCTCTGCAGGTTATTTCATAACTTTTG</canonical>
            <polymorphic>TAAATATGTAAATTGGATAATTGAAAAGAAAGAAATAGGTCTTAAGAGAAAACGGACGAAGATTATAGGGATGTTATTTCCTGAATTTTCCAAAATCTTTTTAAGAACGAAGTTCTGGGAACGGTACTCTGCGAGCAATTATGACCCAGAAAATCTATAGTCAAATATTTTTTGCTTTCAGTATTTATTCTATTTTTCAGATTATTTTTTGTTTCGCTTCCAGATTTTCTACAGAGATTACTGTAATTCCATAGCGCTCTTGCCTTACTGATTTTTTTTTCACAATTTTTTCCTTCAATTCCCGCGATGTTTCTCGGTATTAAGACACCTTTTCGCTTTGCATTCAAAAATCTGAATCAACTGCAATTTTAATTTTTCAGGAAGCTCAAATCGTAACTGCATGTGAAGTCGGCAATCGAAGTTCGGGGTAGTCTAGAAGCAGGTAGAGTGAGTTATTTAGTTTCAATACTTGAATTTCGTATTAATTTTCGCCGTTTTGYACCTCTTATTAGTTCCATTTACCGTAAACACTGTAATATAAGACCACGATATATTACTTGTACTTTGATCTCATATATCCCGGTTCCTGTAACAGGTATCAAAAGTGATCAACCGACAAAATGTTTATCAAAATACCAACAAGATTTTATTAGTTGACACATTTTTCATATCTCTTTTAGAAATTGAGATAATTGAGCTCAAAGTCCAAGTGTAGGGTCGCCTTCTATTAGAGTGTTTACGGTAGTTACAGTGACCAATAATCCTTCTCTTCTGTATATTTACCTCCATGATCGCCTGAATCTCGGAATTTCCATAATTTTTTCAGGTTTTTCAACTGTCCATTGACCGCTCATGATGACATTTTTCAGAGAAAAGGTGGATCCGTTTCCGTTTTGTCTCATTTACCCACACAAAATGTTTATTTCAAACGGAAATGTTTGAAATTTGAGAAGTAGGCGGGGCGAGCTTTCAGTCTCTGCAGGTTATTTCATAACTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>480 340 100 36 23 21</canonical_bands>
                <polymorphic_bands>580 340 36 23 21</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>282 126 89 78 61 53 52 51 45 45 30 29 23 18 16 2</canonical_bands>
                <polymorphic_bands>282 126 89 80 78 61 53 52 45 45 30 23 18 16 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAGGTAGAGTGAGTTATTTAGTTT</pcr_primer_p1>
		<pcr_primer_p2>AGAAGGATTATTGGTCACTGTAA</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>GCAGGTAGAGTGAGTTATTTAGTTTCAATACTTGAATTTCGTATTAATTTTCGCCGTTTTGCACCTCTTATTAGTTCCATTTACCGTAAACACTGTAATATAAGACCACGATATATTACTTGTACTTTGATCTCATATATCCCGGTTCCTGTAACAGGTATCAAAAGTGATCAACCGACAAAATGTTTATCAAAATACCAACAAGATTTTATTAGTTGACACATTTTTCATATCTCTTTTAGAAATTGAGATAATTGAGCTCAAAGTCCAAGTGTAGGGTCGCCTTCTATTAGAGTGTTTACGGTAGTTACAGTGACCAATAATCCTTCT</canonical_amplicon>
		<polymorphic_amplicon>GCAGGTAGAGTGAGTTATTTAGTTTCAATACTTGAATTTCGTATTAATTTTCGCCGTTTTGYACCTCTTATTAGTTCCATTTACCGTAAACACTGTAATATAAGACCACGATATATTACTTGTACTTTGATCTCATATATCCCGGTTCCTGTAACAGGTATCAAAAGTGATCAACCGACAAAATGTTTATCAAAATACCAACAAGATTTTATTAGTTGACACATTTTTCATATCTCTTTTAGAAATTGAGATAATTGAGCTCAAAGTCCAAGTGTAGGGTCGCCTTCTATTAGAGTGTTTACGGTAGTTACAGTGACCAATAATCCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1223</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>564891</contig_pos>
        <strand>+</strand>
        <context>TGTCCCATCA[A/G]AGCAGTGATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCGTTATCATCGGTTTCCATCGCATCTCCCAGAAGATTTTGTCCCATCA</left_flank>
        <right_flank>AGCAGTGATATCACTCTCTGCTCTGGCAACCTCCTCAGCTCGAATTCTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGACATGTTAACATTTTCGTAGAATGATATATAGGTCCAAGTGCCCAGATCCCTCCTTTAATGTGATTACAACTTTTATTATCTTTAAGTACCATATTTTTCTGTTACATTATATCATTCCTCCCTCCGTTTCGCTTTTCGGGTTATTACAAAGAACAAAATAATATAATAAATTTAAATTATAAGTGTTTATTGGTTAGGGATTCATATAAGGTTATGGAAAATGATGGTGAATTGTTTCAGGAAAAATTATCGAGATCCGATTCCAGGTGACCAGTATTAGGTAATTTACATAATTGATTAATCTGGGTAAAAAAGTAAATCTCAAGAAGAGAATGACAAGGTGCTTGGGAAGTGACGGCGAAAAGGAAAACAATTTCAGCATCGTTTTTTCGTTTCTGGCTCTCCTTCATTATCTAATCCAGCTCTTTTTCTCTTGTCTGATCCATCGTTATCATCGGTTTCCATCGCATCTCCCAGAAGATTTTGTCCCATCAAAGCAGTGATATCACTCTCTGCTCTGGCAACCTCCTCAGCTCGAATTCTTTTCATGTTCTTCATAACTGAGTAGAATTCGGTTTTGAGTTGATGCAAATAATCCGGGTCTTGTACCAAGCCTTCGGTCGAGAAATGACACTGATGTGGTGGAGGATCGTGTGCGCCGATCGGGAAACTCTCGTTTTGTTGAATTCCTTCTAACGATTCTGGCATTTTCGGAAGCACACACTGCACTGTGCAGTTCGCAAGTCTCATTCCTCGAATAGGCATTTGCTCACGATTAACGTAGAAAATGCAAACGAAGAAGAAGACGTGTGTTGGGCGGAAATTGTACTCTGGAGATCCGACTTCGAACGGAATGAATTTGCCGAGTTTCTCCTCATCTCCACTTCTAAATGGTACCGAGACTTCTGATCGGACAGTTGCTCCTCTGGTGTTTCCGATTTCTACGATGAATCGAGCAAGACCATAATCTCCTTTTGGACAGGCGACAAGCCCAC</canonical>
            <polymorphic>CTAGACATGTTAACATTTTCGTAGAATGATATATAGGTCCAAGTGCCCAGATCCCTCCTTTAATGTGATTACAACTTTTATTATCTTTAAGTACCATATTTTTCTGTTACATTATATCATTCCTCCCTCCGTTTCGCTTTTCGGGTTATTACAAAGAACAAAATAATATAATAAATTTAAATTATAAGTGTTTATTGGTTAGGGATTCATATAAGGTTATGGAAAATGATGGTGAATTGTTTCAGGAAAAATTATCGAGATCCGATTCCAGGTGACCAGTATTAGGTAATTTACATAATTGATTAATCTGGGTAAAAAAGTAAATCTCAAGAAGAGAATGACAAGGTGCTTGGGAAGTGACGGCGAAAAGGAAAACAATTTCAGCATCGTTTTTTCGTTTCTGGCTCTCCTTCATTATCTAATCCAGCTCTTTTTCTCTTGTCTGATCCATCGTTATCATCGGTTTCCATCGCATCTCCCAGAAGATTTTGTCCCATCARAGCAGTGATATCACTCTCTGCTCTGGCAACCTCCTCAGCTCGAATTCTTTTCATGTTCTTCATAACTGAGTAGAATTCGGTTTTGAGTTGATGCAAATAATCCGGGTCTTGTACCAAGCCTTCGGTCGAGAAATGACACTGATGTGGTGGAGGATCGTGTGCGCCGATCGGGAAACTCTCGTTTTGTTGAATTCCTTCTAACGATTCTGGCATTTTCGGAAGCACACACTGCACTGTGCAGTTCGCAAGTCTCATTCCTCGAATAGGCATTTGCTCACGATTAACGTAGAAAATGCAAACGAAGAAGAAGACGTGTGTTGGGCGGAAATTGTACTCTGGAGATCCGACTTCGAACGGAATGAATTTGCCGAGTTTCTCCTCATCTCCACTTCTAAATGGTACCGAGACTTCTGATCGGACAGTTGCTCCTCTGGTGTTTCCGATTTCTACGATGAATCGAGCAAGACCATAATCTCCTTTTGGACAGGCGACAAGCCCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCTCAAGAAGAGAATGACAA</pcr_primer_p1>
		<pcr_primer_p2>ACTCAGTTATGAAGAACATGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATCTCAAGAAGAGAATGACAAGGTGCTTGGGAAGTGACGGCGAAAAGGAAAACAATTTCAGCATCGTTTTTTCGTTTCTGGCTCTCCTTCATTATCTAATCCAGCTCTTTTTCTCTTGTCTGATCCATCGTTATCATCGGTTTCCATCGCATCTCCCAGAAGATTTTGTCCCATCAAAGCAGTGATATCACTCTCTGCTCTGGCAACCTCCTCAGCTCGAATTCTTTTCATGTTCTTCATAACTGAGT</canonical_amplicon>
		<polymorphic_amplicon>AAATCTCAAGAAGAGAATGACAAGGTGCTTGGGAAGTGACGGCGAAAAGGAAAACAATTTCAGCATCGTTTTTTCGTTTCTGGCTCTCCTTCATTATCTAATCCAGCTCTTTTTCTCTTGTCTGATCCATCGTTATCATCGGTTTCCATCGCATCTCCCAGAAGATTTTGTCCCATCARAGCAGTGATATCACTCTCTGCTCTGGCAACCTCCTCAGCTCGAATTCTTTTCATGTTCTTCATAACTGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1224</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>571884</contig_pos>
        <strand>+</strand>
        <context>AAAGGATTAT[C/T]GTTCACCGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCAGGAATAAAAAAACCGCCTCCAGACATTCGAGTACTAAAAGGATTAT</left_flank>
        <right_flank>GTTCACCGAAAAGATGAGTCAGTTGACGGTTGAGTTTTCCGAGAGAAAGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGAGCCCTCGGACATACTAATTGTTCAGGCGGACGGAAAGAGTTACTCGACAGTTCAAGAGGAGGAAAATGGGAAGATTGAATGTCTGTGTGTGAACAAGCGAGACATTTTGAAAACCTATTTGAACAGTTGTTGGAAAAAGACAGAGGAGTAATATAAAATAGGTCAAAGGAATGGGGGATTACATTCAGCCGGGCCTTTTGATGTATTTATGAACAATGCAGGTGCATTGTAATGGTTTCTCTTTTTTGAACAGTAGTAAAAATAAAACAATGGTGTCGGATAAGTGTAAAAGAGATCTATCAGAATTTTATGTTTCGGTGGTTCTACATATGGGATTTAATTTTAAAACTTATTGATCCCAACATCATCAATGCTGTCAACAAAATTCGCCGGCGTCTTTCTATCATTGGATTTACGGCATCTAGTTTTTTGAAAACCATTGTAATCAGGAATAAAAAAACCGCCTCCAGACATTCGAGTACTAAAAGGATTATTGTTCACCGAAAAGATGAGTCAGTTGACGGTTGAGTTTTCCGAGAGAAAGGTCCACATTGAAAATATGATAATTTATGGGATTTTCTTAAAAATAAACTAGAAATCAAGTTTCTAGGTCAATTTTGAACCGATTTATGGTCATTTGAAGTTTGGAAGTACCGAAAACGGAATGCAGTCTCGCTTCTCTGCGTATATCAGCTAAATTCTGGAAAATGTCTTTACCTTCGATGGAAATAATGGTAGAAACTTTGTTCTGGCAAAATGAACTTTCTGAAACTGGGAGTTTGAGAAACTTTAAAAAATTCGACTTATTTGGAAGATTCTGCACCTATAGATTCTGCACCCATACACCTGACCATAAAATAAACTTTTTGAAACAATAAACCAATTAAAGAACAACTCAAAAAACTTGATTTAGAATATTGCATAAAATACAGTTACAAATCTTTAGTTTATGAATCTATGTGCTTTCATACTATTAGTTAACAGTACACGTCCTT</canonical>
            <polymorphic>TCAGAGCCCTCGGACATACTAATTGTTCAGGCGGACGGAAAGAGTTACTCGACAGTTCAAGAGGAGGAAAATGGGAAGATTGAATGTCTGTGTGTGAACAAGCGAGACATTTTGAAAACCTATTTGAACAGTTGTTGGAAAAAGACAGAGGAGTAATATAAAATAGGTCAAAGGAATGGGGGATTACATTCAGCCGGGCCTTTTGATGTATTTATGAACAATGCAGGTGCATTGTAATGGTTTCTCTTTTTTGAACAGTAGTAAAAATAAAACAATGGTGTCGGATAAGTGTAAAAGAGATCTATCAGAATTTTATGTTTCGGTGGTTCTACATATGGGATTTAATTTTAAAACTTATTGATCCCAACATCATCAATGCTGTCAACAAAATTCGCCGGCGTCTTTCTATCATTGGATTTACGGCATCTAGTTTTTTGAAAACCATTGTAATCAGGAATAAAAAAACCGCCTCCAGACATTCGAGTACTAAAAGGATTATYGTTCACCGAAAAGATGAGTCAGTTGACGGTTGAGTTTTCCGAGAGAAAGGTCCACATTGAAAATATGATAATTTATGGGATTTTCTTAAAAATAAACTAGAAATCAAGTTTCTAGGTCAATTTTGAACCGATTTATGGTCATTTGAAGTTTGGAAGTACCGAAAACGGAATGCAGTCTCGCTTCTCTGCGTATATCAGCTAAATTCTGGAAAATGTCTTTACCTTCGATGGAAATAATGGTAGAAACTTTGTTCTGGCAAAATGAACTTTCTGAAACTGGGAGTTTGAGAAACTTTAAAAAATTCGACTTATTTGGAAGATTCTGCACCTATAGATTCTGCACCCATACACCTGACCATAAAATAAACTTTTTGAAACAATAAACCAATTAAAGAACAACTCAAAAAACTTGATTTAGAATATTGCATAAAATACAGTTACAAATCTTTAGTTTATGAATCTATGTGCTTTCATACTATTAGTTAACAGTACACGTCCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTCTACATATGGGATTTAATTT</pcr_primer_p1>
		<pcr_primer_p2>TATCATATTTTCAATGTGGACCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGTTCTACATATGGGATTTAATTTTAAAACTTATTGATCCCAACATCATCAATGCTGTCAACAAAATTCGCCGGCGTCTTTCTATCATTGGATTTACGGCATCTAGTTTTTTGAAAACCATTGTAATCAGGAATAAAAAAACCGCCTCCAGACATTCGAGTACTAAAAGGATTATTGTTCACCGAAAAGATGAGTCAGTTGACGGTTGAGTTTTCCGAGAGAAAGGTCCACATTGAAAATATGATA</canonical_amplicon>
		<polymorphic_amplicon>GGTTCTACATATGGGATTTAATTTTAAAACTTATTGATCCCAACATCATCAATGCTGTCAACAAAATTCGCCGGCGTCTTTCTATCATTGGATTTACGGCATCTAGTTTTTTGAAAACCATTGTAATCAGGAATAAAAAAACCGCCTCCAGACATTCGAGTACTAAAAGGATTATYGTTCACCGAAAAGATGAGTCAGTTGACGGTTGAGTTTTCCGAGAGAAAGGTCCACATTGAAAATATGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1225</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>572173</contig_pos>
        <strand>+</strand>
        <context>GGGAGTTTGA[A/G]AAACTTTAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTAGAAACTTTGTTCTGGCAAAATGAACTTTCTGAAACTGGGAGTTTGA</left_flank>
        <right_flank>AAACTTTAAAAAATTCGACTTATTTGGAAGATTCTGCACCTATAGATTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTAAAAGAGATCTATCAGAATTTTATGTTTCGGTGGTTCTACATATGGGATTTAATTTTAAAACTTATTGATCCCAACATCATCAATGCTGTCAACAAAATTCGCCGGCGTCTTTCTATCATTGGATTTACGGCATCTAGTTTTTTGAAAACCATTGTAATCAGGAATAAAAAAACCGCCTCCAGACATTCGAGTACTAAAAGGATTATTGTTCACCGAAAAGATGAGTCAGTTGACGGTTGAGTTTTCCGAGAGAAAGGTCCACATTGAAAATATGATAATTTATGGGATTTTCTTAAAAATAAACTAGAAATCAAGTTTCTAGGTCAATTTTGAACCGATTTATGGTCATTTGAAGTTTGGAAGTACCGAAAACGGAATGCAGTCTCGCTTCTCTGCGTATATCAGCTAAATTCTGGAAAATGTCTTTACCTTCGATGGAAATAATGGTAGAAACTTTGTTCTGGCAAAATGAACTTTCTGAAACTGGGAGTTTGAGAAACTTTAAAAAATTCGACTTATTTGGAAGATTCTGCACCTATAGATTCTGCACCCATACACCTGACCATAAAATAAACTTTTTGAAACAATAAACCAATTAAAGAACAACTCAAAAAACTTGATTTAGAATATTGCATAAAATACAGTTACAAATCTTTAGTTTATGAATCTATGTGCTTTCATACTATTAGTTAACAGTACACGTCCTTCATCGAACGGTTCTAACCAAAAAACCATAACACTTCGCTTCAAATTTTCGAGTCGTTTTAATTTAAGTCAGAAAAAATGTATTCTATGGTGAAAAAATTTTGAAAATACATAAATTAGGGAGATGAAAGACATAGTAATTATAGACTGCTTTTACTATACAAGTGGATGGCCGGGCTGAGCCGGGCCGGGCCGGCCCGCTTTTCTCAAAACCCTCGGCCCGGCCTGCCTAGAACAACTTTTCGGAAAATTTTATTTTTTCAATGTGCCAAAATATTTTTAATAGCACAA</canonical>
            <polymorphic>TGTAAAAGAGATCTATCAGAATTTTATGTTTCGGTGGTTCTACATATGGGATTTAATTTTAAAACTTATTGATCCCAACATCATCAATGCTGTCAACAAAATTCGCCGGCGTCTTTCTATCATTGGATTTACGGCATCTAGTTTTTTGAAAACCATTGTAATCAGGAATAAAAAAACCGCCTCCAGACATTCGAGTACTAAAAGGATTATTGTTCACCGAAAAGATGAGTCAGTTGACGGTTGAGTTTTCCGAGAGAAAGGTCCACATTGAAAATATGATAATTTATGGGATTTTCTTAAAAATAAACTAGAAATCAAGTTTCTAGGTCAATTTTGAACCGATTTATGGTCATTTGAAGTTTGGAAGTACCGAAAACGGAATGCAGTCTCGCTTCTCTGCGTATATCAGCTAAATTCTGGAAAATGTCTTTACCTTCGATGGAAATAATGGTAGAAACTTTGTTCTGGCAAAATGAACTTTCTGAAACTGGGAGTTTGARAAACTTTAAAAAATTCGACTTATTTGGAAGATTCTGCACCTATAGATTCTGCACCCATACACCTGACCATAAAATAAACTTTTTGAAACAATAAACCAATTAAAGAACAACTCAAAAAACTTGATTTAGAATATTGCATAAAATACAGTTACAAATCTTTAGTTTATGAATCTATGTGCTTTCATACTATTAGTTAACAGTACACGTCCTTCATCGAACGGTTCTAACCAAAAAACCATAACACTTCGCTTCAAATTTTCGAGTCGTTTTAATTTAAGTCAGAAAAAATGTATTCTATGGTGAAAAAATTTTGAAAATACATAAATTAGGGAGATGAAAGACATAGTAATTATAGACTGCTTTTACTATACAAGTGGATGGCCGGGCTGAGCCGGGCCGGGCCGGCCCGCTTTTCTCAAAACCCTCGGCCCGGCCTGCCTAGAACAACTTTTCGGAAAATTTTATTTTTTCAATGTGCCAAAATATTTTTAATAGCACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCCACATTGAAAATATGATAA</pcr_primer_p1>
		<pcr_primer_p2>GCAGAATCTATAGGTGCAGAA</pcr_primer_p2>
		<pcr_amplicon_size>293</pcr_amplicon_size>
		<canonical_amplicon>GGTCCACATTGAAAATATGATAATTTATGGGATTTTCTTAAAAATAAACTAGAAATCAAGTTTCTAGGTCAATTTTGAACCGATTTATGGTCATTTGAAGTTTGGAAGTACCGAAAACGGAATGCAGTCTCGCTTCTCTGCGTATATCAGCTAAATTCTGGAAAATGTCTTTACCTTCGATGGAAATAATGGTAGAAACTTTGTTCTGGCAAAATGAACTTTCTGAAACTGGGAGTTTGAGAAACTTTAAAAAATTCGACTTATTTGGAAGATTCTGCACCTATAGATTCTGC</canonical_amplicon>
		<polymorphic_amplicon>GGTCCACATTGAAAATATGATAATTTATGGGATTTTCTTAAAAATAAACTAGAAATCAAGTTTCTAGGTCAATTTTGAACCGATTTATGGTCATTTGAAGTTTGGAAGTACCGAAAACGGAATGCAGTCTCGCTTCTCTGCGTATATCAGCTAAATTCTGGAAAATGTCTTTACCTTCGATGGAAATAATGGTAGAAACTTTGTTCTGGCAAAATGAACTTTCTGAAACTGGGAGTTTGARAAACTTTAAAAAATTCGACTTATTTGGAAGATTCTGCACCTATAGATTCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1226</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>572357</contig_pos>
        <strand>+</strand>
        <context>ATGTGCTTTC[A/C]TACTATTAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGCATAAAATACAGTTACAAATCTTTAGTTTATGAATCTATGTGCTTTC</left_flank>
        <right_flank>TACTATTAGTTAACAGTACACGTCCTTCATCGAACGGTTCTAACCAAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACATTCGAGTACTAAAAGGATTATTGTTCACCGAAAAGATGAGTCAGTTGACGGTTGAGTTTTCCGAGAGAAAGGTCCACATTGAAAATATGATAATTTATGGGATTTTCTTAAAAATAAACTAGAAATCAAGTTTCTAGGTCAATTTTGAACCGATTTATGGTCATTTGAAGTTTGGAAGTACCGAAAACGGAATGCAGTCTCGCTTCTCTGCGTATATCAGCTAAATTCTGGAAAATGTCTTTACCTTCGATGGAAATAATGGTAGAAACTTTGTTCTGGCAAAATGAACTTTCTGAAACTGGGAGTTTGAGAAACTTTAAAAAATTCGACTTATTTGGAAGATTCTGCACCTATAGATTCTGCACCCATACACCTGACCATAAAATAAACTTTTTGAAACAATAAACCAATTAAAGAACAACTCAAAAAACTTGATTTAGAATATTGCATAAAATACAGTTACAAATCTTTAGTTTATGAATCTATGTGCTTTCATACTATTAGTTAACAGTACACGTCCTTCATCGAACGGTTCTAACCAAAAAACCATAACACTTCGCTTCAAATTTTCGAGTCGTTTTAATTTAAGTCAGAAAAAATGTATTCTATGGTGAAAAAATTTTGAAAATACATAAATTAGGGAGATGAAAGACATAGTAATTATAGACTGCTTTTACTATACAAGTGGATGGCCGGGCTGAGCCGGGCCGGGCCGGCCCGCTTTTCTCAAAACCCTCGGCCCGGCCTGCCTAGAACAACTTTTCGGAAAATTTTATTTTTTCAATGTGCCAAAATATTTTTAATAGCACAAATATTAATTCAGATGTATACAACATCCTAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAAAAATCAAACTTCATTAAGCCAAGGATGGAACTTTTTTTCTAATTACGACCTCAAAACAGTTTTTTTCGACAGATTCGGTCTCTAGTGTGGATTTTCATTTATTAAGAAGAAAAGCCATCTT</canonical>
            <polymorphic>AGACATTCGAGTACTAAAAGGATTATTGTTCACCGAAAAGATGAGTCAGTTGACGGTTGAGTTTTCCGAGAGAAAGGTCCACATTGAAAATATGATAATTTATGGGATTTTCTTAAAAATAAACTAGAAATCAAGTTTCTAGGTCAATTTTGAACCGATTTATGGTCATTTGAAGTTTGGAAGTACCGAAAACGGAATGCAGTCTCGCTTCTCTGCGTATATCAGCTAAATTCTGGAAAATGTCTTTACCTTCGATGGAAATAATGGTAGAAACTTTGTTCTGGCAAAATGAACTTTCTGAAACTGGGAGTTTGAGAAACTTTAAAAAATTCGACTTATTTGGAAGATTCTGCACCTATAGATTCTGCACCCATACACCTGACCATAAAATAAACTTTTTGAAACAATAAACCAATTAAAGAACAACTCAAAAAACTTGATTTAGAATATTGCATAAAATACAGTTACAAATCTTTAGTTTATGAATCTATGTGCTTTCMTACTATTAGTTAACAGTACACGTCCTTCATCGAACGGTTCTAACCAAAAAACCATAACACTTCGCTTCAAATTTTCGAGTCGTTTTAATTTAAGTCAGAAAAAATGTATTCTATGGTGAAAAAATTTTGAAAATACATAAATTAGGGAGATGAAAGACATAGTAATTATAGACTGCTTTTACTATACAAGTGGATGGCCGGGCTGAGCCGGGCCGGGCCGGCCCGCTTTTCTCAAAACCCTCGGCCCGGCCTGCCTAGAACAACTTTTCGGAAAATTTTATTTTTTCAATGTGCCAAAATATTTTTAATAGCACAAATATTAATTCAGATGTATACAACATCCTAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAAAAATCAAACTTCATTAAGCCAAGGATGGAACTTTTTTTCTAATTACGACCTCAAAACAGTTTTTTTCGACAGATTCGGTCTCTAGTGTGGATTTTCATTTATTAAGAAGAAAAGCCATCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTCGACTTATTTGGAAGAT</pcr_primer_p1>
		<pcr_primer_p2>AAAATTTGAAGCGAAGTGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATTCGACTTATTTGGAAGATTCTGCACCTATAGATTCTGCACCCATACACCTGACCATAAAATAAACTTTTTGAAACAATAAACCAATTAAAGAACAACTCAAAAAACTTGATTTAGAATATTGCATAAAATACAGTTACAAATCTTTAGTTTATGAATCTATGTGCTTTCATACTATTAGTTAACAGTACACGTCCTTCATCGAACGGTTCTAACCAAAAAACCATAACACTTCGCTTCAAATTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAATTCGACTTATTTGGAAGATTCTGCACCTATAGATTCTGCACCCATACACCTGACCATAAAATAAACTTTTTGAAACAATAAACCAATTAAAGAACAACTCAAAAAACTTGATTTAGAATATTGCATAAAATACAGTTACAAATCTTTAGTTTATGAATCTATGTGCTTTCMTACTATTAGTTAACAGTACACGTCCTTCATCGAACGGTTCTAACCAAAAAACCATAACACTTCGCTTCAAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1227</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>574256</contig_pos>
        <strand>+</strand>
        <context>AAGAGAAGAT[A/C]AGAAGAGGTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGCTGGGATAAAAAGTTGAGGCGGGTTGGTCGAAGTTCAGAAGAGAAGAT</left_flank>
        <right_flank>AGAAGAGGTGTTGGAGCAGGAAGTCATTGGAAACCTGAAAAATATACGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTAAATAATTTGGGAACTATGAAGCTGCAAAAGTTCAAAAACTTTTATCGCATTCCTTAACAACTGGAAGTTTACAGCAGAGTCATATATTTTTCATATATTTATTCAGCTGAACACAATATATCAATCAATAGGAAAAACTCTGTAAACACAAAACGAGGAACTTGTCAAAACAACTTTTGCAAGTGGAATCAAAAGAACATGAATATTTGAATGTCTATAGTTTGCTTCTTTTATAGAGCATGAGGTGGAATCATGATAATTTGGGACCAGAGCATTGTTAGGGATTTAGAAATTCTATCCATGAAAACGCGAAGGTTAGCTGCTTATTATTAGAATAATGGGTTGAATTTCAGTCATGTAAAATTGCGAGGATTGAAATATACGGTGCATGAAAAGAAAGGGAACAGTGAGCGAGATTGTTAGCTGGGGATAATTTTTAGGAGAAAGCTGGGATAAAAAGTTGAGGCGGGTTGGTCGAAGTTCAGAAGAGAAGATCAGAAGAGGTGTTGGAGCAGGAAGTCATTGGAAACCTGAAAAATATACGATCGGAGTTATAGGGGCTAGTTATAGGGGCTAGTGGGCTAGCTATCTGGTACAAAAATCGCAGCTGTGGAAAAGTTGGCGCTGGCCGAAAATCCCACAACGACACCTAACGCAACGTAAAATGTTATTTTCCGTATCCAATGACTTGTAGAGTTTTCGGTTTTTTTTTCTCAACAAAAGCGCGAAAATAAAAATTTTTGATGATGAAAAATTGATTGAAAACACCCGAAAATCAAGAAAGTAAATCCGGAAAATGAAAAAATTTTAGGTTACTGTAGTTGTCGTTGTGAGGCCTTCGGCCACGGACGTTTGTCTTCCACTGCTCTTTTTTGTGTCAGAATAATATTGTTTCGAAAATTTTAGAAACAATTTTAAACGTACAAAGATGTATAGAAGAATAAATAATTTCTCAATACTTTCCTGGATCTTAATACAAATTTATGAAACAGGGAT</canonical>
            <polymorphic>GTTAAATAATTTGGGAACTATGAAGCTGCAAAAGTTCAAAAACTTTTATCGCATTCCTTAACAACTGGAAGTTTACAGCAGAGTCATATATTTTTCATATATTTATTCAGCTGAACACAATATATCAATCAATAGGAAAAACTCTGTAAACACAAAACGAGGAACTTGTCAAAACAACTTTTGCAAGTGGAATCAAAAGAACATGAATATTTGAATGTCTATAGTTTGCTTCTTTTATAGAGCATGAGGTGGAATCATGATAATTTGGGACCAGAGCATTGTTAGGGATTTAGAAATTCTATCCATGAAAACGCGAAGGTTAGCTGCTTATTATTAGAATAATGGGTTGAATTTCAGTCATGTAAAATTGCGAGGATTGAAATATACGGTGCATGAAAAGAAAGGGAACAGTGAGCGAGATTGTTAGCTGGGGATAATTTTTAGGAGAAAGCTGGGATAAAAAGTTGAGGCGGGTTGGTCGAAGTTCAGAAGAGAAGATMAGAAGAGGTGTTGGAGCAGGAAGTCATTGGAAACCTGAAAAATATACGATCGGAGTTATAGGGGCTAGTTATAGGGGCTAGTGGGCTAGCTATCTGGTACAAAAATCGCAGCTGTGGAAAAGTTGGCGCTGGCCGAAAATCCCACAACGACACCTAACGCAACGTAAAATGTTATTTTCCGTATCCAATGACTTGTAGAGTTTTCGGTTTTTTTTTCTCAACAAAAGCGCGAAAATAAAAATTTTTGATGATGAAAAATTGATTGAAAACACCCGAAAATCAAGAAAGTAAATCCGGAAAATGAAAAAATTTTAGGTTACTGTAGTTGTCGTTGTGAGGCCTTCGGCCACGGACGTTTGTCTTCCACTGCTCTTTTTTGTGTCAGAATAATATTGTTTCGAAAATTTTAGAAACAATTTTAAACGTACAAAGATGTATAGAAGAATAAATAATTTCTCAATACTTTCCTGGATCTTAATACAAATTTATGAAACAGGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>496 423 51 30</canonical_bands>
                <polymorphic_bands>547 423 30</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>488 332 116 51 13</canonical_bands>
                <polymorphic_bands>488 332 116 64</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAAGGTTAGCTGCTTATTATT</pcr_primer_p1>
		<pcr_primer_p2>TAACTCCGATCGTATATTTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CGAAGGTTAGCTGCTTATTATTAGAATAATGGGTTGAATTTCAGTCATGTAAAATTGCGAGGATTGAAATATACGGTGCATGAAAAGAAAGGGAACAGTGAGCGAGATTGTTAGCTGGGGATAATTTTTAGGAGAAAGCTGGGATAAAAAGTTGAGGCGGGTTGGTCGAAGTTCAGAAGAGAAGATCAGAAGAGGTGTTGGAGCAGGAAGTCATTGGAAACCTGAAAAATATACGATCGGAGTTA</canonical_amplicon>
		<polymorphic_amplicon>CGAAGGTTAGCTGCTTATTATTAGAATAATGGGTTGAATTTCAGTCATGTAAAATTGCGAGGATTGAAATATACGGTGCATGAAAAGAAAGGGAACAGTGAGCGAGATTGTTAGCTGGGGATAATTTTTAGGAGAAAGCTGGGATAAAAAGTTGAGGCGGGTTGGTCGAAGTTCAGAAGAGAAGATMAGAAGAGGTGTTGGAGCAGGAAGTCATTGGAAACCTGAAAAATATACGATCGGAGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1228</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>574241</contig_pos>
        <strand>+</strand>
        <context>TTGGTCGAAG[A/T]TCAGAAGAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAATTTTTAGGAGAAAGCTGGGATAAAAAGTTGAGGCGGGTTGGTCGAAG</left_flank>
        <right_flank>TCAGAAGAGAAGATCAGAAGAGGTGTTGGAGCAGGAAGTCATTGGAAACC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCCCACATGAATTCGTTAAATAATTTGGGAACTATGAAGCTGCAAAAGTTCAAAAACTTTTATCGCATTCCTTAACAACTGGAAGTTTACAGCAGAGTCATATATTTTTCATATATTTATTCAGCTGAACACAATATATCAATCAATAGGAAAAACTCTGTAAACACAAAACGAGGAACTTGTCAAAACAACTTTTGCAAGTGGAATCAAAAGAACATGAATATTTGAATGTCTATAGTTTGCTTCTTTTATAGAGCATGAGGTGGAATCATGATAATTTGGGACCAGAGCATTGTTAGGGATTTAGAAATTCTATCCATGAAAACGCGAAGGTTAGCTGCTTATTATTAGAATAATGGGTTGAATTTCAGTCATGTAAAATTGCGAGGATTGAAATATACGGTGCATGAAAAGAAAGGGAACAGTGAGCGAGATTGTTAGCTGGGGATAATTTTTAGGAGAAAGCTGGGATAAAAAGTTGAGGCGGGTTGGTCGAAGTTCAGAAGAGAAGATCAGAAGAGGTGTTGGAGCAGGAAGTCATTGGAAACCTGAAAAATATACGATCGGAGTTATAGGGGCTAGTTATAGGGGCTAGTGGGCTAGCTATCTGGTACAAAAATCGCAGCTGTGGAAAAGTTGGCGCTGGCCGAAAATCCCACAACGACACCTAACGCAACGTAAAATGTTATTTTCCGTATCCAATGACTTGTAGAGTTTTCGGTTTTTTTTTCTCAACAAAAGCGCGAAAATAAAAATTTTTGATGATGAAAAATTGATTGAAAACACCCGAAAATCAAGAAAGTAAATCCGGAAAATGAAAAAATTTTAGGTTACTGTAGTTGTCGTTGTGAGGCCTTCGGCCACGGACGTTTGTCTTCCACTGCTCTTTTTTGTGTCAGAATAATATTGTTTCGAAAATTTTAGAAACAATTTTAAACGTACAAAGATGTATAGAAGAATAAATAATTTCTCAATACTTTCCTGGATCTTAATACAAAT</canonical>
            <polymorphic>CGCCCACATGAATTCGTTAAATAATTTGGGAACTATGAAGCTGCAAAAGTTCAAAAACTTTTATCGCATTCCTTAACAACTGGAAGTTTACAGCAGAGTCATATATTTTTCATATATTTATTCAGCTGAACACAATATATCAATCAATAGGAAAAACTCTGTAAACACAAAACGAGGAACTTGTCAAAACAACTTTTGCAAGTGGAATCAAAAGAACATGAATATTTGAATGTCTATAGTTTGCTTCTTTTATAGAGCATGAGGTGGAATCATGATAATTTGGGACCAGAGCATTGTTAGGGATTTAGAAATTCTATCCATGAAAACGCGAAGGTTAGCTGCTTATTATTAGAATAATGGGTTGAATTTCAGTCATGTAAAATTGCGAGGATTGAAATATACGGTGCATGAAAAGAAAGGGAACAGTGAGCGAGATTGTTAGCTGGGGATAATTTTTAGGAGAAAGCTGGGATAAAAAGTTGAGGCGGGTTGGTCGAAGWTCAGAAGAGAAGATCAGAAGAGGTGTTGGAGCAGGAAGTCATTGGAAACCTGAAAAATATACGATCGGAGTTATAGGGGCTAGTTATAGGGGCTAGTGGGCTAGCTATCTGGTACAAAAATCGCAGCTGTGGAAAAGTTGGCGCTGGCCGAAAATCCCACAACGACACCTAACGCAACGTAAAATGTTATTTTCCGTATCCAATGACTTGTAGAGTTTTCGGTTTTTTTTTCTCAACAAAAGCGCGAAAATAAAAATTTTTGATGATGAAAAATTGATTGAAAACACCCGAAAATCAAGAAAGTAAATCCGGAAAATGAAAAAATTTTAGGTTACTGTAGTTGTCGTTGTGAGGCCTTCGGCCACGGACGTTTGTCTTCCACTGCTCTTTTTTGTGTCAGAATAATATTGTTTCGAAAATTTTAGAAACAATTTTAAACGTACAAAGATGTATAGAAGAATAAATAATTTCTCAATACTTTCCTGGATCTTAATACAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAAGGTTAGCTGCTTATTATT</pcr_primer_p1>
		<pcr_primer_p2>TAACTCCGATCGTATATTTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CGAAGGTTAGCTGCTTATTATTAGAATAATGGGTTGAATTTCAGTCATGTAAAATTGCGAGGATTGAAATATACGGTGCATGAAAAGAAAGGGAACAGTGAGCGAGATTGTTAGCTGGGGATAATTTTTAGGAGAAAGCTGGGATAAAAAGTTGAGGCGGGTTGGTCGAAGTTCAGAAGAGAAGATCAGAAGAGGTGTTGGAGCAGGAAGTCATTGGAAACCTGAAAAATATACGATCGGAGTTA</canonical_amplicon>
		<polymorphic_amplicon>CGAAGGTTAGCTGCTTATTATTAGAATAATGGGTTGAATTTCAGTCATGTAAAATTGCGAGGATTGAAATATACGGTGCATGAAAAGAAAGGGAACAGTGAGCGAGATTGTTAGCTGGGGATAATTTTTAGGAGAAAGCTGGGATAAAAAGTTGAGGCGGGTTGGTCGAAGWTCAGAAGAGAAGATCAGAAGAGGTGTTGGAGCAGGAAGTCATTGGAAACCTGAAAAATATACGATCGGAGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1229</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>573967</contig_pos>
        <strand>+</strand>
        <context>ACATGAATAT[C/T]TGAATGTCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAACTTGTCAAAACAACTTTTGCAAGTGGAATCAAAAGAACATGAATAT</left_flank>
        <right_flank>TGAATGTCTATAGTTTGCTTCTTTTATAGAGCATGAGGTGGAATCATGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCCGATTATTTTCGTATAGCCAATTTTCAAATTATTTGATAAACCTTGAGCTGAGTTATCGCTTTCCAAAGTTACTTCATCTTATGAAAATCACAACAGCGTTCAAGAAGCATTCATCTTTGAACAATAACAAAAACACCAAGACTTGAGGGATCATTTTGAAAATTTTAGTACCTTTGAATCAGACGTGAAATTATACTTCTACCTATTTTCAAGATTCCAAGATATTTATGCCGAAAGATATGCCCGTTTTTATTACTCCTGGTGATTGTGCGCCCACATGAATTCGTTAAATAATTTGGGAACTATGAAGCTGCAAAAGTTCAAAAACTTTTATCGCATTCCTTAACAACTGGAAGTTTACAGCAGAGTCATATATTTTTCATATATTTATTCAGCTGAACACAATATATCAATCAATAGGAAAAACTCTGTAAACACAAAACGAGGAACTTGTCAAAACAACTTTTGCAAGTGGAATCAAAAGAACATGAATATTTGAATGTCTATAGTTTGCTTCTTTTATAGAGCATGAGGTGGAATCATGATAATTTGGGACCAGAGCATTGTTAGGGATTTAGAAATTCTATCCATGAAAACGCGAAGGTTAGCTGCTTATTATTAGAATAATGGGTTGAATTTCAGTCATGTAAAATTGCGAGGATTGAAATATACGGTGCATGAAAAGAAAGGGAACAGTGAGCGAGATTGTTAGCTGGGGATAATTTTTAGGAGAAAGCTGGGATAAAAAGTTGAGGCGGGTTGGTCGAAGTTCAGAAGAGAAGATCAGAAGAGGTGTTGGAGCAGGAAGTCATTGGAAACCTGAAAAATATACGATCGGAGTTATAGGGGCTAGTTATAGGGGCTAGTGGGCTAGCTATCTGGTACAAAAATCGCAGCTGTGGAAAAGTTGGCGCTGGCCGAAAATCCCACAACGACACCTAACGCAACGTAAAATGTTATTTTCCGTATCCAATGACTTGTAGAGTTTTCGGTTTT</canonical>
            <polymorphic>GGCCGATTATTTTCGTATAGCCAATTTTCAAATTATTTGATAAACCTTGAGCTGAGTTATCGCTTTCCAAAGTTACTTCATCTTATGAAAATCACAACAGCGTTCAAGAAGCATTCATCTTTGAACAATAACAAAAACACCAAGACTTGAGGGATCATTTTGAAAATTTTAGTACCTTTGAATCAGACGTGAAATTATACTTCTACCTATTTTCAAGATTCCAAGATATTTATGCCGAAAGATATGCCCGTTTTTATTACTCCTGGTGATTGTGCGCCCACATGAATTCGTTAAATAATTTGGGAACTATGAAGCTGCAAAAGTTCAAAAACTTTTATCGCATTCCTTAACAACTGGAAGTTTACAGCAGAGTCATATATTTTTCATATATTTATTCAGCTGAACACAATATATCAATCAATAGGAAAAACTCTGTAAACACAAAACGAGGAACTTGTCAAAACAACTTTTGCAAGTGGAATCAAAAGAACATGAATATYTGAATGTCTATAGTTTGCTTCTTTTATAGAGCATGAGGTGGAATCATGATAATTTGGGACCAGAGCATTGTTAGGGATTTAGAAATTCTATCCATGAAAACGCGAAGGTTAGCTGCTTATTATTAGAATAATGGGTTGAATTTCAGTCATGTAAAATTGCGAGGATTGAAATATACGGTGCATGAAAAGAAAGGGAACAGTGAGCGAGATTGTTAGCTGGGGATAATTTTTAGGAGAAAGCTGGGATAAAAAGTTGAGGCGGGTTGGTCGAAGTTCAGAAGAGAAGATCAGAAGAGGTGTTGGAGCAGGAAGTCATTGGAAACCTGAAAAATATACGATCGGAGTTATAGGGGCTAGTTATAGGGGCTAGTGGGCTAGCTATCTGGTACAAAAATCGCAGCTGTGGAAAAGTTGGCGCTGGCCGAAAATCCCACAACGACACCTAACGCAACGTAAAATGTTATTTTCCGTATCCAATGACTTGTAGAGTTTTCGGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTGAACACAATATATCAATCAA</pcr_primer_p1>
		<pcr_primer_p2>CTGAAATTCAACCCATTATTCTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCTGAACACAATATATCAATCAATAGGAAAAACTCTGTAAACACAAAACGAGGAACTTGTCAAAACAACTTTTGCAAGTGGAATCAAAAGAACATGAATATTTGAATGTCTATAGTTTGCTTCTTTTATAGAGCATGAGGTGGAATCATGATAATTTGGGACCAGAGCATTGTTAGGGATTTAGAAATTCTATCCATGAAAACGCGAAGGTTAGCTGCTTATTATTAGAATAATGGGTTGAATTTCAG</canonical_amplicon>
		<polymorphic_amplicon>GCTGAACACAATATATCAATCAATAGGAAAAACTCTGTAAACACAAAACGAGGAACTTGTCAAAACAACTTTTGCAAGTGGAATCAAAAGAACATGAATATYTGAATGTCTATAGTTTGCTTCTTTTATAGAGCATGAGGTGGAATCATGATAATTTGGGACCAGAGCATTGTTAGGGATTTAGAAATTCTATCCATGAAAACGCGAAGGTTAGCTGCTTATTATTAGAATAATGGGTTGAATTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1230</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>573956</contig_pos>
        <strand>+</strand>
        <context>GAATCAAAAG[A/C]ACATGAATAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACACAAAACGAGGAACTTGTCAAAACAACTTTTGCAAGTGGAATCAAAAG</left_flank>
        <right_flank>ACATGAATATTTGAATGTCTATAGTTTGCTTCTTTTATAGAGCATGAGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATTTACGGGGCCGATTATTTTCGTATAGCCAATTTTCAAATTATTTGATAAACCTTGAGCTGAGTTATCGCTTTCCAAAGTTACTTCATCTTATGAAAATCACAACAGCGTTCAAGAAGCATTCATCTTTGAACAATAACAAAAACACCAAGACTTGAGGGATCATTTTGAAAATTTTAGTACCTTTGAATCAGACGTGAAATTATACTTCTACCTATTTTCAAGATTCCAAGATATTTATGCCGAAAGATATGCCCGTTTTTATTACTCCTGGTGATTGTGCGCCCACATGAATTCGTTAAATAATTTGGGAACTATGAAGCTGCAAAAGTTCAAAAACTTTTATCGCATTCCTTAACAACTGGAAGTTTACAGCAGAGTCATATATTTTTCATATATTTATTCAGCTGAACACAATATATCAATCAATAGGAAAAACTCTGTAAACACAAAACGAGGAACTTGTCAAAACAACTTTTGCAAGTGGAATCAAAAGAACATGAATATTTGAATGTCTATAGTTTGCTTCTTTTATAGAGCATGAGGTGGAATCATGATAATTTGGGACCAGAGCATTGTTAGGGATTTAGAAATTCTATCCATGAAAACGCGAAGGTTAGCTGCTTATTATTAGAATAATGGGTTGAATTTCAGTCATGTAAAATTGCGAGGATTGAAATATACGGTGCATGAAAAGAAAGGGAACAGTGAGCGAGATTGTTAGCTGGGGATAATTTTTAGGAGAAAGCTGGGATAAAAAGTTGAGGCGGGTTGGTCGAAGTTCAGAAGAGAAGATCAGAAGAGGTGTTGGAGCAGGAAGTCATTGGAAACCTGAAAAATATACGATCGGAGTTATAGGGGCTAGTTATAGGGGCTAGTGGGCTAGCTATCTGGTACAAAAATCGCAGCTGTGGAAAAGTTGGCGCTGGCCGAAAATCCCACAACGACACCTAACGCAACGTAAAATGTTATTTTCCGTATCCAATGACTTGTAGAG</canonical>
            <polymorphic>AGAATTTACGGGGCCGATTATTTTCGTATAGCCAATTTTCAAATTATTTGATAAACCTTGAGCTGAGTTATCGCTTTCCAAAGTTACTTCATCTTATGAAAATCACAACAGCGTTCAAGAAGCATTCATCTTTGAACAATAACAAAAACACCAAGACTTGAGGGATCATTTTGAAAATTTTAGTACCTTTGAATCAGACGTGAAATTATACTTCTACCTATTTTCAAGATTCCAAGATATTTATGCCGAAAGATATGCCCGTTTTTATTACTCCTGGTGATTGTGCGCCCACATGAATTCGTTAAATAATTTGGGAACTATGAAGCTGCAAAAGTTCAAAAACTTTTATCGCATTCCTTAACAACTGGAAGTTTACAGCAGAGTCATATATTTTTCATATATTTATTCAGCTGAACACAATATATCAATCAATAGGAAAAACTCTGTAAACACAAAACGAGGAACTTGTCAAAACAACTTTTGCAAGTGGAATCAAAAGMACATGAATATTTGAATGTCTATAGTTTGCTTCTTTTATAGAGCATGAGGTGGAATCATGATAATTTGGGACCAGAGCATTGTTAGGGATTTAGAAATTCTATCCATGAAAACGCGAAGGTTAGCTGCTTATTATTAGAATAATGGGTTGAATTTCAGTCATGTAAAATTGCGAGGATTGAAATATACGGTGCATGAAAAGAAAGGGAACAGTGAGCGAGATTGTTAGCTGGGGATAATTTTTAGGAGAAAGCTGGGATAAAAAGTTGAGGCGGGTTGGTCGAAGTTCAGAAGAGAAGATCAGAAGAGGTGTTGGAGCAGGAAGTCATTGGAAACCTGAAAAATATACGATCGGAGTTATAGGGGCTAGTTATAGGGGCTAGTGGGCTAGCTATCTGGTACAAAAATCGCAGCTGTGGAAAAGTTGGCGCTGGCCGAAAATCCCACAACGACACCTAACGCAACGTAAAATGTTATTTTCCGTATCCAATGACTTGTAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTGAACACAATATATCAATCAA</pcr_primer_p1>
		<pcr_primer_p2>CTGAAATTCAACCCATTATTCTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCTGAACACAATATATCAATCAATAGGAAAAACTCTGTAAACACAAAACGAGGAACTTGTCAAAACAACTTTTGCAAGTGGAATCAAAAGAACATGAATATTTGAATGTCTATAGTTTGCTTCTTTTATAGAGCATGAGGTGGAATCATGATAATTTGGGACCAGAGCATTGTTAGGGATTTAGAAATTCTATCCATGAAAACGCGAAGGTTAGCTGCTTATTATTAGAATAATGGGTTGAATTTCAG</canonical_amplicon>
		<polymorphic_amplicon>GCTGAACACAATATATCAATCAATAGGAAAAACTCTGTAAACACAAAACGAGGAACTTGTCAAAACAACTTTTGCAAGTGGAATCAAAAGMACATGAATATTTGAATGTCTATAGTTTGCTTCTTTTATAGAGCATGAGGTGGAATCATGATAATTTGGGACCAGAGCATTGTTAGGGATTTAGAAATTCTATCCATGAAAACGCGAAGGTTAGCTGCTTATTATTAGAATAATGGGTTGAATTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1231</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>659512</contig_pos>
        <strand>+</strand>
        <context>AGTTTCCTTT[G/T]AAATGTTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGTAATCTCATGTATAATAACAAAGATCACACCTATTCATAGTTTCCTTT</left_flank>
        <right_flank>AAATGTTTGATATTTTCCTTTTCACTTCTCTACAATTTTTTAAAATTGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCTGATGGCCGATTGGAAGACCGTGGTAGCAGACGAGAATCAAGAGACTCGCGTGGAAGTTTGGAGAGTGATATGAGTATTCGAATAGGAAACGGGTCGGATATATCGGATGATTCCTGTTTTTCAAGTCATTCGGCAAAGGGAAGACGGCAGAGTTGGCTGGATAATTATGGGCATTCTGTTAGTTTGGAGCAAAATACAAATGGATTTTTGGAAACGACATCTAGAAATTTAGGAGATAGAAATAGTATGAAGTGAGTTGAGGGAGATAAGTTATTGTTTTTATTTCATATTTGAAATTTTCAGTTTCAAACAAAGGAATGCGCGCGCTTCGGAAAGAAGAGCCCGTACCCGATCACCGAATGCTGAACTAGAACCACACCGTGAACATCCCCCAGCTCGACCAAATTCATTCTCGAATCTCGGACACAATATCGTACTCACCTACCGTAATCTCATGTATAATAACAAAGATCACACCTATTCATAGTTTCCTTTTAAATGTTTGATATTTTCCTTTTCACTTCTCTACAATTTTTTAAAATTGATGTAGTTTGTGTCCCCCTGTTTCTTTGTGATATCTTCTTCCCTGTTCTCGCTCCCCCCAATGACATGGTTTTTATGTAAAAAAAAGAATAAATGTGAATTCAATAAAAAATGAATTATGAATATTGACTGTAGTTGTCATATTTAGCTGAAACTTGAACTCTCGCTGGATTTCTTGAGCTCAATCCTGTAGATCGCAATGAGAATAGTCCAGAATCAAAGGTTGAAGGTGTTGGGGCGATGTTTCTAGTCACTAGAGGGGTCACGGATGTCGGTCGGAGAGTAGACTGAGTTGTATAAGTTCGGAGACGGCTGTTCAGAGAAGTTGACGGTTTTCTCTGAAAATTTGAAAATGAATATCCCAAAAAATTCACTTTAAGTAGGTGTTGTCCTTATCTTAATAGGTATTGTTAGAATAAAAATAAACTGTCAGCTACCATATGCAGAAAATAG</canonical>
            <polymorphic>CGCTGATGGCCGATTGGAAGACCGTGGTAGCAGACGAGAATCAAGAGACTCGCGTGGAAGTTTGGAGAGTGATATGAGTATTCGAATAGGAAACGGGTCGGATATATCGGATGATTCCTGTTTTTCAAGTCATTCGGCAAAGGGAAGACGGCAGAGTTGGCTGGATAATTATGGGCATTCTGTTAGTTTGGAGCAAAATACAAATGGATTTTTGGAAACGACATCTAGAAATTTAGGAGATAGAAATAGTATGAAGTGAGTTGAGGGAGATAAGTTATTGTTTTTATTTCATATTTGAAATTTTCAGTTTCAAACAAAGGAATGCGCGCGCTTCGGAAAGAAGAGCCCGTACCCGATCACCGAATGCTGAACTAGAACCACACCGTGAACATCCCCCAGCTCGACCAAATTCATTCTCGAATCTCGGACACAATATCGTACTCACCTACCGTAATCTCATGTATAATAACAAAGATCACACCTATTCATAGTTTCCTTTKAAATGTTTGATATTTTCCTTTTCACTTCTCTACAATTTTTTAAAATTGATGTAGTTTGTGTCCCCCTGTTTCTTTGTGATATCTTCTTCCCTGTTCTCGCTCCCCCCAATGACATGGTTTTTATGTAAAAAAAAGAATAAATGTGAATTCAATAAAAAATGAATTATGAATATTGACTGTAGTTGTCATATTTAGCTGAAACTTGAACTCTCGCTGGATTTCTTGAGCTCAATCCTGTAGATCGCAATGAGAATAGTCCAGAATCAAAGGTTGAAGGTGTTGGGGCGATGTTTCTAGTCACTAGAGGGGTCACGGATGTCGGTCGGAGAGTAGACTGAGTTGTATAAGTTCGGAGACGGCTGTTCAGAGAAGTTGACGGTTTTCTCTGAAAATTTGAAAATGAATATCCCAAAAAATTCACTTTAAGTAGGTGTTGTCCTTATCTTAATAGGTATTGTTAGAATAAAAATAAACTGTCAGCTACCATATGCAGAAAATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 459 41</canonical_bands>
                <polymorphic_bands>541 459</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>499 383 55 41 22</canonical_bands>
                <polymorphic_bands>540 383 55 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCACCGAATGCTGAACTA</pcr_primer_p1>
		<pcr_primer_p2>GAGAACAGGGAAGAAGATATCAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GATCACCGAATGCTGAACTAGAACCACACCGTGAACATCCCCCAGCTCGACCAAATTCATTCTCGAATCTCGGACACAATATCGTACTCACCTACCGTAATCTCATGTATAATAACAAAGATCACACCTATTCATAGTTTCCTTTTAAATGTTTGATATTTTCCTTTTCACTTCTCTACAATTTTTTAAAATTGATGTAGTTTGTGTCCCCCTGTTTCTTTGTGATATCTTCTTCCCTGTTCTC</canonical_amplicon>
		<polymorphic_amplicon>GATCACCGAATGCTGAACTAGAACCACACCGTGAACATCCCCCAGCTCGACCAAATTCATTCTCGAATCTCGGACACAATATCGTACTCACCTACCGTAATCTCATGTATAATAACAAAGATCACACCTATTCATAGTTTCCTTTKAAATGTTTGATATTTTCCTTTTCACTTCTCTACAATTTTTTAAAATTGATGTAGTTTGTGTCCCCCTGTTTCTTTGTGATATCTTCTTCCCTGTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1232</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>661777</contig_pos>
        <strand>+</strand>
        <context>ATTGCATTTG[C/T]CGAGTCTATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAGAATGACCTAAAAGTTTGGAGAGTAGCAACTGATATAATTGCATTTG</left_flank>
        <right_flank>CGAGTCTATTGAACACCGGCCGCGTGGCGCAATGGATAACGCGTCTGCCT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGAATAGTTTTTCTTCGGTTCATGAGAATATTCTGGGGTTTCAAATCCCGATGTACAATGTGTTTTGAATGCATGTGATCCAGAGCAATGAGAATCTCAAAAAATTTCATTTTTGAATTTTCAGAATTTTTTTAAAACTACCTGTGTAAAATATTCCAACACTGTCTTCTCTGGAAAATGCTCTTTGTTGTCACTTATTGCTCTTTGTTCGTTGATAAGTCTTTCGAGAGTTCCTCCTTCCGCGTATTGCATAACTGAATTTGAATTATTATTTTTTAATTTTCTACCATCTCAAAGTCCATATCTCACCAATAGCTAGTTGATTATCAATCGTAAAGTAGTCAATATACCCGATGATCAATGGATGTTGTACTTTTTTCAAAAGCGCAACTTCACTTTGAATGTATTTCTCCTCTTTCTCCGACATTCCGTGGGTGTTGATGAGCTTTAGAATGACCTAAAAGTTTGGAGAGTAGCAACTGATATAATTGCATTTGCCGAGTCTATTGAACACCGGCCGCGTGGCGCAATGGATAACGCGTCTGCCTACGGAGCAGAAGATTGTAGGTTCGAATCCTGCCGTGGTCGAAATCTTTTTTTTTCTTAAATCTCACCTTCGAAGCATTATTTTTCTCTCGACAGAGCCAACATACACCAAAAGCACCACGACCAACGACTCGTACTTTTTCATAACTGTCCATGTCTAATAATAGAATAAAAGGTTCGACTAGAATAAGAAAAAGACGTGCTATAAAATGCGAAGAAGACGTGACTAATCAGTGAAAAATAATCGATATCTGTGTTCCTCTGCATCTCTCAGAACGAGAACTGGTTTATCATTCAATGTAGTGTTGAAGGAGAAGAAGAAAAATGCCGCGCATTTTTTTTTCATTATCTCTACGATGCTGAATTCTAGTACTTTTTCACATTATACACTCAATTTTACCCTTTATAAAGATGAACAATATATTTACATTCCGATTTATTTATAACCTGAT</canonical>
            <polymorphic>TCAGAATAGTTTTTCTTCGGTTCATGAGAATATTCTGGGGTTTCAAATCCCGATGTACAATGTGTTTTGAATGCATGTGATCCAGAGCAATGAGAATCTCAAAAAATTTCATTTTTGAATTTTCAGAATTTTTTTAAAACTACCTGTGTAAAATATTCCAACACTGTCTTCTCTGGAAAATGCTCTTTGTTGTCACTTATTGCTCTTTGTTCGTTGATAAGTCTTTCGAGAGTTCCTCCTTCCGCGTATTGCATAACTGAATTTGAATTATTATTTTTTAATTTTCTACCATCTCAAAGTCCATATCTCACCAATAGCTAGTTGATTATCAATCGTAAAGTAGTCAATATACCCGATGATCAATGGATGTTGTACTTTTTTCAAAAGCGCAACTTCACTTTGAATGTATTTCTCCTCTTTCTCCGACATTCCGTGGGTGTTGATGAGCTTTAGAATGACCTAAAAGTTTGGAGAGTAGCAACTGATATAATTGCATTTGYCGAGTCTATTGAACACCGGCCGCGTGGCGCAATGGATAACGCGTCTGCCTACGGAGCAGAAGATTGTAGGTTCGAATCCTGCCGTGGTCGAAATCTTTTTTTTTCTTAAATCTCACCTTCGAAGCATTATTTTTCTCTCGACAGAGCCAACATACACCAAAAGCACCACGACCAACGACTCGTACTTTTTCATAACTGTCCATGTCTAATAATAGAATAAAAGGTTCGACTAGAATAAGAAAAAGACGTGCTATAAAATGCGAAGAAGACGTGACTAATCAGTGAAAAATAATCGATATCTGTGTTCCTCTGCATCTCTCAGAACGAGAACTGGTTTATCATTCAATGTAGTGTTGAAGGAGAAGAAGAAAAATGCCGCGCATTTTTTTTTCATTATCTCTACGATGCTGAATTCTAGTACTTTTTCACATTATACACTCAATTTTACCCTTTATAAAGATGAACAATATATTTACATTCCGATTTATTTATAACCTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATGTATTTCTCCTCTTTCTCC</pcr_primer_p1>
		<pcr_primer_p2>GCTCTGTCGAGAGAAAAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAATGTATTTCTCCTCTTTCTCCGACATTCCGTGGGTGTTGATGAGCTTTAGAATGACCTAAAAGTTTGGAGAGTAGCAACTGATATAATTGCATTTGCCGAGTCTATTGAACACCGGCCGCGTGGCGCAATGGATAACGCGTCTGCCTACGGAGCAGAAGATTGTAGGTTCGAATCCTGCCGTGGTCGAAATCTTTTTTTTTCTTAAATCTCACCTTCGAAGCATTATTTTTCTCTCGACAGAGC</canonical_amplicon>
		<polymorphic_amplicon>GAATGTATTTCTCCTCTTTCTCCGACATTCCGTGGGTGTTGATGAGCTTTAGAATGACCTAAAAGTTTGGAGAGTAGCAACTGATATAATTGCATTTGYCGAGTCTATTGAACACCGGCCGCGTGGCGCAATGGATAACGCGTCTGCCTACGGAGCAGAAGATTGTAGGTTCGAATCCTGCCGTGGTCGAAATCTTTTTTTTTCTTAAATCTCACCTTCGAAGCATTATTTTTCTCTCGACAGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1233</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>774369</contig_pos>
        <strand>+</strand>
        <context>ATATTAGTTT[A/C]TAGATAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATTATAATCCTTTTTTGTATTTCGGACTGTTACCGAAATATATTAGTTT</left_flank>
        <right_flank>TAGATAAATTTGGATTTTGGAAGATTTTGTCCAAAGGGAGAGAGAGAGAG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTCCCTCTATAGTTCCTAATAACTAGGTTTAAATGCGCCGAAGGCGCACCAGCCAGCTGTTTGAAGCTGTAGAGAAGCGACAAACAGGCTGGTAATTCCTAACTCCTACACCCAAATACGTGCGATATCAAAACTCAAAAAAAAATCAGAACTCCAAATTCTCGAAATTTTCATAATCCTCATACACTTTTGTACAATCTCGGTATCTAGATAGATACAAAAAAACAAGTTATGTCCTAAATCTGCTCTTTTCTACAAAGTCCGGTCCAATTGTTTCTTCTTTTTTTCGATATGAAACCAGTGGAAACAAAAACGTACATGAATTGCGCAAAAAACTAATCGGTTTTATGATTTTGTTTTATTCGCTTTGTGTTGTCCATTACCCCAACCAAAAAAAAACTAGATAAAGTATTGAGAAATGAGGTATCGAGATTGTACATACATATATATTATAATCCTTTTTTGTATTTCGGACTGTTACCGAAATATATTAGTTTATAGATAAATTTGGATTTTGGAAGATTTTGTCCAAAGGGAGAGAGAGAGAGAGAGAGCCAAGAGAAAAAGAGGAAGCACTTGAAATGATGACCGGATAATAGATGACCGGTGTGTCAACATGAAACAAAACAACAGCACTTGAAATCCAAAAAATAAGAAAACTGAGAAGAAACGAAGGCACTGGGGTGAAAAGTGCACAAGAGATCCAAGAAGAGATCTCTGCCAAAAATGGTTTAGAGGCTTAAAGATAACAAGAAAGCGCAATTTGAAGAAAAAAGATTAGCTAACTATTTCAGGACTGCTCCTTCCATTCCTCTAACTATTCTGTGAGTTGGACATACGATGAGCTGAGCAATGATATTGTTTTCGAACTAACTTCTCGTTCTGATTTCTCAAGTTTCTATACTGCCATTGGTTTCGGAAACGAGAAGCCGGTAAGTATATTCTAGAACAATTCATCATCATCTGTTTCCTACTGTAGGAAGACGTCATGGCTGTAT</canonical>
            <polymorphic>CATTCCCTCTATAGTTCCTAATAACTAGGTTTAAATGCGCCGAAGGCGCACCAGCCAGCTGTTTGAAGCTGTAGAGAAGCGACAAACAGGCTGGTAATTCCTAACTCCTACACCCAAATACGTGCGATATCAAAACTCAAAAAAAAATCAGAACTCCAAATTCTCGAAATTTTCATAATCCTCATACACTTTTGTACAATCTCGGTATCTAGATAGATACAAAAAAACAAGTTATGTCCTAAATCTGCTCTTTTCTACAAAGTCCGGTCCAATTGTTTCTTCTTTTTTTCGATATGAAACCAGTGGAAACAAAAACGTACATGAATTGCGCAAAAAACTAATCGGTTTTATGATTTTGTTTTATTCGCTTTGTGTTGTCCATTACCCCAACCAAAAAAAAACTAGATAAAGTATTGAGAAATGAGGTATCGAGATTGTACATACATATATATTATAATCCTTTTTTGTATTTCGGACTGTTACCGAAATATATTAGTTTMTAGATAAATTTGGATTTTGGAAGATTTTGTCCAAAGGGAGAGAGAGAGAGAGAGAGCCAAGAGAAAAAGAGGAAGCACTTGAAATGATGACCGGATAATAGATGACCGGTGTGTCAACATGAAACAAAACAACAGCACTTGAAATCCAAAAAATAAGAAAACTGAGAAGAAACGAAGGCACTGGGGTGAAAAGTGCACAAGAGATCCAAGAAGAGATCTCTGCCAAAAATGGTTTAGAGGCTTAAAGATAACAAGAAAGCGCAATTTGAAGAAAAAAGATTAGCTAACTATTTCAGGACTGCTCCTTCCATTCCTCTAACTATTCTGTGAGTTGGACATACGATGAGCTGAGCAATGATATTGTTTTCGAACTAACTTCTCGTTCTGATTTCTCAAGTTTCTATACTGCCATTGGTTTCGGAAACGAGAAGCCGGTAAGTATATTCTAGAACAATTCATCATCATCTGTTTCCTACTGTAGGAAGACGTCATGGCTGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTGTTTTATTCGCTTTGT</pcr_primer_p1>
		<pcr_primer_p2>ATCTATTATCCGGTCATCATTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GATTTTGTTTTATTCGCTTTGTGTTGTCCATTACCCCAACCAAAAAAAAACTAGATAAAGTATTGAGAAATGAGGTATCGAGATTGTACATACATATATATTATAATCCTTTTTTGTATTTCGGACTGTTACCGAAATATATTAGTTTATAGATAAATTTGGATTTTGGAAGATTTTGTCCAAAGGGAGAGAGAGAGAGAGAGAGCCAAGAGAAAAAGAGGAAGCACTTGAAATGATGACCGGATAATAGAT</canonical_amplicon>
		<polymorphic_amplicon>GATTTTGTTTTATTCGCTTTGTGTTGTCCATTACCCCAACCAAAAAAAAACTAGATAAAGTATTGAGAAATGAGGTATCGAGATTGTACATACATATATATTATAATCCTTTTTTGTATTTCGGACTGTTACCGAAATATATTAGTTTMTAGATAAATTTGGATTTTGGAAGATTTTGTCCAAAGGGAGAGAGAGAGAGAGAGAGCCAAGAGAAAAAGAGGAAGCACTTGAAATGATGACCGGATAATAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1274</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>779720</contig_pos>
        <strand>+</strand>
        <context>TAGAGCAAAA[A/T]AATGAGAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATATTTTTTTCAAGGCCCTTCTCATTTCGCTGGACTAGGATAGAGCAAAA</left_flank>
        <right_flank>AATGAGAAAGGAAAAAAGAATATTCTCAACATTTCTATAAAATTTCCAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATTTGAAGGGACCCTGAGAAAGTAAATGATATACCGCCACCAAGGGAAGGCGATGTGTAGTAGTATTCAATATTCTGGATTTGGAAGTTGAAAAAATCCCATAATATCTCCTATTTTGGAATTATTTCTCCTATTTTTTCTTGATTTTCCAATTCTCCAAATATTGATTCTAAAACAAGTGAAACGAATATTTTTTGGTTTTATAATTTCAAAAATTTTTTTATGGTTATAATTTTAGAAAACTGGAAACAATTGAAATTTGAAATTGTAAGAAAAGGTGGTTTTCTTCAAAAAACCGAAATCTTAATATTTTTGTATTACTTTCTCGTAATCTTCTAAAAGTTTTAAATCAGAATATGAAAAACCGATACTATAAAGAAAGAAGTTTCAAAATATCCAAAATATGAAATACTACACATTATCTTCACTTGATGTATATTTTTGGGATATTTTTTTCAAGGCCCTTCTCATTTCGCTGGACTAGGATAGAGCAAAATAATGAGAAAGGAAAAAAGAATATTCTCAACATTTCTATAAAATTTCCAGAAACTTTAACAGAACCTGATAACTATTAGAACTAAAAAAATACAAATGAAATTAAAATGAAGTTTCATTATTGATTGAAAATTGATAGAAAATAGGATTTGTGGGTATTTCCTGAGAACGCAGTGCAAATTTTCATTCCGGACCGTGATTTGCACCTCGGACCGCTATAATCATATAGAGACAAAGTTTCTATTGATCCCACAAAAAACTTCAGAATACTTACCTGCACAGAAGTGTAGAACTCATTCAATGGTTGTAAAAATGCCATGTTGACAGCTACAGTAATATGCAGAGAAATGGCTCCGAGATACATCCAAAATGGGCCGAGAACACTGAAAAAAAATCTTATTGATACGTACCCTAAAAGCTGTCATAGAAGGGCTCCCTAAATTTTTACTTTAATCCAATATATCTCGGTTCCTGTCAAAGATATCAAGAAGTTGTCAACTGA</canonical>
            <polymorphic>TAAATTTGAAGGGACCCTGAGAAAGTAAATGATATACCGCCACCAAGGGAAGGCGATGTGTAGTAGTATTCAATATTCTGGATTTGGAAGTTGAAAAAATCCCATAATATCTCCTATTTTGGAATTATTTCTCCTATTTTTTCTTGATTTTCCAATTCTCCAAATATTGATTCTAAAACAAGTGAAACGAATATTTTTTGGTTTTATAATTTCAAAAATTTTTTTATGGTTATAATTTTAGAAAACTGGAAACAATTGAAATTTGAAATTGTAAGAAAAGGTGGTTTTCTTCAAAAAACCGAAATCTTAATATTTTTGTATTACTTTCTCGTAATCTTCTAAAAGTTTTAAATCAGAATATGAAAAACCGATACTATAAAGAAAGAAGTTTCAAAATATCCAAAATATGAAATACTACACATTATCTTCACTTGATGTATATTTTTGGGATATTTTTTTCAAGGCCCTTCTCATTTCGCTGGACTAGGATAGAGCAAAAWAATGAGAAAGGAAAAAAGAATATTCTCAACATTTCTATAAAATTTCCAGAAACTTTAACAGAACCTGATAACTATTAGAACTAAAAAAATACAAATGAAATTAAAATGAAGTTTCATTATTGATTGAAAATTGATAGAAAATAGGATTTGTGGGTATTTCCTGAGAACGCAGTGCAAATTTTCATTCCGGACCGTGATTTGCACCTCGGACCGCTATAATCATATAGAGACAAAGTTTCTATTGATCCCACAAAAAACTTCAGAATACTTACCTGCACAGAAGTGTAGAACTCATTCAATGGTTGTAAAAATGCCATGTTGACAGCTACAGTAATATGCAGAGAAATGGCTCCGAGATACATCCAAAATGGGCCGAGAACACTGAAAAAAAATCTTATTGATACGTACCCTAAAAGCTGTCATAGAAGGGCTCCCTAAATTTTTACTTTAATCCAATATATCTCGGTTCCTGTCAAAGATATCAAGAAGTTGTCAACTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCAGAATATGAAAAACCGATAC</pcr_primer_p1>
		<pcr_primer_p2>AGTTATCAGGTTCTGTTAAAGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>AATCAGAATATGAAAAACCGATACTATAAAGAAAGAAGTTTCAAAATATCCAAAATATGAAATACTACACATTATCTTCACTTGATGTATATTTTTGGGATATTTTTTTCAAGGCCCTTCTCATTTCGCTGGACTAGGATAGAGCAAAATAATGAGAAAGGAAAAAAGAATATTCTCAACATTTCTATAAAATTTCCAGAAACTTTAACAGAACCTGATAACT</canonical_amplicon>
		<polymorphic_amplicon>AATCAGAATATGAAAAACCGATACTATAAAGAAAGAAGTTTCAAAATATCCAAAATATGAAATACTACACATTATCTTCACTTGATGTATATTTTTGGGATATTTTTTTCAAGGCCCTTCTCATTTCGCTGGACTAGGATAGAGCAAAAWAATGAGAAAGGAAAAAAGAATATTCTCAACATTTCTATAAAATTTCCAGAAACTTTAACAGAACCTGATAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1275</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>779569</contig_pos>
        <strand>+</strand>
        <context>CTAAAAGTTT[C/T]AAATCAGAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGAAATCTTAATATTTTTGTATTACTTTCTCGTAATCTTCTAAAAGTTT</left_flank>
        <right_flank>AAATCAGAATATGAAAAACCGATACTATAAAGAAAGAAGTTTCAAAATAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGACCCTGAAAACAACTATCTCAAACTGTATTTTTTTAGCTCTAATAGTTCTCGGGTTCTTTAAGGGTTCTGGAAATTTATAGAAACTTTGAGAAAATTCGTACTTCCTTTTACAATATTTTGAGTCTATTCCAATTCAGAGGTCCCAAATAAATTTGAAGGGACCCTGAGAAAGTAAATGATATACCGCCACCAAGGGAAGGCGATGTGTAGTAGTATTCAATATTCTGGATTTGGAAGTTGAAAAAATCCCATAATATCTCCTATTTTGGAATTATTTCTCCTATTTTTTCTTGATTTTCCAATTCTCCAAATATTGATTCTAAAACAAGTGAAACGAATATTTTTTGGTTTTATAATTTCAAAAATTTTTTTATGGTTATAATTTTAGAAAACTGGAAACAATTGAAATTTGAAATTGTAAGAAAAGGTGGTTTTCTTCAAAAAACCGAAATCTTAATATTTTTGTATTACTTTCTCGTAATCTTCTAAAAGTTTTAAATCAGAATATGAAAAACCGATACTATAAAGAAAGAAGTTTCAAAATATCCAAAATATGAAATACTACACATTATCTTCACTTGATGTATATTTTTGGGATATTTTTTTCAAGGCCCTTCTCATTTCGCTGGACTAGGATAGAGCAAAATAATGAGAAAGGAAAAAAGAATATTCTCAACATTTCTATAAAATTTCCAGAAACTTTAACAGAACCTGATAACTATTAGAACTAAAAAAATACAAATGAAATTAAAATGAAGTTTCATTATTGATTGAAAATTGATAGAAAATAGGATTTGTGGGTATTTCCTGAGAACGCAGTGCAAATTTTCATTCCGGACCGTGATTTGCACCTCGGACCGCTATAATCATATAGAGACAAAGTTTCTATTGATCCCACAAAAAACTTCAGAATACTTACCTGCACAGAAGTGTAGAACTCATTCAATGGTTGTAAAAATGCCATGTTGACAGCTACAGTAATATGCAGAGAAATGG</canonical>
            <polymorphic>AGGACCCTGAAAACAACTATCTCAAACTGTATTTTTTTAGCTCTAATAGTTCTCGGGTTCTTTAAGGGTTCTGGAAATTTATAGAAACTTTGAGAAAATTCGTACTTCCTTTTACAATATTTTGAGTCTATTCCAATTCAGAGGTCCCAAATAAATTTGAAGGGACCCTGAGAAAGTAAATGATATACCGCCACCAAGGGAAGGCGATGTGTAGTAGTATTCAATATTCTGGATTTGGAAGTTGAAAAAATCCCATAATATCTCCTATTTTGGAATTATTTCTCCTATTTTTTCTTGATTTTCCAATTCTCCAAATATTGATTCTAAAACAAGTGAAACGAATATTTTTTGGTTTTATAATTTCAAAAATTTTTTTATGGTTATAATTTTAGAAAACTGGAAACAATTGAAATTTGAAATTGTAAGAAAAGGTGGTTTTCTTCAAAAAACCGAAATCTTAATATTTTTGTATTACTTTCTCGTAATCTTCTAAAAGTTTYAAATCAGAATATGAAAAACCGATACTATAAAGAAAGAAGTTTCAAAATATCCAAAATATGAAATACTACACATTATCTTCACTTGATGTATATTTTTGGGATATTTTTTTCAAGGCCCTTCTCATTTCGCTGGACTAGGATAGAGCAAAATAATGAGAAAGGAAAAAAGAATATTCTCAACATTTCTATAAAATTTCCAGAAACTTTAACAGAACCTGATAACTATTAGAACTAAAAAAATACAAATGAAATTAAAATGAAGTTTCATTATTGATTGAAAATTGATAGAAAATAGGATTTGTGGGTATTTCCTGAGAACGCAGTGCAAATTTTCATTCCGGACCGTGATTTGCACCTCGGACCGCTATAATCATATAGAGACAAAGTTTCTATTGATCCCACAAAAAACTTCAGAATACTTACCTGCACAGAAGTGTAGAACTCATTCAATGGTTGTAAAAATGCCATGTTGACAGCTACAGTAATATGCAGAGAAATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>396 248 207 62 46 41</canonical_bands>
                <polymorphic_bands>396 248 248 62 46</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGAAAACTGGAAACAATTGAA</pcr_primer_p1>
		<pcr_primer_p2>CTAGTCCAGCGAAATGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAGAAAACTGGAAACAATTGAAATTTGAAATTGTAAGAAAAGGTGGTTTTCTTCAAAAAACCGAAATCTTAATATTTTTGTATTACTTTCTCGTAATCTTCTAAAAGTTTTAAATCAGAATATGAAAAACCGATACTATAAAGAAAGAAGTTTCAAAATATCCAAAATATGAAATACTACACATTATCTTCACTTGATGTATATTTTTGGGATATTTTTTTCAAGGCCCTTCTCATTTCGCTGGACTAG</canonical_amplicon>
		<polymorphic_amplicon>TTAGAAAACTGGAAACAATTGAAATTTGAAATTGTAAGAAAAGGTGGTTTTCTTCAAAAAACCGAAATCTTAATATTTTTGTATTACTTTCTCGTAATCTTCTAAAAGTTTYAAATCAGAATATGAAAAACCGATACTATAAAGAAAGAAGTTTCAAAATATCCAAAATATGAAATACTACACATTATCTTCACTTGATGTATATTTTTGGGATATTTTTTTCAAGGCCCTTCTCATTTCGCTGGACTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1276</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>779274</contig_pos>
        <strand>+</strand>
        <context>CAAGGGAAGG[A/C]GATGTGTAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTGAAGGGACCCTGAGAAAGTAAATGATATACCGCCACCAAGGGAAGG</left_flank>
        <right_flank>GATGTGTAGTAGTATTCAATATTCTGGATTTGGAAGTTGAAAAAATCCCA</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTAGAAAATTCGGAAAGCTTCAAGAAGTTTCGGCTCTACAAGATTATAGCGGTCCGAGGAGAAAATAACGGACCGGAATAAAACTTAGACACTGCGTGCTCAGGAAGGACCCACAAATCCTATGTTCATCAACTTTATGGAATATTTTTGCTTTATTATCGTTGATATGAATATTTTCTTCAAATTTCACCAGTTTCTTTTTCAGTTCTGAAACATTTTGTGGAAATTATGGCAATGTTCTTTTATATCCTTCCTCAATTTTTATGGCTCCAGGGGTCCCACGAAAATTGAAAGGACCCTGAAAACAACTATCTCAAACTGTATTTTTTTAGCTCTAATAGTTCTCGGGTTCTTTAAGGGTTCTGGAAATTTATAGAAACTTTGAGAAAATTCGTACTTCCTTTTACAATATTTTGAGTCTATTCCAATTCAGAGGTCCCAAATAAATTTGAAGGGACCCTGAGAAAGTAAATGATATACCGCCACCAAGGGAAGGCGATGTGTAGTAGTATTCAATATTCTGGATTTGGAAGTTGAAAAAATCCCATAATATCTCCTATTTTGGAATTATTTCTCCTATTTTTTCTTGATTTTCCAATTCTCCAAATATTGATTCTAAAACAAGTGAAACGAATATTTTTTGGTTTTATAATTTCAAAAATTTTTTTATGGTTATAATTTTAGAAAACTGGAAACAATTGAAATTTGAAATTGTAAGAAAAGGTGGTTTTCTTCAAAAAACCGAAATCTTAATATTTTTGTATTACTTTCTCGTAATCTTCTAAAAGTTTTAAATCAGAATATGAAAAACCGATACTATAAAGAAAGAAGTTTCAAAATATCCAAAATATGAAATACTACACATTATCTTCACTTGATGTATATTTTTGGGATATTTTTTTCAAGGCCCTTCTCATTTCGCTGGACTAGGATAGAGCAAAATAATGAGAAAGGAAAAAAGAATATTCTCAACATTTCTATAAAATTTCCAGAAACT</canonical>
            <polymorphic>ATTTTAGAAAATTCGGAAAGCTTCAAGAAGTTTCGGCTCTACAAGATTATAGCGGTCCGAGGAGAAAATAACGGACCGGAATAAAACTTAGACACTGCGTGCTCAGGAAGGACCCACAAATCCTATGTTCATCAACTTTATGGAATATTTTTGCTTTATTATCGTTGATATGAATATTTTCTTCAAATTTCACCAGTTTCTTTTTCAGTTCTGAAACATTTTGTGGAAATTATGGCAATGTTCTTTTATATCCTTCCTCAATTTTTATGGCTCCAGGGGTCCCACGAAAATTGAAAGGACCCTGAAAACAACTATCTCAAACTGTATTTTTTTAGCTCTAATAGTTCTCGGGTTCTTTAAGGGTTCTGGAAATTTATAGAAACTTTGAGAAAATTCGTACTTCCTTTTACAATATTTTGAGTCTATTCCAATTCAGAGGTCCCAAATAAATTTGAAGGGACCCTGAGAAAGTAAATGATATACCGCCACCAAGGGAAGGMGATGTGTAGTAGTATTCAATATTCTGGATTTGGAAGTTGAAAAAATCCCATAATATCTCCTATTTTGGAATTATTTCTCCTATTTTTTCTTGATTTTCCAATTCTCCAAATATTGATTCTAAAACAAGTGAAACGAATATTTTTTGGTTTTATAATTTCAAAAATTTTTTTATGGTTATAATTTTAGAAAACTGGAAACAATTGAAATTTGAAATTGTAAGAAAAGGTGGTTTTCTTCAAAAAACCGAAATCTTAATATTTTTGTATTACTTTCTCGTAATCTTCTAAAAGTTTTAAATCAGAATATGAAAAACCGATACTATAAAGAAAGAAGTTTCAAAATATCCAAAATATGAAATACTACACATTATCTTCACTTGATGTATATTTTTGGGATATTTTTTTCAAGGCCCTTCTCATTTCGCTGGACTAGGATAGAGCAAAATAATGAGAAAGGAAAAAAGAATATTCTCAACATTTCTATAAAATTTCCAGAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTCGTACTTCCTTTTACA</pcr_primer_p1>
		<pcr_primer_p2>TTCGTTTCACTTGTTTTAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTCGTACTTCCTTTTACAATATTTTGAGTCTATTCCAATTCAGAGGTCCCAAATAAATTTGAAGGGACCCTGAGAAAGTAAATGATATACCGCCACCAAGGGAAGGCGATGTGTAGTAGTATTCAATATTCTGGATTTGGAAGTTGAAAAAATCCCATAATATCTCCTATTTTGGAATTATTTCTCCTATTTTTTCTTGATTTTCCAATTCTCCAAATATTGATTCTAAAACAAGTGAAACGAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTCGTACTTCCTTTTACAATATTTTGAGTCTATTCCAATTCAGAGGTCCCAAATAAATTTGAAGGGACCCTGAGAAAGTAAATGATATACCGCCACCAAGGGAAGGMGATGTGTAGTAGTATTCAATATTCTGGATTTGGAAGTTGAAAAAATCCCATAATATCTCCTATTTTGGAATTATTTCTCCTATTTTTTCTTGATTTTCCAATTCTCCAAATATTGATTCTAAAACAAGTGAAACGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1277</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>785053</contig_pos>
        <strand>+</strand>
        <context>AGAATACAAT[C/T]AAACATTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGAAAAAGATTGGAATCAAAAATAAACCTGATGAATTCAAGAATACAAT</left_flank>
        <right_flank>AAACATTCCATATCTTTCTGATGTGACGACTCCCTGCAAAAGCGAACGAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACGAGAAATGTTAGCTTCATTCGATCTCCGAGCATTCACACCAATTGAATACACATTGCGAGGTGAAGGCACATTCAACAACAGGTTGGTTTTGTGAAGATTCTGAAAATTAACAAAATCGGAAAATGTTAAAGAGATCCCAATGACTATATGCTACCTCAGCAATACTACTTTCTTCCGAAGGAATGCTCGCGAGACACCGTGATTTGTGGATTCTGCTATCGGTCTTTCAACCGTTTCGATTTTCTACCCCATATTACACTACACGGATTTATGGTTGATAGCAGGTTGACTTTTAATGATCGCCATCTTAAACCATCTCTAATTTCAGTAAAACTTGTCTACTTCGTCCAGTTGTCTTTAACGAAAAGGCATGTCAGCTGATGGGACAAGAAAAATACACCGACGAAGATCAACACGACGAACCCTGCAGAATTCTTTCAATCGCTGGAAAAAGATTGGAATCAAAAATAAACCTGATGAATTCAAGAATACAATTAAACATTCCATATCTTTCTGATGTGACGACTCCCTGCAAAAGCGAACGAGAAACAGATAGCGAATCTCAGACGGTGATTAAAAGTGTGCAAGATTTAGTTACCCTATTATTCGGAAATTTCAGCCTCGGAGCCGGAAGTCAGCTATGGATGCTAAGAGAATCCTTTCCGAAACGTTCAAAGTTCTTCAAGAGAACGCTCGCAACCGGAAGAATACATGGAATGAGTATTCTTCCTGTTCTTCTTCTTCCAGTGACGATGAAGACTCAGAAGAAGAACGATATGAGAAAGAATTAGATTTGCAAGCAACGACAGTAGCAGAAAGAGCCGCGAGATCAAAAAGTCTAGAGAAACTGAAAAAAATAGATTTGAGCACAATGAGACCAGCTGAAATACAAGAAATGATACGAAAAGAAGCAGAAAAGAAAGGTGTGAAATGGAATATAAATGATTCCAGTGAATCATCATCATCATCGGATGATTCAGAGTCAGATGAAGAAGT</canonical>
            <polymorphic>AACGAGAAATGTTAGCTTCATTCGATCTCCGAGCATTCACACCAATTGAATACACATTGCGAGGTGAAGGCACATTCAACAACAGGTTGGTTTTGTGAAGATTCTGAAAATTAACAAAATCGGAAAATGTTAAAGAGATCCCAATGACTATATGCTACCTCAGCAATACTACTTTCTTCCGAAGGAATGCTCGCGAGACACCGTGATTTGTGGATTCTGCTATCGGTCTTTCAACCGTTTCGATTTTCTACCCCATATTACACTACACGGATTTATGGTTGATAGCAGGTTGACTTTTAATGATCGCCATCTTAAACCATCTCTAATTTCAGTAAAACTTGTCTACTTCGTCCAGTTGTCTTTAACGAAAAGGCATGTCAGCTGATGGGACAAGAAAAATACACCGACGAAGATCAACACGACGAACCCTGCAGAATTCTTTCAATCGCTGGAAAAAGATTGGAATCAAAAATAAACCTGATGAATTCAAGAATACAATYAAACATTCCATATCTTTCTGATGTGACGACTCCCTGCAAAAGCGAACGAGAAACAGATAGCGAATCTCAGACGGTGATTAAAAGTGTGCAAGATTTAGTTACCCTATTATTCGGAAATTTCAGCCTCGGAGCCGGAAGTCAGCTATGGATGCTAAGAGAATCCTTTCCGAAACGTTCAAAGTTCTTCAAGAGAACGCTCGCAACCGGAAGAATACATGGAATGAGTATTCTTCCTGTTCTTCTTCTTCCAGTGACGATGAAGACTCAGAAGAAGAACGATATGAGAAAGAATTAGATTTGCAAGCAACGACAGTAGCAGAAAGAGCCGCGAGATCAAAAAGTCTAGAGAAACTGAAAAAAATAGATTTGAGCACAATGAGACCAGCTGAAATACAAGAAATGATACGAAAAGAAGCAGAAAAGAAAGGTGTGAAATGGAATATAAATGATTCCAGTGAATCATCATCATCATCGGATGATTCAGAGTCAGATGAAGAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>422 167 137 111 79 50 19 15</canonical_bands>
                <polymorphic_bands>422 216 167 111 50 19 15</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>216 211 174 119 110 65 49 43 13</canonical_bands>
                <polymorphic_bands>216 211 174 132 110 65 49 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACTTCGTCCAGTTGTCTTTAAC</pcr_primer_p1>
		<pcr_primer_p2>AAATCTTGCACACTTTTAATCAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TACTTCGTCCAGTTGTCTTTAACGAAAAGGCATGTCAGCTGATGGGACAAGAAAAATACACCGACGAAGATCAACACGACGAACCCTGCAGAATTCTTTCAATCGCTGGAAAAAGATTGGAATCAAAAATAAACCTGATGAATTCAAGAATACAATTAAACATTCCATATCTTTCTGATGTGACGACTCCCTGCAAAAGCGAACGAGAAACAGATAGCGAATCTCAGACGGTGATTAAAAGTGTGCAAGATTT</canonical_amplicon>
		<polymorphic_amplicon>TACTTCGTCCAGTTGTCTTTAACGAAAAGGCATGTCAGCTGATGGGACAAGAAAAATACACCGACGAAGATCAACACGACGAACCCTGCAGAATTCTTTCAATCGCTGGAAAAAGATTGGAATCAAAAATAAACCTGATGAATTCAAGAATACAATYAAACATTCCATATCTTTCTGATGTGACGACTCCCTGCAAAAGCGAACGAGAAACAGATAGCGAATCTCAGACGGTGATTAAAAGTGTGCAAGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1278</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>786088</contig_pos>
        <strand>+</strand>
        <context>CTACGAAACT[A/G]TTCATACCGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTCGTGCTTCCTCAAGAGCAATGAACGAAGTCGTTGCTACTACGAAACT</left_flank>
        <right_flank>TTCATACCGTCCGTGAGAATCAAGCAACTTCCGAATGATGGAGTTTTCAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAAATTAAAGCATTGTAAGTTTTTAAAATGTTTAATTTTCTACTTTGTTTGTTTTTCAGAATCCGCCAAGCTGCGAAAAGGAAACAAATCAAATTATCTAGCGGGTCCAGTAGTAGTGATAGTGATTGACAATCCTCAAATTTTAATGAAACCGGTTCTGTATCTTTTTTAATATTTCTGTTGTTTTTAAAAAATTAATTTGTTGAGATAAACTGAAAAATAATTCTTGATACGATGTTGTTGAAACCTGCTCAAAAGCTCAGGATGATTTTTTAAAATCTTTTATCTTTTATCAGTGATCAAATTTCGTTCAGATGACCGAAACCTACGAACTCAAAGATTTGCCAGCTGAAATGCAGCGACTTCTGGTGGGAAAGTGTGATTTGATCACCAGGTTAATAGAAATTTAAACTCCGTCACATCATGGGGTTCATTTTCAGGTGTAGACTTCGTGCTTCCTCAAGAGCAATGAACGAAGTCGTTGCTACTACGAAACTATTCATACCGTCCGTGAGAATCAAGCAACTTCCGAATGATGGAGTTTTCATAAAACTCGTTATCAAACTTTTCAAAGATGAATACACTCTGAAATTCAAAGAAACTGAAACAGGTGGAACTCGAATCTGCCAGGCTTTTCGAAGTGAAATTATCGTCGAGGACTCCCAACCAATCTGTGAAGCAGTGAACTGGTTCAAAATAATGTGTCTTCAAAAAAATGTGACAATTGGAAACTTGATAATTGAAACAACTGATAACGCTGATGGTATGGGGCAGAAGTTCGGTGAATTGGTTCAAAACAGCGATGAGATTCTGAGAGTAAGAGCTATTCAAGTGAGCGGATCAGGCGCGGCAAGAATGATGTGGAAATTCATGGAACACTGTGACACCAGTGTTTTAAACGAATTGAAAGTGAAAGAAACCGAGGGTTTCGAATTGTTCGGCAGCCAAGATTCCATTTTGAAAAAACTGGAAAATGTGGAAGCAAGTTTTTTTTAAAT</canonical>
            <polymorphic>GAGAAATTAAAGCATTGTAAGTTTTTAAAATGTTTAATTTTCTACTTTGTTTGTTTTTCAGAATCCGCCAAGCTGCGAAAAGGAAACAAATCAAATTATCTAGCGGGTCCAGTAGTAGTGATAGTGATTGACAATCCTCAAATTTTAATGAAACCGGTTCTGTATCTTTTTTAATATTTCTGTTGTTTTTAAAAAATTAATTTGTTGAGATAAACTGAAAAATAATTCTTGATACGATGTTGTTGAAACCTGCTCAAAAGCTCAGGATGATTTTTTAAAATCTTTTATCTTTTATCAGTGATCAAATTTCGTTCAGATGACCGAAACCTACGAACTCAAAGATTTGCCAGCTGAAATGCAGCGACTTCTGGTGGGAAAGTGTGATTTGATCACCAGGTTAATAGAAATTTAAACTCCGTCACATCATGGGGTTCATTTTCAGGTGTAGACTTCGTGCTTCCTCAAGAGCAATGAACGAAGTCGTTGCTACTACGAAACTRTTCATACCGTCCGTGAGAATCAAGCAACTTCCGAATGATGGAGTTTTCATAAAACTCGTTATCAAACTTTTCAAAGATGAATACACTCTGAAATTCAAAGAAACTGAAACAGGTGGAACTCGAATCTGCCAGGCTTTTCGAAGTGAAATTATCGTCGAGGACTCCCAACCAATCTGTGAAGCAGTGAACTGGTTCAAAATAATGTGTCTTCAAAAAAATGTGACAATTGGAAACTTGATAATTGAAACAACTGATAACGCTGATGGTATGGGGCAGAAGTTCGGTGAATTGGTTCAAAACAGCGATGAGATTCTGAGAGTAAGAGCTATTCAAGTGAGCGGATCAGGCGCGGCAAGAATGATGTGGAAATTCATGGAACACTGTGACACCAGTGTTTTAAACGAATTGAAAGTGAAAGAAACCGAGGGTTTCGAATTGTTCGGCAGCCAAGATTCCATTTTGAAAAAACTGGAAAATGTGGAAGCAAGTTTTTTTTAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTAAACTCCGTCACATCAT</pcr_primer_p1>
		<pcr_primer_p2>GACGATAATTTCACTTCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATTTAAACTCCGTCACATCATGGGGTTCATTTTCAGGTGTAGACTTCGTGCTTCCTCAAGAGCAATGAACGAAGTCGTTGCTACTACGAAACTATTCATACCGTCCGTGAGAATCAAGCAACTTCCGAATGATGGAGTTTTCATAAAACTCGTTATCAAACTTTTCAAAGATGAATACACTCTGAAATTCAAAGAAACTGAAACAGGTGGAACTCGAATCTGCCAGGCTTTTCGAAGTGAAATTATCGTC</canonical_amplicon>
		<polymorphic_amplicon>AATTTAAACTCCGTCACATCATGGGGTTCATTTTCAGGTGTAGACTTCGTGCTTCCTCAAGAGCAATGAACGAAGTCGTTGCTACTACGAAACTRTTCATACCGTCCGTGAGAATCAAGCAACTTCCGAATGATGGAGTTTTCATAAAACTCGTTATCAAACTTTTCAAAGATGAATACACTCTGAAATTCAAAGAAACTGAAACAGGTGGAACTCGAATCTGCCAGGCTTTTCGAAGTGAAATTATCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1279</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>799110</contig_pos>
        <strand>+</strand>
        <context>GTAGATTTTT[A/G]GAGTTTTATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCACTACTCTATGTGCCACATCCCTTTATCATTCCTGGAGGTAGATTTTT</left_flank>
        <right_flank>GAGTTTTATTACTGGTACTTGAATATTTCCATGCTTCGAATCATATTATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTTTAAGAGAATGAGATAGATAAGCTCTTCAAAGTTGACCGGTTTTTCTAGAGAACCTTTGATGTTCTATCTCATAAAGCAAAGAATTTTGAGTACAAATGAAGATAGTAATTGTTTTTATGAGCCTCTTTGTATTTCAGTTACGACATTACGACATTTCGACGAACTGGGAGACAGAACATCCGATATGATTATTCTCCGAGAATTTGTAACATCTCATTTCAATCCGCCCGGAAGTGAACTGGTTGAATGGTTCCCACCAGATTGGGTGGATTTCCCTTCGAATTTCTTGAACATTCATGATTATCATCATCGGAGATGGGCATTGCATTTACATCGGATTTGGAAAGATCTATGCAGAAAAGTTGGCATCTAAAACTGATTCTGAATATAAATTCTTAACATTCCAGGTGCGAGATGATGTGAAACATCGCCAGGATCACTACTCACTACTCTATGTGCCACATCCCTTTATCATTCCTGGAGGTAGATTTTTAGAGTTTTATTACTGGTACTTGAATATTTCCATGCTTCGAATCATATTATCTGTTTAGGGATACATTCTGGATATTGAAAGGGCTTCTTTTCTCGGAGATGTACGAAACTGCCCGCGGAGTTATCAAAAATCTAGGATACATGGTTGATAAGTAAGTTCTTCTTCTTAAAGTGGAGTTTTTCTGTTTTGAAAACCAACAGAAAGATTAGCGATACTCATGTTCCTCGTTTTCATTCTCAATCTTCGTCAAAATGACACCTATTGATAAGAATTGATTGATGGACTCACAGTCTCTTACATGCGATTATCATATGACCGATTTAGAAAAGAATGTTCGTTTTCTGATTCGAATTAAGGTGTGGTACGAATGTCCTTGGTACATTTGGAAGTCATTAGGGGAAATTGCGCATTTGAAAATCGGGAGACGAACTATTTGATGGATACTTTTCAGTCATGGTTTCGTGCCGAATGGTGGTCGTGTCTATTACCTCACTCGCTCTC</canonical>
            <polymorphic>ATTCTTTAAGAGAATGAGATAGATAAGCTCTTCAAAGTTGACCGGTTTTTCTAGAGAACCTTTGATGTTCTATCTCATAAAGCAAAGAATTTTGAGTACAAATGAAGATAGTAATTGTTTTTATGAGCCTCTTTGTATTTCAGTTACGACATTACGACATTTCGACGAACTGGGAGACAGAACATCCGATATGATTATTCTCCGAGAATTTGTAACATCTCATTTCAATCCGCCCGGAAGTGAACTGGTTGAATGGTTCCCACCAGATTGGGTGGATTTCCCTTCGAATTTCTTGAACATTCATGATTATCATCATCGGAGATGGGCATTGCATTTACATCGGATTTGGAAAGATCTATGCAGAAAAGTTGGCATCTAAAACTGATTCTGAATATAAATTCTTAACATTCCAGGTGCGAGATGATGTGAAACATCGCCAGGATCACTACTCACTACTCTATGTGCCACATCCCTTTATCATTCCTGGAGGTAGATTTTTRGAGTTTTATTACTGGTACTTGAATATTTCCATGCTTCGAATCATATTATCTGTTTAGGGATACATTCTGGATATTGAAAGGGCTTCTTTTCTCGGAGATGTACGAAACTGCCCGCGGAGTTATCAAAAATCTAGGATACATGGTTGATAAGTAAGTTCTTCTTCTTAAAGTGGAGTTTTTCTGTTTTGAAAACCAACAGAAAGATTAGCGATACTCATGTTCCTCGTTTTCATTCTCAATCTTCGTCAAAATGACACCTATTGATAAGAATTGATTGATGGACTCACAGTCTCTTACATGCGATTATCATATGACCGATTTAGAAAAGAATGTTCGTTTTCTGATTCGAATTAAGGTGTGGTACGAATGTCCTTGGTACATTTGGAAGTCATTAGGGGAAATTGCGCATTTGAAAATCGGGAGACGAACTATTTGATGGATACTTTTCAGTCATGGTTTCGTGCCGAATGGTGGTCGTGTCTATTACCTCACTCGCTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCAGGATCACTACTCACTACT</pcr_primer_p1>
		<pcr_primer_p2>AACAGAAAAACTCCACTTTAAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCCAGGATCACTACTCACTACTCTATGTGCCACATCCCTTTATCATTCCTGGAGGTAGATTTTTAGAGTTTTATTACTGGTACTTGAATATTTCCATGCTTCGAATCATATTATCTGTTTAGGGATACATTCTGGATATTGAAAGGGCTTCTTTTCTCGGAGATGTACGAAACTGCCCGCGGAGTTATCAAAAATCTAGGATACATGGTTGATAAGTAAGTTCTTCTTCTTAAAGTGGAGTTTTTCTGTT</canonical_amplicon>
		<polymorphic_amplicon>GCCAGGATCACTACTCACTACTCTATGTGCCACATCCCTTTATCATTCCTGGAGGTAGATTTTTRGAGTTTTATTACTGGTACTTGAATATTTCCATGCTTCGAATCATATTATCTGTTTAGGGATACATTCTGGATATTGAAAGGGCTTCTTTTCTCGGAGATGTACGAAACTGCCCGCGGAGTTATCAAAAATCTAGGATACATGGTTGATAAGTAAGTTCTTCTTCTTAAAGTGGAGTTTTTCTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1280</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>839480</contig_pos>
        <strand></strand>
        <context>CCGAGGATTC[T/G]TTGATTTCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATTGATGAGCTTGAAATGATATCATCTCCTTTGGCCGATTCCGAGGATTC</left_flank>
        <right_flank>TTGATTTCTGAAATGTCCACGAGAAATGACGTTGCAAGAGCTTCATGGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACAAAAACTATTTCAGTTGATTTTCAGCCATTTTGACCATTTTCGGAAGTCTGGATCTCTGCTGTCCAATTTCCGATCATTTTGAAAATTATGAAGGGTGTAAAACAAACCTAAATTGAAAACTTTGCATCTATTTAATTTTTTGAAAATTCCTTTTTTTTGGATTTTTGAAAGGCACCTGTTTTTTTTTTCATATTTTCAGTACAAAAATGATGTCTTCCAAAAATCAGCAAATAGCTGAAAAAATAGGAAAATTTCAAAAAATTCTGTAAATGCAAGGTTTACGATCTAGGCCTTACTGGAAACTTAAGTTTGTCAGCCGGGCTCAAGTCTCTTGGAAATGGTCAAAATGAGCAAAAATCAACCGAAAAAAAAGTTTTTGAATATCTTATTGACTGGGACTGTAAGTAATATACTCCATTTCAGAGAAATTTTAATGGAACGAGTCATTGATGAGCTTGAAATGATATCATCTCCTTTGGCCGATTCCGAGGATTCTTTGATTTCTGAAATGTCCACGAGAAATGACGTTGCAAGAGCTTCATGGTTGGAATATCGAGGGATCCGGAGAAGAATTGAAGACGGAAATGAAAGTGATTTTGAAGAAGATGGAGATAGTGATATCTATGGACCACCACCAATACCAGAAAGAGATTATTCCAGGTAGAATCCGAATGTTGTGCAGAGAAAAAGTTACCGTAATCACTGCCCCCAATGCCCCAACTTTGAGTTCATATATCTCGTTTTCTGTAAAAGATATCACAAAGTGACGAAACATTTTTGATGTTATGATAAGCATTTTGTCAGTTGACAACTTTTTTATATTACAAGAACCGAAAAAATTGACTCAAAGTTACAAATTACGGTGGTCGTTCTATTAGAGTGTTTACGGTATTCATTGAAGTTGTTTTTGAGTGAAATTTCAGACCTTCCAAAAACAAGTTCCTGTTTACATTCAGGTAGCACATCCGGGTGAGCCTCGGATCAAAGTTCATTCAA</canonical>
            <polymorphic>TACAAAAACTATTTCAGTTGATTTTCAGCCATTTTGACCATTTTCGGAAGTCTGGATCTCTGCTGTCCAATTTCCGATCATTTTGAAAATTATGAAGGGTGTAAAACAAACCTAAATTGAAAACTTTGCATCTATTTAATTTTTTGAAAATTCCTTTTTTTTGGATTTTTGAAAGGCACCTGTTTTTTTTTTCATATTTTCAGTACAAAAATGATGTCTTCCAAAAATCAGCAAATAGCTGAAAAAATAGGAAAATTTCAAAAAATTCTGTAAATGCAAGGTTTACGATCTAGGCCTTACTGGAAACTTAAGTTTGTCAGCCGGGCTCAAGTCTCTTGGAAATGGTCAAAATGAGCAAAAATCAACCGAAAAAAAAGTTTTTGAATATCTTATTGACTGGGACTGTAAGTAATATACTCCATTTCAGAGAAATTTTAATGGAACGAGTCATTGATGAGCTTGAAATGATATCATCTCCTTTGGCCGATTCCGAGGATTCKTTGATTTCTGAAATGTCCACGAGAAATGACGTTGCAAGAGCTTCATGGTTGGAATATCGAGGGATCCGGAGAAGAATTGAAGACGGAAATGAAAGTGATTTTGAAGAAGATGGAGATAGTGATATCTATGGACCACCACCAATACCAGAAAGAGATTATTCCAGGTAGAATCCGAATGTTGTGCAGAGAAAAAGTTACCGTAATCACTGCCCCCAATGCCCCAACTTTGAGTTCATATATCTCGTTTTCTGTAAAAGATATCACAAAGTGACGAAACATTTTTGATGTTATGATAAGCATTTTGTCAGTTGACAACTTTTTTATATTACAAGAACCGAAAAAATTGACTCAAAGTTACAAATTACGGTGGTCGTTCTATTAGAGTGTTTACGGTATTCATTGAAGTTGTTTTTGAGTGAAATTTCAGACCTTCCAAAAACAAGTTCCTGTTTACATTCAGGTAGCACATCCGGGTGAGCCTCGGATCAAAGTTCATTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTGATGAGCTTGAAATGATA</pcr_primer_p1>
		<pcr_primer_p2>GTAACTTTTTCTCTGCACAACAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTGATGAGCTTGAAATGATATCATCTCCTTTGGCCGATTCCGAGGATTCTTTGATTTCTGAAATGTCCACGAGAAATGACGTTGCAAGAGCTTCATGGTTGGAATATCGAGGGATCCGGAGAAGAATTGAAGACGGAAATGAAAGTGATTTTGAAGAAGATGGAGATAGTGATATCTATGGACCACCACCAATACCAGAAAGAGATTATTCCAGGTAGAATCCGAATGTTGTGCAGAGAAAAAGTTAC</canonical_amplicon>
		<polymorphic_amplicon>CATTGATGAGCTTGAAATGATATCATCTCCTTTGGCCGATTCCGAGGATTCKTTGATTTCTGAAATGTCCACGAGAAATGACGTTGCAAGAGCTTCATGGTTGGAATATCGAGGGATCCGGAGAAGAATTGAAGACGGAAATGAAAGTGATTTTGAAGAAGATGGAGATAGTGATATCTATGGACCACCACCAATACCAGAAAGAGATTATTCCAGGTAGAATCCGAATGTTGTGCAGAGAAAAAGTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1297</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>843607</contig_pos>
        <strand>+</strand>
        <context>CGTCGACATC[C/T]TCATCAGCAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACACCATCCCATCTTTGGATACTGTAGTCTCCTTGAATTCCGTCGACATC</left_flank>
        <right_flank>TCATCAGCACTGAAAAATTATGAGAATTAAAGTAGTCTAAGAATAGTCAC</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGGACGTGACCTTATACTTATTGATTTCTTAATTTATTGCGTTACGTGAATAAAAAATGAAAATAATTTTAAAAGGAAATAGGAAGTGAAAAAATTGGGTCGAAATATTAAAAGTGAAAAATTGAAAGGTGAAAAATAGGAAGTGAAAAGTTGAGAATGAAAAAATATGCCAAAAAATTGGGAAATGAAAAAATGAAGACAGAATATTGGAAGTGAAAAATTAAAAGGGGAAAAACAAGAAGTGTCTCAGAGAATGAGTGTTCAACTTTCGAGCTGAGCAACCTAACAAAAAACATGGAAATTGCAATAAAATGTATAGTTATTATCAGATTCAATAAACAATTTGATTGTTCAACTAGAAAAATGCAAAAAAACATGAAATTTCGATCAATCCGCATGCCAAATAACCATCGAAAAATATCCGAACATACAACTTATCGTTGCTTTGACACCATCCCATCTTTGGATACTGTAGTCTCCTTGAATTCCGTCGACATCCTCATCAGCACTGAAAAATTATGAGAATTAAAGTAGTCTAAGAATAGTCACTAACACTACGCGAAATCTTCTCACTTCGTTTGTTTCAGCAATGGGATTTACCAAATCTTCATCAAAGTTTTCGATAAATGTGGCATGCCTTTTGAAAAACACTCTTAGAAATGAAAATCGGGGGAGCCACAGGCACGCCAGTATCTTAAAAATGAGTTCAAATCTAATTCAGTGAGTCTGGATCTGTAAATGAAGAGTTTGATAGCATCGAAGTTGTCATAAGTGATCCAGTTTGAATTGTCGAATAACAAAACATCTGCTGGTCCCAGTTTTTCTTTGAATCGAAAATTGTCAGAAACGTTGCTAACAAAGTCAGAAGAACGTGCGTTTCTGTAAACTATACAGGGTAATCTTTCACAGAAAATGTTCAACTGAAAATATAATTTCAAATGTTTTGAACCCCATATCGACCTATTTTGGTCAATTTTGATTTTTCATGGGGTACCGCCC</canonical>
            <polymorphic>GGGGACGTGACCTTATACTTATTGATTTCTTAATTTATTGCGTTACGTGAATAAAAAATGAAAATAATTTTAAAAGGAAATAGGAAGTGAAAAAATTGGGTCGAAATATTAAAAGTGAAAAATTGAAAGGTGAAAAATAGGAAGTGAAAAGTTGAGAATGAAAAAATATGCCAAAAAATTGGGAAATGAAAAAATGAAGACAGAATATTGGAAGTGAAAAATTAAAAGGGGAAAAACAAGAAGTGTCTCAGAGAATGAGTGTTCAACTTTCGAGCTGAGCAACCTAACAAAAAACATGGAAATTGCAATAAAATGTATAGTTATTATCAGATTCAATAAACAATTTGATTGTTCAACTAGAAAAATGCAAAAAAACATGAAATTTCGATCAATCCGCATGCCAAATAACCATCGAAAAATATCCGAACATACAACTTATCGTTGCTTTGACACCATCCCATCTTTGGATACTGTAGTCTCCTTGAATTCCGTCGACATCYTCATCAGCACTGAAAAATTATGAGAATTAAAGTAGTCTAAGAATAGTCACTAACACTACGCGAAATCTTCTCACTTCGTTTGTTTCAGCAATGGGATTTACCAAATCTTCATCAAAGTTTTCGATAAATGTGGCATGCCTTTTGAAAAACACTCTTAGAAATGAAAATCGGGGGAGCCACAGGCACGCCAGTATCTTAAAAATGAGTTCAAATCTAATTCAGTGAGTCTGGATCTGTAAATGAAGAGTTTGATAGCATCGAAGTTGTCATAAGTGATCCAGTTTGAATTGTCGAATAACAAAACATCTGCTGGTCCCAGTTTTTCTTTGAATCGAAAATTGTCAGAAACGTTGCTAACAAAGTCAGAAGAACGTGCGTTTCTGTAAACTATACAGGGTAATCTTTCACAGAAAATGTTCAACTGAAAATATAATTTCAAATGTTTTGAACCCCATATCGACCTATTTTGGTCAATTTTGATTTTTCATGGGGTACCGCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCCGAACATACAACTTATCGT</pcr_primer_p1>
		<pcr_primer_p2>CGATTTTCATTTCTAAGAGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATCCGAACATACAACTTATCGTTGCTTTGACACCATCCCATCTTTGGATACTGTAGTCTCCTTGAATTCCGTCGACATCCTCATCAGCACTGAAAAATTATGAGAATTAAAGTAGTCTAAGAATAGTCACTAACACTACGCGAAATCTTCTCACTTCGTTTGTTTCAGCAATGGGATTTACCAAATCTTCATCAAAGTTTTCGATAAATGTGGCATGCCTTTTGAAAAACACTCTTAGAAATGAAAATCG</canonical_amplicon>
		<polymorphic_amplicon>TATCCGAACATACAACTTATCGTTGCTTTGACACCATCCCATCTTTGGATACTGTAGTCTCCTTGAATTCCGTCGACATCYTCATCAGCACTGAAAAATTATGAGAATTAAAGTAGTCTAAGAATAGTCACTAACACTACGCGAAATCTTCTCACTTCGTTTGTTTCAGCAATGGGATTTACCAAATCTTCATCAAAGTTTTCGATAAATGTGGCATGCCTTTTGAAAAACACTCTTAGAAATGAAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1298</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>843522</contig_pos>
        <strand>+</strand>
        <context>ATAACCATCG[A/T]AAAATATCCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGCAAAAAAACATGAAATTTCGATCAATCCGCATGCCAAATAACCATCG</left_flank>
        <right_flank>AAAATATCCGAACATACAACTTATCGTTGCTTTGACACCATCCCATCTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCCGACAATAACATTCAAAGAGTGGGATTTCACAGAGAAATTTTTTTCAATACGTGGGTTTTTCTTCAACGTGGACAGAAGAAGGGGACGTGACCTTATACTTATTGATTTCTTAATTTATTGCGTTACGTGAATAAAAAATGAAAATAATTTTAAAAGGAAATAGGAAGTGAAAAAATTGGGTCGAAATATTAAAAGTGAAAAATTGAAAGGTGAAAAATAGGAAGTGAAAAGTTGAGAATGAAAAAATATGCCAAAAAATTGGGAAATGAAAAAATGAAGACAGAATATTGGAAGTGAAAAATTAAAAGGGGAAAAACAAGAAGTGTCTCAGAGAATGAGTGTTCAACTTTCGAGCTGAGCAACCTAACAAAAAACATGGAAATTGCAATAAAATGTATAGTTATTATCAGATTCAATAAACAATTTGATTGTTCAACTAGAAAAATGCAAAAAAACATGAAATTTCGATCAATCCGCATGCCAAATAACCATCGAAAAATATCCGAACATACAACTTATCGTTGCTTTGACACCATCCCATCTTTGGATACTGTAGTCTCCTTGAATTCCGTCGACATCCTCATCAGCACTGAAAAATTATGAGAATTAAAGTAGTCTAAGAATAGTCACTAACACTACGCGAAATCTTCTCACTTCGTTTGTTTCAGCAATGGGATTTACCAAATCTTCATCAAAGTTTTCGATAAATGTGGCATGCCTTTTGAAAAACACTCTTAGAAATGAAAATCGGGGGAGCCACAGGCACGCCAGTATCTTAAAAATGAGTTCAAATCTAATTCAGTGAGTCTGGATCTGTAAATGAAGAGTTTGATAGCATCGAAGTTGTCATAAGTGATCCAGTTTGAATTGTCGAATAACAAAACATCTGCTGGTCCCAGTTTTTCTTTGAATCGAAAATTGTCAGAAACGTTGCTAACAAAGTCAGAAGAACGTGCGTTTCTGTAAACTATACAGGGTAATCTTTCACAGAAAAT</canonical>
            <polymorphic>TATCCGACAATAACATTCAAAGAGTGGGATTTCACAGAGAAATTTTTTTCAATACGTGGGTTTTTCTTCAACGTGGACAGAAGAAGGGGACGTGACCTTATACTTATTGATTTCTTAATTTATTGCGTTACGTGAATAAAAAATGAAAATAATTTTAAAAGGAAATAGGAAGTGAAAAAATTGGGTCGAAATATTAAAAGTGAAAAATTGAAAGGTGAAAAATAGGAAGTGAAAAGTTGAGAATGAAAAAATATGCCAAAAAATTGGGAAATGAAAAAATGAAGACAGAATATTGGAAGTGAAAAATTAAAAGGGGAAAAACAAGAAGTGTCTCAGAGAATGAGTGTTCAACTTTCGAGCTGAGCAACCTAACAAAAAACATGGAAATTGCAATAAAATGTATAGTTATTATCAGATTCAATAAACAATTTGATTGTTCAACTAGAAAAATGCAAAAAAACATGAAATTTCGATCAATCCGCATGCCAAATAACCATCGWAAAATATCCGAACATACAACTTATCGTTGCTTTGACACCATCCCATCTTTGGATACTGTAGTCTCCTTGAATTCCGTCGACATCCTCATCAGCACTGAAAAATTATGAGAATTAAAGTAGTCTAAGAATAGTCACTAACACTACGCGAAATCTTCTCACTTCGTTTGTTTCAGCAATGGGATTTACCAAATCTTCATCAAAGTTTTCGATAAATGTGGCATGCCTTTTGAAAAACACTCTTAGAAATGAAAATCGGGGGAGCCACAGGCACGCCAGTATCTTAAAAATGAGTTCAAATCTAATTCAGTGAGTCTGGATCTGTAAATGAAGAGTTTGATAGCATCGAAGTTGTCATAAGTGATCCAGTTTGAATTGTCGAATAACAAAACATCTGCTGGTCCCAGTTTTTCTTTGAATCGAAAATTGTCAGAAACGTTGCTAACAAAGTCAGAAGAACGTGCGTTTCTGTAAACTATACAGGGTAATCTTTCACAGAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>187 169 137 129 115 82 80 41 33 27</canonical_bands>
                <polymorphic_bands>187 169 137 129 115 107 82 41 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAAGAAGTGTCTCAGAGAATG</pcr_primer_p1>
		<pcr_primer_p2>CAAGGAGACTACAGTATCCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACAAGAAGTGTCTCAGAGAATGAGTGTTCAACTTTCGAGCTGAGCAACCTAACAAAAAACATGGAAATTGCAATAAAATGTATAGTTATTATCAGATTCAATAAACAATTTGATTGTTCAACTAGAAAAATGCAAAAAAACATGAAATTTCGATCAATCCGCATGCCAAATAACCATCGAAAAATATCCGAACATACAACTTATCGTTGCTTTGACACCATCCCATCTTTGGATACTGTAGTCTCCTTG</canonical_amplicon>
		<polymorphic_amplicon>AACAAGAAGTGTCTCAGAGAATGAGTGTTCAACTTTCGAGCTGAGCAACCTAACAAAAAACATGGAAATTGCAATAAAATGTATAGTTATTATCAGATTCAATAAACAATTTGATTGTTCAACTAGAAAAATGCAAAAAAACATGAAATTTCGATCAATCCGCATGCCAAATAACCATCGWAAAATATCCGAACATACAACTTATCGTTGCTTTGACACCATCCCATCTTTGGATACTGTAGTCTCCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1299</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>911439</contig_pos>
        <strand>+</strand>
        <context>GATCCCTCTC[A/T]ATTAAGCCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGTTTCAAATAATCTCTGAGCTCTAGGCAGTTCTCTCAAGATCCCTCTC</left_flank>
        <right_flank>ATTAAGCCTCATTCCAAATGCGTCATTATTTCTACTTCTCAACAGAATCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTAAGTAATTTCGAAAAGAGAGCACAAAAACAATAGGACTGAAAAGTACAAATGTCCTTTCACTGGTCTTTTCTGAACCAGGAAAGTCTAGATGTACTATACATAAGAAGCTCGTGTGACTCAAAGAAGGATATATAATTTAGAATTAATAAAATTAATTTTGCTATGGTTCACTCTGATCTCTTACTGACCTGTTTCGGGGGAAGCAGAAGTGATGGGTATTGACGACGTTTACGAACAGCGAGTAGGGCGGCAACGGCTACAAGAGCCGCGAGACCGACGGCTCCACCAATTCCAAGATAGAACCATTCTGAAAATATTAGTTCTTTAAATGTTGCTGGTACAGTAATCCTGTCATTTTAATTTCTTGATCATATCTTTTTCTATGAATAATTTTTGATCATCTATTCATATGAATGTTGCTATATCAGGAAACTCTCTCAAAACAAGTTTCAAATAATCTCTGAGCTCTAGGCAGTTCTCTCAAGATCCCTCTCAATTAAGCCTCATTCCAAATGCGTCATTATTTCTACTTCTCAACAGAATCAACTGCCTTAATCATTTTGTGCTTCTCGTTTTTTTTCTTCAGTTGAACGTGCTGAATAATTCGGATGGTCTGCCCGAGAGACTCACGGAAATGACAACAATAACATGTCAAGATGGGAAAACGGATGGACAAAAATGAAAAGAAAAGAATAGAAAAAAAACAAGGAAGAACAAAAGGATTTCCTTGTCCCGGAGCACATATAATTTGTGAATATCGCCGGGATTCGCCGAAACGGAAGTCTAGAAAAAAGAGAGTATGACAGATGAAGAAGAGTTAAGTACGCCTCCGCACGAAGATTATCCTTACCTAAGCCCTTCTGGTCGAATAGGGTTTCCGAAGAAATTGGTCTTATCTCAAGTAAAATCTAAAAGTGATGTCATGTATGGAAAATTATATTTCTAATTTGTGACCGGAAATTTAGTGTCTTGCTTCCTAAAACTTGTTTCTCCTT</canonical>
            <polymorphic>TTTTAAGTAATTTCGAAAAGAGAGCACAAAAACAATAGGACTGAAAAGTACAAATGTCCTTTCACTGGTCTTTTCTGAACCAGGAAAGTCTAGATGTACTATACATAAGAAGCTCGTGTGACTCAAAGAAGGATATATAATTTAGAATTAATAAAATTAATTTTGCTATGGTTCACTCTGATCTCTTACTGACCTGTTTCGGGGGAAGCAGAAGTGATGGGTATTGACGACGTTTACGAACAGCGAGTAGGGCGGCAACGGCTACAAGAGCCGCGAGACCGACGGCTCCACCAATTCCAAGATAGAACCATTCTGAAAATATTAGTTCTTTAAATGTTGCTGGTACAGTAATCCTGTCATTTTAATTTCTTGATCATATCTTTTTCTATGAATAATTTTTGATCATCTATTCATATGAATGTTGCTATATCAGGAAACTCTCTCAAAACAAGTTTCAAATAATCTCTGAGCTCTAGGCAGTTCTCTCAAGATCCCTCTCWATTAAGCCTCATTCCAAATGCGTCATTATTTCTACTTCTCAACAGAATCAACTGCCTTAATCATTTTGTGCTTCTCGTTTTTTTTCTTCAGTTGAACGTGCTGAATAATTCGGATGGTCTGCCCGAGAGACTCACGGAAATGACAACAATAACATGTCAAGATGGGAAAACGGATGGACAAAAATGAAAAGAAAAGAATAGAAAAAAAACAAGGAAGAACAAAAGGATTTCCTTGTCCCGGAGCACATATAATTTGTGAATATCGCCGGGATTCGCCGAAACGGAAGTCTAGAAAAAAGAGAGTATGACAGATGAAGAAGAGTTAAGTACGCCTCCGCACGAAGATTATCCTTACCTAAGCCCTTCTGGTCGAATAGGGTTTCCGAAGAAATTGGTCTTATCTCAAGTAAAATCTAAAAGTGATGTCATGTATGGAAAATTATATTTCTAATTTGTGACCGGAAATTTAGTGTCTTGCTTCCTAAAACTTGTTTCTCCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>144 139 134 130 107 106 71 48 37 30 14 12 9 8 7 4</canonical_bands>
                <polymorphic_bands>213 144 139 134 130 71 48 37 30 14 12 9 8 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTAAATGTTGCTGGTACAGT</pcr_primer_p1>
		<pcr_primer_p2>GAGAAGCACAAAATGATTAAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTTAAATGTTGCTGGTACAGTAATCCTGTCATTTTAATTTCTTGATCATATCTTTTTCTATGAATAATTTTTGATCATCTATTCATATGAATGTTGCTATATCAGGAAACTCTCTCAAAACAAGTTTCAAATAATCTCTGAGCTCTAGGCAGTTCTCTCAAGATCCCTCTCAATTAAGCCTCATTCCAAATGCGTCATTATTTCTACTTCTCAACAGAATCAACTGCCTTAATCATTTTGTGCTTCTC</canonical_amplicon>
		<polymorphic_amplicon>TCTTTAAATGTTGCTGGTACAGTAATCCTGTCATTTTAATTTCTTGATCATATCTTTTTCTATGAATAATTTTTGATCATCTATTCATATGAATGTTGCTATATCAGGAAACTCTCTCAAAACAAGTTTCAAATAATCTCTGAGCTCTAGGCAGTTCTCTCAAGATCCCTCTCWATTAAGCCTCATTCCAAATGCGTCATTATTTCTACTTCTCAACAGAATCAACTGCCTTAATCATTTTGTGCTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1369</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>911805</contig_pos>
        <strand>+</strand>
        <context>CTAAGCCCTT[C/T]TGGTCGAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAGAGTTAAGTACGCCTCCGCACGAAGATTATCCTTACCTAAGCCCTT</left_flank>
        <right_flank>TGGTCGAATAGGGTTTCCGAAGAAATTGGTCTTATCTCAAGTAAAATCTA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTGATCATATCTTTTTCTATGAATAATTTTTGATCATCTATTCATATGAATGTTGCTATATCAGGAAACTCTCTCAAAACAAGTTTCAAATAATCTCTGAGCTCTAGGCAGTTCTCTCAAGATCCCTCTCAATTAAGCCTCATTCCAAATGCGTCATTATTTCTACTTCTCAACAGAATCAACTGCCTTAATCATTTTGTGCTTCTCGTTTTTTTTCTTCAGTTGAACGTGCTGAATAATTCGGATGGTCTGCCCGAGAGACTCACGGAAATGACAACAATAACATGTCAAGATGGGAAAACGGATGGACAAAAATGAAAAGAAAAGAATAGAAAAAAAACAAGGAAGAACAAAAGGATTTCCTTGTCCCGGAGCACATATAATTTGTGAATATCGCCGGGATTCGCCGAAACGGAAGTCTAGAAAAAAGAGAGTATGACAGATGAAGAAGAGTTAAGTACGCCTCCGCACGAAGATTATCCTTACCTAAGCCCTTCTGGTCGAATAGGGTTTCCGAAGAAATTGGTCTTATCTCAAGTAAAATCTAAAAGTGATGTCATGTATGGAAAATTATATTTCTAATTTGTGACCGGAAATTTAGTGTCTTGCTTCCTAAAACTTGTTTCTCCTTTCCTCTAATTCAATATTTAAATCAGACGCAAGTGATGTTAATAGGAGGCTGATGCTTTAAATGAGAAAGGTGTTCGTGATGTCCATTGAACACATTAGCGAGATTTGAGATGACGTCAAAATGTAGTGTCCTAGAATATTCCCAACTTTTTCTCTGCAGGCAAGTCCTCATAAAGAGTGTCAAATTACTGCGGAATCCCAATGACGGTGGCTATTTTGGCATGAGAGAGAAAGACGGATTTCTCTACGATCAATTTCGAGTGAAGTGGTTTTTCAAAAAGGGTAAACAAGTCAATCAGGAGAAAAGGAAATTATGAGGTTCGTATCCTTCTTAGAAATCAAATGGTTCTGTTTTCAAAAAATCAGA</canonical>
            <polymorphic>TTCTTGATCATATCTTTTTCTATGAATAATTTTTGATCATCTATTCATATGAATGTTGCTATATCAGGAAACTCTCTCAAAACAAGTTTCAAATAATCTCTGAGCTCTAGGCAGTTCTCTCAAGATCCCTCTCAATTAAGCCTCATTCCAAATGCGTCATTATTTCTACTTCTCAACAGAATCAACTGCCTTAATCATTTTGTGCTTCTCGTTTTTTTTCTTCAGTTGAACGTGCTGAATAATTCGGATGGTCTGCCCGAGAGACTCACGGAAATGACAACAATAACATGTCAAGATGGGAAAACGGATGGACAAAAATGAAAAGAAAAGAATAGAAAAAAAACAAGGAAGAACAAAAGGATTTCCTTGTCCCGGAGCACATATAATTTGTGAATATCGCCGGGATTCGCCGAAACGGAAGTCTAGAAAAAAGAGAGTATGACAGATGAAGAAGAGTTAAGTACGCCTCCGCACGAAGATTATCCTTACCTAAGCCCTTYTGGTCGAATAGGGTTTCCGAAGAAATTGGTCTTATCTCAAGTAAAATCTAAAAGTGATGTCATGTATGGAAAATTATATTTCTAATTTGTGACCGGAAATTTAGTGTCTTGCTTCCTAAAACTTGTTTCTCCTTTCCTCTAATTCAATATTTAAATCAGACGCAAGTGATGTTAATAGGAGGCTGATGCTTTAAATGAGAAAGGTGTTCGTGATGTCCATTGAACACATTAGCGAGATTTGAGATGACGTCAAAATGTAGTGTCCTAGAATATTCCCAACTTTTTCTCTGCAGGCAAGTCCTCATAAAGAGTGTCAAATTACTGCGGAATCCCAATGACGGTGGCTATTTTGGCATGAGAGAGAAAGACGGATTTCTCTACGATCAATTTCGAGTGAAGTGGTTTTTCAAAAAGGGTAAACAAGTCAATCAGGAGAAAAGGAAATTATGAGGTTCGTATCCTTCTTAGAAATCAAATGGTTCTGTTTTCAAAAAATCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAGAGTATGACAGATGAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>CTATTAACATCACTTGCGTCTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAGAGAGTATGACAGATGAAGAAGAGTTAAGTACGCCTCCGCACGAAGATTATCCTTACCTAAGCCCTTCTGGTCGAATAGGGTTTCCGAAGAAATTGGTCTTATCTCAAGTAAAATCTAAAAGTGATGTCATGTATGGAAAATTATATTTCTAATTTGTGACCGGAAATTTAGTGTCTTGCTTCCTAAAACTTGTTTCTCCTTTCCTCTAATTCAATATTTAAATCAGACGCAAGTGATGTTAATAG</canonical_amplicon>
		<polymorphic_amplicon>AAAGAGAGTATGACAGATGAAGAAGAGTTAAGTACGCCTCCGCACGAAGATTATCCTTACCTAAGCCCTTYTGGTCGAATAGGGTTTCCGAAGAAATTGGTCTTATCTCAAGTAAAATCTAAAAGTGATGTCATGTATGGAAAATTATATTTCTAATTTGTGACCGGAAATTTAGTGTCTTGCTTCCTAAAACTTGTTTCTCCTTTCCTCTAATTCAATATTTAAATCAGACGCAAGTGATGTTAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1370</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>911827</contig_pos>
        <strand>+</strand>
        <context>GGTTTCCGAA[A/G]AAATTGGTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACGAAGATTATCCTTACCTAAGCCCTTCTGGTCGAATAGGGTTTCCGAA</left_flank>
        <right_flank>AAATTGGTCTTATCTCAAGTAAAATCTAAAAGTGATGTCATGTATGGAAA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAATAATTTTTGATCATCTATTCATATGAATGTTGCTATATCAGGAAACTCTCTCAAAACAAGTTTCAAATAATCTCTGAGCTCTAGGCAGTTCTCTCAAGATCCCTCTCAATTAAGCCTCATTCCAAATGCGTCATTATTTCTACTTCTCAACAGAATCAACTGCCTTAATCATTTTGTGCTTCTCGTTTTTTTTCTTCAGTTGAACGTGCTGAATAATTCGGATGGTCTGCCCGAGAGACTCACGGAAATGACAACAATAACATGTCAAGATGGGAAAACGGATGGACAAAAATGAAAAGAAAAGAATAGAAAAAAAACAAGGAAGAACAAAAGGATTTCCTTGTCCCGGAGCACATATAATTTGTGAATATCGCCGGGATTCGCCGAAACGGAAGTCTAGAAAAAAGAGAGTATGACAGATGAAGAAGAGTTAAGTACGCCTCCGCACGAAGATTATCCTTACCTAAGCCCTTCTGGTCGAATAGGGTTTCCGAAGAAATTGGTCTTATCTCAAGTAAAATCTAAAAGTGATGTCATGTATGGAAAATTATATTTCTAATTTGTGACCGGAAATTTAGTGTCTTGCTTCCTAAAACTTGTTTCTCCTTTCCTCTAATTCAATATTTAAATCAGACGCAAGTGATGTTAATAGGAGGCTGATGCTTTAAATGAGAAAGGTGTTCGTGATGTCCATTGAACACATTAGCGAGATTTGAGATGACGTCAAAATGTAGTGTCCTAGAATATTCCCAACTTTTTCTCTGCAGGCAAGTCCTCATAAAGAGTGTCAAATTACTGCGGAATCCCAATGACGGTGGCTATTTTGGCATGAGAGAGAAAGACGGATTTCTCTACGATCAATTTCGAGTGAAGTGGTTTTTCAAAAAGGGTAAACAAGTCAATCAGGAGAAAAGGAAATTATGAGGTTCGTATCCTTCTTAGAAATCAAATGGTTCTGTTTTCAAAAAATCAGAAGAATCAGAAGAGGAGTGTGTA</canonical>
            <polymorphic>TGAATAATTTTTGATCATCTATTCATATGAATGTTGCTATATCAGGAAACTCTCTCAAAACAAGTTTCAAATAATCTCTGAGCTCTAGGCAGTTCTCTCAAGATCCCTCTCAATTAAGCCTCATTCCAAATGCGTCATTATTTCTACTTCTCAACAGAATCAACTGCCTTAATCATTTTGTGCTTCTCGTTTTTTTTCTTCAGTTGAACGTGCTGAATAATTCGGATGGTCTGCCCGAGAGACTCACGGAAATGACAACAATAACATGTCAAGATGGGAAAACGGATGGACAAAAATGAAAAGAAAAGAATAGAAAAAAAACAAGGAAGAACAAAAGGATTTCCTTGTCCCGGAGCACATATAATTTGTGAATATCGCCGGGATTCGCCGAAACGGAAGTCTAGAAAAAAGAGAGTATGACAGATGAAGAAGAGTTAAGTACGCCTCCGCACGAAGATTATCCTTACCTAAGCCCTTCTGGTCGAATAGGGTTTCCGAARAAATTGGTCTTATCTCAAGTAAAATCTAAAAGTGATGTCATGTATGGAAAATTATATTTCTAATTTGTGACCGGAAATTTAGTGTCTTGCTTCCTAAAACTTGTTTCTCCTTTCCTCTAATTCAATATTTAAATCAGACGCAAGTGATGTTAATAGGAGGCTGATGCTTTAAATGAGAAAGGTGTTCGTGATGTCCATTGAACACATTAGCGAGATTTGAGATGACGTCAAAATGTAGTGTCCTAGAATATTCCCAACTTTTTCTCTGCAGGCAAGTCCTCATAAAGAGTGTCAAATTACTGCGGAATCCCAATGACGGTGGCTATTTTGGCATGAGAGAGAAAGACGGATTTCTCTACGATCAATTTCGAGTGAAGTGGTTTTTCAAAAAGGGTAAACAAGTCAATCAGGAGAAAAGGAAATTATGAGGTTCGTATCCTTCTTAGAAATCAAATGGTTCTGTTTTCAAAAAATCAGAAGAATCAGAAGAGGAGTGTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAGAGTATGACAGATGAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>CTATTAACATCACTTGCGTCTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAGAGAGTATGACAGATGAAGAAGAGTTAAGTACGCCTCCGCACGAAGATTATCCTTACCTAAGCCCTTCTGGTCGAATAGGGTTTCCGAAGAAATTGGTCTTATCTCAAGTAAAATCTAAAAGTGATGTCATGTATGGAAAATTATATTTCTAATTTGTGACCGGAAATTTAGTGTCTTGCTTCCTAAAACTTGTTTCTCCTTTCCTCTAATTCAATATTTAAATCAGACGCAAGTGATGTTAATAG</canonical_amplicon>
		<polymorphic_amplicon>AAAGAGAGTATGACAGATGAAGAAGAGTTAAGTACGCCTCCGCACGAAGATTATCCTTACCTAAGCCCTTCTGGTCGAATAGGGTTTCCGAARAAATTGGTCTTATCTCAAGTAAAATCTAAAAGTGATGTCATGTATGGAAAATTATATTTCTAATTTGTGACCGGAAATTTAGTGTCTTGCTTCCTAAAACTTGTTTCTCCTTTCCTCTAATTCAATATTTAAATCAGACGCAAGTGATGTTAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1371</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>913275</contig_pos>
        <strand>+</strand>
        <context>ACCACTTTTC[C/T]TCCTCCACAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGATTGAAGAGAATCGAGACTACGGTAGCTCTGATTTATGACCACTTTTC</left_flank>
        <right_flank>TCCTCCACAGAGGCAAAAGGTTAAGGAAAGAAGAACATTTTATACGAAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTTGCTCTGGGAGCTCTGAACCAGAAAAGAAGAAAAAGAAAAGAAGACAGACGAAGAAAAGTGGAAAGAGAACGACGTGGGAGAGAAGGCAGAGAAGTGGGCGGAGTCAGTTTTGGGGGGGGGGGTAGAAGACGTTGTGTGTCAGCTGAAAAGGATGGGAGGAGAGAGGGAGAAAAAAAAATGGATGACGAATAAGTATGGAGCACTTGTTGCCTCTTTTTCTTTCGCTTCTCTTCTTTTTTCTTAAAATCGGAGCCGCGACGCGTCCCGCTTCGCGCCAGGCGACGTCACAAAAGGGCGATGAGATGGGAGAAGAAGAAGTAGAAGGAGAGGGAGAAGAAGACTGATGGAGCAGAAGGAGGTGTGAAAAGTGCGAGATGAGATTAGAGGAAAAGAAAAAGGATATGGTGTGAAAAAGAAGAAGAAGAAGGGAGAAGTAATTGAAAGGGATTGAAGAGAATCGAGACTACGGTAGCTCTGATTTATGACCACTTTTCCTCCTCCACAGAGGCAAAAGGTTAAGGAAAGAAGAACATTTTATACGAAATGGAAATGAAAGAAAACAGAACAAACAAATCTGGAAATACAGAAACTATAGAATATGCTTAGATCTGAATACCACTCTAATAGAGTGTCACTCAAGCCGTAAACATTTAACACATATATCTCATTTCCTTTGAAAGATATCAAAAAGTAGTCAACTGACAAAATATTGCATTAAAAATATTGTAGTATTATGATAAACATTCTGTCAGTTGACCACTTTTTGATACCTTTCACAAGAAATGAGATAAAATTGATGGTTTGAGTGGCACACTATTAGAGTGATTACGGTAGTCTTCGATTTTCATTCCCGGTATTACACGAAACATGAGATACTGAAATTGGAGACGTTCGAACTTAGAAGGTCATGAATCAGCAAAAATCTGCTCCTTTTCTTAAATGTTCTAACAATGTAGGTCTTGAGAAATTAGCTTAGATGTCAGCTAACATTCCGT</canonical>
            <polymorphic>AGCTTGCTCTGGGAGCTCTGAACCAGAAAAGAAGAAAAAGAAAAGAAGACAGACGAAGAAAAGTGGAAAGAGAACGACGTGGGAGAGAAGGCAGAGAAGTGGGCGGAGTCAGTTTTGGGGGGGGGGGTAGAAGACGTTGTGTGTCAGCTGAAAAGGATGGGAGGAGAGAGGGAGAAAAAAAAATGGATGACGAATAAGTATGGAGCACTTGTTGCCTCTTTTTCTTTCGCTTCTCTTCTTTTTTCTTAAAATCGGAGCCGCGACGCGTCCCGCTTCGCGCCAGGCGACGTCACAAAAGGGCGATGAGATGGGAGAAGAAGAAGTAGAAGGAGAGGGAGAAGAAGACTGATGGAGCAGAAGGAGGTGTGAAAAGTGCGAGATGAGATTAGAGGAAAAGAAAAAGGATATGGTGTGAAAAAGAAGAAGAAGAAGGGAGAAGTAATTGAAAGGGATTGAAGAGAATCGAGACTACGGTAGCTCTGATTTATGACCACTTTTCYTCCTCCACAGAGGCAAAAGGTTAAGGAAAGAAGAACATTTTATACGAAATGGAAATGAAAGAAAACAGAACAAACAAATCTGGAAATACAGAAACTATAGAATATGCTTAGATCTGAATACCACTCTAATAGAGTGTCACTCAAGCCGTAAACATTTAACACATATATCTCATTTCCTTTGAAAGATATCAAAAAGTAGTCAACTGACAAAATATTGCATTAAAAATATTGTAGTATTATGATAAACATTCTGTCAGTTGACCACTTTTTGATACCTTTCACAAGAAATGAGATAAAATTGATGGTTTGAGTGGCACACTATTAGAGTGATTACGGTAGTCTTCGATTTTCATTCCCGGTATTACACGAAACATGAGATACTGAAATTGGAGACGTTCGAACTTAGAAGGTCATGAATCAGCAAAAATCTGCTCCTTTTCTTAAATGTTCTAACAATGTAGGTCTTGAGAAATTAGCTTAGATGTCAGCTAACATTCCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAGTGCGAGATGAGATTAG</pcr_primer_p1>
		<pcr_primer_p2>TTTCTGTATTTCCAGATTTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>GAAAAGTGCGAGATGAGATTAGAGGAAAAGAAAAAGGATATGGTGTGAAAAAGAAGAAGAAGAAGGGAGAAGTAATTGAAAGGGATTGAAGAGAATCGAGACTACGGTAGCTCTGATTTATGACCACTTTTCCTCCTCCACAGAGGCAAAAGGTTAAGGAAAGAAGAACATTTTATACGAAATGGAAATGAAAGAAAACAGAACAAACAAATCTGGAAATACAGAAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAGTGCGAGATGAGATTAGAGGAAAAGAAAAAGGATATGGTGTGAAAAAGAAGAAGAAGAAGGGAGAAGTAATTGAAAGGGATTGAAGAGAATCGAGACTACGGTAGCTCTGATTTATGACCACTTTTCYTCCTCCACAGAGGCAAAAGGTTAAGGAAAGAAGAACATTTTATACGAAATGGAAATGAAAGAAAACAGAACAAACAAATCTGGAAATACAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1372</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>923914</contig_pos>
        <strand>+</strand>
        <context>ATATCAAAGC[C/T]AAAACTATAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTACAGTAACCCTATACCCTTACTTCGGTGTTCGAAAATATATCAAAGC</left_flank>
        <right_flank>AAAACTATACCAAAACTACCGTAATCCTTCAATTATTTCATGTTAGCTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTGGAACAACCGATCCTTTTGCATTATGGTGATGGTGTTTCTTTGTTTTCTTATCTTTTCTGTAACTCTCTCTGAATGATTCAGGGGATTCAGATGATGAAACCTACGAGGACATTTTCCTAGTCACTTAGCTTCTTTGATAAGATCAAAGTACAAGATGTGAAATAAACTGTCTTTGTGATAGAGGCTCAGCAATTCGATAGGAATCTCTCCAAATTAAAGGCACGTTGCACGTTGCGTATTCAGTTCTTGGTAAAAAAAACAAAATAGGAATTCTAGAAAAATATTGGGTCAGAGTGTATGGAAGGAAAATAATAATTATTCTACGAAACTGTGTCTTTTGTTTGATTTTTAACAAAGAATATGAGTTAATGAAAGCTAAAGCTTTGATAATTCGATGGAGAAAAACTTTTATACGGAAATTTGCTTACTGATTTTTTCGGGTTTTCCTACAGTAACCCTATACCCTTACTTCGGTGTTCGAAAATATATCAAAGCTAAAACTATACCAAAACTACCGTAATCCTTCAATTATTTCATGTTAGCTGAAACATATCTCCTCCTTTTCTCGTTTAAAACATTTTATTCGAAATCTTATAAGATGACTACGTTTTCAGGAGACATCATAGTGTGGAACTTTGGGCGAAGTTCCCACATTCCCGGGAGAAGAAAAAATACAGTAATCCATAAGTGGAACCTCTATGTGCACGATGACCTTTTTCTGCTAGAAATTCATTTTATAAAGCAATAATATTTATTCATGAACCCGCAAAAATTATTGATGCCCGGGATACACCGGAAAACGGATAACATGAAAGTGGGTATGGGAGAAAAGGTGAACTACAGTGAGAATATTACAAAAAAGAAAACCGAATGGGAATATTGGGAAGATGAATATGGTGGATGAAATTTTGATAAAATAAAGTTCGAGAAGAAATTAGATAAAAAATGTTTAACTAATGGTTGGCAATAGATTCTTCCAAATTGATGAAGAAGTTC</canonical>
            <polymorphic>GGTGGAACAACCGATCCTTTTGCATTATGGTGATGGTGTTTCTTTGTTTTCTTATCTTTTCTGTAACTCTCTCTGAATGATTCAGGGGATTCAGATGATGAAACCTACGAGGACATTTTCCTAGTCACTTAGCTTCTTTGATAAGATCAAAGTACAAGATGTGAAATAAACTGTCTTTGTGATAGAGGCTCAGCAATTCGATAGGAATCTCTCCAAATTAAAGGCACGTTGCACGTTGCGTATTCAGTTCTTGGTAAAAAAAACAAAATAGGAATTCTAGAAAAATATTGGGTCAGAGTGTATGGAAGGAAAATAATAATTATTCTACGAAACTGTGTCTTTTGTTTGATTTTTAACAAAGAATATGAGTTAATGAAAGCTAAAGCTTTGATAATTCGATGGAGAAAAACTTTTATACGGAAATTTGCTTACTGATTTTTTCGGGTTTTCCTACAGTAACCCTATACCCTTACTTCGGTGTTCGAAAATATATCAAAGCYAAAACTATACCAAAACTACCGTAATCCTTCAATTATTTCATGTTAGCTGAAACATATCTCCTCCTTTTCTCGTTTAAAACATTTTATTCGAAATCTTATAAGATGACTACGTTTTCAGGAGACATCATAGTGTGGAACTTTGGGCGAAGTTCCCACATTCCCGGGAGAAGAAAAAATACAGTAATCCATAAGTGGAACCTCTATGTGCACGATGACCTTTTTCTGCTAGAAATTCATTTTATAAAGCAATAATATTTATTCATGAACCCGCAAAAATTATTGATGCCCGGGATACACCGGAAAACGGATAACATGAAAGTGGGTATGGGAGAAAAGGTGAACTACAGTGAGAATATTACAAAAAAGAAAACCGAATGGGAATATTGGGAAGATGAATATGGTGGATGAAATTTTGATAAAATAAAGTTCGAGAAGAAATTAGATAAAAAATGTTTAACTAATGGTTGGCAATAGATTCTTCCAAATTGATGAAGAAGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>454 247 132 113 48 6</canonical_bands>
                <polymorphic_bands>454 247 161 132 6</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>454 191 132 113 56 48 6</canonical_bands>
                <polymorphic_bands>454 191 161 132 56 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTACGAAACTGTGTCTTTTG</pcr_primer_p1>
		<pcr_primer_p2>AGAAAAGGAGGAGATATGTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTCTACGAAACTGTGTCTTTTGTTTGATTTTTAACAAAGAATATGAGTTAATGAAAGCTAAAGCTTTGATAATTCGATGGAGAAAAACTTTTATACGGAAATTTGCTTACTGATTTTTTCGGGTTTTCCTACAGTAACCCTATACCCTTACTTCGGTGTTCGAAAATATATCAAAGCTAAAACTATACCAAAACTACCGTAATCCTTCAATTATTTCATGTTAGCTGAAACATATCTCCTCCTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>ATTCTACGAAACTGTGTCTTTTGTTTGATTTTTAACAAAGAATATGAGTTAATGAAAGCTAAAGCTTTGATAATTCGATGGAGAAAAACTTTTATACGGAAATTTGCTTACTGATTTTTTCGGGTTTTCCTACAGTAACCCTATACCCTTACTTCGGTGTTCGAAAATATATCAAAGCYAAAACTATACCAAAACTACCGTAATCCTTCAATTATTTCATGTTAGCTGAAACATATCTCCTCCTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1373</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>925563</contig_pos>
        <strand>+</strand>
        <context>TGGAAAGTAG[C/T]GAACGTTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTCTGAAAATCAATAGACAATTCAGTAATGGCTCCTGTGTGGAAAGTAG</left_flank>
        <right_flank>GAACGTTTGATTGGCAGAAAGTCAATAGAGGCAACTAGGTTGACCAGGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGTTTTCTAACTCTTTCTGCGAATAACAATTCGAAAGTCAGAAATTAAAAAAAAACAGTAAAACCTGTAACAGAAGAGCGTCCAAACTTTCAACTTCGAGCTCAACTTTCTCGGTTCCCATGAGAGATTTCAAAATTTTGTTGACAGATTTTTAACATCTCTTATAGAAATTGAGATAATTGATCTCAAAGTGTGAGTATAGGGAGCCTTCTATTTATTAGACTGTTACGGTATGTCGCAGAAAATATTCTTGAACAAAAAGACCTAATAGAGAAATACTAAAAATTCTTTTAAATGAGAGAGTAGCTTGGAAAAGAGAAAACAGTAAAACAGAGAAACTAGTCGCCTCGCCTCAAGATTTTGAAACGACAGACATTTCGAAATCTTCAGGTAGACTAAGTCTGAGTAGGTGACTCTCAATTGTTTTCTTCTCTAGGATAGAAGAATGTCTGAAAATCAATAGACAATTCAGTAATGGCTCCTGTGTGGAAAGTAGTGAACGTTTGATTGGCAGAAAGTCAATAGAGGCAACTAGGTTGACCAGGGACCTGTTGTATTACTGTGAATCAATGCATGACAAAGAAGATTAGGAAATTATGGAAAAAGTCTTATCAGAATAGAGTAATTATAGAGCTCAATAGACAAAAAGTAACTTTGAAAAATGAATGGTCAAGCCTCCAGGCTAAATGATTTTTGAAACACTATAATAGAAGGCTACCCAAACCGCCAACTTTGAGATCATATTTAGGCGCCGCAATGAAAGGGGGCGGGGCGATCAAATTGTTCTCCCCTTTTCAGAAGTCCATCTTTGAAGTCTTGTATCGGGCGTTAGAAACTCATTATTTTTAGGGTTAAAACTTGTCCCCATCTAATCGACTTTCGACTTTTTCGACTTCTAATCGACTTTGGGAATGGACTTCTATAAGAGTGGAGAAAAGAATCCAACAATAAAAATAAGAAAATATCTATTTTGAAAATTATTTTGTGGTGCCTAATC</canonical>
            <polymorphic>TTCTGTTTTCTAACTCTTTCTGCGAATAACAATTCGAAAGTCAGAAATTAAAAAAAAACAGTAAAACCTGTAACAGAAGAGCGTCCAAACTTTCAACTTCGAGCTCAACTTTCTCGGTTCCCATGAGAGATTTCAAAATTTTGTTGACAGATTTTTAACATCTCTTATAGAAATTGAGATAATTGATCTCAAAGTGTGAGTATAGGGAGCCTTCTATTTATTAGACTGTTACGGTATGTCGCAGAAAATATTCTTGAACAAAAAGACCTAATAGAGAAATACTAAAAATTCTTTTAAATGAGAGAGTAGCTTGGAAAAGAGAAAACAGTAAAACAGAGAAACTAGTCGCCTCGCCTCAAGATTTTGAAACGACAGACATTTCGAAATCTTCAGGTAGACTAAGTCTGAGTAGGTGACTCTCAATTGTTTTCTTCTCTAGGATAGAAGAATGTCTGAAAATCAATAGACAATTCAGTAATGGCTCCTGTGTGGAAAGTAGYGAACGTTTGATTGGCAGAAAGTCAATAGAGGCAACTAGGTTGACCAGGGACCTGTTGTATTACTGTGAATCAATGCATGACAAAGAAGATTAGGAAATTATGGAAAAAGTCTTATCAGAATAGAGTAATTATAGAGCTCAATAGACAAAAAGTAACTTTGAAAAATGAATGGTCAAGCCTCCAGGCTAAATGATTTTTGAAACACTATAATAGAAGGCTACCCAAACCGCCAACTTTGAGATCATATTTAGGCGCCGCAATGAAAGGGGGCGGGGCGATCAAATTGTTCTCCCCTTTTCAGAAGTCCATCTTTGAAGTCTTGTATCGGGCGTTAGAAACTCATTATTTTTAGGGTTAAAACTTGTCCCCATCTAATCGACTTTCGACTTTTTCGACTTCTAATCGACTTTGGGAATGGACTTCTATAAGAGTGGAGAAAAGAATCCAACAATAAAAATAAGAAAATATCTATTTTGAAAATTATTTTGTGGTGCCTAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>229 217 196 137 74 66 57 10 7 3 2 2</canonical_bands>
                <polymorphic_bands>229 217 196 137 76 74 57 7 3 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>459 251 145 105 40</canonical_bands>
                <polymorphic_bands>459 251 145 145</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATTTTGAAACGACAGACATT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCCATAATTTCCTAATCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGATTTTGAAACGACAGACATTTCGAAATCTTCAGGTAGACTAAGTCTGAGTAGGTGACTCTCAATTGTTTTCTTCTCTAGGATAGAAGAATGTCTGAAAATCAATAGACAATTCAGTAATGGCTCCTGTGTGGAAAGTAGTGAACGTTTGATTGGCAGAAAGTCAATAGAGGCAACTAGGTTGACCAGGGACCTGTTGTATTACTGTGAATCAATGCATGACAAAGAAGATTAGGAAATTATGGAAAA</canonical_amplicon>
		<polymorphic_amplicon>AGATTTTGAAACGACAGACATTTCGAAATCTTCAGGTAGACTAAGTCTGAGTAGGTGACTCTCAATTGTTTTCTTCTCTAGGATAGAAGAATGTCTGAAAATCAATAGACAATTCAGTAATGGCTCCTGTGTGGAAAGTAGYGAACGTTTGATTGGCAGAAAGTCAATAGAGGCAACTAGGTTGACCAGGGACCTGTTGTATTACTGTGAATCAATGCATGACAAAGAAGATTAGGAAATTATGGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1381</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>33838</contig_pos>
        <strand>+</strand>
        <context>TGTTTTTTCT[A/C]MYAAAAAYCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGATGGAACTGAGATTTTTCTCTTTTTGAAGCTTTTTCAGTGTTTTTTCT</left_flank>
        <right_flank>ATAAAAACCCTTACTCAAGCACAAATTTCTCGTCGCATCATGGGACAAAA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAATTTTTTCAAATTTGAGGACTTTTCAATTTTCAAAAAATTGAATCCAAGTAACTTAAGAATCTAGAAATGTGAAGATTTACAAAAAAAACGAAAAATTGATTTTTTCTTCGATTTTTCGCTAAATGTTCAAACCTTTTTAGGGTTTTCAGCTATTTTCAAAGATTCTTTTTCGATTTTTCGAATTTTTTGTCTGAAATTTGATGGGACGGTGTTCGAGAAGATTGCTGTAGATTACTGTAGAAAGCCCTTGTATCTTNNNNNNNNNNCCCCATCGAATTTCAGACAAAAAAAAACCGGAAAAATCGAAAACGAATATTCAAAGATAGCTGAAACCCCTAAAAAGGTCTAGAAAAAAAAATCGGGGAAAAGGCAATTATTTTTTTCTCGGAAAATCGCCAGTTTCAAAAAAAAACCATTCGAGAACCTTCCAGAGTTTCCAGAAATGGATGGAACTGAGATTTTTCTCTTTTTGAAGCTTTTTCAGTGTTTTTTCTAATAAAAACCCTTACTCAAGCACAAATTTCTCGTCGCATCATGGGACAAAATTTTGGCTGGAGAATCGAATAAACACAGCATATTAAACCAAGTCCGGTAAATAAATGCACTTCATTCTCGTCTTCGTCAGCTGTCATTGGCACATTTTCAAACGGAATCACACTTTCGTCGCCTGGAATTTTTAATTTTAGGCTCCGCCCACTTTCAGCGAAAATCTTACCAATATCAATTTTCAAATAATCGTCTCCATACATTTTTCGACACACCAACACTGATAATCCCAGAATTTTCTTTGCCCAACATTCGATGATAGGGACCTGGAAAACAATATTTTTGTTGGAATTCGAGGATTTTATGAAAAATGTGCCGTAAAACCTGTATTAGAAGGGCCTGCCCTTCTATTGTTCCAAGGTACCTGCGGAGGGCCCTTCTATTACAGGGGCCTTTCAATTAGAGGGGGCCCTTCTATGTTTTCGGGCCAGTTTTTTCCGAAATTTTGC</canonical>
            <polymorphic>AGAAATTTTTTCAAATTTGAGGACTTTTCAATTTTCAAAAAATTGAATCCAAGTAACTTAAGAATCTAGAAATGTGAAGATTTACAAAAAAAACGAAAAATTGATTTTTTCTTCGATTTTTCGCTAAATGTTCAAACCTTTTTAGGGTTTTCAGCTATTTTCAAAGATTCTTTTTCGATTTTTCGAATTTTTTGTCTGAAATTTGATGGGACGGTGTTCGAGAAGATTGCTGTAGATTACTGTAGAAAGCCCTTGTATCTTNNNNNNNNNNCCCCATCGAATTTCAGACAAAAAAAAACCGGAAAAATCGAAAACGAATATTCAAAGATAGCTGAAACCCCTAAAAAGGTCTAGAAAAAAAAATCGGGGAAAAGGCAATTATTTTTTTCTCGGAAAATCGCCAGTTTCAAAAAAAAACCATTCGAGAACCTTCCAGAGTTTCCAGAAATGGATGGAACTGAGATTTTTCTCTTTTTGAAGCTTTTTCAGTGTTTTTTCTMATAAAAACCCTTACTCAAGCACAAATTTCTCGTCGCATCATGGGACAAAATTTTGGCTGGAGAATCGAATAAACACAGCATATTAAACCAAGTCCGGTAAATAAATGCACTTCATTCTCGTCTTCGTCAGCTGTCATTGGCACATTTTCAAACGGAATCACACTTTCGTCGCCTGGAATTTTTAATTTTAGGCTCCGCCCACTTTCAGCGAAAATCTTACCAATATCAATTTTCAAATAATCGTCTCCATACATTTTTCGACACACCAACACTGATAATCCCAGAATTTTCTTTGCCCAACATTCGATGATAGGGACCTGGAAAACAATATTTTTGTTGGAATTCGAGGATTTTATGAAAAATGTGCCGTAAAACCTGTATTAGAAGGGCCTGCCCTTCTATTGTTCCAAGGTACCTGCGGAGGGCCCTTCTATTACAGGGGCCTTTCAATTAGAGGGGGCCCTTCTATGTTTTCGGGCCAGTTTTTTCCGAAATTTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAGAAATGTGAAGATTTACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TATGCTGTGTTTATTCGATTCTC</pcr_primer_p2>
		<pcr_amplicon_size>518</pcr_amplicon_size>
		<canonical_amplicon>TCTAGAAATGTGAAGATTTACAAAAAAAACGAAAAATTGATTTTTTCTTCGATTTTTCGCTAAATGTTCAAACCTTTTTAGGGTTTTCAGCTATTTTCAAAGATTCTTTTTCGATTTTTCGAATTTTTTGTCTGAAATTTGATGGGACGGTGTTCGAGAAGATTGCTGTAGATTACTGTAGAAAGCCCTTGTATCTTNNNNNNNNNNCCCCATCGAATTTCAGACAAAAAAAAACCGGAAAAATCGAAAACGAATATTCAAAGATAGCTGAAACCCCTAAAAAGGTCTAGAAAAAAAAATCGGGGAAAAGGCAATTATTTTTTTCTCGGAAAATCGCCAGTTTCAAAAAAAAACCATTCGAGAACCTTCCAGAGTTTCCAGAAATGGATGGAACTGAGATTTTTCTCTTTTTGAAGCTTTTTCAGTGTTTTTTCTAATAAAAACCCTTACTCAAGCACAAATTTCTCGTCGCATCATGGGACAAAATTTTGGCTGGAGAATCGAATAAACACAGCATA</canonical_amplicon>
		<polymorphic_amplicon>TCTAGAAATGTGAAGATTTACAAAAAAAACGAAAAATTGATTTTTTCTTCGATTTTTCGCTAAATGTTCAAACCTTTTTAGGGTTTTCAGCTATTTTCAAAGATTCTTTTTCGATTTTTCGAATTTTTTGTCTGAAATTTGATGGGACGGTGTTCGAGAAGATTGCTGTAGATTACTGTAGAAAGCCCTTGTATCTTNNNNNNNNNNCCCCATCGAATTTCAGACAAAAAAAAACCGGAAAAATCGAAAACGAATATTCAAAGATAGCTGAAACCCCTAAAAAGGTCTAGAAAAAAAAATCGGGGAAAAGGCAATTATTTTTTTCTCGGAAAATCGCCAGTTTCAAAAAAAAACCATTCGAGAACCTTCCAGAGTTTCCAGAAATGGATGGAACTGAGATTTTTCTCTTTTTGAAGCTTTTTCAGTGTTTTTTCTMATAAAAACCCTTACTCAAGCACAAATTTCTCGTCGCATCATGGGACAAAATTTTGGCTGGAGAATCGAATAAACACAGCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1382</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>33839</contig_pos>
        <strand>+</strand>
        <context>GTTTTTTCTM[A/C]YAAAAAYCCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATGGAACTGAGATTTTTCTCTTTTTGAAGCTTTTTCAGTGTTTTTTCTA</left_flank>
        <right_flank>TAAAAACCCTTACTCAAGCACAAATTTCTCGTCGCATCATGGGACAAAAT</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATTTTTTCAAATTTGAGGACTTTTCAATTTTCAAAAAATTGAATCCAAGTAACTTAAGAATCTAGAAATGTGAAGATTTACAAAAAAAACGAAAAATTGATTTTTTCTTCGATTTTTCGCTAAATGTTCAAACCTTTTTAGGGTTTTCAGCTATTTTCAAAGATTCTTTTTCGATTTTTCGAATTTTTTGTCTGAAATTTGATGGGACGGTGTTCGAGAAGATTGCTGTAGATTACTGTAGAAAGCCCTTGTATCTTNNNNNNNNNNCCCCATCGAATTTCAGACAAAAAAAAACCGGAAAAATCGAAAACGAATATTCAAAGATAGCTGAAACCCCTAAAAAGGTCTAGAAAAAAAAATCGGGGAAAAGGCAATTATTTTTTTCTCGGAAAATCGCCAGTTTCAAAAAAAAACCATTCGAGAACCTTCCAGAGTTTCCAGAAATGGATGGAACTGAGATTTTTCTCTTTTTGAAGCTTTTTCAGTGTTTTTTCTAATAAAAACCCTTACTCAAGCACAAATTTCTCGTCGCATCATGGGACAAAATTTTGGCTGGAGAATCGAATAAACACAGCATATTAAACCAAGTCCGGTAAATAAATGCACTTCATTCTCGTCTTCGTCAGCTGTCATTGGCACATTTTCAAACGGAATCACACTTTCGTCGCCTGGAATTTTTAATTTTAGGCTCCGCCCACTTTCAGCGAAAATCTTACCAATATCAATTTTCAAATAATCGTCTCCATACATTTTTCGACACACCAACACTGATAATCCCAGAATTTTCTTTGCCCAACATTCGATGATAGGGACCTGGAAAACAATATTTTTGTTGGAATTCGAGGATTTTATGAAAAATGTGCCGTAAAACCTGTATTAGAAGGGCCTGCCCTTCTATTGTTCCAAGGTACCTGCGGAGGGCCCTTCTATTACAGGGGCCTTTCAATTAGAGGGGGCCCTTCTATGTTTTCGGGCCAGTTTTTTCCGAAATTTTGCA</canonical>
            <polymorphic>GAAATTTTTTCAAATTTGAGGACTTTTCAATTTTCAAAAAATTGAATCCAAGTAACTTAAGAATCTAGAAATGTGAAGATTTACAAAAAAAACGAAAAATTGATTTTTTCTTCGATTTTTCGCTAAATGTTCAAACCTTTTTAGGGTTTTCAGCTATTTTCAAAGATTCTTTTTCGATTTTTCGAATTTTTTGTCTGAAATTTGATGGGACGGTGTTCGAGAAGATTGCTGTAGATTACTGTAGAAAGCCCTTGTATCTTNNNNNNNNNNCCCCATCGAATTTCAGACAAAAAAAAACCGGAAAAATCGAAAACGAATATTCAAAGATAGCTGAAACCCCTAAAAAGGTCTAGAAAAAAAAATCGGGGAAAAGGCAATTATTTTTTTCTCGGAAAATCGCCAGTTTCAAAAAAAAACCATTCGAGAACCTTCCAGAGTTTCCAGAAATGGATGGAACTGAGATTTTTCTCTTTTTGAAGCTTTTTCAGTGTTTTTTCTAMTAAAAACCCTTACTCAAGCACAAATTTCTCGTCGCATCATGGGACAAAATTTTGGCTGGAGAATCGAATAAACACAGCATATTAAACCAAGTCCGGTAAATAAATGCACTTCATTCTCGTCTTCGTCAGCTGTCATTGGCACATTTTCAAACGGAATCACACTTTCGTCGCCTGGAATTTTTAATTTTAGGCTCCGCCCACTTTCAGCGAAAATCTTACCAATATCAATTTTCAAATAATCGTCTCCATACATTTTTCGACACACCAACACTGATAATCCCAGAATTTTCTTTGCCCAACATTCGATGATAGGGACCTGGAAAACAATATTTTTGTTGGAATTCGAGGATTTTATGAAAAATGTGCCGTAAAACCTGTATTAGAAGGGCCTGCCCTTCTATTGTTCCAAGGTACCTGCGGAGGGCCCTTCTATTACAGGGGCCTTTCAATTAGAGGGGGCCCTTCTATGTTTTCGGGCCAGTTTTTTCCGAAATTTTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAGAAATGTGAAGATTTACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TATGCTGTGTTTATTCGATTCTC</pcr_primer_p2>
		<pcr_amplicon_size>518</pcr_amplicon_size>
		<canonical_amplicon>TCTAGAAATGTGAAGATTTACAAAAAAAACGAAAAATTGATTTTTTCTTCGATTTTTCGCTAAATGTTCAAACCTTTTTAGGGTTTTCAGCTATTTTCAAAGATTCTTTTTCGATTTTTCGAATTTTTTGTCTGAAATTTGATGGGACGGTGTTCGAGAAGATTGCTGTAGATTACTGTAGAAAGCCCTTGTATCTTNNNNNNNNNNCCCCATCGAATTTCAGACAAAAAAAAACCGGAAAAATCGAAAACGAATATTCAAAGATAGCTGAAACCCCTAAAAAGGTCTAGAAAAAAAAATCGGGGAAAAGGCAATTATTTTTTTCTCGGAAAATCGCCAGTTTCAAAAAAAAACCATTCGAGAACCTTCCAGAGTTTCCAGAAATGGATGGAACTGAGATTTTTCTCTTTTTGAAGCTTTTTCAGTGTTTTTTCTAATAAAAACCCTTACTCAAGCACAAATTTCTCGTCGCATCATGGGACAAAATTTTGGCTGGAGAATCGAATAAACACAGCATA</canonical_amplicon>
		<polymorphic_amplicon>TCTAGAAATGTGAAGATTTACAAAAAAAACGAAAAATTGATTTTTTCTTCGATTTTTCGCTAAATGTTCAAACCTTTTTAGGGTTTTCAGCTATTTTCAAAGATTCTTTTTCGATTTTTCGAATTTTTTGTCTGAAATTTGATGGGACGGTGTTCGAGAAGATTGCTGTAGATTACTGTAGAAAGCCCTTGTATCTTNNNNNNNNNNCCCCATCGAATTTCAGACAAAAAAAAACCGGAAAAATCGAAAACGAATATTCAAAGATAGCTGAAACCCCTAAAAAGGTCTAGAAAAAAAAATCGGGGAAAAGGCAATTATTTTTTTCTCGGAAAATCGCCAGTTTCAAAAAAAAACCATTCGAGAACCTTCCAGAGTTTCCAGAAATGGATGGAACTGAGATTTTTCTCTTTTTGAAGCTTTTTCAGTGTTTTTTCTAMTAAAAACCCTTACTCAAGCACAAATTTCTCGTCGCATCATGGGACAAAATTTTGGCTGGAGAATCGAATAAACACAGCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1383</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>33840</contig_pos>
        <strand>+</strand>
        <context>TTTTTTCTMM[C/T]AAAAAYCCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGGAACTGAGATTTTTCTCTTTTTGAAGCTTTTTCAGTGTTTTTTCTAA</left_flank>
        <right_flank>AAAAACCCTTACTCAAGCACAAATTTCTCGTCGCATCATGGGACAAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTTTTCAAATTTGAGGACTTTTCAATTTTCAAAAAATTGAATCCAAGTAACTTAAGAATCTAGAAATGTGAAGATTTACAAAAAAAACGAAAAATTGATTTTTTCTTCGATTTTTCGCTAAATGTTCAAACCTTTTTAGGGTTTTCAGCTATTTTCAAAGATTCTTTTTCGATTTTTCGAATTTTTTGTCTGAAATTTGATGGGACGGTGTTCGAGAAGATTGCTGTAGATTACTGTAGAAAGCCCTTGTATCTTNNNNNNNNNNCCCCATCGAATTTCAGACAAAAAAAAACCGGAAAAATCGAAAACGAATATTCAAAGATAGCTGAAACCCCTAAAAAGGTCTAGAAAAAAAAATCGGGGAAAAGGCAATTATTTTTTTCTCGGAAAATCGCCAGTTTCAAAAAAAAACCATTCGAGAACCTTCCAGAGTTTCCAGAAATGGATGGAACTGAGATTTTTCTCTTTTTGAAGCTTTTTCAGTGTTTTTTCTAATAAAAACCCTTACTCAAGCACAAATTTCTCGTCGCATCATGGGACAAAATTTTGGCTGGAGAATCGAATAAACACAGCATATTAAACCAAGTCCGGTAAATAAATGCACTTCATTCTCGTCTTCGTCAGCTGTCATTGGCACATTTTCAAACGGAATCACACTTTCGTCGCCTGGAATTTTTAATTTTAGGCTCCGCCCACTTTCAGCGAAAATCTTACCAATATCAATTTTCAAATAATCGTCTCCATACATTTTTCGACACACCAACACTGATAATCCCAGAATTTTCTTTGCCCAACATTCGATGATAGGGACCTGGAAAACAATATTTTTGTTGGAATTCGAGGATTTTATGAAAAATGTGCCGTAAAACCTGTATTAGAAGGGCCTGCCCTTCTATTGTTCCAAGGTACCTGCGGAGGGCCCTTCTATTACAGGGGCCTTTCAATTAGAGGGGGCCCTTCTATGTTTTCGGGCCAGTTTTTTCCGAAATTTTGCAA</canonical>
            <polymorphic>AAATTTTTTCAAATTTGAGGACTTTTCAATTTTCAAAAAATTGAATCCAAGTAACTTAAGAATCTAGAAATGTGAAGATTTACAAAAAAAACGAAAAATTGATTTTTTCTTCGATTTTTCGCTAAATGTTCAAACCTTTTTAGGGTTTTCAGCTATTTTCAAAGATTCTTTTTCGATTTTTCGAATTTTTTGTCTGAAATTTGATGGGACGGTGTTCGAGAAGATTGCTGTAGATTACTGTAGAAAGCCCTTGTATCTTNNNNNNNNNNCCCCATCGAATTTCAGACAAAAAAAAACCGGAAAAATCGAAAACGAATATTCAAAGATAGCTGAAACCCCTAAAAAGGTCTAGAAAAAAAAATCGGGGAAAAGGCAATTATTTTTTTCTCGGAAAATCGCCAGTTTCAAAAAAAAACCATTCGAGAACCTTCCAGAGTTTCCAGAAATGGATGGAACTGAGATTTTTCTCTTTTTGAAGCTTTTTCAGTGTTTTTTCTAAYAAAAACCCTTACTCAAGCACAAATTTCTCGTCGCATCATGGGACAAAATTTTGGCTGGAGAATCGAATAAACACAGCATATTAAACCAAGTCCGGTAAATAAATGCACTTCATTCTCGTCTTCGTCAGCTGTCATTGGCACATTTTCAAACGGAATCACACTTTCGTCGCCTGGAATTTTTAATTTTAGGCTCCGCCCACTTTCAGCGAAAATCTTACCAATATCAATTTTCAAATAATCGTCTCCATACATTTTTCGACACACCAACACTGATAATCCCAGAATTTTCTTTGCCCAACATTCGATGATAGGGACCTGGAAAACAATATTTTTGTTGGAATTCGAGGATTTTATGAAAAATGTGCCGTAAAACCTGTATTAGAAGGGCCTGCCCTTCTATTGTTCCAAGGTACCTGCGGAGGGCCCTTCTATTACAGGGGCCTTTCAATTAGAGGGGGCCCTTCTATGTTTTCGGGCCAGTTTTTTCCGAAATTTTGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAGAAATGTGAAGATTTACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TATGCTGTGTTTATTCGATTCTC</pcr_primer_p2>
		<pcr_amplicon_size>518</pcr_amplicon_size>
		<canonical_amplicon>TCTAGAAATGTGAAGATTTACAAAAAAAACGAAAAATTGATTTTTTCTTCGATTTTTCGCTAAATGTTCAAACCTTTTTAGGGTTTTCAGCTATTTTCAAAGATTCTTTTTCGATTTTTCGAATTTTTTGTCTGAAATTTGATGGGACGGTGTTCGAGAAGATTGCTGTAGATTACTGTAGAAAGCCCTTGTATCTTNNNNNNNNNNCCCCATCGAATTTCAGACAAAAAAAAACCGGAAAAATCGAAAACGAATATTCAAAGATAGCTGAAACCCCTAAAAAGGTCTAGAAAAAAAAATCGGGGAAAAGGCAATTATTTTTTTCTCGGAAAATCGCCAGTTTCAAAAAAAAACCATTCGAGAACCTTCCAGAGTTTCCAGAAATGGATGGAACTGAGATTTTTCTCTTTTTGAAGCTTTTTCAGTGTTTTTTCTAATAAAAACCCTTACTCAAGCACAAATTTCTCGTCGCATCATGGGACAAAATTTTGGCTGGAGAATCGAATAAACACAGCATA</canonical_amplicon>
		<polymorphic_amplicon>TCTAGAAATGTGAAGATTTACAAAAAAAACGAAAAATTGATTTTTTCTTCGATTTTTCGCTAAATGTTCAAACCTTTTTAGGGTTTTCAGCTATTTTCAAAGATTCTTTTTCGATTTTTCGAATTTTTTGTCTGAAATTTGATGGGACGGTGTTCGAGAAGATTGCTGTAGATTACTGTAGAAAGCCCTTGTATCTTNNNNNNNNNNCCCCATCGAATTTCAGACAAAAAAAAACCGGAAAAATCGAAAACGAATATTCAAAGATAGCTGAAACCCCTAAAAAGGTCTAGAAAAAAAAATCGGGGAAAAGGCAATTATTTTTTTCTCGGAAAATCGCCAGTTTCAAAAAAAAACCATTCGAGAACCTTCCAGAGTTTCCAGAAATGGATGGAACTGAGATTTTTCTCTTTTTGAAGCTTTTTCAGTGTTTTTTCTAAYAAAAACCCTTACTCAAGCACAAATTTCTCGTCGCATCATGGGACAAAATTTTGGCTGGAGAATCGAATAAACACAGCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1384</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>33846</contig_pos>
        <strand>+</strand>
        <context>CTMMYAAAAA[C/T]CCTTACTCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGAGATTTTTCTCTTTTTGAAGCTTTTTCAGTGTTTTTTCTAATAAAAA</left_flank>
        <right_flank>CCTTACTCAAGCACAAATTTCTCGTCGCATCATGGGACAAAATTTTGGCT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAAATTTGAGGACTTTTCAATTTTCAAAAAATTGAATCCAAGTAACTTAAGAATCTAGAAATGTGAAGATTTACAAAAAAAACGAAAAATTGATTTTTTCTTCGATTTTTCGCTAAATGTTCAAACCTTTTTAGGGTTTTCAGCTATTTTCAAAGATTCTTTTTCGATTTTTCGAATTTTTTGTCTGAAATTTGATGGGACGGTGTTCGAGAAGATTGCTGTAGATTACTGTAGAAAGCCCTTGTATCTTNNNNNNNNNNCCCCATCGAATTTCAGACAAAAAAAAACCGGAAAAATCGAAAACGAATATTCAAAGATAGCTGAAACCCCTAAAAAGGTCTAGAAAAAAAAATCGGGGAAAAGGCAATTATTTTTTTCTCGGAAAATCGCCAGTTTCAAAAAAAAACCATTCGAGAACCTTCCAGAGTTTCCAGAAATGGATGGAACTGAGATTTTTCTCTTTTTGAAGCTTTTTCAGTGTTTTTTCTAATAAAAACCCTTACTCAAGCACAAATTTCTCGTCGCATCATGGGACAAAATTTTGGCTGGAGAATCGAATAAACACAGCATATTAAACCAAGTCCGGTAAATAAATGCACTTCATTCTCGTCTTCGTCAGCTGTCATTGGCACATTTTCAAACGGAATCACACTTTCGTCGCCTGGAATTTTTAATTTTAGGCTCCGCCCACTTTCAGCGAAAATCTTACCAATATCAATTTTCAAATAATCGTCTCCATACATTTTTCGACACACCAACACTGATAATCCCAGAATTTTCTTTGCCCAACATTCGATGATAGGGACCTGGAAAACAATATTTTTGTTGGAATTCGAGGATTTTATGAAAAATGTGCCGTAAAACCTGTATTAGAAGGGCCTGCCCTTCTATTGTTCCAAGGTACCTGCGGAGGGCCCTTCTATTACAGGGGCCTTTCAATTAGAGGGGGCCCTTCTATGTTTTCGGGCCAGTTTTTTCCGAAATTTTGCAACGAAGA</canonical>
            <polymorphic>TTTCAAATTTGAGGACTTTTCAATTTTCAAAAAATTGAATCCAAGTAACTTAAGAATCTAGAAATGTGAAGATTTACAAAAAAAACGAAAAATTGATTTTTTCTTCGATTTTTCGCTAAATGTTCAAACCTTTTTAGGGTTTTCAGCTATTTTCAAAGATTCTTTTTCGATTTTTCGAATTTTTTGTCTGAAATTTGATGGGACGGTGTTCGAGAAGATTGCTGTAGATTACTGTAGAAAGCCCTTGTATCTTNNNNNNNNNNCCCCATCGAATTTCAGACAAAAAAAAACCGGAAAAATCGAAAACGAATATTCAAAGATAGCTGAAACCCCTAAAAAGGTCTAGAAAAAAAAATCGGGGAAAAGGCAATTATTTTTTTCTCGGAAAATCGCCAGTTTCAAAAAAAAACCATTCGAGAACCTTCCAGAGTTTCCAGAAATGGATGGAACTGAGATTTTTCTCTTTTTGAAGCTTTTTCAGTGTTTTTTCTAATAAAAAYCCTTACTCAAGCACAAATTTCTCGTCGCATCATGGGACAAAATTTTGGCTGGAGAATCGAATAAACACAGCATATTAAACCAAGTCCGGTAAATAAATGCACTTCATTCTCGTCTTCGTCAGCTGTCATTGGCACATTTTCAAACGGAATCACACTTTCGTCGCCTGGAATTTTTAATTTTAGGCTCCGCCCACTTTCAGCGAAAATCTTACCAATATCAATTTTCAAATAATCGTCTCCATACATTTTTCGACACACCAACACTGATAATCCCAGAATTTTCTTTGCCCAACATTCGATGATAGGGACCTGGAAAACAATATTTTTGTTGGAATTCGAGGATTTTATGAAAAATGTGCCGTAAAACCTGTATTAGAAGGGCCTGCCCTTCTATTGTTCCAAGGTACCTGCGGAGGGCCCTTCTATTACAGGGGCCTTTCAATTAGAGGGGGCCCTTCTATGTTTTCGGGCCAGTTTTTTCCGAAATTTTGCAACGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGGAACTGAGATTTTTCTCTTT</pcr_primer_p1>
		<pcr_primer_p2>AGTGTGATTCCGTTTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>213</pcr_amplicon_size>
		<canonical_amplicon>ATGGAACTGAGATTTTTCTCTTTTTGAAGCTTTTTCAGTGTTTTTTCTAATAAAAACCCTTACTCAAGCACAAATTTCTCGTCGCATCATGGGACAAAATTTTGGCTGGAGAATCGAATAAACACAGCATATTAAACCAAGTCCGGTAAATAAATGCACTTCATTCTCGTCTTCGTCAGCTGTCATTGGCACATTTTCAAACGGAATCACACT</canonical_amplicon>
		<polymorphic_amplicon>ATGGAACTGAGATTTTTCTCTTTTTGAAGCTTTTTCAGTGTTTTTTCTAATAAAAAYCCTTACTCAAGCACAAATTTCTCGTCGCATCATGGGACAAAATTTTGGCTGGAGAATCGAATAAACACAGCATATTAAACCAAGTCCGGTAAATAAATGCACTTCATTCTCGTCTTCGTCAGCTGTCATTGGCACATTTTCAAACGGAATCACACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1386</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>35717</contig_pos>
        <strand>+</strand>
        <context>CAGAATCTCA[C/T]TTTAAGAATC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGCCAGTGGAGATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCA</left_flank>
        <right_flank>TTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGCCAACGTTGAAAGTGAGCTCCAATAGGTCAACGATGGAATATGCTCATTGAGCACTGCATTTAACCACATATCAAACAACGTATCAGTCACTCGAACACAAGTTCTCGTTCCCATTTCCTCAGTCGCATTCGGTTCCGATAGTAGAATATCAGAACTATTCAACAAGAAGCTTATCGTTCTCGCCCATACTTCATCTTGATACTTTCTACTTGAATTCCTTGTCAGATACTTCAATGAATCCAGAACCATATCAATCTCAATCGACTGTCTTTCTATTGCCAATCCACGTGGTACTTGAGAAGAACCGCCGAGTGTGGATTCAAGATCATCGTCACGTCTACAGAAGACCCAACGGAGAGCGTCGATGATGTTTCGGAAATATTTCTCTGGGGTTGCCAGTAGAGGAATCGGGATGTTGTTGTCTGGAGTGTCGCAGAGGGCACGAAGCCAGTGGAGATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCATTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAA</canonical>
            <polymorphic>TTGGCCAACGTTGAAAGTGAGCTCCAATAGGTCAACGATGGAATATGCTCATTGAGCACTGCATTTAACCACATATCAAACAACGTATCAGTCACTCGAACACAAGTTCTCGTTCCCATTTCCTCAGTCGCATTCGGTTCCGATAGTAGAATATCAGAACTATTCAACAAGAAGCTTATCGTTCTCGCCCATACTTCATCTTGATACTTTCTACTTGAATTCCTTGTCAGATACTTCAATGAATCCAGAACCATATCAATCTCAATCGACTGTCTTTCTATTGCCAATCCACGTGGTACTTGAGAAGAACCGCCGAGTGTGGATTCAAGATCATCGTCACGTCTACAGAAGACCCAACGGAGAGCGTCGATGATGTTTCGGAAATATTTCTCTGGGGTTGCCAGTAGAGGAATCGGGATGTTGTTGTCTGGAGTGTCGCAGAGGGCACGAAGCCAGTGGAGATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCAYTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGCCAGTGGAGATAGATTC</pcr_primer_p1>
		<pcr_primer_p2>GAAAAATCATCCAGATTTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>GAAGCCAGTGGAGATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCATTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTC</canonical_amplicon>
		<polymorphic_amplicon>GAAGCCAGTGGAGATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCAYTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1387</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>36609</contig_pos>
        <strand>+</strand>
        <context>GTTTGTCTGT[C/T]TGTCCGGATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTGAAAATCTCAGATTTTTTCCAAAAATTCAGATTTTCTGTTTGTCTGT</left_flank>
        <right_flank>TGTCCGGATGTCCTTATTAATACCAAAAATATGAAAATCACATTTTACAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTAACTTTTTTAGTTCCTTTTTTAGTGAAATTTTCGAATTTTCGGGAAAAAAATTTCCAATTTCAGTGATTTTTTGAAATTTTAAAAACGATTTTTCGACTTAAAAGTGACTGAAAATCTCAGATTTTTTCCAAAAATTCAGATTTTCTGTTTGTCTGTTTGTCCGGATGTCCTTATTAATACCAAAAATATGAAAATCACATTTTACAATTCACAACACAAAGAAGATAGTTCACTAAACAGAAGCATCTTAGAGAGGAGCATACCATTGTTTCGAAGGTTACTGTAGCTTTTTTACCGTACTTTTCCATTTAAATAAATATCGAAAACTATAGGAATAATAAACGAGAATTGTCTGAAATTTTTTGATTAAAGGAATTTCGGCTTTTTAGGTCAAATTTTGCAGATTTTCAGCTCCAAACCTACCTTTAAGTGTCTCATACTCTCGACTCGTCGCAAAAGAGAGTGTCAATGAGTGATTCAACACTTGCATACACCATTTCAAGTGTTCTTCGCTATTCAAACGAATCGATCCTCCATTCTCATCGGCATCCGATCGAGTCAGCTCGTAGAGAAGAGATGAGGCAACCGATTGGGATGTGGCTCTGCAATTTTTGGATTTTTGGGACATTTTGGGTGTTTTTTTGGATATTTTAGGGG</canonical>
            <polymorphic>ATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTAACTTTTTTAGTTCCTTTTTTAGTGAAATTTTCGAATTTTCGGGAAAAAAATTTCCAATTTCAGTGATTTTTTGAAATTTTAAAAACGATTTTTCGACTTAAAAGTGACTGAAAATCTCAGATTTTTTCCAAAAATTCAGATTTTCTGTTTGTCTGTYTGTCCGGATGTCCTTATTAATACCAAAAATATGAAAATCACATTTTACAATTCACAACACAAAGAAGATAGTTCACTAAACAGAAGCATCTTAGAGAGGAGCATACCATTGTTTCGAAGGTTACTGTAGCTTTTTTACCGTACTTTTCCATTTAAATAAATATCGAAAACTATAGGAATAATAAACGAGAATTGTCTGAAATTTTTTGATTAAAGGAATTTCGGCTTTTTAGGTCAAATTTTGCAGATTTTCAGCTCCAAACCTACCTTTAAGTGTCTCATACTCTCGACTCGTCGCAAAAGAGAGTGTCAATGAGTGATTCAACACTTGCATACACCATTTCAAGTGTTCTTCGCTATTCAAACGAATCGATCCTCCATTCTCATCGGCATCCGATCGAGTCAGCTCGTAGAGAAGAGATGAGGCAACCGATTGGGATGTGGCTCTGCAATTTTTGGATTTTTGGGACATTTTGGGTGTTTTTTTGGATATTTTAGGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTGAGCTTCAGAAAATTTGTA</pcr_primer_p1>
		<pcr_primer_p2>ATCTTCTTTGTGTTGTGAATTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGTTGAGCTTCAGAAAATTTGTAACTTTTTTAGTTCCTTTTTTAGTGAAATTTTCGAATTTTCGGGAAAAAAATTTCCAATTTCAGTGATTTTTTGAAATTTTAAAAACGATTTTTCGACTTAAAAGTGACTGAAAATCTCAGATTTTTTCCAAAAATTCAGATTTTCTGTTTGTCTGTTTGTCCGGATGTCCTTATTAATACCAAAAATATGAAAATCACATTTTACAATTCACAACACAAAGAAGAT</canonical_amplicon>
		<polymorphic_amplicon>AGTTGAGCTTCAGAAAATTTGTAACTTTTTTAGTTCCTTTTTTAGTGAAATTTTCGAATTTTCGGGAAAAAAATTTCCAATTTCAGTGATTTTTTGAAATTTTAAAAACGATTTTTCGACTTAAAAGTGACTGAAAATCTCAGATTTTTTCCAAAAATTCAGATTTTCTGTTTGTCTGTYTGTCCGGATGTCCTTATTAATACCAAAAATATGAAAATCACATTTTACAATTCACAACACAAAGAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1388</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>36412</contig_pos>
        <strand>+</strand>
        <context>TAAAAATAGA[G/T]ATTTTTTGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGA</left_flank>
        <right_flank>ATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTAACTTTTTTAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTAACTTTTTTAGTTCCTTTTTTAGTGAAATTTTCGAATTTTCGGGAAAAAAATTTCCAATTTCAGTGATTTTTTGAAATTTTAAAAACGATTTTTCGACTTAAAAGTGACTGAAAATCTCAGATTTTTTCCAAAAATTCAGATTTTCTGTTTGTCTGTTTGTCCGGATGTCCTTATTAATACCAAAAATATGAAAATCACATTTTACAATTCACAACACAAAGAAGATAGTTCACTAAACAGAAGCATCTTAGAGAGGAGCATACCATTGTTTCGAAGGTTACTGTAGCTTTTTTACCGTACTTTTCCATTTAAATAAATATCGAAAACTATAGGAATAATAAACGAGAATTGTCTGAAATTTTTTGATTAAAGGAATTTCGGCTTTTTAGGTCAAATTTTGCAGATTTTCAGCTCCAAACCTACCTTTAAGTGTCTCATACTCTCGACTCGTCGCAAAAGA</canonical>
            <polymorphic>ATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGAKATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTAACTTTTTTAGTTCCTTTTTTAGTGAAATTTTCGAATTTTCGGGAAAAAAATTTCCAATTTCAGTGATTTTTTGAAATTTTAAAAACGATTTTTCGACTTAAAAGTGACTGAAAATCTCAGATTTTTTCCAAAAATTCAGATTTTCTGTTTGTCTGTTTGTCCGGATGTCCTTATTAATACCAAAAATATGAAAATCACATTTTACAATTCACAACACAAAGAAGATAGTTCACTAAACAGAAGCATCTTAGAGAGGAGCATACCATTGTTTCGAAGGTTACTGTAGCTTTTTTACCGTACTTTTCCATTTAAATAAATATCGAAAACTATAGGAATAATAAACGAGAATTGTCTGAAATTTTTTGATTAAAGGAATTTCGGCTTTTTAGGTCAAATTTTGCAGATTTTCAGCTCCAAACCTACCTTTAAGTGTCTCATACTCTCGACTCGTCGCAAAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGAAATCTGGATGATTTTTC</pcr_primer_p1>
		<pcr_primer_p2>ACAGACAAACAGAAAATCTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>623</pcr_amplicon_size>
		<canonical_amplicon>GTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTAACTTTTTTAGTTCCTTTTTTAGTGAAATTTTCGAATTTTCGGGAAAAAAATTTCCAATTTCAGTGATTTTTTGAAATTTTAAAAACGATTTTTCGACTTAAAAGTGACTGAAAATCTCAGATTTTTTCCAAAAATTCAGATTTTCTGTTTGTCTGT</canonical_amplicon>
		<polymorphic_amplicon>GTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGAKATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTAACTTTTTTAGTTCCTTTTTTAGTGAAATTTTCGAATTTTCGGGAAAAAAATTTCCAATTTCAGTGATTTTTTGAAATTTTAAAAACGATTTTTCGACTTAAAAGTGACTGAAAATCTCAGATTTTTTCCAAAAATTCAGATTTTCTGTTTGTCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1389</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>36396</contig_pos>
        <strand>+</strand>
        <context>CTTRGWACCA[A/G]AATAATAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCA</left_flank>
        <right_flank>AATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTAACTTTTTTAGTTCCTTTTTTAGTGAAATTTTCGAATTTTCGGGAAAAAAATTTCCAATTTCAGTGATTTTTTGAAATTTTAAAAACGATTTTTCGACTTAAAAGTGACTGAAAATCTCAGATTTTTTCCAAAAATTCAGATTTTCTGTTTGTCTGTTTGTCCGGATGTCCTTATTAATACCAAAAATATGAAAATCACATTTTACAATTCACAACACAAAGAAGATAGTTCACTAAACAGAAGCATCTTAGAGAGGAGCATACCATTGTTTCGAAGGTTACTGTAGCTTTTTTACCGTACTTTTCCATTTAAATAAATATCGAAAACTATAGGAATAATAAACGAGAATTGTCTGAAATTTTTTGATTAAAGGAATTTCGGCTTTTTAGGTCAAATTTTGCAGATTTTCAGCTCCAAACCTACCTTTAAGTGTCTCATACTCTC</canonical>
            <polymorphic>TTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCARAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTAACTTTTTTAGTTCCTTTTTTAGTGAAATTTTCGAATTTTCGGGAAAAAAATTTCCAATTTCAGTGATTTTTTGAAATTTTAAAAACGATTTTTCGACTTAAAAGTGACTGAAAATCTCAGATTTTTTCCAAAAATTCAGATTTTCTGTTTGTCTGTTTGTCCGGATGTCCTTATTAATACCAAAAATATGAAAATCACATTTTACAATTCACAACACAAAGAAGATAGTTCACTAAACAGAAGCATCTTAGAGAGGAGCATACCATTGTTTCGAAGGTTACTGTAGCTTTTTTACCGTACTTTTCCATTTAAATAAATATCGAAAACTATAGGAATAATAAACGAGAATTGTCTGAAATTTTTTGATTAAAGGAATTTCGGCTTTTTAGGTCAAATTTTGCAGATTTTCAGCTCCAAACCTACCTTTAAGTGTCTCATACTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTTCAGAATTTTAAGCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TACAAATTTTCTGAAGCTCAACT</pcr_primer_p2>
		<pcr_amplicon_size>453</pcr_amplicon_size>
		<canonical_amplicon>GATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCARAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1390</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>36391</contig_pos>
        <strand>+</strand>
        <context>ccttTCTTRG[A/T]ACCARAATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGG</left_flank>
        <right_flank>ACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTAACTTTTTTAGTTCCTTTTTTAGTGAAATTTTCGAATTTTCGGGAAAAAAATTTCCAATTTCAGTGATTTTTTGAAATTTTAAAAACGATTTTTCGACTTAAAAGTGACTGAAAATCTCAGATTTTTTCCAAAAATTCAGATTTTCTGTTTGTCTGTTTGTCCGGATGTCCTTATTAATACCAAAAATATGAAAATCACATTTTACAATTCACAACACAAAGAAGATAGTTCACTAAACAGAAGCATCTTAGAGAGGAGCATACCATTGTTTCGAAGGTTACTGTAGCTTTTTTACCGTACTTTTCCATTTAAATAAATATCGAAAACTATAGGAATAATAAACGAGAATTGTCTGAAATTTTTTGATTAAAGGAATTTCGGCTTTTTAGGTCAAATTTTGCAGATTTTCAGCTCCAAACCTACCTTTAAGTGTCTCATA</canonical>
            <polymorphic>ATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGWACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTAACTTTTTTAGTTCCTTTTTTAGTGAAATTTTCGAATTTTCGGGAAAAAAATTTCCAATTTCAGTGATTTTTTGAAATTTTAAAAACGATTTTTCGACTTAAAAGTGACTGAAAATCTCAGATTTTTTCCAAAAATTCAGATTTTCTGTTTGTCTGTTTGTCCGGATGTCCTTATTAATACCAAAAATATGAAAATCACATTTTACAATTCACAACACAAAGAAGATAGTTCACTAAACAGAAGCATCTTAGAGAGGAGCATACCATTGTTTCGAAGGTTACTGTAGCTTTTTTACCGTACTTTTCCATTTAAATAAATATCGAAAACTATAGGAATAATAAACGAGAATTGTCTGAAATTTTTTGATTAAAGGAATTTCGGCTTTTTAGGTCAAATTTTGCAGATTTTCAGCTCCAAACCTACCTTTAAGTGTCTCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTTCAGAATTTTAAGCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TACAAATTTTCTGAAGCTCAACT</pcr_primer_p2>
		<pcr_amplicon_size>453</pcr_amplicon_size>
		<canonical_amplicon>GATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGWACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1391</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>36389</contig_pos>
        <strand>+</strand>
        <context>gaccttTCTT[A/G]GWACCARAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTT</left_flank>
        <right_flank>GAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTAACTTTTTTAGTTCCTTTTTTAGTGAAATTTTCGAATTTTCGGGAAAAAAATTTCCAATTTCAGTGATTTTTTGAAATTTTAAAAACGATTTTTCGACTTAAAAGTGACTGAAAATCTCAGATTTTTTCCAAAAATTCAGATTTTCTGTTTGTCTGTTTGTCCGGATGTCCTTATTAATACCAAAAATATGAAAATCACATTTTACAATTCACAACACAAAGAAGATAGTTCACTAAACAGAAGCATCTTAGAGAGGAGCATACCATTGTTTCGAAGGTTACTGTAGCTTTTTTACCGTACTTTTCCATTTAAATAAATATCGAAAACTATAGGAATAATAAACGAGAATTGTCTGAAATTTTTTGATTAAAGGAATTTCGGCTTTTTAGGTCAAATTTTGCAGATTTTCAGCTCCAAACCTACCTTTAAGTGTCTCA</canonical>
            <polymorphic>TTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTRGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTAACTTTTTTAGTTCCTTTTTTAGTGAAATTTTCGAATTTTCGGGAAAAAAATTTCCAATTTCAGTGATTTTTTGAAATTTTAAAAACGATTTTTCGACTTAAAAGTGACTGAAAATCTCAGATTTTTTCCAAAAATTCAGATTTTCTGTTTGTCTGTTTGTCCGGATGTCCTTATTAATACCAAAAATATGAAAATCACATTTTACAATTCACAACACAAAGAAGATAGTTCACTAAACAGAAGCATCTTAGAGAGGAGCATACCATTGTTTCGAAGGTTACTGTAGCTTTTTTACCGTACTTTTCCATTTAAATAAATATCGAAAACTATAGGAATAATAAACGAGAATTGTCTGAAATTTTTTGATTAAAGGAATTTCGGCTTTTTAGGTCAAATTTTGCAGATTTTCAGCTCCAAACCTACCTTTAAGTGTCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>498 490 12</canonical_bands>
                <polymorphic_bands>510 490</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTTTCAGAATTTTAAGCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TACAAATTTTCTGAAGCTCAACT</pcr_primer_p2>
		<pcr_amplicon_size>453</pcr_amplicon_size>
		<canonical_amplicon>GATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTRGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1392</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>124032</contig_pos>
        <strand></strand>
        <context>CCGACGACAT[T/C]GCTCATCTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GATAAATATCTCTCGGAGCACGGCACCCGCTTCTTGCTCTCCGACGACAT</left_flank>
        <right_flank>GCTCATCTGGATTGTCTCGTCTTGACCAGACTCCATTCGATTCGCATTGC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAATTCCATTTTCTCAATATCTGAAATTGCAAAAAAAAACTGAATTTCAAAAATATGGATATTTCAGAAATTTATCAAAATTCGAAATTTTGAAAACTTCAAAAAATCATAGTTTCCAAAAATTTTAAATTTTCGAGAATTCTGCAAAACTCAAAATGTTAAAAATTTGAATTTAAAAAATTTTAACTTTTCAAACTCGAAAAATACTGAAAATTGGAAAGCTTTTAATCGAGAAATTTATAATTCTTGAAATTAAAAAAAAACATAGAAAAACTCGATATTTTGGAATTTCTAAAATATGAAATTTCAAAGTTCAGAAATACAGAAATTTGAAAATTCGGGAATTTCAAAATGTTCGAAATTTCAGAGTTCAAGTTTTTTCAATATTCAAATTTTAAGAATATTTTTTTTTAATTTCAGTGTCTCAACACAGAACTGCTCCGTTTGGATAAATATCTCTCGGAGCACGGCACCCGCTTCTTGCTCTCCGACGACATTGCTCATCTGGATTGTCTCGTCTTGACCAGACTCCATTCGATTCGCATTGCTGCCAAGGTGAGTGAACATCCGGACACACATAAACACAGAAACTTCCAAATTTAGGCTCTCAAAAACTACGAATTCCCGCCGGATTTGACGCATCTTTGGGACTATTTGAAGTCTGGTTACGATTTGGAAATGTTCCGATTATCGTGTCCATCGGATCAAGAGATCATTCTTCACTGGACCGAACTGAAGGATACACCCAATTTGAGTGCTAAGGAACGTGCCAAATTGGTCCGCGACGAGCCTATCTACAGTTTCTCAGTGGTCTAACTTTTTCGGTTTTTATTTAATAAAATGTTCTAACAAAACACCAGTTTCATTGATTTTGAGGCATTTTTCAAAAGAGAAAAACAGCCAGCGAGAGATCGTGGTGAGAACAATGGGAAAAAATATGGCAGATTTTCGGAAGCAACAACAAAAAAGACCCAATTTTTGGGGAGAACAACAAATTG</canonical>
            <polymorphic>GAGAATTCCATTTTCTCAATATCTGAAATTGCAAAAAAAAACTGAATTTCAAAAATATGGATATTTCAGAAATTTATCAAAATTCGAAATTTTGAAAACTTCAAAAAATCATAGTTTCCAAAAATTTTAAATTTTCGAGAATTCTGCAAAACTCAAAATGTTAAAAATTTGAATTTAAAAAATTTTAACTTTTCAAACTCGAAAAATACTGAAAATTGGAAAGCTTTTAATCGAGAAATTTATAATTCTTGAAATTAAAAAAAAACATAGAAAAACTCGATATTTTGGAATTTCTAAAATATGAAATTTCAAAGTTCAGAAATACAGAAATTTGAAAATTCGGGAATTTCAAAATGTTCGAAATTTCAGAGTTCAAGTTTTTTCAATATTCAAATTTTAAGAATATTTTTTTTTAATTTCAGTGTCTCAACACAGAACTGCTCCGTTTGGATAAATATCTCTCGGAGCACGGCACCCGCTTCTTGCTCTCCGACGACATYGCTCATCTGGATTGTCTCGTCTTGACCAGACTCCATTCGATTCGCATTGCTGCCAAGGTGAGTGAACATCCGGACACACATAAACACAGAAACTTCCAAATTTAGGCTCTCAAAAACTACGAATTCCCGCCGGATTTGACGCATCTTTGGGACTATTTGAAGTCTGGTTACGATTTGGAAATGTTCCGATTATCGTGTCCATCGGATCAAGAGATCATTCTTCACTGGACCGAACTGAAGGATACACCCAATTTGAGTGCTAAGGAACGTGCCAAATTGGTCCGCGACGAGCCTATCTACAGTTTCTCAGTGGTCTAACTTTTTCGGTTTTTATTTAATAAAATGTTCTAACAAAACACCAGTTTCATTGATTTTGAGGCATTTTTCAAAAGAGAAAAACAGCCAGCGAGAGATCGTGGTGAGAACAATGGGAAAAAATATGGCAGATTTTCGGAAGCAACAACAAAAAAGACCCAATTTTTGGGGAGAACAACAAATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGTCTCAACACAGAACTGC</pcr_primer_p1>
		<pcr_primer_p2>AGACTTCAAATAGTCCCAAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGTGTCTCAACACAGAACTGCTCCGTTTGGATAAATATCTCTCGGAGCACGGCACCCGCTTCTTGCTCTCCGACGACATTGCTCATCTGGATTGTCTCGTCTTGACCAGACTCCATTCGATTCGCATTGCTGCCAAGGTGAGTGAACATCCGGACACACATAAACACAGAAACTTCCAAATTTAGGCTCTCAAAAACTACGAATTCCCGCCGGATTTGACGCATCTTTGGGACTATTTGAAGTCT</canonical_amplicon>
		<polymorphic_amplicon>AGTGTCTCAACACAGAACTGCTCCGTTTGGATAAATATCTCTCGGAGCACGGCACCCGCTTCTTGCTCTCCGACGACATYGCTCATCTGGATTGTCTCGTCTTGACCAGACTCCATTCGATTCGCATTGCTGCCAAGGTGAGTGAACATCCGGACACACATAAACACAGAAACTTCCAAATTTAGGCTCTCAAAAACTACGAATTCCCGCCGGATTTGACGCATCTTTGGGACTATTTGAAGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1393</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>124092</contig_pos>
        <strand></strand>
        <context>CTGCCAAGGT[G/A]AGTGAACATC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GATTGTCTCGTCTTGACCAGACTCCATTCGATTCGCATTGCTGCCAAGGT</left_flank>
        <right_flank>AGTGAACATCCGGACACACATAAACACAGAAACTTCCAAATTTAGGCTCT</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATTTCAGAAATTTATCAAAATTCGAAATTTTGAAAACTTCAAAAAATCATAGTTTCCAAAAATTTTAAATTTTCGAGAATTCTGCAAAACTCAAAATGTTAAAAATTTGAATTTAAAAAATTTTAACTTTTCAAACTCGAAAAATACTGAAAATTGGAAAGCTTTTAATCGAGAAATTTATAATTCTTGAAATTAAAAAAAAACATAGAAAAACTCGATATTTTGGAATTTCTAAAATATGAAATTTCAAAGTTCAGAAATACAGAAATTTGAAAATTCGGGAATTTCAAAATGTTCGAAATTTCAGAGTTCAAGTTTTTTCAATATTCAAATTTTAAGAATATTTTTTTTTAATTTCAGTGTCTCAACACAGAACTGCTCCGTTTGGATAAATATCTCTCGGAGCACGGCACCCGCTTCTTGCTCTCCGACGACATTGCTCATCTGGATTGTCTCGTCTTGACCAGACTCCATTCGATTCGCATTGCTGCCAAGGTGAGTGAACATCCGGACACACATAAACACAGAAACTTCCAAATTTAGGCTCTCAAAAACTACGAATTCCCGCCGGATTTGACGCATCTTTGGGACTATTTGAAGTCTGGTTACGATTTGGAAATGTTCCGATTATCGTGTCCATCGGATCAAGAGATCATTCTTCACTGGACCGAACTGAAGGATACACCCAATTTGAGTGCTAAGGAACGTGCCAAATTGGTCCGCGACGAGCCTATCTACAGTTTCTCAGTGGTCTAACTTTTTCGGTTTTTATTTAATAAAATGTTCTAACAAAACACCAGTTTCATTGATTTTGAGGCATTTTTCAAAAGAGAAAAACAGCCAGCGAGAGATCGTGGTGAGAACAATGGGAAAAAATATGGCAGATTTTCGGAAGCAACAACAAAAAAGACCCAATTTTTGGGGAGAACAACAAATTGATAGGATACCGGTAAACAAGAAAAAGAAGAAAAGAAAAAGAAAAAAAAAGAAAAAGGAAA</canonical>
            <polymorphic>ATATTTCAGAAATTTATCAAAATTCGAAATTTTGAAAACTTCAAAAAATCATAGTTTCCAAAAATTTTAAATTTTCGAGAATTCTGCAAAACTCAAAATGTTAAAAATTTGAATTTAAAAAATTTTAACTTTTCAAACTCGAAAAATACTGAAAATTGGAAAGCTTTTAATCGAGAAATTTATAATTCTTGAAATTAAAAAAAAACATAGAAAAACTCGATATTTTGGAATTTCTAAAATATGAAATTTCAAAGTTCAGAAATACAGAAATTTGAAAATTCGGGAATTTCAAAATGTTCGAAATTTCAGAGTTCAAGTTTTTTCAATATTCAAATTTTAAGAATATTTTTTTTTAATTTCAGTGTCTCAACACAGAACTGCTCCGTTTGGATAAATATCTCTCGGAGCACGGCACCCGCTTCTTGCTCTCCGACGACATTGCTCATCTGGATTGTCTCGTCTTGACCAGACTCCATTCGATTCGCATTGCTGCCAAGGTRAGTGAACATCCGGACACACATAAACACAGAAACTTCCAAATTTAGGCTCTCAAAAACTACGAATTCCCGCCGGATTTGACGCATCTTTGGGACTATTTGAAGTCTGGTTACGATTTGGAAATGTTCCGATTATCGTGTCCATCGGATCAAGAGATCATTCTTCACTGGACCGAACTGAAGGATACACCCAATTTGAGTGCTAAGGAACGTGCCAAATTGGTCCGCGACGAGCCTATCTACAGTTTCTCAGTGGTCTAACTTTTTCGGTTTTTATTTAATAAAATGTTCTAACAAAACACCAGTTTCATTGATTTTGAGGCATTTTTCAAAAGAGAAAAACAGCCAGCGAGAGATCGTGGTGAGAACAATGGGAAAAAATATGGCAGATTTTCGGAAGCAACAACAAAAAAGACCCAATTTTTGGGGAGAACAACAAATTGATAGGATACCGGTAAACAAGAAAAAGAAGAAAAGAAAAAGAAAAAAAAAGAAAAAGGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>364 139 111 86 60 46 41 37 27 22 13 12 12 8 8 5 4 3 2</canonical_bands>
                <polymorphic_bands>364 139 111 90 60 46 41 37 27 22 13 12 12 8 8 5 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTGTCTCAACACAGAACTGC</pcr_primer_p1>
		<pcr_primer_p2>AGACTTCAAATAGTCCCAAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGTGTCTCAACACAGAACTGCTCCGTTTGGATAAATATCTCTCGGAGCACGGCACCCGCTTCTTGCTCTCCGACGACATTGCTCATCTGGATTGTCTCGTCTTGACCAGACTCCATTCGATTCGCATTGCTGCCAAGGTGAGTGAACATCCGGACACACATAAACACAGAAACTTCCAAATTTAGGCTCTCAAAAACTACGAATTCCCGCCGGATTTGACGCATCTTTGGGACTATTTGAAGTCT</canonical_amplicon>
		<polymorphic_amplicon>AGTGTCTCAACACAGAACTGCTCCGTTTGGATAAATATCTCTCGGAGCACGGCACCCGCTTCTTGCTCTCCGACGACATTGCTCATCTGGATTGTCTCGTCTTGACCAGACTCCATTCGATTCGCATTGCTGCCAAGGTRAGTGAACATCCGGACACACATAAACACAGAAACTTCCAAATTTAGGCTCTCAAAAACTACGAATTCCCGCCGGATTTGACGCATCTTTGGGACTATTTGAAGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1394</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>126148</contig_pos>
        <strand>+</strand>
        <context>GAACGTTTGA[A/T]ACGGCGGTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATATTTTATTATATCCTTATCGTTGGATATAATCTTCGAGAACGTTTGA</left_flank>
        <right_flank>ACGGCGGTTCTGGTGGTGGCACTCTTCTGATGACGTTGTGCTTGTCCATA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGATCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTTCTATACAATATTAATAAATGGATTTTCAGCAATTTCAGAGTTTTCTGAACCACTTTTCGAATAACCACCAATTTTTTTTTGAATTTTGCCATTCCAAATTTTAAAAAGAATTTTTACCTCATTCCCTTCTCTCTCCTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAGTTCCATAGCATTATAATATTTTATTATATCCTTATCGTTGGATATAATCTTCGAGAACGTTTGATACGGCGGTTCTGGTGGTGGCACTCTTCTGATGACGTTGTGCTTGTCCATAAAGATTCCGGTGTCTCCGATTTTGATAATTCCCGGTGTCGTTTGGATATAGAATACTGGACAAACTCGCGCCAGCTTCTCTTGCCACGTTTCGACGTCTTCTTTTGGAGAAGGATCCGATGGGGTGGATTCTGAAGCATCCGGCTTGGCCACTTTCTCTTGGCCGGATTCTGAAGCAACCGGCTCCAGTCGTGTCGATCGCCTCTGCGTCGGCTCCTTCCTTGCTCTCTTAACAGGAGTTTTCGCTATTTTTGGAGATTTGGCGGCAGCTCTCTTCTGGCGTTTTGGGGGCGATGGTGGAGCAGCGACATTTTGAATTTTGGAGGATTTGAATCTAGCTACAGTAGGAATCCGTGGGTTCGCTGTATAAAGTTTGGGATGACTTCTAGCGGGATCTCTCAGAGCGGCGGTGTTTTTCGGGTAACTTGGAGCAGGAGTTGGTTTTGGAGCT</canonical>
            <polymorphic>AAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGATCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTTCTATACAATATTAATAAATGGATTTTCAGCAATTTCAGAGTTTTCTGAACCACTTTTCGAATAACCACCAATTTTTTTTTGAATTTTGCCATTCCAAATTTTAAAAAGAATTTTTACCTCATTCCCTTCTCTCTCCTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAGTTCCATAGCATTATAATATTTTATTATATCCTTATCGTTGGATATAATCTTCGAGAACGTTTGAWACGGCGGTTCTGGTGGTGGCACTCTTCTGATGACGTTGTGCTTGTCCATAAAGATTCCGGTGTCTCCGATTTTGATAATTCCCGGTGTCGTTTGGATATAGAATACTGGACAAACTCGCGCCAGCTTCTCTTGCCACGTTTCGACGTCTTCTTTTGGAGAAGGATCCGATGGGGTGGATTCTGAAGCATCCGGCTTGGCCACTTTCTCTTGGCCGGATTCTGAAGCAACCGGCTCCAGTCGTGTCGATCGCCTCTGCGTCGGCTCCTTCCTTGCTCTCTTAACAGGAGTTTTCGCTATTTTTGGAGATTTGGCGGCAGCTCTCTTCTGGCGTTTTGGGGGCGATGGTGGAGCAGCGACATTTTGAATTTTGGAGGATTTGAATCTAGCTACAGTAGGAATCCGTGGGTTCGCTGTATAAAGTTTGGGATGACTTCTAGCGGGATCTCTCAGAGCGGCGGTGTTTTTCGGGTAACTTGGAGCAGGAGTTGGTTTTGGAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTGAATCGTCTCCTTAGACT</pcr_primer_p1>
		<pcr_primer_p2>GAATTATCAAAATCGGAGACAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAGTTCCATAGCATTATAATATTTTATTATATCCTTATCGTTGGATATAATCTTCGAGAACGTTTGATACGGCGGTTCTGGTGGTGGCACTCTTCTGATGACGTTGTGCTTGTCCATAAAGATTCCGGTGTCTCCGATTTTGATAATTC</canonical_amplicon>
		<polymorphic_amplicon>CTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAGTTCCATAGCATTATAATATTTTATTATATCCTTATCGTTGGATATAATCTTCGAGAACGTTTGAWACGGCGGTTCTGGTGGTGGCACTCTTCTGATGACGTTGTGCTTGTCCATAAAGATTCCGGTGTCTCCGATTTTGATAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1395</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>126033</contig_pos>
        <strand>+</strand>
        <context>ATTTCGCTCC[A/T]TCCTTCACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCC</left_flank>
        <right_flank>TCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGGTTTTTGAATTTTCGAAATCTCAATTTTTAGAATTTTTACGTTCTGAATCTCGGAAATCAAAATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGATCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTTCTATACAATATTAATAAATGGATTTTCAGCAATTTCAGAGTTTTCTGAACCACTTTTCGAATAACCACCAATTTTTTTTTGAATTTTGCCATTCCAAATTTTAAAAAGAATTTTTACCTCATTCCCTTCTCTCTCCTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAGTTCCATAGCATTATAATATTTTATTATATCCTTATCGTTGGATATAATCTTCGAGAACGTTTGATACGGCGGTTCTGGTGGTGGCACTCTTCTGATGACGTTGTGCTTGTCCATAAAGATTCCGGTGTCTCCGATTTTGATAATTCCCGGTGTCGTTTGGATATAGAATACTGGACAAACTCGCGCCAGCTTCTCTTGCCACGTTTCGACGTCTTCTTTTGGAGAAGGATCCGATGGGGTGGATTCTGAAGCATCCGGCTTGGCCACTTTCTCTTGGCCGGATTCTGAAGCAACCGGCTCCAGTCGTGTCGATCGCCTCTGCGTCGGCTCCTTCCTTGCTCTCTTAACAGGAGTTTTCGCTATTTTTGGAGATTTGGCGGCAGCTCTCTTCTGGCGTTTTGGGGGCGATGGTGGAGCAGCGACATTTTGAATTTTGGAGGATTTGAATCT</canonical>
            <polymorphic>CTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGGTTTTTGAATTTTCGAAATCTCAATTTTTAGAATTTTTACGTTCTGAATCTCGGAAATCAAAATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGATCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTTCTATACAATATTAATAAATGGATTTTCAGCAATTTCAGAGTTTTCTGAACCACTTTTCGAATAACCACCAATTTTTTTTTGAATTTTGCCATTCCAAATTTTAAAAAGAATTTTTACCTCATTCCCTTCTCTCTCCTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCCWTCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAGTTCCATAGCATTATAATATTTTATTATATCCTTATCGTTGGATATAATCTTCGAGAACGTTTGATACGGCGGTTCTGGTGGTGGCACTCTTCTGATGACGTTGTGCTTGTCCATAAAGATTCCGGTGTCTCCGATTTTGATAATTCCCGGTGTCGTTTGGATATAGAATACTGGACAAACTCGCGCCAGCTTCTCTTGCCACGTTTCGACGTCTTCTTTTGGAGAAGGATCCGATGGGGTGGATTCTGAAGCATCCGGCTTGGCCACTTTCTCTTGGCCGGATTCTGAAGCAACCGGCTCCAGTCGTGTCGATCGCCTCTGCGTCGGCTCCTTCCTTGCTCTCTTAACAGGAGTTTTCGCTATTTTTGGAGATTTGGCGGCAGCTCTCTTCTGGCGTTTTGGGGGCGATGGTGGAGCAGCGACATTTTGAATTTTGGAGGATTTGAATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTGAATCGTCTCCTTAGACT</pcr_primer_p1>
		<pcr_primer_p2>GAATTATCAAAATCGGAGACAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAGTTCCATAGCATTATAATATTTTATTATATCCTTATCGTTGGATATAATCTTCGAGAACGTTTGATACGGCGGTTCTGGTGGTGGCACTCTTCTGATGACGTTGTGCTTGTCCATAAAGATTCCGGTGTCTCCGATTTTGATAATTC</canonical_amplicon>
		<polymorphic_amplicon>CTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCCWTCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAGTTCCATAGCATTATAATATTTTATTATATCCTTATCGTTGGATATAATCTTCGAGAACGTTTGATACGGCGGTTCTGGTGGTGGCACTCTTCTGATGACGTTGTGCTTGTCCATAAAGATTCCGGTGTCTCCGATTTTGATAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1396</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>126012</contig_pos>
        <strand>+</strand>
        <context>TGTTTCTCAA[A/C]ATCATCTCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCATTCCCTTCTCTCTCCTTCTGAATCGTCTCCTTAGACTTGTTTCTCAA</left_flank>
        <right_flank>ATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACATCAGAATTTTCGAATTTCTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGGTTTTTGAATTTTCGAAATCTCAATTTTTAGAATTTTTACGTTCTGAATCTCGGAAATCAAAATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGATCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTTCTATACAATATTAATAAATGGATTTTCAGCAATTTCAGAGTTTTCTGAACCACTTTTCGAATAACCACCAATTTTTTTTTGAATTTTGCCATTCCAAATTTTAAAAAGAATTTTTACCTCATTCCCTTCTCTCTCCTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAGTTCCATAGCATTATAATATTTTATTATATCCTTATCGTTGGATATAATCTTCGAGAACGTTTGATACGGCGGTTCTGGTGGTGGCACTCTTCTGATGACGTTGTGCTTGTCCATAAAGATTCCGGTGTCTCCGATTTTGATAATTCCCGGTGTCGTTTGGATATAGAATACTGGACAAACTCGCGCCAGCTTCTCTTGCCACGTTTCGACGTCTTCTTTTGGAGAAGGATCCGATGGGGTGGATTCTGAAGCATCCGGCTTGGCCACTTTCTCTTGGCCGGATTCTGAAGCAACCGGCTCCAGTCGTGTCGATCGCCTCTGCGTCGGCTCCTTCCTTGCTCTCTTAACAGGAGTTTTCGCTATTTTTGGAGATTTGGCGGCAGCTCTCTTCTGGCGTTTTGGGGGCGATGGTGGAGCAGCGACATTTTG</canonical>
            <polymorphic>AACATCAGAATTTTCGAATTTCTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGGTTTTTGAATTTTCGAAATCTCAATTTTTAGAATTTTTACGTTCTGAATCTCGGAAATCAAAATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGATCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTTCTATACAATATTAATAAATGGATTTTCAGCAATTTCAGAGTTTTCTGAACCACTTTTCGAATAACCACCAATTTTTTTTTGAATTTTGCCATTCCAAATTTTAAAAAGAATTTTTACCTCATTCCCTTCTCTCTCCTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAMATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAGTTCCATAGCATTATAATATTTTATTATATCCTTATCGTTGGATATAATCTTCGAGAACGTTTGATACGGCGGTTCTGGTGGTGGCACTCTTCTGATGACGTTGTGCTTGTCCATAAAGATTCCGGTGTCTCCGATTTTGATAATTCCCGGTGTCGTTTGGATATAGAATACTGGACAAACTCGCGCCAGCTTCTCTTGCCACGTTTCGACGTCTTCTTTTGGAGAAGGATCCGATGGGGTGGATTCTGAAGCATCCGGCTTGGCCACTTTCTCTTGGCCGGATTCTGAAGCAACCGGCTCCAGTCGTGTCGATCGCCTCTGCGTCGGCTCCTTCCTTGCTCTCTTAACAGGAGTTTTCGCTATTTTTGGAGATTTGGCGGCAGCTCTCTTCTGGCGTTTTGGGGGCGATGGTGGAGCAGCGACATTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCACTTTTCGAATAACCAC</pcr_primer_p1>
		<pcr_primer_p2>TCGAAGATTATATCCAACGATAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AACCACTTTTCGAATAACCACCAATTTTTTTTTGAATTTTGCCATTCCAAATTTTAAAAAGAATTTTTACCTCATTCCCTTCTCTCTCCTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAGTTCCATAGCATTATAATATTTTATTATATCCTTATCGTTGGATATAATCTTCGA</canonical_amplicon>
		<polymorphic_amplicon>AACCACTTTTCGAATAACCACCAATTTTTTTTTGAATTTTGCCATTCCAAATTTTAAAAAGAATTTTTACCTCATTCCCTTCTCTCTCCTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAMATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAGTTCCATAGCATTATAATATTTTATTATATCCTTATCGTTGGATATAATCTTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1397</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>125940</contig_pos>
        <strand></strand>
        <context>TGCCATTCCA[A/C]ATTTTAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAACCACTTTTCGAATAACCACCAATTTTTTTTTGAATTTTGCCATTCCA</left_flank>
        <right_flank>ATTTTAAAAAGAATTTTTACCTCATTCCCTTCTCTCTCCTTCTGAATCGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGAAACCTTAGGAATTTGCGAATTCCTTAAAGTTGGAATTTCAGAAAATTCGAAACTTCAGAGTTTGTGAACATCAGAATTTTCGAATTTCTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGGTTTTTGAATTTTCGAAATCTCAATTTTTAGAATTTTTACGTTCTGAATCTCGGAAATCAAAATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGATCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTTCTATACAATATTAATAAATGGATTTTCAGCAATTTCAGAGTTTTCTGAACCACTTTTCGAATAACCACCAATTTTTTTTTGAATTTTGCCATTCCAAATTTTAAAAAGAATTTTTACCTCATTCCCTTCTCTCTCCTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAGTTCCATAGCATTATAATATTTTATTATATCCTTATCGTTGGATATAATCTTCGAGAACGTTTGATACGGCGGTTCTGGTGGTGGCACTCTTCTGATGACGTTGTGCTTGTCCATAAAGATTCCGGTGTCTCCGATTTTGATAATTCCCGGTGTCGTTTGGATATAGAATACTGGACAAACTCGCGCCAGCTTCTCTTGCCACGTTTCGACGTCTTCTTTTGGAGAAGGATCCGATGGGGTGGATTCTGAAGCATCCGGCTTGGCCACTTTCTCTTGGCCGGATTCTGAAGCAACCGGCTCCAGTCGTGTCGATCGCCTCTGCGTCGGCTCCTTCCTTGCTCTCTTAACAGGAGTTTT</canonical>
            <polymorphic>TTCTGAAACCTTAGGAATTTGCGAATTCCTTAAAGTTGGAATTTCAGAAAATTCGAAACTTCAGAGTTTGTGAACATCAGAATTTTCGAATTTCTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGGTTTTTGAATTTTCGAAATCTCAATTTTTAGAATTTTTACGTTCTGAATCTCGGAAATCAAAATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGATCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTTCTATACAATATTAATAAATGGATTTTCAGCAATTTCAGAGTTTTCTGAACCACTTTTCGAATAACCACCAATTTTTTTTTGAATTTTGCCATTCCAMATTTTAAAAAGAATTTTTACCTCATTCCCTTCTCTCTCCTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAGTTCCATAGCATTATAATATTTTATTATATCCTTATCGTTGGATATAATCTTCGAGAACGTTTGATACGGCGGTTCTGGTGGTGGCACTCTTCTGATGACGTTGTGCTTGTCCATAAAGATTCCGGTGTCTCCGATTTTGATAATTCCCGGTGTCGTTTGGATATAGAATACTGGACAAACTCGCGCCAGCTTCTCTTGCCACGTTTCGACGTCTTCTTTTGGAGAAGGATCCGATGGGGTGGATTCTGAAGCATCCGGCTTGGCCACTTTCTCTTGGCCGGATTCTGAAGCAACCGGCTCCAGTCGTGTCGATCGCCTCTGCGTCGGCTCCTTCCTTGCTCTCTTAACAGGAGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>393 144 70 50 39 31 26 24 24 24 17 17 16 16 16 15 15 12 10 9 8 8 8 8</canonical_bands>
                <polymorphic_bands>393 144 70 50 39 31 27 26 24 24 24 17 17 16 16 16 15 10 9 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>216 177 93 70 50 39 31 30 26 24 17 17 16 16 16 16 15 15 15 12 12 10 9 9 9 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>216 177 93 70 50 39 31 30 27 26 24 17 17 16 16 16 16 15 15 12 10 9 9 9 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCAGAGTTTTCTGAACCAC</pcr_primer_p1>
		<pcr_primer_p2>ATCCAACGATAAGGATATAATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTTCAGAGTTTTCTGAACCACTTTTCGAATAACCACCAATTTTTTTTTGAATTTTGCCATTCCAAATTTTAAAAAGAATTTTTACCTCATTCCCTTCTCTCTCCTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAGTTCCATAGCATTATAATATTTTATTATATCCTTATCGTTGGAT</canonical_amplicon>
		<polymorphic_amplicon>ATTTCAGAGTTTTCTGAACCACTTTTCGAATAACCACCAATTTTTTTTTGAATTTTGCCATTCCAMATTTTAAAAAGAATTTTTACCTCATTCCCTTCTCTCTCCTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAGTTCCATAGCATTATAATATTTTATTATATCCTTATCGTTGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1408</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>381310</contig_pos>
        <strand>+</strand>
        <context>AATGGATGCA[C/T]CGAAAGAGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCGACAGCGATTGATGGAAAAAATGTGAAGCCGTGCGATGAATGGATGCA</left_flank>
        <right_flank>CGAAAGAGATGGTTGTATAGAAGAAGAATGCGGTGAATAGTTAAGGATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAATTCTGAAATTCGGAGATTTCGATATTCCGATATTCCGAAAATATGAGATTCTAAGATTCCAAAATTTTGAAATTCAAGATTTTGAAGATTTTGAAATTGCGAAGCTCTGAGATCCTTCAATTCTCCAATTCAAAAAATATCTTAATTTTCCAGCTACGAACTTGGCGGCGGTGCTGCTCATTTGATATCGGAAGACCGTGTTGATGATGGAAAAGAGCATAGTGTTCGTTTCGAACGAAAAGGAAGAGAAGGTCAAATGAAAATCGATAATTATCGAGAAATCAATGGAAGAAGTACCGGAATATTGGCAATGTTAAATGTGGATGGAAACATTTTTGTGGGCGGAGTTCCAGAAATTTCCAAAGCCACAGGCGGTCTTTTCTCGAATAACTTCGTTGGATGTATCGCTGACGTCGAGTTGAATGGAGTGAAATTGGATTTAATGGCGACAGCGATTGATGGAAAAAATGTGAAGCCGTGCGATGAATGGATGCACCGAAAGAGATGGTTGTATAGAAGAAGAATGCGGTGAATAGTTAAGGATGAGCAACGTTGGATTCTAGAAGATTTTTTTTTCAATTGCAAAACTGCCCGATTTCTGTGATAATTTATTTTCTTTCGCCTTCCTTTTTTTTCCTTTTTATATCTCATCTGGAAACCGAACGATTTCCAATTTTATTTACATTCAATTTCACGTTCAACTTTCCCCTTCTTTCCTCTGTCTTGATTCAACTGACTCATCAGAAGACAAAAAAAAAAGAAAAGAAAGTATCACTTTAAACCAAGTCTGCCCATGAAAAAAAGGGAAGTGGGGACATATAAAAGAAAGTCTGAAACAGGATATATATTGATATCTCTAACTACCATCGCCACCAAATTATATCGATGACGCCGATCTTAAACTTGCGCATCACTTCACTTTCCATCCCCATTCACATTACGAATATCTCCTCTTCTTCAAAAGATGAAGAAGACGACGGAGAGAATAAGATAATC</canonical>
            <polymorphic>GAAATTCTGAAATTCGGAGATTTCGATATTCCGATATTCCGAAAATATGAGATTCTAAGATTCCAAAATTTTGAAATTCAAGATTTTGAAGATTTTGAAATTGCGAAGCTCTGAGATCCTTCAATTCTCCAATTCAAAAAATATCTTAATTTTCCAGCTACGAACTTGGCGGCGGTGCTGCTCATTTGATATCGGAAGACCGTGTTGATGATGGAAAAGAGCATAGTGTTCGTTTCGAACGAAAAGGAAGAGAAGGTCAAATGAAAATCGATAATTATCGAGAAATCAATGGAAGAAGTACCGGAATATTGGCAATGTTAAATGTGGATGGAAACATTTTTGTGGGCGGAGTTCCAGAAATTTCCAAAGCCACAGGCGGTCTTTTCTCGAATAACTTCGTTGGATGTATCGCTGACGTCGAGTTGAATGGAGTGAAATTGGATTTAATGGCGACAGCGATTGATGGAAAAAATGTGAAGCCGTGCGATGAATGGATGCAYCGAAAGAGATGGTTGTATAGAAGAAGAATGCGGTGAATAGTTAAGGATGAGCAACGTTGGATTCTAGAAGATTTTTTTTTCAATTGCAAAACTGCCCGATTTCTGTGATAATTTATTTTCTTTCGCCTTCCTTTTTTTTCCTTTTTATATCTCATCTGGAAACCGAACGATTTCCAATTTTATTTACATTCAATTTCACGTTCAACTTTCCCCTTCTTTCCTCTGTCTTGATTCAACTGACTCATCAGAAGACAAAAAAAAAAGAAAAGAAAGTATCACTTTAAACCAAGTCTGCCCATGAAAAAAAGGGAAGTGGGGACATATAAAAGAAAGTCTGAAACAGGATATATATTGATATCTCTAACTACCATCGCCACCAAATTATATCGATGACGCCGATCTTAAACTTGCGCATCACTTCACTTTCCATCCCCATTCACATTACGAATATCTCCTCTTCTTCAAAAGATGAAGAAGACGACGGAGAGAATAAGATAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>177 98 91 80 72 62 61 61 42 41 37 36 28 27 24 18 17 15 8 5</canonical_bands>
                <polymorphic_bands>177 98 91 80 72 62 61 61 51 42 41 37 28 27 24 18 17 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGTCTTTTCTCGAATAACTT</pcr_primer_p1>
		<pcr_primer_p2>GCGAAAGAAAATAAATTATCACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGGTCTTTTCTCGAATAACTTCGTTGGATGTATCGCTGACGTCGAGTTGAATGGAGTGAAATTGGATTTAATGGCGACAGCGATTGATGGAAAAAATGTGAAGCCGTGCGATGAATGGATGCACCGAAAGAGATGGTTGTATAGAAGAAGAATGCGGTGAATAGTTAAGGATGAGCAACGTTGGATTCTAGAAGATTTTTTTTTCAATTGCAAAACTGCCCGATTTCTGTGATAATTTATTTTCTTTCGC</canonical_amplicon>
		<polymorphic_amplicon>CGGTCTTTTCTCGAATAACTTCGTTGGATGTATCGCTGACGTCGAGTTGAATGGAGTGAAATTGGATTTAATGGCGACAGCGATTGATGGAAAAAATGTGAAGCCGTGCGATGAATGGATGCAYCGAAAGAGATGGTTGTATAGAAGAAGAATGCGGTGAATAGTTAAGGATGAGCAACGTTGGATTCTAGAAGATTTTTTTTTCAATTGCAAAACTGCCCGATTTCTGTGATAATTTATTTTCTTTCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1409</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>115826</contig_pos>
        <strand></strand>
        <context>TACGGTACTC[A/T]TWACCTGTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCTTCTTTAGCTCAACTAGCAGTCATTCGCCATTTTTTCTACGGTACTC</left_flank>
        <right_flank>TTACCTGTGTAATCAGTAGAAATGTGTGGAACGCCTTTTTCATTAATCAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATTCTGAGAAAGAAAAAAAAGAGGAAAAAAGAAAAGGAAGAAGGTGGAGGAGGAGAAGAACACCTACATAAACATTCTTTTCTTTGTGCTTCCACTTGGATGAATCGCTTTCTGAAAGACTACCTGTCCATACTCGTCAAAGCTCCTTCACACTTTGATCTTTCTCTTTCTTCCATATTCTCAGCTTTTTTTTCTTTCCTGGTTGGGGTTTCCTTGTTTCCCCATAAACAAAAAAAAATAATCACAGTACTCCTATACAAGGTTTGTTATGAAACTATAATTTTTATAGAACTTTTTTTGTTGCTAGATTTGGTAACTTTTATCATCATTCTATAATTTAATCAAACCATGAAACATTGCTTTCTGATTGATTTCCAATAGAAATTTTCAAGTTGGTTTTCCAAGGGGTTCCGAAACTCCGTCAATAGTCCGTCGACGGCCTTTCGGTTCTTCTTTAGCTCAACTAGCAGTCATTCGCCATTTTTTCTACGGTACTCATTACCTGTGTAATCAGTAGAAATGTGTGGAACGCCTTTTTCATTAATCAGAATTTGGAATACTGAATCCGAATTAAGATAATGTTCTCGGAATCCGGAAAAATGAAAAGTTCACGTAATCCAGAAAACGGAATCCAGAATAAGAAATTCTGTCATTTCCAATGTGCAAGAAAATTCTGAAAAACACATATGATGCTTTATTTTTTTGATTAATAGTAGCTGAAGTTTAAGAATAATTATCGCGGTTGAGAATTCTTGCAAGATAACATACCGTAAACACCTTAGTAGAACGCCACCCAAACCGTAGACTTCGAGCCTAATTATCTCACTTCTTTTGAAAGATATCAAAAAGTTGTCAGCTAATAAAAAGTTTATCATGATATCAGCAACATTTTATTTATCACTTTTTTATAGCTCTCACAGTAAATGAGATACATGGACTCAAGTTTGACGATTCGGGTGGCATTAGAGTGTTTACGGTACCTGCTGAAAACCAGGGGT</canonical>
            <polymorphic>GCATTCTGAGAAAGAAAAAAAAGAGGAAAAAAGAAAAGGAAGAAGGTGGAGGAGGAGAAGAACACCTACATAAACATTCTTTTCTTTGTGCTTCCACTTGGATGAATCGCTTTCTGAAAGACTACCTGTCCATACTCGTCAAAGCTCCTTCACACTTTGATCTTTCTCTTTCTTCCATATTCTCAGCTTTTTTTTCTTTCCTGGTTGGGGTTTCCTTGTTTCCCCATAAACAAAAAAAAATAATCACAGTACTCCTATACAAGGTTTGTTATGAAACTATAATTTTTATAGAACTTTTTTTGTTGCTAGATTTGGTAACTTTTATCATCATTCTATAATTTAATCAAACCATGAAACATTGCTTTCTGATTGATTTCCAATAGAAATTTTCAAGTTGGTTTTCCAAGGGGTTCCGAAACTCCGTCAATAGTCCGTCGACGGCCTTTCGGTTCTTCTTTAGCTCAACTAGCAGTCATTCGCCATTTTTTCTACGGTACTCWTTACCTGTGTAATCAGTAGAAATGTGTGGAACGCCTTTTTCATTAATCAGAATTTGGAATACTGAATCCGAATTAAGATAATGTTCTCGGAATCCGGAAAAATGAAAAGTTCACGTAATCCAGAAAACGGAATCCAGAATAAGAAATTCTGTCATTTCCAATGTGCAAGAAAATTCTGAAAAACACATATGATGCTTTATTTTTTTGATTAATAGTAGCTGAAGTTTAAGAATAATTATCGCGGTTGAGAATTCTTGCAAGATAACATACCGTAAACACCTTAGTAGAACGCCACCCAAACCGTAGACTTCGAGCCTAATTATCTCACTTCTTTTGAAAGATATCAAAAAGTTGTCAGCTAATAAAAAGTTTATCATGATATCAGCAACATTTTATTTATCACTTTTTTATAGCTCTCACAGTAAATGAGATACATGGACTCAAGTTTGACGATTCGGGTGGCATTAGAGTGTTTACGGTACCTGCTGAAAACCAGGGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTTCTTCTTTAGCTCAACT</pcr_primer_p1>
		<pcr_primer_p2>ATCTTACCCCTGGTTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>559</pcr_amplicon_size>
		<canonical_amplicon>CGGTTCTTCTTTAGCTCAACTAGCAGTCATTCGCCATTTTTTCTACGGTACTCATTACCTGTGTAATCAGTAG</canonical_amplicon>
		<polymorphic_amplicon>CGGTTCTTCTTTAGCTCAACTAGCAGTCATTCGCCATTTTTTCTACGGTACTCWTTACCTGTGTAATCAGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1410</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>201807</contig_pos>
        <strand>+</strand>
        <context>CTTTACAAGT[A/G]AGTGATTAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGTCCGGACTCACAGTCTCATATTGGGATATCAACGCAACTTTACAAGT</left_flank>
        <right_flank>AGTGATTAAAATAATCTTGTTTATATTGCTATATTACATCCTGCAAAACA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCGGAAGAAGTGCTGGAACATTACAGTCTCAGTTCGTTGGAGAAAAGTGTGCTGAATGGATCGATAGGTTTCTAACTTTGACTTTACTGTCTTCCATTCTTCTATTTCCAGGACTTGTCTGGTTACTCACAAGTTGGTATCCGAAGTTTGCGAATACTTCGACAGCTTAGATCAGATCATCGATCTTCTCCAAGCAATCACCTTGTCCCTGAAGCAAGATTGGCCGAAAATCGGATCTAACCGAACTGTTTATGAAAAACTTCTTCAGACCGCAGTAGTGGATAAAGCACAGGTTTGTGTAAAAAGTGAAATATTTCATTAAAAAAATAATTATGATGTTTCAGGTGCTACTAGTTCAAATGATAGAATCAATTGAAATTGCTGCGAAGAAAAGATTCGAATCCACAAGTGACGGGCCTTCAACTGCTATCTTTGATGAACGCACTTATCGTCCGGACTCACAGTCTCATATTGGGATATCAACGCAACTTTACAAGTAAGTGATTAAAATAATCTTGTTTATATTGCTATATTACATCCTGCAAAACATAATGAGACCTAGAAAAGTATTGTGTTTTGTACTGACTAGAAAAGCATGTTTCAATCTCCAAATTATCAAAGAAATAAATATAAAACTCTGAAACCTGAACTGATATGTTAGGTTAGTTAATTGATCTCCTTCATATAGCTTCCATCATTTAGATGCGTCAAAACTCTATGGGAATCGCTTGAACAACTGAACGAAAAGTGCTCTCAATTCGAAACAATTTGTGCTCCAATGGCAGATACAAAAATTGCTAGCGCAATGAAGGAAAAGATGGCAACGAATGTTCTACAATTACTACTCCGTTTATGCGAACTTCATTCGGATCAACAAAATGAGTCGACGAGAAGTTTGTCTAGAGCTCGATTGGCTTTGGCTCTCGTTCACTCAGAATCTACACTGATCAGCACTCTCCTCGACAAAGACTCACAACGCATAACGTCTCTCAATCAACG</canonical>
            <polymorphic>AGCGGAAGAAGTGCTGGAACATTACAGTCTCAGTTCGTTGGAGAAAAGTGTGCTGAATGGATCGATAGGTTTCTAACTTTGACTTTACTGTCTTCCATTCTTCTATTTCCAGGACTTGTCTGGTTACTCACAAGTTGGTATCCGAAGTTTGCGAATACTTCGACAGCTTAGATCAGATCATCGATCTTCTCCAAGCAATCACCTTGTCCCTGAAGCAAGATTGGCCGAAAATCGGATCTAACCGAACTGTTTATGAAAAACTTCTTCAGACCGCAGTAGTGGATAAAGCACAGGTTTGTGTAAAAAGTGAAATATTTCATTAAAAAAATAATTATGATGTTTCAGGTGCTACTAGTTCAAATGATAGAATCAATTGAAATTGCTGCGAAGAAAAGATTCGAATCCACAAGTGACGGGCCTTCAACTGCTATCTTTGATGAACGCACTTATCGTCCGGACTCACAGTCTCATATTGGGATATCAACGCAACTTTACAAGTRAGTGATTAAAATAATCTTGTTTATATTGCTATATTACATCCTGCAAAACATAATGAGACCTAGAAAAGTATTGTGTTTTGTACTGACTAGAAAAGCATGTTTCAATCTCCAAATTATCAAAGAAATAAATATAAAACTCTGAAACCTGAACTGATATGTTAGGTTAGTTAATTGATCTCCTTCATATAGCTTCCATCATTTAGATGCGTCAAAACTCTATGGGAATCGCTTGAACAACTGAACGAAAAGTGCTCTCAATTCGAAACAATTTGTGCTCCAATGGCAGATACAAAAATTGCTAGCGCAATGAAGGAAAAGATGGCAACGAATGTTCTACAATTACTACTCCGTTTATGCGAACTTCATTCGGATCAACAAAATGAGTCGACGAGAAGTTTGTCTAGAGCTCGATTGGCTTTGGCTCTCGTTCACTCAGAATCTACACTGATCAGCACTCTCCTCGACAAAGACTCACAACGCATAACGTCTCTCAATCAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTATGATGTTTCAGGTGCTACT</pcr_primer_p1>
		<pcr_primer_p2>CAAAACACAATACTTTTCTAGGTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTATGATGTTTCAGGTGCTACTAGTTCAAATGATAGAATCAATTGAAATTGCTGCGAAGAAAAGATTCGAATCCACAAGTGACGGGCCTTCAACTGCTATCTTTGATGAACGCACTTATCGTCCGGACTCACAGTCTCATATTGGGATATCAACGCAACTTTACAAGTAAGTGATTAAAATAATCTTGTTTATATTGCTATATTACATCCTGCAAAACATAATGAGACCTAGAAAAGTATTGTGTTTTG</canonical_amplicon>
		<polymorphic_amplicon>ATTATGATGTTTCAGGTGCTACTAGTTCAAATGATAGAATCAATTGAAATTGCTGCGAAGAAAAGATTCGAATCCACAAGTGACGGGCCTTCAACTGCTATCTTTGATGAACGCACTTATCGTCCGGACTCACAGTCTCATATTGGGATATCAACGCAACTTTACAAGTRAGTGATTAAAATAATCTTGTTTATATTGCTATATTACATCCTGCAAAACATAATGAGACCTAGAAAAGTATTGTGTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1411</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>201849</contig_pos>
        <strand>+</strand>
        <context>TATTACATCC[C/T]GCAAAACATA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTACAAGTAAGTGATTAAAATAATCTTGTTTATATTGCTATATTACATCC</left_flank>
        <right_flank>GCAAAACATAATGAGACCTAGAAAAGTATTGTGTTTTGTACTGACTAGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAGTGTGCTGAATGGATCGATAGGTTTCTAACTTTGACTTTACTGTCTTCCATTCTTCTATTTCCAGGACTTGTCTGGTTACTCACAAGTTGGTATCCGAAGTTTGCGAATACTTCGACAGCTTAGATCAGATCATCGATCTTCTCCAAGCAATCACCTTGTCCCTGAAGCAAGATTGGCCGAAAATCGGATCTAACCGAACTGTTTATGAAAAACTTCTTCAGACCGCAGTAGTGGATAAAGCACAGGTTTGTGTAAAAAGTGAAATATTTCATTAAAAAAATAATTATGATGTTTCAGGTGCTACTAGTTCAAATGATAGAATCAATTGAAATTGCTGCGAAGAAAAGATTCGAATCCACAAGTGACGGGCCTTCAACTGCTATCTTTGATGAACGCACTTATCGTCCGGACTCACAGTCTCATATTGGGATATCAACGCAACTTTACAAGTAAGTGATTAAAATAATCTTGTTTATATTGCTATATTACATCCTGCAAAACATAATGAGACCTAGAAAAGTATTGTGTTTTGTACTGACTAGAAAAGCATGTTTCAATCTCCAAATTATCAAAGAAATAAATATAAAACTCTGAAACCTGAACTGATATGTTAGGTTAGTTAATTGATCTCCTTCATATAGCTTCCATCATTTAGATGCGTCAAAACTCTATGGGAATCGCTTGAACAACTGAACGAAAAGTGCTCTCAATTCGAAACAATTTGTGCTCCAATGGCAGATACAAAAATTGCTAGCGCAATGAAGGAAAAGATGGCAACGAATGTTCTACAATTACTACTCCGTTTATGCGAACTTCATTCGGATCAACAAAATGAGTCGACGAGAAGTTTGTCTAGAGCTCGATTGGCTTTGGCTCTCGTTCACTCAGAATCTACACTGATCAGCACTCTCCTCGACAAAGACTCACAACGCATAACGTCTCTCAATCAACGACTCCATGCAATAATTGAGAAGAATCTTGTGTAAGTGAAATT</canonical>
            <polymorphic>GAAAAGTGTGCTGAATGGATCGATAGGTTTCTAACTTTGACTTTACTGTCTTCCATTCTTCTATTTCCAGGACTTGTCTGGTTACTCACAAGTTGGTATCCGAAGTTTGCGAATACTTCGACAGCTTAGATCAGATCATCGATCTTCTCCAAGCAATCACCTTGTCCCTGAAGCAAGATTGGCCGAAAATCGGATCTAACCGAACTGTTTATGAAAAACTTCTTCAGACCGCAGTAGTGGATAAAGCACAGGTTTGTGTAAAAAGTGAAATATTTCATTAAAAAAATAATTATGATGTTTCAGGTGCTACTAGTTCAAATGATAGAATCAATTGAAATTGCTGCGAAGAAAAGATTCGAATCCACAAGTGACGGGCCTTCAACTGCTATCTTTGATGAACGCACTTATCGTCCGGACTCACAGTCTCATATTGGGATATCAACGCAACTTTACAAGTAAGTGATTAAAATAATCTTGTTTATATTGCTATATTACATCCYGCAAAACATAATGAGACCTAGAAAAGTATTGTGTTTTGTACTGACTAGAAAAGCATGTTTCAATCTCCAAATTATCAAAGAAATAAATATAAAACTCTGAAACCTGAACTGATATGTTAGGTTAGTTAATTGATCTCCTTCATATAGCTTCCATCATTTAGATGCGTCAAAACTCTATGGGAATCGCTTGAACAACTGAACGAAAAGTGCTCTCAATTCGAAACAATTTGTGCTCCAATGGCAGATACAAAAATTGCTAGCGCAATGAAGGAAAAGATGGCAACGAATGTTCTACAATTACTACTCCGTTTATGCGAACTTCATTCGGATCAACAAAATGAGTCGACGAGAAGTTTGTCTAGAGCTCGATTGGCTTTGGCTCTCGTTCACTCAGAATCTACACTGATCAGCACTCTCCTCGACAAAGACTCACAACGCATAACGTCTCTCAATCAACGACTCCATGCAATAATTGAGAAGAATCTTGTGTAAGTGAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>501 465 34</canonical_bands>
                <polymorphic_bands>966 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCACAGTCTCATATTGGGATA</pcr_primer_p1>
		<pcr_primer_p2>GCATCTAAATGATGGAAGCTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTCACAGTCTCATATTGGGATATCAACGCAACTTTACAAGTAAGTGATTAAAATAATCTTGTTTATATTGCTATATTACATCCTGCAAAACATAATGAGACCTAGAAAAGTATTGTGTTTTGTACTGACTAGAAAAGCATGTTTCAATCTCCAAATTATCAAAGAAATAAATATAAAACTCTGAAACCTGAACTGATATGTTAGGTTAGTTAATTGATCTCCTTCATATAGCTTCCATCATTTAGATGC</canonical_amplicon>
		<polymorphic_amplicon>ACTCACAGTCTCATATTGGGATATCAACGCAACTTTACAAGTAAGTGATTAAAATAATCTTGTTTATATTGCTATATTACATCCYGCAAAACATAATGAGACCTAGAAAAGTATTGTGTTTTGTACTGACTAGAAAAGCATGTTTCAATCTCCAAATTATCAAAGAAATAAATATAAAACTCTGAAACCTGAACTGATATGTTAGGTTAGTTAATTGATCTCCTTCATATAGCTTCCATCATTTAGATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1412</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>205032</contig_pos>
        <strand>+</strand>
        <context>TGCTACAGTA[A/G]CTCCTCGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACGGAACTGTTCATAGTCTTCAGAAATACAGTTGAGCATGCTACAGTA</left_flank>
        <right_flank>CTCCTCGATTCTACGAAGAAGCCAAAATGTATTATATATGTTTTGAAATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATGGTCGAGGACATTTTGACTGTGGTTGGTGTTAGTTAAAACGGGAGTGAAGTGACTGGAGTGGTGCGCAATAGGAGGGATCTACTGAACGGGGCCACGACACCGAAGGGGGAAAACGGGAGAAGAGACCATTGAAGACATTCAGTCAGTAGTTGGCTGGCGCTGCACGAACAGGTCTCTCCTTCCATCTCTTTCGGAAACTTCTCATTTTGCGCGATCTCTCCCTTCTACCGCACTACTCACGGTCCTCGAGAGAGACTATTCAAAGAGAGAGCGAGGCGATACACGAAAGAAAAGACTCACTTTCGCGTCCCTTTCTTGTCCCGATCCGTATTTAATTGCAGACTGTATTCGAAATGGGTTACTCCGAAAGGTGGTCCACTAGTTACGATTACCGTATAATTTAAACAACTAGGCGTATGGGAATATATGGGACGAGATTCTAGGAAACGGAACTGTTCATAGTCTTCAGAAATACAGTTGAGCATGCTACAGTAACTCCTCGATTCTACGAAGAAGCCAAAATGTATTATATATGTTTTGAAATAGAATACGTTTAGAAAAAAGTTTTTCTAAATGTATAGCAAGGACCTGACACTCTCTGAACATTTCTTTGGCATCACGGGACAAACTAAGTTGAAGACCAGATGCGCGAAATTTCTGCTGCTGCTGCTGGCAAGGTACACGGTGTTTGTCCATGACACATGTATGAATCACGACTAACTACAAATTCGAAAACGGAACCATAACATTCGGAGCCATTAGATATTGAAAGCAGAAGTGGACAAGTGGCTCAAAATTGTTGCCAATTAGGGGCGTGTTCTTTTTTTACCGGTTACGTTCCGATTCTCCTCCTCTCCTGACTGCTCTCAGTCTCCATTTCTCACTCGTTCTTTTCCGCTACGAAATAGGCAGTTGGGGCACAAAAAAGAGATGGGCGCCAGGCCAGTATCGATGATCGACGTCGATAGCAGCAATAAATGGCAACATTTTTGGAA</canonical>
            <polymorphic>GGATGGTCGAGGACATTTTGACTGTGGTTGGTGTTAGTTAAAACGGGAGTGAAGTGACTGGAGTGGTGCGCAATAGGAGGGATCTACTGAACGGGGCCACGACACCGAAGGGGGAAAACGGGAGAAGAGACCATTGAAGACATTCAGTCAGTAGTTGGCTGGCGCTGCACGAACAGGTCTCTCCTTCCATCTCTTTCGGAAACTTCTCATTTTGCGCGATCTCTCCCTTCTACCGCACTACTCACGGTCCTCGAGAGAGACTATTCAAAGAGAGAGCGAGGCGATACACGAAAGAAAAGACTCACTTTCGCGTCCCTTTCTTGTCCCGATCCGTATTTAATTGCAGACTGTATTCGAAATGGGTTACTCCGAAAGGTGGTCCACTAGTTACGATTACCGTATAATTTAAACAACTAGGCGTATGGGAATATATGGGACGAGATTCTAGGAAACGGAACTGTTCATAGTCTTCAGAAATACAGTTGAGCATGCTACAGTARCTCCTCGATTCTACGAAGAAGCCAAAATGTATTATATATGTTTTGAAATAGAATACGTTTAGAAAAAAGTTTTTCTAAATGTATAGCAAGGACCTGACACTCTCTGAACATTTCTTTGGCATCACGGGACAAACTAAGTTGAAGACCAGATGCGCGAAATTTCTGCTGCTGCTGCTGGCAAGGTACACGGTGTTTGTCCATGACACATGTATGAATCACGACTAACTACAAATTCGAAAACGGAACCATAACATTCGGAGCCATTAGATATTGAAAGCAGAAGTGGACAAGTGGCTCAAAATTGTTGCCAATTAGGGGCGTGTTCTTTTTTTACCGGTTACGTTCCGATTCTCCTCCTCTCCTGACTGCTCTCAGTCTCCATTTCTCACTCGTTCTTTTCCGCTACGAAATAGGCAGTTGGGGCACAAAAAAGAGATGGGCGCCAGGCCAGTATCGATGATCGACGTCGATAGCAGCAATAAATGGCAACATTTTTGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>340 309 164 110 53 24</canonical_bands>
                <polymorphic_bands>450 309 164 53 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTAAACAACTAGGCGTATGG</pcr_primer_p1>
		<pcr_primer_p2>TCTGGTCTTCAACTTAGTTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTTAAACAACTAGGCGTATGGGAATATATGGGACGAGATTCTAGGAAACGGAACTGTTCATAGTCTTCAGAAATACAGTTGAGCATGCTACAGTAACTCCTCGATTCTACGAAGAAGCCAAAATGTATTATATATGTTTTGAAATAGAATACGTTTAGAAAAAAGTTTTTCTAAATGTATAGCAAGGACCTGACACTCTCTGAACATTTCTTTGGCATCACGGGACAAACTAAGTTGAAGACCAGA</canonical_amplicon>
		<polymorphic_amplicon>ATTTAAACAACTAGGCGTATGGGAATATATGGGACGAGATTCTAGGAAACGGAACTGTTCATAGTCTTCAGAAATACAGTTGAGCATGCTACAGTARCTCCTCGATTCTACGAAGAAGCCAAAATGTATTATATATGTTTTGAAATAGAATACGTTTAGAAAAAAGTTTTTCTAAATGTATAGCAAGGACCTGACACTCTCTGAACATTTCTTTGGCATCACGGGACAAACTAAGTTGAAGACCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1413</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>289331</contig_pos>
        <strand>+</strand>
        <context>AATTAGAGAT[A/T]AACGTCCCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATAGAGGACGTTGCGTGTTCGGTTCTTTGGGATTTGAATCAATTAGAGAT</left_flank>
        <right_flank>AACGTCCCATTTGAAAAGAACTAGTTAATTGAGGTCGGAGCAGTCAAGAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGAGAGAGCATTCCCTTGGTTTATCCGATCGACCACACAAGAGAGCTCGGGATGATTTACATATTTCACACTATCCCTGTCACTCTGTTTCGGACTTCTTCTCCAAAATTTGCCCTTTTTCGAATTGTTTATGAATATAAACTGCAGTCCGATTGTCGTTGACATGACAGGAAGGGAAGAATCGTTTCTGTCACAGGATTAGGCAACCCAGGTGGTCCGTTGTCTCTTCTTCAGAAAATACATCTTGTCACATTTCCAAAAGTTTTGGTAGAGATAGCCATCCACTGTGCTCTGTCCATCTCATTTTGTACAGGGCTCTCCATACAGTCATTACAAATTCTTCCTTTGATCCTTCCGCTTCCTTTTTTCTTTGTTCACACCATTTCAGCCTTTTCTTTTGGGTATCACAAATGTTAATCCGAAAATTGCAGGTAGATCTTTTTTCCGATAGAGGACGTTGCGTGTTCGGTTCTTTGGGATTTGAATCAATTAGAGATAAACGTCCCATTTGAAAAGAACTAGTTAATTGAGGTCGGAGCAGTCAAGAGCATGGGAAAGATGTCAGTATTATTTTGTTGTTAATGGTAAATAGCAGTATTAAAATAAGCAAATTGGGACCAGTTAGATTTTCGAACTATCGTGTTTTCTCTAATTCTATTATAGCTCATCCGAACAGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGGTATCGAAAAATGGTAAACTAACAAAATAATTATCATAATACCAGCAATATTTAATCGGGTGACACATTTTTGATACCGTTGGCAGAGGATGAGATATATGGGCACAAAGTTGACGGTATGGGAATTCGGCAATTGCTGGAAACAGAACCCCATAAGTCACTCAGACTTTTCAGTATTTCAGAAGGCTTTCCAGTTTTTAGAAACACATTGAGACCCACATTAACAGATATTGTAGATAATTGAACAAATTTTAGGTATATGTGTACATATCTGGTAGTTTAAAT</canonical>
            <polymorphic>CGAGAGAGAGCATTCCCTTGGTTTATCCGATCGACCACACAAGAGAGCTCGGGATGATTTACATATTTCACACTATCCCTGTCACTCTGTTTCGGACTTCTTCTCCAAAATTTGCCCTTTTTCGAATTGTTTATGAATATAAACTGCAGTCCGATTGTCGTTGACATGACAGGAAGGGAAGAATCGTTTCTGTCACAGGATTAGGCAACCCAGGTGGTCCGTTGTCTCTTCTTCAGAAAATACATCTTGTCACATTTCCAAAAGTTTTGGTAGAGATAGCCATCCACTGTGCTCTGTCCATCTCATTTTGTACAGGGCTCTCCATACAGTCATTACAAATTCTTCCTTTGATCCTTCCGCTTCCTTTTTTCTTTGTTCACACCATTTCAGCCTTTTCTTTTGGGTATCACAAATGTTAATCCGAAAATTGCAGGTAGATCTTTTTTCCGATAGAGGACGTTGCGTGTTCGGTTCTTTGGGATTTGAATCAATTAGAGATWAACGTCCCATTTGAAAAGAACTAGTTAATTGAGGTCGGAGCAGTCAAGAGCATGGGAAAGATGTCAGTATTATTTTGTTGTTAATGGTAAATAGCAGTATTAAAATAAGCAAATTGGGACCAGTTAGATTTTCGAACTATCGTGTTTTCTCTAATTCTATTATAGCTCATCCGAACAGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGGTATCGAAAAATGGTAAACTAACAAAATAATTATCATAATACCAGCAATATTTAATCGGGTGACACATTTTTGATACCGTTGGCAGAGGATGAGATATATGGGCACAAAGTTGACGGTATGGGAATTCGGCAATTGCTGGAAACAGAACCCCATAAGTCACTCAGACTTTTCAGTATTTCAGAAGGCTTTCCAGTTTTTAGAAACACATTGAGACCCACATTAACAGATATTGTAGATAATTGAACAAATTTTAGGTATATGTGTACATATCTGGTAGTTTAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGGGTATCACAAATGTTAAT</pcr_primer_p1>
		<pcr_primer_p2>AAACACGATAGTTCGAAAATCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTGGGTATCACAAATGTTAATCCGAAAATTGCAGGTAGATCTTTTTTCCGATAGAGGACGTTGCGTGTTCGGTTCTTTGGGATTTGAATCAATTAGAGATAAACGTCCCATTTGAAAAGAACTAGTTAATTGAGGTCGGAGCAGTCAAGAGCATGGGAAAGATGTCAGTATTATTTTGTTGTTAATGGTAAATAGCAGTATTAAAATAAGCAAATTGGGACCAGTTAGATTTTCGAACTATCGTGTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGGGTATCACAAATGTTAATCCGAAAATTGCAGGTAGATCTTTTTTCCGATAGAGGACGTTGCGTGTTCGGTTCTTTGGGATTTGAATCAATTAGAGATWAACGTCCCATTTGAAAAGAACTAGTTAATTGAGGTCGGAGCAGTCAAGAGCATGGGAAAGATGTCAGTATTATTTTGTTGTTAATGGTAAATAGCAGTATTAAAATAAGCAAATTGGGACCAGTTAGATTTTCGAACTATCGTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1414</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>292830</contig_pos>
        <strand>+</strand>
        <context>TAGCATTCAT[A/T]ATATAAGCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCTGACCTCAAACCTTCTAGGGAACTGTAATTTATGTCTTAGCATTCAT</left_flank>
        <right_flank>ATATAAGCCGTAGTAAAACGAGGAAAAGAGCCGAAAATTGGGGTTACGGA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGAATGGTCCTCCTCCCAGAAGTTCTCCCTGATCCTCATGTTTCCCATTCATGGCCAAAAGTTTTGGTTTCGAGATTTGAGAGTATCCAAAATGGACATTATGCACTTGAAACAGAAGAAAAGAGGGGGGCCTTATGCAAATTTGATTGACATCATTCTCGATTCTATGCATAGAAAAAAATTTTCGAGACGAAGAACAAGTCCATAGGGAACAGCTTGAAAAGTCATCGGTTTTCTCGGGGAGAAAAGAAATGTTCCCGAACCTCAAATTGTCAACTTCGCCCGGGGAAATGATAGATGTGTTACAAAACTAAATTGTTTTTCTTTCGGTGATTTTTAGATACGTCCCAACGGAGGTTCAATTGTTTCAAATTCTAAGGCGAGAGAGGGAGAGCACATCCTTTTTTATTTGGGGAAAGAAATGACGCAACCCGCTAATTATGGATGACCTGACCTCAAACCTTCTAGGGAACTGTAATTTATGTCTTAGCATTCATTATATAAGCCGTAGTAAAACGAGGAAAAGAGCCGAAAATTGGGGTTACGGAGAAGAAATTTTGTGGAGCAACAGGAAGAAGAAAACATCTGCTGAGATTTGAAAAAATAATTCTGCTTGGTCCCTAAAATAGAGTCTAATAAAATCCCTAACTTTCAACTTTAAGCCTATATATCTCGATTCTTGTGAAAGATATCAAAAAGTGGTCCACTGACAAAATATTTTTGATATTATGATAAACATTTTATCAGTTGACTAATAATTGGTATCTTTTACAGGGAATGAGATGTATGGGTTCAAAATTGACGGTTTGGGTGACGCTTTAAAATAGTGTTTGTGGTAGATTCTGGACTTCTTTGAACTCAACAAATTGATGTTATAACTAACAATTTGAATTTTTCATATAAGAATTTTATCAATACCATAAAAAATTTCTTCAGATCTCGAACAGCTGATCCTCAAGAACAACTCCATAACACATTTGTCAGCTGATGTTTTCTCG</canonical>
            <polymorphic>TTAGAATGGTCCTCCTCCCAGAAGTTCTCCCTGATCCTCATGTTTCCCATTCATGGCCAAAAGTTTTGGTTTCGAGATTTGAGAGTATCCAAAATGGACATTATGCACTTGAAACAGAAGAAAAGAGGGGGGCCTTATGCAAATTTGATTGACATCATTCTCGATTCTATGCATAGAAAAAAATTTTCGAGACGAAGAACAAGTCCATAGGGAACAGCTTGAAAAGTCATCGGTTTTCTCGGGGAGAAAAGAAATGTTCCCGAACCTCAAATTGTCAACTTCGCCCGGGGAAATGATAGATGTGTTACAAAACTAAATTGTTTTTCTTTCGGTGATTTTTAGATACGTCCCAACGGAGGTTCAATTGTTTCAAATTCTAAGGCGAGAGAGGGAGAGCACATCCTTTTTTATTTGGGGAAAGAAATGACGCAACCCGCTAATTATGGATGACCTGACCTCAAACCTTCTAGGGAACTGTAATTTATGTCTTAGCATTCATWATATAAGCCGTAGTAAAACGAGGAAAAGAGCCGAAAATTGGGGTTACGGAGAAGAAATTTTGTGGAGCAACAGGAAGAAGAAAACATCTGCTGAGATTTGAAAAAATAATTCTGCTTGGTCCCTAAAATAGAGTCTAATAAAATCCCTAACTTTCAACTTTAAGCCTATATATCTCGATTCTTGTGAAAGATATCAAAAAGTGGTCCACTGACAAAATATTTTTGATATTATGATAAACATTTTATCAGTTGACTAATAATTGGTATCTTTTACAGGGAATGAGATGTATGGGTTCAAAATTGACGGTTTGGGTGACGCTTTAAAATAGTGTTTGTGGTAGATTCTGGACTTCTTTGAACTCAACAAATTGATGTTATAACTAACAATTTGAATTTTTCATATAAGAATTTTATCAATACCATAAAAAATTTCTTCAGATCTCGAACAGCTGATCCTCAAGAACAACTCCATAACACATTTGTCAGCTGATGTTTTCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGTTCAATTGTTTCAAATTCTA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCAAATCTCAGCAGATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGGTTCAATTGTTTCAAATTCTAAGGCGAGAGAGGGAGAGCACATCCTTTTTTATTTGGGGAAAGAAATGACGCAACCCGCTAATTATGGATGACCTGACCTCAAACCTTCTAGGGAACTGTAATTTATGTCTTAGCATTCATTATATAAGCCGTAGTAAAACGAGGAAAAGAGCCGAAAATTGGGGTTACGGAGAAGAAATTTTGTGGAGCAACAGGAAGAAGAAAACATCTGCTGAGATTTGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AGGTTCAATTGTTTCAAATTCTAAGGCGAGAGAGGGAGAGCACATCCTTTTTTATTTGGGGAAAGAAATGACGCAACCCGCTAATTATGGATGACCTGACCTCAAACCTTCTAGGGAACTGTAATTTATGTCTTAGCATTCATWATATAAGCCGTAGTAAAACGAGGAAAAGAGCCGAAAATTGGGGTTACGGAGAAGAAATTTTGTGGAGCAACAGGAAGAAGAAAACATCTGCTGAGATTTGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1415</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>293203</contig_pos>
        <strand>+</strand>
        <context>AACAAATTGA[A/T]GTTATAACTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATAGTGTTTGTGGTAGATTCTGGACTTCTTTGAACTCAACAAATTGA</left_flank>
        <right_flank>GTTATAACTAACAATTTGAATTTTTCATATAAGAATTTTATCAATACCAT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTAAGGCGAGAGAGGGAGAGCACATCCTTTTTTATTTGGGGAAAGAAATGACGCAACCCGCTAATTATGGATGACCTGACCTCAAACCTTCTAGGGAACTGTAATTTATGTCTTAGCATTCATTATATAAGCCGTAGTAAAACGAGGAAAAGAGCCGAAAATTGGGGTTACGGAGAAGAAATTTTGTGGAGCAACAGGAAGAAGAAAACATCTGCTGAGATTTGAAAAAATAATTCTGCTTGGTCCCTAAAATAGAGTCTAATAAAATCCCTAACTTTCAACTTTAAGCCTATATATCTCGATTCTTGTGAAAGATATCAAAAAGTGGTCCACTGACAAAATATTTTTGATATTATGATAAACATTTTATCAGTTGACTAATAATTGGTATCTTTTACAGGGAATGAGATGTATGGGTTCAAAATTGACGGTTTGGGTGACGCTTTAAAATAGTGTTTGTGGTAGATTCTGGACTTCTTTGAACTCAACAAATTGATGTTATAACTAACAATTTGAATTTTTCATATAAGAATTTTATCAATACCATAAAAAATTTCTTCAGATCTCGAACAGCTGATCCTCAAGAACAACTCCATAACACATTTGTCAGCTGATGTTTTCTCGACTCTTCCTCATCTACGTTTATTGGATCTCTCTTCAAACAGTCTATTGTCACTGCCAAATGAGGTGTTCTCGAAACTGAAAAATCTGAAGGTAAGTCATTGCATCAGTTGACTCGATTAGGCTTCATCGTCTTCTTAATTATTAATTAGGTTGACAGCATCTCAGAAGCCAAGGGAAGGCGATAACTTGATTGACACATGATTTCCGTATGTTAATGAGTAGGTAATAGGGAAAAGGACATCTGTCTTCGAATTCAGTCAAGCCATCCTTCTTTTCGCTTGACAGATGTCTTCGTCTGCCCCTCATTCTTAACAAAAACCCAGAAATAGGAGGAGACAATGAGTACAATTGGATCTGTCCTAATTAATTGAAA</canonical>
            <polymorphic>ATTCTAAGGCGAGAGAGGGAGAGCACATCCTTTTTTATTTGGGGAAAGAAATGACGCAACCCGCTAATTATGGATGACCTGACCTCAAACCTTCTAGGGAACTGTAATTTATGTCTTAGCATTCATTATATAAGCCGTAGTAAAACGAGGAAAAGAGCCGAAAATTGGGGTTACGGAGAAGAAATTTTGTGGAGCAACAGGAAGAAGAAAACATCTGCTGAGATTTGAAAAAATAATTCTGCTTGGTCCCTAAAATAGAGTCTAATAAAATCCCTAACTTTCAACTTTAAGCCTATATATCTCGATTCTTGTGAAAGATATCAAAAAGTGGTCCACTGACAAAATATTTTTGATATTATGATAAACATTTTATCAGTTGACTAATAATTGGTATCTTTTACAGGGAATGAGATGTATGGGTTCAAAATTGACGGTTTGGGTGACGCTTTAAAATAGTGTTTGTGGTAGATTCTGGACTTCTTTGAACTCAACAAATTGAWGTTATAACTAACAATTTGAATTTTTCATATAAGAATTTTATCAATACCATAAAAAATTTCTTCAGATCTCGAACAGCTGATCCTCAAGAACAACTCCATAACACATTTGTCAGCTGATGTTTTCTCGACTCTTCCTCATCTACGTTTATTGGATCTCTCTTCAAACAGTCTATTGTCACTGCCAAATGAGGTGTTCTCGAAACTGAAAAATCTGAAGGTAAGTCATTGCATCAGTTGACTCGATTAGGCTTCATCGTCTTCTTAATTATTAATTAGGTTGACAGCATCTCAGAAGCCAAGGGAAGGCGATAACTTGATTGACACATGATTTCCGTATGTTAATGAGTAGGTAATAGGGAAAAGGACATCTGTCTTCGAATTCAGTCAAGCCATCCTTCTTTTCGCTTGACAGATGTCTTCGTCTGCCCCTCATTCTTAACAAAAACCCAGAAATAGGAGGAGACAATGAGTACAATTGGATCTGTCCTAATTAATTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTGGTCCCTAAAATAGAGTC</pcr_primer_p1>
		<pcr_primer_p2>TTATGGAGTTGTTCTTGAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>361</pcr_amplicon_size>
		<canonical_amplicon>GCTTGGTCCCTAAAATAGAGTCTAATAAAATCCCTAACTTTCAACTTTAAGCCTATATATCTCGATTCTTGTGAAAGATATCAAAAAGTGGTCCACTGACAAAATATTTTTGATATTATGATAAACATTTTATCAGTTGACTAATAATTGGTATCTTTTACAGGGAATGAGATGTATGGGTTCAAAATTGACGGTTTGGGTGACGCTTTAAAATAGTGTTTGTGGTAGATTCTGGACTTCTTTGAACTCAACAAATTGATGTTATAACTAACAATTTGAATTTTTCATATAAGAATTTTATCAATACCATAAAAAATTTCTTCAGATCTCGAACAGCTGATCCTCAAGAACAACTCCATAA</canonical_amplicon>
		<polymorphic_amplicon>GCTTGGTCCCTAAAATAGAGTCTAATAAAATCCCTAACTTTCAACTTTAAGCCTATATATCTCGATTCTTGTGAAAGATATCAAAAAGTGGTCCACTGACAAAATATTTTTGATATTATGATAAACATTTTATCAGTTGACTAATAATTGGTATCTTTTACAGGGAATGAGATGTATGGGTTCAAAATTGACGGTTTGGGTGACGCTTTAAAATAGTGTTTGTGGTAGATTCTGGACTTCTTTGAACTCAACAAATTGAWGTTATAACTAACAATTTGAATTTTTCATATAAGAATTTTATCAATACCATAAAAAATTTCTTCAGATCTCGAACAGCTGATCCTCAAGAACAACTCCATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1416</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>293151</contig_pos>
        <strand>+</strand>
        <context>gggtgACGCT[A/T]TAAAATAGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTACAGGGAATGAGATGTATGGGTTCAAAATTGACGGTTTGGGTGACGCT</left_flank>
        <right_flank>TAAAATAGTGTTTGTGGTAGATTCTGGACTTCTTTGAACTCAACAAATTG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCTTTCGGTGATTTTTAGATACGTCCCAACGGAGGTTCAATTGTTTCAAATTCTAAGGCGAGAGAGGGAGAGCACATCCTTTTTTATTTGGGGAAAGAAATGACGCAACCCGCTAATTATGGATGACCTGACCTCAAACCTTCTAGGGAACTGTAATTTATGTCTTAGCATTCATTATATAAGCCGTAGTAAAACGAGGAAAAGAGCCGAAAATTGGGGTTACGGAGAAGAAATTTTGTGGAGCAACAGGAAGAAGAAAACATCTGCTGAGATTTGAAAAAATAATTCTGCTTGGTCCCTAAAATAGAGTCTAATAAAATCCCTAACTTTCAACTTTAAGCCTATATATCTCGATTCTTGTGAAAGATATCAAAAAGTGGTCCACTGACAAAATATTTTTGATATTATGATAAACATTTTATCAGTTGACTAATAATTGGTATCTTTTACAGGGAATGAGATGTATGGGTTCAAAATTGACGGTTTGGGTGACGCTTTAAAATAGTGTTTGTGGTAGATTCTGGACTTCTTTGAACTCAACAAATTGATGTTATAACTAACAATTTGAATTTTTCATATAAGAATTTTATCAATACCATAAAAAATTTCTTCAGATCTCGAACAGCTGATCCTCAAGAACAACTCCATAACACATTTGTCAGCTGATGTTTTCTCGACTCTTCCTCATCTACGTTTATTGGATCTCTCTTCAAACAGTCTATTGTCACTGCCAAATGAGGTGTTCTCGAAACTGAAAAATCTGAAGGTAAGTCATTGCATCAGTTGACTCGATTAGGCTTCATCGTCTTCTTAATTATTAATTAGGTTGACAGCATCTCAGAAGCCAAGGGAAGGCGATAACTTGATTGACACATGATTTCCGTATGTTAATGAGTAGGTAATAGGGAAAAGGACATCTGTCTTCGAATTCAGTCAAGCCATCCTTCTTTTCGCTTGACAGATGTCTTCGTCTGCCCCTCATTCTTAACAAAAACCC</canonical>
            <polymorphic>TTTTCTTTCGGTGATTTTTAGATACGTCCCAACGGAGGTTCAATTGTTTCAAATTCTAAGGCGAGAGAGGGAGAGCACATCCTTTTTTATTTGGGGAAAGAAATGACGCAACCCGCTAATTATGGATGACCTGACCTCAAACCTTCTAGGGAACTGTAATTTATGTCTTAGCATTCATTATATAAGCCGTAGTAAAACGAGGAAAAGAGCCGAAAATTGGGGTTACGGAGAAGAAATTTTGTGGAGCAACAGGAAGAAGAAAACATCTGCTGAGATTTGAAAAAATAATTCTGCTTGGTCCCTAAAATAGAGTCTAATAAAATCCCTAACTTTCAACTTTAAGCCTATATATCTCGATTCTTGTGAAAGATATCAAAAAGTGGTCCACTGACAAAATATTTTTGATATTATGATAAACATTTTATCAGTTGACTAATAATTGGTATCTTTTACAGGGAATGAGATGTATGGGTTCAAAATTGACGGTTTGGGTGACGCTWTAAAATAGTGTTTGTGGTAGATTCTGGACTTCTTTGAACTCAACAAATTGATGTTATAACTAACAATTTGAATTTTTCATATAAGAATTTTATCAATACCATAAAAAATTTCTTCAGATCTCGAACAGCTGATCCTCAAGAACAACTCCATAACACATTTGTCAGCTGATGTTTTCTCGACTCTTCCTCATCTACGTTTATTGGATCTCTCTTCAAACAGTCTATTGTCACTGCCAAATGAGGTGTTCTCGAAACTGAAAAATCTGAAGGTAAGTCATTGCATCAGTTGACTCGATTAGGCTTCATCGTCTTCTTAATTATTAATTAGGTTGACAGCATCTCAGAAGCCAAGGGAAGGCGATAACTTGATTGACACATGATTTCCGTATGTTAATGAGTAGGTAATAGGGAAAAGGACATCTGTCTTCGAATTCAGTCAAGCCATCCTTCTTTTCGCTTGACAGATGTCTTCGTCTGCCCCTCATTCTTAACAAAAACCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>339 314 161 97 70 12 7</canonical_bands>
                <polymorphic_bands>475 339 97 70 12 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTGGTCCCTAAAATAGAGTC</pcr_primer_p1>
		<pcr_primer_p2>TTATGGAGTTGTTCTTGAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>361</pcr_amplicon_size>
		<canonical_amplicon>GCTTGGTCCCTAAAATAGAGTCTAATAAAATCCCTAACTTTCAACTTTAAGCCTATATATCTCGATTCTTGTGAAAGATATCAAAAAGTGGTCCACTGACAAAATATTTTTGATATTATGATAAACATTTTATCAGTTGACTAATAATTGGTATCTTTTACAGGGAATGAGATGTATGGGTTCAAAATTGACGGTTTGGGTGACGCTTTAAAATAGTGTTTGTGGTAGATTCTGGACTTCTTTGAACTCAACAAATTGATGTTATAACTAACAATTTGAATTTTTCATATAAGAATTTTATCAATACCATAAAAAATTTCTTCAGATCTCGAACAGCTGATCCTCAAGAACAACTCCATAA</canonical_amplicon>
		<polymorphic_amplicon>GCTTGGTCCCTAAAATAGAGTCTAATAAAATCCCTAACTTTCAACTTTAAGCCTATATATCTCGATTCTTGTGAAAGATATCAAAAAGTGGTCCACTGACAAAATATTTTTGATATTATGATAAACATTTTATCAGTTGACTAATAATTGGTATCTTTTACAGGGAATGAGATGTATGGGTTCAAAATTGACGGTTTGGGTGACGCTWTAAAATAGTGTTTGTGGTAGATTCTGGACTTCTTTGAACTCAACAAATTGATGTTATAACTAACAATTTGAATTTTTCATATAAGAATTTTATCAATACCATAAAAAATTTCTTCAGATCTCGAACAGCTGATCCTCAAGAACAACTCCATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1417</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>51161</contig_pos>
        <strand></strand>
        <context>KAAAAAAAGA[T/G]AAAAATTAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ACGAGAAACACTAATATTCAAAACTACAATTAACGAATCGAAAAAAAAGA</left_flank>
        <right_flank>AAAAATTAGCTTTTCGTTGACTCCATCAAGTCTTTAGCTTCGTTGATTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATTTTGTGTTAAAAAAATACAAGAAAATATATTTTTTATGTCATGAATAACCCCATTAAAAACAAGGCAGAGAAGTCGGTTTAAAAAATGTTTTTTTTTACGAAACGCAAGGTCTAAATACTATTGCTTATCAGTTGGTTGAACGAGAAGACGGCAGAAACTTCTAGAAATCAATAGTAACAGTGATAAGATAGGTGATAGTGCAAACTTCGGACTCCAAATTATTAATTGCAAAATTAGAGTTCGAAAACCAGAAGATGGCAAATTTGGCCTTGACTCGGTAATACTATTTATGGCAGAAGGAAGAAAAACGGATAAATGGCTAGAAAGGAATCCCATGGGATATATCGAAAAAAAAAGCAACAAAAAACAATGAGTCACCGGAATCGTTATCGGAGTTGAGAACAAAAATTTAAGAGAAAAAAGATGTTTTTATTCGAGACAAAACGAGAAACACTAATATTCAAAACTACAATTAACGAATCGAAAAAAAAGATAAAAATTAGCTTTTCGTTGACTCCATCAAGTCTTTAGCTTCGTTGATTTTAGCGGCCAAATATGGAGATCCTCCTGAAAGAAAGAAGAAGTAATGTCTCTCAATCATTTGAGCTCATTAGAGCGTGGCACTGCATTTTTAATGGGAAGAAAATAGAAAAAAAATGGAAAAGAGTGGAAAGCAGGATTAGGAAAGAGGGCAGATCTCTGTTTTCTTTTCTTATTGGTTTATTTCGAAAAAAGTCTAGATCACCTCTATCTGGATGATTCACAATCATCACTTTTTTGTGTGCATCTTTAATTTTCGCTGGCTTGGCTGACGGCGTAATTCCGAGGATTTTAGCTGCTTCACTTCTCGACATCTTCTGATCGAATCCTCCTCGATAATAACTGTTCAGCTGAAAACATTGCGAACGTTGTTTCAAAAATGATAGATAAAGGATATACTCCTCCGGCAACTGGCAATGCTTCCATTCCCTTTTTAATCAATGCTTGATTCCGC</canonical>
            <polymorphic>AATATTTTGTGTTAAAAAAATACAAGAAAATATATTTTTTATGTCATGAATAACCCCATTAAAAACAAGGCAGAGAAGTCGGTTTAAAAAATGTTTTTTTTTACGAAACGCAAGGTCTAAATACTATTGCTTATCAGTTGGTTGAACGAGAAGACGGCAGAAACTTCTAGAAATCAATAGTAACAGTGATAAGATAGGTGATAGTGCAAACTTCGGACTCCAAATTATTAATTGCAAAATTAGAGTTCGAAAACCAGAAGATGGCAAATTTGGCCTTGACTCGGTAATACTATTTATGGCAGAAGGAAGAAAAACGGATAAATGGCTAGAAAGGAATCCCATGGGATATATCGAAAAAAAAAGCAACAAAAAACAATGAGTCACCGGAATCGTTATCGGAGTTGAGAACAAAAATTTAAGAGAAAAAAGATGTTTTTATTCGAGACAAAACGAGAAACACTAATATTCAAAACTACAATTAACGAATCGAAAAAAAAGAKAAAAATTAGCTTTTCGTTGACTCCATCAAGTCTTTAGCTTCGTTGATTTTAGCGGCCAAATATGGAGATCCTCCTGAAAGAAAGAAGAAGTAATGTCTCTCAATCATTTGAGCTCATTAGAGCGTGGCACTGCATTTTTAATGGGAAGAAAATAGAAAAAAAATGGAAAAGAGTGGAAAGCAGGATTAGGAAAGAGGGCAGATCTCTGTTTTCTTTTCTTATTGGTTTATTTCGAAAAAAGTCTAGATCACCTCTATCTGGATGATTCACAATCATCACTTTTTTGTGTGCATCTTTAATTTTCGCTGGCTTGGCTGACGGCGTAATTCCGAGGATTTTAGCTGCTTCACTTCTCGACATCTTCTGATCGAATCCTCCTCGATAATAACTGTTCAGCTGAAAACATTGCGAACGTTGTTTCAAAAATGATAGATAAAGGATATACTCCTCCGGCAACTGGCAATGCTTCCATTCCCTTTTTAATCAATGCTTGATTCCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGACAAAACGAGAAACACTAAT</pcr_primer_p1>
		<pcr_primer_p2>CTAATCCTGCTTTCCACTCTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAGACAAAACGAGAAACACTAATATTCAAAACTACAATTAACGAATCGAAAAAAAAGATAAAAATTAGCTTTTCGTTGACTCCATCAAGTCTTTAGCTTCGTTGATTTTAGCGGCCAAATATGGAGATCCTCCTGAAAGAAAGAAGAAGTAATGTCTCTCAATCATTTGAGCTCATTAGAGCGTGGCACTGCATTTTTAATGGGAAGAAAATAGAAAAAAAATGGAAAAGAGTGGAAAGCAGGATTAG</canonical_amplicon>
		<polymorphic_amplicon>GAGACAAAACGAGAAACACTAATATTCAAAACTACAATTAACGAATCGAAAAAAAAGAKAAAAATTAGCTTTTCGTTGACTCCATCAAGTCTTTAGCTTCGTTGATTTTAGCGGCCAAATATGGAGATCCTCCTGAAAGAAAGAAGAAGTAATGTCTCTCAATCATTTGAGCTCATTAGAGCGTGGCACTGCATTTTTAATGGGAAGAAAATAGAAAAAAAATGGAAAAGAGTGGAAAGCAGGATTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1454</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>112108</contig_pos>
        <strand>+</strand>
        <context>AGAACAAGTG[C/T]ATTGATCAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGGCGATTCGAGATTGTGGAGAACATTTTACTTGTCAGGAGAACAAGTG</left_flank>
        <right_flank>ATTGATCAGATGACAGTTTTAAAAGGATAATTAAATTTTAAAAAATGTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTACCAGAAATGTTACTACAGGTCTCGTAACGAAACCTACAGTAGTCCGAGAAAAATTGAAATTTTCTTTTTTCCATTTTTTTGGTTTTCTTTTTCAAAATATAGTTTTCTAGCCGTCGGCAAAACGTGCCAAGACGATACTTGCCATGGTGGTACCGTATGCGTAAACGGTGTGTGCGTTGCGAATCCGTGCCCCGGAAGATGTCCACATGATCAGGATTGTCGACTCGGAGAGTGTAGATAATGGAGGGAGTACCGTGCATTGGGGAGTGTCGACATCCGTTCATTTGTGTTGACGGGCGGTGCAGAAGAAATGGTAAGAGCAGAAAAAACACTAACTTCTCCAACTGTTTTCAATTCTTGCAGACTGTGCTCGTAAAGTATGCCAAATCGGTGAATCATGTGAGGGAGGCAACTGCGTTCGTGTTGCTGATCGTTTCTGCACGCTGGCGATTCGAGATTGTGGAGAACATTTTACTTGTCAGGAGAACAAGTGTATTGATCAGATGACAGTTTTAAAAGGATAATTAAATTTTAAAAAATGTTTTTATCTCTAATAAACTTTTATTAAAATTAACAACAACAAAGATCTAACAAATTCTAATAACAATCTTTACCTAATTTCCTCTCGACCCTTTTCAAAATCTCAGCATTAAATTCATGAATCCGCTTCAGAGCCGCCCTTCCATTCGGATTCTTTTCCTCCACTCCTCTAGTGTTCCGTTTTGGAATCGCCACTTCCAGGGCTCTCTTCCAATCTCCATGCAAATTCACTTGTCTCAAAATTTCCGAAACCGCCAGAAGCGTCAAAAATTTAGAGCCTGACTTGAAATCGACGTATCGATCGATTGGAAGTTTCCGTACTAGAACTCCTGCAGATTGGGCGGCTTCCAGTGATGCATGCTTCGGAATCCCATGCTCTGGCACACGATCCACAATTCCTCCAATCACGTAAATCTTGTCGTCGTCTACAGATTCTAGTTCTTCTGATGCGTCC</canonical>
            <polymorphic>AAACTACCAGAAATGTTACTACAGGTCTCGTAACGAAACCTACAGTAGTCCGAGAAAAATTGAAATTTTCTTTTTTCCATTTTTTTGGTTTTCTTTTTCAAAATATAGTTTTCTAGCCGTCGGCAAAACGTGCCAAGACGATACTTGCCATGGTGGTACCGTATGCGTAAACGGTGTGTGCGTTGCGAATCCGTGCCCCGGAAGATGTCCACATGATCAGGATTGTCGACTCGGAGAGTGTAGATAATGGAGGGAGTACCGTGCATTGGGGAGTGTCGACATCCGTTCATTTGTGTTGACGGGCGGTGCAGAAGAAATGGTAAGAGCAGAAAAAACACTAACTTCTCCAACTGTTTTCAATTCTTGCAGACTGTGCTCGTAAAGTATGCCAAATCGGTGAATCATGTGAGGGAGGCAACTGCGTTCGTGTTGCTGATCGTTTCTGCACGCTGGCGATTCGAGATTGTGGAGAACATTTTACTTGTCAGGAGAACAAGTGYATTGATCAGATGACAGTTTTAAAAGGATAATTAAATTTTAAAAAATGTTTTTATCTCTAATAAACTTTTATTAAAATTAACAACAACAAAGATCTAACAAATTCTAATAACAATCTTTACCTAATTTCCTCTCGACCCTTTTCAAAATCTCAGCATTAAATTCATGAATCCGCTTCAGAGCCGCCCTTCCATTCGGATTCTTTTCCTCCACTCCTCTAGTGTTCCGTTTTGGAATCGCCACTTCCAGGGCTCTCTTCCAATCTCCATGCAAATTCACTTGTCTCAAAATTTCCGAAACCGCCAGAAGCGTCAAAAATTTAGAGCCTGACTTGAAATCGACGTATCGATCGATTGGAAGTTTCCGTACTAGAACTCCTGCAGATTGGGCGGCTTCCAGTGATGCATGCTTCGGAATCCCATGCTCTGGCACACGATCCACAATTCCTCCAATCACGTAAATCTTGTCGTCGTCTACAGATTCTAGTTCTTCTGATGCGTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAATTCTTGCAGACTGT</pcr_primer_p1>
		<pcr_primer_p2>GAATTTGTTAGATCTTTGTTGTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAATTCTTGCAGACTGTGCTCGTAAAGTATGCCAAATCGGTGAATCATGTGAGGGAGGCAACTGCGTTCGTGTTGCTGATCGTTTCTGCACGCTGGCGATTCGAGATTGTGGAGAACATTTTACTTGTCAGGAGAACAAGTGTATTGATCAGATGACAGTTTTAAAAGGATAATTAAATTTTAAAAAATGTTTTTATCTCTAATAAACTTTTATTAAAATTAACAACAACAAAGATCTAACAAATTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAATTCTTGCAGACTGTGCTCGTAAAGTATGCCAAATCGGTGAATCATGTGAGGGAGGCAACTGCGTTCGTGTTGCTGATCGTTTCTGCACGCTGGCGATTCGAGATTGTGGAGAACATTTTACTTGTCAGGAGAACAAGTGYATTGATCAGATGACAGTTTTAAAAGGATAATTAAATTTTAAAAAATGTTTTTATCTCTAATAAACTTTTATTAAAATTAACAACAACAAAGATCTAACAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1509</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>175169</contig_pos>
        <strand>+</strand>
        <context>CCCTATACGT[A/G]CTTtttgagc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTGAATAGATATACCAACAAAGAAGTTTGGTAACATAGCCCTATACGT</left_flank>
        <right_flank>CTTTTTGAGCACAATTATCTCGCTTTCTATAAGAGGTATCAAAATTTTGT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCAATTCGGGACGCCTTTTTTACTAACCGTAAACAAAATCCTTATTTCTCGTATTTTCACACCTACTTGTTTTTTCCGAGTGTATGTGACTGATACAGTATACCGGTGAGAAAGAAAAAAAGACAAATTTTTGACTGTTTTGGAGAAAATTCCTACACTTGGTGACTTGAAAAAGTGGTTAGAAATTTCAGAATATATCCTTCAAAATAAGAGCTTCATTTTTGTAGTTTATGACTTTCCTGAAAAATAAGGTCCTGCGAAATTATCCCACGCGGCTGCCTGCGGACCGCCGCCCGTGTTGCCAGAGTTCGCGAACGGAGAAACTCTTCAACGTCGAATATCTCTTTTGGACGGACATTTACAAAAAAAGTTGTTAACTGCAAAAATGGAGCTCCTTTTTTGAACGTTATTTTTCTAGTATACTACTTTTTTTTTTGAAAAACTGGAATTTGAATAGATATACCAACAAAGAAGTTTGGTAACATAGCCCTATACGTACTTTTTGAGCACAATTATCTCGCTTTCTATAAGAGGTATCAAAATTTTGTCAACGAATGAAATGTTTGTCATATTATGATGAACAATTTTGTAGTTGACCAAGTTTTGATATCTTTTACAGAAAACTAGACAATTAGGCTCAAAGTTGACAGTTTGGGCGGGCTTCTATTAGAGCAAATAGGGTACCTATTACAGTAGCAATACGGTTATAAAAATCGTCCACTATGAAAAGCTCGAAAACTCCCTATGTCCCAATCTCACGTTCGCTGGGGCGCGATTTCTGACCAGGCCTTTTGGAATGCTGTAAGCCAGACAGTTTCCCACTTTTTGACCTCCTAAATTTTAAAGATTTTTCACTAAAACAGTCAAAACATTTTCCCCGGGTTACTGTACACAACATATCAGCTGTTTTTTCTATATCTGTGTAGTTTTTGTTTGTGCTTCATGTTCAGTACATATTCTCTAACAGCTCTATATATGTAGAATTCTCCTTATTTCTG</canonical>
            <polymorphic>ATCCAATTCGGGACGCCTTTTTTACTAACCGTAAACAAAATCCTTATTTCTCGTATTTTCACACCTACTTGTTTTTTCCGAGTGTATGTGACTGATACAGTATACCGGTGAGAAAGAAAAAAAGACAAATTTTTGACTGTTTTGGAGAAAATTCCTACACTTGGTGACTTGAAAAAGTGGTTAGAAATTTCAGAATATATCCTTCAAAATAAGAGCTTCATTTTTGTAGTTTATGACTTTCCTGAAAAATAAGGTCCTGCGAAATTATCCCACGCGGCTGCCTGCGGACCGCCGCCCGTGTTGCCAGAGTTCGCGAACGGAGAAACTCTTCAACGTCGAATATCTCTTTTGGACGGACATTTACAAAAAAAGTTGTTAACTGCAAAAATGGAGCTCCTTTTTTGAACGTTATTTTTCTAGTATACTACTTTTTTTTTTGAAAAACTGGAATTTGAATAGATATACCAACAAAGAAGTTTGGTAACATAGCCCTATACGTRCTTTTTGAGCACAATTATCTCGCTTTCTATAAGAGGTATCAAAATTTTGTCAACGAATGAAATGTTTGTCATATTATGATGAACAATTTTGTAGTTGACCAAGTTTTGATATCTTTTACAGAAAACTAGACAATTAGGCTCAAAGTTGACAGTTTGGGCGGGCTTCTATTAGAGCAAATAGGGTACCTATTACAGTAGCAATACGGTTATAAAAATCGTCCACTATGAAAAGCTCGAAAACTCCCTATGTCCCAATCTCACGTTCGCTGGGGCGCGATTTCTGACCAGGCCTTTTGGAATGCTGTAAGCCAGACAGTTTCCCACTTTTTGACCTCCTAAATTTTAAAGATTTTTCACTAAAACAGTCAAAACATTTTCCCCGGGTTACTGTACACAACATATCAGCTGTTTTTTCTATATCTGTGTAGTTTTTGTTTGTGCTTCATGTTCAGTACATATTCTCTAACAGCTCTATATATGTAGAATTCTCCTTATTTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 207 185 62 47</canonical_bands>
                <polymorphic_bands>684 207 62 47</polymorphic_bands>
            </assay>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TACGTA</site>
                <isoschizomers>
                    <enzyme>BstSNI</enzyme>
                    <enzyme>Eco105I</enzyme>
                    <enzyme>SnaBI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAAAAACTGGAATTTGA</pcr_primer_p1>
		<pcr_primer_p2>CGATTTTTATAACCGTATTGCTA</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAAAAACTGGAATTTGAATAGATATACCAACAAAGAAGTTTGGTAACATAGCCCTATACGTACTTTTTGAGCACAATTATCTCGCTTTCTATAAGAGGTATCAAAATTTTGTCAACGAATGAAATGTTTGTCATATTATGATGAACAATTTTGTAGTTGACCAAGTTTTGATATCTTTTACAGAAAACTAGACAATTAGGCTCAAAGTTGACAGTTTGGGCGGGCTTCTATTAGAGCAAATAGGGTACCTATTACAGTAGCAATACGGTTATAAAAATCG</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAAAAACTGGAATTTGAATAGATATACCAACAAAGAAGTTTGGTAACATAGCCCTATACGTRCTTTTTGAGCACAATTATCTCGCTTTCTATAAGAGGTATCAAAATTTTGTCAACGAATGAAATGTTTGTCATATTATGATGAACAATTTTGTAGTTGACCAAGTTTTGATATCTTTTACAGAAAACTAGACAATTAGGCTCAAAGTTGACAGTTTGGGCGGGCTTCTATTAGAGCAAATAGGGTACCTATTACAGTAGCAATACGGTTATAAAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1510</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>175666</contig_pos>
        <strand>+</strand>
        <context>TCTCCTTATT[G/T]CTGGGATATT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTCAGTACATATTCTCTAACAGCTCTATATATGTAGAATTCTCCTTATT</left_flank>
        <right_flank>CTGGGATATTAAACTTTTATTAACAAAACGAAACCCACAGCGGGGTTTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACTTTTTGAGCACAATTATCTCGCTTTCTATAAGAGGTATCAAAATTTTGTCAACGAATGAAATGTTTGTCATATTATGATGAACAATTTTGTAGTTGACCAAGTTTTGATATCTTTTACAGAAAACTAGACAATTAGGCTCAAAGTTGACAGTTTGGGCGGGCTTCTATTAGAGCAAATAGGGTACCTATTACAGTAGCAATACGGTTATAAAAATCGTCCACTATGAAAAGCTCGAAAACTCCCTATGTCCCAATCTCACGTTCGCTGGGGCGCGATTTCTGACCAGGCCTTTTGGAATGCTGTAAGCCAGACAGTTTCCCACTTTTTGACCTCCTAAATTTTAAAGATTTTTCACTAAAACAGTCAAAACATTTTCCCCGGGTTACTGTACACAACATATCAGCTGTTTTTTCTATATCTGTGTAGTTTTTGTTTGTGCTTCATGTTCAGTACATATTCTCTAACAGCTCTATATATGTAGAATTCTCCTTATTTCTGGGATATTAAACTTTTATTAACAAAACGAAACCCACAGCGGGGTTTTTCCTTTCTCTTTGTTGCCTATAACATTTTTCCAAAGTTCGCTCTATTGAAATTTAAATTCTCAATGGAGCGTACTCGCTTATGCTTAACACCACACAACAATTAGTTTAACTTCTTTCCCTTTTTTCTCTTCACTTTCTCATTTTTTTTCTTACTTTGGAGTTCAGTTCGAGGCCGAAAACACTGCTACTACGGTATGTTAGAGAGAATGACCTGAGAAGTTGGGTCCCACAAAACAAGTGTGCTCTGTAGAGCGTCTTTGCATTTGTGGGATTAACCAATTTTTTCTAATTTTCGATTCCTAATCCTTACCCTTTTATTTTTGTGATGATTTTTGAAAAATAATTTTAATTAAAAAAACTAATTTTGCTTATTTTAACCAAAATTAAAAATCTAAAAAAAAGTCGCCTGCCCGAGATTGACACAACTAGATTCTCTCCAAACAACCTGAA</canonical>
            <polymorphic>GTACTTTTTGAGCACAATTATCTCGCTTTCTATAAGAGGTATCAAAATTTTGTCAACGAATGAAATGTTTGTCATATTATGATGAACAATTTTGTAGTTGACCAAGTTTTGATATCTTTTACAGAAAACTAGACAATTAGGCTCAAAGTTGACAGTTTGGGCGGGCTTCTATTAGAGCAAATAGGGTACCTATTACAGTAGCAATACGGTTATAAAAATCGTCCACTATGAAAAGCTCGAAAACTCCCTATGTCCCAATCTCACGTTCGCTGGGGCGCGATTTCTGACCAGGCCTTTTGGAATGCTGTAAGCCAGACAGTTTCCCACTTTTTGACCTCCTAAATTTTAAAGATTTTTCACTAAAACAGTCAAAACATTTTCCCCGGGTTACTGTACACAACATATCAGCTGTTTTTTCTATATCTGTGTAGTTTTTGTTTGTGCTTCATGTTCAGTACATATTCTCTAACAGCTCTATATATGTAGAATTCTCCTTATTKCTGGGATATTAAACTTTTATTAACAAAACGAAACCCACAGCGGGGTTTTTCCTTTCTCTTTGTTGCCTATAACATTTTTCCAAAGTTCGCTCTATTGAAATTTAAATTCTCAATGGAGCGTACTCGCTTATGCTTAACACCACACAACAATTAGTTTAACTTCTTTCCCTTTTTTCTCTTCACTTTCTCATTTTTTTTCTTACTTTGGAGTTCAGTTCGAGGCCGAAAACACTGCTACTACGGTATGTTAGAGAGAATGACCTGAGAAGTTGGGTCCCACAAAACAAGTGTGCTCTGTAGAGCGTCTTTGCATTTGTGGGATTAACCAATTTTTTCTAATTTTCGATTCCTAATCCTTACCCTTTTATTTTTGTGATGATTTTTGAAAAATAATTTTAATTAAAAAAACTAATTTTGCTTATTTTAACCAAAATTAAAAATCTAAAAAAAAGTCGCCTGCCCGAGATTGACACAACTAGATTCTCTCCAAACAACCTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTTCATGTTCAGTACATATTC</pcr_primer_p1>
		<pcr_primer_p2>AAATGAGAAAGTGAAGAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TGCTTCATGTTCAGTACATATTCTCTAACAGCTCTATATATGTAGAATTCTCCTTATTTCTGGGATATTAAACTTTTATTAACAAAACGAAACCCACAGCGGGGTTTTTCCTTTCTCTTTGTTGCCTATAACATTTTTCCAAAGTTCGCTCTATTGAAATTTAAATTCTCAATGGAGCGTACTCGCTTATGCTTAACACCACACAACAATTAGTTTAACTTCTTTCCCTTTTTTCTCTTCACTTTCTCATTT</canonical_amplicon>
		<polymorphic_amplicon>TGCTTCATGTTCAGTACATATTCTCTAACAGCTCTATATATGTAGAATTCTCCTTATTKCTGGGATATTAAACTTTTATTAACAAAACGAAACCCACAGCGGGGTTTTTCCTTTCTCTTTGTTGCCTATAACATTTTTCCAAAGTTCGCTCTATTGAAATTTAAATTCTCAATGGAGCGTACTCGCTTATGCTTAACACCACACAACAATTAGTTTAACTTCTTTCCCTTTTTTCTCTTCACTTTCTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1511</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>182867</contig_pos>
        <strand></strand>
        <context>CAGAAACACA[C/T]ACACACTCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTATCTGAATATATTACCGAAGAATGAGAAAGAAAGGAACAGAAACACA</left_flank>
        <right_flank>ACACACTCTCTCAAATAAATTATATTATTTCTCTCTCCAATGAAGACAGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTCGCAATCTGCACTGTTGAGACAGGAAAACAGATTTTGGATAATGTGTTATCAAGATCGAATATGATAATGATGCAGCAGATTCTGATGAAAAAGAAGGATGTTGATGAGAAGATGAGGAAATTGGAGAAAAGAAAGGAGGAAGAGGAGAAAGAGCAAAAGAATCCGAGTGTTGGAGAGCCGATTGCTAAGAGATTAAGACTGGTCAAAGTCAAAAATTCAACGAATTTTTTAAAAATGTGATATTTAAAACACACCCCATCTCAATTGTCCATCCAGGTTTTTCATTCAAATTTTTCATAATATCACAAACATTTTATCAGTTGACAAATTTTTGATATCTTGCATATGAACCGAGATAATGGAGATCAAACTTGACAGTGTGTTCTAGAGACCTCTGGGTTCTGAAAGATGGTGACATCTACAGTATACAATCAAATCAAAAACTTTATCTGAATATATTACCGAAGAATGAGAAAGAAAGGAACAGAAACACACACACACTCTCTCAAATAAATTATATTATTTCTCTCTCCAATGAAGACAGCTAAACTAGTACAGTGGCCAGAACGACATTGAACGGTATCCGATTTCCGATGGTCCATCTCTGGAATATTCGAAACTTGCAAAAAAAAAAAAAACAATAATTTTGGAATGAAACTCACATATACTCATTTTCATCTCGTTTCGTCGTCTTCTGACGATAGAACTTGCGAAGATAGGAGAGTGGAATACGGTCGAGACTTCCAAATGCCGATCTGGAAAAGAAAATGGGAATTCAGAGAACTGTTATGAAGTTCTTGCCGCGCCCCCGGCGCTTGTGGCTGGTGCGTCTTCGGCGCGATTGACGTTTGTATTTTACTGTTAGCCGCTTTTCAAAATGTGACTTCAAATTGTATTGGGTCTTCAAGCACTTCAAAAATTTTTTCGTTTTTTTAGATTCACGTTACGCAATAAATAAAAAATCAATTATTATTAGGTCACGCCCCCTCCTACTG</canonical>
            <polymorphic>AAGTCGCAATCTGCACTGTTGAGACAGGAAAACAGATTTTGGATAATGTGTTATCAAGATCGAATATGATAATGATGCAGCAGATTCTGATGAAAAAGAAGGATGTTGATGAGAAGATGAGGAAATTGGAGAAAAGAAAGGAGGAAGAGGAGAAAGAGCAAAAGAATCCGAGTGTTGGAGAGCCGATTGCTAAGAGATTAAGACTGGTCAAAGTCAAAAATTCAACGAATTTTTTAAAAATGTGATATTTAAAACACACCCCATCTCAATTGTCCATCCAGGTTTTTCATTCAAATTTTTCATAATATCACAAACATTTTATCAGTTGACAAATTTTTGATATCTTGCATATGAACCGAGATAATGGAGATCAAACTTGACAGTGTGTTCTAGAGACCTCTGGGTTCTGAAAGATGGTGACATCTACAGTATACAATCAAATCAAAAACTTTATCTGAATATATTACCGAAGAATGAGAAAGAAAGGAACAGAAACACAYACACACTCTCTCAAATAAATTATATTATTTCTCTCTCCAATGAAGACAGCTAAACTAGTACAGTGGCCAGAACGACATTGAACGGTATCCGATTTCCGATGGTCCATCTCTGGAATATTCGAAACTTGCAAAAAAAAAAAAAACAATAATTTTGGAATGAAACTCACATATACTCATTTTCATCTCGTTTCGTCGTCTTCTGACGATAGAACTTGCGAAGATAGGAGAGTGGAATACGGTCGAGACTTCCAAATGCCGATCTGGAAAAGAAAATGGGAATTCAGAGAACTGTTATGAAGTTCTTGCCGCGCCCCCGGCGCTTGTGGCTGGTGCGTCTTCGGCGCGATTGACGTTTGTATTTTACTGTTAGCCGCTTTTCAAAATGTGACTTCAAATTGTATTGGGTCTTCAAGCACTTCAAAAATTTTTTCGTTTTTTTAGATTCACGTTACGCAATAAATAAAAAATCAATTATTATTAGGTCACGCCCCCTCCTACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>124 101 94 78 75 70 65 60 55 52 39 35 32 31 28 15 15 12 7 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>124 101 94 78 75 70 65 60 55 52 39 35 32 31 28 15 15 12 7 6 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGACATCTACAGTATACAATCAA</pcr_primer_p1>
		<pcr_primer_p2>ATGTGAGTTTCATTCCAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GGTGACATCTACAGTATACAATCAAATCAAAAACTTTATCTGAATATATTACCGAAGAATGAGAAAGAAAGGAACAGAAACACACACACACTCTCTCAAATAAATTATATTATTTCTCTCTCCAATGAAGACAGCTAAACTAGTACAGTGGCCAGAACGACATTGAACGGTATCCGATTTCCGATGGTCCATCTCTGGAATATTCGAAACTTGCAAAAAAAAAAAAAACAATAATTTTGGAATGAAACTCACAT</canonical_amplicon>
		<polymorphic_amplicon>GGTGACATCTACAGTATACAATCAAATCAAAAACTTTATCTGAATATATTACCGAAGAATGAGAAAGAAAGGAACAGAAACACAYACACACTCTCTCAAATAAATTATATTATTTCTCTCTCCAATGAAGACAGCTAAACTAGTACAGTGGCCAGAACGACATTGAACGGTATCCGATTTCCGATGGTCCATCTCTGGAATATTCGAAACTTGCAAAAAAAAAAAAAACAATAATTTTGGAATGAAACTCACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1512</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>238151</contig_pos>
        <strand>+</strand>
        <context>aaaaaGCGGA[A/G]CCGTTTTTYT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAAAATAAAAAGAAAAGAAAAATAAGAAAATAGCAAAAAAAAAAGCGGA</left_flank>
        <right_flank>CCGTTTTTCTTTCGTCTTCCCTCCGGAGTGTGGCTATAAATTTAGCGTCG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTATGAAAATTTGTCTTTTCAGGAATTTAGGAATTTTTGGAGTTTTAGATGTTTTGAAAATTATGAACTTTTGAATTTTCATAAATTTTTAGAATTCCTAGAAATTCTTGACTTTCCGGAATTAAATTTGGATTTCTATGAATTTTCAGAATTTTTCGAATTTTTAGAAAATTGAATTTTTTTTGCCAAATGTTATGGAAATTTTGGACTTTTTTTAATTTTAGAACTTAGAATTTTTATGAATTTGAAGAATTTTTGGATTTTTTCAAAACTTTGAAATTTTAAAAACCTTCAAAACCAAACATTAGCATCTCGGAGGGAAATTCAAAAATAGATTTTTCCGAATTTTTCGCAGTTTCAAAAAATCCGACTATTAGTTCACATGAACTGATTCTAGAATCAAAATTTCAAAGAAGTCACCTCCTCCAAAAGTGAATTTCAAAACTAAATAAAATAAAAAGAAAAGAAAAATAAGAAAATAGCAAAAAAAAAAGCGGAGCCGTTTTTCTTTCGTCTTCCCTCCGGAGTGTGGCTATAAATTTAGCGTCGATTTGATGATGACGTAGTTAGGGCCACCAGCCTCACCTTTTTTGGGAGGAGGGTCTTCTTTTTTTGTTGCAAAATTCGCTCTATTGATAATAGTATGAATAGAGCGAATTTGCTGCAGAAGGAGGGTAAAAAGTGACGTTTTGAAAATTTTTGTTTGGTGATAAAAAACAAAACATATTTAGGTAGAGATAGAGAGCTAGAGAGGAAGTGAAGAGGCGGTGATAACCGAATTTCTTCTTGTTTTATTTTTTTATTTGGATTTTGATGACAAGCCAATAGGGGATTATCAAGATATTTATTATGGGGAGAGAACAGAATAATATTCTGGAAGTTCCTTTTTTTTGAATTTTTTCCATTTTATTTCCAGAGTTTGGTGTTCTGAGAAACTTTCTAGAAGTGGAAATTTTCTAAAATATCATTGTTTTTACAAATGTCTGGTTTTCTGGAAAA</canonical>
            <polymorphic>TTTATGAAAATTTGTCTTTTCAGGAATTTAGGAATTTTTGGAGTTTTAGATGTTTTGAAAATTATGAACTTTTGAATTTTCATAAATTTTTAGAATTCCTAGAAATTCTTGACTTTCCGGAATTAAATTTGGATTTCTATGAATTTTCAGAATTTTTCGAATTTTTAGAAAATTGAATTTTTTTTGCCAAATGTTATGGAAATTTTGGACTTTTTTTAATTTTAGAACTTAGAATTTTTATGAATTTGAAGAATTTTTGGATTTTTTCAAAACTTTGAAATTTTAAAAACCTTCAAAACCAAACATTAGCATCTCGGAGGGAAATTCAAAAATAGATTTTTCCGAATTTTTCGCAGTTTCAAAAAATCCGACTATTAGTTCACATGAACTGATTCTAGAATCAAAATTTCAAAGAAGTCACCTCCTCCAAAAGTGAATTTCAAAACTAAATAAAATAAAAAGAAAAGAAAAATAAGAAAATAGCAAAAAAAAAAGCGGARCCGTTTTTCTTTCGTCTTCCCTCCGGAGTGTGGCTATAAATTTAGCGTCGATTTGATGATGACGTAGTTAGGGCCACCAGCCTCACCTTTTTTGGGAGGAGGGTCTTCTTTTTTTGTTGCAAAATTCGCTCTATTGATAATAGTATGAATAGAGCGAATTTGCTGCAGAAGGAGGGTAAAAAGTGACGTTTTGAAAATTTTTGTTTGGTGATAAAAAACAAAACATATTTAGGTAGAGATAGAGAGCTAGAGAGGAAGTGAAGAGGCGGTGATAACCGAATTTCTTCTTGTTTTATTTTTTTATTTGGATTTTGATGACAAGCCAATAGGGGATTATCAAGATATTTATTATGGGGAGAGAACAGAATAATATTCTGGAAGTTCCTTTTTTTTGAATTTTTTCCATTTTATTTCCAGAGTTTGGTGTTCTGAGAAACTTTCTAGAAGTGGAAATTTTCTAAAATATCATTGTTTTTACAAATGTCTGGTTTTCTGGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>500 178 166 76 40 33 7</canonical_bands>
                <polymorphic_bands>533 178 166 76 40 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATAGATTTTTCCGAATTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CCTAACTACGTCATCATCAAATC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAATAGATTTTTCCGAATTTTTCGCAGTTTCAAAAAATCCGACTATTAGTTCACATGAACTGATTCTAGAATCAAAATTTCAAAGAAGTCACCTCCTCCAAAAGTGAATTTCAAAACTAAATAAAATAAAAAGAAAAGAAAAATAAGAAAATAGCAAAAAAAAAAGCGGAGCCGTTTTTCTTTCGTCTTCCCTCCGGAGTGTGGCTATAAATTTAGCGTCGATTTGATGATGACGTAGTTAGG</canonical_amplicon>
		<polymorphic_amplicon>AAATAGATTTTTCCGAATTTTTCGCAGTTTCAAAAAATCCGACTATTAGTTCACATGAACTGATTCTAGAATCAAAATTTCAAAGAAGTCACCTCCTCCAAAAGTGAATTTCAAAACTAAATAAAATAAAAAGAAAAGAAAAATAAGAAAATAGCAAAAAAAAAAGCGGARCCGTTTTTCTTTCGTCTTCCCTCCGGAGTGTGGCTATAAATTTAGCGTCGATTTGATGATGACGTAGTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1513</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>238160</contig_pos>
        <strand>+</strand>
        <context>ARCCGTTTTT[C/T]TTTCGTCTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGAAAAGAAAAATAAGAAAATAGCAAAAAAAAAAGCGGAGCCGTTTTT</left_flank>
        <right_flank>TTTCGTCTTCCCTCCGGAGTGTGGCTATAAATTTAGCGTCGATTTGATGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGTCTTTTCAGGAATTTAGGAATTTTTGGAGTTTTAGATGTTTTGAAAATTATGAACTTTTGAATTTTCATAAATTTTTAGAATTCCTAGAAATTCTTGACTTTCCGGAATTAAATTTGGATTTCTATGAATTTTCAGAATTTTTCGAATTTTTAGAAAATTGAATTTTTTTTGCCAAATGTTATGGAAATTTTGGACTTTTTTTAATTTTAGAACTTAGAATTTTTATGAATTTGAAGAATTTTTGGATTTTTTCAAAACTTTGAAATTTTAAAAACCTTCAAAACCAAACATTAGCATCTCGGAGGGAAATTCAAAAATAGATTTTTCCGAATTTTTCGCAGTTTCAAAAAATCCGACTATTAGTTCACATGAACTGATTCTAGAATCAAAATTTCAAAGAAGTCACCTCCTCCAAAAGTGAATTTCAAAACTAAATAAAATAAAAAGAAAAGAAAAATAAGAAAATAGCAAAAAAAAAAGCGGAGCCGTTTTTCTTTCGTCTTCCCTCCGGAGTGTGGCTATAAATTTAGCGTCGATTTGATGATGACGTAGTTAGGGCCACCAGCCTCACCTTTTTTGGGAGGAGGGTCTTCTTTTTTTGTTGCAAAATTCGCTCTATTGATAATAGTATGAATAGAGCGAATTTGCTGCAGAAGGAGGGTAAAAAGTGACGTTTTGAAAATTTTTGTTTGGTGATAAAAAACAAAACATATTTAGGTAGAGATAGAGAGCTAGAGAGGAAGTGAAGAGGCGGTGATAACCGAATTTCTTCTTGTTTTATTTTTTTATTTGGATTTTGATGACAAGCCAATAGGGGATTATCAAGATATTTATTATGGGGAGAGAACAGAATAATATTCTGGAAGTTCCTTTTTTTTGAATTTTTTCCATTTTATTTCCAGAGTTTGGTGTTCTGAGAAACTTTCTAGAAGTGGAAATTTTCTAAAATATCATTGTTTTTACAAATGTCTGGTTTTCTGGAAAAATGGAAATT</canonical>
            <polymorphic>ATTTGTCTTTTCAGGAATTTAGGAATTTTTGGAGTTTTAGATGTTTTGAAAATTATGAACTTTTGAATTTTCATAAATTTTTAGAATTCCTAGAAATTCTTGACTTTCCGGAATTAAATTTGGATTTCTATGAATTTTCAGAATTTTTCGAATTTTTAGAAAATTGAATTTTTTTTGCCAAATGTTATGGAAATTTTGGACTTTTTTTAATTTTAGAACTTAGAATTTTTATGAATTTGAAGAATTTTTGGATTTTTTCAAAACTTTGAAATTTTAAAAACCTTCAAAACCAAACATTAGCATCTCGGAGGGAAATTCAAAAATAGATTTTTCCGAATTTTTCGCAGTTTCAAAAAATCCGACTATTAGTTCACATGAACTGATTCTAGAATCAAAATTTCAAAGAAGTCACCTCCTCCAAAAGTGAATTTCAAAACTAAATAAAATAAAAAGAAAAGAAAAATAAGAAAATAGCAAAAAAAAAAGCGGAGCCGTTTTTYTTTCGTCTTCCCTCCGGAGTGTGGCTATAAATTTAGCGTCGATTTGATGATGACGTAGTTAGGGCCACCAGCCTCACCTTTTTTGGGAGGAGGGTCTTCTTTTTTTGTTGCAAAATTCGCTCTATTGATAATAGTATGAATAGAGCGAATTTGCTGCAGAAGGAGGGTAAAAAGTGACGTTTTGAAAATTTTTGTTTGGTGATAAAAAACAAAACATATTTAGGTAGAGATAGAGAGCTAGAGAGGAAGTGAAGAGGCGGTGATAACCGAATTTCTTCTTGTTTTATTTTTTTATTTGGATTTTGATGACAAGCCAATAGGGGATTATCAAGATATTTATTATGGGGAGAGAACAGAATAATATTCTGGAAGTTCCTTTTTTTTGAATTTTTTCCATTTTATTTCCAGAGTTTGGTGTTCTGAGAAACTTTCTAGAAGTGGAAATTTTCTAAAATATCATTGTTTTTACAAATGTCTGGTTTTCTGGAAAAATGGAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATAGATTTTTCCGAATTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CCTAACTACGTCATCATCAAATC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAATAGATTTTTCCGAATTTTTCGCAGTTTCAAAAAATCCGACTATTAGTTCACATGAACTGATTCTAGAATCAAAATTTCAAAGAAGTCACCTCCTCCAAAAGTGAATTTCAAAACTAAATAAAATAAAAAGAAAAGAAAAATAAGAAAATAGCAAAAAAAAAAGCGGAGCCGTTTTTCTTTCGTCTTCCCTCCGGAGTGTGGCTATAAATTTAGCGTCGATTTGATGATGACGTAGTTAGG</canonical_amplicon>
		<polymorphic_amplicon>AAATAGATTTTTCCGAATTTTTCGCAGTTTCAAAAAATCCGACTATTAGTTCACATGAACTGATTCTAGAATCAAAATTTCAAAGAAGTCACCTCCTCCAAAAGTGAATTTCAAAACTAAATAAAATAAAAAGAAAAGAAAAATAAGAAAATAGCAAAAAAAAAAGCGGAGCCGTTTTTYTTTCGTCTTCCCTCCGGAGTGTGGCTATAAATTTAGCGTCGATTTGATGATGACGTAGTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1514</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>238328</contig_pos>
        <strand>+</strand>
        <context>AGAAGGAGGG[G/T]AAAAAGTGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGCTCTATTGATAATAGTATGAATAGAGCGAATTTGCTGCAGAAGGAGGG</left_flank>
        <right_flank>AAAAAGTGACGTTTTGAAAATTTTTGTTTGGTGATAAAAAACAAAACATA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTTGCCAAATGTTATGGAAATTTTGGACTTTTTTTAATTTTAGAACTTAGAATTTTTATGAATTTGAAGAATTTTTGGATTTTTTCAAAACTTTGAAATTTTAAAAACCTTCAAAACCAAACATTAGCATCTCGGAGGGAAATTCAAAAATAGATTTTTCCGAATTTTTCGCAGTTTCAAAAAATCCGACTATTAGTTCACATGAACTGATTCTAGAATCAAAATTTCAAAGAAGTCACCTCCTCCAAAAGTGAATTTCAAAACTAAATAAAATAAAAAGAAAAGAAAAATAAGAAAATAGCAAAAAAAAAAGCGGAGCCGTTTTTCTTTCGTCTTCCCTCCGGAGTGTGGCTATAAATTTAGCGTCGATTTGATGATGACGTAGTTAGGGCCACCAGCCTCACCTTTTTTGGGAGGAGGGTCTTCTTTTTTTGTTGCAAAATTCGCTCTATTGATAATAGTATGAATAGAGCGAATTTGCTGCAGAAGGAGGGTAAAAAGTGACGTTTTGAAAATTTTTGTTTGGTGATAAAAAACAAAACATATTTAGGTAGAGATAGAGAGCTAGAGAGGAAGTGAAGAGGCGGTGATAACCGAATTTCTTCTTGTTTTATTTTTTTATTTGGATTTTGATGACAAGCCAATAGGGGATTATCAAGATATTTATTATGGGGAGAGAACAGAATAATATTCTGGAAGTTCCTTTTTTTTGAATTTTTTCCATTTTATTTCCAGAGTTTGGTGTTCTGAGAAACTTTCTAGAAGTGGAAATTTTCTAAAATATCATTGTTTTTACAAATGTCTGGTTTTCTGGAAAAATGGAAATTTTGCATTTCCGGAAAACTGGTTTTCTGAATTTGTTGAAATTTTGGAATTATTACAAACTTAAAATTTTGGTTTTCTGGGAACTTTTGAATTTTTGAACTTTTCGATTTTTGGGAAATTTGCAATGTTTTGGATTTTTACGAAATTTTGAATGAAATGGGACTTATTCG</canonical>
            <polymorphic>TTTTTTTTGCCAAATGTTATGGAAATTTTGGACTTTTTTTAATTTTAGAACTTAGAATTTTTATGAATTTGAAGAATTTTTGGATTTTTTCAAAACTTTGAAATTTTAAAAACCTTCAAAACCAAACATTAGCATCTCGGAGGGAAATTCAAAAATAGATTTTTCCGAATTTTTCGCAGTTTCAAAAAATCCGACTATTAGTTCACATGAACTGATTCTAGAATCAAAATTTCAAAGAAGTCACCTCCTCCAAAAGTGAATTTCAAAACTAAATAAAATAAAAAGAAAAGAAAAATAAGAAAATAGCAAAAAAAAAAGCGGAGCCGTTTTTCTTTCGTCTTCCCTCCGGAGTGTGGCTATAAATTTAGCGTCGATTTGATGATGACGTAGTTAGGGCCACCAGCCTCACCTTTTTTGGGAGGAGGGTCTTCTTTTTTTGTTGCAAAATTCGCTCTATTGATAATAGTATGAATAGAGCGAATTTGCTGCAGAAGGAGGGKAAAAAGTGACGTTTTGAAAATTTTTGTTTGGTGATAAAAAACAAAACATATTTAGGTAGAGATAGAGAGCTAGAGAGGAAGTGAAGAGGCGGTGATAACCGAATTTCTTCTTGTTTTATTTTTTTATTTGGATTTTGATGACAAGCCAATAGGGGATTATCAAGATATTTATTATGGGGAGAGAACAGAATAATATTCTGGAAGTTCCTTTTTTTTGAATTTTTTCCATTTTATTTCCAGAGTTTGGTGTTCTGAGAAACTTTCTAGAAGTGGAAATTTTCTAAAATATCATTGTTTTTACAAATGTCTGGTTTTCTGGAAAAATGGAAATTTTGCATTTCCGGAAAACTGGTTTTCTGAATTTGTTGAAATTTTGGAATTATTACAAACTTAAAATTTTGGTTTTCTGGGAACTTTTGAATTTTTGAACTTTTCGATTTTTGGGAAATTTGCAATGTTTTGGATTTTTACGAAATTTTGAATGAAATGGGACTTATTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTGATGATGACGTAGTTAGG</pcr_primer_p1>
		<pcr_primer_p2>TAAAACAAGAAGAAATTCGGTTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GATTTGATGATGACGTAGTTAGGGCCACCAGCCTCACCTTTTTTGGGAGGAGGGTCTTCTTTTTTTGTTGCAAAATTCGCTCTATTGATAATAGTATGAATAGAGCGAATTTGCTGCAGAAGGAGGGTAAAAAGTGACGTTTTGAAAATTTTTGTTTGGTGATAAAAAACAAAACATATTTAGGTAGAGATAGAGAGCTAGAGAGGAAGTGAAGAGGCGGTGATAACCGAATTTCTTCTTGTTTTA</canonical_amplicon>
		<polymorphic_amplicon>GATTTGATGATGACGTAGTTAGGGCCACCAGCCTCACCTTTTTTGGGAGGAGGGTCTTCTTTTTTTGTTGCAAAATTCGCTCTATTGATAATAGTATGAATAGAGCGAATTTGCTGCAGAAGGAGGGKAAAAAGTGACGTTTTGAAAATTTTTGTTTGGTGATAAAAAACAAAACATATTTAGGTAGAGATAGAGAGCTAGAGAGGAAGTGAAGAGGCGGTGATAACCGAATTTCTTCTTGTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1515</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>238395</contig_pos>
        <strand>+</strand>
        <context>TAGAGATAGA[G/T]AGCTAGAGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAATTTTTGTTTGGTGATAAAAAACAAAACATATTTAGGTAGAGATAGA</left_flank>
        <right_flank>AGCTAGAGAGGAAGTGAAGAGGCGGTGATAACCGAATTTCTTCTTGTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAAGAATTTTTGGATTTTTTCAAAACTTTGAAATTTTAAAAACCTTCAAAACCAAACATTAGCATCTCGGAGGGAAATTCAAAAATAGATTTTTCCGAATTTTTCGCAGTTTCAAAAAATCCGACTATTAGTTCACATGAACTGATTCTAGAATCAAAATTTCAAAGAAGTCACCTCCTCCAAAAGTGAATTTCAAAACTAAATAAAATAAAAAGAAAAGAAAAATAAGAAAATAGCAAAAAAAAAAGCGGAGCCGTTTTTCTTTCGTCTTCCCTCCGGAGTGTGGCTATAAATTTAGCGTCGATTTGATGATGACGTAGTTAGGGCCACCAGCCTCACCTTTTTTGGGAGGAGGGTCTTCTTTTTTTGTTGCAAAATTCGCTCTATTGATAATAGTATGAATAGAGCGAATTTGCTGCAGAAGGAGGGTAAAAAGTGACGTTTTGAAAATTTTTGTTTGGTGATAAAAAACAAAACATATTTAGGTAGAGATAGAGAGCTAGAGAGGAAGTGAAGAGGCGGTGATAACCGAATTTCTTCTTGTTTTATTTTTTTATTTGGATTTTGATGACAAGCCAATAGGGGATTATCAAGATATTTATTATGGGGAGAGAACAGAATAATATTCTGGAAGTTCCTTTTTTTTGAATTTTTTCCATTTTATTTCCAGAGTTTGGTGTTCTGAGAAACTTTCTAGAAGTGGAAATTTTCTAAAATATCATTGTTTTTACAAATGTCTGGTTTTCTGGAAAAATGGAAATTTTGCATTTCCGGAAAACTGGTTTTCTGAATTTGTTGAAATTTTGGAATTATTACAAACTTAAAATTTTGGTTTTCTGGGAACTTTTGAATTTTTGAACTTTTCGATTTTTGGGAAATTTGCAATGTTTTGGATTTTTACGAAATTTTGAATGAAATGGGACTTATTCGAATTTTTTTAAATTTCCGGAAAATCGAATTATTGAAATTTTTTGGATTTTCGGAATTTGAGGAAATC</canonical>
            <polymorphic>TTTGAAGAATTTTTGGATTTTTTCAAAACTTTGAAATTTTAAAAACCTTCAAAACCAAACATTAGCATCTCGGAGGGAAATTCAAAAATAGATTTTTCCGAATTTTTCGCAGTTTCAAAAAATCCGACTATTAGTTCACATGAACTGATTCTAGAATCAAAATTTCAAAGAAGTCACCTCCTCCAAAAGTGAATTTCAAAACTAAATAAAATAAAAAGAAAAGAAAAATAAGAAAATAGCAAAAAAAAAAGCGGAGCCGTTTTTCTTTCGTCTTCCCTCCGGAGTGTGGCTATAAATTTAGCGTCGATTTGATGATGACGTAGTTAGGGCCACCAGCCTCACCTTTTTTGGGAGGAGGGTCTTCTTTTTTTGTTGCAAAATTCGCTCTATTGATAATAGTATGAATAGAGCGAATTTGCTGCAGAAGGAGGGTAAAAAGTGACGTTTTGAAAATTTTTGTTTGGTGATAAAAAACAAAACATATTTAGGTAGAGATAGAKAGCTAGAGAGGAAGTGAAGAGGCGGTGATAACCGAATTTCTTCTTGTTTTATTTTTTTATTTGGATTTTGATGACAAGCCAATAGGGGATTATCAAGATATTTATTATGGGGAGAGAACAGAATAATATTCTGGAAGTTCCTTTTTTTTGAATTTTTTCCATTTTATTTCCAGAGTTTGGTGTTCTGAGAAACTTTCTAGAAGTGGAAATTTTCTAAAATATCATTGTTTTTACAAATGTCTGGTTTTCTGGAAAAATGGAAATTTTGCATTTCCGGAAAACTGGTTTTCTGAATTTGTTGAAATTTTGGAATTATTACAAACTTAAAATTTTGGTTTTCTGGGAACTTTTGAATTTTTGAACTTTTCGATTTTTGGGAAATTTGCAATGTTTTGGATTTTTACGAAATTTTGAATGAAATGGGACTTATTCGAATTTTTTTAAATTTCCGGAAAATCGAATTATTGAAATTTTTTGGATTTTCGGAATTTGAGGAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACGTTTTGAAAATTTTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCTCAGAACACCAAACTCTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GACGTTTTGAAAATTTTTGTTTGGTGATAAAAAACAAAACATATTTAGGTAGAGATAGAGAGCTAGAGAGGAAGTGAAGAGGCGGTGATAACCGAATTTCTTCTTGTTTTATTTTTTTATTTGGATTTTGATGACAAGCCAATAGGGGATTATCAAGATATTTATTATGGGGAGAGAACAGAATAATATTCTGGAAGTTCCTTTTTTTTGAATTTTTTCCATTTTATTTCCAGAGTTTGGTGTTCTGAGAA</canonical_amplicon>
		<polymorphic_amplicon>GACGTTTTGAAAATTTTTGTTTGGTGATAAAAAACAAAACATATTTAGGTAGAGATAGAKAGCTAGAGAGGAAGTGAAGAGGCGGTGATAACCGAATTTCTTCTTGTTTTATTTTTTTATTTGGATTTTGATGACAAGCCAATAGGGGATTATCAAGATATTTATTATGGGGAGAGAACAGAATAATATTCTGGAAGTTCCTTTTTTTTGAATTTTTTCCATTTTATTTCCAGAGTTTGGTGTTCTGAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1516</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>238535</contig_pos>
        <strand>+</strand>
        <context>TCTGGAAGTT[C/T]CTTTTTTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATCAAGATATTTATTATGGGGAGAGAACAGAATAATATTCTGGAAGTT</left_flank>
        <right_flank>CTTTTTTTTGAATTTTTTCCATTTTATTTCCAGAGTTTGGTGTTCTGAGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAACTGATTCTAGAATCAAAATTTCAAAGAAGTCACCTCCTCCAAAAGTGAATTTCAAAACTAAATAAAATAAAAAGAAAAGAAAAATAAGAAAATAGCAAAAAAAAAAGCGGAGCCGTTTTTCTTTCGTCTTCCCTCCGGAGTGTGGCTATAAATTTAGCGTCGATTTGATGATGACGTAGTTAGGGCCACCAGCCTCACCTTTTTTGGGAGGAGGGTCTTCTTTTTTTGTTGCAAAATTCGCTCTATTGATAATAGTATGAATAGAGCGAATTTGCTGCAGAAGGAGGGTAAAAAGTGACGTTTTGAAAATTTTTGTTTGGTGATAAAAAACAAAACATATTTAGGTAGAGATAGAGAGCTAGAGAGGAAGTGAAGAGGCGGTGATAACCGAATTTCTTCTTGTTTTATTTTTTTATTTGGATTTTGATGACAAGCCAATAGGGGATTATCAAGATATTTATTATGGGGAGAGAACAGAATAATATTCTGGAAGTTCCTTTTTTTTGAATTTTTTCCATTTTATTTCCAGAGTTTGGTGTTCTGAGAAACTTTCTAGAAGTGGAAATTTTCTAAAATATCATTGTTTTTACAAATGTCTGGTTTTCTGGAAAAATGGAAATTTTGCATTTCCGGAAAACTGGTTTTCTGAATTTGTTGAAATTTTGGAATTATTACAAACTTAAAATTTTGGTTTTCTGGGAACTTTTGAATTTTTGAACTTTTCGATTTTTGGGAAATTTGCAATGTTTTGGATTTTTACGAAATTTTGAATGAAATGGGACTTATTCGAATTTTTTTAAATTTCCGGAAAATCGAATTATTGAAATTTTTTGGATTTTCGGAATTTGAGGAAATCAAAGTTTAGCAACTTTCGAATTTTTGTAAAACTGAAATTTTAGAACTTTTGAATTTTTGTAAAATTGAAATTCGTTCAATTTTATAGGAAGTTAAAATTTTCAATGAATTGAAATTTTTGGAAATTTTTGTCAAATTGAA</canonical>
            <polymorphic>TGAACTGATTCTAGAATCAAAATTTCAAAGAAGTCACCTCCTCCAAAAGTGAATTTCAAAACTAAATAAAATAAAAAGAAAAGAAAAATAAGAAAATAGCAAAAAAAAAAGCGGAGCCGTTTTTCTTTCGTCTTCCCTCCGGAGTGTGGCTATAAATTTAGCGTCGATTTGATGATGACGTAGTTAGGGCCACCAGCCTCACCTTTTTTGGGAGGAGGGTCTTCTTTTTTTGTTGCAAAATTCGCTCTATTGATAATAGTATGAATAGAGCGAATTTGCTGCAGAAGGAGGGTAAAAAGTGACGTTTTGAAAATTTTTGTTTGGTGATAAAAAACAAAACATATTTAGGTAGAGATAGAGAGCTAGAGAGGAAGTGAAGAGGCGGTGATAACCGAATTTCTTCTTGTTTTATTTTTTTATTTGGATTTTGATGACAAGCCAATAGGGGATTATCAAGATATTTATTATGGGGAGAGAACAGAATAATATTCTGGAAGTTYCTTTTTTTTGAATTTTTTCCATTTTATTTCCAGAGTTTGGTGTTCTGAGAAACTTTCTAGAAGTGGAAATTTTCTAAAATATCATTGTTTTTACAAATGTCTGGTTTTCTGGAAAAATGGAAATTTTGCATTTCCGGAAAACTGGTTTTCTGAATTTGTTGAAATTTTGGAATTATTACAAACTTAAAATTTTGGTTTTCTGGGAACTTTTGAATTTTTGAACTTTTCGATTTTTGGGAAATTTGCAATGTTTTGGATTTTTACGAAATTTTGAATGAAATGGGACTTATTCGAATTTTTTTAAATTTCCGGAAAATCGAATTATTGAAATTTTTTGGATTTTCGGAATTTGAGGAAATCAAAGTTTAGCAACTTTCGAATTTTTGTAAAACTGAAATTTTAGAACTTTTGAATTTTTGTAAAATTGAAATTCGTTCAATTTTATAGGAAGTTAAAATTTTCAATGAATTGAAATTTTTGGAAATTTTTGTCAAATTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTATTTGGATTTTGATGACAAG</pcr_primer_p1>
		<pcr_primer_p2>TCAACAAATTCAGAAAACCAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTATTTGGATTTTGATGACAAGCCAATAGGGGATTATCAAGATATTTATTATGGGGAGAGAACAGAATAATATTCTGGAAGTTCCTTTTTTTTGAATTTTTTCCATTTTATTTCCAGAGTTTGGTGTTCTGAGAAACTTTCTAGAAGTGGAAATTTTCTAAAATATCATTGTTTTTACAAATGTCTGGTTTTCTGGAAAAATGGAAATTTTGCATTTCCGGAAAACTGGTTTTCTGAATTTGTTGA</canonical_amplicon>
		<polymorphic_amplicon>TTTATTTGGATTTTGATGACAAGCCAATAGGGGATTATCAAGATATTTATTATGGGGAGAGAACAGAATAATATTCTGGAAGTTYCTTTTTTTTGAATTTTTTCCATTTTATTTCCAGAGTTTGGTGTTCTGAGAAACTTTCTAGAAGTGGAAATTTTCTAAAATATCATTGTTTTTACAAATGTCTGGTTTTCTGGAAAAATGGAAATTTTGCATTTCCGGAAAACTGGTTTTCTGAATTTGTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1517</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>238621</contig_pos>
        <strand>+</strand>
        <context>AAAATATCAT[C/T]GTTTTTACAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGGTGTTCTGAGAAACTTTCTAGAAGTGGAAATTTTCTAAAATATCAT</left_flank>
        <right_flank>GTTTTTACAAATGTCTGGTTTTCTGGAAAAATGGAAATTTTGCATTTCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAAGAAAATAGCAAAAAAAAAAGCGGAGCCGTTTTTCTTTCGTCTTCCCTCCGGAGTGTGGCTATAAATTTAGCGTCGATTTGATGATGACGTAGTTAGGGCCACCAGCCTCACCTTTTTTGGGAGGAGGGTCTTCTTTTTTTGTTGCAAAATTCGCTCTATTGATAATAGTATGAATAGAGCGAATTTGCTGCAGAAGGAGGGTAAAAAGTGACGTTTTGAAAATTTTTGTTTGGTGATAAAAAACAAAACATATTTAGGTAGAGATAGAGAGCTAGAGAGGAAGTGAAGAGGCGGTGATAACCGAATTTCTTCTTGTTTTATTTTTTTATTTGGATTTTGATGACAAGCCAATAGGGGATTATCAAGATATTTATTATGGGGAGAGAACAGAATAATATTCTGGAAGTTCCTTTTTTTTGAATTTTTTCCATTTTATTTCCAGAGTTTGGTGTTCTGAGAAACTTTCTAGAAGTGGAAATTTTCTAAAATATCATTGTTTTTACAAATGTCTGGTTTTCTGGAAAAATGGAAATTTTGCATTTCCGGAAAACTGGTTTTCTGAATTTGTTGAAATTTTGGAATTATTACAAACTTAAAATTTTGGTTTTCTGGGAACTTTTGAATTTTTGAACTTTTCGATTTTTGGGAAATTTGCAATGTTTTGGATTTTTACGAAATTTTGAATGAAATGGGACTTATTCGAATTTTTTTAAATTTCCGGAAAATCGAATTATTGAAATTTTTTGGATTTTCGGAATTTGAGGAAATCAAAGTTTAGCAACTTTCGAATTTTTGTAAAACTGAAATTTTAGAACTTTTGAATTTTTGTAAAATTGAAATTCGTTCAATTTTATAGGAAGTTAAAATTTTCAATGAATTGAAATTTTTGGAAATTTTTGTCAAATTGAAATTTTGGAACTTTAGAATCTCAGAAACTTTGGAAAATTGAAAATTTGGAAGTTTCCAAGTTTTGAATTTTTGAAATTTCACAAAAT</canonical>
            <polymorphic>AATAAGAAAATAGCAAAAAAAAAAGCGGAGCCGTTTTTCTTTCGTCTTCCCTCCGGAGTGTGGCTATAAATTTAGCGTCGATTTGATGATGACGTAGTTAGGGCCACCAGCCTCACCTTTTTTGGGAGGAGGGTCTTCTTTTTTTGTTGCAAAATTCGCTCTATTGATAATAGTATGAATAGAGCGAATTTGCTGCAGAAGGAGGGTAAAAAGTGACGTTTTGAAAATTTTTGTTTGGTGATAAAAAACAAAACATATTTAGGTAGAGATAGAGAGCTAGAGAGGAAGTGAAGAGGCGGTGATAACCGAATTTCTTCTTGTTTTATTTTTTTATTTGGATTTTGATGACAAGCCAATAGGGGATTATCAAGATATTTATTATGGGGAGAGAACAGAATAATATTCTGGAAGTTCCTTTTTTTTGAATTTTTTCCATTTTATTTCCAGAGTTTGGTGTTCTGAGAAACTTTCTAGAAGTGGAAATTTTCTAAAATATCATYGTTTTTACAAATGTCTGGTTTTCTGGAAAAATGGAAATTTTGCATTTCCGGAAAACTGGTTTTCTGAATTTGTTGAAATTTTGGAATTATTACAAACTTAAAATTTTGGTTTTCTGGGAACTTTTGAATTTTTGAACTTTTCGATTTTTGGGAAATTTGCAATGTTTTGGATTTTTACGAAATTTTGAATGAAATGGGACTTATTCGAATTTTTTTAAATTTCCGGAAAATCGAATTATTGAAATTTTTTGGATTTTCGGAATTTGAGGAAATCAAAGTTTAGCAACTTTCGAATTTTTGTAAAACTGAAATTTTAGAACTTTTGAATTTTTGTAAAATTGAAATTCGTTCAATTTTATAGGAAGTTAAAATTTTCAATGAATTGAAATTTTTGGAAATTTTTGTCAAATTGAAATTTTGGAACTTTAGAATCTCAGAAACTTTGGAAAATTGAAAATTTGGAAGTTTCCAAGTTTTGAATTTTTGAAATTTCACAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTATTTCCAGAGTTTGGTGT</pcr_primer_p1>
		<pcr_primer_p2>AATTTCGTAAAAATCCAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTTATTTCCAGAGTTTGGTGTTCTGAGAAACTTTCTAGAAGTGGAAATTTTCTAAAATATCATTGTTTTTACAAATGTCTGGTTTTCTGGAAAAATGGAAATTTTGCATTTCCGGAAAACTGGTTTTCTGAATTTGTTGAAATTTTGGAATTATTACAAACTTAAAATTTTGGTTTTCTGGGAACTTTTGAATTTTTGAACTTTTCGATTTTTGGGAAATTTGCAATGTTTTGGATTTTTACGAAATT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTATTTCCAGAGTTTGGTGTTCTGAGAAACTTTCTAGAAGTGGAAATTTTCTAAAATATCATYGTTTTTACAAATGTCTGGTTTTCTGGAAAAATGGAAATTTTGCATTTCCGGAAAACTGGTTTTCTGAATTTGTTGAAATTTTGGAATTATTACAAACTTAAAATTTTGGTTTTCTGGGAACTTTTGAATTTTTGAACTTTTCGATTTTTGGGAAATTTGCAATGTTTTGGATTTTTACGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1518</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>240534</contig_pos>
        <strand>+</strand>
        <context>TTCTGAAACT[C/T]TTTACTGATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAAAGAAAATATTATAGAATTTTAGAATTTTTGGATTTTCTGAAACT</left_flank>
        <right_flank>TTTACTGATTGGAGTATTCAAAACACACACATTTTCATGGTGAATGCTCT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAAGTATTATGCTGTTGATGATAAATGAATTAGGAGGAAGTCAGAAGCGGAAAAAGAGAAAAAGATATTTTTTTGGAAGGAAGAAGACTGAGAGAGGAAAGAGATAAGAATATTATATGGATATTTATCTCTTTTTTTTCGAAAAAAAATAAATCCAAAATGGCATGAATGACACATTGTTTAGGATGGCATGGACTTGGATTTAGATTGAGAACGGAAATTGAAAAAAATAGACAGGATTATAAATTGTGTCTTGCTTTGCGTCAGAAGATGTAGGGGTTTTTTTTCGGTAGAAGACCGAAATTTTAAAAAATTTGAAATTTTTTACCAAAAATATACAATGATTTTCAGGTTTTTTATAGCATTTTGAAAATTTAAGAAAAAACTGACAAAGCAAATTAAATATATATTTTTGGAAAATTCTGGCTTTCTAAGAACTTGTCAAAAAAAAAGAAAATATTATAGAATTTTAGAATTTTTGGATTTTCTGAAACTCTTTACTGATTGGAGTATTCAAAACACACACATTTTCATGGTGAATGCTCTAATCGAAGGAAAAAGTTTTTTTCTTAGAATTTCTCAAATTCAAAAACCAATTGAAGCGTAAAAAGTGCATGTTATTACCTGTAACAACGCGTCTTGAATTGAACATTTCTTCTGAATTTTCTGCTCTTCTGAAGATGTGAAAATTTGAATATCGAGACCCGTTGAAGCTCTGAAAGTTTTGAACTATTGATATATTGAAAAAACTGGGGAGGAAAATAGAATAATTGAAAACAGATGAGGCAAAAAAAGCAGGGATTGAAAACGGAACAGACTGGGAAAAACAATAGAAAAGATGAGCAATTTTTATGAACATGTTCAATGGGTGGTTTAGGATTTTAGACGAGTGAAATGGCTTTCAGATGTTGGGGATTTTCTGAGAAATATATATGATCTTTGGGATGAGATTTTGAAAATTTAGAGATTAAAAAAATTAAATTTTTAATTTTTTAA</canonical>
            <polymorphic>AAAAAAAGTATTATGCTGTTGATGATAAATGAATTAGGAGGAAGTCAGAAGCGGAAAAAGAGAAAAAGATATTTTTTTGGAAGGAAGAAGACTGAGAGAGGAAAGAGATAAGAATATTATATGGATATTTATCTCTTTTTTTTCGAAAAAAAATAAATCCAAAATGGCATGAATGACACATTGTTTAGGATGGCATGGACTTGGATTTAGATTGAGAACGGAAATTGAAAAAAATAGACAGGATTATAAATTGTGTCTTGCTTTGCGTCAGAAGATGTAGGGGTTTTTTTTCGGTAGAAGACCGAAATTTTAAAAAATTTGAAATTTTTTACCAAAAATATACAATGATTTTCAGGTTTTTTATAGCATTTTGAAAATTTAAGAAAAAACTGACAAAGCAAATTAAATATATATTTTTGGAAAATTCTGGCTTTCTAAGAACTTGTCAAAAAAAAAGAAAATATTATAGAATTTTAGAATTTTTGGATTTTCTGAAACTYTTTACTGATTGGAGTATTCAAAACACACACATTTTCATGGTGAATGCTCTAATCGAAGGAAAAAGTTTTTTTCTTAGAATTTCTCAAATTCAAAAACCAATTGAAGCGTAAAAAGTGCATGTTATTACCTGTAACAACGCGTCTTGAATTGAACATTTCTTCTGAATTTTCTGCTCTTCTGAAGATGTGAAAATTTGAATATCGAGACCCGTTGAAGCTCTGAAAGTTTTGAACTATTGATATATTGAAAAAACTGGGGAGGAAAATAGAATAATTGAAAACAGATGAGGCAAAAAAAGCAGGGATTGAAAACGGAACAGACTGGGAAAAACAATAGAAAAGATGAGCAATTTTTATGAACATGTTCAATGGGTGGTTTAGGATTTTAGACGAGTGAAATGGCTTTCAGATGTTGGGGATTTTCTGAGAAATATATATGATCTTTGGGATGAGATTTTGAAAATTTAGAGATTAAAAAAATTAAATTTTTAATTTTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGGCTTTCTAAGAACTTGT</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTCAGAAGAAATGTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGGCTTTCTAAGAACTTGTCAAAAAAAAAGAAAATATTATAGAATTTTAGAATTTTTGGATTTTCTGAAACTCTTTACTGATTGGAGTATTCAAAACACACACATTTTCATGGTGAATGCTCTAATCGAAGGAAAAAGTTTTTTTCTTAGAATTTCTCAAATTCAAAAACCAATTGAAGCGTAAAAAGTGCATGTTATTACCTGTAACAACGCGTCTTGAATTGAACATTTCTTCTGAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGGCTTTCTAAGAACTTGTCAAAAAAAAAGAAAATATTATAGAATTTTAGAATTTTTGGATTTTCTGAAACTYTTTACTGATTGGAGTATTCAAAACACACACATTTTCATGGTGAATGCTCTAATCGAAGGAAAAAGTTTTTTTCTTAGAATTTCTCAAATTCAAAAACCAATTGAAGCGTAAAAAGTGCATGTTATTACCTGTAACAACGCGTCTTGAATTGAACATTTCTTCTGAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1519</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>240338</contig_pos>
        <strand></strand>
        <context>GTAGAAGACC[G/C]AAATTTTAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TGTCTTGCTTTGCGTCAGAAGATGTAGGGGTTTTTTTTCGGTAGAAGACC</left_flank>
        <right_flank>AAATTTTAAAAAATTTGAAATTTTTTACCAAAAATATACAATGATTTTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGGCGTCTAGTGTGGCGCAAGATACGCAAACACCGCTACGTCAAAATGCACACTTTGCAAAATTCAAAAATTAATTTCAGCTGGGTGCAAGAAAATCATCGATAAAACGAAATTAAAAGCCAAATTATTTCTGATTTTCAGTTTATAAAAAACCTTTAAAAATTTTTTCAAAATTTTCAGCTAGTCTTTCATCAAAAAAAAGTATTATGCTGTTGATGATAAATGAATTAGGAGGAAGTCAGAAGCGGAAAAAGAGAAAAAGATATTTTTTTGGAAGGAAGAAGACTGAGAGAGGAAAGAGATAAGAATATTATATGGATATTTATCTCTTTTTTTTCGAAAAAAAATAAATCCAAAATGGCATGAATGACACATTGTTTAGGATGGCATGGACTTGGATTTAGATTGAGAACGGAAATTGAAAAAAATAGACAGGATTATAAATTGTGTCTTGCTTTGCGTCAGAAGATGTAGGGGTTTTTTTTCGGTAGAAGACCGAAATTTTAAAAAATTTGAAATTTTTTACCAAAAATATACAATGATTTTCAGGTTTTTTATAGCATTTTGAAAATTTAAGAAAAAACTGACAAAGCAAATTAAATATATATTTTTGGAAAATTCTGGCTTTCTAAGAACTTGTCAAAAAAAAAGAAAATATTATAGAATTTTAGAATTTTTGGATTTTCTGAAACTCTTTACTGATTGGAGTATTCAAAACACACACATTTTCATGGTGAATGCTCTAATCGAAGGAAAAAGTTTTTTTCTTAGAATTTCTCAAATTCAAAAACCAATTGAAGCGTAAAAAGTGCATGTTATTACCTGTAACAACGCGTCTTGAATTGAACATTTCTTCTGAATTTTCTGCTCTTCTGAAGATGTGAAAATTTGAATATCGAGACCCGTTGAAGCTCTGAAAGTTTTGAACTATTGATATATTGAAAAAACTGGGGAGGAAAATAGAATAATTGAAAACAGATGAGGCAAAAAAAGCAGGG</canonical>
            <polymorphic>TGTGGCGTCTAGTGTGGCGCAAGATACGCAAACACCGCTACGTCAAAATGCACACTTTGCAAAATTCAAAAATTAATTTCAGCTGGGTGCAAGAAAATCATCGATAAAACGAAATTAAAAGCCAAATTATTTCTGATTTTCAGTTTATAAAAAACCTTTAAAAATTTTTTCAAAATTTTCAGCTAGTCTTTCATCAAAAAAAAGTATTATGCTGTTGATGATAAATGAATTAGGAGGAAGTCAGAAGCGGAAAAAGAGAAAAAGATATTTTTTTGGAAGGAAGAAGACTGAGAGAGGAAAGAGATAAGAATATTATATGGATATTTATCTCTTTTTTTTCGAAAAAAAATAAATCCAAAATGGCATGAATGACACATTGTTTAGGATGGCATGGACTTGGATTTAGATTGAGAACGGAAATTGAAAAAAATAGACAGGATTATAAATTGTGTCTTGCTTTGCGTCAGAAGATGTAGGGGTTTTTTTTCGGTAGAAGACCSAAATTTTAAAAAATTTGAAATTTTTTACCAAAAATATACAATGATTTTCAGGTTTTTTATAGCATTTTGAAAATTTAAGAAAAAACTGACAAAGCAAATTAAATATATATTTTTGGAAAATTCTGGCTTTCTAAGAACTTGTCAAAAAAAAAGAAAATATTATAGAATTTTAGAATTTTTGGATTTTCTGAAACTCTTTACTGATTGGAGTATTCAAAACACACACATTTTCATGGTGAATGCTCTAATCGAAGGAAAAAGTTTTTTTCTTAGAATTTCTCAAATTCAAAAACCAATTGAAGCGTAAAAAGTGCATGTTATTACCTGTAACAACGCGTCTTGAATTGAACATTTCTTCTGAATTTTCTGCTCTTCTGAAGATGTGAAAATTTGAATATCGAGACCCGTTGAAGCTCTGAAAGTTTTGAACTATTGATATATTGAAAAAACTGGGGAGGAAAATAGAATAATTGAAAACAGATGAGGCAAAAAAAGCAGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGACTTGGATTTAGATTGAGAAC</pcr_primer_p1>
		<pcr_primer_p2>ACAAGTTCTTAGAAAGCCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGACTTGGATTTAGATTGAGAACGGAAATTGAAAAAAATAGACAGGATTATAAATTGTGTCTTGCTTTGCGTCAGAAGATGTAGGGGTTTTTTTTCGGTAGAAGACCGAAATTTTAAAAAATTTGAAATTTTTTACCAAAAATATACAATGATTTTCAGGTTTTTTATAGCATTTTGAAAATTTAAGAAAAAACTGACAAAGCAAATTAAATATATATTTTTGGAAAATTCTGGCTTTCTAAGAACTTGT</canonical_amplicon>
		<polymorphic_amplicon>GGACTTGGATTTAGATTGAGAACGGAAATTGAAAAAAATAGACAGGATTATAAATTGTGTCTTGCTTTGCGTCAGAAGATGTAGGGGTTTTTTTTCGGTAGAAGACCSAAATTTTAAAAAATTTGAAATTTTTTACCAAAAATATACAATGATTTTCAGGTTTTTTATAGCATTTTGAAAATTTAAGAAAAAACTGACAAAGCAAATTAAATATATATTTTTGGAAAATTCTGGCTTTCTAAGAACTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1520</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>252338</contig_pos>
        <strand>+</strand>
        <context>ATGCCTCAGC[C/G]CTCAGGTCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTTCGCGCCTGTCTCTTTATTTCGCGCCCAAACGTCAACAATGCCTCAGC</left_flank>
        <right_flank>CTCAGGTCAAGAGCTATCCGTGGTCGCAATCTTCAAAACCGATTCTAAGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACCCACTTTTCACTTTCGCATTGTCGTCGTGTGTTGCCGCGCCGCAACATGGCTAAAGCCTCAATGACTATATAGCTGGGAACAGAGAGGTTAGAGGGAGAAAAGAGAGGAAGAGAATCTGCTGGATAGTATCAATTCGTTATGAGTCATTTTTTGAGGATTTTATGGGGAAGTGGAAATGCTATTTGGTGATTAAACATCTCGAGGACAAGCTAGGCTGGCACACATCTGCCTTATTTTCTTATAACTTCTGAACAATTTCTTTTTTTTATTTGGAAGGAAACGGACTAGCCCGAAGAGCTGTTTGGTCCCTACAATATTTTTATTGTTGCCAGCCATTTTTGAAGACGCCCGGATGGTCCCGCTACGCGTCACACGTCAAGACGGAAGTACAATTCTGCAAGACCACCCTTGGCTAATAAAAACGATTTAGATGAACTTTTACAACTTCGCGCCTGTCTCTTTATTTCGCGCCCAAACGTCAACAATGCCTCAGCGCTCAGGTCAAGAGCTATCCGTGGTCGCAATCTTCAAAACCGATTCTAAGTGATGCGAATCATCTCTCGTCTCGGTCAAAAAAAAGAATTTTCGTACAGCGAACGGAAAACCAGACGACGTAAAAATGCATTCGTCATGCGTTAAATCCATCGAGAATCAAGAAGTTCTAGCTGGTTTTTCTAGGCAACTTTGCTTCAAGACACACGAATTGCTTCAATTCAGTACCGTTGGCGCAAACGACTCAAGCGTCGAGTTGACGATGGCGATGGTACGAAGACCGGTGAACGGCAACGCGTCGATCTTCACATCCTTTCCGTTGGAAATGTGCAACTCGTCGATTCGATTCGTTCCGATACTCTGAGCTATCGATCGAACATCGACTCCGTCACACTCCAGCACTATCAGATTTTTTGAGACCTAAAAAATTGGAAATTTCAAATTGTAAAGCTTTTGACACACTCACTTTACAAGTACATTTTTCTGGGGTTCGTGGACAAGTG</canonical>
            <polymorphic>TGACCCACTTTTCACTTTCGCATTGTCGTCGTGTGTTGCCGCGCCGCAACATGGCTAAAGCCTCAATGACTATATAGCTGGGAACAGAGAGGTTAGAGGGAGAAAAGAGAGGAAGAGAATCTGCTGGATAGTATCAATTCGTTATGAGTCATTTTTTGAGGATTTTATGGGGAAGTGGAAATGCTATTTGGTGATTAAACATCTCGAGGACAAGCTAGGCTGGCACACATCTGCCTTATTTTCTTATAACTTCTGAACAATTTCTTTTTTTTATTTGGAAGGAAACGGACTAGCCCGAAGAGCTGTTTGGTCCCTACAATATTTTTATTGTTGCCAGCCATTTTTGAAGACGCCCGGATGGTCCCGCTACGCGTCACACGTCAAGACGGAAGTACAATTCTGCAAGACCACCCTTGGCTAATAAAAACGATTTAGATGAACTTTTACAACTTCGCGCCTGTCTCTTTATTTCGCGCCCAAACGTCAACAATGCCTCAGCSCTCAGGTCAAGAGCTATCCGTGGTCGCAATCTTCAAAACCGATTCTAAGTGATGCGAATCATCTCTCGTCTCGGTCAAAAAAAAGAATTTTCGTACAGCGAACGGAAAACCAGACGACGTAAAAATGCATTCGTCATGCGTTAAATCCATCGAGAATCAAGAAGTTCTAGCTGGTTTTTCTAGGCAACTTTGCTTCAAGACACACGAATTGCTTCAATTCAGTACCGTTGGCGCAAACGACTCAAGCGTCGAGTTGACGATGGCGATGGTACGAAGACCGGTGAACGGCAACGCGTCGATCTTCACATCCTTTCCGTTGGAAATGTGCAACTCGTCGATTCGATTCGTTCCGATACTCTGAGCTATCGATCGAACATCGACTCCGTCACACTCCAGCACTATCAGATTTTTTGAGACCTAAAAAATTGGAAATTTCAAATTGTAAAGCTTTTGACACACTCACTTTACAAGTACATTTTTCTGGGGTTCGTGGACAAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCGCT</site>
                <isoschizomers>
                    <enzyme>AfeI</enzyme>
                    <enzyme>Aor51HI</enzyme>
                    <enzyme>Eco47III</enzyme>
                    <enzyme>FunI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>413 267 233 43 25 19</canonical_bands>
                <polymorphic_bands>413 267 258 43 19</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTGGCTAATAAAAACGATTTAG</pcr_primer_p1>
		<pcr_primer_p2>CTTGATTCTCGATGGATTTAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTGGCTAATAAAAACGATTTAGATGAACTTTTACAACTTCGCGCCTGTCTCTTTATTTCGCGCCCAAACGTCAACAATGCCTCAGCGCTCAGGTCAAGAGCTATCCGTGGTCGCAATCTTCAAAACCGATTCTAAGTGATGCGAATCATCTCTCGTCTCGGTCAAAAAAAAGAATTTTCGTACAGCGAACGGAAAACCAGACGACGTAAAAATGCATTCGTCATGCGTTAAATCCATCGAGAATCAAG</canonical_amplicon>
		<polymorphic_amplicon>CTTGGCTAATAAAAACGATTTAGATGAACTTTTACAACTTCGCGCCTGTCTCTTTATTTCGCGCCCAAACGTCAACAATGCCTCAGCSCTCAGGTCAAGAGCTATCCGTGGTCGCAATCTTCAAAACCGATTCTAAGTGATGCGAATCATCTCTCGTCTCGGTCAAAAAAAAGAATTTTCGTACAGCGAACGGAAAACCAGACGACGTAAAAATGCATTCGTCATGCGTTAAATCCATCGAGAATCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1521</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>252439</contig_pos>
        <strand></strand>
        <context>TCGTACAGCG[A/G]ACGGAAAACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATGCGAATCATCTCTCGTCTCGGTCAAAAAAAAGAATTTTCGTACAGCG</left_flank>
        <right_flank>ACGGAAAACCAGACGACGTAAAAATGCATTCGTCATGCGTTAAATCCATC</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAGAGAGGAAGAGAATCTGCTGGATAGTATCAATTCGTTATGAGTCATTTTTTGAGGATTTTATGGGGAAGTGGAAATGCTATTTGGTGATTAAACATCTCGAGGACAAGCTAGGCTGGCACACATCTGCCTTATTTTCTTATAACTTCTGAACAATTTCTTTTTTTTATTTGGAAGGAAACGGACTAGCCCGAAGAGCTGTTTGGTCCCTACAATATTTTTATTGTTGCCAGCCATTTTTGAAGACGCCCGGATGGTCCCGCTACGCGTCACACGTCAAGACGGAAGTACAATTCTGCAAGACCACCCTTGGCTAATAAAAACGATTTAGATGAACTTTTACAACTTCGCGCCTGTCTCTTTATTTCGCGCCCAAACGTCAACAATGCCTCAGCGCTCAGGTCAAGAGCTATCCGTGGTCGCAATCTTCAAAACCGATTCTAAGTGATGCGAATCATCTCTCGTCTCGGTCAAAAAAAAGAATTTTCGTACAGCGAACGGAAAACCAGACGACGTAAAAATGCATTCGTCATGCGTTAAATCCATCGAGAATCAAGAAGTTCTAGCTGGTTTTTCTAGGCAACTTTGCTTCAAGACACACGAATTGCTTCAATTCAGTACCGTTGGCGCAAACGACTCAAGCGTCGAGTTGACGATGGCGATGGTACGAAGACCGGTGAACGGCAACGCGTCGATCTTCACATCCTTTCCGTTGGAAATGTGCAACTCGTCGATTCGATTCGTTCCGATACTCTGAGCTATCGATCGAACATCGACTCCGTCACACTCCAGCACTATCAGATTTTTTGAGACCTAAAAAATTGGAAATTTCAAATTGTAAAGCTTTTGACACACTCACTTTACAAGTACATTTTTCTGGGGTTCGTGGACAAGTGACATCGGCAAATGTTGATGTGAGGAGGTGGGCAAGCACGACGAATGCGTGAATGAGCATCCACCTCATTCTGTTCCTTCTGATGGTCGAGGAAAGAATGAC</canonical>
            <polymorphic>GAAAAGAGAGGAAGAGAATCTGCTGGATAGTATCAATTCGTTATGAGTCATTTTTTGAGGATTTTATGGGGAAGTGGAAATGCTATTTGGTGATTAAACATCTCGAGGACAAGCTAGGCTGGCACACATCTGCCTTATTTTCTTATAACTTCTGAACAATTTCTTTTTTTTATTTGGAAGGAAACGGACTAGCCCGAAGAGCTGTTTGGTCCCTACAATATTTTTATTGTTGCCAGCCATTTTTGAAGACGCCCGGATGGTCCCGCTACGCGTCACACGTCAAGACGGAAGTACAATTCTGCAAGACCACCCTTGGCTAATAAAAACGATTTAGATGAACTTTTACAACTTCGCGCCTGTCTCTTTATTTCGCGCCCAAACGTCAACAATGCCTCAGCGCTCAGGTCAAGAGCTATCCGTGGTCGCAATCTTCAAAACCGATTCTAAGTGATGCGAATCATCTCTCGTCTCGGTCAAAAAAAAGAATTTTCGTACAGCGRACGGAAAACCAGACGACGTAAAAATGCATTCGTCATGCGTTAAATCCATCGAGAATCAAGAAGTTCTAGCTGGTTTTTCTAGGCAACTTTGCTTCAAGACACACGAATTGCTTCAATTCAGTACCGTTGGCGCAAACGACTCAAGCGTCGAGTTGACGATGGCGATGGTACGAAGACCGGTGAACGGCAACGCGTCGATCTTCACATCCTTTCCGTTGGAAATGTGCAACTCGTCGATTCGATTCGTTCCGATACTCTGAGCTATCGATCGAACATCGACTCCGTCACACTCCAGCACTATCAGATTTTTTGAGACCTAAAAAATTGGAAATTTCAAATTGTAAAGCTTTTGACACACTCACTTTACAAGTACATTTTTCTGGGGTTCGTGGACAAGTGACATCGGCAAATGTTGATGTGAGGAGGTGGGCAAGCACGACGAATGCGTGAATGAGCATCCACCTCATTCTGTTCCTTCTGATGGTCGAGGAAAGAATGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGGCTAATAAAAACGATTTAG</pcr_primer_p1>
		<pcr_primer_p2>CTTGATTCTCGATGGATTTAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTGGCTAATAAAAACGATTTAGATGAACTTTTACAACTTCGCGCCTGTCTCTTTATTTCGCGCCCAAACGTCAACAATGCCTCAGCGCTCAGGTCAAGAGCTATCCGTGGTCGCAATCTTCAAAACCGATTCTAAGTGATGCGAATCATCTCTCGTCTCGGTCAAAAAAAAGAATTTTCGTACAGCGAACGGAAAACCAGACGACGTAAAAATGCATTCGTCATGCGTTAAATCCATCGAGAATCAAG</canonical_amplicon>
		<polymorphic_amplicon>CTTGGCTAATAAAAACGATTTAGATGAACTTTTACAACTTCGCGCCTGTCTCTTTATTTCGCGCCCAAACGTCAACAATGCCTCAGCGCTCAGGTCAAGAGCTATCCGTGGTCGCAATCTTCAAAACCGATTCTAAGTGATGCGAATCATCTCTCGTCTCGGTCAAAAAAAAGAATTTTCGTACAGCGRACGGAAAACCAGACGACGTAAAAATGCATTCGTCATGCGTTAAATCCATCGAGAATCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1522</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>260534</contig_pos>
        <strand></strand>
        <context>GAAAACCATA[G/T]KAGAATTTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATA</left_flank>
        <right_flank>AAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAGGAATTTAGAATCCTAAAATTCCAAAATCCCAGATCCTCAAAACTTAAAAATCCCAAAATCACAAAATCTCTAAATCTCCGAATTTTAATTTTCTGAAAAAATTTGAATTCCCGCCAAACCAAAATAAAGAAGTATTGCGAATTCTGACTCCAAAGACAAACTATAAGAAAATCTCCAAACTTGGAATTTTCAGTTCCCTCAGAATTCTTAAATTCCTTATTTTCAGAACAAATGTTACTTTTTTTCCCCAAAATTCTCCTGAAATCCGTTGAGTAAATATGAATTCATTTCTGATTTTCCATCAGATTTATTTGAGAGTTCATCCGTTTGGATTTTTCCTAAATTGTCGTTTGAAAGAAGAAGACTAAGAATACATTTTGAATAGTGCCAATCAGAGATCTCTTGTTTTCTCTGGCTTCTTCTTCGTCTTCTTCTTCTTCTTAACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACA</canonical>
            <polymorphic>CTCAGGAATTTAGAATCCTAAAATTCCAAAATCCCAGATCCTCAAAACTTAAAAATCCCAAAATCACAAAATCTCTAAATCTCCGAATTTTAATTTTCTGAAAAAATTTGAATTCCCGCCAAACCAAAATAAAGAAGTATTGCGAATTCTGACTCCAAAGACAAACTATAAGAAAATCTCCAAACTTGGAATTTTCAGTTCCCTCAGAATTCTTAAATTCCTTATTTTCAGAACAAATGTTACTTTTTTTCCCCAAAATTCTCCTGAAATCCGTTGAGTAAATATGAATTCATTTCTGATTTTCCATCAGATTTATTTGAGAGTTCATCCGTTTGGATTTTTCCTAAATTGTCGTTTGAAAGAAGAAGACTAAGAATACATTTTGAATAGTGCCAATCAGAGATCTCTTGTTTTCTCTGGCTTCTTCTTCGTCTTCTTCTTCTTCTTAACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAKAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAACAACAAAAAGGGAAAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGTTTTGAACATTTCCTA</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>AACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTT</canonical_amplicon>
		<polymorphic_amplicon>AACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAKAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1523</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>260562</contig_pos>
        <strand>+</strand>
        <context>AAATAAATGA[A/G]AATTAACGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGA</left_flank>
        <right_flank>AATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCCCAGATCCTCAAAACTTAAAAATCCCAAAATCACAAAATCTCTAAATCTCCGAATTTTAATTTTCTGAAAAAATTTGAATTCCCGCCAAACCAAAATAAAGAAGTATTGCGAATTCTGACTCCAAAGACAAACTATAAGAAAATCTCCAAACTTGGAATTTTCAGTTCCCTCAGAATTCTTAAATTCCTTATTTTCAGAACAAATGTTACTTTTTTTCCCCAAAATTCTCCTGAAATCCGTTGAGTAAATATGAATTCATTTCTGATTTTCCATCAGATTTATTTGAGAGTTCATCCGTTTGGATTTTTCCTAAATTGTCGTTTGAAAGAAGAAGACTAAGAATACATTTTGAATAGTGCCAATCAGAGATCTCTTGTTTTCTCTGGCTTCTTCTTCGTCTTCTTCTTCTTCTTAACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGAGACATATGTTTTTA</canonical>
            <polymorphic>AAATCCCAGATCCTCAAAACTTAAAAATCCCAAAATCACAAAATCTCTAAATCTCCGAATTTTAATTTTCTGAAAAAATTTGAATTCCCGCCAAACCAAAATAAAGAAGTATTGCGAATTCTGACTCCAAAGACAAACTATAAGAAAATCTCCAAACTTGGAATTTTCAGTTCCCTCAGAATTCTTAAATTCCTTATTTTCAGAACAAATGTTACTTTTTTTCCCCAAAATTCTCCTGAAATCCGTTGAGTAAATATGAATTCATTTCTGATTTTCCATCAGATTTATTTGAGAGTTCATCCGTTTGGATTTTTCCTAAATTGTCGTTTGAAAGAAGAAGACTAAGAATACATTTTGAATAGTGCCAATCAGAGATCTCTTGTTTTCTCTGGCTTCTTCTTCGTCTTCTTCTTCTTCTTAACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGARAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGAGACATATGTTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGGGAAAGGAGAAGATTT</pcr_primer_p1>
		<pcr_primer_p2>CCCCTTTAAAAATGGTAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGG</canonical_amplicon>
		<polymorphic_amplicon>AAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGARAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1524</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>260590</contig_pos>
        <strand>+</strand>
        <context>GATTCSAAAA[A/G]TTCCAAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAA</left_flank>
        <right_flank>TTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCAAAATCACAAAATCTCTAAATCTCCGAATTTTAATTTTCTGAAAAAATTTGAATTCCCGCCAAACCAAAATAAAGAAGTATTGCGAATTCTGACTCCAAAGACAAACTATAAGAAAATCTCCAAACTTGGAATTTTCAGTTCCCTCAGAATTCTTAAATTCCTTATTTTCAGAACAAATGTTACTTTTTTTCCCCAAAATTCTCCTGAAATCCGTTGAGTAAATATGAATTCATTTCTGATTTTCCATCAGATTTATTTGAGAGTTCATCCGTTTGGATTTTTCCTAAATTGTCGTTTGAAAGAAGAAGACTAAGAATACATTTTGAATAGTGCCAATCAGAGATCTCTTGTTTTCTCTGGCTTCTTCTTCGTCTTCTTCTTCTTCTTAACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGAGACATATGTTTTTAGAATTCGAGAGTTATCATATTTGATAAA</canonical>
            <polymorphic>CCCAAAATCACAAAATCTCTAAATCTCCGAATTTTAATTTTCTGAAAAAATTTGAATTCCCGCCAAACCAAAATAAAGAAGTATTGCGAATTCTGACTCCAAAGACAAACTATAAGAAAATCTCCAAACTTGGAATTTTCAGTTCCCTCAGAATTCTTAAATTCCTTATTTTCAGAACAAATGTTACTTTTTTTCCCCAAAATTCTCCTGAAATCCGTTGAGTAAATATGAATTCATTTCTGATTTTCCATCAGATTTATTTGAGAGTTCATCCGTTTGGATTTTTCCTAAATTGTCGTTTGAAAGAAGAAGACTAAGAATACATTTTGAATAGTGCCAATCAGAGATCTCTTGTTTTCTCTGGCTTCTTCTTCGTCTTCTTCTTCTTCTTAACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAARTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGAGACATATGTTTTTAGAATTCGAGAGTTATCATATTTGATAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGGGAAAGGAGAAGATTT</pcr_primer_p1>
		<pcr_primer_p2>CCCCTTTAAAAATGGTAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGG</canonical_amplicon>
		<polymorphic_amplicon>AAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAARTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1525</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>260608</contig_pos>
        <strand></strand>
        <context>AAAAAATTGA[A/G]TTCSAATTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGA</left_flank>
        <right_flank>TTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAAATCTCCGAATTTTAATTTTCTGAAAAAATTTGAATTCCCGCCAAACCAAAATAAAGAAGTATTGCGAATTCTGACTCCAAAGACAAACTATAAGAAAATCTCCAAACTTGGAATTTTCAGTTCCCTCAGAATTCTTAAATTCCTTATTTTCAGAACAAATGTTACTTTTTTTCCCCAAAATTCTCCTGAAATCCGTTGAGTAAATATGAATTCATTTCTGATTTTCCATCAGATTTATTTGAGAGTTCATCCGTTTGGATTTTTCCTAAATTGTCGTTTGAAAGAAGAAGACTAAGAATACATTTTGAATAGTGCCAATCAGAGATCTCTTGTTTTCTCTGGCTTCTTCTTCGTCTTCTTCTTCTTCTTAACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGAGACATATGTTTTTAGAATTCGAGAGTTATCATATTTGATAAATGGTCAGTTTTGAGAAGG</canonical>
            <polymorphic>CTAAATCTCCGAATTTTAATTTTCTGAAAAAATTTGAATTCCCGCCAAACCAAAATAAAGAAGTATTGCGAATTCTGACTCCAAAGACAAACTATAAGAAAATCTCCAAACTTGGAATTTTCAGTTCCCTCAGAATTCTTAAATTCCTTATTTTCAGAACAAATGTTACTTTTTTTCCCCAAAATTCTCCTGAAATCCGTTGAGTAAATATGAATTCATTTCTGATTTTCCATCAGATTTATTTGAGAGTTCATCCGTTTGGATTTTTCCTAAATTGTCGTTTGAAAGAAGAAGACTAAGAATACATTTTGAATAGTGCCAATCAGAGATCTCTTGTTTTCTCTGGCTTCTTCTTCGTCTTCTTCTTCTTCTTAACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGARTTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGAGACATATGTTTTTAGAATTCGAGAGTTATCATATTTGATAAATGGTCAGTTTTGAGAAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>266 217 191 69 45 45 41 34 30 19 18 11 8 6</canonical_bands>
                <polymorphic_bands>266 260 217 45 45 41 34 30 19 18 11 8 6</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>457 286 79 63 45 36 34</canonical_bands>
                <polymorphic_bands>743 79 63 45 36 34</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>183 157 130 69 60 45 45 41 39 36 34 30 25 19 18 14 13 11 8 6 6 6 5</canonical_bands>
                <polymorphic_bands>183 157 130 69 60 45 45 41 39 36 34 30 25 19 18 14 13 11 11 8 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGGGAAAGGAGAAGATTT</pcr_primer_p1>
		<pcr_primer_p2>CCCCTTTAAAAATGGTAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGG</canonical_amplicon>
		<polymorphic_amplicon>AAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGARTTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1526</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>260612</contig_pos>
        <strand></strand>
        <context>AATTGARTTC[C/G]AATTCTTGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTC</left_flank>
        <right_flank>AATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTCCGAATTTTAATTTTCTGAAAAAATTTGAATTCCCGCCAAACCAAAATAAAGAAGTATTGCGAATTCTGACTCCAAAGACAAACTATAAGAAAATCTCCAAACTTGGAATTTTCAGTTCCCTCAGAATTCTTAAATTCCTTATTTTCAGAACAAATGTTACTTTTTTTCCCCAAAATTCTCCTGAAATCCGTTGAGTAAATATGAATTCATTTCTGATTTTCCATCAGATTTATTTGAGAGTTCATCCGTTTGGATTTTTCCTAAATTGTCGTTTGAAAGAAGAAGACTAAGAATACATTTTGAATAGTGCCAATCAGAGATCTCTTGTTTTCTCTGGCTTCTTCTTCGTCTTCTTCTTCTTCTTAACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGAGACATATGTTTTTAGAATTCGAGAGTTATCATATTTGATAAATGGTCAGTTTTGAGAAGGGTCA</canonical>
            <polymorphic>ATCTCCGAATTTTAATTTTCTGAAAAAATTTGAATTCCCGCCAAACCAAAATAAAGAAGTATTGCGAATTCTGACTCCAAAGACAAACTATAAGAAAATCTCCAAACTTGGAATTTTCAGTTCCCTCAGAATTCTTAAATTCCTTATTTTCAGAACAAATGTTACTTTTTTTCCCCAAAATTCTCCTGAAATCCGTTGAGTAAATATGAATTCATTTCTGATTTTCCATCAGATTTATTTGAGAGTTCATCCGTTTGGATTTTTCCTAAATTGTCGTTTGAAAGAAGAAGACTAAGAATACATTTTGAATAGTGCCAATCAGAGATCTCTTGTTTTCTCTGGCTTCTTCTTCGTCTTCTTCTTCTTCTTAACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCSAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGAGACATATGTTTTTAGAATTCGAGAGTTATCATATTTGATAAATGGTCAGTTTTGAGAAGGGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGGGAAAGGAGAAGATTT</pcr_primer_p1>
		<pcr_primer_p2>CCCCTTTAAAAATGGTAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGG</canonical_amplicon>
		<polymorphic_amplicon>AAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCSAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1527</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>260648</contig_pos>
        <strand>+</strand>
        <context>GAACATTTAA[C/G]AATTAAAGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAA</left_flank>
        <right_flank>AATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCGCCAAACCAAAATAAAGAAGTATTGCGAATTCTGACTCCAAAGACAAACTATAAGAAAATCTCCAAACTTGGAATTTTCAGTTCCCTCAGAATTCTTAAATTCCTTATTTTCAGAACAAATGTTACTTTTTTTCCCCAAAATTCTCCTGAAATCCGTTGAGTAAATATGAATTCATTTCTGATTTTCCATCAGATTTATTTGAGAGTTCATCCGTTTGGATTTTTCCTAAATTGTCGTTTGAAAGAAGAAGACTAAGAATACATTTTGAATAGTGCCAATCAGAGATCTCTTGTTTTCTCTGGCTTCTTCTTCGTCTTCTTCTTCTTCTTAACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGAGACATATGTTTTTAGAATTCGAGAGTTATCATATTTGATAAATGGTCAGTTTTGAGAAGGGTCACTTCGGACGTATTGGTTGTGAAATCATATTTAATTT</canonical>
            <polymorphic>CCCGCCAAACCAAAATAAAGAAGTATTGCGAATTCTGACTCCAAAGACAAACTATAAGAAAATCTCCAAACTTGGAATTTTCAGTTCCCTCAGAATTCTTAAATTCCTTATTTTCAGAACAAATGTTACTTTTTTTCCCCAAAATTCTCCTGAAATCCGTTGAGTAAATATGAATTCATTTCTGATTTTCCATCAGATTTATTTGAGAGTTCATCCGTTTGGATTTTTCCTAAATTGTCGTTTGAAAGAAGAAGACTAAGAATACATTTTGAATAGTGCCAATCAGAGATCTCTTGTTTTCTCTGGCTTCTTCTTCGTCTTCTTCTTCTTCTTAACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAASAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGAGACATATGTTTTTAGAATTCGAGAGTTATCATATTTGATAAATGGTCAGTTTTGAGAAGGGTCACTTCGGACGTATTGGTTGTGAAATCATATTTAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGGGAAAGGAGAAGATTT</pcr_primer_p1>
		<pcr_primer_p2>CCCCTTTAAAAATGGTAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGG</canonical_amplicon>
		<polymorphic_amplicon>AAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAASAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1528</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>260667</contig_pos>
        <strand>+</strand>
        <context>TAAGCCTAAA[A/T]TACGGGGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAA</left_flank>
        <right_flank>TACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGTATTGCGAATTCTGACTCCAAAGACAAACTATAAGAAAATCTCCAAACTTGGAATTTTCAGTTCCCTCAGAATTCTTAAATTCCTTATTTTCAGAACAAATGTTACTTTTTTTCCCCAAAATTCTCCTGAAATCCGTTGAGTAAATATGAATTCATTTCTGATTTTCCATCAGATTTATTTGAGAGTTCATCCGTTTGGATTTTTCCTAAATTGTCGTTTGAAAGAAGAAGACTAAGAATACATTTTGAATAGTGCCAATCAGAGATCTCTTGTTTTCTCTGGCTTCTTCTTCGTCTTCTTCTTCTTCTTAACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGAGACATATGTTTTTAGAATTCGAGAGTTATCATATTTGATAAATGGTCAGTTTTGAGAAGGGTCACTTCGGACGTATTGGTTGTGAAATCATATTTAATTTTCAAACTTTTCAAAAATGT</canonical>
            <polymorphic>GAAGTATTGCGAATTCTGACTCCAAAGACAAACTATAAGAAAATCTCCAAACTTGGAATTTTCAGTTCCCTCAGAATTCTTAAATTCCTTATTTTCAGAACAAATGTTACTTTTTTTCCCCAAAATTCTCCTGAAATCCGTTGAGTAAATATGAATTCATTTCTGATTTTCCATCAGATTTATTTGAGAGTTCATCCGTTTGGATTTTTCCTAAATTGTCGTTTGAAAGAAGAAGACTAAGAATACATTTTGAATAGTGCCAATCAGAGATCTCTTGTTTTCTCTGGCTTCTTCTTCGTCTTCTTCTTCTTCTTAACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAWTACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGAGACATATGTTTTTAGAATTCGAGAGTTATCATATTTGATAAATGGTCAGTTTTGAGAAGGGTCACTTCGGACGTATTGGTTGTGAAATCATATTTAATTTTCAAACTTTTCAAAAATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGGGAAAGGAGAAGATTT</pcr_primer_p1>
		<pcr_primer_p2>CCCCTTTAAAAATGGTAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGG</canonical_amplicon>
		<polymorphic_amplicon>AAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAWTACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1529</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>260721</contig_pos>
        <strand>+</strand>
        <context>CTTTTCAAAC[A/C]TATTTTTACC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAAC</left_flank>
        <right_flank>TATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAATTTTCAGTTCCCTCAGAATTCTTAAATTCCTTATTTTCAGAACAAATGTTACTTTTTTTCCCCAAAATTCTCCTGAAATCCGTTGAGTAAATATGAATTCATTTCTGATTTTCCATCAGATTTATTTGAGAGTTCATCCGTTTGGATTTTTCCTAAATTGTCGTTTGAAAGAAGAAGACTAAGAATACATTTTGAATAGTGCCAATCAGAGATCTCTTGTTTTCTCTGGCTTCTTCTTCGTCTTCTTCTTCTTCTTAACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGAGACATATGTTTTTAGAATTCGAGAGTTATCATATTTGATAAATGGTCAGTTTTGAGAAGGGTCACTTCGGACGTATTGGTTGTGAAATCATATTTAATTTTCAAACTTTTCAAAAATGTGTGGACAAACTGACCGAGAAAGAGACGCAACTTCATAAAGAAGGAATACAATTT</canonical>
            <polymorphic>GGAATTTTCAGTTCCCTCAGAATTCTTAAATTCCTTATTTTCAGAACAAATGTTACTTTTTTTCCCCAAAATTCTCCTGAAATCCGTTGAGTAAATATGAATTCATTTCTGATTTTCCATCAGATTTATTTGAGAGTTCATCCGTTTGGATTTTTCCTAAATTGTCGTTTGAAAGAAGAAGACTAAGAATACATTTTGAATAGTGCCAATCAGAGATCTCTTGTTTTCTCTGGCTTCTTCTTCGTCTTCTTCTTCTTCTTAACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACMTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGAGACATATGTTTTTAGAATTCGAGAGTTATCATATTTGATAAATGGTCAGTTTTGAGAAGGGTCACTTCGGACGTATTGGTTGTGAAATCATATTTAATTTTCAAACTTTTCAAAAATGTGTGGACAAACTGACCGAGAAAGAGACGCAACTTCATAAAGAAGGAATACAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGCTCTATTGGAACATTTA</pcr_primer_p1>
		<pcr_primer_p2>GACACTAATGGGTGTAAGATGAG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTC</canonical_amplicon>
		<polymorphic_amplicon>CGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACMTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1530</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>260785</contig_pos>
        <strand>+</strand>
        <context>GCTAAATTGA[A/C]ACCTACTTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGA</left_flank>
        <right_flank>ACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAA</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCAAAATTCTCCTGAAATCCGTTGAGTAAATATGAATTCATTTCTGATTTTCCATCAGATTTATTTGAGAGTTCATCCGTTTGGATTTTTCCTAAATTGTCGTTTGAAAGAAGAAGACTAAGAATACATTTTGAATAGTGCCAATCAGAGATCTCTTGTTTTCTCTGGCTTCTTCTTCGTCTTCTTCTTCTTCTTAACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGAGACATATGTTTTTAGAATTCGAGAGTTATCATATTTGATAAATGGTCAGTTTTGAGAAGGGTCACTTCGGACGTATTGGTTGTGAAATCATATTTAATTTTCAAACTTTTCAAAAATGTGTGGACAAACTGACCGAGAAAGAGACGCAACTTCATAAAGAAGGAATACAATTTTTAAAATGAATAAGGAATACAGTGCGGTCAATATCTATACGACCCCCACCCCCTACATTTTGGG</canonical>
            <polymorphic>CCCAAAATTCTCCTGAAATCCGTTGAGTAAATATGAATTCATTTCTGATTTTCCATCAGATTTATTTGAGAGTTCATCCGTTTGGATTTTTCCTAAATTGTCGTTTGAAAGAAGAAGACTAAGAATACATTTTGAATAGTGCCAATCAGAGATCTCTTGTTTTCTCTGGCTTCTTCTTCGTCTTCTTCTTCTTCTTAACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAMACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGAGACATATGTTTTTAGAATTCGAGAGTTATCATATTTGATAAATGGTCAGTTTTGAGAAGGGTCACTTCGGACGTATTGGTTGTGAAATCATATTTAATTTTCAAACTTTTCAAAAATGTGTGGACAAACTGACCGAGAAAGAGACGCAACTTCATAAAGAAGGAATACAATTTTTAAAATGAATAAGGAATACAGTGCGGTCAATATCTATACGACCCCCACCCCCTACATTTTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACCATTTTTAAAGGGGTTTTA</pcr_primer_p1>
		<pcr_primer_p2>CGGAGTGTATGTCTTCTTCTATT</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCG</canonical_amplicon>
		<polymorphic_amplicon>TTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAMACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1531</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>260817</contig_pos>
        <strand>+</strand>
        <context>GATCGAATTA[A/G]CGAGACCAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTA</left_flank>
        <right_flank>CGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTAC</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAATTCATTTCTGATTTTCCATCAGATTTATTTGAGAGTTCATCCGTTTGGATTTTTCCTAAATTGTCGTTTGAAAGAAGAAGACTAAGAATACATTTTGAATAGTGCCAATCAGAGATCTCTTGTTTTCTCTGGCTTCTTCTTCGTCTTCTTCTTCTTCTTAACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGAGACATATGTTTTTAGAATTCGAGAGTTATCATATTTGATAAATGGTCAGTTTTGAGAAGGGTCACTTCGGACGTATTGGTTGTGAAATCATATTTAATTTTCAAACTTTTCAAAAATGTGTGGACAAACTGACCGAGAAAGAGACGCAACTTCATAAAGAAGGAATACAATTTTTAAAATGAATAAGGAATACAGTGCGGTCAATATCTATACGACCCCCACCCCCTACATTTTGGGCGCACAGGAAAAGCTGGGAGAGATATCAAAAA</canonical>
            <polymorphic>ATGAATTCATTTCTGATTTTCCATCAGATTTATTTGAGAGTTCATCCGTTTGGATTTTTCCTAAATTGTCGTTTGAAAGAAGAAGACTAAGAATACATTTTGAATAGTGCCAATCAGAGATCTCTTGTTTTCTCTGGCTTCTTCTTCGTCTTCTTCTTCTTCTTAACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTARCGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGAGACATATGTTTTTAGAATTCGAGAGTTATCATATTTGATAAATGGTCAGTTTTGAGAAGGGTCACTTCGGACGTATTGGTTGTGAAATCATATTTAATTTTCAAACTTTTCAAAAATGTGTGGACAAACTGACCGAGAAAGAGACGCAACTTCATAAAGAAGGAATACAATTTTTAAAATGAATAAGGAATACAGTGCGGTCAATATCTATACGACCCCCACCCCCTACATTTTGGGCGCACAGGAAAAGCTGGGAGAGATATCAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>328 163 95 85 85 80 79 46 21 11 7</canonical_bands>
                <polymorphic_bands>349 163 95 85 85 80 79 46 11 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACCATTTTTAAAGGGGTTTTA</pcr_primer_p1>
		<pcr_primer_p2>CGGAGTGTATGTCTTCTTCTATT</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCG</canonical_amplicon>
		<polymorphic_amplicon>TTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTARCGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1532</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>260761</contig_pos>
        <strand>+</strand>
        <context>GATAAAAAAT[C/T]CAACTAGAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAAT</left_flank>
        <right_flank>CAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGAACAAATGTTACTTTTTTTCCCCAAAATTCTCCTGAAATCCGTTGAGTAAATATGAATTCATTTCTGATTTTCCATCAGATTTATTTGAGAGTTCATCCGTTTGGATTTTTCCTAAATTGTCGTTTGAAAGAAGAAGACTAAGAATACATTTTGAATAGTGCCAATCAGAGATCTCTTGTTTTCTCTGGCTTCTTCTTCGTCTTCTTCTTCTTCTTAACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGAGACATATGTTTTTAGAATTCGAGAGTTATCATATTTGATAAATGGTCAGTTTTGAGAAGGGTCACTTCGGACGTATTGGTTGTGAAATCATATTTAATTTTCAAACTTTTCAAAAATGTGTGGACAAACTGACCGAGAAAGAGACGCAACTTCATAAAGAAGGAATACAATTTTTAAAATGAATAAGGAATACAGTGCGGTCAATATCTATAC</canonical>
            <polymorphic>TCAGAACAAATGTTACTTTTTTTCCCCAAAATTCTCCTGAAATCCGTTGAGTAAATATGAATTCATTTCTGATTTTCCATCAGATTTATTTGAGAGTTCATCCGTTTGGATTTTTCCTAAATTGTCGTTTGAAAGAAGAAGACTAAGAATACATTTTGAATAGTGCCAATCAGAGATCTCTTGTTTTCTCTGGCTTCTTCTTCGTCTTCTTCTTCTTCTTAACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATYCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGAGACATATGTTTTTAGAATTCGAGAGTTATCATATTTGATAAATGGTCAGTTTTGAGAAGGGTCACTTCGGACGTATTGGTTGTGAAATCATATTTAATTTTCAAACTTTTCAAAAATGTGTGGACAAACTGACCGAGAAAGAGACGCAACTTCATAAAGAAGGAATACAATTTTTAAAATGAATAAGGAATACAGTGCGGTCAATATCTATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGCTCTATTGGAACATTTA</pcr_primer_p1>
		<pcr_primer_p2>GACACTAATGGGTGTAAGATGAG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTC</canonical_amplicon>
		<polymorphic_amplicon>CGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATYCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1535</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>260897</contig_pos>
        <strand>+</strand>
        <context>AAAGCAGGCA[A/G]ACGGGGAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCA</left_flank>
        <right_flank>ACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAGACTAAGAATACATTTTGAATAGTGCCAATCAGAGATCTCTTGTTTTCTCTGGCTTCTTCTTCGTCTTCTTCTTCTTCTTAACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGAGACATATGTTTTTAGAATTCGAGAGTTATCATATTTGATAAATGGTCAGTTTTGAGAAGGGTCACTTCGGACGTATTGGTTGTGAAATCATATTTAATTTTCAAACTTTTCAAAAATGTGTGGACAAACTGACCGAGAAAGAGACGCAACTTCATAAAGAAGGAATACAATTTTTAAAATGAATAAGGAATACAGTGCGGTCAATATCTATACGACCCCCACCCCCTACATTTTGGGCGCACAGGAAAAGCTGGGAGAGATATCAAAAAACGGTTAACGCCATTCGATTCACAATAAAAAATAACCTCTAGAGACGAAGTTTCATAATTTTAGCACTTTCCCTGAACAC</canonical>
            <polymorphic>AGAAGACTAAGAATACATTTTGAATAGTGCCAATCAGAGATCTCTTGTTTTCTCTGGCTTCTTCTTCGTCTTCTTCTTCTTCTTAACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCARACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGAGACATATGTTTTTAGAATTCGAGAGTTATCATATTTGATAAATGGTCAGTTTTGAGAAGGGTCACTTCGGACGTATTGGTTGTGAAATCATATTTAATTTTCAAACTTTTCAAAAATGTGTGGACAAACTGACCGAGAAAGAGACGCAACTTCATAAAGAAGGAATACAATTTTTAAAATGAATAAGGAATACAGTGCGGTCAATATCTATACGACCCCCACCCCCTACATTTTGGGCGCACAGGAAAAGCTGGGAGAGATATCAAAAAACGGTTAACGCCATTCGATTCACAATAAAAAATAACCTCTAGAGACGAAGTTTCATAATTTTAGCACTTTCCCTGAACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACCATTTTTAAAGGGGTTTTA</pcr_primer_p1>
		<pcr_primer_p2>CGGAGTGTATGTCTTCTTCTATT</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCG</canonical_amplicon>
		<polymorphic_amplicon>TTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCARACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1536</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>264620</contig_pos>
        <strand></strand>
        <context>catattgcag[T/A]attcatcgag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATTTTGTTCATAGATAGATTACATTTACCTAAATAGTATCATATTGCAG</left_flank>
        <right_flank>ATTCATCGAGTGCTATCATATAAAATCGGTCCAAATTTTGATCTTTAAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGCTAACGGGGCTCCCGCGTAGAAGCAGGAGCCTCGTTGCCAACCCTAGACTGAAAAGATGTTACAACGACGAGATGGCGATCGGGGTGAAGATAGCACTTTGAACCTAATTATCTCAGTCCCTGTAAAAGATATTAAAATTTTGCCAACTGATGAAATGGTTCTGATATCAAGACAAACATTTTCGTCTTTGAAATTTTTGAATATCTTTTACAGGAACCGAGATATATTTGGTCAGAGTTGCAAAATGATAATTTTCATTTGTTGTCGGTTTACGCCTCTCCGGGGCTGAACCTTCTGGGCTCCGTTTATAGTACCCATAATCTCTCAAAAAGGTTTTGTAACTACTTGTTCAAGAAATGGAATACTTTGGAAATAAGGATATTTTTAATAATTTTTGTTTTCTTTCGAATTAGGTGACCTGTTTGTTTCAGTTTGTTTCGTCTGTAATTTTGTTCATAGATAGATTACATTTACCTAAATAGTATCATATTGCAGTATTCATCGAGTGCTATCATATAAAATCGGTCCAAATTTTGATCTTTAAAAGTAGGTGTAGATCAAGAATCCCCCGCGATCCATCATTTCAAAGTGTTCATATTTTTTTTTCTTCCGCTCTTTCAAACTTTCAAACTAAATTGCTCTTGAAATCATACATTCCCCTTCGTAAAAGCCTGAAAATGTGAACAAAGAATTAGTTATTAAATTTTTATGTATTAAAAAAAGGATTCGAATCGGGGGGAGGTTTGTGTTGTTTGGGGGTCACGAGACCGGTCAAAGTTGGGTTGTAAGCAAAAAGAGAGGATGTACAAAAGAGAAGCAGGAGCAACCGATGATTTTCTCACTGGGGGACACACAAGAAGATGGTGGAGCGAAACAAAAAACACATGAAAACTGATTTGGAGGATTTTCTCTCGGTAAAGAAAATGGTTTTTAAAGTTTTTGAAAAAAAATGAAAAAAAGAAGAAAAAGAAGAGAAAAAGAACCGGAAAATGAGAT</canonical>
            <polymorphic>CCGCTAACGGGGCTCCCGCGTAGAAGCAGGAGCCTCGTTGCCAACCCTAGACTGAAAAGATGTTACAACGACGAGATGGCGATCGGGGTGAAGATAGCACTTTGAACCTAATTATCTCAGTCCCTGTAAAAGATATTAAAATTTTGCCAACTGATGAAATGGTTCTGATATCAAGACAAACATTTTCGTCTTTGAAATTTTTGAATATCTTTTACAGGAACCGAGATATATTTGGTCAGAGTTGCAAAATGATAATTTTCATTTGTTGTCGGTTTACGCCTCTCCGGGGCTGAACCTTCTGGGCTCCGTTTATAGTACCCATAATCTCTCAAAAAGGTTTTGTAACTACTTGTTCAAGAAATGGAATACTTTGGAAATAAGGATATTTTTAATAATTTTTGTTTTCTTTCGAATTAGGTGACCTGTTTGTTTCAGTTTGTTTCGTCTGTAATTTTGTTCATAGATAGATTACATTTACCTAAATAGTATCATATTGCAGWATTCATCGAGTGCTATCATATAAAATCGGTCCAAATTTTGATCTTTAAAAGTAGGTGTAGATCAAGAATCCCCCGCGATCCATCATTTCAAAGTGTTCATATTTTTTTTTCTTCCGCTCTTTCAAACTTTCAAACTAAATTGCTCTTGAAATCATACATTCCCCTTCGTAAAAGCCTGAAAATGTGAACAAAGAATTAGTTATTAAATTTTTATGTATTAAAAAAAGGATTCGAATCGGGGGGAGGTTTGTGTTGTTTGGGGGTCACGAGACCGGTCAAAGTTGGGTTGTAAGCAAAAAGAGAGGATGTACAAAAGAGAAGCAGGAGCAACCGATGATTTTCTCACTGGGGGACACACAAGAAGATGGTGGAGCGAAACAAAAAACACATGAAAACTGATTTGGAGGATTTTCTCTCGGTAAAGAAAATGGTTTTTAAAGTTTTTGAAAAAAAATGAAAAAAAGAAGAAAAAGAAGAGAAAAAGAACCGGAAAATGAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAATGGAATACTTTGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATATGAACACTTTGAAATGATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGAAATGGAATACTTTGGAAATAAGGATATTTTTAATAATTTTTGTTTTCTTTCGAATTAGGTGACCTGTTTGTTTCAGTTTGTTTCGTCTGTAATTTTGTTCATAGATAGATTACATTTACCTAAATAGTATCATATTGCAGTATTCATCGAGTGCTATCATATAAAATCGGTCCAAATTTTGATCTTTAAAAGTAGGTGTAGATCAAGAATCCCCCGCGATCCATCATTTCAAAGTGTTCATATTT</canonical_amplicon>
		<polymorphic_amplicon>AAGAAATGGAATACTTTGGAAATAAGGATATTTTTAATAATTTTTGTTTTCTTTCGAATTAGGTGACCTGTTTGTTTCAGTTTGTTTCGTCTGTAATTTTGTTCATAGATAGATTACATTTACCTAAATAGTATCATATTGCAGWATTCATCGAGTGCTATCATATAAAATCGGTCCAAATTTTGATCTTTAAAAGTAGGTGTAGATCAAGAATCCCCCGCGATCCATCATTTCAAAGTGTTCATATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1538</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>42817</contig_pos>
        <strand>+</strand>
        <context>CGAATTGTGG[C/G]TTTATCGGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGATTTCATGGTTTCGTGGCCTTGTTTTTATGACATCCGTCGAATTGTGG</left_flank>
        <right_flank>TTTATCGGTTGACCAATTGGCCTGCGGGCCTACTTCAGCATAATGAACCA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGTTCCTTTTCATCTTGGCGTAGTCGCCTTCTTTCAAAACAAAACCGATCGGCTAAAAACGATCGTTACTATTGACTTGATAGGTGGTGACACTTGGGTTCAAGCGAGGGGGTCAGAAAGCGCGTCCCAGTAAATTTTTCAAAAATTCTCAATTCGCTGCCGAACTTCGTTGGTTGAGTATCGCAGTTTTAAACGATGAGCGAGAATATGCGCGTTGAAACCCGTTGATTTTTAAGAAATAGATCATGATCTAGTTCAAACCCGCGTTCATTTCAAAATTATTAAATTTCTTCTGGCTTACGAGTTTGCTGGGGCGCTTTTTCTGACCCCCTCGCTTGAAGTGTGGTGAAGCAATATTTTTGTGAATGAAAATCCCTGTAATTCTTTTTGAATAATTTCCGACTTTTGTATAATTCGGGCAGATGGGACTCAGAAAGGCAGATGTTTCGATTTCATGGTTTCGTGGCCTTGTTTTTATGACATCCGTCGAATTGTGGCTTTATCGGTTGACCAATTGGCCTGCGGGCCTACTTCAGCATAATGAACCATTTTTATTCAATACGAGGTTAATAACCGTTGCGACCTTATCGCTTTCCATTTATACTGTGTTCAAAGTAGACTTTGTAGAACACCAGTGAATTTTTGCGTTGTTCAAAACCGTAAAATTTCGTTAAAGGCGCATGGTCCTTCAGTGCAGTTGAAATTAAAGGGTTGCGCCTTTAAGAAATTGTACGGTCGGGCTAGCAACAACGAAGAAAACTTTTTTGAGACGCTTCTCTTTGTATCATTTGCTTTAGCCATTACACGCTCTCCCACAGAACAATTCCGAACTGCAAAAAATTTTTGATCTACAGAAAAAAAGTTTAGCGCGATCACAATTGCAGGTCTAAAACCATAAGTTCAGAATTTTTTATCTGATTTTGTGGAGTTCCAAGATGATTCAAATGATTCTTAAAAAATTAATTAGTGATTATAGATTCATGTATGGTCGTTTTCCG</canonical>
            <polymorphic>TCAGTTCCTTTTCATCTTGGCGTAGTCGCCTTCTTTCAAAACAAAACCGATCGGCTAAAAACGATCGTTACTATTGACTTGATAGGTGGTGACACTTGGGTTCAAGCGAGGGGGTCAGAAAGCGCGTCCCAGTAAATTTTTCAAAAATTCTCAATTCGCTGCCGAACTTCGTTGGTTGAGTATCGCAGTTTTAAACGATGAGCGAGAATATGCGCGTTGAAACCCGTTGATTTTTAAGAAATAGATCATGATCTAGTTCAAACCCGCGTTCATTTCAAAATTATTAAATTTCTTCTGGCTTACGAGTTTGCTGGGGCGCTTTTTCTGACCCCCTCGCTTGAAGTGTGGTGAAGCAATATTTTTGTGAATGAAAATCCCTGTAATTCTTTTTGAATAATTTCCGACTTTTGTATAATTCGGGCAGATGGGACTCAGAAAGGCAGATGTTTCGATTTCATGGTTTCGTGGCCTTGTTTTTATGACATCCGTCGAATTGTGGSTTTATCGGTTGACCAATTGGCCTGCGGGCCTACTTCAGCATAATGAACCATTTTTATTCAATACGAGGTTAATAACCGTTGCGACCTTATCGCTTTCCATTTATACTGTGTTCAAAGTAGACTTTGTAGAACACCAGTGAATTTTTGCGTTGTTCAAAACCGTAAAATTTCGTTAAAGGCGCATGGTCCTTCAGTGCAGTTGAAATTAAAGGGTTGCGCCTTTAAGAAATTGTACGGTCGGGCTAGCAACAACGAAGAAAACTTTTTTGAGACGCTTCTCTTTGTATCATTTGCTTTAGCCATTACACGCTCTCCCACAGAACAATTCCGAACTGCAAAAAATTTTTGATCTACAGAAAAAAAGTTTAGCGCGATCACAATTGCAGGTCTAAAACCATAAGTTCAGAATTTTTTATCTGATTTTGTGGAGTTCCAAGATGATTCAAATGATTCTTAAAAAATTAATTAGTGATTATAGATTCATGTATGGTCGTTTTCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>244 214 201 170 57 54 31 21 8</canonical_bands>
                <polymorphic_bands>244 214 201 170 57 54 52 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAAAATCCCTGTAATTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAACACAGTATAAATGGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGAAAATCCCTGTAATTCTTTTTGAATAATTTCCGACTTTTGTATAATTCGGGCAGATGGGACTCAGAAAGGCAGATGTTTCGATTTCATGGTTTCGTGGCCTTGTTTTTATGACATCCGTCGAATTGTGGCTTTATCGGTTGACCAATTGGCCTGCGGGCCTACTTCAGCATAATGAACCATTTTTATTCAATACGAGGTTAATAACCGTTGCGACCTTATCGCTTTCCATTTATACTGTGTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>ATGAAAATCCCTGTAATTCTTTTTGAATAATTTCCGACTTTTGTATAATTCGGGCAGATGGGACTCAGAAAGGCAGATGTTTCGATTTCATGGTTTCGTGGCCTTGTTTTTATGACATCCGTCGAATTGTGGSTTTATCGGTTGACCAATTGGCCTGCGGGCCTACTTCAGCATAATGAACCATTTTTATTCAATACGAGGTTAATAACCGTTGCGACCTTATCGCTTTCCATTTATACTGTGTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1561</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>46859</contig_pos>
        <strand>+</strand>
        <context>ATATGTGGCT[G/T]ATAGCAAgcg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGAAGATGAGGGAGGATCCATTGAGAAATCAATTGCAAAATATGTGGCT</left_flank>
        <right_flank>ATAGCAAGCGTAAAGCGAGACTTACAAAACGACCTGAAAAAATTCGACTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCCTCCCTAATTCTTTATTTTTTGAGGAGGACACTAATCGACAGAAAACGACGGGTTCCTCCTGTATGTTTATGTATTTTTTTTTTGAATTTTACCCACTTTATGTTTTCATTCTTGAATGCCCCTTGAATTTTATCGTCTACTGGTTCCCTGTTCTACCCCTCTTCTTTTATTAGTTTCTGCTATCAATCTGCAATTCGATTAGACGGTTTTTTTGGAATACAAAGATAATTTATGCCTTTTATCTGTTTGATTTCAATACCATTCAGAAATGAGAAACTTGATAACGCCATCTGATGAATTAATTATCAGTATAGAATTCCTTGTTTTCGAAGAAAAAGAACCTTCATCAAAGCTTCAAAAAAATACAGATGGATGACGATGAACAGAAAGGATACACCTGGGAGGCTGGTTACGCTGAAGGCTTGAACATCAATGAAGTTCTTGTCGAAGATGAGGGAGGATCCATTGAGAAATCAATTGCAAAATATGTGGCTGATAGCAAGCGTAAAGCGAGACTTACAAAACGACCTGAAAAAATTCGACTGGGAATTGTAATTATAAAATTAAAATTTATGAAAAGCTGTATGGCTTTTTTCAGATGCGACATGTCATGATCGTCATCGATTGCTCAAGATTTATGACAAGCAAGGCAATGCCTCCTTCCAGATTTGTAGTTGTGATGAAGGTACGATTTCGAAATGAATTCTTTATCTGGATGGCTTCTGAATAGTCTTATTCTTCAGGCGTTGCAACAGTTCCTCGAACGATTTTTCGAACAAAATCCGATTGCTCAAATCGGTCTGATCACTTGCAAAGATCGAAAAGCTGATAGACTCACAATGATGACAGGAAATATCCGAATTTTGAAAGAATCCTTAAGTTCTTTGACAGAAGCATTCTGTGGTGGAGATTTTTCTTTACAAAACGCTCTCCAGCTTGCATGTGTCAATTTGAAGTGAGTGAAATGAATACAGATCATTGATCATCGTTTCAAC</canonical>
            <polymorphic>TATCCTCCCTAATTCTTTATTTTTTGAGGAGGACACTAATCGACAGAAAACGACGGGTTCCTCCTGTATGTTTATGTATTTTTTTTTTGAATTTTACCCACTTTATGTTTTCATTCTTGAATGCCCCTTGAATTTTATCGTCTACTGGTTCCCTGTTCTACCCCTCTTCTTTTATTAGTTTCTGCTATCAATCTGCAATTCGATTAGACGGTTTTTTTGGAATACAAAGATAATTTATGCCTTTTATCTGTTTGATTTCAATACCATTCAGAAATGAGAAACTTGATAACGCCATCTGATGAATTAATTATCAGTATAGAATTCCTTGTTTTCGAAGAAAAAGAACCTTCATCAAAGCTTCAAAAAAATACAGATGGATGACGATGAACAGAAAGGATACACCTGGGAGGCTGGTTACGCTGAAGGCTTGAACATCAATGAAGTTCTTGTCGAAGATGAGGGAGGATCCATTGAGAAATCAATTGCAAAATATGTGGCTKATAGCAAGCGTAAAGCGAGACTTACAAAACGACCTGAAAAAATTCGACTGGGAATTGTAATTATAAAATTAAAATTTATGAAAAGCTGTATGGCTTTTTTCAGATGCGACATGTCATGATCGTCATCGATTGCTCAAGATTTATGACAAGCAAGGCAATGCCTCCTTCCAGATTTGTAGTTGTGATGAAGGTACGATTTCGAAATGAATTCTTTATCTGGATGGCTTCTGAATAGTCTTATTCTTCAGGCGTTGCAACAGTTCCTCGAACGATTTTTCGAACAAAATCCGATTGCTCAAATCGGTCTGATCACTTGCAAAGATCGAAAAGCTGATAGACTCACAATGATGACAGGAAATATCCGAATTTTGAAAGAATCCTTAAGTTCTTTGACAGAAGCATTCTGTGGTGGAGATTTTTCTTTACAAAACGCTCTCCAGCTTGCATGTGTCAATTTGAAGTGAGTGAAATGAATACAGATCATTGATCATCGTTTCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATGAAGTTCTTGTCGAAGAT</pcr_primer_p1>
		<pcr_primer_p2>ACAACTACAAATCTGGAAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAATGAAGTTCTTGTCGAAGATGAGGGAGGATCCATTGAGAAATCAATTGCAAAATATGTGGCTGATAGCAAGCGTAAAGCGAGACTTACAAAACGACCTGAAAAAATTCGACTGGGAATTGTAATTATAAAATTAAAATTTATGAAAAGCTGTATGGCTTTTTTCAGATGCGACATGTCATGATCGTCATCGATTGCTCAAGATTTATGACAAGCAAGGCAATGCCTCCTTCCAGATTTGTAGTTGT</canonical_amplicon>
		<polymorphic_amplicon>CAATGAAGTTCTTGTCGAAGATGAGGGAGGATCCATTGAGAAATCAATTGCAAAATATGTGGCTKATAGCAAGCGTAAAGCGAGACTTACAAAACGACCTGAAAAAATTCGACTGGGAATTGTAATTATAAAATTAAAATTTATGAAAAGCTGTATGGCTTTTTTCAGATGCGACATGTCATGATCGTCATCGATTGCTCAAGATTTATGACAAGCAAGGCAATGCCTCCTTCCAGATTTGTAGTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1562</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>46692</contig_pos>
        <strand>+</strand>
        <context>TCCTTGTTTT[C/T]GAAGAAAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGATAACGCCATCTGATGAATTAATTATCAGTATAGAATTCCTTGTTTT</left_flank>
        <right_flank>GAAGAAAAAGAACCTTCATCAAAGCTTCAAAAAAATACAGATGGATGACG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCGAAGCTGCTCGAAGAAGTCTTCAGGGCGTTGGCAATGCAGCAGACACCACCAGTAGTTCTCGTTCAACCGCCCAAGAAACGACCGAAGCACAACTGTCCTTATTGATTTTTTTTCGGAAAATTAGAATTTGTCTTGATCATTGAATTGTAGTCAACGCGATTAGTATCCTCCCTAATTCTTTATTTTTTGAGGAGGACACTAATCGACAGAAAACGACGGGTTCCTCCTGTATGTTTATGTATTTTTTTTTTGAATTTTACCCACTTTATGTTTTCATTCTTGAATGCCCCTTGAATTTTATCGTCTACTGGTTCCCTGTTCTACCCCTCTTCTTTTATTAGTTTCTGCTATCAATCTGCAATTCGATTAGACGGTTTTTTTGGAATACAAAGATAATTTATGCCTTTTATCTGTTTGATTTCAATACCATTCAGAAATGAGAAACTTGATAACGCCATCTGATGAATTAATTATCAGTATAGAATTCCTTGTTTTCGAAGAAAAAGAACCTTCATCAAAGCTTCAAAAAAATACAGATGGATGACGATGAACAGAAAGGATACACCTGGGAGGCTGGTTACGCTGAAGGCTTGAACATCAATGAAGTTCTTGTCGAAGATGAGGGAGGATCCATTGAGAAATCAATTGCAAAATATGTGGCTGATAGCAAGCGTAAAGCGAGACTTACAAAACGACCTGAAAAAATTCGACTGGGAATTGTAATTATAAAATTAAAATTTATGAAAAGCTGTATGGCTTTTTTCAGATGCGACATGTCATGATCGTCATCGATTGCTCAAGATTTATGACAAGCAAGGCAATGCCTCCTTCCAGATTTGTAGTTGTGATGAAGGTACGATTTCGAAATGAATTCTTTATCTGGATGGCTTCTGAATAGTCTTATTCTTCAGGCGTTGCAACAGTTCCTCGAACGATTTTTCGAACAAAATCCGATTGCTCAAATCGGTCTGATCACTTGCAAAGATCGAAAAGCTG</canonical>
            <polymorphic>CCCGAAGCTGCTCGAAGAAGTCTTCAGGGCGTTGGCAATGCAGCAGACACCACCAGTAGTTCTCGTTCAACCGCCCAAGAAACGACCGAAGCACAACTGTCCTTATTGATTTTTTTTCGGAAAATTAGAATTTGTCTTGATCATTGAATTGTAGTCAACGCGATTAGTATCCTCCCTAATTCTTTATTTTTTGAGGAGGACACTAATCGACAGAAAACGACGGGTTCCTCCTGTATGTTTATGTATTTTTTTTTTGAATTTTACCCACTTTATGTTTTCATTCTTGAATGCCCCTTGAATTTTATCGTCTACTGGTTCCCTGTTCTACCCCTCTTCTTTTATTAGTTTCTGCTATCAATCTGCAATTCGATTAGACGGTTTTTTTGGAATACAAAGATAATTTATGCCTTTTATCTGTTTGATTTCAATACCATTCAGAAATGAGAAACTTGATAACGCCATCTGATGAATTAATTATCAGTATAGAATTCCTTGTTTTYGAAGAAAAAGAACCTTCATCAAAGCTTCAAAAAAATACAGATGGATGACGATGAACAGAAAGGATACACCTGGGAGGCTGGTTACGCTGAAGGCTTGAACATCAATGAAGTTCTTGTCGAAGATGAGGGAGGATCCATTGAGAAATCAATTGCAAAATATGTGGCTGATAGCAAGCGTAAAGCGAGACTTACAAAACGACCTGAAAAAATTCGACTGGGAATTGTAATTATAAAATTAAAATTTATGAAAAGCTGTATGGCTTTTTTCAGATGCGACATGTCATGATCGTCATCGATTGCTCAAGATTTATGACAAGCAAGGCAATGCCTCCTTCCAGATTTGTAGTTGTGATGAAGGTACGATTTCGAAATGAATTCTTTATCTGGATGGCTTCTGAATAGTCTTATTCTTCAGGCGTTGCAACAGTTCCTCGAACGATTTTTCGAACAAAATCCGATTGCTCAAATCGGTCTGATCACTTGCAAAGATCGAAAAGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>499 367 78 56</canonical_bands>
                <polymorphic_bands>866 78 56</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>195 160 132 118 94 82 73 66 46 13 12 9</canonical_bands>
                <polymorphic_bands>250 195 160 94 82 73 66 46 13 12 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGTTTGATTTCAATACCATTC</pcr_primer_p1>
		<pcr_primer_p2>ACATATTTTGCAATTGATTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTGTTTGATTTCAATACCATTCAGAAATGAGAAACTTGATAACGCCATCTGATGAATTAATTATCAGTATAGAATTCCTTGTTTTCGAAGAAAAAGAACCTTCATCAAAGCTTCAAAAAAATACAGATGGATGACGATGAACAGAAAGGATACACCTGGGAGGCTGGTTACGCTGAAGGCTTGAACATCAATGAAGTTCTTGTCGAAGATGAGGGAGGATCCATTGAGAAATCAATTGCAAAATATGT</canonical_amplicon>
		<polymorphic_amplicon>TCTGTTTGATTTCAATACCATTCAGAAATGAGAAACTTGATAACGCCATCTGATGAATTAATTATCAGTATAGAATTCCTTGTTTTYGAAGAAAAAGAACCTTCATCAAAGCTTCAAAAAAATACAGATGGATGACGATGAACAGAAAGGATACACCTGGGAGGCTGGTTACGCTGAAGGCTTGAACATCAATGAAGTTCTTGTCGAAGATGAGGGAGGATCCATTGAGAAATCAATTGCAAAATATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1563</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>101629</contig_pos>
        <strand>+</strand>
        <context>CCAGCTGCTC[A/G]GCGGTCAGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATCTGCACCTGTTAGTTTTTTAAGTAAAAAGAAGGGGACCAGCTGCTC</left_flank>
        <right_flank>GCGGTCAGCAACATTTTACGAATCTATGTCCCTTTCAAAGAAAAAAGAAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTGTATTAGAAAAGCCTATCCTTCTATTTTTCCAAGCCCAACTCGGAGAGTCCTTCTATTGGGCTCTTTTAATTCAGGTTTTACGGTATGTCCTTGTTTCCGTATTTCATCGTCTAAATTGAGTACTTTTTTTCTCTCATTTGAAAATTCTTGAACATTTCTCTATTAAATTCTTTAAGCCCTCACTTTTCGGAATCATTGTGACTCTTGGATTCGTTATGCATTTTTTCTAATGTATTTTCAAAAATCCTTAAGTTTCCAACAAATCGTTGAATGAAGAAACAATTTTTTGTAACCAGATCGAACAAAAATCGTAAAGGAGTGAGATGACAAAGCGTTTTGATGATTTCATTGGAGATAGTCCTTTTTCCATACACATTTGCTCCACTCAGGGTCTCGACATCTGGTGTCCGTACCAGACTCGAAAAAAATTTCCCCCAGATGGAATTCATCTGCACCTGTTAGTTTTTTAAGTAAAAAGAAGGGGACCAGCTGCTCAGCGGTCAGCAACATTTTACGAATCTATGTCCCTTTCAAAGAAAAAAGAACGGAGCAAAAAAAAACACAATTTTTGTTAACAATGAATTTATTCAGTTTCCAATTATCAAAGAATGATTTATGGACAGTCGAATCCTTCGGTGTGAATTCCGAGGTCGTGTTCGGCGCGCCAGATTCTGGTGATGAGGAAGTACTTGAAGAGCTCAACTAAAAAAAAGAGAGAATTGGAGAAGGAATTTTTACAAATCTAGGCTACCTGCAATGAGGAAAGCTGCTCCGGCCTCGACGATGAGTCCAGCGGTGGCACCGATGAAGAAGCGGAAGTCTGGAGACGTCAAGTTACCGTACTTCTCCGGATGGACGTGGGTGTCGTTGGCGTCCCATTTCTCCCATTCTCCAGAAGCAAGGAAGCTTGCTGTGAACACTGGGAGGAGAAGGAATGGAATCACAGAGAGGATTGAAGCGGCGAGCTGTAATTGATTATTAAGTTTCAGCTGGATT</canonical>
            <polymorphic>CCTGTATTAGAAAAGCCTATCCTTCTATTTTTCCAAGCCCAACTCGGAGAGTCCTTCTATTGGGCTCTTTTAATTCAGGTTTTACGGTATGTCCTTGTTTCCGTATTTCATCGTCTAAATTGAGTACTTTTTTTCTCTCATTTGAAAATTCTTGAACATTTCTCTATTAAATTCTTTAAGCCCTCACTTTTCGGAATCATTGTGACTCTTGGATTCGTTATGCATTTTTTCTAATGTATTTTCAAAAATCCTTAAGTTTCCAACAAATCGTTGAATGAAGAAACAATTTTTTGTAACCAGATCGAACAAAAATCGTAAAGGAGTGAGATGACAAAGCGTTTTGATGATTTCATTGGAGATAGTCCTTTTTCCATACACATTTGCTCCACTCAGGGTCTCGACATCTGGTGTCCGTACCAGACTCGAAAAAAATTTCCCCCAGATGGAATTCATCTGCACCTGTTAGTTTTTTAAGTAAAAAGAAGGGGACCAGCTGCTCRGCGGTCAGCAACATTTTACGAATCTATGTCCCTTTCAAAGAAAAAAGAACGGAGCAAAAAAAAACACAATTTTTGTTAACAATGAATTTATTCAGTTTCCAATTATCAAAGAATGATTTATGGACAGTCGAATCCTTCGGTGTGAATTCCGAGGTCGTGTTCGGCGCGCCAGATTCTGGTGATGAGGAAGTACTTGAAGAGCTCAACTAAAAAAAAGAGAGAATTGGAGAAGGAATTTTTACAAATCTAGGCTACCTGCAATGAGGAAAGCTGCTCCGGCCTCGACGATGAGTCCAGCGGTGGCACCGATGAAGAAGCGGAAGTCTGGAGACGTCAAGTTACCGTACTTCTCCGGATGGACGTGGGTGTCGTTGGCGTCCCATTTCTCCCATTCTCCAGAAGCAAGGAAGCTTGCTGTGAACACTGGGAGGAGAAGGAATGGAATCACAGAGAGGATTGAAGCGGCGAGCTGTAATTGATTATTAAGTTTCAGCTGGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCTNAGC</site>
                <isoschizomers>
                    <enzyme>BlpI</enzyme>
                    <enzyme>Bpu1102I</enzyme>
                    <enzyme>Bsp1720I</enzyme>
                    <enzyme>CelII</enzyme>
                    <enzyme>EspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 389 108</canonical_bands>
                <polymorphic_bands>611 389</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>493 296 196 8 7</canonical_bands>
                <polymorphic_bands>493 304 196 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTCATCTGCACCTGTTAGTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTACTTCCTCATCACCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTCATCTGCACCTGTTAGTTTTTTAAGTAAAAAGAAGGGGACCAGCTGCTCAGCGGTCAGCAACATTTTACGAATCTATGTCCCTTTCAAAGAAAAAAGAACGGAGCAAAAAAAAACACAATTTTTGTTAACAATGAATTTATTCAGTTTCCAATTATCAAAGAATGATTTATGGACAGTCGAATCCTTCGGTGTGAATTCCGAGGTCGTGTTCGGCGCGCCAGATTCTGGTGATGAGGAAGTACTT</canonical_amplicon>
		<polymorphic_amplicon>AATTCATCTGCACCTGTTAGTTTTTTAAGTAAAAAGAAGGGGACCAGCTGCTCRGCGGTCAGCAACATTTTACGAATCTATGTCCCTTTCAAAGAAAAAAGAACGGAGCAAAAAAAAACACAATTTTTGTTAACAATGAATTTATTCAGTTTCCAATTATCAAAGAATGATTTATGGACAGTCGAATCCTTCGGTGTGAATTCCGAGGTCGTGTTCGGCGCGCCAGATTCTGGTGATGAGGAAGTACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1564</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>108789</contig_pos>
        <strand>+</strand>
        <context>GTGTGTCTGT[G/T]AGCCGTCGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGACCTACATACAATATTGTGAAATTGATTAAAAATCAAGGTGTGTCTGT</left_flank>
        <right_flank>AGCCGTCGGATGTGATTAACAGCTGAGAGCATACTTGTTTATCAGGTTTG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAATTCCTGAAAATATTAGTATAACACAACAAACATCGTGTCCTAAAACGTTCTAAAGTTGAGAAAATCTTCTTCGAGAATCGCTGTTCTTCACTGAAAACGCGATTTGGTTCCGAAACTCATAAATCTCGGATGGCGAGCGGATTCCAATAATTTCATAGGTGTCTTGACAGACTATAACCCATACTTGCAACAATTGTTGAAGACCCGGCCCGGCCCGGATAGGAATTTTTTGGTCGAAATATATCACAAAAAATTTTTTAATCGACTTTTGAAGAGTTTTTTTTACAAAAAAAAGTTTTTGAGTAAAAAAAAGCGTTCTTGGTTTAAAGTTCCTGAAGGCACTTAAAATGGTGGATGAATACAAACGACTTCTGGCATCGGTCAGGGTTTGAGAATTTTGTTCACCAAAAACTGTATTGATTGATTCACACAATCTAGAATTCCTGACCTACATACAATATTGTGAAATTGATTAAAAATCAAGGTGTGTCTGTTAGCCGTCGGATGTGATTAACAGCTGAGAGCATACTTGTTTATCAGGTTTGTCGAGAGATGAGAAAGATCATAGGAATATCTTGGATTACAAAAATAACATATCCATTTCAGATTTGTTATTATTTTCCGGTGACATTTGCAGTTAGCATCTGATGTTCTTTCAAACATTCTAATCCGTCAGATTAGCTAATCTTTCCAAATAGTATTCAGTTTTTTCATGACTCGGCGGAGTCACCGATGTTCAATATCTTGAACTCCGCCTCTTTTTTCTATAAAATGGAGATCCCCTGGTGAAAGGTTATTCAGTGAATTCGTTTAACATGAATCTCTGCACCTTTTCTCTTTTCGTTCTCCTCACCATCAGCTTCGAGTTCCATCATTATCTCTAATCTTCATCAACTTGAGTTTATTTTCCAATATTTACAGCAGTCTGGATCAAATTACTGATAGATGAATGATGTTCAAGTCTGAAAGAAAAATTAACATCTTCAAAAACTCTT</canonical>
            <polymorphic>AACAATTCCTGAAAATATTAGTATAACACAACAAACATCGTGTCCTAAAACGTTCTAAAGTTGAGAAAATCTTCTTCGAGAATCGCTGTTCTTCACTGAAAACGCGATTTGGTTCCGAAACTCATAAATCTCGGATGGCGAGCGGATTCCAATAATTTCATAGGTGTCTTGACAGACTATAACCCATACTTGCAACAATTGTTGAAGACCCGGCCCGGCCCGGATAGGAATTTTTTGGTCGAAATATATCACAAAAAATTTTTTAATCGACTTTTGAAGAGTTTTTTTTACAAAAAAAAGTTTTTGAGTAAAAAAAAGCGTTCTTGGTTTAAAGTTCCTGAAGGCACTTAAAATGGTGGATGAATACAAACGACTTCTGGCATCGGTCAGGGTTTGAGAATTTTGTTCACCAAAAACTGTATTGATTGATTCACACAATCTAGAATTCCTGACCTACATACAATATTGTGAAATTGATTAAAAATCAAGGTGTGTCTGTKAGCCGTCGGATGTGATTAACAGCTGAGAGCATACTTGTTTATCAGGTTTGTCGAGAGATGAGAAAGATCATAGGAATATCTTGGATTACAAAAATAACATATCCATTTCAGATTTGTTATTATTTTCCGGTGACATTTGCAGTTAGCATCTGATGTTCTTTCAAACATTCTAATCCGTCAGATTAGCTAATCTTTCCAAATAGTATTCAGTTTTTTCATGACTCGGCGGAGTCACCGATGTTCAATATCTTGAACTCCGCCTCTTTTTTCTATAAAATGGAGATCCCCTGGTGAAAGGTTATTCAGTGAATTCGTTTAACATGAATCTCTGCACCTTTTCTCTTTTCGTTCTCCTCACCATCAGCTTCGAGTTCCATCATTATCTCTAATCTTCATCAACTTGAGTTTATTTTCCAATATTTACAGCAGTCTGGATCAAATTACTGATAGATGAATGATGTTCAAGTCTGAAAGAAAAATTAACATCTTCAAAAACTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAATCTAGAATTCCTGACCTA</pcr_primer_p1>
		<pcr_primer_p2>GGATTAGAATGTTTGAAAGAACA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CACAATCTAGAATTCCTGACCTACATACAATATTGTGAAATTGATTAAAAATCAAGGTGTGTCTGTTAGCCGTCGGATGTGATTAACAGCTGAGAGCATACTTGTTTATCAGGTTTGTCGAGAGATGAGAAAGATCATAGGAATATCTTGGATTACAAAAATAACATATCCATTTCAGATTTGTTATTATTTTCCGGTGACATTTGCAGTTAGCATCTGATGTTCTTTCAAACATTCTAATCC</canonical_amplicon>
		<polymorphic_amplicon>CACAATCTAGAATTCCTGACCTACATACAATATTGTGAAATTGATTAAAAATCAAGGTGTGTCTGTKAGCCGTCGGATGTGATTAACAGCTGAGAGCATACTTGTTTATCAGGTTTGTCGAGAGATGAGAAAGATCATAGGAATATCTTGGATTACAAAAATAACATATCCATTTCAGATTTGTTATTATTTTCCGGTGACATTTGCAGTTAGCATCTGATGTTCTTTCAAACATTCTAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1565</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>112391</contig_pos>
        <strand>+</strand>
        <context>TGTCTACGAA[C/T]AAAGTCATGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTACGCACTACGAAACGATACCATTTGGATTACTGTTTCTTGTCTACGAA</left_flank>
        <right_flank>AAAGTCATGCGGCTAATCTGAGCATGGTAACGCTTGTTTTTTTCCGCCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCGAGGGCAGCATTGGCCGCCCTCGAGTATGGTGACGACTTCGACCCTAGGTACACTTTTATACTTGTAAAGACCCATAAAACGTGCCGACTCCGAGAATGAATTAAACTGATTAGGTTCTGAAGTCAATGGTAAAAAAGTTCTGCGGCATCGCGTGTTGAACAATGGAGGTCCCGCCTTCTCTCAGTTTGATTAGTCTGGAATTTTGGTATTCTTAATCTAGAAATCACAGGAATGGGTCTTGACCGATATTCAGACAGCGAGATGGGTAATATTGGCCTCTGAGTTGAGACTGTTGTGAGTGGGAAAAATATCAAAAGGTACTTCAATCATTGAAGTTCAATATATACTTGTAATCCAAGCCATGGCGGGCCTTCGCTGGGCCCGTCATAGTTTCTTTTAAAATCAAATTTTTTGCACTAACTTGATGATATGTATAACTCGCACTACGCACTACGAAACGATACCATTTGGATTACTGTTTCTTGTCTACGAACAAAGTCATGCGGCTAATCTGAGCATGGTAACGCTTGTTTTTTTCCGCCCGGTTTGTCTATAACTTTGTTCATAGACAAGATACAATTTTTATAATAGTATGATTTTGTAGTACTTGTTGAGTTCTATCATCTCCGATTCAGGTGGTCCGAACATATTTGATTCTAAAAGAAACTATGGCTACTTAGGAAGGCAGGTCTATGAACGATTTACAAGTATGCTTCAATGATTGGAAGGTCTTTGTGATATATGAATTTTGTGGAAGATCTGGTCTAAGAGACTGTAGTAGTTGGTTAATTCTTTGCAACGCGACGACAGGAGAACTGTCACAGTGCTGAAATGCCAGTTTACTAAAGTTGAGCGTCTCAACTCTCTGGCTATTTAGCCTATCCTCTTTTCATTTCGAGTTTCCTATTTCGACCCAATCCCGTTTCATTTGCTGCTTCTGTCAACGATTCTGGAATTTTTAGGCGATATCTTCTCTCCGATTAAATTTCTTCTT</canonical>
            <polymorphic>AATTCGAGGGCAGCATTGGCCGCCCTCGAGTATGGTGACGACTTCGACCCTAGGTACACTTTTATACTTGTAAAGACCCATAAAACGTGCCGACTCCGAGAATGAATTAAACTGATTAGGTTCTGAAGTCAATGGTAAAAAAGTTCTGCGGCATCGCGTGTTGAACAATGGAGGTCCCGCCTTCTCTCAGTTTGATTAGTCTGGAATTTTGGTATTCTTAATCTAGAAATCACAGGAATGGGTCTTGACCGATATTCAGACAGCGAGATGGGTAATATTGGCCTCTGAGTTGAGACTGTTGTGAGTGGGAAAAATATCAAAAGGTACTTCAATCATTGAAGTTCAATATATACTTGTAATCCAAGCCATGGCGGGCCTTCGCTGGGCCCGTCATAGTTTCTTTTAAAATCAAATTTTTTGCACTAACTTGATGATATGTATAACTCGCACTACGCACTACGAAACGATACCATTTGGATTACTGTTTCTTGTCTACGAAYAAAGTCATGCGGCTAATCTGAGCATGGTAACGCTTGTTTTTTTCCGCCCGGTTTGTCTATAACTTTGTTCATAGACAAGATACAATTTTTATAATAGTATGATTTTGTAGTACTTGTTGAGTTCTATCATCTCCGATTCAGGTGGTCCGAACATATTTGATTCTAAAAGAAACTATGGCTACTTAGGAAGGCAGGTCTATGAACGATTTACAAGTATGCTTCAATGATTGGAAGGTCTTTGTGATATATGAATTTTGTGGAAGATCTGGTCTAAGAGACTGTAGTAGTTGGTTAATTCTTTGCAACGCGACGACAGGAGAACTGTCACAGTGCTGAAATGCCAGTTTACTAAAGTTGAGCGTCTCAACTCTCTGGCTATTTAGCCTATCCTCTTTTCATTTCGAGTTTCCTATTTCGACCCAATCCCGTTTCATTTGCTGCTTCTGTCAACGATTCTGGAATTTTTAGGCGATATCTTCTCTCCGATTAAATTTCTTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTACGCACTACGAAACGATAC</pcr_primer_p1>
		<pcr_primer_p2>CATAGACCTGCCTTCCTAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTACGCACTACGAAACGATACCATTTGGATTACTGTTTCTTGTCTACGAACAAAGTCATGCGGCTAATCTGAGCATGGTAACGCTTGTTTTTTTCCGCCCGGTTTGTCTATAACTTTGTTCATAGACAAGATACAATTTTTATAATAGTATGATTTTGTAGTACTTGTTGAGTTCTATCATCTCCGATTCAGGTGGTCCGAACATATTTGATTCTAAAAGAAACTATGGCTACTTAGGAAGGCAGGTCTATG</canonical_amplicon>
		<polymorphic_amplicon>CTACGCACTACGAAACGATACCATTTGGATTACTGTTTCTTGTCTACGAAYAAAGTCATGCGGCTAATCTGAGCATGGTAACGCTTGTTTTTTTCCGCCCGGTTTGTCTATAACTTTGTTCATAGACAAGATACAATTTTTATAATAGTATGATTTTGTAGTACTTGTTGAGTTCTATCATCTCCGATTCAGGTGGTCCGAACATATTTGATTCTAAAAGAAACTATGGCTACTTAGGAAGGCAGGTCTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1566</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>112320</contig_pos>
        <strand>+</strand>
        <context>TGCACTAACT[A/T]GATGATATGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGCTGGGCCCGTCATAGTTTCTTTTAAAATCAAATTTTTTGCACTAACT</left_flank>
        <right_flank>GATGATATGTATAACTCGCACTACGCACTACGAAACGATACCATTTGGAT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATAGTCACGATTTTTTTCGCGACTAGCTTCAAGCTGCGTAACTCTCGAGCCATCAAATCTCCTTCTTCAGAATTCGAGGGCAGCATTGGCCGCCCTCGAGTATGGTGACGACTTCGACCCTAGGTACACTTTTATACTTGTAAAGACCCATAAAACGTGCCGACTCCGAGAATGAATTAAACTGATTAGGTTCTGAAGTCAATGGTAAAAAAGTTCTGCGGCATCGCGTGTTGAACAATGGAGGTCCCGCCTTCTCTCAGTTTGATTAGTCTGGAATTTTGGTATTCTTAATCTAGAAATCACAGGAATGGGTCTTGACCGATATTCAGACAGCGAGATGGGTAATATTGGCCTCTGAGTTGAGACTGTTGTGAGTGGGAAAAATATCAAAAGGTACTTCAATCATTGAAGTTCAATATATACTTGTAATCCAAGCCATGGCGGGCCTTCGCTGGGCCCGTCATAGTTTCTTTTAAAATCAAATTTTTTGCACTAACTTGATGATATGTATAACTCGCACTACGCACTACGAAACGATACCATTTGGATTACTGTTTCTTGTCTACGAACAAAGTCATGCGGCTAATCTGAGCATGGTAACGCTTGTTTTTTTCCGCCCGGTTTGTCTATAACTTTGTTCATAGACAAGATACAATTTTTATAATAGTATGATTTTGTAGTACTTGTTGAGTTCTATCATCTCCGATTCAGGTGGTCCGAACATATTTGATTCTAAAAGAAACTATGGCTACTTAGGAAGGCAGGTCTATGAACGATTTACAAGTATGCTTCAATGATTGGAAGGTCTTTGTGATATATGAATTTTGTGGAAGATCTGGTCTAAGAGACTGTAGTAGTTGGTTAATTCTTTGCAACGCGACGACAGGAGAACTGTCACAGTGCTGAAATGCCAGTTTACTAAAGTTGAGCGTCTCAACTCTCTGGCTATTTAGCCTATCCTCTTTTCATTTCGAGTTTCCTATTTCGACCCAATCCCGT</canonical>
            <polymorphic>CATAGTCACGATTTTTTTCGCGACTAGCTTCAAGCTGCGTAACTCTCGAGCCATCAAATCTCCTTCTTCAGAATTCGAGGGCAGCATTGGCCGCCCTCGAGTATGGTGACGACTTCGACCCTAGGTACACTTTTATACTTGTAAAGACCCATAAAACGTGCCGACTCCGAGAATGAATTAAACTGATTAGGTTCTGAAGTCAATGGTAAAAAAGTTCTGCGGCATCGCGTGTTGAACAATGGAGGTCCCGCCTTCTCTCAGTTTGATTAGTCTGGAATTTTGGTATTCTTAATCTAGAAATCACAGGAATGGGTCTTGACCGATATTCAGACAGCGAGATGGGTAATATTGGCCTCTGAGTTGAGACTGTTGTGAGTGGGAAAAATATCAAAAGGTACTTCAATCATTGAAGTTCAATATATACTTGTAATCCAAGCCATGGCGGGCCTTCGCTGGGCCCGTCATAGTTTCTTTTAAAATCAAATTTTTTGCACTAACTWGATGATATGTATAACTCGCACTACGCACTACGAAACGATACCATTTGGATTACTGTTTCTTGTCTACGAACAAAGTCATGCGGCTAATCTGAGCATGGTAACGCTTGTTTTTTTCCGCCCGGTTTGTCTATAACTTTGTTCATAGACAAGATACAATTTTTATAATAGTATGATTTTGTAGTACTTGTTGAGTTCTATCATCTCCGATTCAGGTGGTCCGAACATATTTGATTCTAAAAGAAACTATGGCTACTTAGGAAGGCAGGTCTATGAACGATTTACAAGTATGCTTCAATGATTGGAAGGTCTTTGTGATATATGAATTTTGTGGAAGATCTGGTCTAAGAGACTGTAGTAGTTGGTTAATTCTTTGCAACGCGACGACAGGAGAACTGTCACAGTGCTGAAATGCCAGTTTACTAAAGTTGAGCGTCTCAACTCTCTGGCTATTTAGCCTATCCTCTTTTCATTTCGAGTTTCCTATTTCGACCCAATCCCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATATCAAAAGGTACTTCAATCAT</pcr_primer_p1>
		<pcr_primer_p2>CATAGACCTGCCTTCCTAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>390</pcr_amplicon_size>
		<canonical_amplicon>AAATATCAAAAGGTACTTCAATCATTGAAGTTCAATATATACTTGTAATCCAAGCCATGGCGGGCCTTCGCTGGGCCCGTCATAGTTTCTTTTAAAATCAAATTTTTTGCACTAACTTGATGATATGTATAACTCGCACTACGCACTACGAAACGATACCATTTGGATTACTGTTTCTTGTCTACGAACAAAGTCATGCGGCTAATCTGAGCATGGTAACGCTTGTTTTTTTCCGCCCGGTTTGTCTATAACTTTGTTCATAGACAAGATACAATTTTTATAATAGTATGATTTTGTAGTACTTGTTGAGTTCTATCATCTCCGATTCAGGTGGTCCGAACATATTTGATTCTAAAAGAAACTATGGCTACTTAGGAAGGCAGGTCTATG</canonical_amplicon>
		<polymorphic_amplicon>AAATATCAAAAGGTACTTCAATCATTGAAGTTCAATATATACTTGTAATCCAAGCCATGGCGGGCCTTCGCTGGGCCCGTCATAGTTTCTTTTAAAATCAAATTTTTTGCACTAACTWGATGATATGTATAACTCGCACTACGCACTACGAAACGATACCATTTGGATTACTGTTTCTTGTCTACGAACAAAGTCATGCGGCTAATCTGAGCATGGTAACGCTTGTTTTTTTCCGCCCGGTTTGTCTATAACTTTGTTCATAGACAAGATACAATTTTTATAATAGTATGATTTTGTAGTACTTGTTGAGTTCTATCATCTCCGATTCAGGTGGTCCGAACATATTTGATTCTAAAAGAAACTATGGCTACTTAGGAAGGCAGGTCTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1632</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>124707</contig_pos>
        <strand>+</strand>
        <context>TAATTCTTGT[A/G]TGTTTTGTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATTAATTTATTTAATAATACATGTTTTTGAAGAAGTTGTAATTCTTGT</left_flank>
        <right_flank>TGTTTTGTCGGATAATTTATCAATATTTCCTTTATTTGTTTCCTGTTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTACAAGTATTAACAAAATTTGTCAAAAATGAGGAAGATTTTTTTTTTCGATGTGAGAAATGTTAAAAGACATATATGACTGGGAAGCGTATTAAGATGTTTGAGACAAATCGGTTAAATTCGAATAGGCAATTAAGCTTATTGAATTCACAGGCTTTGGTGAGAAAGCTAAATTTTTTAGTTTATATTACACGGACCGAGGGATGAAAAATGAAAATTCGCGAGCTTTACTAGAGAGAGTTATGGGATGTATATAAGACACACGCGCGGAGGGGGAGAGGGGCGCGCGAACCGGCGCCGTAATGACTCATCCATGTGATGACTCATCATGGGTGGTCTTCGGAGGGGTGTTCGGAGATTCTTTAAGAAAAGTCTGATCTTTTTAATTAGTTGTAGATTAATTTATATTTTGTATATTTATTTTAGAATTAATTAATTCCTTTCAGGTTTTATTAATTTATTTAATAATACATGTTTTTGAAGAAGTTGTAATTCTTGTATGTTTTGTCGGATAATTTATCAATATTTCCTTTATTTGTTTCCTGTTTCTATTGTTTTGTTTATTTTTAATCATTTAATTTGAAATTTCAATGAGGGTTCTTCAATGGGGTAAGAGAACCAATCTTTTAATTTTGTTTGCCTTTTAACTAGTCTGACTAAGGAAAATAACTTCAGTTANNNNNNNNNNNAAATTCGTAGAAAGTAATATCAAACTGAGTTACAAACAATTCGTATATTAAAAGAATTTTCAATTTATAAGGTCGCATCTGAATTAAAATACATAAATGTTACTGTTGCACGTGGTACTTTCTCATCGAGAATGTTGTTTGAGTGCAGCACACACCGAATAACGTCACGAATTGTGACTTCTTCAATTGGTTGAAACTTAGCACCAAAATATCCAGAGTGATCACCACCTTCAATGGAAATCGATACAATTGTCTCCTTCTTGGTGAAGGGGTTGTGAGATTTCAACAGCGCGACAATGTAATCACAAAAA</canonical>
            <polymorphic>TTACAAGTATTAACAAAATTTGTCAAAAATGAGGAAGATTTTTTTTTTCGATGTGAGAAATGTTAAAAGACATATATGACTGGGAAGCGTATTAAGATGTTTGAGACAAATCGGTTAAATTCGAATAGGCAATTAAGCTTATTGAATTCACAGGCTTTGGTGAGAAAGCTAAATTTTTTAGTTTATATTACACGGACCGAGGGATGAAAAATGAAAATTCGCGAGCTTTACTAGAGAGAGTTATGGGATGTATATAAGACACACGCGCGGAGGGGGAGAGGGGCGCGCGAACCGGCGCCGTAATGACTCATCCATGTGATGACTCATCATGGGTGGTCTTCGGAGGGGTGTTCGGAGATTCTTTAAGAAAAGTCTGATCTTTTTAATTAGTTGTAGATTAATTTATATTTTGTATATTTATTTTAGAATTAATTAATTCCTTTCAGGTTTTATTAATTTATTTAATAATACATGTTTTTGAAGAAGTTGTAATTCTTGTRTGTTTTGTCGGATAATTTATCAATATTTCCTTTATTTGTTTCCTGTTTCTATTGTTTTGTTTATTTTTAATCATTTAATTTGAAATTTCAATGAGGGTTCTTCAATGGGGTAAGAGAACCAATCTTTTAATTTTGTTTGCCTTTTAACTAGTCTGACTAAGGAAAATAACTTCAGTTANNNNNNNNNNNAAATTCGTAGAAAGTAATATCAAACTGAGTTACAAACAATTCGTATATTAAAAGAATTTTCAATTTATAAGGTCGCATCTGAATTAAAATACATAAATGTTACTGTTGCACGTGGTACTTTCTCATCGAGAATGTTGTTTGAGTGCAGCACACACCGAATAACGTCACGAATTGTGACTTCTTCAATTGGTTGAAACTTAGCACCAAAATATCCAGAGTGATCACCACCTTCAATGGAAATCGATACAATTGTCTCCTTCTTGGTGAAGGGGTTGTGAGATTTCAACAGCGCGACAATGTAATCACAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGTAATGACTCATCCATGT</pcr_primer_p1>
		<pcr_primer_p2>AAACAATAGAAACAGGAAACAAA</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>CCGTAATGACTCATCCATGTGATGACTCATCATGGGTGGTCTTCGGAGGGGTGTTCGGAGATTCTTTAAGAAAAGTCTGATCTTTTTAATTAGTTGTAGATTAATTTATATTTTGTATATTTATTTTAGAATTAATTAATTCCTTTCAGGTTTTATTAATTTATTTAATAATACATGTTTTTGAAGAAGTTGTAATTCTTGTATGTTTTGTCGGATAATTTATCAATATTTCCTTTATTTGTTTCCTGTTTCTATTGTTT</canonical_amplicon>
		<polymorphic_amplicon>CCGTAATGACTCATCCATGTGATGACTCATCATGGGTGGTCTTCGGAGGGGTGTTCGGAGATTCTTTAAGAAAAGTCTGATCTTTTTAATTAGTTGTAGATTAATTTATATTTTGTATATTTATTTTAGAATTAATTAATTCCTTTCAGGTTTTATTAATTTATTTAATAATACATGTTTTTGAAGAAGTTGTAATTCTTGTRTGTTTTGTCGGATAATTTATCAATATTTCCTTTATTTGTTTCCTGTTTCTATTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1633</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>124846</contig_pos>
        <strand>+</strand>
        <context>AATTTTGTTT[C/G]CMTTTTAACT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAATGAGGGTTCTTCAATGGGGTAAGAGAACCAATCTTTTAATTTTGTTT</left_flank>
        <right_flank>CCTTTTAACTAGTCTGACTAAGGAAAATAACTTCAGTTANNNNNNNNNNN</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTGAATTCACAGGCTTTGGTGAGAAAGCTAAATTTTTTAGTTTATATTACACGGACCGAGGGATGAAAAATGAAAATTCGCGAGCTTTACTAGAGAGAGTTATGGGATGTATATAAGACACACGCGCGGAGGGGGAGAGGGGCGCGCGAACCGGCGCCGTAATGACTCATCCATGTGATGACTCATCATGGGTGGTCTTCGGAGGGGTGTTCGGAGATTCTTTAAGAAAAGTCTGATCTTTTTAATTAGTTGTAGATTAATTTATATTTTGTATATTTATTTTAGAATTAATTAATTCCTTTCAGGTTTTATTAATTTATTTAATAATACATGTTTTTGAAGAAGTTGTAATTCTTGTATGTTTTGTCGGATAATTTATCAATATTTCCTTTATTTGTTTCCTGTTTCTATTGTTTTGTTTATTTTTAATCATTTAATTTGAAATTTCAATGAGGGTTCTTCAATGGGGTAAGAGAACCAATCTTTTAATTTTGTTTGCCTTTTAACTAGTCTGACTAAGGAAAATAACTTCAGTTANNNNNNNNNNNAAATTCGTAGAAAGTAATATCAAACTGAGTTACAAACAATTCGTATATTAAAAGAATTTTCAATTTATAAGGTCGCATCTGAATTAAAATACATAAATGTTACTGTTGCACGTGGTACTTTCTCATCGAGAATGTTGTTTGAGTGCAGCACACACCGAATAACGTCACGAATTGTGACTTCTTCAATTGGTTGAAACTTAGCACCAAAATATCCAGAGTGATCACCACCTTCAATGGAAATCGATACAATTGTCTCCTTCTTGGTGAAGGGGTTGTGAGATTTCAACAGCGCGACAATGTAATCACAAAAACATTTGCACCGGGCTCTGTCAAAATGATACTTCTTGACATCTGGAGTAGAAACTCGATCGACTTCATCTGTCCATTGCTTTTGTCAGCAGAAATTTTGTCAGTCTTTCTCAATACATGGATTTTGAAAAATGACTCCTA</canonical>
            <polymorphic>TATTGAATTCACAGGCTTTGGTGAGAAAGCTAAATTTTTTAGTTTATATTACACGGACCGAGGGATGAAAAATGAAAATTCGCGAGCTTTACTAGAGAGAGTTATGGGATGTATATAAGACACACGCGCGGAGGGGGAGAGGGGCGCGCGAACCGGCGCCGTAATGACTCATCCATGTGATGACTCATCATGGGTGGTCTTCGGAGGGGTGTTCGGAGATTCTTTAAGAAAAGTCTGATCTTTTTAATTAGTTGTAGATTAATTTATATTTTGTATATTTATTTTAGAATTAATTAATTCCTTTCAGGTTTTATTAATTTATTTAATAATACATGTTTTTGAAGAAGTTGTAATTCTTGTATGTTTTGTCGGATAATTTATCAATATTTCCTTTATTTGTTTCCTGTTTCTATTGTTTTGTTTATTTTTAATCATTTAATTTGAAATTTCAATGAGGGTTCTTCAATGGGGTAAGAGAACCAATCTTTTAATTTTGTTTSCCTTTTAACTAGTCTGACTAAGGAAAATAACTTCAGTTANNNNNNNNNNNAAATTCGTAGAAAGTAATATCAAACTGAGTTACAAACAATTCGTATATTAAAAGAATTTTCAATTTATAAGGTCGCATCTGAATTAAAATACATAAATGTTACTGTTGCACGTGGTACTTTCTCATCGAGAATGTTGTTTGAGTGCAGCACACACCGAATAACGTCACGAATTGTGACTTCTTCAATTGGTTGAAACTTAGCACCAAAATATCCAGAGTGATCACCACCTTCAATGGAAATCGATACAATTGTCTCCTTCTTGGTGAAGGGGTTGTGAGATTTCAACAGCGCGACAATGTAATCACAAAAACATTTGCACCGGGCTCTGTCAAAATGATACTTCTTGACATCTGGAGTAGAAACTCGATCGACTTCATCTGTCCATTGCTTTTGTCAGCAGAAATTTTGTCAGTCTTTCTCAATACATGGATTTTGAAAAATGACTCCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCCTTTATTTGTTTCCTGTT</pcr_primer_p1>
		<pcr_primer_p2>AATTCAGATGCGACCTTATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTCCTTTATTTGTTTCCTGTTTCTATTGTTTTGTTTATTTTTAATCATTTAATTTGAAATTTCAATGAGGGTTCTTCAATGGGGTAAGAGAACCAATCTTTTAATTTTGTTTGCCTTTTAACTAGTCTGACTAAGGAAAATAACTTCAGTTANNNNNNNNNNNAAATTCGTAGAAAGTAATATCAAACTGAGTTACAAACAATTCGTATATTAAAAGAATTTTCAATTTATAAGGTCGCATCTGAATT</canonical_amplicon>
		<polymorphic_amplicon>ATTTCCTTTATTTGTTTCCTGTTTCTATTGTTTTGTTTATTTTTAATCATTTAATTTGAAATTTCAATGAGGGTTCTTCAATGGGGTAAGAGAACCAATCTTTTAATTTTGTTTSCCTTTTAACTAGTCTGACTAAGGAAAATAACTTCAGTTANNNNNNNNNNNAAATTCGTAGAAAGTAATATCAAACTGAGTTACAAACAATTCGTATATTAAAAGAATTTTCAATTTATAAGGTCGCATCTGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1634</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>124848</contig_pos>
        <strand>+</strand>
        <context>TTTTGTTTSC[A/C]TTTTAACTAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGAGGGTTCTTCAATGGGGTAAGAGAACCAATCTTTTAATTTTGTTTGC</left_flank>
        <right_flank>TTTTAACTAGTCTGACTAAGGAAAATAACTTCAGTTANNNNNNNNNNNAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAATTCACAGGCTTTGGTGAGAAAGCTAAATTTTTTAGTTTATATTACACGGACCGAGGGATGAAAAATGAAAATTCGCGAGCTTTACTAGAGAGAGTTATGGGATGTATATAAGACACACGCGCGGAGGGGGAGAGGGGCGCGCGAACCGGCGCCGTAATGACTCATCCATGTGATGACTCATCATGGGTGGTCTTCGGAGGGGTGTTCGGAGATTCTTTAAGAAAAGTCTGATCTTTTTAATTAGTTGTAGATTAATTTATATTTTGTATATTTATTTTAGAATTAATTAATTCCTTTCAGGTTTTATTAATTTATTTAATAATACATGTTTTTGAAGAAGTTGTAATTCTTGTATGTTTTGTCGGATAATTTATCAATATTTCCTTTATTTGTTTCCTGTTTCTATTGTTTTGTTTATTTTTAATCATTTAATTTGAAATTTCAATGAGGGTTCTTCAATGGGGTAAGAGAACCAATCTTTTAATTTTGTTTGCCTTTTAACTAGTCTGACTAAGGAAAATAACTTCAGTTANNNNNNNNNNNAAATTCGTAGAAAGTAATATCAAACTGAGTTACAAACAATTCGTATATTAAAAGAATTTTCAATTTATAAGGTCGCATCTGAATTAAAATACATAAATGTTACTGTTGCACGTGGTACTTTCTCATCGAGAATGTTGTTTGAGTGCAGCACACACCGAATAACGTCACGAATTGTGACTTCTTCAATTGGTTGAAACTTAGCACCAAAATATCCAGAGTGATCACCACCTTCAATGGAAATCGATACAATTGTCTCCTTCTTGGTGAAGGGGTTGTGAGATTTCAACAGCGCGACAATGTAATCACAAAAACATTTGCACCGGGCTCTGTCAAAATGATACTTCTTGACATCTGGAGTAGAAACTCGATCGACTTCATCTGTCCATTGCTTTTGTCAGCAGAAATTTTGTCAGTCTTTCTCAATACATGGATTTTGAAAAATGACTCCTAAT</canonical>
            <polymorphic>TTGAATTCACAGGCTTTGGTGAGAAAGCTAAATTTTTTAGTTTATATTACACGGACCGAGGGATGAAAAATGAAAATTCGCGAGCTTTACTAGAGAGAGTTATGGGATGTATATAAGACACACGCGCGGAGGGGGAGAGGGGCGCGCGAACCGGCGCCGTAATGACTCATCCATGTGATGACTCATCATGGGTGGTCTTCGGAGGGGTGTTCGGAGATTCTTTAAGAAAAGTCTGATCTTTTTAATTAGTTGTAGATTAATTTATATTTTGTATATTTATTTTAGAATTAATTAATTCCTTTCAGGTTTTATTAATTTATTTAATAATACATGTTTTTGAAGAAGTTGTAATTCTTGTATGTTTTGTCGGATAATTTATCAATATTTCCTTTATTTGTTTCCTGTTTCTATTGTTTTGTTTATTTTTAATCATTTAATTTGAAATTTCAATGAGGGTTCTTCAATGGGGTAAGAGAACCAATCTTTTAATTTTGTTTGCMTTTTAACTAGTCTGACTAAGGAAAATAACTTCAGTTANNNNNNNNNNNAAATTCGTAGAAAGTAATATCAAACTGAGTTACAAACAATTCGTATATTAAAAGAATTTTCAATTTATAAGGTCGCATCTGAATTAAAATACATAAATGTTACTGTTGCACGTGGTACTTTCTCATCGAGAATGTTGTTTGAGTGCAGCACACACCGAATAACGTCACGAATTGTGACTTCTTCAATTGGTTGAAACTTAGCACCAAAATATCCAGAGTGATCACCACCTTCAATGGAAATCGATACAATTGTCTCCTTCTTGGTGAAGGGGTTGTGAGATTTCAACAGCGCGACAATGTAATCACAAAAACATTTGCACCGGGCTCTGTCAAAATGATACTTCTTGACATCTGGAGTAGAAACTCGATCGACTTCATCTGTCCATTGCTTTTGTCAGCAGAAATTTTGTCAGTCTTTCTCAATACATGGATTTTGAAAAATGACTCCTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCCTTTATTTGTTTCCTGTT</pcr_primer_p1>
		<pcr_primer_p2>AATTCAGATGCGACCTTATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTCCTTTATTTGTTTCCTGTTTCTATTGTTTTGTTTATTTTTAATCATTTAATTTGAAATTTCAATGAGGGTTCTTCAATGGGGTAAGAGAACCAATCTTTTAATTTTGTTTGCCTTTTAACTAGTCTGACTAAGGAAAATAACTTCAGTTANNNNNNNNNNNAAATTCGTAGAAAGTAATATCAAACTGAGTTACAAACAATTCGTATATTAAAAGAATTTTCAATTTATAAGGTCGCATCTGAATT</canonical_amplicon>
		<polymorphic_amplicon>ATTTCCTTTATTTGTTTCCTGTTTCTATTGTTTTGTTTATTTTTAATCATTTAATTTGAAATTTCAATGAGGGTTCTTCAATGGGGTAAGAGAACCAATCTTTTAATTTTGTTTGCMTTTTAACTAGTCTGACTAAGGAAAATAACTTCAGTTANNNNNNNNNNNAAATTCGTAGAAAGTAATATCAAACTGAGTTACAAACAATTCGTATATTAAAAGAATTTTCAATTTATAAGGTCGCATCTGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1635</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>125968</contig_pos>
        <strand>+</strand>
        <context>ATCATGCCGC[C/T]TGGTGAATAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGTAATCTCGAATATTCTATTCTACACGTGTCGGAGGTATCATGCCGC</left_flank>
        <right_flank>TGGTGAATAAATGAAGAAGCACCGTACACTTGTAATCAAAGTAAGAATAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGCATATTCAACAAGTGATCCATTATGCCGAAATTTAAATTGGTTCAAGTATAGAAGAAAAGTAAGAAGAGAATCCAACGGATGATTAAAAAAAAGTTTGAAACAGAAATACATACAACTGAAGCTTTTAATCGAGAAGCCGATCTTTGAACTAGATCTTTGAACTAACCTAGATCCCTGCAATGTTGTGACTATTGTATATAATCAAATTTTGCAGAACTCAGCAAAACTTTCCTCACCGATACTCTCTAAAAGTGTACATAGATTCTGGAATTCACTACCGATGGAACTGTTCCCGGCTAAGCCTTTGCCAAAGGCATTTCAATACAGACTGTCAAACTGTGATCTTTAAGATTATTCAAACCGCAACAGTTACTAACCACTAATGTTTCCCAACATACCCTGTTATCTAATAGCAGCAATCTAGTTTGTCTAATATTTTGTTGAATTGTAATCTCGAATATTCTATTCTACACGTGTCGGAGGTATCATGCCGCCTGGTGAATAAATGAAGAAGCACCGTACACTTGTAATCAAAGTAAGAATAGTTTGTGTAAGAAACAAACAATGAGACAGAAACACCACAGAAAGCATCACAACCAAATTGACGCCCCATCATAGGAAGATCGTTCAAATGAGACGAAATTCAAAAAAAACCTATAATTAGGCGCCGCAATGAAAGGGGGCGGGGCGACCAAATTTTTCTCCCTTTTCATAAGTCAATCTTTGAAGTCTTCTACCGGGCGTTAGAAACTCATTATTTTTTGGGTTAAAACTTGTCCCCACGTAATCGACTGCAAAAAATCGAATGGAACCATTAGTTTTTCAATATTTTCATTATTTTGATTCGAAAACTTCGAAAAATAGGAGTCGGAGTGACAAAATGGGCTAAAATTGTTAGATGAAGGGGGGATGCCCCCAAATTTGTTGATGGATTCTGGTAGATTATGAACTGGGGGATTGGATTTTGAAATAAAATAGAATTTCTACTGTCGCCG</canonical>
            <polymorphic>TTTGCATATTCAACAAGTGATCCATTATGCCGAAATTTAAATTGGTTCAAGTATAGAAGAAAAGTAAGAAGAGAATCCAACGGATGATTAAAAAAAAGTTTGAAACAGAAATACATACAACTGAAGCTTTTAATCGAGAAGCCGATCTTTGAACTAGATCTTTGAACTAACCTAGATCCCTGCAATGTTGTGACTATTGTATATAATCAAATTTTGCAGAACTCAGCAAAACTTTCCTCACCGATACTCTCTAAAAGTGTACATAGATTCTGGAATTCACTACCGATGGAACTGTTCCCGGCTAAGCCTTTGCCAAAGGCATTTCAATACAGACTGTCAAACTGTGATCTTTAAGATTATTCAAACCGCAACAGTTACTAACCACTAATGTTTCCCAACATACCCTGTTATCTAATAGCAGCAATCTAGTTTGTCTAATATTTTGTTGAATTGTAATCTCGAATATTCTATTCTACACGTGTCGGAGGTATCATGCCGCYTGGTGAATAAATGAAGAAGCACCGTACACTTGTAATCAAAGTAAGAATAGTTTGTGTAAGAAACAAACAATGAGACAGAAACACCACAGAAAGCATCACAACCAAATTGACGCCCCATCATAGGAAGATCGTTCAAATGAGACGAAATTCAAAAAAAACCTATAATTAGGCGCCGCAATGAAAGGGGGCGGGGCGACCAAATTTTTCTCCCTTTTCATAAGTCAATCTTTGAAGTCTTCTACCGGGCGTTAGAAACTCATTATTTTTTGGGTTAAAACTTGTCCCCACGTAATCGACTGCAAAAAATCGAATGGAACCATTAGTTTTTCAATATTTTCATTATTTTGATTCGAAAACTTCGAAAAATAGGAGTCGGAGTGACAAAATGGGCTAAAATTGTTAGATGAAGGGGGGATGCCCCCAAATTTGTTGATGGATTCTGGTAGATTATGAACTGGGGGATTGGATTTTGAAATAAAATAGAATTTCTACTGTCGCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>298 257 243 202</canonical_bands>
                <polymorphic_bands>445 298 257</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGACTGTCAAACTGTGATCTT</pcr_primer_p1>
		<pcr_primer_p2>TGTCTCATTGTTTGTTTCTTACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAGACTGTCAAACTGTGATCTTTAAGATTATTCAAACCGCAACAGTTACTAACCACTAATGTTTCCCAACATACCCTGTTATCTAATAGCAGCAATCTAGTTTGTCTAATATTTTGTTGAATTGTAATCTCGAATATTCTATTCTACACGTGTCGGAGGTATCATGCCGCCTGGTGAATAAATGAAGAAGCACCGTACACTTGTAATCAAAGTAAGAATAGTTTGTGTAAGAAACAAACAATGAGACA</canonical_amplicon>
		<polymorphic_amplicon>ACAGACTGTCAAACTGTGATCTTTAAGATTATTCAAACCGCAACAGTTACTAACCACTAATGTTTCCCAACATACCCTGTTATCTAATAGCAGCAATCTAGTTTGTCTAATATTTTGTTGAATTGTAATCTCGAATATTCTATTCTACACGTGTCGGAGGTATCATGCCGCYTGGTGAATAAATGAAGAAGCACCGTACACTTGTAATCAAAGTAAGAATAGTTTGTGTAAGAAACAAACAATGAGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1636</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>125693</contig_pos>
        <strand>+</strand>
        <context>TGCAGAACTC[A/T]GCAAAACTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATCCCTGCAATGTTGTGACTATTGTATATAATCAAATTTTGCAGAACTC</left_flank>
        <right_flank>GCAAAACTTTCCTCACCGATACTCTCTAAAAGTGTACATAGATTCTGGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTAATCACAAAAACATTTGCACCGGGCTCTGTCAAAATGATACTTCTTGACATCTGGAGTAGAAACTCGATCGACTTCATCTGTCCATTGCTTTTGTCAGCAGAAATTTTGTCAGTCTTTCTCAATACATGGATTTTGAAAAATGACTCCTAATTATTATTCATTAAATATGATACATAAATAAATTTACTCACAACTTCACAGAGTTCAGATTCTGGATCATTAGAGGGGACAGTTGGTGATTGTTGTCCTTTACCATCAAAGTGCTTTGGATTTTGCATATTCAACAAGTGATCCATTATGCCGAAATTTAAATTGGTTCAAGTATAGAAGAAAAGTAAGAAGAGAATCCAACGGATGATTAAAAAAAAGTTTGAAACAGAAATACATACAACTGAAGCTTTTAATCGAGAAGCCGATCTTTGAACTAGATCTTTGAACTAACCTAGATCCCTGCAATGTTGTGACTATTGTATATAATCAAATTTTGCAGAACTCAGCAAAACTTTCCTCACCGATACTCTCTAAAAGTGTACATAGATTCTGGAATTCACTACCGATGGAACTGTTCCCGGCTAAGCCTTTGCCAAAGGCATTTCAATACAGACTGTCAAACTGTGATCTTTAAGATTATTCAAACCGCAACAGTTACTAACCACTAATGTTTCCCAACATACCCTGTTATCTAATAGCAGCAATCTAGTTTGTCTAATATTTTGTTGAATTGTAATCTCGAATATTCTATTCTACACGTGTCGGAGGTATCATGCCGCCTGGTGAATAAATGAAGAAGCACCGTACACTTGTAATCAAAGTAAGAATAGTTTGTGTAAGAAACAAACAATGAGACAGAAACACCACAGAAAGCATCACAACCAAATTGACGCCCCATCATAGGAAGATCGTTCAAATGAGACGAAATTCAAAAAAAACCTATAATTAGGCGCCGCAATGAAAGGGGGCGGGGCGACCAAATTTTTCTCCCTTTTCATAAGTCAA</canonical>
            <polymorphic>TGTAATCACAAAAACATTTGCACCGGGCTCTGTCAAAATGATACTTCTTGACATCTGGAGTAGAAACTCGATCGACTTCATCTGTCCATTGCTTTTGTCAGCAGAAATTTTGTCAGTCTTTCTCAATACATGGATTTTGAAAAATGACTCCTAATTATTATTCATTAAATATGATACATAAATAAATTTACTCACAACTTCACAGAGTTCAGATTCTGGATCATTAGAGGGGACAGTTGGTGATTGTTGTCCTTTACCATCAAAGTGCTTTGGATTTTGCATATTCAACAAGTGATCCATTATGCCGAAATTTAAATTGGTTCAAGTATAGAAGAAAAGTAAGAAGAGAATCCAACGGATGATTAAAAAAAAGTTTGAAACAGAAATACATACAACTGAAGCTTTTAATCGAGAAGCCGATCTTTGAACTAGATCTTTGAACTAACCTAGATCCCTGCAATGTTGTGACTATTGTATATAATCAAATTTTGCAGAACTCWGCAAAACTTTCCTCACCGATACTCTCTAAAAGTGTACATAGATTCTGGAATTCACTACCGATGGAACTGTTCCCGGCTAAGCCTTTGCCAAAGGCATTTCAATACAGACTGTCAAACTGTGATCTTTAAGATTATTCAAACCGCAACAGTTACTAACCACTAATGTTTCCCAACATACCCTGTTATCTAATAGCAGCAATCTAGTTTGTCTAATATTTTGTTGAATTGTAATCTCGAATATTCTATTCTACACGTGTCGGAGGTATCATGCCGCCTGGTGAATAAATGAAGAAGCACCGTACACTTGTAATCAAAGTAAGAATAGTTTGTGTAAGAAACAAACAATGAGACAGAAACACCACAGAAAGCATCACAACCAAATTGACGCCCCATCATAGGAAGATCGTTCAAATGAGACGAAATTCAAAAAAAACCTATAATTAGGCGCCGCAATGAAAGGGGGCGGGGCGACCAAATTTTTCTCCCTTTTCATAAGTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>497 423 80</canonical_bands>
                <polymorphic_bands>577 423</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAATACATACAACTGAAGCTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCTTAAAGATCACAGTTTGACAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAATACATACAACTGAAGCTTTTAATCGAGAAGCCGATCTTTGAACTAGATCTTTGAACTAACCTAGATCCCTGCAATGTTGTGACTATTGTATATAATCAAATTTTGCAGAACTCAGCAAAACTTTCCTCACCGATACTCTCTAAAAGTGTACATAGATTCTGGAATTCACTACCGATGGAACTGTTCCCGGCTAAGCCTTTGCCAAAGGCATTTCAATACAGACTGTCAAACTGTGATCTTTAAGA</canonical_amplicon>
		<polymorphic_amplicon>AGAAATACATACAACTGAAGCTTTTAATCGAGAAGCCGATCTTTGAACTAGATCTTTGAACTAACCTAGATCCCTGCAATGTTGTGACTATTGTATATAATCAAATTTTGCAGAACTCWGCAAAACTTTCCTCACCGATACTCTCTAAAAGTGTACATAGATTCTGGAATTCACTACCGATGGAACTGTTCCCGGCTAAGCCTTTGCCAAAGGCATTTCAATACAGACTGTCAAACTGTGATCTTTAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1637</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>125636</contig_pos>
        <strand>+</strand>
        <context>ATCTTTRAAY[C/T]AACCTAGATC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAACTGAAGCTTTTAATCGAGAAGCCGATCTTTGAACTAGATCTTTGAAC</left_flank>
        <right_flank>AACCTAGATCCCTGCAATGTTGTGACTATTGTATATAATCAAATTTTGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGATACAATTGTCTCCTTCTTGGTGAAGGGGTTGTGAGATTTCAACAGCGCGACAATGTAATCACAAAAACATTTGCACCGGGCTCTGTCAAAATGATACTTCTTGACATCTGGAGTAGAAACTCGATCGACTTCATCTGTCCATTGCTTTTGTCAGCAGAAATTTTGTCAGTCTTTCTCAATACATGGATTTTGAAAAATGACTCCTAATTATTATTCATTAAATATGATACATAAATAAATTTACTCACAACTTCACAGAGTTCAGATTCTGGATCATTAGAGGGGACAGTTGGTGATTGTTGTCCTTTACCATCAAAGTGCTTTGGATTTTGCATATTCAACAAGTGATCCATTATGCCGAAATTTAAATTGGTTCAAGTATAGAAGAAAAGTAAGAAGAGAATCCAACGGATGATTAAAAAAAAGTTTGAAACAGAAATACATACAACTGAAGCTTTTAATCGAGAAGCCGATCTTTGAACTAGATCTTTGAACTAACCTAGATCCCTGCAATGTTGTGACTATTGTATATAATCAAATTTTGCAGAACTCAGCAAAACTTTCCTCACCGATACTCTCTAAAAGTGTACATAGATTCTGGAATTCACTACCGATGGAACTGTTCCCGGCTAAGCCTTTGCCAAAGGCATTTCAATACAGACTGTCAAACTGTGATCTTTAAGATTATTCAAACCGCAACAGTTACTAACCACTAATGTTTCCCAACATACCCTGTTATCTAATAGCAGCAATCTAGTTTGTCTAATATTTTGTTGAATTGTAATCTCGAATATTCTATTCTACACGTGTCGGAGGTATCATGCCGCCTGGTGAATAAATGAAGAAGCACCGTACACTTGTAATCAAAGTAAGAATAGTTTGTGTAAGAAACAAACAATGAGACAGAAACACCACAGAAAGCATCACAACCAAATTGACGCCCCATCATAGGAAGATCGTTCAAATGAGACGAAATTCAAAAAAAACCTATAATTA</canonical>
            <polymorphic>TCGATACAATTGTCTCCTTCTTGGTGAAGGGGTTGTGAGATTTCAACAGCGCGACAATGTAATCACAAAAACATTTGCACCGGGCTCTGTCAAAATGATACTTCTTGACATCTGGAGTAGAAACTCGATCGACTTCATCTGTCCATTGCTTTTGTCAGCAGAAATTTTGTCAGTCTTTCTCAATACATGGATTTTGAAAAATGACTCCTAATTATTATTCATTAAATATGATACATAAATAAATTTACTCACAACTTCACAGAGTTCAGATTCTGGATCATTAGAGGGGACAGTTGGTGATTGTTGTCCTTTACCATCAAAGTGCTTTGGATTTTGCATATTCAACAAGTGATCCATTATGCCGAAATTTAAATTGGTTCAAGTATAGAAGAAAAGTAAGAAGAGAATCCAACGGATGATTAAAAAAAAGTTTGAAACAGAAATACATACAACTGAAGCTTTTAATCGAGAAGCCGATCTTTGAACTAGATCTTTGAACYAACCTAGATCCCTGCAATGTTGTGACTATTGTATATAATCAAATTTTGCAGAACTCAGCAAAACTTTCCTCACCGATACTCTCTAAAAGTGTACATAGATTCTGGAATTCACTACCGATGGAACTGTTCCCGGCTAAGCCTTTGCCAAAGGCATTTCAATACAGACTGTCAAACTGTGATCTTTAAGATTATTCAAACCGCAACAGTTACTAACCACTAATGTTTCCCAACATACCCTGTTATCTAATAGCAGCAATCTAGTTTGTCTAATATTTTGTTGAATTGTAATCTCGAATATTCTATTCTACACGTGTCGGAGGTATCATGCCGCCTGGTGAATAAATGAAGAAGCACCGTACACTTGTAATCAAAGTAAGAATAGTTTGTGTAAGAAACAAACAATGAGACAGAAACACCACAGAAAGCATCACAACCAAATTGACGCCCCATCATAGGAAGATCGTTCAAATGAGACGAAATTCAAAAAAAACCTATAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATATTCAACAAGTGATCCATTA</pcr_primer_p1>
		<pcr_primer_p2>TAGAGAGTATCGGTGAGGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATATTCAACAAGTGATCCATTATGCCGAAATTTAAATTGGTTCAAGTATAGAAGAAAAGTAAGAAGAGAATCCAACGGATGATTAAAAAAAAGTTTGAAACAGAAATACATACAACTGAAGCTTTTAATCGAGAAGCCGATCTTTGAACTAGATCTTTGAACTAACCTAGATCCCTGCAATGTTGTGACTATTGTATATAATCAAATTTTGCAGAACTCAGCAAAACTTTCCTCACCGATACTCTCTA</canonical_amplicon>
		<polymorphic_amplicon>CATATTCAACAAGTGATCCATTATGCCGAAATTTAAATTGGTTCAAGTATAGAAGAAAAGTAAGAAGAGAATCCAACGGATGATTAAAAAAAAGTTTGAAACAGAAATACATACAACTGAAGCTTTTAATCGAGAAGCCGATCTTTGAACTAGATCTTTGAACYAACCTAGATCCCTGCAATGTTGTGACTATTGTATATAATCAAATTTTGCAGAACTCAGCAAAACTTTCCTCACCGATACTCTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1638</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>125635</contig_pos>
        <strand>+</strand>
        <context>GATCTTTRAA[C/T]YAACCTAGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAACTGAAGCTTTTAATCGAGAAGCCGATCTTTGAACTAGATCTTTGAA</left_flank>
        <right_flank>TAACCTAGATCCCTGCAATGTTGTGACTATTGTATATAATCAAATTTTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGATACAATTGTCTCCTTCTTGGTGAAGGGGTTGTGAGATTTCAACAGCGCGACAATGTAATCACAAAAACATTTGCACCGGGCTCTGTCAAAATGATACTTCTTGACATCTGGAGTAGAAACTCGATCGACTTCATCTGTCCATTGCTTTTGTCAGCAGAAATTTTGTCAGTCTTTCTCAATACATGGATTTTGAAAAATGACTCCTAATTATTATTCATTAAATATGATACATAAATAAATTTACTCACAACTTCACAGAGTTCAGATTCTGGATCATTAGAGGGGACAGTTGGTGATTGTTGTCCTTTACCATCAAAGTGCTTTGGATTTTGCATATTCAACAAGTGATCCATTATGCCGAAATTTAAATTGGTTCAAGTATAGAAGAAAAGTAAGAAGAGAATCCAACGGATGATTAAAAAAAAGTTTGAAACAGAAATACATACAACTGAAGCTTTTAATCGAGAAGCCGATCTTTGAACTAGATCTTTGAACTAACCTAGATCCCTGCAATGTTGTGACTATTGTATATAATCAAATTTTGCAGAACTCAGCAAAACTTTCCTCACCGATACTCTCTAAAAGTGTACATAGATTCTGGAATTCACTACCGATGGAACTGTTCCCGGCTAAGCCTTTGCCAAAGGCATTTCAATACAGACTGTCAAACTGTGATCTTTAAGATTATTCAAACCGCAACAGTTACTAACCACTAATGTTTCCCAACATACCCTGTTATCTAATAGCAGCAATCTAGTTTGTCTAATATTTTGTTGAATTGTAATCTCGAATATTCTATTCTACACGTGTCGGAGGTATCATGCCGCCTGGTGAATAAATGAAGAAGCACCGTACACTTGTAATCAAAGTAAGAATAGTTTGTGTAAGAAACAAACAATGAGACAGAAACACCACAGAAAGCATCACAACCAAATTGACGCCCCATCATAGGAAGATCGTTCAAATGAGACGAAATTCAAAAAAAACCTATAATT</canonical>
            <polymorphic>ATCGATACAATTGTCTCCTTCTTGGTGAAGGGGTTGTGAGATTTCAACAGCGCGACAATGTAATCACAAAAACATTTGCACCGGGCTCTGTCAAAATGATACTTCTTGACATCTGGAGTAGAAACTCGATCGACTTCATCTGTCCATTGCTTTTGTCAGCAGAAATTTTGTCAGTCTTTCTCAATACATGGATTTTGAAAAATGACTCCTAATTATTATTCATTAAATATGATACATAAATAAATTTACTCACAACTTCACAGAGTTCAGATTCTGGATCATTAGAGGGGACAGTTGGTGATTGTTGTCCTTTACCATCAAAGTGCTTTGGATTTTGCATATTCAACAAGTGATCCATTATGCCGAAATTTAAATTGGTTCAAGTATAGAAGAAAAGTAAGAAGAGAATCCAACGGATGATTAAAAAAAAGTTTGAAACAGAAATACATACAACTGAAGCTTTTAATCGAGAAGCCGATCTTTGAACTAGATCTTTGAAYTAACCTAGATCCCTGCAATGTTGTGACTATTGTATATAATCAAATTTTGCAGAACTCAGCAAAACTTTCCTCACCGATACTCTCTAAAAGTGTACATAGATTCTGGAATTCACTACCGATGGAACTGTTCCCGGCTAAGCCTTTGCCAAAGGCATTTCAATACAGACTGTCAAACTGTGATCTTTAAGATTATTCAAACCGCAACAGTTACTAACCACTAATGTTTCCCAACATACCCTGTTATCTAATAGCAGCAATCTAGTTTGTCTAATATTTTGTTGAATTGTAATCTCGAATATTCTATTCTACACGTGTCGGAGGTATCATGCCGCCTGGTGAATAAATGAAGAAGCACCGTACACTTGTAATCAAAGTAAGAATAGTTTGTGTAAGAAACAAACAATGAGACAGAAACACCACAGAAAGCATCACAACCAAATTGACGCCCCATCATAGGAAGATCGTTCAAATGAGACGAAATTCAAAAAAAACCTATAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATATTCAACAAGTGATCCATTA</pcr_primer_p1>
		<pcr_primer_p2>TAGAGAGTATCGGTGAGGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATATTCAACAAGTGATCCATTATGCCGAAATTTAAATTGGTTCAAGTATAGAAGAAAAGTAAGAAGAGAATCCAACGGATGATTAAAAAAAAGTTTGAAACAGAAATACATACAACTGAAGCTTTTAATCGAGAAGCCGATCTTTGAACTAGATCTTTGAACTAACCTAGATCCCTGCAATGTTGTGACTATTGTATATAATCAAATTTTGCAGAACTCAGCAAAACTTTCCTCACCGATACTCTCTA</canonical_amplicon>
		<polymorphic_amplicon>CATATTCAACAAGTGATCCATTATGCCGAAATTTAAATTGGTTCAAGTATAGAAGAAAAGTAAGAAGAGAATCCAACGGATGATTAAAAAAAAGTTTGAAACAGAAATACATACAACTGAAGCTTTTAATCGAGAAGCCGATCTTTGAACTAGATCTTTGAAYTAACCTAGATCCCTGCAATGTTGTGACTATTGTATATAATCAAATTTTGCAGAACTCAGCAAAACTTTCCTCACCGATACTCTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1639</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>125632</contig_pos>
        <strand>+</strand>
        <context>CTAGATCTTT[A/G]AAYYAACCTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATACAACTGAAGCTTTTAATCGAGAAGCCGATCTTTGAACTAGATCTTT</left_flank>
        <right_flank>AACTAACCTAGATCCCTGCAATGTTGTGACTATTGTATATAATCAAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATCGATACAATTGTCTCCTTCTTGGTGAAGGGGTTGTGAGATTTCAACAGCGCGACAATGTAATCACAAAAACATTTGCACCGGGCTCTGTCAAAATGATACTTCTTGACATCTGGAGTAGAAACTCGATCGACTTCATCTGTCCATTGCTTTTGTCAGCAGAAATTTTGTCAGTCTTTCTCAATACATGGATTTTGAAAAATGACTCCTAATTATTATTCATTAAATATGATACATAAATAAATTTACTCACAACTTCACAGAGTTCAGATTCTGGATCATTAGAGGGGACAGTTGGTGATTGTTGTCCTTTACCATCAAAGTGCTTTGGATTTTGCATATTCAACAAGTGATCCATTATGCCGAAATTTAAATTGGTTCAAGTATAGAAGAAAAGTAAGAAGAGAATCCAACGGATGATTAAAAAAAAGTTTGAAACAGAAATACATACAACTGAAGCTTTTAATCGAGAAGCCGATCTTTGAACTAGATCTTTGAACTAACCTAGATCCCTGCAATGTTGTGACTATTGTATATAATCAAATTTTGCAGAACTCAGCAAAACTTTCCTCACCGATACTCTCTAAAAGTGTACATAGATTCTGGAATTCACTACCGATGGAACTGTTCCCGGCTAAGCCTTTGCCAAAGGCATTTCAATACAGACTGTCAAACTGTGATCTTTAAGATTATTCAAACCGCAACAGTTACTAACCACTAATGTTTCCCAACATACCCTGTTATCTAATAGCAGCAATCTAGTTTGTCTAATATTTTGTTGAATTGTAATCTCGAATATTCTATTCTACACGTGTCGGAGGTATCATGCCGCCTGGTGAATAAATGAAGAAGCACCGTACACTTGTAATCAAAGTAAGAATAGTTTGTGTAAGAAACAAACAATGAGACAGAAACACCACAGAAAGCATCACAACCAAATTGACGCCCCATCATAGGAAGATCGTTCAAATGAGACGAAATTCAAAAAAAACCTATA</canonical>
            <polymorphic>GAAATCGATACAATTGTCTCCTTCTTGGTGAAGGGGTTGTGAGATTTCAACAGCGCGACAATGTAATCACAAAAACATTTGCACCGGGCTCTGTCAAAATGATACTTCTTGACATCTGGAGTAGAAACTCGATCGACTTCATCTGTCCATTGCTTTTGTCAGCAGAAATTTTGTCAGTCTTTCTCAATACATGGATTTTGAAAAATGACTCCTAATTATTATTCATTAAATATGATACATAAATAAATTTACTCACAACTTCACAGAGTTCAGATTCTGGATCATTAGAGGGGACAGTTGGTGATTGTTGTCCTTTACCATCAAAGTGCTTTGGATTTTGCATATTCAACAAGTGATCCATTATGCCGAAATTTAAATTGGTTCAAGTATAGAAGAAAAGTAAGAAGAGAATCCAACGGATGATTAAAAAAAAGTTTGAAACAGAAATACATACAACTGAAGCTTTTAATCGAGAAGCCGATCTTTGAACTAGATCTTTRAACTAACCTAGATCCCTGCAATGTTGTGACTATTGTATATAATCAAATTTTGCAGAACTCAGCAAAACTTTCCTCACCGATACTCTCTAAAAGTGTACATAGATTCTGGAATTCACTACCGATGGAACTGTTCCCGGCTAAGCCTTTGCCAAAGGCATTTCAATACAGACTGTCAAACTGTGATCTTTAAGATTATTCAAACCGCAACAGTTACTAACCACTAATGTTTCCCAACATACCCTGTTATCTAATAGCAGCAATCTAGTTTGTCTAATATTTTGTTGAATTGTAATCTCGAATATTCTATTCTACACGTGTCGGAGGTATCATGCCGCCTGGTGAATAAATGAAGAAGCACCGTACACTTGTAATCAAAGTAAGAATAGTTTGTGTAAGAAACAAACAATGAGACAGAAACACCACAGAAAGCATCACAACCAAATTGACGCCCCATCATAGGAAGATCGTTCAAATGAGACGAAATTCAAAAAAAACCTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATATTCAACAAGTGATCCATTA</pcr_primer_p1>
		<pcr_primer_p2>TAGAGAGTATCGGTGAGGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATATTCAACAAGTGATCCATTATGCCGAAATTTAAATTGGTTCAAGTATAGAAGAAAAGTAAGAAGAGAATCCAACGGATGATTAAAAAAAAGTTTGAAACAGAAATACATACAACTGAAGCTTTTAATCGAGAAGCCGATCTTTGAACTAGATCTTTGAACTAACCTAGATCCCTGCAATGTTGTGACTATTGTATATAATCAAATTTTGCAGAACTCAGCAAAACTTTCCTCACCGATACTCTCTA</canonical_amplicon>
		<polymorphic_amplicon>CATATTCAACAAGTGATCCATTATGCCGAAATTTAAATTGGTTCAAGTATAGAAGAAAAGTAAGAAGAGAATCCAACGGATGATTAAAAAAAAGTTTGAAACAGAAATACATACAACTGAAGCTTTTAATCGAGAAGCCGATCTTTGAACTAGATCTTTRAACTAACCTAGATCCCTGCAATGTTGTGACTATTGTATATAATCAAATTTTGCAGAACTCAGCAAAACTTTCCTCACCGATACTCTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1641</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>142871</contig_pos>
        <strand>+</strand>
        <context>AGCTTGTGTT[C/T]CCATTTATCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCATTTTCATCTAGACAAATGTGATGAAATTTAACTGTGAAGCTTGTGTT</left_flank>
        <right_flank>CCATTTATCAAGTTTTTCAAATCTGTTGATACTCGAGAAAGTTTGAACCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTCTCATATTCAAAATTCCCATCTAATGAACTGAACGAAATTTCTAAGTATTTGAACAAATGAAATGTGCTCAAAACTTGTTTTGCGAAGTCCATAGAATTCTTCCTATCTGTTTCTTGATTTGCTTTCGTACTTTTGATGGATAATTTTTCGCAGCTCATATTTTTCAGAAAATCATTTGGTAACCTTGAAAGTAAGTCAAGACGGCTGGGATGCATGAGAAGTTGTCCCACTTTGAAATTTGCATCTGTCTTGAATATAGAAACAATATTCTGGAAAACGAATAGGAAAGATTGTGCGACGTTTTCATAATAGCCATCAATATGAAACTCCTTTCCATAGTGACATTTATTGAGGAATCGTTTGGTCCAGTATGGTTTTCTTGAAGCATCACAAAATGTCCAATTGATCAAATATCGATCAGATGTTTCTAATCTCATTGATATTGCATTTTCATCTAGACAAATGTGATGAAATTTAACTGTGAAGCTTGTGTTTCCATTTATCAAGTTTTTCAAATCTGTTGATACTCGAGAAAGTTTGAACCTGGAAAAAAGTTTACAAATAAATAGCCTTAATACTGAATGAAAACTTACAGATCCCATGGCTTCAGATACTTGAATATTTCCCTATGAACCGTGTCTGGTAGGTTAGCAAGATCAGGAGAATTTCCTCGATTTTTTACTAAATATTGACCCATACTCTCTGGGGGGAGAATGTGAAGAGACTGTACTCTTTTTATGAATGACATGTTATCATTTGTTGACATTTCAATGGGCGGAATTAGATGATAACTGATATCAAATGAATTCCAATTCATCATTAAAGGAAGTCAGGTAAATTAAGGTGTGTCTTCTAGAAACTGAATAGTTTTCTGCAAGCGAAAGTCGTTCATGACTTCTAATACTAGATGAATATTGTATTATTCCGCTTTTAAAAAATCGGAGCTGTGGAAGAGAAACGGAAAGAGACGACATTTTATTCTCTTTTTTGTCACA</canonical>
            <polymorphic>CCTTCTCATATTCAAAATTCCCATCTAATGAACTGAACGAAATTTCTAAGTATTTGAACAAATGAAATGTGCTCAAAACTTGTTTTGCGAAGTCCATAGAATTCTTCCTATCTGTTTCTTGATTTGCTTTCGTACTTTTGATGGATAATTTTTCGCAGCTCATATTTTTCAGAAAATCATTTGGTAACCTTGAAAGTAAGTCAAGACGGCTGGGATGCATGAGAAGTTGTCCCACTTTGAAATTTGCATCTGTCTTGAATATAGAAACAATATTCTGGAAAACGAATAGGAAAGATTGTGCGACGTTTTCATAATAGCCATCAATATGAAACTCCTTTCCATAGTGACATTTATTGAGGAATCGTTTGGTCCAGTATGGTTTTCTTGAAGCATCACAAAATGTCCAATTGATCAAATATCGATCAGATGTTTCTAATCTCATTGATATTGCATTTTCATCTAGACAAATGTGATGAAATTTAACTGTGAAGCTTGTGTTYCCATTTATCAAGTTTTTCAAATCTGTTGATACTCGAGAAAGTTTGAACCTGGAAAAAAGTTTACAAATAAATAGCCTTAATACTGAATGAAAACTTACAGATCCCATGGCTTCAGATACTTGAATATTTCCCTATGAACCGTGTCTGGTAGGTTAGCAAGATCAGGAGAATTTCCTCGATTTTTTACTAAATATTGACCCATACTCTCTGGGGGGAGAATGTGAAGAGACTGTACTCTTTTTATGAATGACATGTTATCATTTGTTGACATTTCAATGGGCGGAATTAGATGATAACTGATATCAAATGAATTCCAATTCATCATTAAAGGAAGTCAGGTAAATTAAGGTGTGTCTTCTAGAAACTGAATAGTTTTCTGCAAGCGAAAGTCGTTCATGACTTCTAATACTAGATGAATATTGTATTATTCCGCTTTTAAAAAATCGGAGCTGTGGAAGAGAAACGGAAAGAGACGACATTTTATTCTCTTTTTTGTCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGTCCAATTGATCAAATATC</pcr_primer_p1>
		<pcr_primer_p2>GGTTCATAGGGAAATATTCAAGT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAATGTCCAATTGATCAAATATCGATCAGATGTTTCTAATCTCATTGATATTGCATTTTCATCTAGACAAATGTGATGAAATTTAACTGTGAAGCTTGTGTTTCCATTTATCAAGTTTTTCAAATCTGTTGATACTCGAGAAAGTTTGAACCTGGAAAAAAGTTTACAAATAAATAGCCTTAATACTGAATGAAAACTTACAGATCCCATGGCTTCAGATACTTGAATATTTCCCTATGAACC</canonical_amplicon>
		<polymorphic_amplicon>AAATGTCCAATTGATCAAATATCGATCAGATGTTTCTAATCTCATTGATATTGCATTTTCATCTAGACAAATGTGATGAAATTTAACTGTGAAGCTTGTGTTYCCATTTATCAAGTTTTTCAAATCTGTTGATACTCGAGAAAGTTTGAACCTGGAAAAAAGTTTACAAATAAATAGCCTTAATACTGAATGAAAACTTACAGATCCCATGGCTTCAGATACTTGAATATTTCCCTATGAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1642</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>177081</contig_pos>
        <strand>+</strand>
        <context>CCTCTCTTCC[C/T]ATGCCTCATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAAATCTTCTAACTTGTTACAAAAAGTTCAAACTTTGCTCCTCTCTTCC</left_flank>
        <right_flank>ATGCCTCATCTCTTCTTCTTCTTGCACTATACTATGTTGCTCCAAAATGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCCATTCTTTTAACTTTGACCTAATTTATCTGGGTTCATGTTAGAAAAACAAAAAAAATTGCCAACTGATAAAATGTTTATCATAATTTCAGCAACATCCCATCAGTTGACAGATTTTTGAAATCTTGCATAAGAATTGAGATAATTGAGCTCAAACACAACAGTGTGGGGGCCCTTCTATTACTGGTTTTTAAATAGTTGTTTTTTCCCGAAGCTGATCTGTAGACCGTCTATTAAATTTTGAAATATGCGTTGCTTAGTTGTTCCTCATTTTTAACCTCACTATCAGATTTAAAAAATTGAAAATCAATTATTCTAGAATCAGAATTTTACTGGCGCATTTTCGCAAAACCATTCTCGCCTTCTCACTATATTAGTCCCATCAATCTTCGAAAATCCTAAAACCCATCTATCTTATATTAGTACATGTATGTAGTACACATCCTCGGGAAATCTTCTAACTTGTTACAAAAAGTTCAAACTTTGCTCCTCTCTTCCCATGCCTCATCTCTTCTTCTTCTTGCACTATACTATGTTGCTCCAAAATGTCTCCCAAATTGACACGATATTAGCATAGTTTCCTTCTTTTCCTTCTCGTCTCATATCCCCCGTTCCTTTTTATCCTTTTTCTTCTTTTTTCTGCCCTTTTTCACCCGAATTTGTTCTCCTGCCATTTTTGATGAATGTGTTGTATGGACACGTGTTGCGTAACACCTCGGTCCCCTCTTATCAATCCCGATTCAGTCGGCATCTTTCTTTTAGACCCCCATCCTTGTACTCATTAGTCGGTTTTCTTCTAGTTCCCTCAAGGGAGAATAAACGGGTCATCATTGAGTGTCAAGATACGAATCTGTGATTATTAATCGCATGTACTTACACTTGTTCTTTTTTGATATTTTTACGATGGTCCGTTTTTGCGCGAAAGACACTTTTACAGTACGATCGGTACTACCGAAAGGGAAGGTGTGGTAAATCAACTACACACAGAGGCCAACTGTT</canonical>
            <polymorphic>CCCCATTCTTTTAACTTTGACCTAATTTATCTGGGTTCATGTTAGAAAAACAAAAAAAATTGCCAACTGATAAAATGTTTATCATAATTTCAGCAACATCCCATCAGTTGACAGATTTTTGAAATCTTGCATAAGAATTGAGATAATTGAGCTCAAACACAACAGTGTGGGGGCCCTTCTATTACTGGTTTTTAAATAGTTGTTTTTTCCCGAAGCTGATCTGTAGACCGTCTATTAAATTTTGAAATATGCGTTGCTTAGTTGTTCCTCATTTTTAACCTCACTATCAGATTTAAAAAATTGAAAATCAATTATTCTAGAATCAGAATTTTACTGGCGCATTTTCGCAAAACCATTCTCGCCTTCTCACTATATTAGTCCCATCAATCTTCGAAAATCCTAAAACCCATCTATCTTATATTAGTACATGTATGTAGTACACATCCTCGGGAAATCTTCTAACTTGTTACAAAAAGTTCAAACTTTGCTCCTCTCTTCCYATGCCTCATCTCTTCTTCTTCTTGCACTATACTATGTTGCTCCAAAATGTCTCCCAAATTGACACGATATTAGCATAGTTTCCTTCTTTTCCTTCTCGTCTCATATCCCCCGTTCCTTTTTATCCTTTTTCTTCTTTTTTCTGCCCTTTTTCACCCGAATTTGTTCTCCTGCCATTTTTGATGAATGTGTTGTATGGACACGTGTTGCGTAACACCTCGGTCCCCTCTTATCAATCCCGATTCAGTCGGCATCTTTCTTTTAGACCCCCATCCTTGTACTCATTAGTCGGTTTTCTTCTAGTTCCCTCAAGGGAGAATAAACGGGTCATCATTGAGTGTCAAGATACGAATCTGTGATTATTAATCGCATGTACTTACACTTGTTCTTTTTTGATATTTTTACGATGGTCCGTTTTTGCGCGAAAGACACTTTTACAGTACGATCGGTACTACCGAAAGGGAAGGTGTGGTAAATCAACTACACACAGAGGCCAACTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>389 368 132 73 38</canonical_bands>
                <polymorphic_bands>441 389 132 38</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGGGAAATCTTCTAACTTGT</pcr_primer_p1>
		<pcr_primer_p2>CATACAACACATTCATCAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCGGGAAATCTTCTAACTTGTTACAAAAAGTTCAAACTTTGCTCCTCTCTTCCCATGCCTCATCTCTTCTTCTTCTTGCACTATACTATGTTGCTCCAAAATGTCTCCCAAATTGACACGATATTAGCATAGTTTCCTTCTTTTCCTTCTCGTCTCATATCCCCCGTTCCTTTTTATCCTTTTTCTTCTTTTTTCTGCCCTTTTTCACCCGAATTTGTTCTCCTGCCATTTTTGATGAATGTGTTGTATG</canonical_amplicon>
		<polymorphic_amplicon>TCGGGAAATCTTCTAACTTGTTACAAAAAGTTCAAACTTTGCTCCTCTCTTCCYATGCCTCATCTCTTCTTCTTCTTGCACTATACTATGTTGCTCCAAAATGTCTCCCAAATTGACACGATATTAGCATAGTTTCCTTCTTTTCCTTCTCGTCTCATATCCCCCGTTCCTTTTTATCCTTTTTCTTCTTTTTTCTGCCCTTTTTCACCCGAATTTGTTCTCCTGCCATTTTTGATGAATGTGTTGTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1643</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>179009</contig_pos>
        <strand>+</strand>
        <context>CCCATAAAAC[A/T]AATAAAATCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTTTTTTTTTAAACTACCATATCCCAAAAACAAAAAAATCCCATAAAAC</left_flank>
        <right_flank>AATAAAATCATATGAAGCTCTTTCCTATGTTATTTCAACTTAAAACCACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAGAGTTTTCAATGAGCTCTTGCTCTTTTTTTTGCTCTTTTTCGCGCCTAGATACATTTTCTGATGATTTGATTTCTTACTTCTTATTGGTTCTTATGATTATACTTTTGTTGAGGGCTCTTTCGGGTGCCGATAAACATCTTTTTGTGTTTTATTGATTTGTTCCTTTCTCTTTTTTTTTTTGAGATTACCTAAAATATCAAATGGAAGTTTGAAACTCTGAAGTGTTCAAAATGATCTTTCCGGAATTTGGAAACTTTGGAATATTCTGATTTCACAGTTTTCAGAATTTTGAAACGTCGGAATAATCCTATTTTAACAAATTTCAAAATTTTAAAACTTCGGAATATTCCGATTTGAAAATTTTAACAATTTTTGAAATCTCACTTTCCTACCACAAAAGTAATTTTTTCAATCCCTTCATCACTGTCAGCAGCTTCGAATTTGGTTTTTTTTTTAAACTACCATATCCCAAAAACAAAAAAATCCCATAAAACTAATAAAATCATATGAAGCTCTTTCCTATGTTATTTCAACTTAAAACCACATTGCTTCTCATCCATCAATCTCTTTAAATTATCTCTGTTGTCTCCTAACTTTTCGCAATCTTCCAACAATTTTAGTTTCCGTTAAAATTCCCTTTGTTCTTCTTCTTTTTGCTCTTCTGCTTCCCTTGAAATCATCCCGAGAAACCAGAACCAGATGTCCTTATGTTTGTTTCCGTGTGATGTTAGTTTAGGTTTTTCTTTCTTAATTTCCCCCACTAACATTTCATTTTCTAGTGGGTGATGTACAATCCGAAGAAGAAGACAATTTTCAGGAAATTCAATATAGAAGAAGTCAAAAGAAGCAGCACATTCTATTGACGATGATTTCAATGTGACACAGATTCAATTCTAGATAATAAAAGTGATGGGCAAAGAGGCATCAAATAAAAAACACTAGGGACAAGAATCCATTTGAAAAAAATCTAGAATTTCTATGGAGATAGGGATCTT</canonical>
            <polymorphic>ATTAGAGTTTTCAATGAGCTCTTGCTCTTTTTTTTGCTCTTTTTCGCGCCTAGATACATTTTCTGATGATTTGATTTCTTACTTCTTATTGGTTCTTATGATTATACTTTTGTTGAGGGCTCTTTCGGGTGCCGATAAACATCTTTTTGTGTTTTATTGATTTGTTCCTTTCTCTTTTTTTTTTTGAGATTACCTAAAATATCAAATGGAAGTTTGAAACTCTGAAGTGTTCAAAATGATCTTTCCGGAATTTGGAAACTTTGGAATATTCTGATTTCACAGTTTTCAGAATTTTGAAACGTCGGAATAATCCTATTTTAACAAATTTCAAAATTTTAAAACTTCGGAATATTCCGATTTGAAAATTTTAACAATTTTTGAAATCTCACTTTCCTACCACAAAAGTAATTTTTTCAATCCCTTCATCACTGTCAGCAGCTTCGAATTTGGTTTTTTTTTTAAACTACCATATCCCAAAAACAAAAAAATCCCATAAAACWAATAAAATCATATGAAGCTCTTTCCTATGTTATTTCAACTTAAAACCACATTGCTTCTCATCCATCAATCTCTTTAAATTATCTCTGTTGTCTCCTAACTTTTCGCAATCTTCCAACAATTTTAGTTTCCGTTAAAATTCCCTTTGTTCTTCTTCTTTTTGCTCTTCTGCTTCCCTTGAAATCATCCCGAGAAACCAGAACCAGATGTCCTTATGTTTGTTTCCGTGTGATGTTAGTTTAGGTTTTTCTTTCTTAATTTCCCCCACTAACATTTCATTTTCTAGTGGGTGATGTACAATCCGAAGAAGAAGACAATTTTCAGGAAATTCAATATAGAAGAAGTCAAAAGAAGCAGCACATTCTATTGACGATGATTTCAATGTGACACAGATTCAATTCTAGATAATAAAAGTGATGGGCAAAGAGGCATCAAATAAAAAACACTAGGGACAAGAATCCATTTGAAAAAAATCTAGAATTTCTATGGAGATAGGGATCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCACTTTCCTACCACAAAAGTA</pcr_primer_p1>
		<pcr_primer_p2>GGAAACTAAAATTGTTGGAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTCACTTTCCTACCACAAAAGTAATTTTTTCAATCCCTTCATCACTGTCAGCAGCTTCGAATTTGGTTTTTTTTTTAAACTACCATATCCCAAAAACAAAAAAATCCCATAAAACTAATAAAATCATATGAAGCTCTTTCCTATGTTATTTCAACTTAAAACCACATTGCTTCTCATCCATCAATCTCTTTAAATTATCTCTGTTGTCTCCTAACTTTTCGCAATCTTCCAACAATTTTAGTTTCC</canonical_amplicon>
		<polymorphic_amplicon>CTCACTTTCCTACCACAAAAGTAATTTTTTCAATCCCTTCATCACTGTCAGCAGCTTCGAATTTGGTTTTTTTTTTAAACTACCATATCCCAAAAACAAAAAAATCCCATAAAACWAATAAAATCATATGAAGCTCTTTCCTATGTTATTTCAACTTAAAACCACATTGCTTCTCATCCATCAATCTCTTTAAATTATCTCTGTTGTCTCCTAACTTTTCGCAATCTTCCAACAATTTTAGTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1666</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>226194</contig_pos>
        <strand>+</strand>
        <context>TATACAAGAA[A/G]GAATAGCTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGAACTGAACGAATGGTACTCGAAAAATAGGTTGAATCGTATACAAGAA</left_flank>
        <right_flank>GAATAGCTACACCAATGGAGGTGAGCGAAGAATTTACGGAAATCCTTTAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGAGAATCATACCTTGTGAGTCGTTTTACAAAGATTATTGCTTCAAGCTTACTGTTCCAGGATCAAAATATACCGGTCGGAAATTTGTTAGACGGATTCGATTTCATAGAAAAGCCTTCCGTGCCTTATAAGGAAACTCTAGTGGATGTTAGCGACAGTAGGACAAAGCTAGATCGAGATCTGAATGAAGAGGGATTAATAGTGGCACTTCTTCAAAGGAAAATCAATGGTCTTTATTTCAAAAAGAGCCACGAGGAGTATGAAGAGCCGAGAGTTTTTGAAGTGAGATTTTCAAATAATAATTAGCTCATTCTTATTCTGAATACAAGAAACAATAAACTTTGTTTCTGCACCTTTCAATTTAAAATTATTAAATTTCAAAGTTTCGAATTCCAGATTCCAGCTGGAACAATGGTTCGAGAAATGGCTGATGACGACTGGAAGATACCCGAACTGAACGAATGGTACTCGAAAAATAGGTTGAATCGTATACAAGAAAGAATAGCTACACCAATGGAGGTGAGCGAAGAATTTACGGAAATCCTTTAGCATATTTATCAGATTCAGGAACTCGATTGTAATCCAAGGATATGTTCCATGGTGACAAGGACGGATGTGATGCGAATAAGTCAGGATCAGGCAATGTAAGAAGATCGAACAGTATGTTCTTTATTTGTTGAAATTTACCATTTTCAGACATCTTCTGTCTGTGAAGCCTGAGAATCGACTGGAACTATACCACAATATCGAAAGATTCAATTTTATTGTTAACCTGAGAGTTGGAAACCGAGTGGAAGTTGATGTCGTGAGTTTTTTTTTTTTTAATTTTTTTTAACGCGGTGAAGACCGGTTTCTGTTCTAAAAGTAAGGATGAAACAGCGCCTTCAAAATTTCTAAACCAAGACGCAGACAGTAAAAGACAAAATACATGTTTTCTTGTATTCAGACAGAGTCACATGTGACTGATCGAAATTCCGATGACATGAGTAAGGCGATATC</canonical>
            <polymorphic>CCGAGAATCATACCTTGTGAGTCGTTTTACAAAGATTATTGCTTCAAGCTTACTGTTCCAGGATCAAAATATACCGGTCGGAAATTTGTTAGACGGATTCGATTTCATAGAAAAGCCTTCCGTGCCTTATAAGGAAACTCTAGTGGATGTTAGCGACAGTAGGACAAAGCTAGATCGAGATCTGAATGAAGAGGGATTAATAGTGGCACTTCTTCAAAGGAAAATCAATGGTCTTTATTTCAAAAAGAGCCACGAGGAGTATGAAGAGCCGAGAGTTTTTGAAGTGAGATTTTCAAATAATAATTAGCTCATTCTTATTCTGAATACAAGAAACAATAAACTTTGTTTCTGCACCTTTCAATTTAAAATTATTAAATTTCAAAGTTTCGAATTCCAGATTCCAGCTGGAACAATGGTTCGAGAAATGGCTGATGACGACTGGAAGATACCCGAACTGAACGAATGGTACTCGAAAAATAGGTTGAATCGTATACAAGAARGAATAGCTACACCAATGGAGGTGAGCGAAGAATTTACGGAAATCCTTTAGCATATTTATCAGATTCAGGAACTCGATTGTAATCCAAGGATATGTTCCATGGTGACAAGGACGGATGTGATGCGAATAAGTCAGGATCAGGCAATGTAAGAAGATCGAACAGTATGTTCTTTATTTGTTGAAATTTACCATTTTCAGACATCTTCTGTCTGTGAAGCCTGAGAATCGACTGGAACTATACCACAATATCGAAAGATTCAATTTTATTGTTAACCTGAGAGTTGGAAACCGAGTGGAAGTTGATGTCGTGAGTTTTTTTTTTTTTAATTTTTTTTAACGCGGTGAAGACCGGTTTCTGTTCTAAAAGTAAGGATGAAACAGCGCCTTCAAAATTTCTAAACCAAGACGCAGACAGTAAAAGACAAAATACATGTTTTCTTGTATTCAGACAGAGTCACATGTGACTGATCGAAATTCCGATGACATGAGTAAGGCGATATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAAACTTTGTTTCTGCACCT</pcr_primer_p1>
		<pcr_primer_p2>GATTACAATCGAGTTCCTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATAAACTTTGTTTCTGCACCTTTCAATTTAAAATTATTAAATTTCAAAGTTTCGAATTCCAGATTCCAGCTGGAACAATGGTTCGAGAAATGGCTGATGACGACTGGAAGATACCCGAACTGAACGAATGGTACTCGAAAAATAGGTTGAATCGTATACAAGAAAGAATAGCTACACCAATGGAGGTGAGCGAAGAATTTACGGAAATCCTTTAGCATATTTATCAGATTCAGGAACTCGATTGTAATC</canonical_amplicon>
		<polymorphic_amplicon>AATAAACTTTGTTTCTGCACCTTTCAATTTAAAATTATTAAATTTCAAAGTTTCGAATTCCAGATTCCAGCTGGAACAATGGTTCGAGAAATGGCTGATGACGACTGGAAGATACCCGAACTGAACGAATGGTACTCGAAAAATAGGTTGAATCGTATACAAGAARGAATAGCTACACCAATGGAGGTGAGCGAAGAATTTACGGAAATCCTTTAGCATATTTATCAGATTCAGGAACTCGATTGTAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1667</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>60262</contig_pos>
        <strand>+</strand>
        <context>CATCTAGATT[A/T]AAAAAAAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TACATATTTTCAAAGCCATAATTAGTAATATAAAACATTTCATCTAGATT</left_flank>
        <right_flank>AAAAAAAACTTATCTTTTCAAAACCAAATTATCACTGAAAAGTATCTAAC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAAAAAAGGAATTTGTGAATGCAAAAACCGAAAATGAATGACAAATTCAGACGTAGTGACTACTTTCAGGATGATAGTTACTCGAATTACTAGAATATAAACAATCACACATCTAGAAGAGTCTATGAATCTATGAAGTATACAAAATTGAAAATTGATACTCACCTGGAAGTTTTCACAAACTATGAAAGCGAAAAAAAATCGAAAGTGAAATTTCGGAGCAAATAAAAGCGGAATGACTTTATGAAAAATAAAGTGGGGGTGGGAGAGGTGTGGCTGGAGTATTGGGGTCTTAGAATTTCTGAACATTGAAGTGAGTAGGTGGGGTTTTACGAAATGGGACGAGAATCCAGATTTAGCTTTCTAAAAGAATTGAGTACAAAAACTATTTTGTATTTCATCCTTGTCCAAGGGTGATCGGAAATTTATCGAAATTGGAGAACTTTATACATATTTTCAAAGCCATAATTAGTAATATAAAACATTTCATCTAGATTAAAAAAAAACTTATCTTTTCAAAACCAAATTATCACTGAAAAGTATCTAACTTTTGTTCAACAAACAGAGTAAAAGTTGAACTTCTGAATTAATAATGACACTTCTTGAGTTAGACATTCTCACAGCTTGAAAAAGTCACGTGACATACTACTCTTTGCCCTTACGTTTCTAAAAAGTTAGTGAGGGAGGGAGTTAAGATCAAAAAATTGAAAAAAAATCTCCACTTTCGACATGTCCATATAATTAGACAAGGTACACACAGACATATTATAGATTGCATAAAATCAATTTTTAAAAAAAGTTTTCAAAATTTCGGAAAAAATGATTTTTCATGTGGGCACATTCTTTCCGATTTTCTCATGAAAAATTGACACCGAAGCTCAGATTTTGCGGCAAGAAAAAATTTTTTAAAAAGTGGAAAGATACTTTCGCATGTTGTACTGAACTTTTTTTTTAATTTTTAATTAATCTTCTTGAGATCTGCGAAAAAGTCTCCAAAA</canonical>
            <polymorphic>TGGAAAAAAGGAATTTGTGAATGCAAAAACCGAAAATGAATGACAAATTCAGACGTAGTGACTACTTTCAGGATGATAGTTACTCGAATTACTAGAATATAAACAATCACACATCTAGAAGAGTCTATGAATCTATGAAGTATACAAAATTGAAAATTGATACTCACCTGGAAGTTTTCACAAACTATGAAAGCGAAAAAAAATCGAAAGTGAAATTTCGGAGCAAATAAAAGCGGAATGACTTTATGAAAAATAAAGTGGGGGTGGGAGAGGTGTGGCTGGAGTATTGGGGTCTTAGAATTTCTGAACATTGAAGTGAGTAGGTGGGGTTTTACGAAATGGGACGAGAATCCAGATTTAGCTTTCTAAAAGAATTGAGTACAAAAACTATTTTGTATTTCATCCTTGTCCAAGGGTGATCGGAAATTTATCGAAATTGGAGAACTTTATACATATTTTCAAAGCCATAATTAGTAATATAAAACATTTCATCTAGATTWAAAAAAAACTTATCTTTTCAAAACCAAATTATCACTGAAAAGTATCTAACTTTTGTTCAACAAACAGAGTAAAAGTTGAACTTCTGAATTAATAATGACACTTCTTGAGTTAGACATTCTCACAGCTTGAAAAAGTCACGTGACATACTACTCTTTGCCCTTACGTTTCTAAAAAGTTAGTGAGGGAGGGAGTTAAGATCAAAAAATTGAAAAAAAATCTCCACTTTCGACATGTCCATATAATTAGACAAGGTACACACAGACATATTATAGATTGCATAAAATCAATTTTTAAAAAAAGTTTTCAAAATTTCGGAAAAAATGATTTTTCATGTGGGCACATTCTTTCCGATTTTCTCATGAAAAATTGACACCGAAGCTCAGATTTTGCGGCAAGAAAAAATTTTTTAAAAAGTGGAAAGATACTTTCGCATGTTGTACTGAACTTTTTTTTTAATTTTTAATTAATCTTCTTGAGATCTGCGAAAAAGTCTCCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>498 116 104 99 91 46 35 7 4</canonical_bands>
                <polymorphic_bands>589 116 104 99 46 35 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTATCGAAATTGGAGAACTTT</pcr_primer_p1>
		<pcr_primer_p2>AACGTAAGGGCAAAGAGTAGTAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ATTTATCGAAATTGGAGAACTTTATACATATTTTCAAAGCCATAATTAGTAATATAAAACATTTCATCTAGATTAAAAAAAAACTTATCTTTTCAAAACCAAATTATCACTGAAAAGTATCTAACTTTTGTTCAACAAACAGAGTAAAAGTTGAACTTCTGAATTAATAATGACACTTCTTGAGTTAGACATTCTCACAGCTTGAAAAAGTCACGTGACATACTACTCTTTGCCCTTACGTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTATCGAAATTGGAGAACTTTATACATATTTTCAAAGCCATAATTAGTAATATAAAACATTTCATCTAGATTWAAAAAAAACTTATCTTTTCAAAACCAAATTATCACTGAAAAGTATCTAACTTTTGTTCAACAAACAGAGTAAAAGTTGAACTTCTGAATTAATAATGACACTTCTTGAGTTAGACATTCTCACAGCTTGAAAAAGTCACGTGACATACTACTCTTTGCCCTTACGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1668</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>127874</contig_pos>
        <strand>+</strand>
        <context>CTGCATGTCT[A/G]GCATATRTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGGAGTCATCTCGTAATAGTCAGTAGCATCGCGTTCGTTCTGCATGTCT</left_flank>
        <right_flank>GCATATGTACCAATTCCGACTGAAAAAGAATAATACAGAAATCCGATAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATGTTTTAGAATGAATATTTTTAATTGGCTCCAATTTTCACCAGTCGTTTATGCGGAACAGAAAGAGAATAGGACATTTCAAGGAAACATTGTTTTGGTTTACTGGTAGTTTCAATTAGATTCATTTAGGTAGAATCAATGTTAGTTTCCATTGATACTCGAAAAAAATCGTTAAAAACTTACACGACTCGGTTTGGTTGTTGCAATAATTTCGCGATCTTGTTCTAGTCTTGCAATGATGGTGTTTTGATAGTTAATGGAATAGTCTCCGTGTTGTACGAGATATTTAATCATCTGTTTGACTTCTTCAAGCAATTTGATGCCGTCTTCAGGTGAGTTGAGGTCGAGTATCATGTGTGTGTGATGTGAGACTGAAAATTCCAATTGATTTACAGATTTATCTGTCGGGGTCATGAATACCCGAATCACATGCACATCACATCCCCCAGGAGTCATCTCGTAATAGTCAGTAGCATCGCGTTCGTTCTGCATGTCTGGCATATGTACCAATTCCGACTGAAAAAGAATAATACAGAAATCCGATAAAACCTCGAGTAATCACATCAGTCAGTTTTCTGGTCTGTGTGATAGTTTTGACCTAGAAAATATTGAAATTGTTCATGTTTAATATCTGCAGGGAGGTGTCCCCAGACGATCAGAACAAATCGCAGGTTCTGAATTCGTGCTATTTGATCAAGTGTGTTCACTACAACTAACATGAATCTGAACAATTTCCGCAATCTTACGGGAGCATTCTGTCTCGAGTAGTTCGAAAGGGCTGAATCTGACAGCGCTTTTTCAGAGAGTTTCTTGTCGATATATTTGTTTTTATCCAGAATACACTCTTTCATCTGGCCAAGGACACCCAGATCAGATAGAATATCCACCTAAATGTGAAGCAATAGATTATACATAACTATCACTACTCCACTATTTCACAACGACCATGACAATAACAACATTTCAGATTTACATATTTTGATAGATCCGAATATCT</canonical>
            <polymorphic>TTTATGTTTTAGAATGAATATTTTTAATTGGCTCCAATTTTCACCAGTCGTTTATGCGGAACAGAAAGAGAATAGGACATTTCAAGGAAACATTGTTTTGGTTTACTGGTAGTTTCAATTAGATTCATTTAGGTAGAATCAATGTTAGTTTCCATTGATACTCGAAAAAAATCGTTAAAAACTTACACGACTCGGTTTGGTTGTTGCAATAATTTCGCGATCTTGTTCTAGTCTTGCAATGATGGTGTTTTGATAGTTAATGGAATAGTCTCCGTGTTGTACGAGATATTTAATCATCTGTTTGACTTCTTCAAGCAATTTGATGCCGTCTTCAGGTGAGTTGAGGTCGAGTATCATGTGTGTGTGATGTGAGACTGAAAATTCCAATTGATTTACAGATTTATCTGTCGGGGTCATGAATACCCGAATCACATGCACATCACATCCCCCAGGAGTCATCTCGTAATAGTCAGTAGCATCGCGTTCGTTCTGCATGTCTRGCATATGTACCAATTCCGACTGAAAAAGAATAATACAGAAATCCGATAAAACCTCGAGTAATCACATCAGTCAGTTTTCTGGTCTGTGTGATAGTTTTGACCTAGAAAATATTGAAATTGTTCATGTTTAATATCTGCAGGGAGGTGTCCCCAGACGATCAGAACAAATCGCAGGTTCTGAATTCGTGCTATTTGATCAAGTGTGTTCACTACAACTAACATGAATCTGAACAATTTCCGCAATCTTACGGGAGCATTCTGTCTCGAGTAGTTCGAAAGGGCTGAATCTGACAGCGCTTTTTCAGAGAGTTTCTTGTCGATATATTTGTTTTTATCCAGAATACACTCTTTCATCTGGCCAAGGACACCCAGATCAGATAGAATATCCACCTAAATGTGAAGCAATAGATTATACATAACTATCACTACTCCACTATTTCACAACGACCATGACAATAACAACATTTCAGATTTACATATTTTGATAGATCCGAATATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGAGTTGAGGTCGAGTATCAT</pcr_primer_p1>
		<pcr_primer_p2>AGACCAGAAAACTGACTGATGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGAGTTGAGGTCGAGTATCATGTGTGTGTGATGTGAGACTGAAAATTCCAATTGATTTACAGATTTATCTGTCGGGGTCATGAATACCCGAATCACATGCACATCACATCCCCCAGGAGTCATCTCGTAATAGTCAGTAGCATCGCGTTCGTTCTGCATGTCTGGCATATGTACCAATTCCGACTGAAAAAGAATAATACAGAAATCCGATAAAACCTCGAGTAATCACATCAGTCAGTTTTCTGGTCT</canonical_amplicon>
		<polymorphic_amplicon>GTGAGTTGAGGTCGAGTATCATGTGTGTGTGATGTGAGACTGAAAATTCCAATTGATTTACAGATTTATCTGTCGGGGTCATGAATACCCGAATCACATGCACATCACATCCCCCAGGAGTCATCTCGTAATAGTCAGTAGCATCGCGTTCGTTCTGCATGTCTRGCATATGTACCAATTCCGACTGAAAAAGAATAATACAGAAATCCGATAAAACCTCGAGTAATCACATCAGTCAGTTTTCTGGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1669</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>127881</contig_pos>
        <strand>+</strand>
        <context>TCTRGCATAT[A/G]TACCARTTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATCTCGTAATAGTCAGTAGCATCGCGTTCGTTCTGCATGTCTGGCATAT</left_flank>
        <right_flank>TACCAATTCCGACTGAAAAAGAATAATACAGAAATCCGATAAAACCTCGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAGAATGAATATTTTTAATTGGCTCCAATTTTCACCAGTCGTTTATGCGGAACAGAAAGAGAATAGGACATTTCAAGGAAACATTGTTTTGGTTTACTGGTAGTTTCAATTAGATTCATTTAGGTAGAATCAATGTTAGTTTCCATTGATACTCGAAAAAAATCGTTAAAAACTTACACGACTCGGTTTGGTTGTTGCAATAATTTCGCGATCTTGTTCTAGTCTTGCAATGATGGTGTTTTGATAGTTAATGGAATAGTCTCCGTGTTGTACGAGATATTTAATCATCTGTTTGACTTCTTCAAGCAATTTGATGCCGTCTTCAGGTGAGTTGAGGTCGAGTATCATGTGTGTGTGATGTGAGACTGAAAATTCCAATTGATTTACAGATTTATCTGTCGGGGTCATGAATACCCGAATCACATGCACATCACATCCCCCAGGAGTCATCTCGTAATAGTCAGTAGCATCGCGTTCGTTCTGCATGTCTGGCATATGTACCAATTCCGACTGAAAAAGAATAATACAGAAATCCGATAAAACCTCGAGTAATCACATCAGTCAGTTTTCTGGTCTGTGTGATAGTTTTGACCTAGAAAATATTGAAATTGTTCATGTTTAATATCTGCAGGGAGGTGTCCCCAGACGATCAGAACAAATCGCAGGTTCTGAATTCGTGCTATTTGATCAAGTGTGTTCACTACAACTAACATGAATCTGAACAATTTCCGCAATCTTACGGGAGCATTCTGTCTCGAGTAGTTCGAAAGGGCTGAATCTGACAGCGCTTTTTCAGAGAGTTTCTTGTCGATATATTTGTTTTTATCCAGAATACACTCTTTCATCTGGCCAAGGACACCCAGATCAGATAGAATATCCACCTAAATGTGAAGCAATAGATTATACATAACTATCACTACTCCACTATTTCACAACGACCATGACAATAACAACATTTCAGATTTACATATTTTGATAGATCCGAATATCTTCCTGGT</canonical>
            <polymorphic>TTTAGAATGAATATTTTTAATTGGCTCCAATTTTCACCAGTCGTTTATGCGGAACAGAAAGAGAATAGGACATTTCAAGGAAACATTGTTTTGGTTTACTGGTAGTTTCAATTAGATTCATTTAGGTAGAATCAATGTTAGTTTCCATTGATACTCGAAAAAAATCGTTAAAAACTTACACGACTCGGTTTGGTTGTTGCAATAATTTCGCGATCTTGTTCTAGTCTTGCAATGATGGTGTTTTGATAGTTAATGGAATAGTCTCCGTGTTGTACGAGATATTTAATCATCTGTTTGACTTCTTCAAGCAATTTGATGCCGTCTTCAGGTGAGTTGAGGTCGAGTATCATGTGTGTGTGATGTGAGACTGAAAATTCCAATTGATTTACAGATTTATCTGTCGGGGTCATGAATACCCGAATCACATGCACATCACATCCCCCAGGAGTCATCTCGTAATAGTCAGTAGCATCGCGTTCGTTCTGCATGTCTGGCATATRTACCAATTCCGACTGAAAAAGAATAATACAGAAATCCGATAAAACCTCGAGTAATCACATCAGTCAGTTTTCTGGTCTGTGTGATAGTTTTGACCTAGAAAATATTGAAATTGTTCATGTTTAATATCTGCAGGGAGGTGTCCCCAGACGATCAGAACAAATCGCAGGTTCTGAATTCGTGCTATTTGATCAAGTGTGTTCACTACAACTAACATGAATCTGAACAATTTCCGCAATCTTACGGGAGCATTCTGTCTCGAGTAGTTCGAAAGGGCTGAATCTGACAGCGCTTTTTCAGAGAGTTTCTTGTCGATATATTTGTTTTTATCCAGAATACACTCTTTCATCTGGCCAAGGACACCCAGATCAGATAGAATATCCACCTAAATGTGAAGCAATAGATTATACATAACTATCACTACTCCACTATTTCACAACGACCATGACAATAACAACATTTCAGATTTACATATTTTGATAGATCCGAATATCTTCCTGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 273 228</canonical_bands>
                <polymorphic_bands>727 273</polymorphic_bands>
            </assay>
            <assay>
                <site>CATATG</site>
                <isoschizomers>
                    <enzyme>FauNDI</enzyme>
                    <enzyme>NdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGAGTTGAGGTCGAGTATCAT</pcr_primer_p1>
		<pcr_primer_p2>AGACCAGAAAACTGACTGATGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGAGTTGAGGTCGAGTATCATGTGTGTGTGATGTGAGACTGAAAATTCCAATTGATTTACAGATTTATCTGTCGGGGTCATGAATACCCGAATCACATGCACATCACATCCCCCAGGAGTCATCTCGTAATAGTCAGTAGCATCGCGTTCGTTCTGCATGTCTGGCATATGTACCAATTCCGACTGAAAAAGAATAATACAGAAATCCGATAAAACCTCGAGTAATCACATCAGTCAGTTTTCTGGTCT</canonical_amplicon>
		<polymorphic_amplicon>GTGAGTTGAGGTCGAGTATCATGTGTGTGTGATGTGAGACTGAAAATTCCAATTGATTTACAGATTTATCTGTCGGGGTCATGAATACCCGAATCACATGCACATCACATCCCCCAGGAGTCATCTCGTAATAGTCAGTAGCATCGCGTTCGTTCTGCATGTCTGGCATATRTACCAATTCCGACTGAAAAAGAATAATACAGAAATCCGATAAAACCTCGAGTAATCACATCAGTCAGTTTTCTGGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1670</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>127887</contig_pos>
        <strand>+</strand>
        <context>ATATRTACCA[A/G]TTCCGACTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAATAGTCAGTAGCATCGCGTTCGTTCTGCATGTCTGGCATATGTACCA</left_flank>
        <right_flank>TTCCGACTGAAAAAGAATAATACAGAAATCCGATAAAACCTCGAGTAATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAATATTTTTAATTGGCTCCAATTTTCACCAGTCGTTTATGCGGAACAGAAAGAGAATAGGACATTTCAAGGAAACATTGTTTTGGTTTACTGGTAGTTTCAATTAGATTCATTTAGGTAGAATCAATGTTAGTTTCCATTGATACTCGAAAAAAATCGTTAAAAACTTACACGACTCGGTTTGGTTGTTGCAATAATTTCGCGATCTTGTTCTAGTCTTGCAATGATGGTGTTTTGATAGTTAATGGAATAGTCTCCGTGTTGTACGAGATATTTAATCATCTGTTTGACTTCTTCAAGCAATTTGATGCCGTCTTCAGGTGAGTTGAGGTCGAGTATCATGTGTGTGTGATGTGAGACTGAAAATTCCAATTGATTTACAGATTTATCTGTCGGGGTCATGAATACCCGAATCACATGCACATCACATCCCCCAGGAGTCATCTCGTAATAGTCAGTAGCATCGCGTTCGTTCTGCATGTCTGGCATATGTACCAATTCCGACTGAAAAAGAATAATACAGAAATCCGATAAAACCTCGAGTAATCACATCAGTCAGTTTTCTGGTCTGTGTGATAGTTTTGACCTAGAAAATATTGAAATTGTTCATGTTTAATATCTGCAGGGAGGTGTCCCCAGACGATCAGAACAAATCGCAGGTTCTGAATTCGTGCTATTTGATCAAGTGTGTTCACTACAACTAACATGAATCTGAACAATTTCCGCAATCTTACGGGAGCATTCTGTCTCGAGTAGTTCGAAAGGGCTGAATCTGACAGCGCTTTTTCAGAGAGTTTCTTGTCGATATATTTGTTTTTATCCAGAATACACTCTTTCATCTGGCCAAGGACACCCAGATCAGATAGAATATCCACCTAAATGTGAAGCAATAGATTATACATAACTATCACTACTCCACTATTTCACAACGACCATGACAATAACAACATTTCAGATTTACATATTTTGATAGATCCGAATATCTTCCTGGTCGAGAC</canonical>
            <polymorphic>ATGAATATTTTTAATTGGCTCCAATTTTCACCAGTCGTTTATGCGGAACAGAAAGAGAATAGGACATTTCAAGGAAACATTGTTTTGGTTTACTGGTAGTTTCAATTAGATTCATTTAGGTAGAATCAATGTTAGTTTCCATTGATACTCGAAAAAAATCGTTAAAAACTTACACGACTCGGTTTGGTTGTTGCAATAATTTCGCGATCTTGTTCTAGTCTTGCAATGATGGTGTTTTGATAGTTAATGGAATAGTCTCCGTGTTGTACGAGATATTTAATCATCTGTTTGACTTCTTCAAGCAATTTGATGCCGTCTTCAGGTGAGTTGAGGTCGAGTATCATGTGTGTGTGATGTGAGACTGAAAATTCCAATTGATTTACAGATTTATCTGTCGGGGTCATGAATACCCGAATCACATGCACATCACATCCCCCAGGAGTCATCTCGTAATAGTCAGTAGCATCGCGTTCGTTCTGCATGTCTGGCATATGTACCARTTCCGACTGAAAAAGAATAATACAGAAATCCGATAAAACCTCGAGTAATCACATCAGTCAGTTTTCTGGTCTGTGTGATAGTTTTGACCTAGAAAATATTGAAATTGTTCATGTTTAATATCTGCAGGGAGGTGTCCCCAGACGATCAGAACAAATCGCAGGTTCTGAATTCGTGCTATTTGATCAAGTGTGTTCACTACAACTAACATGAATCTGAACAATTTCCGCAATCTTACGGGAGCATTCTGTCTCGAGTAGTTCGAAAGGGCTGAATCTGACAGCGCTTTTTCAGAGAGTTTCTTGTCGATATATTTGTTTTTATCCAGAATACACTCTTTCATCTGGCCAAGGACACCCAGATCAGATAGAATATCCACCTAAATGTGAAGCAATAGATTATACATAACTATCACTACTCCACTATTTCACAACGACCATGACAATAACAACATTTCAGATTTACATATTTTGATAGATCCGAATATCTTCCTGGTCGAGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>281 126 106 104 94 81 65 63 52 12 10 6</canonical_bands>
                <polymorphic_bands>281 230 106 94 81 65 63 52 12 10 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGAGTTGAGGTCGAGTATCAT</pcr_primer_p1>
		<pcr_primer_p2>AGACCAGAAAACTGACTGATGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGAGTTGAGGTCGAGTATCATGTGTGTGTGATGTGAGACTGAAAATTCCAATTGATTTACAGATTTATCTGTCGGGGTCATGAATACCCGAATCACATGCACATCACATCCCCCAGGAGTCATCTCGTAATAGTCAGTAGCATCGCGTTCGTTCTGCATGTCTGGCATATGTACCAATTCCGACTGAAAAAGAATAATACAGAAATCCGATAAAACCTCGAGTAATCACATCAGTCAGTTTTCTGGTCT</canonical_amplicon>
		<polymorphic_amplicon>GTGAGTTGAGGTCGAGTATCATGTGTGTGTGATGTGAGACTGAAAATTCCAATTGATTTACAGATTTATCTGTCGGGGTCATGAATACCCGAATCACATGCACATCACATCCCCCAGGAGTCATCTCGTAATAGTCAGTAGCATCGCGTTCGTTCTGCATGTCTGGCATATGTACCARTTCCGACTGAAAAAGAATAATACAGAAATCCGATAAAACCTCGAGTAATCACATCAGTCAGTTTTCTGGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1671</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>127977</contig_pos>
        <strand>+</strand>
        <context>AGTTTTGACC[C/T]AGAAAATATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCGAGTAATCACATCAGTCAGTTTTCTGGTCTGTGTGATAGTTTTGACC</left_flank>
        <right_flank>AGAAAATATTGAAATTGTTCATGTTTAATATCTGCAGGGAGGTGTCCCCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTGGTAGTTTCAATTAGATTCATTTAGGTAGAATCAATGTTAGTTTCCATTGATACTCGAAAAAAATCGTTAAAAACTTACACGACTCGGTTTGGTTGTTGCAATAATTTCGCGATCTTGTTCTAGTCTTGCAATGATGGTGTTTTGATAGTTAATGGAATAGTCTCCGTGTTGTACGAGATATTTAATCATCTGTTTGACTTCTTCAAGCAATTTGATGCCGTCTTCAGGTGAGTTGAGGTCGAGTATCATGTGTGTGTGATGTGAGACTGAAAATTCCAATTGATTTACAGATTTATCTGTCGGGGTCATGAATACCCGAATCACATGCACATCACATCCCCCAGGAGTCATCTCGTAATAGTCAGTAGCATCGCGTTCGTTCTGCATGTCTGGCATATGTACCAATTCCGACTGAAAAAGAATAATACAGAAATCCGATAAAACCTCGAGTAATCACATCAGTCAGTTTTCTGGTCTGTGTGATAGTTTTGACCTAGAAAATATTGAAATTGTTCATGTTTAATATCTGCAGGGAGGTGTCCCCAGACGATCAGAACAAATCGCAGGTTCTGAATTCGTGCTATTTGATCAAGTGTGTTCACTACAACTAACATGAATCTGAACAATTTCCGCAATCTTACGGGAGCATTCTGTCTCGAGTAGTTCGAAAGGGCTGAATCTGACAGCGCTTTTTCAGAGAGTTTCTTGTCGATATATTTGTTTTTATCCAGAATACACTCTTTCATCTGGCCAAGGACACCCAGATCAGATAGAATATCCACCTAAATGTGAAGCAATAGATTATACATAACTATCACTACTCCACTATTTCACAACGACCATGACAATAACAACATTTCAGATTTACATATTTTGATAGATCCGAATATCTTCCTGGTCGAGACCATTTTTTCTCCAATATGGTCAACAGGCTCTCGACCTCTTCTATGTATGGCCGCCATTGTTGCGAATAGTAAATACCGCCAGTCCAGTGA</canonical>
            <polymorphic>TACTGGTAGTTTCAATTAGATTCATTTAGGTAGAATCAATGTTAGTTTCCATTGATACTCGAAAAAAATCGTTAAAAACTTACACGACTCGGTTTGGTTGTTGCAATAATTTCGCGATCTTGTTCTAGTCTTGCAATGATGGTGTTTTGATAGTTAATGGAATAGTCTCCGTGTTGTACGAGATATTTAATCATCTGTTTGACTTCTTCAAGCAATTTGATGCCGTCTTCAGGTGAGTTGAGGTCGAGTATCATGTGTGTGTGATGTGAGACTGAAAATTCCAATTGATTTACAGATTTATCTGTCGGGGTCATGAATACCCGAATCACATGCACATCACATCCCCCAGGAGTCATCTCGTAATAGTCAGTAGCATCGCGTTCGTTCTGCATGTCTGGCATATGTACCAATTCCGACTGAAAAAGAATAATACAGAAATCCGATAAAACCTCGAGTAATCACATCAGTCAGTTTTCTGGTCTGTGTGATAGTTTTGACCYAGAAAATATTGAAATTGTTCATGTTTAATATCTGCAGGGAGGTGTCCCCAGACGATCAGAACAAATCGCAGGTTCTGAATTCGTGCTATTTGATCAAGTGTGTTCACTACAACTAACATGAATCTGAACAATTTCCGCAATCTTACGGGAGCATTCTGTCTCGAGTAGTTCGAAAGGGCTGAATCTGACAGCGCTTTTTCAGAGAGTTTCTTGTCGATATATTTGTTTTTATCCAGAATACACTCTTTCATCTGGCCAAGGACACCCAGATCAGATAGAATATCCACCTAAATGTGAAGCAATAGATTATACATAACTATCACTACTCCACTATTTCACAACGACCATGACAATAACAACATTTCAGATTTACATATTTTGATAGATCCGAATATCTTCCTGGTCGAGACCATTTTTTCTCCAATATGGTCAACAGGCTCTCGACCTCTTCTATGTATGGCCGCCATTGTTGCGAATAGTAAATACCGCCAGTCCAGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 374 125</canonical_bands>
                <polymorphic_bands>875 125</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATACAGAAATCCGATAAAACCT</pcr_primer_p1>
		<pcr_primer_p2>TTCGAACTACTCGAGACAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATACAGAAATCCGATAAAACCTCGAGTAATCACATCAGTCAGTTTTCTGGTCTGTGTGATAGTTTTGACCTAGAAAATATTGAAATTGTTCATGTTTAATATCTGCAGGGAGGTGTCCCCAGACGATCAGAACAAATCGCAGGTTCTGAATTCGTGCTATTTGATCAAGTGTGTTCACTACAACTAACATGAATCTGAACAATTTCCGCAATCTTACGGGAGCATTCTGTCTCGAGTAGTTCGAA</canonical_amplicon>
		<polymorphic_amplicon>AATACAGAAATCCGATAAAACCTCGAGTAATCACATCAGTCAGTTTTCTGGTCTGTGTGATAGTTTTGACCYAGAAAATATTGAAATTGTTCATGTTTAATATCTGCAGGGAGGTGTCCCCAGACGATCAGAACAAATCGCAGGTTCTGAATTCGTGCTATTTGATCAAGTGTGTTCACTACAACTAACATGAATCTGAACAATTTCCGCAATCTTACGGGAGCATTCTGTCTCGAGTAGTTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1672</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>127988</contig_pos>
        <strand>+</strand>
        <context>AGAAAATATT[A/G]AAATTGTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATCAGTCAGTTTTCTGGTCTGTGTGATAGTTTTGACCTAGAAAATATT</left_flank>
        <right_flank>AAATTGTTCATGTTTAATATCTGCAGGGAGGTGTCCCCAGACGATCAGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAATTAGATTCATTTAGGTAGAATCAATGTTAGTTTCCATTGATACTCGAAAAAAATCGTTAAAAACTTACACGACTCGGTTTGGTTGTTGCAATAATTTCGCGATCTTGTTCTAGTCTTGCAATGATGGTGTTTTGATAGTTAATGGAATAGTCTCCGTGTTGTACGAGATATTTAATCATCTGTTTGACTTCTTCAAGCAATTTGATGCCGTCTTCAGGTGAGTTGAGGTCGAGTATCATGTGTGTGTGATGTGAGACTGAAAATTCCAATTGATTTACAGATTTATCTGTCGGGGTCATGAATACCCGAATCACATGCACATCACATCCCCCAGGAGTCATCTCGTAATAGTCAGTAGCATCGCGTTCGTTCTGCATGTCTGGCATATGTACCAATTCCGACTGAAAAAGAATAATACAGAAATCCGATAAAACCTCGAGTAATCACATCAGTCAGTTTTCTGGTCTGTGTGATAGTTTTGACCTAGAAAATATTGAAATTGTTCATGTTTAATATCTGCAGGGAGGTGTCCCCAGACGATCAGAACAAATCGCAGGTTCTGAATTCGTGCTATTTGATCAAGTGTGTTCACTACAACTAACATGAATCTGAACAATTTCCGCAATCTTACGGGAGCATTCTGTCTCGAGTAGTTCGAAAGGGCTGAATCTGACAGCGCTTTTTCAGAGAGTTTCTTGTCGATATATTTGTTTTTATCCAGAATACACTCTTTCATCTGGCCAAGGACACCCAGATCAGATAGAATATCCACCTAAATGTGAAGCAATAGATTATACATAACTATCACTACTCCACTATTTCACAACGACCATGACAATAACAACATTTCAGATTTACATATTTTGATAGATCCGAATATCTTCCTGGTCGAGACCATTTTTTCTCCAATATGGTCAACAGGCTCTCGACCTCTTCTATGTATGGCCGCCATTGTTGCGAATAGTAAATACCGCCAGTCCAGTGATATTTTTGCAT</canonical>
            <polymorphic>TCAATTAGATTCATTTAGGTAGAATCAATGTTAGTTTCCATTGATACTCGAAAAAAATCGTTAAAAACTTACACGACTCGGTTTGGTTGTTGCAATAATTTCGCGATCTTGTTCTAGTCTTGCAATGATGGTGTTTTGATAGTTAATGGAATAGTCTCCGTGTTGTACGAGATATTTAATCATCTGTTTGACTTCTTCAAGCAATTTGATGCCGTCTTCAGGTGAGTTGAGGTCGAGTATCATGTGTGTGTGATGTGAGACTGAAAATTCCAATTGATTTACAGATTTATCTGTCGGGGTCATGAATACCCGAATCACATGCACATCACATCCCCCAGGAGTCATCTCGTAATAGTCAGTAGCATCGCGTTCGTTCTGCATGTCTGGCATATGTACCAATTCCGACTGAAAAAGAATAATACAGAAATCCGATAAAACCTCGAGTAATCACATCAGTCAGTTTTCTGGTCTGTGTGATAGTTTTGACCTAGAAAATATTRAAATTGTTCATGTTTAATATCTGCAGGGAGGTGTCCCCAGACGATCAGAACAAATCGCAGGTTCTGAATTCGTGCTATTTGATCAAGTGTGTTCACTACAACTAACATGAATCTGAACAATTTCCGCAATCTTACGGGAGCATTCTGTCTCGAGTAGTTCGAAAGGGCTGAATCTGACAGCGCTTTTTCAGAGAGTTTCTTGTCGATATATTTGTTTTTATCCAGAATACACTCTTTCATCTGGCCAAGGACACCCAGATCAGATAGAATATCCACCTAAATGTGAAGCAATAGATTATACATAACTATCACTACTCCACTATTTCACAACGACCATGACAATAACAACATTTCAGATTTACATATTTTGATAGATCCGAATATCTTCCTGGTCGAGACCATTTTTTCTCCAATATGGTCAACAGGCTCTCGACCTCTTCTATGTATGGCCGCCATTGTTGCGAATAGTAAATACCGCCAGTCCAGTGATATTTTTGCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>504 264 117 115</canonical_bands>
                <polymorphic_bands>619 264 117</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATACAGAAATCCGATAAAACCT</pcr_primer_p1>
		<pcr_primer_p2>TTCGAACTACTCGAGACAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATACAGAAATCCGATAAAACCTCGAGTAATCACATCAGTCAGTTTTCTGGTCTGTGTGATAGTTTTGACCTAGAAAATATTGAAATTGTTCATGTTTAATATCTGCAGGGAGGTGTCCCCAGACGATCAGAACAAATCGCAGGTTCTGAATTCGTGCTATTTGATCAAGTGTGTTCACTACAACTAACATGAATCTGAACAATTTCCGCAATCTTACGGGAGCATTCTGTCTCGAGTAGTTCGAA</canonical_amplicon>
		<polymorphic_amplicon>AATACAGAAATCCGATAAAACCTCGAGTAATCACATCAGTCAGTTTTCTGGTCTGTGTGATAGTTTTGACCTAGAAAATATTRAAATTGTTCATGTTTAATATCTGCAGGGAGGTGTCCCCAGACGATCAGAACAAATCGCAGGTTCTGAATTCGTGCTATTTGATCAAGTGTGTTCACTACAACTAACATGAATCTGAACAATTTCCGCAATCTTACGGGAGCATTCTGTCTCGAGTAGTTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1673</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>128028</contig_pos>
        <strand>+</strand>
        <context>GGTGTCCCCA[A/G]ACGATCAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAAATATTGAAATTGTTCATGTTTAATATCTGCAGGGAGGTGTCCCCA</left_flank>
        <right_flank>ACGATCAGAACAAATCGCAGGTTCTGAATTCGTGCTATTTGATCAAGTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGATACTCGAAAAAAATCGTTAAAAACTTACACGACTCGGTTTGGTTGTTGCAATAATTTCGCGATCTTGTTCTAGTCTTGCAATGATGGTGTTTTGATAGTTAATGGAATAGTCTCCGTGTTGTACGAGATATTTAATCATCTGTTTGACTTCTTCAAGCAATTTGATGCCGTCTTCAGGTGAGTTGAGGTCGAGTATCATGTGTGTGTGATGTGAGACTGAAAATTCCAATTGATTTACAGATTTATCTGTCGGGGTCATGAATACCCGAATCACATGCACATCACATCCCCCAGGAGTCATCTCGTAATAGTCAGTAGCATCGCGTTCGTTCTGCATGTCTGGCATATGTACCAATTCCGACTGAAAAAGAATAATACAGAAATCCGATAAAACCTCGAGTAATCACATCAGTCAGTTTTCTGGTCTGTGTGATAGTTTTGACCTAGAAAATATTGAAATTGTTCATGTTTAATATCTGCAGGGAGGTGTCCCCAGACGATCAGAACAAATCGCAGGTTCTGAATTCGTGCTATTTGATCAAGTGTGTTCACTACAACTAACATGAATCTGAACAATTTCCGCAATCTTACGGGAGCATTCTGTCTCGAGTAGTTCGAAAGGGCTGAATCTGACAGCGCTTTTTCAGAGAGTTTCTTGTCGATATATTTGTTTTTATCCAGAATACACTCTTTCATCTGGCCAAGGACACCCAGATCAGATAGAATATCCACCTAAATGTGAAGCAATAGATTATACATAACTATCACTACTCCACTATTTCACAACGACCATGACAATAACAACATTTCAGATTTACATATTTTGATAGATCCGAATATCTTCCTGGTCGAGACCATTTTTTCTCCAATATGGTCAACAGGCTCTCGACCTCTTCTATGTATGGCCGCCATTGTTGCGAATAGTAAATACCGCCAGTCCAGTGATATTTTTGCATGGACTTCTCCTAAATTTGAAGTGAATTTTCAAGATTTCCT</canonical>
            <polymorphic>TTGATACTCGAAAAAAATCGTTAAAAACTTACACGACTCGGTTTGGTTGTTGCAATAATTTCGCGATCTTGTTCTAGTCTTGCAATGATGGTGTTTTGATAGTTAATGGAATAGTCTCCGTGTTGTACGAGATATTTAATCATCTGTTTGACTTCTTCAAGCAATTTGATGCCGTCTTCAGGTGAGTTGAGGTCGAGTATCATGTGTGTGTGATGTGAGACTGAAAATTCCAATTGATTTACAGATTTATCTGTCGGGGTCATGAATACCCGAATCACATGCACATCACATCCCCCAGGAGTCATCTCGTAATAGTCAGTAGCATCGCGTTCGTTCTGCATGTCTGGCATATGTACCAATTCCGACTGAAAAAGAATAATACAGAAATCCGATAAAACCTCGAGTAATCACATCAGTCAGTTTTCTGGTCTGTGTGATAGTTTTGACCTAGAAAATATTGAAATTGTTCATGTTTAATATCTGCAGGGAGGTGTCCCCARACGATCAGAACAAATCGCAGGTTCTGAATTCGTGCTATTTGATCAAGTGTGTTCACTACAACTAACATGAATCTGAACAATTTCCGCAATCTTACGGGAGCATTCTGTCTCGAGTAGTTCGAAAGGGCTGAATCTGACAGCGCTTTTTCAGAGAGTTTCTTGTCGATATATTTGTTTTTATCCAGAATACACTCTTTCATCTGGCCAAGGACACCCAGATCAGATAGAATATCCACCTAAATGTGAAGCAATAGATTATACATAACTATCACTACTCCACTATTTCACAACGACCATGACAATAACAACATTTCAGATTTACATATTTTGATAGATCCGAATATCTTCCTGGTCGAGACCATTTTTTCTCCAATATGGTCAACAGGCTCTCGACCTCTTCTATGTATGGCCGCCATTGTTGCGAATAGTAAATACCGCCAGTCCAGTGATATTTTTGCATGGACTTCTCCTAAATTTGAAGTGAATTTTCAAGATTTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCTGGTCTGTGTGATAGTT</pcr_primer_p1>
		<pcr_primer_p2>ATATCGACAAGAAACTCTCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCTGGTCTGTGTGATAGTTTTGACCTAGAAAATATTGAAATTGTTCATGTTTAATATCTGCAGGGAGGTGTCCCCAGACGATCAGAACAAATCGCAGGTTCTGAATTCGTGCTATTTGATCAAGTGTGTTCACTACAACTAACATGAATCTGAACAATTTCCGCAATCTTACGGGAGCATTCTGTCTCGAGTAGTTCGAAAGGGCTGAATCTGACAGCGCTTTTTCAGAGAGTTTCTTGTCGATAT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCTGGTCTGTGTGATAGTTTTGACCTAGAAAATATTGAAATTGTTCATGTTTAATATCTGCAGGGAGGTGTCCCCARACGATCAGAACAAATCGCAGGTTCTGAATTCGTGCTATTTGATCAAGTGTGTTCACTACAACTAACATGAATCTGAACAATTTCCGCAATCTTACGGGAGCATTCTGTCTCGAGTAGTTCGAAAGGGCTGAATCTGACAGCGCTTTTTCAGAGAGTTTCTTGTCGATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1674</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>128050</contig_pos>
        <strand>+</strand>
        <context>AAATCGCAGG[C/T]TCTGAATTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTAATATCTGCAGGGAGGTGTCCCCAGACGATCAGAACAAATCGCAGG</left_flank>
        <right_flank>TCTGAATTCGTGCTATTTGATCAAGTGTGTTCACTACAACTAACATGAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAACTTACACGACTCGGTTTGGTTGTTGCAATAATTTCGCGATCTTGTTCTAGTCTTGCAATGATGGTGTTTTGATAGTTAATGGAATAGTCTCCGTGTTGTACGAGATATTTAATCATCTGTTTGACTTCTTCAAGCAATTTGATGCCGTCTTCAGGTGAGTTGAGGTCGAGTATCATGTGTGTGTGATGTGAGACTGAAAATTCCAATTGATTTACAGATTTATCTGTCGGGGTCATGAATACCCGAATCACATGCACATCACATCCCCCAGGAGTCATCTCGTAATAGTCAGTAGCATCGCGTTCGTTCTGCATGTCTGGCATATGTACCAATTCCGACTGAAAAAGAATAATACAGAAATCCGATAAAACCTCGAGTAATCACATCAGTCAGTTTTCTGGTCTGTGTGATAGTTTTGACCTAGAAAATATTGAAATTGTTCATGTTTAATATCTGCAGGGAGGTGTCCCCAGACGATCAGAACAAATCGCAGGTTCTGAATTCGTGCTATTTGATCAAGTGTGTTCACTACAACTAACATGAATCTGAACAATTTCCGCAATCTTACGGGAGCATTCTGTCTCGAGTAGTTCGAAAGGGCTGAATCTGACAGCGCTTTTTCAGAGAGTTTCTTGTCGATATATTTGTTTTTATCCAGAATACACTCTTTCATCTGGCCAAGGACACCCAGATCAGATAGAATATCCACCTAAATGTGAAGCAATAGATTATACATAACTATCACTACTCCACTATTTCACAACGACCATGACAATAACAACATTTCAGATTTACATATTTTGATAGATCCGAATATCTTCCTGGTCGAGACCATTTTTTCTCCAATATGGTCAACAGGCTCTCGACCTCTTCTATGTATGGCCGCCATTGTTGCGAATAGTAAATACCGCCAGTCCAGTGATATTTTTGCATGGACTTCTCCTAAATTTGAAGTGAATTTTCAAGATTTCCTAACATTATCAGATTCAAGGATT</canonical>
            <polymorphic>AAAAACTTACACGACTCGGTTTGGTTGTTGCAATAATTTCGCGATCTTGTTCTAGTCTTGCAATGATGGTGTTTTGATAGTTAATGGAATAGTCTCCGTGTTGTACGAGATATTTAATCATCTGTTTGACTTCTTCAAGCAATTTGATGCCGTCTTCAGGTGAGTTGAGGTCGAGTATCATGTGTGTGTGATGTGAGACTGAAAATTCCAATTGATTTACAGATTTATCTGTCGGGGTCATGAATACCCGAATCACATGCACATCACATCCCCCAGGAGTCATCTCGTAATAGTCAGTAGCATCGCGTTCGTTCTGCATGTCTGGCATATGTACCAATTCCGACTGAAAAAGAATAATACAGAAATCCGATAAAACCTCGAGTAATCACATCAGTCAGTTTTCTGGTCTGTGTGATAGTTTTGACCTAGAAAATATTGAAATTGTTCATGTTTAATATCTGCAGGGAGGTGTCCCCAGACGATCAGAACAAATCGCAGGYTCTGAATTCGTGCTATTTGATCAAGTGTGTTCACTACAACTAACATGAATCTGAACAATTTCCGCAATCTTACGGGAGCATTCTGTCTCGAGTAGTTCGAAAGGGCTGAATCTGACAGCGCTTTTTCAGAGAGTTTCTTGTCGATATATTTGTTTTTATCCAGAATACACTCTTTCATCTGGCCAAGGACACCCAGATCAGATAGAATATCCACCTAAATGTGAAGCAATAGATTATACATAACTATCACTACTCCACTATTTCACAACGACCATGACAATAACAACATTTCAGATTTACATATTTTGATAGATCCGAATATCTTCCTGGTCGAGACCATTTTTTCTCCAATATGGTCAACAGGCTCTCGACCTCTTCTATGTATGGCCGCCATTGTTGCGAATAGTAAATACCGCCAGTCCAGTGATATTTTTGCATGGACTTCTCCTAAATTTGAAGTGAATTTTCAAGATTTCCTAACATTATCAGATTCAAGGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCTGGTCTGTGTGATAGTT</pcr_primer_p1>
		<pcr_primer_p2>ATATCGACAAGAAACTCTCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCTGGTCTGTGTGATAGTTTTGACCTAGAAAATATTGAAATTGTTCATGTTTAATATCTGCAGGGAGGTGTCCCCAGACGATCAGAACAAATCGCAGGTTCTGAATTCGTGCTATTTGATCAAGTGTGTTCACTACAACTAACATGAATCTGAACAATTTCCGCAATCTTACGGGAGCATTCTGTCTCGAGTAGTTCGAAAGGGCTGAATCTGACAGCGCTTTTTCAGAGAGTTTCTTGTCGATAT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCTGGTCTGTGTGATAGTTTTGACCTAGAAAATATTGAAATTGTTCATGTTTAATATCTGCAGGGAGGTGTCCCCAGACGATCAGAACAAATCGCAGGYTCTGAATTCGTGCTATTTGATCAAGTGTGTTCACTACAACTAACATGAATCTGAACAATTTCCGCAATCTTACGGGAGCATTCTGTCTCGAGTAGTTCGAAAGGGCTGAATCTGACAGCGCTTTTTCAGAGAGTTTCTTGTCGATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1675</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>128165</contig_pos>
        <strand>+</strand>
        <context>GCTGAATCTG[A/C]CAGCGCTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAATCTTACGGGAGCATTCTGTCTCGAGTAGTTCGAAAGGGCTGAATCTG</left_flank>
        <right_flank>CAGCGCTTTTTCAGAGAGTTTCTTGTCGATATATTTGTTTTTATCCAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCATCTGTTTGACTTCTTCAAGCAATTTGATGCCGTCTTCAGGTGAGTTGAGGTCGAGTATCATGTGTGTGTGATGTGAGACTGAAAATTCCAATTGATTTACAGATTTATCTGTCGGGGTCATGAATACCCGAATCACATGCACATCACATCCCCCAGGAGTCATCTCGTAATAGTCAGTAGCATCGCGTTCGTTCTGCATGTCTGGCATATGTACCAATTCCGACTGAAAAAGAATAATACAGAAATCCGATAAAACCTCGAGTAATCACATCAGTCAGTTTTCTGGTCTGTGTGATAGTTTTGACCTAGAAAATATTGAAATTGTTCATGTTTAATATCTGCAGGGAGGTGTCCCCAGACGATCAGAACAAATCGCAGGTTCTGAATTCGTGCTATTTGATCAAGTGTGTTCACTACAACTAACATGAATCTGAACAATTTCCGCAATCTTACGGGAGCATTCTGTCTCGAGTAGTTCGAAAGGGCTGAATCTGACAGCGCTTTTTCAGAGAGTTTCTTGTCGATATATTTGTTTTTATCCAGAATACACTCTTTCATCTGGCCAAGGACACCCAGATCAGATAGAATATCCACCTAAATGTGAAGCAATAGATTATACATAACTATCACTACTCCACTATTTCACAACGACCATGACAATAACAACATTTCAGATTTACATATTTTGATAGATCCGAATATCTTCCTGGTCGAGACCATTTTTTCTCCAATATGGTCAACAGGCTCTCGACCTCTTCTATGTATGGCCGCCATTGTTGCGAATAGTAAATACCGCCAGTCCAGTGATATTTTTGCATGGACTTCTCCTAAATTTGAAGTGAATTTTCAAGATTTCCTAACATTATCAGATTCAAGGATTCCCAAAGTTTTTGGCTTTCAATAGAACTATAGATGTGTCGCGCGTGTGTTGCGACACTCATGGGATGTTCGGACCGGGATTGGAAATACCGAAAATTCCGAAAACGATTTGAGTA</canonical>
            <polymorphic>AATCATCTGTTTGACTTCTTCAAGCAATTTGATGCCGTCTTCAGGTGAGTTGAGGTCGAGTATCATGTGTGTGTGATGTGAGACTGAAAATTCCAATTGATTTACAGATTTATCTGTCGGGGTCATGAATACCCGAATCACATGCACATCACATCCCCCAGGAGTCATCTCGTAATAGTCAGTAGCATCGCGTTCGTTCTGCATGTCTGGCATATGTACCAATTCCGACTGAAAAAGAATAATACAGAAATCCGATAAAACCTCGAGTAATCACATCAGTCAGTTTTCTGGTCTGTGTGATAGTTTTGACCTAGAAAATATTGAAATTGTTCATGTTTAATATCTGCAGGGAGGTGTCCCCAGACGATCAGAACAAATCGCAGGTTCTGAATTCGTGCTATTTGATCAAGTGTGTTCACTACAACTAACATGAATCTGAACAATTTCCGCAATCTTACGGGAGCATTCTGTCTCGAGTAGTTCGAAAGGGCTGAATCTGMCAGCGCTTTTTCAGAGAGTTTCTTGTCGATATATTTGTTTTTATCCAGAATACACTCTTTCATCTGGCCAAGGACACCCAGATCAGATAGAATATCCACCTAAATGTGAAGCAATAGATTATACATAACTATCACTACTCCACTATTTCACAACGACCATGACAATAACAACATTTCAGATTTACATATTTTGATAGATCCGAATATCTTCCTGGTCGAGACCATTTTTTCTCCAATATGGTCAACAGGCTCTCGACCTCTTCTATGTATGGCCGCCATTGTTGCGAATAGTAAATACCGCCAGTCCAGTGATATTTTTGCATGGACTTCTCCTAAATTTGAAGTGAATTTTCAAGATTTCCTAACATTATCAGATTCAAGGATTCCCAAAGTTTTTGGCTTTCAATAGAACTATAGATGTGTCGCGCGTGTGTTGCGACACTCATGGGATGTTCGGACCGGGATTGGAAATACCGAAAATTCCGAAAACGATTTGAGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>226 172 117 93 83 72 61 49 28 27 23 18 16 15</canonical_bands>
                <polymorphic_bands>226 172 117 93 83 76 72 49 28 27 23 18 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGTGTGTTCACTACAACTAACA</pcr_primer_p1>
		<pcr_primer_p2>TCGTTGTGAAATAGTGGAGTAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAGTGTGTTCACTACAACTAACATGAATCTGAACAATTTCCGCAATCTTACGGGAGCATTCTGTCTCGAGTAGTTCGAAAGGGCTGAATCTGACAGCGCTTTTTCAGAGAGTTTCTTGTCGATATATTTGTTTTTATCCAGAATACACTCTTTCATCTGGCCAAGGACACCCAGATCAGATAGAATATCCACCTAAATGTGAAGCAATAGATTATACATAACTATCACTACTCCACTATTTCACAACGA</canonical_amplicon>
		<polymorphic_amplicon>CAAGTGTGTTCACTACAACTAACATGAATCTGAACAATTTCCGCAATCTTACGGGAGCATTCTGTCTCGAGTAGTTCGAAAGGGCTGAATCTGMCAGCGCTTTTTCAGAGAGTTTCTTGTCGATATATTTGTTTTTATCCAGAATACACTCTTTCATCTGGCCAAGGACACCCAGATCAGATAGAATATCCACCTAAATGTGAAGCAATAGATTATACATAACTATCACTACTCCACTATTTCACAACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1676</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>130302</contig_pos>
        <strand></strand>
        <context>agttgatttt[T/C]aattattttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTT</left_flank>
        <right_flank>AATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGACCGTTACTGTAGTTGCAACTACTCGAAATAGATTTTTAATATCAAAAAATGACGGCTGTGCCGGAGTATATTATCAGAACAAAGCTGAAAAGCACACAGTGTAAAATTGATGCTACCGTAACTTGGTGAAACATACAATTAACAAAATTCTCTTTGCTAGTTGAAACTGTACACATGAATTTCTTGTTTTTATTTCAAACAAGAGAAAAGAGAGGAAATTCGAGTGGAGAGAAAGAAACGATTCCTACAATAAACTTCAGCCATAAAAAATTTGATTTCTGAACGGAAGAAAGGATCGCAACCACTATTGCATGAATCCCAAAAAGAAAACATTACAAATATTTAGAAATACCCCCCATCAATGTTTGGCCGTACTGACGTCTTTAGCTAATGACTCGTTACCAATAAATGCCGAGTTAGTTTGAGTGAAGAAGAAAATATTAAAAATA</canonical>
            <polymorphic>TGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTYAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGACCGTTACTGTAGTTGCAACTACTCGAAATAGATTTTTAATATCAAAAAATGACGGCTGTGCCGGAGTATATTATCAGAACAAAGCTGAAAAGCACACAGTGTAAAATTGATGCTACCGTAACTTGGTGAAACATACAATTAACAAAATTCTCTTTGCTAGTTGAAACTGTACACATGAATTTCTTGTTTTTATTTCAAACAAGAGAAAAGAGAGGAAATTCGAGTGGAGAGAAAGAAACGATTCCTACAATAAACTTCAGCCATAAAAAATTTGATTTCTGAACGGAAGAAAGGATCGCAACCACTATTGCATGAATCCCAAAAAGAAAACATTACAAATATTTAGAAATACCCCCCATCAATGTTTGGCCGTACTGACGTCTTTAGCTAATGACTCGTTACCAATAAATGCCGAGTTAGTTTGAGTGAAGAAGAAAATATTAAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>337 302 147 103 88 15 8</canonical_bands>
                <polymorphic_bands>337 302 235 103 15 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAACAAATTGCAGGTTACA</pcr_primer_p1>
		<pcr_primer_p2>CAGTAACGGTCAATATGATACAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGACCGTTACTG</canonical_amplicon>
		<polymorphic_amplicon>AAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTYAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGACCGTTACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1677</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>130258</contig_pos>
        <strand></strand>
        <context>AATATacagt[A/C]ccaaccaata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGT</left_flank>
        <right_flank>CCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGACCGTTACTGTAGTTGCAACTACTCGAAATAGATTTTTAATATCAAAAAATGACGGCTGTGCCGGAGTATATTATCAGAACAAAGCTGAAAAGCACACAGTGTAAAATTGATGCTACCGTAACTTGGTGAAACATACAATTAACAAAATTCTCTTTGCTAGTTGAAACTGTACACATGAATTTCTTGTTTTTATTTCAAACAAGAGAAAAGAGAGGAAATTCGAGTGGAGAGAAAGAAACGATTCCTACAATAAACTTCAGCCATAAAAAATTTGATTTCTGAACGGAAGAAAGGATCGCAACCACTATTGCATGAATCCCAAAAAGAAAACATTACAAATATTTAGAAATACCCCCCATCAATGTTTGGCCGTACTGACGTCTTTAGCTAATGACTCGTTACCAA</canonical>
            <polymorphic>AGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTMCCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGACCGTTACTGTAGTTGCAACTACTCGAAATAGATTTTTAATATCAAAAAATGACGGCTGTGCCGGAGTATATTATCAGAACAAAGCTGAAAAGCACACAGTGTAAAATTGATGCTACCGTAACTTGGTGAAACATACAATTAACAAAATTCTCTTTGCTAGTTGAAACTGTACACATGAATTTCTTGTTTTTATTTCAAACAAGAGAAAAGAGAGGAAATTCGAGTGGAGAGAAAGAAACGATTCCTACAATAAACTTCAGCCATAAAAAATTTGATTTCTGAACGGAAGAAAGGATCGCAACCACTATTGCATGAATCCCAAAAAGAAAACATTACAAATATTTAGAAATACCCCCCATCAATGTTTGGCCGTACTGACGTCTTTAGCTAATGACTCGTTACCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 266 203 32</canonical_bands>
                <polymorphic_bands>765 203 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAACAAATTGCAGGTTACA</pcr_primer_p1>
		<pcr_primer_p2>CAGTAACGGTCAATATGATACAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGACCGTTACTG</canonical_amplicon>
		<polymorphic_amplicon>AAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTMCCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGACCGTTACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1678</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>130241</contig_pos>
        <strand>+</strand>
        <context>CATCGAAATT[C/T]ATTCAAAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATT</left_flank>
        <right_flank>ATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCCCTAAAAAGTTTTAGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGACCGTTACTGTAGTTGCAACTACTCGAAATAGATTTTTAATATCAAAAAATGACGGCTGTGCCGGAGTATATTATCAGAACAAAGCTGAAAAGCACACAGTGTAAAATTGATGCTACCGTAACTTGGTGAAACATACAATTAACAAAATTCTCTTTGCTAGTTGAAACTGTACACATGAATTTCTTGTTTTTATTTCAAACAAGAGAAAAGAGAGGAAATTCGAGTGGAGAGAAAGAAACGATTCCTACAATAAACTTCAGCCATAAAAAATTTGATTTCTGAACGGAAGAAAGGATCGCAACCACTATTGCATGAATCCCAAAAAGAAAACATTACAAATATTTAGAAATACCCCCCATCAATGTTTGGCCGTACTGACGTCTTTAGC</canonical>
            <polymorphic>AATCCCTAAAAAGTTTTAGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTYATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGACCGTTACTGTAGTTGCAACTACTCGAAATAGATTTTTAATATCAAAAAATGACGGCTGTGCCGGAGTATATTATCAGAACAAAGCTGAAAAGCACACAGTGTAAAATTGATGCTACCGTAACTTGGTGAAACATACAATTAACAAAATTCTCTTTGCTAGTTGAAACTGTACACATGAATTTCTTGTTTTTATTTCAAACAAGAGAAAAGAGAGGAAATTCGAGTGGAGAGAAAGAAACGATTCCTACAATAAACTTCAGCCATAAAAAATTTGATTTCTGAACGGAAGAAAGGATCGCAACCACTATTGCATGAATCCCAAAAAGAAAACATTACAAATATTTAGAAATACCCCCCATCAATGTTTGGCCGTACTGACGTCTTTAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>182 161 126 120 104 80 70 52 39 32 26 8</canonical_bands>
                <polymorphic_bands>182 161 126 120 106 104 70 52 39 32 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAACAAATTGCAGGTTACA</pcr_primer_p1>
		<pcr_primer_p2>CAGTAACGGTCAATATGATACAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGACCGTTACTG</canonical_amplicon>
		<polymorphic_amplicon>AAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTYATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGACCGTTACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1679</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>130229</contig_pos>
        <strand>+</strand>
        <context>CTTCGTAATG[A/T]TCATCGAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATG</left_flank>
        <right_flank>TCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAACTTGAAAAATCCCTAAAAAGTTTTAGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGACCGTTACTGTAGTTGCAACTACTCGAAATAGATTTTTAATATCAAAAAATGACGGCTGTGCCGGAGTATATTATCAGAACAAAGCTGAAAAGCACACAGTGTAAAATTGATGCTACCGTAACTTGGTGAAACATACAATTAACAAAATTCTCTTTGCTAGTTGAAACTGTACACATGAATTTCTTGTTTTTATTTCAAACAAGAGAAAAGAGAGGAAATTCGAGTGGAGAGAAAGAAACGATTCCTACAATAAACTTCAGCCATAAAAAATTTGATTTCTGAACGGAAGAAAGGATCGCAACCACTATTGCATGAATCCCAAAAAGAAAACATTACAAATATTTAGAAATACCCCCCATCAATGTTTGGCCGTACT</canonical>
            <polymorphic>GAAAACTTGAAAAATCCCTAAAAAGTTTTAGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGWTCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGACCGTTACTGTAGTTGCAACTACTCGAAATAGATTTTTAATATCAAAAAATGACGGCTGTGCCGGAGTATATTATCAGAACAAAGCTGAAAAGCACACAGTGTAAAATTGATGCTACCGTAACTTGGTGAAACATACAATTAACAAAATTCTCTTTGCTAGTTGAAACTGTACACATGAATTTCTTGTTTTTATTTCAAACAAGAGAAAAGAGAGGAAATTCGAGTGGAGAGAAAGAAACGATTCCTACAATAAACTTCAGCCATAAAAAATTTGATTTCTGAACGGAAGAAAGGATCGCAACCACTATTGCATGAATCCCAAAAAGAAAACATTACAAATATTTAGAAATACCCCCCATCAATGTTTGGCCGTACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>498 419 83</canonical_bands>
                <polymorphic_bands>917 83</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAACAAATTGCAGGTTACA</pcr_primer_p1>
		<pcr_primer_p2>CAGTAACGGTCAATATGATACAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGACCGTTACTG</canonical_amplicon>
		<polymorphic_amplicon>AAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGWTCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGACCGTTACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1680</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>130183</contig_pos>
        <strand>+</strand>
        <context>CATTCCAGTT[C/T]AATAAAAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTT</left_flank>
        <right_flank>AATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTGCAAATCTTAATCAATAACAATTCAAATAGAATGTTTCTACAGAAAACTTGAAAAATCCCTAAAAAGTTTTAGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGACCGTTACTGTAGTTGCAACTACTCGAAATAGATTTTTAATATCAAAAAATGACGGCTGTGCCGGAGTATATTATCAGAACAAAGCTGAAAAGCACACAGTGTAAAATTGATGCTACCGTAACTTGGTGAAACATACAATTAACAAAATTCTCTTTGCTAGTTGAAACTGTACACATGAATTTCTTGTTTTTATTTCAAACAAGAGAAAAGAGAGGAAATTCGAGTGGAGAGAAAGAAACGATTCCTACAATAAACTTCAGCCATAAAAAATTTGATTTCTGAACGGAAGAAAGGATCGCAACCACTATTGCATGAATCCCAAAAAGAAAA</canonical>
            <polymorphic>CACTGCAAATCTTAATCAATAACAATTCAAATAGAATGTTTCTACAGAAAACTTGAAAAATCCCTAAAAAGTTTTAGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTYAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGACCGTTACTGTAGTTGCAACTACTCGAAATAGATTTTTAATATCAAAAAATGACGGCTGTGCCGGAGTATATTATCAGAACAAAGCTGAAAAGCACACAGTGTAAAATTGATGCTACCGTAACTTGGTGAAACATACAATTAACAAAATTCTCTTTGCTAGTTGAAACTGTACACATGAATTTCTTGTTTTTATTTCAAACAAGAGAAAAGAGAGGAAATTCGAGTGGAGAGAAAGAAACGATTCCTACAATAAACTTCAGCCATAAAAAATTTGATTTCTGAACGGAAGAAAGGATCGCAACCACTATTGCATGAATCCCAAAAAGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAACAAATTGCAGGTTACA</pcr_primer_p1>
		<pcr_primer_p2>CAGTAACGGTCAATATGATACAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGACCGTTACTG</canonical_amplicon>
		<polymorphic_amplicon>AAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTYAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGACCGTTACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1681</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>130157</contig_pos>
        <strand>+</strand>
        <context>CGTTACTTTA[A/T]AACTAGAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTA</left_flank>
        <right_flank>AACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAACTGATGAATCCAACAAAAAATGCACTGCAAATCTTAATCAATAACAATTCAAATAGAATGTTTCTACAGAAAACTTGAAAAATCCCTAAAAAGTTTTAGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGACCGTTACTGTAGTTGCAACTACTCGAAATAGATTTTTAATATCAAAAAATGACGGCTGTGCCGGAGTATATTATCAGAACAAAGCTGAAAAGCACACAGTGTAAAATTGATGCTACCGTAACTTGGTGAAACATACAATTAACAAAATTCTCTTTGCTAGTTGAAACTGTACACATGAATTTCTTGTTTTTATTTCAAACAAGAGAAAAGAGAGGAAATTCGAGTGGAGAGAAAGAAACGATTCCTACAATAAACTTCAGCCATAAAAAATTTGATTTCTGAACGGAAGAAAGGATCGCAACCA</canonical>
            <polymorphic>TTAACTGATGAATCCAACAAAAAATGCACTGCAAATCTTAATCAATAACAATTCAAATAGAATGTTTCTACAGAAAACTTGAAAAATCCCTAAAAAGTTTTAGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAWAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGACCGTTACTGTAGTTGCAACTACTCGAAATAGATTTTTAATATCAAAAAATGACGGCTGTGCCGGAGTATATTATCAGAACAAAGCTGAAAAGCACACAGTGTAAAATTGATGCTACCGTAACTTGGTGAAACATACAATTAACAAAATTCTCTTTGCTAGTTGAAACTGTACACATGAATTTCTTGTTTTTATTTCAAACAAGAGAAAAGAGAGGAAATTCGAGTGGAGAGAAAGAAACGATTCCTACAATAAACTTCAGCCATAAAAAATTTGATTTCTGAACGGAAGAAAGGATCGCAACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>444 165 147 103 88 37 15 1</canonical_bands>
                <polymorphic_bands>444 165 162 103 88 37 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTATACAGTTTCCCAGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CGAAGACTAAATTTTTATTTCCTAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCG</canonical_amplicon>
		<polymorphic_amplicon>AATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAWAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1682</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>130141</contig_pos>
        <strand>+</strand>
        <context>ACAAACGTTT[A/G]ATGTTCGTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTT</left_flank>
        <right_flank>ATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCGAATAGTAGGAAATTAACTGATGAATCCAACAAAAAATGCACTGCAAATCTTAATCAATAACAATTCAAATAGAATGTTTCTACAGAAAACTTGAAAAATCCCTAAAAAGTTTTAGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGACCGTTACTGTAGTTGCAACTACTCGAAATAGATTTTTAATATCAAAAAATGACGGCTGTGCCGGAGTATATTATCAGAACAAAGCTGAAAAGCACACAGTGTAAAATTGATGCTACCGTAACTTGGTGAAACATACAATTAACAAAATTCTCTTTGCTAGTTGAAACTGTACACATGAATTTCTTGTTTTTATTTCAAACAAGAGAAAAGAGAGGAAATTCGAGTGGAGAGAAAGAAACGATTCCTACAATAAACTTCAGCCATAAAAAATTTGATTTCTGAACGGAA</canonical>
            <polymorphic>AGCGAATAGTAGGAAATTAACTGATGAATCCAACAAAAAATGCACTGCAAATCTTAATCAATAACAATTCAAATAGAATGTTTCTACAGAAAACTTGAAAAATCCCTAAAAAGTTTTAGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTRATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGACCGTTACTGTAGTTGCAACTACTCGAAATAGATTTTTAATATCAAAAAATGACGGCTGTGCCGGAGTATATTATCAGAACAAAGCTGAAAAGCACACAGTGTAAAATTGATGCTACCGTAACTTGGTGAAACATACAATTAACAAAATTCTCTTTGCTAGTTGAAACTGTACACATGAATTTCTTGTTTTTATTTCAAACAAGAGAAAAGAGAGGAAATTCGAGTGGAGAGAAAGAAACGATTCCTACAATAAACTTCAGCCATAAAAAATTTGATTTCTGAACGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>444 149 147 103 88 37 17 15</canonical_bands>
                <polymorphic_bands>459 149 147 103 88 37 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTATACAGTTTCCCAGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CGAAGACTAAATTTTTATTTCCTAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCG</canonical_amplicon>
		<polymorphic_amplicon>AATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTRATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1683</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>130112</contig_pos>
        <strand>+</strand>
        <context>TTGAAAATTT[C/T]AAGAACAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTT</left_flank>
        <right_flank>AAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATTGGTGTCAATGTAAAGCCGATAGAGAGCGAATAGTAGGAAATTAACTGATGAATCCAACAAAAAATGCACTGCAAATCTTAATCAATAACAATTCAAATAGAATGTTTCTACAGAAAACTTGAAAAATCCCTAAAAAGTTTTAGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGACCGTTACTGTAGTTGCAACTACTCGAAATAGATTTTTAATATCAAAAAATGACGGCTGTGCCGGAGTATATTATCAGAACAAAGCTGAAAAGCACACAGTGTAAAATTGATGCTACCGTAACTTGGTGAAACATACAATTAACAAAATTCTCTTTGCTAGTTGAAACTGTACACATGAATTTCTTGTTTTTATTTCAAACAAGAGAAAAGAGAGGAAATTCGAGTGGAGAGAAAGAAACGATTCCTACAATAAACTTCA</canonical>
            <polymorphic>CAATTGGTGTCAATGTAAAGCCGATAGAGAGCGAATAGTAGGAAATTAACTGATGAATCCAACAAAAAATGCACTGCAAATCTTAATCAATAACAATTCAAATAGAATGTTTCTACAGAAAACTTGAAAAATCCCTAAAAAGTTTTAGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTYAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGACCGTTACTGTAGTTGCAACTACTCGAAATAGATTTTTAATATCAAAAAATGACGGCTGTGCCGGAGTATATTATCAGAACAAAGCTGAAAAGCACACAGTGTAAAATTGATGCTACCGTAACTTGGTGAAACATACAATTAACAAAATTCTCTTTGCTAGTTGAAACTGTACACATGAATTTCTTGTTTTTATTTCAAACAAGAGAAAAGAGAGGAAATTCGAGTGGAGAGAAAGAAACGATTCCTACAATAAACTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>285 284 215 209 7</canonical_bands>
                <polymorphic_bands>424 285 284 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTATACAGTTTCCCAGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CGAAGACTAAATTTTTATTTCCTAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCG</canonical_amplicon>
		<polymorphic_amplicon>AATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTYAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1684</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>130080</contig_pos>
        <strand>+</strand>
        <context>GTTCCRAAAA[G/T]TGTGACTCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAA</left_flank>
        <right_flank>TGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGAAAAAAACTGGCCGTTTTGAGTCGTTTGCAATTGGTGTCAATGTAAAGCCGATAGAGAGCGAATAGTAGGAAATTAACTGATGAATCCAACAAAAAATGCACTGCAAATCTTAATCAATAACAATTCAAATAGAATGTTTCTACAGAAAACTTGAAAAATCCCTAAAAAGTTTTAGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGACCGTTACTGTAGTTGCAACTACTCGAAATAGATTTTTAATATCAAAAAATGACGGCTGTGCCGGAGTATATTATCAGAACAAAGCTGAAAAGCACACAGTGTAAAATTGATGCTACCGTAACTTGGTGAAACATACAATTAACAAAATTCTCTTTGCTAGTTGAAACTGTACACATGAATTTCTTGTTTTTATTTCAAACAAGAGAAAAGAGAGGAAATTCGAGTGG</canonical>
            <polymorphic>ATGGAAAAAAACTGGCCGTTTTGAGTCGTTTGCAATTGGTGTCAATGTAAAGCCGATAGAGAGCGAATAGTAGGAAATTAACTGATGAATCCAACAAAAAATGCACTGCAAATCTTAATCAATAACAATTCAAATAGAATGTTTCTACAGAAAACTTGAAAAATCCCTAAAAAGTTTTAGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAAKTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGACCGTTACTGTAGTTGCAACTACTCGAAATAGATTTTTAATATCAAAAAATGACGGCTGTGCCGGAGTATATTATCAGAACAAAGCTGAAAAGCACACAGTGTAAAATTGATGCTACCGTAACTTGGTGAAACATACAATTAACAAAATTCTCTTTGCTAGTTGAAACTGTACACATGAATTTCTTGTTTTTATTTCAAACAAGAGAAAAGAGAGGAAATTCGAGTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>172 141 105 91 70 66 51 42 39 33 32 32 26 24 21 14 13 11 9 8</canonical_bands>
                <polymorphic_bands>172 141 126 91 70 66 51 42 39 33 32 32 26 24 14 13 11 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTATACAGTTTCCCAGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CGAAGACTAAATTTTTATTTCCTAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCG</canonical_amplicon>
		<polymorphic_amplicon>AATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAAKTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1685</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>130075</contig_pos>
        <strand>+</strand>
        <context>TTACGGTTCC[A/G]AAAAKTGTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCC</left_flank>
        <right_flank>AAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACGAATGGAAAAAAACTGGCCGTTTTGAGTCGTTTGCAATTGGTGTCAATGTAAAGCCGATAGAGAGCGAATAGTAGGAAATTAACTGATGAATCCAACAAAAAATGCACTGCAAATCTTAATCAATAACAATTCAAATAGAATGTTTCTACAGAAAACTTGAAAAATCCCTAAAAAGTTTTAGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGACCGTTACTGTAGTTGCAACTACTCGAAATAGATTTTTAATATCAAAAAATGACGGCTGTGCCGGAGTATATTATCAGAACAAAGCTGAAAAGCACACAGTGTAAAATTGATGCTACCGTAACTTGGTGAAACATACAATTAACAAAATTCTCTTTGCTAGTTGAAACTGTACACATGAATTTCTTGTTTTTATTTCAAACAAGAGAAAAGAGAGGAAATTCG</canonical>
            <polymorphic>TACGAATGGAAAAAAACTGGCCGTTTTGAGTCGTTTGCAATTGGTGTCAATGTAAAGCCGATAGAGAGCGAATAGTAGGAAATTAACTGATGAATCCAACAAAAAATGCACTGCAAATCTTAATCAATAACAATTCAAATAGAATGTTTCTACAGAAAACTTGAAAAATCCCTAAAAAGTTTTAGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCRAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGACCGTTACTGTAGTTGCAACTACTCGAAATAGATTTTTAATATCAAAAAATGACGGCTGTGCCGGAGTATATTATCAGAACAAAGCTGAAAAGCACACAGTGTAAAATTGATGCTACCGTAACTTGGTGAAACATACAATTAACAAAATTCTCTTTGCTAGTTGAAACTGTACACATGAATTTCTTGTTTTTATTTCAAACAAGAGAAAAGAGAGGAAATTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>355 271 228 146</canonical_bands>
                <polymorphic_bands>626 228 146</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTATACAGTTTCCCAGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CGAAGACTAAATTTTTATTTCCTAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCG</canonical_amplicon>
		<polymorphic_amplicon>AATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCRAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1686</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>130009</contig_pos>
        <strand>+</strand>
        <context>AATGAGCGTT[C/T]CCACCATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTT</left_flank>
        <right_flank>CCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCACTCTTTTTTTTTCTTTTTTTGACTCAACAGCGGCATCATCTTTTTTTGTGTGTGGGACACATACGAATGGAAAAAAACTGGCCGTTTTGAGTCGTTTGCAATTGGTGTCAATGTAAAGCCGATAGAGAGCGAATAGTAGGAAATTAACTGATGAATCCAACAAAAAATGCACTGCAAATCTTAATCAATAACAATTCAAATAGAATGTTTCTACAGAAAACTTGAAAAATCCCTAAAAAGTTTTAGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGACCGTTACTGTAGTTGCAACTACTCGAAATAGATTTTTAATATCAAAAAATGACGGCTGTGCCGGAGTATATTATCAGAACAAAGCTGAAAAGCACACAGTGTAAAATTGATGCTACCGTAACTTGGTGAAACATACAATTAACAAAATTCTCTTTG</canonical>
            <polymorphic>ATGCACTCTTTTTTTTTCTTTTTTTGACTCAACAGCGGCATCATCTTTTTTTGTGTGTGGGACACATACGAATGGAAAAAAACTGGCCGTTTTGAGTCGTTTGCAATTGGTGTCAATGTAAAGCCGATAGAGAGCGAATAGTAGGAAATTAACTGATGAATCCAACAAAAAATGCACTGCAAATCTTAATCAATAACAATTCAAATAGAATGTTTCTACAGAAAACTTGAAAAATCCCTAAAAAGTTTTAGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTYCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGACCGTTACTGTAGTTGCAACTACTCGAAATAGATTTTTAATATCAAAAAATGACGGCTGTGCCGGAGTATATTATCAGAACAAAGCTGAAAAGCACACAGTGTAAAATTGATGCTACCGTAACTTGGTGAAACATACAATTAACAAAATTCTCTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGAACTGGAAAATTGAAACT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCAAATTTTTACTGGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTYCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1687</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>129853</contig_pos>
        <strand>+</strand>
        <context>AATGGGTTGA[A/G]AATGGAATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGA</left_flank>
        <right_flank>AATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACCCTAAAAGATTTTTCATGAAGCTTTAAAGAAGAAAAGAAACGGCGAGAAAAGAGTAAAAATGGAAAATAGAAAGTCGAGAAACGAGAAAGATGGAATGGTGAGAGACACGACGGAGTAATTGTGGAGGAATAAAGGGAGAACTGTATATGTAATGCACTCTTTTTTTTTCTTTTTTTGACTCAACAGCGGCATCATCTTTTTTTGTGTGTGGGACACATACGAATGGAAAAAAACTGGCCGTTTTGAGTCGTTTGCAATTGGTGTCAATGTAAAGCCGATAGAGAGCGAATAGTAGGAAATTAACTGATGAATCCAACAAAAAATGCACTGCAAATCTTAATCAATAACAATTCAAATAGAATGTTTCTACAGAAAACTTGAAAAATCCCTAAAAAGTTTTAGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGA</canonical>
            <polymorphic>CTACCCTAAAAGATTTTTCATGAAGCTTTAAAGAAGAAAAGAAACGGCGAGAAAAGAGTAAAAATGGAAAATAGAAAGTCGAGAAACGAGAAAGATGGAATGGTGAGAGACACGACGGAGTAATTGTGGAGGAATAAAGGGAGAACTGTATATGTAATGCACTCTTTTTTTTTCTTTTTTTGACTCAACAGCGGCATCATCTTTTTTTGTGTGTGGGACACATACGAATGGAAAAAAACTGGCCGTTTTGAGTCGTTTGCAATTGGTGTCAATGTAAAGCCGATAGAGAGCGAATAGTAGGAAATTAACTGATGAATCCAACAAAAAATGCACTGCAAATCTTAATCAATAACAATTCAAATAGAATGTTTCTACAGAAAACTTGAAAAATCCCTAAAAAGTTTTAGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGARAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCTGGAGCGCCTTTTGTATCATATTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTTGAAAAATCCCTAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>ATAAATTTCCCAACTTTTGATTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAACTTGAAAAATCCCTAAAAAGTTTTAGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTAT</canonical_amplicon>
		<polymorphic_amplicon>AAACTTGAAAAATCCCTAAAAAGTTTTAGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGARAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1688</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>129829</contig_pos>
        <strand>+</strand>
        <context>AGGAAGACTY[C/G]AGAAAGAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTT</left_flank>
        <right_flank>AGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCTTTATTCAAAGAACTCATCCTACCCTAAAAGATTTTTCATGAAGCTTTAAAGAAGAAAAGAAACGGCGAGAAAAGAGTAAAAATGGAAAATAGAAAGTCGAGAAACGAGAAAGATGGAATGGTGAGAGACACGACGGAGTAATTGTGGAGGAATAAAGGGAGAACTGTATATGTAATGCACTCTTTTTTTTTCTTTTTTTGACTCAACAGCGGCATCATCTTTTTTTGTGTGTGGGACACATACGAATGGAAAAAAACTGGCCGTTTTGAGTCGTTTGCAATTGGTGTCAATGTAAAGCCGATAGAGAGCGAATAGTAGGAAATTAACTGATGAATCCAACAAAAAATGCACTGCAAATCTTAATCAATAACAATTCAAATAGAATGTTTCTACAGAAAACTTGAAAAATCCCTAAAAAGTTTTAGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCT</canonical>
            <polymorphic>ATTTCTTTATTCAAAGAACTCATCCTACCCTAAAAGATTTTTCATGAAGCTTTAAAGAAGAAAAGAAACGGCGAGAAAAGAGTAAAAATGGAAAATAGAAAGTCGAGAAACGAGAAAGATGGAATGGTGAGAGACACGACGGAGTAATTGTGGAGGAATAAAGGGAGAACTGTATATGTAATGCACTCTTTTTTTTTCTTTTTTTGACTCAACAGCGGCATCATCTTTTTTTGTGTGTGGGACACATACGAATGGAAAAAAACTGGCCGTTTTGAGTCGTTTGCAATTGGTGTCAATGTAAAGCCGATAGAGAGCGAATAGTAGGAAATTAACTGATGAATCCAACAAAAAATGCACTGCAAATCTTAATCAATAACAATTCAAATAGAATGTTTCTACAGAAAACTTGAAAAATCCCTAAAAAGTTTTAGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTSAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTTGAAAAATCCCTAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>ATAAATTTCCCAACTTTTGATTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAACTTGAAAAATCCCTAAAAAGTTTTAGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTAT</canonical_amplicon>
		<polymorphic_amplicon>AAACTTGAAAAATCCCTAAAAAGTTTTAGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTSAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1689</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>129828</contig_pos>
        <strand>+</strand>
        <context>TAGGAAGACT[C/T]SAGAAAGAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACT</left_flank>
        <right_flank>GAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTCTTTATTCAAAGAACTCATCCTACCCTAAAAGATTTTTCATGAAGCTTTAAAGAAGAAAAGAAACGGCGAGAAAAGAGTAAAAATGGAAAATAGAAAGTCGAGAAACGAGAAAGATGGAATGGTGAGAGACACGACGGAGTAATTGTGGAGGAATAAAGGGAGAACTGTATATGTAATGCACTCTTTTTTTTTCTTTTTTTGACTCAACAGCGGCATCATCTTTTTTTGTGTGTGGGACACATACGAATGGAAAAAAACTGGCCGTTTTGAGTCGTTTGCAATTGGTGTCAATGTAAAGCCGATAGAGAGCGAATAGTAGGAAATTAACTGATGAATCCAACAAAAAATGCACTGCAAATCTTAATCAATAACAATTCAAATAGAATGTTTCTACAGAAAACTTGAAAAATCCCTAAAAAGTTTTAGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTC</canonical>
            <polymorphic>CATTTCTTTATTCAAAGAACTCATCCTACCCTAAAAGATTTTTCATGAAGCTTTAAAGAAGAAAAGAAACGGCGAGAAAAGAGTAAAAATGGAAAATAGAAAGTCGAGAAACGAGAAAGATGGAATGGTGAGAGACACGACGGAGTAATTGTGGAGGAATAAAGGGAGAACTGTATATGTAATGCACTCTTTTTTTTTCTTTTTTTGACTCAACAGCGGCATCATCTTTTTTTGTGTGTGGGACACATACGAATGGAAAAAAACTGGCCGTTTTGAGTCGTTTGCAATTGGTGTCAATGTAAAGCCGATAGAGAGCGAATAGTAGGAAATTAACTGATGAATCCAACAAAAAATGCACTGCAAATCTTAATCAATAACAATTCAAATAGAATGTTTCTACAGAAAACTTGAAAAATCCCTAAAAAGTTTTAGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTYGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCAATAGGATATAGAGAAACGTATATTTCAGTTGATTTTTAATTATTTTTACCGAATTCAAGAGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTTGAAAAATCCCTAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>ATAAATTTCCCAACTTTTGATTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAACTTGAAAAATCCCTAAAAAGTTTTAGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTAT</canonical_amplicon>
		<polymorphic_amplicon>AAACTTGAAAAATCCCTAAAAAGTTTTAGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTYGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1690</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>206977</contig_pos>
        <strand>+</strand>
        <context>ACGCCCCAAT[A/T]GCCGCTCCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGACCACGTATCATCCGAAAGAACGCTGGAGTCAATACGGACGCCCCAAT</left_flank>
        <right_flank>GCCGCTCCAGCTCCAAAGGTAAGCCAAAAGCTGGATCACAAAGCTACTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTAAGAAGGCATTCCCTAATTTCTTTTCCAGCATGCCTTAATAGATTTTTCTCCACGTTTTTAATTAATTAATGCAAAAATATGTCCAAAGCTGTCATTGTTTTCCAAATTTCCAGACACACTAAACTACGGTATCACTCATTTTGATTGTATTTTTTTCTGCTAAAAATGAAAAATTCGTGTCGTTTTATGGCGAGTCTTAAAGCAAAATCACAGTCAAAACGAGTGATACCGTAATTTAATATTTCTCGAAGTCTGAAAAACAACGTGAGTTTCAGATAGCGTTCTCCAGAAATTTTTTTTTAATGCGAAAGTGAAATTTTATTTTAAGCAGCATCTTTTCAGGTAATAAGAAGCTGTAAGATGTCTCCAGCAGATTCTATGGAGTGTTTTTCTACATGTAGCTCTTTATATTCAAGTGACTCCGAAGAGGAGGTCGTCATCAAGAGACCACGTATCATCCGAAAGAACGCTGGAGTCAATACGGACGCCCCAATAGCCGCTCCAGCTCCAAAGGTAAGCCAAAAGCTGGATCACAAAGCTACTTTTTGTCTTCTTATCTACAGCCAATCGTTTCCGAAGGAGTTATCCGTGTGGTTCCTCTTCGTCCGGTCTTCACTGTTCAATTAATTCCATATCAGAAACACAAGGAATTTGACAAGAAGGCACCAGAGTTCCCAACTCCAATTGAAGAATACCATGGAATTCCAGTGGATCTTACTAACGTATGTGTGTCCTATTTTTGAATCAGTTTGATAATGAATAATTTCAGGTTCAACCTCCACAAATTGACACTCAAGAGCAACTTCGTATTCAACGAATGAGAAAGTGTCGTCTTTTTGAGTATCTGACCGAGGAACAATACCGAATCGTTTGGCATTCGGTCCGTGCTGATGGAGAGGAGCCTAATGTCAAATATTCGGTTCCATTCACTACGGATAAAAGCAATTTTCTTGCAAATGGAGTAAGTTGATCCTTCCCCCGTGACATATGATTTT</canonical>
            <polymorphic>CTTTAAGAAGGCATTCCCTAATTTCTTTTCCAGCATGCCTTAATAGATTTTTCTCCACGTTTTTAATTAATTAATGCAAAAATATGTCCAAAGCTGTCATTGTTTTCCAAATTTCCAGACACACTAAACTACGGTATCACTCATTTTGATTGTATTTTTTTCTGCTAAAAATGAAAAATTCGTGTCGTTTTATGGCGAGTCTTAAAGCAAAATCACAGTCAAAACGAGTGATACCGTAATTTAATATTTCTCGAAGTCTGAAAAACAACGTGAGTTTCAGATAGCGTTCTCCAGAAATTTTTTTTTAATGCGAAAGTGAAATTTTATTTTAAGCAGCATCTTTTCAGGTAATAAGAAGCTGTAAGATGTCTCCAGCAGATTCTATGGAGTGTTTTTCTACATGTAGCTCTTTATATTCAAGTGACTCCGAAGAGGAGGTCGTCATCAAGAGACCACGTATCATCCGAAAGAACGCTGGAGTCAATACGGACGCCCCAATWGCCGCTCCAGCTCCAAAGGTAAGCCAAAAGCTGGATCACAAAGCTACTTTTTGTCTTCTTATCTACAGCCAATCGTTTCCGAAGGAGTTATCCGTGTGGTTCCTCTTCGTCCGGTCTTCACTGTTCAATTAATTCCATATCAGAAACACAAGGAATTTGACAAGAAGGCACCAGAGTTCCCAACTCCAATTGAAGAATACCATGGAATTCCAGTGGATCTTACTAACGTATGTGTGTCCTATTTTTGAATCAGTTTGATAATGAATAATTTCAGGTTCAACCTCCACAAATTGACACTCAAGAGCAACTTCGTATTCAACGAATGAGAAAGTGTCGTCTTTTTGAGTATCTGACCGAGGAACAATACCGAATCGTTTGGCATTCGGTCCGTGCTGATGGAGAGGAGCCTAATGTCAAATATTCGGTTCCATTCACTACGGATAAAAGCAATTTTCTTGCAAATGGAGTAAGTTGATCCTTCCCCCGTGACATATGATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>338 265 95 94 93 48 25 13 13 9 7</canonical_bands>
                <polymorphic_bands>338 265 104 94 93 48 25 13 13 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTTTAAGCAGCATCTTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>GATTGGCTGTAGATAAGAAGACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATTTTAAGCAGCATCTTTTCAGGTAATAAGAAGCTGTAAGATGTCTCCAGCAGATTCTATGGAGTGTTTTTCTACATGTAGCTCTTTATATTCAAGTGACTCCGAAGAGGAGGTCGTCATCAAGAGACCACGTATCATCCGAAAGAACGCTGGAGTCAATACGGACGCCCCAATAGCCGCTCCAGCTCCAAAGGTAAGCCAAAAGCTGGATCACAAAGCTACTTTTTGTCTTCTTATCTACAGCCAATC</canonical_amplicon>
		<polymorphic_amplicon>TATTTTAAGCAGCATCTTTTCAGGTAATAAGAAGCTGTAAGATGTCTCCAGCAGATTCTATGGAGTGTTTTTCTACATGTAGCTCTTTATATTCAAGTGACTCCGAAGAGGAGGTCGTCATCAAGAGACCACGTATCATCCGAAAGAACGCTGGAGTCAATACGGACGCCCCAATWGCCGCTCCAGCTCCAAAGGTAAGCCAAAAGCTGGATCACAAAGCTACTTTTTGTCTTCTTATCTACAGCCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1691</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>206738</contig_pos>
        <strand>+</strand>
        <context>TCGAAGTCTG[A/G]AAAACAACGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCACAGTCAAAACGAGTGATACCGTAATTTAATATTTCTCGAAGTCTG</left_flank>
        <right_flank>AAAACAACGTGAGTTTCAGATAGCGTTCTCCAGAAATTTTTTTTTAATGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATAAACAACCTGCCTTAACTCTTTTTTTTCAAAAAAAAATCACACGAAATTTTTTGAAGTCATTAACTCCTTATTGGCTTTGTTTACTCCTGTTGTCATTGTCACATGAATTTTCCAATGAGTACAATTCTAGTTGTTGACTGGAAATCAGACAAGCCAACTCTTGTTTTCCAAAGAGGGACTAGCTCCGCCTCTTCTCTATCTAGAAGCTGAAGATCTCGTTTTCAGATTAACATACTTTAAGAAGGCATTCCCTAATTTCTTTTCCAGCATGCCTTAATAGATTTTTCTCCACGTTTTTAATTAATTAATGCAAAAATATGTCCAAAGCTGTCATTGTTTTCCAAATTTCCAGACACACTAAACTACGGTATCACTCATTTTGATTGTATTTTTTTCTGCTAAAAATGAAAAATTCGTGTCGTTTTATGGCGAGTCTTAAAGCAAAATCACAGTCAAAACGAGTGATACCGTAATTTAATATTTCTCGAAGTCTGAAAAACAACGTGAGTTTCAGATAGCGTTCTCCAGAAATTTTTTTTTAATGCGAAAGTGAAATTTTATTTTAAGCAGCATCTTTTCAGGTAATAAGAAGCTGTAAGATGTCTCCAGCAGATTCTATGGAGTGTTTTTCTACATGTAGCTCTTTATATTCAAGTGACTCCGAAGAGGAGGTCGTCATCAAGAGACCACGTATCATCCGAAAGAACGCTGGAGTCAATACGGACGCCCCAATAGCCGCTCCAGCTCCAAAGGTAAGCCAAAAGCTGGATCACAAAGCTACTTTTTGTCTTCTTATCTACAGCCAATCGTTTCCGAAGGAGTTATCCGTGTGGTTCCTCTTCGTCCGGTCTTCACTGTTCAATTAATTCCATATCAGAAACACAAGGAATTTGACAAGAAGGCACCAGAGTTCCCAACTCCAATTGAAGAATACCATGGAATTCCAGTGGATCTTACTAACGTATGTGTGTCCTATTTTTGAATCAGTTTGATAA</canonical>
            <polymorphic>AAATAAACAACCTGCCTTAACTCTTTTTTTTCAAAAAAAAATCACACGAAATTTTTTGAAGTCATTAACTCCTTATTGGCTTTGTTTACTCCTGTTGTCATTGTCACATGAATTTTCCAATGAGTACAATTCTAGTTGTTGACTGGAAATCAGACAAGCCAACTCTTGTTTTCCAAAGAGGGACTAGCTCCGCCTCTTCTCTATCTAGAAGCTGAAGATCTCGTTTTCAGATTAACATACTTTAAGAAGGCATTCCCTAATTTCTTTTCCAGCATGCCTTAATAGATTTTTCTCCACGTTTTTAATTAATTAATGCAAAAATATGTCCAAAGCTGTCATTGTTTTCCAAATTTCCAGACACACTAAACTACGGTATCACTCATTTTGATTGTATTTTTTTCTGCTAAAAATGAAAAATTCGTGTCGTTTTATGGCGAGTCTTAAAGCAAAATCACAGTCAAAACGAGTGATACCGTAATTTAATATTTCTCGAAGTCTGRAAAACAACGTGAGTTTCAGATAGCGTTCTCCAGAAATTTTTTTTTAATGCGAAAGTGAAATTTTATTTTAAGCAGCATCTTTTCAGGTAATAAGAAGCTGTAAGATGTCTCCAGCAGATTCTATGGAGTGTTTTTCTACATGTAGCTCTTTATATTCAAGTGACTCCGAAGAGGAGGTCGTCATCAAGAGACCACGTATCATCCGAAAGAACGCTGGAGTCAATACGGACGCCCCAATAGCCGCTCCAGCTCCAAAGGTAAGCCAAAAGCTGGATCACAAAGCTACTTTTTGTCTTCTTATCTACAGCCAATCGTTTCCGAAGGAGTTATCCGTGTGGTTCCTCTTCGTCCGGTCTTCACTGTTCAATTAATTCCATATCAGAAACACAAGGAATTTGACAAGAAGGCACCAGAGTTCCCAACTCCAATTGAAGAATACCATGGAATTCCAGTGGATCTTACTAACGTATGTGTGTCCTATTTTTGAATCAGTTTGATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>269 152 149 119 115 77 62 37 20</canonical_bands>
                <polymorphic_bands>289 152 149 119 115 77 62 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTACGGTATCACTCATTTTG</pcr_primer_p1>
		<pcr_primer_p2>TGGAGACATCTTACAGCTTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAACTACGGTATCACTCATTTTGATTGTATTTTTTTCTGCTAAAAATGAAAAATTCGTGTCGTTTTATGGCGAGTCTTAAAGCAAAATCACAGTCAAAACGAGTGATACCGTAATTTAATATTTCTCGAAGTCTGAAAAACAACGTGAGTTTCAGATAGCGTTCTCCAGAAATTTTTTTTTAATGCGAAAGTGAAATTTTATTTTAAGCAGCATCTTTTCAGGTAATAAGAAGCTGTAAGATGTCTCCA</canonical_amplicon>
		<polymorphic_amplicon>AAACTACGGTATCACTCATTTTGATTGTATTTTTTTCTGCTAAAAATGAAAAATTCGTGTCGTTTTATGGCGAGTCTTAAAGCAAAATCACAGTCAAAACGAGTGATACCGTAATTTAATATTTCTCGAAGTCTGRAAAACAACGTGAGTTTCAGATAGCGTTCTCCAGAAATTTTTTTTTAATGCGAAAGTGAAATTTTATTTTAAGCAGCATCTTTTCAGGTAATAAGAAGCTGTAAGATGTCTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1698</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>218039</contig_pos>
        <strand>+</strand>
        <context>AGTTCGAAAT[A/C]TTCAGGATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTAAATTCTAGGTCGTCCACGTATTCCATCAGTGGACGCAGTTCGAAAT</left_flank>
        <right_flank>TTCAGGATTTTCTGGCTGCCAATAGTGAGGAAGGGAATACTGAGCCGGAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTTCTGTCTCTCAACTAGGTGAAGTGCATATACATATCTACTATTTTTTGTTGTTCATTAAAAGTGACAACACTTGAAAAAACAATCCCTAGCTCTTCGAACTTTCAGACCCTTCAATTGCCCATTCTTTATATCATTTTTTACGGGAAATTCTAAACAAGCAACATTTTGATTCATTTCCCCGTTTGATTATAGAGGCTTATGCATATACTCAAACAACAACTCTCTTTTTTTGTTTCAAAATGTGTTTTATCGTCCCCCGCTTCTCCCGAATTCCCGTTTATTCCCATCGTTTTTACTGTCAGTTTTCCACCGCCCTCGCTTTTCTTTTTTTTTGGTCTGGGAAAATTTACTTTTTCAGAGATGGGCATTTTACATTTTTGGAAATATTTCACCACTAGTTCACCGGCGTCAGGTAAGTGATTCTTCTCTTTATTGTTCCTATTTTCTAAATTCTAGGTCGTCCACGTATTCCATCAGTGGACGCAGTTCGAAATATTCAGGATTTTCTGGCTGCCAATAGTGAGGAAGGGAATACTGAGCCGGAAATGAATAAGAAACAGGTAATTCGTAGTGGAAGTTTATTTTCCAAGTACAAATTGTTGTGTTAAGGAGAAAAAGGACAAGAAGGAGGAAAGAGGCGAGCCAAAAAAGAAGCTCCTCAAGAATGAGGATACACTGACCATGAAGCAGGTTAGTTTCGTTTGTACACTGGCAAACTTTCCTTGGAAAAAGCTCTAAACTTTGACAGTTTTGATCACATTACATGCTTGTCCAGCTAGAGAGTTTTTCAACTGTTTTGAATAATTTTATAACCACAATTTTTGAACAAAAATTACAACCAGCTAAATTTGTTGAGGATTCGAACCAAAATAGTATTCAGTCTATTTTTCTTATTTCCCAGAGTATAAAACGTCGAAATATCTATTTTCAGACTCAGACAGTCCAAGGAAAAGACCATCGCAGCAACAACCAAGCTGGCAACCTTCTCACGCCAG</canonical>
            <polymorphic>TTGTTCTGTCTCTCAACTAGGTGAAGTGCATATACATATCTACTATTTTTTGTTGTTCATTAAAAGTGACAACACTTGAAAAAACAATCCCTAGCTCTTCGAACTTTCAGACCCTTCAATTGCCCATTCTTTATATCATTTTTTACGGGAAATTCTAAACAAGCAACATTTTGATTCATTTCCCCGTTTGATTATAGAGGCTTATGCATATACTCAAACAACAACTCTCTTTTTTTGTTTCAAAATGTGTTTTATCGTCCCCCGCTTCTCCCGAATTCCCGTTTATTCCCATCGTTTTTACTGTCAGTTTTCCACCGCCCTCGCTTTTCTTTTTTTTTGGTCTGGGAAAATTTACTTTTTCAGAGATGGGCATTTTACATTTTTGGAAATATTTCACCACTAGTTCACCGGCGTCAGGTAAGTGATTCTTCTCTTTATTGTTCCTATTTTCTAAATTCTAGGTCGTCCACGTATTCCATCAGTGGACGCAGTTCGAAATMTTCAGGATTTTCTGGCTGCCAATAGTGAGGAAGGGAATACTGAGCCGGAAATGAATAAGAAACAGGTAATTCGTAGTGGAAGTTTATTTTCCAAGTACAAATTGTTGTGTTAAGGAGAAAAAGGACAAGAAGGAGGAAAGAGGCGAGCCAAAAAAGAAGCTCCTCAAGAATGAGGATACACTGACCATGAAGCAGGTTAGTTTCGTTTGTACACTGGCAAACTTTCCTTGGAAAAAGCTCTAAACTTTGACAGTTTTGATCACATTACATGCTTGTCCAGCTAGAGAGTTTTTCAACTGTTTTGAATAATTTTATAACCACAATTTTTGAACAAAAATTACAACCAGCTAAATTTGTTGAGGATTCGAACCAAAATAGTATTCAGTCTATTTTTCTTATTTCCCAGAGTATAAAACGTCGAAATATCTATTTTCAGACTCAGACAGTCCAAGGAAAAGACCATCGCAGCAACAACCAAGCTGGCAACCTTCTCACGCCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 390 109</canonical_bands>
                <polymorphic_bands>610 390</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGAAAATTTACTTTTTCAGAGA</pcr_primer_p1>
		<pcr_primer_p2>GGAAAATAAACTTCCACTACGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGGAAAATTTACTTTTTCAGAGATGGGCATTTTACATTTTTGGAAATATTTCACCACTAGTTCACCGGCGTCAGGTAAGTGATTCTTCTCTTTATTGTTCCTATTTTCTAAATTCTAGGTCGTCCACGTATTCCATCAGTGGACGCAGTTCGAAATATTCAGGATTTTCTGGCTGCCAATAGTGAGGAAGGGAATACTGAGCCGGAAATGAATAAGAAACAGGTAATTCGTAGTGGAAGTTTATTTTCC</canonical_amplicon>
		<polymorphic_amplicon>GGGAAAATTTACTTTTTCAGAGATGGGCATTTTACATTTTTGGAAATATTTCACCACTAGTTCACCGGCGTCAGGTAAGTGATTCTTCTCTTTATTGTTCCTATTTTCTAAATTCTAGGTCGTCCACGTATTCCATCAGTGGACGCAGTTCGAAATMTTCAGGATTTTCTGGCTGCCAATAGTGAGGAAGGGAATACTGAGCCGGAAATGAATAAGAAACAGGTAATTCGTAGTGGAAGTTTATTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1699</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>217692</contig_pos>
        <strand>+</strand>
        <context>TTACGGGAAA[A/T]TCTAAACAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTTTCAGACCCTTCAATTGCCCATTCTTTATATCATTTTTTACGGGAAA</left_flank>
        <right_flank>TCTAAACAAGCAACATTTTGATTCATTTCCCCGTTTGATTATAGAGGCTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAAAAAACCACACATAAAAAAATTTCAACATTCTCAAAATCCGAAAGCTCTAAGATGTCCGTTTTTGTAAATTTGGATTTACCGAAAATTCTAGAAATTCCTCATTTTGAGAATCACAGATTTCCAAAGTTCCCAAATTTTCGAAAATCCTGAAACTTCAAAAATTCCTGAAACCTAAAAATTTCGAAATTCCGAAAATATAAAAACTTTTTCGAAATTTAATGTTCTTAGTAGGTGTAATACTGTTTTCCTCAAAAACTTTCATACTAAATGCATCATTGGTATTGTTCAAAATGGGGAAATCAAAAGTCTAGTGAACTACCAAAACACATTTATGAAGCCAATTTTGTTCTGTCTCTCAACTAGGTGAAGTGCATATACATATCTACTATTTTTTGTTGTTCATTAAAAGTGACAACACTTGAAAAAACAATCCCTAGCTCTTCGAACTTTCAGACCCTTCAATTGCCCATTCTTTATATCATTTTTTACGGGAAATTCTAAACAAGCAACATTTTGATTCATTTCCCCGTTTGATTATAGAGGCTTATGCATATACTCAAACAACAACTCTCTTTTTTTGTTTCAAAATGTGTTTTATCGTCCCCCGCTTCTCCCGAATTCCCGTTTATTCCCATCGTTTTTACTGTCAGTTTTCCACCGCCCTCGCTTTTCTTTTTTTTTGGTCTGGGAAAATTTACTTTTTCAGAGATGGGCATTTTACATTTTTGGAAATATTTCACCACTAGTTCACCGGCGTCAGGTAAGTGATTCTTCTCTTTATTGTTCCTATTTTCTAAATTCTAGGTCGTCCACGTATTCCATCAGTGGACGCAGTTCGAAATATTCAGGATTTTCTGGCTGCCAATAGTGAGGAAGGGAATACTGAGCCGGAAATGAATAAGAAACAGGTAATTCGTAGTGGAAGTTTATTTTCCAAGTACAAATTGTTGTGTTAAGGAGAAAAAGGACAAGAAGGAGGAAAGAGGCGAGCCAAAA</canonical>
            <polymorphic>CTAAAAAACCACACATAAAAAAATTTCAACATTCTCAAAATCCGAAAGCTCTAAGATGTCCGTTTTTGTAAATTTGGATTTACCGAAAATTCTAGAAATTCCTCATTTTGAGAATCACAGATTTCCAAAGTTCCCAAATTTTCGAAAATCCTGAAACTTCAAAAATTCCTGAAACCTAAAAATTTCGAAATTCCGAAAATATAAAAACTTTTTCGAAATTTAATGTTCTTAGTAGGTGTAATACTGTTTTCCTCAAAAACTTTCATACTAAATGCATCATTGGTATTGTTCAAAATGGGGAAATCAAAAGTCTAGTGAACTACCAAAACACATTTATGAAGCCAATTTTGTTCTGTCTCTCAACTAGGTGAAGTGCATATACATATCTACTATTTTTTGTTGTTCATTAAAAGTGACAACACTTGAAAAAACAATCCCTAGCTCTTCGAACTTTCAGACCCTTCAATTGCCCATTCTTTATATCATTTTTTACGGGAAAWTCTAAACAAGCAACATTTTGATTCATTTCCCCGTTTGATTATAGAGGCTTATGCATATACTCAAACAACAACTCTCTTTTTTTGTTTCAAAATGTGTTTTATCGTCCCCCGCTTCTCCCGAATTCCCGTTTATTCCCATCGTTTTTACTGTCAGTTTTCCACCGCCCTCGCTTTTCTTTTTTTTTGGTCTGGGAAAATTTACTTTTTCAGAGATGGGCATTTTACATTTTTGGAAATATTTCACCACTAGTTCACCGGCGTCAGGTAAGTGATTCTTCTCTTTATTGTTCCTATTTTCTAAATTCTAGGTCGTCCACGTATTCCATCAGTGGACGCAGTTCGAAATATTCAGGATTTTCTGGCTGCCAATAGTGAGGAAGGGAATACTGAGCCGGAAATGAATAAGAAACAGGTAATTCGTAGTGGAAGTTTATTTTCCAAGTACAAATTGTTGTGTTAAGGAGAAAAAGGACAAGAAGGAGGAAAGAGGCGAGCCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>281 200 123 105 75 49 40 28 27 21 17 17 9 8</canonical_bands>
                <polymorphic_bands>404 200 105 75 49 40 28 27 21 17 17 9 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>127 123 121 114 105 75 54 49 40 33 32 28 27 21 17 17 9 8</canonical_bands>
                <polymorphic_bands>156 127 121 114 105 75 54 49 40 32 28 27 21 17 17 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCAACTAGGTGAAGTGCATA</pcr_primer_p1>
		<pcr_primer_p2>GACGATAAAACACATTTTGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTCAACTAGGTGAAGTGCATATACATATCTACTATTTTTTGTTGTTCATTAAAAGTGACAACACTTGAAAAAACAATCCCTAGCTCTTCGAACTTTCAGACCCTTCAATTGCCCATTCTTTATATCATTTTTTACGGGAAATTCTAAACAAGCAACATTTTGATTCATTTCCCCGTTTGATTATAGAGGCTTATGCATATACTCAAACAACAACTCTCTTTTTTTGTTTCAAAATGTGTTTTATCGTC</canonical_amplicon>
		<polymorphic_amplicon>TCTCAACTAGGTGAAGTGCATATACATATCTACTATTTTTTGTTGTTCATTAAAAGTGACAACACTTGAAAAAACAATCCCTAGCTCTTCGAACTTTCAGACCCTTCAATTGCCCATTCTTTATATCATTTTTTACGGGAAAWTCTAAACAAGCAACATTTTGATTCATTTCCCCGTTTGATTATAGAGGCTTATGCATATACTCAAACAACAACTCTCTTTTTTTGTTTCAAAATGTGTTTTATCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1700</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>265830</contig_pos>
        <strand>-</strand>
        <context>AATTATATTC[A/G/C/T]TTCTCTCTAC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G/C/T</alleles>
        <left_flank>GGAAAAATCACATATTACATCGGAACGTCATCCCTCAAGCAATTATATTC</left_flank>
        <right_flank>TTCTCTCTACTACCGTTGTCCGTTTTTTTTCGTCCAAGCGGTCCCCATAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAACAGTGGTTGTCACGTCGGAAACAAAGCCAGAAGGAGATGTTGAAGAGCCTGATTATGCCCTAGTACCAGCGGAATCAGAAGATGAAAATGCGGCTGCAGCTGTAAAAACCGTACAAAATGAGATTGCAGAGGTTATGGAAGTTCTAGAGGCACCACAGAAGGCAGAGCTAGTGACGATTCCAATGACACACAGTGAGCCGGAAGATCATAAGGTGAGTGGTGTTCCATTTTTTTTTTTGAAACACGCAGTACGGGTATCCTAGACAACCATTCAAATTTTAAATGTTCCTCTTTTTCTGCAAGTTAGAAACTCGGAAAATCAAATCAGTCATCCTAAGTCTTTGGAACTGATAAATTTTTTACAAATATTATAATTCCCTACTTTAGCTTATTAGAAAATTTTTACACTGTCAAAAAAGTTCTTTATATCTATTCAAAAAATCTGGAAAAATCACATATTACATCGGAACGTCATCCCTCAAGCAATTATATTCCTTCTCTCTACTACCGTTGTCCGTTTTTTTTCGTCCAAGCGGTCCCCATATACAACCTACTTTACTTTCACTGGTATCAATGTCGTCATACCAGTTACACGTATGTACTTGATGCATTTTTCGGAGTGTTTGGGGGATGCATCGTGCAACAAGGAGAGAAAACGGGCAAAGTCAAAAAAAGTTATATGAGCGAAAAGCGAGTGCTTTTCCTATTCTCTACATCATTTTCTACCTTTTTTGTAGCTATCTCTTTTCACGATCTGTGTTTAAAACGTTCCTTGTGATTTTCTGAAAGACACTTTTTTATTCATTTTTACAATGCCAACACACAAAAAAGCCAAACCGACGGTCGATATGGATGATGATTATATTGTTTGGTCACGAACAGTTATGCAAATCGGTGAAGATGGTTCCCACCACATCCCCCTCTTCTCTCCGTTATCCCTTCCATTCATTGTTGGAGGTTTTCGTACTCGAAAAAGTGATTGGTTCATAATCGTT</canonical>
            <polymorphic>AGAAACAGTGGTTGTCACGTCGGAAACAAAGCCAGAAGGAGATGTTGAAGAGCCTGATTATGCCCTAGTACCAGCGGAATCAGAAGATGAAAATGCGGCTGCAGCTGTAAAAACCGTACAAAATGAGATTGCAGAGGTTATGGAAGTTCTAGAGGCACCACAGAAGGCAGAGCTAGTGACGATTCCAATGACACACAGTGAGCCGGAAGATCATAAGGTGAGTGGTGTTCCATTTTTTTTTTTGAAACACGCAGTACGGGTATCCTAGACAACCATTCAAATTTTAAATGTTCCTCTTTTTCTGCAAGTTAGAAACTCGGAAAATCAAATCAGTCATCCTAAGTCTTTGGAACTGATAAATTTTTTACAAATATTATAATTCCCTACTTTAGCTTATTAGAAAATTTTTACACTGTCAAAAAAGTTCTTTATATCTATTCAAAAAATCTGGAAAAATCACATATTACATCGGAACGTCATCCCTCAAGCAATTATATTCRTTCTCTCTACTACCGTTGTCCGTTTTTTTTCGTCCAAGCGGTCCCCATATACAACCTACTTTACTTTCACTGGTATCAATGTCGTCATACCAGTTACACGTATGTACTTGATGCATTTTTCGGAGTGTTTGGGGGATGCATCGTGCAACAAGGAGAGAAAACGGGCAAAGTCAAAAAAAGTTATATGAGCGAAAAGCGAGTGCTTTTCCTATTCTCTACATCATTTTCTACCTTTTTTGTAGCTATCTCTTTTCACGATCTGTGTTTAAAACGTTCCTTGTGATTTTCTGAAAGACACTTTTTTATTCATTTTTACAATGCCAACACACAAAAAAGCCAAACCGACGGTCGATATGGATGATGATTATATTGTTTGGTCACGAACAGTTATGCAAATCGGTGAAGATGGTTCCCACCACATCCCCCTCTTCTCTCCGTTATCCCTTCCATTCATTGTTGGAGGTTTTCGTACTCGAAAAAGTGATTGGTTCATAATCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTAAGTCTTTGGAACTGATAAA</pcr_primer_p1>
		<pcr_primer_p2>GACATTGATACCAGTGAAAGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CCTAAGTCTTTGGAACTGATAAATTTTTTACAAATATTATAATTCCCTACTTTAGCTTATTAGAAAATTTTTACACTGTCAAAAAAGTTCTTTATATCTATTCAAAAAATCTGGAAAAATCACATATTACATCGGAACGTCATCCCTCAAGCAATTATATTCCTTCTCTCTACTACCGTTGTCCGTTTTTTTTCGTCCAAGCGGTCCCCATATACAACCTACTTTACTTTCACTGGTATCAATGTC</canonical_amplicon>
		<polymorphic_amplicon>CCTAAGTCTTTGGAACTGATAAATTTTTTACAAATATTATAATTCCCTACTTTAGCTTATTAGAAAATTTTTACACTGTCAAAAAAGTTCTTTATATCTATTCAAAAAATCTGGAAAAATCACATATTACATCGGAACGTCATCCCTCAAGCAATTATATTCRTTCTCTCTACTACCGTTGTCCGTTTTTTTTCGTCCAAGCGGTCCCCATATACAACCTACTTTACTTTCACTGGTATCAATGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1701</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>265660</contig_pos>
        <strand>-</strand>
        <context>GAAAATCAAA[A/T]CAGTCATCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTTAAATGTTCCTCTTTTTCTGCAAGTTAGAAACTCGGAAAATCAAA</left_flank>
        <right_flank>CAGTCATCCTAAGTCTTTGGAACTGATAAATTTTTTACAAATATTATAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGGTGTCGGCGACGATATACAATTGTTGGTGGCTGAGCTCGTCGACCAAGTTGAGCTTGAAAAACCACTCATCGCTACTATTATTCAGATGAACACAACTACCGTGGATAAGCAAGAAGAGGAGATTATTGATGCTACCGGACCAGGTGAAACTACTGTGGAGAAGAAAGAAACAGTGGTTGTCACGTCGGAAACAAAGCCAGAAGGAGATGTTGAAGAGCCTGATTATGCCCTAGTACCAGCGGAATCAGAAGATGAAAATGCGGCTGCAGCTGTAAAAACCGTACAAAATGAGATTGCAGAGGTTATGGAAGTTCTAGAGGCACCACAGAAGGCAGAGCTAGTGACGATTCCAATGACACACAGTGAGCCGGAAGATCATAAGGTGAGTGGTGTTCCATTTTTTTTTTTGAAACACGCAGTACGGGTATCCTAGACAACCATTCAAATTTTAAATGTTCCTCTTTTTCTGCAAGTTAGAAACTCGGAAAATCAAATCAGTCATCCTAAGTCTTTGGAACTGATAAATTTTTTACAAATATTATAATTCCCTACTTTAGCTTATTAGAAAATTTTTACACTGTCAAAAAAGTTCTTTATATCTATTCAAAAAATCTGGAAAAATCACATATTACATCGGAACGTCATCCCTCAAGCAATTATATTCCTTCTCTCTACTACCGTTGTCCGTTTTTTTTCGTCCAAGCGGTCCCCATATACAACCTACTTTACTTTCACTGGTATCAATGTCGTCATACCAGTTACACGTATGTACTTGATGCATTTTTCGGAGTGTTTGGGGGATGCATCGTGCAACAAGGAGAGAAAACGGGCAAAGTCAAAAAAAGTTATATGAGCGAAAAGCGAGTGCTTTTCCTATTCTCTACATCATTTTCTACCTTTTTTGTAGCTATCTCTTTTCACGATCTGTGTTTAAAACGTTCCTTGTGATTTTCTGAAAGACACTTTTTTATTCATTTTTACAATGCCAACACACA</canonical>
            <polymorphic>AGTGGTGTCGGCGACGATATACAATTGTTGGTGGCTGAGCTCGTCGACCAAGTTGAGCTTGAAAAACCACTCATCGCTACTATTATTCAGATGAACACAACTACCGTGGATAAGCAAGAAGAGGAGATTATTGATGCTACCGGACCAGGTGAAACTACTGTGGAGAAGAAAGAAACAGTGGTTGTCACGTCGGAAACAAAGCCAGAAGGAGATGTTGAAGAGCCTGATTATGCCCTAGTACCAGCGGAATCAGAAGATGAAAATGCGGCTGCAGCTGTAAAAACCGTACAAAATGAGATTGCAGAGGTTATGGAAGTTCTAGAGGCACCACAGAAGGCAGAGCTAGTGACGATTCCAATGACACACAGTGAGCCGGAAGATCATAAGGTGAGTGGTGTTCCATTTTTTTTTTTGAAACACGCAGTACGGGTATCCTAGACAACCATTCAAATTTTAAATGTTCCTCTTTTTCTGCAAGTTAGAAACTCGGAAAATCAAAWCAGTCATCCTAAGTCTTTGGAACTGATAAATTTTTTACAAATATTATAATTCCCTACTTTAGCTTATTAGAAAATTTTTACACTGTCAAAAAAGTTCTTTATATCTATTCAAAAAATCTGGAAAAATCACATATTACATCGGAACGTCATCCCTCAAGCAATTATATTCCTTCTCTCTACTACCGTTGTCCGTTTTTTTTCGTCCAAGCGGTCCCCATATACAACCTACTTTACTTTCACTGGTATCAATGTCGTCATACCAGTTACACGTATGTACTTGATGCATTTTTCGGAGTGTTTGGGGGATGCATCGTGCAACAAGGAGAGAAAACGGGCAAAGTCAAAAAAAGTTATATGAGCGAAAAGCGAGTGCTTTTCCTATTCTCTACATCATTTTCTACCTTTTTTGTAGCTATCTCTTTTCACGATCTGTGTTTAAAACGTTCCTTGTGATTTTCTGAAAGACACTTTTTTATTCATTTTTACAATGCCAACACACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTACGGGTATCCTAGACAAC</pcr_primer_p1>
		<pcr_primer_p2>AATATAATTGCTTGAGGGATGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAGTACGGGTATCCTAGACAACCATTCAAATTTTAAATGTTCCTCTTTTTCTGCAAGTTAGAAACTCGGAAAATCAAATCAGTCATCCTAAGTCTTTGGAACTGATAAATTTTTTACAAATATTATAATTCCCTACTTTAGCTTATTAGAAAATTTTTACACTGTCAAAAAAGTTCTTTATATCTATTCAAAAAATCTGGAAAAATCACATATTACATCGGAACGTCATCCCTCAAGCAATTATATT</canonical_amplicon>
		<polymorphic_amplicon>CAGTACGGGTATCCTAGACAACCATTCAAATTTTAAATGTTCCTCTTTTTCTGCAAGTTAGAAACTCGGAAAATCAAAWCAGTCATCCTAAGTCTTTGGAACTGATAAATTTTTTACAAATATTATAATTCCCTACTTTAGCTTATTAGAAAATTTTTACACTGTCAAAAAAGTTCTTTATATCTATTCAAAAAATCTGGAAAAATCACATATTACATCGGAACGTCATCCCTCAAGCAATTATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1704</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>295033</contig_pos>
        <strand>+</strand>
        <context>TACAATTATT[C/T]TTCCTTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAACACCGCTGATTCTTAAAACGCATTCTCAATCAAAATACAATTATT</left_flank>
        <right_flank>TTCCTTTTTTTTCCTTTTTTTAGTACGTCGCCCGTCACCCTGAGTACGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAGATTTGAGACAGATTGATAATTTTTTTGATGAGTTGTGACTCATGATATCTATTTTTATCCTATGCTCACAAATTTGAAGTTCATTTTTAGATCCGATGCAAGTATTTTTGATGATTATTAGCTAAAAAATTGTGAAAATCTCTAAATTCAAAAAAATTTTAGTTGCCGAAATTGGCGAAATTTTTTTGCCGAAATCAGCAACGGCAATTCGGCAACTTTTTCTTTTTGAAAAAAATCGCAAAAAAAAAAGTTAAAAACCTAGGAACGTTCAAACACTATTTCGCAGTATTCAACCTAGGCCTGTTATACACCATCCAAAATTTTCAAAACGATCTAAAACTTGACAGTCGAACTCCACACTTCTGAGAATGGTTAAAAAATGAAACGAAACCAACTAAAACACTTTTTCACATGTTTTTCACTGTATTTATATTTTGAAAAACTGAAAACACCGCTGATTCTTAAAACGCATTCTCAATCAAAATACAATTATTTTTCCTTTTTTTTCCTTTTTTTAGTACGTCGCCCGTCACCCTGAGTACGCCTCTAGTTTCAACCTCAACATATCTGAAGAGGAAAGAGCTTGTGTAGCCATTCCAGCTGGGAACGAACTCGACGGAGGACCGCTCGGCAGACAACCAGTGGAGAATCTTTAAGAAAATAATCTTCTTGCTCCTCAATCAATAATTTTGTTCAAACGAATTGTCATTTCAATTTATTTCATTTTCTCATACACTCTTAAATCACCGCTGTACATTTAAAGCTTTCCAGTTCTACTACACTTATTTGCCTTCACTTTATTTTTCTATACCTGTAGTTAAGAATGCTCAACAGTCCCCTTACAAACCAAACAAAATCATCGTGTATCTTCACTTATTTTGTTATTATTTCTTTGTTTCTCCCTCATTCATAACTTTCCCTGTTTTTTTGACCAATGGGTATAACTTCTATAATGACCTTCCTAACCATGAAAGAATAATCTCCTTTTCCTGAGC</canonical>
            <polymorphic>TAGAGATTTGAGACAGATTGATAATTTTTTTGATGAGTTGTGACTCATGATATCTATTTTTATCCTATGCTCACAAATTTGAAGTTCATTTTTAGATCCGATGCAAGTATTTTTGATGATTATTAGCTAAAAAATTGTGAAAATCTCTAAATTCAAAAAAATTTTAGTTGCCGAAATTGGCGAAATTTTTTTGCCGAAATCAGCAACGGCAATTCGGCAACTTTTTCTTTTTGAAAAAAATCGCAAAAAAAAAAGTTAAAAACCTAGGAACGTTCAAACACTATTTCGCAGTATTCAACCTAGGCCTGTTATACACCATCCAAAATTTTCAAAACGATCTAAAACTTGACAGTCGAACTCCACACTTCTGAGAATGGTTAAAAAATGAAACGAAACCAACTAAAACACTTTTTCACATGTTTTTCACTGTATTTATATTTTGAAAAACTGAAAACACCGCTGATTCTTAAAACGCATTCTCAATCAAAATACAATTATTYTTCCTTTTTTTTCCTTTTTTTAGTACGTCGCCCGTCACCCTGAGTACGCCTCTAGTTTCAACCTCAACATATCTGAAGAGGAAAGAGCTTGTGTAGCCATTCCAGCTGGGAACGAACTCGACGGAGGACCGCTCGGCAGACAACCAGTGGAGAATCTTTAAGAAAATAATCTTCTTGCTCCTCAATCAATAATTTTGTTCAAACGAATTGTCATTTCAATTTATTTCATTTTCTCATACACTCTTAAATCACCGCTGTACATTTAAAGCTTTCCAGTTCTACTACACTTATTTGCCTTCACTTTATTTTTCTATACCTGTAGTTAAGAATGCTCAACAGTCCCCTTACAAACCAAACAAAATCATCGTGTATCTTCACTTATTTTGTTATTATTTCTTTGTTTCTCCCTCATTCATAACTTTCCCTGTTTTTTTGACCAATGGGTATAACTTCTATAATGACCTTCCTAACCATGAAAGAATAATCTCCTTTTCCTGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTGAAAAACTGAAAACACC</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTAAAGATTCTCCACTGGT</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>TATTTTGAAAAACTGAAAACACCGCTGATTCTTAAAACGCATTCTCAATCAAAATACAATTATTTTTCCTTTTTTTTCCTTTTTTTAGTACGTCGCCCGTCACCCTGAGTACGCCTCTAGTTTCAACCTCAACATATCTGAAGAGGAAAGAGCTTGTGTAGCCATTCCAGCTGGGAACGAACTCGACGGAGGACCGCTCGGCAGACAACCAGTGGAGAATCTTTAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TATTTTGAAAAACTGAAAACACCGCTGATTCTTAAAACGCATTCTCAATCAAAATACAATTATTYTTCCTTTTTTTTCCTTTTTTTAGTACGTCGCCCGTCACCCTGAGTACGCCTCTAGTTTCAACCTCAACATATCTGAAGAGGAAAGAGCTTGTGTAGCCATTCCAGCTGGGAACGAACTCGACGGAGGACCGCTCGGCAGACAACCAGTGGAGAATCTTTAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1705</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>295123</contig_pos>
        <strand>+</strand>
        <context>GGAAAGAGCT[C/T]GTGTAGCCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGAGTACGCCTCTAGTTTCAACCTCAACATATCTGAAGAGGAAAGAGCT</left_flank>
        <right_flank>GTGTAGCCATTCCAGCTGGGAACGAACTCGACGGAGGACCGCTCGGCAGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAGATCCGATGCAAGTATTTTTGATGATTATTAGCTAAAAAATTGTGAAAATCTCTAAATTCAAAAAAATTTTAGTTGCCGAAATTGGCGAAATTTTTTTGCCGAAATCAGCAACGGCAATTCGGCAACTTTTTCTTTTTGAAAAAAATCGCAAAAAAAAAAGTTAAAAACCTAGGAACGTTCAAACACTATTTCGCAGTATTCAACCTAGGCCTGTTATACACCATCCAAAATTTTCAAAACGATCTAAAACTTGACAGTCGAACTCCACACTTCTGAGAATGGTTAAAAAATGAAACGAAACCAACTAAAACACTTTTTCACATGTTTTTCACTGTATTTATATTTTGAAAAACTGAAAACACCGCTGATTCTTAAAACGCATTCTCAATCAAAATACAATTATTTTTCCTTTTTTTTCCTTTTTTTAGTACGTCGCCCGTCACCCTGAGTACGCCTCTAGTTTCAACCTCAACATATCTGAAGAGGAAAGAGCTTGTGTAGCCATTCCAGCTGGGAACGAACTCGACGGAGGACCGCTCGGCAGACAACCAGTGGAGAATCTTTAAGAAAATAATCTTCTTGCTCCTCAATCAATAATTTTGTTCAAACGAATTGTCATTTCAATTTATTTCATTTTCTCATACACTCTTAAATCACCGCTGTACATTTAAAGCTTTCCAGTTCTACTACACTTATTTGCCTTCACTTTATTTTTCTATACCTGTAGTTAAGAATGCTCAACAGTCCCCTTACAAACCAAACAAAATCATCGTGTATCTTCACTTATTTTGTTATTATTTCTTTGTTTCTCCCTCATTCATAACTTTCCCTGTTTTTTTGACCAATGGGTATAACTTCTATAATGACCTTCCTAACCATGAAAGAATAATCTCCTTTTCCTGAGCACAGAATTTTTTCCGTTCTAATTCCCATTCATTTCATTCCTTCTCGGTGTTTCAGGAAAAATGTATTTTCGATATTAAGTCTTGGTTTAA</canonical>
            <polymorphic>TTTAGATCCGATGCAAGTATTTTTGATGATTATTAGCTAAAAAATTGTGAAAATCTCTAAATTCAAAAAAATTTTAGTTGCCGAAATTGGCGAAATTTTTTTGCCGAAATCAGCAACGGCAATTCGGCAACTTTTTCTTTTTGAAAAAAATCGCAAAAAAAAAAGTTAAAAACCTAGGAACGTTCAAACACTATTTCGCAGTATTCAACCTAGGCCTGTTATACACCATCCAAAATTTTCAAAACGATCTAAAACTTGACAGTCGAACTCCACACTTCTGAGAATGGTTAAAAAATGAAACGAAACCAACTAAAACACTTTTTCACATGTTTTTCACTGTATTTATATTTTGAAAAACTGAAAACACCGCTGATTCTTAAAACGCATTCTCAATCAAAATACAATTATTTTTCCTTTTTTTTCCTTTTTTTAGTACGTCGCCCGTCACCCTGAGTACGCCTCTAGTTTCAACCTCAACATATCTGAAGAGGAAAGAGCTYGTGTAGCCATTCCAGCTGGGAACGAACTCGACGGAGGACCGCTCGGCAGACAACCAGTGGAGAATCTTTAAGAAAATAATCTTCTTGCTCCTCAATCAATAATTTTGTTCAAACGAATTGTCATTTCAATTTATTTCATTTTCTCATACACTCTTAAATCACCGCTGTACATTTAAAGCTTTCCAGTTCTACTACACTTATTTGCCTTCACTTTATTTTTCTATACCTGTAGTTAAGAATGCTCAACAGTCCCCTTACAAACCAAACAAAATCATCGTGTATCTTCACTTATTTTGTTATTATTTCTTTGTTTCTCCCTCATTCATAACTTTCCCTGTTTTTTTGACCAATGGGTATAACTTCTATAATGACCTTCCTAACCATGAAAGAATAATCTCCTTTTCCTGAGCACAGAATTTTTTCCGTTCTAATTCCCATTCATTTCATTCCTTCTCGGTGTTTCAGGAAAAATGTATTTTCGATATTAAGTCTTGGTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCATTCTCAATCAAAATACAATTA</pcr_primer_p1>
		<pcr_primer_p2>ATTGAAATGACAATTCGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GCATTCTCAATCAAAATACAATTATTTTTCCTTTTTTTTCCTTTTTTTAGTACGTCGCCCGTCACCCTGAGTACGCCTCTAGTTTCAACCTCAACATATCTGAAGAGGAAAGAGCTTGTGTAGCCATTCCAGCTGGGAACGAACTCGACGGAGGACCGCTCGGCAGACAACCAGTGGAGAATCTTTAAGAAAATAATCTTCTTGCTCCTCAATCAATAATTTTGTTCAAACGAATTGTCATTTCAAT</canonical_amplicon>
		<polymorphic_amplicon>GCATTCTCAATCAAAATACAATTATTTTTCCTTTTTTTTCCTTTTTTTAGTACGTCGCCCGTCACCCTGAGTACGCCTCTAGTTTCAACCTCAACATATCTGAAGAGGAAAGAGCTYGTGTAGCCATTCCAGCTGGGAACGAACTCGACGGAGGACCGCTCGGCAGACAACCAGTGGAGAATCTTTAAGAAAATAATCTTCTTGCTCCTCAATCAATAATTTTGTTCAAACGAATTGTCATTTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1706</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>295143</contig_pos>
        <strand>+</strand>
        <context>TTCCAGCTGG[A/G]AACGAACTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACCTCAACATATCTGAAGAGGAAAGAGCTTGTGTAGCCATTCCAGCTGG</left_flank>
        <right_flank>AACGAACTCGACGGAGGACCGCTCGGCAGACAACCAGTGGAGAATCTTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGATGATTATTAGCTAAAAAATTGTGAAAATCTCTAAATTCAAAAAAATTTTAGTTGCCGAAATTGGCGAAATTTTTTTGCCGAAATCAGCAACGGCAATTCGGCAACTTTTTCTTTTTGAAAAAAATCGCAAAAAAAAAAGTTAAAAACCTAGGAACGTTCAAACACTATTTCGCAGTATTCAACCTAGGCCTGTTATACACCATCCAAAATTTTCAAAACGATCTAAAACTTGACAGTCGAACTCCACACTTCTGAGAATGGTTAAAAAATGAAACGAAACCAACTAAAACACTTTTTCACATGTTTTTCACTGTATTTATATTTTGAAAAACTGAAAACACCGCTGATTCTTAAAACGCATTCTCAATCAAAATACAATTATTTTTCCTTTTTTTTCCTTTTTTTAGTACGTCGCCCGTCACCCTGAGTACGCCTCTAGTTTCAACCTCAACATATCTGAAGAGGAAAGAGCTTGTGTAGCCATTCCAGCTGGGAACGAACTCGACGGAGGACCGCTCGGCAGACAACCAGTGGAGAATCTTTAAGAAAATAATCTTCTTGCTCCTCAATCAATAATTTTGTTCAAACGAATTGTCATTTCAATTTATTTCATTTTCTCATACACTCTTAAATCACCGCTGTACATTTAAAGCTTTCCAGTTCTACTACACTTATTTGCCTTCACTTTATTTTTCTATACCTGTAGTTAAGAATGCTCAACAGTCCCCTTACAAACCAAACAAAATCATCGTGTATCTTCACTTATTTTGTTATTATTTCTTTGTTTCTCCCTCATTCATAACTTTCCCTGTTTTTTTGACCAATGGGTATAACTTCTATAATGACCTTCCTAACCATGAAAGAATAATCTCCTTTTCCTGAGCACAGAATTTTTTCCGTTCTAATTCCCATTCATTTCATTCCTTCTCGGTGTTTCAGGAAAAATGTATTTTCGATATTAAGTCTTGGTTTAAGTATTGTACAAGTTAGAAAT</canonical>
            <polymorphic>TTTTGATGATTATTAGCTAAAAAATTGTGAAAATCTCTAAATTCAAAAAAATTTTAGTTGCCGAAATTGGCGAAATTTTTTTGCCGAAATCAGCAACGGCAATTCGGCAACTTTTTCTTTTTGAAAAAAATCGCAAAAAAAAAAGTTAAAAACCTAGGAACGTTCAAACACTATTTCGCAGTATTCAACCTAGGCCTGTTATACACCATCCAAAATTTTCAAAACGATCTAAAACTTGACAGTCGAACTCCACACTTCTGAGAATGGTTAAAAAATGAAACGAAACCAACTAAAACACTTTTTCACATGTTTTTCACTGTATTTATATTTTGAAAAACTGAAAACACCGCTGATTCTTAAAACGCATTCTCAATCAAAATACAATTATTTTTCCTTTTTTTTCCTTTTTTTAGTACGTCGCCCGTCACCCTGAGTACGCCTCTAGTTTCAACCTCAACATATCTGAAGAGGAAAGAGCTTGTGTAGCCATTCCAGCTGGRAACGAACTCGACGGAGGACCGCTCGGCAGACAACCAGTGGAGAATCTTTAAGAAAATAATCTTCTTGCTCCTCAATCAATAATTTTGTTCAAACGAATTGTCATTTCAATTTATTTCATTTTCTCATACACTCTTAAATCACCGCTGTACATTTAAAGCTTTCCAGTTCTACTACACTTATTTGCCTTCACTTTATTTTTCTATACCTGTAGTTAAGAATGCTCAACAGTCCCCTTACAAACCAAACAAAATCATCGTGTATCTTCACTTATTTTGTTATTATTTCTTTGTTTCTCCCTCATTCATAACTTTCCCTGTTTTTTTGACCAATGGGTATAACTTCTATAATGACCTTCCTAACCATGAAAGAATAATCTCCTTTTCCTGAGCACAGAATTTTTTCCGTTCTAATTCCCATTCATTTCATTCCTTCTCGGTGTTTCAGGAAAAATGTATTTTCGATATTAAGTCTTGGTTTAAGTATTGTACAAGTTAGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTCAACCTCAACATATCTGAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGTGAAGGCAAATAAGTGTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTCAACCTCAACATATCTGAAGAGGAAAGAGCTTGTGTAGCCATTCCAGCTGGGAACGAACTCGACGGAGGACCGCTCGGCAGACAACCAGTGGAGAATCTTTAAGAAAATAATCTTCTTGCTCCTCAATCAATAATTTTGTTCAAACGAATTGTCATTTCAATTTATTTCATTTTCTCATACACTCTTAAATCACCGCTGTACATTTAAAGCTTTCCAGTTCTACTACACTTATTTGCCTTCACTTT</canonical_amplicon>
		<polymorphic_amplicon>GTTTCAACCTCAACATATCTGAAGAGGAAAGAGCTTGTGTAGCCATTCCAGCTGGRAACGAACTCGACGGAGGACCGCTCGGCAGACAACCAGTGGAGAATCTTTAAGAAAATAATCTTCTTGCTCCTCAATCAATAATTTTGTTCAAACGAATTGTCATTTCAATTTATTTCATTTTCTCATACACTCTTAAATCACCGCTGTACATTTAAAGCTTTCCAGTTCTACTACACTTATTTGCCTTCACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1707</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>295211</contig_pos>
        <strand>+</strand>
        <context>AATCTTCTTG[C/T]TCCTCAATCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCGCTCGGCAGACAACCAGTGGAGAATCTTTAAGAAAATAATCTTCTTG</left_flank>
        <right_flank>TCCTCAATCAATAATTTTGTTCAAACGAATTGTCATTTCAATTTATTTCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCGAAATTTTTTTGCCGAAATCAGCAACGGCAATTCGGCAACTTTTTCTTTTTGAAAAAAATCGCAAAAAAAAAAGTTAAAAACCTAGGAACGTTCAAACACTATTTCGCAGTATTCAACCTAGGCCTGTTATACACCATCCAAAATTTTCAAAACGATCTAAAACTTGACAGTCGAACTCCACACTTCTGAGAATGGTTAAAAAATGAAACGAAACCAACTAAAACACTTTTTCACATGTTTTTCACTGTATTTATATTTTGAAAAACTGAAAACACCGCTGATTCTTAAAACGCATTCTCAATCAAAATACAATTATTTTTCCTTTTTTTTCCTTTTTTTAGTACGTCGCCCGTCACCCTGAGTACGCCTCTAGTTTCAACCTCAACATATCTGAAGAGGAAAGAGCTTGTGTAGCCATTCCAGCTGGGAACGAACTCGACGGAGGACCGCTCGGCAGACAACCAGTGGAGAATCTTTAAGAAAATAATCTTCTTGCTCCTCAATCAATAATTTTGTTCAAACGAATTGTCATTTCAATTTATTTCATTTTCTCATACACTCTTAAATCACCGCTGTACATTTAAAGCTTTCCAGTTCTACTACACTTATTTGCCTTCACTTTATTTTTCTATACCTGTAGTTAAGAATGCTCAACAGTCCCCTTACAAACCAAACAAAATCATCGTGTATCTTCACTTATTTTGTTATTATTTCTTTGTTTCTCCCTCATTCATAACTTTCCCTGTTTTTTTGACCAATGGGTATAACTTCTATAATGACCTTCCTAACCATGAAAGAATAATCTCCTTTTCCTGAGCACAGAATTTTTTCCGTTCTAATTCCCATTCATTTCATTCCTTCTCGGTGTTTCAGGAAAAATGTATTTTCGATATTAAGTCTTGGTTTAAGTATTGTACAAGTTAGAAATAAATGCTTTTTGGGAAGCACTTTTTGTTTCAAAAAGAATAGAGTTTTAAGATAATAACAATCAGAACA</canonical>
            <polymorphic>GGCGAAATTTTTTTGCCGAAATCAGCAACGGCAATTCGGCAACTTTTTCTTTTTGAAAAAAATCGCAAAAAAAAAAGTTAAAAACCTAGGAACGTTCAAACACTATTTCGCAGTATTCAACCTAGGCCTGTTATACACCATCCAAAATTTTCAAAACGATCTAAAACTTGACAGTCGAACTCCACACTTCTGAGAATGGTTAAAAAATGAAACGAAACCAACTAAAACACTTTTTCACATGTTTTTCACTGTATTTATATTTTGAAAAACTGAAAACACCGCTGATTCTTAAAACGCATTCTCAATCAAAATACAATTATTTTTCCTTTTTTTTCCTTTTTTTAGTACGTCGCCCGTCACCCTGAGTACGCCTCTAGTTTCAACCTCAACATATCTGAAGAGGAAAGAGCTTGTGTAGCCATTCCAGCTGGGAACGAACTCGACGGAGGACCGCTCGGCAGACAACCAGTGGAGAATCTTTAAGAAAATAATCTTCTTGYTCCTCAATCAATAATTTTGTTCAAACGAATTGTCATTTCAATTTATTTCATTTTCTCATACACTCTTAAATCACCGCTGTACATTTAAAGCTTTCCAGTTCTACTACACTTATTTGCCTTCACTTTATTTTTCTATACCTGTAGTTAAGAATGCTCAACAGTCCCCTTACAAACCAAACAAAATCATCGTGTATCTTCACTTATTTTGTTATTATTTCTTTGTTTCTCCCTCATTCATAACTTTCCCTGTTTTTTTGACCAATGGGTATAACTTCTATAATGACCTTCCTAACCATGAAAGAATAATCTCCTTTTCCTGAGCACAGAATTTTTTCCGTTCTAATTCCCATTCATTTCATTCCTTCTCGGTGTTTCAGGAAAAATGTATTTTCGATATTAAGTCTTGGTTTAAGTATTGTACAAGTTAGAAATAAATGCTTTTTGGGAAGCACTTTTTGTTTCAAAAAGAATAGAGTTTTAAGATAATAACAATCAGAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAACATATCTGAAGAGGAAAG</pcr_primer_p1>
		<pcr_primer_p2>AGAAAAATAAAGTGAAGGCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCAACATATCTGAAGAGGAAAGAGCTTGTGTAGCCATTCCAGCTGGGAACGAACTCGACGGAGGACCGCTCGGCAGACAACCAGTGGAGAATCTTTAAGAAAATAATCTTCTTGCTCCTCAATCAATAATTTTGTTCAAACGAATTGTCATTTCAATTTATTTCATTTTCTCATACACTCTTAAATCACCGCTGTACATTTAAAGCTTTCCAGTTCTACTACACTTATTTGCCTTCACTTTATTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>CTCAACATATCTGAAGAGGAAAGAGCTTGTGTAGCCATTCCAGCTGGGAACGAACTCGACGGAGGACCGCTCGGCAGACAACCAGTGGAGAATCTTTAAGAAAATAATCTTCTTGYTCCTCAATCAATAATTTTGTTCAAACGAATTGTCATTTCAATTTATTTCATTTTCTCATACACTCTTAAATCACCGCTGTACATTTAAAGCTTTCCAGTTCTACTACACTTATTTGCCTTCACTTTATTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1708</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>295227</contig_pos>
        <strand>+</strand>
        <context>AATCAATAAT[A/T]TTGTTCAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCAGTGGAGAATCTTTAAGAAAATAATCTTCTTGCTCCTCAATCAATAAT</left_flank>
        <right_flank>TTGTTCAAACGAATTGTCATTTCAATTTATTTCATTTTCTCATACACTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAAATCAGCAACGGCAATTCGGCAACTTTTTCTTTTTGAAAAAAATCGCAAAAAAAAAAGTTAAAAACCTAGGAACGTTCAAACACTATTTCGCAGTATTCAACCTAGGCCTGTTATACACCATCCAAAATTTTCAAAACGATCTAAAACTTGACAGTCGAACTCCACACTTCTGAGAATGGTTAAAAAATGAAACGAAACCAACTAAAACACTTTTTCACATGTTTTTCACTGTATTTATATTTTGAAAAACTGAAAACACCGCTGATTCTTAAAACGCATTCTCAATCAAAATACAATTATTTTTCCTTTTTTTTCCTTTTTTTAGTACGTCGCCCGTCACCCTGAGTACGCCTCTAGTTTCAACCTCAACATATCTGAAGAGGAAAGAGCTTGTGTAGCCATTCCAGCTGGGAACGAACTCGACGGAGGACCGCTCGGCAGACAACCAGTGGAGAATCTTTAAGAAAATAATCTTCTTGCTCCTCAATCAATAATTTTGTTCAAACGAATTGTCATTTCAATTTATTTCATTTTCTCATACACTCTTAAATCACCGCTGTACATTTAAAGCTTTCCAGTTCTACTACACTTATTTGCCTTCACTTTATTTTTCTATACCTGTAGTTAAGAATGCTCAACAGTCCCCTTACAAACCAAACAAAATCATCGTGTATCTTCACTTATTTTGTTATTATTTCTTTGTTTCTCCCTCATTCATAACTTTCCCTGTTTTTTTGACCAATGGGTATAACTTCTATAATGACCTTCCTAACCATGAAAGAATAATCTCCTTTTCCTGAGCACAGAATTTTTTCCGTTCTAATTCCCATTCATTTCATTCCTTCTCGGTGTTTCAGGAAAAATGTATTTTCGATATTAAGTCTTGGTTTAAGTATTGTACAAGTTAGAAATAAATGCTTTTTGGGAAGCACTTTTTGTTTCAAAAAGAATAGAGTTTTAAGATAATAACAATCAGAACATGGAAGCAGTTCATTT</canonical>
            <polymorphic>CGAAATCAGCAACGGCAATTCGGCAACTTTTTCTTTTTGAAAAAAATCGCAAAAAAAAAAGTTAAAAACCTAGGAACGTTCAAACACTATTTCGCAGTATTCAACCTAGGCCTGTTATACACCATCCAAAATTTTCAAAACGATCTAAAACTTGACAGTCGAACTCCACACTTCTGAGAATGGTTAAAAAATGAAACGAAACCAACTAAAACACTTTTTCACATGTTTTTCACTGTATTTATATTTTGAAAAACTGAAAACACCGCTGATTCTTAAAACGCATTCTCAATCAAAATACAATTATTTTTCCTTTTTTTTCCTTTTTTTAGTACGTCGCCCGTCACCCTGAGTACGCCTCTAGTTTCAACCTCAACATATCTGAAGAGGAAAGAGCTTGTGTAGCCATTCCAGCTGGGAACGAACTCGACGGAGGACCGCTCGGCAGACAACCAGTGGAGAATCTTTAAGAAAATAATCTTCTTGCTCCTCAATCAATAATWTTGTTCAAACGAATTGTCATTTCAATTTATTTCATTTTCTCATACACTCTTAAATCACCGCTGTACATTTAAAGCTTTCCAGTTCTACTACACTTATTTGCCTTCACTTTATTTTTCTATACCTGTAGTTAAGAATGCTCAACAGTCCCCTTACAAACCAAACAAAATCATCGTGTATCTTCACTTATTTTGTTATTATTTCTTTGTTTCTCCCTCATTCATAACTTTCCCTGTTTTTTTGACCAATGGGTATAACTTCTATAATGACCTTCCTAACCATGAAAGAATAATCTCCTTTTCCTGAGCACAGAATTTTTTCCGTTCTAATTCCCATTCATTTCATTCCTTCTCGGTGTTTCAGGAAAAATGTATTTTCGATATTAAGTCTTGGTTTAAGTATTGTACAAGTTAGAAATAAATGCTTTTTGGGAAGCACTTTTTGTTTCAAAAAGAATAGAGTTTTAAGATAATAACAATCAGAACATGGAAGCAGTTCATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>287 198 175 169 113 16 15 15 12</canonical_bands>
                <polymorphic_bands>287 213 175 169 113 16 15 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAACATATCTGAAGAGGAAAG</pcr_primer_p1>
		<pcr_primer_p2>AGAAAAATAAAGTGAAGGCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCAACATATCTGAAGAGGAAAGAGCTTGTGTAGCCATTCCAGCTGGGAACGAACTCGACGGAGGACCGCTCGGCAGACAACCAGTGGAGAATCTTTAAGAAAATAATCTTCTTGCTCCTCAATCAATAATTTTGTTCAAACGAATTGTCATTTCAATTTATTTCATTTTCTCATACACTCTTAAATCACCGCTGTACATTTAAAGCTTTCCAGTTCTACTACACTTATTTGCCTTCACTTTATTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>CTCAACATATCTGAAGAGGAAAGAGCTTGTGTAGCCATTCCAGCTGGGAACGAACTCGACGGAGGACCGCTCGGCAGACAACCAGTGGAGAATCTTTAAGAAAATAATCTTCTTGCTCCTCAATCAATAATWTTGTTCAAACGAATTGTCATTTCAATTTATTTCATTTTCTCATACACTCTTAAATCACCGCTGTACATTTAAAGCTTTCCAGTTCTACTACACTTATTTGCCTTCACTTTATTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1709</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>295411</contig_pos>
        <strand>+</strand>
        <context>TGTATCTTCA[C/T]TTATTTTGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGCTCAACAGTCCCCTTACAAACCAAACAAAATCATCGTGTATCTTCA</left_flank>
        <right_flank>TTATTTTGTTATTATTTCTTTGTTTCTCCCTCATTCATAACTTTCCCTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAAAATGAAACGAAACCAACTAAAACACTTTTTCACATGTTTTTCACTGTATTTATATTTTGAAAAACTGAAAACACCGCTGATTCTTAAAACGCATTCTCAATCAAAATACAATTATTTTTCCTTTTTTTTCCTTTTTTTAGTACGTCGCCCGTCACCCTGAGTACGCCTCTAGTTTCAACCTCAACATATCTGAAGAGGAAAGAGCTTGTGTAGCCATTCCAGCTGGGAACGAACTCGACGGAGGACCGCTCGGCAGACAACCAGTGGAGAATCTTTAAGAAAATAATCTTCTTGCTCCTCAATCAATAATTTTGTTCAAACGAATTGTCATTTCAATTTATTTCATTTTCTCATACACTCTTAAATCACCGCTGTACATTTAAAGCTTTCCAGTTCTACTACACTTATTTGCCTTCACTTTATTTTTCTATACCTGTAGTTAAGAATGCTCAACAGTCCCCTTACAAACCAAACAAAATCATCGTGTATCTTCACTTATTTTGTTATTATTTCTTTGTTTCTCCCTCATTCATAACTTTCCCTGTTTTTTTGACCAATGGGTATAACTTCTATAATGACCTTCCTAACCATGAAAGAATAATCTCCTTTTCCTGAGCACAGAATTTTTTCCGTTCTAATTCCCATTCATTTCATTCCTTCTCGGTGTTTCAGGAAAAATGTATTTTCGATATTAAGTCTTGGTTTAAGTATTGTACAAGTTAGAAATAAATGCTTTTTGGGAAGCACTTTTTGTTTCAAAAAGAATAGAGTTTTAAGATAATAACAATCAGAACATGGAAGCAGTTCATTTATCAAACCACAATGTTTCCTGATTGCTTCCCGGTTAGGGCAAAGCTCAGAAAAAAAAACCACGAAATAATGGATTTCATTGTGCCGAATGAACTGGACATCATTGAGCACTCACTGTTTTCAAATTTCAAACTTTATGGGATCACACTTCATGTGTTTGACATACATATATCCTGGTCATGACC</canonical>
            <polymorphic>TAAAAAATGAAACGAAACCAACTAAAACACTTTTTCACATGTTTTTCACTGTATTTATATTTTGAAAAACTGAAAACACCGCTGATTCTTAAAACGCATTCTCAATCAAAATACAATTATTTTTCCTTTTTTTTCCTTTTTTTAGTACGTCGCCCGTCACCCTGAGTACGCCTCTAGTTTCAACCTCAACATATCTGAAGAGGAAAGAGCTTGTGTAGCCATTCCAGCTGGGAACGAACTCGACGGAGGACCGCTCGGCAGACAACCAGTGGAGAATCTTTAAGAAAATAATCTTCTTGCTCCTCAATCAATAATTTTGTTCAAACGAATTGTCATTTCAATTTATTTCATTTTCTCATACACTCTTAAATCACCGCTGTACATTTAAAGCTTTCCAGTTCTACTACACTTATTTGCCTTCACTTTATTTTTCTATACCTGTAGTTAAGAATGCTCAACAGTCCCCTTACAAACCAAACAAAATCATCGTGTATCTTCAYTTATTTTGTTATTATTTCTTTGTTTCTCCCTCATTCATAACTTTCCCTGTTTTTTTGACCAATGGGTATAACTTCTATAATGACCTTCCTAACCATGAAAGAATAATCTCCTTTTCCTGAGCACAGAATTTTTTCCGTTCTAATTCCCATTCATTTCATTCCTTCTCGGTGTTTCAGGAAAAATGTATTTTCGATATTAAGTCTTGGTTTAAGTATTGTACAAGTTAGAAATAAATGCTTTTTGGGAAGCACTTTTTGTTTCAAAAAGAATAGAGTTTTAAGATAATAACAATCAGAACATGGAAGCAGTTCATTTATCAAACCACAATGTTTCCTGATTGCTTCCCGGTTAGGGCAAAGCTCAGAAAAAAAAACCACGAAATAATGGATTTCATTGTGCCGAATGAACTGGACATCATTGAGCACTCACTGTTTTCAAATTTCAAACTTTATGGGATCACACTTCATGTGTTTGACATACATATATCCTGGTCATGACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>124 91 81 80 74 69 56 56 52 48 35 31 30 29 29 26 22 14 11 11 9 8 8 4 2</canonical_bands>
                <polymorphic_bands>132 91 81 80 74 69 56 56 52 48 35 31 30 29 29 26 22 14 11 11 9 8 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGCCTTCACTTTATTTTTCTA</pcr_primer_p1>
		<pcr_primer_p2>GAATGAAATGAATGGGAATTAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTGCCTTCACTTTATTTTTCTATACCTGTAGTTAAGAATGCTCAACAGTCCCCTTACAAACCAAACAAAATCATCGTGTATCTTCACTTATTTTGTTATTATTTCTTTGTTTCTCCCTCATTCATAACTTTCCCTGTTTTTTTGACCAATGGGTATAACTTCTATAATGACCTTCCTAACCATGAAAGAATAATCTCCTTTTCCTGAGCACAGAATTTTTTCCGTTCTAATTCCCATTCATTTCATTC</canonical_amplicon>
		<polymorphic_amplicon>TTTGCCTTCACTTTATTTTTCTATACCTGTAGTTAAGAATGCTCAACAGTCCCCTTACAAACCAAACAAAATCATCGTGTATCTTCAYTTATTTTGTTATTATTTCTTTGTTTCTCCCTCATTCATAACTTTCCCTGTTTTTTTGACCAATGGGTATAACTTCTATAATGACCTTCCTAACCATGAAAGAATAATCTCCTTTTCCTGAGCACAGAATTTTTTCCGTTCTAATTCCCATTCATTTCATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1711</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>299857</contig_pos>
        <strand>+</strand>
        <context>TCAATGTTTT[C/T]CGTTTTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCGATACAGCTTGTCAAACTGACCACTAGAAATGGACATTCAATGTTTT</left_flank>
        <right_flank>CGTTTTTTTTTTCCGTGCTCTGTCAATTCCCCTGTTCGACTTACGTGTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGTAAACTTGGATAATTACCGTATTCGCTCCAGTAGAACGCCACTATTAAGCTATGAGCTGAATCATTTCAATTTATGTCAGCAGCATAGGGAGTTCCAAAGTAAAAAAGAGACGGGGGATTTTTCCGAAGTTTTCAAAAGATACTGTATGCTTTTTGATGTGATAGGGTACAGAGATCGGTGACCACAAATTTCTATCCCATGCAAACCGTGATTCTGTAAATATTCCAAACAATTCCCATAAATTCCAAACAATTCCCTGTCTCCACTCCTTACATTTAGTTTTCACTTTCGTGAAAATAATTTTGAGAAGTGAGAAGAGGCTTAATCAATAATATCGAAACATTACGGTACAGAAAAAGTAATACGGTGATTTCAAATTTTAGGGCATTTGACAGCAACCCGATAACCTTCTTTTGACTTCACTCGTACATCCCGCTACTCTTTTCGATACAGCTTGTCAAACTGACCACTAGAAATGGACATTCAATGTTTTTCGTTTTTTTTTTCCGTGCTCTGTCAATTCCCCTGTTCGACTTACGTGTGATGTGTATGTGTGTGCAGTAGTGGATTTGGCGGTGCTTCCCTCGACCCGCCACATGATTCACTAACATATGCAAATCGGTCTTCCGACGACATGGATGGGAAGGATAGGCAGGAAAGTTGCCTTTTCAGAAAAGGCGAGGCCCAAGTCAGTGGAAGAGATGAAGAAAAGAAAAAAGCAACTCACTTCGATTAGAAAACGTGCATCACTTCAGAAGTCACCAAAAAAAAGGACCAAAACGTATTTCTGCAGATTCCCACCGACGTTTTATATTTTTGATAATTGCGGCCGTTTTTGAACGAATATTTTTATTTTTTACTTTATCTCACGGAAAATTTACAGAACCGTATTCTTTTTTTCTGAAAACAAATAGATCTGAAAGCATAAAAATGCGCTGTCAAATAATTTTTACATTTAAGAGGAAGAACGAATTACCGTATCTTATAAGCCTAT</canonical>
            <polymorphic>TTCTGTAAACTTGGATAATTACCGTATTCGCTCCAGTAGAACGCCACTATTAAGCTATGAGCTGAATCATTTCAATTTATGTCAGCAGCATAGGGAGTTCCAAAGTAAAAAAGAGACGGGGGATTTTTCCGAAGTTTTCAAAAGATACTGTATGCTTTTTGATGTGATAGGGTACAGAGATCGGTGACCACAAATTTCTATCCCATGCAAACCGTGATTCTGTAAATATTCCAAACAATTCCCATAAATTCCAAACAATTCCCTGTCTCCACTCCTTACATTTAGTTTTCACTTTCGTGAAAATAATTTTGAGAAGTGAGAAGAGGCTTAATCAATAATATCGAAACATTACGGTACAGAAAAAGTAATACGGTGATTTCAAATTTTAGGGCATTTGACAGCAACCCGATAACCTTCTTTTGACTTCACTCGTACATCCCGCTACTCTTTTCGATACAGCTTGTCAAACTGACCACTAGAAATGGACATTCAATGTTTTYCGTTTTTTTTTTCCGTGCTCTGTCAATTCCCCTGTTCGACTTACGTGTGATGTGTATGTGTGTGCAGTAGTGGATTTGGCGGTGCTTCCCTCGACCCGCCACATGATTCACTAACATATGCAAATCGGTCTTCCGACGACATGGATGGGAAGGATAGGCAGGAAAGTTGCCTTTTCAGAAAAGGCGAGGCCCAAGTCAGTGGAAGAGATGAAGAAAAGAAAAAAGCAACTCACTTCGATTAGAAAACGTGCATCACTTCAGAAGTCACCAAAAAAAAGGACCAAAACGTATTTCTGCAGATTCCCACCGACGTTTTATATTTTTGATAATTGCGGCCGTTTTTGAACGAATATTTTTATTTTTTACTTTATCTCACGGAAAATTTACAGAACCGTATTCTTTTTTTCTGAAAACAAATAGATCTGAAAGCATAAAAATGCGCTGTCAAATAATTTTTACATTTAAGAGGAAGAACGAATTACCGTATCTTATAAGCCTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTGAGAAGAGGCTTAATCAAT</pcr_primer_p1>
		<pcr_primer_p2>CACATACACATCACACGTAAGTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAGTGAGAAGAGGCTTAATCAATAATATCGAAACATTACGGTACAGAAAAAGTAATACGGTGATTTCAAATTTTAGGGCATTTGACAGCAACCCGATAACCTTCTTTTGACTTCACTCGTACATCCCGCTACTCTTTTCGATACAGCTTGTCAAACTGACCACTAGAAATGGACATTCAATGTTTTTCGTTTTTTTTTTCCGTGCTCTGTCAATTCCCCTGTTCGACTTACGTGTGATGTGTATGTG</canonical_amplicon>
		<polymorphic_amplicon>AAGTGAGAAGAGGCTTAATCAATAATATCGAAACATTACGGTACAGAAAAAGTAATACGGTGATTTCAAATTTTAGGGCATTTGACAGCAACCCGATAACCTTCTTTTGACTTCACTCGTACATCCCGCTACTCTTTTCGATACAGCTTGTCAAACTGACCACTAGAAATGGACATTCAATGTTTTYCGTTTTTTTTTTCCGTGCTCTGTCAATTCCCCTGTTCGACTTACGTGTGATGTGTATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1712</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>299653</contig_pos>
        <strand>+</strand>
        <context>TTTTCACTTT[C/G]GTGAAAATAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAATTCCAAACAATTCCCTGTCTCCACTCCTTACATTTAGTTTTCACTTT</left_flank>
        <right_flank>GTGAAAATAATTTTGAGAAGTGAGAAGAGGCTTAATCAATAATATCGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACTACTTCGAATTACAGCCGGTGTAGTTCTTCAAAAGAGACATGAAACTTTAATCATGCGTTGGCAGTAAATGGCCGAAAATTATGGAGAAAATTCCTCTGATTGATATCCTCTTGTTTTAGTTTTGTGTGAGGTTAAAAGAAATCAAAAACGCGCATTACTTTCTTAACAACCTAATATTTTCAAAACTAGCTTTCAAATTTTCTGTAAACTTGGATAATTACCGTATTCGCTCCAGTAGAACGCCACTATTAAGCTATGAGCTGAATCATTTCAATTTATGTCAGCAGCATAGGGAGTTCCAAAGTAAAAAAGAGACGGGGGATTTTTCCGAAGTTTTCAAAAGATACTGTATGCTTTTTGATGTGATAGGGTACAGAGATCGGTGACCACAAATTTCTATCCCATGCAAACCGTGATTCTGTAAATATTCCAAACAATTCCCATAAATTCCAAACAATTCCCTGTCTCCACTCCTTACATTTAGTTTTCACTTTCGTGAAAATAATTTTGAGAAGTGAGAAGAGGCTTAATCAATAATATCGAAACATTACGGTACAGAAAAAGTAATACGGTGATTTCAAATTTTAGGGCATTTGACAGCAACCCGATAACCTTCTTTTGACTTCACTCGTACATCCCGCTACTCTTTTCGATACAGCTTGTCAAACTGACCACTAGAAATGGACATTCAATGTTTTTCGTTTTTTTTTTCCGTGCTCTGTCAATTCCCCTGTTCGACTTACGTGTGATGTGTATGTGTGTGCAGTAGTGGATTTGGCGGTGCTTCCCTCGACCCGCCACATGATTCACTAACATATGCAAATCGGTCTTCCGACGACATGGATGGGAAGGATAGGCAGGAAAGTTGCCTTTTCAGAAAAGGCGAGGCCCAAGTCAGTGGAAGAGATGAAGAAAAGAAAAAAGCAACTCACTTCGATTAGAAAACGTGCATCACTTCAGAAGTCACCAAAAAAAAGGACCAAAACGTATTTCTG</canonical>
            <polymorphic>TAACTACTTCGAATTACAGCCGGTGTAGTTCTTCAAAAGAGACATGAAACTTTAATCATGCGTTGGCAGTAAATGGCCGAAAATTATGGAGAAAATTCCTCTGATTGATATCCTCTTGTTTTAGTTTTGTGTGAGGTTAAAAGAAATCAAAAACGCGCATTACTTTCTTAACAACCTAATATTTTCAAAACTAGCTTTCAAATTTTCTGTAAACTTGGATAATTACCGTATTCGCTCCAGTAGAACGCCACTATTAAGCTATGAGCTGAATCATTTCAATTTATGTCAGCAGCATAGGGAGTTCCAAAGTAAAAAAGAGACGGGGGATTTTTCCGAAGTTTTCAAAAGATACTGTATGCTTTTTGATGTGATAGGGTACAGAGATCGGTGACCACAAATTTCTATCCCATGCAAACCGTGATTCTGTAAATATTCCAAACAATTCCCATAAATTCCAAACAATTCCCTGTCTCCACTCCTTACATTTAGTTTTCACTTTSGTGAAAATAATTTTGAGAAGTGAGAAGAGGCTTAATCAATAATATCGAAACATTACGGTACAGAAAAAGTAATACGGTGATTTCAAATTTTAGGGCATTTGACAGCAACCCGATAACCTTCTTTTGACTTCACTCGTACATCCCGCTACTCTTTTCGATACAGCTTGTCAAACTGACCACTAGAAATGGACATTCAATGTTTTTCGTTTTTTTTTTCCGTGCTCTGTCAATTCCCCTGTTCGACTTACGTGTGATGTGTATGTGTGTGCAGTAGTGGATTTGGCGGTGCTTCCCTCGACCCGCCACATGATTCACTAACATATGCAAATCGGTCTTCCGACGACATGGATGGGAAGGATAGGCAGGAAAGTTGCCTTTTCAGAAAAGGCGAGGCCCAAGTCAGTGGAAGAGATGAAGAAAAGAAAAAAGCAACTCACTTCGATTAGAAAACGTGCATCACTTCAGAAGTCACCAAAAAAAAGGACCAAAACGTATTTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCGAAGTTTTCAAAAGATAC</pcr_primer_p1>
		<pcr_primer_p2>CACCGTATTACTTTTTCTGTACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCCGAAGTTTTCAAAAGATACTGTATGCTTTTTGATGTGATAGGGTACAGAGATCGGTGACCACAAATTTCTATCCCATGCAAACCGTGATTCTGTAAATATTCCAAACAATTCCCATAAATTCCAAACAATTCCCTGTCTCCACTCCTTACATTTAGTTTTCACTTTCGTGAAAATAATTTTGAGAAGTGAGAAGAGGCTTAATCAATAATATCGAAACATTACGGTACAGAAAAAGTAATACGGTG</canonical_amplicon>
		<polymorphic_amplicon>TTCCGAAGTTTTCAAAAGATACTGTATGCTTTTTGATGTGATAGGGTACAGAGATCGGTGACCACAAATTTCTATCCCATGCAAACCGTGATTCTGTAAATATTCCAAACAATTCCCATAAATTCCAAACAATTCCCTGTCTCCACTCCTTACATTTAGTTTTCACTTTSGTGAAAATAATTTTGAGAAGTGAGAAGAGGCTTAATCAATAATATCGAAACATTACGGTACAGAAAAAGTAATACGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1713</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>302241</contig_pos>
        <strand>+</strand>
        <context>TTTTCGGTGA[A/G]GCACCTACAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTTAATACCAGGCTTCTGCTCAGGCATTTTTTGCGTCTTTTCGGTGA</left_flank>
        <right_flank>GCACCTACAATAAATTTGCGGCACACACACACACGAGCCCACCAACCCAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTGCCGAAAATGTTTAGTTTATTTTCTTTTCTTGTCTGTTTTGTTCTTTTCTCAAGGAAGTACTTTTTGAACTTGAAGCAGGAAATTCCTGGATACAATTTTATCCATCCGGAATCGAATGATCACTCTGAGCAAGAAGATATCTTAAAATTAATCCAAAAATCTGAAATAAGGAACTTCAGCGATCATATGATTTTTGAGCTTGTTTCCATGTCTGATATAAAAACCATAGACATTTTCGAATTGCAACTGATCAAGTTTAGAACACTAGAACGCCGTCTAGACAGTGATATCCAAATTTAGATAGCAGAACTCTCAGACTTATAAAAGCTCAAACATTTTAATACTTCTGAAATTCTCGTCTCCCTTTTCTCACTTCCCACAACTCATTCCTCGCTTTCCAGCCCGAAAAAAAAACAACAATTTCGCCGTGCACTTTCTCGTAAAAATTTAATACCAGGCTTCTGCTCAGGCATTTTTTGCGTCTTTTCGGTGAGGCACCTACAATAAATTTGCGGCACACACACACACGAGCCCACCAACCCATTTTCTCGACCGCTCATCTTTTTCTGTTTTTTTTACCTCTCATTTTTTGGTTTTATTTCGACCCTCTTATTTTTCGGGATCAGTTTTTTCGGGATGATTTTCAAACATCAAAAAATACCTGAGTTATCATCCGTAGTAAACAAAACTATTGAGGACGACGGGCTTTGAGACGAATAACTGATAAGGGCACAAATTTAGAAGCTTTGAAGGATCAAAGTTGAAGGTTCTAGAATAAAAGAGTAGTCGGTGAGGTAGCACTAAATTCAGAATAGTGAGTTTTGGAGAGTTTTCATTAAATCTGGATTTTTCAAGTCATTTTTCGTATGTATATCATAATTTTGGCTATTTTCATTTAGGAAATTTAAAGAAAACAGAATATCAAAAATGGAAAATTAGTTGTCGAGCTATTTTTGTAAGAATTTTGTAAGTCAAGCCACCACACCGCAAAAAA</canonical>
            <polymorphic>CTTTTGCCGAAAATGTTTAGTTTATTTTCTTTTCTTGTCTGTTTTGTTCTTTTCTCAAGGAAGTACTTTTTGAACTTGAAGCAGGAAATTCCTGGATACAATTTTATCCATCCGGAATCGAATGATCACTCTGAGCAAGAAGATATCTTAAAATTAATCCAAAAATCTGAAATAAGGAACTTCAGCGATCATATGATTTTTGAGCTTGTTTCCATGTCTGATATAAAAACCATAGACATTTTCGAATTGCAACTGATCAAGTTTAGAACACTAGAACGCCGTCTAGACAGTGATATCCAAATTTAGATAGCAGAACTCTCAGACTTATAAAAGCTCAAACATTTTAATACTTCTGAAATTCTCGTCTCCCTTTTCTCACTTCCCACAACTCATTCCTCGCTTTCCAGCCCGAAAAAAAAACAACAATTTCGCCGTGCACTTTCTCGTAAAAATTTAATACCAGGCTTCTGCTCAGGCATTTTTTGCGTCTTTTCGGTGARGCACCTACAATAAATTTGCGGCACACACACACACGAGCCCACCAACCCATTTTCTCGACCGCTCATCTTTTTCTGTTTTTTTTACCTCTCATTTTTTGGTTTTATTTCGACCCTCTTATTTTTCGGGATCAGTTTTTTCGGGATGATTTTCAAACATCAAAAAATACCTGAGTTATCATCCGTAGTAAACAAAACTATTGAGGACGACGGGCTTTGAGACGAATAACTGATAAGGGCACAAATTTAGAAGCTTTGAAGGATCAAAGTTGAAGGTTCTAGAATAAAAGAGTAGTCGGTGAGGTAGCACTAAATTCAGAATAGTGAGTTTTGGAGAGTTTTCATTAAATCTGGATTTTTCAAGTCATTTTTCGTATGTATATCATAATTTTGGCTATTTTCATTTAGGAAATTTAAAGAAAACAGAATATCAAAAATGGAAAATTAGTTGTCGAGCTATTTTTGTAAGAATTTTGTAAGTCAAGCCACCACACCGCAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCACTTCCCACAACTC</pcr_primer_p1>
		<pcr_primer_p2>AAATAAGAGGGTCGAAATAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCACTTCCCACAACTCATTCCTCGCTTTCCAGCCCGAAAAAAAAACAACAATTTCGCCGTGCACTTTCTCGTAAAAATTTAATACCAGGCTTCTGCTCAGGCATTTTTTGCGTCTTTTCGGTGAGGCACCTACAATAAATTTGCGGCACACACACACACGAGCCCACCAACCCATTTTCTCGACCGCTCATCTTTTTCTGTTTTTTTTACCTCTCATTTTTTGGTTTTATTTCGACCCTCTTATTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCACTTCCCACAACTCATTCCTCGCTTTCCAGCCCGAAAAAAAAACAACAATTTCGCCGTGCACTTTCTCGTAAAAATTTAATACCAGGCTTCTGCTCAGGCATTTTTTGCGTCTTTTCGGTGARGCACCTACAATAAATTTGCGGCACACACACACACGAGCCCACCAACCCATTTTCTCGACCGCTCATCTTTTTCTGTTTTTTTTACCTCTCATTTTTTGGTTTTATTTCGACCCTCTTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1714</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>302260</contig_pos>
        <strand>+</strand>
        <context>AATAAATTTG[C/T]GGCACACACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCTCAGGCATTTTTTGCGTCTTTTCGGTGAGGCACCTACAATAAATTTG</left_flank>
        <right_flank>GGCACACACACACACGAGCCCACCAACCCATTTTCTCGACCGCTCATCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTATTTTCTTTTCTTGTCTGTTTTGTTCTTTTCTCAAGGAAGTACTTTTTGAACTTGAAGCAGGAAATTCCTGGATACAATTTTATCCATCCGGAATCGAATGATCACTCTGAGCAAGAAGATATCTTAAAATTAATCCAAAAATCTGAAATAAGGAACTTCAGCGATCATATGATTTTTGAGCTTGTTTCCATGTCTGATATAAAAACCATAGACATTTTCGAATTGCAACTGATCAAGTTTAGAACACTAGAACGCCGTCTAGACAGTGATATCCAAATTTAGATAGCAGAACTCTCAGACTTATAAAAGCTCAAACATTTTAATACTTCTGAAATTCTCGTCTCCCTTTTCTCACTTCCCACAACTCATTCCTCGCTTTCCAGCCCGAAAAAAAAACAACAATTTCGCCGTGCACTTTCTCGTAAAAATTTAATACCAGGCTTCTGCTCAGGCATTTTTTGCGTCTTTTCGGTGAGGCACCTACAATAAATTTGCGGCACACACACACACGAGCCCACCAACCCATTTTCTCGACCGCTCATCTTTTTCTGTTTTTTTTACCTCTCATTTTTTGGTTTTATTTCGACCCTCTTATTTTTCGGGATCAGTTTTTTCGGGATGATTTTCAAACATCAAAAAATACCTGAGTTATCATCCGTAGTAAACAAAACTATTGAGGACGACGGGCTTTGAGACGAATAACTGATAAGGGCACAAATTTAGAAGCTTTGAAGGATCAAAGTTGAAGGTTCTAGAATAAAAGAGTAGTCGGTGAGGTAGCACTAAATTCAGAATAGTGAGTTTTGGAGAGTTTTCATTAAATCTGGATTTTTCAAGTCATTTTTCGTATGTATATCATAATTTTGGCTATTTTCATTTAGGAAATTTAAAGAAAACAGAATATCAAAAATGGAAAATTAGTTGTCGAGCTATTTTTGTAAGAATTTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAA</canonical>
            <polymorphic>GTTTATTTTCTTTTCTTGTCTGTTTTGTTCTTTTCTCAAGGAAGTACTTTTTGAACTTGAAGCAGGAAATTCCTGGATACAATTTTATCCATCCGGAATCGAATGATCACTCTGAGCAAGAAGATATCTTAAAATTAATCCAAAAATCTGAAATAAGGAACTTCAGCGATCATATGATTTTTGAGCTTGTTTCCATGTCTGATATAAAAACCATAGACATTTTCGAATTGCAACTGATCAAGTTTAGAACACTAGAACGCCGTCTAGACAGTGATATCCAAATTTAGATAGCAGAACTCTCAGACTTATAAAAGCTCAAACATTTTAATACTTCTGAAATTCTCGTCTCCCTTTTCTCACTTCCCACAACTCATTCCTCGCTTTCCAGCCCGAAAAAAAAACAACAATTTCGCCGTGCACTTTCTCGTAAAAATTTAATACCAGGCTTCTGCTCAGGCATTTTTTGCGTCTTTTCGGTGAGGCACCTACAATAAATTTGYGGCACACACACACACGAGCCCACCAACCCATTTTCTCGACCGCTCATCTTTTTCTGTTTTTTTTACCTCTCATTTTTTGGTTTTATTTCGACCCTCTTATTTTTCGGGATCAGTTTTTTCGGGATGATTTTCAAACATCAAAAAATACCTGAGTTATCATCCGTAGTAAACAAAACTATTGAGGACGACGGGCTTTGAGACGAATAACTGATAAGGGCACAAATTTAGAAGCTTTGAAGGATCAAAGTTGAAGGTTCTAGAATAAAAGAGTAGTCGGTGAGGTAGCACTAAATTCAGAATAGTGAGTTTTGGAGAGTTTTCATTAAATCTGGATTTTTCAAGTCATTTTTCGTATGTATATCATAATTTTGGCTATTTTCATTTAGGAAATTTAAAGAAAACAGAATATCAAAAATGGAAAATTAGTTGTCGAGCTATTTTTGTAAGAATTTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCACTTCCCACAACTC</pcr_primer_p1>
		<pcr_primer_p2>AAATAAGAGGGTCGAAATAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCACTTCCCACAACTCATTCCTCGCTTTCCAGCCCGAAAAAAAAACAACAATTTCGCCGTGCACTTTCTCGTAAAAATTTAATACCAGGCTTCTGCTCAGGCATTTTTTGCGTCTTTTCGGTGAGGCACCTACAATAAATTTGCGGCACACACACACACGAGCCCACCAACCCATTTTCTCGACCGCTCATCTTTTTCTGTTTTTTTTACCTCTCATTTTTTGGTTTTATTTCGACCCTCTTATTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCACTTCCCACAACTCATTCCTCGCTTTCCAGCCCGAAAAAAAAACAACAATTTCGCCGTGCACTTTCTCGTAAAAATTTAATACCAGGCTTCTGCTCAGGCATTTTTTGCGTCTTTTCGGTGAGGCACCTACAATAAATTTGYGGCACACACACACACGAGCCCACCAACCCATTTTCTCGACCGCTCATCTTTTTCTGTTTTTTTTACCTCTCATTTTTTGGTTTTATTTCGACCCTCTTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1715</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>302417</contig_pos>
        <strand>+</strand>
        <context>ACCTGAGTTA[C/T]CATCCGTAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGATCAGTTTTTTCGGGATGATTTTCAAACATCAAAAAATACCTGAGTTA</left_flank>
        <right_flank>CATCCGTAGTAAACAAAACTATTGAGGACGACGGGCTTTGAGACGAATAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACTTCAGCGATCATATGATTTTTGAGCTTGTTTCCATGTCTGATATAAAAACCATAGACATTTTCGAATTGCAACTGATCAAGTTTAGAACACTAGAACGCCGTCTAGACAGTGATATCCAAATTTAGATAGCAGAACTCTCAGACTTATAAAAGCTCAAACATTTTAATACTTCTGAAATTCTCGTCTCCCTTTTCTCACTTCCCACAACTCATTCCTCGCTTTCCAGCCCGAAAAAAAAACAACAATTTCGCCGTGCACTTTCTCGTAAAAATTTAATACCAGGCTTCTGCTCAGGCATTTTTTGCGTCTTTTCGGTGAGGCACCTACAATAAATTTGCGGCACACACACACACGAGCCCACCAACCCATTTTCTCGACCGCTCATCTTTTTCTGTTTTTTTTACCTCTCATTTTTTGGTTTTATTTCGACCCTCTTATTTTTCGGGATCAGTTTTTTCGGGATGATTTTCAAACATCAAAAAATACCTGAGTTATCATCCGTAGTAAACAAAACTATTGAGGACGACGGGCTTTGAGACGAATAACTGATAAGGGCACAAATTTAGAAGCTTTGAAGGATCAAAGTTGAAGGTTCTAGAATAAAAGAGTAGTCGGTGAGGTAGCACTAAATTCAGAATAGTGAGTTTTGGAGAGTTTTCATTAAATCTGGATTTTTCAAGTCATTTTTCGTATGTATATCATAATTTTGGCTATTTTCATTTAGGAAATTTAAAGAAAACAGAATATCAAAAATGGAAAATTAGTTGTCGAGCTATTTTTGTAAGAATTTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTTGAAAATTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTACCAAAATAGGGCAAAAAGAGGTGTCTTCTAGTGATCGGCAAATAGCTG</canonical>
            <polymorphic>GAACTTCAGCGATCATATGATTTTTGAGCTTGTTTCCATGTCTGATATAAAAACCATAGACATTTTCGAATTGCAACTGATCAAGTTTAGAACACTAGAACGCCGTCTAGACAGTGATATCCAAATTTAGATAGCAGAACTCTCAGACTTATAAAAGCTCAAACATTTTAATACTTCTGAAATTCTCGTCTCCCTTTTCTCACTTCCCACAACTCATTCCTCGCTTTCCAGCCCGAAAAAAAAACAACAATTTCGCCGTGCACTTTCTCGTAAAAATTTAATACCAGGCTTCTGCTCAGGCATTTTTTGCGTCTTTTCGGTGAGGCACCTACAATAAATTTGCGGCACACACACACACGAGCCCACCAACCCATTTTCTCGACCGCTCATCTTTTTCTGTTTTTTTTACCTCTCATTTTTTGGTTTTATTTCGACCCTCTTATTTTTCGGGATCAGTTTTTTCGGGATGATTTTCAAACATCAAAAAATACCTGAGTTAYCATCCGTAGTAAACAAAACTATTGAGGACGACGGGCTTTGAGACGAATAACTGATAAGGGCACAAATTTAGAAGCTTTGAAGGATCAAAGTTGAAGGTTCTAGAATAAAAGAGTAGTCGGTGAGGTAGCACTAAATTCAGAATAGTGAGTTTTGGAGAGTTTTCATTAAATCTGGATTTTTCAAGTCATTTTTCGTATGTATATCATAATTTTGGCTATTTTCATTTAGGAAATTTAAAGAAAACAGAATATCAAAAATGGAAAATTAGTTGTCGAGCTATTTTTGTAAGAATTTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTTGAAAATTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTACCAAAATAGGGCAAAAAGAGGTGTCTTCTAGTGATCGGCAAATAGCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTATTTCGACCCTCTTATTT</pcr_primer_p1>
		<pcr_primer_p2>GATTTAATGAAAACTCTCCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTTATTTCGACCCTCTTATTTTTCGGGATCAGTTTTTTCGGGATGATTTTCAAACATCAAAAAATACCTGAGTTATCATCCGTAGTAAACAAAACTATTGAGGACGACGGGCTTTGAGACGAATAACTGATAAGGGCACAAATTTAGAAGCTTTGAAGGATCAAAGTTGAAGGTTCTAGAATAAAAGAGTAGTCGGTGAGGTAGCACTAAATTCAGAATAGTGAGTTTTGGAGAGTTTTCATTAAATC</canonical_amplicon>
		<polymorphic_amplicon>GTTTTATTTCGACCCTCTTATTTTTCGGGATCAGTTTTTTCGGGATGATTTTCAAACATCAAAAAATACCTGAGTTAYCATCCGTAGTAAACAAAACTATTGAGGACGACGGGCTTTGAGACGAATAACTGATAAGGGCACAAATTTAGAAGCTTTGAAGGATCAAAGTTGAAGGTTCTAGAATAAAAGAGTAGTCGGTGAGGTAGCACTAAATTCAGAATAGTGAGTTTTGGAGAGTTTTCATTAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1716</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>302493</contig_pos>
        <strand>+</strand>
        <context>ATTTAGAAGC[G/T]TTGAAGGATC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGACGACGGGCTTTGAGACGAATAACTGATAAGGGCACAAATTTAGAAGC</left_flank>
        <right_flank>TTGAAGGATCAAAGTTGAAGGTTCTAGAATAAAAGAGTAGTCGGTGAGGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGATCAAGTTTAGAACACTAGAACGCCGTCTAGACAGTGATATCCAAATTTAGATAGCAGAACTCTCAGACTTATAAAAGCTCAAACATTTTAATACTTCTGAAATTCTCGTCTCCCTTTTCTCACTTCCCACAACTCATTCCTCGCTTTCCAGCCCGAAAAAAAAACAACAATTTCGCCGTGCACTTTCTCGTAAAAATTTAATACCAGGCTTCTGCTCAGGCATTTTTTGCGTCTTTTCGGTGAGGCACCTACAATAAATTTGCGGCACACACACACACGAGCCCACCAACCCATTTTCTCGACCGCTCATCTTTTTCTGTTTTTTTTACCTCTCATTTTTTGGTTTTATTTCGACCCTCTTATTTTTCGGGATCAGTTTTTTCGGGATGATTTTCAAACATCAAAAAATACCTGAGTTATCATCCGTAGTAAACAAAACTATTGAGGACGACGGGCTTTGAGACGAATAACTGATAAGGGCACAAATTTAGAAGCTTTGAAGGATCAAAGTTGAAGGTTCTAGAATAAAAGAGTAGTCGGTGAGGTAGCACTAAATTCAGAATAGTGAGTTTTGGAGAGTTTTCATTAAATCTGGATTTTTCAAGTCATTTTTCGTATGTATATCATAATTTTGGCTATTTTCATTTAGGAAATTTAAAGAAAACAGAATATCAAAAATGGAAAATTAGTTGTCGAGCTATTTTTGTAAGAATTTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTTGAAAATTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTACCAAAATAGGGCAAAAAGAGGTGTCTTCTAGTGATCGGCAAATAGCTGAAAACTAGGAATTTTTAAAAATTCTGTGTAATCAACGTTTTCAATCTTGGTCTGTTCAACACCCTTCAAAATTTTC</canonical>
            <polymorphic>CTGATCAAGTTTAGAACACTAGAACGCCGTCTAGACAGTGATATCCAAATTTAGATAGCAGAACTCTCAGACTTATAAAAGCTCAAACATTTTAATACTTCTGAAATTCTCGTCTCCCTTTTCTCACTTCCCACAACTCATTCCTCGCTTTCCAGCCCGAAAAAAAAACAACAATTTCGCCGTGCACTTTCTCGTAAAAATTTAATACCAGGCTTCTGCTCAGGCATTTTTTGCGTCTTTTCGGTGAGGCACCTACAATAAATTTGCGGCACACACACACACGAGCCCACCAACCCATTTTCTCGACCGCTCATCTTTTTCTGTTTTTTTTACCTCTCATTTTTTGGTTTTATTTCGACCCTCTTATTTTTCGGGATCAGTTTTTTCGGGATGATTTTCAAACATCAAAAAATACCTGAGTTATCATCCGTAGTAAACAAAACTATTGAGGACGACGGGCTTTGAGACGAATAACTGATAAGGGCACAAATTTAGAAGCKTTGAAGGATCAAAGTTGAAGGTTCTAGAATAAAAGAGTAGTCGGTGAGGTAGCACTAAATTCAGAATAGTGAGTTTTGGAGAGTTTTCATTAAATCTGGATTTTTCAAGTCATTTTTCGTATGTATATCATAATTTTGGCTATTTTCATTTAGGAAATTTAAAGAAAACAGAATATCAAAAATGGAAAATTAGTTGTCGAGCTATTTTTGTAAGAATTTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTTGAAAATTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTACCAAAATAGGGCAAAAAGAGGTGTCTTCTAGTGATCGGCAAATAGCTGAAAACTAGGAATTTTTAAAAATTCTGTGTAATCAACGTTTTCAATCTTGGTCTGTTCAACACCCTTCAAAATTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>417 203 131 89 81 79</canonical_bands>
                <polymorphic_bands>620 131 89 81 79</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>174 141 102 89 81 79 74 73 62 57 39 29</canonical_bands>
                <polymorphic_bands>180 174 102 89 81 79 74 73 62 57 29</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTATTTCGACCCTCTTATTT</pcr_primer_p1>
		<pcr_primer_p2>GATTTAATGAAAACTCTCCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTTATTTCGACCCTCTTATTTTTCGGGATCAGTTTTTTCGGGATGATTTTCAAACATCAAAAAATACCTGAGTTATCATCCGTAGTAAACAAAACTATTGAGGACGACGGGCTTTGAGACGAATAACTGATAAGGGCACAAATTTAGAAGCTTTGAAGGATCAAAGTTGAAGGTTCTAGAATAAAAGAGTAGTCGGTGAGGTAGCACTAAATTCAGAATAGTGAGTTTTGGAGAGTTTTCATTAAATC</canonical_amplicon>
		<polymorphic_amplicon>GTTTTATTTCGACCCTCTTATTTTTCGGGATCAGTTTTTTCGGGATGATTTTCAAACATCAAAAAATACCTGAGTTATCATCCGTAGTAAACAAAACTATTGAGGACGACGGGCTTTGAGACGAATAACTGATAAGGGCACAAATTTAGAAGCKTTGAAGGATCAAAGTTGAAGGTTCTAGAATAAAAGAGTAGTCGGTGAGGTAGCACTAAATTCAGAATAGTGAGTTTTGGAGAGTTTTCATTAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1717</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>303199</contig_pos>
        <strand>+</strand>
        <context>GCATCTCGYA[A/G]GCCGAGAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTAAAAAATGGAGAATGAATTCCCGAGTTTTTATTGTTAGCATCTCGCA</left_flank>
        <right_flank>GCCGAGAACTATTGATATCTTCAACTGAATCATAAGAAAATTTCATAACT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGTAAGAATTTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTTGAAAATTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTACCAAAATAGGGCAAAAAGAGGTGTCTTCTAGTGATCGGCAAATAGCTGAAAACTAGGAATTTTTAAAAATTCTGTGTAATCAACGTTTTCAATCTTGGTCTGTTCAACACCCTTCAAAATTTTCAAAGTGATCGAAAACTTGGCAGTCAAGTTCCAGACGACTGAAAACGGCCATAATGACGGCAAATCAGCTGGAAATTTTTTTTAAATTTTTGATTGCCCGGTATTACGTATCATAGCTTAGATCATATTCATTTGGGAATTACTAAAAAATATATTGTTAAAAAATGGAGAATGAATTCCCGAGTTTTTATTGTTAGCATCTCGCAAGCCGAGAACTATTGATATCTTCAACTGAATCATAAGAAAATTTCATAACTTATGTATTTTGCTGAAAAAAAGCAATTTTCCAATTTTTGATCATTTCCTCTCATAGGAACACGCACGAGAATGATTGGTGGTGTTGCGTATATCATCCTCGCTCCTGAAAAATGAACCCACCAATTTTCGGACACACCCACAACCTCACAACACCTAACGCCACTTTTGATAAATGAGGATTTCAGTGTGTGTTGCGTTTTTTGCTCTTTTTCAGCTTCCCAAATTGTCAGATATTTTGTTTTGTTATAGCCTTCACTGGAAGATTAGATCAAATTAATGCTAATACATACATACTGGATCTTCAGAATACTTATTCATTTTTAAACAAATCAGCTTGTAAAACTGTATTTTATCTCATGAAAAAAAACATCAATTCTAAAAATGATAATATGAGCGATAAGAAATTTAGCACATATTTGGACGATCTCAAAGTTTCATCCCGCATTCCT</canonical>
            <polymorphic>TTTGTAAGAATTTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTTGAAAATTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTACCAAAATAGGGCAAAAAGAGGTGTCTTCTAGTGATCGGCAAATAGCTGAAAACTAGGAATTTTTAAAAATTCTGTGTAATCAACGTTTTCAATCTTGGTCTGTTCAACACCCTTCAAAATTTTCAAAGTGATCGAAAACTTGGCAGTCAAGTTCCAGACGACTGAAAACGGCCATAATGACGGCAAATCAGCTGGAAATTTTTTTTAAATTTTTGATTGCCCGGTATTACGTATCATAGCTTAGATCATATTCATTTGGGAATTACTAAAAAATATATTGTTAAAAAATGGAGAATGAATTCCCGAGTTTTTATTGTTAGCATCTCGCARGCCGAGAACTATTGATATCTTCAACTGAATCATAAGAAAATTTCATAACTTATGTATTTTGCTGAAAAAAAGCAATTTTCCAATTTTTGATCATTTCCTCTCATAGGAACACGCACGAGAATGATTGGTGGTGTTGCGTATATCATCCTCGCTCCTGAAAAATGAACCCACCAATTTTCGGACACACCCACAACCTCACAACACCTAACGCCACTTTTGATAAATGAGGATTTCAGTGTGTGTTGCGTTTTTTGCTCTTTTTCAGCTTCCCAAATTGTCAGATATTTTGTTTTGTTATAGCCTTCACTGGAAGATTAGATCAAATTAATGCTAATACATACATACTGGATCTTCAGAATACTTATTCATTTTTAAACAAATCAGCTTGTAAAACTGTATTTTATCTCATGAAAAAAAACATCAATTCTAAAAATGATAATATGAGCGATAAGAAATTTAGCACATATTTGGACGATCTCAAAGTTTCATCCCGCATTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>264 126 116 102 92 89 84 48 35 24 20</canonical_bands>
                <polymorphic_bands>356 126 116 102 89 84 48 35 24 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATCATATTCATTTGGGAATTA</pcr_primer_p1>
		<pcr_primer_p2>CAGGAGCGAGGATGATATAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGATCATATTCATTTGGGAATTACTAAAAAATATATTGTTAAAAAATGGAGAATGAATTCCCGAGTTTTTATTGTTAGCATCTCGCAAGCCGAGAACTATTGATATCTTCAACTGAATCATAAGAAAATTTCATAACTTATGTATTTTGCTGAAAAAAAGCAATTTTCCAATTTTTGATCATTTCCTCTCATAGGAACACGCACGAGAATGATTGGTGGTGTTGCGTATATCATCCTCGCTCCTG</canonical_amplicon>
		<polymorphic_amplicon>AGATCATATTCATTTGGGAATTACTAAAAAATATATTGTTAAAAAATGGAGAATGAATTCCCGAGTTTTTATTGTTAGCATCTCGCARGCCGAGAACTATTGATATCTTCAACTGAATCATAAGAAAATTTCATAACTTATGTATTTTGCTGAAAAAAAGCAATTTTCCAATTTTTGATCATTTCCTCTCATAGGAACACGCACGAGAATGATTGGTGGTGTTGCGTATATCATCCTCGCTCCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1718</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>303197</contig_pos>
        <strand>+</strand>
        <context>TAGCATCTCG[C/T]ARGCCGAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGTTAAAAAATGGAGAATGAATTCCCGAGTTTTTATTGTTAGCATCTCG</left_flank>
        <right_flank>AAGCCGAGAACTATTGATATCTTCAACTGAATCATAAGAAAATTTCATAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTGTAAGAATTTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTTGAAAATTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTACCAAAATAGGGCAAAAAGAGGTGTCTTCTAGTGATCGGCAAATAGCTGAAAACTAGGAATTTTTAAAAATTCTGTGTAATCAACGTTTTCAATCTTGGTCTGTTCAACACCCTTCAAAATTTTCAAAGTGATCGAAAACTTGGCAGTCAAGTTCCAGACGACTGAAAACGGCCATAATGACGGCAAATCAGCTGGAAATTTTTTTTAAATTTTTGATTGCCCGGTATTACGTATCATAGCTTAGATCATATTCATTTGGGAATTACTAAAAAATATATTGTTAAAAAATGGAGAATGAATTCCCGAGTTTTTATTGTTAGCATCTCGCAAGCCGAGAACTATTGATATCTTCAACTGAATCATAAGAAAATTTCATAACTTATGTATTTTGCTGAAAAAAAGCAATTTTCCAATTTTTGATCATTTCCTCTCATAGGAACACGCACGAGAATGATTGGTGGTGTTGCGTATATCATCCTCGCTCCTGAAAAATGAACCCACCAATTTTCGGACACACCCACAACCTCACAACACCTAACGCCACTTTTGATAAATGAGGATTTCAGTGTGTGTTGCGTTTTTTGCTCTTTTTCAGCTTCCCAAATTGTCAGATATTTTGTTTTGTTATAGCCTTCACTGGAAGATTAGATCAAATTAATGCTAATACATACATACTGGATCTTCAGAATACTTATTCATTTTTAAACAAATCAGCTTGTAAAACTGTATTTTATCTCATGAAAAAAAACATCAATTCTAAAAATGATAATATGAGCGATAAGAAATTTAGCACATATTTGGACGATCTCAAAGTTTCATCCCGCATTC</canonical>
            <polymorphic>TTTTTGTAAGAATTTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTTGAAAATTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTACCAAAATAGGGCAAAAAGAGGTGTCTTCTAGTGATCGGCAAATAGCTGAAAACTAGGAATTTTTAAAAATTCTGTGTAATCAACGTTTTCAATCTTGGTCTGTTCAACACCCTTCAAAATTTTCAAAGTGATCGAAAACTTGGCAGTCAAGTTCCAGACGACTGAAAACGGCCATAATGACGGCAAATCAGCTGGAAATTTTTTTTAAATTTTTGATTGCCCGGTATTACGTATCATAGCTTAGATCATATTCATTTGGGAATTACTAAAAAATATATTGTTAAAAAATGGAGAATGAATTCCCGAGTTTTTATTGTTAGCATCTCGYAAGCCGAGAACTATTGATATCTTCAACTGAATCATAAGAAAATTTCATAACTTATGTATTTTGCTGAAAAAAAGCAATTTTCCAATTTTTGATCATTTCCTCTCATAGGAACACGCACGAGAATGATTGGTGGTGTTGCGTATATCATCCTCGCTCCTGAAAAATGAACCCACCAATTTTCGGACACACCCACAACCTCACAACACCTAACGCCACTTTTGATAAATGAGGATTTCAGTGTGTGTTGCGTTTTTTGCTCTTTTTCAGCTTCCCAAATTGTCAGATATTTTGTTTTGTTATAGCCTTCACTGGAAGATTAGATCAAATTAATGCTAATACATACATACTGGATCTTCAGAATACTTATTCATTTTTAAACAAATCAGCTTGTAAAACTGTATTTTATCTCATGAAAAAAAACATCAATTCTAAAAATGATAATATGAGCGATAAGAAATTTAGCACATATTTGGACGATCTCAAAGTTTCATCCCGCATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATCATATTCATTTGGGAATTA</pcr_primer_p1>
		<pcr_primer_p2>CAGGAGCGAGGATGATATAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGATCATATTCATTTGGGAATTACTAAAAAATATATTGTTAAAAAATGGAGAATGAATTCCCGAGTTTTTATTGTTAGCATCTCGCAAGCCGAGAACTATTGATATCTTCAACTGAATCATAAGAAAATTTCATAACTTATGTATTTTGCTGAAAAAAAGCAATTTTCCAATTTTTGATCATTTCCTCTCATAGGAACACGCACGAGAATGATTGGTGGTGTTGCGTATATCATCCTCGCTCCTG</canonical_amplicon>
		<polymorphic_amplicon>AGATCATATTCATTTGGGAATTACTAAAAAATATATTGTTAAAAAATGGAGAATGAATTCCCGAGTTTTTATTGTTAGCATCTCGYAAGCCGAGAACTATTGATATCTTCAACTGAATCATAAGAAAATTTCATAACTTATGTATTTTGCTGAAAAAAAGCAATTTTCCAATTTTTGATCATTTCCTCTCATAGGAACACGCACGAGAATGATTGGTGGTGTTGCGTATATCATCCTCGCTCCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1719</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>303145</contig_pos>
        <strand>+</strand>
        <context>CTAAAAAATA[G/T]ATTGTTAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTACGTATCATAGCTTAGATCATATTCATTTGGGAATTACTAAAAAATA</left_flank>
        <right_flank>ATTGTTAAAAAATGGAGAATGAATTCCCGAGTTTTTATTGTTAGCATCTC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAATTTAAAGAAAACAGAATATCAAAAATGGAAAATTAGTTGTCGAGCTATTTTTGTAAGAATTTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTTGAAAATTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTACCAAAATAGGGCAAAAAGAGGTGTCTTCTAGTGATCGGCAAATAGCTGAAAACTAGGAATTTTTAAAAATTCTGTGTAATCAACGTTTTCAATCTTGGTCTGTTCAACACCCTTCAAAATTTTCAAAGTGATCGAAAACTTGGCAGTCAAGTTCCAGACGACTGAAAACGGCCATAATGACGGCAAATCAGCTGGAAATTTTTTTTAAATTTTTGATTGCCCGGTATTACGTATCATAGCTTAGATCATATTCATTTGGGAATTACTAAAAAATATATTGTTAAAAAATGGAGAATGAATTCCCGAGTTTTTATTGTTAGCATCTCGCAAGCCGAGAACTATTGATATCTTCAACTGAATCATAAGAAAATTTCATAACTTATGTATTTTGCTGAAAAAAAGCAATTTTCCAATTTTTGATCATTTCCTCTCATAGGAACACGCACGAGAATGATTGGTGGTGTTGCGTATATCATCCTCGCTCCTGAAAAATGAACCCACCAATTTTCGGACACACCCACAACCTCACAACACCTAACGCCACTTTTGATAAATGAGGATTTCAGTGTGTGTTGCGTTTTTTGCTCTTTTTCAGCTTCCCAAATTGTCAGATATTTTGTTTTGTTATAGCCTTCACTGGAAGATTAGATCAAATTAATGCTAATACATACATACTGGATCTTCAGAATACTTATTCATTTTTAAACAAATCAGCTTGTAAAACTGTATTTTATCTCATGAAAAAAAACATCAATTCTAAAAATGATAATATGAGC</canonical>
            <polymorphic>GGAAATTTAAAGAAAACAGAATATCAAAAATGGAAAATTAGTTGTCGAGCTATTTTTGTAAGAATTTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTTGAAAATTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTACCAAAATAGGGCAAAAAGAGGTGTCTTCTAGTGATCGGCAAATAGCTGAAAACTAGGAATTTTTAAAAATTCTGTGTAATCAACGTTTTCAATCTTGGTCTGTTCAACACCCTTCAAAATTTTCAAAGTGATCGAAAACTTGGCAGTCAAGTTCCAGACGACTGAAAACGGCCATAATGACGGCAAATCAGCTGGAAATTTTTTTTAAATTTTTGATTGCCCGGTATTACGTATCATAGCTTAGATCATATTCATTTGGGAATTACTAAAAAATAKATTGTTAAAAAATGGAGAATGAATTCCCGAGTTTTTATTGTTAGCATCTCGCAAGCCGAGAACTATTGATATCTTCAACTGAATCATAAGAAAATTTCATAACTTATGTATTTTGCTGAAAAAAAGCAATTTTCCAATTTTTGATCATTTCCTCTCATAGGAACACGCACGAGAATGATTGGTGGTGTTGCGTATATCATCCTCGCTCCTGAAAAATGAACCCACCAATTTTCGGACACACCCACAACCTCACAACACCTAACGCCACTTTTGATAAATGAGGATTTCAGTGTGTGTTGCGTTTTTTGCTCTTTTTCAGCTTCCCAAATTGTCAGATATTTTGTTTTGTTATAGCCTTCACTGGAAGATTAGATCAAATTAATGCTAATACATACATACTGGATCTTCAGAATACTTATTCATTTTTAAACAAATCAGCTTGTAAAACTGTATTTTATCTCATGAAAAAAAACATCAATTCTAAAAATGATAATATGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTAAGTCAAGCCACCAC</pcr_primer_p1>
		<pcr_primer_p2>TGATTCAGTTGAAGATATCAATAGTT</pcr_primer_p2>
		<pcr_amplicon_size>521</pcr_amplicon_size>
		<canonical_amplicon>TTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTTGAAAATTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTACCAAAATAGGGCAAAAAGAGGTGTCTTCTAGTGATCGGCAAATAGCTGAAAACTAGGAATTTTTAAAAATTCTGTGTAATCAACGTTTTCAATCTTGGTCTGTTCAACACCCTTCAAAATTTTCAAAGTGATCGAAAACTTGGCAGTCAAGTTCCAGACGACTGAAAACGGCCATAATGACGGCAAATCAGCTGGAAATTTTTTTTAAATTTTTGATTGCCCGGTATTACGTATCATAGCTTAGATCATATTCATTTGGGAATTACTAAAAAATATATTGTTAAAAAATGGAGAATGAATTCCCGAGTTTTTATTGTTAGCATCTCGCAAGCCGAGAACTATTGATATCTTCAACTGAATCA</canonical_amplicon>
		<polymorphic_amplicon>TTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTTGAAAATTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTACCAAAATAGGGCAAAAAGAGGTGTCTTCTAGTGATCGGCAAATAGCTGAAAACTAGGAATTTTTAAAAATTCTGTGTAATCAACGTTTTCAATCTTGGTCTGTTCAACACCCTTCAAAATTTTCAAAGTGATCGAAAACTTGGCAGTCAAGTTCCAGACGACTGAAAACGGCCATAATGACGGCAAATCAGCTGGAAATTTTTTTTAAATTTTTGATTGCCCGGTATTACGTATCATAGCTTAGATCATATTCATTTGGGAATTACTAAAAAATAKATTGTTAAAAAATGGAGAATGAATTCCCGAGTTTTTATTGTTAGCATCTCGCAAGCCGAGAACTATTGATATCTTCAACTGAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1720</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>303106</contig_pos>
        <strand>+</strand>
        <context>ttACGTATCA[C/T]AGCTTAGATC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCAGCTGGAAATTTTTTTTAAATTTTTGATTGCCCGGTATTACGTATCA</left_flank>
        <right_flank>AGCTTAGATCATATTCATTTGGGAATTACTAAAAAATATATTGTTAAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCGTATGTATATCATAATTTTGGCTATTTTCATTTAGGAAATTTAAAGAAAACAGAATATCAAAAATGGAAAATTAGTTGTCGAGCTATTTTTGTAAGAATTTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTTGAAAATTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTACCAAAATAGGGCAAAAAGAGGTGTCTTCTAGTGATCGGCAAATAGCTGAAAACTAGGAATTTTTAAAAATTCTGTGTAATCAACGTTTTCAATCTTGGTCTGTTCAACACCCTTCAAAATTTTCAAAGTGATCGAAAACTTGGCAGTCAAGTTCCAGACGACTGAAAACGGCCATAATGACGGCAAATCAGCTGGAAATTTTTTTTAAATTTTTGATTGCCCGGTATTACGTATCATAGCTTAGATCATATTCATTTGGGAATTACTAAAAAATATATTGTTAAAAAATGGAGAATGAATTCCCGAGTTTTTATTGTTAGCATCTCGCAAGCCGAGAACTATTGATATCTTCAACTGAATCATAAGAAAATTTCATAACTTATGTATTTTGCTGAAAAAAAGCAATTTTCCAATTTTTGATCATTTCCTCTCATAGGAACACGCACGAGAATGATTGGTGGTGTTGCGTATATCATCCTCGCTCCTGAAAAATGAACCCACCAATTTTCGGACACACCCACAACCTCACAACACCTAACGCCACTTTTGATAAATGAGGATTTCAGTGTGTGTTGCGTTTTTTGCTCTTTTTCAGCTTCCCAAATTGTCAGATATTTTGTTTTGTTATAGCCTTCACTGGAAGATTAGATCAAATTAATGCTAATACATACATACTGGATCTTCAGAATACTTATTCATTTTTAAACAAATCAGCTTGTAAAACTGTATTTTATCTC</canonical>
            <polymorphic>TTTTCGTATGTATATCATAATTTTGGCTATTTTCATTTAGGAAATTTAAAGAAAACAGAATATCAAAAATGGAAAATTAGTTGTCGAGCTATTTTTGTAAGAATTTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTTGAAAATTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTACCAAAATAGGGCAAAAAGAGGTGTCTTCTAGTGATCGGCAAATAGCTGAAAACTAGGAATTTTTAAAAATTCTGTGTAATCAACGTTTTCAATCTTGGTCTGTTCAACACCCTTCAAAATTTTCAAAGTGATCGAAAACTTGGCAGTCAAGTTCCAGACGACTGAAAACGGCCATAATGACGGCAAATCAGCTGGAAATTTTTTTTAAATTTTTGATTGCCCGGTATTACGTATCAYAGCTTAGATCATATTCATTTGGGAATTACTAAAAAATATATTGTTAAAAAATGGAGAATGAATTCCCGAGTTTTTATTGTTAGCATCTCGCAAGCCGAGAACTATTGATATCTTCAACTGAATCATAAGAAAATTTCATAACTTATGTATTTTGCTGAAAAAAAGCAATTTTCCAATTTTTGATCATTTCCTCTCATAGGAACACGCACGAGAATGATTGGTGGTGTTGCGTATATCATCCTCGCTCCTGAAAAATGAACCCACCAATTTTCGGACACACCCACAACCTCACAACACCTAACGCCACTTTTGATAAATGAGGATTTCAGTGTGTGTTGCGTTTTTTGCTCTTTTTCAGCTTCCCAAATTGTCAGATATTTTGTTTTGTTATAGCCTTCACTGGAAGATTAGATCAAATTAATGCTAATACATACATACTGGATCTTCAGAATACTTATTCATTTTTAAACAAATCAGCTTGTAAAACTGTATTTTATCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTAAGTCAAGCCACCAC</pcr_primer_p1>
		<pcr_primer_p2>GGGAATTCATTCTCCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>463</pcr_amplicon_size>
		<canonical_amplicon>TTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTTGAAAATTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTACCAAAATAGGGCAAAAAGAGGTGTCTTCTAGTGATCGGCAAATAGCTGAAAACTAGGAATTTTTAAAAATTCTGTGTAATCAACGTTTTCAATCTTGGTCTGTTCAACACCCTTCAAAATTTTCAAAGTGATCGAAAACTTGGCAGTCAAGTTCCAGACGACTGAAAACGGCCATAATGACGGCAAATCAGCTGGAAATTTTTTTTAAATTTTTGATTGCCCGGTATTACGTATCATAGCTTAGATCATATTCATTTGGGAATTACTAAAAAATATATTGTTAAAAAATGGAGAATGAATTCCC</canonical_amplicon>
		<polymorphic_amplicon>TTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTTGAAAATTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTACCAAAATAGGGCAAAAAGAGGTGTCTTCTAGTGATCGGCAAATAGCTGAAAACTAGGAATTTTTAAAAATTCTGTGTAATCAACGTTTTCAATCTTGGTCTGTTCAACACCCTTCAAAATTTTCAAAGTGATCGAAAACTTGGCAGTCAAGTTCCAGACGACTGAAAACGGCCATAATGACGGCAAATCAGCTGGAAATTTTTTTTAAATTTTTGATTGCCCGGTATTACGTATCAYAGCTTAGATCATATTCATTTGGGAATTACTAAAAAATATATTGTTAAAAAATGGAGAATGAATTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1724</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>318356</contig_pos>
        <strand>+</strand>
        <context>ATTATTATTC[A/G]TATTGCAGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCTAAAAACAGAAATACTTACATTTTGTCTTTAAGTAAATTATTATTC</left_flank>
        <right_flank>TATTGCAGTAAAATTCCAACTGCAGACAGATTTTTTTTCATTAGAGCTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTAGCGATGATGATACCAAAAGTGAACGCTCTTCTCAAACACGAAGAGGTGGTGGTTGCCATGCAACTGGCGAATTTGGAGGAGTACGAGGAACTGGTTGAAATTGCCGCCAAACATGGAAGTGTCGATCCTCGAAAAAAATAAGTTTCTAGATTTTTTTGTTCTGTTGCTTTGCCTTTTTTTGAATTAGAAGCTTTTTAATTGTAATTTTAAAACTTTTTCAAACTAATGTAAACAAGTTTGTAGACTTTTCTTTTTTCATGAGATTGTTTGGAGCTTTCTCTTGAACTTGAATAAAAAAACTTCCGCCGCACTGTCAGGTTCATCTGATTGTTTTGAAATAGGTTATTTCAATCCAGTGAAGTTCAGTTTGTTTTCTATTTTTTGTGTACACTATCTTTTATGGCGGTTCGAAGTAGTCTACCAGAATGTTGCTGCTCAAATTCGCTTCCTAAAAACAGAAATACTTACATTTTGTCTTTAAGTAAATTATTATTCATATTGCAGTAAAATTCCAACTGCAGACAGATTTTTTTTCATTAGAGCTTTCTTTTCTTGTGCCCCTCCCGATTTTCAAATAGTGCGAATTGGTGTGACGGTGTTTGCAGATTTTGCATACCGTATACCAGAACTAAAATAAGTTTTGCGTTATTGTATTAGGTTGGCGGGAAAGTCTTTGTCACTCTGTTTGTTTAATCACTGTTCTCGTATATGGAGGCTGTGTATGATATCGACTCTAGTGAATAACAAGGTGATAAGAACCTTCCATATAAACAAGTCCCCATTTCCTTCCCTGCTCCTCATCTGTAATTGAAACGATATGTTTGTTCCCACTGCTATTCACATCAGACATGTTTTGATTTACCTCTTCCTATCTCACACCACGATGAAGGATTCTCACACCACGATGAAGGATTCTTTCTTGAAGAATGTGTACAACACACATGCCCCTCACTACAATACTATTCGCAATTGGTTCCATCGTTTCGAAAAAGATGA</canonical>
            <polymorphic>ACTAGCGATGATGATACCAAAAGTGAACGCTCTTCTCAAACACGAAGAGGTGGTGGTTGCCATGCAACTGGCGAATTTGGAGGAGTACGAGGAACTGGTTGAAATTGCCGCCAAACATGGAAGTGTCGATCCTCGAAAAAAATAAGTTTCTAGATTTTTTTGTTCTGTTGCTTTGCCTTTTTTTGAATTAGAAGCTTTTTAATTGTAATTTTAAAACTTTTTCAAACTAATGTAAACAAGTTTGTAGACTTTTCTTTTTTCATGAGATTGTTTGGAGCTTTCTCTTGAACTTGAATAAAAAAACTTCCGCCGCACTGTCAGGTTCATCTGATTGTTTTGAAATAGGTTATTTCAATCCAGTGAAGTTCAGTTTGTTTTCTATTTTTTGTGTACACTATCTTTTATGGCGGTTCGAAGTAGTCTACCAGAATGTTGCTGCTCAAATTCGCTTCCTAAAAACAGAAATACTTACATTTTGTCTTTAAGTAAATTATTATTCRTATTGCAGTAAAATTCCAACTGCAGACAGATTTTTTTTCATTAGAGCTTTCTTTTCTTGTGCCCCTCCCGATTTTCAAATAGTGCGAATTGGTGTGACGGTGTTTGCAGATTTTGCATACCGTATACCAGAACTAAAATAAGTTTTGCGTTATTGTATTAGGTTGGCGGGAAAGTCTTTGTCACTCTGTTTGTTTAATCACTGTTCTCGTATATGGAGGCTGTGTATGATATCGACTCTAGTGAATAACAAGGTGATAAGAACCTTCCATATAAACAAGTCCCCATTTCCTTCCCTGCTCCTCATCTGTAATTGAAACGATATGTTTGTTCCCACTGCTATTCACATCAGACATGTTTTGATTTACCTCTTCCTATCTCACACCACGATGAAGGATTCTCACACCACGATGAAGGATTCTTTCTTGAAGAATGTGTACAACACACATGCCCCTCACTACAATACTATTCGCAATTGGTTCCATCGTTTCGAAAAAGATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAGGTTCATCTGATTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>CACAAGAAAAGAAAGCTCTAATG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GTCAGGTTCATCTGATTGTTTTGAAATAGGTTATTTCAATCCAGTGAAGTTCAGTTTGTTTTCTATTTTTTGTGTACACTATCTTTTATGGCGGTTCGAAGTAGTCTACCAGAATGTTGCTGCTCAAATTCGCTTCCTAAAAACAGAAATACTTACATTTTGTCTTTAAGTAAATTATTATTCATATTGCAGTAAAATTCCAACTGCAGACAGATTTTTTTTCATTAGAGCTTTCTTTTCTTGTG</canonical_amplicon>
		<polymorphic_amplicon>GTCAGGTTCATCTGATTGTTTTGAAATAGGTTATTTCAATCCAGTGAAGTTCAGTTTGTTTTCTATTTTTTGTGTACACTATCTTTTATGGCGGTTCGAAGTAGTCTACCAGAATGTTGCTGCTCAAATTCGCTTCCTAAAAACAGAAATACTTACATTTTGTCTTTAAGTAAATTATTATTCRTATTGCAGTAAAATTCCAACTGCAGACAGATTTTTTTTCATTAGAGCTTTCTTTTCTTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1733</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>357367</contig_pos>
        <strand></strand>
        <context>CAGATAATCA[A/G]CTAAACATGt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTGTTATTGATAAAATTCATATTTCAAGTTTTTCATTTTCAGATAATCA</left_flank>
        <right_flank>CTAAACATGTTCTTCTCTTCTTCCTCATCCTCTGCTTCGTCCTCTATCTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTTTCTCATTTCACAGATACAGTGCGGTCAACATCTTTAGGGTCGCCCTCGTTTTTTGGGTTCCAGACGAACGGGAATAGATTTCAAAATTTTGTTAACGTGTGTCGCTCATTTTTTCTTACTTTATTCGAATTTTTTCTTTTTATTCTATGAACGAATTACAAAAAATTCGACCTTCAAGACTAACCCCTCCCGTTTTTTTCCCAACAACATTCCCACAAAAAAAAAATTTGGTCCCTGGGAAAGTTTTTTTAGGGGTAGACCCTATACAGCCAGGTGGTGGTGTCACTCACACTTTGTATACACTTCACCCCATCACTCCACCCACAGTGCACCTGCTCGCTCCGCCCACTTTTGGTGGACTTCACTAGACCCAACTTAGTCATTCATTCATTCATTTTTTCGGTTCGCTCAGTGGCTGGTTCTTCACTTTTCTCCGGTCCATACTTGTTATTGATAAAATTCATATTTCAAGTTTTTCATTTTCAGATAATCAACTAAACATGTTCTTCTCTTCTTCCTCATCCTCTGCTTCGTCCTCTATCTCCTCGTCCTCCTCTGGTTCTTCCACTAGTGCTGCCCCGATCGTTACCAAGATGGAGATCACCAAGGAAGACGTCCGCAACTACAAAGAGACTCTCCGCGGAATGAAAGGAAGAAAGTACAGCGCTGCAAGTTTAAAAACACCTAGAAGATTTTTATAAAGAACACATTTTTAGCTTGCCATGCATTTGATCACCAACGAGACCATCTACCGTGTCACCATGGAGTGTGCTGTCAAAGCGATCAAGATTCTGAAGAAAGTCATCAGCAGAGGACCATGCCGTTATAAGTTGGTAAGTGAATTTATAACTTTTTTGAATTGATTGAGAATCGATGTGTTAATTTACTCTGCAAAACAAGTCTCGACTGCAAAATAAATCGTTATTCCAGGGAAGCAAGACCGACAATCTTGTCCAACTCTACAAGAAGATCCACGACGAATATAAAGACATGA</canonical>
            <polymorphic>CTTTTTTCTCATTTCACAGATACAGTGCGGTCAACATCTTTAGGGTCGCCCTCGTTTTTTGGGTTCCAGACGAACGGGAATAGATTTCAAAATTTTGTTAACGTGTGTCGCTCATTTTTTCTTACTTTATTCGAATTTTTTCTTTTTATTCTATGAACGAATTACAAAAAATTCGACCTTCAAGACTAACCCCTCCCGTTTTTTTCCCAACAACATTCCCACAAAAAAAAAATTTGGTCCCTGGGAAAGTTTTTTTAGGGGTAGACCCTATACAGCCAGGTGGTGGTGTCACTCACACTTTGTATACACTTCACCCCATCACTCCACCCACAGTGCACCTGCTCGCTCCGCCCACTTTTGGTGGACTTCACTAGACCCAACTTAGTCATTCATTCATTCATTTTTTCGGTTCGCTCAGTGGCTGGTTCTTCACTTTTCTCCGGTCCATACTTGTTATTGATAAAATTCATATTTCAAGTTTTTCATTTTCAGATAATCARCTAAACATGTTCTTCTCTTCTTCCTCATCCTCTGCTTCGTCCTCTATCTCCTCGTCCTCCTCTGGTTCTTCCACTAGTGCTGCCCCGATCGTTACCAAGATGGAGATCACCAAGGAAGACGTCCGCAACTACAAAGAGACTCTCCGCGGAATGAAAGGAAGAAAGTACAGCGCTGCAAGTTTAAAAACACCTAGAAGATTTTTATAAAGAACACATTTTTAGCTTGCCATGCATTTGATCACCAACGAGACCATCTACCGTGTCACCATGGAGTGTGCTGTCAAAGCGATCAAGATTCTGAAGAAAGTCATCAGCAGAGGACCATGCCGTTATAAGTTGGTAAGTGAATTTATAACTTTTTTGAATTGATTGAGAATCGATGTGTTAATTTACTCTGCAAAACAAGTCTCGACTGCAAAATAAATCGTTATTCCAGGGAAGCAAGACCGACAATCTTGTCCAACTCTACAAGAAGATCCACGACGAATATAAAGACATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAACTTAGTCATTCATTCATTC</pcr_primer_p1>
		<pcr_primer_p2>GGTGATCTCCATCTTGGTAAC</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>CCAACTTAGTCATTCATTCATTCATTTTTTCGGTTCGCTCAGTGGCTGGTTCTTCACTTTTCTCCGGTCCATACTTGTTATTGATAAAATTCATATTTCAAGTTTTTCATTTTCAGATAATCAACTAAACATGTTCTTCTCTTCTTCCTCATCCTCTGCTTCGTCCTCTATCTCCTCGTCCTCCTCTGGTTCTTCCACTAGTGCTGCCCCGATCGTTACCAAGATGGAGATCACC</canonical_amplicon>
		<polymorphic_amplicon>CCAACTTAGTCATTCATTCATTCATTTTTTCGGTTCGCTCAGTGGCTGGTTCTTCACTTTTCTCCGGTCCATACTTGTTATTGATAAAATTCATATTTCAAGTTTTTCATTTTCAGATAATCARCTAAACATGTTCTTCTCTTCTTCCTCATCCTCTGCTTCGTCCTCTATCTCCTCGTCCTCCTCTGGTTCTTCCACTAGTGCTGCCCCGATCGTTACCAAGATGGAGATCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1734</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>357334</contig_pos>
        <strand></strand>
        <context>TTGATAWWAT[T/C]CATATTTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGTGGCTGGTTCTTCACTTTTCTCCGGTCCATACTTGTTATTGATAAAAT</left_flank>
        <right_flank>CATATTTCAAGTTTTTCATTTTCAGATAATCAACTAAACATGTTCTTCTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCTTTTCACTTGATGTATTCAATTAGAAGCTCTTTTTTCTCATTTCACAGATACAGTGCGGTCAACATCTTTAGGGTCGCCCTCGTTTTTTGGGTTCCAGACGAACGGGAATAGATTTCAAAATTTTGTTAACGTGTGTCGCTCATTTTTTCTTACTTTATTCGAATTTTTTCTTTTTATTCTATGAACGAATTACAAAAAATTCGACCTTCAAGACTAACCCCTCCCGTTTTTTTCCCAACAACATTCCCACAAAAAAAAAATTTGGTCCCTGGGAAAGTTTTTTTAGGGGTAGACCCTATACAGCCAGGTGGTGGTGTCACTCACACTTTGTATACACTTCACCCCATCACTCCACCCACAGTGCACCTGCTCGCTCCGCCCACTTTTGGTGGACTTCACTAGACCCAACTTAGTCATTCATTCATTCATTTTTTCGGTTCGCTCAGTGGCTGGTTCTTCACTTTTCTCCGGTCCATACTTGTTATTGATAAAATTCATATTTCAAGTTTTTCATTTTCAGATAATCAACTAAACATGTTCTTCTCTTCTTCCTCATCCTCTGCTTCGTCCTCTATCTCCTCGTCCTCCTCTGGTTCTTCCACTAGTGCTGCCCCGATCGTTACCAAGATGGAGATCACCAAGGAAGACGTCCGCAACTACAAAGAGACTCTCCGCGGAATGAAAGGAAGAAAGTACAGCGCTGCAAGTTTAAAAACACCTAGAAGATTTTTATAAAGAACACATTTTTAGCTTGCCATGCATTTGATCACCAACGAGACCATCTACCGTGTCACCATGGAGTGTGCTGTCAAAGCGATCAAGATTCTGAAGAAAGTCATCAGCAGAGGACCATGCCGTTATAAGTTGGTAAGTGAATTTATAACTTTTTTGAATTGATTGAGAATCGATGTGTTAATTTACTCTGCAAAACAAGTCTCGACTGCAAAATAAATCGTTATTCCAGGGAAGCAAGACCGACAATCTTGTCCAACTCT</canonical>
            <polymorphic>TTGCTTTTCACTTGATGTATTCAATTAGAAGCTCTTTTTTCTCATTTCACAGATACAGTGCGGTCAACATCTTTAGGGTCGCCCTCGTTTTTTGGGTTCCAGACGAACGGGAATAGATTTCAAAATTTTGTTAACGTGTGTCGCTCATTTTTTCTTACTTTATTCGAATTTTTTCTTTTTATTCTATGAACGAATTACAAAAAATTCGACCTTCAAGACTAACCCCTCCCGTTTTTTTCCCAACAACATTCCCACAAAAAAAAAATTTGGTCCCTGGGAAAGTTTTTTTAGGGGTAGACCCTATACAGCCAGGTGGTGGTGTCACTCACACTTTGTATACACTTCACCCCATCACTCCACCCACAGTGCACCTGCTCGCTCCGCCCACTTTTGGTGGACTTCACTAGACCCAACTTAGTCATTCATTCATTCATTTTTTCGGTTCGCTCAGTGGCTGGTTCTTCACTTTTCTCCGGTCCATACTTGTTATTGATAAAATYCATATTTCAAGTTTTTCATTTTCAGATAATCAACTAAACATGTTCTTCTCTTCTTCCTCATCCTCTGCTTCGTCCTCTATCTCCTCGTCCTCCTCTGGTTCTTCCACTAGTGCTGCCCCGATCGTTACCAAGATGGAGATCACCAAGGAAGACGTCCGCAACTACAAAGAGACTCTCCGCGGAATGAAAGGAAGAAAGTACAGCGCTGCAAGTTTAAAAACACCTAGAAGATTTTTATAAAGAACACATTTTTAGCTTGCCATGCATTTGATCACCAACGAGACCATCTACCGTGTCACCATGGAGTGTGCTGTCAAAGCGATCAAGATTCTGAAGAAAGTCATCAGCAGAGGACCATGCCGTTATAAGTTGGTAAGTGAATTTATAACTTTTTTGAATTGATTGAGAATCGATGTGTTAATTTACTCTGCAAAACAAGTCTCGACTGCAAAATAAATCGTTATTCCAGGGAAGCAAGACCGACAATCTTGTCCAACTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>383 233 123 121 61 43 36</canonical_bands>
                <polymorphic_bands>616 123 121 61 43 36</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>383 233 101 81 61 43 26 23 22 17 10</canonical_bands>
                <polymorphic_bands>616 101 81 61 43 26 23 22 17 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAACTTAGTCATTCATTCATTC</pcr_primer_p1>
		<pcr_primer_p2>GGTGATCTCCATCTTGGTAAC</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>CCAACTTAGTCATTCATTCATTCATTTTTTCGGTTCGCTCAGTGGCTGGTTCTTCACTTTTCTCCGGTCCATACTTGTTATTGATAAAATTCATATTTCAAGTTTTTCATTTTCAGATAATCAACTAAACATGTTCTTCTCTTCTTCCTCATCCTCTGCTTCGTCCTCTATCTCCTCGTCCTCCTCTGGTTCTTCCACTAGTGCTGCCCCGATCGTTACCAAGATGGAGATCACC</canonical_amplicon>
		<polymorphic_amplicon>CCAACTTAGTCATTCATTCATTCATTTTTTCGGTTCGCTCAGTGGCTGGTTCTTCACTTTTCTCCGGTCCATACTTGTTATTGATAAAATYCATATTTCAAGTTTTTCATTTTCAGATAATCAACTAAACATGTTCTTCTCTTCTTCCTCATCCTCTGCTTCGTCCTCTATCTCCTCGTCCTCCTCTGGTTCTTCCACTAGTGCTGCCCCGATCGTTACCAAGATGGAGATCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1735</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>357331</contig_pos>
        <strand></strand>
        <context>TTATTGATAW[A/T]ATYCATATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCAGTGGCTGGTTCTTCACTTTTCTCCGGTCCATACTTGTTATTGATAA</left_flank>
        <right_flank>ATTCATATTTCAAGTTTTTCATTTTCAGATAATCAACTAAACATGTTCTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGTTGCTTTTCACTTGATGTATTCAATTAGAAGCTCTTTTTTCTCATTTCACAGATACAGTGCGGTCAACATCTTTAGGGTCGCCCTCGTTTTTTGGGTTCCAGACGAACGGGAATAGATTTCAAAATTTTGTTAACGTGTGTCGCTCATTTTTTCTTACTTTATTCGAATTTTTTCTTTTTATTCTATGAACGAATTACAAAAAATTCGACCTTCAAGACTAACCCCTCCCGTTTTTTTCCCAACAACATTCCCACAAAAAAAAAATTTGGTCCCTGGGAAAGTTTTTTTAGGGGTAGACCCTATACAGCCAGGTGGTGGTGTCACTCACACTTTGTATACACTTCACCCCATCACTCCACCCACAGTGCACCTGCTCGCTCCGCCCACTTTTGGTGGACTTCACTAGACCCAACTTAGTCATTCATTCATTCATTTTTTCGGTTCGCTCAGTGGCTGGTTCTTCACTTTTCTCCGGTCCATACTTGTTATTGATAAAATTCATATTTCAAGTTTTTCATTTTCAGATAATCAACTAAACATGTTCTTCTCTTCTTCCTCATCCTCTGCTTCGTCCTCTATCTCCTCGTCCTCCTCTGGTTCTTCCACTAGTGCTGCCCCGATCGTTACCAAGATGGAGATCACCAAGGAAGACGTCCGCAACTACAAAGAGACTCTCCGCGGAATGAAAGGAAGAAAGTACAGCGCTGCAAGTTTAAAAACACCTAGAAGATTTTTATAAAGAACACATTTTTAGCTTGCCATGCATTTGATCACCAACGAGACCATCTACCGTGTCACCATGGAGTGTGCTGTCAAAGCGATCAAGATTCTGAAGAAAGTCATCAGCAGAGGACCATGCCGTTATAAGTTGGTAAGTGAATTTATAACTTTTTTGAATTGATTGAGAATCGATGTGTTAATTTACTCTGCAAAACAAGTCTCGACTGCAAAATAAATCGTTATTCCAGGGAAGCAAGACCGACAATCTTGTCCAAC</canonical>
            <polymorphic>CCGTTGCTTTTCACTTGATGTATTCAATTAGAAGCTCTTTTTTCTCATTTCACAGATACAGTGCGGTCAACATCTTTAGGGTCGCCCTCGTTTTTTGGGTTCCAGACGAACGGGAATAGATTTCAAAATTTTGTTAACGTGTGTCGCTCATTTTTTCTTACTTTATTCGAATTTTTTCTTTTTATTCTATGAACGAATTACAAAAAATTCGACCTTCAAGACTAACCCCTCCCGTTTTTTTCCCAACAACATTCCCACAAAAAAAAAATTTGGTCCCTGGGAAAGTTTTTTTAGGGGTAGACCCTATACAGCCAGGTGGTGGTGTCACTCACACTTTGTATACACTTCACCCCATCACTCCACCCACAGTGCACCTGCTCGCTCCGCCCACTTTTGGTGGACTTCACTAGACCCAACTTAGTCATTCATTCATTCATTTTTTCGGTTCGCTCAGTGGCTGGTTCTTCACTTTTCTCCGGTCCATACTTGTTATTGATAAWATTCATATTTCAAGTTTTTCATTTTCAGATAATCAACTAAACATGTTCTTCTCTTCTTCCTCATCCTCTGCTTCGTCCTCTATCTCCTCGTCCTCCTCTGGTTCTTCCACTAGTGCTGCCCCGATCGTTACCAAGATGGAGATCACCAAGGAAGACGTCCGCAACTACAAAGAGACTCTCCGCGGAATGAAAGGAAGAAAGTACAGCGCTGCAAGTTTAAAAACACCTAGAAGATTTTTATAAAGAACACATTTTTAGCTTGCCATGCATTTGATCACCAACGAGACCATCTACCGTGTCACCATGGAGTGTGCTGTCAAAGCGATCAAGATTCTGAAGAAAGTCATCAGCAGAGGACCATGCCGTTATAAGTTGGTAAGTGAATTTATAACTTTTTTGAATTGATTGAGAATCGATGTGTTAATTTACTCTGCAAAACAAGTCTCGACTGCAAAATAAATCGTTATTCCAGGGAAGCAAGACCGACAATCTTGTCCAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>383 233 126 118 61 43 36</canonical_bands>
                <polymorphic_bands>616 126 118 61 43 36</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>383 233 101 78 61 43 26 25 23 17 10</canonical_bands>
                <polymorphic_bands>616 101 78 61 43 26 25 23 17 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAACTTAGTCATTCATTCATTC</pcr_primer_p1>
		<pcr_primer_p2>GGTGATCTCCATCTTGGTAAC</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>CCAACTTAGTCATTCATTCATTCATTTTTTCGGTTCGCTCAGTGGCTGGTTCTTCACTTTTCTCCGGTCCATACTTGTTATTGATAAAATTCATATTTCAAGTTTTTCATTTTCAGATAATCAACTAAACATGTTCTTCTCTTCTTCCTCATCCTCTGCTTCGTCCTCTATCTCCTCGTCCTCCTCTGGTTCTTCCACTAGTGCTGCCCCGATCGTTACCAAGATGGAGATCACC</canonical_amplicon>
		<polymorphic_amplicon>CCAACTTAGTCATTCATTCATTCATTTTTTCGGTTCGCTCAGTGGCTGGTTCTTCACTTTTCTCCGGTCCATACTTGTTATTGATAAWATTCATATTTCAAGTTTTTCATTTTCAGATAATCAACTAAACATGTTCTTCTCTTCTTCCTCATCCTCTGCTTCGTCCTCTATCTCCTCGTCCTCCTCTGGTTCTTCCACTAGTGCTGCCCCGATCGTTACCAAGATGGAGATCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1736</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>357330</contig_pos>
        <strand></strand>
        <context>GTTATTGATA[A/T]WATYCATATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTCAGTGGCTGGTTCTTCACTTTTCTCCGGTCCATACTTGTTATTGATA</left_flank>
        <right_flank>AATTCATATTTCAAGTTTTTCATTTTCAGATAATCAACTAAACATGTTCT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCGTTGCTTTTCACTTGATGTATTCAATTAGAAGCTCTTTTTTCTCATTTCACAGATACAGTGCGGTCAACATCTTTAGGGTCGCCCTCGTTTTTTGGGTTCCAGACGAACGGGAATAGATTTCAAAATTTTGTTAACGTGTGTCGCTCATTTTTTCTTACTTTATTCGAATTTTTTCTTTTTATTCTATGAACGAATTACAAAAAATTCGACCTTCAAGACTAACCCCTCCCGTTTTTTTCCCAACAACATTCCCACAAAAAAAAAATTTGGTCCCTGGGAAAGTTTTTTTAGGGGTAGACCCTATACAGCCAGGTGGTGGTGTCACTCACACTTTGTATACACTTCACCCCATCACTCCACCCACAGTGCACCTGCTCGCTCCGCCCACTTTTGGTGGACTTCACTAGACCCAACTTAGTCATTCATTCATTCATTTTTTCGGTTCGCTCAGTGGCTGGTTCTTCACTTTTCTCCGGTCCATACTTGTTATTGATAAAATTCATATTTCAAGTTTTTCATTTTCAGATAATCAACTAAACATGTTCTTCTCTTCTTCCTCATCCTCTGCTTCGTCCTCTATCTCCTCGTCCTCCTCTGGTTCTTCCACTAGTGCTGCCCCGATCGTTACCAAGATGGAGATCACCAAGGAAGACGTCCGCAACTACAAAGAGACTCTCCGCGGAATGAAAGGAAGAAAGTACAGCGCTGCAAGTTTAAAAACACCTAGAAGATTTTTATAAAGAACACATTTTTAGCTTGCCATGCATTTGATCACCAACGAGACCATCTACCGTGTCACCATGGAGTGTGCTGTCAAAGCGATCAAGATTCTGAAGAAAGTCATCAGCAGAGGACCATGCCGTTATAAGTTGGTAAGTGAATTTATAACTTTTTTGAATTGATTGAGAATCGATGTGTTAATTTACTCTGCAAAACAAGTCTCGACTGCAAAATAAATCGTTATTCCAGGGAAGCAAGACCGACAATCTTGTCCAA</canonical>
            <polymorphic>CCCGTTGCTTTTCACTTGATGTATTCAATTAGAAGCTCTTTTTTCTCATTTCACAGATACAGTGCGGTCAACATCTTTAGGGTCGCCCTCGTTTTTTGGGTTCCAGACGAACGGGAATAGATTTCAAAATTTTGTTAACGTGTGTCGCTCATTTTTTCTTACTTTATTCGAATTTTTTCTTTTTATTCTATGAACGAATTACAAAAAATTCGACCTTCAAGACTAACCCCTCCCGTTTTTTTCCCAACAACATTCCCACAAAAAAAAAATTTGGTCCCTGGGAAAGTTTTTTTAGGGGTAGACCCTATACAGCCAGGTGGTGGTGTCACTCACACTTTGTATACACTTCACCCCATCACTCCACCCACAGTGCACCTGCTCGCTCCGCCCACTTTTGGTGGACTTCACTAGACCCAACTTAGTCATTCATTCATTCATTTTTTCGGTTCGCTCAGTGGCTGGTTCTTCACTTTTCTCCGGTCCATACTTGTTATTGATAWAATTCATATTTCAAGTTTTTCATTTTCAGATAATCAACTAAACATGTTCTTCTCTTCTTCCTCATCCTCTGCTTCGTCCTCTATCTCCTCGTCCTCCTCTGGTTCTTCCACTAGTGCTGCCCCGATCGTTACCAAGATGGAGATCACCAAGGAAGACGTCCGCAACTACAAAGAGACTCTCCGCGGAATGAAAGGAAGAAAGTACAGCGCTGCAAGTTTAAAAACACCTAGAAGATTTTTATAAAGAACACATTTTTAGCTTGCCATGCATTTGATCACCAACGAGACCATCTACCGTGTCACCATGGAGTGTGCTGTCAAAGCGATCAAGATTCTGAAGAAAGTCATCAGCAGAGGACCATGCCGTTATAAGTTGGTAAGTGAATTTATAACTTTTTTGAATTGATTGAGAATCGATGTGTTAATTTACTCTGCAAAACAAGTCTCGACTGCAAAATAAATCGTTATTCCAGGGAAGCAAGACCGACAATCTTGTCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>383 233 127 117 61 43 36</canonical_bands>
                <polymorphic_bands>616 127 117 61 43 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAACTTAGTCATTCATTCATTC</pcr_primer_p1>
		<pcr_primer_p2>GGTGATCTCCATCTTGGTAAC</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>CCAACTTAGTCATTCATTCATTCATTTTTTCGGTTCGCTCAGTGGCTGGTTCTTCACTTTTCTCCGGTCCATACTTGTTATTGATAAAATTCATATTTCAAGTTTTTCATTTTCAGATAATCAACTAAACATGTTCTTCTCTTCTTCCTCATCCTCTGCTTCGTCCTCTATCTCCTCGTCCTCCTCTGGTTCTTCCACTAGTGCTGCCCCGATCGTTACCAAGATGGAGATCACC</canonical_amplicon>
		<polymorphic_amplicon>CCAACTTAGTCATTCATTCATTCATTTTTTCGGTTCGCTCAGTGGCTGGTTCTTCACTTTTCTCCGGTCCATACTTGTTATTGATAWAATTCATATTTCAAGTTTTTCATTTTCAGATAATCAACTAAACATGTTCTTCTCTTCTTCCTCATCCTCTGCTTCGTCCTCTATCTCCTCGTCCTCCTCTGGTTCTTCCACTAGTGCTGCCCCGATCGTTACCAAGATGGAGATCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1737</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>357239</contig_pos>
        <strand></strand>
        <context>TGGACTTCAC[T/C]AGACCCAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTCCACCCACAGTGCACCTGCTCGCTCCGCCCACTTTTGGTGGACTTCAC</left_flank>
        <right_flank>AGACCCAACTTAGTCATTCATTCATTCATTTTTTCGGTTCGCTCAGTGGC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACTGTATGTCAGTTCCATCGCCAATTTCGAAGTTTGACACCCACAAAACTATCTCATTAGACAATGTATGCTCTCCTTTTGGAACAAAACCCGTTGCTTTTCACTTGATGTATTCAATTAGAAGCTCTTTTTTCTCATTTCACAGATACAGTGCGGTCAACATCTTTAGGGTCGCCCTCGTTTTTTGGGTTCCAGACGAACGGGAATAGATTTCAAAATTTTGTTAACGTGTGTCGCTCATTTTTTCTTACTTTATTCGAATTTTTTCTTTTTATTCTATGAACGAATTACAAAAAATTCGACCTTCAAGACTAACCCCTCCCGTTTTTTTCCCAACAACATTCCCACAAAAAAAAAATTTGGTCCCTGGGAAAGTTTTTTTAGGGGTAGACCCTATACAGCCAGGTGGTGGTGTCACTCACACTTTGTATACACTTCACCCCATCACTCCACCCACAGTGCACCTGCTCGCTCCGCCCACTTTTGGTGGACTTCACTAGACCCAACTTAGTCATTCATTCATTCATTTTTTCGGTTCGCTCAGTGGCTGGTTCTTCACTTTTCTCCGGTCCATACTTGTTATTGATAAAATTCATATTTCAAGTTTTTCATTTTCAGATAATCAACTAAACATGTTCTTCTCTTCTTCCTCATCCTCTGCTTCGTCCTCTATCTCCTCGTCCTCCTCTGGTTCTTCCACTAGTGCTGCCCCGATCGTTACCAAGATGGAGATCACCAAGGAAGACGTCCGCAACTACAAAGAGACTCTCCGCGGAATGAAAGGAAGAAAGTACAGCGCTGCAAGTTTAAAAACACCTAGAAGATTTTTATAAAGAACACATTTTTAGCTTGCCATGCATTTGATCACCAACGAGACCATCTACCGTGTCACCATGGAGTGTGCTGTCAAAGCGATCAAGATTCTGAAGAAAGTCATCAGCAGAGGACCATGCCGTTATAAGTTGGTAAGTGAATTTATAACTTTTTTGAATTGATTG</canonical>
            <polymorphic>TTACTGTATGTCAGTTCCATCGCCAATTTCGAAGTTTGACACCCACAAAACTATCTCATTAGACAATGTATGCTCTCCTTTTGGAACAAAACCCGTTGCTTTTCACTTGATGTATTCAATTAGAAGCTCTTTTTTCTCATTTCACAGATACAGTGCGGTCAACATCTTTAGGGTCGCCCTCGTTTTTTGGGTTCCAGACGAACGGGAATAGATTTCAAAATTTTGTTAACGTGTGTCGCTCATTTTTTCTTACTTTATTCGAATTTTTTCTTTTTATTCTATGAACGAATTACAAAAAATTCGACCTTCAAGACTAACCCCTCCCGTTTTTTTCCCAACAACATTCCCACAAAAAAAAAATTTGGTCCCTGGGAAAGTTTTTTTAGGGGTAGACCCTATACAGCCAGGTGGTGGTGTCACTCACACTTTGTATACACTTCACCCCATCACTCCACCCACAGTGCACCTGCTCGCTCCGCCCACTTTTGGTGGACTTCACYAGACCCAACTTAGTCATTCATTCATTCATTTTTTCGGTTCGCTCAGTGGCTGGTTCTTCACTTTTCTCCGGTCCATACTTGTTATTGATAAAATTCATATTTCAAGTTTTTCATTTTCAGATAATCAACTAAACATGTTCTTCTCTTCTTCCTCATCCTCTGCTTCGTCCTCTATCTCCTCGTCCTCCTCTGGTTCTTCCACTAGTGCTGCCCCGATCGTTACCAAGATGGAGATCACCAAGGAAGACGTCCGCAACTACAAAGAGACTCTCCGCGGAATGAAAGGAAGAAAGTACAGCGCTGCAAGTTTAAAAACACCTAGAAGATTTTTATAAAGAACACATTTTTAGCTTGCCATGCATTTGATCACCAACGAGACCATCTACCGTGTCACCATGGAGTGTGCTGTCAAAGCGATCAAGATTCTGAAGAAAGTCATCAGCAGAGGACCATGCCGTTATAAGTTGGTAAGTGAATTTATAACTTTTTTGAATTGATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 203 181 117</canonical_bands>
                <polymorphic_bands>702 181 117</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGTGTCACTCACACTTTGTAT</pcr_primer_p1>
		<pcr_primer_p2>ATCTGAAAATGAAAAACTTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>211</pcr_amplicon_size>
		<canonical_amplicon>TGGTGTCACTCACACTTTGTATACACTTCACCCCATCACTCCACCCACAGTGCACCTGCTCGCTCCGCCCACTTTTGGTGGACTTCACTAGACCCAACTTAGTCATTCATTCATTCATTTTTTCGGTTCGCTCAGTGGCTGGTTCTTCACTTTTCTCCGGTCCATACTTGTTATTGATAAAATTCATATTTCAAGTTTTTCATTTTCAGAT</canonical_amplicon>
		<polymorphic_amplicon>TGGTGTCACTCACACTTTGTATACACTTCACCCCATCACTCCACCCACAGTGCACCTGCTCGCTCCGCCCACTTTTGGTGGACTTCACYAGACCCAACTTAGTCATTCATTCATTCATTTTTTCGGTTCGCTCAGTGGCTGGTTCTTCACTTTTCTCCGGTCCATACTTGTTATTGATAAAATTCATATTTCAAGTTTTTCATTTTCAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1743</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>392807</contig_pos>
        <strand></strand>
        <context>atatggtgat[C/T]caccggagtc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGCTTTCACGCAGAAATTCGAGGAACCCAGATCTGAAAATATGGTGAT</left_flank>
        <right_flank>CACCGGAGTCTCATTCTTTCCTTTTTCCTCCTTTTATATTTATTTCAATC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCAGTACACAAGCGTCTGAAAAGAGATGCGAATTATCTAGAAAAAGAAGAAAACCCAAGAAAAATGCATGAAACATTTGAATCAGTCAATGTTTGTTTTAAATTCATACGCTGTTAGAACATCAGATGTAAATGAGAAAAATGGAGAGGGAAAAATAATGGTGAATCGCACTTATTTCATTTTTGTGAGAGTTCACACAATTTTCTCTTCTCTTATGTTTCGCTCTGTAGGTAACAAAAATGAAGGTGAGAGACTCAGACGACCTTCTGTTGGCGACGAAGAAAGTGATGATACGTCCATACCAGACATACTGTTGAAAAGAGGGACAGAAAATGGGTATGCATGGGAGCAAACACGTGTTAAGGAAAGAAGTCTGTTTACCAGGGACTGTCGAACAGAGAGCTTTCCAGAATTTTCCCTATTTAAGTGCAATTATAGAATCGAGTATTGGCTTTCACGCAGAAATTCGAGGAACCCAGATCTGAAAATATGGTGATCCACCGGAGTCTCATTCTTTCCTTTTTCCTCCTTTTATATTTATTTCAATCGGTTCTCATTCATTTTTTCGGCAATTTTTTTTGGTTCAGAAATGTTCCACTTTCCGGCTTGTTTAAAGCTTTTCAACACAAAAGTTGTCGAAAAGCAATCGTAATAAGAACAAAAACCGAAAAATTCTGGTTACGGTGGTTTTCGTTACTGGTATTATTGGTCACGCCCACAAGCTTTACTCTTCCACAGCTCAGATCGTTATGTGCCAGAATGATAAAGTCTCAGGAATTTTTCAATCGAGCAAAACTTTTCAACGTTTTCTTGGATTTATTTTCTCACAGGAATCGTTCTGAAAACCAAAATCCTCCCAAAAGAAAGATTCGATACGAATTTTTTTGTATTCGAAAAATATTTCTAGTCGAAGACTATCCTGATAGTAAATACCCGGTACGTTTGAGAAATAGAGTACCAGAAACAATCCACCAACATGTTTTATGGTTCACTTTGAC</canonical>
            <polymorphic>TTTCAGTACACAAGCGTCTGAAAAGAGATGCGAATTATCTAGAAAAAGAAGAAAACCCAAGAAAAATGCATGAAACATTTGAATCAGTCAATGTTTGTTTTAAATTCATACGCTGTTAGAACATCAGATGTAAATGAGAAAAATGGAGAGGGAAAAATAATGGTGAATCGCACTTATTTCATTTTTGTGAGAGTTCACACAATTTTCTCTTCTCTTATGTTTCGCTCTGTAGGTAACAAAAATGAAGGTGAGAGACTCAGACGACCTTCTGTTGGCGACGAAGAAAGTGATGATACGTCCATACCAGACATACTGTTGAAAAGAGGGACAGAAAATGGGTATGCATGGGAGCAAACACGTGTTAAGGAAAGAAGTCTGTTTACCAGGGACTGTCGAACAGAGAGCTTTCCAGAATTTTCCCTATTTAAGTGCAATTATAGAATCGAGTATTGGCTTTCACGCAGAAATTCGAGGAACCCAGATCTGAAAATATGGTGATYCACCGGAGTCTCATTCTTTCCTTTTTCCTCCTTTTATATTTATTTCAATCGGTTCTCATTCATTTTTTCGGCAATTTTTTTTGGTTCAGAAATGTTCCACTTTCCGGCTTGTTTAAAGCTTTTCAACACAAAAGTTGTCGAAAAGCAATCGTAATAAGAACAAAAACCGAAAAATTCTGGTTACGGTGGTTTTCGTTACTGGTATTATTGGTCACGCCCACAAGCTTTACTCTTCCACAGCTCAGATCGTTATGTGCCAGAATGATAAAGTCTCAGGAATTTTTCAATCGAGCAAAACTTTTCAACGTTTTCTTGGATTTATTTTCTCACAGGAATCGTTCTGAAAACCAAAATCCTCCCAAAAGAAAGATTCGATACGAATTTTTTTGTATTCGAAAAATATTTCTAGTCGAAGACTATCCTGATAGTAAATACCCGGTACGTTTGAGAAATAGAGTACCAGAAACAATCCACCAACATGTTTTATGGTTCACTTTGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>480 256 248 16</canonical_bands>
                <polymorphic_bands>480 264 256</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGTGTTAAGGAAAGAAGTCTG</pcr_primer_p1>
		<pcr_primer_p2>GATTGAAAAATTCCTGAGACTTTA</pcr_primer_p2>
		<pcr_amplicon_size>433</pcr_amplicon_size>
		<canonical_amplicon>ACGTGTTAAGGAAAGAAGTCTGTTTACCAGGGACTGTCGAACAGAGAGCTTTCCAGAATTTTCCCTATTTAAGTGCAATTATAGAATCGAGTATTGGCTTTCACGCAGAAATTCGAGGAACCCAGATCTGAAAATATGGTGATCCACCGGAGTCTCATTCTTTCCTTTTTCCTCCTTTTATATTTATTTCAATCGGTTCTCATTCATTTTTTCGGCAATTTTTTTTGGTTCAGAAATGTTCCACTTTCCGGCTTGTTTAAAGCTTTTCAACACAAAAGTTGTCGAAAAGCAATCGTAATAAGAACAAAAACCGAAAAATTCTGGTTACGGTGGTTTTCGTTACTGGTATTATTGGTCACGCCCACAAGCTTTACTCTTCCACAGCTCAGATCGTTATGTGCCAGAATGATAAAGTCTCAGGAATTTTTCAATC</canonical_amplicon>
		<polymorphic_amplicon>ACGTGTTAAGGAAAGAAGTCTGTTTACCAGGGACTGTCGAACAGAGAGCTTTCCAGAATTTTCCCTATTTAAGTGCAATTATAGAATCGAGTATTGGCTTTCACGCAGAAATTCGAGGAACCCAGATCTGAAAATATGGTGATYCACCGGAGTCTCATTCTTTCCTTTTTCCTCCTTTTATATTTATTTCAATCGGTTCTCATTCATTTTTTCGGCAATTTTTTTTGGTTCAGAAATGTTCCACTTTCCGGCTTGTTTAAAGCTTTTCAACACAAAAGTTGTCGAAAAGCAATCGTAATAAGAACAAAAACCGAAAAATTCTGGTTACGGTGGTTTTCGTTACTGGTATTATTGGTCACGCCCACAAGCTTTACTCTTCCACAGCTCAGATCGTTATGTGCCAGAATGATAAAGTCTCAGGAATTTTTCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1744</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>396370</contig_pos>
        <strand>+</strand>
        <context>TTTTAAGAAG[A/C]AAAACTTAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATACATTTGAAAGTTTTCTTTGCAACACTTCATTCATATTTTTAAGAAG</left_flank>
        <right_flank>AAAACTTAATTCACTTGAGTCTTTGGATCCCTCAATCTGGATGTTGTTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATACAATGTTTTTCATGATACATGTAACCAACAATTTCATACATTGCTGATTTTTACTCATTAATTCATCAGAGCACTAACGGAGTATTGATTCAAGAAAAAACCATACTCCGGAGTATGATTTCTGGCTTTCTAACAAAAAAACTATTTGAAAAATGAAAAAAAAAATCTCCTTTTTAGTCATCCATTTAGATATCATTTGAGTCTTACACTCAGCACAAGGTTTCCGTTTCCAACACAATAATACATCTGTAAGTATGCATTCTCGCCCTTCTCAAATTTCTACTAAAAAACTAGGCTCTCGTCCCCGTCTTGGGTTGAATTCGTTTGTTATAATGTCTGCCTGAAATTAAATCTCAAATTTATGATGGGATTTAATTAATCGGGGTTATCGAAAACTATAAACAGAATTTGAAATAAAAATTTTCCAATTTTATAACTGTCCCATGAATACATTTGAAAGTTTTCTTTGCAACACTTCATTCATATTTTTAAGAAGAAAAACTTAATTCACTTGAGTCTTTGGATCCCTCAATCTGGATGTTGTTGAATTCCCAACAAACCCGAAAATAGCGATTTTGTTTTGTCGGCACTTCGGAAAAAGATTTTTTTTTTCAGTTTCCCAAAACATATTCGTTGATGAAAAAATTGCGCAGGTAATATGGGAAAGAGTGGTATATTGGGGGTGCAAAGAAAGGTTAGATGGGAAAAGGCGGCTCCCTCTTTTGAATGATGCCGCTGGAAATTGCGCAAGTACCTACTTTCTCATTTTTCGAAAATTGGGAAACAGAGAAAAACTCTCAAAAAAGAGTTTAAGAGGGATATGATTAAATTTTATAAAAAATAAAGACAGAAAAAATCCGGATAAGATGGGGAATAGGAAAATGGGTTACTGTAGCAAAAAATAAGGGGGGGGGGGAGGGGAAGAAAACAGGGTAAAAATTGATGATACTGTAAAAACTGTAAGACAATTCACAATTGAAGATTTCTTTCAAAAAAC</canonical>
            <polymorphic>ATACAATGTTTTTCATGATACATGTAACCAACAATTTCATACATTGCTGATTTTTACTCATTAATTCATCAGAGCACTAACGGAGTATTGATTCAAGAAAAAACCATACTCCGGAGTATGATTTCTGGCTTTCTAACAAAAAAACTATTTGAAAAATGAAAAAAAAAATCTCCTTTTTAGTCATCCATTTAGATATCATTTGAGTCTTACACTCAGCACAAGGTTTCCGTTTCCAACACAATAATACATCTGTAAGTATGCATTCTCGCCCTTCTCAAATTTCTACTAAAAAACTAGGCTCTCGTCCCCGTCTTGGGTTGAATTCGTTTGTTATAATGTCTGCCTGAAATTAAATCTCAAATTTATGATGGGATTTAATTAATCGGGGTTATCGAAAACTATAAACAGAATTTGAAATAAAAATTTTCCAATTTTATAACTGTCCCATGAATACATTTGAAAGTTTTCTTTGCAACACTTCATTCATATTTTTAAGAAGMAAAACTTAATTCACTTGAGTCTTTGGATCCCTCAATCTGGATGTTGTTGAATTCCCAACAAACCCGAAAATAGCGATTTTGTTTTGTCGGCACTTCGGAAAAAGATTTTTTTTTTCAGTTTCCCAAAACATATTCGTTGATGAAAAAATTGCGCAGGTAATATGGGAAAGAGTGGTATATTGGGGGTGCAAAGAAAGGTTAGATGGGAAAAGGCGGCTCCCTCTTTTGAATGATGCCGCTGGAAATTGCGCAAGTACCTACTTTCTCATTTTTCGAAAATTGGGAAACAGAGAAAAACTCTCAAAAAAGAGTTTAAGAGGGATATGATTAAATTTTATAAAAAATAAAGACAGAAAAAATCCGGATAAGATGGGGAATAGGAAAATGGGTTACTGTAGCAAAAAATAAGGGGGGGGGGGAGGGGAAGAAAACAGGGTAAAAATTGATGATACTGTAAAAACTGTAAGACAATTCACAATTGAAGATTTCTTTCAAAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTTTATAACTGTCCCATGAA</pcr_primer_p1>
		<pcr_primer_p2>ATACCACTCTTTCCCATATTACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAATTTTATAACTGTCCCATGAATACATTTGAAAGTTTTCTTTGCAACACTTCATTCATATTTTTAAGAAGAAAAACTTAATTCACTTGAGTCTTTGGATCCCTCAATCTGGATGTTGTTGAATTCCCAACAAACCCGAAAATAGCGATTTTGTTTTGTCGGCACTTCGGAAAAAGATTTTTTTTTTCAGTTTCCCAAAACATATTCGTTGATGAAAAAATTGCGCAGGTAATATGGGAAAGAGTGGTAT</canonical_amplicon>
		<polymorphic_amplicon>CAATTTTATAACTGTCCCATGAATACATTTGAAAGTTTTCTTTGCAACACTTCATTCATATTTTTAAGAAGMAAAACTTAATTCACTTGAGTCTTTGGATCCCTCAATCTGGATGTTGTTGAATTCCCAACAAACCCGAAAATAGCGATTTTGTTTTGTCGGCACTTCGGAAAAAGATTTTTTTTTTCAGTTTCCCAAAACATATTCGTTGATGAAAAAATTGCGCAGGTAATATGGGAAAGAGTGGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1745</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>409200</contig_pos>
        <strand>+</strand>
        <context>TGAAGAAAGA[A/C]AGCGCACTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATAATTTTGCCTATTCTATTTCCTATGGAGAAAAAATTCCTGAAGAAAGA</left_flank>
        <right_flank>AGCGCACTTTTTGCCACCTGCCCACTTTTTCTTCTTGTGCACATAGTTCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATACGAATGAGCTTGGAGCTCGCAAAATGGTCGCGAATGATAGCTGCGGACTAGTAATGTACGAAAACAAAAAAATTCACGCATTGAAAGGAAAAAAAAATTTACGCATTGAAAGGAAAAGGTAAAAGAGTGCGTTGTGGCATTATCTTGCCAATCTAGGGTCGCAGGTTCGAGGAACATTTGTGGATGTGACAATTTTTTTGTAATCTAATAAGCTTAAAAAATGCGGATCTTTTTTTTTGGACGATGGTCGCAAAAATTTTCTTTTGGATATGGTCGCAAAAAAATGTTTGACAAAATTTCCGAATATTCCTTCATGTATGCTTATAATCGAATATAACCTCTTCATCGTAAGAGTTCACATTCATAATAACTTGCCCCCCCCCCCCTCTAAACCCCCTCTAAACTTAGAAATCCTCTAATCTAAGAAAATGTCTTAAATCCTCTTTATAATTTTGCCTATTCTATTTCCTATGGAGAAAAAATTCCTGAAGAAAGAAAGCGCACTTTTTGCCACCTGCCCACTTTTTCTTCTTGTGCACATAGTTCAAATGCATAAAAAGTGTTCTACTTAAAAAAAACAAGATGTCAAAGATGATCAATCGTCGAGACACACCAAAAACTGTTCTAAAACATGAGCTCGGAGTCCAACAATTCATTTGAGTCCAAATCTTTGAAAAATAAATTAACAGAACAAATAGCCTAGCAGAATCCTTCGAGAAGAGCCTCGATTCCGCGGATTTCCATGACAGTCTGCCACATAACAACGAGATCGGCATGGCAAAGTGGTTGGCCTCCAAGTCGGATTATGGTGCAGTTGAGCTCAATAAGTCGGTCCAACTTGTTGAGATAGAGAGCAGTGGCGCCACATTGGACCTGAAAATCTAGAAATGAGCTGAAGGGTACGATTGTAAAATTACAGCAGTGTTGCGGATGAGAGTGAGACGCTGGATGTTCATACGAGTCTTGTTCTGAAAACAAATTGATTAAAATTAGGAAT</canonical>
            <polymorphic>ATACGAATGAGCTTGGAGCTCGCAAAATGGTCGCGAATGATAGCTGCGGACTAGTAATGTACGAAAACAAAAAAATTCACGCATTGAAAGGAAAAAAAAATTTACGCATTGAAAGGAAAAGGTAAAAGAGTGCGTTGTGGCATTATCTTGCCAATCTAGGGTCGCAGGTTCGAGGAACATTTGTGGATGTGACAATTTTTTTGTAATCTAATAAGCTTAAAAAATGCGGATCTTTTTTTTTGGACGATGGTCGCAAAAATTTTCTTTTGGATATGGTCGCAAAAAAATGTTTGACAAAATTTCCGAATATTCCTTCATGTATGCTTATAATCGAATATAACCTCTTCATCGTAAGAGTTCACATTCATAATAACTTGCCCCCCCCCCCCTCTAAACCCCCTCTAAACTTAGAAATCCTCTAATCTAAGAAAATGTCTTAAATCCTCTTTATAATTTTGCCTATTCTATTTCCTATGGAGAAAAAATTCCTGAAGAAAGAMAGCGCACTTTTTGCCACCTGCCCACTTTTTCTTCTTGTGCACATAGTTCAAATGCATAAAAAGTGTTCTACTTAAAAAAAACAAGATGTCAAAGATGATCAATCGTCGAGACACACCAAAAACTGTTCTAAAACATGAGCTCGGAGTCCAACAATTCATTTGAGTCCAAATCTTTGAAAAATAAATTAACAGAACAAATAGCCTAGCAGAATCCTTCGAGAAGAGCCTCGATTCCGCGGATTTCCATGACAGTCTGCCACATAACAACGAGATCGGCATGGCAAAGTGGTTGGCCTCCAAGTCGGATTATGGTGCAGTTGAGCTCAATAAGTCGGTCCAACTTGTTGAGATAGAGAGCAGTGGCGCCACATTGGACCTGAAAATCTAGAAATGAGCTGAAGGGTACGATTGTAAAATTACAGCAGTGTTGCGGATGAGAGTGAGACGCTGGATGTTCATACGAGTCTTGTTCTGAAAACAAATTGATTAAAATTAGGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACCCCCTCTAAACTTAGAAAT</pcr_primer_p1>
		<pcr_primer_p2>GAGCTCATGTTTTAGAACAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACCCCCTCTAAACTTAGAAATCCTCTAATCTAAGAAAATGTCTTAAATCCTCTTTATAATTTTGCCTATTCTATTTCCTATGGAGAAAAAATTCCTGAAGAAAGAAAGCGCACTTTTTGCCACCTGCCCACTTTTTCTTCTTGTGCACATAGTTCAAATGCATAAAAAGTGTTCTACTTAAAAAAAACAAGATGTCAAAGATGATCAATCGTCGAGACACACCAAAAACTGTTCTAAAACATGAGCTC</canonical_amplicon>
		<polymorphic_amplicon>AAACCCCCTCTAAACTTAGAAATCCTCTAATCTAAGAAAATGTCTTAAATCCTCTTTATAATTTTGCCTATTCTATTTCCTATGGAGAAAAAATTCCTGAAGAAAGAMAGCGCACTTTTTGCCACCTGCCCACTTTTTCTTCTTGTGCACATAGTTCAAATGCATAAAAAGTGTTCTACTTAAAAAAAACAAGATGTCAAAGATGATCAATCGTCGAGACACACCAAAAACTGTTCTAAAACATGAGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1746</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>451079</contig_pos>
        <strand>+</strand>
        <context>TGTTACCTAC[A/G]CAGAGAGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTCTTCATGTGTAAAACAAGCACAAATTGCATCCCTTTTTGTTACCTAC</left_flank>
        <right_flank>CAGAGAGAAAACAAAAGAACAAATCGGATGAGAGATAGACCAAGTGAGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGAACGTGTGAGCAGACAAATAATTTGTATCAATTCATCAAAGTCCCATCTATGATTTCCTGGCATTTCCTTTTTGCCCGGAATTAAGCACGATTTGACAAGGGTTTCCTTGAATTTGGTATCAGTATATCGAAATAGGGTTTTTAGACAATTTTTGGTCTATTCATCATAATATTCATCATAATATCACTAATATTATTCATCATAATATCACTAATACTTGACAAAATTTTCAGTTGACAAAATGTTGAAAGCTTCCACAAGAATCGAGATAACTACTTTCAAAGTCGACGGTTTGGACAGGTTTTTATTAGCGGAAACGCGGTATTTTGAATTAAAATTTTTGCTAGTACTGGAAGTACGATTACAGTATTCTTTAAAGTACCAGAGGCCTATTGAAAATTCAAAAATAGGTGCAAATGCACAAGTTGAGACCACAAAAATAGCCCTTCTTCATGTGTAAAACAAGCACAAATTGCATCCCTTTTTGTTACCTACGCAGAGAGAAAACAAAAGAACAAATCGGATGAGAGATAGACCAAGTGAGAAAATGAAATCTTCCCCCGTCGAGGTTGAGCACCTTTGAGCACTGACGTCAGGGCAGCGATACCAGAGGTTTCGATTTGCGTGACTTTTTGAACGTCTTTTTGTTATCAGTGGAAATACAGATAGATGATTCGAGTGGACTGTCTCTTTTTTTTAAAGAAAAAGGCAGCCTTTGATTCCGACGACAATGATTTTGGGTCTTTTGAAAAGCTAGGCGTTCGCTTAGTTCAAAGAAAGTTTTTTACAGAAAGAAAAATAATTTGCGCTCTTTGAAGTGGTGCGCGTTGAGGTTAAAGATCTGAAGAAGAAAAAGAACAAAGGTGTTGGAAAAAAGTCGTCAGAATTCAGGAATTTCAGATCTTTTGATTTCGCTACCAGGAAACAAAAAATCGTATTTTGAAAAGAGCAAGAATCGGATACAGAAGTGAAAAAAAGAGAAAAAAATTGGACTGA</canonical>
            <polymorphic>GGGAACGTGTGAGCAGACAAATAATTTGTATCAATTCATCAAAGTCCCATCTATGATTTCCTGGCATTTCCTTTTTGCCCGGAATTAAGCACGATTTGACAAGGGTTTCCTTGAATTTGGTATCAGTATATCGAAATAGGGTTTTTAGACAATTTTTGGTCTATTCATCATAATATTCATCATAATATCACTAATATTATTCATCATAATATCACTAATACTTGACAAAATTTTCAGTTGACAAAATGTTGAAAGCTTCCACAAGAATCGAGATAACTACTTTCAAAGTCGACGGTTTGGACAGGTTTTTATTAGCGGAAACGCGGTATTTTGAATTAAAATTTTTGCTAGTACTGGAAGTACGATTACAGTATTCTTTAAAGTACCAGAGGCCTATTGAAAATTCAAAAATAGGTGCAAATGCACAAGTTGAGACCACAAAAATAGCCCTTCTTCATGTGTAAAACAAGCACAAATTGCATCCCTTTTTGTTACCTACRCAGAGAGAAAACAAAAGAACAAATCGGATGAGAGATAGACCAAGTGAGAAAATGAAATCTTCCCCCGTCGAGGTTGAGCACCTTTGAGCACTGACGTCAGGGCAGCGATACCAGAGGTTTCGATTTGCGTGACTTTTTGAACGTCTTTTTGTTATCAGTGGAAATACAGATAGATGATTCGAGTGGACTGTCTCTTTTTTTTAAAGAAAAAGGCAGCCTTTGATTCCGACGACAATGATTTTGGGTCTTTTGAAAAGCTAGGCGTTCGCTTAGTTCAAAGAAAGTTTTTTACAGAAAGAAAAATAATTTGCGCTCTTTGAAGTGGTGCGCGTTGAGGTTAAAGATCTGAAGAAGAAAAAGAACAAAGGTGTTGGAAAAAAGTCGTCAGAATTCAGGAATTTCAGATCTTTTGATTTCGCTACCAGGAAACAAAAAATCGTATTTTGAAAAGAGCAAGAATCGGATACAGAAGTGAAAAAAAGAGAAAAAAATTGGACTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAGTTGAGACCACAAAAATAG</pcr_primer_p1>
		<pcr_primer_p2>CTGTATTTCCACTGATAACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACAAGTTGAGACCACAAAAATAGCCCTTCTTCATGTGTAAAACAAGCACAAATTGCATCCCTTTTTGTTACCTACGCAGAGAGAAAACAAAAGAACAAATCGGATGAGAGATAGACCAAGTGAGAAAATGAAATCTTCCCCCGTCGAGGTTGAGCACCTTTGAGCACTGACGTCAGGGCAGCGATACCAGAGGTTTCGATTTGCGTGACTTTTTGAACGTCTTTTTGTTATCAGTGGAAATACAG</canonical_amplicon>
		<polymorphic_amplicon>ACAAGTTGAGACCACAAAAATAGCCCTTCTTCATGTGTAAAACAAGCACAAATTGCATCCCTTTTTGTTACCTACRCAGAGAGAAAACAAAAGAACAAATCGGATGAGAGATAGACCAAGTGAGAAAATGAAATCTTCCCCCGTCGAGGTTGAGCACCTTTGAGCACTGACGTCAGGGCAGCGATACCAGAGGTTTCGATTTGCGTGACTTTTTGAACGTCTTTTTGTTATCAGTGGAAATACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1747</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>451304</contig_pos>
        <strand></strand>
        <context>AGCCTTTGAT[T/C]CCGACGACAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGATTCGAGTGGACTGTCTCTTTTTTTTAAAGAAAAAGGCAGCCTTTGAT</left_flank>
        <right_flank>CCGACGACAATGATTTTGGGTCTTTTGAAAAGCTAGGCGTTCGCTTAGTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAATTTTCAGTTGACAAAATGTTGAAAGCTTCCACAAGAATCGAGATAACTACTTTCAAAGTCGACGGTTTGGACAGGTTTTTATTAGCGGAAACGCGGTATTTTGAATTAAAATTTTTGCTAGTACTGGAAGTACGATTACAGTATTCTTTAAAGTACCAGAGGCCTATTGAAAATTCAAAAATAGGTGCAAATGCACAAGTTGAGACCACAAAAATAGCCCTTCTTCATGTGTAAAACAAGCACAAATTGCATCCCTTTTTGTTACCTACGCAGAGAGAAAACAAAAGAACAAATCGGATGAGAGATAGACCAAGTGAGAAAATGAAATCTTCCCCCGTCGAGGTTGAGCACCTTTGAGCACTGACGTCAGGGCAGCGATACCAGAGGTTTCGATTTGCGTGACTTTTTGAACGTCTTTTTGTTATCAGTGGAAATACAGATAGATGATTCGAGTGGACTGTCTCTTTTTTTTAAAGAAAAAGGCAGCCTTTGATTCCGACGACAATGATTTTGGGTCTTTTGAAAAGCTAGGCGTTCGCTTAGTTCAAAGAAAGTTTTTTACAGAAAGAAAAATAATTTGCGCTCTTTGAAGTGGTGCGCGTTGAGGTTAAAGATCTGAAGAAGAAAAAGAACAAAGGTGTTGGAAAAAAGTCGTCAGAATTCAGGAATTTCAGATCTTTTGATTTCGCTACCAGGAAACAAAAAATCGTATTTTGAAAAGAGCAAGAATCGGATACAGAAGTGAAAAAAAGAGAAAAAAATTGGACTGAATTCAGTTAATACTTGCAAATATCTTCTAGTTTTTGATGAATAGATGTAAAATTGAAAAATATCAAAAATCACTTGACTCGACGTTTTTGAAGCCATTATTGTGATTTGTAGCAGTTTAAAAGAATGAAGATTAAACTTTCAAGAAAAGATTACGAAAAATAATAAAACCTAGATTTTTGAAATTGTCTATCATCCTTAGGATTTCAAAATGTCAAAAAAAAAAC</canonical>
            <polymorphic>CAAAATTTTCAGTTGACAAAATGTTGAAAGCTTCCACAAGAATCGAGATAACTACTTTCAAAGTCGACGGTTTGGACAGGTTTTTATTAGCGGAAACGCGGTATTTTGAATTAAAATTTTTGCTAGTACTGGAAGTACGATTACAGTATTCTTTAAAGTACCAGAGGCCTATTGAAAATTCAAAAATAGGTGCAAATGCACAAGTTGAGACCACAAAAATAGCCCTTCTTCATGTGTAAAACAAGCACAAATTGCATCCCTTTTTGTTACCTACGCAGAGAGAAAACAAAAGAACAAATCGGATGAGAGATAGACCAAGTGAGAAAATGAAATCTTCCCCCGTCGAGGTTGAGCACCTTTGAGCACTGACGTCAGGGCAGCGATACCAGAGGTTTCGATTTGCGTGACTTTTTGAACGTCTTTTTGTTATCAGTGGAAATACAGATAGATGATTCGAGTGGACTGTCTCTTTTTTTTAAAGAAAAAGGCAGCCTTTGATYCCGACGACAATGATTTTGGGTCTTTTGAAAAGCTAGGCGTTCGCTTAGTTCAAAGAAAGTTTTTTACAGAAAGAAAAATAATTTGCGCTCTTTGAAGTGGTGCGCGTTGAGGTTAAAGATCTGAAGAAGAAAAAGAACAAAGGTGTTGGAAAAAAGTCGTCAGAATTCAGGAATTTCAGATCTTTTGATTTCGCTACCAGGAAACAAAAAATCGTATTTTGAAAAGAGCAAGAATCGGATACAGAAGTGAAAAAAAGAGAAAAAAATTGGACTGAATTCAGTTAATACTTGCAAATATCTTCTAGTTTTTGATGAATAGATGTAAAATTGAAAAATATCAAAAATCACTTGACTCGACGTTTTTGAAGCCATTATTGTGATTTGTAGCAGTTTAAAAGAATGAAGATTAAACTTTCAAGAAAAGATTACGAAAAATAATAAAACCTAGATTTTTGAAATTGTCTATCATCCTTAGGATTTCAAAATGTCAAAAAAAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>411 235 149 119 46 40</canonical_bands>
                <polymorphic_bands>411 281 149 119 40</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>301 263 201 120 59 40 16</canonical_bands>
                <polymorphic_bands>321 301 263 59 40 16</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>411 268 235 46 40</canonical_bands>
                <polymorphic_bands>411 281 268 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTTTTGAACGTCTTTTTGTTA</pcr_primer_p1>
		<pcr_primer_p2>AACACCTTTGTTCTTTTTCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ACTTTTTGAACGTCTTTTTGTTATCAGTGGAAATACAGATAGATGATTCGAGTGGACTGTCTCTTTTTTTTAAAGAAAAAGGCAGCCTTTGATTCCGACGACAATGATTTTGGGTCTTTTGAAAAGCTAGGCGTTCGCTTAGTTCAAAGAAAGTTTTTTACAGAAAGAAAAATAATTTGCGCTCTTTGAAGTGGTGCGCGTTGAGGTTAAAGATCTGAAGAAGAAAAAGAACAAAGGTGTT</canonical_amplicon>
		<polymorphic_amplicon>ACTTTTTGAACGTCTTTTTGTTATCAGTGGAAATACAGATAGATGATTCGAGTGGACTGTCTCTTTTTTTTAAAGAAAAAGGCAGCCTTTGATYCCGACGACAATGATTTTGGGTCTTTTGAAAAGCTAGGCGTTCGCTTAGTTCAAAGAAAGTTTTTTACAGAAAGAAAAATAATTTGCGCTCTTTGAAGTGGTGCGCGTTGAGGTTAAAGATCTGAAGAAGAAAAAGAACAAAGGTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1749</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>486690</contig_pos>
        <strand>+</strand>
        <context>CATATCCAGT[A/G]KCATGCATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAACCGAAAATAAGAAACTAGAAAAATAATGAGTACAAGACATATCCAGT</left_flank>
        <right_flank>TCATGCATAAATCTTGGAAAACGAGATGAGAGGCTAACCAGAGAAGGACC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGGAAAATTGGGCCCACCCAAGGTATAGGCGAATTTTGAAAATTTCCAAAATTTTTCCGAACAGAAATTTCATTATAAAATTGTTAAGATATGAAATTTTGCATGATTTTAAGTATAACACAGAAAGTTTCAAGTTCTAAAATCTCCTAGGAGTGAAAAAAATTGAATGTGAAAATTTCCAATTTTACACTGAAAAAGTGATTTTTTGGTGCTGAAACTGAAATTTCATCACATTAGAGGTTTTTATGCAGATTTTAAAAACGGGTTTATAGGTTTTAAAAGGCGCTCTTTCATCCTGTATGGTTGGTTTAACCCAATTAGCCGGACAACTTGAAAAATTCTCTTGTAAGAAATATGGCTCAAAAGTTAATAGCAACTGTGGCGCATGATGTCCTTAAATCTGGTTCTCAGTTTTCTGAAAATCGACACTTCTCCTTAGCATACCATTAACCGAAAATAAGAAACTAGAAAAATAATGAGTACAAGACATATCCAGTATCATGCATAAATCTTGGAAAACGAGATGAGAGGCTAACCAGAGAAGGACCAAGTCGACTAAAACCAAACAAGTGCACAAATAAATGGTCATAAAGCTAAAAGTGAAGCGAGTCATAAAACAAGCGTCTTCTTTCTGGATGCAGATGGCTCCGATGGCCCGTGTCTCAGAACGCACGAACCTTTTGTGGGTGGGACCCCGAATTGAATGAGAAAAATGGAAACGAAAAGCGGAGGAAATACGGGAGGAAAAATTGAACGACAAAAGCTGACGGGATAGGAATCGTAACGAGAATTCGATGTGACTGACGAGTGACGGCTCGAAAATGGGTTGCGGGGAAACGGGAAGCCGAATGGAAGTGGAAAATGGTAGGATGAGCTGTTCTTGGGAGAATGAATCACCTTGAGGAAAGGAAATGAGCCATAAATCCGACCGAACGGAGAATTGGGAAAAGAGACGCCTGCTGGGAAGAATAGATGGAAAATTCGAAAATGGTCAATTC</canonical>
            <polymorphic>ATTGGAAAATTGGGCCCACCCAAGGTATAGGCGAATTTTGAAAATTTCCAAAATTTTTCCGAACAGAAATTTCATTATAAAATTGTTAAGATATGAAATTTTGCATGATTTTAAGTATAACACAGAAAGTTTCAAGTTCTAAAATCTCCTAGGAGTGAAAAAAATTGAATGTGAAAATTTCCAATTTTACACTGAAAAAGTGATTTTTTGGTGCTGAAACTGAAATTTCATCACATTAGAGGTTTTTATGCAGATTTTAAAAACGGGTTTATAGGTTTTAAAAGGCGCTCTTTCATCCTGTATGGTTGGTTTAACCCAATTAGCCGGACAACTTGAAAAATTCTCTTGTAAGAAATATGGCTCAAAAGTTAATAGCAACTGTGGCGCATGATGTCCTTAAATCTGGTTCTCAGTTTTCTGAAAATCGACACTTCTCCTTAGCATACCATTAACCGAAAATAAGAAACTAGAAAAATAATGAGTACAAGACATATCCAGTRTCATGCATAAATCTTGGAAAACGAGATGAGAGGCTAACCAGAGAAGGACCAAGTCGACTAAAACCAAACAAGTGCACAAATAAATGGTCATAAAGCTAAAAGTGAAGCGAGTCATAAAACAAGCGTCTTCTTTCTGGATGCAGATGGCTCCGATGGCCCGTGTCTCAGAACGCACGAACCTTTTGTGGGTGGGACCCCGAATTGAATGAGAAAAATGGAAACGAAAAGCGGAGGAAATACGGGAGGAAAAATTGAACGACAAAAGCTGACGGGATAGGAATCGTAACGAGAATTCGATGTGACTGACGAGTGACGGCTCGAAAATGGGTTGCGGGGAAACGGGAAGCCGAATGGAAGTGGAAAATGGTAGGATGAGCTGTTCTTGGGAGAATGAATCACCTTGAGGAAAGGAAATGAGCCATAAATCCGACCGAACGGAGAATTGGGAAAAGAGACGCCTGCTGGGAAGAATAGATGGAAAATTCGAAAATGGTCAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATGTCCTTAAATCTGGTTCT</pcr_primer_p1>
		<pcr_primer_p2>GAAAGAAGACGCTTGTTTTATG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATGATGTCCTTAAATCTGGTTCTCAGTTTTCTGAAAATCGACACTTCTCCTTAGCATACCATTAACCGAAAATAAGAAACTAGAAAAATAATGAGTACAAGACATATCCAGTATCATGCATAAATCTTGGAAAACGAGATGAGAGGCTAACCAGAGAAGGACCAAGTCGACTAAAACCAAACAAGTGCACAAATAAATGGTCATAAAGCTAAAAGTGAAGCGAGTCATAAAACAAGCGTCTTCTTTC</canonical_amplicon>
		<polymorphic_amplicon>ATGATGTCCTTAAATCTGGTTCTCAGTTTTCTGAAAATCGACACTTCTCCTTAGCATACCATTAACCGAAAATAAGAAACTAGAAAAATAATGAGTACAAGACATATCCAGTRTCATGCATAAATCTTGGAAAACGAGATGAGAGGCTAACCAGAGAAGGACCAAGTCGACTAAAACCAAACAAGTGCACAAATAAATGGTCATAAAGCTAAAAGTGAAGCGAGTCATAAAACAAGCGTCTTCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1750</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>486691</contig_pos>
        <strand>+</strand>
        <context>ATATCCAGTR[G/T]CATGCATAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACCGAAAATAAGAAACTAGAAAAATAATGAGTACAAGACATATCCAGTA</left_flank>
        <right_flank>CATGCATAAATCTTGGAAAACGAGATGAGAGGCTAACCAGAGAAGGACCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGAAAATTGGGCCCACCCAAGGTATAGGCGAATTTTGAAAATTTCCAAAATTTTTCCGAACAGAAATTTCATTATAAAATTGTTAAGATATGAAATTTTGCATGATTTTAAGTATAACACAGAAAGTTTCAAGTTCTAAAATCTCCTAGGAGTGAAAAAAATTGAATGTGAAAATTTCCAATTTTACACTGAAAAAGTGATTTTTTGGTGCTGAAACTGAAATTTCATCACATTAGAGGTTTTTATGCAGATTTTAAAAACGGGTTTATAGGTTTTAAAAGGCGCTCTTTCATCCTGTATGGTTGGTTTAACCCAATTAGCCGGACAACTTGAAAAATTCTCTTGTAAGAAATATGGCTCAAAAGTTAATAGCAACTGTGGCGCATGATGTCCTTAAATCTGGTTCTCAGTTTTCTGAAAATCGACACTTCTCCTTAGCATACCATTAACCGAAAATAAGAAACTAGAAAAATAATGAGTACAAGACATATCCAGTATCATGCATAAATCTTGGAAAACGAGATGAGAGGCTAACCAGAGAAGGACCAAGTCGACTAAAACCAAACAAGTGCACAAATAAATGGTCATAAAGCTAAAAGTGAAGCGAGTCATAAAACAAGCGTCTTCTTTCTGGATGCAGATGGCTCCGATGGCCCGTGTCTCAGAACGCACGAACCTTTTGTGGGTGGGACCCCGAATTGAATGAGAAAAATGGAAACGAAAAGCGGAGGAAATACGGGAGGAAAAATTGAACGACAAAAGCTGACGGGATAGGAATCGTAACGAGAATTCGATGTGACTGACGAGTGACGGCTCGAAAATGGGTTGCGGGGAAACGGGAAGCCGAATGGAAGTGGAAAATGGTAGGATGAGCTGTTCTTGGGAGAATGAATCACCTTGAGGAAAGGAAATGAGCCATAAATCCGACCGAACGGAGAATTGGGAAAAGAGACGCCTGCTGGGAAGAATAGATGGAAAATTCGAAAATGGTCAATTCG</canonical>
            <polymorphic>TTGGAAAATTGGGCCCACCCAAGGTATAGGCGAATTTTGAAAATTTCCAAAATTTTTCCGAACAGAAATTTCATTATAAAATTGTTAAGATATGAAATTTTGCATGATTTTAAGTATAACACAGAAAGTTTCAAGTTCTAAAATCTCCTAGGAGTGAAAAAAATTGAATGTGAAAATTTCCAATTTTACACTGAAAAAGTGATTTTTTGGTGCTGAAACTGAAATTTCATCACATTAGAGGTTTTTATGCAGATTTTAAAAACGGGTTTATAGGTTTTAAAAGGCGCTCTTTCATCCTGTATGGTTGGTTTAACCCAATTAGCCGGACAACTTGAAAAATTCTCTTGTAAGAAATATGGCTCAAAAGTTAATAGCAACTGTGGCGCATGATGTCCTTAAATCTGGTTCTCAGTTTTCTGAAAATCGACACTTCTCCTTAGCATACCATTAACCGAAAATAAGAAACTAGAAAAATAATGAGTACAAGACATATCCAGTAKCATGCATAAATCTTGGAAAACGAGATGAGAGGCTAACCAGAGAAGGACCAAGTCGACTAAAACCAAACAAGTGCACAAATAAATGGTCATAAAGCTAAAAGTGAAGCGAGTCATAAAACAAGCGTCTTCTTTCTGGATGCAGATGGCTCCGATGGCCCGTGTCTCAGAACGCACGAACCTTTTGTGGGTGGGACCCCGAATTGAATGAGAAAAATGGAAACGAAAAGCGGAGGAAATACGGGAGGAAAAATTGAACGACAAAAGCTGACGGGATAGGAATCGTAACGAGAATTCGATGTGACTGACGAGTGACGGCTCGAAAATGGGTTGCGGGGAAACGGGAAGCCGAATGGAAGTGGAAAATGGTAGGATGAGCTGTTCTTGGGAGAATGAATCACCTTGAGGAAAGGAAATGAGCCATAAATCCGACCGAACGGAGAATTGGGAAAAGAGACGCCTGCTGGGAAGAATAGATGGAAAATTCGAAAATGGTCAATTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATGTCCTTAAATCTGGTTCT</pcr_primer_p1>
		<pcr_primer_p2>GAAAGAAGACGCTTGTTTTATG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATGATGTCCTTAAATCTGGTTCTCAGTTTTCTGAAAATCGACACTTCTCCTTAGCATACCATTAACCGAAAATAAGAAACTAGAAAAATAATGAGTACAAGACATATCCAGTATCATGCATAAATCTTGGAAAACGAGATGAGAGGCTAACCAGAGAAGGACCAAGTCGACTAAAACCAAACAAGTGCACAAATAAATGGTCATAAAGCTAAAAGTGAAGCGAGTCATAAAACAAGCGTCTTCTTTC</canonical_amplicon>
		<polymorphic_amplicon>ATGATGTCCTTAAATCTGGTTCTCAGTTTTCTGAAAATCGACACTTCTCCTTAGCATACCATTAACCGAAAATAAGAAACTAGAAAAATAATGAGTACAAGACATATCCAGTAKCATGCATAAATCTTGGAAAACGAGATGAGAGGCTAACCAGAGAAGGACCAAGTCGACTAAAACCAAACAAGTGCACAAATAAATGGTCATAAAGCTAAAAGTGAAGCGAGTCATAAAACAAGCGTCTTCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1751</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>486713</contig_pos>
        <strand>+</strand>
        <context>CTTGGAAAAC[A/G]AGATGAGAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATAATGAGTACAAGACATATCCAGTATCATGCATAAATCTTGGAAAAC</left_flank>
        <right_flank>AGATGAGAGGCTAACCAGAGAAGGACCAAGTCGACTAAAACCAAACAAGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTATAGGCGAATTTTGAAAATTTCCAAAATTTTTCCGAACAGAAATTTCATTATAAAATTGTTAAGATATGAAATTTTGCATGATTTTAAGTATAACACAGAAAGTTTCAAGTTCTAAAATCTCCTAGGAGTGAAAAAAATTGAATGTGAAAATTTCCAATTTTACACTGAAAAAGTGATTTTTTGGTGCTGAAACTGAAATTTCATCACATTAGAGGTTTTTATGCAGATTTTAAAAACGGGTTTATAGGTTTTAAAAGGCGCTCTTTCATCCTGTATGGTTGGTTTAACCCAATTAGCCGGACAACTTGAAAAATTCTCTTGTAAGAAATATGGCTCAAAAGTTAATAGCAACTGTGGCGCATGATGTCCTTAAATCTGGTTCTCAGTTTTCTGAAAATCGACACTTCTCCTTAGCATACCATTAACCGAAAATAAGAAACTAGAAAAATAATGAGTACAAGACATATCCAGTATCATGCATAAATCTTGGAAAACGAGATGAGAGGCTAACCAGAGAAGGACCAAGTCGACTAAAACCAAACAAGTGCACAAATAAATGGTCATAAAGCTAAAAGTGAAGCGAGTCATAAAACAAGCGTCTTCTTTCTGGATGCAGATGGCTCCGATGGCCCGTGTCTCAGAACGCACGAACCTTTTGTGGGTGGGACCCCGAATTGAATGAGAAAAATGGAAACGAAAAGCGGAGGAAATACGGGAGGAAAAATTGAACGACAAAAGCTGACGGGATAGGAATCGTAACGAGAATTCGATGTGACTGACGAGTGACGGCTCGAAAATGGGTTGCGGGGAAACGGGAAGCCGAATGGAAGTGGAAAATGGTAGGATGAGCTGTTCTTGGGAGAATGAATCACCTTGAGGAAAGGAAATGAGCCATAAATCCGACCGAACGGAGAATTGGGAAAAGAGACGCCTGCTGGGAAGAATAGATGGAAAATTCGAAAATGGTCAATTCGGGATGGGAACCGGAATGAGAAG</canonical>
            <polymorphic>GGTATAGGCGAATTTTGAAAATTTCCAAAATTTTTCCGAACAGAAATTTCATTATAAAATTGTTAAGATATGAAATTTTGCATGATTTTAAGTATAACACAGAAAGTTTCAAGTTCTAAAATCTCCTAGGAGTGAAAAAAATTGAATGTGAAAATTTCCAATTTTACACTGAAAAAGTGATTTTTTGGTGCTGAAACTGAAATTTCATCACATTAGAGGTTTTTATGCAGATTTTAAAAACGGGTTTATAGGTTTTAAAAGGCGCTCTTTCATCCTGTATGGTTGGTTTAACCCAATTAGCCGGACAACTTGAAAAATTCTCTTGTAAGAAATATGGCTCAAAAGTTAATAGCAACTGTGGCGCATGATGTCCTTAAATCTGGTTCTCAGTTTTCTGAAAATCGACACTTCTCCTTAGCATACCATTAACCGAAAATAAGAAACTAGAAAAATAATGAGTACAAGACATATCCAGTATCATGCATAAATCTTGGAAAACRAGATGAGAGGCTAACCAGAGAAGGACCAAGTCGACTAAAACCAAACAAGTGCACAAATAAATGGTCATAAAGCTAAAAGTGAAGCGAGTCATAAAACAAGCGTCTTCTTTCTGGATGCAGATGGCTCCGATGGCCCGTGTCTCAGAACGCACGAACCTTTTGTGGGTGGGACCCCGAATTGAATGAGAAAAATGGAAACGAAAAGCGGAGGAAATACGGGAGGAAAAATTGAACGACAAAAGCTGACGGGATAGGAATCGTAACGAGAATTCGATGTGACTGACGAGTGACGGCTCGAAAATGGGTTGCGGGGAAACGGGAAGCCGAATGGAAGTGGAAAATGGTAGGATGAGCTGTTCTTGGGAGAATGAATCACCTTGAGGAAAGGAAATGAGCCATAAATCCGACCGAACGGAGAATTGGGAAAAGAGACGCCTGCTGGGAAGAATAGATGGAAAATTCGAAAATGGTCAATTCGGGATGGGAACCGGAATGAGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATGTCCTTAAATCTGGTTCT</pcr_primer_p1>
		<pcr_primer_p2>GAAAGAAGACGCTTGTTTTATG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATGATGTCCTTAAATCTGGTTCTCAGTTTTCTGAAAATCGACACTTCTCCTTAGCATACCATTAACCGAAAATAAGAAACTAGAAAAATAATGAGTACAAGACATATCCAGTATCATGCATAAATCTTGGAAAACGAGATGAGAGGCTAACCAGAGAAGGACCAAGTCGACTAAAACCAAACAAGTGCACAAATAAATGGTCATAAAGCTAAAAGTGAAGCGAGTCATAAAACAAGCGTCTTCTTTC</canonical_amplicon>
		<polymorphic_amplicon>ATGATGTCCTTAAATCTGGTTCTCAGTTTTCTGAAAATCGACACTTCTCCTTAGCATACCATTAACCGAAAATAAGAAACTAGAAAAATAATGAGTACAAGACATATCCAGTATCATGCATAAATCTTGGAAAACRAGATGAGAGGCTAACCAGAGAAGGACCAAGTCGACTAAAACCAAACAAGTGCACAAATAAATGGTCATAAAGCTAAAAGTGAAGCGAGTCATAAAACAAGCGTCTTCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1752</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>538408</contig_pos>
        <strand>+</strand>
        <context>AATCAGTGAC[C/T]CGATTCCCCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTGTGCTGCTCCAGAGAAAAAAATTGGGGTAAGTGTGTTAATCAGTGAC</left_flank>
        <right_flank>CGATTCCCCCCTCGTTTTTTCTTATTCTTTTTTTCTTATTTCGTCGGCGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTAGAGCATGTCTTGAGACATCATACCATCTGTGGGTGGTGGGTCATTTGAATGTGTCTGTATGCCATTGAGAAGAGTTTAACTTCCGATATTTTGAAACTGTACATTCTGCTTTGAGCTCGAACCAAAAAACGAGTAGATTGGAAATCAGTTTTTTTCGCTATCAGGAAAATGTATAATTCGAGGTATCGGAACACAAGAAGGAAACGAACAAATTAAATCATTTTATTGGGTTGTTCCAAATAATTTTTTTTGCCGTCTGTTAATTTACGAAGCTGTTCCTGCTAATCTCATCACTTTGAACTCAGTTATTACCAAAAGACTATTATTCCTCTTGAGGCTTCATTTCTCTTCCAGAAAACCATGAAGATCAACCTTAATTGCCTGTACGGGTGGTCTTTTTTGCAATCAATTCCTGAACTTTACACCCGAACACTCATGTGTGCTTCTGTGCTGCTCCAGAGAAAAAAATTGGGGTAAGTGTGTTAATCAGTGACTCGATTCCCCCCTCGTTTTTTCTTATTCTTTTTTTCTTATTTCGTCGGCGAGTGTAGAGAGAAAATAAAGATAAAGATAAGTCTCAAGATAGGTTGGTAATCACTAAAGTGGTTGTGTGGATAAGAGTAGCAAAATGGCAGGAAGAGCACTTTGCGCGCACACACTGTACTCATTGTTCTGGATAAAAGTCTTTGGCTTGTTTACCCGTTGGGATGTCTGTTTCTCCGCATTTAGCAAGCTTTCTAGTCAATCTCCTTGGTCTAACCCAAAATGCCGTTTCTTTTCTCGTATCTCCCCGATATACCAGCGCTACCGATGAGGCTCTCTCTCTCTCGATCTTTCCGCCAACGACTATCCGTGGGGGCGCCCCGGGGAGGGAAAGAGGCATCGGAGAAGATTTTTGCTATTTGCTCTTGAGAAAGAGACTTTTTCCATTACGTCGGGGCCTTATGTGTGTTAGAGAGTGAATTGTGCAGACACTTTCCAGCTACCTAGAATTA</canonical>
            <polymorphic>AACTAGAGCATGTCTTGAGACATCATACCATCTGTGGGTGGTGGGTCATTTGAATGTGTCTGTATGCCATTGAGAAGAGTTTAACTTCCGATATTTTGAAACTGTACATTCTGCTTTGAGCTCGAACCAAAAAACGAGTAGATTGGAAATCAGTTTTTTTCGCTATCAGGAAAATGTATAATTCGAGGTATCGGAACACAAGAAGGAAACGAACAAATTAAATCATTTTATTGGGTTGTTCCAAATAATTTTTTTTGCCGTCTGTTAATTTACGAAGCTGTTCCTGCTAATCTCATCACTTTGAACTCAGTTATTACCAAAAGACTATTATTCCTCTTGAGGCTTCATTTCTCTTCCAGAAAACCATGAAGATCAACCTTAATTGCCTGTACGGGTGGTCTTTTTTGCAATCAATTCCTGAACTTTACACCCGAACACTCATGTGTGCTTCTGTGCTGCTCCAGAGAAAAAAATTGGGGTAAGTGTGTTAATCAGTGACYCGATTCCCCCCTCGTTTTTTCTTATTCTTTTTTTCTTATTTCGTCGGCGAGTGTAGAGAGAAAATAAAGATAAAGATAAGTCTCAAGATAGGTTGGTAATCACTAAAGTGGTTGTGTGGATAAGAGTAGCAAAATGGCAGGAAGAGCACTTTGCGCGCACACACTGTACTCATTGTTCTGGATAAAAGTCTTTGGCTTGTTTACCCGTTGGGATGTCTGTTTCTCCGCATTTAGCAAGCTTTCTAGTCAATCTCCTTGGTCTAACCCAAAATGCCGTTTCTTTTCTCGTATCTCCCCGATATACCAGCGCTACCGATGAGGCTCTCTCTCTCTCGATCTTTCCGCCAACGACTATCCGTGGGGGCGCCCCGGGGAGGGAAAGAGGCATCGGAGAAGATTTTTGCTATTTGCTCTTGAGAAAGAGACTTTTTCCATTACGTCGGGGCCTTATGTGTGTTAGAGAGTGAATTGTGCAGACACTTTCCAGCTACCTAGAATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>333 317 166 123 61</canonical_bands>
                <polymorphic_bands>650 166 123 61</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>498 497 5</canonical_bands>
                <polymorphic_bands>502 498</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATCAACCTTAATTGCCTGTA</pcr_primer_p1>
		<pcr_primer_p2>ACACAACCACTTTAGTGATTACC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGATCAACCTTAATTGCCTGTACGGGTGGTCTTTTTTGCAATCAATTCCTGAACTTTACACCCGAACACTCATGTGTGCTTCTGTGCTGCTCCAGAGAAAAAAATTGGGGTAAGTGTGTTAATCAGTGACTCGATTCCCCCCTCGTTTTTTCTTATTCTTTTTTTCTTATTTCGTCGGCGAGTGTAGAGAGAAAATAAAGATAAAGATAAGTCTCAAGATAGGTTGGTAATCACTAAAGTGGTTGTGT</canonical_amplicon>
		<polymorphic_amplicon>AGATCAACCTTAATTGCCTGTACGGGTGGTCTTTTTTGCAATCAATTCCTGAACTTTACACCCGAACACTCATGTGTGCTTCTGTGCTGCTCCAGAGAAAAAAATTGGGGTAAGTGTGTTAATCAGTGACYCGATTCCCCCCTCGTTTTTTCTTATTCTTTTTTTCTTATTTCGTCGGCGAGTGTAGAGAGAAAATAAAGATAAAGATAAGTCTCAAGATAGGTTGGTAATCACTAAAGTGGTTGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1753</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>582137</contig_pos>
        <strand>+</strand>
        <context>ACCACATGGG[G/T]TCTGTCTTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGTTGGTCCTTCTTTTTCCATCTTTTGAAAGCATATTCGGACCACATGGG</left_flank>
        <right_flank>TCTGTCTTTAATTCAGGTCTTTAGAGATTAAAAATTTCATATCTTCCTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTACAAGAGAAAAAAGAAGATAGAGCTCAGAAGTGGAGGAAAAAGACAAATGTTACATTTCGCCGAGACACAAGAACTTTGAAAATAGAGGGACCCTCGGCACACAAAACTGCAGGAATGATCGTTGGTGCTGCGCTCGACGCAACGCGGTGTAGTGTGGGAAGGATGAGACAAGAAAAGAGATAGAAGTGAGAGAGAGAATCGCAAGACGTTTTAGTTTGGTTGCTCAATGAGTTGCTCCAGGCGCGGAGCAAAATGTAGCCTTATGCTCCTGAAGGTTTTCCTGGGATCGGATATGTGCCGCTCGATTTATATATAGCATGCACTCTAAGCGAAATATAATTAATTCCAAGCTCTCCCCTCTTTTTATATGTTTGTGGATGACGTCCGTCAAATAGAATATTTGGAGATTTCTAGAAAAGAGAATCGGAAATTTGATTAGTTGCGTGGTTGGTCCTTCTTTTTCCATCTTTTGAAAGCATATTCGGACCACATGGGGTCTGTCTTTAATTCAGGTCTTTAGAGATTAAAAATTTCATATCTTCCTTATATCTATCTACACGTGTTTGTTGGCCCTCCATAGACTTTCGAAAAGCTTAAAAAATAAATATAGATTTACGTGACCCTTCGAGCGACAAACCAGTGAAAACTAGGTTAAATCGCGCCGAAGGCGCACCAGCCAGCTGGTTTGACATGCCACTCTATTTTAAATAACTATGATCTAGCAAAAAAAAAACAAAAATTGAACCAATATTTGTTTTCTCAAAAGTACGACTCTGGACAAAACCTTTCGAATTCCCTTGCCCTTTATATTTTTTGGGACATGGGACATAACATAAAACACAAAATGAACCCAGTGCAAACGTTGCAGCACAAACCATTTGCATAATACGTTTTCCTTAGAATCAAAAAATAAGAGGATGAACTTTCGATACAAATCCATGTCTGAGATTATCAGAGCAGTAAATAAAATCAAAAAACAAGAACACGTCTCTGCTC</canonical>
            <polymorphic>AGTACAAGAGAAAAAAGAAGATAGAGCTCAGAAGTGGAGGAAAAAGACAAATGTTACATTTCGCCGAGACACAAGAACTTTGAAAATAGAGGGACCCTCGGCACACAAAACTGCAGGAATGATCGTTGGTGCTGCGCTCGACGCAACGCGGTGTAGTGTGGGAAGGATGAGACAAGAAAAGAGATAGAAGTGAGAGAGAGAATCGCAAGACGTTTTAGTTTGGTTGCTCAATGAGTTGCTCCAGGCGCGGAGCAAAATGTAGCCTTATGCTCCTGAAGGTTTTCCTGGGATCGGATATGTGCCGCTCGATTTATATATAGCATGCACTCTAAGCGAAATATAATTAATTCCAAGCTCTCCCCTCTTTTTATATGTTTGTGGATGACGTCCGTCAAATAGAATATTTGGAGATTTCTAGAAAAGAGAATCGGAAATTTGATTAGTTGCGTGGTTGGTCCTTCTTTTTCCATCTTTTGAAAGCATATTCGGACCACATGGGKTCTGTCTTTAATTCAGGTCTTTAGAGATTAAAAATTTCATATCTTCCTTATATCTATCTACACGTGTTTGTTGGCCCTCCATAGACTTTCGAAAAGCTTAAAAAATAAATATAGATTTACGTGACCCTTCGAGCGACAAACCAGTGAAAACTAGGTTAAATCGCGCCGAAGGCGCACCAGCCAGCTGGTTTGACATGCCACTCTATTTTAAATAACTATGATCTAGCAAAAAAAAAACAAAAATTGAACCAATATTTGTTTTCTCAAAAGTACGACTCTGGACAAAACCTTTCGAATTCCCTTGCCCTTTATATTTTTTGGGACATGGGACATAACATAAAACACAAAATGAACCCAGTGCAAACGTTGCAGCACAAACCATTTGCATAATACGTTTTCCTTAGAATCAAAAAATAAGAGGATGAACTTTCGATACAAATCCATGTCTGAGATTATCAGAGCAGTAAATAAAATCAAAAAACAAGAACACGTCTCTGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGTTGGTCCTTCTTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CCAGAGTCGTACTTTTGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>334</pcr_amplicon_size>
		<canonical_amplicon>GTGGTTGGTCCTTCTTTTTCCATCTTTTGAAAGCATATTCGGACCACATGGGGTCTGTCTTTAATTCAGGTCTTTAGAGATTAAAAATTTCATATCTTCCTTATATCTATCTACACGTGTTTGTTGGCCCTCCATAGACTTTCGAAAAGCTTAAAAAATAAATATAGATTTACGTGACCCTTCGAGCGACAAACCAGTGAAAACTAGGTTAAATCGCGCCGAAGGCGCACCAGCCAGCTGGTTTGACATGCCACTCTATTTTAAATAACTATGATCTAGCAAAAAAAAAACAAAAATTGAACCAATATTTGTTTTCTCAAAAGTACGACTCTGG</canonical_amplicon>
		<polymorphic_amplicon>GTGGTTGGTCCTTCTTTTTCCATCTTTTGAAAGCATATTCGGACCACATGGGKTCTGTCTTTAATTCAGGTCTTTAGAGATTAAAAATTTCATATCTTCCTTATATCTATCTACACGTGTTTGTTGGCCCTCCATAGACTTTCGAAAAGCTTAAAAAATAAATATAGATTTACGTGACCCTTCGAGCGACAAACCAGTGAAAACTAGGTTAAATCGCGCCGAAGGCGCACCAGCCAGCTGGTTTGACATGCCACTCTATTTTAAATAACTATGATCTAGCAAAAAAAAAACAAAAATTGAACCAATATTTGTTTTCTCAAAAGTACGACTCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1754</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>583779</contig_pos>
        <strand>+</strand>
        <context>GTAATAAGAC[A/T]GAAAAAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTAGAGCGCACAGCATCTCATGTGCGCAGCTTATACTTTGTAATAAGAC</left_flank>
        <right_flank>GAAAAAAAATGTCCGAGTCTTATGAACATTTCAAATCTAGTATGTCAGCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTAATAAAGATATGGATCCGGCGTGAGTAGTCATCGCAGGATATCAAAAGATTGCTCTGGACAAATACGTGGCGCAAAGAACAAGACAATTTTTTCAGTTTACGTGCAAAAGAAAGGGACAAAAACCTTTCGTGAATGGATGGGGTCAGTGGTGTGGGAAGAGCAAAAAAGAGACCAGCAAGAAAAAAAGGGTGGATACACTTCAAGTGTTGGGAAGAATGTCACTTAAAATGCAAAATTCTCCTTTTTGCCTCACTAATTTCAAATTCCATTTTCCCGAAAGGTTTCTTGGAATTAGTGTGACCTTAGACAAAATATTACTAGGGCATAACGACCATAATCCGATTTTTTTTGAGCACAAAAGAGTTGTAAGCTGTTCGTATCTATTGGAAGTTTATAGTTTTGTACTTTTTCTATTCACATTTAAGTTTTTGAACGAATTAAGAAAATTAGAGCGCACAGCATCTCATGTGCGCAGCTTATACTTTGTAATAAGACTGAAAAAAAATGTCCGAGTCTTATGAACATTTCAAATCTAGTATGTCAGCTGAAACATTAAGAACGCGTCCTGGCCTTCTAAAAATATATTTTCACATGCCTCGAAATATTTCAGAAATCACATACGTGCGAACTCTCTAATCTTCTGAAAGTGCAACAAAATCCAAAGAGCAGGAAAAGGGGTTCAAAATGTTTTGAAATTCTTGGGAACACAGCCATGCACTATTAAAGATGCATCAAAAAAGCAGAAGACATAACATTTTGGGTAGACGGAGGCGGAGAAAAAACTGAAATTCTGAGAACGGGGCATCCTCCAAACAAGGAAGCAATGAGACAACAGGGAACAAAAAAAAAATTTTTACCTAAAATTGATCAAAAAAGATCGTTCTTACTTTTCACTTTTGACGTCTTTAGAACCATTTTGAAATATGAAGATTTGGAATACGTAAAAGCGTACTTTGTGCCTAGTAGAGAAGATAGAGGTGGACTTGGAGCTTCGGT</canonical>
            <polymorphic>AGTAATAAAGATATGGATCCGGCGTGAGTAGTCATCGCAGGATATCAAAAGATTGCTCTGGACAAATACGTGGCGCAAAGAACAAGACAATTTTTTCAGTTTACGTGCAAAAGAAAGGGACAAAAACCTTTCGTGAATGGATGGGGTCAGTGGTGTGGGAAGAGCAAAAAAGAGACCAGCAAGAAAAAAAGGGTGGATACACTTCAAGTGTTGGGAAGAATGTCACTTAAAATGCAAAATTCTCCTTTTTGCCTCACTAATTTCAAATTCCATTTTCCCGAAAGGTTTCTTGGAATTAGTGTGACCTTAGACAAAATATTACTAGGGCATAACGACCATAATCCGATTTTTTTTGAGCACAAAAGAGTTGTAAGCTGTTCGTATCTATTGGAAGTTTATAGTTTTGTACTTTTTCTATTCACATTTAAGTTTTTGAACGAATTAAGAAAATTAGAGCGCACAGCATCTCATGTGCGCAGCTTATACTTTGTAATAAGACWGAAAAAAAATGTCCGAGTCTTATGAACATTTCAAATCTAGTATGTCAGCTGAAACATTAAGAACGCGTCCTGGCCTTCTAAAAATATATTTTCACATGCCTCGAAATATTTCAGAAATCACATACGTGCGAACTCTCTAATCTTCTGAAAGTGCAACAAAATCCAAAGAGCAGGAAAAGGGGTTCAAAATGTTTTGAAATTCTTGGGAACACAGCCATGCACTATTAAAGATGCATCAAAAAAGCAGAAGACATAACATTTTGGGTAGACGGAGGCGGAGAAAAAACTGAAATTCTGAGAACGGGGCATCCTCCAAACAAGGAAGCAATGAGACAACAGGGAACAAAAAAAAAATTTTTACCTAAAATTGATCAAAAAAGATCGTTCTTACTTTTCACTTTTGACGTCTTTAGAACCATTTTGAAATATGAAGATTTGGAATACGTAAAAGCGTACTTTGTGCCTAGTAGAGAAGATAGAGGTGGACTTGGAGCTTCGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATATTACTAGGGCATAACG</pcr_primer_p1>
		<pcr_primer_p2>AATGTTTCAGCTGACATACTAGATT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAAAATATTACTAGGGCATAACGACCATAATCCGATTTTTTTTGAGCACAAAAGAGTTGTAAGCTGTTCGTATCTATTGGAAGTTTATAGTTTTGTACTTTTTCTATTCACATTTAAGTTTTTGAACGAATTAAGAAAATTAGAGCGCACAGCATCTCATGTGCGCAGCTTATACTTTGTAATAAGACTGAAAAAAAATGTCCGAGTCTTATGAACATTTCAAATCTAGTATGTCAGCTGAAACATT</canonical_amplicon>
		<polymorphic_amplicon>CAAAATATTACTAGGGCATAACGACCATAATCCGATTTTTTTTGAGCACAAAAGAGTTGTAAGCTGTTCGTATCTATTGGAAGTTTATAGTTTTGTACTTTTTCTATTCACATTTAAGTTTTTGAACGAATTAAGAAAATTAGAGCGCACAGCATCTCATGTGCGCAGCTTATACTTTGTAATAAGACWGAAAAAAAATGTCCGAGTCTTATGAACATTTCAAATCTAGTATGTCAGCTGAAACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1755</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>583759</contig_pos>
        <strand>+</strand>
        <context>ATGTGCGCAK[C/T]TTATACTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTGAACGAATTAAGAAAATTAGAGCGCACAGCATCTCATGTGCGCAG</left_flank>
        <right_flank>TTATACTTTGTAATAAGACTGAAAAAAAATGTCCGAGTCTTATGAACATT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAATTGGCAGAAGAGGATAGTAATAAAGATATGGATCCGGCGTGAGTAGTCATCGCAGGATATCAAAAGATTGCTCTGGACAAATACGTGGCGCAAAGAACAAGACAATTTTTTCAGTTTACGTGCAAAAGAAAGGGACAAAAACCTTTCGTGAATGGATGGGGTCAGTGGTGTGGGAAGAGCAAAAAAGAGACCAGCAAGAAAAAAAGGGTGGATACACTTCAAGTGTTGGGAAGAATGTCACTTAAAATGCAAAATTCTCCTTTTTGCCTCACTAATTTCAAATTCCATTTTCCCGAAAGGTTTCTTGGAATTAGTGTGACCTTAGACAAAATATTACTAGGGCATAACGACCATAATCCGATTTTTTTTGAGCACAAAAGAGTTGTAAGCTGTTCGTATCTATTGGAAGTTTATAGTTTTGTACTTTTTCTATTCACATTTAAGTTTTTGAACGAATTAAGAAAATTAGAGCGCACAGCATCTCATGTGCGCAGCTTATACTTTGTAATAAGACTGAAAAAAAATGTCCGAGTCTTATGAACATTTCAAATCTAGTATGTCAGCTGAAACATTAAGAACGCGTCCTGGCCTTCTAAAAATATATTTTCACATGCCTCGAAATATTTCAGAAATCACATACGTGCGAACTCTCTAATCTTCTGAAAGTGCAACAAAATCCAAAGAGCAGGAAAAGGGGTTCAAAATGTTTTGAAATTCTTGGGAACACAGCCATGCACTATTAAAGATGCATCAAAAAAGCAGAAGACATAACATTTTGGGTAGACGGAGGCGGAGAAAAAACTGAAATTCTGAGAACGGGGCATCCTCCAAACAAGGAAGCAATGAGACAACAGGGAACAAAAAAAAAATTTTTACCTAAAATTGATCAAAAAAGATCGTTCTTACTTTTCACTTTTGACGTCTTTAGAACCATTTTGAAATATGAAGATTTGGAATACGTAAAAGCGTACTTTGTGCCTAGTAGAGAAGATAGA</canonical>
            <polymorphic>GAAAATTGGCAGAAGAGGATAGTAATAAAGATATGGATCCGGCGTGAGTAGTCATCGCAGGATATCAAAAGATTGCTCTGGACAAATACGTGGCGCAAAGAACAAGACAATTTTTTCAGTTTACGTGCAAAAGAAAGGGACAAAAACCTTTCGTGAATGGATGGGGTCAGTGGTGTGGGAAGAGCAAAAAAGAGACCAGCAAGAAAAAAAGGGTGGATACACTTCAAGTGTTGGGAAGAATGTCACTTAAAATGCAAAATTCTCCTTTTTGCCTCACTAATTTCAAATTCCATTTTCCCGAAAGGTTTCTTGGAATTAGTGTGACCTTAGACAAAATATTACTAGGGCATAACGACCATAATCCGATTTTTTTTGAGCACAAAAGAGTTGTAAGCTGTTCGTATCTATTGGAAGTTTATAGTTTTGTACTTTTTCTATTCACATTTAAGTTTTTGAACGAATTAAGAAAATTAGAGCGCACAGCATCTCATGTGCGCAGYTTATACTTTGTAATAAGACTGAAAAAAAATGTCCGAGTCTTATGAACATTTCAAATCTAGTATGTCAGCTGAAACATTAAGAACGCGTCCTGGCCTTCTAAAAATATATTTTCACATGCCTCGAAATATTTCAGAAATCACATACGTGCGAACTCTCTAATCTTCTGAAAGTGCAACAAAATCCAAAGAGCAGGAAAAGGGGTTCAAAATGTTTTGAAATTCTTGGGAACACAGCCATGCACTATTAAAGATGCATCAAAAAAGCAGAAGACATAACATTTTGGGTAGACGGAGGCGGAGAAAAAACTGAAATTCTGAGAACGGGGCATCCTCCAAACAAGGAAGCAATGAGACAACAGGGAACAAAAAAAAAATTTTTACCTAAAATTGATCAAAAAAGATCGTTCTTACTTTTCACTTTTGACGTCTTTAGAACCATTTTGAAATATGAAGATTTGGAATACGTAAAAGCGTACTTTGTGCCTAGTAGAGAAGATAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>432 394 105 69</canonical_bands>
                <polymorphic_bands>432 394 174</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>394 266 141 105 69 25</canonical_bands>
                <polymorphic_bands>394 266 174 141 25</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAATATTACTAGGGCATAACG</pcr_primer_p1>
		<pcr_primer_p2>TCAGCTGACATACTAGATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CAAAATATTACTAGGGCATAACGACCATAATCCGATTTTTTTTGAGCACAAAAGAGTTGTAAGCTGTTCGTATCTATTGGAAGTTTATAGTTTTGTACTTTTTCTATTCACATTTAAGTTTTTGAACGAATTAAGAAAATTAGAGCGCACAGCATCTCATGTGCGCAGCTTATACTTTGTAATAAGACTGAAAAAAAATGTCCGAGTCTTATGAACATTTCAAATCTAGTATGTCAGCTGA</canonical_amplicon>
		<polymorphic_amplicon>CAAAATATTACTAGGGCATAACGACCATAATCCGATTTTTTTTGAGCACAAAAGAGTTGTAAGCTGTTCGTATCTATTGGAAGTTTATAGTTTTGTACTTTTTCTATTCACATTTAAGTTTTTGAACGAATTAAGAAAATTAGAGCGCACAGCATCTCATGTGCGCAGYTTATACTTTGTAATAAGACTGAAAAAAAATGTCCGAGTCTTATGAACATTTCAAATCTAGTATGTCAGCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1756</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>583758</contig_pos>
        <strand>+</strand>
        <context>CATGTGCGCA[G/T]YTTATACTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTTTTGAACGAATTAAGAAAATTAGAGCGCACAGCATCTCATGTGCGCA</left_flank>
        <right_flank>CTTATACTTTGTAATAAGACTGAAAAAAAATGTCCGAGTCTTATGAACAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAAATTGGCAGAAGAGGATAGTAATAAAGATATGGATCCGGCGTGAGTAGTCATCGCAGGATATCAAAAGATTGCTCTGGACAAATACGTGGCGCAAAGAACAAGACAATTTTTTCAGTTTACGTGCAAAAGAAAGGGACAAAAACCTTTCGTGAATGGATGGGGTCAGTGGTGTGGGAAGAGCAAAAAAGAGACCAGCAAGAAAAAAAGGGTGGATACACTTCAAGTGTTGGGAAGAATGTCACTTAAAATGCAAAATTCTCCTTTTTGCCTCACTAATTTCAAATTCCATTTTCCCGAAAGGTTTCTTGGAATTAGTGTGACCTTAGACAAAATATTACTAGGGCATAACGACCATAATCCGATTTTTTTTGAGCACAAAAGAGTTGTAAGCTGTTCGTATCTATTGGAAGTTTATAGTTTTGTACTTTTTCTATTCACATTTAAGTTTTTGAACGAATTAAGAAAATTAGAGCGCACAGCATCTCATGTGCGCAGCTTATACTTTGTAATAAGACTGAAAAAAAATGTCCGAGTCTTATGAACATTTCAAATCTAGTATGTCAGCTGAAACATTAAGAACGCGTCCTGGCCTTCTAAAAATATATTTTCACATGCCTCGAAATATTTCAGAAATCACATACGTGCGAACTCTCTAATCTTCTGAAAGTGCAACAAAATCCAAAGAGCAGGAAAAGGGGTTCAAAATGTTTTGAAATTCTTGGGAACACAGCCATGCACTATTAAAGATGCATCAAAAAAGCAGAAGACATAACATTTTGGGTAGACGGAGGCGGAGAAAAAACTGAAATTCTGAGAACGGGGCATCCTCCAAACAAGGAAGCAATGAGACAACAGGGAACAAAAAAAAAATTTTTACCTAAAATTGATCAAAAAAGATCGTTCTTACTTTTCACTTTTGACGTCTTTAGAACCATTTTGAAATATGAAGATTTGGAATACGTAAAAGCGTACTTTGTGCCTAGTAGAGAAGATAG</canonical>
            <polymorphic>AGAAAATTGGCAGAAGAGGATAGTAATAAAGATATGGATCCGGCGTGAGTAGTCATCGCAGGATATCAAAAGATTGCTCTGGACAAATACGTGGCGCAAAGAACAAGACAATTTTTTCAGTTTACGTGCAAAAGAAAGGGACAAAAACCTTTCGTGAATGGATGGGGTCAGTGGTGTGGGAAGAGCAAAAAAGAGACCAGCAAGAAAAAAAGGGTGGATACACTTCAAGTGTTGGGAAGAATGTCACTTAAAATGCAAAATTCTCCTTTTTGCCTCACTAATTTCAAATTCCATTTTCCCGAAAGGTTTCTTGGAATTAGTGTGACCTTAGACAAAATATTACTAGGGCATAACGACCATAATCCGATTTTTTTTGAGCACAAAAGAGTTGTAAGCTGTTCGTATCTATTGGAAGTTTATAGTTTTGTACTTTTTCTATTCACATTTAAGTTTTTGAACGAATTAAGAAAATTAGAGCGCACAGCATCTCATGTGCGCAKCTTATACTTTGTAATAAGACTGAAAAAAAATGTCCGAGTCTTATGAACATTTCAAATCTAGTATGTCAGCTGAAACATTAAGAACGCGTCCTGGCCTTCTAAAAATATATTTTCACATGCCTCGAAATATTTCAGAAATCACATACGTGCGAACTCTCTAATCTTCTGAAAGTGCAACAAAATCCAAAGAGCAGGAAAAGGGGTTCAAAATGTTTTGAAATTCTTGGGAACACAGCCATGCACTATTAAAGATGCATCAAAAAAGCAGAAGACATAACATTTTGGGTAGACGGAGGCGGAGAAAAAACTGAAATTCTGAGAACGGGGCATCCTCCAAACAAGGAAGCAATGAGACAACAGGGAACAAAAAAAAAATTTTTACCTAAAATTGATCAAAAAAGATCGTTCTTACTTTTCACTTTTGACGTCTTTAGAACCATTTTGAAATATGAAGATTTGGAATACGTAAAAGCGTACTTTGTGCCTAGTAGAGAAGATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>431 395 105 69</canonical_bands>
                <polymorphic_bands>431 395 174</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>395 265 141 105 69 25</canonical_bands>
                <polymorphic_bands>395 265 174 141 25</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAATATTACTAGGGCATAACG</pcr_primer_p1>
		<pcr_primer_p2>TCAGCTGACATACTAGATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CAAAATATTACTAGGGCATAACGACCATAATCCGATTTTTTTTGAGCACAAAAGAGTTGTAAGCTGTTCGTATCTATTGGAAGTTTATAGTTTTGTACTTTTTCTATTCACATTTAAGTTTTTGAACGAATTAAGAAAATTAGAGCGCACAGCATCTCATGTGCGCAGCTTATACTTTGTAATAAGACTGAAAAAAAATGTCCGAGTCTTATGAACATTTCAAATCTAGTATGTCAGCTGA</canonical_amplicon>
		<polymorphic_amplicon>CAAAATATTACTAGGGCATAACGACCATAATCCGATTTTTTTTGAGCACAAAAGAGTTGTAAGCTGTTCGTATCTATTGGAAGTTTATAGTTTTGTACTTTTTCTATTCACATTTAAGTTTTTGAACGAATTAAGAAAATTAGAGCGCACAGCATCTCATGTGCGCAKCTTATACTTTGTAATAAGACTGAAAAAAAATGTCCGAGTCTTATGAACATTTCAAATCTAGTATGTCAGCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1757</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>585798</contig_pos>
        <strand>+</strand>
        <context>TGCCGGCGAA[C/T]GATCTTCAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTGGCGCTGTACTGACTTCATCCGGTTTCAACAGATATATGCCGGCGAA</left_flank>
        <right_flank>GATCTTCAATTTTCTAGCAAGAGCGCTTCTTCTAGGCCACAATGAAGTCA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATCACTGCAGAAATTAATGGAAAAACTCAAAAATTCACACCTGTACAAATTTCTCAAAAACAGGTGTGTCAGTATTGGCTCGCAAGTTTTTTTGTTTATACTTCTATAATAGTCAAAGCTGGATAAATAATGAAATATCTGGAAAGCAGGATTGTATTTCTGGTAGCAGAAATCAGAAACACGATTTTATGTTCGTATTATGCCAAAAATGAAACAGTTTTCTACGAGGTTTTATGACTAAAAAAGTTTAAATCGGCGAAGAGAGAAAAATAATACTGTGAACATTTATGTATACTTTGTCATATGGTTTGGTTTAGTATTGCTACTGAACTGTGATAGAATTTCGATGAGGATTCCGATGGAGGTATTTCGGAGAGGACGAAAAAGGAAAGATCAAGAGAGAAAGAGAAAAAAGGAGAGATGGGTGACTAGACAACTATCGAAACAAGTGGCGCTGTACTGACTTCATCCGGTTTCAACAGATATATGCCGGCGAACGATCTTCAATTTTCTAGCAAGAGCGCTTCTTCTAGGCCACAATGAAGTCAGTTTATTAACAAGAGATAAAACGAAACAAATGTGATAGATCAAGTGTTCAACGTTCGCAGAAACAGGAATTGCGTGGGAAATGAAGAAGAAGGAGGAGGAGAACAGGACTAATTGAGATTCTTCTTGAACTGTTTAATCCACTTTGTAGGAAGATAGAAAATCAACAAAAATTGATGGATGGGCGTGGAATATAGATTTGACCTTTTTGTAGTGAAAAAGGATAGGGATAATGTAGGACAATCATTTTGTATTTTGAAATTGCAGGTTTTACGTGCCCGCCATGATCATCTACACGGTGTTGCTAATCACTCAAAGCAATTCAATCTATTTTATTTGAAGCACCTTTTGTTTCAATGAACGCATAGAAAAGGACATCTACAGTGCATGAATATATGAAAAACGCAATTTTCAGTTGATTTTCGCCATTGCAAGAGTCTAGAGCTCGGCTT</canonical>
            <polymorphic>ACATCACTGCAGAAATTAATGGAAAAACTCAAAAATTCACACCTGTACAAATTTCTCAAAAACAGGTGTGTCAGTATTGGCTCGCAAGTTTTTTTGTTTATACTTCTATAATAGTCAAAGCTGGATAAATAATGAAATATCTGGAAAGCAGGATTGTATTTCTGGTAGCAGAAATCAGAAACACGATTTTATGTTCGTATTATGCCAAAAATGAAACAGTTTTCTACGAGGTTTTATGACTAAAAAAGTTTAAATCGGCGAAGAGAGAAAAATAATACTGTGAACATTTATGTATACTTTGTCATATGGTTTGGTTTAGTATTGCTACTGAACTGTGATAGAATTTCGATGAGGATTCCGATGGAGGTATTTCGGAGAGGACGAAAAAGGAAAGATCAAGAGAGAAAGAGAAAAAAGGAGAGATGGGTGACTAGACAACTATCGAAACAAGTGGCGCTGTACTGACTTCATCCGGTTTCAACAGATATATGCCGGCGAAYGATCTTCAATTTTCTAGCAAGAGCGCTTCTTCTAGGCCACAATGAAGTCAGTTTATTAACAAGAGATAAAACGAAACAAATGTGATAGATCAAGTGTTCAACGTTCGCAGAAACAGGAATTGCGTGGGAAATGAAGAAGAAGGAGGAGGAGAACAGGACTAATTGAGATTCTTCTTGAACTGTTTAATCCACTTTGTAGGAAGATAGAAAATCAACAAAAATTGATGGATGGGCGTGGAATATAGATTTGACCTTTTTGTAGTGAAAAAGGATAGGGATAATGTAGGACAATCATTTTGTATTTTGAAATTGCAGGTTTTACGTGCCCGCCATGATCATCTACACGGTGTTGCTAATCACTCAAAGCAATTCAATCTATTTTATTTGAAGCACCTTTTGTTTCAATGAACGCATAGAAAAGGACATCTACAGTGCATGAATATATGAAAAACGCAATTTTCAGTTGATTTTCGCCATTGCAAGAGTCTAGAGCTCGGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGATAGAATTTCGATGAGGAT</pcr_primer_p1>
		<pcr_primer_p2>CACATTTGTTTCGTTTTATCTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGATAGAATTTCGATGAGGATTCCGATGGAGGTATTTCGGAGAGGACGAAAAAGGAAAGATCAAGAGAGAAAGAGAAAAAAGGAGAGATGGGTGACTAGACAACTATCGAAACAAGTGGCGCTGTACTGACTTCATCCGGTTTCAACAGATATATGCCGGCGAACGATCTTCAATTTTCTAGCAAGAGCGCTTCTTCTAGGCCACAATGAAGTCAGTTTATTAACAAGAGATAAAACGAAACAAATGTG</canonical_amplicon>
		<polymorphic_amplicon>GTGATAGAATTTCGATGAGGATTCCGATGGAGGTATTTCGGAGAGGACGAAAAAGGAAAGATCAAGAGAGAAAGAGAAAAAAGGAGAGATGGGTGACTAGACAACTATCGAAACAAGTGGCGCTGTACTGACTTCATCCGGTTTCAACAGATATATGCCGGCGAAYGATCTTCAATTTTCTAGCAAGAGCGCTTCTTCTAGGCCACAATGAAGTCAGTTTATTAACAAGAGATAAAACGAAACAAATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1758</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>585495</contig_pos>
        <strand>+</strand>
        <context>TTTTATGTTC[C/G]TATTATGCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGCAGGATTGTATTTCTGGTAGCAGAAATCAGAAACACGATTTTATGTTC</left_flank>
        <right_flank>TATTATGCCAAAAATGAAACAGTTTTCTACGAGGTTTTATGACTAAAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCACAGCAAAAATTTGAAGAAAAAAAAACAGAACAAACCTTCTGGCCGCTTTGGCGGTGGTCCCGTTGTTCCTTTCGATGATTTTCTCTGTTTCTTTCCTTTATCGTCTGAACCCGATGAGTTTGAGTTTGAAGCTTCCGCTGAAAATAGATAGAGGATAGAAGTGGTGTGAGTTGAAAGTTAGAGCAGCTGAGAATAATACAGGTGATAAATGTTTTGGTCTTGTTGATGAAAATACACAGAAATCAATTCTGGAGTACAGGTGGCAAATGACACATTTCTGATTAGTATAAAGTAAAAAACATCACTGCAGAAATTAATGGAAAAACTCAAAAATTCACACCTGTACAAATTTCTCAAAAACAGGTGTGTCAGTATTGGCTCGCAAGTTTTTTTGTTTATACTTCTATAATAGTCAAAGCTGGATAAATAATGAAATATCTGGAAAGCAGGATTGTATTTCTGGTAGCAGAAATCAGAAACACGATTTTATGTTCGTATTATGCCAAAAATGAAACAGTTTTCTACGAGGTTTTATGACTAAAAAAGTTTAAATCGGCGAAGAGAGAAAAATAATACTGTGAACATTTATGTATACTTTGTCATATGGTTTGGTTTAGTATTGCTACTGAACTGTGATAGAATTTCGATGAGGATTCCGATGGAGGTATTTCGGAGAGGACGAAAAAGGAAAGATCAAGAGAGAAAGAGAAAAAAGGAGAGATGGGTGACTAGACAACTATCGAAACAAGTGGCGCTGTACTGACTTCATCCGGTTTCAACAGATATATGCCGGCGAACGATCTTCAATTTTCTAGCAAGAGCGCTTCTTCTAGGCCACAATGAAGTCAGTTTATTAACAAGAGATAAAACGAAACAAATGTGATAGATCAAGTGTTCAACGTTCGCAGAAACAGGAATTGCGTGGGAAATGAAGAAGAAGGAGGAGGAGAACAGGACTAATTGAGATTCTTCTTGAACTGTTTAATCCACTTTGT</canonical>
            <polymorphic>GATCACAGCAAAAATTTGAAGAAAAAAAAACAGAACAAACCTTCTGGCCGCTTTGGCGGTGGTCCCGTTGTTCCTTTCGATGATTTTCTCTGTTTCTTTCCTTTATCGTCTGAACCCGATGAGTTTGAGTTTGAAGCTTCCGCTGAAAATAGATAGAGGATAGAAGTGGTGTGAGTTGAAAGTTAGAGCAGCTGAGAATAATACAGGTGATAAATGTTTTGGTCTTGTTGATGAAAATACACAGAAATCAATTCTGGAGTACAGGTGGCAAATGACACATTTCTGATTAGTATAAAGTAAAAAACATCACTGCAGAAATTAATGGAAAAACTCAAAAATTCACACCTGTACAAATTTCTCAAAAACAGGTGTGTCAGTATTGGCTCGCAAGTTTTTTTGTTTATACTTCTATAATAGTCAAAGCTGGATAAATAATGAAATATCTGGAAAGCAGGATTGTATTTCTGGTAGCAGAAATCAGAAACACGATTTTATGTTCSTATTATGCCAAAAATGAAACAGTTTTCTACGAGGTTTTATGACTAAAAAAGTTTAAATCGGCGAAGAGAGAAAAATAATACTGTGAACATTTATGTATACTTTGTCATATGGTTTGGTTTAGTATTGCTACTGAACTGTGATAGAATTTCGATGAGGATTCCGATGGAGGTATTTCGGAGAGGACGAAAAAGGAAAGATCAAGAGAGAAAGAGAAAAAAGGAGAGATGGGTGACTAGACAACTATCGAAACAAGTGGCGCTGTACTGACTTCATCCGGTTTCAACAGATATATGCCGGCGAACGATCTTCAATTTTCTAGCAAGAGCGCTTCTTCTAGGCCACAATGAAGTCAGTTTATTAACAAGAGATAAAACGAAACAAATGTGATAGATCAAGTGTTCAACGTTCGCAGAAACAGGAATTGCGTGGGAAATGAAGAAGAAGGAGGAGGAGAACAGGACTAATTGAGATTCTTCTTGAACTGTTTAATCCACTTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAAAGCTGGATAAATAATGAA</pcr_primer_p1>
		<pcr_primer_p2>ATCGAAATTCTATCACAGTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GTCAAAGCTGGATAAATAATGAAATATCTGGAAAGCAGGATTGTATTTCTGGTAGCAGAAATCAGAAACACGATTTTATGTTCGTATTATGCCAAAAATGAAACAGTTTTCTACGAGGTTTTATGACTAAAAAAGTTTAAATCGGCGAAGAGAGAAAAATAATACTGTGAACATTTATGTATACTTTGTCATATGGTTTGGTTTAGTATTGCTACTGAACTGTGATAGAATTTCGAT</canonical_amplicon>
		<polymorphic_amplicon>GTCAAAGCTGGATAAATAATGAAATATCTGGAAAGCAGGATTGTATTTCTGGTAGCAGAAATCAGAAACACGATTTTATGTTCSTATTATGCCAAAAATGAAACAGTTTTCTACGAGGTTTTATGACTAAAAAAGTTTAAATCGGCGAAGAGAGAAAAATAATACTGTGAACATTTATGTATACTTTGTCATATGGTTTGGTTTAGTATTGCTACTGAACTGTGATAGAATTTCGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1759</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>590398</contig_pos>
        <strand>+</strand>
        <context>CTTCATGCAT[A/G]TAGCAGAATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAAAAGTCTTCGACGATAAGAAAATCGCTTCAAGCTACACTTCATGCAT</left_flank>
        <right_flank>TAGCAGAATATGGGTCACAAAGAGAACAGTTTTAGAGCAGGGGTTTAAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGGCAAACTAGGAAGGGTAGCCTTATCAATAAAACATGCAAAAACGTTTTTAGGGTACAGACTAATAGAGTTCCAAAAAGTATTTCGTGATTTGTGATTAGAAAAATATTAGAACAAGAGACTGTTTGCCAATTTGATATTAAAAACTAATCGAATAACAAGAAAAGAACCATAAAAACGTAAAATAACGTCAGGGATGGGAAATAGAATAATAGAGTCGGTGTACAAAAACATTAAGACCATCGGTACACAACTTGTTTGATAGTGGAGTAATTCCAAAGATCGGTATTCAGAACGAAATCGGAAAAACAGTGAAAACTAGCCTTAAAATCATTGATTTGGACAAAAAAGTCGCAACATTTTTTCCAACTACTTATCGTGAATTCGAAACGACAACGTGTAGGAACTGATAAAAATAATCGGTCAATTGATCCGGAAGAGTCCAGGGACAAAAGTCTTCGACGATAAGAAAATCGCTTCAAGCTACACTTCATGCATGTAGCAGAATATGGGTCACAAAGAGAACAGTTTTAGAGCAGGGGTTTAAAATGTATAACAAATTAAATAATGACATTTTAAATGAATGGGAAAGGGGAAACCTATAAAATACAATGTCATACCTACAAACAATTTTTAGGTTCTGTTTTTTATTGAAAACGTTTCAGTTTGAATTCCCTATCTAGTCCAAAAGAGGATTAATCTCTCGGCGCGTTCTTGCAGATTTTATAGAATAATGTGAACTCAAATTGATCAAGCACCAACGTAACGGCTAATCTGCTGAAGCTAATCTAGTTTGGCTCGTTTAGACAAAAATATATATCTAAGATTTGTATATAAACGGACAACCTGTTCAAAATATTTAGAATGAATGTTAATGAGAAACACAAAAAACTAATTGTTCTAGTTGAGAATCAAGGGATTAATGATCTTCCCGCATAATCGCTACAGGTTTCGGCATTGTCTGTCTAGTTTGATCGGTGGATCCGCTCTCATTATAAC</canonical>
            <polymorphic>AAGGCAAACTAGGAAGGGTAGCCTTATCAATAAAACATGCAAAAACGTTTTTAGGGTACAGACTAATAGAGTTCCAAAAAGTATTTCGTGATTTGTGATTAGAAAAATATTAGAACAAGAGACTGTTTGCCAATTTGATATTAAAAACTAATCGAATAACAAGAAAAGAACCATAAAAACGTAAAATAACGTCAGGGATGGGAAATAGAATAATAGAGTCGGTGTACAAAAACATTAAGACCATCGGTACACAACTTGTTTGATAGTGGAGTAATTCCAAAGATCGGTATTCAGAACGAAATCGGAAAAACAGTGAAAACTAGCCTTAAAATCATTGATTTGGACAAAAAAGTCGCAACATTTTTTCCAACTACTTATCGTGAATTCGAAACGACAACGTGTAGGAACTGATAAAAATAATCGGTCAATTGATCCGGAAGAGTCCAGGGACAAAAGTCTTCGACGATAAGAAAATCGCTTCAAGCTACACTTCATGCATRTAGCAGAATATGGGTCACAAAGAGAACAGTTTTAGAGCAGGGGTTTAAAATGTATAACAAATTAAATAATGACATTTTAAATGAATGGGAAAGGGGAAACCTATAAAATACAATGTCATACCTACAAACAATTTTTAGGTTCTGTTTTTTATTGAAAACGTTTCAGTTTGAATTCCCTATCTAGTCCAAAAGAGGATTAATCTCTCGGCGCGTTCTTGCAGATTTTATAGAATAATGTGAACTCAAATTGATCAAGCACCAACGTAACGGCTAATCTGCTGAAGCTAATCTAGTTTGGCTCGTTTAGACAAAAATATATATCTAAGATTTGTATATAAACGGACAACCTGTTCAAAATATTTAGAATGAATGTTAATGAGAAACACAAAAAACTAATTGTTCTAGTTGAGAATCAAGGGATTAATGATCTTCCCGCATAATCGCTACAGGTTTCGGCATTGTCTGTCTAGTTTGATCGGTGGATCCGCTCTCATTATAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>500 461 39</canonical_bands>
                <polymorphic_bands>961 39</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 457 36 4</canonical_bands>
                <polymorphic_bands>507 457 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCCAACTACTTATCGTGAA</pcr_primer_p1>
		<pcr_primer_p2>GTATTTTATAGGTTTCCCCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCCAACTACTTATCGTGAATTCGAAACGACAACGTGTAGGAACTGATAAAAATAATCGGTCAATTGATCCGGAAGAGTCCAGGGACAAAAGTCTTCGACGATAAGAAAATCGCTTCAAGCTACACTTCATGCATGTAGCAGAATATGGGTCACAAAGAGAACAGTTTTAGAGCAGGGGTTTAAAATGTATAACAAATTAAATAATGACATTTTAAATGAATGGGAAAGGGGAAACCTATAAAATAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCCAACTACTTATCGTGAATTCGAAACGACAACGTGTAGGAACTGATAAAAATAATCGGTCAATTGATCCGGAAGAGTCCAGGGACAAAAGTCTTCGACGATAAGAAAATCGCTTCAAGCTACACTTCATGCATRTAGCAGAATATGGGTCACAAAGAGAACAGTTTTAGAGCAGGGGTTTAAAATGTATAACAAATTAAATAATGACATTTTAAATGAATGGGAAAGGGGAAACCTATAAAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1760</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>590770</contig_pos>
        <strand>+</strand>
        <context>TAGAATGAAT[A/G]TTAATGAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAAGATTTGTATATAAACGGACAACCTGTTCAAAATATTTAGAATGAAT</left_flank>
        <right_flank>TTAATGAGAAACACAAAAAACTAATTGTTCTAGTTGAGAATCAAGGGATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTATCGTGAATTCGAAACGACAACGTGTAGGAACTGATAAAAATAATCGGTCAATTGATCCGGAAGAGTCCAGGGACAAAAGTCTTCGACGATAAGAAAATCGCTTCAAGCTACACTTCATGCATGTAGCAGAATATGGGTCACAAAGAGAACAGTTTTAGAGCAGGGGTTTAAAATGTATAACAAATTAAATAATGACATTTTAAATGAATGGGAAAGGGGAAACCTATAAAATACAATGTCATACCTACAAACAATTTTTAGGTTCTGTTTTTTATTGAAAACGTTTCAGTTTGAATTCCCTATCTAGTCCAAAAGAGGATTAATCTCTCGGCGCGTTCTTGCAGATTTTATAGAATAATGTGAACTCAAATTGATCAAGCACCAACGTAACGGCTAATCTGCTGAAGCTAATCTAGTTTGGCTCGTTTAGACAAAAATATATATCTAAGATTTGTATATAAACGGACAACCTGTTCAAAATATTTAGAATGAATGTTAATGAGAAACACAAAAAACTAATTGTTCTAGTTGAGAATCAAGGGATTAATGATCTTCCCGCATAATCGCTACAGGTTTCGGCATTGTCTGTCTAGTTTGATCGGTGGATCCGCTCTCATTATAACCAATCCGTTTAGGATTTGGATGATACGTACAAAAGGAAGTTTGAGTGACGGGACACAAATGGAGGAATGGGTGGTGACGCTAGTTTGTGCCTCCAGAATATCAATTTGATATCGTATCCTTATCAAATTTTTTTCTTTCAGTGTCTCTCACTCTCTTCTTCCATTTTCGCAACATTTTGACTAGACTGTGGTTCTGGAAGAAAGATGGAGAGTGTAGAGAGCGGGGTGCTGATCATACTGACGTATTGAGTTACGGAGAGGCGTCTTTCAGAAAATAATAACCGAGAGCTGCTCTCAGAGTGTCAATATTAGTTTAACATTTCGTCTTTGTGTCGCAAAAAATCTGACTCCTAGACTATTCGACCGTTGGCC</canonical>
            <polymorphic>ACTTATCGTGAATTCGAAACGACAACGTGTAGGAACTGATAAAAATAATCGGTCAATTGATCCGGAAGAGTCCAGGGACAAAAGTCTTCGACGATAAGAAAATCGCTTCAAGCTACACTTCATGCATGTAGCAGAATATGGGTCACAAAGAGAACAGTTTTAGAGCAGGGGTTTAAAATGTATAACAAATTAAATAATGACATTTTAAATGAATGGGAAAGGGGAAACCTATAAAATACAATGTCATACCTACAAACAATTTTTAGGTTCTGTTTTTTATTGAAAACGTTTCAGTTTGAATTCCCTATCTAGTCCAAAAGAGGATTAATCTCTCGGCGCGTTCTTGCAGATTTTATAGAATAATGTGAACTCAAATTGATCAAGCACCAACGTAACGGCTAATCTGCTGAAGCTAATCTAGTTTGGCTCGTTTAGACAAAAATATATATCTAAGATTTGTATATAAACGGACAACCTGTTCAAAATATTTAGAATGAATRTTAATGAGAAACACAAAAAACTAATTGTTCTAGTTGAGAATCAAGGGATTAATGATCTTCCCGCATAATCGCTACAGGTTTCGGCATTGTCTGTCTAGTTTGATCGGTGGATCCGCTCTCATTATAACCAATCCGTTTAGGATTTGGATGATACGTACAAAAGGAAGTTTGAGTGACGGGACACAAATGGAGGAATGGGTGGTGACGCTAGTTTGTGCCTCCAGAATATCAATTTGATATCGTATCCTTATCAAATTTTTTTCTTTCAGTGTCTCTCACTCTCTTCTTCCATTTTCGCAACATTTTGACTAGACTGTGGTTCTGGAAGAAAGATGGAGAGTGTAGAGAGCGGGGTGCTGATCATACTGACGTATTGAGTTACGGAGAGGCGTCTTTCAGAAAATAATAACCGAGAGCTGCTCTCAGAGTGTCAATATTAGTTTAACATTTCGTCTTTGTGTCGCAAAAAATCTGACTCCTAGACTATTCGACCGTTGGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATCTAGTTTGGCTCGTTTAGA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGTACGTATCATCCAAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAATCTAGTTTGGCTCGTTTAGACAAAAATATATATCTAAGATTTGTATATAAACGGACAACCTGTTCAAAATATTTAGAATGAATGTTAATGAGAAACACAAAAAACTAATTGTTCTAGTTGAGAATCAAGGGATTAATGATCTTCCCGCATAATCGCTACAGGTTTCGGCATTGTCTGTCTAGTTTGATCGGTGGATCCGCTCTCATTATAACCAATCCGTTTAGGATTTGGATGATACGTACAAAAG</canonical_amplicon>
		<polymorphic_amplicon>TAATCTAGTTTGGCTCGTTTAGACAAAAATATATATCTAAGATTTGTATATAAACGGACAACCTGTTCAAAATATTTAGAATGAATRTTAATGAGAAACACAAAAAACTAATTGTTCTAGTTGAGAATCAAGGGATTAATGATCTTCCCGCATAATCGCTACAGGTTTCGGCATTGTCTGTCTAGTTTGATCGGTGGATCCGCTCTCATTATAACCAATCCGTTTAGGATTTGGATGATACGTACAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1761</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>675672</contig_pos>
        <strand>+</strand>
        <context>TTATAATTGG[A/G]TATGAGCCCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATTGTTTACTGGAAGTAATTAGAATGAATGAAGTTTAATTATAATTGG</left_flank>
        <right_flank>TATGAGCCCCATAATTTTTTTTTTCAGATAATATCAGGAGAATTTTTACA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATAACAATAACTAGTCTTTTTTTTCTTATTTTACTTGCATTGTTCTGGGAAACTTTTTCAATGAGCTCCAAATGATGTCATATACTGTCAGAATAATTAAATTCAAACGGGTGAGATTTGTAATTTGAAATTACAAATTTCATATCAAGATTGATGAAAATGTCTGAAAATTTATTGAAAACGTTACATCATAGGGTGCTCTTTGGAAAACTGAAGCTTCGAATTTTCCGAACTACCTCCTTACGTTTTTTTACTAGTATGACGTCAACGGAAAAATAAACGCTAAAAGAAAAAGAACTCGAGGAAGGAAGACTACTGCTCGTAAGAGGGATACCCAATGACATCTGGAAGGACATGAAGCATGAAAATATTCTGTTCATCTGACGGAAATAGAACAGGACAGAGAACAACAAAAGTTCTAGAAGAGTTTTTTTCATCTCTCACTGTAATTGTTTACTGGAAGTAATTAGAATGAATGAAGTTTAATTATAATTGGATATGAGCCCCATAATTTTTTTTTTCAGATAATATCAGGAGAATTTTTACATAGAATGGCCAGGAAAAATTGTCGCCTTTGTGTGAAGATGTATTCTACCGGAACAAATTGATATGATTGACGGAAAAGATTGGAAGAAAAGGCAATATGAGGTTTTGAACAAAGGATGGAAAGTGAAAAGTCGAAATGTTTATGTTTGGTGATTTGAAAAGGAAAGGTGAGGAGAGATTCTTCGAGAAAAAGGACAGGAAGGCGTGAATCGGGACATCTGACAGGGAAGCGACAAACTTCCGATGTGCATTATCATCGGAAGCGGGTGGAGGGTGGACGATGATGAATCAGTCAGGCTTCTATTATGAATTTTTACTTTTTGGTGACAATTGAAAAAGGTTGTGTGGGACGGGAGGGACGCTGTAAAACATATTCAAAAAAAAATACTGTTTGCTCTGGACACACTTCCGCTTCCTTTGAGTATTCATTTTCCAATTCTTGTTGCAACAT</canonical>
            <polymorphic>AATATAACAATAACTAGTCTTTTTTTTCTTATTTTACTTGCATTGTTCTGGGAAACTTTTTCAATGAGCTCCAAATGATGTCATATACTGTCAGAATAATTAAATTCAAACGGGTGAGATTTGTAATTTGAAATTACAAATTTCATATCAAGATTGATGAAAATGTCTGAAAATTTATTGAAAACGTTACATCATAGGGTGCTCTTTGGAAAACTGAAGCTTCGAATTTTCCGAACTACCTCCTTACGTTTTTTTACTAGTATGACGTCAACGGAAAAATAAACGCTAAAAGAAAAAGAACTCGAGGAAGGAAGACTACTGCTCGTAAGAGGGATACCCAATGACATCTGGAAGGACATGAAGCATGAAAATATTCTGTTCATCTGACGGAAATAGAACAGGACAGAGAACAACAAAAGTTCTAGAAGAGTTTTTTTCATCTCTCACTGTAATTGTTTACTGGAAGTAATTAGAATGAATGAAGTTTAATTATAATTGGRTATGAGCCCCATAATTTTTTTTTTCAGATAATATCAGGAGAATTTTTACATAGAATGGCCAGGAAAAATTGTCGCCTTTGTGTGAAGATGTATTCTACCGGAACAAATTGATATGATTGACGGAAAAGATTGGAAGAAAAGGCAATATGAGGTTTTGAACAAAGGATGGAAAGTGAAAAGTCGAAATGTTTATGTTTGGTGATTTGAAAAGGAAAGGTGAGGAGAGATTCTTCGAGAAAAAGGACAGGAAGGCGTGAATCGGGACATCTGACAGGGAAGCGACAAACTTCCGATGTGCATTATCATCGGAAGCGGGTGGAGGGTGGACGATGATGAATCAGTCAGGCTTCTATTATGAATTTTTACTTTTTGGTGACAATTGAAAAAGGTTGTGTGGGACGGGAGGGACGCTGTAAAACATATTCAAAAAAAAATACTGTTTGCTCTGGACACACTTCCGCTTCCTTTGAGTATTCATTTTCCAATTCTTGTTGCAACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCACTGTAATTGTTTACTGGAAGT</pcr_primer_p1>
		<pcr_primer_p2>TAAACATTTCGACTTTTCACTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCACTGTAATTGTTTACTGGAAGTAATTAGAATGAATGAAGTTTAATTATAATTGGATATGAGCCCCATAATTTTTTTTTTCAGATAATATCAGGAGAATTTTTACATAGAATGGCCAGGAAAAATTGTCGCCTTTGTGTGAAGATGTATTCTACCGGAACAAATTGATATGATTGACGGAAAAGATTGGAAGAAAAGGCAATATGAGGTTTTGAACAAAGGATGGAAAGTGAAAAGTCGAAATGTTTA</canonical_amplicon>
		<polymorphic_amplicon>TCACTGTAATTGTTTACTGGAAGTAATTAGAATGAATGAAGTTTAATTATAATTGGRTATGAGCCCCATAATTTTTTTTTTCAGATAATATCAGGAGAATTTTTACATAGAATGGCCAGGAAAAATTGTCGCCTTTGTGTGAAGATGTATTCTACCGGAACAAATTGATATGATTGACGGAAAAGATTGGAAGAAAAGGCAATATGAGGTTTTGAACAAAGGATGGAAAGTGAAAAGTCGAAATGTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1762</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>682946</contig_pos>
        <strand>+</strand>
        <context>AATTGAATAT[A/C]GAATTTCTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAACCGTATTTCTTTAAAAGTTGGTTTTTTGGTTATGACAATTGAATAT</left_flank>
        <right_flank>GAATTTCTAAGATTTTATCATTTGGAAAGTTCGACAGATCGGTGAAATTC</right_flank>
        <qual_score>146</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACATTTGGAGATCAGAGCTATGTACGAGACCATTCTTGGATGCAGTGACTACTTTGAAAAATGGAACTGTGCTGGCATTCAGAGGTAAATGTCAAATAAGCTAAATTTGTATTATTTTTATTTTGTAACTATCAAATGTTTTATTGCAGGAAACATGTTCTTCGAGTTTAAAACGAATCGAAACCAGTTTAACCCCAAAAGAATCATCAAATTTTTCCCATTTGATGGACCACTAGAAGCTGTTACCACTGATCGACATGGAAATGTGTATTTCTTCAAGGTATTTACAATTTCATACTTACCTGCTAAAAATTATGATACAGAAAGACATATACTGGGTAATGACCAAATACGGTGATATGATGACAGGTTACCCGAAGAAAATATCAGCAGGATTGACCGATACTCCAGATGGTATAAGTGCTGCGTTGTATTATCATCACGATGGGAAACCGTATTTCTTTAAAAGTTGGTTTTTTGGTTATGACAATTGAATATCGAATTTCTAAGATTTTATCATTTGGAAAGTTCGACAGATCGGTGAAATTCATGATCGATCATCATTAGTACCGAGCAGTGCCGCATGTCTCGTTTTGACTTTTTCAGTAGGATCAGTAGGATGCATGGTCAAATTTAGAGTTTGGAAAATCTGAATTCTTCCAATGCTTTGAAAAGTTGGGATTACACAATACATTAATAAATGTATTAATTTATTGTAGTTGACAACTTTTTGTAAAATTTTCTATCTGATGATATATCGGCCCTTTTGTATCTGAAAATGTAACAACAACTCCAAGATGAGCACTGAAATGTTTACGGTTTGAGTGGGTTTTTATTAGAGGATATGCGGTATCTTGCTTTGTTGGGTTTCTACGGAACAGTTTCGTTCAGTTTACTCTGAAATTCTTCAAAAATTGAAAAATGACTGCTTTTTTCAAGACTTAAAGATTTTGACAGGAAAAAATCAAAATATGATATCTAAAATTTCTGGTTTTGTAA</canonical>
            <polymorphic>TACATTTGGAGATCAGAGCTATGTACGAGACCATTCTTGGATGCAGTGACTACTTTGAAAAATGGAACTGTGCTGGCATTCAGAGGTAAATGTCAAATAAGCTAAATTTGTATTATTTTTATTTTGTAACTATCAAATGTTTTATTGCAGGAAACATGTTCTTCGAGTTTAAAACGAATCGAAACCAGTTTAACCCCAAAAGAATCATCAAATTTTTCCCATTTGATGGACCACTAGAAGCTGTTACCACTGATCGACATGGAAATGTGTATTTCTTCAAGGTATTTACAATTTCATACTTACCTGCTAAAAATTATGATACAGAAAGACATATACTGGGTAATGACCAAATACGGTGATATGATGACAGGTTACCCGAAGAAAATATCAGCAGGATTGACCGATACTCCAGATGGTATAAGTGCTGCGTTGTATTATCATCACGATGGGAAACCGTATTTCTTTAAAAGTTGGTTTTTTGGTTATGACAATTGAATATMGAATTTCTAAGATTTTATCATTTGGAAAGTTCGACAGATCGGTGAAATTCATGATCGATCATCATTAGTACCGAGCAGTGCCGCATGTCTCGTTTTGACTTTTTCAGTAGGATCAGTAGGATGCATGGTCAAATTTAGAGTTTGGAAAATCTGAATTCTTCCAATGCTTTGAAAAGTTGGGATTACACAATACATTAATAAATGTATTAATTTATTGTAGTTGACAACTTTTTGTAAAATTTTCTATCTGATGATATATCGGCCCTTTTGTATCTGAAAATGTAACAACAACTCCAAGATGAGCACTGAAATGTTTACGGTTTGAGTGGGTTTTTATTAGAGGATATGCGGTATCTTGCTTTGTTGGGTTTCTACGGAACAGTTTCGTTCAGTTTACTCTGAAATTCTTCAAAAATTGAAAAATGACTGCTTTTTTCAAGACTTAAAGATTTTGACAGGAAAAAATCAAAATATGATATCTAAAATTTCTGGTTTTGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>444 245 164 75 32 24 16</canonical_bands>
                <polymorphic_bands>444 277 164 75 24 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATACTCCAGATGGTATAAGTG</pcr_primer_p1>
		<pcr_primer_p2>TTTCCAAACTCTAAATTTGACC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CGATACTCCAGATGGTATAAGTGCTGCGTTGTATTATCATCACGATGGGAAACCGTATTTCTTTAAAAGTTGGTTTTTTGGTTATGACAATTGAATATCGAATTTCTAAGATTTTATCATTTGGAAAGTTCGACAGATCGGTGAAATTCATGATCGATCATCATTAGTACCGAGCAGTGCCGCATGTCTCGTTTTGACTTTTTCAGTAGGATCAGTAGGATGCATGGTCAAATTTAGAGTTTGGAAA</canonical_amplicon>
		<polymorphic_amplicon>CGATACTCCAGATGGTATAAGTGCTGCGTTGTATTATCATCACGATGGGAAACCGTATTTCTTTAAAAGTTGGTTTTTTGGTTATGACAATTGAATATMGAATTTCTAAGATTTTATCATTTGGAAAGTTCGACAGATCGGTGAAATTCATGATCGATCATCATTAGTACCGAGCAGTGCCGCATGTCTCGTTTTGACTTTTTCAGTAGGATCAGTAGGATGCATGGTCAAATTTAGAGTTTGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1763</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>682753</contig_pos>
        <strand>+</strand>
        <context>TACTTACCTG[C/T]TAAAAATTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACATGGAAATGTGTATTTCTTCAAGGTATTTACAATTTCATACTTACCTG</left_flank>
        <right_flank>TAAAAATTATGATACAGAAAGACATATACTGGGTAATGACCAAATACGGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCACTCTGCGAACCACTTGTCCATAATGGCGCCGTTTTACAAACAGTACACTGGGAACGTAATGCACCTTCACCAAGGTTTGGAACCCAATTAGTCTTCATTCAAATTCGAAAAATATTTTAGATGACATCCAAGCCGTAAAGAGATTGTATGGGTCACCTGTGAAGATCAGGAAAAGAACAAACTCCAATTACATTTGGAGATCAGAGCTATGTACGAGACCATTCTTGGATGCAGTGACTACTTTGAAAAATGGAACTGTGCTGGCATTCAGAGGTAAATGTCAAATAAGCTAAATTTGTATTATTTTTATTTTGTAACTATCAAATGTTTTATTGCAGGAAACATGTTCTTCGAGTTTAAAACGAATCGAAACCAGTTTAACCCCAAAAGAATCATCAAATTTTTCCCATTTGATGGACCACTAGAAGCTGTTACCACTGATCGACATGGAAATGTGTATTTCTTCAAGGTATTTACAATTTCATACTTACCTGCTAAAAATTATGATACAGAAAGACATATACTGGGTAATGACCAAATACGGTGATATGATGACAGGTTACCCGAAGAAAATATCAGCAGGATTGACCGATACTCCAGATGGTATAAGTGCTGCGTTGTATTATCATCACGATGGGAAACCGTATTTCTTTAAAAGTTGGTTTTTTGGTTATGACAATTGAATATCGAATTTCTAAGATTTTATCATTTGGAAAGTTCGACAGATCGGTGAAATTCATGATCGATCATCATTAGTACCGAGCAGTGCCGCATGTCTCGTTTTGACTTTTTCAGTAGGATCAGTAGGATGCATGGTCAAATTTAGAGTTTGGAAAATCTGAATTCTTCCAATGCTTTGAAAAGTTGGGATTACACAATACATTAATAAATGTATTAATTTATTGTAGTTGACAACTTTTTGTAAAATTTTCTATCTGATGATATATCGGCCCTTTTGTATCTGAAAATGTAACAACAACTCCAAGATGAGCACT</canonical>
            <polymorphic>AAGCACTCTGCGAACCACTTGTCCATAATGGCGCCGTTTTACAAACAGTACACTGGGAACGTAATGCACCTTCACCAAGGTTTGGAACCCAATTAGTCTTCATTCAAATTCGAAAAATATTTTAGATGACATCCAAGCCGTAAAGAGATTGTATGGGTCACCTGTGAAGATCAGGAAAAGAACAAACTCCAATTACATTTGGAGATCAGAGCTATGTACGAGACCATTCTTGGATGCAGTGACTACTTTGAAAAATGGAACTGTGCTGGCATTCAGAGGTAAATGTCAAATAAGCTAAATTTGTATTATTTTTATTTTGTAACTATCAAATGTTTTATTGCAGGAAACATGTTCTTCGAGTTTAAAACGAATCGAAACCAGTTTAACCCCAAAAGAATCATCAAATTTTTCCCATTTGATGGACCACTAGAAGCTGTTACCACTGATCGACATGGAAATGTGTATTTCTTCAAGGTATTTACAATTTCATACTTACCTGYTAAAAATTATGATACAGAAAGACATATACTGGGTAATGACCAAATACGGTGATATGATGACAGGTTACCCGAAGAAAATATCAGCAGGATTGACCGATACTCCAGATGGTATAAGTGCTGCGTTGTATTATCATCACGATGGGAAACCGTATTTCTTTAAAAGTTGGTTTTTTGGTTATGACAATTGAATATCGAATTTCTAAGATTTTATCATTTGGAAAGTTCGACAGATCGGTGAAATTCATGATCGATCATCATTAGTACCGAGCAGTGCCGCATGTCTCGTTTTGACTTTTTCAGTAGGATCAGTAGGATGCATGGTCAAATTTAGAGTTTGGAAAATCTGAATTCTTCCAATGCTTTGAAAAGTTGGGATTACACAATACATTAATAAATGTATTAATTTATTGTAGTTGACAACTTTTTGTAAAATTTTCTATCTGATGATATATCGGCCCTTTTGTATCTGAAAATGTAACAACAACTCCAAGATGAGCACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTAGAAGCTGTTACCACTGAT</pcr_primer_p1>
		<pcr_primer_p2>AAAACCAACTTTTAAAGAAATACG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CACTAGAAGCTGTTACCACTGATCGACATGGAAATGTGTATTTCTTCAAGGTATTTACAATTTCATACTTACCTGCTAAAAATTATGATACAGAAAGACATATACTGGGTAATGACCAAATACGGTGATATGATGACAGGTTACCCGAAGAAAATATCAGCAGGATTGACCGATACTCCAGATGGTATAAGTGCTGCGTTGTATTATCATCACGATGGGAAACCGTATTTCTTTAAAAGTTGGTTTT</canonical_amplicon>
		<polymorphic_amplicon>CACTAGAAGCTGTTACCACTGATCGACATGGAAATGTGTATTTCTTCAAGGTATTTACAATTTCATACTTACCTGYTAAAAATTATGATACAGAAAGACATATACTGGGTAATGACCAAATACGGTGATATGATGACAGGTTACCCGAAGAAAATATCAGCAGGATTGACCGATACTCCAGATGGTATAAGTGCTGCGTTGTATTATCATCACGATGGGAAACCGTATTTCTTTAAAAGTTGGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1765</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>723627</contig_pos>
        <strand>+</strand>
        <context>AGGAAAAGAA[C/T]TGCGAAATGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAATGGACACCTTGTGAGACTTGTTCTTCATTTGACAGTAGGAAAAGAA</left_flank>
        <right_flank>TGCGAAATGTGATGGTACAACTGATAACTGTCAAGGTTGGTTATCAAAAT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCTAGAAAAGTTAAGCATTTAAAACTTCTGAAAACTTCGAAATGTTCAATATCGGAATATATCGAAATTCAGAAAATTTCAAAATCGGAATTTATCAAAACTTGAAAATTTTGAAGATCGGATTTTTCTTCATTCCGATTTTTTCTCATTTCGAATATTCTTAATTACAATTACAGTAAAATAAGTGACCAGATTTTTATTTAGATATGAGATAAATTATCGTCCGATCCACTTTTTAATCATCTTTTTTTTACAGCAATGCCCATCCACTTTCTCACTTGCTGTTTGGAGTGAATGGGGTGAATGGACTACATGCTCTGCAACTTGCGGAGAAGGTCTCCAATCTCGTGAAAGATCATGTCGTCGTGGATCCTGTCAAGAATCTGACGCTGCTCAAACGCGCCGGTGTGTCAATGGACCATGTGACCATACTTTCCTCCCATGGTCTGAATGGACACCTTGTGAGACTTGTTCTTCATTTGACAGTAGGAAAAGAATTGCGAAATGTGATGGTACAACTGATAACTGTCAAGGTTGGTTATCAAAATGAGCAATATATCAGTTACTTATTCCAGATAAAATTGATGAAGAAACTTGTGATAATGCTTGCCTTCGAGAACAGCACTCGTTTGGTCCGATTTCTCCAAAACGTCCTAAACTGATTACTAGCAATGAGTTGAGAAAGGTAGTCAAACCCAAAACTCTGAAACTGTTTTTTCCTTCATAATCTCTTTGTTTTAGGCATTTGGTCGTCCACTTCTTCCTATCGAATCCATAACTTCCTCAAAGTGGAGCGAGTGGGGACCGTGTAGTGTTACTTGCGGATCTGGAAGGCGTGTTCGAACACGAGATTGTCAAGAAGAAAATTGTCCAGAGCAGAATATCCAACATGAGGAGTGCAGTTTGAATAGCTGTTTAGGTTTGGGTATCCAAAACATGTCCCATTAAAGCTCCGTAATTTCAGATTTATTTATCTGGAGTGACTGGTCATCGTGCTC</canonical>
            <polymorphic>CTTCTAGAAAAGTTAAGCATTTAAAACTTCTGAAAACTTCGAAATGTTCAATATCGGAATATATCGAAATTCAGAAAATTTCAAAATCGGAATTTATCAAAACTTGAAAATTTTGAAGATCGGATTTTTCTTCATTCCGATTTTTTCTCATTTCGAATATTCTTAATTACAATTACAGTAAAATAAGTGACCAGATTTTTATTTAGATATGAGATAAATTATCGTCCGATCCACTTTTTAATCATCTTTTTTTTACAGCAATGCCCATCCACTTTCTCACTTGCTGTTTGGAGTGAATGGGGTGAATGGACTACATGCTCTGCAACTTGCGGAGAAGGTCTCCAATCTCGTGAAAGATCATGTCGTCGTGGATCCTGTCAAGAATCTGACGCTGCTCAAACGCGCCGGTGTGTCAATGGACCATGTGACCATACTTTCCTCCCATGGTCTGAATGGACACCTTGTGAGACTTGTTCTTCATTTGACAGTAGGAAAAGAAYTGCGAAATGTGATGGTACAACTGATAACTGTCAAGGTTGGTTATCAAAATGAGCAATATATCAGTTACTTATTCCAGATAAAATTGATGAAGAAACTTGTGATAATGCTTGCCTTCGAGAACAGCACTCGTTTGGTCCGATTTCTCCAAAACGTCCTAAACTGATTACTAGCAATGAGTTGAGAAAGGTAGTCAAACCCAAAACTCTGAAACTGTTTTTTCCTTCATAATCTCTTTGTTTTAGGCATTTGGTCGTCCACTTCTTCCTATCGAATCCATAACTTCCTCAAAGTGGAGCGAGTGGGGACCGTGTAGTGTTACTTGCGGATCTGGAAGGCGTGTTCGAACACGAGATTGTCAAGAAGAAAATTGTCCAGAGCAGAATATCCAACATGAGGAGTGCAGTTTGAATAGCTGTTTAGGTTTGGGTATCCAAAACATGTCCCATTAAAGCTCCGTAATTTCAGATTTATTTATCTGGAGTGACTGGTCATCGTGCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>285 281 92 84 67 56 46 42 18 14 9 6</canonical_bands>
                <polymorphic_bands>365 285 92 67 56 46 42 18 14 9 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATGGACACCTTGTGAGAC</pcr_primer_p1>
		<pcr_primer_p2>GTTTGACTACCTTTCTCAACTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAATGGACACCTTGTGAGACTTGTTCTTCATTTGACAGTAGGAAAAGAATTGCGAAATGTGATGGTACAACTGATAACTGTCAAGGTTGGTTATCAAAATGAGCAATATATCAGTTACTTATTCCAGATAAAATTGATGAAGAAACTTGTGATAATGCTTGCCTTCGAGAACAGCACTCGTTTGGTCCGATTTCTCCAAAACGTCCTAAACTGATTACTAGCAATGAGTTGAGAAAGGTAGTCAAAC</canonical_amplicon>
		<polymorphic_amplicon>GAATGGACACCTTGTGAGACTTGTTCTTCATTTGACAGTAGGAAAAGAAYTGCGAAATGTGATGGTACAACTGATAACTGTCAAGGTTGGTTATCAAAATGAGCAATATATCAGTTACTTATTCCAGATAAAATTGATGAAGAAACTTGTGATAATGCTTGCCTTCGAGAACAGCACTCGTTTGGTCCGATTTCTCCAAAACGTCCTAAACTGATTACTAGCAATGAGTTGAGAAAGGTAGTCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1766</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>116326</contig_pos>
        <strand></strand>
        <context>GTTCAATTTT[T/G]CTCATCTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AAAATTTAGAAAAAAAGATAGATCTCGAATCTCTCCATTCGTTCAATTTT</left_flank>
        <right_flank>CTCATCTCTTGACGTCAGTTGAAGATAGTTTCAAAAATAACTTTGGAATT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAAATCAACTAAATTATTCGAATAGTTACTTTGCTGAAAATAAACAAGTACAAATGCAAATATTACTATTTTCTAGCACGCAACTTTACAGTTTTCTCTCAAGTGTTAGAAAGTTGCGAGGTATAGTTTGCACAGAGGTTTTCTTAGAGAACAAACAGCATAAAAGAAGTCAGAAGGAAAAAAGAAAAAAAAATGGAATTTGAAAGAGATCGAAAGGAATATATTGAGTCAAGGAGAAACATTTTTTTTGAAACTGTTTTTTTCTCTTTTTCAGTCGTATGAGTCATCATTTGTTGTTCTTTTGACCTACCAGTGATGCAATTCTTCAGGATTTTTAACTATGACTAACATAAATAAAGTGAACGTTTGTTTAAAATTCAAACAATCGAAAATTGAAACTCGTAACTTGCAGAAGATGAAGTATGTTAGAGATTCTCTTTTAAATTTAAAATTTAGAAAAAAAGATAGATCTCGAATCTCTCCATTCGTTCAATTTTTCTCATCTCTTGACGTCAGTTGAAGATAGTTTCAAAAATAACTTTGGAATTCTAAAAACATTTTTAGCTTTCATAAAACACTGAACTTTTGATTTTTTTTTAACTTGCTTTGGTTCTTTGAACTCTCCTTTCTTTTTAATCCATCACCAAAGTTCTCCATATATTTTTATCAATTGATATGCAAATTTTTTGTTGGTATCACGAGACAACGAGCTACATTGACTGTCAATCAAAAAACCAAAACTCAAACCAATGATGATGGAATTGATACTTGGCTTCCTGATCTAACGTCGAGGAATCATTGAAAAACGAAAATTAGTGCTAAAACTGATCCGACCTGTCTGTGTAGCGTTGTATCGAATTAATAGACTAGCCATGTGGAAACGTATAATTGACGGATCGTCACATTCGATGTTTTTATTGTTGGAATTTTAGTTCTAGTTCCTGGTGGCATTGACGTCAATGGCTACATTTCATCAGTTGTTTCAATTTTAAAAGTTA</canonical>
            <polymorphic>TGGAAATCAACTAAATTATTCGAATAGTTACTTTGCTGAAAATAAACAAGTACAAATGCAAATATTACTATTTTCTAGCACGCAACTTTACAGTTTTCTCTCAAGTGTTAGAAAGTTGCGAGGTATAGTTTGCACAGAGGTTTTCTTAGAGAACAAACAGCATAAAAGAAGTCAGAAGGAAAAAAGAAAAAAAAATGGAATTTGAAAGAGATCGAAAGGAATATATTGAGTCAAGGAGAAACATTTTTTTTGAAACTGTTTTTTTCTCTTTTTCAGTCGTATGAGTCATCATTTGTTGTTCTTTTGACCTACCAGTGATGCAATTCTTCAGGATTTTTAACTATGACTAACATAAATAAAGTGAACGTTTGTTTAAAATTCAAACAATCGAAAATTGAAACTCGTAACTTGCAGAAGATGAAGTATGTTAGAGATTCTCTTTTAAATTTAAAATTTAGAAAAAAAGATAGATCTCGAATCTCTCCATTCGTTCAATTTTKCTCATCTCTTGACGTCAGTTGAAGATAGTTTCAAAAATAACTTTGGAATTCTAAAAACATTTTTAGCTTTCATAAAACACTGAACTTTTGATTTTTTTTTAACTTGCTTTGGTTCTTTGAACTCTCCTTTCTTTTTAATCCATCACCAAAGTTCTCCATATATTTTTATCAATTGATATGCAAATTTTTTGTTGGTATCACGAGACAACGAGCTACATTGACTGTCAATCAAAAAACCAAAACTCAAACCAATGATGATGGAATTGATACTTGGCTTCCTGATCTAACGTCGAGGAATCATTGAAAAACGAAAATTAGTGCTAAAACTGATCCGACCTGTCTGTGTAGCGTTGTATCGAATTAATAGACTAGCCATGTGGAAACGTATAATTGACGGATCGTCACATTCGATGTTTTTATTGTTGGAATTTTAGTTCTAGTTCCTGGTGGCATTGACGTCAATGGCTACATTTCATCAGTTGTTTCAATTTTAAAAGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGAAAATTGAAACTCGTAACT</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGAAAGGAGAGTTCAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCGAAAATTGAAACTCGTAACTTGCAGAAGATGAAGTATGTTAGAGATTCTCTTTTAAATTTAAAATTTAGAAAAAAAGATAGATCTCGAATCTCTCCATTCGTTCAATTTTTCTCATCTCTTGACGTCAGTTGAAGATAGTTTCAAAAATAACTTTGGAATTCTAAAAACATTTTTAGCTTTCATAAAACACTGAACTTTTGATTTTTTTTTAACTTGCTTTGGTTCTTTGAACTCTCCTTTCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATCGAAAATTGAAACTCGTAACTTGCAGAAGATGAAGTATGTTAGAGATTCTCTTTTAAATTTAAAATTTAGAAAAAAAGATAGATCTCGAATCTCTCCATTCGTTCAATTTTKCTCATCTCTTGACGTCAGTTGAAGATAGTTTCAAAAATAACTTTGGAATTCTAAAAACATTTTTAGCTTTCATAAAACACTGAACTTTTGATTTTTTTTTAACTTGCTTTGGTTCTTTGAACTCTCCTTTCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1767</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>118154</contig_pos>
        <strand>+</strand>
        <context>TAAACCACAG[G/T]GAAAATATAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTTGAAGTGCAAGTAGTCCCATCACAAAAAATTATCACGTAAACCACAG</left_flank>
        <right_flank>GAAAATATATGATAAGAATGGGAACGGTTTTCGAAACTTATTTTGATGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTAAAAGGAACTTTCTTTAAAATTTTTTTTCGAAATTTGAAGAAAATTTTAGAACAGTTTCAGATTCAAGGTTCAAATATTACACTCTGGTTGTTAATTTGATTGTAAGCTAATCAAAAACCTACTTTCTGGGTTTGTAATGATAATCAGGCGTCCTCTTCCTCTGTCGCTTTGATCTTCAATTTTTAAGCGGTTAATTACAAATTAACCAGTCACACAAGAACTCACCATTAAAAGTCATTTCTGGCCGAATAATTTTTGATAATATCATGGTTGCAGTGTTGGTTTTGAGATGGTACCTCCACCTGGAAGTATAAAAAATCGAAAATTAAAATAAAAATTTATTTAAAAAAATGATTAAGTCCAATTTTGGAGGGCGTGGATAGAAACAGAAAGAGGAAAGGATCAGACCTTGATTGTTTTATCTTCGATTGATAGTGAATATACTGTTGAAGTGCAAGTAGTCCCATCACAAAAAATTATCACGTAAACCACAGTGAAAATATATGATAAGAATGGGAACGGTTTTCGAAACTTATTTTGATGTTCTAGATTAATTATCAAGTATACAAAAAATGACGTATTTTTGATAAATATGAAATAAAAACTAGCCATTTGGGCGGTACGTAACAGTGTTATTCTATTTTCTGACGGTTTTTCTTGATTCTCAAGGTTTCTCTTAACTGTATTGGTGTGAGTGTAAGTGTGTTTGGGTCAAAATTCAAGCCACTACTTTTTCTTACAGTGTATTCCAAAATTACAAAAGAAGAAGCGACGAAAAAAAAACATGAATTCTATTTTCAGAAGACGTCGCGACTAGGAGGAGTGGTAGCAAAATGAAGAAAAAAGAAGGCGTAAAAACAAAAGTGCTACGCCACTACCACCCGGGGTGGCTGGATTCAAAAATTTAGAGGACAGATTTTCATCTCCACTTTTTTGTCTCTTTCTCTCCACCACCACCTTCTCATGCATAATATTTGAAACAGAAGGAAAAGAAA</canonical>
            <polymorphic>ATCTAAAAGGAACTTTCTTTAAAATTTTTTTTCGAAATTTGAAGAAAATTTTAGAACAGTTTCAGATTCAAGGTTCAAATATTACACTCTGGTTGTTAATTTGATTGTAAGCTAATCAAAAACCTACTTTCTGGGTTTGTAATGATAATCAGGCGTCCTCTTCCTCTGTCGCTTTGATCTTCAATTTTTAAGCGGTTAATTACAAATTAACCAGTCACACAAGAACTCACCATTAAAAGTCATTTCTGGCCGAATAATTTTTGATAATATCATGGTTGCAGTGTTGGTTTTGAGATGGTACCTCCACCTGGAAGTATAAAAAATCGAAAATTAAAATAAAAATTTATTTAAAAAAATGATTAAGTCCAATTTTGGAGGGCGTGGATAGAAACAGAAAGAGGAAAGGATCAGACCTTGATTGTTTTATCTTCGATTGATAGTGAATATACTGTTGAAGTGCAAGTAGTCCCATCACAAAAAATTATCACGTAAACCACAGKGAAAATATATGATAAGAATGGGAACGGTTTTCGAAACTTATTTTGATGTTCTAGATTAATTATCAAGTATACAAAAAATGACGTATTTTTGATAAATATGAAATAAAAACTAGCCATTTGGGCGGTACGTAACAGTGTTATTCTATTTTCTGACGGTTTTTCTTGATTCTCAAGGTTTCTCTTAACTGTATTGGTGTGAGTGTAAGTGTGTTTGGGTCAAAATTCAAGCCACTACTTTTTCTTACAGTGTATTCCAAAATTACAAAAGAAGAAGCGACGAAAAAAAAACATGAATTCTATTTTCAGAAGACGTCGCGACTAGGAGGAGTGGTAGCAAAATGAAGAAAAAAGAAGGCGTAAAAACAAAAGTGCTACGCCACTACCACCCGGGGTGGCTGGATTCAAAAATTTAGAGGACAGATTTTCATCTCCACTTTTTTGTCTCTTTCTCTCCACCACCACCTTCTCATGCATAATATTTGAAACAGAAGGAAAAGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>392 254 108 59 58 48 32 28 21</canonical_bands>
                <polymorphic_bands>392 254 108 76 59 58 32 21</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>136 131 86 81 77 59 59 54 41 39 39 23 22 21 18 17 15 13 10 9 9 8 6 6 5 4 3 3 2 2 2</canonical_bands>
                <polymorphic_bands>141 131 86 81 77 59 59 54 41 39 39 23 22 21 18 17 15 13 10 9 9 8 6 6 4 3 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACTGTTGAAGTGCAAGTAGTCC</pcr_primer_p1>
		<pcr_primer_p2>CACCAATACAGTTAAGAGAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACTGTTGAAGTGCAAGTAGTCCCATCACAAAAAATTATCACGTAAACCACAGTGAAAATATATGATAAGAATGGGAACGGTTTTCGAAACTTATTTTGATGTTCTAGATTAATTATCAAGTATACAAAAAATGACGTATTTTTGATAAATATGAAATAAAAACTAGCCATTTGGGCGGTACGTAACAGTGTTATTCTATTTTCTGACGGTTTTTCTTGATTCTCAAGGTTTCTCTTAACTGTATTGGTG</canonical_amplicon>
		<polymorphic_amplicon>TACTGTTGAAGTGCAAGTAGTCCCATCACAAAAAATTATCACGTAAACCACAGKGAAAATATATGATAAGAATGGGAACGGTTTTCGAAACTTATTTTGATGTTCTAGATTAATTATCAAGTATACAAAAAATGACGTATTTTTGATAAATATGAAATAAAAACTAGCCATTTGGGCGGTACGTAACAGTGTTATTCTATTTTCTGACGGTTTTTCTTGATTCTCAAGGTTTCTCTTAACTGTATTGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1799</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>117858</contig_pos>
        <strand>+</strand>
        <context>GGTTAATTAC[A/T]AATTAACCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGTCCTCTTCCTCTGTCGCTTTGATCTTCAATTTTTAAGCGGTTAATTAC</left_flank>
        <right_flank>AATTAACCAGTCACACAAGAACTCACCATTAAAAGTCATTTCTGGCCGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATTATCACAACCTCTTGTCTCTTTATCTCTCTAAGACCTATTTTTCCGTCGTGAGAAACAAAACAGGGACTCCCCTCCAAACTGAAGATCAGTAGGTGGACTTTCTTCCTCTTCAGAAAGTCTAAAACGAAGAAAAAATGAAAAGAACAGGAAAAACTGATAAGAGCATGGAAAGATGAGAGAACTGTTTTCAAGCATGGCGACATACAAAAAAACAAGAGAGAAACAATATTTTTGATAAGAATTTGAGAAGAAAGGAAGAAAACATGATAGTGATGTCTGTAATACGAGATATCTAAAAGGAACTTTCTTTAAAATTTTTTTTCGAAATTTGAAGAAAATTTTAGAACAGTTTCAGATTCAAGGTTCAAATATTACACTCTGGTTGTTAATTTGATTGTAAGCTAATCAAAAACCTACTTTCTGGGTTTGTAATGATAATCAGGCGTCCTCTTCCTCTGTCGCTTTGATCTTCAATTTTTAAGCGGTTAATTACAAATTAACCAGTCACACAAGAACTCACCATTAAAAGTCATTTCTGGCCGAATAATTTTTGATAATATCATGGTTGCAGTGTTGGTTTTGAGATGGTACCTCCACCTGGAAGTATAAAAAATCGAAAATTAAAATAAAAATTTATTTAAAAAAATGATTAAGTCCAATTTTGGAGGGCGTGGATAGAAACAGAAAGAGGAAAGGATCAGACCTTGATTGTTTTATCTTCGATTGATAGTGAATATACTGTTGAAGTGCAAGTAGTCCCATCACAAAAAATTATCACGTAAACCACAGTGAAAATATATGATAAGAATGGGAACGGTTTTCGAAACTTATTTTGATGTTCTAGATTAATTATCAAGTATACAAAAAATGACGTATTTTTGATAAATATGAAATAAAAACTAGCCATTTGGGCGGTACGTAACAGTGTTATTCTATTTTCTGACGGTTTTTCTTGATTCTCAAGGTTTCTCTTAACTGTATTGGTGTGAGTGTA</canonical>
            <polymorphic>TTTATTATCACAACCTCTTGTCTCTTTATCTCTCTAAGACCTATTTTTCCGTCGTGAGAAACAAAACAGGGACTCCCCTCCAAACTGAAGATCAGTAGGTGGACTTTCTTCCTCTTCAGAAAGTCTAAAACGAAGAAAAAATGAAAAGAACAGGAAAAACTGATAAGAGCATGGAAAGATGAGAGAACTGTTTTCAAGCATGGCGACATACAAAAAAACAAGAGAGAAACAATATTTTTGATAAGAATTTGAGAAGAAAGGAAGAAAACATGATAGTGATGTCTGTAATACGAGATATCTAAAAGGAACTTTCTTTAAAATTTTTTTTCGAAATTTGAAGAAAATTTTAGAACAGTTTCAGATTCAAGGTTCAAATATTACACTCTGGTTGTTAATTTGATTGTAAGCTAATCAAAAACCTACTTTCTGGGTTTGTAATGATAATCAGGCGTCCTCTTCCTCTGTCGCTTTGATCTTCAATTTTTAAGCGGTTAATTACWAATTAACCAGTCACACAAGAACTCACCATTAAAAGTCATTTCTGGCCGAATAATTTTTGATAATATCATGGTTGCAGTGTTGGTTTTGAGATGGTACCTCCACCTGGAAGTATAAAAAATCGAAAATTAAAATAAAAATTTATTTAAAAAAATGATTAAGTCCAATTTTGGAGGGCGTGGATAGAAACAGAAAGAGGAAAGGATCAGACCTTGATTGTTTTATCTTCGATTGATAGTGAATATACTGTTGAAGTGCAAGTAGTCCCATCACAAAAAATTATCACGTAAACCACAGTGAAAATATATGATAAGAATGGGAACGGTTTTCGAAACTTATTTTGATGTTCTAGATTAATTATCAAGTATACAAAAAATGACGTATTTTTGATAAATATGAAATAAAAACTAGCCATTTGGGCGGTACGTAACAGTGTTATTCTATTTTCTGACGGTTTTTCTTGATTCTCAAGGTTTCTCTTAACTGTATTGGTGTGAGTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAACAGTTTCAGATTCAAGGT</pcr_primer_p1>
		<pcr_primer_p2>GTACCATCTCAAAACCAACACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGAACAGTTTCAGATTCAAGGTTCAAATATTACACTCTGGTTGTTAATTTGATTGTAAGCTAATCAAAAACCTACTTTCTGGGTTTGTAATGATAATCAGGCGTCCTCTTCCTCTGTCGCTTTGATCTTCAATTTTTAAGCGGTTAATTACAAATTAACCAGTCACACAAGAACTCACCATTAAAAGTCATTTCTGGCCGAATAATTTTTGATAATATCATGGTTGCAGTGTTGGTTTTGAGATGGTAC</canonical_amplicon>
		<polymorphic_amplicon>TAGAACAGTTTCAGATTCAAGGTTCAAATATTACACTCTGGTTGTTAATTTGATTGTAAGCTAATCAAAAACCTACTTTCTGGGTTTGTAATGATAATCAGGCGTCCTCTTCCTCTGTCGCTTTGATCTTCAATTTTTAAGCGGTTAATTACWAATTAACCAGTCACACAAGAACTCACCATTAAAAGTCATTTCTGGCCGAATAATTTTTGATAATATCATGGTTGCAGTGTTGGTTTTGAGATGGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1800</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>152314</contig_pos>
        <strand>+</strand>
        <context>ACAAGGAACT[C/T]GAGAAACTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCAGCTTGAAGCGTGGATCAATCGAGGAGGTACAGCTGGACAAGGAACT</left_flank>
        <right_flank>GAGAAACTCTCTATTACTCGTCCGACTTCGGTCTTCGCTGAGGATAGAGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTTATAGGGATTGGGTTTAGGCGCTGTTCTTTTTCTTTTTCTTTTCCTTCTTGTACTTTTCTAAGTTTTTTGAGCCTTTCTTCTGATCTTCTCAATCTTCCGTTTTGCAGGAGAAAAAACAGCATGTCCGACTCTCCGAAAGAGTTTGTTCGCGTTCGTGTTCGCAGCACTTTTGAGCTTGCCGATCCACTTTGTGAGCTTCCACCAGATCCGGATTGTAAGATTCTCTCACCAAACACCATTCGCCAAAAGCAGAAGGAAATTGATGATTTGTTGAAGAATGCAAAGTGTGAGGATGGGATGTCGATGGACTCGATTGCCACCTACATTCCATCAAAAGCGACTTTGAAAAAACGTGAGGAGGAAGCAAAGGCTGTTGCTGCTGCTGCCGAGGAAGAACGATTGGCGAAGATTGCTGCACAAATCGCATATCACGAAGCTGCTATTGCCAGCTTGAAGCGTGGATCAATCGAGGAGGTACAGCTGGACAAGGAACTTGAGAAACTCTCTATTACTCGTCCGACTTCGGTCTTCGCTGAGGATAGAGTCATCAACTCTGAACAACACACTCGTTCAAACTGGGCGTCTCGTAATTCATCTGACAGCATCACGATGGTTACATCGCCAACCATCGGAGCACTGGCTGCTGCTCCACCAGCGATGGGAGCTTTGATGGGAGCTCCGCCAGGAGTTGGTGCAATGGTCGTTGCTGCTCTTCAGCCAGGACAGGCTCAAGTAAAACTAATGGAGGGTGGAGAAGCGGATGACAGTTCTCTTAGCGATGTGAGTTTGGCTATGGATGGGATTTCACTACCAAAAATATTTTGAAATAATTTAATTTCAGGATTTTCAAATTGTTCACGACGAGTTCAAACAACCGGATGTCATGGAGAAAGCTTGCAAGAAACAACGCTGAGTACAACACCAATAATTGATCATTTTCCAATCTCTTTGGATTTTTCAAAACTCTCCCTTAGTATATTTTTTTCGATCTCCTG</canonical>
            <polymorphic>CTGTTATAGGGATTGGGTTTAGGCGCTGTTCTTTTTCTTTTTCTTTTCCTTCTTGTACTTTTCTAAGTTTTTTGAGCCTTTCTTCTGATCTTCTCAATCTTCCGTTTTGCAGGAGAAAAAACAGCATGTCCGACTCTCCGAAAGAGTTTGTTCGCGTTCGTGTTCGCAGCACTTTTGAGCTTGCCGATCCACTTTGTGAGCTTCCACCAGATCCGGATTGTAAGATTCTCTCACCAAACACCATTCGCCAAAAGCAGAAGGAAATTGATGATTTGTTGAAGAATGCAAAGTGTGAGGATGGGATGTCGATGGACTCGATTGCCACCTACATTCCATCAAAAGCGACTTTGAAAAAACGTGAGGAGGAAGCAAAGGCTGTTGCTGCTGCTGCCGAGGAAGAACGATTGGCGAAGATTGCTGCACAAATCGCATATCACGAAGCTGCTATTGCCAGCTTGAAGCGTGGATCAATCGAGGAGGTACAGCTGGACAAGGAACTYGAGAAACTCTCTATTACTCGTCCGACTTCGGTCTTCGCTGAGGATAGAGTCATCAACTCTGAACAACACACTCGTTCAAACTGGGCGTCTCGTAATTCATCTGACAGCATCACGATGGTTACATCGCCAACCATCGGAGCACTGGCTGCTGCTCCACCAGCGATGGGAGCTTTGATGGGAGCTCCGCCAGGAGTTGGTGCAATGGTCGTTGCTGCTCTTCAGCCAGGACAGGCTCAAGTAAAACTAATGGAGGGTGGAGAAGCGGATGACAGTTCTCTTAGCGATGTGAGTTTGGCTATGGATGGGATTTCACTACCAAAAATATTTTGAAATAATTTAATTTCAGGATTTTCAAATTGTTCACGACGAGTTCAAACAACCGGATGTCATGGAGAAAGCTTGCAAGAAACAACGCTGAGTACAACACCAATAATTGATCATTTTCCAATCTCTTTGGATTTTTCAAAACTCTCCCTTAGTATATTTTTTTCGATCTCCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>498 267 235</canonical_bands>
                <polymorphic_bands>733 267</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACCTACATTCCATCAAAA</pcr_primer_p1>
		<pcr_primer_p2>GTGTGTTGTTCAGAGTTGATGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCACCTACATTCCATCAAAAGCGACTTTGAAAAAACGTGAGGAGGAAGCAAAGGCTGTTGCTGCTGCTGCCGAGGAAGAACGATTGGCGAAGATTGCTGCACAAATCGCATATCACGAAGCTGCTATTGCCAGCTTGAAGCGTGGATCAATCGAGGAGGTACAGCTGGACAAGGAACTTGAGAAACTCTCTATTACTCGTCCGACTTCGGTCTTCGCTGAGGATAGAGTCATCAACTCTGAACAACACAC</canonical_amplicon>
		<polymorphic_amplicon>CCACCTACATTCCATCAAAAGCGACTTTGAAAAAACGTGAGGAGGAAGCAAAGGCTGTTGCTGCTGCTGCCGAGGAAGAACGATTGGCGAAGATTGCTGCACAAATCGCATATCACGAAGCTGCTATTGCCAGCTTGAAGCGTGGATCAATCGAGGAGGTACAGCTGGACAAGGAACTYGAGAAACTCTCTATTACTCGTCCGACTTCGGTCTTCGCTGAGGATAGAGTCATCAACTCTGAACAACACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1801</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>175339</contig_pos>
        <strand>+</strand>
        <context>CAATTTCCAT[A/G]GATCTAGCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTCACATGACTTTTCGAACATTACCTCCAGGAAATTAAACAATTTCCAT</left_flank>
        <right_flank>GATCTAGCATTGATAATGATATTAGCATATACCAGTCCGCCCATTACCCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGTTTTCTATGACAGAAATGGCAAAGACATCTGTTTTGAGGAAGACAGTAGAACGTACGAATTATAATTTTTGACATATTACTTCATTAGAATTTTAGTAATTTCAAAGTCGATATTGTCGACGATCTTTATAAAATATCTATTTCTATTTTTCAATAAGTCGAAGAAATAATAAAAACTGCCAGCTTGTTTCAGCTTGAAATTTATTTCGATGCTTCTCTAGGAAAACATGCGAGCATCAATTTGTGACTGTTTTCTTCTTCGGATCAGGTTTTGAAAGCATTCCTTAGTGAAACATCCTCTCCCTCCATATCGCCCACGCCATTTTAGCCCACTTTGAAAAACTAAAGTATTTTTTCTCACCTGGCTCACCCCCATCCTTGCATCCCTTATCAAACAGAACACATTCAATTTTTTGTCAGCTCATCCTTTGTCTCCTTCCGGTGCCCTCACATGACTTTTCGAACATTACCTCCAGGAAATTAAACAATTTCCATGGATCTAGCATTGATAATGATATTAGCATATACCAGTCCGCCCATTACCCTATTCTTTCCATTCTATACGCGGAGTATACGTTTTGAAATGTACACCCATCAGAATTCTGAGGAGTATTATGATGCTTTTGATTATTTCTATGATACTCCATCTTTCCGTCCGCAAGCTGGTGAGAAGGATTTGTTGAGAACTGGATCCAAAGATTCGAGATTTCATTATAAATTTTGTTTTTCAGATAACTACAACAATGTGTGCCAGCCAGCTCCTTCAGCTCAGTGGGATACTTCCCTGTCCAATGGACAAGACACGGCTCGCCTAACCGATGGTCAGTTTGATGAATAGTTTCCTTTCACCCTTTTCTATTAACAAATGCTAATGCAGTTGACTCCTTTTTGCCGCCCAACGATATTTATGATCGCTGTTATCTAGATTTTTCCTTTACAATGTTCCATCTTACACATTTTAGAGAAAAAATGACTTGTGAGGTTTCATTCAACGTT</canonical>
            <polymorphic>TCAGTTTTCTATGACAGAAATGGCAAAGACATCTGTTTTGAGGAAGACAGTAGAACGTACGAATTATAATTTTTGACATATTACTTCATTAGAATTTTAGTAATTTCAAAGTCGATATTGTCGACGATCTTTATAAAATATCTATTTCTATTTTTCAATAAGTCGAAGAAATAATAAAAACTGCCAGCTTGTTTCAGCTTGAAATTTATTTCGATGCTTCTCTAGGAAAACATGCGAGCATCAATTTGTGACTGTTTTCTTCTTCGGATCAGGTTTTGAAAGCATTCCTTAGTGAAACATCCTCTCCCTCCATATCGCCCACGCCATTTTAGCCCACTTTGAAAAACTAAAGTATTTTTTCTCACCTGGCTCACCCCCATCCTTGCATCCCTTATCAAACAGAACACATTCAATTTTTTGTCAGCTCATCCTTTGTCTCCTTCCGGTGCCCTCACATGACTTTTCGAACATTACCTCCAGGAAATTAAACAATTTCCATRGATCTAGCATTGATAATGATATTAGCATATACCAGTCCGCCCATTACCCTATTCTTTCCATTCTATACGCGGAGTATACGTTTTGAAATGTACACCCATCAGAATTCTGAGGAGTATTATGATGCTTTTGATTATTTCTATGATACTCCATCTTTCCGTCCGCAAGCTGGTGAGAAGGATTTGTTGAGAACTGGATCCAAAGATTCGAGATTTCATTATAAATTTTGTTTTTCAGATAACTACAACAATGTGTGCCAGCCAGCTCCTTCAGCTCAGTGGGATACTTCCCTGTCCAATGGACAAGACACGGCTCGCCTAACCGATGGTCAGTTTGATGAATAGTTTCCTTTCACCCTTTTCTATTAACAAATGCTAATGCAGTTGACTCCTTTTTGCCGCCCAACGATATTTATGATCGCTGTTATCTAGATTTTTCCTTTACAATGTTCCATCTTACACATTTTAGAGAAAAAATGACTTGTGAGGTTTCATTCAACGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCATGG</site>
                <isoschizomers>
                    <enzyme>Bsp19I</enzyme>
                    <enzyme>NcoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>500 307 193</canonical_bands>
                <polymorphic_bands>693 307</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 231 224 42</canonical_bands>
                <polymorphic_bands>545 231 224</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTATCAAACAGAACACATTCAA</pcr_primer_p1>
		<pcr_primer_p2>TCAAAAGCATCATAATACTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CTTATCAAACAGAACACATTCAATTTTTTGTCAGCTCATCCTTTGTCTCCTTCCGGTGCCCTCACATGACTTTTCGAACATTACCTCCAGGAAATTAAACAATTTCCATGGATCTAGCATTGATAATGATATTAGCATATACCAGTCCGCCCATTACCCTATTCTTTCCATTCTATACGCGGAGTATACGTTTTGAAATGTACACCCATCAGAATTCTGAGGAGTATTATGATGCTTTTGA</canonical_amplicon>
		<polymorphic_amplicon>CTTATCAAACAGAACACATTCAATTTTTTGTCAGCTCATCCTTTGTCTCCTTCCGGTGCCCTCACATGACTTTTCGAACATTACCTCCAGGAAATTAAACAATTTCCATRGATCTAGCATTGATAATGATATTAGCATATACCAGTCCGCCCATTACCCTATTCTTTCCATTCTATACGCGGAGTATACGTTTTGAAATGTACACCCATCAGAATTCTGAGGAGTATTATGATGCTTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1802</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>175359</contig_pos>
        <strand>+</strand>
        <context>TTGATAATGA[G/T]ATTAGCATAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTACCTCCAGGAAATTAAACAATTTCCATGGATCTAGCATTGATAATGA</left_flank>
        <right_flank>ATTAGCATATACCAGTCCGCCCATTACCCTATTCTTTCCATTCTATACGC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCAAAGACATCTGTTTTGAGGAAGACAGTAGAACGTACGAATTATAATTTTTGACATATTACTTCATTAGAATTTTAGTAATTTCAAAGTCGATATTGTCGACGATCTTTATAAAATATCTATTTCTATTTTTCAATAAGTCGAAGAAATAATAAAAACTGCCAGCTTGTTTCAGCTTGAAATTTATTTCGATGCTTCTCTAGGAAAACATGCGAGCATCAATTTGTGACTGTTTTCTTCTTCGGATCAGGTTTTGAAAGCATTCCTTAGTGAAACATCCTCTCCCTCCATATCGCCCACGCCATTTTAGCCCACTTTGAAAAACTAAAGTATTTTTTCTCACCTGGCTCACCCCCATCCTTGCATCCCTTATCAAACAGAACACATTCAATTTTTTGTCAGCTCATCCTTTGTCTCCTTCCGGTGCCCTCACATGACTTTTCGAACATTACCTCCAGGAAATTAAACAATTTCCATGGATCTAGCATTGATAATGATATTAGCATATACCAGTCCGCCCATTACCCTATTCTTTCCATTCTATACGCGGAGTATACGTTTTGAAATGTACACCCATCAGAATTCTGAGGAGTATTATGATGCTTTTGATTATTTCTATGATACTCCATCTTTCCGTCCGCAAGCTGGTGAGAAGGATTTGTTGAGAACTGGATCCAAAGATTCGAGATTTCATTATAAATTTTGTTTTTCAGATAACTACAACAATGTGTGCCAGCCAGCTCCTTCAGCTCAGTGGGATACTTCCCTGTCCAATGGACAAGACACGGCTCGCCTAACCGATGGTCAGTTTGATGAATAGTTTCCTTTCACCCTTTTCTATTAACAAATGCTAATGCAGTTGACTCCTTTTTGCCGCCCAACGATATTTATGATCGCTGTTATCTAGATTTTTCCTTTACAATGTTCCATCTTACACATTTTAGAGAAAAAATGACTTGTGAGGTTTCATTCAACGTTGGGGACCCAAGTCACCCAAG</canonical>
            <polymorphic>TGGCAAAGACATCTGTTTTGAGGAAGACAGTAGAACGTACGAATTATAATTTTTGACATATTACTTCATTAGAATTTTAGTAATTTCAAAGTCGATATTGTCGACGATCTTTATAAAATATCTATTTCTATTTTTCAATAAGTCGAAGAAATAATAAAAACTGCCAGCTTGTTTCAGCTTGAAATTTATTTCGATGCTTCTCTAGGAAAACATGCGAGCATCAATTTGTGACTGTTTTCTTCTTCGGATCAGGTTTTGAAAGCATTCCTTAGTGAAACATCCTCTCCCTCCATATCGCCCACGCCATTTTAGCCCACTTTGAAAAACTAAAGTATTTTTTCTCACCTGGCTCACCCCCATCCTTGCATCCCTTATCAAACAGAACACATTCAATTTTTTGTCAGCTCATCCTTTGTCTCCTTCCGGTGCCCTCACATGACTTTTCGAACATTACCTCCAGGAAATTAAACAATTTCCATGGATCTAGCATTGATAATGAKATTAGCATATACCAGTCCGCCCATTACCCTATTCTTTCCATTCTATACGCGGAGTATACGTTTTGAAATGTACACCCATCAGAATTCTGAGGAGTATTATGATGCTTTTGATTATTTCTATGATACTCCATCTTTCCGTCCGCAAGCTGGTGAGAAGGATTTGTTGAGAACTGGATCCAAAGATTCGAGATTTCATTATAAATTTTGTTTTTCAGATAACTACAACAATGTGTGCCAGCCAGCTCCTTCAGCTCAGTGGGATACTTCCCTGTCCAATGGACAAGACACGGCTCGCCTAACCGATGGTCAGTTTGATGAATAGTTTCCTTTCACCCTTTTCTATTAACAAATGCTAATGCAGTTGACTCCTTTTTGCCGCCCAACGATATTTATGATCGCTGTTATCTAGATTTTTCCTTTACAATGTTCCATCTTACACATTTTAGAGAAAAAATGACTTGTGAGGTTTCATTCAACGTTGGGGACCCAAGTCACCCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTATCAAACAGAACACATTCAA</pcr_primer_p1>
		<pcr_primer_p2>TCAAAAGCATCATAATACTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CTTATCAAACAGAACACATTCAATTTTTTGTCAGCTCATCCTTTGTCTCCTTCCGGTGCCCTCACATGACTTTTCGAACATTACCTCCAGGAAATTAAACAATTTCCATGGATCTAGCATTGATAATGATATTAGCATATACCAGTCCGCCCATTACCCTATTCTTTCCATTCTATACGCGGAGTATACGTTTTGAAATGTACACCCATCAGAATTCTGAGGAGTATTATGATGCTTTTGA</canonical_amplicon>
		<polymorphic_amplicon>CTTATCAAACAGAACACATTCAATTTTTTGTCAGCTCATCCTTTGTCTCCTTCCGGTGCCCTCACATGACTTTTCGAACATTACCTCCAGGAAATTAAACAATTTCCATGGATCTAGCATTGATAATGAKATTAGCATATACCAGTCCGCCCATTACCCTATTCTTTCCATTCTATACGCGGAGTATACGTTTTGAAATGTACACCCATCAGAATTCTGAGGAGTATTATGATGCTTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1803</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>177142</contig_pos>
        <strand>+</strand>
        <context>TTTTTTGAAA[C/T]TTCAAGAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATTATATGACTTCTCAGCCTTTGCCAAATTTGGTAATGTTTTTTGAAA</left_flank>
        <right_flank>TTCAAGAATATTCAAGAAGGAACTTGTTCTGAAAAAAGTCAAAACAACTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCAAAACCCAGGCCTGAGGAAATTTTTAAGGCCCGGACCCGGTATCAAAAATCATGTATTTTTAAGCCAAATTTTGAGCTCTCAGTATAATTTTCTCCATTTTTTTGTTATTTTGGATTGTTTGTCTGTTTGCTCTAAAAAGATCGAAAAAACTCGAAAAAAAATTTTTGATCGAAAAAAATCACATAACCCTTATGTGTTTTTCGAAGTTTTCAAAACTTGTGAAATGACAGGCNNNNNNNNNNGCCGGTCCGGGCCGGGCCTTCGAATTTCGGAAAAAAACCCGGCCCGGCCCGTTACAAGTATGCTTTTATGTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATTTTGGCCAATGAACCACGTCAATAACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAATGACTTTTATTCACGATCAGAACCCAATTATATGACTTCTCAGCCTTTGCCAAATTTGGTAATGTTTTTTGAAATTTCAAGAATATTCAAGAAGGAACTTGTTCTGAAAAAAGTCAAAACAACTTTTATATTATACTTGCAAAACGAGAGCTCGGCCCGGCCCTTTTTCTGGAAAAAACTTTGCCGGCCCGTCTCAAGGATTTTCATATGTCCAAATTTGAAGGCCTAGATCAAACCAGCAAATTTAATGTTTTGAAATTTTTTGAAAAATCTAATATTTTTTAAATTGTAATTTTACCTCGAAAAAGTATCAGCTCTTGGATTCTATACTTCACCCGGAAAGGGGGAAGATATGGTGATGTTTTATTACCGAGCTCACGCTTTTCTACATGAAAACGTGAAAGTGCACACGAGTTGAATCGAAATTTTAAAATAAACTCAGCGTTTTTAAAAAACGTTTTGAGATTCCAATGAGTTATATGTTAGAAGGAGTCTGGACTATTAGAAACGGTAGCTACAACTTTCGAAAATTATAACTCCTCTATACTAATTGATATTCGTTTCCGATTATAATT</canonical>
            <polymorphic>GCCAAAACCCAGGCCTGAGGAAATTTTTAAGGCCCGGACCCGGTATCAAAAATCATGTATTTTTAAGCCAAATTTTGAGCTCTCAGTATAATTTTCTCCATTTTTTTGTTATTTTGGATTGTTTGTCTGTTTGCTCTAAAAAGATCGAAAAAACTCGAAAAAAAATTTTTGATCGAAAAAAATCACATAACCCTTATGTGTTTTTCGAAGTTTTCAAAACTTGTGAAATGACAGGCNNNNNNNNNNGCCGGTCCGGGCCGGGCCTTCGAATTTCGGAAAAAAACCCGGCCCGGCCCGTTACAAGTATGCTTTTATGTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATTTTGGCCAATGAACCACGTCAATAACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAATGACTTTTATTCACGATCAGAACCCAATTATATGACTTCTCAGCCTTTGCCAAATTTGGTAATGTTTTTTGAAAYTTCAAGAATATTCAAGAAGGAACTTGTTCTGAAAAAAGTCAAAACAACTTTTATATTATACTTGCAAAACGAGAGCTCGGCCCGGCCCTTTTTCTGGAAAAAACTTTGCCGGCCCGTCTCAAGGATTTTCATATGTCCAAATTTGAAGGCCTAGATCAAACCAGCAAATTTAATGTTTTGAAATTTTTTGAAAAATCTAATATTTTTTAAATTGTAATTTTACCTCGAAAAAGTATCAGCTCTTGGATTCTATACTTCACCCGGAAAGGGGGAAGATATGGTGATGTTTTATTACCGAGCTCACGCTTTTCTACATGAAAACGTGAAAGTGCACACGAGTTGAATCGAAATTTTAAAATAAACTCAGCGTTTTTAAAAAACGTTTTGAGATTCCAATGAGTTATATGTTAGAAGGAGTCTGGACTATTAGAAACGGTAGCTACAACTTTCGAAAATTATAACTCCTCTATACTAATTGATATTCGTTTCCGATTATAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>167 152 143 142 105 93 66 49 27 21 20 15</canonical_bands>
                <polymorphic_bands>167 162 152 143 105 93 66 49 27 21 15</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>142 133 105 105 97 74 66 49 28 27 27 23 21 20 20 19 19 15 6 4</canonical_bands>
                <polymorphic_bands>162 133 105 105 97 74 66 49 28 27 27 23 21 20 19 19 15 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGCTCATAAGCCTTTCAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCTCGTTTTGCAAGTATAATATAAA</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>GTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATTTTGGCCAATGAACCACGTCAATAACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAATGACTTTTATTCACGATCAGAACCCAATTATATGACTTCTCAGCCTTTGCCAAATTTGGTAATGTTTTTTGAAATTTCAAGAATATTCAAGAAGGAACTTGTTCTGAAAAAAGTCAAAACAACTTTTATATTATACTTGCAAAACGAGA</canonical_amplicon>
		<polymorphic_amplicon>GTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATTTTGGCCAATGAACCACGTCAATAACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAATGACTTTTATTCACGATCAGAACCCAATTATATGACTTCTCAGCCTTTGCCAAATTTGGTAATGTTTTTTGAAAYTTCAAGAATATTCAAGAAGGAACTTGTTCTGAAAAAAGTCAAAACAACTTTTATATTATACTTGCAAAACGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1804</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>177111</contig_pos>
        <strand>+</strand>
        <context>GACTTCTCAG[C/T]CTTTGCCAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCAAATGACTTTTATTCACGATCAGAACCCAATTATATGACTTCTCAG</left_flank>
        <right_flank>CTTTGCCAAATTTGGTAATGTTTTTTGAAATTTCAAGAATATTCAAGAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGCATACTTGTAAAATTCCGGGTCGACCCGCCAAAACCCAGGCCTGAGGAAATTTTTAAGGCCCGGACCCGGTATCAAAAATCATGTATTTTTAAGCCAAATTTTGAGCTCTCAGTATAATTTTCTCCATTTTTTTGTTATTTTGGATTGTTTGTCTGTTTGCTCTAAAAAGATCGAAAAAACTCGAAAAAAAATTTTTGATCGAAAAAAATCACATAACCCTTATGTGTTTTTCGAAGTTTTCAAAACTTGTGAAATGACAGGCNNNNNNNNNNGCCGGTCCGGGCCGGGCCTTCGAATTTCGGAAAAAAACCCGGCCCGGCCCGTTACAAGTATGCTTTTATGTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATTTTGGCCAATGAACCACGTCAATAACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAATGACTTTTATTCACGATCAGAACCCAATTATATGACTTCTCAGCCTTTGCCAAATTTGGTAATGTTTTTTGAAATTTCAAGAATATTCAAGAAGGAACTTGTTCTGAAAAAAGTCAAAACAACTTTTATATTATACTTGCAAAACGAGAGCTCGGCCCGGCCCTTTTTCTGGAAAAAACTTTGCCGGCCCGTCTCAAGGATTTTCATATGTCCAAATTTGAAGGCCTAGATCAAACCAGCAAATTTAATGTTTTGAAATTTTTTGAAAAATCTAATATTTTTTAAATTGTAATTTTACCTCGAAAAAGTATCAGCTCTTGGATTCTATACTTCACCCGGAAAGGGGGAAGATATGGTGATGTTTTATTACCGAGCTCACGCTTTTCTACATGAAAACGTGAAAGTGCACACGAGTTGAATCGAAATTTTAAAATAAACTCAGCGTTTTTAAAAAACGTTTTGAGATTCCAATGAGTTATATGTTAGAAGGAGTCTGGACTATTAGAAACGGTAGCTACAACTTTCGAAAATTATAACTCCTCTA</canonical>
            <polymorphic>CATGCATACTTGTAAAATTCCGGGTCGACCCGCCAAAACCCAGGCCTGAGGAAATTTTTAAGGCCCGGACCCGGTATCAAAAATCATGTATTTTTAAGCCAAATTTTGAGCTCTCAGTATAATTTTCTCCATTTTTTTGTTATTTTGGATTGTTTGTCTGTTTGCTCTAAAAAGATCGAAAAAACTCGAAAAAAAATTTTTGATCGAAAAAAATCACATAACCCTTATGTGTTTTTCGAAGTTTTCAAAACTTGTGAAATGACAGGCNNNNNNNNNNGCCGGTCCGGGCCGGGCCTTCGAATTTCGGAAAAAAACCCGGCCCGGCCCGTTACAAGTATGCTTTTATGTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATTTTGGCCAATGAACCACGTCAATAACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAATGACTTTTATTCACGATCAGAACCCAATTATATGACTTCTCAGYCTTTGCCAAATTTGGTAATGTTTTTTGAAATTTCAAGAATATTCAAGAAGGAACTTGTTCTGAAAAAAGTCAAAACAACTTTTATATTATACTTGCAAAACGAGAGCTCGGCCCGGCCCTTTTTCTGGAAAAAACTTTGCCGGCCCGTCTCAAGGATTTTCATATGTCCAAATTTGAAGGCCTAGATCAAACCAGCAAATTTAATGTTTTGAAATTTTTTGAAAAATCTAATATTTTTTAAATTGTAATTTTACCTCGAAAAAGTATCAGCTCTTGGATTCTATACTTCACCCGGAAAGGGGGAAGATATGGTGATGTTTTATTACCGAGCTCACGCTTTTCTACATGAAAACGTGAAAGTGCACACGAGTTGAATCGAAATTTTAAAATAAACTCAGCGTTTTTAAAAAACGTTTTGAGATTCCAATGAGTTATATGTTAGAAGGAGTCTGGACTATTAGAAACGGTAGCTACAACTTTCGAAAATTATAACTCCTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>178 140 107 107 90 60 44 37 35 34 30 27 26 26 19 12 8 5 5 5 5</canonical_bands>
                <polymorphic_bands>214 178 140 90 60 44 37 35 34 30 27 26 26 19 12 8 5 5 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGTTACAAGTATGCTTTTATGT</pcr_primer_p1>
		<pcr_primer_p2>CAGAACAAGTTCCTTCTTGAATA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CCGTTACAAGTATGCTTTTATGTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATTTTGGCCAATGAACCACGTCAATAACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAATGACTTTTATTCACGATCAGAACCCAATTATATGACTTCTCAGCCTTTGCCAAATTTGGTAATGTTTTTTGAAATTTCAAGAATATTCAAGAAGGAACTTGTTCTG</canonical_amplicon>
		<polymorphic_amplicon>CCGTTACAAGTATGCTTTTATGTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATTTTGGCCAATGAACCACGTCAATAACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAATGACTTTTATTCACGATCAGAACCCAATTATATGACTTCTCAGYCTTTGCCAAATTTGGTAATGTTTTTTGAAATTTCAAGAATATTCAAGAAGGAACTTGTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1805</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>177099</contig_pos>
        <strand>+</strand>
        <context>ACCCAATTAT[A/T]TGACTTCTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAGTTTTTTCTTTCCAAATGACTTTTATTCACGATCAGAACCCAATTAT</left_flank>
        <right_flank>TGACTTCTCAGCCTTTGCCAAATTTGGTAATGTTTTTTGAAATTTCAAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAAAAGACTTTCATGCATACTTGTAAAATTCCGGGTCGACCCGCCAAAACCCAGGCCTGAGGAAATTTTTAAGGCCCGGACCCGGTATCAAAAATCATGTATTTTTAAGCCAAATTTTGAGCTCTCAGTATAATTTTCTCCATTTTTTTGTTATTTTGGATTGTTTGTCTGTTTGCTCTAAAAAGATCGAAAAAACTCGAAAAAAAATTTTTGATCGAAAAAAATCACATAACCCTTATGTGTTTTTCGAAGTTTTCAAAACTTGTGAAATGACAGGCNNNNNNNNNNGCCGGTCCGGGCCGGGCCTTCGAATTTCGGAAAAAAACCCGGCCCGGCCCGTTACAAGTATGCTTTTATGTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATTTTGGCCAATGAACCACGTCAATAACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAATGACTTTTATTCACGATCAGAACCCAATTATATGACTTCTCAGCCTTTGCCAAATTTGGTAATGTTTTTTGAAATTTCAAGAATATTCAAGAAGGAACTTGTTCTGAAAAAAGTCAAAACAACTTTTATATTATACTTGCAAAACGAGAGCTCGGCCCGGCCCTTTTTCTGGAAAAAACTTTGCCGGCCCGTCTCAAGGATTTTCATATGTCCAAATTTGAAGGCCTAGATCAAACCAGCAAATTTAATGTTTTGAAATTTTTTGAAAAATCTAATATTTTTTAAATTGTAATTTTACCTCGAAAAAGTATCAGCTCTTGGATTCTATACTTCACCCGGAAAGGGGGAAGATATGGTGATGTTTTATTACCGAGCTCACGCTTTTCTACATGAAAACGTGAAAGTGCACACGAGTTGAATCGAAATTTTAAAATAAACTCAGCGTTTTTAAAAAACGTTTTGAGATTCCAATGAGTTATATGTTAGAAGGAGTCTGGACTATTAGAAACGGTAGCTACAACTTTCGAAAATT</canonical>
            <polymorphic>GTAAAAGACTTTCATGCATACTTGTAAAATTCCGGGTCGACCCGCCAAAACCCAGGCCTGAGGAAATTTTTAAGGCCCGGACCCGGTATCAAAAATCATGTATTTTTAAGCCAAATTTTGAGCTCTCAGTATAATTTTCTCCATTTTTTTGTTATTTTGGATTGTTTGTCTGTTTGCTCTAAAAAGATCGAAAAAACTCGAAAAAAAATTTTTGATCGAAAAAAATCACATAACCCTTATGTGTTTTTCGAAGTTTTCAAAACTTGTGAAATGACAGGCNNNNNNNNNNGCCGGTCCGGGCCGGGCCTTCGAATTTCGGAAAAAAACCCGGCCCGGCCCGTTACAAGTATGCTTTTATGTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATTTTGGCCAATGAACCACGTCAATAACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAATGACTTTTATTCACGATCAGAACCCAATTATWTGACTTCTCAGCCTTTGCCAAATTTGGTAATGTTTTTTGAAATTTCAAGAATATTCAAGAAGGAACTTGTTCTGAAAAAAGTCAAAACAACTTTTATATTATACTTGCAAAACGAGAGCTCGGCCCGGCCCTTTTTCTGGAAAAAACTTTGCCGGCCCGTCTCAAGGATTTTCATATGTCCAAATTTGAAGGCCTAGATCAAACCAGCAAATTTAATGTTTTGAAATTTTTTGAAAAATCTAATATTTTTTAAATTGTAATTTTACCTCGAAAAAGTATCAGCTCTTGGATTCTATACTTCACCCGGAAAGGGGGAAGATATGGTGATGTTTTATTACCGAGCTCACGCTTTTCTACATGAAAACGTGAAAGTGCACACGAGTTGAATCGAAATTTTAAAATAAACTCAGCGTTTTTAAAAAACGTTTTGAGATTCCAATGAGTTATATGTTAGAAGGAGTCTGGACTATTAGAAACGGTAGCTACAACTTTCGAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGTTACAAGTATGCTTTTATGT</pcr_primer_p1>
		<pcr_primer_p2>CAGAACAAGTTCCTTCTTGAATA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CCGTTACAAGTATGCTTTTATGTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATTTTGGCCAATGAACCACGTCAATAACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAATGACTTTTATTCACGATCAGAACCCAATTATATGACTTCTCAGCCTTTGCCAAATTTGGTAATGTTTTTTGAAATTTCAAGAATATTCAAGAAGGAACTTGTTCTG</canonical_amplicon>
		<polymorphic_amplicon>CCGTTACAAGTATGCTTTTATGTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATTTTGGCCAATGAACCACGTCAATAACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAATGACTTTTATTCACGATCAGAACCCAATTATWTGACTTCTCAGCCTTTGCCAAATTTGGTAATGTTTTTTGAAATTTCAAGAATATTCAAGAAGGAACTTGTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1806</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>177073</contig_pos>
        <strand>+</strand>
        <context>CCAWATGACT[G/T]TTATTCACGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAATGACT</left_flank>
        <right_flank>TTATTCACGATCAGAACCCAATTATATGACTTCTCAGCCTTTGCCAAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATATTGAATCAAGAATTATTTATTAGTAAAAGACTTTCATGCATACTTGTAAAATTCCGGGTCGACCCGCCAAAACCCAGGCCTGAGGAAATTTTTAAGGCCCGGACCCGGTATCAAAAATCATGTATTTTTAAGCCAAATTTTGAGCTCTCAGTATAATTTTCTCCATTTTTTTGTTATTTTGGATTGTTTGTCTGTTTGCTCTAAAAAGATCGAAAAAACTCGAAAAAAAATTTTTGATCGAAAAAAATCACATAACCCTTATGTGTTTTTCGAAGTTTTCAAAACTTGTGAAATGACAGGCNNNNNNNNNNGCCGGTCCGGGCCGGGCCTTCGAATTTCGGAAAAAAACCCGGCCCGGCCCGTTACAAGTATGCTTTTATGTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATTTTGGCCAATGAACCACGTCAATAACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAATGACTTTTATTCACGATCAGAACCCAATTATATGACTTCTCAGCCTTTGCCAAATTTGGTAATGTTTTTTGAAATTTCAAGAATATTCAAGAAGGAACTTGTTCTGAAAAAAGTCAAAACAACTTTTATATTATACTTGCAAAACGAGAGCTCGGCCCGGCCCTTTTTCTGGAAAAAACTTTGCCGGCCCGTCTCAAGGATTTTCATATGTCCAAATTTGAAGGCCTAGATCAAACCAGCAAATTTAATGTTTTGAAATTTTTTGAAAAATCTAATATTTTTTAAATTGTAATTTTACCTCGAAAAAGTATCAGCTCTTGGATTCTATACTTCACCCGGAAAGGGGGAAGATATGGTGATGTTTTATTACCGAGCTCACGCTTTTCTACATGAAAACGTGAAAGTGCACACGAGTTGAATCGAAATTTTAAAATAAACTCAGCGTTTTTAAAAAACGTTTTGAGATTCCAATGAGTTATATGTTAGAAGGAGTCTGGACTATTAGA</canonical>
            <polymorphic>GATATTGAATCAAGAATTATTTATTAGTAAAAGACTTTCATGCATACTTGTAAAATTCCGGGTCGACCCGCCAAAACCCAGGCCTGAGGAAATTTTTAAGGCCCGGACCCGGTATCAAAAATCATGTATTTTTAAGCCAAATTTTGAGCTCTCAGTATAATTTTCTCCATTTTTTTGTTATTTTGGATTGTTTGTCTGTTTGCTCTAAAAAGATCGAAAAAACTCGAAAAAAAATTTTTGATCGAAAAAAATCACATAACCCTTATGTGTTTTTCGAAGTTTTCAAAACTTGTGAAATGACAGGCNNNNNNNNNNGCCGGTCCGGGCCGGGCCTTCGAATTTCGGAAAAAAACCCGGCCCGGCCCGTTACAAGTATGCTTTTATGTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATTTTGGCCAATGAACCACGTCAATAACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAATGACTKTTATTCACGATCAGAACCCAATTATATGACTTCTCAGCCTTTGCCAAATTTGGTAATGTTTTTTGAAATTTCAAGAATATTCAAGAAGGAACTTGTTCTGAAAAAAGTCAAAACAACTTTTATATTATACTTGCAAAACGAGAGCTCGGCCCGGCCCTTTTTCTGGAAAAAACTTTGCCGGCCCGTCTCAAGGATTTTCATATGTCCAAATTTGAAGGCCTAGATCAAACCAGCAAATTTAATGTTTTGAAATTTTTTGAAAAATCTAATATTTTTTAAATTGTAATTTTACCTCGAAAAAGTATCAGCTCTTGGATTCTATACTTCACCCGGAAAGGGGGAAGATATGGTGATGTTTTATTACCGAGCTCACGCTTTTCTACATGAAAACGTGAAAGTGCACACGAGTTGAATCGAAATTTTAAAATAAACTCAGCGTTTTTAAAAAACGTTTTGAGATTCCAATGAGTTATATGTTAGAAGGAGTCTGGACTATTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGTTACAAGTATGCTTTTATGT</pcr_primer_p1>
		<pcr_primer_p2>CAGAACAAGTTCCTTCTTGAATA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CCGTTACAAGTATGCTTTTATGTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATTTTGGCCAATGAACCACGTCAATAACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAATGACTTTTATTCACGATCAGAACCCAATTATATGACTTCTCAGCCTTTGCCAAATTTGGTAATGTTTTTTGAAATTTCAAGAATATTCAAGAAGGAACTTGTTCTG</canonical_amplicon>
		<polymorphic_amplicon>CCGTTACAAGTATGCTTTTATGTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATTTTGGCCAATGAACCACGTCAATAACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAATGACTKTTATTCACGATCAGAACCCAATTATATGACTTCTCAGCCTTTGCCAAATTTGGTAATGTTTTTTGAAATTTCAAGAATATTCAAGAAGGAACTTGTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1807</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>177066</contig_pos>
        <strand>+</strand>
        <context>TTTCTTTCCA[A/T]ATGACTKTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCAATAACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCA</left_flank>
        <right_flank>ATGACTTTTATTCACGATCAGAACCCAATTATATGACTTCTCAGCCTTTG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATAGCAGATATTGAATCAAGAATTATTTATTAGTAAAAGACTTTCATGCATACTTGTAAAATTCCGGGTCGACCCGCCAAAACCCAGGCCTGAGGAAATTTTTAAGGCCCGGACCCGGTATCAAAAATCATGTATTTTTAAGCCAAATTTTGAGCTCTCAGTATAATTTTCTCCATTTTTTTGTTATTTTGGATTGTTTGTCTGTTTGCTCTAAAAAGATCGAAAAAACTCGAAAAAAAATTTTTGATCGAAAAAAATCACATAACCCTTATGTGTTTTTCGAAGTTTTCAAAACTTGTGAAATGACAGGCNNNNNNNNNNGCCGGTCCGGGCCGGGCCTTCGAATTTCGGAAAAAAACCCGGCCCGGCCCGTTACAAGTATGCTTTTATGTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATTTTGGCCAATGAACCACGTCAATAACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAATGACTTTTATTCACGATCAGAACCCAATTATATGACTTCTCAGCCTTTGCCAAATTTGGTAATGTTTTTTGAAATTTCAAGAATATTCAAGAAGGAACTTGTTCTGAAAAAAGTCAAAACAACTTTTATATTATACTTGCAAAACGAGAGCTCGGCCCGGCCCTTTTTCTGGAAAAAACTTTGCCGGCCCGTCTCAAGGATTTTCATATGTCCAAATTTGAAGGCCTAGATCAAACCAGCAAATTTAATGTTTTGAAATTTTTTGAAAAATCTAATATTTTTTAAATTGTAATTTTACCTCGAAAAAGTATCAGCTCTTGGATTCTATACTTCACCCGGAAAGGGGGAAGATATGGTGATGTTTTATTACCGAGCTCACGCTTTTCTACATGAAAACGTGAAAGTGCACACGAGTTGAATCGAAATTTTAAAATAAACTCAGCGTTTTTAAAAAACGTTTTGAGATTCCAATGAGTTATATGTTAGAAGGAGTCTGGAC</canonical>
            <polymorphic>CATAGCAGATATTGAATCAAGAATTATTTATTAGTAAAAGACTTTCATGCATACTTGTAAAATTCCGGGTCGACCCGCCAAAACCCAGGCCTGAGGAAATTTTTAAGGCCCGGACCCGGTATCAAAAATCATGTATTTTTAAGCCAAATTTTGAGCTCTCAGTATAATTTTCTCCATTTTTTTGTTATTTTGGATTGTTTGTCTGTTTGCTCTAAAAAGATCGAAAAAACTCGAAAAAAAATTTTTGATCGAAAAAAATCACATAACCCTTATGTGTTTTTCGAAGTTTTCAAAACTTGTGAAATGACAGGCNNNNNNNNNNGCCGGTCCGGGCCGGGCCTTCGAATTTCGGAAAAAAACCCGGCCCGGCCCGTTACAAGTATGCTTTTATGTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATTTTGGCCAATGAACCACGTCAATAACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAWATGACTTTTATTCACGATCAGAACCCAATTATATGACTTCTCAGCCTTTGCCAAATTTGGTAATGTTTTTTGAAATTTCAAGAATATTCAAGAAGGAACTTGTTCTGAAAAAAGTCAAAACAACTTTTATATTATACTTGCAAAACGAGAGCTCGGCCCGGCCCTTTTTCTGGAAAAAACTTTGCCGGCCCGTCTCAAGGATTTTCATATGTCCAAATTTGAAGGCCTAGATCAAACCAGCAAATTTAATGTTTTGAAATTTTTTGAAAAATCTAATATTTTTTAAATTGTAATTTTACCTCGAAAAAGTATCAGCTCTTGGATTCTATACTTCACCCGGAAAGGGGGAAGATATGGTGATGTTTTATTACCGAGCTCACGCTTTTCTACATGAAAACGTGAAAGTGCACACGAGTTGAATCGAAATTTTAAAATAAACTCAGCGTTTTTAAAAAACGTTTTGAGATTCCAATGAGTTATATGTTAGAAGGAGTCTGGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGTTACAAGTATGCTTTTATGT</pcr_primer_p1>
		<pcr_primer_p2>CAGAACAAGTTCCTTCTTGAATA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CCGTTACAAGTATGCTTTTATGTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATTTTGGCCAATGAACCACGTCAATAACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAATGACTTTTATTCACGATCAGAACCCAATTATATGACTTCTCAGCCTTTGCCAAATTTGGTAATGTTTTTTGAAATTTCAAGAATATTCAAGAAGGAACTTGTTCTG</canonical_amplicon>
		<polymorphic_amplicon>CCGTTACAAGTATGCTTTTATGTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATTTTGGCCAATGAACCACGTCAATAACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAWATGACTTTTATTCACGATCAGAACCCAATTATATGACTTCTCAGCCTTTGCCAAATTTGGTAATGTTTTTTGAAATTTCAAGAATATTCAAGAAGGAACTTGTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1808</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>177027</contig_pos>
        <strand>+</strand>
        <context>TYAATAACCG[A/G]AGGGTATTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTTTTCAATGGACTTTAATTTTGGCCAATGAACCACGTCAATAACCG</left_flank>
        <right_flank>AGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAATGACTTTTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTCACCTTACTAACGTAAAACAAATTTATGTCAATTTTCATAGCAGATATTGAATCAAGAATTATTTATTAGTAAAAGACTTTCATGCATACTTGTAAAATTCCGGGTCGACCCGCCAAAACCCAGGCCTGAGGAAATTTTTAAGGCCCGGACCCGGTATCAAAAATCATGTATTTTTAAGCCAAATTTTGAGCTCTCAGTATAATTTTCTCCATTTTTTTGTTATTTTGGATTGTTTGTCTGTTTGCTCTAAAAAGATCGAAAAAACTCGAAAAAAAATTTTTGATCGAAAAAAATCACATAACCCTTATGTGTTTTTCGAAGTTTTCAAAACTTGTGAAATGACAGGCNNNNNNNNNNGCCGGTCCGGGCCGGGCCTTCGAATTTCGGAAAAAAACCCGGCCCGGCCCGTTACAAGTATGCTTTTATGTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATTTTGGCCAATGAACCACGTCAATAACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAATGACTTTTATTCACGATCAGAACCCAATTATATGACTTCTCAGCCTTTGCCAAATTTGGTAATGTTTTTTGAAATTTCAAGAATATTCAAGAAGGAACTTGTTCTGAAAAAAGTCAAAACAACTTTTATATTATACTTGCAAAACGAGAGCTCGGCCCGGCCCTTTTTCTGGAAAAAACTTTGCCGGCCCGTCTCAAGGATTTTCATATGTCCAAATTTGAAGGCCTAGATCAAACCAGCAAATTTAATGTTTTGAAATTTTTTGAAAAATCTAATATTTTTTAAATTGTAATTTTACCTCGAAAAAGTATCAGCTCTTGGATTCTATACTTCACCCGGAAAGGGGGAAGATATGGTGATGTTTTATTACCGAGCTCACGCTTTTCTACATGAAAACGTGAAAGTGCACACGAGTTGAATCGAAATTTTAAAATAAACTCAGCGTTTTTAAAAAACGTTT</canonical>
            <polymorphic>GGTCACCTTACTAACGTAAAACAAATTTATGTCAATTTTCATAGCAGATATTGAATCAAGAATTATTTATTAGTAAAAGACTTTCATGCATACTTGTAAAATTCCGGGTCGACCCGCCAAAACCCAGGCCTGAGGAAATTTTTAAGGCCCGGACCCGGTATCAAAAATCATGTATTTTTAAGCCAAATTTTGAGCTCTCAGTATAATTTTCTCCATTTTTTTGTTATTTTGGATTGTTTGTCTGTTTGCTCTAAAAAGATCGAAAAAACTCGAAAAAAAATTTTTGATCGAAAAAAATCACATAACCCTTATGTGTTTTTCGAAGTTTTCAAAACTTGTGAAATGACAGGCNNNNNNNNNNGCCGGTCCGGGCCGGGCCTTCGAATTTCGGAAAAAAACCCGGCCCGGCCCGTTACAAGTATGCTTTTATGTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATTTTGGCCAATGAACCACGTCAATAACCGRAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAATGACTTTTATTCACGATCAGAACCCAATTATATGACTTCTCAGCCTTTGCCAAATTTGGTAATGTTTTTTGAAATTTCAAGAATATTCAAGAAGGAACTTGTTCTGAAAAAAGTCAAAACAACTTTTATATTATACTTGCAAAACGAGAGCTCGGCCCGGCCCTTTTTCTGGAAAAAACTTTGCCGGCCCGTCTCAAGGATTTTCATATGTCCAAATTTGAAGGCCTAGATCAAACCAGCAAATTTAATGTTTTGAAATTTTTTGAAAAATCTAATATTTTTTAAATTGTAATTTTACCTCGAAAAAGTATCAGCTCTTGGATTCTATACTTCACCCGGAAAGGGGGAAGATATGGTGATGTTTTATTACCGAGCTCACGCTTTTCTACATGAAAACGTGAAAGTGCACACGAGTTGAATCGAAATTTTAAAATAAACTCAGCGTTTTTAAAAAACGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>208 177 152 124 104 92 45 27 27 23 6 5 5 5</canonical_bands>
                <polymorphic_bands>208 177 152 124 115 104 45 27 27 6 5 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGTTACAAGTATGCTTTTATGT</pcr_primer_p1>
		<pcr_primer_p2>CAGAACAAGTTCCTTCTTGAATA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CCGTTACAAGTATGCTTTTATGTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATTTTGGCCAATGAACCACGTCAATAACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAATGACTTTTATTCACGATCAGAACCCAATTATATGACTTCTCAGCCTTTGCCAAATTTGGTAATGTTTTTTGAAATTTCAAGAATATTCAAGAAGGAACTTGTTCTG</canonical_amplicon>
		<polymorphic_amplicon>CCGTTACAAGTATGCTTTTATGTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATTTTGGCCAATGAACCACGTCAATAACCGRAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAATGACTTTTATTCACGATCAGAACCCAATTATATGACTTCTCAGCCTTTGCCAAATTTGGTAATGTTTTTTGAAATTTCAAGAATATTCAAGAAGGAACTTGTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1809</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>177018</contig_pos>
        <strand>+</strand>
        <context>TGAACCACGT[C/T]AATAACCGRA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCCTTTCAAATTTTTTCAATGGACTTTAATTTTGGCCAATGAACCACGT</left_flank>
        <right_flank>AATAACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATAAAAGGGTCACCTTACTAACGTAAAACAAATTTATGTCAATTTTCATAGCAGATATTGAATCAAGAATTATTTATTAGTAAAAGACTTTCATGCATACTTGTAAAATTCCGGGTCGACCCGCCAAAACCCAGGCCTGAGGAAATTTTTAAGGCCCGGACCCGGTATCAAAAATCATGTATTTTTAAGCCAAATTTTGAGCTCTCAGTATAATTTTCTCCATTTTTTTGTTATTTTGGATTGTTTGTCTGTTTGCTCTAAAAAGATCGAAAAAACTCGAAAAAAAATTTTTGATCGAAAAAAATCACATAACCCTTATGTGTTTTTCGAAGTTTTCAAAACTTGTGAAATGACAGGCNNNNNNNNNNGCCGGTCCGGGCCGGGCCTTCGAATTTCGGAAAAAAACCCGGCCCGGCCCGTTACAAGTATGCTTTTATGTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATTTTGGCCAATGAACCACGTCAATAACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAATGACTTTTATTCACGATCAGAACCCAATTATATGACTTCTCAGCCTTTGCCAAATTTGGTAATGTTTTTTGAAATTTCAAGAATATTCAAGAAGGAACTTGTTCTGAAAAAAGTCAAAACAACTTTTATATTATACTTGCAAAACGAGAGCTCGGCCCGGCCCTTTTTCTGGAAAAAACTTTGCCGGCCCGTCTCAAGGATTTTCATATGTCCAAATTTGAAGGCCTAGATCAAACCAGCAAATTTAATGTTTTGAAATTTTTTGAAAAATCTAATATTTTTTAAATTGTAATTTTACCTCGAAAAAGTATCAGCTCTTGGATTCTATACTTCACCCGGAAAGGGGGAAGATATGGTGATGTTTTATTACCGAGCTCACGCTTTTCTACATGAAAACGTGAAAGTGCACACGAGTTGAATCGAAATTTTAAAATAAACTCAGCGTTTTTAA</canonical>
            <polymorphic>TGATAAAAGGGTCACCTTACTAACGTAAAACAAATTTATGTCAATTTTCATAGCAGATATTGAATCAAGAATTATTTATTAGTAAAAGACTTTCATGCATACTTGTAAAATTCCGGGTCGACCCGCCAAAACCCAGGCCTGAGGAAATTTTTAAGGCCCGGACCCGGTATCAAAAATCATGTATTTTTAAGCCAAATTTTGAGCTCTCAGTATAATTTTCTCCATTTTTTTGTTATTTTGGATTGTTTGTCTGTTTGCTCTAAAAAGATCGAAAAAACTCGAAAAAAAATTTTTGATCGAAAAAAATCACATAACCCTTATGTGTTTTTCGAAGTTTTCAAAACTTGTGAAATGACAGGCNNNNNNNNNNGCCGGTCCGGGCCGGGCCTTCGAATTTCGGAAAAAAACCCGGCCCGGCCCGTTACAAGTATGCTTTTATGTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATTTTGGCCAATGAACCACGTYAATAACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAATGACTTTTATTCACGATCAGAACCCAATTATATGACTTCTCAGCCTTTGCCAAATTTGGTAATGTTTTTTGAAATTTCAAGAATATTCAAGAAGGAACTTGTTCTGAAAAAAGTCAAAACAACTTTTATATTATACTTGCAAAACGAGAGCTCGGCCCGGCCCTTTTTCTGGAAAAAACTTTGCCGGCCCGTCTCAAGGATTTTCATATGTCCAAATTTGAAGGCCTAGATCAAACCAGCAAATTTAATGTTTTGAAATTTTTTGAAAAATCTAATATTTTTTAAATTGTAATTTTACCTCGAAAAAGTATCAGCTCTTGGATTCTATACTTCACCCGGAAAGGGGGAAGATATGGTGATGTTTTATTACCGAGCTCACGCTTTTCTACATGAAAACGTGAAAGTGCACACGAGTTGAATCGAAATTTTAAAATAAACTCAGCGTTTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGTTACAAGTATGCTTTTATGT</pcr_primer_p1>
		<pcr_primer_p2>CAGAACAAGTTCCTTCTTGAATA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CCGTTACAAGTATGCTTTTATGTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATTTTGGCCAATGAACCACGTCAATAACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAATGACTTTTATTCACGATCAGAACCCAATTATATGACTTCTCAGCCTTTGCCAAATTTGGTAATGTTTTTTGAAATTTCAAGAATATTCAAGAAGGAACTTGTTCTG</canonical_amplicon>
		<polymorphic_amplicon>CCGTTACAAGTATGCTTTTATGTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATTTTGGCCAATGAACCACGTYAATAACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAATGACTTTTATTCACGATCAGAACCCAATTATATGACTTCTCAGCCTTTGCCAAATTTGGTAATGTTTTTTGAAATTTCAAGAATATTCAAGAAGGAACTTGTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1810</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>177000</contig_pos>
        <strand>+</strand>
        <context>GACTTTAATT[C/T]TGGCCAATGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTTTTATGTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATT</left_flank>
        <right_flank>TGGCCAATGAACCACGTCAATAACCGGAGGGTATTCATTTCGATCGCCGG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTACCGCTGTAACTTGTGATAAAAGGGTCACCTTACTAACGTAAAACAAATTTATGTCAATTTTCATAGCAGATATTGAATCAAGAATTATTTATTAGTAAAAGACTTTCATGCATACTTGTAAAATTCCGGGTCGACCCGCCAAAACCCAGGCCTGAGGAAATTTTTAAGGCCCGGACCCGGTATCAAAAATCATGTATTTTTAAGCCAAATTTTGAGCTCTCAGTATAATTTTCTCCATTTTTTTGTTATTTTGGATTGTTTGTCTGTTTGCTCTAAAAAGATCGAAAAAACTCGAAAAAAAATTTTTGATCGAAAAAAATCACATAACCCTTATGTGTTTTTCGAAGTTTTCAAAACTTGTGAAATGACAGGCNNNNNNNNNNGCCGGTCCGGGCCGGGCCTTCGAATTTCGGAAAAAAACCCGGCCCGGCCCGTTACAAGTATGCTTTTATGTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATTTTGGCCAATGAACCACGTCAATAACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAATGACTTTTATTCACGATCAGAACCCAATTATATGACTTCTCAGCCTTTGCCAAATTTGGTAATGTTTTTTGAAATTTCAAGAATATTCAAGAAGGAACTTGTTCTGAAAAAAGTCAAAACAACTTTTATATTATACTTGCAAAACGAGAGCTCGGCCCGGCCCTTTTTCTGGAAAAAACTTTGCCGGCCCGTCTCAAGGATTTTCATATGTCCAAATTTGAAGGCCTAGATCAAACCAGCAAATTTAATGTTTTGAAATTTTTTGAAAAATCTAATATTTTTTAAATTGTAATTTTACCTCGAAAAAGTATCAGCTCTTGGATTCTATACTTCACCCGGAAAGGGGGAAGATATGGTGATGTTTTATTACCGAGCTCACGCTTTTCTACATGAAAACGTGAAAGTGCACACGAGTTGAATCGAAATTTTAAAA</canonical>
            <polymorphic>CATTACCGCTGTAACTTGTGATAAAAGGGTCACCTTACTAACGTAAAACAAATTTATGTCAATTTTCATAGCAGATATTGAATCAAGAATTATTTATTAGTAAAAGACTTTCATGCATACTTGTAAAATTCCGGGTCGACCCGCCAAAACCCAGGCCTGAGGAAATTTTTAAGGCCCGGACCCGGTATCAAAAATCATGTATTTTTAAGCCAAATTTTGAGCTCTCAGTATAATTTTCTCCATTTTTTTGTTATTTTGGATTGTTTGTCTGTTTGCTCTAAAAAGATCGAAAAAACTCGAAAAAAAATTTTTGATCGAAAAAAATCACATAACCCTTATGTGTTTTTCGAAGTTTTCAAAACTTGTGAAATGACAGGCNNNNNNNNNNGCCGGTCCGGGCCGGGCCTTCGAATTTCGGAAAAAAACCCGGCCCGGCCCGTTACAAGTATGCTTTTATGTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATTYTGGCCAATGAACCACGTCAATAACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAATGACTTTTATTCACGATCAGAACCCAATTATATGACTTCTCAGCCTTTGCCAAATTTGGTAATGTTTTTTGAAATTTCAAGAATATTCAAGAAGGAACTTGTTCTGAAAAAAGTCAAAACAACTTTTATATTATACTTGCAAAACGAGAGCTCGGCCCGGCCCTTTTTCTGGAAAAAACTTTGCCGGCCCGTCTCAAGGATTTTCATATGTCCAAATTTGAAGGCCTAGATCAAACCAGCAAATTTAATGTTTTGAAATTTTTTGAAAAATCTAATATTTTTTAAATTGTAATTTTACCTCGAAAAAGTATCAGCTCTTGGATTCTATACTTCACCCGGAAAGGGGGAAGATATGGTGATGTTTTATTACCGAGCTCACGCTTTTCTACATGAAAACGTGAAAGTGCACACGAGTTGAATCGAAATTTTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGTTACAAGTATGCTTTTATGT</pcr_primer_p1>
		<pcr_primer_p2>CAGAACAAGTTCCTTCTTGAATA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CCGTTACAAGTATGCTTTTATGTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATTTTGGCCAATGAACCACGTCAATAACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAATGACTTTTATTCACGATCAGAACCCAATTATATGACTTCTCAGCCTTTGCCAAATTTGGTAATGTTTTTTGAAATTTCAAGAATATTCAAGAAGGAACTTGTTCTG</canonical_amplicon>
		<polymorphic_amplicon>CCGTTACAAGTATGCTTTTATGTAGCTCATAAGCCTTTCAAATTTTTTCAATGGACTTTAATTYTGGCCAATGAACCACGTCAATAACCGGAGGGTATTCATTTCGATCGCCGGAGTTTTTTCTTTCCAAATGACTTTTATTCACGATCAGAACCCAATTATATGACTTCTCAGCCTTTGCCAAATTTGGTAATGTTTTTTGAAATTTCAAGAATATTCAAGAAGGAACTTGTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1811</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>231730</contig_pos>
        <strand>+</strand>
        <context>GCTGGGTTAT[C/G]GAGTGTGCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGAAAAGAACACAAAAAAATGTTTCGAAATATCCGACGGGGCTGGGTTAT</left_flank>
        <right_flank>GAGTGTGCACGGGTGTGGTCTGGCGGGGTGGGTGCAGAAAACCGAAAGAT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCTCACTTTGACTGCCATTTCTACTCCTGTCGGTATATGAAGCATTTTTCGAACGACACCAAAACTCCCATTCCCCAAAAGTTCCATCTCTTCCAAGTGATGTCTTTCGAACTCGTGGACTTCGCCATTTGGAGGTATGATCAGTGTGTTTGAGAGGTATTGTTTAACATAATCTCTGAAAAATTTCCTTGCAATTTCTCGCCATCCATCAAAAAAAAACTCACAAGCTATTCATATTATCGTCATTTGACGAATCTTGTACGGGCGGATGTATTTCACTAAGGTTGAGCTTTGCTAAATTGTGGCGATTCCTGGGCGGAGCAAAGGTCTGAAATTGTTTTGAAATATCGTCCCACTATTCAACGTTTCATTAACAAATCTTACATAAGTTTGCCCATTTCCGTCCGGCATCGCCGGAGGCAGTTGTCGTTTTCGGGTCGTCTTACTGAAAAGAACACAAAAAAATGTTTCGAAATATCCGACGGGGCTGGGTTATGGAGTGTGCACGGGTGTGGTCTGGCGGGGTGGGTGCAGAAAACCGAAAGATTTCGTCATTATTGACTGCCGTTTTTCATTAAACGAGGTAAATTACCTTTGTGTGACGCTCTCTTTGCATGCACTCGACTTGACGACATTTTGCGGACTTGGCCTGTGAGAAGAAAATTTAGTGATAAGTGGTTTGAGCGATGAGTGATTGACAAAAAATTTGGATGAAAAAATTCTTTGAACTTTTCTATGCTAGATTCTGGTGATTGGACACTTTGAAACTTTCAAAACTTAGGTGATGAGCAAGAGAACAGAAAATCGATATTGTTCGGCCTGACCTCCGGACCGTTTGCGCACAATGCGCACAATGCCAATGAGACCCCCCAAACGGACTTCCTCGCACACACACACACAGTCTGATGAGACACCACGCTGACTAACAAGACAAGGGTCATGACGACTGATGTAATAAAATTTGCATCTATTCCTCATTCCTCATTTTTTTCAAAAT</canonical>
            <polymorphic>AATTCTCACTTTGACTGCCATTTCTACTCCTGTCGGTATATGAAGCATTTTTCGAACGACACCAAAACTCCCATTCCCCAAAAGTTCCATCTCTTCCAAGTGATGTCTTTCGAACTCGTGGACTTCGCCATTTGGAGGTATGATCAGTGTGTTTGAGAGGTATTGTTTAACATAATCTCTGAAAAATTTCCTTGCAATTTCTCGCCATCCATCAAAAAAAAACTCACAAGCTATTCATATTATCGTCATTTGACGAATCTTGTACGGGCGGATGTATTTCACTAAGGTTGAGCTTTGCTAAATTGTGGCGATTCCTGGGCGGAGCAAAGGTCTGAAATTGTTTTGAAATATCGTCCCACTATTCAACGTTTCATTAACAAATCTTACATAAGTTTGCCCATTTCCGTCCGGCATCGCCGGAGGCAGTTGTCGTTTTCGGGTCGTCTTACTGAAAAGAACACAAAAAAATGTTTCGAAATATCCGACGGGGCTGGGTTATSGAGTGTGCACGGGTGTGGTCTGGCGGGGTGGGTGCAGAAAACCGAAAGATTTCGTCATTATTGACTGCCGTTTTTCATTAAACGAGGTAAATTACCTTTGTGTGACGCTCTCTTTGCATGCACTCGACTTGACGACATTTTGCGGACTTGGCCTGTGAGAAGAAAATTTAGTGATAAGTGGTTTGAGCGATGAGTGATTGACAAAAAATTTGGATGAAAAAATTCTTTGAACTTTTCTATGCTAGATTCTGGTGATTGGACACTTTGAAACTTTCAAAACTTAGGTGATGAGCAAGAGAACAGAAAATCGATATTGTTCGGCCTGACCTCCGGACCGTTTGCGCACAATGCGCACAATGCCAATGAGACCCCCCAAACGGACTTCCTCGCACACACACACACAGTCTGATGAGACACCACGCTGACTAACAAGACAAGGGTCATGACGACTGATGTAATAAAATTTGCATCTATTCCTCATTCCTCATTTTTTTCAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCGTCTTACTGAAAAGAACACA</pcr_primer_p1>
		<pcr_primer_p2>GCTCAAACCACTTATCACTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCGTCTTACTGAAAAGAACACAAAAAAATGTTTCGAAATATCCGACGGGGCTGGGTTATGGAGTGTGCACGGGTGTGGTCTGGCGGGGTGGGTGCAGAAAACCGAAAGATTTCGTCATTATTGACTGCCGTTTTTCATTAAACGAGGTAAATTACCTTTGTGTGACGCTCTCTTTGCATGCACTCGACTTGACGACATTTTGCGGACTTGGCCTGTGAGAAGAAAATTTAGTGATAAGTGGTTTGAGC</canonical_amplicon>
		<polymorphic_amplicon>GTCGTCTTACTGAAAAGAACACAAAAAAATGTTTCGAAATATCCGACGGGGCTGGGTTATSGAGTGTGCACGGGTGTGGTCTGGCGGGGTGGGTGCAGAAAACCGAAAGATTTCGTCATTATTGACTGCCGTTTTTCATTAAACGAGGTAAATTACCTTTGTGTGACGCTCTCTTTGCATGCACTCGACTTGACGACATTTTGCGGACTTGGCCTGTGAGAAGAAAATTTAGTGATAAGTGGTTTGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1812</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>231814</contig_pos>
        <strand>+</strand>
        <context>TTCATTAAAC[G/T]AGGTAARTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCAGAAAACCGAAAGATTTCGTCATTATTGACTGCCGTTTTTCATTAAAC</left_flank>
        <right_flank>AGGTAAATTACCTTTGTGTGACGCTCTCTTTGCATGCACTCGACTTGACG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCATCTCTTCCAAGTGATGTCTTTCGAACTCGTGGACTTCGCCATTTGGAGGTATGATCAGTGTGTTTGAGAGGTATTGTTTAACATAATCTCTGAAAAATTTCCTTGCAATTTCTCGCCATCCATCAAAAAAAAACTCACAAGCTATTCATATTATCGTCATTTGACGAATCTTGTACGGGCGGATGTATTTCACTAAGGTTGAGCTTTGCTAAATTGTGGCGATTCCTGGGCGGAGCAAAGGTCTGAAATTGTTTTGAAATATCGTCCCACTATTCAACGTTTCATTAACAAATCTTACATAAGTTTGCCCATTTCCGTCCGGCATCGCCGGAGGCAGTTGTCGTTTTCGGGTCGTCTTACTGAAAAGAACACAAAAAAATGTTTCGAAATATCCGACGGGGCTGGGTTATGGAGTGTGCACGGGTGTGGTCTGGCGGGGTGGGTGCAGAAAACCGAAAGATTTCGTCATTATTGACTGCCGTTTTTCATTAAACGAGGTAAATTACCTTTGTGTGACGCTCTCTTTGCATGCACTCGACTTGACGACATTTTGCGGACTTGGCCTGTGAGAAGAAAATTTAGTGATAAGTGGTTTGAGCGATGAGTGATTGACAAAAAATTTGGATGAAAAAATTCTTTGAACTTTTCTATGCTAGATTCTGGTGATTGGACACTTTGAAACTTTCAAAACTTAGGTGATGAGCAAGAGAACAGAAAATCGATATTGTTCGGCCTGACCTCCGGACCGTTTGCGCACAATGCGCACAATGCCAATGAGACCCCCCAAACGGACTTCCTCGCACACACACACACAGTCTGATGAGACACCACGCTGACTAACAAGACAAGGGTCATGACGACTGATGTAATAAAATTTGCATCTATTCCTCATTCCTCATTTTTTTCAAAATTTTGAATTTTCAAAAAAGAAACTCCACAAAAAAACAATAACCTACTTTCTCTTTCTTCGCTCCATGACTTTGGAAAACAAAACG</canonical>
            <polymorphic>TTCCATCTCTTCCAAGTGATGTCTTTCGAACTCGTGGACTTCGCCATTTGGAGGTATGATCAGTGTGTTTGAGAGGTATTGTTTAACATAATCTCTGAAAAATTTCCTTGCAATTTCTCGCCATCCATCAAAAAAAAACTCACAAGCTATTCATATTATCGTCATTTGACGAATCTTGTACGGGCGGATGTATTTCACTAAGGTTGAGCTTTGCTAAATTGTGGCGATTCCTGGGCGGAGCAAAGGTCTGAAATTGTTTTGAAATATCGTCCCACTATTCAACGTTTCATTAACAAATCTTACATAAGTTTGCCCATTTCCGTCCGGCATCGCCGGAGGCAGTTGTCGTTTTCGGGTCGTCTTACTGAAAAGAACACAAAAAAATGTTTCGAAATATCCGACGGGGCTGGGTTATGGAGTGTGCACGGGTGTGGTCTGGCGGGGTGGGTGCAGAAAACCGAAAGATTTCGTCATTATTGACTGCCGTTTTTCATTAAACKAGGTAAATTACCTTTGTGTGACGCTCTCTTTGCATGCACTCGACTTGACGACATTTTGCGGACTTGGCCTGTGAGAAGAAAATTTAGTGATAAGTGGTTTGAGCGATGAGTGATTGACAAAAAATTTGGATGAAAAAATTCTTTGAACTTTTCTATGCTAGATTCTGGTGATTGGACACTTTGAAACTTTCAAAACTTAGGTGATGAGCAAGAGAACAGAAAATCGATATTGTTCGGCCTGACCTCCGGACCGTTTGCGCACAATGCGCACAATGCCAATGAGACCCCCCAAACGGACTTCCTCGCACACACACACACAGTCTGATGAGACACCACGCTGACTAACAAGACAAGGGTCATGACGACTGATGTAATAAAATTTGCATCTATTCCTCATTCCTCATTTTTTTCAAAATTTTGAATTTTCAAAAAAGAAACTCCACAAAAAAACAATAACCTACTTTCTCTTTCTTCGCTCCATGACTTTGGAAAACAAAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCGTCTTACTGAAAAGAACACA</pcr_primer_p1>
		<pcr_primer_p2>GCTCAAACCACTTATCACTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCGTCTTACTGAAAAGAACACAAAAAAATGTTTCGAAATATCCGACGGGGCTGGGTTATGGAGTGTGCACGGGTGTGGTCTGGCGGGGTGGGTGCAGAAAACCGAAAGATTTCGTCATTATTGACTGCCGTTTTTCATTAAACGAGGTAAATTACCTTTGTGTGACGCTCTCTTTGCATGCACTCGACTTGACGACATTTTGCGGACTTGGCCTGTGAGAAGAAAATTTAGTGATAAGTGGTTTGAGC</canonical_amplicon>
		<polymorphic_amplicon>GTCGTCTTACTGAAAAGAACACAAAAAAATGTTTCGAAATATCCGACGGGGCTGGGTTATGGAGTGTGCACGGGTGTGGTCTGGCGGGGTGGGTGCAGAAAACCGAAAGATTTCGTCATTATTGACTGCCGTTTTTCATTAAACKAGGTAAATTACCTTTGTGTGACGCTCTCTTTGCATGCACTCGACTTGACGACATTTTGCGGACTTGGCCTGTGAGAAGAAAATTTAGTGATAAGTGGTTTGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1813</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>231821</contig_pos>
        <strand>+</strand>
        <context>AACKAGGTAA[A/G]TTACCTTTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCGAAAGATTTCGTCATTATTGACTGCCGTTTTTCATTAAACGAGGTAA</left_flank>
        <right_flank>TTACCTTTGTGTGACGCTCTCTTTGCATGCACTCGACTTGACGACATTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTCCAAGTGATGTCTTTCGAACTCGTGGACTTCGCCATTTGGAGGTATGATCAGTGTGTTTGAGAGGTATTGTTTAACATAATCTCTGAAAAATTTCCTTGCAATTTCTCGCCATCCATCAAAAAAAAACTCACAAGCTATTCATATTATCGTCATTTGACGAATCTTGTACGGGCGGATGTATTTCACTAAGGTTGAGCTTTGCTAAATTGTGGCGATTCCTGGGCGGAGCAAAGGTCTGAAATTGTTTTGAAATATCGTCCCACTATTCAACGTTTCATTAACAAATCTTACATAAGTTTGCCCATTTCCGTCCGGCATCGCCGGAGGCAGTTGTCGTTTTCGGGTCGTCTTACTGAAAAGAACACAAAAAAATGTTTCGAAATATCCGACGGGGCTGGGTTATGGAGTGTGCACGGGTGTGGTCTGGCGGGGTGGGTGCAGAAAACCGAAAGATTTCGTCATTATTGACTGCCGTTTTTCATTAAACGAGGTAAATTACCTTTGTGTGACGCTCTCTTTGCATGCACTCGACTTGACGACATTTTGCGGACTTGGCCTGTGAGAAGAAAATTTAGTGATAAGTGGTTTGAGCGATGAGTGATTGACAAAAAATTTGGATGAAAAAATTCTTTGAACTTTTCTATGCTAGATTCTGGTGATTGGACACTTTGAAACTTTCAAAACTTAGGTGATGAGCAAGAGAACAGAAAATCGATATTGTTCGGCCTGACCTCCGGACCGTTTGCGCACAATGCGCACAATGCCAATGAGACCCCCCAAACGGACTTCCTCGCACACACACACACAGTCTGATGAGACACCACGCTGACTAACAAGACAAGGGTCATGACGACTGATGTAATAAAATTTGCATCTATTCCTCATTCCTCATTTTTTTCAAAATTTTGAATTTTCAAAAAAGAAACTCCACAAAAAAACAATAACCTACTTTCTCTTTCTTCGCTCCATGACTTTGGAAAACAAAACGAAACAAA</canonical>
            <polymorphic>TCTTCCAAGTGATGTCTTTCGAACTCGTGGACTTCGCCATTTGGAGGTATGATCAGTGTGTTTGAGAGGTATTGTTTAACATAATCTCTGAAAAATTTCCTTGCAATTTCTCGCCATCCATCAAAAAAAAACTCACAAGCTATTCATATTATCGTCATTTGACGAATCTTGTACGGGCGGATGTATTTCACTAAGGTTGAGCTTTGCTAAATTGTGGCGATTCCTGGGCGGAGCAAAGGTCTGAAATTGTTTTGAAATATCGTCCCACTATTCAACGTTTCATTAACAAATCTTACATAAGTTTGCCCATTTCCGTCCGGCATCGCCGGAGGCAGTTGTCGTTTTCGGGTCGTCTTACTGAAAAGAACACAAAAAAATGTTTCGAAATATCCGACGGGGCTGGGTTATGGAGTGTGCACGGGTGTGGTCTGGCGGGGTGGGTGCAGAAAACCGAAAGATTTCGTCATTATTGACTGCCGTTTTTCATTAAACGAGGTAARTTACCTTTGTGTGACGCTCTCTTTGCATGCACTCGACTTGACGACATTTTGCGGACTTGGCCTGTGAGAAGAAAATTTAGTGATAAGTGGTTTGAGCGATGAGTGATTGACAAAAAATTTGGATGAAAAAATTCTTTGAACTTTTCTATGCTAGATTCTGGTGATTGGACACTTTGAAACTTTCAAAACTTAGGTGATGAGCAAGAGAACAGAAAATCGATATTGTTCGGCCTGACCTCCGGACCGTTTGCGCACAATGCGCACAATGCCAATGAGACCCCCCAAACGGACTTCCTCGCACACACACACACAGTCTGATGAGACACCACGCTGACTAACAAGACAAGGGTCATGACGACTGATGTAATAAAATTTGCATCTATTCCTCATTCCTCATTTTTTTCAAAATTTTGAATTTTCAAAAAAGAAACTCCACAAAAAAACAATAACCTACTTTCTCTTTCTTCGCTCCATGACTTTGGAAAACAAAACGAAACAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>254 241 105 93 87 75 42 36 35 14 11 7</canonical_bands>
                <polymorphic_bands>329 241 105 93 87 42 36 35 14 11 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCGTCTTACTGAAAAGAACACA</pcr_primer_p1>
		<pcr_primer_p2>GCTCAAACCACTTATCACTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCGTCTTACTGAAAAGAACACAAAAAAATGTTTCGAAATATCCGACGGGGCTGGGTTATGGAGTGTGCACGGGTGTGGTCTGGCGGGGTGGGTGCAGAAAACCGAAAGATTTCGTCATTATTGACTGCCGTTTTTCATTAAACGAGGTAAATTACCTTTGTGTGACGCTCTCTTTGCATGCACTCGACTTGACGACATTTTGCGGACTTGGCCTGTGAGAAGAAAATTTAGTGATAAGTGGTTTGAGC</canonical_amplicon>
		<polymorphic_amplicon>GTCGTCTTACTGAAAAGAACACAAAAAAATGTTTCGAAATATCCGACGGGGCTGGGTTATGGAGTGTGCACGGGTGTGGTCTGGCGGGGTGGGTGCAGAAAACCGAAAGATTTCGTCATTATTGACTGCCGTTTTTCATTAAACGAGGTAARTTACCTTTGTGTGACGCTCTCTTTGCATGCACTCGACTTGACGACATTTTGCGGACTTGGCCTGTGAGAAGAAAATTTAGTGATAAGTGGTTTGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1814</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>231962</contig_pos>
        <strand>+</strand>
        <context>ATTCTTTGAA[C/T]TTTTCTATGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGAGCGATGAGTGATTGACAAAAAATTTGGATGAAAAAATTCTTTGAA</left_flank>
        <right_flank>TTTTCTATGCTAGATTCTGGTGATTGGACACTTTGAAACTTTCAAAACTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCATATTATCGTCATTTGACGAATCTTGTACGGGCGGATGTATTTCACTAAGGTTGAGCTTTGCTAAATTGTGGCGATTCCTGGGCGGAGCAAAGGTCTGAAATTGTTTTGAAATATCGTCCCACTATTCAACGTTTCATTAACAAATCTTACATAAGTTTGCCCATTTCCGTCCGGCATCGCCGGAGGCAGTTGTCGTTTTCGGGTCGTCTTACTGAAAAGAACACAAAAAAATGTTTCGAAATATCCGACGGGGCTGGGTTATGGAGTGTGCACGGGTGTGGTCTGGCGGGGTGGGTGCAGAAAACCGAAAGATTTCGTCATTATTGACTGCCGTTTTTCATTAAACGAGGTAAATTACCTTTGTGTGACGCTCTCTTTGCATGCACTCGACTTGACGACATTTTGCGGACTTGGCCTGTGAGAAGAAAATTTAGTGATAAGTGGTTTGAGCGATGAGTGATTGACAAAAAATTTGGATGAAAAAATTCTTTGAACTTTTCTATGCTAGATTCTGGTGATTGGACACTTTGAAACTTTCAAAACTTAGGTGATGAGCAAGAGAACAGAAAATCGATATTGTTCGGCCTGACCTCCGGACCGTTTGCGCACAATGCGCACAATGCCAATGAGACCCCCCAAACGGACTTCCTCGCACACACACACACAGTCTGATGAGACACCACGCTGACTAACAAGACAAGGGTCATGACGACTGATGTAATAAAATTTGCATCTATTCCTCATTCCTCATTTTTTTCAAAATTTTGAATTTTCAAAAAAGAAACTCCACAAAAAAACAATAACCTACTTTCTCTTTCTTCGCTCCATGACTTTGGAAAACAAAACGAAACAAAATGAGTGAAAAATGAGTAGGGTAATTCAACTGTTTCACCTAGCCCATGACTAACCTTGAAAAAACTCTTTTCTCCTGCATTTACCAACCGACGAGAGAGGGAAAACGAGAACAAACAAAAAGATGCTGGGTGAGGAGACAC</canonical>
            <polymorphic>ATTCATATTATCGTCATTTGACGAATCTTGTACGGGCGGATGTATTTCACTAAGGTTGAGCTTTGCTAAATTGTGGCGATTCCTGGGCGGAGCAAAGGTCTGAAATTGTTTTGAAATATCGTCCCACTATTCAACGTTTCATTAACAAATCTTACATAAGTTTGCCCATTTCCGTCCGGCATCGCCGGAGGCAGTTGTCGTTTTCGGGTCGTCTTACTGAAAAGAACACAAAAAAATGTTTCGAAATATCCGACGGGGCTGGGTTATGGAGTGTGCACGGGTGTGGTCTGGCGGGGTGGGTGCAGAAAACCGAAAGATTTCGTCATTATTGACTGCCGTTTTTCATTAAACGAGGTAAATTACCTTTGTGTGACGCTCTCTTTGCATGCACTCGACTTGACGACATTTTGCGGACTTGGCCTGTGAGAAGAAAATTTAGTGATAAGTGGTTTGAGCGATGAGTGATTGACAAAAAATTTGGATGAAAAAATTCTTTGAAYTTTTCTATGCTAGATTCTGGTGATTGGACACTTTGAAACTTTCAAAACTTAGGTGATGAGCAAGAGAACAGAAAATCGATATTGTTCGGCCTGACCTCCGGACCGTTTGCGCACAATGCGCACAATGCCAATGAGACCCCCCAAACGGACTTCCTCGCACACACACACACAGTCTGATGAGACACCACGCTGACTAACAAGACAAGGGTCATGACGACTGATGTAATAAAATTTGCATCTATTCCTCATTCCTCATTTTTTTCAAAATTTTGAATTTTCAAAAAAGAAACTCCACAAAAAAACAATAACCTACTTTCTCTTTCTTCGCTCCATGACTTTGGAAAACAAAACGAAACAAAATGAGTGAAAAATGAGTAGGGTAATTCAACTGTTTCACCTAGCCCATGACTAACCTTGAAAAAACTCTTTTCTCCTGCATTTACCAACCGACGAGAGAGGGAAAACGAGAACAAACAAAAAGATGCTGGGTGAGGAGACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAATTTAGTGATAAGTGGTTTG</pcr_primer_p1>
		<pcr_primer_p2>ATCAGACTGTGTGTGTGTGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAAATTTAGTGATAAGTGGTTTGAGCGATGAGTGATTGACAAAAAATTTGGATGAAAAAATTCTTTGAACTTTTCTATGCTAGATTCTGGTGATTGGACACTTTGAAACTTTCAAAACTTAGGTGATGAGCAAGAGAACAGAAAATCGATATTGTTCGGCCTGACCTCCGGACCGTTTGCGCACAATGCGCACAATGCCAATGAGACCCCCCAAACGGACTTCCTCGCACACACACACACAGTCTGAT</canonical_amplicon>
		<polymorphic_amplicon>AGAAAATTTAGTGATAAGTGGTTTGAGCGATGAGTGATTGACAAAAAATTTGGATGAAAAAATTCTTTGAAYTTTTCTATGCTAGATTCTGGTGATTGGACACTTTGAAACTTTCAAAACTTAGGTGATGAGCAAGAGAACAGAAAATCGATATTGTTCGGCCTGACCTCCGGACCGTTTGCGCACAATGCGCACAATGCCAATGAGACCCCCCAAACGGACTTCCTCGCACACACACACACAGTCTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1815</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>232061</contig_pos>
        <strand>+</strand>
        <context>GCCTGACCTC[C/T]GGACCGTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAGGTGATGAGCAAGAGAACAGAAAATCGATATTGTTCGGCCTGACCTC</left_flank>
        <right_flank>GGACCGTTTGCGCACAATGCGCACAATGCCAATGAGACCCCCCAAACGGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAAATTGTTTTGAAATATCGTCCCACTATTCAACGTTTCATTAACAAATCTTACATAAGTTTGCCCATTTCCGTCCGGCATCGCCGGAGGCAGTTGTCGTTTTCGGGTCGTCTTACTGAAAAGAACACAAAAAAATGTTTCGAAATATCCGACGGGGCTGGGTTATGGAGTGTGCACGGGTGTGGTCTGGCGGGGTGGGTGCAGAAAACCGAAAGATTTCGTCATTATTGACTGCCGTTTTTCATTAAACGAGGTAAATTACCTTTGTGTGACGCTCTCTTTGCATGCACTCGACTTGACGACATTTTGCGGACTTGGCCTGTGAGAAGAAAATTTAGTGATAAGTGGTTTGAGCGATGAGTGATTGACAAAAAATTTGGATGAAAAAATTCTTTGAACTTTTCTATGCTAGATTCTGGTGATTGGACACTTTGAAACTTTCAAAACTTAGGTGATGAGCAAGAGAACAGAAAATCGATATTGTTCGGCCTGACCTCCGGACCGTTTGCGCACAATGCGCACAATGCCAATGAGACCCCCCAAACGGACTTCCTCGCACACACACACACAGTCTGATGAGACACCACGCTGACTAACAAGACAAGGGTCATGACGACTGATGTAATAAAATTTGCATCTATTCCTCATTCCTCATTTTTTTCAAAATTTTGAATTTTCAAAAAAGAAACTCCACAAAAAAACAATAACCTACTTTCTCTTTCTTCGCTCCATGACTTTGGAAAACAAAACGAAACAAAATGAGTGAAAAATGAGTAGGGTAATTCAACTGTTTCACCTAGCCCATGACTAACCTTGAAAAAACTCTTTTCTCCTGCATTTACCAACCGACGAGAGAGGGAAAACGAGAACAAACAAAAAGATGCTGGGTGAGGAGACACATGAGACTTGGAGGGAATTGTTCGACTGGAAAATTAGAAAAAAAATGAATATGTAAGAATTTTTATTTCAATTAATTATTTATTACAGCTTATGTGTGC</canonical>
            <polymorphic>CTGAAATTGTTTTGAAATATCGTCCCACTATTCAACGTTTCATTAACAAATCTTACATAAGTTTGCCCATTTCCGTCCGGCATCGCCGGAGGCAGTTGTCGTTTTCGGGTCGTCTTACTGAAAAGAACACAAAAAAATGTTTCGAAATATCCGACGGGGCTGGGTTATGGAGTGTGCACGGGTGTGGTCTGGCGGGGTGGGTGCAGAAAACCGAAAGATTTCGTCATTATTGACTGCCGTTTTTCATTAAACGAGGTAAATTACCTTTGTGTGACGCTCTCTTTGCATGCACTCGACTTGACGACATTTTGCGGACTTGGCCTGTGAGAAGAAAATTTAGTGATAAGTGGTTTGAGCGATGAGTGATTGACAAAAAATTTGGATGAAAAAATTCTTTGAACTTTTCTATGCTAGATTCTGGTGATTGGACACTTTGAAACTTTCAAAACTTAGGTGATGAGCAAGAGAACAGAAAATCGATATTGTTCGGCCTGACCTCYGGACCGTTTGCGCACAATGCGCACAATGCCAATGAGACCCCCCAAACGGACTTCCTCGCACACACACACACAGTCTGATGAGACACCACGCTGACTAACAAGACAAGGGTCATGACGACTGATGTAATAAAATTTGCATCTATTCCTCATTCCTCATTTTTTTCAAAATTTTGAATTTTCAAAAAAGAAACTCCACAAAAAAACAATAACCTACTTTCTCTTTCTTCGCTCCATGACTTTGGAAAACAAAACGAAACAAAATGAGTGAAAAATGAGTAGGGTAATTCAACTGTTTCACCTAGCCCATGACTAACCTTGAAAAAACTCTTTTCTCCTGCATTTACCAACCGACGAGAGAGGGAAAACGAGAACAAACAAAAAGATGCTGGGTGAGGAGACACATGAGACTTGGAGGGAATTGTTCGACTGGAAAATTAGAAAAAAAATGAATATGTAAGAATTTTTATTTCAATTAATTATTTATTACAGCTTATGTGTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCCGGA</site>
                <isoschizomers>
                    <enzyme>AccIII</enzyme>
                    <enzyme>BseAI</enzyme>
                    <enzyme>BsiMI</enzyme>
                    <enzyme>Bsp13I</enzyme>
                    <enzyme>BspEI</enzyme>
                    <enzyme>BspMII</enzyme>
                    <enzyme>Kpn2I</enzyme>
                    <enzyme>MroI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 413 77 9</canonical_bands>
                <polymorphic_bands>914 77 9</polymorphic_bands>
            </assay>
            <assay>
                <site>CGGWCCG</site>
                <isoschizomers>
                    <enzyme>CpoI</enzyme>
                    <enzyme>CspI</enzyme>
                    <enzyme>Rsr2I</enzyme>
                    <enzyme>RsrII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTATGCTAGATTCTGGTGAT</pcr_primer_p1>
		<pcr_primer_p2>ATGAGGAATAGATGCAAATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTCTATGCTAGATTCTGGTGATTGGACACTTTGAAACTTTCAAAACTTAGGTGATGAGCAAGAGAACAGAAAATCGATATTGTTCGGCCTGACCTCCGGACCGTTTGCGCACAATGCGCACAATGCCAATGAGACCCCCCAAACGGACTTCCTCGCACACACACACACAGTCTGATGAGACACCACGCTGACTAACAAGACAAGGGTCATGACGACTGATGTAATAAAATTTGCATCTATTCCTCAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTATGCTAGATTCTGGTGATTGGACACTTTGAAACTTTCAAAACTTAGGTGATGAGCAAGAGAACAGAAAATCGATATTGTTCGGCCTGACCTCYGGACCGTTTGCGCACAATGCGCACAATGCCAATGAGACCCCCCAAACGGACTTCCTCGCACACACACACACAGTCTGATGAGACACCACGCTGACTAACAAGACAAGGGTCATGACGACTGATGTAATAAAATTTGCATCTATTCCTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1816</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>232095</contig_pos>
        <strand>+</strand>
        <context>CAATGCCAAT[G/T]AGACCCCCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTTCGGCCTGACCTCCGGACCGTTTGCGCACAATGCGCACAATGCCAAT</left_flank>
        <right_flank>AGACCCCCCAAACGGACTTCCTCGCACACACACACACAGTCTGATGAGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGTTTCATTAACAAATCTTACATAAGTTTGCCCATTTCCGTCCGGCATCGCCGGAGGCAGTTGTCGTTTTCGGGTCGTCTTACTGAAAAGAACACAAAAAAATGTTTCGAAATATCCGACGGGGCTGGGTTATGGAGTGTGCACGGGTGTGGTCTGGCGGGGTGGGTGCAGAAAACCGAAAGATTTCGTCATTATTGACTGCCGTTTTTCATTAAACGAGGTAAATTACCTTTGTGTGACGCTCTCTTTGCATGCACTCGACTTGACGACATTTTGCGGACTTGGCCTGTGAGAAGAAAATTTAGTGATAAGTGGTTTGAGCGATGAGTGATTGACAAAAAATTTGGATGAAAAAATTCTTTGAACTTTTCTATGCTAGATTCTGGTGATTGGACACTTTGAAACTTTCAAAACTTAGGTGATGAGCAAGAGAACAGAAAATCGATATTGTTCGGCCTGACCTCCGGACCGTTTGCGCACAATGCGCACAATGCCAATGAGACCCCCCAAACGGACTTCCTCGCACACACACACACAGTCTGATGAGACACCACGCTGACTAACAAGACAAGGGTCATGACGACTGATGTAATAAAATTTGCATCTATTCCTCATTCCTCATTTTTTTCAAAATTTTGAATTTTCAAAAAAGAAACTCCACAAAAAAACAATAACCTACTTTCTCTTTCTTCGCTCCATGACTTTGGAAAACAAAACGAAACAAAATGAGTGAAAAATGAGTAGGGTAATTCAACTGTTTCACCTAGCCCATGACTAACCTTGAAAAAACTCTTTTCTCCTGCATTTACCAACCGACGAGAGAGGGAAAACGAGAACAAACAAAAAGATGCTGGGTGAGGAGACACATGAGACTTGGAGGGAATTGTTCGACTGGAAAATTAGAAAAAAAATGAATATGTAAGAATTTTTATTTCAATTAATTATTTATTACAGCTTATGTGTGCTCAAGTACAGACAAATTGTTTTGAATGGGACCAA</canonical>
            <polymorphic>ACGTTTCATTAACAAATCTTACATAAGTTTGCCCATTTCCGTCCGGCATCGCCGGAGGCAGTTGTCGTTTTCGGGTCGTCTTACTGAAAAGAACACAAAAAAATGTTTCGAAATATCCGACGGGGCTGGGTTATGGAGTGTGCACGGGTGTGGTCTGGCGGGGTGGGTGCAGAAAACCGAAAGATTTCGTCATTATTGACTGCCGTTTTTCATTAAACGAGGTAAATTACCTTTGTGTGACGCTCTCTTTGCATGCACTCGACTTGACGACATTTTGCGGACTTGGCCTGTGAGAAGAAAATTTAGTGATAAGTGGTTTGAGCGATGAGTGATTGACAAAAAATTTGGATGAAAAAATTCTTTGAACTTTTCTATGCTAGATTCTGGTGATTGGACACTTTGAAACTTTCAAAACTTAGGTGATGAGCAAGAGAACAGAAAATCGATATTGTTCGGCCTGACCTCCGGACCGTTTGCGCACAATGCGCACAATGCCAATKAGACCCCCCAAACGGACTTCCTCGCACACACACACACAGTCTGATGAGACACCACGCTGACTAACAAGACAAGGGTCATGACGACTGATGTAATAAAATTTGCATCTATTCCTCATTCCTCATTTTTTTCAAAATTTTGAATTTTCAAAAAAGAAACTCCACAAAAAAACAATAACCTACTTTCTCTTTCTTCGCTCCATGACTTTGGAAAACAAAACGAAACAAAATGAGTGAAAAATGAGTAGGGTAATTCAACTGTTTCACCTAGCCCATGACTAACCTTGAAAAAACTCTTTTCTCCTGCATTTACCAACCGACGAGAGAGGGAAAACGAGAACAAACAAAAAGATGCTGGGTGAGGAGACACATGAGACTTGGAGGGAATTGTTCGACTGGAAAATTAGAAAAAAAATGAATATGTAAGAATTTTTATTTCAATTAATTATTTATTACAGCTTATGTGTGCTCAAGTACAGACAAATTGTTTTGAATGGGACCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTATGCTAGATTCTGGTGAT</pcr_primer_p1>
		<pcr_primer_p2>ATGAGGAATAGATGCAAATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTCTATGCTAGATTCTGGTGATTGGACACTTTGAAACTTTCAAAACTTAGGTGATGAGCAAGAGAACAGAAAATCGATATTGTTCGGCCTGACCTCCGGACCGTTTGCGCACAATGCGCACAATGCCAATGAGACCCCCCAAACGGACTTCCTCGCACACACACACACAGTCTGATGAGACACCACGCTGACTAACAAGACAAGGGTCATGACGACTGATGTAATAAAATTTGCATCTATTCCTCAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTATGCTAGATTCTGGTGATTGGACACTTTGAAACTTTCAAAACTTAGGTGATGAGCAAGAGAACAGAAAATCGATATTGTTCGGCCTGACCTCCGGACCGTTTGCGCACAATGCGCACAATGCCAATKAGACCCCCCAAACGGACTTCCTCGCACACACACACACAGTCTGATGAGACACCACGCTGACTAACAAGACAAGGGTCATGACGACTGATGTAATAAAATTTGCATCTATTCCTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1817</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>260206</contig_pos>
        <strand>+</strand>
        <context>TCTTTCAAGC[A/T]CATTTTCACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTAGAGACTGTTGACCTTCTCGTCATAGTCTCTCTTCTCTCTTTCAAGC</left_flank>
        <right_flank>CATTTTCACGGTTGAGAGAGTCAGCCAACTGCTTCTCCAAATTGTTAAGC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCACGAAGTGCAGCATCCAAGTCTCCTCTCCATTTGTTGGAATCACTCTGGAGAGTGCTGTATTGATCCTCCAAAGAACGAAGACGATTTTGGGCACTCTCAAGGTCCATCTCCTTTTGGACAAGGTTGCCCTTGCTATCGGAGAGTTCGTCCTCCAAGCGGCGAATTTGTGAAGTCACTGAAAGAATTTTTTAAACGATGATCATACAATTTGAAAAACAAAAAACTTACAGTCGCGGACTTTAGCGGTGTGATCATTGACTGTCTTAGTCAAATGATCAATTCTGTCTTGAGCAGCTTGCAGTTGCGCCTTCAAAGCAGTGTTAGTGGTCTCAAGAGCCTTGGCTTCAGAACGGACGGTGTATGCATCAGTCTTCCATTTCTGGATTTCCTTATCAGCATCATTGCGGAAATCATCCCACTCATCCTTGATCTTCTGGTTCTGAGTGTAGAGACTGTTGACCTTCTCGTCATAGTCTCTCTTCTCTCTTTCAAGCACATTTTCACGGTTGAGAGAGTCAGCCAACTGCTTCTCCAAATTGTTAAGCTTGTCACGGAGATCATCTTCGACCGACTTCAAATTCTCAACAGCCTTTCCATACTGCTCCTTCTCATCATCCAAATCACTGAGATGCTTATCGTGAAGAGCACTGATGTCACTCTTGAGCTTGTCTATTTCAGCAGCATGTTTTCTCTTCAGCTCAGTGATGTCATTCTCAGTCTTGTCGTTTCCGCGACCAATCTGAGAAAGCTCATCTTCAAGCTCGCGGATTCTGCGCTCCAAATCGTCTTTGTCGTTCTCGAGACGCTCCAACTCTCTCTTCCAACGATCATTGATCTCACGAATCTTGTGCTCCGCGAGCTCATCATCATGATAACGATCGAGAATGTTCTTTTCAATTCTCTCGATTCTTTCCTTGGTGTTGGTGATAGTGTGAGTTCCACGTTGTCCAGTAGCATCTCTTCCATCACGTCCATCACGACCATGAATAACATCT</canonical>
            <polymorphic>TTTCACGAAGTGCAGCATCCAAGTCTCCTCTCCATTTGTTGGAATCACTCTGGAGAGTGCTGTATTGATCCTCCAAAGAACGAAGACGATTTTGGGCACTCTCAAGGTCCATCTCCTTTTGGACAAGGTTGCCCTTGCTATCGGAGAGTTCGTCCTCCAAGCGGCGAATTTGTGAAGTCACTGAAAGAATTTTTTAAACGATGATCATACAATTTGAAAAACAAAAAACTTACAGTCGCGGACTTTAGCGGTGTGATCATTGACTGTCTTAGTCAAATGATCAATTCTGTCTTGAGCAGCTTGCAGTTGCGCCTTCAAAGCAGTGTTAGTGGTCTCAAGAGCCTTGGCTTCAGAACGGACGGTGTATGCATCAGTCTTCCATTTCTGGATTTCCTTATCAGCATCATTGCGGAAATCATCCCACTCATCCTTGATCTTCTGGTTCTGAGTGTAGAGACTGTTGACCTTCTCGTCATAGTCTCTCTTCTCTCTTTCAAGCWCATTTTCACGGTTGAGAGAGTCAGCCAACTGCTTCTCCAAATTGTTAAGCTTGTCACGGAGATCATCTTCGACCGACTTCAAATTCTCAACAGCCTTTCCATACTGCTCCTTCTCATCATCCAAATCACTGAGATGCTTATCGTGAAGAGCACTGATGTCACTCTTGAGCTTGTCTATTTCAGCAGCATGTTTTCTCTTCAGCTCAGTGATGTCATTCTCAGTCTTGTCGTTTCCGCGACCAATCTGAGAAAGCTCATCTTCAAGCTCGCGGATTCTGCGCTCCAAATCGTCTTTGTCGTTCTCGAGACGCTCCAACTCTCTCTTCCAACGATCATTGATCTCACGAATCTTGTGCTCCGCGAGCTCATCATCATGATAACGATCGAGAATGTTCTTTTCAATTCTCTCGATTCTTTCCTTGGTGTTGGTGATAGTGTGAGTTCCACGTTGTCCAGTAGCATCTCTTCCATCACGTCCATCACGACCATGAATAACATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>135 76 73 72 70 70 59 49 48 48 39 35 33 28 27 18 17 12 11 9 9 8 7 7 7 6 6 6 6 5 2 2</canonical_bands>
                <polymorphic_bands>135 76 73 72 70 70 59 57 48 48 39 35 33 28 27 18 17 12 11 9 9 7 7 7 6 6 6 6 5 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCTTCTGGTTCTGAGTGTAGA</pcr_primer_p1>
		<pcr_primer_p2>GAAATAGACAAGCTCAAGAGTGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATCTTCTGGTTCTGAGTGTAGAGACTGTTGACCTTCTCGTCATAGTCTCTCTTCTCTCTTTCAAGCACATTTTCACGGTTGAGAGAGTCAGCCAACTGCTTCTCCAAATTGTTAAGCTTGTCACGGAGATCATCTTCGACCGACTTCAAATTCTCAACAGCCTTTCCATACTGCTCCTTCTCATCATCCAAATCACTGAGATGCTTATCGTGAAGAGCACTGATGTCACTCTTGAGCTTGTCTATTTC</canonical_amplicon>
		<polymorphic_amplicon>GATCTTCTGGTTCTGAGTGTAGAGACTGTTGACCTTCTCGTCATAGTCTCTCTTCTCTCTTTCAAGCWCATTTTCACGGTTGAGAGAGTCAGCCAACTGCTTCTCCAAATTGTTAAGCTTGTCACGGAGATCATCTTCGACCGACTTCAAATTCTCAACAGCCTTTCCATACTGCTCCTTCTCATCATCCAAATCACTGAGATGCTTATCGTGAAGAGCACTGATGTCACTCTTGAGCTTGTCTATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1818</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>333737</contig_pos>
        <strand>+</strand>
        <context>TCTTTAGTAG[A/C]TGCCAGAGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACGTCAGGTGTTCACTAACCTTTGCGTTTTCTTGATAGCTTCTTTAGTAG</left_flank>
        <right_flank>TGCCAGAGAGGCCTTCAGCTTGTGAGATTTTTTCAACTCAATTTGATATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTGTTTTGGGAAAACGGGAATTAACTGAATGAGAATAAAGCCGATAGCTTGACACGTGGGTCGACAAAAATACACAGATAACATGAAATGAGTGGAAAATTATGCAATTAATGTTTGTGGAGTGGATGTTCCTGTCGATGAGCATCCCAGATCGAATGAGGTTTCAGAAAGCTCCGAGTTCTCATCGCCCATATCTTCGGTCTTGAATTCGGCCAACTTTTTCAACAACTCTCTCTCACTCTCCTCAACACGTTTGATGTCACTGAAAAAATAGAATAATCAGTTAATCTGATAAAAAGTACAAAACAAAAGTAGTGAAGTTTTGCAAATCTTTGGAAAACTTGAATTAGGAAGACGTGACGCCCTTGATAACCAAATAGTAAAAAGAGGTAATCAGCCGAAATCAGCCGAACACTGCCACTACAGTAGTCACGTCTTCTGGGGACTACGTCAGGTGTTCACTAACCTTTGCGTTTTCTTGATAGCTTCTTTAGTAGATGCCAGAGAGGCCTTCAGCTTGTGAGATTTTTTCAACTCAATTTGATATTGTTGTGGCCAGTTAGCAGCAATCATTGGCTTCAGAATAGCACGGAGATTTTTCTAAACAAGAATGTGGGTTATCAGATTACGGTAGTTGGTTGGTCACCTGTTGCTTGAGAAGCTGGCGGAGCTCCTCCTCCTGAACAAGGTAGTCGGCGATTTCTTGTGGAGTCATTGTCTCGGCAAGCTTATTCACATCGGCTCTGAAATTAATAATAGAACAAATCTTCTGGAAAAAATGAGAAACTTGCCTTTGAAAGTCATCAAAATCATCATTCTGTGGAAACGTAGCAGCGCCCAACATGATTTTCTTGTTCTCCATCACTGACATGTAGTCTGAATTGAAAAATAATCGTAAAATATACGAATAAATACTAGGAAGAGGGAGGTATGAAAAAAGTGAACTATCCGGTCATGTCTTGTGCGTGATTTTCTGTATGTCAAACAGGGCGGTCAAT</canonical>
            <polymorphic>TTGTGTTTTGGGAAAACGGGAATTAACTGAATGAGAATAAAGCCGATAGCTTGACACGTGGGTCGACAAAAATACACAGATAACATGAAATGAGTGGAAAATTATGCAATTAATGTTTGTGGAGTGGATGTTCCTGTCGATGAGCATCCCAGATCGAATGAGGTTTCAGAAAGCTCCGAGTTCTCATCGCCCATATCTTCGGTCTTGAATTCGGCCAACTTTTTCAACAACTCTCTCTCACTCTCCTCAACACGTTTGATGTCACTGAAAAAATAGAATAATCAGTTAATCTGATAAAAAGTACAAAACAAAAGTAGTGAAGTTTTGCAAATCTTTGGAAAACTTGAATTAGGAAGACGTGACGCCCTTGATAACCAAATAGTAAAAAGAGGTAATCAGCCGAAATCAGCCGAACACTGCCACTACAGTAGTCACGTCTTCTGGGGACTACGTCAGGTGTTCACTAACCTTTGCGTTTTCTTGATAGCTTCTTTAGTAGMTGCCAGAGAGGCCTTCAGCTTGTGAGATTTTTTCAACTCAATTTGATATTGTTGTGGCCAGTTAGCAGCAATCATTGGCTTCAGAATAGCACGGAGATTTTTCTAAACAAGAATGTGGGTTATCAGATTACGGTAGTTGGTTGGTCACCTGTTGCTTGAGAAGCTGGCGGAGCTCCTCCTCCTGAACAAGGTAGTCGGCGATTTCTTGTGGAGTCATTGTCTCGGCAAGCTTATTCACATCGGCTCTGAAATTAATAATAGAACAAATCTTCTGGAAAAAATGAGAAACTTGCCTTTGAAAGTCATCAAAATCATCATTCTGTGGAAACGTAGCAGCGCCCAACATGATTTTCTTGTTCTCCATCACTGACATGTAGTCTGAATTGAAAAATAATCGTAAAATATACGAATAAATACTAGGAAGAGGGAGGTATGAAAAAAGTGAACTATCCGGTCATGTCTTGTGCGTGATTTTCTGTATGTCAAACAGGGCGGTCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAATAGTAAAAAGAGGTAATCAG</pcr_primer_p1>
		<pcr_primer_p2>GATAACCCACATTCTTGTTTAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAAATAGTAAAAAGAGGTAATCAGCCGAAATCAGCCGAACACTGCCACTACAGTAGTCACGTCTTCTGGGGACTACGTCAGGTGTTCACTAACCTTTGCGTTTTCTTGATAGCTTCTTTAGTAGATGCCAGAGAGGCCTTCAGCTTGTGAGATTTTTTCAACTCAATTTGATATTGTTGTGGCCAGTTAGCAGCAATCATTGGCTTCAGAATAGCACGGAGATTTTTCTAAACAAGAATGTGGGTTATC</canonical_amplicon>
		<polymorphic_amplicon>CCAAATAGTAAAAAGAGGTAATCAGCCGAAATCAGCCGAACACTGCCACTACAGTAGTCACGTCTTCTGGGGACTACGTCAGGTGTTCACTAACCTTTGCGTTTTCTTGATAGCTTCTTTAGTAGMTGCCAGAGAGGCCTTCAGCTTGTGAGATTTTTTCAACTCAATTTGATATTGTTGTGGCCAGTTAGCAGCAATCATTGGCTTCAGAATAGCACGGAGATTTTTCTAAACAAGAATGTGGGTTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1819</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>333819</contig_pos>
        <strand>+</strand>
        <context>TCATTGGCTT[C/G]AGAATAGCAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCAACTCAATTTGATATTGTTGTGGCCAGTTAGCAGCAATCATTGGCTT</left_flank>
        <right_flank>AGAATAGCACGGAGATTTTTCTAAACAAGAATGTGGGTTATCAGATTACG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATGAAATGAGTGGAAAATTATGCAATTAATGTTTGTGGAGTGGATGTTCCTGTCGATGAGCATCCCAGATCGAATGAGGTTTCAGAAAGCTCCGAGTTCTCATCGCCCATATCTTCGGTCTTGAATTCGGCCAACTTTTTCAACAACTCTCTCTCACTCTCCTCAACACGTTTGATGTCACTGAAAAAATAGAATAATCAGTTAATCTGATAAAAAGTACAAAACAAAAGTAGTGAAGTTTTGCAAATCTTTGGAAAACTTGAATTAGGAAGACGTGACGCCCTTGATAACCAAATAGTAAAAAGAGGTAATCAGCCGAAATCAGCCGAACACTGCCACTACAGTAGTCACGTCTTCTGGGGACTACGTCAGGTGTTCACTAACCTTTGCGTTTTCTTGATAGCTTCTTTAGTAGATGCCAGAGAGGCCTTCAGCTTGTGAGATTTTTTCAACTCAATTTGATATTGTTGTGGCCAGTTAGCAGCAATCATTGGCTTCAGAATAGCACGGAGATTTTTCTAAACAAGAATGTGGGTTATCAGATTACGGTAGTTGGTTGGTCACCTGTTGCTTGAGAAGCTGGCGGAGCTCCTCCTCCTGAACAAGGTAGTCGGCGATTTCTTGTGGAGTCATTGTCTCGGCAAGCTTATTCACATCGGCTCTGAAATTAATAATAGAACAAATCTTCTGGAAAAAATGAGAAACTTGCCTTTGAAAGTCATCAAAATCATCATTCTGTGGAAACGTAGCAGCGCCCAACATGATTTTCTTGTTCTCCATCACTGACATGTAGTCTGAATTGAAAAATAATCGTAAAATATACGAATAAATACTAGGAAGAGGGAGGTATGAAAAAAGTGAACTATCCGGTCATGTCTTGTGCGTGATTTTCTGTATGTCAAACAGGGCGGTCAATTCTGATATCTATTCATGTTTCAGAAAAAAATATCTTGTGGTGGTGGTCTCTGATTGATATATACCGGTATATTGTTGAAAAT</canonical>
            <polymorphic>ACATGAAATGAGTGGAAAATTATGCAATTAATGTTTGTGGAGTGGATGTTCCTGTCGATGAGCATCCCAGATCGAATGAGGTTTCAGAAAGCTCCGAGTTCTCATCGCCCATATCTTCGGTCTTGAATTCGGCCAACTTTTTCAACAACTCTCTCTCACTCTCCTCAACACGTTTGATGTCACTGAAAAAATAGAATAATCAGTTAATCTGATAAAAAGTACAAAACAAAAGTAGTGAAGTTTTGCAAATCTTTGGAAAACTTGAATTAGGAAGACGTGACGCCCTTGATAACCAAATAGTAAAAAGAGGTAATCAGCCGAAATCAGCCGAACACTGCCACTACAGTAGTCACGTCTTCTGGGGACTACGTCAGGTGTTCACTAACCTTTGCGTTTTCTTGATAGCTTCTTTAGTAGATGCCAGAGAGGCCTTCAGCTTGTGAGATTTTTTCAACTCAATTTGATATTGTTGTGGCCAGTTAGCAGCAATCATTGGCTTSAGAATAGCACGGAGATTTTTCTAAACAAGAATGTGGGTTATCAGATTACGGTAGTTGGTTGGTCACCTGTTGCTTGAGAAGCTGGCGGAGCTCCTCCTCCTGAACAAGGTAGTCGGCGATTTCTTGTGGAGTCATTGTCTCGGCAAGCTTATTCACATCGGCTCTGAAATTAATAATAGAACAAATCTTCTGGAAAAAATGAGAAACTTGCCTTTGAAAGTCATCAAAATCATCATTCTGTGGAAACGTAGCAGCGCCCAACATGATTTTCTTGTTCTCCATCACTGACATGTAGTCTGAATTGAAAAATAATCGTAAAATATACGAATAAATACTAGGAAGAGGGAGGTATGAAAAAAGTGAACTATCCGGTCATGTCTTGTGCGTGATTTTCTGTATGTCAAACAGGGCGGTCAATTCTGATATCTATTCATGTTTCAGAAAAAAATATCTTGTGGTGGTGGTCTCTGATTGATATATACCGGTATATTGTTGAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>291 133 123 122 115 86 42 31 29 19 9</canonical_bands>
                <polymorphic_bands>333 133 123 122 115 86 31 29 19 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTCAGCTTGTGAGATTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTATTAATTTCAGAGCCGATGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCTTCAGCTTGTGAGATTTTTTCAACTCAATTTGATATTGTTGTGGCCAGTTAGCAGCAATCATTGGCTTCAGAATAGCACGGAGATTTTTCTAAACAAGAATGTGGGTTATCAGATTACGGTAGTTGGTTGGTCACCTGTTGCTTGAGAAGCTGGCGGAGCTCCTCCTCCTGAACAAGGTAGTCGGCGATTTCTTGTGGAGTCATTGTCTCGGCAAGCTTATTCACATCGGCTCTGAAATTAATAAT</canonical_amplicon>
		<polymorphic_amplicon>CCTTCAGCTTGTGAGATTTTTTCAACTCAATTTGATATTGTTGTGGCCAGTTAGCAGCAATCATTGGCTTSAGAATAGCACGGAGATTTTTCTAAACAAGAATGTGGGTTATCAGATTACGGTAGTTGGTTGGTCACCTGTTGCTTGAGAAGCTGGCGGAGCTCCTCCTCCTGAACAAGGTAGTCGGCGATTTCTTGTGGAGTCATTGTCTCGGCAAGCTTATTCACATCGGCTCTGAAATTAATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1820</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>333907</contig_pos>
        <strand>+</strand>
        <context>GAAGCTGGCG[A/G]AGCTCCTCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATCAGATTACGGTAGTTGGTTGGTCACCTGTTGCTTGAGAAGCTGGCG</left_flank>
        <right_flank>AGCTCCTCCTCCTGAACAAGGTAGTCGGCGATTTCTTGTGGAGTCATTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCTCCGAGTTCTCATCGCCCATATCTTCGGTCTTGAATTCGGCCAACTTTTTCAACAACTCTCTCTCACTCTCCTCAACACGTTTGATGTCACTGAAAAAATAGAATAATCAGTTAATCTGATAAAAAGTACAAAACAAAAGTAGTGAAGTTTTGCAAATCTTTGGAAAACTTGAATTAGGAAGACGTGACGCCCTTGATAACCAAATAGTAAAAAGAGGTAATCAGCCGAAATCAGCCGAACACTGCCACTACAGTAGTCACGTCTTCTGGGGACTACGTCAGGTGTTCACTAACCTTTGCGTTTTCTTGATAGCTTCTTTAGTAGATGCCAGAGAGGCCTTCAGCTTGTGAGATTTTTTCAACTCAATTTGATATTGTTGTGGCCAGTTAGCAGCAATCATTGGCTTCAGAATAGCACGGAGATTTTTCTAAACAAGAATGTGGGTTATCAGATTACGGTAGTTGGTTGGTCACCTGTTGCTTGAGAAGCTGGCGGAGCTCCTCCTCCTGAACAAGGTAGTCGGCGATTTCTTGTGGAGTCATTGTCTCGGCAAGCTTATTCACATCGGCTCTGAAATTAATAATAGAACAAATCTTCTGGAAAAAATGAGAAACTTGCCTTTGAAAGTCATCAAAATCATCATTCTGTGGAAACGTAGCAGCGCCCAACATGATTTTCTTGTTCTCCATCACTGACATGTAGTCTGAATTGAAAAATAATCGTAAAATATACGAATAAATACTAGGAAGAGGGAGGTATGAAAAAAGTGAACTATCCGGTCATGTCTTGTGCGTGATTTTCTGTATGTCAAACAGGGCGGTCAATTCTGATATCTATTCATGTTTCAGAAAAAAATATCTTGTGGTGGTGGTCTCTGATTGATATATACCGGTATATTGTTGAAAATAGTGAGTTTCAAAACATTCGCGTCATGTTGAAAAATAAGTTTGCAGATAAAATTAGGCGGATTTACAAATGACCGACCATCCCATGTC</canonical>
            <polymorphic>AAGCTCCGAGTTCTCATCGCCCATATCTTCGGTCTTGAATTCGGCCAACTTTTTCAACAACTCTCTCTCACTCTCCTCAACACGTTTGATGTCACTGAAAAAATAGAATAATCAGTTAATCTGATAAAAAGTACAAAACAAAAGTAGTGAAGTTTTGCAAATCTTTGGAAAACTTGAATTAGGAAGACGTGACGCCCTTGATAACCAAATAGTAAAAAGAGGTAATCAGCCGAAATCAGCCGAACACTGCCACTACAGTAGTCACGTCTTCTGGGGACTACGTCAGGTGTTCACTAACCTTTGCGTTTTCTTGATAGCTTCTTTAGTAGATGCCAGAGAGGCCTTCAGCTTGTGAGATTTTTTCAACTCAATTTGATATTGTTGTGGCCAGTTAGCAGCAATCATTGGCTTCAGAATAGCACGGAGATTTTTCTAAACAAGAATGTGGGTTATCAGATTACGGTAGTTGGTTGGTCACCTGTTGCTTGAGAAGCTGGCGRAGCTCCTCCTCCTGAACAAGGTAGTCGGCGATTTCTTGTGGAGTCATTGTCTCGGCAAGCTTATTCACATCGGCTCTGAAATTAATAATAGAACAAATCTTCTGGAAAAAATGAGAAACTTGCCTTTGAAAGTCATCAAAATCATCATTCTGTGGAAACGTAGCAGCGCCCAACATGATTTTCTTGTTCTCCATCACTGACATGTAGTCTGAATTGAAAAATAATCGTAAAATATACGAATAAATACTAGGAAGAGGGAGGTATGAAAAAAGTGAACTATCCGGTCATGTCTTGTGCGTGATTTTCTGTATGTCAAACAGGGCGGTCAATTCTGATATCTATTCATGTTTCAGAAAAAAATATCTTGTGGTGGTGGTCTCTGATTGATATATACCGGTATATTGTTGAAAATAGTGAGTTTCAAAACATTCGCGTCATGTTGAAAAATAAGTTTGCAGATAAAATTAGGCGGATTTACAAATGACCGACCATCCCATGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>496 325 147 32</canonical_bands>
                <polymorphic_bands>821 147 32</polymorphic_bands>
            </assay>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAACTCAATTTGATATTGTTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCCAGAAGATTTGTTCTATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCAACTCAATTTGATATTGTTGTGGCCAGTTAGCAGCAATCATTGGCTTCAGAATAGCACGGAGATTTTTCTAAACAAGAATGTGGGTTATCAGATTACGGTAGTTGGTTGGTCACCTGTTGCTTGAGAAGCTGGCGGAGCTCCTCCTCCTGAACAAGGTAGTCGGCGATTTCTTGTGGAGTCATTGTCTCGGCAAGCTTATTCACATCGGCTCTGAAATTAATAATAGAACAAATCTTCTGGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTCAACTCAATTTGATATTGTTGTGGCCAGTTAGCAGCAATCATTGGCTTCAGAATAGCACGGAGATTTTTCTAAACAAGAATGTGGGTTATCAGATTACGGTAGTTGGTTGGTCACCTGTTGCTTGAGAAGCTGGCGRAGCTCCTCCTCCTGAACAAGGTAGTCGGCGATTTCTTGTGGAGTCATTGTCTCGGCAAGCTTATTCACATCGGCTCTGAAATTAATAATAGAACAAATCTTCTGGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1821</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>333925</contig_pos>
        <strand>+</strand>
        <context>CCTCCTGAAC[A/T]AGGTAGTCGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGGTTGGTCACCTGTTGCTTGAGAAGCTGGCGGAGCTCCTCCTCCTGAAC</left_flank>
        <right_flank>AGGTAGTCGGCGATTTCTTGTGGAGTCATTGTCTCGGCAAGCTTATTCAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCCATATCTTCGGTCTTGAATTCGGCCAACTTTTTCAACAACTCTCTCTCACTCTCCTCAACACGTTTGATGTCACTGAAAAAATAGAATAATCAGTTAATCTGATAAAAAGTACAAAACAAAAGTAGTGAAGTTTTGCAAATCTTTGGAAAACTTGAATTAGGAAGACGTGACGCCCTTGATAACCAAATAGTAAAAAGAGGTAATCAGCCGAAATCAGCCGAACACTGCCACTACAGTAGTCACGTCTTCTGGGGACTACGTCAGGTGTTCACTAACCTTTGCGTTTTCTTGATAGCTTCTTTAGTAGATGCCAGAGAGGCCTTCAGCTTGTGAGATTTTTTCAACTCAATTTGATATTGTTGTGGCCAGTTAGCAGCAATCATTGGCTTCAGAATAGCACGGAGATTTTTCTAAACAAGAATGTGGGTTATCAGATTACGGTAGTTGGTTGGTCACCTGTTGCTTGAGAAGCTGGCGGAGCTCCTCCTCCTGAACAAGGTAGTCGGCGATTTCTTGTGGAGTCATTGTCTCGGCAAGCTTATTCACATCGGCTCTGAAATTAATAATAGAACAAATCTTCTGGAAAAAATGAGAAACTTGCCTTTGAAAGTCATCAAAATCATCATTCTGTGGAAACGTAGCAGCGCCCAACATGATTTTCTTGTTCTCCATCACTGACATGTAGTCTGAATTGAAAAATAATCGTAAAATATACGAATAAATACTAGGAAGAGGGAGGTATGAAAAAAGTGAACTATCCGGTCATGTCTTGTGCGTGATTTTCTGTATGTCAAACAGGGCGGTCAATTCTGATATCTATTCATGTTTCAGAAAAAAATATCTTGTGGTGGTGGTCTCTGATTGATATATACCGGTATATTGTTGAAAATAGTGAGTTTCAAAACATTCGCGTCATGTTGAAAAATAAGTTTGCAGATAAAATTAGGCGGATTTACAAATGACCGACCATCCCATGTCTCCCACAGTGGTGGAAAT</canonical>
            <polymorphic>GCCCATATCTTCGGTCTTGAATTCGGCCAACTTTTTCAACAACTCTCTCTCACTCTCCTCAACACGTTTGATGTCACTGAAAAAATAGAATAATCAGTTAATCTGATAAAAAGTACAAAACAAAAGTAGTGAAGTTTTGCAAATCTTTGGAAAACTTGAATTAGGAAGACGTGACGCCCTTGATAACCAAATAGTAAAAAGAGGTAATCAGCCGAAATCAGCCGAACACTGCCACTACAGTAGTCACGTCTTCTGGGGACTACGTCAGGTGTTCACTAACCTTTGCGTTTTCTTGATAGCTTCTTTAGTAGATGCCAGAGAGGCCTTCAGCTTGTGAGATTTTTTCAACTCAATTTGATATTGTTGTGGCCAGTTAGCAGCAATCATTGGCTTCAGAATAGCACGGAGATTTTTCTAAACAAGAATGTGGGTTATCAGATTACGGTAGTTGGTTGGTCACCTGTTGCTTGAGAAGCTGGCGGAGCTCCTCCTCCTGAACWAGGTAGTCGGCGATTTCTTGTGGAGTCATTGTCTCGGCAAGCTTATTCACATCGGCTCTGAAATTAATAATAGAACAAATCTTCTGGAAAAAATGAGAAACTTGCCTTTGAAAGTCATCAAAATCATCATTCTGTGGAAACGTAGCAGCGCCCAACATGATTTTCTTGTTCTCCATCACTGACATGTAGTCTGAATTGAAAAATAATCGTAAAATATACGAATAAATACTAGGAAGAGGGAGGTATGAAAAAAGTGAACTATCCGGTCATGTCTTGTGCGTGATTTTCTGTATGTCAAACAGGGCGGTCAATTCTGATATCTATTCATGTTTCAGAAAAAAATATCTTGTGGTGGTGGTCTCTGATTGATATATACCGGTATATTGTTGAAAATAGTGAGTTTCAAAACATTCGCGTCATGTTGAAAAATAAGTTTGCAGATAAAATTAGGCGGATTTACAAATGACCGACCATCCCATGTCTCCCACAGTGGTGGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAACTCAATTTGATATTGTTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCCAGAAGATTTGTTCTATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCAACTCAATTTGATATTGTTGTGGCCAGTTAGCAGCAATCATTGGCTTCAGAATAGCACGGAGATTTTTCTAAACAAGAATGTGGGTTATCAGATTACGGTAGTTGGTTGGTCACCTGTTGCTTGAGAAGCTGGCGGAGCTCCTCCTCCTGAACAAGGTAGTCGGCGATTTCTTGTGGAGTCATTGTCTCGGCAAGCTTATTCACATCGGCTCTGAAATTAATAATAGAACAAATCTTCTGGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTCAACTCAATTTGATATTGTTGTGGCCAGTTAGCAGCAATCATTGGCTTCAGAATAGCACGGAGATTTTTCTAAACAAGAATGTGGGTTATCAGATTACGGTAGTTGGTTGGTCACCTGTTGCTTGAGAAGCTGGCGGAGCTCCTCCTCCTGAACWAGGTAGTCGGCGATTTCTTGTGGAGTCATTGTCTCGGCAAGCTTATTCACATCGGCTCTGAAATTAATAATAGAACAAATCTTCTGGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1822</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>334065</contig_pos>
        <strand>+</strand>
        <context>TTCTGTGGAA[A/T]CGTAGCAGCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATGAGAAACTTGCCTTTGAAAGTCATCAAAATCATCATTCTGTGGAA</left_flank>
        <right_flank>CGTAGCAGCGCCCAACATGATTTTCTTGTTCTCCATCACTGACATGTAGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATCTTTGGAAAACTTGAATTAGGAAGACGTGACGCCCTTGATAACCAAATAGTAAAAAGAGGTAATCAGCCGAAATCAGCCGAACACTGCCACTACAGTAGTCACGTCTTCTGGGGACTACGTCAGGTGTTCACTAACCTTTGCGTTTTCTTGATAGCTTCTTTAGTAGATGCCAGAGAGGCCTTCAGCTTGTGAGATTTTTTCAACTCAATTTGATATTGTTGTGGCCAGTTAGCAGCAATCATTGGCTTCAGAATAGCACGGAGATTTTTCTAAACAAGAATGTGGGTTATCAGATTACGGTAGTTGGTTGGTCACCTGTTGCTTGAGAAGCTGGCGGAGCTCCTCCTCCTGAACAAGGTAGTCGGCGATTTCTTGTGGAGTCATTGTCTCGGCAAGCTTATTCACATCGGCTCTGAAATTAATAATAGAACAAATCTTCTGGAAAAAATGAGAAACTTGCCTTTGAAAGTCATCAAAATCATCATTCTGTGGAAACGTAGCAGCGCCCAACATGATTTTCTTGTTCTCCATCACTGACATGTAGTCTGAATTGAAAAATAATCGTAAAATATACGAATAAATACTAGGAAGAGGGAGGTATGAAAAAAGTGAACTATCCGGTCATGTCTTGTGCGTGATTTTCTGTATGTCAAACAGGGCGGTCAATTCTGATATCTATTCATGTTTCAGAAAAAAATATCTTGTGGTGGTGGTCTCTGATTGATATATACCGGTATATTGTTGAAAATAGTGAGTTTCAAAACATTCGCGTCATGTTGAAAAATAAGTTTGCAGATAAAATTAGGCGGATTTACAAATGACCGACCATCCCATGTCTCCCACAGTGGTGGAAATAGAAAGTGACGAAAAACCGAACTACTCTGACCGAATGAATTGCGAAGGGCAGGACCGAGTGATGGTTTTATGGGCTTGAGAAAATGGTATTGGGTTGTGTCACCAAAAACAGGGTGAAAAAAGGGGTGGGATTTCTTGTA</canonical>
            <polymorphic>AAATCTTTGGAAAACTTGAATTAGGAAGACGTGACGCCCTTGATAACCAAATAGTAAAAAGAGGTAATCAGCCGAAATCAGCCGAACACTGCCACTACAGTAGTCACGTCTTCTGGGGACTACGTCAGGTGTTCACTAACCTTTGCGTTTTCTTGATAGCTTCTTTAGTAGATGCCAGAGAGGCCTTCAGCTTGTGAGATTTTTTCAACTCAATTTGATATTGTTGTGGCCAGTTAGCAGCAATCATTGGCTTCAGAATAGCACGGAGATTTTTCTAAACAAGAATGTGGGTTATCAGATTACGGTAGTTGGTTGGTCACCTGTTGCTTGAGAAGCTGGCGGAGCTCCTCCTCCTGAACAAGGTAGTCGGCGATTTCTTGTGGAGTCATTGTCTCGGCAAGCTTATTCACATCGGCTCTGAAATTAATAATAGAACAAATCTTCTGGAAAAAATGAGAAACTTGCCTTTGAAAGTCATCAAAATCATCATTCTGTGGAAWCGTAGCAGCGCCCAACATGATTTTCTTGTTCTCCATCACTGACATGTAGTCTGAATTGAAAAATAATCGTAAAATATACGAATAAATACTAGGAAGAGGGAGGTATGAAAAAAGTGAACTATCCGGTCATGTCTTGTGCGTGATTTTCTGTATGTCAAACAGGGCGGTCAATTCTGATATCTATTCATGTTTCAGAAAAAAATATCTTGTGGTGGTGGTCTCTGATTGATATATACCGGTATATTGTTGAAAATAGTGAGTTTCAAAACATTCGCGTCATGTTGAAAAATAAGTTTGCAGATAAAATTAGGCGGATTTACAAATGACCGACCATCCCATGTCTCCCACAGTGGTGGAAATAGAAAGTGACGAAAAACCGAACTACTCTGACCGAATGAATTGCGAAGGGCAGGACCGAGTGATGGTTTTATGGGCTTGAGAAAATGGTATTGGGTTGTGTCACCAAAAACAGGGTGAAAAAAGGGGTGGGATTTCTTGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>500 378 77 29 16</canonical_bands>
                <polymorphic_bands>878 77 29 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTCTTGTGGAGTCATTGTC</pcr_primer_p1>
		<pcr_primer_p2>TCATACCTCCCTCTTCCTAGTAT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GATTTCTTGTGGAGTCATTGTCTCGGCAAGCTTATTCACATCGGCTCTGAAATTAATAATAGAACAAATCTTCTGGAAAAAATGAGAAACTTGCCTTTGAAAGTCATCAAAATCATCATTCTGTGGAAACGTAGCAGCGCCCAACATGATTTTCTTGTTCTCCATCACTGACATGTAGTCTGAATTGAAAAATAATCGTAAAATATACGAATAAATACTAGGAAGAGGGAGGTATGA</canonical_amplicon>
		<polymorphic_amplicon>GATTTCTTGTGGAGTCATTGTCTCGGCAAGCTTATTCACATCGGCTCTGAAATTAATAATAGAACAAATCTTCTGGAAAAAATGAGAAACTTGCCTTTGAAAGTCATCAAAATCATCATTCTGTGGAAWCGTAGCAGCGCCCAACATGATTTTCTTGTTCTCCATCACTGACATGTAGTCTGAATTGAAAAATAATCGTAAAATATACGAATAAATACTAGGAAGAGGGAGGTATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1823</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>335182</contig_pos>
        <strand>+</strand>
        <context>GTCTGAATAA[A/C]AATTGTATCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCGGATACTAGGTTATACTCAGCAATGAATCATCTATCAGTCTGAATAA</left_flank>
        <right_flank>AATTGTATCATTGGTTAAGAACTGATATGAGTATCCACTTCCTTTAGTTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATCGAACATAGACGTGTTTCCATCAATCATGGCGAGAGAAAAAAGAGAAGCGGTCAATACTGGGAGGTTAGCAAGAGAATTATATCAGAAGAACTTGGCCCGATTGTTGATACTGATTTGCACTTTTCCGGGTGGAGAATACCATCTTATTGTTTGAATCTGCCGTTTCCGCTACACGTATGAAATTTGAAATTTGGTAAGACCAAAAATGTCAAACAAGAAATGGAAGATAGGGCTGTGTTAGAGGATCATTTTAGATTGAACGAATGAAATGGAGCCGCCAGCTGTTGCTCGTACCGTTTTTGGTGCCGGGTTCGGTCAACCTCGGTCAGCTATAAATTCGTTTGGACCATGAGAATTTTCGAGAAGGAAATGAAAATGAAATGATTCACGTATTCCCATCACGGGAACTCGTTTCATAAACAAAATGAAATCGTAAAAACAATTTCCGGATACTAGGTTATACTCAGCAATGAATCATCTATCAGTCTGAATAACAATTGTATCATTGGTTAAGAACTGATATGAGTATCCACTTCCTTTAGTTGGCCGACATTTTCTTCACTTCCTCAACAATAAGGTCAGAAAAAAAGAAGTGTCGACCGGTATAAAATTGCATGTTTGTGTATGGTTCAGTTTTACAAGACCGGCGACAATCATAGGCAGAAAAAAAAGGGAAGAGAAGTAATTGGATTTCGGATGAGGGCTTCGGTGTGAAGCAATCGTTTTTCTATCACATAAGACACAATTTGCTGTCCTGTGATTTTTTTGGCTAACAAAAGGAATCAGAAAACAAAAGCGACTGATCTCAGAGAATTGGAAGAAAAAAAATATAAAAAGTGATTTTGAGACCCTCAGTTCCAAGGAACCATACATTTTTGGTGTTCATATTCACAAACAAAGAATTGTAATTTTTATAATGCAAAACAATCGTAAAGAGAAAATGAGAAGAACATGGAAATTTAAAAATAACATTTAATAGAAAGACCCCCTGATGT</canonical>
            <polymorphic>CGATCGAACATAGACGTGTTTCCATCAATCATGGCGAGAGAAAAAAGAGAAGCGGTCAATACTGGGAGGTTAGCAAGAGAATTATATCAGAAGAACTTGGCCCGATTGTTGATACTGATTTGCACTTTTCCGGGTGGAGAATACCATCTTATTGTTTGAATCTGCCGTTTCCGCTACACGTATGAAATTTGAAATTTGGTAAGACCAAAAATGTCAAACAAGAAATGGAAGATAGGGCTGTGTTAGAGGATCATTTTAGATTGAACGAATGAAATGGAGCCGCCAGCTGTTGCTCGTACCGTTTTTGGTGCCGGGTTCGGTCAACCTCGGTCAGCTATAAATTCGTTTGGACCATGAGAATTTTCGAGAAGGAAATGAAAATGAAATGATTCACGTATTCCCATCACGGGAACTCGTTTCATAAACAAAATGAAATCGTAAAAACAATTTCCGGATACTAGGTTATACTCAGCAATGAATCATCTATCAGTCTGAATAAMAATTGTATCATTGGTTAAGAACTGATATGAGTATCCACTTCCTTTAGTTGGCCGACATTTTCTTCACTTCCTCAACAATAAGGTCAGAAAAAAAGAAGTGTCGACCGGTATAAAATTGCATGTTTGTGTATGGTTCAGTTTTACAAGACCGGCGACAATCATAGGCAGAAAAAAAAGGGAAGAGAAGTAATTGGATTTCGGATGAGGGCTTCGGTGTGAAGCAATCGTTTTTCTATCACATAAGACACAATTTGCTGTCCTGTGATTTTTTTGGCTAACAAAAGGAATCAGAAAACAAAAGCGACTGATCTCAGAGAATTGGAAGAAAAAAAATATAAAAAGTGATTTTGAGACCCTCAGTTCCAAGGAACCATACATTTTTGGTGTTCATATTCACAAACAAAGAATTGTAATTTTTATAATGCAAAACAATCGTAAAGAGAAAATGAGAAGAACATGGAAATTTAAAAATAACATTTAATAGAAAGACCCCCTGATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAATTTCCGGATACTAGGTTAT</pcr_primer_p1>
		<pcr_primer_p2>CCAATTACTTCTCTTCCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACAATTTCCGGATACTAGGTTATACTCAGCAATGAATCATCTATCAGTCTGAATAACAATTGTATCATTGGTTAAGAACTGATATGAGTATCCACTTCCTTTAGTTGGCCGACATTTTCTTCACTTCCTCAACAATAAGGTCAGAAAAAAAGAAGTGTCGACCGGTATAAAATTGCATGTTTGTGTATGGTTCAGTTTTACAAGACCGGCGACAATCATAGGCAGAAAAAAAAGGGAAGAGAAGTAATTGG</canonical_amplicon>
		<polymorphic_amplicon>ACAATTTCCGGATACTAGGTTATACTCAGCAATGAATCATCTATCAGTCTGAATAAMAATTGTATCATTGGTTAAGAACTGATATGAGTATCCACTTCCTTTAGTTGGCCGACATTTTCTTCACTTCCTCAACAATAAGGTCAGAAAAAAAGAAGTGTCGACCGGTATAAAATTGCATGTTTGTGTATGGTTCAGTTTTACAAGACCGGCGACAATCATAGGCAGAAAAAAAAGGGAAGAGAAGTAATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1824</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>335035</contig_pos>
        <strand>+</strand>
        <context>TCGTTTGGAC[C/G]ATGAGAATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTGGTGCCGGGTTCGGTCAACCTCGGTCAGCTATAAATTCGTTTGGAC</left_flank>
        <right_flank>ATGAGAATTTTCGAGAAGGAAATGAAAATGAAATGATTCACGTATTCCCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGGTGAAAAAAGGGGTGGGATTTCTTGTAGCCCGTCCGCCTATTTCAGAGGAAAAAAAATAGAATCCAATAAATATCGAATTTTGACTTTAAGCAAAATGAGGAGGGTGGGACTCTTGAAAAGAAATGAAGAGGAAAAAAAAAGAACGATCGAACATAGACGTGTTTCCATCAATCATGGCGAGAGAAAAAAGAGAAGCGGTCAATACTGGGAGGTTAGCAAGAGAATTATATCAGAAGAACTTGGCCCGATTGTTGATACTGATTTGCACTTTTCCGGGTGGAGAATACCATCTTATTGTTTGAATCTGCCGTTTCCGCTACACGTATGAAATTTGAAATTTGGTAAGACCAAAAATGTCAAACAAGAAATGGAAGATAGGGCTGTGTTAGAGGATCATTTTAGATTGAACGAATGAAATGGAGCCGCCAGCTGTTGCTCGTACCGTTTTTGGTGCCGGGTTCGGTCAACCTCGGTCAGCTATAAATTCGTTTGGACCATGAGAATTTTCGAGAAGGAAATGAAAATGAAATGATTCACGTATTCCCATCACGGGAACTCGTTTCATAAACAAAATGAAATCGTAAAAACAATTTCCGGATACTAGGTTATACTCAGCAATGAATCATCTATCAGTCTGAATAACAATTGTATCATTGGTTAAGAACTGATATGAGTATCCACTTCCTTTAGTTGGCCGACATTTTCTTCACTTCCTCAACAATAAGGTCAGAAAAAAAGAAGTGTCGACCGGTATAAAATTGCATGTTTGTGTATGGTTCAGTTTTACAAGACCGGCGACAATCATAGGCAGAAAAAAAAGGGAAGAGAAGTAATTGGATTTCGGATGAGGGCTTCGGTGTGAAGCAATCGTTTTTCTATCACATAAGACACAATTTGCTGTCCTGTGATTTTTTTGGCTAACAAAAGGAATCAGAAAACAAAAGCGACTGATCTCAGAGAATTGGAAGAAAAAAAATATAAAAAGTGATTTTGAGA</canonical>
            <polymorphic>AGGGTGAAAAAAGGGGTGGGATTTCTTGTAGCCCGTCCGCCTATTTCAGAGGAAAAAAAATAGAATCCAATAAATATCGAATTTTGACTTTAAGCAAAATGAGGAGGGTGGGACTCTTGAAAAGAAATGAAGAGGAAAAAAAAAGAACGATCGAACATAGACGTGTTTCCATCAATCATGGCGAGAGAAAAAAGAGAAGCGGTCAATACTGGGAGGTTAGCAAGAGAATTATATCAGAAGAACTTGGCCCGATTGTTGATACTGATTTGCACTTTTCCGGGTGGAGAATACCATCTTATTGTTTGAATCTGCCGTTTCCGCTACACGTATGAAATTTGAAATTTGGTAAGACCAAAAATGTCAAACAAGAAATGGAAGATAGGGCTGTGTTAGAGGATCATTTTAGATTGAACGAATGAAATGGAGCCGCCAGCTGTTGCTCGTACCGTTTTTGGTGCCGGGTTCGGTCAACCTCGGTCAGCTATAAATTCGTTTGGACSATGAGAATTTTCGAGAAGGAAATGAAAATGAAATGATTCACGTATTCCCATCACGGGAACTCGTTTCATAAACAAAATGAAATCGTAAAAACAATTTCCGGATACTAGGTTATACTCAGCAATGAATCATCTATCAGTCTGAATAACAATTGTATCATTGGTTAAGAACTGATATGAGTATCCACTTCCTTTAGTTGGCCGACATTTTCTTCACTTCCTCAACAATAAGGTCAGAAAAAAAGAAGTGTCGACCGGTATAAAATTGCATGTTTGTGTATGGTTCAGTTTTACAAGACCGGCGACAATCATAGGCAGAAAAAAAAGGGAAGAGAAGTAATTGGATTTCGGATGAGGGCTTCGGTGTGAAGCAATCGTTTTTCTATCACATAAGACACAATTTGCTGTCCTGTGATTTTTTTGGCTAACAAAAGGAATCAGAAAACAAAAGCGACTGATCTCAGAGAATTGGAAGAAAAAAAATATAAAAAGTGATTTTGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>504 250 246</canonical_bands>
                <polymorphic_bands>754 246</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>323 266 234 177</canonical_bands>
                <polymorphic_bands>589 234 177</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAAGACCAAAAATGTCAAACAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTTTTACGATTTCATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAAGACCAAAAATGTCAAACAAGAAATGGAAGATAGGGCTGTGTTAGAGGATCATTTTAGATTGAACGAATGAAATGGAGCCGCCAGCTGTTGCTCGTACCGTTTTTGGTGCCGGGTTCGGTCAACCTCGGTCAGCTATAAATTCGTTTGGACCATGAGAATTTTCGAGAAGGAAATGAAAATGAAATGATTCACGTATTCCCATCACGGGAACTCGTTTCATAAACAAAATGAAATCGTAAAAACAAT</canonical_amplicon>
		<polymorphic_amplicon>GTAAGACCAAAAATGTCAAACAAGAAATGGAAGATAGGGCTGTGTTAGAGGATCATTTTAGATTGAACGAATGAAATGGAGCCGCCAGCTGTTGCTCGTACCGTTTTTGGTGCCGGGTTCGGTCAACCTCGGTCAGCTATAAATTCGTTTGGACSATGAGAATTTTCGAGAAGGAAATGAAAATGAAATGATTCACGTATTCCCATCACGGGAACTCGTTTCATAAACAAAATGAAATCGTAAAAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1825</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>345958</contig_pos>
        <strand>+</strand>
        <context>TCCAGTAATG[C/T]CAAGCCCAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGGCAAGAATTTTTTTGACGAAGGATAACTCACGTTCTATCCAGTAATG</left_flank>
        <right_flank>CAAGCCCAAAATACTGACCCATTTATTTAATTTTCTTTATGCTTCCTTTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCATGTTTTCTAGTTTTTGCAAAAAAGAAAAGAACAATTGACACACATACTCCATTTTCGTTGACATACACTCATACTTACTATTGTTTTTAGGCAGTCCTTACGGCGGCACCTCCCTCTGCTCGATTTTCAAGAATGACGTATTCTTTCGGTGCTTTTGCTTTCTTTTCTTCGGTCCTCCTCTTCCCGAGAAGCAAACATTTTGTCCCAGTTGTATTTTTCGTCTCTACTGCCTTTGCTTTATTTATAAACGTTAAGCTGACCTCATTTATGTTTACTTTTTTCAGTGAGTTGCACCACTCAAATTTTGGTTTCTTCCTCCTAGAGAAACATAACGATAGTAAGAAAAAGGCGGAAGTTTCTGGTAGGGGATTTGAAATTAGTTTCTGAATTTCCACAGAAAACTTGTGCATTTTTCATGAGTGTGACGATAGACGATCCTCTGGGGAGGGCAAGAATTTTTTTGACGAAGGATAACTCACGTTCTATCCAGTAATGCCAAGCCCAAAATACTGACCCATTTATTTAATTTTCTTTATGCTTCCTTTCTGTCATAAACCCTACTTTTCAATTCGTAAGTAGCCTTTCTTTTTTCACAAAGGGAATTCCTAGAAACCGAATTCTCATTCTTCTCCAAAAAATTTCATTCTGGGCACACAAGACATTCTTCTTCCGTCCTGTCACTTGCATCTCTTTTCTTTTCAATAATTTCATTTTTTCCGTTATTCTCTTATTCTCTGTGATTAATTGGATTCCATGACGTGTATTCTTTTTGCACCACACAATAGACTCCAACAAAACATAGATACAGTTTTTCTAGCTATTCTAGAATATTCCTTTTTTCCAGATGGTTATTCACTGTGCATCTCATCGCTCCTCAACAGCTAGTGCATTTTTAATGCCAGACTTTTCAAATAAATTGATAAAATTGGAGGATAAATACGAATATAATGATTCCTTGGACTCGATGATCGGCATGGGTGCATTTGGTGCAGTTTT</canonical>
            <polymorphic>TTCATGTTTTCTAGTTTTTGCAAAAAAGAAAAGAACAATTGACACACATACTCCATTTTCGTTGACATACACTCATACTTACTATTGTTTTTAGGCAGTCCTTACGGCGGCACCTCCCTCTGCTCGATTTTCAAGAATGACGTATTCTTTCGGTGCTTTTGCTTTCTTTTCTTCGGTCCTCCTCTTCCCGAGAAGCAAACATTTTGTCCCAGTTGTATTTTTCGTCTCTACTGCCTTTGCTTTATTTATAAACGTTAAGCTGACCTCATTTATGTTTACTTTTTTCAGTGAGTTGCACCACTCAAATTTTGGTTTCTTCCTCCTAGAGAAACATAACGATAGTAAGAAAAAGGCGGAAGTTTCTGGTAGGGGATTTGAAATTAGTTTCTGAATTTCCACAGAAAACTTGTGCATTTTTCATGAGTGTGACGATAGACGATCCTCTGGGGAGGGCAAGAATTTTTTTGACGAAGGATAACTCACGTTCTATCCAGTAATGYCAAGCCCAAAATACTGACCCATTTATTTAATTTTCTTTATGCTTCCTTTCTGTCATAAACCCTACTTTTCAATTCGTAAGTAGCCTTTCTTTTTTCACAAAGGGAATTCCTAGAAACCGAATTCTCATTCTTCTCCAAAAAATTTCATTCTGGGCACACAAGACATTCTTCTTCCGTCCTGTCACTTGCATCTCTTTTCTTTTCAATAATTTCATTTTTTCCGTTATTCTCTTATTCTCTGTGATTAATTGGATTCCATGACGTGTATTCTTTTTGCACCACACAATAGACTCCAACAAAACATAGATACAGTTTTTCTAGCTATTCTAGAATATTCCTTTTTTCCAGATGGTTATTCACTGTGCATCTCATCGCTCCTCAACAGCTAGTGCATTTTTAATGCCAGACTTTTCAAATAAATTGATAAAATTGGAGGATAAATACGAATATAATGATTCCTTGGACTCGATGATCGGCATGGGTGCATTTGGTGCAGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTCCTCCTAGAGAAACATAA</pcr_primer_p1>
		<pcr_primer_p2>GTTTATGACAGAAAGGAAGCATA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTCTTCCTCCTAGAGAAACATAACGATAGTAAGAAAAAGGCGGAAGTTTCTGGTAGGGGATTTGAAATTAGTTTCTGAATTTCCACAGAAAACTTGTGCATTTTTCATGAGTGTGACGATAGACGATCCTCTGGGGAGGGCAAGAATTTTTTTGACGAAGGATAACTCACGTTCTATCCAGTAATGCCAAGCCCAAAATACTGACCCATTTATTTAATTTTCTTTATGCTTCCTTTCTGTCATAAAC</canonical_amplicon>
		<polymorphic_amplicon>TTCTTCCTCCTAGAGAAACATAACGATAGTAAGAAAAAGGCGGAAGTTTCTGGTAGGGGATTTGAAATTAGTTTCTGAATTTCCACAGAAAACTTGTGCATTTTTCATGAGTGTGACGATAGACGATCCTCTGGGGAGGGCAAGAATTTTTTTGACGAAGGATAACTCACGTTCTATCCAGTAATGYCAAGCCCAAAATACTGACCCATTTATTTAATTTTCTTTATGCTTCCTTTCTGTCATAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1826</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>346245</contig_pos>
        <strand>+</strand>
        <context>CACCACACAA[C/T]AGACTCCAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCTGTGATTAATTGGATTCCATGACGTGTATTCTTTTTGCACCACACAA</left_flank>
        <right_flank>AGACTCCAACAAAACATAGATACAGTTTTTCTAGCTATTCTAGAATATTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGAGTTGCACCACTCAAATTTTGGTTTCTTCCTCCTAGAGAAACATAACGATAGTAAGAAAAAGGCGGAAGTTTCTGGTAGGGGATTTGAAATTAGTTTCTGAATTTCCACAGAAAACTTGTGCATTTTTCATGAGTGTGACGATAGACGATCCTCTGGGGAGGGCAAGAATTTTTTTGACGAAGGATAACTCACGTTCTATCCAGTAATGCCAAGCCCAAAATACTGACCCATTTATTTAATTTTCTTTATGCTTCCTTTCTGTCATAAACCCTACTTTTCAATTCGTAAGTAGCCTTTCTTTTTTCACAAAGGGAATTCCTAGAAACCGAATTCTCATTCTTCTCCAAAAAATTTCATTCTGGGCACACAAGACATTCTTCTTCCGTCCTGTCACTTGCATCTCTTTTCTTTTCAATAATTTCATTTTTTCCGTTATTCTCTTATTCTCTGTGATTAATTGGATTCCATGACGTGTATTCTTTTTGCACCACACAATAGACTCCAACAAAACATAGATACAGTTTTTCTAGCTATTCTAGAATATTCCTTTTTTCCAGATGGTTATTCACTGTGCATCTCATCGCTCCTCAACAGCTAGTGCATTTTTAATGCCAGACTTTTCAAATAAATTGATAAAATTGGAGGATAAATACGAATATAATGATTCCTTGGACTCGATGATCGGCATGGGTGCATTTGGTGCAGTTTTCAAGGGAAACGTGAAAGATTCCACCGATCCGGTATGGAAATTTGACACCATTTCCGTTTTTGGTCGTGTGACTGAAATCCCATCGTTTCAGGTTGCAATCAAACGAATGCTCAAAGTACACGTAAAAGAGAGCGAGTTGAAGTTAATTAAAGAACTCCACTCGGAGTATTTGGTTGGCGTACTAGACATTTGCAATTATGACGACTTCTTCTGTTGTCTTATTATGGAACTTTGCGATTGTGATCTAGACCACCATATGCGAAACATTTCCGAGAAAGGGAGATTGA</canonical>
            <polymorphic>GTGAGTTGCACCACTCAAATTTTGGTTTCTTCCTCCTAGAGAAACATAACGATAGTAAGAAAAAGGCGGAAGTTTCTGGTAGGGGATTTGAAATTAGTTTCTGAATTTCCACAGAAAACTTGTGCATTTTTCATGAGTGTGACGATAGACGATCCTCTGGGGAGGGCAAGAATTTTTTTGACGAAGGATAACTCACGTTCTATCCAGTAATGCCAAGCCCAAAATACTGACCCATTTATTTAATTTTCTTTATGCTTCCTTTCTGTCATAAACCCTACTTTTCAATTCGTAAGTAGCCTTTCTTTTTTCACAAAGGGAATTCCTAGAAACCGAATTCTCATTCTTCTCCAAAAAATTTCATTCTGGGCACACAAGACATTCTTCTTCCGTCCTGTCACTTGCATCTCTTTTCTTTTCAATAATTTCATTTTTTCCGTTATTCTCTTATTCTCTGTGATTAATTGGATTCCATGACGTGTATTCTTTTTGCACCACACAAYAGACTCCAACAAAACATAGATACAGTTTTTCTAGCTATTCTAGAATATTCCTTTTTTCCAGATGGTTATTCACTGTGCATCTCATCGCTCCTCAACAGCTAGTGCATTTTTAATGCCAGACTTTTCAAATAAATTGATAAAATTGGAGGATAAATACGAATATAATGATTCCTTGGACTCGATGATCGGCATGGGTGCATTTGGTGCAGTTTTCAAGGGAAACGTGAAAGATTCCACCGATCCGGTATGGAAATTTGACACCATTTCCGTTTTTGGTCGTGTGACTGAAATCCCATCGTTTCAGGTTGCAATCAAACGAATGCTCAAAGTACACGTAAAAGAGAGCGAGTTGAAGTTAATTAAAGAACTCCACTCGGAGTATTTGGTTGGCGTACTAGACATTTGCAATTATGACGACTTCTTCTGTTGTCTTATTATGGAACTTTGCGATTGTGATCTAGACCACCATATGCGAAACATTTCCGAGAAAGGGAGATTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGCATCTCTTTTCTTTTCAATA</pcr_primer_p1>
		<pcr_primer_p2>TCCTCCAATTTTATCAATTTATTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTGCATCTCTTTTCTTTTCAATAATTTCATTTTTTCCGTTATTCTCTTATTCTCTGTGATTAATTGGATTCCATGACGTGTATTCTTTTTGCACCACACAATAGACTCCAACAAAACATAGATACAGTTTTTCTAGCTATTCTAGAATATTCCTTTTTTCCAGATGGTTATTCACTGTGCATCTCATCGCTCCTCAACAGCTAGTGCATTTTTAATGCCAGACTTTTCAAATAAATTGATAAAATTGGAGGA</canonical_amplicon>
		<polymorphic_amplicon>TTGCATCTCTTTTCTTTTCAATAATTTCATTTTTTCCGTTATTCTCTTATTCTCTGTGATTAATTGGATTCCATGACGTGTATTCTTTTTGCACCACACAAYAGACTCCAACAAAACATAGATACAGTTTTTCTAGCTATTCTAGAATATTCCTTTTTTCCAGATGGTTATTCACTGTGCATCTCATCGCTCCTCAACAGCTAGTGCATTTTTAATGCCAGACTTTTCAAATAAATTGATAAAATTGGAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1827</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>349254</contig_pos>
        <strand>+</strand>
        <context>CCGTTTACGG[A/G]TTTTGGGGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTTCTTGACACTTCTCACAGAAACAGAGCTGGGATTTCCCGTTTACGG</left_flank>
        <right_flank>TTTTGGGGATTTCACAGATTTCACTAGTTGTTCTGCAGTTTGTAAATTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCCTGAAAGACAGAAGTTATTTCAAGTGATGACAGTTGTCACTGGAACATTTCGAAACATGACACGTACCCATTCCTTTCAAAAGGCCAACTGTTGTTTGGATACACCGGAGAGCTGGAGAACAAAGAACATGGTTGATTTCAATGCCGTTGTCACGTAGAGCACGTCCTGAAAATGGGTAACAGGAGATTAGGTAACGGGAGAAGAGTTAATTTGAAGTTATTTTAATAATCTAACTGATGAAAATTTGAAAAAATTTCAGAAGCGACCTGAGTGGGCATTCCTAAAACTAGTTACATTTACTTTGGTAAGATACAGACATCAATACTGGAAAACTCTCTAACCGTCATCTTCATGACAATCCATGCCGGTTTCGGGGAGAGAAATCAAGATTTGGTTTACAAACACAATAATTACGAAAATATCAAAAATATTAAGCGGGTTGAACTTTTCTTGACACTTCTCACAGAAACAGAGCTGGGATTTCCCGTTTACGGATTTTGGGGATTTCACAGATTTCACTAGTTGTTCTGCAGTTTGTAAATTCAACGGAACACCATAAAACTGTATCCGTGAAATCTGCAAAGTTTTTCGCGGGTGTTTTCTGCAGATTTTTCCGTCATTTTTAAATAATCTCAGACATTGATACAACTTCCGTCAATATGTTCAAAACTGACTTTGTTTTTAAAATTTTCGAAGCAAACATCTGCATAAAATATCTGTAAGAGCTAATAATTCCATTGCCGCCGACGAAAAATATAACTTTTCTAATCGACTTTTTAAAAATGATTTTTAAAAAACGAGTTTCCTTCGAAAATGCCTCAAATGATGAATTTCATAAGACTGTTTGTTTCACACTACAAAATTTAGATAAAGAACCTCTTTGCACTTTTATACTGAAATTTCGGAGTTTCACTGAAACAGGCATATTTCTTTTCCAACTAACGGCAGAATTCTAAATTTTCAGCTATAACCAGAGGGCACCAGAGCAAAATTTT</canonical>
            <polymorphic>AGTCCTGAAAGACAGAAGTTATTTCAAGTGATGACAGTTGTCACTGGAACATTTCGAAACATGACACGTACCCATTCCTTTCAAAAGGCCAACTGTTGTTTGGATACACCGGAGAGCTGGAGAACAAAGAACATGGTTGATTTCAATGCCGTTGTCACGTAGAGCACGTCCTGAAAATGGGTAACAGGAGATTAGGTAACGGGAGAAGAGTTAATTTGAAGTTATTTTAATAATCTAACTGATGAAAATTTGAAAAAATTTCAGAAGCGACCTGAGTGGGCATTCCTAAAACTAGTTACATTTACTTTGGTAAGATACAGACATCAATACTGGAAAACTCTCTAACCGTCATCTTCATGACAATCCATGCCGGTTTCGGGGAGAGAAATCAAGATTTGGTTTACAAACACAATAATTACGAAAATATCAAAAATATTAAGCGGGTTGAACTTTTCTTGACACTTCTCACAGAAACAGAGCTGGGATTTCCCGTTTACGGRTTTTGGGGATTTCACAGATTTCACTAGTTGTTCTGCAGTTTGTAAATTCAACGGAACACCATAAAACTGTATCCGTGAAATCTGCAAAGTTTTTCGCGGGTGTTTTCTGCAGATTTTTCCGTCATTTTTAAATAATCTCAGACATTGATACAACTTCCGTCAATATGTTCAAAACTGACTTTGTTTTTAAAATTTTCGAAGCAAACATCTGCATAAAATATCTGTAAGAGCTAATAATTCCATTGCCGCCGACGAAAAATATAACTTTTCTAATCGACTTTTTAAAAATGATTTTTAAAAAACGAGTTTCCTTCGAAAATGCCTCAAATGATGAATTTCATAAGACTGTTTGTTTCACACTACAAAATTTAGATAAAGAACCTCTTTGCACTTTTATACTGAAATTTCGGAGTTTCACTGAAACAGGCATATTTCTTTTCCAACTAACGGCAGAATTCTAAATTTTCAGCTATAACCAGAGGGCACCAGAGCAAAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAATCAAGATTTGGTTTACAA</pcr_primer_p1>
		<pcr_primer_p2>ATTTAAAAATGACGGAAAAATCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAATCAAGATTTGGTTTACAAACACAATAATTACGAAAATATCAAAAATATTAAGCGGGTTGAACTTTTCTTGACACTTCTCACAGAAACAGAGCTGGGATTTCCCGTTTACGGATTTTGGGGATTTCACAGATTTCACTAGTTGTTCTGCAGTTTGTAAATTCAACGGAACACCATAAAACTGTATCCGTGAAATCTGCAAAGTTTTTCGCGGGTGTTTTCTGCAGATTTTTCCGTCATTTTTAAAT</canonical_amplicon>
		<polymorphic_amplicon>AGAAATCAAGATTTGGTTTACAAACACAATAATTACGAAAATATCAAAAATATTAAGCGGGTTGAACTTTTCTTGACACTTCTCACAGAAACAGAGCTGGGATTTCCCGTTTACGGRTTTTGGGGATTTCACAGATTTCACTAGTTGTTCTGCAGTTTGTAAATTCAACGGAACACCATAAAACTGTATCCGTGAAATCTGCAAAGTTTTTCGCGGGTGTTTTCTGCAGATTTTTCCGTCATTTTTAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1828</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>349130</contig_pos>
        <strand>+</strand>
        <context>CATGCCGGTT[C/T]CGGGGAGAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATACTGGAAAACTCTCTAACCGTCATCTTCATGACAATCCATGCCGGTT</left_flank>
        <right_flank>CGGGGAGAGAAATCAAGATTTGGTTTACAAACACAATAATTACGAAAATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTCTGACTGGGTATCCTAATTTATTCAAATCCTTTGGTGGAATCCAACATGGTCTTGCATATCTGGCCCACACCATCCATTCATATAATCCTGGCTCAACAGAAAACTGAAGACGTTTATCGAGTCCTGAAAGACAGAAGTTATTTCAAGTGATGACAGTTGTCACTGGAACATTTCGAAACATGACACGTACCCATTCCTTTCAAAAGGCCAACTGTTGTTTGGATACACCGGAGAGCTGGAGAACAAAGAACATGGTTGATTTCAATGCCGTTGTCACGTAGAGCACGTCCTGAAAATGGGTAACAGGAGATTAGGTAACGGGAGAAGAGTTAATTTGAAGTTATTTTAATAATCTAACTGATGAAAATTTGAAAAAATTTCAGAAGCGACCTGAGTGGGCATTCCTAAAACTAGTTACATTTACTTTGGTAAGATACAGACATCAATACTGGAAAACTCTCTAACCGTCATCTTCATGACAATCCATGCCGGTTTCGGGGAGAGAAATCAAGATTTGGTTTACAAACACAATAATTACGAAAATATCAAAAATATTAAGCGGGTTGAACTTTTCTTGACACTTCTCACAGAAACAGAGCTGGGATTTCCCGTTTACGGATTTTGGGGATTTCACAGATTTCACTAGTTGTTCTGCAGTTTGTAAATTCAACGGAACACCATAAAACTGTATCCGTGAAATCTGCAAAGTTTTTCGCGGGTGTTTTCTGCAGATTTTTCCGTCATTTTTAAATAATCTCAGACATTGATACAACTTCCGTCAATATGTTCAAAACTGACTTTGTTTTTAAAATTTTCGAAGCAAACATCTGCATAAAATATCTGTAAGAGCTAATAATTCCATTGCCGCCGACGAAAAATATAACTTTTCTAATCGACTTTTTAAAAATGATTTTTAAAAAACGAGTTTCCTTCGAAAATGCCTCAAATGATGAATTTCATAAGACTGTTTGTTTCACACTACAAAATTTAGATAA</canonical>
            <polymorphic>TTCTCTGACTGGGTATCCTAATTTATTCAAATCCTTTGGTGGAATCCAACATGGTCTTGCATATCTGGCCCACACCATCCATTCATATAATCCTGGCTCAACAGAAAACTGAAGACGTTTATCGAGTCCTGAAAGACAGAAGTTATTTCAAGTGATGACAGTTGTCACTGGAACATTTCGAAACATGACACGTACCCATTCCTTTCAAAAGGCCAACTGTTGTTTGGATACACCGGAGAGCTGGAGAACAAAGAACATGGTTGATTTCAATGCCGTTGTCACGTAGAGCACGTCCTGAAAATGGGTAACAGGAGATTAGGTAACGGGAGAAGAGTTAATTTGAAGTTATTTTAATAATCTAACTGATGAAAATTTGAAAAAATTTCAGAAGCGACCTGAGTGGGCATTCCTAAAACTAGTTACATTTACTTTGGTAAGATACAGACATCAATACTGGAAAACTCTCTAACCGTCATCTTCATGACAATCCATGCCGGTTYCGGGGAGAGAAATCAAGATTTGGTTTACAAACACAATAATTACGAAAATATCAAAAATATTAAGCGGGTTGAACTTTTCTTGACACTTCTCACAGAAACAGAGCTGGGATTTCCCGTTTACGGATTTTGGGGATTTCACAGATTTCACTAGTTGTTCTGCAGTTTGTAAATTCAACGGAACACCATAAAACTGTATCCGTGAAATCTGCAAAGTTTTTCGCGGGTGTTTTCTGCAGATTTTTCCGTCATTTTTAAATAATCTCAGACATTGATACAACTTCCGTCAATATGTTCAAAACTGACTTTGTTTTTAAAATTTTCGAAGCAAACATCTGCATAAAATATCTGTAAGAGCTAATAATTCCATTGCCGCCGACGAAAAATATAACTTTTCTAATCGACTTTTTAAAAATGATTTTTAAAAAACGAGTTTCCTTCGAAAATGCCTCAAATGATGAATTTCATAAGACTGTTTGTTTCACACTACAAAATTTAGATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAACGGGAGAAGAGTTAATTTG</pcr_primer_p1>
		<pcr_primer_p2>CCCGCTTAATATTTTTGATATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTAACGGGAGAAGAGTTAATTTGAAGTTATTTTAATAATCTAACTGATGAAAATTTGAAAAAATTTCAGAAGCGACCTGAGTGGGCATTCCTAAAACTAGTTACATTTACTTTGGTAAGATACAGACATCAATACTGGAAAACTCTCTAACCGTCATCTTCATGACAATCCATGCCGGTTTCGGGGAGAGAAATCAAGATTTGGTTTACAAACACAATAATTACGAAAATATCAAAAATATTAAGCGGG</canonical_amplicon>
		<polymorphic_amplicon>GTAACGGGAGAAGAGTTAATTTGAAGTTATTTTAATAATCTAACTGATGAAAATTTGAAAAAATTTCAGAAGCGACCTGAGTGGGCATTCCTAAAACTAGTTACATTTACTTTGGTAAGATACAGACATCAATACTGGAAAACTCTCTAACCGTCATCTTCATGACAATCCATGCCGGTTYCGGGGAGAGAAATCAAGATTTGGTTTACAAACACAATAATTACGAAAATATCAAAAATATTAAGCGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1829</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>351991</contig_pos>
        <strand>+</strand>
        <context>TCCGTATTCT[A/G]AAAAATCAAW</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGACTCATCAGGAATCATGTTGACGTAGTACTGCTGAGGTCCGTATTCT</left_flank>
        <right_flank>AAAAATCAATCTCCTAAATATCGGCATTTAGTAAGACACTACCTATGTTC</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTTTTTCCAACAGCGAATGAATGTTATTTGAAATATTTCAGTAGGAAGATGCTTGTGGTAAAATTTTTGAGTTTATTCAATAAGTTAATCTGAAAACACTCTACCCTCATAACATCAAAGTTTCTTGCTGTGCTCATTGGATGATGTTCTCCTGTTCGGACAGAAGTACTCTCAAAGGCTTACAAAACATAAGACTTATTGAACAGGCCGAAAAAAAAAGAAAAATATTCAGAATTTTTCCATACACTCAGTTGACCAGAAAGAATTTCATGAGTTTCATTGTTTTTCTTTTGTTAATTTTGCACTAAATCTACTATCTAAATTTCAGTTCTAGCCAATAACTAATTCGTCGGAGCGAATTCAATTGCATTTCAAATCCAACGAGTTTCATAAATACTTACCCCGTTATCGAAGCAACAAAAACGCAAGGAATATCAGCTCGATCCAACGACTCATCAGGAATCATGTTGACGTAGTACTGCTGAGGTCCGTATTCTAAAAAATCAATCTCCTAAATATCGGCATTTAGTAAGACACTACCTATGTTCTCTGAATCTGTGACCATAACAACAGAAGCGCCTGCTTTTTGTCCGTGAATTGCTTTTTCCGTGAACGAGCAACCTCTGAAAAGGTTTAATTATTCACAGGTTGAATTTTAGATAAGAAAACATACCCTCTTTCCATGAGAATCACTGTTGGAACGAAGATGATGTTACGAAGTGTGTCGCATCCGTTGATGGGATCAGCAAGAACCATATCCATGTGCTGTAATAAAGAAAATATACTTTACAGTTCATATTTTTCAAATCGAATCAAATTTTCTTTTTATTTTTATACGGAGTACCAGAATGATGACAGATTAGTCACCATTTATTGACTTTTTTCCATGCTGAGCATGTATCACGACTCCGTAATCAAAATTCATTCAGAATTTGAACACTAACCTTCATTGTTTTGTTGATTCCATCAGGAAAATGAGTTCCAAGCATGAACGCGTG</canonical>
            <polymorphic>TACTTTTTCCAACAGCGAATGAATGTTATTTGAAATATTTCAGTAGGAAGATGCTTGTGGTAAAATTTTTGAGTTTATTCAATAAGTTAATCTGAAAACACTCTACCCTCATAACATCAAAGTTTCTTGCTGTGCTCATTGGATGATGTTCTCCTGTTCGGACAGAAGTACTCTCAAAGGCTTACAAAACATAAGACTTATTGAACAGGCCGAAAAAAAAAGAAAAATATTCAGAATTTTTCCATACACTCAGTTGACCAGAAAGAATTTCATGAGTTTCATTGTTTTTCTTTTGTTAATTTTGCACTAAATCTACTATCTAAATTTCAGTTCTAGCCAATAACTAATTCGTCGGAGCGAATTCAATTGCATTTCAAATCCAACGAGTTTCATAAATACTTACCCCGTTATCGAAGCAACAAAAACGCAAGGAATATCAGCTCGATCCAACGACTCATCAGGAATCATGTTGACGTAGTACTGCTGAGGTCCGTATTCTRAAAAATCAATCTCCTAAATATCGGCATTTAGTAAGACACTACCTATGTTCTCTGAATCTGTGACCATAACAACAGAAGCGCCTGCTTTTTGTCCGTGAATTGCTTTTTCCGTGAACGAGCAACCTCTGAAAAGGTTTAATTATTCACAGGTTGAATTTTAGATAAGAAAACATACCCTCTTTCCATGAGAATCACTGTTGGAACGAAGATGATGTTACGAAGTGTGTCGCATCCGTTGATGGGATCAGCAAGAACCATATCCATGTGCTGTAATAAAGAAAATATACTTTACAGTTCATATTTTTCAAATCGAATCAAATTTTCTTTTTATTTTTATACGGAGTACCAGAATGATGACAGATTAGTCACCATTTATTGACTTTTTTCCATGCTGAGCATGTATCACGACTCCGTAATCAAAATTCATTCAGAATTTGAACACTAACCTTCATTGTTTTGTTGATTCCATCAGGAAAATGAGTTCCAAGCATGAACGCGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAAATTTCAGTTCTAGCCAATA</pcr_primer_p1>
		<pcr_primer_p2>GGTCACAGATTCAGAGAACATAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTAAATTTCAGTTCTAGCCAATAACTAATTCGTCGGAGCGAATTCAATTGCATTTCAAATCCAACGAGTTTCATAAATACTTACCCCGTTATCGAAGCAACAAAAACGCAAGGAATATCAGCTCGATCCAACGACTCATCAGGAATCATGTTGACGTAGTACTGCTGAGGTCCGTATTCTAAAAAATCAATCTCCTAAATATCGGCATTTAGTAAGACACTACCTATGTTCTCTGAATCTGTGACC</canonical_amplicon>
		<polymorphic_amplicon>TCTAAATTTCAGTTCTAGCCAATAACTAATTCGTCGGAGCGAATTCAATTGCATTTCAAATCCAACGAGTTTCATAAATACTTACCCCGTTATCGAAGCAACAAAAACGCAAGGAATATCAGCTCGATCCAACGACTCATCAGGAATCATGTTGACGTAGTACTGCTGAGGTCCGTATTCTRAAAAATCAATCTCCTAAATATCGGCATTTAGTAAGACACTACCTATGTTCTCTGAATCTGTGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1830</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>352001</contig_pos>
        <strand>+</strand>
        <context>RAAAAATCAA[A/T]CTCCTAAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGGAATCATGTTGACGTAGTACTGCTGAGGTCCGTATTCTAAAAAATCAA</left_flank>
        <right_flank>CTCCTAAATATCGGCATTTAGTAAGACACTACCTATGTTCTCTGAATCTG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAGCGAATGAATGTTATTTGAAATATTTCAGTAGGAAGATGCTTGTGGTAAAATTTTTGAGTTTATTCAATAAGTTAATCTGAAAACACTCTACCCTCATAACATCAAAGTTTCTTGCTGTGCTCATTGGATGATGTTCTCCTGTTCGGACAGAAGTACTCTCAAAGGCTTACAAAACATAAGACTTATTGAACAGGCCGAAAAAAAAAGAAAAATATTCAGAATTTTTCCATACACTCAGTTGACCAGAAAGAATTTCATGAGTTTCATTGTTTTTCTTTTGTTAATTTTGCACTAAATCTACTATCTAAATTTCAGTTCTAGCCAATAACTAATTCGTCGGAGCGAATTCAATTGCATTTCAAATCCAACGAGTTTCATAAATACTTACCCCGTTATCGAAGCAACAAAAACGCAAGGAATATCAGCTCGATCCAACGACTCATCAGGAATCATGTTGACGTAGTACTGCTGAGGTCCGTATTCTAAAAAATCAATCTCCTAAATATCGGCATTTAGTAAGACACTACCTATGTTCTCTGAATCTGTGACCATAACAACAGAAGCGCCTGCTTTTTGTCCGTGAATTGCTTTTTCCGTGAACGAGCAACCTCTGAAAAGGTTTAATTATTCACAGGTTGAATTTTAGATAAGAAAACATACCCTCTTTCCATGAGAATCACTGTTGGAACGAAGATGATGTTACGAAGTGTGTCGCATCCGTTGATGGGATCAGCAAGAACCATATCCATGTGCTGTAATAAAGAAAATATACTTTACAGTTCATATTTTTCAAATCGAATCAAATTTTCTTTTTATTTTTATACGGAGTACCAGAATGATGACAGATTAGTCACCATTTATTGACTTTTTTCCATGCTGAGCATGTATCACGACTCCGTAATCAAAATTCATTCAGAATTTGAACACTAACCTTCATTGTTTTGTTGATTCCATCAGGAAAATGAGTTCCAAGCATGAACGCGTGTTTCATTTGA</canonical>
            <polymorphic>AACAGCGAATGAATGTTATTTGAAATATTTCAGTAGGAAGATGCTTGTGGTAAAATTTTTGAGTTTATTCAATAAGTTAATCTGAAAACACTCTACCCTCATAACATCAAAGTTTCTTGCTGTGCTCATTGGATGATGTTCTCCTGTTCGGACAGAAGTACTCTCAAAGGCTTACAAAACATAAGACTTATTGAACAGGCCGAAAAAAAAAGAAAAATATTCAGAATTTTTCCATACACTCAGTTGACCAGAAAGAATTTCATGAGTTTCATTGTTTTTCTTTTGTTAATTTTGCACTAAATCTACTATCTAAATTTCAGTTCTAGCCAATAACTAATTCGTCGGAGCGAATTCAATTGCATTTCAAATCCAACGAGTTTCATAAATACTTACCCCGTTATCGAAGCAACAAAAACGCAAGGAATATCAGCTCGATCCAACGACTCATCAGGAATCATGTTGACGTAGTACTGCTGAGGTCCGTATTCTAAAAAATCAAWCTCCTAAATATCGGCATTTAGTAAGACACTACCTATGTTCTCTGAATCTGTGACCATAACAACAGAAGCGCCTGCTTTTTGTCCGTGAATTGCTTTTTCCGTGAACGAGCAACCTCTGAAAAGGTTTAATTATTCACAGGTTGAATTTTAGATAAGAAAACATACCCTCTTTCCATGAGAATCACTGTTGGAACGAAGATGATGTTACGAAGTGTGTCGCATCCGTTGATGGGATCAGCAAGAACCATATCCATGTGCTGTAATAAAGAAAATATACTTTACAGTTCATATTTTTCAAATCGAATCAAATTTTCTTTTTATTTTTATACGGAGTACCAGAATGATGACAGATTAGTCACCATTTATTGACTTTTTTCCATGCTGAGCATGTATCACGACTCCGTAATCAAAATTCATTCAGAATTTGAACACTAACCTTCATTGTTTTGTTGATTCCATCAGGAAAATGAGTTCCAAGCATGAACGCGTGTTTCATTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAAATTTCAGTTCTAGCCAATA</pcr_primer_p1>
		<pcr_primer_p2>GGTCACAGATTCAGAGAACATAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTAAATTTCAGTTCTAGCCAATAACTAATTCGTCGGAGCGAATTCAATTGCATTTCAAATCCAACGAGTTTCATAAATACTTACCCCGTTATCGAAGCAACAAAAACGCAAGGAATATCAGCTCGATCCAACGACTCATCAGGAATCATGTTGACGTAGTACTGCTGAGGTCCGTATTCTAAAAAATCAATCTCCTAAATATCGGCATTTAGTAAGACACTACCTATGTTCTCTGAATCTGTGACC</canonical_amplicon>
		<polymorphic_amplicon>TCTAAATTTCAGTTCTAGCCAATAACTAATTCGTCGGAGCGAATTCAATTGCATTTCAAATCCAACGAGTTTCATAAATACTTACCCCGTTATCGAAGCAACAAAAACGCAAGGAATATCAGCTCGATCCAACGACTCATCAGGAATCATGTTGACGTAGTACTGCTGAGGTCCGTATTCTAAAAAATCAAWCTCCTAAATATCGGCATTTAGTAAGACACTACCTATGTTCTCTGAATCTGTGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1831</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>352012</contig_pos>
        <strand>+</strand>
        <context>CTCCTAAATA[A/T]CSGCATTTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGACGTAGTACTGCTGAGGTCCGTATTCTAAAAAATCAATCTCCTAAATA</left_flank>
        <right_flank>CGGCATTTAGTAAGACACTACCTATGTTCTCTGAATCTGTGACCATAACA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGTTATTTGAAATATTTCAGTAGGAAGATGCTTGTGGTAAAATTTTTGAGTTTATTCAATAAGTTAATCTGAAAACACTCTACCCTCATAACATCAAAGTTTCTTGCTGTGCTCATTGGATGATGTTCTCCTGTTCGGACAGAAGTACTCTCAAAGGCTTACAAAACATAAGACTTATTGAACAGGCCGAAAAAAAAAGAAAAATATTCAGAATTTTTCCATACACTCAGTTGACCAGAAAGAATTTCATGAGTTTCATTGTTTTTCTTTTGTTAATTTTGCACTAAATCTACTATCTAAATTTCAGTTCTAGCCAATAACTAATTCGTCGGAGCGAATTCAATTGCATTTCAAATCCAACGAGTTTCATAAATACTTACCCCGTTATCGAAGCAACAAAAACGCAAGGAATATCAGCTCGATCCAACGACTCATCAGGAATCATGTTGACGTAGTACTGCTGAGGTCCGTATTCTAAAAAATCAATCTCCTAAATATCGGCATTTAGTAAGACACTACCTATGTTCTCTGAATCTGTGACCATAACAACAGAAGCGCCTGCTTTTTGTCCGTGAATTGCTTTTTCCGTGAACGAGCAACCTCTGAAAAGGTTTAATTATTCACAGGTTGAATTTTAGATAAGAAAACATACCCTCTTTCCATGAGAATCACTGTTGGAACGAAGATGATGTTACGAAGTGTGTCGCATCCGTTGATGGGATCAGCAAGAACCATATCCATGTGCTGTAATAAAGAAAATATACTTTACAGTTCATATTTTTCAAATCGAATCAAATTTTCTTTTTATTTTTATACGGAGTACCAGAATGATGACAGATTAGTCACCATTTATTGACTTTTTTCCATGCTGAGCATGTATCACGACTCCGTAATCAAAATTCATTCAGAATTTGAACACTAACCTTCATTGTTTTGTTGATTCCATCAGGAAAATGAGTTCCAAGCATGAACGCGTGTTTCATTTGATACGTATATGC</canonical>
            <polymorphic>AATGTTATTTGAAATATTTCAGTAGGAAGATGCTTGTGGTAAAATTTTTGAGTTTATTCAATAAGTTAATCTGAAAACACTCTACCCTCATAACATCAAAGTTTCTTGCTGTGCTCATTGGATGATGTTCTCCTGTTCGGACAGAAGTACTCTCAAAGGCTTACAAAACATAAGACTTATTGAACAGGCCGAAAAAAAAAGAAAAATATTCAGAATTTTTCCATACACTCAGTTGACCAGAAAGAATTTCATGAGTTTCATTGTTTTTCTTTTGTTAATTTTGCACTAAATCTACTATCTAAATTTCAGTTCTAGCCAATAACTAATTCGTCGGAGCGAATTCAATTGCATTTCAAATCCAACGAGTTTCATAAATACTTACCCCGTTATCGAAGCAACAAAAACGCAAGGAATATCAGCTCGATCCAACGACTCATCAGGAATCATGTTGACGTAGTACTGCTGAGGTCCGTATTCTAAAAAATCAATCTCCTAAATAWCGGCATTTAGTAAGACACTACCTATGTTCTCTGAATCTGTGACCATAACAACAGAAGCGCCTGCTTTTTGTCCGTGAATTGCTTTTTCCGTGAACGAGCAACCTCTGAAAAGGTTTAATTATTCACAGGTTGAATTTTAGATAAGAAAACATACCCTCTTTCCATGAGAATCACTGTTGGAACGAAGATGATGTTACGAAGTGTGTCGCATCCGTTGATGGGATCAGCAAGAACCATATCCATGTGCTGTAATAAAGAAAATATACTTTACAGTTCATATTTTTCAAATCGAATCAAATTTTCTTTTTATTTTTATACGGAGTACCAGAATGATGACAGATTAGTCACCATTTATTGACTTTTTTCCATGCTGAGCATGTATCACGACTCCGTAATCAAAATTCATTCAGAATTTGAACACTAACCTTCATTGTTTTGTTGATTCCATCAGGAAAATGAGTTCCAAGCATGAACGCGTGTTTCATTTGATACGTATATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAGTTCTAGCCAATAACTAATTC</pcr_primer_p1>
		<pcr_primer_p2>CTGTTGTTATGGTCACAGATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCAGTTCTAGCCAATAACTAATTCGTCGGAGCGAATTCAATTGCATTTCAAATCCAACGAGTTTCATAAATACTTACCCCGTTATCGAAGCAACAAAAACGCAAGGAATATCAGCTCGATCCAACGACTCATCAGGAATCATGTTGACGTAGTACTGCTGAGGTCCGTATTCTAAAAAATCAATCTCCTAAATATCGGCATTTAGTAAGACACTACCTATGTTCTCTGAATCTGTGACCATAACAACAG</canonical_amplicon>
		<polymorphic_amplicon>TTCAGTTCTAGCCAATAACTAATTCGTCGGAGCGAATTCAATTGCATTTCAAATCCAACGAGTTTCATAAATACTTACCCCGTTATCGAAGCAACAAAAACGCAAGGAATATCAGCTCGATCCAACGACTCATCAGGAATCATGTTGACGTAGTACTGCTGAGGTCCGTATTCTAAAAAATCAATCTCCTAAATAWCGGCATTTAGTAAGACACTACCTATGTTCTCTGAATCTGTGACCATAACAACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1832</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>352014</contig_pos>
        <strand>+</strand>
        <context>CCTAAATAWC[C/G]GCATTTAGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACGTAGTACTGCTGAGGTCCGTATTCTAAAAAATCAATCTCCTAAATATC</left_flank>
        <right_flank>GCATTTAGTAAGACACTACCTATGTTCTCTGAATCTGTGACCATAACAAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTATTTGAAATATTTCAGTAGGAAGATGCTTGTGGTAAAATTTTTGAGTTTATTCAATAAGTTAATCTGAAAACACTCTACCCTCATAACATCAAAGTTTCTTGCTGTGCTCATTGGATGATGTTCTCCTGTTCGGACAGAAGTACTCTCAAAGGCTTACAAAACATAAGACTTATTGAACAGGCCGAAAAAAAAAGAAAAATATTCAGAATTTTTCCATACACTCAGTTGACCAGAAAGAATTTCATGAGTTTCATTGTTTTTCTTTTGTTAATTTTGCACTAAATCTACTATCTAAATTTCAGTTCTAGCCAATAACTAATTCGTCGGAGCGAATTCAATTGCATTTCAAATCCAACGAGTTTCATAAATACTTACCCCGTTATCGAAGCAACAAAAACGCAAGGAATATCAGCTCGATCCAACGACTCATCAGGAATCATGTTGACGTAGTACTGCTGAGGTCCGTATTCTAAAAAATCAATCTCCTAAATATCGGCATTTAGTAAGACACTACCTATGTTCTCTGAATCTGTGACCATAACAACAGAAGCGCCTGCTTTTTGTCCGTGAATTGCTTTTTCCGTGAACGAGCAACCTCTGAAAAGGTTTAATTATTCACAGGTTGAATTTTAGATAAGAAAACATACCCTCTTTCCATGAGAATCACTGTTGGAACGAAGATGATGTTACGAAGTGTGTCGCATCCGTTGATGGGATCAGCAAGAACCATATCCATGTGCTGTAATAAAGAAAATATACTTTACAGTTCATATTTTTCAAATCGAATCAAATTTTCTTTTTATTTTTATACGGAGTACCAGAATGATGACAGATTAGTCACCATTTATTGACTTTTTTCCATGCTGAGCATGTATCACGACTCCGTAATCAAAATTCATTCAGAATTTGAACACTAACCTTCATTGTTTTGTTGATTCCATCAGGAAAATGAGTTCCAAGCATGAACGCGTGTTTCATTTGATACGTATATGCCA</canonical>
            <polymorphic>TGTTATTTGAAATATTTCAGTAGGAAGATGCTTGTGGTAAAATTTTTGAGTTTATTCAATAAGTTAATCTGAAAACACTCTACCCTCATAACATCAAAGTTTCTTGCTGTGCTCATTGGATGATGTTCTCCTGTTCGGACAGAAGTACTCTCAAAGGCTTACAAAACATAAGACTTATTGAACAGGCCGAAAAAAAAAGAAAAATATTCAGAATTTTTCCATACACTCAGTTGACCAGAAAGAATTTCATGAGTTTCATTGTTTTTCTTTTGTTAATTTTGCACTAAATCTACTATCTAAATTTCAGTTCTAGCCAATAACTAATTCGTCGGAGCGAATTCAATTGCATTTCAAATCCAACGAGTTTCATAAATACTTACCCCGTTATCGAAGCAACAAAAACGCAAGGAATATCAGCTCGATCCAACGACTCATCAGGAATCATGTTGACGTAGTACTGCTGAGGTCCGTATTCTAAAAAATCAATCTCCTAAATATCSGCATTTAGTAAGACACTACCTATGTTCTCTGAATCTGTGACCATAACAACAGAAGCGCCTGCTTTTTGTCCGTGAATTGCTTTTTCCGTGAACGAGCAACCTCTGAAAAGGTTTAATTATTCACAGGTTGAATTTTAGATAAGAAAACATACCCTCTTTCCATGAGAATCACTGTTGGAACGAAGATGATGTTACGAAGTGTGTCGCATCCGTTGATGGGATCAGCAAGAACCATATCCATGTGCTGTAATAAAGAAAATATACTTTACAGTTCATATTTTTCAAATCGAATCAAATTTTCTTTTTATTTTTATACGGAGTACCAGAATGATGACAGATTAGTCACCATTTATTGACTTTTTTCCATGCTGAGCATGTATCACGACTCCGTAATCAAAATTCATTCAGAATTTGAACACTAACCTTCATTGTTTTGTTGATTCCATCAGGAAAATGAGTTCCAAGCATGAACGCGTGTTTCATTTGATACGTATATGCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAAAAACGCAAGGAATATC</pcr_primer_p1>
		<pcr_primer_p2>TCTTATCTAAAATTCAACCTGTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACAAAAACGCAAGGAATATCAGCTCGATCCAACGACTCATCAGGAATCATGTTGACGTAGTACTGCTGAGGTCCGTATTCTAAAAAATCAATCTCCTAAATATCGGCATTTAGTAAGACACTACCTATGTTCTCTGAATCTGTGACCATAACAACAGAAGCGCCTGCTTTTTGTCCGTGAATTGCTTTTTCCGTGAACGAGCAACCTCTGAAAAGGTTTAATTATTCACAGGTTGAATTTTAGATAAGA</canonical_amplicon>
		<polymorphic_amplicon>AACAAAAACGCAAGGAATATCAGCTCGATCCAACGACTCATCAGGAATCATGTTGACGTAGTACTGCTGAGGTCCGTATTCTAAAAAATCAATCTCCTAAATATCSGCATTTAGTAAGACACTACCTATGTTCTCTGAATCTGTGACCATAACAACAGAAGCGCCTGCTTTTTGTCCGTGAATTGCTTTTTCCGTGAACGAGCAACCTCTGAAAAGGTTTAATTATTCACAGGTTGAATTTTAGATAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1833</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>355926</contig_pos>
        <strand>+</strand>
        <context>ATTCAAAAAA[A/G]TATTAGAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGAATATTGAAATCTTGAGTAATGATAAGTTTACTGAAATTCAAAAAA</left_flank>
        <right_flank>TATTAGAAAGTAATTTTTAGTGTTGAAAAATAATCAATTAGTTAAACTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTCCTCCCCTGAATGTATTGTGTGTCATGCACCTATGGATTTGTGACAAATAAGTTCCGGTGATTATGTGGTCCACTGAGGAGTGCGGTCCAGCTCGTGTGGTCCAAAACGGAAGCGGCCAGTCTTGTGAAATAAATGACTGATTCAGCAAGTATTGAATACAACATTATATCCGTTGAGAGATCAGAGGACCACAATGATCACACTTCCTGTACTCTGTATATCTGTCTTGACATATGAGCATACCTTCAGTTTATGAAAAACATAACAGAGTACAACTCCTTCAATGAAACTTTTTATCACAAAAAGGTGTTGTTAATGAGCTAAAAGTGCGCATTTTTCTAATTGACTAGGAATTAAATTTGAAAAATAGATTTAAATCTTCAAAATCTATATTTTTCGGATCAAAAACATCAAACTAAATCTTATACTCTTTGTAAATAAATATCTGAATATTGAAATCTTGAGTAATGATAAGTTTACTGAAATTCAAAAAAGTATTAGAAAGTAATTTTTAGTGTTGAAAAATAATCAATTAGTTAAACTGAATTGCTCTTACGGTTAAAAAAAGGATTCGGTAATTTACTGGATTTTTAAAATATTAATTTTATTGAGACAGTGTTTAGTCATCGGTATTCACGTTTTTCGTTTTTTTCTATGTGGCTATCGTGTTTCATAGAGGTTATCTATCGACGTGGGTTGAGACTGCGTAGCTCAGATGGTATCCTCCAACCTTGCAAGTTCAACTCGTCGAGGACCTTACATTGACTGAATTTGGAATTTTCTTAGTATTTTTAAAATGTTCTATGAAACTTTCGATCTTCGTTTAACAATTTTTCTGCTAGGTATGGAATTATACACCGAACCGATTCTTCGGGTTTTTTTTTCGCAAACTACTTGTGTTCTTCGATTACTATGAGAACTAAGTAATTCCATTCCACCGAACGGCCTTGCTCGCAGTCACTTCTTCGCATTTCCGACGGTTCGATTTCCACTCT</canonical>
            <polymorphic>GACTCCTCCCCTGAATGTATTGTGTGTCATGCACCTATGGATTTGTGACAAATAAGTTCCGGTGATTATGTGGTCCACTGAGGAGTGCGGTCCAGCTCGTGTGGTCCAAAACGGAAGCGGCCAGTCTTGTGAAATAAATGACTGATTCAGCAAGTATTGAATACAACATTATATCCGTTGAGAGATCAGAGGACCACAATGATCACACTTCCTGTACTCTGTATATCTGTCTTGACATATGAGCATACCTTCAGTTTATGAAAAACATAACAGAGTACAACTCCTTCAATGAAACTTTTTATCACAAAAAGGTGTTGTTAATGAGCTAAAAGTGCGCATTTTTCTAATTGACTAGGAATTAAATTTGAAAAATAGATTTAAATCTTCAAAATCTATATTTTTCGGATCAAAAACATCAAACTAAATCTTATACTCTTTGTAAATAAATATCTGAATATTGAAATCTTGAGTAATGATAAGTTTACTGAAATTCAAAAAARTATTAGAAAGTAATTTTTAGTGTTGAAAAATAATCAATTAGTTAAACTGAATTGCTCTTACGGTTAAAAAAAGGATTCGGTAATTTACTGGATTTTTAAAATATTAATTTTATTGAGACAGTGTTTAGTCATCGGTATTCACGTTTTTCGTTTTTTTCTATGTGGCTATCGTGTTTCATAGAGGTTATCTATCGACGTGGGTTGAGACTGCGTAGCTCAGATGGTATCCTCCAACCTTGCAAGTTCAACTCGTCGAGGACCTTACATTGACTGAATTTGGAATTTTCTTAGTATTTTTAAAATGTTCTATGAAACTTTCGATCTTCGTTTAACAATTTTTCTGCTAGGTATGGAATTATACACCGAACCGATTCTTCGGGTTTTTTTTTCGCAAACTACTTGTGTTCTTCGATTACTATGAGAACTAAGTAATTCCATTCCACCGAACGGCCTTGCTCGCAGTCACTTCTTCGCATTTCCGACGGTTCGATTTCCACTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATCAAAAACATCAAACTAAATC</pcr_primer_p1>
		<pcr_primer_p2>GTGAATACCGATGACTAAACACT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GGATCAAAAACATCAAACTAAATCTTATACTCTTTGTAAATAAATATCTGAATATTGAAATCTTGAGTAATGATAAGTTTACTGAAATTCAAAAAAGTATTAGAAAGTAATTTTTAGTGTTGAAAAATAATCAATTAGTTAAACTGAATTGCTCTTACGGTTAAAAAAAGGATTCGGTAATTTACTGGATTTTTAAAATATTAATTTTATTGAGACAGTGTTTAGTCATCGGTATTCAC</canonical_amplicon>
		<polymorphic_amplicon>GGATCAAAAACATCAAACTAAATCTTATACTCTTTGTAAATAAATATCTGAATATTGAAATCTTGAGTAATGATAAGTTTACTGAAATTCAAAAAARTATTAGAAAGTAATTTTTAGTGTTGAAAAATAATCAATTAGTTAAACTGAATTGCTCTTACGGTTAAAAAAAGGATTCGGTAATTTACTGGATTTTTAAAATATTAATTTTATTGAGACAGTGTTTAGTCATCGGTATTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1834</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>355867</contig_pos>
        <strand>+</strand>
        <context>TACTCTTTGT[A/G]AATAAATATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCTATATTTTTCGGATCAAAAACATCAAACTAAATCTTATACTCTTTGT</left_flank>
        <right_flank>AATAAATATCTGAATATTGAAATCTTGAGTAATGATAAGTTTACTGAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCGAAGAGAATGTGACTAATATTGAGAAACAAAAAAAATGAATAGAGCTCCTTTCTCGGACTCCTCCCCTGAATGTATTGTGTGTCATGCACCTATGGATTTGTGACAAATAAGTTCCGGTGATTATGTGGTCCACTGAGGAGTGCGGTCCAGCTCGTGTGGTCCAAAACGGAAGCGGCCAGTCTTGTGAAATAAATGACTGATTCAGCAAGTATTGAATACAACATTATATCCGTTGAGAGATCAGAGGACCACAATGATCACACTTCCTGTACTCTGTATATCTGTCTTGACATATGAGCATACCTTCAGTTTATGAAAAACATAACAGAGTACAACTCCTTCAATGAAACTTTTTATCACAAAAAGGTGTTGTTAATGAGCTAAAAGTGCGCATTTTTCTAATTGACTAGGAATTAAATTTGAAAAATAGATTTAAATCTTCAAAATCTATATTTTTCGGATCAAAAACATCAAACTAAATCTTATACTCTTTGTAAATAAATATCTGAATATTGAAATCTTGAGTAATGATAAGTTTACTGAAATTCAAAAAAGTATTAGAAAGTAATTTTTAGTGTTGAAAAATAATCAATTAGTTAAACTGAATTGCTCTTACGGTTAAAAAAAGGATTCGGTAATTTACTGGATTTTTAAAATATTAATTTTATTGAGACAGTGTTTAGTCATCGGTATTCACGTTTTTCGTTTTTTTCTATGTGGCTATCGTGTTTCATAGAGGTTATCTATCGACGTGGGTTGAGACTGCGTAGCTCAGATGGTATCCTCCAACCTTGCAAGTTCAACTCGTCGAGGACCTTACATTGACTGAATTTGGAATTTTCTTAGTATTTTTAAAATGTTCTATGAAACTTTCGATCTTCGTTTAACAATTTTTCTGCTAGGTATGGAATTATACACCGAACCGATTCTTCGGGTTTTTTTTTCGCAAACTACTTGTGTTCTTCGATTACTATGAGAACTAAGTAATTCCATTCC</canonical>
            <polymorphic>TCCGAAGAGAATGTGACTAATATTGAGAAACAAAAAAAATGAATAGAGCTCCTTTCTCGGACTCCTCCCCTGAATGTATTGTGTGTCATGCACCTATGGATTTGTGACAAATAAGTTCCGGTGATTATGTGGTCCACTGAGGAGTGCGGTCCAGCTCGTGTGGTCCAAAACGGAAGCGGCCAGTCTTGTGAAATAAATGACTGATTCAGCAAGTATTGAATACAACATTATATCCGTTGAGAGATCAGAGGACCACAATGATCACACTTCCTGTACTCTGTATATCTGTCTTGACATATGAGCATACCTTCAGTTTATGAAAAACATAACAGAGTACAACTCCTTCAATGAAACTTTTTATCACAAAAAGGTGTTGTTAATGAGCTAAAAGTGCGCATTTTTCTAATTGACTAGGAATTAAATTTGAAAAATAGATTTAAATCTTCAAAATCTATATTTTTCGGATCAAAAACATCAAACTAAATCTTATACTCTTTGTRAATAAATATCTGAATATTGAAATCTTGAGTAATGATAAGTTTACTGAAATTCAAAAAAGTATTAGAAAGTAATTTTTAGTGTTGAAAAATAATCAATTAGTTAAACTGAATTGCTCTTACGGTTAAAAAAAGGATTCGGTAATTTACTGGATTTTTAAAATATTAATTTTATTGAGACAGTGTTTAGTCATCGGTATTCACGTTTTTCGTTTTTTTCTATGTGGCTATCGTGTTTCATAGAGGTTATCTATCGACGTGGGTTGAGACTGCGTAGCTCAGATGGTATCCTCCAACCTTGCAAGTTCAACTCGTCGAGGACCTTACATTGACTGAATTTGGAATTTTCTTAGTATTTTTAAAATGTTCTATGAAACTTTCGATCTTCGTTTAACAATTTTTCTGCTAGGTATGGAATTATACACCGAACCGATTCTTCGGGTTTTTTTTTCGCAAACTACTTGTGTTCTTCGATTACTATGAGAACTAAGTAATTCCATTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAGAGTACAACTCCTTCAATG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAATTTCAGTAAACTTATCA</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>AACAGAGTACAACTCCTTCAATGAAACTTTTTATCACAAAAAGGTGTTGTTAATGAGCTAAAAGTGCGCATTTTTCTAATTGACTAGGAATTAAATTTGAAAAATAGATTTAAATCTTCAAAATCTATATTTTTCGGATCAAAAACATCAAACTAAATCTTATACTCTTTGTAAATAAATATCTGAATATTGAAATCTTGAGTAATGATAAGTTTACTGAAATTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AACAGAGTACAACTCCTTCAATGAAACTTTTTATCACAAAAAGGTGTTGTTAATGAGCTAAAAGTGCGCATTTTTCTAATTGACTAGGAATTAAATTTGAAAAATAGATTTAAATCTTCAAAATCTATATTTTTCGGATCAAAAACATCAAACTAAATCTTATACTCTTTGTRAATAAATATCTGAATATTGAAATCTTGAGTAATGATAAGTTTACTGAAATTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1835</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>355763</contig_pos>
        <strand>+</strand>
        <context>TAAAAGTGCG[A/C]ATTTTTCTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAATGAAACTTTTTATCACAAAAAGGTGTTGTTAATGAGCTAAAAGTGCG</left_flank>
        <right_flank>ATTTTTCTAATTGACTAGGAATTAAATTTGAAAAATAGATTTAAATCTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCTTCACATGATAACTGGGGCTGGAAAAATAAGATTTGCTATCAGTTTCATTTCAATTCACAAAAAAGAACTCACAGTATGCAGCATGTCTAGAAACTTCTGTCCGAAGAGAATGTGACTAATATTGAGAAACAAAAAAAATGAATAGAGCTCCTTTCTCGGACTCCTCCCCTGAATGTATTGTGTGTCATGCACCTATGGATTTGTGACAAATAAGTTCCGGTGATTATGTGGTCCACTGAGGAGTGCGGTCCAGCTCGTGTGGTCCAAAACGGAAGCGGCCAGTCTTGTGAAATAAATGACTGATTCAGCAAGTATTGAATACAACATTATATCCGTTGAGAGATCAGAGGACCACAATGATCACACTTCCTGTACTCTGTATATCTGTCTTGACATATGAGCATACCTTCAGTTTATGAAAAACATAACAGAGTACAACTCCTTCAATGAAACTTTTTATCACAAAAAGGTGTTGTTAATGAGCTAAAAGTGCGCATTTTTCTAATTGACTAGGAATTAAATTTGAAAAATAGATTTAAATCTTCAAAATCTATATTTTTCGGATCAAAAACATCAAACTAAATCTTATACTCTTTGTAAATAAATATCTGAATATTGAAATCTTGAGTAATGATAAGTTTACTGAAATTCAAAAAAGTATTAGAAAGTAATTTTTAGTGTTGAAAAATAATCAATTAGTTAAACTGAATTGCTCTTACGGTTAAAAAAAGGATTCGGTAATTTACTGGATTTTTAAAATATTAATTTTATTGAGACAGTGTTTAGTCATCGGTATTCACGTTTTTCGTTTTTTTCTATGTGGCTATCGTGTTTCATAGAGGTTATCTATCGACGTGGGTTGAGACTGCGTAGCTCAGATGGTATCCTCCAACCTTGCAAGTTCAACTCGTCGAGGACCTTACATTGACTGAATTTGGAATTTTCTTAGTATTTTTAAAATGTTCTATGAAACTTTCGATCTTCGTTTAACAATT</canonical>
            <polymorphic>TCTCTTCACATGATAACTGGGGCTGGAAAAATAAGATTTGCTATCAGTTTCATTTCAATTCACAAAAAAGAACTCACAGTATGCAGCATGTCTAGAAACTTCTGTCCGAAGAGAATGTGACTAATATTGAGAAACAAAAAAAATGAATAGAGCTCCTTTCTCGGACTCCTCCCCTGAATGTATTGTGTGTCATGCACCTATGGATTTGTGACAAATAAGTTCCGGTGATTATGTGGTCCACTGAGGAGTGCGGTCCAGCTCGTGTGGTCCAAAACGGAAGCGGCCAGTCTTGTGAAATAAATGACTGATTCAGCAAGTATTGAATACAACATTATATCCGTTGAGAGATCAGAGGACCACAATGATCACACTTCCTGTACTCTGTATATCTGTCTTGACATATGAGCATACCTTCAGTTTATGAAAAACATAACAGAGTACAACTCCTTCAATGAAACTTTTTATCACAAAAAGGTGTTGTTAATGAGCTAAAAGTGCGMATTTTTCTAATTGACTAGGAATTAAATTTGAAAAATAGATTTAAATCTTCAAAATCTATATTTTTCGGATCAAAAACATCAAACTAAATCTTATACTCTTTGTAAATAAATATCTGAATATTGAAATCTTGAGTAATGATAAGTTTACTGAAATTCAAAAAAGTATTAGAAAGTAATTTTTAGTGTTGAAAAATAATCAATTAGTTAAACTGAATTGCTCTTACGGTTAAAAAAAGGATTCGGTAATTTACTGGATTTTTAAAATATTAATTTTATTGAGACAGTGTTTAGTCATCGGTATTCACGTTTTTCGTTTTTTTCTATGTGGCTATCGTGTTTCATAGAGGTTATCTATCGACGTGGGTTGAGACTGCGTAGCTCAGATGGTATCCTCCAACCTTGCAAGTTCAACTCGTCGAGGACCTTACATTGACTGAATTTGGAATTTTCTTAGTATTTTTAAAATGTTCTATGAAACTTTCGATCTTCGTTTAACAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCGCA</site>
                <isoschizomers>
                    <enzyme>Acc16I</enzyme>
                    <enzyme>AviII</enzyme>
                    <enzyme>FspI</enzyme>
                    <enzyme>MstI</enzyme>
                    <enzyme>NsbI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RTGCGCAY</site>
                <isoschizomers>
                    <enzyme>FspAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATTATATCCGTTGAGAGATCA</pcr_primer_p1>
		<pcr_primer_p2>TGTTTTTGATCCGAAAAATATAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATTATATCCGTTGAGAGATCAGAGGACCACAATGATCACACTTCCTGTACTCTGTATATCTGTCTTGACATATGAGCATACCTTCAGTTTATGAAAAACATAACAGAGTACAACTCCTTCAATGAAACTTTTTATCACAAAAAGGTGTTGTTAATGAGCTAAAAGTGCGCATTTTTCTAATTGACTAGGAATTAAATTTGAAAAATAGATTTAAATCTTCAAAATCTATATTTTTCGGATCAAAAACA</canonical_amplicon>
		<polymorphic_amplicon>ACATTATATCCGTTGAGAGATCAGAGGACCACAATGATCACACTTCCTGTACTCTGTATATCTGTCTTGACATATGAGCATACCTTCAGTTTATGAAAAACATAACAGAGTACAACTCCTTCAATGAAACTTTTTATCACAAAAAGGTGTTGTTAATGAGCTAAAAGTGCGMATTTTTCTAATTGACTAGGAATTAAATTTGAAAAATAGATTTAAATCTTCAAAATCTATATTTTTCGGATCAAAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1836</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>355738</contig_pos>
        <strand>+</strand>
        <context>TCACAAAAAG[C/G]TGTTGTTAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAACATAACAGAGTACAACTCCTTCAATGAAACTTTTTATCACAAAAAG</left_flank>
        <right_flank>TGTTGTTAATGAGCTAAAAGTGCGCATTTTTCTAATTGACTAGGAATTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTCCAGCATGCATTCTAGAAGATTCTCTTCACATGATAACTGGGGCTGGAAAAATAAGATTTGCTATCAGTTTCATTTCAATTCACAAAAAAGAACTCACAGTATGCAGCATGTCTAGAAACTTCTGTCCGAAGAGAATGTGACTAATATTGAGAAACAAAAAAAATGAATAGAGCTCCTTTCTCGGACTCCTCCCCTGAATGTATTGTGTGTCATGCACCTATGGATTTGTGACAAATAAGTTCCGGTGATTATGTGGTCCACTGAGGAGTGCGGTCCAGCTCGTGTGGTCCAAAACGGAAGCGGCCAGTCTTGTGAAATAAATGACTGATTCAGCAAGTATTGAATACAACATTATATCCGTTGAGAGATCAGAGGACCACAATGATCACACTTCCTGTACTCTGTATATCTGTCTTGACATATGAGCATACCTTCAGTTTATGAAAAACATAACAGAGTACAACTCCTTCAATGAAACTTTTTATCACAAAAAGGTGTTGTTAATGAGCTAAAAGTGCGCATTTTTCTAATTGACTAGGAATTAAATTTGAAAAATAGATTTAAATCTTCAAAATCTATATTTTTCGGATCAAAAACATCAAACTAAATCTTATACTCTTTGTAAATAAATATCTGAATATTGAAATCTTGAGTAATGATAAGTTTACTGAAATTCAAAAAAGTATTAGAAAGTAATTTTTAGTGTTGAAAAATAATCAATTAGTTAAACTGAATTGCTCTTACGGTTAAAAAAAGGATTCGGTAATTTACTGGATTTTTAAAATATTAATTTTATTGAGACAGTGTTTAGTCATCGGTATTCACGTTTTTCGTTTTTTTCTATGTGGCTATCGTGTTTCATAGAGGTTATCTATCGACGTGGGTTGAGACTGCGTAGCTCAGATGGTATCCTCCAACCTTGCAAGTTCAACTCGTCGAGGACCTTACATTGACTGAATTTGGAATTTTCTTAGTATTTTTAAAATGTTCTATGA</canonical>
            <polymorphic>AGTTCCAGCATGCATTCTAGAAGATTCTCTTCACATGATAACTGGGGCTGGAAAAATAAGATTTGCTATCAGTTTCATTTCAATTCACAAAAAAGAACTCACAGTATGCAGCATGTCTAGAAACTTCTGTCCGAAGAGAATGTGACTAATATTGAGAAACAAAAAAAATGAATAGAGCTCCTTTCTCGGACTCCTCCCCTGAATGTATTGTGTGTCATGCACCTATGGATTTGTGACAAATAAGTTCCGGTGATTATGTGGTCCACTGAGGAGTGCGGTCCAGCTCGTGTGGTCCAAAACGGAAGCGGCCAGTCTTGTGAAATAAATGACTGATTCAGCAAGTATTGAATACAACATTATATCCGTTGAGAGATCAGAGGACCACAATGATCACACTTCCTGTACTCTGTATATCTGTCTTGACATATGAGCATACCTTCAGTTTATGAAAAACATAACAGAGTACAACTCCTTCAATGAAACTTTTTATCACAAAAAGSTGTTGTTAATGAGCTAAAAGTGCGCATTTTTCTAATTGACTAGGAATTAAATTTGAAAAATAGATTTAAATCTTCAAAATCTATATTTTTCGGATCAAAAACATCAAACTAAATCTTATACTCTTTGTAAATAAATATCTGAATATTGAAATCTTGAGTAATGATAAGTTTACTGAAATTCAAAAAAGTATTAGAAAGTAATTTTTAGTGTTGAAAAATAATCAATTAGTTAAACTGAATTGCTCTTACGGTTAAAAAAAGGATTCGGTAATTTACTGGATTTTTAAAATATTAATTTTATTGAGACAGTGTTTAGTCATCGGTATTCACGTTTTTCGTTTTTTTCTATGTGGCTATCGTGTTTCATAGAGGTTATCTATCGACGTGGGTTGAGACTGCGTAGCTCAGATGGTATCCTCCAACCTTGCAAGTTCAACTCGTCGAGGACCTTACATTGACTGAATTTGGAATTTTCTTAGTATTTTTAAAATGTTCTATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>188 113 101 97 68 65 54 43 33 28 26 23 20 18 17 14 14 14 10 10 9 9 8 7 5 2 2 2</canonical_bands>
                <polymorphic_bands>188 113 101 97 68 65 54 43 33 30 28 26 23 18 17 14 14 14 10 9 9 8 7 5 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATTATATCCGTTGAGAGATCA</pcr_primer_p1>
		<pcr_primer_p2>TGTTTTTGATCCGAAAAATATAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATTATATCCGTTGAGAGATCAGAGGACCACAATGATCACACTTCCTGTACTCTGTATATCTGTCTTGACATATGAGCATACCTTCAGTTTATGAAAAACATAACAGAGTACAACTCCTTCAATGAAACTTTTTATCACAAAAAGGTGTTGTTAATGAGCTAAAAGTGCGCATTTTTCTAATTGACTAGGAATTAAATTTGAAAAATAGATTTAAATCTTCAAAATCTATATTTTTCGGATCAAAAACA</canonical_amplicon>
		<polymorphic_amplicon>ACATTATATCCGTTGAGAGATCAGAGGACCACAATGATCACACTTCCTGTACTCTGTATATCTGTCTTGACATATGAGCATACCTTCAGTTTATGAAAAACATAACAGAGTACAACTCCTTCAATGAAACTTTTTATCACAAAAAGSTGTTGTTAATGAGCTAAAAGTGCGCATTTTTCTAATTGACTAGGAATTAAATTTGAAAAATAGATTTAAATCTTCAAAATCTATATTTTTCGGATCAAAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1837</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>355680</contig_pos>
        <strand>+</strand>
        <context>CATACCTTCA[G/T]TTTATGAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CACACTTCCTGTACTCTGTATATCTGTCTTGACATATGAGCATACCTTCA</left_flank>
        <right_flank>TTTATGAAAAACATAACAGAGTACAACTCCTTCAATGAAACTTTTTATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGATTCAATTTCCCTTGTATTGTGTCTCCCCAACTATAACAAGCATCCTTTTTGGTTAGTTCCAGCATGCATTCTAGAAGATTCTCTTCACATGATAACTGGGGCTGGAAAAATAAGATTTGCTATCAGTTTCATTTCAATTCACAAAAAAGAACTCACAGTATGCAGCATGTCTAGAAACTTCTGTCCGAAGAGAATGTGACTAATATTGAGAAACAAAAAAAATGAATAGAGCTCCTTTCTCGGACTCCTCCCCTGAATGTATTGTGTGTCATGCACCTATGGATTTGTGACAAATAAGTTCCGGTGATTATGTGGTCCACTGAGGAGTGCGGTCCAGCTCGTGTGGTCCAAAACGGAAGCGGCCAGTCTTGTGAAATAAATGACTGATTCAGCAAGTATTGAATACAACATTATATCCGTTGAGAGATCAGAGGACCACAATGATCACACTTCCTGTACTCTGTATATCTGTCTTGACATATGAGCATACCTTCAGTTTATGAAAAACATAACAGAGTACAACTCCTTCAATGAAACTTTTTATCACAAAAAGGTGTTGTTAATGAGCTAAAAGTGCGCATTTTTCTAATTGACTAGGAATTAAATTTGAAAAATAGATTTAAATCTTCAAAATCTATATTTTTCGGATCAAAAACATCAAACTAAATCTTATACTCTTTGTAAATAAATATCTGAATATTGAAATCTTGAGTAATGATAAGTTTACTGAAATTCAAAAAAGTATTAGAAAGTAATTTTTAGTGTTGAAAAATAATCAATTAGTTAAACTGAATTGCTCTTACGGTTAAAAAAAGGATTCGGTAATTTACTGGATTTTTAAAATATTAATTTTATTGAGACAGTGTTTAGTCATCGGTATTCACGTTTTTCGTTTTTTTCTATGTGGCTATCGTGTTTCATAGAGGTTATCTATCGACGTGGGTTGAGACTGCGTAGCTCAGATGGTATCCTCCAACCTTGCAAGTTCAACTCGTC</canonical>
            <polymorphic>CAGATTCAATTTCCCTTGTATTGTGTCTCCCCAACTATAACAAGCATCCTTTTTGGTTAGTTCCAGCATGCATTCTAGAAGATTCTCTTCACATGATAACTGGGGCTGGAAAAATAAGATTTGCTATCAGTTTCATTTCAATTCACAAAAAAGAACTCACAGTATGCAGCATGTCTAGAAACTTCTGTCCGAAGAGAATGTGACTAATATTGAGAAACAAAAAAAATGAATAGAGCTCCTTTCTCGGACTCCTCCCCTGAATGTATTGTGTGTCATGCACCTATGGATTTGTGACAAATAAGTTCCGGTGATTATGTGGTCCACTGAGGAGTGCGGTCCAGCTCGTGTGGTCCAAAACGGAAGCGGCCAGTCTTGTGAAATAAATGACTGATTCAGCAAGTATTGAATACAACATTATATCCGTTGAGAGATCAGAGGACCACAATGATCACACTTCCTGTACTCTGTATATCTGTCTTGACATATGAGCATACCTTCAKTTTATGAAAAACATAACAGAGTACAACTCCTTCAATGAAACTTTTTATCACAAAAAGGTGTTGTTAATGAGCTAAAAGTGCGCATTTTTCTAATTGACTAGGAATTAAATTTGAAAAATAGATTTAAATCTTCAAAATCTATATTTTTCGGATCAAAAACATCAAACTAAATCTTATACTCTTTGTAAATAAATATCTGAATATTGAAATCTTGAGTAATGATAAGTTTACTGAAATTCAAAAAAGTATTAGAAAGTAATTTTTAGTGTTGAAAAATAATCAATTAGTTAAACTGAATTGCTCTTACGGTTAAAAAAAGGATTCGGTAATTTACTGGATTTTTAAAATATTAATTTTATTGAGACAGTGTTTAGTCATCGGTATTCACGTTTTTCGTTTTTTTCTATGTGGCTATCGTGTTTCATAGAGGTTATCTATCGACGTGGGTTGAGACTGCGTAGCTCAGATGGTATCCTCCAACCTTGCAAGTTCAACTCGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATTATATCCGTTGAGAGATCA</pcr_primer_p1>
		<pcr_primer_p2>TGTTTTTGATCCGAAAAATATAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATTATATCCGTTGAGAGATCAGAGGACCACAATGATCACACTTCCTGTACTCTGTATATCTGTCTTGACATATGAGCATACCTTCAGTTTATGAAAAACATAACAGAGTACAACTCCTTCAATGAAACTTTTTATCACAAAAAGGTGTTGTTAATGAGCTAAAAGTGCGCATTTTTCTAATTGACTAGGAATTAAATTTGAAAAATAGATTTAAATCTTCAAAATCTATATTTTTCGGATCAAAAACA</canonical_amplicon>
		<polymorphic_amplicon>ACATTATATCCGTTGAGAGATCAGAGGACCACAATGATCACACTTCCTGTACTCTGTATATCTGTCTTGACATATGAGCATACCTTCAKTTTATGAAAAACATAACAGAGTACAACTCCTTCAATGAAACTTTTTATCACAAAAAGGTGTTGTTAATGAGCTAAAAGTGCGCATTTTTCTAATTGACTAGGAATTAAATTTGAAAAATAGATTTAAATCTTCAAAATCTATATTTTTCGGATCAAAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1838</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>462314</contig_pos>
        <strand>+</strand>
        <context>TCTTCTCTGT[A/T]TCACCTATCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATAAAAGAAAAGGCTCTTGTCCTTTTGCTCTTTTGGAACCTCTTCTCTGT</left_flank>
        <right_flank>TCACCTATCTCTTTGCGATAGGAGAGGCGCACTGAAGAATGTGTCCCCTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTCTTTTTTCTCCCTCTCTACCCGCTAAAATCTTTGCTCTAGGGGTGCAGTAAAAGCACATCGTTGTACATGAATGAATAAATTCATCTTCTTTTTCCCATTCTTGCTGCTCATCCTGAAAACCCTTGCGGTTTTGAGAATCACATATCCTACAAAATGAACAAAAAAAAGAGAAAAGAAGGAAGAAAGGATGCGTCACAAAGCCACCAAATTCCAATTCGATTAAGAAGGTTGATTCGAGACCTTTCCGGGCGCGAGAGACTCAATTCAATTAAAATAAACGTTTTGTTAGTCGTAGCGAGAGCAAAAGATTTGTCCATTTTTTGTTTGACGGGGACGCGACATCAACGATCGCAAATTGGATACGACGAAGGTTGATGTTCAATTCTACACAACCAGAGGAGATTCTGATTTCAATGATCGCTTCTAGAAATGTCTTCCGACAAATAAAAGAAAAGGCTCTTGTCCTTTTGCTCTTTTGGAACCTCTTCTCTGTTTCACCTATCTCTTTGCGATAGGAGAGGCGCACTGAAGAATGTGTCCCCTGTGGAATAGCTAGCCAACAAAACACTACGCCTACATTTTTGTGTGGATGTATGCTTTCAAAAAGAGCTAAAGTATGGGAAACAAGTATACGGTTGACGGGTTAATTAAAACAAGCGACCAAAGTACGGAAGCACTTGTTTTAAATGAGCTTTTTCCTTGTTGAGAATTTTAATTAAAGAGTGAAAGTGCCAAACAAAATATTTTTGTTAAGCAGTTCTTCTGAAATTCATGTAGTTTGCACTGGAAATAATGGTTTCAATTGGCCTGCTATAATACTTCCTTGTTGAGGCACAAATACATCTCTAGGAAACAGCTTGTCAAGTTTCTTCCGATTGTTCCACTTCCTTTGGCGTCGTGAGCAAGTTCAATGAGATTTCAGGTTGAACCAAATCCGACCCTACATGAATTGTGGAATTACGACTTTCGAAAATTGATCTCTCCTCCGCGGTTA</canonical>
            <polymorphic>TTGTTCTTTTTTCTCCCTCTCTACCCGCTAAAATCTTTGCTCTAGGGGTGCAGTAAAAGCACATCGTTGTACATGAATGAATAAATTCATCTTCTTTTTCCCATTCTTGCTGCTCATCCTGAAAACCCTTGCGGTTTTGAGAATCACATATCCTACAAAATGAACAAAAAAAAGAGAAAAGAAGGAAGAAAGGATGCGTCACAAAGCCACCAAATTCCAATTCGATTAAGAAGGTTGATTCGAGACCTTTCCGGGCGCGAGAGACTCAATTCAATTAAAATAAACGTTTTGTTAGTCGTAGCGAGAGCAAAAGATTTGTCCATTTTTTGTTTGACGGGGACGCGACATCAACGATCGCAAATTGGATACGACGAAGGTTGATGTTCAATTCTACACAACCAGAGGAGATTCTGATTTCAATGATCGCTTCTAGAAATGTCTTCCGACAAATAAAAGAAAAGGCTCTTGTCCTTTTGCTCTTTTGGAACCTCTTCTCTGTWTCACCTATCTCTTTGCGATAGGAGAGGCGCACTGAAGAATGTGTCCCCTGTGGAATAGCTAGCCAACAAAACACTACGCCTACATTTTTGTGTGGATGTATGCTTTCAAAAAGAGCTAAAGTATGGGAAACAAGTATACGGTTGACGGGTTAATTAAAACAAGCGACCAAAGTACGGAAGCACTTGTTTTAAATGAGCTTTTTCCTTGTTGAGAATTTTAATTAAAGAGTGAAAGTGCCAAACAAAATATTTTTGTTAAGCAGTTCTTCTGAAATTCATGTAGTTTGCACTGGAAATAATGGTTTCAATTGGCCTGCTATAATACTTCCTTGTTGAGGCACAAATACATCTCTAGGAAACAGCTTGTCAAGTTTCTTCCGATTGTTCCACTTCCTTTGGCGTCGTGAGCAAGTTCAATGAGATTTCAGGTTGAACCAAATCCGACCCTACATGAATTGTGGAATTACGACTTTCGAAAATTGATCTCTCCTCCGCGGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCTACACAACCAGAGGAGAT</pcr_primer_p1>
		<pcr_primer_p2>ACTTGTTTCCCATACTTTAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTCTACACAACCAGAGGAGATTCTGATTTCAATGATCGCTTCTAGAAATGTCTTCCGACAAATAAAAGAAAAGGCTCTTGTCCTTTTGCTCTTTTGGAACCTCTTCTCTGTTTCACCTATCTCTTTGCGATAGGAGAGGCGCACTGAAGAATGTGTCCCCTGTGGAATAGCTAGCCAACAAAACACTACGCCTACATTTTTGTGTGGATGTATGCTTTCAAAAAGAGCTAAAGTATGGGAAACAAGT</canonical_amplicon>
		<polymorphic_amplicon>AATTCTACACAACCAGAGGAGATTCTGATTTCAATGATCGCTTCTAGAAATGTCTTCCGACAAATAAAAGAAAAGGCTCTTGTCCTTTTGCTCTTTTGGAACCTCTTCTCTGTWTCACCTATCTCTTTGCGATAGGAGAGGCGCACTGAAGAATGTGTCCCCTGTGGAATAGCTAGCCAACAAAACACTACGCCTACATTTTTGTGTGGATGTATGCTTTCAAAAAGAGCTAAAGTATGGGAAACAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1839</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>461992</contig_pos>
        <strand></strand>
        <context>AAAAAAGAGA[A/G]AAGAAGGAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTGCGGTTTTGAGAATCACATATCCTACAAAATGAACAAAAAAAAGAGA</left_flank>
        <right_flank>AAGAAGGAAGAAAGGATGCGTCACAAAGCCACCAAATTCCAATTCGATTA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGATTGTGTTTGCCTACATTTTCCAGCGGAAAAGAATGAGTCAGCAGGCAGCAACAGGTAGAGAGATGCCTATCTGCTTTTGTGTGTTTTCTGCTACCCCACTTACTATCGGTATCCATCTCTCCAAAGATGAAATCCAATTCGACACGGGTGGGCTCAACATTGATGGTTCTCAAAAGTGCAGCGATCTCATTACGTGAAAGACGACCGTCTTTGTCGACGTCAAGAAGGTCGAATGTCTCCGAGAGTTCTGAAAATCGTCTTTTTTTTTGTTTAAAAATTGTACAGCTTCTTTCTCCCGCCAAAACATTTGTTAGTATGTTGTTCTTTTTTCTCCCTCTCTACCCGCTAAAATCTTTGCTCTAGGGGTGCAGTAAAAGCACATCGTTGTACATGAATGAATAAATTCATCTTCTTTTTCCCATTCTTGCTGCTCATCCTGAAAACCCTTGCGGTTTTGAGAATCACATATCCTACAAAATGAACAAAAAAAAGAGAAAAGAAGGAAGAAAGGATGCGTCACAAAGCCACCAAATTCCAATTCGATTAAGAAGGTTGATTCGAGACCTTTCCGGGCGCGAGAGACTCAATTCAATTAAAATAAACGTTTTGTTAGTCGTAGCGAGAGCAAAAGATTTGTCCATTTTTTGTTTGACGGGGACGCGACATCAACGATCGCAAATTGGATACGACGAAGGTTGATGTTCAATTCTACACAACCAGAGGAGATTCTGATTTCAATGATCGCTTCTAGAAATGTCTTCCGACAAATAAAAGAAAAGGCTCTTGTCCTTTTGCTCTTTTGGAACCTCTTCTCTGTTTCACCTATCTCTTTGCGATAGGAGAGGCGCACTGAAGAATGTGTCCCCTGTGGAATAGCTAGCCAACAAAACACTACGCCTACATTTTTGTGTGGATGTATGCTTTCAAAAAGAGCTAAAGTATGGGAAACAAGTATACGGTTGACGGGTTAATTAAAACAAGCGACCAAAGTACGGA</canonical>
            <polymorphic>TTGATTGTGTTTGCCTACATTTTCCAGCGGAAAAGAATGAGTCAGCAGGCAGCAACAGGTAGAGAGATGCCTATCTGCTTTTGTGTGTTTTCTGCTACCCCACTTACTATCGGTATCCATCTCTCCAAAGATGAAATCCAATTCGACACGGGTGGGCTCAACATTGATGGTTCTCAAAAGTGCAGCGATCTCATTACGTGAAAGACGACCGTCTTTGTCGACGTCAAGAAGGTCGAATGTCTCCGAGAGTTCTGAAAATCGTCTTTTTTTTTGTTTAAAAATTGTACAGCTTCTTTCTCCCGCCAAAACATTTGTTAGTATGTTGTTCTTTTTTCTCCCTCTCTACCCGCTAAAATCTTTGCTCTAGGGGTGCAGTAAAAGCACATCGTTGTACATGAATGAATAAATTCATCTTCTTTTTCCCATTCTTGCTGCTCATCCTGAAAACCCTTGCGGTTTTGAGAATCACATATCCTACAAAATGAACAAAAAAAAGAGARAAGAAGGAAGAAAGGATGCGTCACAAAGCCACCAAATTCCAATTCGATTAAGAAGGTTGATTCGAGACCTTTCCGGGCGCGAGAGACTCAATTCAATTAAAATAAACGTTTTGTTAGTCGTAGCGAGAGCAAAAGATTTGTCCATTTTTTGTTTGACGGGGACGCGACATCAACGATCGCAAATTGGATACGACGAAGGTTGATGTTCAATTCTACACAACCAGAGGAGATTCTGATTTCAATGATCGCTTCTAGAAATGTCTTCCGACAAATAAAAGAAAAGGCTCTTGTCCTTTTGCTCTTTTGGAACCTCTTCTCTGTTTCACCTATCTCTTTGCGATAGGAGAGGCGCACTGAAGAATGTGTCCCCTGTGGAATAGCTAGCCAACAAAACACTACGCCTACATTTTTGTGTGGATGTATGCTTTCAAAAAGAGCTAAAGTATGGGAAACAAGTATACGGTTGACGGGTTAATTAAAACAAGCGACCAAAGTACGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATCGTTGTACATGAATGAAT</pcr_primer_p1>
		<pcr_primer_p2>CTCTCGCTACGACTAACAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACATCGTTGTACATGAATGAATAAATTCATCTTCTTTTTCCCATTCTTGCTGCTCATCCTGAAAACCCTTGCGGTTTTGAGAATCACATATCCTACAAAATGAACAAAAAAAAGAGAAAAGAAGGAAGAAAGGATGCGTCACAAAGCCACCAAATTCCAATTCGATTAAGAAGGTTGATTCGAGACCTTTCCGGGCGCGAGAGACTCAATTCAATTAAAATAAACGTTTTGTTAGTCGTAGCGAGAG</canonical_amplicon>
		<polymorphic_amplicon>ACATCGTTGTACATGAATGAATAAATTCATCTTCTTTTTCCCATTCTTGCTGCTCATCCTGAAAACCCTTGCGGTTTTGAGAATCACATATCCTACAAAATGAACAAAAAAAAGAGARAAGAAGGAAGAAAGGATGCGTCACAAAGCCACCAAATTCCAATTCGATTAAGAAGGTTGATTCGAGACCTTTCCGGGCGCGAGAGACTCAATTCAATTAAAATAAACGTTTTGTTAGTCGTAGCGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1840</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>529539</contig_pos>
        <strand>+</strand>
        <context>GGAGCTCAGC[A/G]AGCCTAGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGAAACTAAAATATTGAATGATTGAATAAACCGTACAAAGGAGCTCAGC</left_flank>
        <right_flank>AGCCTAGAAGGTCTAGCAACACTCACCGAGCCTGACGGGCAGTCTTCAAG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTAAGGTGGTGCCAGACGAAACAACCTTCTTTCAAAGATAAAGAAAATCTCGAAAATTAATTTTTTATAACAAAGTGTTTATTGAACAAACAACGAACAAGGCAACAAATTTAGATGACTCCAATCTTGTTGGCGACGTCGAGGGCATCGTAGTCAGCGGTGAGGCGGACGTAGGCCTTCTTCTGTTGGAGTGGGGTGATGAGAGTGTTGACCTGAAAGTGACATTTTTGTATTCCAGTATTTTGCATTTGACCACAAACCTTGAGGGCCTGGACGTTATAGAGCTTGTGGACGGCATCCTTGATCTGGTACTTGTTGGCGTCGTTGTTGACGATGAAGACAAGAGTGTTGTGCTCTTCGATCTTCTTCATGGCCGACTCAGTCGTCAATGGGTGTTGGATGATGCGGTAGTGGTCCATCTTGGAGGCCTTTGGAGCCGACTTGCGTGGGAAACTAAAATATTGAATGATTGAATAAACCGTACAAAGGAGCTCAGCGAGCCTAGAAGGTCTAGCAACACTCACCGAGCCTGACGGGCAGTCTTCAAGGTGACTGGGCGACGGAAGTGGACGGAGGTGCGGACTTGACGCTTGTGGGAGGTGCGTTGTCCCTTGGCGACCTTCTTCTTGGCGTCGAGAGCCTTGGCGGTCTTAGCTTGAGCGCTTGGAGCCATTTTACCCTGAAGAACTGATTCGATTAAGAGGTTTGAATGAAAAAAGAGGATGAAATAAAAAATAATTAAAATTTAGGTACTTCGCGGTATGTATAACCGGTGAAAAAAATTTTGCAGAAATAAATGGACGACACAACATATAGAATTCAATAAAACATATTGGTTTCTCTTTGAAATGCAAATGAACGAGATTTGATATGACAGAAGTAAAGTTTTCACAACATTAAGGCATCAATGGTAGACTTGAGATCAAGTTAGATTAAAAAATGAGATGCTAATATAAATATTAAGTTAGTCCTATTATGTTAGTAATTAATTTGGTAAA</canonical>
            <polymorphic>GGTTAAGGTGGTGCCAGACGAAACAACCTTCTTTCAAAGATAAAGAAAATCTCGAAAATTAATTTTTTATAACAAAGTGTTTATTGAACAAACAACGAACAAGGCAACAAATTTAGATGACTCCAATCTTGTTGGCGACGTCGAGGGCATCGTAGTCAGCGGTGAGGCGGACGTAGGCCTTCTTCTGTTGGAGTGGGGTGATGAGAGTGTTGACCTGAAAGTGACATTTTTGTATTCCAGTATTTTGCATTTGACCACAAACCTTGAGGGCCTGGACGTTATAGAGCTTGTGGACGGCATCCTTGATCTGGTACTTGTTGGCGTCGTTGTTGACGATGAAGACAAGAGTGTTGTGCTCTTCGATCTTCTTCATGGCCGACTCAGTCGTCAATGGGTGTTGGATGATGCGGTAGTGGTCCATCTTGGAGGCCTTTGGAGCCGACTTGCGTGGGAAACTAAAATATTGAATGATTGAATAAACCGTACAAAGGAGCTCAGCRAGCCTAGAAGGTCTAGCAACACTCACCGAGCCTGACGGGCAGTCTTCAAGGTGACTGGGCGACGGAAGTGGACGGAGGTGCGGACTTGACGCTTGTGGGAGGTGCGTTGTCCCTTGGCGACCTTCTTCTTGGCGTCGAGAGCCTTGGCGGTCTTAGCTTGAGCGCTTGGAGCCATTTTACCCTGAAGAACTGATTCGATTAAGAGGTTTGAATGAAAAAAGAGGATGAAATAAAAAATAATTAAAATTTAGGTACTTCGCGGTATGTATAACCGGTGAAAAAAATTTTGCAGAAATAAATGGACGACACAACATATAGAATTCAATAAAACATATTGGTTTCTCTTTGAAATGCAAATGAACGAGATTTGATATGACAGAAGTAAAGTTTTCACAACATTAAGGCATCAATGGTAGACTTGAGATCAAGTTAGATTAAAAAATGAGATGCTAATATAAATATTAAGTTAGTCCTATTATGTTAGTAATTAATTTGGTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGGAAACTAAAATATTGAATG</pcr_primer_p1>
		<pcr_primer_p2>AACCTCTTAATCGAATCAGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>GTGGGAAACTAAAATATTGAATGATTGAATAAACCGTACAAAGGAGCTCAGCGAGCCTAGAAGGTCTAGCAACACTCACCGAGCCTGACGGGCAGTCTTCAAGGTGACTGGGCGACGGAAGTGGACGGAGGTGCGGACTTGACGCTTGTGGGAGGTGCGTTGTCCCTTGGCGACCTTCTTCTTGGCGTCGAGAGCCTTGGCGGTCTTAGCTTGAGCGCTTGGAGCCATTTTACCCTGAAGAACTGATTCGATTAAGAGGTT</canonical_amplicon>
		<polymorphic_amplicon>GTGGGAAACTAAAATATTGAATGATTGAATAAACCGTACAAAGGAGCTCAGCRAGCCTAGAAGGTCTAGCAACACTCACCGAGCCTGACGGGCAGTCTTCAAGGTGACTGGGCGACGGAAGTGGACGGAGGTGCGGACTTGACGCTTGTGGGAGGTGCGTTGTCCCTTGGCGACCTTCTTCTTGGCGTCGAGAGCCTTGGCGGTCTTAGCTTGAGCGCTTGGAGCCATTTTACCCTGAAGAACTGATTCGATTAAGAGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1841</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>529724</contig_pos>
        <strand>+</strand>
        <context>TTTTACCCTG[A/T]AGAACTGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGAGAGCCTTGGCGGTCTTAGCTTGAGCGCTTGGAGCCATTTTACCCTG</left_flank>
        <right_flank>AGAACTGATTCGATTAAGAGGTTTGAATGAAAAAAGAGGATGAAATAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTGGAGTGGGGTGATGAGAGTGTTGACCTGAAAGTGACATTTTTGTATTCCAGTATTTTGCATTTGACCACAAACCTTGAGGGCCTGGACGTTATAGAGCTTGTGGACGGCATCCTTGATCTGGTACTTGTTGGCGTCGTTGTTGACGATGAAGACAAGAGTGTTGTGCTCTTCGATCTTCTTCATGGCCGACTCAGTCGTCAATGGGTGTTGGATGATGCGGTAGTGGTCCATCTTGGAGGCCTTTGGAGCCGACTTGCGTGGGAAACTAAAATATTGAATGATTGAATAAACCGTACAAAGGAGCTCAGCGAGCCTAGAAGGTCTAGCAACACTCACCGAGCCTGACGGGCAGTCTTCAAGGTGACTGGGCGACGGAAGTGGACGGAGGTGCGGACTTGACGCTTGTGGGAGGTGCGTTGTCCCTTGGCGACCTTCTTCTTGGCGTCGAGAGCCTTGGCGGTCTTAGCTTGAGCGCTTGGAGCCATTTTACCCTGAAGAACTGATTCGATTAAGAGGTTTGAATGAAAAAAGAGGATGAAATAAAAAATAATTAAAATTTAGGTACTTCGCGGTATGTATAACCGGTGAAAAAAATTTTGCAGAAATAAATGGACGACACAACATATAGAATTCAATAAAACATATTGGTTTCTCTTTGAAATGCAAATGAACGAGATTTGATATGACAGAAGTAAAGTTTTCACAACATTAAGGCATCAATGGTAGACTTGAGATCAAGTTAGATTAAAAAATGAGATGCTAATATAAATATTAAGTTAGTCCTATTATGTTAGTAATTAATTTGGTAAATGATAATAAGTTAATAATTTACAATTTATACAATTCAAAATATTATATATTCGACTCTCGCTCCAGATACTGAGTTCCACCTCCTCTGATTCTAGAATGAGGGGATCTCGTCCTGGAAGATACCGTTCCATCGGATACTGAACGGATTCCAAAGTCGACGAGTTGATGGCTCTCGCCCTTGTAGA</canonical>
            <polymorphic>TGTTGGAGTGGGGTGATGAGAGTGTTGACCTGAAAGTGACATTTTTGTATTCCAGTATTTTGCATTTGACCACAAACCTTGAGGGCCTGGACGTTATAGAGCTTGTGGACGGCATCCTTGATCTGGTACTTGTTGGCGTCGTTGTTGACGATGAAGACAAGAGTGTTGTGCTCTTCGATCTTCTTCATGGCCGACTCAGTCGTCAATGGGTGTTGGATGATGCGGTAGTGGTCCATCTTGGAGGCCTTTGGAGCCGACTTGCGTGGGAAACTAAAATATTGAATGATTGAATAAACCGTACAAAGGAGCTCAGCGAGCCTAGAAGGTCTAGCAACACTCACCGAGCCTGACGGGCAGTCTTCAAGGTGACTGGGCGACGGAAGTGGACGGAGGTGCGGACTTGACGCTTGTGGGAGGTGCGTTGTCCCTTGGCGACCTTCTTCTTGGCGTCGAGAGCCTTGGCGGTCTTAGCTTGAGCGCTTGGAGCCATTTTACCCTGWAGAACTGATTCGATTAAGAGGTTTGAATGAAAAAAGAGGATGAAATAAAAAATAATTAAAATTTAGGTACTTCGCGGTATGTATAACCGGTGAAAAAAATTTTGCAGAAATAAATGGACGACACAACATATAGAATTCAATAAAACATATTGGTTTCTCTTTGAAATGCAAATGAACGAGATTTGATATGACAGAAGTAAAGTTTTCACAACATTAAGGCATCAATGGTAGACTTGAGATCAAGTTAGATTAAAAAATGAGATGCTAATATAAATATTAAGTTAGTCCTATTATGTTAGTAATTAATTTGGTAAATGATAATAAGTTAATAATTTACAATTTATACAATTCAAAATATTATATATTCGACTCTCGCTCCAGATACTGAGTTCCACCTCCTCTGATTCTAGAATGAGGGGATCTCGTCCTGGAAGATACCGTTCCATCGGATACTGAACGGATTCCAAAGTCGACGAGTTGATGGCTCTCGCCCTTGTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGAAGGTCTAGCAACACTCAC</pcr_primer_p1>
		<pcr_primer_p2>GTTATACATACCGCGAAGTACC</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>CTAGAAGGTCTAGCAACACTCACCGAGCCTGACGGGCAGTCTTCAAGGTGACTGGGCGACGGAAGTGGACGGAGGTGCGGACTTGACGCTTGTGGGAGGTGCGTTGTCCCTTGGCGACCTTCTTCTTGGCGTCGAGAGCCTTGGCGGTCTTAGCTTGAGCGCTTGGAGCCATTTTACCCTGAAGAACTGATTCGATTAAGAGGTTTGAATGAAAAAAGAGGATGAAATAAAAAATAATTAAAATTTAGGTACTTCGCGGTATGTATAAC</canonical_amplicon>
		<polymorphic_amplicon>CTAGAAGGTCTAGCAACACTCACCGAGCCTGACGGGCAGTCTTCAAGGTGACTGGGCGACGGAAGTGGACGGAGGTGCGGACTTGACGCTTGTGGGAGGTGCGTTGTCCCTTGGCGACCTTCTTCTTGGCGTCGAGAGCCTTGGCGGTCTTAGCTTGAGCGCTTGGAGCCATTTTACCCTGWAGAACTGATTCGATTAAGAGGTTTGAATGAAAAAAGAGGATGAAATAAAAAATAATTAAAATTTAGGTACTTCGCGGTATGTATAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1865</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>543538</contig_pos>
        <strand>+</strand>
        <context>TTCACAGCTC[A/C]CACCCCACCG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCTTTTTATGCAGATGTTGTCCAGTTTTTTCTTGACACCTTCACAGCTC</left_flank>
        <right_flank>CACCCCACCGATCCACACACTAGCCCCCAATTGTCTTCTTCAGAAAAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTGTCGAGGTGAGGACGACGTGTACAAGGATCAGTATTGATACGCAGACTGATACTTGAAGGGGAAAGGATATTTGATCTGTCTCCTGTTTTATTATATCTTTGATCCGACCAACCCTTCAGTTTCCCTGTTTCTCAGATCATTTTTCAAACAAAAACGTAGAATAGACTGTTATTATAATGTATTATAGTTATTATAATCCATCCCCTCAGAAATATAATTGTACATTAGTGTCAAACCACTTGTGGATCCAACAAGTTTGATCACTACCAGCCACCCATCACTTACTTTTTGTGTTCTTGTTTCCAGGGCCCGCGGAGAAATTGCAGCACCAAGACAATACACACCCAGCTATCAGGTTTTCGAATCTAGCCGTACGCAAATTACAACAGCCGATCGTCGATATTAGTAGAGAGTGTTCGTCCTGTTTTTTTTGTTTCTCTATATTGCTTTTTATGCAGATGTTGTCCAGTTTTTTCTTGACACCTTCACAGCTCCCACCCCACCGATCCACACACTAGCCCCCAATTGTCTTCTTCAGAAAAAAAAATATGTGCCTTCTTTTTACGAACTTTCCATTCAATGCCTCGCTTTGTGTTTGACATCTTATCTTTTAGGTATTTATCTTATTGTTCGATTCACGTTCAATTCTTGTCTGATCTTTATATGAACTTCAATGTGTTACGAATTTTCATCAAAAATAGCAACATGATGTTGGTATGAACTTTGATATGTTTTTGGGTTGGTAGTCATAAGAGGATTTGGCGGAAGCATTTGGAAGAAAACCTCTTTCGATTGGTTTCCGGTTTCGAAATAGGAGAAGCTGACAATAAAAGGTTGGCTGAATCCATTTTCAAAAAATTAATTTTTCACCTGTATTTTTTAAAAAAGCGCGCTCTTGAGTTTTGCAAAAGTTTTTTGAAAGTTACATCTGGTTTCTGGTTTTTATTCTATAAAAATTGAAAATCAAGGGATCGATTTTTGAGTGATTTATCAGG</canonical>
            <polymorphic>CTTTGTCGAGGTGAGGACGACGTGTACAAGGATCAGTATTGATACGCAGACTGATACTTGAAGGGGAAAGGATATTTGATCTGTCTCCTGTTTTATTATATCTTTGATCCGACCAACCCTTCAGTTTCCCTGTTTCTCAGATCATTTTTCAAACAAAAACGTAGAATAGACTGTTATTATAATGTATTATAGTTATTATAATCCATCCCCTCAGAAATATAATTGTACATTAGTGTCAAACCACTTGTGGATCCAACAAGTTTGATCACTACCAGCCACCCATCACTTACTTTTTGTGTTCTTGTTTCCAGGGCCCGCGGAGAAATTGCAGCACCAAGACAATACACACCCAGCTATCAGGTTTTCGAATCTAGCCGTACGCAAATTACAACAGCCGATCGTCGATATTAGTAGAGAGTGTTCGTCCTGTTTTTTTTGTTTCTCTATATTGCTTTTTATGCAGATGTTGTCCAGTTTTTTCTTGACACCTTCACAGCTCMCACCCCACCGATCCACACACTAGCCCCCAATTGTCTTCTTCAGAAAAAAAAATATGTGCCTTCTTTTTACGAACTTTCCATTCAATGCCTCGCTTTGTGTTTGACATCTTATCTTTTAGGTATTTATCTTATTGTTCGATTCACGTTCAATTCTTGTCTGATCTTTATATGAACTTCAATGTGTTACGAATTTTCATCAAAAATAGCAACATGATGTTGGTATGAACTTTGATATGTTTTTGGGTTGGTAGTCATAAGAGGATTTGGCGGAAGCATTTGGAAGAAAACCTCTTTCGATTGGTTTCCGGTTTCGAAATAGGAGAAGCTGACAATAAAAGGTTGGCTGAATCCATTTTCAAAAAATTAATTTTTCACCTGTATTTTTTAAAAAAGCGCGCTCTTGAGTTTTGCAAAAGTTTTTTGAAAGTTACATCTGGTTTCTGGTTTTTATTCTATAAAAATTGAAAATCAAGGGATCGATTTTTGAGTGATTTATCAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTGCTTTTTATGCAGATGTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTCGTAACACATTGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATTGCTTTTTATGCAGATGTTGTCCAGTTTTTTCTTGACACCTTCACAGCTCCCACCCCACCGATCCACACACTAGCCCCCAATTGTCTTCTTCAGAAAAAAAAATATGTGCCTTCTTTTTACGAACTTTCCATTCAATGCCTCGCTTTGTGTTTGACATCTTATCTTTTAGGTATTTATCTTATTGTTCGATTCACGTTCAATTCTTGTCTGATCTTTATATGAACTTCAATGTGTTACGAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>ATATTGCTTTTTATGCAGATGTTGTCCAGTTTTTTCTTGACACCTTCACAGCTCMCACCCCACCGATCCACACACTAGCCCCCAATTGTCTTCTTCAGAAAAAAAAATATGTGCCTTCTTTTTACGAACTTTCCATTCAATGCCTCGCTTTGTGTTTGACATCTTATCTTTTAGGTATTTATCTTATTGTTCGATTCACGTTCAATTCTTGTCTGATCTTTATATGAACTTCAATGTGTTACGAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1866</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>545934</contig_pos>
        <strand>+</strand>
        <context>GGGCGGGAGR[G/T]GACCCCGTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCTTGCAGTTTAGGACAGTCTGTCTGGGCAAACACGCGGCGGGCGGGAGG</left_flank>
        <right_flank>GACCCCGTCGTTTGTTTTGCGTTTATTTTTTTGCCATTTTCCGTCACCAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATATATTAACGAATCGCCACCGCCAAACACTTACTGGTAATCTCCTCCTATTTCTCTCTCTCTTTTTTCATTTCCATTTTCTCCATTTAATTCTATTCCTACTCATTTGCAACCAACGGGACTATGAGATACGGTCTTCTTGCATTTGGCCCTCTCATATCTTTGAAGATCTTTTCTTCATTGTCATTTCTAACCAGACATGTTCGTCATCCCAGCGGTCACGAGAGACAATGTGGAGAAGAACAACGGGGGGCGAGTAAAAAGAAGAATTGGGAGGCGAGGAGGAAAGGCGGGTCGGGCCGGGACACATTGAGTGTGTCTGTCGGGTTGACCCTTGCGATGCCGTTGCAACCGCTCAATGCAACACTGCTCTACTGATAACCTAGCCACGAAACATCTTCAGTTATCCCAACGCAATTTCTCACTTTTTCCCGCCAAAATTTTCTCGCTTGCAGTTTAGGACAGTCTGTCTGGGCAAACACGCGGCGGGCGGGAGGGGACCCCGTCGTTTGTTTTGCGTTTATTTTTTTGCCATTTTCCGTCACCAATTGTGTTCCTTTTAAATAAAAAATGAATCACCTTTTGGGCGGTTCTATGTCCCTTTTCTCCTTTTTTTGCAAACTGCCAACACAACTTTTATTATTCCACCTCGTCGTTTTTACTATCCTCTTGTTTTTCTGAACTATCATTTTTCAGCCATGTTCTGGTGGTGGGATGCTGAGTATTGGCTGCCACGTGGCGTCTCTTGGGCAGATATGTACAACAAAACGACGGAACCGGGTTTTATGTATCCACACTACTCACACTTATGGATGACAGTTCTTACCGGTATTTCACTTATTGTAAGTTTTTTTTCTATTTTTTTTCTAAAAACTTGCCGCTGAGTTCTAAACTATTCAAAACCTTGGAAAGTAAAAAATTATGAATTTCAGATCTATCGCCTCGTCTTTGAAAACTACGTCTTCGTTCCACTTGCCTATTTTCTCAGCAGAAAAAAT</canonical>
            <polymorphic>AAATATATTAACGAATCGCCACCGCCAAACACTTACTGGTAATCTCCTCCTATTTCTCTCTCTCTTTTTTCATTTCCATTTTCTCCATTTAATTCTATTCCTACTCATTTGCAACCAACGGGACTATGAGATACGGTCTTCTTGCATTTGGCCCTCTCATATCTTTGAAGATCTTTTCTTCATTGTCATTTCTAACCAGACATGTTCGTCATCCCAGCGGTCACGAGAGACAATGTGGAGAAGAACAACGGGGGGCGAGTAAAAAGAAGAATTGGGAGGCGAGGAGGAAAGGCGGGTCGGGCCGGGACACATTGAGTGTGTCTGTCGGGTTGACCCTTGCGATGCCGTTGCAACCGCTCAATGCAACACTGCTCTACTGATAACCTAGCCACGAAACATCTTCAGTTATCCCAACGCAATTTCTCACTTTTTCCCGCCAAAATTTTCTCGCTTGCAGTTTAGGACAGTCTGTCTGGGCAAACACGCGGCGGGCGGGAGGKGACCCCGTCGTTTGTTTTGCGTTTATTTTTTTGCCATTTTCCGTCACCAATTGTGTTCCTTTTAAATAAAAAATGAATCACCTTTTGGGCGGTTCTATGTCCCTTTTCTCCTTTTTTTGCAAACTGCCAACACAACTTTTATTATTCCACCTCGTCGTTTTTACTATCCTCTTGTTTTTCTGAACTATCATTTTTCAGCCATGTTCTGGTGGTGGGATGCTGAGTATTGGCTGCCACGTGGCGTCTCTTGGGCAGATATGTACAACAAAACGACGGAACCGGGTTTTATGTATCCACACTACTCACACTTATGGATGACAGTTCTTACCGGTATTTCACTTATTGTAAGTTTTTTTTCTATTTTTTTTCTAAAAACTTGCCGCTGAGTTCTAAACTATTCAAAACCTTGGAAAGTAAAAAATTATGAATTTCAGATCTATCGCCTCGTCTTTGAAAACTACGTCTTCGTTCCACTTGCCTATTTTCTCAGCAGAAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 201 150 149</canonical_bands>
                <polymorphic_bands>701 150 149</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>501 276 223</canonical_bands>
                <polymorphic_bands>777 223</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGGWCCC</site>
                <isoschizomers>
                    <enzyme>SanDI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACACTGCTCTACTGATAACCT</pcr_primer_p1>
		<pcr_primer_p2>AAGGAGAAAAGGGACATAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAACACTGCTCTACTGATAACCTAGCCACGAAACATCTTCAGTTATCCCAACGCAATTTCTCACTTTTTCCCGCCAAAATTTTCTCGCTTGCAGTTTAGGACAGTCTGTCTGGGCAAACACGCGGCGGGCGGGAGGGGACCCCGTCGTTTGTTTTGCGTTTATTTTTTTGCCATTTTCCGTCACCAATTGTGTTCCTTTTAAATAAAAAATGAATCACCTTTTGGGCGGTTCTATGTCCCTTTTCTCCTT</canonical_amplicon>
		<polymorphic_amplicon>CAACACTGCTCTACTGATAACCTAGCCACGAAACATCTTCAGTTATCCCAACGCAATTTCTCACTTTTTCCCGCCAAAATTTTCTCGCTTGCAGTTTAGGACAGTCTGTCTGGGCAAACACGCGGCGGGCGGGAGGKGACCCCGTCGTTTGTTTTGCGTTTATTTTTTTGCCATTTTCCGTCACCAATTGTGTTCCTTTTAAATAAAAAATGAATCACCTTTTGGGCGGTTCTATGTCCCTTTTCTCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1867</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>545933</contig_pos>
        <strand>+</strand>
        <context>CGGGCGGGAG[A/G]KGACCCCGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCTTGCAGTTTAGGACAGTCTGTCTGGGCAAACACGCGGCGGGCGGGAG</left_flank>
        <right_flank>GGACCCCGTCGTTTGTTTTGCGTTTATTTTTTTGCCATTTTCCGTCACCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAATATATTAACGAATCGCCACCGCCAAACACTTACTGGTAATCTCCTCCTATTTCTCTCTCTCTTTTTTCATTTCCATTTTCTCCATTTAATTCTATTCCTACTCATTTGCAACCAACGGGACTATGAGATACGGTCTTCTTGCATTTGGCCCTCTCATATCTTTGAAGATCTTTTCTTCATTGTCATTTCTAACCAGACATGTTCGTCATCCCAGCGGTCACGAGAGACAATGTGGAGAAGAACAACGGGGGGCGAGTAAAAAGAAGAATTGGGAGGCGAGGAGGAAAGGCGGGTCGGGCCGGGACACATTGAGTGTGTCTGTCGGGTTGACCCTTGCGATGCCGTTGCAACCGCTCAATGCAACACTGCTCTACTGATAACCTAGCCACGAAACATCTTCAGTTATCCCAACGCAATTTCTCACTTTTTCCCGCCAAAATTTTCTCGCTTGCAGTTTAGGACAGTCTGTCTGGGCAAACACGCGGCGGGCGGGAGGGGACCCCGTCGTTTGTTTTGCGTTTATTTTTTTGCCATTTTCCGTCACCAATTGTGTTCCTTTTAAATAAAAAATGAATCACCTTTTGGGCGGTTCTATGTCCCTTTTCTCCTTTTTTTGCAAACTGCCAACACAACTTTTATTATTCCACCTCGTCGTTTTTACTATCCTCTTGTTTTTCTGAACTATCATTTTTCAGCCATGTTCTGGTGGTGGGATGCTGAGTATTGGCTGCCACGTGGCGTCTCTTGGGCAGATATGTACAACAAAACGACGGAACCGGGTTTTATGTATCCACACTACTCACACTTATGGATGACAGTTCTTACCGGTATTTCACTTATTGTAAGTTTTTTTTCTATTTTTTTTCTAAAAACTTGCCGCTGAGTTCTAAACTATTCAAAACCTTGGAAAGTAAAAAATTATGAATTTCAGATCTATCGCCTCGTCTTTGAAAACTACGTCTTCGTTCCACTTGCCTATTTTCTCAGCAGAAAAAA</canonical>
            <polymorphic>GAAATATATTAACGAATCGCCACCGCCAAACACTTACTGGTAATCTCCTCCTATTTCTCTCTCTCTTTTTTCATTTCCATTTTCTCCATTTAATTCTATTCCTACTCATTTGCAACCAACGGGACTATGAGATACGGTCTTCTTGCATTTGGCCCTCTCATATCTTTGAAGATCTTTTCTTCATTGTCATTTCTAACCAGACATGTTCGTCATCCCAGCGGTCACGAGAGACAATGTGGAGAAGAACAACGGGGGGCGAGTAAAAAGAAGAATTGGGAGGCGAGGAGGAAAGGCGGGTCGGGCCGGGACACATTGAGTGTGTCTGTCGGGTTGACCCTTGCGATGCCGTTGCAACCGCTCAATGCAACACTGCTCTACTGATAACCTAGCCACGAAACATCTTCAGTTATCCCAACGCAATTTCTCACTTTTTCCCGCCAAAATTTTCTCGCTTGCAGTTTAGGACAGTCTGTCTGGGCAAACACGCGGCGGGCGGGAGRGGACCCCGTCGTTTGTTTTGCGTTTATTTTTTTGCCATTTTCCGTCACCAATTGTGTTCCTTTTAAATAAAAAATGAATCACCTTTTGGGCGGTTCTATGTCCCTTTTCTCCTTTTTTTGCAAACTGCCAACACAACTTTTATTATTCCACCTCGTCGTTTTTACTATCCTCTTGTTTTTCTGAACTATCATTTTTCAGCCATGTTCTGGTGGTGGGATGCTGAGTATTGGCTGCCACGTGGCGTCTCTTGGGCAGATATGTACAACAAAACGACGGAACCGGGTTTTATGTATCCACACTACTCACACTTATGGATGACAGTTCTTACCGGTATTTCACTTATTGTAAGTTTTTTTTCTATTTTTTTTCTAAAAACTTGCCGCTGAGTTCTAAACTATTCAAAACCTTGGAAAGTAAAAAATTATGAATTTCAGATCTATCGCCTCGTCTTTGAAAACTACGTCTTCGTTCCACTTGCCTATTTTCTCAGCAGAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 276 222</canonical_bands>
                <polymorphic_bands>503 275 222</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGGWCCC</site>
                <isoschizomers>
                    <enzyme>SanDI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACACTGCTCTACTGATAACCT</pcr_primer_p1>
		<pcr_primer_p2>AAGGAGAAAAGGGACATAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAACACTGCTCTACTGATAACCTAGCCACGAAACATCTTCAGTTATCCCAACGCAATTTCTCACTTTTTCCCGCCAAAATTTTCTCGCTTGCAGTTTAGGACAGTCTGTCTGGGCAAACACGCGGCGGGCGGGAGGGGACCCCGTCGTTTGTTTTGCGTTTATTTTTTTGCCATTTTCCGTCACCAATTGTGTTCCTTTTAAATAAAAAATGAATCACCTTTTGGGCGGTTCTATGTCCCTTTTCTCCTT</canonical_amplicon>
		<polymorphic_amplicon>CAACACTGCTCTACTGATAACCTAGCCACGAAACATCTTCAGTTATCCCAACGCAATTTCTCACTTTTTCCCGCCAAAATTTTCTCGCTTGCAGTTTAGGACAGTCTGTCTGGGCAAACACGCGGCGGGCGGGAGRGGACCCCGTCGTTTGTTTTGCGTTTATTTTTTTGCCATTTTCCGTCACCAATTGTGTTCCTTTTAAATAAAAAATGAATCACCTTTTGGGCGGTTCTATGTCCCTTTTCTCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1868</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>545821</contig_pos>
        <strand>+</strand>
        <context>CTGATAACCT[A/G]GCCACGAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGCGATGCCGTTGCAACCGCTCAATGCAACACTGCTCTACTGATAACCT</left_flank>
        <right_flank>GCCACGAAACATCTTCAGTTATCCCAACGCAATTTCTCACTTTTTCCCGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACTATCGTTTCCGTCTGTTCTGCCACACATTCGACTTTCACCCCATTTAGTATTGAAAAAATGGGAGCGAAAAACGGAAAACCAACGGAAATGAAAGAAATGAGTGGTGTAGAAATATATTAACGAATCGCCACCGCCAAACACTTACTGGTAATCTCCTCCTATTTCTCTCTCTCTTTTTTCATTTCCATTTTCTCCATTTAATTCTATTCCTACTCATTTGCAACCAACGGGACTATGAGATACGGTCTTCTTGCATTTGGCCCTCTCATATCTTTGAAGATCTTTTCTTCATTGTCATTTCTAACCAGACATGTTCGTCATCCCAGCGGTCACGAGAGACAATGTGGAGAAGAACAACGGGGGGCGAGTAAAAAGAAGAATTGGGAGGCGAGGAGGAAAGGCGGGTCGGGCCGGGACACATTGAGTGTGTCTGTCGGGTTGACCCTTGCGATGCCGTTGCAACCGCTCAATGCAACACTGCTCTACTGATAACCTAGCCACGAAACATCTTCAGTTATCCCAACGCAATTTCTCACTTTTTCCCGCCAAAATTTTCTCGCTTGCAGTTTAGGACAGTCTGTCTGGGCAAACACGCGGCGGGCGGGAGGGGACCCCGTCGTTTGTTTTGCGTTTATTTTTTTGCCATTTTCCGTCACCAATTGTGTTCCTTTTAAATAAAAAATGAATCACCTTTTGGGCGGTTCTATGTCCCTTTTCTCCTTTTTTTGCAAACTGCCAACACAACTTTTATTATTCCACCTCGTCGTTTTTACTATCCTCTTGTTTTTCTGAACTATCATTTTTCAGCCATGTTCTGGTGGTGGGATGCTGAGTATTGGCTGCCACGTGGCGTCTCTTGGGCAGATATGTACAACAAAACGACGGAACCGGGTTTTATGTATCCACACTACTCACACTTATGGATGACAGTTCTTACCGGTATTTCACTTATTGTAAGTTTTTTTTCTATTTTTTTTCTAAAAACTTGCCGCTGAG</canonical>
            <polymorphic>CACTATCGTTTCCGTCTGTTCTGCCACACATTCGACTTTCACCCCATTTAGTATTGAAAAAATGGGAGCGAAAAACGGAAAACCAACGGAAATGAAAGAAATGAGTGGTGTAGAAATATATTAACGAATCGCCACCGCCAAACACTTACTGGTAATCTCCTCCTATTTCTCTCTCTCTTTTTTCATTTCCATTTTCTCCATTTAATTCTATTCCTACTCATTTGCAACCAACGGGACTATGAGATACGGTCTTCTTGCATTTGGCCCTCTCATATCTTTGAAGATCTTTTCTTCATTGTCATTTCTAACCAGACATGTTCGTCATCCCAGCGGTCACGAGAGACAATGTGGAGAAGAACAACGGGGGGCGAGTAAAAAGAAGAATTGGGAGGCGAGGAGGAAAGGCGGGTCGGGCCGGGACACATTGAGTGTGTCTGTCGGGTTGACCCTTGCGATGCCGTTGCAACCGCTCAATGCAACACTGCTCTACTGATAACCTRGCCACGAAACATCTTCAGTTATCCCAACGCAATTTCTCACTTTTTCCCGCCAAAATTTTCTCGCTTGCAGTTTAGGACAGTCTGTCTGGGCAAACACGCGGCGGGCGGGAGGGGACCCCGTCGTTTGTTTTGCGTTTATTTTTTTGCCATTTTCCGTCACCAATTGTGTTCCTTTTAAATAAAAAATGAATCACCTTTTGGGCGGTTCTATGTCCCTTTTCTCCTTTTTTTGCAAACTGCCAACACAACTTTTATTATTCCACCTCGTCGTTTTTACTATCCTCTTGTTTTTCTGAACTATCATTTTTCAGCCATGTTCTGGTGGTGGGATGCTGAGTATTGGCTGCCACGTGGCGTCTCTTGGGCAGATATGTACAACAAAACGACGGAACCGGGTTTTATGTATCCACACTACTCACACTTATGGATGACAGTTCTTACCGGTATTTCACTTATTGTAAGTTTTTTTTCTATTTTTTTTCTAAAAACTTGCCGCTGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>310 264 157 150 87 32</canonical_bands>
                <polymorphic_bands>397 264 157 150 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACAATGTGGAGAAGAACAAC</pcr_primer_p1>
		<pcr_primer_p2>TAAACTGCAAGCGAGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>GACAATGTGGAGAAGAACAACGGGGGGCGAGTAAAAAGAAGAATTGGGAGGCGAGGAGGAAAGGCGGGTCGGGCCGGGACACATTGAGTGTGTCTGTCGGGTTGACCCTTGCGATGCCGTTGCAACCGCTCAATGCAACACTGCTCTACTGATAACCTAGCCACGAAACATCTTCAGTTATCCCAACGCAATTTCTCACTTTTTCCCGCCAAAATTTTCTCGCTTGCAGTTTA</canonical_amplicon>
		<polymorphic_amplicon>GACAATGTGGAGAAGAACAACGGGGGGCGAGTAAAAAGAAGAATTGGGAGGCGAGGAGGAAAGGCGGGTCGGGCCGGGACACATTGAGTGTGTCTGTCGGGTTGACCCTTGCGATGCCGTTGCAACCGCTCAATGCAACACTGCTCTACTGATAACCTRGCCACGAAACATCTTCAGTTATCCCAACGCAATTTCTCACTTTTTCCCGCCAAAATTTTCTCGCTTGCAGTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1869</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>545662</contig_pos>
        <strand>+</strand>
        <context>CGGTCACGAG[A/C]GACAATGTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTCATTGTCATTTCTAACCAGACATGTTCGTCATCCCAGCGGTCACGAG</left_flank>
        <right_flank>GACAATGTGGAGAAGAACAACGGGGGGCGAGTAAAAAGAAGAATTGGGAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAGAACACATGATTCCGATTGTAATTTTAGAAATTGTGCACGTCTAGGTATCCCCATTATCAGCATGTGTTGGGTTGATAAGAACTCTAGGAAATTGTCTTCTTGCCAACAGTTGGTTTTTTTTCCTCTCTCCCTCTTTTTCACTTTTTATCATTTACACTATCGTTTCCGTCTGTTCTGCCACACATTCGACTTTCACCCCATTTAGTATTGAAAAAATGGGAGCGAAAAACGGAAAACCAACGGAAATGAAAGAAATGAGTGGTGTAGAAATATATTAACGAATCGCCACCGCCAAACACTTACTGGTAATCTCCTCCTATTTCTCTCTCTCTTTTTTCATTTCCATTTTCTCCATTTAATTCTATTCCTACTCATTTGCAACCAACGGGACTATGAGATACGGTCTTCTTGCATTTGGCCCTCTCATATCTTTGAAGATCTTTTCTTCATTGTCATTTCTAACCAGACATGTTCGTCATCCCAGCGGTCACGAGAGACAATGTGGAGAAGAACAACGGGGGGCGAGTAAAAAGAAGAATTGGGAGGCGAGGAGGAAAGGCGGGTCGGGCCGGGACACATTGAGTGTGTCTGTCGGGTTGACCCTTGCGATGCCGTTGCAACCGCTCAATGCAACACTGCTCTACTGATAACCTAGCCACGAAACATCTTCAGTTATCCCAACGCAATTTCTCACTTTTTCCCGCCAAAATTTTCTCGCTTGCAGTTTAGGACAGTCTGTCTGGGCAAACACGCGGCGGGCGGGAGGGGACCCCGTCGTTTGTTTTGCGTTTATTTTTTTGCCATTTTCCGTCACCAATTGTGTTCCTTTTAAATAAAAAATGAATCACCTTTTGGGCGGTTCTATGTCCCTTTTCTCCTTTTTTTGCAAACTGCCAACACAACTTTTATTATTCCACCTCGTCGTTTTTACTATCCTCTTGTTTTTCTGAACTATCATTTTTCAGCCATGTTCTGGTGGTGGGATGCTGAGTATT</canonical>
            <polymorphic>GAAAGAACACATGATTCCGATTGTAATTTTAGAAATTGTGCACGTCTAGGTATCCCCATTATCAGCATGTGTTGGGTTGATAAGAACTCTAGGAAATTGTCTTCTTGCCAACAGTTGGTTTTTTTTCCTCTCTCCCTCTTTTTCACTTTTTATCATTTACACTATCGTTTCCGTCTGTTCTGCCACACATTCGACTTTCACCCCATTTAGTATTGAAAAAATGGGAGCGAAAAACGGAAAACCAACGGAAATGAAAGAAATGAGTGGTGTAGAAATATATTAACGAATCGCCACCGCCAAACACTTACTGGTAATCTCCTCCTATTTCTCTCTCTCTTTTTTCATTTCCATTTTCTCCATTTAATTCTATTCCTACTCATTTGCAACCAACGGGACTATGAGATACGGTCTTCTTGCATTTGGCCCTCTCATATCTTTGAAGATCTTTTCTTCATTGTCATTTCTAACCAGACATGTTCGTCATCCCAGCGGTCACGAGMGACAATGTGGAGAAGAACAACGGGGGGCGAGTAAAAAGAAGAATTGGGAGGCGAGGAGGAAAGGCGGGTCGGGCCGGGACACATTGAGTGTGTCTGTCGGGTTGACCCTTGCGATGCCGTTGCAACCGCTCAATGCAACACTGCTCTACTGATAACCTAGCCACGAAACATCTTCAGTTATCCCAACGCAATTTCTCACTTTTTCCCGCCAAAATTTTCTCGCTTGCAGTTTAGGACAGTCTGTCTGGGCAAACACGCGGCGGGCGGGAGGGGACCCCGTCGTTTGTTTTGCGTTTATTTTTTTGCCATTTTCCGTCACCAATTGTGTTCCTTTTAAATAAAAAATGAATCACCTTTTGGGCGGTTCTATGTCCCTTTTCTCCTTTTTTTGCAAACTGCCAACACAACTTTTATTATTCCACCTCGTCGTTTTTACTATCCTCTTGTTTTTCTGAACTATCATTTTTCAGCCATGTTCTGGTGGTGGGATGCTGAGTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAAGATCTTTTCTTCATTGTC</pcr_primer_p1>
		<pcr_primer_p2>TTGGGATAACTGAAGATGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGAAGATCTTTTCTTCATTGTCATTTCTAACCAGACATGTTCGTCATCCCAGCGGTCACGAGAGACAATGTGGAGAAGAACAACGGGGGGCGAGTAAAAAGAAGAATTGGGAGGCGAGGAGGAAAGGCGGGTCGGGCCGGGACACATTGAGTGTGTCTGTCGGGTTGACCCTTGCGATGCCGTTGCAACCGCTCAATGCAACACTGCTCTACTGATAACCTAGCCACGAAACATCTTCAGTTATCCCAA</canonical_amplicon>
		<polymorphic_amplicon>TTGAAGATCTTTTCTTCATTGTCATTTCTAACCAGACATGTTCGTCATCCCAGCGGTCACGAGMGACAATGTGGAGAAGAACAACGGGGGGCGAGTAAAAAGAAGAATTGGGAGGCGAGGAGGAAAGGCGGGTCGGGCCGGGACACATTGAGTGTGTCTGTCGGGTTGACCCTTGCGATGCCGTTGCAACCGCTCAATGCAACACTGCTCTACTGATAACCTAGCCACGAAACATCTTCAGTTATCCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1870</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>545482</contig_pos>
        <strand>+</strand>
        <context>GGTAATCTCC[C/T]CCTATTTCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGAAATATATTAACGAATCGCCACCGCCAAACACTTACTGGTAATCTCC</left_flank>
        <right_flank>CCTATTTCTCTCTCTCTTTTTTCATTTCCATTTTCTCCATTTAATTCTAT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTCATCGTCTTCTCTTCGTCTTTCTCTTCACTGCGCTCGCCCCGTTTCCCAACACTCTACAATACTCGTTTACGCTCTCCACGACAATTATCGTTCGATTCTTTTTGCGCTCCTTCGATTTTTAAGTTTTTTTCTTGGAAATTATTTCCTAGGTTAGTGAGAAGAAAGGAAACAAATCGAAAGAACACATGATTCCGATTGTAATTTTAGAAATTGTGCACGTCTAGGTATCCCCATTATCAGCATGTGTTGGGTTGATAAGAACTCTAGGAAATTGTCTTCTTGCCAACAGTTGGTTTTTTTTCCTCTCTCCCTCTTTTTCACTTTTTATCATTTACACTATCGTTTCCGTCTGTTCTGCCACACATTCGACTTTCACCCCATTTAGTATTGAAAAAATGGGAGCGAAAAACGGAAAACCAACGGAAATGAAAGAAATGAGTGGTGTAGAAATATATTAACGAATCGCCACCGCCAAACACTTACTGGTAATCTCCTCCTATTTCTCTCTCTCTTTTTTCATTTCCATTTTCTCCATTTAATTCTATTCCTACTCATTTGCAACCAACGGGACTATGAGATACGGTCTTCTTGCATTTGGCCCTCTCATATCTTTGAAGATCTTTTCTTCATTGTCATTTCTAACCAGACATGTTCGTCATCCCAGCGGTCACGAGAGACAATGTGGAGAAGAACAACGGGGGGCGAGTAAAAAGAAGAATTGGGAGGCGAGGAGGAAAGGCGGGTCGGGCCGGGACACATTGAGTGTGTCTGTCGGGTTGACCCTTGCGATGCCGTTGCAACCGCTCAATGCAACACTGCTCTACTGATAACCTAGCCACGAAACATCTTCAGTTATCCCAACGCAATTTCTCACTTTTTCCCGCCAAAATTTTCTCGCTTGCAGTTTAGGACAGTCTGTCTGGGCAAACACGCGGCGGGCGGGAGGGGACCCCGTCGTTTGTTTTGCGTTTATTTTTTTGCCATTTTCCGTCACC</canonical>
            <polymorphic>TGTTCATCGTCTTCTCTTCGTCTTTCTCTTCACTGCGCTCGCCCCGTTTCCCAACACTCTACAATACTCGTTTACGCTCTCCACGACAATTATCGTTCGATTCTTTTTGCGCTCCTTCGATTTTTAAGTTTTTTTCTTGGAAATTATTTCCTAGGTTAGTGAGAAGAAAGGAAACAAATCGAAAGAACACATGATTCCGATTGTAATTTTAGAAATTGTGCACGTCTAGGTATCCCCATTATCAGCATGTGTTGGGTTGATAAGAACTCTAGGAAATTGTCTTCTTGCCAACAGTTGGTTTTTTTTCCTCTCTCCCTCTTTTTCACTTTTTATCATTTACACTATCGTTTCCGTCTGTTCTGCCACACATTCGACTTTCACCCCATTTAGTATTGAAAAAATGGGAGCGAAAAACGGAAAACCAACGGAAATGAAAGAAATGAGTGGTGTAGAAATATATTAACGAATCGCCACCGCCAAACACTTACTGGTAATCTCCYCCTATTTCTCTCTCTCTTTTTTCATTTCCATTTTCTCCATTTAATTCTATTCCTACTCATTTGCAACCAACGGGACTATGAGATACGGTCTTCTTGCATTTGGCCCTCTCATATCTTTGAAGATCTTTTCTTCATTGTCATTTCTAACCAGACATGTTCGTCATCCCAGCGGTCACGAGAGACAATGTGGAGAAGAACAACGGGGGGCGAGTAAAAAGAAGAATTGGGAGGCGAGGAGGAAAGGCGGGTCGGGCCGGGACACATTGAGTGTGTCTGTCGGGTTGACCCTTGCGATGCCGTTGCAACCGCTCAATGCAACACTGCTCTACTGATAACCTAGCCACGAAACATCTTCAGTTATCCCAACGCAATTTCTCACTTTTTCCCGCCAAAATTTTCTCGCTTGCAGTTTAGGACAGTCTGTCTGGGCAAACACGCGGCGGGCGGGAGGGGACCCCGTCGTTTGTTTTGCGTTTATTTTTTTGCCATTTTCCGTCACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCCCATTTAGTATTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGATCTTCAAAGATATGAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACCCCATTTAGTATTGAAAAAATGGGAGCGAAAAACGGAAAACCAACGGAAATGAAAGAAATGAGTGGTGTAGAAATATATTAACGAATCGCCACCGCCAAACACTTACTGGTAATCTCCTCCTATTTCTCTCTCTCTTTTTTCATTTCCATTTTCTCCATTTAATTCTATTCCTACTCATTTGCAACCAACGGGACTATGAGATACGGTCTTCTTGCATTTGGCCCTCTCATATCTTTGAAGATCTTT</canonical_amplicon>
		<polymorphic_amplicon>CACCCCATTTAGTATTGAAAAAATGGGAGCGAAAAACGGAAAACCAACGGAAATGAAAGAAATGAGTGGTGTAGAAATATATTAACGAATCGCCACCGCCAAACACTTACTGGTAATCTCCYCCTATTTCTCTCTCTCTTTTTTCATTTCCATTTTCTCCATTTAATTCTATTCCTACTCATTTGCAACCAACGGGACTATGAGATACGGTCTTCTTGCATTTGGCCCTCTCATATCTTTGAAGATCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1871</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>589487</contig_pos>
        <strand>+</strand>
        <context>TATGCATACA[G/T]TTTTATGGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTATTACATTACAATTAGTAATTGTTTGATTTGTAACTTATATGCATACA</left_flank>
        <right_flank>TTTTATGGGTGTAGCATCATTTTGATCTAAATCAGAAACGGATTAAAAGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTCTACCTCTCCCGATCGACAGTGCCGATTCGCCCGGGGCAACAGGGGGAAATTTTGGAGGAAAAGACAAGGTACTAGAGAGATAGAAGAGGTATAGATTGGAAAATACACTGGACAGGCGGGGAGGTAAAAAGGTGGTCGGTCCGTCCGAAAAAAAACTTTTTTTATTTTCCTATCGTCACTCTCTTCTTCTATTATTTTTTGAAAAAACGAGAAGAGCGGGCCGAATTTCGCAATAGGTTTTCCCCCGATCTAAAATTTTTATCGTACTTTACCAACCTCTCCCCACGTCATGTTTGTCGTCGATTCTTATTGATTTTTGTTCCATTCATCATGAGTTTTACGATAAGGAAAACCCCAAACGGTACTGTGTGACTGTGTTTCTTGTCTTATCGATGTCCACATTCTATATGAAATTCTTCTATATATATTTTTGTTCTTTTTTTTCTATTACATTACAATTAGTAATTGTTTGATTTGTAACTTATATGCATACAGTTTTATGGGTGTAGCATCATTTTGATCTAAATCAGAAACGGATTAAAAGTGAAAAATTTGTCTATGATCATTTTCCAAAGTATGCAACTCTTTCAAAATTTTATTTTTTTATTTTTAAGCAAGCCTTTCCAAACCCATAATCAAGATGCTCATAATAACTAGGTAGTGTCGAACAAGAAAGAAAACCTATAATAATATAGAACACCATATTTCTCATTTCTCTCGCTTCTCTTTCTCTATTTGAGGGAAATCCCATTTGTGTTCGTCTCGCGTTTTTTTTCTGAAGACTCATATTACTCACAGGGTTTACATTTTTAGTTATATTTTTCATGGAAAAATAACTTTCATAGATTTCTCACACCAAAGTCCGATTTTTATGAGAACATTTGACTTTTTTTTCAATTTTTGAACCTACTTTTTGGCAAAAAAACTCAAATTTCCATTTTGAAACAATCTATTAAATTTTAAGTTTCCGTTCTTTAGAAGTTTTCACGTCCTTC</canonical>
            <polymorphic>CATTCTACCTCTCCCGATCGACAGTGCCGATTCGCCCGGGGCAACAGGGGGAAATTTTGGAGGAAAAGACAAGGTACTAGAGAGATAGAAGAGGTATAGATTGGAAAATACACTGGACAGGCGGGGAGGTAAAAAGGTGGTCGGTCCGTCCGAAAAAAAACTTTTTTTATTTTCCTATCGTCACTCTCTTCTTCTATTATTTTTTGAAAAAACGAGAAGAGCGGGCCGAATTTCGCAATAGGTTTTCCCCCGATCTAAAATTTTTATCGTACTTTACCAACCTCTCCCCACGTCATGTTTGTCGTCGATTCTTATTGATTTTTGTTCCATTCATCATGAGTTTTACGATAAGGAAAACCCCAAACGGTACTGTGTGACTGTGTTTCTTGTCTTATCGATGTCCACATTCTATATGAAATTCTTCTATATATATTTTTGTTCTTTTTTTTCTATTACATTACAATTAGTAATTGTTTGATTTGTAACTTATATGCATACAKTTTTATGGGTGTAGCATCATTTTGATCTAAATCAGAAACGGATTAAAAGTGAAAAATTTGTCTATGATCATTTTCCAAAGTATGCAACTCTTTCAAAATTTTATTTTTTTATTTTTAAGCAAGCCTTTCCAAACCCATAATCAAGATGCTCATAATAACTAGGTAGTGTCGAACAAGAAAGAAAACCTATAATAATATAGAACACCATATTTCTCATTTCTCTCGCTTCTCTTTCTCTATTTGAGGGAAATCCCATTTGTGTTCGTCTCGCGTTTTTTTTCTGAAGACTCATATTACTCACAGGGTTTACATTTTTAGTTATATTTTTCATGGAAAAATAACTTTCATAGATTTCTCACACCAAAGTCCGATTTTTATGAGAACATTTGACTTTTTTTTCAATTTTTGAACCTACTTTTTGGCAAAAAAACTCAAATTTCCATTTTGAAACAATCTATTAAATTTTAAGTTTCCGTTCTTTAGAAGTTTTCACGTCCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 343 120 23 8 5</canonical_bands>
                <polymorphic_bands>621 343 23 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTATTGATTTTTGTTCCATTC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCACTTTTAATCCGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTTATTGATTTTTGTTCCATTCATCATGAGTTTTACGATAAGGAAAACCCCAAACGGTACTGTGTGACTGTGTTTCTTGTCTTATCGATGTCCACATTCTATATGAAATTCTTCTATATATATTTTTGTTCTTTTTTTTCTATTACATTACAATTAGTAATTGTTTGATTTGTAACTTATATGCATACAGTTTTATGGGTGTAGCATCATTTTGATCTAAATCAGAAACGGATTAAAAGTGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TCTTATTGATTTTTGTTCCATTCATCATGAGTTTTACGATAAGGAAAACCCCAAACGGTACTGTGTGACTGTGTTTCTTGTCTTATCGATGTCCACATTCTATATGAAATTCTTCTATATATATTTTTGTTCTTTTTTTTCTATTACATTACAATTAGTAATTGTTTGATTTGTAACTTATATGCATACAKTTTTATGGGTGTAGCATCATTTTGATCTAAATCAGAAACGGATTAAAAGTGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1896</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>633229</contig_pos>
        <strand>+</strand>
        <context>AGAGGGAGCC[A/G]TACAACCGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTATGATAATCAGCAGTGGTAAAGGATCTCCAGCTGTTCCAGAGGGAGCC</left_flank>
        <right_flank>TACAACCGAATACACCAGTTGGCAAGTCTCCACTCGTTCAACGTCCGGGC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCTTCGTCGTCGGGATACGACACGTCGCCAAACAACCCATTCCCACCAACTGACTTCCCTCCACTCTCGGTCGAAAGTCATATTTCGTGTACATCTCGTGATTCTCACGCGCCAAACTCACAGTATTCTAGTATGCCACAAACTCCGATCTGTAAGTTTCAAGAATTATCGAAATCATGATTTGTTTGTCAATTCAGCTCAACACTCCAATGGATCACAGTATAATGCAATGTCGGTTTCAAATAATAGTAGCCAGTTCTCGCAAAGCAACGGTCATAGTCAACAGAATGCATTCCACGAGCATCCTCAGACGCCTCAATCGGTGCCGCAACAGGATCAGAATCAGTTCACTCCATTCGTCGCTCAAGGAATTAGAAATAGTGTATCAAATGAATCGGAACCTCGGTCCCAATCTCAGATATCAGCTGCCACTACTCCTAGTGATTGTATGATAATCAGCAGTGGTAAAGGATCTCCAGCTGTTCCAGAGGGAGCCATACAACCGAATACACCAGTTGGCAAGTCTCCACTCGTTCAACGTCCGGGCGAGACCGTCATCAAATCATATAGAGTTGTTCAAACTCCGTCCTCTGAAACTGCTCAATCTTATGCCAGTGTACAGTACATCCAAGCCGATGGGAATCAATCAGTTACCAACAAACGAATGATGTCAGAAGCTGCCAACCCTCAAATTGTTGGAGAAAACACGGCTAAAAGCATTTCTGTCAGAAATCGTTGGAATGGAAACAGAAGAATGACAGAGGAAACTGTTCCTGCCGCTGTGCCCGCACAAAACATCACTTCCGATCCGATGGTACCGGCAAACCAAAAATTTGGAGAGAGCCTGCAGAAATCCGACAATCAGTCACTTTATTCAGTGCATTATCTTCCTCATGAGACGTCGGAGAAATATAATTCTAGGAAATCCCAGTCCGATCTCAGTTTTCCTAATCTTCTTGCCATTCTTAGCAAAACTAATGAGGAAGGTTCAAGTCAA</canonical>
            <polymorphic>TCTTCTTCGTCGTCGGGATACGACACGTCGCCAAACAACCCATTCCCACCAACTGACTTCCCTCCACTCTCGGTCGAAAGTCATATTTCGTGTACATCTCGTGATTCTCACGCGCCAAACTCACAGTATTCTAGTATGCCACAAACTCCGATCTGTAAGTTTCAAGAATTATCGAAATCATGATTTGTTTGTCAATTCAGCTCAACACTCCAATGGATCACAGTATAATGCAATGTCGGTTTCAAATAATAGTAGCCAGTTCTCGCAAAGCAACGGTCATAGTCAACAGAATGCATTCCACGAGCATCCTCAGACGCCTCAATCGGTGCCGCAACAGGATCAGAATCAGTTCACTCCATTCGTCGCTCAAGGAATTAGAAATAGTGTATCAAATGAATCGGAACCTCGGTCCCAATCTCAGATATCAGCTGCCACTACTCCTAGTGATTGTATGATAATCAGCAGTGGTAAAGGATCTCCAGCTGTTCCAGAGGGAGCCRTACAACCGAATACACCAGTTGGCAAGTCTCCACTCGTTCAACGTCCGGGCGAGACCGTCATCAAATCATATAGAGTTGTTCAAACTCCGTCCTCTGAAACTGCTCAATCTTATGCCAGTGTACAGTACATCCAAGCCGATGGGAATCAATCAGTTACCAACAAACGAATGATGTCAGAAGCTGCCAACCCTCAAATTGTTGGAGAAAACACGGCTAAAAGCATTTCTGTCAGAAATCGTTGGAATGGAAACAGAAGAATGACAGAGGAAACTGTTCCTGCCGCTGTGCCCGCACAAAACATCACTTCCGATCCGATGGTACCGGCAAACCAAAAATTTGGAGAGAGCCTGCAGAAATCCGACAATCAGTCACTTTATTCAGTGCATTATCTTCCTCATGAGACGTCGGAGAAATATAATTCTAGGAAATCCCAGTCCGATCTCAGTTTTCCTAATCTTCTTGCCATTCTTAGCAAAACTAATGAGGAAGGTTCAAGTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTGTATCAAATGAATCGGAAC</pcr_primer_p1>
		<pcr_primer_p2>TACTGTACACTGGCATAAGATTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TAGTGTATCAAATGAATCGGAACCTCGGTCCCAATCTCAGATATCAGCTGCCACTACTCCTAGTGATTGTATGATAATCAGCAGTGGTAAAGGATCTCCAGCTGTTCCAGAGGGAGCCATACAACCGAATACACCAGTTGGCAAGTCTCCACTCGTTCAACGTCCGGGCGAGACCGTCATCAAATCATATAGAGTTGTTCAAACTCCGTCCTCTGAAACTGCTCAATCTTATGCCAGTGTACAGTA</canonical_amplicon>
		<polymorphic_amplicon>TAGTGTATCAAATGAATCGGAACCTCGGTCCCAATCTCAGATATCAGCTGCCACTACTCCTAGTGATTGTATGATAATCAGCAGTGGTAAAGGATCTCCAGCTGTTCCAGAGGGAGCCRTACAACCGAATACACCAGTTGGCAAGTCTCCACTCGTTCAACGTCCGGGCGAGACCGTCATCAAATCATATAGAGTTGTTCAAACTCCGTCCTCTGAAACTGCTCAATCTTATGCCAGTGTACAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1897</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>633272</contig_pos>
        <strand>+</strand>
        <context>CTCGTTCAAC[A/G]TCCGGGCGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGAGCCATACAACCGAATACACCAGTTGGCAAGTCTCCACTCGTTCAAC</left_flank>
        <right_flank>TCCGGGCGAGACCGTCATCAAATCATATAGAGTTGTTCAAACTCCGTCCT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCCACCAACTGACTTCCCTCCACTCTCGGTCGAAAGTCATATTTCGTGTACATCTCGTGATTCTCACGCGCCAAACTCACAGTATTCTAGTATGCCACAAACTCCGATCTGTAAGTTTCAAGAATTATCGAAATCATGATTTGTTTGTCAATTCAGCTCAACACTCCAATGGATCACAGTATAATGCAATGTCGGTTTCAAATAATAGTAGCCAGTTCTCGCAAAGCAACGGTCATAGTCAACAGAATGCATTCCACGAGCATCCTCAGACGCCTCAATCGGTGCCGCAACAGGATCAGAATCAGTTCACTCCATTCGTCGCTCAAGGAATTAGAAATAGTGTATCAAATGAATCGGAACCTCGGTCCCAATCTCAGATATCAGCTGCCACTACTCCTAGTGATTGTATGATAATCAGCAGTGGTAAAGGATCTCCAGCTGTTCCAGAGGGAGCCATACAACCGAATACACCAGTTGGCAAGTCTCCACTCGTTCAACGTCCGGGCGAGACCGTCATCAAATCATATAGAGTTGTTCAAACTCCGTCCTCTGAAACTGCTCAATCTTATGCCAGTGTACAGTACATCCAAGCCGATGGGAATCAATCAGTTACCAACAAACGAATGATGTCAGAAGCTGCCAACCCTCAAATTGTTGGAGAAAACACGGCTAAAAGCATTTCTGTCAGAAATCGTTGGAATGGAAACAGAAGAATGACAGAGGAAACTGTTCCTGCCGCTGTGCCCGCACAAAACATCACTTCCGATCCGATGGTACCGGCAAACCAAAAATTTGGAGAGAGCCTGCAGAAATCCGACAATCAGTCACTTTATTCAGTGCATTATCTTCCTCATGAGACGTCGGAGAAATATAATTCTAGGAAATCCCAGTCCGATCTCAGTTTTCCTAATCTTCTTGCCATTCTTAGCAAAACTAATGAGGAAGGTTCAAGTCAACAGTCGCCAGTGAAGATGCAGCCACCACCGCGTCCACCACCAC</canonical>
            <polymorphic>TCCCACCAACTGACTTCCCTCCACTCTCGGTCGAAAGTCATATTTCGTGTACATCTCGTGATTCTCACGCGCCAAACTCACAGTATTCTAGTATGCCACAAACTCCGATCTGTAAGTTTCAAGAATTATCGAAATCATGATTTGTTTGTCAATTCAGCTCAACACTCCAATGGATCACAGTATAATGCAATGTCGGTTTCAAATAATAGTAGCCAGTTCTCGCAAAGCAACGGTCATAGTCAACAGAATGCATTCCACGAGCATCCTCAGACGCCTCAATCGGTGCCGCAACAGGATCAGAATCAGTTCACTCCATTCGTCGCTCAAGGAATTAGAAATAGTGTATCAAATGAATCGGAACCTCGGTCCCAATCTCAGATATCAGCTGCCACTACTCCTAGTGATTGTATGATAATCAGCAGTGGTAAAGGATCTCCAGCTGTTCCAGAGGGAGCCATACAACCGAATACACCAGTTGGCAAGTCTCCACTCGTTCAACRTCCGGGCGAGACCGTCATCAAATCATATAGAGTTGTTCAAACTCCGTCCTCTGAAACTGCTCAATCTTATGCCAGTGTACAGTACATCCAAGCCGATGGGAATCAATCAGTTACCAACAAACGAATGATGTCAGAAGCTGCCAACCCTCAAATTGTTGGAGAAAACACGGCTAAAAGCATTTCTGTCAGAAATCGTTGGAATGGAAACAGAAGAATGACAGAGGAAACTGTTCCTGCCGCTGTGCCCGCACAAAACATCACTTCCGATCCGATGGTACCGGCAAACCAAAAATTTGGAGAGAGCCTGCAGAAATCCGACAATCAGTCACTTTATTCAGTGCATTATCTTCCTCATGAGACGTCGGAGAAATATAATTCTAGGAAATCCCAGTCCGATCTCAGTTTTCCTAATCTTCTTGCCATTCTTAGCAAAACTAATGAGGAAGGTTCAAGTCAACAGTCGCCAGTGAAGATGCAGCCACCACCGCGTCCACCACCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>498 361 141</canonical_bands>
                <polymorphic_bands>859 141</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGTGTATCAAATGAATCGGAAC</pcr_primer_p1>
		<pcr_primer_p2>TACTGTACACTGGCATAAGATTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TAGTGTATCAAATGAATCGGAACCTCGGTCCCAATCTCAGATATCAGCTGCCACTACTCCTAGTGATTGTATGATAATCAGCAGTGGTAAAGGATCTCCAGCTGTTCCAGAGGGAGCCATACAACCGAATACACCAGTTGGCAAGTCTCCACTCGTTCAACGTCCGGGCGAGACCGTCATCAAATCATATAGAGTTGTTCAAACTCCGTCCTCTGAAACTGCTCAATCTTATGCCAGTGTACAGTA</canonical_amplicon>
		<polymorphic_amplicon>TAGTGTATCAAATGAATCGGAACCTCGGTCCCAATCTCAGATATCAGCTGCCACTACTCCTAGTGATTGTATGATAATCAGCAGTGGTAAAGGATCTCCAGCTGTTCCAGAGGGAGCCATACAACCGAATACACCAGTTGGCAAGTCTCCACTCGTTCAACRTCCGGGCGAGACCGTCATCAAATCATATAGAGTTGTTCAAACTCCGTCCTCTGAAACTGCTCAATCTTATGCCAGTGTACAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1898</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>633519</contig_pos>
        <strand>+</strand>
        <context>CCGCTGTGCC[C/T]GCACAAAACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGAATGGAAACAGAAGAATGACAGAGGAAACTGTTCCTGCCGCTGTGCC</left_flank>
        <right_flank>GCACAAAACATCACTTCCGATCCGATGGTACCGGCAAACCAAAAATTTGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGCATTCCACGAGCATCCTCAGACGCCTCAATCGGTGCCGCAACAGGATCAGAATCAGTTCACTCCATTCGTCGCTCAAGGAATTAGAAATAGTGTATCAAATGAATCGGAACCTCGGTCCCAATCTCAGATATCAGCTGCCACTACTCCTAGTGATTGTATGATAATCAGCAGTGGTAAAGGATCTCCAGCTGTTCCAGAGGGAGCCATACAACCGAATACACCAGTTGGCAAGTCTCCACTCGTTCAACGTCCGGGCGAGACCGTCATCAAATCATATAGAGTTGTTCAAACTCCGTCCTCTGAAACTGCTCAATCTTATGCCAGTGTACAGTACATCCAAGCCGATGGGAATCAATCAGTTACCAACAAACGAATGATGTCAGAAGCTGCCAACCCTCAAATTGTTGGAGAAAACACGGCTAAAAGCATTTCTGTCAGAAATCGTTGGAATGGAAACAGAAGAATGACAGAGGAAACTGTTCCTGCCGCTGTGCCCGCACAAAACATCACTTCCGATCCGATGGTACCGGCAAACCAAAAATTTGGAGAGAGCCTGCAGAAATCCGACAATCAGTCACTTTATTCAGTGCATTATCTTCCTCATGAGACGTCGGAGAAATATAATTCTAGGAAATCCCAGTCCGATCTCAGTTTTCCTAATCTTCTTGCCATTCTTAGCAAAACTAATGAGGAAGGTTCAAGTCAACAGTCGCCAGTGAAGATGCAGCCACCACCGCGTCCACCACCACCAAAGAGAAGACGCATCACAACAAACGACATGAATCCACCAGTTCCACCAGGTTTGTTAATTAAAATTTCCTGAAGAAAATCGATCAATTAATTTTTTTCCATTTTCAGCAAAGCCAACACAAAGTCAAAGACAGCCGGAAACTGTTGGAGAATTGGTGCAGATGAAACTGGCGGAGGAAAGGGCGCGAAATGAAGATGGCGGTCAACTGTATCCACACAATAGTGACCAGGCTTTCCCGGTATCCA</canonical>
            <polymorphic>ATGCATTCCACGAGCATCCTCAGACGCCTCAATCGGTGCCGCAACAGGATCAGAATCAGTTCACTCCATTCGTCGCTCAAGGAATTAGAAATAGTGTATCAAATGAATCGGAACCTCGGTCCCAATCTCAGATATCAGCTGCCACTACTCCTAGTGATTGTATGATAATCAGCAGTGGTAAAGGATCTCCAGCTGTTCCAGAGGGAGCCATACAACCGAATACACCAGTTGGCAAGTCTCCACTCGTTCAACGTCCGGGCGAGACCGTCATCAAATCATATAGAGTTGTTCAAACTCCGTCCTCTGAAACTGCTCAATCTTATGCCAGTGTACAGTACATCCAAGCCGATGGGAATCAATCAGTTACCAACAAACGAATGATGTCAGAAGCTGCCAACCCTCAAATTGTTGGAGAAAACACGGCTAAAAGCATTTCTGTCAGAAATCGTTGGAATGGAAACAGAAGAATGACAGAGGAAACTGTTCCTGCCGCTGTGCCYGCACAAAACATCACTTCCGATCCGATGGTACCGGCAAACCAAAAATTTGGAGAGAGCCTGCAGAAATCCGACAATCAGTCACTTTATTCAGTGCATTATCTTCCTCATGAGACGTCGGAGAAATATAATTCTAGGAAATCCCAGTCCGATCTCAGTTTTCCTAATCTTCTTGCCATTCTTAGCAAAACTAATGAGGAAGGTTCAAGTCAACAGTCGCCAGTGAAGATGCAGCCACCACCGCGTCCACCACCACCAAAGAGAAGACGCATCACAACAAACGACATGAATCCACCAGTTCCACCAGGTTTGTTAATTAAAATTTCCTGAAGAAAATCGATCAATTAATTTTTTTCCATTTTCAGCAAAGCCAACACAAAGTCAAAGACAGCCGGAAACTGTTGGAGAATTGGTGCAGATGAAACTGGCGGAGGAAAGGGCGCGAAATGAAGATGGCGGTCAACTGTATCCACACAATAGTGACCAGGCTTTCCCGGTATCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>451 239 186 48 39 28 9</canonical_bands>
                <polymorphic_bands>451 248 186 48 39 28</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATCAATCAGTTACCAACAAAC</pcr_primer_p1>
		<pcr_primer_p2>TAATGCACTGAATAAAGTGACTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAATCAATCAGTTACCAACAAACGAATGATGTCAGAAGCTGCCAACCCTCAAATTGTTGGAGAAAACACGGCTAAAAGCATTTCTGTCAGAAATCGTTGGAATGGAAACAGAAGAATGACAGAGGAAACTGTTCCTGCCGCTGTGCCCGCACAAAACATCACTTCCGATCCGATGGTACCGGCAAACCAAAAATTTGGAGAGAGCCTGCAGAAATCCGACAATCAGTCACTTTATTCAGTGCATTA</canonical_amplicon>
		<polymorphic_amplicon>GAATCAATCAGTTACCAACAAACGAATGATGTCAGAAGCTGCCAACCCTCAAATTGTTGGAGAAAACACGGCTAAAAGCATTTCTGTCAGAAATCGTTGGAATGGAAACAGAAGAATGACAGAGGAAACTGTTCCTGCCGCTGTGCCYGCACAAAACATCACTTCCGATCCGATGGTACCGGCAAACCAAAAATTTGGAGAGAGCCTGCAGAAATCCGACAATCAGTCACTTTATTCAGTGCATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1899</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>633641</contig_pos>
        <strand>+</strand>
        <context>ACGTCGGAGA[A/G]ATATAATTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATCAGTCACTTTATTCAGTGCATTATCTTCCTCATGAGACGTCGGAGA</left_flank>
        <right_flank>ATATAATTCTAGGAAATCCCAGTCCGATCTCAGTTTTCCTAATCTTCTTG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATCTCAGATATCAGCTGCCACTACTCCTAGTGATTGTATGATAATCAGCAGTGGTAAAGGATCTCCAGCTGTTCCAGAGGGAGCCATACAACCGAATACACCAGTTGGCAAGTCTCCACTCGTTCAACGTCCGGGCGAGACCGTCATCAAATCATATAGAGTTGTTCAAACTCCGTCCTCTGAAACTGCTCAATCTTATGCCAGTGTACAGTACATCCAAGCCGATGGGAATCAATCAGTTACCAACAAACGAATGATGTCAGAAGCTGCCAACCCTCAAATTGTTGGAGAAAACACGGCTAAAAGCATTTCTGTCAGAAATCGTTGGAATGGAAACAGAAGAATGACAGAGGAAACTGTTCCTGCCGCTGTGCCCGCACAAAACATCACTTCCGATCCGATGGTACCGGCAAACCAAAAATTTGGAGAGAGCCTGCAGAAATCCGACAATCAGTCACTTTATTCAGTGCATTATCTTCCTCATGAGACGTCGGAGAAATATAATTCTAGGAAATCCCAGTCCGATCTCAGTTTTCCTAATCTTCTTGCCATTCTTAGCAAAACTAATGAGGAAGGTTCAAGTCAACAGTCGCCAGTGAAGATGCAGCCACCACCGCGTCCACCACCACCAAAGAGAAGACGCATCACAACAAACGACATGAATCCACCAGTTCCACCAGGTTTGTTAATTAAAATTTCCTGAAGAAAATCGATCAATTAATTTTTTTCCATTTTCAGCAAAGCCAACACAAAGTCAAAGACAGCCGGAAACTGTTGGAGAATTGGTGCAGATGAAACTGGCGGAGGAAAGGGCGCGAAATGAAGATGGCGGTCAACTGTATCCACACAATAGTGACCAGGCTTTCCCGGTATCCATTAATACTGTCGTAGCTGCCGGTAACGCTATTCCACTCAAAAACGATGGAAATATATCGCTCCAACAACAGCATGAGACAAGCAGTTGGCATATCGACAATGTTTCACATGTTAGAAACCAG</canonical>
            <polymorphic>CAATCTCAGATATCAGCTGCCACTACTCCTAGTGATTGTATGATAATCAGCAGTGGTAAAGGATCTCCAGCTGTTCCAGAGGGAGCCATACAACCGAATACACCAGTTGGCAAGTCTCCACTCGTTCAACGTCCGGGCGAGACCGTCATCAAATCATATAGAGTTGTTCAAACTCCGTCCTCTGAAACTGCTCAATCTTATGCCAGTGTACAGTACATCCAAGCCGATGGGAATCAATCAGTTACCAACAAACGAATGATGTCAGAAGCTGCCAACCCTCAAATTGTTGGAGAAAACACGGCTAAAAGCATTTCTGTCAGAAATCGTTGGAATGGAAACAGAAGAATGACAGAGGAAACTGTTCCTGCCGCTGTGCCCGCACAAAACATCACTTCCGATCCGATGGTACCGGCAAACCAAAAATTTGGAGAGAGCCTGCAGAAATCCGACAATCAGTCACTTTATTCAGTGCATTATCTTCCTCATGAGACGTCGGAGARATATAATTCTAGGAAATCCCAGTCCGATCTCAGTTTTCCTAATCTTCTTGCCATTCTTAGCAAAACTAATGAGGAAGGTTCAAGTCAACAGTCGCCAGTGAAGATGCAGCCACCACCGCGTCCACCACCACCAAAGAGAAGACGCATCACAACAAACGACATGAATCCACCAGTTCCACCAGGTTTGTTAATTAAAATTTCCTGAAGAAAATCGATCAATTAATTTTTTTCCATTTTCAGCAAAGCCAACACAAAGTCAAAGACAGCCGGAAACTGTTGGAGAATTGGTGCAGATGAAACTGGCGGAGGAAAGGGCGCGAAATGAAGATGGCGGTCAACTGTATCCACACAATAGTGACCAGGCTTTCCCGGTATCCATTAATACTGTCGTAGCTGCCGGTAACGCTATTCCACTCAAAAACGATGGAAATATATCGCTCCAACAACAGCATGAGACAAGCAGTTGGCATATCGACAATGTTTCACATGTTAGAAACCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGAATGACAGAGGAAACTGT</pcr_primer_p1>
		<pcr_primer_p2>ACTTGAACCTTCCTCATTAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAAGAATGACAGAGGAAACTGTTCCTGCCGCTGTGCCCGCACAAAACATCACTTCCGATCCGATGGTACCGGCAAACCAAAAATTTGGAGAGAGCCTGCAGAAATCCGACAATCAGTCACTTTATTCAGTGCATTATCTTCCTCATGAGACGTCGGAGAAATATAATTCTAGGAAATCCCAGTCCGATCTCAGTTTTCCTAATCTTCTTGCCATTCTTAGCAAAACTAATGAGGAAGGTTCAAGT</canonical_amplicon>
		<polymorphic_amplicon>AGAAGAATGACAGAGGAAACTGTTCCTGCCGCTGTGCCCGCACAAAACATCACTTCCGATCCGATGGTACCGGCAAACCAAAAATTTGGAGAGAGCCTGCAGAAATCCGACAATCAGTCACTTTATTCAGTGCATTATCTTCCTCATGAGACGTCGGAGARATATAATTCTAGGAAATCCCAGTCCGATCTCAGTTTTCCTAATCTTCTTGCCATTCTTAGCAAAACTAATGAGGAAGGTTCAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1900</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>633677</contig_pos>
        <strand>+</strand>
        <context>GATCTCAGTT[G/T]TCCTAATCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAGACGTCGGAGAAATATAATTCTAGGAAATCCCAGTCCGATCTCAGTT</left_flank>
        <right_flank>TCCTAATCTTCTTGCCATTCTTAGCAAAACTAATGAGGAAGGTTCAAGTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTATGATAATCAGCAGTGGTAAAGGATCTCCAGCTGTTCCAGAGGGAGCCATACAACCGAATACACCAGTTGGCAAGTCTCCACTCGTTCAACGTCCGGGCGAGACCGTCATCAAATCATATAGAGTTGTTCAAACTCCGTCCTCTGAAACTGCTCAATCTTATGCCAGTGTACAGTACATCCAAGCCGATGGGAATCAATCAGTTACCAACAAACGAATGATGTCAGAAGCTGCCAACCCTCAAATTGTTGGAGAAAACACGGCTAAAAGCATTTCTGTCAGAAATCGTTGGAATGGAAACAGAAGAATGACAGAGGAAACTGTTCCTGCCGCTGTGCCCGCACAAAACATCACTTCCGATCCGATGGTACCGGCAAACCAAAAATTTGGAGAGAGCCTGCAGAAATCCGACAATCAGTCACTTTATTCAGTGCATTATCTTCCTCATGAGACGTCGGAGAAATATAATTCTAGGAAATCCCAGTCCGATCTCAGTTTTCCTAATCTTCTTGCCATTCTTAGCAAAACTAATGAGGAAGGTTCAAGTCAACAGTCGCCAGTGAAGATGCAGCCACCACCGCGTCCACCACCACCAAAGAGAAGACGCATCACAACAAACGACATGAATCCACCAGTTCCACCAGGTTTGTTAATTAAAATTTCCTGAAGAAAATCGATCAATTAATTTTTTTCCATTTTCAGCAAAGCCAACACAAAGTCAAAGACAGCCGGAAACTGTTGGAGAATTGGTGCAGATGAAACTGGCGGAGGAAAGGGCGCGAAATGAAGATGGCGGTCAACTGTATCCACACAATAGTGACCAGGCTTTCCCGGTATCCATTAATACTGTCGTAGCTGCCGGTAACGCTATTCCACTCAAAAACGATGGAAATATATCGCTCCAACAACAGCATGAGACAAGCAGTTGGCATATCGACAATGTTTCACATGTTAGAAACCAGCTCAATATAGCAACACGCAAGCATGAGGAACACCTG</canonical>
            <polymorphic>TGTATGATAATCAGCAGTGGTAAAGGATCTCCAGCTGTTCCAGAGGGAGCCATACAACCGAATACACCAGTTGGCAAGTCTCCACTCGTTCAACGTCCGGGCGAGACCGTCATCAAATCATATAGAGTTGTTCAAACTCCGTCCTCTGAAACTGCTCAATCTTATGCCAGTGTACAGTACATCCAAGCCGATGGGAATCAATCAGTTACCAACAAACGAATGATGTCAGAAGCTGCCAACCCTCAAATTGTTGGAGAAAACACGGCTAAAAGCATTTCTGTCAGAAATCGTTGGAATGGAAACAGAAGAATGACAGAGGAAACTGTTCCTGCCGCTGTGCCCGCACAAAACATCACTTCCGATCCGATGGTACCGGCAAACCAAAAATTTGGAGAGAGCCTGCAGAAATCCGACAATCAGTCACTTTATTCAGTGCATTATCTTCCTCATGAGACGTCGGAGAAATATAATTCTAGGAAATCCCAGTCCGATCTCAGTTKTCCTAATCTTCTTGCCATTCTTAGCAAAACTAATGAGGAAGGTTCAAGTCAACAGTCGCCAGTGAAGATGCAGCCACCACCGCGTCCACCACCACCAAAGAGAAGACGCATCACAACAAACGACATGAATCCACCAGTTCCACCAGGTTTGTTAATTAAAATTTCCTGAAGAAAATCGATCAATTAATTTTTTTCCATTTTCAGCAAAGCCAACACAAAGTCAAAGACAGCCGGAAACTGTTGGAGAATTGGTGCAGATGAAACTGGCGGAGGAAAGGGCGCGAAATGAAGATGGCGGTCAACTGTATCCACACAATAGTGACCAGGCTTTCCCGGTATCCATTAATACTGTCGTAGCTGCCGGTAACGCTATTCCACTCAAAAACGATGGAAATATATCGCTCCAACAACAGCATGAGACAAGCAGTTGGCATATCGACAATGTTTCACATGTTAGAAACCAGCTCAATATAGCAACACGCAAGCATGAGGAACACCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTCACTTTATTCAGTGCATTAT</pcr_primer_p1>
		<pcr_primer_p2>AGGAAATTTTAATTAACAAACCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGTCACTTTATTCAGTGCATTATCTTCCTCATGAGACGTCGGAGAAATATAATTCTAGGAAATCCCAGTCCGATCTCAGTTTTCCTAATCTTCTTGCCATTCTTAGCAAAACTAATGAGGAAGGTTCAAGTCAACAGTCGCCAGTGAAGATGCAGCCACCACCGCGTCCACCACCACCAAAGAGAAGACGCATCACAACAAACGACATGAATCCACCAGTTCCACCAGGTTTGTTAATTAAAATTTCCT</canonical_amplicon>
		<polymorphic_amplicon>CAGTCACTTTATTCAGTGCATTATCTTCCTCATGAGACGTCGGAGAAATATAATTCTAGGAAATCCCAGTCCGATCTCAGTTKTCCTAATCTTCTTGCCATTCTTAGCAAAACTAATGAGGAAGGTTCAAGTCAACAGTCGCCAGTGAAGATGCAGCCACCACCGCGTCCACCACCACCAAAGAGAAGACGCATCACAACAAACGACATGAATCCACCAGTTCCACCAGGTTTGTTAATTAAAATTTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1901</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>637982</contig_pos>
        <strand>+</strand>
        <context>AGGAAATTGC[A/C]GAGGACCCGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAATCCAAACAATCATCATCAATTTCCCCACAGGACTTTGAGGAAATTGC</left_flank>
        <right_flank>GAGGACCCGTTCCAATATATGATGTCTGAGAACGATCCATACCTTCCAAT</right_flank>
        <qual_score>149</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAACGGATCAAACGAAACCAATCAAACGTGTAAAGAAAACTGATGAGCAGAAAAAAGCGAACGCTCTGAAGAAACAGGCAGCTGCCAAAAAGCCGGCAGCACCCAGGAAACCTGCTGCACCCAAGAAAACCGAACCGATCAATCAATCGGCAGCGACGAAAAGTTCGGAAGCAAAGGATAATGCAGATAAAGCCGCCGTATTGGTTCACACAATCATGACCGACTTTAAATCCAAAGAAAACGATCTCTTGATTAATCCAATCTCAATTACTACCGGAAATCTTTTGATGATCTCATCGACAACCAGTTCTTCTCAGTTGATGACACCTGCCACTCCCTCATCTCAGGAAAGCTTATTGGCTCAAACACCGGCAACCACTCCAATGAATTCCGAAAACCAGGAACCAGCCTTCCATTCACTTGCCTCCATTACTCATACAGTGTCAGAATCCAAACAATCATCATCAATTTCCCCACAGGACTTTGAGGAAATTGCAGAGGACCCGTTCCAATATATGATGTCTGAGAACGATCCATACCTTCCAATCGTTGAACGTCCAATGAAAGAAGAACCTATTTTGGGTTATTCAGACGAGCCTGATAATGGTAAACAATCATTTTCTTATAAAACAATTCCTAAAACTTTCAATTTTCAGAAACAGTCCAAGAACAACTTGTAATTTCTGTTGAAGGTGAAGCTCAATACGTCCCAGTGGTCACGATTCACGATGATGTGAATCCGAAACCATCGACGGATGTGTTAATTCAGCCCCCAAGTCACGGACTCATGGACATGGGATTCGAAAACAACTACTTGTTCAGCAGTCAGTACGGAATGATTGATTATGATAACATTCGATTCTAATTTTTTAATATATTTGTAGTTTGTAACCGTGATTGTGTTTTGTGTTGCTCACTAATTAGCTAAGTTTTATCAATAAATAGACATATAATCAAATTCCAGCGGTTCATTCGCCGTTCTCTCGTGATGATCCGT</canonical>
            <polymorphic>GAAAAACGGATCAAACGAAACCAATCAAACGTGTAAAGAAAACTGATGAGCAGAAAAAAGCGAACGCTCTGAAGAAACAGGCAGCTGCCAAAAAGCCGGCAGCACCCAGGAAACCTGCTGCACCCAAGAAAACCGAACCGATCAATCAATCGGCAGCGACGAAAAGTTCGGAAGCAAAGGATAATGCAGATAAAGCCGCCGTATTGGTTCACACAATCATGACCGACTTTAAATCCAAAGAAAACGATCTCTTGATTAATCCAATCTCAATTACTACCGGAAATCTTTTGATGATCTCATCGACAACCAGTTCTTCTCAGTTGATGACACCTGCCACTCCCTCATCTCAGGAAAGCTTATTGGCTCAAACACCGGCAACCACTCCAATGAATTCCGAAAACCAGGAACCAGCCTTCCATTCACTTGCCTCCATTACTCATACAGTGTCAGAATCCAAACAATCATCATCAATTTCCCCACAGGACTTTGAGGAAATTGCMGAGGACCCGTTCCAATATATGATGTCTGAGAACGATCCATACCTTCCAATCGTTGAACGTCCAATGAAAGAAGAACCTATTTTGGGTTATTCAGACGAGCCTGATAATGGTAAACAATCATTTTCTTATAAAACAATTCCTAAAACTTTCAATTTTCAGAAACAGTCCAAGAACAACTTGTAATTTCTGTTGAAGGTGAAGCTCAATACGTCCCAGTGGTCACGATTCACGATGATGTGAATCCGAAACCATCGACGGATGTGTTAATTCAGCCCCCAAGTCACGGACTCATGGACATGGGATTCGAAAACAACTACTTGTTCAGCAGTCAGTACGGAATGATTGATTATGATAACATTCGATTCTAATTTTTTAATATATTTGTAGTTTGTAACCGTGATTGTGTTTTGTGTTGCTCACTAATTAGCTAAGTTTTATCAATAAATAGACATATAATCAAATTCCAGCGGTTCATTCGCCGTTCTCTCGTGATGATCCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>502 312 120 66</canonical_bands>
                <polymorphic_bands>814 120 66</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATACAGTGTCAGAATCCAAAC</pcr_primer_p1>
		<pcr_primer_p2>AATTACAAGTTGTTCTTGGACTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CATACAGTGTCAGAATCCAAACAATCATCATCAATTTCCCCACAGGACTTTGAGGAAATTGCAGAGGACCCGTTCCAATATATGATGTCTGAGAACGATCCATACCTTCCAATCGTTGAACGTCCAATGAAAGAAGAACCTATTTTGGGTTATTCAGACGAGCCTGATAATGGTAAACAATCATTTTCTTATAAAACAATTCCTAAAACTTTCAATTTTCAGAAACAGTCCAAGAACAACTTGTAATT</canonical_amplicon>
		<polymorphic_amplicon>CATACAGTGTCAGAATCCAAACAATCATCATCAATTTCCCCACAGGACTTTGAGGAAATTGCMGAGGACCCGTTCCAATATATGATGTCTGAGAACGATCCATACCTTCCAATCGTTGAACGTCCAATGAAAGAAGAACCTATTTTGGGTTATTCAGACGAGCCTGATAATGGTAAACAATCATTTTCTTATAAAACAATTCCTAAAACTTTCAATTTTCAGAAACAGTCCAAGAACAACTTGTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1902</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>637868</contig_pos>
        <strand>+</strand>
        <context>CAACCACTCC[A/G]ATGAATTCCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTCCCTCATCTCAGGAAAGCTTATTGGCTCAAACACCGGCAACCACTCC</left_flank>
        <right_flank>ATGAATTCCGAAAACCAGGAACCAGCCTTCCATTCACTTGCCTCCATTAC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATCCATCGCGTAAGTCGTTACGAAACTATTAATTGAATGCAATCTTCATTATTTTCAGTGGAATCTGCACTTCATGGACGCCTTCGCAAACGTTTGCACTCCGTGAGAATCGGAAAAACGGATCAAACGAAACCAATCAAACGTGTAAAGAAAACTGATGAGCAGAAAAAAGCGAACGCTCTGAAGAAACAGGCAGCTGCCAAAAAGCCGGCAGCACCCAGGAAACCTGCTGCACCCAAGAAAACCGAACCGATCAATCAATCGGCAGCGACGAAAAGTTCGGAAGCAAAGGATAATGCAGATAAAGCCGCCGTATTGGTTCACACAATCATGACCGACTTTAAATCCAAAGAAAACGATCTCTTGATTAATCCAATCTCAATTACTACCGGAAATCTTTTGATGATCTCATCGACAACCAGTTCTTCTCAGTTGATGACACCTGCCACTCCCTCATCTCAGGAAAGCTTATTGGCTCAAACACCGGCAACCACTCCAATGAATTCCGAAAACCAGGAACCAGCCTTCCATTCACTTGCCTCCATTACTCATACAGTGTCAGAATCCAAACAATCATCATCAATTTCCCCACAGGACTTTGAGGAAATTGCAGAGGACCCGTTCCAATATATGATGTCTGAGAACGATCCATACCTTCCAATCGTTGAACGTCCAATGAAAGAAGAACCTATTTTGGGTTATTCAGACGAGCCTGATAATGGTAAACAATCATTTTCTTATAAAACAATTCCTAAAACTTTCAATTTTCAGAAACAGTCCAAGAACAACTTGTAATTTCTGTTGAAGGTGAAGCTCAATACGTCCCAGTGGTCACGATTCACGATGATGTGAATCCGAAACCATCGACGGATGTGTTAATTCAGCCCCCAAGTCACGGACTCATGGACATGGGATTCGAAAACAACTACTTGTTCAGCAGTCAGTACGGAATGATTGATTATGATAACATTCGATTCTAATTTTTTAATATATTTGTA</canonical>
            <polymorphic>GGATCCATCGCGTAAGTCGTTACGAAACTATTAATTGAATGCAATCTTCATTATTTTCAGTGGAATCTGCACTTCATGGACGCCTTCGCAAACGTTTGCACTCCGTGAGAATCGGAAAAACGGATCAAACGAAACCAATCAAACGTGTAAAGAAAACTGATGAGCAGAAAAAAGCGAACGCTCTGAAGAAACAGGCAGCTGCCAAAAAGCCGGCAGCACCCAGGAAACCTGCTGCACCCAAGAAAACCGAACCGATCAATCAATCGGCAGCGACGAAAAGTTCGGAAGCAAAGGATAATGCAGATAAAGCCGCCGTATTGGTTCACACAATCATGACCGACTTTAAATCCAAAGAAAACGATCTCTTGATTAATCCAATCTCAATTACTACCGGAAATCTTTTGATGATCTCATCGACAACCAGTTCTTCTCAGTTGATGACACCTGCCACTCCCTCATCTCAGGAAAGCTTATTGGCTCAAACACCGGCAACCACTCCRATGAATTCCGAAAACCAGGAACCAGCCTTCCATTCACTTGCCTCCATTACTCATACAGTGTCAGAATCCAAACAATCATCATCAATTTCCCCACAGGACTTTGAGGAAATTGCAGAGGACCCGTTCCAATATATGATGTCTGAGAACGATCCATACCTTCCAATCGTTGAACGTCCAATGAAAGAAGAACCTATTTTGGGTTATTCAGACGAGCCTGATAATGGTAAACAATCATTTTCTTATAAAACAATTCCTAAAACTTTCAATTTTCAGAAACAGTCCAAGAACAACTTGTAATTTCTGTTGAAGGTGAAGCTCAATACGTCCCAGTGGTCACGATTCACGATGATGTGAATCCGAAACCATCGACGGATGTGTTAATTCAGCCCCCAAGTCACGGACTCATGGACATGGGATTCGAAAACAACTACTTGTTCAGCAGTCAGTACGGAATGATTGATTATGATAACATTCGATTCTAATTTTTTAATATATTTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTACTACCGGAAATCTTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>ATATATTGGAACGGGTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTACTACCGGAAATCTTTTGATGATCTCATCGACAACCAGTTCTTCTCAGTTGATGACACCTGCCACTCCCTCATCTCAGGAAAGCTTATTGGCTCAAACACCGGCAACCACTCCAATGAATTCCGAAAACCAGGAACCAGCCTTCCATTCACTTGCCTCCATTACTCATACAGTGTCAGAATCCAAACAATCATCATCAATTTCCCCACAGGACTTTGAGGAAATTGCAGAGGACCCGTTCCAATATAT</canonical_amplicon>
		<polymorphic_amplicon>ATTACTACCGGAAATCTTTTGATGATCTCATCGACAACCAGTTCTTCTCAGTTGATGACACCTGCCACTCCCTCATCTCAGGAAAGCTTATTGGCTCAAACACCGGCAACCACTCCRATGAATTCCGAAAACCAGGAACCAGCCTTCCATTCACTTGCCTCCATTACTCATACAGTGTCAGAATCCAAACAATCATCATCAATTTCCCCACAGGACTTTGAGGAAATTGCAGAGGACCCGTTCCAATATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1903</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>637821</contig_pos>
        <strand>+</strand>
        <context>ACCTGCCACT[C/T]CCTCATCTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGATGATCTCATCGACAACCAGTTCTTCTCAGTTGATGACACCTGCCACT</left_flank>
        <right_flank>CCTCATCTCAGGAAAGCTTATTGGCTCAAACACCGGCAACCACTCCAATG</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACATGCATCCCTGCCCTGCCGAACTTAATGTGGATGATATAATTGCGGATCCATCGCGTAAGTCGTTACGAAACTATTAATTGAATGCAATCTTCATTATTTTCAGTGGAATCTGCACTTCATGGACGCCTTCGCAAACGTTTGCACTCCGTGAGAATCGGAAAAACGGATCAAACGAAACCAATCAAACGTGTAAAGAAAACTGATGAGCAGAAAAAAGCGAACGCTCTGAAGAAACAGGCAGCTGCCAAAAAGCCGGCAGCACCCAGGAAACCTGCTGCACCCAAGAAAACCGAACCGATCAATCAATCGGCAGCGACGAAAAGTTCGGAAGCAAAGGATAATGCAGATAAAGCCGCCGTATTGGTTCACACAATCATGACCGACTTTAAATCCAAAGAAAACGATCTCTTGATTAATCCAATCTCAATTACTACCGGAAATCTTTTGATGATCTCATCGACAACCAGTTCTTCTCAGTTGATGACACCTGCCACTCCCTCATCTCAGGAAAGCTTATTGGCTCAAACACCGGCAACCACTCCAATGAATTCCGAAAACCAGGAACCAGCCTTCCATTCACTTGCCTCCATTACTCATACAGTGTCAGAATCCAAACAATCATCATCAATTTCCCCACAGGACTTTGAGGAAATTGCAGAGGACCCGTTCCAATATATGATGTCTGAGAACGATCCATACCTTCCAATCGTTGAACGTCCAATGAAAGAAGAACCTATTTTGGGTTATTCAGACGAGCCTGATAATGGTAAACAATCATTTTCTTATAAAACAATTCCTAAAACTTTCAATTTTCAGAAACAGTCCAAGAACAACTTGTAATTTCTGTTGAAGGTGAAGCTCAATACGTCCCAGTGGTCACGATTCACGATGATGTGAATCCGAAACCATCGACGGATGTGTTAATTCAGCCCCCAAGTCACGGACTCATGGACATGGGATTCGAAAACAACTACTTGTTCAGCAGTCAGTACGGAA</canonical>
            <polymorphic>AACATGCATCCCTGCCCTGCCGAACTTAATGTGGATGATATAATTGCGGATCCATCGCGTAAGTCGTTACGAAACTATTAATTGAATGCAATCTTCATTATTTTCAGTGGAATCTGCACTTCATGGACGCCTTCGCAAACGTTTGCACTCCGTGAGAATCGGAAAAACGGATCAAACGAAACCAATCAAACGTGTAAAGAAAACTGATGAGCAGAAAAAAGCGAACGCTCTGAAGAAACAGGCAGCTGCCAAAAAGCCGGCAGCACCCAGGAAACCTGCTGCACCCAAGAAAACCGAACCGATCAATCAATCGGCAGCGACGAAAAGTTCGGAAGCAAAGGATAATGCAGATAAAGCCGCCGTATTGGTTCACACAATCATGACCGACTTTAAATCCAAAGAAAACGATCTCTTGATTAATCCAATCTCAATTACTACCGGAAATCTTTTGATGATCTCATCGACAACCAGTTCTTCTCAGTTGATGACACCTGCCACTYCCTCATCTCAGGAAAGCTTATTGGCTCAAACACCGGCAACCACTCCAATGAATTCCGAAAACCAGGAACCAGCCTTCCATTCACTTGCCTCCATTACTCATACAGTGTCAGAATCCAAACAATCATCATCAATTTCCCCACAGGACTTTGAGGAAATTGCAGAGGACCCGTTCCAATATATGATGTCTGAGAACGATCCATACCTTCCAATCGTTGAACGTCCAATGAAAGAAGAACCTATTTTGGGTTATTCAGACGAGCCTGATAATGGTAAACAATCATTTTCTTATAAAACAATTCCTAAAACTTTCAATTTTCAGAAACAGTCCAAGAACAACTTGTAATTTCTGTTGAAGGTGAAGCTCAATACGTCCCAGTGGTCACGATTCACGATGATGTGAATCCGAAACCATCGACGGATGTGTTAATTCAGCCCCCAAGTCACGGACTCATGGACATGGGATTCGAAAACAACTACTTGTTCAGCAGTCAGTACGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTACTACCGGAAATCTTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>ATATATTGGAACGGGTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTACTACCGGAAATCTTTTGATGATCTCATCGACAACCAGTTCTTCTCAGTTGATGACACCTGCCACTCCCTCATCTCAGGAAAGCTTATTGGCTCAAACACCGGCAACCACTCCAATGAATTCCGAAAACCAGGAACCAGCCTTCCATTCACTTGCCTCCATTACTCATACAGTGTCAGAATCCAAACAATCATCATCAATTTCCCCACAGGACTTTGAGGAAATTGCAGAGGACCCGTTCCAATATAT</canonical_amplicon>
		<polymorphic_amplicon>ATTACTACCGGAAATCTTTTGATGATCTCATCGACAACCAGTTCTTCTCAGTTGATGACACCTGCCACTYCCTCATCTCAGGAAAGCTTATTGGCTCAAACACCGGCAACCACTCCAATGAATTCCGAAAACCAGGAACCAGCCTTCCATTCACTTGCCTCCATTACTCATACAGTGTCAGAATCCAAACAATCATCATCAATTTCCCCACAGGACTTTGAGGAAATTGCAGAGGACCCGTTCCAATATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1904</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>637581</contig_pos>
        <strand>+</strand>
        <context>CAAAAAGCCG[C/G]CAGCACCCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGCAGAAAAAAGCGAACGCTCTGAAGAAACAGGCAGCTGCCAAAAAGCCG</left_flank>
        <right_flank>CAGCACCCAGGAAACCTGCTGCACCCAAGAAAACCGAACCGATCAATCAA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCAAATCATCAAAATCTGCCAAAAAGAAGAGTCATCGAGCAACGAAACCGCCACAATTGGACGAAAATGGTGAACCCGTTGTTTCTAATACGGTCCGTTGGAAGCACATTCGGGAGACTGTAGCTGAAGTCGCTGCATGGCCTCGGTTGACTGTAGAAGAGATTTTTGATGAAGAAGAAGATCAACCAGTCACCGAACAGGACTATTTTGAGTTTCTACTTGAAATGGAGCTCGAAATGAACATGCATCCCTGCCCTGCCGAACTTAATGTGGATGATATAATTGCGGATCCATCGCGTAAGTCGTTACGAAACTATTAATTGAATGCAATCTTCATTATTTTCAGTGGAATCTGCACTTCATGGACGCCTTCGCAAACGTTTGCACTCCGTGAGAATCGGAAAAACGGATCAAACGAAACCAATCAAACGTGTAAAGAAAACTGATGAGCAGAAAAAAGCGAACGCTCTGAAGAAACAGGCAGCTGCCAAAAAGCCGGCAGCACCCAGGAAACCTGCTGCACCCAAGAAAACCGAACCGATCAATCAATCGGCAGCGACGAAAAGTTCGGAAGCAAAGGATAATGCAGATAAAGCCGCCGTATTGGTTCACACAATCATGACCGACTTTAAATCCAAAGAAAACGATCTCTTGATTAATCCAATCTCAATTACTACCGGAAATCTTTTGATGATCTCATCGACAACCAGTTCTTCTCAGTTGATGACACCTGCCACTCCCTCATCTCAGGAAAGCTTATTGGCTCAAACACCGGCAACCACTCCAATGAATTCCGAAAACCAGGAACCAGCCTTCCATTCACTTGCCTCCATTACTCATACAGTGTCAGAATCCAAACAATCATCATCAATTTCCCCACAGGACTTTGAGGAAATTGCAGAGGACCCGTTCCAATATATGATGTCTGAGAACGATCCATACCTTCCAATCGTTGAACGTCCAATGAAAGAAGAACCTATTTTGGGTTATTCAGACGAG</canonical>
            <polymorphic>GCCAAATCATCAAAATCTGCCAAAAAGAAGAGTCATCGAGCAACGAAACCGCCACAATTGGACGAAAATGGTGAACCCGTTGTTTCTAATACGGTCCGTTGGAAGCACATTCGGGAGACTGTAGCTGAAGTCGCTGCATGGCCTCGGTTGACTGTAGAAGAGATTTTTGATGAAGAAGAAGATCAACCAGTCACCGAACAGGACTATTTTGAGTTTCTACTTGAAATGGAGCTCGAAATGAACATGCATCCCTGCCCTGCCGAACTTAATGTGGATGATATAATTGCGGATCCATCGCGTAAGTCGTTACGAAACTATTAATTGAATGCAATCTTCATTATTTTCAGTGGAATCTGCACTTCATGGACGCCTTCGCAAACGTTTGCACTCCGTGAGAATCGGAAAAACGGATCAAACGAAACCAATCAAACGTGTAAAGAAAACTGATGAGCAGAAAAAAGCGAACGCTCTGAAGAAACAGGCAGCTGCCAAAAAGCCGSCAGCACCCAGGAAACCTGCTGCACCCAAGAAAACCGAACCGATCAATCAATCGGCAGCGACGAAAAGTTCGGAAGCAAAGGATAATGCAGATAAAGCCGCCGTATTGGTTCACACAATCATGACCGACTTTAAATCCAAAGAAAACGATCTCTTGATTAATCCAATCTCAATTACTACCGGAAATCTTTTGATGATCTCATCGACAACCAGTTCTTCTCAGTTGATGACACCTGCCACTCCCTCATCTCAGGAAAGCTTATTGGCTCAAACACCGGCAACCACTCCAATGAATTCCGAAAACCAGGAACCAGCCTTCCATTCACTTGCCTCCATTACTCATACAGTGTCAGAATCCAAACAATCATCATCAATTTCCCCACAGGACTTTGAGGAAATTGCAGAGGACCCGTTCCAATATATGATGTCTGAGAACGATCCATACCTTCCAATCGTTGAACGTCCAATGAAAGAAGAACCTATTTTGGGTTATTCAGACGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>496 276 228</canonical_bands>
                <polymorphic_bands>772 228</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>497 227 181 95</canonical_bands>
                <polymorphic_bands>678 227 95</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>401 349 136 42 36 18 18</canonical_bands>
                <polymorphic_bands>401 349 136 42 36 36</polymorphic_bands>
            </assay>
            <assay>
                <site>GCCGGC</site>
                <isoschizomers>
                    <enzyme>MroNI</enzyme>
                    <enzyme>NaeI</enzyme>
                    <enzyme>NgoAIV</enzyme>
                    <enzyme>NgoMIV</enzyme>
                    <enzyme>PdiI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>446 349 133 36 18 15 3</canonical_bands>
                <polymorphic_bands>446 349 133 36 33 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATCAAACGTGTAAAGAAAACT</pcr_primer_p1>
		<pcr_primer_p2>TTGAGATTGGATTAATCAAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAATCAAACGTGTAAAGAAAACTGATGAGCAGAAAAAAGCGAACGCTCTGAAGAAACAGGCAGCTGCCAAAAAGCCGGCAGCACCCAGGAAACCTGCTGCACCCAAGAAAACCGAACCGATCAATCAATCGGCAGCGACGAAAAGTTCGGAAGCAAAGGATAATGCAGATAAAGCCGCCGTATTGGTTCACACAATCATGACCGACTTTAAATCCAAAGAAAACGATCTCTTGATTAATCCAATCTCAA</canonical_amplicon>
		<polymorphic_amplicon>CAATCAAACGTGTAAAGAAAACTGATGAGCAGAAAAAAGCGAACGCTCTGAAGAAACAGGCAGCTGCCAAAAAGCCGSCAGCACCCAGGAAACCTGCTGCACCCAAGAAAACCGAACCGATCAATCAATCGGCAGCGACGAAAAGTTCGGAAGCAAAGGATAATGCAGATAAAGCCGCCGTATTGGTTCACACAATCATGACCGACTTTAAATCCAAAGAAAACGATCTCTTGATTAATCCAATCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1909</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>640447</contig_pos>
        <strand>+</strand>
        <context>GACCTTTGAG[C/T]ATTGTGATTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCCATGAACACACAAGTAGTAATAACTGTCGCATTGCGGACCTTTGAG</left_flank>
        <right_flank>ATTGTGATTGACGAGAAGAAGACTGGGAGCGATGCGAGAGAGTAGGATTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTAGCATGGATTCTCTCAATCAGAGAAAGTATATCTTTCTGTGTCTAGACTTTCATTTTTCAGAACTTTAGACAAAAAATATATACGGTTTATTCACATCGACGCGATTCAAATAAAAATGGGGGTACGAAACATTTAATTATCTGAGGGAGAAAAAATTTATCGACAAAAATTCCAATTAGGCTTCGAAGACAATATCCGCTGTGTCCTTCTCGTTGCCCCACTTGACTGCTGGAATTGCGAGGATAACCTTAGCGCGGGAACTGTCAAGCTTTCTCGAGAGCTTAATGACCTTTTGTAGGGTGTAGTATCGCATTCCTTCCACTGAAATTCAAAAATATTCACACAATGTCAATGTATAGACGAACTAACCAACAATCAATCCGAATGTCATTATCACAATCAACAACCCGCTGATCAGCTTGGTCAAGAGAAGGTCGTCATAGATTCCATGAACACACAAGTAGTAATAACTGTCGCATTGCGGACCTTTGAGCATTGTGATTGACGAGAAGAAGACTGGGAGCGATGCGAGAGAGTAGGATTTGAGGAAGAGTTGGAAGATCTCAAATAAAGAAAGTTGTTATTGTTTTTGAAAACTAAATAGATACCGAAAAGCGACATTGATAAACTTGGTATTTCCCCTCCATTATCCATACGTTAGTTGCAAGACTTGCCAGTGACACAACTGTGGAGAATTTGATTTGGATCTCCATATTTGGATGGCTTTGCGGGACATGGTATGCAAGCATCACGAAGAAAACAAGCGCTGAAATCTCCCACATGTACAGTTGGCGCCAATTTGATTTCTCTTGTTCTAACACCTATAAATATAATTGATGGATCTATTCTGAATATGAGAAAACAGTACCAATTGAGTTCGCATCCTTGCCTTTGCTGTATTGACCGTTTTCGTTGGAGAGGGATCCTTCACCGGTGCATCCATCGCTGAAAACGGATAAGAAAAACTGCTTAATGAAAACGATATGAATGTGAG</canonical>
            <polymorphic>TTCTTAGCATGGATTCTCTCAATCAGAGAAAGTATATCTTTCTGTGTCTAGACTTTCATTTTTCAGAACTTTAGACAAAAAATATATACGGTTTATTCACATCGACGCGATTCAAATAAAAATGGGGGTACGAAACATTTAATTATCTGAGGGAGAAAAAATTTATCGACAAAAATTCCAATTAGGCTTCGAAGACAATATCCGCTGTGTCCTTCTCGTTGCCCCACTTGACTGCTGGAATTGCGAGGATAACCTTAGCGCGGGAACTGTCAAGCTTTCTCGAGAGCTTAATGACCTTTTGTAGGGTGTAGTATCGCATTCCTTCCACTGAAATTCAAAAATATTCACACAATGTCAATGTATAGACGAACTAACCAACAATCAATCCGAATGTCATTATCACAATCAACAACCCGCTGATCAGCTTGGTCAAGAGAAGGTCGTCATAGATTCCATGAACACACAAGTAGTAATAACTGTCGCATTGCGGACCTTTGAGYATTGTGATTGACGAGAAGAAGACTGGGAGCGATGCGAGAGAGTAGGATTTGAGGAAGAGTTGGAAGATCTCAAATAAAGAAAGTTGTTATTGTTTTTGAAAACTAAATAGATACCGAAAAGCGACATTGATAAACTTGGTATTTCCCCTCCATTATCCATACGTTAGTTGCAAGACTTGCCAGTGACACAACTGTGGAGAATTTGATTTGGATCTCCATATTTGGATGGCTTTGCGGGACATGGTATGCAAGCATCACGAAGAAAACAAGCGCTGAAATCTCCCACATGTACAGTTGGCGCCAATTTGATTTCTCTTGTTCTAACACCTATAAATATAATTGATGGATCTATTCTGAATATGAGAAAACAGTACCAATTGAGTTCGCATCCTTGCCTTTGCTGTATTGACCGTTTTCGTTGGAGAGGGATCCTTCACCGGTGCATCCATCGCTGAAAACGGATAAGAAAAACTGCTTAATGAAAACGATATGAATGTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTCATTATCACAATCAACAA</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTATCAATGTCGCTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATGTCATTATCACAATCAACAACCCGCTGATCAGCTTGGTCAAGAGAAGGTCGTCATAGATTCCATGAACACACAAGTAGTAATAACTGTCGCATTGCGGACCTTTGAGCATTGTGATTGACGAGAAGAAGACTGGGAGCGATGCGAGAGAGTAGGATTTGAGGAAGAGTTGGAAGATCTCAAATAAAGAAAGTTGTTATTGTTTTTGAAAACTAAATAGATACCGAAAAGCGACATTGATAAACTT</canonical_amplicon>
		<polymorphic_amplicon>AATGTCATTATCACAATCAACAACCCGCTGATCAGCTTGGTCAAGAGAAGGTCGTCATAGATTCCATGAACACACAAGTAGTAATAACTGTCGCATTGCGGACCTTTGAGYATTGTGATTGACGAGAAGAAGACTGGGAGCGATGCGAGAGAGTAGGATTTGAGGAAGAGTTGGAAGATCTCAAATAAAGAAAGTTGTTATTGTTTTTGAAAACTAAATAGATACCGAAAAGCGACATTGATAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1910</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>640294</contig_pos>
        <strand>+</strand>
        <context>AAAAATATTC[A/T]CACAATGTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTGTAGGGTGTAGTATCGCATTCCTTCCACTGAAATTCAAAAATATTC</left_flank>
        <right_flank>CACAATGTCAATGTATAGACGAACTAACCAACAATCAATCCGAATGTCAT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTTGAACGCCATTTCTCAATCTTGCTTCAAGTTTTAAAATCACCATCGCCTCGCAATTTTTTCTTATAACGCTGCCAAATTTTTTCATCTCCAACTGACAGTCAGCCTTTTCTGATCATGTGCTCTCTTTAATAAAATGTTGACTTTTTCTTCTTAGCATGGATTCTCTCAATCAGAGAAAGTATATCTTTCTGTGTCTAGACTTTCATTTTTCAGAACTTTAGACAAAAAATATATACGGTTTATTCACATCGACGCGATTCAAATAAAAATGGGGGTACGAAACATTTAATTATCTGAGGGAGAAAAAATTTATCGACAAAAATTCCAATTAGGCTTCGAAGACAATATCCGCTGTGTCCTTCTCGTTGCCCCACTTGACTGCTGGAATTGCGAGGATAACCTTAGCGCGGGAACTGTCAAGCTTTCTCGAGAGCTTAATGACCTTTTGTAGGGTGTAGTATCGCATTCCTTCCACTGAAATTCAAAAATATTCACACAATGTCAATGTATAGACGAACTAACCAACAATCAATCCGAATGTCATTATCACAATCAACAACCCGCTGATCAGCTTGGTCAAGAGAAGGTCGTCATAGATTCCATGAACACACAAGTAGTAATAACTGTCGCATTGCGGACCTTTGAGCATTGTGATTGACGAGAAGAAGACTGGGAGCGATGCGAGAGAGTAGGATTTGAGGAAGAGTTGGAAGATCTCAAATAAAGAAAGTTGTTATTGTTTTTGAAAACTAAATAGATACCGAAAAGCGACATTGATAAACTTGGTATTTCCCCTCCATTATCCATACGTTAGTTGCAAGACTTGCCAGTGACACAACTGTGGAGAATTTGATTTGGATCTCCATATTTGGATGGCTTTGCGGGACATGGTATGCAAGCATCACGAAGAAAACAAGCGCTGAAATCTCCCACATGTACAGTTGGCGCCAATTTGATTTCTCTTGTTCTAACACCTATAAATATAATTGATGGA</canonical>
            <polymorphic>TTCTTTGAACGCCATTTCTCAATCTTGCTTCAAGTTTTAAAATCACCATCGCCTCGCAATTTTTTCTTATAACGCTGCCAAATTTTTTCATCTCCAACTGACAGTCAGCCTTTTCTGATCATGTGCTCTCTTTAATAAAATGTTGACTTTTTCTTCTTAGCATGGATTCTCTCAATCAGAGAAAGTATATCTTTCTGTGTCTAGACTTTCATTTTTCAGAACTTTAGACAAAAAATATATACGGTTTATTCACATCGACGCGATTCAAATAAAAATGGGGGTACGAAACATTTAATTATCTGAGGGAGAAAAAATTTATCGACAAAAATTCCAATTAGGCTTCGAAGACAATATCCGCTGTGTCCTTCTCGTTGCCCCACTTGACTGCTGGAATTGCGAGGATAACCTTAGCGCGGGAACTGTCAAGCTTTCTCGAGAGCTTAATGACCTTTTGTAGGGTGTAGTATCGCATTCCTTCCACTGAAATTCAAAAATATTCWCACAATGTCAATGTATAGACGAACTAACCAACAATCAATCCGAATGTCATTATCACAATCAACAACCCGCTGATCAGCTTGGTCAAGAGAAGGTCGTCATAGATTCCATGAACACACAAGTAGTAATAACTGTCGCATTGCGGACCTTTGAGCATTGTGATTGACGAGAAGAAGACTGGGAGCGATGCGAGAGAGTAGGATTTGAGGAAGAGTTGGAAGATCTCAAATAAAGAAAGTTGTTATTGTTTTTGAAAACTAAATAGATACCGAAAAGCGACATTGATAAACTTGGTATTTCCCCTCCATTATCCATACGTTAGTTGCAAGACTTGCCAGTGACACAACTGTGGAGAATTTGATTTGGATCTCCATATTTGGATGGCTTTGCGGGACATGGTATGCAAGCATCACGAAGAAAACAAGCGCTGAAATCTCCCACATGTACAGTTGGCGCCAATTTGATTTCTCTTGTTCTAACACCTATAAATATAATTGATGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>179 110 82 80 74 61 59 53 53 45 43 41 28 21 20 19 17 8 3 2 2</canonical_bands>
                <polymorphic_bands>179 110 82 80 74 61 59 53 53 45 43 41 28 22 21 19 17 8 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAGCTTAATGACCTTTTGTAG</pcr_primer_p1>
		<pcr_primer_p2>CAGTCTTCTTCTCGTCAATCA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GAGAGCTTAATGACCTTTTGTAGGGTGTAGTATCGCATTCCTTCCACTGAAATTCAAAAATATTCACACAATGTCAATGTATAGACGAACTAACCAACAATCAATCCGAATGTCATTATCACAATCAACAACCCGCTGATCAGCTTGGTCAAGAGAAGGTCGTCATAGATTCCATGAACACACAAGTAGTAATAACTGTCGCATTGCGGACCTTTGAGCATTGTGATTGACGAGAAGAAGACTG</canonical_amplicon>
		<polymorphic_amplicon>GAGAGCTTAATGACCTTTTGTAGGGTGTAGTATCGCATTCCTTCCACTGAAATTCAAAAATATTCWCACAATGTCAATGTATAGACGAACTAACCAACAATCAATCCGAATGTCATTATCACAATCAACAACCCGCTGATCAGCTTGGTCAAGAGAAGGTCGTCATAGATTCCATGAACACACAAGTAGTAATAACTGTCGCATTGCGGACCTTTGAGCATTGTGATTGACGAGAAGAAGACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1911</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>642984</contig_pos>
        <strand>+</strand>
        <context>TAGTGCGGAG[A/C]CTGGCGCGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTCCAGTAAAGCTAGTGAATCCTGAAGAAAAATCTGGTGATAGTGCGGAG</left_flank>
        <right_flank>CTGGCGCGAGTAAACATCATCACGCTCGAATAATAATATGTTTCTGATAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACTTCTAGTAAATAGTGAAACGAACCAACTCCGCTAAAATATACTCCCGTTTACTTTCTCAGACCCTGATGTTATTCTTACCAATGTATAATCTCATTTATCAGAAGTGGGACAAACACTTCGCTTTTAGCAGTTAAACTTTCCAATGCACTGGTACATATGTAGAAATGATAATCGCAGTCTATATCAGAGCTGATGATTGATGAAATGAAATGAGGGAAGGTGAGGATCAGAATGGATTTGAATGCAATTTGAAAGATCTGAAACAATTGATCTGGTGTTCACATTAAGTAACAAACATATTGACGATTGCTGAGTGAGGTGAAAAGTAAACTTACATTCAAAATTGGTTCCTCTTTTGGCCCCTCTAGTGATATTTCTGGTAGTACAGGGTTCATTGCCTGAAACACGAGTTATCGATTTTTTGTTAGGAGAGAAGTTGGAAAGCTCCAGTAAAGCTAGTGAATCCTGAAGAAAAATCTGGTGATAGTGCGGAGACTGGCGCGAGTAAACATCATCACGCTCGAATAATAATATGTTTCTGATAACTACTAGGAGAAAGTAAAAATTATCTCGGCTCTAAAAAACTTGGTTTCTGCTTGAAAGCTTCTGCTAATGATGGGGAGCACTGATTTGTAAGACAACGAGAAAAGGGGATGACGGGGATCTGAAAGTGTACCACGTCTACAGCAGTTCATAATATGAAAAAAGTATATGTTGACCAGAGTTGCCCACGACTGAGGATAAGGCGAAAGACCAATCTCCACCTGATGCTACCAAAGTGGAGTCACAAATCGAGAATCCAGAGGTATTACTTTCAGAATCAAATCAATTTAAAATATTGTCTGCACAGGTGTCTGATGCAGACGATCGCGCTTGGCGTCGGGCTCACATGATTGAGCTTTTTAGCGCAATATACTATCTAGTGCTCGTAGCTTTCATTCCAACCCACTTCTGGTTCTATGATAACATCATGGCCGCTGCGATAATCTCGGCAC</canonical>
            <polymorphic>GTACTTCTAGTAAATAGTGAAACGAACCAACTCCGCTAAAATATACTCCCGTTTACTTTCTCAGACCCTGATGTTATTCTTACCAATGTATAATCTCATTTATCAGAAGTGGGACAAACACTTCGCTTTTAGCAGTTAAACTTTCCAATGCACTGGTACATATGTAGAAATGATAATCGCAGTCTATATCAGAGCTGATGATTGATGAAATGAAATGAGGGAAGGTGAGGATCAGAATGGATTTGAATGCAATTTGAAAGATCTGAAACAATTGATCTGGTGTTCACATTAAGTAACAAACATATTGACGATTGCTGAGTGAGGTGAAAAGTAAACTTACATTCAAAATTGGTTCCTCTTTTGGCCCCTCTAGTGATATTTCTGGTAGTACAGGGTTCATTGCCTGAAACACGAGTTATCGATTTTTTGTTAGGAGAGAAGTTGGAAAGCTCCAGTAAAGCTAGTGAATCCTGAAGAAAAATCTGGTGATAGTGCGGAGMCTGGCGCGAGTAAACATCATCACGCTCGAATAATAATATGTTTCTGATAACTACTAGGAGAAAGTAAAAATTATCTCGGCTCTAAAAAACTTGGTTTCTGCTTGAAAGCTTCTGCTAATGATGGGGAGCACTGATTTGTAAGACAACGAGAAAAGGGGATGACGGGGATCTGAAAGTGTACCACGTCTACAGCAGTTCATAATATGAAAAAAGTATATGTTGACCAGAGTTGCCCACGACTGAGGATAAGGCGAAAGACCAATCTCCACCTGATGCTACCAAAGTGGAGTCACAAATCGAGAATCCAGAGGTATTACTTTCAGAATCAAATCAATTTAAAATATTGTCTGCACAGGTGTCTGATGCAGACGATCGCGCTTGGCGTCGGGCTCACATGATTGAGCTTTTTAGCGCAATATACTATCTAGTGCTCGTAGCTTTCATTCCAACCCACTTCTGGTTCTATGATAACATCATGGCCGCTGCGATAATCTCGGCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTTACATTCAAAATTGGTTC</pcr_primer_p1>
		<pcr_primer_p2>AGCCGAGATAATTTTTACTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAACTTACATTCAAAATTGGTTCCTCTTTTGGCCCCTCTAGTGATATTTCTGGTAGTACAGGGTTCATTGCCTGAAACACGAGTTATCGATTTTTTGTTAGGAGAGAAGTTGGAAAGCTCCAGTAAAGCTAGTGAATCCTGAAGAAAAATCTGGTGATAGTGCGGAGACTGGCGCGAGTAAACATCATCACGCTCGAATAATAATATGTTTCTGATAACTACTAGGAGAAAGTAAAAATTATCTCGGCT</canonical_amplicon>
		<polymorphic_amplicon>AAACTTACATTCAAAATTGGTTCCTCTTTTGGCCCCTCTAGTGATATTTCTGGTAGTACAGGGTTCATTGCCTGAAACACGAGTTATCGATTTTTTGTTAGGAGAGAAGTTGGAAAGCTCCAGTAAAGCTAGTGAATCCTGAAGAAAAATCTGGTGATAGTGCGGAGMCTGGCGCGAGTAAACATCATCACGCTCGAATAATAATATGTTTCTGATAACTACTAGGAGAAAGTAAAAATTATCTCGGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1912</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>642954</contig_pos>
        <strand>+</strand>
        <context>GCTAGTGAAT[C/T]CTGAAGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGATTTTTTGTTAGGAGAGAAGTTGGAAAGCTCCAGTAAAGCTAGTGAAT</left_flank>
        <right_flank>CTGAAGAAAAATCTGGTGATAGTGCGGAGACTGGCGCGAGTAAACATCAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTGAACATATCCATTTTCTTGTTGTTTCTGTACTTCTAGTAAATAGTGAAACGAACCAACTCCGCTAAAATATACTCCCGTTTACTTTCTCAGACCCTGATGTTATTCTTACCAATGTATAATCTCATTTATCAGAAGTGGGACAAACACTTCGCTTTTAGCAGTTAAACTTTCCAATGCACTGGTACATATGTAGAAATGATAATCGCAGTCTATATCAGAGCTGATGATTGATGAAATGAAATGAGGGAAGGTGAGGATCAGAATGGATTTGAATGCAATTTGAAAGATCTGAAACAATTGATCTGGTGTTCACATTAAGTAACAAACATATTGACGATTGCTGAGTGAGGTGAAAAGTAAACTTACATTCAAAATTGGTTCCTCTTTTGGCCCCTCTAGTGATATTTCTGGTAGTACAGGGTTCATTGCCTGAAACACGAGTTATCGATTTTTTGTTAGGAGAGAAGTTGGAAAGCTCCAGTAAAGCTAGTGAATCCTGAAGAAAAATCTGGTGATAGTGCGGAGACTGGCGCGAGTAAACATCATCACGCTCGAATAATAATATGTTTCTGATAACTACTAGGAGAAAGTAAAAATTATCTCGGCTCTAAAAAACTTGGTTTCTGCTTGAAAGCTTCTGCTAATGATGGGGAGCACTGATTTGTAAGACAACGAGAAAAGGGGATGACGGGGATCTGAAAGTGTACCACGTCTACAGCAGTTCATAATATGAAAAAAGTATATGTTGACCAGAGTTGCCCACGACTGAGGATAAGGCGAAAGACCAATCTCCACCTGATGCTACCAAAGTGGAGTCACAAATCGAGAATCCAGAGGTATTACTTTCAGAATCAAATCAATTTAAAATATTGTCTGCACAGGTGTCTGATGCAGACGATCGCGCTTGGCGTCGGGCTCACATGATTGAGCTTTTTAGCGCAATATACTATCTAGTGCTCGTAGCTTTCATTCCAACCCACTTCTGGTTCTATGATA</canonical>
            <polymorphic>AGTGAACATATCCATTTTCTTGTTGTTTCTGTACTTCTAGTAAATAGTGAAACGAACCAACTCCGCTAAAATATACTCCCGTTTACTTTCTCAGACCCTGATGTTATTCTTACCAATGTATAATCTCATTTATCAGAAGTGGGACAAACACTTCGCTTTTAGCAGTTAAACTTTCCAATGCACTGGTACATATGTAGAAATGATAATCGCAGTCTATATCAGAGCTGATGATTGATGAAATGAAATGAGGGAAGGTGAGGATCAGAATGGATTTGAATGCAATTTGAAAGATCTGAAACAATTGATCTGGTGTTCACATTAAGTAACAAACATATTGACGATTGCTGAGTGAGGTGAAAAGTAAACTTACATTCAAAATTGGTTCCTCTTTTGGCCCCTCTAGTGATATTTCTGGTAGTACAGGGTTCATTGCCTGAAACACGAGTTATCGATTTTTTGTTAGGAGAGAAGTTGGAAAGCTCCAGTAAAGCTAGTGAATYCTGAAGAAAAATCTGGTGATAGTGCGGAGACTGGCGCGAGTAAACATCATCACGCTCGAATAATAATATGTTTCTGATAACTACTAGGAGAAAGTAAAAATTATCTCGGCTCTAAAAAACTTGGTTTCTGCTTGAAAGCTTCTGCTAATGATGGGGAGCACTGATTTGTAAGACAACGAGAAAAGGGGATGACGGGGATCTGAAAGTGTACCACGTCTACAGCAGTTCATAATATGAAAAAAGTATATGTTGACCAGAGTTGCCCACGACTGAGGATAAGGCGAAAGACCAATCTCCACCTGATGCTACCAAAGTGGAGTCACAAATCGAGAATCCAGAGGTATTACTTTCAGAATCAAATCAATTTAAAATATTGTCTGCACAGGTGTCTGATGCAGACGATCGCGCTTGGCGTCGGGCTCACATGATTGAGCTTTTTAGCGCAATATACTATCTAGTGCTCGTAGCTTTCATTCCAACCCACTTCTGGTTCTATGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>496 321 147 22 14</canonical_bands>
                <polymorphic_bands>817 147 22 14</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>500 328 165 7</canonical_bands>
                <polymorphic_bands>828 165 7</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>496 335 147 22</canonical_bands>
                <polymorphic_bands>831 147 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTTACATTCAAAATTGGTTC</pcr_primer_p1>
		<pcr_primer_p2>AGCCGAGATAATTTTTACTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAACTTACATTCAAAATTGGTTCCTCTTTTGGCCCCTCTAGTGATATTTCTGGTAGTACAGGGTTCATTGCCTGAAACACGAGTTATCGATTTTTTGTTAGGAGAGAAGTTGGAAAGCTCCAGTAAAGCTAGTGAATCCTGAAGAAAAATCTGGTGATAGTGCGGAGACTGGCGCGAGTAAACATCATCACGCTCGAATAATAATATGTTTCTGATAACTACTAGGAGAAAGTAAAAATTATCTCGGCT</canonical_amplicon>
		<polymorphic_amplicon>AAACTTACATTCAAAATTGGTTCCTCTTTTGGCCCCTCTAGTGATATTTCTGGTAGTACAGGGTTCATTGCCTGAAACACGAGTTATCGATTTTTTGTTAGGAGAGAAGTTGGAAAGCTCCAGTAAAGCTAGTGAATYCTGAAGAAAAATCTGGTGATAGTGCGGAGACTGGCGCGAGTAAACATCATCACGCTCGAATAATAATATGTTTCTGATAACTACTAGGAGAAAGTAAAAATTATCTCGGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1913</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>642856</contig_pos>
        <strand>+</strand>
        <context>TGGCCCCTCT[A/G]GTGATATTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGTGAAAAGTAAACTTACATTCAAAATTGGTTCCTCTTTTGGCCCCTCT</left_flank>
        <right_flank>GTGATATTTCTGGTAGTACAGGGTTCATTGCCTGAAACACGAGTTATCGA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTTCATCATTTCGATGGTGTGTTTCCTTATTTTGGAAATTTTGTAAAGTTCAGCAAGAGTGCCTTTGTCTTTGGCGGTGACGGCGTAGGTCCAGTGAGTGAACATATCCATTTTCTTGTTGTTTCTGTACTTCTAGTAAATAGTGAAACGAACCAACTCCGCTAAAATATACTCCCGTTTACTTTCTCAGACCCTGATGTTATTCTTACCAATGTATAATCTCATTTATCAGAAGTGGGACAAACACTTCGCTTTTAGCAGTTAAACTTTCCAATGCACTGGTACATATGTAGAAATGATAATCGCAGTCTATATCAGAGCTGATGATTGATGAAATGAAATGAGGGAAGGTGAGGATCAGAATGGATTTGAATGCAATTTGAAAGATCTGAAACAATTGATCTGGTGTTCACATTAAGTAACAAACATATTGACGATTGCTGAGTGAGGTGAAAAGTAAACTTACATTCAAAATTGGTTCCTCTTTTGGCCCCTCTAGTGATATTTCTGGTAGTACAGGGTTCATTGCCTGAAACACGAGTTATCGATTTTTTGTTAGGAGAGAAGTTGGAAAGCTCCAGTAAAGCTAGTGAATCCTGAAGAAAAATCTGGTGATAGTGCGGAGACTGGCGCGAGTAAACATCATCACGCTCGAATAATAATATGTTTCTGATAACTACTAGGAGAAAGTAAAAATTATCTCGGCTCTAAAAAACTTGGTTTCTGCTTGAAAGCTTCTGCTAATGATGGGGAGCACTGATTTGTAAGACAACGAGAAAAGGGGATGACGGGGATCTGAAAGTGTACCACGTCTACAGCAGTTCATAATATGAAAAAAGTATATGTTGACCAGAGTTGCCCACGACTGAGGATAAGGCGAAAGACCAATCTCCACCTGATGCTACCAAAGTGGAGTCACAAATCGAGAATCCAGAGGTATTACTTTCAGAATCAAATCAATTTAAAATATTGTCTGCACAGGTGTCTGATGCAGACGA</canonical>
            <polymorphic>TGTTTCATCATTTCGATGGTGTGTTTCCTTATTTTGGAAATTTTGTAAAGTTCAGCAAGAGTGCCTTTGTCTTTGGCGGTGACGGCGTAGGTCCAGTGAGTGAACATATCCATTTTCTTGTTGTTTCTGTACTTCTAGTAAATAGTGAAACGAACCAACTCCGCTAAAATATACTCCCGTTTACTTTCTCAGACCCTGATGTTATTCTTACCAATGTATAATCTCATTTATCAGAAGTGGGACAAACACTTCGCTTTTAGCAGTTAAACTTTCCAATGCACTGGTACATATGTAGAAATGATAATCGCAGTCTATATCAGAGCTGATGATTGATGAAATGAAATGAGGGAAGGTGAGGATCAGAATGGATTTGAATGCAATTTGAAAGATCTGAAACAATTGATCTGGTGTTCACATTAAGTAACAAACATATTGACGATTGCTGAGTGAGGTGAAAAGTAAACTTACATTCAAAATTGGTTCCTCTTTTGGCCCCTCTRGTGATATTTCTGGTAGTACAGGGTTCATTGCCTGAAACACGAGTTATCGATTTTTTGTTAGGAGAGAAGTTGGAAAGCTCCAGTAAAGCTAGTGAATCCTGAAGAAAAATCTGGTGATAGTGCGGAGACTGGCGCGAGTAAACATCATCACGCTCGAATAATAATATGTTTCTGATAACTACTAGGAGAAAGTAAAAATTATCTCGGCTCTAAAAAACTTGGTTTCTGCTTGAAAGCTTCTGCTAATGATGGGGAGCACTGATTTGTAAGACAACGAGAAAAGGGGATGACGGGGATCTGAAAGTGTACCACGTCTACAGCAGTTCATAATATGAAAAAAGTATATGTTGACCAGAGTTGCCCACGACTGAGGATAAGGCGAAAGACCAATCTCCACCTGATGCTACCAAAGTGGAGTCACAAATCGAGAATCCAGAGGTATTACTTTCAGAATCAAATCAATTTAAAATATTGTCTGCACAGGTGTCTGATGCAGACGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>363 318 135 93 91</canonical_bands>
                <polymorphic_bands>454 318 135 93</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTAACAAACATATTGACGATTG</pcr_primer_p1>
		<pcr_primer_p2>ATATTATTATTCGAGCGTGATGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGTAACAAACATATTGACGATTGCTGAGTGAGGTGAAAAGTAAACTTACATTCAAAATTGGTTCCTCTTTTGGCCCCTCTAGTGATATTTCTGGTAGTACAGGGTTCATTGCCTGAAACACGAGTTATCGATTTTTTGTTAGGAGAGAAGTTGGAAAGCTCCAGTAAAGCTAGTGAATCCTGAAGAAAAATCTGGTGATAGTGCGGAGACTGGCGCGAGTAAACATCATCACGCTCGAATAATAATAT</canonical_amplicon>
		<polymorphic_amplicon>AAGTAACAAACATATTGACGATTGCTGAGTGAGGTGAAAAGTAAACTTACATTCAAAATTGGTTCCTCTTTTGGCCCCTCTRGTGATATTTCTGGTAGTACAGGGTTCATTGCCTGAAACACGAGTTATCGATTTTTTGTTAGGAGAGAAGTTGGAAAGCTCCAGTAAAGCTAGTGAATCCTGAAGAAAAATCTGGTGATAGTGCGGAGACTGGCGCGAGTAAACATCATCACGCTCGAATAATAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1914</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>642596</contig_pos>
        <strand>+</strand>
        <context>ATCAGAAGTG[C/G]GACAAACACT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAGACCCTGATGTTATTCTTACCAATGTATAATCTCATTTATCAGAAGTG</left_flank>
        <right_flank>GACAAACACTTCGCTTTTAGCAGTTAAACTTTCCAATGCACTGGTACATA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAACGAGAGAAGGCACGAGATAATCTATCTGCTTCGGTGGAATTCATCTGACTTCTTCTTCTCGAAATCGAATAACAACTGTGACGTCTTCGAAGATCTTGAAAGTGGAAATGAATAGGGATCGAAATGAACTCAAAAATATATATTTATGTAGTTTTGAAAAATAGGATGCAATTAACTGGTTGACAAATATGAACTGTGGGTTTCAAAAATACAAAAATGAGAATAAAATCAGCAGATATTAATTATTTAGGATATTGTTTCATCATTTCGATGGTGTGTTTCCTTATTTTGGAAATTTTGTAAAGTTCAGCAAGAGTGCCTTTGTCTTTGGCGGTGACGGCGTAGGTCCAGTGAGTGAACATATCCATTTTCTTGTTGTTTCTGTACTTCTAGTAAATAGTGAAACGAACCAACTCCGCTAAAATATACTCCCGTTTACTTTCTCAGACCCTGATGTTATTCTTACCAATGTATAATCTCATTTATCAGAAGTGGGACAAACACTTCGCTTTTAGCAGTTAAACTTTCCAATGCACTGGTACATATGTAGAAATGATAATCGCAGTCTATATCAGAGCTGATGATTGATGAAATGAAATGAGGGAAGGTGAGGATCAGAATGGATTTGAATGCAATTTGAAAGATCTGAAACAATTGATCTGGTGTTCACATTAAGTAACAAACATATTGACGATTGCTGAGTGAGGTGAAAAGTAAACTTACATTCAAAATTGGTTCCTCTTTTGGCCCCTCTAGTGATATTTCTGGTAGTACAGGGTTCATTGCCTGAAACACGAGTTATCGATTTTTTGTTAGGAGAGAAGTTGGAAAGCTCCAGTAAAGCTAGTGAATCCTGAAGAAAAATCTGGTGATAGTGCGGAGACTGGCGCGAGTAAACATCATCACGCTCGAATAATAATATGTTTCTGATAACTACTAGGAGAAAGTAAAAATTATCTCGGCTCTAAAAAACTTGGTTTCTGCTTGAAAGCTTC</canonical>
            <polymorphic>AAAAACGAGAGAAGGCACGAGATAATCTATCTGCTTCGGTGGAATTCATCTGACTTCTTCTTCTCGAAATCGAATAACAACTGTGACGTCTTCGAAGATCTTGAAAGTGGAAATGAATAGGGATCGAAATGAACTCAAAAATATATATTTATGTAGTTTTGAAAAATAGGATGCAATTAACTGGTTGACAAATATGAACTGTGGGTTTCAAAAATACAAAAATGAGAATAAAATCAGCAGATATTAATTATTTAGGATATTGTTTCATCATTTCGATGGTGTGTTTCCTTATTTTGGAAATTTTGTAAAGTTCAGCAAGAGTGCCTTTGTCTTTGGCGGTGACGGCGTAGGTCCAGTGAGTGAACATATCCATTTTCTTGTTGTTTCTGTACTTCTAGTAAATAGTGAAACGAACCAACTCCGCTAAAATATACTCCCGTTTACTTTCTCAGACCCTGATGTTATTCTTACCAATGTATAATCTCATTTATCAGAAGTGSGACAAACACTTCGCTTTTAGCAGTTAAACTTTCCAATGCACTGGTACATATGTAGAAATGATAATCGCAGTCTATATCAGAGCTGATGATTGATGAAATGAAATGAGGGAAGGTGAGGATCAGAATGGATTTGAATGCAATTTGAAAGATCTGAAACAATTGATCTGGTGTTCACATTAAGTAACAAACATATTGACGATTGCTGAGTGAGGTGAAAAGTAAACTTACATTCAAAATTGGTTCCTCTTTTGGCCCCTCTAGTGATATTTCTGGTAGTACAGGGTTCATTGCCTGAAACACGAGTTATCGATTTTTTGTTAGGAGAGAAGTTGGAAAGCTCCAGTAAAGCTAGTGAATCCTGAAGAAAAATCTGGTGATAGTGCGGAGACTGGCGCGAGTAAACATCATCACGCTCGAATAATAATATGTTTCTGATAACTACTAGGAGAAAGTAAAAATTATCTCGGCTCTAAAAAACTTGGTTTCTGCTTGAAAGCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTGAACATATCCATTTTCTTG</pcr_primer_p1>
		<pcr_primer_p2>CTCATTTCATTTCATCAATCATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGTGAACATATCCATTTTCTTGTTGTTTCTGTACTTCTAGTAAATAGTGAAACGAACCAACTCCGCTAAAATATACTCCCGTTTACTTTCTCAGACCCTGATGTTATTCTTACCAATGTATAATCTCATTTATCAGAAGTGGGACAAACACTTCGCTTTTAGCAGTTAAACTTTCCAATGCACTGGTACATATGTAGAAATGATAATCGCAGTCTATATCAGAGCTGATGATTGATGAAATGAAATGAG</canonical_amplicon>
		<polymorphic_amplicon>GAGTGAACATATCCATTTTCTTGTTGTTTCTGTACTTCTAGTAAATAGTGAAACGAACCAACTCCGCTAAAATATACTCCCGTTTACTTTCTCAGACCCTGATGTTATTCTTACCAATGTATAATCTCATTTATCAGAAGTGSGACAAACACTTCGCTTTTAGCAGTTAAACTTTCCAATGCACTGGTACATATGTAGAAATGATAATCGCAGTCTATATCAGAGCTGATGATTGATGAAATGAAATGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1915</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>661300</contig_pos>
        <strand>+</strand>
        <context>AACCATAGAC[A/G]TTGATGAGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTCACTCGGAGAATGCTCAACAACTCAATACGAGGAGAAAACCATAGAC</left_flank>
        <right_flank>TTGATGAGCACGAGGAAGAACAAGGTCCTGAAGACGATCAAGAGAACACT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAACAAGCGGTGCGGCAACAGCAAATTCAGCAGAAAGCGATTCTACAGAAGGATATTGATGCTCGTCGTGCGGAACAGGCACGTGTCGAGGAGATTGCTCTCAAAAGGATTGCTCAAGAAAAAGCCGAGTTGGAAGAAGCTAAGAAGAAGGAAGAACTGGGGAAGATGGGAATGGCTGGCCAAACCGAGCAGGTTAATTCAGCAGAAGCAGATATTACAAAGGAAACGGAACCTCTCCCTCAACCTGGCACCTGTGAAACTTCTGTATCCGTTGATCCAGATTCAAATGATACCCCGAATATTCATGATGAAACAATTCTGGCCGGAAATGTGACCCATATCGTTGAGAAAACTATCGATGAAAGTAAAGATGAGAGCGAAGAAAAGAACAAAGAAGATAACATGGAAGAAAGCAAAGACTTTACGGAGATGACAGTTGACAATACGATCTCACTCGGAGAATGCTCAACAACTCAATACGAGGAGAAAACCATAGACATTGATGAGCACGAGGAAGAACAAGGTCCTGAAGACGATCAAGAGAACACTGAGAAAATTCGCGAAGAGGACTTGAATCGAGAAATGATCAGTTACGTCAACAGATATCATCAAGGAACAATGGTTGCTCTCAATGAGAAGGGAGTCTTGAAGCATCATCGAATTGCCAAACAGCTCCGTGAGTCGCAAGAACTTCAAGAGCTTATTGCACTTCACGAAGCCAGAGTAGCTAGTGGTGTTACAACTGAATATGTTGCCAAGCCTGTTGAAGAAGAGGACGAAGAAAAGGAAAAAGAGCCAGAATTCAAGATGGACCAGTTGGAACTGGCCAAATCAATCTTGCGACAAGGTGTTGAAGAGTCTTCTGATGACTCTGAGGAGTCAGAAGAAGAAGCGGAAGGTATGTTTTTGTGTTTACCTTGATAAGGTGTTCATTCTTTTTTATTACAGAAGCGGAGCGAGACATGGGAACTAGTGTGACAACTGAGAAAATGCCACGTG</canonical>
            <polymorphic>ACAACAAGCGGTGCGGCAACAGCAAATTCAGCAGAAAGCGATTCTACAGAAGGATATTGATGCTCGTCGTGCGGAACAGGCACGTGTCGAGGAGATTGCTCTCAAAAGGATTGCTCAAGAAAAAGCCGAGTTGGAAGAAGCTAAGAAGAAGGAAGAACTGGGGAAGATGGGAATGGCTGGCCAAACCGAGCAGGTTAATTCAGCAGAAGCAGATATTACAAAGGAAACGGAACCTCTCCCTCAACCTGGCACCTGTGAAACTTCTGTATCCGTTGATCCAGATTCAAATGATACCCCGAATATTCATGATGAAACAATTCTGGCCGGAAATGTGACCCATATCGTTGAGAAAACTATCGATGAAAGTAAAGATGAGAGCGAAGAAAAGAACAAAGAAGATAACATGGAAGAAAGCAAAGACTTTACGGAGATGACAGTTGACAATACGATCTCACTCGGAGAATGCTCAACAACTCAATACGAGGAGAAAACCATAGACRTTGATGAGCACGAGGAAGAACAAGGTCCTGAAGACGATCAAGAGAACACTGAGAAAATTCGCGAAGAGGACTTGAATCGAGAAATGATCAGTTACGTCAACAGATATCATCAAGGAACAATGGTTGCTCTCAATGAGAAGGGAGTCTTGAAGCATCATCGAATTGCCAAACAGCTCCGTGAGTCGCAAGAACTTCAAGAGCTTATTGCACTTCACGAAGCCAGAGTAGCTAGTGGTGTTACAACTGAATATGTTGCCAAGCCTGTTGAAGAAGAGGACGAAGAAAAGGAAAAAGAGCCAGAATTCAAGATGGACCAGTTGGAACTGGCCAAATCAATCTTGCGACAAGGTGTTGAAGAGTCTTCTGATGACTCTGAGGAGTCAGAAGAAGAAGCGGAAGGTATGTTTTTGTGTTTACCTTGATAAGGTGTTCATTCTTTTTTATTACAGAAGCGGAGCGAGACATGGGAACTAGTGTGACAACTGAGAAAATGCCACGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGAAAACTATCGATGAAAGTAA</pcr_primer_p1>
		<pcr_primer_p2>GTAACTGATCATTTCTCGATTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAGAAAACTATCGATGAAAGTAAAGATGAGAGCGAAGAAAAGAACAAAGAAGATAACATGGAAGAAAGCAAAGACTTTACGGAGATGACAGTTGACAATACGATCTCACTCGGAGAATGCTCAACAACTCAATACGAGGAGAAAACCATAGACATTGATGAGCACGAGGAAGAACAAGGTCCTGAAGACGATCAAGAGAACACTGAGAAAATTCGCGAAGAGGACTTGAATCGAGAAATGATCAGTTAC</canonical_amplicon>
		<polymorphic_amplicon>TGAGAAAACTATCGATGAAAGTAAAGATGAGAGCGAAGAAAAGAACAAAGAAGATAACATGGAAGAAAGCAAAGACTTTACGGAGATGACAGTTGACAATACGATCTCACTCGGAGAATGCTCAACAACTCAATACGAGGAGAAAACCATAGACRTTGATGAGCACGAGGAAGAACAAGGTCCTGAAGACGATCAAGAGAACACTGAGAAAATTCGCGAAGAGGACTTGAATCGAGAAATGATCAGTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1916</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>661099</contig_pos>
        <strand>+</strand>
        <context>TGATACCCCG[A/C]ATATTCATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCACCTGTGAAACTTCTGTATCCGTTGATCCAGATTCAAATGATACCCCG</left_flank>
        <right_flank>ATATTCATGATGAAACAATTCTGGCCGGAAATGTGACCCATATCGTTGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATCTTCTCTTTTTCTTTCAGCAAATTCTCATCGCACTCCAAAAACAACAAATCGCCGCCGGTCGAGGCAATATGTCCACCGATGTGTCGCCACAGGAGCACGCCGAACAAGTTGCACTTCTTCACAACCTCCAAAATCCGGTGATTCTTCAACCGTTGATGCAGAATCCCGAGTTTGCCGCGACACTCGCCATGGCTCAACAACAAGCGGTGCGGCAACAGCAAATTCAGCAGAAAGCGATTCTACAGAAGGATATTGATGCTCGTCGTGCGGAACAGGCACGTGTCGAGGAGATTGCTCTCAAAAGGATTGCTCAAGAAAAAGCCGAGTTGGAAGAAGCTAAGAAGAAGGAAGAACTGGGGAAGATGGGAATGGCTGGCCAAACCGAGCAGGTTAATTCAGCAGAAGCAGATATTACAAAGGAAACGGAACCTCTCCCTCAACCTGGCACCTGTGAAACTTCTGTATCCGTTGATCCAGATTCAAATGATACCCCGAATATTCATGATGAAACAATTCTGGCCGGAAATGTGACCCATATCGTTGAGAAAACTATCGATGAAAGTAAAGATGAGAGCGAAGAAAAGAACAAAGAAGATAACATGGAAGAAAGCAAAGACTTTACGGAGATGACAGTTGACAATACGATCTCACTCGGAGAATGCTCAACAACTCAATACGAGGAGAAAACCATAGACATTGATGAGCACGAGGAAGAACAAGGTCCTGAAGACGATCAAGAGAACACTGAGAAAATTCGCGAAGAGGACTTGAATCGAGAAATGATCAGTTACGTCAACAGATATCATCAAGGAACAATGGTTGCTCTCAATGAGAAGGGAGTCTTGAAGCATCATCGAATTGCCAAACAGCTCCGTGAGTCGCAAGAACTTCAAGAGCTTATTGCACTTCACGAAGCCAGAGTAGCTAGTGGTGTTACAACTGAATATGTTGCCAAGCCTGTTGAAGAAGAGGACGAAGAAAAGGAAAAAGAGCCA</canonical>
            <polymorphic>AAATCTTCTCTTTTTCTTTCAGCAAATTCTCATCGCACTCCAAAAACAACAAATCGCCGCCGGTCGAGGCAATATGTCCACCGATGTGTCGCCACAGGAGCACGCCGAACAAGTTGCACTTCTTCACAACCTCCAAAATCCGGTGATTCTTCAACCGTTGATGCAGAATCCCGAGTTTGCCGCGACACTCGCCATGGCTCAACAACAAGCGGTGCGGCAACAGCAAATTCAGCAGAAAGCGATTCTACAGAAGGATATTGATGCTCGTCGTGCGGAACAGGCACGTGTCGAGGAGATTGCTCTCAAAAGGATTGCTCAAGAAAAAGCCGAGTTGGAAGAAGCTAAGAAGAAGGAAGAACTGGGGAAGATGGGAATGGCTGGCCAAACCGAGCAGGTTAATTCAGCAGAAGCAGATATTACAAAGGAAACGGAACCTCTCCCTCAACCTGGCACCTGTGAAACTTCTGTATCCGTTGATCCAGATTCAAATGATACCCCGMATATTCATGATGAAACAATTCTGGCCGGAAATGTGACCCATATCGTTGAGAAAACTATCGATGAAAGTAAAGATGAGAGCGAAGAAAAGAACAAAGAAGATAACATGGAAGAAAGCAAAGACTTTACGGAGATGACAGTTGACAATACGATCTCACTCGGAGAATGCTCAACAACTCAATACGAGGAGAAAACCATAGACATTGATGAGCACGAGGAAGAACAAGGTCCTGAAGACGATCAAGAGAACACTGAGAAAATTCGCGAAGAGGACTTGAATCGAGAAATGATCAGTTACGTCAACAGATATCATCAAGGAACAATGGTTGCTCTCAATGAGAAGGGAGTCTTGAAGCATCATCGAATTGCCAAACAGCTCCGTGAGTCGCAAGAACTTCAAGAGCTTATTGCACTTCACGAAGCCAGAGTAGCTAGTGGTGTTACAACTGAATATGTTGCCAAGCCTGTTGAAGAAGAGGACGAAGAAAAGGAAAAAGAGCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGCAGAAGCAGATATTACAAAG</pcr_primer_p1>
		<pcr_primer_p2>ATCGTATTGTCAACTGTCATCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGCAGAAGCAGATATTACAAAGGAAACGGAACCTCTCCCTCAACCTGGCACCTGTGAAACTTCTGTATCCGTTGATCCAGATTCAAATGATACCCCGAATATTCATGATGAAACAATTCTGGCCGGAAATGTGACCCATATCGTTGAGAAAACTATCGATGAAAGTAAAGATGAGAGCGAAGAAAAGAACAAAGAAGATAACATGGAAGAAAGCAAAGACTTTACGGAGATGACAGTTGACAATACGAT</canonical_amplicon>
		<polymorphic_amplicon>CAGCAGAAGCAGATATTACAAAGGAAACGGAACCTCTCCCTCAACCTGGCACCTGTGAAACTTCTGTATCCGTTGATCCAGATTCAAATGATACCCCGMATATTCATGATGAAACAATTCTGGCCGGAAATGTGACCCATATCGTTGAGAAAACTATCGATGAAAGTAAAGATGAGAGCGAAGAAAAGAACAAAGAAGATAACATGGAAGAAAGCAAAGACTTTACGGAGATGACAGTTGACAATACGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1917</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>731683</contig_pos>
        <strand>+</strand>
        <context>TCGGTTCTGT[C/T]TTYACAATGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACATCAATATCAGCCTCGTGTTCCAGTTTTCTTTTACAGGTCGGTTCTGT</left_flank>
        <right_flank>TTTACAATGACCGATCGAGGACTGACGTCGGTGCTCTCCACTTCAAACTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTGGCTCCAGGAGGCGGGATAGGCATCATTGGGGAGGGAAGCATAACCGGAGGCATCGGACCTGCTTGGAATTTGCGGAAAATGTCGATTTGGATTTGCAAATCTCTGATGGTTTTTTCGTAAGCACGACATTTATCCTCGACGGCTACAAGCTTTCCCCGGGCGACCTGAAACATTGAAATTTGTTATTTTTTGCAGATGCTCTATTAGCGGATCAAATCAGAAACATTGATGTTACAAACCTGACAATCGAAGCACTTTGAGCTCTCTCCGGAATGACTCGAAGACCCTCCGGAAATGTGCGAGTCAGAAACTGTTGGGGATGGTTGATCATGTGAGATATGAATGTCTTTCTCATCGATATTCATTTTTAGTGGTGGTTCTCCCTAAAAAATAACATTTAATAGGCGTCTTATTGAGTTTTAGTTTCTTACGTCGTCACCCTCCACATCAATATCAGCCTCGTGTTCCAGTTTTCTTTTACAGGTCGGTTCTGTTTTTACAATGACCGATCGAGGACTGACGTCGGTGCTCTCCACTTCAAACTTGAGATCTTCCTCAGTGGTTTGCACTTCCAACTCGTCATAATCGCTCATGTTGGGAGACTCGAGAGAATCCTTAAATTTGAAACACTTTAGAAATCAGAAAACGTGTGTTTGATACTATTTTGCTCACCTTGGAAGGAGTTTGTTGGGCTGCCAGATTAAGTGTCGAATTGTTCACAGGGTGATTGTTTGCAAGCCATGCTGATAAGAATTGAGAGGGACCCATATTCGATAGATCCAGTGGGAAAACTGATTTTGAAGATTCGGGACTTTTCAACAGATTCGGGAAAATGGATCCAATGTTATTGTTGTTTGCTGCAGCTTGGAGCATTCTCTTTTGCATCATAAGATCCGCCGAAAACACTGGTGAGCCTCTTGGTGATCCTTGTTCCGAGCTACTATCCACTGCTGAAAGAAATTCCGTAGCCTCCCAATGTTGACTCGGTCGCCTCC</canonical>
            <polymorphic>TGTTGGCTCCAGGAGGCGGGATAGGCATCATTGGGGAGGGAAGCATAACCGGAGGCATCGGACCTGCTTGGAATTTGCGGAAAATGTCGATTTGGATTTGCAAATCTCTGATGGTTTTTTCGTAAGCACGACATTTATCCTCGACGGCTACAAGCTTTCCCCGGGCGACCTGAAACATTGAAATTTGTTATTTTTTGCAGATGCTCTATTAGCGGATCAAATCAGAAACATTGATGTTACAAACCTGACAATCGAAGCACTTTGAGCTCTCTCCGGAATGACTCGAAGACCCTCCGGAAATGTGCGAGTCAGAAACTGTTGGGGATGGTTGATCATGTGAGATATGAATGTCTTTCTCATCGATATTCATTTTTAGTGGTGGTTCTCCCTAAAAAATAACATTTAATAGGCGTCTTATTGAGTTTTAGTTTCTTACGTCGTCACCCTCCACATCAATATCAGCCTCGTGTTCCAGTTTTCTTTTACAGGTCGGTTCTGTYTTTACAATGACCGATCGAGGACTGACGTCGGTGCTCTCCACTTCAAACTTGAGATCTTCCTCAGTGGTTTGCACTTCCAACTCGTCATAATCGCTCATGTTGGGAGACTCGAGAGAATCCTTAAATTTGAAACACTTTAGAAATCAGAAAACGTGTGTTTGATACTATTTTGCTCACCTTGGAAGGAGTTTGTTGGGCTGCCAGATTAAGTGTCGAATTGTTCACAGGGTGATTGTTTGCAAGCCATGCTGATAAGAATTGAGAGGGACCCATATTCGATAGATCCAGTGGGAAAACTGATTTTGAAGATTCGGGACTTTTCAACAGATTCGGGAAAATGGATCCAATGTTATTGTTGTTTGCTGCAGCTTGGAGCATTCTCTTTTGCATCATAAGATCCGCCGAAAACACTGGTGAGCCTCTTGGTGATCCTTGTTCCGAGCTACTATCCACTGCTGAAAGAAATTCCGTAGCCTCCCAATGTTGACTCGGTCGCCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGCGTCTTATTGAGTTTTAGTT</pcr_primer_p1>
		<pcr_primer_p2>CACACGTTTTCTGATTTCTAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGCGTCTTATTGAGTTTTAGTTTCTTACGTCGTCACCCTCCACATCAATATCAGCCTCGTGTTCCAGTTTTCTTTTACAGGTCGGTTCTGTTTTTACAATGACCGATCGAGGACTGACGTCGGTGCTCTCCACTTCAAACTTGAGATCTTCCTCAGTGGTTTGCACTTCCAACTCGTCATAATCGCTCATGTTGGGAGACTCGAGAGAATCCTTAAATTTGAAACACTTTAGAAATCAGAAAACGTGTG</canonical_amplicon>
		<polymorphic_amplicon>AGGCGTCTTATTGAGTTTTAGTTTCTTACGTCGTCACCCTCCACATCAATATCAGCCTCGTGTTCCAGTTTTCTTTTACAGGTCGGTTCTGTYTTTACAATGACCGATCGAGGACTGACGTCGGTGCTCTCCACTTCAAACTTGAGATCTTCCTCAGTGGTTTGCACTTCCAACTCGTCATAATCGCTCATGTTGGGAGACTCGAGAGAATCCTTAAATTTGAAACACTTTAGAAATCAGAAAACGTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1918</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>731686</contig_pos>
        <strand>+</strand>
        <context>GTTCTGTYTT[C/T]ACAATGACCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAATATCAGCCTCGTGTTCCAGTTTTCTTTTACAGGTCGGTTCTGTTTT</left_flank>
        <right_flank>ACAATGACCGATCGAGGACTGACGTCGGTGCTCTCCACTTCAAACTTGAG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCTCCAGGAGGCGGGATAGGCATCATTGGGGAGGGAAGCATAACCGGAGGCATCGGACCTGCTTGGAATTTGCGGAAAATGTCGATTTGGATTTGCAAATCTCTGATGGTTTTTTCGTAAGCACGACATTTATCCTCGACGGCTACAAGCTTTCCCCGGGCGACCTGAAACATTGAAATTTGTTATTTTTTGCAGATGCTCTATTAGCGGATCAAATCAGAAACATTGATGTTACAAACCTGACAATCGAAGCACTTTGAGCTCTCTCCGGAATGACTCGAAGACCCTCCGGAAATGTGCGAGTCAGAAACTGTTGGGGATGGTTGATCATGTGAGATATGAATGTCTTTCTCATCGATATTCATTTTTAGTGGTGGTTCTCCCTAAAAAATAACATTTAATAGGCGTCTTATTGAGTTTTAGTTTCTTACGTCGTCACCCTCCACATCAATATCAGCCTCGTGTTCCAGTTTTCTTTTACAGGTCGGTTCTGTTTTTACAATGACCGATCGAGGACTGACGTCGGTGCTCTCCACTTCAAACTTGAGATCTTCCTCAGTGGTTTGCACTTCCAACTCGTCATAATCGCTCATGTTGGGAGACTCGAGAGAATCCTTAAATTTGAAACACTTTAGAAATCAGAAAACGTGTGTTTGATACTATTTTGCTCACCTTGGAAGGAGTTTGTTGGGCTGCCAGATTAAGTGTCGAATTGTTCACAGGGTGATTGTTTGCAAGCCATGCTGATAAGAATTGAGAGGGACCCATATTCGATAGATCCAGTGGGAAAACTGATTTTGAAGATTCGGGACTTTTCAACAGATTCGGGAAAATGGATCCAATGTTATTGTTGTTTGCTGCAGCTTGGAGCATTCTCTTTTGCATCATAAGATCCGCCGAAAACACTGGTGAGCCTCTTGGTGATCCTTGTTCCGAGCTACTATCCACTGCTGAAAGAAATTCCGTAGCCTCCCAATGTTGACTCGGTCGCCTCCTAC</canonical>
            <polymorphic>TGGCTCCAGGAGGCGGGATAGGCATCATTGGGGAGGGAAGCATAACCGGAGGCATCGGACCTGCTTGGAATTTGCGGAAAATGTCGATTTGGATTTGCAAATCTCTGATGGTTTTTTCGTAAGCACGACATTTATCCTCGACGGCTACAAGCTTTCCCCGGGCGACCTGAAACATTGAAATTTGTTATTTTTTGCAGATGCTCTATTAGCGGATCAAATCAGAAACATTGATGTTACAAACCTGACAATCGAAGCACTTTGAGCTCTCTCCGGAATGACTCGAAGACCCTCCGGAAATGTGCGAGTCAGAAACTGTTGGGGATGGTTGATCATGTGAGATATGAATGTCTTTCTCATCGATATTCATTTTTAGTGGTGGTTCTCCCTAAAAAATAACATTTAATAGGCGTCTTATTGAGTTTTAGTTTCTTACGTCGTCACCCTCCACATCAATATCAGCCTCGTGTTCCAGTTTTCTTTTACAGGTCGGTTCTGTTTTYACAATGACCGATCGAGGACTGACGTCGGTGCTCTCCACTTCAAACTTGAGATCTTCCTCAGTGGTTTGCACTTCCAACTCGTCATAATCGCTCATGTTGGGAGACTCGAGAGAATCCTTAAATTTGAAACACTTTAGAAATCAGAAAACGTGTGTTTGATACTATTTTGCTCACCTTGGAAGGAGTTTGTTGGGCTGCCAGATTAAGTGTCGAATTGTTCACAGGGTGATTGTTTGCAAGCCATGCTGATAAGAATTGAGAGGGACCCATATTCGATAGATCCAGTGGGAAAACTGATTTTGAAGATTCGGGACTTTTCAACAGATTCGGGAAAATGGATCCAATGTTATTGTTGTTTGCTGCAGCTTGGAGCATTCTCTTTTGCATCATAAGATCCGCCGAAAACACTGGTGAGCCTCTTGGTGATCCTTGTTCCGAGCTACTATCCACTGCTGAAAGAAATTCCGTAGCCTCCCAATGTTGACTCGGTCGCCTCCTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGCGTCTTATTGAGTTTTAGTT</pcr_primer_p1>
		<pcr_primer_p2>CACACGTTTTCTGATTTCTAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGCGTCTTATTGAGTTTTAGTTTCTTACGTCGTCACCCTCCACATCAATATCAGCCTCGTGTTCCAGTTTTCTTTTACAGGTCGGTTCTGTTTTTACAATGACCGATCGAGGACTGACGTCGGTGCTCTCCACTTCAAACTTGAGATCTTCCTCAGTGGTTTGCACTTCCAACTCGTCATAATCGCTCATGTTGGGAGACTCGAGAGAATCCTTAAATTTGAAACACTTTAGAAATCAGAAAACGTGTG</canonical_amplicon>
		<polymorphic_amplicon>AGGCGTCTTATTGAGTTTTAGTTTCTTACGTCGTCACCCTCCACATCAATATCAGCCTCGTGTTCCAGTTTTCTTTTACAGGTCGGTTCTGTTTTYACAATGACCGATCGAGGACTGACGTCGGTGCTCTCCACTTCAAACTTGAGATCTTCCTCAGTGGTTTGCACTTCCAACTCGTCATAATCGCTCATGTTGGGAGACTCGAGAGAATCCTTAAATTTGAAACACTTTAGAAATCAGAAAACGTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1919</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>734665</contig_pos>
        <strand>+</strand>
        <context>CTCCGGAGAA[A/G]AAGGTCGTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGCGTACAACACTCGAAACGTTATTCAGACGCGGCTCTTCTCCGGAGAA</left_flank>
        <right_flank>AAGGTCGTCGGCGGCTGACACCGACTAGGGTATTTACCACTTTTTCGATA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACAAAAGCGGAAAAAAACTGTACAAAAGAAACATTTAAAAAACCTCAATACAGCGGTATAATAATAATAATTTGTTTCAACACTATTGTTAGTCAAGCTCCTGCTATACTGATTCACCCTTGAACACAAAACTTACTTGGAATCTCATTGTTGCATGTGGTACATGTATAACTTTTGAAATGGGCTTGCATTCGATGACGACTCAGCGAGGAACTGTGGCAGAAGACCTTTTGACAAATCGAGCACGGGAAGGAGCCTTTTAAGTCGGGACGTTTGAGTTCGGCACGGTAAGGCATTCTGGAACAAGGCATTTAAAATTAAAAACAAAAGAACATTTAAAAATAGAGAATAGAAATACTGGGAGGACGGAATATGAGAAATAAGGAAGAATGAAGAACCGAAGAAGGAAGAGGCTACCACAACCACCTCCACCGTACTTGAAAAATTTCGCGTACAACACTCGAAACGTTATTCAGACGCGGCTCTTCTCCGGAGAAGAAGGTCGTCGGCGGCTGACACCGACTAGGGTATTTACCACTTTTTCGATACTTATTATGAGAAGTAGCGAAAGAGCATACATAGCAGCCCATTGGACAATGCTGGGTACTGTAGGCTCAAGTAGCAGCGTGAAGGTAAAAGTGCTCGAGAGGCGGAAATTTTGGAAGAGGTTTGAAATGTTCAAGTTCACGGAGCAGTCAGTATCCAAGAATCAACCTCAGCTTCTGTTAACTACAGTACCCATTGCTTGACCCTTGTTAAATGGCAAGCAGGAAAGTGGTGGTGGTGAAGTAGCGAGCTGAAGGCTATGACTCCTCCCGCCTACCCGAAATCGGGGGGAGGCGGGGCTATACCATGCGGGGAGTAGAGATAGTCGCGGGGGGCGAGGTGAGAGAAAATGGCAACAAGCCCTATCGAGATAGTAAGTGGCATCCATTAGAGCTAGAAAAGTGCATTGGTAATAAAGATTTTTGGAAAAAGGACATCTTAAAAAAGGAGCC</canonical>
            <polymorphic>CAACAAAAGCGGAAAAAAACTGTACAAAAGAAACATTTAAAAAACCTCAATACAGCGGTATAATAATAATAATTTGTTTCAACACTATTGTTAGTCAAGCTCCTGCTATACTGATTCACCCTTGAACACAAAACTTACTTGGAATCTCATTGTTGCATGTGGTACATGTATAACTTTTGAAATGGGCTTGCATTCGATGACGACTCAGCGAGGAACTGTGGCAGAAGACCTTTTGACAAATCGAGCACGGGAAGGAGCCTTTTAAGTCGGGACGTTTGAGTTCGGCACGGTAAGGCATTCTGGAACAAGGCATTTAAAATTAAAAACAAAAGAACATTTAAAAATAGAGAATAGAAATACTGGGAGGACGGAATATGAGAAATAAGGAAGAATGAAGAACCGAAGAAGGAAGAGGCTACCACAACCACCTCCACCGTACTTGAAAAATTTCGCGTACAACACTCGAAACGTTATTCAGACGCGGCTCTTCTCCGGAGAARAAGGTCGTCGGCGGCTGACACCGACTAGGGTATTTACCACTTTTTCGATACTTATTATGAGAAGTAGCGAAAGAGCATACATAGCAGCCCATTGGACAATGCTGGGTACTGTAGGCTCAAGTAGCAGCGTGAAGGTAAAAGTGCTCGAGAGGCGGAAATTTTGGAAGAGGTTTGAAATGTTCAAGTTCACGGAGCAGTCAGTATCCAAGAATCAACCTCAGCTTCTGTTAACTACAGTACCCATTGCTTGACCCTTGTTAAATGGCAAGCAGGAAAGTGGTGGTGGTGAAGTAGCGAGCTGAAGGCTATGACTCCTCCCGCCTACCCGAAATCGGGGGGAGGCGGGGCTATACCATGCGGGGAGTAGAGATAGTCGCGGGGGGCGAGGTGAGAGAAAATGGCAACAAGCCCTATCGAGATAGTAAGTGGCATCCATTAGAGCTAGAAAAGTGCATTGGTAATAAAGATTTTTGGAAAAAGGACATCTTAAAAAAGGAGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGAATAGAAATACTGGGAGGA</pcr_primer_p1>
		<pcr_primer_p2>CTATGTATGCTCTTTCGCTACTT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AGAGAATAGAAATACTGGGAGGACGGAATATGAGAAATAAGGAAGAATGAAGAACCGAAGAAGGAAGAGGCTACCACAACCACCTCCACCGTACTTGAAAAATTTCGCGTACAACACTCGAAACGTTATTCAGACGCGGCTCTTCTCCGGAGAAGAAGGTCGTCGGCGGCTGACACCGACTAGGGTATTTACCACTTTTTCGATACTTATTATGAGAAGTAGCGAAAGAGCATACATAG</canonical_amplicon>
		<polymorphic_amplicon>AGAGAATAGAAATACTGGGAGGACGGAATATGAGAAATAAGGAAGAATGAAGAACCGAAGAAGGAAGAGGCTACCACAACCACCTCCACCGTACTTGAAAAATTTCGCGTACAACACTCGAAACGTTATTCAGACGCGGCTCTTCTCCGGAGAARAAGGTCGTCGGCGGCTGACACCGACTAGGGTATTTACCACTTTTTCGATACTTATTATGAGAAGTAGCGAAAGAGCATACATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1920</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>734823</contig_pos>
        <strand>+</strand>
        <context>AGAGGCGGAA[A/G]TTTTGGAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTGTAGGCTCAAGTAGCAGCGTGAAGGTAAAAGTGCTCGAGAGGCGGAA</left_flank>
        <right_flank>TTTTGGAAGAGGTTTGAAATGTTCAAGTTCACGGAGCAGTCAGTATCCAA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGGTACATGTATAACTTTTGAAATGGGCTTGCATTCGATGACGACTCAGCGAGGAACTGTGGCAGAAGACCTTTTGACAAATCGAGCACGGGAAGGAGCCTTTTAAGTCGGGACGTTTGAGTTCGGCACGGTAAGGCATTCTGGAACAAGGCATTTAAAATTAAAAACAAAAGAACATTTAAAAATAGAGAATAGAAATACTGGGAGGACGGAATATGAGAAATAAGGAAGAATGAAGAACCGAAGAAGGAAGAGGCTACCACAACCACCTCCACCGTACTTGAAAAATTTCGCGTACAACACTCGAAACGTTATTCAGACGCGGCTCTTCTCCGGAGAAGAAGGTCGTCGGCGGCTGACACCGACTAGGGTATTTACCACTTTTTCGATACTTATTATGAGAAGTAGCGAAAGAGCATACATAGCAGCCCATTGGACAATGCTGGGTACTGTAGGCTCAAGTAGCAGCGTGAAGGTAAAAGTGCTCGAGAGGCGGAAATTTTGGAAGAGGTTTGAAATGTTCAAGTTCACGGAGCAGTCAGTATCCAAGAATCAACCTCAGCTTCTGTTAACTACAGTACCCATTGCTTGACCCTTGTTAAATGGCAAGCAGGAAAGTGGTGGTGGTGAAGTAGCGAGCTGAAGGCTATGACTCCTCCCGCCTACCCGAAATCGGGGGGAGGCGGGGCTATACCATGCGGGGAGTAGAGATAGTCGCGGGGGGCGAGGTGAGAGAAAATGGCAACAAGCCCTATCGAGATAGTAAGTGGCATCCATTAGAGCTAGAAAAGTGCATTGGTAATAAAGATTTTTGGAAAAAGGACATCTTAAAAAAGGAGCCGGAGCCTCGGAACAGATGCTCACAAGCTGCTATGAAATCATGCCATTGCACTATCTATTTGCTGTGAGAAAAAACTAAAACGCGTTCTCAAAATTTCAACGAAGCATCTGTGTGACCCGCAAAGAAAGAAAAGAATGACGACAGTCGAAAAAGACATC</canonical>
            <polymorphic>GTGGTACATGTATAACTTTTGAAATGGGCTTGCATTCGATGACGACTCAGCGAGGAACTGTGGCAGAAGACCTTTTGACAAATCGAGCACGGGAAGGAGCCTTTTAAGTCGGGACGTTTGAGTTCGGCACGGTAAGGCATTCTGGAACAAGGCATTTAAAATTAAAAACAAAAGAACATTTAAAAATAGAGAATAGAAATACTGGGAGGACGGAATATGAGAAATAAGGAAGAATGAAGAACCGAAGAAGGAAGAGGCTACCACAACCACCTCCACCGTACTTGAAAAATTTCGCGTACAACACTCGAAACGTTATTCAGACGCGGCTCTTCTCCGGAGAAGAAGGTCGTCGGCGGCTGACACCGACTAGGGTATTTACCACTTTTTCGATACTTATTATGAGAAGTAGCGAAAGAGCATACATAGCAGCCCATTGGACAATGCTGGGTACTGTAGGCTCAAGTAGCAGCGTGAAGGTAAAAGTGCTCGAGAGGCGGAARTTTTGGAAGAGGTTTGAAATGTTCAAGTTCACGGAGCAGTCAGTATCCAAGAATCAACCTCAGCTTCTGTTAACTACAGTACCCATTGCTTGACCCTTGTTAAATGGCAAGCAGGAAAGTGGTGGTGGTGAAGTAGCGAGCTGAAGGCTATGACTCCTCCCGCCTACCCGAAATCGGGGGGAGGCGGGGCTATACCATGCGGGGAGTAGAGATAGTCGCGGGGGGCGAGGTGAGAGAAAATGGCAACAAGCCCTATCGAGATAGTAAGTGGCATCCATTAGAGCTAGAAAAGTGCATTGGTAATAAAGATTTTTGGAAAAAGGACATCTTAAAAAAGGAGCCGGAGCCTCGGAACAGATGCTCACAAGCTGCTATGAAATCATGCCATTGCACTATCTATTTGCTGTGAGAAAAAACTAAAACGCGTTCTCAAAATTTCAACGAAGCATCTGTGTGACCCGCAAAGAAAGAAAAGAATGACGACAGTCGAAAAAGACATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>435 287 211 67</canonical_bands>
                <polymorphic_bands>646 287 67</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>435 211 159 128 67</canonical_bands>
                <polymorphic_bands>646 159 128 67</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGACACCGACTAGGGTATTTA</pcr_primer_p1>
		<pcr_primer_p2>CAAGCAATGGGTACTGTAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>CTGACACCGACTAGGGTATTTACCACTTTTTCGATACTTATTATGAGAAGTAGCGAAAGAGCATACATAGCAGCCCATTGGACAATGCTGGGTACTGTAGGCTCAAGTAGCAGCGTGAAGGTAAAAGTGCTCGAGAGGCGGAAATTTTGGAAGAGGTTTGAAATGTTCAAGTTCACGGAGCAGTCAGTATCCAAGAATCAACCTCAGCTTCTGTTAACTACAGTACCCATTGCTTG</canonical_amplicon>
		<polymorphic_amplicon>CTGACACCGACTAGGGTATTTACCACTTTTTCGATACTTATTATGAGAAGTAGCGAAAGAGCATACATAGCAGCCCATTGGACAATGCTGGGTACTGTAGGCTCAAGTAGCAGCGTGAAGGTAAAAGTGCTCGAGAGGCGGAARTTTTGGAAGAGGTTTGAAATGTTCAAGTTCACGGAGCAGTCAGTATCCAAGAATCAACCTCAGCTTCTGTTAACTACAGTACCCATTGCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1921</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>734941</contig_pos>
        <strand>+</strand>
        <context>CAAGCAGGAA[A/G]GTGGTGGTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTAACTACAGTACCCATTGCTTGACCCTTGTTAAATGGCAAGCAGGAA</left_flank>
        <right_flank>GTGGTGGTGGTGAAGTAGCGAGCTGAAGGCTATGACTCCTCCCGCCTACC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGTTCGGCACGGTAAGGCATTCTGGAACAAGGCATTTAAAATTAAAAACAAAAGAACATTTAAAAATAGAGAATAGAAATACTGGGAGGACGGAATATGAGAAATAAGGAAGAATGAAGAACCGAAGAAGGAAGAGGCTACCACAACCACCTCCACCGTACTTGAAAAATTTCGCGTACAACACTCGAAACGTTATTCAGACGCGGCTCTTCTCCGGAGAAGAAGGTCGTCGGCGGCTGACACCGACTAGGGTATTTACCACTTTTTCGATACTTATTATGAGAAGTAGCGAAAGAGCATACATAGCAGCCCATTGGACAATGCTGGGTACTGTAGGCTCAAGTAGCAGCGTGAAGGTAAAAGTGCTCGAGAGGCGGAAATTTTGGAAGAGGTTTGAAATGTTCAAGTTCACGGAGCAGTCAGTATCCAAGAATCAACCTCAGCTTCTGTTAACTACAGTACCCATTGCTTGACCCTTGTTAAATGGCAAGCAGGAAAGTGGTGGTGGTGAAGTAGCGAGCTGAAGGCTATGACTCCTCCCGCCTACCCGAAATCGGGGGGAGGCGGGGCTATACCATGCGGGGAGTAGAGATAGTCGCGGGGGGCGAGGTGAGAGAAAATGGCAACAAGCCCTATCGAGATAGTAAGTGGCATCCATTAGAGCTAGAAAAGTGCATTGGTAATAAAGATTTTTGGAAAAAGGACATCTTAAAAAAGGAGCCGGAGCCTCGGAACAGATGCTCACAAGCTGCTATGAAATCATGCCATTGCACTATCTATTTGCTGTGAGAAAAAACTAAAACGCGTTCTCAAAATTTCAACGAAGCATCTGTGTGACCCGCAAAGAAAGAAAAGAATGACGACAGTCGAAAAAGACATCACAATTGCTTTACTGACCGGCAGCATGATTGCTTCGAGTTGAGGATCAGGCGTATCTTTGATTCTCGTGTTCTCTTTTTTTTTCTCATCTTGGAGAGAGTGACATGGGGGCACAACAC</canonical>
            <polymorphic>TGAGTTCGGCACGGTAAGGCATTCTGGAACAAGGCATTTAAAATTAAAAACAAAAGAACATTTAAAAATAGAGAATAGAAATACTGGGAGGACGGAATATGAGAAATAAGGAAGAATGAAGAACCGAAGAAGGAAGAGGCTACCACAACCACCTCCACCGTACTTGAAAAATTTCGCGTACAACACTCGAAACGTTATTCAGACGCGGCTCTTCTCCGGAGAAGAAGGTCGTCGGCGGCTGACACCGACTAGGGTATTTACCACTTTTTCGATACTTATTATGAGAAGTAGCGAAAGAGCATACATAGCAGCCCATTGGACAATGCTGGGTACTGTAGGCTCAAGTAGCAGCGTGAAGGTAAAAGTGCTCGAGAGGCGGAAATTTTGGAAGAGGTTTGAAATGTTCAAGTTCACGGAGCAGTCAGTATCCAAGAATCAACCTCAGCTTCTGTTAACTACAGTACCCATTGCTTGACCCTTGTTAAATGGCAAGCAGGAARGTGGTGGTGGTGAAGTAGCGAGCTGAAGGCTATGACTCCTCCCGCCTACCCGAAATCGGGGGGAGGCGGGGCTATACCATGCGGGGAGTAGAGATAGTCGCGGGGGGCGAGGTGAGAGAAAATGGCAACAAGCCCTATCGAGATAGTAAGTGGCATCCATTAGAGCTAGAAAAGTGCATTGGTAATAAAGATTTTTGGAAAAAGGACATCTTAAAAAAGGAGCCGGAGCCTCGGAACAGATGCTCACAAGCTGCTATGAAATCATGCCATTGCACTATCTATTTGCTGTGAGAAAAAACTAAAACGCGTTCTCAAAATTTCAACGAAGCATCTGTGTGACCCGCAAAGAAAGAAAAGAATGACGACAGTCGAAAAAGACATCACAATTGCTTTACTGACCGGCAGCATGATTGCTTCGAGTTGAGGATCAGGCGTATCTTTGATTCTCGTGTTCTCTTTTTTTTTCTCATCTTGGAGAGAGTGACATGGGGGCACAACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACCTCAGCTTCTGTTAACTAC</pcr_primer_p1>
		<pcr_primer_p2>TATTACCAATGCACTTTTCTAGC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAACCTCAGCTTCTGTTAACTACAGTACCCATTGCTTGACCCTTGTTAAATGGCAAGCAGGAAAGTGGTGGTGGTGAAGTAGCGAGCTGAAGGCTATGACTCCTCCCGCCTACCCGAAATCGGGGGGAGGCGGGGCTATACCATGCGGGGAGTAGAGATAGTCGCGGGGGGCGAGGTGAGAGAAAATGGCAACAAGCCCTATCGAGATAGTAAGTGGCATCCATTAGAGCTAGAAAAGTGCATTGGTAATA</canonical_amplicon>
		<polymorphic_amplicon>CAACCTCAGCTTCTGTTAACTACAGTACCCATTGCTTGACCCTTGTTAAATGGCAAGCAGGAARGTGGTGGTGGTGAAGTAGCGAGCTGAAGGCTATGACTCCTCCCGCCTACCCGAAATCGGGGGGAGGCGGGGCTATACCATGCGGGGAGTAGAGATAGTCGCGGGGGGCGAGGTGAGAGAAAATGGCAACAAGCCCTATCGAGATAGTAAGTGGCATCCATTAGAGCTAGAAAAGTGCATTGGTAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1922</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>736945</contig_pos>
        <strand>+</strand>
        <context>GCTTTTTGAT[C/T]ATAAACGTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGAAAGGATGAAGAATGAAAAATAGAGAAGAAAAAATAGCTTTTTGAT</left_flank>
        <right_flank>ATAAACGTCAGAAGCTGCTAGCACATTGTATTTTGACTCAATTTAGTCAG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGATTACTGTAACAATAAAACAGGAAGAGAAAGAATCCTGGTTCAAACAATTACGCAACCCCAAGAAACGAATGAGACGAGCTTTGCTTTTTTAGGTCAAACGCCAAGCTAATCGTTTAAATCGGCGATCGAAATGGGAGGAGGCGGTTACGTAAGAAGGTTGAAAAATGAGGGTAAGTTTCCGGACAGACTTGGAACATTTACCGAAACCGTCTTTTGAGAAGAGGGCACCTGAACGTTTTTTATTTTGTCGGAGGAGTAAAATCGAAATAATTGTTCTCTTCTCAAGGAACGTTTTCAACCTAGAAATTGTTGAAAAACTGTTGTGTAGGTGGATTGGCATTTTTGAGATGAACACAAAAAAAGTTGAAAAAGAAAAATCGAAACTGAATCGAGAGGGGTTCTTAAACCAGGAATCTAGTAAATGATGTGGTTTTCGAAATTGTTTTTGGAAAGGATGAAGAATGAAAAATAGAGAAGAAAAAATAGCTTTTTGATTATAAACGTCAGAAGCTGCTAGCACATTGTATTTTGACTCAATTTAGTCAGAATCCTTTGGGACAAAATCGTGAGTAATAACAATTTCTTTGGAAAAATAAGCTGAAAAATAAGCTAGATTTGAAAAATGGCAAACATATCAATGAGTTTGGGACAACTGTGCGATTTCGCACTATCAATGGCCTAATTCCCTGATGATGATCAACCTTCATTTGAAATACCACCCTGGCTATCATAAAAAGTAAAGCAAGTCACCGGTCGTTAAACCACCACTACCACAACCTTCTGGAGCTTATCTGTTTAGTAGTTTTTATCATTTAGTTCTACAACATGGTTTCCTCTTTAGGTTGGCGCATTTTTACGGTCATTTAGGATTGGAAAAGTGTGATCGACCTTGCGATTGTTGCGCAATTAGCCAATGTGCCCGCCGGCTGCCTGCCGCACCTCTTCGAATCTTTCTTTTCTCGTCCGGCGACGTCGTGTTGCGAGATTTTCGTTGCC</canonical>
            <polymorphic>AGGATTACTGTAACAATAAAACAGGAAGAGAAAGAATCCTGGTTCAAACAATTACGCAACCCCAAGAAACGAATGAGACGAGCTTTGCTTTTTTAGGTCAAACGCCAAGCTAATCGTTTAAATCGGCGATCGAAATGGGAGGAGGCGGTTACGTAAGAAGGTTGAAAAATGAGGGTAAGTTTCCGGACAGACTTGGAACATTTACCGAAACCGTCTTTTGAGAAGAGGGCACCTGAACGTTTTTTATTTTGTCGGAGGAGTAAAATCGAAATAATTGTTCTCTTCTCAAGGAACGTTTTCAACCTAGAAATTGTTGAAAAACTGTTGTGTAGGTGGATTGGCATTTTTGAGATGAACACAAAAAAAGTTGAAAAAGAAAAATCGAAACTGAATCGAGAGGGGTTCTTAAACCAGGAATCTAGTAAATGATGTGGTTTTCGAAATTGTTTTTGGAAAGGATGAAGAATGAAAAATAGAGAAGAAAAAATAGCTTTTTGATYATAAACGTCAGAAGCTGCTAGCACATTGTATTTTGACTCAATTTAGTCAGAATCCTTTGGGACAAAATCGTGAGTAATAACAATTTCTTTGGAAAAATAAGCTGAAAAATAAGCTAGATTTGAAAAATGGCAAACATATCAATGAGTTTGGGACAACTGTGCGATTTCGCACTATCAATGGCCTAATTCCCTGATGATGATCAACCTTCATTTGAAATACCACCCTGGCTATCATAAAAAGTAAAGCAAGTCACCGGTCGTTAAACCACCACTACCACAACCTTCTGGAGCTTATCTGTTTAGTAGTTTTTATCATTTAGTTCTACAACATGGTTTCCTCTTTAGGTTGGCGCATTTTTACGGTCATTTAGGATTGGAAAAGTGTGATCGACCTTGCGATTGTTGCGCAATTAGCCAATGTGCCCGCCGGCTGCCTGCCGCACCTCTTCGAATCTTTCTTTTCTCGTCCGGCGACGTCGTGTTGCGAGATTTTCGTTGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTGAAAAACTGTTGTGTAGG</pcr_primer_p1>
		<pcr_primer_p2>CCAAAGGATTCTGACTAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTTGAAAAACTGTTGTGTAGGTGGATTGGCATTTTTGAGATGAACACAAAAAAAGTTGAAAAAGAAAAATCGAAACTGAATCGAGAGGGGTTCTTAAACCAGGAATCTAGTAAATGATGTGGTTTTCGAAATTGTTTTTGGAAAGGATGAAGAATGAAAAATAGAGAAGAAAAAATAGCTTTTTGATTATAAACGTCAGAAGCTGCTAGCACATTGTATTTTGACTCAATTTAGTCAGAATCCTTTGG</canonical_amplicon>
		<polymorphic_amplicon>TGTTGAAAAACTGTTGTGTAGGTGGATTGGCATTTTTGAGATGAACACAAAAAAAGTTGAAAAAGAAAAATCGAAACTGAATCGAGAGGGGTTCTTAAACCAGGAATCTAGTAAATGATGTGGTTTTCGAAATTGTTTTTGGAAAGGATGAAGAATGAAAAATAGAGAAGAAAAAATAGCTTTTTGATYATAAACGTCAGAAGCTGCTAGCACATTGTATTTTGACTCAATTTAGTCAGAATCCTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1923</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>736730</contig_pos>
        <strand>+</strand>
        <context>TTGTTCTCTT[C/T]TCAAGGAACG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAACGTTTTTTATTTTGTCGGAGGAGTAAAATCGAAATAATTGTTCTCTT</left_flank>
        <right_flank>TCAAGGAACGTTTTCAACCTAGAAATTGTTGAAAAACTGTTGTGTAGGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAAGATGTAGGTTGAAAAATTGAAGAAAAGGGAGAGGAGGGGAAGGTAAAAAGAGAAATGAGGGACAACAAAGACGCAGTTTGCACTTTCTTTAGACGTTCTGTATTACTAATTTTACAATCCATGCCAATGTGGAGGATATTCAAATACTTTTTCTCTCGAAGATTAGCATGAAGAAGTGGAGTTTTATGACTTGTTGGCTCCAGAAAAACGAGGATTACTGTAACAATAAAACAGGAAGAGAAAGAATCCTGGTTCAAACAATTACGCAACCCCAAGAAACGAATGAGACGAGCTTTGCTTTTTTAGGTCAAACGCCAAGCTAATCGTTTAAATCGGCGATCGAAATGGGAGGAGGCGGTTACGTAAGAAGGTTGAAAAATGAGGGTAAGTTTCCGGACAGACTTGGAACATTTACCGAAACCGTCTTTTGAGAAGAGGGCACCTGAACGTTTTTTATTTTGTCGGAGGAGTAAAATCGAAATAATTGTTCTCTTCTCAAGGAACGTTTTCAACCTAGAAATTGTTGAAAAACTGTTGTGTAGGTGGATTGGCATTTTTGAGATGAACACAAAAAAAGTTGAAAAAGAAAAATCGAAACTGAATCGAGAGGGGTTCTTAAACCAGGAATCTAGTAAATGATGTGGTTTTCGAAATTGTTTTTGGAAAGGATGAAGAATGAAAAATAGAGAAGAAAAAATAGCTTTTTGATTATAAACGTCAGAAGCTGCTAGCACATTGTATTTTGACTCAATTTAGTCAGAATCCTTTGGGACAAAATCGTGAGTAATAACAATTTCTTTGGAAAAATAAGCTGAAAAATAAGCTAGATTTGAAAAATGGCAAACATATCAATGAGTTTGGGACAACTGTGCGATTTCGCACTATCAATGGCCTAATTCCCTGATGATGATCAACCTTCATTTGAAATACCACCCTGGCTATCATAAAAAGTAAAGCAAGTCACCGGTCGTTAAACCACCACTACCACAACCTTC</canonical>
            <polymorphic>AAGAAGATGTAGGTTGAAAAATTGAAGAAAAGGGAGAGGAGGGGAAGGTAAAAAGAGAAATGAGGGACAACAAAGACGCAGTTTGCACTTTCTTTAGACGTTCTGTATTACTAATTTTACAATCCATGCCAATGTGGAGGATATTCAAATACTTTTTCTCTCGAAGATTAGCATGAAGAAGTGGAGTTTTATGACTTGTTGGCTCCAGAAAAACGAGGATTACTGTAACAATAAAACAGGAAGAGAAAGAATCCTGGTTCAAACAATTACGCAACCCCAAGAAACGAATGAGACGAGCTTTGCTTTTTTAGGTCAAACGCCAAGCTAATCGTTTAAATCGGCGATCGAAATGGGAGGAGGCGGTTACGTAAGAAGGTTGAAAAATGAGGGTAAGTTTCCGGACAGACTTGGAACATTTACCGAAACCGTCTTTTGAGAAGAGGGCACCTGAACGTTTTTTATTTTGTCGGAGGAGTAAAATCGAAATAATTGTTCTCTTYTCAAGGAACGTTTTCAACCTAGAAATTGTTGAAAAACTGTTGTGTAGGTGGATTGGCATTTTTGAGATGAACACAAAAAAAGTTGAAAAAGAAAAATCGAAACTGAATCGAGAGGGGTTCTTAAACCAGGAATCTAGTAAATGATGTGGTTTTCGAAATTGTTTTTGGAAAGGATGAAGAATGAAAAATAGAGAAGAAAAAATAGCTTTTTGATTATAAACGTCAGAAGCTGCTAGCACATTGTATTTTGACTCAATTTAGTCAGAATCCTTTGGGACAAAATCGTGAGTAATAACAATTTCTTTGGAAAAATAAGCTGAAAAATAAGCTAGATTTGAAAAATGGCAAACATATCAATGAGTTTGGGACAACTGTGCGATTTCGCACTATCAATGGCCTAATTCCCTGATGATGATCAACCTTCATTTGAAATACCACCCTGGCTATCATAAAAAGTAAAGCAAGTCACCGGTCGTTAAACCACCACTACCACAACCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACGTAAGAAGGTTGAAAAATG</pcr_primer_p1>
		<pcr_primer_p2>GATTCAGTTTCGATTTTTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTACGTAAGAAGGTTGAAAAATGAGGGTAAGTTTCCGGACAGACTTGGAACATTTACCGAAACCGTCTTTTGAGAAGAGGGCACCTGAACGTTTTTTATTTTGTCGGAGGAGTAAAATCGAAATAATTGTTCTCTTCTCAAGGAACGTTTTCAACCTAGAAATTGTTGAAAAACTGTTGTGTAGGTGGATTGGCATTTTTGAGATGAACACAAAAAAAGTTGAAAAAGAAAAATCGAAACTGAATC</canonical_amplicon>
		<polymorphic_amplicon>TTACGTAAGAAGGTTGAAAAATGAGGGTAAGTTTCCGGACAGACTTGGAACATTTACCGAAACCGTCTTTTGAGAAGAGGGCACCTGAACGTTTTTTATTTTGTCGGAGGAGTAAAATCGAAATAATTGTTCTCTTYTCAAGGAACGTTTTCAACCTAGAAATTGTTGAAAAACTGTTGTGTAGGTGGATTGGCATTTTTGAGATGAACACAAAAAAAGTTGAAAAAGAAAAATCGAAACTGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1924</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>736660</contig_pos>
        <strand>+</strand>
        <context>CCGAAACCGT[C/T]TTTTGAGAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATGAGGGTAAGTTTCCGGACAGACTTGGAACATTTACCGAAACCGT</left_flank>
        <right_flank>TTTTGAGAAGAGGGCACCTGAACGTTTTTTATTTTGTCGGAGGAGTAAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGTTGAAGGGATAAGGAAAACGGTTCAATATACTACATCAGAAGGCAGACAGGTGAACGCAAAGTGACAAGAAGATGTAGGTTGAAAAATTGAAGAAAAGGGAGAGGAGGGGAAGGTAAAAAGAGAAATGAGGGACAACAAAGACGCAGTTTGCACTTTCTTTAGACGTTCTGTATTACTAATTTTACAATCCATGCCAATGTGGAGGATATTCAAATACTTTTTCTCTCGAAGATTAGCATGAAGAAGTGGAGTTTTATGACTTGTTGGCTCCAGAAAAACGAGGATTACTGTAACAATAAAACAGGAAGAGAAAGAATCCTGGTTCAAACAATTACGCAACCCCAAGAAACGAATGAGACGAGCTTTGCTTTTTTAGGTCAAACGCCAAGCTAATCGTTTAAATCGGCGATCGAAATGGGAGGAGGCGGTTACGTAAGAAGGTTGAAAAATGAGGGTAAGTTTCCGGACAGACTTGGAACATTTACCGAAACCGTCTTTTGAGAAGAGGGCACCTGAACGTTTTTTATTTTGTCGGAGGAGTAAAATCGAAATAATTGTTCTCTTCTCAAGGAACGTTTTCAACCTAGAAATTGTTGAAAAACTGTTGTGTAGGTGGATTGGCATTTTTGAGATGAACACAAAAAAAGTTGAAAAAGAAAAATCGAAACTGAATCGAGAGGGGTTCTTAAACCAGGAATCTAGTAAATGATGTGGTTTTCGAAATTGTTTTTGGAAAGGATGAAGAATGAAAAATAGAGAAGAAAAAATAGCTTTTTGATTATAAACGTCAGAAGCTGCTAGCACATTGTATTTTGACTCAATTTAGTCAGAATCCTTTGGGACAAAATCGTGAGTAATAACAATTTCTTTGGAAAAATAAGCTGAAAAATAAGCTAGATTTGAAAAATGGCAAACATATCAATGAGTTTGGGACAACTGTGCGATTTCGCACTATCAATGGCCTAATTCCCTGATGATGATCAACCTTCATTTGA</canonical>
            <polymorphic>TGAGTTGAAGGGATAAGGAAAACGGTTCAATATACTACATCAGAAGGCAGACAGGTGAACGCAAAGTGACAAGAAGATGTAGGTTGAAAAATTGAAGAAAAGGGAGAGGAGGGGAAGGTAAAAAGAGAAATGAGGGACAACAAAGACGCAGTTTGCACTTTCTTTAGACGTTCTGTATTACTAATTTTACAATCCATGCCAATGTGGAGGATATTCAAATACTTTTTCTCTCGAAGATTAGCATGAAGAAGTGGAGTTTTATGACTTGTTGGCTCCAGAAAAACGAGGATTACTGTAACAATAAAACAGGAAGAGAAAGAATCCTGGTTCAAACAATTACGCAACCCCAAGAAACGAATGAGACGAGCTTTGCTTTTTTAGGTCAAACGCCAAGCTAATCGTTTAAATCGGCGATCGAAATGGGAGGAGGCGGTTACGTAAGAAGGTTGAAAAATGAGGGTAAGTTTCCGGACAGACTTGGAACATTTACCGAAACCGTYTTTTGAGAAGAGGGCACCTGAACGTTTTTTATTTTGTCGGAGGAGTAAAATCGAAATAATTGTTCTCTTCTCAAGGAACGTTTTCAACCTAGAAATTGTTGAAAAACTGTTGTGTAGGTGGATTGGCATTTTTGAGATGAACACAAAAAAAGTTGAAAAAGAAAAATCGAAACTGAATCGAGAGGGGTTCTTAAACCAGGAATCTAGTAAATGATGTGGTTTTCGAAATTGTTTTTGGAAAGGATGAAGAATGAAAAATAGAGAAGAAAAAATAGCTTTTTGATTATAAACGTCAGAAGCTGCTAGCACATTGTATTTTGACTCAATTTAGTCAGAATCCTTTGGGACAAAATCGTGAGTAATAACAATTTCTTTGGAAAAATAAGCTGAAAAATAAGCTAGATTTGAAAAATGGCAAACATATCAATGAGTTTGGGACAACTGTGCGATTTCGCACTATCAATGGCCTAATTCCCTGATGATGATCAACCTTCATTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACGTAAGAAGGTTGAAAAATG</pcr_primer_p1>
		<pcr_primer_p2>GATTCAGTTTCGATTTTTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTACGTAAGAAGGTTGAAAAATGAGGGTAAGTTTCCGGACAGACTTGGAACATTTACCGAAACCGTCTTTTGAGAAGAGGGCACCTGAACGTTTTTTATTTTGTCGGAGGAGTAAAATCGAAATAATTGTTCTCTTCTCAAGGAACGTTTTCAACCTAGAAATTGTTGAAAAACTGTTGTGTAGGTGGATTGGCATTTTTGAGATGAACACAAAAAAAGTTGAAAAAGAAAAATCGAAACTGAATC</canonical_amplicon>
		<polymorphic_amplicon>TTACGTAAGAAGGTTGAAAAATGAGGGTAAGTTTCCGGACAGACTTGGAACATTTACCGAAACCGTYTTTTGAGAAGAGGGCACCTGAACGTTTTTTATTTTGTCGGAGGAGTAAAATCGAAATAATTGTTCTCTTCTCAAGGAACGTTTTCAACCTAGAAATTGTTGAAAAACTGTTGTGTAGGTGGATTGGCATTTTTGAGATGAACACAAAAAAAGTTGAAAAAGAAAAATCGAAACTGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1926</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>773114</contig_pos>
        <strand>+</strand>
        <context>TGTCGGGAAA[A/G]AARTGGTAAM</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAA</left_flank>
        <right_flank>AAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTCTTTCTTTCGATTCTGAATTTTTGGCTTCAAAACGATCAGTCCAATGCTCGATGGTAGGAACAGTAGGAGATCCTTCTTTATCTATTTCTTTCTATTTCTTGTCAAAATCACAGTTTTTCAAACCATAAAGAAATGAAAATAAAATAGCATTTTGAAAGTGTAGACGATAAGGGACGGTAGCAAGCGACATGCTCGCCAACGACAATAAGTAGGAATGAGGCAAAGTGTGTACATCAAGTCCGTGAGATACTCTATCTAACAAAAACACATCCGTCAAGAAAAACAGTCCCACTGACCAGATCTCAAAGTTGAGCATTCAAAATCGAAAGAAACTTATTTGCCAACCTAATATGTGATACAAACGGATTTAAAATATAAAACGGTTGGTAGACAATTCTTTTTTTTAAACGGTTAAGCTTTTTGTGGTAAGACTCGGGGATGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAATCGGTCCCTCCACCTCTTCTGGCTCGAATTCAGGAAGGCTTTCGAGGAGTCTGACATCGCGTAAATGATGTGTTTCGATGTTGTGATGGACGATGCGCTCCATGTAAGAAGCTCTGAAGTTGCATTCATCGCATTTGAGTTTACAAATCATCGGATTCTCATAGTGTCCGTCGCGGTGCTTGCGGAACTCAATGATGTTTTGATTTCTATATCCACAGTCGATGCACTGGCGCGAGACTGAAAAAAAAACGATTACTTGTTCAGATGATATAGGATTTCCCAACTTCAAAGAACCAAAACATTTTGCAGA</canonical>
            <polymorphic>AAGTTCTTTCTTTCGATTCTGAATTTTTGGCTTCAAAACGATCAGTCCAATGCTCGATGGTAGGAACAGTAGGAGATCCTTCTTTATCTATTTCTTTCTATTTCTTGTCAAAATCACAGTTTTTCAAACCATAAAGAAATGAAAATAAAATAGCATTTTGAAAGTGTAGACGATAAGGGACGGTAGCAAGCGACATGCTCGCCAACGACAATAAGTAGGAATGAGGCAAAGTGTGTACATCAAGTCCGTGAGATACTCTATCTAACAAAAACACATCCGTCAAGAAAAACAGTCCCACTGACCAGATCTCAAAGTTGAGCATTCAAAATCGAAAGAAACTTATTTGCCAACCTAATATGTGATACAAACGGATTTAAAATATAAAACGGTTGGTAGACAATTCTTTTTTTTAAACGGTTAAGCTTTTTGTGGTAAGACTCGGGGATGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAARAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAATCGGTCCCTCCACCTCTTCTGGCTCGAATTCAGGAAGGCTTTCGAGGAGTCTGACATCGCGTAAATGATGTGTTTCGATGTTGTGATGGACGATGCGCTCCATGTAAGAAGCTCTGAAGTTGCATTCATCGCATTTGAGTTTACAAATCATCGGATTCTCATAGTGTCCGTCGCGGTGCTTGCGGAACTCAATGATGTTTTGATTTCTATATCCACAGTCGATGCACTGGCGCGAGACTGAAAAAAAAACGATTACTTGTTCAGATGATATAGGATTTCCCAACTTCAAAGAACCAAAACATTTTGCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAAATGACAATGTTACATGA</pcr_primer_p1>
		<pcr_primer_p2>ATTCGTACCACTCAGAAGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAAT</canonical_amplicon>
		<polymorphic_amplicon>TGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAARAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1927</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>773124</contig_pos>
        <strand>+</strand>
        <context>RAARTGGTAA[A/C]GCTGTAGGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAA</left_flank>
        <right_flank>GCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGATTCTGAATTTTTGGCTTCAAAACGATCAGTCCAATGCTCGATGGTAGGAACAGTAGGAGATCCTTCTTTATCTATTTCTTTCTATTTCTTGTCAAAATCACAGTTTTTCAAACCATAAAGAAATGAAAATAAAATAGCATTTTGAAAGTGTAGACGATAAGGGACGGTAGCAAGCGACATGCTCGCCAACGACAATAAGTAGGAATGAGGCAAAGTGTGTACATCAAGTCCGTGAGATACTCTATCTAACAAAAACACATCCGTCAAGAAAAACAGTCCCACTGACCAGATCTCAAAGTTGAGCATTCAAAATCGAAAGAAACTTATTTGCCAACCTAATATGTGATACAAACGGATTTAAAATATAAAACGGTTGGTAGACAATTCTTTTTTTTAAACGGTTAAGCTTTTTGTGGTAAGACTCGGGGATGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAATCGGTCCCTCCACCTCTTCTGGCTCGAATTCAGGAAGGCTTTCGAGGAGTCTGACATCGCGTAAATGATGTGTTTCGATGTTGTGATGGACGATGCGCTCCATGTAAGAAGCTCTGAAGTTGCATTCATCGCATTTGAGTTTACAAATCATCGGATTCTCATAGTGTCCGTCGCGGTGCTTGCGGAACTCAATGATGTTTTGATTTCTATATCCACAGTCGATGCACTGGCGCGAGACTGAAAAAAAAACGATTACTTGTTCAGATGATATAGGATTTCCCAACTTCAAAGAACCAAAACATTTTGCAGAAACTCACTTT</canonical>
            <polymorphic>TTTCGATTCTGAATTTTTGGCTTCAAAACGATCAGTCCAATGCTCGATGGTAGGAACAGTAGGAGATCCTTCTTTATCTATTTCTTTCTATTTCTTGTCAAAATCACAGTTTTTCAAACCATAAAGAAATGAAAATAAAATAGCATTTTGAAAGTGTAGACGATAAGGGACGGTAGCAAGCGACATGCTCGCCAACGACAATAAGTAGGAATGAGGCAAAGTGTGTACATCAAGTCCGTGAGATACTCTATCTAACAAAAACACATCCGTCAAGAAAAACAGTCCCACTGACCAGATCTCAAAGTTGAGCATTCAAAATCGAAAGAAACTTATTTGCCAACCTAATATGTGATACAAACGGATTTAAAATATAAAACGGTTGGTAGACAATTCTTTTTTTTAAACGGTTAAGCTTTTTGTGGTAAGACTCGGGGATGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAAMGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAATCGGTCCCTCCACCTCTTCTGGCTCGAATTCAGGAAGGCTTTCGAGGAGTCTGACATCGCGTAAATGATGTGTTTCGATGTTGTGATGGACGATGCGCTCCATGTAAGAAGCTCTGAAGTTGCATTCATCGCATTTGAGTTTACAAATCATCGGATTCTCATAGTGTCCGTCGCGGTGCTTGCGGAACTCAATGATGTTTTGATTTCTATATCCACAGTCGATGCACTGGCGCGAGACTGAAAAAAAAACGATTACTTGTTCAGATGATATAGGATTTCCCAACTTCAAAGAACCAAAACATTTTGCAGAAACTCACTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>449 434 71 46</canonical_bands>
                <polymorphic_bands>449 434 117</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAAAATGACAATGTTACATGA</pcr_primer_p1>
		<pcr_primer_p2>ATTCGTACCACTCAGAAGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAAT</canonical_amplicon>
		<polymorphic_amplicon>TGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAAMGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1928</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>773198</contig_pos>
        <strand></strand>
        <context>AATGTAACTA[A/C]AAMTAAGTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTA</left_flank>
        <right_flank>AAATAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCTATTTCTTTCTATTTCTTGTCAAAATCACAGTTTTTCAAACCATAAAGAAATGAAAATAAAATAGCATTTTGAAAGTGTAGACGATAAGGGACGGTAGCAAGCGACATGCTCGCCAACGACAATAAGTAGGAATGAGGCAAAGTGTGTACATCAAGTCCGTGAGATACTCTATCTAACAAAAACACATCCGTCAAGAAAAACAGTCCCACTGACCAGATCTCAAAGTTGAGCATTCAAAATCGAAAGAAACTTATTTGCCAACCTAATATGTGATACAAACGGATTTAAAATATAAAACGGTTGGTAGACAATTCTTTTTTTTAAACGGTTAAGCTTTTTGTGGTAAGACTCGGGGATGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAATCGGTCCCTCCACCTCTTCTGGCTCGAATTCAGGAAGGCTTTCGAGGAGTCTGACATCGCGTAAATGATGTGTTTCGATGTTGTGATGGACGATGCGCTCCATGTAAGAAGCTCTGAAGTTGCATTCATCGCATTTGAGTTTACAAATCATCGGATTCTCATAGTGTCCGTCGCGGTGCTTGCGGAACTCAATGATGTTTTGATTTCTATATCCACAGTCGATGCACTGGCGCGAGACTGAAAAAAAAACGATTACTTGTTCAGATGATATAGGATTTCCCAACTTCAAAGAACCAAAACATTTTGCAGAAACTCACTTTCACAGTCTAGCTCCTTGTCCCAATCCTTTCGTGGGCGATTAAGACCAAAATCTTTATTACCAAAAAGACCCAAT</canonical>
            <polymorphic>TATCTATTTCTTTCTATTTCTTGTCAAAATCACAGTTTTTCAAACCATAAAGAAATGAAAATAAAATAGCATTTTGAAAGTGTAGACGATAAGGGACGGTAGCAAGCGACATGCTCGCCAACGACAATAAGTAGGAATGAGGCAAAGTGTGTACATCAAGTCCGTGAGATACTCTATCTAACAAAAACACATCCGTCAAGAAAAACAGTCCCACTGACCAGATCTCAAAGTTGAGCATTCAAAATCGAAAGAAACTTATTTGCCAACCTAATATGTGATACAAACGGATTTAAAATATAAAACGGTTGGTAGACAATTCTTTTTTTTAAACGGTTAAGCTTTTTGTGGTAAGACTCGGGGATGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAMAAATAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAATCGGTCCCTCCACCTCTTCTGGCTCGAATTCAGGAAGGCTTTCGAGGAGTCTGACATCGCGTAAATGATGTGTTTCGATGTTGTGATGGACGATGCGCTCCATGTAAGAAGCTCTGAAGTTGCATTCATCGCATTTGAGTTTACAAATCATCGGATTCTCATAGTGTCCGTCGCGGTGCTTGCGGAACTCAATGATGTTTTGATTTCTATATCCACAGTCGATGCACTGGCGCGAGACTGAAAAAAAAACGATTACTTGTTCAGATGATATAGGATTTCCCAACTTCAAAGAACCAAAACATTTTGCAGAAACTCACTTTCACAGTCTAGCTCCTTGTCCCAATCCTTTCGTGGGCGATTAAGACCAAAATCTTTATTACCAAAAAGACCCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAAATGACAATGTTACATGA</pcr_primer_p1>
		<pcr_primer_p2>ATTCGTACCACTCAGAAGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAAT</canonical_amplicon>
		<polymorphic_amplicon>TGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAMAAATAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1929</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>773225</contig_pos>
        <strand></strand>
        <context>GTTTAGGGGG[A/T]WTATYAAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGG</left_flank>
        <right_flank>TTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCACAGTTTTTCAAACCATAAAGAAATGAAAATAAAATAGCATTTTGAAAGTGTAGACGATAAGGGACGGTAGCAAGCGACATGCTCGCCAACGACAATAAGTAGGAATGAGGCAAAGTGTGTACATCAAGTCCGTGAGATACTCTATCTAACAAAAACACATCCGTCAAGAAAAACAGTCCCACTGACCAGATCTCAAAGTTGAGCATTCAAAATCGAAAGAAACTTATTTGCCAACCTAATATGTGATACAAACGGATTTAAAATATAAAACGGTTGGTAGACAATTCTTTTTTTTAAACGGTTAAGCTTTTTGTGGTAAGACTCGGGGATGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAATCGGTCCCTCCACCTCTTCTGGCTCGAATTCAGGAAGGCTTTCGAGGAGTCTGACATCGCGTAAATGATGTGTTTCGATGTTGTGATGGACGATGCGCTCCATGTAAGAAGCTCTGAAGTTGCATTCATCGCATTTGAGTTTACAAATCATCGGATTCTCATAGTGTCCGTCGCGGTGCTTGCGGAACTCAATGATGTTTTGATTTCTATATCCACAGTCGATGCACTGGCGCGAGACTGAAAAAAAAACGATTACTTGTTCAGATGATATAGGATTTCCCAACTTCAAAGAACCAAAACATTTTGCAGAAACTCACTTTCACAGTCTAGCTCCTTGTCCCAATCCTTTCGTGGGCGATTAAGACCAAAATCTTTATTACCAAAAAGACCCAATCCCACATTGTAACCACGCTGCAAACGT</canonical>
            <polymorphic>AATCACAGTTTTTCAAACCATAAAGAAATGAAAATAAAATAGCATTTTGAAAGTGTAGACGATAAGGGACGGTAGCAAGCGACATGCTCGCCAACGACAATAAGTAGGAATGAGGCAAAGTGTGTACATCAAGTCCGTGAGATACTCTATCTAACAAAAACACATCCGTCAAGAAAAACAGTCCCACTGACCAGATCTCAAAGTTGAGCATTCAAAATCGAAAGAAACTTATTTGCCAACCTAATATGTGATACAAACGGATTTAAAATATAAAACGGTTGGTAGACAATTCTTTTTTTTAAACGGTTAAGCTTTTTGTGGTAAGACTCGGGGATGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGWTTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAATCGGTCCCTCCACCTCTTCTGGCTCGAATTCAGGAAGGCTTTCGAGGAGTCTGACATCGCGTAAATGATGTGTTTCGATGTTGTGATGGACGATGCGCTCCATGTAAGAAGCTCTGAAGTTGCATTCATCGCATTTGAGTTTACAAATCATCGGATTCTCATAGTGTCCGTCGCGGTGCTTGCGGAACTCAATGATGTTTTGATTTCTATATCCACAGTCGATGCACTGGCGCGAGACTGAAAAAAAAACGATTACTTGTTCAGATGATATAGGATTTCCCAACTTCAAAGAACCAAAACATTTTGCAGAAACTCACTTTCACAGTCTAGCTCCTTGTCCCAATCCTTTCGTGGGCGATTAAGACCAAAATCTTTATTACCAAAAAGACCCAATCCCACATTGTAACCACGCTGCAAACGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAAATGACAATGTTACATGA</pcr_primer_p1>
		<pcr_primer_p2>ATTCGTACCACTCAGAAGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAAT</canonical_amplicon>
		<polymorphic_amplicon>TGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGWTTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1930</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>773256</contig_pos>
        <strand></strand>
        <context>CAAAAAATGG[T/C]GAACTTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGG</left_flank>
        <right_flank>GAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAATC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATAAAATAGCATTTTGAAAGTGTAGACGATAAGGGACGGTAGCAAGCGACATGCTCGCCAACGACAATAAGTAGGAATGAGGCAAAGTGTGTACATCAAGTCCGTGAGATACTCTATCTAACAAAAACACATCCGTCAAGAAAAACAGTCCCACTGACCAGATCTCAAAGTTGAGCATTCAAAATCGAAAGAAACTTATTTGCCAACCTAATATGTGATACAAACGGATTTAAAATATAAAACGGTTGGTAGACAATTCTTTTTTTTAAACGGTTAAGCTTTTTGTGGTAAGACTCGGGGATGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAATCGGTCCCTCCACCTCTTCTGGCTCGAATTCAGGAAGGCTTTCGAGGAGTCTGACATCGCGTAAATGATGTGTTTCGATGTTGTGATGGACGATGCGCTCCATGTAAGAAGCTCTGAAGTTGCATTCATCGCATTTGAGTTTACAAATCATCGGATTCTCATAGTGTCCGTCGCGGTGCTTGCGGAACTCAATGATGTTTTGATTTCTATATCCACAGTCGATGCACTGGCGCGAGACTGAAAAAAAAACGATTACTTGTTCAGATGATATAGGATTTCCCAACTTCAAAGAACCAAAACATTTTGCAGAAACTCACTTTCACAGTCTAGCTCCTTGTCCCAATCCTTTCGTGGGCGATTAAGACCAAAATCTTTATTACCAAAAAGACCCAATCCCACATTGTAACCACGCTGCAAACGTTGGAGTGGAGTCATTGAGTCGGGATCTGGCT</canonical>
            <polymorphic>AAATAAAATAGCATTTTGAAAGTGTAGACGATAAGGGACGGTAGCAAGCGACATGCTCGCCAACGACAATAAGTAGGAATGAGGCAAAGTGTGTACATCAAGTCCGTGAGATACTCTATCTAACAAAAACACATCCGTCAAGAAAAACAGTCCCACTGACCAGATCTCAAAGTTGAGCATTCAAAATCGAAAGAAACTTATTTGCCAACCTAATATGTGATACAAACGGATTTAAAATATAAAACGGTTGGTAGACAATTCTTTTTTTTAAACGGTTAAGCTTTTTGTGGTAAGACTCGGGGATGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGGYGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAATCGGTCCCTCCACCTCTTCTGGCTCGAATTCAGGAAGGCTTTCGAGGAGTCTGACATCGCGTAAATGATGTGTTTCGATGTTGTGATGGACGATGCGCTCCATGTAAGAAGCTCTGAAGTTGCATTCATCGCATTTGAGTTTACAAATCATCGGATTCTCATAGTGTCCGTCGCGGTGCTTGCGGAACTCAATGATGTTTTGATTTCTATATCCACAGTCGATGCACTGGCGCGAGACTGAAAAAAAAACGATTACTTGTTCAGATGATATAGGATTTCCCAACTTCAAAGAACCAAAACATTTTGCAGAAACTCACTTTCACAGTCTAGCTCCTTGTCCCAATCCTTTCGTGGGCGATTAAGACCAAAATCTTTATTACCAAAAAGACCCAATCCCACATTGTAACCACGCTGCAAACGTTGGAGTGGAGTCATTGAGTCGGGATCTGGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>118 90 81 70 67 64 60 46 45 43 37 31 31 24 24 24 23 19 19 15 13 12 11 11 9 6 5 2</canonical_bands>
                <polymorphic_bands>118 90 81 70 67 64 60 52 46 45 37 31 31 24 24 24 23 19 19 15 13 12 11 11 6 5 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>311 248 188 160 67 26</canonical_bands>
                <polymorphic_bands>436 311 160 67 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAAAATGACAATGTTACATGA</pcr_primer_p1>
		<pcr_primer_p2>CGATTCGTACCACTCAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAATCG</canonical_amplicon>
		<polymorphic_amplicon>TGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGGYGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1931</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>775078</contig_pos>
        <strand>+</strand>
        <context>GACACAAGTG[A/G]CAAGTATAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGTGGAATGACGCTCGAGTGTGGTTTGCGAAACGGCTTGGACACAAGTG</left_flank>
        <right_flank>CAAGTATAGGGAAATCGGTCAAGAGTGGCTGGAGATAGTGCACACTGCGT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACGTAAGGGCACTGCGAGCAAAGAAAATGGATTTTCTTCTCATAGATCATTTTTTGTCCGTAGTTGATCATAGGTCCCACCATAAGATCCTTTCTCGCTAGCCACTTAACTGGTGGTTGAACGAGCGGGCCTATGAATCTGAAAAAAAATCAAATTGCAACTGTCAATTTTAATTCAACTTACCCAGAAGACGATCCTGGCAGCGATCCATTTGCTCCAGTATACATTGCTTGATTCTTGGTATCCTCGCCATTGGGATCATATTTCTTCCCCATGGGATGCATAGTGATGTTTCTTTTTTCGGGAGGGCAGCTGAGAAATGGACAATTTATCCATTTTCGGAAATTCTTAGATTCAAGCTTATACGTCTTATTAGATAATTGACGCTTCTCCCAGAGTTTTTTTACTTCCTTTGGAGCAAGATGGTCTGATTTTCGGTGAGACATGATGTGGAATGACGCTCGAGTGTGGTTTGCGAAACGGCTTGGACACAAGTGGCAAGTATAGGGAAATCGGTCAAGAGTGGCTGGAGATAGTGCACACTGCGTTTGATAGACGGCTTGCAGTTGTACAGGCTGTTCCGGCGCTCTACTGCGGTCTCTGTTTTGAGGTGCCAAAACTTCGAGATTCAATGGCTCTGGTTCTGGAGAATTGGGTGGATCTGGACGTGGAGATAGCTGTGGCACCGGTTCTGGAGAACCGGGTGGCTCTAGATTTAGATATTGTTGTGGCTCTAGGACTGGAGATGATTCTCGTTCTGGTTCCGGAGATAGTCGCGGCGCTGTTTCTGGAAAAGTCGGTGCATCTGAATACGAAGACTTTTGTAGATCTAGATCTGAAGAAGTCGGTAGCTTTGGGACTGGAGACAGTTGTTGCTCTGGCTCTGGATATAGTTGTGGCGGTGGTTCTGAAGAAGTCGGTGATTCTAGGATTGGAAATGATTGTCTCTCTGGCGCTCCAGATGTGGGTGGCTTTGAACTTTCATTCGAACCCGACTC</canonical>
            <polymorphic>TGACGTAAGGGCACTGCGAGCAAAGAAAATGGATTTTCTTCTCATAGATCATTTTTTGTCCGTAGTTGATCATAGGTCCCACCATAAGATCCTTTCTCGCTAGCCACTTAACTGGTGGTTGAACGAGCGGGCCTATGAATCTGAAAAAAAATCAAATTGCAACTGTCAATTTTAATTCAACTTACCCAGAAGACGATCCTGGCAGCGATCCATTTGCTCCAGTATACATTGCTTGATTCTTGGTATCCTCGCCATTGGGATCATATTTCTTCCCCATGGGATGCATAGTGATGTTTCTTTTTTCGGGAGGGCAGCTGAGAAATGGACAATTTATCCATTTTCGGAAATTCTTAGATTCAAGCTTATACGTCTTATTAGATAATTGACGCTTCTCCCAGAGTTTTTTTACTTCCTTTGGAGCAAGATGGTCTGATTTTCGGTGAGACATGATGTGGAATGACGCTCGAGTGTGGTTTGCGAAACGGCTTGGACACAAGTGRCAAGTATAGGGAAATCGGTCAAGAGTGGCTGGAGATAGTGCACACTGCGTTTGATAGACGGCTTGCAGTTGTACAGGCTGTTCCGGCGCTCTACTGCGGTCTCTGTTTTGAGGTGCCAAAACTTCGAGATTCAATGGCTCTGGTTCTGGAGAATTGGGTGGATCTGGACGTGGAGATAGCTGTGGCACCGGTTCTGGAGAACCGGGTGGCTCTAGATTTAGATATTGTTGTGGCTCTAGGACTGGAGATGATTCTCGTTCTGGTTCCGGAGATAGTCGCGGCGCTGTTTCTGGAAAAGTCGGTGCATCTGAATACGAAGACTTTTGTAGATCTAGATCTGAAGAAGTCGGTAGCTTTGGGACTGGAGACAGTTGTTGCTCTGGCTCTGGATATAGTTGTGGCGGTGGTTCTGAAGAAGTCGGTGATTCTAGGATTGGAAATGATTGTCTCTCTGGCGCTCCAGATGTGGGTGGCTTTGAACTTTCATTCGAACCCGACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTTCGGAAATTCTTAGATTC</pcr_primer_p1>
		<pcr_primer_p2>TACAACTGCAAGCCGTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>CATTTTCGGAAATTCTTAGATTCAAGCTTATACGTCTTATTAGATAATTGACGCTTCTCCCAGAGTTTTTTTACTTCCTTTGGAGCAAGATGGTCTGATTTTCGGTGAGACATGATGTGGAATGACGCTCGAGTGTGGTTTGCGAAACGGCTTGGACACAAGTGGCAAGTATAGGGAAATCGGTCAAGAGTGGCTGGAGATAGTGCACACTGCGTTTGATAGACGGCTTGCAGTTGTA</canonical_amplicon>
		<polymorphic_amplicon>CATTTTCGGAAATTCTTAGATTCAAGCTTATACGTCTTATTAGATAATTGACGCTTCTCCCAGAGTTTTTTTACTTCCTTTGGAGCAAGATGGTCTGATTTTCGGTGAGACATGATGTGGAATGACGCTCGAGTGTGGTTTGCGAAACGGCTTGGACACAAGTGRCAAGTATAGGGAAATCGGTCAAGAGTGGCTGGAGATAGTGCACACTGCGTTTGATAGACGGCTTGCAGTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1932</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>774964</contig_pos>
        <strand>+</strand>
        <context>TAGATAATTG[A/T]CGCTTCTCCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATTTTCGGAAATTCTTAGATTCAAGCTTATACGTCTTATTAGATAATTG</left_flank>
        <right_flank>CGCTTCTCCCAGAGTTTTTTTACTTCCTTTGGAGCAAGATGGTCTGATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAGACATCAGCAAAATGGTAAGAACTGTACGAGCACTGGGTGCAACTCCAGGTCCGCCTGAATTCGTGCATGTGATGGCGGAAGTGGCGCTGGAGAGACGAAATATCCGAGTTGACGTAAGGGCACTGCGAGCAAAGAAAATGGATTTTCTTCTCATAGATCATTTTTTGTCCGTAGTTGATCATAGGTCCCACCATAAGATCCTTTCTCGCTAGCCACTTAACTGGTGGTTGAACGAGCGGGCCTATGAATCTGAAAAAAAATCAAATTGCAACTGTCAATTTTAATTCAACTTACCCAGAAGACGATCCTGGCAGCGATCCATTTGCTCCAGTATACATTGCTTGATTCTTGGTATCCTCGCCATTGGGATCATATTTCTTCCCCATGGGATGCATAGTGATGTTTCTTTTTTCGGGAGGGCAGCTGAGAAATGGACAATTTATCCATTTTCGGAAATTCTTAGATTCAAGCTTATACGTCTTATTAGATAATTGACGCTTCTCCCAGAGTTTTTTTACTTCCTTTGGAGCAAGATGGTCTGATTTTCGGTGAGACATGATGTGGAATGACGCTCGAGTGTGGTTTGCGAAACGGCTTGGACACAAGTGGCAAGTATAGGGAAATCGGTCAAGAGTGGCTGGAGATAGTGCACACTGCGTTTGATAGACGGCTTGCAGTTGTACAGGCTGTTCCGGCGCTCTACTGCGGTCTCTGTTTTGAGGTGCCAAAACTTCGAGATTCAATGGCTCTGGTTCTGGAGAATTGGGTGGATCTGGACGTGGAGATAGCTGTGGCACCGGTTCTGGAGAACCGGGTGGCTCTAGATTTAGATATTGTTGTGGCTCTAGGACTGGAGATGATTCTCGTTCTGGTTCCGGAGATAGTCGCGGCGCTGTTTCTGGAAAAGTCGGTGCATCTGAATACGAAGACTTTTGTAGATCTAGATCTGAAGAAGTCGGTAGCTTTGGGACTGGAGACAGTTGTTGCTCTGGCTC</canonical>
            <polymorphic>TATAGACATCAGCAAAATGGTAAGAACTGTACGAGCACTGGGTGCAACTCCAGGTCCGCCTGAATTCGTGCATGTGATGGCGGAAGTGGCGCTGGAGAGACGAAATATCCGAGTTGACGTAAGGGCACTGCGAGCAAAGAAAATGGATTTTCTTCTCATAGATCATTTTTTGTCCGTAGTTGATCATAGGTCCCACCATAAGATCCTTTCTCGCTAGCCACTTAACTGGTGGTTGAACGAGCGGGCCTATGAATCTGAAAAAAAATCAAATTGCAACTGTCAATTTTAATTCAACTTACCCAGAAGACGATCCTGGCAGCGATCCATTTGCTCCAGTATACATTGCTTGATTCTTGGTATCCTCGCCATTGGGATCATATTTCTTCCCCATGGGATGCATAGTGATGTTTCTTTTTTCGGGAGGGCAGCTGAGAAATGGACAATTTATCCATTTTCGGAAATTCTTAGATTCAAGCTTATACGTCTTATTAGATAATTGWCGCTTCTCCCAGAGTTTTTTTACTTCCTTTGGAGCAAGATGGTCTGATTTTCGGTGAGACATGATGTGGAATGACGCTCGAGTGTGGTTTGCGAAACGGCTTGGACACAAGTGGCAAGTATAGGGAAATCGGTCAAGAGTGGCTGGAGATAGTGCACACTGCGTTTGATAGACGGCTTGCAGTTGTACAGGCTGTTCCGGCGCTCTACTGCGGTCTCTGTTTTGAGGTGCCAAAACTTCGAGATTCAATGGCTCTGGTTCTGGAGAATTGGGTGGATCTGGACGTGGAGATAGCTGTGGCACCGGTTCTGGAGAACCGGGTGGCTCTAGATTTAGATATTGTTGTGGCTCTAGGACTGGAGATGATTCTCGTTCTGGTTCCGGAGATAGTCGCGGCGCTGTTTCTGGAAAAGTCGGTGCATCTGAATACGAAGACTTTTGTAGATCTAGATCTGAAGAAGTCGGTAGCTTTGGGACTGGAGACAGTTGTTGCTCTGGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGCATAGTGATGTTTCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCTTGACCGATTTCCCTATAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GATGCATAGTGATGTTTCTTTTTTCGGGAGGGCAGCTGAGAAATGGACAATTTATCCATTTTCGGAAATTCTTAGATTCAAGCTTATACGTCTTATTAGATAATTGACGCTTCTCCCAGAGTTTTTTTACTTCCTTTGGAGCAAGATGGTCTGATTTTCGGTGAGACATGATGTGGAATGACGCTCGAGTGTGGTTTGCGAAACGGCTTGGACACAAGTGGCAAGTATAGGGAAATCGGTCAAGA</canonical_amplicon>
		<polymorphic_amplicon>GATGCATAGTGATGTTTCTTTTTTCGGGAGGGCAGCTGAGAAATGGACAATTTATCCATTTTCGGAAATTCTTAGATTCAAGCTTATACGTCTTATTAGATAATTGWCGCTTCTCCCAGAGTTTTTTTACTTCCTTTGGAGCAAGATGGTCTGATTTTCGGTGAGACATGATGTGGAATGACGCTCGAGTGTGGTTTGCGAAACGGCTTGGACACAAGTGGCAAGTATAGGGAAATCGGTCAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1933</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>774899</contig_pos>
        <strand>+</strand>
        <context>GCAGCTGAGA[A/G]ATGGACAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCCCATGGGATGCATAGTGATGTTTCTTTTTTCGGGAGGGCAGCTGAGA</left_flank>
        <right_flank>ATGGACAATTTATCCATTTTCGGAAATTCTTAGATTCAAGCTTATACGTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATGTACTAATCACGGTTACCTCTGTTTCACTTTCTGGAATATCCATGTGAAGTTTGACGTGCTTATAGACATCAGCAAAATGGTAAGAACTGTACGAGCACTGGGTGCAACTCCAGGTCCGCCTGAATTCGTGCATGTGATGGCGGAAGTGGCGCTGGAGAGACGAAATATCCGAGTTGACGTAAGGGCACTGCGAGCAAAGAAAATGGATTTTCTTCTCATAGATCATTTTTTGTCCGTAGTTGATCATAGGTCCCACCATAAGATCCTTTCTCGCTAGCCACTTAACTGGTGGTTGAACGAGCGGGCCTATGAATCTGAAAAAAAATCAAATTGCAACTGTCAATTTTAATTCAACTTACCCAGAAGACGATCCTGGCAGCGATCCATTTGCTCCAGTATACATTGCTTGATTCTTGGTATCCTCGCCATTGGGATCATATTTCTTCCCCATGGGATGCATAGTGATGTTTCTTTTTTCGGGAGGGCAGCTGAGAAATGGACAATTTATCCATTTTCGGAAATTCTTAGATTCAAGCTTATACGTCTTATTAGATAATTGACGCTTCTCCCAGAGTTTTTTTACTTCCTTTGGAGCAAGATGGTCTGATTTTCGGTGAGACATGATGTGGAATGACGCTCGAGTGTGGTTTGCGAAACGGCTTGGACACAAGTGGCAAGTATAGGGAAATCGGTCAAGAGTGGCTGGAGATAGTGCACACTGCGTTTGATAGACGGCTTGCAGTTGTACAGGCTGTTCCGGCGCTCTACTGCGGTCTCTGTTTTGAGGTGCCAAAACTTCGAGATTCAATGGCTCTGGTTCTGGAGAATTGGGTGGATCTGGACGTGGAGATAGCTGTGGCACCGGTTCTGGAGAACCGGGTGGCTCTAGATTTAGATATTGTTGTGGCTCTAGGACTGGAGATGATTCTCGTTCTGGTTCCGGAGATAGTCGCGGCGCTGTTTCTGGAAAAGTCGGTGCATCTGAATACGAAGAC</canonical>
            <polymorphic>TAATGTACTAATCACGGTTACCTCTGTTTCACTTTCTGGAATATCCATGTGAAGTTTGACGTGCTTATAGACATCAGCAAAATGGTAAGAACTGTACGAGCACTGGGTGCAACTCCAGGTCCGCCTGAATTCGTGCATGTGATGGCGGAAGTGGCGCTGGAGAGACGAAATATCCGAGTTGACGTAAGGGCACTGCGAGCAAAGAAAATGGATTTTCTTCTCATAGATCATTTTTTGTCCGTAGTTGATCATAGGTCCCACCATAAGATCCTTTCTCGCTAGCCACTTAACTGGTGGTTGAACGAGCGGGCCTATGAATCTGAAAAAAAATCAAATTGCAACTGTCAATTTTAATTCAACTTACCCAGAAGACGATCCTGGCAGCGATCCATTTGCTCCAGTATACATTGCTTGATTCTTGGTATCCTCGCCATTGGGATCATATTTCTTCCCCATGGGATGCATAGTGATGTTTCTTTTTTCGGGAGGGCAGCTGAGARATGGACAATTTATCCATTTTCGGAAATTCTTAGATTCAAGCTTATACGTCTTATTAGATAATTGACGCTTCTCCCAGAGTTTTTTTACTTCCTTTGGAGCAAGATGGTCTGATTTTCGGTGAGACATGATGTGGAATGACGCTCGAGTGTGGTTTGCGAAACGGCTTGGACACAAGTGGCAAGTATAGGGAAATCGGTCAAGAGTGGCTGGAGATAGTGCACACTGCGTTTGATAGACGGCTTGCAGTTGTACAGGCTGTTCCGGCGCTCTACTGCGGTCTCTGTTTTGAGGTGCCAAAACTTCGAGATTCAATGGCTCTGGTTCTGGAGAATTGGGTGGATCTGGACGTGGAGATAGCTGTGGCACCGGTTCTGGAGAACCGGGTGGCTCTAGATTTAGATATTGTTGTGGCTCTAGGACTGGAGATGATTCTCGTTCTGGTTCCGGAGATAGTCGCGGCGCTGTTTCTGGAAAAGTCGGTGCATCTGAATACGAAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCAGTATACATTGCTTGATTC</pcr_primer_p1>
		<pcr_primer_p2>TCATTCCACATCATGTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CTCCAGTATACATTGCTTGATTCTTGGTATCCTCGCCATTGGGATCATATTTCTTCCCCATGGGATGCATAGTGATGTTTCTTTTTTCGGGAGGGCAGCTGAGAAATGGACAATTTATCCATTTTCGGAAATTCTTAGATTCAAGCTTATACGTCTTATTAGATAATTGACGCTTCTCCCAGAGTTTTTTTACTTCCTTTGGAGCAAGATGGTCTGATTTTCGGTGAGACATGATGTGGAATGA</canonical_amplicon>
		<polymorphic_amplicon>CTCCAGTATACATTGCTTGATTCTTGGTATCCTCGCCATTGGGATCATATTTCTTCCCCATGGGATGCATAGTGATGTTTCTTTTTTCGGGAGGGCAGCTGAGARATGGACAATTTATCCATTTTCGGAAATTCTTAGATTCAAGCTTATACGTCTTATTAGATAATTGACGCTTCTCCCAGAGTTTTTTTACTTCCTTTGGAGCAAGATGGTCTGATTTTCGGTGAGACATGATGTGGAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1934</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>774821</contig_pos>
        <strand>+</strand>
        <context>TTGATTCTTG[G/T]TATCCTCGCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACGATCCTGGCAGCGATCCATTTGCTCCAGTATACATTGCTTGATTCTTG</left_flank>
        <right_flank>TATCCTCGCCATTGGGATCATATTTCTTCCCCATGGGATGCATAGTGATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTCTATAAGCATTGTCCATTTTGTTTTCGTAGTGAACCCAACGTTTGAACTGAAAAAAAGTTGTAAGGTTTTGAGATAATGTACTAATCACGGTTACCTCTGTTTCACTTTCTGGAATATCCATGTGAAGTTTGACGTGCTTATAGACATCAGCAAAATGGTAAGAACTGTACGAGCACTGGGTGCAACTCCAGGTCCGCCTGAATTCGTGCATGTGATGGCGGAAGTGGCGCTGGAGAGACGAAATATCCGAGTTGACGTAAGGGCACTGCGAGCAAAGAAAATGGATTTTCTTCTCATAGATCATTTTTTGTCCGTAGTTGATCATAGGTCCCACCATAAGATCCTTTCTCGCTAGCCACTTAACTGGTGGTTGAACGAGCGGGCCTATGAATCTGAAAAAAAATCAAATTGCAACTGTCAATTTTAATTCAACTTACCCAGAAGACGATCCTGGCAGCGATCCATTTGCTCCAGTATACATTGCTTGATTCTTGGTATCCTCGCCATTGGGATCATATTTCTTCCCCATGGGATGCATAGTGATGTTTCTTTTTTCGGGAGGGCAGCTGAGAAATGGACAATTTATCCATTTTCGGAAATTCTTAGATTCAAGCTTATACGTCTTATTAGATAATTGACGCTTCTCCCAGAGTTTTTTTACTTCCTTTGGAGCAAGATGGTCTGATTTTCGGTGAGACATGATGTGGAATGACGCTCGAGTGTGGTTTGCGAAACGGCTTGGACACAAGTGGCAAGTATAGGGAAATCGGTCAAGAGTGGCTGGAGATAGTGCACACTGCGTTTGATAGACGGCTTGCAGTTGTACAGGCTGTTCCGGCGCTCTACTGCGGTCTCTGTTTTGAGGTGCCAAAACTTCGAGATTCAATGGCTCTGGTTCTGGAGAATTGGGTGGATCTGGACGTGGAGATAGCTGTGGCACCGGTTCTGGAGAACCGGGTGGCTCTAGATTTAGATATTGTTGTGGCTCTAGGACT</canonical>
            <polymorphic>CTTTCTATAAGCATTGTCCATTTTGTTTTCGTAGTGAACCCAACGTTTGAACTGAAAAAAAGTTGTAAGGTTTTGAGATAATGTACTAATCACGGTTACCTCTGTTTCACTTTCTGGAATATCCATGTGAAGTTTGACGTGCTTATAGACATCAGCAAAATGGTAAGAACTGTACGAGCACTGGGTGCAACTCCAGGTCCGCCTGAATTCGTGCATGTGATGGCGGAAGTGGCGCTGGAGAGACGAAATATCCGAGTTGACGTAAGGGCACTGCGAGCAAAGAAAATGGATTTTCTTCTCATAGATCATTTTTTGTCCGTAGTTGATCATAGGTCCCACCATAAGATCCTTTCTCGCTAGCCACTTAACTGGTGGTTGAACGAGCGGGCCTATGAATCTGAAAAAAAATCAAATTGCAACTGTCAATTTTAATTCAACTTACCCAGAAGACGATCCTGGCAGCGATCCATTTGCTCCAGTATACATTGCTTGATTCTTGKTATCCTCGCCATTGGGATCATATTTCTTCCCCATGGGATGCATAGTGATGTTTCTTTTTTCGGGAGGGCAGCTGAGAAATGGACAATTTATCCATTTTCGGAAATTCTTAGATTCAAGCTTATACGTCTTATTAGATAATTGACGCTTCTCCCAGAGTTTTTTTACTTCCTTTGGAGCAAGATGGTCTGATTTTCGGTGAGACATGATGTGGAATGACGCTCGAGTGTGGTTTGCGAAACGGCTTGGACACAAGTGGCAAGTATAGGGAAATCGGTCAAGAGTGGCTGGAGATAGTGCACACTGCGTTTGATAGACGGCTTGCAGTTGTACAGGCTGTTCCGGCGCTCTACTGCGGTCTCTGTTTTGAGGTGCCAAAACTTCGAGATTCAATGGCTCTGGTTCTGGAGAATTGGGTGGATCTGGACGTGGAGATAGCTGTGGCACCGGTTCTGGAGAACCGGGTGGCTCTAGATTTAGATATTGTTGTGGCTCTAGGACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACTTAACTGGTGGTTGAA</pcr_primer_p1>
		<pcr_primer_p2>AAGAATTTCCGAAAATGGATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCACTTAACTGGTGGTTGAACGAGCGGGCCTATGAATCTGAAAAAAAATCAAATTGCAACTGTCAATTTTAATTCAACTTACCCAGAAGACGATCCTGGCAGCGATCCATTTGCTCCAGTATACATTGCTTGATTCTTGGTATCCTCGCCATTGGGATCATATTTCTTCCCCATGGGATGCATAGTGATGTTTCTTTTTTCGGGAGGGCAGCTGAGAAATGGACAATTTATCCATTTTCGGAAATTCTT</canonical_amplicon>
		<polymorphic_amplicon>CCACTTAACTGGTGGTTGAACGAGCGGGCCTATGAATCTGAAAAAAAATCAAATTGCAACTGTCAATTTTAATTCAACTTACCCAGAAGACGATCCTGGCAGCGATCCATTTGCTCCAGTATACATTGCTTGATTCTTGKTATCCTCGCCATTGGGATCATATTTCTTCCCCATGGGATGCATAGTGATGTTTCTTTTTTCGGGAGGGCAGCTGAGAAATGGACAATTTATCCATTTTCGGAAATTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1935</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>774756</contig_pos>
        <strand></strand>
        <context>AATTTTAATT[C/T]AACTTACCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGGCCTATGAATCTGAAAAAAAATCAAATTGCAACTGTCAATTTTAATT</left_flank>
        <right_flank>AACTTACCCAGAAGACGATCCTGGCAGCGATCCATTTGCTCCAGTATACA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACGAGTGCTCGGAGTTGACATCGGGACCGCTGGCTCTACGGTTCTGTTTTTCACTAGACTCATCTTTCTATAAGCATTGTCCATTTTGTTTTCGTAGTGAACCCAACGTTTGAACTGAAAAAAAGTTGTAAGGTTTTGAGATAATGTACTAATCACGGTTACCTCTGTTTCACTTTCTGGAATATCCATGTGAAGTTTGACGTGCTTATAGACATCAGCAAAATGGTAAGAACTGTACGAGCACTGGGTGCAACTCCAGGTCCGCCTGAATTCGTGCATGTGATGGCGGAAGTGGCGCTGGAGAGACGAAATATCCGAGTTGACGTAAGGGCACTGCGAGCAAAGAAAATGGATTTTCTTCTCATAGATCATTTTTTGTCCGTAGTTGATCATAGGTCCCACCATAAGATCCTTTCTCGCTAGCCACTTAACTGGTGGTTGAACGAGCGGGCCTATGAATCTGAAAAAAAATCAAATTGCAACTGTCAATTTTAATTCAACTTACCCAGAAGACGATCCTGGCAGCGATCCATTTGCTCCAGTATACATTGCTTGATTCTTGGTATCCTCGCCATTGGGATCATATTTCTTCCCCATGGGATGCATAGTGATGTTTCTTTTTTCGGGAGGGCAGCTGAGAAATGGACAATTTATCCATTTTCGGAAATTCTTAGATTCAAGCTTATACGTCTTATTAGATAATTGACGCTTCTCCCAGAGTTTTTTTACTTCCTTTGGAGCAAGATGGTCTGATTTTCGGTGAGACATGATGTGGAATGACGCTCGAGTGTGGTTTGCGAAACGGCTTGGACACAAGTGGCAAGTATAGGGAAATCGGTCAAGAGTGGCTGGAGATAGTGCACACTGCGTTTGATAGACGGCTTGCAGTTGTACAGGCTGTTCCGGCGCTCTACTGCGGTCTCTGTTTTGAGGTGCCAAAACTTCGAGATTCAATGGCTCTGGTTCTGGAGAATTGGGTGGATCTGGACGTGGAGATA</canonical>
            <polymorphic>TGACGAGTGCTCGGAGTTGACATCGGGACCGCTGGCTCTACGGTTCTGTTTTTCACTAGACTCATCTTTCTATAAGCATTGTCCATTTTGTTTTCGTAGTGAACCCAACGTTTGAACTGAAAAAAAGTTGTAAGGTTTTGAGATAATGTACTAATCACGGTTACCTCTGTTTCACTTTCTGGAATATCCATGTGAAGTTTGACGTGCTTATAGACATCAGCAAAATGGTAAGAACTGTACGAGCACTGGGTGCAACTCCAGGTCCGCCTGAATTCGTGCATGTGATGGCGGAAGTGGCGCTGGAGAGACGAAATATCCGAGTTGACGTAAGGGCACTGCGAGCAAAGAAAATGGATTTTCTTCTCATAGATCATTTTTTGTCCGTAGTTGATCATAGGTCCCACCATAAGATCCTTTCTCGCTAGCCACTTAACTGGTGGTTGAACGAGCGGGCCTATGAATCTGAAAAAAAATCAAATTGCAACTGTCAATTTTAATTYAACTTACCCAGAAGACGATCCTGGCAGCGATCCATTTGCTCCAGTATACATTGCTTGATTCTTGGTATCCTCGCCATTGGGATCATATTTCTTCCCCATGGGATGCATAGTGATGTTTCTTTTTTCGGGAGGGCAGCTGAGAAATGGACAATTTATCCATTTTCGGAAATTCTTAGATTCAAGCTTATACGTCTTATTAGATAATTGACGCTTCTCCCAGAGTTTTTTTACTTCCTTTGGAGCAAGATGGTCTGATTTTCGGTGAGACATGATGTGGAATGACGCTCGAGTGTGGTTTGCGAAACGGCTTGGACACAAGTGGCAAGTATAGGGAAATCGGTCAAGAGTGGCTGGAGATAGTGCACACTGCGTTTGATAGACGGCTTGCAGTTGTACAGGCTGTTCCGGCGCTCTACTGCGGTCTCTGTTTTGAGGTGCCAAAACTTCGAGATTCAATGGCTCTGGTTCTGGAGAATTGGGTGGATCTGGACGTGGAGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATATCCGAGTTGACGTAAG</pcr_primer_p1>
		<pcr_primer_p2>AGCAATGTATACTGGAGCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAATATCCGAGTTGACGTAAGGGCACTGCGAGCAAAGAAAATGGATTTTCTTCTCATAGATCATTTTTTGTCCGTAGTTGATCATAGGTCCCACCATAAGATCCTTTCTCGCTAGCCACTTAACTGGTGGTTGAACGAGCGGGCCTATGAATCTGAAAAAAAATCAAATTGCAACTGTCAATTTTAATTCAACTTACCCAGAAGACGATCCTGGCAGCGATCCATTTGCTCCAGTATACATTGCT</canonical_amplicon>
		<polymorphic_amplicon>GAAATATCCGAGTTGACGTAAGGGCACTGCGAGCAAAGAAAATGGATTTTCTTCTCATAGATCATTTTTTGTCCGTAGTTGATCATAGGTCCCACCATAAGATCCTTTCTCGCTAGCCACTTAACTGGTGGTTGAACGAGCGGGCCTATGAATCTGAAAAAAAATCAAATTGCAACTGTCAATTTTAATTYAACTTACCCAGAAGACGATCCTGGCAGCGATCCATTTGCTCCAGTATACATTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1936</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>774679</contig_pos>
        <strand>+</strand>
        <context>CCTTTCTCGC[C/T]AGCCACTTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTTTGTCCGTAGTTGATCATAGGTCCCACCATAAGATCCTTTCTCGC</left_flank>
        <right_flank>AGCCACTTAACTGGTGGTTGAACGAGCGGGCCTATGAATCTGAAAAAAAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGCACTGGATGTGGTAGATTTTCTGGTGCGGAGAACACGAGTAGATGGTTCAACCTCCATCGACCTTCCACGAAGTTGACGAGTGCTCGGAGTTGACATCGGGACCGCTGGCTCTACGGTTCTGTTTTTCACTAGACTCATCTTTCTATAAGCATTGTCCATTTTGTTTTCGTAGTGAACCCAACGTTTGAACTGAAAAAAAGTTGTAAGGTTTTGAGATAATGTACTAATCACGGTTACCTCTGTTTCACTTTCTGGAATATCCATGTGAAGTTTGACGTGCTTATAGACATCAGCAAAATGGTAAGAACTGTACGAGCACTGGGTGCAACTCCAGGTCCGCCTGAATTCGTGCATGTGATGGCGGAAGTGGCGCTGGAGAGACGAAATATCCGAGTTGACGTAAGGGCACTGCGAGCAAAGAAAATGGATTTTCTTCTCATAGATCATTTTTTGTCCGTAGTTGATCATAGGTCCCACCATAAGATCCTTTCTCGCTAGCCACTTAACTGGTGGTTGAACGAGCGGGCCTATGAATCTGAAAAAAAATCAAATTGCAACTGTCAATTTTAATTCAACTTACCCAGAAGACGATCCTGGCAGCGATCCATTTGCTCCAGTATACATTGCTTGATTCTTGGTATCCTCGCCATTGGGATCATATTTCTTCCCCATGGGATGCATAGTGATGTTTCTTTTTTCGGGAGGGCAGCTGAGAAATGGACAATTTATCCATTTTCGGAAATTCTTAGATTCAAGCTTATACGTCTTATTAGATAATTGACGCTTCTCCCAGAGTTTTTTTACTTCCTTTGGAGCAAGATGGTCTGATTTTCGGTGAGACATGATGTGGAATGACGCTCGAGTGTGGTTTGCGAAACGGCTTGGACACAAGTGGCAAGTATAGGGAAATCGGTCAAGAGTGGCTGGAGATAGTGCACACTGCGTTTGATAGACGGCTTGCAGTTGTACAGGCTGTTCCGGCGCTCTACTGCGGTC</canonical>
            <polymorphic>GTGCACTGGATGTGGTAGATTTTCTGGTGCGGAGAACACGAGTAGATGGTTCAACCTCCATCGACCTTCCACGAAGTTGACGAGTGCTCGGAGTTGACATCGGGACCGCTGGCTCTACGGTTCTGTTTTTCACTAGACTCATCTTTCTATAAGCATTGTCCATTTTGTTTTCGTAGTGAACCCAACGTTTGAACTGAAAAAAAGTTGTAAGGTTTTGAGATAATGTACTAATCACGGTTACCTCTGTTTCACTTTCTGGAATATCCATGTGAAGTTTGACGTGCTTATAGACATCAGCAAAATGGTAAGAACTGTACGAGCACTGGGTGCAACTCCAGGTCCGCCTGAATTCGTGCATGTGATGGCGGAAGTGGCGCTGGAGAGACGAAATATCCGAGTTGACGTAAGGGCACTGCGAGCAAAGAAAATGGATTTTCTTCTCATAGATCATTTTTTGTCCGTAGTTGATCATAGGTCCCACCATAAGATCCTTTCTCGCYAGCCACTTAACTGGTGGTTGAACGAGCGGGCCTATGAATCTGAAAAAAAATCAAATTGCAACTGTCAATTTTAATTCAACTTACCCAGAAGACGATCCTGGCAGCGATCCATTTGCTCCAGTATACATTGCTTGATTCTTGGTATCCTCGCCATTGGGATCATATTTCTTCCCCATGGGATGCATAGTGATGTTTCTTTTTTCGGGAGGGCAGCTGAGAAATGGACAATTTATCCATTTTCGGAAATTCTTAGATTCAAGCTTATACGTCTTATTAGATAATTGACGCTTCTCCCAGAGTTTTTTTACTTCCTTTGGAGCAAGATGGTCTGATTTTCGGTGAGACATGATGTGGAATGACGCTCGAGTGTGGTTTGCGAAACGGCTTGGACACAAGTGGCAAGTATAGGGAAATCGGTCAAGAGTGGCTGGAGATAGTGCACACTGCGTTTGATAGACGGCTTGCAGTTGTACAGGCTGTTCCGGCGCTCTACTGCGGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCTAGC</site>
                <isoschizomers>
                    <enzyme>AsuNHI</enzyme>
                    <enzyme>BmtI</enzyme>
                    <enzyme>NheI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 366 133</canonical_bands>
                <polymorphic_bands>867 133</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATATCCGAGTTGACGTAAG</pcr_primer_p1>
		<pcr_primer_p2>AGCAATGTATACTGGAGCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAATATCCGAGTTGACGTAAGGGCACTGCGAGCAAAGAAAATGGATTTTCTTCTCATAGATCATTTTTTGTCCGTAGTTGATCATAGGTCCCACCATAAGATCCTTTCTCGCTAGCCACTTAACTGGTGGTTGAACGAGCGGGCCTATGAATCTGAAAAAAAATCAAATTGCAACTGTCAATTTTAATTCAACTTACCCAGAAGACGATCCTGGCAGCGATCCATTTGCTCCAGTATACATTGCT</canonical_amplicon>
		<polymorphic_amplicon>GAAATATCCGAGTTGACGTAAGGGCACTGCGAGCAAAGAAAATGGATTTTCTTCTCATAGATCATTTTTTGTCCGTAGTTGATCATAGGTCCCACCATAAGATCCTTTCTCGCYAGCCACTTAACTGGTGGTTGAACGAGCGGGCCTATGAATCTGAAAAAAAATCAAATTGCAACTGTCAATTTTAATTCAACTTACCCAGAAGACGATCCTGGCAGCGATCCATTTGCTCCAGTATACATTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1937</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>774631</contig_pos>
        <strand>+</strand>
        <context>CATAGATCAT[C/T]TTTTGTCCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGTAAGGGCACTGCGAGCAAAGAAAATGGATTTTCTTCTCATAGATCAT</left_flank>
        <right_flank>TTTTGTCCGTAGTTGATCATAGGTCCCACCATAAGATCCTTTCTCGCTAG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGATGCTTCCTTCTTGCTCGAATCGGTTGCTCTCCGTTTTGCTGGTGGTGCACTGGATGTGGTAGATTTTCTGGTGCGGAGAACACGAGTAGATGGTTCAACCTCCATCGACCTTCCACGAAGTTGACGAGTGCTCGGAGTTGACATCGGGACCGCTGGCTCTACGGTTCTGTTTTTCACTAGACTCATCTTTCTATAAGCATTGTCCATTTTGTTTTCGTAGTGAACCCAACGTTTGAACTGAAAAAAAGTTGTAAGGTTTTGAGATAATGTACTAATCACGGTTACCTCTGTTTCACTTTCTGGAATATCCATGTGAAGTTTGACGTGCTTATAGACATCAGCAAAATGGTAAGAACTGTACGAGCACTGGGTGCAACTCCAGGTCCGCCTGAATTCGTGCATGTGATGGCGGAAGTGGCGCTGGAGAGACGAAATATCCGAGTTGACGTAAGGGCACTGCGAGCAAAGAAAATGGATTTTCTTCTCATAGATCATTTTTTGTCCGTAGTTGATCATAGGTCCCACCATAAGATCCTTTCTCGCTAGCCACTTAACTGGTGGTTGAACGAGCGGGCCTATGAATCTGAAAAAAAATCAAATTGCAACTGTCAATTTTAATTCAACTTACCCAGAAGACGATCCTGGCAGCGATCCATTTGCTCCAGTATACATTGCTTGATTCTTGGTATCCTCGCCATTGGGATCATATTTCTTCCCCATGGGATGCATAGTGATGTTTCTTTTTTCGGGAGGGCAGCTGAGAAATGGACAATTTATCCATTTTCGGAAATTCTTAGATTCAAGCTTATACGTCTTATTAGATAATTGACGCTTCTCCCAGAGTTTTTTTACTTCCTTTGGAGCAAGATGGTCTGATTTTCGGTGAGACATGATGTGGAATGACGCTCGAGTGTGGTTTGCGAAACGGCTTGGACACAAGTGGCAAGTATAGGGAAATCGGTCAAGAGTGGCTGGAGATAGTGCACACTGCGTTTG</canonical>
            <polymorphic>CCGATGCTTCCTTCTTGCTCGAATCGGTTGCTCTCCGTTTTGCTGGTGGTGCACTGGATGTGGTAGATTTTCTGGTGCGGAGAACACGAGTAGATGGTTCAACCTCCATCGACCTTCCACGAAGTTGACGAGTGCTCGGAGTTGACATCGGGACCGCTGGCTCTACGGTTCTGTTTTTCACTAGACTCATCTTTCTATAAGCATTGTCCATTTTGTTTTCGTAGTGAACCCAACGTTTGAACTGAAAAAAAGTTGTAAGGTTTTGAGATAATGTACTAATCACGGTTACCTCTGTTTCACTTTCTGGAATATCCATGTGAAGTTTGACGTGCTTATAGACATCAGCAAAATGGTAAGAACTGTACGAGCACTGGGTGCAACTCCAGGTCCGCCTGAATTCGTGCATGTGATGGCGGAAGTGGCGCTGGAGAGACGAAATATCCGAGTTGACGTAAGGGCACTGCGAGCAAAGAAAATGGATTTTCTTCTCATAGATCATYTTTTGTCCGTAGTTGATCATAGGTCCCACCATAAGATCCTTTCTCGCTAGCCACTTAACTGGTGGTTGAACGAGCGGGCCTATGAATCTGAAAAAAAATCAAATTGCAACTGTCAATTTTAATTCAACTTACCCAGAAGACGATCCTGGCAGCGATCCATTTGCTCCAGTATACATTGCTTGATTCTTGGTATCCTCGCCATTGGGATCATATTTCTTCCCCATGGGATGCATAGTGATGTTTCTTTTTTCGGGAGGGCAGCTGAGAAATGGACAATTTATCCATTTTCGGAAATTCTTAGATTCAAGCTTATACGTCTTATTAGATAATTGACGCTTCTCCCAGAGTTTTTTTACTTCCTTTGGAGCAAGATGGTCTGATTTTCGGTGAGACATGATGTGGAATGACGCTCGAGTGTGGTTTGCGAAACGGCTTGGACACAAGTGGCAAGTATAGGGAAATCGGTCAAGAGTGGCTGGAGATAGTGCACACTGCGTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATATCCGAGTTGACGTAAG</pcr_primer_p1>
		<pcr_primer_p2>AGCAATGTATACTGGAGCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAATATCCGAGTTGACGTAAGGGCACTGCGAGCAAAGAAAATGGATTTTCTTCTCATAGATCATTTTTTGTCCGTAGTTGATCATAGGTCCCACCATAAGATCCTTTCTCGCTAGCCACTTAACTGGTGGTTGAACGAGCGGGCCTATGAATCTGAAAAAAAATCAAATTGCAACTGTCAATTTTAATTCAACTTACCCAGAAGACGATCCTGGCAGCGATCCATTTGCTCCAGTATACATTGCT</canonical_amplicon>
		<polymorphic_amplicon>GAAATATCCGAGTTGACGTAAGGGCACTGCGAGCAAAGAAAATGGATTTTCTTCTCATAGATCATYTTTTGTCCGTAGTTGATCATAGGTCCCACCATAAGATCCTTTCTCGCTAGCCACTTAACTGGTGGTTGAACGAGCGGGCCTATGAATCTGAAAAAAAATCAAATTGCAACTGTCAATTTTAATTCAACTTACCCAGAAGACGATCCTGGCAGCGATCCATTTGCTCCAGTATACATTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1938</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>867060</contig_pos>
        <strand>+</strand>
        <context>CAGAAACATC[A/G]AATATCAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTGCTGAGCCAATACCGGTTGAGCTATGCAGTATCGAACAGAAACATC</left_flank>
        <right_flank>AATATCAAAAAAAAATTATTCCTCTTTTTCTGCGGAGGAGTTCTGCTCAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACAGGATTCGAAGTTCACTACATTTTATTGAATACGTTGAAATTAGATATTTTTTCCTGGTTCAGTATATAACACTTAGTTAACAAGTAAGAAACAACTCTGGAAACTTTTGAAATATACGTGTGTCCACATTCGATATATTTGCTCTTATTTTTTATTTCTGCAAAAGTTTGAAATTTTAAGAATTGCTCCCAACTTTGAAAACCCCGTCCGTTGATGTAGTGGTCTTTCTGTTGTTTTCGTTAGTCCCGAACAACTTCAAATTAGTTTTTTTTCTAGTTTTCTGTTTCAATGCTCAAAAAACTGAAAAGAAATTTCTAGTTGCCCAATGAGTGTTTTCAATCTTTCAGAGAGTTTTTATATAGGATGTGTTACCTAAAACTGGAGGAACACCGAAAAATTGTTCTCTAAGTTTGTAAATCGCAGCCACGCAAAAATCCAACGCCGGAAGTGCTGAGCCAATACCGGTTGAGCTATGCAGTATCGAACAGAAACATCAAATATCAAAAAAAAATTATTCCTCTTTTTCTGCGGAGGAGTTCTGCTCATGTTGAACAACTTTGAATACTTCGCATCAAAACATTTGCTCTTAGCAAAAAAAAAACTAGGGAATCCGTTATACTTCATCTCCAAATTGATTCCATGTGTTCTGAAACAATATGTATTTGTGAACCTCAGCATCTTATCTTCTCGCTAATCCCTTCCTTCAAAAAATCACAAAAAATTGAGTCGTACATCCCCTCGTTTCCTCCATCTATCCATTTTCCATTGTCCATATCTTCCCTAATCCGTGCATTCTAGAAATTCTCATTTTTCTTCCTTAACCGGCATTTGTGTACTCGTGTCCGGCACGGTGCTGGTTTGGGTACTGCTCGTGGTCTTTTTTATTTCTTGATCCTATCCGTTTAATAAACAAATATATAAATATCTGAATGCATTTGGACAAAGAACATGCTTTCATTCATATTTATTGAAATTTCCGTAGCCTCAAGCAAAAAA</canonical>
            <polymorphic>CACAGGATTCGAAGTTCACTACATTTTATTGAATACGTTGAAATTAGATATTTTTTCCTGGTTCAGTATATAACACTTAGTTAACAAGTAAGAAACAACTCTGGAAACTTTTGAAATATACGTGTGTCCACATTCGATATATTTGCTCTTATTTTTTATTTCTGCAAAAGTTTGAAATTTTAAGAATTGCTCCCAACTTTGAAAACCCCGTCCGTTGATGTAGTGGTCTTTCTGTTGTTTTCGTTAGTCCCGAACAACTTCAAATTAGTTTTTTTTCTAGTTTTCTGTTTCAATGCTCAAAAAACTGAAAAGAAATTTCTAGTTGCCCAATGAGTGTTTTCAATCTTTCAGAGAGTTTTTATATAGGATGTGTTACCTAAAACTGGAGGAACACCGAAAAATTGTTCTCTAAGTTTGTAAATCGCAGCCACGCAAAAATCCAACGCCGGAAGTGCTGAGCCAATACCGGTTGAGCTATGCAGTATCGAACAGAAACATCRAATATCAAAAAAAAATTATTCCTCTTTTTCTGCGGAGGAGTTCTGCTCATGTTGAACAACTTTGAATACTTCGCATCAAAACATTTGCTCTTAGCAAAAAAAAAACTAGGGAATCCGTTATACTTCATCTCCAAATTGATTCCATGTGTTCTGAAACAATATGTATTTGTGAACCTCAGCATCTTATCTTCTCGCTAATCCCTTCCTTCAAAAAATCACAAAAAATTGAGTCGTACATCCCCTCGTTTCCTCCATCTATCCATTTTCCATTGTCCATATCTTCCCTAATCCGTGCATTCTAGAAATTCTCATTTTTCTTCCTTAACCGGCATTTGTGTACTCGTGTCCGGCACGGTGCTGGTTTGGGTACTGCTCGTGGTCTTTTTTATTTCTTGATCCTATCCGTTTAATAAACAAATATATAAATATCTGAATGCATTTGGACAAAGAACATGCTTTCATTCATATTTATTGAAATTTCCGTAGCCTCAAGCAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAGTGTTTTCAATCTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>ATGCGAAGTATTCAAAGTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATGAGTGTTTTCAATCTTTCAGAGAGTTTTTATATAGGATGTGTTACCTAAAACTGGAGGAACACCGAAAAATTGTTCTCTAAGTTTGTAAATCGCAGCCACGCAAAAATCCAACGCCGGAAGTGCTGAGCCAATACCGGTTGAGCTATGCAGTATCGAACAGAAACATCAAATATCAAAAAAAAATTATTCCTCTTTTTCTGCGGAGGAGTTCTGCTCATGTTGAACAACTTTGAATACTTCGCAT</canonical_amplicon>
		<polymorphic_amplicon>AATGAGTGTTTTCAATCTTTCAGAGAGTTTTTATATAGGATGTGTTACCTAAAACTGGAGGAACACCGAAAAATTGTTCTCTAAGTTTGTAAATCGCAGCCACGCAAAAATCCAACGCCGGAAGTGCTGAGCCAATACCGGTTGAGCTATGCAGTATCGAACAGAAACATCRAATATCAAAAAAAAATTATTCCTCTTTTTCTGCGGAGGAGTTCTGCTCATGTTGAACAACTTTGAATACTTCGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1940</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>868857</contig_pos>
        <strand>+</strand>
        <context>ACCATCTCGA[C/T]YTGATCAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTGTAGACATTATGACAACGATTCCGGGGTCAATGCTAACCATCTCGA</left_flank>
        <right_flank>CTGATCAAAAATGATGAAAATCTTACTTTAAAATATGTATTTTTCCTTCT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTACTGTGTGTGACGTGACGTCGGATGAACACTCCGGAAACCGGTGACGTGTGAGACAGTGGGCATGTATCCATTGCCATTCACCCAACTCTTCTTCTCCTTTTTGTTCTTCTTCGGCACTCGGGATGAGTAAAGAAGGCTTGAAGGAGAAGGAGAAGAAGAAAACTTTGATCTTACACGTCTTTTAATATACATTTTCTAGTACCTCACAAGTTCTCATCACTTTTCCTTTTTTTTTCTTCACTAGTACTACTATGAAAAATTCGGTCTAGTGTTTTTATTCGGAGAGACCATTTTGATCAGGAGGAAGTTCTGAATTTTCGAAAAGTTTCTTCGAGGATCGTGAGTTTATGCTACAACATTGCCCTAACTATCAAAAATATAAATGTTTCTGACCGATTTTTTTTTGATTATTGTAATAGGTATCAAAAATAGATAATTGATGAAATATTGTAGACATTATGACAACGATTCCGGGGTCAATGCTAACCATCTCGATCTGATCAAAAATGATGAAAATCTTACTTTAAAATATGTATTTTTCCTTCTCTTGTGCAATTTAGCCGTAACATCACTGTAATGTCGATAAGAATTGAAATATATATTTTTAGTAAATAAAAAATCCAAATTTCTTTAAAATTCAAATTGATTAGCCTCTTCCAAAATCTGCTTTCCAAAAATCAATTATCAAATTCAACTTTTCAAAATCTGAAAGTTTCTTCGGAATTCAATTTTTAAGAATACTGAATTTTTTTGTTAAACCTTCTTTTCCCAGAAAAACTATTTTGATCCGAAAATAGTTTTAGTTCGAAATAATCAGCTAGATCCATTTTATCTTTTTATCTCAACCCTCTTGACAATTTTCATGAAATTCTTCAAAACATTTCAGATGACTTTTCTGGAACTTTTCAATTACAATACATATTTTGTTCCTTTTGAAACAAATTTTCGAACTTTACTCAGTTTCCAGATAATGCATTTTCCATGTCATTCAATCTC</canonical>
            <polymorphic>CTTACTGTGTGTGACGTGACGTCGGATGAACACTCCGGAAACCGGTGACGTGTGAGACAGTGGGCATGTATCCATTGCCATTCACCCAACTCTTCTTCTCCTTTTTGTTCTTCTTCGGCACTCGGGATGAGTAAAGAAGGCTTGAAGGAGAAGGAGAAGAAGAAAACTTTGATCTTACACGTCTTTTAATATACATTTTCTAGTACCTCACAAGTTCTCATCACTTTTCCTTTTTTTTTCTTCACTAGTACTACTATGAAAAATTCGGTCTAGTGTTTTTATTCGGAGAGACCATTTTGATCAGGAGGAAGTTCTGAATTTTCGAAAAGTTTCTTCGAGGATCGTGAGTTTATGCTACAACATTGCCCTAACTATCAAAAATATAAATGTTTCTGACCGATTTTTTTTTGATTATTGTAATAGGTATCAAAAATAGATAATTGATGAAATATTGTAGACATTATGACAACGATTCCGGGGTCAATGCTAACCATCTCGAYCTGATCAAAAATGATGAAAATCTTACTTTAAAATATGTATTTTTCCTTCTCTTGTGCAATTTAGCCGTAACATCACTGTAATGTCGATAAGAATTGAAATATATATTTTTAGTAAATAAAAAATCCAAATTTCTTTAAAATTCAAATTGATTAGCCTCTTCCAAAATCTGCTTTCCAAAAATCAATTATCAAATTCAACTTTTCAAAATCTGAAAGTTTCTTCGGAATTCAATTTTTAAGAATACTGAATTTTTTTGTTAAACCTTCTTTTCCCAGAAAAACTATTTTGATCCGAAAATAGTTTTAGTTCGAAATAATCAGCTAGATCCATTTTATCTTTTTATCTCAACCCTCTTGACAATTTTCATGAAATTCTTCAAAACATTTCAGATGACTTTTCTGGAACTTTTCAATTACAATACATATTTTGTTCCTTTTGAAACAAATTTTCGAACTTTACTCAGTTTCCAGATAATGCATTTTCCATGTCATTCAATCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>286 176 170 158 128 41 36 5</canonical_bands>
                <polymorphic_bands>286 176 170 163 128 41 36</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>261 209 111 108 96 79 69 30 24 13</canonical_bands>
                <polymorphic_bands>317 261 111 96 79 69 30 24 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGATCGTGAGTTTATGCTAC</pcr_primer_p1>
		<pcr_primer_p2>ATTACAGTGATGTTACGGCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAGGATCGTGAGTTTATGCTACAACATTGCCCTAACTATCAAAAATATAAATGTTTCTGACCGATTTTTTTTTGATTATTGTAATAGGTATCAAAAATAGATAATTGATGAAATATTGTAGACATTATGACAACGATTCCGGGGTCAATGCTAACCATCTCGATCTGATCAAAAATGATGAAAATCTTACTTTAAAATATGTATTTTTCCTTCTCTTGTGCAATTTAGCCGTAACATCACTGTAAT</canonical_amplicon>
		<polymorphic_amplicon>GAGGATCGTGAGTTTATGCTACAACATTGCCCTAACTATCAAAAATATAAATGTTTCTGACCGATTTTTTTTTGATTATTGTAATAGGTATCAAAAATAGATAATTGATGAAATATTGTAGACATTATGACAACGATTCCGGGGTCAATGCTAACCATCTCGAYCTGATCAAAAATGATGAAAATCTTACTTTAAAATATGTATTTTTCCTTCTCTTGTGCAATTTAGCCGTAACATCACTGTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1966</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>872604</contig_pos>
        <strand>+</strand>
        <context>CTAAAATATT[C/T]GCTTTTCAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATATTGAGTGGGTGGAATATATGCTTTTTCCTATGAAAAACTAAAATATT</left_flank>
        <right_flank>GCTTTTCAACTATTGTCAAATTGCGGAAGAATGAAGCGGCATGTCTTTTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCATAGTGGACGTATACTGTGTGGTTTCTGTTATAGAACTTACGGCAGTACAATAGATCTATCCTTTGAAATTTAGTGCATTGGAAATTCTAATTTTATTTTTCGCTATTGCAGACTTTTACCAGAAAATTTTTTATTTATCTAATTATCTAAAAATTGTCTTGTTTTCCCACTGGTCTGGTCTGCTGGCCCAATGGTCCATATCCCCAATTAGTCAATATCCACACGCCTTTTTATTAAATTATATTCTCCTTCCTTTTTCAGAAGACACGAACGTGAATGTATAATTACAAACATGGCATTTTTATAAGCTTGTATGTCTTTATTTTAGTGCTTCAGCCAATATATGTTCGATGTGTACTGTTGCTTGGAGACTGAACCCTATTAATTGGTCTGGATTGTCCTAAAAGCCTCCGTGCTTTTCTTCAAAATCAAAAAGCAAATATAAATATTGAGTGGGTGGAATATATGCTTTTTCCTATGAAAAACTAAAATATTCGCTTTTCAACTATTGTCAAATTGCGGAAGAATGAAGCGGCATGTCTTTTCAGATGATGTTATGTGTTTGTTATATGAGTGTTGATACTCGAGTTCTTTCCATTCCCCCCACGGGACCAATTCAACAGGCTTCTCTCCATAGTTTCTTTTTTTTAGTGCCTTTTCGCTTTCTCGAAAAAACCCACAATCGTCGTTCTCAATTGGTCTCCTCAAACCCTTGTCACTTTTTTCCCCTAAGAAACAAGGAAGAGAATTGGGACCATTCGGATTATGTGGGAATAGATGTGATACAAAGAGACATCAATCACTCCCCATTTCTTGCCAGAGGGTAATTATTGTCTCAAGTTTGTTGGGGTTGGGTTAGAGAGAAACTAGAATTGAGCCTATTTTCGCTATTCTCCAGATTTTTTAAACCAGACAAGGGAAATGACTTCGCCCTTTCCGTTACTTAACCCAACGAACTTTTGTTCTTGTTTTCTTGCAACAACTCCCAAATAAACG</canonical>
            <polymorphic>CTCATAGTGGACGTATACTGTGTGGTTTCTGTTATAGAACTTACGGCAGTACAATAGATCTATCCTTTGAAATTTAGTGCATTGGAAATTCTAATTTTATTTTTCGCTATTGCAGACTTTTACCAGAAAATTTTTTATTTATCTAATTATCTAAAAATTGTCTTGTTTTCCCACTGGTCTGGTCTGCTGGCCCAATGGTCCATATCCCCAATTAGTCAATATCCACACGCCTTTTTATTAAATTATATTCTCCTTCCTTTTTCAGAAGACACGAACGTGAATGTATAATTACAAACATGGCATTTTTATAAGCTTGTATGTCTTTATTTTAGTGCTTCAGCCAATATATGTTCGATGTGTACTGTTGCTTGGAGACTGAACCCTATTAATTGGTCTGGATTGTCCTAAAAGCCTCCGTGCTTTTCTTCAAAATCAAAAAGCAAATATAAATATTGAGTGGGTGGAATATATGCTTTTTCCTATGAAAAACTAAAATATTYGCTTTTCAACTATTGTCAAATTGCGGAAGAATGAAGCGGCATGTCTTTTCAGATGATGTTATGTGTTTGTTATATGAGTGTTGATACTCGAGTTCTTTCCATTCCCCCCACGGGACCAATTCAACAGGCTTCTCTCCATAGTTTCTTTTTTTTAGTGCCTTTTCGCTTTCTCGAAAAAACCCACAATCGTCGTTCTCAATTGGTCTCCTCAAACCCTTGTCACTTTTTTCCCCTAAGAAACAAGGAAGAGAATTGGGACCATTCGGATTATGTGGGAATAGATGTGATACAAAGAGACATCAATCACTCCCCATTTCTTGCCAGAGGGTAATTATTGTCTCAAGTTTGTTGGGGTTGGGTTAGAGAGAAACTAGAATTGAGCCTATTTTCGCTATTCTCCAGATTTTTTAAACCAGACAAGGGAAATGACTTCGCCCTTTCCGTTACTTAACCCAACGAACTTTTGTTCTTGTTTTCTTGCAACAACTCCCAAATAAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTGTACTGTTGCTTGGAGA</pcr_primer_p1>
		<pcr_primer_p2>TGGAAAGAACTCGAGTATCAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATGTGTACTGTTGCTTGGAGACTGAACCCTATTAATTGGTCTGGATTGTCCTAAAAGCCTCCGTGCTTTTCTTCAAAATCAAAAAGCAAATATAAATATTGAGTGGGTGGAATATATGCTTTTTCCTATGAAAAACTAAAATATTCGCTTTTCAACTATTGTCAAATTGCGGAAGAATGAAGCGGCATGTCTTTTCAGATGATGTTATGTGTTTGTTATATGAGTGTTGATACTCGAGTTCTTTCCA</canonical_amplicon>
		<polymorphic_amplicon>ATGTGTACTGTTGCTTGGAGACTGAACCCTATTAATTGGTCTGGATTGTCCTAAAAGCCTCCGTGCTTTTCTTCAAAATCAAAAAGCAAATATAAATATTGAGTGGGTGGAATATATGCTTTTTCCTATGAAAAACTAAAATATTYGCTTTTCAACTATTGTCAAATTGCGGAAGAATGAAGCGGCATGTCTTTTCAGATGATGTTATGTGTTTGTTATATGAGTGTTGATACTCGAGTTCTTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1967</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>872451</contig_pos>
        <strand>+</strand>
        <context>TCARCCAATA[G/T]ATGTTCGATG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGGCATTTTTATAAGCTTGTATGTCTTTATTTTAGTGCTTCAGCCAATA</left_flank>
        <right_flank>ATGTTCGATGTGTACTGTTGCTTGGAGACTGAACCCTATTAATTGGTCTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTAATTGTCATACCATTTTGAGTTCAATTATCTTGTATCCTTTGATATACATCAAAAATCTGTCAATTGATCTAATATTAATGATATTATGACGAATAATTTGACTATTGAAAATTGTTCGATATCTTCTGAAGGAACCGATATTACTGAGCTCATAGTGGACGTATACTGTGTGGTTTCTGTTATAGAACTTACGGCAGTACAATAGATCTATCCTTTGAAATTTAGTGCATTGGAAATTCTAATTTTATTTTTCGCTATTGCAGACTTTTACCAGAAAATTTTTTATTTATCTAATTATCTAAAAATTGTCTTGTTTTCCCACTGGTCTGGTCTGCTGGCCCAATGGTCCATATCCCCAATTAGTCAATATCCACACGCCTTTTTATTAAATTATATTCTCCTTCCTTTTTCAGAAGACACGAACGTGAATGTATAATTACAAACATGGCATTTTTATAAGCTTGTATGTCTTTATTTTAGTGCTTCAGCCAATATATGTTCGATGTGTACTGTTGCTTGGAGACTGAACCCTATTAATTGGTCTGGATTGTCCTAAAAGCCTCCGTGCTTTTCTTCAAAATCAAAAAGCAAATATAAATATTGAGTGGGTGGAATATATGCTTTTTCCTATGAAAAACTAAAATATTCGCTTTTCAACTATTGTCAAATTGCGGAAGAATGAAGCGGCATGTCTTTTCAGATGATGTTATGTGTTTGTTATATGAGTGTTGATACTCGAGTTCTTTCCATTCCCCCCACGGGACCAATTCAACAGGCTTCTCTCCATAGTTTCTTTTTTTTAGTGCCTTTTCGCTTTCTCGAAAAAACCCACAATCGTCGTTCTCAATTGGTCTCCTCAAACCCTTGTCACTTTTTTCCCCTAAGAAACAAGGAAGAGAATTGGGACCATTCGGATTATGTGGGAATAGATGTGATACAAAGAGACATCAATCACTCCCCATTTCTTGCCAGAGGGTAATTATTGTCTCAAGTTT</canonical>
            <polymorphic>CTCTAATTGTCATACCATTTTGAGTTCAATTATCTTGTATCCTTTGATATACATCAAAAATCTGTCAATTGATCTAATATTAATGATATTATGACGAATAATTTGACTATTGAAAATTGTTCGATATCTTCTGAAGGAACCGATATTACTGAGCTCATAGTGGACGTATACTGTGTGGTTTCTGTTATAGAACTTACGGCAGTACAATAGATCTATCCTTTGAAATTTAGTGCATTGGAAATTCTAATTTTATTTTTCGCTATTGCAGACTTTTACCAGAAAATTTTTTATTTATCTAATTATCTAAAAATTGTCTTGTTTTCCCACTGGTCTGGTCTGCTGGCCCAATGGTCCATATCCCCAATTAGTCAATATCCACACGCCTTTTTATTAAATTATATTCTCCTTCCTTTTTCAGAAGACACGAACGTGAATGTATAATTACAAACATGGCATTTTTATAAGCTTGTATGTCTTTATTTTAGTGCTTCAGCCAATAKATGTTCGATGTGTACTGTTGCTTGGAGACTGAACCCTATTAATTGGTCTGGATTGTCCTAAAAGCCTCCGTGCTTTTCTTCAAAATCAAAAAGCAAATATAAATATTGAGTGGGTGGAATATATGCTTTTTCCTATGAAAAACTAAAATATTCGCTTTTCAACTATTGTCAAATTGCGGAAGAATGAAGCGGCATGTCTTTTCAGATGATGTTATGTGTTTGTTATATGAGTGTTGATACTCGAGTTCTTTCCATTCCCCCCACGGGACCAATTCAACAGGCTTCTCTCCATAGTTTCTTTTTTTTAGTGCCTTTTCGCTTTCTCGAAAAAACCCACAATCGTCGTTCTCAATTGGTCTCCTCAAACCCTTGTCACTTTTTTCCCCTAAGAAACAAGGAAGAGAATTGGGACCATTCGGATTATGTGGGAATAGATGTGATACAAAGAGACATCAATCACTCCCCATTTCTTGCCAGAGGGTAATTATTGTCTCAAGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCATATCCCCAATTAGTCA</pcr_primer_p1>
		<pcr_primer_p2>ATATTTGCTTTTTGATTTTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCATATCCCCAATTAGTCAATATCCACACGCCTTTTTATTAAATTATATTCTCCTTCCTTTTTCAGAAGACACGAACGTGAATGTATAATTACAAACATGGCATTTTTATAAGCTTGTATGTCTTTATTTTAGTGCTTCAGCCAATATATGTTCGATGTGTACTGTTGCTTGGAGACTGAACCCTATTAATTGGTCTGGATTGTCCTAAAAGCCTCCGTGCTTTTCTTCAAAATCAAAAAGCAAATAT</canonical_amplicon>
		<polymorphic_amplicon>TCCATATCCCCAATTAGTCAATATCCACACGCCTTTTTATTAAATTATATTCTCCTTCCTTTTTCAGAAGACACGAACGTGAATGTATAATTACAAACATGGCATTTTTATAAGCTTGTATGTCTTTATTTTAGTGCTTCAGCCAATAKATGTTCGATGTGTACTGTTGCTTGGAGACTGAACCCTATTAATTGGTCTGGATTGTCCTAAAAGCCTCCGTGCTTTTCTTCAAAATCAAAAAGCAAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1968</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>872444</contig_pos>
        <strand>+</strand>
        <context>TAGTGCTTCA[A/G]CCAATAKATG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACAAACATGGCATTTTTATAAGCTTGTATGTCTTTATTTTAGTGCTTCA</left_flank>
        <right_flank>CCAATATATGTTCGATGTGTACTGTTGCTTGGAGACTGAACCCTATTAAT</right_flank>
        <qual_score>145</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTATTCTCTAATTGTCATACCATTTTGAGTTCAATTATCTTGTATCCTTTGATATACATCAAAAATCTGTCAATTGATCTAATATTAATGATATTATGACGAATAATTTGACTATTGAAAATTGTTCGATATCTTCTGAAGGAACCGATATTACTGAGCTCATAGTGGACGTATACTGTGTGGTTTCTGTTATAGAACTTACGGCAGTACAATAGATCTATCCTTTGAAATTTAGTGCATTGGAAATTCTAATTTTATTTTTCGCTATTGCAGACTTTTACCAGAAAATTTTTTATTTATCTAATTATCTAAAAATTGTCTTGTTTTCCCACTGGTCTGGTCTGCTGGCCCAATGGTCCATATCCCCAATTAGTCAATATCCACACGCCTTTTTATTAAATTATATTCTCCTTCCTTTTTCAGAAGACACGAACGTGAATGTATAATTACAAACATGGCATTTTTATAAGCTTGTATGTCTTTATTTTAGTGCTTCAGCCAATATATGTTCGATGTGTACTGTTGCTTGGAGACTGAACCCTATTAATTGGTCTGGATTGTCCTAAAAGCCTCCGTGCTTTTCTTCAAAATCAAAAAGCAAATATAAATATTGAGTGGGTGGAATATATGCTTTTTCCTATGAAAAACTAAAATATTCGCTTTTCAACTATTGTCAAATTGCGGAAGAATGAAGCGGCATGTCTTTTCAGATGATGTTATGTGTTTGTTATATGAGTGTTGATACTCGAGTTCTTTCCATTCCCCCCACGGGACCAATTCAACAGGCTTCTCTCCATAGTTTCTTTTTTTTAGTGCCTTTTCGCTTTCTCGAAAAAACCCACAATCGTCGTTCTCAATTGGTCTCCTCAAACCCTTGTCACTTTTTTCCCCTAAGAAACAAGGAAGAGAATTGGGACCATTCGGATTATGTGGGAATAGATGTGATACAAAGAGACATCAATCACTCCCCATTTCTTGCCAGAGGGTAATTATTGTCT</canonical>
            <polymorphic>GTTTATTCTCTAATTGTCATACCATTTTGAGTTCAATTATCTTGTATCCTTTGATATACATCAAAAATCTGTCAATTGATCTAATATTAATGATATTATGACGAATAATTTGACTATTGAAAATTGTTCGATATCTTCTGAAGGAACCGATATTACTGAGCTCATAGTGGACGTATACTGTGTGGTTTCTGTTATAGAACTTACGGCAGTACAATAGATCTATCCTTTGAAATTTAGTGCATTGGAAATTCTAATTTTATTTTTCGCTATTGCAGACTTTTACCAGAAAATTTTTTATTTATCTAATTATCTAAAAATTGTCTTGTTTTCCCACTGGTCTGGTCTGCTGGCCCAATGGTCCATATCCCCAATTAGTCAATATCCACACGCCTTTTTATTAAATTATATTCTCCTTCCTTTTTCAGAAGACACGAACGTGAATGTATAATTACAAACATGGCATTTTTATAAGCTTGTATGTCTTTATTTTAGTGCTTCARCCAATATATGTTCGATGTGTACTGTTGCTTGGAGACTGAACCCTATTAATTGGTCTGGATTGTCCTAAAAGCCTCCGTGCTTTTCTTCAAAATCAAAAAGCAAATATAAATATTGAGTGGGTGGAATATATGCTTTTTCCTATGAAAAACTAAAATATTCGCTTTTCAACTATTGTCAAATTGCGGAAGAATGAAGCGGCATGTCTTTTCAGATGATGTTATGTGTTTGTTATATGAGTGTTGATACTCGAGTTCTTTCCATTCCCCCCACGGGACCAATTCAACAGGCTTCTCTCCATAGTTTCTTTTTTTTAGTGCCTTTTCGCTTTCTCGAAAAAACCCACAATCGTCGTTCTCAATTGGTCTCCTCAAACCCTTGTCACTTTTTTCCCCTAAGAAACAAGGAAGAGAATTGGGACCATTCGGATTATGTGGGAATAGATGTGATACAAAGAGACATCAATCACTCCCCATTTCTTGCCAGAGGGTAATTATTGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>217 212 190 160 122 71 28</canonical_bands>
                <polymorphic_bands>217 212 190 160 122 99</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCATATCCCCAATTAGTCA</pcr_primer_p1>
		<pcr_primer_p2>ATATTTGCTTTTTGATTTTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCATATCCCCAATTAGTCAATATCCACACGCCTTTTTATTAAATTATATTCTCCTTCCTTTTTCAGAAGACACGAACGTGAATGTATAATTACAAACATGGCATTTTTATAAGCTTGTATGTCTTTATTTTAGTGCTTCAGCCAATATATGTTCGATGTGTACTGTTGCTTGGAGACTGAACCCTATTAATTGGTCTGGATTGTCCTAAAAGCCTCCGTGCTTTTCTTCAAAATCAAAAAGCAAATAT</canonical_amplicon>
		<polymorphic_amplicon>TCCATATCCCCAATTAGTCAATATCCACACGCCTTTTTATTAAATTATATTCTCCTTCCTTTTTCAGAAGACACGAACGTGAATGTATAATTACAAACATGGCATTTTTATAAGCTTGTATGTCTTTATTTTAGTGCTTCARCCAATATATGTTCGATGTGTACTGTTGCTTGGAGACTGAACCCTATTAATTGGTCTGGATTGTCCTAAAAGCCTCCGTGCTTTTCTTCAAAATCAAAAAGCAAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1969</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>872422</contig_pos>
        <strand>+</strand>
        <context>ATAAGCTTGT[A/C]TGTCTTTATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GACACGAACGTGAATGTATAATTACAAACATGGCATTTTTATAAGCTTGT</left_flank>
        <right_flank>TGTCTTTATTTTAGTGCTTCAGCCAATATATGTTCGATGTGTACTGTTGC</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGATTTTTTCCGGTTTTCAGAGTTTATTCTCTAATTGTCATACCATTTTGAGTTCAATTATCTTGTATCCTTTGATATACATCAAAAATCTGTCAATTGATCTAATATTAATGATATTATGACGAATAATTTGACTATTGAAAATTGTTCGATATCTTCTGAAGGAACCGATATTACTGAGCTCATAGTGGACGTATACTGTGTGGTTTCTGTTATAGAACTTACGGCAGTACAATAGATCTATCCTTTGAAATTTAGTGCATTGGAAATTCTAATTTTATTTTTCGCTATTGCAGACTTTTACCAGAAAATTTTTTATTTATCTAATTATCTAAAAATTGTCTTGTTTTCCCACTGGTCTGGTCTGCTGGCCCAATGGTCCATATCCCCAATTAGTCAATATCCACACGCCTTTTTATTAAATTATATTCTCCTTCCTTTTTCAGAAGACACGAACGTGAATGTATAATTACAAACATGGCATTTTTATAAGCTTGTATGTCTTTATTTTAGTGCTTCAGCCAATATATGTTCGATGTGTACTGTTGCTTGGAGACTGAACCCTATTAATTGGTCTGGATTGTCCTAAAAGCCTCCGTGCTTTTCTTCAAAATCAAAAAGCAAATATAAATATTGAGTGGGTGGAATATATGCTTTTTCCTATGAAAAACTAAAATATTCGCTTTTCAACTATTGTCAAATTGCGGAAGAATGAAGCGGCATGTCTTTTCAGATGATGTTATGTGTTTGTTATATGAGTGTTGATACTCGAGTTCTTTCCATTCCCCCCACGGGACCAATTCAACAGGCTTCTCTCCATAGTTTCTTTTTTTTAGTGCCTTTTCGCTTTCTCGAAAAAACCCACAATCGTCGTTCTCAATTGGTCTCCTCAAACCCTTGTCACTTTTTTCCCCTAAGAAACAAGGAAGAGAATTGGGACCATTCGGATTATGTGGGAATAGATGTGATACAAAGAGACATCAATCACTCCCCATTTCT</canonical>
            <polymorphic>TTGATTTTTTCCGGTTTTCAGAGTTTATTCTCTAATTGTCATACCATTTTGAGTTCAATTATCTTGTATCCTTTGATATACATCAAAAATCTGTCAATTGATCTAATATTAATGATATTATGACGAATAATTTGACTATTGAAAATTGTTCGATATCTTCTGAAGGAACCGATATTACTGAGCTCATAGTGGACGTATACTGTGTGGTTTCTGTTATAGAACTTACGGCAGTACAATAGATCTATCCTTTGAAATTTAGTGCATTGGAAATTCTAATTTTATTTTTCGCTATTGCAGACTTTTACCAGAAAATTTTTTATTTATCTAATTATCTAAAAATTGTCTTGTTTTCCCACTGGTCTGGTCTGCTGGCCCAATGGTCCATATCCCCAATTAGTCAATATCCACACGCCTTTTTATTAAATTATATTCTCCTTCCTTTTTCAGAAGACACGAACGTGAATGTATAATTACAAACATGGCATTTTTATAAGCTTGTMTGTCTTTATTTTAGTGCTTCAGCCAATATATGTTCGATGTGTACTGTTGCTTGGAGACTGAACCCTATTAATTGGTCTGGATTGTCCTAAAAGCCTCCGTGCTTTTCTTCAAAATCAAAAAGCAAATATAAATATTGAGTGGGTGGAATATATGCTTTTTCCTATGAAAAACTAAAATATTCGCTTTTCAACTATTGTCAAATTGCGGAAGAATGAAGCGGCATGTCTTTTCAGATGATGTTATGTGTTTGTTATATGAGTGTTGATACTCGAGTTCTTTCCATTCCCCCCACGGGACCAATTCAACAGGCTTCTCTCCATAGTTTCTTTTTTTTAGTGCCTTTTCGCTTTCTCGAAAAAACCCACAATCGTCGTTCTCAATTGGTCTCCTCAAACCCTTGTCACTTTTTTCCCCTAAGAAACAAGGAAGAGAATTGGGACCATTCGGATTATGTGGGAATAGATGTGATACAAAGAGACATCAATCACTCCCCATTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCATATCCCCAATTAGTCA</pcr_primer_p1>
		<pcr_primer_p2>ATATTTGCTTTTTGATTTTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCATATCCCCAATTAGTCAATATCCACACGCCTTTTTATTAAATTATATTCTCCTTCCTTTTTCAGAAGACACGAACGTGAATGTATAATTACAAACATGGCATTTTTATAAGCTTGTATGTCTTTATTTTAGTGCTTCAGCCAATATATGTTCGATGTGTACTGTTGCTTGGAGACTGAACCCTATTAATTGGTCTGGATTGTCCTAAAAGCCTCCGTGCTTTTCTTCAAAATCAAAAAGCAAATAT</canonical_amplicon>
		<polymorphic_amplicon>TCCATATCCCCAATTAGTCAATATCCACACGCCTTTTTATTAAATTATATTCTCCTTCCTTTTTCAGAAGACACGAACGTGAATGTATAATTACAAACATGGCATTTTTATAAGCTTGTMTGTCTTTATTTTAGTGCTTCAGCCAATATATGTTCGATGTGTACTGTTGCTTGGAGACTGAACCCTATTAATTGGTCTGGATTGTCCTAAAAGCCTCCGTGCTTTTCTTCAAAATCAAAAAGCAAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1970</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>872324</contig_pos>
        <strand>+</strand>
        <context>AATTAGTCAA[C/T]ATCCACACGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCACTGGTCTGGTCTGCTGGCCCAATGGTCCATATCCCCAATTAGTCAA</left_flank>
        <right_flank>ATCCACACGCCTTTTTATTAAATTATATTCTCCTTCCTTTTTCAGAAGAC</right_flank>
        <qual_score>145</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGCTCCGTTGGTACGTTAGCGCATTAAAACAAGTTGTTTTCAAATTTGAAATGTCTTTATCAACTTCACTCCATTTTATAACTCAAAATCCGATTTTTTGATTTTTTCCGGTTTTCAGAGTTTATTCTCTAATTGTCATACCATTTTGAGTTCAATTATCTTGTATCCTTTGATATACATCAAAAATCTGTCAATTGATCTAATATTAATGATATTATGACGAATAATTTGACTATTGAAAATTGTTCGATATCTTCTGAAGGAACCGATATTACTGAGCTCATAGTGGACGTATACTGTGTGGTTTCTGTTATAGAACTTACGGCAGTACAATAGATCTATCCTTTGAAATTTAGTGCATTGGAAATTCTAATTTTATTTTTCGCTATTGCAGACTTTTACCAGAAAATTTTTTATTTATCTAATTATCTAAAAATTGTCTTGTTTTCCCACTGGTCTGGTCTGCTGGCCCAATGGTCCATATCCCCAATTAGTCAATATCCACACGCCTTTTTATTAAATTATATTCTCCTTCCTTTTTCAGAAGACACGAACGTGAATGTATAATTACAAACATGGCATTTTTATAAGCTTGTATGTCTTTATTTTAGTGCTTCAGCCAATATATGTTCGATGTGTACTGTTGCTTGGAGACTGAACCCTATTAATTGGTCTGGATTGTCCTAAAAGCCTCCGTGCTTTTCTTCAAAATCAAAAAGCAAATATAAATATTGAGTGGGTGGAATATATGCTTTTTCCTATGAAAAACTAAAATATTCGCTTTTCAACTATTGTCAAATTGCGGAAGAATGAAGCGGCATGTCTTTTCAGATGATGTTATGTGTTTGTTATATGAGTGTTGATACTCGAGTTCTTTCCATTCCCCCCACGGGACCAATTCAACAGGCTTCTCTCCATAGTTTCTTTTTTTTAGTGCCTTTTCGCTTTCTCGAAAAAACCCACAATCGTCGTTCTCAATTGGTCTCCTCAAACCCTTGT</canonical>
            <polymorphic>GGGCTCCGTTGGTACGTTAGCGCATTAAAACAAGTTGTTTTCAAATTTGAAATGTCTTTATCAACTTCACTCCATTTTATAACTCAAAATCCGATTTTTTGATTTTTTCCGGTTTTCAGAGTTTATTCTCTAATTGTCATACCATTTTGAGTTCAATTATCTTGTATCCTTTGATATACATCAAAAATCTGTCAATTGATCTAATATTAATGATATTATGACGAATAATTTGACTATTGAAAATTGTTCGATATCTTCTGAAGGAACCGATATTACTGAGCTCATAGTGGACGTATACTGTGTGGTTTCTGTTATAGAACTTACGGCAGTACAATAGATCTATCCTTTGAAATTTAGTGCATTGGAAATTCTAATTTTATTTTTCGCTATTGCAGACTTTTACCAGAAAATTTTTTATTTATCTAATTATCTAAAAATTGTCTTGTTTTCCCACTGGTCTGGTCTGCTGGCCCAATGGTCCATATCCCCAATTAGTCAAYATCCACACGCCTTTTTATTAAATTATATTCTCCTTCCTTTTTCAGAAGACACGAACGTGAATGTATAATTACAAACATGGCATTTTTATAAGCTTGTATGTCTTTATTTTAGTGCTTCAGCCAATATATGTTCGATGTGTACTGTTGCTTGGAGACTGAACCCTATTAATTGGTCTGGATTGTCCTAAAAGCCTCCGTGCTTTTCTTCAAAATCAAAAAGCAAATATAAATATTGAGTGGGTGGAATATATGCTTTTTCCTATGAAAAACTAAAATATTCGCTTTTCAACTATTGTCAAATTGCGGAAGAATGAAGCGGCATGTCTTTTCAGATGATGTTATGTGTTTGTTATATGAGTGTTGATACTCGAGTTCTTTCCATTCCCCCCACGGGACCAATTCAACAGGCTTCTCTCCATAGTTTCTTTTTTTTAGTGCCTTTTCGCTTTCTCGAAAAAACCCACAATCGTCGTTCTCAATTGGTCTCCTCAAACCCTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAACTTACGGCAGTACAATAGA</pcr_primer_p1>
		<pcr_primer_p2>TATACATTCACGTTCGTGTCTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGAACTTACGGCAGTACAATAGATCTATCCTTTGAAATTTAGTGCATTGGAAATTCTAATTTTATTTTTCGCTATTGCAGACTTTTACCAGAAAATTTTTTATTTATCTAATTATCTAAAAATTGTCTTGTTTTCCCACTGGTCTGGTCTGCTGGCCCAATGGTCCATATCCCCAATTAGTCAATATCCACACGCCTTTTTATTAAATTATATTCTCCTTCCTTTTTCAGAAGACACGAACGTGAATGTATA</canonical_amplicon>
		<polymorphic_amplicon>AGAACTTACGGCAGTACAATAGATCTATCCTTTGAAATTTAGTGCATTGGAAATTCTAATTTTATTTTTCGCTATTGCAGACTTTTACCAGAAAATTTTTTATTTATCTAATTATCTAAAAATTGTCTTGTTTTCCCACTGGTCTGGTCTGCTGGCCCAATGGTCCATATCCCCAATTAGTCAAYATCCACACGCCTTTTTATTAAATTATATTCTCCTTCCTTTTTCAGAAGACACGAACGTGAATGTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1976</snp_id>
        <super_contig>c000700911.Contig1</super_contig>
        <contig_pos>72786</contig_pos>
        <strand>+</strand>
        <context>AGGAATATCT[G/T]AGCAATCAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCGGAAACTGGAGCATTGCTCAGCGAGTTACTGTCAAAACAGGAATATCT</left_flank>
        <right_flank>AGCAATCAACACGAGAAGGCCGCTGCCAGGAGCATACCATTGGCAGAAGC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTGTCAAAAATGCGGTTCTCCTGATGCTCCAGAATTCGAGAATTAAAATGAACCCCAAAAAGTTGTATCAGGTGCGGAAATCTGGATTTTCGGACACACAGACAGATTTTTAGGCCGACGGACATGCGGTACAGGAGCTGCTGCCAGCGCTGAAAATCCTATTTTCAGCCAAATCCGAAGAAATGGATTCTGGACCAAAATGGAACCAAATTAAGAATAAATTGTCTTCAAAGGTCTGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAATTTAGAATTTTTGAATTTTTTTTTCAAAATTTCCAGATGCAAGAGGTGCGTATCACTCGTCAACTATCCAATCAGCTACCGGAAACTGGAGCATTGCTCAGCGAGTTACTGTCAAAACAGGAATATCTTAGCAATCAACACGAGAAGGCCGCTGCCAGGAGCATACCATTGGCAGAAGCCGAGAAATTGCTAAATGCGACGATTCAGGGCATTGCTCAGGATGCTGAGCAATTGGCTGTAGGGTTTTTTTTGGATTTTTCAGAAAATTTAGAACATTTTCTCAGTTGGAATTTTTGTTCTAGCTCTTCTGGGAGCTGAGATACACTTTATAGCACAAGAGAGCACTGTGAATTGCGAGAGCGCAGAGAAATCTAGCTTCTCTGTGTCTCTCACACCTCCCCACTGTCTGGCAAATCTCTAAAAGTTCAGCAAACAGAGAAAAAAAAAACGAATCTGGAGGTATGGGGAATCGAACCCCAGACTTCTCGCATGCAAAGCGAGCGCTCTACCCCTGAGCTATACCCCCCACCCTCTTCTTCGAAGTGAATGGCGGTTATAAAAGGGAGGAAAATGGGAGATTTAGGAAGTGTCGTAACTTTGGAAGGAGAAGAGATGCTGAAAAATTTTCA</canonical>
            <polymorphic>AATTTGTCAAAAATGCGGTTCTCCTGATGCTCCAGAATTCGAGAATTAAAATGAACCCCAAAAAGTTGTATCAGGTGCGGAAATCTGGATTTTCGGACACACAGACAGATTTTTAGGCCGACGGACATGCGGTACAGGAGCTGCTGCCAGCGCTGAAAATCCTATTTTCAGCCAAATCCGAAGAAATGGATTCTGGACCAAAATGGAACCAAATTAAGAATAAATTGTCTTCAAAGGTCTGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAATTTAGAATTTTTGAATTTTTTTTTCAAAATTTCCAGATGCAAGAGGTGCGTATCACTCGTCAACTATCCAATCAGCTACCGGAAACTGGAGCATTGCTCAGCGAGTTACTGTCAAAACAGGAATATCTKAGCAATCAACACGAGAAGGCCGCTGCCAGGAGCATACCATTGGCAGAAGCCGAGAAATTGCTAAATGCGACGATTCAGGGCATTGCTCAGGATGCTGAGCAATTGGCTGTAGGGTTTTTTTTGGATTTTTCAGAAAATTTAGAACATTTTCTCAGTTGGAATTTTTGTTCTAGCTCTTCTGGGAGCTGAGATACACTTTATAGCACAAGAGAGCACTGTGAATTGCGAGAGCGCAGAGAAATCTAGCTTCTCTGTGTCTCTCACACCTCCCCACTGTCTGGCAAATCTCTAAAAGTTCAGCAAACAGAGAAAAAAAAAACGAATCTGGAGGTATGGGGAATCGAACCCCAGACTTCTCGCATGCAAAGCGAGCGCTCTACCCCTGAGCTATACCCCCCACCCTCTTCTTCGAAGTGAATGGCGGTTATAAAAGGGAGGAAAATGGGAGATTTAGGAAGTGTCGTAACTTTGGAAGGAGAAGAGATGCTGAAAAATTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCACTCGTCAACTATCCAATC</pcr_primer_p1>
		<pcr_primer_p2>TAGAACAAAAATTCCAACTGAGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATCACTCGTCAACTATCCAATCAGCTACCGGAAACTGGAGCATTGCTCAGCGAGTTACTGTCAAAACAGGAATATCTTAGCAATCAACACGAGAAGGCCGCTGCCAGGAGCATACCATTGGCAGAAGCCGAGAAATTGCTAAATGCGACGATTCAGGGCATTGCTCAGGATGCTGAGCAATTGGCTGTAGGGTTTTTTTTGGATTTTTCAGAAAATTTAGAACATTTTCTCAGTTGGAATTTTTGTTCTA</canonical_amplicon>
		<polymorphic_amplicon>TATCACTCGTCAACTATCCAATCAGCTACCGGAAACTGGAGCATTGCTCAGCGAGTTACTGTCAAAACAGGAATATCTKAGCAATCAACACGAGAAGGCCGCTGCCAGGAGCATACCATTGGCAGAAGCCGAGAAATTGCTAAATGCGACGATTCAGGGCATTGCTCAGGATGCTGAGCAATTGGCTGTAGGGTTTTTTTTGGATTTTTCAGAAAATTTAGAACATTTTCTCAGTTGGAATTTTTGTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1977</snp_id>
        <super_contig>c000700911.Contig1</super_contig>
        <contig_pos>72922</contig_pos>
        <strand></strand>
        <context>TTTTTCAGAA[A/C]ATTTAGAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTCAGGATGCTGAGCAATTGGCTGTAGGGTTTTTTTTGGATTTTTCAGAA</left_flank>
        <right_flank>ATTTAGAACATTTTCTCAGTTGGAATTTTTGTTCTAGCTCTTCTGGGAGC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGCTGCTGCCAGCGCTGAAAATCCTATTTTCAGCCAAATCCGAAGAAATGGATTCTGGACCAAAATGGAACCAAATTAAGAATAAATTGTCTTCAAAGGTCTGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAATTTAGAATTTTTGAATTTTTTTTTCAAAATTTCCAGATGCAAGAGGTGCGTATCACTCGTCAACTATCCAATCAGCTACCGGAAACTGGAGCATTGCTCAGCGAGTTACTGTCAAAACAGGAATATCTTAGCAATCAACACGAGAAGGCCGCTGCCAGGAGCATACCATTGGCAGAAGCCGAGAAATTGCTAAATGCGACGATTCAGGGCATTGCTCAGGATGCTGAGCAATTGGCTGTAGGGTTTTTTTTGGATTTTTCAGAAAATTTAGAACATTTTCTCAGTTGGAATTTTTGTTCTAGCTCTTCTGGGAGCTGAGATACACTTTATAGCACAAGAGAGCACTGTGAATTGCGAGAGCGCAGAGAAATCTAGCTTCTCTGTGTCTCTCACACCTCCCCACTGTCTGGCAAATCTCTAAAAGTTCAGCAAACAGAGAAAAAAAAAACGAATCTGGAGGTATGGGGAATCGAACCCCAGACTTCTCGCATGCAAAGCGAGCGCTCTACCCCTGAGCTATACCCCCCACCCTCTTCTTCGAAGTGAATGGCGGTTATAAAAGGGAGGAAAATGGGAGATTTAGGAAGTGTCGTAACTTTGGAAGGAGAAGAGATGCTGAAAAATTTTCAACTAATGAATTGTTGGAAATTTTATGCTGAGCAATTTTGTAGTTGACCACTTTTTTGTAGGTGACTTGGTTTTTGAGATATAAACGCTGGAAGTTGGGGTGTCCCTTGGCCTTTTTTCAGCAAAAAACTCTCCGCT</canonical>
            <polymorphic>GGAGCTGCTGCCAGCGCTGAAAATCCTATTTTCAGCCAAATCCGAAGAAATGGATTCTGGACCAAAATGGAACCAAATTAAGAATAAATTGTCTTCAAAGGTCTGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAATTTAGAATTTTTGAATTTTTTTTTCAAAATTTCCAGATGCAAGAGGTGCGTATCACTCGTCAACTATCCAATCAGCTACCGGAAACTGGAGCATTGCTCAGCGAGTTACTGTCAAAACAGGAATATCTTAGCAATCAACACGAGAAGGCCGCTGCCAGGAGCATACCATTGGCAGAAGCCGAGAAATTGCTAAATGCGACGATTCAGGGCATTGCTCAGGATGCTGAGCAATTGGCTGTAGGGTTTTTTTTGGATTTTTCAGAAMATTTAGAACATTTTCTCAGTTGGAATTTTTGTTCTAGCTCTTCTGGGAGCTGAGATACACTTTATAGCACAAGAGAGCACTGTGAATTGCGAGAGCGCAGAGAAATCTAGCTTCTCTGTGTCTCTCACACCTCCCCACTGTCTGGCAAATCTCTAAAAGTTCAGCAAACAGAGAAAAAAAAAACGAATCTGGAGGTATGGGGAATCGAACCCCAGACTTCTCGCATGCAAAGCGAGCGCTCTACCCCTGAGCTATACCCCCCACCCTCTTCTTCGAAGTGAATGGCGGTTATAAAAGGGAGGAAAATGGGAGATTTAGGAAGTGTCGTAACTTTGGAAGGAGAAGAGATGCTGAAAAATTTTCAACTAATGAATTGTTGGAAATTTTATGCTGAGCAATTTTGTAGTTGACCACTTTTTTGTAGGTGACTTGGTTTTTGAGATATAAACGCTGGAAGTTGGGGTGTCCCTTGGCCTTTTTTCAGCAAAAAACTCTCCGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>333 237 119 105 25 24 14 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>333 261 119 105 25 14 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>272 157 104 75 61 45 35 24 19 15 15 14 11 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>272 157 104 75 61 59 45 19 15 15 14 11 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAGCGAGTTACTGTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGTGCTCTCTTGTGCTATAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCAGCGAGTTACTGTCAAAACAGGAATATCTTAGCAATCAACACGAGAAGGCCGCTGCCAGGAGCATACCATTGGCAGAAGCCGAGAAATTGCTAAATGCGACGATTCAGGGCATTGCTCAGGATGCTGAGCAATTGGCTGTAGGGTTTTTTTTGGATTTTTCAGAAAATTTAGAACATTTTCTCAGTTGGAATTTTTGTTCTAGCTCTTCTGGGAGCTGAGATACACTTTATAGCACAAGAGAGCACT</canonical_amplicon>
		<polymorphic_amplicon>CTCAGCGAGTTACTGTCAAAACAGGAATATCTTAGCAATCAACACGAGAAGGCCGCTGCCAGGAGCATACCATTGGCAGAAGCCGAGAAATTGCTAAATGCGACGATTCAGGGCATTGCTCAGGATGCTGAGCAATTGGCTGTAGGGTTTTTTTTGGATTTTTCAGAAMATTTAGAACATTTTCTCAGTTGGAATTTTTGTTCTAGCTCTTCTGGGAGCTGAGATACACTTTATAGCACAAGAGAGCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1978</snp_id>
        <super_contig>c000700911.Contig1</super_contig>
        <contig_pos>73096</contig_pos>
        <strand>+</strand>
        <context>GCAAACAGAG[A/G]AAAAAAAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCACACCTCCCCACTGTCTGGCAAATCTCTAAAAGTTCAGCAAACAGAG</left_flank>
        <right_flank>AAAAAAAAACGAATCTGGAGGTATGGGGAATCGAACCCCAGACTTCTCGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAATTTAGAATTTTTGAATTTTTTTTTCAAAATTTCCAGATGCAAGAGGTGCGTATCACTCGTCAACTATCCAATCAGCTACCGGAAACTGGAGCATTGCTCAGCGAGTTACTGTCAAAACAGGAATATCTTAGCAATCAACACGAGAAGGCCGCTGCCAGGAGCATACCATTGGCAGAAGCCGAGAAATTGCTAAATGCGACGATTCAGGGCATTGCTCAGGATGCTGAGCAATTGGCTGTAGGGTTTTTTTTGGATTTTTCAGAAAATTTAGAACATTTTCTCAGTTGGAATTTTTGTTCTAGCTCTTCTGGGAGCTGAGATACACTTTATAGCACAAGAGAGCACTGTGAATTGCGAGAGCGCAGAGAAATCTAGCTTCTCTGTGTCTCTCACACCTCCCCACTGTCTGGCAAATCTCTAAAAGTTCAGCAAACAGAGAAAAAAAAAACGAATCTGGAGGTATGGGGAATCGAACCCCAGACTTCTCGCATGCAAAGCGAGCGCTCTACCCCTGAGCTATACCCCCCACCCTCTTCTTCGAAGTGAATGGCGGTTATAAAAGGGAGGAAAATGGGAGATTTAGGAAGTGTCGTAACTTTGGAAGGAGAAGAGATGCTGAAAAATTTTCAACTAATGAATTGTTGGAAATTTTATGCTGAGCAATTTTGTAGTTGACCACTTTTTTGTAGGTGACTTGGTTTTTGAGATATAAACGCTGGAAGTTGGGGTGTCCCTTGGCCTTTTTTCAGCAAAAAACTCTCCGCTGGAAGTTGGGGTGTCCAAGGGCCGTTTATGAAAGAGAATTGGGAAACATAGGTTTTACATCAGGAAATTTGGTTTTGTGAAATTTATAAAACCGATTCCGGAGATTAGGTTAAAAAACTAGAAAGATAGTAGTTTTTCAAAAATTCAAAAATGTGAGAAAATTCCGACAAAATA</canonical>
            <polymorphic>TAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAATTTAGAATTTTTGAATTTTTTTTTCAAAATTTCCAGATGCAAGAGGTGCGTATCACTCGTCAACTATCCAATCAGCTACCGGAAACTGGAGCATTGCTCAGCGAGTTACTGTCAAAACAGGAATATCTTAGCAATCAACACGAGAAGGCCGCTGCCAGGAGCATACCATTGGCAGAAGCCGAGAAATTGCTAAATGCGACGATTCAGGGCATTGCTCAGGATGCTGAGCAATTGGCTGTAGGGTTTTTTTTGGATTTTTCAGAAAATTTAGAACATTTTCTCAGTTGGAATTTTTGTTCTAGCTCTTCTGGGAGCTGAGATACACTTTATAGCACAAGAGAGCACTGTGAATTGCGAGAGCGCAGAGAAATCTAGCTTCTCTGTGTCTCTCACACCTCCCCACTGTCTGGCAAATCTCTAAAAGTTCAGCAAACAGAGRAAAAAAAAACGAATCTGGAGGTATGGGGAATCGAACCCCAGACTTCTCGCATGCAAAGCGAGCGCTCTACCCCTGAGCTATACCCCCCACCCTCTTCTTCGAAGTGAATGGCGGTTATAAAAGGGAGGAAAATGGGAGATTTAGGAAGTGTCGTAACTTTGGAAGGAGAAGAGATGCTGAAAAATTTTCAACTAATGAATTGTTGGAAATTTTATGCTGAGCAATTTTGTAGTTGACCACTTTTTTGTAGGTGACTTGGTTTTTGAGATATAAACGCTGGAAGTTGGGGTGTCCCTTGGCCTTTTTTCAGCAAAAAACTCTCCGCTGGAAGTTGGGGTGTCCAAGGGCCGTTTATGAAAGAGAATTGGGAAACATAGGTTTTACATCAGGAAATTTGGTTTTGTGAAATTTATAAAACCGATTCCGGAGATTAGGTTAAAAAACTAGAAAGATAGTAGTTTTTCAAAAATTCAAAAATGTGAGAAAATTCCGACAAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAATCTAGCTTCTCTGTGTCT</pcr_primer_p1>
		<pcr_primer_p2>ATCTCTTCTCCTTCCAAAGTTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGAAATCTAGCTTCTCTGTGTCTCTCACACCTCCCCACTGTCTGGCAAATCTCTAAAAGTTCAGCAAACAGAGAAAAAAAAAACGAATCTGGAGGTATGGGGAATCGAACCCCAGACTTCTCGCATGCAAAGCGAGCGCTCTACCCCTGAGCTATACCCCCCACCCTCTTCTTCGAAGTGAATGGCGGTTATAAAAGGGAGGAAAATGGGAGATTTAGGAAGTGTCGTAACTTTGGAAGGAGAAGAGAT</canonical_amplicon>
		<polymorphic_amplicon>GAGAAATCTAGCTTCTCTGTGTCTCTCACACCTCCCCACTGTCTGGCAAATCTCTAAAAGTTCAGCAAACAGAGRAAAAAAAAACGAATCTGGAGGTATGGGGAATCGAACCCCAGACTTCTCGCATGCAAAGCGAGCGCTCTACCCCTGAGCTATACCCCCCACCCTCTTCTTCGAAGTGAATGGCGGTTATAAAAGGGAGGAAAATGGGAGATTTAGGAAGTGTCGTAACTTTGGAAGGAGAAGAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1979</snp_id>
        <super_contig>c000700929.Contig1</super_contig>
        <contig_pos>121912</contig_pos>
        <strand>+</strand>
        <context>CCCAATAACC[C/G]TGTGTTTGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGGTCAGTTGTTCTCAGCCGGCATATATAACTTTTTTCTACCCAATAACC</left_flank>
        <right_flank>TGTGTTTGGAGCATACTCTAAAAAAGACGGGCCGGGTCAGAGAAGTTACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACGTCATTCAGGATCTAGTTCGACCCCACGGGGATAGGAGGTTGAGATAGTGATAACAAGTAGATAATAAATTCAATTTTACAGAGAAAGATTTTGCCACCAGAAACAATGCTTTGAGCCGGTCGATGTATATTCAGTGTCCAACGAAAACAACAAGAAATTGTCTGTTATGATTGTCGAAGATTTTAACGGCGGTTTCAAACCATACAGTCTTGTTCTTTTCTCGTAACTTCTATTTGTCTTCAAACCCTGTGATGTTTCCCTTCCAGTTTGGAAGTTCCAATAAACTATTAACAGCTTCTACCGTACATTTATTTAAGAAACACCTAATTTATGTCGCGTGGGGAGATATTGGAAGCGTGTCCTATTTTTTTCTGGAAGATGACACCAATAAAGTTTAGTACGTGTTCGTCGTGCTAACGAAAAATGCTCTGCTATAAAAGTTACAAGGTCAGTTGTTCTCAGCCGGCATATATAACTTTTTTCTACCCAATAACCCTGTGTTTGGAGCATACTCTAAAAAAGACGGGCCGGGTCAGAGAAGTTACTGTTAACCCGGCCCCTTGCAAGTATGCTGTGAAGTCGTCACAAGTCCTAGACTTCCCTGTGTGAAACTTGAGTGAGATGTCAATTTGTTATAATTTCAATGAGCTCAAAAACAGGCGCGAATTCAACGTCCGTTTTTTGGGATTTTTCCGCATATTGGTGTTGCACAGGTACCTCGAATTTGGTCTGTAATTTCCTTTTCTCTTTCTATGCCCATTTTTCGCCTGAAAAAAAAATTATCCGTGTCAATTACTGGGTTTCCAATAAACCGTGTGTGGAGTAACCAATCTGTGTTTTCCTTTTCTTCTTTCAGGTTGAAATTCAGTTCTAGCCGTTGAATTGACTTTCAACTCGTTTTCTTTTTAATTTTTTTTCGTCTATAGTTTAAGTTTCGCTATCTTATCAGCGACGAATAGAAATTTACTCTTCGAATTCCTTGTCCCTTTTGTACAA</canonical>
            <polymorphic>GACGTCATTCAGGATCTAGTTCGACCCCACGGGGATAGGAGGTTGAGATAGTGATAACAAGTAGATAATAAATTCAATTTTACAGAGAAAGATTTTGCCACCAGAAACAATGCTTTGAGCCGGTCGATGTATATTCAGTGTCCAACGAAAACAACAAGAAATTGTCTGTTATGATTGTCGAAGATTTTAACGGCGGTTTCAAACCATACAGTCTTGTTCTTTTCTCGTAACTTCTATTTGTCTTCAAACCCTGTGATGTTTCCCTTCCAGTTTGGAAGTTCCAATAAACTATTAACAGCTTCTACCGTACATTTATTTAAGAAACACCTAATTTATGTCGCGTGGGGAGATATTGGAAGCGTGTCCTATTTTTTTCTGGAAGATGACACCAATAAAGTTTAGTACGTGTTCGTCGTGCTAACGAAAAATGCTCTGCTATAAAAGTTACAAGGTCAGTTGTTCTCAGCCGGCATATATAACTTTTTTCTACCCAATAACCSTGTGTTTGGAGCATACTCTAAAAAAGACGGGCCGGGTCAGAGAAGTTACTGTTAACCCGGCCCCTTGCAAGTATGCTGTGAAGTCGTCACAAGTCCTAGACTTCCCTGTGTGAAACTTGAGTGAGATGTCAATTTGTTATAATTTCAATGAGCTCAAAAACAGGCGCGAATTCAACGTCCGTTTTTTGGGATTTTTCCGCATATTGGTGTTGCACAGGTACCTCGAATTTGGTCTGTAATTTCCTTTTCTCTTTCTATGCCCATTTTTCGCCTGAAAAAAAAATTATCCGTGTCAATTACTGGGTTTCCAATAAACCGTGTGTGGAGTAACCAATCTGTGTTTTCCTTTTCTTCTTTCAGGTTGAAATTCAGTTCTAGCCGTTGAATTGACTTTCAACTCGTTTTCTTTTTAATTTTTTTTCGTCTATAGTTTAAGTTTCGCTATCTTATCAGCGACGAATAGAAATTTACTCTTCGAATTCCTTGTCCCTTTTGTACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>505 297 180 18</canonical_bands>
                <polymorphic_bands>685 297 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTTAGTACGTGTTCGTCGT</pcr_primer_p1>
		<pcr_primer_p2>TAACAAATTGACATCTCACTCAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAGTTTAGTACGTGTTCGTCGTGCTAACGAAAAATGCTCTGCTATAAAAGTTACAAGGTCAGTTGTTCTCAGCCGGCATATATAACTTTTTTCTACCCAATAACCCTGTGTTTGGAGCATACTCTAAAAAAGACGGGCCGGGTCAGAGAAGTTACTGTTAACCCGGCCCCTTGCAAGTATGCTGTGAAGTCGTCACAAGTCCTAGACTTCCCTGTGTGAAACTTGAGTGAGATGTCAATTTGTTA</canonical_amplicon>
		<polymorphic_amplicon>AAGTTTAGTACGTGTTCGTCGTGCTAACGAAAAATGCTCTGCTATAAAAGTTACAAGGTCAGTTGTTCTCAGCCGGCATATATAACTTTTTTCTACCCAATAACCSTGTGTTTGGAGCATACTCTAAAAAAGACGGGCCGGGTCAGAGAAGTTACTGTTAACCCGGCCCCTTGCAAGTATGCTGTGAAGTCGTCACAAGTCCTAGACTTCCCTGTGTGAAACTTGAGTGAGATGTCAATTTGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb1981</snp_id>
        <super_contig>c000800832.Contig2</super_contig>
        <contig_pos>38583</contig_pos>
        <strand></strand>
        <context>AAAATGGAAG[C/A]AAGATGAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CAATGGGAGGAGGAAGAATGTGTTCGAAAGTGACTATGAGAAAATGGAAG</left_flank>
        <right_flank>AAGATGAAAGAATGATGGAGAAAAAGATATAAAGATAAGAGATCAAATTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGAGCAATGGAAGGCATTGAGTACATCAATTTTCAACTTCTTCGGAATGGAGTTCCTAGATTAAAACCTTCGACGTTATAGACTCAAACGTTTTTCTGTTCGAAAGATTCGGGCAAGCTGTTTCAGGAATCGGGACGCTGTGAGTGGCCTGAAATTCATTTGGGCCGCGATCTCTTACCAAGCCTTTTGGAAGTCTGTGCGGATTCTGGTCGAATTCTATTCTCAATTAACTTCTCTCTCTCTCTCTCTCTCTCTNNNNNNNNCACCCTCTCTCCTCTCTCTCTCTCTTCTCTCTCTCTCTTCTTTGTTTCGAAAAAAAGTAAGATGAGAACTTTGGAAATATTTACATTCGTTTTAGTTTTTTGGGATTCAATTGAAAGTTTCAAAAAAAGTATCACAAGAGCACAGAGAGAAAACCAAAATCTTTTTGAAAAAGAAGAAGAAAGCCAATGGGAGGAGGAAGAATGTGTTCGAAAGTGACTATGAGAAAATGGAAGCAAGATGAAAGAATGATGGAGAAAAAGATATAAAGATAAGAGATCAAATTGAAGAAACTTGAAGAGATGGGGAAAGTGTGTGAGAATGTGAAGAATGGAATGTTCTGGAAAAAAAATTTGAAAAAGATGAAAACTTGTTAATCGAAGTTTCGTTCAGCGGAAATAAAGTATTGAGAGACAACGGAAACTGAAAAATAAACGAGAGGAAGTTTTCAATTATCTCAAATACTTTTTAATTGAATTCCAGAAAAAATTCCATTTTTCTGGAAAGAGTTTGGCGAAGTATGATAAAATACACAAAAGAAGGATTCTGGGAAAAAGAAGAAAAGCCGAAAAATGGTCAGTTTGTCGTTGTCGTTTTGAAGAGAAAAAGATGAAGGCGAGGAAAAAAAAGAAGTTGATGTGTGCTTTTACATTACGGATGCACACTTTTCCGTTTTTAGGAAAAGAATAAAAGAAAAAAGAAGATAGGAAAACGAGTTGGCGTCAACCAAGAAGACA</canonical>
            <polymorphic>GTGGAGCAATGGAAGGCATTGAGTACATCAATTTTCAACTTCTTCGGAATGGAGTTCCTAGATTAAAACCTTCGACGTTATAGACTCAAACGTTTTTCTGTTCGAAAGATTCGGGCAAGCTGTTTCAGGAATCGGGACGCTGTGAGTGGCCTGAAATTCATTTGGGCCGCGATCTCTTACCAAGCCTTTTGGAAGTCTGTGCGGATTCTGGTCGAATTCTATTCTCAATTAACTTCTCTCTCTCTCTCTCTCTCTCTNNNNNNNNCACCCTCTCTCCTCTCTCTCTCTCTTCTCTCTCTCTCTTCTTTGTTTCGAAAAAAAGTAAGATGAGAACTTTGGAAATATTTACATTCGTTTTAGTTTTTTGGGATTCAATTGAAAGTTTCAAAAAAAGTATCACAAGAGCACAGAGAGAAAACCAAAATCTTTTTGAAAAAGAAGAAGAAAGCCAATGGGAGGAGGAAGAATGTGTTCGAAAGTGACTATGAGAAAATGGAAGMAAGATGAAAGAATGATGGAGAAAAAGATATAAAGATAAGAGATCAAATTGAAGAAACTTGAAGAGATGGGGAAAGTGTGTGAGAATGTGAAGAATGGAATGTTCTGGAAAAAAAATTTGAAAAAGATGAAAACTTGTTAATCGAAGTTTCGTTCAGCGGAAATAAAGTATTGAGAGACAACGGAAACTGAAAAATAAACGAGAGGAAGTTTTCAATTATCTCAAATACTTTTTAATTGAATTCCAGAAAAAATTCCATTTTTCTGGAAAGAGTTTGGCGAAGTATGATAAAATACACAAAAGAAGGATTCTGGGAAAAAGAAGAAAAGCCGAAAAATGGTCAGTTTGTCGTTGTCGTTTTGAAGAGAAAAAGATGAAGGCGAGGAAAAAAAAGAAGTTGATGTGTGCTTTTACATTACGGATGCACACTTTTCCGTTTTTAGGAAAAGAATAAAAGAAAAAAGAAGATAGGAAAACGAGTTGGCGTCAACCAAGAAGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGTATCACAAGAGCACAGAG</pcr_primer_p1>
		<pcr_primer_p2>AACAAGTTTTCATCTTTTTCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAGTATCACAAGAGCACAGAGAGAAAACCAAAATCTTTTTGAAAAAGAAGAAGAAAGCCAATGGGAGGAGGAAGAATGTGTTCGAAAGTGACTATGAGAAAATGGAAGCAAGATGAAAGAATGATGGAGAAAAAGATATAAAGATAAGAGATCAAATTGAAGAAACTTGAAGAGATGGGGAAAGTGTGTGAGAATGTGAAGAATGGAATGTTCTGGAAAAAAAATTTGAAAAAGATGAAAACTTGTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGTATCACAAGAGCACAGAGAGAAAACCAAAATCTTTTTGAAAAAGAAGAAGAAAGCCAATGGGAGGAGGAAGAATGTGTTCGAAAGTGACTATGAGAAAATGGAAGMAAGATGAAAGAATGATGGAGAAAAAGATATAAAGATAAGAGATCAAATTGAAGAAACTTGAAGAGATGGGGAAAGTGTGTGAGAATGTGAAGAATGGAATGTTCTGGAAAAAAAATTTGAAAAAGATGAAAACTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2025</snp_id>
        <super_contig>c000800832.Contig2</super_contig>
        <contig_pos>170710</contig_pos>
        <strand>+</strand>
        <context>TCTGCAGGTA[C/T]AGTTGGCTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTTCATCATTATAACTGGACATATGTGGCAGTTTTGTATTCTGCAGGTA</left_flank>
        <right_flank>AGTTGGCTTCGACAATAACCTTGACAAGAGAGGGGAGAGGATTTTCGGAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACAGTAAATAAGCTAAACGAAGAGTTACCATTTAAATTAGGTTTATCTATACGGTATGGTTTTTCCTACTCCATTCAAAGCAACTATTTTCGGTTTTTCAGAGATTCTTGTTGGACAGAACGAATAGCAATGGAACAGACAATAGCGTTTTTAAGAGAAGGAGTTGCTCAATGTTCTTGTTGTCAAACACCTGGATGCAACAAGAAAAGTGTTCCTGTGGTGGCTGTTATTGGACCTGGAAAGAGTTCATCGACGATTGCAGTTCAGAACTTATTACAGGTAAACTCATATTCAAAATTCTTTTCAAAATCATTAAGTTTAAGGTTTTTCGAATACCTCAAGTCGGATATTCAGCCACCACACCCGATTTATCCGACAAAGAACAATTTGGTTATTTTCTTCGCGTTGTTCCATCTGATGTCTTTCAAGCACAAGCTATAAATCGACTGCTTCATCATTATAACTGGACATATGTGGCAGTTTTGTATTCTGCAGGTACAGTTGGCTTCGACAATAACCTTGACAAGAGAGGGGAGAGGATTTTCGGAGTTAGGGTATGCATTCTTTGCCCGCGTGGCTCAGTCAGTATACCGCTTTAGCGGCGCTGAACCTTCAATACTCGTCCCACAAGTTCACCATCTCGAGCGGCTTATATGAATAACACTTCGAGACAGTTATTTTTTTTTTAATGTCAGCCCACCTTTGATTGATTGAATCAGATTCTGTACTGCTCCTTTTCCGGACATTCGGTTTGGTAGCTACAGTTATTATTTGAGCTTAACCAAAATGTGCTGATTCCCTATATAAGATGCTCCCCAGTTTCTCACACCCTCTCTATATGTTTTTAACCCTTTCTAACCTCTTTCCTATTCATTCACCCCTACTTTTTTTGCTTCTTCTTCTTATGCCCTGCGGGTGCTTCAAGTAGAATCGAATTTGTGTCTATCTCGTTTTTGCTATCTGATGATACAAGAAGAAGATGAAGAAGAAAGAGAGGAA</canonical>
            <polymorphic>CACAGTAAATAAGCTAAACGAAGAGTTACCATTTAAATTAGGTTTATCTATACGGTATGGTTTTTCCTACTCCATTCAAAGCAACTATTTTCGGTTTTTCAGAGATTCTTGTTGGACAGAACGAATAGCAATGGAACAGACAATAGCGTTTTTAAGAGAAGGAGTTGCTCAATGTTCTTGTTGTCAAACACCTGGATGCAACAAGAAAAGTGTTCCTGTGGTGGCTGTTATTGGACCTGGAAAGAGTTCATCGACGATTGCAGTTCAGAACTTATTACAGGTAAACTCATATTCAAAATTCTTTTCAAAATCATTAAGTTTAAGGTTTTTCGAATACCTCAAGTCGGATATTCAGCCACCACACCCGATTTATCCGACAAAGAACAATTTGGTTATTTTCTTCGCGTTGTTCCATCTGATGTCTTTCAAGCACAAGCTATAAATCGACTGCTTCATCATTATAACTGGACATATGTGGCAGTTTTGTATTCTGCAGGTAYAGTTGGCTTCGACAATAACCTTGACAAGAGAGGGGAGAGGATTTTCGGAGTTAGGGTATGCATTCTTTGCCCGCGTGGCTCAGTCAGTATACCGCTTTAGCGGCGCTGAACCTTCAATACTCGTCCCACAAGTTCACCATCTCGAGCGGCTTATATGAATAACACTTCGAGACAGTTATTTTTTTTTTAATGTCAGCCCACCTTTGATTGATTGAATCAGATTCTGTACTGCTCCTTTTCCGGACATTCGGTTTGGTAGCTACAGTTATTATTTGAGCTTAACCAAAATGTGCTGATTCCCTATATAAGATGCTCCCCAGTTTCTCACACCCTCTCTATATGTTTTTAACCCTTTCTAACCTCTTTCCTATTCATTCACCCCTACTTTTTTTGCTTCTTCTTCTTATGCCCTGCGGGTGCTTCAAGTAGAATCGAATTTGTGTCTATCTCGTTTTTGCTATCTGATGATACAAGAAGAAGATGAAGAAGAAAGAGAGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>498 273 229</canonical_bands>
                <polymorphic_bands>727 273</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>447 236 173 90 50 4</canonical_bands>
                <polymorphic_bands>620 236 90 50 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTCAAGCACAAGCTATAAATC</pcr_primer_p1>
		<pcr_primer_p2>TCTCGAAGTGTTATTCATATAAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTCAAGCACAAGCTATAAATCGACTGCTTCATCATTATAACTGGACATATGTGGCAGTTTTGTATTCTGCAGGTACAGTTGGCTTCGACAATAACCTTGACAAGAGAGGGGAGAGGATTTTCGGAGTTAGGGTATGCATTCTTTGCCCGCGTGGCTCAGTCAGTATACCGCTTTAGCGGCGCTGAACCTTCAATACTCGTCCCACAAGTTCACCATCTCGAGCGGCTTATATGAATAACACTTCGAGA</canonical_amplicon>
		<polymorphic_amplicon>CTTTCAAGCACAAGCTATAAATCGACTGCTTCATCATTATAACTGGACATATGTGGCAGTTTTGTATTCTGCAGGTAYAGTTGGCTTCGACAATAACCTTGACAAGAGAGGGGAGAGGATTTTCGGAGTTAGGGTATGCATTCTTTGCCCGCGTGGCTCAGTCAGTATACCGCTTTAGCGGCGCTGAACCTTCAATACTCGTCCCACAAGTTCACCATCTCGAGCGGCTTATATGAATAACACTTCGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2026</snp_id>
        <super_contig>c000800832.Contig2</super_contig>
        <contig_pos>170508</contig_pos>
        <strand>+</strand>
        <context>CATATTCAAA[A/G]TTCTTTTCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATCGACGATTGCAGTTCAGAACTTATTACAGGTAAACTCATATTCAAA</left_flank>
        <right_flank>TTCTTTTCAAAATCATTAAGTTTAAGGTTTTTCGAATACCTCAAGTCGGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACGGTACTTTGTATGTTTCTGAAATAAACGATAACTTCAGATCAGATAACCGTTCTGAATTGACCATAATTTATAATGTGAAAACAAGCCAACTTTTAGATCGGTGCATTATTTCCAATTCATCGTCAAATCGCCGGATCTGAGAGTTGTGGAGAGATATGGGAGCAATACGGAATACAACGGTCGGAAATAGCAATGCACACAGTAAATAAGCTAAACGAAGAGTTACCATTTAAATTAGGTTTATCTATACGGTATGGTTTTTCCTACTCCATTCAAAGCAACTATTTTCGGTTTTTCAGAGATTCTTGTTGGACAGAACGAATAGCAATGGAACAGACAATAGCGTTTTTAAGAGAAGGAGTTGCTCAATGTTCTTGTTGTCAAACACCTGGATGCAACAAGAAAAGTGTTCCTGTGGTGGCTGTTATTGGACCTGGAAAGAGTTCATCGACGATTGCAGTTCAGAACTTATTACAGGTAAACTCATATTCAAAATTCTTTTCAAAATCATTAAGTTTAAGGTTTTTCGAATACCTCAAGTCGGATATTCAGCCACCACACCCGATTTATCCGACAAAGAACAATTTGGTTATTTTCTTCGCGTTGTTCCATCTGATGTCTTTCAAGCACAAGCTATAAATCGACTGCTTCATCATTATAACTGGACATATGTGGCAGTTTTGTATTCTGCAGGTACAGTTGGCTTCGACAATAACCTTGACAAGAGAGGGGAGAGGATTTTCGGAGTTAGGGTATGCATTCTTTGCCCGCGTGGCTCAGTCAGTATACCGCTTTAGCGGCGCTGAACCTTCAATACTCGTCCCACAAGTTCACCATCTCGAGCGGCTTATATGAATAACACTTCGAGACAGTTATTTTTTTTTTAATGTCAGCCCACCTTTGATTGATTGAATCAGATTCTGTACTGCTCCTTTTCCGGACATTCGGTTTGGTAGCTACAGTTATTATTTGAGCTTAACCAAAATGTGCTGATT</canonical>
            <polymorphic>TTACGGTACTTTGTATGTTTCTGAAATAAACGATAACTTCAGATCAGATAACCGTTCTGAATTGACCATAATTTATAATGTGAAAACAAGCCAACTTTTAGATCGGTGCATTATTTCCAATTCATCGTCAAATCGCCGGATCTGAGAGTTGTGGAGAGATATGGGAGCAATACGGAATACAACGGTCGGAAATAGCAATGCACACAGTAAATAAGCTAAACGAAGAGTTACCATTTAAATTAGGTTTATCTATACGGTATGGTTTTTCCTACTCCATTCAAAGCAACTATTTTCGGTTTTTCAGAGATTCTTGTTGGACAGAACGAATAGCAATGGAACAGACAATAGCGTTTTTAAGAGAAGGAGTTGCTCAATGTTCTTGTTGTCAAACACCTGGATGCAACAAGAAAAGTGTTCCTGTGGTGGCTGTTATTGGACCTGGAAAGAGTTCATCGACGATTGCAGTTCAGAACTTATTACAGGTAAACTCATATTCAAARTTCTTTTCAAAATCATTAAGTTTAAGGTTTTTCGAATACCTCAAGTCGGATATTCAGCCACCACACCCGATTTATCCGACAAAGAACAATTTGGTTATTTTCTTCGCGTTGTTCCATCTGATGTCTTTCAAGCACAAGCTATAAATCGACTGCTTCATCATTATAACTGGACATATGTGGCAGTTTTGTATTCTGCAGGTACAGTTGGCTTCGACAATAACCTTGACAAGAGAGGGGAGAGGATTTTCGGAGTTAGGGTATGCATTCTTTGCCCGCGTGGCTCAGTCAGTATACCGCTTTAGCGGCGCTGAACCTTCAATACTCGTCCCACAAGTTCACCATCTCGAGCGGCTTATATGAATAACACTTCGAGACAGTTATTTTTTTTTTAATGTCAGCCCACCTTTGATTGATTGAATCAGATTCTGTACTGCTCCTTTTCCGGACATTCGGTTTGGTAGCTACAGTTATTATTTGAGCTTAACCAAAATGTGCTGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>413 261 119 89 59 49 10</canonical_bands>
                <polymorphic_bands>413 350 119 59 49 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAGCGTTTTTAAGAGAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>CAAATTGTTCTTTGTCGGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATAGCGTTTTTAAGAGAAGGAGTTGCTCAATGTTCTTGTTGTCAAACACCTGGATGCAACAAGAAAAGTGTTCCTGTGGTGGCTGTTATTGGACCTGGAAAGAGTTCATCGACGATTGCAGTTCAGAACTTATTACAGGTAAACTCATATTCAAAATTCTTTTCAAAATCATTAAGTTTAAGGTTTTTCGAATACCTCAAGTCGGATATTCAGCCACCACACCCGATTTATCCGACAAAGAACAATTTG</canonical_amplicon>
		<polymorphic_amplicon>AATAGCGTTTTTAAGAGAAGGAGTTGCTCAATGTTCTTGTTGTCAAACACCTGGATGCAACAAGAAAAGTGTTCCTGTGGTGGCTGTTATTGGACCTGGAAAGAGTTCATCGACGATTGCAGTTCAGAACTTATTACAGGTAAACTCATATTCAAARTTCTTTTCAAAATCATTAAGTTTAAGGTTTTTCGAATACCTCAAGTCGGATATTCAGCCACCACACCCGATTTATCCGACAAAGAACAATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2027</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>16399</contig_pos>
        <strand>+</strand>
        <context>CTATAGTAAC[A/G]ATCGATAGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAAC</left_flank>
        <right_flank>ATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGCGTGAAGATCACGGCTGGCCAGACGAACGCCAACGGTTTCGGTCCATTTCACAAGGGCGACCTGAAAATTTTTAAAGTTTTTGGGCTGTTTCAGACGAGTTTTGAGGTAGTTTAGGTCGATTTTTCAGCTATTTTAGAATCATTTCCAATCATTTTCAGCCAATTTTTCGAGAAGTTTCAGAGCTGGCTTTTTTTTTCTAGGGCTGATTCTGGGGCAAGGTACTAGCTACAGTACCCCAAAAAGAACTACAGTAATCCCGGAAAATAGCTACAGTAGACTCTTGAACTACAATAACCGCAGAAACTACAGTAACCTCGAAAACAACTACAGTAATCCCTCGAACTACAGTAACGTCCGAAAAATCTACACTTATCCCGAAAATGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTC</canonical>
            <polymorphic>TCGCGTGAAGATCACGGCTGGCCAGACGAACGCCAACGGTTTCGGTCCATTTCACAAGGGCGACCTGAAAATTTTTAAAGTTTTTGGGCTGTTTCAGACGAGTTTTGAGGTAGTTTAGGTCGATTTTTCAGCTATTTTAGAATCATTTCCAATCATTTTCAGCCAATTTTTCGAGAAGTTTCAGAGCTGGCTTTTTTTTTCTAGGGCTGATTCTGGGGCAAGGTACTAGCTACAGTACCCCAAAAAGAACTACAGTAATCCCGGAAAATAGCTACAGTAGACTCTTGAACTACAATAACCGCAGAAACTACAGTAACCTCGAAAACAACTACAGTAATCCCTCGAACTACAGTAACGTCCGAAAAATCTACACTTATCCCGAAAATGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACRATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>490 222 165 114 9</canonical_bands>
                <polymorphic_bands>712 165 114 9</polymorphic_bands>
            </assay>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CGATCG</site>
                <isoschizomers>
                    <enzyme>BspCI</enzyme>
                    <enzyme>Ple19I</enzyme>
                    <enzyme>PvuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGCTACAGTAACCTCAAGAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAAACTGTACGAATTGAGATT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAATGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTG</canonical_amplicon>
		<polymorphic_amplicon>AAATGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACRATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2028</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>16543</contig_pos>
        <strand>+</strand>
        <context>CAGTAATCCC[A/G]AAAAAGCTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCC</left_flank>
        <right_flank>AAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCCAATCATTTTCAGCCAATTTTTCGAGAAGTTTCAGAGCTGGCTTTTTTTTTCTAGGGCTGATTCTGGGGCAAGGTACTAGCTACAGTACCCCAAAAAGAACTACAGTAATCCCGGAAAATAGCTACAGTAGACTCTTGAACTACAATAACCGCAGAAACTACAGTAACCTCGAAAACAACTACAGTAATCCCTCGAACTACAGTAACGTCCGAAAAATCTACACTTATCCCGAAAATGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGACACAAAGCGATCGCTTCCACGGCGTTTTGTAGTTTCGCCGCGAATGAGTGTCTGGAAAGAAAGGGATT</canonical>
            <polymorphic>ATTTCCAATCATTTTCAGCCAATTTTTCGAGAAGTTTCAGAGCTGGCTTTTTTTTTCTAGGGCTGATTCTGGGGCAAGGTACTAGCTACAGTACCCCAAAAAGAACTACAGTAATCCCGGAAAATAGCTACAGTAGACTCTTGAACTACAATAACCGCAGAAACTACAGTAACCTCGAAAACAACTACAGTAATCCCTCGAACTACAGTAACGTCCGAAAAATCTACACTTATCCCGAAAATGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCRAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGACACAAAGCGATCGCTTCCACGGCGTTTTGTAGTTTCGCCGCGAATGAGTGTCTGGAAAGAAAGGGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTACTACAGTAACCTCCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GATCTTCGTAGCTAGCTTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>TTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATC</canonical_amplicon>
		<polymorphic_amplicon>TTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCRAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2029</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>16561</contig_pos>
        <strand>+</strand>
        <context>TACAGTAATC[C/T]CCTGAATAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATC</left_flank>
        <right_flank>CCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAATTTTTCGAGAAGTTTCAGAGCTGGCTTTTTTTTTCTAGGGCTGATTCTGGGGCAAGGTACTAGCTACAGTACCCCAAAAAGAACTACAGTAATCCCGGAAAATAGCTACAGTAGACTCTTGAACTACAATAACCGCAGAAACTACAGTAACCTCGAAAACAACTACAGTAATCCCTCGAACTACAGTAACGTCCGAAAAATCTACACTTATCCCGAAAATGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGACACAAAGCGATCGCTTCCACGGCGTTTTGTAGTTTCGCCGCGAATGAGTGTCTGGAAAGAAAGGGATTACTGTAGCTTTGATGGGT</canonical>
            <polymorphic>CCAATTTTTCGAGAAGTTTCAGAGCTGGCTTTTTTTTTCTAGGGCTGATTCTGGGGCAAGGTACTAGCTACAGTACCCCAAAAAGAACTACAGTAATCCCGGAAAATAGCTACAGTAGACTCTTGAACTACAATAACCGCAGAAACTACAGTAACCTCGAAAACAACTACAGTAATCCCTCGAACTACAGTAACGTCCGAAAAATCTACACTTATCCCGAAAATGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCYCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGACACAAAGCGATCGCTTCCACGGCGTTTTGTAGTTTCGCCGCGAATGAGTGTCTGGAAAGAAAGGGATTACTGTAGCTTTGATGGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>327 263 138 112 94 34 22 10</canonical_bands>
                <polymorphic_bands>401 327 112 94 34 22 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTACTACAGTAACCTCCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GATCTTCGTAGCTAGCTTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>TTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATC</canonical_amplicon>
		<polymorphic_amplicon>TTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCYCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2030</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>16583</contig_pos>
        <strand>+</strand>
        <context>TACAGTAATC[C/T]TTTGAACTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATC</left_flank>
        <right_flank>TTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTGGCTTTTTTTTTCTAGGGCTGATTCTGGGGCAAGGTACTAGCTACAGTACCCCAAAAAGAACTACAGTAATCCCGGAAAATAGCTACAGTAGACTCTTGAACTACAATAACCGCAGAAACTACAGTAACCTCGAAAACAACTACAGTAATCCCTCGAACTACAGTAACGTCCGAAAAATCTACACTTATCCCGAAAATGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGACACAAAGCGATCGCTTCCACGGCGTTTTGTAGTTTCGCCGCGAATGAGTGTCTGGAAAGAAAGGGATTACTGTAGCTTTGATGGGTTACTGTAGCTCTCTCACTTGGC</canonical>
            <polymorphic>AGCTGGCTTTTTTTTTCTAGGGCTGATTCTGGGGCAAGGTACTAGCTACAGTACCCCAAAAAGAACTACAGTAATCCCGGAAAATAGCTACAGTAGACTCTTGAACTACAATAACCGCAGAAACTACAGTAACCTCGAAAACAACTACAGTAATCCCTCGAACTACAGTAACGTCCGAAAAATCTACACTTATCCCGAAAATGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCYTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGACACAAAGCGATCGCTTCCACGGCGTTTTGTAGTTTCGCCGCGAATGAGTGTCTGGAAAGAAAGGGATTACTGTAGCTTTGATGGGTTACTGTAGCTCTCTCACTTGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCGTACAGTTTTTGCATTA</pcr_primer_p1>
		<pcr_primer_p2>GGTCACTGTAGTTCAAAGGATTA</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>AATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACC</canonical_amplicon>
		<polymorphic_amplicon>AATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCYTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2031</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>16595</contig_pos>
        <strand>+</strand>
        <context>TTGAACTACA[A/G]TAACCCCGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACA</left_flank>
        <right_flank>TAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCTAGGGCTGATTCTGGGGCAAGGTACTAGCTACAGTACCCCAAAAAGAACTACAGTAATCCCGGAAAATAGCTACAGTAGACTCTTGAACTACAATAACCGCAGAAACTACAGTAACCTCGAAAACAACTACAGTAATCCCTCGAACTACAGTAACGTCCGAAAAATCTACACTTATCCCGAAAATGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGACACAAAGCGATCGCTTCCACGGCGTTTTGTAGTTTCGCCGCGAATGAGTGTCTGGAAAGAAAGGGATTACTGTAGCTTTGATGGGTTACTGTAGCTCTCTCACTTGGCCATTCTACCAGC</canonical>
            <polymorphic>TTTTCTAGGGCTGATTCTGGGGCAAGGTACTAGCTACAGTACCCCAAAAAGAACTACAGTAATCCCGGAAAATAGCTACAGTAGACTCTTGAACTACAATAACCGCAGAAACTACAGTAACCTCGAAAACAACTACAGTAATCCCTCGAACTACAGTAACGTCCGAAAAATCTACACTTATCCCGAAAATGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACARTAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGACACAAAGCGATCGCTTCCACGGCGTTTTGTAGTTTCGCCGCGAATGAGTGTCTGGAAAGAAAGGGATTACTGTAGCTTTGATGGGTTACTGTAGCTCTCTCACTTGGCCATTCTACCAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCGTACAGTTTTTGCATTA</pcr_primer_p1>
		<pcr_primer_p2>GGTCACTGTAGTTCAAAGGATTA</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>AATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACC</canonical_amplicon>
		<polymorphic_amplicon>AATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACARTAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2032</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>16644</contig_pos>
        <strand>+</strand>
        <context>ACAGTAACCC[C/T]GTRAAAGCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCC</left_flank>
        <right_flank>GTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAACTACAGTAATCCCGGAAAATAGCTACAGTAGACTCTTGAACTACAATAACCGCAGAAACTACAGTAACCTCGAAAACAACTACAGTAATCCCTCGAACTACAGTAACGTCCGAAAAATCTACACTTATCCCGAAAATGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGACACAAAGCGATCGCTTCCACGGCGTTTTGTAGTTTCGCCGCGAATGAGTGTCTGGAAAGAAAGGGATTACTGTAGCTTTGATGGGTTACTGTAGCTCTCTCACTTGGCCATTCTACCAGCATATCCACTCTTCACATGTTGTGCCACCTCTTCAAACGCGTCCGAATTG</canonical>
            <polymorphic>AGAACTACAGTAATCCCGGAAAATAGCTACAGTAGACTCTTGAACTACAATAACCGCAGAAACTACAGTAACCTCGAAAACAACTACAGTAATCCCTCGAACTACAGTAACGTCCGAAAAATCTACACTTATCCCGAAAATGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCYGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGACACAAAGCGATCGCTTCCACGGCGTTTTGTAGTTTCGCCGCGAATGAGTGTCTGGAAAGAAAGGGATTACTGTAGCTTTGATGGGTTACTGTAGCTCTCTCACTTGGCCATTCTACCAGCATATCCACTCTTCACATGTTGTGCCACCTCTTCAAACGCGTCCGAATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCGTACAGTTTTTGCATTA</pcr_primer_p1>
		<pcr_primer_p2>GGTCACTGTAGTTCAAAGGATTA</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>AATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACC</canonical_amplicon>
		<polymorphic_amplicon>AATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCYGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2033</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>16647</contig_pos>
        <strand>+</strand>
        <context>GTAACCCYGT[A/G]AAAGCTACAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGT</left_flank>
        <right_flank>AAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTACAGTAATCCCGGAAAATAGCTACAGTAGACTCTTGAACTACAATAACCGCAGAAACTACAGTAACCTCGAAAACAACTACAGTAATCCCTCGAACTACAGTAACGTCCGAAAAATCTACACTTATCCCGAAAATGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGACACAAAGCGATCGCTTCCACGGCGTTTTGTAGTTTCGCCGCGAATGAGTGTCTGGAAAGAAAGGGATTACTGTAGCTTTGATGGGTTACTGTAGCTCTCTCACTTGGCCATTCTACCAGCATATCCACTCTTCACATGTTGTGCCACCTCTTCAAACGCGTCCGAATTGAAC</canonical>
            <polymorphic>ACTACAGTAATCCCGGAAAATAGCTACAGTAGACTCTTGAACTACAATAACCGCAGAAACTACAGTAACCTCGAAAACAACTACAGTAATCCCTCGAACTACAGTAACGTCCGAAAAATCTACACTTATCCCGAAAATGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTRAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGACACAAAGCGATCGCTTCCACGGCGTTTTGTAGTTTCGCCGCGAATGAGTGTCTGGAAAGAAAGGGATTACTGTAGCTTTGATGGGTTACTGTAGCTCTCTCACTTGGCCATTCTACCAGCATATCCACTCTTCACATGTTGTGCCACCTCTTCAAACGCGTCCGAATTGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCGTACAGTTTTTGCATTA</pcr_primer_p1>
		<pcr_primer_p2>GGTCACTGTAGTTCAAAGGATTA</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>AATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACC</canonical_amplicon>
		<polymorphic_amplicon>AATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTRAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2034</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>16678</contig_pos>
        <strand>+</strand>
        <context>CAAGCTACAA[A/C]GATTACTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAA</left_flank>
        <right_flank>GATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTCTTGAACTACAATAACCGCAGAAACTACAGTAACCTCGAAAACAACTACAGTAATCCCTCGAACTACAGTAACGTCCGAAAAATCTACACTTATCCCGAAAATGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGACACAAAGCGATCGCTTCCACGGCGTTTTGTAGTTTCGCCGCGAATGAGTGTCTGGAAAGAAAGGGATTACTGTAGCTTTGATGGGTTACTGTAGCTCTCTCACTTGGCCATTCTACCAGCATATCCACTCTTCACATGTTGTGCCACCTCTTCAAACGCGTCCGAATTGAACGCGACGGTTCCCAAGTGAATCTTCTTGAAGT</canonical>
            <polymorphic>GACTCTTGAACTACAATAACCGCAGAAACTACAGTAACCTCGAAAACAACTACAGTAATCCCTCGAACTACAGTAACGTCCGAAAAATCTACACTTATCCCGAAAATGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAMGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGACACAAAGCGATCGCTTCCACGGCGTTTTGTAGTTTCGCCGCGAATGAGTGTCTGGAAAGAAAGGGATTACTGTAGCTTTGATGGGTTACTGTAGCTCTCTCACTTGGCCATTCTACCAGCATATCCACTCTTCACATGTTGTGCCACCTCTTCAAACGCGTCCGAATTGAACGCGACGGTTCCCAAGTGAATCTTCTTGAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCGTACAGTTTTTGCATTA</pcr_primer_p1>
		<pcr_primer_p2>GGTCACTGTAGTTCAAAGGATTA</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>AATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACC</canonical_amplicon>
		<polymorphic_amplicon>AATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAMGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2035</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>16691</contig_pos>
        <strand>+</strand>
        <context>TTACTTGAAC[A/T]ACAGTAAYCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAAC</left_flank>
        <right_flank>ACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATAACCGCAGAAACTACAGTAACCTCGAAAACAACTACAGTAATCCCTCGAACTACAGTAACGTCCGAAAAATCTACACTTATCCCGAAAATGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGACACAAAGCGATCGCTTCCACGGCGTTTTGTAGTTTCGCCGCGAATGAGTGTCTGGAAAGAAAGGGATTACTGTAGCTTTGATGGGTTACTGTAGCTCTCTCACTTGGCCATTCTACCAGCATATCCACTCTTCACATGTTGTGCCACCTCTTCAAACGCGTCCGAATTGAACGCGACGGTTCCCAAGTGAATCTTCTTGAAGTGCATCTCATTCTT</canonical>
            <polymorphic>CAATAACCGCAGAAACTACAGTAACCTCGAAAACAACTACAGTAATCCCTCGAACTACAGTAACGTCCGAAAAATCTACACTTATCCCGAAAATGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACWACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGACACAAAGCGATCGCTTCCACGGCGTTTTGTAGTTTCGCCGCGAATGAGTGTCTGGAAAGAAAGGGATTACTGTAGCTTTGATGGGTTACTGTAGCTCTCTCACTTGGCCATTCTACCAGCATATCCACTCTTCACATGTTGTGCCACCTCTTCAAACGCGTCCGAATTGAACGCGACGGTTCCCAAGTGAATCTTCTTGAAGTGCATCTCATTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCGTACAGTTTTTGCATTA</pcr_primer_p1>
		<pcr_primer_p2>GGTCACTGTAGTTCAAAGGATTA</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>AATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACC</canonical_amplicon>
		<polymorphic_amplicon>AATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACWACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2036</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>16699</contig_pos>
        <strand>+</strand>
        <context>ACWACAGTAA[C/T]CCCGAAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAA</left_flank>
        <right_flank>CCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAGAAACTACAGTAACCTCGAAAACAACTACAGTAATCCCTCGAACTACAGTAACGTCCGAAAAATCTACACTTATCCCGAAAATGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGACACAAAGCGATCGCTTCCACGGCGTTTTGTAGTTTCGCCGCGAATGAGTGTCTGGAAAGAAAGGGATTACTGTAGCTTTGATGGGTTACTGTAGCTCTCTCACTTGGCCATTCTACCAGCATATCCACTCTTCACATGTTGTGCCACCTCTTCAAACGCGTCCGAATTGAACGCGACGGTTCCCAAGTGAATCTTCTTGAAGTGCATCTCATTCTTCGTCAGTG</canonical>
            <polymorphic>GCAGAAACTACAGTAACCTCGAAAACAACTACAGTAATCCCTCGAACTACAGTAACGTCCGAAAAATCTACACTTATCCCGAAAATGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAAYCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGACACAAAGCGATCGCTTCCACGGCGTTTTGTAGTTTCGCCGCGAATGAGTGTCTGGAAAGAAAGGGATTACTGTAGCTTTGATGGGTTACTGTAGCTCTCTCACTTGGCCATTCTACCAGCATATCCACTCTTCACATGTTGTGCCACCTCTTCAAACGCGTCCGAATTGAACGCGACGGTTCCCAAGTGAATCTTCTTGAAGTGCATCTCATTCTTCGTCAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>327 263 144 138 78 28 22</canonical_bands>
                <polymorphic_bands>465 263 144 78 28 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTCGTACAGTTTTTGCATTA</pcr_primer_p1>
		<pcr_primer_p2>GGTCACTGTAGTTCAAAGGATTA</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>AATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACC</canonical_amplicon>
		<polymorphic_amplicon>AATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAAYCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2037</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>16721</contig_pos>
        <strand>+</strand>
        <context>TACACATATC[A/C]CGTAAAAGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATC</left_flank>
        <right_flank>CGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACAACTACAGTAATCCCTCGAACTACAGTAACGTCCGAAAAATCTACACTTATCCCGAAAATGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGACACAAAGCGATCGCTTCCACGGCGTTTTGTAGTTTCGCCGCGAATGAGTGTCTGGAAAGAAAGGGATTACTGTAGCTTTGATGGGTTACTGTAGCTCTCTCACTTGGCCATTCTACCAGCATATCCACTCTTCACATGTTGTGCCACCTCTTCAAACGCGTCCGAATTGAACGCGACGGTTCCCAAGTGAATCTTCTTGAAGTGCATCTCATTCTTCGTCAGTGTTCCCGTCTTGTCCGATAGCAA</canonical>
            <polymorphic>AAACAACTACAGTAATCCCTCGAACTACAGTAACGTCCGAAAAATCTACACTTATCCCGAAAATGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCMCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGACACAAAGCGATCGCTTCCACGGCGTTTTGTAGTTTCGCCGCGAATGAGTGTCTGGAAAGAAAGGGATTACTGTAGCTTTGATGGGTTACTGTAGCTCTCTCACTTGGCCATTCTACCAGCATATCCACTCTTCACATGTTGTGCCACCTCTTCAAACGCGTCCGAATTGAACGCGACGGTTCCCAAGTGAATCTTCTTGAAGTGCATCTCATTCTTCGTCAGTGTTCCCGTCTTGTCCGATAGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCGTACAGTTTTTGCATTA</pcr_primer_p1>
		<pcr_primer_p2>GGTCACTGTAGTTCAAAGGATTA</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>AATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACC</canonical_amplicon>
		<polymorphic_amplicon>AATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCMCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2038</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>16742</contig_pos>
        <strand>+</strand>
        <context>ACAGTAATCT[A/T]AAGAAAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCT</left_flank>
        <right_flank>AAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACTACAGTAACGTCCGAAAAATCTACACTTATCCCGAAAATGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGACACAAAGCGATCGCTTCCACGGCGTTTTGTAGTTTCGCCGCGAATGAGTGTCTGGAAAGAAAGGGATTACTGTAGCTTTGATGGGTTACTGTAGCTCTCTCACTTGGCCATTCTACCAGCATATCCACTCTTCACATGTTGTGCCACCTCTTCAAACGCGTCCGAATTGAACGCGACGGTTCCCAAGTGAATCTTCTTGAAGTGCATCTCATTCTTCGTCAGTGTTCCCGTCTTGTCCGATAGCAAGAACGAGATTCTGCCCAGTTC</canonical>
            <polymorphic>GAACTACAGTAACGTCCGAAAAATCTACACTTATCCCGAAAATGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTWAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGACACAAAGCGATCGCTTCCACGGCGTTTTGTAGTTTCGCCGCGAATGAGTGTCTGGAAAGAAAGGGATTACTGTAGCTTTGATGGGTTACTGTAGCTCTCTCACTTGGCCATTCTACCAGCATATCCACTCTTCACATGTTGTGCCACCTCTTCAAACGCGTCCGAATTGAACGCGACGGTTCCCAAGTGAATCTTCTTGAAGTGCATCTCATTCTTCGTCAGTGTTCCCGTCTTGTCCGATAGCAAGAACGAGATTCTGCCCAGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTTAAG</site>
                <isoschizomers>
                    <enzyme>AflII</enzyme>
                    <enzyme>BfrI</enzyme>
                    <enzyme>BspTI</enzyme>
                    <enzyme>Bst98I</enzyme>
                    <enzyme>MspCI</enzyme>
                    <enzyme>Vha464I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>499 365 121 15</canonical_bands>
                <polymorphic_bands>514 365 121</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>502 443 55</canonical_bands>
                <polymorphic_bands>945 55</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAGCTAGCTACGAAGATCC</pcr_primer_p1>
		<pcr_primer_p2>TGTAGATCTTCCAGGGTCAC</pcr_primer_p2>
		<pcr_amplicon_size>189</pcr_amplicon_size>
		<canonical_amplicon>ACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACA</canonical_amplicon>
		<polymorphic_amplicon>ACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTWAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2039</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>16794</contig_pos>
        <strand>+</strand>
        <context>AAGATCTACA[A/G]TAATCCCCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACA</left_flank>
        <right_flank>TAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGACACAAAGCGATCGCTTCCACGGCGTTTTGTAGTTTCGCCGCGAATGAGTGTCTGGAAAGAAAGGGATTACTGTAGCTTTGATGGGTTACTGTAGCTCTCTCACTTGGCCATTCTACCAGCATATCCACTCTTCACATGTTGTGCCACCTCTTCAAACGCGTCCGAATTGAACGCGACGGTTCCCAAGTGAATCTTCTTGAAGTGCATCTCATTCTTCGTCAGTGTTCCCGTCTTGTCCGATAGCAAGAACGAGATTCTGCCCAGTTCTTCGGGAATCGTCGACGAGCGGATTACGGTATCCGGTATGTGCTTGTCGCGG</canonical>
            <polymorphic>ACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACARTAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGACACAAAGCGATCGCTTCCACGGCGTTTTGTAGTTTCGCCGCGAATGAGTGTCTGGAAAGAAAGGGATTACTGTAGCTTTGATGGGTTACTGTAGCTCTCTCACTTGGCCATTCTACCAGCATATCCACTCTTCACATGTTGTGCCACCTCTTCAAACGCGTCCGAATTGAACGCGACGGTTCCCAAGTGAATCTTCTTGAAGTGCATCTCATTCTTCGTCAGTGTTCCCGTCTTGTCCGATAGCAAGAACGAGATTCTGCCCAGTTCTTCGGGAATCGTCGACGAGCGGATTACGGTATCCGGTATGTGCTTGTCGCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTAACCCCGAACAAGCTAC</pcr_primer_p1>
		<pcr_primer_p2>ATGGAGAAACGTCGTATCAG</pcr_primer_p2>
		<pcr_amplicon_size>294</pcr_amplicon_size>
		<canonical_amplicon>AGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCAT</canonical_amplicon>
		<polymorphic_amplicon>AGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACARTAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2040</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>19577</contig_pos>
        <strand>+</strand>
        <context>GCACGACGTC[A/G]GCAGGCACAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAATGAAGCATGCGCCCGACTTGTCCGTTGTTCGCAGCAGCACGACGTC</left_flank>
        <right_flank>GCAGGCACACGACGGTCTTTGTGCATTATGATGACGTCACCGACCTGGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTATCTCGGTTACTATTAGAGATATCAAAAGTGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACATTTTATCAGTTGACAACTTTTTGATATCTCTGATAGGAACTGAGATAAATTGGCTCAAAAATCAAAGTTAGGGGGCCCTTCTATTACAGGTTTTCAGGTATTTTAGGAAAAGTTTTTTTTTCCAAATTTTTGGAATGTTGGATGTTCTGGAATTCTTCGATTTCTAGATTCCAAAATTCTACAAATCTGAAAATTTCGATTTTTCTTAAAAATCCTCACCTTCAACGTTCCCACAAACGCATGAATATCCTTTTGTGGCTTCTCCGCATAGACCTCACAATTCAACTCCATAATATCAGCTTCGTTAGGCAAGTGCTGGGTGTACGGTACCGGTATCCGCAGCTTCCAATCCGTCTCACCGTCGAGTTGGTCCGTTCGAATGAAGCATGCGCCCGACTTGTCCGTTGTTCGCAGCAGCACGACGTCGGCAGGCACACGACGGTCTTTGTGCATTATGATGACGTCACCGACCTGGAAAATGATAATTTTGAAGGGATTGGAATTCTAAAAAAGGCCATTTGACTATGAAAAATGTTTTTCGAGGGGAAAAGTCATATAACGGACCTAAAAATGCCAAAAATGGGCCCAAATTGAGCTAAAAACCGGTCCAAAACGGACCATACTCTATTTCCTTCTAGGTTCAACATTTCGGAACCATCTAAATTAGATATGATAGAAAAACTCAAGACTACAAAATGATACTAATTGGATTACTGTACCTTGTCTATGAACACAGTTACAAAGAGTCAAGAATATCGACCGCATAGCTCAGTCGGTTTTTGACCCTATAACTTTGTAGCTCTTGAGTTCTTCTATCATATCCAATTTAGTTGGTTTCAAAAATTTTGATTCTAGGAGAAATTATGACAGTGACCGTTTTTGATATATTTTTAGCGCATTTTTAGCCTATTTTTGCTCGTTTCTGGC</canonical>
            <polymorphic>AATTATCTCGGTTACTATTAGAGATATCAAAAGTGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACATTTTATCAGTTGACAACTTTTTGATATCTCTGATAGGAACTGAGATAAATTGGCTCAAAAATCAAAGTTAGGGGGCCCTTCTATTACAGGTTTTCAGGTATTTTAGGAAAAGTTTTTTTTTCCAAATTTTTGGAATGTTGGATGTTCTGGAATTCTTCGATTTCTAGATTCCAAAATTCTACAAATCTGAAAATTTCGATTTTTCTTAAAAATCCTCACCTTCAACGTTCCCACAAACGCATGAATATCCTTTTGTGGCTTCTCCGCATAGACCTCACAATTCAACTCCATAATATCAGCTTCGTTAGGCAAGTGCTGGGTGTACGGTACCGGTATCCGCAGCTTCCAATCCGTCTCACCGTCGAGTTGGTCCGTTCGAATGAAGCATGCGCCCGACTTGTCCGTTGTTCGCAGCAGCACGACGTCRGCAGGCACACGACGGTCTTTGTGCATTATGATGACGTCACCGACCTGGAAAATGATAATTTTGAAGGGATTGGAATTCTAAAAAAGGCCATTTGACTATGAAAAATGTTTTTCGAGGGGAAAAGTCATATAACGGACCTAAAAATGCCAAAAATGGGCCCAAATTGAGCTAAAAACCGGTCCAAAACGGACCATACTCTATTTCCTTCTAGGTTCAACATTTCGGAACCATCTAAATTAGATATGATAGAAAAACTCAAGACTACAAAATGATACTAATTGGATTACTGTACCTTGTCTATGAACACAGTTACAAAGAGTCAAGAATATCGACCGCATAGCTCAGTCGGTTTTTGACCCTATAACTTTGTAGCTCTTGAGTTCTTCTATCATATCCAATTTAGTTGGTTTCAAAAATTTTGATTCTAGGAGAAATTATGACAGTGACCGTTTTTGATATATTTTTAGCGCATTTTTAGCCTATTTTTGCTCGTTTCTGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCATAGACCTCACAATTCAACT</pcr_primer_p1>
		<pcr_primer_p2>ATTCCAATCCCTTCAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>GCATAGACCTCACAATTCAACTCCATAATATCAGCTTCGTTAGGCAAGTGCTGGGTGTACGGTACCGGTATCCGCAGCTTCCAATCCGTCTCACCGTCGAGTTGGTCCGTTCGAATGAAGCATGCGCCCGACTTGTCCGTTGTTCGCAGCAGCACGACGTCGGCAGGCACACGACGGTCTTTGTGCATTATGATGACGTCACCGACCTGGAAAATGATAATTTTGAAGGGATTGGAAT</canonical_amplicon>
		<polymorphic_amplicon>GCATAGACCTCACAATTCAACTCCATAATATCAGCTTCGTTAGGCAAGTGCTGGGTGTACGGTACCGGTATCCGCAGCTTCCAATCCGTCTCACCGTCGAGTTGGTCCGTTCGAATGAAGCATGCGCCCGACTTGTCCGTTGTTCGCAGCAGCACGACGTCRGCAGGCACACGACGGTCTTTGTGCATTATGATGACGTCACCGACCTGGAAAATGATAATTTTGAAGGGATTGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2041</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>19357</contig_pos>
        <strand>+</strand>
        <context>CRATTTTTCT[G/T]AAAAATCCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGATTTCTAGATTCCAAAATTCTACAAATCTGAAAATTTCGATTTTTCT</left_flank>
        <right_flank>AAAAATCCTCACCTTCAACGTTCCCACAAACGCATGAATATCCTTTTGTG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCGGTTCCCGATGCGACTACCGTATTCGCCCAGAGTACATTCTCAACGTTCAGCGAGCCATCTTGGACACTATCGTCGACGGTGATCTGCATAAAATTCAAGGTTTCTGGTTTCCATAGATATGAGAATTTTGAAAAATCCACAAGTTACAATTTTTAGACTCTTCAAAGTTTTAGATTCTGAAATTGGAATGGCCCTCACACTGCCCGTTTTGACCTAAATTATCTCGGTTACTATTAGAGATATCAAAAGTGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACATTTTATCAGTTGACAACTTTTTGATATCTCTGATAGGAACTGAGATAAATTGGCTCAAAAATCAAAGTTAGGGGGCCCTTCTATTACAGGTTTTCAGGTATTTTAGGAAAAGTTTTTTTTTCCAAATTTTTGGAATGTTGGATGTTCTGGAATTCTTCGATTTCTAGATTCCAAAATTCTACAAATCTGAAAATTTCGATTTTTCTTAAAAATCCTCACCTTCAACGTTCCCACAAACGCATGAATATCCTTTTGTGGCTTCTCCGCATAGACCTCACAATTCAACTCCATAATATCAGCTTCGTTAGGCAAGTGCTGGGTGTACGGTACCGGTATCCGCAGCTTCCAATCCGTCTCACCGTCGAGTTGGTCCGTTCGAATGAAGCATGCGCCCGACTTGTCCGTTGTTCGCAGCAGCACGACGTCGGCAGGCACACGACGGTCTTTGTGCATTATGATGACGTCACCGACCTGGAAAATGATAATTTTGAAGGGATTGGAATTCTAAAAAAGGCCATTTGACTATGAAAAATGTTTTTCGAGGGGAAAAGTCATATAACGGACCTAAAAATGCCAAAAATGGGCCCAAATTGAGCTAAAAACCGGTCCAAAACGGACCATACTCTATTTCCTTCTAGGTTCAACATTTCGGAACCATCTAAATTAGATATGATAGAAAAACTCAAGACTACAAAATGATACTAATT</canonical>
            <polymorphic>GGCGGTTCCCGATGCGACTACCGTATTCGCCCAGAGTACATTCTCAACGTTCAGCGAGCCATCTTGGACACTATCGTCGACGGTGATCTGCATAAAATTCAAGGTTTCTGGTTTCCATAGATATGAGAATTTTGAAAAATCCACAAGTTACAATTTTTAGACTCTTCAAAGTTTTAGATTCTGAAATTGGAATGGCCCTCACACTGCCCGTTTTGACCTAAATTATCTCGGTTACTATTAGAGATATCAAAAGTGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACATTTTATCAGTTGACAACTTTTTGATATCTCTGATAGGAACTGAGATAAATTGGCTCAAAAATCAAAGTTAGGGGGCCCTTCTATTACAGGTTTTCAGGTATTTTAGGAAAAGTTTTTTTTTCCAAATTTTTGGAATGTTGGATGTTCTGGAATTCTTCGATTTCTAGATTCCAAAATTCTACAAATCTGAAAATTTCGATTTTTCTKAAAAATCCTCACCTTCAACGTTCCCACAAACGCATGAATATCCTTTTGTGGCTTCTCCGCATAGACCTCACAATTCAACTCCATAATATCAGCTTCGTTAGGCAAGTGCTGGGTGTACGGTACCGGTATCCGCAGCTTCCAATCCGTCTCACCGTCGAGTTGGTCCGTTCGAATGAAGCATGCGCCCGACTTGTCCGTTGTTCGCAGCAGCACGACGTCGGCAGGCACACGACGGTCTTTGTGCATTATGATGACGTCACCGACCTGGAAAATGATAATTTTGAAGGGATTGGAATTCTAAAAAAGGCCATTTGACTATGAAAAATGTTTTTCGAGGGGAAAAGTCATATAACGGACCTAAAAATGCCAAAAATGGGCCCAAATTGAGCTAAAAACCGGTCCAAAACGGACCATACTCTATTTCCTTCTAGGTTCAACATTTCGGAACCATCTAAATTAGATATGATAGAAAAACTCAAGACTACAAAATGATACTAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTTTGGAATGTTGGATGT</pcr_primer_p1>
		<pcr_primer_p2>TAACGAAGCTGATATTATGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>183</pcr_amplicon_size>
		<canonical_amplicon>AATTTTTGGAATGTTGGATGTTCTGGAATTCTTCGATTTCTAGATTCCAAAATTCTACAAATCTGAAAATTTCGATTTTTCTTAAAAATCCTCACCTTCAACGTTCCCACAAACGCATGAATATCCTTTTGTGGCTTCTCCGCATAGACCTCACAATTCAACTCCATAATATCAGCTTCGTTA</canonical_amplicon>
		<polymorphic_amplicon>AATTTTTGGAATGTTGGATGTTCTGGAATTCTTCGATTTCTAGATTCCAAAATTCTACAAATCTGAAAATTTCGATTTTTCTKAAAAATCCTCACCTTCAACGTTCCCACAAACGCATGAATATCCTTTTGTGGCTTCTCCGCATAGACCTCACAATTCAACTCCATAATATCAGCTTCGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2042</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>19348</contig_pos>
        <strand>+</strand>
        <context>TGAAAATTTC[A/G]ATTTTTCTKA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGAATTCTTCGATTTCTAGATTCCAAAATTCTACAAATCTGAAAATTTC</left_flank>
        <right_flank>ATTTTTCTTAAAAATCCTCACCTTCAACGTTCCCACAAACGCATGAATAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTCCGACGGCGGTTCCCGATGCGACTACCGTATTCGCCCAGAGTACATTCTCAACGTTCAGCGAGCCATCTTGGACACTATCGTCGACGGTGATCTGCATAAAATTCAAGGTTTCTGGTTTCCATAGATATGAGAATTTTGAAAAATCCACAAGTTACAATTTTTAGACTCTTCAAAGTTTTAGATTCTGAAATTGGAATGGCCCTCACACTGCCCGTTTTGACCTAAATTATCTCGGTTACTATTAGAGATATCAAAAGTGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACATTTTATCAGTTGACAACTTTTTGATATCTCTGATAGGAACTGAGATAAATTGGCTCAAAAATCAAAGTTAGGGGGCCCTTCTATTACAGGTTTTCAGGTATTTTAGGAAAAGTTTTTTTTTCCAAATTTTTGGAATGTTGGATGTTCTGGAATTCTTCGATTTCTAGATTCCAAAATTCTACAAATCTGAAAATTTCGATTTTTCTTAAAAATCCTCACCTTCAACGTTCCCACAAACGCATGAATATCCTTTTGTGGCTTCTCCGCATAGACCTCACAATTCAACTCCATAATATCAGCTTCGTTAGGCAAGTGCTGGGTGTACGGTACCGGTATCCGCAGCTTCCAATCCGTCTCACCGTCGAGTTGGTCCGTTCGAATGAAGCATGCGCCCGACTTGTCCGTTGTTCGCAGCAGCACGACGTCGGCAGGCACACGACGGTCTTTGTGCATTATGATGACGTCACCGACCTGGAAAATGATAATTTTGAAGGGATTGGAATTCTAAAAAAGGCCATTTGACTATGAAAAATGTTTTTCGAGGGGAAAAGTCATATAACGGACCTAAAAATGCCAAAAATGGGCCCAAATTGAGCTAAAAACCGGTCCAAAACGGACCATACTCTATTTCCTTCTAGGTTCAACATTTCGGAACCATCTAAATTAGATATGATAGAAAAACTCAAGACTACAAAATG</canonical>
            <polymorphic>GATTCCGACGGCGGTTCCCGATGCGACTACCGTATTCGCCCAGAGTACATTCTCAACGTTCAGCGAGCCATCTTGGACACTATCGTCGACGGTGATCTGCATAAAATTCAAGGTTTCTGGTTTCCATAGATATGAGAATTTTGAAAAATCCACAAGTTACAATTTTTAGACTCTTCAAAGTTTTAGATTCTGAAATTGGAATGGCCCTCACACTGCCCGTTTTGACCTAAATTATCTCGGTTACTATTAGAGATATCAAAAGTGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACATTTTATCAGTTGACAACTTTTTGATATCTCTGATAGGAACTGAGATAAATTGGCTCAAAAATCAAAGTTAGGGGGCCCTTCTATTACAGGTTTTCAGGTATTTTAGGAAAAGTTTTTTTTTCCAAATTTTTGGAATGTTGGATGTTCTGGAATTCTTCGATTTCTAGATTCCAAAATTCTACAAATCTGAAAATTTCRATTTTTCTTAAAAATCCTCACCTTCAACGTTCCCACAAACGCATGAATATCCTTTTGTGGCTTCTCCGCATAGACCTCACAATTCAACTCCATAATATCAGCTTCGTTAGGCAAGTGCTGGGTGTACGGTACCGGTATCCGCAGCTTCCAATCCGTCTCACCGTCGAGTTGGTCCGTTCGAATGAAGCATGCGCCCGACTTGTCCGTTGTTCGCAGCAGCACGACGTCGGCAGGCACACGACGGTCTTTGTGCATTATGATGACGTCACCGACCTGGAAAATGATAATTTTGAAGGGATTGGAATTCTAAAAAAGGCCATTTGACTATGAAAAATGTTTTTCGAGGGGAAAAGTCATATAACGGACCTAAAAATGCCAAAAATGGGCCCAAATTGAGCTAAAAACCGGTCCAAAACGGACCATACTCTATTTCCTTCTAGGTTCAACATTTCGGAACCATCTAAATTAGATATGATAGAAAAACTCAAGACTACAAAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>373 166 163 158 87 39 14</canonical_bands>
                <polymorphic_bands>373 205 163 158 87 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTTTGGAATGTTGGATGT</pcr_primer_p1>
		<pcr_primer_p2>TAACGAAGCTGATATTATGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>183</pcr_amplicon_size>
		<canonical_amplicon>AATTTTTGGAATGTTGGATGTTCTGGAATTCTTCGATTTCTAGATTCCAAAATTCTACAAATCTGAAAATTTCGATTTTTCTTAAAAATCCTCACCTTCAACGTTCCCACAAACGCATGAATATCCTTTTGTGGCTTCTCCGCATAGACCTCACAATTCAACTCCATAATATCAGCTTCGTTA</canonical_amplicon>
		<polymorphic_amplicon>AATTTTTGGAATGTTGGATGTTCTGGAATTCTTCGATTTCTAGATTCCAAAATTCTACAAATCTGAAAATTTCRATTTTTCTTAAAAATCCTCACCTTCAACGTTCCCACAAACGCATGAATATCCTTTTGTGGCTTCTCCGCATAGACCTCACAATTCAACTCCATAATATCAGCTTCGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2043</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>19332</contig_pos>
        <strand>+</strand>
        <context>CAAAATTCTA[A/C]AAATCTGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGAATGTTGGATGTTCTGGAATTCTTCGATTTCTAGATTCCAAAATTCTA</left_flank>
        <right_flank>AAATCTGAAAATTTCGATTTTTCTTAAAAATCCTCACCTTCAACGTTCCC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCAGTGTAGACGACGATTCCGACGGCGGTTCCCGATGCGACTACCGTATTCGCCCAGAGTACATTCTCAACGTTCAGCGAGCCATCTTGGACACTATCGTCGACGGTGATCTGCATAAAATTCAAGGTTTCTGGTTTCCATAGATATGAGAATTTTGAAAAATCCACAAGTTACAATTTTTAGACTCTTCAAAGTTTTAGATTCTGAAATTGGAATGGCCCTCACACTGCCCGTTTTGACCTAAATTATCTCGGTTACTATTAGAGATATCAAAAGTGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACATTTTATCAGTTGACAACTTTTTGATATCTCTGATAGGAACTGAGATAAATTGGCTCAAAAATCAAAGTTAGGGGGCCCTTCTATTACAGGTTTTCAGGTATTTTAGGAAAAGTTTTTTTTTCCAAATTTTTGGAATGTTGGATGTTCTGGAATTCTTCGATTTCTAGATTCCAAAATTCTACAAATCTGAAAATTTCGATTTTTCTTAAAAATCCTCACCTTCAACGTTCCCACAAACGCATGAATATCCTTTTGTGGCTTCTCCGCATAGACCTCACAATTCAACTCCATAATATCAGCTTCGTTAGGCAAGTGCTGGGTGTACGGTACCGGTATCCGCAGCTTCCAATCCGTCTCACCGTCGAGTTGGTCCGTTCGAATGAAGCATGCGCCCGACTTGTCCGTTGTTCGCAGCAGCACGACGTCGGCAGGCACACGACGGTCTTTGTGCATTATGATGACGTCACCGACCTGGAAAATGATAATTTTGAAGGGATTGGAATTCTAAAAAAGGCCATTTGACTATGAAAAATGTTTTTCGAGGGGAAAAGTCATATAACGGACCTAAAAATGCCAAAAATGGGCCCAAATTGAGCTAAAAACCGGTCCAAAACGGACCATACTCTATTTCCTTCTAGGTTCAACATTTCGGAACCATCTAAATTAGATATGATAGAAAAAC</canonical>
            <polymorphic>GTCCAGTGTAGACGACGATTCCGACGGCGGTTCCCGATGCGACTACCGTATTCGCCCAGAGTACATTCTCAACGTTCAGCGAGCCATCTTGGACACTATCGTCGACGGTGATCTGCATAAAATTCAAGGTTTCTGGTTTCCATAGATATGAGAATTTTGAAAAATCCACAAGTTACAATTTTTAGACTCTTCAAAGTTTTAGATTCTGAAATTGGAATGGCCCTCACACTGCCCGTTTTGACCTAAATTATCTCGGTTACTATTAGAGATATCAAAAGTGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACATTTTATCAGTTGACAACTTTTTGATATCTCTGATAGGAACTGAGATAAATTGGCTCAAAAATCAAAGTTAGGGGGCCCTTCTATTACAGGTTTTCAGGTATTTTAGGAAAAGTTTTTTTTTCCAAATTTTTGGAATGTTGGATGTTCTGGAATTCTTCGATTTCTAGATTCCAAAATTCTAMAAATCTGAAAATTTCGATTTTTCTTAAAAATCCTCACCTTCAACGTTCCCACAAACGCATGAATATCCTTTTGTGGCTTCTCCGCATAGACCTCACAATTCAACTCCATAATATCAGCTTCGTTAGGCAAGTGCTGGGTGTACGGTACCGGTATCCGCAGCTTCCAATCCGTCTCACCGTCGAGTTGGTCCGTTCGAATGAAGCATGCGCCCGACTTGTCCGTTGTTCGCAGCAGCACGACGTCGGCAGGCACACGACGGTCTTTGTGCATTATGATGACGTCACCGACCTGGAAAATGATAATTTTGAAGGGATTGGAATTCTAAAAAAGGCCATTTGACTATGAAAAATGTTTTTCGAGGGGAAAAGTCATATAACGGACCTAAAAATGCCAAAAATGGGCCCAAATTGAGCTAAAAACCGGTCCAAAACGGACCATACTCTATTTCCTTCTAGGTTCAACATTTCGGAACCATCTAAATTAGATATGATAGAAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTTGGAATGTTGGATGT</pcr_primer_p1>
		<pcr_primer_p2>TAACGAAGCTGATATTATGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>183</pcr_amplicon_size>
		<canonical_amplicon>AATTTTTGGAATGTTGGATGTTCTGGAATTCTTCGATTTCTAGATTCCAAAATTCTACAAATCTGAAAATTTCGATTTTTCTTAAAAATCCTCACCTTCAACGTTCCCACAAACGCATGAATATCCTTTTGTGGCTTCTCCGCATAGACCTCACAATTCAACTCCATAATATCAGCTTCGTTA</canonical_amplicon>
		<polymorphic_amplicon>AATTTTTGGAATGTTGGATGTTCTGGAATTCTTCGATTTCTAGATTCCAAAATTCTAMAAATCTGAAAATTTCGATTTTTCTTAAAAATCCTCACCTTCAACGTTCCCACAAACGCATGAATATCCTTTTGTGGCTTCTCCGCATAGACCTCACAATTCAACTCCATAATATCAGCTTCGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2044</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>83170</contig_pos>
        <strand>+</strand>
        <context>CGGCGGCACA[A/G]AACGATTGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCAAAACTCTGAAGAAAAAAAACGATGTGGCGCGACGACCGGCGGCACA</left_flank>
        <right_flank>AACGATTGGGGAAGAAGAGATGAAAAAGAAAGCCCCATCGGACACTCTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACAACTATCTCGACAAGATGTAATTCTGTCAAGACTTGTTTATTGTTAAATTTTCTATTATAATAAACACGGTTGTTTGTTACATTTTCTCCAAAAATCTTTTTTGTTCTGATCCTGATATACAAATCAAATGGAATAAATCGTAAAAAAAATTTTATTCGGTTCAAAAAACAAACAAGAAAGAAAAGTTAATGTTTCAGATGTTCAGGCTCATCTCCTCAGCAGTCCATTTTCCATATAGACTTGCAATTCTTTTTGATCTCCTGGAATTCAAACTGTTGACCTACCTAAAAATGCGGGCAGTTAACATTAACAACTTTGTTTTATTTTGTGATGTTGTCTTTATGCTGATCACTTGTCACTTCCCATTCTTTCTCCACTGTTTTCCTTCTTTTTTTGTCCCATTTCTTTTCCCCAACGCGGCACTCTCTCTGACTCACAGAAGTGATGCAAAACTCTGAAGAAAAAAAACGATGTGGCGCGACGACCGGCGGCACAGAACGATTGGGGAAGAAGAGATGAAAAAGAAAGCCCCATCGGACACTCTTCTCTCTCTCTCTCTCACTCACAAACACACAAAAATGTTTTTGTGAGAAAGAGAGAGAAGGAAGAGTTCTTTCAGTATTGCCCCCTGCTGCCGTCGTTTTCAATAGGTCCCCTGGCTTTCGTTTTGTTTTTATCGCCCAGGATTTTCGGAGGATTTGCGCGGTGCAAATCGGCTCATTTTGAGTGGATTTTGGCTCAAAAATAGGGCATTTTTGAAGAAAATTTTTAAGTTTTCCAGAAGTTTATGTGAGACTTCTGAAGATCCTATTTCAGGGGATTTTAAGGCGATTTTCAGTAAAACTTCGAAATTTTTTACAAAAATTGAGATATTCTTCTCGAATTCGTGTGATTTTCACATGAAATTCACCGAAAAAATCGGTGATCGCTGTCTGCGAAAATGGCGAAAAAGCGGCCGAAAAACTGATAAAAGGAGACAGAAAAATGATAGTAAAT</canonical>
            <polymorphic>GACAACTATCTCGACAAGATGTAATTCTGTCAAGACTTGTTTATTGTTAAATTTTCTATTATAATAAACACGGTTGTTTGTTACATTTTCTCCAAAAATCTTTTTTGTTCTGATCCTGATATACAAATCAAATGGAATAAATCGTAAAAAAAATTTTATTCGGTTCAAAAAACAAACAAGAAAGAAAAGTTAATGTTTCAGATGTTCAGGCTCATCTCCTCAGCAGTCCATTTTCCATATAGACTTGCAATTCTTTTTGATCTCCTGGAATTCAAACTGTTGACCTACCTAAAAATGCGGGCAGTTAACATTAACAACTTTGTTTTATTTTGTGATGTTGTCTTTATGCTGATCACTTGTCACTTCCCATTCTTTCTCCACTGTTTTCCTTCTTTTTTTGTCCCATTTCTTTTCCCCAACGCGGCACTCTCTCTGACTCACAGAAGTGATGCAAAACTCTGAAGAAAAAAAACGATGTGGCGCGACGACCGGCGGCACARAACGATTGGGGAAGAAGAGATGAAAAAGAAAGCCCCATCGGACACTCTTCTCTCTCTCTCTCTCACTCACAAACACACAAAAATGTTTTTGTGAGAAAGAGAGAGAAGGAAGAGTTCTTTCAGTATTGCCCCCTGCTGCCGTCGTTTTCAATAGGTCCCCTGGCTTTCGTTTTGTTTTTATCGCCCAGGATTTTCGGAGGATTTGCGCGGTGCAAATCGGCTCATTTTGAGTGGATTTTGGCTCAAAAATAGGGCATTTTTGAAGAAAATTTTTAAGTTTTCCAGAAGTTTATGTGAGACTTCTGAAGATCCTATTTCAGGGGATTTTAAGGCGATTTTCAGTAAAACTTCGAAATTTTTTACAAAAATTGAGATATTCTTCTCGAATTCGTGTGATTTTCACATGAAATTCACCGAAAAAATCGGTGATCGCTGTCTGCGAAAATGGCGAAAAAGCGGCCGAAAAACTGATAAAAGGAGACAGAAAAATGATAGTAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGTGATGTTGTCTTTATGC</pcr_primer_p1>
		<pcr_primer_p2>GTGTTTGTGAGTGAGAGAGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGTGATGTTGTCTTTATGCTGATCACTTGTCACTTCCCATTCTTTCTCCACTGTTTTCCTTCTTTTTTTGTCCCATTTCTTTTCCCCAACGCGGCACTCTCTCTGACTCACAGAAGTGATGCAAAACTCTGAAGAAAAAAAACGATGTGGCGCGACGACCGGCGGCACAGAACGATTGGGGAAGAAGAGATGAAAAAGAAAGCCCCATCGGACACTCTTCTCTCTCTCTCTCTCACTCACAAACAC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGTGATGTTGTCTTTATGCTGATCACTTGTCACTTCCCATTCTTTCTCCACTGTTTTCCTTCTTTTTTTGTCCCATTTCTTTTCCCCAACGCGGCACTCTCTCTGACTCACAGAAGTGATGCAAAACTCTGAAGAAAAAAAACGATGTGGCGCGACGACCGGCGGCACARAACGATTGGGGAAGAAGAGATGAAAAAGAAAGCCCCATCGGACACTCTTCTCTCTCTCTCTCTCACTCACAAACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2045</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>83202</contig_pos>
        <strand>+</strand>
        <context>GAAAAAGAAA[A/G]CCCCATCGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCGACGACCGGCGGCACAGAACGATTGGGGAAGAAGAGATGAAAAAGAAA</left_flank>
        <right_flank>CCCCATCGGACACTCTTCTCTCTCTCTCTCTCACTCACAAACACACAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGACTTGTTTATTGTTAAATTTTCTATTATAATAAACACGGTTGTTTGTTACATTTTCTCCAAAAATCTTTTTTGTTCTGATCCTGATATACAAATCAAATGGAATAAATCGTAAAAAAAATTTTATTCGGTTCAAAAAACAAACAAGAAAGAAAAGTTAATGTTTCAGATGTTCAGGCTCATCTCCTCAGCAGTCCATTTTCCATATAGACTTGCAATTCTTTTTGATCTCCTGGAATTCAAACTGTTGACCTACCTAAAAATGCGGGCAGTTAACATTAACAACTTTGTTTTATTTTGTGATGTTGTCTTTATGCTGATCACTTGTCACTTCCCATTCTTTCTCCACTGTTTTCCTTCTTTTTTTGTCCCATTTCTTTTCCCCAACGCGGCACTCTCTCTGACTCACAGAAGTGATGCAAAACTCTGAAGAAAAAAAACGATGTGGCGCGACGACCGGCGGCACAGAACGATTGGGGAAGAAGAGATGAAAAAGAAAGCCCCATCGGACACTCTTCTCTCTCTCTCTCTCACTCACAAACACACAAAAATGTTTTTGTGAGAAAGAGAGAGAAGGAAGAGTTCTTTCAGTATTGCCCCCTGCTGCCGTCGTTTTCAATAGGTCCCCTGGCTTTCGTTTTGTTTTTATCGCCCAGGATTTTCGGAGGATTTGCGCGGTGCAAATCGGCTCATTTTGAGTGGATTTTGGCTCAAAAATAGGGCATTTTTGAAGAAAATTTTTAAGTTTTCCAGAAGTTTATGTGAGACTTCTGAAGATCCTATTTCAGGGGATTTTAAGGCGATTTTCAGTAAAACTTCGAAATTTTTTACAAAAATTGAGATATTCTTCTCGAATTCGTGTGATTTTCACATGAAATTCACCGAAAAAATCGGTGATCGCTGTCTGCGAAAATGGCGAAAAAGCGGCCGAAAAACTGATAAAAGGAGACAGAAAAATGATAGTAAATTGTCATTTTGCTATTAAAAAAAGCGCTTTTTT</canonical>
            <polymorphic>AGACTTGTTTATTGTTAAATTTTCTATTATAATAAACACGGTTGTTTGTTACATTTTCTCCAAAAATCTTTTTTGTTCTGATCCTGATATACAAATCAAATGGAATAAATCGTAAAAAAAATTTTATTCGGTTCAAAAAACAAACAAGAAAGAAAAGTTAATGTTTCAGATGTTCAGGCTCATCTCCTCAGCAGTCCATTTTCCATATAGACTTGCAATTCTTTTTGATCTCCTGGAATTCAAACTGTTGACCTACCTAAAAATGCGGGCAGTTAACATTAACAACTTTGTTTTATTTTGTGATGTTGTCTTTATGCTGATCACTTGTCACTTCCCATTCTTTCTCCACTGTTTTCCTTCTTTTTTTGTCCCATTTCTTTTCCCCAACGCGGCACTCTCTCTGACTCACAGAAGTGATGCAAAACTCTGAAGAAAAAAAACGATGTGGCGCGACGACCGGCGGCACAGAACGATTGGGGAAGAAGAGATGAAAAAGAAARCCCCATCGGACACTCTTCTCTCTCTCTCTCTCACTCACAAACACACAAAAATGTTTTTGTGAGAAAGAGAGAGAAGGAAGAGTTCTTTCAGTATTGCCCCCTGCTGCCGTCGTTTTCAATAGGTCCCCTGGCTTTCGTTTTGTTTTTATCGCCCAGGATTTTCGGAGGATTTGCGCGGTGCAAATCGGCTCATTTTGAGTGGATTTTGGCTCAAAAATAGGGCATTTTTGAAGAAAATTTTTAAGTTTTCCAGAAGTTTATGTGAGACTTCTGAAGATCCTATTTCAGGGGATTTTAAGGCGATTTTCAGTAAAACTTCGAAATTTTTTACAAAAATTGAGATATTCTTCTCGAATTCGTGTGATTTTCACATGAAATTCACCGAAAAAATCGGTGATCGCTGTCTGCGAAAATGGCGAAAAAGCGGCCGAAAAACTGATAAAAGGAGACAGAAAAATGATAGTAAATTGTCATTTTGCTATTAAAAAAAGCGCTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>322 218 178 131 73 57 21</canonical_bands>
                <polymorphic_bands>453 218 178 73 57 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTCTTTATGCTGATCACTTG</pcr_primer_p1>
		<pcr_primer_p2>AACATTTTTGTGTGTTTGTGAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGTCTTTATGCTGATCACTTGTCACTTCCCATTCTTTCTCCACTGTTTTCCTTCTTTTTTTGTCCCATTTCTTTTCCCCAACGCGGCACTCTCTCTGACTCACAGAAGTGATGCAAAACTCTGAAGAAAAAAAACGATGTGGCGCGACGACCGGCGGCACAGAACGATTGGGGAAGAAGAGATGAAAAAGAAAGCCCCATCGGACACTCTTCTCTCTCTCTCTCTCACTCACAAACACACAAAAATGTT</canonical_amplicon>
		<polymorphic_amplicon>TTGTCTTTATGCTGATCACTTGTCACTTCCCATTCTTTCTCCACTGTTTTCCTTCTTTTTTTGTCCCATTTCTTTTCCCCAACGCGGCACTCTCTCTGACTCACAGAAGTGATGCAAAACTCTGAAGAAAAAAAACGATGTGGCGCGACGACCGGCGGCACAGAACGATTGGGGAAGAAGAGATGAAAAAGAAARCCCCATCGGACACTCTTCTCTCTCTCTCTCTCACTCACAAACACACAAAAATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2047</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>83453</contig_pos>
        <strand>+</strand>
        <context>TTAAGTTTTC[C/T]AGAAGTTTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGATTTTGGCTCAAAAATAGGGCATTTTTGAAGAAAATTTTTAAGTTTTC</left_flank>
        <right_flank>AGAAGTTTATGTGAGACTTCTGAAGATCCTATTTCAGGGGATTTTAAGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTACCTAAAAATGCGGGCAGTTAACATTAACAACTTTGTTTTATTTTGTGATGTTGTCTTTATGCTGATCACTTGTCACTTCCCATTCTTTCTCCACTGTTTTCCTTCTTTTTTTGTCCCATTTCTTTTCCCCAACGCGGCACTCTCTCTGACTCACAGAAGTGATGCAAAACTCTGAAGAAAAAAAACGATGTGGCGCGACGACCGGCGGCACAGAACGATTGGGGAAGAAGAGATGAAAAAGAAAGCCCCATCGGACACTCTTCTCTCTCTCTCTCTCACTCACAAACACACAAAAATGTTTTTGTGAGAAAGAGAGAGAAGGAAGAGTTCTTTCAGTATTGCCCCCTGCTGCCGTCGTTTTCAATAGGTCCCCTGGCTTTCGTTTTGTTTTTATCGCCCAGGATTTTCGGAGGATTTGCGCGGTGCAAATCGGCTCATTTTGAGTGGATTTTGGCTCAAAAATAGGGCATTTTTGAAGAAAATTTTTAAGTTTTCCAGAAGTTTATGTGAGACTTCTGAAGATCCTATTTCAGGGGATTTTAAGGCGATTTTCAGTAAAACTTCGAAATTTTTTACAAAAATTGAGATATTCTTCTCGAATTCGTGTGATTTTCACATGAAATTCACCGAAAAAATCGGTGATCGCTGTCTGCGAAAATGGCGAAAAAGCGGCCGAAAAACTGATAAAAGGAGACAGAAAAATGATAGTAAATTGTCATTTTGCTATTAAAAAAAGCGCTTTTTTATCAATTTTTAGGCCGAAATTCCCAAATTCCCCCGATTTTTCCCTATTTTTCGGCCAAAATTCACATTTTTTCAGGATTTTTCAAGATAAATTCAGAATTCTCCCGATTTTTCGGGCAAAATTCCGAATTTTCTCCGATTTTTTATCGATTTTTCGTCCGATTTTCTCGGATTTTCCGACCAAAATTTTCAAATTCCCCCGAGTTCCGTCAGATTTTTCGACCAAACTTCCGAATTTTCTCCGATTTGTTT</canonical>
            <polymorphic>CCTACCTAAAAATGCGGGCAGTTAACATTAACAACTTTGTTTTATTTTGTGATGTTGTCTTTATGCTGATCACTTGTCACTTCCCATTCTTTCTCCACTGTTTTCCTTCTTTTTTTGTCCCATTTCTTTTCCCCAACGCGGCACTCTCTCTGACTCACAGAAGTGATGCAAAACTCTGAAGAAAAAAAACGATGTGGCGCGACGACCGGCGGCACAGAACGATTGGGGAAGAAGAGATGAAAAAGAAAGCCCCATCGGACACTCTTCTCTCTCTCTCTCTCACTCACAAACACACAAAAATGTTTTTGTGAGAAAGAGAGAGAAGGAAGAGTTCTTTCAGTATTGCCCCCTGCTGCCGTCGTTTTCAATAGGTCCCCTGGCTTTCGTTTTGTTTTTATCGCCCAGGATTTTCGGAGGATTTGCGCGGTGCAAATCGGCTCATTTTGAGTGGATTTTGGCTCAAAAATAGGGCATTTTTGAAGAAAATTTTTAAGTTTTCYAGAAGTTTATGTGAGACTTCTGAAGATCCTATTTCAGGGGATTTTAAGGCGATTTTCAGTAAAACTTCGAAATTTTTTACAAAAATTGAGATATTCTTCTCGAATTCGTGTGATTTTCACATGAAATTCACCGAAAAAATCGGTGATCGCTGTCTGCGAAAATGGCGAAAAAGCGGCCGAAAAACTGATAAAAGGAGACAGAAAAATGATAGTAAATTGTCATTTTGCTATTAAAAAAAGCGCTTTTTTATCAATTTTTAGGCCGAAATTCCCAAATTCCCCCGATTTTTCCCTATTTTTCGGCCAAAATTCACATTTTTTCAGGATTTTTCAAGATAAATTCAGAATTCTCCCGATTTTTCGGGCAAAATTCCGAATTTTCTCCGATTTTTTATCGATTTTTCGTCCGATTTTCTCGGATTTTCCGACCAAAATTTTCAAATTCCCCCGAGTTCCGTCAGATTTTTCGACCAAACTTCCGAATTTTCTCCGATTTGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGAGAGAGAAGGAAGAGTTC</pcr_primer_p1>
		<pcr_primer_p2>TACTGAAAATCGCCTTAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAGAGAGAGAAGGAAGAGTTCTTTCAGTATTGCCCCCTGCTGCCGTCGTTTTCAATAGGTCCCCTGGCTTTCGTTTTGTTTTTATCGCCCAGGATTTTCGGAGGATTTGCGCGGTGCAAATCGGCTCATTTTGAGTGGATTTTGGCTCAAAAATAGGGCATTTTTGAAGAAAATTTTTAAGTTTTCCAGAAGTTTATGTGAGACTTCTGAAGATCCTATTTCAGGGGATTTTAAGGCGATTTTCAGTA</canonical_amplicon>
		<polymorphic_amplicon>GAAAGAGAGAGAAGGAAGAGTTCTTTCAGTATTGCCCCCTGCTGCCGTCGTTTTCAATAGGTCCCCTGGCTTTCGTTTTGTTTTTATCGCCCAGGATTTTCGGAGGATTTGCGCGGTGCAAATCGGCTCATTTTGAGTGGATTTTGGCTCAAAAATAGGGCATTTTTGAAGAAAATTTTTAAGTTTTCYAGAAGTTTATGTGAGACTTCTGAAGATCCTATTTCAGGGGATTTTAAGGCGATTTTCAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2048</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>85652</contig_pos>
        <strand>+</strand>
        <context>ATGGAAATTT[C/G]CAGAGCGTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGTCGACCGGAATTCGGCCTATTTGTCCTCGACCTAAAAAATGGAAATTT</left_flank>
        <right_flank>CAGAGCGTCTCGTTTCCAAGCACCCATCATCACCATGGCGTCGATTGCAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTACCAAATTTTCTCAAATCGCCTGAAACGGTTAATTTCAGATCGATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGATTTTTTTTCCCAAAATATCTCAAAATCGCTAGATTGAATTTTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAATTCCTGTGATTTGCAAATTTTTAAGCTCAAAATCAGCCAAGTGACCGGAAAATTGGAATTTTTCGGAATTTTTTTTGTTGATTTTTGTGTAATTTTTGACCCCAAACTGATCAGTAGTATCCCCTCTTATCTCTTCTTCCTCTTATCATGCTTATCACTTTGAAAAAGTTTTCAAAGAGAAAAAGAGAAAACATTTTTCAAAAATCACTTTTCTCTCTCCTCTTCCACCCCATAAATCGATTCGAAATTGGCCGTTTCTTTGTCCTTTTTTTGACCGTGGTCGACCGGAATTCGGCCTATTTGTCCTCGACCTAAAAAATGGAAATTTGCAGAGCGTCTCGTTTCCAAGCACCCATCATCACCATGGCGTCGATTGCAATGGCAGCTGCTCAAGTTCAGGATATGGTGAGGAAACATATCGAGCGAGAAATTTGAATTTTTCCCTCTTTTTTAGCGAAAAATTACGAAAAATCGGCGAAAAAAAAATCGAGTTTTAGGCATAAAACTGCTGAAATTGACTGGAAAAATTGGCATTTTTTCGCAATTTTTAGGCTAAAATTGACTGAAATTTCTAGAATTTTCTCGGCATTTTTTCTGTGTAATTCGAGGACCTCTGTGTCAACGAAAACCGACCGAGATGACCTCGTCAGTTGTCTTTTTAGAAGATGATATCGCCCCGTTTTAACAATTTTGGGGAAATAGTATGGTGAGAGACGAGACGCAGAGAGAGAGAGAGAGAGAGTTCAATGGCGTTCGGCCGCCGACTTTTGACGACGAGAGAGTGTGCGCAACGGAGAGAGTCGGCTAGAGAAGATGAGCGAGAAGTGGA</canonical>
            <polymorphic>AATTTACCAAATTTTCTCAAATCGCCTGAAACGGTTAATTTCAGATCGATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGATTTTTTTTCCCAAAATATCTCAAAATCGCTAGATTGAATTTTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAATTCCTGTGATTTGCAAATTTTTAAGCTCAAAATCAGCCAAGTGACCGGAAAATTGGAATTTTTCGGAATTTTTTTTGTTGATTTTTGTGTAATTTTTGACCCCAAACTGATCAGTAGTATCCCCTCTTATCTCTTCTTCCTCTTATCATGCTTATCACTTTGAAAAAGTTTTCAAAGAGAAAAAGAGAAAACATTTTTCAAAAATCACTTTTCTCTCTCCTCTTCCACCCCATAAATCGATTCGAAATTGGCCGTTTCTTTGTCCTTTTTTTGACCGTGGTCGACCGGAATTCGGCCTATTTGTCCTCGACCTAAAAAATGGAAATTTSCAGAGCGTCTCGTTTCCAAGCACCCATCATCACCATGGCGTCGATTGCAATGGCAGCTGCTCAAGTTCAGGATATGGTGAGGAAACATATCGAGCGAGAAATTTGAATTTTTCCCTCTTTTTTAGCGAAAAATTACGAAAAATCGGCGAAAAAAAAATCGAGTTTTAGGCATAAAACTGCTGAAATTGACTGGAAAAATTGGCATTTTTTCGCAATTTTTAGGCTAAAATTGACTGAAATTTCTAGAATTTTCTCGGCATTTTTTCTGTGTAATTCGAGGACCTCTGTGTCAACGAAAACCGACCGAGATGACCTCGTCAGTTGTCTTTTTAGAAGATGATATCGCCCCGTTTTAACAATTTTGGGGAAATAGTATGGTGAGAGACGAGACGCAGAGAGAGAGAGAGAGAGAGTTCAATGGCGTTCGGCCGCCGACTTTTGACGACGAGAGAGTGTGCGCAACGGAGAGAGTCGGCTAGAGAAGATGAGCGAGAAGTGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>453 316 184 47</canonical_bands>
                <polymorphic_bands>453 363 184</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAAAGAGAAAAAGAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>GATATGTTTCCTCACCATATCCT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAAAGAGAAAAAGAGAAAACATTTTTCAAAAATCACTTTTCTCTCTCCTCTTCCACCCCATAAATCGATTCGAAATTGGCCGTTTCTTTGTCCTTTTTTTGACCGTGGTCGACCGGAATTCGGCCTATTTGTCCTCGACCTAAAAAATGGAAATTTGCAGAGCGTCTCGTTTCCAAGCACCCATCATCACCATGGCGTCGATTGCAATGGCAGCTGCTCAAGTTCAGGATATGGTGAGGAAACATATC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAAAGAGAAAAAGAGAAAACATTTTTCAAAAATCACTTTTCTCTCTCCTCTTCCACCCCATAAATCGATTCGAAATTGGCCGTTTCTTTGTCCTTTTTTTGACCGTGGTCGACCGGAATTCGGCCTATTTGTCCTCGACCTAAAAAATGGAAATTTSCAGAGCGTCTCGTTTCCAAGCACCCATCATCACCATGGCGTCGATTGCAATGGCAGCTGCTCAAGTTCAGGATATGGTGAGGAAACATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2049</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>85601</contig_pos>
        <strand>+</strand>
        <context>TTTTTGACCG[C/T]GGTCGACCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCCATAAATCGATTCGAAATTGGCCGTTTCTTTGTCCTTTTTTTGACCG</left_flank>
        <right_flank>GGTCGACCGGAATTCGGCCTATTTGTCCTCGACCTAAAAAATGGAAATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTTGAGAAATTGAAAAAAAATATTTTGTAAAAATTCAATTTTTTTGGAATTTACCAAATTTTCTCAAATCGCCTGAAACGGTTAATTTCAGATCGATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGATTTTTTTTCCCAAAATATCTCAAAATCGCTAGATTGAATTTTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAATTCCTGTGATTTGCAAATTTTTAAGCTCAAAATCAGCCAAGTGACCGGAAAATTGGAATTTTTCGGAATTTTTTTTGTTGATTTTTGTGTAATTTTTGACCCCAAACTGATCAGTAGTATCCCCTCTTATCTCTTCTTCCTCTTATCATGCTTATCACTTTGAAAAAGTTTTCAAAGAGAAAAAGAGAAAACATTTTTCAAAAATCACTTTTCTCTCTCCTCTTCCACCCCATAAATCGATTCGAAATTGGCCGTTTCTTTGTCCTTTTTTTGACCGTGGTCGACCGGAATTCGGCCTATTTGTCCTCGACCTAAAAAATGGAAATTTGCAGAGCGTCTCGTTTCCAAGCACCCATCATCACCATGGCGTCGATTGCAATGGCAGCTGCTCAAGTTCAGGATATGGTGAGGAAACATATCGAGCGAGAAATTTGAATTTTTCCCTCTTTTTTAGCGAAAAATTACGAAAAATCGGCGAAAAAAAAATCGAGTTTTAGGCATAAAACTGCTGAAATTGACTGGAAAAATTGGCATTTTTTCGCAATTTTTAGGCTAAAATTGACTGAAATTTCTAGAATTTTCTCGGCATTTTTTCTGTGTAATTCGAGGACCTCTGTGTCAACGAAAACCGACCGAGATGACCTCGTCAGTTGTCTTTTTAGAAGATGATATCGCCCCGTTTTAACAATTTTGGGGAAATAGTATGGTGAGAGACGAGACGCAGAGAGAGAGAGAGAGAGAGTTCAATGGCGTTCGGCCGCCGACTTTTGACGACGAG</canonical>
            <polymorphic>AAATTTTGAGAAATTGAAAAAAAATATTTTGTAAAAATTCAATTTTTTTGGAATTTACCAAATTTTCTCAAATCGCCTGAAACGGTTAATTTCAGATCGATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGATTTTTTTTCCCAAAATATCTCAAAATCGCTAGATTGAATTTTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAATTCCTGTGATTTGCAAATTTTTAAGCTCAAAATCAGCCAAGTGACCGGAAAATTGGAATTTTTCGGAATTTTTTTTGTTGATTTTTGTGTAATTTTTGACCCCAAACTGATCAGTAGTATCCCCTCTTATCTCTTCTTCCTCTTATCATGCTTATCACTTTGAAAAAGTTTTCAAAGAGAAAAAGAGAAAACATTTTTCAAAAATCACTTTTCTCTCTCCTCTTCCACCCCATAAATCGATTCGAAATTGGCCGTTTCTTTGTCCTTTTTTTGACCGYGGTCGACCGGAATTCGGCCTATTTGTCCTCGACCTAAAAAATGGAAATTTGCAGAGCGTCTCGTTTCCAAGCACCCATCATCACCATGGCGTCGATTGCAATGGCAGCTGCTCAAGTTCAGGATATGGTGAGGAAACATATCGAGCGAGAAATTTGAATTTTTCCCTCTTTTTTAGCGAAAAATTACGAAAAATCGGCGAAAAAAAAATCGAGTTTTAGGCATAAAACTGCTGAAATTGACTGGAAAAATTGGCATTTTTTCGCAATTTTTAGGCTAAAATTGACTGAAATTTCTAGAATTTTCTCGGCATTTTTTCTGTGTAATTCGAGGACCTCTGTGTCAACGAAAACCGACCGAGATGACCTCGTCAGTTGTCTTTTTAGAAGATGATATCGCCCCGTTTTAACAATTTTGGGGAAATAGTATGGTGAGAGACGAGACGCAGAGAGAGAGAGAGAGAGAGTTCAATGGCGTTCGGCCGCCGACTTTTGACGACGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>502 414 84</canonical_bands>
                <polymorphic_bands>916 84</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>497 416 87</canonical_bands>
                <polymorphic_bands>584 416</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>211 191 91 72 69 68 52 50 47 46 35 20 19 19 10</canonical_bands>
                <polymorphic_bands>211 191 124 91 69 68 50 47 46 35 20 19 19 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAAAGAGAAAAAGAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>GATATGTTTCCTCACCATATCCT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAAAGAGAAAAAGAGAAAACATTTTTCAAAAATCACTTTTCTCTCTCCTCTTCCACCCCATAAATCGATTCGAAATTGGCCGTTTCTTTGTCCTTTTTTTGACCGTGGTCGACCGGAATTCGGCCTATTTGTCCTCGACCTAAAAAATGGAAATTTGCAGAGCGTCTCGTTTCCAAGCACCCATCATCACCATGGCGTCGATTGCAATGGCAGCTGCTCAAGTTCAGGATATGGTGAGGAAACATATC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAAAGAGAAAAAGAGAAAACATTTTTCAAAAATCACTTTTCTCTCTCCTCTTCCACCCCATAAATCGATTCGAAATTGGCCGTTTCTTTGTCCTTTTTTTGACCGYGGTCGACCGGAATTCGGCCTATTTGTCCTCGACCTAAAAAATGGAAATTTGCAGAGCGTCTCGTTTCCAAGCACCCATCATCACCATGGCGTCGATTGCAATGGCAGCTGCTCAAGTTCAGGATATGGTGAGGAAACATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2050</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>85346</contig_pos>
        <strand>+</strand>
        <context>GCAAATTTTT[A/C]AGCTCAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTTCTCCAAAAATCACTGATAAGAAATTCCTGTGATTTGCAAATTTTT</left_flank>
        <right_flank>AGCTCAAAATCAGCCAAGTGACCGGAAAATTGGAATTTTTCGGAATTTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGCATTTTTTGTGAAAATTTCGAAAAAATTGCTCAAATCGCTGTATTAGAGAGTCGTAAAAGATTAAAAATTGGTACAAGTATTTTGCTGGAAATTTGAAAATTTTCGAAAAAAATTTTTACATTTTTGACAGAAATTTTTTTCTAAATACAAAAAATCGGAAATTTCGAAAAATTCGAGAATTTTGCATCTTTAAGTTGTCTGGAATTTTCAATTTTAGATCGATTTTTTTGTAAAAATTCACAAAATCGGAAATTTTGAGAAATTGAAAAAAAATATTTTGTAAAAATTCAATTTTTTTGGAATTTACCAAATTTTCTCAAATCGCCTGAAACGGTTAATTTCAGATCGATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGATTTTTTTTCCCAAAATATCTCAAAATCGCTAGATTGAATTTTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAATTCCTGTGATTTGCAAATTTTTAAGCTCAAAATCAGCCAAGTGACCGGAAAATTGGAATTTTTCGGAATTTTTTTTGTTGATTTTTGTGTAATTTTTGACCCCAAACTGATCAGTAGTATCCCCTCTTATCTCTTCTTCCTCTTATCATGCTTATCACTTTGAAAAAGTTTTCAAAGAGAAAAAGAGAAAACATTTTTCAAAAATCACTTTTCTCTCTCCTCTTCCACCCCATAAATCGATTCGAAATTGGCCGTTTCTTTGTCCTTTTTTTGACCGTGGTCGACCGGAATTCGGCCTATTTGTCCTCGACCTAAAAAATGGAAATTTGCAGAGCGTCTCGTTTCCAAGCACCCATCATCACCATGGCGTCGATTGCAATGGCAGCTGCTCAAGTTCAGGATATGGTGAGGAAACATATCGAGCGAGAAATTTGAATTTTTCCCTCTTTTTTAGCGAAAAATTACGAAAAATCGGCGAAAAAAAAATCGAGTTTTAGGCATAAAACTGCTGAAATTGACTGGA</canonical>
            <polymorphic>TTTTGCATTTTTTGTGAAAATTTCGAAAAAATTGCTCAAATCGCTGTATTAGAGAGTCGTAAAAGATTAAAAATTGGTACAAGTATTTTGCTGGAAATTTGAAAATTTTCGAAAAAAATTTTTACATTTTTGACAGAAATTTTTTTCTAAATACAAAAAATCGGAAATTTCGAAAAATTCGAGAATTTTGCATCTTTAAGTTGTCTGGAATTTTCAATTTTAGATCGATTTTTTTGTAAAAATTCACAAAATCGGAAATTTTGAGAAATTGAAAAAAAATATTTTGTAAAAATTCAATTTTTTTGGAATTTACCAAATTTTCTCAAATCGCCTGAAACGGTTAATTTCAGATCGATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGATTTTTTTTCCCAAAATATCTCAAAATCGCTAGATTGAATTTTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAATTCCTGTGATTTGCAAATTTTTMAGCTCAAAATCAGCCAAGTGACCGGAAAATTGGAATTTTTCGGAATTTTTTTTGTTGATTTTTGTGTAATTTTTGACCCCAAACTGATCAGTAGTATCCCCTCTTATCTCTTCTTCCTCTTATCATGCTTATCACTTTGAAAAAGTTTTCAAAGAGAAAAAGAGAAAACATTTTTCAAAAATCACTTTTCTCTCTCCTCTTCCACCCCATAAATCGATTCGAAATTGGCCGTTTCTTTGTCCTTTTTTTGACCGTGGTCGACCGGAATTCGGCCTATTTGTCCTCGACCTAAAAAATGGAAATTTGCAGAGCGTCTCGTTTCCAAGCACCCATCATCACCATGGCGTCGATTGCAATGGCAGCTGCTCAAGTTCAGGATATGGTGAGGAAACATATCGAGCGAGAAATTTGAATTTTTCCCTCTTTTTTAGCGAAAAATTACGAAAAATCGGCGAAAAAAAAATCGAGTTTTAGGCATAAAACTGCTGAAATTGACTGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 157 145 129 67</canonical_bands>
                <polymorphic_bands>659 145 129 67</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCCCAAAATATCTCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAAAGTGATAAGCATGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCCCAAAATATCTCAAAATCGCTAGATTGAATTTTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAATTCCTGTGATTTGCAAATTTTTAAGCTCAAAATCAGCCAAGTGACCGGAAAATTGGAATTTTTCGGAATTTTTTTTGTTGATTTTTGTGTAATTTTTGACCCCAAACTGATCAGTAGTATCCCCTCTTATCTCTTCTTCCTCTTATCATGCTTATCACTTTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCCCAAAATATCTCAAAATCGCTAGATTGAATTTTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAATTCCTGTGATTTGCAAATTTTTMAGCTCAAAATCAGCCAAGTGACCGGAAAATTGGAATTTTTCGGAATTTTTTTTGTTGATTTTTGTGTAATTTTTGACCCCAAACTGATCAGTAGTATCCCCTCTTATCTCTTCTTCCTCTTATCATGCTTATCACTTTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2051</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>85326</contig_pos>
        <strand>+</strand>
        <context>ATAAGAAAKT[C/T]CTGTGATTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAATT</left_flank>
        <right_flank>CTGTGATTTGCAAATTTTTAAGCTCAAAATCAGCCAAGTGACCGGAAAAT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTCATTTTTCGCCGAAATTTTGCATTTTTTGTGAAAATTTCGAAAAAATTGCTCAAATCGCTGTATTAGAGAGTCGTAAAAGATTAAAAATTGGTACAAGTATTTTGCTGGAAATTTGAAAATTTTCGAAAAAAATTTTTACATTTTTGACAGAAATTTTTTTCTAAATACAAAAAATCGGAAATTTCGAAAAATTCGAGAATTTTGCATCTTTAAGTTGTCTGGAATTTTCAATTTTAGATCGATTTTTTTGTAAAAATTCACAAAATCGGAAATTTTGAGAAATTGAAAAAAAATATTTTGTAAAAATTCAATTTTTTTGGAATTTACCAAATTTTCTCAAATCGCCTGAAACGGTTAATTTCAGATCGATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGATTTTTTTTCCCAAAATATCTCAAAATCGCTAGATTGAATTTTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAATTCCTGTGATTTGCAAATTTTTAAGCTCAAAATCAGCCAAGTGACCGGAAAATTGGAATTTTTCGGAATTTTTTTTGTTGATTTTTGTGTAATTTTTGACCCCAAACTGATCAGTAGTATCCCCTCTTATCTCTTCTTCCTCTTATCATGCTTATCACTTTGAAAAAGTTTTCAAAGAGAAAAAGAGAAAACATTTTTCAAAAATCACTTTTCTCTCTCCTCTTCCACCCCATAAATCGATTCGAAATTGGCCGTTTCTTTGTCCTTTTTTTGACCGTGGTCGACCGGAATTCGGCCTATTTGTCCTCGACCTAAAAAATGGAAATTTGCAGAGCGTCTCGTTTCCAAGCACCCATCATCACCATGGCGTCGATTGCAATGGCAGCTGCTCAAGTTCAGGATATGGTGAGGAAACATATCGAGCGAGAAATTTGAATTTTTCCCTCTTTTTTAGCGAAAAATTACGAAAAATCGGCGAAAAAAAAATCGAGTTTTAGGCATAA</canonical>
            <polymorphic>ATTTTCATTTTTCGCCGAAATTTTGCATTTTTTGTGAAAATTTCGAAAAAATTGCTCAAATCGCTGTATTAGAGAGTCGTAAAAGATTAAAAATTGGTACAAGTATTTTGCTGGAAATTTGAAAATTTTCGAAAAAAATTTTTACATTTTTGACAGAAATTTTTTTCTAAATACAAAAAATCGGAAATTTCGAAAAATTCGAGAATTTTGCATCTTTAAGTTGTCTGGAATTTTCAATTTTAGATCGATTTTTTTGTAAAAATTCACAAAATCGGAAATTTTGAGAAATTGAAAAAAAATATTTTGTAAAAATTCAATTTTTTTGGAATTTACCAAATTTTCTCAAATCGCCTGAAACGGTTAATTTCAGATCGATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGATTTTTTTTCCCAAAATATCTCAAAATCGCTAGATTGAATTTTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAATTYCTGTGATTTGCAAATTTTTAAGCTCAAAATCAGCCAAGTGACCGGAAAATTGGAATTTTTCGGAATTTTTTTTGTTGATTTTTGTGTAATTTTTGACCCCAAACTGATCAGTAGTATCCCCTCTTATCTCTTCTTCCTCTTATCATGCTTATCACTTTGAAAAAGTTTTCAAAGAGAAAAAGAGAAAACATTTTTCAAAAATCACTTTTCTCTCTCCTCTTCCACCCCATAAATCGATTCGAAATTGGCCGTTTCTTTGTCCTTTTTTTGACCGTGGTCGACCGGAATTCGGCCTATTTGTCCTCGACCTAAAAAATGGAAATTTGCAGAGCGTCTCGTTTCCAAGCACCCATCATCACCATGGCGTCGATTGCAATGGCAGCTGCTCAAGTTCAGGATATGGTGAGGAAACATATCGAGCGAGAAATTTGAATTTTTCCCTCTTTTTTAGCGAAAAATTACGAAAAATCGGCGAAAAAAAAATCGAGTTTTAGGCATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>222 105 77 69 49 47 41 35 34 32 28 26 25 21 20 18 17 17 16 16 13 11 10 10 10 9 8 8 6</canonical_bands>
                <polymorphic_bands>222 105 77 69 49 47 43 41 35 34 32 28 25 21 20 18 17 16 16 13 11 10 10 10 9 8 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCCCAAAATATCTCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAAAGTGATAAGCATGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCCCAAAATATCTCAAAATCGCTAGATTGAATTTTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAATTCCTGTGATTTGCAAATTTTTAAGCTCAAAATCAGCCAAGTGACCGGAAAATTGGAATTTTTCGGAATTTTTTTTGTTGATTTTTGTGTAATTTTTGACCCCAAACTGATCAGTAGTATCCCCTCTTATCTCTTCTTCCTCTTATCATGCTTATCACTTTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCCCAAAATATCTCAAAATCGCTAGATTGAATTTTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAATTYCTGTGATTTGCAAATTTTTAAGCTCAAAATCAGCCAAGTGACCGGAAAATTGGAATTTTTCGGAATTTTTTTTGTTGATTTTTGTGTAATTTTTGACCCCAAACTGATCAGTAGTATCCCCTCTTATCTCTTCTTCCTCTTATCATGCTTATCACTTTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2052</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>85324</contig_pos>
        <strand>+</strand>
        <context>TGATAAGAAA[G/T]TYCTGTGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAATTTTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAA</left_flank>
        <right_flank>TCCTGTGATTTGCAAATTTTTAAGCTCAAAATCAGCCAAGTGACCGGAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTTTCATTTTTCGCCGAAATTTTGCATTTTTTGTGAAAATTTCGAAAAAATTGCTCAAATCGCTGTATTAGAGAGTCGTAAAAGATTAAAAATTGGTACAAGTATTTTGCTGGAAATTTGAAAATTTTCGAAAAAAATTTTTACATTTTTGACAGAAATTTTTTTCTAAATACAAAAAATCGGAAATTTCGAAAAATTCGAGAATTTTGCATCTTTAAGTTGTCTGGAATTTTCAATTTTAGATCGATTTTTTTGTAAAAATTCACAAAATCGGAAATTTTGAGAAATTGAAAAAAAATATTTTGTAAAAATTCAATTTTTTTGGAATTTACCAAATTTTCTCAAATCGCCTGAAACGGTTAATTTCAGATCGATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGATTTTTTTTCCCAAAATATCTCAAAATCGCTAGATTGAATTTTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAATTCCTGTGATTTGCAAATTTTTAAGCTCAAAATCAGCCAAGTGACCGGAAAATTGGAATTTTTCGGAATTTTTTTTGTTGATTTTTGTGTAATTTTTGACCCCAAACTGATCAGTAGTATCCCCTCTTATCTCTTCTTCCTCTTATCATGCTTATCACTTTGAAAAAGTTTTCAAAGAGAAAAAGAGAAAACATTTTTCAAAAATCACTTTTCTCTCTCCTCTTCCACCCCATAAATCGATTCGAAATTGGCCGTTTCTTTGTCCTTTTTTTGACCGTGGTCGACCGGAATTCGGCCTATTTGTCCTCGACCTAAAAAATGGAAATTTGCAGAGCGTCTCGTTTCCAAGCACCCATCATCACCATGGCGTCGATTGCAATGGCAGCTGCTCAAGTTCAGGATATGGTGAGGAAACATATCGAGCGAGAAATTTGAATTTTTCCCTCTTTTTTAGCGAAAAATTACGAAAAATCGGCGAAAAAAAAATCGAGTTTTAGGCAT</canonical>
            <polymorphic>GAATTTTCATTTTTCGCCGAAATTTTGCATTTTTTGTGAAAATTTCGAAAAAATTGCTCAAATCGCTGTATTAGAGAGTCGTAAAAGATTAAAAATTGGTACAAGTATTTTGCTGGAAATTTGAAAATTTTCGAAAAAAATTTTTACATTTTTGACAGAAATTTTTTTCTAAATACAAAAAATCGGAAATTTCGAAAAATTCGAGAATTTTGCATCTTTAAGTTGTCTGGAATTTTCAATTTTAGATCGATTTTTTTGTAAAAATTCACAAAATCGGAAATTTTGAGAAATTGAAAAAAAATATTTTGTAAAAATTCAATTTTTTTGGAATTTACCAAATTTTCTCAAATCGCCTGAAACGGTTAATTTCAGATCGATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGATTTTTTTTCCCAAAATATCTCAAAATCGCTAGATTGAATTTTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAAKTCCTGTGATTTGCAAATTTTTAAGCTCAAAATCAGCCAAGTGACCGGAAAATTGGAATTTTTCGGAATTTTTTTTGTTGATTTTTGTGTAATTTTTGACCCCAAACTGATCAGTAGTATCCCCTCTTATCTCTTCTTCCTCTTATCATGCTTATCACTTTGAAAAAGTTTTCAAAGAGAAAAAGAGAAAACATTTTTCAAAAATCACTTTTCTCTCTCCTCTTCCACCCCATAAATCGATTCGAAATTGGCCGTTTCTTTGTCCTTTTTTTGACCGTGGTCGACCGGAATTCGGCCTATTTGTCCTCGACCTAAAAAATGGAAATTTGCAGAGCGTCTCGTTTCCAAGCACCCATCATCACCATGGCGTCGATTGCAATGGCAGCTGCTCAAGTTCAGGATATGGTGAGGAAACATATCGAGCGAGAAATTTGAATTTTTCCCTCTTTTTTAGCGAAAAATTACGAAAAATCGGCGAAAAAAAAATCGAGTTTTAGGCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>222 105 77 67 49 47 41 35 34 32 28 26 25 21 20 19 17 17 16 16 13 11 10 10 10 9 8 8 6 1</canonical_bands>
                <polymorphic_bands>222 105 77 67 49 47 43 41 35 34 32 28 25 21 20 19 17 16 16 13 11 10 10 10 9 8 8 6 1</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>155 105 47 43 42 42 35 35 28 27 26 25 25 25 24 24 24 22 21 20 19 17 17 16 13 11 11 11 10 10 10 10 9 8 8 7 6 6 5 1</canonical_bands>
                <polymorphic_bands>155 105 47 43 43 42 42 35 35 28 27 25 25 25 24 24 24 22 21 20 19 17 16 13 11 11 11 10 10 10 10 9 8 8 7 6 6 5 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCCCAAAATATCTCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAAAGTGATAAGCATGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCCCAAAATATCTCAAAATCGCTAGATTGAATTTTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAATTCCTGTGATTTGCAAATTTTTAAGCTCAAAATCAGCCAAGTGACCGGAAAATTGGAATTTTTCGGAATTTTTTTTGTTGATTTTTGTGTAATTTTTGACCCCAAACTGATCAGTAGTATCCCCTCTTATCTCTTCTTCCTCTTATCATGCTTATCACTTTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCCCAAAATATCTCAAAATCGCTAGATTGAATTTTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAAKTCCTGTGATTTGCAAATTTTTAAGCTCAAAATCAGCCAAGTGACCGGAAAATTGGAATTTTTCGGAATTTTTTTTGTTGATTTTTGTGTAATTTTTGACCCCAAACTGATCAGTAGTATCCCCTCTTATCTCTTCTTCCTCTTATCATGCTTATCACTTTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2053</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>85279</contig_pos>
        <strand></strand>
        <context>AGATTGAATT[T/C]TCGAAAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTTTTCGGATTTTTTTTCCCAAAATATCTCAAAATCGCTAGATTGAATT</left_flank>
        <right_flank>TCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAATTCCTG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATTCGAAAGCAAATCTGAAAATGCGCCAAATGCGCTCCAATGAGAATTTTCATTTTTCGCCGAAATTTTGCATTTTTTGTGAAAATTTCGAAAAAATTGCTCAAATCGCTGTATTAGAGAGTCGTAAAAGATTAAAAATTGGTACAAGTATTTTGCTGGAAATTTGAAAATTTTCGAAAAAAATTTTTACATTTTTGACAGAAATTTTTTTCTAAATACAAAAAATCGGAAATTTCGAAAAATTCGAGAATTTTGCATCTTTAAGTTGTCTGGAATTTTCAATTTTAGATCGATTTTTTTGTAAAAATTCACAAAATCGGAAATTTTGAGAAATTGAAAAAAAATATTTTGTAAAAATTCAATTTTTTTGGAATTTACCAAATTTTCTCAAATCGCCTGAAACGGTTAATTTCAGATCGATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGATTTTTTTTCCCAAAATATCTCAAAATCGCTAGATTGAATTTTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAATTCCTGTGATTTGCAAATTTTTAAGCTCAAAATCAGCCAAGTGACCGGAAAATTGGAATTTTTCGGAATTTTTTTTGTTGATTTTTGTGTAATTTTTGACCCCAAACTGATCAGTAGTATCCCCTCTTATCTCTTCTTCCTCTTATCATGCTTATCACTTTGAAAAAGTTTTCAAAGAGAAAAAGAGAAAACATTTTTCAAAAATCACTTTTCTCTCTCCTCTTCCACCCCATAAATCGATTCGAAATTGGCCGTTTCTTTGTCCTTTTTTTGACCGTGGTCGACCGGAATTCGGCCTATTTGTCCTCGACCTAAAAAATGGAAATTTGCAGAGCGTCTCGTTTCCAAGCACCCATCATCACCATGGCGTCGATTGCAATGGCAGCTGCTCAAGTTCAGGATATGGTGAGGAAACATATCGAGCGAGAAATTTGAATTTTTCCCTCTTTTTTAGCG</canonical>
            <polymorphic>TTATTCGAAAGCAAATCTGAAAATGCGCCAAATGCGCTCCAATGAGAATTTTCATTTTTCGCCGAAATTTTGCATTTTTTGTGAAAATTTCGAAAAAATTGCTCAAATCGCTGTATTAGAGAGTCGTAAAAGATTAAAAATTGGTACAAGTATTTTGCTGGAAATTTGAAAATTTTCGAAAAAAATTTTTACATTTTTGACAGAAATTTTTTTCTAAATACAAAAAATCGGAAATTTCGAAAAATTCGAGAATTTTGCATCTTTAAGTTGTCTGGAATTTTCAATTTTAGATCGATTTTTTTGTAAAAATTCACAAAATCGGAAATTTTGAGAAATTGAAAAAAAATATTTTGTAAAAATTCAATTTTTTTGGAATTTACCAAATTTTCTCAAATCGCCTGAAACGGTTAATTTCAGATCGATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGATTTTTTTTCCCAAAATATCTCAAAATCGCTAGATTGAATTYTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAATTCCTGTGATTTGCAAATTTTTAAGCTCAAAATCAGCCAAGTGACCGGAAAATTGGAATTTTTCGGAATTTTTTTTGTTGATTTTTGTGTAATTTTTGACCCCAAACTGATCAGTAGTATCCCCTCTTATCTCTTCTTCCTCTTATCATGCTTATCACTTTGAAAAAGTTTTCAAAGAGAAAAAGAGAAAACATTTTTCAAAAATCACTTTTCTCTCTCCTCTTCCACCCCATAAATCGATTCGAAATTGGCCGTTTCTTTGTCCTTTTTTTGACCGTGGTCGACCGGAATTCGGCCTATTTGTCCTCGACCTAAAAAATGGAAATTTGCAGAGCGTCTCGTTTCCAAGCACCCATCATCACCATGGCGTCGATTGCAATGGCAGCTGCTCAAGTTCAGGATATGGTGAGGAAACATATCGAGCGAGAAATTTGAATTTTTCCCTCTTTTTTAGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>222 105 77 49 47 46 41 35 34 32 28 26 25 22 21 20 19 17 17 16 16 13 11 10 10 10 9 8 8 6</canonical_bands>
                <polymorphic_bands>222 105 77 57 49 46 41 35 34 32 28 26 25 22 21 20 19 17 17 16 16 13 11 10 10 9 8 8 6</polymorphic_bands>
            </assay>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>285 214 190 86 85 74 61 5</canonical_bands>
                <polymorphic_bands>359 214 190 86 85 61 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGAATTTACCAAATTTTCTC</pcr_primer_p1>
		<pcr_primer_p2>GTCACTTGGCTGATTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>220</pcr_amplicon_size>
		<canonical_amplicon>TTGGAATTTACCAAATTTTCTCAAATCGCCTGAAACGGTTAATTTCAGATCGATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGATTTTTTTTCCCAAAATATCTCAAAATCGCTAGATTGAATTTTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAATTCCTGTGATTTGCAAATTTTTAAGCTCAAAATCAGCCAAGTGAC</canonical_amplicon>
		<polymorphic_amplicon>TTGGAATTTACCAAATTTTCTCAAATCGCCTGAAACGGTTAATTTCAGATCGATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGATTTTTTTTCCCAAAATATCTCAAAATCGCTAGATTGAATTYTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAATTCCTGTGATTTGCAAATTTTTAAGCTCAAAATCAGCCAAGTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2079</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>155825</contig_pos>
        <strand></strand>
        <context>GGGGGCTTCT[C/T]TTTTTTCCCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCGTGAAAGCCCCCCCCCCCCTTCGTTTTGGTTTTGTATGGGGGCTTCT</left_flank>
        <right_flank>TTTTTTCCCGCGGGACCCCCTCCCGAATTTTGAGAAGAAGGAGAGCACAT</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTTTTCTGAAAGTCGAAAAAACCCTCTGTAACATCTACAGTAACCTCAAAATACCCTCAGAAAATGCAATCGCGCTCTAATGCCAACTTTTTCATGTTCTGCTATTTTCTTCAAAAAGCTATTTTTGCAAATGCGCTCTAATGCAAATCCCTTCAAACTAGACTTTGACCCCATAACATTCATAACAGCCTGTTTTCCTCCATTTTCCTGCTTTTCCAACTACTCAAAAATTTAAAATTCAAATGTTTAGTTGGAGCGGGAAGAAGCAAGGGATGGGTGGCTCTGAGTTGTTGTATGTATTTGTATGTACAAAATGCCCGGGGCCGGGTTTTTCGATGGGTCGTGAAAGCCCCCCCCCCCCTTCGTTTTGGTTTTGTATGGGGGCTTCTCTTTTTTCCCGCGGGACCCCCTCCCGAATTTTGAGAAGAAGGAGAGCACATATACATAGATACATGCACCCGGACCACCACCAGCCATCCAGTTACATTCCTTCCGGTTTTTAGACGAGATTCTGAAAAAATAAAATCCGAAGTTCTGAAATTCTGAATATCTAAAACTATGAAATTCTGAAATTTCGATATTCTGATATTCAGAAAATTCGAGTTTTTGAAAGTCTGAAATGCTGAAATTCTGAAATTCTGAAAATCTGAAATACTGAAATTCTAGAATTCTTAGTTTCTGAAATTTTAAAAATCTGAATGGATCCCTGAAACCCAAAATTCCAAACTCTTGCCTATTCGAAAATTGGATTTTTCTAGATTCTAAAAGTTCTGAAATTCAGAAATTTCATAATTTTTTTTTCTGAAAATTTTTTTTTTATTTTTCAAAATTTTAAAGATTATTAGATTCTTAGCATTGCGGTTTCTTATATTCTGAATTTCTGAAATTCT</canonical>
            <polymorphic>CTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTTTTCTGAAAGTCGAAAAAACCCTCTGTAACATCTACAGTAACCTCAAAATACCCTCAGAAAATGCAATCGCGCTCTAATGCCAACTTTTTCATGTTCTGCTATTTTCTTCAAAAAGCTATTTTTGCAAATGCGCTCTAATGCAAATCCCTTCAAACTAGACTTTGACCCCATAACATTCATAACAGCCTGTTTTCCTCCATTTTCCTGCTTTTCCAACTACTCAAAAATTTAAAATTCAAATGTTTAGTTGGAGCGGGAAGAAGCAAGGGATGGGTGGCTCTGAGTTGTTGTATGTATTTGTATGTACAAAATGCCCGGGGCCGGGTTTTTCGATGGGTCGTGAAAGCCCCCCCCCCCCTTCGTTTTGGTTTTGTATGGGGGCTTCTYTTTTTTCCCGCGGGACCCCCTCCCGAATTTTGAGAAGAAGGAGAGCACATATACATAGATACATGCACCCGGACCACCACCAGCCATCCAGTTACATTCCTTCCGGTTTTTAGACGAGATTCTGAAAAAATAAAATCCGAAGTTCTGAAATTCTGAATATCTAAAACTATGAAATTCTGAAATTTCGATATTCTGATATTCAGAAAATTCGAGTTTTTGAAAGTCTGAAATGCTGAAATTCTGAAATTCTGAAAATCTGAAATACTGAAATTCTAGAATTCTTAGTTTCTGAAATTTTAAAAATCTGAATGGATCCCTGAAACCCAAAATTCCAAACTCTTGCCTATTCGAAAATTGGATTTTTCTAGATTCTAAAAGTTCTGAAATTCAGAAATTTCATAATTTTTTTTTCTGAAAATTTTTTTTTTATTTTTCAAAATTTTAAAGATTATTAGATTCTTAGCATTGCGGTTTCTTATATTCTGAATTTCTGAAATTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCTCTGAGTTGTTGTATGTATT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAGAATCTCGTCTAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GGCTCTGAGTTGTTGTATGTATTTGTATGTACAAAATGCCCGGGGCCGGGTTTTTCGATGGGTCGTGAAAGCCCCCCCCCCCCTTCGTTTTGGTTTTGTATGGGGGCTTCTCTTTTTTCCCGCGGGACCCCCTCCCGAATTTTGAGAAGAAGGAGAGCACATATACATAGATACATGCACCCGGACCACCACCAGCCATCCAGTTACATTCCTTCCGGTTTTTAGACGAGATTCTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGCTCTGAGTTGTTGTATGTATTTGTATGTACAAAATGCCCGGGGCCGGGTTTTTCGATGGGTCGTGAAAGCCCCCCCCCCCCTTCGTTTTGGTTTTGTATGGGGGCTTCTYTTTTTTCCCGCGGGACCCCCTCCCGAATTTTGAGAAGAAGGAGAGCACATATACATAGATACATGCACCCGGACCACCACCAGCCATCCAGTTACATTCCTTCCGGTTTTTAGACGAGATTCTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2080</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>167430</contig_pos>
        <strand>+</strand>
        <context>TTCCAGAAAG[C/T]TCTAGGAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGTTGCCTCTTTTTTTGGTTCTTGGAATTTTCCTGGTTTTTCCAGAAAG</left_flank>
        <right_flank>TCTAGGAAATTTCGTTGGATTACTGTAGAACTAATGAGTTGATTTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTCTTCCAAAAATTTCCAAAAAAAAAAGGATTTTTTAATGAGTCAGAAATCAAATGATAAATGTTTCTTATCACTATAACAGTTGTTTTATCATAAGTACATATAGATAAGTCATGTGGCATTTTTTCAGAATTTCGGTGGTTGGGAAATTTTTTAAAAATTGAATTTTGGCTAGACACTCGACCATATTTTAATTTATTTAAAATTTTGAAATTCGAAATTTTTTTCAGATTCTGAATATTTTTTCCTACAGTAACCCTGTCTTTTGTTTCCGGTCTATTTCCGATGGAACTTTTTTTTGTTTTCCGTGATATTATTAGTTTTTCCCCCCGAAAACGGACAATCGGCGGGCCGCCGATTGTCGTTCCAGAAGAAAAAAAAACAAGAAAAGACAACAAATCGAATCGAATAATTCATTAGAACAAGAATAAGAAGAATTTTCTGTGTATGTTGCCTCTTTTTTTGGTTCTTGGAATTTTCCTGGTTTTTCCAGAAAGCTCTAGGAAATTTCGTTGGATTACTGTAGAACTAATGAGTTGATTTTTTTTGAAAAAATATTGACTTTTTCATTAAACTTTTTCATTACACAATTTCAGAACCCCAAATCTTAGAATCCAAAATTCCATTTTTCAAAAACAAAAACGGAAAATTCTGAAAATGGTAGAAATTTTCAATTTCTACCATTTTTCAAGTTTTCTAGACTTCTGAATGCCAAAATTTCGGATTTTTCAAATATCTGGAACGTTCAGAAATTCAGAAGGTCTGAAATTTTGAGATTCAGAAGTTCCAGGAAATTATTTTCAGCGCAATCTACCAAAAATGCTCCCCCAAAAAATTGAAAATTAGTCCCAAAAAAATAGAGCTCCTAGTCCGTGATTGAAATGACACCAACCAACCACACACATGTTTTTCTTCTTCATGGACCCTTCTTTTTCTATTTTCTTTTCTTTTTTGCCGTCACTCTGTCATGTTTTATGTGTTTGTATGTGAGAAAAGAG</canonical>
            <polymorphic>TCTTCTTCCAAAAATTTCCAAAAAAAAAAGGATTTTTTAATGAGTCAGAAATCAAATGATAAATGTTTCTTATCACTATAACAGTTGTTTTATCATAAGTACATATAGATAAGTCATGTGGCATTTTTTCAGAATTTCGGTGGTTGGGAAATTTTTTAAAAATTGAATTTTGGCTAGACACTCGACCATATTTTAATTTATTTAAAATTTTGAAATTCGAAATTTTTTTCAGATTCTGAATATTTTTTCCTACAGTAACCCTGTCTTTTGTTTCCGGTCTATTTCCGATGGAACTTTTTTTTGTTTTCCGTGATATTATTAGTTTTTCCCCCCGAAAACGGACAATCGGCGGGCCGCCGATTGTCGTTCCAGAAGAAAAAAAAACAAGAAAAGACAACAAATCGAATCGAATAATTCATTAGAACAAGAATAAGAAGAATTTTCTGTGTATGTTGCCTCTTTTTTTGGTTCTTGGAATTTTCCTGGTTTTTCCAGAAAGYTCTAGGAAATTTCGTTGGATTACTGTAGAACTAATGAGTTGATTTTTTTTGAAAAAATATTGACTTTTTCATTAAACTTTTTCATTACACAATTTCAGAACCCCAAATCTTAGAATCCAAAATTCCATTTTTCAAAAACAAAAACGGAAAATTCTGAAAATGGTAGAAATTTTCAATTTCTACCATTTTTCAAGTTTTCTAGACTTCTGAATGCCAAAATTTCGGATTTTTCAAATATCTGGAACGTTCAGAAATTCAGAAGGTCTGAAATTTTGAGATTCAGAAGTTCCAGGAAATTATTTTCAGCGCAATCTACCAAAAATGCTCCCCCAAAAAATTGAAAATTAGTCCCAAAAAAATAGAGCTCCTAGTCCGTGATTGAAATGACACCAACCAACCACACACATGTTTTTCTTCTTCATGGACCCTTCTTTTTCTATTTTCTTTTCTTTTTTGCCGTCACTCTGTCATGTTTTATGTGTTTGTATGTGAGAAAAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>499 365 136</canonical_bands>
                <polymorphic_bands>864 136</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>365 180 173 146 136</canonical_bands>
                <polymorphic_bands>511 180 173 136</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACAAGAAAAGACAACAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATGGAATTTTGGATTCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAACAAGAAAAGACAACAAATCGAATCGAATAATTCATTAGAACAAGAATAAGAAGAATTTTCTGTGTATGTTGCCTCTTTTTTTGGTTCTTGGAATTTTCCTGGTTTTTCCAGAAAGCTCTAGGAAATTTCGTTGGATTACTGTAGAACTAATGAGTTGATTTTTTTTGAAAAAATATTGACTTTTTCATTAAACTTTTTCATTACACAATTTCAGAACCCCAAATCTTAGAATCCAAAATTCCATTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAACAAGAAAAGACAACAAATCGAATCGAATAATTCATTAGAACAAGAATAAGAAGAATTTTCTGTGTATGTTGCCTCTTTTTTTGGTTCTTGGAATTTTCCTGGTTTTTCCAGAAAGYTCTAGGAAATTTCGTTGGATTACTGTAGAACTAATGAGTTGATTTTTTTTGAAAAAATATTGACTTTTTCATTAAACTTTTTCATTACACAATTTCAGAACCCCAAATCTTAGAATCCAAAATTCCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2081</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>167464</contig_pos>
        <strand>+</strand>
        <context>TGTAGAACTA[A/C]WGAGTTGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGGTTTTTCCAGAAAGCTCTAGGAAATTTCGTTGGATTACTGTAGAACTA</left_flank>
        <right_flank>TGAGTTGATTTTTTTTGAAAAAATATTGACTTTTTCATTAAACTTTTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTAATGAGTCAGAAATCAAATGATAAATGTTTCTTATCACTATAACAGTTGTTTTATCATAAGTACATATAGATAAGTCATGTGGCATTTTTTCAGAATTTCGGTGGTTGGGAAATTTTTTAAAAATTGAATTTTGGCTAGACACTCGACCATATTTTAATTTATTTAAAATTTTGAAATTCGAAATTTTTTTCAGATTCTGAATATTTTTTCCTACAGTAACCCTGTCTTTTGTTTCCGGTCTATTTCCGATGGAACTTTTTTTTGTTTTCCGTGATATTATTAGTTTTTCCCCCCGAAAACGGACAATCGGCGGGCCGCCGATTGTCGTTCCAGAAGAAAAAAAAACAAGAAAAGACAACAAATCGAATCGAATAATTCATTAGAACAAGAATAAGAAGAATTTTCTGTGTATGTTGCCTCTTTTTTTGGTTCTTGGAATTTTCCTGGTTTTTCCAGAAAGCTCTAGGAAATTTCGTTGGATTACTGTAGAACTAATGAGTTGATTTTTTTTGAAAAAATATTGACTTTTTCATTAAACTTTTTCATTACACAATTTCAGAACCCCAAATCTTAGAATCCAAAATTCCATTTTTCAAAAACAAAAACGGAAAATTCTGAAAATGGTAGAAATTTTCAATTTCTACCATTTTTCAAGTTTTCTAGACTTCTGAATGCCAAAATTTCGGATTTTTCAAATATCTGGAACGTTCAGAAATTCAGAAGGTCTGAAATTTTGAGATTCAGAAGTTCCAGGAAATTATTTTCAGCGCAATCTACCAAAAATGCTCCCCCAAAAAATTGAAAATTAGTCCCAAAAAAATAGAGCTCCTAGTCCGTGATTGAAATGACACCAACCAACCACACACATGTTTTTCTTCTTCATGGACCCTTCTTTTTCTATTTTCTTTTCTTTTTTGCCGTCACTCTGTCATGTTTTATGTGTTTGTATGTGAGAAAAGAGAAGAAACAGACAGACCTTCTTCTGGATTTTTTGT</canonical>
            <polymorphic>TTTTAATGAGTCAGAAATCAAATGATAAATGTTTCTTATCACTATAACAGTTGTTTTATCATAAGTACATATAGATAAGTCATGTGGCATTTTTTCAGAATTTCGGTGGTTGGGAAATTTTTTAAAAATTGAATTTTGGCTAGACACTCGACCATATTTTAATTTATTTAAAATTTTGAAATTCGAAATTTTTTTCAGATTCTGAATATTTTTTCCTACAGTAACCCTGTCTTTTGTTTCCGGTCTATTTCCGATGGAACTTTTTTTTGTTTTCCGTGATATTATTAGTTTTTCCCCCCGAAAACGGACAATCGGCGGGCCGCCGATTGTCGTTCCAGAAGAAAAAAAAACAAGAAAAGACAACAAATCGAATCGAATAATTCATTAGAACAAGAATAAGAAGAATTTTCTGTGTATGTTGCCTCTTTTTTTGGTTCTTGGAATTTTCCTGGTTTTTCCAGAAAGCTCTAGGAAATTTCGTTGGATTACTGTAGAACTAMTGAGTTGATTTTTTTTGAAAAAATATTGACTTTTTCATTAAACTTTTTCATTACACAATTTCAGAACCCCAAATCTTAGAATCCAAAATTCCATTTTTCAAAAACAAAAACGGAAAATTCTGAAAATGGTAGAAATTTTCAATTTCTACCATTTTTCAAGTTTTCTAGACTTCTGAATGCCAAAATTTCGGATTTTTCAAATATCTGGAACGTTCAGAAATTCAGAAGGTCTGAAATTTTGAGATTCAGAAGTTCCAGGAAATTATTTTCAGCGCAATCTACCAAAAATGCTCCCCCAAAAAATTGAAAATTAGTCCCAAAAAAATAGAGCTCCTAGTCCGTGATTGAAATGACACCAACCAACCACACACATGTTTTTCTTCTTCATGGACCCTTCTTTTTCTATTTTCTTTTCTTTTTTGCCGTCACTCTGTCATGTTTTATGTGTTTGTATGTGAGAAAAGAGAAGAAACAGACAGACCTTCTTCTGGATTTTTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACAAGAAAAGACAACAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATGGAATTTTGGATTCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAACAAGAAAAGACAACAAATCGAATCGAATAATTCATTAGAACAAGAATAAGAAGAATTTTCTGTGTATGTTGCCTCTTTTTTTGGTTCTTGGAATTTTCCTGGTTTTTCCAGAAAGCTCTAGGAAATTTCGTTGGATTACTGTAGAACTAATGAGTTGATTTTTTTTGAAAAAATATTGACTTTTTCATTAAACTTTTTCATTACACAATTTCAGAACCCCAAATCTTAGAATCCAAAATTCCATTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAACAAGAAAAGACAACAAATCGAATCGAATAATTCATTAGAACAAGAATAAGAAGAATTTTCTGTGTATGTTGCCTCTTTTTTTGGTTCTTGGAATTTTCCTGGTTTTTCCAGAAAGCTCTAGGAAATTTCGTTGGATTACTGTAGAACTAMTGAGTTGATTTTTTTTGAAAAAATATTGACTTTTTCATTAAACTTTTTCATTACACAATTTCAGAACCCCAAATCTTAGAATCCAAAATTCCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2082</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>169133</contig_pos>
        <strand></strand>
        <context>TCCCYATTTT[T/C]GGTTTTTCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTGGAATCTCTAACTTTTAGAAACTAAAAAAAGAATCATCCCAATTTT</left_flank>
        <right_flank>GGTTTTTCGGTTTTCAATTTTTTTTCAATTCTGAAAACATTCTGACATTC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGGAGCACCCTGTGGGATGCTCCAATCGTCGTCATTCCATTCGTTCTCCCTTGAAACACCCCATTTCTTCTATTTTTCCCACTTTTTCTTATCAATTTTGTCAGAGCAGGAGCACCTACGTGCTCCTGCTCTCAAGAATTTTTTTCATGTCGGAATAAAAACATTTAGGTCTGGAAAATGGTTTATTGCGATTCCTTTTGTGTTAGATCCTGGAAAAGCCGAAAATATATGAAAATCAAATTTTCCAAAGCTATGTTTTTGACTTATCTGGCAAATTCTAATATTTTCACTTTTTTTTTTAATTTTCAGAACTTTCGACTTTCCTACAGATCCTCCGAACTTTCGAGGAATTCGGGATTTTCTATTTTCTAGAATTTTTTCGGATTTTCTGAGTAATCGACTTTGAATTTCTAGGATTCGAAAAAGTTTCTTTTCAAGGTTTCAAGGTTTTGGAATCTCTAACTTTTAGAAACTAAAAAAAGAATCATCCCAATTTTTGGTTTTTCGGTTTTCAATTTTTTTTCAATTCTGAAAACATTCTGACATTCTGGAATTTCGGAAAAACTAGAGTTTCAAAATCCCAATTTCCACAGTCCCAGATTCAAAATTTTCAAATTTCGAAATTTCAGACAATTTTCCAATGATCGAATTCTGAAACTTCCGAAATCTTCTAGTATCTTGAATTCTCTAATCATTACTAATAACATTCACCCGATTCTGTATGTGCGTATGTATGTAGCGCACTTTTTCACCCATTCAAAGTCAACCGATCAAGCTGAAACCTGGTCCGATAGATCAGAATTGTGCCTTAGTTGATGCCCGAACTTTTGGTTTTTCTAAATTTTGATATTGAAGTTTTCTGAAGACGTTCCTTGGTTTCACCACACAAAACGGTGATGGGCAGAAAGGGCGATGGTACAGGGCGACCGGAGGCCAGGAGGTTCAGCCCCGAAGGGGCGTAAACCGACTGGAAGTTTGAAAATTAGGAATTCTGAAAT</canonical>
            <polymorphic>TCTGGAGCACCCTGTGGGATGCTCCAATCGTCGTCATTCCATTCGTTCTCCCTTGAAACACCCCATTTCTTCTATTTTTCCCACTTTTTCTTATCAATTTTGTCAGAGCAGGAGCACCTACGTGCTCCTGCTCTCAAGAATTTTTTTCATGTCGGAATAAAAACATTTAGGTCTGGAAAATGGTTTATTGCGATTCCTTTTGTGTTAGATCCTGGAAAAGCCGAAAATATATGAAAATCAAATTTTCCAAAGCTATGTTTTTGACTTATCTGGCAAATTCTAATATTTTCACTTTTTTTTTTAATTTTCAGAACTTTCGACTTTCCTACAGATCCTCCGAACTTTCGAGGAATTCGGGATTTTCTATTTTCTAGAATTTTTTCGGATTTTCTGAGTAATCGACTTTGAATTTCTAGGATTCGAAAAAGTTTCTTTTCAAGGTTTCAAGGTTTTGGAATCTCTAACTTTTAGAAACTAAAAAAAGAATCATCCCAATTTTYGGTTTTTCGGTTTTCAATTTTTTTTCAATTCTGAAAACATTCTGACATTCTGGAATTTCGGAAAAACTAGAGTTTCAAAATCCCAATTTCCACAGTCCCAGATTCAAAATTTTCAAATTTCGAAATTTCAGACAATTTTCCAATGATCGAATTCTGAAACTTCCGAAATCTTCTAGTATCTTGAATTCTCTAATCATTACTAATAACATTCACCCGATTCTGTATGTGCGTATGTATGTAGCGCACTTTTTCACCCATTCAAAGTCAACCGATCAAGCTGAAACCTGGTCCGATAGATCAGAATTGTGCCTTAGTTGATGCCCGAACTTTTGGTTTTTCTAAATTTTGATATTGAAGTTTTCTGAAGACGTTCCTTGGTTTCACCACACAAAACGGTGATGGGCAGAAAGGGCGATGGTACAGGGCGACCGGAGGCCAGGAGGTTCAGCCCCGAAGGGGCGTAAACCGACTGGAAGTTTGAAAATTAGGAATTCTGAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNTGG</site>
                <isoschizomers>
                    <enzyme>AccB7I</enzyme>
                    <enzyme>PflBI</enzyme>
                    <enzyme>PflMI</enzyme>
                    <enzyme>Van91I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGTTTTGGAATCTCTAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>TAGAGGAATCTGGAAGGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>588</pcr_amplicon_size>
		<canonical_amplicon>AGGTTTTGGAATCTCTAACTTTTAGAAACTAAAAAAAGAATCATCCCAATTTTTGGTTTTTCGGTTTTCAATTT</canonical_amplicon>
		<polymorphic_amplicon>AGGTTTTGGAATCTCTAACTTTTAGAAACTAAAAAAAGAATCATCCCAATTTTYGGTTTTTCGGTTTTCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2083</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>183130</contig_pos>
        <strand></strand>
        <context>cattttcttt[G/A]aatcggaatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TACAAAAAATCGCTATATTGGACCTTACGACTTCAGATTCCATTTTCTTT</left_flank>
        <right_flank>AATCGGAATTTTCGATTTTTCAAAAATTCCCGCCCAAAAAATGCCCATCT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTTAGGCAGAAACGCCTTGTTTTCCTTCCTCTGGGACACCCGCATTTTAAATTCAAAACATTGGGGTTTTTCCAAACTCCCGCGAAACGAAAATTCGGTGTCCAATAGAGCGCATTTCCATTTTCACATACAAAAAACGAAACAATTGTCAAGTAAATGGAATAAATCGTTGAAAAACCATGAAAACAAGAAAAAAAGATCCTCGGAAAAGATTAAAAAATAGTCTAAACCAGTCAAAGTGTTCCTCTTTTTTCCTTTTTGTTCTCCCCAGTTCTATAGATTCTTGTAGATCAAATTGCTTTTTAAAAAATCGATTTTTATTTTGCGGAAAAATAATACTTTATTCTGAACTATATCTAAGTTTATATATATATATCAACTTCCGAAGCTCCGAATTCCCGAAAATTTTTTAAAAAAATCGATATTCCGAATTTCGAATTTTTCGAACTACAAAAAATCGCTATATTGGACCTTACGACTTCAGATTCCATTTTCTTTGAATCGGAATTTTCGATTTTTCAAAAATTCCCGCCCAAAAAATGCCCATCTCCACACTCCTCATGGACTTATATCGTCGGAATGTTCAACTCTACGGGACCATAATGCTCAAGTGTCGCCCCTTTTATCTTTTTATCATTTTTCTGGTATTCCTACACATTTTTATTCACCCGTTGCCTGTGTTGAGACGCGTACGAAACGCGTATACATACAAGATGAAAGAATTGGATAACGACGAGATGGACCTGTTTTTTGTGTCCGCATACTACTATGGGAATGAGTATAGGTGATTTTGAAATTTGAATTCTCAGATTTTTTGATTCTTAGATTCCTAGATCCTTAGATCCTTAGATTCTTAGATCCTTAGATCCTTAGATCCGGATCTCTTAGATCATTAGATTCTAGAAATCGGAAAATTCTGAATTTTCAAAAAAATAACTGTAATAGAAGGGCCCCACACAGTCAAGTTTGAGCTCAATTATCTCGTCTCCTATAATAGAT</canonical>
            <polymorphic>GCTTAGGCAGAAACGCCTTGTTTTCCTTCCTCTGGGACACCCGCATTTTAAATTCAAAACATTGGGGTTTTTCCAAACTCCCGCGAAACGAAAATTCGGTGTCCAATAGAGCGCATTTCCATTTTCACATACAAAAAACGAAACAATTGTCAAGTAAATGGAATAAATCGTTGAAAAACCATGAAAACAAGAAAAAAAGATCCTCGGAAAAGATTAAAAAATAGTCTAAACCAGTCAAAGTGTTCCTCTTTTTTCCTTTTTGTTCTCCCCAGTTCTATAGATTCTTGTAGATCAAATTGCTTTTTAAAAAATCGATTTTTATTTTGCGGAAAAATAATACTTTATTCTGAACTATATCTAAGTTTATATATATATATCAACTTCCGAAGCTCCGAATTCCCGAAAATTTTTTAAAAAAATCGATATTCCGAATTTCGAATTTTTCGAACTACAAAAAATCGCTATATTGGACCTTACGACTTCAGATTCCATTTTCTTTRAATCGGAATTTTCGATTTTTCAAAAATTCCCGCCCAAAAAATGCCCATCTCCACACTCCTCATGGACTTATATCGTCGGAATGTTCAACTCTACGGGACCATAATGCTCAAGTGTCGCCCCTTTTATCTTTTTATCATTTTTCTGGTATTCCTACACATTTTTATTCACCCGTTGCCTGTGTTGAGACGCGTACGAAACGCGTATACATACAAGATGAAAGAATTGGATAACGACGAGATGGACCTGTTTTTTGTGTCCGCATACTACTATGGGAATGAGTATAGGTGATTTTGAAATTTGAATTCTCAGATTTTTTGATTCTTAGATTCCTAGATCCTTAGATCCTTAGATTCTTAGATCCTTAGATCCTTAGATCCGGATCTCTTAGATCATTAGATTCTAGAAATCGGAAAATTCTGAATTTTCAAAAAAATAACTGTAATAGAAGGGCCCCACACAGTCAAGTTTGAGCTCAATTATCTCGTCTCCTATAATAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>318 280 205 103 47 24 15 8</canonical_bands>
                <polymorphic_bands>333 280 205 103 47 24 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>318 280 205 103 47 24 15 8</canonical_bands>
                <polymorphic_bands>333 280 205 103 47 24 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGAAAAATAATACTTTATTCTGAAC</pcr_primer_p1>
		<pcr_primer_p2>ACATTCCGACGATATAAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>CGGAAAAATAATACTTTATTCTGAACTATATCTAAGTTTATATATATATATCAACTTCCGAAGCTCCGAATTCCCGAAAATTTTTTAAAAAAATCGATATTCCGAATTTCGAATTTTTCGAACTACAAAAAATCGCTATATTGGACCTTACGACTTCAGATTCCATTTTCTTTGAATCGGAATTTTCGATTTTTCAAAAATTCCCGCCCAAAAAATGCCCATCTCCACACTCCTCATGGACTTATATCGTCGGAATGT</canonical_amplicon>
		<polymorphic_amplicon>CGGAAAAATAATACTTTATTCTGAACTATATCTAAGTTTATATATATATATCAACTTCCGAAGCTCCGAATTCCCGAAAATTTTTTAAAAAAATCGATATTCCGAATTTCGAATTTTTCGAACTACAAAAAATCGCTATATTGGACCTTACGACTTCAGATTCCATTTTCTTTRAATCGGAATTTTCGATTTTTCAAAAATTCCCGCCCAAAAAATGCCCATCTCCACACTCCTCATGGACTTATATCGTCGGAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2084</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>184241</contig_pos>
        <strand>+</strand>
        <context>CTGCGGACAA[A/C]AAGCAACGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTCTGGTGAACAAGAATATCGCTGGGATACGGTACCTGCCTGCGGACAA</left_flank>
        <right_flank>AAGCAACGAGATTTGGTCGTGTGTACGCCGCCGATTTATAATAATGTCCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTTTTTTTGGAAATTGAGAATTATGAATTTCTAGATAACTGGAACTTTGCTTTTCCAAACTGATTGATTTCTAGGATTTTTAGATTTCTGGATTCCTGGTTTTCAGAAAGTTGGCTTTTTTTTTTAACTTCAAAGTTCTGGGATCTTTTTTAACTTCAAAGTTCGGGGATCTAAGAATCTAAGAATCCTAAGAATCCGCAGAATCTAAAAACCCCAGATCTTAACAACCCCATAATTTCAGTTTCTACGAAAACCAAGTGTCCCTAACCTTCCTAGCTCCACGAGATGCTCATTGGGACCGTCGGAAGATCATTGTCATCCGAAGCAACGGTTCGAATTCCGTTTTAGAGCCAATGAAAGTTCATCGAGCTACACCGCACAATATTTGTAAATTTGTGACCATCACGGGTACAGTAACCCTCAAGGACGATTTGATGGATTTGGAGATTCTGGTGAACAAGAATATCGCTGGGATACGGTACCTGCCTGCGGACAACAAGCAACGAGATTTGGTCGTGTGTACGCCGCCGATTTATAATAATGTCCGATGGCAGAGCATTCTTTTGATTGCTCATATTTATGCGAGGTGCGTGTGGAGTACTGTACTTTTATAGGTTTTCAGGAATTTGGCTTTCCTGGAAAGCTAGGGTCTAGATTTTCAAATGTCTTACTGTCTGGAATGTTAGGTTCCTCTGTTTTTAGATTTCAGAATATTCGGAAATCTCAATTTCAGATATTTCCGATTACTATATTCTGGAAATTCTAGAATTCCAGATTCCCGGAATTTTCAAAATCCTAGATTCCGAATTTTTGAATTTTCGAGTTTTCCAGATTCCTGAAATTCGTAATTCCGGATTTCGGAAATTCCAGATTTTTTGGGTTTTCACAACTTGGACTTCCGGAAAACCTAGACTTCTGGATTCTTCCAGATTCTCAATTTTCGGAATTTCTGAACTCCCGGATTCCTGGAATTCGAAATTCCGGATTTCGGGATCTG</canonical>
            <polymorphic>ACTTTTTTTTTGGAAATTGAGAATTATGAATTTCTAGATAACTGGAACTTTGCTTTTCCAAACTGATTGATTTCTAGGATTTTTAGATTTCTGGATTCCTGGTTTTCAGAAAGTTGGCTTTTTTTTTTAACTTCAAAGTTCTGGGATCTTTTTTAACTTCAAAGTTCGGGGATCTAAGAATCTAAGAATCCTAAGAATCCGCAGAATCTAAAAACCCCAGATCTTAACAACCCCATAATTTCAGTTTCTACGAAAACCAAGTGTCCCTAACCTTCCTAGCTCCACGAGATGCTCATTGGGACCGTCGGAAGATCATTGTCATCCGAAGCAACGGTTCGAATTCCGTTTTAGAGCCAATGAAAGTTCATCGAGCTACACCGCACAATATTTGTAAATTTGTGACCATCACGGGTACAGTAACCCTCAAGGACGATTTGATGGATTTGGAGATTCTGGTGAACAAGAATATCGCTGGGATACGGTACCTGCCTGCGGACAAMAAGCAACGAGATTTGGTCGTGTGTACGCCGCCGATTTATAATAATGTCCGATGGCAGAGCATTCTTTTGATTGCTCATATTTATGCGAGGTGCGTGTGGAGTACTGTACTTTTATAGGTTTTCAGGAATTTGGCTTTCCTGGAAAGCTAGGGTCTAGATTTTCAAATGTCTTACTGTCTGGAATGTTAGGTTCCTCTGTTTTTAGATTTCAGAATATTCGGAAATCTCAATTTCAGATATTTCCGATTACTATATTCTGGAAATTCTAGAATTCCAGATTCCCGGAATTTTCAAAATCCTAGATTCCGAATTTTTGAATTTTCGAGTTTTCCAGATTCCTGAAATTCGTAATTCCGGATTTCGGAAATTCCAGATTTTTTGGGTTTTCACAACTTGGACTTCCGGAAAACCTAGACTTCTGGATTCTTCCAGATTCTCAATTTTCGGAATTTCTGAACTCCCGGATTCCTGGAATTCGAAATTCCGGATTTCGGGATCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATATTTGTAAATTTGTGACCA</pcr_primer_p1>
		<pcr_primer_p2>CAAATTCCTGAAAACCTATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAATATTTGTAAATTTGTGACCATCACGGGTACAGTAACCCTCAAGGACGATTTGATGGATTTGGAGATTCTGGTGAACAAGAATATCGCTGGGATACGGTACCTGCCTGCGGACAACAAGCAACGAGATTTGGTCGTGTGTACGCCGCCGATTTATAATAATGTCCGATGGCAGAGCATTCTTTTGATTGCTCATATTTATGCGAGGTGCGTGTGGAGTACTGTACTTTTATAGGTTTTCAGGAATTTG</canonical_amplicon>
		<polymorphic_amplicon>CAATATTTGTAAATTTGTGACCATCACGGGTACAGTAACCCTCAAGGACGATTTGATGGATTTGGAGATTCTGGTGAACAAGAATATCGCTGGGATACGGTACCTGCCTGCGGACAAMAAGCAACGAGATTTGGTCGTGTGTACGCCGCCGATTTATAATAATGTCCGATGGCAGAGCATTCTTTTGATTGCTCATATTTATGCGAGGTGCGTGTGGAGTACTGTACTTTTATAGGTTTTCAGGAATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2085</snp_id>
        <super_contig>c000800880.Contig4</super_contig>
        <contig_pos>28202</contig_pos>
        <strand></strand>
        <context>TTGTAATATT[C/T]GATAGATAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTCTCGTTTTTTGGACTTTTACACCACAAAGACGATCATTGTAATATT</left_flank>
        <right_flank>GATAGATAACAATAAATATGTGTCAGTTGTGTCCAAAATGTTGTGTCGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATATCTGAATATCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTGAATAATTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTACTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTTTGATTTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTTTGAATATCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGATTTCCTGAATTTCTGATATTCTGAAAATCGTATTCTCTATATTCTCGTTTTTTGGACTTTTACACCACAAAGACGATCATTGTAATATTCGATAGATAACAATAAATATGTGTCAGTTGTGTCCAAAATGTTGTGTCGAATGTATTTAAAGTGTTCAACTGATAAGAGAACAATCTATAAAAAGAGGGCGAGATGAAAAACAAGTCATATCAATTAACATAATGATTCTGTTATTGTCATTTTGTCTATTACTAATTTTCTGGATTATTTCAAATTTTCGGAAAGGATCAAATTTGCCTCCCGGACCCACACCTCTTCCATTAATTGGAAATATTCATCAACTGATTTACCTGATATGGAAATTAAATGGAATTGTGCCAACATTGGATTTTTATAGAAAGGTAACATATTTTAAAAATGTGGAACTTTCTGGAAATTTCGAAGATTCCAGAAATACGGAAACGCCTATACCATTTGGCTGGGACCAATGCCCACTGTCAACATAACGGATTACGAAATGGCTCATGAGATTTTCGTTAAAAATGGGAAAAAGTGTCAGGATCGACAACTGGCGCCAGTTCTTGAGCATA</canonical>
            <polymorphic>GAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATATCTGAATATCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTGAATAATTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTACTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTTTGATTTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTTTGAATATCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGATTTCCTGAATTTCTGATATTCTGAAAATCGTATTCTCTATATTCTCGTTTTTTGGACTTTTACACCACAAAGACGATCATTGTAATATTYGATAGATAACAATAAATATGTGTCAGTTGTGTCCAAAATGTTGTGTCGAATGTATTTAAAGTGTTCAACTGATAAGAGAACAATCTATAAAAAGAGGGCGAGATGAAAAACAAGTCATATCAATTAACATAATGATTCTGTTATTGTCATTTTGTCTATTACTAATTTTCTGGATTATTTCAAATTTTCGGAAAGGATCAAATTTGCCTCCCGGACCCACACCTCTTCCATTAATTGGAAATATTCATCAACTGATTTACCTGATATGGAAATTAAATGGAATTGTGCCAACATTGGATTTTTATAGAAAGGTAACATATTTTAAAAATGTGGAACTTTCTGGAAATTTCGAAGATTCCAGAAATACGGAAACGCCTATACCATTTGGCTGGGACCAATGCCCACTGTCAACATAACGGATTACGAAATGGCTCATGAGATTTTCGTTAAAAATGGGAAAAAGTGTCAGGATCGACAACTGGCGCCAGTTCTTGAGCATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 303 123 47 27</canonical_bands>
                <polymorphic_bands>547 303 123 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGTATTCTCTATATTCTCGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATCCTTTCCGAAAATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>TCGTATTCTCTATATTCTCGTTTTTTGGACTTTTACACCACAAAGACGATCATTGTAATATTCGATAGATAACAATAAATATGTGTCAGTTGTGTCCAAAATGTTGTGTCGAATGTATTTAAAGTGTTCAACTGATAAGAGAACAATCTATAAAAAGAGGGCGAGATGAAAAACAAGTCATATCAATTAACATAATGATTCTGTTATTGTCATTTTGTCTATTACTAATTTTCTGGATTATTTCAAATTTTCGGAAAGGAT</canonical_amplicon>
		<polymorphic_amplicon>TCGTATTCTCTATATTCTCGTTTTTTGGACTTTTACACCACAAAGACGATCATTGTAATATTYGATAGATAACAATAAATATGTGTCAGTTGTGTCCAAAATGTTGTGTCGAATGTATTTAAAGTGTTCAACTGATAAGAGAACAATCTATAAAAAGAGGGCGAGATGAAAAACAAGTCATATCAATTAACATAATGATTCTGTTATTGTCATTTTGTCTATTACTAATTTTCTGGATTATTTCAAATTTTCGGAAAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2086</snp_id>
        <super_contig>c000800880.Contig4</super_contig>
        <contig_pos>28250</contig_pos>
        <strand></strand>
        <context>ATGTTGTGTC[G/A]AATGTATTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTCGATAGATAACAATAAATATGTGTCAGTTGTGTCCAAAATGTTGTGTC</left_flank>
        <right_flank>AATGTATTTAAAGTGTTCAACTGATAAGAGAACAATCTATAAAAAGAGGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTGAATAATTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTACTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTTTGATTTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTTTGAATATCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGATTTCCTGAATTTCTGATATTCTGAAAATCGTATTCTCTATATTCTCGTTTTTTGGACTTTTACACCACAAAGACGATCATTGTAATATTCGATAGATAACAATAAATATGTGTCAGTTGTGTCCAAAATGTTGTGTCGAATGTATTTAAAGTGTTCAACTGATAAGAGAACAATCTATAAAAAGAGGGCGAGATGAAAAACAAGTCATATCAATTAACATAATGATTCTGTTATTGTCATTTTGTCTATTACTAATTTTCTGGATTATTTCAAATTTTCGGAAAGGATCAAATTTGCCTCCCGGACCCACACCTCTTCCATTAATTGGAAATATTCATCAACTGATTTACCTGATATGGAAATTAAATGGAATTGTGCCAACATTGGATTTTTATAGAAAGGTAACATATTTTAAAAATGTGGAACTTTCTGGAAATTTCGAAGATTCCAGAAATACGGAAACGCCTATACCATTTGGCTGGGACCAATGCCCACTGTCAACATAACGGATTACGAAATGGCTCATGAGATTTTCGTTAAAAATGGGAAAAAGTGTCAGGATCGACAACTGGCGCCAGTTCTTGAGCATATTTCAGGTTGGAAATAGTAGACAAAAAATGAGCTAACGCACTAGAAAT</canonical>
            <polymorphic>GAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTGAATAATTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTACTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTTTGATTTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTTTGAATATCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGATTTCCTGAATTTCTGATATTCTGAAAATCGTATTCTCTATATTCTCGTTTTTTGGACTTTTACACCACAAAGACGATCATTGTAATATTCGATAGATAACAATAAATATGTGTCAGTTGTGTCCAAAATGTTGTGTCRAATGTATTTAAAGTGTTCAACTGATAAGAGAACAATCTATAAAAAGAGGGCGAGATGAAAAACAAGTCATATCAATTAACATAATGATTCTGTTATTGTCATTTTGTCTATTACTAATTTTCTGGATTATTTCAAATTTTCGGAAAGGATCAAATTTGCCTCCCGGACCCACACCTCTTCCATTAATTGGAAATATTCATCAACTGATTTACCTGATATGGAAATTAAATGGAATTGTGCCAACATTGGATTTTTATAGAAAGGTAACATATTTTAAAAATGTGGAACTTTCTGGAAATTTCGAAGATTCCAGAAATACGGAAACGCCTATACCATTTGGCTGGGACCAATGCCCACTGTCAACATAACGGATTACGAAATGGCTCATGAGATTTTCGTTAAAAATGGGAAAAAGTGTCAGGATCGACAACTGGCGCCAGTTCTTGAGCATATTTCAGGTTGGAAATAGTAGACAAAAAATGAGCTAACGCACTAGAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>452 303 123 75 47</canonical_bands>
                <polymorphic_bands>452 350 123 75</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTTTACACCACAAAGACGAT</pcr_primer_p1>
		<pcr_primer_p2>GAGGCAAATTTGATCCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACTTTTACACCACAAAGACGATCATTGTAATATTCGATAGATAACAATAAATATGTGTCAGTTGTGTCCAAAATGTTGTGTCGAATGTATTTAAAGTGTTCAACTGATAAGAGAACAATCTATAAAAAGAGGGCGAGATGAAAAACAAGTCATATCAATTAACATAATGATTCTGTTATTGTCATTTTGTCTATTACTAATTTTCTGGATTATTTCAAATTTTCGGAAAGGATCAAATTTGCCTC</canonical_amplicon>
		<polymorphic_amplicon>ACTTTTACACCACAAAGACGATCATTGTAATATTCGATAGATAACAATAAATATGTGTCAGTTGTGTCCAAAATGTTGTGTCRAATGTATTTAAAGTGTTCAACTGATAAGAGAACAATCTATAAAAAGAGGGCGAGATGAAAAACAAGTCATATCAATTAACATAATGATTCTGTTATTGTCATTTTGTCTATTACTAATTTTCTGGATTATTTCAAATTTTCGGAAAGGATCAAATTTGCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2090</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>22741</contig_pos>
        <strand></strand>
        <context>GCTTTTTTAA[A/T]CTCAATTGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGAGGAGAGAGACTTTTGGATTTTTTTTTCAAATTTCGCGCTTTTTTAA</left_flank>
        <right_flank>CTCAATTGACCACTGGGATCTTCGAATCGAAATCTATTGCTCATCCTCCG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGAGGGTAATTAGGGGAGTCGAAAATTGGTTGGTTTAGTTCCAAATAGTCGAAATTGGCTAAAAAACCAAATTTGGGTACGTTAACTTTGAGCTCTTATATCTCGATTCCTGGGTAAGATATCAAAAATGTGTGAATTGATTAAAATAGTTGATATTATGATAAACATTTTATCAGTTGACCACTTTTTGATATCTTTCAAATGAACTGAAATTTATGAGTTCAAAATTTGGGAATTCCAACTTTTAGAATCGTATTTGGTCTAAAAACTGTCAAATTTGAGCTCTTATATCTCAATTTTTGTGCAAGATATCAAAAATATGTCAACTGATAAAATATTTTTGATAATATAACAAATATTTTATCAGTTGACCACTTTTTGATATCTTTTAAAGGAACTGAGATATATGGACTGAAAGTTGACGATTTGAATGGCATTCTACTAGAGGAAGAGGAGAGAGACTTTTGGATTTTTTTTTCAAATTTCGCGCTTTTTTAAACTCAATTGACCACTGGGATCTTCGAATCGAAATCTATTGCTCATCCTCCGTTGTTTTTAGTGCCACCTGTTACTCTTTTTTCTAATTTTTACACCAATTTTACGATTCTGAGTGACCTAAGAGAACAGCAGAAAAGACAAGGCGGAGAGAGAGAGTGTGGGATTTGAGGAGACGCAGAGAGAAAGAAAGAGAGAGAGAGTACGATTTACAACTGTTTCGTCATCCCCATCTCCATTCGATATTGACCGACGACCCCACGGACTGGAGATTTTTATCTTGGAAAATCGTTTTTTTGGAATTTCGGGAGTTTTTGGTTTTTTTGAAATGTCGAAATATTCATTTTACACTGTTTTAGGCAATTTTAAACCATTTTAAACGGATTTTTGGGGGTATTTCAGAGAGTTTCTGTACCAAATTCGGGTCATTTTTGGACTATTTCGAACAATTTTTTGGCCAGATTTTGGGCCATTTTGGAACATTTATGAGCCGTCTTTAGGCCA</canonical>
            <polymorphic>GGGAGGGTAATTAGGGGAGTCGAAAATTGGTTGGTTTAGTTCCAAATAGTCGAAATTGGCTAAAAAACCAAATTTGGGTACGTTAACTTTGAGCTCTTATATCTCGATTCCTGGGTAAGATATCAAAAATGTGTGAATTGATTAAAATAGTTGATATTATGATAAACATTTTATCAGTTGACCACTTTTTGATATCTTTCAAATGAACTGAAATTTATGAGTTCAAAATTTGGGAATTCCAACTTTTAGAATCGTATTTGGTCTAAAAACTGTCAAATTTGAGCTCTTATATCTCAATTTTTGTGCAAGATATCAAAAATATGTCAACTGATAAAATATTTTTGATAATATAACAAATATTTTATCAGTTGACCACTTTTTGATATCTTTTAAAGGAACTGAGATATATGGACTGAAAGTTGACGATTTGAATGGCATTCTACTAGAGGAAGAGGAGAGAGACTTTTGGATTTTTTTTTCAAATTTCGCGCTTTTTTAAWCTCAATTGACCACTGGGATCTTCGAATCGAAATCTATTGCTCATCCTCCGTTGTTTTTAGTGCCACCTGTTACTCTTTTTTCTAATTTTTACACCAATTTTACGATTCTGAGTGACCTAAGAGAACAGCAGAAAAGACAAGGCGGAGAGAGAGAGTGTGGGATTTGAGGAGACGCAGAGAGAAAGAAAGAGAGAGAGAGTACGATTTACAACTGTTTCGTCATCCCCATCTCCATTCGATATTGACCGACGACCCCACGGACTGGAGATTTTTATCTTGGAAAATCGTTTTTTTGGAATTTCGGGAGTTTTTGGTTTTTTTGAAATGTCGAAATATTCATTTTACACTGTTTTAGGCAATTTTAAACCATTTTAAACGGATTTTTGGGGGTATTTCAGAGAGTTTCTGTACCAAATTCGGGTCATTTTTGGACTATTTCGAACAATTTTTTGGCCAGATTTTGGGCCATTTTGGAACATTTATGAGCCGTCTTTAGGCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>391 366 127 106 10</canonical_bands>
                <polymorphic_bands>472 391 127 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTCCAACTTTTAGAATCGTA</pcr_primer_p1>
		<pcr_primer_p2>ACGGAGGATGAGCAATAGAT</pcr_primer_p2>
		<pcr_amplicon_size>318</pcr_amplicon_size>
		<canonical_amplicon>GAATTCCAACTTTTAGAATCGTATTTGGTCTAAAAACTGTCAAATTTGAGCTCTTATATCTCAATTTTTGTGCAAGATATCAAAAATATGTCAACTGATAAAATATTTTTGATAATATAACAAATATTTTATCAGTTGACCACTTTTTGATATCTTTTAAAGGAACTGAGATATATGGACTGAAAGTTGACGATTTGAATGGCATTCTACTAGAGGAAGAGGAGAGAGACTTTTGGATTTTTTTTTCAAATTTCGCGCTTTTTTAAACTCAATTGACCACTGGGATCTTCGAATCGAAATCTATTGCTCATCCTCCGT</canonical_amplicon>
		<polymorphic_amplicon>GAATTCCAACTTTTAGAATCGTATTTGGTCTAAAAACTGTCAAATTTGAGCTCTTATATCTCAATTTTTGTGCAAGATATCAAAAATATGTCAACTGATAAAATATTTTTGATAATATAACAAATATTTTATCAGTTGACCACTTTTTGATATCTTTTAAAGGAACTGAGATATATGGACTGAAAGTTGACGATTTGAATGGCATTCTACTAGAGGAAGAGGAGAGAGACTTTTGGATTTTTTTTTCAAATTTCGCGCTTTTTTAAWCTCAATTGACCACTGGGATCTTCGAATCGAAATCTATTGCTCATCCTCCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2091</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>22770</contig_pos>
        <strand></strand>
        <context>TCTTCGAATC[G/A]AAATCTATTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCAAATTTCGCGCTTTTTTAAACTCAATTGACCACTGGGATCTTCGAATC</left_flank>
        <right_flank>AAATCTATTGCTCATCCTCCGTTGTTTTTAGTGCCACCTGTTACTCTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTGGTTTAGTTCCAAATAGTCGAAATTGGCTAAAAAACCAAATTTGGGTACGTTAACTTTGAGCTCTTATATCTCGATTCCTGGGTAAGATATCAAAAATGTGTGAATTGATTAAAATAGTTGATATTATGATAAACATTTTATCAGTTGACCACTTTTTGATATCTTTCAAATGAACTGAAATTTATGAGTTCAAAATTTGGGAATTCCAACTTTTAGAATCGTATTTGGTCTAAAAACTGTCAAATTTGAGCTCTTATATCTCAATTTTTGTGCAAGATATCAAAAATATGTCAACTGATAAAATATTTTTGATAATATAACAAATATTTTATCAGTTGACCACTTTTTGATATCTTTTAAAGGAACTGAGATATATGGACTGAAAGTTGACGATTTGAATGGCATTCTACTAGAGGAAGAGGAGAGAGACTTTTGGATTTTTTTTTCAAATTTCGCGCTTTTTTAAACTCAATTGACCACTGGGATCTTCGAATCGAAATCTATTGCTCATCCTCCGTTGTTTTTAGTGCCACCTGTTACTCTTTTTTCTAATTTTTACACCAATTTTACGATTCTGAGTGACCTAAGAGAACAGCAGAAAAGACAAGGCGGAGAGAGAGAGTGTGGGATTTGAGGAGACGCAGAGAGAAAGAAAGAGAGAGAGAGTACGATTTACAACTGTTTCGTCATCCCCATCTCCATTCGATATTGACCGACGACCCCACGGACTGGAGATTTTTATCTTGGAAAATCGTTTTTTTGGAATTTCGGGAGTTTTTGGTTTTTTTGAAATGTCGAAATATTCATTTTACACTGTTTTAGGCAATTTTAAACCATTTTAAACGGATTTTTGGGGGTATTTCAGAGAGTTTCTGTACCAAATTCGGGTCATTTTTGGACTATTTCGAACAATTTTTTGGCCAGATTTTGGGCCATTTTGGAACATTTATGAGCCGTCTTTAGGCCATTTTTGGACTATTTTCAGCTATTTTAAGC</canonical>
            <polymorphic>GTTGGTTTAGTTCCAAATAGTCGAAATTGGCTAAAAAACCAAATTTGGGTACGTTAACTTTGAGCTCTTATATCTCGATTCCTGGGTAAGATATCAAAAATGTGTGAATTGATTAAAATAGTTGATATTATGATAAACATTTTATCAGTTGACCACTTTTTGATATCTTTCAAATGAACTGAAATTTATGAGTTCAAAATTTGGGAATTCCAACTTTTAGAATCGTATTTGGTCTAAAAACTGTCAAATTTGAGCTCTTATATCTCAATTTTTGTGCAAGATATCAAAAATATGTCAACTGATAAAATATTTTTGATAATATAACAAATATTTTATCAGTTGACCACTTTTTGATATCTTTTAAAGGAACTGAGATATATGGACTGAAAGTTGACGATTTGAATGGCATTCTACTAGAGGAAGAGGAGAGAGACTTTTGGATTTTTTTTTCAAATTTCGCGCTTTTTTAAACTCAATTGACCACTGGGATCTTCGAATCRAAATCTATTGCTCATCCTCCGTTGTTTTTAGTGCCACCTGTTACTCTTTTTTCTAATTTTTACACCAATTTTACGATTCTGAGTGACCTAAGAGAACAGCAGAAAAGACAAGGCGGAGAGAGAGAGTGTGGGATTTGAGGAGACGCAGAGAGAAAGAAAGAGAGAGAGAGTACGATTTACAACTGTTTCGTCATCCCCATCTCCATTCGATATTGACCGACGACCCCACGGACTGGAGATTTTTATCTTGGAAAATCGTTTTTTTGGAATTTCGGGAGTTTTTGGTTTTTTTGAAATGTCGAAATATTCATTTTACACTGTTTTAGGCAATTTTAAACCATTTTAAACGGATTTTTGGGGGTATTTCAGAGAGTTTCTGTACCAAATTCGGGTCATTTTTGGACTATTTCGAACAATTTTTTGGCCAGATTTTGGGCCATTTTGGAACATTTATGAGCCGTCTTTAGGCCATTTTTGGACTATTTTCAGCTATTTTAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>418 209 110 92 90 54 22 5</canonical_bands>
                <polymorphic_bands>418 214 110 92 90 54 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAGAGAGACTTTTGGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>GACGAAACAGTTGTAAATCGTA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>GGAGAGAGACTTTTGGATTTTTTTTTCAAATTTCGCGCTTTTTTAAACTCAATTGACCACTGGGATCTTCGAATCGAAATCTATTGCTCATCCTCCGTTGTTTTTAGTGCCACCTGTTACTCTTTTTTCTAATTTTTACACCAATTTTACGATTCTGAGTGACCTAAGAGAACAGCAGAAAAGACAAGGCGGAGAGAGAGAGTGTGGGATTTGAGGAGACGCAGAGAGAAAGAAAGAGAGAGAGAGTACGATTTACAACTGTTTCGTC</canonical_amplicon>
		<polymorphic_amplicon>GGAGAGAGACTTTTGGATTTTTTTTTCAAATTTCGCGCTTTTTTAAACTCAATTGACCACTGGGATCTTCGAATCRAAATCTATTGCTCATCCTCCGTTGTTTTTAGTGCCACCTGTTACTCTTTTTTCTAATTTTTACACCAATTTTACGATTCTGAGTGACCTAAGAGAACAGCAGAAAAGACAAGGCGGAGAGAGAGAGTGTGGGATTTGAGGAGACGCAGAGAGAAAGAAAGAGAGAGAGAGTACGATTTACAACTGTTTCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2092</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>24838</contig_pos>
        <strand></strand>
        <context>CCAAAAAAAR[G/T]RTTTTTTKGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAA</left_flank>
        <right_flank>TTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTCAAGCTCTTTCAAAGCTACTTTTTAGCTAATTTTAAGGCATTTTTTAGTCATTATTGATTATTTTTGGGCTATTTTCAAGCTATTTTAAAGCCATTTCCAGTTATTTTTTGGTTATTTTTTTACTTTTAGATTATTTTCAGACTAATTTCCCCCATTTTTGGACTATTTTCCCCCTGAAAAGTTTCGAAATTCCCTACAAAATGTAAACTAAAAAATTCCCGAATCTCCCCTCCGGAACCGCCTAATTTGATGTCGTTTTTGACTCCAAAAAGCTCCCAAAAAGCTCCAATATTCTTCAGAATTTTCGAATTTTTCGACTTTCTTGTGGGATCAAAATGTTTGAAAATTCTGTGCTGTGTGTGTCTTCAGAAGACGTCGACGACGTCTTCCGGAGTATCTTCTATTTGGATTTGTGTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAA</canonical>
            <polymorphic>ATTTTCAAGCTCTTTCAAAGCTACTTTTTAGCTAATTTTAAGGCATTTTTTAGTCATTATTGATTATTTTTGGGCTATTTTCAAGCTATTTTAAAGCCATTTCCAGTTATTTTTTGGTTATTTTTTTACTTTTAGATTATTTTCAGACTAATTTCCCCCATTTTTGGACTATTTTCCCCCTGAAAAGTTTCGAAATTCCCTACAAAATGTAAACTAAAAAATTCCCGAATCTCCCCTCCGGAACCGCCTAATTTGATGTCGTTTTTGACTCCAAAAAGCTCCCAAAAAGCTCCAATATTCTTCAGAATTTTCGAATTTTTCGACTTTCTTGTGGGATCAAAATGTTTGAAAATTCTGTGCTGTGTGTGTCTTCAGAAGACGTCGACGACGTCTTCCGGAGTATCTTCTATTTGGATTTGTGTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAKTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTACTAGTCCCATGCTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>CATTTTTGTTTGTTCACTACGA</pcr_primer_p2>
		<pcr_amplicon_size>499</pcr_amplicon_size>
		<canonical_amplicon>TAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATG</canonical_amplicon>
		<polymorphic_amplicon>TAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAKTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2093</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>24837</contig_pos>
        <strand></strand>
        <context>ACCAAAAAAA[A/G]KRTTTTTTKG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAA</left_flank>
        <right_flank>GTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTCAAGCTCTTTCAAAGCTACTTTTTAGCTAATTTTAAGGCATTTTTTAGTCATTATTGATTATTTTTGGGCTATTTTCAAGCTATTTTAAAGCCATTTCCAGTTATTTTTTGGTTATTTTTTTACTTTTAGATTATTTTCAGACTAATTTCCCCCATTTTTGGACTATTTTCCCCCTGAAAAGTTTCGAAATTCCCTACAAAATGTAAACTAAAAAATTCCCGAATCTCCCCTCCGGAACCGCCTAATTTGATGTCGTTTTTGACTCCAAAAAGCTCCCAAAAAGCTCCAATATTCTTCAGAATTTTCGAATTTTTCGACTTTCTTGTGGGATCAAAATGTTTGAAAATTCTGTGCTGTGTGTGTCTTCAGAAGACGTCGACGACGTCTTCCGGAGTATCTTCTATTTGGATTTGTGTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAA</canonical>
            <polymorphic>AATTTTCAAGCTCTTTCAAAGCTACTTTTTAGCTAATTTTAAGGCATTTTTTAGTCATTATTGATTATTTTTGGGCTATTTTCAAGCTATTTTAAAGCCATTTCCAGTTATTTTTTGGTTATTTTTTTACTTTTAGATTATTTTCAGACTAATTTCCCCCATTTTTGGACTATTTTCCCCCTGAAAAGTTTCGAAATTCCCTACAAAATGTAAACTAAAAAATTCCCGAATCTCCCCTCCGGAACCGCCTAATTTGATGTCGTTTTTGACTCCAAAAAGCTCCCAAAAAGCTCCAATATTCTTCAGAATTTTCGAATTTTTCGACTTTCTTGTGGGATCAAAATGTTTGAAAATTCTGTGCTGTGTGTGTCTTCAGAAGACGTCGACGACGTCTTCCGGAGTATCTTCTATTTGGATTTGTGTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAARGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTACTAGTCCCATGCTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>CATTTTTGTTTGTTCACTACGA</pcr_primer_p2>
		<pcr_amplicon_size>499</pcr_amplicon_size>
		<canonical_amplicon>TAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATG</canonical_amplicon>
		<polymorphic_amplicon>TAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAARGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2094</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>24758</contig_pos>
        <strand>+</strand>
        <context>TTTGGATTTG[G/T]GTGACAATCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTCAGAAGACGTCGACGACGTCTTCCGGAGTATCTTCTATTTGGATTTG</left_flank>
        <right_flank>GTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGTCATTTTTAGACCCTTTTTAGCCGCTTTTGAGCCTTTGAAGATCATTTTTGAGAAATTTTTAAGCCATTTCTAGCAATTTTCAAGCTCTTTCAAAGCTACTTTTTAGCTAATTTTAAGGCATTTTTTAGTCATTATTGATTATTTTTGGGCTATTTTCAAGCTATTTTAAAGCCATTTCCAGTTATTTTTTGGTTATTTTTTTACTTTTAGATTATTTTCAGACTAATTTCCCCCATTTTTGGACTATTTTCCCCCTGAAAAGTTTCGAAATTCCCTACAAAATGTAAACTAAAAAATTCCCGAATCTCCCCTCCGGAACCGCCTAATTTGATGTCGTTTTTGACTCCAAAAAGCTCCCAAAAAGCTCCAATATTCTTCAGAATTTTCGAATTTTTCGACTTTCTTGTGGGATCAAAATGTTTGAAAATTCTGTGCTGTGTGTGTCTTCAGAAGACGTCGACGACGTCTTCCGGAGTATCTTCTATTTGGATTTGTGTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTA</canonical>
            <polymorphic>TCAGTCATTTTTAGACCCTTTTTAGCCGCTTTTGAGCCTTTGAAGATCATTTTTGAGAAATTTTTAAGCCATTTCTAGCAATTTTCAAGCTCTTTCAAAGCTACTTTTTAGCTAATTTTAAGGCATTTTTTAGTCATTATTGATTATTTTTGGGCTATTTTCAAGCTATTTTAAAGCCATTTCCAGTTATTTTTTGGTTATTTTTTTACTTTTAGATTATTTTCAGACTAATTTCCCCCATTTTTGGACTATTTTCCCCCTGAAAAGTTTCGAAATTCCCTACAAAATGTAAACTAAAAAATTCCCGAATCTCCCCTCCGGAACCGCCTAATTTGATGTCGTTTTTGACTCCAAAAAGCTCCCAAAAAGCTCCAATATTCTTCAGAATTTTCGAATTTTTCGACTTTCTTGTGGGATCAAAATGTTTGAAAATTCTGTGCTGTGTGTGTCTTCAGAAGACGTCGACGACGTCTTCCGGAGTATCTTCTATTTGGATTTGKGTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>413 182 176 53 39 30 26 22 22 17 9 5 2 2 2</canonical_bands>
                <polymorphic_bands>413 182 176 55 39 30 26 22 22 17 9 5 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGTGCTGTGTGTGTCTTC</pcr_primer_p1>
		<pcr_primer_p2>CATTTTTGTTTGTTCACTACGA</pcr_primer_p2>
		<pcr_amplicon_size>584</pcr_amplicon_size>
		<canonical_amplicon>TCTGTGCTGTGTGTGTCTTCAGAAGACGTCGACGACGTCTTCCGGAGTATCTTCTATTTGGATTTGTGTGACAATCAAATCTCGTTAG</canonical_amplicon>
		<polymorphic_amplicon>TCTGTGCTGTGTGTGTCTTCAGAAGACGTCGACGACGTCTTCCGGAGTATCTTCTATTTGGATTTGKGTGACAATCAAATCTCGTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2096</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>25236</contig_pos>
        <strand></strand>
        <context>GCCGAATGGA[T/C]TTTTGGATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGA</left_flank>
        <right_flank>TTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTATCTTCTATTTGGATTTGTGTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCC</canonical>
            <polymorphic>AGTATCTTCTATTTGGATTTGTGTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGAYTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTACTAGTCCCATGCTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>TGATTATGCTGTAGTCATTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>514</pcr_amplicon_size>
		<canonical_amplicon>TAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCA</canonical_amplicon>
		<polymorphic_amplicon>TAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGAYTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2097</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>25253</contig_pos>
        <strand>+</strand>
        <context>ATTTTYCGTA[A/G]TCGTAGTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTA</left_flank>
        <right_flank>TCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGTGTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCCCCTCTTTGTAGTATAAT</canonical>
            <polymorphic>TTTGTGTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTARTCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCCCCTCTTTGTAGTATAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTACTAGTCCCATGCTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>GGACCACACCATCTCATAATA</pcr_primer_p2>
		<pcr_amplicon_size>535</pcr_amplicon_size>
		<canonical_amplicon>TAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCC</canonical_amplicon>
		<polymorphic_amplicon>TAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTARTCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2098</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>25315</contig_pos>
        <strand>+</strand>
        <context>GTGGTCCAGG[A/G]AAAAAAGAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGG</left_flank>
        <right_flank>AAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCCCCTCTTTGTAGTATAATACATTTATACAATTTATCTCGAAAAACTTTTCCCCTCCTCATTTTTCCACATCACCGAACAT</canonical>
            <polymorphic>AAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGRAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCCCCTCTTTGTAGTATAATACATTTATACAATTTATCTCGAAAAACTTTTCCCCTCCTCATTTTTCCACATCACCGAACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>495 286 219</canonical_bands>
                <polymorphic_bands>714 286</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACAAACAAAAATGACTACAGC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGGTTTTTGTAGTTTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>GAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGRAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2099</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>25335</contig_pos>
        <strand>+</strand>
        <context>AATCAAACAT[C/T]AAAACATTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACAT</left_flank>
        <right_flank>AAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCCCCTCTTTGTAGTATAATACATTTATACAATTTATCTCGAAAAACTTTTCCCCTCCTCATTTTTCCACATCACCGAACATGACACAGACGATGGATGATC</canonical>
            <polymorphic>AAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATYAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCCCCTCTTTGTAGTATAATACATTTATACAATTTATCTCGAAAAACTTTTCCCCTCCTCATTTTTCCACATCACCGAACATGACACAGACGATGGATGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACAAACAAAAATGACTACAGC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGGTTTTTGTAGTTTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>GAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATYAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2100</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>25446</contig_pos>
        <strand>+</strand>
        <context>ATCAGTTCAA[A/C]AATTTCTATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAA</left_flank>
        <right_flank>AATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCCCCTCTTTGTAGTATAATACATTTATACAATTTATCTCGAAAAACTTTTCCCCTCCTCATTTTTCCACATCACCGAACATGACACAGACGATGGATGATCCCTATTATACTATTAGGTAGCTGTCGCTAGTTCTTCATTTTTCAGTTTTTCAGCAGATTTTCAAAATTTTGAATAGTTTGTTTTATATATGTTTGTAGCATTTTTTATGAT</canonical>
            <polymorphic>TCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAMAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCCCCTCTTTGTAGTATAATACATTTATACAATTTATCTCGAAAAACTTTTCCCCTCCTCATTTTTCCACATCACCGAACATGACACAGACGATGGATGATCCCTATTATACTATTAGGTAGCTGTCGCTAGTTCTTCATTTTTCAGTTTTTCAGCAGATTTTCAAAATTTTGAATAGTTTGTTTTATATATGTTTGTAGCATTTTTTATGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>453 189 136 67 47 43 26 20 10 9</canonical_bands>
                <polymorphic_bands>479 189 136 67 47 43 20 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAACAAACAAAAATGACTACAG</pcr_primer_p1>
		<pcr_primer_p2>GTAGTTTTTGGTTTTTGTAGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTAC</canonical_amplicon>
		<polymorphic_amplicon>TGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAMAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2101</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>25557</contig_pos>
        <strand>+</strand>
        <context>CATTTTTTGG[A/C]ACCAAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGG</left_flank>
        <right_flank>ACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCAC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCCCCTCTTTGTAGTATAATACATTTATACAATTTATCTCGAAAAACTTTTCCCCTCCTCATTTTTCCACATCACCGAACATGACACAGACGATGGATGATCCCTATTATACTATTAGGTAGCTGTCGCTAGTTCTTCATTTTTCAGTTTTTCAGCAGATTTTCAAAATTTTGAATAGTTTGTTTTATATATGTTTGTAGCATTTTTTATGATCTACATTTTCAAATTTAGATAATTCAAAAATGGTGAATTTGAAGGAAGTTACAAACCAAAACGTATCAGTGATCTCTTTTTTTTCCATTCTGGTGCATTTTAGGTTATATT</canonical>
            <polymorphic>TGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGMACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCCCCTCTTTGTAGTATAATACATTTATACAATTTATCTCGAAAAACTTTTCCCCTCCTCATTTTTCCACATCACCGAACATGACACAGACGATGGATGATCCCTATTATACTATTAGGTAGCTGTCGCTAGTTCTTCATTTTTCAGTTTTTCAGCAGATTTTCAAAATTTTGAATAGTTTGTTTTATATATGTTTGTAGCATTTTTTATGATCTACATTTTCAAATTTAGATAATTCAAAAATGGTGAATTTGAAGGAAGTTACAAACCAAAACGTATCAGTGATCTCTTTTTTTTCCATTCTGGTGCATTTTAGGTTATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTACAGTAATCCAGAACACCTG</pcr_primer_p1>
		<pcr_primer_p2>ACTACAAAGAGGGGAGAAGATAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCCCCTCTTTGTAGT</canonical_amplicon>
		<polymorphic_amplicon>ACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGMACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCCCCTCTTTGTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2102</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>25578</contig_pos>
        <strand>+</strand>
        <context>GTTCCATGCC[A/T]TTTYCCKGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCC</left_flank>
        <right_flank>TTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCCCCTCTTTGTAGTATAATACATTTATACAATTTATCTCGAAAAACTTTTCCCCTCCTCATTTTTCCACATCACCGAACATGACACAGACGATGGATGATCCCTATTATACTATTAGGTAGCTGTCGCTAGTTCTTCATTTTTCAGTTTTTCAGCAGATTTTCAAAATTTTGAATAGTTTGTTTTATATATGTTTGTAGCATTTTTTATGATCTACATTTTCAAATTTAGATAATTCAAAAATGGTGAATTTGAAGGAAGTTACAAACCAAAACGTATCAGTGATCTCTTTTTTTTCCATTCTGGTGCATTTTAGGTTATATTTACTGATGGGCTATTAGAACA</canonical>
            <polymorphic>TGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCWTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCCCCTCTTTGTAGTATAATACATTTATACAATTTATCTCGAAAAACTTTTCCCCTCCTCATTTTTCCACATCACCGAACATGACACAGACGATGGATGATCCCTATTATACTATTAGGTAGCTGTCGCTAGTTCTTCATTTTTCAGTTTTTCAGCAGATTTTCAAAATTTTGAATAGTTTGTTTTATATATGTTTGTAGCATTTTTTATGATCTACATTTTCAAATTTAGATAATTCAAAAATGGTGAATTTGAAGGAAGTTACAAACCAAAACGTATCAGTGATCTCTTTTTTTTCCATTCTGGTGCATTTTAGGTTATATTTACTGATGGGCTATTAGAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTACAGTAATCCAGAACACCTG</pcr_primer_p1>
		<pcr_primer_p2>ACTACAAAGAGGGGAGAAGATAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCCCCTCTTTGTAGT</canonical_amplicon>
		<polymorphic_amplicon>ACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCWTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCCCCTCTTTGTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2103</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>25642</contig_pos>
        <strand>+</strand>
        <context>ACATATCCAT[C/T]CATTTTCAct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCAT</left_flank>
        <right_flank>CATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCCCCTCTTTGTAGTATAATACATTTATACAATTTATCTCGAAAAACTTTTCCCCTCCTCATTTTTCCACATCACCGAACATGACACAGACGATGGATGATCCCTATTATACTATTAGGTAGCTGTCGCTAGTTCTTCATTTTTCAGTTTTTCAGCAGATTTTCAAAATTTTGAATAGTTTGTTTTATATATGTTTGTAGCATTTTTTATGATCTACATTTTCAAATTTAGATAATTCAAAAATGGTGAATTTGAAGGAAGTTACAAACCAAAACGTATCAGTGATCTCTTTTTTTTCCATTCTGGTGCATTTTAGGTTATATTTACTGATGGGCTATTAGAACAGTTATAATCTAGTCAAATTTTATACCATTTTGTAGAACTTCTAAAAATCTATATTCTCTAATTT</canonical>
            <polymorphic>ATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATYCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCCCCTCTTTGTAGTATAATACATTTATACAATTTATCTCGAAAAACTTTTCCCCTCCTCATTTTTCCACATCACCGAACATGACACAGACGATGGATGATCCCTATTATACTATTAGGTAGCTGTCGCTAGTTCTTCATTTTTCAGTTTTTCAGCAGATTTTCAAAATTTTGAATAGTTTGTTTTATATATGTTTGTAGCATTTTTTATGATCTACATTTTCAAATTTAGATAATTCAAAAATGGTGAATTTGAAGGAAGTTACAAACCAAAACGTATCAGTGATCTCTTTTTTTTCCATTCTGGTGCATTTTAGGTTATATTTACTGATGGGCTATTAGAACAGTTATAATCTAGTCAAATTTTATACCATTTTGTAGAACTTCTAAAAATCTATATTCTCTAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTACAGTAATCCAGAACACCTG</pcr_primer_p1>
		<pcr_primer_p2>ACTACAAAGAGGGGAGAAGATAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCCCCTCTTTGTAGT</canonical_amplicon>
		<polymorphic_amplicon>ACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATYCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCCCCTCTTTGTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2104</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>29386</contig_pos>
        <strand>+</strand>
        <context>TTCCTAGATT[C/T]AATAGAAACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCTGATTTTTTGGGTCCAATTTTTAGTATTCATCTTTTTCCTAGATT</left_flank>
        <right_flank>AATAGAAACTAATTTTTAGAAATTCATAAAACATAAAAAGTTTTTTGATC</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACGGTCAAAAGAAGATGATGATGATGACAAGGAAAGCGGTGGTCTCTGTGTTTCTGTGTCAAAACAACACAGAAACAATTTTTCGAAATTTTCATCTAGCTAGAAAAAAATATTTTTTTTTTTGAAAAATTCCAATTTTCGTTTTACTCAAGTTTTTGCTCTAAAACGTGAAAATTTCTAATAAAAAGATTGAAATTATTGTCTGACTGGTAAAGAGCTTCAAAATGAGCCCAAACACGCCTAGGCTCTGCCCACTTTGTGTTTTGCGGCGCGTCGCGGTCGTGCGTCGCGTGTCTAGGCGAAATCTCAAAGTGGGCGGAGCCTAGTCGAGTTTGAGCTCATTTTGAAGCTTATAATGTGTTGAGTATGAATTTGATGATTTAATTCAAAAATTTAGAATCTGAAAGTTTGTTTTTTTTTTCGAAAATTTTGACTTTCACTTAACACATTTTCTGATTTTTTGGGTCCAATTTTTAGTATTCATCTTTTTCCTAGATTCAATAGAAACTAATTTTTAGAAATTCATAAAACATAAAAAGTTTTTTGATCTCTGAAAATTAAATGTTTGATCTACCAAAAAACCAAAAAAAAAAAAAGATTTTTGACCTCGAAAACTTTTTTGAAATCTTTCAAAATTCTTTTTTTTTTGAATTTTGTCATTTTTCCCATTTTTCCCATCATTTTTCCCCAATTTATGACCGATTTTTCGAATTTTTGGACTTTTTTAGACTTCTTTAGTTTTCCGAATTTTCAGTGTTTTTTTCCGATTTTTTTTTCTAAAATTCAGAATTTCCGATATTAAAAAAAAACTTTTTTTTAAATTCCTAAGCCTCATTAAAAAAACCTTAGCCTCAGTGAAATTCCTAAGCCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAAGCCTCAGTAAAAATTCCTAAGCCTCAGTAAAAATTCCTAAGCCTCAGTAAAAATTCCTAAGCCTCAGTAAAAAATTCCTAAGCCTCAGTAAA</canonical>
            <polymorphic>AACGGTCAAAAGAAGATGATGATGATGACAAGGAAAGCGGTGGTCTCTGTGTTTCTGTGTCAAAACAACACAGAAACAATTTTTCGAAATTTTCATCTAGCTAGAAAAAAATATTTTTTTTTTTGAAAAATTCCAATTTTCGTTTTACTCAAGTTTTTGCTCTAAAACGTGAAAATTTCTAATAAAAAGATTGAAATTATTGTCTGACTGGTAAAGAGCTTCAAAATGAGCCCAAACACGCCTAGGCTCTGCCCACTTTGTGTTTTGCGGCGCGTCGCGGTCGTGCGTCGCGTGTCTAGGCGAAATCTCAAAGTGGGCGGAGCCTAGTCGAGTTTGAGCTCATTTTGAAGCTTATAATGTGTTGAGTATGAATTTGATGATTTAATTCAAAAATTTAGAATCTGAAAGTTTGTTTTTTTTTTCGAAAATTTTGACTTTCACTTAACACATTTTCTGATTTTTTGGGTCCAATTTTTAGTATTCATCTTTTTCCTAGATTYAATAGAAACTAATTTTTAGAAATTCATAAAACATAAAAAGTTTTTTGATCTCTGAAAATTAAATGTTTGATCTACCAAAAAACCAAAAAAAAAAAAAGATTTTTGACCTCGAAAACTTTTTTGAAATCTTTCAAAATTCTTTTTTTTTTGAATTTTGTCATTTTTCCCATTTTTCCCATCATTTTTCCCCAATTTATGACCGATTTTTCGAATTTTTGGACTTTTTTAGACTTCTTTAGTTTTCCGAATTTTCAGTGTTTTTTTCCGATTTTTTTTTCTAAAATTCAGAATTTCCGATATTAAAAAAAAACTTTTTTTTAAATTCCTAAGCCTCATTAAAAAAACCTTAGCCTCAGTGAAATTCCTAAGCCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAAGCCTCAGTAAAAATTCCTAAGCCTCAGTAAAAATTCCTAAGCCTCAGTAAAAATTCCTAAGCCTCAGTAAAAAATTCCTAAGCCTCAGTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>504 398 98</canonical_bands>
                <polymorphic_bands>602 398</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>504 398 98</canonical_bands>
                <polymorphic_bands>602 398</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTTTGACTTTCACTTAACACA</pcr_primer_p1>
		<pcr_primer_p2>AAATGGGAAAAATGACAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATTTTGACTTTCACTTAACACATTTTCTGATTTTTTGGGTCCAATTTTTAGTATTCATCTTTTTCCTAGATTCAATAGAAACTAATTTTTAGAAATTCATAAAACATAAAAAGTTTTTTGATCTCTGAAAATTAAATGTTTGATCTACCAAAAAACCAAAAAAAAAAAAAGATTTTTGACCTCGAAAACTTTTTTGAAATCTTTCAAAATTCTTTTTTTTTTGAATTTTGTCATTTTTCCCATTT</canonical_amplicon>
		<polymorphic_amplicon>AAATTTTGACTTTCACTTAACACATTTTCTGATTTTTTGGGTCCAATTTTTAGTATTCATCTTTTTCCTAGATTYAATAGAAACTAATTTTTAGAAATTCATAAAACATAAAAAGTTTTTTGATCTCTGAAAATTAAATGTTTGATCTACCAAAAAACCAAAAAAAAAAAAAGATTTTTGACCTCGAAAACTTTTTTGAAATCTTTCAAAATTCTTTTTTTTTTGAATTTTGTCATTTTTCCCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2125</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>79158</contig_pos>
        <strand>+</strand>
        <context>ACAAAAACCA[A/T]AAAAAGAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGCAATAAAATAGTTCCCCCAGCCTCCCCCAGTCTTCTCACAAAAACCA</left_flank>
        <right_flank>AAAAAGAAATACACCAAGAAAGTTCGAACCCTTGACCTCTAGATCCAAGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATTGAAATGTGGTCCAATTGACACAAAAAAAAAAGTATCCCACCTAGTTTGTCCGCTTCCACTGCTACATTTTGGGAGCATTCCCATTTGAGGAGGTTTTGAGCAAATGGAGACTGAAAAATTTGAATTTCGCGGGTTTCGAAAAACTACAGTATACCTTTAGATGGGCAACACCGTCTCTGCATGACTCCATTGGCTTCTACAATACTACAATCGTAGCCGGATGGGCATGGTTCGTGTGTAGAGCAGGAACGGACTTTGGAGTTGGTTCGAAGAGGACTTCCACCGTTTGGACAAACTGGAAAATATGGAAAAGTGATTTTAAGGCTGAGCAATTTCTATAGAGTGGTTTTTGATGCAAAAATATGTAAATTTTGATTAAAGAATAACGAAAATGAAGGAAAATTCAATAGAAAATTGGGTAAAAATCTGTGAACCCCTTTAAAATTGCAATAAAATAGTTCCCCCAGCCTCCCCCAGTCTTCTCACAAAAACCATAAAAAGAAATACACCAAGAAAGTTCGAACCCTTGACCTCTAGATCCAAGGGCAAAAGCGTTAGCCATTGGGCTAGTGAGCACACTGAGAGAAGGGGAGCGGAGGGCGTATAAGAGGAGGAAGTGGGGAAACGCGGGGAAGTCGCTGGAGGAATTTTGAAGGATGAAAAAAGTCAAATTTCGGGCTGAAAATCCAAAATAAGTCAATTTTAGGAGTTTTTTTCTATGGAAAATCTTTACGTTTTGATTTTAATTTATGAACAAGCATCCGTGCAAAAACACATAAATTTTCTTCTTAAAATACCGAAAATGAATGGAAATTTGATTGAAAACTGGCTCAAATTCTTTGAAATCGCATGAAAATAGTTTTCCCAGCCTTCCCTTGCCTTCTCACAAAAATAAAAAGAGAAATACCCCGAGAAGTTTCGAACCCCGGATCTCTTGATCCAAAGGCAAAATCACTATCCATTAGACTAACGCGCACTATGAGGATAAAGGCGCG</canonical>
            <polymorphic>ATATTGAAATGTGGTCCAATTGACACAAAAAAAAAAGTATCCCACCTAGTTTGTCCGCTTCCACTGCTACATTTTGGGAGCATTCCCATTTGAGGAGGTTTTGAGCAAATGGAGACTGAAAAATTTGAATTTCGCGGGTTTCGAAAAACTACAGTATACCTTTAGATGGGCAACACCGTCTCTGCATGACTCCATTGGCTTCTACAATACTACAATCGTAGCCGGATGGGCATGGTTCGTGTGTAGAGCAGGAACGGACTTTGGAGTTGGTTCGAAGAGGACTTCCACCGTTTGGACAAACTGGAAAATATGGAAAAGTGATTTTAAGGCTGAGCAATTTCTATAGAGTGGTTTTTGATGCAAAAATATGTAAATTTTGATTAAAGAATAACGAAAATGAAGGAAAATTCAATAGAAAATTGGGTAAAAATCTGTGAACCCCTTTAAAATTGCAATAAAATAGTTCCCCCAGCCTCCCCCAGTCTTCTCACAAAAACCAWAAAAAGAAATACACCAAGAAAGTTCGAACCCTTGACCTCTAGATCCAAGGGCAAAAGCGTTAGCCATTGGGCTAGTGAGCACACTGAGAGAAGGGGAGCGGAGGGCGTATAAGAGGAGGAAGTGGGGAAACGCGGGGAAGTCGCTGGAGGAATTTTGAAGGATGAAAAAAGTCAAATTTCGGGCTGAAAATCCAAAATAAGTCAATTTTAGGAGTTTTTTTCTATGGAAAATCTTTACGTTTTGATTTTAATTTATGAACAAGCATCCGTGCAAAAACACATAAATTTTCTTCTTAAAATACCGAAAATGAATGGAAATTTGATTGAAAACTGGCTCAAATTCTTTGAAATCGCATGAAAATAGTTTTCCCAGCCTTCCCTTGCCTTCTCACAAAAATAAAAAGAGAAATACCCCGAGAAGTTTCGAACCCCGGATCTCTTGATCCAAAGGCAAAATCACTATCCATTAGACTAACGCGCACTATGAGGATAAAGGCGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGGGTAAAAATCTGTGAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTCATCCTTCAAAATTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTGGGTAAAAATCTGTGAACCCCTTTAAAATTGCAATAAAATAGTTCCCCCAGCCTCCCCCAGTCTTCTCACAAAAACCATAAAAAGAAATACACCAAGAAAGTTCGAACCCTTGACCTCTAGATCCAAGGGCAAAAGCGTTAGCCATTGGGCTAGTGAGCACACTGAGAGAAGGGGAGCGGAGGGCGTATAAGAGGAGGAAGTGGGGAAACGCGGGGAAGTCGCTGGAGGAATTTTGAAGGATGAAA</canonical_amplicon>
		<polymorphic_amplicon>AATTGGGTAAAAATCTGTGAACCCCTTTAAAATTGCAATAAAATAGTTCCCCCAGCCTCCCCCAGTCTTCTCACAAAAACCAWAAAAAGAAATACACCAAGAAAGTTCGAACCCTTGACCTCTAGATCCAAGGGCAAAAGCGTTAGCCATTGGGCTAGTGAGCACACTGAGAGAAGGGGAGCGGAGGGCGTATAAGAGGAGGAAGTGGGGAAACGCGGGGAAGTCGCTGGAGGAATTTTGAAGGATGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2126</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>79343</contig_pos>
        <strand>+</strand>
        <context>AATTTCGGGC[C/T]GAAAATCCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGAAGTCGCTGGAGGAATTTTGAAGGATGAAAAAAGTCAAATTTCGGGC</left_flank>
        <right_flank>GAAAATCCAAAATAAGTCAATTTTAGGAGTTTTTTTCTATGGAAAATCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGACTCCATTGGCTTCTACAATACTACAATCGTAGCCGGATGGGCATGGTTCGTGTGTAGAGCAGGAACGGACTTTGGAGTTGGTTCGAAGAGGACTTCCACCGTTTGGACAAACTGGAAAATATGGAAAAGTGATTTTAAGGCTGAGCAATTTCTATAGAGTGGTTTTTGATGCAAAAATATGTAAATTTTGATTAAAGAATAACGAAAATGAAGGAAAATTCAATAGAAAATTGGGTAAAAATCTGTGAACCCCTTTAAAATTGCAATAAAATAGTTCCCCCAGCCTCCCCCAGTCTTCTCACAAAAACCATAAAAAGAAATACACCAAGAAAGTTCGAACCCTTGACCTCTAGATCCAAGGGCAAAAGCGTTAGCCATTGGGCTAGTGAGCACACTGAGAGAAGGGGAGCGGAGGGCGTATAAGAGGAGGAAGTGGGGAAACGCGGGGAAGTCGCTGGAGGAATTTTGAAGGATGAAAAAAGTCAAATTTCGGGCTGAAAATCCAAAATAAGTCAATTTTAGGAGTTTTTTTCTATGGAAAATCTTTACGTTTTGATTTTAATTTATGAACAAGCATCCGTGCAAAAACACATAAATTTTCTTCTTAAAATACCGAAAATGAATGGAAATTTGATTGAAAACTGGCTCAAATTCTTTGAAATCGCATGAAAATAGTTTTCCCAGCCTTCCCTTGCCTTCTCACAAAAATAAAAAGAGAAATACCCCGAGAAGTTTCGAACCCCGGATCTCTTGATCCAAAGGCAAAATCACTATCCATTAGACTAACGCGCACTATGAGGATAAAGGCGCGGATGACGTATAAGAAGGGAGAGGAAATTGGAGGCGCACAGAGGGCGAGGGGAATTTTTGAATTTTTGAAAATGTCAAAATTTCTGGCTGAAATCTGAAAATTGGTCAATTTCTACCATTTTTAACGGAAAATACCCCAAAAAAGGGGAAAAATTAACTTACTAGCAATTTCACAATAATTTTGGC</canonical>
            <polymorphic>ATGACTCCATTGGCTTCTACAATACTACAATCGTAGCCGGATGGGCATGGTTCGTGTGTAGAGCAGGAACGGACTTTGGAGTTGGTTCGAAGAGGACTTCCACCGTTTGGACAAACTGGAAAATATGGAAAAGTGATTTTAAGGCTGAGCAATTTCTATAGAGTGGTTTTTGATGCAAAAATATGTAAATTTTGATTAAAGAATAACGAAAATGAAGGAAAATTCAATAGAAAATTGGGTAAAAATCTGTGAACCCCTTTAAAATTGCAATAAAATAGTTCCCCCAGCCTCCCCCAGTCTTCTCACAAAAACCATAAAAAGAAATACACCAAGAAAGTTCGAACCCTTGACCTCTAGATCCAAGGGCAAAAGCGTTAGCCATTGGGCTAGTGAGCACACTGAGAGAAGGGGAGCGGAGGGCGTATAAGAGGAGGAAGTGGGGAAACGCGGGGAAGTCGCTGGAGGAATTTTGAAGGATGAAAAAAGTCAAATTTCGGGCYGAAAATCCAAAATAAGTCAATTTTAGGAGTTTTTTTCTATGGAAAATCTTTACGTTTTGATTTTAATTTATGAACAAGCATCCGTGCAAAAACACATAAATTTTCTTCTTAAAATACCGAAAATGAATGGAAATTTGATTGAAAACTGGCTCAAATTCTTTGAAATCGCATGAAAATAGTTTTCCCAGCCTTCCCTTGCCTTCTCACAAAAATAAAAAGAGAAATACCCCGAGAAGTTTCGAACCCCGGATCTCTTGATCCAAAGGCAAAATCACTATCCATTAGACTAACGCGCACTATGAGGATAAAGGCGCGGATGACGTATAAGAAGGGAGAGGAAATTGGAGGCGCACAGAGGGCGAGGGGAATTTTTGAATTTTTGAAAATGTCAAAATTTCTGGCTGAAATCTGAAAATTGGTCAATTTCTACCATTTTTAACGGAAAATACCCCAAAAAAGGGGAAAAATTAACTTACTAGCAATTTCACAATAATTTTGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>213 151 143 112 108 99 91 39 23 13 8</canonical_bands>
                <polymorphic_bands>263 213 143 108 99 91 39 23 13 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGTGAGCACACTGAGAGAAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTCCATTCATTTTCGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTAGTGAGCACACTGAGAGAAGGGGAGCGGAGGGCGTATAAGAGGAGGAAGTGGGGAAACGCGGGGAAGTCGCTGGAGGAATTTTGAAGGATGAAAAAAGTCAAATTTCGGGCTGAAAATCCAAAATAAGTCAATTTTAGGAGTTTTTTTCTATGGAAAATCTTTACGTTTTGATTTTAATTTATGAACAAGCATCCGTGCAAAAACACATAAATTTTCTTCTTAAAATACCGAAAATGAATGGAAAT</canonical_amplicon>
		<polymorphic_amplicon>CTAGTGAGCACACTGAGAGAAGGGGAGCGGAGGGCGTATAAGAGGAGGAAGTGGGGAAACGCGGGGAAGTCGCTGGAGGAATTTTGAAGGATGAAAAAAGTCAAATTTCGGGCYGAAAATCCAAAATAAGTCAATTTTAGGAGTTTTTTTCTATGGAAAATCTTTACGTTTTGATTTTAATTTATGAACAAGCATCCGTGCAAAAACACATAAATTTTCTTCTTAAAATACCGAAAATGAATGGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2127</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>79385</contig_pos>
        <strand>+</strand>
        <context>TTTTTCTATG[A/G]AAAATCTTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCGGGCTGAAAATCCAAAATAAGTCAATTTTAGGAGTTTTTTTCTATG</left_flank>
        <right_flank>AAAATCTTTACGTTTTGATTTTAATTTATGAACAAGCATCCGTGCAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGCATGGTTCGTGTGTAGAGCAGGAACGGACTTTGGAGTTGGTTCGAAGAGGACTTCCACCGTTTGGACAAACTGGAAAATATGGAAAAGTGATTTTAAGGCTGAGCAATTTCTATAGAGTGGTTTTTGATGCAAAAATATGTAAATTTTGATTAAAGAATAACGAAAATGAAGGAAAATTCAATAGAAAATTGGGTAAAAATCTGTGAACCCCTTTAAAATTGCAATAAAATAGTTCCCCCAGCCTCCCCCAGTCTTCTCACAAAAACCATAAAAAGAAATACACCAAGAAAGTTCGAACCCTTGACCTCTAGATCCAAGGGCAAAAGCGTTAGCCATTGGGCTAGTGAGCACACTGAGAGAAGGGGAGCGGAGGGCGTATAAGAGGAGGAAGTGGGGAAACGCGGGGAAGTCGCTGGAGGAATTTTGAAGGATGAAAAAAGTCAAATTTCGGGCTGAAAATCCAAAATAAGTCAATTTTAGGAGTTTTTTTCTATGGAAAATCTTTACGTTTTGATTTTAATTTATGAACAAGCATCCGTGCAAAAACACATAAATTTTCTTCTTAAAATACCGAAAATGAATGGAAATTTGATTGAAAACTGGCTCAAATTCTTTGAAATCGCATGAAAATAGTTTTCCCAGCCTTCCCTTGCCTTCTCACAAAAATAAAAAGAGAAATACCCCGAGAAGTTTCGAACCCCGGATCTCTTGATCCAAAGGCAAAATCACTATCCATTAGACTAACGCGCACTATGAGGATAAAGGCGCGGATGACGTATAAGAAGGGAGAGGAAATTGGAGGCGCACAGAGGGCGAGGGGAATTTTTGAATTTTTGAAAATGTCAAAATTTCTGGCTGAAATCTGAAAATTGGTCAATTTCTACCATTTTTAACGGAAAATACCCCAAAAAAGGGGAAAAATTAACTTACTAGCAATTTCACAATAATTTTGGCACTTTTCAATCGACGGGAAGTTGTTGGAGTTGCCATCACAGC</canonical>
            <polymorphic>GGGCATGGTTCGTGTGTAGAGCAGGAACGGACTTTGGAGTTGGTTCGAAGAGGACTTCCACCGTTTGGACAAACTGGAAAATATGGAAAAGTGATTTTAAGGCTGAGCAATTTCTATAGAGTGGTTTTTGATGCAAAAATATGTAAATTTTGATTAAAGAATAACGAAAATGAAGGAAAATTCAATAGAAAATTGGGTAAAAATCTGTGAACCCCTTTAAAATTGCAATAAAATAGTTCCCCCAGCCTCCCCCAGTCTTCTCACAAAAACCATAAAAAGAAATACACCAAGAAAGTTCGAACCCTTGACCTCTAGATCCAAGGGCAAAAGCGTTAGCCATTGGGCTAGTGAGCACACTGAGAGAAGGGGAGCGGAGGGCGTATAAGAGGAGGAAGTGGGGAAACGCGGGGAAGTCGCTGGAGGAATTTTGAAGGATGAAAAAAGTCAAATTTCGGGCTGAAAATCCAAAATAAGTCAATTTTAGGAGTTTTTTTCTATGRAAAATCTTTACGTTTTGATTTTAATTTATGAACAAGCATCCGTGCAAAAACACATAAATTTTCTTCTTAAAATACCGAAAATGAATGGAAATTTGATTGAAAACTGGCTCAAATTCTTTGAAATCGCATGAAAATAGTTTTCCCAGCCTTCCCTTGCCTTCTCACAAAAATAAAAAGAGAAATACCCCGAGAAGTTTCGAACCCCGGATCTCTTGATCCAAAGGCAAAATCACTATCCATTAGACTAACGCGCACTATGAGGATAAAGGCGCGGATGACGTATAAGAAGGGAGAGGAAATTGGAGGCGCACAGAGGGCGAGGGGAATTTTTGAATTTTTGAAAATGTCAAAATTTCTGGCTGAAATCTGAAAATTGGTCAATTTCTACCATTTTTAACGGAAAATACCCCAAAAAAGGGGAAAAATTAACTTACTAGCAATTTCACAATAATTTTGGCACTTTTCAATCGACGGGAAGTTGTTGGAGTTGCCATCACAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGTGAGCACACTGAGAGAAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTCCATTCATTTTCGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTAGTGAGCACACTGAGAGAAGGGGAGCGGAGGGCGTATAAGAGGAGGAAGTGGGGAAACGCGGGGAAGTCGCTGGAGGAATTTTGAAGGATGAAAAAAGTCAAATTTCGGGCTGAAAATCCAAAATAAGTCAATTTTAGGAGTTTTTTTCTATGGAAAATCTTTACGTTTTGATTTTAATTTATGAACAAGCATCCGTGCAAAAACACATAAATTTTCTTCTTAAAATACCGAAAATGAATGGAAAT</canonical_amplicon>
		<polymorphic_amplicon>CTAGTGAGCACACTGAGAGAAGGGGAGCGGAGGGCGTATAAGAGGAGGAAGTGGGGAAACGCGGGGAAGTCGCTGGAGGAATTTTGAAGGATGAAAAAAGTCAAATTTCGGGCTGAAAATCCAAAATAAGTCAATTTTAGGAGTTTTTTTCTATGRAAAATCTTTACGTTTTGATTTTAATTTATGAACAAGCATCCGTGCAAAAACACATAAATTTTCTTCTTAAAATACCGAAAATGAATGGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2128</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>79455</contig_pos>
        <strand>+</strand>
        <context>TTTCTTCTTA[A/C]AATACCGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTAATTTATGAACAAGCATCCGTGCAAAAACACATAAATTTTCTTCTTA</left_flank>
        <right_flank>AATACCGAAAATGAATGGAAATTTGATTGAAAACTGGCTCAAATTCTTTG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTGGAAAATATGGAAAAGTGATTTTAAGGCTGAGCAATTTCTATAGAGTGGTTTTTGATGCAAAAATATGTAAATTTTGATTAAAGAATAACGAAAATGAAGGAAAATTCAATAGAAAATTGGGTAAAAATCTGTGAACCCCTTTAAAATTGCAATAAAATAGTTCCCCCAGCCTCCCCCAGTCTTCTCACAAAAACCATAAAAAGAAATACACCAAGAAAGTTCGAACCCTTGACCTCTAGATCCAAGGGCAAAAGCGTTAGCCATTGGGCTAGTGAGCACACTGAGAGAAGGGGAGCGGAGGGCGTATAAGAGGAGGAAGTGGGGAAACGCGGGGAAGTCGCTGGAGGAATTTTGAAGGATGAAAAAAGTCAAATTTCGGGCTGAAAATCCAAAATAAGTCAATTTTAGGAGTTTTTTTCTATGGAAAATCTTTACGTTTTGATTTTAATTTATGAACAAGCATCCGTGCAAAAACACATAAATTTTCTTCTTAAAATACCGAAAATGAATGGAAATTTGATTGAAAACTGGCTCAAATTCTTTGAAATCGCATGAAAATAGTTTTCCCAGCCTTCCCTTGCCTTCTCACAAAAATAAAAAGAGAAATACCCCGAGAAGTTTCGAACCCCGGATCTCTTGATCCAAAGGCAAAATCACTATCCATTAGACTAACGCGCACTATGAGGATAAAGGCGCGGATGACGTATAAGAAGGGAGAGGAAATTGGAGGCGCACAGAGGGCGAGGGGAATTTTTGAATTTTTGAAAATGTCAAAATTTCTGGCTGAAATCTGAAAATTGGTCAATTTCTACCATTTTTAACGGAAAATACCCCAAAAAAGGGGAAAAATTAACTTACTAGCAATTTCACAATAATTTTGGCACTTTTCAATCGACGGGAAGTTGTTGGAGTTGCCATCACAGCCCAAGAAAAGGAAGCTTTGGCATTCCTTCAATAAAATTATATTAAAACTGAAATTTTCGAAAATTCTGAC</canonical>
            <polymorphic>AAACTGGAAAATATGGAAAAGTGATTTTAAGGCTGAGCAATTTCTATAGAGTGGTTTTTGATGCAAAAATATGTAAATTTTGATTAAAGAATAACGAAAATGAAGGAAAATTCAATAGAAAATTGGGTAAAAATCTGTGAACCCCTTTAAAATTGCAATAAAATAGTTCCCCCAGCCTCCCCCAGTCTTCTCACAAAAACCATAAAAAGAAATACACCAAGAAAGTTCGAACCCTTGACCTCTAGATCCAAGGGCAAAAGCGTTAGCCATTGGGCTAGTGAGCACACTGAGAGAAGGGGAGCGGAGGGCGTATAAGAGGAGGAAGTGGGGAAACGCGGGGAAGTCGCTGGAGGAATTTTGAAGGATGAAAAAAGTCAAATTTCGGGCTGAAAATCCAAAATAAGTCAATTTTAGGAGTTTTTTTCTATGGAAAATCTTTACGTTTTGATTTTAATTTATGAACAAGCATCCGTGCAAAAACACATAAATTTTCTTCTTAMAATACCGAAAATGAATGGAAATTTGATTGAAAACTGGCTCAAATTCTTTGAAATCGCATGAAAATAGTTTTCCCAGCCTTCCCTTGCCTTCTCACAAAAATAAAAAGAGAAATACCCCGAGAAGTTTCGAACCCCGGATCTCTTGATCCAAAGGCAAAATCACTATCCATTAGACTAACGCGCACTATGAGGATAAAGGCGCGGATGACGTATAAGAAGGGAGAGGAAATTGGAGGCGCACAGAGGGCGAGGGGAATTTTTGAATTTTTGAAAATGTCAAAATTTCTGGCTGAAATCTGAAAATTGGTCAATTTCTACCATTTTTAACGGAAAATACCCCAAAAAAGGGGAAAAATTAACTTACTAGCAATTTCACAATAATTTTGGCACTTTTCAATCGACGGGAAGTTGTTGGAGTTGCCATCACAGCCCAAGAAAAGGAAGCTTTGGCATTCCTTCAATAAAATTATATTAAAACTGAAATTTTCGAAAATTCTGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>327 304 116 63 57 46 32 28 27</canonical_bands>
                <polymorphic_bands>373 304 116 63 57 32 28 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATCCAAAATAAGTCAATTTTA</pcr_primer_p1>
		<pcr_primer_p2>CTCGGGGTATTTCTCTTTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>GAAAATCCAAAATAAGTCAATTTTAGGAGTTTTTTTCTATGGAAAATCTTTACGTTTTGATTTTAATTTATGAACAAGCATCCGTGCAAAAACACATAAATTTTCTTCTTAAAATACCGAAAATGAATGGAAATTTGATTGAAAACTGGCTCAAATTCTTTGAAATCGCATGAAAATAGTTTTCCCAGCCTTCCCTTGCCTTCTCACAAAAATAAAAAGAGAAATACCCCGAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATCCAAAATAAGTCAATTTTAGGAGTTTTTTTCTATGGAAAATCTTTACGTTTTGATTTTAATTTATGAACAAGCATCCGTGCAAAAACACATAAATTTTCTTCTTAMAATACCGAAAATGAATGGAAATTTGATTGAAAACTGGCTCAAATTCTTTGAAATCGCATGAAAATAGTTTTCCCAGCCTTCCCTTGCCTTCTCACAAAAATAAAAAGAGAAATACCCCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2180</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>128898</contig_pos>
        <strand></strand>
        <context>acytGGGTCC[A/C]TGGATCCCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCC</left_flank>
        <right_flank>TGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAACATTTTTCAACGAATTTTAGCTCAAAATGTAGCTGATTTCAAGAATCTTCCAAAAATCTGAATTTCCAGGTATCATGACTCTTCTCTCAATGTCTGTGATGCTCCTAATGCTTGTGGGAGAGATGAAGTTCGCCATGGAATCCGTCCCAGGACAACGTGGCAGTTTTTCGGATGTTCCCTTAATGGGAATCTATTATATGACACTAATTTGTATAGTGAGCATTGCCACGTGTACATCATCGATTTTCGTTCATCTGGAGAAGTTTGCACTGAGGAATCCTAGTTGGCAGGCGAGCATTTTCTCTAAATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTTTTTAAATTTTCAGAGTGTCCCATGGTACATCCGCTGGCTGGCCGCGAAAAAACTCTTCTGTTGTTACGTTCCAAAATCTTTCCGATACGATAAAGACGCCTATAGTAGGAATAACAATGTACAGGCGATTTCGCTACACTCACACCCGATAGAAATGTTGGCAAGAATTTGATTCCCAAAGAGGTAAGTTTTTAAAAAATTAAATAAATTTTCAAAAAAATATTTTTTTAGATCAATTTCACTGAAGTCAACCAGGATGCACCACTGCATGATGTGCTGGAGGGTCAGTTTTTTAATTCGTTGAAAATTTTATTTAAAATCTGAATTTAGCAGCTAAAGAGCTTTGAAATGAGTCTAAACACGACTAGGCTCCGCCCATTTTCAGTTTTCGTGGCGAGACCCGAATTTTCAAAAAATTTTT</canonical>
            <polymorphic>CCAACATTTTTCAACGAATTTTAGCTCAAAATGTAGCTGATTTCAAGAATCTTCCAAAAATCTGAATTTCCAGGTATCATGACTCTTCTCTCAATGTCTGTGATGCTCCTAATGCTTGTGGGAGAGATGAAGTTCGCCATGGAATCCGTCCCAGGACAACGTGGCAGTTTTTCGGATGTTCCCTTAATGGGAATCTATTATATGACACTAATTTGTATAGTGAGCATTGCCACGTGTACATCATCGATTTTCGTTCATCTGGAGAAGTTTGCACTGAGGAATCCTAGTTGGCAGGCGAGCATTTTCTCTAAATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCMTGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTTTTTAAATTTTCAGAGTGTCCCATGGTACATCCGCTGGCTGGCCGCGAAAAAACTCTTCTGTTGTTACGTTCCAAAATCTTTCCGATACGATAAAGACGCCTATAGTAGGAATAACAATGTACAGGCGATTTCGCTACACTCACACCCGATAGAAATGTTGGCAAGAATTTGATTCCCAAAGAGGTAAGTTTTTAAAAAATTAAATAAATTTTCAAAAAAATATTTTTTTAGATCAATTTCACTGAAGTCAACCAGGATGCACCACTGCATGATGTGCTGGAGGGTCAGTTTTTTAATTCGTTGAAAATTTTATTTAAAATCTGAATTTAGCAGCTAAAGAGCTTTGAAATGAGTCTAAACACGACTAGGCTCCGCCCATTTTCAGTTTTCGTGGCGAGACCCGAATTTTCAAAAAATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCATGG</site>
                <isoschizomers>
                    <enzyme>Bsp19I</enzyme>
                    <enzyme>NcoI</enzyme>
                </isoschizomers>
                <canonical_bands>401 361 137 101</canonical_bands>
                <polymorphic_bands>462 401 137</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>401 361 137 101</canonical_bands>
                <polymorphic_bands>462 401 137</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>401 361 137 101</canonical_bands>
                <polymorphic_bands>462 401 137</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>361 247 153 101 78 60</canonical_bands>
                <polymorphic_bands>462 247 153 78 60</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCGTCTCAAAAATAAAAGTGG</pcr_primer_p1>
		<pcr_primer_p2>AAATTCTGAATGTCCCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>ATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCMTGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2181</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>128913</contig_pos>
        <strand></strand>
        <context>TCCCAGTGAA[A/T]TTTTTTTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAA</left_flank>
        <right_flank>TTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTTTAGCTCAAAATGTAGCTGATTTCAAGAATCTTCCAAAAATCTGAATTTCCAGGTATCATGACTCTTCTCTCAATGTCTGTGATGCTCCTAATGCTTGTGGGAGAGATGAAGTTCGCCATGGAATCCGTCCCAGGACAACGTGGCAGTTTTTCGGATGTTCCCTTAATGGGAATCTATTATATGACACTAATTTGTATAGTGAGCATTGCCACGTGTACATCATCGATTTTCGTTCATCTGGAGAAGTTTGCACTGAGGAATCCTAGTTGGCAGGCGAGCATTTTCTCTAAATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTTTTTAAATTTTCAGAGTGTCCCATGGTACATCCGCTGGCTGGCCGCGAAAAAACTCTTCTGTTGTTACGTTCCAAAATCTTTCCGATACGATAAAGACGCCTATAGTAGGAATAACAATGTACAGGCGATTTCGCTACACTCACACCCGATAGAAATGTTGGCAAGAATTTGATTCCCAAAGAGGTAAGTTTTTAAAAAATTAAATAAATTTTCAAAAAAATATTTTTTTAGATCAATTTCACTGAAGTCAACCAGGATGCACCACTGCATGATGTGCTGGAGGGTCAGTTTTTTAATTCGTTGAAAATTTTATTTAAAATCTGAATTTAGCAGCTAAAGAGCTTTGAAATGAGTCTAAACACGACTAGGCTCCGCCCATTTTCAGTTTTCGTGGCGAGACCCGAATTTTCAAAAAATTTTTAGAATGTAGTCATGT</canonical>
            <polymorphic>GAATTTTAGCTCAAAATGTAGCTGATTTCAAGAATCTTCCAAAAATCTGAATTTCCAGGTATCATGACTCTTCTCTCAATGTCTGTGATGCTCCTAATGCTTGTGGGAGAGATGAAGTTCGCCATGGAATCCGTCCCAGGACAACGTGGCAGTTTTTCGGATGTTCCCTTAATGGGAATCTATTATATGACACTAATTTGTATAGTGAGCATTGCCACGTGTACATCATCGATTTTCGTTCATCTGGAGAAGTTTGCACTGAGGAATCCTAGTTGGCAGGCGAGCATTTTCTCTAAATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAWTTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTTTTTAAATTTTCAGAGTGTCCCATGGTACATCCGCTGGCTGGCCGCGAAAAAACTCTTCTGTTGTTACGTTCCAAAATCTTTCCGATACGATAAAGACGCCTATAGTAGGAATAACAATGTACAGGCGATTTCGCTACACTCACACCCGATAGAAATGTTGGCAAGAATTTGATTCCCAAAGAGGTAAGTTTTTAAAAAATTAAATAAATTTTCAAAAAAATATTTTTTTAGATCAATTTCACTGAAGTCAACCAGGATGCACCACTGCATGATGTGCTGGAGGGTCAGTTTTTTAATTCGTTGAAAATTTTATTTAAAATCTGAATTTAGCAGCTAAAGAGCTTTGAAATGAGTCTAAACACGACTAGGCTCCGCCCATTTTCAGTTTTCGTGGCGAGACCCGAATTTTCAAAAAATTTTTAGAATGTAGTCATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>449 161 99 80 48 43 41 22 18 18 11 9 1</canonical_bands>
                <polymorphic_bands>492 161 99 80 48 41 22 18 18 11 9 1</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>257 161 145 80 60 48 47 43 32 28 22 18 18 11 11 9 9 1</canonical_bands>
                <polymorphic_bands>257 161 145 90 80 60 48 32 28 22 18 18 11 11 9 9 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCGTCTCAAAAATAAAAGTGG</pcr_primer_p1>
		<pcr_primer_p2>AAATTCTGAATGTCCCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>ATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAWTTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2182</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>128946</contig_pos>
        <strand></strand>
        <context>TTTGCTCATT[C/T]TATCTAAAAW</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATT</left_flank>
        <right_flank>TATCTAAAAATTTTTGGGACATTCAGAATTTTTTAAATTTTCAGAGTGTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTTCCAAAAATCTGAATTTCCAGGTATCATGACTCTTCTCTCAATGTCTGTGATGCTCCTAATGCTTGTGGGAGAGATGAAGTTCGCCATGGAATCCGTCCCAGGACAACGTGGCAGTTTTTCGGATGTTCCCTTAATGGGAATCTATTATATGACACTAATTTGTATAGTGAGCATTGCCACGTGTACATCATCGATTTTCGTTCATCTGGAGAAGTTTGCACTGAGGAATCCTAGTTGGCAGGCGAGCATTTTCTCTAAATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTTTTTAAATTTTCAGAGTGTCCCATGGTACATCCGCTGGCTGGCCGCGAAAAAACTCTTCTGTTGTTACGTTCCAAAATCTTTCCGATACGATAAAGACGCCTATAGTAGGAATAACAATGTACAGGCGATTTCGCTACACTCACACCCGATAGAAATGTTGGCAAGAATTTGATTCCCAAAGAGGTAAGTTTTTAAAAAATTAAATAAATTTTCAAAAAAATATTTTTTTAGATCAATTTCACTGAAGTCAACCAGGATGCACCACTGCATGATGTGCTGGAGGGTCAGTTTTTTAATTCGTTGAAAATTTTATTTAAAATCTGAATTTAGCAGCTAAAGAGCTTTGAAATGAGTCTAAACACGACTAGGCTCCGCCCATTTTCAGTTTTCGTGGCGAGACCCGAATTTTCAAAAAATTTTTAGAATGTAGTCATGTTTATACTCATTTTGAAGCTCTTAACATTTCAAA</canonical>
            <polymorphic>ATCTTCCAAAAATCTGAATTTCCAGGTATCATGACTCTTCTCTCAATGTCTGTGATGCTCCTAATGCTTGTGGGAGAGATGAAGTTCGCCATGGAATCCGTCCCAGGACAACGTGGCAGTTTTTCGGATGTTCCCTTAATGGGAATCTATTATATGACACTAATTTGTATAGTGAGCATTGCCACGTGTACATCATCGATTTTCGTTCATCTGGAGAAGTTTGCACTGAGGAATCCTAGTTGGCAGGCGAGCATTTTCTCTAAATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTYTATCTAAAAATTTTTGGGACATTCAGAATTTTTTAAATTTTCAGAGTGTCCCATGGTACATCCGCTGGCTGGCCGCGAAAAAACTCTTCTGTTGTTACGTTCCAAAATCTTTCCGATACGATAAAGACGCCTATAGTAGGAATAACAATGTACAGGCGATTTCGCTACACTCACACCCGATAGAAATGTTGGCAAGAATTTGATTCCCAAAGAGGTAAGTTTTTAAAAAATTAAATAAATTTTCAAAAAAATATTTTTTTAGATCAATTTCACTGAAGTCAACCAGGATGCACCACTGCATGATGTGCTGGAGGGTCAGTTTTTTAATTCGTTGAAAATTTTATTTAAAATCTGAATTTAGCAGCTAAAGAGCTTTGAAATGAGTCTAAACACGACTAGGCTCCGCCCATTTTCAGTTTTCGTGGCGAGACCCGAATTTTCAAAAAATTTTTAGAATGTAGTCATGTTTATACTCATTTTGAAGCTCTTAACATTTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGTCTCAAAAATAAAAGTGG</pcr_primer_p1>
		<pcr_primer_p2>GTACCATGGGACACTCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>296</pcr_amplicon_size>
		<canonical_amplicon>ATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTTTTTAAATTTTCAGAGTGTCCCATGGTAC</canonical_amplicon>
		<polymorphic_amplicon>ATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTYTATCTAAAAATTTTTGGGACATTCAGAATTTTTTAAATTTTCAGAGTGTCCCATGGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2183</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>128956</contig_pos>
        <strand></strand>
        <context>YTATCTAAAA[A/T]TTTTTGGGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAA</left_flank>
        <right_flank>TTTTTGGGACATTCAGAATTTTTTAAATTTTCAGAGTGTCCCATGGTACA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCTGAATTTCCAGGTATCATGACTCTTCTCTCAATGTCTGTGATGCTCCTAATGCTTGTGGGAGAGATGAAGTTCGCCATGGAATCCGTCCCAGGACAACGTGGCAGTTTTTCGGATGTTCCCTTAATGGGAATCTATTATATGACACTAATTTGTATAGTGAGCATTGCCACGTGTACATCATCGATTTTCGTTCATCTGGAGAAGTTTGCACTGAGGAATCCTAGTTGGCAGGCGAGCATTTTCTCTAAATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTTTTTAAATTTTCAGAGTGTCCCATGGTACATCCGCTGGCTGGCCGCGAAAAAACTCTTCTGTTGTTACGTTCCAAAATCTTTCCGATACGATAAAGACGCCTATAGTAGGAATAACAATGTACAGGCGATTTCGCTACACTCACACCCGATAGAAATGTTGGCAAGAATTTGATTCCCAAAGAGGTAAGTTTTTAAAAAATTAAATAAATTTTCAAAAAAATATTTTTTTAGATCAATTTCACTGAAGTCAACCAGGATGCACCACTGCATGATGTGCTGGAGGGTCAGTTTTTTAATTCGTTGAAAATTTTATTTAAAATCTGAATTTAGCAGCTAAAGAGCTTTGAAATGAGTCTAAACACGACTAGGCTCCGCCCATTTTCAGTTTTCGTGGCGAGACCCGAATTTTCAAAAAATTTTTAGAATGTAGTCATGTTTATACTCATTTTGAAGCTCTTAACATTTCAAATCGAACGCAT</canonical>
            <polymorphic>AATCTGAATTTCCAGGTATCATGACTCTTCTCTCAATGTCTGTGATGCTCCTAATGCTTGTGGGAGAGATGAAGTTCGCCATGGAATCCGTCCCAGGACAACGTGGCAGTTTTTCGGATGTTCCCTTAATGGGAATCTATTATATGACACTAATTTGTATAGTGAGCATTGCCACGTGTACATCATCGATTTTCGTTCATCTGGAGAAGTTTGCACTGAGGAATCCTAGTTGGCAGGCGAGCATTTTCTCTAAATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAWTTTTTGGGACATTCAGAATTTTTTAAATTTTCAGAGTGTCCCATGGTACATCCGCTGGCTGGCCGCGAAAAAACTCTTCTGTTGTTACGTTCCAAAATCTTTCCGATACGATAAAGACGCCTATAGTAGGAATAACAATGTACAGGCGATTTCGCTACACTCACACCCGATAGAAATGTTGGCAAGAATTTGATTCCCAAAGAGGTAAGTTTTTAAAAAATTAAATAAATTTTCAAAAAAATATTTTTTTAGATCAATTTCACTGAAGTCAACCAGGATGCACCACTGCATGATGTGCTGGAGGGTCAGTTTTTTAATTCGTTGAAAATTTTATTTAAAATCTGAATTTAGCAGCTAAAGAGCTTTGAAATGAGTCTAAACACGACTAGGCTCCGCCCATTTTCAGTTTTCGTGGCGAGACCCGAATTTTCAAAAAATTTTTAGAATGTAGTCATGTTTATACTCATTTTGAAGCTCTTAACATTTCAAATCGAACGCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>449 161 99 80 65 43 41 18 18 11 9 6</canonical_bands>
                <polymorphic_bands>449 161 99 80 65 61 41 18 11 9 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>257 161 145 80 65 60 47 43 32 28 18 18 11 11 9 9 6</canonical_bands>
                <polymorphic_bands>257 161 145 80 65 61 60 47 32 28 18 11 11 9 9 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCGTCTCAAAAATAAAAGTGG</pcr_primer_p1>
		<pcr_primer_p2>GAACGTAACAACAGAAGAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>339</pcr_amplicon_size>
		<canonical_amplicon>ATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTTTTTAAATTTTCAGAGTGTCCCATGGTACATCCGCTGGCTGGCCGCGAAAAAACTCTTCTGTTGTTACGTTC</canonical_amplicon>
		<polymorphic_amplicon>ATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAWTTTTTGGGACATTCAGAATTTTTTAAATTTTCAGAGTGTCCCATGGTACATCCGCTGGCTGGCCGCGAAAAAACTCTTCTGTTGTTACGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2184</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>128980</contig_pos>
        <strand></strand>
        <context>CAGAATTTTT[T/C]AAATTTTCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTTTT</left_flank>
        <right_flank>AAATTTTCAGAGTGTCCCATGGTACATCCGCTGGCTGGCCGCGAAAAAAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTTCTCTCAATGTCTGTGATGCTCCTAATGCTTGTGGGAGAGATGAAGTTCGCCATGGAATCCGTCCCAGGACAACGTGGCAGTTTTTCGGATGTTCCCTTAATGGGAATCTATTATATGACACTAATTTGTATAGTGAGCATTGCCACGTGTACATCATCGATTTTCGTTCATCTGGAGAAGTTTGCACTGAGGAATCCTAGTTGGCAGGCGAGCATTTTCTCTAAATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTTTTTAAATTTTCAGAGTGTCCCATGGTACATCCGCTGGCTGGCCGCGAAAAAACTCTTCTGTTGTTACGTTCCAAAATCTTTCCGATACGATAAAGACGCCTATAGTAGGAATAACAATGTACAGGCGATTTCGCTACACTCACACCCGATAGAAATGTTGGCAAGAATTTGATTCCCAAAGAGGTAAGTTTTTAAAAAATTAAATAAATTTTCAAAAAAATATTTTTTTAGATCAATTTCACTGAAGTCAACCAGGATGCACCACTGCATGATGTGCTGGAGGGTCAGTTTTTTAATTCGTTGAAAATTTTATTTAAAATCTGAATTTAGCAGCTAAAGAGCTTTGAAATGAGTCTAAACACGACTAGGCTCCGCCCATTTTCAGTTTTCGTGGCGAGACCCGAATTTTCAAAAAATTTTTAGAATGTAGTCATGTTTATACTCATTTTGAAGCTCTTAACATTTCAAATCGAACGCATCAAATGTTGTCTTGCTGGCATTAA</canonical>
            <polymorphic>CTCTTCTCTCAATGTCTGTGATGCTCCTAATGCTTGTGGGAGAGATGAAGTTCGCCATGGAATCCGTCCCAGGACAACGTGGCAGTTTTTCGGATGTTCCCTTAATGGGAATCTATTATATGACACTAATTTGTATAGTGAGCATTGCCACGTGTACATCATCGATTTTCGTTCATCTGGAGAAGTTTGCACTGAGGAATCCTAGTTGGCAGGCGAGCATTTTCTCTAAATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTTTTYAAATTTTCAGAGTGTCCCATGGTACATCCGCTGGCTGGCCGCGAAAAAACTCTTCTGTTGTTACGTTCCAAAATCTTTCCGATACGATAAAGACGCCTATAGTAGGAATAACAATGTACAGGCGATTTCGCTACACTCACACCCGATAGAAATGTTGGCAAGAATTTGATTCCCAAAGAGGTAAGTTTTTAAAAAATTAAATAAATTTTCAAAAAAATATTTTTTTAGATCAATTTCACTGAAGTCAACCAGGATGCACCACTGCATGATGTGCTGGAGGGTCAGTTTTTTAATTCGTTGAAAATTTTATTTAAAATCTGAATTTAGCAGCTAAAGAGCTTTGAAATGAGTCTAAACACGACTAGGCTCCGCCCATTTTCAGTTTTCGTGGCGAGACCCGAATTTTCAAAAAATTTTTAGAATGTAGTCATGTTTATACTCATTTTGAAGCTCTTAACATTTCAAATCGAACGCATCAAATGTTGTCTTGCTGGCATTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 190 188 122</canonical_bands>
                <polymorphic_bands>690 188 122</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>397 190 143 102 93 43 21 8 3</canonical_bands>
                <polymorphic_bands>587 143 102 93 43 21 8 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCGTCTCAAAAATAAAAGTGG</pcr_primer_p1>
		<pcr_primer_p2>GAACGTAACAACAGAAGAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>339</pcr_amplicon_size>
		<canonical_amplicon>ATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTTTTTAAATTTTCAGAGTGTCCCATGGTACATCCGCTGGCTGGCCGCGAAAAAACTCTTCTGTTGTTACGTTC</canonical_amplicon>
		<polymorphic_amplicon>ATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTTTTYAAATTTTCAGAGTGTCCCATGGTACATCCGCTGGCTGGCCGCGAAAAAACTCTTCTGTTGTTACGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2185</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>129080</contig_pos>
        <strand></strand>
        <context>AAGACGCCTA[T/C]AGTAGGAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTCTTCTGTTGTTACGTTCCAAAATCTTTCCGATACGATAAAGACGCCTA</left_flank>
        <right_flank>AGTAGGAATAACAATGTACAGGCGATTTCGCTACACTCACACCCGATAGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTAATGGGAATCTATTATATGACACTAATTTGTATAGTGAGCATTGCCACGTGTACATCATCGATTTTCGTTCATCTGGAGAAGTTTGCACTGAGGAATCCTAGTTGGCAGGCGAGCATTTTCTCTAAATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTTTTTAAATTTTCAGAGTGTCCCATGGTACATCCGCTGGCTGGCCGCGAAAAAACTCTTCTGTTGTTACGTTCCAAAATCTTTCCGATACGATAAAGACGCCTATAGTAGGAATAACAATGTACAGGCGATTTCGCTACACTCACACCCGATAGAAATGTTGGCAAGAATTTGATTCCCAAAGAGGTAAGTTTTTAAAAAATTAAATAAATTTTCAAAAAAATATTTTTTTAGATCAATTTCACTGAAGTCAACCAGGATGCACCACTGCATGATGTGCTGGAGGGTCAGTTTTTTAATTCGTTGAAAATTTTATTTAAAATCTGAATTTAGCAGCTAAAGAGCTTTGAAATGAGTCTAAACACGACTAGGCTCCGCCCATTTTCAGTTTTCGTGGCGAGACCCGAATTTTCAAAAAATTTTTAGAATGTAGTCATGTTTATACTCATTTTGAAGCTCTTAACATTTCAAATCGAACGCATCAAATGTTGTCTTGCTGGCATTAAAACTGACCAAGTTATGGTAGTTTTACCAAAATTCAAGTTATCGTGGTGGGACCCAAAATCCGAAAATAGTCTTTTTTGAAACCTAGTCGTGTTTATACTC</canonical>
            <polymorphic>CTTAATGGGAATCTATTATATGACACTAATTTGTATAGTGAGCATTGCCACGTGTACATCATCGATTTTCGTTCATCTGGAGAAGTTTGCACTGAGGAATCCTAGTTGGCAGGCGAGCATTTTCTCTAAATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTTTTTAAATTTTCAGAGTGTCCCATGGTACATCCGCTGGCTGGCCGCGAAAAAACTCTTCTGTTGTTACGTTCCAAAATCTTTCCGATACGATAAAGACGCCTAYAGTAGGAATAACAATGTACAGGCGATTTCGCTACACTCACACCCGATAGAAATGTTGGCAAGAATTTGATTCCCAAAGAGGTAAGTTTTTAAAAAATTAAATAAATTTTCAAAAAAATATTTTTTTAGATCAATTTCACTGAAGTCAACCAGGATGCACCACTGCATGATGTGCTGGAGGGTCAGTTTTTTAATTCGTTGAAAATTTTATTTAAAATCTGAATTTAGCAGCTAAAGAGCTTTGAAATGAGTCTAAACACGACTAGGCTCCGCCCATTTTCAGTTTTCGTGGCGAGACCCGAATTTTCAAAAAATTTTTAGAATGTAGTCATGTTTATACTCATTTTGAAGCTCTTAACATTTCAAATCGAACGCATCAAATGTTGTCTTGCTGGCATTAAAACTGACCAAGTTATGGTAGTTTTACCAAAATTCAAGTTATCGTGGTGGGACCCAAAATCCGAAAATAGTCTTTTTTGAAACCTAGTCGTGTTTATACTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTCTTCTGTTGTTACGTTCC</pcr_primer_p1>
		<pcr_primer_p2>GGTTGACTTCAGTGAAATTGAT</pcr_primer_p2>
		<pcr_amplicon_size>203</pcr_amplicon_size>
		<canonical_amplicon>AACTCTTCTGTTGTTACGTTCCAAAATCTTTCCGATACGATAAAGACGCCTATAGTAGGAATAACAATGTACAGGCGATTTCGCTACACTCACACCCGATAGAAATGTTGGCAAGAATTTGATTCCCAAAGAGGTAAGTTTTTAAAAAATTAAATAAATTTTCAAAAAAATATTTTTTTAGATCAATTTCACTGAAGTCAACC</canonical_amplicon>
		<polymorphic_amplicon>AACTCTTCTGTTGTTACGTTCCAAAATCTTTCCGATACGATAAAGACGCCTAYAGTAGGAATAACAATGTACAGGCGATTTCGCTACACTCACACCCGATAGAAATGTTGGCAAGAATTTGATTCCCAAAGAGGTAAGTTTTTAAAAAATTAAATAAATTTTCAAAAAAATATTTTTTTAGATCAATTTCACTGAAGTCAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2186</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>129104</contig_pos>
        <strand></strand>
        <context>ATGTACAGGC[G/A]ATTTCGCTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCTTTCCGATACGATAAAGACGCCTATAGTAGGAATAACAATGTACAGGC</left_flank>
        <right_flank>ATTTCGCTACACTCACACCCGATAGAAATGTTGGCAAGAATTTGATTCCC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTAATTTGTATAGTGAGCATTGCCACGTGTACATCATCGATTTTCGTTCATCTGGAGAAGTTTGCACTGAGGAATCCTAGTTGGCAGGCGAGCATTTTCTCTAAATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTTTTTAAATTTTCAGAGTGTCCCATGGTACATCCGCTGGCTGGCCGCGAAAAAACTCTTCTGTTGTTACGTTCCAAAATCTTTCCGATACGATAAAGACGCCTATAGTAGGAATAACAATGTACAGGCGATTTCGCTACACTCACACCCGATAGAAATGTTGGCAAGAATTTGATTCCCAAAGAGGTAAGTTTTTAAAAAATTAAATAAATTTTCAAAAAAATATTTTTTTAGATCAATTTCACTGAAGTCAACCAGGATGCACCACTGCATGATGTGCTGGAGGGTCAGTTTTTTAATTCGTTGAAAATTTTATTTAAAATCTGAATTTAGCAGCTAAAGAGCTTTGAAATGAGTCTAAACACGACTAGGCTCCGCCCATTTTCAGTTTTCGTGGCGAGACCCGAATTTTCAAAAAATTTTTAGAATGTAGTCATGTTTATACTCATTTTGAAGCTCTTAACATTTCAAATCGAACGCATCAAATGTTGTCTTGCTGGCATTAAAACTGACCAAGTTATGGTAGTTTTACCAAAATTCAAGTTATCGTGGTGGGACCCAAAATCCGAAAATAGTCTTTTTTGAAACCTAGTCGTGTTTATACTCATTTGAAAGTCCTTAACAATTAAA</canonical>
            <polymorphic>ACTAATTTGTATAGTGAGCATTGCCACGTGTACATCATCGATTTTCGTTCATCTGGAGAAGTTTGCACTGAGGAATCCTAGTTGGCAGGCGAGCATTTTCTCTAAATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTTTTTAAATTTTCAGAGTGTCCCATGGTACATCCGCTGGCTGGCCGCGAAAAAACTCTTCTGTTGTTACGTTCCAAAATCTTTCCGATACGATAAAGACGCCTATAGTAGGAATAACAATGTACAGGCRATTTCGCTACACTCACACCCGATAGAAATGTTGGCAAGAATTTGATTCCCAAAGAGGTAAGTTTTTAAAAAATTAAATAAATTTTCAAAAAAATATTTTTTTAGATCAATTTCACTGAAGTCAACCAGGATGCACCACTGCATGATGTGCTGGAGGGTCAGTTTTTTAATTCGTTGAAAATTTTATTTAAAATCTGAATTTAGCAGCTAAAGAGCTTTGAAATGAGTCTAAACACGACTAGGCTCCGCCCATTTTCAGTTTTCGTGGCGAGACCCGAATTTTCAAAAAATTTTTAGAATGTAGTCATGTTTATACTCATTTTGAAGCTCTTAACATTTCAAATCGAACGCATCAAATGTTGTCTTGCTGGCATTAAAACTGACCAAGTTATGGTAGTTTTACCAAAATTCAAGTTATCGTGGTGGGACCCAAAATCCGAAAATAGTCTTTTTTGAAACCTAGTCGTGTTTATACTCATTTGAAAGTCCTTAACAATTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTCTTCTGTTGTTACGTTCC</pcr_primer_p1>
		<pcr_primer_p2>GGTTGACTTCAGTGAAATTGAT</pcr_primer_p2>
		<pcr_amplicon_size>203</pcr_amplicon_size>
		<canonical_amplicon>AACTCTTCTGTTGTTACGTTCCAAAATCTTTCCGATACGATAAAGACGCCTATAGTAGGAATAACAATGTACAGGCGATTTCGCTACACTCACACCCGATAGAAATGTTGGCAAGAATTTGATTCCCAAAGAGGTAAGTTTTTAAAAAATTAAATAAATTTTCAAAAAAATATTTTTTTAGATCAATTTCACTGAAGTCAACC</canonical_amplicon>
		<polymorphic_amplicon>AACTCTTCTGTTGTTACGTTCCAAAATCTTTCCGATACGATAAAGACGCCTATAGTAGGAATAACAATGTACAGGCRATTTCGCTACACTCACACCCGATAGAAATGTTGGCAAGAATTTGATTCCCAAAGAGGTAAGTTTTTAAAAAATTAAATAAATTTTCAAAAAAATATTTTTTTAGATCAATTTCACTGAAGTCAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2189</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>137859</contig_pos>
        <strand></strand>
        <context>TTTTTGAAGG[G/A]AGAGTGTCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTCGAGGGAATTCATGGATTTCAAGGGTTTAGGTGGGTTTTTTGAAGG</left_flank>
        <right_flank>AGAGTGTCTTCAAATAGTGTTTTTAACTCATTTTCCCATTTTTGAATTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAGGTTGTTGATGTAGAGTGTGCTGTTCGGCTGGATCTCCTCCATTTCTGGAAATTTTCAGATTTTAAGAAAAGAAAAGGACAATTGGGAGAATAAAAGGAAAAATGTATATTTGAAGGCAATAAACATAAACTTTTTAAGCCTCTAGCTAGTTTCTTCAGCTCATTAATTAGTTTTTTCACCTGAAAAAAAATACACTGTTCGATTTGGACCTTTTCCCCCCATTTTCAACGATTTGTCGTCGAATTTTGGATGTTTTAGAGGTCAAAAATTGTGTCGAAATCGATTTTTTTGGTCTAGAATGTACCAAAACCCGGAAAAATCAAGAAAAACCAATGAAAAGCAGCAAAAATCGTTGAGAAAATACGAAAATTTTATTGTGCGGTGGAGCGCGTTTGCCCCCACGGCCATCGATTTCTAGGCCGCGGCCATTGGGATTTTGAGTAATTTTCGAGGGAATTCATGGATTTCAAGGGTTTAGGTGGGTTTTTTGAAGGGAGAGTGTCTTCAAATAGTGTTTTTAACTCATTTTCCCATTTTTGAATTTTTTTCGATCTGCAAGTAGCCTGATTTTCGGCCGAAATTTATTTTGTTGTATGAAAAATGTATTCTTTTTAGCTTGGCTAATTTTTTTTTAAATTTTACTTTATTTCAGCGAAGAATGTAAAGGTTTCTCTCATTTCTTTTCAGCGAAAAATGTGAAGGTTTCTCTCATTTCTGCGAATTTCAGCACTTGAAAAACATGAGAGCACACCAACTGGGAGGAAAAGAAAAATTAGGAAGAACCATCTGGGAGGAAAAATGGGCGGAGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>TTGAGGTTGTTGATGTAGAGTGTGCTGTTCGGCTGGATCTCCTCCATTTCTGGAAATTTTCAGATTTTAAGAAAAGAAAAGGACAATTGGGAGAATAAAAGGAAAAATGTATATTTGAAGGCAATAAACATAAACTTTTTAAGCCTCTAGCTAGTTTCTTCAGCTCATTAATTAGTTTTTTCACCTGAAAAAAAATACACTGTTCGATTTGGACCTTTTCCCCCCATTTTCAACGATTTGTCGTCGAATTTTGGATGTTTTAGAGGTCAAAAATTGTGTCGAAATCGATTTTTTTGGTCTAGAATGTACCAAAACCCGGAAAAATCAAGAAAAACCAATGAAAAGCAGCAAAAATCGTTGAGAAAATACGAAAATTTTATTGTGCGGTGGAGCGCGTTTGCCCCCACGGCCATCGATTTCTAGGCCGCGGCCATTGGGATTTTGAGTAATTTTCGAGGGAATTCATGGATTTCAAGGGTTTAGGTGGGTTTTTTGAAGGRAGAGTGTCTTCAAATAGTGTTTTTAACTCATTTTCCCATTTTTGAATTTTTTTCGATCTGCAAGTAGCCTGATTTTCGGCCGAAATTTATTTTGTTGTATGAAAAATGTATTCTTTTTAGCTTGGCTAATTTTTTTTTAAATTTTACTTTATTTCAGCGAAGAATGTAAAGGTTTCTCTCATTTCTTTTCAGCGAAAAATGTGAAGGTTTCTCTCATTTCTGCGAATTTCAGCACTTGAAAAACATGAGAGCACACCAACTGGGAGGAAAAGAAAAATTAGGAAGAACCATCTGGGAGGAAAAATGGGCGGAGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTGGGATTTTGAGTAATTTT</pcr_primer_p1>
		<pcr_primer_p2>TGAGAGAAACCTTTACATTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTGGGATTTTGAGTAATTTTCGAGGGAATTCATGGATTTCAAGGGTTTAGGTGGGTTTTTTGAAGGGAGAGTGTCTTCAAATAGTGTTTTTAACTCATTTTCCCATTTTTGAATTTTTTTCGATCTGCAAGTAGCCTGATTTTCGGCCGAAATTTATTTTGTTGTATGAAAAATGTATTCTTTTTAGCTTGGCTAATTTTTTTTTAAATTTTACTTTATTTCAGCGAAGAATGTAAAGGTTTCTCTCA</canonical_amplicon>
		<polymorphic_amplicon>CATTGGGATTTTGAGTAATTTTCGAGGGAATTCATGGATTTCAAGGGTTTAGGTGGGTTTTTTGAAGGRAGAGTGTCTTCAAATAGTGTTTTTAACTCATTTTCCCATTTTTGAATTTTTTTCGATCTGCAAGTAGCCTGATTTTCGGCCGAAATTTATTTTGTTGTATGAAAAATGTATTCTTTTTAGCTTGGCTAATTTTTTTTTAAATTTTACTTTATTTCAGCGAAGAATGTAAAGGTTTCTCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2190</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>137879</contig_pos>
        <strand></strand>
        <context>TCAAATAGTG[T/C]TTTTAACTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTCAAGGGTTTAGGTGGGTTTTTTGAAGGGAGAGTGTCTTCAAATAGTG</left_flank>
        <right_flank>TTTTAACTCATTTTCCCATTTTTGAATTTTTTTCGATCTGCAAGTAGCCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGCTGTTCGGCTGGATCTCCTCCATTTCTGGAAATTTTCAGATTTTAAGAAAAGAAAAGGACAATTGGGAGAATAAAAGGAAAAATGTATATTTGAAGGCAATAAACATAAACTTTTTAAGCCTCTAGCTAGTTTCTTCAGCTCATTAATTAGTTTTTTCACCTGAAAAAAAATACACTGTTCGATTTGGACCTTTTCCCCCCATTTTCAACGATTTGTCGTCGAATTTTGGATGTTTTAGAGGTCAAAAATTGTGTCGAAATCGATTTTTTTGGTCTAGAATGTACCAAAACCCGGAAAAATCAAGAAAAACCAATGAAAAGCAGCAAAAATCGTTGAGAAAATACGAAAATTTTATTGTGCGGTGGAGCGCGTTTGCCCCCACGGCCATCGATTTCTAGGCCGCGGCCATTGGGATTTTGAGTAATTTTCGAGGGAATTCATGGATTTCAAGGGTTTAGGTGGGTTTTTTGAAGGGAGAGTGTCTTCAAATAGTGTTTTTAACTCATTTTCCCATTTTTGAATTTTTTTCGATCTGCAAGTAGCCTGATTTTCGGCCGAAATTTATTTTGTTGTATGAAAAATGTATTCTTTTTAGCTTGGCTAATTTTTTTTTAAATTTTACTTTATTTCAGCGAAGAATGTAAAGGTTTCTCTCATTTCTTTTCAGCGAAAAATGTGAAGGTTTCTCTCATTTCTGCGAATTTCAGCACTTGAAAAACATGAGAGCACACCAACTGGGAGGAAAAGAAAAATTAGGAAGAACCATCTGGGAGGAAAAATGGGCGGAGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>TGTGCTGTTCGGCTGGATCTCCTCCATTTCTGGAAATTTTCAGATTTTAAGAAAAGAAAAGGACAATTGGGAGAATAAAAGGAAAAATGTATATTTGAAGGCAATAAACATAAACTTTTTAAGCCTCTAGCTAGTTTCTTCAGCTCATTAATTAGTTTTTTCACCTGAAAAAAAATACACTGTTCGATTTGGACCTTTTCCCCCCATTTTCAACGATTTGTCGTCGAATTTTGGATGTTTTAGAGGTCAAAAATTGTGTCGAAATCGATTTTTTTGGTCTAGAATGTACCAAAACCCGGAAAAATCAAGAAAAACCAATGAAAAGCAGCAAAAATCGTTGAGAAAATACGAAAATTTTATTGTGCGGTGGAGCGCGTTTGCCCCCACGGCCATCGATTTCTAGGCCGCGGCCATTGGGATTTTGAGTAATTTTCGAGGGAATTCATGGATTTCAAGGGTTTAGGTGGGTTTTTTGAAGGGAGAGTGTCTTCAAATAGTGYTTTTAACTCATTTTCCCATTTTTGAATTTTTTTCGATCTGCAAGTAGCCTGATTTTCGGCCGAAATTTATTTTGTTGTATGAAAAATGTATTCTTTTTAGCTTGGCTAATTTTTTTTTAAATTTTACTTTATTTCAGCGAAGAATGTAAAGGTTTCTCTCATTTCTTTTCAGCGAAAAATGTGAAGGTTTCTCTCATTTCTGCGAATTTCAGCACTTGAAAAACATGAGAGCACACCAACTGGGAGGAAAAGAAAAATTAGGAAGAACCATCTGGGAGGAAAAATGGGCGGAGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTGGGATTTTGAGTAATTTT</pcr_primer_p1>
		<pcr_primer_p2>TGAGAGAAACCTTTACATTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTGGGATTTTGAGTAATTTTCGAGGGAATTCATGGATTTCAAGGGTTTAGGTGGGTTTTTTGAAGGGAGAGTGTCTTCAAATAGTGTTTTTAACTCATTTTCCCATTTTTGAATTTTTTTCGATCTGCAAGTAGCCTGATTTTCGGCCGAAATTTATTTTGTTGTATGAAAAATGTATTCTTTTTAGCTTGGCTAATTTTTTTTTAAATTTTACTTTATTTCAGCGAAGAATGTAAAGGTTTCTCTCA</canonical_amplicon>
		<polymorphic_amplicon>CATTGGGATTTTGAGTAATTTTCGAGGGAATTCATGGATTTCAAGGGTTTAGGTGGGTTTTTTGAAGGGAGAGTGTCTTCAAATAGTGYTTTTAACTCATTTTCCCATTTTTGAATTTTTTTCGATCTGCAAGTAGCCTGATTTTCGGCCGAAATTTATTTTGTTGTATGAAAAATGTATTCTTTTTAGCTTGGCTAATTTTTTTTTAAATTTTACTTTATTTCAGCGAAGAATGTAAAGGTTTCTCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2191</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>137925</contig_pos>
        <strand></strand>
        <context>ATCTGCAAGT[A/T]GCCTGATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTGTTTTTAACTCATTTTCCCATTTTTGAATTTTTTTCGATCTGCAAGT</left_flank>
        <right_flank>GCCTGATTTTCGGCCGAAATTTATTTTGTTGTATGAAAAATGTATTCTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAAGAAAAGAAAAGGACAATTGGGAGAATAAAAGGAAAAATGTATATTTGAAGGCAATAAACATAAACTTTTTAAGCCTCTAGCTAGTTTCTTCAGCTCATTAATTAGTTTTTTCACCTGAAAAAAAATACACTGTTCGATTTGGACCTTTTCCCCCCATTTTCAACGATTTGTCGTCGAATTTTGGATGTTTTAGAGGTCAAAAATTGTGTCGAAATCGATTTTTTTGGTCTAGAATGTACCAAAACCCGGAAAAATCAAGAAAAACCAATGAAAAGCAGCAAAAATCGTTGAGAAAATACGAAAATTTTATTGTGCGGTGGAGCGCGTTTGCCCCCACGGCCATCGATTTCTAGGCCGCGGCCATTGGGATTTTGAGTAATTTTCGAGGGAATTCATGGATTTCAAGGGTTTAGGTGGGTTTTTTGAAGGGAGAGTGTCTTCAAATAGTGTTTTTAACTCATTTTCCCATTTTTGAATTTTTTTCGATCTGCAAGTAGCCTGATTTTCGGCCGAAATTTATTTTGTTGTATGAAAAATGTATTCTTTTTAGCTTGGCTAATTTTTTTTTAAATTTTACTTTATTTCAGCGAAGAATGTAAAGGTTTCTCTCATTTCTTTTCAGCGAAAAATGTGAAGGTTTCTCTCATTTCTGCGAATTTCAGCACTTGAAAAACATGAGAGCACACCAACTGGGAGGAAAAGAAAAATTAGGAAGAACCATCTGGGAGGAAAAATGGGCGGAGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>TTAAGAAAAGAAAAGGACAATTGGGAGAATAAAAGGAAAAATGTATATTTGAAGGCAATAAACATAAACTTTTTAAGCCTCTAGCTAGTTTCTTCAGCTCATTAATTAGTTTTTTCACCTGAAAAAAAATACACTGTTCGATTTGGACCTTTTCCCCCCATTTTCAACGATTTGTCGTCGAATTTTGGATGTTTTAGAGGTCAAAAATTGTGTCGAAATCGATTTTTTTGGTCTAGAATGTACCAAAACCCGGAAAAATCAAGAAAAACCAATGAAAAGCAGCAAAAATCGTTGAGAAAATACGAAAATTTTATTGTGCGGTGGAGCGCGTTTGCCCCCACGGCCATCGATTTCTAGGCCGCGGCCATTGGGATTTTGAGTAATTTTCGAGGGAATTCATGGATTTCAAGGGTTTAGGTGGGTTTTTTGAAGGGAGAGTGTCTTCAAATAGTGTTTTTAACTCATTTTCCCATTTTTGAATTTTTTTCGATCTGCAAGTWGCCTGATTTTCGGCCGAAATTTATTTTGTTGTATGAAAAATGTATTCTTTTTAGCTTGGCTAATTTTTTTTTAAATTTTACTTTATTTCAGCGAAGAATGTAAAGGTTTCTCTCATTTCTTTTCAGCGAAAAATGTGAAGGTTTCTCTCATTTCTGCGAATTTCAGCACTTGAAAAACATGAGAGCACACCAACTGGGAGGAAAAGAAAAATTAGGAAGAACCATCTGGGAGGAAAAATGGGCGGAGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>253 246 188 137 77 41 15 13 12 7 6 5</canonical_bands>
                <polymorphic_bands>253 246 188 149 77 41 15 13 7 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTGGGATTTTGAGTAATTTT</pcr_primer_p1>
		<pcr_primer_p2>TGAGAGAAACCTTTACATTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTGGGATTTTGAGTAATTTTCGAGGGAATTCATGGATTTCAAGGGTTTAGGTGGGTTTTTTGAAGGGAGAGTGTCTTCAAATAGTGTTTTTAACTCATTTTCCCATTTTTGAATTTTTTTCGATCTGCAAGTAGCCTGATTTTCGGCCGAAATTTATTTTGTTGTATGAAAAATGTATTCTTTTTAGCTTGGCTAATTTTTTTTTAAATTTTACTTTATTTCAGCGAAGAATGTAAAGGTTTCTCTCA</canonical_amplicon>
		<polymorphic_amplicon>CATTGGGATTTTGAGTAATTTTCGAGGGAATTCATGGATTTCAAGGGTTTAGGTGGGTTTTTTGAAGGGAGAGTGTCTTCAAATAGTGTTTTTAACTCATTTTCCCATTTTTGAATTTTTTTCGATCTGCAAGTWGCCTGATTTTCGGCCGAAATTTATTTTGTTGTATGAAAAATGTATTCTTTTTAGCTTGGCTAATTTTTTTTTAAATTTTACTTTATTTCAGCGAAGAATGTAAAGGTTTCTCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2192</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>137943</contig_pos>
        <strand></strand>
        <context>TTTCGGCCGA[A/T]ATTTATTTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCCATTTTTGAATTTTTTTCGATCTGCAAGTAGCCTGATTTTCGGCCGA</left_flank>
        <right_flank>ATTTATTTTGTTGTATGAAAAATGTATTCTTTTTAGCTTGGCTAATTTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGGGAGAATAAAAGGAAAAATGTATATTTGAAGGCAATAAACATAAACTTTTTAAGCCTCTAGCTAGTTTCTTCAGCTCATTAATTAGTTTTTTCACCTGAAAAAAAATACACTGTTCGATTTGGACCTTTTCCCCCCATTTTCAACGATTTGTCGTCGAATTTTGGATGTTTTAGAGGTCAAAAATTGTGTCGAAATCGATTTTTTTGGTCTAGAATGTACCAAAACCCGGAAAAATCAAGAAAAACCAATGAAAAGCAGCAAAAATCGTTGAGAAAATACGAAAATTTTATTGTGCGGTGGAGCGCGTTTGCCCCCACGGCCATCGATTTCTAGGCCGCGGCCATTGGGATTTTGAGTAATTTTCGAGGGAATTCATGGATTTCAAGGGTTTAGGTGGGTTTTTTGAAGGGAGAGTGTCTTCAAATAGTGTTTTTAACTCATTTTCCCATTTTTGAATTTTTTTCGATCTGCAAGTAGCCTGATTTTCGGCCGAAATTTATTTTGTTGTATGAAAAATGTATTCTTTTTAGCTTGGCTAATTTTTTTTTAAATTTTACTTTATTTCAGCGAAGAATGTAAAGGTTTCTCTCATTTCTTTTCAGCGAAAAATGTGAAGGTTTCTCTCATTTCTGCGAATTTCAGCACTTGAAAAACATGAGAGCACACCAACTGGGAGGAAAAGAAAAATTAGGAAGAACCATCTGGGAGGAAAAATGGGCGGAGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>AATTGGGAGAATAAAAGGAAAAATGTATATTTGAAGGCAATAAACATAAACTTTTTAAGCCTCTAGCTAGTTTCTTCAGCTCATTAATTAGTTTTTTCACCTGAAAAAAAATACACTGTTCGATTTGGACCTTTTCCCCCCATTTTCAACGATTTGTCGTCGAATTTTGGATGTTTTAGAGGTCAAAAATTGTGTCGAAATCGATTTTTTTGGTCTAGAATGTACCAAAACCCGGAAAAATCAAGAAAAACCAATGAAAAGCAGCAAAAATCGTTGAGAAAATACGAAAATTTTATTGTGCGGTGGAGCGCGTTTGCCCCCACGGCCATCGATTTCTAGGCCGCGGCCATTGGGATTTTGAGTAATTTTCGAGGGAATTCATGGATTTCAAGGGTTTAGGTGGGTTTTTTGAAGGGAGAGTGTCTTCAAATAGTGTTTTTAACTCATTTTCCCATTTTTGAATTTTTTTCGATCTGCAAGTAGCCTGATTTTCGGCCGAWATTTATTTTGTTGTATGAAAAATGTATTCTTTTTAGCTTGGCTAATTTTTTTTTAAATTTTACTTTATTTCAGCGAAGAATGTAAAGGTTTCTCTCATTTCTTTTCAGCGAAAAATGTGAAGGTTTCTCTCATTTCTGCGAATTTCAGCACTTGAAAAACATGAGAGCACACCAACTGGGAGGAAAAGAAAAATTAGGAAGAACCATCTGGGAGGAAAAATGGGCGGAGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>360 162 126 87 85 85 56 39</canonical_bands>
                <polymorphic_bands>360 162 126 95 87 85 85</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>309 101 85 85 85 77 75 51 44 39 25 12 12 0</canonical_bands>
                <polymorphic_bands>309 101 85 85 85 83 77 75 51 25 12 12 0</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTGGGATTTTGAGTAATTTT</pcr_primer_p1>
		<pcr_primer_p2>TGAGAGAAACCTTTACATTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTGGGATTTTGAGTAATTTTCGAGGGAATTCATGGATTTCAAGGGTTTAGGTGGGTTTTTTGAAGGGAGAGTGTCTTCAAATAGTGTTTTTAACTCATTTTCCCATTTTTGAATTTTTTTCGATCTGCAAGTAGCCTGATTTTCGGCCGAAATTTATTTTGTTGTATGAAAAATGTATTCTTTTTAGCTTGGCTAATTTTTTTTTAAATTTTACTTTATTTCAGCGAAGAATGTAAAGGTTTCTCTCA</canonical_amplicon>
		<polymorphic_amplicon>CATTGGGATTTTGAGTAATTTTCGAGGGAATTCATGGATTTCAAGGGTTTAGGTGGGTTTTTTGAAGGGAGAGTGTCTTCAAATAGTGTTTTTAACTCATTTTCCCATTTTTGAATTTTTTTCGATCTGCAAGTAGCCTGATTTTCGGCCGAWATTTATTTTGTTGTATGAAAAATGTATTCTTTTTAGCTTGGCTAATTTTTTTTTAAATTTTACTTTATTTCAGCGAAGAATGTAAAGGTTTCTCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2195</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>187913</contig_pos>
        <strand>+</strand>
        <context>TCTAATTATC[C/T]TAATTAGGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCTCAAAAAAAATGTTTTTTTCAAAAATTAATTTTCCCTCTAATTATC</left_flank>
        <right_flank>TAATTAGGCTCTTAACTTTCAATTTTTTGGATTTTTTTTTCAATTTTTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCAGAATTTTATGATAAATTTGAAATAAAATCACAACTCAATGAAAATCTATGTCTACGGACTTATTTTGCAGCCGTAACATCTGTCGACGCACCTCCACCGCTCTACACCGACATTGGCAAAGACCTGGGACCATTCGGATTCCGAACGACGCCTTCTGGCGCCCGACCCGTCGGAATTCATAGAAGCTTCCAGAATCAACATCATCTGACGACGCCTACAGTACAACCATTGAATATACAGTATTTGTATCCGCCAAAATATGAGGTGAGCAATTTTTCAAAAATTATTTCAATTGTCATTCTAAAAAAAAAGTTTTTTGGTCCCTAAAAACTTCTTTTTTTTTGAAAAAAATGTCAAAAGTTCTTAAAGAATATAAGAAAATACTAAATTATTCATTCTCATATACTTCTTCCTCCTACGCTAGCTCAAAAGTTCAAATTTTTGAATTCTCAAAAAAAATGTTTTTTTCAAAAATTAATTTTCCCTCTAATTATCTTAATTAGGCTCTTAACTTTCAATTTTTTGGATTTTTTTTTCAATTTTTTTCCATAAAAGTACATCTGTCTCCAGATGTTTCTTGTTTCGGAGAAGTTCCTAGAATTTATAAAAATTGCAAACTCTAGCATTTATAATTATAGAAATTGAGGAAGAAGAAGCTCACACGATGTGTGAGCTCTTATTATAGACAGGAGCCTGACTTTTAAAAATGTCAGAATTTTTAAATTATAGTTCCTGGAAAATTTTTTGAAATTAAAAAAAAATTAAAATTTTTTTTTTTAAATTTCAATAATACATTTTCAGAGTAAAACTAAGGTCTAAAATTATTAGAAAACAGTTTTAGAACGTTTAGAAAATCTGAAAATCCAAAAAAAAAAATTTTTTTTCGAAAATTATTTTTTTTCAAAATTTTCAGCCAAAAAATGTTTTTTTTCCAGGCCACAATTTCCTCACCTGAAACCAAAATCTTGCCACCATCATCTGAAACTACAGTAACCC</canonical>
            <polymorphic>ACCAGAATTTTATGATAAATTTGAAATAAAATCACAACTCAATGAAAATCTATGTCTACGGACTTATTTTGCAGCCGTAACATCTGTCGACGCACCTCCACCGCTCTACACCGACATTGGCAAAGACCTGGGACCATTCGGATTCCGAACGACGCCTTCTGGCGCCCGACCCGTCGGAATTCATAGAAGCTTCCAGAATCAACATCATCTGACGACGCCTACAGTACAACCATTGAATATACAGTATTTGTATCCGCCAAAATATGAGGTGAGCAATTTTTCAAAAATTATTTCAATTGTCATTCTAAAAAAAAAGTTTTTTGGTCCCTAAAAACTTCTTTTTTTTTGAAAAAAATGTCAAAAGTTCTTAAAGAATATAAGAAAATACTAAATTATTCATTCTCATATACTTCTTCCTCCTACGCTAGCTCAAAAGTTCAAATTTTTGAATTCTCAAAAAAAATGTTTTTTTCAAAAATTAATTTTCCCTCTAATTATCYTAATTAGGCTCTTAACTTTCAATTTTTTGGATTTTTTTTTCAATTTTTTTCCATAAAAGTACATCTGTCTCCAGATGTTTCTTGTTTCGGAGAAGTTCCTAGAATTTATAAAAATTGCAAACTCTAGCATTTATAATTATAGAAATTGAGGAAGAAGAAGCTCACACGATGTGTGAGCTCTTATTATAGACAGGAGCCTGACTTTTAAAAATGTCAGAATTTTTAAATTATAGTTCCTGGAAAATTTTTTGAAATTAAAAAAAAATTAAAATTTTTTTTTTTAAATTTCAATAATACATTTTCAGAGTAAAACTAAGGTCTAAAATTATTAGAAAACAGTTTTAGAACGTTTAGAAAATCTGAAAATCCAAAAAAAAAAATTTTTTTTCGAAAATTATTTTTTTTCAAAATTTTCAGCCAAAAAATGTTTTTTTTCCAGGCCACAATTTCCTCACCTGAAACCAAAATCTTGCCACCATCATCTGAAACTACAGTAACCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>368 219 193 111 32 21 18 15 12 11</canonical_bands>
                <polymorphic_bands>368 219 193 111 33 32 18 15 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCCTACGCTAGCTCAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GCTTCTTCTTCCTCAATTTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTCCTACGCTAGCTCAAAAGTTCAAATTTTTGAATTCTCAAAAAAAATGTTTTTTTCAAAAATTAATTTTCCCTCTAATTATCTTAATTAGGCTCTTAACTTTCAATTTTTTGGATTTTTTTTTCAATTTTTTTCCATAAAAGTACATCTGTCTCCAGATGTTTCTTGTTTCGGAGAAGTTCCTAGAATTTATAAAAATTGCAAACTCTAGCATTTATAATTATAGAAATTGAGGAAGAAGAAGC</canonical_amplicon>
		<polymorphic_amplicon>CTCCTACGCTAGCTCAAAAGTTCAAATTTTTGAATTCTCAAAAAAAATGTTTTTTTCAAAAATTAATTTTCCCTCTAATTATCYTAATTAGGCTCTTAACTTTCAATTTTTTGGATTTTTTTTTCAATTTTTTTCCATAAAAGTACATCTGTCTCCAGATGTTTCTTGTTTCGGAGAAGTTCCTAGAATTTATAAAAATTGCAAACTCTAGCATTTATAATTATAGAAATTGAGGAAGAAGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2196</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>188099</contig_pos>
        <strand>+</strand>
        <context>AGCTCTTATT[A/C]TAGACAGGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTATAGAAATTGAGGAAGAAGAAGCTCACACGATGTGTGAGCTCTTATT</left_flank>
        <right_flank>TAGACAGGAGCCTGACTTTTAAAAATGTCAGAATTTTTAAATTATAGTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCTTCCAGAATCAACATCATCTGACGACGCCTACAGTACAACCATTGAATATACAGTATTTGTATCCGCCAAAATATGAGGTGAGCAATTTTTCAAAAATTATTTCAATTGTCATTCTAAAAAAAAAGTTTTTTGGTCCCTAAAAACTTCTTTTTTTTTGAAAAAAATGTCAAAAGTTCTTAAAGAATATAAGAAAATACTAAATTATTCATTCTCATATACTTCTTCCTCCTACGCTAGCTCAAAAGTTCAAATTTTTGAATTCTCAAAAAAAATGTTTTTTTCAAAAATTAATTTTCCCTCTAATTATCTTAATTAGGCTCTTAACTTTCAATTTTTTGGATTTTTTTTTCAATTTTTTTCCATAAAAGTACATCTGTCTCCAGATGTTTCTTGTTTCGGAGAAGTTCCTAGAATTTATAAAAATTGCAAACTCTAGCATTTATAATTATAGAAATTGAGGAAGAAGAAGCTCACACGATGTGTGAGCTCTTATTATAGACAGGAGCCTGACTTTTAAAAATGTCAGAATTTTTAAATTATAGTTCCTGGAAAATTTTTTGAAATTAAAAAAAAATTAAAATTTTTTTTTTTAAATTTCAATAATACATTTTCAGAGTAAAACTAAGGTCTAAAATTATTAGAAAACAGTTTTAGAACGTTTAGAAAATCTGAAAATCCAAAAAAAAAAATTTTTTTTCGAAAATTATTTTTTTTCAAAATTTTCAGCCAAAAAATGTTTTTTTTCCAGGCCACAATTTCCTCACCTGAAACCAAAATCTTGCCACCATCATCTGAAACTACAGTAACCCGAAACACTTCTCGCGTTGAACACGTCGTTGTGGAAATCGGAGGCGCCACCACGTCATCTGAAAGCTGAAAATCTGAAAATCTGAAATTTGTTGCCTCTCATACTCATATCATTTTCCCCCGGGTCCATTTAAACCAATTTTTATCATTAAAATTTTTGAAAAAAAAAACAAAACAGGTATTTTTTA</canonical>
            <polymorphic>AAGCTTCCAGAATCAACATCATCTGACGACGCCTACAGTACAACCATTGAATATACAGTATTTGTATCCGCCAAAATATGAGGTGAGCAATTTTTCAAAAATTATTTCAATTGTCATTCTAAAAAAAAAGTTTTTTGGTCCCTAAAAACTTCTTTTTTTTTGAAAAAAATGTCAAAAGTTCTTAAAGAATATAAGAAAATACTAAATTATTCATTCTCATATACTTCTTCCTCCTACGCTAGCTCAAAAGTTCAAATTTTTGAATTCTCAAAAAAAATGTTTTTTTCAAAAATTAATTTTCCCTCTAATTATCTTAATTAGGCTCTTAACTTTCAATTTTTTGGATTTTTTTTTCAATTTTTTTCCATAAAAGTACATCTGTCTCCAGATGTTTCTTGTTTCGGAGAAGTTCCTAGAATTTATAAAAATTGCAAACTCTAGCATTTATAATTATAGAAATTGAGGAAGAAGAAGCTCACACGATGTGTGAGCTCTTATTMTAGACAGGAGCCTGACTTTTAAAAATGTCAGAATTTTTAAATTATAGTTCCTGGAAAATTTTTTGAAATTAAAAAAAAATTAAAATTTTTTTTTTTAAATTTCAATAATACATTTTCAGAGTAAAACTAAGGTCTAAAATTATTAGAAAACAGTTTTAGAACGTTTAGAAAATCTGAAAATCCAAAAAAAAAAATTTTTTTTCGAAAATTATTTTTTTTCAAAATTTTCAGCCAAAAAATGTTTTTTTTCCAGGCCACAATTTCCTCACCTGAAACCAAAATCTTGCCACCATCATCTGAAACTACAGTAACCCGAAACACTTCTCGCGTTGAACACGTCGTTGTGGAAATCGGAGGCGCCACCACGTCATCTGAAAGCTGAAAATCTGAAAATCTGAAATTTGTTGCCTCTCATACTCATATCATTTTCCCCCGGGTCCATTTAAACCAATTTTTATCATTAAAATTTTTGAAAAAAAAAACAAAACAGGTATTTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTATAAAAATTGCAAACTCTAGC</pcr_primer_p1>
		<pcr_primer_p2>TTTCAGGTGAGGAAATTGTG</pcr_primer_p2>
		<pcr_amplicon_size>357</pcr_amplicon_size>
		<canonical_amplicon>TTTATAAAAATTGCAAACTCTAGCATTTATAATTATAGAAATTGAGGAAGAAGAAGCTCACACGATGTGTGAGCTCTTATTATAGACAGGAGCCTGACTTTTAAAAATGTCAGAATTTTTAAATTATAGTTCCTGGAAAATTTTTTGAAATTAAAAAAAAATTAAAATTTTTTTTTTTAAATTTCAATAATACATTTTCAGAGTAAAACTAAGGTCTAAAATTATTAGAAAACAGTTTTAGAACGTTTAGAAAATCTGAAAATCCAAAAAAAAAAATTTTTTTTCGAAAATTATTTTTTTTCAAAATTTTCAGCCAAAAAATGTTTTTTTTCCAGGCCACAATTTCCTCACCTGAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTATAAAAATTGCAAACTCTAGCATTTATAATTATAGAAATTGAGGAAGAAGAAGCTCACACGATGTGTGAGCTCTTATTMTAGACAGGAGCCTGACTTTTAAAAATGTCAGAATTTTTAAATTATAGTTCCTGGAAAATTTTTTGAAATTAAAAAAAAATTAAAATTTTTTTTTTTAAATTTCAATAATACATTTTCAGAGTAAAACTAAGGTCTAAAATTATTAGAAAACAGTTTTAGAACGTTTAGAAAATCTGAAAATCCAAAAAAAAAAATTTTTTTTCGAAAATTATTTTTTTTCAAAATTTTCAGCCAAAAAATGTTTTTTTTCCAGGCCACAATTTCCTCACCTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2197</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>188256</contig_pos>
        <strand></strand>
        <context>aaaacagttt[T/C]agaacgttta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATACATTTTCAGAGTAAAACTAAGGTCTAAAATTATTAGAAAACAGTTT</left_flank>
        <right_flank>AGAACGTTTAGAAAATCTGAAAATCCAAAAAAAAAAATTTTTTTTCGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGAAAAAAATGTCAAAAGTTCTTAAAGAATATAAGAAAATACTAAATTATTCATTCTCATATACTTCTTCCTCCTACGCTAGCTCAAAAGTTCAAATTTTTGAATTCTCAAAAAAAATGTTTTTTTCAAAAATTAATTTTCCCTCTAATTATCTTAATTAGGCTCTTAACTTTCAATTTTTTGGATTTTTTTTTCAATTTTTTTCCATAAAAGTACATCTGTCTCCAGATGTTTCTTGTTTCGGAGAAGTTCCTAGAATTTATAAAAATTGCAAACTCTAGCATTTATAATTATAGAAATTGAGGAAGAAGAAGCTCACACGATGTGTGAGCTCTTATTATAGACAGGAGCCTGACTTTTAAAAATGTCAGAATTTTTAAATTATAGTTCCTGGAAAATTTTTTGAAATTAAAAAAAAATTAAAATTTTTTTTTTTAAATTTCAATAATACATTTTCAGAGTAAAACTAAGGTCTAAAATTATTAGAAAACAGTTTTAGAACGTTTAGAAAATCTGAAAATCCAAAAAAAAAAATTTTTTTTCGAAAATTATTTTTTTTCAAAATTTTCAGCCAAAAAATGTTTTTTTTCCAGGCCACAATTTCCTCACCTGAAACCAAAATCTTGCCACCATCATCTGAAACTACAGTAACCCGAAACACTTCTCGCGTTGAACACGTCGTTGTGGAAATCGGAGGCGCCACCACGTCATCTGAAAGCTGAAAATCTGAAAATCTGAAATTTGTTGCCTCTCATACTCATATCATTTTCCCCCGGGTCCATTTAAACCAATTTTTATCATTAAAATTTTTGAAAAAAAAAACAAAACAGGTATTTTTTAATTTTTTGTAATTTTTCAATTTTTTAAAGACAATCTAGCTAAATTAGCTGAAATTTTGAGTATTTTTTGTGTTGTTATAGCTTTAATTTTCTCTAATAAATGAAATTTTTCTATTTGCTCTTAAAATTCCAAATAAAATTCGAAAAACTTTTTTTTT</canonical>
            <polymorphic>TTTTGAAAAAAATGTCAAAAGTTCTTAAAGAATATAAGAAAATACTAAATTATTCATTCTCATATACTTCTTCCTCCTACGCTAGCTCAAAAGTTCAAATTTTTGAATTCTCAAAAAAAATGTTTTTTTCAAAAATTAATTTTCCCTCTAATTATCTTAATTAGGCTCTTAACTTTCAATTTTTTGGATTTTTTTTTCAATTTTTTTCCATAAAAGTACATCTGTCTCCAGATGTTTCTTGTTTCGGAGAAGTTCCTAGAATTTATAAAAATTGCAAACTCTAGCATTTATAATTATAGAAATTGAGGAAGAAGAAGCTCACACGATGTGTGAGCTCTTATTATAGACAGGAGCCTGACTTTTAAAAATGTCAGAATTTTTAAATTATAGTTCCTGGAAAATTTTTTGAAATTAAAAAAAAATTAAAATTTTTTTTTTTAAATTTCAATAATACATTTTCAGAGTAAAACTAAGGTCTAAAATTATTAGAAAACAGTTTYAGAACGTTTAGAAAATCTGAAAATCCAAAAAAAAAAATTTTTTTTCGAAAATTATTTTTTTTCAAAATTTTCAGCCAAAAAATGTTTTTTTTCCAGGCCACAATTTCCTCACCTGAAACCAAAATCTTGCCACCATCATCTGAAACTACAGTAACCCGAAACACTTCTCGCGTTGAACACGTCGTTGTGGAAATCGGAGGCGCCACCACGTCATCTGAAAGCTGAAAATCTGAAAATCTGAAATTTGTTGCCTCTCATACTCATATCATTTTCCCCCGGGTCCATTTAAACCAATTTTTATCATTAAAATTTTTGAAAAAAAAAACAAAACAGGTATTTTTTAATTTTTTGTAATTTTTCAATTTTTTAAAGACAATCTAGCTAAATTAGCTGAAATTTTGAGTATTTTTTGTGTTGTTATAGCTTTAATTTTCTCTAATAAATGAAATTTTTCTATTTGCTCTTAAAATTCCAAATAAAATTCGAAAAACTTTTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCAGAATTTTTAAATTATAGTTCC</pcr_primer_p1>
		<pcr_primer_p2>TTTCAGGTGAGGAAATTGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTCAGAATTTTTAAATTATAGTTCCTGGAAAATTTTTTGAAATTAAAAAAAAATTAAAATTTTTTTTTTTAAATTTCAATAATACATTTTCAGAGTAAAACTAAGGTCTAAAATTATTAGAAAACAGTTTTAGAACGTTTAGAAAATCTGAAAATCCAAAAAAAAAAATTTTTTTTCGAAAATTATTTTTTTTCAAAATTTTCAGCCAAAAAATGTTTTTTTTCCAGGCCACAATTTCCTCACCTGAAA</canonical_amplicon>
		<polymorphic_amplicon>TGTCAGAATTTTTAAATTATAGTTCCTGGAAAATTTTTTGAAATTAAAAAAAAATTAAAATTTTTTTTTTTAAATTTCAATAATACATTTTCAGAGTAAAACTAAGGTCTAAAATTATTAGAAAACAGTTTYAGAACGTTTAGAAAATCTGAAAATCCAAAAAAAAAAATTTTTTTTCGAAAATTATTTTTTTTCAAAATTTTCAGCCAAAAAATGTTTTTTTTCCAGGCCACAATTTCCTCACCTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2198</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>189196</contig_pos>
        <strand></strand>
        <context>caattaatat[T/G]mgtttgtagt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAATCCAATTAATAT</left_flank>
        <right_flank>CGTTTGTAGTTTTTTTTTTGTTCTATTGTATCCAATTTAGATGACTTAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATGAAATTTTTCTATTTGCTCTTAAAATTCCAAATAAAATTCGAAAAACTTTTTTTTTTCGAACAGGTGAAATTATTTAATTTTTTGTCCCAAATTCTATAGAATTAGCATGTCTGGACTATTGTTTTTTGATATTTTAATTATGCCAGTTCTTTGAAAATTTGTAATTTAAAAAAATATATGAAGTTTTGAATCTGTACCTTGTCTATGAACAAAGTTATGACCCCTAAAGCTCTAACCGCGTAGCTTGGTTGGTTTTTGGTTTATAACTTTGTTTGTAGGCAAGATACAGTGACCCAAATAATATTATTTTGTAGTTTTCTTCTTGTTCTACCGTATCCAATTTAGTTAATTTAAAAATATAAATTTTGAAGAAAGTTATGGGCTTAATAGCTAGCTGAAGGTTTGAAGCATATTAAGGTAAATGCCTACTATTAGGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAATCCAATTAATATTCGTTTGTAGTTTTTTTTTTGTTCTATTGTATCCAATTTAGATGACTTAAAAATATAAATTATGAAAGAAGTTATGGGCCCTAGTTGAAGTTGGCTTAGGAAGGTTAAGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAAGACAACTAGTATCGCTTTGTAGTGCTCTTCAAATTCTATCATATTTATGTTAATTGATTCAAAAATATCCATTCTGAAACGAATTAAGACAGGGCCCGTTTTCATCATAAAGCCTGTAATAGAAGAGACCTCACACAATAAAGGTCGAGCTCAATTATCTTGGGCCCGAATGAAAGATATAAAAAAGCCTTGAAAATTTCCGTAAACTGGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGTAAAAAAGTAATCAACTGATAAAACTGATAAAACGTGAAAATGTCCCTGTGAGACCATTGAAACAAAAAAAAAGATCCCTGGGATCTTCAAAGA</canonical>
            <polymorphic>AAATGAAATTTTTCTATTTGCTCTTAAAATTCCAAATAAAATTCGAAAAACTTTTTTTTTTCGAACAGGTGAAATTATTTAATTTTTTGTCCCAAATTCTATAGAATTAGCATGTCTGGACTATTGTTTTTTGATATTTTAATTATGCCAGTTCTTTGAAAATTTGTAATTTAAAAAAATATATGAAGTTTTGAATCTGTACCTTGTCTATGAACAAAGTTATGACCCCTAAAGCTCTAACCGCGTAGCTTGGTTGGTTTTTGGTTTATAACTTTGTTTGTAGGCAAGATACAGTGACCCAAATAATATTATTTTGTAGTTTTCTTCTTGTTCTACCGTATCCAATTTAGTTAATTTAAAAATATAAATTTTGAAGAAAGTTATGGGCTTAATAGCTAGCTGAAGGTTTGAAGCATATTAAGGTAAATGCCTACTATTAGGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAATCCAATTAATATKCGTTTGTAGTTTTTTTTTTGTTCTATTGTATCCAATTTAGATGACTTAAAAATATAAATTATGAAAGAAGTTATGGGCCCTAGTTGAAGTTGGCTTAGGAAGGTTAAGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAAGACAACTAGTATCGCTTTGTAGTGCTCTTCAAATTCTATCATATTTATGTTAATTGATTCAAAAATATCCATTCTGAAACGAATTAAGACAGGGCCCGTTTTCATCATAAAGCCTGTAATAGAAGAGACCTCACACAATAAAGGTCGAGCTCAATTATCTTGGGCCCGAATGAAAGATATAAAAAAGCCTTGAAAATTTCCGTAAACTGGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGTAAAAAAGTAATCAACTGATAAAACTGATAAAACGTGAAAATGTCCCTGTGAGACCATTGAAACAAAAAAAAAGATCCCTGGGATCTTCAAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 307 190</canonical_bands>
                <polymorphic_bands>693 307</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATAGCTAGCTGAAGGTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>AGCCTAAGCTTAACCTTCCTAA</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>TAATAGCTAGCTGAAGGTTTGAAGCATATTAAGGTAAATGCCTACTATTAGGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAATCCAATTAATATTCGTTTGTAGTTTTTTTTTTGTTCTATTGTATCCAATTTAGATGACTTAAAAATATAAATTATGAAAGAAGTTATGGGCCCTAGTTGAAGTTGGCTTAGGAAGGTTAAGCTTAGGCT</canonical_amplicon>
		<polymorphic_amplicon>TAATAGCTAGCTGAAGGTTTGAAGCATATTAAGGTAAATGCCTACTATTAGGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAATCCAATTAATATKCGTTTGTAGTTTTTTTTTTGTTCTATTGTATCCAATTTAGATGACTTAAAAATATAAATTATGAAAGAAGTTATGGGCCCTAGTTGAAGTTGGCTTAGGAAGGTTAAGCTTAGGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2199</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>189197</contig_pos>
        <strand></strand>
        <context>aattaatatk[C/A]gtttgtagtt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AAGCTCTATAACTTTGGTCATAAACAAGATACAGTAATCCAATTAATATT</left_flank>
        <right_flank>GTTTGTAGTTTTTTTTTTGTTCTATTGTATCCAATTTAGATGACTTAAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGAAATTTTTCTATTTGCTCTTAAAATTCCAAATAAAATTCGAAAAACTTTTTTTTTTCGAACAGGTGAAATTATTTAATTTTTTGTCCCAAATTCTATAGAATTAGCATGTCTGGACTATTGTTTTTTGATATTTTAATTATGCCAGTTCTTTGAAAATTTGTAATTTAAAAAAATATATGAAGTTTTGAATCTGTACCTTGTCTATGAACAAAGTTATGACCCCTAAAGCTCTAACCGCGTAGCTTGGTTGGTTTTTGGTTTATAACTTTGTTTGTAGGCAAGATACAGTGACCCAAATAATATTATTTTGTAGTTTTCTTCTTGTTCTACCGTATCCAATTTAGTTAATTTAAAAATATAAATTTTGAAGAAAGTTATGGGCTTAATAGCTAGCTGAAGGTTTGAAGCATATTAAGGTAAATGCCTACTATTAGGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAATCCAATTAATATTCGTTTGTAGTTTTTTTTTTGTTCTATTGTATCCAATTTAGATGACTTAAAAATATAAATTATGAAAGAAGTTATGGGCCCTAGTTGAAGTTGGCTTAGGAAGGTTAAGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAAGACAACTAGTATCGCTTTGTAGTGCTCTTCAAATTCTATCATATTTATGTTAATTGATTCAAAAATATCCATTCTGAAACGAATTAAGACAGGGCCCGTTTTCATCATAAAGCCTGTAATAGAAGAGACCTCACACAATAAAGGTCGAGCTCAATTATCTTGGGCCCGAATGAAAGATATAAAAAAGCCTTGAAAATTTCCGTAAACTGGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGTAAAAAAGTAATCAACTGATAAAACTGATAAAACGTGAAAATGTCCCTGTGAGACCATTGAAACAAAAAAAAAGATCCCTGGGATCTTCAAAGAC</canonical>
            <polymorphic>AATGAAATTTTTCTATTTGCTCTTAAAATTCCAAATAAAATTCGAAAAACTTTTTTTTTTCGAACAGGTGAAATTATTTAATTTTTTGTCCCAAATTCTATAGAATTAGCATGTCTGGACTATTGTTTTTTGATATTTTAATTATGCCAGTTCTTTGAAAATTTGTAATTTAAAAAAATATATGAAGTTTTGAATCTGTACCTTGTCTATGAACAAAGTTATGACCCCTAAAGCTCTAACCGCGTAGCTTGGTTGGTTTTTGGTTTATAACTTTGTTTGTAGGCAAGATACAGTGACCCAAATAATATTATTTTGTAGTTTTCTTCTTGTTCTACCGTATCCAATTTAGTTAATTTAAAAATATAAATTTTGAAGAAAGTTATGGGCTTAATAGCTAGCTGAAGGTTTGAAGCATATTAAGGTAAATGCCTACTATTAGGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAATCCAATTAATATTMGTTTGTAGTTTTTTTTTTGTTCTATTGTATCCAATTTAGATGACTTAAAAATATAAATTATGAAAGAAGTTATGGGCCCTAGTTGAAGTTGGCTTAGGAAGGTTAAGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAAGACAACTAGTATCGCTTTGTAGTGCTCTTCAAATTCTATCATATTTATGTTAATTGATTCAAAAATATCCATTCTGAAACGAATTAAGACAGGGCCCGTTTTCATCATAAAGCCTGTAATAGAAGAGACCTCACACAATAAAGGTCGAGCTCAATTATCTTGGGCCCGAATGAAAGATATAAAAAAGCCTTGAAAATTTCCGTAAACTGGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGTAAAAAAGTAATCAACTGATAAAACTGATAAAACGTGAAAATGTCCCTGTGAGACCATTGAAACAAAAAAAAAGATCCCTGGGATCTTCAAAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATAGCTAGCTGAAGGTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>AGCCTAAGCTTAACCTTCCTAA</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>TAATAGCTAGCTGAAGGTTTGAAGCATATTAAGGTAAATGCCTACTATTAGGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAATCCAATTAATATTCGTTTGTAGTTTTTTTTTTGTTCTATTGTATCCAATTTAGATGACTTAAAAATATAAATTATGAAAGAAGTTATGGGCCCTAGTTGAAGTTGGCTTAGGAAGGTTAAGCTTAGGCT</canonical_amplicon>
		<polymorphic_amplicon>TAATAGCTAGCTGAAGGTTTGAAGCATATTAAGGTAAATGCCTACTATTAGGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAATCCAATTAATATTMGTTTGTAGTTTTTTTTTTGTTCTATTGTATCCAATTTAGATGACTTAAAAATATAAATTATGAAAGAAGTTATGGGCCCTAGTTGAAGTTGGCTTAGGAAGGTTAAGCTTAGGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2200</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>189365</contig_pos>
        <strand></strand>
        <context>actagtatcg[C/T]tttgtagkgc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCTCTATAACTTTGGTCATAAACAAGATACAGTAAGACAACTAGTATCG</left_flank>
        <right_flank>TTTGTAGTGCTCTTCAAATTCTATCATATTTATGTTAATTGATTCAAAAA</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAAAAAAATATATGAAGTTTTGAATCTGTACCTTGTCTATGAACAAAGTTATGACCCCTAAAGCTCTAACCGCGTAGCTTGGTTGGTTTTTGGTTTATAACTTTGTTTGTAGGCAAGATACAGTGACCCAAATAATATTATTTTGTAGTTTTCTTCTTGTTCTACCGTATCCAATTTAGTTAATTTAAAAATATAAATTTTGAAGAAAGTTATGGGCTTAATAGCTAGCTGAAGGTTTGAAGCATATTAAGGTAAATGCCTACTATTAGGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAATCCAATTAATATTCGTTTGTAGTTTTTTTTTTGTTCTATTGTATCCAATTTAGATGACTTAAAAATATAAATTATGAAAGAAGTTATGGGCCCTAGTTGAAGTTGGCTTAGGAAGGTTAAGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAAGACAACTAGTATCGCTTTGTAGTGCTCTTCAAATTCTATCATATTTATGTTAATTGATTCAAAAATATCCATTCTGAAACGAATTAAGACAGGGCCCGTTTTCATCATAAAGCCTGTAATAGAAGAGACCTCACACAATAAAGGTCGAGCTCAATTATCTTGGGCCCGAATGAAAGATATAAAAAAGCCTTGAAAATTTCCGTAAACTGGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGTAAAAAAGTAATCAACTGATAAAACTGATAAAACGTGAAAATGTCCCTGTGAGACCATTGAAACAAAAAAAAAGATCCCTGGGATCTTCAAAGACTACATCAACGTGGCAGCATTTTCTTGCTGGTGTAATTAATAGATTTATGTTATTACAATACGCTCCGGGAGGGTGGTCTAGGCGACCACACTACATACAAATCGGCTGTTTCGTTGATCAAGGATCCACAGGTGGATAGGGACTATAGTTTAGGGGGACATCGAGTAC</canonical>
            <polymorphic>TTTAAAAAAATATATGAAGTTTTGAATCTGTACCTTGTCTATGAACAAAGTTATGACCCCTAAAGCTCTAACCGCGTAGCTTGGTTGGTTTTTGGTTTATAACTTTGTTTGTAGGCAAGATACAGTGACCCAAATAATATTATTTTGTAGTTTTCTTCTTGTTCTACCGTATCCAATTTAGTTAATTTAAAAATATAAATTTTGAAGAAAGTTATGGGCTTAATAGCTAGCTGAAGGTTTGAAGCATATTAAGGTAAATGCCTACTATTAGGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAATCCAATTAATATTCGTTTGTAGTTTTTTTTTTGTTCTATTGTATCCAATTTAGATGACTTAAAAATATAAATTATGAAAGAAGTTATGGGCCCTAGTTGAAGTTGGCTTAGGAAGGTTAAGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAAGACAACTAGTATCGYTTTGTAGTGCTCTTCAAATTCTATCATATTTATGTTAATTGATTCAAAAATATCCATTCTGAAACGAATTAAGACAGGGCCCGTTTTCATCATAAAGCCTGTAATAGAAGAGACCTCACACAATAAAGGTCGAGCTCAATTATCTTGGGCCCGAATGAAAGATATAAAAAAGCCTTGAAAATTTCCGTAAACTGGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGTAAAAAAGTAATCAACTGATAAAACTGATAAAACGTGAAAATGTCCCTGTGAGACCATTGAAACAAAAAAAAAGATCCCTGGGATCTTCAAAGACTACATCAACGTGGCAGCATTTTCTTGCTGGTGTAATTAATAGATTTATGTTATTACAATACGCTCCGGGAGGGTGGTCTAGGCGACCACACTACATACAAATCGGCTGTTTCGTTGATCAAGGATCCACAGGTGGATAGGGACTATAGTTTAGGGGGACATCGAGTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTGGCTTAGGAAGGTTAAG</pcr_primer_p1>
		<pcr_primer_p2>CAGTTTACGGAAATTTTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>AAGTTGGCTTAGGAAGGTTAAGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAAGACAACTAGTATCGCTTTGTAGTGCTCTTCAAATTCTATCATATTTATGTTAATTGATTCAAAAATATCCATTCTGAAACGAATTAAGACAGGGCCCGTTTTCATCATAAAGCCTGTAATAGAAGAGACCTCACACAATAAAGGTCGAGCTCAATTATCTTGGGCCCGAATGAAAGATATAAAAAAGCCTTGAAAATTTCCGTAAACTG</canonical_amplicon>
		<polymorphic_amplicon>AAGTTGGCTTAGGAAGGTTAAGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAAGACAACTAGTATCGYTTTGTAGTGCTCTTCAAATTCTATCATATTTATGTTAATTGATTCAAAAATATCCATTCTGAAACGAATTAAGACAGGGCCCGTTTTCATCATAAAGCCTGTAATAGAAGAGACCTCACACAATAAAGGTCGAGCTCAATTATCTTGGGCCCGAATGAAAGATATAAAAAAGCCTTGAAAATTTCCGTAAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2201</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>189394</contig_pos>
        <strand></strand>
        <context>ttctatcata[T/C]ttrtgttaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACAGTAAGACAACTAGTATCGCTTTGTAGTGCTCTTCAAATTCTATCATA</left_flank>
        <right_flank>TTATGTTAATTGATTCAAAAATATCCATTCTGAAACGAATTAAGACAGGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACCTTGTCTATGAACAAAGTTATGACCCCTAAAGCTCTAACCGCGTAGCTTGGTTGGTTTTTGGTTTATAACTTTGTTTGTAGGCAAGATACAGTGACCCAAATAATATTATTTTGTAGTTTTCTTCTTGTTCTACCGTATCCAATTTAGTTAATTTAAAAATATAAATTTTGAAGAAAGTTATGGGCTTAATAGCTAGCTGAAGGTTTGAAGCATATTAAGGTAAATGCCTACTATTAGGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAATCCAATTAATATTCGTTTGTAGTTTTTTTTTTGTTCTATTGTATCCAATTTAGATGACTTAAAAATATAAATTATGAAAGAAGTTATGGGCCCTAGTTGAAGTTGGCTTAGGAAGGTTAAGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAAGACAACTAGTATCGCTTTGTAGTGCTCTTCAAATTCTATCATATTTATGTTAATTGATTCAAAAATATCCATTCTGAAACGAATTAAGACAGGGCCCGTTTTCATCATAAAGCCTGTAATAGAAGAGACCTCACACAATAAAGGTCGAGCTCAATTATCTTGGGCCCGAATGAAAGATATAAAAAAGCCTTGAAAATTTCCGTAAACTGGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGTAAAAAAGTAATCAACTGATAAAACTGATAAAACGTGAAAATGTCCCTGTGAGACCATTGAAACAAAAAAAAAGATCCCTGGGATCTTCAAAGACTACATCAACGTGGCAGCATTTTCTTGCTGGTGTAATTAATAGATTTATGTTATTACAATACGCTCCGGGAGGGTGGTCTAGGCGACCACACTACATACAAATCGGCTGTTTCGTTGATCAAGGATCCACAGGTGGATAGGGACTATAGTTTAGGGGGACATCGAGTACGGTAAGGATCATAACATGGGATATAAGGT</canonical>
            <polymorphic>GTACCTTGTCTATGAACAAAGTTATGACCCCTAAAGCTCTAACCGCGTAGCTTGGTTGGTTTTTGGTTTATAACTTTGTTTGTAGGCAAGATACAGTGACCCAAATAATATTATTTTGTAGTTTTCTTCTTGTTCTACCGTATCCAATTTAGTTAATTTAAAAATATAAATTTTGAAGAAAGTTATGGGCTTAATAGCTAGCTGAAGGTTTGAAGCATATTAAGGTAAATGCCTACTATTAGGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAATCCAATTAATATTCGTTTGTAGTTTTTTTTTTGTTCTATTGTATCCAATTTAGATGACTTAAAAATATAAATTATGAAAGAAGTTATGGGCCCTAGTTGAAGTTGGCTTAGGAAGGTTAAGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAAGACAACTAGTATCGCTTTGTAGTGCTCTTCAAATTCTATCATAYTTATGTTAATTGATTCAAAAATATCCATTCTGAAACGAATTAAGACAGGGCCCGTTTTCATCATAAAGCCTGTAATAGAAGAGACCTCACACAATAAAGGTCGAGCTCAATTATCTTGGGCCCGAATGAAAGATATAAAAAAGCCTTGAAAATTTCCGTAAACTGGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGTAAAAAAGTAATCAACTGATAAAACTGATAAAACGTGAAAATGTCCCTGTGAGACCATTGAAACAAAAAAAAAGATCCCTGGGATCTTCAAAGACTACATCAACGTGGCAGCATTTTCTTGCTGGTGTAATTAATAGATTTATGTTATTACAATACGCTCCGGGAGGGTGGTCTAGGCGACCACACTACATACAAATCGGCTGTTTCGTTGATCAAGGATCCACAGGTGGATAGGGACTATAGTTTAGGGGGACATCGAGTACGGTAAGGATCATAACATGGGATATAAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTGGCTTAGGAAGGTTAAG</pcr_primer_p1>
		<pcr_primer_p2>CAGTTTACGGAAATTTTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>AAGTTGGCTTAGGAAGGTTAAGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAAGACAACTAGTATCGCTTTGTAGTGCTCTTCAAATTCTATCATATTTATGTTAATTGATTCAAAAATATCCATTCTGAAACGAATTAAGACAGGGCCCGTTTTCATCATAAAGCCTGTAATAGAAGAGACCTCACACAATAAAGGTCGAGCTCAATTATCTTGGGCCCGAATGAAAGATATAAAAAAGCCTTGAAAATTTCCGTAAACTG</canonical_amplicon>
		<polymorphic_amplicon>AAGTTGGCTTAGGAAGGTTAAGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAAGACAACTAGTATCGCTTTGTAGTGCTCTTCAAATTCTATCATAYTTATGTTAATTGATTCAAAAATATCCATTCTGAAACGAATTAAGACAGGGCCCGTTTTCATCATAAAGCCTGTAATAGAAGAGACCTCACACAATAAAGGTCGAGCTCAATTATCTTGGGCCCGAATGAAAGATATAAAAAAGCCTTGAAAATTTCCGTAAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2202</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>189397</contig_pos>
        <strand></strand>
        <context>tatcataytt[A/G]tgttaattga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAAGACAACTAGTATCGCTTTGTAGTGCTCTTCAAATTCTATCATATTT</left_flank>
        <right_flank>TGTTAATTGATTCAAAAATATCCATTCTGAAACGAATTAAGACAGGGCCC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTGTCTATGAACAAAGTTATGACCCCTAAAGCTCTAACCGCGTAGCTTGGTTGGTTTTTGGTTTATAACTTTGTTTGTAGGCAAGATACAGTGACCCAAATAATATTATTTTGTAGTTTTCTTCTTGTTCTACCGTATCCAATTTAGTTAATTTAAAAATATAAATTTTGAAGAAAGTTATGGGCTTAATAGCTAGCTGAAGGTTTGAAGCATATTAAGGTAAATGCCTACTATTAGGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAATCCAATTAATATTCGTTTGTAGTTTTTTTTTTGTTCTATTGTATCCAATTTAGATGACTTAAAAATATAAATTATGAAAGAAGTTATGGGCCCTAGTTGAAGTTGGCTTAGGAAGGTTAAGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAAGACAACTAGTATCGCTTTGTAGTGCTCTTCAAATTCTATCATATTTATGTTAATTGATTCAAAAATATCCATTCTGAAACGAATTAAGACAGGGCCCGTTTTCATCATAAAGCCTGTAATAGAAGAGACCTCACACAATAAAGGTCGAGCTCAATTATCTTGGGCCCGAATGAAAGATATAAAAAAGCCTTGAAAATTTCCGTAAACTGGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGTAAAAAAGTAATCAACTGATAAAACTGATAAAACGTGAAAATGTCCCTGTGAGACCATTGAAACAAAAAAAAAGATCCCTGGGATCTTCAAAGACTACATCAACGTGGCAGCATTTTCTTGCTGGTGTAATTAATAGATTTATGTTATTACAATACGCTCCGGGAGGGTGGTCTAGGCGACCACACTACATACAAATCGGCTGTTTCGTTGATCAAGGATCCACAGGTGGATAGGGACTATAGTTTAGGGGGACATCGAGTACGGTAAGGATCATAACATGGGATATAAGGTTTT</canonical>
            <polymorphic>CCTTGTCTATGAACAAAGTTATGACCCCTAAAGCTCTAACCGCGTAGCTTGGTTGGTTTTTGGTTTATAACTTTGTTTGTAGGCAAGATACAGTGACCCAAATAATATTATTTTGTAGTTTTCTTCTTGTTCTACCGTATCCAATTTAGTTAATTTAAAAATATAAATTTTGAAGAAAGTTATGGGCTTAATAGCTAGCTGAAGGTTTGAAGCATATTAAGGTAAATGCCTACTATTAGGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAATCCAATTAATATTCGTTTGTAGTTTTTTTTTTGTTCTATTGTATCCAATTTAGATGACTTAAAAATATAAATTATGAAAGAAGTTATGGGCCCTAGTTGAAGTTGGCTTAGGAAGGTTAAGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAAGACAACTAGTATCGCTTTGTAGTGCTCTTCAAATTCTATCATATTTRTGTTAATTGATTCAAAAATATCCATTCTGAAACGAATTAAGACAGGGCCCGTTTTCATCATAAAGCCTGTAATAGAAGAGACCTCACACAATAAAGGTCGAGCTCAATTATCTTGGGCCCGAATGAAAGATATAAAAAAGCCTTGAAAATTTCCGTAAACTGGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGTAAAAAAGTAATCAACTGATAAAACTGATAAAACGTGAAAATGTCCCTGTGAGACCATTGAAACAAAAAAAAAGATCCCTGGGATCTTCAAAGACTACATCAACGTGGCAGCATTTTCTTGCTGGTGTAATTAATAGATTTATGTTATTACAATACGCTCCGGGAGGGTGGTCTAGGCGACCACACTACATACAAATCGGCTGTTTCGTTGATCAAGGATCCACAGGTGGATAGGGACTATAGTTTAGGGGGACATCGAGTACGGTAAGGATCATAACATGGGATATAAGGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>497 310 193</canonical_bands>
                <polymorphic_bands>807 193</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTGGCTTAGGAAGGTTAAG</pcr_primer_p1>
		<pcr_primer_p2>CAGTTTACGGAAATTTTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>AAGTTGGCTTAGGAAGGTTAAGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAAGACAACTAGTATCGCTTTGTAGTGCTCTTCAAATTCTATCATATTTATGTTAATTGATTCAAAAATATCCATTCTGAAACGAATTAAGACAGGGCCCGTTTTCATCATAAAGCCTGTAATAGAAGAGACCTCACACAATAAAGGTCGAGCTCAATTATCTTGGGCCCGAATGAAAGATATAAAAAAGCCTTGAAAATTTCCGTAAACTG</canonical_amplicon>
		<polymorphic_amplicon>AAGTTGGCTTAGGAAGGTTAAGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAAGACAACTAGTATCGCTTTGTAGTGCTCTTCAAATTCTATCATATTTRTGTTAATTGATTCAAAAATATCCATTCTGAAACGAATTAAGACAGGGCCCGTTTTCATCATAAAGCCTGTAATAGAAGAGACCTCACACAATAAAGGTCGAGCTCAATTATCTTGGGCCCGAATGAAAGATATAAAAAAGCCTTGAAAATTTCCGTAAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2210</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>192632</contig_pos>
        <strand>+</strand>
        <context>ATCAAYTTTA[G/T]TTAGCCAAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTAGATTTCAAGAAGAGCTACGCAGTTATATAAAAATCAATCAATTTTA</left_flank>
        <right_flank>TTAGCCAAGCCTTAGTTAGAGACTGCTTAAATTTCGATTTTCGATTCTAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATGGCAAAAATAAATACTCAAATATAGCAAGTCTGTGTTCTACTAATCCTTTTTTGCTCAGGGGGAGCAAGGAAAACAGATTCCCTCGAAACGTTAGGCGAGAGGGAATTAAGTTTTATATCATTTTGTAGAACTTTTCAAGCCCTACGTTTCTATATCAGATTCATATGAAAATATTGATTTTGAAGAAAGTTGTGGGTCGATCAGTGTCCGGTGTATGCATTCGTCACATAGGGATGGTCTCAAGCGGCAACTGTTTTAATCATTCGAATTTTATATCATTTTGTAGGACTTTGAAAATCCTACATTTCTAAATAAATTTCACACAAAAACATTAATTTTGAATAAAGTTACCATGGAATTTACCATCTGGGATCGCACAAATCACACTTTGGCTTGTAGCTCCTCTCAAAATTGTCAGTTTTCCTTGGTCTAAAGTTTATTTTGTAGATTTCAAGAAGAGCTACGCAGTTATATAAAAATCAATCAATTTTAGTTAGCCAAGCCTTAGTTAGAGACTGCTTAAATTTCGATTTTCGATTCTAAAAAACGACGGAAATTGCTTGAAAAGTCTGGAAAGAATTCACAAGAGAATCACATGATTTTCAGCCAAATTTCAGTGTTTTCTTATCAAAAAGTGATCGTTCTTTTTAGAATGTTTTAATATTCGAATTGATAAGAATTTATGGGAAAAATTGTATATATTTTGGGACAAATTTCAGAATGTGAGGTAACAATTCCACTGGAAAAATTCTTTAATTTAAGAACAAATGCATTCAGGGGTCCCAATTTTTTGAATTGAAAAATTATAATAATCCAGTAAAATGTTTTTTTTCTTCAAAATTTCAAAAAGTGATTTTTTAAAAACACTTTAAAGGTTTTTTCCCGTTGACATCACTCTGAAATTTTAGGCGTTCTTTAGGAAAAGTCTACGACATATACAAAAGGCTGAAATTTTCTGATTAAATAGAATTTCAAAAAAGTTCCTTTGACATT</canonical>
            <polymorphic>AAAAATGGCAAAAATAAATACTCAAATATAGCAAGTCTGTGTTCTACTAATCCTTTTTTGCTCAGGGGGAGCAAGGAAAACAGATTCCCTCGAAACGTTAGGCGAGAGGGAATTAAGTTTTATATCATTTTGTAGAACTTTTCAAGCCCTACGTTTCTATATCAGATTCATATGAAAATATTGATTTTGAAGAAAGTTGTGGGTCGATCAGTGTCCGGTGTATGCATTCGTCACATAGGGATGGTCTCAAGCGGCAACTGTTTTAATCATTCGAATTTTATATCATTTTGTAGGACTTTGAAAATCCTACATTTCTAAATAAATTTCACACAAAAACATTAATTTTGAATAAAGTTACCATGGAATTTACCATCTGGGATCGCACAAATCACACTTTGGCTTGTAGCTCCTCTCAAAATTGTCAGTTTTCCTTGGTCTAAAGTTTATTTTGTAGATTTCAAGAAGAGCTACGCAGTTATATAAAAATCAATCAATTTTAKTTAGCCAAGCCTTAGTTAGAGACTGCTTAAATTTCGATTTTCGATTCTAAAAAACGACGGAAATTGCTTGAAAAGTCTGGAAAGAATTCACAAGAGAATCACATGATTTTCAGCCAAATTTCAGTGTTTTCTTATCAAAAAGTGATCGTTCTTTTTAGAATGTTTTAATATTCGAATTGATAAGAATTTATGGGAAAAATTGTATATATTTTGGGACAAATTTCAGAATGTGAGGTAACAATTCCACTGGAAAAATTCTTTAATTTAAGAACAAATGCATTCAGGGGTCCCAATTTTTTGAATTGAAAAATTATAATAATCCAGTAAAATGTTTTTTTTCTTCAAAATTTCAAAAAGTGATTTTTTAAAAACACTTTAAAGGTTTTTTCCCGTTGACATCACTCTGAAATTTTAGGCGTTCTTTAGGAAAAGTCTACGACATATACAAAAGGCTGAAATTTTCTGATTAAATAGAATTTCAAAAAAGTTCCTTTGACATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAGTTTTCCTTGGTCTAAAGT</pcr_primer_p1>
		<pcr_primer_p2>AAACATTCTAAAAAGAACGATCA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GTCAGTTTTCCTTGGTCTAAAGTTTATTTTGTAGATTTCAAGAAGAGCTACGCAGTTATATAAAAATCAATCAATTTTAGTTAGCCAAGCCTTAGTTAGAGACTGCTTAAATTTCGATTTTCGATTCTAAAAAACGACGGAAATTGCTTGAAAAGTCTGGAAAGAATTCACAAGAGAATCACATGATTTTCAGCCAAATTTCAGTGTTTTCTTATCAAAAAGTGATCGTTCTTTTTAGAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GTCAGTTTTCCTTGGTCTAAAGTTTATTTTGTAGATTTCAAGAAGAGCTACGCAGTTATATAAAAATCAATCAATTTTAKTTAGCCAAGCCTTAGTTAGAGACTGCTTAAATTTCGATTTTCGATTCTAAAAAACGACGGAAATTGCTTGAAAAGTCTGGAAAGAATTCACAAGAGAATCACATGATTTTCAGCCAAATTTCAGTGTTTTCTTATCAAAAAGTGATCGTTCTTTTTAGAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2211</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>192627</contig_pos>
        <strand>+</strand>
        <context>AATCAATCAA[C/T]TTTAKTTAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTTTGTAGATTTCAAGAAGAGCTACGCAGTTATATAAAAATCAATCAA</left_flank>
        <right_flank>TTTAGTTAGCCAAGCCTTAGTTAGAGACTGCTTAAATTTCGATTTTCGAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTCTAAAAATGGCAAAAATAAATACTCAAATATAGCAAGTCTGTGTTCTACTAATCCTTTTTTGCTCAGGGGGAGCAAGGAAAACAGATTCCCTCGAAACGTTAGGCGAGAGGGAATTAAGTTTTATATCATTTTGTAGAACTTTTCAAGCCCTACGTTTCTATATCAGATTCATATGAAAATATTGATTTTGAAGAAAGTTGTGGGTCGATCAGTGTCCGGTGTATGCATTCGTCACATAGGGATGGTCTCAAGCGGCAACTGTTTTAATCATTCGAATTTTATATCATTTTGTAGGACTTTGAAAATCCTACATTTCTAAATAAATTTCACACAAAAACATTAATTTTGAATAAAGTTACCATGGAATTTACCATCTGGGATCGCACAAATCACACTTTGGCTTGTAGCTCCTCTCAAAATTGTCAGTTTTCCTTGGTCTAAAGTTTATTTTGTAGATTTCAAGAAGAGCTACGCAGTTATATAAAAATCAATCAATTTTAGTTAGCCAAGCCTTAGTTAGAGACTGCTTAAATTTCGATTTTCGATTCTAAAAAACGACGGAAATTGCTTGAAAAGTCTGGAAAGAATTCACAAGAGAATCACATGATTTTCAGCCAAATTTCAGTGTTTTCTTATCAAAAAGTGATCGTTCTTTTTAGAATGTTTTAATATTCGAATTGATAAGAATTTATGGGAAAAATTGTATATATTTTGGGACAAATTTCAGAATGTGAGGTAACAATTCCACTGGAAAAATTCTTTAATTTAAGAACAAATGCATTCAGGGGTCCCAATTTTTTGAATTGAAAAATTATAATAATCCAGTAAAATGTTTTTTTTCTTCAAAATTTCAAAAAGTGATTTTTTAAAAACACTTTAAAGGTTTTTTCCCGTTGACATCACTCTGAAATTTTAGGCGTTCTTTAGGAAAAGTCTACGACATATACAAAAGGCTGAAATTTTCTGATTAAATAGAATTTCAAAAAAGTTCCTTTG</canonical>
            <polymorphic>CCTCTAAAAATGGCAAAAATAAATACTCAAATATAGCAAGTCTGTGTTCTACTAATCCTTTTTTGCTCAGGGGGAGCAAGGAAAACAGATTCCCTCGAAACGTTAGGCGAGAGGGAATTAAGTTTTATATCATTTTGTAGAACTTTTCAAGCCCTACGTTTCTATATCAGATTCATATGAAAATATTGATTTTGAAGAAAGTTGTGGGTCGATCAGTGTCCGGTGTATGCATTCGTCACATAGGGATGGTCTCAAGCGGCAACTGTTTTAATCATTCGAATTTTATATCATTTTGTAGGACTTTGAAAATCCTACATTTCTAAATAAATTTCACACAAAAACATTAATTTTGAATAAAGTTACCATGGAATTTACCATCTGGGATCGCACAAATCACACTTTGGCTTGTAGCTCCTCTCAAAATTGTCAGTTTTCCTTGGTCTAAAGTTTATTTTGTAGATTTCAAGAAGAGCTACGCAGTTATATAAAAATCAATCAAYTTTAGTTAGCCAAGCCTTAGTTAGAGACTGCTTAAATTTCGATTTTCGATTCTAAAAAACGACGGAAATTGCTTGAAAAGTCTGGAAAGAATTCACAAGAGAATCACATGATTTTCAGCCAAATTTCAGTGTTTTCTTATCAAAAAGTGATCGTTCTTTTTAGAATGTTTTAATATTCGAATTGATAAGAATTTATGGGAAAAATTGTATATATTTTGGGACAAATTTCAGAATGTGAGGTAACAATTCCACTGGAAAAATTCTTTAATTTAAGAACAAATGCATTCAGGGGTCCCAATTTTTTGAATTGAAAAATTATAATAATCCAGTAAAATGTTTTTTTTCTTCAAAATTTCAAAAAGTGATTTTTTAAAAACACTTTAAAGGTTTTTTCCCGTTGACATCACTCTGAAATTTTAGGCGTTCTTTAGGAAAAGTCTACGACATATACAAAAGGCTGAAATTTTCTGATTAAATAGAATTTCAAAAAAGTTCCTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>163 115 76 62 58 53 49 48 37 37 32 32 30 23 23 21 21 21 19 18 14 13 10 9 8 8</canonical_bands>
                <polymorphic_bands>163 115 113 62 58 53 49 48 37 32 32 30 23 23 21 21 21 19 18 14 13 10 9 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCAGTTTTCCTTGGTCTAAAGT</pcr_primer_p1>
		<pcr_primer_p2>AAACATTCTAAAAAGAACGATCA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GTCAGTTTTCCTTGGTCTAAAGTTTATTTTGTAGATTTCAAGAAGAGCTACGCAGTTATATAAAAATCAATCAATTTTAGTTAGCCAAGCCTTAGTTAGAGACTGCTTAAATTTCGATTTTCGATTCTAAAAAACGACGGAAATTGCTTGAAAAGTCTGGAAAGAATTCACAAGAGAATCACATGATTTTCAGCCAAATTTCAGTGTTTTCTTATCAAAAAGTGATCGTTCTTTTTAGAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GTCAGTTTTCCTTGGTCTAAAGTTTATTTTGTAGATTTCAAGAAGAGCTACGCAGTTATATAAAAATCAATCAAYTTTAGTTAGCCAAGCCTTAGTTAGAGACTGCTTAAATTTCGATTTTCGATTCTAAAAAACGACGGAAATTGCTTGAAAAGTCTGGAAAGAATTCACAAGAGAATCACATGATTTTCAGCCAAATTTCAGTGTTTTCTTATCAAAAAGTGATCGTTCTTTTTAGAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2212</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>192505</contig_pos>
        <strand>+</strand>
        <context>GAATTTACCA[C/T]CTGGGATCGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTCACACAAAAACATTAATTTTGAATAAAGTTACCATGGAATTTACCA</left_flank>
        <right_flank>CTGGGATCGCACAAATCACACTTTGGCTTGTAGCTCCTCTCAAAATTGTC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTTTTAATTGTTGTGTTCTACTTACCCCCAGTACCAATACTTACCAATACGAGTATACTGTACAATCACGTGTATTATCATTACGAGTTTGTAACTTTCAAGCTTAAGCTTCAGCTTACACCTCTAAAAATGGCAAAAATAAATACTCAAATATAGCAAGTCTGTGTTCTACTAATCCTTTTTTGCTCAGGGGGAGCAAGGAAAACAGATTCCCTCGAAACGTTAGGCGAGAGGGAATTAAGTTTTATATCATTTTGTAGAACTTTTCAAGCCCTACGTTTCTATATCAGATTCATATGAAAATATTGATTTTGAAGAAAGTTGTGGGTCGATCAGTGTCCGGTGTATGCATTCGTCACATAGGGATGGTCTCAAGCGGCAACTGTTTTAATCATTCGAATTTTATATCATTTTGTAGGACTTTGAAAATCCTACATTTCTAAATAAATTTCACACAAAAACATTAATTTTGAATAAAGTTACCATGGAATTTACCATCTGGGATCGCACAAATCACACTTTGGCTTGTAGCTCCTCTCAAAATTGTCAGTTTTCCTTGGTCTAAAGTTTATTTTGTAGATTTCAAGAAGAGCTACGCAGTTATATAAAAATCAATCAATTTTAGTTAGCCAAGCCTTAGTTAGAGACTGCTTAAATTTCGATTTTCGATTCTAAAAAACGACGGAAATTGCTTGAAAAGTCTGGAAAGAATTCACAAGAGAATCACATGATTTTCAGCCAAATTTCAGTGTTTTCTTATCAAAAAGTGATCGTTCTTTTTAGAATGTTTTAATATTCGAATTGATAAGAATTTATGGGAAAAATTGTATATATTTTGGGACAAATTTCAGAATGTGAGGTAACAATTCCACTGGAAAAATTCTTTAATTTAAGAACAAATGCATTCAGGGGTCCCAATTTTTTGAATTGAAAAATTATAATAATCCAGTAAAATGTTTTTTTTCTTCAAAATTTCAAAAAGTGATTTTTTAAAAACA</canonical>
            <polymorphic>AGTTTTTAATTGTTGTGTTCTACTTACCCCCAGTACCAATACTTACCAATACGAGTATACTGTACAATCACGTGTATTATCATTACGAGTTTGTAACTTTCAAGCTTAAGCTTCAGCTTACACCTCTAAAAATGGCAAAAATAAATACTCAAATATAGCAAGTCTGTGTTCTACTAATCCTTTTTTGCTCAGGGGGAGCAAGGAAAACAGATTCCCTCGAAACGTTAGGCGAGAGGGAATTAAGTTTTATATCATTTTGTAGAACTTTTCAAGCCCTACGTTTCTATATCAGATTCATATGAAAATATTGATTTTGAAGAAAGTTGTGGGTCGATCAGTGTCCGGTGTATGCATTCGTCACATAGGGATGGTCTCAAGCGGCAACTGTTTTAATCATTCGAATTTTATATCATTTTGTAGGACTTTGAAAATCCTACATTTCTAAATAAATTTCACACAAAAACATTAATTTTGAATAAAGTTACCATGGAATTTACCAYCTGGGATCGCACAAATCACACTTTGGCTTGTAGCTCCTCTCAAAATTGTCAGTTTTCCTTGGTCTAAAGTTTATTTTGTAGATTTCAAGAAGAGCTACGCAGTTATATAAAAATCAATCAATTTTAGTTAGCCAAGCCTTAGTTAGAGACTGCTTAAATTTCGATTTTCGATTCTAAAAAACGACGGAAATTGCTTGAAAAGTCTGGAAAGAATTCACAAGAGAATCACATGATTTTCAGCCAAATTTCAGTGTTTTCTTATCAAAAAGTGATCGTTCTTTTTAGAATGTTTTAATATTCGAATTGATAAGAATTTATGGGAAAAATTGTATATATTTTGGGACAAATTTCAGAATGTGAGGTAACAATTCCACTGGAAAAATTCTTTAATTTAAGAACAAATGCATTCAGGGGTCCCAATTTTTTGAATTGAAAAATTATAATAATCCAGTAAAATGTTTTTTTTCTTCAAAATTTCAAAAAGTGATTTTTTAAAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCACATAGGGATGGTCTCA</pcr_primer_p1>
		<pcr_primer_p2>ATATAACTGCGTAGCTCTTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GTCACATAGGGATGGTCTCAAGCGGCAACTGTTTTAATCATTCGAATTTTATATCATTTTGTAGGACTTTGAAAATCCTACATTTCTAAATAAATTTCACACAAAAACATTAATTTTGAATAAAGTTACCATGGAATTTACCATCTGGGATCGCACAAATCACACTTTGGCTTGTAGCTCCTCTCAAAATTGTCAGTTTTCCTTGGTCTAAAGTTTATTTTGTAGATTTCAAGAAGAGCTACGCAGTTATAT</canonical_amplicon>
		<polymorphic_amplicon>GTCACATAGGGATGGTCTCAAGCGGCAACTGTTTTAATCATTCGAATTTTATATCATTTTGTAGGACTTTGAAAATCCTACATTTCTAAATAAATTTCACACAAAAACATTAATTTTGAATAAAGTTACCATGGAATTTACCAYCTGGGATCGCACAAATCACACTTTGGCTTGTAGCTCCTCTCAAAATTGTCAGTTTTCCTTGGTCTAAAGTTTATTTTGTAGATTTCAAGAAGAGCTACGCAGTTATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2213</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>192484</contig_pos>
        <strand></strand>
        <context>attttgaata[A/T]agttaCCATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATCCTACATTTCTAAATAAATTTCACACAAAAACATTAATTTTGAATA</left_flank>
        <right_flank>AGTTACCATGGAATTTACCATCTGGGATCGCACAAATCACACTTTGGCTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCATTAATTCAATTGTGACTAGTTTTTAATTGTTGTGTTCTACTTACCCCCAGTACCAATACTTACCAATACGAGTATACTGTACAATCACGTGTATTATCATTACGAGTTTGTAACTTTCAAGCTTAAGCTTCAGCTTACACCTCTAAAAATGGCAAAAATAAATACTCAAATATAGCAAGTCTGTGTTCTACTAATCCTTTTTTGCTCAGGGGGAGCAAGGAAAACAGATTCCCTCGAAACGTTAGGCGAGAGGGAATTAAGTTTTATATCATTTTGTAGAACTTTTCAAGCCCTACGTTTCTATATCAGATTCATATGAAAATATTGATTTTGAAGAAAGTTGTGGGTCGATCAGTGTCCGGTGTATGCATTCGTCACATAGGGATGGTCTCAAGCGGCAACTGTTTTAATCATTCGAATTTTATATCATTTTGTAGGACTTTGAAAATCCTACATTTCTAAATAAATTTCACACAAAAACATTAATTTTGAATAAAGTTACCATGGAATTTACCATCTGGGATCGCACAAATCACACTTTGGCTTGTAGCTCCTCTCAAAATTGTCAGTTTTCCTTGGTCTAAAGTTTATTTTGTAGATTTCAAGAAGAGCTACGCAGTTATATAAAAATCAATCAATTTTAGTTAGCCAAGCCTTAGTTAGAGACTGCTTAAATTTCGATTTTCGATTCTAAAAAACGACGGAAATTGCTTGAAAAGTCTGGAAAGAATTCACAAGAGAATCACATGATTTTCAGCCAAATTTCAGTGTTTTCTTATCAAAAAGTGATCGTTCTTTTTAGAATGTTTTAATATTCGAATTGATAAGAATTTATGGGAAAAATTGTATATATTTTGGGACAAATTTCAGAATGTGAGGTAACAATTCCACTGGAAAAATTCTTTAATTTAAGAACAAATGCATTCAGGGGTCCCAATTTTTTGAATTGAAAAATTATAATAATCCAGTAAAATGTTTTTTTTCTTCAAAATTTCA</canonical>
            <polymorphic>TTCATTAATTCAATTGTGACTAGTTTTTAATTGTTGTGTTCTACTTACCCCCAGTACCAATACTTACCAATACGAGTATACTGTACAATCACGTGTATTATCATTACGAGTTTGTAACTTTCAAGCTTAAGCTTCAGCTTACACCTCTAAAAATGGCAAAAATAAATACTCAAATATAGCAAGTCTGTGTTCTACTAATCCTTTTTTGCTCAGGGGGAGCAAGGAAAACAGATTCCCTCGAAACGTTAGGCGAGAGGGAATTAAGTTTTATATCATTTTGTAGAACTTTTCAAGCCCTACGTTTCTATATCAGATTCATATGAAAATATTGATTTTGAAGAAAGTTGTGGGTCGATCAGTGTCCGGTGTATGCATTCGTCACATAGGGATGGTCTCAAGCGGCAACTGTTTTAATCATTCGAATTTTATATCATTTTGTAGGACTTTGAAAATCCTACATTTCTAAATAAATTTCACACAAAAACATTAATTTTGAATAWAGTTACCATGGAATTTACCATCTGGGATCGCACAAATCACACTTTGGCTTGTAGCTCCTCTCAAAATTGTCAGTTTTCCTTGGTCTAAAGTTTATTTTGTAGATTTCAAGAAGAGCTACGCAGTTATATAAAAATCAATCAATTTTAGTTAGCCAAGCCTTAGTTAGAGACTGCTTAAATTTCGATTTTCGATTCTAAAAAACGACGGAAATTGCTTGAAAAGTCTGGAAAGAATTCACAAGAGAATCACATGATTTTCAGCCAAATTTCAGTGTTTTCTTATCAAAAAGTGATCGTTCTTTTTAGAATGTTTTAATATTCGAATTGATAAGAATTTATGGGAAAAATTGTATATATTTTGGGACAAATTTCAGAATGTGAGGTAACAATTCCACTGGAAAAATTCTTTAATTTAAGAACAAATGCATTCAGGGGTCCCAATTTTTTGAATTGAAAAATTATAATAATCCAGTAAAATGTTTTTTTTCTTCAAAATTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCACATAGGGATGGTCTCA</pcr_primer_p1>
		<pcr_primer_p2>ATATAACTGCGTAGCTCTTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GTCACATAGGGATGGTCTCAAGCGGCAACTGTTTTAATCATTCGAATTTTATATCATTTTGTAGGACTTTGAAAATCCTACATTTCTAAATAAATTTCACACAAAAACATTAATTTTGAATAAAGTTACCATGGAATTTACCATCTGGGATCGCACAAATCACACTTTGGCTTGTAGCTCCTCTCAAAATTGTCAGTTTTCCTTGGTCTAAAGTTTATTTTGTAGATTTCAAGAAGAGCTACGCAGTTATAT</canonical_amplicon>
		<polymorphic_amplicon>GTCACATAGGGATGGTCTCAAGCGGCAACTGTTTTAATCATTCGAATTTTATATCATTTTGTAGGACTTTGAAAATCCTACATTTCTAAATAAATTTCACACAAAAACATTAATTTTGAATAWAGTTACCATGGAATTTACCATCTGGGATCGCACAAATCACACTTTGGCTTGTAGCTCCTCTCAAAATTGTCAGTTTTCCTTGGTCTAAAGTTTATTTTGTAGATTTCAAGAAGAGCTACGCAGTTATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2242</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>225743</contig_pos>
        <strand></strand>
        <context>agcttaagcc[A/T]aacgtaagcc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCC</left_flank>
        <right_flank>AACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGTCTTAATTCCTTTCAAAATGAATATTTTTGAATCAATTAAAACAAATATGATAGAATTTAAAGAGCACTACAAAACGATACTAGTTGTCTTACGGTATCTTGTCTATGAACAAAGTTGTAGAGCTTAAGCCTAAGCTTAACCTTCCTAAGCCTACGCTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTTAATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCAAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCACCTATACAGGTAAAACCTCGAAAAAAAACGGGTCAAAAAAGAATGTTGTTGTACAGATCTTCTCATAGAAGCTATTTTATTCAACACAGAGTGAGAATGTATGAGGAGAGGGGGTGATATACATCCACCCCACTTTTTTTTCTCCTTGTTCTCTTCTATTCCGAAAAAATAACCGGTTTCTATCCTGAAGCAGAAGAATAGTGTCTCTAATTTCCCGTTGTCTAGGGATATGAATGACATAGAAACACTTTGAGCTCAATTTACTCGATTCCTGTGAAAGATATCAAAAATCTGTCAACTGATAAAATGTTAAGGAGTT</canonical>
            <polymorphic>CCTGTCTTAATTCCTTTCAAAATGAATATTTTTGAATCAATTAAAACAAATATGATAGAATTTAAAGAGCACTACAAAACGATACTAGTTGTCTTACGGTATCTTGTCTATGAACAAAGTTGTAGAGCTTAAGCCTAAGCTTAACCTTCCTAAGCCTACGCTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTTAATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCWAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCACCTATACAGGTAAAACCTCGAAAAAAAACGGGTCAAAAAAGAATGTTGTTGTACAGATCTTCTCATAGAAGCTATTTTATTCAACACAGAGTGAGAATGTATGAGGAGAGGGGGTGATATACATCCACCCCACTTTTTTTTCTCCTTGTTCTCTTCTATTCCGAAAAAATAACCGGTTTCTATCCTGAAGCAGAAGAATAGTGTCTCTAATTTCCCGTTGTCTAGGGATATGAATGACATAGAAACACTTTGAGCTCAATTTACTCGATTCCTGTGAAAGATATCAAAAATCTGTCAACTGATAAAATGTTAAGGAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTAGCCTTCAGCTAGCTATT</pcr_primer_p1>
		<pcr_primer_p2>TGCTCTTGTCCTGAAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>521</pcr_amplicon_size>
		<canonical_amplicon>CTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTTAATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCAAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCA</canonical_amplicon>
		<polymorphic_amplicon>CTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTTAATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCWAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2243</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>225879</contig_pos>
        <strand></strand>
        <context>caattcaaaa[A/G]taytattttg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAA</left_flank>
        <right_flank>TACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCACCTAT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCTTAACCTTCCTAAGCCTACGCTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTTAATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCAAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCACCTATACAGGTAAAACCTCGAAAAAAAACGGGTCAAAAAAGAATGTTGTTGTACAGATCTTCTCATAGAAGCTATTTTATTCAACACAGAGTGAGAATGTATGAGGAGAGGGGGTGATATACATCCACCCCACTTTTTTTTCTCCTTGTTCTCTTCTATTCCGAAAAAATAACCGGTTTCTATCCTGAAGCAGAAGAATAGTGTCTCTAATTTCCCGTTGTCTAGGGATATGAATGACATAGAAACACTTTGAGCTCAATTTACTCGATTCCTGTGAAAGATATCAAAAATCTGTCAACTGATAAAATGTTAAGGAGTTTATGATAAAAATTGTATTAGTTGGCCACTTTTTGATATCTTTCACAGAAATCGAGATAATAGAGCATAAAGTAGAATTATGTCAAGCTCGAATGTTGACCTTATATGGCTAATCTAGTTGAACCAGGCAAATTGAA</canonical>
            <polymorphic>AAGCTTAACCTTCCTAAGCCTACGCTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTTAATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCAAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAARTACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCACCTATACAGGTAAAACCTCGAAAAAAAACGGGTCAAAAAAGAATGTTGTTGTACAGATCTTCTCATAGAAGCTATTTTATTCAACACAGAGTGAGAATGTATGAGGAGAGGGGGTGATATACATCCACCCCACTTTTTTTTCTCCTTGTTCTCTTCTATTCCGAAAAAATAACCGGTTTCTATCCTGAAGCAGAAGAATAGTGTCTCTAATTTCCCGTTGTCTAGGGATATGAATGACATAGAAACACTTTGAGCTCAATTTACTCGATTCCTGTGAAAGATATCAAAAATCTGTCAACTGATAAAATGTTAAGGAGTTTATGATAAAAATTGTATTAGTTGGCCACTTTTTGATATCTTTCACAGAAATCGAGATAATAGAGCATAAAGTAGAATTATGTCAAGCTCGAATGTTGACCTTATATGGCTAATCTAGTTGAACCAGGCAAATTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTAGCCTTCAGCTAGCTATT</pcr_primer_p1>
		<pcr_primer_p2>TTACCTGTATAGGTGCTCTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>534</pcr_amplicon_size>
		<canonical_amplicon>CTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTTAATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCAAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCACCTATACAGGTAA</canonical_amplicon>
		<polymorphic_amplicon>CTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTTAATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCAAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAARTACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCACCTATACAGGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2244</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>225882</contig_pos>
        <strand></strand>
        <context>ttcaaaarta[C/T]tattttgaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATA</left_flank>
        <right_flank>TATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCACCTATACA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTAACCTTCCTAAGCCTACGCTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTTAATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCAAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCACCTATACAGGTAAAACCTCGAAAAAAAACGGGTCAAAAAAGAATGTTGTTGTACAGATCTTCTCATAGAAGCTATTTTATTCAACACAGAGTGAGAATGTATGAGGAGAGGGGGTGATATACATCCACCCCACTTTTTTTTCTCCTTGTTCTCTTCTATTCCGAAAAAATAACCGGTTTCTATCCTGAAGCAGAAGAATAGTGTCTCTAATTTCCCGTTGTCTAGGGATATGAATGACATAGAAACACTTTGAGCTCAATTTACTCGATTCCTGTGAAAGATATCAAAAATCTGTCAACTGATAAAATGTTAAGGAGTTTATGATAAAAATTGTATTAGTTGGCCACTTTTTGATATCTTTCACAGAAATCGAGATAATAGAGCATAAAGTAGAATTATGTCAAGCTCGAATGTTGACCTTATATGGCTAATCTAGTTGAACCAGGCAAATTGAAACT</canonical>
            <polymorphic>CTTAACCTTCCTAAGCCTACGCTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTTAATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCAAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATAYTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCACCTATACAGGTAAAACCTCGAAAAAAAACGGGTCAAAAAAGAATGTTGTTGTACAGATCTTCTCATAGAAGCTATTTTATTCAACACAGAGTGAGAATGTATGAGGAGAGGGGGTGATATACATCCACCCCACTTTTTTTTCTCCTTGTTCTCTTCTATTCCGAAAAAATAACCGGTTTCTATCCTGAAGCAGAAGAATAGTGTCTCTAATTTCCCGTTGTCTAGGGATATGAATGACATAGAAACACTTTGAGCTCAATTTACTCGATTCCTGTGAAAGATATCAAAAATCTGTCAACTGATAAAATGTTAAGGAGTTTATGATAAAAATTGTATTAGTTGGCCACTTTTTGATATCTTTCACAGAAATCGAGATAATAGAGCATAAAGTAGAATTATGTCAAGCTCGAATGTTGACCTTATATGGCTAATCTAGTTGAACCAGGCAAATTGAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTAGCCTTCAGCTAGCTATT</pcr_primer_p1>
		<pcr_primer_p2>TTACCTGTATAGGTGCTCTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>534</pcr_amplicon_size>
		<canonical_amplicon>CTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTTAATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCAAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCACCTATACAGGTAA</canonical_amplicon>
		<polymorphic_amplicon>CTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTTAATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCAAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATAYTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCACCTATACAGGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2245</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>228493</contig_pos>
        <strand>+</strand>
        <context>AATTAAGCTT[A/C]AAAGTCAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAAACAGAGATTCCCCACTTCAAAATGATTCTAGAGCAAAATTAAGCTT</left_flank>
        <right_flank>AAAGTCAAAATTTCAGCTCAAAATACACCTAAAACTAACGGATAATTATG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATAGGATGAAAATTCAAGTTTTTCAGACAAAATTAGTCTAGAAAGTTGGGAAAATGATAAAATATGTTTATTTTGAAATTTTGAAATTTTTCGAAAAAGCACTTTAAGAGATTTAAGGGGAATTTGGGTCCTTAGAGTGTTTTCTGGCTGAAATCAAGCTCAAAAATCGATTTTTACAACTCAAAAAATCTATAAAACCATGAAATAATCATGAAAATCGGGGTTCTTAGAAATTCGAAAAAATTCAAAAAAAAACTCTGAAATTTCAAAATTTCAGAAACTTCAAATTTGAGCATTTTTAAGGGAATATTGAGAGAAATACAACTCAGAAATCGATTTTTTAGCTTAAAATACCCTTAAAACCATTAAAAAACCAGAAATCGTGAATTTTGAAAAAATTCCAAAAATTCCAAAAAAAAGTTTTTTCAGAAATTTTCAGAATTTCTGAAAAACAGAGATTCCCCACTTCAAAATGATTCTAGAGCAAAATTAAGCTTAAAAGTCAAAATTTCAGCTCAAAATACACCTAAAACTAACGGATAATTATGAAAATCGAGTTTTTTGAAAAATTTAAAAAATTCAAAAAATATATTTTTTTCAGAAATTTTCAGTATTCAAAAAATATGGAATTTTCTCGTTTGAAAGTTGTTCTAGAGCAAAATAAAGCTCAGAAATCGATTTTTCAGTTCAAAGAACTCCTAAAACTATCGGATAATCATGAAAATCGAGTTTTTTTTTGAAAAATCGAAAAAAACTCGAAAAATTCAGTTTTTTTTTCAGAATTTCAGAAAATAGGGATTTCACCATTTCAGAAGGGTTCTAGAGTGAAATGAACTCTGAAAATCGAATTTTCAGCTCAAAATACCCCTAAAACAACCGGATATTCATGAAAATCGGAACTTTTTAAAGATTCAAAAAATTCAAGAAAAAATTTCAGCATTTTTACAGATAATCCCGTTTCGCCGCCACAATCTCTACAGTGCCCTTTGGTGGGCGGG</canonical>
            <polymorphic>AAATAGGATGAAAATTCAAGTTTTTCAGACAAAATTAGTCTAGAAAGTTGGGAAAATGATAAAATATGTTTATTTTGAAATTTTGAAATTTTTCGAAAAAGCACTTTAAGAGATTTAAGGGGAATTTGGGTCCTTAGAGTGTTTTCTGGCTGAAATCAAGCTCAAAAATCGATTTTTACAACTCAAAAAATCTATAAAACCATGAAATAATCATGAAAATCGGGGTTCTTAGAAATTCGAAAAAATTCAAAAAAAAACTCTGAAATTTCAAAATTTCAGAAACTTCAAATTTGAGCATTTTTAAGGGAATATTGAGAGAAATACAACTCAGAAATCGATTTTTTAGCTTAAAATACCCTTAAAACCATTAAAAAACCAGAAATCGTGAATTTTGAAAAAATTCCAAAAATTCCAAAAAAAAGTTTTTTCAGAAATTTTCAGAATTTCTGAAAAACAGAGATTCCCCACTTCAAAATGATTCTAGAGCAAAATTAAGCTTMAAAGTCAAAATTTCAGCTCAAAATACACCTAAAACTAACGGATAATTATGAAAATCGAGTTTTTTGAAAAATTTAAAAAATTCAAAAAATATATTTTTTTCAGAAATTTTCAGTATTCAAAAAATATGGAATTTTCTCGTTTGAAAGTTGTTCTAGAGCAAAATAAAGCTCAGAAATCGATTTTTCAGTTCAAAGAACTCCTAAAACTATCGGATAATCATGAAAATCGAGTTTTTTTTTGAAAAATCGAAAAAAACTCGAAAAATTCAGTTTTTTTTTCAGAATTTCAGAAAATAGGGATTTCACCATTTCAGAAGGGTTCTAGAGTGAAATGAACTCTGAAAATCGAATTTTCAGCTCAAAATACCCCTAAAACAACCGGATATTCATGAAAATCGGAACTTTTTAAAGATTCAAAAAATTCAAGAAAAAATTTCAGCATTTTTACAGATAATCCCGTTTCGCCGCCACAATCTCTACAGTGCCCTTTGGTGGGCGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>333 186 124 106 94 75 47 11 9 9 6</canonical_bands>
                <polymorphic_bands>333 186 124 106 94 81 47 11 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGAGAAATACAACTCAGAAATC</pcr_primer_p1>
		<pcr_primer_p2>TCGATTTTCATAATTATCCGTTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TGAGAGAAATACAACTCAGAAATCGATTTTTTAGCTTAAAATACCCTTAAAACCATTAAAAAACCAGAAATCGTGAATTTTGAAAAAATTCCAAAAATTCCAAAAAAAAGTTTTTTCAGAAATTTTCAGAATTTCTGAAAAACAGAGATTCCCCACTTCAAAATGATTCTAGAGCAAAATTAAGCTTAAAAGTCAAAATTTCAGCTCAAAATACACCTAAAACTAACGGATAATTATGAAAATCGA</canonical_amplicon>
		<polymorphic_amplicon>TGAGAGAAATACAACTCAGAAATCGATTTTTTAGCTTAAAATACCCTTAAAACCATTAAAAAACCAGAAATCGTGAATTTTGAAAAAATTCCAAAAATTCCAAAAAAAAGTTTTTTCAGAAATTTTCAGAATTTCTGAAAAACAGAGATTCCCCACTTCAAAATGATTCTAGAGCAAAATTAAGCTTMAAAGTCAAAATTTCAGCTCAAAATACACCTAAAACTAACGGATAATTATGAAAATCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2249</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>228097</contig_pos>
        <strand>+</strand>
        <context>CGAAAAAGCA[C/T]TTTAAGAGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATGATAAAATATGTTTATTTTGAAATTTTGAAATTTTTCGAAAAAGCA</left_flank>
        <right_flank>TTTAAGAGATTTAAGGGGAATTTGGGTCCTTAGAGTGTTTTCTGGCTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAAACAGATAAAATGTAGCTGATATCATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTAAACGGCTTCAGGAGTGGCATTCTGTTGGAGTGCCCCTATACTGTTAACTTTGAGCCTATATATCTCACTTCTTTGGAAAGATATCAAAAAGTTTTCAACTAATAAAATATTTATCATGATATCAGCTACATTTTATCAGTTGATTACTTTTTGATATCTCTCACAGAAAATGAGATACATGGGCTCATATTTGACGATTCGGGAGGCGTTCTATAGAGTGTTTACGGTATTTTTTGGGGGATTTTTAACCGGTATTGGGAATTGAAATTGTACAAAAAAAGTGTGGTTTTAGGGGTAAAATAGGATGAAAATTCAAGTTTTTCAGACAAAATTAGTCTAGAAAGTTGGGAAAATGATAAAATATGTTTATTTTGAAATTTTGAAATTTTTCGAAAAAGCACTTTAAGAGATTTAAGGGGAATTTGGGTCCTTAGAGTGTTTTCTGGCTGAAATCAAGCTCAAAAATCGATTTTTACAACTCAAAAAATCTATAAAACCATGAAATAATCATGAAAATCGGGGTTCTTAGAAATTCGAAAAAATTCAAAAAAAAACTCTGAAATTTCAAAATTTCAGAAACTTCAAATTTGAGCATTTTTAAGGGAATATTGAGAGAAATACAACTCAGAAATCGATTTTTTAGCTTAAAATACCCTTAAAACCATTAAAAAACCAGAAATCGTGAATTTTGAAAAAATTCCAAAAATTCCAAAAAAAAGTTTTTTCAGAAATTTTCAGAATTTCTGAAAAACAGAGATTCCCCACTTCAAAATGATTCTAGAGCAAAATTAAGCTTAAAAGTCAAAATTTCAGCTCAAAATACACCTAAAACTAACGGATAATTATGAAAATCGAGTTTTTTGAAAAATTTAAAAAATTCAAAAAATATATTTTTTTCAGA</canonical>
            <polymorphic>GTAAACAGATAAAATGTAGCTGATATCATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTAAACGGCTTCAGGAGTGGCATTCTGTTGGAGTGCCCCTATACTGTTAACTTTGAGCCTATATATCTCACTTCTTTGGAAAGATATCAAAAAGTTTTCAACTAATAAAATATTTATCATGATATCAGCTACATTTTATCAGTTGATTACTTTTTGATATCTCTCACAGAAAATGAGATACATGGGCTCATATTTGACGATTCGGGAGGCGTTCTATAGAGTGTTTACGGTATTTTTTGGGGGATTTTTAACCGGTATTGGGAATTGAAATTGTACAAAAAAAGTGTGGTTTTAGGGGTAAAATAGGATGAAAATTCAAGTTTTTCAGACAAAATTAGTCTAGAAAGTTGGGAAAATGATAAAATATGTTTATTTTGAAATTTTGAAATTTTTCGAAAAAGCAYTTTAAGAGATTTAAGGGGAATTTGGGTCCTTAGAGTGTTTTCTGGCTGAAATCAAGCTCAAAAATCGATTTTTACAACTCAAAAAATCTATAAAACCATGAAATAATCATGAAAATCGGGGTTCTTAGAAATTCGAAAAAATTCAAAAAAAAACTCTGAAATTTCAAAATTTCAGAAACTTCAAATTTGAGCATTTTTAAGGGAATATTGAGAGAAATACAACTCAGAAATCGATTTTTTAGCTTAAAATACCCTTAAAACCATTAAAAAACCAGAAATCGTGAATTTTGAAAAAATTCCAAAAATTCCAAAAAAAAGTTTTTTCAGAAATTTTCAGAATTTCTGAAAAACAGAGATTCCCCACTTCAAAATGATTCTAGAGCAAAATTAAGCTTAAAAGTCAAAATTTCAGCTCAAAATACACCTAAAACTAACGGATAATTATGAAAATCGAGTTTTTTGAAAAATTTAAAAAATTCAAAAAATATATTTTTTTCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>246 115 96 80 79 77 63 60 57 38 36 35 16 2</canonical_bands>
                <polymorphic_bands>246 153 96 80 79 77 63 60 57 36 35 16 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGGGGTAAAATAGGATGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATTTCTAAGAACCCCGATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTAGGGGTAAAATAGGATGAAAATTCAAGTTTTTCAGACAAAATTAGTCTAGAAAGTTGGGAAAATGATAAAATATGTTTATTTTGAAATTTTGAAATTTTTCGAAAAAGCACTTTAAGAGATTTAAGGGGAATTTGGGTCCTTAGAGTGTTTTCTGGCTGAAATCAAGCTCAAAAATCGATTTTTACAACTCAAAAAATCTATAAAACCATGAAATAATCATGAAAATCGGGGTTCTTAGAAATT</canonical_amplicon>
		<polymorphic_amplicon>TTAGGGGTAAAATAGGATGAAAATTCAAGTTTTTCAGACAAAATTAGTCTAGAAAGTTGGGAAAATGATAAAATATGTTTATTTTGAAATTTTGAAATTTTTCGAAAAAGCAYTTTAAGAGATTTAAGGGGAATTTGGGTCCTTAGAGTGTTTTCTGGCTGAAATCAAGCTCAAAAATCGATTTTTACAACTCAAAAAATCTATAAAACCATGAAATAATCATGAAAATCGGGGTTCTTAGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2250</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>228054</contig_pos>
        <strand>+</strand>
        <context>GGAAAATGAT[A/G]AAATATGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATTCAAGTTTTTCAGACAAAATTAGTCTAGAAAGTTGGGAAAATGAT</left_flank>
        <right_flank>AAATATGTTTATTTTGAAATTTTGAAATTTTTCGAAAAAGCACTTTAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGAGCCTACATATCTCATTTTCGAGAGATATCAAAGTTTTGTAAACAGATAAAATGTAGCTGATATCATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTAAACGGCTTCAGGAGTGGCATTCTGTTGGAGTGCCCCTATACTGTTAACTTTGAGCCTATATATCTCACTTCTTTGGAAAGATATCAAAAAGTTTTCAACTAATAAAATATTTATCATGATATCAGCTACATTTTATCAGTTGATTACTTTTTGATATCTCTCACAGAAAATGAGATACATGGGCTCATATTTGACGATTCGGGAGGCGTTCTATAGAGTGTTTACGGTATTTTTTGGGGGATTTTTAACCGGTATTGGGAATTGAAATTGTACAAAAAAAGTGTGGTTTTAGGGGTAAAATAGGATGAAAATTCAAGTTTTTCAGACAAAATTAGTCTAGAAAGTTGGGAAAATGATAAAATATGTTTATTTTGAAATTTTGAAATTTTTCGAAAAAGCACTTTAAGAGATTTAAGGGGAATTTGGGTCCTTAGAGTGTTTTCTGGCTGAAATCAAGCTCAAAAATCGATTTTTACAACTCAAAAAATCTATAAAACCATGAAATAATCATGAAAATCGGGGTTCTTAGAAATTCGAAAAAATTCAAAAAAAAACTCTGAAATTTCAAAATTTCAGAAACTTCAAATTTGAGCATTTTTAAGGGAATATTGAGAGAAATACAACTCAGAAATCGATTTTTTAGCTTAAAATACCCTTAAAACCATTAAAAAACCAGAAATCGTGAATTTTGAAAAAATTCCAAAAATTCCAAAAAAAAGTTTTTTCAGAAATTTTCAGAATTTCTGAAAAACAGAGATTCCCCACTTCAAAATGATTCTAGAGCAAAATTAAGCTTAAAAGTCAAAATTTCAGCTCAAAATACACCTAAAACTAACGGATAATTATGAAAATCGAGTT</canonical>
            <polymorphic>TTTTGAGCCTACATATCTCATTTTCGAGAGATATCAAAGTTTTGTAAACAGATAAAATGTAGCTGATATCATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTAAACGGCTTCAGGAGTGGCATTCTGTTGGAGTGCCCCTATACTGTTAACTTTGAGCCTATATATCTCACTTCTTTGGAAAGATATCAAAAAGTTTTCAACTAATAAAATATTTATCATGATATCAGCTACATTTTATCAGTTGATTACTTTTTGATATCTCTCACAGAAAATGAGATACATGGGCTCATATTTGACGATTCGGGAGGCGTTCTATAGAGTGTTTACGGTATTTTTTGGGGGATTTTTAACCGGTATTGGGAATTGAAATTGTACAAAAAAAGTGTGGTTTTAGGGGTAAAATAGGATGAAAATTCAAGTTTTTCAGACAAAATTAGTCTAGAAAGTTGGGAAAATGATRAAATATGTTTATTTTGAAATTTTGAAATTTTTCGAAAAAGCACTTTAAGAGATTTAAGGGGAATTTGGGTCCTTAGAGTGTTTTCTGGCTGAAATCAAGCTCAAAAATCGATTTTTACAACTCAAAAAATCTATAAAACCATGAAATAATCATGAAAATCGGGGTTCTTAGAAATTCGAAAAAATTCAAAAAAAAACTCTGAAATTTCAAAATTTCAGAAACTTCAAATTTGAGCATTTTTAAGGGAATATTGAGAGAAATACAACTCAGAAATCGATTTTTTAGCTTAAAATACCCTTAAAACCATTAAAAAACCAGAAATCGTGAATTTTGAAAAAATTCCAAAAATTCCAAAAAAAAGTTTTTTCAGAAATTTTCAGAATTTCTGAAAAACAGAGATTCCCCACTTCAAAATGATTCTAGAGCAAAATTAAGCTTAAAAGTCAAAATTTCAGCTCAAAATACACCTAAAACTAACGGATAATTATGAAAATCGAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGGGGTAAAATAGGATGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATTTCTAAGAACCCCGATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTAGGGGTAAAATAGGATGAAAATTCAAGTTTTTCAGACAAAATTAGTCTAGAAAGTTGGGAAAATGATAAAATATGTTTATTTTGAAATTTTGAAATTTTTCGAAAAAGCACTTTAAGAGATTTAAGGGGAATTTGGGTCCTTAGAGTGTTTTCTGGCTGAAATCAAGCTCAAAAATCGATTTTTACAACTCAAAAAATCTATAAAACCATGAAATAATCATGAAAATCGGGGTTCTTAGAAATT</canonical_amplicon>
		<polymorphic_amplicon>TTAGGGGTAAAATAGGATGAAAATTCAAGTTTTTCAGACAAAATTAGTCTAGAAAGTTGGGAAAATGATRAAATATGTTTATTTTGAAATTTTGAAATTTTTCGAAAAAGCACTTTAAGAGATTTAAGGGGAATTTGGGTCCTTAGAGTGTTTTCTGGCTGAAATCAAGCTCAAAAATCGATTTTTACAACTCAAAAAATCTATAAAACCATGAAATAATCATGAAAATCGGGGTTCTTAGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2272</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>230623</contig_pos>
        <strand>+</strand>
        <context>CTCGAAAAAC[G/T]TTTTTTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAAC</left_flank>
        <right_flank>TTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTGTTTACGGTAAGTATAAGAAGAGCGTTTTGAAAAATTTTAGAAACAAAATTCTGAGATTTTTCTAGGAAATCTGGAAATTTAAAAGAAAGTTTCGAAATTTTTTGAAGAGCTCGGAAAAGAAAGTGGGCGGAGCCAAGAAATAAACTAATCGGATTAAAAAATTATTTGAAAAAGGGGCGGAGCTTAATTGGACCAAAAAAAAAGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACTTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAAGAGTTTAGAAGGTCCTTTTTGAAAGTTTTAGAAAGGGAAGAAGATGGGAGAGTGGGGGTCAATAGAAAAGGGAAAAAAAGGGTCCAAGGGGGAAAAATGACCAGTTTCCGGTGGGAAAAATGGGAAAAAGCAGTTCAAGACACTAGATTTTTAGATTTAAAATAGCTCAAAATTGGTCCAAAACTAACGAAAAACGATTTTTCATTCTAAAACCTCTATTTTCACCTTTTTACCCACACTT</canonical>
            <polymorphic>GAGTGTTTACGGTAAGTATAAGAAGAGCGTTTTGAAAAATTTTAGAAACAAAATTCTGAGATTTTTCTAGGAAATCTGGAAATTTAAAAGAAAGTTTCGAAATTTTTTGAAGAGCTCGGAAAAGAAAGTGGGCGGAGCCAAGAAATAAACTAATCGGATTAAAAAATTATTTGAAAAAGGGGCGGAGCTTAATTGGACCAAAAAAAAAGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACKTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAAGAGTTTAGAAGGTCCTTTTTGAAAGTTTTAGAAAGGGAAGAAGATGGGAGAGTGGGGGTCAATAGAAAAGGGAAAAAAAGGGTCCAAGGGGGAAAAATGACCAGTTTCCGGTGGGAAAAATGGGAAAAAGCAGTTCAAGACACTAGATTTTTAGATTTAAAATAGCTCAAAATTGGTCCAAAACTAACGAAAAACGATTTTTCATTCTAAAACCTCTATTTTCACCTTTTTACCCACACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTAGAGGGGGCTCTTCTATTA</pcr_primer_p1>
		<pcr_primer_p2>TAATCCGCTTATATTTCTTCACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACTTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTA</canonical_amplicon>
		<polymorphic_amplicon>ATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACKTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2273</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>230695</contig_pos>
        <strand>+</strand>
        <context>GTTTTTTAGA[A/G]TTATTGACAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGA</left_flank>
        <right_flank>TTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCTGGAAATTTAAAAGAAAGTTTCGAAATTTTTTGAAGAGCTCGGAAAAGAAAGTGGGCGGAGCCAAGAAATAAACTAATCGGATTAAAAAATTATTTGAAAAAGGGGCGGAGCTTAATTGGACCAAAAAAAAAGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACTTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAAGAGTTTAGAAGGTCCTTTTTGAAAGTTTTAGAAAGGGAAGAAGATGGGAGAGTGGGGGTCAATAGAAAAGGGAAAAAAAGGGTCCAAGGGGGAAAAATGACCAGTTTCCGGTGGGAAAAATGGGAAAAAGCAGTTCAAGACACTAGATTTTTAGATTTAAAATAGCTCAAAATTGGTCCAAAACTAACGAAAAACGATTTTTCATTCTAAAACCTCTATTTTCACCTTTTTACCCACACTTTCAGAGCTTTTAACCCCGATTTTCGAATTGCCCGCCCTCGAAAACCCCCAAAAAACATTTTTTTAAAAAAAT</canonical>
            <polymorphic>AATCTGGAAATTTAAAAGAAAGTTTCGAAATTTTTTGAAGAGCTCGGAAAAGAAAGTGGGCGGAGCCAAGAAATAAACTAATCGGATTAAAAAATTATTTGAAAAAGGGGCGGAGCTTAATTGGACCAAAAAAAAAGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACTTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGARTTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAAGAGTTTAGAAGGTCCTTTTTGAAAGTTTTAGAAAGGGAAGAAGATGGGAGAGTGGGGGTCAATAGAAAAGGGAAAAAAAGGGTCCAAGGGGGAAAAATGACCAGTTTCCGGTGGGAAAAATGGGAAAAAGCAGTTCAAGACACTAGATTTTTAGATTTAAAATAGCTCAAAATTGGTCCAAAACTAACGAAAAACGATTTTTCATTCTAAAACCTCTATTTTCACCTTTTTACCCACACTTTCAGAGCTTTTAACCCCGATTTTCGAATTGCCCGCCCTCGAAAACCCCCAAAAAACATTTTTTTAAAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>200 107 97 96 79 64 51 47 39 35 34 26 26 24 22 20 10 10 8 5</canonical_bands>
                <polymorphic_bands>200 158 97 96 79 64 47 39 35 34 26 26 24 22 20 10 10 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCCAAAGATAAGGAAAAATA</pcr_primer_p1>
		<pcr_primer_p2>AATTTTAAGCTTTGAAACATCCT</pcr_primer_p2>
		<pcr_amplicon_size>222</pcr_amplicon_size>
		<canonical_amplicon>TTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGARTTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2275</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>230808</contig_pos>
        <strand>+</strand>
        <context>TTCTTCAAAA[A/T]CCCCAATTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAA</left_flank>
        <right_flank>CCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTTAATTGGACCAAAAAAAAAGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACTTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAAGAGTTTAGAAGGTCCTTTTTGAAAGTTTTAGAAAGGGAAGAAGATGGGAGAGTGGGGGTCAATAGAAAAGGGAAAAAAAGGGTCCAAGGGGGAAAAATGACCAGTTTCCGGTGGGAAAAATGGGAAAAAGCAGTTCAAGACACTAGATTTTTAGATTTAAAATAGCTCAAAATTGGTCCAAAACTAACGAAAAACGATTTTTCATTCTAAAACCTCTATTTTCACCTTTTTACCCACACTTTCAGAGCTTTTAACCCCGATTTTCGAATTGCCCGCCCTCGAAAACCCCCAAAAAACATTTTTTTAAAAAAATTGCCACCGGTGGGATTCGAACCCGAGACCCCTAGATCCAAATTCCTTCGTCGAAAATCCCACTAGGCCATATGAGCAATTTTTTAAAAAATTGCTAGAAAATTGATGTTTGGG</canonical>
            <polymorphic>AGCTTAATTGGACCAAAAAAAAAGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACTTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAAWCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAAGAGTTTAGAAGGTCCTTTTTGAAAGTTTTAGAAAGGGAAGAAGATGGGAGAGTGGGGGTCAATAGAAAAGGGAAAAAAAGGGTCCAAGGGGGAAAAATGACCAGTTTCCGGTGGGAAAAATGGGAAAAAGCAGTTCAAGACACTAGATTTTTAGATTTAAAATAGCTCAAAATTGGTCCAAAACTAACGAAAAACGATTTTTCATTCTAAAACCTCTATTTTCACCTTTTTACCCACACTTTCAGAGCTTTTAACCCCGATTTTCGAATTGCCCGCCCTCGAAAACCCCCAAAAAACATTTTTTTAAAAAAATTGCCACCGGTGGGATTCGAACCCGAGACCCCTAGATCCAAATTCCTTCGTCGAAAATCCCACTAGGCCATATGAGCAATTTTTTAAAAAATTGCTAGAAAATTGATGTTTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGAAATATAAGCGGATTACG</pcr_primer_p1>
		<pcr_primer_p2>AACTTTCAAAAAGGACCTTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAAGAGTTTAGAAGGTCCTTTTTGAAAGTT</canonical_amplicon>
		<polymorphic_amplicon>GAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAAWCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAAGAGTTTAGAAGGTCCTTTTTGAAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2276</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>230883</contig_pos>
        <strand>+</strand>
        <context>TTTYAAAAAA[A/G]AGTTTAGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAA</left_flank>
        <right_flank>AGTTTAGAAGGTCCTTTTTGAAAGTTTTAGAAAGGGAAGAAGATGGGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACTTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAAGAGTTTAGAAGGTCCTTTTTGAAAGTTTTAGAAAGGGAAGAAGATGGGAGAGTGGGGGTCAATAGAAAAGGGAAAAAAAGGGTCCAAGGGGGAAAAATGACCAGTTTCCGGTGGGAAAAATGGGAAAAAGCAGTTCAAGACACTAGATTTTTAGATTTAAAATAGCTCAAAATTGGTCCAAAACTAACGAAAAACGATTTTTCATTCTAAAACCTCTATTTTCACCTTTTTACCCACACTTTCAGAGCTTTTAACCCCGATTTTCGAATTGCCCGCCCTCGAAAACCCCCAAAAAACATTTTTTTAAAAAAATTGCCACCGGTGGGATTCGAACCCGAGACCCCTAGATCCAAATTCCTTCGTCGAAAATCCCACTAGGCCATATGAGCAATTTTTTAAAAAATTGCTAGAAAATTGATGTTTGGGTCAAAAATTAGGTTTTAAAAGGGTTTTAGGCAATCTTTGGCTCCTTTGAGTGATTTTCCAGCTATTTTCGAGGAT</canonical>
            <polymorphic>TAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACTTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAARAGTTTAGAAGGTCCTTTTTGAAAGTTTTAGAAAGGGAAGAAGATGGGAGAGTGGGGGTCAATAGAAAAGGGAAAAAAAGGGTCCAAGGGGGAAAAATGACCAGTTTCCGGTGGGAAAAATGGGAAAAAGCAGTTCAAGACACTAGATTTTTAGATTTAAAATAGCTCAAAATTGGTCCAAAACTAACGAAAAACGATTTTTCATTCTAAAACCTCTATTTTCACCTTTTTACCCACACTTTCAGAGCTTTTAACCCCGATTTTCGAATTGCCCGCCCTCGAAAACCCCCAAAAAACATTTTTTTAAAAAAATTGCCACCGGTGGGATTCGAACCCGAGACCCCTAGATCCAAATTCCTTCGTCGAAAATCCCACTAGGCCATATGAGCAATTTTTTAAAAAATTGCTAGAAAATTGATGTTTGGGTCAAAAATTAGGTTTTAAAAGGGTTTTAGGCAATCTTTGGCTCCTTTGAGTGATTTTCCAGCTATTTTCGAGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCAGAACAGGAGTGAATATAACTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTCTATTGACCCCCACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAAGAGTTTAGAAGGTCCTTTTTGAAAGTTTTAGAAAGGGAAGAAGATGGGAGAGTGGGGGTCAATAGAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAARAGTTTAGAAGGTCCTTTTTGAAAGTTTTAGAAAGGGAAGAAGATGGGAGAGTGGGGGTCAATAGAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2291</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>257366</contig_pos>
        <strand></strand>
        <context>CATTTTTCGC[A/G]AAAAATTTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTTGGTGCCAAAAACCTGCTTAAAATGCTGAATTTCCTCATTTTTCGC</left_flank>
        <right_flank>AAAAATTTCGACCTTTCAATGCGGCCGAAATGGTCCAAAATTGTCGAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTTTGCGTTCCAAAATTGTCCGAAAAGAGCTGCAAATCTGGCTGAAATAGTAGTCGCGAATTTGAAGCAATTTTTCTGCTGATCTGAAATGATGCGAAAGTTCTGAAAATTCGGTTGAAACGAATTTTCACATTTTCCCAATTTCTAAGCCGTGTTCGCCCGTTCAAAATGGACCAAAACTGGCCGACAGTTTTTCACAGAGTTTCAGCTTTTTCTCGGGTGAGAAATGTGACCCTAAATAGCTCTAAACTTGTCTGAAATTGATTGGAATGCTGAAATTGGAAATTTTGGGCTCCCAAAGTCACCACTTTTGGCGCCAAAAAACCGCCCAAAATGCAGTTTGGTCCTACCGATTCCAGTTTGGCCAATTTTAGCATTTTTGGAATGCTGGGATTCGATATTTTGAGCTGCAGAGAGTTTTGCTTCAAAATTTGACTTCGAGTTCACTTTTGGTGCCAAAAACCTGCTTAAAATGCTGAATTTCCTCATTTTTCGCAAAAAATTTCGACCTTTCAATGCGGCCGAAATGGTCCAAAATTGTCGAAAAACGAATCAGATTTTTGGCAACATTTTTTGATCCAAAAAAGCTGAAAATTTGGCTGAAACGAATTGTGAGCTACTTTAGCCCTTTTCAGCTAAACCTAGAGCTCAAATCTCCAAAGATTTTCAGAGCTAAAAGTGGCGAATTTCGTCGAAATTCAAAAATCCAAAGGATGCCGAGAATCCATTCAAATCTCTCTTTCTCACAATATTAATATGATGACTTAGCCCATTCATCGTCGTCGGGCAATGAGGCAACGATAACAATCTCGCGGCTATTCTCTTTTTCTTCGGAAAGTCATCAAATTTCGAGGAAGATGATGATGATGATGAGAAGAAGACGTCGGAAGAGAGAGAGGAGATCCATCATTTTTCAATTATGCTGTGTGTTCTTAGATTCAGCATTGAGGATCGAAAAGATGAAGGAGATTATATGGGAATATTCCCTAATTTTCTC</canonical>
            <polymorphic>CATTTTTGCGTTCCAAAATTGTCCGAAAAGAGCTGCAAATCTGGCTGAAATAGTAGTCGCGAATTTGAAGCAATTTTTCTGCTGATCTGAAATGATGCGAAAGTTCTGAAAATTCGGTTGAAACGAATTTTCACATTTTCCCAATTTCTAAGCCGTGTTCGCCCGTTCAAAATGGACCAAAACTGGCCGACAGTTTTTCACAGAGTTTCAGCTTTTTCTCGGGTGAGAAATGTGACCCTAAATAGCTCTAAACTTGTCTGAAATTGATTGGAATGCTGAAATTGGAAATTTTGGGCTCCCAAAGTCACCACTTTTGGCGCCAAAAAACCGCCCAAAATGCAGTTTGGTCCTACCGATTCCAGTTTGGCCAATTTTAGCATTTTTGGAATGCTGGGATTCGATATTTTGAGCTGCAGAGAGTTTTGCTTCAAAATTTGACTTCGAGTTCACTTTTGGTGCCAAAAACCTGCTTAAAATGCTGAATTTCCTCATTTTTCGCRAAAAATTTCGACCTTTCAATGCGGCCGAAATGGTCCAAAATTGTCGAAAAACGAATCAGATTTTTGGCAACATTTTTTGATCCAAAAAAGCTGAAAATTTGGCTGAAACGAATTGTGAGCTACTTTAGCCCTTTTCAGCTAAACCTAGAGCTCAAATCTCCAAAGATTTTCAGAGCTAAAAGTGGCGAATTTCGTCGAAATTCAAAAATCCAAAGGATGCCGAGAATCCATTCAAATCTCTCTTTCTCACAATATTAATATGATGACTTAGCCCATTCATCGTCGTCGGGCAATGAGGCAACGATAACAATCTCGCGGCTATTCTCTTTTTCTTCGGAAAGTCATCAAATTTCGAGGAAGATGATGATGATGATGAGAAGAAGACGTCGGAAGAGAGAGAGGAGATCCATCATTTTTCAATTATGCTGTGTGTTCTTAGATTCAGCATTGAGGATCGAAAAGATGAAGGAGATTATATGGGAATATTCCCTAATTTTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGGGATTCGATATTTTGAG</pcr_primer_p1>
		<pcr_primer_p2>TAGCTGAAAAGGGCTAAAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTGGGATTCGATATTTTGAGCTGCAGAGAGTTTTGCTTCAAAATTTGACTTCGAGTTCACTTTTGGTGCCAAAAACCTGCTTAAAATGCTGAATTTCCTCATTTTTCGCAAAAAATTTCGACCTTTCAATGCGGCCGAAATGGTCCAAAATTGTCGAAAAACGAATCAGATTTTTGGCAACATTTTTTGATCCAAAAAAGCTGAAAATTTGGCTGAAACGAATTGTGAGCTACTTTAGCCCTTTTCAGCTA</canonical_amplicon>
		<polymorphic_amplicon>CTGGGATTCGATATTTTGAGCTGCAGAGAGTTTTGCTTCAAAATTTGACTTCGAGTTCACTTTTGGTGCCAAAAACCTGCTTAAAATGCTGAATTTCCTCATTTTTCGCRAAAAATTTCGACCTTTCAATGCGGCCGAAATGGTCCAAAATTGTCGAAAAACGAATCAGATTTTTGGCAACATTTTTTGATCCAAAAAAGCTGAAAATTTGGCTGAAACGAATTGTGAGCTACTTTAGCCCTTTTCAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2292</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>257333</contig_pos>
        <strand></strand>
        <context>TGCCAAAAAC[C/A]TGCTTAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AGAGTTTTGCTTCAAAATTTGACTTCGAGTTCACTTTTGGTGCCAAAAAC</left_flank>
        <right_flank>TGCTTAAAATGCTGAATTTCCTCATTTTTCGCAAAAAATTTCGACCTTTC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCATTTTGGACCATTTTCCCAAGTTTGGAGACATTTTTGCGTTCCAAAATTGTCCGAAAAGAGCTGCAAATCTGGCTGAAATAGTAGTCGCGAATTTGAAGCAATTTTTCTGCTGATCTGAAATGATGCGAAAGTTCTGAAAATTCGGTTGAAACGAATTTTCACATTTTCCCAATTTCTAAGCCGTGTTCGCCCGTTCAAAATGGACCAAAACTGGCCGACAGTTTTTCACAGAGTTTCAGCTTTTTCTCGGGTGAGAAATGTGACCCTAAATAGCTCTAAACTTGTCTGAAATTGATTGGAATGCTGAAATTGGAAATTTTGGGCTCCCAAAGTCACCACTTTTGGCGCCAAAAAACCGCCCAAAATGCAGTTTGGTCCTACCGATTCCAGTTTGGCCAATTTTAGCATTTTTGGAATGCTGGGATTCGATATTTTGAGCTGCAGAGAGTTTTGCTTCAAAATTTGACTTCGAGTTCACTTTTGGTGCCAAAAACCTGCTTAAAATGCTGAATTTCCTCATTTTTCGCAAAAAATTTCGACCTTTCAATGCGGCCGAAATGGTCCAAAATTGTCGAAAAACGAATCAGATTTTTGGCAACATTTTTTGATCCAAAAAAGCTGAAAATTTGGCTGAAACGAATTGTGAGCTACTTTAGCCCTTTTCAGCTAAACCTAGAGCTCAAATCTCCAAAGATTTTCAGAGCTAAAAGTGGCGAATTTCGTCGAAATTCAAAAATCCAAAGGATGCCGAGAATCCATTCAAATCTCTCTTTCTCACAATATTAATATGATGACTTAGCCCATTCATCGTCGTCGGGCAATGAGGCAACGATAACAATCTCGCGGCTATTCTCTTTTTCTTCGGAAAGTCATCAAATTTCGAGGAAGATGATGATGATGATGAGAAGAAGACGTCGGAAGAGAGAGAGGAGATCCATCATTTTTCAATTATGCTGTGTGTTCTTAGATTCAGCATTGAGGATCGAAAAGATGAA</canonical>
            <polymorphic>ACTCATTTTGGACCATTTTCCCAAGTTTGGAGACATTTTTGCGTTCCAAAATTGTCCGAAAAGAGCTGCAAATCTGGCTGAAATAGTAGTCGCGAATTTGAAGCAATTTTTCTGCTGATCTGAAATGATGCGAAAGTTCTGAAAATTCGGTTGAAACGAATTTTCACATTTTCCCAATTTCTAAGCCGTGTTCGCCCGTTCAAAATGGACCAAAACTGGCCGACAGTTTTTCACAGAGTTTCAGCTTTTTCTCGGGTGAGAAATGTGACCCTAAATAGCTCTAAACTTGTCTGAAATTGATTGGAATGCTGAAATTGGAAATTTTGGGCTCCCAAAGTCACCACTTTTGGCGCCAAAAAACCGCCCAAAATGCAGTTTGGTCCTACCGATTCCAGTTTGGCCAATTTTAGCATTTTTGGAATGCTGGGATTCGATATTTTGAGCTGCAGAGAGTTTTGCTTCAAAATTTGACTTCGAGTTCACTTTTGGTGCCAAAAACMTGCTTAAAATGCTGAATTTCCTCATTTTTCGCAAAAAATTTCGACCTTTCAATGCGGCCGAAATGGTCCAAAATTGTCGAAAAACGAATCAGATTTTTGGCAACATTTTTTGATCCAAAAAAGCTGAAAATTTGGCTGAAACGAATTGTGAGCTACTTTAGCCCTTTTCAGCTAAACCTAGAGCTCAAATCTCCAAAGATTTTCAGAGCTAAAAGTGGCGAATTTCGTCGAAATTCAAAAATCCAAAGGATGCCGAGAATCCATTCAAATCTCTCTTTCTCACAATATTAATATGATGACTTAGCCCATTCATCGTCGTCGGGCAATGAGGCAACGATAACAATCTCGCGGCTATTCTCTTTTTCTTCGGAAAGTCATCAAATTTCGAGGAAGATGATGATGATGATGAGAAGAAGACGTCGGAAGAGAGAGAGGAGATCCATCATTTTTCAATTATGCTGTGTGTTCTTAGATTCAGCATTGAGGATCGAAAAGATGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGGGATTCGATATTTTGAG</pcr_primer_p1>
		<pcr_primer_p2>TAGCTGAAAAGGGCTAAAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTGGGATTCGATATTTTGAGCTGCAGAGAGTTTTGCTTCAAAATTTGACTTCGAGTTCACTTTTGGTGCCAAAAACCTGCTTAAAATGCTGAATTTCCTCATTTTTCGCAAAAAATTTCGACCTTTCAATGCGGCCGAAATGGTCCAAAATTGTCGAAAAACGAATCAGATTTTTGGCAACATTTTTTGATCCAAAAAAGCTGAAAATTTGGCTGAAACGAATTGTGAGCTACTTTAGCCCTTTTCAGCTA</canonical_amplicon>
		<polymorphic_amplicon>CTGGGATTCGATATTTTGAGCTGCAGAGAGTTTTGCTTCAAAATTTGACTTCGAGTTCACTTTTGGTGCCAAAAACMTGCTTAAAATGCTGAATTTCCTCATTTTTCGCAAAAAATTTCGACCTTTCAATGCGGCCGAAATGGTCCAAAATTGTCGAAAAACGAATCAGATTTTTGGCAACATTTTTTGATCCAAAAAAGCTGAAAATTTGGCTGAAACGAATTGTGAGCTACTTTAGCCCTTTTCAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2293</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>257312</contig_pos>
        <strand></strand>
        <context>TGACTTCGAG[T/C]TCACTTTTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTCGATATTTTGAGCTGCAGAGAGTTTTGCTTCAAAATTTGACTTCGAG</left_flank>
        <right_flank>TCACTTTTGGTGCCAAAAACCTGCTTAAAATGCTGAATTTCCTCATTTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGGCTCATAATGTTTGGGACTCATTTTGGACCATTTTCCCAAGTTTGGAGACATTTTTGCGTTCCAAAATTGTCCGAAAAGAGCTGCAAATCTGGCTGAAATAGTAGTCGCGAATTTGAAGCAATTTTTCTGCTGATCTGAAATGATGCGAAAGTTCTGAAAATTCGGTTGAAACGAATTTTCACATTTTCCCAATTTCTAAGCCGTGTTCGCCCGTTCAAAATGGACCAAAACTGGCCGACAGTTTTTCACAGAGTTTCAGCTTTTTCTCGGGTGAGAAATGTGACCCTAAATAGCTCTAAACTTGTCTGAAATTGATTGGAATGCTGAAATTGGAAATTTTGGGCTCCCAAAGTCACCACTTTTGGCGCCAAAAAACCGCCCAAAATGCAGTTTGGTCCTACCGATTCCAGTTTGGCCAATTTTAGCATTTTTGGAATGCTGGGATTCGATATTTTGAGCTGCAGAGAGTTTTGCTTCAAAATTTGACTTCGAGTTCACTTTTGGTGCCAAAAACCTGCTTAAAATGCTGAATTTCCTCATTTTTCGCAAAAAATTTCGACCTTTCAATGCGGCCGAAATGGTCCAAAATTGTCGAAAAACGAATCAGATTTTTGGCAACATTTTTTGATCCAAAAAAGCTGAAAATTTGGCTGAAACGAATTGTGAGCTACTTTAGCCCTTTTCAGCTAAACCTAGAGCTCAAATCTCCAAAGATTTTCAGAGCTAAAAGTGGCGAATTTCGTCGAAATTCAAAAATCCAAAGGATGCCGAGAATCCATTCAAATCTCTCTTTCTCACAATATTAATATGATGACTTAGCCCATTCATCGTCGTCGGGCAATGAGGCAACGATAACAATCTCGCGGCTATTCTCTTTTTCTTCGGAAAGTCATCAAATTTCGAGGAAGATGATGATGATGATGAGAAGAAGACGTCGGAAGAGAGAGAGGAGATCCATCATTTTTCAATTATGCTGTGTGTTCTTAGATTCAGC</canonical>
            <polymorphic>TTTTGGCTCATAATGTTTGGGACTCATTTTGGACCATTTTCCCAAGTTTGGAGACATTTTTGCGTTCCAAAATTGTCCGAAAAGAGCTGCAAATCTGGCTGAAATAGTAGTCGCGAATTTGAAGCAATTTTTCTGCTGATCTGAAATGATGCGAAAGTTCTGAAAATTCGGTTGAAACGAATTTTCACATTTTCCCAATTTCTAAGCCGTGTTCGCCCGTTCAAAATGGACCAAAACTGGCCGACAGTTTTTCACAGAGTTTCAGCTTTTTCTCGGGTGAGAAATGTGACCCTAAATAGCTCTAAACTTGTCTGAAATTGATTGGAATGCTGAAATTGGAAATTTTGGGCTCCCAAAGTCACCACTTTTGGCGCCAAAAAACCGCCCAAAATGCAGTTTGGTCCTACCGATTCCAGTTTGGCCAATTTTAGCATTTTTGGAATGCTGGGATTCGATATTTTGAGCTGCAGAGAGTTTTGCTTCAAAATTTGACTTCGAGYTCACTTTTGGTGCCAAAAACCTGCTTAAAATGCTGAATTTCCTCATTTTTCGCAAAAAATTTCGACCTTTCAATGCGGCCGAAATGGTCCAAAATTGTCGAAAAACGAATCAGATTTTTGGCAACATTTTTTGATCCAAAAAAGCTGAAAATTTGGCTGAAACGAATTGTGAGCTACTTTAGCCCTTTTCAGCTAAACCTAGAGCTCAAATCTCCAAAGATTTTCAGAGCTAAAAGTGGCGAATTTCGTCGAAATTCAAAAATCCAAAGGATGCCGAGAATCCATTCAAATCTCTCTTTCTCACAATATTAATATGATGACTTAGCCCATTCATCGTCGTCGGGCAATGAGGCAACGATAACAATCTCGCGGCTATTCTCTTTTTCTTCGGAAAGTCATCAAATTTCGAGGAAGATGATGATGATGATGAGAAGAAGACGTCGGAAGAGAGAGAGGAGATCCATCATTTTTCAATTATGCTGTGTGTTCTTAGATTCAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGGGATTCGATATTTTGAG</pcr_primer_p1>
		<pcr_primer_p2>TAGCTGAAAAGGGCTAAAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTGGGATTCGATATTTTGAGCTGCAGAGAGTTTTGCTTCAAAATTTGACTTCGAGTTCACTTTTGGTGCCAAAAACCTGCTTAAAATGCTGAATTTCCTCATTTTTCGCAAAAAATTTCGACCTTTCAATGCGGCCGAAATGGTCCAAAATTGTCGAAAAACGAATCAGATTTTTGGCAACATTTTTTGATCCAAAAAAGCTGAAAATTTGGCTGAAACGAATTGTGAGCTACTTTAGCCCTTTTCAGCTA</canonical_amplicon>
		<polymorphic_amplicon>CTGGGATTCGATATTTTGAGCTGCAGAGAGTTTTGCTTCAAAATTTGACTTCGAGYTCACTTTTGGTGCCAAAAACCTGCTTAAAATGCTGAATTTCCTCATTTTTCGCAAAAAATTTCGACCTTTCAATGCGGCCGAAATGGTCCAAAATTGTCGAAAAACGAATCAGATTTTTGGCAACATTTTTTGATCCAAAAAAGCTGAAAATTTGGCTGAAACGAATTGTGAGCTACTTTAGCCCTTTTCAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2294</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>257278</contig_pos>
        <strand></strand>
        <context>TATTTTGAGC[T/C]GCAGAGAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTTTGGCCAATTTTAGCATTTTTGGAATGCTGGGATTCGATATTTTGAGC</left_flank>
        <right_flank>GCAGAGAGTTTTGCTTCAAAATTTGACTTCGAGTTCACTTTTGGTGCCAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCTAGGCGTTTTCCTCGAACTTTTGGCCAATTTTTGGCTCATAATGTTTGGGACTCATTTTGGACCATTTTCCCAAGTTTGGAGACATTTTTGCGTTCCAAAATTGTCCGAAAAGAGCTGCAAATCTGGCTGAAATAGTAGTCGCGAATTTGAAGCAATTTTTCTGCTGATCTGAAATGATGCGAAAGTTCTGAAAATTCGGTTGAAACGAATTTTCACATTTTCCCAATTTCTAAGCCGTGTTCGCCCGTTCAAAATGGACCAAAACTGGCCGACAGTTTTTCACAGAGTTTCAGCTTTTTCTCGGGTGAGAAATGTGACCCTAAATAGCTCTAAACTTGTCTGAAATTGATTGGAATGCTGAAATTGGAAATTTTGGGCTCCCAAAGTCACCACTTTTGGCGCCAAAAAACCGCCCAAAATGCAGTTTGGTCCTACCGATTCCAGTTTGGCCAATTTTAGCATTTTTGGAATGCTGGGATTCGATATTTTGAGCTGCAGAGAGTTTTGCTTCAAAATTTGACTTCGAGTTCACTTTTGGTGCCAAAAACCTGCTTAAAATGCTGAATTTCCTCATTTTTCGCAAAAAATTTCGACCTTTCAATGCGGCCGAAATGGTCCAAAATTGTCGAAAAACGAATCAGATTTTTGGCAACATTTTTTGATCCAAAAAAGCTGAAAATTTGGCTGAAACGAATTGTGAGCTACTTTAGCCCTTTTCAGCTAAACCTAGAGCTCAAATCTCCAAAGATTTTCAGAGCTAAAAGTGGCGAATTTCGTCGAAATTCAAAAATCCAAAGGATGCCGAGAATCCATTCAAATCTCTCTTTCTCACAATATTAATATGATGACTTAGCCCATTCATCGTCGTCGGGCAATGAGGCAACGATAACAATCTCGCGGCTATTCTCTTTTTCTTCGGAAAGTCATCAAATTTCGAGGAAGATGATGATGATGATGAGAAGAAGACGTCGGAAGAGAGAGAGGAGATCCATCA</canonical>
            <polymorphic>ATTTCTAGGCGTTTTCCTCGAACTTTTGGCCAATTTTTGGCTCATAATGTTTGGGACTCATTTTGGACCATTTTCCCAAGTTTGGAGACATTTTTGCGTTCCAAAATTGTCCGAAAAGAGCTGCAAATCTGGCTGAAATAGTAGTCGCGAATTTGAAGCAATTTTTCTGCTGATCTGAAATGATGCGAAAGTTCTGAAAATTCGGTTGAAACGAATTTTCACATTTTCCCAATTTCTAAGCCGTGTTCGCCCGTTCAAAATGGACCAAAACTGGCCGACAGTTTTTCACAGAGTTTCAGCTTTTTCTCGGGTGAGAAATGTGACCCTAAATAGCTCTAAACTTGTCTGAAATTGATTGGAATGCTGAAATTGGAAATTTTGGGCTCCCAAAGTCACCACTTTTGGCGCCAAAAAACCGCCCAAAATGCAGTTTGGTCCTACCGATTCCAGTTTGGCCAATTTTAGCATTTTTGGAATGCTGGGATTCGATATTTTGAGCYGCAGAGAGTTTTGCTTCAAAATTTGACTTCGAGTTCACTTTTGGTGCCAAAAACCTGCTTAAAATGCTGAATTTCCTCATTTTTCGCAAAAAATTTCGACCTTTCAATGCGGCCGAAATGGTCCAAAATTGTCGAAAAACGAATCAGATTTTTGGCAACATTTTTTGATCCAAAAAAGCTGAAAATTTGGCTGAAACGAATTGTGAGCTACTTTAGCCCTTTTCAGCTAAACCTAGAGCTCAAATCTCCAAAGATTTTCAGAGCTAAAAGTGGCGAATTTCGTCGAAATTCAAAAATCCAAAGGATGCCGAGAATCCATTCAAATCTCTCTTTCTCACAATATTAATATGATGACTTAGCCCATTCATCGTCGTCGGGCAATGAGGCAACGATAACAATCTCGCGGCTATTCTCTTTTTCTTCGGAAAGTCATCAAATTTCGAGGAAGATGATGATGATGATGAGAAGAAGACGTCGGAAGAGAGAGAGGAGATCCATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>237 180 179 165 120 34 29 25 19 12</canonical_bands>
                <polymorphic_bands>345 237 179 120 34 29 25 19 12</polymorphic_bands>
            </assay>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTGCAG</site>
                <isoschizomers>
                    <enzyme>BloHII</enzyme>
                    <enzyme>BstMAI</enzyme>
                    <enzyme>PstI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>114 108 96 94 80 72 66 50 47 43 34 34 29 25 25 17 12 12 12 11 10 9</canonical_bands>
                <polymorphic_bands>157 108 96 94 80 72 66 50 47 34 34 29 25 25 17 12 12 12 11 10 9</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>499 304 123 74</canonical_bands>
                <polymorphic_bands>573 304 123</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>502 378 120</canonical_bands>
                <polymorphic_bands>880 120</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTAAACTTGTCTGAAATTGATTG</pcr_primer_p1>
		<pcr_primer_p2>CGAAAAATGAGGAAATTCAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCTAAACTTGTCTGAAATTGATTGGAATGCTGAAATTGGAAATTTTGGGCTCCCAAAGTCACCACTTTTGGCGCCAAAAAACCGCCCAAAATGCAGTTTGGTCCTACCGATTCCAGTTTGGCCAATTTTAGCATTTTTGGAATGCTGGGATTCGATATTTTGAGCTGCAGAGAGTTTTGCTTCAAAATTTGACTTCGAGTTCACTTTTGGTGCCAAAAACCTGCTTAAAATGCTGAATTTCCTCATTTTTCG</canonical_amplicon>
		<polymorphic_amplicon>TCTAAACTTGTCTGAAATTGATTGGAATGCTGAAATTGGAAATTTTGGGCTCCCAAAGTCACCACTTTTGGCGCCAAAAAACCGCCCAAAATGCAGTTTGGTCCTACCGATTCCAGTTTGGCCAATTTTAGCATTTTTGGAATGCTGGGATTCGATATTTTGAGCYGCAGAGAGTTTTGCTTCAAAATTTGACTTCGAGTTCACTTTTGGTGCCAAAAACCTGCTTAAAATGCTGAATTTCCTCATTTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2295</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>257173</contig_pos>
        <strand></strand>
        <context>TCCCAAAGTC[A/G]CCACTTTTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGAAATTGATTGGAATGCTGAAATTGGAAATTTTGGGCTCCCAAAGTC</left_flank>
        <right_flank>CCACTTTTGGCGCCAAAAAACCGCCCAAAATGCAGTTTGGTCCTACCGAT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTTATCTTGAATTTTCCAATATTTGCTCAAAAAAGAGCTCCGGAGGTTTTTTTTCGCCGTATTTAAAGTTAGTCACCCCCCAACCTACGCCTATAAAATTGAAATTTCTAGGCGTTTTCCTCGAACTTTTGGCCAATTTTTGGCTCATAATGTTTGGGACTCATTTTGGACCATTTTCCCAAGTTTGGAGACATTTTTGCGTTCCAAAATTGTCCGAAAAGAGCTGCAAATCTGGCTGAAATAGTAGTCGCGAATTTGAAGCAATTTTTCTGCTGATCTGAAATGATGCGAAAGTTCTGAAAATTCGGTTGAAACGAATTTTCACATTTTCCCAATTTCTAAGCCGTGTTCGCCCGTTCAAAATGGACCAAAACTGGCCGACAGTTTTTCACAGAGTTTCAGCTTTTTCTCGGGTGAGAAATGTGACCCTAAATAGCTCTAAACTTGTCTGAAATTGATTGGAATGCTGAAATTGGAAATTTTGGGCTCCCAAAGTCACCACTTTTGGCGCCAAAAAACCGCCCAAAATGCAGTTTGGTCCTACCGATTCCAGTTTGGCCAATTTTAGCATTTTTGGAATGCTGGGATTCGATATTTTGAGCTGCAGAGAGTTTTGCTTCAAAATTTGACTTCGAGTTCACTTTTGGTGCCAAAAACCTGCTTAAAATGCTGAATTTCCTCATTTTTCGCAAAAAATTTCGACCTTTCAATGCGGCCGAAATGGTCCAAAATTGTCGAAAAACGAATCAGATTTTTGGCAACATTTTTTGATCCAAAAAAGCTGAAAATTTGGCTGAAACGAATTGTGAGCTACTTTAGCCCTTTTCAGCTAAACCTAGAGCTCAAATCTCCAAAGATTTTCAGAGCTAAAAGTGGCGAATTTCGTCGAAATTCAAAAATCCAAAGGATGCCGAGAATCCATTCAAATCTCTCTTTCTCACAATATTAATATGATGACTTAGCCCATTCATCGTCGTCGGGCAATGAGGCAACGATAA</canonical>
            <polymorphic>CTGTTATCTTGAATTTTCCAATATTTGCTCAAAAAAGAGCTCCGGAGGTTTTTTTTCGCCGTATTTAAAGTTAGTCACCCCCCAACCTACGCCTATAAAATTGAAATTTCTAGGCGTTTTCCTCGAACTTTTGGCCAATTTTTGGCTCATAATGTTTGGGACTCATTTTGGACCATTTTCCCAAGTTTGGAGACATTTTTGCGTTCCAAAATTGTCCGAAAAGAGCTGCAAATCTGGCTGAAATAGTAGTCGCGAATTTGAAGCAATTTTTCTGCTGATCTGAAATGATGCGAAAGTTCTGAAAATTCGGTTGAAACGAATTTTCACATTTTCCCAATTTCTAAGCCGTGTTCGCCCGTTCAAAATGGACCAAAACTGGCCGACAGTTTTTCACAGAGTTTCAGCTTTTTCTCGGGTGAGAAATGTGACCCTAAATAGCTCTAAACTTGTCTGAAATTGATTGGAATGCTGAAATTGGAAATTTTGGGCTCCCAAAGTCRCCACTTTTGGCGCCAAAAAACCGCCCAAAATGCAGTTTGGTCCTACCGATTCCAGTTTGGCCAATTTTAGCATTTTTGGAATGCTGGGATTCGATATTTTGAGCTGCAGAGAGTTTTGCTTCAAAATTTGACTTCGAGTTCACTTTTGGTGCCAAAAACCTGCTTAAAATGCTGAATTTCCTCATTTTTCGCAAAAAATTTCGACCTTTCAATGCGGCCGAAATGGTCCAAAATTGTCGAAAAACGAATCAGATTTTTGGCAACATTTTTTGATCCAAAAAAGCTGAAAATTTGGCTGAAACGAATTGTGAGCTACTTTAGCCCTTTTCAGCTAAACCTAGAGCTCAAATCTCCAAAGATTTTCAGAGCTAAAAGTGGCGAATTTCGTCGAAATTCAAAAATCCAAAGGATGCCGAGAATCCATTCAAATCTCTCTTTCTCACAATATTAATATGATGACTTAGCCCATTCATCGTCGTCGGGCAATGAGGCAACGATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>249 159 139 77 73 67 65 58 43 25 24 9 9 3</canonical_bands>
                <polymorphic_bands>249 159 139 77 76 67 65 58 43 25 24 9 9</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 351 73 72</canonical_bands>
                <polymorphic_bands>576 351 73</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>504 351 73 72</canonical_bands>
                <polymorphic_bands>576 351 73</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCACAGAGTTTCAGCTTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>CAAATTTTGAAGCAAAACTCTC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TCACAGAGTTTCAGCTTTTTCTCGGGTGAGAAATGTGACCCTAAATAGCTCTAAACTTGTCTGAAATTGATTGGAATGCTGAAATTGGAAATTTTGGGCTCCCAAAGTCACCACTTTTGGCGCCAAAAAACCGCCCAAAATGCAGTTTGGTCCTACCGATTCCAGTTTGGCCAATTTTAGCATTTTTGGAATGCTGGGATTCGATATTTTGAGCTGCAGAGAGTTTTGCTTCAAAATTTG</canonical_amplicon>
		<polymorphic_amplicon>TCACAGAGTTTCAGCTTTTTCTCGGGTGAGAAATGTGACCCTAAATAGCTCTAAACTTGTCTGAAATTGATTGGAATGCTGAAATTGGAAATTTTGGGCTCCCAAAGTCRCCACTTTTGGCGCCAAAAAACCGCCCAAAATGCAGTTTGGTCCTACCGATTCCAGTTTGGCCAATTTTAGCATTTTTGGAATGCTGGGATTCGATATTTTGAGCTGCAGAGAGTTTTGCTTCAAAATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2296</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>21685</contig_pos>
        <strand>+</strand>
        <context>TAATGTACGC[A/G]ATTCCTCAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTACCATTCCGTTTGATTTCACAATACTCCTTGAACCAATAATGTACGC</left_flank>
        <right_flank>ATTCCTCAATAGAGCGCGATTGCCAAAAAAAAAAAACAAAAAAAACTCAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAATATCTCGTTTTAGAGTCAAGTTAGCAGCCGGCCCGTTCTCAACTATGCTATTTACATTCGGTTTGGTCTACAGTAACGTTTAAACTACCAGATTACTGTATGCTTCACAAGCTTTTCGAATTTTGGAGAACACTTTTGTCAGAAATCTAAAATTTTTCTCTTTTTGTTACTAGAATTTTCGGAATTTTGAAAAACTGAAAAACGATTCAAAATGTTCTGTTTCATCCATCTTTCTTTAATACTAACAACGATTTTTAACACTTCTGAATTCGATTAAAATGGAATTTCCAAAAATGTTTGATTTTGTCGAAAAAGGTTGAAAAACTTTGAAGTTCTGAACTAAAATCGTTTTCCGGAAAATTCGAAAAGTAAGAAAATTTCATTTTCTCTTATTGCGGTCTCAAAACGATGAATTCTAACTGGATTACTGTACTTTTCAAAACTATTACCATTCCGTTTGATTTCACAATACTCCTTGAACCAATAATGTACGCGATTCCTCAATAGAGCGCGATTGCCAAAAAAAAAAAACAAAAAAAACTCACTATCACTCAACGGCTGCGGGTAGTACTGTGCCGGTGGAGCATTTTGTGCTCCATACTGTGCATTCGCACAATAGAAAGCACAAATGCTCAGCAAGACGAGGATAGAGGAATTCATGGAGAATGATAAGGAAATTCTGAGATCTTGGAGGGGTTTTTATAGTGGAAGGATTTTTGATTGGATTTTTCGATTAGGCTCCAGGAAAAAAATTCTGGGAGGGAATTTTTTTTCTGTTTCCCATGATTCACTTTTATCGTCTTCCACCCACACAGATGCAGTTGGTTCAATTTGGCTGTCTGAAATTCCAACGGAAACTTGAAATATGAAACTGGAATCTTGACTGCGTAGCTTGACTTTTAGATTACTGTAGACCGAAAACTGACTGAATAATCTTCAAGGTTACTGTAGAGAAAAGTTCCGTTGCCTTTATTGGGTTACTGTATGTTACTGTA</canonical>
            <polymorphic>CTGAATATCTCGTTTTAGAGTCAAGTTAGCAGCCGGCCCGTTCTCAACTATGCTATTTACATTCGGTTTGGTCTACAGTAACGTTTAAACTACCAGATTACTGTATGCTTCACAAGCTTTTCGAATTTTGGAGAACACTTTTGTCAGAAATCTAAAATTTTTCTCTTTTTGTTACTAGAATTTTCGGAATTTTGAAAAACTGAAAAACGATTCAAAATGTTCTGTTTCATCCATCTTTCTTTAATACTAACAACGATTTTTAACACTTCTGAATTCGATTAAAATGGAATTTCCAAAAATGTTTGATTTTGTCGAAAAAGGTTGAAAAACTTTGAAGTTCTGAACTAAAATCGTTTTCCGGAAAATTCGAAAAGTAAGAAAATTTCATTTTCTCTTATTGCGGTCTCAAAACGATGAATTCTAACTGGATTACTGTACTTTTCAAAACTATTACCATTCCGTTTGATTTCACAATACTCCTTGAACCAATAATGTACGCRATTCCTCAATAGAGCGCGATTGCCAAAAAAAAAAAACAAAAAAAACTCACTATCACTCAACGGCTGCGGGTAGTACTGTGCCGGTGGAGCATTTTGTGCTCCATACTGTGCATTCGCACAATAGAAAGCACAAATGCTCAGCAAGACGAGGATAGAGGAATTCATGGAGAATGATAAGGAAATTCTGAGATCTTGGAGGGGTTTTTATAGTGGAAGGATTTTTGATTGGATTTTTCGATTAGGCTCCAGGAAAAAAATTCTGGGAGGGAATTTTTTTTCTGTTTCCCATGATTCACTTTTATCGTCTTCCACCCACACAGATGCAGTTGGTTCAATTTGGCTGTCTGAAATTCCAACGGAAACTTGAAATATGAAACTGGAATCTTGACTGCGTAGCTTGACTTTTAGATTACTGTAGACCGAAAACTGACTGAATAATCTTCAAGGTTACTGTAGAGAAAAGTTCCGTTGCCTTTATTGGGTTACTGTATGTTACTGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>498 484 18</canonical_bands>
                <polymorphic_bands>516 484</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>291 290 191 120 90 18</canonical_bands>
                <polymorphic_bands>581 191 120 90 18</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>291 290 209 120 90</canonical_bands>
                <polymorphic_bands>581 209 120 90</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTATTACCATTCCGTTTGATTT</pcr_primer_p1>
		<pcr_primer_p2>CCAAGATCTCAGAATTTCCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTATTACCATTCCGTTTGATTTCACAATACTCCTTGAACCAATAATGTACGCGATTCCTCAATAGAGCGCGATTGCCAAAAAAAAAAAACAAAAAAAACTCACTATCACTCAACGGCTGCGGGTAGTACTGTGCCGGTGGAGCATTTTGTGCTCCATACTGTGCATTCGCACAATAGAAAGCACAAATGCTCAGCAAGACGAGGATAGAGGAATTCATGGAGAATGATAAGGAAATTCTGAGATCTTGG</canonical_amplicon>
		<polymorphic_amplicon>ACTATTACCATTCCGTTTGATTTCACAATACTCCTTGAACCAATAATGTACGCRATTCCTCAATAGAGCGCGATTGCCAAAAAAAAAAAACAAAAAAAACTCACTATCACTCAACGGCTGCGGGTAGTACTGTGCCGGTGGAGCATTTTGTGCTCCATACTGTGCATTCGCACAATAGAAAGCACAAATGCTCAGCAAGACGAGGATAGAGGAATTCATGGAGAATGATAAGGAAATTCTGAGATCTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2297</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>21955</contig_pos>
        <strand>+</strand>
        <context>CTGGGAGGRA[A/T]TTTTTTTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTGATTGGATTTTTCGATTAGGCTCCAGGAAAAAAATTCTGGGAGGGA</left_flank>
        <right_flank>TTTTTTTTCTGTTTCCCATGATTCACTTTTATCGTCTTCCACCCACACAG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTCGATTAAAATGGAATTTCCAAAAATGTTTGATTTTGTCGAAAAAGGTTGAAAAACTTTGAAGTTCTGAACTAAAATCGTTTTCCGGAAAATTCGAAAAGTAAGAAAATTTCATTTTCTCTTATTGCGGTCTCAAAACGATGAATTCTAACTGGATTACTGTACTTTTCAAAACTATTACCATTCCGTTTGATTTCACAATACTCCTTGAACCAATAATGTACGCGATTCCTCAATAGAGCGCGATTGCCAAAAAAAAAAAACAAAAAAAACTCACTATCACTCAACGGCTGCGGGTAGTACTGTGCCGGTGGAGCATTTTGTGCTCCATACTGTGCATTCGCACAATAGAAAGCACAAATGCTCAGCAAGACGAGGATAGAGGAATTCATGGAGAATGATAAGGAAATTCTGAGATCTTGGAGGGGTTTTTATAGTGGAAGGATTTTTGATTGGATTTTTCGATTAGGCTCCAGGAAAAAAATTCTGGGAGGGAATTTTTTTTCTGTTTCCCATGATTCACTTTTATCGTCTTCCACCCACACAGATGCAGTTGGTTCAATTTGGCTGTCTGAAATTCCAACGGAAACTTGAAATATGAAACTGGAATCTTGACTGCGTAGCTTGACTTTTAGATTACTGTAGACCGAAAACTGACTGAATAATCTTCAAGGTTACTGTAGAGAAAAGTTCCGTTGCCTTTATTGGGTTACTGTATGTTACTGTAGACCCAAACTGAACGAAAAATACAGTAATATAGTGAATATCCATCCTTATTTTCAAAAAGTTTAAAATTTCAATTTTTGGAAGTTTCTAGAAATTTTATTGGTCTCGAAACGGAATAAATGCTTTTTTGGTTGCAATGAGTTGTGATATAAACAATTTTTTTTGAAAATTCAAAAAAAACTTTTAATACAACATTTTTTGAATTTTTTAAATTGTTATTGTGGAGAAGATTTCTGGAATTCCTGAACATTTTTTCTAGGAAAAATATTAT</canonical>
            <polymorphic>GAATTCGATTAAAATGGAATTTCCAAAAATGTTTGATTTTGTCGAAAAAGGTTGAAAAACTTTGAAGTTCTGAACTAAAATCGTTTTCCGGAAAATTCGAAAAGTAAGAAAATTTCATTTTCTCTTATTGCGGTCTCAAAACGATGAATTCTAACTGGATTACTGTACTTTTCAAAACTATTACCATTCCGTTTGATTTCACAATACTCCTTGAACCAATAATGTACGCGATTCCTCAATAGAGCGCGATTGCCAAAAAAAAAAAACAAAAAAAACTCACTATCACTCAACGGCTGCGGGTAGTACTGTGCCGGTGGAGCATTTTGTGCTCCATACTGTGCATTCGCACAATAGAAAGCACAAATGCTCAGCAAGACGAGGATAGAGGAATTCATGGAGAATGATAAGGAAATTCTGAGATCTTGGAGGGGTTTTTATAGTGGAAGGATTTTTGATTGGATTTTTCGATTAGGCTCCAGGAAAAAAATTCTGGGAGGGAWTTTTTTTTCTGTTTCCCATGATTCACTTTTATCGTCTTCCACCCACACAGATGCAGTTGGTTCAATTTGGCTGTCTGAAATTCCAACGGAAACTTGAAATATGAAACTGGAATCTTGACTGCGTAGCTTGACTTTTAGATTACTGTAGACCGAAAACTGACTGAATAATCTTCAAGGTTACTGTAGAGAAAAGTTCCGTTGCCTTTATTGGGTTACTGTATGTTACTGTAGACCCAAACTGAACGAAAAATACAGTAATATAGTGAATATCCATCCTTATTTTCAAAAAGTTTAAAATTTCAATTTTTGGAAGTTTCTAGAAATTTTATTGGTCTCGAAACGGAATAAATGCTTTTTTGGTTGCAATGAGTTGTGATATAAACAATTTTTTTTGAAAATTCAAAAAAAACTTTTAATACAACATTTTTTGAATTTTTTAAATTGTTATTGTGGAGAAGATTTCTGGAATTCCTGAACATTTTTTCTAGGAAAAATATTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>242 217 80 76 75 75 36 36 34 34 26 22 17 16 13 1</canonical_bands>
                <polymorphic_bands>242 217 93 76 75 75 36 36 34 34 26 22 17 16 1</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>242 217 76 75 65 62 36 34 34 27 22 20 17 16 15 13 13 9 6 1</canonical_bands>
                <polymorphic_bands>242 217 78 76 75 62 36 34 34 27 22 20 17 16 15 13 9 6 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTTTATAGTGGAAGGATTTT</pcr_primer_p1>
		<pcr_primer_p2>AACCTTGAAGATTATTCAGTCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTTTTTATAGTGGAAGGATTTTTGATTGGATTTTTCGATTAGGCTCCAGGAAAAAAATTCTGGGAGGGAATTTTTTTTCTGTTTCCCATGATTCACTTTTATCGTCTTCCACCCACACAGATGCAGTTGGTTCAATTTGGCTGTCTGAAATTCCAACGGAAACTTGAAATATGAAACTGGAATCTTGACTGCGTAGCTTGACTTTTAGATTACTGTAGACCGAAAACTGACTGAATAATCTTCAAGGTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTTTTATAGTGGAAGGATTTTTGATTGGATTTTTCGATTAGGCTCCAGGAAAAAAATTCTGGGAGGGAWTTTTTTTTCTGTTTCCCATGATTCACTTTTATCGTCTTCCACCCACACAGATGCAGTTGGTTCAATTTGGCTGTCTGAAATTCCAACGGAAACTTGAAATATGAAACTGGAATCTTGACTGCGTAGCTTGACTTTTAGATTACTGTAGACCGAAAACTGACTGAATAATCTTCAAGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2298</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>22010</contig_pos>
        <strand>+</strand>
        <context>ACACAGATGC[A/T]GTTGGTTCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTCTGTTTCCCATGATTCACTTTTATCGTCTTCCACCCACACAGATGC</left_flank>
        <right_flank>GTTGGTTCAATTTGGCTGTCTGAAATTCCAACGGAAACTTGAAATATGAA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACTTTGAAGTTCTGAACTAAAATCGTTTTCCGGAAAATTCGAAAAGTAAGAAAATTTCATTTTCTCTTATTGCGGTCTCAAAACGATGAATTCTAACTGGATTACTGTACTTTTCAAAACTATTACCATTCCGTTTGATTTCACAATACTCCTTGAACCAATAATGTACGCGATTCCTCAATAGAGCGCGATTGCCAAAAAAAAAAAACAAAAAAAACTCACTATCACTCAACGGCTGCGGGTAGTACTGTGCCGGTGGAGCATTTTGTGCTCCATACTGTGCATTCGCACAATAGAAAGCACAAATGCTCAGCAAGACGAGGATAGAGGAATTCATGGAGAATGATAAGGAAATTCTGAGATCTTGGAGGGGTTTTTATAGTGGAAGGATTTTTGATTGGATTTTTCGATTAGGCTCCAGGAAAAAAATTCTGGGAGGGAATTTTTTTTCTGTTTCCCATGATTCACTTTTATCGTCTTCCACCCACACAGATGCAGTTGGTTCAATTTGGCTGTCTGAAATTCCAACGGAAACTTGAAATATGAAACTGGAATCTTGACTGCGTAGCTTGACTTTTAGATTACTGTAGACCGAAAACTGACTGAATAATCTTCAAGGTTACTGTAGAGAAAAGTTCCGTTGCCTTTATTGGGTTACTGTATGTTACTGTAGACCCAAACTGAACGAAAAATACAGTAATATAGTGAATATCCATCCTTATTTTCAAAAAGTTTAAAATTTCAATTTTTGGAAGTTTCTAGAAATTTTATTGGTCTCGAAACGGAATAAATGCTTTTTTGGTTGCAATGAGTTGTGATATAAACAATTTTTTTTGAAAATTCAAAAAAAACTTTTAATACAACATTTTTTGAATTTTTTAAATTGTTATTGTGGAGAAGATTTCTGGAATTCCTGAACATTTTTTCTAGGAAAAATATTATCCAAAATCTAGCAACTTCTTTAATACAACGAATTCGAATTTATCCCAGAAAATAA</canonical>
            <polymorphic>AAAACTTTGAAGTTCTGAACTAAAATCGTTTTCCGGAAAATTCGAAAAGTAAGAAAATTTCATTTTCTCTTATTGCGGTCTCAAAACGATGAATTCTAACTGGATTACTGTACTTTTCAAAACTATTACCATTCCGTTTGATTTCACAATACTCCTTGAACCAATAATGTACGCGATTCCTCAATAGAGCGCGATTGCCAAAAAAAAAAAACAAAAAAAACTCACTATCACTCAACGGCTGCGGGTAGTACTGTGCCGGTGGAGCATTTTGTGCTCCATACTGTGCATTCGCACAATAGAAAGCACAAATGCTCAGCAAGACGAGGATAGAGGAATTCATGGAGAATGATAAGGAAATTCTGAGATCTTGGAGGGGTTTTTATAGTGGAAGGATTTTTGATTGGATTTTTCGATTAGGCTCCAGGAAAAAAATTCTGGGAGGGAATTTTTTTTCTGTTTCCCATGATTCACTTTTATCGTCTTCCACCCACACAGATGCWGTTGGTTCAATTTGGCTGTCTGAAATTCCAACGGAAACTTGAAATATGAAACTGGAATCTTGACTGCGTAGCTTGACTTTTAGATTACTGTAGACCGAAAACTGACTGAATAATCTTCAAGGTTACTGTAGAGAAAAGTTCCGTTGCCTTTATTGGGTTACTGTATGTTACTGTAGACCCAAACTGAACGAAAAATACAGTAATATAGTGAATATCCATCCTTATTTTCAAAAAGTTTAAAATTTCAATTTTTGGAAGTTTCTAGAAATTTTATTGGTCTCGAAACGGAATAAATGCTTTTTTGGTTGCAATGAGTTGTGATATAAACAATTTTTTTTGAAAATTCAAAAAAAACTTTTAATACAACATTTTTTGAATTTTTTAAATTGTTATTGTGGAGAAGATTTCTGGAATTCCTGAACATTTTTTCTAGGAAAAATATTATCCAAAATCTAGCAACTTCTTTAATACAACGAATTCGAATTTATCCCAGAAAATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>310 285 213 192</canonical_bands>
                <polymorphic_bands>523 285 192</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTTTATAGTGGAAGGATTTT</pcr_primer_p1>
		<pcr_primer_p2>AACCTTGAAGATTATTCAGTCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTTTTTATAGTGGAAGGATTTTTGATTGGATTTTTCGATTAGGCTCCAGGAAAAAAATTCTGGGAGGGAATTTTTTTTCTGTTTCCCATGATTCACTTTTATCGTCTTCCACCCACACAGATGCAGTTGGTTCAATTTGGCTGTCTGAAATTCCAACGGAAACTTGAAATATGAAACTGGAATCTTGACTGCGTAGCTTGACTTTTAGATTACTGTAGACCGAAAACTGACTGAATAATCTTCAAGGTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTTTTATAGTGGAAGGATTTTTGATTGGATTTTTCGATTAGGCTCCAGGAAAAAAATTCTGGGAGGGAATTTTTTTTCTGTTTCCCATGATTCACTTTTATCGTCTTCCACCCACACAGATGCWGTTGGTTCAATTTGGCTGTCTGAAATTCCAACGGAAACTTGAAATATGAAACTGGAATCTTGACTGCGTAGCTTGACTTTTAGATTACTGTAGACCGAAAACTGACTGAATAATCTTCAAGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2299</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>22068</contig_pos>
        <strand>+</strand>
        <context>GAAACTGGAA[G/T]CTTGACTGCG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAATTTGGCTGTCTGAAATTCCAACGGAAACTTGAAATATGAAACTGGAA</left_flank>
        <right_flank>CTTGACTGCGTAGCTTGACTTTTAGATTACTGTAGACCGAAAACTGACTG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCATTTTCTCTTATTGCGGTCTCAAAACGATGAATTCTAACTGGATTACTGTACTTTTCAAAACTATTACCATTCCGTTTGATTTCACAATACTCCTTGAACCAATAATGTACGCGATTCCTCAATAGAGCGCGATTGCCAAAAAAAAAAAACAAAAAAAACTCACTATCACTCAACGGCTGCGGGTAGTACTGTGCCGGTGGAGCATTTTGTGCTCCATACTGTGCATTCGCACAATAGAAAGCACAAATGCTCAGCAAGACGAGGATAGAGGAATTCATGGAGAATGATAAGGAAATTCTGAGATCTTGGAGGGGTTTTTATAGTGGAAGGATTTTTGATTGGATTTTTCGATTAGGCTCCAGGAAAAAAATTCTGGGAGGGAATTTTTTTTCTGTTTCCCATGATTCACTTTTATCGTCTTCCACCCACACAGATGCAGTTGGTTCAATTTGGCTGTCTGAAATTCCAACGGAAACTTGAAATATGAAACTGGAATCTTGACTGCGTAGCTTGACTTTTAGATTACTGTAGACCGAAAACTGACTGAATAATCTTCAAGGTTACTGTAGAGAAAAGTTCCGTTGCCTTTATTGGGTTACTGTATGTTACTGTAGACCCAAACTGAACGAAAAATACAGTAATATAGTGAATATCCATCCTTATTTTCAAAAAGTTTAAAATTTCAATTTTTGGAAGTTTCTAGAAATTTTATTGGTCTCGAAACGGAATAAATGCTTTTTTGGTTGCAATGAGTTGTGATATAAACAATTTTTTTTGAAAATTCAAAAAAAACTTTTAATACAACATTTTTTGAATTTTTTAAATTGTTATTGTGGAGAAGATTTCTGGAATTCCTGAACATTTTTTCTAGGAAAAATATTATCCAAAATCTAGCAACTTCTTTAATACAACGAATTCGAATTTATCCCAGAAAATAACCAAAAATGTTTTAGTTTTTTTAAAAATATTATTGTTGTCTGAGAAGAAAAAAAAGGT</canonical>
            <polymorphic>TTCATTTTCTCTTATTGCGGTCTCAAAACGATGAATTCTAACTGGATTACTGTACTTTTCAAAACTATTACCATTCCGTTTGATTTCACAATACTCCTTGAACCAATAATGTACGCGATTCCTCAATAGAGCGCGATTGCCAAAAAAAAAAAACAAAAAAAACTCACTATCACTCAACGGCTGCGGGTAGTACTGTGCCGGTGGAGCATTTTGTGCTCCATACTGTGCATTCGCACAATAGAAAGCACAAATGCTCAGCAAGACGAGGATAGAGGAATTCATGGAGAATGATAAGGAAATTCTGAGATCTTGGAGGGGTTTTTATAGTGGAAGGATTTTTGATTGGATTTTTCGATTAGGCTCCAGGAAAAAAATTCTGGGAGGGAATTTTTTTTCTGTTTCCCATGATTCACTTTTATCGTCTTCCACCCACACAGATGCAGTTGGTTCAATTTGGCTGTCTGAAATTCCAACGGAAACTTGAAATATGAAACTGGAAKCTTGACTGCGTAGCTTGACTTTTAGATTACTGTAGACCGAAAACTGACTGAATAATCTTCAAGGTTACTGTAGAGAAAAGTTCCGTTGCCTTTATTGGGTTACTGTATGTTACTGTAGACCCAAACTGAACGAAAAATACAGTAATATAGTGAATATCCATCCTTATTTTCAAAAAGTTTAAAATTTCAATTTTTGGAAGTTTCTAGAAATTTTATTGGTCTCGAAACGGAATAAATGCTTTTTTGGTTGCAATGAGTTGTGATATAAACAATTTTTTTTGAAAATTCAAAAAAAACTTTTAATACAACATTTTTTGAATTTTTTAAATTGTTATTGTGGAGAAGATTTCTGGAATTCCTGAACATTTTTTCTAGGAAAAATATTATCCAAAATCTAGCAACTTCTTTAATACAACGAATTCGAATTTATCCCAGAAAATAACCAAAAATGTTTTAGTTTTTTTAAAAATATTATTGTTGTCTGAGAAGAAAAAAAAGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>503 290 117 90</canonical_bands>
                <polymorphic_bands>593 290 117</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>501 203 142 129 17 8</canonical_bands>
                <polymorphic_bands>704 142 129 17 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 290 117 90</canonical_bands>
                <polymorphic_bands>593 290 117</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTTTATAGTGGAAGGATTTT</pcr_primer_p1>
		<pcr_primer_p2>AACCTTGAAGATTATTCAGTCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTTTTTATAGTGGAAGGATTTTTGATTGGATTTTTCGATTAGGCTCCAGGAAAAAAATTCTGGGAGGGAATTTTTTTTCTGTTTCCCATGATTCACTTTTATCGTCTTCCACCCACACAGATGCAGTTGGTTCAATTTGGCTGTCTGAAATTCCAACGGAAACTTGAAATATGAAACTGGAATCTTGACTGCGTAGCTTGACTTTTAGATTACTGTAGACCGAAAACTGACTGAATAATCTTCAAGGTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTTTTATAGTGGAAGGATTTTTGATTGGATTTTTCGATTAGGCTCCAGGAAAAAAATTCTGGGAGGGAATTTTTTTTCTGTTTCCCATGATTCACTTTTATCGTCTTCCACCCACACAGATGCAGTTGGTTCAATTTGGCTGTCTGAAATTCCAACGGAAACTTGAAATATGAAACTGGAAKCTTGACTGCGTAGCTTGACTTTTAGATTACTGTAGACCGAAAACTGACTGAATAATCTTCAAGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2300</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>24941</contig_pos>
        <strand>+</strand>
        <context>CTTCAAAGGG[A/C]TTCGCACCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTATTCGTCACTTTTAATCTCATCCCCTCCGTTTTATTCTTCAAAGGG</left_flank>
        <right_flank>TTCGCACCGACAATAACAGAAAAAGAAAGAGTTTCTTTTTTAATTTAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATTTTTACTGCTTCAGTAACCTGTAATAAGTTTCTAGTAGTACCTCTTGCCATTCAAACGGGAGAATTTTTTGAACATATATTTTTTTCTCGAAAATCCAGTGCTCTTTTGGTTCTTTGACCTCTTACACCTGACATGTCTGACATTTGAATCCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAGAAGAAGCAAGAGGGTCTTGGAAAGGTGATACATTTGAAATTCTCAGTTGGGCAAAGTTTTTGTTTGCAAAAAAAAAAAATCTTTTTGAATTTCCGTTTCAAAAGTTCCATGATTTCAAGAACAAAAATTATTTCCCAGTTCTAGCTTCATTTTTCAATCCGACACTTGCAACCGCATCGAGCTCAGGAGATTCAGAAACTTCGAGAAGCCTTTATTTTGCACTTTTGAAACGAATTCCATTTTATTCGTCACTTTTAATCTCATCCCCTCCGTTTTATTCTTCAAAGGGATTCGCACCGACAATAACAGAAAAAGAAAGAGTTTCTTTTTTAATTTAAAACTTTTTTTTCTTAAGCGTTAGGAGTTTTTTTGCAGGATCTTTCTCTCTTTAAATCTGAGAATTTTTCTCGGAAGTTTTGAAATTCAGGGTAGATCTTTTCTAATACTGTTTCAATCACTTTAGATTAGTTGAAAACTTTTTTGCGCTAATCATTAGAATAAATCTTTTTTTTGGTTTTAAGATAAATAGAATCACATTTCTGGTTATATATGTTACCTAATTGATGTTGACTTAATTACCTAAAATTGCACATTAATATTTCATTAGAAACAACTTCGTCCAATTATCTCTATCTTTTCTTACTTTCCGAGGAATTCTAACTTTTTTGAAGCTGACTTTGTAGCTTGTAAAATATACAGTAACTGTGTAATTCAAGGGTTACTGTAGACCAAACGGAAAAATTGGTTGTGAAAAGTACAGTAATCCAGTTAGAATGGATTTTTCGATTTT</canonical>
            <polymorphic>ACATTTTTACTGCTTCAGTAACCTGTAATAAGTTTCTAGTAGTACCTCTTGCCATTCAAACGGGAGAATTTTTTGAACATATATTTTTTTCTCGAAAATCCAGTGCTCTTTTGGTTCTTTGACCTCTTACACCTGACATGTCTGACATTTGAATCCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAGAAGAAGCAAGAGGGTCTTGGAAAGGTGATACATTTGAAATTCTCAGTTGGGCAAAGTTTTTGTTTGCAAAAAAAAAAAATCTTTTTGAATTTCCGTTTCAAAAGTTCCATGATTTCAAGAACAAAAATTATTTCCCAGTTCTAGCTTCATTTTTCAATCCGACACTTGCAACCGCATCGAGCTCAGGAGATTCAGAAACTTCGAGAAGCCTTTATTTTGCACTTTTGAAACGAATTCCATTTTATTCGTCACTTTTAATCTCATCCCCTCCGTTTTATTCTTCAAAGGGMTTCGCACCGACAATAACAGAAAAAGAAAGAGTTTCTTTTTTAATTTAAAACTTTTTTTTCTTAAGCGTTAGGAGTTTTTTTGCAGGATCTTTCTCTCTTTAAATCTGAGAATTTTTCTCGGAAGTTTTGAAATTCAGGGTAGATCTTTTCTAATACTGTTTCAATCACTTTAGATTAGTTGAAAACTTTTTTGCGCTAATCATTAGAATAAATCTTTTTTTTGGTTTTAAGATAAATAGAATCACATTTCTGGTTATATATGTTACCTAATTGATGTTGACTTAATTACCTAAAATTGCACATTAATATTTCATTAGAAACAACTTCGTCCAATTATCTCTATCTTTTCTTACTTTCCGAGGAATTCTAACTTTTTTGAAGCTGACTTTGTAGCTTGTAAAATATACAGTAACTGTGTAATTCAAGGGTTACTGTAGACCAAACGGAAAAATTGGTTGTGAAAAGTACAGTAATCCAGTTAGAATGGATTTTTCGATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>261 248 240 151 100</canonical_bands>
                <polymorphic_bands>340 261 248 151</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>261 248 240 151 100</canonical_bands>
                <polymorphic_bands>340 261 248 151</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAACAAAAATTATTTCCCAGTT</pcr_primer_p1>
		<pcr_primer_p2>AAACTCCTAACGCTTAAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAACAAAAATTATTTCCCAGTTCTAGCTTCATTTTTCAATCCGACACTTGCAACCGCATCGAGCTCAGGAGATTCAGAAACTTCGAGAAGCCTTTATTTTGCACTTTTGAAACGAATTCCATTTTATTCGTCACTTTTAATCTCATCCCCTCCGTTTTATTCTTCAAAGGGATTCGCACCGACAATAACAGAAAAAGAAAGAGTTTCTTTTTTAATTTAAAACTTTTTTTTCTTAAGCGTTAGGAGTTT</canonical_amplicon>
		<polymorphic_amplicon>AGAACAAAAATTATTTCCCAGTTCTAGCTTCATTTTTCAATCCGACACTTGCAACCGCATCGAGCTCAGGAGATTCAGAAACTTCGAGAAGCCTTTATTTTGCACTTTTGAAACGAATTCCATTTTATTCGTCACTTTTAATCTCATCCCCTCCGTTTTATTCTTCAAAGGGMTTCGCACCGACAATAACAGAAAAAGAAAGAGTTTCTTTTTTAATTTAAAACTTTTTTTTCTTAAGCGTTAGGAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2301</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>24911</contig_pos>
        <strand>+</strand>
        <context>CACTTTTAAT[A/C]TCATCCCCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTTATTTTGCACTTTTGAAACGAATTCCATTTTATTCGTCACTTTTAAT</left_flank>
        <right_flank>TCATCCCCTCCGTTTTATTCTTCAAAGGGATTCGCACCGACAATAACAGA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGTAGCAGTAAATAAGGTTCTATGAAAAACATTTTTACTGCTTCAGTAACCTGTAATAAGTTTCTAGTAGTACCTCTTGCCATTCAAACGGGAGAATTTTTTGAACATATATTTTTTTCTCGAAAATCCAGTGCTCTTTTGGTTCTTTGACCTCTTACACCTGACATGTCTGACATTTGAATCCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAGAAGAAGCAAGAGGGTCTTGGAAAGGTGATACATTTGAAATTCTCAGTTGGGCAAAGTTTTTGTTTGCAAAAAAAAAAAATCTTTTTGAATTTCCGTTTCAAAAGTTCCATGATTTCAAGAACAAAAATTATTTCCCAGTTCTAGCTTCATTTTTCAATCCGACACTTGCAACCGCATCGAGCTCAGGAGATTCAGAAACTTCGAGAAGCCTTTATTTTGCACTTTTGAAACGAATTCCATTTTATTCGTCACTTTTAATCTCATCCCCTCCGTTTTATTCTTCAAAGGGATTCGCACCGACAATAACAGAAAAAGAAAGAGTTTCTTTTTTAATTTAAAACTTTTTTTTCTTAAGCGTTAGGAGTTTTTTTGCAGGATCTTTCTCTCTTTAAATCTGAGAATTTTTCTCGGAAGTTTTGAAATTCAGGGTAGATCTTTTCTAATACTGTTTCAATCACTTTAGATTAGTTGAAAACTTTTTTGCGCTAATCATTAGAATAAATCTTTTTTTTGGTTTTAAGATAAATAGAATCACATTTCTGGTTATATATGTTACCTAATTGATGTTGACTTAATTACCTAAAATTGCACATTAATATTTCATTAGAAACAACTTCGTCCAATTATCTCTATCTTTTCTTACTTTCCGAGGAATTCTAACTTTTTTGAAGCTGACTTTGTAGCTTGTAAAATATACAGTAACTGTGTAATTCAAGGGTTACTGTAGACCAAACGGAAAAATTGGTTGTGAAAAGTACAG</canonical>
            <polymorphic>ACTGTAGCAGTAAATAAGGTTCTATGAAAAACATTTTTACTGCTTCAGTAACCTGTAATAAGTTTCTAGTAGTACCTCTTGCCATTCAAACGGGAGAATTTTTTGAACATATATTTTTTTCTCGAAAATCCAGTGCTCTTTTGGTTCTTTGACCTCTTACACCTGACATGTCTGACATTTGAATCCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAGAAGAAGCAAGAGGGTCTTGGAAAGGTGATACATTTGAAATTCTCAGTTGGGCAAAGTTTTTGTTTGCAAAAAAAAAAAATCTTTTTGAATTTCCGTTTCAAAAGTTCCATGATTTCAAGAACAAAAATTATTTCCCAGTTCTAGCTTCATTTTTCAATCCGACACTTGCAACCGCATCGAGCTCAGGAGATTCAGAAACTTCGAGAAGCCTTTATTTTGCACTTTTGAAACGAATTCCATTTTATTCGTCACTTTTAATMTCATCCCCTCCGTTTTATTCTTCAAAGGGATTCGCACCGACAATAACAGAAAAAGAAAGAGTTTCTTTTTTAATTTAAAACTTTTTTTTCTTAAGCGTTAGGAGTTTTTTTGCAGGATCTTTCTCTCTTTAAATCTGAGAATTTTTCTCGGAAGTTTTGAAATTCAGGGTAGATCTTTTCTAATACTGTTTCAATCACTTTAGATTAGTTGAAAACTTTTTTGCGCTAATCATTAGAATAAATCTTTTTTTTGGTTTTAAGATAAATAGAATCACATTTCTGGTTATATATGTTACCTAATTGATGTTGACTTAATTACCTAAAATTGCACATTAATATTTCATTAGAAACAACTTCGTCCAATTATCTCTATCTTTTCTTACTTTCCGAGGAATTCTAACTTTTTTGAAGCTGACTTTGTAGCTTGTAAAATATACAGTAACTGTGTAATTCAAGGGTTACTGTAGACCAAACGGAAAAATTGGTTGTGAAAAGTACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAACAAAAATTATTTCCCAGTT</pcr_primer_p1>
		<pcr_primer_p2>AAACTCCTAACGCTTAAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAACAAAAATTATTTCCCAGTTCTAGCTTCATTTTTCAATCCGACACTTGCAACCGCATCGAGCTCAGGAGATTCAGAAACTTCGAGAAGCCTTTATTTTGCACTTTTGAAACGAATTCCATTTTATTCGTCACTTTTAATCTCATCCCCTCCGTTTTATTCTTCAAAGGGATTCGCACCGACAATAACAGAAAAAGAAAGAGTTTCTTTTTTAATTTAAAACTTTTTTTTCTTAAGCGTTAGGAGTTT</canonical_amplicon>
		<polymorphic_amplicon>AGAACAAAAATTATTTCCCAGTTCTAGCTTCATTTTTCAATCCGACACTTGCAACCGCATCGAGCTCAGGAGATTCAGAAACTTCGAGAAGCCTTTATTTTGCACTTTTGAAACGAATTCCATTTTATTCGTCACTTTTAATMTCATCCCCTCCGTTTTATTCTTCAAAGGGATTCGCACCGACAATAACAGAAAAAGAAAGAGTTTCTTTTTTAATTTAAAACTTTTTTTTCTTAAGCGTTAGGAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2306</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>55253</contig_pos>
        <strand>-</strand>
        <context>TATTATATAG[A/G/C/T]TATTTAATTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G/C/T</alleles>
        <left_flank>GCAAATCGACAAGTAACATTTGACAGAATATAATTTTTTGTATTATATAG</left_flank>
        <right_flank>TATTTAATTAGTTTGACATTTTGAATGATGATTTCTAATATAAATGAAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTTTATCCGATAGCCAAGCACCCGGTGGGCCAATGGGGCGTGGAGTTCGGAGATGATGTTGTCCCAATCTTGCCTCCAAATGCCACCGTAGACTTCAAGTCGTGGTCGGTGAGTATTTTTGAGTTTTTTAGGTTAAAGAGGCTTTGGCGGGGGATCATAACTTTGTTCAAACTTTGAATTTCTGTTTGAACTAAAAAGTGCAACATAGAACTTAAGGAGCTCTACAAAATGATATATAATGCAACTATATTTAAACACTGACTTTTGAACTAGAGACAGTAGGAGCTTTCTAGACTGATTTTAAAAATCTAGACGTTTCACGGCTTCTAGTTTAAGAATCGGCAGTTCGGTTTTTTGAATTTTTATCATTTTGTACATCTCTTCAAGTACTACATTTTAATTTTTGTTACAATCAAAAATACTAATTTTGAGCCGAGTTATTGGTCGGCAAATCGACAAGTAACATTTGACAGAATATAATTTTTTGTATTATATAGCTATTTAATTAGTTTGACATTTTGAATGATGATTTCTAATATAAATGAAACAGTTTATTTTTAAAATTTCAAACAGAAAAAAAAAAACCAAAAAACCTAGCTTTGAAAACTCTGCGACCCTAAAACACAGAGCGCTTACCAACCGTAAATACCGCAATGAGACTCACCTCACTACATGTCACATGTCAAGTCAGGTATAGTACCTAAACTTTGAGCTCAATAATCTCGGCTAATTCAAAAGATAACGGAAATTGGTCAATTAATAAAATGCTACTCATTTATGCCTGGACTTTTCCACCAGCATTTTATCAGTTGGCGGATTTTTGATATCTCTGATAGCAACCGAGATAATTGAGCTCAAAGTGAACGTATAGGATGGGTTTTTAGAGTATTATGATTAGTTTGAGTGCCTTTTAAAAAGTAGGGTACCTGAACAACCTTTTTTTAAATGATCATAACAAAACAAAGCCCTTGAGTGAGCTAACATAAGCGGTCGCAATT</canonical>
            <polymorphic>CAGTTTATCCGATAGCCAAGCACCCGGTGGGCCAATGGGGCGTGGAGTTCGGAGATGATGTTGTCCCAATCTTGCCTCCAAATGCCACCGTAGACTTCAAGTCGTGGTCGGTGAGTATTTTTGAGTTTTTTAGGTTAAAGAGGCTTTGGCGGGGGATCATAACTTTGTTCAAACTTTGAATTTCTGTTTGAACTAAAAAGTGCAACATAGAACTTAAGGAGCTCTACAAAATGATATATAATGCAACTATATTTAAACACTGACTTTTGAACTAGAGACAGTAGGAGCTTTCTAGACTGATTTTAAAAATCTAGACGTTTCACGGCTTCTAGTTTAAGAATCGGCAGTTCGGTTTTTTGAATTTTTATCATTTTGTACATCTCTTCAAGTACTACATTTTAATTTTTGTTACAATCAAAAATACTAATTTTGAGCCGAGTTATTGGTCGGCAAATCGACAAGTAACATTTGACAGAATATAATTTTTTGTATTATATAGRTATTTAATTAGTTTGACATTTTGAATGATGATTTCTAATATAAATGAAACAGTTTATTTTTAAAATTTCAAACAGAAAAAAAAAAACCAAAAAACCTAGCTTTGAAAACTCTGCGACCCTAAAACACAGAGCGCTTACCAACCGTAAATACCGCAATGAGACTCACCTCACTACATGTCACATGTCAAGTCAGGTATAGTACCTAAACTTTGAGCTCAATAATCTCGGCTAATTCAAAAGATAACGGAAATTGGTCAATTAATAAAATGCTACTCATTTATGCCTGGACTTTTCCACCAGCATTTTATCAGTTGGCGGATTTTTGATATCTCTGATAGCAACCGAGATAATTGAGCTCAAAGTGAACGTATAGGATGGGTTTTTAGAGTATTATGATTAGTTTGAGTGCCTTTTAAAAAGTAGGGTACCTGAACAACCTTTTTTTAAATGATCATAACAAAACAAAGCCCTTGAGTGAGCTAACATAAGCGGTCGCAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>221 212 141 124 115 100 66 21</canonical_bands>
                <polymorphic_bands>312 221 141 124 115 66 21</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>127 115 112 112 109 100 78 66 65 38 21 16 15 14 12</canonical_bands>
                <polymorphic_bands>165 127 115 112 112 109 78 66 38 21 16 15 14 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTAGGTTAAAGAGGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>GTTTTAGGGTCGCAGAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>499</pcr_amplicon_size>
		<canonical_amplicon>TTTTTAGGTTAAAGAGGCTTTGGCGGGGGATCATAACTTTGTTCAAACTTTGAATTTCTGTTTGAACTAAAAAGTGCAACATAGAACTTAAGGAGCTCTACAAAATGATATATAATGCAACTATATTTAAACACTGACTTTTGAACTAGAGACAGTAGGAGCTTTCTAGACTGATTTTAAAAATCTAGACGTTTCACGGCTTCTAGTTTAAGAATCGGCAGTTCGGTTTTTTGAATTTTTATCATTTTGTACATCTCTTCAAGTACTACATTTTAATTTTTGTTACAATCAAAAATACTAATTTTGAGCCGAGTTATTGGTCGGCAAATCGACAAGTAACATTTGACAGAATATAATTTTTTGTATTATATAGCTATTTAATTAGTTTGACATTTTGAATGATGATTTCTAATATAAATGAAACAGTTTATTTTTAAAATTTCAAACAGAAAAAAAAAAACCAAAAAACCTAGCTTTGAAAACTCTGCGACCCTAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTAGGTTAAAGAGGCTTTGGCGGGGGATCATAACTTTGTTCAAACTTTGAATTTCTGTTTGAACTAAAAAGTGCAACATAGAACTTAAGGAGCTCTACAAAATGATATATAATGCAACTATATTTAAACACTGACTTTTGAACTAGAGACAGTAGGAGCTTTCTAGACTGATTTTAAAAATCTAGACGTTTCACGGCTTCTAGTTTAAGAATCGGCAGTTCGGTTTTTTGAATTTTTATCATTTTGTACATCTCTTCAAGTACTACATTTTAATTTTTGTTACAATCAAAAATACTAATTTTGAGCCGAGTTATTGGTCGGCAAATCGACAAGTAACATTTGACAGAATATAATTTTTTGTATTATATAGRTATTTAATTAGTTTGACATTTTGAATGATGATTTCTAATATAAATGAAACAGTTTATTTTTAAAATTTCAAACAGAAAAAAAAAAACCAAAAAACCTAGCTTTGAAAACTCTGCGACCCTAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2307</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>64075</contig_pos>
        <strand>+</strand>
        <context>GGAAAAACAG[A/G]ATTTTTTCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACAATAATTTTTAAACAGTTATTGAACTATTTGAAACAGGAAAAACAG</left_flank>
        <right_flank>ATTTTTTCTGGTCCAACAAGTTTGAATGTTTAGTTTCTCTTTCTTGTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGTTTTTTGGCATTAGTTGTTAGTCAAAATGATCTGAGCACTTTGAGCTCAATTATCTCGATTACTATGAGAAATACCAAAAATCTGTCAACTAATAAAATTTTGATGACATTATGGTGAATTTTTTATCAGTTGACACATTTTTGATAATTTTCATAGGAACCAAGATAATTGATTTAATGTGCAAATATTTACATGGTGTTACTGAAGCATTCACGGGAAGGTCCACTTTAAGGCATTTTATTTCGGTTCCTGTAAACGATATCAAAAAGTTTTCAACTGACGAAATATTTGTGATATTTTGATAAATGTTTTGTTAGTTGATTACATTTTGATATCTTTCACAGGAAGCGAGATAAATTGAGTAGGAGTAACGGTTTAACTTTTCTAGCGATTTTGTGATTTCACAATTAGATTTTTTCATAGTATTGAATCGAATGCTACTGTGAAACAATAATTTTTAAACAGTTATTGAACTATTTGAAACAGGAAAAACAGAATTTTTTCTGGTCCAACAAGTTTGAATGTTTAGTTTCTCTTTCTTGTTTTAGTTATCTACCGAAAGGTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCAAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACT</canonical>
            <polymorphic>GTGTTTTTTGGCATTAGTTGTTAGTCAAAATGATCTGAGCACTTTGAGCTCAATTATCTCGATTACTATGAGAAATACCAAAAATCTGTCAACTAATAAAATTTTGATGACATTATGGTGAATTTTTTATCAGTTGACACATTTTTGATAATTTTCATAGGAACCAAGATAATTGATTTAATGTGCAAATATTTACATGGTGTTACTGAAGCATTCACGGGAAGGTCCACTTTAAGGCATTTTATTTCGGTTCCTGTAAACGATATCAAAAAGTTTTCAACTGACGAAATATTTGTGATATTTTGATAAATGTTTTGTTAGTTGATTACATTTTGATATCTTTCACAGGAAGCGAGATAAATTGAGTAGGAGTAACGGTTTAACTTTTCTAGCGATTTTGTGATTTCACAATTAGATTTTTTCATAGTATTGAATCGAATGCTACTGTGAAACAATAATTTTTAAACAGTTATTGAACTATTTGAAACAGGAAAAACAGRATTTTTTCTGGTCCAACAAGTTTGAATGTTTAGTTTCTCTTTCTTGTTTTAGTTATCTACCGAAAGGTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCAAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>379 277 137 99 87 21</canonical_bands>
                <polymorphic_bands>656 137 99 87 21</polymorphic_bands>
            </assay>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>189 114 102 87 76 51 50 48 47 47 43 40 35 29 21 21</canonical_bands>
                <polymorphic_bands>189 119 114 102 87 51 50 48 47 47 40 35 29 21 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTAACTTTTCTAGCGATTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTTCTGAAATGAAAAACAGATT</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>GGTTTAACTTTTCTAGCGATTTTGTGATTTCACAATTAGATTTTTTCATAGTATTGAATCGAATGCTACTGTGAAACAATAATTTTTAAACAGTTATTGAACTATTTGAAACAGGAAAAACAGAATTTTTTCTGGTCCAACAAGTTTGAATGTTTAGTTTCTCTTTCTTGTTTTAGTTATCTACCGAAAGGTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAG</canonical_amplicon>
		<polymorphic_amplicon>GGTTTAACTTTTCTAGCGATTTTGTGATTTCACAATTAGATTTTTTCATAGTATTGAATCGAATGCTACTGTGAAACAATAATTTTTAAACAGTTATTGAACTATTTGAAACAGGAAAAACAGRATTTTTTCTGGTCCAACAAGTTTGAATGTTTAGTTTCTCTTTCTTGTTTTAGTTATCTACCGAAAGGTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2308</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>64219</contig_pos>
        <strand>+</strand>
        <context>CTTGTCTTTT[A/C]CGAGGAATCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTT</left_flank>
        <right_flank>CGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGATAATTTTCATAGGAACCAAGATAATTGATTTAATGTGCAAATATTTACATGGTGTTACTGAAGCATTCACGGGAAGGTCCACTTTAAGGCATTTTATTTCGGTTCCTGTAAACGATATCAAAAAGTTTTCAACTGACGAAATATTTGTGATATTTTGATAAATGTTTTGTTAGTTGATTACATTTTGATATCTTTCACAGGAAGCGAGATAAATTGAGTAGGAGTAACGGTTTAACTTTTCTAGCGATTTTGTGATTTCACAATTAGATTTTTTCATAGTATTGAATCGAATGCTACTGTGAAACAATAATTTTTAAACAGTTATTGAACTATTTGAAACAGGAAAAACAGAATTTTTTCTGGTCCAACAAGTTTGAATGTTTAGTTTCTCTTTCTTGTTTTAGTTATCTACCGAAAGGTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCAAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTTCAAACTGGAAAGTCACCATGGAGGAACCCAACGATTTTCTTCGTCGAATTTTGGATAATCTTTACCAGAAAGCCACTGTAGCACCCAATAATGATGATG</canonical>
            <polymorphic>TTGATAATTTTCATAGGAACCAAGATAATTGATTTAATGTGCAAATATTTACATGGTGTTACTGAAGCATTCACGGGAAGGTCCACTTTAAGGCATTTTATTTCGGTTCCTGTAAACGATATCAAAAAGTTTTCAACTGACGAAATATTTGTGATATTTTGATAAATGTTTTGTTAGTTGATTACATTTTGATATCTTTCACAGGAAGCGAGATAAATTGAGTAGGAGTAACGGTTTAACTTTTCTAGCGATTTTGTGATTTCACAATTAGATTTTTTCATAGTATTGAATCGAATGCTACTGTGAAACAATAATTTTTAAACAGTTATTGAACTATTTGAAACAGGAAAAACAGAATTTTTTCTGGTCCAACAAGTTTGAATGTTTAGTTTCTCTTTCTTGTTTTAGTTATCTACCGAAAGGTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTMCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCAAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTTCAAACTGGAAAGTCACCATGGAGGAACCCAACGATTTTCTTCGTCGAATTTTGGATAATCTTTACCAGAAAGCCACTGTAGCACCCAATAATGATGATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>479 417 83 21</canonical_bands>
                <polymorphic_bands>479 438 83</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>461 288 126 45 40 31 9</canonical_bands>
                <polymorphic_bands>461 288 126 49 45 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCCAAAATTATTCATCAAA</pcr_primer_p1>
		<pcr_primer_p2>AATCAGAAGAGACGGTTATACCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCAAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTMCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCAAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2309</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>64256</contig_pos>
        <strand></strand>
        <context>GATCTGCTGT[T/C]CTCAGATTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCTCTTGTCTTTTCCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGT</left_flank>
        <right_flank>CTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGCAAATATTTACATGGTGTTACTGAAGCATTCACGGGAAGGTCCACTTTAAGGCATTTTATTTCGGTTCCTGTAAACGATATCAAAAAGTTTTCAACTGACGAAATATTTGTGATATTTTGATAAATGTTTTGTTAGTTGATTACATTTTGATATCTTTCACAGGAAGCGAGATAAATTGAGTAGGAGTAACGGTTTAACTTTTCTAGCGATTTTGTGATTTCACAATTAGATTTTTTCATAGTATTGAATCGAATGCTACTGTGAAACAATAATTTTTAAACAGTTATTGAACTATTTGAAACAGGAAAAACAGAATTTTTTCTGGTCCAACAAGTTTGAATGTTTAGTTTCTCTTTCTTGTTTTAGTTATCTACCGAAAGGTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCAAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTTCAAACTGGAAAGTCACCATGGAGGAACCCAACGATTTTCTTCGTCGAATTTTGGATAATCTTTACCAGAAAGCCACTGTAGCACCCAATAATGATGATGAACACGGAGCGATAGGTAGGTACCAAGTATTTAGAAA</canonical>
            <polymorphic>TGTGCAAATATTTACATGGTGTTACTGAAGCATTCACGGGAAGGTCCACTTTAAGGCATTTTATTTCGGTTCCTGTAAACGATATCAAAAAGTTTTCAACTGACGAAATATTTGTGATATTTTGATAAATGTTTTGTTAGTTGATTACATTTTGATATCTTTCACAGGAAGCGAGATAAATTGAGTAGGAGTAACGGTTTAACTTTTCTAGCGATTTTGTGATTTCACAATTAGATTTTTTCATAGTATTGAATCGAATGCTACTGTGAAACAATAATTTTTAAACAGTTATTGAACTATTTGAAACAGGAAAAACAGAATTTTTTCTGGTCCAACAAGTTTGAATGTTTAGTTTCTCTTTCTTGTTTTAGTTATCTACCGAAAGGTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTYCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCAAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTTCAAACTGGAAAGTCACCATGGAGGAACCCAACGATTTTCTTCGTCGAATTTTGGATAATCTTTACCAGAAAGCCACTGTAGCACCCAATAATGATGATGAACACGGAGCGATAGGTAGGTACCAAGTATTTAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCCAAAATTATTCATCAAA</pcr_primer_p1>
		<pcr_primer_p2>AATCAGAAGAGACGGTTATACCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCAAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTYCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCAAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2310</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>64327</contig_pos>
        <strand>+</strand>
        <context>TCACGCCTTC[A/T]AAGTGAAGCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTC</left_flank>
        <right_flank>AAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGTAAACGATATCAAAAAGTTTTCAACTGACGAAATATTTGTGATATTTTGATAAATGTTTTGTTAGTTGATTACATTTTGATATCTTTCACAGGAAGCGAGATAAATTGAGTAGGAGTAACGGTTTAACTTTTCTAGCGATTTTGTGATTTCACAATTAGATTTTTTCATAGTATTGAATCGAATGCTACTGTGAAACAATAATTTTTAAACAGTTATTGAACTATTTGAAACAGGAAAAACAGAATTTTTTCTGGTCCAACAAGTTTGAATGTTTAGTTTCTCTTTCTTGTTTTAGTTATCTACCGAAAGGTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCAAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTTCAAACTGGAAAGTCACCATGGAGGAACCCAACGATTTTCTTCGTCGAATTTTGGATAATCTTTACCAGAAAGCCACTGTAGCACCCAATAATGATGATGAACACGGAGCGATAGGTAGGTACCAAGTATTTAGAAACCGTTAATTTTATAAGGACCTTACAAATTAGGGGTTCCAAAAAATTTAGAGGAACACAAAGAGACCCTTAA</canonical>
            <polymorphic>CCTGTAAACGATATCAAAAAGTTTTCAACTGACGAAATATTTGTGATATTTTGATAAATGTTTTGTTAGTTGATTACATTTTGATATCTTTCACAGGAAGCGAGATAAATTGAGTAGGAGTAACGGTTTAACTTTTCTAGCGATTTTGTGATTTCACAATTAGATTTTTTCATAGTATTGAATCGAATGCTACTGTGAAACAATAATTTTTAAACAGTTATTGAACTATTTGAAACAGGAAAAACAGAATTTTTTCTGGTCCAACAAGTTTGAATGTTTAGTTTCTCTTTCTTGTTTTAGTTATCTACCGAAAGGTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCWAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTTCAAACTGGAAAGTCACCATGGAGGAACCCAACGATTTTCTTCGTCGAATTTTGGATAATCTTTACCAGAAAGCCACTGTAGCACCCAATAATGATGATGAACACGGAGCGATAGGTAGGTACCAAGTATTTAGAAACCGTTAATTTTATAAGGACCTTACAAATTAGGGGTTCCAAAAAATTTAGAGGAACACAAAGAGACCCTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCCAAAATTATTCATCAAA</pcr_primer_p1>
		<pcr_primer_p2>AATCAGAAGAGACGGTTATACCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCAAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCWAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2311</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>64423</contig_pos>
        <strand>+</strand>
        <context>CGAGYAAAAM[A/T]AGTTATCGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAA</left_flank>
        <right_flank>AGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGCGAGATAAATTGAGTAGGAGTAACGGTTTAACTTTTCTAGCGATTTTGTGATTTCACAATTAGATTTTTTCATAGTATTGAATCGAATGCTACTGTGAAACAATAATTTTTAAACAGTTATTGAACTATTTGAAACAGGAAAAACAGAATTTTTTCTGGTCCAACAAGTTTGAATGTTTAGTTTCTCTTTCTTGTTTTAGTTATCTACCGAAAGGTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCAAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTTCAAACTGGAAAGTCACCATGGAGGAACCCAACGATTTTCTTCGTCGAATTTTGGATAATCTTTACCAGAAAGCCACTGTAGCACCCAATAATGATGATGAACACGGAGCGATAGGTAGGTACCAAGTATTTAGAAACCGTTAATTTTATAAGGACCTTACAAATTAGGGGTTCCAAAAAATTTAGAGGAACACAAAGAGACCCTTAAAGCAACTTATGGGATGTGGAAAATATGAACCTTGGCCATTTTTCAATTTTTGTACCTCATTTTTTTGTTCCCTTTTTTGACCGGGTTCTTCTAAAT</canonical>
            <polymorphic>GAAGCGAGATAAATTGAGTAGGAGTAACGGTTTAACTTTTCTAGCGATTTTGTGATTTCACAATTAGATTTTTTCATAGTATTGAATCGAATGCTACTGTGAAACAATAATTTTTAAACAGTTATTGAACTATTTGAAACAGGAAAAACAGAATTTTTTCTGGTCCAACAAGTTTGAATGTTTAGTTTCTCTTTCTTGTTTTAGTTATCTACCGAAAGGTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCAAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAWAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTTCAAACTGGAAAGTCACCATGGAGGAACCCAACGATTTTCTTCGTCGAATTTTGGATAATCTTTACCAGAAAGCCACTGTAGCACCCAATAATGATGATGAACACGGAGCGATAGGTAGGTACCAAGTATTTAGAAACCGTTAATTTTATAAGGACCTTACAAATTAGGGGTTCCAAAAAATTTAGAGGAACACAAAGAGACCCTTAAAGCAACTTATGGGATGTGGAAAATATGAACCTTGGCCATTTTTCAATTTTTGTACCTCATTTTTTTGTTCCCTTTTTTGACCGGGTTCTTCTAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATAACCGTCTCTTCTGATTTGA</pcr_primer_p1>
		<pcr_primer_p2>AACTAACCCCACAGAATATAAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTT</canonical_amplicon>
		<polymorphic_amplicon>TATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAWAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2313</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>64446</contig_pos>
        <strand></strand>
        <context>TATTCGATTT[G/C]YTCTAATAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTT</left_flank>
        <right_flank>TTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAACGGTTTAACTTTTCTAGCGATTTTGTGATTTCACAATTAGATTTTTTCATAGTATTGAATCGAATGCTACTGTGAAACAATAATTTTTAAACAGTTATTGAACTATTTGAAACAGGAAAAACAGAATTTTTTCTGGTCCAACAAGTTTGAATGTTTAGTTTCTCTTTCTTGTTTTAGTTATCTACCGAAAGGTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCAAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTTCAAACTGGAAAGTCACCATGGAGGAACCCAACGATTTTCTTCGTCGAATTTTGGATAATCTTTACCAGAAAGCCACTGTAGCACCCAATAATGATGATGAACACGGAGCGATAGGTAGGTACCAAGTATTTAGAAACCGTTAATTTTATAAGGACCTTACAAATTAGGGGTTCCAAAAAATTTAGAGGAACACAAAGAGACCCTTAAAGCAACTTATGGGATGTGGAAAATATGAACCTTGGCCATTTTTCAATTTTTGTACCTCATTTTTTTGTTCCCTTTTTTGACCGGGTTCTTCTAAATCCCCTTACTTTAGTGGACCCTAG</canonical>
            <polymorphic>GTAACGGTTTAACTTTTCTAGCGATTTTGTGATTTCACAATTAGATTTTTTCATAGTATTGAATCGAATGCTACTGTGAAACAATAATTTTTAAACAGTTATTGAACTATTTGAAACAGGAAAAACAGAATTTTTTCTGGTCCAACAAGTTTGAATGTTTAGTTTCTCTTTCTTGTTTTAGTTATCTACCGAAAGGTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCAAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTSTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTTCAAACTGGAAAGTCACCATGGAGGAACCCAACGATTTTCTTCGTCGAATTTTGGATAATCTTTACCAGAAAGCCACTGTAGCACCCAATAATGATGATGAACACGGAGCGATAGGTAGGTACCAAGTATTTAGAAACCGTTAATTTTATAAGGACCTTACAAATTAGGGGTTCCAAAAAATTTAGAGGAACACAAAGAGACCCTTAAAGCAACTTATGGGATGTGGAAAATATGAACCTTGGCCATTTTTCAATTTTTGTACCTCATTTTTTTGTTCCCTTTTTTGACCGGGTTCTTCTAAATCCCCTTACTTTAGTGGACCCTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATAACCGTCTCTTCTGATTTGA</pcr_primer_p1>
		<pcr_primer_p2>AACTAACCCCACAGAATATAAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTT</canonical_amplicon>
		<polymorphic_amplicon>TATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTSTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2314</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>64447</contig_pos>
        <strand></strand>
        <context>ATTCGATTTS[T/C]TCTAATAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTG</left_flank>
        <right_flank>TCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACGGTTTAACTTTTCTAGCGATTTTGTGATTTCACAATTAGATTTTTTCATAGTATTGAATCGAATGCTACTGTGAAACAATAATTTTTAAACAGTTATTGAACTATTTGAAACAGGAAAAACAGAATTTTTTCTGGTCCAACAAGTTTGAATGTTTAGTTTCTCTTTCTTGTTTTAGTTATCTACCGAAAGGTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCAAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTTCAAACTGGAAAGTCACCATGGAGGAACCCAACGATTTTCTTCGTCGAATTTTGGATAATCTTTACCAGAAAGCCACTGTAGCACCCAATAATGATGATGAACACGGAGCGATAGGTAGGTACCAAGTATTTAGAAACCGTTAATTTTATAAGGACCTTACAAATTAGGGGTTCCAAAAAATTTAGAGGAACACAAAGAGACCCTTAAAGCAACTTATGGGATGTGGAAAATATGAACCTTGGCCATTTTTCAATTTTTGTACCTCATTTTTTTGTTCCCTTTTTTGACCGGGTTCTTCTAAATCCCCTTACTTTAGTGGACCCTAGA</canonical>
            <polymorphic>TAACGGTTTAACTTTTCTAGCGATTTTGTGATTTCACAATTAGATTTTTTCATAGTATTGAATCGAATGCTACTGTGAAACAATAATTTTTAAACAGTTATTGAACTATTTGAAACAGGAAAAACAGAATTTTTTCTGGTCCAACAAGTTTGAATGTTTAGTTTCTCTTTCTTGTTTTAGTTATCTACCGAAAGGTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCAAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTGYTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTTCAAACTGGAAAGTCACCATGGAGGAACCCAACGATTTTCTTCGTCGAATTTTGGATAATCTTTACCAGAAAGCCACTGTAGCACCCAATAATGATGATGAACACGGAGCGATAGGTAGGTACCAAGTATTTAGAAACCGTTAATTTTATAAGGACCTTACAAATTAGGGGTTCCAAAAAATTTAGAGGAACACAAAGAGACCCTTAAAGCAACTTATGGGATGTGGAAAATATGAACCTTGGCCATTTTTCAATTTTTGTACCTCATTTTTTTGTTCCCTTTTTTGACCGGGTTCTTCTAAATCCCCTTACTTTAGTGGACCCTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATAACCGTCTCTTCTGATTTGA</pcr_primer_p1>
		<pcr_primer_p2>AACTAACCCCACAGAATATAAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTT</canonical_amplicon>
		<polymorphic_amplicon>TATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTGYTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2315</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>64557</contig_pos>
        <strand>+</strand>
        <context>TCTATGATTT[G/T]TGATTCTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTT</left_flank>
        <right_flank>TGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTC</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAACAGGAAAAACAGAATTTTTTCTGGTCCAACAAGTTTGAATGTTTAGTTTCTCTTTCTTGTTTTAGTTATCTACCGAAAGGTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCAAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTTCAAACTGGAAAGTCACCATGGAGGAACCCAACGATTTTCTTCGTCGAATTTTGGATAATCTTTACCAGAAAGCCACTGTAGCACCCAATAATGATGATGAACACGGAGCGATAGGTAGGTACCAAGTATTTAGAAACCGTTAATTTTATAAGGACCTTACAAATTAGGGGTTCCAAAAAATTTAGAGGAACACAAAGAGACCCTTAAAGCAACTTATGGGATGTGGAAAATATGAACCTTGGCCATTTTTCAATTTTTGTACCTCATTTTTTTGTTCCCTTTTTTGACCGGGTTCTTCTAAATCCCCTTACTTTAGTGGACCCTAGAGATCGTTAATATAAAATACAAAAAAAGTTGTGTCAAAATAAAGATTAATATGACCAGGGCTGTCGGAAACAGAGCCACGGATTTTCCCTTACGGCCTTTACGTCCGCCTA</canonical>
            <polymorphic>TGAAACAGGAAAAACAGAATTTTTTCTGGTCCAACAAGTTTGAATGTTTAGTTTCTCTTTCTTGTTTTAGTTATCTACCGAAAGGTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCAAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTKTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTTCAAACTGGAAAGTCACCATGGAGGAACCCAACGATTTTCTTCGTCGAATTTTGGATAATCTTTACCAGAAAGCCACTGTAGCACCCAATAATGATGATGAACACGGAGCGATAGGTAGGTACCAAGTATTTAGAAACCGTTAATTTTATAAGGACCTTACAAATTAGGGGTTCCAAAAAATTTAGAGGAACACAAAGAGACCCTTAAAGCAACTTATGGGATGTGGAAAATATGAACCTTGGCCATTTTTCAATTTTTGTACCTCATTTTTTTGTTCCCTTTTTTGACCGGGTTCTTCTAAATCCCCTTACTTTAGTGGACCCTAGAGATCGTTAATATAAAATACAAAAAAAGTTGTGTCAAAATAAAGATTAATATGACCAGGGCTGTCGGAAACAGAGCCACGGATTTTCCCTTACGGCCTTTACGTCCGCCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>223 151 93 89 60 57 45 41 38 33 33 25 24 20 17 14 13 8 7 5 2 2</canonical_bands>
                <polymorphic_bands>223 165 93 89 60 57 45 41 38 33 33 25 24 20 17 13 8 7 5 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATAACCGTCTCTTCTGATTTGA</pcr_primer_p1>
		<pcr_primer_p2>AACTAACCCCACAGAATATAAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTT</canonical_amplicon>
		<polymorphic_amplicon>TATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTKTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2316</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>65968</contig_pos>
        <strand>+</strand>
        <context>TAGCTCTGTG[A/G]CACgacacct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATAAGAATCACATCACCGTCCACCAGGTTCTCGACCGTGTAGCTCTGTG</left_flank>
        <right_flank>CACGACACCTTTATACTCATAATTTGAGCTCAATTATCTCGGCCTCAGTA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCCGTTGGGTCGATTGAATTTTGAGTTTGGAGAGGTTTCTCTGCCAGTTTTGCCACCAAATAAGACATCTGATTTCAAATTATGGTCGGTGAGTGTTTCGGTTTCGCTTCTGGGCTTACAACTAGTTGGGGCGTAACTTAATGTCATTTTCCTCTCGGTTCTTGTAACAGATGCCAAAAATAACCAACAGATGAAATGTTTTTGATATTATGATAAACATTTTATCAGTTGACCCCTTTTTGATATCGTGTACAGGAAATGAGTTATATGAGCTCGAAGTTGATATGCCGCGCTGCTAGCTACACAGTCCAGAAACTTTTATTTCCCGACAAATACAATGAGGTTTGTTGAAATGGTAATTTTTTCTGTTTCTTTAAAATCGGAAGTTTTGAGTCTGTTTTCAAAATTGCTAGTCTTATGATAACATGGCTTTTGAACATATTTGGGTATAAGAATCACATCACCGTCCACCAGGTTCTCGACCGTGTAGCTCTGTGACACGACACCTTTATACTCATAATTTGAGCTCAATTATCTCGGCCTCAGTAAGAGGTATCAAAACTCTGTCAACTTCAAAAATGTTGGTGATACTATGATAAACATTTTTGTAGTTACCAACTTTTCGATATCTTTTACAGAAGTCGAGATGATTGAGCTTAAACTGCGGGGATATGTGATGATCCAATTAACGAGATTATATTATTATTTAAGTTGCTACAAAAAAAAAATACATATACATATACAGGTTTTAATACATATACAGGTTTCATATACAGGTTTATATACAGGTTTTAAAACGTTCATATTTTCATAATTAACCTATTTATCCACTTTTTCCATGTTGGTGTCACAAATTATAAAAAAGTGAATACTGGTTCAATTCCTACGTTTTCAGCCAATCGACTTCATTCAGTGGGTATACCAAGTCATACGCCCACATGTGGTTGAATCAGTTATGACTCAAATTGCTGAATTTCAATTTGACGGATCAGTAGTCA</canonical>
            <polymorphic>CATCCGTTGGGTCGATTGAATTTTGAGTTTGGAGAGGTTTCTCTGCCAGTTTTGCCACCAAATAAGACATCTGATTTCAAATTATGGTCGGTGAGTGTTTCGGTTTCGCTTCTGGGCTTACAACTAGTTGGGGCGTAACTTAATGTCATTTTCCTCTCGGTTCTTGTAACAGATGCCAAAAATAACCAACAGATGAAATGTTTTTGATATTATGATAAACATTTTATCAGTTGACCCCTTTTTGATATCGTGTACAGGAAATGAGTTATATGAGCTCGAAGTTGATATGCCGCGCTGCTAGCTACACAGTCCAGAAACTTTTATTTCCCGACAAATACAATGAGGTTTGTTGAAATGGTAATTTTTTCTGTTTCTTTAAAATCGGAAGTTTTGAGTCTGTTTTCAAAATTGCTAGTCTTATGATAACATGGCTTTTGAACATATTTGGGTATAAGAATCACATCACCGTCCACCAGGTTCTCGACCGTGTAGCTCTGTGRCACGACACCTTTATACTCATAATTTGAGCTCAATTATCTCGGCCTCAGTAAGAGGTATCAAAACTCTGTCAACTTCAAAAATGTTGGTGATACTATGATAAACATTTTTGTAGTTACCAACTTTTCGATATCTTTTACAGAAGTCGAGATGATTGAGCTTAAACTGCGGGGATATGTGATGATCCAATTAACGAGATTATATTATTATTTAAGTTGCTACAAAAAAAAAATACATATACATATACAGGTTTTAATACATATACAGGTTTCATATACAGGTTTATATACAGGTTTTAAAACGTTCATATTTTCATAATTAACCTATTTATCCACTTTTTCCATGTTGGTGTCACAAATTATAAAAAAGTGAATACTGGTTCAATTCCTACGTTTTCAGCCAATCGACTTCATTCAGTGGGTATACCAAGTCATACGCCCACATGTGGTTGAATCAGTTATGACTCAAATTGCTGAATTTCAATTTGACGGATCAGTAGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>331 236 152 134 116 31</canonical_bands>
                <polymorphic_bands>447 236 152 134 31</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>496 352 152</canonical_bands>
                <polymorphic_bands>848 152</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGGGTATAAGAATCACATCAC</pcr_primer_p1>
		<pcr_primer_p2>ATCTCGTTAATTGGATCATCAC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTTGGGTATAAGAATCACATCACCGTCCACCAGGTTCTCGACCGTGTAGCTCTGTGACACGACACCTTTATACTCATAATTTGAGCTCAATTATCTCGGCCTCAGTAAGAGGTATCAAAACTCTGTCAACTTCAAAAATGTTGGTGATACTATGATAAACATTTTTGTAGTTACCAACTTTTCGATATCTTTTACAGAAGTCGAGATGATTGAGCTTAAACTGCGGGGATATGTGATGATCCAATTAACGAGAT</canonical_amplicon>
		<polymorphic_amplicon>TTTGGGTATAAGAATCACATCACCGTCCACCAGGTTCTCGACCGTGTAGCTCTGTGRCACGACACCTTTATACTCATAATTTGAGCTCAATTATCTCGGCCTCAGTAAGAGGTATCAAAACTCTGTCAACTTCAAAAATGTTGGTGATACTATGATAAACATTTTTGTAGTTACCAACTTTTCGATATCTTTTACAGAAGTCGAGATGATTGAGCTTAAACTGCGGGGATATGTGATGATCCAATTAACGAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2317</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>65903</contig_pos>
        <strand>+</strand>
        <context>AACATGGCTT[C/T]TGAACATATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAGTTTTGAGTCTGTTTTCAAAATTGCTAGTCTTATGATAACATGGCTT</left_flank>
        <right_flank>TGAACATATTTGGGTATAAGAATCACATCACCGTCCACCAGGTTCTCGAC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGTTTCAGTGAGAGACAACCGGATGAACCTGAAGTTCGGGTGCCAATTCCACCGGAAACGCCTCATCCGTTGGGTCGATTGAATTTTGAGTTTGGAGAGGTTTCTCTGCCAGTTTTGCCACCAAATAAGACATCTGATTTCAAATTATGGTCGGTGAGTGTTTCGGTTTCGCTTCTGGGCTTACAACTAGTTGGGGCGTAACTTAATGTCATTTTCCTCTCGGTTCTTGTAACAGATGCCAAAAATAACCAACAGATGAAATGTTTTTGATATTATGATAAACATTTTATCAGTTGACCCCTTTTTGATATCGTGTACAGGAAATGAGTTATATGAGCTCGAAGTTGATATGCCGCGCTGCTAGCTACACAGTCCAGAAACTTTTATTTCCCGACAAATACAATGAGGTTTGTTGAAATGGTAATTTTTTCTGTTTCTTTAAAATCGGAAGTTTTGAGTCTGTTTTCAAAATTGCTAGTCTTATGATAACATGGCTTTTGAACATATTTGGGTATAAGAATCACATCACCGTCCACCAGGTTCTCGACCGTGTAGCTCTGTGACACGACACCTTTATACTCATAATTTGAGCTCAATTATCTCGGCCTCAGTAAGAGGTATCAAAACTCTGTCAACTTCAAAAATGTTGGTGATACTATGATAAACATTTTTGTAGTTACCAACTTTTCGATATCTTTTACAGAAGTCGAGATGATTGAGCTTAAACTGCGGGGATATGTGATGATCCAATTAACGAGATTATATTATTATTTAAGTTGCTACAAAAAAAAAATACATATACATATACAGGTTTTAATACATATACAGGTTTCATATACAGGTTTATATACAGGTTTTAAAACGTTCATATTTTCATAATTAACCTATTTATCCACTTTTTCCATGTTGGTGTCACAAATTATAAAAAAGTGAATACTGGTTCAATTCCTACGTTTTCAGCCAATCGACTTCATTCAGTGGGTATACCAAGTCATACG</canonical>
            <polymorphic>TAGGTTTCAGTGAGAGACAACCGGATGAACCTGAAGTTCGGGTGCCAATTCCACCGGAAACGCCTCATCCGTTGGGTCGATTGAATTTTGAGTTTGGAGAGGTTTCTCTGCCAGTTTTGCCACCAAATAAGACATCTGATTTCAAATTATGGTCGGTGAGTGTTTCGGTTTCGCTTCTGGGCTTACAACTAGTTGGGGCGTAACTTAATGTCATTTTCCTCTCGGTTCTTGTAACAGATGCCAAAAATAACCAACAGATGAAATGTTTTTGATATTATGATAAACATTTTATCAGTTGACCCCTTTTTGATATCGTGTACAGGAAATGAGTTATATGAGCTCGAAGTTGATATGCCGCGCTGCTAGCTACACAGTCCAGAAACTTTTATTTCCCGACAAATACAATGAGGTTTGTTGAAATGGTAATTTTTTCTGTTTCTTTAAAATCGGAAGTTTTGAGTCTGTTTTCAAAATTGCTAGTCTTATGATAACATGGCTTYTGAACATATTTGGGTATAAGAATCACATCACCGTCCACCAGGTTCTCGACCGTGTAGCTCTGTGACACGACACCTTTATACTCATAATTTGAGCTCAATTATCTCGGCCTCAGTAAGAGGTATCAAAACTCTGTCAACTTCAAAAATGTTGGTGATACTATGATAAACATTTTTGTAGTTACCAACTTTTCGATATCTTTTACAGAAGTCGAGATGATTGAGCTTAAACTGCGGGGATATGTGATGATCCAATTAACGAGATTATATTATTATTTAAGTTGCTACAAAAAAAAAATACATATACATATACAGGTTTTAATACATATACAGGTTTCATATACAGGTTTATATACAGGTTTTAAAACGTTCATATTTTCATAATTAACCTATTTATCCACTTTTTCCATGTTGGTGTCACAAATTATAAAAAAGTGAATACTGGTTCAATTCCTACGTTTTCAGCCAATCGACTTCATTCAGTGGGTATACCAAGTCATACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAGTTTTGAGTCTGTTTTCA</pcr_primer_p1>
		<pcr_primer_p2>ATCTCGTTAATTGGATCATCAC</pcr_primer_p2>
		<pcr_amplicon_size>314</pcr_amplicon_size>
		<canonical_amplicon>GGAAGTTTTGAGTCTGTTTTCAAAATTGCTAGTCTTATGATAACATGGCTTTTGAACATATTTGGGTATAAGAATCACATCACCGTCCACCAGGTTCTCGACCGTGTAGCTCTGTGACACGACACCTTTATACTCATAATTTGAGCTCAATTATCTCGGCCTCAGTAAGAGGTATCAAAACTCTGTCAACTTCAAAAATGTTGGTGATACTATGATAAACATTTTTGTAGTTACCAACTTTTCGATATCTTTTACAGAAGTCGAGATGATTGAGCTTAAACTGCGGGGATATGTGATGATCCAATTAACGAGAT</canonical_amplicon>
		<polymorphic_amplicon>GGAAGTTTTGAGTCTGTTTTCAAAATTGCTAGTCTTATGATAACATGGCTTYTGAACATATTTGGGTATAAGAATCACATCACCGTCCACCAGGTTCTCGACCGTGTAGCTCTGTGACACGACACCTTTATACTCATAATTTGAGCTCAATTATCTCGGCCTCAGTAAGAGGTATCAAAACTCTGTCAACTTCAAAAATGTTGGTGATACTATGATAAACATTTTTGTAGTTACCAACTTTTCGATATCTTTTACAGAAGTCGAGATGATTGAGCTTAAACTGCGGGGATATGTGATGATCCAATTAACGAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2318</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>65758</contig_pos>
        <strand>+</strand>
        <context>agttgaTATG[A/C]CGCGCTGCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTGATATCGTGTACAGGAAATGAGTTATATGAGCTCGAAGTTGATATG</left_flank>
        <right_flank>CGCGCTGCTAGCTACACAGTCCAGAAACTTTTATTTCCCGACAAATACAA</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCCGACATAACGCACCTGAAAACAACAATCTTGAGGAGCGCCGACGTGCCAAATTAAGACAGAAAAATATAGAATCAATGGAACGACTATTGGCTCAAATGCGTTCGCGACGAATAGAAGAGCAGCGTCAATTTGAAAGGAGAATAGGTTTCAGTGAGAGACAACCGGATGAACCTGAAGTTCGGGTGCCAATTCCACCGGAAACGCCTCATCCGTTGGGTCGATTGAATTTTGAGTTTGGAGAGGTTTCTCTGCCAGTTTTGCCACCAAATAAGACATCTGATTTCAAATTATGGTCGGTGAGTGTTTCGGTTTCGCTTCTGGGCTTACAACTAGTTGGGGCGTAACTTAATGTCATTTTCCTCTCGGTTCTTGTAACAGATGCCAAAAATAACCAACAGATGAAATGTTTTTGATATTATGATAAACATTTTATCAGTTGACCCCTTTTTGATATCGTGTACAGGAAATGAGTTATATGAGCTCGAAGTTGATATGCCGCGCTGCTAGCTACACAGTCCAGAAACTTTTATTTCCCGACAAATACAATGAGGTTTGTTGAAATGGTAATTTTTTCTGTTTCTTTAAAATCGGAAGTTTTGAGTCTGTTTTCAAAATTGCTAGTCTTATGATAACATGGCTTTTGAACATATTTGGGTATAAGAATCACATCACCGTCCACCAGGTTCTCGACCGTGTAGCTCTGTGACACGACACCTTTATACTCATAATTTGAGCTCAATTATCTCGGCCTCAGTAAGAGGTATCAAAACTCTGTCAACTTCAAAAATGTTGGTGATACTATGATAAACATTTTTGTAGTTACCAACTTTTCGATATCTTTTACAGAAGTCGAGATGATTGAGCTTAAACTGCGGGGATATGTGATGATCCAATTAACGAGATTATATTATTATTTAAGTTGCTACAAAAAAAAAATACATATACATATACAGGTTTTAATACATATACAGGTTTCATATACAGGTTTATATACAG</canonical>
            <polymorphic>GCCCGACATAACGCACCTGAAAACAACAATCTTGAGGAGCGCCGACGTGCCAAATTAAGACAGAAAAATATAGAATCAATGGAACGACTATTGGCTCAAATGCGTTCGCGACGAATAGAAGAGCAGCGTCAATTTGAAAGGAGAATAGGTTTCAGTGAGAGACAACCGGATGAACCTGAAGTTCGGGTGCCAATTCCACCGGAAACGCCTCATCCGTTGGGTCGATTGAATTTTGAGTTTGGAGAGGTTTCTCTGCCAGTTTTGCCACCAAATAAGACATCTGATTTCAAATTATGGTCGGTGAGTGTTTCGGTTTCGCTTCTGGGCTTACAACTAGTTGGGGCGTAACTTAATGTCATTTTCCTCTCGGTTCTTGTAACAGATGCCAAAAATAACCAACAGATGAAATGTTTTTGATATTATGATAAACATTTTATCAGTTGACCCCTTTTTGATATCGTGTACAGGAAATGAGTTATATGAGCTCGAAGTTGATATGMCGCGCTGCTAGCTACACAGTCCAGAAACTTTTATTTCCCGACAAATACAATGAGGTTTGTTGAAATGGTAATTTTTTCTGTTTCTTTAAAATCGGAAGTTTTGAGTCTGTTTTCAAAATTGCTAGTCTTATGATAACATGGCTTTTGAACATATTTGGGTATAAGAATCACATCACCGTCCACCAGGTTCTCGACCGTGTAGCTCTGTGACACGACACCTTTATACTCATAATTTGAGCTCAATTATCTCGGCCTCAGTAAGAGGTATCAAAACTCTGTCAACTTCAAAAATGTTGGTGATACTATGATAAACATTTTTGTAGTTACCAACTTTTCGATATCTTTTACAGAAGTCGAGATGATTGAGCTTAAACTGCGGGGATATGTGATGATCCAATTAACGAGATTATATTATTATTTAAGTTGCTACAAAAAAAAAATACATATACATATACAGGTTTTAATACATATACAGGTTTCATATACAGGTTTATATACAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>493 376 126 5</canonical_bands>
                <polymorphic_bands>493 381 126</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTAGTTGGGGCGTAACTTAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAATTACCATTTCAACAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ACTAGTTGGGGCGTAACTTAATGTCATTTTCCTCTCGGTTCTTGTAACAGATGCCAAAAATAACCAACAGATGAAATGTTTTTGATATTATGATAAACATTTTATCAGTTGACCCCTTTTTGATATCGTGTACAGGAAATGAGTTATATGAGCTCGAAGTTGATATGCCGCGCTGCTAGCTACACAGTCCAGAAACTTTTATTTCCCGACAAATACAATGAGGTTTGTTGAAATGGTAATTTT</canonical_amplicon>
		<polymorphic_amplicon>ACTAGTTGGGGCGTAACTTAATGTCATTTTCCTCTCGGTTCTTGTAACAGATGCCAAAAATAACCAACAGATGAAATGTTTTTGATATTATGATAAACATTTTATCAGTTGACCCCTTTTTGATATCGTGTACAGGAAATGAGTTATATGAGCTCGAAGTTGATATGMCGCGCTGCTAGCTACACAGTCCAGAAACTTTTATTTCCCGACAAATACAATGAGGTTTGTTGAAATGGTAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2320</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>66178</contig_pos>
        <strand>+</strand>
        <context>TATTATTATT[G/T]AAGTTGCTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAAACTGCGGGGATATGTGATGATCCAATTAACGAGATTATATTATTATT</left_flank>
        <right_flank>AAGTTGCTACAAAAAAAAAATACATATACATATACAGGTTTTAATACATA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGATAAACATTTTATCAGTTGACCCCTTTTTGATATCGTGTACAGGAAATGAGTTATATGAGCTCGAAGTTGATATGCCGCGCTGCTAGCTACACAGTCCAGAAACTTTTATTTCCCGACAAATACAATGAGGTTTGTTGAAATGGTAATTTTTTCTGTTTCTTTAAAATCGGAAGTTTTGAGTCTGTTTTCAAAATTGCTAGTCTTATGATAACATGGCTTTTGAACATATTTGGGTATAAGAATCACATCACCGTCCACCAGGTTCTCGACCGTGTAGCTCTGTGACACGACACCTTTATACTCATAATTTGAGCTCAATTATCTCGGCCTCAGTAAGAGGTATCAAAACTCTGTCAACTTCAAAAATGTTGGTGATACTATGATAAACATTTTTGTAGTTACCAACTTTTCGATATCTTTTACAGAAGTCGAGATGATTGAGCTTAAACTGCGGGGATATGTGATGATCCAATTAACGAGATTATATTATTATTTAAGTTGCTACAAAAAAAAAATACATATACATATACAGGTTTTAATACATATACAGGTTTCATATACAGGTTTATATACAGGTTTTAAAACGTTCATATTTTCATAATTAACCTATTTATCCACTTTTTCCATGTTGGTGTCACAAATTATAAAAAAGTGAATACTGGTTCAATTCCTACGTTTTCAGCCAATCGACTTCATTCAGTGGGTATACCAAGTCATACGCCCACATGTGGTTGAATCAGTTATGACTCAAATTGCTGAATTTCAATTTGACGGATCAGTAGTCAGTGAACTTGCCACTGACGCCAAGATGAAGGAACACCTTGGACTCAACGATCAGCAACATTCACTCCTTAAAAGTGAAGCTAGAAAAGTGGTCAATCGGTATCATTTGGAGAAATTTGAAAAGGAAATGGAGCAGTACATGAACGAGTGGTTAATCAAAGAAGCAAAAGGGAAATTTGGAGATGATAATGATGATGATTAGTTCCAATTTT</canonical>
            <polymorphic>TATGATAAACATTTTATCAGTTGACCCCTTTTTGATATCGTGTACAGGAAATGAGTTATATGAGCTCGAAGTTGATATGCCGCGCTGCTAGCTACACAGTCCAGAAACTTTTATTTCCCGACAAATACAATGAGGTTTGTTGAAATGGTAATTTTTTCTGTTTCTTTAAAATCGGAAGTTTTGAGTCTGTTTTCAAAATTGCTAGTCTTATGATAACATGGCTTTTGAACATATTTGGGTATAAGAATCACATCACCGTCCACCAGGTTCTCGACCGTGTAGCTCTGTGACACGACACCTTTATACTCATAATTTGAGCTCAATTATCTCGGCCTCAGTAAGAGGTATCAAAACTCTGTCAACTTCAAAAATGTTGGTGATACTATGATAAACATTTTTGTAGTTACCAACTTTTCGATATCTTTTACAGAAGTCGAGATGATTGAGCTTAAACTGCGGGGATATGTGATGATCCAATTAACGAGATTATATTATTATTKAAGTTGCTACAAAAAAAAAATACATATACATATACAGGTTTTAATACATATACAGGTTTCATATACAGGTTTATATACAGGTTTTAAAACGTTCATATTTTCATAATTAACCTATTTATCCACTTTTTCCATGTTGGTGTCACAAATTATAAAAAAGTGAATACTGGTTCAATTCCTACGTTTTCAGCCAATCGACTTCATTCAGTGGGTATACCAAGTCATACGCCCACATGTGGTTGAATCAGTTATGACTCAAATTGCTGAATTTCAATTTGACGGATCAGTAGTCAGTGAACTTGCCACTGACGCCAAGATGAAGGAACACCTTGGACTCAACGATCAGCAACATTCACTCCTTAAAAGTGAAGCTAGAAAAGTGGTCAATCGGTATCATTTGGAGAAATTTGAAAAGGAAATGGAGCAGTACATGAACGAGTGGTTAATCAAAGAAGCAAAAGGGAAATTTGGAGATGATAATGATGATGATTAGTTCCAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>283 250 166 83 60 43 42 29 23 21</canonical_bands>
                <polymorphic_bands>283 250 166 83 63 60 43 29 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGGGTATAAGAATCACATCAC</pcr_primer_p1>
		<pcr_primer_p2>ACACCAACATGGAAAAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>407</pcr_amplicon_size>
		<canonical_amplicon>TTTGGGTATAAGAATCACATCACCGTCCACCAGGTTCTCGACCGTGTAGCTCTGTGACACGACACCTTTATACTCATAATTTGAGCTCAATTATCTCGGCCTCAGTAAGAGGTATCAAAACTCTGTCAACTTCAAAAATGTTGGTGATACTATGATAAACATTTTTGTAGTTACCAACTTTTCGATATCTTTTACAGAAGTCGAGATGATTGAGCTTAAACTGCGGGGATATGTGATGATCCAATTAACGAGATTATATTATTATTTAAGTTGCTACAAAAAAAAAATACATATACATATACAGGTTTTAATACATATACAGGTTTCATATACAGGTTTATATACAGGTTTTAAAACGTTCATATTTTCATAATTAACCTATTTATCCACTTTTTCCATGTTGGTGT</canonical_amplicon>
		<polymorphic_amplicon>TTTGGGTATAAGAATCACATCACCGTCCACCAGGTTCTCGACCGTGTAGCTCTGTGACACGACACCTTTATACTCATAATTTGAGCTCAATTATCTCGGCCTCAGTAAGAGGTATCAAAACTCTGTCAACTTCAAAAATGTTGGTGATACTATGATAAACATTTTTGTAGTTACCAACTTTTCGATATCTTTTACAGAAGTCGAGATGATTGAGCTTAAACTGCGGGGATATGTGATGATCCAATTAACGAGATTATATTATTATTKAAGTTGCTACAAAAAAAAAATACATATACATATACAGGTTTTAATACATATACAGGTTTCATATACAGGTTTATATACAGGTTTTAAAACGTTCATATTTTCATAATTAACCTATTTATCCACTTTTTCCATGTTGGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2321</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>66143</contig_pos>
        <strand>+</strand>
        <context>TGCGGGRATA[G/T]GTGATGATCC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGATATCTTTTACAGAAGTCGAGATGATTGAGCTTAAACTGCGGGGATA</left_flank>
        <right_flank>GTGATGATCCAATTAACGAGATTATATTATTATTTAAGTTGCTACAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAAAATAACCAACAGATGAAATGTTTTTGATATTATGATAAACATTTTATCAGTTGACCCCTTTTTGATATCGTGTACAGGAAATGAGTTATATGAGCTCGAAGTTGATATGCCGCGCTGCTAGCTACACAGTCCAGAAACTTTTATTTCCCGACAAATACAATGAGGTTTGTTGAAATGGTAATTTTTTCTGTTTCTTTAAAATCGGAAGTTTTGAGTCTGTTTTCAAAATTGCTAGTCTTATGATAACATGGCTTTTGAACATATTTGGGTATAAGAATCACATCACCGTCCACCAGGTTCTCGACCGTGTAGCTCTGTGACACGACACCTTTATACTCATAATTTGAGCTCAATTATCTCGGCCTCAGTAAGAGGTATCAAAACTCTGTCAACTTCAAAAATGTTGGTGATACTATGATAAACATTTTTGTAGTTACCAACTTTTCGATATCTTTTACAGAAGTCGAGATGATTGAGCTTAAACTGCGGGGATATGTGATGATCCAATTAACGAGATTATATTATTATTTAAGTTGCTACAAAAAAAAAATACATATACATATACAGGTTTTAATACATATACAGGTTTCATATACAGGTTTATATACAGGTTTTAAAACGTTCATATTTTCATAATTAACCTATTTATCCACTTTTTCCATGTTGGTGTCACAAATTATAAAAAAGTGAATACTGGTTCAATTCCTACGTTTTCAGCCAATCGACTTCATTCAGTGGGTATACCAAGTCATACGCCCACATGTGGTTGAATCAGTTATGACTCAAATTGCTGAATTTCAATTTGACGGATCAGTAGTCAGTGAACTTGCCACTGACGCCAAGATGAAGGAACACCTTGGACTCAACGATCAGCAACATTCACTCCTTAAAAGTGAAGCTAGAAAAGTGGTCAATCGGTATCATTTGGAGAAATTTGAAAAGGAAATGGAGCAGTACATGAACGAGTGGTTAATCAAAGAAGCAAAAGGGAAATT</canonical>
            <polymorphic>CCAAAAATAACCAACAGATGAAATGTTTTTGATATTATGATAAACATTTTATCAGTTGACCCCTTTTTGATATCGTGTACAGGAAATGAGTTATATGAGCTCGAAGTTGATATGCCGCGCTGCTAGCTACACAGTCCAGAAACTTTTATTTCCCGACAAATACAATGAGGTTTGTTGAAATGGTAATTTTTTCTGTTTCTTTAAAATCGGAAGTTTTGAGTCTGTTTTCAAAATTGCTAGTCTTATGATAACATGGCTTTTGAACATATTTGGGTATAAGAATCACATCACCGTCCACCAGGTTCTCGACCGTGTAGCTCTGTGACACGACACCTTTATACTCATAATTTGAGCTCAATTATCTCGGCCTCAGTAAGAGGTATCAAAACTCTGTCAACTTCAAAAATGTTGGTGATACTATGATAAACATTTTTGTAGTTACCAACTTTTCGATATCTTTTACAGAAGTCGAGATGATTGAGCTTAAACTGCGGGGATAKGTGATGATCCAATTAACGAGATTATATTATTATTTAAGTTGCTACAAAAAAAAAATACATATACATATACAGGTTTTAATACATATACAGGTTTCATATACAGGTTTATATACAGGTTTTAAAACGTTCATATTTTCATAATTAACCTATTTATCCACTTTTTCCATGTTGGTGTCACAAATTATAAAAAAGTGAATACTGGTTCAATTCCTACGTTTTCAGCCAATCGACTTCATTCAGTGGGTATACCAAGTCATACGCCCACATGTGGTTGAATCAGTTATGACTCAAATTGCTGAATTTCAATTTGACGGATCAGTAGTCAGTGAACTTGCCACTGACGCCAAGATGAAGGAACACCTTGGACTCAACGATCAGCAACATTCACTCCTTAAAAGTGAAGCTAGAAAAGTGGTCAATCGGTATCATTTGGAGAAATTTGAAAAGGAAATGGAGCAGTACATGAACGAGTGGTTAATCAAAGAAGCAAAAGGGAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGGGTATAAGAATCACATCAC</pcr_primer_p1>
		<pcr_primer_p2>ACACCAACATGGAAAAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>407</pcr_amplicon_size>
		<canonical_amplicon>TTTGGGTATAAGAATCACATCACCGTCCACCAGGTTCTCGACCGTGTAGCTCTGTGACACGACACCTTTATACTCATAATTTGAGCTCAATTATCTCGGCCTCAGTAAGAGGTATCAAAACTCTGTCAACTTCAAAAATGTTGGTGATACTATGATAAACATTTTTGTAGTTACCAACTTTTCGATATCTTTTACAGAAGTCGAGATGATTGAGCTTAAACTGCGGGGATATGTGATGATCCAATTAACGAGATTATATTATTATTTAAGTTGCTACAAAAAAAAAATACATATACATATACAGGTTTTAATACATATACAGGTTTCATATACAGGTTTATATACAGGTTTTAAAACGTTCATATTTTCATAATTAACCTATTTATCCACTTTTTCCATGTTGGTGT</canonical_amplicon>
		<polymorphic_amplicon>TTTGGGTATAAGAATCACATCACCGTCCACCAGGTTCTCGACCGTGTAGCTCTGTGACACGACACCTTTATACTCATAATTTGAGCTCAATTATCTCGGCCTCAGTAAGAGGTATCAAAACTCTGTCAACTTCAAAAATGTTGGTGATACTATGATAAACATTTTTGTAGTTACCAACTTTTCGATATCTTTTACAGAAGTCGAGATGATTGAGCTTAAACTGCGGGGATAKGTGATGATCCAATTAACGAGATTATATTATTATTTAAGTTGCTACAAAAAAAAAATACATATACATATACAGGTTTTAATACATATACAGGTTTCATATACAGGTTTATATACAGGTTTTAAAACGTTCATATTTTCATAATTAACCTATTTATCCACTTTTTCCATGTTGGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2322</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>66139</contig_pos>
        <strand>+</strand>
        <context>aaaCTGCGGG[A/G]ATAKGTGATG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTTCGATATCTTTTACAGAAGTCGAGATGATTGAGCTTAAACTGCGGG</left_flank>
        <right_flank>ATATGTGATGATCCAATTAACGAGATTATATTATTATTTAAGTTGCTACA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGCCAAAAATAACCAACAGATGAAATGTTTTTGATATTATGATAAACATTTTATCAGTTGACCCCTTTTTGATATCGTGTACAGGAAATGAGTTATATGAGCTCGAAGTTGATATGCCGCGCTGCTAGCTACACAGTCCAGAAACTTTTATTTCCCGACAAATACAATGAGGTTTGTTGAAATGGTAATTTTTTCTGTTTCTTTAAAATCGGAAGTTTTGAGTCTGTTTTCAAAATTGCTAGTCTTATGATAACATGGCTTTTGAACATATTTGGGTATAAGAATCACATCACCGTCCACCAGGTTCTCGACCGTGTAGCTCTGTGACACGACACCTTTATACTCATAATTTGAGCTCAATTATCTCGGCCTCAGTAAGAGGTATCAAAACTCTGTCAACTTCAAAAATGTTGGTGATACTATGATAAACATTTTTGTAGTTACCAACTTTTCGATATCTTTTACAGAAGTCGAGATGATTGAGCTTAAACTGCGGGGATATGTGATGATCCAATTAACGAGATTATATTATTATTTAAGTTGCTACAAAAAAAAAATACATATACATATACAGGTTTTAATACATATACAGGTTTCATATACAGGTTTATATACAGGTTTTAAAACGTTCATATTTTCATAATTAACCTATTTATCCACTTTTTCCATGTTGGTGTCACAAATTATAAAAAAGTGAATACTGGTTCAATTCCTACGTTTTCAGCCAATCGACTTCATTCAGTGGGTATACCAAGTCATACGCCCACATGTGGTTGAATCAGTTATGACTCAAATTGCTGAATTTCAATTTGACGGATCAGTAGTCAGTGAACTTGCCACTGACGCCAAGATGAAGGAACACCTTGGACTCAACGATCAGCAACATTCACTCCTTAAAAGTGAAGCTAGAAAAGTGGTCAATCGGTATCATTTGGAGAAATTTGAAAAGGAAATGGAGCAGTACATGAACGAGTGGTTAATCAAAGAAGCAAAAGGGA</canonical>
            <polymorphic>GATGCCAAAAATAACCAACAGATGAAATGTTTTTGATATTATGATAAACATTTTATCAGTTGACCCCTTTTTGATATCGTGTACAGGAAATGAGTTATATGAGCTCGAAGTTGATATGCCGCGCTGCTAGCTACACAGTCCAGAAACTTTTATTTCCCGACAAATACAATGAGGTTTGTTGAAATGGTAATTTTTTCTGTTTCTTTAAAATCGGAAGTTTTGAGTCTGTTTTCAAAATTGCTAGTCTTATGATAACATGGCTTTTGAACATATTTGGGTATAAGAATCACATCACCGTCCACCAGGTTCTCGACCGTGTAGCTCTGTGACACGACACCTTTATACTCATAATTTGAGCTCAATTATCTCGGCCTCAGTAAGAGGTATCAAAACTCTGTCAACTTCAAAAATGTTGGTGATACTATGATAAACATTTTTGTAGTTACCAACTTTTCGATATCTTTTACAGAAGTCGAGATGATTGAGCTTAAACTGCGGGRATATGTGATGATCCAATTAACGAGATTATATTATTATTTAAGTTGCTACAAAAAAAAAATACATATACATATACAGGTTTTAATACATATACAGGTTTCATATACAGGTTTATATACAGGTTTTAAAACGTTCATATTTTCATAATTAACCTATTTATCCACTTTTTCCATGTTGGTGTCACAAATTATAAAAAAGTGAATACTGGTTCAATTCCTACGTTTTCAGCCAATCGACTTCATTCAGTGGGTATACCAAGTCATACGCCCACATGTGGTTGAATCAGTTATGACTCAAATTGCTGAATTTCAATTTGACGGATCAGTAGTCAGTGAACTTGCCACTGACGCCAAGATGAAGGAACACCTTGGACTCAACGATCAGCAACATTCACTCCTTAAAAGTGAAGCTAGAAAAGTGGTCAATCGGTATCATTTGGAGAAATTTGAAAAGGAAATGGAGCAGTACATGAACGAGTGGTTAATCAAAGAAGCAAAAGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGGGTATAAGAATCACATCAC</pcr_primer_p1>
		<pcr_primer_p2>ACACCAACATGGAAAAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>407</pcr_amplicon_size>
		<canonical_amplicon>TTTGGGTATAAGAATCACATCACCGTCCACCAGGTTCTCGACCGTGTAGCTCTGTGACACGACACCTTTATACTCATAATTTGAGCTCAATTATCTCGGCCTCAGTAAGAGGTATCAAAACTCTGTCAACTTCAAAAATGTTGGTGATACTATGATAAACATTTTTGTAGTTACCAACTTTTCGATATCTTTTACAGAAGTCGAGATGATTGAGCTTAAACTGCGGGGATATGTGATGATCCAATTAACGAGATTATATTATTATTTAAGTTGCTACAAAAAAAAAATACATATACATATACAGGTTTTAATACATATACAGGTTTCATATACAGGTTTATATACAGGTTTTAAAACGTTCATATTTTCATAATTAACCTATTTATCCACTTTTTCCATGTTGGTGT</canonical_amplicon>
		<polymorphic_amplicon>TTTGGGTATAAGAATCACATCACCGTCCACCAGGTTCTCGACCGTGTAGCTCTGTGACACGACACCTTTATACTCATAATTTGAGCTCAATTATCTCGGCCTCAGTAAGAGGTATCAAAACTCTGTCAACTTCAAAAATGTTGGTGATACTATGATAAACATTTTTGTAGTTACCAACTTTTCGATATCTTTTACAGAAGTCGAGATGATTGAGCTTAAACTGCGGGRATATGTGATGATCCAATTAACGAGATTATATTATTATTTAAGTTGCTACAAAAAAAAAATACATATACATATACAGGTTTTAATACATATACAGGTTTCATATACAGGTTTATATACAGGTTTTAAAACGTTCATATTTTCATAATTAACCTATTTATCCACTTTTTCCATGTTGGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2323</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>66296</contig_pos>
        <strand>+</strand>
        <context>TAACCTATTT[A/T]TCCACTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTTTATATACAGGTTTTAAAACGTTCATATTTTCATAATTAACCTATTT</left_flank>
        <right_flank>TCCACTTTTTCCATGTTGGTGTCACAAATTATAAAAAAGTGAATACTGGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACAAATACAATGAGGTTTGTTGAAATGGTAATTTTTTCTGTTTCTTTAAAATCGGAAGTTTTGAGTCTGTTTTCAAAATTGCTAGTCTTATGATAACATGGCTTTTGAACATATTTGGGTATAAGAATCACATCACCGTCCACCAGGTTCTCGACCGTGTAGCTCTGTGACACGACACCTTTATACTCATAATTTGAGCTCAATTATCTCGGCCTCAGTAAGAGGTATCAAAACTCTGTCAACTTCAAAAATGTTGGTGATACTATGATAAACATTTTTGTAGTTACCAACTTTTCGATATCTTTTACAGAAGTCGAGATGATTGAGCTTAAACTGCGGGGATATGTGATGATCCAATTAACGAGATTATATTATTATTTAAGTTGCTACAAAAAAAAAATACATATACATATACAGGTTTTAATACATATACAGGTTTCATATACAGGTTTATATACAGGTTTTAAAACGTTCATATTTTCATAATTAACCTATTTATCCACTTTTTCCATGTTGGTGTCACAAATTATAAAAAAGTGAATACTGGTTCAATTCCTACGTTTTCAGCCAATCGACTTCATTCAGTGGGTATACCAAGTCATACGCCCACATGTGGTTGAATCAGTTATGACTCAAATTGCTGAATTTCAATTTGACGGATCAGTAGTCAGTGAACTTGCCACTGACGCCAAGATGAAGGAACACCTTGGACTCAACGATCAGCAACATTCACTCCTTAAAAGTGAAGCTAGAAAAGTGGTCAATCGGTATCATTTGGAGAAATTTGAAAAGGAAATGGAGCAGTACATGAACGAGTGGTTAATCAAAGAAGCAAAAGGGAAATTTGGAGATGATAATGATGATGATTAGTTCCAATTTTGAGTCTCCTTTTTGTTATTGGGCGTTGCTGTTTTTACATTTCATTTTTCTACACTAATAAAATCCATATTTTACTGTTTCTTATTTAACACTTCAGAATTGTTATTTCGAACATTATA</canonical>
            <polymorphic>CGACAAATACAATGAGGTTTGTTGAAATGGTAATTTTTTCTGTTTCTTTAAAATCGGAAGTTTTGAGTCTGTTTTCAAAATTGCTAGTCTTATGATAACATGGCTTTTGAACATATTTGGGTATAAGAATCACATCACCGTCCACCAGGTTCTCGACCGTGTAGCTCTGTGACACGACACCTTTATACTCATAATTTGAGCTCAATTATCTCGGCCTCAGTAAGAGGTATCAAAACTCTGTCAACTTCAAAAATGTTGGTGATACTATGATAAACATTTTTGTAGTTACCAACTTTTCGATATCTTTTACAGAAGTCGAGATGATTGAGCTTAAACTGCGGGGATATGTGATGATCCAATTAACGAGATTATATTATTATTTAAGTTGCTACAAAAAAAAAATACATATACATATACAGGTTTTAATACATATACAGGTTTCATATACAGGTTTATATACAGGTTTTAAAACGTTCATATTTTCATAATTAACCTATTTWTCCACTTTTTCCATGTTGGTGTCACAAATTATAAAAAAGTGAATACTGGTTCAATTCCTACGTTTTCAGCCAATCGACTTCATTCAGTGGGTATACCAAGTCATACGCCCACATGTGGTTGAATCAGTTATGACTCAAATTGCTGAATTTCAATTTGACGGATCAGTAGTCAGTGAACTTGCCACTGACGCCAAGATGAAGGAACACCTTGGACTCAACGATCAGCAACATTCACTCCTTAAAAGTGAAGCTAGAAAAGTGGTCAATCGGTATCATTTGGAGAAATTTGAAAAGGAAATGGAGCAGTACATGAACGAGTGGTTAATCAAAGAAGCAAAAGGGAAATTTGGAGATGATAATGATGATGATTAGTTCCAATTTTGAGTCTCCTTTTTGTTATTGGGCGTTGCTGTTTTTACATTTCATTTTTCTACACTAATAAAATCCATATTTTACTGTTTCTTATTTAACACTTCAGAATTGTTATTTCGAACATTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATGATCCAATTAACGAGATT</pcr_primer_p1>
		<pcr_primer_p2>GGTATACCCACTGAATGAAGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGATGATCCAATTAACGAGATTATATTATTATTTAAGTTGCTACAAAAAAAAAATACATATACATATACAGGTTTTAATACATATACAGGTTTCATATACAGGTTTATATACAGGTTTTAAAACGTTCATATTTTCATAATTAACCTATTTATCCACTTTTTCCATGTTGGTGTCACAAATTATAAAAAAGTGAATACTGGTTCAATTCCTACGTTTTCAGCCAATCGACTTCATTCAGTGGGTATACC</canonical_amplicon>
		<polymorphic_amplicon>TGATGATCCAATTAACGAGATTATATTATTATTTAAGTTGCTACAAAAAAAAAATACATATACATATACAGGTTTTAATACATATACAGGTTTCATATACAGGTTTATATACAGGTTTTAAAACGTTCATATTTTCATAATTAACCTATTTWTCCACTTTTTCCATGTTGGTGTCACAAATTATAAAAAAGTGAATACTGGTTCAATTCCTACGTTTTCAGCCAATCGACTTCATTCAGTGGGTATACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2330</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>252293</contig_pos>
        <strand>+</strand>
        <context>CGAAAATGAG[C/T]AATTTTTGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTCTGTTTTCTATCTATTAGAATAGATGTTCACTAATCCGAAAATGAG</left_flank>
        <right_flank>AATTTTTGGTCTACACATTAAGATTATAATCACGGTTAAAAAAATTTCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCGAGGCAAAGCGGTAAAAAATATTTCAGACTTTCGCGTCTTTTTCGAAAGTTTAGTTTGGTTTTTGGTAGGAAAACAGACTCTAGAGATGCTAGAAAGCATGTTTTCCAAGAGAAACACGAAATTCGGTTCGAAAAATAAAAAGCTTTTTTTCAACTATTGAATTTGAACATAGCGGAAAAAATCCGATCAATGATAAAATTAACTTGGAACGGAACATTTTAGAAAAGTTGACGCTGATCTACACAGCTCGTAATCACATTTTCATTACCATCGAAAGTTAAGAAAGCCGAGAAACGGACATCCAAGGCTTAAATAAAACTTGGCTTTCGAAAATTGTTTTGAAAATTGTAGGCAATATATCATTTGAATCTTCTGAAAATAGTCATTCTGAAACTGTGATATTTTAATATTTCTTTGCTATTAATTTTAAGACGAAATCAAATATTTCTGTTTTCTATCTATTAGAATAGATGTTCACTAATCCGAAAATGAGCAATTTTTGGTCTACACATTAAGATTATAATCACGGTTAAAAAAATTTCTGCGAAGTGGATTATAGTAATCTGAAATTTTACAAAAAAAAAAGATCAAATCATCTTCCCAAAATGATGTTTTTCAAAATATATCTATCACGAAACATAACTTTTTGCGGTTCATAGAAAGTTCACATAAAAAACGTTAAACTGAAAATTGTAAAAGAAAGGATAAGTCTAGTTTCATGATATGCTGAAAATATAAAACCACCTACCTGAAATTTCTTTGATTTCTGTTTTTCAAGCTGTCATTCTAGGAAACTAAAATAATAATAATAAGTTTACTGTTTCATGTGGTGCTGAAAGTTTTAAAATATAAGTCAATTTCAGTTCAACATCGTATTCCAGTGAATCAATTGACTGTATCCAGTCAAAAATTCACGGCAAATACTCATTAGGTTGATGATCTCTTGCTAAATGCTCACTTGCTAAATATGCTCATCTGCTAAACTCGCTCATTT</canonical>
            <polymorphic>TTTCCGAGGCAAAGCGGTAAAAAATATTTCAGACTTTCGCGTCTTTTTCGAAAGTTTAGTTTGGTTTTTGGTAGGAAAACAGACTCTAGAGATGCTAGAAAGCATGTTTTCCAAGAGAAACACGAAATTCGGTTCGAAAAATAAAAAGCTTTTTTTCAACTATTGAATTTGAACATAGCGGAAAAAATCCGATCAATGATAAAATTAACTTGGAACGGAACATTTTAGAAAAGTTGACGCTGATCTACACAGCTCGTAATCACATTTTCATTACCATCGAAAGTTAAGAAAGCCGAGAAACGGACATCCAAGGCTTAAATAAAACTTGGCTTTCGAAAATTGTTTTGAAAATTGTAGGCAATATATCATTTGAATCTTCTGAAAATAGTCATTCTGAAACTGTGATATTTTAATATTTCTTTGCTATTAATTTTAAGACGAAATCAAATATTTCTGTTTTCTATCTATTAGAATAGATGTTCACTAATCCGAAAATGAGYAATTTTTGGTCTACACATTAAGATTATAATCACGGTTAAAAAAATTTCTGCGAAGTGGATTATAGTAATCTGAAATTTTACAAAAAAAAAAGATCAAATCATCTTCCCAAAATGATGTTTTTCAAAATATATCTATCACGAAACATAACTTTTTGCGGTTCATAGAAAGTTCACATAAAAAACGTTAAACTGAAAATTGTAAAAGAAAGGATAAGTCTAGTTTCATGATATGCTGAAAATATAAAACCACCTACCTGAAATTTCTTTGATTTCTGTTTTTCAAGCTGTCATTCTAGGAAACTAAAATAATAATAATAAGTTTACTGTTTCATGTGGTGCTGAAAGTTTTAAAATATAAGTCAATTTCAGTTCAACATCGTATTCCAGTGAATCAATTGACTGTATCCAGTCAAAAATTCACGGCAAATACTCATTAGGTTGATGATCTCTTGCTAAATGCTCACTTGCTAAATATGCTCATCTGCTAAACTCGCTCATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTGAAAATAGTCATTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAACATCATTTTGGGAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTTCTGAAAATAGTCATTCTGAAACTGTGATATTTTAATATTTCTTTGCTATTAATTTTAAGACGAAATCAAATATTTCTGTTTTCTATCTATTAGAATAGATGTTCACTAATCCGAAAATGAGCAATTTTTGGTCTACACATTAAGATTATAATCACGGTTAAAAAAATTTCTGCGAAGTGGATTATAGTAATCTGAAATTTTACAAAAAAAAAAGATCAAATCATCTTCCCAAAATGATGTTTT</canonical_amplicon>
		<polymorphic_amplicon>CTTCTGAAAATAGTCATTCTGAAACTGTGATATTTTAATATTTCTTTGCTATTAATTTTAAGACGAAATCAAATATTTCTGTTTTCTATCTATTAGAATAGATGTTCACTAATCCGAAAATGAGYAATTTTTGGTCTACACATTAAGATTATAATCACGGTTAAAAAAATTTCTGCGAAGTGGATTATAGTAATCTGAAATTTTACAAAAAAAAAAGATCAAATCATCTTCCCAAAATGATGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2331</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>252462</contig_pos>
        <strand>+</strand>
        <context>TTCATAGAAA[A/G]TTCACATAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCAAAATATATCTATCACGAAACATAACTTTTTGCGGTTCATAGAAA</left_flank>
        <right_flank>TTCACATAAAAAACGTTAAACTGAAAATTGTAAAAGAAAGGATAAGTCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAACATAGCGGAAAAAATCCGATCAATGATAAAATTAACTTGGAACGGAACATTTTAGAAAAGTTGACGCTGATCTACACAGCTCGTAATCACATTTTCATTACCATCGAAAGTTAAGAAAGCCGAGAAACGGACATCCAAGGCTTAAATAAAACTTGGCTTTCGAAAATTGTTTTGAAAATTGTAGGCAATATATCATTTGAATCTTCTGAAAATAGTCATTCTGAAACTGTGATATTTTAATATTTCTTTGCTATTAATTTTAAGACGAAATCAAATATTTCTGTTTTCTATCTATTAGAATAGATGTTCACTAATCCGAAAATGAGCAATTTTTGGTCTACACATTAAGATTATAATCACGGTTAAAAAAATTTCTGCGAAGTGGATTATAGTAATCTGAAATTTTACAAAAAAAAAAGATCAAATCATCTTCCCAAAATGATGTTTTTCAAAATATATCTATCACGAAACATAACTTTTTGCGGTTCATAGAAAGTTCACATAAAAAACGTTAAACTGAAAATTGTAAAAGAAAGGATAAGTCTAGTTTCATGATATGCTGAAAATATAAAACCACCTACCTGAAATTTCTTTGATTTCTGTTTTTCAAGCTGTCATTCTAGGAAACTAAAATAATAATAATAAGTTTACTGTTTCATGTGGTGCTGAAAGTTTTAAAATATAAGTCAATTTCAGTTCAACATCGTATTCCAGTGAATCAATTGACTGTATCCAGTCAAAAATTCACGGCAAATACTCATTAGGTTGATGATCTCTTGCTAAATGCTCACTTGCTAAATATGCTCATCTGCTAAACTCGCTCATTTGCTAAAATAGTCACACTTGCTAAATTTCATTTGCTAAATTTTGATCATTCGCTAAAAATGAAAAAGTGGAAATTTTGCTGTTATTTGCTAATTTCAGTACTTTTTGACTGAATTTTTTACAGAATATTCCGGTTTTTGCTTTAAATTTCAGGCTTAGGCTTTAACACCT</canonical>
            <polymorphic>TGAACATAGCGGAAAAAATCCGATCAATGATAAAATTAACTTGGAACGGAACATTTTAGAAAAGTTGACGCTGATCTACACAGCTCGTAATCACATTTTCATTACCATCGAAAGTTAAGAAAGCCGAGAAACGGACATCCAAGGCTTAAATAAAACTTGGCTTTCGAAAATTGTTTTGAAAATTGTAGGCAATATATCATTTGAATCTTCTGAAAATAGTCATTCTGAAACTGTGATATTTTAATATTTCTTTGCTATTAATTTTAAGACGAAATCAAATATTTCTGTTTTCTATCTATTAGAATAGATGTTCACTAATCCGAAAATGAGCAATTTTTGGTCTACACATTAAGATTATAATCACGGTTAAAAAAATTTCTGCGAAGTGGATTATAGTAATCTGAAATTTTACAAAAAAAAAAGATCAAATCATCTTCCCAAAATGATGTTTTTCAAAATATATCTATCACGAAACATAACTTTTTGCGGTTCATAGAAARTTCACATAAAAAACGTTAAACTGAAAATTGTAAAAGAAAGGATAAGTCTAGTTTCATGATATGCTGAAAATATAAAACCACCTACCTGAAATTTCTTTGATTTCTGTTTTTCAAGCTGTCATTCTAGGAAACTAAAATAATAATAATAAGTTTACTGTTTCATGTGGTGCTGAAAGTTTTAAAATATAAGTCAATTTCAGTTCAACATCGTATTCCAGTGAATCAATTGACTGTATCCAGTCAAAAATTCACGGCAAATACTCATTAGGTTGATGATCTCTTGCTAAATGCTCACTTGCTAAATATGCTCATCTGCTAAACTCGCTCATTTGCTAAAATAGTCACACTTGCTAAATTTCATTTGCTAAATTTTGATCATTCGCTAAAAATGAAAAAGTGGAAATTTTGCTGTTATTTGCTAATTTCAGTACTTTTTGACTGAATTTTTTACAGAATATTCCGGTTTTTGCTTTAAATTTCAGGCTTAGGCTTTAACACCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>348 246 160 150 66 30</canonical_bands>
                <polymorphic_bands>348 310 246 66 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCAAAATGATGTTTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>TATTTTAAAACTTTCAGCACCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCCAAAATGATGTTTTTCAAAATATATCTATCACGAAACATAACTTTTTGCGGTTCATAGAAAGTTCACATAAAAAACGTTAAACTGAAAATTGTAAAAGAAAGGATAAGTCTAGTTTCATGATATGCTGAAAATATAAAACCACCTACCTGAAATTTCTTTGATTTCTGTTTTTCAAGCTGTCATTCTAGGAAACTAAAATAATAATAATAAGTTTACTGTTTCATGTGGTGCTGAAAGTTTTAAAATA</canonical_amplicon>
		<polymorphic_amplicon>CCCAAAATGATGTTTTTCAAAATATATCTATCACGAAACATAACTTTTTGCGGTTCATAGAAARTTCACATAAAAAACGTTAAACTGAAAATTGTAAAAGAAAGGATAAGTCTAGTTTCATGATATGCTGAAAATATAAAACCACCTACCTGAAATTTCTTTGATTTCTGTTTTTCAAGCTGTCATTCTAGGAAACTAAAATAATAATAATAAGTTTACTGTTTCATGTGGTGCTGAAAGTTTTAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2332</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>252479</contig_pos>
        <strand>+</strand>
        <context>TAAAAAACGT[G/T]AAAYTGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCACGAAACATAACTTTTTGCGGTTCATAGAAAGTTCACATAAAAAACGT</left_flank>
        <right_flank>AAACTGAAAATTGTAAAAGAAAGGATAAGTCTAGTTTCATGATATGCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCGATCAATGATAAAATTAACTTGGAACGGAACATTTTAGAAAAGTTGACGCTGATCTACACAGCTCGTAATCACATTTTCATTACCATCGAAAGTTAAGAAAGCCGAGAAACGGACATCCAAGGCTTAAATAAAACTTGGCTTTCGAAAATTGTTTTGAAAATTGTAGGCAATATATCATTTGAATCTTCTGAAAATAGTCATTCTGAAACTGTGATATTTTAATATTTCTTTGCTATTAATTTTAAGACGAAATCAAATATTTCTGTTTTCTATCTATTAGAATAGATGTTCACTAATCCGAAAATGAGCAATTTTTGGTCTACACATTAAGATTATAATCACGGTTAAAAAAATTTCTGCGAAGTGGATTATAGTAATCTGAAATTTTACAAAAAAAAAAGATCAAATCATCTTCCCAAAATGATGTTTTTCAAAATATATCTATCACGAAACATAACTTTTTGCGGTTCATAGAAAGTTCACATAAAAAACGTTAAACTGAAAATTGTAAAAGAAAGGATAAGTCTAGTTTCATGATATGCTGAAAATATAAAACCACCTACCTGAAATTTCTTTGATTTCTGTTTTTCAAGCTGTCATTCTAGGAAACTAAAATAATAATAATAAGTTTACTGTTTCATGTGGTGCTGAAAGTTTTAAAATATAAGTCAATTTCAGTTCAACATCGTATTCCAGTGAATCAATTGACTGTATCCAGTCAAAAATTCACGGCAAATACTCATTAGGTTGATGATCTCTTGCTAAATGCTCACTTGCTAAATATGCTCATCTGCTAAACTCGCTCATTTGCTAAAATAGTCACACTTGCTAAATTTCATTTGCTAAATTTTGATCATTCGCTAAAAATGAAAAAGTGGAAATTTTGCTGTTATTTGCTAATTTCAGTACTTTTTGACTGAATTTTTTACAGAATATTCCGGTTTTTGCTTTAAATTTCAGGCTTAGGCTTTAACACCTGTTTTCCTGTAAAAAGT</canonical>
            <polymorphic>ATCCGATCAATGATAAAATTAACTTGGAACGGAACATTTTAGAAAAGTTGACGCTGATCTACACAGCTCGTAATCACATTTTCATTACCATCGAAAGTTAAGAAAGCCGAGAAACGGACATCCAAGGCTTAAATAAAACTTGGCTTTCGAAAATTGTTTTGAAAATTGTAGGCAATATATCATTTGAATCTTCTGAAAATAGTCATTCTGAAACTGTGATATTTTAATATTTCTTTGCTATTAATTTTAAGACGAAATCAAATATTTCTGTTTTCTATCTATTAGAATAGATGTTCACTAATCCGAAAATGAGCAATTTTTGGTCTACACATTAAGATTATAATCACGGTTAAAAAAATTTCTGCGAAGTGGATTATAGTAATCTGAAATTTTACAAAAAAAAAAGATCAAATCATCTTCCCAAAATGATGTTTTTCAAAATATATCTATCACGAAACATAACTTTTTGCGGTTCATAGAAAGTTCACATAAAAAACGTKAAACTGAAAATTGTAAAAGAAAGGATAAGTCTAGTTTCATGATATGCTGAAAATATAAAACCACCTACCTGAAATTTCTTTGATTTCTGTTTTTCAAGCTGTCATTCTAGGAAACTAAAATAATAATAATAAGTTTACTGTTTCATGTGGTGCTGAAAGTTTTAAAATATAAGTCAATTTCAGTTCAACATCGTATTCCAGTGAATCAATTGACTGTATCCAGTCAAAAATTCACGGCAAATACTCATTAGGTTGATGATCTCTTGCTAAATGCTCACTTGCTAAATATGCTCATCTGCTAAACTCGCTCATTTGCTAAAATAGTCACACTTGCTAAATTTCATTTGCTAAATTTTGATCATTCGCTAAAAATGAAAAAGTGGAAATTTTGCTGTTATTTGCTAATTTCAGTACTTTTTGACTGAATTTTTTACAGAATATTCCGGTTTTTGCTTTAAATTTCAGGCTTAGGCTTTAACACCTGTTTTCCTGTAAAAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>293 163 149 95 85 79 31 25 20 19 18 17 6</canonical_bands>
                <polymorphic_bands>312 293 95 85 79 31 25 20 19 18 17 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCAAAATGATGTTTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>TATTTTAAAACTTTCAGCACCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCCAAAATGATGTTTTTCAAAATATATCTATCACGAAACATAACTTTTTGCGGTTCATAGAAAGTTCACATAAAAAACGTTAAACTGAAAATTGTAAAAGAAAGGATAAGTCTAGTTTCATGATATGCTGAAAATATAAAACCACCTACCTGAAATTTCTTTGATTTCTGTTTTTCAAGCTGTCATTCTAGGAAACTAAAATAATAATAATAAGTTTACTGTTTCATGTGGTGCTGAAAGTTTTAAAATA</canonical_amplicon>
		<polymorphic_amplicon>CCCAAAATGATGTTTTTCAAAATATATCTATCACGAAACATAACTTTTTGCGGTTCATAGAAAGTTCACATAAAAAACGTKAAACTGAAAATTGTAAAAGAAAGGATAAGTCTAGTTTCATGATATGCTGAAAATATAAAACCACCTACCTGAAATTTCTTTGATTTCTGTTTTTCAAGCTGTCATTCTAGGAAACTAAAATAATAATAATAAGTTTACTGTTTCATGTGGTGCTGAAAGTTTTAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2333</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>252483</contig_pos>
        <strand>+</strand>
        <context>AAACGTKAAA[C/T]TGAAAATTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAACATAACTTTTTGCGGTTCATAGAAAGTTCACATAAAAAACGTTAAA</left_flank>
        <right_flank>TGAAAATTGTAAAAGAAAGGATAAGTCTAGTTTCATGATATGCTGAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCAATGATAAAATTAACTTGGAACGGAACATTTTAGAAAAGTTGACGCTGATCTACACAGCTCGTAATCACATTTTCATTACCATCGAAAGTTAAGAAAGCCGAGAAACGGACATCCAAGGCTTAAATAAAACTTGGCTTTCGAAAATTGTTTTGAAAATTGTAGGCAATATATCATTTGAATCTTCTGAAAATAGTCATTCTGAAACTGTGATATTTTAATATTTCTTTGCTATTAATTTTAAGACGAAATCAAATATTTCTGTTTTCTATCTATTAGAATAGATGTTCACTAATCCGAAAATGAGCAATTTTTGGTCTACACATTAAGATTATAATCACGGTTAAAAAAATTTCTGCGAAGTGGATTATAGTAATCTGAAATTTTACAAAAAAAAAAGATCAAATCATCTTCCCAAAATGATGTTTTTCAAAATATATCTATCACGAAACATAACTTTTTGCGGTTCATAGAAAGTTCACATAAAAAACGTTAAACTGAAAATTGTAAAAGAAAGGATAAGTCTAGTTTCATGATATGCTGAAAATATAAAACCACCTACCTGAAATTTCTTTGATTTCTGTTTTTCAAGCTGTCATTCTAGGAAACTAAAATAATAATAATAAGTTTACTGTTTCATGTGGTGCTGAAAGTTTTAAAATATAAGTCAATTTCAGTTCAACATCGTATTCCAGTGAATCAATTGACTGTATCCAGTCAAAAATTCACGGCAAATACTCATTAGGTTGATGATCTCTTGCTAAATGCTCACTTGCTAAATATGCTCATCTGCTAAACTCGCTCATTTGCTAAAATAGTCACACTTGCTAAATTTCATTTGCTAAATTTTGATCATTCGCTAAAAATGAAAAAGTGGAAATTTTGCTGTTATTTGCTAATTTCAGTACTTTTTGACTGAATTTTTTACAGAATATTCCGGTTTTTGCTTTAAATTTCAGGCTTAGGCTTTAACACCTGTTTTCCTGTAAAAAGTTTCA</canonical>
            <polymorphic>GATCAATGATAAAATTAACTTGGAACGGAACATTTTAGAAAAGTTGACGCTGATCTACACAGCTCGTAATCACATTTTCATTACCATCGAAAGTTAAGAAAGCCGAGAAACGGACATCCAAGGCTTAAATAAAACTTGGCTTTCGAAAATTGTTTTGAAAATTGTAGGCAATATATCATTTGAATCTTCTGAAAATAGTCATTCTGAAACTGTGATATTTTAATATTTCTTTGCTATTAATTTTAAGACGAAATCAAATATTTCTGTTTTCTATCTATTAGAATAGATGTTCACTAATCCGAAAATGAGCAATTTTTGGTCTACACATTAAGATTATAATCACGGTTAAAAAAATTTCTGCGAAGTGGATTATAGTAATCTGAAATTTTACAAAAAAAAAAGATCAAATCATCTTCCCAAAATGATGTTTTTCAAAATATATCTATCACGAAACATAACTTTTTGCGGTTCATAGAAAGTTCACATAAAAAACGTTAAAYTGAAAATTGTAAAAGAAAGGATAAGTCTAGTTTCATGATATGCTGAAAATATAAAACCACCTACCTGAAATTTCTTTGATTTCTGTTTTTCAAGCTGTCATTCTAGGAAACTAAAATAATAATAATAAGTTTACTGTTTCATGTGGTGCTGAAAGTTTTAAAATATAAGTCAATTTCAGTTCAACATCGTATTCCAGTGAATCAATTGACTGTATCCAGTCAAAAATTCACGGCAAATACTCATTAGGTTGATGATCTCTTGCTAAATGCTCACTTGCTAAATATGCTCATCTGCTAAACTCGCTCATTTGCTAAAATAGTCACACTTGCTAAATTTCATTTGCTAAATTTTGATCATTCGCTAAAAATGAAAAAGTGGAAATTTTGCTGTTATTTGCTAATTTCAGTACTTTTTGACTGAATTTTTTACAGAATATTCCGGTTTTTGCTTTAAATTTCAGGCTTAGGCTTTAACACCTGTTTTCCTGTAAAAAGTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCAAAATGATGTTTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>TATTTTAAAACTTTCAGCACCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCCAAAATGATGTTTTTCAAAATATATCTATCACGAAACATAACTTTTTGCGGTTCATAGAAAGTTCACATAAAAAACGTTAAACTGAAAATTGTAAAAGAAAGGATAAGTCTAGTTTCATGATATGCTGAAAATATAAAACCACCTACCTGAAATTTCTTTGATTTCTGTTTTTCAAGCTGTCATTCTAGGAAACTAAAATAATAATAATAAGTTTACTGTTTCATGTGGTGCTGAAAGTTTTAAAATA</canonical_amplicon>
		<polymorphic_amplicon>CCCAAAATGATGTTTTTCAAAATATATCTATCACGAAACATAACTTTTTGCGGTTCATAGAAAGTTCACATAAAAAACGTTAAAYTGAAAATTGTAAAAGAAAGGATAAGTCTAGTTTCATGATATGCTGAAAATATAAAACCACCTACCTGAAATTTCTTTGATTTCTGTTTTTCAAGCTGTCATTCTAGGAAACTAAAATAATAATAATAAGTTTACTGTTTCATGTGGTGCTGAAAGTTTTAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2337</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>253856</contig_pos>
        <strand>+</strand>
        <context>TAACATAGAG[C/T]CATAAATGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCGTCCTCAGCCCTTTTTTCGGGGACAGTACCAAATCACTAACATAGAG</left_flank>
        <right_flank>CATAAATGAAATAATTCTTACATTTTTTTGGAAATCATTGTAAAACTAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCAGTGATATTCAAAAATTTTGTTAGATTTTTTCCAGTTTCACATTATGCTGAAAATGTAAACCTATGACTTGTTTTTTGACCCAGTTTAACCATATACTTGTGTTCCAAATTTTCGAAATTTCGAAACAGAAAACATTCATTTGATTCCTCCCAGGAATAAAAAAAAAGTTCCTTTATGAACAAATCACGTTTTTCAGATTTTCTTATCACTAACCAAACTGTTTTACAAACCTAATAAAAATTCCTCATAATAATGTACTTTTGTGGTTTAACTTATGACGATAATTGAACAAATAAATGTTGTAGTTTCTGAAACTTGAGAAGTTTGGCATTTAATAGAACATAATAATACGTAGGTGAATTCTTACCATACAAATATCACAGTTAGCGTTCGAAATCGGGACGCCCGCTTTCGCTGGGCGACCCATTTTAGGGGACGGGGGACGGTCGTCCTCAGCCCTTTTTTCGGGGACAGTACCAAATCACTAACATAGAGTCATAAATGAAATAATTCTTACATTTTTTTGGAAATCATTGTAAAACTAATTTTTTTTTGAAATTCGCATCTTTTGTAGAAATTTGGAAAATCAAAATATCTGTTTCATATTCGTTTTATTTTTGAAAACAACTTTTGAAAAAGATTAACTGTTACGTTTTTTCCAAAATTGCAAGCCAAAAGAAGAGTTTCAGCAAAAAATAATTCTCGGAAAATCCAAAAAAAAAAACATACAATTGTCACAAAAGGGACACAAATGTTTCCAATGGCAGCAAAAAGGTTGAAATTCGAAAAAGGTGTAACTTCATTGTAATCATTTTTTGAAAATTGCCATACATATGAAGCGACGAATCAAAATCAGAATTCACAGAAAATTAAAGTCAACATCTTGAAACAGGTATTTTTGGTAATTGAGAAAAAAAAAGGAATTTCAAATGTTCAGTAAACTCTGGATTAGTACTGGATCAGTGCGATCCAAGAGTGAAACAGAAAAAAAAACGT</canonical>
            <polymorphic>AGCAGTGATATTCAAAAATTTTGTTAGATTTTTTCCAGTTTCACATTATGCTGAAAATGTAAACCTATGACTTGTTTTTTGACCCAGTTTAACCATATACTTGTGTTCCAAATTTTCGAAATTTCGAAACAGAAAACATTCATTTGATTCCTCCCAGGAATAAAAAAAAAGTTCCTTTATGAACAAATCACGTTTTTCAGATTTTCTTATCACTAACCAAACTGTTTTACAAACCTAATAAAAATTCCTCATAATAATGTACTTTTGTGGTTTAACTTATGACGATAATTGAACAAATAAATGTTGTAGTTTCTGAAACTTGAGAAGTTTGGCATTTAATAGAACATAATAATACGTAGGTGAATTCTTACCATACAAATATCACAGTTAGCGTTCGAAATCGGGACGCCCGCTTTCGCTGGGCGACCCATTTTAGGGGACGGGGGACGGTCGTCCTCAGCCCTTTTTTCGGGGACAGTACCAAATCACTAACATAGAGYCATAAATGAAATAATTCTTACATTTTTTTGGAAATCATTGTAAAACTAATTTTTTTTTGAAATTCGCATCTTTTGTAGAAATTTGGAAAATCAAAATATCTGTTTCATATTCGTTTTATTTTTGAAAACAACTTTTGAAAAAGATTAACTGTTACGTTTTTTCCAAAATTGCAAGCCAAAAGAAGAGTTTCAGCAAAAAATAATTCTCGGAAAATCCAAAAAAAAAAACATACAATTGTCACAAAAGGGACACAAATGTTTCCAATGGCAGCAAAAAGGTTGAAATTCGAAAAAGGTGTAACTTCATTGTAATCATTTTTTGAAAATTGCCATACATATGAAGCGACGAATCAAAATCAGAATTCACAGAAAATTAAAGTCAACATCTTGAAACAGGTATTTTTGGTAATTGAGAAAAAAAAAGGAATTTCAAATGTTCAGTAAACTCTGGATTAGTACTGGATCAGTGCGATCCAAGAGTGAAACAGAAAAAAAAACGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>351 351 152 146</canonical_bands>
                <polymorphic_bands>702 152 146</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATACGTAGGTGAATTCTTACCA</pcr_primer_p1>
		<pcr_primer_p2>TTTCCAAATTTCTACAAAAGATG</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AATACGTAGGTGAATTCTTACCATACAAATATCACAGTTAGCGTTCGAAATCGGGACGCCCGCTTTCGCTGGGCGACCCATTTTAGGGGACGGGGGACGGTCGTCCTCAGCCCTTTTTTCGGGGACAGTACCAAATCACTAACATAGAGTCATAAATGAAATAATTCTTACATTTTTTTGGAAATCATTGTAAAACTAATTTTTTTTTGAAATTCGCATCTTTTGTAGAAATTTGGAAA</canonical_amplicon>
		<polymorphic_amplicon>AATACGTAGGTGAATTCTTACCATACAAATATCACAGTTAGCGTTCGAAATCGGGACGCCCGCTTTCGCTGGGCGACCCATTTTAGGGGACGGGGGACGGTCGTCCTCAGCCCTTTTTTCGGGGACAGTACCAAATCACTAACATAGAGYCATAAATGAAATAATTCTTACATTTTTTTGGAAATCATTGTAAAACTAATTTTTTTTTGAAATTCGCATCTTTTGTAGAAATTTGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2338</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>253834</contig_pos>
        <strand>+</strand>
        <context>TTCGGGGACA[A/G]TACCAAATCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCATTTTAGGGGACGGGGGACGGTCGTCCTCAGCCCTTTTTTCGGGGACA</left_flank>
        <right_flank>TACCAAATCACTAACATAGAGTCATAAATGAAATAATTCTTACATTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTTAATTTTTTGAATTTTTTAGCAGTGATATTCAAAAATTTTGTTAGATTTTTTCCAGTTTCACATTATGCTGAAAATGTAAACCTATGACTTGTTTTTTGACCCAGTTTAACCATATACTTGTGTTCCAAATTTTCGAAATTTCGAAACAGAAAACATTCATTTGATTCCTCCCAGGAATAAAAAAAAAGTTCCTTTATGAACAAATCACGTTTTTCAGATTTTCTTATCACTAACCAAACTGTTTTACAAACCTAATAAAAATTCCTCATAATAATGTACTTTTGTGGTTTAACTTATGACGATAATTGAACAAATAAATGTTGTAGTTTCTGAAACTTGAGAAGTTTGGCATTTAATAGAACATAATAATACGTAGGTGAATTCTTACCATACAAATATCACAGTTAGCGTTCGAAATCGGGACGCCCGCTTTCGCTGGGCGACCCATTTTAGGGGACGGGGGACGGTCGTCCTCAGCCCTTTTTTCGGGGACAGTACCAAATCACTAACATAGAGTCATAAATGAAATAATTCTTACATTTTTTTGGAAATCATTGTAAAACTAATTTTTTTTTGAAATTCGCATCTTTTGTAGAAATTTGGAAAATCAAAATATCTGTTTCATATTCGTTTTATTTTTGAAAACAACTTTTGAAAAAGATTAACTGTTACGTTTTTTCCAAAATTGCAAGCCAAAAGAAGAGTTTCAGCAAAAAATAATTCTCGGAAAATCCAAAAAAAAAAACATACAATTGTCACAAAAGGGACACAAATGTTTCCAATGGCAGCAAAAAGGTTGAAATTCGAAAAAGGTGTAACTTCATTGTAATCATTTTTTGAAAATTGCCATACATATGAAGCGACGAATCAAAATCAGAATTCACAGAAAATTAAAGTCAACATCTTGAAACAGGTATTTTTGGTAATTGAGAAAAAAAAAGGAATTTCAAATGTTCAGTAAACTCTGGATTAGTACTGGATCAGTGCGATCCAAG</canonical>
            <polymorphic>AACTTAATTTTTTGAATTTTTTAGCAGTGATATTCAAAAATTTTGTTAGATTTTTTCCAGTTTCACATTATGCTGAAAATGTAAACCTATGACTTGTTTTTTGACCCAGTTTAACCATATACTTGTGTTCCAAATTTTCGAAATTTCGAAACAGAAAACATTCATTTGATTCCTCCCAGGAATAAAAAAAAAGTTCCTTTATGAACAAATCACGTTTTTCAGATTTTCTTATCACTAACCAAACTGTTTTACAAACCTAATAAAAATTCCTCATAATAATGTACTTTTGTGGTTTAACTTATGACGATAATTGAACAAATAAATGTTGTAGTTTCTGAAACTTGAGAAGTTTGGCATTTAATAGAACATAATAATACGTAGGTGAATTCTTACCATACAAATATCACAGTTAGCGTTCGAAATCGGGACGCCCGCTTTCGCTGGGCGACCCATTTTAGGGGACGGGGGACGGTCGTCCTCAGCCCTTTTTTCGGGGACARTACCAAATCACTAACATAGAGTCATAAATGAAATAATTCTTACATTTTTTTGGAAATCATTGTAAAACTAATTTTTTTTTGAAATTCGCATCTTTTGTAGAAATTTGGAAAATCAAAATATCTGTTTCATATTCGTTTTATTTTTGAAAACAACTTTTGAAAAAGATTAACTGTTACGTTTTTTCCAAAATTGCAAGCCAAAAGAAGAGTTTCAGCAAAAAATAATTCTCGGAAAATCCAAAAAAAAAAACATACAATTGTCACAAAAGGGACACAAATGTTTCCAATGGCAGCAAAAAGGTTGAAATTCGAAAAAGGTGTAACTTCATTGTAATCATTTTTTGAAAATTGCCATACATATGAAGCGACGAATCAAAATCAGAATTCACAGAAAATTAAAGTCAACATCTTGAAACAGGTATTTTTGGTAATTGAGAAAAAAAAAGGAATTTCAAATGTTCAGTAAACTCTGGATTAGTACTGGATCAGTGCGATCCAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>478 282 219 21</canonical_bands>
                <polymorphic_bands>697 282 21</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>328 245 173 163 63 28</canonical_bands>
                <polymorphic_bands>328 245 201 163 63</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATACGTAGGTGAATTCTTACCA</pcr_primer_p1>
		<pcr_primer_p2>TTTCCAAATTTCTACAAAAGATG</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AATACGTAGGTGAATTCTTACCATACAAATATCACAGTTAGCGTTCGAAATCGGGACGCCCGCTTTCGCTGGGCGACCCATTTTAGGGGACGGGGGACGGTCGTCCTCAGCCCTTTTTTCGGGGACAGTACCAAATCACTAACATAGAGTCATAAATGAAATAATTCTTACATTTTTTTGGAAATCATTGTAAAACTAATTTTTTTTTGAAATTCGCATCTTTTGTAGAAATTTGGAAA</canonical_amplicon>
		<polymorphic_amplicon>AATACGTAGGTGAATTCTTACCATACAAATATCACAGTTAGCGTTCGAAATCGGGACGCCCGCTTTCGCTGGGCGACCCATTTTAGGGGACGGGGGACGGTCGTCCTCAGCCCTTTTTTCGGGGACARTACCAAATCACTAACATAGAGTCATAAATGAAATAATTCTTACATTTTTTTGGAAATCATTGTAAAACTAATTTTTTTTTGAAATTCGCATCTTTTGTAGAAATTTGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2339</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>253664</contig_pos>
        <strand>+</strand>
        <context>TAAATGTTGT[A/G]GTTTCTGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTACTTTTGTGGTTTAACTTATGACGATAATTGAACAAATAAATGTTGT</left_flank>
        <right_flank>GTTTCTGAAACTTGAGAAGTTTGGCATTTAATAGAACATAATAATACGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAATATAAATAATACGATACAGTAATTTTCAATTTTACAAAGCTCGAATTTCAATAAATGAGAATATTTAATTTTTCCTGTTTTGTAATAATTTGAAAATACAGTTAAAAATTATTCTCGTTTATGTTCTTTCAGATTTATGTCCGACCAAACAATTCATAACTCAAAAACTTAATTTTTTGAATTTTTTAGCAGTGATATTCAAAAATTTTGTTAGATTTTTTCCAGTTTCACATTATGCTGAAAATGTAAACCTATGACTTGTTTTTTGACCCAGTTTAACCATATACTTGTGTTCCAAATTTTCGAAATTTCGAAACAGAAAACATTCATTTGATTCCTCCCAGGAATAAAAAAAAAGTTCCTTTATGAACAAATCACGTTTTTCAGATTTTCTTATCACTAACCAAACTGTTTTACAAACCTAATAAAAATTCCTCATAATAATGTACTTTTGTGGTTTAACTTATGACGATAATTGAACAAATAAATGTTGTAGTTTCTGAAACTTGAGAAGTTTGGCATTTAATAGAACATAATAATACGTAGGTGAATTCTTACCATACAAATATCACAGTTAGCGTTCGAAATCGGGACGCCCGCTTTCGCTGGGCGACCCATTTTAGGGGACGGGGGACGGTCGTCCTCAGCCCTTTTTTCGGGGACAGTACCAAATCACTAACATAGAGTCATAAATGAAATAATTCTTACATTTTTTTGGAAATCATTGTAAAACTAATTTTTTTTTGAAATTCGCATCTTTTGTAGAAATTTGGAAAATCAAAATATCTGTTTCATATTCGTTTTATTTTTGAAAACAACTTTTGAAAAAGATTAACTGTTACGTTTTTTCCAAAATTGCAAGCCAAAAGAAGAGTTTCAGCAAAAAATAATTCTCGGAAAATCCAAAAAAAAAAACATACAATTGTCACAAAAGGGACACAAATGTTTCCAATGGCAGCAAAAAGGTTGAAATTCGAAAAAGGTGTAACTTCATT</canonical>
            <polymorphic>CAAAATATAAATAATACGATACAGTAATTTTCAATTTTACAAAGCTCGAATTTCAATAAATGAGAATATTTAATTTTTCCTGTTTTGTAATAATTTGAAAATACAGTTAAAAATTATTCTCGTTTATGTTCTTTCAGATTTATGTCCGACCAAACAATTCATAACTCAAAAACTTAATTTTTTGAATTTTTTAGCAGTGATATTCAAAAATTTTGTTAGATTTTTTCCAGTTTCACATTATGCTGAAAATGTAAACCTATGACTTGTTTTTTGACCCAGTTTAACCATATACTTGTGTTCCAAATTTTCGAAATTTCGAAACAGAAAACATTCATTTGATTCCTCCCAGGAATAAAAAAAAAGTTCCTTTATGAACAAATCACGTTTTTCAGATTTTCTTATCACTAACCAAACTGTTTTACAAACCTAATAAAAATTCCTCATAATAATGTACTTTTGTGGTTTAACTTATGACGATAATTGAACAAATAAATGTTGTRGTTTCTGAAACTTGAGAAGTTTGGCATTTAATAGAACATAATAATACGTAGGTGAATTCTTACCATACAAATATCACAGTTAGCGTTCGAAATCGGGACGCCCGCTTTCGCTGGGCGACCCATTTTAGGGGACGGGGGACGGTCGTCCTCAGCCCTTTTTTCGGGGACAGTACCAAATCACTAACATAGAGTCATAAATGAAATAATTCTTACATTTTTTTGGAAATCATTGTAAAACTAATTTTTTTTTGAAATTCGCATCTTTTGTAGAAATTTGGAAAATCAAAATATCTGTTTCATATTCGTTTTATTTTTGAAAACAACTTTTGAAAAAGATTAACTGTTACGTTTTTTCCAAAATTGCAAGCCAAAAGAAGAGTTTCAGCAAAAAATAATTCTCGGAAAATCCAAAAAAAAAAACATACAATTGTCACAAAAGGGACACAAATGTTTCCAATGGCAGCAAAAAGGTTGAAATTCGAAAAAGGTGTAACTTCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAGAAAACATTCATTTGATTC</pcr_primer_p1>
		<pcr_primer_p2>TGTATGGTAAGAATTCACCTACG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACAGAAAACATTCATTTGATTCCTCCCAGGAATAAAAAAAAAGTTCCTTTATGAACAAATCACGTTTTTCAGATTTTCTTATCACTAACCAAACTGTTTTACAAACCTAATAAAAATTCCTCATAATAATGTACTTTTGTGGTTTAACTTATGACGATAATTGAACAAATAAATGTTGTAGTTTCTGAAACTTGAGAAGTTTGGCATTTAATAGAACATAATAATACGTAGGTGAATTCTTACCATACA</canonical_amplicon>
		<polymorphic_amplicon>AACAGAAAACATTCATTTGATTCCTCCCAGGAATAAAAAAAAAGTTCCTTTATGAACAAATCACGTTTTTCAGATTTTCTTATCACTAACCAAACTGTTTTACAAACCTAATAAAAATTCCTCATAATAATGTACTTTTGTGGTTTAACTTATGACGATAATTGAACAAATAAATGTTGTRGTTTCTGAAACTTGAGAAGTTTGGCATTTAATAGAACATAATAATACGTAGGTGAATTCTTACCATACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2340</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>253592</contig_pos>
        <strand>+</strand>
        <context>TTTACAAMCC[C/T]AATAAAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCACGTTTTTCAGATTTTCTTATCACTAACCAAACTGTTTTACAAACC</left_flank>
        <right_flank>AATAAAAATTCCTCATAATAATGTACTTTTGTGGTTTAACTTATGACGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGCATATTTAGCAAGTGAGCATTTAGCAAAAGATCATCAAGCTAATGAGTATTTTCCAAAATTCACATCCCAAAATATAAATAATACGATACAGTAATTTTCAATTTTACAAAGCTCGAATTTCAATAAATGAGAATATTTAATTTTTCCTGTTTTGTAATAATTTGAAAATACAGTTAAAAATTATTCTCGTTTATGTTCTTTCAGATTTATGTCCGACCAAACAATTCATAACTCAAAAACTTAATTTTTTGAATTTTTTAGCAGTGATATTCAAAAATTTTGTTAGATTTTTTCCAGTTTCACATTATGCTGAAAATGTAAACCTATGACTTGTTTTTTGACCCAGTTTAACCATATACTTGTGTTCCAAATTTTCGAAATTTCGAAACAGAAAACATTCATTTGATTCCTCCCAGGAATAAAAAAAAAGTTCCTTTATGAACAAATCACGTTTTTCAGATTTTCTTATCACTAACCAAACTGTTTTACAAACCTAATAAAAATTCCTCATAATAATGTACTTTTGTGGTTTAACTTATGACGATAATTGAACAAATAAATGTTGTAGTTTCTGAAACTTGAGAAGTTTGGCATTTAATAGAACATAATAATACGTAGGTGAATTCTTACCATACAAATATCACAGTTAGCGTTCGAAATCGGGACGCCCGCTTTCGCTGGGCGACCCATTTTAGGGGACGGGGGACGGTCGTCCTCAGCCCTTTTTTCGGGGACAGTACCAAATCACTAACATAGAGTCATAAATGAAATAATTCTTACATTTTTTTGGAAATCATTGTAAAACTAATTTTTTTTTGAAATTCGCATCTTTTGTAGAAATTTGGAAAATCAAAATATCTGTTTCATATTCGTTTTATTTTTGAAAACAACTTTTGAAAAAGATTAACTGTTACGTTTTTTCCAAAATTGCAAGCCAAAAGAAGAGTTTCAGCAAAAAATAATTCTCGGAAAATCCAAAAAAAAAAACATACAAT</canonical>
            <polymorphic>TGAGCATATTTAGCAAGTGAGCATTTAGCAAAAGATCATCAAGCTAATGAGTATTTTCCAAAATTCACATCCCAAAATATAAATAATACGATACAGTAATTTTCAATTTTACAAAGCTCGAATTTCAATAAATGAGAATATTTAATTTTTCCTGTTTTGTAATAATTTGAAAATACAGTTAAAAATTATTCTCGTTTATGTTCTTTCAGATTTATGTCCGACCAAACAATTCATAACTCAAAAACTTAATTTTTTGAATTTTTTAGCAGTGATATTCAAAAATTTTGTTAGATTTTTTCCAGTTTCACATTATGCTGAAAATGTAAACCTATGACTTGTTTTTTGACCCAGTTTAACCATATACTTGTGTTCCAAATTTTCGAAATTTCGAAACAGAAAACATTCATTTGATTCCTCCCAGGAATAAAAAAAAAGTTCCTTTATGAACAAATCACGTTTTTCAGATTTTCTTATCACTAACCAAACTGTTTTACAAACCYAATAAAAATTCCTCATAATAATGTACTTTTGTGGTTTAACTTATGACGATAATTGAACAAATAAATGTTGTAGTTTCTGAAACTTGAGAAGTTTGGCATTTAATAGAACATAATAATACGTAGGTGAATTCTTACCATACAAATATCACAGTTAGCGTTCGAAATCGGGACGCCCGCTTTCGCTGGGCGACCCATTTTAGGGGACGGGGGACGGTCGTCCTCAGCCCTTTTTTCGGGGACAGTACCAAATCACTAACATAGAGTCATAAATGAAATAATTCTTACATTTTTTTGGAAATCATTGTAAAACTAATTTTTTTTTGAAATTCGCATCTTTTGTAGAAATTTGGAAAATCAAAATATCTGTTTCATATTCGTTTTATTTTTGAAAACAACTTTTGAAAAAGATTAACTGTTACGTTTTTTCCAAAATTGCAAGCCAAAAGAAGAGTTTCAGCAAAAAATAATTCTCGGAAAATCCAAAAAAAAAAACATACAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAGAAAACATTCATTTGATTC</pcr_primer_p1>
		<pcr_primer_p2>TGTATGGTAAGAATTCACCTACG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACAGAAAACATTCATTTGATTCCTCCCAGGAATAAAAAAAAAGTTCCTTTATGAACAAATCACGTTTTTCAGATTTTCTTATCACTAACCAAACTGTTTTACAAACCTAATAAAAATTCCTCATAATAATGTACTTTTGTGGTTTAACTTATGACGATAATTGAACAAATAAATGTTGTAGTTTCTGAAACTTGAGAAGTTTGGCATTTAATAGAACATAATAATACGTAGGTGAATTCTTACCATACA</canonical_amplicon>
		<polymorphic_amplicon>AACAGAAAACATTCATTTGATTCCTCCCAGGAATAAAAAAAAAGTTCCTTTATGAACAAATCACGTTTTTCAGATTTTCTTATCACTAACCAAACTGTTTTACAAACCYAATAAAAATTCCTCATAATAATGTACTTTTGTGGTTTAACTTATGACGATAATTGAACAAATAAATGTTGTAGTTTCTGAAACTTGAGAAGTTTGGCATTTAATAGAACATAATAATACGTAGGTGAATTCTTACCATACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2341</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>253589</contig_pos>
        <strand>+</strand>
        <context>TGTTTTACAA[A/C]CCYAATAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACAAATCACGTTTTTCAGATTTTCTTATCACTAACCAAACTGTTTTACAA</left_flank>
        <right_flank>CCTAATAAAAATTCCTCATAATAATGTACTTTTGTGGTTTAACTTATGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATGAGCATATTTAGCAAGTGAGCATTTAGCAAAAGATCATCAAGCTAATGAGTATTTTCCAAAATTCACATCCCAAAATATAAATAATACGATACAGTAATTTTCAATTTTACAAAGCTCGAATTTCAATAAATGAGAATATTTAATTTTTCCTGTTTTGTAATAATTTGAAAATACAGTTAAAAATTATTCTCGTTTATGTTCTTTCAGATTTATGTCCGACCAAACAATTCATAACTCAAAAACTTAATTTTTTGAATTTTTTAGCAGTGATATTCAAAAATTTTGTTAGATTTTTTCCAGTTTCACATTATGCTGAAAATGTAAACCTATGACTTGTTTTTTGACCCAGTTTAACCATATACTTGTGTTCCAAATTTTCGAAATTTCGAAACAGAAAACATTCATTTGATTCCTCCCAGGAATAAAAAAAAAGTTCCTTTATGAACAAATCACGTTTTTCAGATTTTCTTATCACTAACCAAACTGTTTTACAAACCTAATAAAAATTCCTCATAATAATGTACTTTTGTGGTTTAACTTATGACGATAATTGAACAAATAAATGTTGTAGTTTCTGAAACTTGAGAAGTTTGGCATTTAATAGAACATAATAATACGTAGGTGAATTCTTACCATACAAATATCACAGTTAGCGTTCGAAATCGGGACGCCCGCTTTCGCTGGGCGACCCATTTTAGGGGACGGGGGACGGTCGTCCTCAGCCCTTTTTTCGGGGACAGTACCAAATCACTAACATAGAGTCATAAATGAAATAATTCTTACATTTTTTTGGAAATCATTGTAAAACTAATTTTTTTTTGAAATTCGCATCTTTTGTAGAAATTTGGAAAATCAAAATATCTGTTTCATATTCGTTTTATTTTTGAAAACAACTTTTGAAAAAGATTAACTGTTACGTTTTTTCCAAAATTGCAAGCCAAAAGAAGAGTTTCAGCAAAAAATAATTCTCGGAAAATCCAAAAAAAAAAACATAC</canonical>
            <polymorphic>TCATGAGCATATTTAGCAAGTGAGCATTTAGCAAAAGATCATCAAGCTAATGAGTATTTTCCAAAATTCACATCCCAAAATATAAATAATACGATACAGTAATTTTCAATTTTACAAAGCTCGAATTTCAATAAATGAGAATATTTAATTTTTCCTGTTTTGTAATAATTTGAAAATACAGTTAAAAATTATTCTCGTTTATGTTCTTTCAGATTTATGTCCGACCAAACAATTCATAACTCAAAAACTTAATTTTTTGAATTTTTTAGCAGTGATATTCAAAAATTTTGTTAGATTTTTTCCAGTTTCACATTATGCTGAAAATGTAAACCTATGACTTGTTTTTTGACCCAGTTTAACCATATACTTGTGTTCCAAATTTTCGAAATTTCGAAACAGAAAACATTCATTTGATTCCTCCCAGGAATAAAAAAAAAGTTCCTTTATGAACAAATCACGTTTTTCAGATTTTCTTATCACTAACCAAACTGTTTTACAAMCCTAATAAAAATTCCTCATAATAATGTACTTTTGTGGTTTAACTTATGACGATAATTGAACAAATAAATGTTGTAGTTTCTGAAACTTGAGAAGTTTGGCATTTAATAGAACATAATAATACGTAGGTGAATTCTTACCATACAAATATCACAGTTAGCGTTCGAAATCGGGACGCCCGCTTTCGCTGGGCGACCCATTTTAGGGGACGGGGGACGGTCGTCCTCAGCCCTTTTTTCGGGGACAGTACCAAATCACTAACATAGAGTCATAAATGAAATAATTCTTACATTTTTTTGGAAATCATTGTAAAACTAATTTTTTTTTGAAATTCGCATCTTTTGTAGAAATTTGGAAAATCAAAATATCTGTTTCATATTCGTTTTATTTTTGAAAACAACTTTTGAAAAAGATTAACTGTTACGTTTTTTCCAAAATTGCAAGCCAAAAGAAGAGTTTCAGCAAAAAATAATTCTCGGAAAATCCAAAAAAAAAAACATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAGAAAACATTCATTTGATTC</pcr_primer_p1>
		<pcr_primer_p2>TGTATGGTAAGAATTCACCTACG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACAGAAAACATTCATTTGATTCCTCCCAGGAATAAAAAAAAAGTTCCTTTATGAACAAATCACGTTTTTCAGATTTTCTTATCACTAACCAAACTGTTTTACAAACCTAATAAAAATTCCTCATAATAATGTACTTTTGTGGTTTAACTTATGACGATAATTGAACAAATAAATGTTGTAGTTTCTGAAACTTGAGAAGTTTGGCATTTAATAGAACATAATAATACGTAGGTGAATTCTTACCATACA</canonical_amplicon>
		<polymorphic_amplicon>AACAGAAAACATTCATTTGATTCCTCCCAGGAATAAAAAAAAAGTTCCTTTATGAACAAATCACGTTTTTCAGATTTTCTTATCACTAACCAAACTGTTTTACAAMCCTAATAAAAATTCCTCATAATAATGTACTTTTGTGGTTTAACTTATGACGATAATTGAACAAATAAATGTTGTAGTTTCTGAAACTTGAGAAGTTTGGCATTTAATAGAACATAATAATACGTAGGTGAATTCTTACCATACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2350</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>275542</contig_pos>
        <strand>+</strand>
        <context>GARWTTTTTT[A/T]TGTTGCTTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGTTCCTACGCATAGAATACGATGGCTCATCGATTGTGAGATTTTTTTT</left_flank>
        <right_flank>TGTTGCTTCCAATTTTTTTAACCGTTTCAGAAGCACATTTGAAGTTTATG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGACTTTGTATCCAACCAATCAAGCAAGTATAACTCTTACATATTTCAATACAAATTAAAAAATTGAAAAAAAACGATCCTATCAATTTCAGGAAAGAGACGGTTGTAAACCCGAAATGAGGCATCTCCAGCGACCACGTCAACCAATGGAAGTCAGCTCGTGGAATCGATTTCAACTCGGATTCCAAGCTTCATATACGAGCCTGACGAGGATCTGACATTTGACAATTGGTACAACAGATATGGAGACGTCATCACCAAGGACGGATCAACTCTCACCGATGAGGCCAAAGCAAGGTTAGTTTTATCTAAACTCAACACAAAAGAGTATTCTCACTTTGCAAATCGTATCCTCCCGGAAGCTCCAAACTCCCTAAAGTTCGAGGACCTCATTCCGAAGCTCAAGGGGACATTCAAGTCGACCTCATCGATCTTCCGGATGCGTCAGGAGTTCCTACGCATAGAATACGATGGCTCATCGATTGTGAGATTTTTTTTTTGTTGCTTCCAATTTTTTTAACCGTTTCAGAAGCACATTTGAAGTTTATGCGTACAAGTACGAAAAATAAAATGAATTCAGGATAAAGTTGTTACAGTACATCTGAAGTATTCCAAAACAGTTAATTTTGAAGCCAACATAGTCGGAACAGCTTTTGGTGGCACTCTGAAGATCATATTTCATGAGTTTGAAACGGTGAACTGCTTTTTTCAAAAACATCATAAAGCTTGTATTAGAAGAGCTCTAGATTTTTTATCCATTCATCTTGGTTCCTGTAAAAAAAACTTTAAAAAGTGACCGTATTGCCTATACGGTTGAAAACTTTGAATGAAAATGACAAAAAAGCTACAAATTTATGTTCCAAAAATCTCATATAAATCATGTGTAATTTGAATTTTAAAAAATTTCTAAATTTCCAGTCAGAACCTCGAGCCAGAATTACAAATTCATTTCTCATATAAATCAGGGTTTTCGGTTTATATATGCTCCATTGCTCTATT</canonical>
            <polymorphic>TTGACTTTGTATCCAACCAATCAAGCAAGTATAACTCTTACATATTTCAATACAAATTAAAAAATTGAAAAAAAACGATCCTATCAATTTCAGGAAAGAGACGGTTGTAAACCCGAAATGAGGCATCTCCAGCGACCACGTCAACCAATGGAAGTCAGCTCGTGGAATCGATTTCAACTCGGATTCCAAGCTTCATATACGAGCCTGACGAGGATCTGACATTTGACAATTGGTACAACAGATATGGAGACGTCATCACCAAGGACGGATCAACTCTCACCGATGAGGCCAAAGCAAGGTTAGTTTTATCTAAACTCAACACAAAAGAGTATTCTCACTTTGCAAATCGTATCCTCCCGGAAGCTCCAAACTCCCTAAAGTTCGAGGACCTCATTCCGAAGCTCAAGGGGACATTCAAGTCGACCTCATCGATCTTCCGGATGCGTCAGGAGTTCCTACGCATAGAATACGATGGCTCATCGATTGTGAGATTTTTTTTWTGTTGCTTCCAATTTTTTTAACCGTTTCAGAAGCACATTTGAAGTTTATGCGTACAAGTACGAAAAATAAAATGAATTCAGGATAAAGTTGTTACAGTACATCTGAAGTATTCCAAAACAGTTAATTTTGAAGCCAACATAGTCGGAACAGCTTTTGGTGGCACTCTGAAGATCATATTTCATGAGTTTGAAACGGTGAACTGCTTTTTTCAAAAACATCATAAAGCTTGTATTAGAAGAGCTCTAGATTTTTTATCCATTCATCTTGGTTCCTGTAAAAAAAACTTTAAAAAGTGACCGTATTGCCTATACGGTTGAAAACTTTGAATGAAAATGACAAAAAAGCTACAAATTTATGTTCCAAAAATCTCATATAAATCATGTGTAATTTGAATTTTAAAAAATTTCTAAATTTCCAGTCAGAACCTCGAGCCAGAATTACAAATTCATTTCTCATATAAATCAGGGTTTTCGGTTTATATATGCTCCATTGCTCTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGAAAGAGACGGTTGTAA</pcr_primer_p1>
		<pcr_primer_p2>AATTCATTTTATTTTTCGTACTTGT</pcr_primer_p2>
		<pcr_amplicon_size>488</pcr_amplicon_size>
		<canonical_amplicon>CAGGAAAGAGACGGTTGTAAACCCGAAATGAGGCATCTCCAGCGACCACGTCAACCAATGGAAGTCAGCTCGTGGAATCGATTTCAACTCGGATTCCAAGCTTCATATACGAGCCTGACGAGGATCTGACATTTGACAATTGGTACAACAGATATGGAGACGTCATCACCAAGGACGGATCAACTCTCACCGATGAGGCCAAAGCAAGGTTAGTTTTATCTAAACTCAACACAAAAGAGTATTCTCACTTTGCAAATCGTATCCTCCCGGAAGCTCCAAACTCCCTAAAGTTCGAGGACCTCATTCCGAAGCTCAAGGGGACATTCAAGTCGACCTCATCGATCTTCCGGATGCGTCAGGAGTTCCTACGCATAGAATACGATGGCTCATCGATTGTGAGATTTTTTTTTTGTTGCTTCCAATTTTTTTAACCGTTTCAGAAGCACATTTGAAGTTTATGCGTACAAGTACGAAAAATAAAATGAATT</canonical_amplicon>
		<polymorphic_amplicon>CAGGAAAGAGACGGTTGTAAACCCGAAATGAGGCATCTCCAGCGACCACGTCAACCAATGGAAGTCAGCTCGTGGAATCGATTTCAACTCGGATTCCAAGCTTCATATACGAGCCTGACGAGGATCTGACATTTGACAATTGGTACAACAGATATGGAGACGTCATCACCAAGGACGGATCAACTCTCACCGATGAGGCCAAAGCAAGGTTAGTTTTATCTAAACTCAACACAAAAGAGTATTCTCACTTTGCAAATCGTATCCTCCCGGAAGCTCCAAACTCCCTAAAGTTCGAGGACCTCATTCCGAAGCTCAAGGGGACATTCAAGTCGACCTCATCGATCTTCCGGATGCGTCAGGAGTTCCTACGCATAGAATACGATGGCTCATCGATTGTGAGATTTTTTTTWTGTTGCTTCCAATTTTTTTAACCGTTTCAGAAGCACATTTGAAGTTTATGCGTACAAGTACGAAAAATAAAATGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2354</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>363436</contig_pos>
        <strand>+</strand>
        <context>AATTTTGSAA[C/T]AAGCTTATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGAATATTAGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAA</left_flank>
        <right_flank>AAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTACAATAATTGAACATTCACCCAAAATTTTCAATTATTTTTTCAAAATGTGAATTTTCAAATTTCCGTCTGATCTTACCTCCCAATGGTACTCAACAAGTTTGACTGGAACTCCTTTTTGCACGGACCATCACATCTGGCCGTGACAGGTGTCGGTGGACCGCCTGGATTTTCGAATTGTTATGATTTTTATGAAATTGCTAAAAAAATTTCCGAAAAATTCTCGGTTCCCAAAACTCAAATTATGTTAGCCGATTAAATTTAAACTAGTTGTTATATCATGAACTTTAAAAATTCAATTTTTTTCAAAAAAGTTTTCCTCACCCAAAGAAAGACTAGAAGAGATCTTTCGAGCCAGCTGAGAAGCTTCGCGAATTTTCGAAAACTTGGAATCACAATCCGAATCTCCATCTTCCTCCCAAGAGATAGCGTAGGTGTAGGTGCATCTGAATATTAGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATGAAGATTTTGAGAT</canonical>
            <polymorphic>AAACTACAATAATTGAACATTCACCCAAAATTTTCAATTATTTTTTCAAAATGTGAATTTTCAAATTTCCGTCTGATCTTACCTCCCAATGGTACTCAACAAGTTTGACTGGAACTCCTTTTTGCACGGACCATCACATCTGGCCGTGACAGGTGTCGGTGGACCGCCTGGATTTTCGAATTGTTATGATTTTTATGAAATTGCTAAAAAAATTTCCGAAAAATTCTCGGTTCCCAAAACTCAAATTATGTTAGCCGATTAAATTTAAACTAGTTGTTATATCATGAACTTTAAAAATTCAATTTTTTTCAAAAAAGTTTTCCTCACCCAAAGAAAGACTAGAAGAGATCTTTCGAGCCAGCTGAGAAGCTTCGCGAATTTTCGAAAACTTGGAATCACAATCCGAATCTCCATCTTCCTCCCAAGAGATAGCGTAGGTGTAGGTGCATCTGAATATTAGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAAYAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATGAAGATTTTGAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCAAAGAAAGACTAGAAGAGAT</pcr_primer_p1>
		<pcr_primer_p2>GTTTTCTGATTTTTCCGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CCCAAAGAAAGACTAGAAGAGATCTTTCGAGCCAGCTGAGAAGCTTCGCGAATTTTCGAAAACTTGGAATCACAATCCGAATCTCCATCTTCCTCCCAAGAGATAGCGTAGGTGTAGGTGCATCTGAATATTAGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAAC</canonical_amplicon>
		<polymorphic_amplicon>CCCAAAGAAAGACTAGAAGAGATCTTTCGAGCCAGCTGAGAAGCTTCGCGAATTTTCGAAAACTTGGAATCACAATCCGAATCTCCATCTTCCTCCCAAGAGATAGCGTAGGTGTAGGTGCATCTGAATATTAGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAAYAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2355</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>363463</contig_pos>
        <strand>+</strand>
        <context>GAAATCTCCA[A/C]CTYTCTTGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCA</left_flank>
        <right_flank>CTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTTCAATTATTTTTTCAAAATGTGAATTTTCAAATTTCCGTCTGATCTTACCTCCCAATGGTACTCAACAAGTTTGACTGGAACTCCTTTTTGCACGGACCATCACATCTGGCCGTGACAGGTGTCGGTGGACCGCCTGGATTTTCGAATTGTTATGATTTTTATGAAATTGCTAAAAAAATTTCCGAAAAATTCTCGGTTCCCAAAACTCAAATTATGTTAGCCGATTAAATTTAAACTAGTTGTTATATCATGAACTTTAAAAATTCAATTTTTTTCAAAAAAGTTTTCCTCACCCAAAGAAAGACTAGAAGAGATCTTTCGAGCCAGCTGAGAAGCTTCGCGAATTTTCGAAAACTTGGAATCACAATCCGAATCTCCATCTTCCTCCCAAGAGATAGCGTAGGTGTAGGTGCATCTGAATATTAGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATGAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGT</canonical>
            <polymorphic>AAATTTTCAATTATTTTTTCAAAATGTGAATTTTCAAATTTCCGTCTGATCTTACCTCCCAATGGTACTCAACAAGTTTGACTGGAACTCCTTTTTGCACGGACCATCACATCTGGCCGTGACAGGTGTCGGTGGACCGCCTGGATTTTCGAATTGTTATGATTTTTATGAAATTGCTAAAAAAATTTCCGAAAAATTCTCGGTTCCCAAAACTCAAATTATGTTAGCCGATTAAATTTAAACTAGTTGTTATATCATGAACTTTAAAAATTCAATTTTTTTCAAAAAAGTTTTCCTCACCCAAAGAAAGACTAGAAGAGATCTTTCGAGCCAGCTGAGAAGCTTCGCGAATTTTCGAAAACTTGGAATCACAATCCGAATCTCCATCTTCCTCCCAAGAGATAGCGTAGGTGTAGGTGCATCTGAATATTAGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCAMCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATGAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>210 165 141 88 72 71 64 42 40 28 16 12 11 10 7 6 6 5 4 2</canonical_bands>
                <polymorphic_bands>210 165 141 88 75 72 71 42 40 28 16 12 10 7 6 6 5 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTGAGCTACAGTAATCCAACAT</pcr_primer_p1>
		<pcr_primer_p2>AATGCTGTTATCCATAGAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATT</canonical_amplicon>
		<polymorphic_amplicon>AGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCAMCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2356</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>363466</contig_pos>
        <strand>+</strand>
        <context>ATCTCCAMCT[C/T]TCTTGCACTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCT</left_flank>
        <right_flank>TCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCAATTATTTTTTCAAAATGTGAATTTTCAAATTTCCGTCTGATCTTACCTCCCAATGGTACTCAACAAGTTTGACTGGAACTCCTTTTTGCACGGACCATCACATCTGGCCGTGACAGGTGTCGGTGGACCGCCTGGATTTTCGAATTGTTATGATTTTTATGAAATTGCTAAAAAAATTTCCGAAAAATTCTCGGTTCCCAAAACTCAAATTATGTTAGCCGATTAAATTTAAACTAGTTGTTATATCATGAACTTTAAAAATTCAATTTTTTTCAAAAAAGTTTTCCTCACCCAAAGAAAGACTAGAAGAGATCTTTCGAGCCAGCTGAGAAGCTTCGCGAATTTTCGAAAACTTGGAATCACAATCCGAATCTCCATCTTCCTCCCAAGAGATAGCGTAGGTGTAGGTGCATCTGAATATTAGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATGAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGTCTT</canonical>
            <polymorphic>TTTTCAATTATTTTTTCAAAATGTGAATTTTCAAATTTCCGTCTGATCTTACCTCCCAATGGTACTCAACAAGTTTGACTGGAACTCCTTTTTGCACGGACCATCACATCTGGCCGTGACAGGTGTCGGTGGACCGCCTGGATTTTCGAATTGTTATGATTTTTATGAAATTGCTAAAAAAATTTCCGAAAAATTCTCGGTTCCCAAAACTCAAATTATGTTAGCCGATTAAATTTAAACTAGTTGTTATATCATGAACTTTAAAAATTCAATTTTTTTCAAAAAAGTTTTCCTCACCCAAAGAAAGACTAGAAGAGATCTTTCGAGCCAGCTGAGAAGCTTCGCGAATTTTCGAAAACTTGGAATCACAATCCGAATCTCCATCTTCCTCCCAAGAGATAGCGTAGGTGTAGGTGCATCTGAATATTAGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTYTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATGAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGAGCTACAGTAATCCAACAT</pcr_primer_p1>
		<pcr_primer_p2>AATGCTGTTATCCATAGAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATT</canonical_amplicon>
		<polymorphic_amplicon>AGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTYTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2358</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>363503</contig_pos>
        <strand></strand>
        <context>AGAAAACAAA[C/A]AAATATGCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAA</left_flank>
        <right_flank>AAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCGTCTGATCTTACCTCCCAATGGTACTCAACAAGTTTGACTGGAACTCCTTTTTGCACGGACCATCACATCTGGCCGTGACAGGTGTCGGTGGACCGCCTGGATTTTCGAATTGTTATGATTTTTATGAAATTGCTAAAAAAATTTCCGAAAAATTCTCGGTTCCCAAAACTCAAATTATGTTAGCCGATTAAATTTAAACTAGTTGTTATATCATGAACTTTAAAAATTCAATTTTTTTCAAAAAAGTTTTCCTCACCCAAAGAAAGACTAGAAGAGATCTTTCGAGCCAGCTGAGAAGCTTCGCGAATTTTCGAAAACTTGGAATCACAATCCGAATCTCCATCTTCCTCCCAAGAGATAGCGTAGGTGTAGGTGCATCTGAATATTAGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATGAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGTCTTCGAAAAGTGTCTCGATTTGACGAATTGAGAACGATTT</canonical>
            <polymorphic>TCCGTCTGATCTTACCTCCCAATGGTACTCAACAAGTTTGACTGGAACTCCTTTTTGCACGGACCATCACATCTGGCCGTGACAGGTGTCGGTGGACCGCCTGGATTTTCGAATTGTTATGATTTTTATGAAATTGCTAAAAAAATTTCCGAAAAATTCTCGGTTCCCAAAACTCAAATTATGTTAGCCGATTAAATTTAAACTAGTTGTTATATCATGAACTTTAAAAATTCAATTTTTTTCAAAAAAGTTTTCCTCACCCAAAGAAAGACTAGAAGAGATCTTTCGAGCCAGCTGAGAAGCTTCGCGAATTTTCGAAAACTTGGAATCACAATCCGAATCTCCATCTTCCTCCCAAGAGATAGCGTAGGTGTAGGTGCATCTGAATATTAGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAAMAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATGAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGTCTTCGAAAAGTGTCTCGATTTGACGAATTGAGAACGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGAGCTACAGTAATCCAACAT</pcr_primer_p1>
		<pcr_primer_p2>AATGCTGTTATCCATAGAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATT</canonical_amplicon>
		<polymorphic_amplicon>AGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAAMAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2359</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>363577</contig_pos>
        <strand>+</strand>
        <context>AAATCGACTA[A/C]AGTAATAGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTA</left_flank>
        <right_flank>AGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCCGTGACAGGTGTCGGTGGACCGCCTGGATTTTCGAATTGTTATGATTTTTATGAAATTGCTAAAAAAATTTCCGAAAAATTCTCGGTTCCCAAAACTCAAATTATGTTAGCCGATTAAATTTAAACTAGTTGTTATATCATGAACTTTAAAAATTCAATTTTTTTCAAAAAAGTTTTCCTCACCCAAAGAAAGACTAGAAGAGATCTTTCGAGCCAGCTGAGAAGCTTCGCGAATTTTCGAAAACTTGGAATCACAATCCGAATCTCCATCTTCCTCCCAAGAGATAGCGTAGGTGTAGGTGCATCTGAATATTAGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATGAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGTCTTCGAAAAGTGTCTCGATTTGACGAATTGAGAACGATTTTTAATTGGTTGGAAGTCTTTTGAAAATAGTTGGCAAGGCGTTTGAATTCAAAAAAAAAGAAGAATCTACGAAGA</canonical>
            <polymorphic>GGCCGTGACAGGTGTCGGTGGACCGCCTGGATTTTCGAATTGTTATGATTTTTATGAAATTGCTAAAAAAATTTCCGAAAAATTCTCGGTTCCCAAAACTCAAATTATGTTAGCCGATTAAATTTAAACTAGTTGTTATATCATGAACTTTAAAAATTCAATTTTTTTCAAAAAAGTTTTCCTCACCCAAAGAAAGACTAGAAGAGATCTTTCGAGCCAGCTGAGAAGCTTCGCGAATTTTCGAAAACTTGGAATCACAATCCGAATCTCCATCTTCCTCCCAAGAGATAGCGTAGGTGTAGGTGCATCTGAATATTAGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAMAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATGAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGTCTTCGAAAAGTGTCTCGATTTGACGAATTGAGAACGATTTTTAATTGGTTGGAAGTCTTTTGAAAATAGTTGGCAAGGCGTTTGAATTCAAAAAAAAAGAAGAATCTACGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGAGCTACAGTAATCCAACAT</pcr_primer_p1>
		<pcr_primer_p2>AATGCTGTTATCCATAGAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATT</canonical_amplicon>
		<polymorphic_amplicon>AGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAMAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2360</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>363593</contig_pos>
        <strand>+</strand>
        <context>TAGTAAAAAA[C/T]GCGATTGACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAA</left_flank>
        <right_flank>GCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTGGACCGCCTGGATTTTCGAATTGTTATGATTTTTATGAAATTGCTAAAAAAATTTCCGAAAAATTCTCGGTTCCCAAAACTCAAATTATGTTAGCCGATTAAATTTAAACTAGTTGTTATATCATGAACTTTAAAAATTCAATTTTTTTCAAAAAAGTTTTCCTCACCCAAAGAAAGACTAGAAGAGATCTTTCGAGCCAGCTGAGAAGCTTCGCGAATTTTCGAAAACTTGGAATCACAATCCGAATCTCCATCTTCCTCCCAAGAGATAGCGTAGGTGTAGGTGCATCTGAATATTAGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATGAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGTCTTCGAAAAGTGTCTCGATTTGACGAATTGAGAACGATTTTTAATTGGTTGGAAGTCTTTTGAAAATAGTTGGCAAGGCGTTTGAATTCAAAAAAAAAGAAGAATCTACGAAGATAGAAATTAGGAGAAG</canonical>
            <polymorphic>GGTGGACCGCCTGGATTTTCGAATTGTTATGATTTTTATGAAATTGCTAAAAAAATTTCCGAAAAATTCTCGGTTCCCAAAACTCAAATTATGTTAGCCGATTAAATTTAAACTAGTTGTTATATCATGAACTTTAAAAATTCAATTTTTTTCAAAAAAGTTTTCCTCACCCAAAGAAAGACTAGAAGAGATCTTTCGAGCCAGCTGAGAAGCTTCGCGAATTTTCGAAAACTTGGAATCACAATCCGAATCTCCATCTTCCTCCCAAGAGATAGCGTAGGTGTAGGTGCATCTGAATATTAGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAAYGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATGAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGTCTTCGAAAAGTGTCTCGATTTGACGAATTGAGAACGATTTTTAATTGGTTGGAAGTCTTTTGAAAATAGTTGGCAAGGCGTTTGAATTCAAAAAAAAAGAAGAATCTACGAAGATAGAAATTAGGAGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 284 217</canonical_bands>
                <polymorphic_bands>783 217</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCTTATTTATTTTTGAAATCTCC</pcr_primer_p1>
		<pcr_primer_p2>TGTAGTGATAATGGGGTTACTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACA</canonical_amplicon>
		<polymorphic_amplicon>AGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAAYGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2361</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>363617</contig_pos>
        <strand>+</strand>
        <context>TAGRAAAAAA[A/G]CATCAATTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAA</left_flank>
        <right_flank>CATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTATGATTTTTATGAAATTGCTAAAAAAATTTCCGAAAAATTCTCGGTTCCCAAAACTCAAATTATGTTAGCCGATTAAATTTAAACTAGTTGTTATATCATGAACTTTAAAAATTCAATTTTTTTCAAAAAAGTTTTCCTCACCCAAAGAAAGACTAGAAGAGATCTTTCGAGCCAGCTGAGAAGCTTCGCGAATTTTCGAAAACTTGGAATCACAATCCGAATCTCCATCTTCCTCCCAAGAGATAGCGTAGGTGTAGGTGCATCTGAATATTAGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATGAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGTCTTCGAAAAGTGTCTCGATTTGACGAATTGAGAACGATTTTTAATTGGTTGGAAGTCTTTTGAAAATAGTTGGCAAGGCGTTTGAATTCAAAAAAAAAGAAGAATCTACGAAGATAGAAATTAGGAGAAGAGACAAAAAATGAATTTCACGTGA</canonical>
            <polymorphic>TGTTATGATTTTTATGAAATTGCTAAAAAAATTTCCGAAAAATTCTCGGTTCCCAAAACTCAAATTATGTTAGCCGATTAAATTTAAACTAGTTGTTATATCATGAACTTTAAAAATTCAATTTTTTTCAAAAAAGTTTTCCTCACCCAAAGAAAGACTAGAAGAGATCTTTCGAGCCAGCTGAGAAGCTTCGCGAATTTTCGAAAACTTGGAATCACAATCCGAATCTCCATCTTCCTCCCAAGAGATAGCGTAGGTGTAGGTGCATCTGAATATTAGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAARCATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATGAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGTCTTCGAAAAGTGTCTCGATTTGACGAATTGAGAACGATTTTTAATTGGTTGGAAGTCTTTTGAAAATAGTTGGCAAGGCGTTTGAATTCAAAAAAAAAGAAGAATCTACGAAGATAGAAATTAGGAGAAGAGACAAAAAATGAATTTCACGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTTATTTATTTTTGAAATCTCC</pcr_primer_p1>
		<pcr_primer_p2>TGTAGTGATAATGGGGTTACTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACA</canonical_amplicon>
		<polymorphic_amplicon>AGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAARCATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2362</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>363738</contig_pos>
        <strand>+</strand>
        <context>CTGCACTCTT[C/T]GGATYTTTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTT</left_flank>
        <right_flank>GGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTCAAAAAAGTTTTCCTCACCCAAAGAAAGACTAGAAGAGATCTTTCGAGCCAGCTGAGAAGCTTCGCGAATTTTCGAAAACTTGGAATCACAATCCGAATCTCCATCTTCCTCCCAAGAGATAGCGTAGGTGTAGGTGCATCTGAATATTAGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATGAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGTCTTCGAAAAGTGTCTCGATTTGACGAATTGAGAACGATTTTTAATTGGTTGGAAGTCTTTTGAAAATAGTTGGCAAGGCGTTTGAATTCAAAAAAAAAGAAGAATCTACGAAGATAGAAATTAGGAGAAGAGACAAAAAATGAATTTCACGTGAATTTTTTTACAGTTTCGAGCAATTTTTAAAAGCGACCTTTTTTGACACTATTATCTTTACAGCTGATTAGACTTAAAATTAGACTAATAAATTATGATTCTCAAAAATTTAATAATTGAAG</canonical>
            <polymorphic>TTTTTTTCAAAAAAGTTTTCCTCACCCAAAGAAAGACTAGAAGAGATCTTTCGAGCCAGCTGAGAAGCTTCGCGAATTTTCGAAAACTTGGAATCACAATCCGAATCTCCATCTTCCTCCCAAGAGATAGCGTAGGTGTAGGTGCATCTGAATATTAGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTYGGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATGAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGTCTTCGAAAAGTGTCTCGATTTGACGAATTGAGAACGATTTTTAATTGGTTGGAAGTCTTTTGAAAATAGTTGGCAAGGCGTTTGAATTCAAAAAAAAAGAAGAATCTACGAAGATAGAAATTAGGAGAAGAGACAAAAAATGAATTTCACGTGAATTTTTTTACAGTTTCGAGCAATTTTTAAAAGCGACCTTTTTTGACACTATTATCTTTACAGCTGATTAGACTTAAAATTAGACTAATAAATTATGATTCTCAAAAATTTAATAATTGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCAATTTCTATGGATAACAGC</pcr_primer_p1>
		<pcr_primer_p2>CAACTCCTCAGGATTCTTCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTG</canonical_amplicon>
		<polymorphic_amplicon>CATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTYGGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2363</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>363743</contig_pos>
        <strand>+</strand>
        <context>CTCTTYGGAT[C/T]TTTACAAACG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGAT</left_flank>
        <right_flank>TTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAAAAAAGTTTTCCTCACCCAAAGAAAGACTAGAAGAGATCTTTCGAGCCAGCTGAGAAGCTTCGCGAATTTTCGAAAACTTGGAATCACAATCCGAATCTCCATCTTCCTCCCAAGAGATAGCGTAGGTGTAGGTGCATCTGAATATTAGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATGAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGTCTTCGAAAAGTGTCTCGATTTGACGAATTGAGAACGATTTTTAATTGGTTGGAAGTCTTTTGAAAATAGTTGGCAAGGCGTTTGAATTCAAAAAAAAAGAAGAATCTACGAAGATAGAAATTAGGAGAAGAGACAAAAAATGAATTTCACGTGAATTTTTTTACAGTTTCGAGCAATTTTTAAAAGCGACCTTTTTTGACACTATTATCTTTACAGCTGATTAGACTTAAAATTAGACTAATAAATTATGATTCTCAAAAATTTAATAATTGAAGGAAGA</canonical>
            <polymorphic>TTCAAAAAAGTTTTCCTCACCCAAAGAAAGACTAGAAGAGATCTTTCGAGCCAGCTGAGAAGCTTCGCGAATTTTCGAAAACTTGGAATCACAATCCGAATCTCCATCTTCCTCCCAAGAGATAGCGTAGGTGTAGGTGCATCTGAATATTAGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGATYTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATGAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGTCTTCGAAAAGTGTCTCGATTTGACGAATTGAGAACGATTTTTAATTGGTTGGAAGTCTTTTGAAAATAGTTGGCAAGGCGTTTGAATTCAAAAAAAAAGAAGAATCTACGAAGATAGAAATTAGGAGAAGAGACAAAAAATGAATTTCACGTGAATTTTTTTACAGTTTCGAGCAATTTTTAAAAGCGACCTTTTTTGACACTATTATCTTTACAGCTGATTAGACTTAAAATTAGACTAATAAATTATGATTCTCAAAAATTTAATAATTGAAGGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCAATTTCTATGGATAACAGC</pcr_primer_p1>
		<pcr_primer_p2>CAACTCCTCAGGATTCTTCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTG</canonical_amplicon>
		<polymorphic_amplicon>CATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGATYTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2364</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>363903</contig_pos>
        <strand>+</strand>
        <context>GACTCAAATT[A/G]TCCAAAGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATT</left_flank>
        <right_flank>TCCAAAGAAGCGGCGGCATGAAGATTTTGAGATTCGAAATCGGTCATTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATGAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGTCTTCGAAAAGTGTCTCGATTTGACGAATTGAGAACGATTTTTAATTGGTTGGAAGTCTTTTGAAAATAGTTGGCAAGGCGTTTGAATTCAAAAAAAAAGAAGAATCTACGAAGATAGAAATTAGGAGAAGAGACAAAAAATGAATTTCACGTGAATTTTTTTACAGTTTCGAGCAATTTTTAAAAGCGACCTTTTTTGACACTATTATCTTTACAGCTGATTAGACTTAAAATTAGACTAATAAATTATGATTCTCAAAAATTTAATAATTGAAGGAAGATTTTTCAATATTTTATGTTTCAAATTTAAGACTTCTCACAGTTTTTGAGTTATTTCTCAATGATTAAACTTCATTTCTGGGGTTTTCTTCCAGTTTTAGTTTCCTAAAGACCAACAGAAAAAAATTAAGACACGTTCTCTGTAGAACTCCACTTCAAGCC</canonical>
            <polymorphic>CAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTRTCCAAAGAAGCGGCGGCATGAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGTCTTCGAAAAGTGTCTCGATTTGACGAATTGAGAACGATTTTTAATTGGTTGGAAGTCTTTTGAAAATAGTTGGCAAGGCGTTTGAATTCAAAAAAAAAGAAGAATCTACGAAGATAGAAATTAGGAGAAGAGACAAAAAATGAATTTCACGTGAATTTTTTTACAGTTTCGAGCAATTTTTAAAAGCGACCTTTTTTGACACTATTATCTTTACAGCTGATTAGACTTAAAATTAGACTAATAAATTATGATTCTCAAAAATTTAATAATTGAAGGAAGATTTTTCAATATTTTATGTTTCAAATTTAAGACTTCTCACAGTTTTTGAGTTATTTCTCAATGATTAAACTTCATTTCTGGGGTTTTCTTCCAGTTTTAGTTTCCTAAAGACCAACAGAAAAAAATTAAGACACGTTCTCTGTAGAACTCCACTTCAAGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATTGAAATGATTCCTCCT</pcr_primer_p1>
		<pcr_primer_p2>AGACTTCCAACCAATTAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATGAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGTCTTCGAAAAGTGTCTCGATTTGACGAATTGAGAACGATTTTTAATTGGTTGGAAGTCT</canonical_amplicon>
		<polymorphic_amplicon>ATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTRTCCAAAGAAGCGGCGGCATGAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGTCTTCGAAAAGTGTCTCGATTTGACGAATTGAGAACGATTTTTAATTGGTTGGAAGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2365</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>363923</contig_pos>
        <strand>+</strand>
        <context>GCGGCGGCAT[A/G]AAGATTTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCAT</left_flank>
        <right_flank>AAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGTCTTCGAAAAG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATGAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGTCTTCGAAAAGTGTCTCGATTTGACGAATTGAGAACGATTTTTAATTGGTTGGAAGTCTTTTGAAAATAGTTGGCAAGGCGTTTGAATTCAAAAAAAAAGAAGAATCTACGAAGATAGAAATTAGGAGAAGAGACAAAAAATGAATTTCACGTGAATTTTTTTACAGTTTCGAGCAATTTTTAAAAGCGACCTTTTTTGACACTATTATCTTTACAGCTGATTAGACTTAAAATTAGACTAATAAATTATGATTCTCAAAAATTTAATAATTGAAGGAAGATTTTTCAATATTTTATGTTTCAAATTTAAGACTTCTCACAGTTTTTGAGTTATTTCTCAATGATTAAACTTCATTTCTGGGGTTTTCTTCCAGTTTTAGTTTCCTAAAGACCAACAGAAAAAAATTAAGACACGTTCTCTGTAGAACTCCACTTCAAGCCTATTGTTCACTACAAAAATA</canonical>
            <polymorphic>TTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATRAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGTCTTCGAAAAGTGTCTCGATTTGACGAATTGAGAACGATTTTTAATTGGTTGGAAGTCTTTTGAAAATAGTTGGCAAGGCGTTTGAATTCAAAAAAAAAGAAGAATCTACGAAGATAGAAATTAGGAGAAGAGACAAAAAATGAATTTCACGTGAATTTTTTTACAGTTTCGAGCAATTTTTAAAAGCGACCTTTTTTGACACTATTATCTTTACAGCTGATTAGACTTAAAATTAGACTAATAAATTATGATTCTCAAAAATTTAATAATTGAAGGAAGATTTTTCAATATTTTATGTTTCAAATTTAAGACTTCTCACAGTTTTTGAGTTATTTCTCAATGATTAAACTTCATTTCTGGGGTTTTCTTCCAGTTTTAGTTTCCTAAAGACCAACAGAAAAAAATTAAGACACGTTCTCTGTAGAACTCCACTTCAAGCCTATTGTTCACTACAAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGATTGAAATGATTCCTCCT</pcr_primer_p1>
		<pcr_primer_p2>AGACTTCCAACCAATTAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATGAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGTCTTCGAAAAGTGTCTCGATTTGACGAATTGAGAACGATTTTTAATTGGTTGGAAGTCT</canonical_amplicon>
		<polymorphic_amplicon>ATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATRAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGTCTTCGAAAAGTGTCTCGATTTGACGAATTGAGAACGATTTTTAATTGGTTGGAAGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2366</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>364667</contig_pos>
        <strand>+</strand>
        <context>TCAAAATTTT[A/G]ATTTTCAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCATAATCAAACGTTTACCCAAAATTTTCAGTAATAAAGTCAAAATTTT</left_flank>
        <right_flank>ATTTTCAACATTGGAAAGAACTACAGTAATCTGAACATTGGAAAGAACTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATCTTTACAGCTGATTAGACTTAAAATTAGACTAATAAATTATGATTCTCAAAAATTTAATAATTGAAGGAAGATTTTTCAATATTTTATGTTTCAAATTTAAGACTTCTCACAGTTTTTGAGTTATTTCTCAATGATTAAACTTCATTTCTGGGGTTTTCTTCCAGTTTTAGTTTCCTAAAGACCAACAGAAAAAAATTAAGACACGTTCTCTGTAGAACTCCACTTCAAGCCTATTGTTCACTACAAAAATATTCAAACTTGTTTTTCGGAGTTGATGTTATATGTATCTTTTTGGAAATAATGTTAAAATTGTACACGACGACAGATTTTCAGTCATTTTTGTCGAAATTAGAACAAAAATCAAAATTTCCAGCAAGTACAAACTATTAGGTTTCCGCAAGATAATATGAACTGAATTGAAGTTCCGGCAGCTGTTTCATAATTCTCATAATCAAACGTTTACCCAAAATTTTCAGTAATAAAGTCAAAATTTTGATTTTCAACATTGGAAAGAACTACAGTAATCTGAACATTGGAAAGAACTACAGTAATCCATTCAAAAAAAACTATTAGGTTGGCAGGAAAGTAACTGTCCATTTTTTTATTAGTAATTAACACAAACACAGGAATAATCCAGAATTAGCAATATGCGCCGTCGTGATCCACAACATGTTGGCAATGTTCAGGTAACTTGTGGGTACCATCCCTCCAAAAGCCAGCTAGTGGCAAGTCAAAGTATCCCTCCAGTTCATTTTTTTAGGCATCAATTGTGTTAAAATCCTTAAGCTCCAGATGACGTCGTATACTTTTGAATAACCAATGATCTGATAGAGCTGAATCAAGTCTTTAACGGGGGTAAAGGAGAACCGTCCAGCCAAAGCGGCTCAGGTACGGCGTGACTTTCCGTGAACATGAGGTTTTTTCATTTTTTACCTGCAGTCAAGTCAGACCTGAGAAGCTTCAGTGGGACCGATCTCCCTCACCTACTTATAGTC</canonical>
            <polymorphic>TTATCTTTACAGCTGATTAGACTTAAAATTAGACTAATAAATTATGATTCTCAAAAATTTAATAATTGAAGGAAGATTTTTCAATATTTTATGTTTCAAATTTAAGACTTCTCACAGTTTTTGAGTTATTTCTCAATGATTAAACTTCATTTCTGGGGTTTTCTTCCAGTTTTAGTTTCCTAAAGACCAACAGAAAAAAATTAAGACACGTTCTCTGTAGAACTCCACTTCAAGCCTATTGTTCACTACAAAAATATTCAAACTTGTTTTTCGGAGTTGATGTTATATGTATCTTTTTGGAAATAATGTTAAAATTGTACACGACGACAGATTTTCAGTCATTTTTGTCGAAATTAGAACAAAAATCAAAATTTCCAGCAAGTACAAACTATTAGGTTTCCGCAAGATAATATGAACTGAATTGAAGTTCCGGCAGCTGTTTCATAATTCTCATAATCAAACGTTTACCCAAAATTTTCAGTAATAAAGTCAAAATTTTRATTTTCAACATTGGAAAGAACTACAGTAATCTGAACATTGGAAAGAACTACAGTAATCCATTCAAAAAAAACTATTAGGTTGGCAGGAAAGTAACTGTCCATTTTTTTATTAGTAATTAACACAAACACAGGAATAATCCAGAATTAGCAATATGCGCCGTCGTGATCCACAACATGTTGGCAATGTTCAGGTAACTTGTGGGTACCATCCCTCCAAAAGCCAGCTAGTGGCAAGTCAAAGTATCCCTCCAGTTCATTTTTTTAGGCATCAATTGTGTTAAAATCCTTAAGCTCCAGATGACGTCGTATACTTTTGAATAACCAATGATCTGATAGAGCTGAATCAAGTCTTTAACGGGGGTAAAGGAGAACCGTCCAGCCAAAGCGGCTCAGGTACGGCGTGACTTTCCGTGAACATGAGGTTTTTTCATTTTTTACCTGCAGTCAAGTCAGACCTGAGAAGCTTCAGTGGGACCGATCTCCCTCACCTACTTATAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTATTAGGTTTCCGCAAGATA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAATGGATTACTGTAGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>181</pcr_amplicon_size>
		<canonical_amplicon>ACTATTAGGTTTCCGCAAGATAATATGAACTGAATTGAAGTTCCGGCAGCTGTTTCATAATTCTCATAATCAAACGTTTACCCAAAATTTTCAGTAATAAAGTCAAAATTTTGATTTTCAACATTGGAAAGAACTACAGTAATCTGAACATTGGAAAGAACTACAGTAATCCATTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACTATTAGGTTTCCGCAAGATAATATGAACTGAATTGAAGTTCCGGCAGCTGTTTCATAATTCTCATAATCAAACGTTTACCCAAAATTTTCAGTAATAAAGTCAAAATTTTRATTTTCAACATTGGAAAGAACTACAGTAATCTGAACATTGGAAAGAACTACAGTAATCCATTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2367</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>364637</contig_pos>
        <strand>+</strand>
        <context>RACGTTTACC[A/C]AAAATTTTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTGAAGTTCCGGCAGCTGTTTCATAATTCTCATAATCAAACGTTTACC</left_flank>
        <right_flank>AAAATTTTCAGTAATAAAGTCAAAATTTTGATTTTCAACATTGGAAAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTTAAAAGCGACCTTTTTTGACACTATTATCTTTACAGCTGATTAGACTTAAAATTAGACTAATAAATTATGATTCTCAAAAATTTAATAATTGAAGGAAGATTTTTCAATATTTTATGTTTCAAATTTAAGACTTCTCACAGTTTTTGAGTTATTTCTCAATGATTAAACTTCATTTCTGGGGTTTTCTTCCAGTTTTAGTTTCCTAAAGACCAACAGAAAAAAATTAAGACACGTTCTCTGTAGAACTCCACTTCAAGCCTATTGTTCACTACAAAAATATTCAAACTTGTTTTTCGGAGTTGATGTTATATGTATCTTTTTGGAAATAATGTTAAAATTGTACACGACGACAGATTTTCAGTCATTTTTGTCGAAATTAGAACAAAAATCAAAATTTCCAGCAAGTACAAACTATTAGGTTTCCGCAAGATAATATGAACTGAATTGAAGTTCCGGCAGCTGTTTCATAATTCTCATAATCAAACGTTTACCCAAAATTTTCAGTAATAAAGTCAAAATTTTGATTTTCAACATTGGAAAGAACTACAGTAATCTGAACATTGGAAAGAACTACAGTAATCCATTCAAAAAAAACTATTAGGTTGGCAGGAAAGTAACTGTCCATTTTTTTATTAGTAATTAACACAAACACAGGAATAATCCAGAATTAGCAATATGCGCCGTCGTGATCCACAACATGTTGGCAATGTTCAGGTAACTTGTGGGTACCATCCCTCCAAAAGCCAGCTAGTGGCAAGTCAAAGTATCCCTCCAGTTCATTTTTTTAGGCATCAATTGTGTTAAAATCCTTAAGCTCCAGATGACGTCGTATACTTTTGAATAACCAATGATCTGATAGAGCTGAATCAAGTCTTTAACGGGGGTAAAGGAGAACCGTCCAGCCAAAGCGGCTCAGGTACGGCGTGACTTTCCGTGAACATGAGGTTTTTTCATTTTTTACCTGCAGTCAAGTCAGACCTGAGAAGCTTCAGT</canonical>
            <polymorphic>AATTTTTAAAAGCGACCTTTTTTGACACTATTATCTTTACAGCTGATTAGACTTAAAATTAGACTAATAAATTATGATTCTCAAAAATTTAATAATTGAAGGAAGATTTTTCAATATTTTATGTTTCAAATTTAAGACTTCTCACAGTTTTTGAGTTATTTCTCAATGATTAAACTTCATTTCTGGGGTTTTCTTCCAGTTTTAGTTTCCTAAAGACCAACAGAAAAAAATTAAGACACGTTCTCTGTAGAACTCCACTTCAAGCCTATTGTTCACTACAAAAATATTCAAACTTGTTTTTCGGAGTTGATGTTATATGTATCTTTTTGGAAATAATGTTAAAATTGTACACGACGACAGATTTTCAGTCATTTTTGTCGAAATTAGAACAAAAATCAAAATTTCCAGCAAGTACAAACTATTAGGTTTCCGCAAGATAATATGAACTGAATTGAAGTTCCGGCAGCTGTTTCATAATTCTCATAATCAAACGTTTACCMAAAATTTTCAGTAATAAAGTCAAAATTTTGATTTTCAACATTGGAAAGAACTACAGTAATCTGAACATTGGAAAGAACTACAGTAATCCATTCAAAAAAAACTATTAGGTTGGCAGGAAAGTAACTGTCCATTTTTTTATTAGTAATTAACACAAACACAGGAATAATCCAGAATTAGCAATATGCGCCGTCGTGATCCACAACATGTTGGCAATGTTCAGGTAACTTGTGGGTACCATCCCTCCAAAAGCCAGCTAGTGGCAAGTCAAAGTATCCCTCCAGTTCATTTTTTTAGGCATCAATTGTGTTAAAATCCTTAAGCTCCAGATGACGTCGTATACTTTTGAATAACCAATGATCTGATAGAGCTGAATCAAGTCTTTAACGGGGGTAAAGGAGAACCGTCCAGCCAAAGCGGCTCAGGTACGGCGTGACTTTCCGTGAACATGAGGTTTTTTCATTTTTTACCTGCAGTCAAGTCAGACCTGAGAAGCTTCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTATTAGGTTTCCGCAAGATA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAATGGATTACTGTAGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>181</pcr_amplicon_size>
		<canonical_amplicon>ACTATTAGGTTTCCGCAAGATAATATGAACTGAATTGAAGTTCCGGCAGCTGTTTCATAATTCTCATAATCAAACGTTTACCCAAAATTTTCAGTAATAAAGTCAAAATTTTGATTTTCAACATTGGAAAGAACTACAGTAATCTGAACATTGGAAAGAACTACAGTAATCCATTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACTATTAGGTTTCCGCAAGATAATATGAACTGAATTGAAGTTCCGGCAGCTGTTTCATAATTCTCATAATCAAACGTTTACCMAAAATTTTCAGTAATAAAGTCAAAATTTTGATTTTCAACATTGGAAAGAACTACAGTAATCTGAACATTGGAAAGAACTACAGTAATCCATTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2368</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>364627</contig_pos>
        <strand>+</strand>
        <context>CTCATAATCA[A/G]ACGTTTACCM</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATGAACTGAATTGAAGTTCCGGCAGCTGTTTCATAATTCTCATAATCA</left_flank>
        <right_flank>ACGTTTACCCAAAATTTTCAGTAATAAAGTCAAAATTTTGATTTTCAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTTCGAGCAATTTTTAAAAGCGACCTTTTTTGACACTATTATCTTTACAGCTGATTAGACTTAAAATTAGACTAATAAATTATGATTCTCAAAAATTTAATAATTGAAGGAAGATTTTTCAATATTTTATGTTTCAAATTTAAGACTTCTCACAGTTTTTGAGTTATTTCTCAATGATTAAACTTCATTTCTGGGGTTTTCTTCCAGTTTTAGTTTCCTAAAGACCAACAGAAAAAAATTAAGACACGTTCTCTGTAGAACTCCACTTCAAGCCTATTGTTCACTACAAAAATATTCAAACTTGTTTTTCGGAGTTGATGTTATATGTATCTTTTTGGAAATAATGTTAAAATTGTACACGACGACAGATTTTCAGTCATTTTTGTCGAAATTAGAACAAAAATCAAAATTTCCAGCAAGTACAAACTATTAGGTTTCCGCAAGATAATATGAACTGAATTGAAGTTCCGGCAGCTGTTTCATAATTCTCATAATCAAACGTTTACCCAAAATTTTCAGTAATAAAGTCAAAATTTTGATTTTCAACATTGGAAAGAACTACAGTAATCTGAACATTGGAAAGAACTACAGTAATCCATTCAAAAAAAACTATTAGGTTGGCAGGAAAGTAACTGTCCATTTTTTTATTAGTAATTAACACAAACACAGGAATAATCCAGAATTAGCAATATGCGCCGTCGTGATCCACAACATGTTGGCAATGTTCAGGTAACTTGTGGGTACCATCCCTCCAAAAGCCAGCTAGTGGCAAGTCAAAGTATCCCTCCAGTTCATTTTTTTAGGCATCAATTGTGTTAAAATCCTTAAGCTCCAGATGACGTCGTATACTTTTGAATAACCAATGATCTGATAGAGCTGAATCAAGTCTTTAACGGGGGTAAAGGAGAACCGTCCAGCCAAAGCGGCTCAGGTACGGCGTGACTTTCCGTGAACATGAGGTTTTTTCATTTTTTACCTGCAGTCAAGTCAGACCTGAG</canonical>
            <polymorphic>AGTTTCGAGCAATTTTTAAAAGCGACCTTTTTTGACACTATTATCTTTACAGCTGATTAGACTTAAAATTAGACTAATAAATTATGATTCTCAAAAATTTAATAATTGAAGGAAGATTTTTCAATATTTTATGTTTCAAATTTAAGACTTCTCACAGTTTTTGAGTTATTTCTCAATGATTAAACTTCATTTCTGGGGTTTTCTTCCAGTTTTAGTTTCCTAAAGACCAACAGAAAAAAATTAAGACACGTTCTCTGTAGAACTCCACTTCAAGCCTATTGTTCACTACAAAAATATTCAAACTTGTTTTTCGGAGTTGATGTTATATGTATCTTTTTGGAAATAATGTTAAAATTGTACACGACGACAGATTTTCAGTCATTTTTGTCGAAATTAGAACAAAAATCAAAATTTCCAGCAAGTACAAACTATTAGGTTTCCGCAAGATAATATGAACTGAATTGAAGTTCCGGCAGCTGTTTCATAATTCTCATAATCARACGTTTACCCAAAATTTTCAGTAATAAAGTCAAAATTTTGATTTTCAACATTGGAAAGAACTACAGTAATCTGAACATTGGAAAGAACTACAGTAATCCATTCAAAAAAAACTATTAGGTTGGCAGGAAAGTAACTGTCCATTTTTTTATTAGTAATTAACACAAACACAGGAATAATCCAGAATTAGCAATATGCGCCGTCGTGATCCACAACATGTTGGCAATGTTCAGGTAACTTGTGGGTACCATCCCTCCAAAAGCCAGCTAGTGGCAAGTCAAAGTATCCCTCCAGTTCATTTTTTTAGGCATCAATTGTGTTAAAATCCTTAAGCTCCAGATGACGTCGTATACTTTTGAATAACCAATGATCTGATAGAGCTGAATCAAGTCTTTAACGGGGGTAAAGGAGAACCGTCCAGCCAAAGCGGCTCAGGTACGGCGTGACTTTCCGTGAACATGAGGTTTTTTCATTTTTTACCTGCAGTCAAGTCAGACCTGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTATTAGGTTTCCGCAAGATA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAATGGATTACTGTAGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>181</pcr_amplicon_size>
		<canonical_amplicon>ACTATTAGGTTTCCGCAAGATAATATGAACTGAATTGAAGTTCCGGCAGCTGTTTCATAATTCTCATAATCAAACGTTTACCCAAAATTTTCAGTAATAAAGTCAAAATTTTGATTTTCAACATTGGAAAGAACTACAGTAATCTGAACATTGGAAAGAACTACAGTAATCCATTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACTATTAGGTTTCCGCAAGATAATATGAACTGAATTGAAGTTCCGGCAGCTGTTTCATAATTCTCATAATCARACGTTTACCCAAAATTTTCAGTAATAAAGTCAAAATTTTGATTTTCAACATTGGAAAGAACTACAGTAATCTGAACATTGGAAAGAACTACAGTAATCCATTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2370</snp_id>
        <super_contig>c000900824.Contig1</super_contig>
        <contig_pos>6093</contig_pos>
        <strand>+</strand>
        <context>AATCAGTACT[C/T]ATCGATAGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTATTCTTCTTCGTCTTGCTTGTATCCAACTAAAATGGAAAATCAGTACT</left_flank>
        <right_flank>ATCGATAGGATCGAGTTCAAGTCAAAGTAGTTCAGGTTTCGAAAGTGCTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGTAGTTGAGAATTCTTTTCTAATTTACTGAAAATCTGGTTTTAAAAAGTTTATTGACTTTAGAAGATGAACTGAATATTTTTGATAGATTACATTTTTTAAGTTGGTTCAATGGAGTGTGTTGTGGGAACACATCCTGTTAAATACAAAAAAAAATATTTTACTCACAAAACGCAAATTTCGGGCTTTGAGGGCCTTGTGTCATTTTCAGACTTTTTGACAGACTTTCTTCTTATACCATCGTTTGTCTACAACACACTAAATTCATTCATCTTGAAGAATGTCCACGTTTCGAAACTTATCAATCCTCTTGAAGTTGAAAAATAGAAACATTTTACTTTGTTCCCATTGTCATACGATATGCCATATAGAATTTCATTTTGTTTTCTGTGCTTTTTTCTTCAATGTATCGGGATTAGCACACTTTTTTGCAGAGCCATCTACGATGTATTCTTCTTCGTCTTGCTTGTATCCAACTAAAATGGAAAATCAGTACTCATCGATAGGATCGAGTTCAAGTCAAAGTAGTTCAGGTTTCGAAAGTGCTAAAGTATGTTTTCATTTGGTTTCAACTCGTAAAAAATCTATAAAAACATATCTCAGTGCTCAACATCTACATCTGCTTCATCGTTTCCGTCCGCTGTACAAAGTAATGAATCCGGTCGTGAATCTATTCATAGTGTCCGCTCTGTAGAAAGCGGTAGCGGCTCCTCATCTTCAATTCATGCGTTGGACGATTCACTTTATCGCTCTATTTATGAGATAGATGTAACAGGAATGGCTGAGAGTGGCGTGCCTCACGCGGAAATTCTAGCCAACTGGTTAGATAGTATTCATTTGAGCCAATATTTGGCGTTGTTTTTAAAACAAGGATACGATCTTCAAACTATAGGTATGTCCAAATTCAAATAGCCTGAGTAATTTATCCGCGAACGTTCACACTTATGAAACAACAAATTCTCTCAAAAACATCAATCATTAGTTGCTATAAAATTAAT</canonical>
            <polymorphic>TTCGTAGTTGAGAATTCTTTTCTAATTTACTGAAAATCTGGTTTTAAAAAGTTTATTGACTTTAGAAGATGAACTGAATATTTTTGATAGATTACATTTTTTAAGTTGGTTCAATGGAGTGTGTTGTGGGAACACATCCTGTTAAATACAAAAAAAAATATTTTACTCACAAAACGCAAATTTCGGGCTTTGAGGGCCTTGTGTCATTTTCAGACTTTTTGACAGACTTTCTTCTTATACCATCGTTTGTCTACAACACACTAAATTCATTCATCTTGAAGAATGTCCACGTTTCGAAACTTATCAATCCTCTTGAAGTTGAAAAATAGAAACATTTTACTTTGTTCCCATTGTCATACGATATGCCATATAGAATTTCATTTTGTTTTCTGTGCTTTTTTCTTCAATGTATCGGGATTAGCACACTTTTTTGCAGAGCCATCTACGATGTATTCTTCTTCGTCTTGCTTGTATCCAACTAAAATGGAAAATCAGTACTYATCGATAGGATCGAGTTCAAGTCAAAGTAGTTCAGGTTTCGAAAGTGCTAAAGTATGTTTTCATTTGGTTTCAACTCGTAAAAAATCTATAAAAACATATCTCAGTGCTCAACATCTACATCTGCTTCATCGTTTCCGTCCGCTGTACAAAGTAATGAATCCGGTCGTGAATCTATTCATAGTGTCCGCTCTGTAGAAAGCGGTAGCGGCTCCTCATCTTCAATTCATGCGTTGGACGATTCACTTTATCGCTCTATTTATGAGATAGATGTAACAGGAATGGCTGAGAGTGGCGTGCCTCACGCGGAAATTCTAGCCAACTGGTTAGATAGTATTCATTTGAGCCAATATTTGGCGTTGTTTTTAAAACAAGGATACGATCTTCAAACTATAGGTATGTCCAAATTCAAATAGCCTGAGTAATTTATCCGCGAACGTTCACACTTATGAAACAACAAATTCTCTCAAAAACATCAATCATTAGTTGCTATAAAATTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAATTTCATTTTGTTTTCTGTG</pcr_primer_p1>
		<pcr_primer_p2>ATGTAGATGTTGAGCACTGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAATTTCATTTTGTTTTCTGTGCTTTTTTCTTCAATGTATCGGGATTAGCACACTTTTTTGCAGAGCCATCTACGATGTATTCTTCTTCGTCTTGCTTGTATCCAACTAAAATGGAAAATCAGTACTCATCGATAGGATCGAGTTCAAGTCAAAGTAGTTCAGGTTTCGAAAGTGCTAAAGTATGTTTTCATTTGGTTTCAACTCGTAAAAAATCTATAAAAACATATCTCAGTGCTCAACATCTACAT</canonical_amplicon>
		<polymorphic_amplicon>AGAATTTCATTTTGTTTTCTGTGCTTTTTTCTTCAATGTATCGGGATTAGCACACTTTTTTGCAGAGCCATCTACGATGTATTCTTCTTCGTCTTGCTTGTATCCAACTAAAATGGAAAATCAGTACTYATCGATAGGATCGAGTTCAAGTCAAAGTAGTTCAGGTTTCGAAAGTGCTAAAGTATGTTTTCATTTGGTTTCAACTCGTAAAAAATCTATAAAAACATATCTCAGTGCTCAACATCTACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2371</snp_id>
        <super_contig>c000900824.Contig1</super_contig>
        <contig_pos>7680</contig_pos>
        <strand>+</strand>
        <context>TTTTGAGCGA[C/T]ATAAGCAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATCGCCCCATTCGACTAAGCTTAGTTTCCACGGGAAAAATTTTGAGCGA</left_flank>
        <right_flank>ATAAGCAAATTGAGAAAAAGCGAAGAAGAAGACGAAGAGCTGGAAGATCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATGGGAAGATTTCGAGGACATCGGTGTTAAGCGATTGGGTCATTTAAAACGGTTCGGGTTGACAATTAAGAAGTTGAAGGTTTGCTAAATATCCACATGTTTTTACAAAGTCAATTTTAGGAGTATCAACGTCACACATTCAGCTATCCACAAAATGCTTCTAACAATTCTACGATGAATGTTGACATGGGTTATTCTCTTCATTCTCACACTCACTCAAGTATATCGGACTCTCGAAGAAGTCTAAACATTTCAAGGATCAACGATCCACCACCTCCAGCGCCTTCAGGACCCTATCGCTCTTTCAAAGAAAGTAGTGATGAACTAGACAAGGAGATTTTCGAAAAAAATCTCTGGGATTCGGTATCAACTCTATCGAGTGCACATTGTAAGCCTATCCATCTCATTTCTAAGCCAAAAAGCACTTCGGATTTGCTTTTCGGAGACGATCGCCCCATTCGACTAAGCTTAGTTTCCACGGGAAAAATTTTGAGCGATATAAGCAAATTGAGAAAAAGCGAAGAAGAAGACGAAGAGCTGGAAGATCCAAACGAGTGTCCACCGCCGCCAGGTAAGCCTTAAGCACAAAATAATAATGAAGAATGCGAAAAGTCAATTTGTGACAAAATTGAGAAATAAATATCATCAGCAGATAACCGTTTGAATCATGAAAGTTTCCATAAATTATCACTAAATTAAATGACTGAATGAAAATCATCAAATTTCTTCAGCCCCTCTTCATTGCAACGTTGGTCCGCATCACACATCATCTTTCAACCTGCCCTCTTTCAACTTTTCACAAAGCAATGAACAATTTCCTTTTGCTAATGAGAACTGTGGGACTATAAAGTGAGCATAATCGTATAAATATTCATGTACATTCAGAAATCACGCGTTTAGATACTCCGCCGGTCGTTCAACATCGGCTTTTAATGTACCTTCTTCGCTGCCACCGCTTCTCTCAGACGACCACGTCAGGTAAAATGCATAAAAAATAT</canonical>
            <polymorphic>CAATGGGAAGATTTCGAGGACATCGGTGTTAAGCGATTGGGTCATTTAAAACGGTTCGGGTTGACAATTAAGAAGTTGAAGGTTTGCTAAATATCCACATGTTTTTACAAAGTCAATTTTAGGAGTATCAACGTCACACATTCAGCTATCCACAAAATGCTTCTAACAATTCTACGATGAATGTTGACATGGGTTATTCTCTTCATTCTCACACTCACTCAAGTATATCGGACTCTCGAAGAAGTCTAAACATTTCAAGGATCAACGATCCACCACCTCCAGCGCCTTCAGGACCCTATCGCTCTTTCAAAGAAAGTAGTGATGAACTAGACAAGGAGATTTTCGAAAAAAATCTCTGGGATTCGGTATCAACTCTATCGAGTGCACATTGTAAGCCTATCCATCTCATTTCTAAGCCAAAAAGCACTTCGGATTTGCTTTTCGGAGACGATCGCCCCATTCGACTAAGCTTAGTTTCCACGGGAAAAATTTTGAGCGAYATAAGCAAATTGAGAAAAAGCGAAGAAGAAGACGAAGAGCTGGAAGATCCAAACGAGTGTCCACCGCCGCCAGGTAAGCCTTAAGCACAAAATAATAATGAAGAATGCGAAAAGTCAATTTGTGACAAAATTGAGAAATAAATATCATCAGCAGATAACCGTTTGAATCATGAAAGTTTCCATAAATTATCACTAAATTAAATGACTGAATGAAAATCATCAAATTTCTTCAGCCCCTCTTCATTGCAACGTTGGTCCGCATCACACATCATCTTTCAACCTGCCCTCTTTCAACTTTTCACAAAGCAATGAACAATTTCCTTTTGCTAATGAGAACTGTGGGACTATAAAGTGAGCATAATCGTATAAATATTCATGTACATTCAGAAATCACGCGTTTAGATACTCCGCCGGTCGTTCAACATCGGCTTTTAATGTACCTTCTTCGCTGCCACCGCTTCTCTCAGACGACCACGTCAGGTAAAATGCATAAAAAATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTATCGAGTGCACATTGTAA</pcr_primer_p1>
		<pcr_primer_p2>ACTTTTCGCATTCTTCATTATTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTCTATCGAGTGCACATTGTAAGCCTATCCATCTCATTTCTAAGCCAAAAAGCACTTCGGATTTGCTTTTCGGAGACGATCGCCCCATTCGACTAAGCTTAGTTTCCACGGGAAAAATTTTGAGCGATATAAGCAAATTGAGAAAAAGCGAAGAAGAAGACGAAGAGCTGGAAGATCCAAACGAGTGTCCACCGCCGCCAGGTAAGCCTTAAGCACAAAATAATAATGAAGAATGCGAAAAGT</canonical_amplicon>
		<polymorphic_amplicon>CTCTATCGAGTGCACATTGTAAGCCTATCCATCTCATTTCTAAGCCAAAAAGCACTTCGGATTTGCTTTTCGGAGACGATCGCCCCATTCGACTAAGCTTAGTTTCCACGGGAAAAATTTTGAGCGAYATAAGCAAATTGAGAAAAAGCGAAGAAGAAGACGAAGAGCTGGAAGATCCAAACGAGTGTCCACCGCCGCCAGGTAAGCCTTAAGCACAAAATAATAATGAAGAATGCGAAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2372</snp_id>
        <super_contig>c000900824.Contig1</super_contig>
        <contig_pos>7547</contig_pos>
        <strand>+</strand>
        <context>TGGGATTCGG[C/T]ATCAACTCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGTGATGAACTAGACAAGGAGATTTTCGAAAAAAATCTCTGGGATTCGG</left_flank>
        <right_flank>ATCAACTCTATCGAGTGCACATTGTAAGCCTATCCATCTCATTTCTAAGC</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTATCAAAGTTATTGATAGTGACACTCGAAATTCAATTCTTTAGGGAATGGCTCCAAGCAATAGCTCTAGCAGAATATATTCCATTATTTGAAAGTCAAAAGTATAAAACTGTTCAAGACGTGCTGGATTTGCAATGGGAAGATTTCGAGGACATCGGTGTTAAGCGATTGGGTCATTTAAAACGGTTCGGGTTGACAATTAAGAAGTTGAAGGTTTGCTAAATATCCACATGTTTTTACAAAGTCAATTTTAGGAGTATCAACGTCACACATTCAGCTATCCACAAAATGCTTCTAACAATTCTACGATGAATGTTGACATGGGTTATTCTCTTCATTCTCACACTCACTCAAGTATATCGGACTCTCGAAGAAGTCTAAACATTTCAAGGATCAACGATCCACCACCTCCAGCGCCTTCAGGACCCTATCGCTCTTTCAAAGAAAGTAGTGATGAACTAGACAAGGAGATTTTCGAAAAAAATCTCTGGGATTCGGTATCAACTCTATCGAGTGCACATTGTAAGCCTATCCATCTCATTTCTAAGCCAAAAAGCACTTCGGATTTGCTTTTCGGAGACGATCGCCCCATTCGACTAAGCTTAGTTTCCACGGGAAAAATTTTGAGCGATATAAGCAAATTGAGAAAAAGCGAAGAAGAAGACGAAGAGCTGGAAGATCCAAACGAGTGTCCACCGCCGCCAGGTAAGCCTTAAGCACAAAATAATAATGAAGAATGCGAAAAGTCAATTTGTGACAAAATTGAGAAATAAATATCATCAGCAGATAACCGTTTGAATCATGAAAGTTTCCATAAATTATCACTAAATTAAATGACTGAATGAAAATCATCAAATTTCTTCAGCCCCTCTTCATTGCAACGTTGGTCCGCATCACACATCATCTTTCAACCTGCCCTCTTTCAACTTTTCACAAAGCAATGAACAATTTCCTTTTGCTAATGAGAACTGTGGGACTATAAAGTGAGCATAATCGTAT</canonical>
            <polymorphic>GGTATCAAAGTTATTGATAGTGACACTCGAAATTCAATTCTTTAGGGAATGGCTCCAAGCAATAGCTCTAGCAGAATATATTCCATTATTTGAAAGTCAAAAGTATAAAACTGTTCAAGACGTGCTGGATTTGCAATGGGAAGATTTCGAGGACATCGGTGTTAAGCGATTGGGTCATTTAAAACGGTTCGGGTTGACAATTAAGAAGTTGAAGGTTTGCTAAATATCCACATGTTTTTACAAAGTCAATTTTAGGAGTATCAACGTCACACATTCAGCTATCCACAAAATGCTTCTAACAATTCTACGATGAATGTTGACATGGGTTATTCTCTTCATTCTCACACTCACTCAAGTATATCGGACTCTCGAAGAAGTCTAAACATTTCAAGGATCAACGATCCACCACCTCCAGCGCCTTCAGGACCCTATCGCTCTTTCAAAGAAAGTAGTGATGAACTAGACAAGGAGATTTTCGAAAAAAATCTCTGGGATTCGGYATCAACTCTATCGAGTGCACATTGTAAGCCTATCCATCTCATTTCTAAGCCAAAAAGCACTTCGGATTTGCTTTTCGGAGACGATCGCCCCATTCGACTAAGCTTAGTTTCCACGGGAAAAATTTTGAGCGATATAAGCAAATTGAGAAAAAGCGAAGAAGAAGACGAAGAGCTGGAAGATCCAAACGAGTGTCCACCGCCGCCAGGTAAGCCTTAAGCACAAAATAATAATGAAGAATGCGAAAAGTCAATTTGTGACAAAATTGAGAAATAAATATCATCAGCAGATAACCGTTTGAATCATGAAAGTTTCCATAAATTATCACTAAATTAAATGACTGAATGAAAATCATCAAATTTCTTCAGCCCCTCTTCATTGCAACGTTGGTCCGCATCACACATCATCTTTCAACCTGCCCTCTTTCAACTTTTCACAAAGCAATGAACAATTTCCTTTTGCTAATGAGAACTGTGGGACTATAAAGTGAGCATAATCGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATGTTGACATGGGTTATTCT</pcr_primer_p1>
		<pcr_primer_p2>AGTGCTTTTTGGCTTAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATGTTGACATGGGTTATTCTCTTCATTCTCACACTCACTCAAGTATATCGGACTCTCGAAGAAGTCTAAACATTTCAAGGATCAACGATCCACCACCTCCAGCGCCTTCAGGACCCTATCGCTCTTTCAAAGAAAGTAGTGATGAACTAGACAAGGAGATTTTCGAAAAAAATCTCTGGGATTCGGTATCAACTCTATCGAGTGCACATTGTAAGCCTATCCATCTCATTTCTAAGCCAAAAAGCACT</canonical_amplicon>
		<polymorphic_amplicon>GAATGTTGACATGGGTTATTCTCTTCATTCTCACACTCACTCAAGTATATCGGACTCTCGAAGAAGTCTAAACATTTCAAGGATCAACGATCCACCACCTCCAGCGCCTTCAGGACCCTATCGCTCTTTCAAAGAAAGTAGTGATGAACTAGACAAGGAGATTTTCGAAAAAAATCTCTGGGATTCGGYATCAACTCTATCGAGTGCACATTGTAAGCCTATCCATCTCATTTCTAAGCCAAAAAGCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2373</snp_id>
        <super_contig>c000900824.Contig1</super_contig>
        <contig_pos>18489</contig_pos>
        <strand>+</strand>
        <context>CAGAGTCGGC[A/G]AGAGTCTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCGCGTTTTGGTTCGATTGTTCCGTCCCTCATTGCCAACAGAGTCGGC</left_flank>
        <right_flank>AGAGTCTGAAATGGTGATATCATCGTGAAATGTTTTTGATTATTTCGTTA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAGTTTTATCACAACTGCCATGACAGTGTTACTCGCTGTTTCAGAGTTTCCAATTGTATAATCCCATCCGGTGAACAATTTCCAGTTAAAAATGTACTGTTCGGCTTTGCTTCCAGACAACTTGGACATTCTTGCATTAGCAGCCATTCTAAGATTTTGAACAGTTTTTGTGAACTTGCGAAAAAACTCACTTCCGTAAAATCGCAAAAAAACTGTAAGCAAATATTGTGAGTGTGACCATAAAGTAGGCAAGCGGAAGTGCATATTTTATCTTGTTTCCTAGAAATGGGTCGTCCGAGTAGTATCCATAAAACAATGGCGAATAGCGCAGATATCCCTGAATAAAAAATCACAATAGACTCGTTTTCAATACTAAAACTCATTACATCATAATGCCAAACAACGGCTAACTCGTCGGCATGAACCTTTTCATTTGCTGGGATCTGTTTTCGCGTTTTGGTTCGATTGTTCCGTCCCTCATTGCCAACAGAGTCGGCGAGAGTCTGAAATGGTGATATCATCGTGAAATGTTTTTGATTATTTCGTTAAAGCAAATTTTGCAAAAAAAGACTAGACCTCAGGAAGAACAACAAATGCAACAGCTATCAAAGTGATCATTATGTTGACAAAAACGATCCAACGCAAGAATGTGAAGTAAGAAGAAACGACAGATCCAAAATGACCTAAAACACGAAAATATAATAACACACTTGATGGCTAGCTCCTTACTTTCTATTCTCTTGATTTTTGACTCCCATGGTATCAAATAAGTTTTGAAGTTGGAAAAACTCCGTTTCATCAACCTCGCCCTCTTTCTCATTTCCTCCATGTATAGATGGCTTCGTGATACTTCGATTCGTGCTGTTCAAGATATTTTTGAGCAAGCCTGAATTATTTCAATGAGTATATTTCATTAAAAAATGTGTCCAAAGCTCAAAAAATAGAAATTGGAAACGTACTTTAACGTCCTTCGTTTTCTGGTCATACTCCATGCCTGG</canonical>
            <polymorphic>CTGAGTTTTATCACAACTGCCATGACAGTGTTACTCGCTGTTTCAGAGTTTCCAATTGTATAATCCCATCCGGTGAACAATTTCCAGTTAAAAATGTACTGTTCGGCTTTGCTTCCAGACAACTTGGACATTCTTGCATTAGCAGCCATTCTAAGATTTTGAACAGTTTTTGTGAACTTGCGAAAAAACTCACTTCCGTAAAATCGCAAAAAAACTGTAAGCAAATATTGTGAGTGTGACCATAAAGTAGGCAAGCGGAAGTGCATATTTTATCTTGTTTCCTAGAAATGGGTCGTCCGAGTAGTATCCATAAAACAATGGCGAATAGCGCAGATATCCCTGAATAAAAAATCACAATAGACTCGTTTTCAATACTAAAACTCATTACATCATAATGCCAAACAACGGCTAACTCGTCGGCATGAACCTTTTCATTTGCTGGGATCTGTTTTCGCGTTTTGGTTCGATTGTTCCGTCCCTCATTGCCAACAGAGTCGGCRAGAGTCTGAAATGGTGATATCATCGTGAAATGTTTTTGATTATTTCGTTAAAGCAAATTTTGCAAAAAAAGACTAGACCTCAGGAAGAACAACAAATGCAACAGCTATCAAAGTGATCATTATGTTGACAAAAACGATCCAACGCAAGAATGTGAAGTAAGAAGAAACGACAGATCCAAAATGACCTAAAACACGAAAATATAATAACACACTTGATGGCTAGCTCCTTACTTTCTATTCTCTTGATTTTTGACTCCCATGGTATCAAATAAGTTTTGAAGTTGGAAAAACTCCGTTTCATCAACCTCGCCCTCTTTCTCATTTCCTCCATGTATAGATGGCTTCGTGATACTTCGATTCGTGCTGTTCAAGATATTTTTGAGCAAGCCTGAATTATTTCAATGAGTATATTTCATTAAAAAATGTGTCCAAAGCTCAAAAAATAGAAATTGGAAACGTACTTTAACGTCCTTCGTTTTCTGGTCATACTCCATGCCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCACAATAGACTCGTTTTCA</pcr_primer_p1>
		<pcr_primer_p2>ATTTGTTGTTCTTCCTGAGGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATCACAATAGACTCGTTTTCAATACTAAAACTCATTACATCATAATGCCAAACAACGGCTAACTCGTCGGCATGAACCTTTTCATTTGCTGGGATCTGTTTTCGCGTTTTGGTTCGATTGTTCCGTCCCTCATTGCCAACAGAGTCGGCGAGAGTCTGAAATGGTGATATCATCGTGAAATGTTTTTGATTATTTCGTTAAAGCAAATTTTGCAAAAAAAGACTAGACCTCAGGAAGAACAACAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAATCACAATAGACTCGTTTTCAATACTAAAACTCATTACATCATAATGCCAAACAACGGCTAACTCGTCGGCATGAACCTTTTCATTTGCTGGGATCTGTTTTCGCGTTTTGGTTCGATTGTTCCGTCCCTCATTGCCAACAGAGTCGGCRAGAGTCTGAAATGGTGATATCATCGTGAAATGTTTTTGATTATTTCGTTAAAGCAAATTTTGCAAAAAAAGACTAGACCTCAGGAAGAACAACAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2374</snp_id>
        <super_contig>c000900824.Contig1</super_contig>
        <contig_pos>39541</contig_pos>
        <strand>+</strand>
        <context>ATTCTGGGAA[A/G]AAAAATCTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATTAGAAAGCTAAAACCAATTAGATGATTACTAAACTTATTCTGGGAA</left_flank>
        <right_flank>AAAAATCTGAGATAAAACTAGAATGAAGAAATTTAAAGGCGTTTCAGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAGGCTGACAGAGCGCGTTTGCAATGACCTTGTGGCCGGGGGAGAAATACGTCATCGGTGGGTTCCTCCGCCGATCGGCCGCTCGCTCACATTTACACATTCCTTGACACAGACACGCACACGCACACACTCGTCGACACTCGCCAGCAAACACAGACACAGGCAGAGACGACATCTGCGTAACGTCATAATCAATGGGCATACGAAAGGCAAGAAAGTTGAATAACTCAAGAAAGAATATTTATTATTATTATATTATTGAAAGACGAGAAGTTTTGAAAAAATACTAAAATCGTTCAAGGATGTCATCTTTACTCAGTTCGTTTCCACTGTCACTGCCAAAATGGGAATCTGGGTTGACCAAGTTTAGAACTTCTTCCGGCAGAAATGTTCGGTATATCTGAATTTTGAACTGATTTCGATAATGATAGACGGAATTGATCATTATACATTAGAAAGCTAAAACCAATTAGATGATTACTAAACTTATTCTGGGAAAAAAAATCTGAGATAAAACTAGAATGAAGAAATTTAAAGGCGTTTCAGTTTTGAACCAAGACATCACTATTTGAATGTTTTTGTATTTCAAAATCACCAAGTAAACCACGAGCGTCAGAACGATCAACCCAGCCAGTGCAGATCCAACAATAATTGGTACTAAATCTGTAGTGTTTTCATCTGACGGACATACTTGCTCTGAATTCATAAACGTTTTACAAATTTTATAAATATAAACTTACTTGGTCCAAATGAAGCACTTTTCATGTATGCTTGAATAGTAGTCAATTTAAACTTTATGCTGTAATACAATTCCGATCGTTTCTCTTCCGATAAAACTACTTACTAAGCCACATCGTCGTTAATAGCATATTTCTGTTCACTCGGACAATAGTATGAGTTCCCAATATCGGCGTATATTGAACCGCTCAAATCGGAGAGATTGTTTGGATCAATGTGAAGATTGTAGCTTTGAGTTGGGTATTTTGCATTTGGAAATGA</canonical>
            <polymorphic>GCAGGCTGACAGAGCGCGTTTGCAATGACCTTGTGGCCGGGGGAGAAATACGTCATCGGTGGGTTCCTCCGCCGATCGGCCGCTCGCTCACATTTACACATTCCTTGACACAGACACGCACACGCACACACTCGTCGACACTCGCCAGCAAACACAGACACAGGCAGAGACGACATCTGCGTAACGTCATAATCAATGGGCATACGAAAGGCAAGAAAGTTGAATAACTCAAGAAAGAATATTTATTATTATTATATTATTGAAAGACGAGAAGTTTTGAAAAAATACTAAAATCGTTCAAGGATGTCATCTTTACTCAGTTCGTTTCCACTGTCACTGCCAAAATGGGAATCTGGGTTGACCAAGTTTAGAACTTCTTCCGGCAGAAATGTTCGGTATATCTGAATTTTGAACTGATTTCGATAATGATAGACGGAATTGATCATTATACATTAGAAAGCTAAAACCAATTAGATGATTACTAAACTTATTCTGGGAARAAAAATCTGAGATAAAACTAGAATGAAGAAATTTAAAGGCGTTTCAGTTTTGAACCAAGACATCACTATTTGAATGTTTTTGTATTTCAAAATCACCAAGTAAACCACGAGCGTCAGAACGATCAACCCAGCCAGTGCAGATCCAACAATAATTGGTACTAAATCTGTAGTGTTTTCATCTGACGGACATACTTGCTCTGAATTCATAAACGTTTTACAAATTTTATAAATATAAACTTACTTGGTCCAAATGAAGCACTTTTCATGTATGCTTGAATAGTAGTCAATTTAAACTTTATGCTGTAATACAATTCCGATCGTTTCTCTTCCGATAAAACTACTTACTAAGCCACATCGTCGTTAATAGCATATTTCTGTTCACTCGGACAATAGTATGAGTTCCCAATATCGGCGTATATTGAACCGCTCAAATCGGAGAGATTGTTTGGATCAATGTGAAGATTGTAGCTTTGAGTTGGGTATTTTGCATTTGGAAATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGAATTGATCATTATACATTAGA</pcr_primer_p1>
		<pcr_primer_p2>CGTCAGATGAAAACACTACAGAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGGAATTGATCATTATACATTAGAAAGCTAAAACCAATTAGATGATTACTAAACTTATTCTGGGAAAAAAAATCTGAGATAAAACTAGAATGAAGAAATTTAAAGGCGTTTCAGTTTTGAACCAAGACATCACTATTTGAATGTTTTTGTATTTCAAAATCACCAAGTAAACCACGAGCGTCAGAACGATCAACCCAGCCAGTGCAGATCCAACAATAATTGGTACTAAATCTGTAGTGTTTTCATCTGACG</canonical_amplicon>
		<polymorphic_amplicon>CGGAATTGATCATTATACATTAGAAAGCTAAAACCAATTAGATGATTACTAAACTTATTCTGGGAARAAAAATCTGAGATAAAACTAGAATGAAGAAATTTAAAGGCGTTTCAGTTTTGAACCAAGACATCACTATTTGAATGTTTTTGTATTTCAAAATCACCAAGTAAACCACGAGCGTCAGAACGATCAACCCAGCCAGTGCAGATCCAACAATAATTGGTACTAAATCTGTAGTGTTTTCATCTGACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2375</snp_id>
        <super_contig>c000900824.Contig1</super_contig>
        <contig_pos>39856</contig_pos>
        <strand>+</strand>
        <context>AATACAATTC[A/C]GATCGTTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGTATGCTTGAATAGTAGTCAATTTAAACTTTATGCTGTAATACAATTC</left_flank>
        <right_flank>GATCGTTTCTCTTCCGATAAAACTACTTACTAAGCCACATCGTCGTTAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCAGTTCGTTTCCACTGTCACTGCCAAAATGGGAATCTGGGTTGACCAAGTTTAGAACTTCTTCCGGCAGAAATGTTCGGTATATCTGAATTTTGAACTGATTTCGATAATGATAGACGGAATTGATCATTATACATTAGAAAGCTAAAACCAATTAGATGATTACTAAACTTATTCTGGGAAAAAAAATCTGAGATAAAACTAGAATGAAGAAATTTAAAGGCGTTTCAGTTTTGAACCAAGACATCACTATTTGAATGTTTTTGTATTTCAAAATCACCAAGTAAACCACGAGCGTCAGAACGATCAACCCAGCCAGTGCAGATCCAACAATAATTGGTACTAAATCTGTAGTGTTTTCATCTGACGGACATACTTGCTCTGAATTCATAAACGTTTTACAAATTTTATAAATATAAACTTACTTGGTCCAAATGAAGCACTTTTCATGTATGCTTGAATAGTAGTCAATTTAAACTTTATGCTGTAATACAATTCCGATCGTTTCTCTTCCGATAAAACTACTTACTAAGCCACATCGTCGTTAATAGCATATTTCTGTTCACTCGGACAATAGTATGAGTTCCCAATATCGGCGTATATTGAACCGCTCAAATCGGAGAGATTGTTTGGATCAATGTGAAGATTGTAGCTTTGAGTTGGGTATTTTGCATTTGGAAATGATGATGGGTCTGATGAAAAATTAGCCGTTACGTTCACTTGGAAAAGTGTGAATTCTTTTCCTTCCGTTTTGAATCTTTTGTCTTCAGTGAAACCAAGATCAATCGTCCATCCGGCCATCTGGGATAGCGGATATTAAATGCGTCACGCTGAAGGGAACAGGGAATTGTTAAAATAATGATATCAAAACAAACAGTATTTAGAAATCATTTGTGTAGTGGACATTTATAAAAACGCACTACGTAAAATGTTAGTATCCTATTTCAAATTCACGTAATTGTTGTTTCTTAACATTTTTAGACTTCTGCGCATTCACGC</canonical>
            <polymorphic>CTCAGTTCGTTTCCACTGTCACTGCCAAAATGGGAATCTGGGTTGACCAAGTTTAGAACTTCTTCCGGCAGAAATGTTCGGTATATCTGAATTTTGAACTGATTTCGATAATGATAGACGGAATTGATCATTATACATTAGAAAGCTAAAACCAATTAGATGATTACTAAACTTATTCTGGGAAAAAAAATCTGAGATAAAACTAGAATGAAGAAATTTAAAGGCGTTTCAGTTTTGAACCAAGACATCACTATTTGAATGTTTTTGTATTTCAAAATCACCAAGTAAACCACGAGCGTCAGAACGATCAACCCAGCCAGTGCAGATCCAACAATAATTGGTACTAAATCTGTAGTGTTTTCATCTGACGGACATACTTGCTCTGAATTCATAAACGTTTTACAAATTTTATAAATATAAACTTACTTGGTCCAAATGAAGCACTTTTCATGTATGCTTGAATAGTAGTCAATTTAAACTTTATGCTGTAATACAATTCMGATCGTTTCTCTTCCGATAAAACTACTTACTAAGCCACATCGTCGTTAATAGCATATTTCTGTTCACTCGGACAATAGTATGAGTTCCCAATATCGGCGTATATTGAACCGCTCAAATCGGAGAGATTGTTTGGATCAATGTGAAGATTGTAGCTTTGAGTTGGGTATTTTGCATTTGGAAATGATGATGGGTCTGATGAAAAATTAGCCGTTACGTTCACTTGGAAAAGTGTGAATTCTTTTCCTTCCGTTTTGAATCTTTTGTCTTCAGTGAAACCAAGATCAATCGTCCATCCGGCCATCTGGGATAGCGGATATTAAATGCGTCACGCTGAAGGGAACAGGGAATTGTTAAAATAATGATATCAAAACAAACAGTATTTAGAAATCATTTGTGTAGTGGACATTTATAAAAACGCACTACGTAAAATGTTAGTATCCTATTTCAAATTCACGTAATTGTTGTTTCTTAACATTTTTAGACTTCTGCGCATTCACGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CGATCG</site>
                <isoschizomers>
                    <enzyme>BspCI</enzyme>
                    <enzyme>Ple19I</enzyme>
                    <enzyme>PvuI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGTACTAAATCTGTAGTGTTTTCA</pcr_primer_p1>
		<pcr_primer_p2>CTCATACTATTGTCCGAGTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TGGTACTAAATCTGTAGTGTTTTCATCTGACGGACATACTTGCTCTGAATTCATAAACGTTTTACAAATTTTATAAATATAAACTTACTTGGTCCAAATGAAGCACTTTTCATGTATGCTTGAATAGTAGTCAATTTAAACTTTATGCTGTAATACAATTCCGATCGTTTCTCTTCCGATAAAACTACTTACTAAGCCACATCGTCGTTAATAGCATATTTCTGTTCACTCGGACAATAGTATGAG</canonical_amplicon>
		<polymorphic_amplicon>TGGTACTAAATCTGTAGTGTTTTCATCTGACGGACATACTTGCTCTGAATTCATAAACGTTTTACAAATTTTATAAATATAAACTTACTTGGTCCAAATGAAGCACTTTTCATGTATGCTTGAATAGTAGTCAATTTAAACTTTATGCTGTAATACAATTCMGATCGTTTCTCTTCCGATAAAACTACTTACTAAGCCACATCGTCGTTAATAGCATATTTCTGTTCACTCGGACAATAGTATGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2376</snp_id>
        <super_contig>c000900824.Contig1</super_contig>
        <contig_pos>41023</contig_pos>
        <strand>+</strand>
        <context>GTCAAACACA[A/G]CAACAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACTCCTTTGTTTGCCGCATCAGAAGCTGTGTCGATAACTGTCAAACACA</left_flank>
        <right_flank>CAACAAAAATGTAAAAACGAGAGTCAAAAGTTTGTCCTGTTCCATCTGAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTTTCTTAGTTCTGCATGCTTATTTAAAAAACTCACGTGGTACAAATTAATTCGTAGAAGTTGAGCTGGAACCGACATGCCAGCAGTAGCTATATATGTGTCACAAGTGGATACAGCAGTATCCGCAGTCGAAGAAGTTGGCACGTGGACAACCACATCTTTCTGAATACAGTTTGAAACAAACGATAATTGGAAAAACACTTACTTCACTATCACTTGTTTGATATGTAAGGTACAAGTATATATCAGCTTGAACAATTATGCAGGGAACACCAGAGCTATATACCTGAAAATGTCTATTTTTCGCGTTCAATGAATGTACATTTATTAAAAGTACCATTTGATTGGTACTCTGAGTTTTTTGCCCATATCAGTTTATGTTTTTTGATGTGAGAGTACTAGGAATGGTCATAACAAATTGTTATAGAAAGTACCCGTACTTTGTAAACTCCTTTGTTTGCCGCATCAGAAGCTGTGTCGATAACTGTCAAACACAACAACAAAAATGTAAAAACGAGAGTCAAAAGTTTGTCCTGTTCCATCTGAGGATAAAACATTATTGATAACAATTATAATATAAATCAACTTAAACTCACCGTTCTGAAAGTAGAATTAAATGTGCTGTTTGATTCAATGCACCACACACAGAAATATCAGCAATCCAACTCGCGGTGAAGTTTTCTTATCGTTTCTGCTGCACGCACTCACTTAAATTTTATTAGAGTCGTTATATTTTATGAAACATTACAGAGATCCTGGTCAACGGTGACAAAAAGTCAAAACTAAGCAAAAAAAGTTGAAAGTGATATAGTCGGTTCTTATTTTCAAGTGAAGATTTATTCCAATTAATTGGCAACGATACCGTTCAAAAACTCAAAAATAAGATTATACTAAACATATGCAAGAAATTTCACATGAAAAAAAAACTAACAATTAACAAAAACACAAGAAATCATATGTAATCACAAATAAGTATAAATTATTTCTTCCCGAATTT</canonical>
            <polymorphic>GTTTTTTCTTAGTTCTGCATGCTTATTTAAAAAACTCACGTGGTACAAATTAATTCGTAGAAGTTGAGCTGGAACCGACATGCCAGCAGTAGCTATATATGTGTCACAAGTGGATACAGCAGTATCCGCAGTCGAAGAAGTTGGCACGTGGACAACCACATCTTTCTGAATACAGTTTGAAACAAACGATAATTGGAAAAACACTTACTTCACTATCACTTGTTTGATATGTAAGGTACAAGTATATATCAGCTTGAACAATTATGCAGGGAACACCAGAGCTATATACCTGAAAATGTCTATTTTTCGCGTTCAATGAATGTACATTTATTAAAAGTACCATTTGATTGGTACTCTGAGTTTTTTGCCCATATCAGTTTATGTTTTTTGATGTGAGAGTACTAGGAATGGTCATAACAAATTGTTATAGAAAGTACCCGTACTTTGTAAACTCCTTTGTTTGCCGCATCAGAAGCTGTGTCGATAACTGTCAAACACARCAACAAAAATGTAAAAACGAGAGTCAAAAGTTTGTCCTGTTCCATCTGAGGATAAAACATTATTGATAACAATTATAATATAAATCAACTTAAACTCACCGTTCTGAAAGTAGAATTAAATGTGCTGTTTGATTCAATGCACCACACACAGAAATATCAGCAATCCAACTCGCGGTGAAGTTTTCTTATCGTTTCTGCTGCACGCACTCACTTAAATTTTATTAGAGTCGTTATATTTTATGAAACATTACAGAGATCCTGGTCAACGGTGACAAAAAGTCAAAACTAAGCAAAAAAAGTTGAAAGTGATATAGTCGGTTCTTATTTTCAAGTGAAGATTTATTCCAATTAATTGGCAACGATACCGTTCAAAAACTCAAAAATAAGATTATACTAAACATATGCAAGAAATTTCACATGAAAAAAAAACTAACAATTAACAAAAACACAAGAAATCATATGTAATCACAAATAAGTATAAATTATTTCTTCCCGAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCCATATCAGTTTATGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTACTTTCAGAACGGTGAGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GCCCATATCAGTTTATGTTTTTTGATGTGAGAGTACTAGGAATGGTCATAACAAATTGTTATAGAAAGTACCCGTACTTTGTAAACTCCTTTGTTTGCCGCATCAGAAGCTGTGTCGATAACTGTCAAACACAACAACAAAAATGTAAAAACGAGAGTCAAAAGTTTGTCCTGTTCCATCTGAGGATAAAACATTATTGATAACAATTATAATATAAATCAACTTAAACTCACCGTTCTGAAAGTAG</canonical_amplicon>
		<polymorphic_amplicon>GCCCATATCAGTTTATGTTTTTTGATGTGAGAGTACTAGGAATGGTCATAACAAATTGTTATAGAAAGTACCCGTACTTTGTAAACTCCTTTGTTTGCCGCATCAGAAGCTGTGTCGATAACTGTCAAACACARCAACAAAAATGTAAAAACGAGAGTCAAAAGTTTGTCCTGTTCCATCTGAGGATAAAACATTATTGATAACAATTATAATATAAATCAACTTAAACTCACCGTTCTGAAAGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2377</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>32789</contig_pos>
        <strand>+</strand>
        <context>GTTAACATAT[A/T]AGCACAGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGAGAGCTTGAACTTTATAAGACAAAAAAGCAAACAATGGTTAACATAT</left_flank>
        <right_flank>AGCACAGTTTAGGAGCCCACGAAAAATGTCAACTTTGAGCTCAATTAGCT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATAGCCCACATTTTTTCACTTGCCCCACCCCCCCCCCCTTTTTCCCTTGGGCCCCCTCTTTTCTCATGGACCCCCTTGTCATAAAGCAGCCCCAGTTCTTTAACTTTATTGACCTTACATTAGTTCATACAAAATTATTATAACTTCTAAAAATGCTAGACTTCAGACCCAAGATTTCATTTTTGGTGTGACGTCTTCACAAATTGAATATCCATTTCAGATCTTACGAATTCTAATAATTACCCTTTAAACTAAGTACCGTAAGTGCTCTAATAGACCTTATAATTGGACCTTCGAGCCCAATTATCTTGGTTCCTATAAAAATCTTGTGCCTGATTTTCATATTTTTATTACGACATTTTAAACAACTATAGAAAACAGAATCCAGAGGTTTTATCTATTTTTAAAATCCCATTAAATTTTCATGGTGATCTTTTTCTTTTTATTTCGAGAGCTTGAACTTTATAAGACAAAAAAGCAAACAATGGTTAACATATTAGCACAGTTTAGGAGCCCACGAAAAATGTCAACTTTGAGCTCAATTAGCTCGGTTCTAGTTAAAGATATCAAAATTTTATCAACTAGTAAAACATTGCTGATAATGAGACACACATTTTATCAGTTGACAAATTTTTAAAATCTCTGATAGGAACCGAGATAATAAAATACTATTTGAACAGTTACGGTATATGTTCTGGTGTTCATTAACCCCAAAATAAATCTGTGAAATTTCGGAAAATAGTCTATGAACTCCGGTGCACATATTTACTTTGTTTCTGGAATGAAAAAGAAAGCAAATGTTTGTTTTCAATGAACTCTGCTCTTTAAAACCACACCGCTTTTTCAAAATTATCTCCAGGACCCATCTATGATGTATGGGGGTTTAAAGAAATGAAATGCGGGTGGGTGACGATGGAATTGAGATTTTTTGTTTCGGTGTTTTATATATTTGTTCTTCTGAAGGATGGGGGTTGTTGAACAGAATTTTCTTTAGTTTC</canonical>
            <polymorphic>ACATAGCCCACATTTTTTCACTTGCCCCACCCCCCCCCCCTTTTTCCCTTGGGCCCCCTCTTTTCTCATGGACCCCCTTGTCATAAAGCAGCCCCAGTTCTTTAACTTTATTGACCTTACATTAGTTCATACAAAATTATTATAACTTCTAAAAATGCTAGACTTCAGACCCAAGATTTCATTTTTGGTGTGACGTCTTCACAAATTGAATATCCATTTCAGATCTTACGAATTCTAATAATTACCCTTTAAACTAAGTACCGTAAGTGCTCTAATAGACCTTATAATTGGACCTTCGAGCCCAATTATCTTGGTTCCTATAAAAATCTTGTGCCTGATTTTCATATTTTTATTACGACATTTTAAACAACTATAGAAAACAGAATCCAGAGGTTTTATCTATTTTTAAAATCCCATTAAATTTTCATGGTGATCTTTTTCTTTTTATTTCGAGAGCTTGAACTTTATAAGACAAAAAAGCAAACAATGGTTAACATATWAGCACAGTTTAGGAGCCCACGAAAAATGTCAACTTTGAGCTCAATTAGCTCGGTTCTAGTTAAAGATATCAAAATTTTATCAACTAGTAAAACATTGCTGATAATGAGACACACATTTTATCAGTTGACAAATTTTTAAAATCTCTGATAGGAACCGAGATAATAAAATACTATTTGAACAGTTACGGTATATGTTCTGGTGTTCATTAACCCCAAAATAAATCTGTGAAATTTCGGAAAATAGTCTATGAACTCCGGTGCACATATTTACTTTGTTTCTGGAATGAAAAAGAAAGCAAATGTTTGTTTTCAATGAACTCTGCTCTTTAAAACCACACCGCTTTTTCAAAATTATCTCCAGGACCCATCTATGATGTATGGGGGTTTAAAGAAATGAAATGCGGGTGGGTGACGATGGAATTGAGATTTTTTGTTTCGGTGTTTTATATATTTGTTCTTCTGAAGGATGGGGGTTGTTGAACAGAATTTTCTTTAGTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTTCGAGAGCTTGAACTTTA</pcr_primer_p1>
		<pcr_primer_p2>ACACCAGAACATATACCGTAACT</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>TTATTTCGAGAGCTTGAACTTTATAAGACAAAAAAGCAAACAATGGTTAACATATTAGCACAGTTTAGGAGCCCACGAAAAATGTCAACTTTGAGCTCAATTAGCTCGGTTCTAGTTAAAGATATCAAAATTTTATCAACTAGTAAAACATTGCTGATAATGAGACACACATTTTATCAGTTGACAAATTTTTAAAATCTCTGATAGGAACCGAGATAATAAAATACTATTTGAACAGTTACGGTATATGTTCTGGTGT</canonical_amplicon>
		<polymorphic_amplicon>TTATTTCGAGAGCTTGAACTTTATAAGACAAAAAAGCAAACAATGGTTAACATATWAGCACAGTTTAGGAGCCCACGAAAAATGTCAACTTTGAGCTCAATTAGCTCGGTTCTAGTTAAAGATATCAAAATTTTATCAACTAGTAAAACATTGCTGATAATGAGACACACATTTTATCAGTTGACAAATTTTTAAAATCTCTGATAGGAACCGAGATAATAAAATACTATTTGAACAGTTACGGTATATGTTCTGGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2378</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>32956</contig_pos>
        <strand>+</strand>
        <context>gagataaTAA[A/G]ATMCTATTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTATCAGTTGACAAATTTTTAAAATCTCTGATAGGAACCGAGATAATAA</left_flank>
        <right_flank>ATACTATTTGAACAGTTACGGTATATGTTCTGGTGTTCATTAACCCCAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACCCAAGATTTCATTTTTGGTGTGACGTCTTCACAAATTGAATATCCATTTCAGATCTTACGAATTCTAATAATTACCCTTTAAACTAAGTACCGTAAGTGCTCTAATAGACCTTATAATTGGACCTTCGAGCCCAATTATCTTGGTTCCTATAAAAATCTTGTGCCTGATTTTCATATTTTTATTACGACATTTTAAACAACTATAGAAAACAGAATCCAGAGGTTTTATCTATTTTTAAAATCCCATTAAATTTTCATGGTGATCTTTTTCTTTTTATTTCGAGAGCTTGAACTTTATAAGACAAAAAAGCAAACAATGGTTAACATATTAGCACAGTTTAGGAGCCCACGAAAAATGTCAACTTTGAGCTCAATTAGCTCGGTTCTAGTTAAAGATATCAAAATTTTATCAACTAGTAAAACATTGCTGATAATGAGACACACATTTTATCAGTTGACAAATTTTTAAAATCTCTGATAGGAACCGAGATAATAAAATACTATTTGAACAGTTACGGTATATGTTCTGGTGTTCATTAACCCCAAAATAAATCTGTGAAATTTCGGAAAATAGTCTATGAACTCCGGTGCACATATTTACTTTGTTTCTGGAATGAAAAAGAAAGCAAATGTTTGTTTTCAATGAACTCTGCTCTTTAAAACCACACCGCTTTTTCAAAATTATCTCCAGGACCCATCTATGATGTATGGGGGTTTAAAGAAATGAAATGCGGGTGGGTGACGATGGAATTGAGATTTTTTGTTTCGGTGTTTTATATATTTGTTCTTCTGAAGGATGGGGGTTGTTGAACAGAATTTTCTTTAGTTTCAGAACTTAAAAAATGAATTTATTATTGAAAAAATGTTACTTAAAGATATGTCCAAAGTTACAAAATTCGAGTAAAAGGGAAATTCGAAAAATTCCTCTCCACTTTCCGGATCTATGAACATTCAAAGTTTGAACTTGGAACACTTTCAAGTAATTCATAACTTATTC</canonical>
            <polymorphic>GACCCAAGATTTCATTTTTGGTGTGACGTCTTCACAAATTGAATATCCATTTCAGATCTTACGAATTCTAATAATTACCCTTTAAACTAAGTACCGTAAGTGCTCTAATAGACCTTATAATTGGACCTTCGAGCCCAATTATCTTGGTTCCTATAAAAATCTTGTGCCTGATTTTCATATTTTTATTACGACATTTTAAACAACTATAGAAAACAGAATCCAGAGGTTTTATCTATTTTTAAAATCCCATTAAATTTTCATGGTGATCTTTTTCTTTTTATTTCGAGAGCTTGAACTTTATAAGACAAAAAAGCAAACAATGGTTAACATATTAGCACAGTTTAGGAGCCCACGAAAAATGTCAACTTTGAGCTCAATTAGCTCGGTTCTAGTTAAAGATATCAAAATTTTATCAACTAGTAAAACATTGCTGATAATGAGACACACATTTTATCAGTTGACAAATTTTTAAAATCTCTGATAGGAACCGAGATAATAARATACTATTTGAACAGTTACGGTATATGTTCTGGTGTTCATTAACCCCAAAATAAATCTGTGAAATTTCGGAAAATAGTCTATGAACTCCGGTGCACATATTTACTTTGTTTCTGGAATGAAAAAGAAAGCAAATGTTTGTTTTCAATGAACTCTGCTCTTTAAAACCACACCGCTTTTTCAAAATTATCTCCAGGACCCATCTATGATGTATGGGGGTTTAAAGAAATGAAATGCGGGTGGGTGACGATGGAATTGAGATTTTTTGTTTCGGTGTTTTATATATTTGTTCTTCTGAAGGATGGGGGTTGTTGAACAGAATTTTCTTTAGTTTCAGAACTTAAAAAATGAATTTATTATTGAAAAAATGTTACTTAAAGATATGTCCAAAGTTACAAAATTCGAGTAAAAGGGAAATTCGAAAAATTCCTCTCCACTTTCCGGATCTATGAACATTCAAAGTTTGAACTTGGAACACTTTCAAGTAATTCATAACTTATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGAGCTTGAACTTTATAAGAC</pcr_primer_p1>
		<pcr_primer_p2>CAGATTTATTTTGGGGTTAATG</pcr_primer_p2>
		<pcr_amplicon_size>276</pcr_amplicon_size>
		<canonical_amplicon>CGAGAGCTTGAACTTTATAAGACAAAAAAGCAAACAATGGTTAACATATTAGCACAGTTTAGGAGCCCACGAAAAATGTCAACTTTGAGCTCAATTAGCTCGGTTCTAGTTAAAGATATCAAAATTTTATCAACTAGTAAAACATTGCTGATAATGAGACACACATTTTATCAGTTGACAAATTTTTAAAATCTCTGATAGGAACCGAGATAATAAAATACTATTTGAACAGTTACGGTATATGTTCTGGTGTTCATTAACCCCAAAATAAATCTG</canonical_amplicon>
		<polymorphic_amplicon>CGAGAGCTTGAACTTTATAAGACAAAAAAGCAAACAATGGTTAACATATTAGCACAGTTTAGGAGCCCACGAAAAATGTCAACTTTGAGCTCAATTAGCTCGGTTCTAGTTAAAGATATCAAAATTTTATCAACTAGTAAAACATTGCTGATAATGAGACACACATTTTATCAGTTGACAAATTTTTAAAATCTCTGATAGGAACCGAGATAATAARATACTATTTGAACAGTTACGGTATATGTTCTGGTGTTCATTAACCCCAAAATAAATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2379</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>32959</contig_pos>
        <strand>+</strand>
        <context>ataaTAARAT[A/C]CTATTTGAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCAGTTGACAAATTTTTAAAATCTCTGATAGGAACCGAGATAATAAAAT</left_flank>
        <right_flank>CTATTTGAACAGTTACGGTATATGTTCTGGTGTTCATTAACCCCAAAATA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAGATTTCATTTTTGGTGTGACGTCTTCACAAATTGAATATCCATTTCAGATCTTACGAATTCTAATAATTACCCTTTAAACTAAGTACCGTAAGTGCTCTAATAGACCTTATAATTGGACCTTCGAGCCCAATTATCTTGGTTCCTATAAAAATCTTGTGCCTGATTTTCATATTTTTATTACGACATTTTAAACAACTATAGAAAACAGAATCCAGAGGTTTTATCTATTTTTAAAATCCCATTAAATTTTCATGGTGATCTTTTTCTTTTTATTTCGAGAGCTTGAACTTTATAAGACAAAAAAGCAAACAATGGTTAACATATTAGCACAGTTTAGGAGCCCACGAAAAATGTCAACTTTGAGCTCAATTAGCTCGGTTCTAGTTAAAGATATCAAAATTTTATCAACTAGTAAAACATTGCTGATAATGAGACACACATTTTATCAGTTGACAAATTTTTAAAATCTCTGATAGGAACCGAGATAATAAAATACTATTTGAACAGTTACGGTATATGTTCTGGTGTTCATTAACCCCAAAATAAATCTGTGAAATTTCGGAAAATAGTCTATGAACTCCGGTGCACATATTTACTTTGTTTCTGGAATGAAAAAGAAAGCAAATGTTTGTTTTCAATGAACTCTGCTCTTTAAAACCACACCGCTTTTTCAAAATTATCTCCAGGACCCATCTATGATGTATGGGGGTTTAAAGAAATGAAATGCGGGTGGGTGACGATGGAATTGAGATTTTTTGTTTCGGTGTTTTATATATTTGTTCTTCTGAAGGATGGGGGTTGTTGAACAGAATTTTCTTTAGTTTCAGAACTTAAAAAATGAATTTATTATTGAAAAAATGTTACTTAAAGATATGTCCAAAGTTACAAAATTCGAGTAAAAGGGAAATTCGAAAAATTCCTCTCCACTTTCCGGATCTATGAACATTCAAAGTTTGAACTTGGAACACTTTCAAGTAATTCATAACTTATTCCGG</canonical>
            <polymorphic>CCAAGATTTCATTTTTGGTGTGACGTCTTCACAAATTGAATATCCATTTCAGATCTTACGAATTCTAATAATTACCCTTTAAACTAAGTACCGTAAGTGCTCTAATAGACCTTATAATTGGACCTTCGAGCCCAATTATCTTGGTTCCTATAAAAATCTTGTGCCTGATTTTCATATTTTTATTACGACATTTTAAACAACTATAGAAAACAGAATCCAGAGGTTTTATCTATTTTTAAAATCCCATTAAATTTTCATGGTGATCTTTTTCTTTTTATTTCGAGAGCTTGAACTTTATAAGACAAAAAAGCAAACAATGGTTAACATATTAGCACAGTTTAGGAGCCCACGAAAAATGTCAACTTTGAGCTCAATTAGCTCGGTTCTAGTTAAAGATATCAAAATTTTATCAACTAGTAAAACATTGCTGATAATGAGACACACATTTTATCAGTTGACAAATTTTTAAAATCTCTGATAGGAACCGAGATAATAAAATMCTATTTGAACAGTTACGGTATATGTTCTGGTGTTCATTAACCCCAAAATAAATCTGTGAAATTTCGGAAAATAGTCTATGAACTCCGGTGCACATATTTACTTTGTTTCTGGAATGAAAAAGAAAGCAAATGTTTGTTTTCAATGAACTCTGCTCTTTAAAACCACACCGCTTTTTCAAAATTATCTCCAGGACCCATCTATGATGTATGGGGGTTTAAAGAAATGAAATGCGGGTGGGTGACGATGGAATTGAGATTTTTTGTTTCGGTGTTTTATATATTTGTTCTTCTGAAGGATGGGGGTTGTTGAACAGAATTTTCTTTAGTTTCAGAACTTAAAAAATGAATTTATTATTGAAAAAATGTTACTTAAAGATATGTCCAAAGTTACAAAATTCGAGTAAAAGGGAAATTCGAAAAATTCCTCTCCACTTTCCGGATCTATGAACATTCAAAGTTTGAACTTGGAACACTTTCAAGTAATTCATAACTTATTCCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGAGCTTGAACTTTATAAGAC</pcr_primer_p1>
		<pcr_primer_p2>CAGATTTATTTTGGGGTTAATG</pcr_primer_p2>
		<pcr_amplicon_size>276</pcr_amplicon_size>
		<canonical_amplicon>CGAGAGCTTGAACTTTATAAGACAAAAAAGCAAACAATGGTTAACATATTAGCACAGTTTAGGAGCCCACGAAAAATGTCAACTTTGAGCTCAATTAGCTCGGTTCTAGTTAAAGATATCAAAATTTTATCAACTAGTAAAACATTGCTGATAATGAGACACACATTTTATCAGTTGACAAATTTTTAAAATCTCTGATAGGAACCGAGATAATAAAATACTATTTGAACAGTTACGGTATATGTTCTGGTGTTCATTAACCCCAAAATAAATCTG</canonical_amplicon>
		<polymorphic_amplicon>CGAGAGCTTGAACTTTATAAGACAAAAAAGCAAACAATGGTTAACATATTAGCACAGTTTAGGAGCCCACGAAAAATGTCAACTTTGAGCTCAATTAGCTCGGTTCTAGTTAAAGATATCAAAATTTTATCAACTAGTAAAACATTGCTGATAATGAGACACACATTTTATCAGTTGACAAATTTTTAAAATCTCTGATAGGAACCGAGATAATAAAATMCTATTTGAACAGTTACGGTATATGTTCTGGTGTTCATTAACCCCAAAATAAATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2380</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>35761</contig_pos>
        <strand>+</strand>
        <context>GGAATTGGGG[A/G]TTTGATGGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCAGAGAGAGAGAAAGGATAGGAGAATGGATTTTCTTCGGAATTGGGG</left_flank>
        <right_flank>TTTGATGGAACAGCCAAAGTGCGATTGACAGATAAATAGAGATAAAAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTCAGTGAAGTTTAATCCCAAAACATTTTCATCTCATAATCGAGTTTTCGTAATAAAGAGAATCGAATCTCAAAAAAGAGGAAGGTATTAGCCTAACTGGCTCTGGGAATTGCCGCAGCGGTTGTAAAAACTATTATTCCCCGTTTTCCAACCAATTTATCTGATGAAAACTTGTTTACTATGTCTTCATTCTTCCTTCAAAAAATGGATGGATGGGAGAAGAGAATAACCATTAAGGAATTTGATTTATCCTTTTCGACTCCTTTTTTTTCGACTTGGTGGCTCCAGGGGTTTCTGAAATTTTTAGACTGAAGTAACTGAAAACTGAGAAACGTTGGAAGCTGTTTTATTTTTTCAACAGAAGAAATAGTATGGGAAGAAACGGAAAAAAAAGTCAGTTTTAACAATGTTTCTGCAGCGTTTTCAGGGGGAAATTTTCAGAGATTTTCAGAGAGAGAGAAAGGATAGGAGAATGGATTTTCTTCGGAATTGGGGATTTGATGGAACAGCCAAAGTGCGATTGACAGATAAATAGAGATAAAAGAGGAGAAAGAAGAACAGGATGAGGATGATGTTGCAGCATTATCCGAAGCGAAGAGGGCGCGGACCGAGGCCTCGTTTTATCGATCTGAAACTGTAAATGGGGTCAGAATGGGTTACATGGGGCTTACTGCTTTTAGAAAACTATGGACCCTAGGTTCCATGGATCCTAAACTCTTTAGATTCCTGGATTCCTGGATTCCTGGATTCCTGGATTCCTGGATTTCTGGATTTCTGGATTTCTGGATTTCTGGATTCCTGGATCCCTGGATCCCTGGATTCCTGGATTCCTGGATTCCTGGATTCCTGGATTCCTGGTTTCCTGGTTTCCTGGTTTCCTGGATTCCTAGTTTCCTGGATTCCTGGATTCCTGGTTTTCCTGGATTCCTGGATTCCTGGATTCCTGGATTTCTGGATTTCTGGATTCCTGGATTCCTGGATTCCTGGATCCAAGGG</canonical>
            <polymorphic>AATTTTCAGTGAAGTTTAATCCCAAAACATTTTCATCTCATAATCGAGTTTTCGTAATAAAGAGAATCGAATCTCAAAAAAGAGGAAGGTATTAGCCTAACTGGCTCTGGGAATTGCCGCAGCGGTTGTAAAAACTATTATTCCCCGTTTTCCAACCAATTTATCTGATGAAAACTTGTTTACTATGTCTTCATTCTTCCTTCAAAAAATGGATGGATGGGAGAAGAGAATAACCATTAAGGAATTTGATTTATCCTTTTCGACTCCTTTTTTTTCGACTTGGTGGCTCCAGGGGTTTCTGAAATTTTTAGACTGAAGTAACTGAAAACTGAGAAACGTTGGAAGCTGTTTTATTTTTTCAACAGAAGAAATAGTATGGGAAGAAACGGAAAAAAAAGTCAGTTTTAACAATGTTTCTGCAGCGTTTTCAGGGGGAAATTTTCAGAGATTTTCAGAGAGAGAGAAAGGATAGGAGAATGGATTTTCTTCGGAATTGGGGRTTTGATGGAACAGCCAAAGTGCGATTGACAGATAAATAGAGATAAAAGAGGAGAAAGAAGAACAGGATGAGGATGATGTTGCAGCATTATCCGAAGCGAAGAGGGCGCGGACCGAGGCCTCGTTTTATCGATCTGAAACTGTAAATGGGGTCAGAATGGGTTACATGGGGCTTACTGCTTTTAGAAAACTATGGACCCTAGGTTCCATGGATCCTAAACTCTTTAGATTCCTGGATTCCTGGATTCCTGGATTCCTGGATTCCTGGATTTCTGGATTTCTGGATTTCTGGATTTCTGGATTCCTGGATCCCTGGATCCCTGGATTCCTGGATTCCTGGATTCCTGGATTCCTGGATTCCTGGTTTCCTGGTTTCCTGGTTTCCTGGATTCCTAGTTTCCTGGATTCCTGGATTCCTGGTTTTCCTGGATTCCTGGATTCCTGGATTCCTGGATTTCTGGATTTCTGGATTCCTGGATTCCTGGATTCCTGGATCCAAGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGTAACTGAAAACTGAGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TGTTCTTCTTTCTCCTCTTTTATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGAAGTAACTGAAAACTGAGAAACGTTGGAAGCTGTTTTATTTTTTCAACAGAAGAAATAGTATGGGAAGAAACGGAAAAAAAAGTCAGTTTTAACAATGTTTCTGCAGCGTTTTCAGGGGGAAATTTTCAGAGATTTTCAGAGAGAGAGAAAGGATAGGAGAATGGATTTTCTTCGGAATTGGGGATTTGATGGAACAGCCAAAGTGCGATTGACAGATAAATAGAGATAAAAGAGGAGAAAGAAGAACA</canonical_amplicon>
		<polymorphic_amplicon>TGAAGTAACTGAAAACTGAGAAACGTTGGAAGCTGTTTTATTTTTTCAACAGAAGAAATAGTATGGGAAGAAACGGAAAAAAAAGTCAGTTTTAACAATGTTTCTGCAGCGTTTTCAGGGGGAAATTTTCAGAGATTTTCAGAGAGAGAGAAAGGATAGGAGAATGGATTTTCTTCGGAATTGGGGRTTTGATGGAACAGCCAAAGTGCGATTGACAGATAAATAGAGATAAAAGAGGAGAAAGAAGAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2381</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>35525</contig_pos>
        <strand>+</strand>
        <context>TCCTTTTCGA[C/T]TCCTTTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGATGGGAGAAGAGAATAACCATTAAGGAATTTGATTTATCCTTTTCGA</left_flank>
        <right_flank>TCCTTTTTTTTCGACTTGGTGGCTCCAGGGGTTTCTGAAATTTTTAGACT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTGATTGACCATTTTTTTGATATCTGCTACAGTAACCGAGATAAACTGGATCAAAGTAAAAATTAATTTAGGAACAGAGTCTTCCCACTATTAACTTTAACTCAGTTTATCTCGGTTACTGTAACAGATATCAAGAAGTAATCAACTAATAAAATATTGCTCATGTTATGATAAATATTTGATTCGTTGACAACGTTTTGATAGCTTGTACAGGGATCGAGATATACAGACTCAAATTTTCAGTGAAGTTTAATCCCAAAACATTTTCATCTCATAATCGAGTTTTCGTAATAAAGAGAATCGAATCTCAAAAAAGAGGAAGGTATTAGCCTAACTGGCTCTGGGAATTGCCGCAGCGGTTGTAAAAACTATTATTCCCCGTTTTCCAACCAATTTATCTGATGAAAACTTGTTTACTATGTCTTCATTCTTCCTTCAAAAAATGGATGGATGGGAGAAGAGAATAACCATTAAGGAATTTGATTTATCCTTTTCGACTCCTTTTTTTTCGACTTGGTGGCTCCAGGGGTTTCTGAAATTTTTAGACTGAAGTAACTGAAAACTGAGAAACGTTGGAAGCTGTTTTATTTTTTCAACAGAAGAAATAGTATGGGAAGAAACGGAAAAAAAAGTCAGTTTTAACAATGTTTCTGCAGCGTTTTCAGGGGGAAATTTTCAGAGATTTTCAGAGAGAGAGAAAGGATAGGAGAATGGATTTTCTTCGGAATTGGGGATTTGATGGAACAGCCAAAGTGCGATTGACAGATAAATAGAGATAAAAGAGGAGAAAGAAGAACAGGATGAGGATGATGTTGCAGCATTATCCGAAGCGAAGAGGGCGCGGACCGAGGCCTCGTTTTATCGATCTGAAACTGTAAATGGGGTCAGAATGGGTTACATGGGGCTTACTGCTTTTAGAAAACTATGGACCCTAGGTTCCATGGATCCTAAACTCTTTAGATTCCTGGATTCCTGGATTCCTGGATTCCTGGATTCCT</canonical>
            <polymorphic>TATTGATTGACCATTTTTTTGATATCTGCTACAGTAACCGAGATAAACTGGATCAAAGTAAAAATTAATTTAGGAACAGAGTCTTCCCACTATTAACTTTAACTCAGTTTATCTCGGTTACTGTAACAGATATCAAGAAGTAATCAACTAATAAAATATTGCTCATGTTATGATAAATATTTGATTCGTTGACAACGTTTTGATAGCTTGTACAGGGATCGAGATATACAGACTCAAATTTTCAGTGAAGTTTAATCCCAAAACATTTTCATCTCATAATCGAGTTTTCGTAATAAAGAGAATCGAATCTCAAAAAAGAGGAAGGTATTAGCCTAACTGGCTCTGGGAATTGCCGCAGCGGTTGTAAAAACTATTATTCCCCGTTTTCCAACCAATTTATCTGATGAAAACTTGTTTACTATGTCTTCATTCTTCCTTCAAAAAATGGATGGATGGGAGAAGAGAATAACCATTAAGGAATTTGATTTATCCTTTTCGAYTCCTTTTTTTTCGACTTGGTGGCTCCAGGGGTTTCTGAAATTTTTAGACTGAAGTAACTGAAAACTGAGAAACGTTGGAAGCTGTTTTATTTTTTCAACAGAAGAAATAGTATGGGAAGAAACGGAAAAAAAAGTCAGTTTTAACAATGTTTCTGCAGCGTTTTCAGGGGGAAATTTTCAGAGATTTTCAGAGAGAGAGAAAGGATAGGAGAATGGATTTTCTTCGGAATTGGGGATTTGATGGAACAGCCAAAGTGCGATTGACAGATAAATAGAGATAAAAGAGGAGAAAGAAGAACAGGATGAGGATGATGTTGCAGCATTATCCGAAGCGAAGAGGGCGCGGACCGAGGCCTCGTTTTATCGATCTGAAACTGTAAATGGGGTCAGAATGGGTTACATGGGGCTTACTGCTTTTAGAAAACTATGGACCCTAGGTTCCATGGATCCTAAACTCTTTAGATTCCTGGATTCCTGGATTCCTGGATTCCTGGATTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAAACTATTATTCCCCGTTTT</pcr_primer_p1>
		<pcr_primer_p2>CCCATACTATTTCTTCTGTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAAAAACTATTATTCCCCGTTTTCCAACCAATTTATCTGATGAAAACTTGTTTACTATGTCTTCATTCTTCCTTCAAAAAATGGATGGATGGGAGAAGAGAATAACCATTAAGGAATTTGATTTATCCTTTTCGACTCCTTTTTTTTCGACTTGGTGGCTCCAGGGGTTTCTGAAATTTTTAGACTGAAGTAACTGAAAACTGAGAAACGTTGGAAGCTGTTTTATTTTTTCAACAGAAGAAATAGTATGGG</canonical_amplicon>
		<polymorphic_amplicon>TAAAAACTATTATTCCCCGTTTTCCAACCAATTTATCTGATGAAAACTTGTTTACTATGTCTTCATTCTTCCTTCAAAAAATGGATGGATGGGAGAAGAGAATAACCATTAAGGAATTTGATTTATCCTTTTCGAYTCCTTTTTTTTCGACTTGGTGGCTCCAGGGGTTTCTGAAATTTTTAGACTGAAGTAACTGAAAACTGAGAAACGTTGGAAGCTGTTTTATTTTTTCAACAGAAGAAATAGTATGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2382</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>35514</contig_pos>
        <strand>+</strand>
        <context>AATTTGATTT[A/T]TCCTTTTCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAAAAATGGATGGATGGGAGAAGAGAATAACCATTAAGGAATTTGATTT</left_flank>
        <right_flank>TCCTTTTCGACTCCTTTTTTTTCGACTTGGTGGCTCCAGGGGTTTCTGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCAACATTTTATTGATTGACCATTTTTTTGATATCTGCTACAGTAACCGAGATAAACTGGATCAAAGTAAAAATTAATTTAGGAACAGAGTCTTCCCACTATTAACTTTAACTCAGTTTATCTCGGTTACTGTAACAGATATCAAGAAGTAATCAACTAATAAAATATTGCTCATGTTATGATAAATATTTGATTCGTTGACAACGTTTTGATAGCTTGTACAGGGATCGAGATATACAGACTCAAATTTTCAGTGAAGTTTAATCCCAAAACATTTTCATCTCATAATCGAGTTTTCGTAATAAAGAGAATCGAATCTCAAAAAAGAGGAAGGTATTAGCCTAACTGGCTCTGGGAATTGCCGCAGCGGTTGTAAAAACTATTATTCCCCGTTTTCCAACCAATTTATCTGATGAAAACTTGTTTACTATGTCTTCATTCTTCCTTCAAAAAATGGATGGATGGGAGAAGAGAATAACCATTAAGGAATTTGATTTATCCTTTTCGACTCCTTTTTTTTCGACTTGGTGGCTCCAGGGGTTTCTGAAATTTTTAGACTGAAGTAACTGAAAACTGAGAAACGTTGGAAGCTGTTTTATTTTTTCAACAGAAGAAATAGTATGGGAAGAAACGGAAAAAAAAGTCAGTTTTAACAATGTTTCTGCAGCGTTTTCAGGGGGAAATTTTCAGAGATTTTCAGAGAGAGAGAAAGGATAGGAGAATGGATTTTCTTCGGAATTGGGGATTTGATGGAACAGCCAAAGTGCGATTGACAGATAAATAGAGATAAAAGAGGAGAAAGAAGAACAGGATGAGGATGATGTTGCAGCATTATCCGAAGCGAAGAGGGCGCGGACCGAGGCCTCGTTTTATCGATCTGAAACTGTAAATGGGGTCAGAATGGGTTACATGGGGCTTACTGCTTTTAGAAAACTATGGACCCTAGGTTCCATGGATCCTAAACTCTTTAGATTCCTGGATTCCTGGATTCCTGGATT</canonical>
            <polymorphic>CAGCAACATTTTATTGATTGACCATTTTTTTGATATCTGCTACAGTAACCGAGATAAACTGGATCAAAGTAAAAATTAATTTAGGAACAGAGTCTTCCCACTATTAACTTTAACTCAGTTTATCTCGGTTACTGTAACAGATATCAAGAAGTAATCAACTAATAAAATATTGCTCATGTTATGATAAATATTTGATTCGTTGACAACGTTTTGATAGCTTGTACAGGGATCGAGATATACAGACTCAAATTTTCAGTGAAGTTTAATCCCAAAACATTTTCATCTCATAATCGAGTTTTCGTAATAAAGAGAATCGAATCTCAAAAAAGAGGAAGGTATTAGCCTAACTGGCTCTGGGAATTGCCGCAGCGGTTGTAAAAACTATTATTCCCCGTTTTCCAACCAATTTATCTGATGAAAACTTGTTTACTATGTCTTCATTCTTCCTTCAAAAAATGGATGGATGGGAGAAGAGAATAACCATTAAGGAATTTGATTTWTCCTTTTCGACTCCTTTTTTTTCGACTTGGTGGCTCCAGGGGTTTCTGAAATTTTTAGACTGAAGTAACTGAAAACTGAGAAACGTTGGAAGCTGTTTTATTTTTTCAACAGAAGAAATAGTATGGGAAGAAACGGAAAAAAAAGTCAGTTTTAACAATGTTTCTGCAGCGTTTTCAGGGGGAAATTTTCAGAGATTTTCAGAGAGAGAGAAAGGATAGGAGAATGGATTTTCTTCGGAATTGGGGATTTGATGGAACAGCCAAAGTGCGATTGACAGATAAATAGAGATAAAAGAGGAGAAAGAAGAACAGGATGAGGATGATGTTGCAGCATTATCCGAAGCGAAGAGGGCGCGGACCGAGGCCTCGTTTTATCGATCTGAAACTGTAAATGGGGTCAGAATGGGTTACATGGGGCTTACTGCTTTTAGAAAACTATGGACCCTAGGTTCCATGGATCCTAAACTCTTTAGATTCCTGGATTCCTGGATTCCTGGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAAACTATTATTCCCCGTTTT</pcr_primer_p1>
		<pcr_primer_p2>CCCATACTATTTCTTCTGTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAAAAACTATTATTCCCCGTTTTCCAACCAATTTATCTGATGAAAACTTGTTTACTATGTCTTCATTCTTCCTTCAAAAAATGGATGGATGGGAGAAGAGAATAACCATTAAGGAATTTGATTTATCCTTTTCGACTCCTTTTTTTTCGACTTGGTGGCTCCAGGGGTTTCTGAAATTTTTAGACTGAAGTAACTGAAAACTGAGAAACGTTGGAAGCTGTTTTATTTTTTCAACAGAAGAAATAGTATGGG</canonical_amplicon>
		<polymorphic_amplicon>TAAAAACTATTATTCCCCGTTTTCCAACCAATTTATCTGATGAAAACTTGTTTACTATGTCTTCATTCTTCCTTCAAAAAATGGATGGATGGGAGAAGAGAATAACCATTAAGGAATTTGATTTWTCCTTTTCGACTCCTTTTTTTTCGACTTGGTGGCTCCAGGGGTTTCTGAAATTTTTAGACTGAAGTAACTGAAAACTGAGAAACGTTGGAAGCTGTTTTATTTTTTCAACAGAAGAAATAGTATGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2383</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>35473</contig_pos>
        <strand>+</strand>
        <context>TCAAAAAATG[A/G]ATGGATGGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATCTGATGAAAACTTGTTTACTATGTCTTCATTCTTCCTTCAAAAAATG</left_flank>
        <right_flank>ATGGATGGGAGAAGAGAATAACCATTAAGGAATTTGATTTATCCTTTTCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCAAAAAATGGTCAATTGACAAAATGCTTATCATAATACCAGCAACATTTTATTGATTGACCATTTTTTTGATATCTGCTACAGTAACCGAGATAAACTGGATCAAAGTAAAAATTAATTTAGGAACAGAGTCTTCCCACTATTAACTTTAACTCAGTTTATCTCGGTTACTGTAACAGATATCAAGAAGTAATCAACTAATAAAATATTGCTCATGTTATGATAAATATTTGATTCGTTGACAACGTTTTGATAGCTTGTACAGGGATCGAGATATACAGACTCAAATTTTCAGTGAAGTTTAATCCCAAAACATTTTCATCTCATAATCGAGTTTTCGTAATAAAGAGAATCGAATCTCAAAAAAGAGGAAGGTATTAGCCTAACTGGCTCTGGGAATTGCCGCAGCGGTTGTAAAAACTATTATTCCCCGTTTTCCAACCAATTTATCTGATGAAAACTTGTTTACTATGTCTTCATTCTTCCTTCAAAAAATGGATGGATGGGAGAAGAGAATAACCATTAAGGAATTTGATTTATCCTTTTCGACTCCTTTTTTTTCGACTTGGTGGCTCCAGGGGTTTCTGAAATTTTTAGACTGAAGTAACTGAAAACTGAGAAACGTTGGAAGCTGTTTTATTTTTTCAACAGAAGAAATAGTATGGGAAGAAACGGAAAAAAAAGTCAGTTTTAACAATGTTTCTGCAGCGTTTTCAGGGGGAAATTTTCAGAGATTTTCAGAGAGAGAGAAAGGATAGGAGAATGGATTTTCTTCGGAATTGGGGATTTGATGGAACAGCCAAAGTGCGATTGACAGATAAATAGAGATAAAAGAGGAGAAAGAAGAACAGGATGAGGATGATGTTGCAGCATTATCCGAAGCGAAGAGGGCGCGGACCGAGGCCTCGTTTTATCGATCTGAAACTGTAAATGGGGTCAGAATGGGTTACATGGGGCTTACTGCTTTTAGAAAACTATGGACCCTAGGTTCCATGGAT</canonical>
            <polymorphic>TATCAAAAAATGGTCAATTGACAAAATGCTTATCATAATACCAGCAACATTTTATTGATTGACCATTTTTTTGATATCTGCTACAGTAACCGAGATAAACTGGATCAAAGTAAAAATTAATTTAGGAACAGAGTCTTCCCACTATTAACTTTAACTCAGTTTATCTCGGTTACTGTAACAGATATCAAGAAGTAATCAACTAATAAAATATTGCTCATGTTATGATAAATATTTGATTCGTTGACAACGTTTTGATAGCTTGTACAGGGATCGAGATATACAGACTCAAATTTTCAGTGAAGTTTAATCCCAAAACATTTTCATCTCATAATCGAGTTTTCGTAATAAAGAGAATCGAATCTCAAAAAAGAGGAAGGTATTAGCCTAACTGGCTCTGGGAATTGCCGCAGCGGTTGTAAAAACTATTATTCCCCGTTTTCCAACCAATTTATCTGATGAAAACTTGTTTACTATGTCTTCATTCTTCCTTCAAAAAATGRATGGATGGGAGAAGAGAATAACCATTAAGGAATTTGATTTATCCTTTTCGACTCCTTTTTTTTCGACTTGGTGGCTCCAGGGGTTTCTGAAATTTTTAGACTGAAGTAACTGAAAACTGAGAAACGTTGGAAGCTGTTTTATTTTTTCAACAGAAGAAATAGTATGGGAAGAAACGGAAAAAAAAGTCAGTTTTAACAATGTTTCTGCAGCGTTTTCAGGGGGAAATTTTCAGAGATTTTCAGAGAGAGAGAAAGGATAGGAGAATGGATTTTCTTCGGAATTGGGGATTTGATGGAACAGCCAAAGTGCGATTGACAGATAAATAGAGATAAAAGAGGAGAAAGAAGAACAGGATGAGGATGATGTTGCAGCATTATCCGAAGCGAAGAGGGCGCGGACCGAGGCCTCGTTTTATCGATCTGAAACTGTAAATGGGGTCAGAATGGGTTACATGGGGCTTACTGCTTTTAGAAAACTATGGACCCTAGGTTCCATGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAAACTATTATTCCCCGTTTT</pcr_primer_p1>
		<pcr_primer_p2>CCCATACTATTTCTTCTGTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAAAAACTATTATTCCCCGTTTTCCAACCAATTTATCTGATGAAAACTTGTTTACTATGTCTTCATTCTTCCTTCAAAAAATGGATGGATGGGAGAAGAGAATAACCATTAAGGAATTTGATTTATCCTTTTCGACTCCTTTTTTTTCGACTTGGTGGCTCCAGGGGTTTCTGAAATTTTTAGACTGAAGTAACTGAAAACTGAGAAACGTTGGAAGCTGTTTTATTTTTTCAACAGAAGAAATAGTATGGG</canonical_amplicon>
		<polymorphic_amplicon>TAAAAACTATTATTCCCCGTTTTCCAACCAATTTATCTGATGAAAACTTGTTTACTATGTCTTCATTCTTCCTTCAAAAAATGRATGGATGGGAGAAGAGAATAACCATTAAGGAATTTGATTTATCCTTTTCGACTCCTTTTTTTTCGACTTGGTGGCTCCAGGGGTTTCTGAAATTTTTAGACTGAAGTAACTGAAAACTGAGAAACGTTGGAAGCTGTTTTATTTTTTCAACAGAAGAAATAGTATGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2384</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>35434</contig_pos>
        <strand>+</strand>
        <context>ATCTGATGAA[A/T]ACTTGTTTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGGTTGTAAAAACTATTATTCCCCGTTTTCCAACCAATTTATCTGATGAA</left_flank>
        <right_flank>ACTTGTTTACTATGTCTTCATTCTTCCTTCAAAAAATGGATGGATGGGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTGCTTCGAGCCAATTTATCTCGGTCCTTGTGAAAGATATCAAAAAATGGTCAATTGACAAAATGCTTATCATAATACCAGCAACATTTTATTGATTGACCATTTTTTTGATATCTGCTACAGTAACCGAGATAAACTGGATCAAAGTAAAAATTAATTTAGGAACAGAGTCTTCCCACTATTAACTTTAACTCAGTTTATCTCGGTTACTGTAACAGATATCAAGAAGTAATCAACTAATAAAATATTGCTCATGTTATGATAAATATTTGATTCGTTGACAACGTTTTGATAGCTTGTACAGGGATCGAGATATACAGACTCAAATTTTCAGTGAAGTTTAATCCCAAAACATTTTCATCTCATAATCGAGTTTTCGTAATAAAGAGAATCGAATCTCAAAAAAGAGGAAGGTATTAGCCTAACTGGCTCTGGGAATTGCCGCAGCGGTTGTAAAAACTATTATTCCCCGTTTTCCAACCAATTTATCTGATGAAAACTTGTTTACTATGTCTTCATTCTTCCTTCAAAAAATGGATGGATGGGAGAAGAGAATAACCATTAAGGAATTTGATTTATCCTTTTCGACTCCTTTTTTTTCGACTTGGTGGCTCCAGGGGTTTCTGAAATTTTTAGACTGAAGTAACTGAAAACTGAGAAACGTTGGAAGCTGTTTTATTTTTTCAACAGAAGAAATAGTATGGGAAGAAACGGAAAAAAAAGTCAGTTTTAACAATGTTTCTGCAGCGTTTTCAGGGGGAAATTTTCAGAGATTTTCAGAGAGAGAGAAAGGATAGGAGAATGGATTTTCTTCGGAATTGGGGATTTGATGGAACAGCCAAAGTGCGATTGACAGATAAATAGAGATAAAAGAGGAGAAAGAAGAACAGGATGAGGATGATGTTGCAGCATTATCCGAAGCGAAGAGGGCGCGGACCGAGGCCTCGTTTTATCGATCTGAAACTGTAAATGGGGTCAGAATGGGTTACATGGGGCTT</canonical>
            <polymorphic>ACTTGCTTCGAGCCAATTTATCTCGGTCCTTGTGAAAGATATCAAAAAATGGTCAATTGACAAAATGCTTATCATAATACCAGCAACATTTTATTGATTGACCATTTTTTTGATATCTGCTACAGTAACCGAGATAAACTGGATCAAAGTAAAAATTAATTTAGGAACAGAGTCTTCCCACTATTAACTTTAACTCAGTTTATCTCGGTTACTGTAACAGATATCAAGAAGTAATCAACTAATAAAATATTGCTCATGTTATGATAAATATTTGATTCGTTGACAACGTTTTGATAGCTTGTACAGGGATCGAGATATACAGACTCAAATTTTCAGTGAAGTTTAATCCCAAAACATTTTCATCTCATAATCGAGTTTTCGTAATAAAGAGAATCGAATCTCAAAAAAGAGGAAGGTATTAGCCTAACTGGCTCTGGGAATTGCCGCAGCGGTTGTAAAAACTATTATTCCCCGTTTTCCAACCAATTTATCTGATGAAWACTTGTTTACTATGTCTTCATTCTTCCTTCAAAAAATGGATGGATGGGAGAAGAGAATAACCATTAAGGAATTTGATTTATCCTTTTCGACTCCTTTTTTTTCGACTTGGTGGCTCCAGGGGTTTCTGAAATTTTTAGACTGAAGTAACTGAAAACTGAGAAACGTTGGAAGCTGTTTTATTTTTTCAACAGAAGAAATAGTATGGGAAGAAACGGAAAAAAAAGTCAGTTTTAACAATGTTTCTGCAGCGTTTTCAGGGGGAAATTTTCAGAGATTTTCAGAGAGAGAGAAAGGATAGGAGAATGGATTTTCTTCGGAATTGGGGATTTGATGGAACAGCCAAAGTGCGATTGACAGATAAATAGAGATAAAAGAGGAGAAAGAAGAACAGGATGAGGATGATGTTGCAGCATTATCCGAAGCGAAGAGGGCGCGGACCGAGGCCTCGTTTTATCGATCTGAAACTGTAAATGGGGTCAGAATGGGTTACATGGGGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGTATTAGCCTAACTGGCTCT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCAGTTTTCAGTTACTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGTATTAGCCTAACTGGCTCTGGGAATTGCCGCAGCGGTTGTAAAAACTATTATTCCCCGTTTTCCAACCAATTTATCTGATGAAAACTTGTTTACTATGTCTTCATTCTTCCTTCAAAAAATGGATGGATGGGAGAAGAGAATAACCATTAAGGAATTTGATTTATCCTTTTCGACTCCTTTTTTTTCGACTTGGTGGCTCCAGGGGTTTCTGAAATTTTTAGACTGAAGTAACTGAAAACTGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>AGGTATTAGCCTAACTGGCTCTGGGAATTGCCGCAGCGGTTGTAAAAACTATTATTCCCCGTTTTCCAACCAATTTATCTGATGAAWACTTGTTTACTATGTCTTCATTCTTCCTTCAAAAAATGGATGGATGGGAGAAGAGAATAACCATTAAGGAATTTGATTTATCCTTTTCGACTCCTTTTTTTTCGACTTGGTGGCTCCAGGGGTTTCTGAAATTTTTAGACTGAAGTAACTGAAAACTGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2385</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>35335</contig_pos>
        <strand>+</strand>
        <context>GAATCRAATC[C/T]CAAAAAAGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAACATTTTCATCTCATAATCGAGTTTTCGTAATAAAGAGAATCGAATC</left_flank>
        <right_flank>CAAAAAAGAGGAAGGTATTAGCCTAACTGGCTCTGGGAATTGCCGCAGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCCCATTCTCACGTCGCTGTCCATTCCGACGAGCCTAAACTTCTCAAGCGATGTTGCAAGTGCGCTCCGCTGATTTTTTTGAGGCTCCGACGTTATACTTGCTTCGAGCCAATTTATCTCGGTCCTTGTGAAAGATATCAAAAAATGGTCAATTGACAAAATGCTTATCATAATACCAGCAACATTTTATTGATTGACCATTTTTTTGATATCTGCTACAGTAACCGAGATAAACTGGATCAAAGTAAAAATTAATTTAGGAACAGAGTCTTCCCACTATTAACTTTAACTCAGTTTATCTCGGTTACTGTAACAGATATCAAGAAGTAATCAACTAATAAAATATTGCTCATGTTATGATAAATATTTGATTCGTTGACAACGTTTTGATAGCTTGTACAGGGATCGAGATATACAGACTCAAATTTTCAGTGAAGTTTAATCCCAAAACATTTTCATCTCATAATCGAGTTTTCGTAATAAAGAGAATCGAATCTCAAAAAAGAGGAAGGTATTAGCCTAACTGGCTCTGGGAATTGCCGCAGCGGTTGTAAAAACTATTATTCCCCGTTTTCCAACCAATTTATCTGATGAAAACTTGTTTACTATGTCTTCATTCTTCCTTCAAAAAATGGATGGATGGGAGAAGAGAATAACCATTAAGGAATTTGATTTATCCTTTTCGACTCCTTTTTTTTCGACTTGGTGGCTCCAGGGGTTTCTGAAATTTTTAGACTGAAGTAACTGAAAACTGAGAAACGTTGGAAGCTGTTTTATTTTTTCAACAGAAGAAATAGTATGGGAAGAAACGGAAAAAAAAGTCAGTTTTAACAATGTTTCTGCAGCGTTTTCAGGGGGAAATTTTCAGAGATTTTCAGAGAGAGAGAAAGGATAGGAGAATGGATTTTCTTCGGAATTGGGGATTTGATGGAACAGCCAAAGTGCGATTGACAGATAAATAGAGATAAAAGAGGAGAAAGAAGAACAGGATGAGGAT</canonical>
            <polymorphic>TCTTCCCATTCTCACGTCGCTGTCCATTCCGACGAGCCTAAACTTCTCAAGCGATGTTGCAAGTGCGCTCCGCTGATTTTTTTGAGGCTCCGACGTTATACTTGCTTCGAGCCAATTTATCTCGGTCCTTGTGAAAGATATCAAAAAATGGTCAATTGACAAAATGCTTATCATAATACCAGCAACATTTTATTGATTGACCATTTTTTTGATATCTGCTACAGTAACCGAGATAAACTGGATCAAAGTAAAAATTAATTTAGGAACAGAGTCTTCCCACTATTAACTTTAACTCAGTTTATCTCGGTTACTGTAACAGATATCAAGAAGTAATCAACTAATAAAATATTGCTCATGTTATGATAAATATTTGATTCGTTGACAACGTTTTGATAGCTTGTACAGGGATCGAGATATACAGACTCAAATTTTCAGTGAAGTTTAATCCCAAAACATTTTCATCTCATAATCGAGTTTTCGTAATAAAGAGAATCGAATCYCAAAAAAGAGGAAGGTATTAGCCTAACTGGCTCTGGGAATTGCCGCAGCGGTTGTAAAAACTATTATTCCCCGTTTTCCAACCAATTTATCTGATGAAAACTTGTTTACTATGTCTTCATTCTTCCTTCAAAAAATGGATGGATGGGAGAAGAGAATAACCATTAAGGAATTTGATTTATCCTTTTCGACTCCTTTTTTTTCGACTTGGTGGCTCCAGGGGTTTCTGAAATTTTTAGACTGAAGTAACTGAAAACTGAGAAACGTTGGAAGCTGTTTTATTTTTTCAACAGAAGAAATAGTATGGGAAGAAACGGAAAAAAAAGTCAGTTTTAACAATGTTTCTGCAGCGTTTTCAGGGGGAAATTTTCAGAGATTTTCAGAGAGAGAGAAAGGATAGGAGAATGGATTTTCTTCGGAATTGGGGATTTGATGGAACAGCCAAAGTGCGATTGACAGATAAATAGAGATAAAAGAGGAGAAAGAAGAACAGGATGAGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGAAGTTTAATCCCAAAACAT</pcr_primer_p1>
		<pcr_primer_p2>AATCAAATTCCTTAATGGTTATTC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AGTGAAGTTTAATCCCAAAACATTTTCATCTCATAATCGAGTTTTCGTAATAAAGAGAATCGAATCTCAAAAAAGAGGAAGGTATTAGCCTAACTGGCTCTGGGAATTGCCGCAGCGGTTGTAAAAACTATTATTCCCCGTTTTCCAACCAATTTATCTGATGAAAACTTGTTTACTATGTCTTCATTCTTCCTTCAAAAAATGGATGGATGGGAGAAGAGAATAACCATTAAGGAATTTGATT</canonical_amplicon>
		<polymorphic_amplicon>AGTGAAGTTTAATCCCAAAACATTTTCATCTCATAATCGAGTTTTCGTAATAAAGAGAATCGAATCYCAAAAAAGAGGAAGGTATTAGCCTAACTGGCTCTGGGAATTGCCGCAGCGGTTGTAAAAACTATTATTCCCCGTTTTCCAACCAATTTATCTGATGAAAACTTGTTTACTATGTCTTCATTCTTCCTTCAAAAAATGGATGGATGGGAGAAGAGAATAACCATTAAGGAATTTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2386</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>35330</contig_pos>
        <strand>+</strand>
        <context>AAAGAGAATC[A/G]AATCYCAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCCCAAAACATTTTCATCTCATAATCGAGTTTTCGTAATAAAGAGAATC</left_flank>
        <right_flank>AATCTCAAAAAAGAGGAAGGTATTAGCCTAACTGGCTCTGGGAATTGCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAAATCTTCCCATTCTCACGTCGCTGTCCATTCCGACGAGCCTAAACTTCTCAAGCGATGTTGCAAGTGCGCTCCGCTGATTTTTTTGAGGCTCCGACGTTATACTTGCTTCGAGCCAATTTATCTCGGTCCTTGTGAAAGATATCAAAAAATGGTCAATTGACAAAATGCTTATCATAATACCAGCAACATTTTATTGATTGACCATTTTTTTGATATCTGCTACAGTAACCGAGATAAACTGGATCAAAGTAAAAATTAATTTAGGAACAGAGTCTTCCCACTATTAACTTTAACTCAGTTTATCTCGGTTACTGTAACAGATATCAAGAAGTAATCAACTAATAAAATATTGCTCATGTTATGATAAATATTTGATTCGTTGACAACGTTTTGATAGCTTGTACAGGGATCGAGATATACAGACTCAAATTTTCAGTGAAGTTTAATCCCAAAACATTTTCATCTCATAATCGAGTTTTCGTAATAAAGAGAATCGAATCTCAAAAAAGAGGAAGGTATTAGCCTAACTGGCTCTGGGAATTGCCGCAGCGGTTGTAAAAACTATTATTCCCCGTTTTCCAACCAATTTATCTGATGAAAACTTGTTTACTATGTCTTCATTCTTCCTTCAAAAAATGGATGGATGGGAGAAGAGAATAACCATTAAGGAATTTGATTTATCCTTTTCGACTCCTTTTTTTTCGACTTGGTGGCTCCAGGGGTTTCTGAAATTTTTAGACTGAAGTAACTGAAAACTGAGAAACGTTGGAAGCTGTTTTATTTTTTCAACAGAAGAAATAGTATGGGAAGAAACGGAAAAAAAAGTCAGTTTTAACAATGTTTCTGCAGCGTTTTCAGGGGGAAATTTTCAGAGATTTTCAGAGAGAGAGAAAGGATAGGAGAATGGATTTTCTTCGGAATTGGGGATTTGATGGAACAGCCAAAGTGCGATTGACAGATAAATAGAGATAAAAGAGGAGAAAGAAGAACAGGATG</canonical>
            <polymorphic>CGAAATCTTCCCATTCTCACGTCGCTGTCCATTCCGACGAGCCTAAACTTCTCAAGCGATGTTGCAAGTGCGCTCCGCTGATTTTTTTGAGGCTCCGACGTTATACTTGCTTCGAGCCAATTTATCTCGGTCCTTGTGAAAGATATCAAAAAATGGTCAATTGACAAAATGCTTATCATAATACCAGCAACATTTTATTGATTGACCATTTTTTTGATATCTGCTACAGTAACCGAGATAAACTGGATCAAAGTAAAAATTAATTTAGGAACAGAGTCTTCCCACTATTAACTTTAACTCAGTTTATCTCGGTTACTGTAACAGATATCAAGAAGTAATCAACTAATAAAATATTGCTCATGTTATGATAAATATTTGATTCGTTGACAACGTTTTGATAGCTTGTACAGGGATCGAGATATACAGACTCAAATTTTCAGTGAAGTTTAATCCCAAAACATTTTCATCTCATAATCGAGTTTTCGTAATAAAGAGAATCRAATCTCAAAAAAGAGGAAGGTATTAGCCTAACTGGCTCTGGGAATTGCCGCAGCGGTTGTAAAAACTATTATTCCCCGTTTTCCAACCAATTTATCTGATGAAAACTTGTTTACTATGTCTTCATTCTTCCTTCAAAAAATGGATGGATGGGAGAAGAGAATAACCATTAAGGAATTTGATTTATCCTTTTCGACTCCTTTTTTTTCGACTTGGTGGCTCCAGGGGTTTCTGAAATTTTTAGACTGAAGTAACTGAAAACTGAGAAACGTTGGAAGCTGTTTTATTTTTTCAACAGAAGAAATAGTATGGGAAGAAACGGAAAAAAAAGTCAGTTTTAACAATGTTTCTGCAGCGTTTTCAGGGGGAAATTTTCAGAGATTTTCAGAGAGAGAGAAAGGATAGGAGAATGGATTTTCTTCGGAATTGGGGATTTGATGGAACAGCCAAAGTGCGATTGACAGATAAATAGAGATAAAAGAGGAGAAAGAAGAACAGGATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>302 293 193 113 61 23 15</canonical_bands>
                <polymorphic_bands>302 293 216 113 61 15</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>307 274 193 104 69 48 5</canonical_bands>
                <polymorphic_bands>307 274 198 104 69 48</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 378 117 5</canonical_bands>
                <polymorphic_bands>505 378 117</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTGAAGTTTAATCCCAAAACAT</pcr_primer_p1>
		<pcr_primer_p2>AATCAAATTCCTTAATGGTTATTC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AGTGAAGTTTAATCCCAAAACATTTTCATCTCATAATCGAGTTTTCGTAATAAAGAGAATCGAATCTCAAAAAAGAGGAAGGTATTAGCCTAACTGGCTCTGGGAATTGCCGCAGCGGTTGTAAAAACTATTATTCCCCGTTTTCCAACCAATTTATCTGATGAAAACTTGTTTACTATGTCTTCATTCTTCCTTCAAAAAATGGATGGATGGGAGAAGAGAATAACCATTAAGGAATTTGATT</canonical_amplicon>
		<polymorphic_amplicon>AGTGAAGTTTAATCCCAAAACATTTTCATCTCATAATCGAGTTTTCGTAATAAAGAGAATCRAATCTCAAAAAAGAGGAAGGTATTAGCCTAACTGGCTCTGGGAATTGCCGCAGCGGTTGTAAAAACTATTATTCCCCGTTTTCCAACCAATTTATCTGATGAAAACTTGTTTACTATGTCTTCATTCTTCCTTCAAAAAATGGATGGATGGGAGAAGAGAATAACCATTAAGGAATTTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2387</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>44121</contig_pos>
        <strand>+</strand>
        <context>GAAGTGATAG[C/T]TGATTGTGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGTGGAGGTGGGATAACAGAGGGGATTCGGTTAGATACTGAAGTGATAG</left_flank>
        <right_flank>TGATTGTGGACCACTTGCAAAATTATCCATTGGCGCTGGGTAGGATGGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACATACCGTCACCTCGATTCCCTGTTCAACCTGTCCCATATATCCTTGTGGCTGTTGTGGTGGTGGCCCTTGTTGGTATCCCTACAAAAAACCACTTGTTGTCATTTCATGTTGATGTGTAAAAATGCTAATACACCCCCTCATCAAAAACGAGATGAGATTATCGGTGTCTTATATAAGTGTAAAGTACCTGTGGCGGGGCGACGGGTTGCGATACGTAGCCTTGTGGCGGAGGTTGAACGCTGAAAATAAGAGAGAAAATGCTTATAAGCTGATATTTCTATGATTTCTGCTAGATGAAAATTTGTTATGTGTAATAAACCTACAACTTTGACATTCTTCGTCTTCTATTGTCATCCGTCTCAATCACTCTGAAAAATTGGGTTAGTACAAAAATAAATTCTTCTTATGAAATTCCATACATCACATCCCCATCGTCATATCTGTCCTGTGGAGGTGGGATAACAGAGGGGATTCGGTTAGATACTGAAGTGATAGCTGATTGTGGACCACTTGCAAAATTATCCATTGGCGCTGGGTAGGATGGTTGAGGCTGATAAACTGGTGGGGCAAGTGGTGGTGGTGGTGGTGGTGGTGGATAATAACTGAGAGGTTAGAAACATATAATACAGAGTTTTTAGAGAGGACTTACGGTTCGGATTGGACAACACGCTGGACCACGGGTCTCGAGCGGACAAGGCTGAAAGGTTAGGATCAGAACGGTTGATTAGATAACTTCACACGAGTTATGACTGAAGTTATGTCCTCTAATATAAGGATATAAGGTTCAGGGGTGTTGGAAGTCCAACTTGGAATGGATTACTTAAGTTATGAGTTCTGGGTTTAAGGTTCAGAGGAGACTCCAGCCAAGTCAAAGATTAGTGTTACCGAAAAATCGAGAGAAACGAAACTTACTAGGTTGGTGGTGCAGGCATTGGGACTTTAGCGTACAATGGAATCTGTAAAAATAAATGTGTTGCTCTGAAACTTCACAGGCTT</canonical>
            <polymorphic>AACATACCGTCACCTCGATTCCCTGTTCAACCTGTCCCATATATCCTTGTGGCTGTTGTGGTGGTGGCCCTTGTTGGTATCCCTACAAAAAACCACTTGTTGTCATTTCATGTTGATGTGTAAAAATGCTAATACACCCCCTCATCAAAAACGAGATGAGATTATCGGTGTCTTATATAAGTGTAAAGTACCTGTGGCGGGGCGACGGGTTGCGATACGTAGCCTTGTGGCGGAGGTTGAACGCTGAAAATAAGAGAGAAAATGCTTATAAGCTGATATTTCTATGATTTCTGCTAGATGAAAATTTGTTATGTGTAATAAACCTACAACTTTGACATTCTTCGTCTTCTATTGTCATCCGTCTCAATCACTCTGAAAAATTGGGTTAGTACAAAAATAAATTCTTCTTATGAAATTCCATACATCACATCCCCATCGTCATATCTGTCCTGTGGAGGTGGGATAACAGAGGGGATTCGGTTAGATACTGAAGTGATAGYTGATTGTGGACCACTTGCAAAATTATCCATTGGCGCTGGGTAGGATGGTTGAGGCTGATAAACTGGTGGGGCAAGTGGTGGTGGTGGTGGTGGTGGTGGATAATAACTGAGAGGTTAGAAACATATAATACAGAGTTTTTAGAGAGGACTTACGGTTCGGATTGGACAACACGCTGGACCACGGGTCTCGAGCGGACAAGGCTGAAAGGTTAGGATCAGAACGGTTGATTAGATAACTTCACACGAGTTATGACTGAAGTTATGTCCTCTAATATAAGGATATAAGGTTCAGGGGTGTTGGAAGTCCAACTTGGAATGGATTACTTAAGTTATGAGTTCTGGGTTTAAGGTTCAGAGGAGACTCCAGCCAAGTCAAAGATTAGTGTTACCGAAAAATCGAGAGAAACGAAACTTACTAGGTTGGTGGTGCAGGCATTGGGACTTTAGCGTACAATGGAATCTGTAAAAATAAATGTGTTGCTCTGAAACTTCACAGGCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>501 272 227</canonical_bands>
                <polymorphic_bands>728 272</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>227 166 155 147 130 55 52 50 15 3</canonical_bands>
                <polymorphic_bands>282 166 155 147 130 52 50 15 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACCTACAACTTTGACATTCTTC</pcr_primer_p1>
		<pcr_primer_p2>CACCAGTTTATCAGCCTCAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AACCTACAACTTTGACATTCTTCGTCTTCTATTGTCATCCGTCTCAATCACTCTGAAAAATTGGGTTAGTACAAAAATAAATTCTTCTTATGAAATTCCATACATCACATCCCCATCGTCATATCTGTCCTGTGGAGGTGGGATAACAGAGGGGATTCGGTTAGATACTGAAGTGATAGCTGATTGTGGACCACTTGCAAAATTATCCATTGGCGCTGGGTAGGATGGTTGAGGCTGATAAACTGGTG</canonical_amplicon>
		<polymorphic_amplicon>AACCTACAACTTTGACATTCTTCGTCTTCTATTGTCATCCGTCTCAATCACTCTGAAAAATTGGGTTAGTACAAAAATAAATTCTTCTTATGAAATTCCATACATCACATCCCCATCGTCATATCTGTCCTGTGGAGGTGGGATAACAGAGGGGATTCGGTTAGATACTGAAGTGATAGYTGATTGTGGACCACTTGCAAAATTATCCATTGGCGCTGGGTAGGATGGTTGAGGCTGATAAACTGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2388</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>48158</contig_pos>
        <strand></strand>
        <context>agTTTACGGT[A/C]TTTTTGGAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTATTATTTGACACATTTTTAATATCTCTCCTAGGAACCGAGTTTACGGT</left_flank>
        <right_flank>TTTTTGGAGTATTTATGCTCAAATTGAGCCCCTGTACTTTGAGCTCAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCTTCACGAATATCTTCATCTGACAGTGTTCCTTTTTCTTTTTGAATTGTAAGGAGAAGATCCAAAAATGCTTTTCTTTTCCTGCTATTCTCCTCATTCTCCTCTTTCAGCAACTCTTTTCGATCATGGATAACCTGAAAAATTATTCGTGAGATTCTGTATGCGCACTTCTAGCTCAATTATCTCGCTTCCTTTAAGAGCTATCAAGAATCTGTGAACTGGTAAAATTTTAGTGATATTATAATAAATATTTTCTCAATTAACAAACTTTTGGTATTTCTTATGAGAACCGAGATAATTGAGCTCAAAGTTGACGGTATGGGTGGGGTTGTGTTAAAGTGTTTACGGTTACAAACGCTGCACTAAAAACTCAATTATCTCGGTTCCTATGAGAGATACCAAAAATCTGTCAATTGATAAAACATTCATCATAATATCACCAATATTTTATTATTTGACACATTTTTAATATCTCTCCTAGGAACCGAGTTTACGGTATTTTTGGAGTATTTATGCTCAAATTGAGCCCCTGTACTTTGAGCTCAATTATCTCGCTTGCTATAAAAGGTAACAAATATTCGTCAATTGATAAATTACTTATCATATTATAACCAATATTTTTTCAATTGACAGATTTTTGACATCTTTTATAGGAGCCGAGATAAATGAACTCAAAGTTGACAGTATTTTTTGAGTTTTATGCTCAAATTGAGCCCCTGCACTTTGAGATTAATTATCTCGCTTCCTTTAAGAGCAATCAAAAATTTGTAAACTAATAAAATATTGGTGATATTATAAAAAACATTTTGCCAGTTGACAATTTTTTGATATCTTGCACAGGAACCGAGATAAGTGAGCTTTCGAGCAACCATTTACGATAAGTTATCTTACCATTCTCACAAAATCATTGGTCAATTTCACATTTCGATCAAACTCAAATCCAAGACCCGTCAAGTACCAAATTGGTTTCAACCAAAGCCATGGGAACTTCATATGAT</canonical>
            <polymorphic>CTTCTTCACGAATATCTTCATCTGACAGTGTTCCTTTTTCTTTTTGAATTGTAAGGAGAAGATCCAAAAATGCTTTTCTTTTCCTGCTATTCTCCTCATTCTCCTCTTTCAGCAACTCTTTTCGATCATGGATAACCTGAAAAATTATTCGTGAGATTCTGTATGCGCACTTCTAGCTCAATTATCTCGCTTCCTTTAAGAGCTATCAAGAATCTGTGAACTGGTAAAATTTTAGTGATATTATAATAAATATTTTCTCAATTAACAAACTTTTGGTATTTCTTATGAGAACCGAGATAATTGAGCTCAAAGTTGACGGTATGGGTGGGGTTGTGTTAAAGTGTTTACGGTTACAAACGCTGCACTAAAAACTCAATTATCTCGGTTCCTATGAGAGATACCAAAAATCTGTCAATTGATAAAACATTCATCATAATATCACCAATATTTTATTATTTGACACATTTTTAATATCTCTCCTAGGAACCGAGTTTACGGTMTTTTTGGAGTATTTATGCTCAAATTGAGCCCCTGTACTTTGAGCTCAATTATCTCGCTTGCTATAAAAGGTAACAAATATTCGTCAATTGATAAATTACTTATCATATTATAACCAATATTTTTTCAATTGACAGATTTTTGACATCTTTTATAGGAGCCGAGATAAATGAACTCAAAGTTGACAGTATTTTTTGAGTTTTATGCTCAAATTGAGCCCCTGCACTTTGAGATTAATTATCTCGCTTCCTTTAAGAGCAATCAAAAATTTGTAAACTAATAAAATATTGGTGATATTATAAAAAACATTTTGCCAGTTGACAATTTTTTGATATCTTGCACAGGAACCGAGATAAGTGAGCTTTCGAGCAACCATTTACGATAAGTTATCTTACCATTCTCACAAAATCATTGGTCAATTTCACATTTCGATCAAACTCAAATCCAAGACCCGTCAAGTACCAAATTGGTTTCAACCAAAGCCATGGGAACTTCATATGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTATTCGTGAGATTCTGTATGC</pcr_primer_p1>
		<pcr_primer_p2>TGATTTTGTGAGAATGGTAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>766</pcr_amplicon_size>
		<canonical_amplicon>ATTATTCGTGAGATTCTGTATGCGCACTTCTAGCTCAATTATCTCGCTTCCTTTAAGAGCTATCAAGAATCTGTGAACTGGTAAAATTTTAGTGATATTATAATAAATATTTTCTCAATTAACAAACTTTTGGTATTTCTTATGAGAACCGAGATAATTGAGCTCAAAGTTGACGGTATGGGTGGGGTTGTGTTAAAGTGTTTACGGTTACAAACGCTGCACTAAAAACTCAATTATCTCGGTTCCTATGAGAGATACCAAAAATCTGTCAATTGATAAAACATTCATCATAATATCACCAATATTTTATTATTTGACACATTTTTAATATCTCTCCTAGGAACCGAGTTTACGGTATTTTTGGAGTATTTATGCTCAAATTGAGCCCCTGTACTTTGAGCTCAATTATCTCGCTTGCTATAAAAGGTAACAAATATTCGTCAATTGATAAATTACTTATCATATTATAACCAATATTTTTTCAATTGACAGATTTTTGACATCTTTTATAGGAGCCGAGATAAATGAACTCAAAGTTGACAGTATTTTTTGAGTTTTATGCTCAAATTGAGCCCCTGCACTTTGAGATTAATTATCTCGCTTCCTTTAAGAGCAATCAAAAATTTGTAAACTAATAAAATATTGGTGATATTATAAAAAACATTTTGCCAGTTGACAATTTTTTGATATCTTGCACAGGAACCGAGATAAGTGAGCTTTCGAGCAACCATTTACGATAAGTTATCTTACCATTCTCACAAAATCA</canonical_amplicon>
		<polymorphic_amplicon>ATTATTCGTGAGATTCTGTATGCGCACTTCTAGCTCAATTATCTCGCTTCCTTTAAGAGCTATCAAGAATCTGTGAACTGGTAAAATTTTAGTGATATTATAATAAATATTTTCTCAATTAACAAACTTTTGGTATTTCTTATGAGAACCGAGATAATTGAGCTCAAAGTTGACGGTATGGGTGGGGTTGTGTTAAAGTGTTTACGGTTACAAACGCTGCACTAAAAACTCAATTATCTCGGTTCCTATGAGAGATACCAAAAATCTGTCAATTGATAAAACATTCATCATAATATCACCAATATTTTATTATTTGACACATTTTTAATATCTCTCCTAGGAACCGAGTTTACGGTMTTTTTGGAGTATTTATGCTCAAATTGAGCCCCTGTACTTTGAGCTCAATTATCTCGCTTGCTATAAAAGGTAACAAATATTCGTCAATTGATAAATTACTTATCATATTATAACCAATATTTTTTCAATTGACAGATTTTTGACATCTTTTATAGGAGCCGAGATAAATGAACTCAAAGTTGACAGTATTTTTTGAGTTTTATGCTCAAATTGAGCCCCTGCACTTTGAGATTAATTATCTCGCTTCCTTTAAGAGCAATCAAAAATTTGTAAACTAATAAAATATTGGTGATATTATAAAAAACATTTTGCCAGTTGACAATTTTTTGATATCTTGCACAGGAACCGAGATAAGTGAGCTTTCGAGCAACCATTTACGATAAGTTATCTTACCATTCTCACAAAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2391</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>73040</contig_pos>
        <strand>+</strand>
        <context>TGACATAATT[A/T]AATTTTCTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCCATAACCTGCGAATTTTAAACTTAAAAATTGTTCGCATGACATAATT</left_flank>
        <right_flank>AATTTTCTATTTTAACGATTTTTAAGATTTCTTCGAAAAATGAGTTTCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTATCATGGTCTCTCGGATAAGAGACCATGCATCACAATCATCATATGTGTCACATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGANNNNNNNNNNAATCCATGTGCCTGATTTTACCGCCGTGTTTGAGAAAGGGAAATCGTCGAAAACAGTTAAAATCGAGAGAAAAAAACGGAAGAAAATTTTCAGGTTACGGTATTCTACCGGGACAAAAAATCGAAGCTGAAGGTCTCACAACGTCAACTACCGTAATCTGAAAAAAAGTTCTGAAATTTAGCAGAATTCGAAAGAAGTCAGTTTTACGGCATTTTTTTCGAAACACATGGACACATTTTCCGACTTTTTTCGAGAAAAAATAACAGAAAGTTCGATGATAAGCAGTGAAAATGAATAAAAATTGATTAAGGTAACTGTAGTTTTCGTTGTGGGACCGTAGGGCGTTTTCCTTCCATAACCTGCGAATTTTAAACTTAAAAATTGTTCGCATGACATAATTAAATTTTCTATTTTAACGATTTTTAAGATTTCTTCGAAAAATGAGTTTCTTCGAATTCCGCCTATTACAGTTCTTCCTATGACATAATTTTACTTTTTCAAACTTTTGTTTATTTTTTACACGACCCACTTCTCCTCTGTCCTGCACCAAGTTCAACTCGATTAAATGGAAGTTTCTAGAGAAAGATAGAACAGCAACATTAAAAAAATACTGATGGGGAATTATTATTTATATTATTGTTATGCTGAAAAATGAGTGGCGACTGGAAAGAGAAAAACAGTAGTAGGAAAGCAGAGAGAAAAATAAGACATACATCGGAAGCATTGGAAAAAAATTGTACAAAATGGGAAGAAAAAGATGCGGAACGACGACGGGGAAACCCGAGAGGAAGCGGCGAAAAATCAGAAGCAAGAAAAATTCAGAATTTATTATGTTATCACTTGAGCAGGAATCTTTCCGTGAACGTCGTCCTTCGCTGGGTTTCCCTCTAGTGGATCGGGC</canonical>
            <polymorphic>CCTATCATGGTCTCTCGGATAAGAGACCATGCATCACAATCATCATATGTGTCACATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGANNNNNNNNNNAATCCATGTGCCTGATTTTACCGCCGTGTTTGAGAAAGGGAAATCGTCGAAAACAGTTAAAATCGAGAGAAAAAAACGGAAGAAAATTTTCAGGTTACGGTATTCTACCGGGACAAAAAATCGAAGCTGAAGGTCTCACAACGTCAACTACCGTAATCTGAAAAAAAGTTCTGAAATTTAGCAGAATTCGAAAGAAGTCAGTTTTACGGCATTTTTTTCGAAACACATGGACACATTTTCCGACTTTTTTCGAGAAAAAATAACAGAAAGTTCGATGATAAGCAGTGAAAATGAATAAAAATTGATTAAGGTAACTGTAGTTTTCGTTGTGGGACCGTAGGGCGTTTTCCTTCCATAACCTGCGAATTTTAAACTTAAAAATTGTTCGCATGACATAATTWAATTTTCTATTTTAACGATTTTTAAGATTTCTTCGAAAAATGAGTTTCTTCGAATTCCGCCTATTACAGTTCTTCCTATGACATAATTTTACTTTTTCAAACTTTTGTTTATTTTTTACACGACCCACTTCTCCTCTGTCCTGCACCAAGTTCAACTCGATTAAATGGAAGTTTCTAGAGAAAGATAGAACAGCAACATTAAAAAAATACTGATGGGGAATTATTATTTATATTATTGTTATGCTGAAAAATGAGTGGCGACTGGAAAGAGAAAAACAGTAGTAGGAAAGCAGAGAGAAAAATAAGACATACATCGGAAGCATTGGAAAAAAATTGTACAAAATGGGAAGAAAAAGATGCGGAACGACGACGGGGAAACCCGAGAGGAAGCGGCGAAAAATCAGAAGCAAGAAAAATTCAGAATTTATTATGTTATCACTTGAGCAGGAATCTTTCCGTGAACGTCGTCCTTCGCTGGGTTTCCCTCTAGTGGATCGGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>362 183 180 90 79 52 37 10 7</canonical_bands>
                <polymorphic_bands>362 183 180 90 89 79 10 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>301 249 156 139 63 38 24 14 10 6</canonical_bands>
                <polymorphic_bands>301 249 156 139 63 38 38 10 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTTCAGGTTACGGTATTCTAC</pcr_primer_p1>
		<pcr_primer_p2>TGTCATAGGAAGAACTGTAATAGG</pcr_primer_p2>
		<pcr_amplicon_size>400</pcr_amplicon_size>
		<canonical_amplicon>AATTTTCAGGTTACGGTATTCTACCGGGACAAAAAATCGAAGCTGAAGGTCTCACAACGTCAACTACCGTAATCTGAAAAAAAGTTCTGAAATTTAGCAGAATTCGAAAGAAGTCAGTTTTACGGCATTTTTTTCGAAACACATGGACACATTTTCCGACTTTTTTCGAGAAAAAATAACAGAAAGTTCGATGATAAGCAGTGAAAATGAATAAAAATTGATTAAGGTAACTGTAGTTTTCGTTGTGGGACCGTAGGGCGTTTTCCTTCCATAACCTGCGAATTTTAAACTTAAAAATTGTTCGCATGACATAATTAAATTTTCTATTTTAACGATTTTTAAGATTTCTTCGAAAAATGAGTTTCTTCGAATTCCGCCTATTACAGTTCTTCCTATGACA</canonical_amplicon>
		<polymorphic_amplicon>AATTTTCAGGTTACGGTATTCTACCGGGACAAAAAATCGAAGCTGAAGGTCTCACAACGTCAACTACCGTAATCTGAAAAAAAGTTCTGAAATTTAGCAGAATTCGAAAGAAGTCAGTTTTACGGCATTTTTTTCGAAACACATGGACACATTTTCCGACTTTTTTCGAGAAAAAATAACAGAAAGTTCGATGATAAGCAGTGAAAATGAATAAAAATTGATTAAGGTAACTGTAGTTTTCGTTGTGGGACCGTAGGGCGTTTTCCTTCCATAACCTGCGAATTTTAAACTTAAAAATTGTTCGCATGACATAATTWAATTTTCTATTTTAACGATTTTTAAGATTTCTTCGAAAAATGAGTTTCTTCGAATTCCGCCTATTACAGTTCTTCCTATGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2392</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>73054</contig_pos>
        <strand>+</strand>
        <context>TTTCTATTTT[A/C]ACGATTTTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTTTAAACTTAAAAATTGTTCGCATGACATAATTAAATTTTCTATTTT</left_flank>
        <right_flank>ACGATTTTTAAGATTTCTTCGAAAAATGAGTTTCTTCGAATTCCGCCTAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGGATAAGAGACCATGCATCACAATCATCATATGTGTCACATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGANNNNNNNNNNAATCCATGTGCCTGATTTTACCGCCGTGTTTGAGAAAGGGAAATCGTCGAAAACAGTTAAAATCGAGAGAAAAAAACGGAAGAAAATTTTCAGGTTACGGTATTCTACCGGGACAAAAAATCGAAGCTGAAGGTCTCACAACGTCAACTACCGTAATCTGAAAAAAAGTTCTGAAATTTAGCAGAATTCGAAAGAAGTCAGTTTTACGGCATTTTTTTCGAAACACATGGACACATTTTCCGACTTTTTTCGAGAAAAAATAACAGAAAGTTCGATGATAAGCAGTGAAAATGAATAAAAATTGATTAAGGTAACTGTAGTTTTCGTTGTGGGACCGTAGGGCGTTTTCCTTCCATAACCTGCGAATTTTAAACTTAAAAATTGTTCGCATGACATAATTAAATTTTCTATTTTAACGATTTTTAAGATTTCTTCGAAAAATGAGTTTCTTCGAATTCCGCCTATTACAGTTCTTCCTATGACATAATTTTACTTTTTCAAACTTTTGTTTATTTTTTACACGACCCACTTCTCCTCTGTCCTGCACCAAGTTCAACTCGATTAAATGGAAGTTTCTAGAGAAAGATAGAACAGCAACATTAAAAAAATACTGATGGGGAATTATTATTTATATTATTGTTATGCTGAAAAATGAGTGGCGACTGGAAAGAGAAAAACAGTAGTAGGAAAGCAGAGAGAAAAATAAGACATACATCGGAAGCATTGGAAAAAAATTGTACAAAATGGGAAGAAAAAGATGCGGAACGACGACGGGGAAACCCGAGAGGAAGCGGCGAAAAATCAGAAGCAAGAAAAATTCAGAATTTATTATGTTATCACTTGAGCAGGAATCTTTCCGTGAACGTCGTCCTTCGCTGGGTTTCCCTCTAGTGGATCGGGCACGCCGGCGTCCTC</canonical>
            <polymorphic>TCGGATAAGAGACCATGCATCACAATCATCATATGTGTCACATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGANNNNNNNNNNAATCCATGTGCCTGATTTTACCGCCGTGTTTGAGAAAGGGAAATCGTCGAAAACAGTTAAAATCGAGAGAAAAAAACGGAAGAAAATTTTCAGGTTACGGTATTCTACCGGGACAAAAAATCGAAGCTGAAGGTCTCACAACGTCAACTACCGTAATCTGAAAAAAAGTTCTGAAATTTAGCAGAATTCGAAAGAAGTCAGTTTTACGGCATTTTTTTCGAAACACATGGACACATTTTCCGACTTTTTTCGAGAAAAAATAACAGAAAGTTCGATGATAAGCAGTGAAAATGAATAAAAATTGATTAAGGTAACTGTAGTTTTCGTTGTGGGACCGTAGGGCGTTTTCCTTCCATAACCTGCGAATTTTAAACTTAAAAATTGTTCGCATGACATAATTAAATTTTCTATTTTMACGATTTTTAAGATTTCTTCGAAAAATGAGTTTCTTCGAATTCCGCCTATTACAGTTCTTCCTATGACATAATTTTACTTTTTCAAACTTTTGTTTATTTTTTACACGACCCACTTCTCCTCTGTCCTGCACCAAGTTCAACTCGATTAAATGGAAGTTTCTAGAGAAAGATAGAACAGCAACATTAAAAAAATACTGATGGGGAATTATTATTTATATTATTGTTATGCTGAAAAATGAGTGGCGACTGGAAAGAGAAAAACAGTAGTAGGAAAGCAGAGAGAAAAATAAGACATACATCGGAAGCATTGGAAAAAAATTGTACAAAATGGGAAGAAAAAGATGCGGAACGACGACGGGGAAACCCGAGAGGAAGCGGCGAAAAATCAGAAGCAAGAAAAATTCAGAATTTATTATGTTATCACTTGAGCAGGAATCTTTCCGTGAACGTCGTCCTTCGCTGGGTTTCCCTCTAGTGGATCGGGCACGCCGGCGTCCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>315 249 142 139 63 38 24 14 10 6</canonical_bands>
                <polymorphic_bands>315 249 142 139 63 38 24 24 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTTCAGGTTACGGTATTCTAC</pcr_primer_p1>
		<pcr_primer_p2>TGTCATAGGAAGAACTGTAATAGG</pcr_primer_p2>
		<pcr_amplicon_size>400</pcr_amplicon_size>
		<canonical_amplicon>AATTTTCAGGTTACGGTATTCTACCGGGACAAAAAATCGAAGCTGAAGGTCTCACAACGTCAACTACCGTAATCTGAAAAAAAGTTCTGAAATTTAGCAGAATTCGAAAGAAGTCAGTTTTACGGCATTTTTTTCGAAACACATGGACACATTTTCCGACTTTTTTCGAGAAAAAATAACAGAAAGTTCGATGATAAGCAGTGAAAATGAATAAAAATTGATTAAGGTAACTGTAGTTTTCGTTGTGGGACCGTAGGGCGTTTTCCTTCCATAACCTGCGAATTTTAAACTTAAAAATTGTTCGCATGACATAATTAAATTTTCTATTTTAACGATTTTTAAGATTTCTTCGAAAAATGAGTTTCTTCGAATTCCGCCTATTACAGTTCTTCCTATGACA</canonical_amplicon>
		<polymorphic_amplicon>AATTTTCAGGTTACGGTATTCTACCGGGACAAAAAATCGAAGCTGAAGGTCTCACAACGTCAACTACCGTAATCTGAAAAAAAGTTCTGAAATTTAGCAGAATTCGAAAGAAGTCAGTTTTACGGCATTTTTTTCGAAACACATGGACACATTTTCCGACTTTTTTCGAGAAAAAATAACAGAAAGTTCGATGATAAGCAGTGAAAATGAATAAAAATTGATTAAGGTAACTGTAGTTTTCGTTGTGGGACCGTAGGGCGTTTTCCTTCCATAACCTGCGAATTTTAAACTTAAAAATTGTTCGCATGACATAATTAAATTTTCTATTTTMACGATTTTTAAGATTTCTTCGAAAAATGAGTTTCTTCGAATTCCGCCTATTACAGTTCTTCCTATGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2393</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>73079</contig_pos>
        <strand>+</strand>
        <context>TTCTTCGAAA[A/T]ATGAGTTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGACATAATTAAATTTTCTATTTTAACGATTTTTAAGATTTCTTCGAAA</left_flank>
        <right_flank>ATGAGTTTCTTCGAATTCCGCCTATTACAGTTCTTCCTATGACATAATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATCATATGTGTCACATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGANNNNNNNNNNAATCCATGTGCCTGATTTTACCGCCGTGTTTGAGAAAGGGAAATCGTCGAAAACAGTTAAAATCGAGAGAAAAAAACGGAAGAAAATTTTCAGGTTACGGTATTCTACCGGGACAAAAAATCGAAGCTGAAGGTCTCACAACGTCAACTACCGTAATCTGAAAAAAAGTTCTGAAATTTAGCAGAATTCGAAAGAAGTCAGTTTTACGGCATTTTTTTCGAAACACATGGACACATTTTCCGACTTTTTTCGAGAAAAAATAACAGAAAGTTCGATGATAAGCAGTGAAAATGAATAAAAATTGATTAAGGTAACTGTAGTTTTCGTTGTGGGACCGTAGGGCGTTTTCCTTCCATAACCTGCGAATTTTAAACTTAAAAATTGTTCGCATGACATAATTAAATTTTCTATTTTAACGATTTTTAAGATTTCTTCGAAAAATGAGTTTCTTCGAATTCCGCCTATTACAGTTCTTCCTATGACATAATTTTACTTTTTCAAACTTTTGTTTATTTTTTACACGACCCACTTCTCCTCTGTCCTGCACCAAGTTCAACTCGATTAAATGGAAGTTTCTAGAGAAAGATAGAACAGCAACATTAAAAAAATACTGATGGGGAATTATTATTTATATTATTGTTATGCTGAAAAATGAGTGGCGACTGGAAAGAGAAAAACAGTAGTAGGAAAGCAGAGAGAAAAATAAGACATACATCGGAAGCATTGGAAAAAAATTGTACAAAATGGGAAGAAAAAGATGCGGAACGACGACGGGGAAACCCGAGAGGAAGCGGCGAAAAATCAGAAGCAAGAAAAATTCAGAATTTATTATGTTATCACTTGAGCAGGAATCTTTCCGTGAACGTCGTCCTTCGCTGGGTTTCCCTCTAGTGGATCGGGCACGCCGGCGTCCTCCTTCAGCTGATCGATCAGCTCGCGT</canonical>
            <polymorphic>TCATCATATGTGTCACATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGANNNNNNNNNNAATCCATGTGCCTGATTTTACCGCCGTGTTTGAGAAAGGGAAATCGTCGAAAACAGTTAAAATCGAGAGAAAAAAACGGAAGAAAATTTTCAGGTTACGGTATTCTACCGGGACAAAAAATCGAAGCTGAAGGTCTCACAACGTCAACTACCGTAATCTGAAAAAAAGTTCTGAAATTTAGCAGAATTCGAAAGAAGTCAGTTTTACGGCATTTTTTTCGAAACACATGGACACATTTTCCGACTTTTTTCGAGAAAAAATAACAGAAAGTTCGATGATAAGCAGTGAAAATGAATAAAAATTGATTAAGGTAACTGTAGTTTTCGTTGTGGGACCGTAGGGCGTTTTCCTTCCATAACCTGCGAATTTTAAACTTAAAAATTGTTCGCATGACATAATTAAATTTTCTATTTTAACGATTTTTAAGATTTCTTCGAAAWATGAGTTTCTTCGAATTCCGCCTATTACAGTTCTTCCTATGACATAATTTTACTTTTTCAAACTTTTGTTTATTTTTTACACGACCCACTTCTCCTCTGTCCTGCACCAAGTTCAACTCGATTAAATGGAAGTTTCTAGAGAAAGATAGAACAGCAACATTAAAAAAATACTGATGGGGAATTATTATTTATATTATTGTTATGCTGAAAAATGAGTGGCGACTGGAAAGAGAAAAACAGTAGTAGGAAAGCAGAGAGAAAAATAAGACATACATCGGAAGCATTGGAAAAAAATTGTACAAAATGGGAAGAAAAAGATGCGGAACGACGACGGGGAAACCCGAGAGGAAGCGGCGAAAAATCAGAAGCAAGAAAAATTCAGAATTTATTATGTTATCACTTGAGCAGGAATCTTTCCGTGAACGTCGTCCTTCGCTGGGTTTCCCTCTAGTGGATCGGGCACGCCGGCGTCCTCCTTCAGCTGATCGATCAGCTCGCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAAATTGTTCGCATGACATA</pcr_primer_p1>
		<pcr_primer_p2>AATAATTCCCCATCAGTATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAAAAATTGTTCGCATGACATAATTAAATTTTCTATTTTAACGATTTTTAAGATTTCTTCGAAAAATGAGTTTCTTCGAATTCCGCCTATTACAGTTCTTCCTATGACATAATTTTACTTTTTCAAACTTTTGTTTATTTTTTACACGACCCACTTCTCCTCTGTCCTGCACCAAGTTCAACTCGATTAAATGGAAGTTTCTAGAGAAAGATAGAACAGCAACATTAAAAAAATACTGATGGGGAATTATT</canonical_amplicon>
		<polymorphic_amplicon>TAAAAATTGTTCGCATGACATAATTAAATTTTCTATTTTAACGATTTTTAAGATTTCTTCGAAAWATGAGTTTCTTCGAATTCCGCCTATTACAGTTCTTCCTATGACATAATTTTACTTTTTCAAACTTTTGTTTATTTTTTACACGACCCACTTCTCCTCTGTCCTGCACCAAGTTCAACTCGATTAAATGGAAGTTTCTAGAGAAAGATAGAACAGCAACATTAAAAAAATACTGATGGGGAATTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2394</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>73204</contig_pos>
        <strand>+</strand>
        <context>AACTCGATTA[A/C]ATGGRAGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTACACGACCCACTTCTCCTCTGTCCTGCACCAAGTTCAACTCGATTA</left_flank>
        <right_flank>ATGGAAGTTTCTAGAGAAAGATAGAACAGCAACATTAAAAAAATACTGAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGAAAAAAACGGAAGAAAATTTTCAGGTTACGGTATTCTACCGGGACAAAAAATCGAAGCTGAAGGTCTCACAACGTCAACTACCGTAATCTGAAAAAAAGTTCTGAAATTTAGCAGAATTCGAAAGAAGTCAGTTTTACGGCATTTTTTTCGAAACACATGGACACATTTTCCGACTTTTTTCGAGAAAAAATAACAGAAAGTTCGATGATAAGCAGTGAAAATGAATAAAAATTGATTAAGGTAACTGTAGTTTTCGTTGTGGGACCGTAGGGCGTTTTCCTTCCATAACCTGCGAATTTTAAACTTAAAAATTGTTCGCATGACATAATTAAATTTTCTATTTTAACGATTTTTAAGATTTCTTCGAAAAATGAGTTTCTTCGAATTCCGCCTATTACAGTTCTTCCTATGACATAATTTTACTTTTTCAAACTTTTGTTTATTTTTTACACGACCCACTTCTCCTCTGTCCTGCACCAAGTTCAACTCGATTAAATGGAAGTTTCTAGAGAAAGATAGAACAGCAACATTAAAAAAATACTGATGGGGAATTATTATTTATATTATTGTTATGCTGAAAAATGAGTGGCGACTGGAAAGAGAAAAACAGTAGTAGGAAAGCAGAGAGAAAAATAAGACATACATCGGAAGCATTGGAAAAAAATTGTACAAAATGGGAAGAAAAAGATGCGGAACGACGACGGGGAAACCCGAGAGGAAGCGGCGAAAAATCAGAAGCAAGAAAAATTCAGAATTTATTATGTTATCACTTGAGCAGGAATCTTTCCGTGAACGTCGTCCTTCGCTGGGTTTCCCTCTAGTGGATCGGGCACGCCGGCGTCCTCCTTCAGCTGATCGATCAGCTCGCGTGCCGGTTTGAACACTTTGCCAGGCCGGAATGTCAGTTTTCGGGAGATGAGACCCATCTGAAAAAAAGATAAATTTGAATTTCAGGCATCTCGAAAGATCTTTTTTATCGCAAAATTTGCTACCGC</canonical>
            <polymorphic>AGAGAAAAAAACGGAAGAAAATTTTCAGGTTACGGTATTCTACCGGGACAAAAAATCGAAGCTGAAGGTCTCACAACGTCAACTACCGTAATCTGAAAAAAAGTTCTGAAATTTAGCAGAATTCGAAAGAAGTCAGTTTTACGGCATTTTTTTCGAAACACATGGACACATTTTCCGACTTTTTTCGAGAAAAAATAACAGAAAGTTCGATGATAAGCAGTGAAAATGAATAAAAATTGATTAAGGTAACTGTAGTTTTCGTTGTGGGACCGTAGGGCGTTTTCCTTCCATAACCTGCGAATTTTAAACTTAAAAATTGTTCGCATGACATAATTAAATTTTCTATTTTAACGATTTTTAAGATTTCTTCGAAAAATGAGTTTCTTCGAATTCCGCCTATTACAGTTCTTCCTATGACATAATTTTACTTTTTCAAACTTTTGTTTATTTTTTACACGACCCACTTCTCCTCTGTCCTGCACCAAGTTCAACTCGATTAMATGGAAGTTTCTAGAGAAAGATAGAACAGCAACATTAAAAAAATACTGATGGGGAATTATTATTTATATTATTGTTATGCTGAAAAATGAGTGGCGACTGGAAAGAGAAAAACAGTAGTAGGAAAGCAGAGAGAAAAATAAGACATACATCGGAAGCATTGGAAAAAAATTGTACAAAATGGGAAGAAAAAGATGCGGAACGACGACGGGGAAACCCGAGAGGAAGCGGCGAAAAATCAGAAGCAAGAAAAATTCAGAATTTATTATGTTATCACTTGAGCAGGAATCTTTCCGTGAACGTCGTCCTTCGCTGGGTTTCCCTCTAGTGGATCGGGCACGCCGGCGTCCTCCTTCAGCTGATCGATCAGCTCGCGTGCCGGTTTGAACACTTTGCCAGGCCGGAATGTCAGTTTTCGGGAGATGAGACCCATCTGAAAAAAAGATAAATTTGAATTTCAGGCATCTCGAAAGATCTTTTTTATCGCAAAATTTGCTACCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>465 241 139 63 38 24 14 10 6</canonical_bands>
                <polymorphic_bands>465 241 177 63 24 14 10 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAAATTGTTCGCATGACATA</pcr_primer_p1>
		<pcr_primer_p2>AATAATTCCCCATCAGTATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAAAAATTGTTCGCATGACATAATTAAATTTTCTATTTTAACGATTTTTAAGATTTCTTCGAAAAATGAGTTTCTTCGAATTCCGCCTATTACAGTTCTTCCTATGACATAATTTTACTTTTTCAAACTTTTGTTTATTTTTTACACGACCCACTTCTCCTCTGTCCTGCACCAAGTTCAACTCGATTAAATGGAAGTTTCTAGAGAAAGATAGAACAGCAACATTAAAAAAATACTGATGGGGAATTATT</canonical_amplicon>
		<polymorphic_amplicon>TAAAAATTGTTCGCATGACATAATTAAATTTTCTATTTTAACGATTTTTAAGATTTCTTCGAAAAATGAGTTTCTTCGAATTCCGCCTATTACAGTTCTTCCTATGACATAATTTTACTTTTTCAAACTTTTGTTTATTTTTTACACGACCCACTTCTCCTCTGTCCTGCACCAAGTTCAACTCGATTAMATGGAAGTTTCTAGAGAAAGATAGAACAGCAACATTAAAAAAATACTGATGGGGAATTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2395</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>73209</contig_pos>
        <strand>+</strand>
        <context>GATTAMATGG[A/G]AGTTTCTAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACGACCCACTTCTCCTCTGTCCTGCACCAAGTTCAACTCGATTAAATGG</left_flank>
        <right_flank>AGTTTCTAGAGAAAGATAGAACAGCAACATTAAAAAAATACTGATGGGGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAACGGAAGAAAATTTTCAGGTTACGGTATTCTACCGGGACAAAAAATCGAAGCTGAAGGTCTCACAACGTCAACTACCGTAATCTGAAAAAAAGTTCTGAAATTTAGCAGAATTCGAAAGAAGTCAGTTTTACGGCATTTTTTTCGAAACACATGGACACATTTTCCGACTTTTTTCGAGAAAAAATAACAGAAAGTTCGATGATAAGCAGTGAAAATGAATAAAAATTGATTAAGGTAACTGTAGTTTTCGTTGTGGGACCGTAGGGCGTTTTCCTTCCATAACCTGCGAATTTTAAACTTAAAAATTGTTCGCATGACATAATTAAATTTTCTATTTTAACGATTTTTAAGATTTCTTCGAAAAATGAGTTTCTTCGAATTCCGCCTATTACAGTTCTTCCTATGACATAATTTTACTTTTTCAAACTTTTGTTTATTTTTTACACGACCCACTTCTCCTCTGTCCTGCACCAAGTTCAACTCGATTAAATGGAAGTTTCTAGAGAAAGATAGAACAGCAACATTAAAAAAATACTGATGGGGAATTATTATTTATATTATTGTTATGCTGAAAAATGAGTGGCGACTGGAAAGAGAAAAACAGTAGTAGGAAAGCAGAGAGAAAAATAAGACATACATCGGAAGCATTGGAAAAAAATTGTACAAAATGGGAAGAAAAAGATGCGGAACGACGACGGGGAAACCCGAGAGGAAGCGGCGAAAAATCAGAAGCAAGAAAAATTCAGAATTTATTATGTTATCACTTGAGCAGGAATCTTTCCGTGAACGTCGTCCTTCGCTGGGTTTCCCTCTAGTGGATCGGGCACGCCGGCGTCCTCCTTCAGCTGATCGATCAGCTCGCGTGCCGGTTTGAACACTTTGCCAGGCCGGAATGTCAGTTTTCGGGAGATGAGACCCATCTGAAAAAAAGATAAATTTGAATTTCAGGCATCTCGAAAGATCTTTTTTATCGCAAAATTTGCTACCGCTTCCG</canonical>
            <polymorphic>AAAAAACGGAAGAAAATTTTCAGGTTACGGTATTCTACCGGGACAAAAAATCGAAGCTGAAGGTCTCACAACGTCAACTACCGTAATCTGAAAAAAAGTTCTGAAATTTAGCAGAATTCGAAAGAAGTCAGTTTTACGGCATTTTTTTCGAAACACATGGACACATTTTCCGACTTTTTTCGAGAAAAAATAACAGAAAGTTCGATGATAAGCAGTGAAAATGAATAAAAATTGATTAAGGTAACTGTAGTTTTCGTTGTGGGACCGTAGGGCGTTTTCCTTCCATAACCTGCGAATTTTAAACTTAAAAATTGTTCGCATGACATAATTAAATTTTCTATTTTAACGATTTTTAAGATTTCTTCGAAAAATGAGTTTCTTCGAATTCCGCCTATTACAGTTCTTCCTATGACATAATTTTACTTTTTCAAACTTTTGTTTATTTTTTACACGACCCACTTCTCCTCTGTCCTGCACCAAGTTCAACTCGATTAAATGGRAGTTTCTAGAGAAAGATAGAACAGCAACATTAAAAAAATACTGATGGGGAATTATTATTTATATTATTGTTATGCTGAAAAATGAGTGGCGACTGGAAAGAGAAAAACAGTAGTAGGAAAGCAGAGAGAAAAATAAGACATACATCGGAAGCATTGGAAAAAAATTGTACAAAATGGGAAGAAAAAGATGCGGAACGACGACGGGGAAACCCGAGAGGAAGCGGCGAAAAATCAGAAGCAAGAAAAATTCAGAATTTATTATGTTATCACTTGAGCAGGAATCTTTCCGTGAACGTCGTCCTTCGCTGGGTTTCCCTCTAGTGGATCGGGCACGCCGGCGTCCTCCTTCAGCTGATCGATCAGCTCGCGTGCCGGTTTGAACACTTTGCCAGGCCGGAATGTCAGTTTTCGGGAGATGAGACCCATCTGAAAAAAAGATAAATTTGAATTTCAGGCATCTCGAAAGATCTTTTTTATCGCAAAATTTGCTACCGCTTCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAAATTGTTCGCATGACATA</pcr_primer_p1>
		<pcr_primer_p2>AATAATTCCCCATCAGTATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAAAAATTGTTCGCATGACATAATTAAATTTTCTATTTTAACGATTTTTAAGATTTCTTCGAAAAATGAGTTTCTTCGAATTCCGCCTATTACAGTTCTTCCTATGACATAATTTTACTTTTTCAAACTTTTGTTTATTTTTTACACGACCCACTTCTCCTCTGTCCTGCACCAAGTTCAACTCGATTAAATGGAAGTTTCTAGAGAAAGATAGAACAGCAACATTAAAAAAATACTGATGGGGAATTATT</canonical_amplicon>
		<polymorphic_amplicon>TAAAAATTGTTCGCATGACATAATTAAATTTTCTATTTTAACGATTTTTAAGATTTCTTCGAAAAATGAGTTTCTTCGAATTCCGCCTATTACAGTTCTTCCTATGACATAATTTTACTTTTTCAAACTTTTGTTTATTTTTTACACGACCCACTTCTCCTCTGTCCTGCACCAAGTTCAACTCGATTAAATGGRAGTTTCTAGAGAAAGATAGAACAGCAACATTAAAAAAATACTGATGGGGAATTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2416</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>112672</contig_pos>
        <strand>+</strand>
        <context>TCCGTGCCGA[A/G]CAGTGCGCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCTCCTGCAACTTGGACGCTTGCGAGTCCGGATCCGACTTCCGTGCCGA</left_flank>
        <right_flank>CAGTGCGCCAAGTTCAACGACGAGGCTCTCGACGGAAACTACCACAAATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTAACTAATAAATTATTTATCATATTATCACCAATATTTTACCAGTTGACAAATTGTTGATATATCTTACAGGAATCGAGATAATTAAACTCAAAGTGGAGACTTTGATTAGAGCAAATACGGTAACTTTAAGTAGACACACCGTCTAACATTGAGCTCAATTTTCACGATTCCCATGAGAGATATCGAAAATTTTTCAACTAATAAATTTTTTATCATAATATTACCAATATTTTATCAGTTGACAATTCTTTGATATTTTTAATATGAGCCGAGGTAATTAAGCTCAAAGTTGACTGGGCTTCCATGAGAGGAAATACGGTAATTGAGGTCGAACTGCAAAGGGCGTTCTATTAGAGGGTTTACTGTTACTAGCCAATTCTGATAATTTTCAAAACTTAAAATCTATGATTCCAGCGGTGACTGCACTGGACCATCGGCTCGCTACATCTCCTGCAACTTGGACGCTTGCGAGTCCGGATCCGACTTCCGTGCCGAGCAGTGCGCCAAGTTCAACGACGAGGCTCTCGACGGAAACTACCACAAATGGAGTCCATACAAGGGAAAGAACAAGTAAGACCATTTTTGTCCAGCTGTCATTATCCAGAATTTTAAAGGTGCGAACTTGTGTGCAAGCCAGAATCCGGAAACTTCTACTACAAATGGGCTGATAAGGTTGTCGATGGAACCAAGTGCGATTCCAAGAGCAACGATATCTGTGTTGATGGAGAGTGCCTTCCAGTTGGATGTGATGGAAAGCTTGGATCTTGTAAGTCTGAAGAATTCTGAAAACTAATAGTAAGATTACTAACTAAAGCCATTTCCAGCCCTAAAATACGACAAGTGTGGAAAGTGCGATGGTGACGGCTCGACTTGCAAAACTATCGAAGGACGTTTCGACGAGCGCAACCTCTCTCCAGGATACCATGACATCATTAAGCTTCCAGAAGGAGCCACCAACATCAAGATCTCCGAAGCCAGAAAGAGCACCAACAACTT</canonical>
            <polymorphic>GTTAACTAATAAATTATTTATCATATTATCACCAATATTTTACCAGTTGACAAATTGTTGATATATCTTACAGGAATCGAGATAATTAAACTCAAAGTGGAGACTTTGATTAGAGCAAATACGGTAACTTTAAGTAGACACACCGTCTAACATTGAGCTCAATTTTCACGATTCCCATGAGAGATATCGAAAATTTTTCAACTAATAAATTTTTTATCATAATATTACCAATATTTTATCAGTTGACAATTCTTTGATATTTTTAATATGAGCCGAGGTAATTAAGCTCAAAGTTGACTGGGCTTCCATGAGAGGAAATACGGTAATTGAGGTCGAACTGCAAAGGGCGTTCTATTAGAGGGTTTACTGTTACTAGCCAATTCTGATAATTTTCAAAACTTAAAATCTATGATTCCAGCGGTGACTGCACTGGACCATCGGCTCGCTACATCTCCTGCAACTTGGACGCTTGCGAGTCCGGATCCGACTTCCGTGCCGARCAGTGCGCCAAGTTCAACGACGAGGCTCTCGACGGAAACTACCACAAATGGAGTCCATACAAGGGAAAGAACAAGTAAGACCATTTTTGTCCAGCTGTCATTATCCAGAATTTTAAAGGTGCGAACTTGTGTGCAAGCCAGAATCCGGAAACTTCTACTACAAATGGGCTGATAAGGTTGTCGATGGAACCAAGTGCGATTCCAAGAGCAACGATATCTGTGTTGATGGAGAGTGCCTTCCAGTTGGATGTGATGGAAAGCTTGGATCTTGTAAGTCTGAAGAATTCTGAAAACTAATAGTAAGATTACTAACTAAAGCCATTTCCAGCCCTAAAATACGACAAGTGTGGAAAGTGCGATGGTGACGGCTCGACTTGCAAAACTATCGAAGGACGTTTCGACGAGCGCAACCTCTCTCCAGGATACCATGACATCATTAAGCTTCCAGAAGGAGCCACCAACATCAAGATCTCCGAAGCCAGAAAGAGCACCAACAACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTCTATTAGAGGGTTTACTGTT</pcr_primer_p1>
		<pcr_primer_p2>GACAAAAATGGTCTTACTTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CGTTCTATTAGAGGGTTTACTGTTACTAGCCAATTCTGATAATTTTCAAAACTTAAAATCTATGATTCCAGCGGTGACTGCACTGGACCATCGGCTCGCTACATCTCCTGCAACTTGGACGCTTGCGAGTCCGGATCCGACTTCCGTGCCGAGCAGTGCGCCAAGTTCAACGACGAGGCTCTCGACGGAAACTACCACAAATGGAGTCCATACAAGGGAAAGAACAAGTAAGACCATTTTTGTC</canonical_amplicon>
		<polymorphic_amplicon>CGTTCTATTAGAGGGTTTACTGTTACTAGCCAATTCTGATAATTTTCAAAACTTAAAATCTATGATTCCAGCGGTGACTGCACTGGACCATCGGCTCGCTACATCTCCTGCAACTTGGACGCTTGCGAGTCCGGATCCGACTTCCGTGCCGARCAGTGCGCCAAGTTCAACGACGAGGCTCTCGACGGAAACTACCACAAATGGAGTCCATACAAGGGAAAGAACAAGTAAGACCATTTTTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2417</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>112908</contig_pos>
        <strand>+</strand>
        <context>ATGGAGAGTG[C/T]CTTCCAGTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAACCAAGTGCGATTCCAAGAGCAACGATATCTGTGTTGATGGAGAGTG</left_flank>
        <right_flank>CTTCCAGTTGGATGTGATGGAAAGCTTGGATCTTGTAAGTCTGAAGAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCAGTTGACAATTCTTTGATATTTTTAATATGAGCCGAGGTAATTAAGCTCAAAGTTGACTGGGCTTCCATGAGAGGAAATACGGTAATTGAGGTCGAACTGCAAAGGGCGTTCTATTAGAGGGTTTACTGTTACTAGCCAATTCTGATAATTTTCAAAACTTAAAATCTATGATTCCAGCGGTGACTGCACTGGACCATCGGCTCGCTACATCTCCTGCAACTTGGACGCTTGCGAGTCCGGATCCGACTTCCGTGCCGAGCAGTGCGCCAAGTTCAACGACGAGGCTCTCGACGGAAACTACCACAAATGGAGTCCATACAAGGGAAAGAACAAGTAAGACCATTTTTGTCCAGCTGTCATTATCCAGAATTTTAAAGGTGCGAACTTGTGTGCAAGCCAGAATCCGGAAACTTCTACTACAAATGGGCTGATAAGGTTGTCGATGGAACCAAGTGCGATTCCAAGAGCAACGATATCTGTGTTGATGGAGAGTGCCTTCCAGTTGGATGTGATGGAAAGCTTGGATCTTGTAAGTCTGAAGAATTCTGAAAACTAATAGTAAGATTACTAACTAAAGCCATTTCCAGCCCTAAAATACGACAAGTGTGGAAAGTGCGATGGTGACGGCTCGACTTGCAAAACTATCGAAGGACGTTTCGACGAGCGCAACCTCTCTCCAGGATACCATGACATCATTAAGCTTCCAGAAGGAGCCACCAACATCAAGATCTCCGAAGCCAGAAAGAGCACCAACAACTTGGCTCTTAAAAACGGATCCGATCATTTCTATCTCAATGGAAACGGATTGATTCAAGTTGAGAAGGAGGTCGAGGTCGGAGGCACCATCTTCGTCTACGATGACGCCGAGCCAGAAACTCTCAGCGCTCAAGGACCACTCTCTGAGGAGCTCACCGTTGCTCTTCTGTTCAGAAAGGGAAGCCGTGACACCGCGATCAAGTACGAATTCTCGATCCCACTTGAAGAGGAAGTCGACT</canonical>
            <polymorphic>TATCAGTTGACAATTCTTTGATATTTTTAATATGAGCCGAGGTAATTAAGCTCAAAGTTGACTGGGCTTCCATGAGAGGAAATACGGTAATTGAGGTCGAACTGCAAAGGGCGTTCTATTAGAGGGTTTACTGTTACTAGCCAATTCTGATAATTTTCAAAACTTAAAATCTATGATTCCAGCGGTGACTGCACTGGACCATCGGCTCGCTACATCTCCTGCAACTTGGACGCTTGCGAGTCCGGATCCGACTTCCGTGCCGAGCAGTGCGCCAAGTTCAACGACGAGGCTCTCGACGGAAACTACCACAAATGGAGTCCATACAAGGGAAAGAACAAGTAAGACCATTTTTGTCCAGCTGTCATTATCCAGAATTTTAAAGGTGCGAACTTGTGTGCAAGCCAGAATCCGGAAACTTCTACTACAAATGGGCTGATAAGGTTGTCGATGGAACCAAGTGCGATTCCAAGAGCAACGATATCTGTGTTGATGGAGAGTGYCTTCCAGTTGGATGTGATGGAAAGCTTGGATCTTGTAAGTCTGAAGAATTCTGAAAACTAATAGTAAGATTACTAACTAAAGCCATTTCCAGCCCTAAAATACGACAAGTGTGGAAAGTGCGATGGTGACGGCTCGACTTGCAAAACTATCGAAGGACGTTTCGACGAGCGCAACCTCTCTCCAGGATACCATGACATCATTAAGCTTCCAGAAGGAGCCACCAACATCAAGATCTCCGAAGCCAGAAAGAGCACCAACAACTTGGCTCTTAAAAACGGATCCGATCATTTCTATCTCAATGGAAACGGATTGATTCAAGTTGAGAAGGAGGTCGAGGTCGGAGGCACCATCTTCGTCTACGATGACGCCGAGCCAGAAACTCTCAGCGCTCAAGGACCACTCTCTGAGGAGCTCACCGTTGCTCTTCTGTTCAGAAAGGGAAGCCGTGACACCGCGATCAAGTACGAATTCTCGATCCCACTTGAAGAGGAAGTCGACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTACTACAAATGGGCTGATA</pcr_primer_p1>
		<pcr_primer_p2>GAAACGTCCTTCGATAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTTCTACTACAAATGGGCTGATAAGGTTGTCGATGGAACCAAGTGCGATTCCAAGAGCAACGATATCTGTGTTGATGGAGAGTGCCTTCCAGTTGGATGTGATGGAAAGCTTGGATCTTGTAAGTCTGAAGAATTCTGAAAACTAATAGTAAGATTACTAACTAAAGCCATTTCCAGCCCTAAAATACGACAAGTGTGGAAAGTGCGATGGTGACGGCTCGACTTGCAAAACTATCGAAGGACGTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTTCTACTACAAATGGGCTGATAAGGTTGTCGATGGAACCAAGTGCGATTCCAAGAGCAACGATATCTGTGTTGATGGAGAGTGYCTTCCAGTTGGATGTGATGGAAAGCTTGGATCTTGTAAGTCTGAAGAATTCTGAAAACTAATAGTAAGATTACTAACTAAAGCCATTTCCAGCCCTAAAATACGACAAGTGTGGAAAGTGCGATGGTGACGGCTCGACTTGCAAAACTATCGAAGGACGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2418</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>116278</contig_pos>
        <strand>+</strand>
        <context>AGCAATACGT[C/G]CCAACTCCAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCAACCACTGCCGCCCCACCAGCTCCACAGAACATCCAGCAGCAATACGT</left_flank>
        <right_flank>CCAACTCCACAGCCACAAGAAATCGATATCGTTTCTGATGATCAATCCCA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGGAGGAACTGTCGCTCCACACAAGATCGTCGCTTGCAACCAGTCTCAAGAAAGTGGAACCGTTTGCGGATCTGGATACAAACTTGTAAGTTAAAAACGCATTTTGAAAAATAGTCCCTGACTTCTTTCTAGGCCTGGCACTACGACACCACCGAAGGGCGATGCAACCAATTCTGGTACGGAGGATGCGGTGGAAACGACAACAACTTCGCCACTCAAGAGATGTGCGAGACCATCTGCGTCGAGCCACCAAGCAAGGGAAGATGCTACTTGCCACGTGTTGATGGACCACTTCGTTGCGACCAACTCCAGCCAAGATACTACTACGATCATACCAAGAAGCATTGTGTCGCTTTCTGGTGGAGAGGATGCTTGGGAAATGCCAACAACTTCAACTCGTTCGAAGAGTGCTCCATGTTCTGTAAGGATGTTGGACCATACGACGAACCAACCACTGCCGCCCCACCAGCTCCACAGAACATCCAGCAGCAATACGTCCCAACTCCACAGCCACAAGAAATCGATATCGTTTCTGATGATCAATCCCAACAGCAACCACAACCACAACAACCACAACAGCCAGCAGCTCCACAGCAGCCACGTCAATCTATGGAAGACATCTGCAGATCTCGTCAAGATGCCGGACCATGCGAGACCTATTCCGACCAATGGTTCTACAACGCCTTCTCCCAACAGTGCGAGACCTTCACCTATGGAGGATGCGGAGGAAATTTGAATCGTTTCCGCACCAAAGATGAATGCGAACGCAGATGCTTCTTTGTACATGGAGGTCAACCATCTTCGGAGCAAGCTCAACCAGCTCAAGCCGCTGCTCCAGCCGCTCCAGCCGCCGCCGCCACCAACATTGTCTCGCCACCACAACAGCCACAATCCAGCCCAGTTGTCATTCCATGTAAGTTTCTACCGCATCCCTAAAATTCTTTATTTCTAAGTTCCTATAATAAGTTATGCACGTTTATCTGAGCATCCAACCATTC</canonical>
            <polymorphic>ATGGGAGGAACTGTCGCTCCACACAAGATCGTCGCTTGCAACCAGTCTCAAGAAAGTGGAACCGTTTGCGGATCTGGATACAAACTTGTAAGTTAAAAACGCATTTTGAAAAATAGTCCCTGACTTCTTTCTAGGCCTGGCACTACGACACCACCGAAGGGCGATGCAACCAATTCTGGTACGGAGGATGCGGTGGAAACGACAACAACTTCGCCACTCAAGAGATGTGCGAGACCATCTGCGTCGAGCCACCAAGCAAGGGAAGATGCTACTTGCCACGTGTTGATGGACCACTTCGTTGCGACCAACTCCAGCCAAGATACTACTACGATCATACCAAGAAGCATTGTGTCGCTTTCTGGTGGAGAGGATGCTTGGGAAATGCCAACAACTTCAACTCGTTCGAAGAGTGCTCCATGTTCTGTAAGGATGTTGGACCATACGACGAACCAACCACTGCCGCCCCACCAGCTCCACAGAACATCCAGCAGCAATACGTSCCAACTCCACAGCCACAAGAAATCGATATCGTTTCTGATGATCAATCCCAACAGCAACCACAACCACAACAACCACAACAGCCAGCAGCTCCACAGCAGCCACGTCAATCTATGGAAGACATCTGCAGATCTCGTCAAGATGCCGGACCATGCGAGACCTATTCCGACCAATGGTTCTACAACGCCTTCTCCCAACAGTGCGAGACCTTCACCTATGGAGGATGCGGAGGAAATTTGAATCGTTTCCGCACCAAAGATGAATGCGAACGCAGATGCTTCTTTGTACATGGAGGTCAACCATCTTCGGAGCAAGCTCAACCAGCTCAAGCCGCTGCTCCAGCCGCTCCAGCCGCCGCCGCCACCAACATTGTCTCGCCACCACAACAGCCACAATCCAGCCCAGTTGTCATTCCATGTAAGTTTCTACCGCATCCCTAAAATTCTTTATTTCTAAGTTCCTATAATAAGTTATGCACGTTTATCTGAGCATCCAACCATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATGCCAACAACTTCAAC</pcr_primer_p1>
		<pcr_primer_p2>CTGCAGATGTCTTCCATAGATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAATGCCAACAACTTCAACTCGTTCGAAGAGTGCTCCATGTTCTGTAAGGATGTTGGACCATACGACGAACCAACCACTGCCGCCCCACCAGCTCCACAGAACATCCAGCAGCAATACGTCCCAACTCCACAGCCACAAGAAATCGATATCGTTTCTGATGATCAATCCCAACAGCAACCACAACCACAACAACCACAACAGCCAGCAGCTCCACAGCAGCCACGTCAATCTATGGAAGACATCTGCAG</canonical_amplicon>
		<polymorphic_amplicon>GAAATGCCAACAACTTCAACTCGTTCGAAGAGTGCTCCATGTTCTGTAAGGATGTTGGACCATACGACGAACCAACCACTGCCGCCCCACCAGCTCCACAGAACATCCAGCAGCAATACGTSCCAACTCCACAGCCACAAGAAATCGATATCGTTTCTGATGATCAATCCCAACAGCAACCACAACCACAACAACCACAACAGCCAGCAGCTCCACAGCAGCCACGTCAATCTATGGAAGACATCTGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2419</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>116227</contig_pos>
        <strand>+</strand>
        <context>CATACGACGA[A/G]CCAACCACTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGTTCGAAGAGTGCTCCATGTTCTGTAAGGATGTTGGACCATACGACGA</left_flank>
        <right_flank>CCAACCACTGCCGCCCCACCAGCTCCACAGAACATCCAGCAGCAATACGT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGGACCAGACAGAGCCGGATGCCCAGCCACCACCACCCCACCATTCCTCATGGGAGGAACTGTCGCTCCACACAAGATCGTCGCTTGCAACCAGTCTCAAGAAAGTGGAACCGTTTGCGGATCTGGATACAAACTTGTAAGTTAAAAACGCATTTTGAAAAATAGTCCCTGACTTCTTTCTAGGCCTGGCACTACGACACCACCGAAGGGCGATGCAACCAATTCTGGTACGGAGGATGCGGTGGAAACGACAACAACTTCGCCACTCAAGAGATGTGCGAGACCATCTGCGTCGAGCCACCAAGCAAGGGAAGATGCTACTTGCCACGTGTTGATGGACCACTTCGTTGCGACCAACTCCAGCCAAGATACTACTACGATCATACCAAGAAGCATTGTGTCGCTTTCTGGTGGAGAGGATGCTTGGGAAATGCCAACAACTTCAACTCGTTCGAAGAGTGCTCCATGTTCTGTAAGGATGTTGGACCATACGACGAACCAACCACTGCCGCCCCACCAGCTCCACAGAACATCCAGCAGCAATACGTCCCAACTCCACAGCCACAAGAAATCGATATCGTTTCTGATGATCAATCCCAACAGCAACCACAACCACAACAACCACAACAGCCAGCAGCTCCACAGCAGCCACGTCAATCTATGGAAGACATCTGCAGATCTCGTCAAGATGCCGGACCATGCGAGACCTATTCCGACCAATGGTTCTACAACGCCTTCTCCCAACAGTGCGAGACCTTCACCTATGGAGGATGCGGAGGAAATTTGAATCGTTTCCGCACCAAAGATGAATGCGAACGCAGATGCTTCTTTGTACATGGAGGTCAACCATCTTCGGAGCAAGCTCAACCAGCTCAAGCCGCTGCTCCAGCCGCTCCAGCCGCCGCCGCCACCAACATTGTCTCGCCACCACAACAGCCACAATCCAGCCCAGTTGTCATTCCATGTAAGTTTCTACCGCATCCCTAAAATTCTTTATT</canonical>
            <polymorphic>TTGGGACCAGACAGAGCCGGATGCCCAGCCACCACCACCCCACCATTCCTCATGGGAGGAACTGTCGCTCCACACAAGATCGTCGCTTGCAACCAGTCTCAAGAAAGTGGAACCGTTTGCGGATCTGGATACAAACTTGTAAGTTAAAAACGCATTTTGAAAAATAGTCCCTGACTTCTTTCTAGGCCTGGCACTACGACACCACCGAAGGGCGATGCAACCAATTCTGGTACGGAGGATGCGGTGGAAACGACAACAACTTCGCCACTCAAGAGATGTGCGAGACCATCTGCGTCGAGCCACCAAGCAAGGGAAGATGCTACTTGCCACGTGTTGATGGACCACTTCGTTGCGACCAACTCCAGCCAAGATACTACTACGATCATACCAAGAAGCATTGTGTCGCTTTCTGGTGGAGAGGATGCTTGGGAAATGCCAACAACTTCAACTCGTTCGAAGAGTGCTCCATGTTCTGTAAGGATGTTGGACCATACGACGARCCAACCACTGCCGCCCCACCAGCTCCACAGAACATCCAGCAGCAATACGTCCCAACTCCACAGCCACAAGAAATCGATATCGTTTCTGATGATCAATCCCAACAGCAACCACAACCACAACAACCACAACAGCCAGCAGCTCCACAGCAGCCACGTCAATCTATGGAAGACATCTGCAGATCTCGTCAAGATGCCGGACCATGCGAGACCTATTCCGACCAATGGTTCTACAACGCCTTCTCCCAACAGTGCGAGACCTTCACCTATGGAGGATGCGGAGGAAATTTGAATCGTTTCCGCACCAAAGATGAATGCGAACGCAGATGCTTCTTTGTACATGGAGGTCAACCATCTTCGGAGCAAGCTCAACCAGCTCAAGCCGCTGCTCCAGCCGCTCCAGCCGCCGCCGCCACCAACATTGTCTCGCCACCACAACAGCCACAATCCAGCCCAGTTGTCATTCCATGTAAGTTTCTACCGCATCCCTAAAATTCTTTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATGCCAACAACTTCAAC</pcr_primer_p1>
		<pcr_primer_p2>CTGCAGATGTCTTCCATAGATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAATGCCAACAACTTCAACTCGTTCGAAGAGTGCTCCATGTTCTGTAAGGATGTTGGACCATACGACGAACCAACCACTGCCGCCCCACCAGCTCCACAGAACATCCAGCAGCAATACGTCCCAACTCCACAGCCACAAGAAATCGATATCGTTTCTGATGATCAATCCCAACAGCAACCACAACCACAACAACCACAACAGCCAGCAGCTCCACAGCAGCCACGTCAATCTATGGAAGACATCTGCAG</canonical_amplicon>
		<polymorphic_amplicon>GAAATGCCAACAACTTCAACTCGTTCGAAGAGTGCTCCATGTTCTGTAAGGATGTTGGACCATACGACGARCCAACCACTGCCGCCCCACCAGCTCCACAGAACATCCAGCAGCAATACGTCCCAACTCCACAGCCACAAGAAATCGATATCGTTTCTGATGATCAATCCCAACAGCAACCACAACCACAACAACCACAACAGCCAGCAGCTCCACAGCAGCCACGTCAATCTATGGAAGACATCTGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2420</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>116729</contig_pos>
        <strand>+</strand>
        <context>TTCTTTATTT[C/T]TAAGTTCCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGTTGTCATTCCATGTAAGTTTCTACCGCATCCCTAAAATTCTTTATTT</left_flank>
        <right_flank>TAAGTTCCTATAATAAGTTATGCACGTTTATCTGAGCATCCAACCATTCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCACTGCCGCCCCACCAGCTCCACAGAACATCCAGCAGCAATACGTCCCAACTCCACAGCCACAAGAAATCGATATCGTTTCTGATGATCAATCCCAACAGCAACCACAACCACAACAACCACAACAGCCAGCAGCTCCACAGCAGCCACGTCAATCTATGGAAGACATCTGCAGATCTCGTCAAGATGCCGGACCATGCGAGACCTATTCCGACCAATGGTTCTACAACGCCTTCTCCCAACAGTGCGAGACCTTCACCTATGGAGGATGCGGAGGAAATTTGAATCGTTTCCGCACCAAAGATGAATGCGAACGCAGATGCTTCTTTGTACATGGAGGTCAACCATCTTCGGAGCAAGCTCAACCAGCTCAAGCCGCTGCTCCAGCCGCTCCAGCCGCCGCCGCCACCAACATTGTCTCGCCACCACAACAGCCACAATCCAGCCCAGTTGTCATTCCATGTAAGTTTCTACCGCATCCCTAAAATTCTTTATTTCTAAGTTCCTATAATAAGTTATGCACGTTTATCTGAGCATCCAACCATTCCAGCGAACAACAAGCAACGCGAAGCATGCCACTTGAACGTCGACCAGGGACGTTGTAAGGGAGCATTCGACTCATGGTACTACGAAGTCGCCACCGGATCGTGCGTCTCGTTCAAGTACACCGGATGCGGAGGAAACGCCAACCGATTCCCAAGCAAGGATCAGTGCGAGCAGCTTTGTTTGAAGCCAGTCGAGACTGAGTCTGGAAGTATGGATATGTTTTATTTTAGCATTCAAAAATATCATTTTGTTGGAGACAATGGTTCAAATTAGGGATGTTGTGAGGGAGAGGAGCCTGTGTAGTTTCAGTTACGCTTGGATGATATGTATAAGACTGTCAGAATCGCATAGCTACAGTACCGGTCAATGAGATACTGTCAACTTTAAGCTCAATTATCTCAGTTCCTGTGAAAGATATCAAAATAAGGTCAATTAATAAAATGTTTTTGATA</canonical>
            <polymorphic>AACCACTGCCGCCCCACCAGCTCCACAGAACATCCAGCAGCAATACGTCCCAACTCCACAGCCACAAGAAATCGATATCGTTTCTGATGATCAATCCCAACAGCAACCACAACCACAACAACCACAACAGCCAGCAGCTCCACAGCAGCCACGTCAATCTATGGAAGACATCTGCAGATCTCGTCAAGATGCCGGACCATGCGAGACCTATTCCGACCAATGGTTCTACAACGCCTTCTCCCAACAGTGCGAGACCTTCACCTATGGAGGATGCGGAGGAAATTTGAATCGTTTCCGCACCAAAGATGAATGCGAACGCAGATGCTTCTTTGTACATGGAGGTCAACCATCTTCGGAGCAAGCTCAACCAGCTCAAGCCGCTGCTCCAGCCGCTCCAGCCGCCGCCGCCACCAACATTGTCTCGCCACCACAACAGCCACAATCCAGCCCAGTTGTCATTCCATGTAAGTTTCTACCGCATCCCTAAAATTCTTTATTTYTAAGTTCCTATAATAAGTTATGCACGTTTATCTGAGCATCCAACCATTCCAGCGAACAACAAGCAACGCGAAGCATGCCACTTGAACGTCGACCAGGGACGTTGTAAGGGAGCATTCGACTCATGGTACTACGAAGTCGCCACCGGATCGTGCGTCTCGTTCAAGTACACCGGATGCGGAGGAAACGCCAACCGATTCCCAAGCAAGGATCAGTGCGAGCAGCTTTGTTTGAAGCCAGTCGAGACTGAGTCTGGAAGTATGGATATGTTTTATTTTAGCATTCAAAAATATCATTTTGTTGGAGACAATGGTTCAAATTAGGGATGTTGTGAGGGAGAGGAGCCTGTGTAGTTTCAGTTACGCTTGGATGATATGTATAAGACTGTCAGAATCGCATAGCTACAGTACCGGTCAATGAGATACTGTCAACTTTAAGCTCAATTATCTCAGTTCCTGTGAAAGATATCAAAATAAGGTCAATTAATAAAATGTTTTTGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 213 201 54 32</canonical_bands>
                <polymorphic_bands>532 213 201 54</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACCTTCACCTATGGAGGAT</pcr_primer_p1>
		<pcr_primer_p2>CGTAGTACCATGAGTCGAATG</pcr_primer_p2>
		<pcr_amplicon_size>381</pcr_amplicon_size>
		<canonical_amplicon>GACCTTCACCTATGGAGGATGCGGAGGAAATTTGAATCGTTTCCGCACCAAAGATGAATGCGAACGCAGATGCTTCTTTGTACATGGAGGTCAACCATCTTCGGAGCAAGCTCAACCAGCTCAAGCCGCTGCTCCAGCCGCTCCAGCCGCCGCCGCCACCAACATTGTCTCGCCACCACAACAGCCACAATCCAGCCCAGTTGTCATTCCATGTAAGTTTCTACCGCATCCCTAAAATTCTTTATTTCTAAGTTCCTATAATAAGTTATGCACGTTTATCTGAGCATCCAACCATTCCAGCGAACAACAAGCAACGCGAAGCATGCCACTTGAACGTCGACCAGGGACGTTGTAAGGGAGCATTCGACTCATGGTACTACG</canonical_amplicon>
		<polymorphic_amplicon>GACCTTCACCTATGGAGGATGCGGAGGAAATTTGAATCGTTTCCGCACCAAAGATGAATGCGAACGCAGATGCTTCTTTGTACATGGAGGTCAACCATCTTCGGAGCAAGCTCAACCAGCTCAAGCCGCTGCTCCAGCCGCTCCAGCCGCCGCCGCCACCAACATTGTCTCGCCACCACAACAGCCACAATCCAGCCCAGTTGTCATTCCATGTAAGTTTCTACCGCATCCCTAAAATTCTTTATTTYTAAGTTCCTATAATAAGTTATGCACGTTTATCTGAGCATCCAACCATTCCAGCGAACAACAAGCAACGCGAAGCATGCCACTTGAACGTCGACCAGGGACGTTGTAAGGGAGCATTCGACTCATGGTACTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2421</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>116563</contig_pos>
        <strand>+</strand>
        <context>GCTTCTTTGT[A/T]CATGGAGGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGAATCGTTTCCGCACCAAAGATGAATGCGAACGCAGATGCTTCTTTGT</left_flank>
        <right_flank>CATGGAGGTCAACCATCTTCGGAGCAAGCTCAACCAGCTCAAGCCGCTGC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGACCACTTCGTTGCGACCAACTCCAGCCAAGATACTACTACGATCATACCAAGAAGCATTGTGTCGCTTTCTGGTGGAGAGGATGCTTGGGAAATGCCAACAACTTCAACTCGTTCGAAGAGTGCTCCATGTTCTGTAAGGATGTTGGACCATACGACGAACCAACCACTGCCGCCCCACCAGCTCCACAGAACATCCAGCAGCAATACGTCCCAACTCCACAGCCACAAGAAATCGATATCGTTTCTGATGATCAATCCCAACAGCAACCACAACCACAACAACCACAACAGCCAGCAGCTCCACAGCAGCCACGTCAATCTATGGAAGACATCTGCAGATCTCGTCAAGATGCCGGACCATGCGAGACCTATTCCGACCAATGGTTCTACAACGCCTTCTCCCAACAGTGCGAGACCTTCACCTATGGAGGATGCGGAGGAAATTTGAATCGTTTCCGCACCAAAGATGAATGCGAACGCAGATGCTTCTTTGTACATGGAGGTCAACCATCTTCGGAGCAAGCTCAACCAGCTCAAGCCGCTGCTCCAGCCGCTCCAGCCGCCGCCGCCACCAACATTGTCTCGCCACCACAACAGCCACAATCCAGCCCAGTTGTCATTCCATGTAAGTTTCTACCGCATCCCTAAAATTCTTTATTTCTAAGTTCCTATAATAAGTTATGCACGTTTATCTGAGCATCCAACCATTCCAGCGAACAACAAGCAACGCGAAGCATGCCACTTGAACGTCGACCAGGGACGTTGTAAGGGAGCATTCGACTCATGGTACTACGAAGTCGCCACCGGATCGTGCGTCTCGTTCAAGTACACCGGATGCGGAGGAAACGCCAACCGATTCCCAAGCAAGGATCAGTGCGAGCAGCTTTGTTTGAAGCCAGTCGAGACTGAGTCTGGAAGTATGGATATGTTTTATTTTAGCATTCAAAAATATCATTTTGTTGGAGACAATGGTTCAAATTAGGGATGTTGTGAGG</canonical>
            <polymorphic>ATGGACCACTTCGTTGCGACCAACTCCAGCCAAGATACTACTACGATCATACCAAGAAGCATTGTGTCGCTTTCTGGTGGAGAGGATGCTTGGGAAATGCCAACAACTTCAACTCGTTCGAAGAGTGCTCCATGTTCTGTAAGGATGTTGGACCATACGACGAACCAACCACTGCCGCCCCACCAGCTCCACAGAACATCCAGCAGCAATACGTCCCAACTCCACAGCCACAAGAAATCGATATCGTTTCTGATGATCAATCCCAACAGCAACCACAACCACAACAACCACAACAGCCAGCAGCTCCACAGCAGCCACGTCAATCTATGGAAGACATCTGCAGATCTCGTCAAGATGCCGGACCATGCGAGACCTATTCCGACCAATGGTTCTACAACGCCTTCTCCCAACAGTGCGAGACCTTCACCTATGGAGGATGCGGAGGAAATTTGAATCGTTTCCGCACCAAAGATGAATGCGAACGCAGATGCTTCTTTGTWCATGGAGGTCAACCATCTTCGGAGCAAGCTCAACCAGCTCAAGCCGCTGCTCCAGCCGCTCCAGCCGCCGCCGCCACCAACATTGTCTCGCCACCACAACAGCCACAATCCAGCCCAGTTGTCATTCCATGTAAGTTTCTACCGCATCCCTAAAATTCTTTATTTCTAAGTTCCTATAATAAGTTATGCACGTTTATCTGAGCATCCAACCATTCCAGCGAACAACAAGCAACGCGAAGCATGCCACTTGAACGTCGACCAGGGACGTTGTAAGGGAGCATTCGACTCATGGTACTACGAAGTCGCCACCGGATCGTGCGTCTCGTTCAAGTACACCGGATGCGGAGGAAACGCCAACCGATTCCCAAGCAAGGATCAGTGCGAGCAGCTTTGTTTGAAGCCAGTCGAGACTGAGTCTGGAAGTATGGATATGTTTTATTTTAGCATTCAAAAATATCATTTTGTTGGAGACAATGGTTCAAATTAGGGATGTTGTGAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGTACA</site>
                <isoschizomers>
                    <enzyme>AauI</enzyme>
                    <enzyme>Bsp1407I</enzyme>
                    <enzyme>BsrGI</enzyme>
                    <enzyme>SspBI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 294 168 39</canonical_bands>
                <polymorphic_bands>793 168 39</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>497 333 170</canonical_bands>
                <polymorphic_bands>830 170</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACCTTCACCTATGGAGGAT</pcr_primer_p1>
		<pcr_primer_p2>GGTAGAAACTTACATGGAATGAC</pcr_primer_p2>
		<pcr_amplicon_size>225</pcr_amplicon_size>
		<canonical_amplicon>GACCTTCACCTATGGAGGATGCGGAGGAAATTTGAATCGTTTCCGCACCAAAGATGAATGCGAACGCAGATGCTTCTTTGTACATGGAGGTCAACCATCTTCGGAGCAAGCTCAACCAGCTCAAGCCGCTGCTCCAGCCGCTCCAGCCGCCGCCGCCACCAACATTGTCTCGCCACCACAACAGCCACAATCCAGCCCAGTTGTCATTCCATGTAAGTTTCTACC</canonical_amplicon>
		<polymorphic_amplicon>GACCTTCACCTATGGAGGATGCGGAGGAAATTTGAATCGTTTCCGCACCAAAGATGAATGCGAACGCAGATGCTTCTTTGTWCATGGAGGTCAACCATCTTCGGAGCAAGCTCAACCAGCTCAAGCCGCTGCTCCAGCCGCTCCAGCCGCCGCCGCCACCAACATTGTCTCGCCACCACAACAGCCACAATCCAGCCCAGTTGTCATTCCATGTAAGTTTCTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2422</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>116302</contig_pos>
        <strand></strand>
        <context>CACAAGAAAT[C/G]GATATCGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCACAGAACATCCAGCAGCAATACGTCCCAACTCCACAGCCACAAGAAAT</left_flank>
        <right_flank>GATATCGTTTCTGATGATCAATCCCAACAGCAACCACAACCACAACAACC</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGATCGTCGCTTGCAACCAGTCTCAAGAAAGTGGAACCGTTTGCGGATCTGGATACAAACTTGTAAGTTAAAAACGCATTTTGAAAAATAGTCCCTGACTTCTTTCTAGGCCTGGCACTACGACACCACCGAAGGGCGATGCAACCAATTCTGGTACGGAGGATGCGGTGGAAACGACAACAACTTCGCCACTCAAGAGATGTGCGAGACCATCTGCGTCGAGCCACCAAGCAAGGGAAGATGCTACTTGCCACGTGTTGATGGACCACTTCGTTGCGACCAACTCCAGCCAAGATACTACTACGATCATACCAAGAAGCATTGTGTCGCTTTCTGGTGGAGAGGATGCTTGGGAAATGCCAACAACTTCAACTCGTTCGAAGAGTGCTCCATGTTCTGTAAGGATGTTGGACCATACGACGAACCAACCACTGCCGCCCCACCAGCTCCACAGAACATCCAGCAGCAATACGTCCCAACTCCACAGCCACAAGAAATCGATATCGTTTCTGATGATCAATCCCAACAGCAACCACAACCACAACAACCACAACAGCCAGCAGCTCCACAGCAGCCACGTCAATCTATGGAAGACATCTGCAGATCTCGTCAAGATGCCGGACCATGCGAGACCTATTCCGACCAATGGTTCTACAACGCCTTCTCCCAACAGTGCGAGACCTTCACCTATGGAGGATGCGGAGGAAATTTGAATCGTTTCCGCACCAAAGATGAATGCGAACGCAGATGCTTCTTTGTACATGGAGGTCAACCATCTTCGGAGCAAGCTCAACCAGCTCAAGCCGCTGCTCCAGCCGCTCCAGCCGCCGCCGCCACCAACATTGTCTCGCCACCACAACAGCCACAATCCAGCCCAGTTGTCATTCCATGTAAGTTTCTACCGCATCCCTAAAATTCTTTATTTCTAAGTTCCTATAATAAGTTATGCACGTTTATCTGAGCATCCAACCATTCCAGCGAACAACAAGCAACGCGAAG</canonical>
            <polymorphic>AAGATCGTCGCTTGCAACCAGTCTCAAGAAAGTGGAACCGTTTGCGGATCTGGATACAAACTTGTAAGTTAAAAACGCATTTTGAAAAATAGTCCCTGACTTCTTTCTAGGCCTGGCACTACGACACCACCGAAGGGCGATGCAACCAATTCTGGTACGGAGGATGCGGTGGAAACGACAACAACTTCGCCACTCAAGAGATGTGCGAGACCATCTGCGTCGAGCCACCAAGCAAGGGAAGATGCTACTTGCCACGTGTTGATGGACCACTTCGTTGCGACCAACTCCAGCCAAGATACTACTACGATCATACCAAGAAGCATTGTGTCGCTTTCTGGTGGAGAGGATGCTTGGGAAATGCCAACAACTTCAACTCGTTCGAAGAGTGCTCCATGTTCTGTAAGGATGTTGGACCATACGACGAACCAACCACTGCCGCCCCACCAGCTCCACAGAACATCCAGCAGCAATACGTCCCAACTCCACAGCCACAAGAAATSGATATCGTTTCTGATGATCAATCCCAACAGCAACCACAACCACAACAACCACAACAGCCAGCAGCTCCACAGCAGCCACGTCAATCTATGGAAGACATCTGCAGATCTCGTCAAGATGCCGGACCATGCGAGACCTATTCCGACCAATGGTTCTACAACGCCTTCTCCCAACAGTGCGAGACCTTCACCTATGGAGGATGCGGAGGAAATTTGAATCGTTTCCGCACCAAAGATGAATGCGAACGCAGATGCTTCTTTGTACATGGAGGTCAACCATCTTCGGAGCAAGCTCAACCAGCTCAAGCCGCTGCTCCAGCCGCTCCAGCCGCCGCCGCCACCAACATTGTCTCGCCACCACAACAGCCACAATCCAGCCCAGTTGTCATTCCATGTAAGTTTCTACCGCATCCCTAAAATTCTTTATTTCTAAGTTCCTATAATAAGTTATGCACGTTTATCTGAGCATCCAACCATTCCAGCGAACAACAAGCAACGCGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 221 159 120</canonical_bands>
                <polymorphic_bands>620 221 159</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATGCCAACAACTTCAAC</pcr_primer_p1>
		<pcr_primer_p2>CTGCAGATGTCTTCCATAGATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAATGCCAACAACTTCAACTCGTTCGAAGAGTGCTCCATGTTCTGTAAGGATGTTGGACCATACGACGAACCAACCACTGCCGCCCCACCAGCTCCACAGAACATCCAGCAGCAATACGTCCCAACTCCACAGCCACAAGAAATCGATATCGTTTCTGATGATCAATCCCAACAGCAACCACAACCACAACAACCACAACAGCCAGCAGCTCCACAGCAGCCACGTCAATCTATGGAAGACATCTGCAG</canonical_amplicon>
		<polymorphic_amplicon>GAAATGCCAACAACTTCAACTCGTTCGAAGAGTGCTCCATGTTCTGTAAGGATGTTGGACCATACGACGAACCAACCACTGCCGCCCCACCAGCTCCACAGAACATCCAGCAGCAATACGTCCCAACTCCACAGCCACAAGAAATSGATATCGTTTCTGATGATCAATCCCAACAGCAACCACAACCACAACAACCACAACAGCCAGCAGCTCCACAGCAGCCACGTCAATCTATGGAAGACATCTGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2423</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>164587</contig_pos>
        <strand></strand>
        <context>TTGAACTAGT[G/T]GGCTCACTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAACTTAACAGTTAGCAAATTCCAAAAGCCACTCGAGGAGTTGAACTAGT</left_flank>
        <right_flank>GGCTCACTTTTGGATGTCTCGAGTTACTACCAACCAGTGTTGAGCAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTTTACGGAGTTACGGAACGAATTTTCAGAACAAAAACTTCTAAATGTCAAAATAAAAATTCACAAGTTCCGAAAATTCACAAGTCCCGACTTAACCGGAAATTTCGCAAAAATTCAAAAAAATTAAAATTTTTTTTCCGGAAATTCTGAAATTCAGAACCGTCTGATGCTTTTTTTCGACATTTTAGAACTTTATAATTTTTTCCATATTTCTGTATTTCCATATAACGAAAAACCTGTAACCAGGACCCAAAATATCAGACATAGGTACCGTATCTGCTCTGAAAGATGCCCACCCATACGTCCAATTTGAGCGTCATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGATAAAATATTTGTGACATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATCTTGCATAGGAACTGAGAGAAATTGGCCTCAAACTTAACAGTTAGCAAATTCCAAAAGCCACTCGAGGAGTTGAACTAGTGGGCTCACTTTTGGATGTCTCGAGTTACTACCAACCAGTGTTGAGCAAAAATATAATTTTGCTTCACGGATGACGGGAGACCGAAACGGAACAAAACATTTTTGACGGAAGAAGGAAACCGGAAGACGGAAAATCGAGGAATTGAAATTTTTAAATTTGAATTAGAAAGTATTTTAGATTCGAATTTTGGCATCGGTTTTGCAGATAGACGGAAAAAAATAATTTCGAAAAAGTTGACTCAAAATTCAACAAGTCCTGAAAAATCTTAGTCTTCCGTTTATTGTGATTTTTCCGGAGTTTACGGAAGACAGAAGACGGATCAAATTTTTCCGGACAGAAGACGGAAGCCGGAAGACGGGACAAAAAAAATCACGGAAGACGGTATTCCGCTCAACACTGCTACCAACTTAGCTAGTGGCGCAACATCGATCAATGTACACACGTCACGTCAAAAGGGATACCGTAGCTTCAAAAAACCCCGAAGTGTTCCTTACCTCCCCA</canonical>
            <polymorphic>GGTTTTACGGAGTTACGGAACGAATTTTCAGAACAAAAACTTCTAAATGTCAAAATAAAAATTCACAAGTTCCGAAAATTCACAAGTCCCGACTTAACCGGAAATTTCGCAAAAATTCAAAAAAATTAAAATTTTTTTTCCGGAAATTCTGAAATTCAGAACCGTCTGATGCTTTTTTTCGACATTTTAGAACTTTATAATTTTTTCCATATTTCTGTATTTCCATATAACGAAAAACCTGTAACCAGGACCCAAAATATCAGACATAGGTACCGTATCTGCTCTGAAAGATGCCCACCCATACGTCCAATTTGAGCGTCATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGATAAAATATTTGTGACATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATCTTGCATAGGAACTGAGAGAAATTGGCCTCAAACTTAACAGTTAGCAAATTCCAAAAGCCACTCGAGGAGTTGAACTAGTKGGCTCACTTTTGGATGTCTCGAGTTACTACCAACCAGTGTTGAGCAAAAATATAATTTTGCTTCACGGATGACGGGAGACCGAAACGGAACAAAACATTTTTGACGGAAGAAGGAAACCGGAAGACGGAAAATCGAGGAATTGAAATTTTTAAATTTGAATTAGAAAGTATTTTAGATTCGAATTTTGGCATCGGTTTTGCAGATAGACGGAAAAAAATAATTTCGAAAAAGTTGACTCAAAATTCAACAAGTCCTGAAAAATCTTAGTCTTCCGTTTATTGTGATTTTTCCGGAGTTTACGGAAGACAGAAGACGGATCAAATTTTTCCGGACAGAAGACGGAAGCCGGAAGACGGGACAAAAAAAATCACGGAAGACGGTATTCCGCTCAACACTGCTACCAACTTAGCTAGTGGCGCAACATCGATCAATGTACACACGTCACGTCAAAAGGGATACCGTAGCTTCAAAAAACCCCGAAGTGTTCCTTACCTCCCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>219 215 103 87 80 65 40 33 26 24 22 21 20 17 15 6 5 2</canonical_bands>
                <polymorphic_bands>219 215 103 87 80 65 40 33 26 26 24 22 21 17 15 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACCGTATCTGCTCTGAAAGA</pcr_primer_p1>
		<pcr_primer_p2>CTAAGTTGGTAGCAGTGTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>640</pcr_amplicon_size>
		<canonical_amplicon>TACCGTATCTGCTCTGAAAGATGCCCACCCATACGTCCAATTTGAGCGTCATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGATAAAATATTTGTGACATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATCTTGCATAGGAACTGAGAGAAATTGGCCTCAAACTTAACAGTTAGCAAATTCCAAAAGCCACTCGAGGAGTTGAACTAGTGGGCTCACTTTTGGATGTCTCGAGTTACTACCAACCAGTGTTGAGCAAAAATATAATTTTGCTTCACGGATGACGGGAGACCGAAACGGAACAAAACATTTTTGACGGAAGAAGGAAACCGGAAGACGGAAAATCGAGGAATTGAAATTTTTAAATTTGAATTAGAAAGTATTTTAGATTCGAATTTTGGCATCGGTTTTGCAGATAGACGGAAAAAAATAATTTCGAAAAAGTTGACTCAAAATTCAACAAGTCCTGAAAAATCTTAGTCTTCCGTTTATTGTGATTTTTCCGGAGTTTACGGAAGACAGAAGACGGATCAAATTTTTCCGGACAGAAGACGGAAGCCGGAAGACGGGACAAAAAAAATCACGGAAGACGGTATTCCGCTCAACACTGCTACCAACTTAG</canonical_amplicon>
		<polymorphic_amplicon>TACCGTATCTGCTCTGAAAGATGCCCACCCATACGTCCAATTTGAGCGTCATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGATAAAATATTTGTGACATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATCTTGCATAGGAACTGAGAGAAATTGGCCTCAAACTTAACAGTTAGCAAATTCCAAAAGCCACTCGAGGAGTTGAACTAGTKGGCTCACTTTTGGATGTCTCGAGTTACTACCAACCAGTGTTGAGCAAAAATATAATTTTGCTTCACGGATGACGGGAGACCGAAACGGAACAAAACATTTTTGACGGAAGAAGGAAACCGGAAGACGGAAAATCGAGGAATTGAAATTTTTAAATTTGAATTAGAAAGTATTTTAGATTCGAATTTTGGCATCGGTTTTGCAGATAGACGGAAAAAAATAATTTCGAAAAAGTTGACTCAAAATTCAACAAGTCCTGAAAAATCTTAGTCTTCCGTTTATTGTGATTTTTCCGGAGTTTACGGAAGACAGAAGACGGATCAAATTTTTCCGGACAGAAGACGGAAGCCGGAAGACGGGACAAAAAAAATCACGGAAGACGGTATTCCGCTCAACACTGCTACCAACTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2425</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>166943</contig_pos>
        <strand>+</strand>
        <context>TTACATGTCA[C/T]GTTGAAAAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCA</left_flank>
        <right_flank>GTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTATATCTTGCGTATCCTACATTTTATAGAAGCATCAAAGAATTCAGAATTCAGAAGACATGTATCAGAATCCGTACAAGAAATAGAAGACGTTTATTCTTCTCCATTCTTTTCCTCTAACCAAATTCCTCGTGTCTATTTTCTCTTGTAGGGCCGAAATTCGAAAATCAAAGCGTGGCTCAATCGAATTATGGTCGTGTAGCTCGGTGGAAAGAGAAAAAGTGTCTTTCTTCAGAAACCGACTTTTTTTGTTCTCAACACTCGGCTCCTTTTTTTCGCTGAGCAAAAAAGCCCCCACTTTTTTTTTTAGAAAGTGAGTTCAAACTTGTCGAAATAAAAGTAGAGAGAGTACGTC</canonical>
            <polymorphic>TCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCAYGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTATATCTTGCGTATCCTACATTTTATAGAAGCATCAAAGAATTCAGAATTCAGAAGACATGTATCAGAATCCGTACAAGAAATAGAAGACGTTTATTCTTCTCCATTCTTTTCCTCTAACCAAATTCCTCGTGTCTATTTTCTCTTGTAGGGCCGAAATTCGAAAATCAAAGCGTGGCTCAATCGAATTATGGTCGTGTAGCTCGGTGGAAAGAGAAAAAGTGTCTTTCTTCAGAAACCGACTTTTTTTGTTCTCAACACTCGGCTCCTTTTTTTCGCTGAGCAAAAAAGCCCCCACTTTTTTTTTTAGAAAGTGAGTTCAAACTTGTCGAAATAAAAGTAGAGAGAGTACGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>493 296 206 5</canonical_bands>
                <polymorphic_bands>493 296 211</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACAAAGTTGTAGAAACGAGTA</pcr_primer_p1>
		<pcr_primer_p2>ATAGAAAAAGAGGAGGAATCTCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTAT</canonical_amplicon>
		<polymorphic_amplicon>CCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCAYGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2426</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>166788</contig_pos>
        <strand>+</strand>
        <context>TTCTTTTATA[C/T]CTTTTCTCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATA</left_flank>
        <right_flank>CTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAAT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTATATCTTGCGTATCCTACATTTTATAGAAGCATCAAAGAATTCAGAATTCAGAAGACATGTATCAGAATCCGTACAAGAAATAGAAGACGTTTATTCTTCTCCATTCTTTTCCTCTAACCAAATTCCTCGTGTCTATTTTCTCTTGTAGGGCCGAAATTCGAAAATCAAAGCGTGGCTCAATCGAATTATGGTCGTGT</canonical>
            <polymorphic>GTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATAYCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTATATCTTGCGTATCCTACATTTTATAGAAGCATCAAAGAATTCAGAATTCAGAAGACATGTATCAGAATCCGTACAAGAAATAGAAGACGTTTATTCTTCTCCATTCTTTTCCTCTAACCAAATTCCTCGTGTCTATTTTCTCTTGTAGGGCCGAAATTCGAAAATCAAAGCGTGGCTCAATCGAATTATGGTCGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGCCAATGACTCCAAATC</pcr_primer_p1>
		<pcr_primer_p2>TGGCATTCAATTTCATTAGAG</pcr_primer_p2>
		<pcr_amplicon_size>370</pcr_amplicon_size>
		<canonical_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCA</canonical_amplicon>
		<polymorphic_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATAYCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2427</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>166739</contig_pos>
        <strand>+</strand>
        <context>CTTCTATTAG[A/G]GGGCTCTCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAG</left_flank>
        <right_flank>GGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTATATCTTGCGTATCCTACATTTTATAGAAGCATCAAAGAATTCAGAATTCAGAAGACATGTATCAGAATCCGTACAAGAAATAGAAGACGTTTATTCTTCTCCATTCTTTTCCTCTAACCAAATTCCTCGTGTCTATTTTCTCTTGTAG</canonical>
            <polymorphic>TAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGRGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTATATCTTGCGTATCCTACATTTTATAGAAGCATCAAAGAATTCAGAATTCAGAAGACATGTATCAGAATCCGTACAAGAAATAGAAGACGTTTATTCTTCTCCATTCTTTTCCTCTAACCAAATTCCTCGTGTCTATTTTCTCTTGTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGCCAATGACTCCAAATC</pcr_primer_p1>
		<pcr_primer_p2>GCAAGTTGTGGAAAAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGC</canonical_amplicon>
		<polymorphic_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGRGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2433</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>208779</contig_pos>
        <strand></strand>
        <context>GCAGAATAAC[C/T]GACACGAGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCGAAAAAAAAATTTAAGGAACAAAAATTGTTCGGAGCAGCAGAATAAC</left_flank>
        <right_flank>GACACGAGTCTAAGATTTTCAAGAACCTAGAAGTTAGAAATCATCCAGAT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTCGGCTTATTTATTTCTGAAGGGTTCCATATCCCGTAAATTGAGTTTTTGAGAAGTAAGGGAATTGCGATCAGATAATTTTTAGGTTGAAAAAAAGGTTCAGAAGGACATTTTCAAAAGAGTAGAATTTCAGCAATCGCTCTAACAGAAACCCATCCTAACTTTCAGCTCAATTATCTCGGTTCCTTCAAGAGATTTCAAAACATTTTCAACTGAGAAACTACTCATCATATTATCACCAATATTTTATCAGTTTACATATTTTTGATATCTTACGAAGGAACCGAGACAATTAAGCTCGAAGTATCAGGTGGCTTCTACTAGAGCCAAATGGGTGCGGACCAGGATGACCCGAAAACTGTACTTGCCCGTTAGCAATAGATTTCTACCATCTGGAAAAGAATTAGCTCCCATATTAAACCAATTTCCTACTGTATACAATTTGGGACCGAAAAAAAAATTTAAGGAACAAAAATTGTTCGGAGCAGCAGAATAACCGACACGAGTCTAAGATTTTCAAGAACCTAGAAGTTAGAAATCATCCAGATAAAATAAGGAACCTTGACTTATTGTTAGACTAACTGAATCATACCTTAAAAGATCAGGGTTCCTCCAGAACCTTTACTACAAACATTTGTTTTGTGAATTGAACTGAAACTCAATTTTAGGCAAGGTTGGGCCACGGCCGACCGCGGTCGGCCGTCGTTTGGCACTGCCTCGAGTTAAGGACAATTCAAGCAATATTAAGAAAAGAATCACATTAAAATAACTGAATCAAAACCTTGTGAGAAATTTGTCGCAACAAGACCCTCTATGATTGATTGGTTTGATTGATGGACCACTAAAACATAAACAGAATCATCCGCCTCCAGGAACATTAAAAAGTTCATGCCCCAGGATCTCTGATCAGGATCTTGAACAAGAGGTACCTCCTTGTCTGTTTTCAGCCGGGAGAGACCCTATAAAAAAGGTCCAACGGGTTTTATGTCACGTTTCGA</canonical>
            <polymorphic>TACTCGGCTTATTTATTTCTGAAGGGTTCCATATCCCGTAAATTGAGTTTTTGAGAAGTAAGGGAATTGCGATCAGATAATTTTTAGGTTGAAAAAAAGGTTCAGAAGGACATTTTCAAAAGAGTAGAATTTCAGCAATCGCTCTAACAGAAACCCATCCTAACTTTCAGCTCAATTATCTCGGTTCCTTCAAGAGATTTCAAAACATTTTCAACTGAGAAACTACTCATCATATTATCACCAATATTTTATCAGTTTACATATTTTTGATATCTTACGAAGGAACCGAGACAATTAAGCTCGAAGTATCAGGTGGCTTCTACTAGAGCCAAATGGGTGCGGACCAGGATGACCCGAAAACTGTACTTGCCCGTTAGCAATAGATTTCTACCATCTGGAAAAGAATTAGCTCCCATATTAAACCAATTTCCTACTGTATACAATTTGGGACCGAAAAAAAAATTTAAGGAACAAAAATTGTTCGGAGCAGCAGAATAACYGACACGAGTCTAAGATTTTCAAGAACCTAGAAGTTAGAAATCATCCAGATAAAATAAGGAACCTTGACTTATTGTTAGACTAACTGAATCATACCTTAAAAGATCAGGGTTCCTCCAGAACCTTTACTACAAACATTTGTTTTGTGAATTGAACTGAAACTCAATTTTAGGCAAGGTTGGGCCACGGCCGACCGCGGTCGGCCGTCGTTTGGCACTGCCTCGAGTTAAGGACAATTCAAGCAATATTAAGAAAAGAATCACATTAAAATAACTGAATCAAAACCTTGTGAGAAATTTGTCGCAACAAGACCCTCTATGATTGATTGGTTTGATTGATGGACCACTAAAACATAAACAGAATCATCCGCCTCCAGGAACATTAAAAAGTTCATGCCCCAGGATCTCTGATCAGGATCTTGAACAAGAGGTACCTCCTTGTCTGTTTTCAGCCGGGAGAGACCCTATAAAAAAGGTCCAACGGGTTTTATGTCACGTTTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTACCATCTGGAAAAGAATTA</pcr_primer_p1>
		<pcr_primer_p2>TTGTAGTAAAGGTTCTGGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTCTACCATCTGGAAAAGAATTAGCTCCCATATTAAACCAATTTCCTACTGTATACAATTTGGGACCGAAAAAAAAATTTAAGGAACAAAAATTGTTCGGAGCAGCAGAATAACCGACACGAGTCTAAGATTTTCAAGAACCTAGAAGTTAGAAATCATCCAGATAAAATAAGGAACCTTGACTTATTGTTAGACTAACTGAATCATACCTTAAAAGATCAGGGTTCCTCCAGAACCTTTACTACAA</canonical_amplicon>
		<polymorphic_amplicon>TTCTACCATCTGGAAAAGAATTAGCTCCCATATTAAACCAATTTCCTACTGTATACAATTTGGGACCGAAAAAAAAATTTAAGGAACAAAAATTGTTCGGAGCAGCAGAATAACYGACACGAGTCTAAGATTTTCAAGAACCTAGAAGTTAGAAATCATCCAGATAAAATAAGGAACCTTGACTTATTGTTAGACTAACTGAATCATACCTTAAAAGATCAGGGTTCCTCCAGAACCTTTACTACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2434</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>208852</contig_pos>
        <strand></strand>
        <context>CTTGACTTAT[T/A]GTTAGACTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GAACCTAGAAGTTAGAAATCATCCAGATAAAATAAGGAACCTTGACTTAT</left_flank>
        <right_flank>GTTAGACTAACTGAATCATACCTTAAAAGATCAGGGTTCCTCCAGAACCT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGATAATTTTTAGGTTGAAAAAAAGGTTCAGAAGGACATTTTCAAAAGAGTAGAATTTCAGCAATCGCTCTAACAGAAACCCATCCTAACTTTCAGCTCAATTATCTCGGTTCCTTCAAGAGATTTCAAAACATTTTCAACTGAGAAACTACTCATCATATTATCACCAATATTTTATCAGTTTACATATTTTTGATATCTTACGAAGGAACCGAGACAATTAAGCTCGAAGTATCAGGTGGCTTCTACTAGAGCCAAATGGGTGCGGACCAGGATGACCCGAAAACTGTACTTGCCCGTTAGCAATAGATTTCTACCATCTGGAAAAGAATTAGCTCCCATATTAAACCAATTTCCTACTGTATACAATTTGGGACCGAAAAAAAAATTTAAGGAACAAAAATTGTTCGGAGCAGCAGAATAACCGACACGAGTCTAAGATTTTCAAGAACCTAGAAGTTAGAAATCATCCAGATAAAATAAGGAACCTTGACTTATTGTTAGACTAACTGAATCATACCTTAAAAGATCAGGGTTCCTCCAGAACCTTTACTACAAACATTTGTTTTGTGAATTGAACTGAAACTCAATTTTAGGCAAGGTTGGGCCACGGCCGACCGCGGTCGGCCGTCGTTTGGCACTGCCTCGAGTTAAGGACAATTCAAGCAATATTAAGAAAAGAATCACATTAAAATAACTGAATCAAAACCTTGTGAGAAATTTGTCGCAACAAGACCCTCTATGATTGATTGGTTTGATTGATGGACCACTAAAACATAAACAGAATCATCCGCCTCCAGGAACATTAAAAAGTTCATGCCCCAGGATCTCTGATCAGGATCTTGAACAAGAGGTACCTCCTTGTCTGTTTTCAGCCGGGAGAGACCCTATAAAAAAGGTCCAACGGGTTTTATGTCACGTTTCGATGTTGTGTTTTTTTTTCTCTCTCGAAAAAAAAACATCTTTAGAGAACTTTATCTTCTCTTCTTTTCTCTATTC</canonical>
            <polymorphic>CAGATAATTTTTAGGTTGAAAAAAAGGTTCAGAAGGACATTTTCAAAAGAGTAGAATTTCAGCAATCGCTCTAACAGAAACCCATCCTAACTTTCAGCTCAATTATCTCGGTTCCTTCAAGAGATTTCAAAACATTTTCAACTGAGAAACTACTCATCATATTATCACCAATATTTTATCAGTTTACATATTTTTGATATCTTACGAAGGAACCGAGACAATTAAGCTCGAAGTATCAGGTGGCTTCTACTAGAGCCAAATGGGTGCGGACCAGGATGACCCGAAAACTGTACTTGCCCGTTAGCAATAGATTTCTACCATCTGGAAAAGAATTAGCTCCCATATTAAACCAATTTCCTACTGTATACAATTTGGGACCGAAAAAAAAATTTAAGGAACAAAAATTGTTCGGAGCAGCAGAATAACCGACACGAGTCTAAGATTTTCAAGAACCTAGAAGTTAGAAATCATCCAGATAAAATAAGGAACCTTGACTTATWGTTAGACTAACTGAATCATACCTTAAAAGATCAGGGTTCCTCCAGAACCTTTACTACAAACATTTGTTTTGTGAATTGAACTGAAACTCAATTTTAGGCAAGGTTGGGCCACGGCCGACCGCGGTCGGCCGTCGTTTGGCACTGCCTCGAGTTAAGGACAATTCAAGCAATATTAAGAAAAGAATCACATTAAAATAACTGAATCAAAACCTTGTGAGAAATTTGTCGCAACAAGACCCTCTATGATTGATTGGTTTGATTGATGGACCACTAAAACATAAACAGAATCATCCGCCTCCAGGAACATTAAAAAGTTCATGCCCCAGGATCTCTGATCAGGATCTTGAACAAGAGGTACCTCCTTGTCTGTTTTCAGCCGGGAGAGACCCTATAAAAAAGGTCCAACGGGTTTTATGTCACGTTTCGATGTTGTGTTTTTTTTTCTCTCTCGAAAAAAAAACATCTTTAGAGAACTTTATCTTCTCTTCTTTTCTCTATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACGAGTCTAAGATTTTCAAGA</pcr_primer_p1>
		<pcr_primer_p2>CTTAATATTGCTTGAATTGTCCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACACGAGTCTAAGATTTTCAAGAACCTAGAAGTTAGAAATCATCCAGATAAAATAAGGAACCTTGACTTATTGTTAGACTAACTGAATCATACCTTAAAAGATCAGGGTTCCTCCAGAACCTTTACTACAAACATTTGTTTTGTGAATTGAACTGAAACTCAATTTTAGGCAAGGTTGGGCCACGGCCGACCGCGGTCGGCCGTCGTTTGGCACTGCCTCGAGTTAAGGACAATTCAAGCAATATTAAG</canonical_amplicon>
		<polymorphic_amplicon>ACACGAGTCTAAGATTTTCAAGAACCTAGAAGTTAGAAATCATCCAGATAAAATAAGGAACCTTGACTTATWGTTAGACTAACTGAATCATACCTTAAAAGATCAGGGTTCCTCCAGAACCTTTACTACAAACATTTGTTTTGTGAATTGAACTGAAACTCAATTTTAGGCAAGGTTGGGCCACGGCCGACCGCGGTCGGCCGTCGTTTGGCACTGCCTCGAGTTAAGGACAATTCAAGCAATATTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2435</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>208929</contig_pos>
        <strand></strand>
        <context>TTTTGTGAAT[T/C]GAACTGAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAGATCAGGGTTCCTCCAGAACCTTTACTACAAACATTTGTTTTGTGAAT</left_flank>
        <right_flank>GAACTGAAACTCAATTTTAGGCAAGGTTGGGCCACGGCCGACCGCGGTCG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACCCATCCTAACTTTCAGCTCAATTATCTCGGTTCCTTCAAGAGATTTCAAAACATTTTCAACTGAGAAACTACTCATCATATTATCACCAATATTTTATCAGTTTACATATTTTTGATATCTTACGAAGGAACCGAGACAATTAAGCTCGAAGTATCAGGTGGCTTCTACTAGAGCCAAATGGGTGCGGACCAGGATGACCCGAAAACTGTACTTGCCCGTTAGCAATAGATTTCTACCATCTGGAAAAGAATTAGCTCCCATATTAAACCAATTTCCTACTGTATACAATTTGGGACCGAAAAAAAAATTTAAGGAACAAAAATTGTTCGGAGCAGCAGAATAACCGACACGAGTCTAAGATTTTCAAGAACCTAGAAGTTAGAAATCATCCAGATAAAATAAGGAACCTTGACTTATTGTTAGACTAACTGAATCATACCTTAAAAGATCAGGGTTCCTCCAGAACCTTTACTACAAACATTTGTTTTGTGAATTGAACTGAAACTCAATTTTAGGCAAGGTTGGGCCACGGCCGACCGCGGTCGGCCGTCGTTTGGCACTGCCTCGAGTTAAGGACAATTCAAGCAATATTAAGAAAAGAATCACATTAAAATAACTGAATCAAAACCTTGTGAGAAATTTGTCGCAACAAGACCCTCTATGATTGATTGGTTTGATTGATGGACCACTAAAACATAAACAGAATCATCCGCCTCCAGGAACATTAAAAAGTTCATGCCCCAGGATCTCTGATCAGGATCTTGAACAAGAGGTACCTCCTTGTCTGTTTTCAGCCGGGAGAGACCCTATAAAAAAGGTCCAACGGGTTTTATGTCACGTTTCGATGTTGTGTTTTTTTTTCTCTCTCGAAAAAAAAACATCTTTAGAGAACTTTATCTTCTCTTCTTTTCTCTATTCCTCTTCTCCCTATCATCATCTCTTCTTGTCCATTTCTTCCAACCTGATCTATTTTCAACACAATTTCCAGCGGTCAC</canonical>
            <polymorphic>AAACCCATCCTAACTTTCAGCTCAATTATCTCGGTTCCTTCAAGAGATTTCAAAACATTTTCAACTGAGAAACTACTCATCATATTATCACCAATATTTTATCAGTTTACATATTTTTGATATCTTACGAAGGAACCGAGACAATTAAGCTCGAAGTATCAGGTGGCTTCTACTAGAGCCAAATGGGTGCGGACCAGGATGACCCGAAAACTGTACTTGCCCGTTAGCAATAGATTTCTACCATCTGGAAAAGAATTAGCTCCCATATTAAACCAATTTCCTACTGTATACAATTTGGGACCGAAAAAAAAATTTAAGGAACAAAAATTGTTCGGAGCAGCAGAATAACCGACACGAGTCTAAGATTTTCAAGAACCTAGAAGTTAGAAATCATCCAGATAAAATAAGGAACCTTGACTTATTGTTAGACTAACTGAATCATACCTTAAAAGATCAGGGTTCCTCCAGAACCTTTACTACAAACATTTGTTTTGTGAATYGAACTGAAACTCAATTTTAGGCAAGGTTGGGCCACGGCCGACCGCGGTCGGCCGTCGTTTGGCACTGCCTCGAGTTAAGGACAATTCAAGCAATATTAAGAAAAGAATCACATTAAAATAACTGAATCAAAACCTTGTGAGAAATTTGTCGCAACAAGACCCTCTATGATTGATTGGTTTGATTGATGGACCACTAAAACATAAACAGAATCATCCGCCTCCAGGAACATTAAAAAGTTCATGCCCCAGGATCTCTGATCAGGATCTTGAACAAGAGGTACCTCCTTGTCTGTTTTCAGCCGGGAGAGACCCTATAAAAAAGGTCCAACGGGTTTTATGTCACGTTTCGATGTTGTGTTTTTTTTTCTCTCTCGAAAAAAAAACATCTTTAGAGAACTTTATCTTCTCTTCTTTTCTCTATTCCTCTTCTCCCTATCATCATCTCTTCTTGTCCATTTCTTCCAACCTGATCTATTTTCAACACAATTTCCAGCGGTCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>342 171 119 111 70 60 23 21 19 17 16 16 15</canonical_bands>
                <polymorphic_bands>342 187 119 111 70 60 23 21 19 17 16 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACACGAGTCTAAGATTTTCAAGA</pcr_primer_p1>
		<pcr_primer_p2>CTTAATATTGCTTGAATTGTCCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACACGAGTCTAAGATTTTCAAGAACCTAGAAGTTAGAAATCATCCAGATAAAATAAGGAACCTTGACTTATTGTTAGACTAACTGAATCATACCTTAAAAGATCAGGGTTCCTCCAGAACCTTTACTACAAACATTTGTTTTGTGAATTGAACTGAAACTCAATTTTAGGCAAGGTTGGGCCACGGCCGACCGCGGTCGGCCGTCGTTTGGCACTGCCTCGAGTTAAGGACAATTCAAGCAATATTAAG</canonical_amplicon>
		<polymorphic_amplicon>ACACGAGTCTAAGATTTTCAAGAACCTAGAAGTTAGAAATCATCCAGATAAAATAAGGAACCTTGACTTATTGTTAGACTAACTGAATCATACCTTAAAAGATCAGGGTTCCTCCAGAACCTTTACTACAAACATTTGTTTTGTGAATYGAACTGAAACTCAATTTTAGGCAAGGTTGGGCCACGGCCGACCGCGGTCGGCCGTCGTTTGGCACTGCCTCGAGTTAAGGACAATTCAAGCAATATTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2436</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>209030</contig_pos>
        <strand></strand>
        <context>CAATATTAAG[A/G]AAAGAATCAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCGTCGTTTGGCACTGCCTCGAGTTAAGGACAATTCAAGCAATATTAAG</left_flank>
        <right_flank>AAAGAATCACATTAAAATAACTGAATCAAAACCTTGTGAGAAATTTGTCG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGTTTACATATTTTTGATATCTTACGAAGGAACCGAGACAATTAAGCTCGAAGTATCAGGTGGCTTCTACTAGAGCCAAATGGGTGCGGACCAGGATGACCCGAAAACTGTACTTGCCCGTTAGCAATAGATTTCTACCATCTGGAAAAGAATTAGCTCCCATATTAAACCAATTTCCTACTGTATACAATTTGGGACCGAAAAAAAAATTTAAGGAACAAAAATTGTTCGGAGCAGCAGAATAACCGACACGAGTCTAAGATTTTCAAGAACCTAGAAGTTAGAAATCATCCAGATAAAATAAGGAACCTTGACTTATTGTTAGACTAACTGAATCATACCTTAAAAGATCAGGGTTCCTCCAGAACCTTTACTACAAACATTTGTTTTGTGAATTGAACTGAAACTCAATTTTAGGCAAGGTTGGGCCACGGCCGACCGCGGTCGGCCGTCGTTTGGCACTGCCTCGAGTTAAGGACAATTCAAGCAATATTAAGAAAAGAATCACATTAAAATAACTGAATCAAAACCTTGTGAGAAATTTGTCGCAACAAGACCCTCTATGATTGATTGGTTTGATTGATGGACCACTAAAACATAAACAGAATCATCCGCCTCCAGGAACATTAAAAAGTTCATGCCCCAGGATCTCTGATCAGGATCTTGAACAAGAGGTACCTCCTTGTCTGTTTTCAGCCGGGAGAGACCCTATAAAAAAGGTCCAACGGGTTTTATGTCACGTTTCGATGTTGTGTTTTTTTTTCTCTCTCGAAAAAAAAACATCTTTAGAGAACTTTATCTTCTCTTCTTTTCTCTATTCCTCTTCTCCCTATCATCATCTCTTCTTGTCCATTTCTTCCAACCTGATCTATTTTCAACACAATTTCCAGCGGTCACACACACGTGCTCCAAACTCATCGGCGTCTGGAATTGGGTTTCTCCCCAGTGATGGGTGAAAAACATTTTTGATACAAGGACCCCAACAAACAATTTCCATG</canonical>
            <polymorphic>TCAGTTTACATATTTTTGATATCTTACGAAGGAACCGAGACAATTAAGCTCGAAGTATCAGGTGGCTTCTACTAGAGCCAAATGGGTGCGGACCAGGATGACCCGAAAACTGTACTTGCCCGTTAGCAATAGATTTCTACCATCTGGAAAAGAATTAGCTCCCATATTAAACCAATTTCCTACTGTATACAATTTGGGACCGAAAAAAAAATTTAAGGAACAAAAATTGTTCGGAGCAGCAGAATAACCGACACGAGTCTAAGATTTTCAAGAACCTAGAAGTTAGAAATCATCCAGATAAAATAAGGAACCTTGACTTATTGTTAGACTAACTGAATCATACCTTAAAAGATCAGGGTTCCTCCAGAACCTTTACTACAAACATTTGTTTTGTGAATTGAACTGAAACTCAATTTTAGGCAAGGTTGGGCCACGGCCGACCGCGGTCGGCCGTCGTTTGGCACTGCCTCGAGTTAAGGACAATTCAAGCAATATTAAGRAAAGAATCACATTAAAATAACTGAATCAAAACCTTGTGAGAAATTTGTCGCAACAAGACCCTCTATGATTGATTGGTTTGATTGATGGACCACTAAAACATAAACAGAATCATCCGCCTCCAGGAACATTAAAAAGTTCATGCCCCAGGATCTCTGATCAGGATCTTGAACAAGAGGTACCTCCTTGTCTGTTTTCAGCCGGGAGAGACCCTATAAAAAAGGTCCAACGGGTTTTATGTCACGTTTCGATGTTGTGTTTTTTTTTCTCTCTCGAAAAAAAAACATCTTTAGAGAACTTTATCTTCTCTTCTTTTCTCTATTCCTCTTCTCCCTATCATCATCTCTTCTTGTCCATTTCTTCCAACCTGATCTATTTTCAACACAATTTCCAGCGGTCACACACACGTGCTCCAAACTCATCGGCGTCTGGAATTGGGTTTCTCCCCAGTGATGGGTGAAAAACATTTTTGATACAAGGACCCCAACAAACAATTTCCATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCAGAACCTTTACTACAAACA</pcr_primer_p1>
		<pcr_primer_p2>TTATGTTTTAGTGGTCCATCAAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CTCCAGAACCTTTACTACAAACATTTGTTTTGTGAATTGAACTGAAACTCAATTTTAGGCAAGGTTGGGCCACGGCCGACCGCGGTCGGCCGTCGTTTGGCACTGCCTCGAGTTAAGGACAATTCAAGCAATATTAAGAAAAGAATCACATTAAAATAACTGAATCAAAACCTTGTGAGAAATTTGTCGCAACAAGACCCTCTATGATTGATTGGTTTGATTGATGGACCACTAAAACATAA</canonical_amplicon>
		<polymorphic_amplicon>CTCCAGAACCTTTACTACAAACATTTGTTTTGTGAATTGAACTGAAACTCAATTTTAGGCAAGGTTGGGCCACGGCCGACCGCGGTCGGCCGTCGTTTGGCACTGCCTCGAGTTAAGGACAATTCAAGCAATATTAAGRAAAGAATCACATTAAAATAACTGAATCAAAACCTTGTGAGAAATTTGTCGCAACAAGACCCTCTATGATTGATTGGTTTGATTGATGGACCACTAAAACATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2437</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>209151</contig_pos>
        <strand></strand>
        <context>CATCCGCCTC[C/A]AGGAACATTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GATTGGTTTGATTGATGGACCACTAAAACATAAACAGAATCATCCGCCTC</left_flank>
        <right_flank>AGGAACATTAAAAAGTTCATGCCCCAGGATCTCTGATCAGGATCTTGAAC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTAGCAATAGATTTCTACCATCTGGAAAAGAATTAGCTCCCATATTAAACCAATTTCCTACTGTATACAATTTGGGACCGAAAAAAAAATTTAAGGAACAAAAATTGTTCGGAGCAGCAGAATAACCGACACGAGTCTAAGATTTTCAAGAACCTAGAAGTTAGAAATCATCCAGATAAAATAAGGAACCTTGACTTATTGTTAGACTAACTGAATCATACCTTAAAAGATCAGGGTTCCTCCAGAACCTTTACTACAAACATTTGTTTTGTGAATTGAACTGAAACTCAATTTTAGGCAAGGTTGGGCCACGGCCGACCGCGGTCGGCCGTCGTTTGGCACTGCCTCGAGTTAAGGACAATTCAAGCAATATTAAGAAAAGAATCACATTAAAATAACTGAATCAAAACCTTGTGAGAAATTTGTCGCAACAAGACCCTCTATGATTGATTGGTTTGATTGATGGACCACTAAAACATAAACAGAATCATCCGCCTCCAGGAACATTAAAAAGTTCATGCCCCAGGATCTCTGATCAGGATCTTGAACAAGAGGTACCTCCTTGTCTGTTTTCAGCCGGGAGAGACCCTATAAAAAAGGTCCAACGGGTTTTATGTCACGTTTCGATGTTGTGTTTTTTTTTCTCTCTCGAAAAAAAAACATCTTTAGAGAACTTTATCTTCTCTTCTTTTCTCTATTCCTCTTCTCCCTATCATCATCTCTTCTTGTCCATTTCTTCCAACCTGATCTATTTTCAACACAATTTCCAGCGGTCACACACACGTGCTCCAAACTCATCGGCGTCTGGAATTGGGTTTCTCCCCAGTGATGGGTGAAAAACATTTTTGATACAAGGACCCCAACAAACAATTTCCATGGAAGAGAAAGAACCCCAAACGCTTTCTTTCTATGAAAAAAAAATTCGGCTCGCGTAAGTTGTTACTCTCACAAGAAATTGAATTGTGTTTACGTGTATGGGAATAAGGGTAAGAGCAAGAA</canonical>
            <polymorphic>GTTAGCAATAGATTTCTACCATCTGGAAAAGAATTAGCTCCCATATTAAACCAATTTCCTACTGTATACAATTTGGGACCGAAAAAAAAATTTAAGGAACAAAAATTGTTCGGAGCAGCAGAATAACCGACACGAGTCTAAGATTTTCAAGAACCTAGAAGTTAGAAATCATCCAGATAAAATAAGGAACCTTGACTTATTGTTAGACTAACTGAATCATACCTTAAAAGATCAGGGTTCCTCCAGAACCTTTACTACAAACATTTGTTTTGTGAATTGAACTGAAACTCAATTTTAGGCAAGGTTGGGCCACGGCCGACCGCGGTCGGCCGTCGTTTGGCACTGCCTCGAGTTAAGGACAATTCAAGCAATATTAAGAAAAGAATCACATTAAAATAACTGAATCAAAACCTTGTGAGAAATTTGTCGCAACAAGACCCTCTATGATTGATTGGTTTGATTGATGGACCACTAAAACATAAACAGAATCATCCGCCTCMAGGAACATTAAAAAGTTCATGCCCCAGGATCTCTGATCAGGATCTTGAACAAGAGGTACCTCCTTGTCTGTTTTCAGCCGGGAGAGACCCTATAAAAAAGGTCCAACGGGTTTTATGTCACGTTTCGATGTTGTGTTTTTTTTTCTCTCTCGAAAAAAAAACATCTTTAGAGAACTTTATCTTCTCTTCTTTTCTCTATTCCTCTTCTCCCTATCATCATCTCTTCTTGTCCATTTCTTCCAACCTGATCTATTTTCAACACAATTTCCAGCGGTCACACACACGTGCTCCAAACTCATCGGCGTCTGGAATTGGGTTTCTCCCCAGTGATGGGTGAAAAACATTTTTGATACAAGGACCCCAACAAACAATTTCCATGGAAGAGAAAGAACCCCAAACGCTTTCTTTCTATGAAAAAAAAATTCGGCTCGCGTAAGTTGTTACTCTCACAAGAAATTGAATTGTGTTTACGTGTATGGGAATAAGGGTAAGAGCAAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>500 421 54 25</canonical_bands>
                <polymorphic_bands>525 421 54</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>500 475 25</canonical_bands>
                <polymorphic_bands>525 475</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCACATTAAAATAACTGAATCAAAA</pcr_primer_p1>
		<pcr_primer_p2>AACATCGAAACGTGACATAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCACATTAAAATAACTGAATCAAAACCTTGTGAGAAATTTGTCGCAACAAGACCCTCTATGATTGATTGGTTTGATTGATGGACCACTAAAACATAAACAGAATCATCCGCCTCCAGGAACATTAAAAAGTTCATGCCCCAGGATCTCTGATCAGGATCTTGAACAAGAGGTACCTCCTTGTCTGTTTTCAGCCGGGAGAGACCCTATAAAAAAGGTCCAACGGGTTTTATGTCACGTTTCGATGTT</canonical_amplicon>
		<polymorphic_amplicon>TCACATTAAAATAACTGAATCAAAACCTTGTGAGAAATTTGTCGCAACAAGACCCTCTATGATTGATTGGTTTGATTGATGGACCACTAAAACATAAACAGAATCATCCGCCTCMAGGAACATTAAAAAGTTCATGCCCCAGGATCTCTGATCAGGATCTTGAACAAGAGGTACCTCCTTGTCTGTTTTCAGCCGGGAGAGACCCTATAAAAAAGGTCCAACGGGTTTTATGTCACGTTTCGATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2444</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>85444</contig_pos>
        <strand>+</strand>
        <context>GCTTGGTTGA[C/T]AAGGTCCCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGTTATCGAATGAGACTCCTTCGCTCAAATACATACAAGCTTGGTTGA</left_flank>
        <right_flank>AAGGTCCCCAGCATCGTGGTCAGGATTTTCGAAGGCAGCATTGATGAGTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCCGCTTGGGTTGAGCATTGCGTTTGCCCAGAACATTGCGATCGGATCTTCAATTCCACCCATCCACGAGTTGTTGAAACCGTTGAGTGCGGCTGGTTGGAGCAAGTTGCTGTGCTCTTGTGGTTGATGGATTTGTGGAGGATTTGGTGGAGGGATCTGGATGGTGGGCGTCGTACTGAATGGAGATTCTACTTTAACCATTGAGATGGAGTTATTAAGGAGGGGAAGGAATCCAGTGATATCGTTGTCCATTCTTTGCATTTTGAATACATTCTCATCTTCCTCCTAGAATAGATAAAAAATCAGGTACTGTTACGAAATATTGTTATTCCTCACCTCAATTTCAATTTTCATTCTTTTCAATGGGTTTGTGGACGTCTTGCTCTTTGGCTTTCTTGGCTTGCCTTCCTTATTTCTGGCAGATACTAGGCTCTTTTTCAGGCTTTCTTTGTTATCGAATGAGACTCCTTCGCTCAAATACATACAAGCTTGGTTGATAAGGTCCCCAGCATCGTGGTCAGGATTTTCGAAGGCAGCATTGATGAGTTGTGACTGAAAAGAAACTTTGTTTAGCTTGATGGAATCTCCGTAGAAGGTCAAACAGATTTTTCAAATTTCAAATTTTGCTTTTCATCGTGTGTGGCGGCGGTGAATTGCGTCACTATTGACCTCTTCCGCGACGACCCAATACTCGCCCTCTCCCGAATTTCAATAAAAGTTCATACCACGGACAATTTGAATGGCATCGTTCGACTGCGCAATAGATCGGAGGATAAAAGAAGAATTGGCGCATCTAGGTTAACGATTCGGGTGGTAGGGCGCGGCCTGGCCCCGGCGCTTGCCGATTGCCATTCACGGCTTGACCTTGGCAAAAGCGTGCGGATCGGGCTGATGTTTGCGAATTATTTGCGGTTCAACGGAAGCGCCTCCTGTGGATTGCGACACACACCTGGGACGGGAAGGCCAAAAGTTTTGCCGCCGCCGTGCCACGCGCGAAA</canonical>
            <polymorphic>AGTCCGCTTGGGTTGAGCATTGCGTTTGCCCAGAACATTGCGATCGGATCTTCAATTCCACCCATCCACGAGTTGTTGAAACCGTTGAGTGCGGCTGGTTGGAGCAAGTTGCTGTGCTCTTGTGGTTGATGGATTTGTGGAGGATTTGGTGGAGGGATCTGGATGGTGGGCGTCGTACTGAATGGAGATTCTACTTTAACCATTGAGATGGAGTTATTAAGGAGGGGAAGGAATCCAGTGATATCGTTGTCCATTCTTTGCATTTTGAATACATTCTCATCTTCCTCCTAGAATAGATAAAAAATCAGGTACTGTTACGAAATATTGTTATTCCTCACCTCAATTTCAATTTTCATTCTTTTCAATGGGTTTGTGGACGTCTTGCTCTTTGGCTTTCTTGGCTTGCCTTCCTTATTTCTGGCAGATACTAGGCTCTTTTTCAGGCTTTCTTTGTTATCGAATGAGACTCCTTCGCTCAAATACATACAAGCTTGGTTGAYAAGGTCCCCAGCATCGTGGTCAGGATTTTCGAAGGCAGCATTGATGAGTTGTGACTGAAAAGAAACTTTGTTTAGCTTGATGGAATCTCCGTAGAAGGTCAAACAGATTTTTCAAATTTCAAATTTTGCTTTTCATCGTGTGTGGCGGCGGTGAATTGCGTCACTATTGACCTCTTCCGCGACGACCCAATACTCGCCCTCTCCCGAATTTCAATAAAAGTTCATACCACGGACAATTTGAATGGCATCGTTCGACTGCGCAATAGATCGGAGGATAAAAGAAGAATTGGCGCATCTAGGTTAACGATTCGGGTGGTAGGGCGCGGCCTGGCCCCGGCGCTTGCCGATTGCCATTCACGGCTTGACCTTGGCAAAAGCGTGCGGATCGGGCTGATGTTTGCGAATTATTTGCGGTTCAACGGAAGCGCCTCCTGTGGATTGCGACACACACCTGGGACGGGAAGGCCAAAAGTTTTGCCGCCGCCGTGCCACGCGCGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATTGTTATTCCTCACCTCAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTTTCTTTTCAGTCACAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATATTGTTATTCCTCACCTCAATTTCAATTTTCATTCTTTTCAATGGGTTTGTGGACGTCTTGCTCTTTGGCTTTCTTGGCTTGCCTTCCTTATTTCTGGCAGATACTAGGCTCTTTTTCAGGCTTTCTTTGTTATCGAATGAGACTCCTTCGCTCAAATACATACAAGCTTGGTTGATAAGGTCCCCAGCATCGTGGTCAGGATTTTCGAAGGCAGCATTGATGAGTTGTGACTGAAAAGAAACTTTG</canonical_amplicon>
		<polymorphic_amplicon>AATATTGTTATTCCTCACCTCAATTTCAATTTTCATTCTTTTCAATGGGTTTGTGGACGTCTTGCTCTTTGGCTTTCTTGGCTTGCCTTCCTTATTTCTGGCAGATACTAGGCTCTTTTTCAGGCTTTCTTTGTTATCGAATGAGACTCCTTCGCTCAAATACATACAAGCTTGGTTGAYAAGGTCCCCAGCATCGTGGTCAGGATTTTCGAAGGCAGCATTGATGAGTTGTGACTGAAAAGAAACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2445</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>88336</contig_pos>
        <strand>+</strand>
        <context>TATAGTAAAG[A/G]CATAGGCGCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTACTTTGGAATATTCCGAGAATCGTGTGGCGCGGAAGATATAGTAAAG</left_flank>
        <right_flank>CATAGGCGCGAGGTATATAACGAGTACCGTTTTAAGTTTCACTTTTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGACCGACAGGTAGAAGAGAGGCACATACATTAACTACTGACTATACGGAAATTGGCGAGAAACATGTGTCGAAACGAGATTGACACATTCTCATCATGTTCGAATTTGGTAACTTGCGGTTAGTTGGGGTTGGTAGAGAATAGTTAACAAAATGAAATTGACAGTTGTTAAAAAAGAAAAAGAGATATTCGAAATGTTTTAGAAGAAAATGCATAGTAATGGAAAGTTTTTCGATCTCATTATTCATTTGACAACGGAGATAAAGAAAGAAAATGTTGATATCGCGGGAAGAGAGTAATACAGTAACCAGTTTCGATGGCACACATTCCGCAACATGCAAGGAAAATGGTGGTGCCGGGGTGCGCGGCGGCGGCTTTTGACTTCGTTTGACCCACAATCTCCTCCTTCCTTATTCCCGTCCGCCTGATCATAATACTTTTTTGACCGCTTACTTTGGAATATTCCGAGAATCGTGTGGCGCGGAAGATATAGTAAAGGCATAGGCGCGAGGTATATAACGAGTACCGTTTTAAGTTTCACTTTTTTTTTGTTTTGACGGAGTGGCGCGAGAGAGGGGGTCATCGACGAAGTGAAAGTTTTTGAGGAGTAAAAATGACCAGGAATGGACAGTGCTGCGAGTTTTGGTAAATAAGCACCGAACAGACTGCGAAAAGCTATTATAGTTTGGGATGAATGCCAGCGCGGCGATTACCAGGAAAAAAAGGGGGACCGCCCCGCATGACCTGCGCGGAAGACACGGATTGACACCGGATTGATGGATTCGGGAGGAAAGGCAAAAAACCGCAAAATTAGGTAATTGTCAGGCGCGAGATTTGGATCATCACATTGGCGGAAGCCATTGTCAATTGCTTGACCGCTGCGGGTGGCACGGTCAGGCCCGCACAACCTTGGAAGGTACGATTACAGGGTGGGGGATGTTGCAAAAATGTTTCGGTCTTCTTTTTCTACGTCTTCTCATTTCCCTTGAAAAGTGCAAG</canonical>
            <polymorphic>GTGACCGACAGGTAGAAGAGAGGCACATACATTAACTACTGACTATACGGAAATTGGCGAGAAACATGTGTCGAAACGAGATTGACACATTCTCATCATGTTCGAATTTGGTAACTTGCGGTTAGTTGGGGTTGGTAGAGAATAGTTAACAAAATGAAATTGACAGTTGTTAAAAAAGAAAAAGAGATATTCGAAATGTTTTAGAAGAAAATGCATAGTAATGGAAAGTTTTTCGATCTCATTATTCATTTGACAACGGAGATAAAGAAAGAAAATGTTGATATCGCGGGAAGAGAGTAATACAGTAACCAGTTTCGATGGCACACATTCCGCAACATGCAAGGAAAATGGTGGTGCCGGGGTGCGCGGCGGCGGCTTTTGACTTCGTTTGACCCACAATCTCCTCCTTCCTTATTCCCGTCCGCCTGATCATAATACTTTTTTGACCGCTTACTTTGGAATATTCCGAGAATCGTGTGGCGCGGAAGATATAGTAAAGRCATAGGCGCGAGGTATATAACGAGTACCGTTTTAAGTTTCACTTTTTTTTTGTTTTGACGGAGTGGCGCGAGAGAGGGGGTCATCGACGAAGTGAAAGTTTTTGAGGAGTAAAAATGACCAGGAATGGACAGTGCTGCGAGTTTTGGTAAATAAGCACCGAACAGACTGCGAAAAGCTATTATAGTTTGGGATGAATGCCAGCGCGGCGATTACCAGGAAAAAAAGGGGGACCGCCCCGCATGACCTGCGCGGAAGACACGGATTGACACCGGATTGATGGATTCGGGAGGAAAGGCAAAAAACCGCAAAATTAGGTAATTGTCAGGCGCGAGATTTGGATCATCACATTGGCGGAAGCCATTGTCAATTGCTTGACCGCTGCGGGTGGCACGGTCAGGCCCGCACAACCTTGGAAGGTACGATTACAGGGTGGGGGATGTTGCAAAAATGTTTCGGTCTTCTTTTTCTACGTCTTCTCATTTCCCTTGAAAAGTGCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCCGCCTGATCATAATACTT</pcr_primer_p1>
		<pcr_primer_p2>AGTCTGTTCGGTGCTTATTTAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCCGCCTGATCATAATACTTTTTTGACCGCTTACTTTGGAATATTCCGAGAATCGTGTGGCGCGGAAGATATAGTAAAGGCATAGGCGCGAGGTATATAACGAGTACCGTTTTAAGTTTCACTTTTTTTTTGTTTTGACGGAGTGGCGCGAGAGAGGGGGTCATCGACGAAGTGAAAGTTTTTGAGGAGTAAAAATGACCAGGAATGGACAGTGCTGCGAGTTTTGGTAAATAAGCACCGAACAGACT</canonical_amplicon>
		<polymorphic_amplicon>GTCCGCCTGATCATAATACTTTTTTGACCGCTTACTTTGGAATATTCCGAGAATCGTGTGGCGCGGAAGATATAGTAAAGRCATAGGCGCGAGGTATATAACGAGTACCGTTTTAAGTTTCACTTTTTTTTTGTTTTGACGGAGTGGCGCGAGAGAGGGGGTCATCGACGAAGTGAAAGTTTTTGAGGAGTAAAAATGACCAGGAATGGACAGTGCTGCGAGTTTTGGTAAATAAGCACCGAACAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2446</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>88287</contig_pos>
        <strand>+</strand>
        <context>TTTTGACCGC[C/T]TACTTTGGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCCTCCTTCCTTATTCCCGTCCGCCTGATCATAATACTTTTTTGACCGC</left_flank>
        <right_flank>TACTTTGGAATATTCCGAGAATCGTGTGGCGCGGAAGATATAGTAAAGGC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAGAGAGGTAAACGGTAGCCGGGAGTAGAGAAAAATAGGAAGGATGAGTGACCGACAGGTAGAAGAGAGGCACATACATTAACTACTGACTATACGGAAATTGGCGAGAAACATGTGTCGAAACGAGATTGACACATTCTCATCATGTTCGAATTTGGTAACTTGCGGTTAGTTGGGGTTGGTAGAGAATAGTTAACAAAATGAAATTGACAGTTGTTAAAAAAGAAAAAGAGATATTCGAAATGTTTTAGAAGAAAATGCATAGTAATGGAAAGTTTTTCGATCTCATTATTCATTTGACAACGGAGATAAAGAAAGAAAATGTTGATATCGCGGGAAGAGAGTAATACAGTAACCAGTTTCGATGGCACACATTCCGCAACATGCAAGGAAAATGGTGGTGCCGGGGTGCGCGGCGGCGGCTTTTGACTTCGTTTGACCCACAATCTCCTCCTTCCTTATTCCCGTCCGCCTGATCATAATACTTTTTTGACCGCTTACTTTGGAATATTCCGAGAATCGTGTGGCGCGGAAGATATAGTAAAGGCATAGGCGCGAGGTATATAACGAGTACCGTTTTAAGTTTCACTTTTTTTTTGTTTTGACGGAGTGGCGCGAGAGAGGGGGTCATCGACGAAGTGAAAGTTTTTGAGGAGTAAAAATGACCAGGAATGGACAGTGCTGCGAGTTTTGGTAAATAAGCACCGAACAGACTGCGAAAAGCTATTATAGTTTGGGATGAATGCCAGCGCGGCGATTACCAGGAAAAAAAGGGGGACCGCCCCGCATGACCTGCGCGGAAGACACGGATTGACACCGGATTGATGGATTCGGGAGGAAAGGCAAAAAACCGCAAAATTAGGTAATTGTCAGGCGCGAGATTTGGATCATCACATTGGCGGAAGCCATTGTCAATTGCTTGACCGCTGCGGGTGGCACGGTCAGGCCCGCACAACCTTGGAAGGTACGATTACAGGGTGGGGGATGTTGCAAAAATG</canonical>
            <polymorphic>GAGAGAGAGGTAAACGGTAGCCGGGAGTAGAGAAAAATAGGAAGGATGAGTGACCGACAGGTAGAAGAGAGGCACATACATTAACTACTGACTATACGGAAATTGGCGAGAAACATGTGTCGAAACGAGATTGACACATTCTCATCATGTTCGAATTTGGTAACTTGCGGTTAGTTGGGGTTGGTAGAGAATAGTTAACAAAATGAAATTGACAGTTGTTAAAAAAGAAAAAGAGATATTCGAAATGTTTTAGAAGAAAATGCATAGTAATGGAAAGTTTTTCGATCTCATTATTCATTTGACAACGGAGATAAAGAAAGAAAATGTTGATATCGCGGGAAGAGAGTAATACAGTAACCAGTTTCGATGGCACACATTCCGCAACATGCAAGGAAAATGGTGGTGCCGGGGTGCGCGGCGGCGGCTTTTGACTTCGTTTGACCCACAATCTCCTCCTTCCTTATTCCCGTCCGCCTGATCATAATACTTTTTTGACCGCYTACTTTGGAATATTCCGAGAATCGTGTGGCGCGGAAGATATAGTAAAGGCATAGGCGCGAGGTATATAACGAGTACCGTTTTAAGTTTCACTTTTTTTTTGTTTTGACGGAGTGGCGCGAGAGAGGGGGTCATCGACGAAGTGAAAGTTTTTGAGGAGTAAAAATGACCAGGAATGGACAGTGCTGCGAGTTTTGGTAAATAAGCACCGAACAGACTGCGAAAAGCTATTATAGTTTGGGATGAATGCCAGCGCGGCGATTACCAGGAAAAAAAGGGGGACCGCCCCGCATGACCTGCGCGGAAGACACGGATTGACACCGGATTGATGGATTCGGGAGGAAAGGCAAAAAACCGCAAAATTAGGTAATTGTCAGGCGCGAGATTTGGATCATCACATTGGCGGAAGCCATTGTCAATTGCTTGACCGCTGCGGGTGGCACGGTCAGGCCCGCACAACCTTGGAAGGTACGATTACAGGGTGGGGGATGTTGCAAAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAATCTCCTCCTTCCTTATTC</pcr_primer_p1>
		<pcr_primer_p2>ATTCCTGGTCATTTTTACTCCT</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>ACAATCTCCTCCTTCCTTATTCCCGTCCGCCTGATCATAATACTTTTTTGACCGCTTACTTTGGAATATTCCGAGAATCGTGTGGCGCGGAAGATATAGTAAAGGCATAGGCGCGAGGTATATAACGAGTACCGTTTTAAGTTTCACTTTTTTTTTGTTTTGACGGAGTGGCGCGAGAGAGGGGGTCATCGACGAAGTGAAAGTTTTTGAGGAGTAAAAATGACCAGGAAT</canonical_amplicon>
		<polymorphic_amplicon>ACAATCTCCTCCTTCCTTATTCCCGTCCGCCTGATCATAATACTTTTTTGACCGCYTACTTTGGAATATTCCGAGAATCGTGTGGCGCGGAAGATATAGTAAAGGCATAGGCGCGAGGTATATAACGAGTACCGTTTTAAGTTTCACTTTTTTTTTGTTTTGACGGAGTGGCGCGAGAGAGGGGGTCATCGACGAAGTGAAAGTTTTTGAGGAGTAAAAATGACCAGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2498</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>334413</contig_pos>
        <strand>+</strand>
        <context>ATTATAATAA[A/T]TGTATGTGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGACTGAACGATCATTAACCGTCGCTCCTCTAATCAATCATTATAATAA</left_flank>
        <right_flank>TGTATGTGTGCATTTTGATAACCACCACCAACCCATCCAACAATCAAGTT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAATCGCGAAAATCTTAAGAGCTACGGTCTGCATTTTTTCGTGATTGTGATTGCTGCAGAAACTACAGGTGGAAAATTAGTGATCAACAGTATGTACAGTACTATTCCTAGTGTTTCAGCTATTTGCTAATTTTTAAGGGACATATGGTTTTCCAAATTTTCAGTACAAATCTGGGGGGGGGGGAGGGGCTTTGAAAAATCAGCGAAAAAGCTCAAAAACAAGGAGTTTCGCAAAATCTGTGATTGAAATGTTAATCTTGGTCTTTTTTACACCCTCCGAAATGTGATCGGAAACTTGACATCCGAACTCCAGACTCCGGAAAATGATCAAAATGACCCTGATAACTCTGTTTTTCAAACAAACATTTTGAAGACAGCGATTTAGAAATTTAAAAAATCAATTTTCCTAGCTCCCAAAAAATTCTTGAAATTTAAAGTACACTCTAAATAGACTGAACGATCATTAACCGTCGCTCCTCTAATCAATCATTATAATAATTGTATGTGTGCATTTTGATAACCACCACCAACCCATCCAACAATCAAGTTTTTTCGCCGCTGCTGCAAATATAGTTCAACAAAAGCAAAAAAAGGAACTACGTATTTCTTTGAGTGAAGAAAAATGATAATTGCACGTTGGTTGAAGCGGGAAGAAAGAGGGAAAAGGAATTATTCACGATGAGGTTGTGCAACCATTCAAAAGACGAGACAGGCTCCTTTTTCTCAAGATATTTAAAATGACGGAAAAGAAGAAGAAAAAGAAAGGAAAAAGGTCTCTGTCAACCTTTTTGGAGAGACAAAGGGCGGATAGGGGTCCCCAAAAAAAAAAGACCAAATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAAGTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGGGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATT</canonical>
            <polymorphic>GGAATCGCGAAAATCTTAAGAGCTACGGTCTGCATTTTTTCGTGATTGTGATTGCTGCAGAAACTACAGGTGGAAAATTAGTGATCAACAGTATGTACAGTACTATTCCTAGTGTTTCAGCTATTTGCTAATTTTTAAGGGACATATGGTTTTCCAAATTTTCAGTACAAATCTGGGGGGGGGGGAGGGGCTTTGAAAAATCAGCGAAAAAGCTCAAAAACAAGGAGTTTCGCAAAATCTGTGATTGAAATGTTAATCTTGGTCTTTTTTACACCCTCCGAAATGTGATCGGAAACTTGACATCCGAACTCCAGACTCCGGAAAATGATCAAAATGACCCTGATAACTCTGTTTTTCAAACAAACATTTTGAAGACAGCGATTTAGAAATTTAAAAAATCAATTTTCCTAGCTCCCAAAAAATTCTTGAAATTTAAAGTACACTCTAAATAGACTGAACGATCATTAACCGTCGCTCCTCTAATCAATCATTATAATAAWTGTATGTGTGCATTTTGATAACCACCACCAACCCATCCAACAATCAAGTTTTTTCGCCGCTGCTGCAAATATAGTTCAACAAAAGCAAAAAAAGGAACTACGTATTTCTTTGAGTGAAGAAAAATGATAATTGCACGTTGGTTGAAGCGGGAAGAAAGAGGGAAAAGGAATTATTCACGATGAGGTTGTGCAACCATTCAAAAGACGAGACAGGCTCCTTTTTCTCAAGATATTTAAAATGACGGAAAAGAAGAAGAAAAAGAAAGGAAAAAGGTCTCTGTCAACCTTTTTGGAGAGACAAAGGGCGGATAGGGGTCCCCAAAAAAAAAAGACCAAATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAAGTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGGGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>231 200 132 131 75 68 54 40 27 20 13 9</canonical_bands>
                <polymorphic_bands>231 200 199 132 75 54 40 27 20 13 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATAGACTGAACGATCATTAACC</pcr_primer_p1>
		<pcr_primer_p2>CTCATCGTGAATAATTCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AAATAGACTGAACGATCATTAACCGTCGCTCCTCTAATCAATCATTATAATAATTGTATGTGTGCATTTTGATAACCACCACCAACCCATCCAACAATCAAGTTTTTTCGCCGCTGCTGCAAATATAGTTCAACAAAAGCAAAAAAAGGAACTACGTATTTCTTTGAGTGAAGAAAAATGATAATTGCACGTTGGTTGAAGCGGGAAGAAAGAGGGAAAAGGAATTATTCACGATGAG</canonical_amplicon>
		<polymorphic_amplicon>AAATAGACTGAACGATCATTAACCGTCGCTCCTCTAATCAATCATTATAATAAWTGTATGTGTGCATTTTGATAACCACCACCAACCCATCCAACAATCAAGTTTTTTCGCCGCTGCTGCAAATATAGTTCAACAAAAGCAAAAAAAGGAACTACGTATTTCTTTGAGTGAAGAAAAATGATAATTGCACGTTGGTTGAAGCGGGAAGAAAGAGGGAAAAGGAATTATTCACGATGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2499</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>334465</contig_pos>
        <strand>+</strand>
        <context>AATCAAGTTT[C/T]TTCGCCGCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTATGTGTGCATTTTGATAACCACCACCAACCCATCCAACAATCAAGTTT</left_flank>
        <right_flank>TTCGCCGCTGCTGCAAATATAGTTCAACAAAAGCAAAAAAAGGAACTACG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTGCAGAAACTACAGGTGGAAAATTAGTGATCAACAGTATGTACAGTACTATTCCTAGTGTTTCAGCTATTTGCTAATTTTTAAGGGACATATGGTTTTCCAAATTTTCAGTACAAATCTGGGGGGGGGGGAGGGGCTTTGAAAAATCAGCGAAAAAGCTCAAAAACAAGGAGTTTCGCAAAATCTGTGATTGAAATGTTAATCTTGGTCTTTTTTACACCCTCCGAAATGTGATCGGAAACTTGACATCCGAACTCCAGACTCCGGAAAATGATCAAAATGACCCTGATAACTCTGTTTTTCAAACAAACATTTTGAAGACAGCGATTTAGAAATTTAAAAAATCAATTTTCCTAGCTCCCAAAAAATTCTTGAAATTTAAAGTACACTCTAAATAGACTGAACGATCATTAACCGTCGCTCCTCTAATCAATCATTATAATAATTGTATGTGTGCATTTTGATAACCACCACCAACCCATCCAACAATCAAGTTTTTTCGCCGCTGCTGCAAATATAGTTCAACAAAAGCAAAAAAAGGAACTACGTATTTCTTTGAGTGAAGAAAAATGATAATTGCACGTTGGTTGAAGCGGGAAGAAAGAGGGAAAAGGAATTATTCACGATGAGGTTGTGCAACCATTCAAAAGACGAGACAGGCTCCTTTTTCTCAAGATATTTAAAATGACGGAAAAGAAGAAGAAAAAGAAAGGAAAAAGGTCTCTGTCAACCTTTTTGGAGAGACAAAGGGCGGATAGGGGTCCCCAAAAAAAAAAGACCAAATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAAGTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGGGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATTAGGTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAA</canonical>
            <polymorphic>TGCTGCAGAAACTACAGGTGGAAAATTAGTGATCAACAGTATGTACAGTACTATTCCTAGTGTTTCAGCTATTTGCTAATTTTTAAGGGACATATGGTTTTCCAAATTTTCAGTACAAATCTGGGGGGGGGGGAGGGGCTTTGAAAAATCAGCGAAAAAGCTCAAAAACAAGGAGTTTCGCAAAATCTGTGATTGAAATGTTAATCTTGGTCTTTTTTACACCCTCCGAAATGTGATCGGAAACTTGACATCCGAACTCCAGACTCCGGAAAATGATCAAAATGACCCTGATAACTCTGTTTTTCAAACAAACATTTTGAAGACAGCGATTTAGAAATTTAAAAAATCAATTTTCCTAGCTCCCAAAAAATTCTTGAAATTTAAAGTACACTCTAAATAGACTGAACGATCATTAACCGTCGCTCCTCTAATCAATCATTATAATAATTGTATGTGTGCATTTTGATAACCACCACCAACCCATCCAACAATCAAGTTTYTTCGCCGCTGCTGCAAATATAGTTCAACAAAAGCAAAAAAAGGAACTACGTATTTCTTTGAGTGAAGAAAAATGATAATTGCACGTTGGTTGAAGCGGGAAGAAAGAGGGAAAAGGAATTATTCACGATGAGGTTGTGCAACCATTCAAAAGACGAGACAGGCTCCTTTTTCTCAAGATATTTAAAATGACGGAAAAGAAGAAGAAAAAGAAAGGAAAAAGGTCTCTGTCAACCTTTTTGGAGAGACAAAGGGCGGATAGGGGTCCCCAAAAAAAAAAGACCAAATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAAGTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGGGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATTAGGTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATAGACTGAACGATCATTAACC</pcr_primer_p1>
		<pcr_primer_p2>CTCATCGTGAATAATTCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AAATAGACTGAACGATCATTAACCGTCGCTCCTCTAATCAATCATTATAATAATTGTATGTGTGCATTTTGATAACCACCACCAACCCATCCAACAATCAAGTTTTTTCGCCGCTGCTGCAAATATAGTTCAACAAAAGCAAAAAAAGGAACTACGTATTTCTTTGAGTGAAGAAAAATGATAATTGCACGTTGGTTGAAGCGGGAAGAAAGAGGGAAAAGGAATTATTCACGATGAG</canonical_amplicon>
		<polymorphic_amplicon>AAATAGACTGAACGATCATTAACCGTCGCTCCTCTAATCAATCATTATAATAATTGTATGTGTGCATTTTGATAACCACCACCAACCCATCCAACAATCAAGTTTYTTCGCCGCTGCTGCAAATATAGTTCAACAAAAGCAAAAAAAGGAACTACGTATTTCTTTGAGTGAAGAAAAATGATAATTGCACGTTGGTTGAAGCGGGAAGAAAGAGGGAAAAGGAATTATTCACGATGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2500</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>334530</contig_pos>
        <strand>+</strand>
        <context>TCTTTGAGTG[A/G]AGAAAAATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATATAGTTCAACAAAAGCAAAAAAAGGAACTACGTATTTCTTTGAGTG</left_flank>
        <right_flank>AGAAAAATGATAATTGCACGTTGGTTGAAGCGGGAAGAAAGAGGGAAAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCTATTTGCTAATTTTTAAGGGACATATGGTTTTCCAAATTTTCAGTACAAATCTGGGGGGGGGGGAGGGGCTTTGAAAAATCAGCGAAAAAGCTCAAAAACAAGGAGTTTCGCAAAATCTGTGATTGAAATGTTAATCTTGGTCTTTTTTACACCCTCCGAAATGTGATCGGAAACTTGACATCCGAACTCCAGACTCCGGAAAATGATCAAAATGACCCTGATAACTCTGTTTTTCAAACAAACATTTTGAAGACAGCGATTTAGAAATTTAAAAAATCAATTTTCCTAGCTCCCAAAAAATTCTTGAAATTTAAAGTACACTCTAAATAGACTGAACGATCATTAACCGTCGCTCCTCTAATCAATCATTATAATAATTGTATGTGTGCATTTTGATAACCACCACCAACCCATCCAACAATCAAGTTTTTTCGCCGCTGCTGCAAATATAGTTCAACAAAAGCAAAAAAAGGAACTACGTATTTCTTTGAGTGAAGAAAAATGATAATTGCACGTTGGTTGAAGCGGGAAGAAAGAGGGAAAAGGAATTATTCACGATGAGGTTGTGCAACCATTCAAAAGACGAGACAGGCTCCTTTTTCTCAAGATATTTAAAATGACGGAAAAGAAGAAGAAAAAGAAAGGAAAAAGGTCTCTGTCAACCTTTTTGGAGAGACAAAGGGCGGATAGGGGTCCCCAAAAAAAAAAGACCAAATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAAGTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGGGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATTAGGTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAATTCTGATCAAAAAGAAATCATTAAGAAATCATCGAGATTAAGAAATCGTCGAGATAAGAGAGAAA</canonical>
            <polymorphic>CAGCTATTTGCTAATTTTTAAGGGACATATGGTTTTCCAAATTTTCAGTACAAATCTGGGGGGGGGGGAGGGGCTTTGAAAAATCAGCGAAAAAGCTCAAAAACAAGGAGTTTCGCAAAATCTGTGATTGAAATGTTAATCTTGGTCTTTTTTACACCCTCCGAAATGTGATCGGAAACTTGACATCCGAACTCCAGACTCCGGAAAATGATCAAAATGACCCTGATAACTCTGTTTTTCAAACAAACATTTTGAAGACAGCGATTTAGAAATTTAAAAAATCAATTTTCCTAGCTCCCAAAAAATTCTTGAAATTTAAAGTACACTCTAAATAGACTGAACGATCATTAACCGTCGCTCCTCTAATCAATCATTATAATAATTGTATGTGTGCATTTTGATAACCACCACCAACCCATCCAACAATCAAGTTTTTTCGCCGCTGCTGCAAATATAGTTCAACAAAAGCAAAAAAAGGAACTACGTATTTCTTTGAGTGRAGAAAAATGATAATTGCACGTTGGTTGAAGCGGGAAGAAAGAGGGAAAAGGAATTATTCACGATGAGGTTGTGCAACCATTCAAAAGACGAGACAGGCTCCTTTTTCTCAAGATATTTAAAATGACGGAAAAGAAGAAGAAAAAGAAAGGAAAAAGGTCTCTGTCAACCTTTTTGGAGAGACAAAGGGCGGATAGGGGTCCCCAAAAAAAAAAGACCAAATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAAGTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGGGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATTAGGTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAATTCTGATCAAAAAGAAATCATTAAGAAATCATCGAGATTAAGAAATCGTCGAGATAAGAGAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATAGACTGAACGATCATTAACC</pcr_primer_p1>
		<pcr_primer_p2>CTCATCGTGAATAATTCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AAATAGACTGAACGATCATTAACCGTCGCTCCTCTAATCAATCATTATAATAATTGTATGTGTGCATTTTGATAACCACCACCAACCCATCCAACAATCAAGTTTTTTCGCCGCTGCTGCAAATATAGTTCAACAAAAGCAAAAAAAGGAACTACGTATTTCTTTGAGTGAAGAAAAATGATAATTGCACGTTGGTTGAAGCGGGAAGAAAGAGGGAAAAGGAATTATTCACGATGAG</canonical_amplicon>
		<polymorphic_amplicon>AAATAGACTGAACGATCATTAACCGTCGCTCCTCTAATCAATCATTATAATAATTGTATGTGTGCATTTTGATAACCACCACCAACCCATCCAACAATCAAGTTTTTTCGCCGCTGCTGCAAATATAGTTCAACAAAAGCAAAAAAAGGAACTACGTATTTCTTTGAGTGRAGAAAAATGATAATTGCACGTTGGTTGAAGCGGGAAGAAAGAGGGAAAAGGAATTATTCACGATGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2501</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>334666</contig_pos>
        <strand></strand>
        <context>CGGAAAAGAA[G/A]AAGAAAAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGACGAGACAGGCTCCTTTTTCTCAAGATATTTAAAATGACGGAAAAGAA</left_flank>
        <right_flank>AAGAAAAAGAAAGGAAAAAGGTCTCTGTCAACCTTTTTGGAGAGACAAAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATCTTGGTCTTTTTTACACCCTCCGAAATGTGATCGGAAACTTGACATCCGAACTCCAGACTCCGGAAAATGATCAAAATGACCCTGATAACTCTGTTTTTCAAACAAACATTTTGAAGACAGCGATTTAGAAATTTAAAAAATCAATTTTCCTAGCTCCCAAAAAATTCTTGAAATTTAAAGTACACTCTAAATAGACTGAACGATCATTAACCGTCGCTCCTCTAATCAATCATTATAATAATTGTATGTGTGCATTTTGATAACCACCACCAACCCATCCAACAATCAAGTTTTTTCGCCGCTGCTGCAAATATAGTTCAACAAAAGCAAAAAAAGGAACTACGTATTTCTTTGAGTGAAGAAAAATGATAATTGCACGTTGGTTGAAGCGGGAAGAAAGAGGGAAAAGGAATTATTCACGATGAGGTTGTGCAACCATTCAAAAGACGAGACAGGCTCCTTTTTCTCAAGATATTTAAAATGACGGAAAAGAAGAAGAAAAAGAAAGGAAAAAGGTCTCTGTCAACCTTTTTGGAGAGACAAAGGGCGGATAGGGGTCCCCAAAAAAAAAAGACCAAATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAAGTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGGGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATTAGGTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAATTCTGATCAAAAAGAAATCATTAAGAAATCATCGAGATTAAGAAATCGTCGAGATAAGAGAGAAAAAAACGAGTCTAATTATGAAGATGAAAAGAAATTGAAAAAAAATGAGAGAAAGAAGAAAAAGTGCATGAGTATGCTTACTTTTTGAACAGATAGGAAGAGCAACTGTCGTTTGGGTACATTTTTGAGTGCAAAACA</canonical>
            <polymorphic>TAATCTTGGTCTTTTTTACACCCTCCGAAATGTGATCGGAAACTTGACATCCGAACTCCAGACTCCGGAAAATGATCAAAATGACCCTGATAACTCTGTTTTTCAAACAAACATTTTGAAGACAGCGATTTAGAAATTTAAAAAATCAATTTTCCTAGCTCCCAAAAAATTCTTGAAATTTAAAGTACACTCTAAATAGACTGAACGATCATTAACCGTCGCTCCTCTAATCAATCATTATAATAATTGTATGTGTGCATTTTGATAACCACCACCAACCCATCCAACAATCAAGTTTTTTCGCCGCTGCTGCAAATATAGTTCAACAAAAGCAAAAAAAGGAACTACGTATTTCTTTGAGTGAAGAAAAATGATAATTGCACGTTGGTTGAAGCGGGAAGAAAGAGGGAAAAGGAATTATTCACGATGAGGTTGTGCAACCATTCAAAAGACGAGACAGGCTCCTTTTTCTCAAGATATTTAAAATGACGGAAAAGAARAAGAAAAAGAAAGGAAAAAGGTCTCTGTCAACCTTTTTGGAGAGACAAAGGGCGGATAGGGGTCCCCAAAAAAAAAAGACCAAATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAAGTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGGGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATTAGGTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAATTCTGATCAAAAAGAAATCATTAAGAAATCATCGAGATTAAGAAATCGTCGAGATAAGAGAGAAAAAAACGAGTCTAATTATGAAGATGAAAAGAAATTGAAAAAAAATGAGAGAAAGAAGAAAAAGTGCATGAGTATGCTTACTTTTTGAACAGATAGGAAGAGCAACTGTCGTTTGGGTACATTTTTGAGTGCAAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCATTCAAAAGACGAGACA</pcr_primer_p1>
		<pcr_primer_p2>TTGTCCGATTGGTCATATCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACCATTCAAAAGACGAGACAGGCTCCTTTTTCTCAAGATATTTAAAATGACGGAAAAGAAGAAGAAAAAGAAAGGAAAAAGGTCTCTGTCAACCTTTTTGGAGAGACAAAGGGCGGATAGGGGTCCCCAAAAAAAAAAGACCAAATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAAGTACTAGGTCACCAGATATGACCAATCGGACAA</canonical_amplicon>
		<polymorphic_amplicon>ACCATTCAAAAGACGAGACAGGCTCCTTTTTCTCAAGATATTTAAAATGACGGAAAAGAARAAGAAAAAGAAAGGAAAAAGGTCTCTGTCAACCTTTTTGGAGAGACAAAGGGCGGATAGGGGTCCCCAAAAAAAAAAGACCAAATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAAGTACTAGGTCACCAGATATGACCAATCGGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2502</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>334820</contig_pos>
        <strand>+</strand>
        <context>GCAAAAGAAA[A/T]WGTRCTAGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAA</left_flank>
        <right_flank>AGTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGCTCCCAAAAAATTCTTGAAATTTAAAGTACACTCTAAATAGACTGAACGATCATTAACCGTCGCTCCTCTAATCAATCATTATAATAATTGTATGTGTGCATTTTGATAACCACCACCAACCCATCCAACAATCAAGTTTTTTCGCCGCTGCTGCAAATATAGTTCAACAAAAGCAAAAAAAGGAACTACGTATTTCTTTGAGTGAAGAAAAATGATAATTGCACGTTGGTTGAAGCGGGAAGAAAGAGGGAAAAGGAATTATTCACGATGAGGTTGTGCAACCATTCAAAAGACGAGACAGGCTCCTTTTTCTCAAGATATTTAAAATGACGGAAAAGAAGAAGAAAAAGAAAGGAAAAAGGTCTCTGTCAACCTTTTTGGAGAGACAAAGGGCGGATAGGGGTCCCCAAAAAAAAAAGACCAAATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAAGTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGGGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATTAGGTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAATTCTGATCAAAAAGAAATCATTAAGAAATCATCGAGATTAAGAAATCGTCGAGATAAGAGAGAAAAAAACGAGTCTAATTATGAAGATGAAAAGAAATTGAAAAAAAATGAGAGAAAGAAGAAAAAGTGCATGAGTATGCTTACTTTTTGAACAGATAGGAAGAGCAACTGTCGTTTGGGTACATTTTTGAGTGCAAAACAGAGGGAGAAAAGAAAAATGACTAGACTTAAAAAATGGGGAGGAAGGTATCAATCATAGCAGTTAAGGAAATCTAGAGAGAGAATTTTTCTGAGTCTGAATACAAATTGGGCAGGATTATGTTCATTTTAAAACACTTTGAATCCGAAAAAATAC</canonical>
            <polymorphic>CTAGCTCCCAAAAAATTCTTGAAATTTAAAGTACACTCTAAATAGACTGAACGATCATTAACCGTCGCTCCTCTAATCAATCATTATAATAATTGTATGTGTGCATTTTGATAACCACCACCAACCCATCCAACAATCAAGTTTTTTCGCCGCTGCTGCAAATATAGTTCAACAAAAGCAAAAAAAGGAACTACGTATTTCTTTGAGTGAAGAAAAATGATAATTGCACGTTGGTTGAAGCGGGAAGAAAGAGGGAAAAGGAATTATTCACGATGAGGTTGTGCAACCATTCAAAAGACGAGACAGGCTCCTTTTTCTCAAGATATTTAAAATGACGGAAAAGAAGAAGAAAAAGAAAGGAAAAAGGTCTCTGTCAACCTTTTTGGAGAGACAAAGGGCGGATAGGGGTCCCCAAAAAAAAAAGACCAAATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAWAGTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGGGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATTAGGTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAATTCTGATCAAAAAGAAATCATTAAGAAATCATCGAGATTAAGAAATCGTCGAGATAAGAGAGAAAAAAACGAGTCTAATTATGAAGATGAAAAGAAATTGAAAAAAAATGAGAGAAAGAAGAAAAAGTGCATGAGTATGCTTACTTTTTGAACAGATAGGAAGAGCAACTGTCGTTTGGGTACATTTTTGAGTGCAAAACAGAGGGAGAAAAGAAAAATGACTAGACTTAAAAAATGGGGAGGAAGGTATCAATCATAGCAGTTAAGGAAATCTAGAGAGAGAATTTTTCTGAGTCTGAATACAAATTGGGCAGGATTATGTTCATTTTAAAACACTTTGAATCCGAAAAAATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTGACAGAGACGAAAGTAGAG</pcr_primer_p1>
		<pcr_primer_p2>TCGATGATTTCTTAATGATTTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAAGTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGGGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATTAGGTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAATTCTGATCAAAAAGAAATCATTAAGAAATCATCGA</canonical_amplicon>
		<polymorphic_amplicon>ATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAWAGTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGGGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATTAGGTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAATTCTGATCAAAAAGAAATCATTAAGAAATCATCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2503</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>334821</contig_pos>
        <strand>+</strand>
        <context>CAAAAGAAAW[A/T]GTRCTAGGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAA</left_flank>
        <right_flank>GTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGGG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGCTCCCAAAAAATTCTTGAAATTTAAAGTACACTCTAAATAGACTGAACGATCATTAACCGTCGCTCCTCTAATCAATCATTATAATAATTGTATGTGTGCATTTTGATAACCACCACCAACCCATCCAACAATCAAGTTTTTTCGCCGCTGCTGCAAATATAGTTCAACAAAAGCAAAAAAAGGAACTACGTATTTCTTTGAGTGAAGAAAAATGATAATTGCACGTTGGTTGAAGCGGGAAGAAAGAGGGAAAAGGAATTATTCACGATGAGGTTGTGCAACCATTCAAAAGACGAGACAGGCTCCTTTTTCTCAAGATATTTAAAATGACGGAAAAGAAGAAGAAAAAGAAAGGAAAAAGGTCTCTGTCAACCTTTTTGGAGAGACAAAGGGCGGATAGGGGTCCCCAAAAAAAAAAGACCAAATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAAGTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGGGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATTAGGTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAATTCTGATCAAAAAGAAATCATTAAGAAATCATCGAGATTAAGAAATCGTCGAGATAAGAGAGAAAAAAACGAGTCTAATTATGAAGATGAAAAGAAATTGAAAAAAAATGAGAGAAAGAAGAAAAAGTGCATGAGTATGCTTACTTTTTGAACAGATAGGAAGAGCAACTGTCGTTTGGGTACATTTTTGAGTGCAAAACAGAGGGAGAAAAGAAAAATGACTAGACTTAAAAAATGGGGAGGAAGGTATCAATCATAGCAGTTAAGGAAATCTAGAGAGAGAATTTTTCTGAGTCTGAATACAAATTGGGCAGGATTATGTTCATTTTAAAACACTTTGAATCCGAAAAAATACC</canonical>
            <polymorphic>TAGCTCCCAAAAAATTCTTGAAATTTAAAGTACACTCTAAATAGACTGAACGATCATTAACCGTCGCTCCTCTAATCAATCATTATAATAATTGTATGTGTGCATTTTGATAACCACCACCAACCCATCCAACAATCAAGTTTTTTCGCCGCTGCTGCAAATATAGTTCAACAAAAGCAAAAAAAGGAACTACGTATTTCTTTGAGTGAAGAAAAATGATAATTGCACGTTGGTTGAAGCGGGAAGAAAGAGGGAAAAGGAATTATTCACGATGAGGTTGTGCAACCATTCAAAAGACGAGACAGGCTCCTTTTTCTCAAGATATTTAAAATGACGGAAAAGAAGAAGAAAAAGAAAGGAAAAAGGTCTCTGTCAACCTTTTTGGAGAGACAAAGGGCGGATAGGGGTCCCCAAAAAAAAAAGACCAAATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAWGTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGGGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATTAGGTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAATTCTGATCAAAAAGAAATCATTAAGAAATCATCGAGATTAAGAAATCGTCGAGATAAGAGAGAAAAAAACGAGTCTAATTATGAAGATGAAAAGAAATTGAAAAAAAATGAGAGAAAGAAGAAAAAGTGCATGAGTATGCTTACTTTTTGAACAGATAGGAAGAGCAACTGTCGTTTGGGTACATTTTTGAGTGCAAAACAGAGGGAGAAAAGAAAAATGACTAGACTTAAAAAATGGGGAGGAAGGTATCAATCATAGCAGTTAAGGAAATCTAGAGAGAGAATTTTTCTGAGTCTGAATACAAATTGGGCAGGATTATGTTCATTTTAAAACACTTTGAATCCGAAAAAATACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGTACT</site>
                <isoschizomers>
                    <enzyme>Acc113I</enzyme>
                    <enzyme>ScaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 471 29</canonical_bands>
                <polymorphic_bands>971 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTGACAGAGACGAAAGTAGAG</pcr_primer_p1>
		<pcr_primer_p2>TCGATGATTTCTTAATGATTTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAAGTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGGGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATTAGGTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAATTCTGATCAAAAAGAAATCATTAAGAAATCATCGA</canonical_amplicon>
		<polymorphic_amplicon>ATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAWGTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGGGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATTAGGTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAATTCTGATCAAAAAGAAATCATTAAGAAATCATCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2504</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>334824</contig_pos>
        <strand>+</strand>
        <context>AAGAAAWWGT[A/G]CTAGGTCACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAAGT</left_flank>
        <right_flank>CTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGGGAGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCCAAAAAATTCTTGAAATTTAAAGTACACTCTAAATAGACTGAACGATCATTAACCGTCGCTCCTCTAATCAATCATTATAATAATTGTATGTGTGCATTTTGATAACCACCACCAACCCATCCAACAATCAAGTTTTTTCGCCGCTGCTGCAAATATAGTTCAACAAAAGCAAAAAAAGGAACTACGTATTTCTTTGAGTGAAGAAAAATGATAATTGCACGTTGGTTGAAGCGGGAAGAAAGAGGGAAAAGGAATTATTCACGATGAGGTTGTGCAACCATTCAAAAGACGAGACAGGCTCCTTTTTCTCAAGATATTTAAAATGACGGAAAAGAAGAAGAAAAAGAAAGGAAAAAGGTCTCTGTCAACCTTTTTGGAGAGACAAAGGGCGGATAGGGGTCCCCAAAAAAAAAAGACCAAATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAAGTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGGGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATTAGGTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAATTCTGATCAAAAAGAAATCATTAAGAAATCATCGAGATTAAGAAATCGTCGAGATAAGAGAGAAAAAAACGAGTCTAATTATGAAGATGAAAAGAAATTGAAAAAAAATGAGAGAAAGAAGAAAAAGTGCATGAGTATGCTTACTTTTTGAACAGATAGGAAGAGCAACTGTCGTTTGGGTACATTTTTGAGTGCAAAACAGAGGGAGAAAAGAAAAATGACTAGACTTAAAAAATGGGGAGGAAGGTATCAATCATAGCAGTTAAGGAAATCTAGAGAGAGAATTTTTCTGAGTCTGAATACAAATTGGGCAGGATTATGTTCATTTTAAAACACTTTGAATCCGAAAAAATACCGGA</canonical>
            <polymorphic>CTCCCAAAAAATTCTTGAAATTTAAAGTACACTCTAAATAGACTGAACGATCATTAACCGTCGCTCCTCTAATCAATCATTATAATAATTGTATGTGTGCATTTTGATAACCACCACCAACCCATCCAACAATCAAGTTTTTTCGCCGCTGCTGCAAATATAGTTCAACAAAAGCAAAAAAAGGAACTACGTATTTCTTTGAGTGAAGAAAAATGATAATTGCACGTTGGTTGAAGCGGGAAGAAAGAGGGAAAAGGAATTATTCACGATGAGGTTGTGCAACCATTCAAAAGACGAGACAGGCTCCTTTTTCTCAAGATATTTAAAATGACGGAAAAGAAGAAGAAAAAGAAAGGAAAAAGGTCTCTGTCAACCTTTTTGGAGAGACAAAGGGCGGATAGGGGTCCCCAAAAAAAAAAGACCAAATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAAGTRCTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGGGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATTAGGTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAATTCTGATCAAAAAGAAATCATTAAGAAATCATCGAGATTAAGAAATCGTCGAGATAAGAGAGAAAAAAACGAGTCTAATTATGAAGATGAAAAGAAATTGAAAAAAAATGAGAGAAAGAAGAAAAAGTGCATGAGTATGCTTACTTTTTGAACAGATAGGAAGAGCAACTGTCGTTTGGGTACATTTTTGAGTGCAAAACAGAGGGAGAAAAGAAAAATGACTAGACTTAAAAAATGGGGAGGAAGGTATCAATCATAGCAGTTAAGGAAATCTAGAGAGAGAATTTTTCTGAGTCTGAATACAAATTGGGCAGGATTATGTTCATTTTAAAACACTTTGAATCCGAAAAAATACCGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGTACT</site>
                <isoschizomers>
                    <enzyme>Acc113I</enzyme>
                    <enzyme>ScaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>471 185 178 138 28</canonical_bands>
                <polymorphic_bands>609 185 178 28</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>503 471 26</canonical_bands>
                <polymorphic_bands>974 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTGACAGAGACGAAAGTAGAG</pcr_primer_p1>
		<pcr_primer_p2>TCGATGATTTCTTAATGATTTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAAGTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGGGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATTAGGTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAATTCTGATCAAAAAGAAATCATTAAGAAATCATCGA</canonical_amplicon>
		<polymorphic_amplicon>ATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAAGTRCTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGGGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATTAGGTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAATTCTGATCAAAAAGAAATCATTAAGAAATCATCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2505</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>341292</contig_pos>
        <strand>+</strand>
        <context>AATTTTTCAA[A/G]AAGCCCCGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTACACGGTGTGATAGAGCAACCATTGGTCTAATTATAGAATTTTTCAA</left_flank>
        <right_flank>AAGCCCCGGGTATAAAATGTAGGGGCGAGAGTTCAAAAAATTTAGTTTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCCTGATTTACTACCGTTAATTGGGAAAGAGAAAACTGGAAGTTGAGTGCAATTTGGTTTGTGCCACGATTGATGATACAAGACGGTTGCGCGTGTCTTTAAAAGATAGTAAAAATGTCATATAAGGCAAACAACTGTTTTTACAATGATATATAACTTTACTCCTGTCAAACACTTTCACTCCAAAAATCAAAACTAACATCTAGTCGAAGCACTCAGTATCAGAAAGAATATTTTTCCGCCACTGAACAGTATTCAGCCTATACTGTTTTTCTCGACCACGTGTTACAGCAGCAATAGCAATTTTCGCATGATTTTTTGCTCTCTACTCTTTTTTATTAAAACGACACACTAAAAATGAAGTGTGTTATCAGGTCGTTAACAGCCACTGTGCACCCGATAACTGTTAAGCTTACATTTTCATCGCATTAGTTTCACAATTTGCGACGTACACGGTGTGATAGAGCAACCATTGGTCTAATTATAGAATTTTTCAAAAAGCCCCGGGTATAAAATGTAGGGGCGAGAGTTCAAAAAATTTAGTTTTTTTTTAGTTTTATGGTTGATAACAATAATATTATCGAACGAACGTTCTCACCCATTACATGCAGCTAGGAATGTTTGGATTGGCCTTTGTGGAATTTCGAAATGTTTCATTTTTAAAGTTTTGGACATCGCAAATTTCGGGATCCCACTTTCGCTATCCAAATCCAATTTCATCATGAAAATGGTAGTGTTTGCTGTCGTGCTTCTGGGATTAGAAGGAATTGCTGTTTTTGAGTTGATCCCGCAAGGAACAACAATCACAGCTTTCACCTACAGGTTATAGTTGGGTTCCCTCGCCCTCGTCCTTCGATAGAAATGCCCGGGACGCACCACCATTCACCTTCCGCGCGATATTTCTCACCCACTTGTGACTAAGAAGACTCAGGCCAAACTGCAGAATCTGGGCTGGACTACGGTTTATTATCTGTAATACTAGCCAGACATTACGCTTT</canonical>
            <polymorphic>CTTCCTGATTTACTACCGTTAATTGGGAAAGAGAAAACTGGAAGTTGAGTGCAATTTGGTTTGTGCCACGATTGATGATACAAGACGGTTGCGCGTGTCTTTAAAAGATAGTAAAAATGTCATATAAGGCAAACAACTGTTTTTACAATGATATATAACTTTACTCCTGTCAAACACTTTCACTCCAAAAATCAAAACTAACATCTAGTCGAAGCACTCAGTATCAGAAAGAATATTTTTCCGCCACTGAACAGTATTCAGCCTATACTGTTTTTCTCGACCACGTGTTACAGCAGCAATAGCAATTTTCGCATGATTTTTTGCTCTCTACTCTTTTTTATTAAAACGACACACTAAAAATGAAGTGTGTTATCAGGTCGTTAACAGCCACTGTGCACCCGATAACTGTTAAGCTTACATTTTCATCGCATTAGTTTCACAATTTGCGACGTACACGGTGTGATAGAGCAACCATTGGTCTAATTATAGAATTTTTCAARAAGCCCCGGGTATAAAATGTAGGGGCGAGAGTTCAAAAAATTTAGTTTTTTTTTAGTTTTATGGTTGATAACAATAATATTATCGAACGAACGTTCTCACCCATTACATGCAGCTAGGAATGTTTGGATTGGCCTTTGTGGAATTTCGAAATGTTTCATTTTTAAAGTTTTGGACATCGCAAATTTCGGGATCCCACTTTCGCTATCCAAATCCAATTTCATCATGAAAATGGTAGTGTTTGCTGTCGTGCTTCTGGGATTAGAAGGAATTGCTGTTTTTGAGTTGATCCCGCAAGGAACAACAATCACAGCTTTCACCTACAGGTTATAGTTGGGTTCCCTCGCCCTCGTCCTTCGATAGAAATGCCCGGGACGCACCACCATTCACCTTCCGCGCGATATTTCTCACCCACTTGTGACTAAGAAGACTCAGGCCAAACTGCAGAATCTGGGCTGGACTACGGTTTATTATCTGTAATACTAGCCAGACATTACGCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATCGCATTAGTTTCACAAT</pcr_primer_p1>
		<pcr_primer_p2>CCAAAACTTTAAAAATGAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCATCGCATTAGTTTCACAATTTGCGACGTACACGGTGTGATAGAGCAACCATTGGTCTAATTATAGAATTTTTCAAAAAGCCCCGGGTATAAAATGTAGGGGCGAGAGTTCAAAAAATTTAGTTTTTTTTTAGTTTTATGGTTGATAACAATAATATTATCGAACGAACGTTCTCACCCATTACATGCAGCTAGGAATGTTTGGATTGGCCTTTGTGGAATTTCGAAATGTTTCATTTTTAAAGTTTTGG</canonical_amplicon>
		<polymorphic_amplicon>TCATCGCATTAGTTTCACAATTTGCGACGTACACGGTGTGATAGAGCAACCATTGGTCTAATTATAGAATTTTTCAARAAGCCCCGGGTATAAAATGTAGGGGCGAGAGTTCAAAAAATTTAGTTTTTTTTTAGTTTTATGGTTGATAACAATAATATTATCGAACGAACGTTCTCACCCATTACATGCAGCTAGGAATGTTTGGATTGGCCTTTGTGGAATTTCGAAATGTTTCATTTTTAAAGTTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2506</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>340911</contig_pos>
        <strand>+</strand>
        <context>TMGTAAAAAT[G/T]TCATATAAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGATTGATGATACAAGACGGTTGCGCGTGTCTTTAAAAGATAGTAAAAAT</left_flank>
        <right_flank>TCATATAAGGCAAACAACTGTTTTTACAATGATATATAACTTTACTCCTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAGTGTGAGCATGATTTGAGAGTTTCTAAATCTGAACTTACAGTCAAATGATTTTTAATTATCCTACTCCTCGTCTGGATTTCCGATTCTTCTGGAAAATTGTGACTACAGTAACCACCATACTTCTATAAACTCACTGATATCGACATCCATTTTTCCTTCTTTAAAAGTGGGCCGCAAACTAATCAGTAGAAAATAGAAGTCACCGGTTTTCCGAACCCGACTTGAACGCAAAACTGGGGCTGTTGATGGAGAGGAATGATAGGCCGACCATCATATTGTTTTACTGCCATCATTTACGGCTCTTTCGCCTATTTCTCTGGGCACTCCCACCCGGAGGGGCTCTCTTATCATACGGAATTCCGTAAAATCAACTTTCCTTCCTGATTTACTACCGTTAATTGGGAAAGAGAAAACTGGAAGTTGAGTGCAATTTGGTTTGTGCCACGATTGATGATACAAGACGGTTGCGCGTGTCTTTAAAAGATAGTAAAAATGTCATATAAGGCAAACAACTGTTTTTACAATGATATATAACTTTACTCCTGTCAAACACTTTCACTCCAAAAATCAAAACTAACATCTAGTCGAAGCACTCAGTATCAGAAAGAATATTTTTCCGCCACTGAACAGTATTCAGCCTATACTGTTTTTCTCGACCACGTGTTACAGCAGCAATAGCAATTTTCGCATGATTTTTTGCTCTCTACTCTTTTTTATTAAAACGACACACTAAAAATGAAGTGTGTTATCAGGTCGTTAACAGCCACTGTGCACCCGATAACTGTTAAGCTTACATTTTCATCGCATTAGTTTCACAATTTGCGACGTACACGGTGTGATAGAGCAACCATTGGTCTAATTATAGAATTTTTCAAAAAGCCCCGGGTATAAAATGTAGGGGCGAGAGTTCAAAAAATTTAGTTTTTTTTTAGTTTTATGGTTGATAACAATAATATTATCGAACGAACGTTCTCACCCATTACATGCAGCTAGGA</canonical>
            <polymorphic>ATGAGTGTGAGCATGATTTGAGAGTTTCTAAATCTGAACTTACAGTCAAATGATTTTTAATTATCCTACTCCTCGTCTGGATTTCCGATTCTTCTGGAAAATTGTGACTACAGTAACCACCATACTTCTATAAACTCACTGATATCGACATCCATTTTTCCTTCTTTAAAAGTGGGCCGCAAACTAATCAGTAGAAAATAGAAGTCACCGGTTTTCCGAACCCGACTTGAACGCAAAACTGGGGCTGTTGATGGAGAGGAATGATAGGCCGACCATCATATTGTTTTACTGCCATCATTTACGGCTCTTTCGCCTATTTCTCTGGGCACTCCCACCCGGAGGGGCTCTCTTATCATACGGAATTCCGTAAAATCAACTTTCCTTCCTGATTTACTACCGTTAATTGGGAAAGAGAAAACTGGAAGTTGAGTGCAATTTGGTTTGTGCCACGATTGATGATACAAGACGGTTGCGCGTGTCTTTAAAAGATAGTAAAAATKTCATATAAGGCAAACAACTGTTTTTACAATGATATATAACTTTACTCCTGTCAAACACTTTCACTCCAAAAATCAAAACTAACATCTAGTCGAAGCACTCAGTATCAGAAAGAATATTTTTCCGCCACTGAACAGTATTCAGCCTATACTGTTTTTCTCGACCACGTGTTACAGCAGCAATAGCAATTTTCGCATGATTTTTTGCTCTCTACTCTTTTTTATTAAAACGACACACTAAAAATGAAGTGTGTTATCAGGTCGTTAACAGCCACTGTGCACCCGATAACTGTTAAGCTTACATTTTCATCGCATTAGTTTCACAATTTGCGACGTACACGGTGTGATAGAGCAACCATTGGTCTAATTATAGAATTTTTCAAAAAGCCCCGGGTATAAAATGTAGGGGCGAGAGTTCAAAAAATTTAGTTTTTTTTTAGTTTTATGGTTGATAACAATAATATTATCGAACGAACGTTCTCACCCATTACATGCAGCTAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTCCGTAAAATCAACTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATACTGAGTGCTTCGACTAGATG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAATTCCGTAAAATCAACTTTCCTTCCTGATTTACTACCGTTAATTGGGAAAGAGAAAACTGGAAGTTGAGTGCAATTTGGTTTGTGCCACGATTGATGATACAAGACGGTTGCGCGTGTCTTTAAAAGATAGTAAAAATGTCATATAAGGCAAACAACTGTTTTTACAATGATATATAACTTTACTCCTGTCAAACACTTTCACTCCAAAAATCAAAACTAACATCTAGTCGAAGCACTCAGTAT</canonical_amplicon>
		<polymorphic_amplicon>GAATTCCGTAAAATCAACTTTCCTTCCTGATTTACTACCGTTAATTGGGAAAGAGAAAACTGGAAGTTGAGTGCAATTTGGTTTGTGCCACGATTGATGATACAAGACGGTTGCGCGTGTCTTTAAAAGATAGTAAAAATKTCATATAAGGCAAACAACTGTTTTTACAATGATATATAACTTTACTCCTGTCAAACACTTTCACTCCAAAAATCAAAACTAACATCTAGTCGAAGCACTCAGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2507</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>340902</contig_pos>
        <strand>+</strand>
        <context>TTTAAAAGAT[A/C]GTAAAAATKT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTGTGCCACGATTGATGATACAAGACGGTTGCGCGTGTCTTTAAAAGAT</left_flank>
        <right_flank>GTAAAAATGTCATATAAGGCAAACAACTGTTTTTACAATGATATATAACT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAAAAAATGAGTGTGAGCATGATTTGAGAGTTTCTAAATCTGAACTTACAGTCAAATGATTTTTAATTATCCTACTCCTCGTCTGGATTTCCGATTCTTCTGGAAAATTGTGACTACAGTAACCACCATACTTCTATAAACTCACTGATATCGACATCCATTTTTCCTTCTTTAAAAGTGGGCCGCAAACTAATCAGTAGAAAATAGAAGTCACCGGTTTTCCGAACCCGACTTGAACGCAAAACTGGGGCTGTTGATGGAGAGGAATGATAGGCCGACCATCATATTGTTTTACTGCCATCATTTACGGCTCTTTCGCCTATTTCTCTGGGCACTCCCACCCGGAGGGGCTCTCTTATCATACGGAATTCCGTAAAATCAACTTTCCTTCCTGATTTACTACCGTTAATTGGGAAAGAGAAAACTGGAAGTTGAGTGCAATTTGGTTTGTGCCACGATTGATGATACAAGACGGTTGCGCGTGTCTTTAAAAGATAGTAAAAATGTCATATAAGGCAAACAACTGTTTTTACAATGATATATAACTTTACTCCTGTCAAACACTTTCACTCCAAAAATCAAAACTAACATCTAGTCGAAGCACTCAGTATCAGAAAGAATATTTTTCCGCCACTGAACAGTATTCAGCCTATACTGTTTTTCTCGACCACGTGTTACAGCAGCAATAGCAATTTTCGCATGATTTTTTGCTCTCTACTCTTTTTTATTAAAACGACACACTAAAAATGAAGTGTGTTATCAGGTCGTTAACAGCCACTGTGCACCCGATAACTGTTAAGCTTACATTTTCATCGCATTAGTTTCACAATTTGCGACGTACACGGTGTGATAGAGCAACCATTGGTCTAATTATAGAATTTTTCAAAAAGCCCCGGGTATAAAATGTAGGGGCGAGAGTTCAAAAAATTTAGTTTTTTTTTAGTTTTATGGTTGATAACAATAATATTATCGAACGAACGTTCTCACCCATTACATG</canonical>
            <polymorphic>CAAAAAAAAATGAGTGTGAGCATGATTTGAGAGTTTCTAAATCTGAACTTACAGTCAAATGATTTTTAATTATCCTACTCCTCGTCTGGATTTCCGATTCTTCTGGAAAATTGTGACTACAGTAACCACCATACTTCTATAAACTCACTGATATCGACATCCATTTTTCCTTCTTTAAAAGTGGGCCGCAAACTAATCAGTAGAAAATAGAAGTCACCGGTTTTCCGAACCCGACTTGAACGCAAAACTGGGGCTGTTGATGGAGAGGAATGATAGGCCGACCATCATATTGTTTTACTGCCATCATTTACGGCTCTTTCGCCTATTTCTCTGGGCACTCCCACCCGGAGGGGCTCTCTTATCATACGGAATTCCGTAAAATCAACTTTCCTTCCTGATTTACTACCGTTAATTGGGAAAGAGAAAACTGGAAGTTGAGTGCAATTTGGTTTGTGCCACGATTGATGATACAAGACGGTTGCGCGTGTCTTTAAAAGATMGTAAAAATGTCATATAAGGCAAACAACTGTTTTTACAATGATATATAACTTTACTCCTGTCAAACACTTTCACTCCAAAAATCAAAACTAACATCTAGTCGAAGCACTCAGTATCAGAAAGAATATTTTTCCGCCACTGAACAGTATTCAGCCTATACTGTTTTTCTCGACCACGTGTTACAGCAGCAATAGCAATTTTCGCATGATTTTTTGCTCTCTACTCTTTTTTATTAAAACGACACACTAAAAATGAAGTGTGTTATCAGGTCGTTAACAGCCACTGTGCACCCGATAACTGTTAAGCTTACATTTTCATCGCATTAGTTTCACAATTTGCGACGTACACGGTGTGATAGAGCAACCATTGGTCTAATTATAGAATTTTTCAAAAAGCCCCGGGTATAAAATGTAGGGGCGAGAGTTCAAAAAATTTAGTTTTTTTTTAGTTTTATGGTTGATAACAATAATATTATCGAACGAACGTTCTCACCCATTACATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTCCGTAAAATCAACTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATACTGAGTGCTTCGACTAGATG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAATTCCGTAAAATCAACTTTCCTTCCTGATTTACTACCGTTAATTGGGAAAGAGAAAACTGGAAGTTGAGTGCAATTTGGTTTGTGCCACGATTGATGATACAAGACGGTTGCGCGTGTCTTTAAAAGATAGTAAAAATGTCATATAAGGCAAACAACTGTTTTTACAATGATATATAACTTTACTCCTGTCAAACACTTTCACTCCAAAAATCAAAACTAACATCTAGTCGAAGCACTCAGTAT</canonical_amplicon>
		<polymorphic_amplicon>GAATTCCGTAAAATCAACTTTCCTTCCTGATTTACTACCGTTAATTGGGAAAGAGAAAACTGGAAGTTGAGTGCAATTTGGTTTGTGCCACGATTGATGATACAAGACGGTTGCGCGTGTCTTTAAAAGATMGTAAAAATGTCATATAAGGCAAACAACTGTTTTTACAATGATATATAACTTTACTCCTGTCAAACACTTTCACTCCAAAAATCAAAACTAACATCTAGTCGAAGCACTCAGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2508</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>340872</contig_pos>
        <strand>+</strand>
        <context>GATTGATGAT[A/G]CAAGACGGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAGAAAACTGGAAGTTGAGTGCAATTTGGTTTGTGCCACGATTGATGAT</left_flank>
        <right_flank>CAAGACGGTTGCGCGTGTCTTTAAAAGATAGTAAAAATGTCATATAAGGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATGCAATTGTTCCTTTCCTGAAAAAATACAAAAAAAAATGAGTGTGAGCATGATTTGAGAGTTTCTAAATCTGAACTTACAGTCAAATGATTTTTAATTATCCTACTCCTCGTCTGGATTTCCGATTCTTCTGGAAAATTGTGACTACAGTAACCACCATACTTCTATAAACTCACTGATATCGACATCCATTTTTCCTTCTTTAAAAGTGGGCCGCAAACTAATCAGTAGAAAATAGAAGTCACCGGTTTTCCGAACCCGACTTGAACGCAAAACTGGGGCTGTTGATGGAGAGGAATGATAGGCCGACCATCATATTGTTTTACTGCCATCATTTACGGCTCTTTCGCCTATTTCTCTGGGCACTCCCACCCGGAGGGGCTCTCTTATCATACGGAATTCCGTAAAATCAACTTTCCTTCCTGATTTACTACCGTTAATTGGGAAAGAGAAAACTGGAAGTTGAGTGCAATTTGGTTTGTGCCACGATTGATGATACAAGACGGTTGCGCGTGTCTTTAAAAGATAGTAAAAATGTCATATAAGGCAAACAACTGTTTTTACAATGATATATAACTTTACTCCTGTCAAACACTTTCACTCCAAAAATCAAAACTAACATCTAGTCGAAGCACTCAGTATCAGAAAGAATATTTTTCCGCCACTGAACAGTATTCAGCCTATACTGTTTTTCTCGACCACGTGTTACAGCAGCAATAGCAATTTTCGCATGATTTTTTGCTCTCTACTCTTTTTTATTAAAACGACACACTAAAAATGAAGTGTGTTATCAGGTCGTTAACAGCCACTGTGCACCCGATAACTGTTAAGCTTACATTTTCATCGCATTAGTTTCACAATTTGCGACGTACACGGTGTGATAGAGCAACCATTGGTCTAATTATAGAATTTTTCAAAAAGCCCCGGGTATAAAATGTAGGGGCGAGAGTTCAAAAAATTTAGTTTTTTTTTAGTTTTATGGTTGATAACAATAATAT</canonical>
            <polymorphic>CTATGCAATTGTTCCTTTCCTGAAAAAATACAAAAAAAAATGAGTGTGAGCATGATTTGAGAGTTTCTAAATCTGAACTTACAGTCAAATGATTTTTAATTATCCTACTCCTCGTCTGGATTTCCGATTCTTCTGGAAAATTGTGACTACAGTAACCACCATACTTCTATAAACTCACTGATATCGACATCCATTTTTCCTTCTTTAAAAGTGGGCCGCAAACTAATCAGTAGAAAATAGAAGTCACCGGTTTTCCGAACCCGACTTGAACGCAAAACTGGGGCTGTTGATGGAGAGGAATGATAGGCCGACCATCATATTGTTTTACTGCCATCATTTACGGCTCTTTCGCCTATTTCTCTGGGCACTCCCACCCGGAGGGGCTCTCTTATCATACGGAATTCCGTAAAATCAACTTTCCTTCCTGATTTACTACCGTTAATTGGGAAAGAGAAAACTGGAAGTTGAGTGCAATTTGGTTTGTGCCACGATTGATGATRCAAGACGGTTGCGCGTGTCTTTAAAAGATAGTAAAAATGTCATATAAGGCAAACAACTGTTTTTACAATGATATATAACTTTACTCCTGTCAAACACTTTCACTCCAAAAATCAAAACTAACATCTAGTCGAAGCACTCAGTATCAGAAAGAATATTTTTCCGCCACTGAACAGTATTCAGCCTATACTGTTTTTCTCGACCACGTGTTACAGCAGCAATAGCAATTTTCGCATGATTTTTTGCTCTCTACTCTTTTTTATTAAAACGACACACTAAAAATGAAGTGTGTTATCAGGTCGTTAACAGCCACTGTGCACCCGATAACTGTTAAGCTTACATTTTCATCGCATTAGTTTCACAATTTGCGACGTACACGGTGTGATAGAGCAACCATTGGTCTAATTATAGAATTTTTCAAAAAGCCCCGGGTATAAAATGTAGGGGCGAGAGTTCAAAAAATTTAGTTTTTTTTTAGTTTTATGGTTGATAACAATAATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGTTTTACTGCCATCATTTAC</pcr_primer_p1>
		<pcr_primer_p2>GTAAAAACAGTTGTTTGCCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTGTTTTACTGCCATCATTTACGGCTCTTTCGCCTATTTCTCTGGGCACTCCCACCCGGAGGGGCTCTCTTATCATACGGAATTCCGTAAAATCAACTTTCCTTCCTGATTTACTACCGTTAATTGGGAAAGAGAAAACTGGAAGTTGAGTGCAATTTGGTTTGTGCCACGATTGATGATACAAGACGGTTGCGCGTGTCTTTAAAAGATAGTAAAAATGTCATATAAGGCAAACAACTGTTTTTAC</canonical_amplicon>
		<polymorphic_amplicon>ATTGTTTTACTGCCATCATTTACGGCTCTTTCGCCTATTTCTCTGGGCACTCCCACCCGGAGGGGCTCTCTTATCATACGGAATTCCGTAAAATCAACTTTCCTTCCTGATTTACTACCGTTAATTGGGAAAGAGAAAACTGGAAGTTGAGTGCAATTTGGTTTGTGCCACGATTGATGATRCAAGACGGTTGCGCGTGTCTTTAAAAGATAGTAAAAATGTCATATAAGGCAAACAACTGTTTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2509</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>340816</contig_pos>
        <strand>+</strand>
        <context>TACCGTTAAT[C/T]GGGAAAGAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATACGGAATTCCGTAAAATCAACTTTCCTTCCTGATTTACTACCGTTAAT</left_flank>
        <right_flank>GGGAAAGAGAAAACTGGAAGTTGAGTGCAATTTGGTTTGTGCCACGATTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACCGAATGGTGACATATCTTCAACCTTGCTCATATGTGTGTCAATTTTTAAGACTATGCAATTGTTCCTTTCCTGAAAAAATACAAAAAAAAATGAGTGTGAGCATGATTTGAGAGTTTCTAAATCTGAACTTACAGTCAAATGATTTTTAATTATCCTACTCCTCGTCTGGATTTCCGATTCTTCTGGAAAATTGTGACTACAGTAACCACCATACTTCTATAAACTCACTGATATCGACATCCATTTTTCCTTCTTTAAAAGTGGGCCGCAAACTAATCAGTAGAAAATAGAAGTCACCGGTTTTCCGAACCCGACTTGAACGCAAAACTGGGGCTGTTGATGGAGAGGAATGATAGGCCGACCATCATATTGTTTTACTGCCATCATTTACGGCTCTTTCGCCTATTTCTCTGGGCACTCCCACCCGGAGGGGCTCTCTTATCATACGGAATTCCGTAAAATCAACTTTCCTTCCTGATTTACTACCGTTAATTGGGAAAGAGAAAACTGGAAGTTGAGTGCAATTTGGTTTGTGCCACGATTGATGATACAAGACGGTTGCGCGTGTCTTTAAAAGATAGTAAAAATGTCATATAAGGCAAACAACTGTTTTTACAATGATATATAACTTTACTCCTGTCAAACACTTTCACTCCAAAAATCAAAACTAACATCTAGTCGAAGCACTCAGTATCAGAAAGAATATTTTTCCGCCACTGAACAGTATTCAGCCTATACTGTTTTTCTCGACCACGTGTTACAGCAGCAATAGCAATTTTCGCATGATTTTTTGCTCTCTACTCTTTTTTATTAAAACGACACACTAAAAATGAAGTGTGTTATCAGGTCGTTAACAGCCACTGTGCACCCGATAACTGTTAAGCTTACATTTTCATCGCATTAGTTTCACAATTTGCGACGTACACGGTGTGATAGAGCAACCATTGGTCTAATTATAGAATTTTTCAAAAAGCCCCGGGTATAAAATGTAGGG</canonical>
            <polymorphic>AAAACCGAATGGTGACATATCTTCAACCTTGCTCATATGTGTGTCAATTTTTAAGACTATGCAATTGTTCCTTTCCTGAAAAAATACAAAAAAAAATGAGTGTGAGCATGATTTGAGAGTTTCTAAATCTGAACTTACAGTCAAATGATTTTTAATTATCCTACTCCTCGTCTGGATTTCCGATTCTTCTGGAAAATTGTGACTACAGTAACCACCATACTTCTATAAACTCACTGATATCGACATCCATTTTTCCTTCTTTAAAAGTGGGCCGCAAACTAATCAGTAGAAAATAGAAGTCACCGGTTTTCCGAACCCGACTTGAACGCAAAACTGGGGCTGTTGATGGAGAGGAATGATAGGCCGACCATCATATTGTTTTACTGCCATCATTTACGGCTCTTTCGCCTATTTCTCTGGGCACTCCCACCCGGAGGGGCTCTCTTATCATACGGAATTCCGTAAAATCAACTTTCCTTCCTGATTTACTACCGTTAATYGGGAAAGAGAAAACTGGAAGTTGAGTGCAATTTGGTTTGTGCCACGATTGATGATACAAGACGGTTGCGCGTGTCTTTAAAAGATAGTAAAAATGTCATATAAGGCAAACAACTGTTTTTACAATGATATATAACTTTACTCCTGTCAAACACTTTCACTCCAAAAATCAAAACTAACATCTAGTCGAAGCACTCAGTATCAGAAAGAATATTTTTCCGCCACTGAACAGTATTCAGCCTATACTGTTTTTCTCGACCACGTGTTACAGCAGCAATAGCAATTTTCGCATGATTTTTTGCTCTCTACTCTTTTTTATTAAAACGACACACTAAAAATGAAGTGTGTTATCAGGTCGTTAACAGCCACTGTGCACCCGATAACTGTTAAGCTTACATTTTCATCGCATTAGTTTCACAATTTGCGACGTACACGGTGTGATAGAGCAACCATTGGTCTAATTATAGAATTTTTCAAAAAGCCCCGGGTATAAAATGTAGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>261 251 137 91 45 41 41 41 35 32 17 8</canonical_bands>
                <polymorphic_bands>261 251 137 91 73 45 41 41 35 17 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGTTTTACTGCCATCATTTAC</pcr_primer_p1>
		<pcr_primer_p2>GTAAAAACAGTTGTTTGCCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTGTTTTACTGCCATCATTTACGGCTCTTTCGCCTATTTCTCTGGGCACTCCCACCCGGAGGGGCTCTCTTATCATACGGAATTCCGTAAAATCAACTTTCCTTCCTGATTTACTACCGTTAATTGGGAAAGAGAAAACTGGAAGTTGAGTGCAATTTGGTTTGTGCCACGATTGATGATACAAGACGGTTGCGCGTGTCTTTAAAAGATAGTAAAAATGTCATATAAGGCAAACAACTGTTTTTAC</canonical_amplicon>
		<polymorphic_amplicon>ATTGTTTTACTGCCATCATTTACGGCTCTTTCGCCTATTTCTCTGGGCACTCCCACCCGGAGGGGCTCTCTTATCATACGGAATTCCGTAAAATCAACTTTCCTTCCTGATTTACTACCGTTAATYGGGAAAGAGAAAACTGGAAGTTGAGTGCAATTTGGTTTGTGCCACGATTGATGATACAAGACGGTTGCGCGTGTCTTTAAAAGATAGTAAAAATGTCATATAAGGCAAACAACTGTTTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2510</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>377729</contig_pos>
        <strand>+</strand>
        <context>TCACCGTTTT[C/T]GGAGGATCCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGATCAACGGACGTACTGTCTTCATCTTCTCCCAGGATTTCACCGTTTT</left_flank>
        <right_flank>GGAGGATCCCTTTCCTCGATTCACGCCAAGAAGATCGTCAAGATCATGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTGTTTCATTTTTCAGAGACTCGGGTATGTTGTCCCGCTTCGCTCGTCAACTGGCACTGCCAGTGTTCAACGGTGTTCTTCATGTAAGTTTCGAAATCATTTGGGACGTTTCAAGTATCTTCCAATTTACAGCCAACCCGTGCCACCAGCTCCATCGCTCATACCATCAAGGTCGCCAAGAAAATCGATGACACCCGCGACAAGGCTCTTCTTGGAGGAGGAAAGAAACGTATCGATGGTCAACATGTTCGCGTGAGTCTGATAATTATTGGGACATGTTCACAAAATCTGTTTACAGGGAAAGCTTACTGCTCGTGAACGCATTGATCTTCTCTTAGACAGAAACACCTTCCGCGAGTACGATATGTTCGCCGAGCACACCTGCAACGACTTCGGTATGCAGAAGGAGAAGTATCCAGGAGATTCGGTTGTCACTGGACGTGGAGAGATCAACGGACGTACTGTCTTCATCTTCTCCCAGGATTTCACCGTTTTTGGAGGATCCCTTTCCTCGATTCACGCCAAGAAGATCGTCAAGATCATGAGAGAAGCCATGCTCGTCGGGGCTCCAGTCATCGGACTCAACGACTCCGGAGGTGCCCGCATTCAAGAAGGAGTTGAATCCCTTGCCGGATACGCCGATATTTTCCAGGAGAACGTTCTCGCTTCGGGAGTTGTTCCACAAATCTCCATGATAATGGGACCATGCGCCGGAGGAGCTGTCTACTCTCCAGCTCTTACTGATTTCACCTTCATGGTTCGTGACACTAGCTACTTGTTCATCACTGGACCAGATGTCGTCAAGGCCGTCACTAACGAGGAGGTCACTCAAGAAGAACTCGGAGGTGCCAAGACACACACTGTCACTTCTGGAGTCGCTCACGGAGCATTCGACAATGACGTTGACGCCCTCATGAGCCTTCGTGAACTCTTCAACTATCTCCCACTCTCCAACACCGATGCTGCACCAATCCGTGCTGCTGAGGATCCATGGGA</canonical>
            <polymorphic>AAAATTGTTTCATTTTTCAGAGACTCGGGTATGTTGTCCCGCTTCGCTCGTCAACTGGCACTGCCAGTGTTCAACGGTGTTCTTCATGTAAGTTTCGAAATCATTTGGGACGTTTCAAGTATCTTCCAATTTACAGCCAACCCGTGCCACCAGCTCCATCGCTCATACCATCAAGGTCGCCAAGAAAATCGATGACACCCGCGACAAGGCTCTTCTTGGAGGAGGAAAGAAACGTATCGATGGTCAACATGTTCGCGTGAGTCTGATAATTATTGGGACATGTTCACAAAATCTGTTTACAGGGAAAGCTTACTGCTCGTGAACGCATTGATCTTCTCTTAGACAGAAACACCTTCCGCGAGTACGATATGTTCGCCGAGCACACCTGCAACGACTTCGGTATGCAGAAGGAGAAGTATCCAGGAGATTCGGTTGTCACTGGACGTGGAGAGATCAACGGACGTACTGTCTTCATCTTCTCCCAGGATTTCACCGTTTTYGGAGGATCCCTTTCCTCGATTCACGCCAAGAAGATCGTCAAGATCATGAGAGAAGCCATGCTCGTCGGGGCTCCAGTCATCGGACTCAACGACTCCGGAGGTGCCCGCATTCAAGAAGGAGTTGAATCCCTTGCCGGATACGCCGATATTTTCCAGGAGAACGTTCTCGCTTCGGGAGTTGTTCCACAAATCTCCATGATAATGGGACCATGCGCCGGAGGAGCTGTCTACTCTCCAGCTCTTACTGATTTCACCTTCATGGTTCGTGACACTAGCTACTTGTTCATCACTGGACCAGATGTCGTCAAGGCCGTCACTAACGAGGAGGTCACTCAAGAAGAACTCGGAGGTGCCAAGACACACACTGTCACTTCTGGAGTCGCTCACGGAGCATTCGACAATGACGTTGACGCCCTCATGAGCCTTCGTGAACTCTTCAACTATCTCCCACTCTCCAACACCGATGCTGCACCAATCCGTGCTGCTGAGGATCCATGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGCATTGATCTTCTCTTAGAC</pcr_primer_p1>
		<pcr_primer_p2>CATGGCTTCTCTCATGATCT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>ACGCATTGATCTTCTCTTAGACAGAAACACCTTCCGCGAGTACGATATGTTCGCCGAGCACACCTGCAACGACTTCGGTATGCAGAAGGAGAAGTATCCAGGAGATTCGGTTGTCACTGGACGTGGAGAGATCAACGGACGTACTGTCTTCATCTTCTCCCAGGATTTCACCGTTTTTGGAGGATCCCTTTCCTCGATTCACGCCAAGAAGATCGTCAAGATCATGAGAGAAGCCATG</canonical_amplicon>
		<polymorphic_amplicon>ACGCATTGATCTTCTCTTAGACAGAAACACCTTCCGCGAGTACGATATGTTCGCCGAGCACACCTGCAACGACTTCGGTATGCAGAAGGAGAAGTATCCAGGAGATTCGGTTGTCACTGGACGTGGAGAGATCAACGGACGTACTGTCTTCATCTTCTCCCAGGATTTCACCGTTTTYGGAGGATCCCTTTCCTCGATTCACGCCAAGAAGATCGTCAAGATCATGAGAGAAGCCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2511</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>383110</contig_pos>
        <strand>+</strand>
        <context>TAATAATTTC[C/G]TTCTTACTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAAGGTTTCCAGCCATGGTGTCCAGCGACTATCAATCTTTTAATAATTTC</left_flank>
        <right_flank>TTCTTACTTACCTGAATCTCTTTCAACGGTCTTCCCATAAACTCCTTGAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGGATGCTGAGAGATGACCTGGAAAACAAAGTATTTTTTTAAGGAAAGCGTTTGGTGATGTGCTTACTTTCTTAAGTTCCATTCTGCTGAACTGTTGCTGATAGGAGATTTCTTCAGGACGAATTCCTCTCATCTCGATGAAGTTGTTCACGTTGTCGAAGAATGTCTGGAATTTGATTATTGGTAGTTAGATGAAGGCGTTCTGTCACAGAATCTCTGATTCAGGTCTATACAACTGTCCTGAATCTTTTCTGTATTCTTCCGAAAAACCCCCTTTTTATTTGAGAATACCGTAAAGTGCCACTGAGTTTCCATAGTTATTTTTGACCAATTTTTGACGATGACAGGAAAACACTGGGAATCATTAAGAAAAAATTACGGTACATGATGTTTTTTTGAAGTCTGCGCGTTTAACTAAAATTAGCCCTCTAGGTGCGTTGATTTTGGACAAGGTTTCCAGCCATGGTGTCCAGCGACTATCAATCTTTTAATAATTTCCTTCTTACTTACCTGAATCTCTTTCAACGGTCTTCCCATAAACTCCTTGACATATGCATCAATGTGTTCTTCTTTCAGCGCCTTCGCATCCTTCCTCTGTTGATCAAGACACGAAATCTTCAATTCTGACAGAGTTACTAAAAAAGAAAAATTAATTTAAAACTGATACACTTCAAACTGACAGTAAAGCTCGTGGTAGTTCTCAAACTTCACCACCGACGACGGCGATTTGCTGTATGGATTGGCTGCTGCTTTCTGGATTCCATCACAAACCGCACGGCACAGATTGAAATAGGCCTTCTCAAGATCGGTACGTCTCTCAGCGTTCTCGAAAATTGTCTCTGCGCGTCTGACAAACCCGGCAAAACGAGCGATGGATGGGAGGATACCGATTCTTGTCTTCTTCACGATACGGACTTCAGAGTATTGGCCACATTCCATTTGCTGAAAAAAATTATTGTTTTCTTTGAAATTATTCCTTAACAACTCACAATGAAAGCA</canonical>
            <polymorphic>CAGGATGCTGAGAGATGACCTGGAAAACAAAGTATTTTTTTAAGGAAAGCGTTTGGTGATGTGCTTACTTTCTTAAGTTCCATTCTGCTGAACTGTTGCTGATAGGAGATTTCTTCAGGACGAATTCCTCTCATCTCGATGAAGTTGTTCACGTTGTCGAAGAATGTCTGGAATTTGATTATTGGTAGTTAGATGAAGGCGTTCTGTCACAGAATCTCTGATTCAGGTCTATACAACTGTCCTGAATCTTTTCTGTATTCTTCCGAAAAACCCCCTTTTTATTTGAGAATACCGTAAAGTGCCACTGAGTTTCCATAGTTATTTTTGACCAATTTTTGACGATGACAGGAAAACACTGGGAATCATTAAGAAAAAATTACGGTACATGATGTTTTTTTGAAGTCTGCGCGTTTAACTAAAATTAGCCCTCTAGGTGCGTTGATTTTGGACAAGGTTTCCAGCCATGGTGTCCAGCGACTATCAATCTTTTAATAATTTCSTTCTTACTTACCTGAATCTCTTTCAACGGTCTTCCCATAAACTCCTTGACATATGCATCAATGTGTTCTTCTTTCAGCGCCTTCGCATCCTTCCTCTGTTGATCAAGACACGAAATCTTCAATTCTGACAGAGTTACTAAAAAAGAAAAATTAATTTAAAACTGATACACTTCAAACTGACAGTAAAGCTCGTGGTAGTTCTCAAACTTCACCACCGACGACGGCGATTTGCTGTATGGATTGGCTGCTGCTTTCTGGATTCCATCACAAACCGCACGGCACAGATTGAAATAGGCCTTCTCAAGATCGGTACGTCTCTCAGCGTTCTCGAAAATTGTCTCTGCGCGTCTGACAAACCCGGCAAAACGAGCGATGGATGGGAGGATACCGATTCTTGTCTTCTTCACGATACGGACTTCAGAGTATTGGCCACATTCCATTTGCTGAAAAAAATTATTGTTTTCTTTGAAATTATTCCTTAACAACTCACAATGAAAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTCCATAGTTATTTTTGACCA</pcr_primer_p1>
		<pcr_primer_p2>ATGCATATGTCAAGGAGTTTATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTCCATAGTTATTTTTGACCAATTTTTGACGATGACAGGAAAACACTGGGAATCATTAAGAAAAAATTACGGTACATGATGTTTTTTTGAAGTCTGCGCGTTTAACTAAAATTAGCCCTCTAGGTGCGTTGATTTTGGACAAGGTTTCCAGCCATGGTGTCCAGCGACTATCAATCTTTTAATAATTTCCTTCTTACTTACCTGAATCTCTTTCAACGGTCTTCCCATAAACTCCTTGACATATGCAT</canonical_amplicon>
		<polymorphic_amplicon>GTTTCCATAGTTATTTTTGACCAATTTTTGACGATGACAGGAAAACACTGGGAATCATTAAGAAAAAATTACGGTACATGATGTTTTTTTGAAGTCTGCGCGTTTAACTAAAATTAGCCCTCTAGGTGCGTTGATTTTGGACAAGGTTTCCAGCCATGGTGTCCAGCGACTATCAATCTTTTAATAATTTCSTTCTTACTTACCTGAATCTCTTTCAACGGTCTTCCCATAAACTCCTTGACATATGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2512</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>383020</contig_pos>
        <strand>+</strand>
        <context>AAGTCTGCGC[A/G]TTTAACTAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATCATTAAGAAAAAATTACGGTACATGATGTTTTTTTGAAGTCTGCGC</left_flank>
        <right_flank>TTTAACTAAAATTAGCCCTCTAGGTGCGTTGATTTTGGACAAGGTTTCCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAGACGACTTGAAGAAGGGACGAGTTGGCAACCAGATTCTTCTCAATCTTTTTGTACAGTTGTTCGAGACCTTTCTTAACCTCTTTTCCAGGATGCTGAGAGATGACCTGGAAAACAAAGTATTTTTTTAAGGAAAGCGTTTGGTGATGTGCTTACTTTCTTAAGTTCCATTCTGCTGAACTGTTGCTGATAGGAGATTTCTTCAGGACGAATTCCTCTCATCTCGATGAAGTTGTTCACGTTGTCGAAGAATGTCTGGAATTTGATTATTGGTAGTTAGATGAAGGCGTTCTGTCACAGAATCTCTGATTCAGGTCTATACAACTGTCCTGAATCTTTTCTGTATTCTTCCGAAAAACCCCCTTTTTATTTGAGAATACCGTAAAGTGCCACTGAGTTTCCATAGTTATTTTTGACCAATTTTTGACGATGACAGGAAAACACTGGGAATCATTAAGAAAAAATTACGGTACATGATGTTTTTTTGAAGTCTGCGCGTTTAACTAAAATTAGCCCTCTAGGTGCGTTGATTTTGGACAAGGTTTCCAGCCATGGTGTCCAGCGACTATCAATCTTTTAATAATTTCCTTCTTACTTACCTGAATCTCTTTCAACGGTCTTCCCATAAACTCCTTGACATATGCATCAATGTGTTCTTCTTTCAGCGCCTTCGCATCCTTCCTCTGTTGATCAAGACACGAAATCTTCAATTCTGACAGAGTTACTAAAAAAGAAAAATTAATTTAAAACTGATACACTTCAAACTGACAGTAAAGCTCGTGGTAGTTCTCAAACTTCACCACCGACGACGGCGATTTGCTGTATGGATTGGCTGCTGCTTTCTGGATTCCATCACAAACCGCACGGCACAGATTGAAATAGGCCTTCTCAAGATCGGTACGTCTCTCAGCGTTCTCGAAAATTGTCTCTGCGCGTCTGACAAACCCGGCAAAACGAGCGATGGATGGGAGGATACCGATTCTTGTCTTCTTCACGAT</canonical>
            <polymorphic>TCCAGACGACTTGAAGAAGGGACGAGTTGGCAACCAGATTCTTCTCAATCTTTTTGTACAGTTGTTCGAGACCTTTCTTAACCTCTTTTCCAGGATGCTGAGAGATGACCTGGAAAACAAAGTATTTTTTTAAGGAAAGCGTTTGGTGATGTGCTTACTTTCTTAAGTTCCATTCTGCTGAACTGTTGCTGATAGGAGATTTCTTCAGGACGAATTCCTCTCATCTCGATGAAGTTGTTCACGTTGTCGAAGAATGTCTGGAATTTGATTATTGGTAGTTAGATGAAGGCGTTCTGTCACAGAATCTCTGATTCAGGTCTATACAACTGTCCTGAATCTTTTCTGTATTCTTCCGAAAAACCCCCTTTTTATTTGAGAATACCGTAAAGTGCCACTGAGTTTCCATAGTTATTTTTGACCAATTTTTGACGATGACAGGAAAACACTGGGAATCATTAAGAAAAAATTACGGTACATGATGTTTTTTTGAAGTCTGCGCRTTTAACTAAAATTAGCCCTCTAGGTGCGTTGATTTTGGACAAGGTTTCCAGCCATGGTGTCCAGCGACTATCAATCTTTTAATAATTTCCTTCTTACTTACCTGAATCTCTTTCAACGGTCTTCCCATAAACTCCTTGACATATGCATCAATGTGTTCTTCTTTCAGCGCCTTCGCATCCTTCCTCTGTTGATCAAGACACGAAATCTTCAATTCTGACAGAGTTACTAAAAAAGAAAAATTAATTTAAAACTGATACACTTCAAACTGACAGTAAAGCTCGTGGTAGTTCTCAAACTTCACCACCGACGACGGCGATTTGCTGTATGGATTGGCTGCTGCTTTCTGGATTCCATCACAAACCGCACGGCACAGATTGAAATAGGCCTTCTCAAGATCGGTACGTCTCTCAGCGTTCTCGAAAATTGTCTCTGCGCGTCTGACAAACCCGGCAAAACGAGCGATGGATGGGAGGATACCGATTCTTGTCTTCTTCACGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>498 437 65</canonical_bands>
                <polymorphic_bands>935 65</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTCCATAGTTATTTTTGACCA</pcr_primer_p1>
		<pcr_primer_p2>ATGCATATGTCAAGGAGTTTATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTCCATAGTTATTTTTGACCAATTTTTGACGATGACAGGAAAACACTGGGAATCATTAAGAAAAAATTACGGTACATGATGTTTTTTTGAAGTCTGCGCGTTTAACTAAAATTAGCCCTCTAGGTGCGTTGATTTTGGACAAGGTTTCCAGCCATGGTGTCCAGCGACTATCAATCTTTTAATAATTTCCTTCTTACTTACCTGAATCTCTTTCAACGGTCTTCCCATAAACTCCTTGACATATGCAT</canonical_amplicon>
		<polymorphic_amplicon>GTTTCCATAGTTATTTTTGACCAATTTTTGACGATGACAGGAAAACACTGGGAATCATTAAGAAAAAATTACGGTACATGATGTTTTTTTGAAGTCTGCGCRTTTAACTAAAATTAGCCCTCTAGGTGCGTTGATTTTGGACAAGGTTTCCAGCCATGGTGTCCAGCGACTATCAATCTTTTAATAATTTCCTTCTTACTTACCTGAATCTCTTTCAACGGTCTTCCCATAAACTCCTTGACATATGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2513</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>382958</contig_pos>
        <strand>+</strand>
        <context>GACGATGACA[C/G]GAAAACACTG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGTGCCACTGAGTTTCCATAGTTATTTTTGACCAATTTTTGACGATGACA</left_flank>
        <right_flank>GAAAACACTGGGAATCATTAAGAAAAAATTACGGTACATGATGTTTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAGGTTAGAATCAACTTGTTGTACTCGGCAATCTGCTTGATGAACTGCTCCTGCATGTCTCTCCAGACGACTTGAAGAAGGGACGAGTTGGCAACCAGATTCTTCTCAATCTTTTTGTACAGTTGTTCGAGACCTTTCTTAACCTCTTTTCCAGGATGCTGAGAGATGACCTGGAAAACAAAGTATTTTTTTAAGGAAAGCGTTTGGTGATGTGCTTACTTTCTTAAGTTCCATTCTGCTGAACTGTTGCTGATAGGAGATTTCTTCAGGACGAATTCCTCTCATCTCGATGAAGTTGTTCACGTTGTCGAAGAATGTCTGGAATTTGATTATTGGTAGTTAGATGAAGGCGTTCTGTCACAGAATCTCTGATTCAGGTCTATACAACTGTCCTGAATCTTTTCTGTATTCTTCCGAAAAACCCCCTTTTTATTTGAGAATACCGTAAAGTGCCACTGAGTTTCCATAGTTATTTTTGACCAATTTTTGACGATGACAGGAAAACACTGGGAATCATTAAGAAAAAATTACGGTACATGATGTTTTTTTGAAGTCTGCGCGTTTAACTAAAATTAGCCCTCTAGGTGCGTTGATTTTGGACAAGGTTTCCAGCCATGGTGTCCAGCGACTATCAATCTTTTAATAATTTCCTTCTTACTTACCTGAATCTCTTTCAACGGTCTTCCCATAAACTCCTTGACATATGCATCAATGTGTTCTTCTTTCAGCGCCTTCGCATCCTTCCTCTGTTGATCAAGACACGAAATCTTCAATTCTGACAGAGTTACTAAAAAAGAAAAATTAATTTAAAACTGATACACTTCAAACTGACAGTAAAGCTCGTGGTAGTTCTCAAACTTCACCACCGACGACGGCGATTTGCTGTATGGATTGGCTGCTGCTTTCTGGATTCCATCACAAACCGCACGGCACAGATTGAAATAGGCCTTCTCAAGATCGGTACGTCTCTCAGCGTTCTCGAAAATTGTCTCTGCGCGT</canonical>
            <polymorphic>GCAGGTTAGAATCAACTTGTTGTACTCGGCAATCTGCTTGATGAACTGCTCCTGCATGTCTCTCCAGACGACTTGAAGAAGGGACGAGTTGGCAACCAGATTCTTCTCAATCTTTTTGTACAGTTGTTCGAGACCTTTCTTAACCTCTTTTCCAGGATGCTGAGAGATGACCTGGAAAACAAAGTATTTTTTTAAGGAAAGCGTTTGGTGATGTGCTTACTTTCTTAAGTTCCATTCTGCTGAACTGTTGCTGATAGGAGATTTCTTCAGGACGAATTCCTCTCATCTCGATGAAGTTGTTCACGTTGTCGAAGAATGTCTGGAATTTGATTATTGGTAGTTAGATGAAGGCGTTCTGTCACAGAATCTCTGATTCAGGTCTATACAACTGTCCTGAATCTTTTCTGTATTCTTCCGAAAAACCCCCTTTTTATTTGAGAATACCGTAAAGTGCCACTGAGTTTCCATAGTTATTTTTGACCAATTTTTGACGATGACASGAAAACACTGGGAATCATTAAGAAAAAATTACGGTACATGATGTTTTTTTGAAGTCTGCGCGTTTAACTAAAATTAGCCCTCTAGGTGCGTTGATTTTGGACAAGGTTTCCAGCCATGGTGTCCAGCGACTATCAATCTTTTAATAATTTCCTTCTTACTTACCTGAATCTCTTTCAACGGTCTTCCCATAAACTCCTTGACATATGCATCAATGTGTTCTTCTTTCAGCGCCTTCGCATCCTTCCTCTGTTGATCAAGACACGAAATCTTCAATTCTGACAGAGTTACTAAAAAAGAAAAATTAATTTAAAACTGATACACTTCAAACTGACAGTAAAGCTCGTGGTAGTTCTCAAACTTCACCACCGACGACGGCGATTTGCTGTATGGATTGGCTGCTGCTTTCTGGATTCCATCACAAACCGCACGGCACAGATTGAAATAGGCCTTCTCAAGATCGGTACGTCTCTCAGCGTTCTCGAAAATTGTCTCTGCGCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTGAGAATACCGTAAAGTGC</pcr_primer_p1>
		<pcr_primer_p2>CGTTGAAAGAGATTCAGGTAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATTTGAGAATACCGTAAAGTGCCACTGAGTTTCCATAGTTATTTTTGACCAATTTTTGACGATGACAGGAAAACACTGGGAATCATTAAGAAAAAATTACGGTACATGATGTTTTTTTGAAGTCTGCGCGTTTAACTAAAATTAGCCCTCTAGGTGCGTTGATTTTGGACAAGGTTTCCAGCCATGGTGTCCAGCGACTATCAATCTTTTAATAATTTCCTTCTTACTTACCTGAATCTCTTTCAACG</canonical_amplicon>
		<polymorphic_amplicon>TATTTGAGAATACCGTAAAGTGCCACTGAGTTTCCATAGTTATTTTTGACCAATTTTTGACGATGACASGAAAACACTGGGAATCATTAAGAAAAAATTACGGTACATGATGTTTTTTTGAAGTCTGCGCGTTTAACTAAAATTAGCCCTCTAGGTGCGTTGATTTTGGACAAGGTTTCCAGCCATGGTGTCCAGCGACTATCAATCTTTTAATAATTTCCTTCTTACTTACCTGAATCTCTTTCAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2514</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>385891</contig_pos>
        <strand></strand>
        <context>AATCTGACTA[G/A]GAATCTGCGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGTTATGTGGAACTCGGGTGATGGCTAAAAAAAAAATCGAAATCTGACTA</left_flank>
        <right_flank>GAATCTGCGGAAATCGTGTATTTTTAAGGTTAAGATCTACGATAAGAGCT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTCAGTGCTGCGTCAATACTGGACAACAACTGGTTAACCGAATTCTCGCTATCCATCATTGAATTGATATTGGCTCCATCCAACGACTGCAATTGCTCGGTGAGCATCTCGGCAAACGCATGAGCATCGCCAATTGTCAAGTTGGCTCTTTCAATGAGCTTTCGGAAATCCGCGTCTTCCTTTGCCGATACAGGTTGGTAGTCGCTGGCCATGGCGATGTCGTGCTCTGGGAGCTCAATGGGTATGATCGAGGCTTCTGCTTCGAGTTGTGGGAGAGAGAAGTTGCAAAAGTCGGGCATCTGGACAGGGAGATACTGGCAAGAGAGCTGAAATTGTCAAAATTTAGTTGGAATTGGAATGGAGAATTGTCACCTTATACAACTCTCGAATAAAATCATCCTTCTCGTTTGCTGATCCGGCAAGAATCACATATTGACGGTCTCCAATAGTTATGTGGAACTCGGGTGATGGCTAAAAAAAAAATCGAAATCTGACTAGGAATCTGCGGAAATCGTGTATTTTTAAGGTTAAGATCTACGATAAGAGCTCGCCCATGTGCTTATTAGAATCTGTCCACAATTTCATACCTTTTTTGGATTGATCCCATCAATTTCTCTGACTTCTCGAAGGTTGAACCGGTCTTTTTTCTTGAATGTATCATCCTTTTCTCCTTTGACAAAGTAGAGCCGTACAGCGATCGGGTGTTCGATAGTAACTACAACTGTGCAGTATTGTAGACAATCAATTCTTTAAAAAATTAAATTTTACCTGCCAAGCAGAGAAGCGTCTGATTTTTCTTCTTCTTTCCGTCCAATTTATTCACATTCACAATCGCCTGAATCCGTTCATCGTCCTTCTGGAAGAGTTGTCGTTGGATGATCTTCCTAATTGCAGACATTTGCTTCTGAAATAATTTTTAATGATGATTTTAACGATGAATCAGTGTAAAAAAAGACAAAATGAGCGAAACATTCAACAAGAATAAACAATGCAACATC</canonical>
            <polymorphic>CAGTCAGTGCTGCGTCAATACTGGACAACAACTGGTTAACCGAATTCTCGCTATCCATCATTGAATTGATATTGGCTCCATCCAACGACTGCAATTGCTCGGTGAGCATCTCGGCAAACGCATGAGCATCGCCAATTGTCAAGTTGGCTCTTTCAATGAGCTTTCGGAAATCCGCGTCTTCCTTTGCCGATACAGGTTGGTAGTCGCTGGCCATGGCGATGTCGTGCTCTGGGAGCTCAATGGGTATGATCGAGGCTTCTGCTTCGAGTTGTGGGAGAGAGAAGTTGCAAAAGTCGGGCATCTGGACAGGGAGATACTGGCAAGAGAGCTGAAATTGTCAAAATTTAGTTGGAATTGGAATGGAGAATTGTCACCTTATACAACTCTCGAATAAAATCATCCTTCTCGTTTGCTGATCCGGCAAGAATCACATATTGACGGTCTCCAATAGTTATGTGGAACTCGGGTGATGGCTAAAAAAAAAATCGAAATCTGACTARGAATCTGCGGAAATCGTGTATTTTTAAGGTTAAGATCTACGATAAGAGCTCGCCCATGTGCTTATTAGAATCTGTCCACAATTTCATACCTTTTTTGGATTGATCCCATCAATTTCTCTGACTTCTCGAAGGTTGAACCGGTCTTTTTTCTTGAATGTATCATCCTTTTCTCCTTTGACAAAGTAGAGCCGTACAGCGATCGGGTGTTCGATAGTAACTACAACTGTGCAGTATTGTAGACAATCAATTCTTTAAAAAATTAAATTTTACCTGCCAAGCAGAGAAGCGTCTGATTTTTCTTCTTCTTTCCGTCCAATTTATTCACATTCACAATCGCCTGAATCCGTTCATCGTCCTTCTGGAAGAGTTGTCGTTGGATGATCTTCCTAATTGCAGACATTTGCTTCTGAAATAATTTTTAATGATGATTTTAACGATGAATCAGTGTAAAAAAAGACAAAATGAGCGAAACATTCAACAAGAATAAACAATGCAACATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAATCACATATTGACGGTCT</pcr_primer_p1>
		<pcr_primer_p2>GAGAAAAGGATGATACATTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAATCACATATTGACGGTCTCCAATAGTTATGTGGAACTCGGGTGATGGCTAAAAAAAAAATCGAAATCTGACTAGGAATCTGCGGAAATCGTGTATTTTTAAGGTTAAGATCTACGATAAGAGCTCGCCCATGTGCTTATTAGAATCTGTCCACAATTTCATACCTTTTTTGGATTGATCCCATCAATTTCTCTGACTTCTCGAAGGTTGAACCGGTCTTTTTTCTTGAATGTATCATCCTTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>AAGAATCACATATTGACGGTCTCCAATAGTTATGTGGAACTCGGGTGATGGCTAAAAAAAAAATCGAAATCTGACTARGAATCTGCGGAAATCGTGTATTTTTAAGGTTAAGATCTACGATAAGAGCTCGCCCATGTGCTTATTAGAATCTGTCCACAATTTCATACCTTTTTTGGATTGATCCCATCAATTTCTCTGACTTCTCGAAGGTTGAACCGGTCTTTTTTCTTGAATGTATCATCCTTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2515</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>385916</contig_pos>
        <strand>+</strand>
        <context>CGTGTATTTT[C/T]AAGGTTAAKA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAAAAAAAATCGAAATCTGACTAGGAATCTGCGGAAATCGTGTATTTT</left_flank>
        <right_flank>AAGGTTAAGATCTACGATAAGAGCTCGCCCATGTGCTTATTAGAATCTGT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACAACTGGTTAACCGAATTCTCGCTATCCATCATTGAATTGATATTGGCTCCATCCAACGACTGCAATTGCTCGGTGAGCATCTCGGCAAACGCATGAGCATCGCCAATTGTCAAGTTGGCTCTTTCAATGAGCTTTCGGAAATCCGCGTCTTCCTTTGCCGATACAGGTTGGTAGTCGCTGGCCATGGCGATGTCGTGCTCTGGGAGCTCAATGGGTATGATCGAGGCTTCTGCTTCGAGTTGTGGGAGAGAGAAGTTGCAAAAGTCGGGCATCTGGACAGGGAGATACTGGCAAGAGAGCTGAAATTGTCAAAATTTAGTTGGAATTGGAATGGAGAATTGTCACCTTATACAACTCTCGAATAAAATCATCCTTCTCGTTTGCTGATCCGGCAAGAATCACATATTGACGGTCTCCAATAGTTATGTGGAACTCGGGTGATGGCTAAAAAAAAAATCGAAATCTGACTAGGAATCTGCGGAAATCGTGTATTTTTAAGGTTAAGATCTACGATAAGAGCTCGCCCATGTGCTTATTAGAATCTGTCCACAATTTCATACCTTTTTTGGATTGATCCCATCAATTTCTCTGACTTCTCGAAGGTTGAACCGGTCTTTTTTCTTGAATGTATCATCCTTTTCTCCTTTGACAAAGTAGAGCCGTACAGCGATCGGGTGTTCGATAGTAACTACAACTGTGCAGTATTGTAGACAATCAATTCTTTAAAAAATTAAATTTTACCTGCCAAGCAGAGAAGCGTCTGATTTTTCTTCTTCTTTCCGTCCAATTTATTCACATTCACAATCGCCTGAATCCGTTCATCGTCCTTCTGGAAGAGTTGTCGTTGGATGATCTTCCTAATTGCAGACATTTGCTTCTGAAATAATTTTTAATGATGATTTTAACGATGAATCAGTGTAAAAAAAGACAAAATGAGCGAAACATTCAACAAGAATAAACAATGCAACATCCCGCATCACCAAATGTGTCCAAGAT</canonical>
            <polymorphic>CAACAACTGGTTAACCGAATTCTCGCTATCCATCATTGAATTGATATTGGCTCCATCCAACGACTGCAATTGCTCGGTGAGCATCTCGGCAAACGCATGAGCATCGCCAATTGTCAAGTTGGCTCTTTCAATGAGCTTTCGGAAATCCGCGTCTTCCTTTGCCGATACAGGTTGGTAGTCGCTGGCCATGGCGATGTCGTGCTCTGGGAGCTCAATGGGTATGATCGAGGCTTCTGCTTCGAGTTGTGGGAGAGAGAAGTTGCAAAAGTCGGGCATCTGGACAGGGAGATACTGGCAAGAGAGCTGAAATTGTCAAAATTTAGTTGGAATTGGAATGGAGAATTGTCACCTTATACAACTCTCGAATAAAATCATCCTTCTCGTTTGCTGATCCGGCAAGAATCACATATTGACGGTCTCCAATAGTTATGTGGAACTCGGGTGATGGCTAAAAAAAAAATCGAAATCTGACTAGGAATCTGCGGAAATCGTGTATTTTYAAGGTTAAGATCTACGATAAGAGCTCGCCCATGTGCTTATTAGAATCTGTCCACAATTTCATACCTTTTTTGGATTGATCCCATCAATTTCTCTGACTTCTCGAAGGTTGAACCGGTCTTTTTTCTTGAATGTATCATCCTTTTCTCCTTTGACAAAGTAGAGCCGTACAGCGATCGGGTGTTCGATAGTAACTACAACTGTGCAGTATTGTAGACAATCAATTCTTTAAAAAATTAAATTTTACCTGCCAAGCAGAGAAGCGTCTGATTTTTCTTCTTCTTTCCGTCCAATTTATTCACATTCACAATCGCCTGAATCCGTTCATCGTCCTTCTGGAAGAGTTGTCGTTGGATGATCTTCCTAATTGCAGACATTTGCTTCTGAAATAATTTTTAATGATGATTTTAACGATGAATCAGTGTAAAAAAAGACAAAATGAGCGAAACATTCAACAAGAATAAACAATGCAACATCCCGCATCACCAAATGTGTCCAAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>488 222 159 94 12 11 8 6</canonical_bands>
                <polymorphic_bands>494 222 159 94 12 11 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAATCACATATTGACGGTCT</pcr_primer_p1>
		<pcr_primer_p2>GAGAAAAGGATGATACATTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAATCACATATTGACGGTCTCCAATAGTTATGTGGAACTCGGGTGATGGCTAAAAAAAAAATCGAAATCTGACTAGGAATCTGCGGAAATCGTGTATTTTTAAGGTTAAGATCTACGATAAGAGCTCGCCCATGTGCTTATTAGAATCTGTCCACAATTTCATACCTTTTTTGGATTGATCCCATCAATTTCTCTGACTTCTCGAAGGTTGAACCGGTCTTTTTTCTTGAATGTATCATCCTTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>AAGAATCACATATTGACGGTCTCCAATAGTTATGTGGAACTCGGGTGATGGCTAAAAAAAAAATCGAAATCTGACTAGGAATCTGCGGAAATCGTGTATTTTYAAGGTTAAGATCTACGATAAGAGCTCGCCCATGTGCTTATTAGAATCTGTCCACAATTTCATACCTTTTTTGGATTGATCCCATCAATTTCTCTGACTTCTCGAAGGTTGAACCGGTCTTTTTTCTTGAATGTATCATCCTTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2516</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>385925</contig_pos>
        <strand>+</strand>
        <context>TYAAGGTTAA[G/T]ATCTACGATA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATCGAAATCTGACTAGGAATCTGCGGAAATCGTGTATTTTTAAGGTTAA</left_flank>
        <right_flank>ATCTACGATAAGAGCTCGCCCATGTGCTTATTAGAATCTGTCCACAATTT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTAACCGAATTCTCGCTATCCATCATTGAATTGATATTGGCTCCATCCAACGACTGCAATTGCTCGGTGAGCATCTCGGCAAACGCATGAGCATCGCCAATTGTCAAGTTGGCTCTTTCAATGAGCTTTCGGAAATCCGCGTCTTCCTTTGCCGATACAGGTTGGTAGTCGCTGGCCATGGCGATGTCGTGCTCTGGGAGCTCAATGGGTATGATCGAGGCTTCTGCTTCGAGTTGTGGGAGAGAGAAGTTGCAAAAGTCGGGCATCTGGACAGGGAGATACTGGCAAGAGAGCTGAAATTGTCAAAATTTAGTTGGAATTGGAATGGAGAATTGTCACCTTATACAACTCTCGAATAAAATCATCCTTCTCGTTTGCTGATCCGGCAAGAATCACATATTGACGGTCTCCAATAGTTATGTGGAACTCGGGTGATGGCTAAAAAAAAAATCGAAATCTGACTAGGAATCTGCGGAAATCGTGTATTTTTAAGGTTAAGATCTACGATAAGAGCTCGCCCATGTGCTTATTAGAATCTGTCCACAATTTCATACCTTTTTTGGATTGATCCCATCAATTTCTCTGACTTCTCGAAGGTTGAACCGGTCTTTTTTCTTGAATGTATCATCCTTTTCTCCTTTGACAAAGTAGAGCCGTACAGCGATCGGGTGTTCGATAGTAACTACAACTGTGCAGTATTGTAGACAATCAATTCTTTAAAAAATTAAATTTTACCTGCCAAGCAGAGAAGCGTCTGATTTTTCTTCTTCTTTCCGTCCAATTTATTCACATTCACAATCGCCTGAATCCGTTCATCGTCCTTCTGGAAGAGTTGTCGTTGGATGATCTTCCTAATTGCAGACATTTGCTTCTGAAATAATTTTTAATGATGATTTTAACGATGAATCAGTGTAAAAAAAGACAAAATGAGCGAAACATTCAACAAGAATAAACAATGCAACATCCCGCATCACCAAATGTGTCCAAGATCGTCTCTGT</canonical>
            <polymorphic>GTTAACCGAATTCTCGCTATCCATCATTGAATTGATATTGGCTCCATCCAACGACTGCAATTGCTCGGTGAGCATCTCGGCAAACGCATGAGCATCGCCAATTGTCAAGTTGGCTCTTTCAATGAGCTTTCGGAAATCCGCGTCTTCCTTTGCCGATACAGGTTGGTAGTCGCTGGCCATGGCGATGTCGTGCTCTGGGAGCTCAATGGGTATGATCGAGGCTTCTGCTTCGAGTTGTGGGAGAGAGAAGTTGCAAAAGTCGGGCATCTGGACAGGGAGATACTGGCAAGAGAGCTGAAATTGTCAAAATTTAGTTGGAATTGGAATGGAGAATTGTCACCTTATACAACTCTCGAATAAAATCATCCTTCTCGTTTGCTGATCCGGCAAGAATCACATATTGACGGTCTCCAATAGTTATGTGGAACTCGGGTGATGGCTAAAAAAAAAATCGAAATCTGACTAGGAATCTGCGGAAATCGTGTATTTTTAAGGTTAAKATCTACGATAAGAGCTCGCCCATGTGCTTATTAGAATCTGTCCACAATTTCATACCTTTTTTGGATTGATCCCATCAATTTCTCTGACTTCTCGAAGGTTGAACCGGTCTTTTTTCTTGAATGTATCATCCTTTTCTCCTTTGACAAAGTAGAGCCGTACAGCGATCGGGTGTTCGATAGTAACTACAACTGTGCAGTATTGTAGACAATCAATTCTTTAAAAAATTAAATTTTACCTGCCAAGCAGAGAAGCGTCTGATTTTTCTTCTTCTTTCCGTCCAATTTATTCACATTCACAATCGCCTGAATCCGTTCATCGTCCTTCTGGAAGAGTTGTCGTTGGATGATCTTCCTAATTGCAGACATTTGCTTCTGAAATAATTTTTAATGATGATTTTAACGATGAATCAGTGTAAAAAAAGACAAAATGAGCGAAACATTCAACAAGAATAAACAATGCAACATCCCGCATCACCAAATGTGTCCAAGATCGTCTCTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>213 182 167 143 119 96 68 12</canonical_bands>
                <polymorphic_bands>213 187 182 167 143 96 12</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAATCACATATTGACGGTCT</pcr_primer_p1>
		<pcr_primer_p2>GAGAAAAGGATGATACATTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAATCACATATTGACGGTCTCCAATAGTTATGTGGAACTCGGGTGATGGCTAAAAAAAAAATCGAAATCTGACTAGGAATCTGCGGAAATCGTGTATTTTTAAGGTTAAGATCTACGATAAGAGCTCGCCCATGTGCTTATTAGAATCTGTCCACAATTTCATACCTTTTTTGGATTGATCCCATCAATTTCTCTGACTTCTCGAAGGTTGAACCGGTCTTTTTTCTTGAATGTATCATCCTTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>AAGAATCACATATTGACGGTCTCCAATAGTTATGTGGAACTCGGGTGATGGCTAAAAAAAAAATCGAAATCTGACTAGGAATCTGCGGAAATCGTGTATTTTTAAGGTTAAKATCTACGATAAGAGCTCGCCCATGTGCTTATTAGAATCTGTCCACAATTTCATACCTTTTTTGGATTGATCCCATCAATTTCTCTGACTTCTCGAAGGTTGAACCGGTCTTTTTTCTTGAATGTATCATCCTTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2517</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>385987</contig_pos>
        <strand>+</strand>
        <context>ATACCTTTTT[C/T]GGATTGATCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGCTCGCCCATGTGCTTATTAGAATCTGTCCACAATTTCATACCTTTTT</left_flank>
        <right_flank>GGATTGATCCCATCAATTTCTCTGACTTCTCGAAGGTTGAACCGGTCTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCGGTGAGCATCTCGGCAAACGCATGAGCATCGCCAATTGTCAAGTTGGCTCTTTCAATGAGCTTTCGGAAATCCGCGTCTTCCTTTGCCGATACAGGTTGGTAGTCGCTGGCCATGGCGATGTCGTGCTCTGGGAGCTCAATGGGTATGATCGAGGCTTCTGCTTCGAGTTGTGGGAGAGAGAAGTTGCAAAAGTCGGGCATCTGGACAGGGAGATACTGGCAAGAGAGCTGAAATTGTCAAAATTTAGTTGGAATTGGAATGGAGAATTGTCACCTTATACAACTCTCGAATAAAATCATCCTTCTCGTTTGCTGATCCGGCAAGAATCACATATTGACGGTCTCCAATAGTTATGTGGAACTCGGGTGATGGCTAAAAAAAAAATCGAAATCTGACTAGGAATCTGCGGAAATCGTGTATTTTTAAGGTTAAGATCTACGATAAGAGCTCGCCCATGTGCTTATTAGAATCTGTCCACAATTTCATACCTTTTTTGGATTGATCCCATCAATTTCTCTGACTTCTCGAAGGTTGAACCGGTCTTTTTTCTTGAATGTATCATCCTTTTCTCCTTTGACAAAGTAGAGCCGTACAGCGATCGGGTGTTCGATAGTAACTACAACTGTGCAGTATTGTAGACAATCAATTCTTTAAAAAATTAAATTTTACCTGCCAAGCAGAGAAGCGTCTGATTTTTCTTCTTCTTTCCGTCCAATTTATTCACATTCACAATCGCCTGAATCCGTTCATCGTCCTTCTGGAAGAGTTGTCGTTGGATGATCTTCCTAATTGCAGACATTTGCTTCTGAAATAATTTTTAATGATGATTTTAACGATGAATCAGTGTAAAAAAAGACAAAATGAGCGAAACATTCAACAAGAATAAACAATGCAACATCCCGCATCACCAAATGTGTCCAAGATCGTCTCTGTGTCTCTCCCGTTTATGTATATATTTCTCCCGCGCACGCAACGCGCACCATGCATCGACTGCC</canonical>
            <polymorphic>GCTCGGTGAGCATCTCGGCAAACGCATGAGCATCGCCAATTGTCAAGTTGGCTCTTTCAATGAGCTTTCGGAAATCCGCGTCTTCCTTTGCCGATACAGGTTGGTAGTCGCTGGCCATGGCGATGTCGTGCTCTGGGAGCTCAATGGGTATGATCGAGGCTTCTGCTTCGAGTTGTGGGAGAGAGAAGTTGCAAAAGTCGGGCATCTGGACAGGGAGATACTGGCAAGAGAGCTGAAATTGTCAAAATTTAGTTGGAATTGGAATGGAGAATTGTCACCTTATACAACTCTCGAATAAAATCATCCTTCTCGTTTGCTGATCCGGCAAGAATCACATATTGACGGTCTCCAATAGTTATGTGGAACTCGGGTGATGGCTAAAAAAAAAATCGAAATCTGACTAGGAATCTGCGGAAATCGTGTATTTTTAAGGTTAAGATCTACGATAAGAGCTCGCCCATGTGCTTATTAGAATCTGTCCACAATTTCATACCTTTTTYGGATTGATCCCATCAATTTCTCTGACTTCTCGAAGGTTGAACCGGTCTTTTTTCTTGAATGTATCATCCTTTTCTCCTTTGACAAAGTAGAGCCGTACAGCGATCGGGTGTTCGATAGTAACTACAACTGTGCAGTATTGTAGACAATCAATTCTTTAAAAAATTAAATTTTACCTGCCAAGCAGAGAAGCGTCTGATTTTTCTTCTTCTTTCCGTCCAATTTATTCACATTCACAATCGCCTGAATCCGTTCATCGTCCTTCTGGAAGAGTTGTCGTTGGATGATCTTCCTAATTGCAGACATTTGCTTCTGAAATAATTTTTAATGATGATTTTAACGATGAATCAGTGTAAAAAAAGACAAAATGAGCGAAACATTCAACAAGAATAAACAATGCAACATCCCGCATCACCAAATGTGTCCAAGATCGTCTCTGTGTCTCTCCCGTTTATGTATATATTTCTCCCGCGCACGCAACGCGCACCATGCATCGACTGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAATCACATATTGACGGTCT</pcr_primer_p1>
		<pcr_primer_p2>GAGAAAAGGATGATACATTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAATCACATATTGACGGTCTCCAATAGTTATGTGGAACTCGGGTGATGGCTAAAAAAAAAATCGAAATCTGACTAGGAATCTGCGGAAATCGTGTATTTTTAAGGTTAAGATCTACGATAAGAGCTCGCCCATGTGCTTATTAGAATCTGTCCACAATTTCATACCTTTTTTGGATTGATCCCATCAATTTCTCTGACTTCTCGAAGGTTGAACCGGTCTTTTTTCTTGAATGTATCATCCTTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>AAGAATCACATATTGACGGTCTCCAATAGTTATGTGGAACTCGGGTGATGGCTAAAAAAAAAATCGAAATCTGACTAGGAATCTGCGGAAATCGTGTATTTTTAAGGTTAAGATCTACGATAAGAGCTCGCCCATGTGCTTATTAGAATCTGTCCACAATTTCATACCTTTTTYGGATTGATCCCATCAATTTCTCTGACTTCTCGAAGGTTGAACCGGTCTTTTTTCTTGAATGTATCATCCTTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2518</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>386235</contig_pos>
        <strand>+</strand>
        <context>TCGCCTGAAT[C/G]CGTTCATCGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTTCTTCTTCTTTCCGTCCAATTTATTCACATTCACAATCGCCTGAAT</left_flank>
        <right_flank>CGTTCATCGTCCTTCTGGAAGAGTTGTCGTTGGATGATCTTCCTAATTGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAGTTGGAATTGGAATGGAGAATTGTCACCTTATACAACTCTCGAATAAAATCATCCTTCTCGTTTGCTGATCCGGCAAGAATCACATATTGACGGTCTCCAATAGTTATGTGGAACTCGGGTGATGGCTAAAAAAAAAATCGAAATCTGACTAGGAATCTGCGGAAATCGTGTATTTTTAAGGTTAAGATCTACGATAAGAGCTCGCCCATGTGCTTATTAGAATCTGTCCACAATTTCATACCTTTTTTGGATTGATCCCATCAATTTCTCTGACTTCTCGAAGGTTGAACCGGTCTTTTTTCTTGAATGTATCATCCTTTTCTCCTTTGACAAAGTAGAGCCGTACAGCGATCGGGTGTTCGATAGTAACTACAACTGTGCAGTATTGTAGACAATCAATTCTTTAAAAAATTAAATTTTACCTGCCAAGCAGAGAAGCGTCTGATTTTTCTTCTTCTTTCCGTCCAATTTATTCACATTCACAATCGCCTGAATCCGTTCATCGTCCTTCTGGAAGAGTTGTCGTTGGATGATCTTCCTAATTGCAGACATTTGCTTCTGAAATAATTTTTAATGATGATTTTAACGATGAATCAGTGTAAAAAAAGACAAAATGAGCGAAACATTCAACAAGAATAAACAATGCAACATCCCGCATCACCAAATGTGTCCAAGATCGTCTCTGTGTCTCTCCCGTTTATGTATATATTTCTCCCGCGCACGCAACGCGCACCATGCATCGACTGCCTTGCGCGTTTCTCGTGCATGCTGGTCGCGACGCAGCACTGAATAAATTGAAATGAATACTGATTTGAAAGTCGATTCACTATGGGAAAAAATTATTCTTGCTTTCAGAGTAACAGAAGAACAATTTATTTTCATTTTTCATGTTTTCAGGTAACTTGTTCAATAGGAAAACGATGTGCGGAAGAGAAAACAATAAAAGATAATCGAAACAAACATGGAATTTCATTTTTCAGATCGAAATATAAGTTG</canonical>
            <polymorphic>TTAGTTGGAATTGGAATGGAGAATTGTCACCTTATACAACTCTCGAATAAAATCATCCTTCTCGTTTGCTGATCCGGCAAGAATCACATATTGACGGTCTCCAATAGTTATGTGGAACTCGGGTGATGGCTAAAAAAAAAATCGAAATCTGACTAGGAATCTGCGGAAATCGTGTATTTTTAAGGTTAAGATCTACGATAAGAGCTCGCCCATGTGCTTATTAGAATCTGTCCACAATTTCATACCTTTTTTGGATTGATCCCATCAATTTCTCTGACTTCTCGAAGGTTGAACCGGTCTTTTTTCTTGAATGTATCATCCTTTTCTCCTTTGACAAAGTAGAGCCGTACAGCGATCGGGTGTTCGATAGTAACTACAACTGTGCAGTATTGTAGACAATCAATTCTTTAAAAAATTAAATTTTACCTGCCAAGCAGAGAAGCGTCTGATTTTTCTTCTTCTTTCCGTCCAATTTATTCACATTCACAATCGCCTGAATSCGTTCATCGTCCTTCTGGAAGAGTTGTCGTTGGATGATCTTCCTAATTGCAGACATTTGCTTCTGAAATAATTTTTAATGATGATTTTAACGATGAATCAGTGTAAAAAAAGACAAAATGAGCGAAACATTCAACAAGAATAAACAATGCAACATCCCGCATCACCAAATGTGTCCAAGATCGTCTCTGTGTCTCTCCCGTTTATGTATATATTTCTCCCGCGCACGCAACGCGCACCATGCATCGACTGCCTTGCGCGTTTCTCGTGCATGCTGGTCGCGACGCAGCACTGAATAAATTGAAATGAATACTGATTTGAAAGTCGATTCACTATGGGAAAAAATTATTCTTGCTTTCAGAGTAACAGAAGAACAATTTATTTTCATTTTTCATGTTTTCAGGTAACTTGTTCAATAGGAAAACGATGTGCGGAAGAGAAAACAATAAAAGATAATCGAAACAAACATGGAATTTCATTTTTCAGATCGAAATATAAGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>272 230 175 99 81 76 67</canonical_bands>
                <polymorphic_bands>371 230 175 81 76 67</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>272 230 175 99 81 76 67</canonical_bands>
                <polymorphic_bands>371 230 175 81 76 67</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGTTCGATAGTAACTACAACTG</pcr_primer_p1>
		<pcr_primer_p2>ACTGATTCATCGTTAAAATCATC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GGTGTTCGATAGTAACTACAACTGTGCAGTATTGTAGACAATCAATTCTTTAAAAAATTAAATTTTACCTGCCAAGCAGAGAAGCGTCTGATTTTTCTTCTTCTTTCCGTCCAATTTATTCACATTCACAATCGCCTGAATCCGTTCATCGTCCTTCTGGAAGAGTTGTCGTTGGATGATCTTCCTAATTGCAGACATTTGCTTCTGAAATAATTTTTAATGATGATTTTAACGATGAATCAGT</canonical_amplicon>
		<polymorphic_amplicon>GGTGTTCGATAGTAACTACAACTGTGCAGTATTGTAGACAATCAATTCTTTAAAAAATTAAATTTTACCTGCCAAGCAGAGAAGCGTCTGATTTTTCTTCTTCTTTCCGTCCAATTTATTCACATTCACAATCGCCTGAATSCGTTCATCGTCCTTCTGGAAGAGTTGTCGTTGGATGATCTTCCTAATTGCAGACATTTGCTTCTGAAATAATTTTTAATGATGATTTTAACGATGAATCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2519</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>389441</contig_pos>
        <strand>+</strand>
        <context>TTACCTTTGA[A/G]TCACTCACCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGTTGCCAAACTGCAAGATTAATGTAAAAAATCACGTTTTACCTTTGA</left_flank>
        <right_flank>TCACTCACCACTGGCATTCTACCACAACCATGAATCATGATCAAGTGGTC</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGCTCTCATGCTTTGGGATTGACGAGGAGTTGGCTTCTTTCTGAAAAATAATAATTTGAGCTTAAAATACGCTTCTAATATTCACCTGTTTCGAACGTTGGTGTATGTCAACGTCTTATACACAGTAGTTGCTCCCATGTAGCCATCTAGCGGAACACGCTTGATGTACCGACCATAGATGAAGGTGCTTTTCAAGCATGAGATCAAATCCTCGAATTCGGAAGCATCAGCAGTGGTAAGAAGATCACTCTTTGCCTCGTTGTAGCAAGCCAAACTGACGTTTCCAGCAACCACTGCTTGCAGTTCGCATTTTGCAAACAGGTAGTAAGCAGTTGTCATGATGGTCTGCTTTCCACGAGTTTCCAGGAATTCCCTGATGAAATCCGACGAGCGACGAGTGATGATTTGTCCCAGCAACTGTCCTGACGGCTTCTTGACCGGATCATGAATGTTGCCAAACTGCAAGATTAATGTAAAAAATCACGTTTTACCTTTGAGTCACTCACCACTGGCATTCTACCACAACCATGAATCATGATCAAGTGGTCACTTGCTTGCTGCAACGCTTTGAAGCGAATATTGCATTCCGAGCAAAACCAATTGAAGAACTGTGGATGATGCTTGGTCTCATGGTATTCCAGAGCAAATTGGGAGACAAAATCTTCGTTGCATCCACAACGAAGCATTGGGAACTGACGAGTCTTGGTCACTGGTCTAACTGGCGCTTCCATTTTGAGTGTTGGCATTTCCGTGACTTTTGGTGGTGTTGGTTCTGGAGGTGAAATATCAAGTGGAGGTGTCAGTGGTAAGAAATCGAGCTGTGGAAGGGATGAGACGTCTGTGCAGAGCTTTCTGTCAAACAAGTTCTCATCTGTATACCAAGGATCATCCTTGGATAATGGTTCTTCTTCCTCTGGTTTGTCCTCCTCATCATCCGTGTCCATATACCGTTTGATTCCCTCGAAAATGTCCAGCAAAACATTCTCGAATGGCTCTGG</canonical>
            <polymorphic>ATGGCTCTCATGCTTTGGGATTGACGAGGAGTTGGCTTCTTTCTGAAAAATAATAATTTGAGCTTAAAATACGCTTCTAATATTCACCTGTTTCGAACGTTGGTGTATGTCAACGTCTTATACACAGTAGTTGCTCCCATGTAGCCATCTAGCGGAACACGCTTGATGTACCGACCATAGATGAAGGTGCTTTTCAAGCATGAGATCAAATCCTCGAATTCGGAAGCATCAGCAGTGGTAAGAAGATCACTCTTTGCCTCGTTGTAGCAAGCCAAACTGACGTTTCCAGCAACCACTGCTTGCAGTTCGCATTTTGCAAACAGGTAGTAAGCAGTTGTCATGATGGTCTGCTTTCCACGAGTTTCCAGGAATTCCCTGATGAAATCCGACGAGCGACGAGTGATGATTTGTCCCAGCAACTGTCCTGACGGCTTCTTGACCGGATCATGAATGTTGCCAAACTGCAAGATTAATGTAAAAAATCACGTTTTACCTTTGARTCACTCACCACTGGCATTCTACCACAACCATGAATCATGATCAAGTGGTCACTTGCTTGCTGCAACGCTTTGAAGCGAATATTGCATTCCGAGCAAAACCAATTGAAGAACTGTGGATGATGCTTGGTCTCATGGTATTCCAGAGCAAATTGGGAGACAAAATCTTCGTTGCATCCACAACGAAGCATTGGGAACTGACGAGTCTTGGTCACTGGTCTAACTGGCGCTTCCATTTTGAGTGTTGGCATTTCCGTGACTTTTGGTGGTGTTGGTTCTGGAGGTGAAATATCAAGTGGAGGTGTCAGTGGTAAGAAATCGAGCTGTGGAAGGGATGAGACGTCTGTGCAGAGCTTTCTGTCAAACAAGTTCTCATCTGTATACCAAGGATCATCCTTGGATAATGGTTCTTCTTCCTCTGGTTTGTCCTCCTCATCATCCGTGTCCATATACCGTTTGATTCCCTCGAAAATGTCCAGCAAAACATTCTCGAATGGCTCTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>499 248 160 48 45</canonical_bands>
                <polymorphic_bands>547 248 160 45</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>499 248 160 48 45</canonical_bands>
                <polymorphic_bands>547 248 160 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGAATTCCCTGATGAAATC</pcr_primer_p1>
		<pcr_primer_p2>CACAGTTCTTCAATTGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGGAATTCCCTGATGAAATCCGACGAGCGACGAGTGATGATTTGTCCCAGCAACTGTCCTGACGGCTTCTTGACCGGATCATGAATGTTGCCAAACTGCAAGATTAATGTAAAAAATCACGTTTTACCTTTGAGTCACTCACCACTGGCATTCTACCACAACCATGAATCATGATCAAGTGGTCACTTGCTTGCTGCAACGCTTTGAAGCGAATATTGCATTCCGAGCAAAACCAATTGAAGAACTGTG</canonical_amplicon>
		<polymorphic_amplicon>AGGAATTCCCTGATGAAATCCGACGAGCGACGAGTGATGATTTGTCCCAGCAACTGTCCTGACGGCTTCTTGACCGGATCATGAATGTTGCCAAACTGCAAGATTAATGTAAAAAATCACGTTTTACCTTTGARTCACTCACCACTGGCATTCTACCACAACCATGAATCATGATCAAGTGGTCACTTGCTTGCTGCAACGCTTTGAAGCGAATATTGCATTCCGAGCAAAACCAATTGAAGAACTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2520</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>408878</contig_pos>
        <strand>+</strand>
        <context>TCCATAGTCC[G/T]CAGATTGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATGCTTCTTGAGAAGGTTCTCGACTGAAGCCAAGTCCTTTCCATAGTCC</left_flank>
        <right_flank>CAGATTGAAGTAGAATCTCAACTTCTCCCAACCAGAACTCGAGGTCCTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTTCCATACGCTTCTTGATTTGATCTTCTCCAACTCCAGCTTCAGCAGCGGATCTCAATAGTTCCTCTCCCTTCAGCTTGACAAGAGAAACTTGTGGCTCGTGAGAAGCCAATTCGGTGTCAATACGACGATGCTTGCGGCGGAGGTTTTGAACTCCAGGAAGATCACGTCCGTAGTCATCAGAAGAAACAAGAAGCTTTTTCTCCTTGATCCATGACTCCTCATCATCAATATCACGGAAGAATTGATGAACATTGAGAGCCTTGCTCAACTTGTCCCGACGATCGGCAGCCATCTTCTTCACTCCGTCGTAACGGTCAGCAATCAACTTTCTTCTCTCAGCAATTTGTTGTCCTTGGAATTGGTCATTTTCAAGGAGGGAGTCAGCTTGCTCGTTCATTTCTCCGACACGATCTTGATGAGCGGTGATGTCAGCTTCAAGAAGGGAATGCTTCTTGAGAAGGTTCTCGACTGAAGCCAAGTCCTTTCCATAGTCCGCAGATTGAAGTAGAATCTCAACTTCTCCCAACCAGAACTCGAGGTCCTTGACAGCAGCCATGAAACTCTTTTGCTTGTTGGCTTCCTTGAGGCGGTAACTCTTCTCGGTGGTGGTCTTGACAAGAAGGTCCCATTGATCGTTGAGGGCCTTCAGACGAGCACTGACAGCAGCTTCACCACCTCCACACTTGGCATTCTCAATAAGGTTGTTTCCAGCTTGGATGATAGCGGCGATTCTGTCCGAGTTGGCGTGGAGCTCTGCTTCGAAGGCTTGTTGCTTCTGGTGTTTCTGTTGGATGTTGGTTGGGTCGCGGTAGTTCTCCTCTTGAGCAATTTGGAACTTCTCGGTCATCCAGTTCTCGATCTCATCAGCATCACGACTGAATTGTTGAAGAGTTTGAGACTCTCCAAGCTTGGATCTCTTCTGAATGAGAGCCTCCTTGAGTCCATTCCATCTATCAAGGATTTGATCACGCTTGCGAGTGACAGCTGGTGAGTCG</canonical>
            <polymorphic>ATCTTCCATACGCTTCTTGATTTGATCTTCTCCAACTCCAGCTTCAGCAGCGGATCTCAATAGTTCCTCTCCCTTCAGCTTGACAAGAGAAACTTGTGGCTCGTGAGAAGCCAATTCGGTGTCAATACGACGATGCTTGCGGCGGAGGTTTTGAACTCCAGGAAGATCACGTCCGTAGTCATCAGAAGAAACAAGAAGCTTTTTCTCCTTGATCCATGACTCCTCATCATCAATATCACGGAAGAATTGATGAACATTGAGAGCCTTGCTCAACTTGTCCCGACGATCGGCAGCCATCTTCTTCACTCCGTCGTAACGGTCAGCAATCAACTTTCTTCTCTCAGCAATTTGTTGTCCTTGGAATTGGTCATTTTCAAGGAGGGAGTCAGCTTGCTCGTTCATTTCTCCGACACGATCTTGATGAGCGGTGATGTCAGCTTCAAGAAGGGAATGCTTCTTGAGAAGGTTCTCGACTGAAGCCAAGTCCTTTCCATAGTCCKCAGATTGAAGTAGAATCTCAACTTCTCCCAACCAGAACTCGAGGTCCTTGACAGCAGCCATGAAACTCTTTTGCTTGTTGGCTTCCTTGAGGCGGTAACTCTTCTCGGTGGTGGTCTTGACAAGAAGGTCCCATTGATCGTTGAGGGCCTTCAGACGAGCACTGACAGCAGCTTCACCACCTCCACACTTGGCATTCTCAATAAGGTTGTTTCCAGCTTGGATGATAGCGGCGATTCTGTCCGAGTTGGCGTGGAGCTCTGCTTCGAAGGCTTGTTGCTTCTGGTGTTTCTGTTGGATGTTGGTTGGGTCGCGGTAGTTCTCCTCTTGAGCAATTTGGAACTTCTCGGTCATCCAGTTCTCGATCTCATCAGCATCACGACTGAATTGTTGAAGAGTTTGAGACTCTCCAAGCTTGGATCTCTTCTGAATGAGAGCCTCCTTGAGTCCATTCCATCTATCAAGGATTTGATCACGCTTGCGAGTGACAGCTGGTGAGTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>409 357 141 93</canonical_bands>
                <polymorphic_bands>450 409 141</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTCTTCTCTCAGCAATTTGT</pcr_primer_p1>
		<pcr_primer_p2>CAACAAGCAAAAGAGTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTCTTCTCTCAGCAATTTGTTGTCCTTGGAATTGGTCATTTTCAAGGAGGGAGTCAGCTTGCTCGTTCATTTCTCCGACACGATCTTGATGAGCGGTGATGTCAGCTTCAAGAAGGGAATGCTTCTTGAGAAGGTTCTCGACTGAAGCCAAGTCCTTTCCATAGTCCGCAGATTGAAGTAGAATCTCAACTTCTCCCAACCAGAACTCGAGGTCCTTGACAGCAGCCATGAAACTCTTTTGCTTGTTG</canonical_amplicon>
		<polymorphic_amplicon>CTTTCTTCTCTCAGCAATTTGTTGTCCTTGGAATTGGTCATTTTCAAGGAGGGAGTCAGCTTGCTCGTTCATTTCTCCGACACGATCTTGATGAGCGGTGATGTCAGCTTCAAGAAGGGAATGCTTCTTGAGAAGGTTCTCGACTGAAGCCAAGTCCTTTCCATAGTCCKCAGATTGAAGTAGAATCTCAACTTCTCCCAACCAGAACTCGAGGTCCTTGACAGCAGCCATGAAACTCTTTTGCTTGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2521</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>432290</contig_pos>
        <strand>+</strand>
        <context>CAATCAGGGC[C/T]CCTTGAAGTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGACGTTTTGCCCGGAAATGCCAAAAAATCCTGTTCTAACAATCAGGGC</left_flank>
        <right_flank>CCTTGAAGTGAACTCATGCTACAGTAATCTGAATCAGTTGAACAAAAACT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTGCAAGTTGGAAGAGGAAATGAAATCGGTGACGCAGATCCATCTGGAAACGTTTGGAGTATAGTTGGAGTAGTTGGATACCAGTAAATGAGTCATTGGTGAAAATTTCCAGAGCGCACCGATTCAACATAATCTTGGGAAAGTTCATAGCTTTTGAAGCTGTATTATAACTTGGAACGCACGTGAGGTCCAAACTTTAAAAATTTAATTCTCGAACTAAAAATACCAAATTCTGTTACTGATTTCATTTGTCAAGAATACAGAAATTATCTTGAGAATCAAACTTTTAAGCTGACATCTAAACCACATTTATGTGACTAGATCAGGAACATGGAAAAATTCCAAGAACTTTTTCGATTGGTATTCAGAGAAAGTTTACTGATTTTATTTTGTTTACCAACCCGAAAACTTTTCTAAAAATTTTTAAAAACTTTCAAAAGTTGGTATCTAGACGTTTTGCCCGGAAATGCCAAAAAATCCTGTTCTAACAATCAGGGCCCCTTGAAGTGAACTCATGCTACAGTAATCTGAATCAGTTGAACAAAAACTGTTCACTTGATCTTTTTATGAGAAATGATCTAACCGATCTTGTTCTCTTCTGCATTTCCCCATTACAAGACATTGATGGCCAGTTCAACGATGAGATTGAATGATGGGAATGTAGCTTGAGGGCTACAGTATGCCCGCTTGAAAAGGAAATCTGAGTGAAGATGAAGAAGAAGAAGGATTTCTTTGAAGCGATACCGGTCACTATTTACAATTCGTTTACAAAAATTCCACCGACTTGAATTCCGTCTTATCTTGGTCACAAACACATTGTTTACTTTCTTTACATTTGCAACACTTTCTTCTTGCCCAAACTCGCAATGAGATGTAAGGACTCATCGTACTCGAACAGTTCCGCTCTTCTATTCTAGAAATGTTTCAGTACGCGCGCTACTTAATTTTTGAGACTGACGTCTGTTGGCATTTATGTATTCTGAATGATTCCTAATCTAT</canonical>
            <polymorphic>CTTGCAAGTTGGAAGAGGAAATGAAATCGGTGACGCAGATCCATCTGGAAACGTTTGGAGTATAGTTGGAGTAGTTGGATACCAGTAAATGAGTCATTGGTGAAAATTTCCAGAGCGCACCGATTCAACATAATCTTGGGAAAGTTCATAGCTTTTGAAGCTGTATTATAACTTGGAACGCACGTGAGGTCCAAACTTTAAAAATTTAATTCTCGAACTAAAAATACCAAATTCTGTTACTGATTTCATTTGTCAAGAATACAGAAATTATCTTGAGAATCAAACTTTTAAGCTGACATCTAAACCACATTTATGTGACTAGATCAGGAACATGGAAAAATTCCAAGAACTTTTTCGATTGGTATTCAGAGAAAGTTTACTGATTTTATTTTGTTTACCAACCCGAAAACTTTTCTAAAAATTTTTAAAAACTTTCAAAAGTTGGTATCTAGACGTTTTGCCCGGAAATGCCAAAAAATCCTGTTCTAACAATCAGGGCYCCTTGAAGTGAACTCATGCTACAGTAATCTGAATCAGTTGAACAAAAACTGTTCACTTGATCTTTTTATGAGAAATGATCTAACCGATCTTGTTCTCTTCTGCATTTCCCCATTACAAGACATTGATGGCCAGTTCAACGATGAGATTGAATGATGGGAATGTAGCTTGAGGGCTACAGTATGCCCGCTTGAAAAGGAAATCTGAGTGAAGATGAAGAAGAAGAAGGATTTCTTTGAAGCGATACCGGTCACTATTTACAATTCGTTTACAAAAATTCCACCGACTTGAATTCCGTCTTATCTTGGTCACAAACACATTGTTTACTTTCTTTACATTTGCAACACTTTCTTCTTGCCCAAACTCGCAATGAGATGTAAGGACTCATCGTACTCGAACAGTTCCGCTCTTCTATTCTAGAAATGTTTCAGTACGCGCGCTACTTAATTTTTGAGACTGACGTCTGTTGGCATTTATGTATTCTGAATGATTCCTAATCTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGGCCC</site>
                <isoschizomers>
                    <enzyme>ApaI</enzyme>
                    <enzyme>Bsp120I</enzyme>
                    <enzyme>PspOMI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>504 308 188</canonical_bands>
                <polymorphic_bands>812 188</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>501 499</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>498 371 131</canonical_bands>
                <polymorphic_bands>629 371</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>327 206 151 132 131 36 9 8</canonical_bands>
                <polymorphic_bands>337 327 151 132 36 9 8</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTAGATCAGGAACATGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGATCAAGTGAACAGTTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACTAGATCAGGAACATGGAAAAATTCCAAGAACTTTTTCGATTGGTATTCAGAGAAAGTTTACTGATTTTATTTTGTTTACCAACCCGAAAACTTTTCTAAAAATTTTTAAAAACTTTCAAAAGTTGGTATCTAGACGTTTTGCCCGGAAATGCCAAAAAATCCTGTTCTAACAATCAGGGCCCCTTGAAGTGAACTCATGCTACAGTAATCTGAATCAGTTGAACAAAAACTGTTCACTTGATCTTT</canonical_amplicon>
		<polymorphic_amplicon>ACTAGATCAGGAACATGGAAAAATTCCAAGAACTTTTTCGATTGGTATTCAGAGAAAGTTTACTGATTTTATTTTGTTTACCAACCCGAAAACTTTTCTAAAAATTTTTAAAAACTTTCAAAAGTTGGTATCTAGACGTTTTGCCCGGAAATGCCAAAAAATCCTGTTCTAACAATCAGGGCYCCTTGAAGTGAACTCATGCTACAGTAATCTGAATCAGTTGAACAAAAACTGTTCACTTGATCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2522</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>432375</contig_pos>
        <strand>+</strand>
        <context>ATGATCTAAC[C/T]GATCTTGTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGTTGAACAAAAACTGTTCACTTGATCTTTTTATGAGAAATGATCTAAC</left_flank>
        <right_flank>GATCTTGTTCTCTTCTGCATTTCCCCATTACAAGACATTGATGGCCAGTT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATGAGTCATTGGTGAAAATTTCCAGAGCGCACCGATTCAACATAATCTTGGGAAAGTTCATAGCTTTTGAAGCTGTATTATAACTTGGAACGCACGTGAGGTCCAAACTTTAAAAATTTAATTCTCGAACTAAAAATACCAAATTCTGTTACTGATTTCATTTGTCAAGAATACAGAAATTATCTTGAGAATCAAACTTTTAAGCTGACATCTAAACCACATTTATGTGACTAGATCAGGAACATGGAAAAATTCCAAGAACTTTTTCGATTGGTATTCAGAGAAAGTTTACTGATTTTATTTTGTTTACCAACCCGAAAACTTTTCTAAAAATTTTTAAAAACTTTCAAAAGTTGGTATCTAGACGTTTTGCCCGGAAATGCCAAAAAATCCTGTTCTAACAATCAGGGCCCCTTGAAGTGAACTCATGCTACAGTAATCTGAATCAGTTGAACAAAAACTGTTCACTTGATCTTTTTATGAGAAATGATCTAACCGATCTTGTTCTCTTCTGCATTTCCCCATTACAAGACATTGATGGCCAGTTCAACGATGAGATTGAATGATGGGAATGTAGCTTGAGGGCTACAGTATGCCCGCTTGAAAAGGAAATCTGAGTGAAGATGAAGAAGAAGAAGGATTTCTTTGAAGCGATACCGGTCACTATTTACAATTCGTTTACAAAAATTCCACCGACTTGAATTCCGTCTTATCTTGGTCACAAACACATTGTTTACTTTCTTTACATTTGCAACACTTTCTTCTTGCCCAAACTCGCAATGAGATGTAAGGACTCATCGTACTCGAACAGTTCCGCTCTTCTATTCTAGAAATGTTTCAGTACGCGCGCTACTTAATTTTTGAGACTGACGTCTGTTGGCATTTATGTATTCTGAATGATTCCTAATCTATCGATCTATGTTTCTTCTCCATTTCTAAAATTGATATTTGTGCTACCATAATCCTCATGTATCTAGAATGATCCCATAGAAGCTTC</canonical>
            <polymorphic>TAAATGAGTCATTGGTGAAAATTTCCAGAGCGCACCGATTCAACATAATCTTGGGAAAGTTCATAGCTTTTGAAGCTGTATTATAACTTGGAACGCACGTGAGGTCCAAACTTTAAAAATTTAATTCTCGAACTAAAAATACCAAATTCTGTTACTGATTTCATTTGTCAAGAATACAGAAATTATCTTGAGAATCAAACTTTTAAGCTGACATCTAAACCACATTTATGTGACTAGATCAGGAACATGGAAAAATTCCAAGAACTTTTTCGATTGGTATTCAGAGAAAGTTTACTGATTTTATTTTGTTTACCAACCCGAAAACTTTTCTAAAAATTTTTAAAAACTTTCAAAAGTTGGTATCTAGACGTTTTGCCCGGAAATGCCAAAAAATCCTGTTCTAACAATCAGGGCCCCTTGAAGTGAACTCATGCTACAGTAATCTGAATCAGTTGAACAAAAACTGTTCACTTGATCTTTTTATGAGAAATGATCTAACYGATCTTGTTCTCTTCTGCATTTCCCCATTACAAGACATTGATGGCCAGTTCAACGATGAGATTGAATGATGGGAATGTAGCTTGAGGGCTACAGTATGCCCGCTTGAAAAGGAAATCTGAGTGAAGATGAAGAAGAAGAAGGATTTCTTTGAAGCGATACCGGTCACTATTTACAATTCGTTTACAAAAATTCCACCGACTTGAATTCCGTCTTATCTTGGTCACAAACACATTGTTTACTTTCTTTACATTTGCAACACTTTCTTCTTGCCCAAACTCGCAATGAGATGTAAGGACTCATCGTACTCGAACAGTTCCGCTCTTCTATTCTAGAAATGTTTCAGTACGCGCGCTACTTAATTTTTGAGACTGACGTCTGTTGGCATTTATGTATTCTGAATGATTCCTAATCTATCGATCTATGTTTCTTCTCCATTTCTAAAATTGATATTTGTGCTACCATAATCCTCATGTATCTAGAATGATCCCATAGAAGCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCTGAATCAGTTGAACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTGTAAACGAATTGTAAATAGTGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATCTGAATCAGTTGAACAAAAACTGTTCACTTGATCTTTTTATGAGAAATGATCTAACCGATCTTGTTCTCTTCTGCATTTCCCCATTACAAGACATTGATGGCCAGTTCAACGATGAGATTGAATGATGGGAATGTAGCTTGAGGGCTACAGTATGCCCGCTTGAAAAGGAAATCTGAGTGAAGATGAAGAAGAAGAAGGATTTCTTTGAAGCGATACCGGTCACTATTTACAATTCGTTTACAAA</canonical_amplicon>
		<polymorphic_amplicon>AATCTGAATCAGTTGAACAAAAACTGTTCACTTGATCTTTTTATGAGAAATGATCTAACYGATCTTGTTCTCTTCTGCATTTCCCCATTACAAGACATTGATGGCCAGTTCAACGATGAGATTGAATGATGGGAATGTAGCTTGAGGGCTACAGTATGCCCGCTTGAAAAGGAAATCTGAGTGAAGATGAAGAAGAAGAAGGATTTCTTTGAAGCGATACCGGTCACTATTTACAATTCGTTTACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2523</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>434250</contig_pos>
        <strand>+</strand>
        <context>GTATTATTGA[A/C]TACTAACACG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATCCTAGGATGAGTGTTTGCAGGCAGTATACTGTAATAGGTATTATTGA</left_flank>
        <right_flank>TACTAACACGAGAACCTAAACACCTTGTAAACCCAGATTTTTTGAAATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGAAATGTTTGCGCGGCGCGTACTTCCGCTTGATTAGTAGTTTCAATGACAAACGATCAAGAGGAGGCATTCCCCATTTTTCAATAACAAAAGTCTTGCACTTAGGTCGGAGGGACGGAAAAACCTAATTAATTTATGTGGAGCATCATGATGTGGATCACCATTTCAGCACATGATCTGCTGACTCGAGTCAAATATTAGAAATTCAGTGGTCCCAACGGCCTGATCTACTTTTTTCTTTTTTCAAGATCTTCTTTATAGGTGACGTGACTTGCTTCAAATGTCGCATGTCTGGGGTCGAAGGTCCCAAAGTTTGAAATAAATGCGAAGTGTCATTATACGATTTCACTTACATTTAGCCAAGTGACAAAAAGCTGAAGCAAAGAGATATTTACCTCCTGCAAAGATAGATTTTGAACGACGTTAAAAATAATTTCAAAGAGCTGAAATCCTAGGATGAGTGTTTGCAGGCAGTATACTGTAATAGGTATTATTGACTACTAACACGAGAACCTAAACACCTTGTAAACCCAGATTTTTTGAAATTTTCAGAACATGAAATTTCAGAACAGATTAGCCTATCTAGACACTTCTGCAAATTTTGTAAGCCGCTGCCAGTTTCAGCCGGGTTATATCAATTTCAGTACCGAAATTCGTGTTTCAACGCAAAAATAGTGATTTTCAATGCCGATTTGCTTAGTTTCTAGGTCGTTTCGGAACACGAAATGTTTTGTACCTTACTGAGAACTAAATAAAAATTCATATTTCAAACATTTTTTTCGAAATTTTTTTCGAATAAATCCAAGAAATAGAATAAATTCGAAAATTTGAAAAAAATAGAAAATATTTAATGTCCTAAAATGTCCTAGAAGTTGTGGAAAGTGTCTCAAAATTCCTAGTTTTGTACCGAACACGCGATCAACGGTATTGAAACGGATGGCCGGTGGGTTTATAAGTTTGTCGAACAAACTTTGAAGCTTTTCAAAGTGTCTAGTTTT</canonical>
            <polymorphic>AAGGAAATGTTTGCGCGGCGCGTACTTCCGCTTGATTAGTAGTTTCAATGACAAACGATCAAGAGGAGGCATTCCCCATTTTTCAATAACAAAAGTCTTGCACTTAGGTCGGAGGGACGGAAAAACCTAATTAATTTATGTGGAGCATCATGATGTGGATCACCATTTCAGCACATGATCTGCTGACTCGAGTCAAATATTAGAAATTCAGTGGTCCCAACGGCCTGATCTACTTTTTTCTTTTTTCAAGATCTTCTTTATAGGTGACGTGACTTGCTTCAAATGTCGCATGTCTGGGGTCGAAGGTCCCAAAGTTTGAAATAAATGCGAAGTGTCATTATACGATTTCACTTACATTTAGCCAAGTGACAAAAAGCTGAAGCAAAGAGATATTTACCTCCTGCAAAGATAGATTTTGAACGACGTTAAAAATAATTTCAAAGAGCTGAAATCCTAGGATGAGTGTTTGCAGGCAGTATACTGTAATAGGTATTATTGAMTACTAACACGAGAACCTAAACACCTTGTAAACCCAGATTTTTTGAAATTTTCAGAACATGAAATTTCAGAACAGATTAGCCTATCTAGACACTTCTGCAAATTTTGTAAGCCGCTGCCAGTTTCAGCCGGGTTATATCAATTTCAGTACCGAAATTCGTGTTTCAACGCAAAAATAGTGATTTTCAATGCCGATTTGCTTAGTTTCTAGGTCGTTTCGGAACACGAAATGTTTTGTACCTTACTGAGAACTAAATAAAAATTCATATTTCAAACATTTTTTTCGAAATTTTTTTCGAATAAATCCAAGAAATAGAATAAATTCGAAAATTTGAAAAAAATAGAAAATATTTAATGTCCTAAAATGTCCTAGAAGTTGTGGAAAGTGTCTCAAAATTCCTAGTTTTGTACCGAACACGCGATCAACGGTATTGAAACGGATGGCCGGTGGGTTTATAAGTTTGTCGAACAAACTTTGAAGCTTTTCAAAGTGTCTAGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGCTGAAGCAAAGAGATATT</pcr_primer_p1>
		<pcr_primer_p2>CTTACAAAATTTGCAGAAGTGTC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AAAAGCTGAAGCAAAGAGATATTTACCTCCTGCAAAGATAGATTTTGAACGACGTTAAAAATAATTTCAAAGAGCTGAAATCCTAGGATGAGTGTTTGCAGGCAGTATACTGTAATAGGTATTATTGACTACTAACACGAGAACCTAAACACCTTGTAAACCCAGATTTTTTGAAATTTTCAGAACATGAAATTTCAGAACAGATTAGCCTATCTAGACACTTCTGCAAATTTTGTAAG</canonical_amplicon>
		<polymorphic_amplicon>AAAAGCTGAAGCAAAGAGATATTTACCTCCTGCAAAGATAGATTTTGAACGACGTTAAAAATAATTTCAAAGAGCTGAAATCCTAGGATGAGTGTTTGCAGGCAGTATACTGTAATAGGTATTATTGAMTACTAACACGAGAACCTAAACACCTTGTAAACCCAGATTTTTTGAAATTTTCAGAACATGAAATTTCAGAACAGATTAGCCTATCTAGACACTTCTGCAAATTTTGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2524</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>464021</contig_pos>
        <strand></strand>
        <context>cgtctttgac[T/A]taccgtattc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAAAAAATTTCGCTCAACACCCAAGGAAATTTTCCGCGCGCGTCTTTGAC</left_flank>
        <right_flank>TACCGTATTCCAGAAAATTCTAATTTCAGAATGCAATATCGGAAAATTCC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATGGTGAGTTACACAGAACTGTTGGGAGATGTGTTGATGAAGGTTTGCTCAAATGATGACCATTACATTAAATGGAACAATAGGAGAAAATGTTTTTGAAATGAGGCGGGATGGGCGGGAAATTGCCGGTTAAAAAGTGTGCAAAAAGAGGGAGAGGGAATTGGAACATCTGGAGCTAGGGGCATGGTACAGGCCCACCTGTTAGTTTTAAAAGGGCACGAACTCAAAAAAGTGCAAGTTTTTGTGTGGTTTAATTAGCGTGTCAGAGATGTTCAAAATGGCCAATTTAGAATTTTTGGGTACGGCGAAAACTCCGGATTTCAAAATTCGGATTTCGGAGTCTTTGAGATATTCCGATTTATAAAAATTTCGTAACTTCCAATCACAAAATCGCGAAAAATTGGTGAAAGGATTGAATAGCCGATTTGGAGGATGCAAAAAATTGTCAAAAAAATTTCGCTCAACACCCAAGGAAATTTTCCGCGCGCGTCTTTGACTTACCGTATTCCAGAAAATTCTAATTTCAGAATGCAATATCGGAAAATTCCGAAAAAATATTTTGGACCTTTAGAATTCTCATTTTTGGTCCGAACATGGCTATTAATGCATTCCATTTTCAAAATTCAAATTTTGGTTTCAAAAGTGATTAAGCGCGTGACTTTCAGAAAAATGGATCCGAGAAACGTTATAAAGGTACAAAGCTACAAGGAAACGGATTTGGAAGCTGTACCATGCAACCTTGAGACACGGCCAAAGTCTTCTCTACTTCTCTGTGTATCTTAGAAAAATGAATATTATGTTTTTCATAACATTTTCACATTTGTCTTTGTGCCATGCGGTGTAGAAGATTTGAAATTTTAGTAAATGTCTTGAATCAAAGAATGTACCACTTTCAGGGTACTGTATACTAACACTGGTACTAACATTCATCGTTTCACGACAAAATTCATCATTTCGAAAAATGGACAACAATTTGAGAGATGTATAGTTCAGAACAT</canonical>
            <polymorphic>TAATGGTGAGTTACACAGAACTGTTGGGAGATGTGTTGATGAAGGTTTGCTCAAATGATGACCATTACATTAAATGGAACAATAGGAGAAAATGTTTTTGAAATGAGGCGGGATGGGCGGGAAATTGCCGGTTAAAAAGTGTGCAAAAAGAGGGAGAGGGAATTGGAACATCTGGAGCTAGGGGCATGGTACAGGCCCACCTGTTAGTTTTAAAAGGGCACGAACTCAAAAAAGTGCAAGTTTTTGTGTGGTTTAATTAGCGTGTCAGAGATGTTCAAAATGGCCAATTTAGAATTTTTGGGTACGGCGAAAACTCCGGATTTCAAAATTCGGATTTCGGAGTCTTTGAGATATTCCGATTTATAAAAATTTCGTAACTTCCAATCACAAAATCGCGAAAAATTGGTGAAAGGATTGAATAGCCGATTTGGAGGATGCAAAAAATTGTCAAAAAAATTTCGCTCAACACCCAAGGAAATTTTCCGCGCGCGTCTTTGACWTACCGTATTCCAGAAAATTCTAATTTCAGAATGCAATATCGGAAAATTCCGAAAAAATATTTTGGACCTTTAGAATTCTCATTTTTGGTCCGAACATGGCTATTAATGCATTCCATTTTCAAAATTCAAATTTTGGTTTCAAAAGTGATTAAGCGCGTGACTTTCAGAAAAATGGATCCGAGAAACGTTATAAAGGTACAAAGCTACAAGGAAACGGATTTGGAAGCTGTACCATGCAACCTTGAGACACGGCCAAAGTCTTCTCTACTTCTCTGTGTATCTTAGAAAAATGAATATTATGTTTTTCATAACATTTTCACATTTGTCTTTGTGCCATGCGGTGTAGAAGATTTGAAATTTTAGTAAATGTCTTGAATCAAAGAATGTACCACTTTCAGGGTACTGTATACTAACACTGGTACTAACATTCATCGTTTCACGACAAAATTCATCATTTCGAAAAATGGACAACAATTTGAGAGATGTATAGTTCAGAACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTGGTTTAATTAGCGTGTC</pcr_primer_p1>
		<pcr_primer_p2>TGAGAATTCTAAAGGTCCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>336</pcr_amplicon_size>
		<canonical_amplicon>GTGTGGTTTAATTAGCGTGTCAGAGATGTTCAAAATGGCCAATTTAGAATTTTTGGGTACGGCGAAAACTCCGGATTTCAAAATTCGGATTTCGGAGTCTTTGAGATATTCCGATTTATAAAAATTTCGTAACTTCCAATCACAAAATCGCGAAAAATTGGTGAAAGGATTGAATAGCCGATTTGGAGGATGCAAAAAATTGTCAAAAAAATTTCGCTCAACACCCAAGGAAATTTTCCGCGCGCGTCTTTGACTTACCGTATTCCAGAAAATTCTAATTTCAGAATGCAATATCGGAAAATTCCGAAAAAATATTTTGGACCTTTAGAATTCTCA</canonical_amplicon>
		<polymorphic_amplicon>GTGTGGTTTAATTAGCGTGTCAGAGATGTTCAAAATGGCCAATTTAGAATTTTTGGGTACGGCGAAAACTCCGGATTTCAAAATTCGGATTTCGGAGTCTTTGAGATATTCCGATTTATAAAAATTTCGTAACTTCCAATCACAAAATCGCGAAAAATTGGTGAAAGGATTGAATAGCCGATTTGGAGGATGCAAAAAATTGTCAAAAAAATTTCGCTCAACACCCAAGGAAATTTTCCGCGCGCGTCTTTGACWTACCGTATTCCAGAAAATTCTAATTTCAGAATGCAATATCGGAAAATTCCGAAAAAATATTTTGGACCTTTAGAATTCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2525</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>464273</contig_pos>
        <strand>+</strand>
        <context>TTGAGACACG[A/G]CCAAAGTCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCTACAAGGAAACGGATTTGGAAGCTGTACCATGCAACCTTGAGACACG</left_flank>
        <right_flank>CCAAAGTCTTCTCTACTTCTCTGTGTATCTTAGAAAAATGAATATTATGT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAATTAGCGTGTCAGAGATGTTCAAAATGGCCAATTTAGAATTTTTGGGTACGGCGAAAACTCCGGATTTCAAAATTCGGATTTCGGAGTCTTTGAGATATTCCGATTTATAAAAATTTCGTAACTTCCAATCACAAAATCGCGAAAAATTGGTGAAAGGATTGAATAGCCGATTTGGAGGATGCAAAAAATTGTCAAAAAAATTTCGCTCAACACCCAAGGAAATTTTCCGCGCGCGTCTTTGACTTACCGTATTCCAGAAAATTCTAATTTCAGAATGCAATATCGGAAAATTCCGAAAAAATATTTTGGACCTTTAGAATTCTCATTTTTGGTCCGAACATGGCTATTAATGCATTCCATTTTCAAAATTCAAATTTTGGTTTCAAAAGTGATTAAGCGCGTGACTTTCAGAAAAATGGATCCGAGAAACGTTATAAAGGTACAAAGCTACAAGGAAACGGATTTGGAAGCTGTACCATGCAACCTTGAGACACGGCCAAAGTCTTCTCTACTTCTCTGTGTATCTTAGAAAAATGAATATTATGTTTTTCATAACATTTTCACATTTGTCTTTGTGCCATGCGGTGTAGAAGATTTGAAATTTTAGTAAATGTCTTGAATCAAAGAATGTACCACTTTCAGGGTACTGTATACTAACACTGGTACTAACATTCATCGTTTCACGACAAAATTCATCATTTCGAAAAATGGACAACAATTTGAGAGATGTATAGTTCAGAACATTGTGTGCCTGGTACGAGGTGTGACCTCAAATGTTATTGCCAAATTCAAAAAAACGGACGAGAGAGCACTGAAATTTAGGAAAAGATTAATTGATGCACTTTTGTATTAATTGCCTGAGAACTAAATGGATTTGAAAATATGGGCATAGAGAGTTGTGGAGATGGAGAGTTTCAGAAAACCACAATTTTGTAATGAGGTTGGATGGGCGTGAAATCGCCGGTTGAAATATATTCAGAAACATAAAAGGGCATC</canonical>
            <polymorphic>TTAATTAGCGTGTCAGAGATGTTCAAAATGGCCAATTTAGAATTTTTGGGTACGGCGAAAACTCCGGATTTCAAAATTCGGATTTCGGAGTCTTTGAGATATTCCGATTTATAAAAATTTCGTAACTTCCAATCACAAAATCGCGAAAAATTGGTGAAAGGATTGAATAGCCGATTTGGAGGATGCAAAAAATTGTCAAAAAAATTTCGCTCAACACCCAAGGAAATTTTCCGCGCGCGTCTTTGACTTACCGTATTCCAGAAAATTCTAATTTCAGAATGCAATATCGGAAAATTCCGAAAAAATATTTTGGACCTTTAGAATTCTCATTTTTGGTCCGAACATGGCTATTAATGCATTCCATTTTCAAAATTCAAATTTTGGTTTCAAAAGTGATTAAGCGCGTGACTTTCAGAAAAATGGATCCGAGAAACGTTATAAAGGTACAAAGCTACAAGGAAACGGATTTGGAAGCTGTACCATGCAACCTTGAGACACGRCCAAAGTCTTCTCTACTTCTCTGTGTATCTTAGAAAAATGAATATTATGTTTTTCATAACATTTTCACATTTGTCTTTGTGCCATGCGGTGTAGAAGATTTGAAATTTTAGTAAATGTCTTGAATCAAAGAATGTACCACTTTCAGGGTACTGTATACTAACACTGGTACTAACATTCATCGTTTCACGACAAAATTCATCATTTCGAAAAATGGACAACAATTTGAGAGATGTATAGTTCAGAACATTGTGTGCCTGGTACGAGGTGTGACCTCAAATGTTATTGCCAAATTCAAAAAAACGGACGAGAGAGCACTGAAATTTAGGAAAAGATTAATTGATGCACTTTTGTATTAATTGCCTGAGAACTAAATGGATTTGAAAATATGGGCATAGAGAGTTGTGGAGATGGAGAGTTTCAGAAAACCACAATTTTGTAATGAGGTTGGATGGGCGTGAAATCGCCGGTTGAAATATATTCAGAAACATAAAAGGGCATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 469 31</canonical_bands>
                <polymorphic_bands>969 31</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 469 29</canonical_bands>
                <polymorphic_bands>971 29</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>500 177 139 104 31 26 23</canonical_bands>
                <polymorphic_bands>526 177 139 104 31 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGTACAAAGCTACAAGGAAAC</pcr_primer_p1>
		<pcr_primer_p2>GTGAAACGATGAATGTTAGTACC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGGTACAAAGCTACAAGGAAACGGATTTGGAAGCTGTACCATGCAACCTTGAGACACGGCCAAAGTCTTCTCTACTTCTCTGTGTATCTTAGAAAAATGAATATTATGTTTTTCATAACATTTTCACATTTGTCTTTGTGCCATGCGGTGTAGAAGATTTGAAATTTTAGTAAATGTCTTGAATCAAAGAATGTACCACTTTCAGGGTACTGTATACTAACACTGGTACTAACATTCATCGTTTCAC</canonical_amplicon>
		<polymorphic_amplicon>AAGGTACAAAGCTACAAGGAAACGGATTTGGAAGCTGTACCATGCAACCTTGAGACACGRCCAAAGTCTTCTCTACTTCTCTGTGTATCTTAGAAAAATGAATATTATGTTTTTCATAACATTTTCACATTTGTCTTTGTGCCATGCGGTGTAGAAGATTTGAAATTTTAGTAAATGTCTTGAATCAAAGAATGTACCACTTTCAGGGTACTGTATACTAACACTGGTACTAACATTCATCGTTTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2526</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>466441</contig_pos>
        <strand>+</strand>
        <context>CATTTAAAAT[C/T]TCAAAAGCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAAAACTTTGTCAGAAATTATCTTTCAATCACTTATCTGCATTTAAAAT</left_flank>
        <right_flank>TCAAAAGCAGATAATTTGACTTGAAAAGCTCTCAGTTTCAAATATGACGT</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTCTTTTCTGCATTTTCAGTAGAACACTTTGTCTGATATCTTTGAAAGTAAAATCAAAAGTTAGTATGATTCATTAAGGATGATTCAACGTTCAATGAATAAACATTATGTACCGTAAAACCTATAATAATATGGCCTCCTTTAAACAAATTTTTCTCGGTTCCCTTCAAAGATATAAAAAAGTTGTCAGCAGATATATTGTTTATCATAATATTATAAGTGTTTTGTTAGTTGACACATTTTCGATATCTTGCAGAGGAATTAAAATGATGCTCAAACTTGGAGCTTTTCTATCACATGCTGTACGGTATTTCTTAGAAACGATCTTACAATCTTAGATTGTTATCTCAAGTGCCTAATGCTCAACAATTTAGCCATATATTTCCTGAATTCATTTTTGTTTCCATTTCTAATGATCTGCTAACGATCTTAGTTACGAATTCCGAATGGAAAACTTTGTCAGAAATTATCTTTCAATCACTTATCTGCATTTAAAATTTCAAAAGCAGATAATTTGACTTGAAAAGCTCTCAGTTTCAAATATGACGTTTTTAGAATCTCAGAATGTATAGGTTGTCATGTAGAGTTAGGTTAGGATCGCATTTCATTTCTCAAATTCCATTGAGTTCTATGGCAGCCTAAATATTTTCAGGTTAGTGTTCTTGTCTCTTCTTATCTGAAATGGATCTGTGAATATAACTTTTTGTATCTAAACTTTTGATTTTCAAGCTATTTCCTGTGTAACCCTTCTGTCAAAAATGCACTCCCACAAGCCAAATGAATCCTATTCATAGTTTTTCAGAAATCCATCGAGTGGCAGTAACCAACTATCTGCGCTTATCTCATTACTACGCTCTCGTGACATAATTACTGTTTGCTCTCTTTTTGGTGGTTTAATCGACTGATATTCTTCATTATGCAGGACTGTTGGCACAGAAGACAAAAGAGAGACAGAGAGTGATTGTCTGCTCTCATCCTATCGTGTTCTTATCTGATCTT</canonical>
            <polymorphic>AGTCTTTTCTGCATTTTCAGTAGAACACTTTGTCTGATATCTTTGAAAGTAAAATCAAAAGTTAGTATGATTCATTAAGGATGATTCAACGTTCAATGAATAAACATTATGTACCGTAAAACCTATAATAATATGGCCTCCTTTAAACAAATTTTTCTCGGTTCCCTTCAAAGATATAAAAAAGTTGTCAGCAGATATATTGTTTATCATAATATTATAAGTGTTTTGTTAGTTGACACATTTTCGATATCTTGCAGAGGAATTAAAATGATGCTCAAACTTGGAGCTTTTCTATCACATGCTGTACGGTATTTCTTAGAAACGATCTTACAATCTTAGATTGTTATCTCAAGTGCCTAATGCTCAACAATTTAGCCATATATTTCCTGAATTCATTTTTGTTTCCATTTCTAATGATCTGCTAACGATCTTAGTTACGAATTCCGAATGGAAAACTTTGTCAGAAATTATCTTTCAATCACTTATCTGCATTTAAAATYTCAAAAGCAGATAATTTGACTTGAAAAGCTCTCAGTTTCAAATATGACGTTTTTAGAATCTCAGAATGTATAGGTTGTCATGTAGAGTTAGGTTAGGATCGCATTTCATTTCTCAAATTCCATTGAGTTCTATGGCAGCCTAAATATTTTCAGGTTAGTGTTCTTGTCTCTTCTTATCTGAAATGGATCTGTGAATATAACTTTTTGTATCTAAACTTTTGATTTTCAAGCTATTTCCTGTGTAACCCTTCTGTCAAAAATGCACTCCCACAAGCCAAATGAATCCTATTCATAGTTTTTCAGAAATCCATCGAGTGGCAGTAACCAACTATCTGCGCTTATCTCATTACTACGCTCTCGTGACATAATTACTGTTTGCTCTCTTTTTGGTGGTTTAATCGACTGATATTCTTCATTATGCAGGACTGTTGGCACAGAAGACAAAAGAGAGACAGAGAGTGATTGTCTGCTCTCATCCTATCGTGTTCTTATCTGATCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>385 240 149 119 57 50</canonical_bands>
                <polymorphic_bands>385 240 176 149 50</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>251 149 134 111 108 103 50 31 26 21 16</canonical_bands>
                <polymorphic_bands>251 149 134 111 108 103 50 47 26 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTTTCCATTTCTAATGATCTG</pcr_primer_p1>
		<pcr_primer_p2>AATATTTAGGCTGCCATAGAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGTTTCCATTTCTAATGATCTGCTAACGATCTTAGTTACGAATTCCGAATGGAAAACTTTGTCAGAAATTATCTTTCAATCACTTATCTGCATTTAAAATTTCAAAAGCAGATAATTTGACTTGAAAAGCTCTCAGTTTCAAATATGACGTTTTTAGAATCTCAGAATGTATAGGTTGTCATGTAGAGTTAGGTTAGGATCGCATTTCATTTCTCAAATTCCATTGAGTTCTATGGCAGCCTAAATATT</canonical_amplicon>
		<polymorphic_amplicon>TTGTTTCCATTTCTAATGATCTGCTAACGATCTTAGTTACGAATTCCGAATGGAAAACTTTGTCAGAAATTATCTTTCAATCACTTATCTGCATTTAAAATYTCAAAAGCAGATAATTTGACTTGAAAAGCTCTCAGTTTCAAATATGACGTTTTTAGAATCTCAGAATGTATAGGTTGTCATGTAGAGTTAGGTTAGGATCGCATTTCATTTCTCAAATTCCATTGAGTTCTATGGCAGCCTAAATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2527</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>466282</contig_pos>
        <strand>+</strand>
        <context>CAATCTTAGA[G/T]TGTTATCTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTATCACATGCTGTACGGTATTTCTTAGAAACGATCTTACAATCTTAGA</left_flank>
        <right_flank>TGTTATCTCAAGTGCCTAATGCTCAACAATTTAGCCATATATTTCCTGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTACTAAAGAATTTTCAATTTTCAGAAGAAAATGGTTACAACTTTCAATTTTGTGGCACACACGCGACGTTGGTTTTGCTTTGTTTCCTAGCACCGTAAACTTTTAATGTGGTTTTCCCGGCGGAGCATGTTGCCAGTAGAGATGTCCTTGAATATCTCAGTCTTTTCTGCATTTTCAGTAGAACACTTTGTCTGATATCTTTGAAAGTAAAATCAAAAGTTAGTATGATTCATTAAGGATGATTCAACGTTCAATGAATAAACATTATGTACCGTAAAACCTATAATAATATGGCCTCCTTTAAACAAATTTTTCTCGGTTCCCTTCAAAGATATAAAAAAGTTGTCAGCAGATATATTGTTTATCATAATATTATAAGTGTTTTGTTAGTTGACACATTTTCGATATCTTGCAGAGGAATTAAAATGATGCTCAAACTTGGAGCTTTTCTATCACATGCTGTACGGTATTTCTTAGAAACGATCTTACAATCTTAGATTGTTATCTCAAGTGCCTAATGCTCAACAATTTAGCCATATATTTCCTGAATTCATTTTTGTTTCCATTTCTAATGATCTGCTAACGATCTTAGTTACGAATTCCGAATGGAAAACTTTGTCAGAAATTATCTTTCAATCACTTATCTGCATTTAAAATTTCAAAAGCAGATAATTTGACTTGAAAAGCTCTCAGTTTCAAATATGACGTTTTTAGAATCTCAGAATGTATAGGTTGTCATGTAGAGTTAGGTTAGGATCGCATTTCATTTCTCAAATTCCATTGAGTTCTATGGCAGCCTAAATATTTTCAGGTTAGTGTTCTTGTCTCTTCTTATCTGAAATGGATCTGTGAATATAACTTTTTGTATCTAAACTTTTGATTTTCAAGCTATTTCCTGTGTAACCCTTCTGTCAAAAATGCACTCCCACAAGCCAAATGAATCCTATTCATAGTTTTTCAGAAATCCATCGAGTGGCAGTAACCAACTATCTGCGCTTA</canonical>
            <polymorphic>CTACTAAAGAATTTTCAATTTTCAGAAGAAAATGGTTACAACTTTCAATTTTGTGGCACACACGCGACGTTGGTTTTGCTTTGTTTCCTAGCACCGTAAACTTTTAATGTGGTTTTCCCGGCGGAGCATGTTGCCAGTAGAGATGTCCTTGAATATCTCAGTCTTTTCTGCATTTTCAGTAGAACACTTTGTCTGATATCTTTGAAAGTAAAATCAAAAGTTAGTATGATTCATTAAGGATGATTCAACGTTCAATGAATAAACATTATGTACCGTAAAACCTATAATAATATGGCCTCCTTTAAACAAATTTTTCTCGGTTCCCTTCAAAGATATAAAAAAGTTGTCAGCAGATATATTGTTTATCATAATATTATAAGTGTTTTGTTAGTTGACACATTTTCGATATCTTGCAGAGGAATTAAAATGATGCTCAAACTTGGAGCTTTTCTATCACATGCTGTACGGTATTTCTTAGAAACGATCTTACAATCTTAGAKTGTTATCTCAAGTGCCTAATGCTCAACAATTTAGCCATATATTTCCTGAATTCATTTTTGTTTCCATTTCTAATGATCTGCTAACGATCTTAGTTACGAATTCCGAATGGAAAACTTTGTCAGAAATTATCTTTCAATCACTTATCTGCATTTAAAATTTCAAAAGCAGATAATTTGACTTGAAAAGCTCTCAGTTTCAAATATGACGTTTTTAGAATCTCAGAATGTATAGGTTGTCATGTAGAGTTAGGTTAGGATCGCATTTCATTTCTCAAATTCCATTGAGTTCTATGGCAGCCTAAATATTTTCAGGTTAGTGTTCTTGTCTCTTCTTATCTGAAATGGATCTGTGAATATAACTTTTTGTATCTAAACTTTTGATTTTCAAGCTATTTCCTGTGTAACCCTTCTGTCAAAAATGCACTCCCACAAGCCAAATGAATCCTATTCATAGTTTTTCAGAAATCCATCGAGTGGCAGTAACCAACTATCTGCGCTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATNNNNATC</site>
                <isoschizomers>
                    <enzyme>BsaBI</enzyme>
                    <enzyme>Bse8I</enzyme>
                    <enzyme>BseJI</enzyme>
                    <enzyme>BsiBI</enzyme>
                    <enzyme>BsrBRI</enzyme>
                    <enzyme>MamI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAACGTTCAATGAATAAACA</pcr_primer_p1>
		<pcr_primer_p2>AAAATGAATTCAGGAAATATATGG</pcr_primer_p2>
		<pcr_amplicon_size>315</pcr_amplicon_size>
		<canonical_amplicon>TTCAACGTTCAATGAATAAACATTATGTACCGTAAAACCTATAATAATATGGCCTCCTTTAAACAAATTTTTCTCGGTTCCCTTCAAAGATATAAAAAAGTTGTCAGCAGATATATTGTTTATCATAATATTATAAGTGTTTTGTTAGTTGACACATTTTCGATATCTTGCAGAGGAATTAAAATGATGCTCAAACTTGGAGCTTTTCTATCACATGCTGTACGGTATTTCTTAGAAACGATCTTACAATCTTAGATTGTTATCTCAAGTGCCTAATGCTCAACAATTTAGCCATATATTTCCTGAATTCATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTCAACGTTCAATGAATAAACATTATGTACCGTAAAACCTATAATAATATGGCCTCCTTTAAACAAATTTTTCTCGGTTCCCTTCAAAGATATAAAAAAGTTGTCAGCAGATATATTGTTTATCATAATATTATAAGTGTTTTGTTAGTTGACACATTTTCGATATCTTGCAGAGGAATTAAAATGATGCTCAAACTTGGAGCTTTTCTATCACATGCTGTACGGTATTTCTTAGAAACGATCTTACAATCTTAGAKTGTTATCTCAAGTGCCTAATGCTCAACAATTTAGCCATATATTTCCTGAATTCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2529</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>495686</contig_pos>
        <strand>+</strand>
        <context>CTGCGTTGAA[A/C]ATTGGAGGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCCACTACAACCTTTGTCAAATACCAAAAATCGCATTTACCTGCGTTGAA</left_flank>
        <right_flank>ATTGGAGGTGGAAACAGAAGAGGAGTGTTGAAAATCGACCGTACCCCAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGATAAATTAGTTCAAATGTGGTAAACTTGAAAATATTCTAGTACTTCCTTCTAAATCTGAGATCATTAGACTAAAAATAATAAAATTGTATTAATAGTTAACTTTTCTAGTTCCTCTTAGTAGCTTAATTTTTACCTGACTTAGTTTTCGAATACATCTACTTAAGATCCACCCCAAAAACTCATGGAAAGAAAATCGAAATTCGTAGAAGTTCAAATTGTGAACTTAAATTAAGCTGCAATTCCTTATTTGAACTTGTTGAAGATAAACTGTGTTGACTAAAACTATGACTATAACTCTTGATCGTTCTCAGAACTCCTAAAAATAATCCACGTGGCTGAGCCTCAATTAACTTCTCACAAACTGACAATTTAGCCTATTAGCATTATCAAAAAATAAAAATACTGTATTTTTCGAGAATGTTATCTTCTCATTTGATGAAGATCCCCACTACAACCTTTGTCAAATACCAAAAATCGCATTTACCTGCGTTGAAAATTGGAGGTGGAAACAGAAGAGGAGTGTTGAAAATCGACCGTACCCCAAGAATCCCTTCCTTTGTGTCTTCTGAAAATAATTATTGTTCTCGCGCCGCTATATTTCCTCCTCATTCTCGATCTTATGGCGCGACTCAAAAACAGAGACAGGAAAGATGTCATGTGCATTTGATTCAACGATGCATAATTTCCTGTCAGAAGCACAACAATAAGGTATTGTCGCGGGGCCCTATATTGATGATGATGAGAAATGTCAAGAGGAAAAAGCAGAGTCTTCTAACAAGAAAAGTAACGTCAAAAGAAGATATGATTTTTGAAACGGATAGGTGGATAAATGGGTAGAGTGCGTAAACTCGCAGACTAGCCGGAAATAGGAGGAAGAATCAAAAATAGAGAGTGATGTGATGTTGTGGTTACCTGGATCTTTTGATGTCGAGAAGTTGAGCGGCTCATCCTCGTCACTCATTTTCAGAATATCAACCGCCGCAGACACCAGCTTG</canonical>
            <polymorphic>AAAGATAAATTAGTTCAAATGTGGTAAACTTGAAAATATTCTAGTACTTCCTTCTAAATCTGAGATCATTAGACTAAAAATAATAAAATTGTATTAATAGTTAACTTTTCTAGTTCCTCTTAGTAGCTTAATTTTTACCTGACTTAGTTTTCGAATACATCTACTTAAGATCCACCCCAAAAACTCATGGAAAGAAAATCGAAATTCGTAGAAGTTCAAATTGTGAACTTAAATTAAGCTGCAATTCCTTATTTGAACTTGTTGAAGATAAACTGTGTTGACTAAAACTATGACTATAACTCTTGATCGTTCTCAGAACTCCTAAAAATAATCCACGTGGCTGAGCCTCAATTAACTTCTCACAAACTGACAATTTAGCCTATTAGCATTATCAAAAAATAAAAATACTGTATTTTTCGAGAATGTTATCTTCTCATTTGATGAAGATCCCCACTACAACCTTTGTCAAATACCAAAAATCGCATTTACCTGCGTTGAAMATTGGAGGTGGAAACAGAAGAGGAGTGTTGAAAATCGACCGTACCCCAAGAATCCCTTCCTTTGTGTCTTCTGAAAATAATTATTGTTCTCGCGCCGCTATATTTCCTCCTCATTCTCGATCTTATGGCGCGACTCAAAAACAGAGACAGGAAAGATGTCATGTGCATTTGATTCAACGATGCATAATTTCCTGTCAGAAGCACAACAATAAGGTATTGTCGCGGGGCCCTATATTGATGATGATGAGAAATGTCAAGAGGAAAAAGCAGAGTCTTCTAACAAGAAAAGTAACGTCAAAAGAAGATATGATTTTTGAAACGGATAGGTGGATAAATGGGTAGAGTGCGTAAACTCGCAGACTAGCCGGAAATAGGAGGAAGAATCAAAAATAGAGAGTGATGTGATGTTGTGGTTACCTGGATCTTTTGATGTCGAGAAGTTGAGCGGCTCATCCTCGTCACTCATTTTCAGAATATCAACCGCCGCAGACACCAGCTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>315 128 107 107 79 79 73 43 22 16 13 11 7</canonical_bands>
                <polymorphic_bands>315 207 107 107 79 73 43 22 16 13 11 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCGAGAATGTTATCTTCTCATT</pcr_primer_p1>
		<pcr_primer_p2>ACATGACATCTTTCCTGTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCGAGAATGTTATCTTCTCATTTGATGAAGATCCCCACTACAACCTTTGTCAAATACCAAAAATCGCATTTACCTGCGTTGAAAATTGGAGGTGGAAACAGAAGAGGAGTGTTGAAAATCGACCGTACCCCAAGAATCCCTTCCTTTGTGTCTTCTGAAAATAATTATTGTTCTCGCGCCGCTATATTTCCTCCTCATTCTCGATCTTATGGCGCGACTCAAAAACAGAGACAGGAAAGATGTCATGT</canonical_amplicon>
		<polymorphic_amplicon>TTCGAGAATGTTATCTTCTCATTTGATGAAGATCCCCACTACAACCTTTGTCAAATACCAAAAATCGCATTTACCTGCGTTGAAMATTGGAGGTGGAAACAGAAGAGGAGTGTTGAAAATCGACCGTACCCCAAGAATCCCTTCCTTTGTGTCTTCTGAAAATAATTATTGTTCTCGCGCCGCTATATTTCCTCCTCATTCTCGATCTTATGGCGCGACTCAAAAACAGAGACAGGAAAGATGTCATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2530</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>495754</contig_pos>
        <strand>+</strand>
        <context>TCCTTTGTGT[C/T]TTCTGAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGAGGAGTGTTGAAAATCGACCGTACCCCAAGAATCCCTTCCTTTGTGT</left_flank>
        <right_flank>TTCTGAAAATAATTATTGTTCTCGCGCCGCTATATTTCCTCCTCATTCTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGACTAAAAATAATAAAATTGTATTAATAGTTAACTTTTCTAGTTCCTCTTAGTAGCTTAATTTTTACCTGACTTAGTTTTCGAATACATCTACTTAAGATCCACCCCAAAAACTCATGGAAAGAAAATCGAAATTCGTAGAAGTTCAAATTGTGAACTTAAATTAAGCTGCAATTCCTTATTTGAACTTGTTGAAGATAAACTGTGTTGACTAAAACTATGACTATAACTCTTGATCGTTCTCAGAACTCCTAAAAATAATCCACGTGGCTGAGCCTCAATTAACTTCTCACAAACTGACAATTTAGCCTATTAGCATTATCAAAAAATAAAAATACTGTATTTTTCGAGAATGTTATCTTCTCATTTGATGAAGATCCCCACTACAACCTTTGTCAAATACCAAAAATCGCATTTACCTGCGTTGAAAATTGGAGGTGGAAACAGAAGAGGAGTGTTGAAAATCGACCGTACCCCAAGAATCCCTTCCTTTGTGTCTTCTGAAAATAATTATTGTTCTCGCGCCGCTATATTTCCTCCTCATTCTCGATCTTATGGCGCGACTCAAAAACAGAGACAGGAAAGATGTCATGTGCATTTGATTCAACGATGCATAATTTCCTGTCAGAAGCACAACAATAAGGTATTGTCGCGGGGCCCTATATTGATGATGATGAGAAATGTCAAGAGGAAAAAGCAGAGTCTTCTAACAAGAAAAGTAACGTCAAAAGAAGATATGATTTTTGAAACGGATAGGTGGATAAATGGGTAGAGTGCGTAAACTCGCAGACTAGCCGGAAATAGGAGGAAGAATCAAAAATAGAGAGTGATGTGATGTTGTGGTTACCTGGATCTTTTGATGTCGAGAAGTTGAGCGGCTCATCCTCGTCACTCATTTTCAGAATATCAACCGCCGCAGACACCAGCTTGACTGTCGATGTGCGCAACTTGTGTCGCAAATATCAAATGACTTCTTTCAGTCTTGACCCCTGCCACTT</canonical>
            <polymorphic>TTAGACTAAAAATAATAAAATTGTATTAATAGTTAACTTTTCTAGTTCCTCTTAGTAGCTTAATTTTTACCTGACTTAGTTTTCGAATACATCTACTTAAGATCCACCCCAAAAACTCATGGAAAGAAAATCGAAATTCGTAGAAGTTCAAATTGTGAACTTAAATTAAGCTGCAATTCCTTATTTGAACTTGTTGAAGATAAACTGTGTTGACTAAAACTATGACTATAACTCTTGATCGTTCTCAGAACTCCTAAAAATAATCCACGTGGCTGAGCCTCAATTAACTTCTCACAAACTGACAATTTAGCCTATTAGCATTATCAAAAAATAAAAATACTGTATTTTTCGAGAATGTTATCTTCTCATTTGATGAAGATCCCCACTACAACCTTTGTCAAATACCAAAAATCGCATTTACCTGCGTTGAAAATTGGAGGTGGAAACAGAAGAGGAGTGTTGAAAATCGACCGTACCCCAAGAATCCCTTCCTTTGTGTYTTCTGAAAATAATTATTGTTCTCGCGCCGCTATATTTCCTCCTCATTCTCGATCTTATGGCGCGACTCAAAAACAGAGACAGGAAAGATGTCATGTGCATTTGATTCAACGATGCATAATTTCCTGTCAGAAGCACAACAATAAGGTATTGTCGCGGGGCCCTATATTGATGATGATGAGAAATGTCAAGAGGAAAAAGCAGAGTCTTCTAACAAGAAAAGTAACGTCAAAAGAAGATATGATTTTTGAAACGGATAGGTGGATAAATGGGTAGAGTGCGTAAACTCGCAGACTAGCCGGAAATAGGAGGAAGAATCAAAAATAGAGAGTGATGTGATGTTGTGGTTACCTGGATCTTTTGATGTCGAGAAGTTGAGCGGCTCATCCTCGTCACTCATTTTCAGAATATCAACCGCCGCAGACACCAGCTTGACTGTCGATGTGCGCAACTTGTGTCGCAAATATCAAATGACTTCTTTCAGTCTTGACCCCTGCCACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATACCAAAAATCGCATTTAC</pcr_primer_p1>
		<pcr_primer_p2>ATACCTTATTGTTGTGCTTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATACCAAAAATCGCATTTACCTGCGTTGAAAATTGGAGGTGGAAACAGAAGAGGAGTGTTGAAAATCGACCGTACCCCAAGAATCCCTTCCTTTGTGTCTTCTGAAAATAATTATTGTTCTCGCGCCGCTATATTTCCTCCTCATTCTCGATCTTATGGCGCGACTCAAAAACAGAGACAGGAAAGATGTCATGTGCATTTGATTCAACGATGCATAATTTCCTGTCAGAAGCACAACAATAAGGTAT</canonical_amplicon>
		<polymorphic_amplicon>AAATACCAAAAATCGCATTTACCTGCGTTGAAAATTGGAGGTGGAAACAGAAGAGGAGTGTTGAAAATCGACCGTACCCCAAGAATCCCTTCCTTTGTGTYTTCTGAAAATAATTATTGTTCTCGCGCCGCTATATTTCCTCCTCATTCTCGATCTTATGGCGCGACTCAAAAACAGAGACAGGAAAGATGTCATGTGCATTTGATTCAACGATGCATAATTTCCTGTCAGAAGCACAACAATAAGGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2531</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>495770</contig_pos>
        <strand>+</strand>
        <context>AAAATAATTA[C/T]TGTTCTCGCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCGACCGTACCCCAAGAATCCCTTCCTTTGTGTCTTCTGAAAATAATTA</left_flank>
        <right_flank>TGTTCTCGCGCCGCTATATTTCCTCCTCATTCTCGATCTTATGGCGCGAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTGTATTAATAGTTAACTTTTCTAGTTCCTCTTAGTAGCTTAATTTTTACCTGACTTAGTTTTCGAATACATCTACTTAAGATCCACCCCAAAAACTCATGGAAAGAAAATCGAAATTCGTAGAAGTTCAAATTGTGAACTTAAATTAAGCTGCAATTCCTTATTTGAACTTGTTGAAGATAAACTGTGTTGACTAAAACTATGACTATAACTCTTGATCGTTCTCAGAACTCCTAAAAATAATCCACGTGGCTGAGCCTCAATTAACTTCTCACAAACTGACAATTTAGCCTATTAGCATTATCAAAAAATAAAAATACTGTATTTTTCGAGAATGTTATCTTCTCATTTGATGAAGATCCCCACTACAACCTTTGTCAAATACCAAAAATCGCATTTACCTGCGTTGAAAATTGGAGGTGGAAACAGAAGAGGAGTGTTGAAAATCGACCGTACCCCAAGAATCCCTTCCTTTGTGTCTTCTGAAAATAATTATTGTTCTCGCGCCGCTATATTTCCTCCTCATTCTCGATCTTATGGCGCGACTCAAAAACAGAGACAGGAAAGATGTCATGTGCATTTGATTCAACGATGCATAATTTCCTGTCAGAAGCACAACAATAAGGTATTGTCGCGGGGCCCTATATTGATGATGATGAGAAATGTCAAGAGGAAAAAGCAGAGTCTTCTAACAAGAAAAGTAACGTCAAAAGAAGATATGATTTTTGAAACGGATAGGTGGATAAATGGGTAGAGTGCGTAAACTCGCAGACTAGCCGGAAATAGGAGGAAGAATCAAAAATAGAGAGTGATGTGATGTTGTGGTTACCTGGATCTTTTGATGTCGAGAAGTTGAGCGGCTCATCCTCGTCACTCATTTTCAGAATATCAACCGCCGCAGACACCAGCTTGACTGTCGATGTGCGCAACTTGTGTCGCAAATATCAAATGACTTCTTTCAGTCTTGACCCCTGCCACTTCAAGCTCCTCCCACAC</canonical>
            <polymorphic>AAAATTGTATTAATAGTTAACTTTTCTAGTTCCTCTTAGTAGCTTAATTTTTACCTGACTTAGTTTTCGAATACATCTACTTAAGATCCACCCCAAAAACTCATGGAAAGAAAATCGAAATTCGTAGAAGTTCAAATTGTGAACTTAAATTAAGCTGCAATTCCTTATTTGAACTTGTTGAAGATAAACTGTGTTGACTAAAACTATGACTATAACTCTTGATCGTTCTCAGAACTCCTAAAAATAATCCACGTGGCTGAGCCTCAATTAACTTCTCACAAACTGACAATTTAGCCTATTAGCATTATCAAAAAATAAAAATACTGTATTTTTCGAGAATGTTATCTTCTCATTTGATGAAGATCCCCACTACAACCTTTGTCAAATACCAAAAATCGCATTTACCTGCGTTGAAAATTGGAGGTGGAAACAGAAGAGGAGTGTTGAAAATCGACCGTACCCCAAGAATCCCTTCCTTTGTGTCTTCTGAAAATAATTAYTGTTCTCGCGCCGCTATATTTCCTCCTCATTCTCGATCTTATGGCGCGACTCAAAAACAGAGACAGGAAAGATGTCATGTGCATTTGATTCAACGATGCATAATTTCCTGTCAGAAGCACAACAATAAGGTATTGTCGCGGGGCCCTATATTGATGATGATGAGAAATGTCAAGAGGAAAAAGCAGAGTCTTCTAACAAGAAAAGTAACGTCAAAAGAAGATATGATTTTTGAAACGGATAGGTGGATAAATGGGTAGAGTGCGTAAACTCGCAGACTAGCCGGAAATAGGAGGAAGAATCAAAAATAGAGAGTGATGTGATGTTGTGGTTACCTGGATCTTTTGATGTCGAGAAGTTGAGCGGCTCATCCTCGTCACTCATTTTCAGAATATCAACCGCCGCAGACACCAGCTTGACTGTCGATGTGCGCAACTTGTGTCGCAAATATCAAATGACTTCTTTCAGTCTTGACCCCTGCCACTTCAAGCTCCTCCCACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATACCAAAAATCGCATTTAC</pcr_primer_p1>
		<pcr_primer_p2>ATACCTTATTGTTGTGCTTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATACCAAAAATCGCATTTACCTGCGTTGAAAATTGGAGGTGGAAACAGAAGAGGAGTGTTGAAAATCGACCGTACCCCAAGAATCCCTTCCTTTGTGTCTTCTGAAAATAATTATTGTTCTCGCGCCGCTATATTTCCTCCTCATTCTCGATCTTATGGCGCGACTCAAAAACAGAGACAGGAAAGATGTCATGTGCATTTGATTCAACGATGCATAATTTCCTGTCAGAAGCACAACAATAAGGTAT</canonical_amplicon>
		<polymorphic_amplicon>AAATACCAAAAATCGCATTTACCTGCGTTGAAAATTGGAGGTGGAAACAGAAGAGGAGTGTTGAAAATCGACCGTACCCCAAGAATCCCTTCCTTTGTGTCTTCTGAAAATAATTAYTGTTCTCGCGCCGCTATATTTCCTCCTCATTCTCGATCTTATGGCGCGACTCAAAAACAGAGACAGGAAAGATGTCATGTGCATTTGATTCAACGATGCATAATTTCCTGTCAGAAGCACAACAATAAGGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2532</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>575376</contig_pos>
        <strand>+</strand>
        <context>GGTGGTTACT[A/G]TTGCCTGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGCACTTTCGTAACGGCTCAAGCTTTTGCCCAAGAGGTAGGTGGTTACT</left_flank>
        <right_flank>TTGCCTGTTTCAAAAATTTGAACAAATTTTATAGCTTGATTGTCCATCCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACAGTCCTCGGATATTGTTATTTTTCCACATTATCAGAGTTGCTGAAGTTTTGAACTTTTCTTTATCGTTCGCTCCAACGCCTCTGATTGGCTCCAAAAGCCGTACAAGTCTGAAAGAGGCGGGGTCAACGATGGTTTGCATATAAGGCGAATGCGCTCTTGAATTTGATCTCAGTTTCGTTATCTCCTTTTCTAACTTCACTGGAAATACCTTTTCATCTTTCAGGTGTCTATGATCCTCAACGATTGGGGAAACTCCCTCATGGGGGTGTATAAGGCAATCAATTGGGAACACATGGTAGTCCCATGTTATCTGCAAACTGTCATATTGATATATTTTCTTGGAGCCAACGTTTTCATGACCTACTATGATTACCCAAACTATACCAGTCTCCAACCGGGTACCACACATTTAGCCAGGTGCAATCTAAACATGCTAACGATCACCAGCACTTTCGTAACGGCTCAAGCTTTTGCCCAAGAGGTAGGTGGTTACTATTGCCTGTTTCAAAAATTTGAACAAATTTTATAGCTTGATTGTCCATCCACGAGCTATTTTCTGACGTTTCTCATCAACGGTTTTTTCGTTTATACTTCTATTATGGATATCATTCTTTTGTGGACTTTTTCAGAAATATTGAGTCCTCTAAAACAGTGCAAAGCAGGGGAAATTCTTAAAATATGGCGCTGCTACACATGTGTAGCTCTGTTTTTCATAGGATGTGGACAGTATCTCGATTTTCTAATTTTACATTATCTCAAAGCAAATTTGATGGCTACCGTTTATTTTGTTTACGGTCTATTTTTGATCCGAATTACGAGCGACTATTACCGCAATGTGCCGAAGCTTGAAGAATTAAAGGTACAAAAGTCATACATGAACTTTTTGAATAAATGAAATTTTGCAGAGAAAGAACAACGGCCATCCAAAGATTCGTGATTTCAATGCACTTCGAGATATTATAATAAGTCATTCCCGTTTCACAATTATCAATTCC</canonical>
            <polymorphic>CCACAGTCCTCGGATATTGTTATTTTTCCACATTATCAGAGTTGCTGAAGTTTTGAACTTTTCTTTATCGTTCGCTCCAACGCCTCTGATTGGCTCCAAAAGCCGTACAAGTCTGAAAGAGGCGGGGTCAACGATGGTTTGCATATAAGGCGAATGCGCTCTTGAATTTGATCTCAGTTTCGTTATCTCCTTTTCTAACTTCACTGGAAATACCTTTTCATCTTTCAGGTGTCTATGATCCTCAACGATTGGGGAAACTCCCTCATGGGGGTGTATAAGGCAATCAATTGGGAACACATGGTAGTCCCATGTTATCTGCAAACTGTCATATTGATATATTTTCTTGGAGCCAACGTTTTCATGACCTACTATGATTACCCAAACTATACCAGTCTCCAACCGGGTACCACACATTTAGCCAGGTGCAATCTAAACATGCTAACGATCACCAGCACTTTCGTAACGGCTCAAGCTTTTGCCCAAGAGGTAGGTGGTTACTRTTGCCTGTTTCAAAAATTTGAACAAATTTTATAGCTTGATTGTCCATCCACGAGCTATTTTCTGACGTTTCTCATCAACGGTTTTTTCGTTTATACTTCTATTATGGATATCATTCTTTTGTGGACTTTTTCAGAAATATTGAGTCCTCTAAAACAGTGCAAAGCAGGGGAAATTCTTAAAATATGGCGCTGCTACACATGTGTAGCTCTGTTTTTCATAGGATGTGGACAGTATCTCGATTTTCTAATTTTACATTATCTCAAAGCAAATTTGATGGCTACCGTTTATTTTGTTTACGGTCTATTTTTGATCCGAATTACGAGCGACTATTACCGCAATGTGCCGAAGCTTGAAGAATTAAAGGTACAAAAGTCATACATGAACTTTTTGAATAAATGAAATTTTGCAGAGAAAGAACAACGGCCATCCAAAGATTCGTGATTTCAATGCACTTCGAGATATTATAATAAGTCATTCCCGTTTCACAATTATCAATTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACCCAAACTATACCAGTCTCC</pcr_primer_p1>
		<pcr_primer_p2>CCACAAAAGAATGATATCCATAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TACCCAAACTATACCAGTCTCCAACCGGGTACCACACATTTAGCCAGGTGCAATCTAAACATGCTAACGATCACCAGCACTTTCGTAACGGCTCAAGCTTTTGCCCAAGAGGTAGGTGGTTACTATTGCCTGTTTCAAAAATTTGAACAAATTTTATAGCTTGATTGTCCATCCACGAGCTATTTTCTGACGTTTCTCATCAACGGTTTTTTCGTTTATACTTCTATTATGGATATCATTCTTTTGTGG</canonical_amplicon>
		<polymorphic_amplicon>TACCCAAACTATACCAGTCTCCAACCGGGTACCACACATTTAGCCAGGTGCAATCTAAACATGCTAACGATCACCAGCACTTTCGTAACGGCTCAAGCTTTTGCCCAAGAGGTAGGTGGTTACTRTTGCCTGTTTCAAAAATTTGAACAAATTTTATAGCTTGATTGTCCATCCACGAGCTATTTTCTGACGTTTCTCATCAACGGTTTTTTCGTTTATACTTCTATTATGGATATCATTCTTTTGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2533</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>578873</contig_pos>
        <strand>+</strand>
        <context>AAACGAAGTT[C/T]AATTTTCATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGCTATTCTGAAGTGTTACGAAAAAGTGGTCAATCAGAGAAACGAAGTT</left_flank>
        <right_flank>AATTTTCATTGATTGTGATATCAATTTTTCCGAGCAATGAAATACCTGGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACGTCGTCGTCATCATCGTTCACATCGCGTTTCTTTCTACACGGGCACTGATCTCCCCAGTTATCACGACACTTATAGATGCGCCAACGGTCCTCCACAGTGTAGTAGCATTTCCACAGCTGTAAAAGTTTATCGTTCAAGAGTGGACTATAATTTCTGGTTCTGGAACTTTAGCAGATTTTGAGATTTGGGAAATACATAATTTGAAGTTCTCAAAAGAAAGCTTTGTGGATGGTATTAAATCTAAGTTATAGATGACAAGACAAAACAGATTTCATATTTTCGCTTTTCGTTTAAAAATAGTCAATTTGTCAGAAAAAAGTACATTTTTTAAATTTACAATTCTTTTGGTACAAACTCGATCAAGATATGCCGAAAATGGCACGAAAAATTCACCGGAAAGGCACGAAAATGGCACAATCAAAAATAAGAGTTGTGTTTCTTTATTCGCTATTCTGAAGTGTTACGAAAAAGTGGTCAATCAGAGAAACGAAGTTTAATTTTCATTGATTGTGATATCAATTTTTCCGAGCAATGAAATACCTGGGATACTTCTTTAAGACTCCAAAGTTTAAAATATCTTTTTTGGTCAATTTGGATAGATTCCAGACTGTATGTTGACTCAAAAAACCGAAAAAATTTAATAGAAACCAAAAACAATACCTGCCCCTCTACACAATCTCTCTGCCACTTCCTCCGTTTGCATTCCTTGGACAGCCGGTTCTCCTTGTTGAACTTCTTCTTCTGTTTCATATATCGATCCCGAATCTTTTTCAACTTTGGCATTTTCCTACAAAACTCTAGTTAATGTGAAAAGGTTCAGATTTTAATTTACCCTCTTTCTATCAAAACTGTATCTCTCCACGGCTTCAAGGCTTCTGCATGCTTTCTCTTCTTCTTTTTTAAAGCCACCAGTTCCAGCAAACTTCTTCCGTTCATTCTTGCTGGTTTTGATACACCCGCAATTGCTAGCATAGTTGGTGCGACATCCACATTTG</canonical>
            <polymorphic>CAACGTCGTCGTCATCATCGTTCACATCGCGTTTCTTTCTACACGGGCACTGATCTCCCCAGTTATCACGACACTTATAGATGCGCCAACGGTCCTCCACAGTGTAGTAGCATTTCCACAGCTGTAAAAGTTTATCGTTCAAGAGTGGACTATAATTTCTGGTTCTGGAACTTTAGCAGATTTTGAGATTTGGGAAATACATAATTTGAAGTTCTCAAAAGAAAGCTTTGTGGATGGTATTAAATCTAAGTTATAGATGACAAGACAAAACAGATTTCATATTTTCGCTTTTCGTTTAAAAATAGTCAATTTGTCAGAAAAAAGTACATTTTTTAAATTTACAATTCTTTTGGTACAAACTCGATCAAGATATGCCGAAAATGGCACGAAAAATTCACCGGAAAGGCACGAAAATGGCACAATCAAAAATAAGAGTTGTGTTTCTTTATTCGCTATTCTGAAGTGTTACGAAAAAGTGGTCAATCAGAGAAACGAAGTTYAATTTTCATTGATTGTGATATCAATTTTTCCGAGCAATGAAATACCTGGGATACTTCTTTAAGACTCCAAAGTTTAAAATATCTTTTTTGGTCAATTTGGATAGATTCCAGACTGTATGTTGACTCAAAAAACCGAAAAAATTTAATAGAAACCAAAAACAATACCTGCCCCTCTACACAATCTCTCTGCCACTTCCTCCGTTTGCATTCCTTGGACAGCCGGTTCTCCTTGTTGAACTTCTTCTTCTGTTTCATATATCGATCCCGAATCTTTTTCAACTTTGGCATTTTCCTACAAAACTCTAGTTAATGTGAAAAGGTTCAGATTTTAATTTACCCTCTTTCTATCAAAACTGTATCTCTCCACGGCTTCAAGGCTTCTGCATGCTTTCTCTTCTTCTTTTTTAAAGCCACCAGTTCCAGCAAACTTCTTCCGTTCATTCTTGCTGGTTTTGATACACCCGCAATTGCTAGCATAGTTGGTGCGACATCCACATTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>240 166 164 95 76 69 60 56 37 22 15</canonical_bands>
                <polymorphic_bands>240 226 164 95 76 69 56 37 22 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTATTCGCTATTCTGAAGTGTT</pcr_primer_p1>
		<pcr_primer_p2>GTGGCAGAGAGATTGTGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTATTCGCTATTCTGAAGTGTTACGAAAAAGTGGTCAATCAGAGAAACGAAGTTTAATTTTCATTGATTGTGATATCAATTTTTCCGAGCAATGAAATACCTGGGATACTTCTTTAAGACTCCAAAGTTTAAAATATCTTTTTTGGTCAATTTGGATAGATTCCAGACTGTATGTTGACTCAAAAAACCGAAAAAATTTAATAGAAACCAAAAACAATACCTGCCCCTCTACACAATCTCTCTGCCAC</canonical_amplicon>
		<polymorphic_amplicon>TTTATTCGCTATTCTGAAGTGTTACGAAAAAGTGGTCAATCAGAGAAACGAAGTTYAATTTTCATTGATTGTGATATCAATTTTTCCGAGCAATGAAATACCTGGGATACTTCTTTAAGACTCCAAAGTTTAAAATATCTTTTTTGGTCAATTTGGATAGATTCCAGACTGTATGTTGACTCAAAAAACCGAAAAAATTTAATAGAAACCAAAAACAATACCTGCCCCTCTACACAATCTCTCTGCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2534</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>581449</contig_pos>
        <strand>+</strand>
        <context>CCAATCAAAA[A/G]AGTAACACCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTATTACACACTCACCTCATTCCTTTCACTCATTTGCCCACCAATCAAAA</left_flank>
        <right_flank>AGTAACACCAATCGCCTCGGACAGATACTTTTCGAATTGTCCGCACTGAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAGAAATAGAAATCTATAGAAAAAAAAACGCACCCTGATGTAAATTCTGTTCCTCGCTCTTTCATAATTTGGGTGGTTTTTGGCATGAAATTCATCGAGCCTAGCTCAATGTCTTGGTCATCAGTCAAAATTAGGATCACATTGTGTTGACTGAAAATCAGAAATTATCAGGTTTCAAAAAAACTTGGAAACTTACGAATCAACAAAATTGATAACCGCATTCGTACTAAAAACGAACGTGGAGAACAGAAACACCACGCAACTATTCCAATTCATAAATGTGTACTAAAAGGGACAACAATAAAAATGTGGACCAACGAGTGTCATCAAATGAAGTGGCAATCTGGAACAATTAAAGTAGGTGCGAGAAGACCGAGGAGGGGTGGTGGGGATGTAGAGAACAAGTGAAGTGGTTTGAGGCGAGCCCAACGATGTGTGAGGACCCCACTATTACACACTCACCTCATTCCTTTCACTCATTTGCCCACCAATCAAAAGAGTAACACCAATCGCCTCGGACAGATACTTTTCGAATTGTCCGCACTGAGATTCTTGACATTTTTTAACCAGGTCGTTTTTATTATGGCCATTCTTATTACAGACAAAATATAAATCCACCAGGTAAATGTATTCAGCAATTCAGGATTTTCAAATCAACTGGGAAGAGAGGAATCAAGGGGAGAAGGAATGCGGACAATAAAAGTTATGACAATAAAAAATGGAATGAGAAATTGGAAATTATTAGGACGATGTTACAATTAACTTGTTTGGGTGTGTTTTGAAGTCAGAGAAAACGTTCTGGGAACCAGCAACAATACAGGTGGGATTCAAAACATACAAAAAGGCCATGGCGAAATTAGGGTTTTTGAAAATATCTTAAAAGAGAAATCTTGTTTTTTCCAGTCCTAACAATGACGGTCGATTTCCTTGATCTTCTTGAAGGCGTCCTCAAACTTGGTGAGAATTTTGATGTCACTATTCTGTGGGACGAAGTAGCA</canonical>
            <polymorphic>TATAGAAATAGAAATCTATAGAAAAAAAAACGCACCCTGATGTAAATTCTGTTCCTCGCTCTTTCATAATTTGGGTGGTTTTTGGCATGAAATTCATCGAGCCTAGCTCAATGTCTTGGTCATCAGTCAAAATTAGGATCACATTGTGTTGACTGAAAATCAGAAATTATCAGGTTTCAAAAAAACTTGGAAACTTACGAATCAACAAAATTGATAACCGCATTCGTACTAAAAACGAACGTGGAGAACAGAAACACCACGCAACTATTCCAATTCATAAATGTGTACTAAAAGGGACAACAATAAAAATGTGGACCAACGAGTGTCATCAAATGAAGTGGCAATCTGGAACAATTAAAGTAGGTGCGAGAAGACCGAGGAGGGGTGGTGGGGATGTAGAGAACAAGTGAAGTGGTTTGAGGCGAGCCCAACGATGTGTGAGGACCCCACTATTACACACTCACCTCATTCCTTTCACTCATTTGCCCACCAATCAAAARAGTAACACCAATCGCCTCGGACAGATACTTTTCGAATTGTCCGCACTGAGATTCTTGACATTTTTTAACCAGGTCGTTTTTATTATGGCCATTCTTATTACAGACAAAATATAAATCCACCAGGTAAATGTATTCAGCAATTCAGGATTTTCAAATCAACTGGGAAGAGAGGAATCAAGGGGAGAAGGAATGCGGACAATAAAAGTTATGACAATAAAAAATGGAATGAGAAATTGGAAATTATTAGGACGATGTTACAATTAACTTGTTTGGGTGTGTTTTGAAGTCAGAGAAAACGTTCTGGGAACCAGCAACAATACAGGTGGGATTCAAAACATACAAAAAGGCCATGGCGAAATTAGGGTTTTTGAAAATATCTTAAAAGAGAAATCTTGTTTTTTCCAGTCCTAACAATGACGGTCGATTTCCTTGATCTTCTTGAAGGCGTCCTCAAACTTGGTGAGAATTTTGATGTCACTATTCTGTGGGACGAAGTAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTAGAGAACAAGTGAAGTGGT</pcr_primer_p1>
		<pcr_primer_p2>GAATTGCTGAATACATTTACCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGTAGAGAACAAGTGAAGTGGTTTGAGGCGAGCCCAACGATGTGTGAGGACCCCACTATTACACACTCACCTCATTCCTTTCACTCATTTGCCCACCAATCAAAAGAGTAACACCAATCGCCTCGGACAGATACTTTTCGAATTGTCCGCACTGAGATTCTTGACATTTTTTAACCAGGTCGTTTTTATTATGGCCATTCTTATTACAGACAAAATATAAATCCACCAGGTAAATGTATTCAGCAATTC</canonical_amplicon>
		<polymorphic_amplicon>ATGTAGAGAACAAGTGAAGTGGTTTGAGGCGAGCCCAACGATGTGTGAGGACCCCACTATTACACACTCACCTCATTCCTTTCACTCATTTGCCCACCAATCAAAARAGTAACACCAATCGCCTCGGACAGATACTTTTCGAATTGTCCGCACTGAGATTCTTGACATTTTTTAACCAGGTCGTTTTTATTATGGCCATTCTTATTACAGACAAAATATAAATCCACCAGGTAAATGTATTCAGCAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2535</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>646062</contig_pos>
        <strand>+</strand>
        <context>CAAAAAATCG[A/T]AAAGAACTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATGGCTTCAAATCTCCTTCTCCGTTGATACCGGTACCTTCAAAAAATCG</left_flank>
        <right_flank>AAAGAACTATTAAATGTTGAAATTTTTGCAGTCATTACTTCTGTGGAGAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCCAAGAATGGCTTAGAAGCCCAGGGATTAGCACTCATTTTCACAAGTTTCCCGACGACGTTCATTTGCAAATTTGAAACTCCTCATTGAAATTGAGAAAGGGAACGAACATCTAATTTAGAGACCAAGGGAACGTCTTTGACGTGAGAAGGGTGCTTCATCAGGCGTCGTCGTCACTCACGTTAACGCCTCAACAAGCGATTTATCTAGTTTGATTGTTTTGACAGACCGCAGAGACGAAAGCGGCGGACGTCTTCCATAGCTTCACTTCCTAATTGCAATGTGTTGCATTGCGCGCGATAAAAATCTTGATTAGAGGAGCTCATCTGGAGAGGGAGCACGAAACTTGGAATTGAGAGCAATCCTATATTTTCCATTGCAGGGCTCATCAAGAATCTGGAAGTGGCGCCTGGTGTCCAAAGAATCAAATCAACTCCCTTAGTAAGGAATGGCTTCAAATCTCCTTCTCCGTTGATACCGGTACCTTCAAAAAATCGTAAAGAACTATTAAATGTTGAAATTTTTGCAGTCATTACTTCTGTGGAGACTCAGGGACGTTATGACGACGGTCGAGGACAGGAGTACGCTACCGCATTCAAAATTCAGTATTGGCGACCTTCATTAAATGCCTGGGCATCCTATAAAGACGATTTCGAGCTAGAGGTTCGTCCTTTTCATTCAAAATGTCCGCTAATTATCGTATCGGCACCCTTTCGGTCAGCTCGTTTAGATTTATGCGGATTGCACCCATTTCTTAGAATTGTGAATCACAAAAGACTTTTCGCCTTTTTGTCGAACAATAGGGGAATATGACTTTTCTGGTCGTAATACTGTCGCTATACGAGCAACCGTGTTTGGGTGTGAATCAGCAAGGAACACATTTGAATACAGAGAAACCCGTTATCCGAGATTTATTACAAGGTCTTTTCTCAATCCGATTAGATATCAAGCCATTGAAATTCAAATTTCCGCTATATACAAATGCCATCATCATATTC</canonical>
            <polymorphic>TTCCCAAGAATGGCTTAGAAGCCCAGGGATTAGCACTCATTTTCACAAGTTTCCCGACGACGTTCATTTGCAAATTTGAAACTCCTCATTGAAATTGAGAAAGGGAACGAACATCTAATTTAGAGACCAAGGGAACGTCTTTGACGTGAGAAGGGTGCTTCATCAGGCGTCGTCGTCACTCACGTTAACGCCTCAACAAGCGATTTATCTAGTTTGATTGTTTTGACAGACCGCAGAGACGAAAGCGGCGGACGTCTTCCATAGCTTCACTTCCTAATTGCAATGTGTTGCATTGCGCGCGATAAAAATCTTGATTAGAGGAGCTCATCTGGAGAGGGAGCACGAAACTTGGAATTGAGAGCAATCCTATATTTTCCATTGCAGGGCTCATCAAGAATCTGGAAGTGGCGCCTGGTGTCCAAAGAATCAAATCAACTCCCTTAGTAAGGAATGGCTTCAAATCTCCTTCTCCGTTGATACCGGTACCTTCAAAAAATCGWAAAGAACTATTAAATGTTGAAATTTTTGCAGTCATTACTTCTGTGGAGACTCAGGGACGTTATGACGACGGTCGAGGACAGGAGTACGCTACCGCATTCAAAATTCAGTATTGGCGACCTTCATTAAATGCCTGGGCATCCTATAAAGACGATTTCGAGCTAGAGGTTCGTCCTTTTCATTCAAAATGTCCGCTAATTATCGTATCGGCACCCTTTCGGTCAGCTCGTTTAGATTTATGCGGATTGCACCCATTTCTTAGAATTGTGAATCACAAAAGACTTTTCGCCTTTTTGTCGAACAATAGGGGAATATGACTTTTCTGGTCGTAATACTGTCGCTATACGAGCAACCGTGTTTGGGTGTGAATCAGCAAGGAACACATTTGAATACAGAGAAACCCGTTATCCGAGATTTATTACAAGGTCTTTTCTCAATCCGATTAGATATCAAGCCATTGAAATTCAAATTTCCGCTATATACAAATGCCATCATCATATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATAAAAATCTTGATTAGAGGA</pcr_primer_p1>
		<pcr_primer_p2>TGAGTCTCCACAGAAGTAATGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CGATAAAAATCTTGATTAGAGGAGCTCATCTGGAGAGGGAGCACGAAACTTGGAATTGAGAGCAATCCTATATTTTCCATTGCAGGGCTCATCAAGAATCTGGAAGTGGCGCCTGGTGTCCAAAGAATCAAATCAACTCCCTTAGTAAGGAATGGCTTCAAATCTCCTTCTCCGTTGATACCGGTACCTTCAAAAAATCGTAAAGAACTATTAAATGTTGAAATTTTTGCAGTCATTACTTCTGTGGAGACTCA</canonical_amplicon>
		<polymorphic_amplicon>CGATAAAAATCTTGATTAGAGGAGCTCATCTGGAGAGGGAGCACGAAACTTGGAATTGAGAGCAATCCTATATTTTCCATTGCAGGGCTCATCAAGAATCTGGAAGTGGCGCCTGGTGTCCAAAGAATCAAATCAACTCCCTTAGTAAGGAATGGCTTCAAATCTCCTTCTCCGTTGATACCGGTACCTTCAAAAAATCGWAAAGAACTATTAAATGTTGAAATTTTTGCAGTCATTACTTCTGTGGAGACTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2536</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>646134</contig_pos>
        <strand>+</strand>
        <context>ATGACGACGG[C/T]CGAGGACAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTTGCAGTCATTACTTCTGTGGAGACTCAGGGACGTTATGACGACGG</left_flank>
        <right_flank>CGAGGACAGGAGTACGCTACCGCATTCAAAATTCAGTATTGGCGACCTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTGAAACTCCTCATTGAAATTGAGAAAGGGAACGAACATCTAATTTAGAGACCAAGGGAACGTCTTTGACGTGAGAAGGGTGCTTCATCAGGCGTCGTCGTCACTCACGTTAACGCCTCAACAAGCGATTTATCTAGTTTGATTGTTTTGACAGACCGCAGAGACGAAAGCGGCGGACGTCTTCCATAGCTTCACTTCCTAATTGCAATGTGTTGCATTGCGCGCGATAAAAATCTTGATTAGAGGAGCTCATCTGGAGAGGGAGCACGAAACTTGGAATTGAGAGCAATCCTATATTTTCCATTGCAGGGCTCATCAAGAATCTGGAAGTGGCGCCTGGTGTCCAAAGAATCAAATCAACTCCCTTAGTAAGGAATGGCTTCAAATCTCCTTCTCCGTTGATACCGGTACCTTCAAAAAATCGTAAAGAACTATTAAATGTTGAAATTTTTGCAGTCATTACTTCTGTGGAGACTCAGGGACGTTATGACGACGGTCGAGGACAGGAGTACGCTACCGCATTCAAAATTCAGTATTGGCGACCTTCATTAAATGCCTGGGCATCCTATAAAGACGATTTCGAGCTAGAGGTTCGTCCTTTTCATTCAAAATGTCCGCTAATTATCGTATCGGCACCCTTTCGGTCAGCTCGTTTAGATTTATGCGGATTGCACCCATTTCTTAGAATTGTGAATCACAAAAGACTTTTCGCCTTTTTGTCGAACAATAGGGGAATATGACTTTTCTGGTCGTAATACTGTCGCTATACGAGCAACCGTGTTTGGGTGTGAATCAGCAAGGAACACATTTGAATACAGAGAAACCCGTTATCCGAGATTTATTACAAGGTCTTTTCTCAATCCGATTAGATATCAAGCCATTGAAATTCAAATTTCCGCTATATACAAATGCCATCATCATATTCACATTTCCCTTTAGTTTTTTGTTGTGTTTGATGGGAAAAGTGTATGGGACATCAATTTTTTGTTGTGTTTAG</canonical>
            <polymorphic>AATTTGAAACTCCTCATTGAAATTGAGAAAGGGAACGAACATCTAATTTAGAGACCAAGGGAACGTCTTTGACGTGAGAAGGGTGCTTCATCAGGCGTCGTCGTCACTCACGTTAACGCCTCAACAAGCGATTTATCTAGTTTGATTGTTTTGACAGACCGCAGAGACGAAAGCGGCGGACGTCTTCCATAGCTTCACTTCCTAATTGCAATGTGTTGCATTGCGCGCGATAAAAATCTTGATTAGAGGAGCTCATCTGGAGAGGGAGCACGAAACTTGGAATTGAGAGCAATCCTATATTTTCCATTGCAGGGCTCATCAAGAATCTGGAAGTGGCGCCTGGTGTCCAAAGAATCAAATCAACTCCCTTAGTAAGGAATGGCTTCAAATCTCCTTCTCCGTTGATACCGGTACCTTCAAAAAATCGTAAAGAACTATTAAATGTTGAAATTTTTGCAGTCATTACTTCTGTGGAGACTCAGGGACGTTATGACGACGGYCGAGGACAGGAGTACGCTACCGCATTCAAAATTCAGTATTGGCGACCTTCATTAAATGCCTGGGCATCCTATAAAGACGATTTCGAGCTAGAGGTTCGTCCTTTTCATTCAAAATGTCCGCTAATTATCGTATCGGCACCCTTTCGGTCAGCTCGTTTAGATTTATGCGGATTGCACCCATTTCTTAGAATTGTGAATCACAAAAGACTTTTCGCCTTTTTGTCGAACAATAGGGGAATATGACTTTTCTGGTCGTAATACTGTCGCTATACGAGCAACCGTGTTTGGGTGTGAATCAGCAAGGAACACATTTGAATACAGAGAAACCCGTTATCCGAGATTTATTACAAGGTCTTTTCTCAATCCGATTAGATATCAAGCCATTGAAATTCAAATTTCCGCTATATACAAATGCCATCATCATATTCACATTTCCCTTTAGTTTTTTGTTGTGTTTGATGGGAAAAGTGTATGGGACATCAATTTTTTGTTGTGTTTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNNGTC</site>
                <isoschizomers>
                    <enzyme>BoxI</enzyme>
                    <enzyme>BstPAI</enzyme>
                    <enzyme>PshAI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>498 264 220 18</canonical_bands>
                <polymorphic_bands>762 220 18</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 276 140 83</canonical_bands>
                <polymorphic_bands>584 276 140</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCTCCTTCTCCGTTGATA</pcr_primer_p1>
		<pcr_primer_p2>ATACGATAATTAGCGGACATTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATCTCCTTCTCCGTTGATACCGGTACCTTCAAAAAATCGTAAAGAACTATTAAATGTTGAAATTTTTGCAGTCATTACTTCTGTGGAGACTCAGGGACGTTATGACGACGGTCGAGGACAGGAGTACGCTACCGCATTCAAAATTCAGTATTGGCGACCTTCATTAAATGCCTGGGCATCCTATAAAGACGATTTCGAGCTAGAGGTTCGTCCTTTTCATTCAAAATGTCCGCTAATTATCGTAT</canonical_amplicon>
		<polymorphic_amplicon>AAATCTCCTTCTCCGTTGATACCGGTACCTTCAAAAAATCGTAAAGAACTATTAAATGTTGAAATTTTTGCAGTCATTACTTCTGTGGAGACTCAGGGACGTTATGACGACGGYCGAGGACAGGAGTACGCTACCGCATTCAAAATTCAGTATTGGCGACCTTCATTAAATGCCTGGGCATCCTATAAAGACGATTTCGAGCTAGAGGTTCGTCCTTTTCATTCAAAATGTCCGCTAATTATCGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2537</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>646161</contig_pos>
        <strand>+</strand>
        <context>CTACCGCATT[C/T]AAAATTCAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTCAGGGACGTTATGACGACGGTCGAGGACAGGAGTACGCTACCGCATT</left_flank>
        <right_flank>AAAATTCAGTATTGGCGACCTTCATTAAATGCCTGGGCATCCTATAAAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGGGAACGAACATCTAATTTAGAGACCAAGGGAACGTCTTTGACGTGAGAAGGGTGCTTCATCAGGCGTCGTCGTCACTCACGTTAACGCCTCAACAAGCGATTTATCTAGTTTGATTGTTTTGACAGACCGCAGAGACGAAAGCGGCGGACGTCTTCCATAGCTTCACTTCCTAATTGCAATGTGTTGCATTGCGCGCGATAAAAATCTTGATTAGAGGAGCTCATCTGGAGAGGGAGCACGAAACTTGGAATTGAGAGCAATCCTATATTTTCCATTGCAGGGCTCATCAAGAATCTGGAAGTGGCGCCTGGTGTCCAAAGAATCAAATCAACTCCCTTAGTAAGGAATGGCTTCAAATCTCCTTCTCCGTTGATACCGGTACCTTCAAAAAATCGTAAAGAACTATTAAATGTTGAAATTTTTGCAGTCATTACTTCTGTGGAGACTCAGGGACGTTATGACGACGGTCGAGGACAGGAGTACGCTACCGCATTCAAAATTCAGTATTGGCGACCTTCATTAAATGCCTGGGCATCCTATAAAGACGATTTCGAGCTAGAGGTTCGTCCTTTTCATTCAAAATGTCCGCTAATTATCGTATCGGCACCCTTTCGGTCAGCTCGTTTAGATTTATGCGGATTGCACCCATTTCTTAGAATTGTGAATCACAAAAGACTTTTCGCCTTTTTGTCGAACAATAGGGGAATATGACTTTTCTGGTCGTAATACTGTCGCTATACGAGCAACCGTGTTTGGGTGTGAATCAGCAAGGAACACATTTGAATACAGAGAAACCCGTTATCCGAGATTTATTACAAGGTCTTTTCTCAATCCGATTAGATATCAAGCCATTGAAATTCAAATTTCCGCTATATACAAATGCCATCATCATATTCACATTTCCCTTTAGTTTTTTGTTGTGTTTGATGGGAAAAGTGTATGGGACATCAATTTTTTGTTGTGTTTAGTGGATATCAAGAACAGAGGGGTCACGA</canonical>
            <polymorphic>AAAGGGAACGAACATCTAATTTAGAGACCAAGGGAACGTCTTTGACGTGAGAAGGGTGCTTCATCAGGCGTCGTCGTCACTCACGTTAACGCCTCAACAAGCGATTTATCTAGTTTGATTGTTTTGACAGACCGCAGAGACGAAAGCGGCGGACGTCTTCCATAGCTTCACTTCCTAATTGCAATGTGTTGCATTGCGCGCGATAAAAATCTTGATTAGAGGAGCTCATCTGGAGAGGGAGCACGAAACTTGGAATTGAGAGCAATCCTATATTTTCCATTGCAGGGCTCATCAAGAATCTGGAAGTGGCGCCTGGTGTCCAAAGAATCAAATCAACTCCCTTAGTAAGGAATGGCTTCAAATCTCCTTCTCCGTTGATACCGGTACCTTCAAAAAATCGTAAAGAACTATTAAATGTTGAAATTTTTGCAGTCATTACTTCTGTGGAGACTCAGGGACGTTATGACGACGGTCGAGGACAGGAGTACGCTACCGCATTYAAAATTCAGTATTGGCGACCTTCATTAAATGCCTGGGCATCCTATAAAGACGATTTCGAGCTAGAGGTTCGTCCTTTTCATTCAAAATGTCCGCTAATTATCGTATCGGCACCCTTTCGGTCAGCTCGTTTAGATTTATGCGGATTGCACCCATTTCTTAGAATTGTGAATCACAAAAGACTTTTCGCCTTTTTGTCGAACAATAGGGGAATATGACTTTTCTGGTCGTAATACTGTCGCTATACGAGCAACCGTGTTTGGGTGTGAATCAGCAAGGAACACATTTGAATACAGAGAAACCCGTTATCCGAGATTTATTACAAGGTCTTTTCTCAATCCGATTAGATATCAAGCCATTGAAATTCAAATTTCCGCTATATACAAATGCCATCATCATATTCACATTTCCCTTTAGTTTTTTGTTGTGTTTGATGGGAAAAGTGTATGGGACATCAATTTTTTGTTGTGTTTAGTGGATATCAAGAACAGAGGGGTCACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCTCCTTCTCCGTTGATA</pcr_primer_p1>
		<pcr_primer_p2>ATACGATAATTAGCGGACATTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATCTCCTTCTCCGTTGATACCGGTACCTTCAAAAAATCGTAAAGAACTATTAAATGTTGAAATTTTTGCAGTCATTACTTCTGTGGAGACTCAGGGACGTTATGACGACGGTCGAGGACAGGAGTACGCTACCGCATTCAAAATTCAGTATTGGCGACCTTCATTAAATGCCTGGGCATCCTATAAAGACGATTTCGAGCTAGAGGTTCGTCCTTTTCATTCAAAATGTCCGCTAATTATCGTAT</canonical_amplicon>
		<polymorphic_amplicon>AAATCTCCTTCTCCGTTGATACCGGTACCTTCAAAAAATCGTAAAGAACTATTAAATGTTGAAATTTTTGCAGTCATTACTTCTGTGGAGACTCAGGGACGTTATGACGACGGTCGAGGACAGGAGTACGCTACCGCATTYAAAATTCAGTATTGGCGACCTTCATTAAATGCCTGGGCATCCTATAAAGACGATTTCGAGCTAGAGGTTCGTCCTTTTCATTCAAAATGTCCGCTAATTATCGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2538</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>646212</contig_pos>
        <strand>+</strand>
        <context>CCTATAAAGA[C/T]GATTTYGAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATTCAGTATTGGCGACCTTCATTAAATGCCTGGGCATCCTATAAAGA</left_flank>
        <right_flank>GATTTCGAGCTAGAGGTTCGTCCTTTTCATTCAAAATGTCCGCTAATTAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGGTGCTTCATCAGGCGTCGTCGTCACTCACGTTAACGCCTCAACAAGCGATTTATCTAGTTTGATTGTTTTGACAGACCGCAGAGACGAAAGCGGCGGACGTCTTCCATAGCTTCACTTCCTAATTGCAATGTGTTGCATTGCGCGCGATAAAAATCTTGATTAGAGGAGCTCATCTGGAGAGGGAGCACGAAACTTGGAATTGAGAGCAATCCTATATTTTCCATTGCAGGGCTCATCAAGAATCTGGAAGTGGCGCCTGGTGTCCAAAGAATCAAATCAACTCCCTTAGTAAGGAATGGCTTCAAATCTCCTTCTCCGTTGATACCGGTACCTTCAAAAAATCGTAAAGAACTATTAAATGTTGAAATTTTTGCAGTCATTACTTCTGTGGAGACTCAGGGACGTTATGACGACGGTCGAGGACAGGAGTACGCTACCGCATTCAAAATTCAGTATTGGCGACCTTCATTAAATGCCTGGGCATCCTATAAAGACGATTTCGAGCTAGAGGTTCGTCCTTTTCATTCAAAATGTCCGCTAATTATCGTATCGGCACCCTTTCGGTCAGCTCGTTTAGATTTATGCGGATTGCACCCATTTCTTAGAATTGTGAATCACAAAAGACTTTTCGCCTTTTTGTCGAACAATAGGGGAATATGACTTTTCTGGTCGTAATACTGTCGCTATACGAGCAACCGTGTTTGGGTGTGAATCAGCAAGGAACACATTTGAATACAGAGAAACCCGTTATCCGAGATTTATTACAAGGTCTTTTCTCAATCCGATTAGATATCAAGCCATTGAAATTCAAATTTCCGCTATATACAAATGCCATCATCATATTCACATTTCCCTTTAGTTTTTTGTTGTGTTTGATGGGAAAAGTGTATGGGACATCAATTTTTTGTTGTGTTTAGTGGATATCAAGAACAGAGGGGTCACGATAGACACGCTATACATTTTTAATGCCCTTTTCTTTCTGCAAAAGTAGCTCT</canonical>
            <polymorphic>AAGGGTGCTTCATCAGGCGTCGTCGTCACTCACGTTAACGCCTCAACAAGCGATTTATCTAGTTTGATTGTTTTGACAGACCGCAGAGACGAAAGCGGCGGACGTCTTCCATAGCTTCACTTCCTAATTGCAATGTGTTGCATTGCGCGCGATAAAAATCTTGATTAGAGGAGCTCATCTGGAGAGGGAGCACGAAACTTGGAATTGAGAGCAATCCTATATTTTCCATTGCAGGGCTCATCAAGAATCTGGAAGTGGCGCCTGGTGTCCAAAGAATCAAATCAACTCCCTTAGTAAGGAATGGCTTCAAATCTCCTTCTCCGTTGATACCGGTACCTTCAAAAAATCGTAAAGAACTATTAAATGTTGAAATTTTTGCAGTCATTACTTCTGTGGAGACTCAGGGACGTTATGACGACGGTCGAGGACAGGAGTACGCTACCGCATTCAAAATTCAGTATTGGCGACCTTCATTAAATGCCTGGGCATCCTATAAAGAYGATTTCGAGCTAGAGGTTCGTCCTTTTCATTCAAAATGTCCGCTAATTATCGTATCGGCACCCTTTCGGTCAGCTCGTTTAGATTTATGCGGATTGCACCCATTTCTTAGAATTGTGAATCACAAAAGACTTTTCGCCTTTTTGTCGAACAATAGGGGAATATGACTTTTCTGGTCGTAATACTGTCGCTATACGAGCAACCGTGTTTGGGTGTGAATCAGCAAGGAACACATTTGAATACAGAGAAACCCGTTATCCGAGATTTATTACAAGGTCTTTTCTCAATCCGATTAGATATCAAGCCATTGAAATTCAAATTTCCGCTATATACAAATGCCATCATCATATTCACATTTCCCTTTAGTTTTTTGTTGTGTTTGATGGGAAAAGTGTATGGGACATCAATTTTTTGTTGTGTTTAGTGGATATCAAGAACAGAGGGGTCACGATAGACACGCTATACATTTTTAATGCCCTTTTCTTTCTGCAAAAGTAGCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCTCCTTCTCCGTTGATA</pcr_primer_p1>
		<pcr_primer_p2>ATACGATAATTAGCGGACATTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATCTCCTTCTCCGTTGATACCGGTACCTTCAAAAAATCGTAAAGAACTATTAAATGTTGAAATTTTTGCAGTCATTACTTCTGTGGAGACTCAGGGACGTTATGACGACGGTCGAGGACAGGAGTACGCTACCGCATTCAAAATTCAGTATTGGCGACCTTCATTAAATGCCTGGGCATCCTATAAAGACGATTTCGAGCTAGAGGTTCGTCCTTTTCATTCAAAATGTCCGCTAATTATCGTAT</canonical_amplicon>
		<polymorphic_amplicon>AAATCTCCTTCTCCGTTGATACCGGTACCTTCAAAAAATCGTAAAGAACTATTAAATGTTGAAATTTTTGCAGTCATTACTTCTGTGGAGACTCAGGGACGTTATGACGACGGTCGAGGACAGGAGTACGCTACCGCATTCAAAATTCAGTATTGGCGACCTTCATTAAATGCCTGGGCATCCTATAAAGAYGATTTCGAGCTAGAGGTTCGTCCTTTTCATTCAAAATGTCCGCTAATTATCGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2539</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>646218</contig_pos>
        <strand>+</strand>
        <context>AAGAYGATTT[C/T]GAGCTAGAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGTATTGGCGACCTTCATTAAATGCCTGGGCATCCTATAAAGACGATTT</left_flank>
        <right_flank>GAGCTAGAGGTTCGTCCTTTTCATTCAAAATGTCCGCTAATTATCGTATC</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTTCATCAGGCGTCGTCGTCACTCACGTTAACGCCTCAACAAGCGATTTATCTAGTTTGATTGTTTTGACAGACCGCAGAGACGAAAGCGGCGGACGTCTTCCATAGCTTCACTTCCTAATTGCAATGTGTTGCATTGCGCGCGATAAAAATCTTGATTAGAGGAGCTCATCTGGAGAGGGAGCACGAAACTTGGAATTGAGAGCAATCCTATATTTTCCATTGCAGGGCTCATCAAGAATCTGGAAGTGGCGCCTGGTGTCCAAAGAATCAAATCAACTCCCTTAGTAAGGAATGGCTTCAAATCTCCTTCTCCGTTGATACCGGTACCTTCAAAAAATCGTAAAGAACTATTAAATGTTGAAATTTTTGCAGTCATTACTTCTGTGGAGACTCAGGGACGTTATGACGACGGTCGAGGACAGGAGTACGCTACCGCATTCAAAATTCAGTATTGGCGACCTTCATTAAATGCCTGGGCATCCTATAAAGACGATTTCGAGCTAGAGGTTCGTCCTTTTCATTCAAAATGTCCGCTAATTATCGTATCGGCACCCTTTCGGTCAGCTCGTTTAGATTTATGCGGATTGCACCCATTTCTTAGAATTGTGAATCACAAAAGACTTTTCGCCTTTTTGTCGAACAATAGGGGAATATGACTTTTCTGGTCGTAATACTGTCGCTATACGAGCAACCGTGTTTGGGTGTGAATCAGCAAGGAACACATTTGAATACAGAGAAACCCGTTATCCGAGATTTATTACAAGGTCTTTTCTCAATCCGATTAGATATCAAGCCATTGAAATTCAAATTTCCGCTATATACAAATGCCATCATCATATTCACATTTCCCTTTAGTTTTTTGTTGTGTTTGATGGGAAAAGTGTATGGGACATCAATTTTTTGTTGTGTTTAGTGGATATCAAGAACAGAGGGGTCACGATAGACACGCTATACATTTTTAATGCCCTTTTCTTTCTGCAAAAGTAGCTCTCCTTGT</canonical>
            <polymorphic>GCTTCATCAGGCGTCGTCGTCACTCACGTTAACGCCTCAACAAGCGATTTATCTAGTTTGATTGTTTTGACAGACCGCAGAGACGAAAGCGGCGGACGTCTTCCATAGCTTCACTTCCTAATTGCAATGTGTTGCATTGCGCGCGATAAAAATCTTGATTAGAGGAGCTCATCTGGAGAGGGAGCACGAAACTTGGAATTGAGAGCAATCCTATATTTTCCATTGCAGGGCTCATCAAGAATCTGGAAGTGGCGCCTGGTGTCCAAAGAATCAAATCAACTCCCTTAGTAAGGAATGGCTTCAAATCTCCTTCTCCGTTGATACCGGTACCTTCAAAAAATCGTAAAGAACTATTAAATGTTGAAATTTTTGCAGTCATTACTTCTGTGGAGACTCAGGGACGTTATGACGACGGTCGAGGACAGGAGTACGCTACCGCATTCAAAATTCAGTATTGGCGACCTTCATTAAATGCCTGGGCATCCTATAAAGACGATTTYGAGCTAGAGGTTCGTCCTTTTCATTCAAAATGTCCGCTAATTATCGTATCGGCACCCTTTCGGTCAGCTCGTTTAGATTTATGCGGATTGCACCCATTTCTTAGAATTGTGAATCACAAAAGACTTTTCGCCTTTTTGTCGAACAATAGGGGAATATGACTTTTCTGGTCGTAATACTGTCGCTATACGAGCAACCGTGTTTGGGTGTGAATCAGCAAGGAACACATTTGAATACAGAGAAACCCGTTATCCGAGATTTATTACAAGGTCTTTTCTCAATCCGATTAGATATCAAGCCATTGAAATTCAAATTTCCGCTATATACAAATGCCATCATCATATTCACATTTCCCTTTAGTTTTTTGTTGTGTTTGATGGGAAAAGTGTATGGGACATCAATTTTTTGTTGTGTTTAGTGGATATCAAGAACAGAGGGGTCACGATAGACACGCTATACATTTTTAATGCCCTTTTCTTTCTGCAAAAGTAGCTCTCCTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>417 360 140 83</canonical_bands>
                <polymorphic_bands>417 360 223</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTCAGTATTGGCGACCT</pcr_primer_p1>
		<pcr_primer_p2>TGCTCGTATAGCGACAGTATTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATTCAGTATTGGCGACCTTCATTAAATGCCTGGGCATCCTATAAAGACGATTTCGAGCTAGAGGTTCGTCCTTTTCATTCAAAATGTCCGCTAATTATCGTATCGGCACCCTTTCGGTCAGCTCGTTTAGATTTATGCGGATTGCACCCATTTCTTAGAATTGTGAATCACAAAAGACTTTTCGCCTTTTTGTCGAACAATAGGGGAATATGACTTTTCTGGTCGTAATACTGTCGCTATACGAGCA</canonical_amplicon>
		<polymorphic_amplicon>AAATTCAGTATTGGCGACCTTCATTAAATGCCTGGGCATCCTATAAAGACGATTTYGAGCTAGAGGTTCGTCCTTTTCATTCAAAATGTCCGCTAATTATCGTATCGGCACCCTTTCGGTCAGCTCGTTTAGATTTATGCGGATTGCACCCATTTCTTAGAATTGTGAATCACAAAAGACTTTTCGCCTTTTTGTCGAACAATAGGGGAATATGACTTTTCTGGTCGTAATACTGTCGCTATACGAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2540</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>646284</contig_pos>
        <strand>+</strand>
        <context>CCTTTCGGTC[A/C]GCTCGTTTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCTTTTCATTCAAAATGTCCGCTAATTATCGTATCGGCACCCTTTCGGTC</left_flank>
        <right_flank>GCTCGTTTAGATTTATGCGGATTGCACCCATTTCTTAGAATTGTGAATCA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGACAGACCGCAGAGACGAAAGCGGCGGACGTCTTCCATAGCTTCACTTCCTAATTGCAATGTGTTGCATTGCGCGCGATAAAAATCTTGATTAGAGGAGCTCATCTGGAGAGGGAGCACGAAACTTGGAATTGAGAGCAATCCTATATTTTCCATTGCAGGGCTCATCAAGAATCTGGAAGTGGCGCCTGGTGTCCAAAGAATCAAATCAACTCCCTTAGTAAGGAATGGCTTCAAATCTCCTTCTCCGTTGATACCGGTACCTTCAAAAAATCGTAAAGAACTATTAAATGTTGAAATTTTTGCAGTCATTACTTCTGTGGAGACTCAGGGACGTTATGACGACGGTCGAGGACAGGAGTACGCTACCGCATTCAAAATTCAGTATTGGCGACCTTCATTAAATGCCTGGGCATCCTATAAAGACGATTTCGAGCTAGAGGTTCGTCCTTTTCATTCAAAATGTCCGCTAATTATCGTATCGGCACCCTTTCGGTCAGCTCGTTTAGATTTATGCGGATTGCACCCATTTCTTAGAATTGTGAATCACAAAAGACTTTTCGCCTTTTTGTCGAACAATAGGGGAATATGACTTTTCTGGTCGTAATACTGTCGCTATACGAGCAACCGTGTTTGGGTGTGAATCAGCAAGGAACACATTTGAATACAGAGAAACCCGTTATCCGAGATTTATTACAAGGTCTTTTCTCAATCCGATTAGATATCAAGCCATTGAAATTCAAATTTCCGCTATATACAAATGCCATCATCATATTCACATTTCCCTTTAGTTTTTTGTTGTGTTTGATGGGAAAAGTGTATGGGACATCAATTTTTTGTTGTGTTTAGTGGATATCAAGAACAGAGGGGTCACGATAGACACGCTATACATTTTTAATGCCCTTTTCTTTCTGCAAAAGTAGCTCTCCTTGTACACCAGTACCACCACTCAGGGGTTCGAAATTGGTAGTTGGGGTAAATTAGTTGAAATTTGGACTG</canonical>
            <polymorphic>TTGACAGACCGCAGAGACGAAAGCGGCGGACGTCTTCCATAGCTTCACTTCCTAATTGCAATGTGTTGCATTGCGCGCGATAAAAATCTTGATTAGAGGAGCTCATCTGGAGAGGGAGCACGAAACTTGGAATTGAGAGCAATCCTATATTTTCCATTGCAGGGCTCATCAAGAATCTGGAAGTGGCGCCTGGTGTCCAAAGAATCAAATCAACTCCCTTAGTAAGGAATGGCTTCAAATCTCCTTCTCCGTTGATACCGGTACCTTCAAAAAATCGTAAAGAACTATTAAATGTTGAAATTTTTGCAGTCATTACTTCTGTGGAGACTCAGGGACGTTATGACGACGGTCGAGGACAGGAGTACGCTACCGCATTCAAAATTCAGTATTGGCGACCTTCATTAAATGCCTGGGCATCCTATAAAGACGATTTCGAGCTAGAGGTTCGTCCTTTTCATTCAAAATGTCCGCTAATTATCGTATCGGCACCCTTTCGGTCMGCTCGTTTAGATTTATGCGGATTGCACCCATTTCTTAGAATTGTGAATCACAAAAGACTTTTCGCCTTTTTGTCGAACAATAGGGGAATATGACTTTTCTGGTCGTAATACTGTCGCTATACGAGCAACCGTGTTTGGGTGTGAATCAGCAAGGAACACATTTGAATACAGAGAAACCCGTTATCCGAGATTTATTACAAGGTCTTTTCTCAATCCGATTAGATATCAAGCCATTGAAATTCAAATTTCCGCTATATACAAATGCCATCATCATATTCACATTTCCCTTTAGTTTTTTGTTGTGTTTGATGGGAAAAGTGTATGGGACATCAATTTTTTGTTGTGTTTAGTGGATATCAAGAACAGAGGGGTCACGATAGACACGCTATACATTTTTAATGCCCTTTTCTTTCTGCAAAAGTAGCTCTCCTTGTACACCAGTACCACCACTCAGGGGTTCGAAATTGGTAGTTGGGGTAAATTAGTTGAAATTTGGACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>423 336 76 64 59 42</canonical_bands>
                <polymorphic_bands>487 336 76 59 42</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>229 205 194 76 68 64 63 59 42</canonical_bands>
                <polymorphic_bands>293 205 194 76 68 63 59 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGAGGTTCGTCCTTTTCAT</pcr_primer_p1>
		<pcr_primer_p2>GATAACGGGTTTCTCTGTATTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTAGAGGTTCGTCCTTTTCATTCAAAATGTCCGCTAATTATCGTATCGGCACCCTTTCGGTCAGCTCGTTTAGATTTATGCGGATTGCACCCATTTCTTAGAATTGTGAATCACAAAAGACTTTTCGCCTTTTTGTCGAACAATAGGGGAATATGACTTTTCTGGTCGTAATACTGTCGCTATACGAGCAACCGTGTTTGGGTGTGAATCAGCAAGGAACACATTTGAATACAGAGAAACCCGTTATC</canonical_amplicon>
		<polymorphic_amplicon>CTAGAGGTTCGTCCTTTTCATTCAAAATGTCCGCTAATTATCGTATCGGCACCCTTTCGGTCMGCTCGTTTAGATTTATGCGGATTGCACCCATTTCTTAGAATTGTGAATCACAAAAGACTTTTCGCCTTTTTGTCGAACAATAGGGGAATATGACTTTTCTGGTCGTAATACTGTCGCTATACGAGCAACCGTGTTTGGGTGTGAATCAGCAAGGAACACATTTGAATACAGAGAAACCCGTTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2541</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>647910</contig_pos>
        <strand>+</strand>
        <context>GAGTAGAAGT[C/T]TACGGATGCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGTCCCTATATCCAACTCGACTAGAACTGTCTGCATGCGAGTAGAAGT</left_flank>
        <right_flank>TACGGATGCCCATTTGATGGTAAGTTATTCTATCTTTTCATTTCACTCTG</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCATATAATCTGAAAAATGCAGAGACTAAACAAAATAGAGCTTCAGTTCTGTAATGACATTTTTTTGTAACAACTCCAGCCAAGGCGGTTATAAAATAGCACAATTATCAGCTCAATTCTATTTTTGCCATTTTAGGCACTTTTTTTGGTGACAAAGGTTTATCTTAAAGAAATCGAGCTGGTATCATCTGAAAAAAAGCTTATCCCATAGTATTCTGTAAACCACATAATCAGATGGCAATGTAGTTCTCTATCTCCCACAAAAACAGAGCCAAACATAATTTTTTTTGTGTAATACTGTGAATTCAATTTTTTCGAAATTTGAACTCAATCCCACTTTAGCTGTTCTTCACAAAATGCTTTTTTTCAGACAATCCCTGCAAACAACAACACTGGAAATGCAGTCAGACGAGTTTTGGATAGAGCCATCATTGCCAGACGCATACGAATTGTCCCTATATCCAACTCGACTAGAACTGTCTGCATGCGAGTAGAAGTCTACGGATGCCCATTTGATGGTAAGTTATTCTATCTTTTCATTTCACTCTGAAACATCTCCCATTTACAGATAGTGTGATTTCATACGGCATTGAACAGGGCGACTTGCAGTCGGGCATTTCTTATCACGACTTTTCATACGATGGCAATCTCGCCGACTCGCCACACCTAACCGGCGGAATTGGCAAGTTGTACGATAATGAGGTGGGAGAAAAGGATGTTTTTGTTAACCATCACAAATGGGTTGGATGGAGAAGAAAGCGAAGCGGTAGTGTGAAGATGTCCTTCGAGTTTGGAGAGTTGAGAAACATCTCGGGAGTTTTGATTCATACTGCAAACGAGTTCAAAAAGAGCGCGAAAGCATTTTCTTCGGTCAGCATACTGTTCTCCAATGATGGAAAGAAATACTCGGACAATATCGTACACTTCAATAATCCAGACGACACGGGGTCCGAGGCTCCTCGTTGGATTAGAATTCCAGTTCCCAATCAGATTGCCAAA</canonical>
            <polymorphic>TTCATATAATCTGAAAAATGCAGAGACTAAACAAAATAGAGCTTCAGTTCTGTAATGACATTTTTTTGTAACAACTCCAGCCAAGGCGGTTATAAAATAGCACAATTATCAGCTCAATTCTATTTTTGCCATTTTAGGCACTTTTTTTGGTGACAAAGGTTTATCTTAAAGAAATCGAGCTGGTATCATCTGAAAAAAAGCTTATCCCATAGTATTCTGTAAACCACATAATCAGATGGCAATGTAGTTCTCTATCTCCCACAAAAACAGAGCCAAACATAATTTTTTTTGTGTAATACTGTGAATTCAATTTTTTCGAAATTTGAACTCAATCCCACTTTAGCTGTTCTTCACAAAATGCTTTTTTTCAGACAATCCCTGCAAACAACAACACTGGAAATGCAGTCAGACGAGTTTTGGATAGAGCCATCATTGCCAGACGCATACGAATTGTCCCTATATCCAACTCGACTAGAACTGTCTGCATGCGAGTAGAAGTYTACGGATGCCCATTTGATGGTAAGTTATTCTATCTTTTCATTTCACTCTGAAACATCTCCCATTTACAGATAGTGTGATTTCATACGGCATTGAACAGGGCGACTTGCAGTCGGGCATTTCTTATCACGACTTTTCATACGATGGCAATCTCGCCGACTCGCCACACCTAACCGGCGGAATTGGCAAGTTGTACGATAATGAGGTGGGAGAAAAGGATGTTTTTGTTAACCATCACAAATGGGTTGGATGGAGAAGAAAGCGAAGCGGTAGTGTGAAGATGTCCTTCGAGTTTGGAGAGTTGAGAAACATCTCGGGAGTTTTGATTCATACTGCAAACGAGTTCAAAAAGAGCGCGAAAGCATTTTCTTCGGTCAGCATACTGTTCTCCAATGATGGAAAGAAATACTCGGACAATATCGTACACTTCAATAATCCAGACGACACGGGGTCCGAGGCTCCTCGTTGGATTAGAATTCCAGTTCCCAATCAGATTGCCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTAGCTGTTCTTCACAAAATG</pcr_primer_p1>
		<pcr_primer_p2>CCGTATGAAATCACACTATCTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTTTAGCTGTTCTTCACAAAATGCTTTTTTTCAGACAATCCCTGCAAACAACAACACTGGAAATGCAGTCAGACGAGTTTTGGATAGAGCCATCATTGCCAGACGCATACGAATTGTCCCTATATCCAACTCGACTAGAACTGTCTGCATGCGAGTAGAAGTCTACGGATGCCCATTTGATGGTAAGTTATTCTATCTTTTCATTTCACTCTGAAACATCTCCCATTTACAGATAGTGTGATTTCATACGG</canonical_amplicon>
		<polymorphic_amplicon>CTTTAGCTGTTCTTCACAAAATGCTTTTTTTCAGACAATCCCTGCAAACAACAACACTGGAAATGCAGTCAGACGAGTTTTGGATAGAGCCATCATTGCCAGACGCATACGAATTGTCCCTATATCCAACTCGACTAGAACTGTCTGCATGCGAGTAGAAGTYTACGGATGCCCATTTGATGGTAAGTTATTCTATCTTTTCATTTCACTCTGAAACATCTCCCATTTACAGATAGTGTGATTTCATACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2542</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>647874</contig_pos>
        <strand>+</strand>
        <context>TCCCTATATC[C/G]AACTCGACTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTTTTGGATAGAGCCATCATTGCCAGACGCATACGAATTGTCCCTATATC</left_flank>
        <right_flank>AACTCGACTAGAACTGTCTGCATGCGAGTAGAAGTCTACGGATGCCCATT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAGTTAGGCTTTCTGAAATAGCAGTACAGAATGTTTCATATAATCTGAAAAATGCAGAGACTAAACAAAATAGAGCTTCAGTTCTGTAATGACATTTTTTTGTAACAACTCCAGCCAAGGCGGTTATAAAATAGCACAATTATCAGCTCAATTCTATTTTTGCCATTTTAGGCACTTTTTTTGGTGACAAAGGTTTATCTTAAAGAAATCGAGCTGGTATCATCTGAAAAAAAGCTTATCCCATAGTATTCTGTAAACCACATAATCAGATGGCAATGTAGTTCTCTATCTCCCACAAAAACAGAGCCAAACATAATTTTTTTTGTGTAATACTGTGAATTCAATTTTTTCGAAATTTGAACTCAATCCCACTTTAGCTGTTCTTCACAAAATGCTTTTTTTCAGACAATCCCTGCAAACAACAACACTGGAAATGCAGTCAGACGAGTTTTGGATAGAGCCATCATTGCCAGACGCATACGAATTGTCCCTATATCCAACTCGACTAGAACTGTCTGCATGCGAGTAGAAGTCTACGGATGCCCATTTGATGGTAAGTTATTCTATCTTTTCATTTCACTCTGAAACATCTCCCATTTACAGATAGTGTGATTTCATACGGCATTGAACAGGGCGACTTGCAGTCGGGCATTTCTTATCACGACTTTTCATACGATGGCAATCTCGCCGACTCGCCACACCTAACCGGCGGAATTGGCAAGTTGTACGATAATGAGGTGGGAGAAAAGGATGTTTTTGTTAACCATCACAAATGGGTTGGATGGAGAAGAAAGCGAAGCGGTAGTGTGAAGATGTCCTTCGAGTTTGGAGAGTTGAGAAACATCTCGGGAGTTTTGATTCATACTGCAAACGAGTTCAAAAAGAGCGCGAAAGCATTTTCTTCGGTCAGCATACTGTTCTCCAATGATGGAAAGAAATACTCGGACAATATCGTACACTTCAATAATCCAGACGACACGGGGTCCGAGGCTCCTCGT</canonical>
            <polymorphic>TTTAGTTAGGCTTTCTGAAATAGCAGTACAGAATGTTTCATATAATCTGAAAAATGCAGAGACTAAACAAAATAGAGCTTCAGTTCTGTAATGACATTTTTTTGTAACAACTCCAGCCAAGGCGGTTATAAAATAGCACAATTATCAGCTCAATTCTATTTTTGCCATTTTAGGCACTTTTTTTGGTGACAAAGGTTTATCTTAAAGAAATCGAGCTGGTATCATCTGAAAAAAAGCTTATCCCATAGTATTCTGTAAACCACATAATCAGATGGCAATGTAGTTCTCTATCTCCCACAAAAACAGAGCCAAACATAATTTTTTTTGTGTAATACTGTGAATTCAATTTTTTCGAAATTTGAACTCAATCCCACTTTAGCTGTTCTTCACAAAATGCTTTTTTTCAGACAATCCCTGCAAACAACAACACTGGAAATGCAGTCAGACGAGTTTTGGATAGAGCCATCATTGCCAGACGCATACGAATTGTCCCTATATCSAACTCGACTAGAACTGTCTGCATGCGAGTAGAAGTCTACGGATGCCCATTTGATGGTAAGTTATTCTATCTTTTCATTTCACTCTGAAACATCTCCCATTTACAGATAGTGTGATTTCATACGGCATTGAACAGGGCGACTTGCAGTCGGGCATTTCTTATCACGACTTTTCATACGATGGCAATCTCGCCGACTCGCCACACCTAACCGGCGGAATTGGCAAGTTGTACGATAATGAGGTGGGAGAAAAGGATGTTTTTGTTAACCATCACAAATGGGTTGGATGGAGAAGAAAGCGAAGCGGTAGTGTGAAGATGTCCTTCGAGTTTGGAGAGTTGAGAAACATCTCGGGAGTTTTGATTCATACTGCAAACGAGTTCAAAAAGAGCGCGAAAGCATTTTCTTCGGTCAGCATACTGTTCTCCAATGATGGAAAGAAATACTCGGACAATATCGTACACTTCAATAATCCAGACGACACGGGGTCCGAGGCTCCTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTAGCTGTTCTTCACAAAATG</pcr_primer_p1>
		<pcr_primer_p2>CCGTATGAAATCACACTATCTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTTTAGCTGTTCTTCACAAAATGCTTTTTTTCAGACAATCCCTGCAAACAACAACACTGGAAATGCAGTCAGACGAGTTTTGGATAGAGCCATCATTGCCAGACGCATACGAATTGTCCCTATATCCAACTCGACTAGAACTGTCTGCATGCGAGTAGAAGTCTACGGATGCCCATTTGATGGTAAGTTATTCTATCTTTTCATTTCACTCTGAAACATCTCCCATTTACAGATAGTGTGATTTCATACGG</canonical_amplicon>
		<polymorphic_amplicon>CTTTAGCTGTTCTTCACAAAATGCTTTTTTTCAGACAATCCCTGCAAACAACAACACTGGAAATGCAGTCAGACGAGTTTTGGATAGAGCCATCATTGCCAGACGCATACGAATTGTCCCTATATCSAACTCGACTAGAACTGTCTGCATGCGAGTAGAAGTCTACGGATGCCCATTTGATGGTAAGTTATTCTATCTTTTCATTTCACTCTGAAACATCTCCCATTTACAGATAGTGTGATTTCATACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2543</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>647823</contig_pos>
        <strand>+</strand>
        <context>CAGTCAGACG[A/G]GTTTTGGATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTCAGACAATCCCTGCAAACAACAACACTGGAAATGCAGTCAGACG</left_flank>
        <right_flank>GTTTTGGATAGAGCCATCATTGCCAGACGCATACGAATTGTCCCTATATC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACTGAACTAATTTATATTATGTTTTAAATTTTTCAGAGAGGCAAACAACTTTAGTTAGGCTTTCTGAAATAGCAGTACAGAATGTTTCATATAATCTGAAAAATGCAGAGACTAAACAAAATAGAGCTTCAGTTCTGTAATGACATTTTTTTGTAACAACTCCAGCCAAGGCGGTTATAAAATAGCACAATTATCAGCTCAATTCTATTTTTGCCATTTTAGGCACTTTTTTTGGTGACAAAGGTTTATCTTAAAGAAATCGAGCTGGTATCATCTGAAAAAAAGCTTATCCCATAGTATTCTGTAAACCACATAATCAGATGGCAATGTAGTTCTCTATCTCCCACAAAAACAGAGCCAAACATAATTTTTTTTGTGTAATACTGTGAATTCAATTTTTTCGAAATTTGAACTCAATCCCACTTTAGCTGTTCTTCACAAAATGCTTTTTTTCAGACAATCCCTGCAAACAACAACACTGGAAATGCAGTCAGACGAGTTTTGGATAGAGCCATCATTGCCAGACGCATACGAATTGTCCCTATATCCAACTCGACTAGAACTGTCTGCATGCGAGTAGAAGTCTACGGATGCCCATTTGATGGTAAGTTATTCTATCTTTTCATTTCACTCTGAAACATCTCCCATTTACAGATAGTGTGATTTCATACGGCATTGAACAGGGCGACTTGCAGTCGGGCATTTCTTATCACGACTTTTCATACGATGGCAATCTCGCCGACTCGCCACACCTAACCGGCGGAATTGGCAAGTTGTACGATAATGAGGTGGGAGAAAAGGATGTTTTTGTTAACCATCACAAATGGGTTGGATGGAGAAGAAAGCGAAGCGGTAGTGTGAAGATGTCCTTCGAGTTTGGAGAGTTGAGAAACATCTCGGGAGTTTTGATTCATACTGCAAACGAGTTCAAAAAGAGCGCGAAAGCATTTTCTTCGGTCAGCATACTGTTCTCCAATGATGGAAAGAAATACTCGGAC</canonical>
            <polymorphic>GTACTGAACTAATTTATATTATGTTTTAAATTTTTCAGAGAGGCAAACAACTTTAGTTAGGCTTTCTGAAATAGCAGTACAGAATGTTTCATATAATCTGAAAAATGCAGAGACTAAACAAAATAGAGCTTCAGTTCTGTAATGACATTTTTTTGTAACAACTCCAGCCAAGGCGGTTATAAAATAGCACAATTATCAGCTCAATTCTATTTTTGCCATTTTAGGCACTTTTTTTGGTGACAAAGGTTTATCTTAAAGAAATCGAGCTGGTATCATCTGAAAAAAAGCTTATCCCATAGTATTCTGTAAACCACATAATCAGATGGCAATGTAGTTCTCTATCTCCCACAAAAACAGAGCCAAACATAATTTTTTTTGTGTAATACTGTGAATTCAATTTTTTCGAAATTTGAACTCAATCCCACTTTAGCTGTTCTTCACAAAATGCTTTTTTTCAGACAATCCCTGCAAACAACAACACTGGAAATGCAGTCAGACGRGTTTTGGATAGAGCCATCATTGCCAGACGCATACGAATTGTCCCTATATCCAACTCGACTAGAACTGTCTGCATGCGAGTAGAAGTCTACGGATGCCCATTTGATGGTAAGTTATTCTATCTTTTCATTTCACTCTGAAACATCTCCCATTTACAGATAGTGTGATTTCATACGGCATTGAACAGGGCGACTTGCAGTCGGGCATTTCTTATCACGACTTTTCATACGATGGCAATCTCGCCGACTCGCCACACCTAACCGGCGGAATTGGCAAGTTGTACGATAATGAGGTGGGAGAAAAGGATGTTTTTGTTAACCATCACAAATGGGTTGGATGGAGAAGAAAGCGAAGCGGTAGTGTGAAGATGTCCTTCGAGTTTGGAGAGTTGAGAAACATCTCGGGAGTTTTGATTCATACTGCAAACGAGTTCAAAAAGAGCGCGAAAGCATTTTCTTCGGTCAGCATACTGTTCTCCAATGATGGAAAGAAATACTCGGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTAGCTGTTCTTCACAAAATG</pcr_primer_p1>
		<pcr_primer_p2>CCGTATGAAATCACACTATCTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTTTAGCTGTTCTTCACAAAATGCTTTTTTTCAGACAATCCCTGCAAACAACAACACTGGAAATGCAGTCAGACGAGTTTTGGATAGAGCCATCATTGCCAGACGCATACGAATTGTCCCTATATCCAACTCGACTAGAACTGTCTGCATGCGAGTAGAAGTCTACGGATGCCCATTTGATGGTAAGTTATTCTATCTTTTCATTTCACTCTGAAACATCTCCCATTTACAGATAGTGTGATTTCATACGG</canonical_amplicon>
		<polymorphic_amplicon>CTTTAGCTGTTCTTCACAAAATGCTTTTTTTCAGACAATCCCTGCAAACAACAACACTGGAAATGCAGTCAGACGRGTTTTGGATAGAGCCATCATTGCCAGACGCATACGAATTGTCCCTATATCCAACTCGACTAGAACTGTCTGCATGCGAGTAGAAGTCTACGGATGCCCATTTGATGGTAAGTTATTCTATCTTTTCATTTCACTCTGAAACATCTCCCATTTACAGATAGTGTGATTTCATACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2544</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>679238</contig_pos>
        <strand>+</strand>
        <context>TTTCAAACTA[A/G]CATTCTCTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATCTGGTCAGCAGATTGAATACAATATTTTCTCTGTTTTTCAAACTA</left_flank>
        <right_flank>CATTCTCTTCTCATTACTAGCTCTCTAAAATTCACCACGTAACCAATAGT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTAAAATAGATCGAAACCAGATAAGCGCTTTTGAAGTGACACAACTCCAATTTAAGTGCTAATTAACTCATTTCAAGATACTTGCGGCTAAATGTGAGACAGGGAATTTCAAAAAGATTTTCAGCCTTATTTCCAGTAATTATTTTTTCTGTTTTCAAAAATTTTTGGATTCAACAAAAAAATTATAAAAAGCTTGCAAATCTCAGCAGAATGAAATTTCGCAAAAAAATTTGCAAATGCAAAAATCAAAAATCTGTTCAGTACATATATTTTGAAATTTTCAGACGAATCCGAAAATTTGAACTACTTGTTCACAACTTCAAAATTTATCTTTCACTGAATAAGTCAAATTATAACTTTTTGTAATCCTGTTTTACCGAAATTTCAATTATTTTGTGATTCTGAATTTTGTAGTTTCTCAGAACCCCATTAAAGACTTCATCACCAAAAATCTGGTCAGCAGATTGAATACAATATTTTCTCTGTTTTTCAAACTAGCATTCTCTTCTCATTACTAGCTCTCTAAAATTCACCACGTAACCAATAGTTTCCTTTATGCTGTCTTTTCTTGAAAAACTTTTTTCATTCTTGTTTTTTCAGTTGCTAGAGAAAAGCACTTCCCTTCTCGAAAAAAAACTCGCAACCATTTTTCTCGTTTTCCTTGACTTTTTTTTTCACATGTGGCACCGATTCTGTCCGTCCGGATGGATCGCTTCCGGCGGGTTCTCCCCATTTTCACACAGAATCCAAAGTGTTTTTCCGTTGAAATGAGAAGAAGGAGGAAGATTTTGAAAATCTCTCGACGTGAATTTCATTTCCGTCACTCCTTCTTGAAACCAAATGAAGCGTCTCGTTGTCGTCGACGTCTTATATTATAGGTTATTTTTAGAGCCAAAATCTCTCTATTTGTTTCAGATTTGAGTCTTCCTATATAGAAAAATGAAGCCCCAACATAGTTCAAATTCTACAATTGAACATGAAACGTAAGAGAGACAAAA</canonical>
            <polymorphic>TTTTAAAATAGATCGAAACCAGATAAGCGCTTTTGAAGTGACACAACTCCAATTTAAGTGCTAATTAACTCATTTCAAGATACTTGCGGCTAAATGTGAGACAGGGAATTTCAAAAAGATTTTCAGCCTTATTTCCAGTAATTATTTTTTCTGTTTTCAAAAATTTTTGGATTCAACAAAAAAATTATAAAAAGCTTGCAAATCTCAGCAGAATGAAATTTCGCAAAAAAATTTGCAAATGCAAAAATCAAAAATCTGTTCAGTACATATATTTTGAAATTTTCAGACGAATCCGAAAATTTGAACTACTTGTTCACAACTTCAAAATTTATCTTTCACTGAATAAGTCAAATTATAACTTTTTGTAATCCTGTTTTACCGAAATTTCAATTATTTTGTGATTCTGAATTTTGTAGTTTCTCAGAACCCCATTAAAGACTTCATCACCAAAAATCTGGTCAGCAGATTGAATACAATATTTTCTCTGTTTTTCAAACTARCATTCTCTTCTCATTACTAGCTCTCTAAAATTCACCACGTAACCAATAGTTTCCTTTATGCTGTCTTTTCTTGAAAAACTTTTTTCATTCTTGTTTTTTCAGTTGCTAGAGAAAAGCACTTCCCTTCTCGAAAAAAAACTCGCAACCATTTTTCTCGTTTTCCTTGACTTTTTTTTTCACATGTGGCACCGATTCTGTCCGTCCGGATGGATCGCTTCCGGCGGGTTCTCCCCATTTTCACACAGAATCCAAAGTGTTTTTCCGTTGAAATGAGAAGAAGGAGGAAGATTTTGAAAATCTCTCGACGTGAATTTCATTTCCGTCACTCCTTCTTGAAACCAAATGAAGCGTCTCGTTGTCGTCGACGTCTTATATTATAGGTTATTTTTAGAGCCAAAATCTCTCTATTTGTTTCAGATTTGAGTCTTCCTATATAGAAAAATGAAGCCCCAACATAGTTCAAATTCTACAATTGAACATGAAACGTAAGAGAGACAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>497 394 89 20</canonical_bands>
                <polymorphic_bands>517 394 89</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACCGAAATTTCAATTATTTTG</pcr_primer_p1>
		<pcr_primer_p2>GAAGTGCTTTTCTCTAGCAACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTACCGAAATTTCAATTATTTTGTGATTCTGAATTTTGTAGTTTCTCAGAACCCCATTAAAGACTTCATCACCAAAAATCTGGTCAGCAGATTGAATACAATATTTTCTCTGTTTTTCAAACTAGCATTCTCTTCTCATTACTAGCTCTCTAAAATTCACCACGTAACCAATAGTTTCCTTTATGCTGTCTTTTCTTGAAAAACTTTTTTCATTCTTGTTTTTTCAGTTGCTAGAGAAAAGCACTTC</canonical_amplicon>
		<polymorphic_amplicon>TTACCGAAATTTCAATTATTTTGTGATTCTGAATTTTGTAGTTTCTCAGAACCCCATTAAAGACTTCATCACCAAAAATCTGGTCAGCAGATTGAATACAATATTTTCTCTGTTTTTCAAACTARCATTCTCTTCTCATTACTAGCTCTCTAAAATTCACCACGTAACCAATAGTTTCCTTTATGCTGTCTTTTCTTGAAAAACTTTTTTCATTCTTGTTTTTTCAGTTGCTAGAGAAAAGCACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2545</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>684763</contig_pos>
        <strand></strand>
        <context>CCAATTTTCT[A/C]GCAATTACCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATTTTCCTAGAAAGCCAAAAAAAGAAAAGAAATTCAATTCCAATTTTCT</left_flank>
        <right_flank>GCAATTACCTATCAATCTTTCTCAACAATACAAATCCAATTAAGGAAGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTAACCTTTTTTTACGTAGTAAATACCTAGGTTAATTTTAGTATGTGTCCCTCCCATTCTAAGATTAGCAGTGTCGCAAAAAAGAAGCATCGCACGTCATCATCATCATCTTTTTTTTACATGCATTGCTATAATCTGAAAGTCATTTAGGTCTACAAAATGTCCAACAAAACAATCTTGCTCAATTAATGGCTCTGTCCTTTTTATTCCAAATTACACTCGTTTTCGATTTGAGTGTTCTTATAAGACGCTCATTTTTGAACAACGGTCAAAAAGCGATGAGTGAGGCCTTTATTTCTTTCAGATGAGAATTTTTCTTTTTTTTTCGTCGACGAAAAAAATTGTTGAAAAACTCCTTAACCAAGTTAAAAGTGTGAATTAAATCAACTGCTGGGAAAAAATTCGAAGGCGTTTTTTTTCTTATTTTTTTGAGATGATTCTTGAGGTCCATTTTCCTAGAAAGCCAAAAAAAGAAAAGAAATTCAATTCCAATTTTCTAGCAATTACCTATCAATCTTTCTCAACAATACAAATCCAATTAAGGAAGATTGAAGAATTCTAGAATTATTATATTTTCCCGGAACTATCATTCAAAGAAAGATGAATGTTTTTAGTGGATCGTTAAAAATATTCATTTTCCAAAAAAAAACACAAATTCGTACTTCCTAGGACTTCAAAAACTGTTCGTAAATGAGCCTTGCCATATTTTTCATCGTGTATCATTTTTCCATTTCTCACTGGTAGTATTTGTGCTCCACTTTTCCATTTTTTGTCTTTTCAAAAAACGTTTTTTTTTCTCAGTATCCCACTTTGCTCCTATGAACGGCTCACAAACGGTCTTGCTATTTTTTCCCTCTATTTTTTTCAGTTTTAGAAAACAACAAAACTTAAGAAGAAAATTTAACACAATTTTTTCCAGATATGTGGTTGGTTATTCTGTGCTTTGTCCTCCCCGCTATCATTTTCTCGATTTTTGCACTGATCGCGTGGCTTCGGGTT</canonical>
            <polymorphic>GTTAACCTTTTTTTACGTAGTAAATACCTAGGTTAATTTTAGTATGTGTCCCTCCCATTCTAAGATTAGCAGTGTCGCAAAAAAGAAGCATCGCACGTCATCATCATCATCTTTTTTTTACATGCATTGCTATAATCTGAAAGTCATTTAGGTCTACAAAATGTCCAACAAAACAATCTTGCTCAATTAATGGCTCTGTCCTTTTTATTCCAAATTACACTCGTTTTCGATTTGAGTGTTCTTATAAGACGCTCATTTTTGAACAACGGTCAAAAAGCGATGAGTGAGGCCTTTATTTCTTTCAGATGAGAATTTTTCTTTTTTTTTCGTCGACGAAAAAAATTGTTGAAAAACTCCTTAACCAAGTTAAAAGTGTGAATTAAATCAACTGCTGGGAAAAAATTCGAAGGCGTTTTTTTTCTTATTTTTTTGAGATGATTCTTGAGGTCCATTTTCCTAGAAAGCCAAAAAAAGAAAAGAAATTCAATTCCAATTTTCTMGCAATTACCTATCAATCTTTCTCAACAATACAAATCCAATTAAGGAAGATTGAAGAATTCTAGAATTATTATATTTTCCCGGAACTATCATTCAAAGAAAGATGAATGTTTTTAGTGGATCGTTAAAAATATTCATTTTCCAAAAAAAAACACAAATTCGTACTTCCTAGGACTTCAAAAACTGTTCGTAAATGAGCCTTGCCATATTTTTCATCGTGTATCATTTTTCCATTTCTCACTGGTAGTATTTGTGCTCCACTTTTCCATTTTTTGTCTTTTCAAAAAACGTTTTTTTTTCTCAGTATCCCACTTTGCTCCTATGAACGGCTCACAAACGGTCTTGCTATTTTTTCCCTCTATTTTTTTCAGTTTTAGAAAACAACAAAACTTAAGAAGAAAATTTAACACAATTTTTTCCAGATATGTGGTTGGTTATTCTGTGCTTTGTCCTCCCCGCTATCATTTTCTCGATTTTTGCACTGATCGCGTGGCTTCGGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>429 333 107 62 41 28</canonical_bands>
                <polymorphic_bands>429 333 107 103 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGTTGAAAAACTCCTTAACC</pcr_primer_p1>
		<pcr_primer_p2>GATAGTTCCGGGAAAATATAATAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTGTTGAAAAACTCCTTAACCAAGTTAAAAGTGTGAATTAAATCAACTGCTGGGAAAAAATTCGAAGGCGTTTTTTTTCTTATTTTTTTGAGATGATTCTTGAGGTCCATTTTCCTAGAAAGCCAAAAAAAGAAAAGAAATTCAATTCCAATTTTCTAGCAATTACCTATCAATCTTTCTCAACAATACAAATCCAATTAAGGAAGATTGAAGAATTCTAGAATTATTATATTTTCCCGGAACTATC</canonical_amplicon>
		<polymorphic_amplicon>AATTGTTGAAAAACTCCTTAACCAAGTTAAAAGTGTGAATTAAATCAACTGCTGGGAAAAAATTCGAAGGCGTTTTTTTTCTTATTTTTTTGAGATGATTCTTGAGGTCCATTTTCCTAGAAAGCCAAAAAAAGAAAAGAAATTCAATTCCAATTTTCTMGCAATTACCTATCAATCTTTCTCAACAATACAAATCCAATTAAGGAAGATTGAAGAATTCTAGAATTATTATATTTTCCCGGAACTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2546</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>684711</contig_pos>
        <strand></strand>
        <context>ATTCTTGAGG[T/C]CCATTTTCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAAATTCGAAGGCGTTTTTTTTCTTATTTTTTTGAGATGATTCTTGAGG</left_flank>
        <right_flank>CCATTTTCCTAGAAAGCCAAAAAAAGAAAAGAAATTCAATTCCAATTTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCGAATCCCAGAATCCTCGGCGACCTTTTCTTGAAATAGAAAATTTCACAGTTAACCTTTTTTTACGTAGTAAATACCTAGGTTAATTTTAGTATGTGTCCCTCCCATTCTAAGATTAGCAGTGTCGCAAAAAAGAAGCATCGCACGTCATCATCATCATCTTTTTTTTACATGCATTGCTATAATCTGAAAGTCATTTAGGTCTACAAAATGTCCAACAAAACAATCTTGCTCAATTAATGGCTCTGTCCTTTTTATTCCAAATTACACTCGTTTTCGATTTGAGTGTTCTTATAAGACGCTCATTTTTGAACAACGGTCAAAAAGCGATGAGTGAGGCCTTTATTTCTTTCAGATGAGAATTTTTCTTTTTTTTTCGTCGACGAAAAAAATTGTTGAAAAACTCCTTAACCAAGTTAAAAGTGTGAATTAAATCAACTGCTGGGAAAAAATTCGAAGGCGTTTTTTTTCTTATTTTTTTGAGATGATTCTTGAGGTCCATTTTCCTAGAAAGCCAAAAAAAGAAAAGAAATTCAATTCCAATTTTCTAGCAATTACCTATCAATCTTTCTCAACAATACAAATCCAATTAAGGAAGATTGAAGAATTCTAGAATTATTATATTTTCCCGGAACTATCATTCAAAGAAAGATGAATGTTTTTAGTGGATCGTTAAAAATATTCATTTTCCAAAAAAAAACACAAATTCGTACTTCCTAGGACTTCAAAAACTGTTCGTAAATGAGCCTTGCCATATTTTTCATCGTGTATCATTTTTCCATTTCTCACTGGTAGTATTTGTGCTCCACTTTTCCATTTTTTGTCTTTTCAAAAAACGTTTTTTTTTCTCAGTATCCCACTTTGCTCCTATGAACGGCTCACAAACGGTCTTGCTATTTTTTCCCTCTATTTTTTTCAGTTTTAGAAAACAACAAAACTTAAGAAGAAAATTTAACACAATTTTTTCCAGATATGTGGTTGGTTATTCTGTGCTTTGT</canonical>
            <polymorphic>CTTCGAATCCCAGAATCCTCGGCGACCTTTTCTTGAAATAGAAAATTTCACAGTTAACCTTTTTTTACGTAGTAAATACCTAGGTTAATTTTAGTATGTGTCCCTCCCATTCTAAGATTAGCAGTGTCGCAAAAAAGAAGCATCGCACGTCATCATCATCATCTTTTTTTTACATGCATTGCTATAATCTGAAAGTCATTTAGGTCTACAAAATGTCCAACAAAACAATCTTGCTCAATTAATGGCTCTGTCCTTTTTATTCCAAATTACACTCGTTTTCGATTTGAGTGTTCTTATAAGACGCTCATTTTTGAACAACGGTCAAAAAGCGATGAGTGAGGCCTTTATTTCTTTCAGATGAGAATTTTTCTTTTTTTTTCGTCGACGAAAAAAATTGTTGAAAAACTCCTTAACCAAGTTAAAAGTGTGAATTAAATCAACTGCTGGGAAAAAATTCGAAGGCGTTTTTTTTCTTATTTTTTTGAGATGATTCTTGAGGYCCATTTTCCTAGAAAGCCAAAAAAAGAAAAGAAATTCAATTCCAATTTTCTAGCAATTACCTATCAATCTTTCTCAACAATACAAATCCAATTAAGGAAGATTGAAGAATTCTAGAATTATTATATTTTCCCGGAACTATCATTCAAAGAAAGATGAATGTTTTTAGTGGATCGTTAAAAATATTCATTTTCCAAAAAAAAACACAAATTCGTACTTCCTAGGACTTCAAAAACTGTTCGTAAATGAGCCTTGCCATATTTTTCATCGTGTATCATTTTTCCATTTCTCACTGGTAGTATTTGTGCTCCACTTTTCCATTTTTTGTCTTTTCAAAAAACGTTTTTTTTTCTCAGTATCCCACTTTGCTCCTATGAACGGCTCACAAACGGTCTTGCTATTTTTTCCCTCTATTTTTTTCAGTTTTAGAAAACAACAAAACTTAAGAAGAAAATTTAACACAATTTTTTCCAGATATGTGGTTGGTTATTCTGTGCTTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTTATTTCTTTCAGATGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>ATTGGATTTGTATTGTTGAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCTTTATTTCTTTCAGATGAGAATTTTTCTTTTTTTTTCGTCGACGAAAAAAATTGTTGAAAAACTCCTTAACCAAGTTAAAAGTGTGAATTAAATCAACTGCTGGGAAAAAATTCGAAGGCGTTTTTTTTCTTATTTTTTTGAGATGATTCTTGAGGTCCATTTTCCTAGAAAGCCAAAAAAAGAAAAGAAATTCAATTCCAATTTTCTAGCAATTACCTATCAATCTTTCTCAACAATACAAATCCAAT</canonical_amplicon>
		<polymorphic_amplicon>CCTTTATTTCTTTCAGATGAGAATTTTTCTTTTTTTTTCGTCGACGAAAAAAATTGTTGAAAAACTCCTTAACCAAGTTAAAAGTGTGAATTAAATCAACTGCTGGGAAAAAATTCGAAGGCGTTTTTTTTCTTATTTTTTTGAGATGATTCTTGAGGYCCATTTTCCTAGAAAGCCAAAAAAAGAAAAGAAATTCAATTCCAATTTTCTAGCAATTACCTATCAATCTTTCTCAACAATACAAATCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2547</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>684696</contig_pos>
        <strand></strand>
        <context>TATTTTTTTG[A/G]GATGATTCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCAACTGCTGGGAAAAAATTCGAAGGCGTTTTTTTTCTTATTTTTTTG</left_flank>
        <right_flank>GATGATTCTTGAGGTCCATTTTCCTAGAAAGCCAAAAAAAGAAAAGAAAT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAATTCTGAGAACTTCGAATCCCAGAATCCTCGGCGACCTTTTCTTGAAATAGAAAATTTCACAGTTAACCTTTTTTTACGTAGTAAATACCTAGGTTAATTTTAGTATGTGTCCCTCCCATTCTAAGATTAGCAGTGTCGCAAAAAAGAAGCATCGCACGTCATCATCATCATCTTTTTTTTACATGCATTGCTATAATCTGAAAGTCATTTAGGTCTACAAAATGTCCAACAAAACAATCTTGCTCAATTAATGGCTCTGTCCTTTTTATTCCAAATTACACTCGTTTTCGATTTGAGTGTTCTTATAAGACGCTCATTTTTGAACAACGGTCAAAAAGCGATGAGTGAGGCCTTTATTTCTTTCAGATGAGAATTTTTCTTTTTTTTTCGTCGACGAAAAAAATTGTTGAAAAACTCCTTAACCAAGTTAAAAGTGTGAATTAAATCAACTGCTGGGAAAAAATTCGAAGGCGTTTTTTTTCTTATTTTTTTGAGATGATTCTTGAGGTCCATTTTCCTAGAAAGCCAAAAAAAGAAAAGAAATTCAATTCCAATTTTCTAGCAATTACCTATCAATCTTTCTCAACAATACAAATCCAATTAAGGAAGATTGAAGAATTCTAGAATTATTATATTTTCCCGGAACTATCATTCAAAGAAAGATGAATGTTTTTAGTGGATCGTTAAAAATATTCATTTTCCAAAAAAAAACACAAATTCGTACTTCCTAGGACTTCAAAAACTGTTCGTAAATGAGCCTTGCCATATTTTTCATCGTGTATCATTTTTCCATTTCTCACTGGTAGTATTTGTGCTCCACTTTTCCATTTTTTGTCTTTTCAAAAAACGTTTTTTTTTCTCAGTATCCCACTTTGCTCCTATGAACGGCTCACAAACGGTCTTGCTATTTTTTCCCTCTATTTTTTTCAGTTTTAGAAAACAACAAAACTTAAGAAGAAAATTTAACACAATTTTTTCCAGATATGTGGTTGGT</canonical>
            <polymorphic>TTTGAATTCTGAGAACTTCGAATCCCAGAATCCTCGGCGACCTTTTCTTGAAATAGAAAATTTCACAGTTAACCTTTTTTTACGTAGTAAATACCTAGGTTAATTTTAGTATGTGTCCCTCCCATTCTAAGATTAGCAGTGTCGCAAAAAAGAAGCATCGCACGTCATCATCATCATCTTTTTTTTACATGCATTGCTATAATCTGAAAGTCATTTAGGTCTACAAAATGTCCAACAAAACAATCTTGCTCAATTAATGGCTCTGTCCTTTTTATTCCAAATTACACTCGTTTTCGATTTGAGTGTTCTTATAAGACGCTCATTTTTGAACAACGGTCAAAAAGCGATGAGTGAGGCCTTTATTTCTTTCAGATGAGAATTTTTCTTTTTTTTTCGTCGACGAAAAAAATTGTTGAAAAACTCCTTAACCAAGTTAAAAGTGTGAATTAAATCAACTGCTGGGAAAAAATTCGAAGGCGTTTTTTTTCTTATTTTTTTGRGATGATTCTTGAGGTCCATTTTCCTAGAAAGCCAAAAAAAGAAAAGAAATTCAATTCCAATTTTCTAGCAATTACCTATCAATCTTTCTCAACAATACAAATCCAATTAAGGAAGATTGAAGAATTCTAGAATTATTATATTTTCCCGGAACTATCATTCAAAGAAAGATGAATGTTTTTAGTGGATCGTTAAAAATATTCATTTTCCAAAAAAAAACACAAATTCGTACTTCCTAGGACTTCAAAAACTGTTCGTAAATGAGCCTTGCCATATTTTTCATCGTGTATCATTTTTCCATTTCTCACTGGTAGTATTTGTGCTCCACTTTTCCATTTTTTGTCTTTTCAAAAAACGTTTTTTTTTCTCAGTATCCCACTTTGCTCCTATGAACGGCTCACAAACGGTCTTGCTATTTTTTCCCTCTATTTTTTTCAGTTTTAGAAAACAACAAAACTTAAGAAGAAAATTTAACACAATTTTTTCCAGATATGTGGTTGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATAAGACGCTCATTTTTGAAC</pcr_primer_p1>
		<pcr_primer_p2>GGAATTGAATTTCTTTTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTATAAGACGCTCATTTTTGAACAACGGTCAAAAAGCGATGAGTGAGGCCTTTATTTCTTTCAGATGAGAATTTTTCTTTTTTTTTCGTCGACGAAAAAAATTGTTGAAAAACTCCTTAACCAAGTTAAAAGTGTGAATTAAATCAACTGCTGGGAAAAAATTCGAAGGCGTTTTTTTTCTTATTTTTTTGAGATGATTCTTGAGGTCCATTTTCCTAGAAAGCCAAAAAAAGAAAAGAAATTCAATTCC</canonical_amplicon>
		<polymorphic_amplicon>TTATAAGACGCTCATTTTTGAACAACGGTCAAAAAGCGATGAGTGAGGCCTTTATTTCTTTCAGATGAGAATTTTTCTTTTTTTTTCGTCGACGAAAAAAATTGTTGAAAAACTCCTTAACCAAGTTAAAAGTGTGAATTAAATCAACTGCTGGGAAAAAATTCGAAGGCGTTTTTTTTCTTATTTTTTTGRGATGATTCTTGAGGTCCATTTTCCTAGAAAGCCAAAAAAAGAAAAGAAATTCAATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2548</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>684444</contig_pos>
        <strand></strand>
        <context>AAACAATCTT[G/A]CTCAATTAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TATAATCTGAAAGTCATTTAGGTCTACAAAATGTCCAACAAAACAATCTT</left_flank>
        <right_flank>CTCAATTAATGGCTCTGTCCTTTTTATTCCAAATTACACTCGTTTTCGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCACCGACAGCATGCATTTCTAGGCCTTTTGCGTCGCTATGTCTTGGTTCCGTTTTCTTTACGCACACGTTTGTGCTTCCATTTTTTGTTGAATATTTCACTTGGTTCTGTTCTCAAAAAACTAACCGAGCCGTGGATAATGGGACACTTTTTTGTTTTGGTTTGACATGGAAATAGTCAATGGTGTTTGTGTAGATCAAATGAACAAAGTAACGGTTGAATATTCAACTATTCAAGGAAACCATAATTGTTTTGAATTCTGAGAACTTCGAATCCCAGAATCCTCGGCGACCTTTTCTTGAAATAGAAAATTTCACAGTTAACCTTTTTTTACGTAGTAAATACCTAGGTTAATTTTAGTATGTGTCCCTCCCATTCTAAGATTAGCAGTGTCGCAAAAAAGAAGCATCGCACGTCATCATCATCATCTTTTTTTTACATGCATTGCTATAATCTGAAAGTCATTTAGGTCTACAAAATGTCCAACAAAACAATCTTGCTCAATTAATGGCTCTGTCCTTTTTATTCCAAATTACACTCGTTTTCGATTTGAGTGTTCTTATAAGACGCTCATTTTTGAACAACGGTCAAAAAGCGATGAGTGAGGCCTTTATTTCTTTCAGATGAGAATTTTTCTTTTTTTTTCGTCGACGAAAAAAATTGTTGAAAAACTCCTTAACCAAGTTAAAAGTGTGAATTAAATCAACTGCTGGGAAAAAATTCGAAGGCGTTTTTTTTCTTATTTTTTTGAGATGATTCTTGAGGTCCATTTTCCTAGAAAGCCAAAAAAAGAAAAGAAATTCAATTCCAATTTTCTAGCAATTACCTATCAATCTTTCTCAACAATACAAATCCAATTAAGGAAGATTGAAGAATTCTAGAATTATTATATTTTCCCGGAACTATCATTCAAAGAAAGATGAATGTTTTTAGTGGATCGTTAAAAATATTCATTTTCCAAAAAAAAACACAAATTCGTACTTCCTAGGACTTCAAAAA</canonical>
            <polymorphic>TCCACCGACAGCATGCATTTCTAGGCCTTTTGCGTCGCTATGTCTTGGTTCCGTTTTCTTTACGCACACGTTTGTGCTTCCATTTTTTGTTGAATATTTCACTTGGTTCTGTTCTCAAAAAACTAACCGAGCCGTGGATAATGGGACACTTTTTTGTTTTGGTTTGACATGGAAATAGTCAATGGTGTTTGTGTAGATCAAATGAACAAAGTAACGGTTGAATATTCAACTATTCAAGGAAACCATAATTGTTTTGAATTCTGAGAACTTCGAATCCCAGAATCCTCGGCGACCTTTTCTTGAAATAGAAAATTTCACAGTTAACCTTTTTTTACGTAGTAAATACCTAGGTTAATTTTAGTATGTGTCCCTCCCATTCTAAGATTAGCAGTGTCGCAAAAAAGAAGCATCGCACGTCATCATCATCATCTTTTTTTTACATGCATTGCTATAATCTGAAAGTCATTTAGGTCTACAAAATGTCCAACAAAACAATCTTRCTCAATTAATGGCTCTGTCCTTTTTATTCCAAATTACACTCGTTTTCGATTTGAGTGTTCTTATAAGACGCTCATTTTTGAACAACGGTCAAAAAGCGATGAGTGAGGCCTTTATTTCTTTCAGATGAGAATTTTTCTTTTTTTTTCGTCGACGAAAAAAATTGTTGAAAAACTCCTTAACCAAGTTAAAAGTGTGAATTAAATCAACTGCTGGGAAAAAATTCGAAGGCGTTTTTTTTCTTATTTTTTTGAGATGATTCTTGAGGTCCATTTTCCTAGAAAGCCAAAAAAAGAAAAGAAATTCAATTCCAATTTTCTAGCAATTACCTATCAATCTTTCTCAACAATACAAATCCAATTAAGGAAGATTGAAGAATTCTAGAATTATTATATTTTCCCGGAACTATCATTCAAAGAAAGATGAATGTTTTTAGTGGATCGTTAAAAATATTCATTTTCCAAAAAAAAACACAAATTCGTACTTCCTAGGACTTCAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACATGCATTGCTATAATCTGA</pcr_primer_p1>
		<pcr_primer_p2>ACTTGGTTAAGGAGTTTTTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTACATGCATTGCTATAATCTGAAAGTCATTTAGGTCTACAAAATGTCCAACAAAACAATCTTGCTCAATTAATGGCTCTGTCCTTTTTATTCCAAATTACACTCGTTTTCGATTTGAGTGTTCTTATAAGACGCTCATTTTTGAACAACGGTCAAAAAGCGATGAGTGAGGCCTTTATTTCTTTCAGATGAGAATTTTTCTTTTTTTTTCGTCGACGAAAAAAATTGTTGAAAAACTCCTTAACCAAGT</canonical_amplicon>
		<polymorphic_amplicon>TTACATGCATTGCTATAATCTGAAAGTCATTTAGGTCTACAAAATGTCCAACAAAACAATCTTRCTCAATTAATGGCTCTGTCCTTTTTATTCCAAATTACACTCGTTTTCGATTTGAGTGTTCTTATAAGACGCTCATTTTTGAACAACGGTCAAAAAGCGATGAGTGAGGCCTTTATTTCTTTCAGATGAGAATTTTTCTTTTTTTTTCGTCGACGAAAAAAATTGTTGAAAAACTCCTTAACCAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2549</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>745535</contig_pos>
        <strand>+</strand>
        <context>ATCTCAGAAG[C/T]TATGAACTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTCTCGTCCACAGATGGTCATCATAATATGGAGCTTTAAATCTCAGAAG</left_flank>
        <right_flank>TATGAACTTCACAAATCTTATTCTTTCTAAATGGAATTCCACTAAAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAGTAGAGTTGTTAATTTTTTTGGCTTTATGAGTAATCAACAGATTCGTATTTTGGATTCAGATCGTTTAGTCTTTTGTGGGAAATTGGAAATGTTTGACTAACTGACTCAGAACATGCTTGGGGGACCACAACTTATGTATCCGAAAAACGCTGTAGGAATGTTATACTGGTACAAAAAATCAGAGCTGTGAAGGAAAAACGGCGAATGCCGAAGGTCCCACAGCAACAACTACCGTTACTGGAAGATATTTTCGTTTTCAGGATTCGTTTTCTCATTTTCACTGCTTTTTGTTAATTTTTCCGTTATTTTCCATCAGTAACGTCGTAAAAAAAATGTTGGACTGTTAAAGAATTGACTGAAAACGCAAAAAATATCGAGAAGAAACCTAAAAATGAAAATGTTTTTAGTGTACGGTAGCGGTCGTTGTGGAACCTTCGGCCACGGGTTCTCGTCCACAGATGGTCATCATAATATGGAGCTTTAAATCTCAGAAGTTATGAACTTCACAAATCTTATTCTTTCTAAATGGAATTCCACTAAAAAAAATCATTCAAACCAAATATTTTCTTACCATCTATAAACGAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTCTGCTGTAAAACCTGCAATAGAAAGGTGTTCACACTGTCAAATTTGTCCCAATTATCTCAATTCCTATGCAAGATGTAAAAAATGTGCCAACTGACCAAACAATTCTGATATTGTGCTAAACGATTTTTATTTAAAGGTACTCATGTTACTCTGAAATTTTGAAGCTTTGAGTTCAAAATATACAGAGATGATTCACAAAAAAAATATTATTCGAAATTCTGAATTTGCAGACTGAATGAAACTTTGGAAGTGGACTACTCGGGTGTCTGCTGCGAAGACATGTGTTCGGCCGGTCAAACAACTCTAACAGTTTGCGATTCGGAGGGCAAAACGCATACTGATATATGTTCTTTCTACGTTGTAAGTG</canonical>
            <polymorphic>TTGAGTAGAGTTGTTAATTTTTTTGGCTTTATGAGTAATCAACAGATTCGTATTTTGGATTCAGATCGTTTAGTCTTTTGTGGGAAATTGGAAATGTTTGACTAACTGACTCAGAACATGCTTGGGGGACCACAACTTATGTATCCGAAAAACGCTGTAGGAATGTTATACTGGTACAAAAAATCAGAGCTGTGAAGGAAAAACGGCGAATGCCGAAGGTCCCACAGCAACAACTACCGTTACTGGAAGATATTTTCGTTTTCAGGATTCGTTTTCTCATTTTCACTGCTTTTTGTTAATTTTTCCGTTATTTTCCATCAGTAACGTCGTAAAAAAAATGTTGGACTGTTAAAGAATTGACTGAAAACGCAAAAAATATCGAGAAGAAACCTAAAAATGAAAATGTTTTTAGTGTACGGTAGCGGTCGTTGTGGAACCTTCGGCCACGGGTTCTCGTCCACAGATGGTCATCATAATATGGAGCTTTAAATCTCAGAAGYTATGAACTTCACAAATCTTATTCTTTCTAAATGGAATTCCACTAAAAAAAATCATTCAAACCAAATATTTTCTTACCATCTATAAACGAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTCTGCTGTAAAACCTGCAATAGAAAGGTGTTCACACTGTCAAATTTGTCCCAATTATCTCAATTCCTATGCAAGATGTAAAAAATGTGCCAACTGACCAAACAATTCTGATATTGTGCTAAACGATTTTTATTTAAAGGTACTCATGTTACTCTGAAATTTTGAAGCTTTGAGTTCAAAATATACAGAGATGATTCACAAAAAAAATATTATTCGAAATTCTGAATTTGCAGACTGAATGAAACTTTGGAAGTGGACTACTCGGGTGTCTGCTGCGAAGACATGTGTTCGGCCGGTCAAACAACTCTAACAGTTTGCGATTCGGAGGGCAAAACGCATACTGATATATGTTCTTTCTACGTTGTAAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATCCGAAAAACGCTGTAG</pcr_primer_p1>
		<pcr_primer_p2>AAGAAAATATTTGGTTTGAATGA</pcr_primer_p2>
		<pcr_amplicon_size>434</pcr_amplicon_size>
		<canonical_amplicon>GTATCCGAAAAACGCTGTAGGAATGTTATACTGGTACAAAAAATCAGAGCTGTGAAGGAAAAACGGCGAATGCCGAAGGTCCCACAGCAACAACTACCGTTACTGGAAGATATTTTCGTTTTCAGGATTCGTTTTCTCATTTTCACTGCTTTTTGTTAATTTTTCCGTTATTTTCCATCAGTAACGTCGTAAAAAAAATGTTGGACTGTTAAAGAATTGACTGAAAACGCAAAAAATATCGAGAAGAAACCTAAAAATGAAAATGTTTTTAGTGTACGGTAGCGGTCGTTGTGGAACCTTCGGCCACGGGTTCTCGTCCACAGATGGTCATCATAATATGGAGCTTTAAATCTCAGAAGTTATGAACTTCACAAATCTTATTCTTTCTAAATGGAATTCCACTAAAAAAAATCATTCAAACCAAATATTTTCTT</canonical_amplicon>
		<polymorphic_amplicon>GTATCCGAAAAACGCTGTAGGAATGTTATACTGGTACAAAAAATCAGAGCTGTGAAGGAAAAACGGCGAATGCCGAAGGTCCCACAGCAACAACTACCGTTACTGGAAGATATTTTCGTTTTCAGGATTCGTTTTCTCATTTTCACTGCTTTTTGTTAATTTTTCCGTTATTTTCCATCAGTAACGTCGTAAAAAAAATGTTGGACTGTTAAAGAATTGACTGAAAACGCAAAAAATATCGAGAAGAAACCTAAAAATGAAAATGTTTTTAGTGTACGGTAGCGGTCGTTGTGGAACCTTCGGCCACGGGTTCTCGTCCACAGATGGTCATCATAATATGGAGCTTTAAATCTCAGAAGYTATGAACTTCACAAATCTTATTCTTTCTAAATGGAATTCCACTAAAAAAAATCATTCAAACCAAATATTTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2550</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>745586</contig_pos>
        <strand>+</strand>
        <context>ACTWAAAAAA[A/C]TCATTCAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATGAACTTCACAAATCTTATTCTTTCTAAATGGAATTCCACTAAAAAAA</left_flank>
        <right_flank>TCATTCAAACCAAATATTTTCTTACCATCTATAAACGAATTTGCAAAATT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTGGATTCAGATCGTTTAGTCTTTTGTGGGAAATTGGAAATGTTTGACTAACTGACTCAGAACATGCTTGGGGGACCACAACTTATGTATCCGAAAAACGCTGTAGGAATGTTATACTGGTACAAAAAATCAGAGCTGTGAAGGAAAAACGGCGAATGCCGAAGGTCCCACAGCAACAACTACCGTTACTGGAAGATATTTTCGTTTTCAGGATTCGTTTTCTCATTTTCACTGCTTTTTGTTAATTTTTCCGTTATTTTCCATCAGTAACGTCGTAAAAAAAATGTTGGACTGTTAAAGAATTGACTGAAAACGCAAAAAATATCGAGAAGAAACCTAAAAATGAAAATGTTTTTAGTGTACGGTAGCGGTCGTTGTGGAACCTTCGGCCACGGGTTCTCGTCCACAGATGGTCATCATAATATGGAGCTTTAAATCTCAGAAGTTATGAACTTCACAAATCTTATTCTTTCTAAATGGAATTCCACTAAAAAAAATCATTCAAACCAAATATTTTCTTACCATCTATAAACGAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTCTGCTGTAAAACCTGCAATAGAAAGGTGTTCACACTGTCAAATTTGTCCCAATTATCTCAATTCCTATGCAAGATGTAAAAAATGTGCCAACTGACCAAACAATTCTGATATTGTGCTAAACGATTTTTATTTAAAGGTACTCATGTTACTCTGAAATTTTGAAGCTTTGAGTTCAAAATATACAGAGATGATTCACAAAAAAAATATTATTCGAAATTCTGAATTTGCAGACTGAATGAAACTTTGGAAGTGGACTACTCGGGTGTCTGCTGCGAAGACATGTGTTCGGCCGGTCAAACAACTCTAACAGTTTGCGATTCGGAGGGCAAAACGCATACTGATATATGTTCTTTCTACGTTGTAAGTGTCCTTTTTTCTGTTTCCGATATATTCCTGCTGTCGTCACAAAGATCACTTT</canonical>
            <polymorphic>ATTTTGGATTCAGATCGTTTAGTCTTTTGTGGGAAATTGGAAATGTTTGACTAACTGACTCAGAACATGCTTGGGGGACCACAACTTATGTATCCGAAAAACGCTGTAGGAATGTTATACTGGTACAAAAAATCAGAGCTGTGAAGGAAAAACGGCGAATGCCGAAGGTCCCACAGCAACAACTACCGTTACTGGAAGATATTTTCGTTTTCAGGATTCGTTTTCTCATTTTCACTGCTTTTTGTTAATTTTTCCGTTATTTTCCATCAGTAACGTCGTAAAAAAAATGTTGGACTGTTAAAGAATTGACTGAAAACGCAAAAAATATCGAGAAGAAACCTAAAAATGAAAATGTTTTTAGTGTACGGTAGCGGTCGTTGTGGAACCTTCGGCCACGGGTTCTCGTCCACAGATGGTCATCATAATATGGAGCTTTAAATCTCAGAAGTTATGAACTTCACAAATCTTATTCTTTCTAAATGGAATTCCACTAAAAAAAMTCATTCAAACCAAATATTTTCTTACCATCTATAAACGAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTCTGCTGTAAAACCTGCAATAGAAAGGTGTTCACACTGTCAAATTTGTCCCAATTATCTCAATTCCTATGCAAGATGTAAAAAATGTGCCAACTGACCAAACAATTCTGATATTGTGCTAAACGATTTTTATTTAAAGGTACTCATGTTACTCTGAAATTTTGAAGCTTTGAGTTCAAAATATACAGAGATGATTCACAAAAAAAATATTATTCGAAATTCTGAATTTGCAGACTGAATGAAACTTTGGAAGTGGACTACTCGGGTGTCTGCTGCGAAGACATGTGTTCGGCCGGTCAAACAACTCTAACAGTTTGCGATTCGGAGGGCAAAACGCATACTGATATATGTTCTTTCTACGTTGTAAGTGTCCTTTTTTCTGTTTCCGATATATTCCTGCTGTCGTCACAAAGATCACTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCATCATAATATGGAGCTTTA</pcr_primer_p1>
		<pcr_primer_p2>CAGACAACCCATATCTTACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>170</pcr_amplicon_size>
		<canonical_amplicon>GGTCATCATAATATGGAGCTTTAAATCTCAGAAGTTATGAACTTCACAAATCTTATTCTTTCTAAATGGAATTCCACTAAAAAAAATCATTCAAACCAAATATTTTCTTACCATCTATAAACGAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTCTG</canonical_amplicon>
		<polymorphic_amplicon>GGTCATCATAATATGGAGCTTTAAATCTCAGAAGTTATGAACTTCACAAATCTTATTCTTTCTAAATGGAATTCCACTAAAAAAAMTCATTCAAACCAAATATTTTCTTACCATCTATAAACGAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2551</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>745618</contig_pos>
        <strand></strand>
        <context>TTACCATCTA[T/A]AAACGAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GGAATTCCACTAAAAAAAATCATTCAAACCAAATATTTTCTTACCATCTA</left_flank>
        <right_flank>AAACGAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATTGGAAATGTTTGACTAACTGACTCAGAACATGCTTGGGGGACCACAACTTATGTATCCGAAAAACGCTGTAGGAATGTTATACTGGTACAAAAAATCAGAGCTGTGAAGGAAAAACGGCGAATGCCGAAGGTCCCACAGCAACAACTACCGTTACTGGAAGATATTTTCGTTTTCAGGATTCGTTTTCTCATTTTCACTGCTTTTTGTTAATTTTTCCGTTATTTTCCATCAGTAACGTCGTAAAAAAAATGTTGGACTGTTAAAGAATTGACTGAAAACGCAAAAAATATCGAGAAGAAACCTAAAAATGAAAATGTTTTTAGTGTACGGTAGCGGTCGTTGTGGAACCTTCGGCCACGGGTTCTCGTCCACAGATGGTCATCATAATATGGAGCTTTAAATCTCAGAAGTTATGAACTTCACAAATCTTATTCTTTCTAAATGGAATTCCACTAAAAAAAATCATTCAAACCAAATATTTTCTTACCATCTATAAACGAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTCTGCTGTAAAACCTGCAATAGAAAGGTGTTCACACTGTCAAATTTGTCCCAATTATCTCAATTCCTATGCAAGATGTAAAAAATGTGCCAACTGACCAAACAATTCTGATATTGTGCTAAACGATTTTTATTTAAAGGTACTCATGTTACTCTGAAATTTTGAAGCTTTGAGTTCAAAATATACAGAGATGATTCACAAAAAAAATATTATTCGAAATTCTGAATTTGCAGACTGAATGAAACTTTGGAAGTGGACTACTCGGGTGTCTGCTGCGAAGACATGTGTTCGGCCGGTCAAACAACTCTAACAGTTTGCGATTCGGAGGGCAAAACGCATACTGATATATGTTCTTTCTACGTTGTAAGTGTCCTTTTTTCTGTTTCCGATATATTCCTGCTGTCGTCACAAAGATCACTTTATTAGGTTCAAAAAATCATCACACATTTTTTA</canonical>
            <polymorphic>GAAATTGGAAATGTTTGACTAACTGACTCAGAACATGCTTGGGGGACCACAACTTATGTATCCGAAAAACGCTGTAGGAATGTTATACTGGTACAAAAAATCAGAGCTGTGAAGGAAAAACGGCGAATGCCGAAGGTCCCACAGCAACAACTACCGTTACTGGAAGATATTTTCGTTTTCAGGATTCGTTTTCTCATTTTCACTGCTTTTTGTTAATTTTTCCGTTATTTTCCATCAGTAACGTCGTAAAAAAAATGTTGGACTGTTAAAGAATTGACTGAAAACGCAAAAAATATCGAGAAGAAACCTAAAAATGAAAATGTTTTTAGTGTACGGTAGCGGTCGTTGTGGAACCTTCGGCCACGGGTTCTCGTCCACAGATGGTCATCATAATATGGAGCTTTAAATCTCAGAAGTTATGAACTTCACAAATCTTATTCTTTCTAAATGGAATTCCACTAAAAAAAATCATTCAAACCAAATATTTTCTTACCATCTAWAAACGAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTCTGCTGTAAAACCTGCAATAGAAAGGTGTTCACACTGTCAAATTTGTCCCAATTATCTCAATTCCTATGCAAGATGTAAAAAATGTGCCAACTGACCAAACAATTCTGATATTGTGCTAAACGATTTTTATTTAAAGGTACTCATGTTACTCTGAAATTTTGAAGCTTTGAGTTCAAAATATACAGAGATGATTCACAAAAAAAATATTATTCGAAATTCTGAATTTGCAGACTGAATGAAACTTTGGAAGTGGACTACTCGGGTGTCTGCTGCGAAGACATGTGTTCGGCCGGTCAAACAACTCTAACAGTTTGCGATTCGGAGGGCAAAACGCATACTGATATATGTTCTTTCTACGTTGTAAGTGTCCTTTTTTCTGTTTCCGATATATTCCTGCTGTCGTCACAAAGATCACTTTATTAGGTTCAAAAAATCATCACACATTTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCACAAATCTTATTCTTTCTAAATG</pcr_primer_p1>
		<pcr_primer_p2>AATTTCAGAGTAACATGAGTACCTT</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>TTCACAAATCTTATTCTTTCTAAATGGAATTCCACTAAAAAAAATCATTCAAACCAAATATTTTCTTACCATCTATAAACGAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTCTGCTGTAAAACCTGCAATAGAAAGGTGTTCACACTGTCAAATTTGTCCCAATTATCTCAATTCCTATGCAAGATGTAAAAAATGTGCCAACTGACCAAACAATTCTGATATTGTGCTAAACGATTTTTATTTAAAGGTACTCATGTTACTCTGAAATT</canonical_amplicon>
		<polymorphic_amplicon>TTCACAAATCTTATTCTTTCTAAATGGAATTCCACTAAAAAAAATCATTCAAACCAAATATTTTCTTACCATCTAWAAACGAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTCTGCTGTAAAACCTGCAATAGAAAGGTGTTCACACTGTCAAATTTGTCCCAATTATCTCAATTCCTATGCAAGATGTAAAAAATGTGCCAACTGACCAAACAATTCTGATATTGTGCTAAACGATTTTTATTTAAAGGTACTCATGTTACTCTGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2552</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>745726</contig_pos>
        <strand></strand>
        <context>ccaattatct[C/T]aattcctatg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACCTGCAATAGAAAGGTGTTCACACTGTCAAATTTGTCCCAATTATCT</left_flank>
        <right_flank>AATTCCTATGCAAGATGTAAAAAATGTGCCAACTGACCAAACAATTCTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGAAGGAAAAACGGCGAATGCCGAAGGTCCCACAGCAACAACTACCGTTACTGGAAGATATTTTCGTTTTCAGGATTCGTTTTCTCATTTTCACTGCTTTTTGTTAATTTTTCCGTTATTTTCCATCAGTAACGTCGTAAAAAAAATGTTGGACTGTTAAAGAATTGACTGAAAACGCAAAAAATATCGAGAAGAAACCTAAAAATGAAAATGTTTTTAGTGTACGGTAGCGGTCGTTGTGGAACCTTCGGCCACGGGTTCTCGTCCACAGATGGTCATCATAATATGGAGCTTTAAATCTCAGAAGTTATGAACTTCACAAATCTTATTCTTTCTAAATGGAATTCCACTAAAAAAAATCATTCAAACCAAATATTTTCTTACCATCTATAAACGAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTCTGCTGTAAAACCTGCAATAGAAAGGTGTTCACACTGTCAAATTTGTCCCAATTATCTCAATTCCTATGCAAGATGTAAAAAATGTGCCAACTGACCAAACAATTCTGATATTGTGCTAAACGATTTTTATTTAAAGGTACTCATGTTACTCTGAAATTTTGAAGCTTTGAGTTCAAAATATACAGAGATGATTCACAAAAAAAATATTATTCGAAATTCTGAATTTGCAGACTGAATGAAACTTTGGAAGTGGACTACTCGGGTGTCTGCTGCGAAGACATGTGTTCGGCCGGTCAAACAACTCTAACAGTTTGCGATTCGGAGGGCAAAACGCATACTGATATATGTTCTTTCTACGTTGTAAGTGTCCTTTTTTCTGTTTCCGATATATTCCTGCTGTCGTCACAAAGATCACTTTATTAGGTTCAAAAAATCATCACACATTTTTTATAGTCTGTAGCCTTTACCCTTCATGGCAACGATGATGACAATCTCAAATTCGGTTGGGCTTTTTTTGTATCCTGCCAACATGATCAGAAAATCCTATAGCAGATCATA</canonical>
            <polymorphic>GTGAAGGAAAAACGGCGAATGCCGAAGGTCCCACAGCAACAACTACCGTTACTGGAAGATATTTTCGTTTTCAGGATTCGTTTTCTCATTTTCACTGCTTTTTGTTAATTTTTCCGTTATTTTCCATCAGTAACGTCGTAAAAAAAATGTTGGACTGTTAAAGAATTGACTGAAAACGCAAAAAATATCGAGAAGAAACCTAAAAATGAAAATGTTTTTAGTGTACGGTAGCGGTCGTTGTGGAACCTTCGGCCACGGGTTCTCGTCCACAGATGGTCATCATAATATGGAGCTTTAAATCTCAGAAGTTATGAACTTCACAAATCTTATTCTTTCTAAATGGAATTCCACTAAAAAAAATCATTCAAACCAAATATTTTCTTACCATCTATAAACGAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTCTGCTGTAAAACCTGCAATAGAAAGGTGTTCACACTGTCAAATTTGTCCCAATTATCTYAATTCCTATGCAAGATGTAAAAAATGTGCCAACTGACCAAACAATTCTGATATTGTGCTAAACGATTTTTATTTAAAGGTACTCATGTTACTCTGAAATTTTGAAGCTTTGAGTTCAAAATATACAGAGATGATTCACAAAAAAAATATTATTCGAAATTCTGAATTTGCAGACTGAATGAAACTTTGGAAGTGGACTACTCGGGTGTCTGCTGCGAAGACATGTGTTCGGCCGGTCAAACAACTCTAACAGTTTGCGATTCGGAGGGCAAAACGCATACTGATATATGTTCTTTCTACGTTGTAAGTGTCCTTTTTTCTGTTTCCGATATATTCCTGCTGTCGTCACAAAGATCACTTTATTAGGTTCAAAAAATCATCACACATTTTTTATAGTCTGTAGCCTTTACCCTTCATGGCAACGATGATGACAATCTCAAATTCGGTTGGGCTTTTTTTGTATCCTGCCAACATGATCAGAAAATCCTATAGCAGATCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAACCAAATATTTTCTTACCA</pcr_primer_p1>
		<pcr_primer_p2>CAAAGCTTCAAAATTTCAGAGTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCAAACCAAATATTTTCTTACCATCTATAAACGAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTCTGCTGTAAAACCTGCAATAGAAAGGTGTTCACACTGTCAAATTTGTCCCAATTATCTCAATTCCTATGCAAGATGTAAAAAATGTGCCAACTGACCAAACAATTCTGATATTGTGCTAAACGATTTTTATTTAAAGGTACTCATGTTACTCTGAAATTTTGAAGCTTTG</canonical_amplicon>
		<polymorphic_amplicon>TCAAACCAAATATTTTCTTACCATCTATAAACGAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTCTGCTGTAAAACCTGCAATAGAAAGGTGTTCACACTGTCAAATTTGTCCCAATTATCTYAATTCCTATGCAAGATGTAAAAAATGTGCCAACTGACCAAACAATTCTGATATTGTGCTAAACGATTTTTATTTAAAGGTACTCATGTTACTCTGAAATTTTGAAGCTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2553</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>745770</contig_pos>
        <strand></strand>
        <context>tgaccaaaca[A/C]ttctgatatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTATCTCAATTCCTATGCAAGATGTAAAAAATGTGCCAACTGACCAAACA</left_flank>
        <right_flank>TTCTGATATTGTGCTAAACGATTTTTATTTAAAGGTACTCATGTTACTCT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCGTTACTGGAAGATATTTTCGTTTTCAGGATTCGTTTTCTCATTTTCACTGCTTTTTGTTAATTTTTCCGTTATTTTCCATCAGTAACGTCGTAAAAAAAATGTTGGACTGTTAAAGAATTGACTGAAAACGCAAAAAATATCGAGAAGAAACCTAAAAATGAAAATGTTTTTAGTGTACGGTAGCGGTCGTTGTGGAACCTTCGGCCACGGGTTCTCGTCCACAGATGGTCATCATAATATGGAGCTTTAAATCTCAGAAGTTATGAACTTCACAAATCTTATTCTTTCTAAATGGAATTCCACTAAAAAAAATCATTCAAACCAAATATTTTCTTACCATCTATAAACGAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTCTGCTGTAAAACCTGCAATAGAAAGGTGTTCACACTGTCAAATTTGTCCCAATTATCTCAATTCCTATGCAAGATGTAAAAAATGTGCCAACTGACCAAACAATTCTGATATTGTGCTAAACGATTTTTATTTAAAGGTACTCATGTTACTCTGAAATTTTGAAGCTTTGAGTTCAAAATATACAGAGATGATTCACAAAAAAAATATTATTCGAAATTCTGAATTTGCAGACTGAATGAAACTTTGGAAGTGGACTACTCGGGTGTCTGCTGCGAAGACATGTGTTCGGCCGGTCAAACAACTCTAACAGTTTGCGATTCGGAGGGCAAAACGCATACTGATATATGTTCTTTCTACGTTGTAAGTGTCCTTTTTTCTGTTTCCGATATATTCCTGCTGTCGTCACAAAGATCACTTTATTAGGTTCAAAAAATCATCACACATTTTTTATAGTCTGTAGCCTTTACCCTTCATGGCAACGATGATGACAATCTCAAATTCGGTTGGGCTTTTTTTGTATCCTGCCAACATGATCAGAAAATCCTATAGCAGATCATATACGTTCTCATGGCTGTGACGTAGAATAGGTGTAAACTATTTCT</canonical>
            <polymorphic>ACCGTTACTGGAAGATATTTTCGTTTTCAGGATTCGTTTTCTCATTTTCACTGCTTTTTGTTAATTTTTCCGTTATTTTCCATCAGTAACGTCGTAAAAAAAATGTTGGACTGTTAAAGAATTGACTGAAAACGCAAAAAATATCGAGAAGAAACCTAAAAATGAAAATGTTTTTAGTGTACGGTAGCGGTCGTTGTGGAACCTTCGGCCACGGGTTCTCGTCCACAGATGGTCATCATAATATGGAGCTTTAAATCTCAGAAGTTATGAACTTCACAAATCTTATTCTTTCTAAATGGAATTCCACTAAAAAAAATCATTCAAACCAAATATTTTCTTACCATCTATAAACGAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTCTGCTGTAAAACCTGCAATAGAAAGGTGTTCACACTGTCAAATTTGTCCCAATTATCTCAATTCCTATGCAAGATGTAAAAAATGTGCCAACTGACCAAACAMTTCTGATATTGTGCTAAACGATTTTTATTTAAAGGTACTCATGTTACTCTGAAATTTTGAAGCTTTGAGTTCAAAATATACAGAGATGATTCACAAAAAAAATATTATTCGAAATTCTGAATTTGCAGACTGAATGAAACTTTGGAAGTGGACTACTCGGGTGTCTGCTGCGAAGACATGTGTTCGGCCGGTCAAACAACTCTAACAGTTTGCGATTCGGAGGGCAAAACGCATACTGATATATGTTCTTTCTACGTTGTAAGTGTCCTTTTTTCTGTTTCCGATATATTCCTGCTGTCGTCACAAAGATCACTTTATTAGGTTCAAAAAATCATCACACATTTTTTATAGTCTGTAGCCTTTACCCTTCATGGCAACGATGATGACAATCTCAAATTCGGTTGGGCTTTTTTTGTATCCTGCCAACATGATCAGAAAATCCTATAGCAGATCATATACGTTCTCATGGCTGTGACGTAGAATAGGTGTAAACTATTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>275 180 106 75 62 60 57 54 54 42 10 9 9 7</canonical_bands>
                <polymorphic_bands>275 180 106 96 75 62 60 57 54 10 9 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAACCAAATATTTTCTTACCA</pcr_primer_p1>
		<pcr_primer_p2>CAAAGCTTCAAAATTTCAGAGTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCAAACCAAATATTTTCTTACCATCTATAAACGAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTCTGCTGTAAAACCTGCAATAGAAAGGTGTTCACACTGTCAAATTTGTCCCAATTATCTCAATTCCTATGCAAGATGTAAAAAATGTGCCAACTGACCAAACAATTCTGATATTGTGCTAAACGATTTTTATTTAAAGGTACTCATGTTACTCTGAAATTTTGAAGCTTTG</canonical_amplicon>
		<polymorphic_amplicon>TCAAACCAAATATTTTCTTACCATCTATAAACGAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTCTGCTGTAAAACCTGCAATAGAAAGGTGTTCACACTGTCAAATTTGTCCCAATTATCTCAATTCCTATGCAAGATGTAAAAAATGTGCCAACTGACCAAACAMTTCTGATATTGTGCTAAACGATTTTTATTTAAAGGTACTCATGTTACTCTGAAATTTTGAAGCTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2554</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>747651</contig_pos>
        <strand>+</strand>
        <context>ATGTCTCCGG[C/T]AATTTCGATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTGAGTTGTTCCTTCTCAGAAAAGTTTTACATTACTATATGTCTCCGG</left_flank>
        <right_flank>AATTTCGATTTCGAATACCGTAAATGCTCTACTAGAAGCTCACCCTATAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAAACTGAGAACGGGTCAAAGATTTACAAGATAATTGGTGTGTCTGGAAACTAAAACAATTGTTGTCAATTTTAGTTTCTGATCTACCAAAATTCGGTTTTAAAAAAAATTAATCTTTTGGATTTGACAATTAGACTGGATCGATTTCAACTCCATCAATGTCGATGGAGTTGTACTGGACGATCTTCGGTCGCTCGCGATGTTTTGAGATAATGTCGCAAATATCATCGTAGATCTGGAACAAGGAAATATTAGATAGCTTGGTTAGGAGATAGGGTTTGAAAAGTGTGTATTTTCTATGTCACCGTGAAAAATGTTACATATAAATACATACTCTTCAATTTCACCAAACTGATCTCTGCTTCCGAAGAGGATATCAAACAGTAATTCATTAAAACGTTCTAATAACAACAAAAGAATTCGGTCAGTTTATACATTTGTAACATCTTGAGTTGTTCCTTCTCAGAAAAGTTTTACATTACTATATGTCTCCGGCAATTTCGATTTCGAATACCGTAAATGCTCTACTAGAAGCTCACCCTATATCACTCGAACTCAATTATTTTAGTTCCTAGGTGAGATATCAAAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTTCAGTTAAAATGTGTTGACATATTTCAGAAGAACCAAGATAATTGTACTCGAAGTGCATTTATAGGATGGGCTTCTAACAGAGAAAGTTTATGAAGAACCCCAAAACTCAAAATTGACCCAATTCATTTTCGCTCCTAAGAATATTCAACTGTGTTACATTAACAATTTTTTAATAATAGTAAAGGGGAAAATTCTGCTGTTCAAAAAAATCAATATCTTCGGCAGAAATTAAGATAAATTAGGTCAAAATTGATATTTGATATGACGTACTTTTCTTTCACAGGTTTTACATTACTGTATCACTTTTGGAAATTTGAATTCCAGTATTAGTGTCACCGCATTTTTTCTCTCCTACCCAAATTGCCAACT</canonical>
            <polymorphic>AAAAAAAACTGAGAACGGGTCAAAGATTTACAAGATAATTGGTGTGTCTGGAAACTAAAACAATTGTTGTCAATTTTAGTTTCTGATCTACCAAAATTCGGTTTTAAAAAAAATTAATCTTTTGGATTTGACAATTAGACTGGATCGATTTCAACTCCATCAATGTCGATGGAGTTGTACTGGACGATCTTCGGTCGCTCGCGATGTTTTGAGATAATGTCGCAAATATCATCGTAGATCTGGAACAAGGAAATATTAGATAGCTTGGTTAGGAGATAGGGTTTGAAAAGTGTGTATTTTCTATGTCACCGTGAAAAATGTTACATATAAATACATACTCTTCAATTTCACCAAACTGATCTCTGCTTCCGAAGAGGATATCAAACAGTAATTCATTAAAACGTTCTAATAACAACAAAAGAATTCGGTCAGTTTATACATTTGTAACATCTTGAGTTGTTCCTTCTCAGAAAAGTTTTACATTACTATATGTCTCCGGYAATTTCGATTTCGAATACCGTAAATGCTCTACTAGAAGCTCACCCTATATCACTCGAACTCAATTATTTTAGTTCCTAGGTGAGATATCAAAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTTCAGTTAAAATGTGTTGACATATTTCAGAAGAACCAAGATAATTGTACTCGAAGTGCATTTATAGGATGGGCTTCTAACAGAGAAAGTTTATGAAGAACCCCAAAACTCAAAATTGACCCAATTCATTTTCGCTCCTAAGAATATTCAACTGTGTTACATTAACAATTTTTTAATAATAGTAAAGGGGAAAATTCTGCTGTTCAAAAAAATCAATATCTTCGGCAGAAATTAAGATAAATTAGGTCAAAATTGATATTTGATATGACGTACTTTTCTTTCACAGGTTTTACATTACTGTATCACTTTTGGAAATTTGAATTCCAGTATTAGTGTCACCGCATTTTTTCTCTCCTACCCAAATTGCCAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTTGAGTTGTTCCTTCTCAG</pcr_primer_p1>
		<pcr_primer_p2>TGTTAGAAGCCCATCCTATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>ATCTTGAGTTGTTCCTTCTCAGAAAAGTTTTACATTACTATATGTCTCCGGCAATTTCGATTTCGAATACCGTAAATGCTCTACTAGAAGCTCACCCTATATCACTCGAACTCAATTATTTTAGTTCCTAGGTGAGATATCAAAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTTCAGTTAAAATGTGTTGACATATTTCAGAAGAACCAAGATAATTGTACTCGAAGTGCATTTATAGGATGGGCTTCTAACA</canonical_amplicon>
		<polymorphic_amplicon>ATCTTGAGTTGTTCCTTCTCAGAAAAGTTTTACATTACTATATGTCTCCGGYAATTTCGATTTCGAATACCGTAAATGCTCTACTAGAAGCTCACCCTATATCACTCGAACTCAATTATTTTAGTTCCTAGGTGAGATATCAAAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTTCAGTTAAAATGTGTTGACATATTTCAGAAGAACCAAGATAATTGTACTCGAAGTGCATTTATAGGATGGGCTTCTAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2555</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>770449</contig_pos>
        <strand>+</strand>
        <context>TCAAGTTCAA[A/G]CTCCGAATCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGAAGACGTCATCGTGGAGGCCGTAGTTCTTCGTCTTCTTCAAGTTCAA</left_flank>
        <right_flank>CTCCGAATCTCGCTCTTATGAGTCTCGCTCGTACGAGAGAGATTACTATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTCCCAGAAAACGATCTTTTGGGTACAATATACGTGATAAACTGAAATCTATGCGGTAGCTTCCTTGTAAGTGCCGGTGAATCATAAGACGTCACAAGTTTCCAAACAAAATGCGATTTTTGTTTCTTGTTTTTTGATTAAAAAATTTCAACGCACGGTTTGCAAGAAAAAACAAACCTAGATATAAATACACAGACTTGGGTTCTGAGGAAGCATCCAAGCATTGAAATATGAAGTTCCTCCTTGTACTCTGTGCCCTAGTAGCCTTCGCTTTTGCAAACTACGGCGTCAGCAATGACAACTACCATGTGGGAGGCTATGGACATCATGATAACTAGTGAGTTCAATTCGATTGGTTACTTTTTGAATACGATATCTTTATAGTATCGACAGTCCATTCTACAAAGAGCCGCATCACAAACACCGCCGTGGAAGACACGGAAGACACGGAAGACGTCATCGTGGAGGCCGTAGTTCTTCGTCTTCTTCAAGTTCAAGCTCCGAATCTCGCTCTTATGAGTCTCGCTCGTACGAGAGAGATTACTATCCATACCCACACCATGTGCCAAGCTATGGAAATGTTGCTCATGAGGCTCCAGCTGCTACAGCTTACGGATCTCCATCCAACGATGTTCCTGCTCAAGCTCCATACGGTGTGAACACATTTGGAAAGAAGTAAAGTAATTTTAAGTGATAATTAATGTTTTTATGGTAATAAACACGTTTTTGTATCTAATGTTTCGATTTTCGCGTTTCGAAGAATCGTAATTGTTGGCAAACCATGTCGCAACTCTGCCTACTGAGGCAAACCGCTACAAAAACTTAACGATTTCTACACAATTTCCTTGTTATATTAGTTTCTTTTATATTGGATTTGGAAGAAGAAATCACTTTGAATTCCAGAAAAAATATTTTTGGGTTACTGTTATAAAAGAAAATAAAATCAACAAGGAATGAATGATAGGACAACAATTTATTCTGAAGATACCATGCTGAAA</canonical>
            <polymorphic>TATTCCCAGAAAACGATCTTTTGGGTACAATATACGTGATAAACTGAAATCTATGCGGTAGCTTCCTTGTAAGTGCCGGTGAATCATAAGACGTCACAAGTTTCCAAACAAAATGCGATTTTTGTTTCTTGTTTTTTGATTAAAAAATTTCAACGCACGGTTTGCAAGAAAAAACAAACCTAGATATAAATACACAGACTTGGGTTCTGAGGAAGCATCCAAGCATTGAAATATGAAGTTCCTCCTTGTACTCTGTGCCCTAGTAGCCTTCGCTTTTGCAAACTACGGCGTCAGCAATGACAACTACCATGTGGGAGGCTATGGACATCATGATAACTAGTGAGTTCAATTCGATTGGTTACTTTTTGAATACGATATCTTTATAGTATCGACAGTCCATTCTACAAAGAGCCGCATCACAAACACCGCCGTGGAAGACACGGAAGACACGGAAGACGTCATCGTGGAGGCCGTAGTTCTTCGTCTTCTTCAAGTTCAARCTCCGAATCTCGCTCTTATGAGTCTCGCTCGTACGAGAGAGATTACTATCCATACCCACACCATGTGCCAAGCTATGGAAATGTTGCTCATGAGGCTCCAGCTGCTACAGCTTACGGATCTCCATCCAACGATGTTCCTGCTCAAGCTCCATACGGTGTGAACACATTTGGAAAGAAGTAAAGTAATTTTAAGTGATAATTAATGTTTTTATGGTAATAAACACGTTTTTGTATCTAATGTTTCGATTTTCGCGTTTCGAAGAATCGTAATTGTTGGCAAACCATGTCGCAACTCTGCCTACTGAGGCAAACCGCTACAAAAACTTAACGATTTCTACACAATTTCCTTGTTATATTAGTTTCTTTTATATTGGATTTGGAAGAAGAAATCACTTTGAATTCCAGAAAAAATATTTTTGGGTTACTGTTATAAAAGAAAATAAAATCAACAAGGAATGAATGATAGGACAACAATTTATTCTGAAGATACCATGCTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>439 354 72 61 36 29 9</canonical_bands>
                <polymorphic_bands>511 354 61 36 29 9</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>354 205 93 72 61 59 52 36 30 23 9 6</canonical_bands>
                <polymorphic_bands>354 205 102 93 61 59 52 36 23 9 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTCAATTCGATTGGTTACTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGAGCAACATTTCCATAGC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGTTCAATTCGATTGGTTACTTTTTGAATACGATATCTTTATAGTATCGACAGTCCATTCTACAAAGAGCCGCATCACAAACACCGCCGTGGAAGACACGGAAGACACGGAAGACGTCATCGTGGAGGCCGTAGTTCTTCGTCTTCTTCAAGTTCAAGCTCCGAATCTCGCTCTTATGAGTCTCGCTCGTACGAGAGAGATTACTATCCATACCCACACCATGTGCCAAGCTATGGAAATGTTGCTCAT</canonical_amplicon>
		<polymorphic_amplicon>AGTTCAATTCGATTGGTTACTTTTTGAATACGATATCTTTATAGTATCGACAGTCCATTCTACAAAGAGCCGCATCACAAACACCGCCGTGGAAGACACGGAAGACACGGAAGACGTCATCGTGGAGGCCGTAGTTCTTCGTCTTCTTCAAGTTCAARCTCCGAATCTCGCTCTTATGAGTCTCGCTCGTACGAGAGAGATTACTATCCATACCCACACCATGTGCCAAGCTATGGAAATGTTGCTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2556</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>772062</contig_pos>
        <strand>+</strand>
        <context>TCTTGAGTGA[A/C]AGCTGGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGATGGCTGTTGTGTATGAGTGACCACTGGAATTGTCGTTTCTTGAGTGA</left_flank>
        <right_flank>AGCTGGAAAATTTAGTATACATTCCAACACAAAGTAAAACTTATGAAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGAAACTCTTTTTAGCATTGAGAGTCCGTTCTACAAGGAACCCCATTACAAACGTCGCCGTCATGGAAGGAAACATCGTCACTCCGATTCTAGATCCGTATTTCGTTCAGTTTCCGATGAGATTGAGTTTATTCCACCACCTGTGATTCCACCTGTGATTCCACCTGTGATTCCACCTGTGATTCCACCTGTCGATTGTTAAATGTTTATTTTTCAAAAATTACCAATAACCAAGATTTTCGCAATTTCAAAAATAATATATTTCAAACATTCTACTCTACAATGGTTTGATTGTTTGAGAACTTGACTTAATAGGTTTTGGATTATGGCGTTTTGGTTTAAATTGGGGAATCTGTCTTGGGATTTTCGAAGGAGCATTTCGCGGAGATTTCCCTTCTTTTGGTTTTGGTGTCTCGCTAGGAGATGGAGTACTGAGAGTTGAAGCAACTGATGGCTGTTGTGTATGAGTGACCACTGGAATTGTCGTTTCTTGAGTGACAGCTGGAAAATTTAGTATACATTCCAACACAAAGTAAAACTTATGAAATCTTACAACTTGGTGCTTCGCTTTCATAGCTTGAAACAGAAGGCGTCGGAACCCATCCGGGCCTTAGTCGATATCCTCCTTGTGCGTCAGATTTAACTCTTACACCATGTTCACCACCCACTACAGTCATCACTGGAGACAGATCTGAGTTTTCTGAAAATCAAAATTTCTGTGAACTGAACAATAGTATAGGCAAACCTCTGTTTCCTGGCATATGCCCAATGGTAGGTGGATCATACGACCGGCAACACATGACTTCTTTCACTTTTGTCCACACATCATTGCACCAGCTCAGCATCTAAATCGTGCAAAATAACATGACAAGGGAATTTTCAAACTTACAATTATAGGGCAAATAAGAGGGAAAACGAATTTTAGCCAAGTGATCAAAGTGTCAGCGTCTTGGGGTACATCTATACTGACATCAGAGAACTCGCGGCTGTTATATGTTT</canonical>
            <polymorphic>TAGAAACTCTTTTTAGCATTGAGAGTCCGTTCTACAAGGAACCCCATTACAAACGTCGCCGTCATGGAAGGAAACATCGTCACTCCGATTCTAGATCCGTATTTCGTTCAGTTTCCGATGAGATTGAGTTTATTCCACCACCTGTGATTCCACCTGTGATTCCACCTGTGATTCCACCTGTGATTCCACCTGTCGATTGTTAAATGTTTATTTTTCAAAAATTACCAATAACCAAGATTTTCGCAATTTCAAAAATAATATATTTCAAACATTCTACTCTACAATGGTTTGATTGTTTGAGAACTTGACTTAATAGGTTTTGGATTATGGCGTTTTGGTTTAAATTGGGGAATCTGTCTTGGGATTTTCGAAGGAGCATTTCGCGGAGATTTCCCTTCTTTTGGTTTTGGTGTCTCGCTAGGAGATGGAGTACTGAGAGTTGAAGCAACTGATGGCTGTTGTGTATGAGTGACCACTGGAATTGTCGTTTCTTGAGTGAMAGCTGGAAAATTTAGTATACATTCCAACACAAAGTAAAACTTATGAAATCTTACAACTTGGTGCTTCGCTTTCATAGCTTGAAACAGAAGGCGTCGGAACCCATCCGGGCCTTAGTCGATATCCTCCTTGTGCGTCAGATTTAACTCTTACACCATGTTCACCACCCACTACAGTCATCACTGGAGACAGATCTGAGTTTTCTGAAAATCAAAATTTCTGTGAACTGAACAATAGTATAGGCAAACCTCTGTTTCCTGGCATATGCCCAATGGTAGGTGGATCATACGACCGGCAACACATGACTTCTTTCACTTTTGTCCACACATCATTGCACCAGCTCAGCATCTAAATCGTGCAAAATAACATGACAAGGGAATTTTCAAACTTACAATTATAGGGCAAATAAGAGGGAAAACGAATTTTAGCCAAGTGATCAAAGTGTCAGCGTCTTGGGGTACATCTATACTGACATCAGAGAACTCGCGGCTGTTATATGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 390 78 27</canonical_bands>
                <polymorphic_bands>532 390 78</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>505 390 78 27</canonical_bands>
                <polymorphic_bands>532 390 78</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTAGGAGATGGAGTACTGAGA</pcr_primer_p1>
		<pcr_primer_p2>GTGGTGAACATGGTGTAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTAGGAGATGGAGTACTGAGAGTTGAAGCAACTGATGGCTGTTGTGTATGAGTGACCACTGGAATTGTCGTTTCTTGAGTGACAGCTGGAAAATTTAGTATACATTCCAACACAAAGTAAAACTTATGAAATCTTACAACTTGGTGCTTCGCTTTCATAGCTTGAAACAGAAGGCGTCGGAACCCATCCGGGCCTTAGTCGATATCCTCCTTGTGCGTCAGATTTAACTCTTACACCATGTTCACCAC</canonical_amplicon>
		<polymorphic_amplicon>GCTAGGAGATGGAGTACTGAGAGTTGAAGCAACTGATGGCTGTTGTGTATGAGTGACCACTGGAATTGTCGTTTCTTGAGTGAMAGCTGGAAAATTTAGTATACATTCCAACACAAAGTAAAACTTATGAAATCTTACAACTTGGTGCTTCGCTTTCATAGCTTGAAACAGAAGGCGTCGGAACCCATCCGGGCCTTAGTCGATATCCTCCTTGTGCGTCAGATTTAACTCTTACACCATGTTCACCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2557</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>771951</contig_pos>
        <strand>+</strand>
        <context>TTTCGCGGAG[A/T]TTTCCCTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTAAATTGGGGAATCTGTCTTGGGATTTTCGAAGGAGCATTTCGCGGAG</left_flank>
        <right_flank>TTTCCCTTCTTTTGGTTTTGGTGTCTCGCTAGGAGATGGAGTACTGAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATATATTCTGGTTGCTTTAGGCTCATCCTTTCCTTATGGAGGACATTATTATTACCCTACTCGTTATGGCTATCCTTCCAACTAGTAAGTTGAAAATGGTTTCAAAATATAGAAACTCTTTTTAGCATTGAGAGTCCGTTCTACAAGGAACCCCATTACAAACGTCGCCGTCATGGAAGGAAACATCGTCACTCCGATTCTAGATCCGTATTTCGTTCAGTTTCCGATGAGATTGAGTTTATTCCACCACCTGTGATTCCACCTGTGATTCCACCTGTGATTCCACCTGTGATTCCACCTGTCGATTGTTAAATGTTTATTTTTCAAAAATTACCAATAACCAAGATTTTCGCAATTTCAAAAATAATATATTTCAAACATTCTACTCTACAATGGTTTGATTGTTTGAGAACTTGACTTAATAGGTTTTGGATTATGGCGTTTTGGTTTAAATTGGGGAATCTGTCTTGGGATTTTCGAAGGAGCATTTCGCGGAGATTTCCCTTCTTTTGGTTTTGGTGTCTCGCTAGGAGATGGAGTACTGAGAGTTGAAGCAACTGATGGCTGTTGTGTATGAGTGACCACTGGAATTGTCGTTTCTTGAGTGACAGCTGGAAAATTTAGTATACATTCCAACACAAAGTAAAACTTATGAAATCTTACAACTTGGTGCTTCGCTTTCATAGCTTGAAACAGAAGGCGTCGGAACCCATCCGGGCCTTAGTCGATATCCTCCTTGTGCGTCAGATTTAACTCTTACACCATGTTCACCACCCACTACAGTCATCACTGGAGACAGATCTGAGTTTTCTGAAAATCAAAATTTCTGTGAACTGAACAATAGTATAGGCAAACCTCTGTTTCCTGGCATATGCCCAATGGTAGGTGGATCATACGACCGGCAACACATGACTTCTTTCACTTTTGTCCACACATCATTGCACCAGCTCAGCATCTAAATCGTGCAAAATAACATGACAAGGGAATTTTCAAACTTA</canonical>
            <polymorphic>TTATATATTCTGGTTGCTTTAGGCTCATCCTTTCCTTATGGAGGACATTATTATTACCCTACTCGTTATGGCTATCCTTCCAACTAGTAAGTTGAAAATGGTTTCAAAATATAGAAACTCTTTTTAGCATTGAGAGTCCGTTCTACAAGGAACCCCATTACAAACGTCGCCGTCATGGAAGGAAACATCGTCACTCCGATTCTAGATCCGTATTTCGTTCAGTTTCCGATGAGATTGAGTTTATTCCACCACCTGTGATTCCACCTGTGATTCCACCTGTGATTCCACCTGTGATTCCACCTGTCGATTGTTAAATGTTTATTTTTCAAAAATTACCAATAACCAAGATTTTCGCAATTTCAAAAATAATATATTTCAAACATTCTACTCTACAATGGTTTGATTGTTTGAGAACTTGACTTAATAGGTTTTGGATTATGGCGTTTTGGTTTAAATTGGGGAATCTGTCTTGGGATTTTCGAAGGAGCATTTCGCGGAGWTTTCCCTTCTTTTGGTTTTGGTGTCTCGCTAGGAGATGGAGTACTGAGAGTTGAAGCAACTGATGGCTGTTGTGTATGAGTGACCACTGGAATTGTCGTTTCTTGAGTGACAGCTGGAAAATTTAGTATACATTCCAACACAAAGTAAAACTTATGAAATCTTACAACTTGGTGCTTCGCTTTCATAGCTTGAAACAGAAGGCGTCGGAACCCATCCGGGCCTTAGTCGATATCCTCCTTGTGCGTCAGATTTAACTCTTACACCATGTTCACCACCCACTACAGTCATCACTGGAGACAGATCTGAGTTTTCTGAAAATCAAAATTTCTGTGAACTGAACAATAGTATAGGCAAACCTCTGTTTCCTGGCATATGCCCAATGGTAGGTGGATCATACGACCGGCAACACATGACTTCTTTCACTTTTGTCCACACATCATTGCACCAGCTCAGCATCTAAATCGTGCAAAATAACATGACAAGGGAATTTTCAAACTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTGAGAACTTGACTTAATAGG</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTTACTTTGTGTTGGAATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTTTGAGAACTTGACTTAATAGGTTTTGGATTATGGCGTTTTGGTTTAAATTGGGGAATCTGTCTTGGGATTTTCGAAGGAGCATTTCGCGGAGATTTCCCTTCTTTTGGTTTTGGTGTCTCGCTAGGAGATGGAGTACTGAGAGTTGAAGCAACTGATGGCTGTTGTGTATGAGTGACCACTGGAATTGTCGTTTCTTGAGTGACAGCTGGAAAATTTAGTATACATTCCAACACAAAGTAAAACTT</canonical_amplicon>
		<polymorphic_amplicon>TGTTTGAGAACTTGACTTAATAGGTTTTGGATTATGGCGTTTTGGTTTAAATTGGGGAATCTGTCTTGGGATTTTCGAAGGAGCATTTCGCGGAGWTTTCCCTTCTTTTGGTTTTGGTGTCTCGCTAGGAGATGGAGTACTGAGAGTTGAAGCAACTGATGGCTGTTGTGTATGAGTGACCACTGGAATTGTCGTTTCTTGAGTGACAGCTGGAAAATTTAGTATACATTCCAACACAAAGTAAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2559</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>876780</contig_pos>
        <strand>+</strand>
        <context>TCTCGCCACA[A/G]GTGAGCTACT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGGGAGCCGTTTTGGGTTTTCTGTTCCGCGGATTGCAGCTCTCGCCACA</left_flank>
        <right_flank>GTGAGCTACTGTAGAATTTTGTTCATTTCCACAAATTTTTAGAATATCAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTTTTTTCCTTTTTTCATTTCCTTTATGCATGCTGATCTGACAACACAATCTTCATTATTTTCTGTTGTGGCCTACTACTTCCCCCGGAAAAATAGAACAACGTTGTTTTATGTGGCAAAAAAAGAAACATCTTGAGTCTACAACAACCGGACAACTCTAATGAGGAATTTTTCGCGTGCAACGGGCATAACATCTTCTTCTCATTCTTCTTCGTTTTCACTACTTTTCACATCTCATTTTTGGACAACTAACCCTCCCGAATACAAGAATATGTACATTTGTTAGCATCTTTGAGTATTTTTCAGTGTCTTCATCGTCTTTATATTTCTATTCGTTGTAATAATTTTAGTCCGACTTTTTGATTTGAAACAAATTGTGTTAAATTTCAGATGGTATCTTGGTTACGGAAGAATCTGCTCCTAGTGATGACGGTCGGCTCCGTCGTCCTGGGAGCCGTTTTGGGTTTTCTGTTCCGCGGATTGCAGCTCTCGCCACAGGTGAGCTACTGTAGAATTTTGTTCATTTCCACAAATTTTTAGAATATCATGTACATTAGTTTCCCCGGAGAACTTCTCATGCACATGCTCAAAATGATGATTCTTCCACTTATCATGAGTTCTCTAATTTCTGGTCTCGCTCAATTGGATGCTCGCCAATCGGGAAAACTTGGATCTCTTGCTGTCACCTATTATATGTTCACAACTGTTGTTGCTGTCATTGTAAGCGTTCAAAAAGTTTCAGACAAATAGTTTGGGGTTTCAGACTGGTATCTTCCTGGTATTAGTGATCCATCCTGGAGATCCGACCATCAAGAAAGAGATTGGAACTGGTACCGAAGGAAAGACAGTCAGCACCGTGGATACCCTCTTGGATCTTCTCAGAAACATGTTCCCAGAAAATGTCGTTCAAGCCACCTTCCAACAAGTTCAGACCAAGTATATCAAAGTTCGGCCGAAAGTGGTGAAAAATAATGATTCTGCGACATTAGCAGCGTTAA</canonical>
            <polymorphic>CACTTTTTTCCTTTTTTCATTTCCTTTATGCATGCTGATCTGACAACACAATCTTCATTATTTTCTGTTGTGGCCTACTACTTCCCCCGGAAAAATAGAACAACGTTGTTTTATGTGGCAAAAAAAGAAACATCTTGAGTCTACAACAACCGGACAACTCTAATGAGGAATTTTTCGCGTGCAACGGGCATAACATCTTCTTCTCATTCTTCTTCGTTTTCACTACTTTTCACATCTCATTTTTGGACAACTAACCCTCCCGAATACAAGAATATGTACATTTGTTAGCATCTTTGAGTATTTTTCAGTGTCTTCATCGTCTTTATATTTCTATTCGTTGTAATAATTTTAGTCCGACTTTTTGATTTGAAACAAATTGTGTTAAATTTCAGATGGTATCTTGGTTACGGAAGAATCTGCTCCTAGTGATGACGGTCGGCTCCGTCGTCCTGGGAGCCGTTTTGGGTTTTCTGTTCCGCGGATTGCAGCTCTCGCCACARGTGAGCTACTGTAGAATTTTGTTCATTTCCACAAATTTTTAGAATATCATGTACATTAGTTTCCCCGGAGAACTTCTCATGCACATGCTCAAAATGATGATTCTTCCACTTATCATGAGTTCTCTAATTTCTGGTCTCGCTCAATTGGATGCTCGCCAATCGGGAAAACTTGGATCTCTTGCTGTCACCTATTATATGTTCACAACTGTTGTTGCTGTCATTGTAAGCGTTCAAAAAGTTTCAGACAAATAGTTTGGGGTTTCAGACTGGTATCTTCCTGGTATTAGTGATCCATCCTGGAGATCCGACCATCAAGAAAGAGATTGGAACTGGTACCGAAGGAAAGACAGTCAGCACCGTGGATACCCTCTTGGATCTTCTCAGAAACATGTTCCCAGAAAATGTCGTTCAAGCCACCTTCCAACAAGTTCAGACCAAGTATATCAAAGTTCGGCCGAAAGTGGTGAAAAATAATGATTCTGCGACATTAGCAGCGTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGTGTTAAATTTCAGATGGT</pcr_primer_p1>
		<pcr_primer_p2>GAGAACTCATGATAAGTGGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTGTGTTAAATTTCAGATGGTATCTTGGTTACGGAAGAATCTGCTCCTAGTGATGACGGTCGGCTCCGTCGTCCTGGGAGCCGTTTTGGGTTTTCTGTTCCGCGGATTGCAGCTCTCGCCACAGGTGAGCTACTGTAGAATTTTGTTCATTTCCACAAATTTTTAGAATATCATGTACATTAGTTTCCCCGGAGAACTTCTCATGCACATGCTCAAAATGATGATTCTTCCACTTATCATGAGTTCTC</canonical_amplicon>
		<polymorphic_amplicon>AATTGTGTTAAATTTCAGATGGTATCTTGGTTACGGAAGAATCTGCTCCTAGTGATGACGGTCGGCTCCGTCGTCCTGGGAGCCGTTTTGGGTTTTCTGTTCCGCGGATTGCAGCTCTCGCCACARGTGAGCTACTGTAGAATTTTGTTCATTTCCACAAATTTTTAGAATATCATGTACATTAGTTTCCCCGGAGAACTTCTCATGCACATGCTCAAAATGATGATTCTTCCACTTATCATGAGTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2560</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>880216</contig_pos>
        <strand>+</strand>
        <context>AAATTAAACC[C/G]TGGAATCAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGAAAAAAAGAAACATCTGTAACAAAAATTATTGGGAACCAAATTAAACC</left_flank>
        <right_flank>TGGAATCAGAAATCAAAGAGAACGCCTTCACTCTGAACAGTGCGTTTTCG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATTAGAATGTTTCACGATTTACCGAACTGTGCCATATTTTAGGATTTTCGAGAATGTAGAACATGACTACTATTTTCAGAACTCCCATAAAACATTATATTTCCTTCCCCACCCATCTCATCTCCAAATTTGTATTTGATCTGTGAGTCGGGGTGTTTGAGCGCTCTGAAAAATATGAATCAGTGTTATTTCTTTCCTTTTTTTATTTGCATTTGACTACTTTTATTACTTGGCAAAGATGTCGTTACACACACGTCAGTCCAAGAGAGAAAGAGAGACTGTTTCAATTTTTATCTTAAACGAGAACGATTATTAACAATTGAATTGCTTTTTATCAGTGTCAAGACGTGGCAGATTATATAGTTCTTCCACGGTTAACCCCATTTTTGTTGGCAGACACCGGGAATGGGTTTCTCCGAAAATTCGGGAAAAATTGACTGAAGATATGGAAAAAAAGAAACATCTGTAACAAAAATTATTGGGAACCAAATTAAACCGTGGAATCAGAAATCAAAGAGAACGCCTTCACTCTGAACAGTGCGTTTTCGCAATTTCACAACCATATAATCAAATCGTCACCTTTTTCGGAATAAGCCTAATCGATTCAAACTACTGATAATGCCATTTAGCAGTGTCACCGATTCCAACAGTGCACAATGATTTTAATGGGGTGTAACCAGGGTGTGTATGTGTATGGAAATGTAAAACAAAACGATGCAATAGGTGATATGACTCAAGAATAGCATAGACTGAGAGTCAGAGAGAGGGTGGGAAGAGTCTTGATTTGATTAGCTGAACCGTGCTCCGCACTTTTGCTCCGCCGTCGCACCCGATGGATCTTCTTTTAGTGATACTACTGGCTGCGTTCTGCACAACCGCCAGTGCCGTCGACAGTGAAGGAACTAACTTTGTCTTTGGTTTCGTCAGAAACGCTAATGACACAAGTATCGCAAATCAGGTCCTTACGGTCTCCGGTAATATTCCAAATGTAATTGTGT</canonical>
            <polymorphic>TGATTAGAATGTTTCACGATTTACCGAACTGTGCCATATTTTAGGATTTTCGAGAATGTAGAACATGACTACTATTTTCAGAACTCCCATAAAACATTATATTTCCTTCCCCACCCATCTCATCTCCAAATTTGTATTTGATCTGTGAGTCGGGGTGTTTGAGCGCTCTGAAAAATATGAATCAGTGTTATTTCTTTCCTTTTTTTATTTGCATTTGACTACTTTTATTACTTGGCAAAGATGTCGTTACACACACGTCAGTCCAAGAGAGAAAGAGAGACTGTTTCAATTTTTATCTTAAACGAGAACGATTATTAACAATTGAATTGCTTTTTATCAGTGTCAAGACGTGGCAGATTATATAGTTCTTCCACGGTTAACCCCATTTTTGTTGGCAGACACCGGGAATGGGTTTCTCCGAAAATTCGGGAAAAATTGACTGAAGATATGGAAAAAAAGAAACATCTGTAACAAAAATTATTGGGAACCAAATTAAACCSTGGAATCAGAAATCAAAGAGAACGCCTTCACTCTGAACAGTGCGTTTTCGCAATTTCACAACCATATAATCAAATCGTCACCTTTTTCGGAATAAGCCTAATCGATTCAAACTACTGATAATGCCATTTAGCAGTGTCACCGATTCCAACAGTGCACAATGATTTTAATGGGGTGTAACCAGGGTGTGTATGTGTATGGAAATGTAAAACAAAACGATGCAATAGGTGATATGACTCAAGAATAGCATAGACTGAGAGTCAGAGAGAGGGTGGGAAGAGTCTTGATTTGATTAGCTGAACCGTGCTCCGCACTTTTGCTCCGCCGTCGCACCCGATGGATCTTCTTTTAGTGATACTACTGGCTGCGTTCTGCACAACCGCCAGTGCCGTCGACAGTGAAGGAACTAACTTTGTCTTTGGTTTCGTCAGAAACGCTAATGACACAAGTATCGCAAATCAGGTCCTTACGGTCTCCGGTAATATTCCAAATGTAATTGTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>252 150 124 112 94 93 74 40 31 30</canonical_bands>
                <polymorphic_bands>252 164 150 112 94 93 74 31 30</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 371 127</canonical_bands>
                <polymorphic_bands>629 371</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>101 87 80 64 56 56 45 44 34 34 32 30 28 28 22 22 22 21 19 19 17 16 16 15 12 12 12 11 10 10 7 6 3 2 2 2 2 1</canonical_bands>
                <polymorphic_bands>129 87 80 64 56 56 45 44 34 34 32 30 28 22 22 22 21 19 19 17 16 16 15 12 12 12 11 10 10 7 6 3 2 2 2 2 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGCTTTTTATCAGTGTCAAG</pcr_primer_p1>
		<pcr_primer_p2>TTGATTATATGGTTGTGAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTGCTTTTTATCAGTGTCAAGACGTGGCAGATTATATAGTTCTTCCACGGTTAACCCCATTTTTGTTGGCAGACACCGGGAATGGGTTTCTCCGAAAATTCGGGAAAAATTGACTGAAGATATGGAAAAAAAGAAACATCTGTAACAAAAATTATTGGGAACCAAATTAAACCGTGGAATCAGAAATCAAAGAGAACGCCTTCACTCTGAACAGTGCGTTTTCGCAATTTCACAACCATATAATCAA</canonical_amplicon>
		<polymorphic_amplicon>AATTGCTTTTTATCAGTGTCAAGACGTGGCAGATTATATAGTTCTTCCACGGTTAACCCCATTTTTGTTGGCAGACACCGGGAATGGGTTTCTCCGAAAATTCGGGAAAAATTGACTGAAGATATGGAAAAAAAGAAACATCTGTAACAAAAATTATTGGGAACCAAATTAAACCSTGGAATCAGAAATCAAAGAGAACGCCTTCACTCTGAACAGTGCGTTTTCGCAATTTCACAACCATATAATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2561</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>880150</contig_pos>
        <strand>+</strand>
        <context>ATTCGGGAAA[A/T]ATTGACTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATTTTTGTTGGCAGACACCGGGAATGGGTTTCTCCGAAAATTCGGGAAA</left_flank>
        <right_flank>ATTGACTGAAGATATGGAAAAAAAGAAACATCTGTAACAAAAATTATTGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCAAAATTTAAAATTTAGGAGTCCTTCTATTAAAGGTTTCACGGATTTTGGATTTCAGGATGTGTTGATTAGAATGTTTCACGATTTACCGAACTGTGCCATATTTTAGGATTTTCGAGAATGTAGAACATGACTACTATTTTCAGAACTCCCATAAAACATTATATTTCCTTCCCCACCCATCTCATCTCCAAATTTGTATTTGATCTGTGAGTCGGGGTGTTTGAGCGCTCTGAAAAATATGAATCAGTGTTATTTCTTTCCTTTTTTTATTTGCATTTGACTACTTTTATTACTTGGCAAAGATGTCGTTACACACACGTCAGTCCAAGAGAGAAAGAGAGACTGTTTCAATTTTTATCTTAAACGAGAACGATTATTAACAATTGAATTGCTTTTTATCAGTGTCAAGACGTGGCAGATTATATAGTTCTTCCACGGTTAACCCCATTTTTGTTGGCAGACACCGGGAATGGGTTTCTCCGAAAATTCGGGAAAAATTGACTGAAGATATGGAAAAAAAGAAACATCTGTAACAAAAATTATTGGGAACCAAATTAAACCGTGGAATCAGAAATCAAAGAGAACGCCTTCACTCTGAACAGTGCGTTTTCGCAATTTCACAACCATATAATCAAATCGTCACCTTTTTCGGAATAAGCCTAATCGATTCAAACTACTGATAATGCCATTTAGCAGTGTCACCGATTCCAACAGTGCACAATGATTTTAATGGGGTGTAACCAGGGTGTGTATGTGTATGGAAATGTAAAACAAAACGATGCAATAGGTGATATGACTCAAGAATAGCATAGACTGAGAGTCAGAGAGAGGGTGGGAAGAGTCTTGATTTGATTAGCTGAACCGTGCTCCGCACTTTTGCTCCGCCGTCGCACCCGATGGATCTTCTTTTAGTGATACTACTGGCTGCGTTCTGCACAACCGCCAGTGCCGTCGACAGTGAAGGAACTAACTTTGTCTTTGGTTTCGTCAGAAACG</canonical>
            <polymorphic>GTCAAAATTTAAAATTTAGGAGTCCTTCTATTAAAGGTTTCACGGATTTTGGATTTCAGGATGTGTTGATTAGAATGTTTCACGATTTACCGAACTGTGCCATATTTTAGGATTTTCGAGAATGTAGAACATGACTACTATTTTCAGAACTCCCATAAAACATTATATTTCCTTCCCCACCCATCTCATCTCCAAATTTGTATTTGATCTGTGAGTCGGGGTGTTTGAGCGCTCTGAAAAATATGAATCAGTGTTATTTCTTTCCTTTTTTTATTTGCATTTGACTACTTTTATTACTTGGCAAAGATGTCGTTACACACACGTCAGTCCAAGAGAGAAAGAGAGACTGTTTCAATTTTTATCTTAAACGAGAACGATTATTAACAATTGAATTGCTTTTTATCAGTGTCAAGACGTGGCAGATTATATAGTTCTTCCACGGTTAACCCCATTTTTGTTGGCAGACACCGGGAATGGGTTTCTCCGAAAATTCGGGAAAWATTGACTGAAGATATGGAAAAAAAGAAACATCTGTAACAAAAATTATTGGGAACCAAATTAAACCGTGGAATCAGAAATCAAAGAGAACGCCTTCACTCTGAACAGTGCGTTTTCGCAATTTCACAACCATATAATCAAATCGTCACCTTTTTCGGAATAAGCCTAATCGATTCAAACTACTGATAATGCCATTTAGCAGTGTCACCGATTCCAACAGTGCACAATGATTTTAATGGGGTGTAACCAGGGTGTGTATGTGTATGGAAATGTAAAACAAAACGATGCAATAGGTGATATGACTCAAGAATAGCATAGACTGAGAGTCAGAGAGAGGGTGGGAAGAGTCTTGATTTGATTAGCTGAACCGTGCTCCGCACTTTTGCTCCGCCGTCGCACCCGATGGATCTTCTTTTAGTGATACTACTGGCTGCGTTCTGCACAACCGCCAGTGCCGTCGACAGTGAAGGAACTAACTTTGTCTTTGGTTTCGTCAGAAACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>383 182 159 98 61 42 32 15 11 7 5 5</canonical_bands>
                <polymorphic_bands>383 182 159 98 61 53 32 15 7 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGCTTTTTATCAGTGTCAAG</pcr_primer_p1>
		<pcr_primer_p2>TTGATTATATGGTTGTGAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTGCTTTTTATCAGTGTCAAGACGTGGCAGATTATATAGTTCTTCCACGGTTAACCCCATTTTTGTTGGCAGACACCGGGAATGGGTTTCTCCGAAAATTCGGGAAAAATTGACTGAAGATATGGAAAAAAAGAAACATCTGTAACAAAAATTATTGGGAACCAAATTAAACCGTGGAATCAGAAATCAAAGAGAACGCCTTCACTCTGAACAGTGCGTTTTCGCAATTTCACAACCATATAATCAA</canonical_amplicon>
		<polymorphic_amplicon>AATTGCTTTTTATCAGTGTCAAGACGTGGCAGATTATATAGTTCTTCCACGGTTAACCCCATTTTTGTTGGCAGACACCGGGAATGGGTTTCTCCGAAAATTCGGGAAAWATTGACTGAAGATATGGAAAAAAAGAAACATCTGTAACAAAAATTATTGGGAACCAAATTAAACCGTGGAATCAGAAATCAAAGAGAACGCCTTCACTCTGAACAGTGCGTTTTCGCAATTTCACAACCATATAATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2562</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>882087</contig_pos>
        <strand>+</strand>
        <context>GTCCACGTAC[G/T]TATCATGTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCCCCAGCCGTTTACATTGGAACTCGCACCCCAGATAAACGTCCACGTAC</left_flank>
        <right_flank>TATCATGTGACTTCTGATAAAGATGTTCTGGTTAGTTTTCTCTTCCACTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAACCGAATAGTTTTTAAATTTGTAAAAAGAAATTTTAACACTTTCTTAGTTCGAAATCAGCTTATTCTGCATTTTTGAGCAATGACGCACAATTGTTCGAAAAATCAAGTTGATTAAAATTATTCATTAATCATGTCTTCCATCTACTTTAATTACCTTTATCATGAAATGCCAAGATATGACATCAAATTTACCAAACGAAAACTATGCAGTTCTACCTACAACTTGGGGATCTAAGAGCTTCACATTCTCGCTGCCACCAGCGGTCTTGTCTGGCACCTATCAGTACGAGCAGATTCTCGTTCTTCCAACTACAGAGGTATTTTTTCTTTTTTCACAATATTCCTGAGGACCTTTTCCAAATCTTTCAGGGAACCACTCGTGTTAACGTTGTCGAAATCGGTAACGGTCAATCCTTCTACAGTTTCAATGTCACTTATGGAAACGCCCCAGCCGTTTACATTGGAACTCGCACCCCAGATAAACGTCCACGTACTTATCATGTGACTTCTGATAAAGATGTTCTGGTTAGTTTTCTCTTCCACTAGGAGTTTTTATTACATGGAGAGCATTTTATTGCTCAATTAGAGATCAACATCATTTCGTATTCAGATTGTTGCCGGAGTCACATGCGCTGGAGCCGATATAACCACGTGCGATCATGCGGCTTATATGCCTCATCCGCCAGCAGCTAGCGGTAAGAGCTTTGCAGATTGATCAACTTTCCGCCCTCACAAATCTCATTGCTATACAAGGATAATCTAGGAGTTTTTTATGCATATCATGAATAGTAAAATGAACCTGGATTGATGAAAAAACACAAAGAAAATGTGATCAATTAAGATTGCTATGCATACGACTACTACGACGATGATCATGTCAGCTACCTGCCAACAACCACACAATTTTTCACCGACATTCCTGGAACATGCTTGGTTGGACAAAATGTAAAATTTGAAATAGAAAAAAACAGACAAAAAATGAGTAATTCCAGATC</canonical>
            <polymorphic>TGGAACCGAATAGTTTTTAAATTTGTAAAAAGAAATTTTAACACTTTCTTAGTTCGAAATCAGCTTATTCTGCATTTTTGAGCAATGACGCACAATTGTTCGAAAAATCAAGTTGATTAAAATTATTCATTAATCATGTCTTCCATCTACTTTAATTACCTTTATCATGAAATGCCAAGATATGACATCAAATTTACCAAACGAAAACTATGCAGTTCTACCTACAACTTGGGGATCTAAGAGCTTCACATTCTCGCTGCCACCAGCGGTCTTGTCTGGCACCTATCAGTACGAGCAGATTCTCGTTCTTCCAACTACAGAGGTATTTTTTCTTTTTTCACAATATTCCTGAGGACCTTTTCCAAATCTTTCAGGGAACCACTCGTGTTAACGTTGTCGAAATCGGTAACGGTCAATCCTTCTACAGTTTCAATGTCACTTATGGAAACGCCCCAGCCGTTTACATTGGAACTCGCACCCCAGATAAACGTCCACGTACKTATCATGTGACTTCTGATAAAGATGTTCTGGTTAGTTTTCTCTTCCACTAGGAGTTTTTATTACATGGAGAGCATTTTATTGCTCAATTAGAGATCAACATCATTTCGTATTCAGATTGTTGCCGGAGTCACATGCGCTGGAGCCGATATAACCACGTGCGATCATGCGGCTTATATGCCTCATCCGCCAGCAGCTAGCGGTAAGAGCTTTGCAGATTGATCAACTTTCCGCCCTCACAAATCTCATTGCTATACAAGGATAATCTAGGAGTTTTTTATGCATATCATGAATAGTAAAATGAACCTGGATTGATGAAAAAACACAAAGAAAATGTGATCAATTAAGATTGCTATGCATACGACTACTACGACGATGATCATGTCAGCTACCTGCCAACAACCACACAATTTTTCACCGACATTCCTGGAACATGCTTGGTTGGACAAAATGTAAAATTTGAAATAGAAAAAAACAGACAAAAAATGAGTAATTCCAGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTCCAACTACAGAGGTATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAACTCCTAGTGGAAGAGAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTTCCAACTACAGAGGTATTTTTTCTTTTTTCACAATATTCCTGAGGACCTTTTCCAAATCTTTCAGGGAACCACTCGTGTTAACGTTGTCGAAATCGGTAACGGTCAATCCTTCTACAGTTTCAATGTCACTTATGGAAACGCCCCAGCCGTTTACATTGGAACTCGCACCCCAGATAAACGTCCACGTACTTATCATGTGACTTCTGATAAAGATGTTCTGGTTAGTTTTCTCTTCCACTAGGAGTTT</canonical_amplicon>
		<polymorphic_amplicon>TCTTCCAACTACAGAGGTATTTTTTCTTTTTTCACAATATTCCTGAGGACCTTTTCCAAATCTTTCAGGGAACCACTCGTGTTAACGTTGTCGAAATCGGTAACGGTCAATCCTTCTACAGTTTCAATGTCACTTATGGAAACGCCCCAGCCGTTTACATTGGAACTCGCACCCCAGATAAACGTCCACGTACKTATCATGTGACTTCTGATAAAGATGTTCTGGTTAGTTTTCTCTTCCACTAGGAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2563</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>933452</contig_pos>
        <strand>+</strand>
        <context>TCATTGGTTT[C/T]AAGCGACGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCACCACCAAGCCGTCGCTTCACTGTGACACCATTTGACATCATTGGTTT</left_flank>
        <right_flank>AAGCGACGTCTAGTTCAGCACCGCCCTTGTCGGTTTCGATCAACACACGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTAACAAGATTATAATGTGTCACTGTCGGGAAAAGTGCATATGAAGAAGGATATTAGATTCTATCTTATCTGGTTAAGAGAAAGATTCAAAAAATTCTTCCCAAAGAACAATTCACCCCCACTTCTCTCGGAATAGCCTAATTATGACGGGTCGTAAAACGAGACGACGTGAATATCATCATCGGGAGACATATTGGCTAGAGTAAGACGACGACAAGAGTACGCTCGTTGTTCGGACTGTTCTTTTCCCTTTTTACTCCCCCTTATTCAACCAAATTAGTGGGTCCATCCTCTTCGACGACCACCAGTCATTTCTTCATCTCTCCCACTTCCCGCTTTCCAATGCATCGCTCACCATCAGATCAGTCGACACCTACACCTTCCCCTGGTATTACCGACGTGTCATTTGACGATCTATTCCTTCTGAATCGCCCCACTCCGAACCGTCCACCACCAAGCCGTCGCTTCACTGTGACACCATTTGACATCATTGGTTTTAAGCGACGTCTAGTTCAGCACCGCCCTTGTCGGTTTCGATCAACACACGCGAAAACATTGACAATCATTTTTGCTGATAAAATCATTGCGCTTCGAGTTTTGATAAGCAGCGAAGCGCGAGCGCAGAAAAAATTCCTGTAGTTTCAATTATTCTAAAAATGCTGTCGGTGACCTACCCAATAATTGCAAAGACCAATAGTCAGATGCTAACTAAATTCCATCATTCCGAGCATCATCAAAGCACACCAAATCTTCATATTCAAATCCACAGGTTCAGCGGGGGTTCTAATTTTTGAAGAACATTTCGATAATTCTATATTTTTCAGTGGACCAATCTCTCGTACTCTCTCCTATCTTCGCTCTAAAATGGACTTGGCTCTCTCCACATCGTCTCTCTATCCATCTCGTGAAGACGTTCGCCAGTGGGAGAAGTCTTTCGATTCTTTGCTCAACAACAAATGTAAGTTGACAACATTCTTCTTTCTATCAATTATTTCACA</canonical>
            <polymorphic>TTTTAACAAGATTATAATGTGTCACTGTCGGGAAAAGTGCATATGAAGAAGGATATTAGATTCTATCTTATCTGGTTAAGAGAAAGATTCAAAAAATTCTTCCCAAAGAACAATTCACCCCCACTTCTCTCGGAATAGCCTAATTATGACGGGTCGTAAAACGAGACGACGTGAATATCATCATCGGGAGACATATTGGCTAGAGTAAGACGACGACAAGAGTACGCTCGTTGTTCGGACTGTTCTTTTCCCTTTTTACTCCCCCTTATTCAACCAAATTAGTGGGTCCATCCTCTTCGACGACCACCAGTCATTTCTTCATCTCTCCCACTTCCCGCTTTCCAATGCATCGCTCACCATCAGATCAGTCGACACCTACACCTTCCCCTGGTATTACCGACGTGTCATTTGACGATCTATTCCTTCTGAATCGCCCCACTCCGAACCGTCCACCACCAAGCCGTCGCTTCACTGTGACACCATTTGACATCATTGGTTTYAAGCGACGTCTAGTTCAGCACCGCCCTTGTCGGTTTCGATCAACACACGCGAAAACATTGACAATCATTTTTGCTGATAAAATCATTGCGCTTCGAGTTTTGATAAGCAGCGAAGCGCGAGCGCAGAAAAAATTCCTGTAGTTTCAATTATTCTAAAAATGCTGTCGGTGACCTACCCAATAATTGCAAAGACCAATAGTCAGATGCTAACTAAATTCCATCATTCCGAGCATCATCAAAGCACACCAAATCTTCATATTCAAATCCACAGGTTCAGCGGGGGTTCTAATTTTTGAAGAACATTTCGATAATTCTATATTTTTCAGTGGACCAATCTCTCGTACTCTCTCCTATCTTCGCTCTAAAATGGACTTGGCTCTCTCCACATCGTCTCTCTATCCATCTCGTGAAGACGTTCGCCAGTGGGAGAAGTCTTTCGATTCTTTGCTCAACAACAAATGTAAGTTGACAACATTCTTCTTTCTATCAATTATTTCACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>501 423 73 3</canonical_bands>
                <polymorphic_bands>924 73 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTTGACGATCTATTCCTTCT</pcr_primer_p1>
		<pcr_primer_p2>GAATAATTGAAACTACAGGAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CATTTGACGATCTATTCCTTCTGAATCGCCCCACTCCGAACCGTCCACCACCAAGCCGTCGCTTCACTGTGACACCATTTGACATCATTGGTTTTAAGCGACGTCTAGTTCAGCACCGCCCTTGTCGGTTTCGATCAACACACGCGAAAACATTGACAATCATTTTTGCTGATAAAATCATTGCGCTTCGAGTTTTGATAAGCAGCGAAGCGCGAGCGCAGAAAAAATTCCTGTAGTTTCAATTATTC</canonical_amplicon>
		<polymorphic_amplicon>CATTTGACGATCTATTCCTTCTGAATCGCCCCACTCCGAACCGTCCACCACCAAGCCGTCGCTTCACTGTGACACCATTTGACATCATTGGTTTYAAGCGACGTCTAGTTCAGCACCGCCCTTGTCGGTTTCGATCAACACACGCGAAAACATTGACAATCATTTTTGCTGATAAAATCATTGCGCTTCGAGTTTTGATAAGCAGCGAAGCGCGAGCGCAGAAAAAATTCCTGTAGTTTCAATTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2564</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>933341</contig_pos>
        <strand>+</strand>
        <context>CACCTTCCCC[A/T]GGTATTACCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCCAATGCATCGCTCACCATCAGATCAGTCGACACCTACACCTTCCCC</left_flank>
        <right_flank>GGTATTACCGACGTGTCATTTGACGATCTATTCCTTCTGAATCGCCCCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACACACATGTGCATAACATAATATTGCTTCCTGAGTTGACACTGGAGGTGCATGTGAAATGCACAATGTGAATTCAAAGTTTCAAAGAAGCCCTATATAATGGAAAAAGATTTTAACAAGATTATAATGTGTCACTGTCGGGAAAAGTGCATATGAAGAAGGATATTAGATTCTATCTTATCTGGTTAAGAGAAAGATTCAAAAAATTCTTCCCAAAGAACAATTCACCCCCACTTCTCTCGGAATAGCCTAATTATGACGGGTCGTAAAACGAGACGACGTGAATATCATCATCGGGAGACATATTGGCTAGAGTAAGACGACGACAAGAGTACGCTCGTTGTTCGGACTGTTCTTTTCCCTTTTTACTCCCCCTTATTCAACCAAATTAGTGGGTCCATCCTCTTCGACGACCACCAGTCATTTCTTCATCTCTCCCACTTCCCGCTTTCCAATGCATCGCTCACCATCAGATCAGTCGACACCTACACCTTCCCCTGGTATTACCGACGTGTCATTTGACGATCTATTCCTTCTGAATCGCCCCACTCCGAACCGTCCACCACCAAGCCGTCGCTTCACTGTGACACCATTTGACATCATTGGTTTTAAGCGACGTCTAGTTCAGCACCGCCCTTGTCGGTTTCGATCAACACACGCGAAAACATTGACAATCATTTTTGCTGATAAAATCATTGCGCTTCGAGTTTTGATAAGCAGCGAAGCGCGAGCGCAGAAAAAATTCCTGTAGTTTCAATTATTCTAAAAATGCTGTCGGTGACCTACCCAATAATTGCAAAGACCAATAGTCAGATGCTAACTAAATTCCATCATTCCGAGCATCATCAAAGCACACCAAATCTTCATATTCAAATCCACAGGTTCAGCGGGGGTTCTAATTTTTGAAGAACATTTCGATAATTCTATATTTTTCAGTGGACCAATCTCTCGTACTCTCTCCTATCTTCGCTCTAAAATGGACTTGGCTCTCTCCACATC</canonical>
            <polymorphic>GACACACATGTGCATAACATAATATTGCTTCCTGAGTTGACACTGGAGGTGCATGTGAAATGCACAATGTGAATTCAAAGTTTCAAAGAAGCCCTATATAATGGAAAAAGATTTTAACAAGATTATAATGTGTCACTGTCGGGAAAAGTGCATATGAAGAAGGATATTAGATTCTATCTTATCTGGTTAAGAGAAAGATTCAAAAAATTCTTCCCAAAGAACAATTCACCCCCACTTCTCTCGGAATAGCCTAATTATGACGGGTCGTAAAACGAGACGACGTGAATATCATCATCGGGAGACATATTGGCTAGAGTAAGACGACGACAAGAGTACGCTCGTTGTTCGGACTGTTCTTTTCCCTTTTTACTCCCCCTTATTCAACCAAATTAGTGGGTCCATCCTCTTCGACGACCACCAGTCATTTCTTCATCTCTCCCACTTCCCGCTTTCCAATGCATCGCTCACCATCAGATCAGTCGACACCTACACCTTCCCCWGGTATTACCGACGTGTCATTTGACGATCTATTCCTTCTGAATCGCCCCACTCCGAACCGTCCACCACCAAGCCGTCGCTTCACTGTGACACCATTTGACATCATTGGTTTTAAGCGACGTCTAGTTCAGCACCGCCCTTGTCGGTTTCGATCAACACACGCGAAAACATTGACAATCATTTTTGCTGATAAAATCATTGCGCTTCGAGTTTTGATAAGCAGCGAAGCGCGAGCGCAGAAAAAATTCCTGTAGTTTCAATTATTCTAAAAATGCTGTCGGTGACCTACCCAATAATTGCAAAGACCAATAGTCAGATGCTAACTAAATTCCATCATTCCGAGCATCATCAAAGCACACCAAATCTTCATATTCAAATCCACAGGTTCAGCGGGGGTTCTAATTTTTGAAGAACATTTCGATAATTCTATATTTTTCAGTGGACCAATCTCTCGTACTCTCTCCTATCTTCGCTCTAAAATGGACTTGGCTCTCTCCACATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTGTTCTTTTCCCTTTTTACT</pcr_primer_p1>
		<pcr_primer_p2>CAAATGGTGTCACAGTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GACTGTTCTTTTCCCTTTTTACTCCCCCTTATTCAACCAAATTAGTGGGTCCATCCTCTTCGACGACCACCAGTCATTTCTTCATCTCTCCCACTTCCCGCTTTCCAATGCATCGCTCACCATCAGATCAGTCGACACCTACACCTTCCCCTGGTATTACCGACGTGTCATTTGACGATCTATTCCTTCTGAATCGCCCCACTCCGAACCGTCCACCACCAAGCCGTCGCTTCACTGTGACACCATTTG</canonical_amplicon>
		<polymorphic_amplicon>GACTGTTCTTTTCCCTTTTTACTCCCCCTTATTCAACCAAATTAGTGGGTCCATCCTCTTCGACGACCACCAGTCATTTCTTCATCTCTCCCACTTCCCGCTTTCCAATGCATCGCTCACCATCAGATCAGTCGACACCTACACCTTCCCCWGGTATTACCGACGTGTCATTTGACGATCTATTCCTTCTGAATCGCCCCACTCCGAACCGTCCACCACCAAGCCGTCGCTTCACTGTGACACCATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2565</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>933319</contig_pos>
        <strand>+</strand>
        <context>CCATCAGMTC[A/C]GTCGACACCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTCATCTCTCCCACTTCCCGCTTTCCAATGCATCGCTCACCATCAGATC</left_flank>
        <right_flank>GTCGACACCTACACCTTCCCCTGGTATTACCGACGTGTCATTTGACGATC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGAATATCAACTTTCTTTGAGACACACATGTGCATAACATAATATTGCTTCCTGAGTTGACACTGGAGGTGCATGTGAAATGCACAATGTGAATTCAAAGTTTCAAAGAAGCCCTATATAATGGAAAAAGATTTTAACAAGATTATAATGTGTCACTGTCGGGAAAAGTGCATATGAAGAAGGATATTAGATTCTATCTTATCTGGTTAAGAGAAAGATTCAAAAAATTCTTCCCAAAGAACAATTCACCCCCACTTCTCTCGGAATAGCCTAATTATGACGGGTCGTAAAACGAGACGACGTGAATATCATCATCGGGAGACATATTGGCTAGAGTAAGACGACGACAAGAGTACGCTCGTTGTTCGGACTGTTCTTTTCCCTTTTTACTCCCCCTTATTCAACCAAATTAGTGGGTCCATCCTCTTCGACGACCACCAGTCATTTCTTCATCTCTCCCACTTCCCGCTTTCCAATGCATCGCTCACCATCAGATCAGTCGACACCTACACCTTCCCCTGGTATTACCGACGTGTCATTTGACGATCTATTCCTTCTGAATCGCCCCACTCCGAACCGTCCACCACCAAGCCGTCGCTTCACTGTGACACCATTTGACATCATTGGTTTTAAGCGACGTCTAGTTCAGCACCGCCCTTGTCGGTTTCGATCAACACACGCGAAAACATTGACAATCATTTTTGCTGATAAAATCATTGCGCTTCGAGTTTTGATAAGCAGCGAAGCGCGAGCGCAGAAAAAATTCCTGTAGTTTCAATTATTCTAAAAATGCTGTCGGTGACCTACCCAATAATTGCAAAGACCAATAGTCAGATGCTAACTAAATTCCATCATTCCGAGCATCATCAAAGCACACCAAATCTTCATATTCAAATCCACAGGTTCAGCGGGGGTTCTAATTTTTGAAGAACATTTCGATAATTCTATATTTTTCAGTGGACCAATCTCTCGTACTCTCTCCTATCTTCGCTCTAAAA</canonical>
            <polymorphic>AGAGAATATCAACTTTCTTTGAGACACACATGTGCATAACATAATATTGCTTCCTGAGTTGACACTGGAGGTGCATGTGAAATGCACAATGTGAATTCAAAGTTTCAAAGAAGCCCTATATAATGGAAAAAGATTTTAACAAGATTATAATGTGTCACTGTCGGGAAAAGTGCATATGAAGAAGGATATTAGATTCTATCTTATCTGGTTAAGAGAAAGATTCAAAAAATTCTTCCCAAAGAACAATTCACCCCCACTTCTCTCGGAATAGCCTAATTATGACGGGTCGTAAAACGAGACGACGTGAATATCATCATCGGGAGACATATTGGCTAGAGTAAGACGACGACAAGAGTACGCTCGTTGTTCGGACTGTTCTTTTCCCTTTTTACTCCCCCTTATTCAACCAAATTAGTGGGTCCATCCTCTTCGACGACCACCAGTCATTTCTTCATCTCTCCCACTTCCCGCTTTCCAATGCATCGCTCACCATCAGATCMGTCGACACCTACACCTTCCCCTGGTATTACCGACGTGTCATTTGACGATCTATTCCTTCTGAATCGCCCCACTCCGAACCGTCCACCACCAAGCCGTCGCTTCACTGTGACACCATTTGACATCATTGGTTTTAAGCGACGTCTAGTTCAGCACCGCCCTTGTCGGTTTCGATCAACACACGCGAAAACATTGACAATCATTTTTGCTGATAAAATCATTGCGCTTCGAGTTTTGATAAGCAGCGAAGCGCGAGCGCAGAAAAAATTCCTGTAGTTTCAATTATTCTAAAAATGCTGTCGGTGACCTACCCAATAATTGCAAAGACCAATAGTCAGATGCTAACTAAATTCCATCATTCCGAGCATCATCAAAGCACACCAAATCTTCATATTCAAATCCACAGGTTCAGCGGGGGTTCTAATTTTTGAAGAACATTTCGATAATTCTATATTTTTCAGTGGACCAATCTCTCGTACTCTCTCCTATCTTCGCTCTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATCATCATCGGGAGACATA</pcr_primer_p1>
		<pcr_primer_p2>GGAATAGATCGTCAAATGACAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATATCATCATCGGGAGACATATTGGCTAGAGTAAGACGACGACAAGAGTACGCTCGTTGTTCGGACTGTTCTTTTCCCTTTTTACTCCCCCTTATTCAACCAAATTAGTGGGTCCATCCTCTTCGACGACCACCAGTCATTTCTTCATCTCTCCCACTTCCCGCTTTCCAATGCATCGCTCACCATCAGATCAGTCGACACCTACACCTTCCCCTGGTATTACCGACGTGTCATTTGACGATCTATTCC</canonical_amplicon>
		<polymorphic_amplicon>AATATCATCATCGGGAGACATATTGGCTAGAGTAAGACGACGACAAGAGTACGCTCGTTGTTCGGACTGTTCTTTTCCCTTTTTACTCCCCCTTATTCAACCAAATTAGTGGGTCCATCCTCTTCGACGACCACCAGTCATTTCTTCATCTCTCCCACTTCCCGCTTTCCAATGCATCGCTCACCATCAGATCMGTCGACACCTACACCTTCCCCTGGTATTACCGACGTGTCATTTGACGATCTATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2566</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>933316</contig_pos>
        <strand>+</strand>
        <context>TCACCATCAG[A/C]TCMGTCGACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCTTCATCTCTCCCACTTCCCGCTTTCCAATGCATCGCTCACCATCAG</left_flank>
        <right_flank>TCAGTCGACACCTACACCTTCCCCTGGTATTACCGACGTGTCATTTGACG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAGAGAATATCAACTTTCTTTGAGACACACATGTGCATAACATAATATTGCTTCCTGAGTTGACACTGGAGGTGCATGTGAAATGCACAATGTGAATTCAAAGTTTCAAAGAAGCCCTATATAATGGAAAAAGATTTTAACAAGATTATAATGTGTCACTGTCGGGAAAAGTGCATATGAAGAAGGATATTAGATTCTATCTTATCTGGTTAAGAGAAAGATTCAAAAAATTCTTCCCAAAGAACAATTCACCCCCACTTCTCTCGGAATAGCCTAATTATGACGGGTCGTAAAACGAGACGACGTGAATATCATCATCGGGAGACATATTGGCTAGAGTAAGACGACGACAAGAGTACGCTCGTTGTTCGGACTGTTCTTTTCCCTTTTTACTCCCCCTTATTCAACCAAATTAGTGGGTCCATCCTCTTCGACGACCACCAGTCATTTCTTCATCTCTCCCACTTCCCGCTTTCCAATGCATCGCTCACCATCAGATCAGTCGACACCTACACCTTCCCCTGGTATTACCGACGTGTCATTTGACGATCTATTCCTTCTGAATCGCCCCACTCCGAACCGTCCACCACCAAGCCGTCGCTTCACTGTGACACCATTTGACATCATTGGTTTTAAGCGACGTCTAGTTCAGCACCGCCCTTGTCGGTTTCGATCAACACACGCGAAAACATTGACAATCATTTTTGCTGATAAAATCATTGCGCTTCGAGTTTTGATAAGCAGCGAAGCGCGAGCGCAGAAAAAATTCCTGTAGTTTCAATTATTCTAAAAATGCTGTCGGTGACCTACCCAATAATTGCAAAGACCAATAGTCAGATGCTAACTAAATTCCATCATTCCGAGCATCATCAAAGCACACCAAATCTTCATATTCAAATCCACAGGTTCAGCGGGGGTTCTAATTTTTGAAGAACATTTCGATAATTCTATATTTTTCAGTGGACCAATCTCTCGTACTCTCTCCTATCTTCGCTCTA</canonical>
            <polymorphic>TTGAGAGAATATCAACTTTCTTTGAGACACACATGTGCATAACATAATATTGCTTCCTGAGTTGACACTGGAGGTGCATGTGAAATGCACAATGTGAATTCAAAGTTTCAAAGAAGCCCTATATAATGGAAAAAGATTTTAACAAGATTATAATGTGTCACTGTCGGGAAAAGTGCATATGAAGAAGGATATTAGATTCTATCTTATCTGGTTAAGAGAAAGATTCAAAAAATTCTTCCCAAAGAACAATTCACCCCCACTTCTCTCGGAATAGCCTAATTATGACGGGTCGTAAAACGAGACGACGTGAATATCATCATCGGGAGACATATTGGCTAGAGTAAGACGACGACAAGAGTACGCTCGTTGTTCGGACTGTTCTTTTCCCTTTTTACTCCCCCTTATTCAACCAAATTAGTGGGTCCATCCTCTTCGACGACCACCAGTCATTTCTTCATCTCTCCCACTTCCCGCTTTCCAATGCATCGCTCACCATCAGMTCAGTCGACACCTACACCTTCCCCTGGTATTACCGACGTGTCATTTGACGATCTATTCCTTCTGAATCGCCCCACTCCGAACCGTCCACCACCAAGCCGTCGCTTCACTGTGACACCATTTGACATCATTGGTTTTAAGCGACGTCTAGTTCAGCACCGCCCTTGTCGGTTTCGATCAACACACGCGAAAACATTGACAATCATTTTTGCTGATAAAATCATTGCGCTTCGAGTTTTGATAAGCAGCGAAGCGCGAGCGCAGAAAAAATTCCTGTAGTTTCAATTATTCTAAAAATGCTGTCGGTGACCTACCCAATAATTGCAAAGACCAATAGTCAGATGCTAACTAAATTCCATCATTCCGAGCATCATCAAAGCACACCAAATCTTCATATTCAAATCCACAGGTTCAGCGGGGGTTCTAATTTTTGAAGAACATTTCGATAATTCTATATTTTTCAGTGGACCAATCTCTCGTACTCTCTCCTATCTTCGCTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>498 327 124 51</canonical_bands>
                <polymorphic_bands>549 327 124</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>268 260 137 125 105 65 25 15</canonical_bands>
                <polymorphic_bands>268 260 190 137 105 25 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATATCATCATCGGGAGACATA</pcr_primer_p1>
		<pcr_primer_p2>GGAATAGATCGTCAAATGACAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATATCATCATCGGGAGACATATTGGCTAGAGTAAGACGACGACAAGAGTACGCTCGTTGTTCGGACTGTTCTTTTCCCTTTTTACTCCCCCTTATTCAACCAAATTAGTGGGTCCATCCTCTTCGACGACCACCAGTCATTTCTTCATCTCTCCCACTTCCCGCTTTCCAATGCATCGCTCACCATCAGATCAGTCGACACCTACACCTTCCCCTGGTATTACCGACGTGTCATTTGACGATCTATTCC</canonical_amplicon>
		<polymorphic_amplicon>AATATCATCATCGGGAGACATATTGGCTAGAGTAAGACGACGACAAGAGTACGCTCGTTGTTCGGACTGTTCTTTTCCCTTTTTACTCCCCCTTATTCAACCAAATTAGTGGGTCCATCCTCTTCGACGACCACCAGTCATTTCTTCATCTCTCCCACTTCCCGCTTTCCAATGCATCGCTCACCATCAGMTCAGTCGACACCTACACCTTCCCCTGGTATTACCGACGTGTCATTTGACGATCTATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2567</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>972870</contig_pos>
        <strand>+</strand>
        <context>GGAATGGACA[C/T]TTTCCACATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCATAGGTTCCAGAATGTTCTTCTATCACTTATTCATGATGGAATGGACA</left_flank>
        <right_flank>TTTCCACATAGCTGCTTGTTCCAAATCTCTGAAAAAAACCTCTGAATAGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAACGGATAGAAAACTCCGTGTCAGTGTTTTGGTCCCGATAACAAGTTTAATTGCCTTAAAATGGCGTCATCTCCATTTTGGAGTAAAGTTTTTTAATGAGTGCAAAAGCGCAGGAAATACTTTTTTGCTGATGGTCCCATAAAGTGACACCATAGACACATCAACACCACACCCACATATTCAGAACGACTGCTGCTGCTTCCGAGTTGACCTGAAACCCGAGATCATCTATTTTCATTGTTGACTTTGACTGCAAAAATGACTGGTTCTGTGTAAAAAATCTGGAAGATTGGTCAATGCGTGGGAGGCTTCGCTCAGTTACCCGTTCGCGCATGATCATAAAATAAGTAGCCCAAGGAAGGAAGCTATAAAAGAAGAGAAGACGAAATGATAGGTGAAATGATGAATGGTCCCTTCCTCTTGCATAGGAAATGATTTTTCAGACTCCATAGGTTCCAGAATGTTCTTCTATCACTTATTCATGATGGAATGGACACTTTCCACATAGCTGCTTGTTCCAAATCTCTGAAAAAAACCTCTGAATAGTCAGATTATAAACAAGTAAGAGTTCAGAGGCTGAGAATCTAGTGAACACAAAACTTTTCTCTCCTCCCGAATCTGATGAGCGTCGTCATTTCTAGAAAGCCGGTGGTCGTTTCCAGAGAGCCGCCGGTTCCTCTAAAAAACTCTTTCAACCATGTTTGTTGTTTTTCACCCGAAATTCGAAAATCCATTCTGGTGAAAGCAAATTTTGGAAATGTCATTCACCCTAGCCTCGGCGACTTTATACATTTCATTCATCTCCCAGCTAAATTTTACGACTTTTCCTTCCAAACCTGCCATTATTCTTTTTTTTTCTCCCGTTTTCCTTTTAACAAAAGGACACTTCTTAGTCGTGCCTTTTTCTGTTCCACTAAACACATATCCTTGTTTATTAGTGCCCATCAGATGCGAAAAAAAGCGAGAGACTATTCGAGACGAAGAGGGACGGCCCCCG</canonical>
            <polymorphic>GAAAACGGATAGAAAACTCCGTGTCAGTGTTTTGGTCCCGATAACAAGTTTAATTGCCTTAAAATGGCGTCATCTCCATTTTGGAGTAAAGTTTTTTAATGAGTGCAAAAGCGCAGGAAATACTTTTTTGCTGATGGTCCCATAAAGTGACACCATAGACACATCAACACCACACCCACATATTCAGAACGACTGCTGCTGCTTCCGAGTTGACCTGAAACCCGAGATCATCTATTTTCATTGTTGACTTTGACTGCAAAAATGACTGGTTCTGTGTAAAAAATCTGGAAGATTGGTCAATGCGTGGGAGGCTTCGCTCAGTTACCCGTTCGCGCATGATCATAAAATAAGTAGCCCAAGGAAGGAAGCTATAAAAGAAGAGAAGACGAAATGATAGGTGAAATGATGAATGGTCCCTTCCTCTTGCATAGGAAATGATTTTTCAGACTCCATAGGTTCCAGAATGTTCTTCTATCACTTATTCATGATGGAATGGACAYTTTCCACATAGCTGCTTGTTCCAAATCTCTGAAAAAAACCTCTGAATAGTCAGATTATAAACAAGTAAGAGTTCAGAGGCTGAGAATCTAGTGAACACAAAACTTTTCTCTCCTCCCGAATCTGATGAGCGTCGTCATTTCTAGAAAGCCGGTGGTCGTTTCCAGAGAGCCGCCGGTTCCTCTAAAAAACTCTTTCAACCATGTTTGTTGTTTTTCACCCGAAATTCGAAAATCCATTCTGGTGAAAGCAAATTTTGGAAATGTCATTCACCCTAGCCTCGGCGACTTTATACATTTCATTCATCTCCCAGCTAAATTTTACGACTTTTCCTTCCAAACCTGCCATTATTCTTTTTTTTTCTCCCGTTTTCCTTTTAACAAAAGGACACTTCTTAGTCGTGCCTTTTTCTGTTCCACTAAACACATATCCTTGTTTATTAGTGCCCATCAGATGCGAAAAAAAGCGAGAGACTATTCGAGACGAAGAGGGACGGCCCCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>118 98 94 87 77 76 63 57 57 44 30 27 26 23 22 20 15 13 9 8 7 7 6 4 4 3 3 2</canonical_bands>
                <polymorphic_bands>118 98 94 87 77 76 63 57 57 44 30 29 27 26 23 20 15 13 9 8 7 6 4 4 3 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGAAGGAAGCTATAAAAGAAGA</pcr_primer_p1>
		<pcr_primer_p2>AGTTTTGTGTTCACTAGATTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGGAAGGAAGCTATAAAAGAAGAGAAGACGAAATGATAGGTGAAATGATGAATGGTCCCTTCCTCTTGCATAGGAAATGATTTTTCAGACTCCATAGGTTCCAGAATGTTCTTCTATCACTTATTCATGATGGAATGGACACTTTCCACATAGCTGCTTGTTCCAAATCTCTGAAAAAAACCTCTGAATAGTCAGATTATAAACAAGTAAGAGTTCAGAGGCTGAGAATCTAGTGAACACAAAACT</canonical_amplicon>
		<polymorphic_amplicon>AGGAAGGAAGCTATAAAAGAAGAGAAGACGAAATGATAGGTGAAATGATGAATGGTCCCTTCCTCTTGCATAGGAAATGATTTTTCAGACTCCATAGGTTCCAGAATGTTCTTCTATCACTTATTCATGATGGAATGGACAYTTTCCACATAGCTGCTTGTTCCAAATCTCTGAAAAAAACCTCTGAATAGTCAGATTATAAACAAGTAAGAGTTCAGAGGCTGAGAATCTAGTGAACACAAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2568</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>972717</contig_pos>
        <strand>+</strand>
        <context>TGATCATAAA[A/C]TAAGTAGCCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCAATGCGTGGGAGGCTTCGCTCAGTTACCCGTTCGCGCATGATCATAAA</left_flank>
        <right_flank>TAAGTAGCCCAAGGAAGGAAGCTATAAAAGAAGAGAAGACGAAATGATAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTGAAATTTTTAGAGCCTCTATTTCTGGAGGCGCTTATAATATATTCATTCTCAGAGAACGGCATTCATCTTCTCTCTCCCCGCCTAAAAAAAGACGATATAAAAAACTACACCACTTTTTTTAGGAGAGCATTCTAAACAAGAAAGAAGCGAAAACGGATAGAAAACTCCGTGTCAGTGTTTTGGTCCCGATAACAAGTTTAATTGCCTTAAAATGGCGTCATCTCCATTTTGGAGTAAAGTTTTTTAATGAGTGCAAAAGCGCAGGAAATACTTTTTTGCTGATGGTCCCATAAAGTGACACCATAGACACATCAACACCACACCCACATATTCAGAACGACTGCTGCTGCTTCCGAGTTGACCTGAAACCCGAGATCATCTATTTTCATTGTTGACTTTGACTGCAAAAATGACTGGTTCTGTGTAAAAAATCTGGAAGATTGGTCAATGCGTGGGAGGCTTCGCTCAGTTACCCGTTCGCGCATGATCATAAAATAAGTAGCCCAAGGAAGGAAGCTATAAAAGAAGAGAAGACGAAATGATAGGTGAAATGATGAATGGTCCCTTCCTCTTGCATAGGAAATGATTTTTCAGACTCCATAGGTTCCAGAATGTTCTTCTATCACTTATTCATGATGGAATGGACACTTTCCACATAGCTGCTTGTTCCAAATCTCTGAAAAAAACCTCTGAATAGTCAGATTATAAACAAGTAAGAGTTCAGAGGCTGAGAATCTAGTGAACACAAAACTTTTCTCTCCTCCCGAATCTGATGAGCGTCGTCATTTCTAGAAAGCCGGTGGTCGTTTCCAGAGAGCCGCCGGTTCCTCTAAAAAACTCTTTCAACCATGTTTGTTGTTTTTCACCCGAAATTCGAAAATCCATTCTGGTGAAAGCAAATTTTGGAAATGTCATTCACCCTAGCCTCGGCGACTTTATACATTTCATTCATCTCCCAGCTAAATTTTACGACTTTTCCTTCCAAACCTGCCATT</canonical>
            <polymorphic>AGCTGAAATTTTTAGAGCCTCTATTTCTGGAGGCGCTTATAATATATTCATTCTCAGAGAACGGCATTCATCTTCTCTCTCCCCGCCTAAAAAAAGACGATATAAAAAACTACACCACTTTTTTTAGGAGAGCATTCTAAACAAGAAAGAAGCGAAAACGGATAGAAAACTCCGTGTCAGTGTTTTGGTCCCGATAACAAGTTTAATTGCCTTAAAATGGCGTCATCTCCATTTTGGAGTAAAGTTTTTTAATGAGTGCAAAAGCGCAGGAAATACTTTTTTGCTGATGGTCCCATAAAGTGACACCATAGACACATCAACACCACACCCACATATTCAGAACGACTGCTGCTGCTTCCGAGTTGACCTGAAACCCGAGATCATCTATTTTCATTGTTGACTTTGACTGCAAAAATGACTGGTTCTGTGTAAAAAATCTGGAAGATTGGTCAATGCGTGGGAGGCTTCGCTCAGTTACCCGTTCGCGCATGATCATAAAMTAAGTAGCCCAAGGAAGGAAGCTATAAAAGAAGAGAAGACGAAATGATAGGTGAAATGATGAATGGTCCCTTCCTCTTGCATAGGAAATGATTTTTCAGACTCCATAGGTTCCAGAATGTTCTTCTATCACTTATTCATGATGGAATGGACACTTTCCACATAGCTGCTTGTTCCAAATCTCTGAAAAAAACCTCTGAATAGTCAGATTATAAACAAGTAAGAGTTCAGAGGCTGAGAATCTAGTGAACACAAAACTTTTCTCTCCTCCCGAATCTGATGAGCGTCGTCATTTCTAGAAAGCCGGTGGTCGTTTCCAGAGAGCCGCCGGTTCCTCTAAAAAACTCTTTCAACCATGTTTGTTGTTTTTCACCCGAAATTCGAAAATCCATTCTGGTGAAAGCAAATTTTGGAAATGTCATTCACCCTAGCCTCGGCGACTTTATACATTTCATTCATCTCCCAGCTAAATTTTACGACTTTTCCTTCCAAACCTGCCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGATCATCTATTTTCATTGTT</pcr_primer_p1>
		<pcr_primer_p2>GAAGAACATTCTGGAACCTATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGAGATCATCTATTTTCATTGTTGACTTTGACTGCAAAAATGACTGGTTCTGTGTAAAAAATCTGGAAGATTGGTCAATGCGTGGGAGGCTTCGCTCAGTTACCCGTTCGCGCATGATCATAAAATAAGTAGCCCAAGGAAGGAAGCTATAAAAGAAGAGAAGACGAAATGATAGGTGAAATGATGAATGGTCCCTTCCTCTTGCATAGGAAATGATTTTTCAGACTCCATAGGTTCCAGAATGTTCTTC</canonical_amplicon>
		<polymorphic_amplicon>CGAGATCATCTATTTTCATTGTTGACTTTGACTGCAAAAATGACTGGTTCTGTGTAAAAAATCTGGAAGATTGGTCAATGCGTGGGAGGCTTCGCTCAGTTACCCGTTCGCGCATGATCATAAAMTAAGTAGCCCAAGGAAGGAAGCTATAAAAGAAGAGAAGACGAAATGATAGGTGAAATGATGAATGGTCCCTTCCTCTTGCATAGGAAATGATTTTTCAGACTCCATAGGTTCCAGAATGTTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2569</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1006649</contig_pos>
        <strand>+</strand>
        <context>TATGAGAAAC[A/C]AATTGTGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATCGAACAAACGGAGAAAAGAGAAAAATGTCGCAGAGTTATGAGAAAC</left_flank>
        <right_flank>AATTGTGAGAAAGACTCTGTGACAAACTTGTCTGTTGGGACCAAACGTGT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACCTTATTCGAAGGCTCATGCTTTTTTAACCAGGAAAACAAAAATCACCTAATTGTCATAGATCGAGTACGGAAGATAGGCCATGTTTAGAAAAATTAAAAAATTTTTTCCGGGTTCCCTTTGGTTCACTAAATATCTTTTATAACCTGGATTGGATTTTGTTCCGGGTTTTGACTTCAACGGCATTTTTTCGGGATAACATAAACTTTGTAAAAAAGAAAATAAAAAACAAGAGATCTTCTCTAAGATTTCTTAGAACATCTTATTAACCAGTATAAATTTCTCGATGCACTCAAAAACCACAATTGTCAAAACACCAATTAAATGGGAATGGAGATGTGCCTGGAGCAGTGAGAAGTGCACACGGAAGTTAGGAATATGGACGCCTACTAGTAGAAGAATCACCCACCGGGTAATTTGATTATCATAGTCTCATGGTCGGCAAAAAAATCGAACAAACGGAGAAAAGAGAAAAATGTCGCAGAGTTATGAGAAACAAATTGTGAGAAAGACTCTGTGACAAACTTGTCTGTTGGGACCAAACGTGTTCGAAATTTGAATCAAAAAGAAAAAGAAGAAAAAACGAAACGAAAGACGAGTCGAGATTTTTTCAAACAGATTAAGGTCAAATGCGTTGTGATAGAATAGAAAACAACGAACACATAGGCGAAAAATTGTTATTTCTGAAATTCAAACTGCCGTTCGCTTTTCATCGCCATAGGTTCCACGTGTAAAAAGCCAATCTAAAAAAACTAACGGTCCTCACATTCACACGCTGTTTGAAAAATATGAAGTGACCGAAGTAGGTGATAAACCGGTCCCTGGAGAAAAATCAGGAGCCTCTCCCTCAAATTTTTCGTTGAAAGAGACGACACATTTTCGGACATGTCTTGCAGAGCCCAGAATCGCAACATTTTGCTGTTTTCCCATTTTTCTTTTTTTCCTGGTGAGAAATGGATTGGTGTCTCTTAACTGTTCCGAGGGAATTGAAACTTTGA</canonical>
            <polymorphic>TGACCTTATTCGAAGGCTCATGCTTTTTTAACCAGGAAAACAAAAATCACCTAATTGTCATAGATCGAGTACGGAAGATAGGCCATGTTTAGAAAAATTAAAAAATTTTTTCCGGGTTCCCTTTGGTTCACTAAATATCTTTTATAACCTGGATTGGATTTTGTTCCGGGTTTTGACTTCAACGGCATTTTTTCGGGATAACATAAACTTTGTAAAAAAGAAAATAAAAAACAAGAGATCTTCTCTAAGATTTCTTAGAACATCTTATTAACCAGTATAAATTTCTCGATGCACTCAAAAACCACAATTGTCAAAACACCAATTAAATGGGAATGGAGATGTGCCTGGAGCAGTGAGAAGTGCACACGGAAGTTAGGAATATGGACGCCTACTAGTAGAAGAATCACCCACCGGGTAATTTGATTATCATAGTCTCATGGTCGGCAAAAAAATCGAACAAACGGAGAAAAGAGAAAAATGTCGCAGAGTTATGAGAAACMAATTGTGAGAAAGACTCTGTGACAAACTTGTCTGTTGGGACCAAACGTGTTCGAAATTTGAATCAAAAAGAAAAAGAAGAAAAAACGAAACGAAAGACGAGTCGAGATTTTTTCAAACAGATTAAGGTCAAATGCGTTGTGATAGAATAGAAAACAACGAACACATAGGCGAAAAATTGTTATTTCTGAAATTCAAACTGCCGTTCGCTTTTCATCGCCATAGGTTCCACGTGTAAAAAGCCAATCTAAAAAAACTAACGGTCCTCACATTCACACGCTGTTTGAAAAATATGAAGTGACCGAAGTAGGTGATAAACCGGTCCCTGGAGAAAAATCAGGAGCCTCTCCCTCAAATTTTTCGTTGAAAGAGACGACACATTTTCGGACATGTCTTGCAGAGCCCAGAATCGCAACATTTTGCTGTTTTCCCATTTTTCTTTTTTTCCTGGTGAGAAATGGATTGGTGTCTCTTAACTGTTCCGAGGGAATTGAAACTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGATTATCATAGTCTCATGGTC</pcr_primer_p1>
		<pcr_primer_p2>CCTATGTGTTCGTTGTTTTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTGATTATCATAGTCTCATGGTCGGCAAAAAAATCGAACAAACGGAGAAAAGAGAAAAATGTCGCAGAGTTATGAGAAACAAATTGTGAGAAAGACTCTGTGACAAACTTGTCTGTTGGGACCAAACGTGTTCGAAATTTGAATCAAAAAGAAAAAGAAGAAAAAACGAAACGAAAGACGAGTCGAGATTTTTTCAAACAGATTAAGGTCAAATGCGTTGTGATAGAATAGAAAACAACGAACACATAGG</canonical_amplicon>
		<polymorphic_amplicon>TTTGATTATCATAGTCTCATGGTCGGCAAAAAAATCGAACAAACGGAGAAAAGAGAAAAATGTCGCAGAGTTATGAGAAACMAATTGTGAGAAAGACTCTGTGACAAACTTGTCTGTTGGGACCAAACGTGTTCGAAATTTGAATCAAAAAGAAAAAGAAGAAAAAACGAAACGAAAGACGAGTCGAGATTTTTTCAAACAGATTAAGGTCAAATGCGTTGTGATAGAATAGAAAACAACGAACACATAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2570</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1010670</contig_pos>
        <strand>+</strand>
        <context>GAGTTTTGAC[A/G]AACTTGTGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATGCTAAATAAGACAAAATGGGATTTCACGCAGTCCGTAGAGTTTTGAC</left_flank>
        <right_flank>AACTTGTGACCTAAGAAAATTCCGGAGGGGACCAGCGGAAATGAGTGGCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTGTTTTTCAGGAGATGTGATATTAGATCAATGAGGCACAAATACGAATTCATCCGATATTCCAGTGACCCATCTCAACAACTTATGGAGGACTTGTTCAAAATTGCCCGACGTCAAGGGGTTAGTTTCTTTAAAAGCAGCTACTCATTAAAAGCAAAATGGATTGTTTTGGAACATAAACAATCATGAAGCCACTTTTCTCTCACTAGAGTGAAACTAAGTAAAAATAACGGAAGTCTGAAAAAATAGAAATGTAGTGTGAACGGTGGGACCTATTTTTCACAAACGTTTTGCTCCCATCTGTCACAAATCTATTAGGAATTATTTGATTTTTCAGGTACCTGAAAACGAATTAGAGTTCATTGAAGATGAGCTCACCAAGAATCGAAAAACAACACATACAACTGCCTACTCGCCAGCACGAGAGTTCTATCAAAAAAGGTATTTTATGCTAAATAAGACAAAATGGGATTTCACGCAGTCCGTAGAGTTTTGACAAACTTGTGACCTAAGAAAATTCCGGAGGGGACCAGCGGAAATGAGTGGCATCTTAGAAATCACCACATTATTCTCCGCGACACGCCCACTTTTCTCGACTCTTTTTAGTGGGGGTCCAAATAGAGTGCGGTAATGGGTGATGGTGATGCACATTGGGGTGGTCTTGACCCCGCCGTCTTTTTGTGAAATTCTAGAATGTAAAACAACGAAAAAGGGCGCTTCAATTTGTTTTTGCAGATTGCGAGAAAATCCACTGTTAATGGAATATGTTGTAAGAATGTTCTACCACGACTTTGTCATCCTCAATTACCCATTTCCCGAGGGCTTCTAGAAGTATAAAAAATTTGACAACACGTTCCTGAAGTTATCAAAAGTGTCATAATTCATATCTTGTATCATTTGATCTTCAATTATCAAACTATGAACTGAATATAATACAACTTTTTTTATTGGTTTCCCATTGTGTTTTACGACATCATAGAGATTACAGACTTAACACT</canonical>
            <polymorphic>CATTGTTTTTCAGGAGATGTGATATTAGATCAATGAGGCACAAATACGAATTCATCCGATATTCCAGTGACCCATCTCAACAACTTATGGAGGACTTGTTCAAAATTGCCCGACGTCAAGGGGTTAGTTTCTTTAAAAGCAGCTACTCATTAAAAGCAAAATGGATTGTTTTGGAACATAAACAATCATGAAGCCACTTTTCTCTCACTAGAGTGAAACTAAGTAAAAATAACGGAAGTCTGAAAAAATAGAAATGTAGTGTGAACGGTGGGACCTATTTTTCACAAACGTTTTGCTCCCATCTGTCACAAATCTATTAGGAATTATTTGATTTTTCAGGTACCTGAAAACGAATTAGAGTTCATTGAAGATGAGCTCACCAAGAATCGAAAAACAACACATACAACTGCCTACTCGCCAGCACGAGAGTTCTATCAAAAAAGGTATTTTATGCTAAATAAGACAAAATGGGATTTCACGCAGTCCGTAGAGTTTTGACRAACTTGTGACCTAAGAAAATTCCGGAGGGGACCAGCGGAAATGAGTGGCATCTTAGAAATCACCACATTATTCTCCGCGACACGCCCACTTTTCTCGACTCTTTTTAGTGGGGGTCCAAATAGAGTGCGGTAATGGGTGATGGTGATGCACATTGGGGTGGTCTTGACCCCGCCGTCTTTTTGTGAAATTCTAGAATGTAAAACAACGAAAAAGGGCGCTTCAATTTGTTTTTGCAGATTGCGAGAAAATCCACTGTTAATGGAATATGTTGTAAGAATGTTCTACCACGACTTTGTCATCCTCAATTACCCATTTCCCGAGGGCTTCTAGAAGTATAAAAAATTTGACAACACGTTCCTGAAGTTATCAAAAGTGTCATAATTCATATCTTGTATCATTTGATCTTCAATTATCAAACTATGAACTGAATATAATACAACTTTTTTTATTGGTTTCCCATTGTGTTTTACGACATCATAGAGATTACAGACTTAACACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAATTATTTGATTTTTCAGGT</pcr_primer_p1>
		<pcr_primer_p2>GATTTCTAAGATGCCACTCATT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AGGAATTATTTGATTTTTCAGGTACCTGAAAACGAATTAGAGTTCATTGAAGATGAGCTCACCAAGAATCGAAAAACAACACATACAACTGCCTACTCGCCAGCACGAGAGTTCTATCAAAAAAGGTATTTTATGCTAAATAAGACAAAATGGGATTTCACGCAGTCCGTAGAGTTTTGACAAACTTGTGACCTAAGAAAATTCCGGAGGGGACCAGCGGAAATGAGTGGCATCTTAGAAATC</canonical_amplicon>
		<polymorphic_amplicon>AGGAATTATTTGATTTTTCAGGTACCTGAAAACGAATTAGAGTTCATTGAAGATGAGCTCACCAAGAATCGAAAAACAACACATACAACTGCCTACTCGCCAGCACGAGAGTTCTATCAAAAAAGGTATTTTATGCTAAATAAGACAAAATGGGATTTCACGCAGTCCGTAGAGTTTTGACRAACTTGTGACCTAAGAAAATTCCGGAGGGGACCAGCGGAAATGAGTGGCATCTTAGAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2571</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1011962</contig_pos>
        <strand>+</strand>
        <context>TAGATAAAAT[C/G]AGTAGTATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTTTTTTTCGGTATTCTATATCTTTTAGCATGACATTGATAGATAAAAT</left_flank>
        <right_flank>AGTAGTATTTTGACAGTTACTGTAAATGTTACAGACTAAATTTACATGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGTGGAAAAATTCCATATTCTATGACTCCGAATAATTCCGAGTTATCCGAGTAACAATAGTTTTTCGAAATAAATGTTTTTGTTAATGAAGTTTCGAATTTTTAAGGTACAATACCGACAAGAGTTTCTAGTTTTATTTATTTTTTACTTATTTTTGAAATTATCAACTCTTGAGAATGTATTACAGAATCGTTCGATTGACCAGAACATTCTAGAATCCCTGTGATAGAGGGCTCCTTAACTTCTGACTTTGAGACAAATTTGCTTGGTTTCTGACAAAAATATTTAAAAAATTGTCAACTGATAAATTTTTTATCATAATATCATTAGTGGTTTGTCAGTTGGATAATTTTTTAAATGTGTTGCATAATGCCTCTTGATTTACTCGAACTTGAGAGTGTGAGAGCCCTTTTATTACAGGTTTTACGGTATATTAAATATGAAAGGATTTTTTTTCGGTATTCTATATCTTTTAGCATGACATTGATAGATAAAATCAGTAGTATTTTGACAGTTACTGTAAATGTTACAGACTAAATTTACATGGACCAAAAACAAGCTAACATGGAATGACTCCCAAGTGTTACCCTTGAAAAAAATTGAGACCTAGATGATTGGAAAGAGCGTAAAAGATTTTAAAAAAATGAATAGACAATTTATTGTTCTTTTGAAAAAAAAAAATTTTGATTTTTTTCCCATTGATTGGATTATTGATTTTTTGAAAAAACCGAAGAATTTTTCAATATCTCAAAAATCCCAAGTTAACTTTTTTTCTTATTATGACCATTGAATTCAGCACGTTTGATTTACTATAGAAACATATCAACACCCCGGGGGAAATCATGCTCACACAAGTTATGCCAAAAAAAGTCGATTTTTGGCACTTGGCTGCTTTGAACTCGTTGTCCTATAGCCATTTTTTGGTACGTTTTGGGCCATAACTCCCCAAAAAAAATTTTATCAACAATTCCTTTTGGATTCGAAGATAACTTTTTACG</canonical>
            <polymorphic>TAAGTGGAAAAATTCCATATTCTATGACTCCGAATAATTCCGAGTTATCCGAGTAACAATAGTTTTTCGAAATAAATGTTTTTGTTAATGAAGTTTCGAATTTTTAAGGTACAATACCGACAAGAGTTTCTAGTTTTATTTATTTTTTACTTATTTTTGAAATTATCAACTCTTGAGAATGTATTACAGAATCGTTCGATTGACCAGAACATTCTAGAATCCCTGTGATAGAGGGCTCCTTAACTTCTGACTTTGAGACAAATTTGCTTGGTTTCTGACAAAAATATTTAAAAAATTGTCAACTGATAAATTTTTTATCATAATATCATTAGTGGTTTGTCAGTTGGATAATTTTTTAAATGTGTTGCATAATGCCTCTTGATTTACTCGAACTTGAGAGTGTGAGAGCCCTTTTATTACAGGTTTTACGGTATATTAAATATGAAAGGATTTTTTTTCGGTATTCTATATCTTTTAGCATGACATTGATAGATAAAATSAGTAGTATTTTGACAGTTACTGTAAATGTTACAGACTAAATTTACATGGACCAAAAACAAGCTAACATGGAATGACTCCCAAGTGTTACCCTTGAAAAAAATTGAGACCTAGATGATTGGAAAGAGCGTAAAAGATTTTAAAAAAATGAATAGACAATTTATTGTTCTTTTGAAAAAAAAAAATTTTGATTTTTTTCCCATTGATTGGATTATTGATTTTTTGAAAAAACCGAAGAATTTTTCAATATCTCAAAAATCCCAAGTTAACTTTTTTTCTTATTATGACCATTGAATTCAGCACGTTTGATTTACTATAGAAACATATCAACACCCCGGGGGAAATCATGCTCACACAAGTTATGCCAAAAAAAGTCGATTTTTGGCACTTGGCTGCTTTGAACTCGTTGTCCTATAGCCATTTTTTGGTACGTTTTGGGCCATAACTCCCCAAAAAAAATTTTATCAACAATTCCTTTTGGATTCGAAGATAACTTTTTACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCGATTGACCAGAACATT</pcr_primer_p1>
		<pcr_primer_p2>TTTGGTCCATGTAAATTTAGTCT</pcr_primer_p2>
		<pcr_amplicon_size>362</pcr_amplicon_size>
		<canonical_amplicon>GTTCGATTGACCAGAACATTCTAGAATCCCTGTGATAGAGGGCTCCTTAACTTCTGACTTTGAGACAAATTTGCTTGGTTTCTGACAAAAATATTTAAAAAATTGTCAACTGATAAATTTTTTATCATAATATCATTAGTGGTTTGTCAGTTGGATAATTTTTTAAATGTGTTGCATAATGCCTCTTGATTTACTCGAACTTGAGAGTGTGAGAGCCCTTTTATTACAGGTTTTACGGTATATTAAATATGAAAGGATTTTTTTTCGGTATTCTATATCTTTTAGCATGACATTGATAGATAAAATCAGTAGTATTTTGACAGTTACTGTAAATGTTACAGACTAAATTTACATGGACCAAA</canonical_amplicon>
		<polymorphic_amplicon>GTTCGATTGACCAGAACATTCTAGAATCCCTGTGATAGAGGGCTCCTTAACTTCTGACTTTGAGACAAATTTGCTTGGTTTCTGACAAAAATATTTAAAAAATTGTCAACTGATAAATTTTTTATCATAATATCATTAGTGGTTTGTCAGTTGGATAATTTTTTAAATGTGTTGCATAATGCCTCTTGATTTACTCGAACTTGAGAGTGTGAGAGCCCTTTTATTACAGGTTTTACGGTATATTAAATATGAAAGGATTTTTTTTCGGTATTCTATATCTTTTAGCATGACATTGATAGATAAAATSAGTAGTATTTTGACAGTTACTGTAAATGTTACAGACTAAATTTACATGGACCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2572</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1095072</contig_pos>
        <strand>+</strand>
        <context>TTTAATAGCT[C/T]TGTTCTGCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGCATTTTTATGTAATTTTTTTGGTTTCGCCTGGCAGCCTTTAATAGCT</left_flank>
        <right_flank>TGTTCTGCTGACTTCTAGTGTTGACTGCCATCCGATGCTGGTAGTCTGGA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCATCGGTAAATAATGTTGTGATTGCCGAAATAGAAGTTTGGAAAGCATCTTGTAGTTCTTCCATCATATGTTTTCCTTCACGCCCAAAATTGATTATTCCCAAATTGCTAGCATCTAGAGAGGTTGTTTCACACCAAGTTCGAAGTATCAGTAGACCAGTGTCTGAAAAATTTCTCTCATTTTCAGCTTACTAATATCAATCAGAATCGAACTCACAATTAGAGCAACTTCTCGAATTATCGCGGTCACCCGTCTGCAAAAACCATCTTTCTAGTGTCCATCGAGCAGTGCAGAAGAAAACAATTAAATTCATATTGTTCATCAGCCATCAATTCGCATAACACTGACATTTTCCTCAATTACAGTTCCAGCTACGTCGCAACCTTCTTAAAATGTTGTGACGTCTGAGGATCTAGTTTGCCCAATCAACGCAGCACAAATGTCATTAGCATTTTTATGTAATTTTTTTGGTTTCGCCTGGCAGCCTTTAATAGCTTTGTTCTGCTGACTTCTAGTGTTGACTGCCATCCGATGCTGGTAGTCTGGAAATCCAGTATGCTAAGGCCATCTCGTCTGTAAGTTTTTCGACAACGCCTTACACGCGAACCTGTAAATTGCTTGATGGGATTTTCTGATAGAAAATTTTTCGTTTTACCTGAGATTCACATTTCGCCAGTACTTTTCGCCAGTAGTTCTTTTTTCTATTTTATAACTGGTTGTCATTTTGATTGAATAACTTGAAGGTCTTTTTGCCAGGCAAAACGACATCGATCAATCTTTGGTAAAATTGAAAAATACACCCAATCGTCGCTCATCAGCTCGTTGCACGCAATTTGAAAATTGAGGTTCGGGGGTCAGATAAATTACGTCGATGTGTTGTCAATGTCTCTTATCTGGTCTCACTAGTCCTTTTGGTAAGACTGCTTTTAATTTTGAGTAGTGGTGAAGAAAAGCAAAAATCTAATTGATTTCAGCTGGTTTCCCATTTCCCGTTGTT</canonical>
            <polymorphic>GTCCATCGGTAAATAATGTTGTGATTGCCGAAATAGAAGTTTGGAAAGCATCTTGTAGTTCTTCCATCATATGTTTTCCTTCACGCCCAAAATTGATTATTCCCAAATTGCTAGCATCTAGAGAGGTTGTTTCACACCAAGTTCGAAGTATCAGTAGACCAGTGTCTGAAAAATTTCTCTCATTTTCAGCTTACTAATATCAATCAGAATCGAACTCACAATTAGAGCAACTTCTCGAATTATCGCGGTCACCCGTCTGCAAAAACCATCTTTCTAGTGTCCATCGAGCAGTGCAGAAGAAAACAATTAAATTCATATTGTTCATCAGCCATCAATTCGCATAACACTGACATTTTCCTCAATTACAGTTCCAGCTACGTCGCAACCTTCTTAAAATGTTGTGACGTCTGAGGATCTAGTTTGCCCAATCAACGCAGCACAAATGTCATTAGCATTTTTATGTAATTTTTTTGGTTTCGCCTGGCAGCCTTTAATAGCTYTGTTCTGCTGACTTCTAGTGTTGACTGCCATCCGATGCTGGTAGTCTGGAAATCCAGTATGCTAAGGCCATCTCGTCTGTAAGTTTTTCGACAACGCCTTACACGCGAACCTGTAAATTGCTTGATGGGATTTTCTGATAGAAAATTTTTCGTTTTACCTGAGATTCACATTTCGCCAGTACTTTTCGCCAGTAGTTCTTTTTTCTATTTTATAACTGGTTGTCATTTTGATTGAATAACTTGAAGGTCTTTTTGCCAGGCAAAACGACATCGATCAATCTTTGGTAAAATTGAAAAATACACCCAATCGTCGCTCATCAGCTCGTTGCACGCAATTTGAAAATTGAGGTTCGGGGGTCAGATAAATTACGTCGATGTGTTGTCAATGTCTCTTATCTGGTCTCACTAGTCCTTTTGGTAAGACTGCTTTTAATTTTGAGTAGTGGTGAAGAAAAGCAAAAATCTAATTGATTTCAGCTGGTTTCCCATTTCCCGTTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGACATTTTCCTCAATTACAGT</pcr_primer_p1>
		<pcr_primer_p2>CGTTGTCGAAAAACTTACAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGACATTTTCCTCAATTACAGTTCCAGCTACGTCGCAACCTTCTTAAAATGTTGTGACGTCTGAGGATCTAGTTTGCCCAATCAACGCAGCACAAATGTCATTAGCATTTTTATGTAATTTTTTTGGTTTCGCCTGGCAGCCTTTAATAGCTTTGTTCTGCTGACTTCTAGTGTTGACTGCCATCCGATGCTGGTAGTCTGGAAATCCAGTATGCTAAGGCCATCTCGTCTGTAAGTTTTTCGACAACG</canonical_amplicon>
		<polymorphic_amplicon>CTGACATTTTCCTCAATTACAGTTCCAGCTACGTCGCAACCTTCTTAAAATGTTGTGACGTCTGAGGATCTAGTTTGCCCAATCAACGCAGCACAAATGTCATTAGCATTTTTATGTAATTTTTTTGGTTTCGCCTGGCAGCCTTTAATAGCTYTGTTCTGCTGACTTCTAGTGTTGACTGCCATCCGATGCTGGTAGTCTGGAAATCCAGTATGCTAAGGCCATCTCGTCTGTAAGTTTTTCGACAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2573</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1095144</contig_pos>
        <strand>+</strand>
        <context>CTAAGGCCAT[C/G]TCGTCTGTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGACTGCCATCCGATGCTGGTAGTCTGGAAATCCAGTATGCTAAGGCCAT</left_flank>
        <right_flank>TCGTCTGTAAGTTTTTCGACAACGCCTTACACGCGAACCTGTAAATTGCT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTCCTTCACGCCCAAAATTGATTATTCCCAAATTGCTAGCATCTAGAGAGGTTGTTTCACACCAAGTTCGAAGTATCAGTAGACCAGTGTCTGAAAAATTTCTCTCATTTTCAGCTTACTAATATCAATCAGAATCGAACTCACAATTAGAGCAACTTCTCGAATTATCGCGGTCACCCGTCTGCAAAAACCATCTTTCTAGTGTCCATCGAGCAGTGCAGAAGAAAACAATTAAATTCATATTGTTCATCAGCCATCAATTCGCATAACACTGACATTTTCCTCAATTACAGTTCCAGCTACGTCGCAACCTTCTTAAAATGTTGTGACGTCTGAGGATCTAGTTTGCCCAATCAACGCAGCACAAATGTCATTAGCATTTTTATGTAATTTTTTTGGTTTCGCCTGGCAGCCTTTAATAGCTTTGTTCTGCTGACTTCTAGTGTTGACTGCCATCCGATGCTGGTAGTCTGGAAATCCAGTATGCTAAGGCCATCTCGTCTGTAAGTTTTTCGACAACGCCTTACACGCGAACCTGTAAATTGCTTGATGGGATTTTCTGATAGAAAATTTTTCGTTTTACCTGAGATTCACATTTCGCCAGTACTTTTCGCCAGTAGTTCTTTTTTCTATTTTATAACTGGTTGTCATTTTGATTGAATAACTTGAAGGTCTTTTTGCCAGGCAAAACGACATCGATCAATCTTTGGTAAAATTGAAAAATACACCCAATCGTCGCTCATCAGCTCGTTGCACGCAATTTGAAAATTGAGGTTCGGGGGTCAGATAAATTACGTCGATGTGTTGTCAATGTCTCTTATCTGGTCTCACTAGTCCTTTTGGTAAGACTGCTTTTAATTTTGAGTAGTGGTGAAGAAAAGCAAAAATCTAATTGATTTCAGCTGGTTTCCCATTTCCCGTTGTTTCGACATGCTCTCGAATTTTCGGAGCAACCCTTTTCCGTTCTGGTGGTGGAATCCTAGCTTCCATCTTCCGA</canonical>
            <polymorphic>GTTTTCCTTCACGCCCAAAATTGATTATTCCCAAATTGCTAGCATCTAGAGAGGTTGTTTCACACCAAGTTCGAAGTATCAGTAGACCAGTGTCTGAAAAATTTCTCTCATTTTCAGCTTACTAATATCAATCAGAATCGAACTCACAATTAGAGCAACTTCTCGAATTATCGCGGTCACCCGTCTGCAAAAACCATCTTTCTAGTGTCCATCGAGCAGTGCAGAAGAAAACAATTAAATTCATATTGTTCATCAGCCATCAATTCGCATAACACTGACATTTTCCTCAATTACAGTTCCAGCTACGTCGCAACCTTCTTAAAATGTTGTGACGTCTGAGGATCTAGTTTGCCCAATCAACGCAGCACAAATGTCATTAGCATTTTTATGTAATTTTTTTGGTTTCGCCTGGCAGCCTTTAATAGCTTTGTTCTGCTGACTTCTAGTGTTGACTGCCATCCGATGCTGGTAGTCTGGAAATCCAGTATGCTAAGGCCATSTCGTCTGTAAGTTTTTCGACAACGCCTTACACGCGAACCTGTAAATTGCTTGATGGGATTTTCTGATAGAAAATTTTTCGTTTTACCTGAGATTCACATTTCGCCAGTACTTTTCGCCAGTAGTTCTTTTTTCTATTTTATAACTGGTTGTCATTTTGATTGAATAACTTGAAGGTCTTTTTGCCAGGCAAAACGACATCGATCAATCTTTGGTAAAATTGAAAAATACACCCAATCGTCGCTCATCAGCTCGTTGCACGCAATTTGAAAATTGAGGTTCGGGGGTCAGATAAATTACGTCGATGTGTTGTCAATGTCTCTTATCTGGTCTCACTAGTCCTTTTGGTAAGACTGCTTTTAATTTTGAGTAGTGGTGAAGAAAAGCAAAAATCTAATTGATTTCAGCTGGTTTCCCATTTCCCGTTGTTTCGACATGCTCTCGAATTTTCGGAGCAACCCTTTTCCGTTCTGGTGGTGGAATCCTAGCTTCCATCTTCCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGCTGACTTCTAGTGTTGACT</pcr_primer_p1>
		<pcr_primer_p2>GACCTTCAAGTTATTCAATCAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCTGCTGACTTCTAGTGTTGACTGCCATCCGATGCTGGTAGTCTGGAAATCCAGTATGCTAAGGCCATCTCGTCTGTAAGTTTTTCGACAACGCCTTACACGCGAACCTGTAAATTGCTTGATGGGATTTTCTGATAGAAAATTTTTCGTTTTACCTGAGATTCACATTTCGCCAGTACTTTTCGCCAGTAGTTCTTTTTTCTATTTTATAACTGGTTGTCATTTTGATTGAATAACTTGAAGGTC</canonical_amplicon>
		<polymorphic_amplicon>TCTGCTGACTTCTAGTGTTGACTGCCATCCGATGCTGGTAGTCTGGAAATCCAGTATGCTAAGGCCATSTCGTCTGTAAGTTTTTCGACAACGCCTTACACGCGAACCTGTAAATTGCTTGATGGGATTTTCTGATAGAAAATTTTTCGTTTTACCTGAGATTCACATTTCGCCAGTACTTTTCGCCAGTAGTTCTTTTTTCTATTTTATAACTGGTTGTCATTTTGATTGAATAACTTGAAGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2574</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1095329</contig_pos>
        <strand>+</strand>
        <context>GTCTTTTTGC[C/G]AGGCAAAACG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTTTATAACTGGTTGTCATTTTGATTGAATAACTTGAAGGTCTTTTTGC</left_flank>
        <right_flank>AGGCAAAACGACATCGATCAATCTTTGGTAAAATTGAAAAATACACCCAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCAAAAACCATCTTTCTAGTGTCCATCGAGCAGTGCAGAAGAAAACAATTAAATTCATATTGTTCATCAGCCATCAATTCGCATAACACTGACATTTTCCTCAATTACAGTTCCAGCTACGTCGCAACCTTCTTAAAATGTTGTGACGTCTGAGGATCTAGTTTGCCCAATCAACGCAGCACAAATGTCATTAGCATTTTTATGTAATTTTTTTGGTTTCGCCTGGCAGCCTTTAATAGCTTTGTTCTGCTGACTTCTAGTGTTGACTGCCATCCGATGCTGGTAGTCTGGAAATCCAGTATGCTAAGGCCATCTCGTCTGTAAGTTTTTCGACAACGCCTTACACGCGAACCTGTAAATTGCTTGATGGGATTTTCTGATAGAAAATTTTTCGTTTTACCTGAGATTCACATTTCGCCAGTACTTTTCGCCAGTAGTTCTTTTTTCTATTTTATAACTGGTTGTCATTTTGATTGAATAACTTGAAGGTCTTTTTGCCAGGCAAAACGACATCGATCAATCTTTGGTAAAATTGAAAAATACACCCAATCGTCGCTCATCAGCTCGTTGCACGCAATTTGAAAATTGAGGTTCGGGGGTCAGATAAATTACGTCGATGTGTTGTCAATGTCTCTTATCTGGTCTCACTAGTCCTTTTGGTAAGACTGCTTTTAATTTTGAGTAGTGGTGAAGAAAAGCAAAAATCTAATTGATTTCAGCTGGTTTCCCATTTCCCGTTGTTTCGACATGCTCTCGAATTTTCGGAGCAACCCTTTTCCGTTCTGGTGGTGGAATCCTAGCTTCCATCTTCCGATCCGCCCAATTTAGTTAAAATGGAAAGCATCATCAGAGGGCGAGTTAGAAAACTCCCATACAACCCTCAAATATCGAGAAACACACTCTCGGCATTCTCGTCAAGGAAGTTCATTGCTTTATTGAAGTTCCATCGGTTGTTGCAGATCCATCGGCTGACGAAACCTGGAAAAATCAATAATTTCT</canonical>
            <polymorphic>TGCAAAAACCATCTTTCTAGTGTCCATCGAGCAGTGCAGAAGAAAACAATTAAATTCATATTGTTCATCAGCCATCAATTCGCATAACACTGACATTTTCCTCAATTACAGTTCCAGCTACGTCGCAACCTTCTTAAAATGTTGTGACGTCTGAGGATCTAGTTTGCCCAATCAACGCAGCACAAATGTCATTAGCATTTTTATGTAATTTTTTTGGTTTCGCCTGGCAGCCTTTAATAGCTTTGTTCTGCTGACTTCTAGTGTTGACTGCCATCCGATGCTGGTAGTCTGGAAATCCAGTATGCTAAGGCCATCTCGTCTGTAAGTTTTTCGACAACGCCTTACACGCGAACCTGTAAATTGCTTGATGGGATTTTCTGATAGAAAATTTTTCGTTTTACCTGAGATTCACATTTCGCCAGTACTTTTCGCCAGTAGTTCTTTTTTCTATTTTATAACTGGTTGTCATTTTGATTGAATAACTTGAAGGTCTTTTTGCSAGGCAAAACGACATCGATCAATCTTTGGTAAAATTGAAAAATACACCCAATCGTCGCTCATCAGCTCGTTGCACGCAATTTGAAAATTGAGGTTCGGGGGTCAGATAAATTACGTCGATGTGTTGTCAATGTCTCTTATCTGGTCTCACTAGTCCTTTTGGTAAGACTGCTTTTAATTTTGAGTAGTGGTGAAGAAAAGCAAAAATCTAATTGATTTCAGCTGGTTTCCCATTTCCCGTTGTTTCGACATGCTCTCGAATTTTCGGAGCAACCCTTTTCCGTTCTGGTGGTGGAATCCTAGCTTCCATCTTCCGATCCGCCCAATTTAGTTAAAATGGAAAGCATCATCAGAGGGCGAGTTAGAAAACTCCCATACAACCCTCAAATATCGAGAAACACACTCTCGGCATTCTCGTCAAGGAAGTTCATTGCTTTATTGAAGTTCCATCGGTTGTTGCAGATCCATCGGCTGACGAAACCTGGAAAAATCAATAATTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>480 276 224 20</canonical_bands>
                <polymorphic_bands>756 224 20</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>480 276 224 20</canonical_bands>
                <polymorphic_bands>756 224 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTACCTGAGATTCACATTTC</pcr_primer_p1>
		<pcr_primer_p2>ACCAGATAAGAGACATTGACAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTTACCTGAGATTCACATTTCGCCAGTACTTTTCGCCAGTAGTTCTTTTTTCTATTTTATAACTGGTTGTCATTTTGATTGAATAACTTGAAGGTCTTTTTGCCAGGCAAAACGACATCGATCAATCTTTGGTAAAATTGAAAAATACACCCAATCGTCGCTCATCAGCTCGTTGCACGCAATTTGAAAATTGAGGTTCGGGGGTCAGATAAATTACGTCGATGTGTTGTCAATGTCTCTTATCTGGT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTACCTGAGATTCACATTTCGCCAGTACTTTTCGCCAGTAGTTCTTTTTTCTATTTTATAACTGGTTGTCATTTTGATTGAATAACTTGAAGGTCTTTTTGCSAGGCAAAACGACATCGATCAATCTTTGGTAAAATTGAAAAATACACCCAATCGTCGCTCATCAGCTCGTTGCACGCAATTTGAAAATTGAGGTTCGGGGGTCAGATAAATTACGTCGATGTGTTGTCAATGTCTCTTATCTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2575</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1119088</contig_pos>
        <strand>+</strand>
        <context>AACTAAAATG[G/T]ACACCAGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACTGTCGAAGATTTTACAGAGCCATTACGGTAAAGTGTAAACTAAAATG</left_flank>
        <right_flank>ACACCAGATTTCTATCTGTGGGGTTTCCATATTATTGAAAAGTTATTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAAATAACTAAGAATGTTGTGCCCAAAACATAAAGTGCGTAATGACACTTTTGTTCAAAACTCCTTTTTTGCTGAGTATTCCTTGTTTTTTTTCCTATTTTTTCCTACAATTCCAGCGTTCTTATCCATAAGCTTTGTGTGTTCTCATGATGTCATTTTTTCTTACCACCGTGATTAAAAAAACCGAAAAGAGATTGAAAAAAATTTCAGTGCAGTTCTAAGCTTAAAGTGGAAAAAGTCGCCGAAAGCCAAGATCCATTTTTTCCAATTTCGGGTGAAAATACCCCATTTGTCGGCTCAACCCCCCTAACGACCTAATCAACGGCTCAGGGGGTAAAAGAATATTTGCGAACAAAAAAGAATGGAAGACATGGCGTCAGAAACGTCTGATCCTATTCAAATAATGATTGTGAGCACTCCAAACCTGCCTAAGACATCGATTTGCTTAACTGTCGAAGATTTTACAGAGCCATTACGGTAAAGTGTAAACTAAAATGTACACCAGATTTCTATCTGTGGGGTTTCCATATTATTGAAAAGTTATTTTTATTCACTAATACATAAAACGTTAACTAAAACATTTTTAAATATCTTTTGACGTGACATTTGAAATACCGTAGACACTATAACAGAAGGTCACCCTATACTTGCACTTTGAGATTAATTACCTCAAAAAAAGTGATCAGAAATGTGTCAACTAATAAAACGTTGATGATATTATGACAAACATTTCACCAGTTGATATATTTCCGTGTTTTCATTTAGAAAATGGTAATCGAAATAAAAGTTCAAATACACTGCAGCTTTCAATTAGAGTAAAGATAACATTTGCTTTAAAAACACACAAAACCAAAAATGAAAAATGTGTTCCTTGGTTTCTGTAACCTAAAAATACAATTAGGTCCAGAAATCGAATAGATTTACATCATCGCCAATTCTCCCAAGGTTCCGATGAATATTATATGTGATGAAACTTCATGAACAATATTTTTACCCAG</canonical>
            <polymorphic>TCGAAATAACTAAGAATGTTGTGCCCAAAACATAAAGTGCGTAATGACACTTTTGTTCAAAACTCCTTTTTTGCTGAGTATTCCTTGTTTTTTTTCCTATTTTTTCCTACAATTCCAGCGTTCTTATCCATAAGCTTTGTGTGTTCTCATGATGTCATTTTTTCTTACCACCGTGATTAAAAAAACCGAAAAGAGATTGAAAAAAATTTCAGTGCAGTTCTAAGCTTAAAGTGGAAAAAGTCGCCGAAAGCCAAGATCCATTTTTTCCAATTTCGGGTGAAAATACCCCATTTGTCGGCTCAACCCCCCTAACGACCTAATCAACGGCTCAGGGGGTAAAAGAATATTTGCGAACAAAAAAGAATGGAAGACATGGCGTCAGAAACGTCTGATCCTATTCAAATAATGATTGTGAGCACTCCAAACCTGCCTAAGACATCGATTTGCTTAACTGTCGAAGATTTTACAGAGCCATTACGGTAAAGTGTAAACTAAAATGKACACCAGATTTCTATCTGTGGGGTTTCCATATTATTGAAAAGTTATTTTTATTCACTAATACATAAAACGTTAACTAAAACATTTTTAAATATCTTTTGACGTGACATTTGAAATACCGTAGACACTATAACAGAAGGTCACCCTATACTTGCACTTTGAGATTAATTACCTCAAAAAAAGTGATCAGAAATGTGTCAACTAATAAAACGTTGATGATATTATGACAAACATTTCACCAGTTGATATATTTCCGTGTTTTCATTTAGAAAATGGTAATCGAAATAAAAGTTCAAATACACTGCAGCTTTCAATTAGAGTAAAGATAACATTTGCTTTAAAAACACACAAAACCAAAAATGAAAAATGTGTTCCTTGGTTTCTGTAACCTAAAAATACAATTAGGTCCAGAAATCGAATAGATTTACATCATCGCCAATTCTCCCAAGGTTCCGATGAATATTATATGTGATGAAACTTCATGAACAATATTTTTACCCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGTACA</site>
                <isoschizomers>
                    <enzyme>AauI</enzyme>
                    <enzyme>Bsp1407I</enzyme>
                    <enzyme>BsrGI</enzyme>
                    <enzyme>SspBI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>489 303 76 71 49 12</canonical_bands>
                <polymorphic_bands>489 303 83 76 49</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCAGAAACGTCTGATCCTATT</pcr_primer_p1>
		<pcr_primer_p2>TCAAATGTCACGTCAAAAGATA</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>GTCAGAAACGTCTGATCCTATTCAAATAATGATTGTGAGCACTCCAAACCTGCCTAAGACATCGATTTGCTTAACTGTCGAAGATTTTACAGAGCCATTACGGTAAAGTGTAAACTAAAATGTACACCAGATTTCTATCTGTGGGGTTTCCATATTATTGAAAAGTTATTTTTATTCACTAATACATAAAACGTTAACTAAAACATTTTTAAATATCTTTTGACGTGACATTTGA</canonical_amplicon>
		<polymorphic_amplicon>GTCAGAAACGTCTGATCCTATTCAAATAATGATTGTGAGCACTCCAAACCTGCCTAAGACATCGATTTGCTTAACTGTCGAAGATTTTACAGAGCCATTACGGTAAAGTGTAAACTAAAATGKACACCAGATTTCTATCTGTGGGGTTTCCATATTATTGAAAAGTTATTTTTATTCACTAATACATAAAACGTTAACTAAAACATTTTTAAATATCTTTTGACGTGACATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2576</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1119204</contig_pos>
        <strand></strand>
        <context>CATTTGAAAT[A/C]ccgtagacac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAACGTTAACTAAAACATTTTTAAATATCTTTTGACGTGACATTTGAAAT</left_flank>
        <right_flank>CCGTAGACACTATAACAGAAGGTCACCCTATACTTGCACTTTGAGATTAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCGTTCTTATCCATAAGCTTTGTGTGTTCTCATGATGTCATTTTTTCTTACCACCGTGATTAAAAAAACCGAAAAGAGATTGAAAAAAATTTCAGTGCAGTTCTAAGCTTAAAGTGGAAAAAGTCGCCGAAAGCCAAGATCCATTTTTTCCAATTTCGGGTGAAAATACCCCATTTGTCGGCTCAACCCCCCTAACGACCTAATCAACGGCTCAGGGGGTAAAAGAATATTTGCGAACAAAAAAGAATGGAAGACATGGCGTCAGAAACGTCTGATCCTATTCAAATAATGATTGTGAGCACTCCAAACCTGCCTAAGACATCGATTTGCTTAACTGTCGAAGATTTTACAGAGCCATTACGGTAAAGTGTAAACTAAAATGTACACCAGATTTCTATCTGTGGGGTTTCCATATTATTGAAAAGTTATTTTTATTCACTAATACATAAAACGTTAACTAAAACATTTTTAAATATCTTTTGACGTGACATTTGAAATACCGTAGACACTATAACAGAAGGTCACCCTATACTTGCACTTTGAGATTAATTACCTCAAAAAAAGTGATCAGAAATGTGTCAACTAATAAAACGTTGATGATATTATGACAAACATTTCACCAGTTGATATATTTCCGTGTTTTCATTTAGAAAATGGTAATCGAAATAAAAGTTCAAATACACTGCAGCTTTCAATTAGAGTAAAGATAACATTTGCTTTAAAAACACACAAAACCAAAAATGAAAAATGTGTTCCTTGGTTTCTGTAACCTAAAAATACAATTAGGTCCAGAAATCGAATAGATTTACATCATCGCCAATTCTCCCAAGGTTCCGATGAATATTATATGTGATGAAACTTCATGAACAATATTTTTACCCAGAACAAAACGATGATGCTGAGAAAACAAAATCATTGTTAATCTAAAATGAGAACAAATTTTAGCCGTCGCTCGCTACCAAAAGAGGAAAGCCCACGAAGCGGTCTCAAACCACATGA</canonical>
            <polymorphic>AGCGTTCTTATCCATAAGCTTTGTGTGTTCTCATGATGTCATTTTTTCTTACCACCGTGATTAAAAAAACCGAAAAGAGATTGAAAAAAATTTCAGTGCAGTTCTAAGCTTAAAGTGGAAAAAGTCGCCGAAAGCCAAGATCCATTTTTTCCAATTTCGGGTGAAAATACCCCATTTGTCGGCTCAACCCCCCTAACGACCTAATCAACGGCTCAGGGGGTAAAAGAATATTTGCGAACAAAAAAGAATGGAAGACATGGCGTCAGAAACGTCTGATCCTATTCAAATAATGATTGTGAGCACTCCAAACCTGCCTAAGACATCGATTTGCTTAACTGTCGAAGATTTTACAGAGCCATTACGGTAAAGTGTAAACTAAAATGTACACCAGATTTCTATCTGTGGGGTTTCCATATTATTGAAAAGTTATTTTTATTCACTAATACATAAAACGTTAACTAAAACATTTTTAAATATCTTTTGACGTGACATTTGAAATMCCGTAGACACTATAACAGAAGGTCACCCTATACTTGCACTTTGAGATTAATTACCTCAAAAAAAGTGATCAGAAATGTGTCAACTAATAAAACGTTGATGATATTATGACAAACATTTCACCAGTTGATATATTTCCGTGTTTTCATTTAGAAAATGGTAATCGAAATAAAAGTTCAAATACACTGCAGCTTTCAATTAGAGTAAAGATAACATTTGCTTTAAAAACACACAAAACCAAAAATGAAAAATGTGTTCCTTGGTTTCTGTAACCTAAAAATACAATTAGGTCCAGAAATCGAATAGATTTACATCATCGCCAATTCTCCCAAGGTTCCGATGAATATTATATGTGATGAAACTTCATGAACAATATTTTTACCCAGAACAAAACGATGATGCTGAGAAAACAAAATCATTGTTAATCTAAAATGAGAACAAATTTTAGCCGTCGCTCGCTACCAAAAGAGGAAAGCCCACGAAGCGGTCTCAAACCACATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>498 281 139 56 26</canonical_bands>
                <polymorphic_bands>637 281 56 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTGGGGTTTCCATATTATT</pcr_primer_p1>
		<pcr_primer_p2>AGCTGCAGTGTATTTGAACTTT</pcr_primer_p2>
		<pcr_amplicon_size>292</pcr_amplicon_size>
		<canonical_amplicon>CTGTGGGGTTTCCATATTATTGAAAAGTTATTTTTATTCACTAATACATAAAACGTTAACTAAAACATTTTTAAATATCTTTTGACGTGACATTTGAAATACCGTAGACACTATAACAGAAGGTCACCCTATACTTGCACTTTGAGATTAATTACCTCAAAAAAAGTGATCAGAAATGTGTCAACTAATAAAACGTTGATGATATTATGACAAACATTTCACCAGTTGATATATTTCCGTGTTTTCATTTAGAAAATGGTAATCGAAATAAAAGTTCAAATACACTGCAGCT</canonical_amplicon>
		<polymorphic_amplicon>CTGTGGGGTTTCCATATTATTGAAAAGTTATTTTTATTCACTAATACATAAAACGTTAACTAAAACATTTTTAAATATCTTTTGACGTGACATTTGAAATMCCGTAGACACTATAACAGAAGGTCACCCTATACTTGCACTTTGAGATTAATTACCTCAAAAAAAGTGATCAGAAATGTGTCAACTAATAAAACGTTGATGATATTATGACAAACATTTCACCAGTTGATATATTTCCGTGTTTTCATTTAGAAAATGGTAATCGAAATAAAAGTTCAAATACACTGCAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2577</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1120788</contig_pos>
        <strand>+</strand>
        <context>TCACATAATT[C/T]TTTCCAATGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCTGACCTCGCACATAATATTTTTCAGAGGGGATATGATCACATAATT</left_flank>
        <right_flank>TTTCCAATGTTTTGATAAGAGAACCTTGACATCTTGTAAACTCAAATTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGTAAGCGTACAAAGAGTCACTGTAAGATTTTCTAGTTTTTTTGAAAAATCGTTTTTGAAAATGCGGTTTTCTTAGTTAGTGGTCAGGTTTCTTGAAATAGCCTTCGTGTGAGATGATTTTTCTTTGTGCATCCAATTAACCAACTCAATCGCATTTTTGAGAATGGTTATCCTCCAATCTTAAACACAAAAGTGTTTTTTCTTATTTCAGAGGAAACTAAACGTGTTCCGAAGAGCCAGTCCATCCACACTGAGCACGCGTTCAACTCAACAATTCTTGGTTCCAAGTCCAGAAATGTCGTGCAAATCAAATCCAGAAACTGTCAAGGTGATCTGTGACTAATGACTTATTTTCAACTAGACAATTGCAGATGAAAAAGTCAATCTCGTTCAGTGAAACCACTCGCAATGCGTTCCGCCGATCGTTTCGTCAAAAAGTTCGTTGTTTTTCTGACCTCGCACATAATATTTTTCAGAGGGGATATGATCACATAATTTTTTCCAATGTTTTGATAAGAGAACCTTGACATCTTGTAAACTCAAATTTTGATGAAAATCTGAGGATAGGTTAAAAATTCACTGGACACTTCTGAACGTTTTAGAAGCCGGTCGCCCATTTCAGTCAAGTTATATCAGTTTGAGTACCTAAAATTGTGATGTTCAAGACCATTTTCTTACCTTCTAGCAGTGTGTGACTACCGATTGTCACTTACCGGTAACGGCTTTTTTGGTAATTTTACCGGTAATTTACCGGTAAAAATTTACCGAAATTTACCGGTAACCTACCGGTAAATTTGAAAACTACCGAAAATTTACCGGTATTGTACCGGTAAGTTACCGGTAAGGTACCGGTAAATTTTCGATGAAAATTTTTATTTTCCTCGAGGACTACATCAGTGTGTCTTTTCGAATAAACATTTCTAGAGAAATGCCTTTTTCGAGAAATTTTCGAGGAATTTTCAACAAAAATTTTTCGAGGAATTCCTCGAGGAATTTTT</canonical>
            <polymorphic>AGAGTAAGCGTACAAAGAGTCACTGTAAGATTTTCTAGTTTTTTTGAAAAATCGTTTTTGAAAATGCGGTTTTCTTAGTTAGTGGTCAGGTTTCTTGAAATAGCCTTCGTGTGAGATGATTTTTCTTTGTGCATCCAATTAACCAACTCAATCGCATTTTTGAGAATGGTTATCCTCCAATCTTAAACACAAAAGTGTTTTTTCTTATTTCAGAGGAAACTAAACGTGTTCCGAAGAGCCAGTCCATCCACACTGAGCACGCGTTCAACTCAACAATTCTTGGTTCCAAGTCCAGAAATGTCGTGCAAATCAAATCCAGAAACTGTCAAGGTGATCTGTGACTAATGACTTATTTTCAACTAGACAATTGCAGATGAAAAAGTCAATCTCGTTCAGTGAAACCACTCGCAATGCGTTCCGCCGATCGTTTCGTCAAAAAGTTCGTTGTTTTTCTGACCTCGCACATAATATTTTTCAGAGGGGATATGATCACATAATTYTTTCCAATGTTTTGATAAGAGAACCTTGACATCTTGTAAACTCAAATTTTGATGAAAATCTGAGGATAGGTTAAAAATTCACTGGACACTTCTGAACGTTTTAGAAGCCGGTCGCCCATTTCAGTCAAGTTATATCAGTTTGAGTACCTAAAATTGTGATGTTCAAGACCATTTTCTTACCTTCTAGCAGTGTGTGACTACCGATTGTCACTTACCGGTAACGGCTTTTTTGGTAATTTTACCGGTAATTTACCGGTAAAAATTTACCGAAATTTACCGGTAACCTACCGGTAAATTTGAAAACTACCGAAAATTTACCGGTATTGTACCGGTAAGTTACCGGTAAGGTACCGGTAAATTTTCGATGAAAATTTTTATTTTCCTCGAGGACTACATCAGTGTGTCTTTTCGAATAAACATTTCTAGAGAAATGCCTTTTTCGAGAAATTTTCGAGGAATTTTCAACAAAAATTTTTCGAGGAATTCCTCGAGGAATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAGGTGATCTGTGACTAATG</pcr_primer_p1>
		<pcr_primer_p2>TTTAACCTATCCTCAGATTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAAGGTGATCTGTGACTAATGACTTATTTTCAACTAGACAATTGCAGATGAAAAAGTCAATCTCGTTCAGTGAAACCACTCGCAATGCGTTCCGCCGATCGTTTCGTCAAAAAGTTCGTTGTTTTTCTGACCTCGCACATAATATTTTTCAGAGGGGATATGATCACATAATTTTTTCCAATGTTTTGATAAGAGAACCTTGACATCTTGTAAACTCAAATTTTGATGAAAATCTGAGGATAGGTTAAA</canonical_amplicon>
		<polymorphic_amplicon>TCAAGGTGATCTGTGACTAATGACTTATTTTCAACTAGACAATTGCAGATGAAAAAGTCAATCTCGTTCAGTGAAACCACTCGCAATGCGTTCCGCCGATCGTTTCGTCAAAAAGTTCGTTGTTTTTCTGACCTCGCACATAATATTTTTCAGAGGGGATATGATCACATAATTYTTTCCAATGTTTTGATAAGAGAACCTTGACATCTTGTAAACTCAAATTTTGATGAAAATCTGAGGATAGGTTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2578</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1146787</contig_pos>
        <strand>+</strand>
        <context>ATTATTATTT[C/G]TGTAGTCCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAAGTTTGAAATTTTTATAAATTTCCGATGTTCTAAGCTGATTATTATTT</left_flank>
        <right_flank>TGTAGTCCCTCTAGGTAATGGAAAAAAATTTTTCAGAGTCTGGAAAGCAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCTACTTTTCAAAACAATATTCAAAGTTCAGCGTTCCCGAACCAGTTGTTCTCCCCACCGAGCAAATCGTTCAAAAACGTATCAAACTCAAAATGGTTGATTTGGACGCTGAGATTGCCAAATTAAATATGCAAGTATGTTTTTATAGACATAAAACAAAAATCACATCACTTTTCGTTTTTTCCGCTTGTCTTTGCATAATTAAGGTGTTGAAAATGACAGCATATGTTATTAATAATGTGTGGATATGTAGTCTTATTTTGAGCTCAGTCAGTTCCGGAATTTTAGGGTGTTTTTAGATAGTTGGGGAATTTTCTTGGGAGCAGGAAGATTTTTAAAAAATTTGAGGCAGATTTCATGATGATATGTTACCTAATTCGTGGCAACCACCATGAGTTTTGTGGTTTTGAAATATTAATATTACCGATGAACAGAATTTTTTGAATTAAGTTTGAAATTTTTATAAATTTCCGATGTTCTAAGCTGATTATTATTTGTGTAGTCCCTCTAGGTAATGGAAAAAAATTTTTCAGAGTCTGGAAAGCAGTATTCAGATGATCAAGGACTTGGACCAGATGAACGTAGATGCGGTCCAAACTACAGCTGCTCTGGAAGACCAGGATGGTGGGTTCAATAGTTCAACACGGCATTCTTCGAGTTTTTGCGCTTCCCTTATCATTTTCACTCCCTATACAAACCCGCAATCAATAAATTTCAGAACAATTGGACAAAATCGAAGAGAATCTCAGCAAAGTGATCGACGACCTGAATGTAGTCTCAACAAACATCACCGCCATGGAGCATTACTGTGGCTGTGGAATTTTCCGAATTTTTTGGTTGGTCACTGATTTTTTTGCGACAACACGATAATGAAATGTTGTTATTTCAGCGCTCCATTCAAATATTTTCGAAAACGCGAGCGTGACATCATAAAGGAAGAAGTCTTGGAGTAAGAGTCAAACTTTTTATTGTCTCAAGTGGCCTGCATAGAAACAGT</canonical>
            <polymorphic>TTTTCTACTTTTCAAAACAATATTCAAAGTTCAGCGTTCCCGAACCAGTTGTTCTCCCCACCGAGCAAATCGTTCAAAAACGTATCAAACTCAAAATGGTTGATTTGGACGCTGAGATTGCCAAATTAAATATGCAAGTATGTTTTTATAGACATAAAACAAAAATCACATCACTTTTCGTTTTTTCCGCTTGTCTTTGCATAATTAAGGTGTTGAAAATGACAGCATATGTTATTAATAATGTGTGGATATGTAGTCTTATTTTGAGCTCAGTCAGTTCCGGAATTTTAGGGTGTTTTTAGATAGTTGGGGAATTTTCTTGGGAGCAGGAAGATTTTTAAAAAATTTGAGGCAGATTTCATGATGATATGTTACCTAATTCGTGGCAACCACCATGAGTTTTGTGGTTTTGAAATATTAATATTACCGATGAACAGAATTTTTTGAATTAAGTTTGAAATTTTTATAAATTTCCGATGTTCTAAGCTGATTATTATTTSTGTAGTCCCTCTAGGTAATGGAAAAAAATTTTTCAGAGTCTGGAAAGCAGTATTCAGATGATCAAGGACTTGGACCAGATGAACGTAGATGCGGTCCAAACTACAGCTGCTCTGGAAGACCAGGATGGTGGGTTCAATAGTTCAACACGGCATTCTTCGAGTTTTTGCGCTTCCCTTATCATTTTCACTCCCTATACAAACCCGCAATCAATAAATTTCAGAACAATTGGACAAAATCGAAGAGAATCTCAGCAAAGTGATCGACGACCTGAATGTAGTCTCAACAAACATCACCGCCATGGAGCATTACTGTGGCTGTGGAATTTTCCGAATTTTTTGGTTGGTCACTGATTTTTTTGCGACAACACGATAATGAAATGTTGTTATTTCAGCGCTCCATTCAAATATTTTCGAAAACGCGAGCGTGACATCATAAAGGAAGAAGTCTTGGAGTAAGAGTCAAACTTTTTATTGTCTCAAGTGGCCTGCATAGAAACAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>128 108 96 90 72 60 60 56 48 40 39 34 33 27 21 20 17 17 14 7 6 5 2</canonical_bands>
                <polymorphic_bands>224 108 90 72 60 60 56 48 40 39 34 33 27 21 20 17 17 14 7 6 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAGTTTTGTGGTTTTGAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGAACTATTGAACCCACCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGAGTTTTGTGGTTTTGAAATATTAATATTACCGATGAACAGAATTTTTTGAATTAAGTTTGAAATTTTTATAAATTTCCGATGTTCTAAGCTGATTATTATTTGTGTAGTCCCTCTAGGTAATGGAAAAAAATTTTTCAGAGTCTGGAAAGCAGTATTCAGATGATCAAGGACTTGGACCAGATGAACGTAGATGCGGTCCAAACTACAGCTGCTCTGGAAGACCAGGATGGTGGGTTCAATAGTTCA</canonical_amplicon>
		<polymorphic_amplicon>ATGAGTTTTGTGGTTTTGAAATATTAATATTACCGATGAACAGAATTTTTTGAATTAAGTTTGAAATTTTTATAAATTTCCGATGTTCTAAGCTGATTATTATTTSTGTAGTCCCTCTAGGTAATGGAAAAAAATTTTTCAGAGTCTGGAAAGCAGTATTCAGATGATCAAGGACTTGGACCAGATGAACGTAGATGCGGTCCAAACTACAGCTGCTCTGGAAGACCAGGATGGTGGGTTCAATAGTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2579</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1148087</contig_pos>
        <strand>+</strand>
        <context>GTCGCGTCCC[A/G]ATATAGTCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAGGAACCAAAACTGAACAGAATCGAAGAGCTGGTACGTGTCGCGTCCC</left_flank>
        <right_flank>ATATAGTCTTGCACTTTGTCCCGCAAATCATCTGCTTATCAGTTATTATG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATACCTAGTTTTTAAGCTATTTGCCGACTTCTCTAATAACTGTTTTCCGTCTTTTTCAGTACAAAACTGGACCAGAAAGGGGTGTCTTTCCGAAATCGGCATGAAAAACTAGCAACTATCAAAAAATTCTATGAATACAAAGTTTTCCATCTAGTCCTGTTTCACACCTTCCAAACTTTTCAAAGCGATGAAACACTCGACAGTCGAGCTCCAGTCTTCTGAAAATTTTCAAAATGGCCAAAAATCAACTGAAAAACACGTCTTTTTATAATAACCTTATTGTCCGGTATCGACGTTCTCAAATTGATTTTGAAGGGGTCAAAGTTTCTTTTTTTCAGATTAACATGCGACACAATCGAAGACGAATTAGAGCGTAATCTGATGCAAATCGATCAAGGGCTTGAATCTGTAAAAACTTGGCTGTTGATATGCACGTTCAACTCAAAATACAGGAACCAAAACTGAACAGAATCGAAGAGCTGGTACGTGTCGCGTCCCAATATAGTCTTGCACTTTGTCCCGCAAATCATCTGCTTATCAGTTATTATGTTTTGGTTTTTTTCCAGACCGAAACAAACGATTGTGTCGTGGAAGGTGTCAACGACAAGGTGAAAAAACTGCTGCATTAAGCCGTGTTGGCCAAAAAAGAGCATTCCACGGGCAAAATTCTCATGGGTATTACTATAAGTTAACAAAATATTTGATGACTTGCATTATTTACTTTCAATAAGAAGTTTAAAAGTTAAAGTAGAAAAAAACCAATAGCAATGAATAATGTTTCATCACAGTATACAAAAAATTGGTCAGTTCAAAGCAGAGTGTACGGTCGTTGTTCGCTGTTTTCCAGGACTGCACGGCAGTTCAAGAGAACGAGTAGAAGTAGCGGTGTGCTCCGTAGCGTGCTGAAAATTTTTCAGTAAGGTTTATGATCAGATGTTTAAAGTTTTCTCACCAGCTGGAAGGTAGACATCGGACCAATCCTTTCCACGACGTCCCAAA</canonical>
            <polymorphic>AATACCTAGTTTTTAAGCTATTTGCCGACTTCTCTAATAACTGTTTTCCGTCTTTTTCAGTACAAAACTGGACCAGAAAGGGGTGTCTTTCCGAAATCGGCATGAAAAACTAGCAACTATCAAAAAATTCTATGAATACAAAGTTTTCCATCTAGTCCTGTTTCACACCTTCCAAACTTTTCAAAGCGATGAAACACTCGACAGTCGAGCTCCAGTCTTCTGAAAATTTTCAAAATGGCCAAAAATCAACTGAAAAACACGTCTTTTTATAATAACCTTATTGTCCGGTATCGACGTTCTCAAATTGATTTTGAAGGGGTCAAAGTTTCTTTTTTTCAGATTAACATGCGACACAATCGAAGACGAATTAGAGCGTAATCTGATGCAAATCGATCAAGGGCTTGAATCTGTAAAAACTTGGCTGTTGATATGCACGTTCAACTCAAAATACAGGAACCAAAACTGAACAGAATCGAAGAGCTGGTACGTGTCGCGTCCCRATATAGTCTTGCACTTTGTCCCGCAAATCATCTGCTTATCAGTTATTATGTTTTGGTTTTTTTCCAGACCGAAACAAACGATTGTGTCGTGGAAGGTGTCAACGACAAGGTGAAAAAACTGCTGCATTAAGCCGTGTTGGCCAAAAAAGAGCATTCCACGGGCAAAATTCTCATGGGTATTACTATAAGTTAACAAAATATTTGATGACTTGCATTATTTACTTTCAATAAGAAGTTTAAAAGTTAAAGTAGAAAAAAACCAATAGCAATGAATAATGTTTCATCACAGTATACAAAAAATTGGTCAGTTCAAAGCAGAGTGTACGGTCGTTGTTCGCTGTTTTCCAGGACTGCACGGCAGTTCAAGAGAACGAGTAGAAGTAGCGGTGTGCTCCGTAGCGTGCTGAAAATTTTTCAGTAAGGTTTATGATCAGATGTTTAAAGTTTTCTCACCAGCTGGAAGGTAGACATCGGACCAATCCTTTCCACGACGTCCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATACAGGAACCAAAACTGA</pcr_primer_p1>
		<pcr_primer_p2>TTATAGTAATACCCATGAGAATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAAATACAGGAACCAAAACTGAACAGAATCGAAGAGCTGGTACGTGTCGCGTCCCAATATAGTCTTGCACTTTGTCCCGCAAATCATCTGCTTATCAGTTATTATGTTTTGGTTTTTTTCCAGACCGAAACAAACGATTGTGTCGTGGAAGGTGTCAACGACAAGGTGAAAAAACTGCTGCATTAAGCCGTGTTGGCCAAAAAAGAGCATTCCACGGGCAAAATTCTCATGGGTATTACTATAA</canonical_amplicon>
		<polymorphic_amplicon>AAAATACAGGAACCAAAACTGAACAGAATCGAAGAGCTGGTACGTGTCGCGTCCCRATATAGTCTTGCACTTTGTCCCGCAAATCATCTGCTTATCAGTTATTATGTTTTGGTTTTTTTCCAGACCGAAACAAACGATTGTGTCGTGGAAGGTGTCAACGACAAGGTGAAAAAACTGCTGCATTAAGCCGTGTTGGCCAAAAAAGAGCATTCCACGGGCAAAATTCTCATGGGTATTACTATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2580</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1181448</contig_pos>
        <strand>+</strand>
        <context>TCTCTCATTG[A/G]CTCCGTGTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAGAATCCGTTGCATTGCTCTTCGAACTTTTCGGAGAATCTCTCATTG</left_flank>
        <right_flank>CTCCGTGTAACTGCCTGCATTGCTACTGTCATCATCTTCTTCTTCGTTGT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACTATAAATAAATACTTTAATTGAAAAAAGACCAAGTTTAACTTTTCAATGTGAATTTTATCAATCACCTGAATCTATATCTTTAAAATCTCTATTTCAGCACGATTTAATCAATTTTTAAAAGTTGGATTCAACCTAAACAGGATTCCACCTAAATTCGGTTCGGTTCTTTTCTTATCAGTTCATGCTCCATATTATTTCACAATTATCTAAATAATTTATTTTTATCGAATGTACAAGTAAATAGTCTCTAAATCTCTACCCGCCAAAAAGGTTAACAAACGAAAACAAGGTATAAATTAAATTGTGAACGTTTTCCCGGGTTCTAAGCCTTCATGTACGAGTCGCCGTCCATTTGGGTGTTAGCGAATACTGATAACGTCTTGTTTTCAATATTTTTCTGAAAAATATGAATTGAACTACAATTTTTCAAATAAAGCAAACTTCTTCAGAATCCGTTGCATTGCTCTTCGAACTTTTCGGAGAATCTCTCATTGGCTCCGTGTAACTGCCTGCATTGCTACTGTCATCATCTTCTTCTTCGTTGTTATTATTGTTGCTATTATTATTATTGCTGTTGTTGCCATTTCCATTGTTATTACCATTATTAGAGTTGCCACTAAGTTTTCTAAACTTTGCTGCCATGTTCTTGTATCTAAAAGTTTTCTCGTTGAGATACTTGAAAATGTATGGGAAATTGGATTACTTCAAACAGCAGAGGTTTTGTGAACATTGAACATATCCTGGCTGGCACTGACATGGGACTCCGCAAGCGACTACAACTTCAGCATCTGGAATTTTCTGGCTCAAAACTCTGGAAATAAATGGAACCCGGGTTAAGAAATTTGTCAAGAAAACGTTATTATCAGTTATAAAGTATAAAGCATAAGTTAGATACATATTCCAATGCATTCCACATTCATCTTTATCCCCTATTCTGACATGCACGACACCCTTGGGTGGGAGGAGGTGGTAGAGGTTGAGGCATCCGATTTTCT</canonical>
            <polymorphic>TTACTATAAATAAATACTTTAATTGAAAAAAGACCAAGTTTAACTTTTCAATGTGAATTTTATCAATCACCTGAATCTATATCTTTAAAATCTCTATTTCAGCACGATTTAATCAATTTTTAAAAGTTGGATTCAACCTAAACAGGATTCCACCTAAATTCGGTTCGGTTCTTTTCTTATCAGTTCATGCTCCATATTATTTCACAATTATCTAAATAATTTATTTTTATCGAATGTACAAGTAAATAGTCTCTAAATCTCTACCCGCCAAAAAGGTTAACAAACGAAAACAAGGTATAAATTAAATTGTGAACGTTTTCCCGGGTTCTAAGCCTTCATGTACGAGTCGCCGTCCATTTGGGTGTTAGCGAATACTGATAACGTCTTGTTTTCAATATTTTTCTGAAAAATATGAATTGAACTACAATTTTTCAAATAAAGCAAACTTCTTCAGAATCCGTTGCATTGCTCTTCGAACTTTTCGGAGAATCTCTCATTGRCTCCGTGTAACTGCCTGCATTGCTACTGTCATCATCTTCTTCTTCGTTGTTATTATTGTTGCTATTATTATTATTGCTGTTGTTGCCATTTCCATTGTTATTACCATTATTAGAGTTGCCACTAAGTTTTCTAAACTTTGCTGCCATGTTCTTGTATCTAAAAGTTTTCTCGTTGAGATACTTGAAAATGTATGGGAAATTGGATTACTTCAAACAGCAGAGGTTTTGTGAACATTGAACATATCCTGGCTGGCACTGACATGGGACTCCGCAAGCGACTACAACTTCAGCATCTGGAATTTTCTGGCTCAAAACTCTGGAAATAAATGGAACCCGGGTTAAGAAATTTGTCAAGAAAACGTTATTATCAGTTATAAAGTATAAAGCATAAGTTAGATACATATTCCAATGCATTCCACATTCATCTTTATCCCCTATTCTGACATGCACGACACCCTTGGGTGGGAGGAGGTGGTAGAGGTTGAGGCATCCGATTTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>501 330 169</canonical_bands>
                <polymorphic_bands>831 169</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>332 249 193 168 58</canonical_bands>
                <polymorphic_bands>417 332 193 58</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAATAAAGCAAACTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>ATCTCAACGAGAAAACTTTTAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAATAAAGCAAACTTCTTCAGAATCCGTTGCATTGCTCTTCGAACTTTTCGGAGAATCTCTCATTGGCTCCGTGTAACTGCCTGCATTGCTACTGTCATCATCTTCTTCTTCGTTGTTATTATTGTTGCTATTATTATTATTGCTGTTGTTGCCATTTCCATTGTTATTACCATTATTAGAGTTGCCACTAAGTTTTCTAAACTTTGCTGCCATGTTCTTGTATCTAAAAGTTTTCTCGTTGAGAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAATAAAGCAAACTTCTTCAGAATCCGTTGCATTGCTCTTCGAACTTTTCGGAGAATCTCTCATTGRCTCCGTGTAACTGCCTGCATTGCTACTGTCATCATCTTCTTCTTCGTTGTTATTATTGTTGCTATTATTATTATTGCTGTTGTTGCCATTTCCATTGTTATTACCATTATTAGAGTTGCCACTAAGTTTTCTAAACTTTGCTGCCATGTTCTTGTATCTAAAAGTTTTCTCGTTGAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2581</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1265909</contig_pos>
        <strand>+</strand>
        <context>ATACCTATTA[C/G]TTAGTTGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTATATTCGCATCTGATAATGACAAATGGGAAGAGAAAATATACCTATTA</left_flank>
        <right_flank>TTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCTCGAGAGTTGTTGAGGGGCAGCAATTTTCACATGATGCGTATTTTGTGTATTCAGAGGCTGATGGGGATGTTGTACTTTGATCGGTTTGTGATGCGACGATTCCAGAGGTAGACCAATTTTATGATTTTTGTACGATTCTTGTTGCATTGATGTCAGCATACGAGTCGAGTCGAAACTGAAATGAGGAAATTTCATCGTCGTTGTATATTCTTCGTAATTTAGGTACAACGAAGATTTTGATAGAAAACGAACACAACTTTCTCCCGAAATATAACACAAAAGAACAATGAAAAGAAAAAAGAGGGGACTCGGTAAAACTGTCTTTGCGCAATCCTCGGCCGCGGAGATCCGTCGTTGTGTCGTTGTGTCTGCGCGCTCTCGTATCTAATGCACTCTCCTCCCTAACCTAATTTGGCATGGTCCTCTTCGTTTAGTTGTTAGCAAGTATATTCGCATCTGATAATGACAAATGGGAAGAGAAAATATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAA</canonical>
            <polymorphic>TTGCTCGAGAGTTGTTGAGGGGCAGCAATTTTCACATGATGCGTATTTTGTGTATTCAGAGGCTGATGGGGATGTTGTACTTTGATCGGTTTGTGATGCGACGATTCCAGAGGTAGACCAATTTTATGATTTTTGTACGATTCTTGTTGCATTGATGTCAGCATACGAGTCGAGTCGAAACTGAAATGAGGAAATTTCATCGTCGTTGTATATTCTTCGTAATTTAGGTACAACGAAGATTTTGATAGAAAACGAACACAACTTTCTCCCGAAATATAACACAAAAGAACAATGAAAAGAAAAAAGAGGGGACTCGGTAAAACTGTCTTTGCGCAATCCTCGGCCGCGGAGATCCGTCGTTGTGTCGTTGTGTCTGCGCGCTCTCGTATCTAATGCACTCTCCTCCCTAACCTAATTTGGCATGGTCCTCTTCGTTTAGTTGTTAGCAAGTATATTCGCATCTGATAATGACAAATGGGAAGAGAAAATATACCTATTASTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGACTCGGTAAAACTGTCT</pcr_primer_p1>
		<pcr_primer_p2>AAAATATATATAAGTGGTGCAAGGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGGACTCGGTAAAACTGTCTTTGCGCAATCCTCGGCCGCGGAGATCCGTCGTTGTGTCGTTGTGTCTGCGCGCTCTCGTATCTAATGCACTCTCCTCCCTAACCTAATTTGGCATGGTCCTCTTCGTTTAGTTGTTAGCAAGTATATTCGCATCTGATAATGACAAATGGGAAGAGAAAATATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTT</canonical_amplicon>
		<polymorphic_amplicon>GGGACTCGGTAAAACTGTCTTTGCGCAATCCTCGGCCGCGGAGATCCGTCGTTGTGTCGTTGTGTCTGCGCGCTCTCGTATCTAATGCACTCTCCTCCCTAACCTAATTTGGCATGGTCCTCTTCGTTTAGTTGTTAGCAAGTATATTCGCATCTGATAATGACAAATGGGAAGAGAAAATATACCTATTASTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2582</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1265943</contig_pos>
        <strand></strand>
        <context>CTAATCAGTT[C/T]ACCTTGCACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAATATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTT</left_flank>
        <right_flank>ACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACC</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGATGCGTATTTTGTGTATTCAGAGGCTGATGGGGATGTTGTACTTTGATCGGTTTGTGATGCGACGATTCCAGAGGTAGACCAATTTTATGATTTTTGTACGATTCTTGTTGCATTGATGTCAGCATACGAGTCGAGTCGAAACTGAAATGAGGAAATTTCATCGTCGTTGTATATTCTTCGTAATTTAGGTACAACGAAGATTTTGATAGAAAACGAACACAACTTTCTCCCGAAATATAACACAAAAGAACAATGAAAAGAAAAAAGAGGGGACTCGGTAAAACTGTCTTTGCGCAATCCTCGGCCGCGGAGATCCGTCGTTGTGTCGTTGTGTCTGCGCGCTCTCGTATCTAATGCACTCTCCTCCCTAACCTAATTTGGCATGGTCCTCTTCGTTTAGTTGTTAGCAAGTATATTCGCATCTGATAATGACAAATGGGAAGAGAAAATATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGT</canonical>
            <polymorphic>CATGATGCGTATTTTGTGTATTCAGAGGCTGATGGGGATGTTGTACTTTGATCGGTTTGTGATGCGACGATTCCAGAGGTAGACCAATTTTATGATTTTTGTACGATTCTTGTTGCATTGATGTCAGCATACGAGTCGAGTCGAAACTGAAATGAGGAAATTTCATCGTCGTTGTATATTCTTCGTAATTTAGGTACAACGAAGATTTTGATAGAAAACGAACACAACTTTCTCCCGAAATATAACACAAAAGAACAATGAAAAGAAAAAAGAGGGGACTCGGTAAAACTGTCTTTGCGCAATCCTCGGCCGCGGAGATCCGTCGTTGTGTCGTTGTGTCTGCGCGCTCTCGTATCTAATGCACTCTCCTCCCTAACCTAATTTGGCATGGTCCTCTTCGTTTAGTTGTTAGCAAGTATATTCGCATCTGATAATGACAAATGGGAAGAGAAAATATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTYACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>163 151 117 83 69 63 48 43 34 33 29 25 23 21 19 19 18 10 9 8 7 3 3 2</canonical_bands>
                <polymorphic_bands>163 151 117 83 69 63 48 43 34 33 29 28 25 23 19 19 18 10 9 8 3 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAATGACAAATGGGAAGAGAA</pcr_primer_p1>
		<pcr_primer_p2>GATTTTGTGAAATTTGCTTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATAATGACAAATGGGAAGAGAAAATATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATC</canonical_amplicon>
		<polymorphic_amplicon>ATAATGACAAATGGGAAGAGAAAATATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTYACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2583</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1266010</contig_pos>
        <strand>+</strand>
        <context>CACCCGGTCA[A/G]CAGAAAAGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCA</left_flank>
        <right_flank>CAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATTCCAGAGGTAGACCAATTTTATGATTTTTGTACGATTCTTGTTGCATTGATGTCAGCATACGAGTCGAGTCGAAACTGAAATGAGGAAATTTCATCGTCGTTGTATATTCTTCGTAATTTAGGTACAACGAAGATTTTGATAGAAAACGAACACAACTTTCTCCCGAAATATAACACAAAAGAACAATGAAAAGAAAAAAGAGGGGACTCGGTAAAACTGTCTTTGCGCAATCCTCGGCCGCGGAGATCCGTCGTTGTGTCGTTGTGTCTGCGCGCTCTCGTATCTAATGCACTCTCCTCCCTAACCTAATTTGGCATGGTCCTCTTCGTTTAGTTGTTAGCAAGTATATTCGCATCTGATAATGACAAATGGGAAGAGAAAATATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGG</canonical>
            <polymorphic>CGATTCCAGAGGTAGACCAATTTTATGATTTTTGTACGATTCTTGTTGCATTGATGTCAGCATACGAGTCGAGTCGAAACTGAAATGAGGAAATTTCATCGTCGTTGTATATTCTTCGTAATTTAGGTACAACGAAGATTTTGATAGAAAACGAACACAACTTTCTCCCGAAATATAACACAAAAGAACAATGAAAAGAAAAAAGAGGGGACTCGGTAAAACTGTCTTTGCGCAATCCTCGGCCGCGGAGATCCGTCGTTGTGTCGTTGTGTCTGCGCGCTCTCGTATCTAATGCACTCTCCTCCCTAACCTAATTTGGCATGGTCCTCTTCGTTTAGTTGTTAGCAAGTATATTCGCATCTGATAATGACAAATGGGAAGAGAAAATATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCARCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAATGACAAATGGGAAGAGAA</pcr_primer_p1>
		<pcr_primer_p2>GATTTTGTGAAATTTGCTTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATAATGACAAATGGGAAGAGAAAATATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATC</canonical_amplicon>
		<polymorphic_amplicon>ATAATGACAAATGGGAAGAGAAAATATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCARCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2584</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1266034</contig_pos>
        <strand>+</strand>
        <context>ATAATTTCTA[A/G]CAGTTTTGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTA</left_flank>
        <right_flank>CAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGATTTTTGTACGATTCTTGTTGCATTGATGTCAGCATACGAGTCGAGTCGAAACTGAAATGAGGAAATTTCATCGTCGTTGTATATTCTTCGTAATTTAGGTACAACGAAGATTTTGATAGAAAACGAACACAACTTTCTCCCGAAATATAACACAAAAGAACAATGAAAAGAAAAAAGAGGGGACTCGGTAAAACTGTCTTTGCGCAATCCTCGGCCGCGGAGATCCGTCGTTGTGTCGTTGTGTCTGCGCGCTCTCGTATCTAATGCACTCTCCTCCCTAACCTAATTTGGCATGGTCCTCTTCGTTTAGTTGTTAGCAAGTATATTCGCATCTGATAATGACAAATGGGAAGAGAAAATATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATG</canonical>
            <polymorphic>ATGATTTTTGTACGATTCTTGTTGCATTGATGTCAGCATACGAGTCGAGTCGAAACTGAAATGAGGAAATTTCATCGTCGTTGTATATTCTTCGTAATTTAGGTACAACGAAGATTTTGATAGAAAACGAACACAACTTTCTCCCGAAATATAACACAAAAGAACAATGAAAAGAAAAAAGAGGGGACTCGGTAAAACTGTCTTTGCGCAATCCTCGGCCGCGGAGATCCGTCGTTGTGTCGTTGTGTCTGCGCGCTCTCGTATCTAATGCACTCTCCTCCCTAACCTAATTTGGCATGGTCCTCTTCGTTTAGTTGTTAGCAAGTATATTCGCATCTGATAATGACAAATGGGAAGAGAAAATATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTARCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>497 470 33</canonical_bands>
                <polymorphic_bands>530 470</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAATGACAAATGGGAAGAGAA</pcr_primer_p1>
		<pcr_primer_p2>GATTTTGTGAAATTTGCTTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATAATGACAAATGGGAAGAGAAAATATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATC</canonical_amplicon>
		<polymorphic_amplicon>ATAATGACAAATGGGAAGAGAAAATATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTARCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2585</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1266057</contig_pos>
        <strand>+</strand>
        <context>ATGTGTCAAT[C/T]AGGCTTCTAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAAT</left_flank>
        <right_flank>AGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATTGATGTCAGCATACGAGTCGAGTCGAAACTGAAATGAGGAAATTTCATCGTCGTTGTATATTCTTCGTAATTTAGGTACAACGAAGATTTTGATAGAAAACGAACACAACTTTCTCCCGAAATATAACACAAAAGAACAATGAAAAGAAAAAAGAGGGGACTCGGTAAAACTGTCTTTGCGCAATCCTCGGCCGCGGAGATCCGTCGTTGTGTCGTTGTGTCTGCGCGCTCTCGTATCTAATGCACTCTCCTCCCTAACCTAATTTGGCATGGTCCTCTTCGTTTAGTTGTTAGCAAGTATATTCGCATCTGATAATGACAAATGGGAAGAGAAAATATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATTTCATCATCTATCTCT</canonical>
            <polymorphic>GCATTGATGTCAGCATACGAGTCGAGTCGAAACTGAAATGAGGAAATTTCATCGTCGTTGTATATTCTTCGTAATTTAGGTACAACGAAGATTTTGATAGAAAACGAACACAACTTTCTCCCGAAATATAACACAAAAGAACAATGAAAAGAAAAAAGAGGGGACTCGGTAAAACTGTCTTTGCGCAATCCTCGGCCGCGGAGATCCGTCGTTGTGTCGTTGTGTCTGCGCGCTCTCGTATCTAATGCACTCTCCTCCCTAACCTAATTTGGCATGGTCCTCTTCGTTTAGTTGTTAGCAAGTATATTCGCATCTGATAATGACAAATGGGAAGAGAAAATATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATYAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATTTCATCATCTATCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAATGACAAATGGGAAGAGAA</pcr_primer_p1>
		<pcr_primer_p2>GATTTTGTGAAATTTGCTTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATAATGACAAATGGGAAGAGAAAATATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATC</canonical_amplicon>
		<polymorphic_amplicon>ATAATGACAAATGGGAAGAGAAAATATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATYAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2586</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1266097</contig_pos>
        <strand>+</strand>
        <context>GATAAGTATG[A/C]CATACAAGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATG</left_flank>
        <right_flank>CATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGAAATTTCATCGTCGTTGTATATTCTTCGTAATTTAGGTACAACGAAGATTTTGATAGAAAACGAACACAACTTTCTCCCGAAATATAACACAAAAGAACAATGAAAAGAAAAAAGAGGGGACTCGGTAAAACTGTCTTTGCGCAATCCTCGGCCGCGGAGATCCGTCGTTGTGTCGTTGTGTCTGCGCGCTCTCGTATCTAATGCACTCTCCTCCCTAACCTAATTTGGCATGGTCCTCTTCGTTTAGTTGTTAGCAAGTATATTCGCATCTGATAATGACAAATGGGAAGAGAAAATATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATTTCATCATCTATCTCTGATGAACTCACTTTTTCTGATAAATTAAGTGTGTCTATGT</canonical>
            <polymorphic>AGGAAATTTCATCGTCGTTGTATATTCTTCGTAATTTAGGTACAACGAAGATTTTGATAGAAAACGAACACAACTTTCTCCCGAAATATAACACAAAAGAACAATGAAAAGAAAAAAGAGGGGACTCGGTAAAACTGTCTTTGCGCAATCCTCGGCCGCGGAGATCCGTCGTTGTGTCGTTGTGTCTGCGCGCTCTCGTATCTAATGCACTCTCCTCCCTAACCTAATTTGGCATGGTCCTCTTCGTTTAGTTGTTAGCAAGTATATTCGCATCTGATAATGACAAATGGGAAGAGAAAATATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGMCATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATTTCATCATCTATCTCTGATGAACTCACTTTTTCTGATAAATTAAGTGTGTCTATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTGCACCACTTATATATATTTTC</pcr_primer_p1>
		<pcr_primer_p2>TGCCTTTTGTATTCTATATTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCA</canonical_amplicon>
		<polymorphic_amplicon>CCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGMCATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2587</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1266201</contig_pos>
        <strand>+</strand>
        <context>GGCAAGATAT[A/T]TAAAATAACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATAT</left_flank>
        <right_flank>TAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAAGAAAAAAGAGGGGACTCGGTAAAACTGTCTTTGCGCAATCCTCGGCCGCGGAGATCCGTCGTTGTGTCGTTGTGTCTGCGCGCTCTCGTATCTAATGCACTCTCCTCCCTAACCTAATTTGGCATGGTCCTCTTCGTTTAGTTGTTAGCAAGTATATTCGCATCTGATAATGACAAATGGGAAGAGAAAATATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATTTCATCATCTATCTCTGATGAACTCACTTTTTCTGATAAATTAAGTGTGTCTATGTTCCTCGCGTCGAACAGGACCAGTCGAAGATTGAGTTTTGCTGTATTCGAATGATTTTTGTTGAACAGTCTCTGACGTTGTCGAGGTCGAATTAGTCATAAAGTC</canonical>
            <polymorphic>TGAAAAGAAAAAAGAGGGGACTCGGTAAAACTGTCTTTGCGCAATCCTCGGCCGCGGAGATCCGTCGTTGTGTCGTTGTGTCTGCGCGCTCTCGTATCTAATGCACTCTCCTCCCTAACCTAATTTGGCATGGTCCTCTTCGTTTAGTTGTTAGCAAGTATATTCGCATCTGATAATGACAAATGGGAAGAGAAAATATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATWTAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATTTCATCATCTATCTCTGATGAACTCACTTTTTCTGATAAATTAAGTGTGTCTATGTTCCTCGCGTCGAACAGGACCAGTCGAAGATTGAGTTTTGCTGTATTCGAATGATTTTTGTTGAACAGTCTCTGACGTTGTCGAGGTCGAATTAGTCATAAAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCAAATTTCACAAAATCATAAC</pcr_primer_p1>
		<pcr_primer_p2>GAATCCAGGTTTCTTTTTAATTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTC</canonical_amplicon>
		<polymorphic_amplicon>AGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATWTAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2588</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1266216</contig_pos>
        <strand>+</strand>
        <context>ATAACGGAAG[G/T]AACGAAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAG</left_flank>
        <right_flank>AACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGGACTCGGTAAAACTGTCTTTGCGCAATCCTCGGCCGCGGAGATCCGTCGTTGTGTCGTTGTGTCTGCGCGCTCTCGTATCTAATGCACTCTCCTCCCTAACCTAATTTGGCATGGTCCTCTTCGTTTAGTTGTTAGCAAGTATATTCGCATCTGATAATGACAAATGGGAAGAGAAAATATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATTTCATCATCTATCTCTGATGAACTCACTTTTTCTGATAAATTAAGTGTGTCTATGTTCCTCGCGTCGAACAGGACCAGTCGAAGATTGAGTTTTGCTGTATTCGAATGATTTTTGTTGAACAGTCTCTGACGTTGTCGAGGTCGAATTAGTCATAAAGTCATTATGCGGCACAAC</canonical>
            <polymorphic>GGGGACTCGGTAAAACTGTCTTTGCGCAATCCTCGGCCGCGGAGATCCGTCGTTGTGTCGTTGTGTCTGCGCGCTCTCGTATCTAATGCACTCTCCTCCCTAACCTAATTTGGCATGGTCCTCTTCGTTTAGTTGTTAGCAAGTATATTCGCATCTGATAATGACAAATGGGAAGAGAAAATATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGKAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATTTCATCATCTATCTCTGATGAACTCACTTTTTCTGATAAATTAAGTGTGTCTATGTTCCTCGCGTCGAACAGGACCAGTCGAAGATTGAGTTTTGCTGTATTCGAATGATTTTTGTTGAACAGTCTCTGACGTTGTCGAGGTCGAATTAGTCATAAAGTCATTATGCGGCACAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>498 222 134 97 32 17</canonical_bands>
                <polymorphic_bands>515 222 134 97 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCAAATTTCACAAAATCATAAC</pcr_primer_p1>
		<pcr_primer_p2>GAATCCAGGTTTCTTTTTAATTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTC</canonical_amplicon>
		<polymorphic_amplicon>AGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGKAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2589</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1266396</contig_pos>
        <strand>+</strand>
        <context>GAATATGAAT[G/T]TWAAGARWGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAAT</left_flank>
        <right_flank>TTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATTTCATCATCTATCTCTGATGAACTCACTTTTTCTGATAAATTAAGTGTGTCTATGTTCCTCGCGTCGAACAGGACCAGTCGAAGATTGAGTTTTGCTGTATTCGAATGATTTTTGTTGAACAGTCTCTGACGTTGTCGAGGTCGAATTAGTCATAAAGTCATTATGCGGCACAACTGTATGTTGGCTTGAAGATGATACATCCATTGGAATGAACCCGAGCTCTTGACTGAAAAATTCATATTTTTTAGAGTTCCTATATTTTTTTTCTTTCGAAAAATGTTCGAGTACCTGAGACAGTCCATTGTAAAACATTAAAATATTAGAATATGGTTAAAAGACAAAATGTTCATCACC</canonical>
            <polymorphic>ATATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATKTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATTTCATCATCTATCTCTGATGAACTCACTTTTTCTGATAAATTAAGTGTGTCTATGTTCCTCGCGTCGAACAGGACCAGTCGAAGATTGAGTTTTGCTGTATTCGAATGATTTTTGTTGAACAGTCTCTGACGTTGTCGAGGTCGAATTAGTCATAAAGTCATTATGCGGCACAACTGTATGTTGGCTTGAAGATGATACATCCATTGGAATGAACCCGAGCTCTTGACTGAAAAATTCATATTTTTTAGAGTTCCTATATTTTTTTTCTTTCGAAAAATGTTCGAGTACCTGAGACAGTCCATTGTAAAACATTAAAATATTAGAATATGGTTAAAAGACAAAATGTTCATCACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATAGAACGTACAGTTGAAGGAT</pcr_primer_p1>
		<pcr_primer_p2>AATAAAGGCATGTTTTTCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATT</canonical_amplicon>
		<polymorphic_amplicon>CATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATKTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2590</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1266398</contig_pos>
        <strand>+</strand>
        <context>ATATGAATKT[A/T]AAGARWGTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGT</left_flank>
        <right_flank>AAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATTTCATCATCTATCTCTGATGAACTCACTTTTTCTGATAAATTAAGTGTGTCTATGTTCCTCGCGTCGAACAGGACCAGTCGAAGATTGAGTTTTGCTGTATTCGAATGATTTTTGTTGAACAGTCTCTGACGTTGTCGAGGTCGAATTAGTCATAAAGTCATTATGCGGCACAACTGTATGTTGGCTTGAAGATGATACATCCATTGGAATGAACCCGAGCTCTTGACTGAAAAATTCATATTTTTTAGAGTTCCTATATTTTTTTTCTTTCGAAAAATGTTCGAGTACCTGAGACAGTCCATTGTAAAACATTAAAATATTAGAATATGGTTAAAAGACAAAATGTTCATCACCAT</canonical>
            <polymorphic>ATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTWAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATTTCATCATCTATCTCTGATGAACTCACTTTTTCTGATAAATTAAGTGTGTCTATGTTCCTCGCGTCGAACAGGACCAGTCGAAGATTGAGTTTTGCTGTATTCGAATGATTTTTGTTGAACAGTCTCTGACGTTGTCGAGGTCGAATTAGTCATAAAGTCATTATGCGGCACAACTGTATGTTGGCTTGAAGATGATACATCCATTGGAATGAACCCGAGCTCTTGACTGAAAAATTCATATTTTTTAGAGTTCCTATATTTTTTTTCTTTCGAAAAATGTTCGAGTACCTGAGACAGTCCATTGTAAAACATTAAAATATTAGAATATGGTTAAAAGACAAAATGTTCATCACCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>329 272 156 88 66 25 20 19 16 9</canonical_bands>
                <polymorphic_bands>329 272 156 88 75 25 20 19 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATAGAACGTACAGTTGAAGGAT</pcr_primer_p1>
		<pcr_primer_p2>AATAAAGGCATGTTTTTCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATT</canonical_amplicon>
		<polymorphic_amplicon>CATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTWAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2591</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1266404</contig_pos>
        <strand>+</strand>
        <context>ATKTWAAGAR[A/T]GTTAAAAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAG</left_flank>
        <right_flank>GTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAA</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATTTCATCATCTATCTCTGATGAACTCACTTTTTCTGATAAATTAAGTGTGTCTATGTTCCTCGCGTCGAACAGGACCAGTCGAAGATTGAGTTTTGCTGTATTCGAATGATTTTTGTTGAACAGTCTCTGACGTTGTCGAGGTCGAATTAGTCATAAAGTCATTATGCGGCACAACTGTATGTTGGCTTGAAGATGATACATCCATTGGAATGAACCCGAGCTCTTGACTGAAAAATTCATATTTTTTAGAGTTCCTATATTTTTTTTCTTTCGAAAAATGTTCGAGTACCTGAGACAGTCCATTGTAAAACATTAAAATATTAGAATATGGTTAAAAGACAAAATGTTCATCACCATATCGAA</canonical>
            <polymorphic>ATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGWGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATTTCATCATCTATCTCTGATGAACTCACTTTTTCTGATAAATTAAGTGTGTCTATGTTCCTCGCGTCGAACAGGACCAGTCGAAGATTGAGTTTTGCTGTATTCGAATGATTTTTGTTGAACAGTCTCTGACGTTGTCGAGGTCGAATTAGTCATAAAGTCATTATGCGGCACAACTGTATGTTGGCTTGAAGATGATACATCCATTGGAATGAACCCGAGCTCTTGACTGAAAAATTCATATTTTTTAGAGTTCCTATATTTTTTTTCTTTCGAAAAATGTTCGAGTACCTGAGACAGTCCATTGTAAAACATTAAAATATTAGAATATGGTTAAAAGACAAAATGTTCATCACCATATCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATAGAACGTACAGTTGAAGGAT</pcr_primer_p1>
		<pcr_primer_p2>AATAAAGGCATGTTTTTCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATT</canonical_amplicon>
		<polymorphic_amplicon>CATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGWGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2592</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1266422</contig_pos>
        <strand>+</strand>
        <context>AGATTTGAAG[A/T]ATTTTAAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAG</left_flank>
        <right_flank>ATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATTTCATCATCTATCTCTGATGAACTCACTTTTTCTGATAAATTAAGTGTGTCTATGTTCCTCGCGTCGAACAGGACCAGTCGAAGATTGAGTTTTGCTGTATTCGAATGATTTTTGTTGAACAGTCTCTGACGTTGTCGAGGTCGAATTAGTCATAAAGTCATTATGCGGCACAACTGTATGTTGGCTTGAAGATGATACATCCATTGGAATGAACCCGAGCTCTTGACTGAAAAATTCATATTTTTTAGAGTTCCTATATTTTTTTTCTTTCGAAAAATGTTCGAGTACCTGAGACAGTCCATTGTAAAACATTAAAATATTAGAATATGGTTAAAAGACAAAATGTTCATCACCATATCGAAAATATTTCGGAGATGAAC</canonical>
            <polymorphic>GGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGWATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATTTCATCATCTATCTCTGATGAACTCACTTTTTCTGATAAATTAAGTGTGTCTATGTTCCTCGCGTCGAACAGGACCAGTCGAAGATTGAGTTTTGCTGTATTCGAATGATTTTTGTTGAACAGTCTCTGACGTTGTCGAGGTCGAATTAGTCATAAAGTCATTATGCGGCACAACTGTATGTTGGCTTGAAGATGATACATCCATTGGAATGAACCCGAGCTCTTGACTGAAAAATTCATATTTTTTAGAGTTCCTATATTTTTTTTCTTTCGAAAAATGTTCGAGTACCTGAGACAGTCCATTGTAAAACATTAAAATATTAGAATATGGTTAAAAGACAAAATGTTCATCACCATATCGAAAATATTTCGGAGATGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>353 185 175 148 116 23</canonical_bands>
                <polymorphic_bands>528 185 148 116 23</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>148 127 116 106 103 93 89 82 82 31 23</canonical_bands>
                <polymorphic_bands>148 127 124 116 106 103 89 82 82 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATAGAACGTACAGTTGAAGGAT</pcr_primer_p1>
		<pcr_primer_p2>AATAAAGGCATGTTTTTCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATT</canonical_amplicon>
		<polymorphic_amplicon>CATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGWATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2593</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1266462</contig_pos>
        <strand>+</strand>
        <context>AAATTGGGCC[A/T]TTATGAAGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCC</left_flank>
        <right_flank>TTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATTTCATCATCTATCTCTGATGAACTCACTTTTTCTGATAAATTAAGTGTGTCTATGTTCCTCGCGTCGAACAGGACCAGTCGAAGATTGAGTTTTGCTGTATTCGAATGATTTTTGTTGAACAGTCTCTGACGTTGTCGAGGTCGAATTAGTCATAAAGTCATTATGCGGCACAACTGTATGTTGGCTTGAAGATGATACATCCATTGGAATGAACCCGAGCTCTTGACTGAAAAATTCATATTTTTTAGAGTTCCTATATTTTTTTTCTTTCGAAAAATGTTCGAGTACCTGAGACAGTCCATTGTAAAACATTAAAATATTAGAATATGGTTAAAAGACAAAATGTTCATCACCATATCGAAAATATTTCGGAGATGAACAATTTTTAGTTATTTATCACAGACACTGAAATCAGTAATA</canonical>
            <polymorphic>TATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCWTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATTTCATCATCTATCTCTGATGAACTCACTTTTTCTGATAAATTAAGTGTGTCTATGTTCCTCGCGTCGAACAGGACCAGTCGAAGATTGAGTTTTGCTGTATTCGAATGATTTTTGTTGAACAGTCTCTGACGTTGTCGAGGTCGAATTAGTCATAAAGTCATTATGCGGCACAACTGTATGTTGGCTTGAAGATGATACATCCATTGGAATGAACCCGAGCTCTTGACTGAAAAATTCATATTTTTTAGAGTTCCTATATTTTTTTTCTTTCGAAAAATGTTCGAGTACCTGAGACAGTCCATTGTAAAACATTAAAATATTAGAATATGGTTAAAAGACAAAATGTTCATCACCATATCGAAAATATTTCGGAGATGAACAATTTTTAGTTATTTATCACAGACACTGAAATCAGTAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATAGAACGTACAGTTGAAGGAT</pcr_primer_p1>
		<pcr_primer_p2>AATAAAGGCATGTTTTTCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATT</canonical_amplicon>
		<polymorphic_amplicon>CATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCWTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2594</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1267695</contig_pos>
        <strand></strand>
        <context>GATGTTCGAG[C/T]ACCTGAAGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAG</left_flank>
        <right_flank>ACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAATCTCACTTTTCAGTAAGTTCCAAAGGCACTTTAATTTTATACTTGAGAAGCATTTTCAGCTTGCTCTCCAACTCCACAGTAGCATCTCGCAAGCGTTCATCGAATATATGTTTGAACTTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCTTTATAAAGATCCCCAAGACTTCATGGGATCCTTAGCATGAACGAAAAACAACTCACAGCATGGAAGGGCTAGTGCTTGGAAGATAACTCGTGATTGATCCGGTGTTGGAATATAGTATATTGCCTAGGGATGCAAATCTGAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAAAATTGCTAAAATGATTCGTCAAACTTACTGTTCAGTGAGCTCCAAAGGAACTTTCATTTTATACTCAAGAAGCATTTTC</canonical>
            <polymorphic>TTAATCTCACTTTTCAGTAAGTTCCAAAGGCACTTTAATTTTATACTTGAGAAGCATTTTCAGCTTGCTCTCCAACTCCACAGTAGCATCTCGCAAGCGTTCATCGAATATATGTTTGAACTTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGYACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCTTTATAAAGATCCCCAAGACTTCATGGGATCCTTAGCATGAACGAAAAACAACTCACAGCATGGAAGGGCTAGTGCTTGGAAGATAACTCGTGATTGATCCGGTGTTGGAATATAGTATATTGCCTAGGGATGCAAATCTGAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAAAATTGCTAAAATGATTCGTCAAACTTACTGTTCAGTGAGCTCCAAAGGAACTTTCATTTTATACTCAAGAAGCATTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>461 340 161 38</canonical_bands>
                <polymorphic_bands>801 161 38</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>461 340 161 38</canonical_bands>
                <polymorphic_bands>801 161 38</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>495 305 140 60</canonical_bands>
                <polymorphic_bands>635 305 60</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>130 122 111 106 79 68 61 48 47 46 42 23 21 19 19 19 18 12 9</canonical_bands>
                <polymorphic_bands>176 122 111 106 79 68 61 48 47 42 23 21 19 19 19 18 12 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTGAAGATGATACATCCATTG</pcr_primer_p1>
		<pcr_primer_p2>AAAATGTTGATTGTCCCTTGT</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>CTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTT</canonical_amplicon>
		<polymorphic_amplicon>CTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGYACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2595</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1267653</contig_pos>
        <strand>+</strand>
        <context>WGGGTTCCTA[A/T]ATTTTTTCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTA</left_flank>
        <right_flank>ATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAAAGTTGGTGAGACATCAAATTTTGCTAAAACTGATTCATTAATCTCACTTTTCAGTAAGTTCCAAAGGCACTTTAATTTTATACTTGAGAAGCATTTTCAGCTTGCTCTCCAACTCCACAGTAGCATCTCGCAAGCGTTCATCGAATATATGTTTGAACTTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCTTTATAAAGATCCCCAAGACTTCATGGGATCCTTAGCATGAACGAAAAACAACTCACAGCATGGAAGGGCTAGTGCTTGGAAGATAACTCGTGATTGATCCGGTGTTGGAATATAGTATATTGCCTAGGGATGCAAATCTGAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAAAATTGCTAAAATGATTCGTCAAACTTACTGTTCAGTG</canonical>
            <polymorphic>TTCAAAGTTGGTGAGACATCAAATTTTGCTAAAACTGATTCATTAATCTCACTTTTCAGTAAGTTCCAAAGGCACTTTAATTTTATACTTGAGAAGCATTTTCAGCTTGCTCTCCAACTCCACAGTAGCATCTCGCAAGCGTTCATCGAATATATGTTTGAACTTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTAWATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCTTTATAAAGATCCCCAAGACTTCATGGGATCCTTAGCATGAACGAAAAACAACTCACAGCATGGAAGGGCTAGTGCTTGGAAGATAACTCGTGATTGATCCGGTGTTGGAATATAGTATATTGCCTAGGGATGCAAATCTGAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAAAATTGCTAAAATGATTCGTCAAACTTACTGTTCAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTGCTAACATTTCTCTGAAT</pcr_primer_p1>
		<pcr_primer_p2>TGCTTACTGTTATAAAATGGACTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCA</canonical_amplicon>
		<polymorphic_amplicon>GAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTAWATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2596</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1267643</contig_pos>
        <strand>+</strand>
        <context>CATAKTTTTT[A/T]GGGTTCCTAW</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTT</left_flank>
        <right_flank>GGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAAACATTTTCAAAGTTGGTGAGACATCAAATTTTGCTAAAACTGATTCATTAATCTCACTTTTCAGTAAGTTCCAAAGGCACTTTAATTTTATACTTGAGAAGCATTTTCAGCTTGCTCTCCAACTCCACAGTAGCATCTCGCAAGCGTTCATCGAATATATGTTTGAACTTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCTTTATAAAGATCCCCAAGACTTCATGGGATCCTTAGCATGAACGAAAAACAACTCACAGCATGGAAGGGCTAGTGCTTGGAAGATAACTCGTGATTGATCCGGTGTTGGAATATAGTATATTGCCTAGGGATGCAAATCTGAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAAAATTGCTAAAATGATTCGTCAAACTTA</canonical>
            <polymorphic>AATAAACATTTTCAAAGTTGGTGAGACATCAAATTTTGCTAAAACTGATTCATTAATCTCACTTTTCAGTAAGTTCCAAAGGCACTTTAATTTTATACTTGAGAAGCATTTTCAGCTTGCTCTCCAACTCCACAGTAGCATCTCGCAAGCGTTCATCGAATATATGTTTGAACTTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTWGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCTTTATAAAGATCCCCAAGACTTCATGGGATCCTTAGCATGAACGAAAAACAACTCACAGCATGGAAGGGCTAGTGCTTGGAAGATAACTCGTGATTGATCCGGTGTTGGAATATAGTATATTGCCTAGGGATGCAAATCTGAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAAAATTGCTAAAATGATTCGTCAAACTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTGCTAACATTTCTCTGAAT</pcr_primer_p1>
		<pcr_primer_p2>TGCTTACTGTTATAAAATGGACTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCA</canonical_amplicon>
		<polymorphic_amplicon>GAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTWGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2597</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1267637</contig_pos>
        <strand>+</strand>
        <context>AAAATGCATA[G/T]TTTTTWGGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATA</left_flank>
        <right_flank>TTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAATTTTGCTAAAACTGATTCATTAATCTCACTTTTCAGTAAGTTCCAAAGGCACTTTAATTTTATACTTGAGAAGCATTTTCAGCTTGCTCTCCAACTCCACAGTAGCATCTCGCAAGCGTTCATCGAATATATGTTTGAACTTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCTTTATAAAGATCCCCAAGACTTCATGGGATCCTTAGCATGAACGAAAAACAACTCACAGCATGGAAGGGCTAGTGCTTGGAAGATAACTCGTGATTGATCCGGTGTTGGAATATAGTATATTGCCTAGGGATGCAAATCTGAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAAAATTGCTAAAATGATTCGTCA</canonical>
            <polymorphic>GCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAATTTTGCTAAAACTGATTCATTAATCTCACTTTTCAGTAAGTTCCAAAGGCACTTTAATTTTATACTTGAGAAGCATTTTCAGCTTGCTCTCCAACTCCACAGTAGCATCTCGCAAGCGTTCATCGAATATATGTTTGAACTTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATAKTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCTTTATAAAGATCCCCAAGACTTCATGGGATCCTTAGCATGAACGAAAAACAACTCACAGCATGGAAGGGCTAGTGCTTGGAAGATAACTCGTGATTGATCCGGTGTTGGAATATAGTATATTGCCTAGGGATGCAAATCTGAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAAAATTGCTAAAATGATTCGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTGCTAACATTTCTCTGAAT</pcr_primer_p1>
		<pcr_primer_p2>TGCTTACTGTTATAAAATGGACTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCA</canonical_amplicon>
		<polymorphic_amplicon>GAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATAKTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2598</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1267626</contig_pos>
        <strand>+</strand>
        <context>YTCTTGTCTG[A/G]AAAATGCATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTG</left_flank>
        <right_flank>AAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAATCTAAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAATTTTGCTAAAACTGATTCATTAATCTCACTTTTCAGTAAGTTCCAAAGGCACTTTAATTTTATACTTGAGAAGCATTTTCAGCTTGCTCTCCAACTCCACAGTAGCATCTCGCAAGCGTTCATCGAATATATGTTTGAACTTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCTTTATAAAGATCCCCAAGACTTCATGGGATCCTTAGCATGAACGAAAAACAACTCACAGCATGGAAGGGCTAGTGCTTGGAAGATAACTCGTGATTGATCCGGTGTTGGAATATAGTATATTGCCTAGGGATGCAAATCTGAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAAAATTGCTAAA</canonical>
            <polymorphic>CAAATCTAAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAATTTTGCTAAAACTGATTCATTAATCTCACTTTTCAGTAAGTTCCAAAGGCACTTTAATTTTATACTTGAGAAGCATTTTCAGCTTGCTCTCCAACTCCACAGTAGCATCTCGCAAGCGTTCATCGAATATATGTTTGAACTTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGRAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCTTTATAAAGATCCCCAAGACTTCATGGGATCCTTAGCATGAACGAAAAACAACTCACAGCATGGAAGGGCTAGTGCTTGGAAGATAACTCGTGATTGATCCGGTGTTGGAATATAGTATATTGCCTAGGGATGCAAATCTGAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAAAATTGCTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>352 232 122 115 53 51 44 19 12</canonical_bands>
                <polymorphic_bands>352 232 134 115 53 51 44 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGTGCTAACATTTCTCTGAAT</pcr_primer_p1>
		<pcr_primer_p2>TGCTTACTGTTATAAAATGGACTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCA</canonical_amplicon>
		<polymorphic_amplicon>GAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGRAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2599</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1267616</contig_pos>
        <strand>+</strand>
        <context>TGAATCCGAG[C/T]TCTTGTCTGR</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAG</left_flank>
        <right_flank>TCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTAGGGATGCAAATCTAAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAATTTTGCTAAAACTGATTCATTAATCTCACTTTTCAGTAAGTTCCAAAGGCACTTTAATTTTATACTTGAGAAGCATTTTCAGCTTGCTCTCCAACTCCACAGTAGCATCTCGCAAGCGTTCATCGAATATATGTTTGAACTTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCTTTATAAAGATCCCCAAGACTTCATGGGATCCTTAGCATGAACGAAAAACAACTCACAGCATGGAAGGGCTAGTGCTTGGAAGATAACTCGTGATTGATCCGGTGTTGGAATATAGTATATTGCCTAGGGATGCAAATCTGAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAA</canonical>
            <polymorphic>CCTAGGGATGCAAATCTAAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAATTTTGCTAAAACTGATTCATTAATCTCACTTTTCAGTAAGTTCCAAAGGCACTTTAATTTTATACTTGAGAAGCATTTTCAGCTTGCTCTCCAACTCCACAGTAGCATCTCGCAAGCGTTCATCGAATATATGTTTGAACTTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGYTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCTTTATAAAGATCCCCAAGACTTCATGGGATCCTTAGCATGAACGAAAAACAACTCACAGCATGGAAGGGCTAGTGCTTGGAAGATAACTCGTGATTGATCCGGTGTTGGAATATAGTATATTGCCTAGGGATGCAAATCTGAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTGCTAACATTTCTCTGAAT</pcr_primer_p1>
		<pcr_primer_p2>TGCTTACTGTTATAAAATGGACTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCA</canonical_amplicon>
		<polymorphic_amplicon>GAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGYTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2600</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1267580</contig_pos>
        <strand>+</strand>
        <context>CTTTATGTTG[A/G]CTTGAAGATG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTG</left_flank>
        <right_flank>CTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTGAACTGACCCGGTGTTTGTATATAGTATATTGCCTAGGGATGCAAATCTAAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAATTTTGCTAAAACTGATTCATTAATCTCACTTTTCAGTAAGTTCCAAAGGCACTTTAATTTTATACTTGAGAAGCATTTTCAGCTTGCTCTCCAACTCCACAGTAGCATCTCGCAAGCGTTCATCGAATATATGTTTGAACTTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCTTTATAAAGATCCCCAAGACTTCATGGGATCCTTAGCATGAACGAAAAACAACTCACAGCATGGAAGGGCTAGTGCTTGGAAGATAACTCGTGATTGATCCGGTGTTGGAATATAGTATATTGCCTAGGGATGCAAATCTGAAAGCA</canonical>
            <polymorphic>CTCTGAACTGACCCGGTGTTTGTATATAGTATATTGCCTAGGGATGCAAATCTAAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAATTTTGCTAAAACTGATTCATTAATCTCACTTTTCAGTAAGTTCCAAAGGCACTTTAATTTTATACTTGAGAAGCATTTTCAGCTTGCTCTCCAACTCCACAGTAGCATCTCGCAAGCGTTCATCGAATATATGTTTGAACTTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGRCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCTTTATAAAGATCCCCAAGACTTCATGGGATCCTTAGCATGAACGAAAAACAACTCACAGCATGGAAGGGCTAGTGCTTGGAAGATAACTCGTGATTGATCCGGTGTTGGAATATAGTATATTGCCTAGGGATGCAAATCTGAAAGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>336 214 178 108 86 78</canonical_bands>
                <polymorphic_bands>444 214 178 86 78</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGTGCTAACATTTCTCTGAAT</pcr_primer_p1>
		<pcr_primer_p2>TGCTTACTGTTATAAAATGGACTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCA</canonical_amplicon>
		<polymorphic_amplicon>GAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGRCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2601</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1267536</contig_pos>
        <strand>+</strand>
        <context>TGTTKTCGAG[A/G]TCGCATTGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAG</left_flank>
        <right_flank>TCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAAGAACTCACGGCATCGAAGGGCAAGTGTTTGGAACGTAACTCTGAACTGACCCGGTGTTTGTATATAGTATATTGCCTAGGGATGCAAATCTAAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAATTTTGCTAAAACTGATTCATTAATCTCACTTTTCAGTAAGTTCCAAAGGCACTTTAATTTTATACTTGAGAAGCATTTTCAGCTTGCTCTCCAACTCCACAGTAGCATCTCGCAAGCGTTCATCGAATATATGTTTGAACTTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCTTTATAAAGATCCCCAAGACTTCATGGGATCCTTAGCATGAACGAAAAACAACTCACAGCATGGAAGGGCTAGTGCTTGGAAGATAACTCGTGATTGATCCGG</canonical>
            <polymorphic>CAAAAAGAACTCACGGCATCGAAGGGCAAGTGTTTGGAACGTAACTCTGAACTGACCCGGTGTTTGTATATAGTATATTGCCTAGGGATGCAAATCTAAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAATTTTGCTAAAACTGATTCATTAATCTCACTTTTCAGTAAGTTCCAAAGGCACTTTAATTTTATACTTGAGAAGCATTTTCAGCTTGCTCTCCAACTCCACAGTAGCATCTCGCAAGCGTTCATCGAATATATGTTTGAACTTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGRTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCTTTATAAAGATCCCCAAGACTTCATGGGATCCTTAGCATGAACGAAAAACAACTCACAGCATGGAAGGGCTAGTGCTTGGAAGATAACTCGTGATTGATCCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTGCTAACATTTCTCTGAAT</pcr_primer_p1>
		<pcr_primer_p2>TGCTTACTGTTATAAAATGGACTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCA</canonical_amplicon>
		<polymorphic_amplicon>GAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGRTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2602</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1267530</contig_pos>
        <strand>+</strand>
        <context>CTTTRATGTT[G/T]TCGAGRTCGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTT</left_flank>
        <right_flank>TCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAAGCAAAAAGAACTCACGGCATCGAAGGGCAAGTGTTTGGAACGTAACTCTGAACTGACCCGGTGTTTGTATATAGTATATTGCCTAGGGATGCAAATCTAAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAATTTTGCTAAAACTGATTCATTAATCTCACTTTTCAGTAAGTTCCAAAGGCACTTTAATTTTATACTTGAGAAGCATTTTCAGCTTGCTCTCCAACTCCACAGTAGCATCTCGCAAGCGTTCATCGAATATATGTTTGAACTTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCTTTATAAAGATCCCCAAGACTTCATGGGATCCTTAGCATGAACGAAAAACAACTCACAGCATGGAAGGGCTAGTGCTTGGAAGATAACTCGTGATTG</canonical>
            <polymorphic>AACAAGCAAAAAGAACTCACGGCATCGAAGGGCAAGTGTTTGGAACGTAACTCTGAACTGACCCGGTGTTTGTATATAGTATATTGCCTAGGGATGCAAATCTAAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAATTTTGCTAAAACTGATTCATTAATCTCACTTTTCAGTAAGTTCCAAAGGCACTTTAATTTTATACTTGAGAAGCATTTTCAGCTTGCTCTCCAACTCCACAGTAGCATCTCGCAAGCGTTCATCGAATATATGTTTGAACTTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTKTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCTTTATAAAGATCCCCAAGACTTCATGGGATCCTTAGCATGAACGAAAAACAACTCACAGCATGGAAGGGCTAGTGCTTGGAAGATAACTCGTGATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGTGCTAACATTTCTCTGA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTACTGTTATAAAATGGACTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCA</canonical_amplicon>
		<polymorphic_amplicon>TGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTKTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2603</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1267524</contig_pos>
        <strand>+</strand>
        <context>GGCAGTCTTT[A/G]ATGTTKTCGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTT</left_flank>
        <right_flank>ATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCGAAACAAGCAAAAAGAACTCACGGCATCGAAGGGCAAGTGTTTGGAACGTAACTCTGAACTGACCCGGTGTTTGTATATAGTATATTGCCTAGGGATGCAAATCTAAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAATTTTGCTAAAACTGATTCATTAATCTCACTTTTCAGTAAGTTCCAAAGGCACTTTAATTTTATACTTGAGAAGCATTTTCAGCTTGCTCTCCAACTCCACAGTAGCATCTCGCAAGCGTTCATCGAATATATGTTTGAACTTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCTTTATAAAGATCCCCAAGACTTCATGGGATCCTTAGCATGAACGAAAAACAACTCACAGCATGGAAGGGCTAGTGCTTGGAAGATAACTCG</canonical>
            <polymorphic>CTTCGAAACAAGCAAAAAGAACTCACGGCATCGAAGGGCAAGTGTTTGGAACGTAACTCTGAACTGACCCGGTGTTTGTATATAGTATATTGCCTAGGGATGCAAATCTAAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAATTTTGCTAAAACTGATTCATTAATCTCACTTTTCAGTAAGTTCCAAAGGCACTTTAATTTTATACTTGAGAAGCATTTTCAGCTTGCTCTCCAACTCCACAGTAGCATCTCGCAAGCGTTCATCGAATATATGTTTGAACTTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTRATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCTTTATAAAGATCCCCAAGACTTCATGGGATCCTTAGCATGAACGAAAAACAACTCACAGCATGGAAGGGCTAGTGCTTGGAAGATAACTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAATTTCTCACAGAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTCCAATGGATGTATCATCTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTRATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2604</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1267472</contig_pos>
        <strand>+</strand>
        <context>TCCATTCGTA[G/T]CTTTCTGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTA</left_flank>
        <right_flank>CTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAATAACCTTTTGAGTCCCTTTTCTATGGACTCTTGAAAATTAATGGAAACCTTCGAAACAAGCAAAAAGAACTCACGGCATCGAAGGGCAAGTGTTTGGAACGTAACTCTGAACTGACCCGGTGTTTGTATATAGTATATTGCCTAGGGATGCAAATCTAAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAATTTTGCTAAAACTGATTCATTAATCTCACTTTTCAGTAAGTTCCAAAGGCACTTTAATTTTATACTTGAGAAGCATTTTCAGCTTGCTCTCCAACTCCACAGTAGCATCTCGCAAGCGTTCATCGAATATATGTTTGAACTTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCTTTATAAAGATCCCCAAGACTTCATGGGATCCTTAGCAT</canonical>
            <polymorphic>TTAATAACCTTTTGAGTCCCTTTTCTATGGACTCTTGAAAATTAATGGAAACCTTCGAAACAAGCAAAAAGAACTCACGGCATCGAAGGGCAAGTGTTTGGAACGTAACTCTGAACTGACCCGGTGTTTGTATATAGTATATTGCCTAGGGATGCAAATCTAAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAATTTTGCTAAAACTGATTCATTAATCTCACTTTTCAGTAAGTTCCAAAGGCACTTTAATTTTATACTTGAGAAGCATTTTCAGCTTGCTCTCCAACTCCACAGTAGCATCTCGCAAGCGTTCATCGAATATATGTTTGAACTTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAKCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCTTTATAAAGATCCCCAAGACTTCATGGGATCCTTAGCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>444 286 214 56</canonical_bands>
                <polymorphic_bands>658 286 56</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>336 286 214 108 56</canonical_bands>
                <polymorphic_bands>336 322 286 56</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGAATTTCTCACAGAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTCCAATGGATGTATCATCTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAKCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2605</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1267392</contig_pos>
        <strand>+</strand>
        <context>TTTCAAACAA[A/C]ATGATTTTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAA</left_flank>
        <right_flank>ATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACCATATCGAAAATATTTCGGAGATGAACAATTTTTAGTTATTTATCACAGACACTGAAATCAGTAATATTACGATAACTTAATAACCTTTTGAGTCCCTTTTCTATGGACTCTTGAAAATTAATGGAAACCTTCGAAACAAGCAAAAAGAACTCACGGCATCGAAGGGCAAGTGTTTGGAACGTAACTCTGAACTGACCCGGTGTTTGTATATAGTATATTGCCTAGGGATGCAAATCTAAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAATTTTGCTAAAACTGATTCATTAATCTCACTTTTCAGTAAGTTCCAAAGGCACTTTAATTTTATACTTGAGAAGCATTTTCAGCTTGCTCTCCAACTCCACAGTAGCATCTCGCAAGCGTTCATCGAATATATGTTTGAACTTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATC</canonical>
            <polymorphic>CACCATATCGAAAATATTTCGGAGATGAACAATTTTTAGTTATTTATCACAGACACTGAAATCAGTAATATTACGATAACTTAATAACCTTTTGAGTCCCTTTTCTATGGACTCTTGAAAATTAATGGAAACCTTCGAAACAAGCAAAAAGAACTCACGGCATCGAAGGGCAAGTGTTTGGAACGTAACTCTGAACTGACCCGGTGTTTGTATATAGTATATTGCCTAGGGATGCAAATCTAAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAATTTTGCTAAAACTGATTCATTAATCTCACTTTTCAGTAAGTTCCAAAGGCACTTTAATTTTATACTTGAGAAGCATTTTCAGCTTGCTCTCCAACTCCACAGTAGCATCTCGCAAGCGTTCATCGAATATATGTTTGAACTTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAAMATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 284 95 61 60</canonical_bands>
                <polymorphic_bands>560 284 95 61</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAAGTTCCAAAGGCACTTTAAT</pcr_primer_p1>
		<pcr_primer_p2>ACTCATGGGATACAAAAATGATA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTAAGTTCCAAAGGCACTTTAATTTTATACTTGAGAAGCATTTTCAGCTTGCTCTCCAACTCCACAGTAGCATCTCGCAAGCGTTCATCGAATATATGTTTGAACTTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGT</canonical_amplicon>
		<polymorphic_amplicon>GTAAGTTCCAAAGGCACTTTAATTTTATACTTGAGAAGCATTTTCAGCTTGCTCTCCAACTCCACAGTAGCATCTCGCAAGCGTTCATCGAATATATGTTTGAACTTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAAMATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2606</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1267839</contig_pos>
        <strand></strand>
        <context>aacatgtttc[T/G]cagatgaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTC</left_flank>
        <right_flank>CAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCTTTATAAAGATCCCCAAGACTTCATGGGATCCTTAGCATGAACGAAAAACAACTCACAGCATGGAAGGGCTAGTGCTTGGAAGATAACTCGTGATTGATCCGGTGTTGGAATATAGTATATTGCCTAGGGATGCAAATCTGAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAAAATTGCTAAAATGATTCGTCAAACTTACTGTTCAGTGAGCTCCAAAGGAACTTTCATTTTATACTCAAGAAGCATTTTCAGCTTGATTTCCAACTCCACATTAACATCTTTCAAACGTTCATCAAACAATGTGTTGAAGTTCTTCTTCAATCTGGAAACTGGTATCGCCAAGTTGTGCTCGGCTTTGAATTTTGCACAAAATTTGTTCACACTGAATAATTGT</canonical>
            <polymorphic>TATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCKCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCTTTATAAAGATCCCCAAGACTTCATGGGATCCTTAGCATGAACGAAAAACAACTCACAGCATGGAAGGGCTAGTGCTTGGAAGATAACTCGTGATTGATCCGGTGTTGGAATATAGTATATTGCCTAGGGATGCAAATCTGAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAAAATTGCTAAAATGATTCGTCAAACTTACTGTTCAGTGAGCTCCAAAGGAACTTTCATTTTATACTCAAGAAGCATTTTCAGCTTGATTTCCAACTCCACATTAACATCTTTCAAACGTTCATCAAACAATGTGTTGAAGTTCTTCTTCAATCTGGAAACTGGTATCGCCAAGTTGTGCTCGGCTTTGAATTTTGCACAAAATTTGTTCACACTGAATAATTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>499 374 91 36</canonical_bands>
                <polymorphic_bands>535 374 91</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>266 232 139 122 115 51 44 19 12</canonical_bands>
                <polymorphic_bands>283 266 139 122 115 44 19 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCTGAAGCAGTCCATTTTAT</pcr_primer_p1>
		<pcr_primer_p2>AGAATGGGTCTCATAAAGCTATC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCT</canonical_amplicon>
		<polymorphic_amplicon>ACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCKCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2607</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1448886</contig_pos>
        <strand>+</strand>
        <context>GTGTTTAGAT[G/T]TTTGAAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGAATTCGAAACCGAACCATATGTAAAAAGTTTATTTCTGTGTTTAGAT</left_flank>
        <right_flank>TTTGAAAAAATGGGGGAGAAGAGGAAGAAGAAAAAACTGCGTTTTTTGTG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCGCATTACTTTTGCAATCCCCTGATATTTTTGACATTTTTGATGAAAGTTTTTTTTTCGGTTGACTATTTTTTCAAAATTTTGTACAAGAAACAAGAAAAATTGTCTCTAAATTACCGATTCATTTTATTTCATGATCTGGAATCTGATATATGACTGAAATCATAATTTTAGACTTTAAAATTAATGTTTTTTTTTTCAATAATTGAAAATTTTGAAATAATCTTCAATATGGTGCCATCAATTTTTTGCATTTTCTACTTGTTTCAACAATTTCACTCACCTAATTTATCTAGATTTGCTGGATCGTGATGATCACGAGGATCTTGATGATCTCCGTAACGAACCAAGTCGGGGATCTCAAGTGAATCTGGCGGTGGTCCACCTCCGCCGCTCTCTTCAGAGTCGCTGCAAAATTGTACAGAAGTGTTTATGAGCGGCAAGACAAAAGAATTCGAAACCGAACCATATGTAAAAAGTTTATTTCTGTGTTTAGATTTTTGAAAAAATGGGGGAGAAGAGGAAGAAGAAAAAACTGCGTTTTTTGTGGGTGGGAAAAGAACACACAGAAATCAAGAGCATAGAAAACTTGGACAAAGAGGCATTTGATGATTTTGGGATTTTGGTGGAAAAAAATGTTTTTCTCCTAACACATTCTCAGCGTTTAAGGGCGGAGATATCCGACACCCCATCATGAACTCTTTTTTCTTTGGAGGAATAAGAACTGCTTTTTCAAAAAACTAGAAAAAAGGAAATGTATTAAATGACAGATGGAATGTGTGAGACGATGAGCAGCTTATCATGTTGGTTCGTCGTCTCTTTACTAGTCATCGGACAACGTGAAAAAGAAAATAGACGAAAAATAGTGAGTAGAAATGGAACAGAAGCAAATGCAAAAACAATTGGTTTGTGTGGACATGAATCGGTTGGCGAGTGGCCAAGTAAAGAGTTAAGAGAGCATCATTGTTACATGAGGCTCTCTTTCCAGACGAGGCTATC</canonical>
            <polymorphic>CGCGCATTACTTTTGCAATCCCCTGATATTTTTGACATTTTTGATGAAAGTTTTTTTTTCGGTTGACTATTTTTTCAAAATTTTGTACAAGAAACAAGAAAAATTGTCTCTAAATTACCGATTCATTTTATTTCATGATCTGGAATCTGATATATGACTGAAATCATAATTTTAGACTTTAAAATTAATGTTTTTTTTTTCAATAATTGAAAATTTTGAAATAATCTTCAATATGGTGCCATCAATTTTTTGCATTTTCTACTTGTTTCAACAATTTCACTCACCTAATTTATCTAGATTTGCTGGATCGTGATGATCACGAGGATCTTGATGATCTCCGTAACGAACCAAGTCGGGGATCTCAAGTGAATCTGGCGGTGGTCCACCTCCGCCGCTCTCTTCAGAGTCGCTGCAAAATTGTACAGAAGTGTTTATGAGCGGCAAGACAAAAGAATTCGAAACCGAACCATATGTAAAAAGTTTATTTCTGTGTTTAGATKTTTGAAAAAATGGGGGAGAAGAGGAAGAAGAAAAAACTGCGTTTTTTGTGGGTGGGAAAAGAACACACAGAAATCAAGAGCATAGAAAACTTGGACAAAGAGGCATTTGATGATTTTGGGATTTTGGTGGAAAAAAATGTTTTTCTCCTAACACATTCTCAGCGTTTAAGGGCGGAGATATCCGACACCCCATCATGAACTCTTTTTTCTTTGGAGGAATAAGAACTGCTTTTTCAAAAAACTAGAAAAAAGGAAATGTATTAAATGACAGATGGAATGTGTGAGACGATGAGCAGCTTATCATGTTGGTTCGTCGTCTCTTTACTAGTCATCGGACAACGTGAAAAAGAAAATAGACGAAAAATAGTGAGTAGAAATGGAACAGAAGCAAATGCAAAAACAATTGGTTTGTGTGGACATGAATCGGTTGGCGAGTGGCCAAGTAAAGAGTTAAGAGAGCATCATTGTTACATGAGGCTCTCTTTCCAGACGAGGCTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTCCGTAACGAACCAAGT</pcr_primer_p1>
		<pcr_primer_p2>TCTTGATTTCTGTGTGTTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATCTCCGTAACGAACCAAGTCGGGGATCTCAAGTGAATCTGGCGGTGGTCCACCTCCGCCGCTCTCTTCAGAGTCGCTGCAAAATTGTACAGAAGTGTTTATGAGCGGCAAGACAAAAGAATTCGAAACCGAACCATATGTAAAAAGTTTATTTCTGTGTTTAGATTTTTGAAAAAATGGGGGAGAAGAGGAAGAAGAAAAAACTGCGTTTTTTGTGGGTGGGAAAAGAACACACAGAAATCAAGA</canonical_amplicon>
		<polymorphic_amplicon>ATCTCCGTAACGAACCAAGTCGGGGATCTCAAGTGAATCTGGCGGTGGTCCACCTCCGCCGCTCTCTTCAGAGTCGCTGCAAAATTGTACAGAAGTGTTTATGAGCGGCAAGACAAAAGAATTCGAAACCGAACCATATGTAAAAAGTTTATTTCTGTGTTTAGATKTTTGAAAAAATGGGGGAGAAGAGGAAGAAGAAAAAACTGCGTTTTTTGTGGGTGGGAAAAGAACACACAGAAATCAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2608</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1449030</contig_pos>
        <strand>+</strand>
        <context>AAAATGTTTT[G/T]CTCCTAACAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GACAAAGAGGCATTTGATGATTTTGGGATTTTGGTGGAAAAAAATGTTTT</left_flank>
        <right_flank>CTCCTAACACATTCTCAGCGTTTAAGGGCGGAGATATCCGACACCCCATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTGATATATGACTGAAATCATAATTTTAGACTTTAAAATTAATGTTTTTTTTTTCAATAATTGAAAATTTTGAAATAATCTTCAATATGGTGCCATCAATTTTTTGCATTTTCTACTTGTTTCAACAATTTCACTCACCTAATTTATCTAGATTTGCTGGATCGTGATGATCACGAGGATCTTGATGATCTCCGTAACGAACCAAGTCGGGGATCTCAAGTGAATCTGGCGGTGGTCCACCTCCGCCGCTCTCTTCAGAGTCGCTGCAAAATTGTACAGAAGTGTTTATGAGCGGCAAGACAAAAGAATTCGAAACCGAACCATATGTAAAAAGTTTATTTCTGTGTTTAGATTTTTGAAAAAATGGGGGAGAAGAGGAAGAAGAAAAAACTGCGTTTTTTGTGGGTGGGAAAAGAACACACAGAAATCAAGAGCATAGAAAACTTGGACAAAGAGGCATTTGATGATTTTGGGATTTTGGTGGAAAAAAATGTTTTTCTCCTAACACATTCTCAGCGTTTAAGGGCGGAGATATCCGACACCCCATCATGAACTCTTTTTTCTTTGGAGGAATAAGAACTGCTTTTTCAAAAAACTAGAAAAAAGGAAATGTATTAAATGACAGATGGAATGTGTGAGACGATGAGCAGCTTATCATGTTGGTTCGTCGTCTCTTTACTAGTCATCGGACAACGTGAAAAAGAAAATAGACGAAAAATAGTGAGTAGAAATGGAACAGAAGCAAATGCAAAAACAATTGGTTTGTGTGGACATGAATCGGTTGGCGAGTGGCCAAGTAAAGAGTTAAGAGAGCATCATTGTTACATGAGGCTCTCTTTCCAGACGAGGCTATCATCTATTTGACACAATATCTTTTTGTTTCTCTTTTTCTACTGCTTGAGCATTTGAATAGCGTTCGTGAAAGAGTTGCAGAGTGTTCCTATCATGGAAAAAAGACACTTGGAGATTGAATCAAAGTTTTGCAGATCTTTTTTTAG</canonical>
            <polymorphic>ATCTGATATATGACTGAAATCATAATTTTAGACTTTAAAATTAATGTTTTTTTTTTCAATAATTGAAAATTTTGAAATAATCTTCAATATGGTGCCATCAATTTTTTGCATTTTCTACTTGTTTCAACAATTTCACTCACCTAATTTATCTAGATTTGCTGGATCGTGATGATCACGAGGATCTTGATGATCTCCGTAACGAACCAAGTCGGGGATCTCAAGTGAATCTGGCGGTGGTCCACCTCCGCCGCTCTCTTCAGAGTCGCTGCAAAATTGTACAGAAGTGTTTATGAGCGGCAAGACAAAAGAATTCGAAACCGAACCATATGTAAAAAGTTTATTTCTGTGTTTAGATTTTTGAAAAAATGGGGGAGAAGAGGAAGAAGAAAAAACTGCGTTTTTTGTGGGTGGGAAAAGAACACACAGAAATCAAGAGCATAGAAAACTTGGACAAAGAGGCATTTGATGATTTTGGGATTTTGGTGGAAAAAAATGTTTTKCTCCTAACACATTCTCAGCGTTTAAGGGCGGAGATATCCGACACCCCATCATGAACTCTTTTTTCTTTGGAGGAATAAGAACTGCTTTTTCAAAAAACTAGAAAAAAGGAAATGTATTAAATGACAGATGGAATGTGTGAGACGATGAGCAGCTTATCATGTTGGTTCGTCGTCTCTTTACTAGTCATCGGACAACGTGAAAAAGAAAATAGACGAAAAATAGTGAGTAGAAATGGAACAGAAGCAAATGCAAAAACAATTGGTTTGTGTGGACATGAATCGGTTGGCGAGTGGCCAAGTAAAGAGTTAAGAGAGCATCATTGTTACATGAGGCTCTCTTTCCAGACGAGGCTATCATCTATTTGACACAATATCTTTTTGTTTCTCTTTTTCTACTGCTTGAGCATTTGAATAGCGTTCGTGAAAGAGTTGCAGAGTGTTCCTATCATGGAAAAAAGACACTTGGAGATTGAATCAAAGTTTTGCAGATCTTTTTTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGAAATCAAGAGCATAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>GACGAACCAACATGATAAGC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAGAAATCAAGAGCATAGAAAACTTGGACAAAGAGGCATTTGATGATTTTGGGATTTTGGTGGAAAAAAATGTTTTTCTCCTAACACATTCTCAGCGTTTAAGGGCGGAGATATCCGACACCCCATCATGAACTCTTTTTTCTTTGGAGGAATAAGAACTGCTTTTTCAAAAAACTAGAAAAAAGGAAATGTATTAAATGACAGATGGAATGTGTGAGACGATGAGCAGCTTATCATGTTGGTTCGTC</canonical_amplicon>
		<polymorphic_amplicon>ACAGAAATCAAGAGCATAGAAAACTTGGACAAAGAGGCATTTGATGATTTTGGGATTTTGGTGGAAAAAAATGTTTTKCTCCTAACACATTCTCAGCGTTTAAGGGCGGAGATATCCGACACCCCATCATGAACTCTTTTTTCTTTGGAGGAATAAGAACTGCTTTTTCAAAAAACTAGAAAAAAGGAAATGTATTAAATGACAGATGGAATGTGTGAGACGATGAGCAGCTTATCATGTTGGTTCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2609</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1449383</contig_pos>
        <strand>+</strand>
        <context>CAGACGAGGC[C/T]ATCATCTATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAGTTAAGAGAGCATCATTGTTACATGAGGCTCTCTTTCCAGACGAGGC</left_flank>
        <right_flank>ATCATCTATTTGACACAATATCTTTTTGTTTCTCTTTTTCTACTGCTTGA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTGAAAAAATGGGGGAGAAGAGGAAGAAGAAAAAACTGCGTTTTTTGTGGGTGGGAAAAGAACACACAGAAATCAAGAGCATAGAAAACTTGGACAAAGAGGCATTTGATGATTTTGGGATTTTGGTGGAAAAAAATGTTTTTCTCCTAACACATTCTCAGCGTTTAAGGGCGGAGATATCCGACACCCCATCATGAACTCTTTTTTCTTTGGAGGAATAAGAACTGCTTTTTCAAAAAACTAGAAAAAAGGAAATGTATTAAATGACAGATGGAATGTGTGAGACGATGAGCAGCTTATCATGTTGGTTCGTCGTCTCTTTACTAGTCATCGGACAACGTGAAAAAGAAAATAGACGAAAAATAGTGAGTAGAAATGGAACAGAAGCAAATGCAAAAACAATTGGTTTGTGTGGACATGAATCGGTTGGCGAGTGGCCAAGTAAAGAGTTAAGAGAGCATCATTGTTACATGAGGCTCTCTTTCCAGACGAGGCTATCATCTATTTGACACAATATCTTTTTGTTTCTCTTTTTCTACTGCTTGAGCATTTGAATAGCGTTCGTGAAAGAGTTGCAGAGTGTTCCTATCATGGAAAAAAGACACTTGGAGATTGAATCAAAGTTTTGCAGATCTTTTTTTAGATGGCCCTCTCAATTGTTCCTTGTCTACTAATCTTTTGAGAAGCTAGGATCATATTTCGTCAAAATTTCATTGCGTACTCAAAATTGCTGGTGTTCAATGAATAATATTTATACTAAATATTACTTCAGTTGAGTATAATTTTTTAATCTTGTCTGGAATCAATGCAGGTGAAGAGCGGATATTTTGTTAAACTTTTATGGAAGGAGCGACCTACGGTATTTTTTGAGCGTATTTTAAACTTTATTTTCTTATTTTCTCAATTTTCATGATGTTCCTATGTAAATCGGTAAAAATGAATTAAAATTACGAAAGCCATTTAAAAGCGATAAAAATAGTCGAAAAAATTAGAAAC</canonical>
            <polymorphic>ATTTTTGAAAAAATGGGGGAGAAGAGGAAGAAGAAAAAACTGCGTTTTTTGTGGGTGGGAAAAGAACACACAGAAATCAAGAGCATAGAAAACTTGGACAAAGAGGCATTTGATGATTTTGGGATTTTGGTGGAAAAAAATGTTTTTCTCCTAACACATTCTCAGCGTTTAAGGGCGGAGATATCCGACACCCCATCATGAACTCTTTTTTCTTTGGAGGAATAAGAACTGCTTTTTCAAAAAACTAGAAAAAAGGAAATGTATTAAATGACAGATGGAATGTGTGAGACGATGAGCAGCTTATCATGTTGGTTCGTCGTCTCTTTACTAGTCATCGGACAACGTGAAAAAGAAAATAGACGAAAAATAGTGAGTAGAAATGGAACAGAAGCAAATGCAAAAACAATTGGTTTGTGTGGACATGAATCGGTTGGCGAGTGGCCAAGTAAAGAGTTAAGAGAGCATCATTGTTACATGAGGCTCTCTTTCCAGACGAGGCYATCATCTATTTGACACAATATCTTTTTGTTTCTCTTTTTCTACTGCTTGAGCATTTGAATAGCGTTCGTGAAAGAGTTGCAGAGTGTTCCTATCATGGAAAAAAGACACTTGGAGATTGAATCAAAGTTTTGCAGATCTTTTTTTAGATGGCCCTCTCAATTGTTCCTTGTCTACTAATCTTTTGAGAAGCTAGGATCATATTTCGTCAAAATTTCATTGCGTACTCAAAATTGCTGGTGTTCAATGAATAATATTTATACTAAATATTACTTCAGTTGAGTATAATTTTTTAATCTTGTCTGGAATCAATGCAGGTGAAGAGCGGATATTTTGTTAAACTTTTATGGAAGGAGCGACCTACGGTATTTTTTGAGCGTATTTTAAACTTTATTTTCTTATTTTCTCAATTTTCATGATGTTCCTATGTAAATCGGTAAAAATGAATTAAAATTACGAAAGCCATTTAAAAGCGATAAAAATAGTCGAAAAAATTAGAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>299 270 153 142 40 39 39 18</canonical_bands>
                <polymorphic_bands>299 270 171 142 40 39 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAAAAGAAAATAGACGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GATAGGAACACTCTGCAACTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAAAAAGAAAATAGACGAAAAATAGTGAGTAGAAATGGAACAGAAGCAAATGCAAAAACAATTGGTTTGTGTGGACATGAATCGGTTGGCGAGTGGCCAAGTAAAGAGTTAAGAGAGCATCATTGTTACATGAGGCTCTCTTTCCAGACGAGGCTATCATCTATTTGACACAATATCTTTTTGTTTCTCTTTTTCTACTGCTTGAGCATTTGAATAGCGTTCGTGAAAGAGTTGCAGAGTGTTCCTATC</canonical_amplicon>
		<polymorphic_amplicon>TGAAAAAGAAAATAGACGAAAAATAGTGAGTAGAAATGGAACAGAAGCAAATGCAAAAACAATTGGTTTGTGTGGACATGAATCGGTTGGCGAGTGGCCAAGTAAAGAGTTAAGAGAGCATCATTGTTACATGAGGCTCTCTTTCCAGACGAGGCYATCATCTATTTGACACAATATCTTTTTGTTTCTCTTTTTCTACTGCTTGAGCATTTGAATAGCGTTCGTGAAAGAGTTGCAGAGTGTTCCTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2610</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1453800</contig_pos>
        <strand>+</strand>
        <context>TTTTTAATTT[C/T]CGAAAACTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAAATGGTGGTGGTTTCTCCTATATGAGTCCGTATAGTTTTTTAATTT</left_flank>
        <right_flank>CGAAAACTGAGAGCCATATATCCACATCTATCCAGATTGATGGAGGACAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTAAAAACTTGATCATGGATATAAAAACTGCCAATTGATAAAAACACTTCCAGTTTTTACGAATTTTACGGATTAAATTTTACGACACTCGTACAATTTTACGAGTACCAAAAAATCCTAAAATCCGTAAAATTCGTAAATCTCGTAAACGTAAAATCACATCCCTGATACACATGTTCCAATTTCAGGATTTCCATAAAAAAGAGAGGTGCGCATCTTTTCTTTTCTCACAAAATGACAAATTTGGAATTCAAATTTGAACAATGGTTGATTGAGTGCAAATTGGTGGATGATGAGGTTGCAAAAAAGATGACAGCTATACGATTGAAAGAAACGAACCTTTGATTTATACCAAAAACAGAAAATGAGATAGCTTAAAAGTAGGTTCGGTGGTTTAAGGCATGAAAGTAAGGGCGGTGATTGATGACAGTATATCACAATTTTTAATTAAAATGGTGGTGGTTTCTCCTATATGAGTCCGTATAGTTTTTTAATTTTCGAAAACTGAGAGCCATATATCCACATCTATCCAGATTGATGGAGGACAGTAGATAAATGAAATTTTTAATGGAAATGTTTTCTACATCTTAGCCAGTTCACTGATCCATTGAACATGAGAAGGTAGGAGAATTTCAGTTTCTTTACCTCCTTTAATAGAAGCTCAATCAAACTGTAAACTTCGAGCTCAATTATTTGAATTCCTGTGAAAGATAACAAAAAATTGTCAACCAATAAAATGTTGGTGCTATTATGATAAATACATTGTCAGTTAAAAACATTTTTGTATAGTTCACAGGAATCGAGATTAAGTCCGAAGCTGACAGTTTGAATAGGTTTCTATTAGAGGAAATAAGGCATGTCATCGACAGGTCTTTGCCGTCACAGTCCATGAAATTTCCGCTTTTCAAATAAAATACTCTTAACAGAAATTCGAAAGTATCATTTTTGTCTTTTTTGTTTTGGTTAATATTCTTAAAAGTTGATTGACCCCCAGCTCA</canonical>
            <polymorphic>AATTAAAAACTTGATCATGGATATAAAAACTGCCAATTGATAAAAACACTTCCAGTTTTTACGAATTTTACGGATTAAATTTTACGACACTCGTACAATTTTACGAGTACCAAAAAATCCTAAAATCCGTAAAATTCGTAAATCTCGTAAACGTAAAATCACATCCCTGATACACATGTTCCAATTTCAGGATTTCCATAAAAAAGAGAGGTGCGCATCTTTTCTTTTCTCACAAAATGACAAATTTGGAATTCAAATTTGAACAATGGTTGATTGAGTGCAAATTGGTGGATGATGAGGTTGCAAAAAAGATGACAGCTATACGATTGAAAGAAACGAACCTTTGATTTATACCAAAAACAGAAAATGAGATAGCTTAAAAGTAGGTTCGGTGGTTTAAGGCATGAAAGTAAGGGCGGTGATTGATGACAGTATATCACAATTTTTAATTAAAATGGTGGTGGTTTCTCCTATATGAGTCCGTATAGTTTTTTAATTTYCGAAAACTGAGAGCCATATATCCACATCTATCCAGATTGATGGAGGACAGTAGATAAATGAAATTTTTAATGGAAATGTTTTCTACATCTTAGCCAGTTCACTGATCCATTGAACATGAGAAGGTAGGAGAATTTCAGTTTCTTTACCTCCTTTAATAGAAGCTCAATCAAACTGTAAACTTCGAGCTCAATTATTTGAATTCCTGTGAAAGATAACAAAAAATTGTCAACCAATAAAATGTTGGTGCTATTATGATAAATACATTGTCAGTTAAAAACATTTTTGTATAGTTCACAGGAATCGAGATTAAGTCCGAAGCTGACAGTTTGAATAGGTTTCTATTAGAGGAAATAAGGCATGTCATCGACAGGTCTTTGCCGTCACAGTCCATGAAATTTCCGCTTTTCAAATAAAATACTCTTAACAGAAATTCGAAAGTATCATTTTTGTCTTTTTTGTTTTGGTTAATATTCTTAAAAGTTGATTGACCCCCAGCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>500 433 67</canonical_bands>
                <polymorphic_bands>933 67</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 182 120 68 66 63</canonical_bands>
                <polymorphic_bands>683 120 68 66 63</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAAAAACAGAAAATGAGATAG</pcr_primer_p1>
		<pcr_primer_p2>GTGAACTGGCTAAGATGTAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCAAAAACAGAAAATGAGATAGCTTAAAAGTAGGTTCGGTGGTTTAAGGCATGAAAGTAAGGGCGGTGATTGATGACAGTATATCACAATTTTTAATTAAAATGGTGGTGGTTTCTCCTATATGAGTCCGTATAGTTTTTTAATTTTCGAAAACTGAGAGCCATATATCCACATCTATCCAGATTGATGGAGGACAGTAGATAAATGAAATTTTTAATGGAAATGTTTTCTACATCTTAGCCAGTTCAC</canonical_amplicon>
		<polymorphic_amplicon>ACCAAAAACAGAAAATGAGATAGCTTAAAAGTAGGTTCGGTGGTTTAAGGCATGAAAGTAAGGGCGGTGATTGATGACAGTATATCACAATTTTTAATTAAAATGGTGGTGGTTTCTCCTATATGAGTCCGTATAGTTTTTTAATTTYCGAAAACTGAGAGCCATATATCCACATCTATCCAGATTGATGGAGGACAGTAGATAAATGAAATTTTTAATGGAAATGTTTTCTACATCTTAGCCAGTTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2611</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1454814</contig_pos>
        <strand>+</strand>
        <context>GCCCCATCGA[C/T]CATCAAAGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCATGGGACCCAAAAATGTTTTCCAAAAATATAGACTCAGCCCCATCGA</left_flank>
        <right_flank>CATCAAAGCTGTCCTTTATCTCCCTGGCCACAATAAAATTGTTAGATGAG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCCAGAATTCGGAAACCGAATAAAAAATCCTGATTAGTATACGGTAGGTTGAAATAAAATTGGCAGATGTACGACTGAAGAAAATTAAGTGTCAAATTATACAAAAAACAGAGTTTGAACAATGGGAATGAACAGAAGGATATGGAAATTGGGAGAAAAGAAAAAAGAAACAGTAAACCTCCCACGTTGATTAATGATTTCGAATCAAAATTGCGATTGGCGTTTCGAAATGGTACTGCCGATTCAAATCTTTTGGAATTATTGAAAGTGGGAAAGCACCAACCGATTCCTTTCGGATTGATTCCATTTTTTAATTGCTCATATACTCTTACGCGTTTTTACAAAATTTGATGTTTCTTTTTTGGCAAAATATTGGATGATGAAAAGTGTAAGTGGAAGAAACATTGGGTTTATTCCAGAAGAGTGGTAGTAAATTGGGACTGTCAGATCATGGGACCCAAAAATGTTTTCCAAAAATATAGACTCAGCCCCATCGACCATCAAAGCTGTCCTTTATCTCCCTGGCCACAATAAAATTGTTAGATGAGAATCTCCTGAATCTTGTTCTTGAATATTTTTGAAAATCATATACGAAAATAACATTTCTCGGTTTCAGATGCTTTTTAAATTCTTCTAGAGTTCATATCATTATAATTTGTTTTTTATTAAGAAAAAGTATTCAAAAACACGATTTAGAGGATGGGACTGTGGCCGGAGGGATGTGACCATGGTCGTGTTATTGGGGCCGTTTTCTAACGAAAAACAGAGCGAAATATGGGTGAAAAGATGGAAGATGAAACAAAAAGCGAATGAAGTATGCACTGTATCTGAACTGGCGAAGCATGAATATTATGAATTGGTTCAGAAATGACAATGACCAAGTTCGAAATTCAAAAAAGAAGAAACTTAGATATTTCTTCACTAGAACAAACCCAGACAGATATGAATGAACTTCATATATTCTCTCCAGGTGTGAAAATCCCATTCAAAAACGAGAT</canonical>
            <polymorphic>ATCCCAGAATTCGGAAACCGAATAAAAAATCCTGATTAGTATACGGTAGGTTGAAATAAAATTGGCAGATGTACGACTGAAGAAAATTAAGTGTCAAATTATACAAAAAACAGAGTTTGAACAATGGGAATGAACAGAAGGATATGGAAATTGGGAGAAAAGAAAAAAGAAACAGTAAACCTCCCACGTTGATTAATGATTTCGAATCAAAATTGCGATTGGCGTTTCGAAATGGTACTGCCGATTCAAATCTTTTGGAATTATTGAAAGTGGGAAAGCACCAACCGATTCCTTTCGGATTGATTCCATTTTTTAATTGCTCATATACTCTTACGCGTTTTTACAAAATTTGATGTTTCTTTTTTGGCAAAATATTGGATGATGAAAAGTGTAAGTGGAAGAAACATTGGGTTTATTCCAGAAGAGTGGTAGTAAATTGGGACTGTCAGATCATGGGACCCAAAAATGTTTTCCAAAAATATAGACTCAGCCCCATCGAYCATCAAAGCTGTCCTTTATCTCCCTGGCCACAATAAAATTGTTAGATGAGAATCTCCTGAATCTTGTTCTTGAATATTTTTGAAAATCATATACGAAAATAACATTTCTCGGTTTCAGATGCTTTTTAAATTCTTCTAGAGTTCATATCATTATAATTTGTTTTTTATTAAGAAAAAGTATTCAAAAACACGATTTAGAGGATGGGACTGTGGCCGGAGGGATGTGACCATGGTCGTGTTATTGGGGCCGTTTTCTAACGAAAAACAGAGCGAAATATGGGTGAAAAGATGGAAGATGAAACAAAAAGCGAATGAAGTATGCACTGTATCTGAACTGGCGAAGCATGAATATTATGAATTGGTTCAGAAATGACAATGACCAAGTTCGAAATTCAAAAAAGAAGAAACTTAGATATTTCTTCACTAGAACAAACCCAGACAGATATGAATGAACTTCATATATTCTCTCCAGGTGTGAAAATCCCATTCAAAAACGAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTTTTACAAAATTTGATGTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAAAATATTCAAGAACAAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTTTTTACAAAATTTGATGTTTCTTTTTTGGCAAAATATTGGATGATGAAAAGTGTAAGTGGAAGAAACATTGGGTTTATTCCAGAAGAGTGGTAGTAAATTGGGACTGTCAGATCATGGGACCCAAAAATGTTTTCCAAAAATATAGACTCAGCCCCATCGACCATCAAAGCTGTCCTTTATCTCCCTGGCCACAATAAAATTGTTAGATGAGAATCTCCTGAATCTTGTTCTTGAATATTTTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>CGTTTTTACAAAATTTGATGTTTCTTTTTTGGCAAAATATTGGATGATGAAAAGTGTAAGTGGAAGAAACATTGGGTTTATTCCAGAAGAGTGGTAGTAAATTGGGACTGTCAGATCATGGGACCCAAAAATGTTTTCCAAAAATATAGACTCAGCCCCATCGAYCATCAAAGCTGTCCTTTATCTCCCTGGCCACAATAAAATTGTTAGATGAGAATCTCCTGAATCTTGTTCTTGAATATTTTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2612</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1454341</contig_pos>
        <strand>+</strand>
        <context>ACCGAATAAA[A/G]AATCCTGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCCAGCTCATCGCAAAGTATTTGATCCCAGAATTCGGAAACCGAATAAA</left_flank>
        <right_flank>AATCCTGATTAGTATACGGTAGGTTGAAATAAAATTGGCAGATGTACGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGGACAGTAGATAAATGAAATTTTTAATGGAAATGTTTTCTACATCTTAGCCAGTTCACTGATCCATTGAACATGAGAAGGTAGGAGAATTTCAGTTTCTTTACCTCCTTTAATAGAAGCTCAATCAAACTGTAAACTTCGAGCTCAATTATTTGAATTCCTGTGAAAGATAACAAAAAATTGTCAACCAATAAAATGTTGGTGCTATTATGATAAATACATTGTCAGTTAAAAACATTTTTGTATAGTTCACAGGAATCGAGATTAAGTCCGAAGCTGACAGTTTGAATAGGTTTCTATTAGAGGAAATAAGGCATGTCATCGACAGGTCTTTGCCGTCACAGTCCATGAAATTTCCGCTTTTCAAATAAAATACTCTTAACAGAAATTCGAAAGTATCATTTTTGTCTTTTTTGTTTTGGTTAATATTCTTAAAAGTTGATTGACCCCCAGCTCATCGCAAAGTATTTGATCCCAGAATTCGGAAACCGAATAAAAAATCCTGATTAGTATACGGTAGGTTGAAATAAAATTGGCAGATGTACGACTGAAGAAAATTAAGTGTCAAATTATACAAAAAACAGAGTTTGAACAATGGGAATGAACAGAAGGATATGGAAATTGGGAGAAAAGAAAAAAGAAACAGTAAACCTCCCACGTTGATTAATGATTTCGAATCAAAATTGCGATTGGCGTTTCGAAATGGTACTGCCGATTCAAATCTTTTGGAATTATTGAAAGTGGGAAAGCACCAACCGATTCCTTTCGGATTGATTCCATTTTTTAATTGCTCATATACTCTTACGCGTTTTTACAAAATTTGATGTTTCTTTTTTGGCAAAATATTGGATGATGAAAAGTGTAAGTGGAAGAAACATTGGGTTTATTCCAGAAGAGTGGTAGTAAATTGGGACTGTCAGATCATGGGACCCAAAAATGTTTTCCAAAAATATAGACTCAGCCCCATCGACCATCAAAGCTGTCCTTTATCTCCCTGG</canonical>
            <polymorphic>GGAGGACAGTAGATAAATGAAATTTTTAATGGAAATGTTTTCTACATCTTAGCCAGTTCACTGATCCATTGAACATGAGAAGGTAGGAGAATTTCAGTTTCTTTACCTCCTTTAATAGAAGCTCAATCAAACTGTAAACTTCGAGCTCAATTATTTGAATTCCTGTGAAAGATAACAAAAAATTGTCAACCAATAAAATGTTGGTGCTATTATGATAAATACATTGTCAGTTAAAAACATTTTTGTATAGTTCACAGGAATCGAGATTAAGTCCGAAGCTGACAGTTTGAATAGGTTTCTATTAGAGGAAATAAGGCATGTCATCGACAGGTCTTTGCCGTCACAGTCCATGAAATTTCCGCTTTTCAAATAAAATACTCTTAACAGAAATTCGAAAGTATCATTTTTGTCTTTTTTGTTTTGGTTAATATTCTTAAAAGTTGATTGACCCCCAGCTCATCGCAAAGTATTTGATCCCAGAATTCGGAAACCGAATAAARAATCCTGATTAGTATACGGTAGGTTGAAATAAAATTGGCAGATGTACGACTGAAGAAAATTAAGTGTCAAATTATACAAAAAACAGAGTTTGAACAATGGGAATGAACAGAAGGATATGGAAATTGGGAGAAAAGAAAAAAGAAACAGTAAACCTCCCACGTTGATTAATGATTTCGAATCAAAATTGCGATTGGCGTTTCGAAATGGTACTGCCGATTCAAATCTTTTGGAATTATTGAAAGTGGGAAAGCACCAACCGATTCCTTTCGGATTGATTCCATTTTTTAATTGCTCATATACTCTTACGCGTTTTTACAAAATTTGATGTTTCTTTTTTGGCAAAATATTGGATGATGAAAAGTGTAAGTGGAAGAAACATTGGGTTTATTCCAGAAGAGTGGTAGTAAATTGGGACTGTCAGATCATGGGACCCAAAAATGTTTTCCAAAAATATAGACTCAGCCCCATCGACCATCAAAGCTGTCCTTTATCTCCCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGAAAGTATCATTTTTGTCTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTTTTCTCCCAATTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCGAAAGTATCATTTTTGTCTTTTTTGTTTTGGTTAATATTCTTAAAAGTTGATTGACCCCCAGCTCATCGCAAAGTATTTGATCCCAGAATTCGGAAACCGAATAAAAAATCCTGATTAGTATACGGTAGGTTGAAATAAAATTGGCAGATGTACGACTGAAGAAAATTAAGTGTCAAATTATACAAAAAACAGAGTTTGAACAATGGGAATGAACAGAAGGATATGGAAATTGGGAGAAAAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTCGAAAGTATCATTTTTGTCTTTTTTGTTTTGGTTAATATTCTTAAAAGTTGATTGACCCCCAGCTCATCGCAAAGTATTTGATCCCAGAATTCGGAAACCGAATAAARAATCCTGATTAGTATACGGTAGGTTGAAATAAAATTGGCAGATGTACGACTGAAGAAAATTAAGTGTCAAATTATACAAAAAACAGAGTTTGAACAATGGGAATGAACAGAAGGATATGGAAATTGGGAGAAAAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2613</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1455069</contig_pos>
        <strand>+</strand>
        <context>GGGCCGTTTT[C/G]TAACGAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGACTGTGGCCGGAGGGATGTGACCATGGTCGTGTTATTGGGGCCGTTTT</left_flank>
        <right_flank>TAACGAAAAACAGAGCGAAATATGGGTGAAAAGATGGAAGATGAAACAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAATTATTGAAAGTGGGAAAGCACCAACCGATTCCTTTCGGATTGATTCCATTTTTTAATTGCTCATATACTCTTACGCGTTTTTACAAAATTTGATGTTTCTTTTTTGGCAAAATATTGGATGATGAAAAGTGTAAGTGGAAGAAACATTGGGTTTATTCCAGAAGAGTGGTAGTAAATTGGGACTGTCAGATCATGGGACCCAAAAATGTTTTCCAAAAATATAGACTCAGCCCCATCGACCATCAAAGCTGTCCTTTATCTCCCTGGCCACAATAAAATTGTTAGATGAGAATCTCCTGAATCTTGTTCTTGAATATTTTTGAAAATCATATACGAAAATAACATTTCTCGGTTTCAGATGCTTTTTAAATTCTTCTAGAGTTCATATCATTATAATTTGTTTTTTATTAAGAAAAAGTATTCAAAAACACGATTTAGAGGATGGGACTGTGGCCGGAGGGATGTGACCATGGTCGTGTTATTGGGGCCGTTTTCTAACGAAAAACAGAGCGAAATATGGGTGAAAAGATGGAAGATGAAACAAAAAGCGAATGAAGTATGCACTGTATCTGAACTGGCGAAGCATGAATATTATGAATTGGTTCAGAAATGACAATGACCAAGTTCGAAATTCAAAAAAGAAGAAACTTAGATATTTCTTCACTAGAACAAACCCAGACAGATATGAATGAACTTCATATATTCTCTCCAGGTGTGAAAATCCCATTCAAAAACGAGATTCATCATATGAAGCGCCTTCGGAACACTCTCTTGAATCCATGCCGTCCCGTACTTTACGGTGCATTGTCGCAGAGTCTAACTGACCAGATTTTTGTTTCTCAAGAAGATGAAAAAATGGGCGGAGTCAACGAAAGATCGGCACGGATTCGCGCTGTCACGAAAACGAGTCAAAACGACGCCCCATTTTTGGGATCTTAATGTTCTCAATCGAAAGGAGGCTGGTACTGCCGGTACTCATCTCCATTTTTGTGGAA</canonical>
            <polymorphic>TGGAATTATTGAAAGTGGGAAAGCACCAACCGATTCCTTTCGGATTGATTCCATTTTTTAATTGCTCATATACTCTTACGCGTTTTTACAAAATTTGATGTTTCTTTTTTGGCAAAATATTGGATGATGAAAAGTGTAAGTGGAAGAAACATTGGGTTTATTCCAGAAGAGTGGTAGTAAATTGGGACTGTCAGATCATGGGACCCAAAAATGTTTTCCAAAAATATAGACTCAGCCCCATCGACCATCAAAGCTGTCCTTTATCTCCCTGGCCACAATAAAATTGTTAGATGAGAATCTCCTGAATCTTGTTCTTGAATATTTTTGAAAATCATATACGAAAATAACATTTCTCGGTTTCAGATGCTTTTTAAATTCTTCTAGAGTTCATATCATTATAATTTGTTTTTTATTAAGAAAAAGTATTCAAAAACACGATTTAGAGGATGGGACTGTGGCCGGAGGGATGTGACCATGGTCGTGTTATTGGGGCCGTTTTSTAACGAAAAACAGAGCGAAATATGGGTGAAAAGATGGAAGATGAAACAAAAAGCGAATGAAGTATGCACTGTATCTGAACTGGCGAAGCATGAATATTATGAATTGGTTCAGAAATGACAATGACCAAGTTCGAAATTCAAAAAAGAAGAAACTTAGATATTTCTTCACTAGAACAAACCCAGACAGATATGAATGAACTTCATATATTCTCTCCAGGTGTGAAAATCCCATTCAAAAACGAGATTCATCATATGAAGCGCCTTCGGAACACTCTCTTGAATCCATGCCGTCCCGTACTTTACGGTGCATTGTCGCAGAGTCTAACTGACCAGATTTTTGTTTCTCAAGAAGATGAAAAAATGGGCGGAGTCAACGAAAGATCGGCACGGATTCGCGCTGTCACGAAAACGAGTCAAAACGACGCCCCATTTTTGGGATCTTAATGTTCTCAATCGAAAGGAGGCTGGTACTGCCGGTACTCATCTCCATTTTTGTGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAACATTTCTCGGTTTCAGAT</pcr_primer_p1>
		<pcr_primer_p2>GTTCAGATACAGTGCATACTTCA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AATAACATTTCTCGGTTTCAGATGCTTTTTAAATTCTTCTAGAGTTCATATCATTATAATTTGTTTTTTATTAAGAAAAAGTATTCAAAAACACGATTTAGAGGATGGGACTGTGGCCGGAGGGATGTGACCATGGTCGTGTTATTGGGGCCGTTTTCTAACGAAAAACAGAGCGAAATATGGGTGAAAAGATGGAAGATGAAACAAAAAGCGAATGAAGTATGCACTGTATCTGAAC</canonical_amplicon>
		<polymorphic_amplicon>AATAACATTTCTCGGTTTCAGATGCTTTTTAAATTCTTCTAGAGTTCATATCATTATAATTTGTTTTTTATTAAGAAAAAGTATTCAAAAACACGATTTAGAGGATGGGACTGTGGCCGGAGGGATGTGACCATGGTCGTGTTATTGGGGCCGTTTTSTAACGAAAAACAGAGCGAAATATGGGTGAAAAGATGGAAGATGAAACAAAAAGCGAATGAAGTATGCACTGTATCTGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2615</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1494545</contig_pos>
        <strand>+</strand>
        <context>CACTCAAGTT[A/G]TGTGACTGGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACTATCTCGGAACGCTGTCAAACTGCAAATTGGTGTAGACACTCAAGTT</left_flank>
        <right_flank>TGTGACTGGCATACAGGCATACAGATCAGAAAGTGCGATTCCTCTTCTTT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGTTTTACCTACCTCTTTCTCATTTTCGTTTTTGTTTGCATTATCCAGATGCCATCATCAGTTTTCAATTGAGTCCTTCCAATAGTTAGTATATATCGCAACGTTTTTGCAAATTTCATAGTAAAGGTTAAAAGTGTTAGCAATACGTTATCAGTTTGTGTTTATTGCTTAGAGTTTATATAAATTACAGTTTTCAAAATTTTTTTTCACTTTAAATTTCGCAATCCAAAATTTCTGATTCCGAAAAGTTTCAAAAGAAATTTTCGTCCAAATTCCAATCAGTTCATAAAGTTTCGTTGTGCACTACAACTTTACGGTTCTCCTTGGGCTCCAACAATCTATTTCGTCATGCGTGTCAATAAAAACTGTGCGTTATCAGTACTCAAAAACAAGCACGCCTAGAATTTTCCCAAACCTATGCAGAAAATATGTATTAGCCATAGCAAAAACTATCTCGGAACGCTGTCAAACTGCAAATTGGTGTAGACACTCAAGTTGTGTGACTGGCATACAGGCATACAGATCAGAAAGTGCGATTCCTCTTCTTTTTCTTTTTTTTTCAATTTTTTTCTTACCTCTATTCCGAGTAGTGAAAGTCTTGTTTGCGTGCGTTTGTGCCACCATCATCTCCCACCAACCGGGGTTAATATTTGCAATGGTATTTACCCGAAGGAGACACGACTTAGAGAGTTTGAGACCGTCATTCATTCTTTTTGCCCCGTCCGATTTTCTCATTATCTTCGTTGATTTTATGATTACCACTGTACTTTTTCAGGAATCAGGAAAAATGAATTTCGAATTTTTGCGGACGCTGCACGGCTTCATCAATTTCATCCAAGTCTTGTTCGGATTCGCTGCTCTTTTTGCGTGCTCTTTCATCTGGAGGGATACTAATCTCTATTTTCAGTTTGTTTATAATGTGAGTTATAGTTATAGCTAATTTTTAAATTCAAAATTTATAGTTTTCATTAAAAACCGTTTTCAGGGATTTGGATGGC</canonical>
            <polymorphic>TTTGTTTTACCTACCTCTTTCTCATTTTCGTTTTTGTTTGCATTATCCAGATGCCATCATCAGTTTTCAATTGAGTCCTTCCAATAGTTAGTATATATCGCAACGTTTTTGCAAATTTCATAGTAAAGGTTAAAAGTGTTAGCAATACGTTATCAGTTTGTGTTTATTGCTTAGAGTTTATATAAATTACAGTTTTCAAAATTTTTTTTCACTTTAAATTTCGCAATCCAAAATTTCTGATTCCGAAAAGTTTCAAAAGAAATTTTCGTCCAAATTCCAATCAGTTCATAAAGTTTCGTTGTGCACTACAACTTTACGGTTCTCCTTGGGCTCCAACAATCTATTTCGTCATGCGTGTCAATAAAAACTGTGCGTTATCAGTACTCAAAAACAAGCACGCCTAGAATTTTCCCAAACCTATGCAGAAAATATGTATTAGCCATAGCAAAAACTATCTCGGAACGCTGTCAAACTGCAAATTGGTGTAGACACTCAAGTTRTGTGACTGGCATACAGGCATACAGATCAGAAAGTGCGATTCCTCTTCTTTTTCTTTTTTTTTCAATTTTTTTCTTACCTCTATTCCGAGTAGTGAAAGTCTTGTTTGCGTGCGTTTGTGCCACCATCATCTCCCACCAACCGGGGTTAATATTTGCAATGGTATTTACCCGAAGGAGACACGACTTAGAGAGTTTGAGACCGTCATTCATTCTTTTTGCCCCGTCCGATTTTCTCATTATCTTCGTTGATTTTATGATTACCACTGTACTTTTTCAGGAATCAGGAAAAATGAATTTCGAATTTTTGCGGACGCTGCACGGCTTCATCAATTTCATCCAAGTCTTGTTCGGATTCGCTGCTCTTTTTGCGTGCTCTTTCATCTGGAGGGATACTAATCTCTATTTTCAGTTTGTTTATAATGTGAGTTATAGTTATAGCTAATTTTTAAATTCAAAATTTATAGTTTTCATTAAAAACCGTTTTCAGGGATTTGGATGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>138 92 88 83 76 59 55 54 52 52 49 45 31 25 24 17 15 13 11 8 6 3 2 2</canonical_bands>
                <polymorphic_bands>138 92 88 83 76 59 55 54 52 52 49 45 31 25 24 17 15 13 13 8 6 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAAAAACTGTGCGTTATCAGT</pcr_primer_p1>
		<pcr_primer_p2>CGCAAACAAGACTTTCACTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATAAAAACTGTGCGTTATCAGTACTCAAAAACAAGCACGCCTAGAATTTTCCCAAACCTATGCAGAAAATATGTATTAGCCATAGCAAAAACTATCTCGGAACGCTGTCAAACTGCAAATTGGTGTAGACACTCAAGTTGTGTGACTGGCATACAGGCATACAGATCAGAAAGTGCGATTCCTCTTCTTTTTCTTTTTTTTTCAATTTTTTTCTTACCTCTATTCCGAGTAGTGAAAGTCTTGTTTGCG</canonical_amplicon>
		<polymorphic_amplicon>AATAAAAACTGTGCGTTATCAGTACTCAAAAACAAGCACGCCTAGAATTTTCCCAAACCTATGCAGAAAATATGTATTAGCCATAGCAAAAACTATCTCGGAACGCTGTCAAACTGCAAATTGGTGTAGACACTCAAGTTRTGTGACTGGCATACAGGCATACAGATCAGAAAGTGCGATTCCTCTTCTTTTTCTTTTTTTTTCAATTTTTTTCTTACCTCTATTCCGAGTAGTGAAAGTCTTGTTTGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2616</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1494582</contig_pos>
        <strand>+</strand>
        <context>CAGAAAGTGC[G/T]ATTCCTCTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGACACTCAAGTTGTGTGACTGGCATACAGGCATACAGATCAGAAAGTGC</left_flank>
        <right_flank>ATTCCTCTTCTTTTTCTTTTTTTTTCAATTTTTTTCTTACCTCTATTCCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCATTATCCAGATGCCATCATCAGTTTTCAATTGAGTCCTTCCAATAGTTAGTATATATCGCAACGTTTTTGCAAATTTCATAGTAAAGGTTAAAAGTGTTAGCAATACGTTATCAGTTTGTGTTTATTGCTTAGAGTTTATATAAATTACAGTTTTCAAAATTTTTTTTCACTTTAAATTTCGCAATCCAAAATTTCTGATTCCGAAAAGTTTCAAAAGAAATTTTCGTCCAAATTCCAATCAGTTCATAAAGTTTCGTTGTGCACTACAACTTTACGGTTCTCCTTGGGCTCCAACAATCTATTTCGTCATGCGTGTCAATAAAAACTGTGCGTTATCAGTACTCAAAAACAAGCACGCCTAGAATTTTCCCAAACCTATGCAGAAAATATGTATTAGCCATAGCAAAAACTATCTCGGAACGCTGTCAAACTGCAAATTGGTGTAGACACTCAAGTTGTGTGACTGGCATACAGGCATACAGATCAGAAAGTGCGATTCCTCTTCTTTTTCTTTTTTTTTCAATTTTTTTCTTACCTCTATTCCGAGTAGTGAAAGTCTTGTTTGCGTGCGTTTGTGCCACCATCATCTCCCACCAACCGGGGTTAATATTTGCAATGGTATTTACCCGAAGGAGACACGACTTAGAGAGTTTGAGACCGTCATTCATTCTTTTTGCCCCGTCCGATTTTCTCATTATCTTCGTTGATTTTATGATTACCACTGTACTTTTTCAGGAATCAGGAAAAATGAATTTCGAATTTTTGCGGACGCTGCACGGCTTCATCAATTTCATCCAAGTCTTGTTCGGATTCGCTGCTCTTTTTGCGTGCTCTTTCATCTGGAGGGATACTAATCTCTATTTTCAGTTTGTTTATAATGTGAGTTATAGTTATAGCTAATTTTTAAATTCAAAATTTATAGTTTTCATTAAAAACCGTTTTCAGGGATTTGGATGGCAAACTCTAGTTTTGGCAATATTGTTTTTCACTTGGAT</canonical>
            <polymorphic>TTGCATTATCCAGATGCCATCATCAGTTTTCAATTGAGTCCTTCCAATAGTTAGTATATATCGCAACGTTTTTGCAAATTTCATAGTAAAGGTTAAAAGTGTTAGCAATACGTTATCAGTTTGTGTTTATTGCTTAGAGTTTATATAAATTACAGTTTTCAAAATTTTTTTTCACTTTAAATTTCGCAATCCAAAATTTCTGATTCCGAAAAGTTTCAAAAGAAATTTTCGTCCAAATTCCAATCAGTTCATAAAGTTTCGTTGTGCACTACAACTTTACGGTTCTCCTTGGGCTCCAACAATCTATTTCGTCATGCGTGTCAATAAAAACTGTGCGTTATCAGTACTCAAAAACAAGCACGCCTAGAATTTTCCCAAACCTATGCAGAAAATATGTATTAGCCATAGCAAAAACTATCTCGGAACGCTGTCAAACTGCAAATTGGTGTAGACACTCAAGTTGTGTGACTGGCATACAGGCATACAGATCAGAAAGTGCKATTCCTCTTCTTTTTCTTTTTTTTTCAATTTTTTTCTTACCTCTATTCCGAGTAGTGAAAGTCTTGTTTGCGTGCGTTTGTGCCACCATCATCTCCCACCAACCGGGGTTAATATTTGCAATGGTATTTACCCGAAGGAGACACGACTTAGAGAGTTTGAGACCGTCATTCATTCTTTTTGCCCCGTCCGATTTTCTCATTATCTTCGTTGATTTTATGATTACCACTGTACTTTTTCAGGAATCAGGAAAAATGAATTTCGAATTTTTGCGGACGCTGCACGGCTTCATCAATTTCATCCAAGTCTTGTTCGGATTCGCTGCTCTTTTTGCGTGCTCTTTCATCTGGAGGGATACTAATCTCTATTTTCAGTTTGTTTATAATGTGAGTTATAGTTATAGCTAATTTTTAAATTCAAAATTTATAGTTTTCATTAAAAACCGTTTTCAGGGATTTGGATGGCAAACTCTAGTTTTGGCAATATTGTTTTTCACTTGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>298 241 186 166 73 36</canonical_bands>
                <polymorphic_bands>539 186 166 73 36</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>298 241 202 186 73</canonical_bands>
                <polymorphic_bands>539 202 186 73</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAAAAACTGTGCGTTATCAGT</pcr_primer_p1>
		<pcr_primer_p2>CGCAAACAAGACTTTCACTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATAAAAACTGTGCGTTATCAGTACTCAAAAACAAGCACGCCTAGAATTTTCCCAAACCTATGCAGAAAATATGTATTAGCCATAGCAAAAACTATCTCGGAACGCTGTCAAACTGCAAATTGGTGTAGACACTCAAGTTGTGTGACTGGCATACAGGCATACAGATCAGAAAGTGCGATTCCTCTTCTTTTTCTTTTTTTTTCAATTTTTTTCTTACCTCTATTCCGAGTAGTGAAAGTCTTGTTTGCG</canonical_amplicon>
		<polymorphic_amplicon>AATAAAAACTGTGCGTTATCAGTACTCAAAAACAAGCACGCCTAGAATTTTCCCAAACCTATGCAGAAAATATGTATTAGCCATAGCAAAAACTATCTCGGAACGCTGTCAAACTGCAAATTGGTGTAGACACTCAAGTTGTGTGACTGGCATACAGGCATACAGATCAGAAAGTGCKATTCCTCTTCTTTTTCTTTTTTTTTCAATTTTTTTCTTACCTCTATTCCGAGTAGTGAAAGTCTTGTTTGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2617</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1494830</contig_pos>
        <strand>+</strand>
        <context>CAGGAATCAG[A/G]AAAAATGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTATCTTCGTTGATTTTATGATTACCACTGTACTTTTTCAGGAATCAG</left_flank>
        <right_flank>AAAAATGAATTTCGAATTTTTGCGGACGCTGCACGGCTTCATCAATTTCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATAAAGTTTCGTTGTGCACTACAACTTTACGGTTCTCCTTGGGCTCCAACAATCTATTTCGTCATGCGTGTCAATAAAAACTGTGCGTTATCAGTACTCAAAAACAAGCACGCCTAGAATTTTCCCAAACCTATGCAGAAAATATGTATTAGCCATAGCAAAAACTATCTCGGAACGCTGTCAAACTGCAAATTGGTGTAGACACTCAAGTTGTGTGACTGGCATACAGGCATACAGATCAGAAAGTGCGATTCCTCTTCTTTTTCTTTTTTTTTCAATTTTTTTCTTACCTCTATTCCGAGTAGTGAAAGTCTTGTTTGCGTGCGTTTGTGCCACCATCATCTCCCACCAACCGGGGTTAATATTTGCAATGGTATTTACCCGAAGGAGACACGACTTAGAGAGTTTGAGACCGTCATTCATTCTTTTTGCCCCGTCCGATTTTCTCATTATCTTCGTTGATTTTATGATTACCACTGTACTTTTTCAGGAATCAGGAAAAATGAATTTCGAATTTTTGCGGACGCTGCACGGCTTCATCAATTTCATCCAAGTCTTGTTCGGATTCGCTGCTCTTTTTGCGTGCTCTTTCATCTGGAGGGATACTAATCTCTATTTTCAGTTTGTTTATAATGTGAGTTATAGTTATAGCTAATTTTTAAATTCAAAATTTATAGTTTTCATTAAAAACCGTTTTCAGGGATTTGGATGGCAAACTCTAGTTTTGGCAATATTGTTTTTCACTTGGATTTTTGCTGTAATGGTATTCCTGTCAAACCTCTTCGACAAAGATGTTGTTGGAACTATTGGAAAAATGAAGGTGAATTTAATAAATTACAGTCCCGGTCAATAAGATCTACAACTGTATATTTTTTGGTAGATTTTCGACCTTTTTGACCTTTTTAAGGAGTCTGGAGCTCGGCTGTCAAGTTTTCAATCTATTAGAAATTACTTGGAGGGTGTTAAACAGACCTCGATTTCAAACATTGATAGAGTTT</canonical>
            <polymorphic>TCATAAAGTTTCGTTGTGCACTACAACTTTACGGTTCTCCTTGGGCTCCAACAATCTATTTCGTCATGCGTGTCAATAAAAACTGTGCGTTATCAGTACTCAAAAACAAGCACGCCTAGAATTTTCCCAAACCTATGCAGAAAATATGTATTAGCCATAGCAAAAACTATCTCGGAACGCTGTCAAACTGCAAATTGGTGTAGACACTCAAGTTGTGTGACTGGCATACAGGCATACAGATCAGAAAGTGCGATTCCTCTTCTTTTTCTTTTTTTTTCAATTTTTTTCTTACCTCTATTCCGAGTAGTGAAAGTCTTGTTTGCGTGCGTTTGTGCCACCATCATCTCCCACCAACCGGGGTTAATATTTGCAATGGTATTTACCCGAAGGAGACACGACTTAGAGAGTTTGAGACCGTCATTCATTCTTTTTGCCCCGTCCGATTTTCTCATTATCTTCGTTGATTTTATGATTACCACTGTACTTTTTCAGGAATCAGRAAAAATGAATTTCGAATTTTTGCGGACGCTGCACGGCTTCATCAATTTCATCCAAGTCTTGTTCGGATTCGCTGCTCTTTTTGCGTGCTCTTTCATCTGGAGGGATACTAATCTCTATTTTCAGTTTGTTTATAATGTGAGTTATAGTTATAGCTAATTTTTAAATTCAAAATTTATAGTTTTCATTAAAAACCGTTTTCAGGGATTTGGATGGCAAACTCTAGTTTTGGCAATATTGTTTTTCACTTGGATTTTTGCTGTAATGGTATTCCTGTCAAACCTCTTCGACAAAGATGTTGTTGGAACTATTGGAAAAATGAAGGTGAATTTAATAAATTACAGTCCCGGTCAATAAGATCTACAACTGTATATTTTTTGGTAGATTTTCGACCTTTTTGACCTTTTTAAGGAGTCTGGAGCTCGGCTGTCAAGTTTTCAATCTATTAGAAATTACTTGGAGGGTGTTAAACAGACCTCGATTTCAAACATTGATAGAGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>490 317 100 86 7</canonical_bands>
                <polymorphic_bands>490 317 107 86</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTAATATTTGCAATGGTATTT</pcr_primer_p1>
		<pcr_primer_p2>GTATCCCTCCAGATGAAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTTAATATTTGCAATGGTATTTACCCGAAGGAGACACGACTTAGAGAGTTTGAGACCGTCATTCATTCTTTTTGCCCCGTCCGATTTTCTCATTATCTTCGTTGATTTTATGATTACCACTGTACTTTTTCAGGAATCAGGAAAAATGAATTTCGAATTTTTGCGGACGCTGCACGGCTTCATCAATTTCATCCAAGTCTTGTTCGGATTCGCTGCTCTTTTTGCGTGCTCTTTCATCTGGAGGGATAC</canonical_amplicon>
		<polymorphic_amplicon>GGTTAATATTTGCAATGGTATTTACCCGAAGGAGACACGACTTAGAGAGTTTGAGACCGTCATTCATTCTTTTTGCCCCGTCCGATTTTCTCATTATCTTCGTTGATTTTATGATTACCACTGTACTTTTTCAGGAATCAGRAAAAATGAATTTCGAATTTTTGCGGACGCTGCACGGCTTCATCAATTTCATCCAAGTCTTGTTCGGATTCGCTGCTCTTTTTGCGTGCTCTTTCATCTGGAGGGATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2618</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1494915</contig_pos>
        <strand>+</strand>
        <context>CTCTTTTTGC[A/G]TGCTCTTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGCTTCATCAATTTCATCCAAGTCTTGTTCGGATTCGCTGCTCTTTTTGC</left_flank>
        <right_flank>TGCTCTTTCATCTGGAGGGATACTAATCTCTATTTTCAGTTTGTTTATAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCGTTATCAGTACTCAAAAACAAGCACGCCTAGAATTTTCCCAAACCTATGCAGAAAATATGTATTAGCCATAGCAAAAACTATCTCGGAACGCTGTCAAACTGCAAATTGGTGTAGACACTCAAGTTGTGTGACTGGCATACAGGCATACAGATCAGAAAGTGCGATTCCTCTTCTTTTTCTTTTTTTTTCAATTTTTTTCTTACCTCTATTCCGAGTAGTGAAAGTCTTGTTTGCGTGCGTTTGTGCCACCATCATCTCCCACCAACCGGGGTTAATATTTGCAATGGTATTTACCCGAAGGAGACACGACTTAGAGAGTTTGAGACCGTCATTCATTCTTTTTGCCCCGTCCGATTTTCTCATTATCTTCGTTGATTTTATGATTACCACTGTACTTTTTCAGGAATCAGGAAAAATGAATTTCGAATTTTTGCGGACGCTGCACGGCTTCATCAATTTCATCCAAGTCTTGTTCGGATTCGCTGCTCTTTTTGCGTGCTCTTTCATCTGGAGGGATACTAATCTCTATTTTCAGTTTGTTTATAATGTGAGTTATAGTTATAGCTAATTTTTAAATTCAAAATTTATAGTTTTCATTAAAAACCGTTTTCAGGGATTTGGATGGCAAACTCTAGTTTTGGCAATATTGTTTTTCACTTGGATTTTTGCTGTAATGGTATTCCTGTCAAACCTCTTCGACAAAGATGTTGTTGGAACTATTGGAAAAATGAAGGTGAATTTAATAAATTACAGTCCCGGTCAATAAGATCTACAACTGTATATTTTTTGGTAGATTTTCGACCTTTTTGACCTTTTTAAGGAGTCTGGAGCTCGGCTGTCAAGTTTTCAATCTATTAGAAATTACTTGGAGGGTGTTAAACAGACCTCGATTTCAAACATTGATAGAGTTTTTTGAAGCGCCTCGTTTCTCAGCTAATTGTAGATGTCTGAAATATGCCAATTTTTTGACCAATTTTCGTACTGACAGCGTGAAAA</canonical>
            <polymorphic>TGCGTTATCAGTACTCAAAAACAAGCACGCCTAGAATTTTCCCAAACCTATGCAGAAAATATGTATTAGCCATAGCAAAAACTATCTCGGAACGCTGTCAAACTGCAAATTGGTGTAGACACTCAAGTTGTGTGACTGGCATACAGGCATACAGATCAGAAAGTGCGATTCCTCTTCTTTTTCTTTTTTTTTCAATTTTTTTCTTACCTCTATTCCGAGTAGTGAAAGTCTTGTTTGCGTGCGTTTGTGCCACCATCATCTCCCACCAACCGGGGTTAATATTTGCAATGGTATTTACCCGAAGGAGACACGACTTAGAGAGTTTGAGACCGTCATTCATTCTTTTTGCCCCGTCCGATTTTCTCATTATCTTCGTTGATTTTATGATTACCACTGTACTTTTTCAGGAATCAGGAAAAATGAATTTCGAATTTTTGCGGACGCTGCACGGCTTCATCAATTTCATCCAAGTCTTGTTCGGATTCGCTGCTCTTTTTGCRTGCTCTTTCATCTGGAGGGATACTAATCTCTATTTTCAGTTTGTTTATAATGTGAGTTATAGTTATAGCTAATTTTTAAATTCAAAATTTATAGTTTTCATTAAAAACCGTTTTCAGGGATTTGGATGGCAAACTCTAGTTTTGGCAATATTGTTTTTCACTTGGATTTTTGCTGTAATGGTATTCCTGTCAAACCTCTTCGACAAAGATGTTGTTGGAACTATTGGAAAAATGAAGGTGAATTTAATAAATTACAGTCCCGGTCAATAAGATCTACAACTGTATATTTTTTGGTAGATTTTCGACCTTTTTGACCTTTTTAAGGAGTCTGGAGCTCGGCTGTCAAGTTTTCAATCTATTAGAAATTACTTGGAGGGTGTTAAACAGACCTCGATTTCAAACATTGATAGAGTTTTTTGAAGCGCCTCGTTTCTCAGCTAATTGTAGATGTCTGAAATATGCCAATTTTTTGACCAATTTTCGTACTGACAGCGTGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>504 332 164</canonical_bands>
                <polymorphic_bands>836 164</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>504 332 164</canonical_bands>
                <polymorphic_bands>836 164</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>139 117 106 88 83 80 59 55 54 52 45 31 27 17 13 11 8 6 4 3 2</canonical_bands>
                <polymorphic_bands>139 117 106 106 88 83 80 59 55 45 31 27 17 13 11 8 6 4 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACTGTACTTTTTCAGGAATC</pcr_primer_p1>
		<pcr_primer_p2>ACTAGAGTTTGCCATCCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCACTGTACTTTTTCAGGAATCAGGAAAAATGAATTTCGAATTTTTGCGGACGCTGCACGGCTTCATCAATTTCATCCAAGTCTTGTTCGGATTCGCTGCTCTTTTTGCGTGCTCTTTCATCTGGAGGGATACTAATCTCTATTTTCAGTTTGTTTATAATGTGAGTTATAGTTATAGCTAATTTTTAAATTCAAAATTTATAGTTTTCATTAAAAACCGTTTTCAGGGATTTGGATGGCAAACTCTAGT</canonical_amplicon>
		<polymorphic_amplicon>CCACTGTACTTTTTCAGGAATCAGGAAAAATGAATTTCGAATTTTTGCGGACGCTGCACGGCTTCATCAATTTCATCCAAGTCTTGTTCGGATTCGCTGCTCTTTTTGCRTGCTCTTTCATCTGGAGGGATACTAATCTCTATTTTCAGTTTGTTTATAATGTGAGTTATAGTTATAGCTAATTTTTAAATTCAAAATTTATAGTTTTCATTAAAAACCGTTTTCAGGGATTTGGATGGCAAACTCTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2619</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1498137</contig_pos>
        <strand>+</strand>
        <context>CTGAATTTTA[C/T]TGTTCCTTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATATCACTTCCTCCAGGAGGCTTTGGACCTTCCCTTCCAGCTGAATTTTA</left_flank>
        <right_flank>TGTTCCTTTAAGAGATATCGTTAATTGGTATCGTGTAAAAATGATTTTCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTCGCAGTCCGAAAGTTCTCTCCCATCACAACTCAATGAAGAGTTTACGATCAGTACGAAGCCAGAAAAGTATGCGCTCGTTGAAAAGTCAGAAGAGTACGCAGAGCATTCGGATATTCAATCATCACCATGACACCTACCAGACTTGTTTTGGATTTATGCATGTTAAGGTAAGTCGCCGATTTATCAAATTAAATAATTCTTCAATTAACTTGTAATTGATATCAATATCAATTGAGTTTTCCTCATAAATCAAGTTCATCGGTTTAGGAAATAAATGGATTAAGTTTAAACGTAATTCTTGTTTTTCTATTGTTTATTTCTTTAAGTTTTTTTCAAAATGTATTAAAATTTCATGAAAAAAAAAATGTATTTCGCTATTCGCAAGTTTTAATTTCGATAGAAAAGACGTTGACTACACTTGAGAAAATTTTGGTTGATTCTAATATATCACTTCCTCCAGGAGGCTTTGGACCTTCCCTTCCAGCTGAATTTTACTGTTCCTTTAAGAGATATCGTTAATTGGTATCGTGTAAAAATGATTTTCATAACATCTTCAACATTTTGAAAGTTTTTGGATCATTGTTGTTCTCCCAGTAACCGATATAATTGAGCTCAAAGGGCACGTATAGAGAAAAATTTATAGCCTCTAAATGAATTTTCGACCGCGAAAATTATTGCCATTAGGTCAAGAAAAATAATTCAAACCAAAAATTAGCAGGTAATTTTTGATAGTTCTTCTCTATATCTCATTCGAAATTTTGTGAAACTTTCAAATACCAGTTGCTAGATGGTGATATCCTTTTGTCGAAACAAATCACGAGTTCATTTAAATGCTGATCGATTTCAACTGTGGCTTGTTAGGGTTCATTATTAAAATAAATTAACTCCGAAATACTTTCCCATTTTCAGATTGCCACCTGTTCCATTGGTTTCTTTGCTTTACTCGGAGTTTGTCTAACTTTGGTGTACTGTGTTTTCACGTCACAAGAGGTAAC</canonical>
            <polymorphic>TCCTCGCAGTCCGAAAGTTCTCTCCCATCACAACTCAATGAAGAGTTTACGATCAGTACGAAGCCAGAAAAGTATGCGCTCGTTGAAAAGTCAGAAGAGTACGCAGAGCATTCGGATATTCAATCATCACCATGACACCTACCAGACTTGTTTTGGATTTATGCATGTTAAGGTAAGTCGCCGATTTATCAAATTAAATAATTCTTCAATTAACTTGTAATTGATATCAATATCAATTGAGTTTTCCTCATAAATCAAGTTCATCGGTTTAGGAAATAAATGGATTAAGTTTAAACGTAATTCTTGTTTTTCTATTGTTTATTTCTTTAAGTTTTTTTCAAAATGTATTAAAATTTCATGAAAAAAAAAATGTATTTCGCTATTCGCAAGTTTTAATTTCGATAGAAAAGACGTTGACTACACTTGAGAAAATTTTGGTTGATTCTAATATATCACTTCCTCCAGGAGGCTTTGGACCTTCCCTTCCAGCTGAATTTTAYTGTTCCTTTAAGAGATATCGTTAATTGGTATCGTGTAAAAATGATTTTCATAACATCTTCAACATTTTGAAAGTTTTTGGATCATTGTTGTTCTCCCAGTAACCGATATAATTGAGCTCAAAGGGCACGTATAGAGAAAAATTTATAGCCTCTAAATGAATTTTCGACCGCGAAAATTATTGCCATTAGGTCAAGAAAAATAATTCAAACCAAAAATTAGCAGGTAATTTTTGATAGTTCTTCTCTATATCTCATTCGAAATTTTGTGAAACTTTCAAATACCAGTTGCTAGATGGTGATATCCTTTTGTCGAAACAAATCACGAGTTCATTTAAATGCTGATCGATTTCAACTGTGGCTTGTTAGGGTTCATTATTAAAATAAATTAACTCCGAAATACTTTCCCATTTTCAGATTGCCACCTGTTCCATTGGTTTCTTTGCTTTACTCGGAGTTTGTCTAACTTTGGTGTACTGTGTTTTCACGTCACAAGAGGTAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 353 121 25</canonical_bands>
                <polymorphic_bands>854 121 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTATTCGCAAGTTTTAATTTC</pcr_primer_p1>
		<pcr_primer_p2>TGAGCTCAATTATATCGGTTACT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GCTATTCGCAAGTTTTAATTTCGATAGAAAAGACGTTGACTACACTTGAGAAAATTTTGGTTGATTCTAATATATCACTTCCTCCAGGAGGCTTTGGACCTTCCCTTCCAGCTGAATTTTACTGTTCCTTTAAGAGATATCGTTAATTGGTATCGTGTAAAAATGATTTTCATAACATCTTCAACATTTTGAAAGTTTTTGGATCATTGTTGTTCTCCCAGTAACCGATATAATTGAGCTCA</canonical_amplicon>
		<polymorphic_amplicon>GCTATTCGCAAGTTTTAATTTCGATAGAAAAGACGTTGACTACACTTGAGAAAATTTTGGTTGATTCTAATATATCACTTCCTCCAGGAGGCTTTGGACCTTCCCTTCCAGCTGAATTTTAYTGTTCCTTTAAGAGATATCGTTAATTGGTATCGTGTAAAAATGATTTTCATAACATCTTCAACATTTTGAAAGTTTTTGGATCATTGTTGTTCTCCCAGTAACCGATATAATTGAGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2620</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1498159</contig_pos>
        <strand>+</strand>
        <context>GAGATATCGT[A/T]AATTGGTATC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGGACCTTCCCTTCCAGCTGAATTTTACTGTTCCTTTAAGAGATATCGT</left_flank>
        <right_flank>AATTGGTATCGTGTAAAAATGATTTTCATAACATCTTCAACATTTTGAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCCATCACAACTCAATGAAGAGTTTACGATCAGTACGAAGCCAGAAAAGTATGCGCTCGTTGAAAAGTCAGAAGAGTACGCAGAGCATTCGGATATTCAATCATCACCATGACACCTACCAGACTTGTTTTGGATTTATGCATGTTAAGGTAAGTCGCCGATTTATCAAATTAAATAATTCTTCAATTAACTTGTAATTGATATCAATATCAATTGAGTTTTCCTCATAAATCAAGTTCATCGGTTTAGGAAATAAATGGATTAAGTTTAAACGTAATTCTTGTTTTTCTATTGTTTATTTCTTTAAGTTTTTTTCAAAATGTATTAAAATTTCATGAAAAAAAAAATGTATTTCGCTATTCGCAAGTTTTAATTTCGATAGAAAAGACGTTGACTACACTTGAGAAAATTTTGGTTGATTCTAATATATCACTTCCTCCAGGAGGCTTTGGACCTTCCCTTCCAGCTGAATTTTACTGTTCCTTTAAGAGATATCGTTAATTGGTATCGTGTAAAAATGATTTTCATAACATCTTCAACATTTTGAAAGTTTTTGGATCATTGTTGTTCTCCCAGTAACCGATATAATTGAGCTCAAAGGGCACGTATAGAGAAAAATTTATAGCCTCTAAATGAATTTTCGACCGCGAAAATTATTGCCATTAGGTCAAGAAAAATAATTCAAACCAAAAATTAGCAGGTAATTTTTGATAGTTCTTCTCTATATCTCATTCGAAATTTTGTGAAACTTTCAAATACCAGTTGCTAGATGGTGATATCCTTTTGTCGAAACAAATCACGAGTTCATTTAAATGCTGATCGATTTCAACTGTGGCTTGTTAGGGTTCATTATTAAAATAAATTAACTCCGAAATACTTTCCCATTTTCAGATTGCCACCTGTTCCATTGGTTTCTTTGCTTTACTCGGAGTTTGTCTAACTTTGGTGTACTGTGTTTTCACGTCACAAGAGGTAACCTTTATTTTTGAATGTTTTAAA</canonical>
            <polymorphic>TCCCATCACAACTCAATGAAGAGTTTACGATCAGTACGAAGCCAGAAAAGTATGCGCTCGTTGAAAAGTCAGAAGAGTACGCAGAGCATTCGGATATTCAATCATCACCATGACACCTACCAGACTTGTTTTGGATTTATGCATGTTAAGGTAAGTCGCCGATTTATCAAATTAAATAATTCTTCAATTAACTTGTAATTGATATCAATATCAATTGAGTTTTCCTCATAAATCAAGTTCATCGGTTTAGGAAATAAATGGATTAAGTTTAAACGTAATTCTTGTTTTTCTATTGTTTATTTCTTTAAGTTTTTTTCAAAATGTATTAAAATTTCATGAAAAAAAAAATGTATTTCGCTATTCGCAAGTTTTAATTTCGATAGAAAAGACGTTGACTACACTTGAGAAAATTTTGGTTGATTCTAATATATCACTTCCTCCAGGAGGCTTTGGACCTTCCCTTCCAGCTGAATTTTACTGTTCCTTTAAGAGATATCGTWAATTGGTATCGTGTAAAAATGATTTTCATAACATCTTCAACATTTTGAAAGTTTTTGGATCATTGTTGTTCTCCCAGTAACCGATATAATTGAGCTCAAAGGGCACGTATAGAGAAAAATTTATAGCCTCTAAATGAATTTTCGACCGCGAAAATTATTGCCATTAGGTCAAGAAAAATAATTCAAACCAAAAATTAGCAGGTAATTTTTGATAGTTCTTCTCTATATCTCATTCGAAATTTTGTGAAACTTTCAAATACCAGTTGCTAGATGGTGATATCCTTTTGTCGAAACAAATCACGAGTTCATTTAAATGCTGATCGATTTCAACTGTGGCTTGTTAGGGTTCATTATTAAAATAAATTAACTCCGAAATACTTTCCCATTTTCAGATTGCCACCTGTTCCATTGGTTTCTTTGCTTTACTCGGAGTTTGTCTAACTTTGGTGTACTGTGTTTTCACGTCACAAGAGGTAACCTTTATTTTTGAATGTTTTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>311 146 132 115 75 45 44 36 26 21 16 13 10 6 4</canonical_bands>
                <polymorphic_bands>324 146 132 115 75 45 44 36 26 21 16 10 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTATTCGCAAGTTTTAATTTC</pcr_primer_p1>
		<pcr_primer_p2>TGAGCTCAATTATATCGGTTACT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GCTATTCGCAAGTTTTAATTTCGATAGAAAAGACGTTGACTACACTTGAGAAAATTTTGGTTGATTCTAATATATCACTTCCTCCAGGAGGCTTTGGACCTTCCCTTCCAGCTGAATTTTACTGTTCCTTTAAGAGATATCGTTAATTGGTATCGTGTAAAAATGATTTTCATAACATCTTCAACATTTTGAAAGTTTTTGGATCATTGTTGTTCTCCCAGTAACCGATATAATTGAGCTCA</canonical_amplicon>
		<polymorphic_amplicon>GCTATTCGCAAGTTTTAATTTCGATAGAAAAGACGTTGACTACACTTGAGAAAATTTTGGTTGATTCTAATATATCACTTCCTCCAGGAGGCTTTGGACCTTCCCTTCCAGCTGAATTTTACTGTTCCTTTAAGAGATATCGTWAATTGGTATCGTGTAAAAATGATTTTCATAACATCTTCAACATTTTGAAAGTTTTTGGATCATTGTTGTTCTCCCAGTAACCGATATAATTGAGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2621</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1500634</contig_pos>
        <strand>+</strand>
        <context>TGGCCGAGAA[A/C]GGCCAAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACTGTGGCACAGATAAAAATATTTACCGTCTTCACAGAATGGCCGAGAA</left_flank>
        <right_flank>GGCCAAAAATATTCTGTGGTTTGATATTGTATCCGGTGAATCATTTTATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAGAGTCATACAGAAAAATGTGATGATTACAGTATACAAAAAATCCGACAATCGTGGCATGTCTGAAAAAATGGAATTCAAAACAAGTTTTATACGCTCAACAATACAACAATAACTGATGGAGTACAAAAGAAGTAGGCGGAATTTTGAAAAAAATATATATTCGGAGGCAAGCAGCTGTTTAATATTTGCATATAAAACCCGTATATGGCAAAACTTCAAAAACATAAATTTTCAAATAAAAGTTCAATTGCCTTTAAAAATTCTGAAAGAGATTCTGGGAGACATTAATGGAACAACCCAATATGAGAGAAAAATGTGTTTATTTATAGGACATCTTGACCTCAAAGAAACCAAACAACCACAGAAACTAGAAAAAGCTGATAAGAGAGCTTACGTTGACCGGTCAAGAACAAGTATAAAATTCAAAAATAGCTGAAATGTTTTGAACTGTGGCACAGATAAAAATATTTACCGTCTTCACAGAATGGCCGAGAACGGCCAAAAATATTCTGTGGTTTGATATTGTATCCGGTGAATCATTTTATTGTTCATGACTCAATTTGGAAAAAAAAATTATTGATTTCAAAGAACGGCTGTTTAAATTCAAAAAACCAACTTCTGTTTTTTTTCTACCATGAAAAAAAAATTGAAGAGTACATCAAGCTGGTATGATTATTTGATCAAACTCATATTTGCTCTTCGTACTAAATTCTTTACTTCCAACATACACATTTCGTCCTGTTTTGTGTAGAGTTTAACAATAAATTACTCGATTTATAAAAAAACTTTCAATAGAATAAAATAAAACATTTCGAAAAAAGGACACCTGGACAAACATGAAAAATGAGACTAACTCTGAGGAATAAAGCTCAAAAATAACTGGTATGAAGAGAGGTAACTATGGAGCTATCGCCAAAAGTTGAACAATGTTTGGTTTCAAGAATTTGTTTCCCGCAATTTTAAAGAACAAGATAAGGAGGTGAAGGTGAAAATAGG</canonical>
            <polymorphic>TAAGAGTCATACAGAAAAATGTGATGATTACAGTATACAAAAAATCCGACAATCGTGGCATGTCTGAAAAAATGGAATTCAAAACAAGTTTTATACGCTCAACAATACAACAATAACTGATGGAGTACAAAAGAAGTAGGCGGAATTTTGAAAAAAATATATATTCGGAGGCAAGCAGCTGTTTAATATTTGCATATAAAACCCGTATATGGCAAAACTTCAAAAACATAAATTTTCAAATAAAAGTTCAATTGCCTTTAAAAATTCTGAAAGAGATTCTGGGAGACATTAATGGAACAACCCAATATGAGAGAAAAATGTGTTTATTTATAGGACATCTTGACCTCAAAGAAACCAAACAACCACAGAAACTAGAAAAAGCTGATAAGAGAGCTTACGTTGACCGGTCAAGAACAAGTATAAAATTCAAAAATAGCTGAAATGTTTTGAACTGTGGCACAGATAAAAATATTTACCGTCTTCACAGAATGGCCGAGAAMGGCCAAAAATATTCTGTGGTTTGATATTGTATCCGGTGAATCATTTTATTGTTCATGACTCAATTTGGAAAAAAAAATTATTGATTTCAAAGAACGGCTGTTTAAATTCAAAAAACCAACTTCTGTTTTTTTTCTACCATGAAAAAAAAATTGAAGAGTACATCAAGCTGGTATGATTATTTGATCAAACTCATATTTGCTCTTCGTACTAAATTCTTTACTTCCAACATACACATTTCGTCCTGTTTTGTGTAGAGTTTAACAATAAATTACTCGATTTATAAAAAAACTTTCAATAGAATAAAATAAAACATTTCGAAAAAAGGACACCTGGACAAACATGAAAAATGAGACTAACTCTGAGGAATAAAGCTCAAAAATAACTGGTATGAAGAGAGGTAACTATGGAGCTATCGCCAAAAGTTGAACAATGTTTGGTTTCAAGAATTTGTTTCCCGCAATTTTAAAGAACAAGATAAGGAGGTGAAGGTGAAAATAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 490 10</canonical_bands>
                <polymorphic_bands>510 490</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATAGCTGAAATGTTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>ATCATACCAGCTTGATGTACTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAATAGCTGAAATGTTTTGAACTGTGGCACAGATAAAAATATTTACCGTCTTCACAGAATGGCCGAGAACGGCCAAAAATATTCTGTGGTTTGATATTGTATCCGGTGAATCATTTTATTGTTCATGACTCAATTTGGAAAAAAAAATTATTGATTTCAAAGAACGGCTGTTTAAATTCAAAAAACCAACTTCTGTTTTTTTTCTACCATGAAAAAAAAATTGAAGAGTACATCAAGCTGGTATGAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATAGCTGAAATGTTTTGAACTGTGGCACAGATAAAAATATTTACCGTCTTCACAGAATGGCCGAGAAMGGCCAAAAATATTCTGTGGTTTGATATTGTATCCGGTGAATCATTTTATTGTTCATGACTCAATTTGGAAAAAAAAATTATTGATTTCAAAGAACGGCTGTTTAAATTCAAAAAACCAACTTCTGTTTTTTTTCTACCATGAAAAAAAAATTGAAGAGTACATCAAGCTGGTATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2622</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1554445</contig_pos>
        <strand>+</strand>
        <context>CAATTGCTTA[A/T]CACTTGACCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCTTCCAGCCGAATGACCATTCGAACTAGTATTAGTAGCCAATTGCTTA</left_flank>
        <right_flank>CACTTGACCTCTGCGTCTCTTCTAGATAGATAGGGCTTTGCAAATTCCGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTCCATGCACTTTTTAGATTAATCTCTAAAGAAGAGCTGACACACTGTTATTCTCCGATATCACACTTGAATTCATAGATTATGTTGTTTTGTACTTAATGGAATAACAACGTGACTAACTCTACACTGATCGCAGAGTCTCTGAAATCACTACATGTTTTCTACTAGCGTTGGCTGATTAAGAGATTTTGTTTTGAGGAACGTGTATTCAATATATCTGAAGAGGGGCAAAATTTTAAGCTAGCCGATCTCATAAACATGATGATCGTTTCGTATTCTAGAATCTTCCAGATATTTTTGAATGAAACTTTAATATCTATCTTTCTCTTTTGAATTTCTTTTGAATTCCAATTTCCACTTTTCTCTAGTTTTGAGTCCATTTTTACTCCTCCTAAAATTCATTTCTAATTTACCCGACAGTTTCACGTGTGTGACCTTCAATGGCTTTTCTTCCAGCCGAATGACCATTCGAACTAGTATTAGTAGCCAATTGCTTAACACTTGACCTCTGCGTCTCTTCTAGATAGATAGGGCTTTGCAAATTCCGTCTATTTTGATTTGTGTTTCACACCTTGAAACCTGCTGTCACATGAGGAAAGCGCGCAATGAATTTCAGAAAAGGAAAGAGAAGTCAGACTATGTGTAGCTTTAGGTACTGTTTTGTCTAGTTCACGTTTTCGAGAACCTTTTTTCTGCCGACTAGACTTCATCCTAGTCCCACCCACACTGGGAGGAGAGTAATCAAGTACGAGCCCCCGGAGAGAGGGTGTTGTTTCCTGATTAATCAGAAGGGGAGGAAAAAAGTTGTTATTCCTATCAGTTTGTGGGACCCAAACAAAATAATTGAAAAAAATGAGAGTTTTTGGTGTTCTATTTTCTTTTTCCCTGTCGAATTTCACTGAATATCCTAGTACATAGAACACACTTTCGGTGCCCTTCGTGTCGGATTGAGTATATAAACTCCTAATCTTTTGTGTTCTGCCTCTAAATCTACCGTT</canonical>
            <polymorphic>CTTTCCATGCACTTTTTAGATTAATCTCTAAAGAAGAGCTGACACACTGTTATTCTCCGATATCACACTTGAATTCATAGATTATGTTGTTTTGTACTTAATGGAATAACAACGTGACTAACTCTACACTGATCGCAGAGTCTCTGAAATCACTACATGTTTTCTACTAGCGTTGGCTGATTAAGAGATTTTGTTTTGAGGAACGTGTATTCAATATATCTGAAGAGGGGCAAAATTTTAAGCTAGCCGATCTCATAAACATGATGATCGTTTCGTATTCTAGAATCTTCCAGATATTTTTGAATGAAACTTTAATATCTATCTTTCTCTTTTGAATTTCTTTTGAATTCCAATTTCCACTTTTCTCTAGTTTTGAGTCCATTTTTACTCCTCCTAAAATTCATTTCTAATTTACCCGACAGTTTCACGTGTGTGACCTTCAATGGCTTTTCTTCCAGCCGAATGACCATTCGAACTAGTATTAGTAGCCAATTGCTTAWCACTTGACCTCTGCGTCTCTTCTAGATAGATAGGGCTTTGCAAATTCCGTCTATTTTGATTTGTGTTTCACACCTTGAAACCTGCTGTCACATGAGGAAAGCGCGCAATGAATTTCAGAAAAGGAAAGAGAAGTCAGACTATGTGTAGCTTTAGGTACTGTTTTGTCTAGTTCACGTTTTCGAGAACCTTTTTTCTGCCGACTAGACTTCATCCTAGTCCCACCCACACTGGGAGGAGAGTAATCAAGTACGAGCCCCCGGAGAGAGGGTGTTGTTTCCTGATTAATCAGAAGGGGAGGAAAAAAGTTGTTATTCCTATCAGTTTGTGGGACCCAAACAAAATAATTGAAAAAAATGAGAGTTTTTGGTGTTCTATTTTCTTTTTCCCTGTCGAATTTCACTGAATATCCTAGTACATAGAACACACTTTCGGTGCCCTTCGTGTCGGATTGAGTATATAAACTCCTAATCTTTTGTGTTCTGCCTCTAAATCTACCGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>286 217 185 83 77 74 57 21</canonical_bands>
                <polymorphic_bands>471 217 83 77 74 57 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCATTTTTACTCCTCCTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTCCTTTTCTGAAATTCATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCATTTTTACTCCTCCTAAAATTCATTTCTAATTTACCCGACAGTTTCACGTGTGTGACCTTCAATGGCTTTTCTTCCAGCCGAATGACCATTCGAACTAGTATTAGTAGCCAATTGCTTAACACTTGACCTCTGCGTCTCTTCTAGATAGATAGGGCTTTGCAAATTCCGTCTATTTTGATTTGTGTTTCACACCTTGAAACCTGCTGTCACATGAGGAAAGCGCGCAATGAATTTCAGAAAAGGAAA</canonical_amplicon>
		<polymorphic_amplicon>TCCATTTTTACTCCTCCTAAAATTCATTTCTAATTTACCCGACAGTTTCACGTGTGTGACCTTCAATGGCTTTTCTTCCAGCCGAATGACCATTCGAACTAGTATTAGTAGCCAATTGCTTAWCACTTGACCTCTGCGTCTCTTCTAGATAGATAGGGCTTTGCAAATTCCGTCTATTTTGATTTGTGTTTCACACCTTGAAACCTGCTGTCACATGAGGAAAGCGCGCAATGAATTTCAGAAAAGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2623</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1554472</contig_pos>
        <strand>+</strand>
        <context>CTCTTCTAGA[C/T]AGATAGGGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGTATTAGTAGCCAATTGCTTAACACTTGACCTCTGCGTCTCTTCTAGA</left_flank>
        <right_flank>AGATAGGGCTTTGCAAATTCCGTCTATTTTGATTTGTGTTTCACACCTTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAAAGAAGAGCTGACACACTGTTATTCTCCGATATCACACTTGAATTCATAGATTATGTTGTTTTGTACTTAATGGAATAACAACGTGACTAACTCTACACTGATCGCAGAGTCTCTGAAATCACTACATGTTTTCTACTAGCGTTGGCTGATTAAGAGATTTTGTTTTGAGGAACGTGTATTCAATATATCTGAAGAGGGGCAAAATTTTAAGCTAGCCGATCTCATAAACATGATGATCGTTTCGTATTCTAGAATCTTCCAGATATTTTTGAATGAAACTTTAATATCTATCTTTCTCTTTTGAATTTCTTTTGAATTCCAATTTCCACTTTTCTCTAGTTTTGAGTCCATTTTTACTCCTCCTAAAATTCATTTCTAATTTACCCGACAGTTTCACGTGTGTGACCTTCAATGGCTTTTCTTCCAGCCGAATGACCATTCGAACTAGTATTAGTAGCCAATTGCTTAACACTTGACCTCTGCGTCTCTTCTAGATAGATAGGGCTTTGCAAATTCCGTCTATTTTGATTTGTGTTTCACACCTTGAAACCTGCTGTCACATGAGGAAAGCGCGCAATGAATTTCAGAAAAGGAAAGAGAAGTCAGACTATGTGTAGCTTTAGGTACTGTTTTGTCTAGTTCACGTTTTCGAGAACCTTTTTTCTGCCGACTAGACTTCATCCTAGTCCCACCCACACTGGGAGGAGAGTAATCAAGTACGAGCCCCCGGAGAGAGGGTGTTGTTTCCTGATTAATCAGAAGGGGAGGAAAAAAGTTGTTATTCCTATCAGTTTGTGGGACCCAAACAAAATAATTGAAAAAAATGAGAGTTTTTGGTGTTCTATTTTCTTTTTCCCTGTCGAATTTCACTGAATATCCTAGTACATAGAACACACTTTCGGTGCCCTTCGTGTCGGATTGAGTATATAAACTCCTAATCTTTTGTGTTCTGCCTCTAAATCTACCGTTCCGTTTTTGCAAAGAACGCTTGTCAGT</canonical>
            <polymorphic>CTAAAGAAGAGCTGACACACTGTTATTCTCCGATATCACACTTGAATTCATAGATTATGTTGTTTTGTACTTAATGGAATAACAACGTGACTAACTCTACACTGATCGCAGAGTCTCTGAAATCACTACATGTTTTCTACTAGCGTTGGCTGATTAAGAGATTTTGTTTTGAGGAACGTGTATTCAATATATCTGAAGAGGGGCAAAATTTTAAGCTAGCCGATCTCATAAACATGATGATCGTTTCGTATTCTAGAATCTTCCAGATATTTTTGAATGAAACTTTAATATCTATCTTTCTCTTTTGAATTTCTTTTGAATTCCAATTTCCACTTTTCTCTAGTTTTGAGTCCATTTTTACTCCTCCTAAAATTCATTTCTAATTTACCCGACAGTTTCACGTGTGTGACCTTCAATGGCTTTTCTTCCAGCCGAATGACCATTCGAACTAGTATTAGTAGCCAATTGCTTAACACTTGACCTCTGCGTCTCTTCTAGAYAGATAGGGCTTTGCAAATTCCGTCTATTTTGATTTGTGTTTCACACCTTGAAACCTGCTGTCACATGAGGAAAGCGCGCAATGAATTTCAGAAAAGGAAAGAGAAGTCAGACTATGTGTAGCTTTAGGTACTGTTTTGTCTAGTTCACGTTTTCGAGAACCTTTTTTCTGCCGACTAGACTTCATCCTAGTCCCACCCACACTGGGAGGAGAGTAATCAAGTACGAGCCCCCGGAGAGAGGGTGTTGTTTCCTGATTAATCAGAAGGGGAGGAAAAAAGTTGTTATTCCTATCAGTTTGTGGGACCCAAACAAAATAATTGAAAAAAATGAGAGTTTTTGGTGTTCTATTTTCTTTTTCCCTGTCGAATTTCACTGAATATCCTAGTACATAGAACACACTTTCGGTGCCCTTCGTGTCGGATTGAGTATATAAACTCCTAATCTTTTGTGTTCTGCCTCTAAATCTACCGTTCCGTTTTTGCAAAGAACGCTTGTCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCATTTTTACTCCTCCTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTCCTTTTCTGAAATTCATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCATTTTTACTCCTCCTAAAATTCATTTCTAATTTACCCGACAGTTTCACGTGTGTGACCTTCAATGGCTTTTCTTCCAGCCGAATGACCATTCGAACTAGTATTAGTAGCCAATTGCTTAACACTTGACCTCTGCGTCTCTTCTAGATAGATAGGGCTTTGCAAATTCCGTCTATTTTGATTTGTGTTTCACACCTTGAAACCTGCTGTCACATGAGGAAAGCGCGCAATGAATTTCAGAAAAGGAAA</canonical_amplicon>
		<polymorphic_amplicon>TCCATTTTTACTCCTCCTAAAATTCATTTCTAATTTACCCGACAGTTTCACGTGTGTGACCTTCAATGGCTTTTCTTCCAGCCGAATGACCATTCGAACTAGTATTAGTAGCCAATTGCTTAACACTTGACCTCTGCGTCTCTTCTAGAYAGATAGGGCTTTGCAAATTCCGTCTATTTTGATTTGTGTTTCACACCTTGAAACCTGCTGTCACATGAGGAAAGCGCGCAATGAATTTCAGAAAAGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2624</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1557074</contig_pos>
        <strand>+</strand>
        <context>TTTCTATTAA[C/T]ATTTCACTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGCTTGGTGTCTGTAATTTTACCCAAACACCTTGTATAATTTTCTATTAA</left_flank>
        <right_flank>ATTTCACTCCTCAAGCCCCTTTAAACAGAGTTTCACTTCCAAGCTTGTTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTACACTGCCAAACTGAACTACCGCTTTCAATCAACTTTGAAAACTGCTCAATTATTTTCTATTTCATAGTCCATCCATACCTCTTCAAAGTCCTCTTCCGCTTTCAGTACCTCTGTTGTTGTCCGTAAGAAAATTCTAGAGCACCACTGCCCGCAGAGTTCTGTTTCTTATCTGATATACCGTAGTTTTGTTTATTTATCAGCAACAACACCACAAACCAGATTAACTACAAGAACATTTACACTTGATGGAATTCCTACAACAGCTCTCCCGAACAACATATCTACCTAATTAACTAGATTTCTCTCGATTTGGCATTATTTACATGTCCAAAGGTGTGGGATTTGAAATTCATCAAAGTCCACAATTACTTTAAATTTATTTTCCATGGAAATCGAATGAGCCGTGAGAAGTCGTCCTTATCGTTTATGAGGAAAAATTAGAGAACGCTTGGTGTCTGTAATTTTACCCAAACACCTTGTATAATTTTCTATTAATATTTCACTCCTCAAGCCCCTTTAAACAGAGTTTCACTTCCAAGCTTGTTCTTCTCAGGTTTTGTTTTCCTAGAATCGCAGTTTTCTGGAAGTTTCGTTCGCGAGTAAGAAGTTAATTCCTTCTATCAGCAGCAGAACAATGTTTTTCGGTATTATCAGCTCGCTTTGCTACTGATAAACATGCCTCAAAACAGAGATCGGCTGCCGAATCCCACAAGACTTCCAATTCTTGTTATTCAAATACTGCTGCACTTGAGCTGTTCTGATTCAGTAAAAACAAAGAAAAAAGTAATTTATTTGATTTTTTTTCATTTGGATAAACCTGTAACATGAAGTCAATTAATAAAACTGAAACCACTTGGTTTTCTTTTTCAAAATTCACAGGGGAGAGGAAAATAAGGAAATAAATAAAATAATATTAATCTGCGTCCCGGTTATATCAAATACTGTTTTTAGCAATCTTTAGTTTTTCGTTCGAAGTCCTGGGAACTCAAAGTGTGA</canonical>
            <polymorphic>TTTACACTGCCAAACTGAACTACCGCTTTCAATCAACTTTGAAAACTGCTCAATTATTTTCTATTTCATAGTCCATCCATACCTCTTCAAAGTCCTCTTCCGCTTTCAGTACCTCTGTTGTTGTCCGTAAGAAAATTCTAGAGCACCACTGCCCGCAGAGTTCTGTTTCTTATCTGATATACCGTAGTTTTGTTTATTTATCAGCAACAACACCACAAACCAGATTAACTACAAGAACATTTACACTTGATGGAATTCCTACAACAGCTCTCCCGAACAACATATCTACCTAATTAACTAGATTTCTCTCGATTTGGCATTATTTACATGTCCAAAGGTGTGGGATTTGAAATTCATCAAAGTCCACAATTACTTTAAATTTATTTTCCATGGAAATCGAATGAGCCGTGAGAAGTCGTCCTTATCGTTTATGAGGAAAAATTAGAGAACGCTTGGTGTCTGTAATTTTACCCAAACACCTTGTATAATTTTCTATTAAYATTTCACTCCTCAAGCCCCTTTAAACAGAGTTTCACTTCCAAGCTTGTTCTTCTCAGGTTTTGTTTTCCTAGAATCGCAGTTTTCTGGAAGTTTCGTTCGCGAGTAAGAAGTTAATTCCTTCTATCAGCAGCAGAACAATGTTTTTCGGTATTATCAGCTCGCTTTGCTACTGATAAACATGCCTCAAAACAGAGATCGGCTGCCGAATCCCACAAGACTTCCAATTCTTGTTATTCAAATACTGCTGCACTTGAGCTGTTCTGATTCAGTAAAAACAAAGAAAAAAGTAATTTATTTGATTTTTTTTCATTTGGATAAACCTGTAACATGAAGTCAATTAATAAAACTGAAACCACTTGGTTTTCTTTTTCAAAATTCACAGGGGAGAGGAAAATAAGGAAATAAATAAAATAATATTAATCTGCGTCCCGGTTATATCAAATACTGTTTTTAGCAATCTTTAGTTTTTCGTTCGAAGTCCTGGGAACTCAAAGTGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>496 343 82 79</canonical_bands>
                <polymorphic_bands>839 82 79</polymorphic_bands>
            </assay>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 416 84</canonical_bands>
                <polymorphic_bands>916 84</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAAGTCGTCCTTATCGTTTAT</pcr_primer_p1>
		<pcr_primer_p2>GCTGATAATACCGAAAAACATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGAAGTCGTCCTTATCGTTTATGAGGAAAAATTAGAGAACGCTTGGTGTCTGTAATTTTACCCAAACACCTTGTATAATTTTCTATTAATATTTCACTCCTCAAGCCCCTTTAAACAGAGTTTCACTTCCAAGCTTGTTCTTCTCAGGTTTTGTTTTCCTAGAATCGCAGTTTTCTGGAAGTTTCGTTCGCGAGTAAGAAGTTAATTCCTTCTATCAGCAGCAGAACAATGTTTTTCGGTATTATCAGC</canonical_amplicon>
		<polymorphic_amplicon>GAGAAGTCGTCCTTATCGTTTATGAGGAAAAATTAGAGAACGCTTGGTGTCTGTAATTTTACCCAAACACCTTGTATAATTTTCTATTAAYATTTCACTCCTCAAGCCCCTTTAAACAGAGTTTCACTTCCAAGCTTGTTCTTCTCAGGTTTTGTTTTCCTAGAATCGCAGTTTTCTGGAAGTTTCGTTCGCGAGTAAGAAGTTAATTCCTTCTATCAGCAGCAGAACAATGTTTTTCGGTATTATCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2625</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1556901</contig_pos>
        <strand>+</strand>
        <context>GCATTATTTA[C/T]ATGTCCAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAACATATCTACCTAATTAACTAGATTTCTCTCGATTTGGCATTATTTA</left_flank>
        <right_flank>ATGTCCAAAGGTGTGGGATTTGAAATTCATCAAAGTCCACAATTACTTTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACCAACACACCAGCTGAACTACAAGAGAATTACTAATCGACGAAATTTCAATCATAGCCTATGAAACAGCACTTCTGCCTAAATAAAGGATCTTTTTTTTTGACTCGTAGCTTGTTTCATAAGATATCGTAACTTGTAGAAGATGAACTTTCTCTATTAACCGTACTTTTATTTACACTGCCAAACTGAACTACCGCTTTCAATCAACTTTGAAAACTGCTCAATTATTTTCTATTTCATAGTCCATCCATACCTCTTCAAAGTCCTCTTCCGCTTTCAGTACCTCTGTTGTTGTCCGTAAGAAAATTCTAGAGCACCACTGCCCGCAGAGTTCTGTTTCTTATCTGATATACCGTAGTTTTGTTTATTTATCAGCAACAACACCACAAACCAGATTAACTACAAGAACATTTACACTTGATGGAATTCCTACAACAGCTCTCCCGAACAACATATCTACCTAATTAACTAGATTTCTCTCGATTTGGCATTATTTACATGTCCAAAGGTGTGGGATTTGAAATTCATCAAAGTCCACAATTACTTTAAATTTATTTTCCATGGAAATCGAATGAGCCGTGAGAAGTCGTCCTTATCGTTTATGAGGAAAAATTAGAGAACGCTTGGTGTCTGTAATTTTACCCAAACACCTTGTATAATTTTCTATTAATATTTCACTCCTCAAGCCCCTTTAAACAGAGTTTCACTTCCAAGCTTGTTCTTCTCAGGTTTTGTTTTCCTAGAATCGCAGTTTTCTGGAAGTTTCGTTCGCGAGTAAGAAGTTAATTCCTTCTATCAGCAGCAGAACAATGTTTTTCGGTATTATCAGCTCGCTTTGCTACTGATAAACATGCCTCAAAACAGAGATCGGCTGCCGAATCCCACAAGACTTCCAATTCTTGTTATTCAAATACTGCTGCACTTGAGCTGTTCTGATTCAGTAAAAACAAAGAAAAAAGTAATTTATTTGATTTTTTTTCATTTGGATAAACCTGTAA</canonical>
            <polymorphic>TCACCAACACACCAGCTGAACTACAAGAGAATTACTAATCGACGAAATTTCAATCATAGCCTATGAAACAGCACTTCTGCCTAAATAAAGGATCTTTTTTTTTGACTCGTAGCTTGTTTCATAAGATATCGTAACTTGTAGAAGATGAACTTTCTCTATTAACCGTACTTTTATTTACACTGCCAAACTGAACTACCGCTTTCAATCAACTTTGAAAACTGCTCAATTATTTTCTATTTCATAGTCCATCCATACCTCTTCAAAGTCCTCTTCCGCTTTCAGTACCTCTGTTGTTGTCCGTAAGAAAATTCTAGAGCACCACTGCCCGCAGAGTTCTGTTTCTTATCTGATATACCGTAGTTTTGTTTATTTATCAGCAACAACACCACAAACCAGATTAACTACAAGAACATTTACACTTGATGGAATTCCTACAACAGCTCTCCCGAACAACATATCTACCTAATTAACTAGATTTCTCTCGATTTGGCATTATTTAYATGTCCAAAGGTGTGGGATTTGAAATTCATCAAAGTCCACAATTACTTTAAATTTATTTTCCATGGAAATCGAATGAGCCGTGAGAAGTCGTCCTTATCGTTTATGAGGAAAAATTAGAGAACGCTTGGTGTCTGTAATTTTACCCAAACACCTTGTATAATTTTCTATTAATATTTCACTCCTCAAGCCCCTTTAAACAGAGTTTCACTTCCAAGCTTGTTCTTCTCAGGTTTTGTTTTCCTAGAATCGCAGTTTTCTGGAAGTTTCGTTCGCGAGTAAGAAGTTAATTCCTTCTATCAGCAGCAGAACAATGTTTTTCGGTATTATCAGCTCGCTTTGCTACTGATAAACATGCCTCAAAACAGAGATCGGCTGCCGAATCCCACAAGACTTCCAATTCTTGTTATTCAAATACTGCTGCACTTGAGCTGTTCTGATTCAGTAAAAACAAAGAAAAAAGTAATTTATTTGATTTTTTTTCATTTGGATAAACCTGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>503 352 145</canonical_bands>
                <polymorphic_bands>855 145</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 290 148 62</canonical_bands>
                <polymorphic_bands>562 290 148</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTTTATTTATCAGCAACAACA</pcr_primer_p1>
		<pcr_primer_p2>TTTCCTCATAAACGATAAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGTTTATTTATCAGCAACAACACCACAAACCAGATTAACTACAAGAACATTTACACTTGATGGAATTCCTACAACAGCTCTCCCGAACAACATATCTACCTAATTAACTAGATTTCTCTCGATTTGGCATTATTTACATGTCCAAAGGTGTGGGATTTGAAATTCATCAAAGTCCACAATTACTTTAAATTTATTTTCCATGGAAATCGAATGAGCCGTGAGAAGTCGTCCTTATCGTTTATGAGGAAA</canonical_amplicon>
		<polymorphic_amplicon>TTGTTTATTTATCAGCAACAACACCACAAACCAGATTAACTACAAGAACATTTACACTTGATGGAATTCCTACAACAGCTCTCCCGAACAACATATCTACCTAATTAACTAGATTTCTCTCGATTTGGCATTATTTAYATGTCCAAAGGTGTGGGATTTGAAATTCATCAAAGTCCACAATTACTTTAAATTTATTTTCCATGGAAATCGAATGAGCCGTGAGAAGTCGTCCTTATCGTTTATGAGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2626</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1556700</contig_pos>
        <strand>+</strand>
        <context>TGTTGTTGTC[A/C]GTAAGAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCATACCTCTTCAAAGTCCTCTTCCGCTTTCAGTACCTCTGTTGTTGTC</left_flank>
        <right_flank>GTAAGAAAATTCTAGAGCACCACTGCCCGCAGAGTTCTGTTTCTTATCTG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGAACATTGGGCTAGAAAGTTCAACTCGTCGACGGACTTATATTTTTCATGTTCCCACAGTACCTCCCTCTAAATTACAGTTTTCTATTCATGCTTTAGATAAATTTCTCTCCCGCTTTCACACCTACAGTACCACCATTGTTAGTGTTGAAAAAATTTCATAAAACTGCTACTTTGGATACCGTATCTATCTTCATTTTCACCAACACACCAGCTGAACTACAAGAGAATTACTAATCGACGAAATTTCAATCATAGCCTATGAAACAGCACTTCTGCCTAAATAAAGGATCTTTTTTTTTGACTCGTAGCTTGTTTCATAAGATATCGTAACTTGTAGAAGATGAACTTTCTCTATTAACCGTACTTTTATTTACACTGCCAAACTGAACTACCGCTTTCAATCAACTTTGAAAACTGCTCAATTATTTTCTATTTCATAGTCCATCCATACCTCTTCAAAGTCCTCTTCCGCTTTCAGTACCTCTGTTGTTGTCCGTAAGAAAATTCTAGAGCACCACTGCCCGCAGAGTTCTGTTTCTTATCTGATATACCGTAGTTTTGTTTATTTATCAGCAACAACACCACAAACCAGATTAACTACAAGAACATTTACACTTGATGGAATTCCTACAACAGCTCTCCCGAACAACATATCTACCTAATTAACTAGATTTCTCTCGATTTGGCATTATTTACATGTCCAAAGGTGTGGGATTTGAAATTCATCAAAGTCCACAATTACTTTAAATTTATTTTCCATGGAAATCGAATGAGCCGTGAGAAGTCGTCCTTATCGTTTATGAGGAAAAATTAGAGAACGCTTGGTGTCTGTAATTTTACCCAAACACCTTGTATAATTTTCTATTAATATTTCACTCCTCAAGCCCCTTTAAACAGAGTTTCACTTCCAAGCTTGTTCTTCTCAGGTTTTGTTTTCCTAGAATCGCAGTTTTCTGGAAGTTTCGTTCGCGAGTAAGAAGTTAATTCCTTCTATC</canonical>
            <polymorphic>CTCGAACATTGGGCTAGAAAGTTCAACTCGTCGACGGACTTATATTTTTCATGTTCCCACAGTACCTCCCTCTAAATTACAGTTTTCTATTCATGCTTTAGATAAATTTCTCTCCCGCTTTCACACCTACAGTACCACCATTGTTAGTGTTGAAAAAATTTCATAAAACTGCTACTTTGGATACCGTATCTATCTTCATTTTCACCAACACACCAGCTGAACTACAAGAGAATTACTAATCGACGAAATTTCAATCATAGCCTATGAAACAGCACTTCTGCCTAAATAAAGGATCTTTTTTTTTGACTCGTAGCTTGTTTCATAAGATATCGTAACTTGTAGAAGATGAACTTTCTCTATTAACCGTACTTTTATTTACACTGCCAAACTGAACTACCGCTTTCAATCAACTTTGAAAACTGCTCAATTATTTTCTATTTCATAGTCCATCCATACCTCTTCAAAGTCCTCTTCCGCTTTCAGTACCTCTGTTGTTGTCMGTAAGAAAATTCTAGAGCACCACTGCCCGCAGAGTTCTGTTTCTTATCTGATATACCGTAGTTTTGTTTATTTATCAGCAACAACACCACAAACCAGATTAACTACAAGAACATTTACACTTGATGGAATTCCTACAACAGCTCTCCCGAACAACATATCTACCTAATTAACTAGATTTCTCTCGATTTGGCATTATTTACATGTCCAAAGGTGTGGGATTTGAAATTCATCAAAGTCCACAATTACTTTAAATTTATTTTCCATGGAAATCGAATGAGCCGTGAGAAGTCGTCCTTATCGTTTATGAGGAAAAATTAGAGAACGCTTGGTGTCTGTAATTTTACCCAAACACCTTGTATAATTTTCTATTAATATTTCACTCCTCAAGCCCCTTTAAACAGAGTTTCACTTCCAAGCTTGTTCTTCTCAGGTTTTGTTTTCCTAGAATCGCAGTTTTCTGGAAGTTTCGTTCGCGAGTAAGAAGTTAATTCCTTCTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAACTGCTCAATTATTTTCT</pcr_primer_p1>
		<pcr_primer_p2>GTAGATATGTTGTTCGGGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAAAACTGCTCAATTATTTTCTATTTCATAGTCCATCCATACCTCTTCAAAGTCCTCTTCCGCTTTCAGTACCTCTGTTGTTGTCCGTAAGAAAATTCTAGAGCACCACTGCCCGCAGAGTTCTGTTTCTTATCTGATATACCGTAGTTTTGTTTATTTATCAGCAACAACACCACAAACCAGATTAACTACAAGAACATTTACACTTGATGGAATTCCTACAACAGCTCTCCCGAACAACATATCTAC</canonical_amplicon>
		<polymorphic_amplicon>TGAAAACTGCTCAATTATTTTCTATTTCATAGTCCATCCATACCTCTTCAAAGTCCTCTTCCGCTTTCAGTACCTCTGTTGTTGTCMGTAAGAAAATTCTAGAGCACCACTGCCCGCAGAGTTCTGTTTCTTATCTGATATACCGTAGTTTTGTTTATTTATCAGCAACAACACCACAAACCAGATTAACTACAAGAACATTTACACTTGATGGAATTCCTACAACAGCTCTCCCGAACAACATATCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2627</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1566164</contig_pos>
        <strand>+</strand>
        <context>GTGCACCTTT[C/T]TTTTCGAAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCATTTTTATTATTGTGAACACCACCTGCTTTTCAACAGGTGCACCTTT</left_flank>
        <right_flank>TTTTCGAAACATGTAAATAGTGGAAAATTTACCTGATTCGCTAAAGCAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCAACAAATGAAATGTTTCTCGTGAAATTACTAACAATGTATCGGTTGACAAAACCTTGATATCTATTGAAGGAAATGAGATAATTAAGCATAAAGTGCACGGGAAAAAATTGCTATTTAATAGAGCACTTGAAGTATCATGGTATTGAAAAATATCTCCCACAAAAACTTCTCACCTCTCAAGTCTCGCAGACGCATGAGCAGCGGTGATCTTTTTTGACGGTTTCTCCAATAATTCAGCATCAGTCTTGGCGTGTTTCGTCCTACTCCAGTAAGTCCCTACATACGAGAATAAAATCCCACTGAAGAATCCAGCATTGTCCTCTGAACTCGGATAAAAATGCTCGACACTGTCCAACTCATTTGTCATCACAACTGCCTTCTCATCGTTCTGTGGATCCTAAATTGGATAAATTGACCAATTTACTCTTTGTGTGGTCAGTATTGCCCCATTTTTATTATTGTGAACACCACCTGCTTTTCAACAGGTGCACCTTTCTTTTCGAAACATGTAAATAGTGGAAAATTTACCTGATTCGCTAAAGCAGCTGGTTTTTTATACCGCTCCACATTAATGAATCATTAATCCGTTTGATTAGTTTGGAAAGGTCGAAAAGTCAAGAACTCAAGGTTTTTCTGAGGTATGCTCATTAAGTTAATATATGACTGGTTCTGTGATATAAGTGGTCCATCTTAATCTTGGTTGCTCTTTAATCTAATAGTTTGGCTTCTTGCAGGAACTACGAAAAGCAACTTACTAATGTAACGTTATTGATATTTTCTAATATTTTCAAAAAATGAAAAGCATGCACATCCACCCGAAAAGCTGAAACAGTGGCGCCCCAGCGAACTGTAGATATCACTACCTACTGAACATATCACACTTTTTGGCAGTGTCAAACACGCAACGACGAGCGAAACAAAGCGAGCGTTGATTTTCAATACTCAGATCATTTTGACGTCCACTTTGAAACTATTGAATTTCATCTGGCCTAAAAT</canonical>
            <polymorphic>GTCAACAAATGAAATGTTTCTCGTGAAATTACTAACAATGTATCGGTTGACAAAACCTTGATATCTATTGAAGGAAATGAGATAATTAAGCATAAAGTGCACGGGAAAAAATTGCTATTTAATAGAGCACTTGAAGTATCATGGTATTGAAAAATATCTCCCACAAAAACTTCTCACCTCTCAAGTCTCGCAGACGCATGAGCAGCGGTGATCTTTTTTGACGGTTTCTCCAATAATTCAGCATCAGTCTTGGCGTGTTTCGTCCTACTCCAGTAAGTCCCTACATACGAGAATAAAATCCCACTGAAGAATCCAGCATTGTCCTCTGAACTCGGATAAAAATGCTCGACACTGTCCAACTCATTTGTCATCACAACTGCCTTCTCATCGTTCTGTGGATCCTAAATTGGATAAATTGACCAATTTACTCTTTGTGTGGTCAGTATTGCCCCATTTTTATTATTGTGAACACCACCTGCTTTTCAACAGGTGCACCTTTYTTTTCGAAACATGTAAATAGTGGAAAATTTACCTGATTCGCTAAAGCAGCTGGTTTTTTATACCGCTCCACATTAATGAATCATTAATCCGTTTGATTAGTTTGGAAAGGTCGAAAAGTCAAGAACTCAAGGTTTTTCTGAGGTATGCTCATTAAGTTAATATATGACTGGTTCTGTGATATAAGTGGTCCATCTTAATCTTGGTTGCTCTTTAATCTAATAGTTTGGCTTCTTGCAGGAACTACGAAAAGCAACTTACTAATGTAACGTTATTGATATTTTCTAATATTTTCAAAAAATGAAAAGCATGCACATCCACCCGAAAAGCTGAAACAGTGGCGCCCCAGCGAACTGTAGATATCACTACCTACTGAACATATCACACTTTTTGGCAGTGTCAAACACGCAACGACGAGCGAAACAAAGCGAGCGTTGATTTTCAATACTCAGATCATTTTGACGTCCACTTTGAAACTATTGAATTTCATCTGGCCTAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTATTGCCCCATTTTTATTATT</pcr_primer_p1>
		<pcr_primer_p2>GACCACTTATATCACAGAACCAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGTATTGCCCCATTTTTATTATTGTGAACACCACCTGCTTTTCAACAGGTGCACCTTTCTTTTCGAAACATGTAAATAGTGGAAAATTTACCTGATTCGCTAAAGCAGCTGGTTTTTTATACCGCTCCACATTAATGAATCATTAATCCGTTTGATTAGTTTGGAAAGGTCGAAAAGTCAAGAACTCAAGGTTTTTCTGAGGTATGCTCATTAAGTTAATATATGACTGGTTCTGTGATATAAGTGGTC</canonical_amplicon>
		<polymorphic_amplicon>AGTATTGCCCCATTTTTATTATTGTGAACACCACCTGCTTTTCAACAGGTGCACCTTTYTTTTCGAAACATGTAAATAGTGGAAAATTTACCTGATTCGCTAAAGCAGCTGGTTTTTTATACCGCTCCACATTAATGAATCATTAATCCGTTTGATTAGTTTGGAAAGGTCGAAAAGTCAAGAACTCAAGGTTTTTCTGAGGTATGCTCATTAAGTTAATATATGACTGGTTCTGTGATATAAGTGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2628</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1566702</contig_pos>
        <strand></strand>
        <context>AACCTTCTGG[G/A]TCTCTTTGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCTGGCCTAAAATTTATCTGTAGGCTGCAATTTGTAACCAAACCTTCTGG</left_flank>
        <right_flank>TCTCTTTGAGCATGGTAATTGGAAACCAACTCGAAAAATTATGAATTAGA</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCTAAAGCAGCTGGTTTTTTATACCGCTCCACATTAATGAATCATTAATCCGTTTGATTAGTTTGGAAAGGTCGAAAAGTCAAGAACTCAAGGTTTTTCTGAGGTATGCTCATTAAGTTAATATATGACTGGTTCTGTGATATAAGTGGTCCATCTTAATCTTGGTTGCTCTTTAATCTAATAGTTTGGCTTCTTGCAGGAACTACGAAAAGCAACTTACTAATGTAACGTTATTGATATTTTCTAATATTTTCAAAAAATGAAAAGCATGCACATCCACCCGAAAAGCTGAAACAGTGGCGCCCCAGCGAACTGTAGATATCACTACCTACTGAACATATCACACTTTTTGGCAGTGTCAAACACGCAACGACGAGCGAAACAAAGCGAGCGTTGATTTTCAATACTCAGATCATTTTGACGTCCACTTTGAAACTATTGAATTTCATCTGGCCTAAAATTTATCTGTAGGCTGCAATTTGTAACCAAACCTTCTGGGTCTCTTTGAGCATGGTAATTGGAAACCAACTCGAAAAATTATGAATTAGAGTTTTTTTATTTATCAATAATCATTTATCAATATTGGCTCCCACTAATTTTCAAATTCTCACTAACCTCTACTTCACTTTTTGGAACGATCAAATTCTTTTTTTGCTCCAGCTCCAACCGCTCACTCGACATCCTAGGGTTTGTAGTCGACATGTTTGAGATTCCTGAAATGTTTCGATTTCGATTCGAGAAAACACGGCATATTAAAAACAAGAGAGACGGTGAGTCGCCGGAAGAGAAGAGTGCATGCGGGGGCAAACCACAACAGAATTGAAATAACAGTCAAGGAAAGAGCGAATGGGAAGCGGGGCGGAGTCTTCTTCTTACCTAGCTAGAGAACAAAATCTCCGAGAGGCGCAGCATGTGAGAAGAGCTTCGCAGAGTCAGTGTTTGAATTGTAGCTGTAAAATCTGATTTTTGTGAAAAGATATCTCGAAAATAAAAATAAAA</canonical>
            <polymorphic>CGCTAAAGCAGCTGGTTTTTTATACCGCTCCACATTAATGAATCATTAATCCGTTTGATTAGTTTGGAAAGGTCGAAAAGTCAAGAACTCAAGGTTTTTCTGAGGTATGCTCATTAAGTTAATATATGACTGGTTCTGTGATATAAGTGGTCCATCTTAATCTTGGTTGCTCTTTAATCTAATAGTTTGGCTTCTTGCAGGAACTACGAAAAGCAACTTACTAATGTAACGTTATTGATATTTTCTAATATTTTCAAAAAATGAAAAGCATGCACATCCACCCGAAAAGCTGAAACAGTGGCGCCCCAGCGAACTGTAGATATCACTACCTACTGAACATATCACACTTTTTGGCAGTGTCAAACACGCAACGACGAGCGAAACAAAGCGAGCGTTGATTTTCAATACTCAGATCATTTTGACGTCCACTTTGAAACTATTGAATTTCATCTGGCCTAAAATTTATCTGTAGGCTGCAATTTGTAACCAAACCTTCTGGRTCTCTTTGAGCATGGTAATTGGAAACCAACTCGAAAAATTATGAATTAGAGTTTTTTTATTTATCAATAATCATTTATCAATATTGGCTCCCACTAATTTTCAAATTCTCACTAACCTCTACTTCACTTTTTGGAACGATCAAATTCTTTTTTTGCTCCAGCTCCAACCGCTCACTCGACATCCTAGGGTTTGTAGTCGACATGTTTGAGATTCCTGAAATGTTTCGATTTCGATTCGAGAAAACACGGCATATTAAAAACAAGAGAGACGGTGAGTCGCCGGAAGAGAAGAGTGCATGCGGGGGCAAACCACAACAGAATTGAAATAACAGTCAAGGAAAGAGCGAATGGGAAGCGGGGCGGAGTCTTCTTCTTACCTAGCTAGAGAACAAAATCTCCGAGAGGCGCAGCATGTGAGAAGAGCTTCGCAGAGTCAGTGTTTGAATTGTAGCTGTAAAATCTGATTTTTGTGAAAAGATATCTCGAAAATAAAAATAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAGCAACTTACTAATGTAACG</pcr_primer_p1>
		<pcr_primer_p2>GTGGGAGCCAATATTGATAA</pcr_primer_p2>
		<pcr_amplicon_size>387</pcr_amplicon_size>
		<canonical_amplicon>GAAAAGCAACTTACTAATGTAACGTTATTGATATTTTCTAATATTTTCAAAAAATGAAAAGCATGCACATCCACCCGAAAAGCTGAAACAGTGGCGCCCCAGCGAACTGTAGATATCACTACCTACTGAACATATCACACTTTTTGGCAGTGTCAAACACGCAACGACGAGCGAAACAAAGCGAGCGTTGATTTTCAATACTCAGATCATTTTGACGTCCACTTTGAAACTATTGAATTTCATCTGGCCTAAAATTTATCTGTAGGCTGCAATTTGTAACCAAACCTTCTGGGTCTCTTTGAGCATGGTAATTGGAAACCAACTCGAAAAATTATGAATTAGAGTTTTTTTATTTATCAATAATCATTTATCAATATTGGCTCCCAC</canonical_amplicon>
		<polymorphic_amplicon>GAAAAGCAACTTACTAATGTAACGTTATTGATATTTTCTAATATTTTCAAAAAATGAAAAGCATGCACATCCACCCGAAAAGCTGAAACAGTGGCGCCCCAGCGAACTGTAGATATCACTACCTACTGAACATATCACACTTTTTGGCAGTGTCAAACACGCAACGACGAGCGAAACAAAGCGAGCGTTGATTTTCAATACTCAGATCATTTTGACGTCCACTTTGAAACTATTGAATTTCATCTGGCCTAAAATTTATCTGTAGGCTGCAATTTGTAACCAAACCTTCTGGRTCTCTTTGAGCATGGTAATTGGAAACCAACTCGAAAAATTATGAATTAGAGTTTTTTTATTTATCAATAATCATTTATCAATATTGGCTCCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2629</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1567609</contig_pos>
        <strand></strand>
        <context>CAAATAGAAA[A/G]AGCGAAGGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGCGTCCAGTCAGGTGTAGACAGTGAAGTATGTATAAATCAAATAGAAA</left_flank>
        <right_flank>AGCGAAGGTTTTGGTTGGCAGATGTTCGAATCAAGGTTAGGGTTCAGAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCATGTGAGAAGAGCTTCGCAGAGTCAGTGTTTGAATTGTAGCTGTAAAATCTGATTTTTGTGAAAAGATATCTCGAAAATAAAAATAAAAACTGATATGAAATAGAAAAACTGCAGAACAATGGGAGTTAAAAATGAAGTCAGAGAGAAAAAACAAAATTTGTAAATTCGATTGTTTGCAAATAATGTTTCACCAGGCACTAGTGAGTCATCCCAAAAACGTTTCTCAAAAGACTAAATCCGACAATTTTTGAAATATTTCCAGAATACAGTACCTAACAATTTTTCTATCAAGAAAGAAACTGAATACAAAAATAAAACTGAAAAACGCAAAACCTCAAACATATGCTTATGTATTCGGAAATATTCAAAACACTCACTAATTTTGTCTGAAGAGGACAGACTTTGAGAAAAGAAAAGGAGGCGTGGTTGGGGGAACCCGTGGTTTGGCGTCCAGTCAGGTGTAGACAGTGAAGTATGTATAAATCAAATAGAAAAAGCGAAGGTTTTGGTTGGCAGATGTTCGAATCAAGGTTAGGGTTCAGAAGCTGGAACGCATCAGATTCTGAGATTAGAGCAAGAAGTGGTAGGGAAGCAATAAAGTATATGTGATCGTTTCCACAAACAAAAAGTCATCAGCAATAACTGGTATGCATATTTTTGGTTGTCTTTTTACAGAAAATAAAGCTTCTTTATTTACAGTAACCGGAAAGATAAGAAATCAAAAAATCTGGCAATAAAACAGATCTCTAAAGCATAAAAACCTTTTTAAAAAACAAGTCACCTCAAAATGAGAATTTCGAATTTCGAGAATGTTGTTGCAAAACTCAGAAACATCTGCCAGCTAGACAGAACAATGTTGCAAAATACAATAACAGTAACAAGAAATTGGTGTTTGGTGTTCAAAATTATGGATAAGAGAGAAATGTCGTGAGAAGCATCAACTAAAGATTTCAATCAGTATAAATGAGAAATAAACTTGGACTGCTTTGTTTCAC</canonical>
            <polymorphic>CAGCATGTGAGAAGAGCTTCGCAGAGTCAGTGTTTGAATTGTAGCTGTAAAATCTGATTTTTGTGAAAAGATATCTCGAAAATAAAAATAAAAACTGATATGAAATAGAAAAACTGCAGAACAATGGGAGTTAAAAATGAAGTCAGAGAGAAAAAACAAAATTTGTAAATTCGATTGTTTGCAAATAATGTTTCACCAGGCACTAGTGAGTCATCCCAAAAACGTTTCTCAAAAGACTAAATCCGACAATTTTTGAAATATTTCCAGAATACAGTACCTAACAATTTTTCTATCAAGAAAGAAACTGAATACAAAAATAAAACTGAAAAACGCAAAACCTCAAACATATGCTTATGTATTCGGAAATATTCAAAACACTCACTAATTTTGTCTGAAGAGGACAGACTTTGAGAAAAGAAAAGGAGGCGTGGTTGGGGGAACCCGTGGTTTGGCGTCCAGTCAGGTGTAGACAGTGAAGTATGTATAAATCAAATAGAAARAGCGAAGGTTTTGGTTGGCAGATGTTCGAATCAAGGTTAGGGTTCAGAAGCTGGAACGCATCAGATTCTGAGATTAGAGCAAGAAGTGGTAGGGAAGCAATAAAGTATATGTGATCGTTTCCACAAACAAAAAGTCATCAGCAATAACTGGTATGCATATTTTTGGTTGTCTTTTTACAGAAAATAAAGCTTCTTTATTTACAGTAACCGGAAAGATAAGAAATCAAAAAATCTGGCAATAAAACAGATCTCTAAAGCATAAAAACCTTTTTAAAAAACAAGTCACCTCAAAATGAGAATTTCGAATTTCGAGAATGTTGTTGCAAAACTCAGAAACATCTGCCAGCTAGACAGAACAATGTTGCAAAATACAATAACAGTAACAAGAAATTGGTGTTTGGTGTTCAAAATTATGGATAAGAGAGAAATGTCGTGAGAAGCATCAACTAAAGATTTCAATCAGTATAAATGAGAAATAAACTTGGACTGCTTTGTTTCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGACTTTGAGAAAAGAAAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>GTTATTGCTGATGACTTTTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGACTTTGAGAAAAGAAAAGGAGGCGTGGTTGGGGGAACCCGTGGTTTGGCGTCCAGTCAGGTGTAGACAGTGAAGTATGTATAAATCAAATAGAAAAAGCGAAGGTTTTGGTTGGCAGATGTTCGAATCAAGGTTAGGGTTCAGAAGCTGGAACGCATCAGATTCTGAGATTAGAGCAAGAAGTGGTAGGGAAGCAATAAAGTATATGTGATCGTTTCCACAAACAAAAAGTCATCAGCAATAAC</canonical_amplicon>
		<polymorphic_amplicon>AGACTTTGAGAAAAGAAAAGGAGGCGTGGTTGGGGGAACCCGTGGTTTGGCGTCCAGTCAGGTGTAGACAGTGAAGTATGTATAAATCAAATAGAAARAGCGAAGGTTTTGGTTGGCAGATGTTCGAATCAAGGTTAGGGTTCAGAAGCTGGAACGCATCAGATTCTGAGATTAGAGCAAGAAGTGGTAGGGAAGCAATAAAGTATATGTGATCGTTTCCACAAACAAAAAGTCATCAGCAATAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2630</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1624210</contig_pos>
        <strand>+</strand>
        <context>CTTGCCGTTT[G/T]TGTATGTTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTAGAATATTCTTTGGACTGGCCAATCAACACTTTCACACTTGCCGTTT</left_flank>
        <right_flank>TGTATGTTTATCCGTAAAATCATCACTACCATCAACACTTTCAATTATTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCATTGCTACTAGCATTTTTCTTCTCTTTTTCAAACATTTTTGGAAACTGATTTTAATTTTTAAAAATTTAAATAGCTATAGAACTATTCATTTTGAGATCAGAAAACAATTAATATCCCAAACACAAAACAATAGATATTAACGTTTTCCAAAGAAAAAAATTTCAGAAAATCTGAGAATTTTTGTCATTCAGAAATTTCAAAGTTTTTTTCTAATTTTTTTCCTGGAGCAAAATGACTAAATTCTGAATGTGCCTCAATGTGTTTTTCTGTTCGCGATCTTCCAAAATTTTCGATTTTGTCAGAAACATGTGTGATAAAAACCGGGTCCCCTCCAGATGCAATTTTGCATCTTCTCTCTCATTTTCATTTTTATTTTCTTTTCATTTTCCCTCCGAAGCATTGGTCACCCAGACATTTACATTGTTGCCACCTGCCACCCAAAACCTGTTAGAATATTCTTTGGACTGGCCAATCAACACTTTCACACTTGCCGTTTGTGTATGTTTATCCGTAAAATCATCACTACCATCAACACTTTCAATTATTTTGTTTTATTTTCTTCATTTTTTCAAACAGTAGTGTGTACATCAAAAAAAGGGTAAAAATAGAAACAGTGTATGTTTTTAGTTGTTTTCGATTAGAAAAAAGGGTACAGTACAAATGTTCTGAAACTAGATCATAAATTAATTACAAACACACAAAGTGTGTGGGGTACATACAAAAAGGTTATTGGTGTGATTTAGATACGAAGATGGGACAGTTTCAAGAAGGCGCATTGACGATCCTTCTCTTCATTTATCAGCTTCTCGCAATTCAGTTGGATGTATTCATCGATGTTTCTGGAAGACTAAATAACCAAGGGATTTTTGAGATACTACAACTACAACTTACGGGTTTGACATTTTTTCGGTTTTTGGGAATCCAAACTTTAAGTGTGTGGACTCATCGTGGATACGGATGTTCACTTTTGGTTGCTCCATTAGCTTTGGCTCAGCTG</canonical>
            <polymorphic>CCATTGCTACTAGCATTTTTCTTCTCTTTTTCAAACATTTTTGGAAACTGATTTTAATTTTTAAAAATTTAAATAGCTATAGAACTATTCATTTTGAGATCAGAAAACAATTAATATCCCAAACACAAAACAATAGATATTAACGTTTTCCAAAGAAAAAAATTTCAGAAAATCTGAGAATTTTTGTCATTCAGAAATTTCAAAGTTTTTTTCTAATTTTTTTCCTGGAGCAAAATGACTAAATTCTGAATGTGCCTCAATGTGTTTTTCTGTTCGCGATCTTCCAAAATTTTCGATTTTGTCAGAAACATGTGTGATAAAAACCGGGTCCCCTCCAGATGCAATTTTGCATCTTCTCTCTCATTTTCATTTTTATTTTCTTTTCATTTTCCCTCCGAAGCATTGGTCACCCAGACATTTACATTGTTGCCACCTGCCACCCAAAACCTGTTAGAATATTCTTTGGACTGGCCAATCAACACTTTCACACTTGCCGTTTKTGTATGTTTATCCGTAAAATCATCACTACCATCAACACTTTCAATTATTTTGTTTTATTTTCTTCATTTTTTCAAACAGTAGTGTGTACATCAAAAAAAGGGTAAAAATAGAAACAGTGTATGTTTTTAGTTGTTTTCGATTAGAAAAAAGGGTACAGTACAAATGTTCTGAAACTAGATCATAAATTAATTACAAACACACAAAGTGTGTGGGGTACATACAAAAAGGTTATTGGTGTGATTTAGATACGAAGATGGGACAGTTTCAAGAAGGCGCATTGACGATCCTTCTCTTCATTTATCAGCTTCTCGCAATTCAGTTGGATGTATTCATCGATGTTTCTGGAAGACTAAATAACCAAGGGATTTTTGAGATACTACAACTACAACTTACGGGTTTGACATTTTTTCGGTTTTTGGGAATCCAAACTTTAAGTGTGTGGACTCATCGTGGATACGGATGTTCACTTTTGGTTGCTCCATTAGCTTTGGCTCAGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>198 129 125 93 80 50 47 42 33 33 26 23 23 14 13 12 11 10 7 7 6 2 2 2 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>198 129 125 93 80 50 47 42 36 33 33 26 23 14 12 11 10 7 7 6 2 2 2 2 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAGAAACATGTGTGATAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>AAACAAAATAATTGAAAGTGTTGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCAGAAACATGTGTGATAAAAACCGGGTCCCCTCCAGATGCAATTTTGCATCTTCTCTCTCATTTTCATTTTTATTTTCTTTTCATTTTCCCTCCGAAGCATTGGTCACCCAGACATTTACATTGTTGCCACCTGCCACCCAAAACCTGTTAGAATATTCTTTGGACTGGCCAATCAACACTTTCACACTTGCCGTTTGTGTATGTTTATCCGTAAAATCATCACTACCATCAACACTTTCAATTATTTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>TCAGAAACATGTGTGATAAAAACCGGGTCCCCTCCAGATGCAATTTTGCATCTTCTCTCTCATTTTCATTTTTATTTTCTTTTCATTTTCCCTCCGAAGCATTGGTCACCCAGACATTTACATTGTTGCCACCTGCCACCCAAAACCTGTTAGAATATTCTTTGGACTGGCCAATCAACACTTTCACACTTGCCGTTTKTGTATGTTTATCCGTAAAATCATCACTACCATCAACACTTTCAATTATTTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2631</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1624394</contig_pos>
        <strand>+</strand>
        <context>ACTAGATCAT[A/G]AATTAATTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCGATTAGAAAAAAGGGTACAGTACAAATGTTCTGAAACTAGATCAT</left_flank>
        <right_flank>AATTAATTACAAACACACAAAGTGTGTGGGGTACATACAAAAAGGTTATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCATTCAGAAATTTCAAAGTTTTTTTCTAATTTTTTTCCTGGAGCAAAATGACTAAATTCTGAATGTGCCTCAATGTGTTTTTCTGTTCGCGATCTTCCAAAATTTTCGATTTTGTCAGAAACATGTGTGATAAAAACCGGGTCCCCTCCAGATGCAATTTTGCATCTTCTCTCTCATTTTCATTTTTATTTTCTTTTCATTTTCCCTCCGAAGCATTGGTCACCCAGACATTTACATTGTTGCCACCTGCCACCCAAAACCTGTTAGAATATTCTTTGGACTGGCCAATCAACACTTTCACACTTGCCGTTTGTGTATGTTTATCCGTAAAATCATCACTACCATCAACACTTTCAATTATTTTGTTTTATTTTCTTCATTTTTTCAAACAGTAGTGTGTACATCAAAAAAAGGGTAAAAATAGAAACAGTGTATGTTTTTAGTTGTTTTCGATTAGAAAAAAGGGTACAGTACAAATGTTCTGAAACTAGATCATAAATTAATTACAAACACACAAAGTGTGTGGGGTACATACAAAAAGGTTATTGGTGTGATTTAGATACGAAGATGGGACAGTTTCAAGAAGGCGCATTGACGATCCTTCTCTTCATTTATCAGCTTCTCGCAATTCAGTTGGATGTATTCATCGATGTTTCTGGAAGACTAAATAACCAAGGGATTTTTGAGATACTACAACTACAACTTACGGGTTTGACATTTTTTCGGTTTTTGGGAATCCAAACTTTAAGTGTGTGGACTCATCGTGGATACGGATGTTCACTTTTGGTTGCTCCATTAGCTTTGGCTCAGCTGGACGGAAAGTGGCGGAGCTGATTCTGAAAATATTACATTTTTTATATGAATCTAGATAAATATCCTGGACTCACGCTTCCCGAGTCATGAACTGGTTGAAAACAGCAGACTGAGCGACTCTGACAAGTTTTGGAGCTGACGACATGTTGTGAAGTTTTTGAAATTGAATATATCAGTTGACTGA</canonical>
            <polymorphic>TGTCATTCAGAAATTTCAAAGTTTTTTTCTAATTTTTTTCCTGGAGCAAAATGACTAAATTCTGAATGTGCCTCAATGTGTTTTTCTGTTCGCGATCTTCCAAAATTTTCGATTTTGTCAGAAACATGTGTGATAAAAACCGGGTCCCCTCCAGATGCAATTTTGCATCTTCTCTCTCATTTTCATTTTTATTTTCTTTTCATTTTCCCTCCGAAGCATTGGTCACCCAGACATTTACATTGTTGCCACCTGCCACCCAAAACCTGTTAGAATATTCTTTGGACTGGCCAATCAACACTTTCACACTTGCCGTTTGTGTATGTTTATCCGTAAAATCATCACTACCATCAACACTTTCAATTATTTTGTTTTATTTTCTTCATTTTTTCAAACAGTAGTGTGTACATCAAAAAAAGGGTAAAAATAGAAACAGTGTATGTTTTTAGTTGTTTTCGATTAGAAAAAAGGGTACAGTACAAATGTTCTGAAACTAGATCATRAATTAATTACAAACACACAAAGTGTGTGGGGTACATACAAAAAGGTTATTGGTGTGATTTAGATACGAAGATGGGACAGTTTCAAGAAGGCGCATTGACGATCCTTCTCTTCATTTATCAGCTTCTCGCAATTCAGTTGGATGTATTCATCGATGTTTCTGGAAGACTAAATAACCAAGGGATTTTTGAGATACTACAACTACAACTTACGGGTTTGACATTTTTTCGGTTTTTGGGAATCCAAACTTTAAGTGTGTGGACTCATCGTGGATACGGATGTTCACTTTTGGTTGCTCCATTAGCTTTGGCTCAGCTGGACGGAAAGTGGCGGAGCTGATTCTGAAAATATTACATTTTTTATATGAATCTAGATAAATATCCTGGACTCACGCTTCCCGAGTCATGAACTGGTTGAAAACAGCAGACTGAGCGACTCTGACAAGTTTTGGAGCTGACGACATGTTGTGAAGTTTTTGAAATTGAATATATCAGTTGACTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTTTAGTTGTTTTCGATTAGA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATCCCTTGGTTATTTAGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTTTTTAGTTGTTTTCGATTAGAAAAAAGGGTACAGTACAAATGTTCTGAAACTAGATCATAAATTAATTACAAACACACAAAGTGTGTGGGGTACATACAAAAAGGTTATTGGTGTGATTTAGATACGAAGATGGGACAGTTTCAAGAAGGCGCATTGACGATCCTTCTCTTCATTTATCAGCTTCTCGCAATTCAGTTGGATGTATTCATCGATGTTTCTGGAAGACTAAATAACCAAGGGATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TGTTTTTAGTTGTTTTCGATTAGAAAAAAGGGTACAGTACAAATGTTCTGAAACTAGATCATRAATTAATTACAAACACACAAAGTGTGTGGGGTACATACAAAAAGGTTATTGGTGTGATTTAGATACGAAGATGGGACAGTTTCAAGAAGGCGCATTGACGATCCTTCTCTTCATTTATCAGCTTCTCGCAATTCAGTTGGATGTATTCATCGATGTTTCTGGAAGACTAAATAACCAAGGGATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2633</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>27584</contig_pos>
        <strand></strand>
        <context>TTCGGATTTT[T/C]TCCTTTTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCCCCCCACTATGGGAAAAAGCGCATTTTGTTCTCGTTTTTTCGGATTTT</left_flank>
        <right_flank>TCCTTTTTTAAGTTTTGGATTTTGGAATTTTAAAACTTTCCGGTAATTCT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCACACATTGTTGCGTCACAGAAGAGAAGGAAGAAAAAGAAAAAGAAAAAGGTCACACAAGTAGCGGTCAACACAGTATGTAGTCATTAGAGAGTAAATGAGAGAGTGTAGGATATGAAGAGACGCAGAGAAACAAGAGAGAAAAGATACAAATGCTGCCATTTACCCGTCTTTTACTTCATAGAGATTGACCCAACAAGTATCGTTTTCAAGGTTTTTTAGTGAGGTACTTGTGATTTTTTATATTTTCCTCCGACCAAAATTTTTTTGTCTGGACAGGATAAATGTGATCCGTAAAGCATTGTGTGTGCATTTTCCAAAAGACAAAAGCCGTTTTTTTCCTTGTTTGGAGAAGGGGAAAACGGTTCTCTGTTTCTCTGCGTCTCTCTATCTCTAAGCCCCCCCTAAGCTCAATTGAAATTCGGATTAGGCTTTGTTTGATGTTTATCCCCCCACTATGGGAAAAAGCGCATTTTGTTCTCGTTTTTTCGGATTTTTTCCTTTTTTAAGTTTTGGATTTTGGAATTTTAAAACTTTCCGGTAATTCTTCAAGCGTTCTTATACGGTCGGTGGTATAGAGGAGGGTCTAAACAGTTTAATGTGTACTAAGCAAGACTAGAGCTTTATTTTTGTAGTTGACAACTTTCTTATAGCACTTTTGGTTTTTGAGTTATGCGCCTTTAAAGATTATGGGCACTGAGGCAATGGCGCCTGAAAGAGAGGCGCGCCAACTTTAAAGGCCCATAGCTCAAAAACCAGAAAAGTTACAAAAAAGTTGTCAATTACAAAAATGAAGCTCTAGCCTTTTTTAGTTTACGGCGCAAATTTCTGGACCCTTGCTAACACGGTTTTTGAGCTATGCGCCTTTAACAATGAGGTGCCCTCTCCCCTCTTCCGGGCGCCTCGCCCAGAGGTACCTTATCTTTAAAGGCGCACTCAAAAACCAAAAGAGCTACAAAAAAGTAGTCAACTGCAAAAATGAAGCTCTAGTCTTGTTT</canonical>
            <polymorphic>TCTCACACATTGTTGCGTCACAGAAGAGAAGGAAGAAAAAGAAAAAGAAAAAGGTCACACAAGTAGCGGTCAACACAGTATGTAGTCATTAGAGAGTAAATGAGAGAGTGTAGGATATGAAGAGACGCAGAGAAACAAGAGAGAAAAGATACAAATGCTGCCATTTACCCGTCTTTTACTTCATAGAGATTGACCCAACAAGTATCGTTTTCAAGGTTTTTTAGTGAGGTACTTGTGATTTTTTATATTTTCCTCCGACCAAAATTTTTTTGTCTGGACAGGATAAATGTGATCCGTAAAGCATTGTGTGTGCATTTTCCAAAAGACAAAAGCCGTTTTTTTCCTTGTTTGGAGAAGGGGAAAACGGTTCTCTGTTTCTCTGCGTCTCTCTATCTCTAAGCCCCCCCTAAGCTCAATTGAAATTCGGATTAGGCTTTGTTTGATGTTTATCCCCCCACTATGGGAAAAAGCGCATTTTGTTCTCGTTTTTTCGGATTTTYTCCTTTTTTAAGTTTTGGATTTTGGAATTTTAAAACTTTCCGGTAATTCTTCAAGCGTTCTTATACGGTCGGTGGTATAGAGGAGGGTCTAAACAGTTTAATGTGTACTAAGCAAGACTAGAGCTTTATTTTTGTAGTTGACAACTTTCTTATAGCACTTTTGGTTTTTGAGTTATGCGCCTTTAAAGATTATGGGCACTGAGGCAATGGCGCCTGAAAGAGAGGCGCGCCAACTTTAAAGGCCCATAGCTCAAAAACCAGAAAAGTTACAAAAAAGTTGTCAATTACAAAAATGAAGCTCTAGCCTTTTTTAGTTTACGGCGCAAATTTCTGGACCCTTGCTAACACGGTTTTTGAGCTATGCGCCTTTAACAATGAGGTGCCCTCTCCCCTCTTCCGGGCGCCTCGCCCAGAGGTACCTTATCTTTAAAGGCGCACTCAAAAACCAAAAGAGCTACAAAAAAGTAGTCAACTGCAAAAATGAAGCTCTAGTCTTGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGGCTTTGTTTGATGTTTATC</pcr_primer_p1>
		<pcr_primer_p2>AGGTTCTTCGATGAATTAGGA</pcr_primer_p2>
		<pcr_amplicon_size>638</pcr_amplicon_size>
		<canonical_amplicon>TTAGGCTTTGTTTGATGTTTATCCCCCCACTATGGGAAAAAGCGCATTTTGTTCTCGTTTTTTCGGATTTTTTCCTTTTTTAAGTTTTGGAT</canonical_amplicon>
		<polymorphic_amplicon>TTAGGCTTTGTTTGATGTTTATCCCCCCACTATGGGAAAAAGCGCATTTTGTTCTCGTTTTTTCGGATTTTYTCCTTTTTTAAGTTTTGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2635</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>27636</contig_pos>
        <strand></strand>
        <context>GGTAATTCTT[C/A]AAGCGTTCTK</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CCTTTTTTAAGTTTTGGATTTTGGAATTTTAAAACTTTCCGGTAATTCTT</left_flank>
        <right_flank>AAGCGTTCTTATACGGTCGGTGGTATAGAGGAGGGTCTAAACAGTTTAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTCACACAAGTAGCGGTCAACACAGTATGTAGTCATTAGAGAGTAAATGAGAGAGTGTAGGATATGAAGAGACGCAGAGAAACAAGAGAGAAAAGATACAAATGCTGCCATTTACCCGTCTTTTACTTCATAGAGATTGACCCAACAAGTATCGTTTTCAAGGTTTTTTAGTGAGGTACTTGTGATTTTTTATATTTTCCTCCGACCAAAATTTTTTTGTCTGGACAGGATAAATGTGATCCGTAAAGCATTGTGTGTGCATTTTCCAAAAGACAAAAGCCGTTTTTTTCCTTGTTTGGAGAAGGGGAAAACGGTTCTCTGTTTCTCTGCGTCTCTCTATCTCTAAGCCCCCCCTAAGCTCAATTGAAATTCGGATTAGGCTTTGTTTGATGTTTATCCCCCCACTATGGGAAAAAGCGCATTTTGTTCTCGTTTTTTCGGATTTTTTCCTTTTTTAAGTTTTGGATTTTGGAATTTTAAAACTTTCCGGTAATTCTTCAAGCGTTCTTATACGGTCGGTGGTATAGAGGAGGGTCTAAACAGTTTAATGTGTACTAAGCAAGACTAGAGCTTTATTTTTGTAGTTGACAACTTTCTTATAGCACTTTTGGTTTTTGAGTTATGCGCCTTTAAAGATTATGGGCACTGAGGCAATGGCGCCTGAAAGAGAGGCGCGCCAACTTTAAAGGCCCATAGCTCAAAAACCAGAAAAGTTACAAAAAAGTTGTCAATTACAAAAATGAAGCTCTAGCCTTTTTTAGTTTACGGCGCAAATTTCTGGACCCTTGCTAACACGGTTTTTGAGCTATGCGCCTTTAACAATGAGGTGCCCTCTCCCCTCTTCCGGGCGCCTCGCCCAGAGGTACCTTATCTTTAAAGGCGCACTCAAAAACCAAAAGAGCTACAAAAAAGTAGTCAACTGCAAAAATGAAGCTCTAGTCTTGTTTAGTGTGATTTATAAATTTTTCTCAATTTCCGGTCGTTTAGAAGCTTCCTAAT</canonical>
            <polymorphic>GGTCACACAAGTAGCGGTCAACACAGTATGTAGTCATTAGAGAGTAAATGAGAGAGTGTAGGATATGAAGAGACGCAGAGAAACAAGAGAGAAAAGATACAAATGCTGCCATTTACCCGTCTTTTACTTCATAGAGATTGACCCAACAAGTATCGTTTTCAAGGTTTTTTAGTGAGGTACTTGTGATTTTTTATATTTTCCTCCGACCAAAATTTTTTTGTCTGGACAGGATAAATGTGATCCGTAAAGCATTGTGTGTGCATTTTCCAAAAGACAAAAGCCGTTTTTTTCCTTGTTTGGAGAAGGGGAAAACGGTTCTCTGTTTCTCTGCGTCTCTCTATCTCTAAGCCCCCCCTAAGCTCAATTGAAATTCGGATTAGGCTTTGTTTGATGTTTATCCCCCCACTATGGGAAAAAGCGCATTTTGTTCTCGTTTTTTCGGATTTTTTCCTTTTTTAAGTTTTGGATTTTGGAATTTTAAAACTTTCCGGTAATTCTTMAAGCGTTCTTATACGGTCGGTGGTATAGAGGAGGGTCTAAACAGTTTAATGTGTACTAAGCAAGACTAGAGCTTTATTTTTGTAGTTGACAACTTTCTTATAGCACTTTTGGTTTTTGAGTTATGCGCCTTTAAAGATTATGGGCACTGAGGCAATGGCGCCTGAAAGAGAGGCGCGCCAACTTTAAAGGCCCATAGCTCAAAAACCAGAAAAGTTACAAAAAAGTTGTCAATTACAAAAATGAAGCTCTAGCCTTTTTTAGTTTACGGCGCAAATTTCTGGACCCTTGCTAACACGGTTTTTGAGCTATGCGCCTTTAACAATGAGGTGCCCTCTCCCCTCTTCCGGGCGCCTCGCCCAGAGGTACCTTATCTTTAAAGGCGCACTCAAAAACCAAAAGAGCTACAAAAAAGTAGTCAACTGCAAAAATGAAGCTCTAGTCTTGTTTAGTGTGATTTATAAATTTTTCTCAATTTCCGGTCGTTTAGAAGCTTCCTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGGCTTTGTTTGATGTTTATC</pcr_primer_p1>
		<pcr_primer_p2>AGGTTCTTCGATGAATTAGGA</pcr_primer_p2>
		<pcr_amplicon_size>638</pcr_amplicon_size>
		<canonical_amplicon>TTAGGCTTTGTTTGATGTTTATCCCCCCACTATGGGAAAAAGCGCATTTTGTTCTCGTTTTTTCGGATTTTTTCCTTTTTTAAGTTTTGGATTTTGGAATTTTAAAACTTTCCGGTAATTCTTCAAGCGTTCTTATACGGTCGG</canonical_amplicon>
		<polymorphic_amplicon>TTAGGCTTTGTTTGATGTTTATCCCCCCACTATGGGAAAAAGCGCATTTTGTTCTCGTTTTTTCGGATTTTTTCCTTTTTTAAGTTTTGGATTTTGGAATTTTAAAACTTTCCGGTAATTCTTMAAGCGTTCTTATACGGTCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2636</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>27646</contig_pos>
        <strand></strand>
        <context>MAAGCGTTCT[T/G]ATACGGTCRG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GTTTTGGATTTTGGAATTTTAAAACTTTCCGGTAATTCTTCAAGCGTTCT</left_flank>
        <right_flank>ATACGGTCGGTGGTATAGAGGAGGGTCTAAACAGTTTAATGTGTACTAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAGCGGTCAACACAGTATGTAGTCATTAGAGAGTAAATGAGAGAGTGTAGGATATGAAGAGACGCAGAGAAACAAGAGAGAAAAGATACAAATGCTGCCATTTACCCGTCTTTTACTTCATAGAGATTGACCCAACAAGTATCGTTTTCAAGGTTTTTTAGTGAGGTACTTGTGATTTTTTATATTTTCCTCCGACCAAAATTTTTTTGTCTGGACAGGATAAATGTGATCCGTAAAGCATTGTGTGTGCATTTTCCAAAAGACAAAAGCCGTTTTTTTCCTTGTTTGGAGAAGGGGAAAACGGTTCTCTGTTTCTCTGCGTCTCTCTATCTCTAAGCCCCCCCTAAGCTCAATTGAAATTCGGATTAGGCTTTGTTTGATGTTTATCCCCCCACTATGGGAAAAAGCGCATTTTGTTCTCGTTTTTTCGGATTTTTTCCTTTTTTAAGTTTTGGATTTTGGAATTTTAAAACTTTCCGGTAATTCTTCAAGCGTTCTTATACGGTCGGTGGTATAGAGGAGGGTCTAAACAGTTTAATGTGTACTAAGCAAGACTAGAGCTTTATTTTTGTAGTTGACAACTTTCTTATAGCACTTTTGGTTTTTGAGTTATGCGCCTTTAAAGATTATGGGCACTGAGGCAATGGCGCCTGAAAGAGAGGCGCGCCAACTTTAAAGGCCCATAGCTCAAAAACCAGAAAAGTTACAAAAAAGTTGTCAATTACAAAAATGAAGCTCTAGCCTTTTTTAGTTTACGGCGCAAATTTCTGGACCCTTGCTAACACGGTTTTTGAGCTATGCGCCTTTAACAATGAGGTGCCCTCTCCCCTCTTCCGGGCGCCTCGCCCAGAGGTACCTTATCTTTAAAGGCGCACTCAAAAACCAAAAGAGCTACAAAAAAGTAGTCAACTGCAAAAATGAAGCTCTAGTCTTGTTTAGTGTGATTTATAAATTTTTCTCAATTTCCGGTCGTTTAGAAGCTTCCTAATTCATCGAAGA</canonical>
            <polymorphic>GTAGCGGTCAACACAGTATGTAGTCATTAGAGAGTAAATGAGAGAGTGTAGGATATGAAGAGACGCAGAGAAACAAGAGAGAAAAGATACAAATGCTGCCATTTACCCGTCTTTTACTTCATAGAGATTGACCCAACAAGTATCGTTTTCAAGGTTTTTTAGTGAGGTACTTGTGATTTTTTATATTTTCCTCCGACCAAAATTTTTTTGTCTGGACAGGATAAATGTGATCCGTAAAGCATTGTGTGTGCATTTTCCAAAAGACAAAAGCCGTTTTTTTCCTTGTTTGGAGAAGGGGAAAACGGTTCTCTGTTTCTCTGCGTCTCTCTATCTCTAAGCCCCCCCTAAGCTCAATTGAAATTCGGATTAGGCTTTGTTTGATGTTTATCCCCCCACTATGGGAAAAAGCGCATTTTGTTCTCGTTTTTTCGGATTTTTTCCTTTTTTAAGTTTTGGATTTTGGAATTTTAAAACTTTCCGGTAATTCTTCAAGCGTTCTKATACGGTCGGTGGTATAGAGGAGGGTCTAAACAGTTTAATGTGTACTAAGCAAGACTAGAGCTTTATTTTTGTAGTTGACAACTTTCTTATAGCACTTTTGGTTTTTGAGTTATGCGCCTTTAAAGATTATGGGCACTGAGGCAATGGCGCCTGAAAGAGAGGCGCGCCAACTTTAAAGGCCCATAGCTCAAAAACCAGAAAAGTTACAAAAAAGTTGTCAATTACAAAAATGAAGCTCTAGCCTTTTTTAGTTTACGGCGCAAATTTCTGGACCCTTGCTAACACGGTTTTTGAGCTATGCGCCTTTAACAATGAGGTGCCCTCTCCCCTCTTCCGGGCGCCTCGCCCAGAGGTACCTTATCTTTAAAGGCGCACTCAAAAACCAAAAGAGCTACAAAAAAGTAGTCAACTGCAAAAATGAAGCTCTAGTCTTGTTTAGTGTGATTTATAAATTTTTCTCAATTTCCGGTCGTTTAGAAGCTTCCTAATTCATCGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTTTGGATTTTGGAATTTTA</pcr_primer_p1>
		<pcr_primer_p2>AGGTTCTTCGATGAATTAGGA</pcr_primer_p2>
		<pcr_amplicon_size>557</pcr_amplicon_size>
		<canonical_amplicon>AAGTTTTGGATTTTGGAATTTTAAAACTTTCCGGTAATTCTTCAAGCGTTCTTATACGGTCGGTGGTATAGAG</canonical_amplicon>
		<polymorphic_amplicon>AAGTTTTGGATTTTGGAATTTTAAAACTTTCCGGTAATTCTTCAAGCGTTCTKATACGGTCGGTGGTATAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2637</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>27655</contig_pos>
        <strand></strand>
        <context>TKATACGGTC[G/A]GTGGTATAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTGGAATTTTAAAACTTTCCGGTAATTCTTCAAGCGTTCTTATACGGTC</left_flank>
        <right_flank>GTGGTATAGAGGAGGGTCTAAACAGTTTAATGTGTACTAAGCAAGACTAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACACAGTATGTAGTCATTAGAGAGTAAATGAGAGAGTGTAGGATATGAAGAGACGCAGAGAAACAAGAGAGAAAAGATACAAATGCTGCCATTTACCCGTCTTTTACTTCATAGAGATTGACCCAACAAGTATCGTTTTCAAGGTTTTTTAGTGAGGTACTTGTGATTTTTTATATTTTCCTCCGACCAAAATTTTTTTGTCTGGACAGGATAAATGTGATCCGTAAAGCATTGTGTGTGCATTTTCCAAAAGACAAAAGCCGTTTTTTTCCTTGTTTGGAGAAGGGGAAAACGGTTCTCTGTTTCTCTGCGTCTCTCTATCTCTAAGCCCCCCCTAAGCTCAATTGAAATTCGGATTAGGCTTTGTTTGATGTTTATCCCCCCACTATGGGAAAAAGCGCATTTTGTTCTCGTTTTTTCGGATTTTTTCCTTTTTTAAGTTTTGGATTTTGGAATTTTAAAACTTTCCGGTAATTCTTCAAGCGTTCTTATACGGTCGGTGGTATAGAGGAGGGTCTAAACAGTTTAATGTGTACTAAGCAAGACTAGAGCTTTATTTTTGTAGTTGACAACTTTCTTATAGCACTTTTGGTTTTTGAGTTATGCGCCTTTAAAGATTATGGGCACTGAGGCAATGGCGCCTGAAAGAGAGGCGCGCCAACTTTAAAGGCCCATAGCTCAAAAACCAGAAAAGTTACAAAAAAGTTGTCAATTACAAAAATGAAGCTCTAGCCTTTTTTAGTTTACGGCGCAAATTTCTGGACCCTTGCTAACACGGTTTTTGAGCTATGCGCCTTTAACAATGAGGTGCCCTCTCCCCTCTTCCGGGCGCCTCGCCCAGAGGTACCTTATCTTTAAAGGCGCACTCAAAAACCAAAAGAGCTACAAAAAAGTAGTCAACTGCAAAAATGAAGCTCTAGTCTTGTTTAGTGTGATTTATAAATTTTTCTCAATTTCCGGTCGTTTAGAAGCTTCCTAATTCATCGAAGAACCTTGACA</canonical>
            <polymorphic>AACACAGTATGTAGTCATTAGAGAGTAAATGAGAGAGTGTAGGATATGAAGAGACGCAGAGAAACAAGAGAGAAAAGATACAAATGCTGCCATTTACCCGTCTTTTACTTCATAGAGATTGACCCAACAAGTATCGTTTTCAAGGTTTTTTAGTGAGGTACTTGTGATTTTTTATATTTTCCTCCGACCAAAATTTTTTTGTCTGGACAGGATAAATGTGATCCGTAAAGCATTGTGTGTGCATTTTCCAAAAGACAAAAGCCGTTTTTTTCCTTGTTTGGAGAAGGGGAAAACGGTTCTCTGTTTCTCTGCGTCTCTCTATCTCTAAGCCCCCCCTAAGCTCAATTGAAATTCGGATTAGGCTTTGTTTGATGTTTATCCCCCCACTATGGGAAAAAGCGCATTTTGTTCTCGTTTTTTCGGATTTTTTCCTTTTTTAAGTTTTGGATTTTGGAATTTTAAAACTTTCCGGTAATTCTTCAAGCGTTCTTATACGGTCRGTGGTATAGAGGAGGGTCTAAACAGTTTAATGTGTACTAAGCAAGACTAGAGCTTTATTTTTGTAGTTGACAACTTTCTTATAGCACTTTTGGTTTTTGAGTTATGCGCCTTTAAAGATTATGGGCACTGAGGCAATGGCGCCTGAAAGAGAGGCGCGCCAACTTTAAAGGCCCATAGCTCAAAAACCAGAAAAGTTACAAAAAAGTTGTCAATTACAAAAATGAAGCTCTAGCCTTTTTTAGTTTACGGCGCAAATTTCTGGACCCTTGCTAACACGGTTTTTGAGCTATGCGCCTTTAACAATGAGGTGCCCTCTCCCCTCTTCCGGGCGCCTCGCCCAGAGGTACCTTATCTTTAAAGGCGCACTCAAAAACCAAAAGAGCTACAAAAAAGTAGTCAACTGCAAAAATGAAGCTCTAGTCTTGTTTAGTGTGATTTATAAATTTTTCTCAATTTCCGGTCGTTTAGAAGCTTCCTAATTCATCGAAGAACCTTGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>498 464 38</canonical_bands>
                <polymorphic_bands>962 38</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTTTGGATTTTGGAATTTTA</pcr_primer_p1>
		<pcr_primer_p2>AGGTTCTTCGATGAATTAGGA</pcr_primer_p2>
		<pcr_amplicon_size>557</pcr_amplicon_size>
		<canonical_amplicon>AAGTTTTGGATTTTGGAATTTTAAAACTTTCCGGTAATTCTTCAAGCGTTCTTATACGGTCGGTGGTATAGAGGAGGGTCTAAACAGTTTAATGTGTACTAAGCAAGACTAGAGCTTTATTTTTGTAGTTGACAACTTTCTTATAGCACTTTTGGTTTTTGAGTTATGCGCCTTTAAAGATTATGGGCACTGAGGCAATGGCGCCTGAAAGAGAGGCGCGCCAACTTTAAAGGCCCATAGCTCAAAAACCAGAAAAGTTACAAAAAAGTTGTCAATTACAAAAATGAAGCTCTAGCCTTTTTTAGTTTACGGCGCAAATTTCTGGACCCTTGCTAACACGGTTTTTGAGCTATGCGCCTTTAACAATGAGGTGCCCTCTCCCCTCTTCCGGGCGCCTCGCCCAGAGGTACCTTATCTTTAAAGGCGCACTCAAAAACCAAAAGAGCTACAAAAAAGTAGTCAACTGCAAAAATGAAGCTCTAGTCTTGTTTAGTGTGATTTATAAATTTTTCTCAATTTCCGGTCGTTTAGAAGCTTCCTAATTCATCGAAGAACCT</canonical_amplicon>
		<polymorphic_amplicon>AAGTTTTGGATTTTGGAATTTTAAAACTTTCCGGTAATTCTTCAAGCGTTCTTATACGGTCRGTGGTATAGAGGAGGGTCTAAACAGTTTAATGTGTACTAAGCAAGACTAGAGCTTTATTTTTGTAGTTGACAACTTTCTTATAGCACTTTTGGTTTTTGAGTTATGCGCCTTTAAAGATTATGGGCACTGAGGCAATGGCGCCTGAAAGAGAGGCGCGCCAACTTTAAAGGCCCATAGCTCAAAAACCAGAAAAGTTACAAAAAAGTTGTCAATTACAAAAATGAAGCTCTAGCCTTTTTTAGTTTACGGCGCAAATTTCTGGACCCTTGCTAACACGGTTTTTGAGCTATGCGCCTTTAACAATGAGGTGCCCTCTCCCCTCTTCCGGGCGCCTCGCCCAGAGGTACCTTATCTTTAAAGGCGCACTCAAAAACCAAAAGAGCTACAAAAAAGTAGTCAACTGCAAAAATGAAGCTCTAGTCTTGTTTAGTGTGATTTATAAATTTTTCTCAATTTCCGGTCGTTTAGAAGCTTCCTAATTCATCGAAGAACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2643</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>29547</contig_pos>
        <strand>+</strand>
        <context>TCTAAAGGAA[A/T]CCGAGAGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGGAGGCAAATTTTTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAA</left_flank>
        <right_flank>CCGAGAGATTCAGAAATTCGCGCCGCCTAGGACCCTCTTAGTTTCCTACA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCATCTAAATATTCTTTTTTTTTTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAATCCTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCATGTCATTGCTTTCCTTCGTTTTGTGTTCCTGGAGTATAAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTGGAGGCAAATTTTTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAACCGAGAGATTCAGAAATTCGCGCCGCCTAGGACCCTCTTAGTTTCCTACACTCTCTCGCCGCTTCCCGAGAAGAAGAAGAAGAAGAAGCCGTTGAGAGGGGGGGGGGGGGCTTCTCCTTCTTCTTTTTCTTTTTCTTCTTTTCCGGAGACACCAATGTTTTATATACACATTCCACGACACATTTCACCACCACCACACATTTTCCACCCATCATTTTTATTCTTATTTTCCCTTTTTTTGTATTGCTCAAAATCTTTAATTGCAATTATCTCAATTCCTAGAATAGCTACCAAAAAGTAATTAATTATGAAAATTTATAACATTTCATTTTACATATTTTACTAGTTGATAACTTTTTTGTAACTTCCACGGTTTTTGAGATATGCGCCTTTAACCATGAGGTGCTCTCCCCCTCTTTTGCGCGCCCTGAGGTGCCCTATTTTTAAAGGCGCGTAGCTCAAAAACCAGAAAAGCTACAAAACAGTTATCAACTAGTAGA</canonical>
            <polymorphic>GTCATCTAAATATTCTTTTTTTTTTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAATCCTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCATGTCATTGCTTTCCTTCGTTTTGTGTTCCTGGAGTATAAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTGGAGGCAAATTTTTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAWCCGAGAGATTCAGAAATTCGCGCCGCCTAGGACCCTCTTAGTTTCCTACACTCTCTCGCCGCTTCCCGAGAAGAAGAAGAAGAAGAAGCCGTTGAGAGGGGGGGGGGGGGCTTCTCCTTCTTCTTTTTCTTTTTCTTCTTTTCCGGAGACACCAATGTTTTATATACACATTCCACGACACATTTCACCACCACCACACATTTTCCACCCATCATTTTTATTCTTATTTTCCCTTTTTTTGTATTGCTCAAAATCTTTAATTGCAATTATCTCAATTCCTAGAATAGCTACCAAAAAGTAATTAATTATGAAAATTTATAACATTTCATTTTACATATTTTACTAGTTGATAACTTTTTTGTAACTTCCACGGTTTTTGAGATATGCGCCTTTAACCATGAGGTGCTCTCCCCCTCTTTTGCGCGCCCTGAGGTGCCCTATTTTTAAAGGCGCGTAGCTCAAAAACCAGAAAAGCTACAAAACAGTTATCAACTAGTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCCGGAAGTTTCCATAG</pcr_primer_p1>
		<pcr_primer_p2>CGAGAGAGTGTAGGAAACTAAGA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>ATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTGGAGGCAAATTTTTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAACCGAGAGATTCAGAAATTCGCGCCGCCTAGGACCCTCTTAGTTTCCTACACTCTCTCG</canonical_amplicon>
		<polymorphic_amplicon>ATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTGGAGGCAAATTTTTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAWCCGAGAGATTCAGAAATTCGCGCCGCCTAGGACCCTCTTAGTTTCCTACACTCTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2644</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>29510</contig_pos>
        <strand>+</strand>
        <context>GAGGCAAATT[C/T]TTAGCCTCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTGGAGGCAAATT</left_flank>
        <right_flank>TTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAACCGAGAGATTCAG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCAAAGGCAACTGAGATAACCAGGCTTAAAGTAACGTCATCTAAATATTCTTTTTTTTTTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAATCCTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCATGTCATTGCTTTCCTTCGTTTTGTGTTCCTGGAGTATAAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTGGAGGCAAATTTTTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAACCGAGAGATTCAGAAATTCGCGCCGCCTAGGACCCTCTTAGTTTCCTACACTCTCTCGCCGCTTCCCGAGAAGAAGAAGAAGAAGAAGCCGTTGAGAGGGGGGGGGGGGGCTTCTCCTTCTTCTTTTTCTTTTTCTTCTTTTCCGGAGACACCAATGTTTTATATACACATTCCACGACACATTTCACCACCACCACACATTTTCCACCCATCATTTTTATTCTTATTTTCCCTTTTTTTGTATTGCTCAAAATCTTTAATTGCAATTATCTCAATTCCTAGAATAGCTACCAAAAAGTAATTAATTATGAAAATTTATAACATTTCATTTTACATATTTTACTAGTTGATAACTTTTTTGTAACTTCCACGGTTTTTGAGATATGCGCCTTTAACCATGAGGTGCTCTCCCCCTCTTTTGCGCGCCCTGAGGTGCCCTATTTTTAAAGGCGCGTAGCTCAAA</canonical>
            <polymorphic>CTTCAAAGGCAACTGAGATAACCAGGCTTAAAGTAACGTCATCTAAATATTCTTTTTTTTTTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAATCCTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCATGTCATTGCTTTCCTTCGTTTTGTGTTCCTGGAGTATAAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTGGAGGCAAATTYTTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAACCGAGAGATTCAGAAATTCGCGCCGCCTAGGACCCTCTTAGTTTCCTACACTCTCTCGCCGCTTCCCGAGAAGAAGAAGAAGAAGAAGCCGTTGAGAGGGGGGGGGGGGGCTTCTCCTTCTTCTTTTTCTTTTTCTTCTTTTCCGGAGACACCAATGTTTTATATACACATTCCACGACACATTTCACCACCACCACACATTTTCCACCCATCATTTTTATTCTTATTTTCCCTTTTTTTGTATTGCTCAAAATCTTTAATTGCAATTATCTCAATTCCTAGAATAGCTACCAAAAAGTAATTAATTATGAAAATTTATAACATTTCATTTTACATATTTTACTAGTTGATAACTTTTTTGTAACTTCCACGGTTTTTGAGATATGCGCCTTTAACCATGAGGTGCTCTCCCCCTCTTTTGCGCGCCCTGAGGTGCCCTATTTTTAAAGGCGCGTAGCTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>305 298 151 58 56 47 44 22 13 6</canonical_bands>
                <polymorphic_bands>305 298 151 114 47 44 22 13 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCCGGAAGTTTCCATAG</pcr_primer_p1>
		<pcr_primer_p2>CGAGAGAGTGTAGGAAACTAAGA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>ATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTGGAGGCAAATTTTTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAACCGAGAGATTCAGAAATTCGCGCCGCCTAGGACCCTCTTAGTTTCCTACACTCTCTCG</canonical_amplicon>
		<polymorphic_amplicon>ATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTGGAGGCAAATTYTTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAACCGAGAGATTCAGAAATTCGCGCCGCCTAGGACCCTCTTAGTTTCCTACACTCTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2646</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>29368</contig_pos>
        <strand>+</strand>
        <context>TGGGAAATTC[A/G]AATTTCCGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTC</left_flank>
        <right_flank>AATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAAGGCGGAGGGCACTAAAAGGCCCCTCGAATTTAAAGGCGCAGATCTCAAAAACCAAAAAAGCTACGAAGAAGTTGTCCACTAATGAAATGTGTAAAATTTTATGACAAATATTTTACCAGCTTACAAAATTATTGTATCTTCAAAGGCAACTGAGATAACCAGGCTTAAAGTAACGTCATCTAAATATTCTTTTTTTTTTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAATCCTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCATGTCATTGCTTTCCTTCGTTTTGTGTTCCTGGAGTATAAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTGGAGGCAAATTTTTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAACCGAGAGATTCAGAAATTCGCGCCGCCTAGGACCCTCTTAGTTTCCTACACTCTCTCGCCGCTTCCCGAGAAGAAGAAGAAGAAGAAGCCGTTGAGAGGGGGGGGGGGGGCTTCTCCTTCTTCTTTTTCTTTTTCTTCTTTTCCGGAGACACCAATGTTTTATATACACATTCCACGACACATTTCACCACCACCACACATTTTCCACCCATCATTTTTATTCTTATTTTCCCTTTTTTTGTATTGCTCAAAATCTTTAATTGCAATTATCTCAATTCCTAGAATAGCTACCAAAAAGTAATTAATTATGAAAATTTATAA</canonical>
            <polymorphic>AAGAAGGCGGAGGGCACTAAAAGGCCCCTCGAATTTAAAGGCGCAGATCTCAAAAACCAAAAAAGCTACGAAGAAGTTGTCCACTAATGAAATGTGTAAAATTTTATGACAAATATTTTACCAGCTTACAAAATTATTGTATCTTCAAAGGCAACTGAGATAACCAGGCTTAAAGTAACGTCATCTAAATATTCTTTTTTTTTTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAATCCTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCATGTCATTGCTTTCCTTCGTTTTGTGTTCCTGGAGTATAAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTCRAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTGGAGGCAAATTTTTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAACCGAGAGATTCAGAAATTCGCGCCGCCTAGGACCCTCTTAGTTTCCTACACTCTCTCGCCGCTTCCCGAGAAGAAGAAGAAGAAGAAGCCGTTGAGAGGGGGGGGGGGGGCTTCTCCTTCTTCTTTTTCTTTTTCTTCTTTTCCGGAGACACCAATGTTTTATATACACATTCCACGACACATTTCACCACCACCACACATTTTCCACCCATCATTTTTATTCTTATTTTCCCTTTTTTTGTATTGCTCAAAATCTTTAATTGCAATTATCTCAATTCCTAGAATAGCTACCAAAAAGTAATTAATTATGAAAATTTATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>348 298 68 58 56 47 44 31 22 13 9 6</canonical_bands>
                <polymorphic_bands>348 298 68 58 56 50 47 31 22 13 9</polymorphic_bands>
            </assay>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 416 53 30</canonical_bands>
                <polymorphic_bands>554 416 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACATTTTCCCAATTATTACACC</pcr_primer_p1>
		<pcr_primer_p2>CAGGGATTTTAGGCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTG</canonical_amplicon>
		<polymorphic_amplicon>TACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTCRAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2647</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>29332</contig_pos>
        <strand>+</strand>
        <context>TAGGTCATTT[G/T]TATCCCGTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTT</left_flank>
        <right_flank>TATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTAAAAATAAGGTGCCTCTAGGCGCGGCACCCGTAAGAAGGCGGAGGGCACTAAAAGGCCCCTCGAATTTAAAGGCGCAGATCTCAAAAACCAAAAAAGCTACGAAGAAGTTGTCCACTAATGAAATGTGTAAAATTTTATGACAAATATTTTACCAGCTTACAAAATTATTGTATCTTCAAAGGCAACTGAGATAACCAGGCTTAAAGTAACGTCATCTAAATATTCTTTTTTTTTTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAATCCTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCATGTCATTGCTTTCCTTCGTTTTGTGTTCCTGGAGTATAAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTGGAGGCAAATTTTTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAACCGAGAGATTCAGAAATTCGCGCCGCCTAGGACCCTCTTAGTTTCCTACACTCTCTCGCCGCTTCCCGAGAAGAAGAAGAAGAAGAAGCCGTTGAGAGGGGGGGGGGGGGCTTCTCCTTCTTCTTTTTCTTTTTCTTCTTTTCCGGAGACACCAATGTTTTATATACACATTCCACGACACATTTCACCACCACCACACATTTTCCACCCATCATTTTTATTCTTATTTTCCCTTTTTTTGTATTGCTCAAAATCTTTAATTGCAATTATCTCAATTCCTAGAAT</canonical>
            <polymorphic>CTTTAAAAATAAGGTGCCTCTAGGCGCGGCACCCGTAAGAAGGCGGAGGGCACTAAAAGGCCCCTCGAATTTAAAGGCGCAGATCTCAAAAACCAAAAAAGCTACGAAGAAGTTGTCCACTAATGAAATGTGTAAAATTTTATGACAAATATTTTACCAGCTTACAAAATTATTGTATCTTCAAAGGCAACTGAGATAACCAGGCTTAAAGTAACGTCATCTAAATATTCTTTTTTTTTTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAATCCTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCATGTCATTGCTTTCCTTCGTTTTGTGTTCCTGGAGTATAAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTKTATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTGGAGGCAAATTTTTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAACCGAGAGATTCAGAAATTCGCGCCGCCTAGGACCCTCTTAGTTTCCTACACTCTCTCGCCGCTTCCCGAGAAGAAGAAGAAGAAGAAGCCGTTGAGAGGGGGGGGGGGGGCTTCTCCTTCTTCTTTTTCTTTTTCTTCTTTTCCGGAGACACCAATGTTTTATATACACATTCCACGACACATTTCACCACCACCACACATTTTCCACCCATCATTTTTATTCTTATTTTCCCTTTTTTTGTATTGCTCAAAATCTTTAATTGCAATTATCTCAATTCCTAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACATTTTCCCAATTATTACACC</pcr_primer_p1>
		<pcr_primer_p2>CAGGGATTTTAGGCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTG</canonical_amplicon>
		<polymorphic_amplicon>TACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTKTATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2649</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>29199</contig_pos>
        <strand>+</strand>
        <context>TTTGTGTTCC[C/T]GGAGTATAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCATTCCATTTTCCACCTCATGTCATTGCTTTCCTTCGTTTTGTGTTCC</left_flank>
        <right_flank>GGAGTATAAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAAAGGCGCATATCTCAAAAACCAAAAAAGCTACAAAAAAGTTATTACCTAATAAAATGTGTAAAAGTAAATTTGACACATTTTTCTAGTTAACCACTCTTTTGTAAATTTTTTGGTTTTTGTGTTATGCGCCTTTAAAAATAAGGTGCCTCTAGGCGCGGCACCCGTAAGAAGGCGGAGGGCACTAAAAGGCCCCTCGAATTTAAAGGCGCAGATCTCAAAAACCAAAAAAGCTACGAAGAAGTTGTCCACTAATGAAATGTGTAAAATTTTATGACAAATATTTTACCAGCTTACAAAATTATTGTATCTTCAAAGGCAACTGAGATAACCAGGCTTAAAGTAACGTCATCTAAATATTCTTTTTTTTTTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAATCCTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCATGTCATTGCTTTCCTTCGTTTTGTGTTCCTGGAGTATAAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTGGAGGCAAATTTTTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAACCGAGAGATTCAGAAATTCGCGCCGCCTAGGACCCTCTTAGTTTCCTACACTCTCTCGCCGCTTCCCGAGAAGAAGAAGAAGAAGAAGCCGTTGAGAGGGGGGGGGGGGGCTTCTCCTTCTTCTTTTTCTTTTTCTTCTTTTCCGGAGACAC</canonical>
            <polymorphic>TTAAAGGCGCATATCTCAAAAACCAAAAAAGCTACAAAAAAGTTATTACCTAATAAAATGTGTAAAAGTAAATTTGACACATTTTTCTAGTTAACCACTCTTTTGTAAATTTTTTGGTTTTTGTGTTATGCGCCTTTAAAAATAAGGTGCCTCTAGGCGCGGCACCCGTAAGAAGGCGGAGGGCACTAAAAGGCCCCTCGAATTTAAAGGCGCAGATCTCAAAAACCAAAAAAGCTACGAAGAAGTTGTCCACTAATGAAATGTGTAAAATTTTATGACAAATATTTTACCAGCTTACAAAATTATTGTATCTTCAAAGGCAACTGAGATAACCAGGCTTAAAGTAACGTCATCTAAATATTCTTTTTTTTTTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAATCCTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCATGTCATTGCTTTCCTTCGTTTTGTGTTCCYGGAGTATAAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTGGAGGCAAATTTTTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAACCGAGAGATTCAGAAATTCGCGCCGCCTAGGACCCTCTTAGTTTCCTACACTCTCTCGCCGCTTCCCGAGAAGAAGAAGAAGAAGAAGCCGTTGAGAGGGGGGGGGGGGGCTTCTCCTTCTTCTTTTTCTTTTTCTTCTTTTCCGGAGACAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>334 299 202 87 78</canonical_bands>
                <polymorphic_bands>377 334 202 87</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAACATTCCCTCTCCTAAT</pcr_primer_p1>
		<pcr_primer_p2>AATTCGACACGGATTTTAGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAATCCTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCATGTCATTGCTTTCCTTCGTTTTGTGTTCCTGGAGTATAAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATT</canonical_amplicon>
		<polymorphic_amplicon>TTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAATCCTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCATGTCATTGCTTTCCTTCGTTTTGTGTTCCYGGAGTATAAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2650</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>29171</contig_pos>
        <strand>+</strand>
        <context>TCCACCTCAT[G/T]TCATTGCTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCAT</left_flank>
        <right_flank>TCATTGCTTTCCTTCGTTTTGTGTTCCTGGAGTATAAACTGTACAGATAG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGAGGGGCGCCTAGAGGCACCTTATTTTTAAAGGCGCATATCTCAAAAACCAAAAAAGCTACAAAAAAGTTATTACCTAATAAAATGTGTAAAAGTAAATTTGACACATTTTTCTAGTTAACCACTCTTTTGTAAATTTTTTGGTTTTTGTGTTATGCGCCTTTAAAAATAAGGTGCCTCTAGGCGCGGCACCCGTAAGAAGGCGGAGGGCACTAAAAGGCCCCTCGAATTTAAAGGCGCAGATCTCAAAAACCAAAAAAGCTACGAAGAAGTTGTCCACTAATGAAATGTGTAAAATTTTATGACAAATATTTTACCAGCTTACAAAATTATTGTATCTTCAAAGGCAACTGAGATAACCAGGCTTAAAGTAACGTCATCTAAATATTCTTTTTTTTTTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAATCCTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCATGTCATTGCTTTCCTTCGTTTTGTGTTCCTGGAGTATAAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTGGAGGCAAATTTTTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAACCGAGAGATTCAGAAATTCGCGCCGCCTAGGACCCTCTTAGTTTCCTACACTCTCTCGCCGCTTCCCGAGAAGAAGAAGAAGAAGAAGCCGTTGAGAGGGGGGGGGGGGGCTTCTCCTTCTTCT</canonical>
            <polymorphic>CGGAGGGGCGCCTAGAGGCACCTTATTTTTAAAGGCGCATATCTCAAAAACCAAAAAAGCTACAAAAAAGTTATTACCTAATAAAATGTGTAAAAGTAAATTTGACACATTTTTCTAGTTAACCACTCTTTTGTAAATTTTTTGGTTTTTGTGTTATGCGCCTTTAAAAATAAGGTGCCTCTAGGCGCGGCACCCGTAAGAAGGCGGAGGGCACTAAAAGGCCCCTCGAATTTAAAGGCGCAGATCTCAAAAACCAAAAAAGCTACGAAGAAGTTGTCCACTAATGAAATGTGTAAAATTTTATGACAAATATTTTACCAGCTTACAAAATTATTGTATCTTCAAAGGCAACTGAGATAACCAGGCTTAAAGTAACGTCATCTAAATATTCTTTTTTTTTTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAATCCTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCATKTCATTGCTTTCCTTCGTTTTGTGTTCCTGGAGTATAAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTGGAGGCAAATTTTTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAACCGAGAGATTCAGAAATTCGCGCCGCCTAGGACCCTCTTAGTTTCCTACACTCTCTCGCCGCTTCCCGAGAAGAAGAAGAAGAAGAAGCCGTTGAGAGGGGGGGGGGGGGCTTCTCCTTCTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>497 315 111 77</canonical_bands>
                <polymorphic_bands>574 315 111</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAACATTCCCTCTCCTAAT</pcr_primer_p1>
		<pcr_primer_p2>AATTCGACACGGATTTTAGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAATCCTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCATGTCATTGCTTTCCTTCGTTTTGTGTTCCTGGAGTATAAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATT</canonical_amplicon>
		<polymorphic_amplicon>TTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAATCCTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCATKTCATTGCTTTCCTTCGTTTTGTGTTCCTGGAGTATAAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2651</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>29109</contig_pos>
        <strand>+</strand>
        <context>ATCTAGAATY[C/T]TCCCAAAATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCTTTTTTTTTTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAATC</left_flank>
        <right_flank>TCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGTAGCTCTTCTGGTTTTTGAGATATGCGTCTTTACATAAGCGCGGCGCCCGAAAAAACGGAGGGGCGCCTAGAGGCACCTTATTTTTAAAGGCGCATATCTCAAAAACCAAAAAAGCTACAAAAAAGTTATTACCTAATAAAATGTGTAAAAGTAAATTTGACACATTTTTCTAGTTAACCACTCTTTTGTAAATTTTTTGGTTTTTGTGTTATGCGCCTTTAAAAATAAGGTGCCTCTAGGCGCGGCACCCGTAAGAAGGCGGAGGGCACTAAAAGGCCCCTCGAATTTAAAGGCGCAGATCTCAAAAACCAAAAAAGCTACGAAGAAGTTGTCCACTAATGAAATGTGTAAAATTTTATGACAAATATTTTACCAGCTTACAAAATTATTGTATCTTCAAAGGCAACTGAGATAACCAGGCTTAAAGTAACGTCATCTAAATATTCTTTTTTTTTTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAATCCTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCATGTCATTGCTTTCCTTCGTTTTGTGTTCCTGGAGTATAAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTGGAGGCAAATTTTTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAACCGAGAGATTCAGAAATTCGCGCCGCCTAGGACCCTCTTAGTTTCCTACACTCTCTCGCCGC</canonical>
            <polymorphic>TTTTTGTAGCTCTTCTGGTTTTTGAGATATGCGTCTTTACATAAGCGCGGCGCCCGAAAAAACGGAGGGGCGCCTAGAGGCACCTTATTTTTAAAGGCGCATATCTCAAAAACCAAAAAAGCTACAAAAAAGTTATTACCTAATAAAATGTGTAAAAGTAAATTTGACACATTTTTCTAGTTAACCACTCTTTTGTAAATTTTTTGGTTTTTGTGTTATGCGCCTTTAAAAATAAGGTGCCTCTAGGCGCGGCACCCGTAAGAAGGCGGAGGGCACTAAAAGGCCCCTCGAATTTAAAGGCGCAGATCTCAAAAACCAAAAAAGCTACGAAGAAGTTGTCCACTAATGAAATGTGTAAAATTTTATGACAAATATTTTACCAGCTTACAAAATTATTGTATCTTCAAAGGCAACTGAGATAACCAGGCTTAAAGTAACGTCATCTAAATATTCTTTTTTTTTTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAATCYTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCATGTCATTGCTTTCCTTCGTTTTGTGTTCCTGGAGTATAAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTGGAGGCAAATTTTTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAACCGAGAGATTCAGAAATTCGCGCCGCCTAGGACCCTCTTAGTTTCCTACACTCTCTCGCCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGACCTAATTTTTCCACAA</pcr_primer_p1>
		<pcr_primer_p2>GAACACAAAACGAAGGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>699</pcr_amplicon_size>
		<canonical_amplicon>CCTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCATGTCATTGCTTTCCTTCGTTTTGTGTTC</canonical_amplicon>
		<polymorphic_amplicon>CYTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCATGTCATTGCTTTCCTTCGTTTTGTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2652</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>29108</contig_pos>
        <strand></strand>
        <context>AATCTAGAAT[C/T]YTCCCAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTCTTTTTTTTTTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAAT</left_flank>
        <right_flank>CTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCAT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTGTAGCTCTTCTGGTTTTTGAGATATGCGTCTTTACATAAGCGCGGCGCCCGAAAAAACGGAGGGGCGCCTAGAGGCACCTTATTTTTAAAGGCGCATATCTCAAAAACCAAAAAAGCTACAAAAAAGTTATTACCTAATAAAATGTGTAAAAGTAAATTTGACACATTTTTCTAGTTAACCACTCTTTTGTAAATTTTTTGGTTTTTGTGTTATGCGCCTTTAAAAATAAGGTGCCTCTAGGCGCGGCACCCGTAAGAAGGCGGAGGGCACTAAAAGGCCCCTCGAATTTAAAGGCGCAGATCTCAAAAACCAAAAAAGCTACGAAGAAGTTGTCCACTAATGAAATGTGTAAAATTTTATGACAAATATTTTACCAGCTTACAAAATTATTGTATCTTCAAAGGCAACTGAGATAACCAGGCTTAAAGTAACGTCATCTAAATATTCTTTTTTTTTTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAATCCTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCATGTCATTGCTTTCCTTCGTTTTGTGTTCCTGGAGTATAAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTGGAGGCAAATTTTTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAACCGAGAGATTCAGAAATTCGCGCCGCCTAGGACCCTCTTAGTTTCCTACACTCTCTCGCCG</canonical>
            <polymorphic>TTTTTTGTAGCTCTTCTGGTTTTTGAGATATGCGTCTTTACATAAGCGCGGCGCCCGAAAAAACGGAGGGGCGCCTAGAGGCACCTTATTTTTAAAGGCGCATATCTCAAAAACCAAAAAAGCTACAAAAAAGTTATTACCTAATAAAATGTGTAAAAGTAAATTTGACACATTTTTCTAGTTAACCACTCTTTTGTAAATTTTTTGGTTTTTGTGTTATGCGCCTTTAAAAATAAGGTGCCTCTAGGCGCGGCACCCGTAAGAAGGCGGAGGGCACTAAAAGGCCCCTCGAATTTAAAGGCGCAGATCTCAAAAACCAAAAAAGCTACGAAGAAGTTGTCCACTAATGAAATGTGTAAAATTTTATGACAAATATTTTACCAGCTTACAAAATTATTGTATCTTCAAAGGCAACTGAGATAACCAGGCTTAAAGTAACGTCATCTAAATATTCTTTTTTTTTTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAATYCTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCATGTCATTGCTTTCCTTCGTTTTGTGTTCCTGGAGTATAAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTGGAGGCAAATTTTTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAACCGAGAGATTCAGAAATTCGCGCCGCCTAGGACCCTCTTAGTTTCCTACACTCTCTCGCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>496 450 54</canonical_bands>
                <polymorphic_bands>946 54</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>496 450 54</canonical_bands>
                <polymorphic_bands>946 54</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGACCTAATTTTTCCACAA</pcr_primer_p1>
		<pcr_primer_p2>GAACACAAAACGAAGGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>699</pcr_amplicon_size>
		<canonical_amplicon>TCCTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCATGTCATTGCTTTCCTTCGTTTTGTGTTC</canonical_amplicon>
		<polymorphic_amplicon>TYCTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCATGTCATTGCTTTCCTTCGTTTTGTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2655</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>30577</contig_pos>
        <strand>+</strand>
        <context>TTTGGAGCCT[A/G]TTTTTCTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTAATTGGTCCGAAAATTATATAGATTGATTCGAAATATTTTGGAGCCT</left_flank>
        <right_flank>TTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCACC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTTTGAATTTTAATTTTAAGTATTTTAGGGCCTGAGATAACTAGACTTAAAGCGGTGATATCTGAAATTTTGTTTTTTTAAACTTCATCGTTGGTCAATTTTTTAAAAAGTTATATAGATCGATTGGAAATTTTCTGAAGACTGTTTTTCTTTTTTGAAAACCTCAAAAATTGTCATTTTAGGACGTTTTTACCCCGAAAAAGTGAGCTAAACTGACCCAGAGCGCGCTGAAAGCGCAATAGCCAAGGAAAGGGAGAGTGGCCACTTTGAGCTTGATTATCTCCATTTGTAGCAAAGATACAGAAAAGTTGTCAACTAACAAAATGTATATAATTAAATTTACAACATTTTTCGAATTTATTTTGTTATTGTCTATTTTTTAGAAACTGAGATAACTATTGTAAAGCAAGGCGACTTCAATTTCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATTGATTCGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGGGGAGAATAATTGTTATTTTAGGTCATTTTTAATGTTATGTT</canonical>
            <polymorphic>CAGTTTGAATTTTAATTTTAAGTATTTTAGGGCCTGAGATAACTAGACTTAAAGCGGTGATATCTGAAATTTTGTTTTTTTAAACTTCATCGTTGGTCAATTTTTTAAAAAGTTATATAGATCGATTGGAAATTTTCTGAAGACTGTTTTTCTTTTTTGAAAACCTCAAAAATTGTCATTTTAGGACGTTTTTACCCCGAAAAAGTGAGCTAAACTGACCCAGAGCGCGCTGAAAGCGCAATAGCCAAGGAAAGGGAGAGTGGCCACTTTGAGCTTGATTATCTCCATTTGTAGCAAAGATACAGAAAAGTTGTCAACTAACAAAATGTATATAATTAAATTTACAACATTTTTCGAATTTATTTTGTTATTGTCTATTTTTTAGAAACTGAGATAACTATTGTAAAGCAAGGCGACTTCAATTTCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATTGATTCGAAATATTTTGGAGCCTRTTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGGGGAGAATAATTGTTATTTTAGGTCATTTTTAATGTTATGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGACTAATTGGTCCGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCTAAAGGTTGGTGTCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>514</pcr_amplicon_size>
		<canonical_amplicon>CTAGACTAATTGGTCCGAAAATTATATAGATTGATTCGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGG</canonical_amplicon>
		<polymorphic_amplicon>CTAGACTAATTGGTCCGAAAATTATATAGATTGATTCGAAATATTTTGGAGCCTRTTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2656</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>30559</contig_pos>
        <strand>+</strand>
        <context>TAGATYGATT[C/T]GAAATATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATTGATT</left_flank>
        <right_flank>GAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATTTTCTATGTTTTAACAGTTTGAATTTTAATTTTAAGTATTTTAGGGCCTGAGATAACTAGACTTAAAGCGGTGATATCTGAAATTTTGTTTTTTTAAACTTCATCGTTGGTCAATTTTTTAAAAAGTTATATAGATCGATTGGAAATTTTCTGAAGACTGTTTTTCTTTTTTGAAAACCTCAAAAATTGTCATTTTAGGACGTTTTTACCCCGAAAAAGTGAGCTAAACTGACCCAGAGCGCGCTGAAAGCGCAATAGCCAAGGAAAGGGAGAGTGGCCACTTTGAGCTTGATTATCTCCATTTGTAGCAAAGATACAGAAAAGTTGTCAACTAACAAAATGTATATAATTAAATTTACAACATTTTTCGAATTTATTTTGTTATTGTCTATTTTTTAGAAACTGAGATAACTATTGTAAAGCAAGGCGACTTCAATTTCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATTGATTCGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGGGGAGAATAATTGTTATTTTAGGT</canonical>
            <polymorphic>TGATTTTCTATGTTTTAACAGTTTGAATTTTAATTTTAAGTATTTTAGGGCCTGAGATAACTAGACTTAAAGCGGTGATATCTGAAATTTTGTTTTTTTAAACTTCATCGTTGGTCAATTTTTTAAAAAGTTATATAGATCGATTGGAAATTTTCTGAAGACTGTTTTTCTTTTTTGAAAACCTCAAAAATTGTCATTTTAGGACGTTTTTACCCCGAAAAAGTGAGCTAAACTGACCCAGAGCGCGCTGAAAGCGCAATAGCCAAGGAAAGGGAGAGTGGCCACTTTGAGCTTGATTATCTCCATTTGTAGCAAAGATACAGAAAAGTTGTCAACTAACAAAATGTATATAATTAAATTTACAACATTTTTCGAATTTATTTTGTTATTGTCTATTTTTTAGAAACTGAGATAACTATTGTAAAGCAAGGCGACTTCAATTTCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATTGATTYGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGGGGAGAATAATTGTTATTTTAGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 372 127</canonical_bands>
                <polymorphic_bands>628 372</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>291 232 209 141 127</canonical_bands>
                <polymorphic_bands>418 232 209 141</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>496 296 208</canonical_bands>
                <polymorphic_bands>792 208</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCATTTTTGGCAACTTTAC</pcr_primer_p1>
		<pcr_primer_p2>TGAAAAGGCCTTAAAACTTATATT</pcr_primer_p2>
		<pcr_amplicon_size>124</pcr_amplicon_size>
		<canonical_amplicon>TCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATTGATTCGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCA</canonical_amplicon>
		<polymorphic_amplicon>TCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATTGATTYGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2657</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>30554</contig_pos>
        <strand>+</strand>
        <context>TTATATAGAT[C/T]GATTYGAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGAT</left_flank>
        <right_flank>GATTCGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTGATTTTCTATGTTTTAACAGTTTGAATTTTAATTTTAAGTATTTTAGGGCCTGAGATAACTAGACTTAAAGCGGTGATATCTGAAATTTTGTTTTTTTAAACTTCATCGTTGGTCAATTTTTTAAAAAGTTATATAGATCGATTGGAAATTTTCTGAAGACTGTTTTTCTTTTTTGAAAACCTCAAAAATTGTCATTTTAGGACGTTTTTACCCCGAAAAAGTGAGCTAAACTGACCCAGAGCGCGCTGAAAGCGCAATAGCCAAGGAAAGGGAGAGTGGCCACTTTGAGCTTGATTATCTCCATTTGTAGCAAAGATACAGAAAAGTTGTCAACTAACAAAATGTATATAATTAAATTTACAACATTTTTCGAATTTATTTTGTTATTGTCTATTTTTTAGAAACTGAGATAACTATTGTAAAGCAAGGCGACTTCAATTTCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATTGATTCGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGGGGAGAATAATTGTTATTT</canonical>
            <polymorphic>AAATTTGATTTTCTATGTTTTAACAGTTTGAATTTTAATTTTAAGTATTTTAGGGCCTGAGATAACTAGACTTAAAGCGGTGATATCTGAAATTTTGTTTTTTTAAACTTCATCGTTGGTCAATTTTTTAAAAAGTTATATAGATCGATTGGAAATTTTCTGAAGACTGTTTTTCTTTTTTGAAAACCTCAAAAATTGTCATTTTAGGACGTTTTTACCCCGAAAAAGTGAGCTAAACTGACCCAGAGCGCGCTGAAAGCGCAATAGCCAAGGAAAGGGAGAGTGGCCACTTTGAGCTTGATTATCTCCATTTGTAGCAAAGATACAGAAAAGTTGTCAACTAACAAAATGTATATAATTAAATTTACAACATTTTTCGAATTTATTTTGTTATTGTCTATTTTTTAGAAACTGAGATAACTATTGTAAAGCAAGGCGACTTCAATTTCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATYGATTCGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGGGGAGAATAATTGTTATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCATTTTTGGCAACTTTAC</pcr_primer_p1>
		<pcr_primer_p2>TGAAAAGGCCTTAAAACTTATATT</pcr_primer_p2>
		<pcr_amplicon_size>124</pcr_amplicon_size>
		<canonical_amplicon>TCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATTGATTCGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCA</canonical_amplicon>
		<polymorphic_amplicon>TCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATYGATTCGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2658</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>30497</contig_pos>
        <strand>+</strand>
        <context>AAGGCGACTT[C/T]AATTTCCATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGTCTATTTTTTAGAAACTGAGATAACTATTGTAAAGCAAGGCGACTT</left_flank>
        <right_flank>AATTTCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTAT</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCGTAGCTCAAAAACCAGAAAAGCTACAAAACAGTTATCAACTAGTAGAATGTGTAAAATTTGATTTTCTATGTTTTAACAGTTTGAATTTTAATTTTAAGTATTTTAGGGCCTGAGATAACTAGACTTAAAGCGGTGATATCTGAAATTTTGTTTTTTTAAACTTCATCGTTGGTCAATTTTTTAAAAAGTTATATAGATCGATTGGAAATTTTCTGAAGACTGTTTTTCTTTTTTGAAAACCTCAAAAATTGTCATTTTAGGACGTTTTTACCCCGAAAAAGTGAGCTAAACTGACCCAGAGCGCGCTGAAAGCGCAATAGCCAAGGAAAGGGAGAGTGGCCACTTTGAGCTTGATTATCTCCATTTGTAGCAAAGATACAGAAAAGTTGTCAACTAACAAAATGTATATAATTAAATTTACAACATTTTTCGAATTTATTTTGTTATTGTCTATTTTTTAGAAACTGAGATAACTATTGTAAAGCAAGGCGACTTCAATTTCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATTGATTCGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAG</canonical>
            <polymorphic>CGCGTAGCTCAAAAACCAGAAAAGCTACAAAACAGTTATCAACTAGTAGAATGTGTAAAATTTGATTTTCTATGTTTTAACAGTTTGAATTTTAATTTTAAGTATTTTAGGGCCTGAGATAACTAGACTTAAAGCGGTGATATCTGAAATTTTGTTTTTTTAAACTTCATCGTTGGTCAATTTTTTAAAAAGTTATATAGATCGATTGGAAATTTTCTGAAGACTGTTTTTCTTTTTTGAAAACCTCAAAAATTGTCATTTTAGGACGTTTTTACCCCGAAAAAGTGAGCTAAACTGACCCAGAGCGCGCTGAAAGCGCAATAGCCAAGGAAAGGGAGAGTGGCCACTTTGAGCTTGATTATCTCCATTTGTAGCAAAGATACAGAAAAGTTGTCAACTAACAAAATGTATATAATTAAATTTACAACATTTTTCGAATTTATTTTGTTATTGTCTATTTTTTAGAAACTGAGATAACTATTGTAAAGCAAGGCGACTTYAATTTCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATTGATTCGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGCTAAACTGACCCAGAG</pcr_primer_p1>
		<pcr_primer_p2>TGAAAAGGCCTTAAAACTTATATT</pcr_primer_p2>
		<pcr_amplicon_size>343</pcr_amplicon_size>
		<canonical_amplicon>TGAGCTAAACTGACCCAGAGCGCGCTGAAAGCGCAATAGCCAAGGAAAGGGAGAGTGGCCACTTTGAGCTTGATTATCTCCATTTGTAGCAAAGATACAGAAAAGTTGTCAACTAACAAAATGTATATAATTAAATTTACAACATTTTTCGAATTTATTTTGTTATTGTCTATTTTTTAGAAACTGAGATAACTATTGTAAAGCAAGGCGACTTCAATTTCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATTGATTCGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCA</canonical_amplicon>
		<polymorphic_amplicon>TGAGCTAAACTGACCCAGAGCGCGCTGAAAGCGCAATAGCCAAGGAAAGGGAGAGTGGCCACTTTGAGCTTGATTATCTCCATTTGTAGCAAAGATACAGAAAAGTTGTCAACTAACAAAATGTATATAATTAAATTTACAACATTTTTCGAATTTATTTTGTTATTGTCTATTTTTTAGAAACTGAGATAACTATTGTAAAGCAAGGCGACTTYAATTTCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATTGATTCGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2659</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>31000</contig_pos>
        <strand>+</strand>
        <context>ATAATTAGAG[C/T]TAAAGAAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAG</left_flank>
        <right_flank>TAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGGGGAGAATAATTGTT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATTGATTCGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGGGGAGAATAATTGTTATTTTAGGTCATTTTTAATGTTATGTTTCAGGCTAAAATTTTAGCATATGTGGCAAAAAGTTGAAAACCTGGTGTTCCCACAAAACTTTGTCTCTTTCTCCTTCTTCTATTCAACTTTTTTACATGCCTGACCGAGTTTTTGTGCTGCACATCGTCATAAAAGTTCATTCTATACAGACGAAGAGACGACACGCTTGAATGTTTAACGCTCTTTTTCATGTCGTCCGTTCTGTCGCTTTTCATCATCATTACCCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCATTCAATTTAATCTTTAATTTATATGTGTTTCTGTTGTTCTCCCTAGTACTACTAGTGCAACTACTATAGTTAATAGCGGGAACATTTCCCGTTAATTAGGGAGAGAGAGG</canonical>
            <polymorphic>TTCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATTGATTCGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGYTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGGGGAGAATAATTGTTATTTTAGGTCATTTTTAATGTTATGTTTCAGGCTAAAATTTTAGCATATGTGGCAAAAAGTTGAAAACCTGGTGTTCCCACAAAACTTTGTCTCTTTCTCCTTCTTCTATTCAACTTTTTTACATGCCTGACCGAGTTTTTGTGCTGCACATCGTCATAAAAGTTCATTCTATACAGACGAAGAGACGACACGCTTGAATGTTTAACGCTCTTTTTCATGTCGTCCGTTCTGTCGCTTTTCATCATCATTACCCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCATTCAATTTAATCTTTAATTTATATGTGTTTCTGTTGTTCTCCCTAGTACTACTAGTGCAACTACTATAGTTAATAGCGGGAACATTTCCCGTTAATTAGGGAGAGAGAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>501 328 171</canonical_bands>
                <polymorphic_bands>829 171</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>418 328 83 73 44 29 25</canonical_bands>
                <polymorphic_bands>418 411 73 44 29 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATATAAGTTTTAAGGCCTTTTC</pcr_primer_p1>
		<pcr_primer_p2>AAAATAACAATTATTCTCCCCTAA</pcr_primer_p2>
		<pcr_amplicon_size>456</pcr_amplicon_size>
		<canonical_amplicon>AAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGGGGAGAATAATTGTTATTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGYTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGGGGAGAATAATTGTTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2660</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>30976</contig_pos>
        <strand>+</strand>
        <context>ACTGTATCTT[C/T]AATGGKAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTT</left_flank>
        <right_flank>AATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACC</right_flank>
        <qual_score>146</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGTAAAGCAAGGCGACTTCAATTTCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATTGATTCGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGGGGAGAATAATTGTTATTTTAGGTCATTTTTAATGTTATGTTTCAGGCTAAAATTTTAGCATATGTGGCAAAAAGTTGAAAACCTGGTGTTCCCACAAAACTTTGTCTCTTTCTCCTTCTTCTATTCAACTTTTTTACATGCCTGACCGAGTTTTTGTGCTGCACATCGTCATAAAAGTTCATTCTATACAGACGAAGAGACGACACGCTTGAATGTTTAACGCTCTTTTTCATGTCGTCCGTTCTGTCGCTTTTCATCATCATTACCCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCATTCAATTTAATCTTTAATTTATATGTGTTTCTGTTGTTCTCCCTAGTACTACTAGTGCAACTACTATAGTTAATAGCGGGAACATT</canonical>
            <polymorphic>ATTGTAAAGCAAGGCGACTTCAATTTCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATTGATTCGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTYAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGGGGAGAATAATTGTTATTTTAGGTCATTTTTAATGTTATGTTTCAGGCTAAAATTTTAGCATATGTGGCAAAAAGTTGAAAACCTGGTGTTCCCACAAAACTTTGTCTCTTTCTCCTTCTTCTATTCAACTTTTTTACATGCCTGACCGAGTTTTTGTGCTGCACATCGTCATAAAAGTTCATTCTATACAGACGAAGAGACGACACGCTTGAATGTTTAACGCTCTTTTTCATGTCGTCCGTTCTGTCGCTTTTCATCATCATTACCCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCATTCAATTTAATCTTTAATTTATATGTGTTTCTGTTGTTCTCCCTAGTACTACTAGTGCAACTACTATAGTTAATAGCGGGAACATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>188 144 123 121 93 90 67 63 56 17 16 15 7</canonical_bands>
                <polymorphic_bands>188 144 123 121 107 93 67 63 56 16 15 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATATAAGTTTTAAGGCCTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CCTAAAGGTTGGTGTCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>AAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGG</canonical_amplicon>
		<polymorphic_amplicon>AAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTYAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2663</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>31072</contig_pos>
        <strand>+</strand>
        <context>TTTTTAATGT[A/T]ATGTTTCAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACACCAACCTTTAGGGGAGAATAATTGTTATTTTAGGTCATTTTTAATGT</left_flank>
        <right_flank>ATGTTTCAGGCTAAAATTTTAGCATATGTGGCAAAAAGTTGAAAACCTGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGGGGAGAATAATTGTTATTTTAGGTCATTTTTAATGTTATGTTTCAGGCTAAAATTTTAGCATATGTGGCAAAAAGTTGAAAACCTGGTGTTCCCACAAAACTTTGTCTCTTTCTCCTTCTTCTATTCAACTTTTTTACATGCCTGACCGAGTTTTTGTGCTGCACATCGTCATAAAAGTTCATTCTATACAGACGAAGAGACGACACGCTTGAATGTTTAACGCTCTTTTTCATGTCGTCCGTTCTGTCGCTTTTCATCATCATTACCCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCATTCAATTTAATCTTTAATTTATATGTGTTTCTGTTGTTCTCCCTAGTACTACTAGTGCAACTACTATAGTTAATAGCGGGAACATTTCCCGTTAATTAGGGAGAGAGAGGGACACTTTGTCTCCGGCGAGATTTATGGTGGTTTCGATATAATTGCTCATTCTACAGAATCGTAATCTAGTC</canonical>
            <polymorphic>GCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGGGGAGAATAATTGTTATTTTAGGTCATTTTTAATGTWATGTTTCAGGCTAAAATTTTAGCATATGTGGCAAAAAGTTGAAAACCTGGTGTTCCCACAAAACTTTGTCTCTTTCTCCTTCTTCTATTCAACTTTTTTACATGCCTGACCGAGTTTTTGTGCTGCACATCGTCATAAAAGTTCATTCTATACAGACGAAGAGACGACACGCTTGAATGTTTAACGCTCTTTTTCATGTCGTCCGTTCTGTCGCTTTTCATCATCATTACCCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCATTCAATTTAATCTTTAATTTATATGTGTTTCTGTTGTTCTCCCTAGTACTACTAGTGCAACTACTATAGTTAATAGCGGGAACATTTCCCGTTAATTAGGGAGAGAGAGGGACACTTTGTCTCCGGCGAGATTTATGGTGGTTTCGATATAATTGCTCATTCTACAGAATCGTAATCTAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATATAAGTTTTAAGGCCTTTTC</pcr_primer_p1>
		<pcr_primer_p2>ACCAGGTTTTCAACTTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>524</pcr_amplicon_size>
		<canonical_amplicon>AAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGGGGAGAATAATTGTTATTTTAGGTCATTTTTAATGTTATGTTTCAGGCTAAAATTTTAGCATATGTGGCAAAAAGTTGAAAACCTGGT</canonical_amplicon>
		<polymorphic_amplicon>AAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGGGGAGAATAATTGTTATTTTAGGTCATTTTTAATGTWATGTTTCAGGCTAAAATTTTAGCATATGTGGCAAAAAGTTGAAAACCTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2664</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>31124</contig_pos>
        <strand>+</strand>
        <context>AAAACCTGGT[G/T]TTCCCACAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTTTCAGGCTAAAATTTTAGCATATGTGGCAAAAAGTTGAAAACCTGGT</left_flank>
        <right_flank>TTCCCACAAAACTTTGTCTCTTTCTCCTTCTTCTATTCAACTTTTTTACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGGGGAGAATAATTGTTATTTTAGGTCATTTTTAATGTTATGTTTCAGGCTAAAATTTTAGCATATGTGGCAAAAAGTTGAAAACCTGGTGTTCCCACAAAACTTTGTCTCTTTCTCCTTCTTCTATTCAACTTTTTTACATGCCTGACCGAGTTTTTGTGCTGCACATCGTCATAAAAGTTCATTCTATACAGACGAAGAGACGACACGCTTGAATGTTTAACGCTCTTTTTCATGTCGTCCGTTCTGTCGCTTTTCATCATCATTACCCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCATTCAATTTAATCTTTAATTTATATGTGTTTCTGTTGTTCTCCCTAGTACTACTAGTGCAACTACTATAGTTAATAGCGGGAACATTTCCCGTTAATTAGGGAGAGAGAGGGACACTTTGTCTCCGGCGAGATTTATGGTGGTTTCGATATAATTGCTCATTCTACAGAATCGTAATCTAGTCAAATACAAATTTCAGGTTCCAGGATCCAGGAACTGCAATATTAAATTTTGCA</canonical>
            <polymorphic>ACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGGGGAGAATAATTGTTATTTTAGGTCATTTTTAATGTTATGTTTCAGGCTAAAATTTTAGCATATGTGGCAAAAAGTTGAAAACCTGGTKTTCCCACAAAACTTTGTCTCTTTCTCCTTCTTCTATTCAACTTTTTTACATGCCTGACCGAGTTTTTGTGCTGCACATCGTCATAAAAGTTCATTCTATACAGACGAAGAGACGACACGCTTGAATGTTTAACGCTCTTTTTCATGTCGTCCGTTCTGTCGCTTTTCATCATCATTACCCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCATTCAATTTAATCTTTAATTTATATGTGTTTCTGTTGTTCTCCCTAGTACTACTAGTGCAACTACTATAGTTAATAGCGGGAACATTTCCCGTTAATTAGGGAGAGAGAGGGACACTTTGTCTCCGGCGAGATTTATGGTGGTTTCGATATAATTGCTCATTCTACAGAATCGTAATCTAGTCAAATACAAATTTCAGGTTCCAGGATCCAGGAACTGCAATATTAAATTTTGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>176 121 98 94 78 64 62 57 42 42 36 30 30 26 22 7 6 5 4</canonical_bands>
                <polymorphic_bands>176 121 98 94 78 64 62 57 42 42 36 30 30 28 26 7 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACCTTTAGGGGAGAATAATTG</pcr_primer_p1>
		<pcr_primer_p2>ATGAAAAAGAGCGTTAAACATT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AACCTTTAGGGGAGAATAATTGTTATTTTAGGTCATTTTTAATGTTATGTTTCAGGCTAAAATTTTAGCATATGTGGCAAAAAGTTGAAAACCTGGTGTTCCCACAAAACTTTGTCTCTTTCTCCTTCTTCTATTCAACTTTTTTACATGCCTGACCGAGTTTTTGTGCTGCACATCGTCATAAAAGTTCATTCTATACAGACGAAGAGACGACACGCTTGAATGTTTAACGCTCTTTTTCAT</canonical_amplicon>
		<polymorphic_amplicon>AACCTTTAGGGGAGAATAATTGTTATTTTAGGTCATTTTTAATGTTATGTTTCAGGCTAAAATTTTAGCATATGTGGCAAAAAGTTGAAAACCTGGTKTTCCCACAAAACTTTGTCTCTTTCTCCTTCTTCTATTCAACTTTTTTACATGCCTGACCGAGTTTTTGTGCTGCACATCGTCATAAAAGTTCATTCTATACAGACGAAGAGACGACACGCTTGAATGTTTAACGCTCTTTTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2665</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>32147</contig_pos>
        <strand>+</strand>
        <context>GATTATATCT[A/G]AACCAAATTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTTGAAAGTCACATAGATTGATTTATAAACAAATGTTGATTATATCT</left_flank>
        <right_flank>AACCAAATTCAAGTCTAGTCAAGGCTTTCCAGCTTCAAACTTCAACCTCG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGCTCCAAGCATTACATAGGTCTCATCTCAAACTGTCATTTTTGAGCCCATGTATCTCATTTCCTTTGAAAGATACTAAAAAGTTGTCAACGAATAAAATGTTACTGATATTTTGATAAACAATTTATCAGTTGACCACTTCTTGATACCTTTTATAGAAAGAGAGATAAATTAACTCAAAGTTGAGAGGCTGCCTAGCCGACAGCGTAGCTCTGTTGCAAGTGCCGACTTGTTAACTTTGAGCCAATTTATCTCATTTCCTGTGAAAGATATCAAAAAGTAATCAACTAACAAAATGTTTATTACAAAAGTATAAATATTTTATCTGTTGACCACTTTTTGATATCTTTCACAGGAAATGAGATGTTTGGGCTAAATGTTGACGGTTGACTAGTACTAAAGTAACTTCATCGGAATCTCCTTTTTGAAATTGTTTATCGTACTCAACATTTTTGAAAGTCACATAGATTGATTTATAAACAAATGTTGATTATATCTGAACCAAATTCAAGTCTAGTCAAGGCTTTCCAGCTTCAAACTTCAACCTCGAGCTAAACAAGAAAGCTTAGAGCTACCGTATACCCTGATCCCCTTCCCGAACCGTGTCAACTTGGTGCCCATATATCTCATTTCCCGTAGAAGATATAAAAAAGTGGTGCATTGATAAAATATTGTTGAATTTATGATAAACATTTTATCAGTTGACAAAATTTTGAGATCTTTCCTAGGATATGAGATAAATTGGCTCCAAACAGTGAGAAAGGTAGCTAGCTCAGCCAGCAAGCGCCGACTGGTCAACTTTGAACTCATTTATTTTATTTCCTGCAAAAGATATCAAAAAGTGGTCAACTGATAAAATATTGCTGAATTTATGAAAAACATTTTGTTAGTTGACAAAATTTTGATATCTTCTACAGGAAACGAGATATAAGAGCTCAAAGTTGAAAAATCGGTGGTAACTATGTTACAGTATTTACTAGGACACTTCTCGATGTTTTT</canonical>
            <polymorphic>AGGCTCCAAGCATTACATAGGTCTCATCTCAAACTGTCATTTTTGAGCCCATGTATCTCATTTCCTTTGAAAGATACTAAAAAGTTGTCAACGAATAAAATGTTACTGATATTTTGATAAACAATTTATCAGTTGACCACTTCTTGATACCTTTTATAGAAAGAGAGATAAATTAACTCAAAGTTGAGAGGCTGCCTAGCCGACAGCGTAGCTCTGTTGCAAGTGCCGACTTGTTAACTTTGAGCCAATTTATCTCATTTCCTGTGAAAGATATCAAAAAGTAATCAACTAACAAAATGTTTATTACAAAAGTATAAATATTTTATCTGTTGACCACTTTTTGATATCTTTCACAGGAAATGAGATGTTTGGGCTAAATGTTGACGGTTGACTAGTACTAAAGTAACTTCATCGGAATCTCCTTTTTGAAATTGTTTATCGTACTCAACATTTTTGAAAGTCACATAGATTGATTTATAAACAAATGTTGATTATATCTRAACCAAATTCAAGTCTAGTCAAGGCTTTCCAGCTTCAAACTTCAACCTCGAGCTAAACAAGAAAGCTTAGAGCTACCGTATACCCTGATCCCCTTCCCGAACCGTGTCAACTTGGTGCCCATATATCTCATTTCCCGTAGAAGATATAAAAAAGTGGTGCATTGATAAAATATTGTTGAATTTATGATAAACATTTTATCAGTTGACAAAATTTTGAGATCTTTCCTAGGATATGAGATAAATTGGCTCCAAACAGTGAGAAAGGTAGCTAGCTCAGCCAGCAAGCGCCGACTGGTCAACTTTGAACTCATTTATTTTATTTCCTGCAAAAGATATCAAAAAGTGGTCAACTGATAAAATATTGCTGAATTTATGAAAAACATTTTGTTAGTTGACAAAATTTTGATATCTTCTACAGGAAACGAGATATAAGAGCTCAAAGTTGAAAAATCGGTGGTAACTATGTTACAGTATTTACTAGGACACTTCTCGATGTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>501 414 85</canonical_bands>
                <polymorphic_bands>586 414</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAGTAACTTCATCGGAATCTC</pcr_primer_p1>
		<pcr_primer_p2>ATCAGGGTATACGGTAGCTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>191</pcr_amplicon_size>
		<canonical_amplicon>TAAAGTAACTTCATCGGAATCTCCTTTTTGAAATTGTTTATCGTACTCAACATTTTTGAAAGTCACATAGATTGATTTATAAACAAATGTTGATTATATCTGAACCAAATTCAAGTCTAGTCAAGGCTTTCCAGCTTCAAACTTCAACCTCGAGCTAAACAAGAAAGCTTAGAGCTACCGTATACCCTGAT</canonical_amplicon>
		<polymorphic_amplicon>TAAAGTAACTTCATCGGAATCTCCTTTTTGAAATTGTTTATCGTACTCAACATTTTTGAAAGTCACATAGATTGATTTATAAACAAATGTTGATTATATCTRAACCAAATTCAAGTCTAGTCAAGGCTTTCCAGCTTCAAACTTCAACCTCGAGCTAAACAAGAAAGCTTAGAGCTACCGTATACCCTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2666</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>34209</contig_pos>
        <strand>+</strand>
        <context>ATTCCACGTC[C/T]TCTAGCATCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTC</left_flank>
        <right_flank>TCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTAAGACCTAGAAACCCAAAATTTTGAATTTGATGGCCTAGAAAACCAAAAGTCGGTCCCAACCGAATTTTGGATATTTCTAGGTCGTTTTAAGCGGACAAAATTGGAAAAAACTCCAAAAAATTCTTTAATTTTTCCAGAAACACATGGATCTACCCGTTGATAAGCTCCGAATACTCCGTGGCTATGATAATGATAAGAAATGGAAGCTAATCGTCGACCAGCAAGTGGCAAAGCAGGTCACACCACCAGCCAAGTATCTCGAGAAGCTCTCCTACTTTTTGGACAAGAAAATGCTCAAAAAAGCGCTGAAAAACAAGGAAATCCAGACGGATGAGACGTCGACGAGTGTTTTGAGACATATTGAGATCAGTTTG</canonical>
            <polymorphic>ATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCYTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTAAGACCTAGAAACCCAAAATTTTGAATTTGATGGCCTAGAAAACCAAAAGTCGGTCCCAACCGAATTTTGGATATTTCTAGGTCGTTTTAAGCGGACAAAATTGGAAAAAACTCCAAAAAATTCTTTAATTTTTCCAGAAACACATGGATCTACCCGTTGATAAGCTCCGAATACTCCGTGGCTATGATAATGATAAGAAATGGAAGCTAATCGTCGACCAGCAAGTGGCAAAGCAGGTCACACCACCAGCCAAGTATCTCGAGAAGCTCTCCTACTTTTTGGACAAGAAAATGCTCAAAAAAGCGCTGAAAAACAAGGAAATCCAGACGGATGAGACGTCGACGAGTGTTTTGAGACATATTGAGATCAGTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCATTTCTGGGTCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AGAACATCATCGAACATCTTATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCT</canonical_amplicon>
		<polymorphic_amplicon>CTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCYTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2667</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>34191</contig_pos>
        <strand>+</strand>
        <context>TCAACGTCCG[A/C]CGCTCAAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCG</left_flank>
        <right_flank>CGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTAAGACCTAGAAACCCAAAATTTTGAATTTGATGGCCTAGAAAACCAAAAGTCGGTCCCAACCGAATTTTGGATATTTCTAGGTCGTTTTAAGCGGACAAAATTGGAAAAAACTCCAAAAAATTCTTTAATTTTTCCAGAAACACATGGATCTACCCGTTGATAAGCTCCGAATACTCCGTGGCTATGATAATGATAAGAAATGGAAGCTAATCGTCGACCAGCAAGTGGCAAAGCAGGTCACACCACCAGCCAAGTATCTCGAGAAGCTCTCCTACTTTTTGGACAAGAAAATGCTCAAAAAAGCGCTGAAAAACAAGGAAATCCAGACGGATGAGACGTCGACGAGTGTTTTGAGA</canonical>
            <polymorphic>TTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGMCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTAAGACCTAGAAACCCAAAATTTTGAATTTGATGGCCTAGAAAACCAAAAGTCGGTCCCAACCGAATTTTGGATATTTCTAGGTCGTTTTAAGCGGACAAAATTGGAAAAAACTCCAAAAAATTCTTTAATTTTTCCAGAAACACATGGATCTACCCGTTGATAAGCTCCGAATACTCCGTGGCTATGATAATGATAAGAAATGGAAGCTAATCGTCGACCAGCAAGTGGCAAAGCAGGTCACACCACCAGCCAAGTATCTCGAGAAGCTCTCCTACTTTTTGGACAAGAAAATGCTCAAAAAAGCGCTGAAAAACAAGGAAATCCAGACGGATGAGACGTCGACGAGTGTTTTGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>497 400 91 9 3</canonical_bands>
                <polymorphic_bands>591 400 9</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>407 232 186 84 83 8</canonical_bands>
                <polymorphic_bands>407 269 232 84 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>502 407 83 8</canonical_bands>
                <polymorphic_bands>585 407 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCATTTCTGGGTCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AGAACATCATCGAACATCTTATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCT</canonical_amplicon>
		<polymorphic_amplicon>CTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGMCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2668</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>34122</contig_pos>
        <strand>+</strand>
        <context>AGCCAAAGAA[G/T]GCCGTTTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAA</left_flank>
        <right_flank>GCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTAAGACCTAGAAACCCAAAATTTTGAATTTGATGGCCTAGAAAACCAAAAGTCGGTCCCAACCGAATTTTGGATATTTCTAGGTCGTTTTAAGCGGACAAAATTGGAAAAAACTCCAAAAAATTCTTTAATTTTTCCAGAAACACATGGATCTACCCGTTGATAAGCTCCGAATACTCCGTGGCTATGATAATGATAAGAAATGGAAGCTAATCGTCGACCAGCAAGTGGCAAAGCAGGTCACACCACCAGCCAAGTATCTCGAGAAGCTCTCCTACTTTTTGGACAAG</canonical>
            <polymorphic>ACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAKGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTAAGACCTAGAAACCCAAAATTTTGAATTTGATGGCCTAGAAAACCAAAAGTCGGTCCCAACCGAATTTTGGATATTTCTAGGTCGTTTTAAGCGGACAAAATTGGAAAAAACTCCAAAAAATTCTTTAATTTTTCCAGAAACACATGGATCTACCCGTTGATAAGCTCCGAATACTCCGTGGCTATGATAATGATAAGAAATGGAAGCTAATCGTCGACCAGCAAGTGGCAAAGCAGGTCACACCACCAGCCAAGTATCTCGAGAAGCTCTCCTACTTTTTGGACAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 254 128 117</canonical_bands>
                <polymorphic_bands>618 254 128</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>481 131 66 65 63 51 43 25 21 17 17 10 10</canonical_bands>
                <polymorphic_bands>481 131 66 65 63 61 43 25 21 17 17 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGGACTACGGTATTTATTGAAA</pcr_primer_p1>
		<pcr_primer_p2>CCACAATCATTTCTCTGCTAA</pcr_primer_p2>
		<pcr_amplicon_size>224</pcr_amplicon_size>
		<canonical_amplicon>AAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGG</canonical_amplicon>
		<polymorphic_amplicon>AAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAKGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2669</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>34107</contig_pos>
        <strand>+</strand>
        <context>TTTTTSGCTT[A/T]AAAAAGCCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTT</left_flank>
        <right_flank>AAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTAAGACCTAGAAACCCAAAATTTTGAATTTGATGGCCTAGAAAACCAAAAGTCGGTCCCAACCGAATTTTGGATATTTCTAGGTCGTTTTAAGCGGACAAAATTGGAAAAAACTCCAAAAAATTCTTTAATTTTTCCAGAAACACATGGATCTACCCGTTGATAAGCTCCGAATACTCCGTGGCTATGATAATGATAAGAAATGGAAGCTAATCGTCGACCAGCAAGTGGCAAAGCAGGTCACACCACCAGCCAAGTATCTCGAGAAGCTCTCC</canonical>
            <polymorphic>ACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTWAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTAAGACCTAGAAACCCAAAATTTTGAATTTGATGGCCTAGAAAACCAAAAGTCGGTCCCAACCGAATTTTGGATATTTCTAGGTCGTTTTAAGCGGACAAAATTGGAAAAAACTCCAAAAAATTCTTTAATTTTTCCAGAAACACATGGATCTACCCGTTGATAAGCTCCGAATACTCCGTGGCTATGATAATGATAAGAAATGGAAGCTAATCGTCGACCAGCAAGTGGCAAAGCAGGTCACACCACCAGCCAAGTATCTCGAGAAGCTCTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 214 117 73 64 32</canonical_bands>
                <polymorphic_bands>564 214 117 73 32</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>286 147 88 72 68 63 49 41 38 38 32 30 26 22</canonical_bands>
                <polymorphic_bands>286 147 88 72 68 68 63 49 41 38 32 26 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGGACTACGGTATTTATTGAAA</pcr_primer_p1>
		<pcr_primer_p2>CCACAATCATTTCTCTGCTAA</pcr_primer_p2>
		<pcr_amplicon_size>224</pcr_amplicon_size>
		<canonical_amplicon>AAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGG</canonical_amplicon>
		<polymorphic_amplicon>AAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTWAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2670</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>34102</contig_pos>
        <strand>+</strand>
        <context>GTCAATTTTT[C/G]GCTTWAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTT</left_flank>
        <right_flank>GCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTAAGACCTAGAAACCCAAAATTTTGAATTTGATGGCCTAGAAAACCAAAAGTCGGTCCCAACCGAATTTTGGATATTTCTAGGTCGTTTTAAGCGGACAAAATTGGAAAAAACTCCAAAAAATTCTTTAATTTTTCCAGAAACACATGGATCTACCCGTTGATAAGCTCCGAATACTCCGTGGCTATGATAATGATAAGAAATGGAAGCTAATCGTCGACCAGCAAGTGGCAAAGCAGGTCACACCACCAGCCAAGTATCTCGAGAAGC</canonical>
            <polymorphic>CTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTSGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTAAGACCTAGAAACCCAAAATTTTGAATTTGATGGCCTAGAAAACCAAAAGTCGGTCCCAACCGAATTTTGGATATTTCTAGGTCGTTTTAAGCGGACAAAATTGGAAAAAACTCCAAAAAATTCTTTAATTTTTCCAGAAACACATGGATCTACCCGTTGATAAGCTCCGAATACTCCGTGGCTATGATAATGATAAGAAATGGAAGCTAATCGTCGACCAGCAAGTGGCAAAGCAGGTCACACCACCAGCCAAGTATCTCGAGAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>501 131 66 65 63 51 43 25 18 17 10 10</canonical_bands>
                <polymorphic_bands>511 131 66 65 63 51 43 25 18 17 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGGACTACGGTATTTATTGAAA</pcr_primer_p1>
		<pcr_primer_p2>CCACAATCATTTCTCTGCTAA</pcr_primer_p2>
		<pcr_amplicon_size>224</pcr_amplicon_size>
		<canonical_amplicon>AAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGG</canonical_amplicon>
		<polymorphic_amplicon>AAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTSGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2671</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>34022</contig_pos>
        <strand>+</strand>
        <context>ACYCATCAAR[A/C]ATTTTCTAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAG</left_flank>
        <right_flank>ATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTAAGACCTAGAAACCCAAAATTTTGAATTTGATGGCCTAGAAAACCAAAAGTCGGTCCCAACCGAATTTTGGATATTTCTAGGTCGTTTTAAGCGGACAAAATTGGAAAAAACTCCAAAAAATTCTTTAATTTTTCCAGAAACACATGGATCTACCCGTTGATAAGCTCCGAATACTCCGTGGCTATGA</canonical>
            <polymorphic>ATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGMATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTAAGACCTAGAAACCCAAAATTTTGAATTTGATGGCCTAGAAAACCAAAAGTCGGTCCCAACCGAATTTTGGATATTTCTAGGTCGTTTTAAGCGGACAAAATTGGAAAAAACTCCAAAAAATTCTTTAATTTTTCCAGAAACACATGGATCTACCCGTTGATAAGCTCCGAATACTCCGTGGCTATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>166 122 119 117 104 69 56 42 39 39 32 17 13 13 12 10 8 8 7 7</canonical_bands>
                <polymorphic_bands>236 166 122 104 69 56 42 39 39 32 17 13 13 12 10 8 8 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>319 251 200 109 68 53</canonical_bands>
                <polymorphic_bands>319 309 251 68 53</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>122 97 69 67 61 46 44 42 39 39 37 36 33 32 29 26 25 20 17 13 13 12 10 9 8 8 8 7 7 7 7 6 4</canonical_bands>
                <polymorphic_bands>122 113 97 67 61 46 42 39 39 37 36 33 32 29 26 25 20 17 13 13 12 10 9 8 8 8 7 7 7 7 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTTTTCGCTTAAAAACAAC</pcr_primer_p1>
		<pcr_primer_p2>GCTGAAAATAGTGAATTTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>207</pcr_amplicon_size>
		<canonical_amplicon>CATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGC</canonical_amplicon>
		<polymorphic_amplicon>CATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGMATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2672</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>34021</contig_pos>
        <strand>+</strand>
        <context>AACYCATCAA[A/G]MATTTTCTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAA</left_flank>
        <right_flank>AATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTAAGACCTAGAAACCCAAAATTTTGAATTTGATGGCCTAGAAAACCAAAAGTCGGTCCCAACCGAATTTTGGATATTTCTAGGTCGTTTTAAGCGGACAAAATTGGAAAAAACTCCAAAAAATTCTTTAATTTTTCCAGAAACACATGGATCTACCCGTTGATAAGCTCCGAATACTCCGTGGCTATG</canonical>
            <polymorphic>GATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAARAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTAAGACCTAGAAACCCAAAATTTTGAATTTGATGGCCTAGAAAACCAAAAGTCGGTCCCAACCGAATTTTGGATATTTCTAGGTCGTTTTAAGCGGACAAAATTGGAAAAAACTCCAAAAAATTCTTTAATTTTTCCAGAAACACATGGATCTACCCGTTGATAAGCTCCGAATACTCCGTGGCTATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>166 122 119 117 104 68 56 43 39 39 32 17 13 13 12 10 8 8 7 7</canonical_bands>
                <polymorphic_bands>236 166 122 104 68 56 43 39 39 32 17 13 13 12 10 8 8 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>319 251 200 109 69 52</canonical_bands>
                <polymorphic_bands>319 309 251 69 52</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTTTTCGCTTAAAAACAAC</pcr_primer_p1>
		<pcr_primer_p2>GCTGAAAATAGTGAATTTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>207</pcr_amplicon_size>
		<canonical_amplicon>CATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGC</canonical_amplicon>
		<polymorphic_amplicon>CATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAARAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2673</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>34014</contig_pos>
        <strand>+</strand>
        <context>GCTGCGAAAC[C/T]CATCAARMAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAAC</left_flank>
        <right_flank>CATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTAAGACCTAGAAACCCAAAATTTTGAATTTGATGGCCTAGAAAACCAAAAGTCGGTCCCAACCGAATTTTGGATATTTCTAGGTCGTTTTAAGCGGACAAAATTGGAAAAAACTCCAAAAAATTCTTTAATTTTTCCAGAAACACATGGATCTACCCGTTGATAAGCTCCGAATACTCCGT</canonical>
            <polymorphic>TTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACYCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTAAGACCTAGAAACCCAAAATTTTGAATTTGATGGCCTAGAAAACCAAAAGTCGGTCCCAACCGAATTTTGGATATTTCTAGGTCGTTTTAAGCGGACAAAATTGGAAAAAACTCCAAAAAATTCTTTAATTTTTCCAGAAACACATGGATCTACCCGTTGATAAGCTCCGAATACTCCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTTCAAAGACTACGGTGTT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTGACCCAGAAATGAG</pcr_primer_p2>
		<pcr_amplicon_size>295</pcr_amplicon_size>
		<canonical_amplicon>CCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>CCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACYCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2674</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>33968</contig_pos>
        <strand>+</strand>
        <context>CTAAAAAAYG[A/G]CATTTTTCGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACG</left_flank>
        <right_flank>CATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTAAGACCTAGAAACCCAAAATTTTGAATTTGATGGCCTAGAAAACCAAAAGTCGGTCCCAACCGAATTTTGGATATTTCTAGGTCGTTTTAAGCGGACAAAATTGGAAAAAACTCCAAAAAATTCTTTAATTTTT</canonical>
            <polymorphic>GATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGRCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTAAGACCTAGAAACCCAAAATTTTGAATTTGATGGCCTAGAAAACCAAAAGTCGGTCCCAACCGAATTTTGGATATTTCTAGGTCGTTTTAAGCGGACAAAATTGGAAAAAACTCCAAAAAATTCTTTAATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>506 316 178</canonical_bands>
                <polymorphic_bands>822 178</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTTCAAAGACTACGGTGTT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTGACCCAGAAATGAG</pcr_primer_p2>
		<pcr_amplicon_size>295</pcr_amplicon_size>
		<canonical_amplicon>CCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>CCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGRCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2675</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>33966</contig_pos>
        <strand></strand>
        <context>TGCTAAAAAA[C/T]GRCATTTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAA</left_flank>
        <right_flank>GGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTAAGACCTAGAAACCCAAAATTTTGAATTTGATGGCCTAGAAAACCAAAAGTCGGTCCCAACCGAATTTTGGATATTTCTAGGTCGTTTTAAGCGGACAAAATTGGAAAAAACTCCAAAAAATTCTTTAATTT</canonical>
            <polymorphic>ACGATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAAYGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTAAGACCTAGAAACCCAAAATTTTGAATTTGATGGCCTAGAAAACCAAAAGTCGGTCCCAACCGAATTTTGGATATTTCTAGGTCGTTTTAAGCGGACAAAATTGGAAAAAACTCCAAAAAATTCTTTAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTTCAAAGACTACGGTGTT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTGACCCAGAAATGAG</pcr_primer_p2>
		<pcr_amplicon_size>295</pcr_amplicon_size>
		<canonical_amplicon>CCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>CCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAAYGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2676</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>33917</contig_pos>
        <strand></strand>
        <context>YTCAAGAAAT[T/C]AAAAATTACA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAAT</left_flank>
        <right_flank>AAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATTCCGGAAATTCTAGAAATGCTGAAAATGCGCTCTACCAAACTTTTACGATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTAAGACCTAGAAACCCAAAATTTTGAATTTGATGGCCTAGAAAACCAAAAGTCGGTCCCAACCGAATTTTGGATATTTCTAGGT</canonical>
            <polymorphic>TAATTCCGGAAATTCTAGAAATGCTGAAAATGCGCTCTACCAAACTTTTACGATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATYAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTAAGACCTAGAAACCCAAAATTTTGAATTTGATGGCCTAGAAAACCAAAAGTCGGTCCCAACCGAATTTTGGATATTTCTAGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>281 262 88 68 63 49 41 38 32 30 26 22</canonical_bands>
                <polymorphic_bands>281 262 110 68 63 49 41 38 32 30 26</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>122 97 77 69 67 55 46 44 39 39 37 33 32 29 26 25 20 17 13 13 12 10 9 9 8 8 7 7 7 7 6 5 4 1</canonical_bands>
                <polymorphic_bands>122 97 77 69 67 55 46 44 39 39 37 33 32 29 26 25 20 17 16 13 13 12 10 9 8 8 7 7 7 6 5 4 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAATTTCGATTAAAAATAGTGA</pcr_primer_p1>
		<pcr_primer_p2>CGATTTTATTCTTTTGTTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>CAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCG</canonical_amplicon>
		<polymorphic_amplicon>CAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATYAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2677</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>33907</contig_pos>
        <strand></strand>
        <context>WTGAAAAAAA[T/C]TCAAGAAATY</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAA</left_flank>
        <right_flank>TCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACGTTTTTTTAATTCCGGAAATTCTAGAAATGCTGAAAATGCGCTCTACCAAACTTTTACGATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTAAGACCTAGAAACCCAAAATTTTGAATTTGATGGCCTAGAAAACCAAAAGTCGGTCCCAACCGAATTTTGGAT</canonical>
            <polymorphic>GACGTTTTTTTAATTCCGGAAATTCTAGAAATGCTGAAAATGCGCTCTACCAAACTTTTACGATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAAYTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTAAGACCTAGAAACCCAAAATTTTGAATTTGATGGCCTAGAAAACCAAAAGTCGGTCCCAACCGAATTTTGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>166 122 119 117 104 77 60 39 39 32 20 17 13 13 12 10 10 8 8 7 7</canonical_bands>
                <polymorphic_bands>283 122 119 104 77 60 39 39 32 20 17 13 13 12 10 10 8 8 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>122 97 77 69 67 55 46 44 39 39 37 33 32 29 26 25 17 13 13 12 11 10 10 9 9 8 8 7 7 7 7 6 5 4</canonical_bands>
                <polymorphic_bands>122 97 77 69 67 55 46 46 44 39 39 33 32 29 26 25 17 13 13 12 11 10 10 9 8 8 7 7 7 7 6 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAATTTCGATTAAAAATAGTGA</pcr_primer_p1>
		<pcr_primer_p2>CGATTTTATTCTTTTGTTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>CAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCG</canonical_amplicon>
		<polymorphic_amplicon>CAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAAYTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2678</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>33897</contig_pos>
        <strand></strand>
        <context>AACATTTTTT[A/T]TGAAAAAAAY</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTT</left_flank>
        <right_flank>TGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGC</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGACTAGGTGACGTTTTTTTAATTCCGGAAATTCTAGAAATGCTGAAAATGCGCTCTACCAAACTTTTACGATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTAAGACCTAGAAACCCAAAATTTTGAATTTGATGGCCTAGAAAACCAAAAGTCGGTCCCAACCG</canonical>
            <polymorphic>CTGACTAGGTGACGTTTTTTTAATTCCGGAAATTCTAGAAATGCTGAAAATGCGCTCTACCAAACTTTTACGATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTWTGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTAAGACCTAGAAACCCAAAATTTTGAATTTGATGGCCTAGAAAACCAAAAGTCGGTCCCAACCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATTTCGATTAAAAATAGTGA</pcr_primer_p1>
		<pcr_primer_p2>CGATTTTATTCTTTTGTTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>CAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCG</canonical_amplicon>
		<polymorphic_amplicon>CAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTWTGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2679</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>33847</contig_pos>
        <strand>+</strand>
        <context>TTATTTTTGW[C/T]TGATATCCAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGA</left_flank>
        <right_flank>TGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCATCTGTGTTGTTTGCTCGAAAACTTTTTAATTTCACCACTTATTTTCTGACTAGGTGACGTTTTTTTAATTCCGGAAATTCTAGAAATGCTGAAAATGCGCTCTACCAAACTTTTACGATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTAAGACCTAGAAAC</canonical>
            <polymorphic>TGTCATCTGTGTTGTTTGCTCGAAAACTTTTTAATTTCACCACTTATTTTCTGACTAGGTGACGTTTTTTTAATTCCGGAAATTCTAGAAATGCTGAAAATGCGCTCTACCAAACTTTTACGATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGAYTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTAAGACCTAGAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATTTCGATTAAAAATAGTGA</pcr_primer_p1>
		<pcr_primer_p2>CGATTTTATTCTTTTGTTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>CAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCG</canonical_amplicon>
		<polymorphic_amplicon>CAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGAYTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2680</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>33835</contig_pos>
        <strand>+</strand>
        <context>GTTTTAAAAW[A/T]ATTATTTTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAAT</left_flank>
        <right_flank>ATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAATAGAAAGTGTCATCTGTGTTGTTTGCTCGAAAACTTTTTAATTTCACCACTTATTTTCTGACTAGGTGACGTTTTTTTAATTCCGGAAATTCTAGAAATGCTGAAAATGCGCTCTACCAAACTTTTACGATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTA</canonical>
            <polymorphic>AATAATAGAAAGTGTCATCTGTGTTGTTTGCTCGAAAACTTTTTAATTTCACCACTTATTTTCTGACTAGGTGACGTTTTTTTAATTCCGGAAATTCTAGAAATGCTGAAAATGCGCTCTACCAAACTTTTACGATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATWATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>106 97 77 69 67 55 46 44 44 39 39 37 33 32 29 26 25 17 13 13 12 10 9 9 8 8 7 7 7 6 5 4</canonical_bands>
                <polymorphic_bands>106 100 97 77 69 55 46 44 44 39 39 37 32 29 26 25 17 13 13 12 10 9 9 8 8 7 7 7 6 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAATTTCGATTAAAAATAGTGA</pcr_primer_p1>
		<pcr_primer_p2>CGATTTTATTCTTTTGTTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>CAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCG</canonical_amplicon>
		<polymorphic_amplicon>CAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATWATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2681</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>33834</contig_pos>
        <strand>+</strand>
        <context>TGTTTTAAAA[A/T]WATTATTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAA</left_flank>
        <right_flank>AATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATAATAGAAAGTGTCATCTGTGTTGTTTGCTCGAAAACTTTTTAATTTCACCACTTATTTTCTGACTAGGTGACGTTTTTTTAATTCCGGAAATTCTAGAAATGCTGAAAATGCGCTCTACCAAACTTTTACGATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGT</canonical>
            <polymorphic>AAATAATAGAAAGTGTCATCTGTGTTGTTTGCTCGAAAACTTTTTAATTTCACCACTTATTTTCTGACTAGGTGACGTTTTTTTAATTCCGGAAATTCTAGAAATGCTGAAAATGCGCTCTACCAAACTTTTACGATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAAWAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATTTCGATTAAAAATAGTGA</pcr_primer_p1>
		<pcr_primer_p2>CGATTTTATTCTTTTGTTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>CAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCG</canonical_amplicon>
		<polymorphic_amplicon>CAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAAWAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2682</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>33798</contig_pos>
        <strand>+</strand>
        <context>AACAAGTTTT[A/G]AACATGCGCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTT</left_flank>
        <right_flank>AACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAGAGAGAAAGAGACGCAGAGAAAATAAGAGGGAAAATAATAGAAAGTGTCATCTGTGTTGTTTGCTCGAAAACTTTTTAATTTCACCACTTATTTTCTGACTAGGTGACGTTTTTTTAATTCCGGAAATTCTAGAAATGCTGAAAATGCGCTCTACCAAACTTTTACGATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACA</canonical>
            <polymorphic>GAGAGAGAGAAAGAGACGCAGAGAAAATAAGAGGGAAAATAATAGAAAGTGTCATCTGTGTTGTTTGCTCGAAAACTTTTTAATTTCACCACTTATTTTCTGACTAGGTGACGTTTTTTTAATTCCGGAAATTCTAGAAATGCTGAAAATGCGCTCTACCAAACTTTTACGATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTRAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>382 214 191 117 64 32</canonical_bands>
                <polymorphic_bands>382 214 191 149 64</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>262 162 88 80 68 63 49 41 39 38 32 30 26 22</canonical_bands>
                <polymorphic_bands>262 162 88 81 80 68 63 41 39 38 30 26 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGTCAAACACAAGAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>GAGCAACAATTGATACAGAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTC</canonical_amplicon>
		<polymorphic_amplicon>GGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTRAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2683</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>33780</contig_pos>
        <strand>+</strand>
        <context>TTGCTGYGAG[A/G]CCCATCAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAG</left_flank>
        <right_flank>CCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGACGCAGAGAAAATAAGAGGGAAAATAATAGAAAGTGTCATCTGTGTTGTTTGCTCGAAAACTTTTTAATTTCACCACTTATTTTCTGACTAGGTGACGTTTTTTTAATTCCGGAAATTCTAGAAATGCTGAAAATGCGCTCTACCAAACTTTTACGATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGAT</canonical>
            <polymorphic>GAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGACGCAGAGAAAATAAGAGGGAAAATAATAGAAAGTGTCATCTGTGTTGTTTGCTCGAAAACTTTTTAATTTCACCACTTATTTTCTGACTAGGTGACGTTTTTTTAATTCCGGAAATTCTAGAAATGCTGAAAATGCGCTCTACCAAACTTTTACGATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGRCCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGTCAAACACAAGAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>GAGCAACAATTGATACAGAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTC</canonical_amplicon>
		<polymorphic_amplicon>GGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGRCCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2684</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>33765</contig_pos>
        <strand></strand>
        <context>AGTGAATAAA[G/C]AGAATTGCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAA</left_flank>
        <right_flank>AGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGACGCAGAGAAAATAAGAGGGAAAATAATAGAAAGTGTCATCTGTGTTGTTTGCTCGAAAACTTTTTAATTTCACCACTTATTTTCTGACTAGGTGACGTTTTTTTAATTCCGGAAATTCTAGAAATGCTGAAAATGCGCTCTACCAAACTTTTACGATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGT</canonical>
            <polymorphic>AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGACGCAGAGAAAATAAGAGGGAAAATAATAGAAAGTGTCATCTGTGTTGTTTGCTCGAAAACTTTTTAATTTCACCACTTATTTTCTGACTAGGTGACGTTTTTTTAATTCCGGAAATTCTAGAAATGCTGAAAATGCGCTCTACCAAACTTTTACGATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAASAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGTCAAACACAAGAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>GAGCAACAATTGATACAGAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTC</canonical_amplicon>
		<polymorphic_amplicon>GGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAASAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2686</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>40136</contig_pos>
        <strand>+</strand>
        <context>AATTCGTTGA[C/G]AAAGCCACCC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACGGTATTTTCAATTTTCCAGACATTTGCTGATCAACTGAAATTCGTTGA</left_flank>
        <right_flank>AAAGCCACCCATGTCCAATGGGACTCCATCTCCTCGGACATGAAAGATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACGAGAAGCGGAGACGTTCCACGGTGTTCTAGAAGTAATCCTGGCTTTCGGAAACTATATGAATAGTGGAAAAAGGGGCGGAGCCTATGGATTCAAGCTATCGTCGCTGGATTCGCTAGCGATTCTCAAGTCGCAAACTGATAAGAGTTTGACACTGTTGCATATGATTGTGGCGGAGATTGAGACACATTTGTCGCATTTGAAGGTGAGAATTTTGAATTTTTTGTATTAGAAGGGTCCCTTTAATAGAAGGGCCTCTCTAATAGAAGGTCACTCTGAGAGGAGATTGGGAAAGTGACGCCCCCCCCCCCCCCCTAATTGAAGACCCCCCTCTAGTTGAAGAGTCCCCTCTAATTAAAGAGCCCTCTCTATTGAAAGGGCCCCTCTAATAGAAGGCTCCCCTCTAATTGAAAAGCCCCCTCTGTAGTTGAAGCCCTCCCCAGGTTTTACGGTATTTTCAATTTTCCAGACATTTGCTGATCAACTGAAATTCGTTGAGAAAGCCACCCATGTCCAATGGGACTCCATCTCCTCGGACATGAAAGATTTGGAACAAGGATTCAAAATGGCTGAAAAAGAGCAATCGCTGAAAGGAGCCGACTGCCCTGAAACCCTCCAAGAATTCCTAGAAACTCGGAAACAAAAAATGACGGATCTTGAGCAATCCTTCCAATTGGCCAAATCATCGTTCAAGGATTGCTGCGAATTCTACGGGGAGAACGAAAAAACCACTCCTCCCAACATCTTCTTCCAGAAGTTGGCTCACTTCGTCGCCAATTATAATAAGTGTCGACAGGAGAATGAGGCGAAGGCCGCTGCTGAGAAGGTAGGAAATGCTGAAAATTGTCTAGAAAGTGCTGAAAAATGACATAAAATATGATGAAGACGGTCTGGAAAATGCTGAAACTGACCCAAACTAGGCCAAATGTGACCTAAAGTAGGCCAAATATGATCTAGAAAATGCGGAAAATTGCTTAAAATGACATAGAAATTGTTGAA</canonical>
            <polymorphic>CACGAGAAGCGGAGACGTTCCACGGTGTTCTAGAAGTAATCCTGGCTTTCGGAAACTATATGAATAGTGGAAAAAGGGGCGGAGCCTATGGATTCAAGCTATCGTCGCTGGATTCGCTAGCGATTCTCAAGTCGCAAACTGATAAGAGTTTGACACTGTTGCATATGATTGTGGCGGAGATTGAGACACATTTGTCGCATTTGAAGGTGAGAATTTTGAATTTTTTGTATTAGAAGGGTCCCTTTAATAGAAGGGCCTCTCTAATAGAAGGTCACTCTGAGAGGAGATTGGGAAAGTGACGCCCCCCCCCCCCCCCTAATTGAAGACCCCCCTCTAGTTGAAGAGTCCCCTCTAATTAAAGAGCCCTCTCTATTGAAAGGGCCCCTCTAATAGAAGGCTCCCCTCTAATTGAAAAGCCCCCTCTGTAGTTGAAGCCCTCCCCAGGTTTTACGGTATTTTCAATTTTCCAGACATTTGCTGATCAACTGAAATTCGTTGASAAAGCCACCCATGTCCAATGGGACTCCATCTCCTCGGACATGAAAGATTTGGAACAAGGATTCAAAATGGCTGAAAAAGAGCAATCGCTGAAAGGAGCCGACTGCCCTGAAACCCTCCAAGAATTCCTAGAAACTCGGAAACAAAAAATGACGGATCTTGAGCAATCCTTCCAATTGGCCAAATCATCGTTCAAGGATTGCTGCGAATTCTACGGGGAGAACGAAAAAACCACTCCTCCCAACATCTTCTTCCAGAAGTTGGCTCACTTCGTCGCCAATTATAATAAGTGTCGACAGGAGAATGAGGCGAAGGCCGCTGCTGAGAAGGTAGGAAATGCTGAAAATTGTCTAGAAAGTGCTGAAAAATGACATAAAATATGATGAAGACGGTCTGGAAAATGCTGAAACTGACCCAAACTAGGCCAAATGTGACCTAAAGTAGGCCAAATATGATCTAGAAAATGCGGAAAATTGCTTAAAATGACATAGAAATTGTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGTTGAAGAGTCCCCTCTAAT</pcr_primer_p1>
		<pcr_primer_p2>CTCTTTTTCAGCCATTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTAGTTGAAGAGTCCCCTCTAATTAAAGAGCCCTCTCTATTGAAAGGGCCCCTCTAATAGAAGGCTCCCCTCTAATTGAAAAGCCCCCTCTGTAGTTGAAGCCCTCCCCAGGTTTTACGGTATTTTCAATTTTCCAGACATTTGCTGATCAACTGAAATTCGTTGAGAAAGCCACCCATGTCCAATGGGACTCCATCTCCTCGGACATGAAAGATTTGGAACAAGGATTCAAAATGGCTGAAAAAGAG</canonical_amplicon>
		<polymorphic_amplicon>CTAGTTGAAGAGTCCCCTCTAATTAAAGAGCCCTCTCTATTGAAAGGGCCCCTCTAATAGAAGGCTCCCCTCTAATTGAAAAGCCCCCTCTGTAGTTGAAGCCCTCCCCAGGTTTTACGGTATTTTCAATTTTCCAGACATTTGCTGATCAACTGAAATTCGTTGASAAAGCCACCCATGTCCAATGGGACTCCATCTCCTCGGACATGAAAGATTTGGAACAAGGATTCAAAATGGCTGAAAAAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2687</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>40280</contig_pos>
        <strand>+</strand>
        <context>CTCGGAAACA[A/G]AAAATGACGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAGCCGACTGCCCTGAAACCCTCCAAGAATTCCTAGAAACTCGGAAACA</left_flank>
        <right_flank>AAAATGACGGATCTTGAGCAATCCTTCCAATTGGCCAAATCATCGTTCAA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGTTTGACACTGTTGCATATGATTGTGGCGGAGATTGAGACACATTTGTCGCATTTGAAGGTGAGAATTTTGAATTTTTTGTATTAGAAGGGTCCCTTTAATAGAAGGGCCTCTCTAATAGAAGGTCACTCTGAGAGGAGATTGGGAAAGTGACGCCCCCCCCCCCCCCCTAATTGAAGACCCCCCTCTAGTTGAAGAGTCCCCTCTAATTAAAGAGCCCTCTCTATTGAAAGGGCCCCTCTAATAGAAGGCTCCCCTCTAATTGAAAAGCCCCCTCTGTAGTTGAAGCCCTCCCCAGGTTTTACGGTATTTTCAATTTTCCAGACATTTGCTGATCAACTGAAATTCGTTGAGAAAGCCACCCATGTCCAATGGGACTCCATCTCCTCGGACATGAAAGATTTGGAACAAGGATTCAAAATGGCTGAAAAAGAGCAATCGCTGAAAGGAGCCGACTGCCCTGAAACCCTCCAAGAATTCCTAGAAACTCGGAAACAAAAAATGACGGATCTTGAGCAATCCTTCCAATTGGCCAAATCATCGTTCAAGGATTGCTGCGAATTCTACGGGGAGAACGAAAAAACCACTCCTCCCAACATCTTCTTCCAGAAGTTGGCTCACTTCGTCGCCAATTATAATAAGTGTCGACAGGAGAATGAGGCGAAGGCCGCTGCTGAGAAGGTAGGAAATGCTGAAAATTGTCTAGAAAGTGCTGAAAAATGACATAAAATATGATGAAGACGGTCTGGAAAATGCTGAAACTGACCCAAACTAGGCCAAATGTGACCTAAAGTAGGCCAAATATGATCTAGAAAATGCGGAAAATTGCTTAAAATGACATAGAAATTGTTGAAAATTGCATAGAAAAAGCTAAAAATCGCTCAGAAAATGCCAAAACTGACCCAGACTAGGCCAAATATGGCCTAAATTAGACCAAAAATCGCCTAAAACATGCTGAAAATAGTCTAGAAATAGCTGAAAATGCCCTAGAATATGCT</canonical>
            <polymorphic>AGAGTTTGACACTGTTGCATATGATTGTGGCGGAGATTGAGACACATTTGTCGCATTTGAAGGTGAGAATTTTGAATTTTTTGTATTAGAAGGGTCCCTTTAATAGAAGGGCCTCTCTAATAGAAGGTCACTCTGAGAGGAGATTGGGAAAGTGACGCCCCCCCCCCCCCCCTAATTGAAGACCCCCCTCTAGTTGAAGAGTCCCCTCTAATTAAAGAGCCCTCTCTATTGAAAGGGCCCCTCTAATAGAAGGCTCCCCTCTAATTGAAAAGCCCCCTCTGTAGTTGAAGCCCTCCCCAGGTTTTACGGTATTTTCAATTTTCCAGACATTTGCTGATCAACTGAAATTCGTTGAGAAAGCCACCCATGTCCAATGGGACTCCATCTCCTCGGACATGAAAGATTTGGAACAAGGATTCAAAATGGCTGAAAAAGAGCAATCGCTGAAAGGAGCCGACTGCCCTGAAACCCTCCAAGAATTCCTAGAAACTCGGAAACARAAAATGACGGATCTTGAGCAATCCTTCCAATTGGCCAAATCATCGTTCAAGGATTGCTGCGAATTCTACGGGGAGAACGAAAAAACCACTCCTCCCAACATCTTCTTCCAGAAGTTGGCTCACTTCGTCGCCAATTATAATAAGTGTCGACAGGAGAATGAGGCGAAGGCCGCTGCTGAGAAGGTAGGAAATGCTGAAAATTGTCTAGAAAGTGCTGAAAAATGACATAAAATATGATGAAGACGGTCTGGAAAATGCTGAAACTGACCCAAACTAGGCCAAATGTGACCTAAAGTAGGCCAAATATGATCTAGAAAATGCGGAAAATTGCTTAAAATGACATAGAAATTGTTGAAAATTGCATAGAAAAAGCTAAAAATCGCTCAGAAAATGCCAAAACTGACCCAGACTAGGCCAAATATGGCCTAAATTAGACCAAAAATCGCCTAAAACATGCTGAAAATAGTCTAGAAATAGCTGAAAATGCCCTAGAATATGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACATGAAAGATTTGGAACAA</pcr_primer_p1>
		<pcr_primer_p2>TTATTATAATTGGCGACGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GACATGAAAGATTTGGAACAAGGATTCAAAATGGCTGAAAAAGAGCAATCGCTGAAAGGAGCCGACTGCCCTGAAACCCTCCAAGAATTCCTAGAAACTCGGAAACAAAAAATGACGGATCTTGAGCAATCCTTCCAATTGGCCAAATCATCGTTCAAGGATTGCTGCGAATTCTACGGGGAGAACGAAAAAACCACTCCTCCCAACATCTTCTTCCAGAAGTTGGCTCACTTCGTCGCCAATTATAATAA</canonical_amplicon>
		<polymorphic_amplicon>GACATGAAAGATTTGGAACAAGGATTCAAAATGGCTGAAAAAGAGCAATCGCTGAAAGGAGCCGACTGCCCTGAAACCCTCCAAGAATTCCTAGAAACTCGGAAACARAAAATGACGGATCTTGAGCAATCCTTCCAATTGGCCAAATCATCGTTCAAGGATTGCTGCGAATTCTACGGGGAGAACGAAAAAACCACTCCTCCCAACATCTTCTTCCAGAAGTTGGCTCACTTCGTCGCCAATTATAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2688</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>40380</contig_pos>
        <strand>+</strand>
        <context>TCCTCCCAAC[A/G]TCTTCTTCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGATTGCTGCGAATTCTACGGGGAGAACGAAAAAACCACTCCTCCCAAC</left_flank>
        <right_flank>TCTTCTTCCAGAAGTTGGCTCACTTCGTCGCCAATTATAATAAGTGTCGA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATAGAAGGGCCTCTCTAATAGAAGGTCACTCTGAGAGGAGATTGGGAAAGTGACGCCCCCCCCCCCCCCCTAATTGAAGACCCCCCTCTAGTTGAAGAGTCCCCTCTAATTAAAGAGCCCTCTCTATTGAAAGGGCCCCTCTAATAGAAGGCTCCCCTCTAATTGAAAAGCCCCCTCTGTAGTTGAAGCCCTCCCCAGGTTTTACGGTATTTTCAATTTTCCAGACATTTGCTGATCAACTGAAATTCGTTGAGAAAGCCACCCATGTCCAATGGGACTCCATCTCCTCGGACATGAAAGATTTGGAACAAGGATTCAAAATGGCTGAAAAAGAGCAATCGCTGAAAGGAGCCGACTGCCCTGAAACCCTCCAAGAATTCCTAGAAACTCGGAAACAAAAAATGACGGATCTTGAGCAATCCTTCCAATTGGCCAAATCATCGTTCAAGGATTGCTGCGAATTCTACGGGGAGAACGAAAAAACCACTCCTCCCAACATCTTCTTCCAGAAGTTGGCTCACTTCGTCGCCAATTATAATAAGTGTCGACAGGAGAATGAGGCGAAGGCCGCTGCTGAGAAGGTAGGAAATGCTGAAAATTGTCTAGAAAGTGCTGAAAAATGACATAAAATATGATGAAGACGGTCTGGAAAATGCTGAAACTGACCCAAACTAGGCCAAATGTGACCTAAAGTAGGCCAAATATGATCTAGAAAATGCGGAAAATTGCTTAAAATGACATAGAAATTGTTGAAAATTGCATAGAAAAAGCTAAAAATCGCTCAGAAAATGCCAAAACTGACCCAGACTAGGCCAAATATGGCCTAAATTAGACCAAAAATCGCCTAAAACATGCTGAAAATAGTCTAGAAATAGCTGAAAATGCCCTAGAATATGCTGAAAATAGCCTTGAAAATGCTGAAAATGGCTTTGAAATGTTGAAATTTTCCTTGAAATTGCTGAAAAATGCTCTAGAAAATGCTGTACATCCATCTCGGG</canonical>
            <polymorphic>TAATAGAAGGGCCTCTCTAATAGAAGGTCACTCTGAGAGGAGATTGGGAAAGTGACGCCCCCCCCCCCCCCCTAATTGAAGACCCCCCTCTAGTTGAAGAGTCCCCTCTAATTAAAGAGCCCTCTCTATTGAAAGGGCCCCTCTAATAGAAGGCTCCCCTCTAATTGAAAAGCCCCCTCTGTAGTTGAAGCCCTCCCCAGGTTTTACGGTATTTTCAATTTTCCAGACATTTGCTGATCAACTGAAATTCGTTGAGAAAGCCACCCATGTCCAATGGGACTCCATCTCCTCGGACATGAAAGATTTGGAACAAGGATTCAAAATGGCTGAAAAAGAGCAATCGCTGAAAGGAGCCGACTGCCCTGAAACCCTCCAAGAATTCCTAGAAACTCGGAAACAAAAAATGACGGATCTTGAGCAATCCTTCCAATTGGCCAAATCATCGTTCAAGGATTGCTGCGAATTCTACGGGGAGAACGAAAAAACCACTCCTCCCAACRTCTTCTTCCAGAAGTTGGCTCACTTCGTCGCCAATTATAATAAGTGTCGACAGGAGAATGAGGCGAAGGCCGCTGCTGAGAAGGTAGGAAATGCTGAAAATTGTCTAGAAAGTGCTGAAAAATGACATAAAATATGATGAAGACGGTCTGGAAAATGCTGAAACTGACCCAAACTAGGCCAAATGTGACCTAAAGTAGGCCAAATATGATCTAGAAAATGCGGAAAATTGCTTAAAATGACATAGAAATTGTTGAAAATTGCATAGAAAAAGCTAAAAATCGCTCAGAAAATGCCAAAACTGACCCAGACTAGGCCAAATATGGCCTAAATTAGACCAAAAATCGCCTAAAACATGCTGAAAATAGTCTAGAAATAGCTGAAAATGCCCTAGAATATGCTGAAAATAGCCTTGAAAATGCTGAAAATGGCTTTGAAATGTTGAAATTTTCCTTGAAATTGCTGAAAAATGCTCTAGAAAATGCTGTACATCCATCTCGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTCAAAATGGCTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CATTCTCCTGTCGACACTTATTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GATTCAAAATGGCTGAAAAAGAGCAATCGCTGAAAGGAGCCGACTGCCCTGAAACCCTCCAAGAATTCCTAGAAACTCGGAAACAAAAAATGACGGATCTTGAGCAATCCTTCCAATTGGCCAAATCATCGTTCAAGGATTGCTGCGAATTCTACGGGGAGAACGAAAAAACCACTCCTCCCAACATCTTCTTCCAGAAGTTGGCTCACTTCGTCGCCAATTATAATAAGTGTCGACAGGAGAATG</canonical_amplicon>
		<polymorphic_amplicon>GATTCAAAATGGCTGAAAAAGAGCAATCGCTGAAAGGAGCCGACTGCCCTGAAACCCTCCAAGAATTCCTAGAAACTCGGAAACAAAAAATGACGGATCTTGAGCAATCCTTCCAATTGGCCAAATCATCGTTCAAGGATTGCTGCGAATTCTACGGGGAGAACGAAAAAACCACTCCTCCCAACRTCTTCTTCCAGAAGTTGGCTCACTTCGTCGCCAATTATAATAAGTGTCGACAGGAGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2720</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>41847</contig_pos>
        <strand></strand>
        <context>TTTAAGTCTG[T/A]AATTGTCAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAAAATGTCTAGGTTTTTTTTTAATTGAAAAAAAAACATTTTTAAGTCTG</left_flank>
        <right_flank>AATTGTCAGAAAATTCAGAATTTTTAAAAATTTTGAAATTTTAAATTTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCCCAATTTTCAGGACTAAAACACACTGGTGGCACGACTCCGAACCGCCGAAAAATGTCAAAATCACCGTCGCCGGCGCCACGAAGCTCCGCCCCTCCACCAGTAGCACCTAAGACCCGAGTGGTCTCTGTGGAAAGGGATCGACAATAATTTTTTTTTGTTTTTTTCCCATTTTTCCCCTCAAAAATAGTCTAAATTGTCTAGATTTTCCCTTTTTTCCTTCTCTCTCATTCTTCATCTACACTCAACGGGCATTTCTTTTTCTGAAATTTCTGAGCATTTTCCCCCAAAAATAACTAAAAATCCGGTCCTTTGCTGTCATTTTTAACCGGTCCCCTCTCTTTCTCTCTCTGATTGTCTAATGGTGTAATAACAATGAAAAACCATCAATAATCACAAAAATTTATTGTGGGTCAAGATCTCAAAATCTGAATGTCAAAAAAATGGAAAAAATGTCTAGGTTTTTTTTTAATTGAAAAAAAAACATTTTTAAGTCTGTAATTGTCAGAAAATTCAGAATTTTTAAAAATTTTGAAATTTTAAATTTTCGAAAACAATTTAAAAAACAATTTTCTCTAATTTTTAAAGCAATTGGGTGGGAAAAGAGATAACGAGTGAAAAGCACTGCAAATGGAATCCCTCCATGTCCACGTGGCTTCGTGATGGTCCTCGTTGAAGAAGTGCTCGAGTTTGTGGATTCGTCTGGGAAAAAGTTAATTAGGGGAGGAGTTAATTGACTAATTGGAGGGAAAAATTGATTAAAAGTGTGATTTTTCATATGAAAGTACGGTTTTCTAGACCGCGACCGGCACCAATTTTAACGGTTTTTATATCAAAATGATCCTTAGAATGTCAGCTATCAGAATATATAAATTTCATAGAGAAACTCTAATTTTGAAGGGACCAACGGGTCCAAAAGAGTTACTAGCTTCTTTTTTGAAATCGGATTAATTTTGGGGATTTTCAAAGGCCCAAATCTTTCTAAAAATCCATATTTTT</canonical>
            <polymorphic>TCCCCAATTTTCAGGACTAAAACACACTGGTGGCACGACTCCGAACCGCCGAAAAATGTCAAAATCACCGTCGCCGGCGCCACGAAGCTCCGCCCCTCCACCAGTAGCACCTAAGACCCGAGTGGTCTCTGTGGAAAGGGATCGACAATAATTTTTTTTTGTTTTTTTCCCATTTTTCCCCTCAAAAATAGTCTAAATTGTCTAGATTTTCCCTTTTTTCCTTCTCTCTCATTCTTCATCTACACTCAACGGGCATTTCTTTTTCTGAAATTTCTGAGCATTTTCCCCCAAAAATAACTAAAAATCCGGTCCTTTGCTGTCATTTTTAACCGGTCCCCTCTCTTTCTCTCTCTGATTGTCTAATGGTGTAATAACAATGAAAAACCATCAATAATCACAAAAATTTATTGTGGGTCAAGATCTCAAAATCTGAATGTCAAAAAAATGGAAAAAATGTCTAGGTTTTTTTTTAATTGAAAAAAAAACATTTTTAAGTCTGWAATTGTCAGAAAATTCAGAATTTTTAAAAATTTTGAAATTTTAAATTTTCGAAAACAATTTAAAAAACAATTTTCTCTAATTTTTAAAGCAATTGGGTGGGAAAAGAGATAACGAGTGAAAAGCACTGCAAATGGAATCCCTCCATGTCCACGTGGCTTCGTGATGGTCCTCGTTGAAGAAGTGCTCGAGTTTGTGGATTCGTCTGGGAAAAAGTTAATTAGGGGAGGAGTTAATTGACTAATTGGAGGGAAAAATTGATTAAAAGTGTGATTTTTCATATGAAAGTACGGTTTTCTAGACCGCGACCGGCACCAATTTTAACGGTTTTTATATCAAAATGATCCTTAGAATGTCAGCTATCAGAATATATAAATTTCATAGAGAAACTCTAATTTTGAAGGGACCAACGGGTCCAAAAGAGTTACTAGCTTCTTTTTTGAAATCGGATTAATTTTGGGGATTTTCAAAGGCCCAAATCTTTCTAAAAATCCATATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAATGAAAAACCATCAATAATC</pcr_primer_p1>
		<pcr_primer_p2>CTTTTCACTCGTTATCTCTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACAATGAAAAACCATCAATAATCACAAAAATTTATTGTGGGTCAAGATCTCAAAATCTGAATGTCAAAAAAATGGAAAAAATGTCTAGGTTTTTTTTTAATTGAAAAAAAAACATTTTTAAGTCTGTAATTGTCAGAAAATTCAGAATTTTTAAAAATTTTGAAATTTTAAATTTTCGAAAACAATTTAAAAAACAATTTTCTCTAATTTTTAAAGCAATTGGGTGGGAAAAGAGATAACGAGTGAAAAG</canonical_amplicon>
		<polymorphic_amplicon>ACAATGAAAAACCATCAATAATCACAAAAATTTATTGTGGGTCAAGATCTCAAAATCTGAATGTCAAAAAAATGGAAAAAATGTCTAGGTTTTTTTTTAATTGAAAAAAAAACATTTTTAAGTCTGWAATTGTCAGAAAATTCAGAATTTTTAAAAATTTTGAAATTTTAAATTTTCGAAAACAATTTAAAAAACAATTTTCTCTAATTTTTAAAGCAATTGGGTGGGAAAAGAGATAACGAGTGAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2721</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>176520</contig_pos>
        <strand>+</strand>
        <context>TTTCGGTCTT[C/T]CAGTAGGCGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACAAGAAAAGGACGAGAAACTGGCTGCTCGTGCCGCTCGTTTCGGTCTT</left_flank>
        <right_flank>CAGTAGGCGGTGCCTCTCCAAAAGTGGGCGGAGCCACAAAGGACGCGAAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAGAAAAGAAAGGAGAAATGGTGACCGCAGAAGTGATCCGGCTGACAAACCAGTGGATATTGTCACTGTTGAGCAAAATAAGCGAGCTAGAGCTATTCGATTCGGTCTCCCAGTCACTGCGGAGGATCTGGGCTCGGAAGATGCTAAAGCAGCAAGAGCTAAGAGGTAAGAACTAGTTTTTGATGTCGAATTGACGAATTTGGAGTCAATGTCCATGAATTTTGATTAAGGCTGTTCTAAAAAAAAAAAGAAAGTTTTTTTGAATTTGGACTGCTCAAAAATGTGCTAGAATTGTGCTAGAATCTGCATCTGCATACCCTATTATTCAGTTCCCCCAAAATGCTTTTTTCTAGATTCGGCTTGCCAGAAGACGCAAAACGACTCGGTTCTGATGATGCCAAGGCCAGAAGAGCCGAAAGATTCGGAATCCAATCTCCAGCTACTGCTAAACAAGAAAAGGACGAGAAACTGGCTGCTCGTGCCGCTCGTTTCGGTCTTCCAGTAGGCGGTGCCTCTCCAAAAGTGGGCGGAGCCACAAAGGACGCGAAGCTGGCTGAAAGAGCCAAAAGATTCGGAGGAGCTGTGGATGATGCGGAAATGGAGGCGAAAAAGAAGGCTCGATTGGAGAGATTTGGAAATGGATCGAAATAAATTAACCTTTTTTTGTTATTGTACATTTTTCTATTTTTATCTGTTTAGGAGAACATGTGTGATTTTGAGAGGGGAAAATTGGAAAAACTATTCGCTGAAAATTCTCTATTTCCGCTAATTACAAGCATTTCGAGCCATCCCCTTCGAGTTGAAAAATCGATTTACCTTCAAAAATTCCATAGTTCTCTCCGCCTCTCCCGTCTCCCTTCAAAATTTCGTCGAAATTTCTAAACTTTTCCTATTATCCTTGTCAGAGAAAAAAAGGTTGAGTCGAAGTGTGTGCGATGTTTATAAACAAATATCTGAAAACGTAAACAACCGGAAACATTTGAAACGAGTGCGACAGTA</canonical>
            <polymorphic>GTAGAAAAGAAAGGAGAAATGGTGACCGCAGAAGTGATCCGGCTGACAAACCAGTGGATATTGTCACTGTTGAGCAAAATAAGCGAGCTAGAGCTATTCGATTCGGTCTCCCAGTCACTGCGGAGGATCTGGGCTCGGAAGATGCTAAAGCAGCAAGAGCTAAGAGGTAAGAACTAGTTTTTGATGTCGAATTGACGAATTTGGAGTCAATGTCCATGAATTTTGATTAAGGCTGTTCTAAAAAAAAAAAGAAAGTTTTTTTGAATTTGGACTGCTCAAAAATGTGCTAGAATTGTGCTAGAATCTGCATCTGCATACCCTATTATTCAGTTCCCCCAAAATGCTTTTTTCTAGATTCGGCTTGCCAGAAGACGCAAAACGACTCGGTTCTGATGATGCCAAGGCCAGAAGAGCCGAAAGATTCGGAATCCAATCTCCAGCTACTGCTAAACAAGAAAAGGACGAGAAACTGGCTGCTCGTGCCGCTCGTTTCGGTCTTYCAGTAGGCGGTGCCTCTCCAAAAGTGGGCGGAGCCACAAAGGACGCGAAGCTGGCTGAAAGAGCCAAAAGATTCGGAGGAGCTGTGGATGATGCGGAAATGGAGGCGAAAAAGAAGGCTCGATTGGAGAGATTTGGAAATGGATCGAAATAAATTAACCTTTTTTTGTTATTGTACATTTTTCTATTTTTATCTGTTTAGGAGAACATGTGTGATTTTGAGAGGGGAAAATTGGAAAAACTATTCGCTGAAAATTCTCTATTTCCGCTAATTACAAGCATTTCGAGCCATCCCCTTCGAGTTGAAAAATCGATTTACCTTCAAAAATTCCATAGTTCTCTCCGCCTCTCCCGTCTCCCTTCAAAATTTCGTCGAAATTTCTAAACTTTTCCTATTATCCTTGTCAGAGAAAAAAAGGTTGAGTCGAAGTGTGTGCGATGTTTATAAACAAATATCTGAAAACGTAAACAACCGGAAACATTTGAAACGAGTGCGACAGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>506 476 18</canonical_bands>
                <polymorphic_bands>524 476</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATCTCCAGCTACTGCTAAAC</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGTTAATTTATTTCGATCC</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>CAATCTCCAGCTACTGCTAAACAAGAAAAGGACGAGAAACTGGCTGCTCGTGCCGCTCGTTTCGGTCTTCCAGTAGGCGGTGCCTCTCCAAAAGTGGGCGGAGCCACAAAGGACGCGAAGCTGGCTGAAAGAGCCAAAAGATTCGGAGGAGCTGTGGATGATGCGGAAATGGAGGCGAAAAAGAAGGCTCGATTGGAGAGATTTGGAAATGGATCGAAATAAATTAACCTTTT</canonical_amplicon>
		<polymorphic_amplicon>CAATCTCCAGCTACTGCTAAACAAGAAAAGGACGAGAAACTGGCTGCTCGTGCCGCTCGTTTCGGTCTTYCAGTAGGCGGTGCCTCTCCAAAAGTGGGCGGAGCCACAAAGGACGCGAAGCTGGCTGAAAGAGCCAAAAGATTCGGAGGAGCTGTGGATGATGCGGAAATGGAGGCGAAAAAGAAGGCTCGATTGGAGAGATTTGGAAATGGATCGAAATAAATTAACCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2727</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>206306</contig_pos>
        <strand></strand>
        <context>CTATAAATTT[G/A]ACAACCGCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAAAGAATCTGGGAGAACATGTGAGGAAATGGAAAATTGCTATAAATTT</left_flank>
        <right_flank>ACAACCGCAGAATTGGCTGGAAGAGTTGGTAGGTTGAACTTTTTCGAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTTTTGAGCTACCTTTTTTTTTGATCTACCATCATTATTAAGTTCAATAGTTATTAGTGGAGGTACCTGTTTTTTTTTGATTTTCATCATTTTTGATTTTTAAGTATTTTTAGTTTCAACAATTTCTAAAATTTCCAGAAAATGAGCAATCCACCAATCACAATGTACCAACGACATATTCTAGCTCAACTGATAGAATCTGGACTTTCAAATGATCAAATAATCAATCAATATCGTTTGATCTACGCTCGCAACCAAGAATTTCTGAAGACGTGGACGTCTTCTGAATCATCTGAATCCTCAAAAATGTCTTCTGGAGATTTTGTGACGACATCTTCCAGAATTCCAGAACCTCCACCGAAAATTCCAGTGATTTTCCGGAAAATCGATAATTATGATGAAAATTATGATCCACGAAGACTGGGAATATTGTTGAATTTGAGCAAAAAGAATCTGGGAGAACATGTGAGGAAATGGAAAATTGCTATAAATTTGACAACCGCAGAATTGGCTGGAAGAGTTGGTAGGTTGAACTTTTTCGAATTTTTTCAAATTTTTTTAAAAATTGGATTTTTTGAAATTTTCGATTTTTGACATCTAGAAACTTCTAGAATTGCCTTAAATGCTCTAAAAAAGTAGCAAAACCTTTTGCCGCCAAGAGGAATCGAACCTGGGTCGTCAGATTGGTAGTGGAAATTTCGGAAAATCCCACTGAGCCATTTGTGCATTTTCGGAAAAATCGCTCAAAAACACAAAAAAAAGAAATCTTGAGTGCTAGAAACTATTTTTATCATTTTTTCCGAGAAATTTGAATCTAGAATAGGTATTTCCATCGAGTTCGGAAAAAAAAACTTTTTTTCAAAAATTAGGATTTTTTGAAATTTTCGATTTTTGACATCTAGAAACTTCTAGAATAGCCTTAAATGCTTTAAAAAGGAAGAAAAAAAAGGTTTGCCGCTTAGTGGAATTGAACCTGTGTAGTCAAATTGGTAGTG</canonical>
            <polymorphic>ATTTTTTTTTGAGCTACCTTTTTTTTTGATCTACCATCATTATTAAGTTCAATAGTTATTAGTGGAGGTACCTGTTTTTTTTTGATTTTCATCATTTTTGATTTTTAAGTATTTTTAGTTTCAACAATTTCTAAAATTTCCAGAAAATGAGCAATCCACCAATCACAATGTACCAACGACATATTCTAGCTCAACTGATAGAATCTGGACTTTCAAATGATCAAATAATCAATCAATATCGTTTGATCTACGCTCGCAACCAAGAATTTCTGAAGACGTGGACGTCTTCTGAATCATCTGAATCCTCAAAAATGTCTTCTGGAGATTTTGTGACGACATCTTCCAGAATTCCAGAACCTCCACCGAAAATTCCAGTGATTTTCCGGAAAATCGATAATTATGATGAAAATTATGATCCACGAAGACTGGGAATATTGTTGAATTTGAGCAAAAAGAATCTGGGAGAACATGTGAGGAAATGGAAAATTGCTATAAATTTRACAACCGCAGAATTGGCTGGAAGAGTTGGTAGGTTGAACTTTTTCGAATTTTTTCAAATTTTTTTAAAAATTGGATTTTTTGAAATTTTCGATTTTTGACATCTAGAAACTTCTAGAATTGCCTTAAATGCTCTAAAAAAGTAGCAAAACCTTTTGCCGCCAAGAGGAATCGAACCTGGGTCGTCAGATTGGTAGTGGAAATTTCGGAAAATCCCACTGAGCCATTTGTGCATTTTCGGAAAAATCGCTCAAAAACACAAAAAAAAGAAATCTTGAGTGCTAGAAACTATTTTTATCATTTTTTCCGAGAAATTTGAATCTAGAATAGGTATTTCCATCGAGTTCGGAAAAAAAAACTTTTTTTCAAAAATTAGGATTTTTTGAAATTTTCGATTTTTGACATCTAGAAACTTCTAGAATAGCCTTAAATGCTTTAAAAAGGAAGAAAAAAAAGGTTTGCCGCTTAGTGGAATTGAACCTGTGTAGTCAAATTGGTAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGAATCTGGGAGAACAT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTCGTAGTGCAGACACC</pcr_primer_p2>
		<pcr_amplicon_size>758</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGAATCTGGGAGAACATGTGAGGAAATGGAAAATTGCTATAAATTTGACAACCGCAGAATTGGCTG</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGAATCTGGGAGAACATGTGAGGAAATGGAAAATTGCTATAAATTTRACAACCGCAGAATTGGCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2728</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>236652</contig_pos>
        <strand></strand>
        <context>atcggaaaat[T/G]acgaataatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CTCTATTTTCATTCTATATTGTCAAAAAGTTTTCTCACAAATCGGAAAAT</left_flank>
        <right_flank>ACGAATAATTTTTTTCAAGACTTCAAAATTAGATTCTCATTCTTTCAAAA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAACTTTAAAAGCGCATATTTCAAAAACTACGGTAGCTAGAAAAACTTAGCAAATTGAAAAAATGTGTAAAATTAAGTTTTAAATTCACTCATAATTATAAAATATGTCTAGGTACTGTAGTTTGAAGGTGTGCGTCTTTAAATTGGGCATGCTCTTCTGCTTGGCTCGCCCCAGGCGTACAGTAGGCAGACCAAATTTAAAGGCGCATACCTCAAGAACCACGGTAGCTAGAAAAAAGATGTCAATTAAAAAAGTATGTGAAATTAAATTTTACATTTACTGTTGTTAAAAAATTAGGTCTTGCTACTGTAGTTTTGGAGCTATGAGTCTTTAAAGTTAACGCACCTCATAGCCTGGCGCGCCATTCTGATGGGTGCGTCGCATTTAAAGGCGCATATCTCAAAAACTACAGTAGCTAGAAAAAAGCTGTCAATTACAAAATTGAAGCTCTATTTTCATTCTATATTGTCAAAAAGTTTTCTCACAAATCGGAAAATTACGAATAATTTTTTTCAAGACTTCAAAATTAGATTCTCATTCTTTCAAAAAGTATAAAATTTTCTAATATTGTTTTCCAAAATTTTGGCTCTATTGGTCCCCACTTTTTTTTGCCCAATTTTTTCTTGAATATTGAACTTTCCACCCAAGAAAATATCTGTACTTTTCTTCTCCTTTTAGGTCAAAAAACGTGGGATTCTTGAGAAAAATTTTTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAATATTTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACAGAAAACAAGTTATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAATTCGAGAAAAATTTTTTTTTTCTAAACATTCTGAAATTCCAGAAAACAATTTTTTTAGGTTGCCTCCCTCTCATTTGTGGAACGTTGTGCCGCAAAAGTGATCGGTCAAATTCCTGACGTCTCTTATCAAATGGCTCTTGACGATCTTCTGAAAGCAG</canonical>
            <polymorphic>TCAACTTTAAAAGCGCATATTTCAAAAACTACGGTAGCTAGAAAAACTTAGCAAATTGAAAAAATGTGTAAAATTAAGTTTTAAATTCACTCATAATTATAAAATATGTCTAGGTACTGTAGTTTGAAGGTGTGCGTCTTTAAATTGGGCATGCTCTTCTGCTTGGCTCGCCCCAGGCGTACAGTAGGCAGACCAAATTTAAAGGCGCATACCTCAAGAACCACGGTAGCTAGAAAAAAGATGTCAATTAAAAAAGTATGTGAAATTAAATTTTACATTTACTGTTGTTAAAAAATTAGGTCTTGCTACTGTAGTTTTGGAGCTATGAGTCTTTAAAGTTAACGCACCTCATAGCCTGGCGCGCCATTCTGATGGGTGCGTCGCATTTAAAGGCGCATATCTCAAAAACTACAGTAGCTAGAAAAAAGCTGTCAATTACAAAATTGAAGCTCTATTTTCATTCTATATTGTCAAAAAGTTTTCTCACAAATCGGAAAATKACGAATAATTTTTTTCAAGACTTCAAAATTAGATTCTCATTCTTTCAAAAAGTATAAAATTTTCTAATATTGTTTTCCAAAATTTTGGCTCTATTGGTCCCCACTTTTTTTTGCCCAATTTTTTCTTGAATATTGAACTTTCCACCCAAGAAAATATCTGTACTTTTCTTCTCCTTTTAGGTCAAAAAACGTGGGATTCTTGAGAAAAATTTTTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAATATTTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACAGAAAACAAGTTATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAATTCGAGAAAAATTTTTTTTTTCTAAACATTCTGAAATTCCAGAAAACAATTTTTTTAGGTTGCCTCCCTCTCATTTGTGGAACGTTGTGCCGCAAAAGTGATCGGTCAAATTCCTGACGTCTCTTATCAAATGGCTCTTGACGATCTTCTGAAAGCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>140 91 83 61 55 53 53 50 50 50 48 36 31 25 25 23 20 18 18 13 12 11 11 10 8 5</canonical_bands>
                <polymorphic_bands>140 91 83 65 61 53 53 50 50 50 48 36 31 25 25 23 20 18 18 13 12 11 11 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAAAGCATCCAAAGTGGT</pcr_primer_p1>
		<pcr_primer_p2>TTATACTTTTTGAAAGAATGAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>745</pcr_amplicon_size>
		<canonical_amplicon>TTACGAATAATTTTTTTCAAGACTTCAAAATTAGATTCTCATTCTTTCAAAAAGTATAA</canonical_amplicon>
		<polymorphic_amplicon>TKACGAATAATTTTTTTCAAGACTTCAAAATTAGATTCTCATTCTTTCAAAAAGTATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2729</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>236739</contig_pos>
        <strand>+</strand>
        <context>CCAAAATTTT[A/G]GCTCTATTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATTCTTTCAAAAAGTATAAAATTTTCTAATATTGTTTTCCAAAATTTT</left_flank>
        <right_flank>GCTCTATTGGTCCCCACTTTTTTTTGCCCAATTTTTTCTTGAATATTGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACTCATAATTATAAAATATGTCTAGGTACTGTAGTTTGAAGGTGTGCGTCTTTAAATTGGGCATGCTCTTCTGCTTGGCTCGCCCCAGGCGTACAGTAGGCAGACCAAATTTAAAGGCGCATACCTCAAGAACCACGGTAGCTAGAAAAAAGATGTCAATTAAAAAAGTATGTGAAATTAAATTTTACATTTACTGTTGTTAAAAAATTAGGTCTTGCTACTGTAGTTTTGGAGCTATGAGTCTTTAAAGTTAACGCACCTCATAGCCTGGCGCGCCATTCTGATGGGTGCGTCGCATTTAAAGGCGCATATCTCAAAAACTACAGTAGCTAGAAAAAAGCTGTCAATTACAAAATTGAAGCTCTATTTTCATTCTATATTGTCAAAAAGTTTTCTCACAAATCGGAAAATTACGAATAATTTTTTTCAAGACTTCAAAATTAGATTCTCATTCTTTCAAAAAGTATAAAATTTTCTAATATTGTTTTCCAAAATTTTGGCTCTATTGGTCCCCACTTTTTTTTGCCCAATTTTTTCTTGAATATTGAACTTTCCACCCAAGAAAATATCTGTACTTTTCTTCTCCTTTTAGGTCAAAAAACGTGGGATTCTTGAGAAAAATTTTTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAATATTTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACAGAAAACAAGTTATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAATTCGAGAAAAATTTTTTTTTTCTAAACATTCTGAAATTCCAGAAAACAATTTTTTTAGGTTGCCTCCCTCTCATTTGTGGAACGTTGTGCCGCAAAAGTGATCGGTCAAATTCCTGACGTCTCTTATCAAATGGCTCTTGACGATCTTCTGAAAGCAGATCATCTGGAAGAAGGCGTTGCTGAAAATCAGCTATTCATCGGAAAAACCTATTTGGCTATGGGCAATTTGGTCAAGGCCAAGAAAT</canonical>
            <polymorphic>CACTCATAATTATAAAATATGTCTAGGTACTGTAGTTTGAAGGTGTGCGTCTTTAAATTGGGCATGCTCTTCTGCTTGGCTCGCCCCAGGCGTACAGTAGGCAGACCAAATTTAAAGGCGCATACCTCAAGAACCACGGTAGCTAGAAAAAAGATGTCAATTAAAAAAGTATGTGAAATTAAATTTTACATTTACTGTTGTTAAAAAATTAGGTCTTGCTACTGTAGTTTTGGAGCTATGAGTCTTTAAAGTTAACGCACCTCATAGCCTGGCGCGCCATTCTGATGGGTGCGTCGCATTTAAAGGCGCATATCTCAAAAACTACAGTAGCTAGAAAAAAGCTGTCAATTACAAAATTGAAGCTCTATTTTCATTCTATATTGTCAAAAAGTTTTCTCACAAATCGGAAAATTACGAATAATTTTTTTCAAGACTTCAAAATTAGATTCTCATTCTTTCAAAAAGTATAAAATTTTCTAATATTGTTTTCCAAAATTTTRGCTCTATTGGTCCCCACTTTTTTTTGCCCAATTTTTTCTTGAATATTGAACTTTCCACCCAAGAAAATATCTGTACTTTTCTTCTCCTTTTAGGTCAAAAAACGTGGGATTCTTGAGAAAAATTTTTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAATATTTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACAGAAAACAAGTTATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAATTCGAGAAAAATTTTTTTTTTCTAAACATTCTGAAATTCCAGAAAACAATTTTTTTAGGTTGCCTCCCTCTCATTTGTGGAACGTTGTGCCGCAAAAGTGATCGGTCAAATTCCTGACGTCTCTTATCAAATGGCTCTTGACGATCTTCTGAAAGCAGATCATCTGGAAGAAGGCGTTGCTGAAAATCAGCTATTCATCGGAAAAACCTATTTGGCTATGGGCAATTTGGTCAAGGCCAAGAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>BstXI</enzyme>
                </isoschizomers>
                <canonical_bands>503 284 213</canonical_bands>
                <polymorphic_bands>716 284</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>388 139 93 79 63 63 56 32 25 21 21 11 9</canonical_bands>
                <polymorphic_bands>527 93 79 63 63 56 32 25 21 21 11 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAAAGCATCCAAAGTGGT</pcr_primer_p1>
		<pcr_primer_p2>TGGAAAGTTCAATATTCAAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>832</pcr_amplicon_size>
		<canonical_amplicon>TGGCTCTATTGGTCCCCACTTTTTTTTGCCCAATTTTTTCTTGAATATTGAACTTTCCA</canonical_amplicon>
		<polymorphic_amplicon>TRGCTCTATTGGTCCCCACTTTTTTTTGCCCAATTTTTTCTTGAATATTGAACTTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2730</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>236859</contig_pos>
        <strand>+</strand>
        <context>TTCTTGAGAA[A/T]AATTTTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTGTACTTTTCTTCTCCTTTTAGGTCAAAAAACGTGGGATTCTTGAGAA</left_flank>
        <right_flank>AATTTTTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAATATTTGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATACCTCAAGAACCACGGTAGCTAGAAAAAAGATGTCAATTAAAAAAGTATGTGAAATTAAATTTTACATTTACTGTTGTTAAAAAATTAGGTCTTGCTACTGTAGTTTTGGAGCTATGAGTCTTTAAAGTTAACGCACCTCATAGCCTGGCGCGCCATTCTGATGGGTGCGTCGCATTTAAAGGCGCATATCTCAAAAACTACAGTAGCTAGAAAAAAGCTGTCAATTACAAAATTGAAGCTCTATTTTCATTCTATATTGTCAAAAAGTTTTCTCACAAATCGGAAAATTACGAATAATTTTTTTCAAGACTTCAAAATTAGATTCTCATTCTTTCAAAAAGTATAAAATTTTCTAATATTGTTTTCCAAAATTTTGGCTCTATTGGTCCCCACTTTTTTTTGCCCAATTTTTTCTTGAATATTGAACTTTCCACCCAAGAAAATATCTGTACTTTTCTTCTCCTTTTAGGTCAAAAAACGTGGGATTCTTGAGAAAAATTTTTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAATATTTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACAGAAAACAAGTTATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAATTCGAGAAAAATTTTTTTTTTCTAAACATTCTGAAATTCCAGAAAACAATTTTTTTAGGTTGCCTCCCTCTCATTTGTGGAACGTTGTGCCGCAAAAGTGATCGGTCAAATTCCTGACGTCTCTTATCAAATGGCTCTTGACGATCTTCTGAAAGCAGATCATCTGGAAGAAGGCGTTGCTGAAAATCAGCTATTCATCGGAAAAACCTATTTGGCTATGGGCAATTTGGTCAAGGCCAAGAAATGGTTGGTCAAGGTAAAGAATTGCAAAAAAGTGAGACACCAAAAATGCGTCAAGGTACTAGAAATGCGCCAGGTCATTAGAAATGTGTCAAGTCCCTATAAATGCGTCAGAGACACTAAAA</canonical>
            <polymorphic>CATACCTCAAGAACCACGGTAGCTAGAAAAAAGATGTCAATTAAAAAAGTATGTGAAATTAAATTTTACATTTACTGTTGTTAAAAAATTAGGTCTTGCTACTGTAGTTTTGGAGCTATGAGTCTTTAAAGTTAACGCACCTCATAGCCTGGCGCGCCATTCTGATGGGTGCGTCGCATTTAAAGGCGCATATCTCAAAAACTACAGTAGCTAGAAAAAAGCTGTCAATTACAAAATTGAAGCTCTATTTTCATTCTATATTGTCAAAAAGTTTTCTCACAAATCGGAAAATTACGAATAATTTTTTTCAAGACTTCAAAATTAGATTCTCATTCTTTCAAAAAGTATAAAATTTTCTAATATTGTTTTCCAAAATTTTGGCTCTATTGGTCCCCACTTTTTTTTGCCCAATTTTTTCTTGAATATTGAACTTTCCACCCAAGAAAATATCTGTACTTTTCTTCTCCTTTTAGGTCAAAAAACGTGGGATTCTTGAGAAWAATTTTTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAATATTTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACAGAAAACAAGTTATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAATTCGAGAAAAATTTTTTTTTTCTAAACATTCTGAAATTCCAGAAAACAATTTTTTTAGGTTGCCTCCCTCTCATTTGTGGAACGTTGTGCCGCAAAAGTGATCGGTCAAATTCCTGACGTCTCTTATCAAATGGCTCTTGACGATCTTCTGAAAGCAGATCATCTGGAAGAAGGCGTTGCTGAAAATCAGCTATTCATCGGAAAAACCTATTTGGCTATGGGCAATTTGGTCAAGGCCAAGAAATGGTTGGTCAAGGTAAAGAATTGCAAAAAAGTGAGACACCAAAAATGCGTCAAGGTACTAGAAATGCGCCAGGTCATTAGAAATGTGTCAAGTCCCTATAAATGCGTCAGAGACACTAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>289 257 127 83 74 61 50 25 23 11</canonical_bands>
                <polymorphic_bands>289 257 177 83 74 61 25 23 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTATTGGTCCCCACTTTT</pcr_primer_p1>
		<pcr_primer_p2>GCAGGTACAAAGTACTTCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>193</pcr_amplicon_size>
		<canonical_amplicon>CTCTATTGGTCCCCACTTTTTTTTGCCCAATTTTTTCTTGAATATTGAACTTTCCACCCAAGAAAATATCTGTACTTTTCTTCTCCTTTTAGGTCAAAAAACGTGGGATTCTTGAGAAAAATTTTTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAATATTTGTAAATTCTGAAGTACTTTGTACCTGC</canonical_amplicon>
		<polymorphic_amplicon>CTCTATTGGTCCCCACTTTTTTTTGCCCAATTTTTTCTTGAATATTGAACTTTCCACCCAAGAAAATATCTGTACTTTTCTTCTCCTTTTAGGTCAAAAAACGTGGGATTCTTGAGAAWAATTTTTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAATATTTGTAAATTCTGAAGTACTTTGTACCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2731</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>236902</contig_pos>
        <strand>+</strand>
        <context>TTGTTGAAAA[A/T]ATTTGTAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGAGAAAAATTTTTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAA</left_flank>
        <right_flank>ATTTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACAGAAAACAA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAGTATGTGAAATTAAATTTTACATTTACTGTTGTTAAAAAATTAGGTCTTGCTACTGTAGTTTTGGAGCTATGAGTCTTTAAAGTTAACGCACCTCATAGCCTGGCGCGCCATTCTGATGGGTGCGTCGCATTTAAAGGCGCATATCTCAAAAACTACAGTAGCTAGAAAAAAGCTGTCAATTACAAAATTGAAGCTCTATTTTCATTCTATATTGTCAAAAAGTTTTCTCACAAATCGGAAAATTACGAATAATTTTTTTCAAGACTTCAAAATTAGATTCTCATTCTTTCAAAAAGTATAAAATTTTCTAATATTGTTTTCCAAAATTTTGGCTCTATTGGTCCCCACTTTTTTTTGCCCAATTTTTTCTTGAATATTGAACTTTCCACCCAAGAAAATATCTGTACTTTTCTTCTCCTTTTAGGTCAAAAAACGTGGGATTCTTGAGAAAAATTTTTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAATATTTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACAGAAAACAAGTTATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAATTCGAGAAAAATTTTTTTTTTCTAAACATTCTGAAATTCCAGAAAACAATTTTTTTAGGTTGCCTCCCTCTCATTTGTGGAACGTTGTGCCGCAAAAGTGATCGGTCAAATTCCTGACGTCTCTTATCAAATGGCTCTTGACGATCTTCTGAAAGCAGATCATCTGGAAGAAGGCGTTGCTGAAAATCAGCTATTCATCGGAAAAACCTATTTGGCTATGGGCAATTTGGTCAAGGCCAAGAAATGGTTGGTCAAGGTAAAGAATTGCAAAAAAGTGAGACACCAAAAATGCGTCAAGGTACTAGAAATGCGCCAGGTCATTAGAAATGTGTCAAGTCCCTATAAATGCGTCAGAGACACTAAAAAGGCGCCAAGTCACCGAAAATGCGCCAATACACGGGAAATGCG</canonical>
            <polymorphic>AAAAAGTATGTGAAATTAAATTTTACATTTACTGTTGTTAAAAAATTAGGTCTTGCTACTGTAGTTTTGGAGCTATGAGTCTTTAAAGTTAACGCACCTCATAGCCTGGCGCGCCATTCTGATGGGTGCGTCGCATTTAAAGGCGCATATCTCAAAAACTACAGTAGCTAGAAAAAAGCTGTCAATTACAAAATTGAAGCTCTATTTTCATTCTATATTGTCAAAAAGTTTTCTCACAAATCGGAAAATTACGAATAATTTTTTTCAAGACTTCAAAATTAGATTCTCATTCTTTCAAAAAGTATAAAATTTTCTAATATTGTTTTCCAAAATTTTGGCTCTATTGGTCCCCACTTTTTTTTGCCCAATTTTTTCTTGAATATTGAACTTTCCACCCAAGAAAATATCTGTACTTTTCTTCTCCTTTTAGGTCAAAAAACGTGGGATTCTTGAGAAAAATTTTTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAAWATTTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACAGAAAACAAGTTATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAATTCGAGAAAAATTTTTTTTTTCTAAACATTCTGAAATTCCAGAAAACAATTTTTTTAGGTTGCCTCCCTCTCATTTGTGGAACGTTGTGCCGCAAAAGTGATCGGTCAAATTCCTGACGTCTCTTATCAAATGGCTCTTGACGATCTTCTGAAAGCAGATCATCTGGAAGAAGGCGTTGCTGAAAATCAGCTATTCATCGGAAAAACCTATTTGGCTATGGGCAATTTGGTCAAGGCCAAGAAATGGTTGGTCAAGGTAAAGAATTGCAAAAAAGTGAGACACCAAAAATGCGTCAAGGTACTAGAAATGCGCCAGGTCATTAGAAATGTGTCAAGTCCCTATAAATGCGTCAGAGACACTAAAAAGGCGCCAAGTCACCGAAAATGCGCCAATACACGGGAAATGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 318 119 63</canonical_bands>
                <polymorphic_bands>619 318 63</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTTCTCCTTTTAGGTCAA</pcr_primer_p1>
		<pcr_primer_p2>AATTTGACCGATCACTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTTCTCCTTTTAGGTCAAAAAACGTGGGATTCTTGAGAAAAATTTTTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAATATTTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACAGAAAACAAGTTATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAATTCGAGAAAAATTTTTTTTTTCTAAACATTCTGAAATTCCAGAAAACAATTTTTTTAGGTTGCCTCCCTCTCATTTGTGGAACGTTGTGCCGCAAAAGTGATCGGTCAAATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTTCTCCTTTTAGGTCAAAAAACGTGGGATTCTTGAGAAAAATTTTTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAAWATTTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACAGAAAACAAGTTATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAATTCGAGAAAAATTTTTTTTTTCTAAACATTCTGAAATTCCAGAAAACAATTTTTTTAGGTTGCCTCCCTCTCATTTGTGGAACGTTGTGCCGCAAAAGTGATCGGTCAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2732</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>236945</contig_pos>
        <strand>+</strand>
        <context>AAAGGAGACA[A/G]AAAACAAGTY</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAAAATATTTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACA</left_flank>
        <right_flank>AAAACAAGTTATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTAGGTCTTGCTACTGTAGTTTTGGAGCTATGAGTCTTTAAAGTTAACGCACCTCATAGCCTGGCGCGCCATTCTGATGGGTGCGTCGCATTTAAAGGCGCATATCTCAAAAACTACAGTAGCTAGAAAAAAGCTGTCAATTACAAAATTGAAGCTCTATTTTCATTCTATATTGTCAAAAAGTTTTCTCACAAATCGGAAAATTACGAATAATTTTTTTCAAGACTTCAAAATTAGATTCTCATTCTTTCAAAAAGTATAAAATTTTCTAATATTGTTTTCCAAAATTTTGGCTCTATTGGTCCCCACTTTTTTTTGCCCAATTTTTTCTTGAATATTGAACTTTCCACCCAAGAAAATATCTGTACTTTTCTTCTCCTTTTAGGTCAAAAAACGTGGGATTCTTGAGAAAAATTTTTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAATATTTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACAGAAAACAAGTTATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAATTCGAGAAAAATTTTTTTTTTCTAAACATTCTGAAATTCCAGAAAACAATTTTTTTAGGTTGCCTCCCTCTCATTTGTGGAACGTTGTGCCGCAAAAGTGATCGGTCAAATTCCTGACGTCTCTTATCAAATGGCTCTTGACGATCTTCTGAAAGCAGATCATCTGGAAGAAGGCGTTGCTGAAAATCAGCTATTCATCGGAAAAACCTATTTGGCTATGGGCAATTTGGTCAAGGCCAAGAAATGGTTGGTCAAGGTAAAGAATTGCAAAAAAGTGAGACACCAAAAATGCGTCAAGGTACTAGAAATGCGCCAGGTCATTAGAAATGTGTCAAGTCCCTATAAATGCGTCAGAGACACTAAAAAGGCGCCAAGTCACCGAAAATGCGCCAATACACGGGAAATGCGTTAAGTCATTGAAAAGGCACCAAGTCACCCAAAATGCGTCATG</canonical>
            <polymorphic>AATTAGGTCTTGCTACTGTAGTTTTGGAGCTATGAGTCTTTAAAGTTAACGCACCTCATAGCCTGGCGCGCCATTCTGATGGGTGCGTCGCATTTAAAGGCGCATATCTCAAAAACTACAGTAGCTAGAAAAAAGCTGTCAATTACAAAATTGAAGCTCTATTTTCATTCTATATTGTCAAAAAGTTTTCTCACAAATCGGAAAATTACGAATAATTTTTTTCAAGACTTCAAAATTAGATTCTCATTCTTTCAAAAAGTATAAAATTTTCTAATATTGTTTTCCAAAATTTTGGCTCTATTGGTCCCCACTTTTTTTTGCCCAATTTTTTCTTGAATATTGAACTTTCCACCCAAGAAAATATCTGTACTTTTCTTCTCCTTTTAGGTCAAAAAACGTGGGATTCTTGAGAAAAATTTTTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAATATTTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACARAAAACAAGTTATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAATTCGAGAAAAATTTTTTTTTTCTAAACATTCTGAAATTCCAGAAAACAATTTTTTTAGGTTGCCTCCCTCTCATTTGTGGAACGTTGTGCCGCAAAAGTGATCGGTCAAATTCCTGACGTCTCTTATCAAATGGCTCTTGACGATCTTCTGAAAGCAGATCATCTGGAAGAAGGCGTTGCTGAAAATCAGCTATTCATCGGAAAAACCTATTTGGCTATGGGCAATTTGGTCAAGGCCAAGAAATGGTTGGTCAAGGTAAAGAATTGCAAAAAAGTGAGACACCAAAAATGCGTCAAGGTACTAGAAATGCGCCAGGTCATTAGAAATGTGTCAAGTCCCTATAAATGCGTCAGAGACACTAAAAAGGCGCCAAGTCACCGAAAATGCGCCAATACACGGGAAATGCGTTAAGTCATTGAAAAGGCACCAAGTCACCCAAAATGCGTCATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTGTCACTTTTTAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AATTTGACCGATCACTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAATATTTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACAGAAAACAAGTTATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAATTCGAGAAAAATTTTTTTTTTCTAAACATTCTGAAATTCCAGAAAACAATTTTTTTAGGTTGCCTCCCTCTCATTTGTGGAACGTTGTGCCGCAAAAGTGATCGGTCAAATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAATATTTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACARAAAACAAGTTATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAATTCGAGAAAAATTTTTTTTTTCTAAACATTCTGAAATTCCAGAAAACAATTTTTTTAGGTTGCCTCCCTCTCATTTGTGGAACGTTGTGCCGCAAAAGTGATCGGTCAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2733</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>236955</contig_pos>
        <strand>+</strand>
        <context>RAAAACAAGT[C/T]ATAAATCTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACAGAAAACAAGT</left_flank>
        <right_flank>ATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAATTCGAGAAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCTACTGTAGTTTTGGAGCTATGAGTCTTTAAAGTTAACGCACCTCATAGCCTGGCGCGCCATTCTGATGGGTGCGTCGCATTTAAAGGCGCATATCTCAAAAACTACAGTAGCTAGAAAAAAGCTGTCAATTACAAAATTGAAGCTCTATTTTCATTCTATATTGTCAAAAAGTTTTCTCACAAATCGGAAAATTACGAATAATTTTTTTCAAGACTTCAAAATTAGATTCTCATTCTTTCAAAAAGTATAAAATTTTCTAATATTGTTTTCCAAAATTTTGGCTCTATTGGTCCCCACTTTTTTTTGCCCAATTTTTTCTTGAATATTGAACTTTCCACCCAAGAAAATATCTGTACTTTTCTTCTCCTTTTAGGTCAAAAAACGTGGGATTCTTGAGAAAAATTTTTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAATATTTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACAGAAAACAAGTTATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAATTCGAGAAAAATTTTTTTTTTCTAAACATTCTGAAATTCCAGAAAACAATTTTTTTAGGTTGCCTCCCTCTCATTTGTGGAACGTTGTGCCGCAAAAGTGATCGGTCAAATTCCTGACGTCTCTTATCAAATGGCTCTTGACGATCTTCTGAAAGCAGATCATCTGGAAGAAGGCGTTGCTGAAAATCAGCTATTCATCGGAAAAACCTATTTGGCTATGGGCAATTTGGTCAAGGCCAAGAAATGGTTGGTCAAGGTAAAGAATTGCAAAAAAGTGAGACACCAAAAATGCGTCAAGGTACTAGAAATGCGCCAGGTCATTAGAAATGTGTCAAGTCCCTATAAATGCGTCAGAGACACTAAAAAGGCGCCAAGTCACCGAAAATGCGCCAATACACGGGAAATGCGTTAAGTCATTGAAAAGGCACCAAGTCACCCAAAATGCGTCATGAGGTTCAAGA</canonical>
            <polymorphic>TGCTACTGTAGTTTTGGAGCTATGAGTCTTTAAAGTTAACGCACCTCATAGCCTGGCGCGCCATTCTGATGGGTGCGTCGCATTTAAAGGCGCATATCTCAAAAACTACAGTAGCTAGAAAAAAGCTGTCAATTACAAAATTGAAGCTCTATTTTCATTCTATATTGTCAAAAAGTTTTCTCACAAATCGGAAAATTACGAATAATTTTTTTCAAGACTTCAAAATTAGATTCTCATTCTTTCAAAAAGTATAAAATTTTCTAATATTGTTTTCCAAAATTTTGGCTCTATTGGTCCCCACTTTTTTTTGCCCAATTTTTTCTTGAATATTGAACTTTCCACCCAAGAAAATATCTGTACTTTTCTTCTCCTTTTAGGTCAAAAAACGTGGGATTCTTGAGAAAAATTTTTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAATATTTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACAGAAAACAAGTYATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAATTCGAGAAAAATTTTTTTTTTCTAAACATTCTGAAATTCCAGAAAACAATTTTTTTAGGTTGCCTCCCTCTCATTTGTGGAACGTTGTGCCGCAAAAGTGATCGGTCAAATTCCTGACGTCTCTTATCAAATGGCTCTTGACGATCTTCTGAAAGCAGATCATCTGGAAGAAGGCGTTGCTGAAAATCAGCTATTCATCGGAAAAACCTATTTGGCTATGGGCAATTTGGTCAAGGCCAAGAAATGGTTGGTCAAGGTAAAGAATTGCAAAAAAGTGAGACACCAAAAATGCGTCAAGGTACTAGAAATGCGCCAGGTCATTAGAAATGTGTCAAGTCCCTATAAATGCGTCAGAGACACTAAAAAGGCGCCAAGTCACCGAAAATGCGCCAATACACGGGAAATGCGTTAAGTCATTGAAAAGGCACCAAGTCACCCAAAATGCGTCATGAGGTTCAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTGTCACTTTTTAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AATTTGACCGATCACTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAATATTTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACAGAAAACAAGTTATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAATTCGAGAAAAATTTTTTTTTTCTAAACATTCTGAAATTCCAGAAAACAATTTTTTTAGGTTGCCTCCCTCTCATTTGTGGAACGTTGTGCCGCAAAAGTGATCGGTCAAATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAATATTTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACAGAAAACAAGTYATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAATTCGAGAAAAATTTTTTTTTTCTAAACATTCTGAAATTCCAGAAAACAATTTTTTTAGGTTGCCTCCCTCTCATTTGTGGAACGTTGTGCCGCAAAAGTGATCGGTCAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2734</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>237021</contig_pos>
        <strand></strand>
        <context>TTTTTCTAAA[C/A]ATTCTGAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AACAAAAAATCGATTGGAAAAAAATTCGAGAAAAATTTTTTTTTTCTAAA</left_flank>
        <right_flank>ATTCTGAAATTCCAGAAAACAATTTTTTTAGGTTGCCTCCCTCTCATTTG</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATGGGTGCGTCGCATTTAAAGGCGCATATCTCAAAAACTACAGTAGCTAGAAAAAAGCTGTCAATTACAAAATTGAAGCTCTATTTTCATTCTATATTGTCAAAAAGTTTTCTCACAAATCGGAAAATTACGAATAATTTTTTTCAAGACTTCAAAATTAGATTCTCATTCTTTCAAAAAGTATAAAATTTTCTAATATTGTTTTCCAAAATTTTGGCTCTATTGGTCCCCACTTTTTTTTGCCCAATTTTTTCTTGAATATTGAACTTTCCACCCAAGAAAATATCTGTACTTTTCTTCTCCTTTTAGGTCAAAAAACGTGGGATTCTTGAGAAAAATTTTTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAATATTTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACAGAAAACAAGTTATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAATTCGAGAAAAATTTTTTTTTTCTAAACATTCTGAAATTCCAGAAAACAATTTTTTTAGGTTGCCTCCCTCTCATTTGTGGAACGTTGTGCCGCAAAAGTGATCGGTCAAATTCCTGACGTCTCTTATCAAATGGCTCTTGACGATCTTCTGAAAGCAGATCATCTGGAAGAAGGCGTTGCTGAAAATCAGCTATTCATCGGAAAAACCTATTTGGCTATGGGCAATTTGGTCAAGGCCAAGAAATGGTTGGTCAAGGTAAAGAATTGCAAAAAAGTGAGACACCAAAAATGCGTCAAGGTACTAGAAATGCGCCAGGTCATTAGAAATGTGTCAAGTCCCTATAAATGCGTCAGAGACACTAAAAAGGCGCCAAGTCACCGAAAATGCGCCAATACACGGGAAATGCGTTAAGTCATTGAAAAGGCACCAAGTCACCCAAAATGCGTCATGAGGTTCAAGATTTTTTCATAGACACTAAAAGCGCGTCAAGGCACCAAAAGCGCGCCAAGGCATCCAGAATGCGCCA</canonical>
            <polymorphic>TGATGGGTGCGTCGCATTTAAAGGCGCATATCTCAAAAACTACAGTAGCTAGAAAAAAGCTGTCAATTACAAAATTGAAGCTCTATTTTCATTCTATATTGTCAAAAAGTTTTCTCACAAATCGGAAAATTACGAATAATTTTTTTCAAGACTTCAAAATTAGATTCTCATTCTTTCAAAAAGTATAAAATTTTCTAATATTGTTTTCCAAAATTTTGGCTCTATTGGTCCCCACTTTTTTTTGCCCAATTTTTTCTTGAATATTGAACTTTCCACCCAAGAAAATATCTGTACTTTTCTTCTCCTTTTAGGTCAAAAAACGTGGGATTCTTGAGAAAAATTTTTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAATATTTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACAGAAAACAAGTTATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAATTCGAGAAAAATTTTTTTTTTCTAAAMATTCTGAAATTCCAGAAAACAATTTTTTTAGGTTGCCTCCCTCTCATTTGTGGAACGTTGTGCCGCAAAAGTGATCGGTCAAATTCCTGACGTCTCTTATCAAATGGCTCTTGACGATCTTCTGAAAGCAGATCATCTGGAAGAAGGCGTTGCTGAAAATCAGCTATTCATCGGAAAAACCTATTTGGCTATGGGCAATTTGGTCAAGGCCAAGAAATGGTTGGTCAAGGTAAAGAATTGCAAAAAAGTGAGACACCAAAAATGCGTCAAGGTACTAGAAATGCGCCAGGTCATTAGAAATGTGTCAAGTCCCTATAAATGCGTCAGAGACACTAAAAAGGCGCCAAGTCACCGAAAATGCGCCAATACACGGGAAATGCGTTAAGTCATTGAAAAGGCACCAAGTCACCCAAAATGCGTCATGAGGTTCAAGATTTTTTCATAGACACTAAAAGCGCGTCAAGGCACCAAAAGCGCGCCAAGGCATCCAGAATGCGCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTGTCACTTTTTAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AATTTGACCGATCACTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAATATTTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACAGAAAACAAGTTATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAATTCGAGAAAAATTTTTTTTTTCTAAACATTCTGAAATTCCAGAAAACAATTTTTTTAGGTTGCCTCCCTCTCATTTGTGGAACGTTGTGCCGCAAAAGTGATCGGTCAAATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAATATTTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACAGAAAACAAGTTATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAATTCGAGAAAAATTTTTTTTTTCTAAAMATTCTGAAATTCCAGAAAACAATTTTTTTAGGTTGCCTCCCTCTCATTTGTGGAACGTTGTGCCGCAAAAGTGATCGGTCAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2735</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>239752</contig_pos>
        <strand></strand>
        <context>TGAGKYTTTG[G/A]TCTGAAATTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAGGAAATGGATCAAATTAGGTCAGAAAAAGAGGAAAATATGAGTCTTTG</left_flank>
        <right_flank>TCTGAAATTCTCATAGAAATTGTTTCAAAAAAACTGGAAAATTCAAATCT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGAAGTTCAAGTTTTGCTTAGTATACTCTGAAGTTTTCAGCCAAAAAACTTACATGACTTGTGAGACGAGCAGCACAGCAAATAGTAGTAATATAATCCAGCGCCGCATCGGCGCCATTTGTGTTACCTGCAAAATTTGAAAGGTTTGGCGGAAATTCAAATTTCTATTCAGATTTTAAAGTTTAGATAATTGAGATGAGTAAACAGGAAAAATTGAGCCCAAATTCAGAGAATTAAAAATTTCAAAAAAGAGCCAAAAAACTTTTTTTTGGATTTCCTGAAAAAGGAAAAAAATAGGGAGAACTTGAAAAGAAAATTATAGGTTTCGGGGACATTTTTAGGTAAAAAAGTGGAGTTTTTTTCTATTTTTAGAATCTTTTTTTTTGGGATTTTTTTTTCTGGAAAATTGGAAAAAATGTGTGTGGGAAGAAAAAAGGATAATCAATGAGGAAATGGATCAAATTAGGTCAGAAAAAGAGGAAAATATGAGTCTTTGGTCTGAAATTCTCATAGAAATTGTTTCAAAAAAACTGGAAAATTCAAATCTTGAAAATTCAGAACTTCCAAAAATTGTGATTTTTAGAAAATGTGATATTAAAAATTCAAATTTTGAAAGAAAACAAAAATTTTCGAAAGCTGAGAAATCTAGCAATTCTGAAAACCCAAAACTTTTCCAATAATCAAAAAATTCTGATTTTCTCAAAATCCTAAATTTTAAGAAAATCTGAAATATCTGAAAATCCAAAAAATTTAAGAAACCTGAAATTTCTAGAAATCCCAAATTTAGAAAAATCTAGAATTTTTGAAAATCAATAAATTTGGAAATTTCTAAAAATTCAAACATTTTGGAAAATCTATAATTTCCTAAAATCTAGAAAATTTAGAAATCTGATGTTTCTGAAAATCCAAAATTTCTAAAAATCAACTTTCCAACATTTAAACAAGAGTTTCGAATTTTCTGAAATTCTGGATTTTCAGACTTTTTTTTTTGAAATCT</canonical>
            <polymorphic>AAATGAAGTTCAAGTTTTGCTTAGTATACTCTGAAGTTTTCAGCCAAAAAACTTACATGACTTGTGAGACGAGCAGCACAGCAAATAGTAGTAATATAATCCAGCGCCGCATCGGCGCCATTTGTGTTACCTGCAAAATTTGAAAGGTTTGGCGGAAATTCAAATTTCTATTCAGATTTTAAAGTTTAGATAATTGAGATGAGTAAACAGGAAAAATTGAGCCCAAATTCAGAGAATTAAAAATTTCAAAAAAGAGCCAAAAAACTTTTTTTTGGATTTCCTGAAAAAGGAAAAAAATAGGGAGAACTTGAAAAGAAAATTATAGGTTTCGGGGACATTTTTAGGTAAAAAAGTGGAGTTTTTTTCTATTTTTAGAATCTTTTTTTTTGGGATTTTTTTTTCTGGAAAATTGGAAAAAATGTGTGTGGGAAGAAAAAAGGATAATCAATGAGGAAATGGATCAAATTAGGTCAGAAAAAGAGGAAAATATGAGTCTTTGRTCTGAAATTCTCATAGAAATTGTTTCAAAAAAACTGGAAAATTCAAATCTTGAAAATTCAGAACTTCCAAAAATTGTGATTTTTAGAAAATGTGATATTAAAAATTCAAATTTTGAAAGAAAACAAAAATTTTCGAAAGCTGAGAAATCTAGCAATTCTGAAAACCCAAAACTTTTCCAATAATCAAAAAATTCTGATTTTCTCAAAATCCTAAATTTTAAGAAAATCTGAAATATCTGAAAATCCAAAAAATTTAAGAAACCTGAAATTTCTAGAAATCCCAAATTTAGAAAAATCTAGAATTTTTGAAAATCAATAAATTTGGAAATTTCTAAAAATTCAAACATTTTGGAAAATCTATAATTTCCTAAAATCTAGAAAATTTAGAAATCTGATGTTTCTGAAAATCCAAAATTTCTAAAAATCAACTTTCCAACATTTAAACAAGAGTTTCGAATTTTCTGAAATTCTGGATTTTCAGACTTTTTTTTTTGAAATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGGATAATCAATGAGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGTTTTGGGTTTTCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AAAAGGATAATCAATGAGGAAATGGATCAAATTAGGTCAGAAAAAGAGGAAAATATGAGTCTTTGGTCTGAAATTCTCATAGAAATTGTTTCAAAAAAACTGGAAAATTCAAATCTTGAAAATTCAGAACTTCCAAAAATTGTGATTTTTAGAAAATGTGATATTAAAAATTCAAATTTTGAAAGAAAACAAAAATTTTCGAAAGCTGAGAAATCTAGCAATTCTGAAAACCCAAAACTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGGATAATCAATGAGGAAATGGATCAAATTAGGTCAGAAAAAGAGGAAAATATGAGTCTTTGRTCTGAAATTCTCATAGAAATTGTTTCAAAAAAACTGGAAAATTCAAATCTTGAAAATTCAGAACTTCCAAAAATTGTGATTTTTAGAAAATGTGATATTAAAAATTCAAATTTTGAAAGAAAACAAAAATTTTCGAAAGCTGAGAAATCTAGCAATTCTGAAAACCCAAAACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2736</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>239747</contig_pos>
        <strand></strand>
        <context>AAATATGAGK[C/T]TTTGRTCTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAATGAGGAAATGGATCAAATTAGGTCAGAAAAAGAGGAAAATATGAGT</left_flank>
        <right_flank>TTTGGTCTGAAATTCTCATAGAAATTGTTTCAAAAAAACTGGAAAATTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACAAAAATGAAGTTCAAGTTTTGCTTAGTATACTCTGAAGTTTTCAGCCAAAAAACTTACATGACTTGTGAGACGAGCAGCACAGCAAATAGTAGTAATATAATCCAGCGCCGCATCGGCGCCATTTGTGTTACCTGCAAAATTTGAAAGGTTTGGCGGAAATTCAAATTTCTATTCAGATTTTAAAGTTTAGATAATTGAGATGAGTAAACAGGAAAAATTGAGCCCAAATTCAGAGAATTAAAAATTTCAAAAAAGAGCCAAAAAACTTTTTTTTGGATTTCCTGAAAAAGGAAAAAAATAGGGAGAACTTGAAAAGAAAATTATAGGTTTCGGGGACATTTTTAGGTAAAAAAGTGGAGTTTTTTTCTATTTTTAGAATCTTTTTTTTTGGGATTTTTTTTTCTGGAAAATTGGAAAAAATGTGTGTGGGAAGAAAAAAGGATAATCAATGAGGAAATGGATCAAATTAGGTCAGAAAAAGAGGAAAATATGAGTCTTTGGTCTGAAATTCTCATAGAAATTGTTTCAAAAAAACTGGAAAATTCAAATCTTGAAAATTCAGAACTTCCAAAAATTGTGATTTTTAGAAAATGTGATATTAAAAATTCAAATTTTGAAAGAAAACAAAAATTTTCGAAAGCTGAGAAATCTAGCAATTCTGAAAACCCAAAACTTTTCCAATAATCAAAAAATTCTGATTTTCTCAAAATCCTAAATTTTAAGAAAATCTGAAATATCTGAAAATCCAAAAAATTTAAGAAACCTGAAATTTCTAGAAATCCCAAATTTAGAAAAATCTAGAATTTTTGAAAATCAATAAATTTGGAAATTTCTAAAAATTCAAACATTTTGGAAAATCTATAATTTCCTAAAATCTAGAAAATTTAGAAATCTGATGTTTCTGAAAATCCAAAATTTCTAAAAATCAACTTTCCAACATTTAAACAAGAGTTTCGAATTTTCTGAAATTCTGGATTTTCAGACTTTTTTTTTTGA</canonical>
            <polymorphic>TACAAAAATGAAGTTCAAGTTTTGCTTAGTATACTCTGAAGTTTTCAGCCAAAAAACTTACATGACTTGTGAGACGAGCAGCACAGCAAATAGTAGTAATATAATCCAGCGCCGCATCGGCGCCATTTGTGTTACCTGCAAAATTTGAAAGGTTTGGCGGAAATTCAAATTTCTATTCAGATTTTAAAGTTTAGATAATTGAGATGAGTAAACAGGAAAAATTGAGCCCAAATTCAGAGAATTAAAAATTTCAAAAAAGAGCCAAAAAACTTTTTTTTGGATTTCCTGAAAAAGGAAAAAAATAGGGAGAACTTGAAAAGAAAATTATAGGTTTCGGGGACATTTTTAGGTAAAAAAGTGGAGTTTTTTTCTATTTTTAGAATCTTTTTTTTTGGGATTTTTTTTTCTGGAAAATTGGAAAAAATGTGTGTGGGAAGAAAAAAGGATAATCAATGAGGAAATGGATCAAATTAGGTCAGAAAAAGAGGAAAATATGAGTYTTTGGTCTGAAATTCTCATAGAAATTGTTTCAAAAAAACTGGAAAATTCAAATCTTGAAAATTCAGAACTTCCAAAAATTGTGATTTTTAGAAAATGTGATATTAAAAATTCAAATTTTGAAAGAAAACAAAAATTTTCGAAAGCTGAGAAATCTAGCAATTCTGAAAACCCAAAACTTTTCCAATAATCAAAAAATTCTGATTTTCTCAAAATCCTAAATTTTAAGAAAATCTGAAATATCTGAAAATCCAAAAAATTTAAGAAACCTGAAATTTCTAGAAATCCCAAATTTAGAAAAATCTAGAATTTTTGAAAATCAATAAATTTGGAAATTTCTAAAAATTCAAACATTTTGGAAAATCTATAATTTCCTAAAATCTAGAAAATTTAGAAATCTGATGTTTCTGAAAATCCAAAATTTCTAAAAATCAACTTTCCAACATTTAAACAAGAGTTTCGAATTTTCTGAAATTCTGGATTTTCAGACTTTTTTTTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>504 380 116</canonical_bands>
                <polymorphic_bands>620 380</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGGATAATCAATGAGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGTTTTGGGTTTTCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AAAAGGATAATCAATGAGGAAATGGATCAAATTAGGTCAGAAAAAGAGGAAAATATGAGTCTTTGGTCTGAAATTCTCATAGAAATTGTTTCAAAAAAACTGGAAAATTCAAATCTTGAAAATTCAGAACTTCCAAAAATTGTGATTTTTAGAAAATGTGATATTAAAAATTCAAATTTTGAAAGAAAACAAAAATTTTCGAAAGCTGAGAAATCTAGCAATTCTGAAAACCCAAAACTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGGATAATCAATGAGGAAATGGATCAAATTAGGTCAGAAAAAGAGGAAAATATGAGTYTTTGGTCTGAAATTCTCATAGAAATTGTTTCAAAAAAACTGGAAAATTCAAATCTTGAAAATTCAGAACTTCCAAAAATTGTGATTTTTAGAAAATGTGATATTAAAAATTCAAATTTTGAAAGAAAACAAAAATTTTCGAAAGCTGAGAAATCTAGCAATTCTGAAAACCCAAAACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2737</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>239746</contig_pos>
        <strand></strand>
        <context>AAAATATGAG[T/G]YTTTGRTCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATCAATGAGGAAATGGATCAAATTAGGTCAGAAAAAGAGGAAAATATGAG</left_flank>
        <right_flank>CTTTGGTCTGAAATTCTCATAGAAATTGTTTCAAAAAAACTGGAAAATTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTACAAAAATGAAGTTCAAGTTTTGCTTAGTATACTCTGAAGTTTTCAGCCAAAAAACTTACATGACTTGTGAGACGAGCAGCACAGCAAATAGTAGTAATATAATCCAGCGCCGCATCGGCGCCATTTGTGTTACCTGCAAAATTTGAAAGGTTTGGCGGAAATTCAAATTTCTATTCAGATTTTAAAGTTTAGATAATTGAGATGAGTAAACAGGAAAAATTGAGCCCAAATTCAGAGAATTAAAAATTTCAAAAAAGAGCCAAAAAACTTTTTTTTGGATTTCCTGAAAAAGGAAAAAAATAGGGAGAACTTGAAAAGAAAATTATAGGTTTCGGGGACATTTTTAGGTAAAAAAGTGGAGTTTTTTTCTATTTTTAGAATCTTTTTTTTTGGGATTTTTTTTTCTGGAAAATTGGAAAAAATGTGTGTGGGAAGAAAAAAGGATAATCAATGAGGAAATGGATCAAATTAGGTCAGAAAAAGAGGAAAATATGAGTCTTTGGTCTGAAATTCTCATAGAAATTGTTTCAAAAAAACTGGAAAATTCAAATCTTGAAAATTCAGAACTTCCAAAAATTGTGATTTTTAGAAAATGTGATATTAAAAATTCAAATTTTGAAAGAAAACAAAAATTTTCGAAAGCTGAGAAATCTAGCAATTCTGAAAACCCAAAACTTTTCCAATAATCAAAAAATTCTGATTTTCTCAAAATCCTAAATTTTAAGAAAATCTGAAATATCTGAAAATCCAAAAAATTTAAGAAACCTGAAATTTCTAGAAATCCCAAATTTAGAAAAATCTAGAATTTTTGAAAATCAATAAATTTGGAAATTTCTAAAAATTCAAACATTTTGGAAAATCTATAATTTCCTAAAATCTAGAAAATTTAGAAATCTGATGTTTCTGAAAATCCAAAATTTCTAAAAATCAACTTTCCAACATTTAAACAAGAGTTTCGAATTTTCTGAAATTCTGGATTTTCAGACTTTTTTTTTTG</canonical>
            <polymorphic>CTACAAAAATGAAGTTCAAGTTTTGCTTAGTATACTCTGAAGTTTTCAGCCAAAAAACTTACATGACTTGTGAGACGAGCAGCACAGCAAATAGTAGTAATATAATCCAGCGCCGCATCGGCGCCATTTGTGTTACCTGCAAAATTTGAAAGGTTTGGCGGAAATTCAAATTTCTATTCAGATTTTAAAGTTTAGATAATTGAGATGAGTAAACAGGAAAAATTGAGCCCAAATTCAGAGAATTAAAAATTTCAAAAAAGAGCCAAAAAACTTTTTTTTGGATTTCCTGAAAAAGGAAAAAAATAGGGAGAACTTGAAAAGAAAATTATAGGTTTCGGGGACATTTTTAGGTAAAAAAGTGGAGTTTTTTTCTATTTTTAGAATCTTTTTTTTTGGGATTTTTTTTTCTGGAAAATTGGAAAAAATGTGTGTGGGAAGAAAAAAGGATAATCAATGAGGAAATGGATCAAATTAGGTCAGAAAAAGAGGAAAATATGAGKCTTTGGTCTGAAATTCTCATAGAAATTGTTTCAAAAAAACTGGAAAATTCAAATCTTGAAAATTCAGAACTTCCAAAAATTGTGATTTTTAGAAAATGTGATATTAAAAATTCAAATTTTGAAAGAAAACAAAAATTTTCGAAAGCTGAGAAATCTAGCAATTCTGAAAACCCAAAACTTTTCCAATAATCAAAAAATTCTGATTTTCTCAAAATCCTAAATTTTAAGAAAATCTGAAATATCTGAAAATCCAAAAAATTTAAGAAACCTGAAATTTCTAGAAATCCCAAATTTAGAAAAATCTAGAATTTTTGAAAATCAATAAATTTGGAAATTTCTAAAAATTCAAACATTTTGGAAAATCTATAATTTCCTAAAATCTAGAAAATTTAGAAATCTGATGTTTCTGAAAATCCAAAATTTCTAAAAATCAACTTTCCAACATTTAAACAAGAGTTTCGAATTTTCTGAAATTCTGGATTTTCAGACTTTTTTTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>503 381 116</canonical_bands>
                <polymorphic_bands>619 381</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGGATAATCAATGAGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGTTTTGGGTTTTCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AAAAGGATAATCAATGAGGAAATGGATCAAATTAGGTCAGAAAAAGAGGAAAATATGAGTCTTTGGTCTGAAATTCTCATAGAAATTGTTTCAAAAAAACTGGAAAATTCAAATCTTGAAAATTCAGAACTTCCAAAAATTGTGATTTTTAGAAAATGTGATATTAAAAATTCAAATTTTGAAAGAAAACAAAAATTTTCGAAAGCTGAGAAATCTAGCAATTCTGAAAACCCAAAACTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGGATAATCAATGAGGAAATGGATCAAATTAGGTCAGAAAAAGAGGAAAATATGAGKCTTTGGTCTGAAATTCTCATAGAAATTGTTTCAAAAAAACTGGAAAATTCAAATCTTGAAAATTCAGAACTTCCAAAAATTGTGATTTTTAGAAAATGTGATATTAAAAATTCAAATTTTGAAAGAAAACAAAAATTTTCGAAAGCTGAGAAATCTAGCAATTCTGAAAACCCAAAACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2738</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>239733</contig_pos>
        <strand></strand>
        <context>TCAGAAAAAG[A/G]GGAAAATATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAAAAAGGATAATCAATGAGGAAATGGATCAAATTAGGTCAGAAAAAG</left_flank>
        <right_flank>GGAAAATATGAGTCTTTGGTCTGAAATTCTCATAGAAATTGTTTCAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAGTTGTCAACTACAAAAATGAAGTTCAAGTTTTGCTTAGTATACTCTGAAGTTTTCAGCCAAAAAACTTACATGACTTGTGAGACGAGCAGCACAGCAAATAGTAGTAATATAATCCAGCGCCGCATCGGCGCCATTTGTGTTACCTGCAAAATTTGAAAGGTTTGGCGGAAATTCAAATTTCTATTCAGATTTTAAAGTTTAGATAATTGAGATGAGTAAACAGGAAAAATTGAGCCCAAATTCAGAGAATTAAAAATTTCAAAAAAGAGCCAAAAAACTTTTTTTTGGATTTCCTGAAAAAGGAAAAAAATAGGGAGAACTTGAAAAGAAAATTATAGGTTTCGGGGACATTTTTAGGTAAAAAAGTGGAGTTTTTTTCTATTTTTAGAATCTTTTTTTTTGGGATTTTTTTTTCTGGAAAATTGGAAAAAATGTGTGTGGGAAGAAAAAAGGATAATCAATGAGGAAATGGATCAAATTAGGTCAGAAAAAGAGGAAAATATGAGTCTTTGGTCTGAAATTCTCATAGAAATTGTTTCAAAAAAACTGGAAAATTCAAATCTTGAAAATTCAGAACTTCCAAAAATTGTGATTTTTAGAAAATGTGATATTAAAAATTCAAATTTTGAAAGAAAACAAAAATTTTCGAAAGCTGAGAAATCTAGCAATTCTGAAAACCCAAAACTTTTCCAATAATCAAAAAATTCTGATTTTCTCAAAATCCTAAATTTTAAGAAAATCTGAAATATCTGAAAATCCAAAAAATTTAAGAAACCTGAAATTTCTAGAAATCCCAAATTTAGAAAAATCTAGAATTTTTGAAAATCAATAAATTTGGAAATTTCTAAAAATTCAAACATTTTGGAAAATCTATAATTTCCTAAAATCTAGAAAATTTAGAAATCTGATGTTTCTGAAAATCCAAAATTTCTAAAAATCAACTTTCCAACATTTAAACAAGAGTTTCGAATTTTCTGAAATTCTGGATTTTCAG</canonical>
            <polymorphic>AAAAAGTTGTCAACTACAAAAATGAAGTTCAAGTTTTGCTTAGTATACTCTGAAGTTTTCAGCCAAAAAACTTACATGACTTGTGAGACGAGCAGCACAGCAAATAGTAGTAATATAATCCAGCGCCGCATCGGCGCCATTTGTGTTACCTGCAAAATTTGAAAGGTTTGGCGGAAATTCAAATTTCTATTCAGATTTTAAAGTTTAGATAATTGAGATGAGTAAACAGGAAAAATTGAGCCCAAATTCAGAGAATTAAAAATTTCAAAAAAGAGCCAAAAAACTTTTTTTTGGATTTCCTGAAAAAGGAAAAAAATAGGGAGAACTTGAAAAGAAAATTATAGGTTTCGGGGACATTTTTAGGTAAAAAAGTGGAGTTTTTTTCTATTTTTAGAATCTTTTTTTTTGGGATTTTTTTTTCTGGAAAATTGGAAAAAATGTGTGTGGGAAGAAAAAAGGATAATCAATGAGGAAATGGATCAAATTAGGTCAGAAAAAGRGGAAAATATGAGTCTTTGGTCTGAAATTCTCATAGAAATTGTTTCAAAAAAACTGGAAAATTCAAATCTTGAAAATTCAGAACTTCCAAAAATTGTGATTTTTAGAAAATGTGATATTAAAAATTCAAATTTTGAAAGAAAACAAAAATTTTCGAAAGCTGAGAAATCTAGCAATTCTGAAAACCCAAAACTTTTCCAATAATCAAAAAATTCTGATTTTCTCAAAATCCTAAATTTTAAGAAAATCTGAAATATCTGAAAATCCAAAAAATTTAAGAAACCTGAAATTTCTAGAAATCCCAAATTTAGAAAAATCTAGAATTTTTGAAAATCAATAAATTTGGAAATTTCTAAAAATTCAAACATTTTGGAAAATCTATAATTTCCTAAAATCTAGAAAATTTAGAAATCTGATGTTTCTGAAAATCCAAAATTTCTAAAAATCAACTTTCCAACATTTAAACAAGAGTTTCGAATTTTCTGAAATTCTGGATTTTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTGTGTGGGAAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GGGTTTTCAGAATTGCTAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATGTGTGTGGGAAGAAAAAAGGATAATCAATGAGGAAATGGATCAAATTAGGTCAGAAAAAGAGGAAAATATGAGTCTTTGGTCTGAAATTCTCATAGAAATTGTTTCAAAAAAACTGGAAAATTCAAATCTTGAAAATTCAGAACTTCCAAAAATTGTGATTTTTAGAAAATGTGATATTAAAAATTCAAATTTTGAAAGAAAACAAAAATTTTCGAAAGCTGAGAAATCTAGCAATTCTGAAAACCC</canonical_amplicon>
		<polymorphic_amplicon>AATGTGTGTGGGAAGAAAAAAGGATAATCAATGAGGAAATGGATCAAATTAGGTCAGAAAAAGRGGAAAATATGAGTCTTTGGTCTGAAATTCTCATAGAAATTGTTTCAAAAAAACTGGAAAATTCAAATCTTGAAAATTCAGAACTTCCAAAAATTGTGATTTTTAGAAAATGTGATATTAAAAATTCAAATTTTGAAAGAAAACAAAAATTTTCGAAAGCTGAGAAATCTAGCAATTCTGAAAACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2740</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>239551</contig_pos>
        <strand></strand>
        <context>GGAAAAAAAT[A/G]GGGAGAACTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAGAGCCAAAAAACTTTTTTTTGGATTTCCTGAAAAAGGAAAAAAAT</left_flank>
        <right_flank>GGGAGAACTTGAAAAGAAAATTATAGGTTTCGGGGACATTTTTAGGTAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGTTAACTACAAAAATGTAGAAATTAAAATTTTACATACTTTTTTAATTAACAAAATTGTTCTAGCTGCCGTAGTTTTTGAGAAGTGTGCCTTTGAAGTTTGCGCCCCCCCCCCCCCTCTTTGCCTTCACCGAGGGAGTGCATTTTAAAAGCGCCTATCTCCAAAACTACCGTAGTTGGAAAAAAGTTGTCAACTACAAAAATGAAGTTCAAGTTTTGCTTAGTATACTCTGAAGTTTTCAGCCAAAAAACTTACATGACTTGTGAGACGAGCAGCACAGCAAATAGTAGTAATATAATCCAGCGCCGCATCGGCGCCATTTGTGTTACCTGCAAAATTTGAAAGGTTTGGCGGAAATTCAAATTTCTATTCAGATTTTAAAGTTTAGATAATTGAGATGAGTAAACAGGAAAAATTGAGCCCAAATTCAGAGAATTAAAAATTTCAAAAAAGAGCCAAAAAACTTTTTTTTGGATTTCCTGAAAAAGGAAAAAAATAGGGAGAACTTGAAAAGAAAATTATAGGTTTCGGGGACATTTTTAGGTAAAAAAGTGGAGTTTTTTTCTATTTTTAGAATCTTTTTTTTTGGGATTTTTTTTTCTGGAAAATTGGAAAAAATGTGTGTGGGAAGAAAAAAGGATAATCAATGAGGAAATGGATCAAATTAGGTCAGAAAAAGAGGAAAATATGAGTCTTTGGTCTGAAATTCTCATAGAAATTGTTTCAAAAAAACTGGAAAATTCAAATCTTGAAAATTCAGAACTTCCAAAAATTGTGATTTTTAGAAAATGTGATATTAAAAATTCAAATTTTGAAAGAAAACAAAAATTTTCGAAAGCTGAGAAATCTAGCAATTCTGAAAACCCAAAACTTTTCCAATAATCAAAAAATTCTGATTTTCTCAAAATCCTAAATTTTAAGAAAATCTGAAATATCTGAAAATCCAAAAAATTTAAGAAACCTGAAATTTCTAGAAATCCCAAATTTAGAAAAATCTA</canonical>
            <polymorphic>GATGTTAACTACAAAAATGTAGAAATTAAAATTTTACATACTTTTTTAATTAACAAAATTGTTCTAGCTGCCGTAGTTTTTGAGAAGTGTGCCTTTGAAGTTTGCGCCCCCCCCCCCCCTCTTTGCCTTCACCGAGGGAGTGCATTTTAAAAGCGCCTATCTCCAAAACTACCGTAGTTGGAAAAAAGTTGTCAACTACAAAAATGAAGTTCAAGTTTTGCTTAGTATACTCTGAAGTTTTCAGCCAAAAAACTTACATGACTTGTGAGACGAGCAGCACAGCAAATAGTAGTAATATAATCCAGCGCCGCATCGGCGCCATTTGTGTTACCTGCAAAATTTGAAAGGTTTGGCGGAAATTCAAATTTCTATTCAGATTTTAAAGTTTAGATAATTGAGATGAGTAAACAGGAAAAATTGAGCCCAAATTCAGAGAATTAAAAATTTCAAAAAAGAGCCAAAAAACTTTTTTTTGGATTTCCTGAAAAAGGAAAAAAATRGGGAGAACTTGAAAAGAAAATTATAGGTTTCGGGGACATTTTTAGGTAAAAAAGTGGAGTTTTTTTCTATTTTTAGAATCTTTTTTTTTGGGATTTTTTTTTCTGGAAAATTGGAAAAAATGTGTGTGGGAAGAAAAAAGGATAATCAATGAGGAAATGGATCAAATTAGGTCAGAAAAAGAGGAAAATATGAGTCTTTGGTCTGAAATTCTCATAGAAATTGTTTCAAAAAAACTGGAAAATTCAAATCTTGAAAATTCAGAACTTCCAAAAATTGTGATTTTTAGAAAATGTGATATTAAAAATTCAAATTTTGAAAGAAAACAAAAATTTTCGAAAGCTGAGAAATCTAGCAATTCTGAAAACCCAAAACTTTTCCAATAATCAAAAAATTCTGATTTTCTCAAAATCCTAAATTTTAAGAAAATCTGAAATATCTGAAAATCCAAAAAATTTAAGAAACCTGAAATTTCTAGAAATCCCAAATTTAGAAAAATCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCAAATTCAGAGAATTAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTAATTTGATCCATTTCCTCAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCCAAATTCAGAGAATTAAAAATTTCAAAAAAGAGCCAAAAAACTTTTTTTTGGATTTCCTGAAAAAGGAAAAAAATAGGGAGAACTTGAAAAGAAAATTATAGGTTTCGGGGACATTTTTAGGTAAAAAAGTGGAGTTTTTTTCTATTTTTAGAATCTTTTTTTTTGGGATTTTTTTTTCTGGAAAATTGGAAAAAATGTGTGTGGGAAGAAAAAAGGATAATCAATGAGGAAATGGATCAAATTAG</canonical_amplicon>
		<polymorphic_amplicon>CCCAAATTCAGAGAATTAAAAATTTCAAAAAAGAGCCAAAAAACTTTTTTTTGGATTTCCTGAAAAAGGAAAAAAATRGGGAGAACTTGAAAAGAAAATTATAGGTTTCGGGGACATTTTTAGGTAAAAAAGTGGAGTTTTTTTCTATTTTTAGAATCTTTTTTTTTGGGATTTTTTTTTCTGGAAAATTGGAAAAAATGTGTGTGGGAAGAAAAAAGGATAATCAATGAGGAAATGGATCAAATTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2741</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>328233</contig_pos>
        <strand>+</strand>
        <context>TAGGGCTAAT[C/T]GATATTAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGATAGAGATGTAAGTTTTAGGAGCTAATCAGGGCTAATTAGGGCTAAT</left_flank>
        <right_flank>GATATTAAAAATACGTTTTTAGATCCGCCACGAAGCCGAATCATCAATGT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAACCTCTTTTTTGGATCTTTTTAGGACATTTATGACCATTTTCAGACCATTTTCCGGCTTTTTAGATCAATTTTACATCTAGAAAATTTTCAGACAACTAATGATGCTTCGAATCATCCAACAAGGCAAATATGAGTTTCGCAACGAGCAATGGAACAATATCACCCCGGATGCGAAGAATCTGATCTCTCAACTCCTTCAAGTAGATGTCACGAAGAGAATCACCTCTAAAGAATGTCTCACCCATGAGTGGATGGTCCCGATTGCCCAGCAGCCAGCACCAGTACCAACGGTTCAAGTGGAATTGGTCAAAGATCAGAGATCCGAGAAAGCTCGGAAGAGGTTCAAAACTTCGATCATCTGGGTGCGATTCTTCCAGCGGCTGGCCAAGTATAAGTACCTGAAGACGGTTATTGATCGAGATGTACTCAGAAAGAGACCATTCAGAGATAGAGATGTAAGTTTTAGGAGCTAATCAGGGCTAATTAGGGCTAATCGATATTAAAAATACGTTTTTAGATCCGCCACGAAGCCGAATCATCAATGTTCAGTGTTTACGGTCACTGGGTGAATCGTGGCTTCTACTACTCCCGAGACATGCTTTTCGCCAATAAGCCACGTCCCAAATTCGCCAAAAAGACGCAAGAGTCGGAGCAACTCAAGGTTCCAGGAGCACCATCTAAATAATTAGCTTTTTTTTTGCTTATTTTTAGCACATTTTTGTCATTTCCAGTGTTTTCTTGCCCCCGATTTTCTCTCTAATCATGTTTTTCTTTGTACTAGCTGTAAAAATCCCTTTTTCCTAGCGCGATTTTTTGTCAAAATTCTCATCTTGTTTTCTAGCCCCGCCCCTTTTTCCCGCCCCCGCTGTACAGATCTCTCCCTGTCTGTCTTTAAAAAAGAAGCATTTTCTGATTTATATATATTAAGCACCGTTTTCCCCTCTTTCCTCTGTATTCCAGATCATTGTATAAATTTTTGAAGGAATCCCTTTTTT</canonical>
            <polymorphic>CAGAACCTCTTTTTTGGATCTTTTTAGGACATTTATGACCATTTTCAGACCATTTTCCGGCTTTTTAGATCAATTTTACATCTAGAAAATTTTCAGACAACTAATGATGCTTCGAATCATCCAACAAGGCAAATATGAGTTTCGCAACGAGCAATGGAACAATATCACCCCGGATGCGAAGAATCTGATCTCTCAACTCCTTCAAGTAGATGTCACGAAGAGAATCACCTCTAAAGAATGTCTCACCCATGAGTGGATGGTCCCGATTGCCCAGCAGCCAGCACCAGTACCAACGGTTCAAGTGGAATTGGTCAAAGATCAGAGATCCGAGAAAGCTCGGAAGAGGTTCAAAACTTCGATCATCTGGGTGCGATTCTTCCAGCGGCTGGCCAAGTATAAGTACCTGAAGACGGTTATTGATCGAGATGTACTCAGAAAGAGACCATTCAGAGATAGAGATGTAAGTTTTAGGAGCTAATCAGGGCTAATTAGGGCTAATYGATATTAAAAATACGTTTTTAGATCCGCCACGAAGCCGAATCATCAATGTTCAGTGTTTACGGTCACTGGGTGAATCGTGGCTTCTACTACTCCCGAGACATGCTTTTCGCCAATAAGCCACGTCCCAAATTCGCCAAAAAGACGCAAGAGTCGGAGCAACTCAAGGTTCCAGGAGCACCATCTAAATAATTAGCTTTTTTTTTGCTTATTTTTAGCACATTTTTGTCATTTCCAGTGTTTTCTTGCCCCCGATTTTCTCTCTAATCATGTTTTTCTTTGTACTAGCTGTAAAAATCCCTTTTTCCTAGCGCGATTTTTTGTCAAAATTCTCATCTTGTTTTCTAGCCCCGCCCCTTTTTCCCGCCCCCGCTGTACAGATCTCTCCCTGTCTGTCTTTAAAAAAGAAGCATTTTCTGATTTATATATATTAAGCACCGTTTTCCCCTCTTTCCTCTGTATTCCAGATCATTGTATAAATTTTTGAAGGAATCCCTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 244 113 78 65</canonical_bands>
                <polymorphic_bands>578 244 113 65</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTCAAAACTTCGATCATCT</pcr_primer_p1>
		<pcr_primer_p2>AGTAGTAGAAGCCACGATTCAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGTTCAAAACTTCGATCATCTGGGTGCGATTCTTCCAGCGGCTGGCCAAGTATAAGTACCTGAAGACGGTTATTGATCGAGATGTACTCAGAAAGAGACCATTCAGAGATAGAGATGTAAGTTTTAGGAGCTAATCAGGGCTAATTAGGGCTAATCGATATTAAAAATACGTTTTTAGATCCGCCACGAAGCCGAATCATCAATGTTCAGTGTTTACGGTCACTGGGTGAATCGTGGCTTCTACTACT</canonical_amplicon>
		<polymorphic_amplicon>GGTTCAAAACTTCGATCATCTGGGTGCGATTCTTCCAGCGGCTGGCCAAGTATAAGTACCTGAAGACGGTTATTGATCGAGATGTACTCAGAAAGAGACCATTCAGAGATAGAGATGTAAGTTTTAGGAGCTAATCAGGGCTAATTAGGGCTAATYGATATTAAAAATACGTTTTTAGATCCGCCACGAAGCCGAATCATCAATGTTCAGTGTTTACGGTCACTGGGTGAATCGTGGCTTCTACTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2742</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>328678</contig_pos>
        <strand>+</strand>
        <context>ACCGTTTTCC[A/C]CTCTTTCCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTTAAAAAAGAAGCATTTTCTGATTTATATATATTAAGCACCGTTTTCC</left_flank>
        <right_flank>CTCTTTCCTCTGTATTCCAGATCATTGTATAAATTTTTGAAGGAATCCCT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAGAGATAGAGATGTAAGTTTTAGGAGCTAATCAGGGCTAATTAGGGCTAATCGATATTAAAAATACGTTTTTAGATCCGCCACGAAGCCGAATCATCAATGTTCAGTGTTTACGGTCACTGGGTGAATCGTGGCTTCTACTACTCCCGAGACATGCTTTTCGCCAATAAGCCACGTCCCAAATTCGCCAAAAAGACGCAAGAGTCGGAGCAACTCAAGGTTCCAGGAGCACCATCTAAATAATTAGCTTTTTTTTTGCTTATTTTTAGCACATTTTTGTCATTTCCAGTGTTTTCTTGCCCCCGATTTTCTCTCTAATCATGTTTTTCTTTGTACTAGCTGTAAAAATCCCTTTTTCCTAGCGCGATTTTTTGTCAAAATTCTCATCTTGTTTTCTAGCCCCGCCCCTTTTTCCCGCCCCCGCTGTACAGATCTCTCCCTGTCTGTCTTTAAAAAAGAAGCATTTTCTGATTTATATATATTAAGCACCGTTTTCCCCTCTTTCCTCTGTATTCCAGATCATTGTATAAATTTTTGAAGGAATCCCTTTTTTTGCAAGTTTTAAAGCATTTCTCCGACGGTTTTATAAGAATTAACCGATTTCTACTTTTTTCAAAATTGAAACTTACTGGAAAAGTGGTCTGATAAATATTTAGCAGGCCAACGAGTCGCAGAGAAAGCTTTTGCAAAAAATTCTGAAAAATGGTCCAAATGTCATGTTTCTACGATGATTTTGAGAAAAGTTATGGAGGAAACGAAAATTTGGGTCTGCTAAATAGCAGGCCAAGGAGAGACGCAGAGAAACGAGAACATTGGTCTGCTAATGTTCGAATAGCAGGCTAATTCTCCTTTTTTCTCTGCGTCTCGTGGGTCTGCTAATGTTTTTGGCGTGCGAAATCATTAGCAGGCCCACGGGGCATGGGTCTGCTAATATTTTGAAAAGACGCAGAGAAACGAGAGCATTGGTCTGCTGAATATTTAGAAACATTAGCAGACCA</canonical>
            <polymorphic>TTCAGAGATAGAGATGTAAGTTTTAGGAGCTAATCAGGGCTAATTAGGGCTAATCGATATTAAAAATACGTTTTTAGATCCGCCACGAAGCCGAATCATCAATGTTCAGTGTTTACGGTCACTGGGTGAATCGTGGCTTCTACTACTCCCGAGACATGCTTTTCGCCAATAAGCCACGTCCCAAATTCGCCAAAAAGACGCAAGAGTCGGAGCAACTCAAGGTTCCAGGAGCACCATCTAAATAATTAGCTTTTTTTTTGCTTATTTTTAGCACATTTTTGTCATTTCCAGTGTTTTCTTGCCCCCGATTTTCTCTCTAATCATGTTTTTCTTTGTACTAGCTGTAAAAATCCCTTTTTCCTAGCGCGATTTTTTGTCAAAATTCTCATCTTGTTTTCTAGCCCCGCCCCTTTTTCCCGCCCCCGCTGTACAGATCTCTCCCTGTCTGTCTTTAAAAAAGAAGCATTTTCTGATTTATATATATTAAGCACCGTTTTCCMCTCTTTCCTCTGTATTCCAGATCATTGTATAAATTTTTGAAGGAATCCCTTTTTTTGCAAGTTTTAAAGCATTTCTCCGACGGTTTTATAAGAATTAACCGATTTCTACTTTTTTCAAAATTGAAACTTACTGGAAAAGTGGTCTGATAAATATTTAGCAGGCCAACGAGTCGCAGAGAAAGCTTTTGCAAAAAATTCTGAAAAATGGTCCAAATGTCATGTTTCTACGATGATTTTGAGAAAAGTTATGGAGGAAACGAAAATTTGGGTCTGCTAAATAGCAGGCCAAGGAGAGACGCAGAGAAACGAGAACATTGGTCTGCTAATGTTCGAATAGCAGGCTAATTCTCCTTTTTTCTCTGCGTCTCGTGGGTCTGCTAATGTTTTTGGCGTGCGAAATCATTAGCAGGCCCACGGGGCATGGGTCTGCTAATATTTTGAAAAGACGCAGAGAAACGAGAGCATTGGTCTGCTGAATATTTAGAAACATTAGCAGACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAAAAATCCCTTTTTCCTAGC</pcr_primer_p1>
		<pcr_primer_p2>TTATAAAACCGTCGGAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTAAAAATCCCTTTTTCCTAGCGCGATTTTTTGTCAAAATTCTCATCTTGTTTTCTAGCCCCGCCCCTTTTTCCCGCCCCCGCTGTACAGATCTCTCCCTGTCTGTCTTTAAAAAAGAAGCATTTTCTGATTTATATATATTAAGCACCGTTTTCCCCTCTTTCCTCTGTATTCCAGATCATTGTATAAATTTTTGAAGGAATCCCTTTTTTTGCAAGTTTTAAAGCATTTCTCCGACGGTTTTATAA</canonical_amplicon>
		<polymorphic_amplicon>GTAAAAATCCCTTTTTCCTAGCGCGATTTTTTGTCAAAATTCTCATCTTGTTTTCTAGCCCCGCCCCTTTTTCCCGCCCCCGCTGTACAGATCTCTCCCTGTCTGTCTTTAAAAAAGAAGCATTTTCTGATTTATATATATTAAGCACCGTTTTCCMCTCTTTCCTCTGTATTCCAGATCATTGTATAAATTTTTGAAGGAATCCCTTTTTTTGCAAGTTTTAAAGCATTTCTCCGACGGTTTTATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2743</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>328727</contig_pos>
        <strand>+</strand>
        <context>GAAGGAATCC[C/T]TTTTTTTGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCTCTTTCCTCTGTATTCCAGATCATTGTATAAATTTTTGAAGGAATCC</left_flank>
        <right_flank>TTTTTTTGCAAGTTTTAAAGCATTTCTCCGACGGTTTTATAAGAATTAAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAATCGATATTAAAAATACGTTTTTAGATCCGCCACGAAGCCGAATCATCAATGTTCAGTGTTTACGGTCACTGGGTGAATCGTGGCTTCTACTACTCCCGAGACATGCTTTTCGCCAATAAGCCACGTCCCAAATTCGCCAAAAAGACGCAAGAGTCGGAGCAACTCAAGGTTCCAGGAGCACCATCTAAATAATTAGCTTTTTTTTTGCTTATTTTTAGCACATTTTTGTCATTTCCAGTGTTTTCTTGCCCCCGATTTTCTCTCTAATCATGTTTTTCTTTGTACTAGCTGTAAAAATCCCTTTTTCCTAGCGCGATTTTTTGTCAAAATTCTCATCTTGTTTTCTAGCCCCGCCCCTTTTTCCCGCCCCCGCTGTACAGATCTCTCCCTGTCTGTCTTTAAAAAAGAAGCATTTTCTGATTTATATATATTAAGCACCGTTTTCCCCTCTTTCCTCTGTATTCCAGATCATTGTATAAATTTTTGAAGGAATCCCTTTTTTTGCAAGTTTTAAAGCATTTCTCCGACGGTTTTATAAGAATTAACCGATTTCTACTTTTTTCAAAATTGAAACTTACTGGAAAAGTGGTCTGATAAATATTTAGCAGGCCAACGAGTCGCAGAGAAAGCTTTTGCAAAAAATTCTGAAAAATGGTCCAAATGTCATGTTTCTACGATGATTTTGAGAAAAGTTATGGAGGAAACGAAAATTTGGGTCTGCTAAATAGCAGGCCAAGGAGAGACGCAGAGAAACGAGAACATTGGTCTGCTAATGTTCGAATAGCAGGCTAATTCTCCTTTTTTCTCTGCGTCTCGTGGGTCTGCTAATGTTTTTGGCGTGCGAAATCATTAGCAGGCCCACGGGGCATGGGTCTGCTAATATTTTGAAAAGACGCAGAGAAACGAGAGCATTGGTCTGCTGAATATTTAGAAACATTAGCAGACCACTTTTTCTCTGCGTCTCGTGTTTTTGGCACGCGAAACATTAGCAGACCC</canonical>
            <polymorphic>CTAATCGATATTAAAAATACGTTTTTAGATCCGCCACGAAGCCGAATCATCAATGTTCAGTGTTTACGGTCACTGGGTGAATCGTGGCTTCTACTACTCCCGAGACATGCTTTTCGCCAATAAGCCACGTCCCAAATTCGCCAAAAAGACGCAAGAGTCGGAGCAACTCAAGGTTCCAGGAGCACCATCTAAATAATTAGCTTTTTTTTTGCTTATTTTTAGCACATTTTTGTCATTTCCAGTGTTTTCTTGCCCCCGATTTTCTCTCTAATCATGTTTTTCTTTGTACTAGCTGTAAAAATCCCTTTTTCCTAGCGCGATTTTTTGTCAAAATTCTCATCTTGTTTTCTAGCCCCGCCCCTTTTTCCCGCCCCCGCTGTACAGATCTCTCCCTGTCTGTCTTTAAAAAAGAAGCATTTTCTGATTTATATATATTAAGCACCGTTTTCCCCTCTTTCCTCTGTATTCCAGATCATTGTATAAATTTTTGAAGGAATCCYTTTTTTTGCAAGTTTTAAAGCATTTCTCCGACGGTTTTATAAGAATTAACCGATTTCTACTTTTTTCAAAATTGAAACTTACTGGAAAAGTGGTCTGATAAATATTTAGCAGGCCAACGAGTCGCAGAGAAAGCTTTTGCAAAAAATTCTGAAAAATGGTCCAAATGTCATGTTTCTACGATGATTTTGAGAAAAGTTATGGAGGAAACGAAAATTTGGGTCTGCTAAATAGCAGGCCAAGGAGAGACGCAGAGAAACGAGAACATTGGTCTGCTAATGTTCGAATAGCAGGCTAATTCTCCTTTTTTCTCTGCGTCTCGTGGGTCTGCTAATGTTTTTGGCGTGCGAAATCATTAGCAGGCCCACGGGGCATGGGTCTGCTAATATTTTGAAAAGACGCAGAGAAACGAGAGCATTGGTCTGCTGAATATTTAGAAACATTAGCAGACCACTTTTTCTCTGCGTCTCGTGTTTTTGGCACGCGAAACATTAGCAGACCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTCTCATCTTGTTTTCTAGC</pcr_primer_p1>
		<pcr_primer_p2>ACTTTTCCAGTAAGTTTCAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>AAAATTCTCATCTTGTTTTCTAGCCCCGCCCCTTTTTCCCGCCCCCGCTGTACAGATCTCTCCCTGTCTGTCTTTAAAAAAGAAGCATTTTCTGATTTATATATATTAAGCACCGTTTTCCCCTCTTTCCTCTGTATTCCAGATCATTGTATAAATTTTTGAAGGAATCCCTTTTTTTGCAAGTTTTAAAGCATTTCTCCGACGGTTTTATAAGAATTAACCGATTTCTACTTTTTTCAAAATTGAAACTTACTGGAAAAGT</canonical_amplicon>
		<polymorphic_amplicon>AAAATTCTCATCTTGTTTTCTAGCCCCGCCCCTTTTTCCCGCCCCCGCTGTACAGATCTCTCCCTGTCTGTCTTTAAAAAAGAAGCATTTTCTGATTTATATATATTAAGCACCGTTTTCCCCTCTTTCCTCTGTATTCCAGATCATTGTATAAATTTTTGAAGGAATCCYTTTTTTTGCAAGTTTTAAAGCATTTCTCCGACGGTTTTATAAGAATTAACCGATTTCTACTTTTTTCAAAATTGAAACTTACTGGAAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2744</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>330335</contig_pos>
        <strand>+</strand>
        <context>ATATTTTGGA[C/T]CCAAAGATTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTATCAACAGGGCTCATATCGTTGTCTACTCTTATCACTATATTTTGGA</left_flank>
        <right_flank>CCAAAGATTGCTGAGCTGGTGTCAAAGGATTTTAGTAGGAAGTCAGTTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGGAAAAACGGTTTCCCTCCTCTCCCTGGTGCTCTCTTATATGATCTCCTACCCCGATCGGCTGGATAAACTGGTTTATTGTTCCAGAACGATTCCAGAAATTGAGAAATGCGTTGAGGAGATGAAAGTGCTATATGACTACTGGGAGAAGGAGACAGGGGTGCCGGTGGCGAAGATTACTGTAGCAATGAGTGCCAGAAAGAATTTGTGTATCAATGAGAAAGTGGCAGCTTTGAGATTTGGAAATACGGTAGACTCGGCATGCCAGAAGTTGACGTCTTCTTCGGTGCGAGCGAAACGACAAGAGAATTCGGAAATTGAAGGATGCGATTTTTTCGAAAACTTCGAGGCAAACGGGTTCCCAATGCAGAATGGGGTCTGGAACCTGGAGGATCTACGTCAGCTGGGCAGAGAACGCAAGATTTGTCCTTATTTTACTGCTAGAAATGCTATCAACAGGGCTCATATCGTTGTCTACTCTTATCACTATATTTTGGATCCAAAGATTGCTGAGCTGGTGTCAAAGGATTTTAGTAGGAAGTCAGTTGTGGTTTTTGACGAGGCACATAATATCGATAACGTTTGTATTGAGTCAATGTCAGTGGCGATTTCACAAAAGAACGCGGATCGGGCATTGCAGGTATATTAATAAAAACTAGATTAAATTGCGCTGAAGGCGCACCAGCCATTACTAAAAGCTTTGAAATATCAGATTCTTCTGGTTTTTAGGAGCTCCAAAATCTGGAACAAGTAGTGGGAAGGATTAAAAGTGCGAATTCGGAAAAACTACAAAACGAATACGACAAATTGGTTGAAGGGCTGAAACGAGCTGAAAGAGAGAGAGCAAACGACGAAAGGCTGGCGAATCCATGTATTCCAGATGATATTCTGAAGGAGGCGGTGCCTGGAAACATTCGGCAGGCGAATCACTTTCTTTTGTTCTTGAAGCGATTCGTGGAGTATGTTAGGCATCGATTGAGAACGCATCAGGTTAGGATT</canonical>
            <polymorphic>CTGGAAAAACGGTTTCCCTCCTCTCCCTGGTGCTCTCTTATATGATCTCCTACCCCGATCGGCTGGATAAACTGGTTTATTGTTCCAGAACGATTCCAGAAATTGAGAAATGCGTTGAGGAGATGAAAGTGCTATATGACTACTGGGAGAAGGAGACAGGGGTGCCGGTGGCGAAGATTACTGTAGCAATGAGTGCCAGAAAGAATTTGTGTATCAATGAGAAAGTGGCAGCTTTGAGATTTGGAAATACGGTAGACTCGGCATGCCAGAAGTTGACGTCTTCTTCGGTGCGAGCGAAACGACAAGAGAATTCGGAAATTGAAGGATGCGATTTTTTCGAAAACTTCGAGGCAAACGGGTTCCCAATGCAGAATGGGGTCTGGAACCTGGAGGATCTACGTCAGCTGGGCAGAGAACGCAAGATTTGTCCTTATTTTACTGCTAGAAATGCTATCAACAGGGCTCATATCGTTGTCTACTCTTATCACTATATTTTGGAYCCAAAGATTGCTGAGCTGGTGTCAAAGGATTTTAGTAGGAAGTCAGTTGTGGTTTTTGACGAGGCACATAATATCGATAACGTTTGTATTGAGTCAATGTCAGTGGCGATTTCACAAAAGAACGCGGATCGGGCATTGCAGGTATATTAATAAAAACTAGATTAAATTGCGCTGAAGGCGCACCAGCCATTACTAAAAGCTTTGAAATATCAGATTCTTCTGGTTTTTAGGAGCTCCAAAATCTGGAACAAGTAGTGGGAAGGATTAAAAGTGCGAATTCGGAAAAACTACAAAACGAATACGACAAATTGGTTGAAGGGCTGAAACGAGCTGAAAGAGAGAGAGCAAACGACGAAAGGCTGGCGAATCCATGTATTCCAGATGATATTCTGAAGGAGGCGGTGCCTGGAAACATTCGGCAGGCGAATCACTTTCTTTTGTTCTTGAAGCGATTCGTGGAGTATGTTAGGCATCGATTGAGAACGCATCAGGTTAGGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGATCC</site>
                <isoschizomers>
                    <enzyme>BamHI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>374 336 129 105 43 13</canonical_bands>
                <polymorphic_bands>374 336 234 43 13</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>503 392 105</canonical_bands>
                <polymorphic_bands>608 392</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAGAATTCGGAAATTGAAG</pcr_primer_p1>
		<pcr_primer_p2>AACCACAACTGACTTCCTACTAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAGAGAATTCGGAAATTGAAGGATGCGATTTTTTCGAAAACTTCGAGGCAAACGGGTTCCCAATGCAGAATGGGGTCTGGAACCTGGAGGATCTACGTCAGCTGGGCAGAGAACGCAAGATTTGTCCTTATTTTACTGCTAGAAATGCTATCAACAGGGCTCATATCGTTGTCTACTCTTATCACTATATTTTGGATCCAAAGATTGCTGAGCTGGTGTCAAAGGATTTTAGTAGGAAGTCAGTTGTGGTT</canonical_amplicon>
		<polymorphic_amplicon>AAGAGAATTCGGAAATTGAAGGATGCGATTTTTTCGAAAACTTCGAGGCAAACGGGTTCCCAATGCAGAATGGGGTCTGGAACCTGGAGGATCTACGTCAGCTGGGCAGAGAACGCAAGATTTGTCCTTATTTTACTGCTAGAAATGCTATCAACAGGGCTCATATCGTTGTCTACTCTTATCACTATATTTTGGAYCCAAAGATTGCTGAGCTGGTGTCAAAGGATTTTAGTAGGAAGTCAGTTGTGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2745</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>330005</contig_pos>
        <strand>+</strand>
        <context>GGGTGCCGGT[C/G]GCGAAGATTA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAGATGAAAGTGCTATATGACTACTGGGAGAAGGAGACAGGGGTGCCGGT</left_flank>
        <right_flank>GCGAAGATTACTGTAGCAATGAGTGCCAGAAAGAATTTGTGTATCAATGA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGCAGTGGCCTGCTAAATAATTTGCAGGCCAACGAGAGACGCAGAGAAGAAGAAAGTGGTTTGCTTATTATTCAGTAGCTGTAAAATCCCTCAAAATTGTTTAAAAACAATGCAATTTTCAGAGTTAAACCATCCCAAAAAGCCATGCAGTTAGATATAGATGGCCTAAAAGTGCTGTTCCCGTACGATTATGTCTATCCGGAGCAGGTTTTGTATATGAAAGAAGTCAAAAAGGCCCTAGATGCCAATGTAAGAATCTTTTAAAGCATCTTTAGAGGCTAATATTTGAGGCTTTCAGGGTCACGGCTTGCTAGAAATGCCGTCAGGAACTGGAAAAACGGTTTCCCTCCTCTCCCTGGTGCTCTCTTATATGATCTCCTACCCCGATCGGCTGGATAAACTGGTTTATTGTTCCAGAACGATTCCAGAAATTGAGAAATGCGTTGAGGAGATGAAAGTGCTATATGACTACTGGGAGAAGGAGACAGGGGTGCCGGTGGCGAAGATTACTGTAGCAATGAGTGCCAGAAAGAATTTGTGTATCAATGAGAAAGTGGCAGCTTTGAGATTTGGAAATACGGTAGACTCGGCATGCCAGAAGTTGACGTCTTCTTCGGTGCGAGCGAAACGACAAGAGAATTCGGAAATTGAAGGATGCGATTTTTTCGAAAACTTCGAGGCAAACGGGTTCCCAATGCAGAATGGGGTCTGGAACCTGGAGGATCTACGTCAGCTGGGCAGAGAACGCAAGATTTGTCCTTATTTTACTGCTAGAAATGCTATCAACAGGGCTCATATCGTTGTCTACTCTTATCACTATATTTTGGATCCAAAGATTGCTGAGCTGGTGTCAAAGGATTTTAGTAGGAAGTCAGTTGTGGTTTTTGACGAGGCACATAATATCGATAACGTTTGTATTGAGTCAATGTCAGTGGCGATTTCACAAAAGAACGCGGATCGGGCATTGCAGGTATATTAATAAAAACTAGATTAAATTGC</canonical>
            <polymorphic>GCGCAGTGGCCTGCTAAATAATTTGCAGGCCAACGAGAGACGCAGAGAAGAAGAAAGTGGTTTGCTTATTATTCAGTAGCTGTAAAATCCCTCAAAATTGTTTAAAAACAATGCAATTTTCAGAGTTAAACCATCCCAAAAAGCCATGCAGTTAGATATAGATGGCCTAAAAGTGCTGTTCCCGTACGATTATGTCTATCCGGAGCAGGTTTTGTATATGAAAGAAGTCAAAAAGGCCCTAGATGCCAATGTAAGAATCTTTTAAAGCATCTTTAGAGGCTAATATTTGAGGCTTTCAGGGTCACGGCTTGCTAGAAATGCCGTCAGGAACTGGAAAAACGGTTTCCCTCCTCTCCCTGGTGCTCTCTTATATGATCTCCTACCCCGATCGGCTGGATAAACTGGTTTATTGTTCCAGAACGATTCCAGAAATTGAGAAATGCGTTGAGGAGATGAAAGTGCTATATGACTACTGGGAGAAGGAGACAGGGGTGCCGGTSGCGAAGATTACTGTAGCAATGAGTGCCAGAAAGAATTTGTGTATCAATGAGAAAGTGGCAGCTTTGAGATTTGGAAATACGGTAGACTCGGCATGCCAGAAGTTGACGTCTTCTTCGGTGCGAGCGAAACGACAAGAGAATTCGGAAATTGAAGGATGCGATTTTTTCGAAAACTTCGAGGCAAACGGGTTCCCAATGCAGAATGGGGTCTGGAACCTGGAGGATCTACGTCAGCTGGGCAGAGAACGCAAGATTTGTCCTTATTTTACTGCTAGAAATGCTATCAACAGGGCTCATATCGTTGTCTACTCTTATCACTATATTTTGGATCCAAAGATTGCTGAGCTGGTGTCAAAGGATTTTAGTAGGAAGTCAGTTGTGGTTTTTGACGAGGCACATAATATCGATAACGTTTGTATTGAGTCAATGTCAGTGGCGATTTCACAAAAGAACGCGGATCGGGCATTGCAGGTATATTAATAAAAACTAGATTAAATTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>197 129 116 99 63 58 56 51 39 34 33 30 25 16 16 15 9 8 6</canonical_bands>
                <polymorphic_bands>197 129 116 99 63 58 56 51 39 34 33 31 30 16 16 15 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGGTGCTCTCTTATATGATCTC</pcr_primer_p1>
		<pcr_primer_p2>GAGTCTACCGTATTTCCAAATCT</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>CTGGTGCTCTCTTATATGATCTCCTACCCCGATCGGCTGGATAAACTGGTTTATTGTTCCAGAACGATTCCAGAAATTGAGAAATGCGTTGAGGAGATGAAAGTGCTATATGACTACTGGGAGAAGGAGACAGGGGTGCCGGTGGCGAAGATTACTGTAGCAATGAGTGCCAGAAAGAATTTGTGTATCAATGAGAAAGTGGCAGCTTTGAGATTTGGAAATACGGTAGACTC</canonical_amplicon>
		<polymorphic_amplicon>CTGGTGCTCTCTTATATGATCTCCTACCCCGATCGGCTGGATAAACTGGTTTATTGTTCCAGAACGATTCCAGAAATTGAGAAATGCGTTGAGGAGATGAAAGTGCTATATGACTACTGGGAGAAGGAGACAGGGGTGCCGGTSGCGAAGATTACTGTAGCAATGAGTGCCAGAAAGAATTTGTGTATCAATGAGAAAGTGGCAGCTTTGAGATTTGGAAATACGGTAGACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2749</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>372577</contig_pos>
        <strand>+</strand>
        <context>CAATTTGTCT[A/T]TTTGGTGTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAACGCTGGAATCATTTTTGTATACTGTACTCTTCCCGCCAATTTGTCT</left_flank>
        <right_flank>TTTGGTGTCGTTGGAAATGCGTTGACCATTTTGGTGCTGGTTAATAATGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTTTTTCGTAAGATTGTATTTTTATAAAAAGTTTAGAAATCATCCGATTGCGATAAAAATTGATATCACGATTTGAAATGCCATAAAAAACACTAAGTTGGAACAAAATTCAAAAAATTTAAAAATTAAAAAAAATTTTTTCAATTTTTAGAAATTCCAGTTTTTTTTTCTTTTAATCTGTTTGTCCAGATATCCACTTCTACATCTTCTTTTTCTTCTTCTTCTTCTTCATTCTCTCCAGACCCATCATCTCCCCCATTTTTCCTCCCGTATGCAAGCACATAAAAATTTCTCGAAAAATCATTAAAAAACTAAAAACTTTCTTCCCCCATGTGTCCATCTGTAAATCCCGATTTCCAGATGTCCACTTGATCCCAGAAAGAGCACAAAAAGCCATGGACTCGAGTTCTCTATGCCTTCCGGAATCACAGCTTCGACTGTCTGGATCAACGCTGGAATCATTTTTGTATACTGTACTCTTCCCGCCAATTTGTCTTTTTGGTGTCGTTGGAAATGCGTTGACCATTTTGGTGCTGGTTAATAATGATTTTATGTCCAGGTGAGCAGTTTTGAAAGAAAAAAAAGTAAATCATTTGAAAAGGAATATGAAGAAAACGGAGAATTTGAATACCTATACTCTACCTATCAAATGATTTTTGACCATTTTCAAGAGCCTGTATCTCAGCTTTCAAGTTTCCGATTTCTTTGAAAATTTCAGAATATACAAAGCAAGAATAGAACTTTACTTTTTTAGTTGACATCTTTTTCTAGCTACCGTAGTTTTTGAGCTATGCGCCTTTAAAGTTGGCGCGCCTCCCCCACTGGTGGGCGGCGACCAGTGGGGGAGCAGGTCCACTTTAAAGGCGCATATCTCAAAAAGTGCACTAGCTAGACAAGTTGAGCAACCTATGAAAATGTGAGAAATTTGATTTTGAACATTTTAGTAGTTGACATCTTTTTTCTAGATACCGTAGTTTTTGAGATTTTTGCCTTTAAA</canonical>
            <polymorphic>GTTTTTTTTCGTAAGATTGTATTTTTATAAAAAGTTTAGAAATCATCCGATTGCGATAAAAATTGATATCACGATTTGAAATGCCATAAAAAACACTAAGTTGGAACAAAATTCAAAAAATTTAAAAATTAAAAAAAATTTTTTCAATTTTTAGAAATTCCAGTTTTTTTTTCTTTTAATCTGTTTGTCCAGATATCCACTTCTACATCTTCTTTTTCTTCTTCTTCTTCTTCATTCTCTCCAGACCCATCATCTCCCCCATTTTTCCTCCCGTATGCAAGCACATAAAAATTTCTCGAAAAATCATTAAAAAACTAAAAACTTTCTTCCCCCATGTGTCCATCTGTAAATCCCGATTTCCAGATGTCCACTTGATCCCAGAAAGAGCACAAAAAGCCATGGACTCGAGTTCTCTATGCCTTCCGGAATCACAGCTTCGACTGTCTGGATCAACGCTGGAATCATTTTTGTATACTGTACTCTTCCCGCCAATTTGTCTWTTTGGTGTCGTTGGAAATGCGTTGACCATTTTGGTGCTGGTTAATAATGATTTTATGTCCAGGTGAGCAGTTTTGAAAGAAAAAAAAGTAAATCATTTGAAAAGGAATATGAAGAAAACGGAGAATTTGAATACCTATACTCTACCTATCAAATGATTTTTGACCATTTTCAAGAGCCTGTATCTCAGCTTTCAAGTTTCCGATTTCTTTGAAAATTTCAGAATATACAAAGCAAGAATAGAACTTTACTTTTTTAGTTGACATCTTTTTCTAGCTACCGTAGTTTTTGAGCTATGCGCCTTTAAAGTTGGCGCGCCTCCCCCACTGGTGGGCGGCGACCAGTGGGGGAGCAGGTCCACTTTAAAGGCGCATATCTCAAAAAGTGCACTAGCTAGACAAGTTGAGCAACCTATGAAAATGTGAGAAATTTGATTTTGAACATTTTAGTAGTTGACATCTTTTTTCTAGATACCGTAGTTTTTGAGATTTTTGCCTTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAGATGTCCACTTGAT</pcr_primer_p1>
		<pcr_primer_p2>TCCTTTTCAAATGATTTACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAGATGTCCACTTGATCCCAGAAAGAGCACAAAAAGCCATGGACTCGAGTTCTCTATGCCTTCCGGAATCACAGCTTCGACTGTCTGGATCAACGCTGGAATCATTTTTGTATACTGTACTCTTCCCGCCAATTTGTCTTTTTGGTGTCGTTGGAAATGCGTTGACCATTTTGGTGCTGGTTAATAATGATTTTATGTCCAGGTGAGCAGTTTTGAAAGAAAAAAAAGTAAATCATTTGAAAAGGA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAGATGTCCACTTGATCCCAGAAAGAGCACAAAAAGCCATGGACTCGAGTTCTCTATGCCTTCCGGAATCACAGCTTCGACTGTCTGGATCAACGCTGGAATCATTTTTGTATACTGTACTCTTCCCGCCAATTTGTCTWTTTGGTGTCGTTGGAAATGCGTTGACCATTTTGGTGCTGGTTAATAATGATTTTATGTCCAGGTGAGCAGTTTTGAAAGAAAAAAAAGTAAATCATTTGAAAAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2751</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>393961</contig_pos>
        <strand>+</strand>
        <context>AGAAATACCA[C/T]TTTTTCACAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCTAGCTTTTACAATTTTTAAGATATGACGCCTAGAAGAAGAAATACCA</left_flank>
        <right_flank>TTTTTCACAAATTCAGCTAACCCCTTTGGAAAATCTTTGGAAAATCCAGG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCACTTTAAAGGCGCATATCTCAAACAATAGGAAAGCTAGAAAAAAGTGGAAAACCACAAAAATGTAAAGCATAAAATTTTCCATATTTTCCTTTTTTCAAAATTCATCTAGCTTTAAAACTAACCGAGTTACACCCCTTTTTCGGAAAGAGAGACGCGAAGAAGCGAGAGTGCTCTCGTTTCTCTGCGTCTCCTCCATTACCTCTAGTTAGAGGGTTATATCTCAGGAACTGTTAGAGCTAGAAGAAATATTCTAAGAAAATTTGAACTCTGTTCTCTGTATGCTTCAAAATGAATATGAACGCCCTAAGTATAAGAAATTTCATTTAAAAGAGACTACCTTCCTTTAAAGGCGCATACCTCTAAAACTAAGAAAGCTAGAAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATTATCTTAATTTTATTTGTTAACATTATTTTCCTAGCTTTTACAATTTTTAAGATATGACGCCTAGAAGAAGAAATACCATTTTTTCACAAATTCAGCTAACCCCTTTGGAAAATCTTTGGAAAATCCAGGAAATGTCTGATCCCAATTCTTGAGCCTTATTTTTGGAGTTTGATCTTTGTTCATTTTGTATGAGCGTCATTCGGAAAACTCCAAAATTCATTTTTTGAATGAATCACTAAAATTTTTCTGTTATTTTTGATCCATTTCTATCCGTTTTGGCTCCGCCCACTTTTTCCAGTTATCCAGATCATTTTATTTTTTGCTTTGTCATTTTGTACCTCATCTTATATATAGTACTTATGTTTTTGGAATTTTTGAAATATTTTTTTTCAAAATTCTAAAATTTAGATTTTTCCAGAAAATGAACAAAAATGATTACATTATCCTGGCACAAACTCTAAACACTATTTGCTATGTGATCACAATTGCAGTGGGAATCGGAGGCAACTTTTGGGTTTCTTGGAAGGTGAGCAATCGTTTTTATTCAAAAATTGTATTTTTGTGATTTTTGGAATCCTA</canonical>
            <polymorphic>GCCACTTTAAAGGCGCATATCTCAAACAATAGGAAAGCTAGAAAAAAGTGGAAAACCACAAAAATGTAAAGCATAAAATTTTCCATATTTTCCTTTTTTCAAAATTCATCTAGCTTTAAAACTAACCGAGTTACACCCCTTTTTCGGAAAGAGAGACGCGAAGAAGCGAGAGTGCTCTCGTTTCTCTGCGTCTCCTCCATTACCTCTAGTTAGAGGGTTATATCTCAGGAACTGTTAGAGCTAGAAGAAATATTCTAAGAAAATTTGAACTCTGTTCTCTGTATGCTTCAAAATGAATATGAACGCCCTAAGTATAAGAAATTTCATTTAAAAGAGACTACCTTCCTTTAAAGGCGCATACCTCTAAAACTAAGAAAGCTAGAAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATTATCTTAATTTTATTTGTTAACATTATTTTCCTAGCTTTTACAATTTTTAAGATATGACGCCTAGAAGAAGAAATACCAYTTTTTCACAAATTCAGCTAACCCCTTTGGAAAATCTTTGGAAAATCCAGGAAATGTCTGATCCCAATTCTTGAGCCTTATTTTTGGAGTTTGATCTTTGTTCATTTTGTATGAGCGTCATTCGGAAAACTCCAAAATTCATTTTTTGAATGAATCACTAAAATTTTTCTGTTATTTTTGATCCATTTCTATCCGTTTTGGCTCCGCCCACTTTTTCCAGTTATCCAGATCATTTTATTTTTTGCTTTGTCATTTTGTACCTCATCTTATATATAGTACTTATGTTTTTGGAATTTTTGAAATATTTTTTTTCAAAATTCTAAAATTTAGATTTTTCCAGAAAATGAACAAAAATGATTACATTATCCTGGCACAAACTCTAAACACTATTTGCTATGTGATCACAATTGCAGTGGGAATCGGAGGCAACTTTTGGGTTTCTTGGAAGGTGAGCAATCGTTTTTATTCAAAAATTGTATTTTTGTGATTTTTGGAATCCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGAACGCCCTAAGTATAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGATTTTCCAAAGATT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TATGAACGCCCTAAGTATAAGAAATTTCATTTAAAAGAGACTACCTTCCTTTAAAGGCGCATACCTCTAAAACTAAGAAAGCTAGAAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATTATCTTAATTTTATTTGTTAACATTATTTTCCTAGCTTTTACAATTTTTAAGATATGACGCCTAGAAGAAGAAATACCATTTTTTCACAAATTCAGCTAACCCCTTTGGAAAATCTTTGGAAAATCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>TATGAACGCCCTAAGTATAAGAAATTTCATTTAAAAGAGACTACCTTCCTTTAAAGGCGCATACCTCTAAAACTAAGAAAGCTAGAAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATTATCTTAATTTTATTTGTTAACATTATTTTCCTAGCTTTTACAATTTTTAAGATATGACGCCTAGAAGAAGAAATACCAYTTTTTCACAAATTCAGCTAACCCCTTTGGAAAATCTTTGGAAAATCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2752</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>394047</contig_pos>
        <strand>+</strand>
        <context>CTTATTTTTG[A/G]AGTYTGATCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGGAAAATCCAGGAAATGTCTGATCCCAATTCTTGAGCCTTATTTTTG</left_flank>
        <right_flank>AGTTTGATCTTTGTTCATTTTGTATGAGCGTCATTCGGAAAACTCCAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTCCTTTTTTCAAAATTCATCTAGCTTTAAAACTAACCGAGTTACACCCCTTTTTCGGAAAGAGAGACGCGAAGAAGCGAGAGTGCTCTCGTTTCTCTGCGTCTCCTCCATTACCTCTAGTTAGAGGGTTATATCTCAGGAACTGTTAGAGCTAGAAGAAATATTCTAAGAAAATTTGAACTCTGTTCTCTGTATGCTTCAAAATGAATATGAACGCCCTAAGTATAAGAAATTTCATTTAAAAGAGACTACCTTCCTTTAAAGGCGCATACCTCTAAAACTAAGAAAGCTAGAAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATTATCTTAATTTTATTTGTTAACATTATTTTCCTAGCTTTTACAATTTTTAAGATATGACGCCTAGAAGAAGAAATACCATTTTTTCACAAATTCAGCTAACCCCTTTGGAAAATCTTTGGAAAATCCAGGAAATGTCTGATCCCAATTCTTGAGCCTTATTTTTGGAGTTTGATCTTTGTTCATTTTGTATGAGCGTCATTCGGAAAACTCCAAAATTCATTTTTTGAATGAATCACTAAAATTTTTCTGTTATTTTTGATCCATTTCTATCCGTTTTGGCTCCGCCCACTTTTTCCAGTTATCCAGATCATTTTATTTTTTGCTTTGTCATTTTGTACCTCATCTTATATATAGTACTTATGTTTTTGGAATTTTTGAAATATTTTTTTTCAAAATTCTAAAATTTAGATTTTTCCAGAAAATGAACAAAAATGATTACATTATCCTGGCACAAACTCTAAACACTATTTGCTATGTGATCACAATTGCAGTGGGAATCGGAGGCAACTTTTGGGTTTCTTGGAAGGTGAGCAATCGTTTTTATTCAAAAATTGTATTTTTGTGATTTTTGGAATCCTAAAAAGTGGAAATGTTAGATTTTAAAGGTTTTGATAAGTTTTTAAACCTGGAAAACCAGATTTTACTGTTTATTTTGACCTATAACA</canonical>
            <polymorphic>ATTTTCCTTTTTTCAAAATTCATCTAGCTTTAAAACTAACCGAGTTACACCCCTTTTTCGGAAAGAGAGACGCGAAGAAGCGAGAGTGCTCTCGTTTCTCTGCGTCTCCTCCATTACCTCTAGTTAGAGGGTTATATCTCAGGAACTGTTAGAGCTAGAAGAAATATTCTAAGAAAATTTGAACTCTGTTCTCTGTATGCTTCAAAATGAATATGAACGCCCTAAGTATAAGAAATTTCATTTAAAAGAGACTACCTTCCTTTAAAGGCGCATACCTCTAAAACTAAGAAAGCTAGAAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATTATCTTAATTTTATTTGTTAACATTATTTTCCTAGCTTTTACAATTTTTAAGATATGACGCCTAGAAGAAGAAATACCATTTTTTCACAAATTCAGCTAACCCCTTTGGAAAATCTTTGGAAAATCCAGGAAATGTCTGATCCCAATTCTTGAGCCTTATTTTTGRAGTTTGATCTTTGTTCATTTTGTATGAGCGTCATTCGGAAAACTCCAAAATTCATTTTTTGAATGAATCACTAAAATTTTTCTGTTATTTTTGATCCATTTCTATCCGTTTTGGCTCCGCCCACTTTTTCCAGTTATCCAGATCATTTTATTTTTTGCTTTGTCATTTTGTACCTCATCTTATATATAGTACTTATGTTTTTGGAATTTTTGAAATATTTTTTTTCAAAATTCTAAAATTTAGATTTTTCCAGAAAATGAACAAAAATGATTACATTATCCTGGCACAAACTCTAAACACTATTTGCTATGTGATCACAATTGCAGTGGGAATCGGAGGCAACTTTTGGGTTTCTTGGAAGGTGAGCAATCGTTTTTATTCAAAAATTGTATTTTTGTGATTTTTGGAATCCTAAAAAGTGGAAATGTTAGATTTTAAAGGTTTTGATAAGTTTTTAAACCTGGAAAACCAGATTTTACTGTTTATTTTGACCTATAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAACCCCTTTGGAAAATCT</pcr_primer_p1>
		<pcr_primer_p2>AGATGAGGTACAAAATGACAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAACCCCTTTGGAAAATCTTTGGAAAATCCAGGAAATGTCTGATCCCAATTCTTGAGCCTTATTTTTGGAGTTTGATCTTTGTTCATTTTGTATGAGCGTCATTCGGAAAACTCCAAAATTCATTTTTTGAATGAATCACTAAAATTTTTCTGTTATTTTTGATCCATTTCTATCCGTTTTGGCTCCGCCCACTTTTTCCAGTTATCCAGATCATTTTATTTTTTGCTTTGTCATTTTGTACCTCATCT</canonical_amplicon>
		<polymorphic_amplicon>CTAACCCCTTTGGAAAATCTTTGGAAAATCCAGGAAATGTCTGATCCCAATTCTTGAGCCTTATTTTTGRAGTTTGATCTTTGTTCATTTTGTATGAGCGTCATTCGGAAAACTCCAAAATTCATTTTTTGAATGAATCACTAAAATTTTTCTGTTATTTTTGATCCATTTCTATCCGTTTTGGCTCCGCCCACTTTTTCCAGTTATCCAGATCATTTTATTTTTTGCTTTGTCATTTTGTACCTCATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2753</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>394051</contig_pos>
        <strand>+</strand>
        <context>TTTTTGRAGT[C/T]TGATCTTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAATCCAGGAAATGTCTGATCCCAATTCTTGAGCCTTATTTTTGGAGT</left_flank>
        <right_flank>TGATCTTTGTTCATTTTGTATGAGCGTCATTCGGAAAACTCCAAAATTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTTTTTTCAAAATTCATCTAGCTTTAAAACTAACCGAGTTACACCCCTTTTTCGGAAAGAGAGACGCGAAGAAGCGAGAGTGCTCTCGTTTCTCTGCGTCTCCTCCATTACCTCTAGTTAGAGGGTTATATCTCAGGAACTGTTAGAGCTAGAAGAAATATTCTAAGAAAATTTGAACTCTGTTCTCTGTATGCTTCAAAATGAATATGAACGCCCTAAGTATAAGAAATTTCATTTAAAAGAGACTACCTTCCTTTAAAGGCGCATACCTCTAAAACTAAGAAAGCTAGAAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATTATCTTAATTTTATTTGTTAACATTATTTTCCTAGCTTTTACAATTTTTAAGATATGACGCCTAGAAGAAGAAATACCATTTTTTCACAAATTCAGCTAACCCCTTTGGAAAATCTTTGGAAAATCCAGGAAATGTCTGATCCCAATTCTTGAGCCTTATTTTTGGAGTTTGATCTTTGTTCATTTTGTATGAGCGTCATTCGGAAAACTCCAAAATTCATTTTTTGAATGAATCACTAAAATTTTTCTGTTATTTTTGATCCATTTCTATCCGTTTTGGCTCCGCCCACTTTTTCCAGTTATCCAGATCATTTTATTTTTTGCTTTGTCATTTTGTACCTCATCTTATATATAGTACTTATGTTTTTGGAATTTTTGAAATATTTTTTTTCAAAATTCTAAAATTTAGATTTTTCCAGAAAATGAACAAAAATGATTACATTATCCTGGCACAAACTCTAAACACTATTTGCTATGTGATCACAATTGCAGTGGGAATCGGAGGCAACTTTTGGGTTTCTTGGAAGGTGAGCAATCGTTTTTATTCAAAAATTGTATTTTTGTGATTTTTGGAATCCTAAAAAGTGGAAATGTTAGATTTTAAAGGTTTTGATAAGTTTTTAAACCTGGAAAACCAGATTTTACTGTTTATTTTGACCTATAACATCGG</canonical>
            <polymorphic>TCCTTTTTTCAAAATTCATCTAGCTTTAAAACTAACCGAGTTACACCCCTTTTTCGGAAAGAGAGACGCGAAGAAGCGAGAGTGCTCTCGTTTCTCTGCGTCTCCTCCATTACCTCTAGTTAGAGGGTTATATCTCAGGAACTGTTAGAGCTAGAAGAAATATTCTAAGAAAATTTGAACTCTGTTCTCTGTATGCTTCAAAATGAATATGAACGCCCTAAGTATAAGAAATTTCATTTAAAAGAGACTACCTTCCTTTAAAGGCGCATACCTCTAAAACTAAGAAAGCTAGAAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATTATCTTAATTTTATTTGTTAACATTATTTTCCTAGCTTTTACAATTTTTAAGATATGACGCCTAGAAGAAGAAATACCATTTTTTCACAAATTCAGCTAACCCCTTTGGAAAATCTTTGGAAAATCCAGGAAATGTCTGATCCCAATTCTTGAGCCTTATTTTTGGAGTYTGATCTTTGTTCATTTTGTATGAGCGTCATTCGGAAAACTCCAAAATTCATTTTTTGAATGAATCACTAAAATTTTTCTGTTATTTTTGATCCATTTCTATCCGTTTTGGCTCCGCCCACTTTTTCCAGTTATCCAGATCATTTTATTTTTTGCTTTGTCATTTTGTACCTCATCTTATATATAGTACTTATGTTTTTGGAATTTTTGAAATATTTTTTTTCAAAATTCTAAAATTTAGATTTTTCCAGAAAATGAACAAAAATGATTACATTATCCTGGCACAAACTCTAAACACTATTTGCTATGTGATCACAATTGCAGTGGGAATCGGAGGCAACTTTTGGGTTTCTTGGAAGGTGAGCAATCGTTTTTATTCAAAAATTGTATTTTTGTGATTTTTGGAATCCTAAAAAGTGGAAATGTTAGATTTTAAAGGTTTTGATAAGTTTTTAAACCTGGAAAACCAGATTTTACTGTTTATTTTGACCTATAACATCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAACCCCTTTGGAAAATCT</pcr_primer_p1>
		<pcr_primer_p2>AGATGAGGTACAAAATGACAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAACCCCTTTGGAAAATCTTTGGAAAATCCAGGAAATGTCTGATCCCAATTCTTGAGCCTTATTTTTGGAGTTTGATCTTTGTTCATTTTGTATGAGCGTCATTCGGAAAACTCCAAAATTCATTTTTTGAATGAATCACTAAAATTTTTCTGTTATTTTTGATCCATTTCTATCCGTTTTGGCTCCGCCCACTTTTTCCAGTTATCCAGATCATTTTATTTTTTGCTTTGTCATTTTGTACCTCATCT</canonical_amplicon>
		<polymorphic_amplicon>CTAACCCCTTTGGAAAATCTTTGGAAAATCCAGGAAATGTCTGATCCCAATTCTTGAGCCTTATTTTTGGAGTYTGATCTTTGTTCATTTTGTATGAGCGTCATTCGGAAAACTCCAAAATTCATTTTTTGAATGAATCACTAAAATTTTTCTGTTATTTTTGATCCATTTCTATCCGTTTTGGCTCCGCCCACTTTTTCCAGTTATCCAGATCATTTTATTTTTTGCTTTGTCATTTTGTACCTCATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2754</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>394103</contig_pos>
        <strand>+</strand>
        <context>CAAAATTCAT[G/T]TTTTGAATGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATCTTTGTTCATTTTGTATGAGCGTCATTCGGAAAACTCCAAAATTCAT</left_flank>
        <right_flank>TTTTGAATGAATCACTAAAATTTTTCTGTTATTTTTGATCCATTTCTATC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGGAAAGAGAGACGCGAAGAAGCGAGAGTGCTCTCGTTTCTCTGCGTCTCCTCCATTACCTCTAGTTAGAGGGTTATATCTCAGGAACTGTTAGAGCTAGAAGAAATATTCTAAGAAAATTTGAACTCTGTTCTCTGTATGCTTCAAAATGAATATGAACGCCCTAAGTATAAGAAATTTCATTTAAAAGAGACTACCTTCCTTTAAAGGCGCATACCTCTAAAACTAAGAAAGCTAGAAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATTATCTTAATTTTATTTGTTAACATTATTTTCCTAGCTTTTACAATTTTTAAGATATGACGCCTAGAAGAAGAAATACCATTTTTTCACAAATTCAGCTAACCCCTTTGGAAAATCTTTGGAAAATCCAGGAAATGTCTGATCCCAATTCTTGAGCCTTATTTTTGGAGTTTGATCTTTGTTCATTTTGTATGAGCGTCATTCGGAAAACTCCAAAATTCATTTTTTGAATGAATCACTAAAATTTTTCTGTTATTTTTGATCCATTTCTATCCGTTTTGGCTCCGCCCACTTTTTCCAGTTATCCAGATCATTTTATTTTTTGCTTTGTCATTTTGTACCTCATCTTATATATAGTACTTATGTTTTTGGAATTTTTGAAATATTTTTTTTCAAAATTCTAAAATTTAGATTTTTCCAGAAAATGAACAAAAATGATTACATTATCCTGGCACAAACTCTAAACACTATTTGCTATGTGATCACAATTGCAGTGGGAATCGGAGGCAACTTTTGGGTTTCTTGGAAGGTGAGCAATCGTTTTTATTCAAAAATTGTATTTTTGTGATTTTTGGAATCCTAAAAAGTGGAAATGTTAGATTTTAAAGGTTTTGATAAGTTTTTAAACCTGGAAAACCAGATTTTACTGTTTATTTTGACCTATAACATCGGTTTTTGCAAATTGAAGATATGGAATTGTTGAGAGAAATGAAGAAAAAACGGG</canonical>
            <polymorphic>TTCGGAAAGAGAGACGCGAAGAAGCGAGAGTGCTCTCGTTTCTCTGCGTCTCCTCCATTACCTCTAGTTAGAGGGTTATATCTCAGGAACTGTTAGAGCTAGAAGAAATATTCTAAGAAAATTTGAACTCTGTTCTCTGTATGCTTCAAAATGAATATGAACGCCCTAAGTATAAGAAATTTCATTTAAAAGAGACTACCTTCCTTTAAAGGCGCATACCTCTAAAACTAAGAAAGCTAGAAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATTATCTTAATTTTATTTGTTAACATTATTTTCCTAGCTTTTACAATTTTTAAGATATGACGCCTAGAAGAAGAAATACCATTTTTTCACAAATTCAGCTAACCCCTTTGGAAAATCTTTGGAAAATCCAGGAAATGTCTGATCCCAATTCTTGAGCCTTATTTTTGGAGTTTGATCTTTGTTCATTTTGTATGAGCGTCATTCGGAAAACTCCAAAATTCATKTTTTGAATGAATCACTAAAATTTTTCTGTTATTTTTGATCCATTTCTATCCGTTTTGGCTCCGCCCACTTTTTCCAGTTATCCAGATCATTTTATTTTTTGCTTTGTCATTTTGTACCTCATCTTATATATAGTACTTATGTTTTTGGAATTTTTGAAATATTTTTTTTCAAAATTCTAAAATTTAGATTTTTCCAGAAAATGAACAAAAATGATTACATTATCCTGGCACAAACTCTAAACACTATTTGCTATGTGATCACAATTGCAGTGGGAATCGGAGGCAACTTTTGGGTTTCTTGGAAGGTGAGCAATCGTTTTTATTCAAAAATTGTATTTTTGTGATTTTTGGAATCCTAAAAAGTGGAAATGTTAGATTTTAAAGGTTTTGATAAGTTTTTAAACCTGGAAAACCAGATTTTACTGTTTATTTTGACCTATAACATCGGTTTTTGCAAATTGAAGATATGGAATTGTTGAGAGAAATGAAGAAAAAACGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGTCTGATCCCAATTCTT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAAATTCCAAAAACATAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATGTCTGATCCCAATTCTTGAGCCTTATTTTTGGAGTTTGATCTTTGTTCATTTTGTATGAGCGTCATTCGGAAAACTCCAAAATTCATTTTTTGAATGAATCACTAAAATTTTTCTGTTATTTTTGATCCATTTCTATCCGTTTTGGCTCCGCCCACTTTTTCCAGTTATCCAGATCATTTTATTTTTTGCTTTGTCATTTTGTACCTCATCTTATATATAGTACTTATGTTTTTGGAATTTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>AAATGTCTGATCCCAATTCTTGAGCCTTATTTTTGGAGTTTGATCTTTGTTCATTTTGTATGAGCGTCATTCGGAAAACTCCAAAATTCATKTTTTGAATGAATCACTAAAATTTTTCTGTTATTTTTGATCCATTTCTATCCGTTTTGGCTCCGCCCACTTTTTCCAGTTATCCAGATCATTTTATTTTTTGCTTTGTCATTTTGTACCTCATCTTATATATAGTACTTATGTTTTTGGAATTTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2755</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>394174</contig_pos>
        <strand>+</strand>
        <context>CCGCCCACTT[A/T]TTCCAGTTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTCTGTTATTTTTGATCCATTTCTATCCGTTTTGGCTCCGCCCACTT</left_flank>
        <right_flank>TTCCAGTTATCCAGATCATTTTATTTTTTGCTTTGTCATTTTGTACCTCA</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGGTTATATCTCAGGAACTGTTAGAGCTAGAAGAAATATTCTAAGAAAATTTGAACTCTGTTCTCTGTATGCTTCAAAATGAATATGAACGCCCTAAGTATAAGAAATTTCATTTAAAAGAGACTACCTTCCTTTAAAGGCGCATACCTCTAAAACTAAGAAAGCTAGAAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATTATCTTAATTTTATTTGTTAACATTATTTTCCTAGCTTTTACAATTTTTAAGATATGACGCCTAGAAGAAGAAATACCATTTTTTCACAAATTCAGCTAACCCCTTTGGAAAATCTTTGGAAAATCCAGGAAATGTCTGATCCCAATTCTTGAGCCTTATTTTTGGAGTTTGATCTTTGTTCATTTTGTATGAGCGTCATTCGGAAAACTCCAAAATTCATTTTTTGAATGAATCACTAAAATTTTTCTGTTATTTTTGATCCATTTCTATCCGTTTTGGCTCCGCCCACTTTTTCCAGTTATCCAGATCATTTTATTTTTTGCTTTGTCATTTTGTACCTCATCTTATATATAGTACTTATGTTTTTGGAATTTTTGAAATATTTTTTTTCAAAATTCTAAAATTTAGATTTTTCCAGAAAATGAACAAAAATGATTACATTATCCTGGCACAAACTCTAAACACTATTTGCTATGTGATCACAATTGCAGTGGGAATCGGAGGCAACTTTTGGGTTTCTTGGAAGGTGAGCAATCGTTTTTATTCAAAAATTGTATTTTTGTGATTTTTGGAATCCTAAAAAGTGGAAATGTTAGATTTTAAAGGTTTTGATAAGTTTTTAAACCTGGAAAACCAGATTTTACTGTTTATTTTGACCTATAACATCGGTTTTTGCAAATTGAAGATATGGAATTGTTGAGAGAAATGAAGAAAAAACGGGCATAGTTAGGTTTTTCGGAGATTTTTGAGTTTTGAAGGACAAAAAATACACTAAAACCAATCGATTTTTTG</canonical>
            <polymorphic>AGGGTTATATCTCAGGAACTGTTAGAGCTAGAAGAAATATTCTAAGAAAATTTGAACTCTGTTCTCTGTATGCTTCAAAATGAATATGAACGCCCTAAGTATAAGAAATTTCATTTAAAAGAGACTACCTTCCTTTAAAGGCGCATACCTCTAAAACTAAGAAAGCTAGAAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATTATCTTAATTTTATTTGTTAACATTATTTTCCTAGCTTTTACAATTTTTAAGATATGACGCCTAGAAGAAGAAATACCATTTTTTCACAAATTCAGCTAACCCCTTTGGAAAATCTTTGGAAAATCCAGGAAATGTCTGATCCCAATTCTTGAGCCTTATTTTTGGAGTTTGATCTTTGTTCATTTTGTATGAGCGTCATTCGGAAAACTCCAAAATTCATTTTTTGAATGAATCACTAAAATTTTTCTGTTATTTTTGATCCATTTCTATCCGTTTTGGCTCCGCCCACTTWTTCCAGTTATCCAGATCATTTTATTTTTTGCTTTGTCATTTTGTACCTCATCTTATATATAGTACTTATGTTTTTGGAATTTTTGAAATATTTTTTTTCAAAATTCTAAAATTTAGATTTTTCCAGAAAATGAACAAAAATGATTACATTATCCTGGCACAAACTCTAAACACTATTTGCTATGTGATCACAATTGCAGTGGGAATCGGAGGCAACTTTTGGGTTTCTTGGAAGGTGAGCAATCGTTTTTATTCAAAAATTGTATTTTTGTGATTTTTGGAATCCTAAAAAGTGGAAATGTTAGATTTTAAAGGTTTTGATAAGTTTTTAAACCTGGAAAACCAGATTTTACTGTTTATTTTGACCTATAACATCGGTTTTTGCAAATTGAAGATATGGAATTGTTGAGAGAAATGAAGAAAAAACGGGCATAGTTAGGTTTTTCGGAGATTTTTGAGTTTTGAAGGACAAAAAATACACTAAAACCAATCGATTTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGTCTGATCCCAATTCTT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAAATTCCAAAAACATAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATGTCTGATCCCAATTCTTGAGCCTTATTTTTGGAGTTTGATCTTTGTTCATTTTGTATGAGCGTCATTCGGAAAACTCCAAAATTCATTTTTTGAATGAATCACTAAAATTTTTCTGTTATTTTTGATCCATTTCTATCCGTTTTGGCTCCGCCCACTTTTTCCAGTTATCCAGATCATTTTATTTTTTGCTTTGTCATTTTGTACCTCATCTTATATATAGTACTTATGTTTTTGGAATTTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>AAATGTCTGATCCCAATTCTTGAGCCTTATTTTTGGAGTTTGATCTTTGTTCATTTTGTATGAGCGTCATTCGGAAAACTCCAAAATTCATTTTTTGAATGAATCACTAAAATTTTTCTGTTATTTTTGATCCATTTCTATCCGTTTTGGCTCCGCCCACTTWTTCCAGTTATCCAGATCATTTTATTTTTTGCTTTGTCATTTTGTACCTCATCTTATATATAGTACTTATGTTTTTGGAATTTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2756</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>398317</contig_pos>
        <strand>+</strand>
        <context>TCGAAGAGGA[C/T]GAGGAGCCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTGTTGGAATTTCGAAAATCCACGTGTCAAGTGTAGATGTCGAAGAGGA</left_flank>
        <right_flank>GAGGAGCCACCGACGACTCAGATCTTTTTGTAGTAGATCAAAACTTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCAGAGAGGCGAGAGCGCTCTCGTTTCTCTGCGTCTCCCCCCTCCCTCTCCCTAGTGATGGAGGGCGTGCTTTCCTGGCTTAATTTTAAAACGTTATATCTCAAAAACTAAAACAGCTACTAAATTATTTACAACTACAAAGATGTGTAAAATTTAATGCTTTACAATTTTGTAGTTAAAACAATTTTGCTAGCTATTCTAGTTTTGGAGATACAGCTTGTCAAAAAAGGTAAACTCTTTTTCTCACTATTTTGAGTTTATTTCAAGGACGGTAGGAGCTACAAAAATGGTCCCAACTAGAAAAACGCGCCAAATTACAATCTTAAGCCAAAAAACTTTCAGATGATAACCGCACAACTTGGATTTGTGCAAACGTGGCTGCGAGACGATCAGAATGGCGGCACACTAGCTCCAAGTCTGATTAGTCCCAGATGGAGCTCTTCTGGAAGTGTTGGAATTTCGAAAATCCACGTGTCAAGTGTAGATGTCGAAGAGGATGAGGAGCCACCGACGACTCAGATCTTTTTGTAGTAGATCAAAACTTTTTTGTCTTTTTCGTCATATTTTTTAAGGCATCTCATGTTTTCGGGTCGTTTTTAAAGCTGAAATAAACGTTTTTTTTCAAATCTTCGTGAAAATCGATATTTCTGAAACTATAAAACATCAAGTTAGCTCAAAAATGTGCTCTGGAACCCCTAAAAACCTTTAAAACTGCTAGAATCCCTTAAAAACCACGAAAATCAACGTTTCAAAAAAATTCGGTCAGATGGTTCAGGTGAGTTTGGAATTTTTAATTGGAAAAATCGATATTTTTGAGAAAAATAACCTTAAAAATTGTTTAAAATCTATGAAACCTTCAAAAATTGATAAAAATCTATGTTTTTCAAAAATTTGGTCAGATGGCCTAGTGGATTTTTGGGTATGAGAATTTAAGAATCTCAACACCAGGGTTCGATTCCTTTCGGTGCCAAATTATTTTTGCTTTTGTGTAGAGGTTC</canonical>
            <polymorphic>AGTCAGAGAGGCGAGAGCGCTCTCGTTTCTCTGCGTCTCCCCCCTCCCTCTCCCTAGTGATGGAGGGCGTGCTTTCCTGGCTTAATTTTAAAACGTTATATCTCAAAAACTAAAACAGCTACTAAATTATTTACAACTACAAAGATGTGTAAAATTTAATGCTTTACAATTTTGTAGTTAAAACAATTTTGCTAGCTATTCTAGTTTTGGAGATACAGCTTGTCAAAAAAGGTAAACTCTTTTTCTCACTATTTTGAGTTTATTTCAAGGACGGTAGGAGCTACAAAAATGGTCCCAACTAGAAAAACGCGCCAAATTACAATCTTAAGCCAAAAAACTTTCAGATGATAACCGCACAACTTGGATTTGTGCAAACGTGGCTGCGAGACGATCAGAATGGCGGCACACTAGCTCCAAGTCTGATTAGTCCCAGATGGAGCTCTTCTGGAAGTGTTGGAATTTCGAAAATCCACGTGTCAAGTGTAGATGTCGAAGAGGAYGAGGAGCCACCGACGACTCAGATCTTTTTGTAGTAGATCAAAACTTTTTTGTCTTTTTCGTCATATTTTTTAAGGCATCTCATGTTTTCGGGTCGTTTTTAAAGCTGAAATAAACGTTTTTTTTCAAATCTTCGTGAAAATCGATATTTCTGAAACTATAAAACATCAAGTTAGCTCAAAAATGTGCTCTGGAACCCCTAAAAACCTTTAAAACTGCTAGAATCCCTTAAAAACCACGAAAATCAACGTTTCAAAAAAATTCGGTCAGATGGTTCAGGTGAGTTTGGAATTTTTAATTGGAAAAATCGATATTTTTGAGAAAAATAACCTTAAAAATTGTTTAAAATCTATGAAACCTTCAAAAATTGATAAAAATCTATGTTTTTCAAAAATTTGGTCAGATGGCCTAGTGGATTTTTGGGTATGAGAATTTAAGAATCTCAACACCAGGGTTCGATTCCTTTCGGTGCCAAATTATTTTTGCTTTTGTGTAGAGGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTAGCTCCAAGTCTGATTAGT</pcr_primer_p1>
		<pcr_primer_p2>AATATCGATTTTCACGAAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CACTAGCTCCAAGTCTGATTAGTCCCAGATGGAGCTCTTCTGGAAGTGTTGGAATTTCGAAAATCCACGTGTCAAGTGTAGATGTCGAAGAGGATGAGGAGCCACCGACGACTCAGATCTTTTTGTAGTAGATCAAAACTTTTTTGTCTTTTTCGTCATATTTTTTAAGGCATCTCATGTTTTCGGGTCGTTTTTAAAGCTGAAATAAACGTTTTTTTTCAAATCTTCGTGAAAATCGATATT</canonical_amplicon>
		<polymorphic_amplicon>CACTAGCTCCAAGTCTGATTAGTCCCAGATGGAGCTCTTCTGGAAGTGTTGGAATTTCGAAAATCCACGTGTCAAGTGTAGATGTCGAAGAGGAYGAGGAGCCACCGACGACTCAGATCTTTTTGTAGTAGATCAAAACTTTTTTGTCTTTTTCGTCATATTTTTTAAGGCATCTCATGTTTTCGGGTCGTTTTTAAAGCTGAAATAAACGTTTTTTTTCAAATCTTCGTGAAAATCGATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2757</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>398159</contig_pos>
        <strand>+</strand>
        <context>AAAAAACTTT[C/T]AGATGATAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCCCAACTAGAAAAACGCGCCAAATTACAATCTTAAGCCAAAAAACTTT</left_flank>
        <right_flank>AGATGATAACCGCACAACTTGGATTTGTGCAAACGTGGCTGCGAGACGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGCTGGGGCTTATCAGGTAACTTTGAAACGAAATATCTCAAAAACCAAGCTAGGAGAATATTTATAACTACCAAAATGTAGAACATAAAATTTTACACAACTTCCTCTTTCCAAAATTCATCTAGCTCTTAAATTAGCCGAGTTACCCCTTTTTGCAAGTCAGAGAGGCGAGAGCGCTCTCGTTTCTCTGCGTCTCCCCCCTCCCTCTCCCTAGTGATGGAGGGCGTGCTTTCCTGGCTTAATTTTAAAACGTTATATCTCAAAAACTAAAACAGCTACTAAATTATTTACAACTACAAAGATGTGTAAAATTTAATGCTTTACAATTTTGTAGTTAAAACAATTTTGCTAGCTATTCTAGTTTTGGAGATACAGCTTGTCAAAAAAGGTAAACTCTTTTTCTCACTATTTTGAGTTTATTTCAAGGACGGTAGGAGCTACAAAAATGGTCCCAACTAGAAAAACGCGCCAAATTACAATCTTAAGCCAAAAAACTTTCAGATGATAACCGCACAACTTGGATTTGTGCAAACGTGGCTGCGAGACGATCAGAATGGCGGCACACTAGCTCCAAGTCTGATTAGTCCCAGATGGAGCTCTTCTGGAAGTGTTGGAATTTCGAAAATCCACGTGTCAAGTGTAGATGTCGAAGAGGATGAGGAGCCACCGACGACTCAGATCTTTTTGTAGTAGATCAAAACTTTTTTGTCTTTTTCGTCATATTTTTTAAGGCATCTCATGTTTTCGGGTCGTTTTTAAAGCTGAAATAAACGTTTTTTTTCAAATCTTCGTGAAAATCGATATTTCTGAAACTATAAAACATCAAGTTAGCTCAAAAATGTGCTCTGGAACCCCTAAAAACCTTTAAAACTGCTAGAATCCCTTAAAAACCACGAAAATCAACGTTTCAAAAAAATTCGGTCAGATGGTTCAGGTGAGTTTGGAATTTTTAATTGGAAAAATCGATATTTTTGAGAAAAATAACCTTAAAAATTGTTT</canonical>
            <polymorphic>GAGCTGGGGCTTATCAGGTAACTTTGAAACGAAATATCTCAAAAACCAAGCTAGGAGAATATTTATAACTACCAAAATGTAGAACATAAAATTTTACACAACTTCCTCTTTCCAAAATTCATCTAGCTCTTAAATTAGCCGAGTTACCCCTTTTTGCAAGTCAGAGAGGCGAGAGCGCTCTCGTTTCTCTGCGTCTCCCCCCTCCCTCTCCCTAGTGATGGAGGGCGTGCTTTCCTGGCTTAATTTTAAAACGTTATATCTCAAAAACTAAAACAGCTACTAAATTATTTACAACTACAAAGATGTGTAAAATTTAATGCTTTACAATTTTGTAGTTAAAACAATTTTGCTAGCTATTCTAGTTTTGGAGATACAGCTTGTCAAAAAAGGTAAACTCTTTTTCTCACTATTTTGAGTTTATTTCAAGGACGGTAGGAGCTACAAAAATGGTCCCAACTAGAAAAACGCGCCAAATTACAATCTTAAGCCAAAAAACTTTYAGATGATAACCGCACAACTTGGATTTGTGCAAACGTGGCTGCGAGACGATCAGAATGGCGGCACACTAGCTCCAAGTCTGATTAGTCCCAGATGGAGCTCTTCTGGAAGTGTTGGAATTTCGAAAATCCACGTGTCAAGTGTAGATGTCGAAGAGGATGAGGAGCCACCGACGACTCAGATCTTTTTGTAGTAGATCAAAACTTTTTTGTCTTTTTCGTCATATTTTTTAAGGCATCTCATGTTTTCGGGTCGTTTTTAAAGCTGAAATAAACGTTTTTTTTCAAATCTTCGTGAAAATCGATATTTCTGAAACTATAAAACATCAAGTTAGCTCAAAAATGTGCTCTGGAACCCCTAAAAACCTTTAAAACTGCTAGAATCCCTTAAAAACCACGAAAATCAACGTTTCAAAAAAATTCGGTCAGATGGTTCAGGTGAGTTTGGAATTTTTAATTGGAAAAATCGATATTTTTGAGAAAAATAACCTTAAAAATTGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>338 163 131 116 99 75 51 27</canonical_bands>
                <polymorphic_bands>389 163 131 116 99 75 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTATTTTGAGTTTATTTCAAGGAC</pcr_primer_p1>
		<pcr_primer_p2>CTTCGACATCTACACTTGACAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACTATTTTGAGTTTATTTCAAGGACGGTAGGAGCTACAAAAATGGTCCCAACTAGAAAAACGCGCCAAATTACAATCTTAAGCCAAAAAACTTTCAGATGATAACCGCACAACTTGGATTTGTGCAAACGTGGCTGCGAGACGATCAGAATGGCGGCACACTAGCTCCAAGTCTGATTAGTCCCAGATGGAGCTCTTCTGGAAGTGTTGGAATTTCGAAAATCCACGTGTCAAGTGTAGATGTCGAAG</canonical_amplicon>
		<polymorphic_amplicon>ACTATTTTGAGTTTATTTCAAGGACGGTAGGAGCTACAAAAATGGTCCCAACTAGAAAAACGCGCCAAATTACAATCTTAAGCCAAAAAACTTTYAGATGATAACCGCACAACTTGGATTTGTGCAAACGTGGCTGCGAGACGATCAGAATGGCGGCACACTAGCTCCAAGTCTGATTAGTCCCAGATGGAGCTCTTCTGGAAGTGTTGGAATTTCGAAAATCCACGTGTCAAGTGTAGATGTCGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2758</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>398147</contig_pos>
        <strand>+</strand>
        <context>CAATCTKAAG[A/C]CAAAAAACTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCTACAAAAATGGTCCCAACTAGAAAAACGCGCCAAATTACAATCTTAAG</left_flank>
        <right_flank>CAAAAAACTTTCAGATGATAACCGCACAACTTGGATTTGTGCAAACGTGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATGACGATTCGAGCTGGGGCTTATCAGGTAACTTTGAAACGAAATATCTCAAAAACCAAGCTAGGAGAATATTTATAACTACCAAAATGTAGAACATAAAATTTTACACAACTTCCTCTTTCCAAAATTCATCTAGCTCTTAAATTAGCCGAGTTACCCCTTTTTGCAAGTCAGAGAGGCGAGAGCGCTCTCGTTTCTCTGCGTCTCCCCCCTCCCTCTCCCTAGTGATGGAGGGCGTGCTTTCCTGGCTTAATTTTAAAACGTTATATCTCAAAAACTAAAACAGCTACTAAATTATTTACAACTACAAAGATGTGTAAAATTTAATGCTTTACAATTTTGTAGTTAAAACAATTTTGCTAGCTATTCTAGTTTTGGAGATACAGCTTGTCAAAAAAGGTAAACTCTTTTTCTCACTATTTTGAGTTTATTTCAAGGACGGTAGGAGCTACAAAAATGGTCCCAACTAGAAAAACGCGCCAAATTACAATCTTAAGCCAAAAAACTTTCAGATGATAACCGCACAACTTGGATTTGTGCAAACGTGGCTGCGAGACGATCAGAATGGCGGCACACTAGCTCCAAGTCTGATTAGTCCCAGATGGAGCTCTTCTGGAAGTGTTGGAATTTCGAAAATCCACGTGTCAAGTGTAGATGTCGAAGAGGATGAGGAGCCACCGACGACTCAGATCTTTTTGTAGTAGATCAAAACTTTTTTGTCTTTTTCGTCATATTTTTTAAGGCATCTCATGTTTTCGGGTCGTTTTTAAAGCTGAAATAAACGTTTTTTTTCAAATCTTCGTGAAAATCGATATTTCTGAAACTATAAAACATCAAGTTAGCTCAAAAATGTGCTCTGGAACCCCTAAAAACCTTTAAAACTGCTAGAATCCCTTAAAAACCACGAAAATCAACGTTTCAAAAAAATTCGGTCAGATGGTTCAGGTGAGTTTGGAATTTTTAATTGGAAAAATCGATATTTTTGAGAAAAATAACCT</canonical>
            <polymorphic>TGATGACGATTCGAGCTGGGGCTTATCAGGTAACTTTGAAACGAAATATCTCAAAAACCAAGCTAGGAGAATATTTATAACTACCAAAATGTAGAACATAAAATTTTACACAACTTCCTCTTTCCAAAATTCATCTAGCTCTTAAATTAGCCGAGTTACCCCTTTTTGCAAGTCAGAGAGGCGAGAGCGCTCTCGTTTCTCTGCGTCTCCCCCCTCCCTCTCCCTAGTGATGGAGGGCGTGCTTTCCTGGCTTAATTTTAAAACGTTATATCTCAAAAACTAAAACAGCTACTAAATTATTTACAACTACAAAGATGTGTAAAATTTAATGCTTTACAATTTTGTAGTTAAAACAATTTTGCTAGCTATTCTAGTTTTGGAGATACAGCTTGTCAAAAAAGGTAAACTCTTTTTCTCACTATTTTGAGTTTATTTCAAGGACGGTAGGAGCTACAAAAATGGTCCCAACTAGAAAAACGCGCCAAATTACAATCTTAAGMCAAAAAACTTTCAGATGATAACCGCACAACTTGGATTTGTGCAAACGTGGCTGCGAGACGATCAGAATGGCGGCACACTAGCTCCAAGTCTGATTAGTCCCAGATGGAGCTCTTCTGGAAGTGTTGGAATTTCGAAAATCCACGTGTCAAGTGTAGATGTCGAAGAGGATGAGGAGCCACCGACGACTCAGATCTTTTTGTAGTAGATCAAAACTTTTTTGTCTTTTTCGTCATATTTTTTAAGGCATCTCATGTTTTCGGGTCGTTTTTAAAGCTGAAATAAACGTTTTTTTTCAAATCTTCGTGAAAATCGATATTTCTGAAACTATAAAACATCAAGTTAGCTCAAAAATGTGCTCTGGAACCCCTAAAAACCTTTAAAACTGCTAGAATCCCTTAAAAACCACGAAAATCAACGTTTCAAAAAAATTCGGTCAGATGGTTCAGGTGAGTTTGGAATTTTTAATTGGAAAAATCGATATTTTTGAGAAAAATAACCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>156 100 98 77 76 70 67 62 51 49 41 38 31 28 23 15 12 6</canonical_bands>
                <polymorphic_bands>156 100 100 98 77 76 70 67 62 41 38 31 28 23 15 12 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTATTTTGAGTTTATTTCAAGGAC</pcr_primer_p1>
		<pcr_primer_p2>CTTCGACATCTACACTTGACAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACTATTTTGAGTTTATTTCAAGGACGGTAGGAGCTACAAAAATGGTCCCAACTAGAAAAACGCGCCAAATTACAATCTTAAGCCAAAAAACTTTCAGATGATAACCGCACAACTTGGATTTGTGCAAACGTGGCTGCGAGACGATCAGAATGGCGGCACACTAGCTCCAAGTCTGATTAGTCCCAGATGGAGCTCTTCTGGAAGTGTTGGAATTTCGAAAATCCACGTGTCAAGTGTAGATGTCGAAG</canonical_amplicon>
		<polymorphic_amplicon>ACTATTTTGAGTTTATTTCAAGGACGGTAGGAGCTACAAAAATGGTCCCAACTAGAAAAACGCGCCAAATTACAATCTTAAGMCAAAAAACTTTCAGATGATAACCGCACAACTTGGATTTGTGCAAACGTGGCTGCGAGACGATCAGAATGGCGGCACACTAGCTCCAAGTCTGATTAGTCCCAGATGGAGCTCTTCTGGAAGTGTTGGAATTTCGAAAATCCACGTGTCAAGTGTAGATGTCGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2759</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>398143</contig_pos>
        <strand>+</strand>
        <context>ATTACAATCT[G/T]AAGMCAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGGAGCTACAAAAATGGTCCCAACTAGAAAAACGCGCCAAATTACAATCT</left_flank>
        <right_flank>AAGCCAAAAAACTTTCAGATGATAACCGCACAACTTGGATTTGTGCAAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTTGATGACGATTCGAGCTGGGGCTTATCAGGTAACTTTGAAACGAAATATCTCAAAAACCAAGCTAGGAGAATATTTATAACTACCAAAATGTAGAACATAAAATTTTACACAACTTCCTCTTTCCAAAATTCATCTAGCTCTTAAATTAGCCGAGTTACCCCTTTTTGCAAGTCAGAGAGGCGAGAGCGCTCTCGTTTCTCTGCGTCTCCCCCCTCCCTCTCCCTAGTGATGGAGGGCGTGCTTTCCTGGCTTAATTTTAAAACGTTATATCTCAAAAACTAAAACAGCTACTAAATTATTTACAACTACAAAGATGTGTAAAATTTAATGCTTTACAATTTTGTAGTTAAAACAATTTTGCTAGCTATTCTAGTTTTGGAGATACAGCTTGTCAAAAAAGGTAAACTCTTTTTCTCACTATTTTGAGTTTATTTCAAGGACGGTAGGAGCTACAAAAATGGTCCCAACTAGAAAAACGCGCCAAATTACAATCTTAAGCCAAAAAACTTTCAGATGATAACCGCACAACTTGGATTTGTGCAAACGTGGCTGCGAGACGATCAGAATGGCGGCACACTAGCTCCAAGTCTGATTAGTCCCAGATGGAGCTCTTCTGGAAGTGTTGGAATTTCGAAAATCCACGTGTCAAGTGTAGATGTCGAAGAGGATGAGGAGCCACCGACGACTCAGATCTTTTTGTAGTAGATCAAAACTTTTTTGTCTTTTTCGTCATATTTTTTAAGGCATCTCATGTTTTCGGGTCGTTTTTAAAGCTGAAATAAACGTTTTTTTTCAAATCTTCGTGAAAATCGATATTTCTGAAACTATAAAACATCAAGTTAGCTCAAAAATGTGCTCTGGAACCCCTAAAAACCTTTAAAACTGCTAGAATCCCTTAAAAACCACGAAAATCAACGTTTCAAAAAAATTCGGTCAGATGGTTCAGGTGAGTTTGGAATTTTTAATTGGAAAAATCGATATTTTTGAGAAAAATA</canonical>
            <polymorphic>AAGTTGATGACGATTCGAGCTGGGGCTTATCAGGTAACTTTGAAACGAAATATCTCAAAAACCAAGCTAGGAGAATATTTATAACTACCAAAATGTAGAACATAAAATTTTACACAACTTCCTCTTTCCAAAATTCATCTAGCTCTTAAATTAGCCGAGTTACCCCTTTTTGCAAGTCAGAGAGGCGAGAGCGCTCTCGTTTCTCTGCGTCTCCCCCCTCCCTCTCCCTAGTGATGGAGGGCGTGCTTTCCTGGCTTAATTTTAAAACGTTATATCTCAAAAACTAAAACAGCTACTAAATTATTTACAACTACAAAGATGTGTAAAATTTAATGCTTTACAATTTTGTAGTTAAAACAATTTTGCTAGCTATTCTAGTTTTGGAGATACAGCTTGTCAAAAAAGGTAAACTCTTTTTCTCACTATTTTGAGTTTATTTCAAGGACGGTAGGAGCTACAAAAATGGTCCCAACTAGAAAAACGCGCCAAATTACAATCTKAAGCCAAAAAACTTTCAGATGATAACCGCACAACTTGGATTTGTGCAAACGTGGCTGCGAGACGATCAGAATGGCGGCACACTAGCTCCAAGTCTGATTAGTCCCAGATGGAGCTCTTCTGGAAGTGTTGGAATTTCGAAAATCCACGTGTCAAGTGTAGATGTCGAAGAGGATGAGGAGCCACCGACGACTCAGATCTTTTTGTAGTAGATCAAAACTTTTTTGTCTTTTTCGTCATATTTTTTAAGGCATCTCATGTTTTCGGGTCGTTTTTAAAGCTGAAATAAACGTTTTTTTTCAAATCTTCGTGAAAATCGATATTTCTGAAACTATAAAACATCAAGTTAGCTCAAAAATGTGCTCTGGAACCCCTAAAAACCTTTAAAACTGCTAGAATCCCTTAAAAACCACGAAAATCAACGTTTCAAAAAAATTCGGTCAGATGGTTCAGGTGAGTTTGGAATTTTTAATTGGAAAAATCGATATTTTTGAGAAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTTAAG</site>
                <isoschizomers>
                    <enzyme>AflII</enzyme>
                    <enzyme>BfrI</enzyme>
                    <enzyme>BspTI</enzyme>
                    <enzyme>Bst98I</enzyme>
                    <enzyme>MspCI</enzyme>
                    <enzyme>Vha464I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>245 147 146 110 109 68 66 33 29 22 19 6</canonical_bands>
                <polymorphic_bands>392 146 110 109 68 66 33 29 22 19 6</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTATTTTGAGTTTATTTCAAGGAC</pcr_primer_p1>
		<pcr_primer_p2>CTTCGACATCTACACTTGACAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACTATTTTGAGTTTATTTCAAGGACGGTAGGAGCTACAAAAATGGTCCCAACTAGAAAAACGCGCCAAATTACAATCTTAAGCCAAAAAACTTTCAGATGATAACCGCACAACTTGGATTTGTGCAAACGTGGCTGCGAGACGATCAGAATGGCGGCACACTAGCTCCAAGTCTGATTAGTCCCAGATGGAGCTCTTCTGGAAGTGTTGGAATTTCGAAAATCCACGTGTCAAGTGTAGATGTCGAAG</canonical_amplicon>
		<polymorphic_amplicon>ACTATTTTGAGTTTATTTCAAGGACGGTAGGAGCTACAAAAATGGTCCCAACTAGAAAAACGCGCCAAATTACAATCTKAAGCCAAAAAACTTTCAGATGATAACCGCACAACTTGGATTTGTGCAAACGTGGCTGCGAGACGATCAGAATGGCGGCACACTAGCTCCAAGTCTGATTAGTCCCAGATGGAGCTCTTCTGGAAGTGTTGGAATTTCGAAAATCCACGTGTCAAGTGTAGATGTCGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2761</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>407914</contig_pos>
        <strand>+</strand>
        <context>TTTGAGGGRG[A/G]AAATTAATGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAGAGAAATTAGAAGAAAAATAATGAGCAGTTTGAAAACTTTGAGGGAG</left_flank>
        <right_flank>AAATTAATGGAAAAAAACAAAAAAAAAGAAATAGGATGGCAACAGGAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAAAAAATGAAAATTCTAAAAATTTCAAAAAAATCCGAAAATCTTCAAATTCTAAAAATTCTCGAAATTCTGTAAATTCTAAGAATTTCAAAACATTCAAATATCTGGATTTTTCAGAAAATTTAACGTTTCTAGAAGTTTCAGAATTTAAGACTTCATATTCTGAAAATCTCAAAAAATTGAAAATTCTGAAAATTATAAAAATTGAAAATTCTAAAATAATTAGTTTATAGAGGATTTCAAATTTTCTGAAAATTCAAAAATTTTAACCTTAAAATTTCAGATTTTAACCTTAAAATTTCAGATTTTCAGCAAAAAAGAGCAAGAAAAACGGTGGAAAATGAGCGAAAATAGAGTTTTAGGCCCAAAATAATTTATTTTCGTATTTTTGTTTTTCGAAAAAAAAGGATAAATCCGTTGCCTAGCAACCAAAAGGATCAAAACTCTTTAAGAGAAATTAGAAGAAAAATAATGAGCAGTTTGAAAACTTTGAGGGAGAAAATTAATGGAAAAAAACAAAAAAAAAGAAATAGGATGGCAACAGGAATGCATAGAAACCGAAGAAAAACCCGGAAATCGGATATTGAACCTGAAAATAATTGCGAAATTCAGCCTCAAACCCCTTAAAAACCTATAAACCCCCAAAAAATCCATCAAAAACTATGTAAATCAAGATTTTTCGAAATTTTGGTCAGATGGCCTAGTGGTTTTTTGGACACGAAAATTTAGGAGTCTCAACACCAGGGTTCGATTCCACTCGGTGGCAAACCTTTTTTGCTTTTATTTAGAGTATGGTTTAGGAGTTCCGGATGTTTTTTTTTCAGATTTTCAGATTTTCGGAAAATTTTTTGAAAATTCAAAAATTTCGATTTCCAAAAAGTATCTAATATTGAGGTTTTTTAGTTTAAAAAGTTAAAAGTCATCTCTGGAACCCAAGAAAACCCCCAAAAACTCATGAAAAATCATAAAAATCGCGATTTTTTAAAATTTTGGTCAGAT</canonical>
            <polymorphic>CGAAAAAATGAAAATTCTAAAAATTTCAAAAAAATCCGAAAATCTTCAAATTCTAAAAATTCTCGAAATTCTGTAAATTCTAAGAATTTCAAAACATTCAAATATCTGGATTTTTCAGAAAATTTAACGTTTCTAGAAGTTTCAGAATTTAAGACTTCATATTCTGAAAATCTCAAAAAATTGAAAATTCTGAAAATTATAAAAATTGAAAATTCTAAAATAATTAGTTTATAGAGGATTTCAAATTTTCTGAAAATTCAAAAATTTTAACCTTAAAATTTCAGATTTTAACCTTAAAATTTCAGATTTTCAGCAAAAAAGAGCAAGAAAAACGGTGGAAAATGAGCGAAAATAGAGTTTTAGGCCCAAAATAATTTATTTTCGTATTTTTGTTTTTCGAAAAAAAAGGATAAATCCGTTGCCTAGCAACCAAAAGGATCAAAACTCTTTAAGAGAAATTAGAAGAAAAATAATGAGCAGTTTGAAAACTTTGAGGGAGRAAATTAATGGAAAAAAACAAAAAAAAAGAAATAGGATGGCAACAGGAATGCATAGAAACCGAAGAAAAACCCGGAAATCGGATATTGAACCTGAAAATAATTGCGAAATTCAGCCTCAAACCCCTTAAAAACCTATAAACCCCCAAAAAATCCATCAAAAACTATGTAAATCAAGATTTTTCGAAATTTTGGTCAGATGGCCTAGTGGTTTTTTGGACACGAAAATTTAGGAGTCTCAACACCAGGGTTCGATTCCACTCGGTGGCAAACCTTTTTTGCTTTTATTTAGAGTATGGTTTAGGAGTTCCGGATGTTTTTTTTTCAGATTTTCAGATTTTCGGAAAATTTTTTGAAAATTCAAAAATTTCGATTTCCAAAAAGTATCTAATATTGAGGTTTTTTAGTTTAAAAAGTTAAAAGTCATCTCTGGAACCCAAGAAAACCCCCAAAAACTCATGAAAAATCATAAAAATCGCGATTTTTTAAAATTTTGGTCAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAGCGAAAATAGAGTTTTAGG</pcr_primer_p1>
		<pcr_primer_p2>CAGGTTCAATATCCGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATGAGCGAAAATAGAGTTTTAGGCCCAAAATAATTTATTTTCGTATTTTTGTTTTTCGAAAAAAAAGGATAAATCCGTTGCCTAGCAACCAAAAGGATCAAAACTCTTTAAGAGAAATTAGAAGAAAAATAATGAGCAGTTTGAAAACTTTGAGGGAGAAAATTAATGGAAAAAAACAAAAAAAAAGAAATAGGATGGCAACAGGAATGCATAGAAACCGAAGAAAAACCCGGAAATCGGATATTGAACCTG</canonical_amplicon>
		<polymorphic_amplicon>ATGAGCGAAAATAGAGTTTTAGGCCCAAAATAATTTATTTTCGTATTTTTGTTTTTCGAAAAAAAAGGATAAATCCGTTGCCTAGCAACCAAAAGGATCAAAACTCTTTAAGAGAAATTAGAAGAAAAATAATGAGCAGTTTGAAAACTTTGAGGGAGRAAATTAATGGAAAAAAACAAAAAAAAAGAAATAGGATGGCAACAGGAATGCATAGAAACCGAAGAAAAACCCGGAAATCGGATATTGAACCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2762</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>407912</contig_pos>
        <strand>+</strand>
        <context>ACTTTGAGGG[A/G]GRAAATTAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTAAGAGAAATTAGAAGAAAAATAATGAGCAGTTTGAAAACTTTGAGGG</left_flank>
        <right_flank>GAAAATTAATGGAAAAAAACAAAAAAAAAGAAATAGGATGGCAACAGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGAAAAAATGAAAATTCTAAAAATTTCAAAAAAATCCGAAAATCTTCAAATTCTAAAAATTCTCGAAATTCTGTAAATTCTAAGAATTTCAAAACATTCAAATATCTGGATTTTTCAGAAAATTTAACGTTTCTAGAAGTTTCAGAATTTAAGACTTCATATTCTGAAAATCTCAAAAAATTGAAAATTCTGAAAATTATAAAAATTGAAAATTCTAAAATAATTAGTTTATAGAGGATTTCAAATTTTCTGAAAATTCAAAAATTTTAACCTTAAAATTTCAGATTTTAACCTTAAAATTTCAGATTTTCAGCAAAAAAGAGCAAGAAAAACGGTGGAAAATGAGCGAAAATAGAGTTTTAGGCCCAAAATAATTTATTTTCGTATTTTTGTTTTTCGAAAAAAAAGGATAAATCCGTTGCCTAGCAACCAAAAGGATCAAAACTCTTTAAGAGAAATTAGAAGAAAAATAATGAGCAGTTTGAAAACTTTGAGGGAGAAAATTAATGGAAAAAAACAAAAAAAAAGAAATAGGATGGCAACAGGAATGCATAGAAACCGAAGAAAAACCCGGAAATCGGATATTGAACCTGAAAATAATTGCGAAATTCAGCCTCAAACCCCTTAAAAACCTATAAACCCCCAAAAAATCCATCAAAAACTATGTAAATCAAGATTTTTCGAAATTTTGGTCAGATGGCCTAGTGGTTTTTTGGACACGAAAATTTAGGAGTCTCAACACCAGGGTTCGATTCCACTCGGTGGCAAACCTTTTTTGCTTTTATTTAGAGTATGGTTTAGGAGTTCCGGATGTTTTTTTTTCAGATTTTCAGATTTTCGGAAAATTTTTTGAAAATTCAAAAATTTCGATTTCCAAAAAGTATCTAATATTGAGGTTTTTTAGTTTAAAAAGTTAAAAGTCATCTCTGGAACCCAAGAAAACCCCCAAAAACTCATGAAAAATCATAAAAATCGCGATTTTTTAAAATTTTGGTCAG</canonical>
            <polymorphic>ATCGAAAAAATGAAAATTCTAAAAATTTCAAAAAAATCCGAAAATCTTCAAATTCTAAAAATTCTCGAAATTCTGTAAATTCTAAGAATTTCAAAACATTCAAATATCTGGATTTTTCAGAAAATTTAACGTTTCTAGAAGTTTCAGAATTTAAGACTTCATATTCTGAAAATCTCAAAAAATTGAAAATTCTGAAAATTATAAAAATTGAAAATTCTAAAATAATTAGTTTATAGAGGATTTCAAATTTTCTGAAAATTCAAAAATTTTAACCTTAAAATTTCAGATTTTAACCTTAAAATTTCAGATTTTCAGCAAAAAAGAGCAAGAAAAACGGTGGAAAATGAGCGAAAATAGAGTTTTAGGCCCAAAATAATTTATTTTCGTATTTTTGTTTTTCGAAAAAAAAGGATAAATCCGTTGCCTAGCAACCAAAAGGATCAAAACTCTTTAAGAGAAATTAGAAGAAAAATAATGAGCAGTTTGAAAACTTTGAGGGRGAAAATTAATGGAAAAAAACAAAAAAAAAGAAATAGGATGGCAACAGGAATGCATAGAAACCGAAGAAAAACCCGGAAATCGGATATTGAACCTGAAAATAATTGCGAAATTCAGCCTCAAACCCCTTAAAAACCTATAAACCCCCAAAAAATCCATCAAAAACTATGTAAATCAAGATTTTTCGAAATTTTGGTCAGATGGCCTAGTGGTTTTTTGGACACGAAAATTTAGGAGTCTCAACACCAGGGTTCGATTCCACTCGGTGGCAAACCTTTTTTGCTTTTATTTAGAGTATGGTTTAGGAGTTCCGGATGTTTTTTTTTCAGATTTTCAGATTTTCGGAAAATTTTTTGAAAATTCAAAAATTTCGATTTCCAAAAAGTATCTAATATTGAGGTTTTTTAGTTTAAAAAGTTAAAAGTCATCTCTGGAACCCAAGAAAACCCCCAAAAACTCATGAAAAATCATAAAAATCGCGATTTTTTAAAATTTTGGTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAGCGAAAATAGAGTTTTAGG</pcr_primer_p1>
		<pcr_primer_p2>CAGGTTCAATATCCGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATGAGCGAAAATAGAGTTTTAGGCCCAAAATAATTTATTTTCGTATTTTTGTTTTTCGAAAAAAAAGGATAAATCCGTTGCCTAGCAACCAAAAGGATCAAAACTCTTTAAGAGAAATTAGAAGAAAAATAATGAGCAGTTTGAAAACTTTGAGGGAGAAAATTAATGGAAAAAAACAAAAAAAAAGAAATAGGATGGCAACAGGAATGCATAGAAACCGAAGAAAAACCCGGAAATCGGATATTGAACCTG</canonical_amplicon>
		<polymorphic_amplicon>ATGAGCGAAAATAGAGTTTTAGGCCCAAAATAATTTATTTTCGTATTTTTGTTTTTCGAAAAAAAAGGATAAATCCGTTGCCTAGCAACCAAAAGGATCAAAACTCTTTAAGAGAAATTAGAAGAAAAATAATGAGCAGTTTGAAAACTTTGAGGGRGAAAATTAATGGAAAAAAACAAAAAAAAAGAAATAGGATGGCAACAGGAATGCATAGAAACCGAAGAAAAACCCGGAAATCGGATATTGAACCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2763</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>407871</contig_pos>
        <strand>+</strand>
        <context>CTTWAAGAGA[A/C]ATTAGAAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGGATAAATCCGTTGCCTAGCAACCAAAAGGATCAAAACTCTTTAAGAGA</left_flank>
        <right_flank>ATTAGAAGAAAAATAATGAGCAGTTTGAAAACTTTGAGGGAGAAAATTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGAATTTCAAAATTCTTAAAATTCTTAAATTTTCAAAAAATCGAAAAAATGAAAATTCTAAAAATTTCAAAAAAATCCGAAAATCTTCAAATTCTAAAAATTCTCGAAATTCTGTAAATTCTAAGAATTTCAAAACATTCAAATATCTGGATTTTTCAGAAAATTTAACGTTTCTAGAAGTTTCAGAATTTAAGACTTCATATTCTGAAAATCTCAAAAAATTGAAAATTCTGAAAATTATAAAAATTGAAAATTCTAAAATAATTAGTTTATAGAGGATTTCAAATTTTCTGAAAATTCAAAAATTTTAACCTTAAAATTTCAGATTTTAACCTTAAAATTTCAGATTTTCAGCAAAAAAGAGCAAGAAAAACGGTGGAAAATGAGCGAAAATAGAGTTTTAGGCCCAAAATAATTTATTTTCGTATTTTTGTTTTTCGAAAAAAAAGGATAAATCCGTTGCCTAGCAACCAAAAGGATCAAAACTCTTTAAGAGAAATTAGAAGAAAAATAATGAGCAGTTTGAAAACTTTGAGGGAGAAAATTAATGGAAAAAAACAAAAAAAAAGAAATAGGATGGCAACAGGAATGCATAGAAACCGAAGAAAAACCCGGAAATCGGATATTGAACCTGAAAATAATTGCGAAATTCAGCCTCAAACCCCTTAAAAACCTATAAACCCCCAAAAAATCCATCAAAAACTATGTAAATCAAGATTTTTCGAAATTTTGGTCAGATGGCCTAGTGGTTTTTTGGACACGAAAATTTAGGAGTCTCAACACCAGGGTTCGATTCCACTCGGTGGCAAACCTTTTTTGCTTTTATTTAGAGTATGGTTTAGGAGTTCCGGATGTTTTTTTTTCAGATTTTCAGATTTTCGGAAAATTTTTTGAAAATTCAAAAATTTCGATTTCCAAAAAGTATCTAATATTGAGGTTTTTTAGTTTAAAAAGTTAAAAGTCATCTCTGGAACCCAAGAAAACCCCCAAAAACTCAT</canonical>
            <polymorphic>TGAGAATTTCAAAATTCTTAAAATTCTTAAATTTTCAAAAAATCGAAAAAATGAAAATTCTAAAAATTTCAAAAAAATCCGAAAATCTTCAAATTCTAAAAATTCTCGAAATTCTGTAAATTCTAAGAATTTCAAAACATTCAAATATCTGGATTTTTCAGAAAATTTAACGTTTCTAGAAGTTTCAGAATTTAAGACTTCATATTCTGAAAATCTCAAAAAATTGAAAATTCTGAAAATTATAAAAATTGAAAATTCTAAAATAATTAGTTTATAGAGGATTTCAAATTTTCTGAAAATTCAAAAATTTTAACCTTAAAATTTCAGATTTTAACCTTAAAATTTCAGATTTTCAGCAAAAAAGAGCAAGAAAAACGGTGGAAAATGAGCGAAAATAGAGTTTTAGGCCCAAAATAATTTATTTTCGTATTTTTGTTTTTCGAAAAAAAAGGATAAATCCGTTGCCTAGCAACCAAAAGGATCAAAACTCTTTAAGAGAMATTAGAAGAAAAATAATGAGCAGTTTGAAAACTTTGAGGGAGAAAATTAATGGAAAAAAACAAAAAAAAAGAAATAGGATGGCAACAGGAATGCATAGAAACCGAAGAAAAACCCGGAAATCGGATATTGAACCTGAAAATAATTGCGAAATTCAGCCTCAAACCCCTTAAAAACCTATAAACCCCCAAAAAATCCATCAAAAACTATGTAAATCAAGATTTTTCGAAATTTTGGTCAGATGGCCTAGTGGTTTTTTGGACACGAAAATTTAGGAGTCTCAACACCAGGGTTCGATTCCACTCGGTGGCAAACCTTTTTTGCTTTTATTTAGAGTATGGTTTAGGAGTTCCGGATGTTTTTTTTTCAGATTTTCAGATTTTCGGAAAATTTTTTGAAAATTCAAAAATTTCGATTTCCAAAAAGTATCTAATATTGAGGTTTTTTAGTTTAAAAAGTTAAAAGTCATCTCTGGAACCCAAGAAAACCCCCAAAAACTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>120 97 95 84 78 75 45 39 36 33 27 26 25 22 21 14 11 11 11 9 9 9 9 9 9 9 9 8 8 8 8 8 7 7 4</canonical_bands>
                <polymorphic_bands>129 120 97 95 78 75 39 36 33 27 26 25 22 21 14 11 11 11 9 9 9 9 9 9 9 9 8 8 8 8 8 7 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAGCGAAAATAGAGTTTTAGG</pcr_primer_p1>
		<pcr_primer_p2>CAGGTTCAATATCCGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATGAGCGAAAATAGAGTTTTAGGCCCAAAATAATTTATTTTCGTATTTTTGTTTTTCGAAAAAAAAGGATAAATCCGTTGCCTAGCAACCAAAAGGATCAAAACTCTTTAAGAGAAATTAGAAGAAAAATAATGAGCAGTTTGAAAACTTTGAGGGAGAAAATTAATGGAAAAAAACAAAAAAAAAGAAATAGGATGGCAACAGGAATGCATAGAAACCGAAGAAAAACCCGGAAATCGGATATTGAACCTG</canonical_amplicon>
		<polymorphic_amplicon>ATGAGCGAAAATAGAGTTTTAGGCCCAAAATAATTTATTTTCGTATTTTTGTTTTTCGAAAAAAAAGGATAAATCCGTTGCCTAGCAACCAAAAGGATCAAAACTCTTTAAGAGAMATTAGAAGAAAAATAATGAGCAGTTTGAAAACTTTGAGGGAGAAAATTAATGGAAAAAAACAAAAAAAAAGAAATAGGATGGCAACAGGAATGCATAGAAACCGAAGAAAAACCCGGAAATCGGATATTGAACCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2764</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>407864</contig_pos>
        <strand>+</strand>
        <context>CAAAACTCTT[A/T]AAGAGAMATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAAAAAGGATAAATCCGTTGCCTAGCAACCAAAAGGATCAAAACTCTT</left_flank>
        <right_flank>AAGAGAAATTAGAAGAAAAATAATGAGCAGTTTGAAAACTTTGAGGGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAATCTGAGAATTTCAAAATTCTTAAAATTCTTAAATTTTCAAAAAATCGAAAAAATGAAAATTCTAAAAATTTCAAAAAAATCCGAAAATCTTCAAATTCTAAAAATTCTCGAAATTCTGTAAATTCTAAGAATTTCAAAACATTCAAATATCTGGATTTTTCAGAAAATTTAACGTTTCTAGAAGTTTCAGAATTTAAGACTTCATATTCTGAAAATCTCAAAAAATTGAAAATTCTGAAAATTATAAAAATTGAAAATTCTAAAATAATTAGTTTATAGAGGATTTCAAATTTTCTGAAAATTCAAAAATTTTAACCTTAAAATTTCAGATTTTAACCTTAAAATTTCAGATTTTCAGCAAAAAAGAGCAAGAAAAACGGTGGAAAATGAGCGAAAATAGAGTTTTAGGCCCAAAATAATTTATTTTCGTATTTTTGTTTTTCGAAAAAAAAGGATAAATCCGTTGCCTAGCAACCAAAAGGATCAAAACTCTTTAAGAGAAATTAGAAGAAAAATAATGAGCAGTTTGAAAACTTTGAGGGAGAAAATTAATGGAAAAAAACAAAAAAAAAGAAATAGGATGGCAACAGGAATGCATAGAAACCGAAGAAAAACCCGGAAATCGGATATTGAACCTGAAAATAATTGCGAAATTCAGCCTCAAACCCCTTAAAAACCTATAAACCCCCAAAAAATCCATCAAAAACTATGTAAATCAAGATTTTTCGAAATTTTGGTCAGATGGCCTAGTGGTTTTTTGGACACGAAAATTTAGGAGTCTCAACACCAGGGTTCGATTCCACTCGGTGGCAAACCTTTTTTGCTTTTATTTAGAGTATGGTTTAGGAGTTCCGGATGTTTTTTTTTCAGATTTTCAGATTTTCGGAAAATTTTTTGAAAATTCAAAAATTTCGATTTCCAAAAAGTATCTAATATTGAGGTTTTTTAGTTTAAAAAGTTAAAAGTCATCTCTGGAACCCAAGAAAACCCCCAAA</canonical>
            <polymorphic>CTGAATCTGAGAATTTCAAAATTCTTAAAATTCTTAAATTTTCAAAAAATCGAAAAAATGAAAATTCTAAAAATTTCAAAAAAATCCGAAAATCTTCAAATTCTAAAAATTCTCGAAATTCTGTAAATTCTAAGAATTTCAAAACATTCAAATATCTGGATTTTTCAGAAAATTTAACGTTTCTAGAAGTTTCAGAATTTAAGACTTCATATTCTGAAAATCTCAAAAAATTGAAAATTCTGAAAATTATAAAAATTGAAAATTCTAAAATAATTAGTTTATAGAGGATTTCAAATTTTCTGAAAATTCAAAAATTTTAACCTTAAAATTTCAGATTTTAACCTTAAAATTTCAGATTTTCAGCAAAAAAGAGCAAGAAAAACGGTGGAAAATGAGCGAAAATAGAGTTTTAGGCCCAAAATAATTTATTTTCGTATTTTTGTTTTTCGAAAAAAAAGGATAAATCCGTTGCCTAGCAACCAAAAGGATCAAAACTCTTWAAGAGAAATTAGAAGAAAAATAATGAGCAGTTTGAAAACTTTGAGGGAGAAAATTAATGGAAAAAAACAAAAAAAAAGAAATAGGATGGCAACAGGAATGCATAGAAACCGAAGAAAAACCCGGAAATCGGATATTGAACCTGAAAATAATTGCGAAATTCAGCCTCAAACCCCTTAAAAACCTATAAACCCCCAAAAAATCCATCAAAAACTATGTAAATCAAGATTTTTCGAAATTTTGGTCAGATGGCCTAGTGGTTTTTTGGACACGAAAATTTAGGAGTCTCAACACCAGGGTTCGATTCCACTCGGTGGCAAACCTTTTTTGCTTTTATTTAGAGTATGGTTTAGGAGTTCCGGATGTTTTTTTTTCAGATTTTCAGATTTTCGGAAAATTTTTTGAAAATTCAAAAATTTCGATTTCCAAAAAGTATCTAATATTGAGGTTTTTTAGTTTAAAAAGTTAAAAGTCATCTCTGGAACCCAAGAAAACCCCCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>281 155 140 121 118 55 36 25 25 15 9 8 6 6</canonical_bands>
                <polymorphic_bands>281 210 140 121 118 36 25 25 15 9 8 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAGCGAAAATAGAGTTTTAGG</pcr_primer_p1>
		<pcr_primer_p2>CAGGTTCAATATCCGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATGAGCGAAAATAGAGTTTTAGGCCCAAAATAATTTATTTTCGTATTTTTGTTTTTCGAAAAAAAAGGATAAATCCGTTGCCTAGCAACCAAAAGGATCAAAACTCTTTAAGAGAAATTAGAAGAAAAATAATGAGCAGTTTGAAAACTTTGAGGGAGAAAATTAATGGAAAAAAACAAAAAAAAAGAAATAGGATGGCAACAGGAATGCATAGAAACCGAAGAAAAACCCGGAAATCGGATATTGAACCTG</canonical_amplicon>
		<polymorphic_amplicon>ATGAGCGAAAATAGAGTTTTAGGCCCAAAATAATTTATTTTCGTATTTTTGTTTTTCGAAAAAAAAGGATAAATCCGTTGCCTAGCAACCAAAAGGATCAAAACTCTTWAAGAGAAATTAGAAGAAAAATAATGAGCAGTTTGAAAACTTTGAGGGAGAAAATTAATGGAAAAAAACAAAAAAAAAGAAATAGGATGGCAACAGGAATGCATAGAAACCGAAGAAAAACCCGGAAATCGGATATTGAACCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2765</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>407790</contig_pos>
        <strand>+</strand>
        <context>CCAAAATAAT[A/T]TATTTTCGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAAAAACGGTGGAAAATGAGCGAAAATAGAGTTTTAGGCCCAAAATAAT</left_flank>
        <right_flank>TATTTTCGTATTTTTGTTTTTCGAAAAAAAAGGATAAATCCGTTGCCTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAAAAAATTGAAAATTCTGTAAATTTCAAAAAAAAAGAAAATTCAGGAAATCCTGAAAATTTCTTTCAAATCTGAATCTGAGAATTTCAAAATTCTTAAAATTCTTAAATTTTCAAAAAATCGAAAAAATGAAAATTCTAAAAATTTCAAAAAAATCCGAAAATCTTCAAATTCTAAAAATTCTCGAAATTCTGTAAATTCTAAGAATTTCAAAACATTCAAATATCTGGATTTTTCAGAAAATTTAACGTTTCTAGAAGTTTCAGAATTTAAGACTTCATATTCTGAAAATCTCAAAAAATTGAAAATTCTGAAAATTATAAAAATTGAAAATTCTAAAATAATTAGTTTATAGAGGATTTCAAATTTTCTGAAAATTCAAAAATTTTAACCTTAAAATTTCAGATTTTAACCTTAAAATTTCAGATTTTCAGCAAAAAAGAGCAAGAAAAACGGTGGAAAATGAGCGAAAATAGAGTTTTAGGCCCAAAATAATTTATTTTCGTATTTTTGTTTTTCGAAAAAAAAGGATAAATCCGTTGCCTAGCAACCAAAAGGATCAAAACTCTTTAAGAGAAATTAGAAGAAAAATAATGAGCAGTTTGAAAACTTTGAGGGAGAAAATTAATGGAAAAAAACAAAAAAAAAGAAATAGGATGGCAACAGGAATGCATAGAAACCGAAGAAAAACCCGGAAATCGGATATTGAACCTGAAAATAATTGCGAAATTCAGCCTCAAACCCCTTAAAAACCTATAAACCCCCAAAAAATCCATCAAAAACTATGTAAATCAAGATTTTTCGAAATTTTGGTCAGATGGCCTAGTGGTTTTTTGGACACGAAAATTTAGGAGTCTCAACACCAGGGTTCGATTCCACTCGGTGGCAAACCTTTTTTGCTTTTATTTAGAGTATGGTTTAGGAGTTCCGGATGTTTTTTTTTCAGATTTTCAGATTTTCGGAAAATTTTTTGAAAATTCAAAAATTTCGATTTCCA</canonical>
            <polymorphic>GAAAAAAAAATTGAAAATTCTGTAAATTTCAAAAAAAAAGAAAATTCAGGAAATCCTGAAAATTTCTTTCAAATCTGAATCTGAGAATTTCAAAATTCTTAAAATTCTTAAATTTTCAAAAAATCGAAAAAATGAAAATTCTAAAAATTTCAAAAAAATCCGAAAATCTTCAAATTCTAAAAATTCTCGAAATTCTGTAAATTCTAAGAATTTCAAAACATTCAAATATCTGGATTTTTCAGAAAATTTAACGTTTCTAGAAGTTTCAGAATTTAAGACTTCATATTCTGAAAATCTCAAAAAATTGAAAATTCTGAAAATTATAAAAATTGAAAATTCTAAAATAATTAGTTTATAGAGGATTTCAAATTTTCTGAAAATTCAAAAATTTTAACCTTAAAATTTCAGATTTTAACCTTAAAATTTCAGATTTTCAGCAAAAAAGAGCAAGAAAAACGGTGGAAAATGAGCGAAAATAGAGTTTTAGGCCCAAAATAATWTATTTTCGTATTTTTGTTTTTCGAAAAAAAAGGATAAATCCGTTGCCTAGCAACCAAAAGGATCAAAACTCTTTAAGAGAAATTAGAAGAAAAATAATGAGCAGTTTGAAAACTTTGAGGGAGAAAATTAATGGAAAAAAACAAAAAAAAAGAAATAGGATGGCAACAGGAATGCATAGAAACCGAAGAAAAACCCGGAAATCGGATATTGAACCTGAAAATAATTGCGAAATTCAGCCTCAAACCCCTTAAAAACCTATAAACCCCCAAAAAATCCATCAAAAACTATGTAAATCAAGATTTTTCGAAATTTTGGTCAGATGGCCTAGTGGTTTTTTGGACACGAAAATTTAGGAGTCTCAACACCAGGGTTCGATTCCACTCGGTGGCAAACCTTTTTTGCTTTTATTTAGAGTATGGTTTAGGAGTTCCGGATGTTTTTTTTTCAGATTTTCAGATTTTCGGAAAATTTTTTGAAAATTCAAAAATTTCGATTTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>120 97 84 78 75 45 39 36 33 27 26 25 25 22 21 18 18 14 14 11 11 11 9 9 9 9 9 9 9 9 9 8 8 8 8 8 8 7 7 7</canonical_bands>
                <polymorphic_bands>159 120 97 78 45 39 36 33 27 26 25 25 22 21 18 18 14 14 11 11 11 9 9 9 9 9 9 9 9 9 8 8 8 8 8 8 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTTCAAATCTGAATCTGAG</pcr_primer_p1>
		<pcr_primer_p2>TTTGATCCTTTTGGTTGCTA</pcr_primer_p2>
		<pcr_amplicon_size>505</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTTCAAATCTGAATCTGAGAATTTCAAAATTCTTAAAATTCTTAAATTTTCAAAAAATCGAAAAAATGAAAATTCTAAAAATTTCAAAAAAATCCGAAAATCTTCAAATTCTAAAAATTCTCGAAATTCTGTAAATTCTAAGAATTTCAAAACATTCAAATATCTGGATTTTTCAGAAAATTTAACGTTTCTAGAAGTTTCAGAATTTAAGACTTCATATTCTGAAAATCTCAAAAAATTGAAAATTCTGAAAATTATAAAAATTGAAAATTCTAAAATAATTAGTTTATAGAGGATTTCAAATTTTCTGAAAATTCAAAAATTTTAACCTTAAAATTTCAGATTTTAACCTTAAAATTTCAGATTTTCAGCAAAAAAGAGCAAGAAAAACGGTGGAAAATGAGCGAAAATAGAGTTTTAGGCCCAAAATAATTTATTTTCGTATTTTTGTTTTTCGAAAAAAAAGGATAAATCCGTTGCCTAGCAACCAAAAGGATCAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTTCAAATCTGAATCTGAGAATTTCAAAATTCTTAAAATTCTTAAATTTTCAAAAAATCGAAAAAATGAAAATTCTAAAAATTTCAAAAAAATCCGAAAATCTTCAAATTCTAAAAATTCTCGAAATTCTGTAAATTCTAAGAATTTCAAAACATTCAAATATCTGGATTTTTCAGAAAATTTAACGTTTCTAGAAGTTTCAGAATTTAAGACTTCATATTCTGAAAATCTCAAAAAATTGAAAATTCTGAAAATTATAAAAATTGAAAATTCTAAAATAATTAGTTTATAGAGGATTTCAAATTTTCTGAAAATTCAAAAATTTTAACCTTAAAATTTCAGATTTTAACCTTAAAATTTCAGATTTTCAGCAAAAAAGAGCAAGAAAAACGGTGGAAAATGAGCGAAAATAGAGTTTTAGGCCCAAAATAATWTATTTTCGTATTTTTGTTTTTCGAAAAAAAAGGATAAATCCGTTGCCTAGCAACCAAAAGGATCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2766</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>452256</contig_pos>
        <strand></strand>
        <context>TTTTTCCATT[A/G]GGAGACGATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTCGAAGACCGAAAAATAAAAAGAAAATACGGGCGGTCGTTTTTCCATT</left_flank>
        <right_flank>GGAGACGATAACTGATGACGACAAGGCAAATTTTTGCAACATAAGTTTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCGGATTCCCGCCAGAGAACGCCAAAAGAGCGCTGGAGCGCGTTTGCACCGCCCCTACCCGAAAAAAGCGAATAAAAAGCGATAAAAAGTTAATATGACATAAAACTGTTTACGATGGCTGCCTTTTAAACCCCAATTCTTGTCAGGCTCCGCCCATTTTGGGGCCAAACCAGGAATTCTCTTATTTATCTCGCCATTATATCAAAACCCAATGATATATTCTAACTGTTTCTCAGGGACGTTTTACGTTTTACCTTACCTATCCGTCGTTTCTCTAGACCCTCTCGATTTCCCATACTATTTCCTTTTTCCTTTTTCGAAAATGTTGCACTTTTCGTATGCGAAAAAACCGTTAAACCGCCCATCTCGGGGGTAGAAGATGGCGAAGACCCGTGTAGATATTCTGTTATTGATGATTTATCTGATCGAAACGGTCGGAGGGAATGTTCTCGAAGACCGAAAAATAAAAAGAAAATACGGGCGGTCGTTTTTCCATTAGGAGACGATAACTGATGACGACAAGGCAAATTTTTGCAACATAAGTTTTCATGAAAATCGGGGGTGGAGCGCGCCAACTTTAAAGGCGCATATCTCAAGAACGATAGAAGCTATCAAAATGTTGTCAACTCCAAAATCGCTCAGCATTAAATTCGACATATTTTTGTAGTTTTGCCCTTCCTGCTAGCTACCGAGGTTTTGAAGATATGCGCCTTTAAAGTTAACGCGTGCAAATGTGGGATGGGTGAGACGCTGGCGCCGCGCAAAAGTTTAAAGGCGCGTATCTCAAGAACGATAAAAGCAATTAAATTTTTGTTAATTACGAAATTGCTCAGCATAAAATTTGGCATACTTTTATAATTTACCTCTTTTTGCTAGCTACCGTAGTTTTTGAGATATGCACCTTTAAAGCTAGCTCACCCTTGTCTACCGCTTCCTCTGTCACATGAAAGGGGGCGGCGGGTGGTTAACTTTAAAGACGCATATCTCTAAAACGACTG</canonical>
            <polymorphic>ATTCGGATTCCCGCCAGAGAACGCCAAAAGAGCGCTGGAGCGCGTTTGCACCGCCCCTACCCGAAAAAAGCGAATAAAAAGCGATAAAAAGTTAATATGACATAAAACTGTTTACGATGGCTGCCTTTTAAACCCCAATTCTTGTCAGGCTCCGCCCATTTTGGGGCCAAACCAGGAATTCTCTTATTTATCTCGCCATTATATCAAAACCCAATGATATATTCTAACTGTTTCTCAGGGACGTTTTACGTTTTACCTTACCTATCCGTCGTTTCTCTAGACCCTCTCGATTTCCCATACTATTTCCTTTTTCCTTTTTCGAAAATGTTGCACTTTTCGTATGCGAAAAAACCGTTAAACCGCCCATCTCGGGGGTAGAAGATGGCGAAGACCCGTGTAGATATTCTGTTATTGATGATTTATCTGATCGAAACGGTCGGAGGGAATGTTCTCGAAGACCGAAAAATAAAAAGAAAATACGGGCGGTCGTTTTTCCATTRGGAGACGATAACTGATGACGACAAGGCAAATTTTTGCAACATAAGTTTTCATGAAAATCGGGGGTGGAGCGCGCCAACTTTAAAGGCGCATATCTCAAGAACGATAGAAGCTATCAAAATGTTGTCAACTCCAAAATCGCTCAGCATTAAATTCGACATATTTTTGTAGTTTTGCCCTTCCTGCTAGCTACCGAGGTTTTGAAGATATGCGCCTTTAAAGTTAACGCGTGCAAATGTGGGATGGGTGAGACGCTGGCGCCGCGCAAAAGTTTAAAGGCGCGTATCTCAAGAACGATAAAAGCAATTAAATTTTTGTTAATTACGAAATTGCTCAGCATAAAATTTGGCATACTTTTATAATTTACCTCTTTTTGCTAGCTACCGTAGTTTTTGAGATATGCACCTTTAAAGCTAGCTCACCCTTGTCTACCGCTTCCTCTGTCACATGAAAGGGGGCGGCGGGTGGTTAACTTTAAAGACGCATATCTCTAAAACGACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGAAGACCGAAAAATAAA</pcr_primer_p1>
		<pcr_primer_p2>TGTAACTGATTTCGGTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>705</pcr_amplicon_size>
		<canonical_amplicon>CTCGAAGACCGAAAAATAAAAAGAAAATACGGGCGGTCGTTTTTCCATTAGGAGACGATAACTGATGACG</canonical_amplicon>
		<polymorphic_amplicon>CTCGAAGACCGAAAAATAAAAAGAAAATACGGGCGGTCGTTTTTCCATTRGGAGACGATAACTGATGACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2768</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>453563</contig_pos>
        <strand>+</strand>
        <context>ATGGTTTTTA[A/G]AGCTTGGAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTATGTCGTATTGTGCCTGTGAATTTTGAAGGGTTAGCGATGGTTTTTA</left_flank>
        <right_flank>AGCTTGGAAGCAGGAAAAATAGATTTAAAATAGGTTGATTTTAGTATAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTAGAAAAATTAAGGCATAGAAAGCTCAAAAAGACCTGAGATTTTGGGAAAAATTAGAAAAATTAAAAAAAAAATTAGAACCGTATTAGTAGGATGGGAAGTTAAAAATGACTAGAAAAAAGGGGGCGTGGCCTAGATTTCCACCTGAACATATTCTTTTCGATGGCGATTCGATTCTTCGGCTTTTTGCATTTCGACAATTTCCGAGAATATCTCAGTTAGCGGCTCAAACGACGGAGCCGGAATTTGTGGACGTCGGGCGGCGGTCTGGAAATTGGAATTTCAAAAAATTTCAAAAAAAAAAAAAAGGGCTGGCCTATATTTGTTGGTCTTACCAAAAGTGGTTGTCTTAGAAGCGAATGCTGACTTGGCGTGCTCAAATTGATGGGTCCGGGCGGAAGAACGTCCTCGACACGCGCGTAAATGTACTCGTTCATCAGCGAGTCGTATGTCGTATTGTGCCTGTGAATTTTGAAGGGTTAGCGATGGTTTTTAAAGCTTGGAAGCAGGAAAAATAGATTTAAAATAGGTTGATTTTAGTATAGAGCTAGTTTTTGTAAGAGTTTCTACAGGTAGAAGGGAGATGGAAGGTGTTCATGGGGTTTAGGGGCGGGGTCTTTAAAGGCGCATAACTAAAAAACTAGGATAGTTACTGTAAATTGTTTAATTATGAAAATGTGTAAACATTTATGTTGAGCAGTTTTGTAGTTAATAACTTTTTGATAGCTAGTCTAGTTTTTGAGATATTCACCTTTGAAGTTAACGCGCCACCCACCGAAGAGGGAAGAGTAGGGGGGGGGGGGGGTGGGGTAGGCCAACTTTAAAGGCGCATATCTCCAAAAACGTGAGAGGTAAGTAAAAGTAATTAACTAGTAAAAAGTGTAAAATTTTATTTTAAACAGTTTCATAGTTAACAAAAATTAGCTAGCTTTTTTCGTTCTTGAGATATACGCCTATAAAATGGACACATCTTAGCGCACCAGCGACTCGAAGGAG</canonical>
            <polymorphic>AATTTTAGAAAAATTAAGGCATAGAAAGCTCAAAAAGACCTGAGATTTTGGGAAAAATTAGAAAAATTAAAAAAAAAATTAGAACCGTATTAGTAGGATGGGAAGTTAAAAATGACTAGAAAAAAGGGGGCGTGGCCTAGATTTCCACCTGAACATATTCTTTTCGATGGCGATTCGATTCTTCGGCTTTTTGCATTTCGACAATTTCCGAGAATATCTCAGTTAGCGGCTCAAACGACGGAGCCGGAATTTGTGGACGTCGGGCGGCGGTCTGGAAATTGGAATTTCAAAAAATTTCAAAAAAAAAAAAAAGGGCTGGCCTATATTTGTTGGTCTTACCAAAAGTGGTTGTCTTAGAAGCGAATGCTGACTTGGCGTGCTCAAATTGATGGGTCCGGGCGGAAGAACGTCCTCGACACGCGCGTAAATGTACTCGTTCATCAGCGAGTCGTATGTCGTATTGTGCCTGTGAATTTTGAAGGGTTAGCGATGGTTTTTARAGCTTGGAAGCAGGAAAAATAGATTTAAAATAGGTTGATTTTAGTATAGAGCTAGTTTTTGTAAGAGTTTCTACAGGTAGAAGGGAGATGGAAGGTGTTCATGGGGTTTAGGGGCGGGGTCTTTAAAGGCGCATAACTAAAAAACTAGGATAGTTACTGTAAATTGTTTAATTATGAAAATGTGTAAACATTTATGTTGAGCAGTTTTGTAGTTAATAACTTTTTGATAGCTAGTCTAGTTTTTGAGATATTCACCTTTGAAGTTAACGCGCCACCCACCGAAGAGGGAAGAGTAGGGGGGGGGGGGGGTGGGGTAGGCCAACTTTAAAGGCGCATATCTCCAAAAACGTGAGAGGTAAGTAAAAGTAATTAACTAGTAAAAAGTGTAAAATTTTATTTTAAACAGTTTCATAGTTAACAAAAATTAGCTAGCTTTTTTCGTTCTTGAGATATACGCCTATAAAATGGACACATCTTAGCGCACCAGCGACTCGAAGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>498 202 100 98 74 28</canonical_bands>
                <polymorphic_bands>526 202 100 98 74</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>391 98 85 61 53 51 45 45 45 39 29 28 16 14</canonical_bands>
                <polymorphic_bands>419 98 85 61 53 51 45 45 45 39 29 16 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACCAAAAGTGGTTGTCTTAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCCATCTCCCTTCTACCTGT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TACCAAAAGTGGTTGTCTTAGAAGCGAATGCTGACTTGGCGTGCTCAAATTGATGGGTCCGGGCGGAAGAACGTCCTCGACACGCGCGTAAATGTACTCGTTCATCAGCGAGTCGTATGTCGTATTGTGCCTGTGAATTTTGAAGGGTTAGCGATGGTTTTTAAAGCTTGGAAGCAGGAAAAATAGATTTAAAATAGGTTGATTTTAGTATAGAGCTAGTTTTTGTAAGAGTTTCTACAGGTAGAAGGGAGATGGA</canonical_amplicon>
		<polymorphic_amplicon>TACCAAAAGTGGTTGTCTTAGAAGCGAATGCTGACTTGGCGTGCTCAAATTGATGGGTCCGGGCGGAAGAACGTCCTCGACACGCGCGTAAATGTACTCGTTCATCAGCGAGTCGTATGTCGTATTGTGCCTGTGAATTTTGAAGGGTTAGCGATGGTTTTTARAGCTTGGAAGCAGGAAAAATAGATTTAAAATAGGTTGATTTTAGTATAGAGCTAGTTTTTGTAAGAGTTTCTACAGGTAGAAGGGAGATGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2769</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>453385</contig_pos>
        <strand>+</strand>
        <context>AGGGCTGGCC[C/T]ATATTTGTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGGAAATTGGAATTTCAAAAAATTTCAAAAAAAAAAAAAAGGGCTGGCC</left_flank>
        <right_flank>ATATTTGTTGGTCTTACCAAAAGTGGTTGTCTTAGAAGCGAATGCTGACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATTTCAAACCGAAATCAGTTACAGATAAATTATGAAAACTCTAACATTCAAGAACTTTTTTTTTTGAAAATTAGGCAACAATAATAAAAATTATTTGAACAATTTATTTAGCACCAGAAACAAAAAAAAAACGCAAAGAAAGGCAAGAAAATCATATGGAGAACAGAATTTTTGGAATTTTAGAAAAATTAAGGCATAGAAAGCTCAAAAAGACCTGAGATTTTGGGAAAAATTAGAAAAATTAAAAAAAAAATTAGAACCGTATTAGTAGGATGGGAAGTTAAAAATGACTAGAAAAAAGGGGGCGTGGCCTAGATTTCCACCTGAACATATTCTTTTCGATGGCGATTCGATTCTTCGGCTTTTTGCATTTCGACAATTTCCGAGAATATCTCAGTTAGCGGCTCAAACGACGGAGCCGGAATTTGTGGACGTCGGGCGGCGGTCTGGAAATTGGAATTTCAAAAAATTTCAAAAAAAAAAAAAAGGGCTGGCCTATATTTGTTGGTCTTACCAAAAGTGGTTGTCTTAGAAGCGAATGCTGACTTGGCGTGCTCAAATTGATGGGTCCGGGCGGAAGAACGTCCTCGACACGCGCGTAAATGTACTCGTTCATCAGCGAGTCGTATGTCGTATTGTGCCTGTGAATTTTGAAGGGTTAGCGATGGTTTTTAAAGCTTGGAAGCAGGAAAAATAGATTTAAAATAGGTTGATTTTAGTATAGAGCTAGTTTTTGTAAGAGTTTCTACAGGTAGAAGGGAGATGGAAGGTGTTCATGGGGTTTAGGGGCGGGGTCTTTAAAGGCGCATAACTAAAAAACTAGGATAGTTACTGTAAATTGTTTAATTATGAAAATGTGTAAACATTTATGTTGAGCAGTTTTGTAGTTAATAACTTTTTGATAGCTAGTCTAGTTTTTGAGATATTCACCTTTGAAGTTAACGCGCCACCCACCGAAGAGGGAAGAGTAGGGGGGGGGGGGGGTGGGGTAGGCCAA</canonical>
            <polymorphic>AAAATTTCAAACCGAAATCAGTTACAGATAAATTATGAAAACTCTAACATTCAAGAACTTTTTTTTTTGAAAATTAGGCAACAATAATAAAAATTATTTGAACAATTTATTTAGCACCAGAAACAAAAAAAAAACGCAAAGAAAGGCAAGAAAATCATATGGAGAACAGAATTTTTGGAATTTTAGAAAAATTAAGGCATAGAAAGCTCAAAAAGACCTGAGATTTTGGGAAAAATTAGAAAAATTAAAAAAAAAATTAGAACCGTATTAGTAGGATGGGAAGTTAAAAATGACTAGAAAAAAGGGGGCGTGGCCTAGATTTCCACCTGAACATATTCTTTTCGATGGCGATTCGATTCTTCGGCTTTTTGCATTTCGACAATTTCCGAGAATATCTCAGTTAGCGGCTCAAACGACGGAGCCGGAATTTGTGGACGTCGGGCGGCGGTCTGGAAATTGGAATTTCAAAAAATTTCAAAAAAAAAAAAAAGGGCTGGCCYATATTTGTTGGTCTTACCAAAAGTGGTTGTCTTAGAAGCGAATGCTGACTTGGCGTGCTCAAATTGATGGGTCCGGGCGGAAGAACGTCCTCGACACGCGCGTAAATGTACTCGTTCATCAGCGAGTCGTATGTCGTATTGTGCCTGTGAATTTTGAAGGGTTAGCGATGGTTTTTAAAGCTTGGAAGCAGGAAAAATAGATTTAAAATAGGTTGATTTTAGTATAGAGCTAGTTTTTGTAAGAGTTTCTACAGGTAGAAGGGAGATGGAAGGTGTTCATGGGGTTTAGGGGCGGGGTCTTTAAAGGCGCATAACTAAAAAACTAGGATAGTTACTGTAAATTGTTTAATTATGAAAATGTGTAAACATTTATGTTGAGCAGTTTTGTAGTTAATAACTTTTTGATAGCTAGTCTAGTTTTTGAGATATTCACCTTTGAAGTTAACGCGCCACCCACCGAAGAGGGAAGAGTAGGGGGGGGGGGGGGTGGGGTAGGCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>499 313 184 4</canonical_bands>
                <polymorphic_bands>683 313 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTAGATTTCCACCTGAACATA</pcr_primer_p1>
		<pcr_primer_p2>AAGTCAGCATTCGCTTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>CCTAGATTTCCACCTGAACATATTCTTTTCGATGGCGATTCGATTCTTCGGCTTTTTGCATTTCGACAATTTCCGAGAATATCTCAGTTAGCGGCTCAAACGACGGAGCCGGAATTTGTGGACGTCGGGCGGCGGTCTGGAAATTGGAATTTCAAAAAATTTCAAAAAAAAAAAAAAGGGCTGGCCTATATTTGTTGGTCTTACCAAAAGTGGTTGTCTTAGAAGCGAATGCTGACTT</canonical_amplicon>
		<polymorphic_amplicon>CCTAGATTTCCACCTGAACATATTCTTTTCGATGGCGATTCGATTCTTCGGCTTTTTGCATTTCGACAATTTCCGAGAATATCTCAGTTAGCGGCTCAAACGACGGAGCCGGAATTTGTGGACGTCGGGCGGCGGTCTGGAAATTGGAATTTCAAAAAATTTCAAAAAAAAAAAAAAGGGCTGGCCYATATTTGTTGGTCTTACCAAAAGTGGTTGTCTTAGAAGCGAATGCTGACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2808</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>490577</contig_pos>
        <strand>+</strand>
        <context>GAAAATCAAA[A/G]GAATACCGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAACATCATTCCAATAAGAGAAATTGATGAATGAATCATTGAAAATCAAA</left_flank>
        <right_flank>GAATACCGCAAAATTTATGGTTTTCATAATTTGGAGAAGTGGAAGGAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAATATGGAGAAGAAAATGAGATTTCGCTTCAAAAATGTTAGAAAAAGGGTTTCCAAGATGTTTAGGACATTTTTGAACTAGATTCATTTTGTTTGGACATGGTCCATCCAAAATCTGGGGAAGGCTGAATCTGGAGAAGACCGAATATGGAGAAGAAGAAGAGTTTTTTCTTCAAAAATTTTTGGGAAAAGATTCCCAAAATATTCCAGACATTTTTGAAGTAGATTTGATAAGTTTAGGTATGGTCCATCCAAAATCTGGAGAAGACTAGATTCGGAGAAGACCAAATTTGGAGAAGAAGAATACATTTTTCTTATCCATATTTTTTTCTCACTTGATCTACTAGTTTTTCTTCTAATTTCGACCTTTTCTGTCACTTTTTTTTTCTTCTTCTTCTTCTTTTTCTATATTCAGAGAAGGAAAAAGAAGAAGAAGAAGACCTTGATGAACATCATTCCAATAAGAGAAATTGATGAATGAATCATTGAAAATCAAAAGAATACCGCAAAATTTATGGTTTTCATAATTTGGAGAAGTGGAAGGAAAAGAAGAAGAAGGATTCAGAATCCCCGTTCAAAAAATCTGGTTCTGACGTTTTTAATATTCCTAGATTAGGCACAATTTTCTTATTTCCATAGCGTCAAAACAAACCAAAAAAATAATTTTCTTCTCCAGATTTGGTCTTCTCCAAATCTGGTCTTCTCCAGATTTTGGATGGACCAATTCCAAAATTTGAAAATCTAGTTCAAAAATGTCCTAAATATCATGGAAGTCTTTTTTCCAATTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTCCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTAGTTCAAAAATGTCCTAAATATCTTGGAAGTTTTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAGGTCTTCCCCAGATTCTGGATGAACAAATTCAAAATCAACATTTCTC</canonical>
            <polymorphic>CTGAATATGGAGAAGAAAATGAGATTTCGCTTCAAAAATGTTAGAAAAAGGGTTTCCAAGATGTTTAGGACATTTTTGAACTAGATTCATTTTGTTTGGACATGGTCCATCCAAAATCTGGGGAAGGCTGAATCTGGAGAAGACCGAATATGGAGAAGAAGAAGAGTTTTTTCTTCAAAAATTTTTGGGAAAAGATTCCCAAAATATTCCAGACATTTTTGAAGTAGATTTGATAAGTTTAGGTATGGTCCATCCAAAATCTGGAGAAGACTAGATTCGGAGAAGACCAAATTTGGAGAAGAAGAATACATTTTTCTTATCCATATTTTTTTCTCACTTGATCTACTAGTTTTTCTTCTAATTTCGACCTTTTCTGTCACTTTTTTTTTCTTCTTCTTCTTCTTTTTCTATATTCAGAGAAGGAAAAAGAAGAAGAAGAAGACCTTGATGAACATCATTCCAATAAGAGAAATTGATGAATGAATCATTGAAAATCAAARGAATACCGCAAAATTTATGGTTTTCATAATTTGGAGAAGTGGAAGGAAAAGAAGAAGAAGGATTCAGAATCCCCGTTCAAAAAATCTGGTTCTGACGTTTTTAATATTCCTAGATTAGGCACAATTTTCTTATTTCCATAGCGTCAAAACAAACCAAAAAAATAATTTTCTTCTCCAGATTTGGTCTTCTCCAAATCTGGTCTTCTCCAGATTTTGGATGGACCAATTCCAAAATTTGAAAATCTAGTTCAAAAATGTCCTAAATATCATGGAAGTCTTTTTTCCAATTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTCCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTAGTTCAAAAATGTCCTAAATATCTTGGAAGTTTTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAGGTCTTCCCCAGATTCTGGATGAACAAATTCAAAATCAACATTTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTCTAATTTCGACCTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>AAAAACGTCAGAACCAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTTCTAATTTCGACCTTTTCTGTCACTTTTTTTTTCTTCTTCTTCTTCTTTTTCTATATTCAGAGAAGGAAAAAGAAGAAGAAGAAGACCTTGATGAACATCATTCCAATAAGAGAAATTGATGAATGAATCATTGAAAATCAAAAGAATACCGCAAAATTTATGGTTTTCATAATTTGGAGAAGTGGAAGGAAAAGAAGAAGAAGGATTCAGAATCCCCGTTCAAAAAATCTGGTTCTGACGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTCTTCTAATTTCGACCTTTTCTGTCACTTTTTTTTTCTTCTTCTTCTTCTTTTTCTATATTCAGAGAAGGAAAAAGAAGAAGAAGAAGACCTTGATGAACATCATTCCAATAAGAGAAATTGATGAATGAATCATTGAAAATCAAARGAATACCGCAAAATTTATGGTTTTCATAATTTGGAGAAGTGGAAGGAAAAGAAGAAGAAGGATTCAGAATCCCCGTTCAAAAAATCTGGTTCTGACGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2809</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>490680</contig_pos>
        <strand>+</strand>
        <context>TGACGTTTTT[A/C]ATATTCCTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAAGAAGGATTCAGAATCCCCGTTCAAAAAATCTGGTTCTGACGTTTTT</left_flank>
        <right_flank>ATATTCCTAGATTAGGCACAATTTTCTTATTTCCATAGCGTCAAAACAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTCCATCCAAAATCTGGGGAAGGCTGAATCTGGAGAAGACCGAATATGGAGAAGAAGAAGAGTTTTTTCTTCAAAAATTTTTGGGAAAAGATTCCCAAAATATTCCAGACATTTTTGAAGTAGATTTGATAAGTTTAGGTATGGTCCATCCAAAATCTGGAGAAGACTAGATTCGGAGAAGACCAAATTTGGAGAAGAAGAATACATTTTTCTTATCCATATTTTTTTCTCACTTGATCTACTAGTTTTTCTTCTAATTTCGACCTTTTCTGTCACTTTTTTTTTCTTCTTCTTCTTCTTTTTCTATATTCAGAGAAGGAAAAAGAAGAAGAAGAAGACCTTGATGAACATCATTCCAATAAGAGAAATTGATGAATGAATCATTGAAAATCAAAAGAATACCGCAAAATTTATGGTTTTCATAATTTGGAGAAGTGGAAGGAAAAGAAGAAGAAGGATTCAGAATCCCCGTTCAAAAAATCTGGTTCTGACGTTTTTAATATTCCTAGATTAGGCACAATTTTCTTATTTCCATAGCGTCAAAACAAACCAAAAAAATAATTTTCTTCTCCAGATTTGGTCTTCTCCAAATCTGGTCTTCTCCAGATTTTGGATGGACCAATTCCAAAATTTGAAAATCTAGTTCAAAAATGTCCTAAATATCATGGAAGTCTTTTTTCCAATTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTCCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTAGTTCAAAAATGTCCTAAATATCTTGGAAGTTTTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAGGTCTTCCCCAGATTCTGGATGAACAAATTCAAAATCAACATTTCTCAAAATTTCAAAGTTCTGAAATTTTCCAAAGAGATATGCGCCTTTAAACTTGACTAATCCCCTTGTATTTGCTTTCCAATGTGTCTGTAGGCCAAAAAAGGGGA</canonical>
            <polymorphic>GGTCCATCCAAAATCTGGGGAAGGCTGAATCTGGAGAAGACCGAATATGGAGAAGAAGAAGAGTTTTTTCTTCAAAAATTTTTGGGAAAAGATTCCCAAAATATTCCAGACATTTTTGAAGTAGATTTGATAAGTTTAGGTATGGTCCATCCAAAATCTGGAGAAGACTAGATTCGGAGAAGACCAAATTTGGAGAAGAAGAATACATTTTTCTTATCCATATTTTTTTCTCACTTGATCTACTAGTTTTTCTTCTAATTTCGACCTTTTCTGTCACTTTTTTTTTCTTCTTCTTCTTCTTTTTCTATATTCAGAGAAGGAAAAAGAAGAAGAAGAAGACCTTGATGAACATCATTCCAATAAGAGAAATTGATGAATGAATCATTGAAAATCAAAAGAATACCGCAAAATTTATGGTTTTCATAATTTGGAGAAGTGGAAGGAAAAGAAGAAGAAGGATTCAGAATCCCCGTTCAAAAAATCTGGTTCTGACGTTTTTMATATTCCTAGATTAGGCACAATTTTCTTATTTCCATAGCGTCAAAACAAACCAAAAAAATAATTTTCTTCTCCAGATTTGGTCTTCTCCAAATCTGGTCTTCTCCAGATTTTGGATGGACCAATTCCAAAATTTGAAAATCTAGTTCAAAAATGTCCTAAATATCATGGAAGTCTTTTTTCCAATTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTCCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTAGTTCAAAAATGTCCTAAATATCTTGGAAGTTTTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAGGTCTTCCCCAGATTCTGGATGAACAAATTCAAAATCAACATTTCTCAAAATTTCAAAGTTCTGAAATTTTCCAAAGAGATATGCGCCTTTAAACTTGACTAATCCCCTTGTATTTGCTTTCCAATGTGTCTGTAGGCCAAAAAAGGGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>498 442 60</canonical_bands>
                <polymorphic_bands>940 60</polymorphic_bands>
            </assay>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>400 309 189 102</canonical_bands>
                <polymorphic_bands>709 189 102</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCCAATAAGAGAAATTGATGA</pcr_primer_p1>
		<pcr_primer_p2>AGAAGACCAGATTTGGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCCAATAAGAGAAATTGATGAATGAATCATTGAAAATCAAAAGAATACCGCAAAATTTATGGTTTTCATAATTTGGAGAAGTGGAAGGAAAAGAAGAAGAAGGATTCAGAATCCCCGTTCAAAAAATCTGGTTCTGACGTTTTTAATATTCCTAGATTAGGCACAATTTTCTTATTTCCATAGCGTCAAAACAAACCAAAAAAATAATTTTCTTCTCCAGATTTGGTCTTCTCCAAATCTGGTCTTCT</canonical_amplicon>
		<polymorphic_amplicon>ATTCCAATAAGAGAAATTGATGAATGAATCATTGAAAATCAAAAGAATACCGCAAAATTTATGGTTTTCATAATTTGGAGAAGTGGAAGGAAAAGAAGAAGAAGGATTCAGAATCCCCGTTCAAAAAATCTGGTTCTGACGTTTTTMATATTCCTAGATTAGGCACAATTTTCTTATTTCCATAGCGTCAAAACAAACCAAAAAAATAATTTTCTTCTCCAGATTTGGTCTTCTCCAAATCTGGTCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2810</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>490740</contig_pos>
        <strand>+</strand>
        <context>ACCAAAAAAA[G/T]AATTTTCTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATTAGGCACAATTTTCTTATTTCCATAGCGTCAAAACAAACCAAAAAAA</left_flank>
        <right_flank>AATTTTCTTCTCCAGATTTGGTCTTCTCCAAATCTGGTCTTCTCCAGATT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTTTTTTCTTCAAAAATTTTTGGGAAAAGATTCCCAAAATATTCCAGACATTTTTGAAGTAGATTTGATAAGTTTAGGTATGGTCCATCCAAAATCTGGAGAAGACTAGATTCGGAGAAGACCAAATTTGGAGAAGAAGAATACATTTTTCTTATCCATATTTTTTTCTCACTTGATCTACTAGTTTTTCTTCTAATTTCGACCTTTTCTGTCACTTTTTTTTTCTTCTTCTTCTTCTTTTTCTATATTCAGAGAAGGAAAAAGAAGAAGAAGAAGACCTTGATGAACATCATTCCAATAAGAGAAATTGATGAATGAATCATTGAAAATCAAAAGAATACCGCAAAATTTATGGTTTTCATAATTTGGAGAAGTGGAAGGAAAAGAAGAAGAAGGATTCAGAATCCCCGTTCAAAAAATCTGGTTCTGACGTTTTTAATATTCCTAGATTAGGCACAATTTTCTTATTTCCATAGCGTCAAAACAAACCAAAAAAATAATTTTCTTCTCCAGATTTGGTCTTCTCCAAATCTGGTCTTCTCCAGATTTTGGATGGACCAATTCCAAAATTTGAAAATCTAGTTCAAAAATGTCCTAAATATCATGGAAGTCTTTTTTCCAATTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTCCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTAGTTCAAAAATGTCCTAAATATCTTGGAAGTTTTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAGGTCTTCCCCAGATTCTGGATGAACAAATTCAAAATCAACATTTCTCAAAATTTCAAAGTTCTGAAATTTTCCAAAGAGATATGCGCCTTTAAACTTGACTAATCCCCTTGTATTTGCTTTCCAATGTGTCTGTAGGCCAAAAAAGGGGACTTTCTCAAGTTCCCATGACCAAAAAGGGGAACAAATAGAATGAAATGAACACTAAATTT</canonical>
            <polymorphic>GAGTTTTTTCTTCAAAAATTTTTGGGAAAAGATTCCCAAAATATTCCAGACATTTTTGAAGTAGATTTGATAAGTTTAGGTATGGTCCATCCAAAATCTGGAGAAGACTAGATTCGGAGAAGACCAAATTTGGAGAAGAAGAATACATTTTTCTTATCCATATTTTTTTCTCACTTGATCTACTAGTTTTTCTTCTAATTTCGACCTTTTCTGTCACTTTTTTTTTCTTCTTCTTCTTCTTTTTCTATATTCAGAGAAGGAAAAAGAAGAAGAAGAAGACCTTGATGAACATCATTCCAATAAGAGAAATTGATGAATGAATCATTGAAAATCAAAAGAATACCGCAAAATTTATGGTTTTCATAATTTGGAGAAGTGGAAGGAAAAGAAGAAGAAGGATTCAGAATCCCCGTTCAAAAAATCTGGTTCTGACGTTTTTAATATTCCTAGATTAGGCACAATTTTCTTATTTCCATAGCGTCAAAACAAACCAAAAAAAKAATTTTCTTCTCCAGATTTGGTCTTCTCCAAATCTGGTCTTCTCCAGATTTTGGATGGACCAATTCCAAAATTTGAAAATCTAGTTCAAAAATGTCCTAAATATCATGGAAGTCTTTTTTCCAATTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTCCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTAGTTCAAAAATGTCCTAAATATCTTGGAAGTTTTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAGGTCTTCCCCAGATTCTGGATGAACAAATTCAAAATCAACATTTCTCAAAATTTCAAAGTTCTGAAATTTTCCAAAGAGATATGCGCCTTTAAACTTGACTAATCCCCTTGTATTTGCTTTCCAATGTGTCTGTAGGCCAAAAAAGGGGACTTTCTCAAGTTCCCATGACCAAAAAGGGGAACAAATAGAATGAAATGAACACTAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAAAATTTATGGTTTTCATAAT</pcr_primer_p1>
		<pcr_primer_p2>AGGACATTTTTGAACTAGATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GCAAAATTTATGGTTTTCATAATTTGGAGAAGTGGAAGGAAAAGAAGAAGAAGGATTCAGAATCCCCGTTCAAAAAATCTGGTTCTGACGTTTTTAATATTCCTAGATTAGGCACAATTTTCTTATTTCCATAGCGTCAAAACAAACCAAAAAAATAATTTTCTTCTCCAGATTTGGTCTTCTCCAAATCTGGTCTTCTCCAGATTTTGGATGGACCAATTCCAAAATTTGAAAATCTAGTTCAAAAATGTCCT</canonical_amplicon>
		<polymorphic_amplicon>GCAAAATTTATGGTTTTCATAATTTGGAGAAGTGGAAGGAAAAGAAGAAGAAGGATTCAGAATCCCCGTTCAAAAAATCTGGTTCTGACGTTTTTAATATTCCTAGATTAGGCACAATTTTCTTATTTCCATAGCGTCAAAACAAACCAAAAAAAKAATTTTCTTCTCCAGATTTGGTCTTCTCCAAATCTGGTCTTCTCCAGATTTTGGATGGACCAATTCCAAAATTTGAAAATCTAGTTCAAAAATGTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2811</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>490845</contig_pos>
        <strand>+</strand>
        <context>TCCTAAATAT[C/T]ATGGAAGTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGGACCAATTCCAAAATTTGAAAATCTAGTTCAAAAATGTCCTAAATAT</left_flank>
        <right_flank>ATGGAAGTCTTTTTTCCAATTTTTTTTCAAAAAATTTTCTTCTTCTTCTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACTAGATTCGGAGAAGACCAAATTTGGAGAAGAAGAATACATTTTTCTTATCCATATTTTTTTCTCACTTGATCTACTAGTTTTTCTTCTAATTTCGACCTTTTCTGTCACTTTTTTTTTCTTCTTCTTCTTCTTTTTCTATATTCAGAGAAGGAAAAAGAAGAAGAAGAAGACCTTGATGAACATCATTCCAATAAGAGAAATTGATGAATGAATCATTGAAAATCAAAAGAATACCGCAAAATTTATGGTTTTCATAATTTGGAGAAGTGGAAGGAAAAGAAGAAGAAGGATTCAGAATCCCCGTTCAAAAAATCTGGTTCTGACGTTTTTAATATTCCTAGATTAGGCACAATTTTCTTATTTCCATAGCGTCAAAACAAACCAAAAAAATAATTTTCTTCTCCAGATTTGGTCTTCTCCAAATCTGGTCTTCTCCAGATTTTGGATGGACCAATTCCAAAATTTGAAAATCTAGTTCAAAAATGTCCTAAATATCATGGAAGTCTTTTTTCCAATTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTCCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTAGTTCAAAAATGTCCTAAATATCTTGGAAGTTTTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAGGTCTTCCCCAGATTCTGGATGAACAAATTCAAAATCAACATTTCTCAAAATTTCAAAGTTCTGAAATTTTCCAAAGAGATATGCGCCTTTAAACTTGACTAATCCCCTTGTATTTGCTTTCCAATGTGTCTGTAGGCCAAAAAAGGGGACTTTCTCAAGTTCCCATGACCAAAAAGGGGAACAAATAGAATGAAATGAACACTAAATTTCCGCCCGACCTAGTTTAACGGGTTCATCTTATATCACATTCTCTCATACACATCAAAAGAAATGTGCCGAAACCTAAAAAAGAGGTTTCCCACCCTAAAATAGCC</canonical>
            <polymorphic>GACTAGATTCGGAGAAGACCAAATTTGGAGAAGAAGAATACATTTTTCTTATCCATATTTTTTTCTCACTTGATCTACTAGTTTTTCTTCTAATTTCGACCTTTTCTGTCACTTTTTTTTTCTTCTTCTTCTTCTTTTTCTATATTCAGAGAAGGAAAAAGAAGAAGAAGAAGACCTTGATGAACATCATTCCAATAAGAGAAATTGATGAATGAATCATTGAAAATCAAAAGAATACCGCAAAATTTATGGTTTTCATAATTTGGAGAAGTGGAAGGAAAAGAAGAAGAAGGATTCAGAATCCCCGTTCAAAAAATCTGGTTCTGACGTTTTTAATATTCCTAGATTAGGCACAATTTTCTTATTTCCATAGCGTCAAAACAAACCAAAAAAATAATTTTCTTCTCCAGATTTGGTCTTCTCCAAATCTGGTCTTCTCCAGATTTTGGATGGACCAATTCCAAAATTTGAAAATCTAGTTCAAAAATGTCCTAAATATYATGGAAGTCTTTTTTCCAATTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTCCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTAGTTCAAAAATGTCCTAAATATCTTGGAAGTTTTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAGGTCTTCCCCAGATTCTGGATGAACAAATTCAAAATCAACATTTCTCAAAATTTCAAAGTTCTGAAATTTTCCAAAGAGATATGCGCCTTTAAACTTGACTAATCCCCTTGTATTTGCTTTCCAATGTGTCTGTAGGCCAAAAAAGGGGACTTTCTCAAGTTCCCATGACCAAAAAGGGGAACAAATAGAATGAAATGAACACTAAATTTCCGCCCGACCTAGTTTAACGGGTTCATCTTATATCACATTCTCTCATACACATCAAAAGAAATGTGCCGAAACCTAAAAAAGAGGTTTCCCACCCTAAAATAGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 350 150</canonical_bands>
                <polymorphic_bands>850 150</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATCTGGTTCTGACGTTTT</pcr_primer_p1>
		<pcr_primer_p2>ACCTGGAGAAGAAGAAGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAAATCTGGTTCTGACGTTTTTAATATTCCTAGATTAGGCACAATTTTCTTATTTCCATAGCGTCAAAACAAACCAAAAAAATAATTTTCTTCTCCAGATTTGGTCTTCTCCAAATCTGGTCTTCTCCAGATTTTGGATGGACCAATTCCAAAATTTGAAAATCTAGTTCAAAAATGTCCTAAATATCATGGAAGTCTTTTTTCCAATTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGT</canonical_amplicon>
		<polymorphic_amplicon>AAAATCTGGTTCTGACGTTTTTAATATTCCTAGATTAGGCACAATTTTCTTATTTCCATAGCGTCAAAACAAACCAAAAAAATAATTTTCTTCTCCAGATTTGGTCTTCTCCAAATCTGGTCTTCTCCAGATTTTGGATGGACCAATTCCAAAATTTGAAAATCTAGTTCAAAAATGTCCTAAATATYATGGAAGTCTTTTTTCCAATTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2812</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>490911</contig_pos>
        <strand>+</strand>
        <context>TCCGCCTTCT[C/G]CAGATTCTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCAATTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCT</left_flank>
        <right_flank>CAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTAGTTCAAAAATG</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACTTGATCTACTAGTTTTTCTTCTAATTTCGACCTTTTCTGTCACTTTTTTTTTCTTCTTCTTCTTCTTTTTCTATATTCAGAGAAGGAAAAAGAAGAAGAAGAAGACCTTGATGAACATCATTCCAATAAGAGAAATTGATGAATGAATCATTGAAAATCAAAAGAATACCGCAAAATTTATGGTTTTCATAATTTGGAGAAGTGGAAGGAAAAGAAGAAGAAGGATTCAGAATCCCCGTTCAAAAAATCTGGTTCTGACGTTTTTAATATTCCTAGATTAGGCACAATTTTCTTATTTCCATAGCGTCAAAACAAACCAAAAAAATAATTTTCTTCTCCAGATTTGGTCTTCTCCAAATCTGGTCTTCTCCAGATTTTGGATGGACCAATTCCAAAATTTGAAAATCTAGTTCAAAAATGTCCTAAATATCATGGAAGTCTTTTTTCCAATTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTCCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTAGTTCAAAAATGTCCTAAATATCTTGGAAGTTTTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAGGTCTTCCCCAGATTCTGGATGAACAAATTCAAAATCAACATTTCTCAAAATTTCAAAGTTCTGAAATTTTCCAAAGAGATATGCGCCTTTAAACTTGACTAATCCCCTTGTATTTGCTTTCCAATGTGTCTGTAGGCCAAAAAAGGGGACTTTCTCAAGTTCCCATGACCAAAAAGGGGAACAAATAGAATGAAATGAACACTAAATTTCCGCCCGACCTAGTTTAACGGGTTCATCTTATATCACATTCTCTCATACACATCAAAAGAAATGTGCCGAAACCTAAAAAAGAGGTTTCCCACCCTAAAATAGCCTATTTTAGGTTAAAAATGGGACATTTTAAGCCCAGAAAAAGCCCTAAACTATAAAAAGAGCACTTG</canonical>
            <polymorphic>CACTTGATCTACTAGTTTTTCTTCTAATTTCGACCTTTTCTGTCACTTTTTTTTTCTTCTTCTTCTTCTTTTTCTATATTCAGAGAAGGAAAAAGAAGAAGAAGAAGACCTTGATGAACATCATTCCAATAAGAGAAATTGATGAATGAATCATTGAAAATCAAAAGAATACCGCAAAATTTATGGTTTTCATAATTTGGAGAAGTGGAAGGAAAAGAAGAAGAAGGATTCAGAATCCCCGTTCAAAAAATCTGGTTCTGACGTTTTTAATATTCCTAGATTAGGCACAATTTTCTTATTTCCATAGCGTCAAAACAAACCAAAAAAATAATTTTCTTCTCCAGATTTGGTCTTCTCCAAATCTGGTCTTCTCCAGATTTTGGATGGACCAATTCCAAAATTTGAAAATCTAGTTCAAAAATGTCCTAAATATCATGGAAGTCTTTTTTCCAATTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTSCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTAGTTCAAAAATGTCCTAAATATCTTGGAAGTTTTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAGGTCTTCCCCAGATTCTGGATGAACAAATTCAAAATCAACATTTCTCAAAATTTCAAAGTTCTGAAATTTTCCAAAGAGATATGCGCCTTTAAACTTGACTAATCCCCTTGTATTTGCTTTCCAATGTGTCTGTAGGCCAAAAAAGGGGACTTTCTCAAGTTCCCATGACCAAAAAGGGGAACAAATAGAATGAAATGAACACTAAATTTCCGCCCGACCTAGTTTAACGGGTTCATCTTATATCACATTCTCTCATACACATCAAAAGAAATGTGCCGAAACCTAAAAAAGAGGTTTCCCACCCTAAAATAGCCTATTTTAGGTTAAAAATGGGACATTTTAAGCCCAGAAAAAGCCCTAAACTATAAAAAGAGCACTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNTGG</site>
                <isoschizomers>
                    <enzyme>AccB7I</enzyme>
                    <enzyme>PflBI</enzyme>
                    <enzyme>PflMI</enzyme>
                    <enzyme>Van91I</enzyme>
                </isoschizomers>
                <canonical_bands>379 366 128 127</canonical_bands>
                <polymorphic_bands>379 366 255</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>281 144 129 128 127 98 61 32</canonical_bands>
                <polymorphic_bands>281 255 144 129 98 61 32</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>365 341 128 127 32 7</canonical_bands>
                <polymorphic_bands>365 341 134 128 32</polymorphic_bands>
            </assay>
            <assay>
                <site>CCANNNNNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>XcmI</enzyme>
                </isoschizomers>
                <canonical_bands>493 380 127</canonical_bands>
                <polymorphic_bands>620 380</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATCTAGTTCAAAAATGTCCT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAATTTGTTCATCCAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAATCTAGTTCAAAAATGTCCTAAATATCATGGAAGTCTTTTTTCCAATTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTCCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTAGTTCAAAAATGTCCTAAATATCTTGGAAGTTTTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAGGTCTTCCCCAGATTCTGGATGAACAAATTCAAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAATCTAGTTCAAAAATGTCCTAAATATCATGGAAGTCTTTTTTCCAATTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTSCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTAGTTCAAAAATGTCCTAAATATCTTGGAAGTTTTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAGGTCTTCCCCAGATTCTGGATGAACAAATTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2813</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>490981</contig_pos>
        <strand>+</strand>
        <context>TCTTGGAAGT[C/T]TTTTACCAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCAAAAATCCTAAATCTAGTTCAAAAATGTCCTAAATATCTTGGAAGT</left_flank>
        <right_flank>TTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTATATTCAGAGAAGGAAAAAGAAGAAGAAGAAGACCTTGATGAACATCATTCCAATAAGAGAAATTGATGAATGAATCATTGAAAATCAAAAGAATACCGCAAAATTTATGGTTTTCATAATTTGGAGAAGTGGAAGGAAAAGAAGAAGAAGGATTCAGAATCCCCGTTCAAAAAATCTGGTTCTGACGTTTTTAATATTCCTAGATTAGGCACAATTTTCTTATTTCCATAGCGTCAAAACAAACCAAAAAAATAATTTTCTTCTCCAGATTTGGTCTTCTCCAAATCTGGTCTTCTCCAGATTTTGGATGGACCAATTCCAAAATTTGAAAATCTAGTTCAAAAATGTCCTAAATATCATGGAAGTCTTTTTTCCAATTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTCCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTAGTTCAAAAATGTCCTAAATATCTTGGAAGTTTTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAGGTCTTCCCCAGATTCTGGATGAACAAATTCAAAATCAACATTTCTCAAAATTTCAAAGTTCTGAAATTTTCCAAAGAGATATGCGCCTTTAAACTTGACTAATCCCCTTGTATTTGCTTTCCAATGTGTCTGTAGGCCAAAAAAGGGGACTTTCTCAAGTTCCCATGACCAAAAAGGGGAACAAATAGAATGAAATGAACACTAAATTTCCGCCCGACCTAGTTTAACGGGTTCATCTTATATCACATTCTCTCATACACATCAAAAGAAATGTGCCGAAACCTAAAAAAGAGGTTTCCCACCCTAAAATAGCCTATTTTAGGTTAAAAATGGGACATTTTAAGCCCAGAAAAAGCCCTAAACTATAAAAAGAGCACTTGAAAATTGTATATTTCCCCTCTTTTCCAAAATTTCAACACTTTTTATTTACCCTCTAAACGCGTTAGAGGA</canonical>
            <polymorphic>TTTCTATATTCAGAGAAGGAAAAAGAAGAAGAAGAAGACCTTGATGAACATCATTCCAATAAGAGAAATTGATGAATGAATCATTGAAAATCAAAAGAATACCGCAAAATTTATGGTTTTCATAATTTGGAGAAGTGGAAGGAAAAGAAGAAGAAGGATTCAGAATCCCCGTTCAAAAAATCTGGTTCTGACGTTTTTAATATTCCTAGATTAGGCACAATTTTCTTATTTCCATAGCGTCAAAACAAACCAAAAAAATAATTTTCTTCTCCAGATTTGGTCTTCTCCAAATCTGGTCTTCTCCAGATTTTGGATGGACCAATTCCAAAATTTGAAAATCTAGTTCAAAAATGTCCTAAATATCATGGAAGTCTTTTTTCCAATTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTCCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTAGTTCAAAAATGTCCTAAATATCTTGGAAGTYTTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAGGTCTTCCCCAGATTCTGGATGAACAAATTCAAAATCAACATTTCTCAAAATTTCAAAGTTCTGAAATTTTCCAAAGAGATATGCGCCTTTAAACTTGACTAATCCCCTTGTATTTGCTTTCCAATGTGTCTGTAGGCCAAAAAAGGGGACTTTCTCAAGTTCCCATGACCAAAAAGGGGAACAAATAGAATGAAATGAACACTAAATTTCCGCCCGACCTAGTTTAACGGGTTCATCTTATATCACATTCTCTCATACACATCAAAAGAAATGTGCCGAAACCTAAAAAAGAGGTTTCCCACCCTAAAATAGCCTATTTTAGGTTAAAAATGGGACATTTTAAGCCCAGAAAAAGCCCTAAACTATAAAAAGAGCACTTGAAAATTGTATATTTCCCCTCTTTTCCAAAATTTCAACACTTTTTATTTACCCTCTAAACGCGTTAGAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCTTCTTCTTCTCCAGGT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTAAAGGCGCATATCTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTCCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTAGTTCAAAAATGTCCTAAATATCTTGGAAGTTTTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAGGTCTTCCCCAGATTCTGGATGAACAAATTCAAAATCAACATTTCTCAAAATTTCAAAGTTCTGAAATTTTCCAAAGAGATATGCGCCTTTAAACTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTCCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTAGTTCAAAAATGTCCTAAATATCTTGGAAGTYTTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAGGTCTTCCCCAGATTCTGGATGAACAAATTCAAAATCAACATTTCTCAAAATTTCAAAGTTCTGAAATTTTCCAAAGAGATATGCGCCTTTAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2814</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>519598</contig_pos>
        <strand>+</strand>
        <context>GAAAAAAATT[G/T]TATACCTGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATCGGTTGTCTAGGCACCGAGTTATGAAACCTTGAAAATTGAAAAAAATT</left_flank>
        <right_flank>TATACCTGGATTCCACCTACACACAACCAAATCCCATCCAATTATCCACC</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGCAGCTATTGGAGCAATCGGAGCCAGACAATGTATTCAAATGCGTCGAGTTTGTTGAGTGATCTGTTATCGGATTACGATATTAGGTTGAGGCCTGGATTTGGAGGTAATTTGAAAATCTTATTTTTTGGAAATTTTGGGGGTATACATTTTTTAAATCGATTTTTTGAAATTTCAAAAAATTGAAAGTTTATAGCATTATATATTTTTACAATGCTCAGAAAATTTCCTTTGTTTTAATATTAAAATCAAAACTATTGGTTGCCTAAGCACCAAGTTATGAAACTTTGAAAAAATTTTTTCAAAAAAATCTTTTTTTTTTGAAAATTTTTGGGATGCATTTTTGGAATCGAGTTTTTGAACTTGCGAAAAATTATAAGTATTTAGAAAATTATATTTTCAAAAAGCTAAGAAAATTAACATTCTATTAACACTAAAACCAAAAAAATCGGTTGTCTAGGCACCGAGTTATGAAACCTTGAAAATTGAAAAAAATTTTATACCTGGATTCCACCTACACACAACCAAATCCCATCCAATTATCCACCCTCTTAACCTAACCTTCTCCCAATTTTTTCAAATTCAATTTTCCCCCTTTTTCTTGTCCCAAATTGAAAAAAAAAGTATCCCAAGTGAGCAAAAACCCCTGTTTCCCGAGCTGCTGGGGACCTTTTAAGATTGAATTTTGACATAGATCGACAAGAGAGTATGGAAAATTGAGAGACGCAGACAGATTAGGGTGTGACACTTTTTGTTTCGAAATTCGATTTTTTTTTTTGGGAATTTTTTTTTGAATTTTCTGCTGATTCCAAACGTCTTCTGAAGCTTCCAGAAGCTTTTAGAAAACTCAAAAATTTGAAAAAAGGAAGAAAAAGTTTATATACCCCCAGGGACCACTTATCATGAAGCTGTCAGCACCAGAATACAATGCCAAAACATTGGGATTTTGGAAAAAAAATTTTTTGAGCCTTAAAAGTTTTTCCAGGCGACGCACTTCT</canonical>
            <polymorphic>TCAGCAGCTATTGGAGCAATCGGAGCCAGACAATGTATTCAAATGCGTCGAGTTTGTTGAGTGATCTGTTATCGGATTACGATATTAGGTTGAGGCCTGGATTTGGAGGTAATTTGAAAATCTTATTTTTTGGAAATTTTGGGGGTATACATTTTTTAAATCGATTTTTTGAAATTTCAAAAAATTGAAAGTTTATAGCATTATATATTTTTACAATGCTCAGAAAATTTCCTTTGTTTTAATATTAAAATCAAAACTATTGGTTGCCTAAGCACCAAGTTATGAAACTTTGAAAAAATTTTTTCAAAAAAATCTTTTTTTTTTGAAAATTTTTGGGATGCATTTTTGGAATCGAGTTTTTGAACTTGCGAAAAATTATAAGTATTTAGAAAATTATATTTTCAAAAAGCTAAGAAAATTAACATTCTATTAACACTAAAACCAAAAAAATCGGTTGTCTAGGCACCGAGTTATGAAACCTTGAAAATTGAAAAAAATTKTATACCTGGATTCCACCTACACACAACCAAATCCCATCCAATTATCCACCCTCTTAACCTAACCTTCTCCCAATTTTTTCAAATTCAATTTTCCCCCTTTTTCTTGTCCCAAATTGAAAAAAAAAGTATCCCAAGTGAGCAAAAACCCCTGTTTCCCGAGCTGCTGGGGACCTTTTAAGATTGAATTTTGACATAGATCGACAAGAGAGTATGGAAAATTGAGAGACGCAGACAGATTAGGGTGTGACACTTTTTGTTTCGAAATTCGATTTTTTTTTTTGGGAATTTTTTTTTGAATTTTCTGCTGATTCCAAACGTCTTCTGAAGCTTCCAGAAGCTTTTAGAAAACTCAAAAATTTGAAAAAAGGAAGAAAAAGTTTATATACCCCCAGGGACCACTTATCATGAAGCTGTCAGCACCAGAATACAATGCCAAAACATTGGGATTTTGGAAAAAAAATTTTTTGAGCCTTAAAAGTTTTTCCAGGCGACGCACTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>168 134 104 102 86 79 71 59 53 42 38 31 21 12</canonical_bands>
                <polymorphic_bands>254 134 104 102 79 71 59 53 42 38 31 21 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAAAAAGCTAAGAAAATTAACA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTGCTCACTTGGGATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTCAAAAAGCTAAGAAAATTAACATTCTATTAACACTAAAACCAAAAAAATCGGTTGTCTAGGCACCGAGTTATGAAACCTTGAAAATTGAAAAAAATTTTATACCTGGATTCCACCTACACACAACCAAATCCCATCCAATTATCCACCCTCTTAACCTAACCTTCTCCCAATTTTTTCAAATTCAATTTTCCCCCTTTTTCTTGTCCCAAATTGAAAAAAAAAGTATCCCAAGTGAGCAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TTCAAAAAGCTAAGAAAATTAACATTCTATTAACACTAAAACCAAAAAAATCGGTTGTCTAGGCACCGAGTTATGAAACCTTGAAAATTGAAAAAAATTKTATACCTGGATTCCACCTACACACAACCAAATCCCATCCAATTATCCACCCTCTTAACCTAACCTTCTCCCAATTTTTTCAAATTCAATTTTCCCCCTTTTTCTTGTCCCAAATTGAAAAAAAAAGTATCCCAAGTGAGCAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2815</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>519748</contig_pos>
        <strand></strand>
        <context>CAAAAACCCC[T/C]GTTTCCCGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTCTTGTCCCAAATTGAAAAAAAAAGTATCCCAAGTGAGCAAAAACCCC</left_flank>
        <right_flank>GTTTCCCGAGCTGCTGGGGACCTTTTAAGATTGAATTTTGACATAGATCG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTAAATCGATTTTTTGAAATTTCAAAAAATTGAAAGTTTATAGCATTATATATTTTTACAATGCTCAGAAAATTTCCTTTGTTTTAATATTAAAATCAAAACTATTGGTTGCCTAAGCACCAAGTTATGAAACTTTGAAAAAATTTTTTCAAAAAAATCTTTTTTTTTTGAAAATTTTTGGGATGCATTTTTGGAATCGAGTTTTTGAACTTGCGAAAAATTATAAGTATTTAGAAAATTATATTTTCAAAAAGCTAAGAAAATTAACATTCTATTAACACTAAAACCAAAAAAATCGGTTGTCTAGGCACCGAGTTATGAAACCTTGAAAATTGAAAAAAATTTTATACCTGGATTCCACCTACACACAACCAAATCCCATCCAATTATCCACCCTCTTAACCTAACCTTCTCCCAATTTTTTCAAATTCAATTTTCCCCCTTTTTCTTGTCCCAAATTGAAAAAAAAAGTATCCCAAGTGAGCAAAAACCCCTGTTTCCCGAGCTGCTGGGGACCTTTTAAGATTGAATTTTGACATAGATCGACAAGAGAGTATGGAAAATTGAGAGACGCAGACAGATTAGGGTGTGACACTTTTTGTTTCGAAATTCGATTTTTTTTTTTGGGAATTTTTTTTTGAATTTTCTGCTGATTCCAAACGTCTTCTGAAGCTTCCAGAAGCTTTTAGAAAACTCAAAAATTTGAAAAAAGGAAGAAAAAGTTTATATACCCCCAGGGACCACTTATCATGAAGCTGTCAGCACCAGAATACAATGCCAAAACATTGGGATTTTGGAAAAAAAATTTTTTGAGCCTTAAAAGTTTTTCCAGGCGACGCACTTCTTCTCACCATGGACATCATCATTGCATCGTTCGATTCGATTTCGGAAGTTGATATGGTATCTAGAGATTGAGAGACGCAGAGATATTTTTACAAAAAAATATTCCAGGACTACACTCTGACCATGTATCTACACCAATATTGGACAGATGA</canonical>
            <polymorphic>ATTTTTTAAATCGATTTTTTGAAATTTCAAAAAATTGAAAGTTTATAGCATTATATATTTTTACAATGCTCAGAAAATTTCCTTTGTTTTAATATTAAAATCAAAACTATTGGTTGCCTAAGCACCAAGTTATGAAACTTTGAAAAAATTTTTTCAAAAAAATCTTTTTTTTTTGAAAATTTTTGGGATGCATTTTTGGAATCGAGTTTTTGAACTTGCGAAAAATTATAAGTATTTAGAAAATTATATTTTCAAAAAGCTAAGAAAATTAACATTCTATTAACACTAAAACCAAAAAAATCGGTTGTCTAGGCACCGAGTTATGAAACCTTGAAAATTGAAAAAAATTTTATACCTGGATTCCACCTACACACAACCAAATCCCATCCAATTATCCACCCTCTTAACCTAACCTTCTCCCAATTTTTTCAAATTCAATTTTCCCCCTTTTTCTTGTCCCAAATTGAAAAAAAAAGTATCCCAAGTGAGCAAAAACCCCYGTTTCCCGAGCTGCTGGGGACCTTTTAAGATTGAATTTTGACATAGATCGACAAGAGAGTATGGAAAATTGAGAGACGCAGACAGATTAGGGTGTGACACTTTTTGTTTCGAAATTCGATTTTTTTTTTTGGGAATTTTTTTTTGAATTTTCTGCTGATTCCAAACGTCTTCTGAAGCTTCCAGAAGCTTTTAGAAAACTCAAAAATTTGAAAAAAGGAAGAAAAAGTTTATATACCCCCAGGGACCACTTATCATGAAGCTGTCAGCACCAGAATACAATGCCAAAACATTGGGATTTTGGAAAAAAAATTTTTTGAGCCTTAAAAGTTTTTCCAGGCGACGCACTTCTTCTCACCATGGACATCATCATTGCATCGTTCGATTCGATTTCGGAAGTTGATATGGTATCTAGAGATTGAGAGACGCAGAGATATTTTTACAAAAAAATATTCCAGGACTACACTCTGACCATGTATCTACACCAATATTGGACAGATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTTATGAAACCTTGAAAATTG</pcr_primer_p1>
		<pcr_primer_p2>TCCATACTCTCTTGTCGATCTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAGTTATGAAACCTTGAAAATTGAAAAAAATTTTATACCTGGATTCCACCTACACACAACCAAATCCCATCCAATTATCCACCCTCTTAACCTAACCTTCTCCCAATTTTTTCAAATTCAATTTTCCCCCTTTTTCTTGTCCCAAATTGAAAAAAAAAGTATCCCAAGTGAGCAAAAACCCCTGTTTCCCGAGCTGCTGGGGACCTTTTAAGATTGAATTTTGACATAGATCGACAAGAGAGTATGGA</canonical_amplicon>
		<polymorphic_amplicon>GAGTTATGAAACCTTGAAAATTGAAAAAAATTTTATACCTGGATTCCACCTACACACAACCAAATCCCATCCAATTATCCACCCTCTTAACCTAACCTTCTCCCAATTTTTTCAAATTCAATTTTCCCCCTTTTTCTTGTCCCAAATTGAAAAAAAAAGTATCCCAAGTGAGCAAAAACCCCYGTTTCCCGAGCTGCTGGGGACCTTTTAAGATTGAATTTTGACATAGATCGACAAGAGAGTATGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2820</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>625599</contig_pos>
        <strand>+</strand>
        <context>AAATTTCCGG[G/T]TTGGAAGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAAGATTCAGAAGGGCAACTTTTGGATTGCTCAGCTTTAAAATTTCCGG</left_flank>
        <right_flank>TTGGAAGATTTTGGACCCTTTCCGGACCATCTAAACTAGCCTACTGTACT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCGGTCATTGCTCATTGTTAGCGAGCTACCGTAATCCCTAGAAAGCTACTAAAAGCTACAATTTTCATGTCCAGTGGGGCGAAATTGCATAGCTGTCATGTTTCTGTGGAAAAAAAACGAAAATTATAGGGTCCAGGAGCCTCTAAGGGTCCTAATGAGGGGTTGTAAAAGGACTACGGTAGATTTTTTCTAGAATTTTCTAGAAAATTTCCCCAGATTATGATGTTTCTTATTTTGAGTACTACACACTAATCTTCAATTACTCCCACTTCAAAAAATATCTAATCTCGGGTGGGATAAGGTGATTTGTGCTCAATAAAAGTCATCATCATGATGCTATTCAAAGAGATCAAAATTTTTTTTTTAAATCTCAATTTTTTGATCAAAAAATACACTTTTAGGTCAGGTCAAACATTCCTAAAACGACACGCAGGAGACTGAATCAAATGAAAGATTCAGAAGGGCAACTTTTGGATTGCTCAGCTTTAAAATTTCCGGTTTGGAAGATTTTGGACCCTTTCCGGACCATCTAAACTAGCCTACTGTACTCCTCACAAAAATAAAAAAAGTTTGGAGCCAGGTGGAATCGAACCCGGGTCGTGAGATTGGTAGTCGGGAAAAATCCCACTGAGCCAAAAGTGCAATTTTCAGAAAATCGGTCAAAAACAGCTTTAAACCTCGAAATTTCGATTTTTAAACTAGTTTTTTGAGCTTTTCAATCAATTTTGACTTTAGACGCCTTTTGTCCAGCCGTTTTCCAACCAATTTAGCTGAATTCTGGGTCATTGCTCATTCTTAACAAATTCTAGGCTCGTTTAGGTAGTTTTAGGCCCTTTCAGGCCCTCTACACTAGCCTACTGTACTCTACACAAAAACAAAAAAAGTTTGGTACTAAGTGGGATCGAACCGGGGTCGTGAGATTGGTAGTCGGGAAAAATCCCACTGAGCCAAAAGTGCAATTTTCAGAAAATCGCCTTTTCAAAGCGTTTAGGGTAATTT</canonical>
            <polymorphic>TCCGGTCATTGCTCATTGTTAGCGAGCTACCGTAATCCCTAGAAAGCTACTAAAAGCTACAATTTTCATGTCCAGTGGGGCGAAATTGCATAGCTGTCATGTTTCTGTGGAAAAAAAACGAAAATTATAGGGTCCAGGAGCCTCTAAGGGTCCTAATGAGGGGTTGTAAAAGGACTACGGTAGATTTTTTCTAGAATTTTCTAGAAAATTTCCCCAGATTATGATGTTTCTTATTTTGAGTACTACACACTAATCTTCAATTACTCCCACTTCAAAAAATATCTAATCTCGGGTGGGATAAGGTGATTTGTGCTCAATAAAAGTCATCATCATGATGCTATTCAAAGAGATCAAAATTTTTTTTTTAAATCTCAATTTTTTGATCAAAAAATACACTTTTAGGTCAGGTCAAACATTCCTAAAACGACACGCAGGAGACTGAATCAAATGAAAGATTCAGAAGGGCAACTTTTGGATTGCTCAGCTTTAAAATTTCCGGKTTGGAAGATTTTGGACCCTTTCCGGACCATCTAAACTAGCCTACTGTACTCCTCACAAAAATAAAAAAAGTTTGGAGCCAGGTGGAATCGAACCCGGGTCGTGAGATTGGTAGTCGGGAAAAATCCCACTGAGCCAAAAGTGCAATTTTCAGAAAATCGGTCAAAAACAGCTTTAAACCTCGAAATTTCGATTTTTAAACTAGTTTTTTGAGCTTTTCAATCAATTTTGACTTTAGACGCCTTTTGTCCAGCCGTTTTCCAACCAATTTAGCTGAATTCTGGGTCATTGCTCATTCTTAACAAATTCTAGGCTCGTTTAGGTAGTTTTAGGCCCTTTCAGGCCCTCTACACTAGCCTACTGTACTCTACACAAAAACAAAAAAAGTTTGGTACTAAGTGGGATCGAACCGGGGTCGTGAGATTGGTAGTCGGGAAAAATCCCACTGAGCCAAAAGTGCAATTTTCAGAAAATCGCCTTTTCAAAGCGTTTAGGGTAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>494 479 26 1</canonical_bands>
                <polymorphic_bands>520 479 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGATTCAGAAGGGCAACT</pcr_primer_p1>
		<pcr_primer_p2>CAATCTTGTTGAACCCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>946</pcr_amplicon_size>
		<canonical_amplicon>AAAGATTCAGAAGGGCAACTTTTGGATTGCTCAGCTTTAAAATTTCCGGTTTGGAAGATTTTGGACCCT</canonical_amplicon>
		<polymorphic_amplicon>AAAGATTCAGAAGGGCAACTTTTGGATTGCTCAGCTTTAAAATTTCCGGKTTGGAAGATTTTGGACCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2821</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>721042</contig_pos>
        <strand>+</strand>
        <context>CATTGAAGAC[A/G]TCCTGAAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTGACATGACAAATTCAAAAATCGACATTGTCAATTGCTCATTGAAGAC</left_flank>
        <right_flank>TCCTGAAACAAGAAAATTATTTTGAAATCTCCAAAATTCAAATTCCCGCC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCATACCCCTTTGGGGCCGGGGGGAAAAAGTGCACCAACTTTAAAGGCGCATAACTCAAAGACTAGCAGAGCTATCAAAAATATTTTAACTAAAACAATGTTGAAAATAAAAAATTAAACATTTTAGTAGTTTGTAGGTTTTTGTAGCTATCTTGGTTCCTGAGATATGCGCCTTTAAAGTTGGCGTTTCCCCAGGGCGCCGGGGAAAAGGCGCCGCCAAATTTGAAGGCGCATAACTCAAAAACTAACATAGCTATCAAAAATACTTAAATTACAAAAATGTAGATTATAAAGTTTTAAACATGTTTGTAGTTAGCAAAATTTAGGTAGCTTTTTCGATTCTTGAGATATGCTCCTTTAAAGTTTGCGCCCAAAATAGGTGCCCAAAATTTAAAGGCGCTTTGTTAAGAACCTTTTTTCCAAAAAAAAAAAAACTTACATTGACAGCCACTGACATGACAAATTCAAAAATCGACATTGTCAATTGCTCATTGAAGACGTCCTGAAACAAGAAAATTATTTTGAAATCTCCAAAATTCAAATTCCCGCCAACCCTTTCCACTCACCCCACTCCACCATAGCACCGCATAGGCCGTAGTCATAATACACAACGGGACCGACGTTCCAAACCATGGCCAAATGAGCACTTTTAGGTACTGTAAATTTTTTTTTTTTAACTTTTGTTTGGCGCCAAATTCAAATTTTTTCATTTTTTTTAAATTGAGGTACCTTATATGCTGCATAGAGCAGTAACGCAGAGGTAAGGAGGTTGAGGATGGAAAAGATAACGCAGACAATTATGATGACATACATGGCTGGAATTTCAGACTTTTGGGAATTTTTAAATTTTTAAAAATTCCAAAAATTACCATTAGCTCTCCGCCGCTCCGGGGTTTCTGTATAGATCTGATACAAACCTGGAAATCTCGCCTGGAAGCCATCGATTCTGAAATTTTCAGAATTTTAAGAAAAACATTTTTTGTCTGAAATTAAAGACTTA</canonical>
            <polymorphic>GCATACCCCTTTGGGGCCGGGGGGAAAAAGTGCACCAACTTTAAAGGCGCATAACTCAAAGACTAGCAGAGCTATCAAAAATATTTTAACTAAAACAATGTTGAAAATAAAAAATTAAACATTTTAGTAGTTTGTAGGTTTTTGTAGCTATCTTGGTTCCTGAGATATGCGCCTTTAAAGTTGGCGTTTCCCCAGGGCGCCGGGGAAAAGGCGCCGCCAAATTTGAAGGCGCATAACTCAAAAACTAACATAGCTATCAAAAATACTTAAATTACAAAAATGTAGATTATAAAGTTTTAAACATGTTTGTAGTTAGCAAAATTTAGGTAGCTTTTTCGATTCTTGAGATATGCTCCTTTAAAGTTTGCGCCCAAAATAGGTGCCCAAAATTTAAAGGCGCTTTGTTAAGAACCTTTTTTCCAAAAAAAAAAAAACTTACATTGACAGCCACTGACATGACAAATTCAAAAATCGACATTGTCAATTGCTCATTGAAGACRTCCTGAAACAAGAAAATTATTTTGAAATCTCCAAAATTCAAATTCCCGCCAACCCTTTCCACTCACCCCACTCCACCATAGCACCGCATAGGCCGTAGTCATAATACACAACGGGACCGACGTTCCAAACCATGGCCAAATGAGCACTTTTAGGTACTGTAAATTTTTTTTTTTTAACTTTTGTTTGGCGCCAAATTCAAATTTTTTCATTTTTTTTAAATTGAGGTACCTTATATGCTGCATAGAGCAGTAACGCAGAGGTAAGGAGGTTGAGGATGGAAAAGATAACGCAGACAATTATGATGACATACATGGCTGGAATTTCAGACTTTTGGGAATTTTTAAATTTTTAAAAATTCCAAAAATTACCATTAGCTCTCCGCCGCTCCGGGGTTTCTGTATAGATCTGATACAAACCTGGAAATCTCGCCTGGAAGCCATCGATTCTGAAATTTTCAGAATTTTAAGAAAAACATTTTTTGTCTGAAATTAAAGACTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACGTC</site>
                <isoschizomers>
                    <enzyme>AatII</enzyme>
                    <enzyme>ZraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>312 287 197 190 14</canonical_bands>
                <polymorphic_bands>477 312 197 14</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>498 380 122</canonical_bands>
                <polymorphic_bands>620 380</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACTTACATTGACAGCCACT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTTACAGTACCTAAAAGTGC</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AAAACTTACATTGACAGCCACTGACATGACAAATTCAAAAATCGACATTGTCAATTGCTCATTGAAGACGTCCTGAAACAAGAAAATTATTTTGAAATCTCCAAAATTCAAATTCCCGCCAACCCTTTCCACTCACCCCACTCCACCATAGCACCGCATAGGCCGTAGTCATAATACACAACGGGACCGACGTTCCAAACCATGGCCAAATGAGCACTTTTAGGTACTGTAAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAACTTACATTGACAGCCACTGACATGACAAATTCAAAAATCGACATTGTCAATTGCTCATTGAAGACRTCCTGAAACAAGAAAATTATTTTGAAATCTCCAAAATTCAAATTCCCGCCAACCCTTTCCACTCACCCCACTCCACCATAGCACCGCATAGGCCGTAGTCATAATACACAACGGGACCGACGTTCCAAACCATGGCCAAATGAGCACTTTTAGGTACTGTAAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2822</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>721350</contig_pos>
        <strand>+</strand>
        <context>TTATGATGAC[A/G]TACATGGCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGGTAAGGAGGTTGAGGATGGAAAAGATAACGCAGACAATTATGATGAC</left_flank>
        <right_flank>TACATGGCTGGAATTTCAGACTTTTGGGAATTTTTAAATTTTTAAAAATT</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAGTTAGCAAAATTTAGGTAGCTTTTTCGATTCTTGAGATATGCTCCTTTAAAGTTTGCGCCCAAAATAGGTGCCCAAAATTTAAAGGCGCTTTGTTAAGAACCTTTTTTCCAAAAAAAAAAAAACTTACATTGACAGCCACTGACATGACAAATTCAAAAATCGACATTGTCAATTGCTCATTGAAGACGTCCTGAAACAAGAAAATTATTTTGAAATCTCCAAAATTCAAATTCCCGCCAACCCTTTCCACTCACCCCACTCCACCATAGCACCGCATAGGCCGTAGTCATAATACACAACGGGACCGACGTTCCAAACCATGGCCAAATGAGCACTTTTAGGTACTGTAAATTTTTTTTTTTTAACTTTTGTTTGGCGCCAAATTCAAATTTTTTCATTTTTTTTAAATTGAGGTACCTTATATGCTGCATAGAGCAGTAACGCAGAGGTAAGGAGGTTGAGGATGGAAAAGATAACGCAGACAATTATGATGACATACATGGCTGGAATTTCAGACTTTTGGGAATTTTTAAATTTTTAAAAATTCCAAAAATTACCATTAGCTCTCCGCCGCTCCGGGGTTTCTGTATAGATCTGATACAAACCTGGAAATCTCGCCTGGAAGCCATCGATTCTGAAATTTTCAGAATTTTAAGAAAAACATTTTTTGTCTGAAATTAAAGACTTACGCCCCAGTGGCCGGCAATTGTCGATTCTCATATTCAGCCAGAATATTCTTCACCACCTGAAATTGCCATCCCAATATTCCAAATTGGATGAAGCAGTAAATCTGAAATTGTATTTTTGAAAATTTTTGTTTGGCGCCAAAATTTAAAGCTTACTATATTCCAAACAGCGATTGCTATAGTGGCACCCCGTAGGCAGTATAACGGGTCCGCCATTCAAAGGAGGCGGGAACTTGAATTTTGAATTCGTACCTGTAATATTAAAATTTAAGAATAAATTCTAAAAAAATTTGCATGAGTCACAAGATGT</canonical>
            <polymorphic>GTAGTTAGCAAAATTTAGGTAGCTTTTTCGATTCTTGAGATATGCTCCTTTAAAGTTTGCGCCCAAAATAGGTGCCCAAAATTTAAAGGCGCTTTGTTAAGAACCTTTTTTCCAAAAAAAAAAAAACTTACATTGACAGCCACTGACATGACAAATTCAAAAATCGACATTGTCAATTGCTCATTGAAGACGTCCTGAAACAAGAAAATTATTTTGAAATCTCCAAAATTCAAATTCCCGCCAACCCTTTCCACTCACCCCACTCCACCATAGCACCGCATAGGCCGTAGTCATAATACACAACGGGACCGACGTTCCAAACCATGGCCAAATGAGCACTTTTAGGTACTGTAAATTTTTTTTTTTTAACTTTTGTTTGGCGCCAAATTCAAATTTTTTCATTTTTTTTAAATTGAGGTACCTTATATGCTGCATAGAGCAGTAACGCAGAGGTAAGGAGGTTGAGGATGGAAAAGATAACGCAGACAATTATGATGACRTACATGGCTGGAATTTCAGACTTTTGGGAATTTTTAAATTTTTAAAAATTCCAAAAATTACCATTAGCTCTCCGCCGCTCCGGGGTTTCTGTATAGATCTGATACAAACCTGGAAATCTCGCCTGGAAGCCATCGATTCTGAAATTTTCAGAATTTTAAGAAAAACATTTTTTGTCTGAAATTAAAGACTTACGCCCCAGTGGCCGGCAATTGTCGATTCTCATATTCAGCCAGAATATTCTTCACCACCTGAAATTGCCATCCCAATATTCCAAATTGGATGAAGCAGTAAATCTGAAATTGTATTTTTGAAAATTTTTGTTTGGCGCCAAAATTTAAAGCTTACTATATTCCAAACAGCGATTGCTATAGTGGCACCCCGTAGGCAGTATAACGGGTCCGCCATTCAAAGGAGGCGGGAACTTGAATTTTGAATTCGTACCTGTAATATTAAAATTTAAGAATAAATTCTAAAAAAATTTGCATGAGTCACAAGATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAATGAGCACTTTTAGGTACTG</pcr_primer_p1>
		<pcr_primer_p2>GGAGAGCTAATGGTAATTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CAAATGAGCACTTTTAGGTACTGTAAATTTTTTTTTTTTAACTTTTGTTTGGCGCCAAATTCAAATTTTTTCATTTTTTTTAAATTGAGGTACCTTATATGCTGCATAGAGCAGTAACGCAGAGGTAAGGAGGTTGAGGATGGAAAAGATAACGCAGACAATTATGATGACATACATGGCTGGAATTTCAGACTTTTGGGAATTTTTAAATTTTTAAAAATTCCAAAAATTACCATTAGCTCTCC</canonical_amplicon>
		<polymorphic_amplicon>CAAATGAGCACTTTTAGGTACTGTAAATTTTTTTTTTTTAACTTTTGTTTGGCGCCAAATTCAAATTTTTTCATTTTTTTTAAATTGAGGTACCTTATATGCTGCATAGAGCAGTAACGCAGAGGTAAGGAGGTTGAGGATGGAAAAGATAACGCAGACAATTATGATGACRTACATGGCTGGAATTTCAGACTTTTGGGAATTTTTAAATTTTTAAAAATTCCAAAAATTACCATTAGCTCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2823</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>721371</contig_pos>
        <strand>+</strand>
        <context>GAATTTCAGA[C/T]TTTTGGGart</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAAGATAACGCAGACAATTATGATGACATACATGGCTGGAATTTCAGA</left_flank>
        <right_flank>TTTTGGGAATTTTTAAATTTTTAAAAATTCCAAAAATTACCATTAGCTCT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTTTTCGATTCTTGAGATATGCTCCTTTAAAGTTTGCGCCCAAAATAGGTGCCCAAAATTTAAAGGCGCTTTGTTAAGAACCTTTTTTCCAAAAAAAAAAAAACTTACATTGACAGCCACTGACATGACAAATTCAAAAATCGACATTGTCAATTGCTCATTGAAGACGTCCTGAAACAAGAAAATTATTTTGAAATCTCCAAAATTCAAATTCCCGCCAACCCTTTCCACTCACCCCACTCCACCATAGCACCGCATAGGCCGTAGTCATAATACACAACGGGACCGACGTTCCAAACCATGGCCAAATGAGCACTTTTAGGTACTGTAAATTTTTTTTTTTTAACTTTTGTTTGGCGCCAAATTCAAATTTTTTCATTTTTTTTAAATTGAGGTACCTTATATGCTGCATAGAGCAGTAACGCAGAGGTAAGGAGGTTGAGGATGGAAAAGATAACGCAGACAATTATGATGACATACATGGCTGGAATTTCAGACTTTTGGGAATTTTTAAATTTTTAAAAATTCCAAAAATTACCATTAGCTCTCCGCCGCTCCGGGGTTTCTGTATAGATCTGATACAAACCTGGAAATCTCGCCTGGAAGCCATCGATTCTGAAATTTTCAGAATTTTAAGAAAAACATTTTTTGTCTGAAATTAAAGACTTACGCCCCAGTGGCCGGCAATTGTCGATTCTCATATTCAGCCAGAATATTCTTCACCACCTGAAATTGCCATCCCAATATTCCAAATTGGATGAAGCAGTAAATCTGAAATTGTATTTTTGAAAATTTTTGTTTGGCGCCAAAATTTAAAGCTTACTATATTCCAAACAGCGATTGCTATAGTGGCACCCCGTAGGCAGTATAACGGGTCCGCCATTCAAAGGAGGCGGGAACTTGAATTTTGAATTCGTACCTGTAATATTAAAATTTAAGAATAAATTCTAAAAAAATTTGCATGAGTCACAAGATGTATATACAATTGGAGGAGAAAT</canonical>
            <polymorphic>GCTTTTTCGATTCTTGAGATATGCTCCTTTAAAGTTTGCGCCCAAAATAGGTGCCCAAAATTTAAAGGCGCTTTGTTAAGAACCTTTTTTCCAAAAAAAAAAAAACTTACATTGACAGCCACTGACATGACAAATTCAAAAATCGACATTGTCAATTGCTCATTGAAGACGTCCTGAAACAAGAAAATTATTTTGAAATCTCCAAAATTCAAATTCCCGCCAACCCTTTCCACTCACCCCACTCCACCATAGCACCGCATAGGCCGTAGTCATAATACACAACGGGACCGACGTTCCAAACCATGGCCAAATGAGCACTTTTAGGTACTGTAAATTTTTTTTTTTTAACTTTTGTTTGGCGCCAAATTCAAATTTTTTCATTTTTTTTAAATTGAGGTACCTTATATGCTGCATAGAGCAGTAACGCAGAGGTAAGGAGGTTGAGGATGGAAAAGATAACGCAGACAATTATGATGACATACATGGCTGGAATTTCAGAYTTTTGGGAATTTTTAAATTTTTAAAAATTCCAAAAATTACCATTAGCTCTCCGCCGCTCCGGGGTTTCTGTATAGATCTGATACAAACCTGGAAATCTCGCCTGGAAGCCATCGATTCTGAAATTTTCAGAATTTTAAGAAAAACATTTTTTGTCTGAAATTAAAGACTTACGCCCCAGTGGCCGGCAATTGTCGATTCTCATATTCAGCCAGAATATTCTTCACCACCTGAAATTGCCATCCCAATATTCCAAATTGGATGAAGCAGTAAATCTGAAATTGTATTTTTGAAAATTTTTGTTTGGCGCCAAAATTTAAAGCTTACTATATTCCAAACAGCGATTGCTATAGTGGCACCCCGTAGGCAGTATAACGGGTCCGCCATTCAAAGGAGGCGGGAACTTGAATTTTGAATTCGTACCTGTAATATTAAAATTTAAGAATAAATTCTAAAAAAATTTGCATGAGTCACAAGATGTATATACAATTGGAGGAGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAATGAGCACTTTTAGGTACTG</pcr_primer_p1>
		<pcr_primer_p2>CGGAGAGCTAATGGTAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAAATGAGCACTTTTAGGTACTGTAAATTTTTTTTTTTTAACTTTTGTTTGGCGCCAAATTCAAATTTTTTCATTTTTTTTAAATTGAGGTACCTTATATGCTGCATAGAGCAGTAACGCAGAGGTAAGGAGGTTGAGGATGGAAAAGATAACGCAGACAATTATGATGACATACATGGCTGGAATTTCAGACTTTTGGGAATTTTTAAATTTTTAAAAATTCCAAAAATTACCATTAGCTCTCCG</canonical_amplicon>
		<polymorphic_amplicon>CAAATGAGCACTTTTAGGTACTGTAAATTTTTTTTTTTTAACTTTTGTTTGGCGCCAAATTCAAATTTTTTCATTTTTTTTAAATTGAGGTACCTTATATGCTGCATAGAGCAGTAACGCAGAGGTAAGGAGGTTGAGGATGGAAAAGATAACGCAGACAATTATGATGACATACATGGCTGGAATTTCAGAYTTTTGGGAATTTTTAAATTTTTAAAAATTCCAAAAATTACCATTAGCTCTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2824</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>721380</contig_pos>
        <strand></strand>
        <context>AYTTTTGGGa[A/G]tttttaaatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGCAGACAATTATGATGACATACATGGCTGGAATTTCAGACTTTTGGGA</left_flank>
        <right_flank>TTTTTAAATTTTTAAAAATTCCAAAAATTACCATTAGCTCTCCGCCGCTC</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCTTGAGATATGCTCCTTTAAAGTTTGCGCCCAAAATAGGTGCCCAAAATTTAAAGGCGCTTTGTTAAGAACCTTTTTTCCAAAAAAAAAAAAACTTACATTGACAGCCACTGACATGACAAATTCAAAAATCGACATTGTCAATTGCTCATTGAAGACGTCCTGAAACAAGAAAATTATTTTGAAATCTCCAAAATTCAAATTCCCGCCAACCCTTTCCACTCACCCCACTCCACCATAGCACCGCATAGGCCGTAGTCATAATACACAACGGGACCGACGTTCCAAACCATGGCCAAATGAGCACTTTTAGGTACTGTAAATTTTTTTTTTTTAACTTTTGTTTGGCGCCAAATTCAAATTTTTTCATTTTTTTTAAATTGAGGTACCTTATATGCTGCATAGAGCAGTAACGCAGAGGTAAGGAGGTTGAGGATGGAAAAGATAACGCAGACAATTATGATGACATACATGGCTGGAATTTCAGACTTTTGGGAATTTTTAAATTTTTAAAAATTCCAAAAATTACCATTAGCTCTCCGCCGCTCCGGGGTTTCTGTATAGATCTGATACAAACCTGGAAATCTCGCCTGGAAGCCATCGATTCTGAAATTTTCAGAATTTTAAGAAAAACATTTTTTGTCTGAAATTAAAGACTTACGCCCCAGTGGCCGGCAATTGTCGATTCTCATATTCAGCCAGAATATTCTTCACCACCTGAAATTGCCATCCCAATATTCCAAATTGGATGAAGCAGTAAATCTGAAATTGTATTTTTGAAAATTTTTGTTTGGCGCCAAAATTTAAAGCTTACTATATTCCAAACAGCGATTGCTATAGTGGCACCCCGTAGGCAGTATAACGGGTCCGCCATTCAAAGGAGGCGGGAACTTGAATTTTGAATTCGTACCTGTAATATTAAAATTTAAGAATAAATTCTAAAAAAATTTGCATGAGTCACAAGATGTATATACAATTGGAGGAGAAATGTATGAAAT</canonical>
            <polymorphic>ATTCTTGAGATATGCTCCTTTAAAGTTTGCGCCCAAAATAGGTGCCCAAAATTTAAAGGCGCTTTGTTAAGAACCTTTTTTCCAAAAAAAAAAAAACTTACATTGACAGCCACTGACATGACAAATTCAAAAATCGACATTGTCAATTGCTCATTGAAGACGTCCTGAAACAAGAAAATTATTTTGAAATCTCCAAAATTCAAATTCCCGCCAACCCTTTCCACTCACCCCACTCCACCATAGCACCGCATAGGCCGTAGTCATAATACACAACGGGACCGACGTTCCAAACCATGGCCAAATGAGCACTTTTAGGTACTGTAAATTTTTTTTTTTTAACTTTTGTTTGGCGCCAAATTCAAATTTTTTCATTTTTTTTAAATTGAGGTACCTTATATGCTGCATAGAGCAGTAACGCAGAGGTAAGGAGGTTGAGGATGGAAAAGATAACGCAGACAATTATGATGACATACATGGCTGGAATTTCAGACTTTTGGGARTTTTTAAATTTTTAAAAATTCCAAAAATTACCATTAGCTCTCCGCCGCTCCGGGGTTTCTGTATAGATCTGATACAAACCTGGAAATCTCGCCTGGAAGCCATCGATTCTGAAATTTTCAGAATTTTAAGAAAAACATTTTTTGTCTGAAATTAAAGACTTACGCCCCAGTGGCCGGCAATTGTCGATTCTCATATTCAGCCAGAATATTCTTCACCACCTGAAATTGCCATCCCAATATTCCAAATTGGATGAAGCAGTAAATCTGAAATTGTATTTTTGAAAATTTTTGTTTGGCGCCAAAATTTAAAGCTTACTATATTCCAAACAGCGATTGCTATAGTGGCACCCCGTAGGCAGTATAACGGGTCCGCCATTCAAAGGAGGCGGGAACTTGAATTTTGAATTCGTACCTGTAATATTAAAATTTAAGAATAAATTCTAAAAAAATTTGCATGAGTCACAAGATGTATATACAATTGGAGGAGAAATGTATGAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>162 121 120 96 94 74 73 53 49 32 21 19 17 12 11 10 9 8 7 6 6</canonical_bands>
                <polymorphic_bands>162 121 120 96 94 74 73 53 49 32 25 21 19 12 11 10 9 7 6 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>121 94 87 77 74 49 45 32 32 29 29 28 24 24 24 21 21 21 20 19 19 17 15 12 11 10 9 9 8 7 6 6</canonical_bands>
                <polymorphic_bands>121 94 87 77 74 49 45 32 32 29 29 28 25 24 24 24 21 21 21 20 19 19 15 12 11 10 9 9 7 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAACGCAGACAATTATGATGAC</pcr_primer_p1>
		<pcr_primer_p2>GCTGAATATGAGAATCGACAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TAACGCAGACAATTATGATGACATACATGGCTGGAATTTCAGACTTTTGGGAATTTTTAAATTTTTAAAAATTCCAAAAATTACCATTAGCTCTCCGCCGCTCCGGGGTTTCTGTATAGATCTGATACAAACCTGGAAATCTCGCCTGGAAGCCATCGATTCTGAAATTTTCAGAATTTTAAGAAAAACATTTTTTGTCTGAAATTAAAGACTTACGCCCCAGTGGCCGGCAATTGTCGATTCTCATATTCAGC</canonical_amplicon>
		<polymorphic_amplicon>TAACGCAGACAATTATGATGACATACATGGCTGGAATTTCAGACTTTTGGGARTTTTTAAATTTTTAAAAATTCCAAAAATTACCATTAGCTCTCCGCCGCTCCGGGGTTTCTGTATAGATCTGATACAAACCTGGAAATCTCGCCTGGAAGCCATCGATTCTGAAATTTTCAGAATTTTAAGAAAAACATTTTTTGTCTGAAATTAAAGACTTACGCCCCAGTGGCCGGCAATTGTCGATTCTCATATTCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2845</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>721487</contig_pos>
        <strand>+</strand>
        <context>AAGCCATCGA[C/T]TCTGAAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTGTATAGATCTGATACAAACCTGGAAATCTCGCCTGGAAGCCATCGA</left_flank>
        <right_flank>TCTGAAATTTTCAGAATTTTAAGAAAAACATTTTTTGTCTGAAATTAAAG</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCCACTGACATGACAAATTCAAAAATCGACATTGTCAATTGCTCATTGAAGACGTCCTGAAACAAGAAAATTATTTTGAAATCTCCAAAATTCAAATTCCCGCCAACCCTTTCCACTCACCCCACTCCACCATAGCACCGCATAGGCCGTAGTCATAATACACAACGGGACCGACGTTCCAAACCATGGCCAAATGAGCACTTTTAGGTACTGTAAATTTTTTTTTTTTAACTTTTGTTTGGCGCCAAATTCAAATTTTTTCATTTTTTTTAAATTGAGGTACCTTATATGCTGCATAGAGCAGTAACGCAGAGGTAAGGAGGTTGAGGATGGAAAAGATAACGCAGACAATTATGATGACATACATGGCTGGAATTTCAGACTTTTGGGAATTTTTAAATTTTTAAAAATTCCAAAAATTACCATTAGCTCTCCGCCGCTCCGGGGTTTCTGTATAGATCTGATACAAACCTGGAAATCTCGCCTGGAAGCCATCGATTCTGAAATTTTCAGAATTTTAAGAAAAACATTTTTTGTCTGAAATTAAAGACTTACGCCCCAGTGGCCGGCAATTGTCGATTCTCATATTCAGCCAGAATATTCTTCACCACCTGAAATTGCCATCCCAATATTCCAAATTGGATGAAGCAGTAAATCTGAAATTGTATTTTTGAAAATTTTTGTTTGGCGCCAAAATTTAAAGCTTACTATATTCCAAACAGCGATTGCTATAGTGGCACCCCGTAGGCAGTATAACGGGTCCGCCATTCAAAGGAGGCGGGAACTTGAATTTTGAATTCGTACCTGTAATATTAAAATTTAAGAATAAATTCTAAAAAAATTTGCATGAGTCACAAGATGTATATACAATTGGAGGAGAAATGTATGAAATAAGAGAGAGAGAGAGAGAGAGAGAGAGACGCACAGAGGAAGAGAAAAGCAAACAAACAGTGCGGGTAGGCAGGTGAGCCGGAGAGTAGAGACGCGGACAAATTTTAT</canonical>
            <polymorphic>AGCCACTGACATGACAAATTCAAAAATCGACATTGTCAATTGCTCATTGAAGACGTCCTGAAACAAGAAAATTATTTTGAAATCTCCAAAATTCAAATTCCCGCCAACCCTTTCCACTCACCCCACTCCACCATAGCACCGCATAGGCCGTAGTCATAATACACAACGGGACCGACGTTCCAAACCATGGCCAAATGAGCACTTTTAGGTACTGTAAATTTTTTTTTTTTAACTTTTGTTTGGCGCCAAATTCAAATTTTTTCATTTTTTTTAAATTGAGGTACCTTATATGCTGCATAGAGCAGTAACGCAGAGGTAAGGAGGTTGAGGATGGAAAAGATAACGCAGACAATTATGATGACATACATGGCTGGAATTTCAGACTTTTGGGAATTTTTAAATTTTTAAAAATTCCAAAAATTACCATTAGCTCTCCGCCGCTCCGGGGTTTCTGTATAGATCTGATACAAACCTGGAAATCTCGCCTGGAAGCCATCGAYTCTGAAATTTTCAGAATTTTAAGAAAAACATTTTTTGTCTGAAATTAAAGACTTACGCCCCAGTGGCCGGCAATTGTCGATTCTCATATTCAGCCAGAATATTCTTCACCACCTGAAATTGCCATCCCAATATTCCAAATTGGATGAAGCAGTAAATCTGAAATTGTATTTTTGAAAATTTTTGTTTGGCGCCAAAATTTAAAGCTTACTATATTCCAAACAGCGATTGCTATAGTGGCACCCCGTAGGCAGTATAACGGGTCCGCCATTCAAAGGAGGCGGGAACTTGAATTTTGAATTCGTACCTGTAATATTAAAATTTAAGAATAAATTCTAAAAAAATTTGCATGAGTCACAAGATGTATATACAATTGGAGGAGAAATGTATGAAATAAGAGAGAGAGAGAGAGAGAGAGAGAGACGCACAGAGGAAGAGAAAAGCAAACAAACAGTGCGGGTAGGCAGGTGAGCCGGAGAGTAGAGACGCGGACAAATTTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>498 421 81</canonical_bands>
                <polymorphic_bands>579 421</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAATTACCATTAGCTCTCC</pcr_primer_p1>
		<pcr_primer_p2>CAATTTCAGATTTACTGCTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATTACCATTAGCTCTCCGCCGCTCCGGGGTTTCTGTATAGATCTGATACAAACCTGGAAATCTCGCCTGGAAGCCATCGATTCTGAAATTTTCAGAATTTTAAGAAAAACATTTTTTGTCTGAAATTAAAGACTTACGCCCCAGTGGCCGGCAATTGTCGATTCTCATATTCAGCCAGAATATTCTTCACCACCTGAAATTGCCATCCCAATATTCCAAATTGGATGAAGCAGTAAATCTGAAATTG</canonical_amplicon>
		<polymorphic_amplicon>CAAAAATTACCATTAGCTCTCCGCCGCTCCGGGGTTTCTGTATAGATCTGATACAAACCTGGAAATCTCGCCTGGAAGCCATCGAYTCTGAAATTTTCAGAATTTTAAGAAAAACATTTTTTGTCTGAAATTAAAGACTTACGCCCCAGTGGCCGGCAATTGTCGATTCTCATATTCAGCCAGAATATTCTTCACCACCTGAAATTGCCATCCCAATATTCCAAATTGGATGAAGCAGTAAATCTGAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2848</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>730241</contig_pos>
        <strand>-</strand>
        <context>TTTTCTGGAA[C/G]AATACTTTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAACCGTTGTCATTTGGAGGAAGGGGAACGGGTTGCCCATTTTTCTGGAA</left_flank>
        <right_flank>AATACTTTATTTTTGAAGGAGGAGGTGAAGAAAATGGTGCAAAAAGGTCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGACTTGAAATCCATTCGACAGTTTTTCGATAATTTCCATTGGAAGCCAAAGTTTTGAATTTCCGAAATGGTAATTGAGAAATTTGCAATGGTAGATTTCAGATAGGAGCTTTAAGAACTCCAGAATCCCAATATTTAGATAAATCCATCTTGGAGGGTTGTTCATTGGGAATTGAATAATTGAATGTCCCGTTCCCCAATAATCGATTAAATTCGTTCGAATTGTGGTATTTTTTCCCCAATCTCCGATTGTAATTTCTATTCGTTTTGGACTCAAAAATTCTATAGAGAATGCCTTGACCTTCAAATTTAGACTTTTTACGAATTCCGCGCTCTTTTTGGAGATTAGTGCGTAGCAAATTCTGGAAATTTCTAAAAACTCTAAGATGGAATCTTCTGACAACTCACTGCTCATGGAAATTGAATAGTCGAATCATTTGTCGTTGACTAACCGTTGTCATTTGGAGGAAGGGGAACGGGTTGCCCATTTTTCTGGAAGAATACTTTATTTTTGAAGGAGGAGGTGAAGAAAATGGTGCAAAAAGGTCAAAGTTGGGTTCTAGACAGTATCCCCTTGCAAGTTAAAAGAAGCAAAAAGAGTTTGGCGCACCGGGGAGTCGAACACCTGGGCTTGTGGGTGGAAGACAGAAGCGTAAACCACTACACCAACGCCCACAGTTAGGCGAGAAGCTGCGGAAGGCGTATAAGTAAGAGAGAGTACGTGGAGTGTGTGAGAGAGTTAGAGGAGGATGAGGGGTGAGGGGAAGGTAAAGATGAAGATGGTCCGATAACGTTAATTGTCTGTAACTCAGCTGAAAATGATCGGCGAGCTTTGGAAACTAGCTTGATCGATAGGGAATTGAATTTTACGTTAGATAAGATGTAGAAAATCTGAATAATCATGATTTAAAAGTCGAGAGAACTTATAAAGAAAATTTCGAAAATTCAAACTACTGTAACTCATTCCAAAACCCCCATGAAAGGTTGAAATATACTTCA</canonical>
            <polymorphic>TCGACTTGAAATCCATTCGACAGTTTTTCGATAATTTCCATTGGAAGCCAAAGTTTTGAATTTCCGAAATGGTAATTGAGAAATTTGCAATGGTAGATTTCAGATAGGAGCTTTAAGAACTCCAGAATCCCAATATTTAGATAAATCCATCTTGGAGGGTTGTTCATTGGGAATTGAATAATTGAATGTCCCGTTCCCCAATAATCGATTAAATTCGTTCGAATTGTGGTATTTTTTCCCCAATCTCCGATTGTAATTTCTATTCGTTTTGGACTCAAAAATTCTATAGAGAATGCCTTGACCTTCAAATTTAGACTTTTTACGAATTCCGCGCTCTTTTTGGAGATTAGTGCGTAGCAAATTCTGGAAATTTCTAAAAACTCTAAGATGGAATCTTCTGACAACTCACTGCTCATGGAAATTGAATAGTCGAATCATTTGTCGTTGACTAACCGTTGTCATTTGGAGGAAGGGGAACGGGTTGCCCATTTTTCTGGAASAATACTTTATTTTTGAAGGAGGAGGTGAAGAAAATGGTGCAAAAAGGTCAAAGTTGGGTTCTAGACAGTATCCCCTTGCAAGTTAAAAGAAGCAAAAAGAGTTTGGCGCACCGGGGAGTCGAACACCTGGGCTTGTGGGTGGAAGACAGAAGCGTAAACCACTACACCAACGCCCACAGTTAGGCGAGAAGCTGCGGAAGGCGTATAAGTAAGAGAGAGTACGTGGAGTGTGTGAGAGAGTTAGAGGAGGATGAGGGGTGAGGGGAAGGTAAAGATGAAGATGGTCCGATAACGTTAATTGTCTGTAACTCAGCTGAAAATGATCGGCGAGCTTTGGAAACTAGCTTGATCGATAGGGAATTGAATTTTACGTTAGATAAGATGTAGAAAATCTGAATAATCATGATTTAAAAGTCGAGAGAACTTATAAAGAAAATTTCGAAAATTCAAACTACTGTAACTCATTCCAAAACCCCCATGAAAGGTTGAAATATACTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGAATAGTCGAATCATTTGT</pcr_primer_p1>
		<pcr_primer_p2>GTAGTGGTTTACGCTTCTGTCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATTGAATAGTCGAATCATTTGTCGTTGACTAACCGTTGTCATTTGGAGGAAGGGGAACGGGTTGCCCATTTTTCTGGAAGAATACTTTATTTTTGAAGGAGGAGGTGAAGAAAATGGTGCAAAAAGGTCAAAGTTGGGTTCTAGACAGTATCCCCTTGCAAGTTAAAAGAAGCAAAAAGAGTTTGGCGCACCGGGGAGTCGAACACCTGGGCTTGTGGGTGGAAGACAGAAGCGTAAACCACTAC</canonical_amplicon>
		<polymorphic_amplicon>AATTGAATAGTCGAATCATTTGTCGTTGACTAACCGTTGTCATTTGGAGGAAGGGGAACGGGTTGCCCATTTTTCTGGAASAATACTTTATTTTTGAAGGAGGAGGTGAAGAAAATGGTGCAAAAAGGTCAAAGTTGGGTTCTAGACAGTATCCCCTTGCAAGTTAAAAGAAGCAAAAAGAGTTTGGCGCACCGGGGAGTCGAACACCTGGGCTTGTGGGTGGAAGACAGAAGCGTAAACCACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2849</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>730108</contig_pos>
        <strand>-</strand>
        <context>GCAAATTCTG[C/T/G/A]AAATTTCTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T/G/A</alleles>
        <left_flank>TTTTTACGAATTCCGCGCTCTTTTTGGAGATTAGTGCGTAGCAAATTCTG</left_flank>
        <right_flank>AAATTTCTAAAAACTCTAAGATGGAATCTTCTGACAACTCACTGCTCATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGATGTAAACGATTTCTTCATATTCTCGCGTAGTTAGAGCAAAATTACCAAGAATAGAAAGATCATTTACTGGAAGATGATACTTTAGAATTCTCCTGATGTCTTTAAGTTTATTTGTAATAGCAAGAGTGTCGACTTGAAATCCATTCGACAGTTTTTCGATAATTTCCATTGGAAGCCAAAGTTTTGAATTTCCGAAATGGTAATTGAGAAATTTGCAATGGTAGATTTCAGATAGGAGCTTTAAGAACTCCAGAATCCCAATATTTAGATAAATCCATCTTGGAGGGTTGTTCATTGGGAATTGAATAATTGAATGTCCCGTTCCCCAATAATCGATTAAATTCGTTCGAATTGTGGTATTTTTTCCCCAATCTCCGATTGTAATTTCTATTCGTTTTGGACTCAAAAATTCTATAGAGAATGCCTTGACCTTCAAATTTAGACTTTTTACGAATTCCGCGCTCTTTTTGGAGATTAGTGCGTAGCAAATTCTGGAAATTTCTAAAAACTCTAAGATGGAATCTTCTGACAACTCACTGCTCATGGAAATTGAATAGTCGAATCATTTGTCGTTGACTAACCGTTGTCATTTGGAGGAAGGGGAACGGGTTGCCCATTTTTCTGGAAGAATACTTTATTTTTGAAGGAGGAGGTGAAGAAAATGGTGCAAAAAGGTCAAAGTTGGGTTCTAGACAGTATCCCCTTGCAAGTTAAAAGAAGCAAAAAGAGTTTGGCGCACCGGGGAGTCGAACACCTGGGCTTGTGGGTGGAAGACAGAAGCGTAAACCACTACACCAACGCCCACAGTTAGGCGAGAAGCTGCGGAAGGCGTATAAGTAAGAGAGAGTACGTGGAGTGTGTGAGAGAGTTAGAGGAGGATGAGGGGTGAGGGGAAGGTAAAGATGAAGATGGTCCGATAACGTTAATTGTCTGTAACTCAGCTGAAAATGATCGGCGAGCTTTGGAAACTAGCTTGATCGATAGGGAATTGAATT</canonical>
            <polymorphic>CCAGATGTAAACGATTTCTTCATATTCTCGCGTAGTTAGAGCAAAATTACCAAGAATAGAAAGATCATTTACTGGAAGATGATACTTTAGAATTCTCCTGATGTCTTTAAGTTTATTTGTAATAGCAAGAGTGTCGACTTGAAATCCATTCGACAGTTTTTCGATAATTTCCATTGGAAGCCAAAGTTTTGAATTTCCGAAATGGTAATTGAGAAATTTGCAATGGTAGATTTCAGATAGGAGCTTTAAGAACTCCAGAATCCCAATATTTAGATAAATCCATCTTGGAGGGTTGTTCATTGGGAATTGAATAATTGAATGTCCCGTTCCCCAATAATCGATTAAATTCGTTCGAATTGTGGTATTTTTTCCCCAATCTCCGATTGTAATTTCTATTCGTTTTGGACTCAAAAATTCTATAGAGAATGCCTTGACCTTCAAATTTAGACTTTTTACGAATTCCGCGCTCTTTTTGGAGATTAGTGCGTAGCAAATTCTGYAAATTTCTAAAAACTCTAAGATGGAATCTTCTGACAACTCACTGCTCATGGAAATTGAATAGTCGAATCATTTGTCGTTGACTAACCGTTGTCATTTGGAGGAAGGGGAACGGGTTGCCCATTTTTCTGGAAGAATACTTTATTTTTGAAGGAGGAGGTGAAGAAAATGGTGCAAAAAGGTCAAAGTTGGGTTCTAGACAGTATCCCCTTGCAAGTTAAAAGAAGCAAAAAGAGTTTGGCGCACCGGGGAGTCGAACACCTGGGCTTGTGGGTGGAAGACAGAAGCGTAAACCACTACACCAACGCCCACAGTTAGGCGAGAAGCTGCGGAAGGCGTATAAGTAAGAGAGAGTACGTGGAGTGTGTGAGAGAGTTAGAGGAGGATGAGGGGTGAGGGGAAGGTAAAGATGAAGATGGTCCGATAACGTTAATTGTCTGTAACTCAGCTGAAAATGATCGGCGAGCTTTGGAAACTAGCTTGATCGATAGGGAATTGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>306 242 158 130 97 67</canonical_bands>
                <polymorphic_bands>372 306 158 97 67</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTATAGAGAATGCCTTGACC</pcr_primer_p1>
		<pcr_primer_p2>CCTCCTCCTTCAAAAATAAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTCTATAGAGAATGCCTTGACCTTCAAATTTAGACTTTTTACGAATTCCGCGCTCTTTTTGGAGATTAGTGCGTAGCAAATTCTGGAAATTTCTAAAAACTCTAAGATGGAATCTTCTGACAACTCACTGCTCATGGAAATTGAATAGTCGAATCATTTGTCGTTGACTAACCGTTGTCATTTGGAGGAAGGGGAACGGGTTGCCCATTTTTCTGGAAGAATACTTTATTTTTGAAGGAGGAGG</canonical_amplicon>
		<polymorphic_amplicon>TTCTATAGAGAATGCCTTGACCTTCAAATTTAGACTTTTTACGAATTCCGCGCTCTTTTTGGAGATTAGTGCGTAGCAAATTCTGYAAATTTCTAAAAACTCTAAGATGGAATCTTCTGACAACTCACTGCTCATGGAAATTGAATAGTCGAATCATTTGTCGTTGACTAACCGTTGTCATTTGGAGGAAGGGGAACGGGTTGCCCATTTTTCTGGAAGAATACTTTATTTTTGAAGGAGGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2850</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>730065</contig_pos>
        <strand>-</strand>
        <context>GACTTTTTAC[C/T/G/A]AATTCCGCGC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T/G/A</alleles>
        <left_flank>CTCAAAAATTCTATAGAGAATGCCTTGACCTTCAAATTTAGACTTTTTAC</left_flank>
        <right_flank>AATTCCGCGCTCTTTTTGGAGATTAGTGCGTAGCAAATTCTGGAAATTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTCGTAAAGATGGAAAAATGCTAGTAATAAGTAATCATATTCCCAGATGTAAACGATTTCTTCATATTCTCGCGTAGTTAGAGCAAAATTACCAAGAATAGAAAGATCATTTACTGGAAGATGATACTTTAGAATTCTCCTGATGTCTTTAAGTTTATTTGTAATAGCAAGAGTGTCGACTTGAAATCCATTCGACAGTTTTTCGATAATTTCCATTGGAAGCCAAAGTTTTGAATTTCCGAAATGGTAATTGAGAAATTTGCAATGGTAGATTTCAGATAGGAGCTTTAAGAACTCCAGAATCCCAATATTTAGATAAATCCATCTTGGAGGGTTGTTCATTGGGAATTGAATAATTGAATGTCCCGTTCCCCAATAATCGATTAAATTCGTTCGAATTGTGGTATTTTTTCCCCAATCTCCGATTGTAATTTCTATTCGTTTTGGACTCAAAAATTCTATAGAGAATGCCTTGACCTTCAAATTTAGACTTTTTACGAATTCCGCGCTCTTTTTGGAGATTAGTGCGTAGCAAATTCTGGAAATTTCTAAAAACTCTAAGATGGAATCTTCTGACAACTCACTGCTCATGGAAATTGAATAGTCGAATCATTTGTCGTTGACTAACCGTTGTCATTTGGAGGAAGGGGAACGGGTTGCCCATTTTTCTGGAAGAATACTTTATTTTTGAAGGAGGAGGTGAAGAAAATGGTGCAAAAAGGTCAAAGTTGGGTTCTAGACAGTATCCCCTTGCAAGTTAAAAGAAGCAAAAAGAGTTTGGCGCACCGGGGAGTCGAACACCTGGGCTTGTGGGTGGAAGACAGAAGCGTAAACCACTACACCAACGCCCACAGTTAGGCGAGAAGCTGCGGAAGGCGTATAAGTAAGAGAGAGTACGTGGAGTGTGTGAGAGAGTTAGAGGAGGATGAGGGGTGAGGGGAAGGTAAAGATGAAGATGGTCCGATAACGTTAATTGTCTGTAACTCAGCTGAAAATGAT</canonical>
            <polymorphic>AGTCGTAAAGATGGAAAAATGCTAGTAATAAGTAATCATATTCCCAGATGTAAACGATTTCTTCATATTCTCGCGTAGTTAGAGCAAAATTACCAAGAATAGAAAGATCATTTACTGGAAGATGATACTTTAGAATTCTCCTGATGTCTTTAAGTTTATTTGTAATAGCAAGAGTGTCGACTTGAAATCCATTCGACAGTTTTTCGATAATTTCCATTGGAAGCCAAAGTTTTGAATTTCCGAAATGGTAATTGAGAAATTTGCAATGGTAGATTTCAGATAGGAGCTTTAAGAACTCCAGAATCCCAATATTTAGATAAATCCATCTTGGAGGGTTGTTCATTGGGAATTGAATAATTGAATGTCCCGTTCCCCAATAATCGATTAAATTCGTTCGAATTGTGGTATTTTTTCCCCAATCTCCGATTGTAATTTCTATTCGTTTTGGACTCAAAAATTCTATAGAGAATGCCTTGACCTTCAAATTTAGACTTTTTACYAATTCCGCGCTCTTTTTGGAGATTAGTGCGTAGCAAATTCTGGAAATTTCTAAAAACTCTAAGATGGAATCTTCTGACAACTCACTGCTCATGGAAATTGAATAGTCGAATCATTTGTCGTTGACTAACCGTTGTCATTTGGAGGAAGGGGAACGGGTTGCCCATTTTTCTGGAAGAATACTTTATTTTTGAAGGAGGAGGTGAAGAAAATGGTGCAAAAAGGTCAAAGTTGGGTTCTAGACAGTATCCCCTTGCAAGTTAAAAGAAGCAAAAAGAGTTTGGCGCACCGGGGAGTCGAACACCTGGGCTTGTGGGTGGAAGACAGAAGCGTAAACCACTACACCAACGCCCACAGTTAGGCGAGAAGCTGCGGAAGGCGTATAAGTAAGAGAGAGTACGTGGAGTGTGTGAGAGAGTTAGAGGAGGATGAGGGGTGAGGGGAAGGTAAAGATGAAGATGGTCCGATAACGTTAATTGTCTGTAACTCAGCTGAAAATGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>456 133 130 101 68 35 28 23 17 9</canonical_bands>
                <polymorphic_bands>456 133 130 101 68 52 28 23 9</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>500 367 133</canonical_bands>
                <polymorphic_bands>867 133</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTCATTGGGAATTGAATAAT</pcr_primer_p1>
		<pcr_primer_p2>TGTCAGAAGATTCCATCTTAGAG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TGTTCATTGGGAATTGAATAATTGAATGTCCCGTTCCCCAATAATCGATTAAATTCGTTCGAATTGTGGTATTTTTTCCCCAATCTCCGATTGTAATTTCTATTCGTTTTGGACTCAAAAATTCTATAGAGAATGCCTTGACCTTCAAATTTAGACTTTTTACGAATTCCGCGCTCTTTTTGGAGATTAGTGCGTAGCAAATTCTGGAAATTTCTAAAAACTCTAAGATGGAATCTTCTGACA</canonical_amplicon>
		<polymorphic_amplicon>TGTTCATTGGGAATTGAATAATTGAATGTCCCGTTCCCCAATAATCGATTAAATTCGTTCGAATTGTGGTATTTTTTCCCCAATCTCCGATTGTAATTTCTATTCGTTTTGGACTCAAAAATTCTATAGAGAATGCCTTGACCTTCAAATTTAGACTTTTTACYAATTCCGCGCTCTTTTTGGAGATTAGTGCGTAGCAAATTCTGGAAATTTCTAAAAACTCTAAGATGGAATCTTCTGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2851</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>729946</contig_pos>
        <strand>-</strand>
        <context>TCCCCAATAW[A/G/T/C]CGATTAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G/T/C</alleles>
        <left_flank>GAGGGTTGTTCATTGGGAATTGAATAATTGAATGTCCCGTTCCCCAATAA</left_flank>
        <right_flank>CGATTAAATTCGTTCGAATTGTGGTATTTTTTCCCCAATCTCCGATTGTA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATTTCGGATAAGTTTCAGATTGGGTCCATTTTTTGAGAAACTGGTTGAAAATTCTTGGAAGATTTTCTCTGATATAAAGAAACTCCAAATGACAGGTCTTAAATTGCAAAAAGCTAAAGTCGTAAAGATGGAAAAATGCTAGTAATAAGTAATCATATTCCCAGATGTAAACGATTTCTTCATATTCTCGCGTAGTTAGAGCAAAATTACCAAGAATAGAAAGATCATTTACTGGAAGATGATACTTTAGAATTCTCCTGATGTCTTTAAGTTTATTTGTAATAGCAAGAGTGTCGACTTGAAATCCATTCGACAGTTTTTCGATAATTTCCATTGGAAGCCAAAGTTTTGAATTTCCGAAATGGTAATTGAGAAATTTGCAATGGTAGATTTCAGATAGGAGCTTTAAGAACTCCAGAATCCCAATATTTAGATAAATCCATCTTGGAGGGTTGTTCATTGGGAATTGAATAATTGAATGTCCCGTTCCCCAATAATCGATTAAATTCGTTCGAATTGTGGTATTTTTTCCCCAATCTCCGATTGTAATTTCTATTCGTTTTGGACTCAAAAATTCTATAGAGAATGCCTTGACCTTCAAATTTAGACTTTTTACGAATTCCGCGCTCTTTTTGGAGATTAGTGCGTAGCAAATTCTGGAAATTTCTAAAAACTCTAAGATGGAATCTTCTGACAACTCACTGCTCATGGAAATTGAATAGTCGAATCATTTGTCGTTGACTAACCGTTGTCATTTGGAGGAAGGGGAACGGGTTGCCCATTTTTCTGGAAGAATACTTTATTTTTGAAGGAGGAGGTGAAGAAAATGGTGCAAAAAGGTCAAAGTTGGGTTCTAGACAGTATCCCCTTGCAAGTTAAAAGAAGCAAAAAGAGTTTGGCGCACCGGGGAGTCGAACACCTGGGCTTGTGGGTGGAAGACAGAAGCGTAAACCACTACACCAACGCCCACAGTTAGGCGAGAAGCTGCGGAAGGCGTA</canonical>
            <polymorphic>CAATTTCGGATAAGTTTCAGATTGGGTCCATTTTTTGAGAAACTGGTTGAAAATTCTTGGAAGATTTTCTCTGATATAAAGAAACTCCAAATGACAGGTCTTAAATTGCAAAAAGCTAAAGTCGTAAAGATGGAAAAATGCTAGTAATAAGTAATCATATTCCCAGATGTAAACGATTTCTTCATATTCTCGCGTAGTTAGAGCAAAATTACCAAGAATAGAAAGATCATTTACTGGAAGATGATACTTTAGAATTCTCCTGATGTCTTTAAGTTTATTTGTAATAGCAAGAGTGTCGACTTGAAATCCATTCGACAGTTTTTCGATAATTTCCATTGGAAGCCAAAGTTTTGAATTTCCGAAATGGTAATTGAGAAATTTGCAATGGTAGATTTCAGATAGGAGCTTTAAGAACTCCAGAATCCCAATATTTAGATAAATCCATCTTGGAGGGTTGTTCATTGGGAATTGAATAATTGAATGTCCCGTTCCCCAATAARCGATTAAATTCGTTCGAATTGTGGTATTTTTTCCCCAATCTCCGATTGTAATTTCTATTCGTTTTGGACTCAAAAATTCTATAGAGAATGCCTTGACCTTCAAATTTAGACTTTTTACGAATTCCGCGCTCTTTTTGGAGATTAGTGCGTAGCAAATTCTGGAAATTTCTAAAAACTCTAAGATGGAATCTTCTGACAACTCACTGCTCATGGAAATTGAATAGTCGAATCATTTGTCGTTGACTAACCGTTGTCATTTGGAGGAAGGGGAACGGGTTGCCCATTTTTCTGGAAGAATACTTTATTTTTGAAGGAGGAGGTGAAGAAAATGGTGCAAAAAGGTCAAAGTTGGGTTCTAGACAGTATCCCCTTGCAAGTTAAAAGAAGCAAAAAGAGTTTGGCGCACCGGGGAGTCGAACACCTGGGCTTGTGGGTGGAAGACAGAAGCGTAAACCACTACACCAACGCCCACAGTTAGGCGAGAAGCTGCGGAAGGCGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>297 211 189 177 85 16 14 11</canonical_bands>
                <polymorphic_bands>297 211 191 189 85 16 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGAGAAATTTGCAATGGTAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAGTCTAAATTTGAAGGTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTGAGAAATTTGCAATGGTAGATTTCAGATAGGAGCTTTAAGAACTCCAGAATCCCAATATTTAGATAAATCCATCTTGGAGGGTTGTTCATTGGGAATTGAATAATTGAATGTCCCGTTCCCCAATAATCGATTAAATTCGTTCGAATTGTGGTATTTTTTCCCCAATCTCCGATTGTAATTTCTATTCGTTTTGGACTCAAAAATTCTATAGAGAATGCCTTGACCTTCAAATTTAGACTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTGAGAAATTTGCAATGGTAGATTTCAGATAGGAGCTTTAAGAACTCCAGAATCCCAATATTTAGATAAATCCATCTTGGAGGGTTGTTCATTGGGAATTGAATAATTGAATGTCCCGTTCCCCAATAARCGATTAAATTCGTTCGAATTGTGGTATTTTTTCCCCAATCTCCGATTGTAATTTCTATTCGTTTTGGACTCAAAAATTCTATAGAGAATGCCTTGACCTTCAAATTTAGACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2852</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>729945</contig_pos>
        <strand>-</strand>
        <context>TTCCCCAATA[A/T]RCGATTAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAGGGTTGTTCATTGGGAATTGAATAATTGAATGTCCCGTTCCCCAATA</left_flank>
        <right_flank>TCGATTAAATTCGTTCGAATTGTGGTATTTTTTCCCCAATCTCCGATTGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAATTTCGGATAAGTTTCAGATTGGGTCCATTTTTTGAGAAACTGGTTGAAAATTCTTGGAAGATTTTCTCTGATATAAAGAAACTCCAAATGACAGGTCTTAAATTGCAAAAAGCTAAAGTCGTAAAGATGGAAAAATGCTAGTAATAAGTAATCATATTCCCAGATGTAAACGATTTCTTCATATTCTCGCGTAGTTAGAGCAAAATTACCAAGAATAGAAAGATCATTTACTGGAAGATGATACTTTAGAATTCTCCTGATGTCTTTAAGTTTATTTGTAATAGCAAGAGTGTCGACTTGAAATCCATTCGACAGTTTTTCGATAATTTCCATTGGAAGCCAAAGTTTTGAATTTCCGAAATGGTAATTGAGAAATTTGCAATGGTAGATTTCAGATAGGAGCTTTAAGAACTCCAGAATCCCAATATTTAGATAAATCCATCTTGGAGGGTTGTTCATTGGGAATTGAATAATTGAATGTCCCGTTCCCCAATAATCGATTAAATTCGTTCGAATTGTGGTATTTTTTCCCCAATCTCCGATTGTAATTTCTATTCGTTTTGGACTCAAAAATTCTATAGAGAATGCCTTGACCTTCAAATTTAGACTTTTTACGAATTCCGCGCTCTTTTTGGAGATTAGTGCGTAGCAAATTCTGGAAATTTCTAAAAACTCTAAGATGGAATCTTCTGACAACTCACTGCTCATGGAAATTGAATAGTCGAATCATTTGTCGTTGACTAACCGTTGTCATTTGGAGGAAGGGGAACGGGTTGCCCATTTTTCTGGAAGAATACTTTATTTTTGAAGGAGGAGGTGAAGAAAATGGTGCAAAAAGGTCAAAGTTGGGTTCTAGACAGTATCCCCTTGCAAGTTAAAAGAAGCAAAAAGAGTTTGGCGCACCGGGGAGTCGAACACCTGGGCTTGTGGGTGGAAGACAGAAGCGTAAACCACTACACCAACGCCCACAGTTAGGCGAGAAGCTGCGGAAGGCGT</canonical>
            <polymorphic>TCAATTTCGGATAAGTTTCAGATTGGGTCCATTTTTTGAGAAACTGGTTGAAAATTCTTGGAAGATTTTCTCTGATATAAAGAAACTCCAAATGACAGGTCTTAAATTGCAAAAAGCTAAAGTCGTAAAGATGGAAAAATGCTAGTAATAAGTAATCATATTCCCAGATGTAAACGATTTCTTCATATTCTCGCGTAGTTAGAGCAAAATTACCAAGAATAGAAAGATCATTTACTGGAAGATGATACTTTAGAATTCTCCTGATGTCTTTAAGTTTATTTGTAATAGCAAGAGTGTCGACTTGAAATCCATTCGACAGTTTTTCGATAATTTCCATTGGAAGCCAAAGTTTTGAATTTCCGAAATGGTAATTGAGAAATTTGCAATGGTAGATTTCAGATAGGAGCTTTAAGAACTCCAGAATCCCAATATTTAGATAAATCCATCTTGGAGGGTTGTTCATTGGGAATTGAATAATTGAATGTCCCGTTCCCCAATAWTCGATTAAATTCGTTCGAATTGTGGTATTTTTTCCCCAATCTCCGATTGTAATTTCTATTCGTTTTGGACTCAAAAATTCTATAGAGAATGCCTTGACCTTCAAATTTAGACTTTTTACGAATTCCGCGCTCTTTTTGGAGATTAGTGCGTAGCAAATTCTGGAAATTTCTAAAAACTCTAAGATGGAATCTTCTGACAACTCACTGCTCATGGAAATTGAATAGTCGAATCATTTGTCGTTGACTAACCGTTGTCATTTGGAGGAAGGGGAACGGGTTGCCCATTTTTCTGGAAGAATACTTTATTTTTGAAGGAGGAGGTGAAGAAAATGGTGCAAAAAGGTCAAAGTTGGGTTCTAGACAGTATCCCCTTGCAAGTTAAAAGAAGCAAAAAGAGTTTGGCGCACCGGGGAGTCGAACACCTGGGCTTGTGGGTGGAAGACAGAAGCGTAAACCACTACACCAACGCCCACAGTTAGGCGAGAAGCTGCGGAAGGCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGAGAAATTTGCAATGGTAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAGTCTAAATTTGAAGGTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTGAGAAATTTGCAATGGTAGATTTCAGATAGGAGCTTTAAGAACTCCAGAATCCCAATATTTAGATAAATCCATCTTGGAGGGTTGTTCATTGGGAATTGAATAATTGAATGTCCCGTTCCCCAATAATCGATTAAATTCGTTCGAATTGTGGTATTTTTTCCCCAATCTCCGATTGTAATTTCTATTCGTTTTGGACTCAAAAATTCTATAGAGAATGCCTTGACCTTCAAATTTAGACTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTGAGAAATTTGCAATGGTAGATTTCAGATAGGAGCTTTAAGAACTCCAGAATCCCAATATTTAGATAAATCCATCTTGGAGGGTTGTTCATTGGGAATTGAATAATTGAATGTCCCGTTCCCCAATAWTCGATTAAATTCGTTCGAATTGTGGTATTTTTTCCCCAATCTCCGATTGTAATTTCTATTCGTTTTGGACTCAAAAATTCTATAGAGAATGCCTTGACCTTCAAATTTAGACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2853</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>729930</contig_pos>
        <strand>-</strand>
        <context>TAATTGAATG[A/G/T/C]CCCGTTCCCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G/T/C</alleles>
        <left_flank>AGATAAATCCATCTTGGAGGGTTGTTCATTGGGAATTGAATAATTGAATG</left_flank>
        <right_flank>CCCGTTCCCCAATAATCGATTAAATTCGTTCGAATTGTGGTATTTTTTCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATCATCATGGATTTCAATTTCGGATAAGTTTCAGATTGGGTCCATTTTTTGAGAAACTGGTTGAAAATTCTTGGAAGATTTTCTCTGATATAAAGAAACTCCAAATGACAGGTCTTAAATTGCAAAAAGCTAAAGTCGTAAAGATGGAAAAATGCTAGTAATAAGTAATCATATTCCCAGATGTAAACGATTTCTTCATATTCTCGCGTAGTTAGAGCAAAATTACCAAGAATAGAAAGATCATTTACTGGAAGATGATACTTTAGAATTCTCCTGATGTCTTTAAGTTTATTTGTAATAGCAAGAGTGTCGACTTGAAATCCATTCGACAGTTTTTCGATAATTTCCATTGGAAGCCAAAGTTTTGAATTTCCGAAATGGTAATTGAGAAATTTGCAATGGTAGATTTCAGATAGGAGCTTTAAGAACTCCAGAATCCCAATATTTAGATAAATCCATCTTGGAGGGTTGTTCATTGGGAATTGAATAATTGAATGTCCCGTTCCCCAATAATCGATTAAATTCGTTCGAATTGTGGTATTTTTTCCCCAATCTCCGATTGTAATTTCTATTCGTTTTGGACTCAAAAATTCTATAGAGAATGCCTTGACCTTCAAATTTAGACTTTTTACGAATTCCGCGCTCTTTTTGGAGATTAGTGCGTAGCAAATTCTGGAAATTTCTAAAAACTCTAAGATGGAATCTTCTGACAACTCACTGCTCATGGAAATTGAATAGTCGAATCATTTGTCGTTGACTAACCGTTGTCATTTGGAGGAAGGGGAACGGGTTGCCCATTTTTCTGGAAGAATACTTTATTTTTGAAGGAGGAGGTGAAGAAAATGGTGCAAAAAGGTCAAAGTTGGGTTCTAGACAGTATCCCCTTGCAAGTTAAAAGAAGCAAAAAGAGTTTGGCGCACCGGGGAGTCGAACACCTGGGCTTGTGGGTGGAAGACAGAAGCGTAAACCACTACACCAACGCCCACAGTTAGGCGAGA</canonical>
            <polymorphic>TGATCATCATGGATTTCAATTTCGGATAAGTTTCAGATTGGGTCCATTTTTTGAGAAACTGGTTGAAAATTCTTGGAAGATTTTCTCTGATATAAAGAAACTCCAAATGACAGGTCTTAAATTGCAAAAAGCTAAAGTCGTAAAGATGGAAAAATGCTAGTAATAAGTAATCATATTCCCAGATGTAAACGATTTCTTCATATTCTCGCGTAGTTAGAGCAAAATTACCAAGAATAGAAAGATCATTTACTGGAAGATGATACTTTAGAATTCTCCTGATGTCTTTAAGTTTATTTGTAATAGCAAGAGTGTCGACTTGAAATCCATTCGACAGTTTTTCGATAATTTCCATTGGAAGCCAAAGTTTTGAATTTCCGAAATGGTAATTGAGAAATTTGCAATGGTAGATTTCAGATAGGAGCTTTAAGAACTCCAGAATCCCAATATTTAGATAAATCCATCTTGGAGGGTTGTTCATTGGGAATTGAATAATTGAATGRCCCGTTCCCCAATAATCGATTAAATTCGTTCGAATTGTGGTATTTTTTCCCCAATCTCCGATTGTAATTTCTATTCGTTTTGGACTCAAAAATTCTATAGAGAATGCCTTGACCTTCAAATTTAGACTTTTTACGAATTCCGCGCTCTTTTTGGAGATTAGTGCGTAGCAAATTCTGGAAATTTCTAAAAACTCTAAGATGGAATCTTCTGACAACTCACTGCTCATGGAAATTGAATAGTCGAATCATTTGTCGTTGACTAACCGTTGTCATTTGGAGGAAGGGGAACGGGTTGCCCATTTTTCTGGAAGAATACTTTATTTTTGAAGGAGGAGGTGAAGAAAATGGTGCAAAAAGGTCAAAGTTGGGTTCTAGACAGTATCCCCTTGCAAGTTAAAAGAAGCAAAAAGAGTTTGGCGCACCGGGGAGTCGAACACCTGGGCTTGTGGGTGGAAGACAGAAGCGTAAACCACTACACCAACGCCCACAGTTAGGCGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGAGAAATTTGCAATGGTAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAGTCTAAATTTGAAGGTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTGAGAAATTTGCAATGGTAGATTTCAGATAGGAGCTTTAAGAACTCCAGAATCCCAATATTTAGATAAATCCATCTTGGAGGGTTGTTCATTGGGAATTGAATAATTGAATGTCCCGTTCCCCAATAATCGATTAAATTCGTTCGAATTGTGGTATTTTTTCCCCAATCTCCGATTGTAATTTCTATTCGTTTTGGACTCAAAAATTCTATAGAGAATGCCTTGACCTTCAAATTTAGACTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTGAGAAATTTGCAATGGTAGATTTCAGATAGGAGCTTTAAGAACTCCAGAATCCCAATATTTAGATAAATCCATCTTGGAGGGTTGTTCATTGGGAATTGAATAATTGAATGRCCCGTTCCCCAATAATCGATTAAATTCGTTCGAATTGTGGTATTTTTTCCCCAATCTCCGATTGTAATTTCTATTCGTTTTGGACTCAAAAATTCTATAGAGAATGCCTTGACCTTCAAATTTAGACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2854</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>729848</contig_pos>
        <strand>-</strand>
        <context>ATTTCAGATA[C/T/G/A]GAGCTTTAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T/G/A</alleles>
        <left_flank>TGAATTTCCGAAATGGTAATTGAGAAATTTGCAATGGTAGATTTCAGATA</left_flank>
        <right_flank>GAGCTTTAAGAACTCCAGAATCCCAATATTTAGATAAATCCATCTTGGAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTGAGTATTCGGCAAGCGTTTATACTGTACGCCTTCTAGAATCGTATCAATCTCAGCACCAAAACCGGGACACTCCCATCTGATCATCATGGATTTCAATTTCGGATAAGTTTCAGATTGGGTCCATTTTTTGAGAAACTGGTTGAAAATTCTTGGAAGATTTTCTCTGATATAAAGAAACTCCAAATGACAGGTCTTAAATTGCAAAAAGCTAAAGTCGTAAAGATGGAAAAATGCTAGTAATAAGTAATCATATTCCCAGATGTAAACGATTTCTTCATATTCTCGCGTAGTTAGAGCAAAATTACCAAGAATAGAAAGATCATTTACTGGAAGATGATACTTTAGAATTCTCCTGATGTCTTTAAGTTTATTTGTAATAGCAAGAGTGTCGACTTGAAATCCATTCGACAGTTTTTCGATAATTTCCATTGGAAGCCAAAGTTTTGAATTTCCGAAATGGTAATTGAGAAATTTGCAATGGTAGATTTCAGATAGGAGCTTTAAGAACTCCAGAATCCCAATATTTAGATAAATCCATCTTGGAGGGTTGTTCATTGGGAATTGAATAATTGAATGTCCCGTTCCCCAATAATCGATTAAATTCGTTCGAATTGTGGTATTTTTTCCCCAATCTCCGATTGTAATTTCTATTCGTTTTGGACTCAAAAATTCTATAGAGAATGCCTTGACCTTCAAATTTAGACTTTTTACGAATTCCGCGCTCTTTTTGGAGATTAGTGCGTAGCAAATTCTGGAAATTTCTAAAAACTCTAAGATGGAATCTTCTGACAACTCACTGCTCATGGAAATTGAATAGTCGAATCATTTGTCGTTGACTAACCGTTGTCATTTGGAGGAAGGGGAACGGGTTGCCCATTTTTCTGGAAGAATACTTTATTTTTGAAGGAGGAGGTGAAGAAAATGGTGCAAAAAGGTCAAAGTTGGGTTCTAGACAGTATCCCCTTGCAAGTTAAAAGAAGCAAAAAGAGTTTGGC</canonical>
            <polymorphic>GTTTGAGTATTCGGCAAGCGTTTATACTGTACGCCTTCTAGAATCGTATCAATCTCAGCACCAAAACCGGGACACTCCCATCTGATCATCATGGATTTCAATTTCGGATAAGTTTCAGATTGGGTCCATTTTTTGAGAAACTGGTTGAAAATTCTTGGAAGATTTTCTCTGATATAAAGAAACTCCAAATGACAGGTCTTAAATTGCAAAAAGCTAAAGTCGTAAAGATGGAAAAATGCTAGTAATAAGTAATCATATTCCCAGATGTAAACGATTTCTTCATATTCTCGCGTAGTTAGAGCAAAATTACCAAGAATAGAAAGATCATTTACTGGAAGATGATACTTTAGAATTCTCCTGATGTCTTTAAGTTTATTTGTAATAGCAAGAGTGTCGACTTGAAATCCATTCGACAGTTTTTCGATAATTTCCATTGGAAGCCAAAGTTTTGAATTTCCGAAATGGTAATTGAGAAATTTGCAATGGTAGATTTCAGATAYGAGCTTTAAGAACTCCAGAATCCCAATATTTAGATAAATCCATCTTGGAGGGTTGTTCATTGGGAATTGAATAATTGAATGTCCCGTTCCCCAATAATCGATTAAATTCGTTCGAATTGTGGTATTTTTTCCCCAATCTCCGATTGTAATTTCTATTCGTTTTGGACTCAAAAATTCTATAGAGAATGCCTTGACCTTCAAATTTAGACTTTTTACGAATTCCGCGCTCTTTTTGGAGATTAGTGCGTAGCAAATTCTGGAAATTTCTAAAAACTCTAAGATGGAATCTTCTGACAACTCACTGCTCATGGAAATTGAATAGTCGAATCATTTGTCGTTGACTAACCGTTGTCATTTGGAGGAAGGGGAACGGGTTGCCCATTTTTCTGGAAGAATACTTTATTTTTGAAGGAGGAGGTGAAGAAAATGGTGCAAAAAGGTCAAAGTTGGGTTCTAGACAGTATCCCCTTGCAAGTTAAAAGAAGCAAAAAGAGTTTGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTACTGGAAGATGATACTTTAGA</pcr_primer_p1>
		<pcr_primer_p2>TATTCAATTCCCAATGAACAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CATTTACTGGAAGATGATACTTTAGAATTCTCCTGATGTCTTTAAGTTTATTTGTAATAGCAAGAGTGTCGACTTGAAATCCATTCGACAGTTTTTCGATAATTTCCATTGGAAGCCAAAGTTTTGAATTTCCGAAATGGTAATTGAGAAATTTGCAATGGTAGATTTCAGATAGGAGCTTTAAGAACTCCAGAATCCCAATATTTAGATAAATCCATCTTGGAGGGTTGTTCATTGGGAATTGAATA</canonical_amplicon>
		<polymorphic_amplicon>CATTTACTGGAAGATGATACTTTAGAATTCTCCTGATGTCTTTAAGTTTATTTGTAATAGCAAGAGTGTCGACTTGAAATCCATTCGACAGTTTTTCGATAATTTCCATTGGAAGCCAAAGTTTTGAATTTCCGAAATGGTAATTGAGAAATTTGCAATGGTAGATTTCAGATAYGAGCTTTAAGAACTCCAGAATCCCAATATTTAGATAAATCCATCTTGGAGGGTTGTTCATTGGGAATTGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2860</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>732842</contig_pos>
        <strand>-</strand>
        <context>CCCCTCTSCC[A/G]CTCCTCCTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCC</left_flank>
        <right_flank>CTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAGACAATCAGAAAGCCATTCTTTCTATTGAATCTGTTGAAAGCCGTTTTTTTTTGGAATTTCTATGTGGTTTAAGGTAATTTCCAGAGCCTTACGATTGTTTTAAGGTAATTCATAGTTAATTCATAGTTAGTTCAATGTAAAGCAAGCAATATTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTCTAGAATTGTTTTTCGTTGAAAAAAAAAATGTTCTGCAACAATTCTTCCAATTTTTGGATTAGCGAAAACTTTGAAAATTATAATCCATT</canonical>
            <polymorphic>GCAGACAATCAGAAAGCCATTCTTTCTATTGAATCTGTTGAAAGCCGTTTTTTTTTGGAATTTCTATGTGGTTTAAGGTAATTTCCAGAGCCTTACGATTGTTTTAAGGTAATTCATAGTTAATTCATAGTTAGTTCAATGTAAAGCAAGCAATATTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCRCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTCTAGAATTGTTTTTCGTTGAAAAAAAAAATGTTCTGCAACAATTCTTCCAATTTTTGGATTAGCGAAAACTTTGAAAATTATAATCCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAATTTCCACACTTTATC</pcr_primer_p1>
		<pcr_primer_p2>CATAAATCCTAACCACTAGACCA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCRCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2861</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>732839</contig_pos>
        <strand>-</strand>
        <context>CTTCCCCTCT[C/G]CCRCTCCTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCT</left_flank>
        <right_flank>CCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGCAGACAATCAGAAAGCCATTCTTTCTATTGAATCTGTTGAAAGCCGTTTTTTTTTGGAATTTCTATGTGGTTTAAGGTAATTTCCAGAGCCTTACGATTGTTTTAAGGTAATTCATAGTTAATTCATAGTTAGTTCAATGTAAAGCAAGCAATATTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTCTAGAATTGTTTTTCGTTGAAAAAAAAAATGTTCTGCAACAATTCTTCCAATTTTTGGATTAGCGAAAACTTTGAAAATTATAATCC</canonical>
            <polymorphic>CATGCAGACAATCAGAAAGCCATTCTTTCTATTGAATCTGTTGAAAGCCGTTTTTTTTTGGAATTTCTATGTGGTTTAAGGTAATTTCCAGAGCCTTACGATTGTTTTAAGGTAATTCATAGTTAATTCATAGTTAGTTCAATGTAAAGCAAGCAATATTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTSCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTCTAGAATTGTTTTTCGTTGAAAAAAAAAATGTTCTGCAACAATTCTTCCAATTTTTGGATTAGCGAAAACTTTGAAAATTATAATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAATTTCCACACTTTATC</pcr_primer_p1>
		<pcr_primer_p2>CATAAATCCTAACCACTAGACCA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTSCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2862</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>732828</contig_pos>
        <strand>-</strand>
        <context>TTTATCATTA[G/T]CTTCCCCTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTA</left_flank>
        <right_flank>CTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTCGGAGGCATGCAGACAATCAGAAAGCCATTCTTTCTATTGAATCTGTTGAAAGCCGTTTTTTTTTGGAATTTCTATGTGGTTTAAGGTAATTTCCAGAGCCTTACGATTGTTTTAAGGTAATTCATAGTTAATTCATAGTTAGTTCAATGTAAAGCAAGCAATATTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTCTAGAATTGTTTTTCGTTGAAAAAAAAAATGTTCTGCAACAATTCTTCCAATTTTTGGATTAGCGAAAACTTTGAA</canonical>
            <polymorphic>AAATTCGGAGGCATGCAGACAATCAGAAAGCCATTCTTTCTATTGAATCTGTTGAAAGCCGTTTTTTTTTGGAATTTCTATGTGGTTTAAGGTAATTTCCAGAGCCTTACGATTGTTTTAAGGTAATTCATAGTTAATTCATAGTTAGTTCAATGTAAAGCAAGCAATATTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAKCTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTCTAGAATTGTTTTTCGTTGAAAAAAAAAATGTTCTGCAACAATTCTTCCAATTTTTGGATTAGCGAAAACTTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>238 221 140 135 87 52 36 31 31 16 13</canonical_bands>
                <polymorphic_bands>378 221 135 87 52 36 31 31 16 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAATTTCCACACTTTATC</pcr_primer_p1>
		<pcr_primer_p2>CATAAATCCTAACCACTAGACCA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAKCTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2863</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>732816</contig_pos>
        <strand>-</strand>
        <context>TATCAGTCAC[A/T]CTTTATCATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCAC</left_flank>
        <right_flank>CTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGAATATACGAAATTCGGAGGCATGCAGACAATCAGAAAGCCATTCTTTCTATTGAATCTGTTGAAAGCCGTTTTTTTTTGGAATTTCTATGTGGTTTAAGGTAATTTCCAGAGCCTTACGATTGTTTTAAGGTAATTCATAGTTAATTCATAGTTAGTTCAATGTAAAGCAAGCAATATTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTCTAGAATTGTTTTTCGTTGAAAAAAAAAATGTTCTGCAACAATTCTTCCAATTTTTGGATTAGC</canonical>
            <polymorphic>ATGGAATATACGAAATTCGGAGGCATGCAGACAATCAGAAAGCCATTCTTTCTATTGAATCTGTTGAAAGCCGTTTTTTTTTGGAATTTCTATGTGGTTTAAGGTAATTTCCAGAGCCTTACGATTGTTTTAAGGTAATTCATAGTTAATTCATAGTTAGTTCAATGTAAAGCAAGCAATATTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACWCTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTCTAGAATTGTTTTTCGTTGAAAAAAAAAATGTTCTGCAACAATTCTTCCAATTTTTGGATTAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>300 129 119 96 69 50 46 36 31 20 17 15 12 12 12 11 8 7 6 2 2</canonical_bands>
                <polymorphic_bands>300 129 119 96 69 52 46 36 31 20 17 15 12 12 12 11 8 7 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAATTTCCACACTTTATC</pcr_primer_p1>
		<pcr_primer_p2>CATAAATCCTAACCACTAGACCA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACWCTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2864</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>732790</contig_pos>
        <strand>-</strand>
        <context>TCCACCGAGT[A/C]ATAGCCTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGT</left_flank>
        <right_flank>ATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATTTGTATCAAATGGAAATTGTACATGGAATATACGAAATTCGGAGGCATGCAGACAATCAGAAAGCCATTCTTTCTATTGAATCTGTTGAAAGCCGTTTTTTTTTGGAATTTCTATGTGGTTTAAGGTAATTTCCAGAGCCTTACGATTGTTTTAAGGTAATTCATAGTTAATTCATAGTTAGTTCAATGTAAAGCAAGCAATATTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTCTAGAATTGTTTTTCGTTGAAAAAAAAAATGTTCTGCA</canonical>
            <polymorphic>CCATTTGTATCAAATGGAAATTGTACATGGAATATACGAAATTCGGAGGCATGCAGACAATCAGAAAGCCATTCTTTCTATTGAATCTGTTGAAAGCCGTTTTTTTTTGGAATTTCTATGTGGTTTAAGGTAATTTCCAGAGCCTTACGATTGTTTTAAGGTAATTCATAGTTAATTCATAGTTAGTTCAATGTAAAGCAAGCAATATTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTMATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTCTAGAATTGTTTTTCGTTGAAAAAAAAAATGTTCTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAATTTCCACACTTTATC</pcr_primer_p1>
		<pcr_primer_p2>CATAAATCCTAACCACTAGACCA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTMATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2865</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>732768</contig_pos>
        <strand>-</strand>
        <context>TTTCAATGRT[G/T]TCCGATGATT</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTT</left_flank>
        <right_flank>TCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAGTTTTATTATGATTGGTACCATTTGTATCAAATGGAAATTGTACATGGAATATACGAAATTCGGAGGCATGCAGACAATCAGAAAGCCATTCTTTCTATTGAATCTGTTGAAAGCCGTTTTTTTTTGGAATTTCTATGTGGTTTAAGGTAATTTCCAGAGCCTTACGATTGTTTTAAGGTAATTCATAGTTAATTCATAGTTAGTTCAATGTAAAGCAAGCAATATTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTCTAGAATTGTTTTTCG</canonical>
            <polymorphic>TCAAGTTTTATTATGATTGGTACCATTTGTATCAAATGGAAATTGTACATGGAATATACGAAATTCGGAGGCATGCAGACAATCAGAAAGCCATTCTTTCTATTGAATCTGTTGAAAGCCGTTTTTTTTTGGAATTTCTATGTGGTTTAAGGTAATTTCCAGAGCCTTACGATTGTTTTAAGGTAATTCATAGTTAATTCATAGTTAGTTCAATGTAAAGCAAGCAATATTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTKTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTCTAGAATTGTTTTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAATTTCCACACTTTATC</pcr_primer_p1>
		<pcr_primer_p2>CATAAATCCTAACCACTAGACCA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTKTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2866</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>732766</contig_pos>
        <strand>-</strand>
        <context>TTTTTCAATG[A/G]TKTCCGATGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATG</left_flank>
        <right_flank>TCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCAAGTTTTATTATGATTGGTACCATTTGTATCAAATGGAAATTGTACATGGAATATACGAAATTCGGAGGCATGCAGACAATCAGAAAGCCATTCTTTCTATTGAATCTGTTGAAAGCCGTTTTTTTTTGGAATTTCTATGTGGTTTAAGGTAATTTCCAGAGCCTTACGATTGTTTTAAGGTAATTCATAGTTAATTCATAGTTAGTTCAATGTAAAGCAAGCAATATTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTCTAGAATTGTTTTT</canonical>
            <polymorphic>GTTCAAGTTTTATTATGATTGGTACCATTTGTATCAAATGGAAATTGTACATGGAATATACGAAATTCGGAGGCATGCAGACAATCAGAAAGCCATTCTTTCTATTGAATCTGTTGAAAGCCGTTTTTTTTTGGAATTTCTATGTGGTTTAAGGTAATTTCCAGAGCCTTACGATTGTTTTAAGGTAATTCATAGTTAATTCATAGTTAGTTCAATGTAAAGCAAGCAATATTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGRTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTCTAGAATTGTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAATTTCCACACTTTATC</pcr_primer_p1>
		<pcr_primer_p2>CATAAATCCTAACCACTAGACCA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGRTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2867</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>732734</contig_pos>
        <strand>-</strand>
        <context>ATGRAAYATT[G/T]AATTTCCTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATT</left_flank>
        <right_flank>AATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCATCGTTTGCCGAATAATCATAAACTCGAGTTCAAGTTTTATTATGATTGGTACCATTTGTATCAAATGGAAATTGTACATGGAATATACGAAATTCGGAGGCATGCAGACAATCAGAAAGCCATTCTTTCTATTGAATCTGTTGAAAGCCGTTTTTTTTTGGAATTTCTATGTGGTTTAAGGTAATTTCCAGAGCCTTACGATTGTTTTAAGGTAATTCATAGTTAATTCATAGTTAGTTCAATGTAAAGCAAGCAATATTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTT</canonical>
            <polymorphic>CATCATCGTTTGCCGAATAATCATAAACTCGAGTTCAAGTTTTATTATGATTGGTACCATTTGTATCAAATGGAAATTGTACATGGAATATACGAAATTCGGAGGCATGCAGACAATCAGAAAGCCATTCTTTCTATTGAATCTGTTGAAAGCCGTTTTTTTTTGGAATTTCTATGTGGTTTAAGGTAATTTCCAGAGCCTTACGATTGTTTTAAGGTAATTCATAGTTAATTCATAGTTAGTTCAATGTAAAGCAAGCAATATTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTKAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>304 304 127 95 71 69 25 5</canonical_bands>
                <polymorphic_bands>329 304 127 95 71 69 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCATTTTGCTATCTATCAAGCTA</pcr_primer_p1>
		<pcr_primer_p2>GTGACTGATATAAAGAGAAGGCTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCAC</canonical_amplicon>
		<polymorphic_amplicon>TTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTKAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2868</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>732730</contig_pos>
        <strand>-</strand>
        <context>TCCAATGRAA[C/T]ATTKAATTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAA</left_flank>
        <right_flank>ATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGCATCATCGTTTGCCGAATAATCATAAACTCGAGTTCAAGTTTTATTATGATTGGTACCATTTGTATCAAATGGAAATTGTACATGGAATATACGAAATTCGGAGGCATGCAGACAATCAGAAAGCCATTCTTTCTATTGAATCTGTTGAAAGCCGTTTTTTTTTGGAATTTCTATGTGGTTTAAGGTAATTTCCAGAGCCTTACGATTGTTTTAAGGTAATTCATAGTTAATTCATAGTTAGTTCAATGTAAAGCAAGCAATATTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAA</canonical>
            <polymorphic>ATGGCATCATCGTTTGCCGAATAATCATAAACTCGAGTTCAAGTTTTATTATGATTGGTACCATTTGTATCAAATGGAAATTGTACATGGAATATACGAAATTCGGAGGCATGCAGACAATCAGAAAGCCATTCTTTCTATTGAATCTGTTGAAAGCCGTTTTTTTTTGGAATTTCTATGTGGTTTAAGGTAATTTCCAGAGCCTTACGATTGTTTTAAGGTAATTCATAGTTAATTCATAGTTAGTTCAATGTAAAGCAAGCAATATTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAYATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>304 304 128 99 71 69 25</canonical_bands>
                <polymorphic_bands>329 304 128 99 71 69</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>299 128 122 103 78 71 64 31 25 21 21 16 11 5 5</canonical_bands>
                <polymorphic_bands>299 128 122 103 78 71 64 31 30 21 21 16 11 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCATTTTGCTATCTATCAAGCTA</pcr_primer_p1>
		<pcr_primer_p2>GTGACTGATATAAAGAGAAGGCTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCAC</canonical_amplicon>
		<polymorphic_amplicon>TTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAYATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2869</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>732727</contig_pos>
        <strand>-</strand>
        <context>TTATCCAATG[A/G]AAYATTKAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATG</left_flank>
        <right_flank>AAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTATGGCATCATCGTTTGCCGAATAATCATAAACTCGAGTTCAAGTTTTATTATGATTGGTACCATTTGTATCAAATGGAAATTGTACATGGAATATACGAAATTCGGAGGCATGCAGACAATCAGAAAGCCATTCTTTCTATTGAATCTGTTGAAAGCCGTTTTTTTTTGGAATTTCTATGTGGTTTAAGGTAATTTCCAGAGCCTTACGATTGTTTTAAGGTAATTCATAGTTAATTCATAGTTAGTTCAATGTAAAGCAAGCAATATTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTG</canonical>
            <polymorphic>CTTATGGCATCATCGTTTGCCGAATAATCATAAACTCGAGTTCAAGTTTTATTATGATTGGTACCATTTGTATCAAATGGAAATTGTACATGGAATATACGAAATTCGGAGGCATGCAGACAATCAGAAAGCCATTCTTTCTATTGAATCTGTTGAAAGCCGTTTTTTTTTGGAATTTCTATGTGGTTTAAGGTAATTTCCAGAGCCTTACGATTGTTTTAAGGTAATTCATAGTTAATTCATAGTTAGTTCAATGTAAAGCAAGCAATATTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGRAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCATTTTGCTATCTATCAAGCTA</pcr_primer_p1>
		<pcr_primer_p2>GTGACTGATATAAAGAGAAGGCTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCAC</canonical_amplicon>
		<polymorphic_amplicon>TTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGRAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2871</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>770749</contig_pos>
        <strand></strand>
        <context>TGGTCCGCAG[A/G]GATYATTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTTTCAATTTCAAGCTAGAGTCAAGATTTTCGACCCCTTGGTCCGCAG</left_flank>
        <right_flank>GATCATTTTTCCTGCAGCCTATCTTCAAAAATCATAGCCCAAAGTGACAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTTGGTTTTTGAGATATGCGCTTTTCTAGTAAGCGTCCACAATTAGCAGGCCACGCTCTCGTCGCATGTGCCCCCTGTTTGCTTTAGCAGTCCCCAATTCCAGGCGCCACAACTTCAAAGGCGCATATCTCAAAAACCAAGATAGCTATGAAAAAGTTGAAAACTAGAAAAATGTGCAATATTTTAAGCTTCACAACTTTCTAGTTGACACATTTCAGTTAGCTCAAGTAGTTGTGGAAATATGCGCCTTTAAAGTTGGCCTCCCTTCTCCCCTACGCCGCCGCCGCCGCCGGTGGGAGTCGCCTAACTTTAAAGGCGCATATCTCAAAAACCGTAAAAGCTAGGAAAAAGTTGTCAACTAGAAAAATGAAGCTCTATTTCTGTTTTATATTATTTGAGAATTTCAGACAATTCCTTTAAACTTTGAACCTATTTTATCAAGTCCCAAAGTTTCAATTTCAAGCTAGAGTCAAGATTTTCGACCCCTTGGTCCGCAGAGATCATTTTTCCTGCAGCCTATCTTCAAAAATCATAGCCCAAAGTGACAAACAACGTTGATTTCTTGGCCCCCTGCAGAAAAAAAATCAACCCAAAAATATCAGAAACATTTTTTTTTGTTGTTTCTTTCCCATCACATAGATCTCTCTTCTCACTACGTGAAGAATGGCAAGATTGATGAGAGAAAAGAGGTAAACAAGAGATAAATGATAAACTGATAGTGTAGGTGATCGGCAGAGGGCAGATCAAATGATCGGGAGAGTGCAAAGTATGCGTTTTGGACTTTGAGAGTGGTCAGAAAAACTTTGACGCCTAAAAAATAGGTTCCAAGTTTTAGGATTTGTTTGAAAATTTGAGAAAATACCAAACAAAAATAGAACTACATTTTTGTAGTTGACAACTTTTTTCTAGCTATCTTAGTTTTAGAGATATGCGCCTTTCAAGTTAGCAGGCAAAAAAGCAGATAGCGTTAGTAAGCTAAATATTTAGCAGACCCACGA</canonical>
            <polymorphic>AGCTTGGTTTTTGAGATATGCGCTTTTCTAGTAAGCGTCCACAATTAGCAGGCCACGCTCTCGTCGCATGTGCCCCCTGTTTGCTTTAGCAGTCCCCAATTCCAGGCGCCACAACTTCAAAGGCGCATATCTCAAAAACCAAGATAGCTATGAAAAAGTTGAAAACTAGAAAAATGTGCAATATTTTAAGCTTCACAACTTTCTAGTTGACACATTTCAGTTAGCTCAAGTAGTTGTGGAAATATGCGCCTTTAAAGTTGGCCTCCCTTCTCCCCTACGCCGCCGCCGCCGCCGGTGGGAGTCGCCTAACTTTAAAGGCGCATATCTCAAAAACCGTAAAAGCTAGGAAAAAGTTGTCAACTAGAAAAATGAAGCTCTATTTCTGTTTTATATTATTTGAGAATTTCAGACAATTCCTTTAAACTTTGAACCTATTTTATCAAGTCCCAAAGTTTCAATTTCAAGCTAGAGTCAAGATTTTCGACCCCTTGGTCCGCAGRGATCATTTTTCCTGCAGCCTATCTTCAAAAATCATAGCCCAAAGTGACAAACAACGTTGATTTCTTGGCCCCCTGCAGAAAAAAAATCAACCCAAAAATATCAGAAACATTTTTTTTTGTTGTTTCTTTCCCATCACATAGATCTCTCTTCTCACTACGTGAAGAATGGCAAGATTGATGAGAGAAAAGAGGTAAACAAGAGATAAATGATAAACTGATAGTGTAGGTGATCGGCAGAGGGCAGATCAAATGATCGGGAGAGTGCAAAGTATGCGTTTTGGACTTTGAGAGTGGTCAGAAAAACTTTGACGCCTAAAAAATAGGTTCCAAGTTTTAGGATTTGTTTGAAAATTTGAGAAAATACCAAACAAAAATAGAACTACATTTTTGTAGTTGACAACTTTTTTCTAGCTATCTTAGTTTTAGAGATATGCGCCTTTCAAGTTAGCAGGCAAAAAAGCAGATAGCGTTAGTAAGCTAAATATTTAGCAGACCCACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCCCAAAGTTTCAATTTCA</pcr_primer_p1>
		<pcr_primer_p2>ACCTCTTTTCTCTCATCAATCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCCCAAAGTTTCAATTTCAAGCTAGAGTCAAGATTTTCGACCCCTTGGTCCGCAGAGATCATTTTTCCTGCAGCCTATCTTCAAAAATCATAGCCCAAAGTGACAAACAACGTTGATTTCTTGGCCCCCTGCAGAAAAAAAATCAACCCAAAAATATCAGAAACATTTTTTTTTGTTGTTTCTTTCCCATCACATAGATCTCTCTTCTCACTACGTGAAGAATGGCAAGATTGATGAGAGAAAAGAGGT</canonical_amplicon>
		<polymorphic_amplicon>GTCCCAAAGTTTCAATTTCAAGCTAGAGTCAAGATTTTCGACCCCTTGGTCCGCAGRGATCATTTTTCCTGCAGCCTATCTTCAAAAATCATAGCCCAAAGTGACAAACAACGTTGATTTCTTGGCCCCCTGCAGAAAAAAAATCAACCCAAAAATATCAGAAACATTTTTTTTTGTTGTTTCTTTCCCATCACATAGATCTCTCTTCTCACTACGTGAAGAATGGCAAGATTGATGAGAGAAAAGAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2872</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>770753</contig_pos>
        <strand></strand>
        <context>CCGCAGRGAT[C/T]ATTTTTCCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAATTTCAAGCTAGAGTCAAGATTTTCGACCCCTTGGTCCGCAGAGAT</left_flank>
        <right_flank>ATTTTTCCTGCAGCCTATCTTCAAAAATCATAGCCCAAAGTGACAAACAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTTTTTGAGATATGCGCTTTTCTAGTAAGCGTCCACAATTAGCAGGCCACGCTCTCGTCGCATGTGCCCCCTGTTTGCTTTAGCAGTCCCCAATTCCAGGCGCCACAACTTCAAAGGCGCATATCTCAAAAACCAAGATAGCTATGAAAAAGTTGAAAACTAGAAAAATGTGCAATATTTTAAGCTTCACAACTTTCTAGTTGACACATTTCAGTTAGCTCAAGTAGTTGTGGAAATATGCGCCTTTAAAGTTGGCCTCCCTTCTCCCCTACGCCGCCGCCGCCGCCGGTGGGAGTCGCCTAACTTTAAAGGCGCATATCTCAAAAACCGTAAAAGCTAGGAAAAAGTTGTCAACTAGAAAAATGAAGCTCTATTTCTGTTTTATATTATTTGAGAATTTCAGACAATTCCTTTAAACTTTGAACCTATTTTATCAAGTCCCAAAGTTTCAATTTCAAGCTAGAGTCAAGATTTTCGACCCCTTGGTCCGCAGAGATCATTTTTCCTGCAGCCTATCTTCAAAAATCATAGCCCAAAGTGACAAACAACGTTGATTTCTTGGCCCCCTGCAGAAAAAAAATCAACCCAAAAATATCAGAAACATTTTTTTTTGTTGTTTCTTTCCCATCACATAGATCTCTCTTCTCACTACGTGAAGAATGGCAAGATTGATGAGAGAAAAGAGGTAAACAAGAGATAAATGATAAACTGATAGTGTAGGTGATCGGCAGAGGGCAGATCAAATGATCGGGAGAGTGCAAAGTATGCGTTTTGGACTTTGAGAGTGGTCAGAAAAACTTTGACGCCTAAAAAATAGGTTCCAAGTTTTAGGATTTGTTTGAAAATTTGAGAAAATACCAAACAAAAATAGAACTACATTTTTGTAGTTGACAACTTTTTTCTAGCTATCTTAGTTTTAGAGATATGCGCCTTTCAAGTTAGCAGGCAAAAAAGCAGATAGCGTTAGTAAGCTAAATATTTAGCAGACCCACGAGAGA</canonical>
            <polymorphic>TGGTTTTTGAGATATGCGCTTTTCTAGTAAGCGTCCACAATTAGCAGGCCACGCTCTCGTCGCATGTGCCCCCTGTTTGCTTTAGCAGTCCCCAATTCCAGGCGCCACAACTTCAAAGGCGCATATCTCAAAAACCAAGATAGCTATGAAAAAGTTGAAAACTAGAAAAATGTGCAATATTTTAAGCTTCACAACTTTCTAGTTGACACATTTCAGTTAGCTCAAGTAGTTGTGGAAATATGCGCCTTTAAAGTTGGCCTCCCTTCTCCCCTACGCCGCCGCCGCCGCCGGTGGGAGTCGCCTAACTTTAAAGGCGCATATCTCAAAAACCGTAAAAGCTAGGAAAAAGTTGTCAACTAGAAAAATGAAGCTCTATTTCTGTTTTATATTATTTGAGAATTTCAGACAATTCCTTTAAACTTTGAACCTATTTTATCAAGTCCCAAAGTTTCAATTTCAAGCTAGAGTCAAGATTTTCGACCCCTTGGTCCGCAGAGATYATTTTTCCTGCAGCCTATCTTCAAAAATCATAGCCCAAAGTGACAAACAACGTTGATTTCTTGGCCCCCTGCAGAAAAAAAATCAACCCAAAAATATCAGAAACATTTTTTTTTGTTGTTTCTTTCCCATCACATAGATCTCTCTTCTCACTACGTGAAGAATGGCAAGATTGATGAGAGAAAAGAGGTAAACAAGAGATAAATGATAAACTGATAGTGTAGGTGATCGGCAGAGGGCAGATCAAATGATCGGGAGAGTGCAAAGTATGCGTTTTGGACTTTGAGAGTGGTCAGAAAAACTTTGACGCCTAAAAAATAGGTTCCAAGTTTTAGGATTTGTTTGAAAATTTGAGAAAATACCAAACAAAAATAGAACTACATTTTTGTAGTTGACAACTTTTTTCTAGCTATCTTAGTTTTAGAGATATGCGCCTTTCAAGTTAGCAGGCAAAAAAGCAGATAGCGTTAGTAAGCTAAATATTTAGCAGACCCACGAGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>496 253 140 88 15 8</canonical_bands>
                <polymorphic_bands>636 253 88 15 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTCAATTTCAAGCTAGAGTCA</pcr_primer_p1>
		<pcr_primer_p2>TCTTGTTTACCTCTTTTCTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTCAATTTCAAGCTAGAGTCAAGATTTTCGACCCCTTGGTCCGCAGAGATCATTTTTCCTGCAGCCTATCTTCAAAAATCATAGCCCAAAGTGACAAACAACGTTGATTTCTTGGCCCCCTGCAGAAAAAAAATCAACCCAAAAATATCAGAAACATTTTTTTTTGTTGTTTCTTTCCCATCACATAGATCTCTCTTCTCACTACGTGAAGAATGGCAAGATTGATGAGAGAAAAGAGGTAAACAAGA</canonical_amplicon>
		<polymorphic_amplicon>GTTTCAATTTCAAGCTAGAGTCAAGATTTTCGACCCCTTGGTCCGCAGAGATYATTTTTCCTGCAGCCTATCTTCAAAAATCATAGCCCAAAGTGACAAACAACGTTGATTTCTTGGCCCCCTGCAGAAAAAAAATCAACCCAAAAATATCAGAAACATTTTTTTTTGTTGTTTCTTTCCCATCACATAGATCTCTCTTCTCACTACGTGAAGAATGGCAAGATTGATGAGAGAAAAGAGGTAAACAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2873</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>770841</contig_pos>
        <strand></strand>
        <context>AAAAATCAAC[C/A]CAAWAATATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AAGTGACAAACAACGTTGATTTCTTGGCCCCCTGCAGAAAAAAAATCAAC</left_flank>
        <right_flank>CAAAAATATCAGAAACATTTTTTTTTGTTGTTTCTTTCCCATCACATAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCCCAATTCCAGGCGCCACAACTTCAAAGGCGCATATCTCAAAAACCAAGATAGCTATGAAAAAGTTGAAAACTAGAAAAATGTGCAATATTTTAAGCTTCACAACTTTCTAGTTGACACATTTCAGTTAGCTCAAGTAGTTGTGGAAATATGCGCCTTTAAAGTTGGCCTCCCTTCTCCCCTACGCCGCCGCCGCCGCCGGTGGGAGTCGCCTAACTTTAAAGGCGCATATCTCAAAAACCGTAAAAGCTAGGAAAAAGTTGTCAACTAGAAAAATGAAGCTCTATTTCTGTTTTATATTATTTGAGAATTTCAGACAATTCCTTTAAACTTTGAACCTATTTTATCAAGTCCCAAAGTTTCAATTTCAAGCTAGAGTCAAGATTTTCGACCCCTTGGTCCGCAGAGATCATTTTTCCTGCAGCCTATCTTCAAAAATCATAGCCCAAAGTGACAAACAACGTTGATTTCTTGGCCCCCTGCAGAAAAAAAATCAACCCAAAAATATCAGAAACATTTTTTTTTGTTGTTTCTTTCCCATCACATAGATCTCTCTTCTCACTACGTGAAGAATGGCAAGATTGATGAGAGAAAAGAGGTAAACAAGAGATAAATGATAAACTGATAGTGTAGGTGATCGGCAGAGGGCAGATCAAATGATCGGGAGAGTGCAAAGTATGCGTTTTGGACTTTGAGAGTGGTCAGAAAAACTTTGACGCCTAAAAAATAGGTTCCAAGTTTTAGGATTTGTTTGAAAATTTGAGAAAATACCAAACAAAAATAGAACTACATTTTTGTAGTTGACAACTTTTTTCTAGCTATCTTAGTTTTAGAGATATGCGCCTTTCAAGTTAGCAGGCAAAAAAGCAGATAGCGTTAGTAAGCTAAATATTTAGCAGACCCACGAGAGACGCAGGCGACGAGAGCGTTGGCCTGCTAAATAATTAGCAGACCAATTCTCTCCCTGCCGGAGGGGCGTCATCCTTAAAGGCGCATATC</canonical>
            <polymorphic>TCCCCAATTCCAGGCGCCACAACTTCAAAGGCGCATATCTCAAAAACCAAGATAGCTATGAAAAAGTTGAAAACTAGAAAAATGTGCAATATTTTAAGCTTCACAACTTTCTAGTTGACACATTTCAGTTAGCTCAAGTAGTTGTGGAAATATGCGCCTTTAAAGTTGGCCTCCCTTCTCCCCTACGCCGCCGCCGCCGCCGGTGGGAGTCGCCTAACTTTAAAGGCGCATATCTCAAAAACCGTAAAAGCTAGGAAAAAGTTGTCAACTAGAAAAATGAAGCTCTATTTCTGTTTTATATTATTTGAGAATTTCAGACAATTCCTTTAAACTTTGAACCTATTTTATCAAGTCCCAAAGTTTCAATTTCAAGCTAGAGTCAAGATTTTCGACCCCTTGGTCCGCAGAGATCATTTTTCCTGCAGCCTATCTTCAAAAATCATAGCCCAAAGTGACAAACAACGTTGATTTCTTGGCCCCCTGCAGAAAAAAAATCAACMCAAAAATATCAGAAACATTTTTTTTTGTTGTTTCTTTCCCATCACATAGATCTCTCTTCTCACTACGTGAAGAATGGCAAGATTGATGAGAGAAAAGAGGTAAACAAGAGATAAATGATAAACTGATAGTGTAGGTGATCGGCAGAGGGCAGATCAAATGATCGGGAGAGTGCAAAGTATGCGTTTTGGACTTTGAGAGTGGTCAGAAAAACTTTGACGCCTAAAAAATAGGTTCCAAGTTTTAGGATTTGTTTGAAAATTTGAGAAAATACCAAACAAAAATAGAACTACATTTTTGTAGTTGACAACTTTTTTCTAGCTATCTTAGTTTTAGAGATATGCGCCTTTCAAGTTAGCAGGCAAAAAAGCAGATAGCGTTAGTAAGCTAAATATTTAGCAGACCCACGAGAGACGCAGGCGACGAGAGCGTTGGCCTGCTAAATAATTAGCAGACCAATTCTCTCCCTGCCGGAGGGGCGTCATCCTTAAAGGCGCATATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTCAATTTCAAGCTAGAGTCA</pcr_primer_p1>
		<pcr_primer_p2>TCTTGTTTACCTCTTTTCTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTCAATTTCAAGCTAGAGTCAAGATTTTCGACCCCTTGGTCCGCAGAGATCATTTTTCCTGCAGCCTATCTTCAAAAATCATAGCCCAAAGTGACAAACAACGTTGATTTCTTGGCCCCCTGCAGAAAAAAAATCAACCCAAAAATATCAGAAACATTTTTTTTTGTTGTTTCTTTCCCATCACATAGATCTCTCTTCTCACTACGTGAAGAATGGCAAGATTGATGAGAGAAAAGAGGTAAACAAGA</canonical_amplicon>
		<polymorphic_amplicon>GTTTCAATTTCAAGCTAGAGTCAAGATTTTCGACCCCTTGGTCCGCAGAGATCATTTTTCCTGCAGCCTATCTTCAAAAATCATAGCCCAAAGTGACAAACAACGTTGATTTCTTGGCCCCCTGCAGAAAAAAAATCAACMCAAAAATATCAGAAACATTTTTTTTTGTTGTTTCTTTCCCATCACATAGATCTCTCTTCTCACTACGTGAAGAATGGCAAGATTGATGAGAGAAAAGAGGTAAACAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2874</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>770845</contig_pos>
        <strand></strand>
        <context>ATCAACMCAA[A/T]AATATCAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACAAACAACGTTGATTTCTTGGCCCCCTGCAGAAAAAAAATCAACCCAA</left_flank>
        <right_flank>AATATCAGAAACATTTTTTTTTGTTGTTTCTTTCCCATCACATAGATCTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTCCAGGCGCCACAACTTCAAAGGCGCATATCTCAAAAACCAAGATAGCTATGAAAAAGTTGAAAACTAGAAAAATGTGCAATATTTTAAGCTTCACAACTTTCTAGTTGACACATTTCAGTTAGCTCAAGTAGTTGTGGAAATATGCGCCTTTAAAGTTGGCCTCCCTTCTCCCCTACGCCGCCGCCGCCGCCGGTGGGAGTCGCCTAACTTTAAAGGCGCATATCTCAAAAACCGTAAAAGCTAGGAAAAAGTTGTCAACTAGAAAAATGAAGCTCTATTTCTGTTTTATATTATTTGAGAATTTCAGACAATTCCTTTAAACTTTGAACCTATTTTATCAAGTCCCAAAGTTTCAATTTCAAGCTAGAGTCAAGATTTTCGACCCCTTGGTCCGCAGAGATCATTTTTCCTGCAGCCTATCTTCAAAAATCATAGCCCAAAGTGACAAACAACGTTGATTTCTTGGCCCCCTGCAGAAAAAAAATCAACCCAAAAATATCAGAAACATTTTTTTTTGTTGTTTCTTTCCCATCACATAGATCTCTCTTCTCACTACGTGAAGAATGGCAAGATTGATGAGAGAAAAGAGGTAAACAAGAGATAAATGATAAACTGATAGTGTAGGTGATCGGCAGAGGGCAGATCAAATGATCGGGAGAGTGCAAAGTATGCGTTTTGGACTTTGAGAGTGGTCAGAAAAACTTTGACGCCTAAAAAATAGGTTCCAAGTTTTAGGATTTGTTTGAAAATTTGAGAAAATACCAAACAAAAATAGAACTACATTTTTGTAGTTGACAACTTTTTTCTAGCTATCTTAGTTTTAGAGATATGCGCCTTTCAAGTTAGCAGGCAAAAAAGCAGATAGCGTTAGTAAGCTAAATATTTAGCAGACCCACGAGAGACGCAGGCGACGAGAGCGTTGGCCTGCTAAATAATTAGCAGACCAATTCTCTCCCTGCCGGAGGGGCGTCATCCTTAAAGGCGCATATCTCGA</canonical>
            <polymorphic>CAATTCCAGGCGCCACAACTTCAAAGGCGCATATCTCAAAAACCAAGATAGCTATGAAAAAGTTGAAAACTAGAAAAATGTGCAATATTTTAAGCTTCACAACTTTCTAGTTGACACATTTCAGTTAGCTCAAGTAGTTGTGGAAATATGCGCCTTTAAAGTTGGCCTCCCTTCTCCCCTACGCCGCCGCCGCCGCCGGTGGGAGTCGCCTAACTTTAAAGGCGCATATCTCAAAAACCGTAAAAGCTAGGAAAAAGTTGTCAACTAGAAAAATGAAGCTCTATTTCTGTTTTATATTATTTGAGAATTTCAGACAATTCCTTTAAACTTTGAACCTATTTTATCAAGTCCCAAAGTTTCAATTTCAAGCTAGAGTCAAGATTTTCGACCCCTTGGTCCGCAGAGATCATTTTTCCTGCAGCCTATCTTCAAAAATCATAGCCCAAAGTGACAAACAACGTTGATTTCTTGGCCCCCTGCAGAAAAAAAATCAACCCAAWAATATCAGAAACATTTTTTTTTGTTGTTTCTTTCCCATCACATAGATCTCTCTTCTCACTACGTGAAGAATGGCAAGATTGATGAGAGAAAAGAGGTAAACAAGAGATAAATGATAAACTGATAGTGTAGGTGATCGGCAGAGGGCAGATCAAATGATCGGGAGAGTGCAAAGTATGCGTTTTGGACTTTGAGAGTGGTCAGAAAAACTTTGACGCCTAAAAAATAGGTTCCAAGTTTTAGGATTTGTTTGAAAATTTGAGAAAATACCAAACAAAAATAGAACTACATTTTTGTAGTTGACAACTTTTTTCTAGCTATCTTAGTTTTAGAGATATGCGCCTTTCAAGTTAGCAGGCAAAAAAGCAGATAGCGTTAGTAAGCTAAATATTTAGCAGACCCACGAGAGACGCAGGCGACGAGAGCGTTGGCCTGCTAAATAATTAGCAGACCAATTCTCTCCCTGCCGGAGGGGCGTCATCCTTAAAGGCGCATATCTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTCAATTTCAAGCTAGAGTCA</pcr_primer_p1>
		<pcr_primer_p2>TCTTGTTTACCTCTTTTCTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTCAATTTCAAGCTAGAGTCAAGATTTTCGACCCCTTGGTCCGCAGAGATCATTTTTCCTGCAGCCTATCTTCAAAAATCATAGCCCAAAGTGACAAACAACGTTGATTTCTTGGCCCCCTGCAGAAAAAAAATCAACCCAAAAATATCAGAAACATTTTTTTTTGTTGTTTCTTTCCCATCACATAGATCTCTCTTCTCACTACGTGAAGAATGGCAAGATTGATGAGAGAAAAGAGGTAAACAAGA</canonical_amplicon>
		<polymorphic_amplicon>GTTTCAATTTCAAGCTAGAGTCAAGATTTTCGACCCCTTGGTCCGCAGAGATCATTTTTCCTGCAGCCTATCTTCAAAAATCATAGCCCAAAGTGACAAACAACGTTGATTTCTTGGCCCCCTGCAGAAAAAAAATCAACCCAAWAATATCAGAAACATTTTTTTTTGTTGTTTCTTTCCCATCACATAGATCTCTCTTCTCACTACGTGAAGAATGGCAAGATTGATGAGAGAAAAGAGGTAAACAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2876</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>774118</contig_pos>
        <strand>+</strand>
        <context>TGGCCCCGGA[A/C]AAAAACGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGATTGGTTAGTATACAAAAATCCCTAGTCAAATTGGAGTTGGCCCCGGA</left_flank>
        <right_flank>AAAAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATTCTGAAATTTCTAGGATCTCAAAGTTGACTTTTTGAGATTTTCCATTTTTTTTCCAGCTTGTTTAATGTCCAGCAGGACTTTAAGGTCATAAATTTAGAATCCAAAAGTAACATAATCTCTTCATATTTAAAGTAATTCAGGCATATTGATAAGATTAACATATCAAAGTTCTCTGAATAAAAAACTTTTTTTTATTTACTCAAATATAGAAATTGCATAGGCACTAGAGTGCAAACTACAAATACTAAAATTTGAAATTTCCAAAAATTTCAAAATATAGGTAGTTCCCTACTAAAAAAAATCCAATTACATATTTATAAAAGCCACTTGGCATAATCCTATGAACTAGTTTTTCTGGAACCCCATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAATATTTCTGAAAAAAATTTCTTAAAAGTTCTAACAATATTCCAAAGATTGGTTAGTATACAAAAATCCCTAGTCAAATTGGAGTTGGCCCCGGACAAAAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAGCAGACCAAAAAATCTGAAAATTTCAGAAATCAGAGAGTGGACTTAGATCTTCATTTTTGTAGTTGACAACTTTTTTCTAGCTACCGTAGTTTTTGAGATATCCGCCTTTAAAGTTAGTTAACCTACTTGGCGCCCCTACCCTCCCTTTCCGCCGCCGCCTGTGAGGGTCGCCAAACTTTCAAAGCGCATACCTCAAAAACGGGAATAGTTTTCAAAAAGGTGTCAACTACAAAAAAGTACAAATTGAAATTTGACACATTTTTGCAATTTACCACTTTTCGCTAGCTACCGTAGTTTTGGAGATACGCGCCTTTGAACTTTGAGCGCGGCAAATACGAGGAGAGGGGTGAAAGGATGCCTCCTTGGGAGCAGCGCGCTAAATTTAAAGGCGCATATTTCAAAAACCAGAATAGTTAAGAAAAAGTTGTCAA</canonical>
            <polymorphic>GTATTCTGAAATTTCTAGGATCTCAAAGTTGACTTTTTGAGATTTTCCATTTTTTTTCCAGCTTGTTTAATGTCCAGCAGGACTTTAAGGTCATAAATTTAGAATCCAAAAGTAACATAATCTCTTCATATTTAAAGTAATTCAGGCATATTGATAAGATTAACATATCAAAGTTCTCTGAATAAAAAACTTTTTTTTATTTACTCAAATATAGAAATTGCATAGGCACTAGAGTGCAAACTACAAATACTAAAATTTGAAATTTCCAAAAATTTCAAAATATAGGTAGTTCCCTACTAAAAAAAATCCAATTACATATTTATAAAAGCCACTTGGCATAATCCTATGAACTAGTTTTTCTGGAACCCCATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAATATTTCTGAAAAAAATTTCTTAAAAGTTCTAACAATATTCCAAAGATTGGTTAGTATACAAAAATCCCTAGTCAAATTGGAGTTGGCCCCGGAMAAAAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAGCAGACCAAAAAATCTGAAAATTTCAGAAATCAGAGAGTGGACTTAGATCTTCATTTTTGTAGTTGACAACTTTTTTCTAGCTACCGTAGTTTTTGAGATATCCGCCTTTAAAGTTAGTTAACCTACTTGGCGCCCCTACCCTCCCTTTCCGCCGCCGCCTGTGAGGGTCGCCAAACTTTCAAAGCGCATACCTCAAAAACGGGAATAGTTTTCAAAAAGGTGTCAACTACAAAAAAGTACAAATTGAAATTTGACACATTTTTGCAATTTACCACTTTTCGCTAGCTACCGTAGTTTTGGAGATACGCGCCTTTGAACTTTGAGCGCGGCAAATACGAGGAGAGGGGTGAAAGGATGCCTCCTTGGGAGCAGCGCGCTAAATTTAAAGGCGCATATTTCAAAAACCAGAATAGTTAAGAAAAAGTTGTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATAAAAGCCACTTGGCATAA</pcr_primer_p1>
		<pcr_primer_p2>CTCACCTCCTTTAAAATGTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATAAAAGCCACTTGGCATAATCCTATGAACTAGTTTTTCTGGAACCCCATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAATATTTCTGAAAAAAATTTCTTAAAAGTTCTAACAATATTCCAAAGATTGGTTAGTATACAAAAATCCCTAGTCAAATTGGAGTTGGCCCCGGACAAAAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAG</canonical_amplicon>
		<polymorphic_amplicon>TATAAAAGCCACTTGGCATAATCCTATGAACTAGTTTTTCTGGAACCCCATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAATATTTCTGAAAAAAATTTCTTAAAAGTTCTAACAATATTCCAAAGATTGGTTAGTATACAAAAATCCCTAGTCAAATTGGAGTTGGCCCCGGAMAAAAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2877</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>774054</contig_pos>
        <strand></strand>
        <context>TTAAAAGTTC[T/C]AACAATATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AACATAATTTTCGAGATAAAATATTTCTGAAAAAAATTTCTTAAAAGTTC</left_flank>
        <right_flank>AACAATATTCCAAAGATTGGTTAGTATACAAAAATCCCTAGTCAAATTGG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAACTACAGTAGGTAGAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGGCTTGTTTTATGTATTCTGAAATTTCTAGGATCTCAAAGTTGACTTTTTGAGATTTTCCATTTTTTTTCCAGCTTGTTTAATGTCCAGCAGGACTTTAAGGTCATAAATTTAGAATCCAAAAGTAACATAATCTCTTCATATTTAAAGTAATTCAGGCATATTGATAAGATTAACATATCAAAGTTCTCTGAATAAAAAACTTTTTTTTATTTACTCAAATATAGAAATTGCATAGGCACTAGAGTGCAAACTACAAATACTAAAATTTGAAATTTCCAAAAATTTCAAAATATAGGTAGTTCCCTACTAAAAAAAATCCAATTACATATTTATAAAAGCCACTTGGCATAATCCTATGAACTAGTTTTTCTGGAACCCCATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAATATTTCTGAAAAAAATTTCTTAAAAGTTCTAACAATATTCCAAAGATTGGTTAGTATACAAAAATCCCTAGTCAAATTGGAGTTGGCCCCGGACAAAAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAGCAGACCAAAAAATCTGAAAATTTCAGAAATCAGAGAGTGGACTTAGATCTTCATTTTTGTAGTTGACAACTTTTTTCTAGCTACCGTAGTTTTTGAGATATCCGCCTTTAAAGTTAGTTAACCTACTTGGCGCCCCTACCCTCCCTTTCCGCCGCCGCCTGTGAGGGTCGCCAAACTTTCAAAGCGCATACCTCAAAAACGGGAATAGTTTTCAAAAAGGTGTCAACTACAAAAAAGTACAAATTGAAATTTGACACATTTTTGCAATTTACCACTTTTCGCTAGCTACCGTAGTTTTGGAGATACGCGCCTTTGAACTTTGAGCGCGGCAAATACGAGGAGAGGGGTGAAAGGATGCCTCCTTGGG</canonical>
            <polymorphic>TCAAAACTACAGTAGGTAGAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGGCTTGTTTTATGTATTCTGAAATTTCTAGGATCTCAAAGTTGACTTTTTGAGATTTTCCATTTTTTTTCCAGCTTGTTTAATGTCCAGCAGGACTTTAAGGTCATAAATTTAGAATCCAAAAGTAACATAATCTCTTCATATTTAAAGTAATTCAGGCATATTGATAAGATTAACATATCAAAGTTCTCTGAATAAAAAACTTTTTTTTATTTACTCAAATATAGAAATTGCATAGGCACTAGAGTGCAAACTACAAATACTAAAATTTGAAATTTCCAAAAATTTCAAAATATAGGTAGTTCCCTACTAAAAAAAATCCAATTACATATTTATAAAAGCCACTTGGCATAATCCTATGAACTAGTTTTTCTGGAACCCCATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAATATTTCTGAAAAAAATTTCTTAAAAGTTCYAACAATATTCCAAAGATTGGTTAGTATACAAAAATCCCTAGTCAAATTGGAGTTGGCCCCGGACAAAAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAGCAGACCAAAAAATCTGAAAATTTCAGAAATCAGAGAGTGGACTTAGATCTTCATTTTTGTAGTTGACAACTTTTTTCTAGCTACCGTAGTTTTTGAGATATCCGCCTTTAAAGTTAGTTAACCTACTTGGCGCCCCTACCCTCCCTTTCCGCCGCCGCCTGTGAGGGTCGCCAAACTTTCAAAGCGCATACCTCAAAAACGGGAATAGTTTTCAAAAAGGTGTCAACTACAAAAAAGTACAAATTGAAATTTGACACATTTTTGCAATTTACCACTTTTCGCTAGCTACCGTAGTTTTGGAGATACGCGCCTTTGAACTTTGAGCGCGGCAAATACGAGGAGAGGGGTGAAAGGATGCCTCCTTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATAAAAGCCACTTGGCATAA</pcr_primer_p1>
		<pcr_primer_p2>CTCACCTCCTTTAAAATGTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATAAAAGCCACTTGGCATAATCCTATGAACTAGTTTTTCTGGAACCCCATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAATATTTCTGAAAAAAATTTCTTAAAAGTTCTAACAATATTCCAAAGATTGGTTAGTATACAAAAATCCCTAGTCAAATTGGAGTTGGCCCCGGACAAAAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAG</canonical_amplicon>
		<polymorphic_amplicon>TATAAAAGCCACTTGGCATAATCCTATGAACTAGTTTTTCTGGAACCCCATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAATATTTCTGAAAAAAATTTCTTAAAAGTTCYAACAATATTCCAAAGATTGGTTAGTATACAAAAATCCCTAGTCAAATTGGAGTTGGCCCCGGACAAAAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2878</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>774027</contig_pos>
        <strand>+</strand>
        <context>AGATAAAATM[A/T]TTCTGYAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTGGAACCCCATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAATA</left_flank>
        <right_flank>TTCTGAAAAAAATTTCTTAAAAGTTCTAACAATATTCCAAAGATTGGTTA</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCGCCTAACTTTAAAGGCGCATATACTCAAAACTACAGTAGGTAGAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGGCTTGTTTTATGTATTCTGAAATTTCTAGGATCTCAAAGTTGACTTTTTGAGATTTTCCATTTTTTTTCCAGCTTGTTTAATGTCCAGCAGGACTTTAAGGTCATAAATTTAGAATCCAAAAGTAACATAATCTCTTCATATTTAAAGTAATTCAGGCATATTGATAAGATTAACATATCAAAGTTCTCTGAATAAAAAACTTTTTTTTATTTACTCAAATATAGAAATTGCATAGGCACTAGAGTGCAAACTACAAATACTAAAATTTGAAATTTCCAAAAATTTCAAAATATAGGTAGTTCCCTACTAAAAAAAATCCAATTACATATTTATAAAAGCCACTTGGCATAATCCTATGAACTAGTTTTTCTGGAACCCCATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAATATTTCTGAAAAAAATTTCTTAAAAGTTCTAACAATATTCCAAAGATTGGTTAGTATACAAAAATCCCTAGTCAAATTGGAGTTGGCCCCGGACAAAAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAGCAGACCAAAAAATCTGAAAATTTCAGAAATCAGAGAGTGGACTTAGATCTTCATTTTTGTAGTTGACAACTTTTTTCTAGCTACCGTAGTTTTTGAGATATCCGCCTTTAAAGTTAGTTAACCTACTTGGCGCCCCTACCCTCCCTTTCCGCCGCCGCCTGTGAGGGTCGCCAAACTTTCAAAGCGCATACCTCAAAAACGGGAATAGTTTTCAAAAAGGTGTCAACTACAAAAAAGTACAAATTGAAATTTGACACATTTTTGCAATTTACCACTTTTCGCTAGCTACCGTAGTTTTGGAGATACGCGCCTTTGAACTTTGAGCGCGGCAAATACGAGG</canonical>
            <polymorphic>GTCGCCTAACTTTAAAGGCGCATATACTCAAAACTACAGTAGGTAGAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGGCTTGTTTTATGTATTCTGAAATTTCTAGGATCTCAAAGTTGACTTTTTGAGATTTTCCATTTTTTTTCCAGCTTGTTTAATGTCCAGCAGGACTTTAAGGTCATAAATTTAGAATCCAAAAGTAACATAATCTCTTCATATTTAAAGTAATTCAGGCATATTGATAAGATTAACATATCAAAGTTCTCTGAATAAAAAACTTTTTTTTATTTACTCAAATATAGAAATTGCATAGGCACTAGAGTGCAAACTACAAATACTAAAATTTGAAATTTCCAAAAATTTCAAAATATAGGTAGTTCCCTACTAAAAAAAATCCAATTACATATTTATAAAAGCCACTTGGCATAATCCTATGAACTAGTTTTTCTGGAACCCCATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAATAWTTCTGAAAAAAATTTCTTAAAAGTTCTAACAATATTCCAAAGATTGGTTAGTATACAAAAATCCCTAGTCAAATTGGAGTTGGCCCCGGACAAAAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAGCAGACCAAAAAATCTGAAAATTTCAGAAATCAGAGAGTGGACTTAGATCTTCATTTTTGTAGTTGACAACTTTTTTCTAGCTACCGTAGTTTTTGAGATATCCGCCTTTAAAGTTAGTTAACCTACTTGGCGCCCCTACCCTCCCTTTCCGCCGCCGCCTGTGAGGGTCGCCAAACTTTCAAAGCGCATACCTCAAAAACGGGAATAGTTTTCAAAAAGGTGTCAACTACAAAAAAGTACAAATTGAAATTTGACACATTTTTGCAATTTACCACTTTTCGCTAGCTACCGTAGTTTTGGAGATACGCGCCTTTGAACTTTGAGCGCGGCAAATACGAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>498 467 35</canonical_bands>
                <polymorphic_bands>533 467</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATAAAAGCCACTTGGCATAA</pcr_primer_p1>
		<pcr_primer_p2>CTCACCTCCTTTAAAATGTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATAAAAGCCACTTGGCATAATCCTATGAACTAGTTTTTCTGGAACCCCATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAATATTTCTGAAAAAAATTTCTTAAAAGTTCTAACAATATTCCAAAGATTGGTTAGTATACAAAAATCCCTAGTCAAATTGGAGTTGGCCCCGGACAAAAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAG</canonical_amplicon>
		<polymorphic_amplicon>TATAAAAGCCACTTGGCATAATCCTATGAACTAGTTTTTCTGGAACCCCATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAATAWTTCTGAAAAAAATTTCTTAAAAGTTCTAACAATATTCCAAAGATTGGTTAGTATACAAAAATCCCTAGTCAAATTGGAGTTGGCCCCGGACAAAAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2879</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>774026</contig_pos>
        <strand>+</strand>
        <context>GAGATAAAAT[A/C]WTTCTGYAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCTGGAACCCCATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAAT</left_flank>
        <right_flank>TTTCTGAAAAAAATTTCTTAAAAGTTCTAACAATATTCCAAAGATTGGTT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTCGCCTAACTTTAAAGGCGCATATACTCAAAACTACAGTAGGTAGAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGGCTTGTTTTATGTATTCTGAAATTTCTAGGATCTCAAAGTTGACTTTTTGAGATTTTCCATTTTTTTTCCAGCTTGTTTAATGTCCAGCAGGACTTTAAGGTCATAAATTTAGAATCCAAAAGTAACATAATCTCTTCATATTTAAAGTAATTCAGGCATATTGATAAGATTAACATATCAAAGTTCTCTGAATAAAAAACTTTTTTTTATTTACTCAAATATAGAAATTGCATAGGCACTAGAGTGCAAACTACAAATACTAAAATTTGAAATTTCCAAAAATTTCAAAATATAGGTAGTTCCCTACTAAAAAAAATCCAATTACATATTTATAAAAGCCACTTGGCATAATCCTATGAACTAGTTTTTCTGGAACCCCATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAATATTTCTGAAAAAAATTTCTTAAAAGTTCTAACAATATTCCAAAGATTGGTTAGTATACAAAAATCCCTAGTCAAATTGGAGTTGGCCCCGGACAAAAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAGCAGACCAAAAAATCTGAAAATTTCAGAAATCAGAGAGTGGACTTAGATCTTCATTTTTGTAGTTGACAACTTTTTTCTAGCTACCGTAGTTTTTGAGATATCCGCCTTTAAAGTTAGTTAACCTACTTGGCGCCCCTACCCTCCCTTTCCGCCGCCGCCTGTGAGGGTCGCCAAACTTTCAAAGCGCATACCTCAAAAACGGGAATAGTTTTCAAAAAGGTGTCAACTACAAAAAAGTACAAATTGAAATTTGACACATTTTTGCAATTTACCACTTTTCGCTAGCTACCGTAGTTTTGGAGATACGCGCCTTTGAACTTTGAGCGCGGCAAATACGAG</canonical>
            <polymorphic>GGTCGCCTAACTTTAAAGGCGCATATACTCAAAACTACAGTAGGTAGAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGGCTTGTTTTATGTATTCTGAAATTTCTAGGATCTCAAAGTTGACTTTTTGAGATTTTCCATTTTTTTTCCAGCTTGTTTAATGTCCAGCAGGACTTTAAGGTCATAAATTTAGAATCCAAAAGTAACATAATCTCTTCATATTTAAAGTAATTCAGGCATATTGATAAGATTAACATATCAAAGTTCTCTGAATAAAAAACTTTTTTTTATTTACTCAAATATAGAAATTGCATAGGCACTAGAGTGCAAACTACAAATACTAAAATTTGAAATTTCCAAAAATTTCAAAATATAGGTAGTTCCCTACTAAAAAAAATCCAATTACATATTTATAAAAGCCACTTGGCATAATCCTATGAACTAGTTTTTCTGGAACCCCATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAATMTTTCTGAAAAAAATTTCTTAAAAGTTCTAACAATATTCCAAAGATTGGTTAGTATACAAAAATCCCTAGTCAAATTGGAGTTGGCCCCGGACAAAAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAGCAGACCAAAAAATCTGAAAATTTCAGAAATCAGAGAGTGGACTTAGATCTTCATTTTTGTAGTTGACAACTTTTTTCTAGCTACCGTAGTTTTTGAGATATCCGCCTTTAAAGTTAGTTAACCTACTTGGCGCCCCTACCCTCCCTTTCCGCCGCCGCCTGTGAGGGTCGCCAAACTTTCAAAGCGCATACCTCAAAAACGGGAATAGTTTTCAAAAAGGTGTCAACTACAAAAAAGTACAAATTGAAATTTGACACATTTTTGCAATTTACCACTTTTCGCTAGCTACCGTAGTTTTGGAGATACGCGCCTTTGAACTTTGAGCGCGGCAAATACGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 466 35</canonical_bands>
                <polymorphic_bands>534 466</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATAAAAGCCACTTGGCATAA</pcr_primer_p1>
		<pcr_primer_p2>CTCACCTCCTTTAAAATGTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATAAAAGCCACTTGGCATAATCCTATGAACTAGTTTTTCTGGAACCCCATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAATATTTCTGAAAAAAATTTCTTAAAAGTTCTAACAATATTCCAAAGATTGGTTAGTATACAAAAATCCCTAGTCAAATTGGAGTTGGCCCCGGACAAAAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAG</canonical_amplicon>
		<polymorphic_amplicon>TATAAAAGCCACTTGGCATAATCCTATGAACTAGTTTTTCTGGAACCCCATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAATMTTTCTGAAAAAAATTTCTTAAAAGTTCTAACAATATTCCAAAGATTGGTTAGTATACAAAAATCCCTAGTCAAATTGGAGTTGGCCCCGGACAAAAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2880</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>828796</contig_pos>
        <strand></strand>
        <context>TGTGTGTCTG[C/T]GCCTCTCCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCTCGCCCTTTACAATGTGTGTGTGTGTGTGTTTTCATCTGTGTGTCTG</left_flank>
        <right_flank>GCCTCTCCAAGATTATACTCTCTCGTTTTCTATTTCTTTTTCTTCTATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCCCATAACGTCCAAATTTTGAAAATGCAAGTTTTATGCGAAAATTCGTTAAAACAGCCGAGTTACGACCAAATCAATATTTTTTGAAAAAAATTCGAAAATTGATTTTTGGACATAACTTTGAAAATTCTTGAAATTTCTCAACTAAACATTCATTTTTGAATTTGCCACGTTTAGATCTTCAAAATGAGTATAATCATGATCTAATTCCCAAAGAATTCAAAATTTCCGACCCCTATGCGCCTTTAATGTCGAATATTGAAAGTGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTTTCAACGCCCTAAATTCATAAATCAAAACAAAATTTATAAAAATCGAGAAACGAAATGGTCGTTTCTCTGTGTCTCTTTTCCTTGTTTTTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCGCCCTTTACAATGTGTGTGTGTGTGTGTTTTCATCTGTGTGTCTGCGCCTCTCCAAGATTATACTCTCTCGTTTTCTATTTCTTTTTCTTCTATTTATCGAATATATATATATATTCGTTATTGTTTATTTTATACATGAATCATTTTATTTTGTAATTTTGTATTTTTGAAAATTTTTCAAAAATTAGAAACCTAATAAAATTAGAGTTTAAAAATCTGAAAAAAAAATCCTTGATTTGTCAATTTTCAGACTGAAATTTCAGTTTTTAGATATATTTTTTCAAGATCTTTCAAAACTCGTTAAAAATTTGAAAATCCAGAATTTTGAGGATTCTGGAAGAGCCAAAATTCTTTTTCCCTCGATTTTCTTTCTTTTTCTCTGCGTCTCGTGTTACACAAAATCTCTAGTTTTTTTTTCCTTTTCACTCACGGATAGGATGGGGGGAAGATAAGTGGAGTAAAACAGAAAGAAACATCTAGAACTTTTTTCTTTTTTTTTTCCTCTCGATTTTCAGTCATTTTCAGTAATAATCTTTTCAATTTTG</canonical>
            <polymorphic>AAGCCCATAACGTCCAAATTTTGAAAATGCAAGTTTTATGCGAAAATTCGTTAAAACAGCCGAGTTACGACCAAATCAATATTTTTTGAAAAAAATTCGAAAATTGATTTTTGGACATAACTTTGAAAATTCTTGAAATTTCTCAACTAAACATTCATTTTTGAATTTGCCACGTTTAGATCTTCAAAATGAGTATAATCATGATCTAATTCCCAAAGAATTCAAAATTTCCGACCCCTATGCGCCTTTAATGTCGAATATTGAAAGTGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTTTCAACGCCCTAAATTCATAAATCAAAACAAAATTTATAAAAATCGAGAAACGAAATGGTCGTTTCTCTGTGTCTCTTTTCCTTGTTTTTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCGCCCTTTACAATGTGTGTGTGTGTGTGTTTTCATCTGTGTGTCTGYGCCTCTCCAAGATTATACTCTCTCGTTTTCTATTTCTTTTTCTTCTATTTATCGAATATATATATATATTCGTTATTGTTTATTTTATACATGAATCATTTTATTTTGTAATTTTGTATTTTTGAAAATTTTTCAAAAATTAGAAACCTAATAAAATTAGAGTTTAAAAATCTGAAAAAAAAATCCTTGATTTGTCAATTTTCAGACTGAAATTTCAGTTTTTAGATATATTTTTTCAAGATCTTTCAAAACTCGTTAAAAATTTGAAAATCCAGAATTTTGAGGATTCTGGAAGAGCCAAAATTCTTTTTCCCTCGATTTTCTTTCTTTTTCTCTGCGTCTCGTGTTACACAAAATCTCTAGTTTTTTTTTCCTTTTCACTCACGGATAGGATGGGGGGAAGATAAGTGGAGTAAAACAGAAAGAAACATCTAGAACTTTTTTCTTTTTTTTTTCCTCTCGATTTTCAGTCATTTTCAGTAATAATCTTTTCAATTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>499 257 244</canonical_bands>
                <polymorphic_bands>756 244</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGGTCGTTTCTCTGTGTC</pcr_primer_p1>
		<pcr_primer_p2>TTCGATAAATAGAAGAAAAAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>196</pcr_amplicon_size>
		<canonical_amplicon>AATGGTCGTTTCTCTGTGTCTCTTTTCCTTGTTTTTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCGCCCTTTACAATGTGTGTGTGTGTGTGTTTTCATCTGTGTGTCTGCGCCTCTCCAAGATTATACTCTCTCGTTTTCTATTTCTTTTTCTTCTATTTATCGAA</canonical_amplicon>
		<polymorphic_amplicon>AATGGTCGTTTCTCTGTGTCTCTTTTCCTTGTTTTTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCGCCCTTTACAATGTGTGTGTGTGTGTGTTTTCATCTGTGTGTCTGYGCCTCTCCAAGATTATACTCTCTCGTTTTCTATTTCTTTTTCTTCTATTTATCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2882</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>872787</contig_pos>
        <strand>+</strand>
        <context>AGGCCTAAAA[A/C]TTTCAGATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATTCCCTGGAAATTTTGAAAAATTTTATTTGGCCATTTTAGGCCTAAAA</left_flank>
        <right_flank>TTTCAGATTTTCAGGAATTTTTTAAACTTGCCTTGACGGTATATGGTAGC</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAGAAATCGAGCTTGGCAGGATTCCCTTGTTGGTATGCTAGCTCCGCAGATGTAGTTTGTAGTCTGCCAGAATTAACGATTCCCGAGATAGCAGACCCAGTTGGGTCTGCTAGACTACAAACTACAAAATTGAAATTAGCAGACCGAAAATGCATTTCTATTCTAAAATCCGTCATTTTTGCTCAAAATTAATTATTTAAAATCGATTCTAGTCTAGTTTTTGTTCATTTTTCCACACCTGCAACCGCAAATTGCATCCAACACCTCCAACGATGAGCAATTCACGACTTCCAGTGTGTGCCATCGCTCTTTCAGTGATCTCGATGAGCATAGCGAAAACTGTCTCCTGGAGGGAGAAGCACAGGTCCGCCGGTGTGTATTCTCTAGATTCTAGGAGTTGTGGAGCGCGGGATTCGATGCAAGACAGGATTCCCGATAAGGAGACGTCCATTCCCTGGAAATTTTGAAAAATTTTATTTGGCCATTTTAGGCCTAAAAATTTCAGATTTTCAGGAATTTTTTAAACTTGCCTTGACGGTATATGGTAGCTCGAAGAGCTTAGCTCCAGATTTTGCCAGTTGCTCAATATTATATCCAGGCGATGGAGCATTTGGAAGCTTCAAAACTCGAGCAAATCGATCCAAACAATTTCCGACGGCGATATCAATGGTCTCACCGAAGATACGGTAGCGCTTGTTGGGTAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTACAATTTCATAAATAGCAGACCAAAACCAAAAAAAAGCCCACTTTTCGTG</canonical>
            <polymorphic>CAAGAAATCGAGCTTGGCAGGATTCCCTTGTTGGTATGCTAGCTCCGCAGATGTAGTTTGTAGTCTGCCAGAATTAACGATTCCCGAGATAGCAGACCCAGTTGGGTCTGCTAGACTACAAACTACAAAATTGAAATTAGCAGACCGAAAATGCATTTCTATTCTAAAATCCGTCATTTTTGCTCAAAATTAATTATTTAAAATCGATTCTAGTCTAGTTTTTGTTCATTTTTCCACACCTGCAACCGCAAATTGCATCCAACACCTCCAACGATGAGCAATTCACGACTTCCAGTGTGTGCCATCGCTCTTTCAGTGATCTCGATGAGCATAGCGAAAACTGTCTCCTGGAGGGAGAAGCACAGGTCCGCCGGTGTGTATTCTCTAGATTCTAGGAGTTGTGGAGCGCGGGATTCGATGCAAGACAGGATTCCCGATAAGGAGACGTCCATTCCCTGGAAATTTTGAAAAATTTTATTTGGCCATTTTAGGCCTAAAAMTTTCAGATTTTCAGGAATTTTTTAAACTTGCCTTGACGGTATATGGTAGCTCGAAGAGCTTAGCTCCAGATTTTGCCAGTTGCTCAATATTATATCCAGGCGATGGAGCATTTGGAAGCTTCAAAACTCGAGCAAATCGATCCAAACAATTTCCGACGGCGATATCAATGGTCTCACCGAAGATACGGTAGCGCTTGTTGGGTAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTACAATTTCATAAATAGCAGACCAAAACCAAAAAAAAGCCCACTTTTCGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>485 460 28 17 10</canonical_bands>
                <polymorphic_bands>485 460 45 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>305 181 132 71 59 57 53 48 29 28 17 10 6 4</canonical_bands>
                <polymorphic_bands>305 181 132 71 59 57 53 48 45 29 10 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGGTGTGTATTCTCTAGATTC</pcr_primer_p1>
		<pcr_primer_p2>CCTGGATATAATATTGAGCAACT</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>CCGGTGTGTATTCTCTAGATTCTAGGAGTTGTGGAGCGCGGGATTCGATGCAAGACAGGATTCCCGATAAGGAGACGTCCATTCCCTGGAAATTTTGAAAAATTTTATTTGGCCATTTTAGGCCTAAAAATTTCAGATTTTCAGGAATTTTTTAAACTTGCCTTGACGGTATATGGTAGCTCGAAGAGCTTAGCTCCAGATTTTGCCAGTTGCTCAATATTATATCCAGG</canonical_amplicon>
		<polymorphic_amplicon>CCGGTGTGTATTCTCTAGATTCTAGGAGTTGTGGAGCGCGGGATTCGATGCAAGACAGGATTCCCGATAAGGAGACGTCCATTCCCTGGAAATTTTGAAAAATTTTATTTGGCCATTTTAGGCCTAAAAMTTTCAGATTTTCAGGAATTTTTTAAACTTGCCTTGACGGTATATGGTAGCTCGAAGAGCTTAGCTCCAGATTTTGCCAGTTGCTCAATATTATATCCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2883</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>872800</contig_pos>
        <strand>+</strand>
        <context>TCAGATTTTC[A/T]GGAAYTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTGAAAAATTTTATTTGGCCATTTTAGGCCTAAAAATTTCAGATTTTC</left_flank>
        <right_flank>GGAATTTTTTAAACTTGCCTTGACGGTATATGGTAGCTCGAAGAGCTTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGCAGGATTCCCTTGTTGGTATGCTAGCTCCGCAGATGTAGTTTGTAGTCTGCCAGAATTAACGATTCCCGAGATAGCAGACCCAGTTGGGTCTGCTAGACTACAAACTACAAAATTGAAATTAGCAGACCGAAAATGCATTTCTATTCTAAAATCCGTCATTTTTGCTCAAAATTAATTATTTAAAATCGATTCTAGTCTAGTTTTTGTTCATTTTTCCACACCTGCAACCGCAAATTGCATCCAACACCTCCAACGATGAGCAATTCACGACTTCCAGTGTGTGCCATCGCTCTTTCAGTGATCTCGATGAGCATAGCGAAAACTGTCTCCTGGAGGGAGAAGCACAGGTCCGCCGGTGTGTATTCTCTAGATTCTAGGAGTTGTGGAGCGCGGGATTCGATGCAAGACAGGATTCCCGATAAGGAGACGTCCATTCCCTGGAAATTTTGAAAAATTTTATTTGGCCATTTTAGGCCTAAAAATTTCAGATTTTCAGGAATTTTTTAAACTTGCCTTGACGGTATATGGTAGCTCGAAGAGCTTAGCTCCAGATTTTGCCAGTTGCTCAATATTATATCCAGGCGATGGAGCATTTGGAAGCTTCAAAACTCGAGCAAATCGATCCAAACAATTTCCGACGGCGATATCAATGGTCTCACCGAAGATACGGTAGCGCTTGTTGGGTAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTACAATTTCATAAATAGCAGACCAAAACCAAAAAAAAGCCCACTTTTCGTGTAAAATTTGTTAT</canonical>
            <polymorphic>TTGGCAGGATTCCCTTGTTGGTATGCTAGCTCCGCAGATGTAGTTTGTAGTCTGCCAGAATTAACGATTCCCGAGATAGCAGACCCAGTTGGGTCTGCTAGACTACAAACTACAAAATTGAAATTAGCAGACCGAAAATGCATTTCTATTCTAAAATCCGTCATTTTTGCTCAAAATTAATTATTTAAAATCGATTCTAGTCTAGTTTTTGTTCATTTTTCCACACCTGCAACCGCAAATTGCATCCAACACCTCCAACGATGAGCAATTCACGACTTCCAGTGTGTGCCATCGCTCTTTCAGTGATCTCGATGAGCATAGCGAAAACTGTCTCCTGGAGGGAGAAGCACAGGTCCGCCGGTGTGTATTCTCTAGATTCTAGGAGTTGTGGAGCGCGGGATTCGATGCAAGACAGGATTCCCGATAAGGAGACGTCCATTCCCTGGAAATTTTGAAAAATTTTATTTGGCCATTTTAGGCCTAAAAATTTCAGATTTTCWGGAATTTTTTAAACTTGCCTTGACGGTATATGGTAGCTCGAAGAGCTTAGCTCCAGATTTTGCCAGTTGCTCAATATTATATCCAGGCGATGGAGCATTTGGAAGCTTCAAAACTCGAGCAAATCGATCCAAACAATTTCCGACGGCGATATCAATGGTCTCACCGAAGATACGGTAGCGCTTGTTGGGTAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTACAATTTCATAAATAGCAGACCAAAACCAAAAAAAAGCCCACTTTTCGTGTAAAATTTGTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGGTGTGTATTCTCTAGATTC</pcr_primer_p1>
		<pcr_primer_p2>CCTGGATATAATATTGAGCAACT</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>CCGGTGTGTATTCTCTAGATTCTAGGAGTTGTGGAGCGCGGGATTCGATGCAAGACAGGATTCCCGATAAGGAGACGTCCATTCCCTGGAAATTTTGAAAAATTTTATTTGGCCATTTTAGGCCTAAAAATTTCAGATTTTCAGGAATTTTTTAAACTTGCCTTGACGGTATATGGTAGCTCGAAGAGCTTAGCTCCAGATTTTGCCAGTTGCTCAATATTATATCCAGG</canonical_amplicon>
		<polymorphic_amplicon>CCGGTGTGTATTCTCTAGATTCTAGGAGTTGTGGAGCGCGGGATTCGATGCAAGACAGGATTCCCGATAAGGAGACGTCCATTCCCTGGAAATTTTGAAAAATTTTATTTGGCCATTTTAGGCCTAAAAATTTCAGATTTTCWGGAATTTTTTAAACTTGCCTTGACGGTATATGGTAGCTCGAAGAGCTTAGCTCCAGATTTTGCCAGTTGCTCAATATTATATCCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2884</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>874125</contig_pos>
        <strand></strand>
        <context>AGAAAAATGC[T/G]TGTTTTCAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TCTGATTGTCTTATTGCTAGAAAAAACAGAATAAAAAACGAGAAAAATGC</left_flank>
        <right_flank>TGTTTTCAGGCCAAACAACATTTTGGTCTGCTAATGTCAAAATTGTAGTT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTACACTTCCTTAATTTTAAGAGTCTCAAGTTGGGATTGCTAGACCCGTTTGTGGTCCAGCAGGCGCCCCTCAACTTCCTCCGCTTGTTAGGAAAAATGGGTCTGCTAGACTACAAACTACGATTCTCGAATTAGCAGACCAATTTTGATCATTTCTCCGCTATTTTTGCCTAATTTAGTTCAAATTTTCTTGAATTTTCACCTGTAGGGGTGCTCCCATCCCAGGTCCTTTGGTGAATGCGATTCCATCGATTTCCTTCTCCGGATCCTGAATTCCAGCCTCACGAATCGCCTCTCCAACTAGACGAACGATCTGTTGCCGATGATGTTGAGCGGTTTCCGTTGGCCGGAATCCTTCTCCGGGCGGCGCATGAAATGTGGCCCGTGGATTCGAGAGAACGACGCCGTCACGAATGATACCGACCTGGAAAAAGTGTGTAGTTTGTAGTCTGATTGTCTTATTGCTAGAAAAAACAGAATAAAAAACGAGAAAAATGCTTGTTTTCAGGCCAAACAACATTTTGGTCTGCTAATGTCAAAATTGTAGTTTGTAGTCTACTGATCATTTAGTTCGAAAAACGGAGAAGACTGAAAGTTTCTAGGTGCAAAATAAGCGAAATTCGATTTTAGTCTGCTAATGTTTTCCCTGTAGTTTGTAGTTAAGCAGGCCCACGGCGCGCTTGGGCTTGCTAGACTACAAACTACAAAAAATAATTAGCAGACCCAAGTTCGAATTTCGCGTTTTTTAATGATTTTTCGCTAATTTTGGTGATTTTTCGCGCTGCGGCCTGCTAGACTACAAACTACAAAGAATAATTAGCAGACCGAAAATAGATTTTCGCATTTTTTTTGTCGATTTTTAACCTAATTTACGGTGATTTTTCGCGCTTCGTTCTGCTAGACTACAAACTACAGGAAATGATTAGCAGACCCAAATTCGAATTTCGCGCTTTTTGTGATTTTTCACTAATTCTTAGAGATCTTCCAACCATCCATTTT</canonical>
            <polymorphic>ACTACACTTCCTTAATTTTAAGAGTCTCAAGTTGGGATTGCTAGACCCGTTTGTGGTCCAGCAGGCGCCCCTCAACTTCCTCCGCTTGTTAGGAAAAATGGGTCTGCTAGACTACAAACTACGATTCTCGAATTAGCAGACCAATTTTGATCATTTCTCCGCTATTTTTGCCTAATTTAGTTCAAATTTTCTTGAATTTTCACCTGTAGGGGTGCTCCCATCCCAGGTCCTTTGGTGAATGCGATTCCATCGATTTCCTTCTCCGGATCCTGAATTCCAGCCTCACGAATCGCCTCTCCAACTAGACGAACGATCTGTTGCCGATGATGTTGAGCGGTTTCCGTTGGCCGGAATCCTTCTCCGGGCGGCGCATGAAATGTGGCCCGTGGATTCGAGAGAACGACGCCGTCACGAATGATACCGACCTGGAAAAAGTGTGTAGTTTGTAGTCTGATTGTCTTATTGCTAGAAAAAACAGAATAAAAAACGAGAAAAATGCKTGTTTTCAGGCCAAACAACATTTTGGTCTGCTAATGTCAAAATTGTAGTTTGTAGTCTACTGATCATTTAGTTCGAAAAACGGAGAAGACTGAAAGTTTCTAGGTGCAAAATAAGCGAAATTCGATTTTAGTCTGCTAATGTTTTCCCTGTAGTTTGTAGTTAAGCAGGCCCACGGCGCGCTTGGGCTTGCTAGACTACAAACTACAAAAAATAATTAGCAGACCCAAGTTCGAATTTCGCGTTTTTTAATGATTTTTCGCTAATTTTGGTGATTTTTCGCGCTGCGGCCTGCTAGACTACAAACTACAAAGAATAATTAGCAGACCGAAAATAGATTTTCGCATTTTTTTTGTCGATTTTTAACCTAATTTACGGTGATTTTTCGCGCTTCGTTCTGCTAGACTACAAACTACAGGAAATGATTAGCAGACCCAAATTCGAATTTCGCGCTTTTTGTGATTTTTCACTAATTCTTAGAGATCTTCCAACCATCCATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATACCGACCTGGAAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GCTTATTTTGCACCTAGAAACT</pcr_primer_p2>
		<pcr_amplicon_size>200</pcr_amplicon_size>
		<canonical_amplicon>GATACCGACCTGGAAAAAGTGTGTAGTTTGTAGTCTGATTGTCTTATTGCTAGAAAAAACAGAATAAAAAACGAGAAAAATGCTTGTTTTCAGGCCAAACAACATTTTGGTCTGCTAATGTCAAAATTGTAGTTTGTAGTCTACTGATCATTTAGTTCGAAAAACGGAGAAGACTGAAAGTTTCTAGGTGCAAAATAAGC</canonical_amplicon>
		<polymorphic_amplicon>GATACCGACCTGGAAAAAGTGTGTAGTTTGTAGTCTGATTGTCTTATTGCTAGAAAAAACAGAATAAAAAACGAGAAAAATGCKTGTTTTCAGGCCAAACAACATTTTGGTCTGCTAATGTCAAAATTGTAGTTTGTAGTCTACTGATCATTTAGTTCGAAAAACGGAGAAGACTGAAAGTTTCTAGGTGCAAAATAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2885</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>874081</contig_pos>
        <strand>+</strand>
        <context>GTAGTCTGAT[C/T]GTCTTATTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGTCACGAATGATACCGACCTGGAAAAAGTGTGTAGTTTGTAGTCTGAT</left_flank>
        <right_flank>GTCTTATTGCTAGAAAAAACAGAATAAAAAACGAGAAAAATGCTTGTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGATGGCGCCAACCTGCAAAAAAATGGGTCTGTTAGACTACAAACTACACTTCCTTAATTTTAAGAGTCTCAAGTTGGGATTGCTAGACCCGTTTGTGGTCCAGCAGGCGCCCCTCAACTTCCTCCGCTTGTTAGGAAAAATGGGTCTGCTAGACTACAAACTACGATTCTCGAATTAGCAGACCAATTTTGATCATTTCTCCGCTATTTTTGCCTAATTTAGTTCAAATTTTCTTGAATTTTCACCTGTAGGGGTGCTCCCATCCCAGGTCCTTTGGTGAATGCGATTCCATCGATTTCCTTCTCCGGATCCTGAATTCCAGCCTCACGAATCGCCTCTCCAACTAGACGAACGATCTGTTGCCGATGATGTTGAGCGGTTTCCGTTGGCCGGAATCCTTCTCCGGGCGGCGCATGAAATGTGGCCCGTGGATTCGAGAGAACGACGCCGTCACGAATGATACCGACCTGGAAAAAGTGTGTAGTTTGTAGTCTGATTGTCTTATTGCTAGAAAAAACAGAATAAAAAACGAGAAAAATGCTTGTTTTCAGGCCAAACAACATTTTGGTCTGCTAATGTCAAAATTGTAGTTTGTAGTCTACTGATCATTTAGTTCGAAAAACGGAGAAGACTGAAAGTTTCTAGGTGCAAAATAAGCGAAATTCGATTTTAGTCTGCTAATGTTTTCCCTGTAGTTTGTAGTTAAGCAGGCCCACGGCGCGCTTGGGCTTGCTAGACTACAAACTACAAAAAATAATTAGCAGACCCAAGTTCGAATTTCGCGTTTTTTAATGATTTTTCGCTAATTTTGGTGATTTTTCGCGCTGCGGCCTGCTAGACTACAAACTACAAAGAATAATTAGCAGACCGAAAATAGATTTTCGCATTTTTTTTGTCGATTTTTAACCTAATTTACGGTGATTTTTCGCGCTTCGTTCTGCTAGACTACAAACTACAGGAAATGATTAGCAGACCCAAATTCGAATTTCGCGCTTTTT</canonical>
            <polymorphic>ACGATGGCGCCAACCTGCAAAAAAATGGGTCTGTTAGACTACAAACTACACTTCCTTAATTTTAAGAGTCTCAAGTTGGGATTGCTAGACCCGTTTGTGGTCCAGCAGGCGCCCCTCAACTTCCTCCGCTTGTTAGGAAAAATGGGTCTGCTAGACTACAAACTACGATTCTCGAATTAGCAGACCAATTTTGATCATTTCTCCGCTATTTTTGCCTAATTTAGTTCAAATTTTCTTGAATTTTCACCTGTAGGGGTGCTCCCATCCCAGGTCCTTTGGTGAATGCGATTCCATCGATTTCCTTCTCCGGATCCTGAATTCCAGCCTCACGAATCGCCTCTCCAACTAGACGAACGATCTGTTGCCGATGATGTTGAGCGGTTTCCGTTGGCCGGAATCCTTCTCCGGGCGGCGCATGAAATGTGGCCCGTGGATTCGAGAGAACGACGCCGTCACGAATGATACCGACCTGGAAAAAGTGTGTAGTTTGTAGTCTGATYGTCTTATTGCTAGAAAAAACAGAATAAAAAACGAGAAAAATGCTTGTTTTCAGGCCAAACAACATTTTGGTCTGCTAATGTCAAAATTGTAGTTTGTAGTCTACTGATCATTTAGTTCGAAAAACGGAGAAGACTGAAAGTTTCTAGGTGCAAAATAAGCGAAATTCGATTTTAGTCTGCTAATGTTTTCCCTGTAGTTTGTAGTTAAGCAGGCCCACGGCGCGCTTGGGCTTGCTAGACTACAAACTACAAAAAATAATTAGCAGACCCAAGTTCGAATTTCGCGTTTTTTAATGATTTTTCGCTAATTTTGGTGATTTTTCGCGCTGCGGCCTGCTAGACTACAAACTACAAAGAATAATTAGCAGACCGAAAATAGATTTTCGCATTTTTTTTGTCGATTTTTAACCTAATTTACGGTGATTTTTCGCGCTTCGTTCTGCTAGACTACAAACTACAGGAAATGATTAGCAGACCCAAATTCGAATTTCGCGCTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTCCAACTAGACGAACGAT</pcr_primer_p1>
		<pcr_primer_p2>TACAATTTTGACATTAGCAGACC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CTCTCCAACTAGACGAACGATCTGTTGCCGATGATGTTGAGCGGTTTCCGTTGGCCGGAATCCTTCTCCGGGCGGCGCATGAAATGTGGCCCGTGGATTCGAGAGAACGACGCCGTCACGAATGATACCGACCTGGAAAAAGTGTGTAGTTTGTAGTCTGATTGTCTTATTGCTAGAAAAAACAGAATAAAAAACGAGAAAAATGCTTGTTTTCAGGCCAAACAACATTTTGGTCTGCTAATGTCAAAATTGTA</canonical_amplicon>
		<polymorphic_amplicon>CTCTCCAACTAGACGAACGATCTGTTGCCGATGATGTTGAGCGGTTTCCGTTGGCCGGAATCCTTCTCCGGGCGGCGCATGAAATGTGGCCCGTGGATTCGAGAGAACGACGCCGTCACGAATGATACCGACCTGGAAAAAGTGTGTAGTTTGTAGTCTGATYGTCTTATTGCTAGAAAAAACAGAATAAAAAACGAGAAAAATGCTTGTTTTCAGGCCAAACAACATTTTGGTCTGCTAATGTCAAAATTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2886</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>874009</contig_pos>
        <strand>+</strand>
        <context>GAAATGTGGC[A/C]CGTGGATTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCGGTTTCCGTTGGCCGGAATCCTTCTCCGGGCGGCGCATGAAATGTGGC</left_flank>
        <right_flank>CGTGGATTCGAGAGAACGACGCCGTCACGAATGATACCGACCTGGAAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCAATGTGTCCAACACAGTGATTGACCGGAATGATGGGTTTTTGCCATCGGAGGGACAGTGTACGAGCGACGATGGCGCCAACCTGCAAAAAAATGGGTCTGTTAGACTACAAACTACACTTCCTTAATTTTAAGAGTCTCAAGTTGGGATTGCTAGACCCGTTTGTGGTCCAGCAGGCGCCCCTCAACTTCCTCCGCTTGTTAGGAAAAATGGGTCTGCTAGACTACAAACTACGATTCTCGAATTAGCAGACCAATTTTGATCATTTCTCCGCTATTTTTGCCTAATTTAGTTCAAATTTTCTTGAATTTTCACCTGTAGGGGTGCTCCCATCCCAGGTCCTTTGGTGAATGCGATTCCATCGATTTCCTTCTCCGGATCCTGAATTCCAGCCTCACGAATCGCCTCTCCAACTAGACGAACGATCTGTTGCCGATGATGTTGAGCGGTTTCCGTTGGCCGGAATCCTTCTCCGGGCGGCGCATGAAATGTGGCCCGTGGATTCGAGAGAACGACGCCGTCACGAATGATACCGACCTGGAAAAAGTGTGTAGTTTGTAGTCTGATTGTCTTATTGCTAGAAAAAACAGAATAAAAAACGAGAAAAATGCTTGTTTTCAGGCCAAACAACATTTTGGTCTGCTAATGTCAAAATTGTAGTTTGTAGTCTACTGATCATTTAGTTCGAAAAACGGAGAAGACTGAAAGTTTCTAGGTGCAAAATAAGCGAAATTCGATTTTAGTCTGCTAATGTTTTCCCTGTAGTTTGTAGTTAAGCAGGCCCACGGCGCGCTTGGGCTTGCTAGACTACAAACTACAAAAAATAATTAGCAGACCCAAGTTCGAATTTCGCGTTTTTTAATGATTTTTCGCTAATTTTGGTGATTTTTCGCGCTGCGGCCTGCTAGACTACAAACTACAAAGAATAATTAGCAGACCGAAAATAGATTTTCGCATTTTTTTTGTCGATTTTTAACCTAATTTACGGTGATTTTT</canonical>
            <polymorphic>ATTTCAATGTGTCCAACACAGTGATTGACCGGAATGATGGGTTTTTGCCATCGGAGGGACAGTGTACGAGCGACGATGGCGCCAACCTGCAAAAAAATGGGTCTGTTAGACTACAAACTACACTTCCTTAATTTTAAGAGTCTCAAGTTGGGATTGCTAGACCCGTTTGTGGTCCAGCAGGCGCCCCTCAACTTCCTCCGCTTGTTAGGAAAAATGGGTCTGCTAGACTACAAACTACGATTCTCGAATTAGCAGACCAATTTTGATCATTTCTCCGCTATTTTTGCCTAATTTAGTTCAAATTTTCTTGAATTTTCACCTGTAGGGGTGCTCCCATCCCAGGTCCTTTGGTGAATGCGATTCCATCGATTTCCTTCTCCGGATCCTGAATTCCAGCCTCACGAATCGCCTCTCCAACTAGACGAACGATCTGTTGCCGATGATGTTGAGCGGTTTCCGTTGGCCGGAATCCTTCTCCGGGCGGCGCATGAAATGTGGCMCGTGGATTCGAGAGAACGACGCCGTCACGAATGATACCGACCTGGAAAAAGTGTGTAGTTTGTAGTCTGATTGTCTTATTGCTAGAAAAAACAGAATAAAAAACGAGAAAAATGCTTGTTTTCAGGCCAAACAACATTTTGGTCTGCTAATGTCAAAATTGTAGTTTGTAGTCTACTGATCATTTAGTTCGAAAAACGGAGAAGACTGAAAGTTTCTAGGTGCAAAATAAGCGAAATTCGATTTTAGTCTGCTAATGTTTTCCCTGTAGTTTGTAGTTAAGCAGGCCCACGGCGCGCTTGGGCTTGCTAGACTACAAACTACAAAAAATAATTAGCAGACCCAAGTTCGAATTTCGCGTTTTTTAATGATTTTTCGCTAATTTTGGTGATTTTTCGCGCTGCGGCCTGCTAGACTACAAACTACAAAGAATAATTAGCAGACCGAAAATAGATTTTCGCATTTTTTTTGTCGATTTTTAACCTAATTTACGGTGATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>287 216 171 171 155</canonical_bands>
                <polymorphic_bands>442 216 171 171</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>338 287 213 162</canonical_bands>
                <polymorphic_bands>449 338 213</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>463 159 128 119 96 35</canonical_bands>
                <polymorphic_bands>463 163 159 119 96</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 287 213</canonical_bands>
                <polymorphic_bands>787 213</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>396 159 128 102 96 67 35 17</canonical_bands>
                <polymorphic_bands>396 163 159 102 96 67 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTTGAATTTTCACCTGTAG</pcr_primer_p1>
		<pcr_primer_p2>ACTTTTTCCAGGTCGGTATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTTGAATTTTCACCTGTAGGGGTGCTCCCATCCCAGGTCCTTTGGTGAATGCGATTCCATCGATTTCCTTCTCCGGATCCTGAATTCCAGCCTCACGAATCGCCTCTCCAACTAGACGAACGATCTGTTGCCGATGATGTTGAGCGGTTTCCGTTGGCCGGAATCCTTCTCCGGGCGGCGCATGAAATGTGGCCCGTGGATTCGAGAGAACGACGCCGTCACGAATGATACCGACCTGGAAAAAGT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTTGAATTTTCACCTGTAGGGGTGCTCCCATCCCAGGTCCTTTGGTGAATGCGATTCCATCGATTTCCTTCTCCGGATCCTGAATTCCAGCCTCACGAATCGCCTCTCCAACTAGACGAACGATCTGTTGCCGATGATGTTGAGCGGTTTCCGTTGGCCGGAATCCTTCTCCGGGCGGCGCATGAAATGTGGCMCGTGGATTCGAGAGAACGACGCCGTCACGAATGATACCGACCTGGAAAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2887</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>873895</contig_pos>
        <strand>+</strand>
        <context>TCTCCGGATC[C/T]TGAATTCCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCCCAGGTCCTTTGGTGAATGCGATTCCATCGATTTCCTTCTCCGGATC</left_flank>
        <right_flank>TGAATTCCAGCCTCACGAATCGCCTCTCCAACTAGACGAACGATCTGTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCTAAAATCCATAATTTTCGATCAATCTTCTCGATTTCTTTTCACAAACCTGTGTATTTCCACCGCTCACATACAAAACAACAGGATTATCCGCCCCCGTGATCAGTCGACCCATTTCAATGTGTCCAACACAGTGATTGACCGGAATGATGGGTTTTTGCCATCGGAGGGACAGTGTACGAGCGACGATGGCGCCAACCTGCAAAAAAATGGGTCTGTTAGACTACAAACTACACTTCCTTAATTTTAAGAGTCTCAAGTTGGGATTGCTAGACCCGTTTGTGGTCCAGCAGGCGCCCCTCAACTTCCTCCGCTTGTTAGGAAAAATGGGTCTGCTAGACTACAAACTACGATTCTCGAATTAGCAGACCAATTTTGATCATTTCTCCGCTATTTTTGCCTAATTTAGTTCAAATTTTCTTGAATTTTCACCTGTAGGGGTGCTCCCATCCCAGGTCCTTTGGTGAATGCGATTCCATCGATTTCCTTCTCCGGATCCTGAATTCCAGCCTCACGAATCGCCTCTCCAACTAGACGAACGATCTGTTGCCGATGATGTTGAGCGGTTTCCGTTGGCCGGAATCCTTCTCCGGGCGGCGCATGAAATGTGGCCCGTGGATTCGAGAGAACGACGCCGTCACGAATGATACCGACCTGGAAAAAGTGTGTAGTTTGTAGTCTGATTGTCTTATTGCTAGAAAAAACAGAATAAAAAACGAGAAAAATGCTTGTTTTCAGGCCAAACAACATTTTGGTCTGCTAATGTCAAAATTGTAGTTTGTAGTCTACTGATCATTTAGTTCGAAAAACGGAGAAGACTGAAAGTTTCTAGGTGCAAAATAAGCGAAATTCGATTTTAGTCTGCTAATGTTTTCCCTGTAGTTTGTAGTTAAGCAGGCCCACGGCGCGCTTGGGCTTGCTAGACTACAAACTACAAAAAATAATTAGCAGACCCAAGTTCGAATTTCGCGTTTTTTAATGATTTTTCGCTAATTTTGG</canonical>
            <polymorphic>GCCTAAAATCCATAATTTTCGATCAATCTTCTCGATTTCTTTTCACAAACCTGTGTATTTCCACCGCTCACATACAAAACAACAGGATTATCCGCCCCCGTGATCAGTCGACCCATTTCAATGTGTCCAACACAGTGATTGACCGGAATGATGGGTTTTTGCCATCGGAGGGACAGTGTACGAGCGACGATGGCGCCAACCTGCAAAAAAATGGGTCTGTTAGACTACAAACTACACTTCCTTAATTTTAAGAGTCTCAAGTTGGGATTGCTAGACCCGTTTGTGGTCCAGCAGGCGCCCCTCAACTTCCTCCGCTTGTTAGGAAAAATGGGTCTGCTAGACTACAAACTACGATTCTCGAATTAGCAGACCAATTTTGATCATTTCTCCGCTATTTTTGCCTAATTTAGTTCAAATTTTCTTGAATTTTCACCTGTAGGGGTGCTCCCATCCCAGGTCCTTTGGTGAATGCGATTCCATCGATTTCCTTCTCCGGATCYTGAATTCCAGCCTCACGAATCGCCTCTCCAACTAGACGAACGATCTGTTGCCGATGATGTTGAGCGGTTTCCGTTGGCCGGAATCCTTCTCCGGGCGGCGCATGAAATGTGGCCCGTGGATTCGAGAGAACGACGCCGTCACGAATGATACCGACCTGGAAAAAGTGTGTAGTTTGTAGTCTGATTGTCTTATTGCTAGAAAAAACAGAATAAAAAACGAGAAAAATGCTTGTTTTCAGGCCAAACAACATTTTGGTCTGCTAATGTCAAAATTGTAGTTTGTAGTCTACTGATCATTTAGTTCGAAAAACGGAGAAGACTGAAAGTTTCTAGGTGCAAAATAAGCGAAATTCGATTTTAGTCTGCTAATGTTTTCCCTGTAGTTTGTAGTTAAGCAGGCCCACGGCGCGCTTGGGCTTGCTAGACTACAAACTACAAAAAATAATTAGCAGACCCAAGTTCGAATTTCGCGTTTTTTAATGATTTTTCGCTAATTTTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGATCC</site>
                <isoschizomers>
                    <enzyme>BamHI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>503 201 194 102</canonical_bands>
                <polymorphic_bands>704 194 102</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTTGAATTTTCACCTGTAG</pcr_primer_p1>
		<pcr_primer_p2>ACTTTTTCCAGGTCGGTATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTTGAATTTTCACCTGTAGGGGTGCTCCCATCCCAGGTCCTTTGGTGAATGCGATTCCATCGATTTCCTTCTCCGGATCCTGAATTCCAGCCTCACGAATCGCCTCTCCAACTAGACGAACGATCTGTTGCCGATGATGTTGAGCGGTTTCCGTTGGCCGGAATCCTTCTCCGGGCGGCGCATGAAATGTGGCCCGTGGATTCGAGAGAACGACGCCGTCACGAATGATACCGACCTGGAAAAAGT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTTGAATTTTCACCTGTAGGGGTGCTCCCATCCCAGGTCCTTTGGTGAATGCGATTCCATCGATTTCCTTCTCCGGATCYTGAATTCCAGCCTCACGAATCGCCTCTCCAACTAGACGAACGATCTGTTGCCGATGATGTTGAGCGGTTTCCGTTGGCCGGAATCCTTCTCCGGGCGGCGCATGAAATGTGGCCCGTGGATTCGAGAGAACGACGCCGTCACGAATGATACCGACCTGGAAAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2912</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>873748</contig_pos>
        <strand></strand>
        <context>tacaaactac[G/C]attctcgaat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CAACTTCCTCCGCTTGTTAGGAAAAATGGGTCTGCTAGACTACAAACTAC</left_flank>
        <right_flank>ATTCTCGAATTAGCAGACCAATTTTGATCATTTCTCCGCTATTTTTGCCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAGCAGACCAAAACCAAAAAAAAGCCCACTTTTCGTGTAAAATTTGTTATTTTTTCTGAAATTTCTTCAAATTTCAAAAATGGGTCTGCTAGGCAAACTACATTTCATATAATTAGCAGACCAAAACCAAAAAAACGCATTTTTCGCCTAAAATCCATAATTTTCGATCAATCTTCTCGATTTCTTTTCACAAACCTGTGTATTTCCACCGCTCACATACAAAACAACAGGATTATCCGCCCCCGTGATCAGTCGACCCATTTCAATGTGTCCAACACAGTGATTGACCGGAATGATGGGTTTTTGCCATCGGAGGGACAGTGTACGAGCGACGATGGCGCCAACCTGCAAAAAAATGGGTCTGTTAGACTACAAACTACACTTCCTTAATTTTAAGAGTCTCAAGTTGGGATTGCTAGACCCGTTTGTGGTCCAGCAGGCGCCCCTCAACTTCCTCCGCTTGTTAGGAAAAATGGGTCTGCTAGACTACAAACTACGATTCTCGAATTAGCAGACCAATTTTGATCATTTCTCCGCTATTTTTGCCTAATTTAGTTCAAATTTTCTTGAATTTTCACCTGTAGGGGTGCTCCCATCCCAGGTCCTTTGGTGAATGCGATTCCATCGATTTCCTTCTCCGGATCCTGAATTCCAGCCTCACGAATCGCCTCTCCAACTAGACGAACGATCTGTTGCCGATGATGTTGAGCGGTTTCCGTTGGCCGGAATCCTTCTCCGGGCGGCGCATGAAATGTGGCCCGTGGATTCGAGAGAACGACGCCGTCACGAATGATACCGACCTGGAAAAAGTGTGTAGTTTGTAGTCTGATTGTCTTATTGCTAGAAAAAACAGAATAAAAAACGAGAAAAATGCTTGTTTTCAGGCCAAACAACATTTTGGTCTGCTAATGTCAAAATTGTAGTTTGTAGTCTACTGATCATTTAGTTCGAAAAACGGAGAAGACTGAAAGTTTCTAGGTGCAAAATAAGCGAAATTC</canonical>
            <polymorphic>AATAGCAGACCAAAACCAAAAAAAAGCCCACTTTTCGTGTAAAATTTGTTATTTTTTCTGAAATTTCTTCAAATTTCAAAAATGGGTCTGCTAGGCAAACTACATTTCATATAATTAGCAGACCAAAACCAAAAAAACGCATTTTTCGCCTAAAATCCATAATTTTCGATCAATCTTCTCGATTTCTTTTCACAAACCTGTGTATTTCCACCGCTCACATACAAAACAACAGGATTATCCGCCCCCGTGATCAGTCGACCCATTTCAATGTGTCCAACACAGTGATTGACCGGAATGATGGGTTTTTGCCATCGGAGGGACAGTGTACGAGCGACGATGGCGCCAACCTGCAAAAAAATGGGTCTGTTAGACTACAAACTACACTTCCTTAATTTTAAGAGTCTCAAGTTGGGATTGCTAGACCCGTTTGTGGTCCAGCAGGCGCCCCTCAACTTCCTCCGCTTGTTAGGAAAAATGGGTCTGCTAGACTACAAACTACSATTCTCGAATTAGCAGACCAATTTTGATCATTTCTCCGCTATTTTTGCCTAATTTAGTTCAAATTTTCTTGAATTTTCACCTGTAGGGGTGCTCCCATCCCAGGTCCTTTGGTGAATGCGATTCCATCGATTTCCTTCTCCGGATCCTGAATTCCAGCCTCACGAATCGCCTCTCCAACTAGACGAACGATCTGTTGCCGATGATGTTGAGCGGTTTCCGTTGGCCGGAATCCTTCTCCGGGCGGCGCATGAAATGTGGCCCGTGGATTCGAGAGAACGACGCCGTCACGAATGATACCGACCTGGAAAAAGTGTGTAGTTTGTAGTCTGATTGTCTTATTGCTAGAAAAAACAGAATAAAAAACGAGAAAAATGCTTGTTTTCAGGCCAAACAACATTTTGGTCTGCTAATGTCAAAATTGTAGTTTGTAGTCTACTGATCATTTAGTTCGAAAAACGGAGAAGACTGAAAGTTTCTAGGTGCAAAATAAGCGAAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>399 234 120 101 64 44 38</canonical_bands>
                <polymorphic_bands>399 234 221 64 44 38</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 234 120 64 44 38</canonical_bands>
                <polymorphic_bands>620 234 64 44 38</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTCAAGTTGGGATTGCTA</pcr_primer_p1>
		<pcr_primer_p2>AGAAGGAAATCGATGGAATC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GTCTCAAGTTGGGATTGCTAGACCCGTTTGTGGTCCAGCAGGCGCCCCTCAACTTCCTCCGCTTGTTAGGAAAAATGGGTCTGCTAGACTACAAACTACGATTCTCGAATTAGCAGACCAATTTTGATCATTTCTCCGCTATTTTTGCCTAATTTAGTTCAAATTTTCTTGAATTTTCACCTGTAGGGGTGCTCCCATCCCAGGTCCTTTGGTGAATGCGATTCCATCGATTTCCTTCT</canonical_amplicon>
		<polymorphic_amplicon>GTCTCAAGTTGGGATTGCTAGACCCGTTTGTGGTCCAGCAGGCGCCCCTCAACTTCCTCCGCTTGTTAGGAAAAATGGGTCTGCTAGACTACAAACTACSATTCTCGAATTAGCAGACCAATTTTGATCATTTCTCCGCTATTTTTGCCTAATTTAGTTCAAATTTTCTTGAATTTTCACCTGTAGGGGTGCTCCCATCCCAGGTCCTTTGGTGAATGCGATTCCATCGATTTCCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2953</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>873638</contig_pos>
        <strand>+</strand>
        <context>TACACTTYCT[C/T]AATTTTAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCGCCAACCTGCAAAAAAATGGGTCTGTTAGACTACAAACTACACTTCCT</left_flank>
        <right_flank>AATTTTAAGAGTCTCAAGTTGGGATTGCTAGACCCGTTTGTGGTCCAGCA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTACAATTTCATAAATAGCAGACCAAAACCAAAAAAAAGCCCACTTTTCGTGTAAAATTTGTTATTTTTTCTGAAATTTCTTCAAATTTCAAAAATGGGTCTGCTAGGCAAACTACATTTCATATAATTAGCAGACCAAAACCAAAAAAACGCATTTTTCGCCTAAAATCCATAATTTTCGATCAATCTTCTCGATTTCTTTTCACAAACCTGTGTATTTCCACCGCTCACATACAAAACAACAGGATTATCCGCCCCCGTGATCAGTCGACCCATTTCAATGTGTCCAACACAGTGATTGACCGGAATGATGGGTTTTTGCCATCGGAGGGACAGTGTACGAGCGACGATGGCGCCAACCTGCAAAAAAATGGGTCTGTTAGACTACAAACTACACTTCCTTAATTTTAAGAGTCTCAAGTTGGGATTGCTAGACCCGTTTGTGGTCCAGCAGGCGCCCCTCAACTTCCTCCGCTTGTTAGGAAAAATGGGTCTGCTAGACTACAAACTACGATTCTCGAATTAGCAGACCAATTTTGATCATTTCTCCGCTATTTTTGCCTAATTTAGTTCAAATTTTCTTGAATTTTCACCTGTAGGGGTGCTCCCATCCCAGGTCCTTTGGTGAATGCGATTCCATCGATTTCCTTCTCCGGATCCTGAATTCCAGCCTCACGAATCGCCTCTCCAACTAGACGAACGATCTGTTGCCGATGATGTTGAGCGGTTTCCGTTGGCCGGAATCCTTCTCCGGGCGGCGCATGAAATGTGGCCCGTGGATTCGAGAGAACGACGCCGTCACGAATGATACCGACCTGGAAAAAGTGTGTAGTTTGTAGTCTGATTGTCTTATTGCTAGAAAAAACAGAATAAAAAACGAGAAAAATGCTTGTTTTCAGGCCA</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTACAATTTCATAAATAGCAGACCAAAACCAAAAAAAAGCCCACTTTTCGTGTAAAATTTGTTATTTTTTCTGAAATTTCTTCAAATTTCAAAAATGGGTCTGCTAGGCAAACTACATTTCATATAATTAGCAGACCAAAACCAAAAAAACGCATTTTTCGCCTAAAATCCATAATTTTCGATCAATCTTCTCGATTTCTTTTCACAAACCTGTGTATTTCCACCGCTCACATACAAAACAACAGGATTATCCGCCCCCGTGATCAGTCGACCCATTTCAATGTGTCCAACACAGTGATTGACCGGAATGATGGGTTTTTGCCATCGGAGGGACAGTGTACGAGCGACGATGGCGCCAACCTGCAAAAAAATGGGTCTGTTAGACTACAAACTACACTTCCTYAATTTTAAGAGTCTCAAGTTGGGATTGCTAGACCCGTTTGTGGTCCAGCAGGCGCCCCTCAACTTCCTCCGCTTGTTAGGAAAAATGGGTCTGCTAGACTACAAACTACGATTCTCGAATTAGCAGACCAATTTTGATCATTTCTCCGCTATTTTTGCCTAATTTAGTTCAAATTTTCTTGAATTTTCACCTGTAGGGGTGCTCCCATCCCAGGTCCTTTGGTGAATGCGATTCCATCGATTTCCTTCTCCGGATCCTGAATTCCAGCCTCACGAATCGCCTCTCCAACTAGACGAACGATCTGTTGCCGATGATGTTGAGCGGTTTCCGTTGGCCGGAATCCTTCTCCGGGCGGCGCATGAAATGTGGCCCGTGGATTCGAGAGAACGACGCCGTCACGAATGATACCGACCTGGAAAAAGTGTGTAGTTTGTAGTCTGATTGTCTTATTGCTAGAAAAAACAGAATAAAAAACGAGAAAAATGCTTGTTTTCAGGCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>499 495 6</canonical_bands>
                <polymorphic_bands>505 495</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCACATACAAAACAACAGGATTA</pcr_primer_p1>
		<pcr_primer_p2>CAAAAATAGCGGAGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>333</pcr_amplicon_size>
		<canonical_amplicon>TCACATACAAAACAACAGGATTATCCGCCCCCGTGATCAGTCGACCCATTTCAATGTGTCCAACACAGTGATTGACCGGAATGATGGGTTTTTGCCATCGGAGGGACAGTGTACGAGCGACGATGGCGCCAACCTGCAAAAAAATGGGTCTGTTAGACTACAAACTACACTTCCTTAATTTTAAGAGTCTCAAGTTGGGATTGCTAGACCCGTTTGTGGTCCAGCAGGCGCCCCTCAACTTCCTCCGCTTGTTAGGAAAAATGGGTCTGCTAGACTACAAACTACGATTCTCGAATTAGCAGACCAATTTTGATCATTTCTCCGCTATTTTTG</canonical_amplicon>
		<polymorphic_amplicon>TCACATACAAAACAACAGGATTATCCGCCCCCGTGATCAGTCGACCCATTTCAATGTGTCCAACACAGTGATTGACCGGAATGATGGGTTTTTGCCATCGGAGGGACAGTGTACGAGCGACGATGGCGCCAACCTGCAAAAAAATGGGTCTGTTAGACTACAAACTACACTTCCTYAATTTTAAGAGTCTCAAGTTGGGATTGCTAGACCCGTTTGTGGTCCAGCAGGCGCCCCTCAACTTCCTCCGCTTGTTAGGAAAAATGGGTCTGCTAGACTACAAACTACGATTCTCGAATTAGCAGACCAATTTTGATCATTTCTCCGCTATTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2954</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>873635</contig_pos>
        <strand>+</strand>
        <context>AACTACACTT[C/T]CTYAATTTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGGCGCCAACCTGCAAAAAAATGGGTCTGTTAGACTACAAACTACACTT</left_flank>
        <right_flank>CTTAATTTTAAGAGTCTCAAGTTGGGATTGCTAGACCCGTTTGTGGTCCA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTACAATTTCATAAATAGCAGACCAAAACCAAAAAAAAGCCCACTTTTCGTGTAAAATTTGTTATTTTTTCTGAAATTTCTTCAAATTTCAAAAATGGGTCTGCTAGGCAAACTACATTTCATATAATTAGCAGACCAAAACCAAAAAAACGCATTTTTCGCCTAAAATCCATAATTTTCGATCAATCTTCTCGATTTCTTTTCACAAACCTGTGTATTTCCACCGCTCACATACAAAACAACAGGATTATCCGCCCCCGTGATCAGTCGACCCATTTCAATGTGTCCAACACAGTGATTGACCGGAATGATGGGTTTTTGCCATCGGAGGGACAGTGTACGAGCGACGATGGCGCCAACCTGCAAAAAAATGGGTCTGTTAGACTACAAACTACACTTCCTTAATTTTAAGAGTCTCAAGTTGGGATTGCTAGACCCGTTTGTGGTCCAGCAGGCGCCCCTCAACTTCCTCCGCTTGTTAGGAAAAATGGGTCTGCTAGACTACAAACTACGATTCTCGAATTAGCAGACCAATTTTGATCATTTCTCCGCTATTTTTGCCTAATTTAGTTCAAATTTTCTTGAATTTTCACCTGTAGGGGTGCTCCCATCCCAGGTCCTTTGGTGAATGCGATTCCATCGATTTCCTTCTCCGGATCCTGAATTCCAGCCTCACGAATCGCCTCTCCAACTAGACGAACGATCTGTTGCCGATGATGTTGAGCGGTTTCCGTTGGCCGGAATCCTTCTCCGGGCGGCGCATGAAATGTGGCCCGTGGATTCGAGAGAACGACGCCGTCACGAATGATACCGACCTGGAAAAAGTGTGTAGTTTGTAGTCTGATTGTCTTATTGCTAGAAAAAACAGAATAAAAAACGAGAAAAATGCTTGTTTTCAGG</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTACAATTTCATAAATAGCAGACCAAAACCAAAAAAAAGCCCACTTTTCGTGTAAAATTTGTTATTTTTTCTGAAATTTCTTCAAATTTCAAAAATGGGTCTGCTAGGCAAACTACATTTCATATAATTAGCAGACCAAAACCAAAAAAACGCATTTTTCGCCTAAAATCCATAATTTTCGATCAATCTTCTCGATTTCTTTTCACAAACCTGTGTATTTCCACCGCTCACATACAAAACAACAGGATTATCCGCCCCCGTGATCAGTCGACCCATTTCAATGTGTCCAACACAGTGATTGACCGGAATGATGGGTTTTTGCCATCGGAGGGACAGTGTACGAGCGACGATGGCGCCAACCTGCAAAAAAATGGGTCTGTTAGACTACAAACTACACTTYCTTAATTTTAAGAGTCTCAAGTTGGGATTGCTAGACCCGTTTGTGGTCCAGCAGGCGCCCCTCAACTTCCTCCGCTTGTTAGGAAAAATGGGTCTGCTAGACTACAAACTACGATTCTCGAATTAGCAGACCAATTTTGATCATTTCTCCGCTATTTTTGCCTAATTTAGTTCAAATTTTCTTGAATTTTCACCTGTAGGGGTGCTCCCATCCCAGGTCCTTTGGTGAATGCGATTCCATCGATTTCCTTCTCCGGATCCTGAATTCCAGCCTCACGAATCGCCTCTCCAACTAGACGAACGATCTGTTGCCGATGATGTTGAGCGGTTTCCGTTGGCCGGAATCCTTCTCCGGGCGGCGCATGAAATGTGGCCCGTGGATTCGAGAGAACGACGCCGTCACGAATGATACCGACCTGGAAAAAGTGTGTAGTTTGTAGTCTGATTGTCTTATTGCTAGAAAAAACAGAATAAAAAACGAGAAAAATGCTTGTTTTCAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCACATACAAAACAACAGGATTA</pcr_primer_p1>
		<pcr_primer_p2>CAAAAATAGCGGAGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>333</pcr_amplicon_size>
		<canonical_amplicon>TCACATACAAAACAACAGGATTATCCGCCCCCGTGATCAGTCGACCCATTTCAATGTGTCCAACACAGTGATTGACCGGAATGATGGGTTTTTGCCATCGGAGGGACAGTGTACGAGCGACGATGGCGCCAACCTGCAAAAAAATGGGTCTGTTAGACTACAAACTACACTTCCTTAATTTTAAGAGTCTCAAGTTGGGATTGCTAGACCCGTTTGTGGTCCAGCAGGCGCCCCTCAACTTCCTCCGCTTGTTAGGAAAAATGGGTCTGCTAGACTACAAACTACGATTCTCGAATTAGCAGACCAATTTTGATCATTTCTCCGCTATTTTTG</canonical_amplicon>
		<polymorphic_amplicon>TCACATACAAAACAACAGGATTATCCGCCCCCGTGATCAGTCGACCCATTTCAATGTGTCCAACACAGTGATTGACCGGAATGATGGGTTTTTGCCATCGGAGGGACAGTGTACGAGCGACGATGGCGCCAACCTGCAAAAAAATGGGTCTGTTAGACTACAAACTACACTTYCTTAATTTTAAGAGTCTCAAGTTGGGATTGCTAGACCCGTTTGTGGTCCAGCAGGCGCCCCTCAACTTCCTCCGCTTGTTAGGAAAAATGGGTCTGCTAGACTACAAACTACGATTCTCGAATTAGCAGACCAATTTTGATCATTTCTCCGCTATTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2955</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>873615</contig_pos>
        <strand>+</strand>
        <context>AATGGGTCTG[C/T]TAGACTACAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGACAGTGTACGAGCGACGATGGCGCCAACCTGCAAAAAAATGGGTCTG</left_flank>
        <right_flank>TAGACTACAAACTACACTTCCTTAATTTTAAGAGTCTCAAGTTGGGATTG</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTACAATTTCATAAATAGCAGACCAAAACCAAAAAAAAGCCCACTTTTCGTGTAAAATTTGTTATTTTTTCTGAAATTTCTTCAAATTTCAAAAATGGGTCTGCTAGGCAAACTACATTTCATATAATTAGCAGACCAAAACCAAAAAAACGCATTTTTCGCCTAAAATCCATAATTTTCGATCAATCTTCTCGATTTCTTTTCACAAACCTGTGTATTTCCACCGCTCACATACAAAACAACAGGATTATCCGCCCCCGTGATCAGTCGACCCATTTCAATGTGTCCAACACAGTGATTGACCGGAATGATGGGTTTTTGCCATCGGAGGGACAGTGTACGAGCGACGATGGCGCCAACCTGCAAAAAAATGGGTCTGTTAGACTACAAACTACACTTCCTTAATTTTAAGAGTCTCAAGTTGGGATTGCTAGACCCGTTTGTGGTCCAGCAGGCGCCCCTCAACTTCCTCCGCTTGTTAGGAAAAATGGGTCTGCTAGACTACAAACTACGATTCTCGAATTAGCAGACCAATTTTGATCATTTCTCCGCTATTTTTGCCTAATTTAGTTCAAATTTTCTTGAATTTTCACCTGTAGGGGTGCTCCCATCCCAGGTCCTTTGGTGAATGCGATTCCATCGATTTCCTTCTCCGGATCCTGAATTCCAGCCTCACGAATCGCCTCTCCAACTAGACGAACGATCTGTTGCCGATGATGTTGAGCGGTTTCCGTTGGCCGGAATCCTTCTCCGGGCGGCGCATGAAATGTGGCCCGTGGATTCGAGAGAACGACGCCGTCACGAATGATACCGACCTGGAAAAAGTGTGTAGTTTGTAGTCTGATTGTCTTATTGCTAGAAAAAACAGAATAAAAAACGA</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTACAATTTCATAAATAGCAGACCAAAACCAAAAAAAAGCCCACTTTTCGTGTAAAATTTGTTATTTTTTCTGAAATTTCTTCAAATTTCAAAAATGGGTCTGCTAGGCAAACTACATTTCATATAATTAGCAGACCAAAACCAAAAAAACGCATTTTTCGCCTAAAATCCATAATTTTCGATCAATCTTCTCGATTTCTTTTCACAAACCTGTGTATTTCCACCGCTCACATACAAAACAACAGGATTATCCGCCCCCGTGATCAGTCGACCCATTTCAATGTGTCCAACACAGTGATTGACCGGAATGATGGGTTTTTGCCATCGGAGGGACAGTGTACGAGCGACGATGGCGCCAACCTGCAAAAAAATGGGTCTGYTAGACTACAAACTACACTTCCTTAATTTTAAGAGTCTCAAGTTGGGATTGCTAGACCCGTTTGTGGTCCAGCAGGCGCCCCTCAACTTCCTCCGCTTGTTAGGAAAAATGGGTCTGCTAGACTACAAACTACGATTCTCGAATTAGCAGACCAATTTTGATCATTTCTCCGCTATTTTTGCCTAATTTAGTTCAAATTTTCTTGAATTTTCACCTGTAGGGGTGCTCCCATCCCAGGTCCTTTGGTGAATGCGATTCCATCGATTTCCTTCTCCGGATCCTGAATTCCAGCCTCACGAATCGCCTCTCCAACTAGACGAACGATCTGTTGCCGATGATGTTGAGCGGTTTCCGTTGGCCGGAATCCTTCTCCGGGCGGCGCATGAAATGTGGCCCGTGGATTCGAGAGAACGACGCCGTCACGAATGATACCGACCTGGAAAAAGTGTGTAGTTTGTAGTCTGATTGTCTTATTGCTAGAAAAAACAGAATAAAAAACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTTCTCGATTTCTTTTCACA</pcr_primer_p1>
		<pcr_primer_p2>GTCTAGCAATCCCAACTTGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATCTTCTCGATTTCTTTTCACAAACCTGTGTATTTCCACCGCTCACATACAAAACAACAGGATTATCCGCCCCCGTGATCAGTCGACCCATTTCAATGTGTCCAACACAGTGATTGACCGGAATGATGGGTTTTTGCCATCGGAGGGACAGTGTACGAGCGACGATGGCGCCAACCTGCAAAAAAATGGGTCTGTTAGACTACAAACTACACTTCCTTAATTTTAAGAGTCTCAAGTTGGGATTGCTAGAC</canonical_amplicon>
		<polymorphic_amplicon>ATCTTCTCGATTTCTTTTCACAAACCTGTGTATTTCCACCGCTCACATACAAAACAACAGGATTATCCGCCCCCGTGATCAGTCGACCCATTTCAATGTGTCCAACACAGTGATTGACCGGAATGATGGGTTTTTGCCATCGGAGGGACAGTGTACGAGCGACGATGGCGCCAACCTGCAAAAAAATGGGTCTGYTAGACTACAAACTACACTTCCTTAATTTTAAGAGTCTCAAGTTGGGATTGCTAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2956</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>900169</contig_pos>
        <strand>+</strand>
        <context>CAATGACCAA[A/G]TCAAACAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATAGGTCAGCAACTCCTTGATCTCCAAATAATTAACAGCAATGACCAA</left_flank>
        <right_flank>TCAAACAATTTCCCATCCTTATCAATTCCCTCCAAGAACTTCTGATCCCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGCCCCTTTGAAATAGTGCACAGGGTAACTTTAAAGGCGCATATCTCACGAACCGGTTGAGCTAACAAAAAGATAAAAATACCAAAATGTGTAAAATTTCAAGTTCTATCTTTTGTAAGTTGACCATTTTTATCTAGCTGTTTTAGTTTTGAAGATATGACAAGAAAAATTTATTGATGTTCTAAAAAAGGGGAAAAATAGAGGGGCGTACGGTTTAAGGTACTAGGGGGTAAGTAAGAAAATTCAAATTCAAATAATTATTTGGCATCGGATGTAGATGGTGCTTCTCCTTCTCCAGCAGCAGCAGTCTCTCCAGCAGCCTCTTTCTTGGCCCTCTCCTTGGCCTCCTTCTCAGCCGCCGCATCCTCCTCATCAGTTGGAATCATATAAATCTCGCGAATCTCTTCTGGAGACTTCCCTTTAATCATCATGGCCACCTGCTTGCAGCAATAGGTCAGCAACTCCTTGATCTCCAAATAATTAACAGCAATGACCAAGTCAAACAATTTCCCATCCTTATCAATTCCCTCCAAGAACTTCTGATCCCATTCTGGAACGTTGACCTGTTTTGGAGGCTTGTATCTTCTGGAGGCGTTGGAATCCCCTTGTGATGCTCACACCACTCCACTGCGATCTTGAGAATGTCTCCGTCAATGTTGTCGAATGGGAATGGGTTGGCTTTGGCTTGTTCCTCAGTGTAGCCGAGGTTGGAAATCATTCCATCGATCAGGGCAGAGTGTTGAAGGGCGCCAGCACTGACTTTGATGACGACCTTGTCTTTGCCGTGAACGTAGTAGAACGATTCGGGGGCTTCTGGAGCAGCAACAGATTCTGGGGCAGTGGTTGGTTCAGCAGGGGAAGCAGAAGACGTTCCTTGTTCGGTAGAAGACATGATGATGTTGGAGAATTTCAAGTTAGCTGAAATTAAAGGGACATTAGGAAGGTGTATAAAGCGGGAAATAAGAAAAAAAGAGAATAAAAAGCATTAGAGATAGAAG</canonical>
            <polymorphic>AGAGCCCCTTTGAAATAGTGCACAGGGTAACTTTAAAGGCGCATATCTCACGAACCGGTTGAGCTAACAAAAAGATAAAAATACCAAAATGTGTAAAATTTCAAGTTCTATCTTTTGTAAGTTGACCATTTTTATCTAGCTGTTTTAGTTTTGAAGATATGACAAGAAAAATTTATTGATGTTCTAAAAAAGGGGAAAAATAGAGGGGCGTACGGTTTAAGGTACTAGGGGGTAAGTAAGAAAATTCAAATTCAAATAATTATTTGGCATCGGATGTAGATGGTGCTTCTCCTTCTCCAGCAGCAGCAGTCTCTCCAGCAGCCTCTTTCTTGGCCCTCTCCTTGGCCTCCTTCTCAGCCGCCGCATCCTCCTCATCAGTTGGAATCATATAAATCTCGCGAATCTCTTCTGGAGACTTCCCTTTAATCATCATGGCCACCTGCTTGCAGCAATAGGTCAGCAACTCCTTGATCTCCAAATAATTAACAGCAATGACCAARTCAAACAATTTCCCATCCTTATCAATTCCCTCCAAGAACTTCTGATCCCATTCTGGAACGTTGACCTGTTTTGGAGGCTTGTATCTTCTGGAGGCGTTGGAATCCCCTTGTGATGCTCACACCACTCCACTGCGATCTTGAGAATGTCTCCGTCAATGTTGTCGAATGGGAATGGGTTGGCTTTGGCTTGTTCCTCAGTGTAGCCGAGGTTGGAAATCATTCCATCGATCAGGGCAGAGTGTTGAAGGGCGCCAGCACTGACTTTGATGACGACCTTGTCTTTGCCGTGAACGTAGTAGAACGATTCGGGGGCTTCTGGAGCAGCAACAGATTCTGGGGCAGTGGTTGGTTCAGCAGGGGAAGCAGAAGACGTTCCTTGTTCGGTAGAAGACATGATGATGTTGGAGAATTTCAAGTTAGCTGAAATTAAAGGGACATTAGGAAGGTGTATAAAGCGGGAAATAAGAAAAAAAGAGAATAAAAAGCATTAGAGATAGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNGTC</site>
                <isoschizomers>
                    <enzyme>AspI</enzyme>
                    <enzyme>PflFI</enzyme>
                    <enzyme>PsyI</enzyme>
                    <enzyme>TelI</enzyme>
                    <enzyme>Tth111I</enzyme>
                </isoschizomers>
                <canonical_bands>497 278 225</canonical_bands>
                <polymorphic_bands>775 225</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCTGGAGACTTCCCTTTAAT</pcr_primer_p1>
		<pcr_primer_p2>GACATTCTCAAGATCGCAGT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTTCTGGAGACTTCCCTTTAATCATCATGGCCACCTGCTTGCAGCAATAGGTCAGCAACTCCTTGATCTCCAAATAATTAACAGCAATGACCAAGTCAAACAATTTCCCATCCTTATCAATTCCCTCCAAGAACTTCTGATCCCATTCTGGAACGTTGACCTGTTTTGGAGGCTTGTATCTTCTGGAGGCGTTGGAATCCCCTTGTGATGCTCACACCACTCCACTGCGATCTTGAGAATGTC</canonical_amplicon>
		<polymorphic_amplicon>CTTCTGGAGACTTCCCTTTAATCATCATGGCCACCTGCTTGCAGCAATAGGTCAGCAACTCCTTGATCTCCAAATAATTAACAGCAATGACCAARTCAAACAATTTCCCATCCTTATCAATTCCCTCCAAGAACTTCTGATCCCATTCTGGAACGTTGACCTGTTTTGGAGGCTTGTATCTTCTGGAGGCGTTGGAATCCCCTTGTGATGCTCACACCACTCCACTGCGATCTTGAGAATGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2957</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>911157</contig_pos>
        <strand>+</strand>
        <context>aaatttcCTA[A/G]TACACACAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGTTTAGGCTCATTTCAAAGCATTTGTCACGAGGATTCCAAATTTCCTA</left_flank>
        <right_flank>TACACACAATCTCTGAATTCTGAAATTTTCAGCGTGGGCGAGCGACAACT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGATTTAGATTTAGCGTGAAAAATCCTTTAAAATGATTATAAGCACGAATAGACTCCGCCCATTTTCAAATTTTGTCGAATTTTGACTTTAAAGGTGCATAGGGGGTTCGAATCTGAAAATTCCAGGAAAGTAGGTCATGATTATACTCATTTTAAAACTGAAACTCTAATAAATACAAAAATCGCACTTTTACACAGAAAACTTGATAAATAAAAAAGTTATTGGGAAAGCAAGATTTTGGAAATTTTTTTGAAATTTTTAGTTTTCCTTATAACTTTTTCAGATTTCAACATTTTCCGTTAAAACTTAATTTTTCGTGTTTTTCGCGTTGAGAGCTTCAAAATGAGTATAAACATGACCTACCCCCGAGAGTCAGGTGTTAGGACCCCTCATGGGGGCCCATGCGCCTTTAAAGTCGGAAAATTCGAAATGGGAGGAGCCTAGTCGTGTTTAGGCTCATTTCAAAGCATTTGTCACGAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGAAATTTTCAGCGTGGGCGAGCGACAACTGCTCTGCCTGTGCCGAGCGTTGCTCCGCGGAGCCCGAATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGA</canonical>
            <polymorphic>AAAGATTTAGATTTAGCGTGAAAAATCCTTTAAAATGATTATAAGCACGAATAGACTCCGCCCATTTTCAAATTTTGTCGAATTTTGACTTTAAAGGTGCATAGGGGGTTCGAATCTGAAAATTCCAGGAAAGTAGGTCATGATTATACTCATTTTAAAACTGAAACTCTAATAAATACAAAAATCGCACTTTTACACAGAAAACTTGATAAATAAAAAAGTTATTGGGAAAGCAAGATTTTGGAAATTTTTTTGAAATTTTTAGTTTTCCTTATAACTTTTTCAGATTTCAACATTTTCCGTTAAAACTTAATTTTTCGTGTTTTTCGCGTTGAGAGCTTCAAAATGAGTATAAACATGACCTACCCCCGAGAGTCAGGTGTTAGGACCCCTCATGGGGGCCCATGCGCCTTTAAAGTCGGAAAATTCGAAATGGGAGGAGCCTAGTCGTGTTTAGGCTCATTTCAAAGCATTTGTCACGAGGATTCCAAATTTCCTARTACACACAATCTCTGAATTCTGAAATTTTCAGCGTGGGCGAGCGACAACTGCTCTGCCTGTGCCGAGCGTTGCTCCGCGGAGCCCGAATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>444 421 82 53</canonical_bands>
                <polymorphic_bands>474 444 82</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 284 214</canonical_bands>
                <polymorphic_bands>716 284</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAATATGAGGTACGGTATTTG</pcr_primer_p1>
		<pcr_primer_p2>CGGTTACAGTATCCACAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>666</pcr_amplicon_size>
		<canonical_amplicon>AGTACACACAATCTCTGAATTCTGAAATTTTCAGCGTGGGCGAGCGACAACTGCTCTGCCTGTGCCGAGCGTTGCTCCGCGGAGCCCGAATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCG</canonical_amplicon>
		<polymorphic_amplicon>ARTACACACAATCTCTGAATTCTGAAATTTTCAGCGTGGGCGAGCGACAACTGCTCTGCCTGTGCCGAGCGTTGCTCCGCGGAGCCCGAATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2958</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>911337</contig_pos>
        <strand>+</strand>
        <context>CCAAATCCAC[A/G]ACAATTTCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCAC</left_flank>
        <right_flank>ACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATCGCACTTTTACACAGAAAACTTGATAAATAAAAAAGTTATTGGGAAAGCAAGATTTTGGAAATTTTTTTGAAATTTTTAGTTTTCCTTATAACTTTTTCAGATTTCAACATTTTCCGTTAAAACTTAATTTTTCGTGTTTTTCGCGTTGAGAGCTTCAAAATGAGTATAAACATGACCTACCCCCGAGAGTCAGGTGTTAGGACCCCTCATGGGGGCCCATGCGCCTTTAAAGTCGGAAAATTCGAAATGGGAGGAGCCTAGTCGTGTTTAGGCTCATTTCAAAGCATTTGTCACGAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGAAATTTTCAGCGTGGGCGAGCGACAACTGCTCTGCCTGTGCCGAGCGTTGCTCCGCGGAGCCCGAATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCT</canonical>
            <polymorphic>AAAATCGCACTTTTACACAGAAAACTTGATAAATAAAAAAGTTATTGGGAAAGCAAGATTTTGGAAATTTTTTTGAAATTTTTAGTTTTCCTTATAACTTTTTCAGATTTCAACATTTTCCGTTAAAACTTAATTTTTCGTGTTTTTCGCGTTGAGAGCTTCAAAATGAGTATAAACATGACCTACCCCCGAGAGTCAGGTGTTAGGACCCCTCATGGGGGCCCATGCGCCTTTAAAGTCGGAAAATTCGAAATGGGAGGAGCCTAGTCGTGTTTAGGCTCATTTCAAAGCATTTGTCACGAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGAAATTTTCAGCGTGGGCGAGCGACAACTGCTCTGCCTGTGCCGAGCGTTGCTCCGCGGAGCCCGAATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACRACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACTGTAACCGATGGAATTGT</pcr_primer_p1>
		<pcr_primer_p2>AAACTTACCTATCCGAGTCTACG</pcr_primer_p2>
		<pcr_amplicon_size>114</pcr_amplicon_size>
		<canonical_amplicon>ATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACRACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2959</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>966060</contig_pos>
        <strand></strand>
        <context>GTAAAATTTT[G/A]TTTTTCAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAAAGACACAAATGCCCCATTCAAAATCAAAAGAGCCAGGTAAAATTTT</left_flank>
        <right_flank>TTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTTTTTTTGGAAAATTTTCAAATTTTGGATTTTTCAAATATTTCGATTTCTGACATCTAGAATGTTTTAGGAACGTCTGAAATTGCTCTAAAAAAGAAGCAAAAAAGTTTGCCACCGAGAGGAATCGAACCCGGGTCGTTAGATTGGTAGTGGAATCTTCGAAAATCCCACTGAGCCATACGGGCATTTTTTTGAAAAATCGCATAAAAACACTGGAAAAACGGCATTTTTCGAGGTGGAAACTATTATCGTCATTTTTCTCAAGTTTTTTTGGTTTAAAAGTTTTATTTTCAATCAAATTTTGAAAATTTTTTTTCAAAAATTATGATTTTTTCAAAATTGCTTTCATTTTTCTTCAGTTTTCCATCAGCTGTTTGTTTCAAGTGTTAAAAGTTTTTGTTTCAATACCCCTTTTTTCAGATTCCTATTCAAAATGGATCACATCAAAAAGACACAAATGCCCCATTCAAAATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTTTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACACGGCTAGGCTTCGCCTTGTTTAGTTTTTTGACAATTTTTGACTTTAAAGGCGCAGAGGGGGTCCGAATTTTGAAATTAGAGGAAAGTAGGTCATGTTTATACTCATTTCGTAGCTTAAAACGTGAGAAATTCAATAATTTTAATTTCAGTCCGAAATAATGAAAATACAGAAAGTTATGAGGAAAACTAAAAATTTCAGAAAAATTTCGAAAGCTTTGTTTTCCCCATAACTTTCTTATTTCACAAGATTTTCGAATAAAAATTGATTTTCTATTATTTCACATTAAATGCTTCAAAATGAGTATAATCATGACCCACTTCCCTCGAATTTCTAAATTCCGACCCCCCATGCGCCTTTAAAGTCCAAAAATCAAAGTGGGCGGAGCCTAATCGT</canonical>
            <polymorphic>AAATTTTTTTTTGGAAAATTTTCAAATTTTGGATTTTTCAAATATTTCGATTTCTGACATCTAGAATGTTTTAGGAACGTCTGAAATTGCTCTAAAAAAGAAGCAAAAAAGTTTGCCACCGAGAGGAATCGAACCCGGGTCGTTAGATTGGTAGTGGAATCTTCGAAAATCCCACTGAGCCATACGGGCATTTTTTTGAAAAATCGCATAAAAACACTGGAAAAACGGCATTTTTCGAGGTGGAAACTATTATCGTCATTTTTCTCAAGTTTTTTTGGTTTAAAAGTTTTATTTTCAATCAAATTTTGAAAATTTTTTTTCAAAAATTATGATTTTTTCAAAATTGCTTTCATTTTTCTTCAGTTTTCCATCAGCTGTTTGTTTCAAGTGTTAAAAGTTTTTGTTTCAATACCCCTTTTTTCAGATTCCTATTCAAAATGGATCACATCAAAAAGACACAAATGCCCCATTCAAAATCAAAAGAGCCAGGTAAAATTTTRTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTTTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACACGGCTAGGCTTCGCCTTGTTTAGTTTTTTGACAATTTTTGACTTTAAAGGCGCAGAGGGGGTCCGAATTTTGAAATTAGAGGAAAGTAGGTCATGTTTATACTCATTTCGTAGCTTAAAACGTGAGAAATTCAATAATTTTAATTTCAGTCCGAAATAATGAAAATACAGAAAGTTATGAGGAAAACTAAAAATTTCAGAAAAATTTCGAAAGCTTTGTTTTCCCCATAACTTTCTTATTTCACAAGATTTTCGAATAAAAATTGATTTTCTATTATTTCACATTAAATGCTTCAAAATGAGTATAATCATGACCCACTTCCCTCGAATTTCTAAATTCCGACCCCCCATGCGCCTTTAAAGTCCAAAAATCAAAGTGGGCGGAGCCTAATCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCACATCAAAAAGACACAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGGCGAAATCTGAAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>675</pcr_amplicon_size>
		<canonical_amplicon>GATCACATCAAAAAGACACAAATGCCCCATTCAAAATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>GATCACATCAAAAAGACACAAATGCCCCATTCAAAATCAAAAGAGCCAGGTAAAATTTTRTTTTTCAAAATTCAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2961</snp_id>
        <super_contig>c001001125.Contig1</super_contig>
        <contig_pos>26354</contig_pos>
        <strand>+</strand>
        <context>CAGCGAATTT[C/T]CGCAAAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTCCGGAACAGTTTTCAGGGAAAAATACACCGTTTTTCAGCGAATTT</left_flank>
        <right_flank>CGCAAAAAAAAACGTGAAAAATAATAATTTTCCAGGCGAAAACATGTCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAGAAGGGAGCAGCTGGGACACTGTGCGACGTCTTCGCCCATTTCTAGCATTTCTCTGAAATTTTCGACTTTTTTTGAATTATAAAGCTTTTCATTTAATAACCTAGCAATTTCAAATCGATCGCACACGGACATGGGTAGTGATAGACGTCCTTCTCCTCGTCGAACTCGAAATCCTCGATTTCGACTTCATCGTGGAACACCGACATCTTTTCGGGTTACCTGGAAGGAAAAATCAGATTTTTAGAGTGAAAAATTTGTTTAAAATCATAGAAATTAAGTTAAAGCCCGAAAATTATGCAAGATTTCGAAAGAAATTCCCGAAAAAATAAAATAAAAATCACATGAAGTCCGCAATAAGTCGTCTCGGTGTGCGTGCGCCCCCTCCGCAAACACCATCGTCTACCGTACCTTCGCTTTTCGTAATTTTTCTCAACGAATTTCTTTATTTTCCGGAACAGTTTTCAGGGAAAAATACACCGTTTTTCAGCGAATTTCCGCAAAAAAAAACGTGAAAAATAATAATTTTCCAGGCGAAAACATGTCTCGCAGGGAGATTTTCCCCCTGCGCACCACGGAGACAATGAAAATGATTCCCGACGATCAGTTGCAGTATGTCTATCGTCGGAATAAAGAAATTCAAGATTTGCTGCGAGATTTTGATAGAAATCACATGCGCGGAACCTATGAGCCAATGGTTTTGCTGAAAAAGTAATTTTTAAAAAAATTTGAAATTTTTTAAAAATTTTAAAAATTTAGTTTGTCTGAAATCCTAGAAGAAGCCACAGCGGTATTCATCAGCAATGATCCCGACCCGCTAGACGATCGTCATCCACACAGGACGCATCCAGATTCAGCGTTAGGAAATCTATTGAAGACAATTTTCAAAAATGACGATTTTATGACTTCTGTAAGGTCTAAAAATTTGAATTTTGGCTTAAAAGATGCGCAATTTTCAGCTCGTTGTCTCCTATATCTTGGTTAGAGACAATGTGGAG</canonical>
            <polymorphic>ATCAGAAGGGAGCAGCTGGGACACTGTGCGACGTCTTCGCCCATTTCTAGCATTTCTCTGAAATTTTCGACTTTTTTTGAATTATAAAGCTTTTCATTTAATAACCTAGCAATTTCAAATCGATCGCACACGGACATGGGTAGTGATAGACGTCCTTCTCCTCGTCGAACTCGAAATCCTCGATTTCGACTTCATCGTGGAACACCGACATCTTTTCGGGTTACCTGGAAGGAAAAATCAGATTTTTAGAGTGAAAAATTTGTTTAAAATCATAGAAATTAAGTTAAAGCCCGAAAATTATGCAAGATTTCGAAAGAAATTCCCGAAAAAATAAAATAAAAATCACATGAAGTCCGCAATAAGTCGTCTCGGTGTGCGTGCGCCCCCTCCGCAAACACCATCGTCTACCGTACCTTCGCTTTTCGTAATTTTTCTCAACGAATTTCTTTATTTTCCGGAACAGTTTTCAGGGAAAAATACACCGTTTTTCAGCGAATTTYCGCAAAAAAAAACGTGAAAAATAATAATTTTCCAGGCGAAAACATGTCTCGCAGGGAGATTTTCCCCCTGCGCACCACGGAGACAATGAAAATGATTCCCGACGATCAGTTGCAGTATGTCTATCGTCGGAATAAAGAAATTCAAGATTTGCTGCGAGATTTTGATAGAAATCACATGCGCGGAACCTATGAGCCAATGGTTTTGCTGAAAAAGTAATTTTTAAAAAAATTTGAAATTTTTTAAAAATTTTAAAAATTTAGTTTGTCTGAAATCCTAGAAGAAGCCACAGCGGTATTCATCAGCAATGATCCCGACCCGCTAGACGATCGTCATCCACACAGGACGCATCCAGATTCAGCGTTAGGAAATCTATTGAAGACAATTTTCAAAAATGACGATTTTATGACTTCTGTAAGGTCTAAAAATTTGAATTTTGGCTTAAAAGATGCGCAATTTTCAGCTCGTTGTCTCCTATATCTTGGTTAGAGACAATGTGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>354 317 183 111 35</canonical_bands>
                <polymorphic_bands>428 354 183 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTTTCGTAATTTTTCTCAAC</pcr_primer_p1>
		<pcr_primer_p2>CAGCAAATCTTGAATTTCTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GCTTTTCGTAATTTTTCTCAACGAATTTCTTTATTTTCCGGAACAGTTTTCAGGGAAAAATACACCGTTTTTCAGCGAATTTCCGCAAAAAAAAACGTGAAAAATAATAATTTTCCAGGCGAAAACATGTCTCGCAGGGAGATTTTCCCCCTGCGCACCACGGAGACAATGAAAATGATTCCCGACGATCAGTTGCAGTATGTCTATCGTCGGAATAAAGAAATTCAAGATTTGCTG</canonical_amplicon>
		<polymorphic_amplicon>GCTTTTCGTAATTTTTCTCAACGAATTTCTTTATTTTCCGGAACAGTTTTCAGGGAAAAATACACCGTTTTTCAGCGAATTTYCGCAAAAAAAAACGTGAAAAATAATAATTTTCCAGGCGAAAACATGTCTCGCAGGGAGATTTTCCCCCTGCGCACCACGGAGACAATGAAAATGATTCCCGACGATCAGTTGCAGTATGTCTATCGTCGGAATAAAGAAATTCAAGATTTGCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2962</snp_id>
        <super_contig>c001001125.Contig1</super_contig>
        <contig_pos>28049</contig_pos>
        <strand>+</strand>
        <context>CAACAAAAAT[C/T]GGCTGAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAAAACCCCAAATTTTCAGTTTCTCCGAGCTAAATTCTCAACAAAAAT</left_flank>
        <right_flank>GGCTGAAAATGGCGTGCCGAGTGCCAGTAACGGCTTCGAAATTCCATCGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATATATCTGAAAACGTCGAAATTTCGATTTTTTGGATTTTCCTGATATTTCAAAAATTTAATATTTTTTAGAAAAATTCAATTTTTTTTTCAGAATTTTCCCATTTTTGCAGTCAAGTTTGTGTAAAAATGTCAAAAAAAAATGCTGGAAAATTCGAAATTTCGATTTTTTGCCAAATTTCAATTTTTAATTTTTTTTGAAAAATTGTAAAAACTTTTACCAATTTCTGGAAAATTTCTAGAAAAAAAGAAACATTTCTGACATTTTAAAATAGAAAAATTGCAAAAAAAAACCTTATTTTTCCAGGTCCGTGCCTACGAGGAACACAACAATCTGGGCAACACAGAGTGAGTCTTTCTGGGCTTTTTCAGCCAAAGATTTGGCTGAAAATCCCTTTTTTCCGGCTTTCAGACCGGCTAAATTTGCTTTTCCTACCTATTTCTAGCTAAAAAACCCCAAATTTTCAGTTTCTCCGAGCTAAATTCTCAACAAAAATTGGCTGAAAATGGCGTGCCGAGTGCCAGTAACGGCTTCGAAATTCCATCGATTCAAGTGACGTCAAATGGAGAAAAAGAGAATGAAAAATTAGCAGCAGTAGTACCGCCGCCACCGAAGAAGAGACGAACTGAGGTTCGTTGAAAAAGCAGGAAAAACGGTCAAAAACCGGCAATTTCAAGTTAAAAATAGCCAAAAATGGCTTAAAACGGGCTAATTTAAACTATTTTTCTCGAAAATTTGAGAAAAAAATGGGTGAAAATGACCTAGTTTCAGCTATTTTCCTCAAAAAATATATCAAAATTGGCTGAAAAAACGATTTTTCGACAAAATCTTGAAGTTTTTTCCAGCTATTTTTTCTTCAAAAATTGAGAAAAATGGCAAAAATGGCTTGAAATGAGTTATTTTCAGCAAATTTCTTGTTAAAAATGACGAAAAATGGCTCAAAAATGGGCTATTTTTTCACTACTTTCTGTTTAAAATGACGAAAAAATATTTGAAA</canonical>
            <polymorphic>AAAATATATCTGAAAACGTCGAAATTTCGATTTTTTGGATTTTCCTGATATTTCAAAAATTTAATATTTTTTAGAAAAATTCAATTTTTTTTTCAGAATTTTCCCATTTTTGCAGTCAAGTTTGTGTAAAAATGTCAAAAAAAAATGCTGGAAAATTCGAAATTTCGATTTTTTGCCAAATTTCAATTTTTAATTTTTTTTGAAAAATTGTAAAAACTTTTACCAATTTCTGGAAAATTTCTAGAAAAAAAGAAACATTTCTGACATTTTAAAATAGAAAAATTGCAAAAAAAAACCTTATTTTTCCAGGTCCGTGCCTACGAGGAACACAACAATCTGGGCAACACAGAGTGAGTCTTTCTGGGCTTTTTCAGCCAAAGATTTGGCTGAAAATCCCTTTTTTCCGGCTTTCAGACCGGCTAAATTTGCTTTTCCTACCTATTTCTAGCTAAAAAACCCCAAATTTTCAGTTTCTCCGAGCTAAATTCTCAACAAAAATYGGCTGAAAATGGCGTGCCGAGTGCCAGTAACGGCTTCGAAATTCCATCGATTCAAGTGACGTCAAATGGAGAAAAAGAGAATGAAAAATTAGCAGCAGTAGTACCGCCGCCACCGAAGAAGAGACGAACTGAGGTTCGTTGAAAAAGCAGGAAAAACGGTCAAAAACCGGCAATTTCAAGTTAAAAATAGCCAAAAATGGCTTAAAACGGGCTAATTTAAACTATTTTTCTCGAAAATTTGAGAAAAAAATGGGTGAAAATGACCTAGTTTCAGCTATTTTCCTCAAAAAATATATCAAAATTGGCTGAAAAAACGATTTTTCGACAAAATCTTGAAGTTTTTTCCAGCTATTTTTTCTTCAAAAATTGAGAAAAATGGCAAAAATGGCTTGAAATGAGTTATTTTCAGCAAATTTCTTGTTAAAAATGACGAAAAATGGCTCAAAAATGGGCTATTTTTTCACTACTTTCTGTTTAAAATGACGAAAAAATATTTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>142 89 85 65 64 57 47 47 45 43 42 39 35 22 22 22 20 19 18 14 14 13 11 7 7 6 5</canonical_bands>
                <polymorphic_bands>142 89 85 65 64 57 56 47 47 45 42 39 35 22 22 22 20 19 18 14 14 11 7 7 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAACACAGAGTGAGTCTTTC</pcr_primer_p1>
		<pcr_primer_p2>AATTTTTCATTCTCTTTTTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCAACACAGAGTGAGTCTTTCTGGGCTTTTTCAGCCAAAGATTTGGCTGAAAATCCCTTTTTTCCGGCTTTCAGACCGGCTAAATTTGCTTTTCCTACCTATTTCTAGCTAAAAAACCCCAAATTTTCAGTTTCTCCGAGCTAAATTCTCAACAAAAATTGGCTGAAAATGGCGTGCCGAGTGCCAGTAACGGCTTCGAAATTCCATCGATTCAAGTGACGTCAAATGGAGAAAAAGAGAATGAAAAATT</canonical_amplicon>
		<polymorphic_amplicon>GCAACACAGAGTGAGTCTTTCTGGGCTTTTTCAGCCAAAGATTTGGCTGAAAATCCCTTTTTTCCGGCTTTCAGACCGGCTAAATTTGCTTTTCCTACCTATTTCTAGCTAAAAAACCCCAAATTTTCAGTTTCTCCGAGCTAAATTCTCAACAAAAATYGGCTGAAAATGGCGTGCCGAGTGCCAGTAACGGCTTCGAAATTCCATCGATTCAAGTGACGTCAAATGGAGAAAAAGAGAATGAAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2963</snp_id>
        <super_contig>c001001125.Contig1</super_contig>
        <contig_pos>28025</contig_pos>
        <strand>+</strand>
        <context>TTCAGTTTCT[C/T]CGAGCTAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGCTTTTCCTACCTATTTCTAGCTAAAAAACCCCAAATTTTCAGTTTCT</left_flank>
        <right_flank>CGAGCTAAATTCTCAACAAAAATTGGCTGAAAATGGCGTGCCGAGTGCCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAAAATTTAAAAAAATCTGAAAAATATATCTGAAAACGTCGAAATTTCGATTTTTTGGATTTTCCTGATATTTCAAAAATTTAATATTTTTTAGAAAAATTCAATTTTTTTTTCAGAATTTTCCCATTTTTGCAGTCAAGTTTGTGTAAAAATGTCAAAAAAAAATGCTGGAAAATTCGAAATTTCGATTTTTTGCCAAATTTCAATTTTTAATTTTTTTTGAAAAATTGTAAAAACTTTTACCAATTTCTGGAAAATTTCTAGAAAAAAAGAAACATTTCTGACATTTTAAAATAGAAAAATTGCAAAAAAAAACCTTATTTTTCCAGGTCCGTGCCTACGAGGAACACAACAATCTGGGCAACACAGAGTGAGTCTTTCTGGGCTTTTTCAGCCAAAGATTTGGCTGAAAATCCCTTTTTTCCGGCTTTCAGACCGGCTAAATTTGCTTTTCCTACCTATTTCTAGCTAAAAAACCCCAAATTTTCAGTTTCTCCGAGCTAAATTCTCAACAAAAATTGGCTGAAAATGGCGTGCCGAGTGCCAGTAACGGCTTCGAAATTCCATCGATTCAAGTGACGTCAAATGGAGAAAAAGAGAATGAAAAATTAGCAGCAGTAGTACCGCCGCCACCGAAGAAGAGACGAACTGAGGTTCGTTGAAAAAGCAGGAAAAACGGTCAAAAACCGGCAATTTCAAGTTAAAAATAGCCAAAAATGGCTTAAAACGGGCTAATTTAAACTATTTTTCTCGAAAATTTGAGAAAAAAATGGGTGAAAATGACCTAGTTTCAGCTATTTTCCTCAAAAAATATATCAAAATTGGCTGAAAAAACGATTTTTCGACAAAATCTTGAAGTTTTTTCCAGCTATTTTTTCTTCAAAAATTGAGAAAAATGGCAAAAATGGCTTGAAATGAGTTATTTTCAGCAAATTTCTTGTTAAAAATGACGAAAAATGGCTCAAAAATGGGCTATTTTTTCACTACTTTCTGTTT</canonical>
            <polymorphic>AAAAAAAAATTTAAAAAAATCTGAAAAATATATCTGAAAACGTCGAAATTTCGATTTTTTGGATTTTCCTGATATTTCAAAAATTTAATATTTTTTAGAAAAATTCAATTTTTTTTTCAGAATTTTCCCATTTTTGCAGTCAAGTTTGTGTAAAAATGTCAAAAAAAAATGCTGGAAAATTCGAAATTTCGATTTTTTGCCAAATTTCAATTTTTAATTTTTTTTGAAAAATTGTAAAAACTTTTACCAATTTCTGGAAAATTTCTAGAAAAAAAGAAACATTTCTGACATTTTAAAATAGAAAAATTGCAAAAAAAAACCTTATTTTTCCAGGTCCGTGCCTACGAGGAACACAACAATCTGGGCAACACAGAGTGAGTCTTTCTGGGCTTTTTCAGCCAAAGATTTGGCTGAAAATCCCTTTTTTCCGGCTTTCAGACCGGCTAAATTTGCTTTTCCTACCTATTTCTAGCTAAAAAACCCCAAATTTTCAGTTTCTYCGAGCTAAATTCTCAACAAAAATTGGCTGAAAATGGCGTGCCGAGTGCCAGTAACGGCTTCGAAATTCCATCGATTCAAGTGACGTCAAATGGAGAAAAAGAGAATGAAAAATTAGCAGCAGTAGTACCGCCGCCACCGAAGAAGAGACGAACTGAGGTTCGTTGAAAAAGCAGGAAAAACGGTCAAAAACCGGCAATTTCAAGTTAAAAATAGCCAAAAATGGCTTAAAACGGGCTAATTTAAACTATTTTTCTCGAAAATTTGAGAAAAAAATGGGTGAAAATGACCTAGTTTCAGCTATTTTCCTCAAAAAATATATCAAAATTGGCTGAAAAAACGATTTTTCGACAAAATCTTGAAGTTTTTTCCAGCTATTTTTTCTTCAAAAATTGAGAAAAATGGCAAAAATGGCTTGAAATGAGTTATTTTCAGCAAATTTCTTGTTAAAAATGACGAAAAATGGCTCAAAAATGGGCTATTTTTTCACTACTTTCTGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>499 167 151 84 64 22 13</canonical_bands>
                <polymorphic_bands>563 167 151 84 22 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAACACAGAGTGAGTCTTTC</pcr_primer_p1>
		<pcr_primer_p2>AATTTTTCATTCTCTTTTTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCAACACAGAGTGAGTCTTTCTGGGCTTTTTCAGCCAAAGATTTGGCTGAAAATCCCTTTTTTCCGGCTTTCAGACCGGCTAAATTTGCTTTTCCTACCTATTTCTAGCTAAAAAACCCCAAATTTTCAGTTTCTCCGAGCTAAATTCTCAACAAAAATTGGCTGAAAATGGCGTGCCGAGTGCCAGTAACGGCTTCGAAATTCCATCGATTCAAGTGACGTCAAATGGAGAAAAAGAGAATGAAAAATT</canonical_amplicon>
		<polymorphic_amplicon>GCAACACAGAGTGAGTCTTTCTGGGCTTTTTCAGCCAAAGATTTGGCTGAAAATCCCTTTTTTCCGGCTTTCAGACCGGCTAAATTTGCTTTTCCTACCTATTTCTAGCTAAAAAACCCCAAATTTTCAGTTTCTYCGAGCTAAATTCTCAACAAAAATTGGCTGAAAATGGCGTGCCGAGTGCCAGTAACGGCTTCGAAATTCCATCGATTCAAGTGACGTCAAATGGAGAAAAAGAGAATGAAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb2964</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>46619</contig_pos>
        <strand>+</strand>
        <context>GACGAAAAAC[A/T]ATATTTCTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGATTATCAATAGCAGCATAATAGTCAGCGTAATGAAAAGGACGAAAAAC</left_flank>
        <right_flank>ATATTTCTAGAAGCAAAAACTATAACCCAAAAGTTCAACCTATTAAGTAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGCTTGTCGTAGACAAATGTGGTTGTTGTTTTCTACTGGAATTTTTCAAAGTCTACCGATTTCAAATAATCGAACCTAGTATAATACGGAGTTGTAGGCGTAATTTCGGGTTTCCTAGTGGTAGACAGTAATATTTTCCTGAAACTTGATTCGAATCTTTACTTTCTAGAATACAAAGTCACCTAACAGAGGTACCGACATGCTTTGAAGTAGGGAGTGGCCTTTTCGTTGTTGTGGTGAATGGTGTTCTAAAATTTTGTGAACGGGAATAACAAGAGAAGTTTGCATCTCTAAATCTATTCCAACCTGGTAACATAGGTCTGAGGACGCTTGATCGTTGTATACGGTTTTCTTGTGGTGGTTTCAGAAATACTAAAGAAATAATGAAATACTGAAAGTTTTGAACCAACGGTCACAAAGCAGTTATTTGTTATTCTAGACAAGTAGACGATTATCAATAGCAGCATAATAGTCAGCGTAATGAAAAGGACGAAAAACTATATTTCTAGAAGCAAAAACTATAACCCAAAAGTTCAACCTATTAAGTAAACGTCTTGTAGTTGTGAAGGGAATTTGTGTTGTAGAGAAGAATGCTTTCCTGGAGATAAAATTTTTGGATGAACATATTGAAAACTTTAAAAAAATGAATATAAACCTCGCAAAAGTGAGCCTTGCGGTGCTGAATGGTTTTCTGGTTGTCGATAGAATGGTCTTCCTAAATTTTCAGAAATACGTTTTAGGAAAGTATTGATCTTCAAAGAAATTTATTTTGACTAACCGCAAAGAAAAATAACTTGTTAGAAGCGGAGAAGAGTCATAGCAAATACTGAAAATATTAACAACAGAGACACTAGTCGATGTGAACAAAAATTATGACGCTAGTGTTTTAAAATACCAAAAACCTTGTGACTGATTTCCATGAATCTTGATTCCATGTGGAAAACTTCCTAAACCTGATTTTATTACCCATACAAAAGTTCTTATCCTAACCTTGTTGTA</canonical>
            <polymorphic>CGGCTTGTCGTAGACAAATGTGGTTGTTGTTTTCTACTGGAATTTTTCAAAGTCTACCGATTTCAAATAATCGAACCTAGTATAATACGGAGTTGTAGGCGTAATTTCGGGTTTCCTAGTGGTAGACAGTAATATTTTCCTGAAACTTGATTCGAATCTTTACTTTCTAGAATACAAAGTCACCTAACAGAGGTACCGACATGCTTTGAAGTAGGGAGTGGCCTTTTCGTTGTTGTGGTGAATGGTGTTCTAAAATTTTGTGAACGGGAATAACAAGAGAAGTTTGCATCTCTAAATCTATTCCAACCTGGTAACATAGGTCTGAGGACGCTTGATCGTTGTATACGGTTTTCTTGTGGTGGTTTCAGAAATACTAAAGAAATAATGAAATACTGAAAGTTTTGAACCAACGGTCACAAAGCAGTTATTTGTTATTCTAGACAAGTAGACGATTATCAATAGCAGCATAATAGTCAGCGTAATGAAAAGGACGAAAAACWATATTTCTAGAAGCAAAAACTATAACCCAAAAGTTCAACCTATTAAGTAAACGTCTTGTAGTTGTGAAGGGAATTTGTGTTGTAGAGAAGAATGCTTTCCTGGAGATAAAATTTTTGGATGAACATATTGAAAACTTTAAAAAAATGAATATAAACCTCGCAAAAGTGAGCCTTGCGGTGCTGAATGGTTTTCTGGTTGTCGATAGAATGGTCTTCCTAAATTTTCAGAAATACGTTTTAGGAAAGTATTGATCTTCAAAGAAATTTATTTTGACTAACCGCAAAGAAAAATAACTTGTTAGAAGCGGAGAAGAGTCATAGCAAATACTGAAAATATTAACAACAGAGACACTAGTCGATGTGAACAAAAATTATGACGCTAGTGTTTTAAAATACCAAAAACCTTGTGACTGATTTCCATGAATCTTGATTCCATGTGGAAAACTTCCTAAACCTGATTTTATTACCCATACAAAAGTTCTTATCCTAACCTTGTTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTGGTTTCAGAAATACTAAAG</pcr_primer_p1>
		<pcr_primer_p2>GAAAGCATTCTTCTCTACAACAC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TGGTGGTTTCAGAAATACTAAAGAAATAATGAAATACTGAAAGTTTTGAACCAACGGTCACAAAGCAGTTATTTGTTATTCTAGACAAGTAGACGATTATCAATAGCAGCATAATAGTCAGCGTAATGAAAAGGACGAAAAACTATATTTCTAGAAGCAAAAACTATAACCCAAAAGTTCAACCTATTAAGTAAACGTCTTGTAGTTGTGAAGGGAATTTGTGTTGTAGAGAAGAATGCTTTC</canonical_amplicon>
		<polymorphic_amplicon>TGGTGGTTTCAGAAATACTAAAGAAATAATGAAATACTGAAAGTTTTGAACCAACGGTCACAAAGCAGTTATTTGTTATTCTAGACAAGTAGACGATTATCAATAGCAGCATAATAGTCAGCGTAATGAAAAGGACGAAAAACWATATTTCTAGAAGCAAAAACTATAACCCAAAAGTTCAACCTATTAAGTAAACGTCTTGTAGTTGTGAAGGGAATTTGTGTTGTAGAGAAGAATGCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3013</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>60578</contig_pos>
        <strand>+</strand>
        <context>AAGGAGTACA[A/G]AAGAAGTAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGCTTAAAAATTGGATTGCAAGGAAAGAAGAAAAAGAAGAAGGAGTACA</left_flank>
        <right_flank>AAGAAGTAAGGACAAGATTTATTAAATCAAATCAAAAGGGCTAAGAATAG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAATCGGATGAGAATGAAATGAGCCATCGTAGAAAACAACTGGGTAAGATGGTCGCGCAGACTCACACGCTGCCTGCTCTTCGTATAGAAGCTCTATACATACTTCAACATTCATTTATGAACATTTTTATGACCGAACTTCTTCTTCTTCTCCTTTTTTTTCATCTGAAGAGCACAATCCTTTTCCTGAATCGGCTTCCTCTTTCCTCAATGTATTCCACCACAAGAAAAAACTAAGAAGGACGAGCAGGAGGATGAAAAACGAAAGACAGAATAGAAGGCGTATCGAGTTGTATGTGCTTCGAAACAAATTGGGTTTCTTCTCTCCTGCACCGCTGACTTGCCTTTTTTCTGTCTTTTTTTGGCTTCGTTCTTTATTTCTTTCTTCAAACACCAAAAATTTATGGGCACCGTTGGAGTATAGTAGTGGACATTCGAAATTGCTACTTGCTTAAAAATTGGATTGCAAGGAAAGAAGAAAAAGAAGAAGGAGTACAAAAGAAGTAAGGACAAGATTTATTAAATCAAATCAAAAGGGCTAAGAATAGAAGGGTTATGAGTGATGTGTATGGAAAAGAAAGAGTAAGAAGAAATAGAAAATTAATGACAACAGGTCAAAAATGATGTGAAGCGGAATCGATTTGGGTGGCTCGAAAACGACGATATATAGAAGAAGAAGAAGATGAAGACCGACACGAAGCAACCCAAGAAGAGGAGAGTCTCTCTCCTTTTTCTCTCTCAAATTCTCTACCTGATTGTATGCTATTTCAAAAAAAGGGACTGAGTTGTGTGTTGAAAAAAGCTTGTGCAAAGTAGTATTGGGTGGAAAGTAGGTGAGTTAAGAGACTGAGAAGAAGAAGGAGAAGAAGATGAAAAGAAATAAGGAAAGACGAATATCGTTTTCATTCTAAAATTGGAAAACTGGGATGAAGCTTTTTTGGTTCATCCTCACTTCAACCTCGGCCGAACAAAGATCCTTTCTGTTGGTCAAGCGTCGG</canonical>
            <polymorphic>GAAAATCGGATGAGAATGAAATGAGCCATCGTAGAAAACAACTGGGTAAGATGGTCGCGCAGACTCACACGCTGCCTGCTCTTCGTATAGAAGCTCTATACATACTTCAACATTCATTTATGAACATTTTTATGACCGAACTTCTTCTTCTTCTCCTTTTTTTTCATCTGAAGAGCACAATCCTTTTCCTGAATCGGCTTCCTCTTTCCTCAATGTATTCCACCACAAGAAAAAACTAAGAAGGACGAGCAGGAGGATGAAAAACGAAAGACAGAATAGAAGGCGTATCGAGTTGTATGTGCTTCGAAACAAATTGGGTTTCTTCTCTCCTGCACCGCTGACTTGCCTTTTTTCTGTCTTTTTTTGGCTTCGTTCTTTATTTCTTTCTTCAAACACCAAAAATTTATGGGCACCGTTGGAGTATAGTAGTGGACATTCGAAATTGCTACTTGCTTAAAAATTGGATTGCAAGGAAAGAAGAAAAAGAAGAAGGAGTACARAAGAAGTAAGGACAAGATTTATTAAATCAAATCAAAAGGGCTAAGAATAGAAGGGTTATGAGTGATGTGTATGGAAAAGAAAGAGTAAGAAGAAATAGAAAATTAATGACAACAGGTCAAAAATGATGTGAAGCGGAATCGATTTGGGTGGCTCGAAAACGACGATATATAGAAGAAGAAGAAGATGAAGACCGACACGAAGCAACCCAAGAAGAGGAGAGTCTCTCTCCTTTTTCTCTCTCAAATTCTCTACCTGATTGTATGCTATTTCAAAAAAAGGGACTGAGTTGTGTGTTGAAAAAAGCTTGTGCAAAGTAGTATTGGGTGGAAAGTAGGTGAGTTAAGAGACTGAGAAGAAGAAGGAGAAGAAGATGAAAAGAAATAAGGAAAGACGAATATCGTTTTCATTCTAAAATTGGAAAACTGGGATGAAGCTTTTTTGGTTCATCCTCACTTCAACCTCGGCCGAACAAAGATCCTTTCTGTTGGTCAAGCGTCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTACTTGCTTAAAAATTGGATTG</pcr_primer_p1>
		<pcr_primer_p2>GGTCTTCATCTTCTTCTTCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTACTTGCTTAAAAATTGGATTGCAAGGAAAGAAGAAAAAGAAGAAGGAGTACAAAAGAAGTAAGGACAAGATTTATTAAATCAAATCAAAAGGGCTAAGAATAGAAGGGTTATGAGTGATGTGTATGGAAAAGAAAGAGTAAGAAGAAATAGAAAATTAATGACAACAGGTCAAAAATGATGTGAAGCGGAATCGATTTGGGTGGCTCGAAAACGACGATATATAGAAGAAGAAGAAGATGAAGACC</canonical_amplicon>
		<polymorphic_amplicon>CTACTTGCTTAAAAATTGGATTGCAAGGAAAGAAGAAAAAGAAGAAGGAGTACARAAGAAGTAAGGACAAGATTTATTAAATCAAATCAAAAGGGCTAAGAATAGAAGGGTTATGAGTGATGTGTATGGAAAAGAAAGAGTAAGAAGAAATAGAAAATTAATGACAACAGGTCAAAAATGATGTGAAGCGGAATCGATTTGGGTGGCTCGAAAACGACGATATATAGAAGAAGAAGAAGATGAAGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3014</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>62492</contig_pos>
        <strand>+</strand>
        <context>ATATTTAGGA[A/G]GATCTTCTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCTCAGCACTTTGGCACTTTTGCATTAATATTAATACACATATTTAGGA</left_flank>
        <right_flank>GATCTTCTTTCTCTTGTTTAAAAATTTTGTTTCACTTTTAAAAAAGAGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATTCATCATGAAGCCGTCGTCGGGGTTAAGAAGACTAGAGAGTGGAATAGATGAGGAAAATGTCTGTGAGAAGAAGAAGAGGAAAGTATACTCTCTTTTTAAGGAAATCGGGGGATTTGTGTATTGGGGATGGATGCAGTAGAAAAAAGAGGATGACATTGGATGTGAAATGAAATACGATTCTTCTCTCCTTTTTGAGATATCTATTTTGGCTTCGGAAGGCCGGAAGCTGTCGAAAGACTCATTGTTGCATGAGTATATACCACTAGAAATCTATGATACAAGTGTTGAAGAAGGCTACTAAAGCAACCGAGAATACGTGCACATCTTCTCCTGACTGACCACTTTCCTCGTGAATAATTGAGAAGACGTCGTTGAGAAGAAGAAAAAGAAGAGGAAGAGTCGGGACCTCCTCCTCCTCTTCTTCTTCTCCTTCTTTTTCAACAAACCTCAGCACTTTGGCACTTTTGCATTAATATTAATACACATATTTAGGAAGATCTTCTTTCTCTTGTTTAAAAATTTTGTTTCACTTTTAAAAAAGAGTTTCGAGAAGAATGAAGTGAGAAAAAAGGAGAAGGAGAAAGATCTAGAAAAGAGGAGCAGGATTAGTAGAGAATGACTGTGAATGAGGAGAAGAAGGAGAATGTGACGGAAGTTTTTGGAACGGCGAGGAGAAGAAAAATGTGAGTGAGATTACTTTTTAGGAAAAGAGTCGCTTCTCTTTTCCTAAAGATTTTGCATTTTTATATTTATCTTAAGAAACCATCGATCACATACTGAATGACCCTAATACAGGCAATCAGATATCTATAGAAAAAGAAGACTAATTTAAAAATTGGTTTTTCAAATGTTGTCGGACAGAGATTATTTTTGTCTAATTTCATTGCGCGCCGAAAGTTCGTGAGTGGGCGGAGCTTCGGTGCTGTAGCAAAATCCTTAAAAGTTTTTTTGTTGTTTTAAAAAAGTTCTAAATTGATTGACTTTTTCAAAAAATA</canonical>
            <polymorphic>CAATTCATCATGAAGCCGTCGTCGGGGTTAAGAAGACTAGAGAGTGGAATAGATGAGGAAAATGTCTGTGAGAAGAAGAAGAGGAAAGTATACTCTCTTTTTAAGGAAATCGGGGGATTTGTGTATTGGGGATGGATGCAGTAGAAAAAAGAGGATGACATTGGATGTGAAATGAAATACGATTCTTCTCTCCTTTTTGAGATATCTATTTTGGCTTCGGAAGGCCGGAAGCTGTCGAAAGACTCATTGTTGCATGAGTATATACCACTAGAAATCTATGATACAAGTGTTGAAGAAGGCTACTAAAGCAACCGAGAATACGTGCACATCTTCTCCTGACTGACCACTTTCCTCGTGAATAATTGAGAAGACGTCGTTGAGAAGAAGAAAAAGAAGAGGAAGAGTCGGGACCTCCTCCTCCTCTTCTTCTTCTCCTTCTTTTTCAACAAACCTCAGCACTTTGGCACTTTTGCATTAATATTAATACACATATTTAGGARGATCTTCTTTCTCTTGTTTAAAAATTTTGTTTCACTTTTAAAAAAGAGTTTCGAGAAGAATGAAGTGAGAAAAAAGGAGAAGGAGAAAGATCTAGAAAAGAGGAGCAGGATTAGTAGAGAATGACTGTGAATGAGGAGAAGAAGGAGAATGTGACGGAAGTTTTTGGAACGGCGAGGAGAAGAAAAATGTGAGTGAGATTACTTTTTAGGAAAAGAGTCGCTTCTCTTTTCCTAAAGATTTTGCATTTTTATATTTATCTTAAGAAACCATCGATCACATACTGAATGACCCTAATACAGGCAATCAGATATCTATAGAAAAAGAAGACTAATTTAAAAATTGGTTTTTCAAATGTTGTCGGACAGAGATTATTTTTGTCTAATTTCATTGCGCGCCGAAAGTTCGTGAGTGGGCGGAGCTTCGGTGCTGTAGCAAAATCCTTAAAAGTTTTTTTGTTGTTTTAAAAAAGTTCTAAATTGATTGACTTTTTCAAAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>500 412 88</canonical_bands>
                <polymorphic_bands>588 412</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>500 412 88</canonical_bands>
                <polymorphic_bands>588 412</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGAGAAGACGTCGTTGAG</pcr_primer_p1>
		<pcr_primer_p2>CACTCACATTTTTCTTCTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>334</pcr_amplicon_size>
		<canonical_amplicon>ATTGAGAAGACGTCGTTGAGAAGAAGAAAAAGAAGAGGAAGAGTCGGGACCTCCTCCTCCTCTTCTTCTTCTCCTTCTTTTTCAACAAACCTCAGCACTTTGGCACTTTTGCATTAATATTAATACACATATTTAGGAAGATCTTCTTTCTCTTGTTTAAAAATTTTGTTTCACTTTTAAAAAAGAGTTTCGAGAAGAATGAAGTGAGAAAAAAGGAGAAGGAGAAAGATCTAGAAAAGAGGAGCAGGATTAGTAGAGAATGACTGTGAATGAGGAGAAGAAGGAGAATGTGACGGAAGTTTTTGGAACGGCGAGGAGAAGAAAAATGTGAGTG</canonical_amplicon>
		<polymorphic_amplicon>ATTGAGAAGACGTCGTTGAGAAGAAGAAAAAGAAGAGGAAGAGTCGGGACCTCCTCCTCCTCTTCTTCTTCTCCTTCTTTTTCAACAAACCTCAGCACTTTGGCACTTTTGCATTAATATTAATACACATATTTAGGARGATCTTCTTTCTCTTGTTTAAAAATTTTGTTTCACTTTTAAAAAAGAGTTTCGAGAAGAATGAAGTGAGAAAAAAGGAGAAGGAGAAAGATCTAGAAAAGAGGAGCAGGATTAGTAGAGAATGACTGTGAATGAGGAGAAGAAGGAGAATGTGACGGAAGTTTTTGGAACGGCGAGGAGAAGAAAAATGTGAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3047</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>62689</contig_pos>
        <strand>+</strand>
        <context>ATGTGAGTGA[A/G]ATTACTTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATGTGACGGAAGTTTTTGGAACGGCGAGGAGAAGAAAAATGTGAGTGA</left_flank>
        <right_flank>ATTACTTTTTAGGAAAAGAGTCGCTTCTCTTTTCCTAAAGATTTTGCATT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGATATCTATTTTGGCTTCGGAAGGCCGGAAGCTGTCGAAAGACTCATTGTTGCATGAGTATATACCACTAGAAATCTATGATACAAGTGTTGAAGAAGGCTACTAAAGCAACCGAGAATACGTGCACATCTTCTCCTGACTGACCACTTTCCTCGTGAATAATTGAGAAGACGTCGTTGAGAAGAAGAAAAAGAAGAGGAAGAGTCGGGACCTCCTCCTCCTCTTCTTCTTCTCCTTCTTTTTCAACAAACCTCAGCACTTTGGCACTTTTGCATTAATATTAATACACATATTTAGGAAGATCTTCTTTCTCTTGTTTAAAAATTTTGTTTCACTTTTAAAAAAGAGTTTCGAGAAGAATGAAGTGAGAAAAAAGGAGAAGGAGAAAGATCTAGAAAAGAGGAGCAGGATTAGTAGAGAATGACTGTGAATGAGGAGAAGAAGGAGAATGTGACGGAAGTTTTTGGAACGGCGAGGAGAAGAAAAATGTGAGTGAGATTACTTTTTAGGAAAAGAGTCGCTTCTCTTTTCCTAAAGATTTTGCATTTTTATATTTATCTTAAGAAACCATCGATCACATACTGAATGACCCTAATACAGGCAATCAGATATCTATAGAAAAAGAAGACTAATTTAAAAATTGGTTTTTCAAATGTTGTCGGACAGAGATTATTTTTGTCTAATTTCATTGCGCGCCGAAAGTTCGTGAGTGGGCGGAGCTTCGGTGCTGTAGCAAAATCCTTAAAAGTTTTTTTGTTGTTTTAAAAAAGTTCTAAATTGATTGACTTTTTCAAAAAATAAAAATAAGGCCAGAAAACAATTACGAAAATACATTCTCCTTTAAATGCGCCTTTAAGGATCTCGCTACCTGACTTAAGCTCCGCCCATCCTCGAATTTTCGGCTGCAACGCGTATTGAAATTAGACAAGAGTAATATTAAAATCTACGAAAATTGTTTTCTGAAAACACTAACACACAAAACGAATTCATGTTCATC</canonical>
            <polymorphic>TGAGATATCTATTTTGGCTTCGGAAGGCCGGAAGCTGTCGAAAGACTCATTGTTGCATGAGTATATACCACTAGAAATCTATGATACAAGTGTTGAAGAAGGCTACTAAAGCAACCGAGAATACGTGCACATCTTCTCCTGACTGACCACTTTCCTCGTGAATAATTGAGAAGACGTCGTTGAGAAGAAGAAAAAGAAGAGGAAGAGTCGGGACCTCCTCCTCCTCTTCTTCTTCTCCTTCTTTTTCAACAAACCTCAGCACTTTGGCACTTTTGCATTAATATTAATACACATATTTAGGAAGATCTTCTTTCTCTTGTTTAAAAATTTTGTTTCACTTTTAAAAAAGAGTTTCGAGAAGAATGAAGTGAGAAAAAAGGAGAAGGAGAAAGATCTAGAAAAGAGGAGCAGGATTAGTAGAGAATGACTGTGAATGAGGAGAAGAAGGAGAATGTGACGGAAGTTTTTGGAACGGCGAGGAGAAGAAAAATGTGAGTGARATTACTTTTTAGGAAAAGAGTCGCTTCTCTTTTCCTAAAGATTTTGCATTTTTATATTTATCTTAAGAAACCATCGATCACATACTGAATGACCCTAATACAGGCAATCAGATATCTATAGAAAAAGAAGACTAATTTAAAAATTGGTTTTTCAAATGTTGTCGGACAGAGATTATTTTTGTCTAATTTCATTGCGCGCCGAAAGTTCGTGAGTGGGCGGAGCTTCGGTGCTGTAGCAAAATCCTTAAAAGTTTTTTTGTTGTTTTAAAAAAGTTCTAAATTGATTGACTTTTTCAAAAAATAAAAATAAGGCCAGAAAACAATTACGAAAATACATTCTCCTTTAAATGCGCCTTTAAGGATCTCGCTACCTGACTTAAGCTCCGCCCATCCTCGAATTTTCGGCTGCAACGCGTATTGAAATTAGACAAGAGTAATATTAAAATCTACGAAAATTGTTTTCTGAAAACACTAACACACAAAACGAATTCATGTTCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGTTTAAAAATTTTGTTTCACTT</pcr_primer_p1>
		<pcr_primer_p2>AGTATGTGATCGATGGTTTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>CTTGTTTAAAAATTTTGTTTCACTTTTAAAAAAGAGTTTCGAGAAGAATGAAGTGAGAAAAAAGGAGAAGGAGAAAGATCTAGAAAAGAGGAGCAGGATTAGTAGAGAATGACTGTGAATGAGGAGAAGAAGGAGAATGTGACGGAAGTTTTTGGAACGGCGAGGAGAAGAAAAATGTGAGTGAGATTACTTTTTAGGAAAAGAGTCGCTTCTCTTTTCCTAAAGATTTTGCATTTTTATATTTATCTTAAGAAACCATCGATCACATACT</canonical_amplicon>
		<polymorphic_amplicon>CTTGTTTAAAAATTTTGTTTCACTTTTAAAAAAGAGTTTCGAGAAGAATGAAGTGAGAAAAAAGGAGAAGGAGAAAGATCTAGAAAAGAGGAGCAGGATTAGTAGAGAATGACTGTGAATGAGGAGAAGAAGGAGAATGTGACGGAAGTTTTTGGAACGGCGAGGAGAAGAAAAATGTGAGTGARATTACTTTTTAGGAAAAGAGTCGCTTCTCTTTTCCTAAAGATTTTGCATTTTTATATTTATCTTAAGAAACCATCGATCACATACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3048</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>68663</contig_pos>
        <strand>+</strand>
        <context>CATGTGCATA[C/T]TCTGGAACAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACGAGTATATCGACGGAGTGGAGAGCTCATCACGGGAAGCATGTGCATA</left_flank>
        <right_flank>TCTGGAACATATTTTAATGCTATTGAAGAATTTGAATCCAGAGCTTACTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTCGTCTTCGTTGGTGCGTGTGCCCACGGATTCCAGAAGCTGTGGAGATGTGACACCTGAATAACAACCAAGTGTTATTTGGTTCCCCTTCTATGACAGGATATCACAACAAAGTTACAGGAAGATGTGAATACATTAGAAGAACACACTTCTATAGTTCCAAAAGGTCAGTGATTATGAGATGTGTAAAGAATCAATACACACAAGTGAAATGAAGGTAACAATTAATACATATTCATATCCATCAAAATAACTAATAAGAATCAGTGAGAAATGGGAAAGTGGGACTCGGTTTTAACTCTTACTCTTCAACGATTTCATTATCTCGTTCAACTTGGACAAGTCTTAAAACAAGAAGTGCTGAAAGTTGAGGCCAAAGATCTCTATTGCTTTACATACCTTGTGGATATTGGCGATACATCAGATTGCGCACGTTGACTGCCAAATGACGAGTATATCGACGGAGTGGAGAGCTCATCACGGGAAGCATGTGCATATTCTGGAACATATTTTAATGCTATTGAAGAATTTGAATCCAGAGCTTACTGGTGGTAGTCCTCCAATAAAGACATCAGAGTTTTTCAGAATATTCCCGAAGACAAAACTTCTTTGGTTCAAGATCTTGAAAACCAAAGTGTAGTCCAACTCCAATTTTACATTCTCCCATGATTGAAATATCGTTAGAGTATGCCATTTGTCATCATCTATTCTGACCTGAAATTCCATTTTCTTTGTTTCATAGTTCTATTTTTATAATATTGCAACAATACTTCCTTCTTTTACTGACACTTGTTCTTTTGACTTAATCCCAGTGGGACGTGCTCTCGGAGCTCACTTAAAGTATAAAATATATGGGTTTCAATGCGGATGGCGGCATTGTGGATCGACTGCTCAAAGAACACCGCTTCTCGCGGAGATAACTTGATTCGCAGATTTATGACCGTTGGGTATAGAGAAACGGAATAAGAAGAAAAAGTCAAAATATATAGAAGAAAGAA</canonical>
            <polymorphic>TGGTCGTCTTCGTTGGTGCGTGTGCCCACGGATTCCAGAAGCTGTGGAGATGTGACACCTGAATAACAACCAAGTGTTATTTGGTTCCCCTTCTATGACAGGATATCACAACAAAGTTACAGGAAGATGTGAATACATTAGAAGAACACACTTCTATAGTTCCAAAAGGTCAGTGATTATGAGATGTGTAAAGAATCAATACACACAAGTGAAATGAAGGTAACAATTAATACATATTCATATCCATCAAAATAACTAATAAGAATCAGTGAGAAATGGGAAAGTGGGACTCGGTTTTAACTCTTACTCTTCAACGATTTCATTATCTCGTTCAACTTGGACAAGTCTTAAAACAAGAAGTGCTGAAAGTTGAGGCCAAAGATCTCTATTGCTTTACATACCTTGTGGATATTGGCGATACATCAGATTGCGCACGTTGACTGCCAAATGACGAGTATATCGACGGAGTGGAGAGCTCATCACGGGAAGCATGTGCATAYTCTGGAACATATTTTAATGCTATTGAAGAATTTGAATCCAGAGCTTACTGGTGGTAGTCCTCCAATAAAGACATCAGAGTTTTTCAGAATATTCCCGAAGACAAAACTTCTTTGGTTCAAGATCTTGAAAACCAAAGTGTAGTCCAACTCCAATTTTACATTCTCCCATGATTGAAATATCGTTAGAGTATGCCATTTGTCATCATCTATTCTGACCTGAAATTCCATTTTCTTTGTTTCATAGTTCTATTTTTATAATATTGCAACAATACTTCCTTCTTTTACTGACACTTGTTCTTTTGACTTAATCCCAGTGGGACGTGCTCTCGGAGCTCACTTAAAGTATAAAATATATGGGTTTCAATGCGGATGGCGGCATTGTGGATCGACTGCTCAAAGAACACCGCTTCTCGCGGAGATAACTTGATTCGCAGATTTATGACCGTTGGGTATAGAGAAACGGAATAAGAAGAAAAAGTCAAAATATATAGAAGAAAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAAGATCTCTATTGCTTTACA</pcr_primer_p1>
		<pcr_primer_p2>AAGATCTTGAACCAAAGAAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCAAAGATCTCTATTGCTTTACATACCTTGTGGATATTGGCGATACATCAGATTGCGCACGTTGACTGCCAAATGACGAGTATATCGACGGAGTGGAGAGCTCATCACGGGAAGCATGTGCATATTCTGGAACATATTTTAATGCTATTGAAGAATTTGAATCCAGAGCTTACTGGTGGTAGTCCTCCAATAAAGACATCAGAGTTTTTCAGAATATTCCCGAAGACAAAACTTCTTTGGTTCAAGATCTT</canonical_amplicon>
		<polymorphic_amplicon>CCAAAGATCTCTATTGCTTTACATACCTTGTGGATATTGGCGATACATCAGATTGCGCACGTTGACTGCCAAATGACGAGTATATCGACGGAGTGGAGAGCTCATCACGGGAAGCATGTGCATAYTCTGGAACATATTTTAATGCTATTGAAGAATTTGAATCCAGAGCTTACTGGTGGTAGTCCTCCAATAAAGACATCAGAGTTTTTCAGAATATTCCCGAAGACAAAACTTCTTTGGTTCAAGATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3049</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>150816</contig_pos>
        <strand>+</strand>
        <context>TCTCTTGGCA[A/C]TGAGCCAGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGCGGGATGATACGAAACTCGGATATATTCTTTCATATCATCTCTTGGCA</left_flank>
        <right_flank>TGAGCCAGGAGGTTTCTGGGCCAGATTGAAGAATGTTGAGTTGACACATG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGTTTTGTTTATATTTTTCGAAATAGCAATGGCCCTGGGAACCTGGCACCCACGCTGTCCGATTAATTATCCCATCCGTGTTAGCTACCGCGCCCCGTCCCTCCCGGTATCTATACTACTAACCATGCAGAATTGAAATTCGTAGTAGTAGTAGTAGTATAGATAAGATCCGAGGTCACCCACTCGTTCTCGCTTTATAGTTTTTTTTTTCGGACCCATCGAGGAACCTGGCTGATCTACGATGTCCTCAAGTGTATATCTTCGCTGATCAGTGATTATCTAGTGCAAGCCATTGGAAAAGCTGACACCTCAGACTCAGTCCCAATCAAATCACCTCGTATCCCTTCGTTTCTTTTCCCCTTGTTGTCCTGTCAGAATTTAGTTCCGCTCATTAATCATCATCATGTTCTTTTCACCACTTCCACTATCACCGGAAAATAAAGTAGAAGCGGGATGATACGAAACTCGGATATATTCTTTCATATCATCTCTTGGCAATGAGCCAGGAGGTTTCTGGGCCAGATTGAAGAATGTTGAGTTGACACATGGTGATTGATAAGAAACAAAAGACATGCGGGATTGATGTTTGTTTGTACAAGTGGTTAATTATGTTTGAATTAGTAAACCTAGCCGCGCGAACTGTGTGATTTCTGATGTTGAATGTGTGCTAGGACCAGCCGACTCGTATACAGATACAAGACCAAGATTTTAAAAAAACAGTAGGTCAAATTGGAACATTCAAAACTTAATTCAGATTTTCTACTTCAAAGATTACGGTTGTTTGCTAACCTCACATTGGAGAAGGTTCTTAACCATCTTCTGCTATCACTGATCTGTTCTGCTCTTCTTGAGACCAAAGTTTCTTTCGTATTTCACGAACTTTTCCTCCAATTGTTGCGTTATACCGGCTGCGTTCTGCCTGGCGCCAAATTGTCGTCACGATTCAAGACGTTCATGTGGAAGTATGGTGGGGCTCCTCGCGTCAATTGGAGCTGGCA</canonical>
            <polymorphic>ACTGTTTTGTTTATATTTTTCGAAATAGCAATGGCCCTGGGAACCTGGCACCCACGCTGTCCGATTAATTATCCCATCCGTGTTAGCTACCGCGCCCCGTCCCTCCCGGTATCTATACTACTAACCATGCAGAATTGAAATTCGTAGTAGTAGTAGTAGTATAGATAAGATCCGAGGTCACCCACTCGTTCTCGCTTTATAGTTTTTTTTTTCGGACCCATCGAGGAACCTGGCTGATCTACGATGTCCTCAAGTGTATATCTTCGCTGATCAGTGATTATCTAGTGCAAGCCATTGGAAAAGCTGACACCTCAGACTCAGTCCCAATCAAATCACCTCGTATCCCTTCGTTTCTTTTCCCCTTGTTGTCCTGTCAGAATTTAGTTCCGCTCATTAATCATCATCATGTTCTTTTCACCACTTCCACTATCACCGGAAAATAAAGTAGAAGCGGGATGATACGAAACTCGGATATATTCTTTCATATCATCTCTTGGCAMTGAGCCAGGAGGTTTCTGGGCCAGATTGAAGAATGTTGAGTTGACACATGGTGATTGATAAGAAACAAAAGACATGCGGGATTGATGTTTGTTTGTACAAGTGGTTAATTATGTTTGAATTAGTAAACCTAGCCGCGCGAACTGTGTGATTTCTGATGTTGAATGTGTGCTAGGACCAGCCGACTCGTATACAGATACAAGACCAAGATTTTAAAAAAACAGTAGGTCAAATTGGAACATTCAAAACTTAATTCAGATTTTCTACTTCAAAGATTACGGTTGTTTGCTAACCTCACATTGGAGAAGGTTCTTAACCATCTTCTGCTATCACTGATCTGTTCTGCTCTTCTTGAGACCAAAGTTTCTTTCGTATTTCACGAACTTTTCCTCCAATTGTTGCGTTATACCGGCTGCGTTCTGCCTGGCGCCAAATTGTCGTCACGATTCAAGACGTTCATGTGGAAGTATGGTGGGGCTCCTCGCGTCAATTGGAGCTGGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGTTGTCCTGTCAGAATTTAG</pcr_primer_p1>
		<pcr_primer_p2>TTAACCACTTGTACAAACAAACA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTTGTTGTCCTGTCAGAATTTAGTTCCGCTCATTAATCATCATCATGTTCTTTTCACCACTTCCACTATCACCGGAAAATAAAGTAGAAGCGGGATGATACGAAACTCGGATATATTCTTTCATATCATCTCTTGGCAATGAGCCAGGAGGTTTCTGGGCCAGATTGAAGAATGTTGAGTTGACACATGGTGATTGATAAGAAACAAAAGACATGCGGGATTGATGTTTGTTTGTACAAGTGGTTAA</canonical_amplicon>
		<polymorphic_amplicon>CTTGTTGTCCTGTCAGAATTTAGTTCCGCTCATTAATCATCATCATGTTCTTTTCACCACTTCCACTATCACCGGAAAATAAAGTAGAAGCGGGATGATACGAAACTCGGATATATTCTTTCATATCATCTCTTGGCAMTGAGCCAGGAGGTTTCTGGGCCAGATTGAAGAATGTTGAGTTGACACATGGTGATTGATAAGAAACAAAAGACATGCGGGATTGATGTTTGTTTGTACAAGTGGTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3050</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>151084</contig_pos>
        <strand>+</strand>
        <context>TTTTCTACTT[C/T]AAAGATTACG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACAGTAGGTCAAATTGGAACATTCAAAACTTAATTCAGATTTTCTACTT</left_flank>
        <right_flank>AAAGATTACGGTTGTTTGCTAACCTCACATTGGAGAAGGTTCTTAACCAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCAGTGATTATCTAGTGCAAGCCATTGGAAAAGCTGACACCTCAGACTCAGTCCCAATCAAATCACCTCGTATCCCTTCGTTTCTTTTCCCCTTGTTGTCCTGTCAGAATTTAGTTCCGCTCATTAATCATCATCATGTTCTTTTCACCACTTCCACTATCACCGGAAAATAAAGTAGAAGCGGGATGATACGAAACTCGGATATATTCTTTCATATCATCTCTTGGCAATGAGCCAGGAGGTTTCTGGGCCAGATTGAAGAATGTTGAGTTGACACATGGTGATTGATAAGAAACAAAAGACATGCGGGATTGATGTTTGTTTGTACAAGTGGTTAATTATGTTTGAATTAGTAAACCTAGCCGCGCGAACTGTGTGATTTCTGATGTTGAATGTGTGCTAGGACCAGCCGACTCGTATACAGATACAAGACCAAGATTTTAAAAAAACAGTAGGTCAAATTGGAACATTCAAAACTTAATTCAGATTTTCTACTTCAAAGATTACGGTTGTTTGCTAACCTCACATTGGAGAAGGTTCTTAACCATCTTCTGCTATCACTGATCTGTTCTGCTCTTCTTGAGACCAAAGTTTCTTTCGTATTTCACGAACTTTTCCTCCAATTGTTGCGTTATACCGGCTGCGTTCTGCCTGGCGCCAAATTGTCGTCACGATTCAAGACGTTCATGTGGAAGTATGGTGGGGCTCCTCGCGTCAATTGGAGCTGGCACTGCGCTCCTCCGAATTTAGATCGCGGAAAAAAACCGAGGAGCGCATGGTGTGTATTTGCGCCTCGCGCCGCGCACCTGATTTTGCAAAAAATGATTGCAACTCTTTCTTCAGTTCAGTTCCATTTTCGGACTTCTCAGTTTTTCTATTCTCCCACGCACGCGCACCACAAGCTCGACTAATGATTGTCGGACGTCATACACTCCTTCCGACGACTGCGCACACATACAAACAAACAGAAATACAGTATGGAACTCCTTGTTTGCATT</canonical>
            <polymorphic>GATCAGTGATTATCTAGTGCAAGCCATTGGAAAAGCTGACACCTCAGACTCAGTCCCAATCAAATCACCTCGTATCCCTTCGTTTCTTTTCCCCTTGTTGTCCTGTCAGAATTTAGTTCCGCTCATTAATCATCATCATGTTCTTTTCACCACTTCCACTATCACCGGAAAATAAAGTAGAAGCGGGATGATACGAAACTCGGATATATTCTTTCATATCATCTCTTGGCAATGAGCCAGGAGGTTTCTGGGCCAGATTGAAGAATGTTGAGTTGACACATGGTGATTGATAAGAAACAAAAGACATGCGGGATTGATGTTTGTTTGTACAAGTGGTTAATTATGTTTGAATTAGTAAACCTAGCCGCGCGAACTGTGTGATTTCTGATGTTGAATGTGTGCTAGGACCAGCCGACTCGTATACAGATACAAGACCAAGATTTTAAAAAAACAGTAGGTCAAATTGGAACATTCAAAACTTAATTCAGATTTTCTACTTYAAAGATTACGGTTGTTTGCTAACCTCACATTGGAGAAGGTTCTTAACCATCTTCTGCTATCACTGATCTGTTCTGCTCTTCTTGAGACCAAAGTTTCTTTCGTATTTCACGAACTTTTCCTCCAATTGTTGCGTTATACCGGCTGCGTTCTGCCTGGCGCCAAATTGTCGTCACGATTCAAGACGTTCATGTGGAAGTATGGTGGGGCTCCTCGCGTCAATTGGAGCTGGCACTGCGCTCCTCCGAATTTAGATCGCGGAAAAAAACCGAGGAGCGCATGGTGTGTATTTGCGCCTCGCGCCGCGCACCTGATTTTGCAAAAAATGATTGCAACTCTTTCTTCAGTTCAGTTCCATTTTCGGACTTCTCAGTTTTTCTATTCTCCCACGCACGCGCACCACAAGCTCGACTAATGATTGTCGGACGTCATACACTCCTTCCGACGACTGCGCACACATACAAACAAACAGAAATACAGTATGGAACTCCTTGTTTGCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGATGTTTGTTTGTACAAGTG</pcr_primer_p1>
		<pcr_primer_p2>GTGATAGCAGAAGATGGTTAAGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTGATGTTTGTTTGTACAAGTGGTTAATTATGTTTGAATTAGTAAACCTAGCCGCGCGAACTGTGTGATTTCTGATGTTGAATGTGTGCTAGGACCAGCCGACTCGTATACAGATACAAGACCAAGATTTTAAAAAAACAGTAGGTCAAATTGGAACATTCAAAACTTAATTCAGATTTTCTACTTCAAAGATTACGGTTGTTTGCTAACCTCACATTGGAGAAGGTTCTTAACCATCTTCTGCTATCAC</canonical_amplicon>
		<polymorphic_amplicon>ATTGATGTTTGTTTGTACAAGTGGTTAATTATGTTTGAATTAGTAAACCTAGCCGCGCGAACTGTGTGATTTCTGATGTTGAATGTGTGCTAGGACCAGCCGACTCGTATACAGATACAAGACCAAGATTTTAAAAAAACAGTAGGTCAAATTGGAACATTCAAAACTTAATTCAGATTTTCTACTTYAAAGATTACGGTTGTTTGCTAACCTCACATTGGAGAAGGTTCTTAACCATCTTCTGCTATCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3051</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>151224</contig_pos>
        <strand>+</strand>
        <context>TGCGTTATAC[C/T]GGCTGCGTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGTTTCTTTCGTATTTCACGAACTTTTCCTCCAATTGTTGCGTTATAC</left_flank>
        <right_flank>GGCTGCGTTCTGCCTGGCGCCAAATTGTCGTCACGATTCAAGACGTTCAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTTTCACCACTTCCACTATCACCGGAAAATAAAGTAGAAGCGGGATGATACGAAACTCGGATATATTCTTTCATATCATCTCTTGGCAATGAGCCAGGAGGTTTCTGGGCCAGATTGAAGAATGTTGAGTTGACACATGGTGATTGATAAGAAACAAAAGACATGCGGGATTGATGTTTGTTTGTACAAGTGGTTAATTATGTTTGAATTAGTAAACCTAGCCGCGCGAACTGTGTGATTTCTGATGTTGAATGTGTGCTAGGACCAGCCGACTCGTATACAGATACAAGACCAAGATTTTAAAAAAACAGTAGGTCAAATTGGAACATTCAAAACTTAATTCAGATTTTCTACTTCAAAGATTACGGTTGTTTGCTAACCTCACATTGGAGAAGGTTCTTAACCATCTTCTGCTATCACTGATCTGTTCTGCTCTTCTTGAGACCAAAGTTTCTTTCGTATTTCACGAACTTTTCCTCCAATTGTTGCGTTATACCGGCTGCGTTCTGCCTGGCGCCAAATTGTCGTCACGATTCAAGACGTTCATGTGGAAGTATGGTGGGGCTCCTCGCGTCAATTGGAGCTGGCACTGCGCTCCTCCGAATTTAGATCGCGGAAAAAAACCGAGGAGCGCATGGTGTGTATTTGCGCCTCGCGCCGCGCACCTGATTTTGCAAAAAATGATTGCAACTCTTTCTTCAGTTCAGTTCCATTTTCGGACTTCTCAGTTTTTCTATTCTCCCACGCACGCGCACCACAAGCTCGACTAATGATTGTCGGACGTCATACACTCCTTCCGACGACTGCGCACACATACAAACAAACAGAAATACAGTATGGAACTCCTTGTTTGCATTGCTGTTAAATATTCGCTACGCAACATTTTTTGCAACTGTTTTCTATCCCCTCTCCCCTTCTCTATCACTATCTCTATCGTTTTACCCGAATTATCAGCACACCCAGGTGCACCCATGCGACCTCCGCTAACTTTTTTAAA</canonical>
            <polymorphic>TTCTTTTCACCACTTCCACTATCACCGGAAAATAAAGTAGAAGCGGGATGATACGAAACTCGGATATATTCTTTCATATCATCTCTTGGCAATGAGCCAGGAGGTTTCTGGGCCAGATTGAAGAATGTTGAGTTGACACATGGTGATTGATAAGAAACAAAAGACATGCGGGATTGATGTTTGTTTGTACAAGTGGTTAATTATGTTTGAATTAGTAAACCTAGCCGCGCGAACTGTGTGATTTCTGATGTTGAATGTGTGCTAGGACCAGCCGACTCGTATACAGATACAAGACCAAGATTTTAAAAAAACAGTAGGTCAAATTGGAACATTCAAAACTTAATTCAGATTTTCTACTTCAAAGATTACGGTTGTTTGCTAACCTCACATTGGAGAAGGTTCTTAACCATCTTCTGCTATCACTGATCTGTTCTGCTCTTCTTGAGACCAAAGTTTCTTTCGTATTTCACGAACTTTTCCTCCAATTGTTGCGTTATACYGGCTGCGTTCTGCCTGGCGCCAAATTGTCGTCACGATTCAAGACGTTCATGTGGAAGTATGGTGGGGCTCCTCGCGTCAATTGGAGCTGGCACTGCGCTCCTCCGAATTTAGATCGCGGAAAAAAACCGAGGAGCGCATGGTGTGTATTTGCGCCTCGCGCCGCGCACCTGATTTTGCAAAAAATGATTGCAACTCTTTCTTCAGTTCAGTTCCATTTTCGGACTTCTCAGTTTTTCTATTCTCCCACGCACGCGCACCACAAGCTCGACTAATGATTGTCGGACGTCATACACTCCTTCCGACGACTGCGCACACATACAAACAAACAGAAATACAGTATGGAACTCCTTGTTTGCATTGCTGTTAAATATTCGCTACGCAACATTTTTTGCAACTGTTTTCTATCCCCTCTCCCCTTCTCTATCACTATCTCTATCGTTTTACCCGAATTATCAGCACACCCAGGTGCACCCATGCGACCTCCGCTAACTTTTTTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 474 25</canonical_bands>
                <polymorphic_bands>975 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACCAAAGTTTCTTTCGTATTT</pcr_primer_p1>
		<pcr_primer_p2>GAACTGAACTGAAGAAAGAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>AGACCAAAGTTTCTTTCGTATTTCACGAACTTTTCCTCCAATTGTTGCGTTATACCGGCTGCGTTCTGCCTGGCGCCAAATTGTCGTCACGATTCAAGACGTTCATGTGGAAGTATGGTGGGGCTCCTCGCGTCAATTGGAGCTGGCACTGCGCTCCTCCGAATTTAGATCGCGGAAAAAAACCGAGGAGCGCATGGTGTGTATTTGCGCCTCGCGCCGCGCACCTGATTTTGCAAAAAATGATTGCAACTCTTTCTTCAGTTCAGTTC</canonical_amplicon>
		<polymorphic_amplicon>AGACCAAAGTTTCTTTCGTATTTCACGAACTTTTCCTCCAATTGTTGCGTTATACYGGCTGCGTTCTGCCTGGCGCCAAATTGTCGTCACGATTCAAGACGTTCATGTGGAAGTATGGTGGGGCTCCTCGCGTCAATTGGAGCTGGCACTGCGCTCCTCCGAATTTAGATCGCGGAAAAAAACCGAGGAGCGCATGGTGTGTATTTGCGCCTCGCGCCGCGCACCTGATTTTGCAAAAAATGATTGCAACTCTTTCTTCAGTTCAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3052</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>153018</contig_pos>
        <strand>+</strand>
        <context>GATGTTGACG[A/G]TGTTGAAACT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCACTCAGCCAGTGTTCCATGTGACACTCATGGCGCCGTTGATGTTGACG</left_flank>
        <right_flank>TGTTGAAACTACTGTTGGAAGGCTGACGACGTGGGTGACCAAGAAGACCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCCGTGGCGAGAATTTATGGCTTCGCTAGTTCATTATGCTGGGAAGTCATTAAGTGTTTTCATTCAGTGATTTATAGGTTGAACTTTTGAAAGGACGCGGTTGACAGGAAAACATAGGAACGAAGGGTCCTGCTTAGGTTCGGATGCCGAACTTCAAGTATGTAGATGATTGGTCTAAATCGCAATAAGATTGTTCCCACATACGTCCCCAGATCTGAACCAACTCGTGCTTCTCGGCAAATAGACTCGACAATGCTGCCGTCATCAGTTTCTGTATGACACAAAAGAGTTCGAGGAGTTTTCAGAAAAATCATCTCAATAGTTCAATCATAAGACACTAGTTTCGTGTTTTTAGAGAAGAATTCTCACACTTCCAGTATGTCAGTTTATGTAGAGAACCCATCAAATTTTGGCATAGTCAGCAAAGTGTGTAAGTAGGTTGTTTGTGTCACTCAGCCAGTGTTCCATGTGACACTCATGGCGCCGTTGATGTTGACGGTGTTGAAACTACTGTTGGAAGGCTGACGACGTGGGTGACCAAGAAGACCAGGAACATTTAGGAAATTTCAGTTCCACACTTCTTCACTTTCATTTGAAGAAAATTAATAAAGCAAACAGCTATATTACTATGTTTTTCTTAGATTACTCTACTTATTTTAGACTTTTCACATATGGTCGTGCAACATTTCTTTTTTTCAACCCCTCCCGTTTTTTTAGTTCAAACACTGATAAATTTAGCAAGGCGACTCGACCGGTTGTAGAAGAAGAAGCCACGTGATTTATTGCAAACAATGAGCAAACATTCCGTAGGAGGTTTCATCTGTGCAAAGTGTTTTTAGAATGAAAAAAAGGCTGTTCGCATTGTTTTTTTACTGTTAATCGTTCAGGGTCGGAACTCCTCTCGTGTCACAGAAAAAAGTGGCTTCTGATCGTTTCGATTTTTTGACGACACAAATCAATTGACCCTAATAATAGCCTGCAAATAGTTGCGAATTGCGG</canonical>
            <polymorphic>TGCCGTGGCGAGAATTTATGGCTTCGCTAGTTCATTATGCTGGGAAGTCATTAAGTGTTTTCATTCAGTGATTTATAGGTTGAACTTTTGAAAGGACGCGGTTGACAGGAAAACATAGGAACGAAGGGTCCTGCTTAGGTTCGGATGCCGAACTTCAAGTATGTAGATGATTGGTCTAAATCGCAATAAGATTGTTCCCACATACGTCCCCAGATCTGAACCAACTCGTGCTTCTCGGCAAATAGACTCGACAATGCTGCCGTCATCAGTTTCTGTATGACACAAAAGAGTTCGAGGAGTTTTCAGAAAAATCATCTCAATAGTTCAATCATAAGACACTAGTTTCGTGTTTTTAGAGAAGAATTCTCACACTTCCAGTATGTCAGTTTATGTAGAGAACCCATCAAATTTTGGCATAGTCAGCAAAGTGTGTAAGTAGGTTGTTTGTGTCACTCAGCCAGTGTTCCATGTGACACTCATGGCGCCGTTGATGTTGACGRTGTTGAAACTACTGTTGGAAGGCTGACGACGTGGGTGACCAAGAAGACCAGGAACATTTAGGAAATTTCAGTTCCACACTTCTTCACTTTCATTTGAAGAAAATTAATAAAGCAAACAGCTATATTACTATGTTTTTCTTAGATTACTCTACTTATTTTAGACTTTTCACATATGGTCGTGCAACATTTCTTTTTTTCAACCCCTCCCGTTTTTTTAGTTCAAACACTGATAAATTTAGCAAGGCGACTCGACCGGTTGTAGAAGAAGAAGCCACGTGATTTATTGCAAACAATGAGCAAACATTCCGTAGGAGGTTTCATCTGTGCAAAGTGTTTTTAGAATGAAAAAAAGGCTGTTCGCATTGTTTTTTTACTGTTAATCGTTCAGGGTCGGAACTCCTCTCGTGTCACAGAAAAAAGTGGCTTCTGATCGTTTCGATTTTTTGACGACACAAATCAATTGACCCTAATAATAGCCTGCAAATAGTTGCGAATTGCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>499 362 125 14</canonical_bands>
                <polymorphic_bands>513 362 125</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>130 83 74 59 56 52 50 48 48 48 45 39 31 30 30 27 20 17 13 12 12 11 11 9 8 7 7 4 4 3 3 3 2 2 2</canonical_bands>
                <polymorphic_bands>130 83 74 59 58 56 52 50 48 48 48 45 39 30 30 20 17 13 12 12 11 11 9 8 7 7 4 4 3 3 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGTAAGTAGGTTGTTTGTGTCA</pcr_primer_p1>
		<pcr_primer_p2>ACGACCATATGTGAAAAGTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTGTAAGTAGGTTGTTTGTGTCACTCAGCCAGTGTTCCATGTGACACTCATGGCGCCGTTGATGTTGACGGTGTTGAAACTACTGTTGGAAGGCTGACGACGTGGGTGACCAAGAAGACCAGGAACATTTAGGAAATTTCAGTTCCACACTTCTTCACTTTCATTTGAAGAAAATTAATAAAGCAAACAGCTATATTACTATGTTTTTCTTAGATTACTCTACTTATTTTAGACTTTTCACATATGGTCGT</canonical_amplicon>
		<polymorphic_amplicon>GTGTAAGTAGGTTGTTTGTGTCACTCAGCCAGTGTTCCATGTGACACTCATGGCGCCGTTGATGTTGACGRTGTTGAAACTACTGTTGGAAGGCTGACGACGTGGGTGACCAAGAAGACCAGGAACATTTAGGAAATTTCAGTTCCACACTTCTTCACTTTCATTTGAAGAAAATTAATAAAGCAAACAGCTATATTACTATGTTTTTCTTAGATTACTCTACTTATTTTAGACTTTTCACATATGGTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3053</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>152893</contig_pos>
        <strand>+</strand>
        <context>TCTCACACTT[C/T]CAGTATGTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAATCATAAGACACTAGTTTCGTGTTTTTAGAGAAGAATTCTCACACTT</left_flank>
        <right_flank>CAGTATGTCAGTTTATGTAGAGAACCCATCAAATTTTGGCATAGTCAGCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAATGGATGGTACATGGTGCCAGGCACAAGGCCACGAGGCCGCTACTGAGTCATCTGGCTAATGAATGGTTGGGAATAGAAAAAAGAGAGGGAGCGCGAGTGAGGAACTGGTCCTAGGAGGTTCTGCCGTGGCGAGAATTTATGGCTTCGCTAGTTCATTATGCTGGGAAGTCATTAAGTGTTTTCATTCAGTGATTTATAGGTTGAACTTTTGAAAGGACGCGGTTGACAGGAAAACATAGGAACGAAGGGTCCTGCTTAGGTTCGGATGCCGAACTTCAAGTATGTAGATGATTGGTCTAAATCGCAATAAGATTGTTCCCACATACGTCCCCAGATCTGAACCAACTCGTGCTTCTCGGCAAATAGACTCGACAATGCTGCCGTCATCAGTTTCTGTATGACACAAAAGAGTTCGAGGAGTTTTCAGAAAAATCATCTCAATAGTTCAATCATAAGACACTAGTTTCGTGTTTTTAGAGAAGAATTCTCACACTTCCAGTATGTCAGTTTATGTAGAGAACCCATCAAATTTTGGCATAGTCAGCAAAGTGTGTAAGTAGGTTGTTTGTGTCACTCAGCCAGTGTTCCATGTGACACTCATGGCGCCGTTGATGTTGACGGTGTTGAAACTACTGTTGGAAGGCTGACGACGTGGGTGACCAAGAAGACCAGGAACATTTAGGAAATTTCAGTTCCACACTTCTTCACTTTCATTTGAAGAAAATTAATAAAGCAAACAGCTATATTACTATGTTTTTCTTAGATTACTCTACTTATTTTAGACTTTTCACATATGGTCGTGCAACATTTCTTTTTTTCAACCCCTCCCGTTTTTTTAGTTCAAACACTGATAAATTTAGCAAGGCGACTCGACCGGTTGTAGAAGAAGAAGCCACGTGATTTATTGCAAACAATGAGCAAACATTCCGTAGGAGGTTTCATCTGTGCAAAGTGTTTTTAGAATGAAAAAAAGGCTGTTCGCATTGTTTTTTTACT</canonical>
            <polymorphic>ACAATGGATGGTACATGGTGCCAGGCACAAGGCCACGAGGCCGCTACTGAGTCATCTGGCTAATGAATGGTTGGGAATAGAAAAAAGAGAGGGAGCGCGAGTGAGGAACTGGTCCTAGGAGGTTCTGCCGTGGCGAGAATTTATGGCTTCGCTAGTTCATTATGCTGGGAAGTCATTAAGTGTTTTCATTCAGTGATTTATAGGTTGAACTTTTGAAAGGACGCGGTTGACAGGAAAACATAGGAACGAAGGGTCCTGCTTAGGTTCGGATGCCGAACTTCAAGTATGTAGATGATTGGTCTAAATCGCAATAAGATTGTTCCCACATACGTCCCCAGATCTGAACCAACTCGTGCTTCTCGGCAAATAGACTCGACAATGCTGCCGTCATCAGTTTCTGTATGACACAAAAGAGTTCGAGGAGTTTTCAGAAAAATCATCTCAATAGTTCAATCATAAGACACTAGTTTCGTGTTTTTAGAGAAGAATTCTCACACTTYCAGTATGTCAGTTTATGTAGAGAACCCATCAAATTTTGGCATAGTCAGCAAAGTGTGTAAGTAGGTTGTTTGTGTCACTCAGCCAGTGTTCCATGTGACACTCATGGCGCCGTTGATGTTGACGGTGTTGAAACTACTGTTGGAAGGCTGACGACGTGGGTGACCAAGAAGACCAGGAACATTTAGGAAATTTCAGTTCCACACTTCTTCACTTTCATTTGAAGAAAATTAATAAAGCAAACAGCTATATTACTATGTTTTTCTTAGATTACTCTACTTATTTTAGACTTTTCACATATGGTCGTGCAACATTTCTTTTTTTCAACCCCTCCCGTTTTTTTAGTTCAAACACTGATAAATTTAGCAAGGCGACTCGACCGGTTGTAGAAGAAGAAGCCACGTGATTTATTGCAAACAATGAGCAAACATTCCGTAGGAGGTTTCATCTGTGCAAAGTGTTTTTAGAATGAAAAAAAGGCTGTTCGCATTGTTTTTTTACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAAGATTGTTCCCACATACG</pcr_primer_p1>
		<pcr_primer_p2>TTACACACTTTGCTGACTATGC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATAAGATTGTTCCCACATACGTCCCCAGATCTGAACCAACTCGTGCTTCTCGGCAAATAGACTCGACAATGCTGCCGTCATCAGTTTCTGTATGACACAAAAGAGTTCGAGGAGTTTTCAGAAAAATCATCTCAATAGTTCAATCATAAGACACTAGTTTCGTGTTTTTAGAGAAGAATTCTCACACTTCCAGTATGTCAGTTTATGTAGAGAACCCATCAAATTTTGGCATAGTCAGCAAAGTGTGTAA</canonical_amplicon>
		<polymorphic_amplicon>AATAAGATTGTTCCCACATACGTCCCCAGATCTGAACCAACTCGTGCTTCTCGGCAAATAGACTCGACAATGCTGCCGTCATCAGTTTCTGTATGACACAAAAGAGTTCGAGGAGTTTTCAGAAAAATCATCTCAATAGTTCAATCATAAGACACTAGTTTCGTGTTTTTAGAGAAGAATTCTCACACTTYCAGTATGTCAGTTTATGTAGAGAACCCATCAAATTTTGGCATAGTCAGCAAAGTGTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3054</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>231779</contig_pos>
        <strand>+</strand>
        <context>CGTTTGAAGA[A/G]CGACTGATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAATTACAGGATCTCTTTCTCCGTTTGGAGATAAAATGACGTTTGAAGA</left_flank>
        <right_flank>CGACTGATGAATACACTGTGCAGTTTTATATATGGAGTTTTATTGAGACC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGGAAGCATACGACGGATATAATTTATATTCAACCTGATGAAAAACTGAAGGAACTTGGAAAAGTGATAAAATCCGTTGAGTTTACAAAATATTGGACAGAAGAGCTTACTGTATTCTCCATGATTTCATCTATCAAACTATTCCAGAAAATGTTTTTCAAAATTTATGAAAACTTCAAGAAGGACTTGCGAGTTTTGGATAGTTTGAAAACTCGAAAATTCGATGCAATAATTTATGAAGTTTTTGCCTTCAATGCAATTGGTACCAAGTGCTTTGTAATGTCTATAACTTTTGAAAATTTCAGCAATTCAGGAATATCTCGATATCAGAACATTGTATCCAGCCTTTTCCGTCACTCACAGCTCTTCACTGAGCAATTCTATTGGGGAGCCATCTTCACCAGCTACACTGTCAGGTGGCTAAATATTTGATTCGAATTTTAACTGAGAATTACAGGATCTCTTTCTCCGTTTGGAGATAAAATGACGTTTGAAGAACGACTGATGAATACACTGTGCAGTTTTATATATGGAGTTTTATTGAGACCACCGACGATGAGTTCATACAAATCTCCCTACCATACCATTGATTTGAATGTTAGAATTGGATTTTATCATAACTTGAACAATATTCTTACCTTTAGGAAGCAGAGTCTCGTGCACCATTTGTCTTCTTAAATTCCAATCCATATCTCGATTTCCCGCGTCCAACGCTTACAAAAACTGTCCAGATTGGAGGGATTACAGTGAACAGAACTCAAATGAAACAAGAAAAATTACCGTTGGAATTTGATAAAATTCTGGAAATTAGACAGAAAACGGTGTTAATTTCATTTGGGACAATTATGCTCTCCAAAGATACGCCAGAAGACTACAAGTAAAACATTCGAAAGGAAAAGTTCAACTGGTGCTTTTTTTCAGAATCAACATTCTCAAAGTGATTGAATCATTTCCAAATGTAACATTTATTTGGAAGTATGAATCTGACACATTCGAAA</canonical>
            <polymorphic>ATTGGAAGCATACGACGGATATAATTTATATTCAACCTGATGAAAAACTGAAGGAACTTGGAAAAGTGATAAAATCCGTTGAGTTTACAAAATATTGGACAGAAGAGCTTACTGTATTCTCCATGATTTCATCTATCAAACTATTCCAGAAAATGTTTTTCAAAATTTATGAAAACTTCAAGAAGGACTTGCGAGTTTTGGATAGTTTGAAAACTCGAAAATTCGATGCAATAATTTATGAAGTTTTTGCCTTCAATGCAATTGGTACCAAGTGCTTTGTAATGTCTATAACTTTTGAAAATTTCAGCAATTCAGGAATATCTCGATATCAGAACATTGTATCCAGCCTTTTCCGTCACTCACAGCTCTTCACTGAGCAATTCTATTGGGGAGCCATCTTCACCAGCTACACTGTCAGGTGGCTAAATATTTGATTCGAATTTTAACTGAGAATTACAGGATCTCTTTCTCCGTTTGGAGATAAAATGACGTTTGAAGARCGACTGATGAATACACTGTGCAGTTTTATATATGGAGTTTTATTGAGACCACCGACGATGAGTTCATACAAATCTCCCTACCATACCATTGATTTGAATGTTAGAATTGGATTTTATCATAACTTGAACAATATTCTTACCTTTAGGAAGCAGAGTCTCGTGCACCATTTGTCTTCTTAAATTCCAATCCATATCTCGATTTCCCGCGTCCAACGCTTACAAAAACTGTCCAGATTGGAGGGATTACAGTGAACAGAACTCAAATGAAACAAGAAAAATTACCGTTGGAATTTGATAAAATTCTGGAAATTAGACAGAAAACGGTGTTAATTTCATTTGGGACAATTATGCTCTCCAAAGATACGCCAGAAGACTACAAGTAAAACATTCGAAAGGAAAAGTTCAACTGGTGCTTTTTTTCAGAATCAACATTCTCAAAGTGATTGAATCATTTCCAAATGTAACATTTATTTGGAAGTATGAATCTGACACATTCGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCTTCACTGAGCAATTCTAT</pcr_primer_p1>
		<pcr_primer_p2>ATCCAATTCTAACATTCAAATCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCTCTTCACTGAGCAATTCTATTGGGGAGCCATCTTCACCAGCTACACTGTCAGGTGGCTAAATATTTGATTCGAATTTTAACTGAGAATTACAGGATCTCTTTCTCCGTTTGGAGATAAAATGACGTTTGAAGAACGACTGATGAATACACTGTGCAGTTTTATATATGGAGTTTTATTGAGACCACCGACGATGAGTTCATACAAATCTCCCTACCATACCATTGATTTGAATGTTAGAATTGGAT</canonical_amplicon>
		<polymorphic_amplicon>GCTCTTCACTGAGCAATTCTATTGGGGAGCCATCTTCACCAGCTACACTGTCAGGTGGCTAAATATTTGATTCGAATTTTAACTGAGAATTACAGGATCTCTTTCTCCGTTTGGAGATAAAATGACGTTTGAAGARCGACTGATGAATACACTGTGCAGTTTTATATATGGAGTTTTATTGAGACCACCGACGATGAGTTCATACAAATCTCCCTACCATACCATTGATTTGAATGTTAGAATTGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3055</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>234403</contig_pos>
        <strand>+</strand>
        <context>TCTTGGGATC[C/T]CGAAAAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTCACCGTGAAATCGGCGTTTCCGGTAATTTTTTTCTTTCTTGGGATC</left_flank>
        <right_flank>CGAAAAAAAAAACGGAGAAAACAACTCGGTTTTTGAAAAGAGAAAATAAA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAACTCCATCACCACCTCCGGCAGCTTGCATAGATCCTAGGAATGGAGGGATAAGGTTAGATGACATTAGTTTAATTAATTACCAATATAAACGAATAGAAGTACTGCAATGAACTCTGCAGCACATTTCGAGTAGATCGAGTAGTCCTTTTCGTCTTCAATCATTTTTGATACAATGTCGGAATCACTCTTCTAGAAAAATAACGAAGGTTGAGAACACTCTGTCAGAGGAAAGGGGAAATCGAGTGAATGACAAAATAGCCCTCCAATTATCCCGAGTATTTCTTGATTTGAAAAATGACAGAAGTTCGAGGATGGATTGATCCAATGGAACCACAACTAGTCTATTTGAATAAATGTTTTCTGTTCGGATCGGGCGTATTTCAAAACAACTTTCAAAAACGAATCGAGAATCGCTCAAAGCTCAGGGTCCCTCACTCGGAGTCCAATTCACCGTGAAATCGGCGTTTCCGGTAATTTTTTTCTTTCTTGGGATCTCGAAAAAAAAAACGGAGAAAACAACTCGGTTTTTGAAAAGAGAAAATAAACGATTTCCTTAGAGTTTGTCTACTTATGAATAATAGAATAAAAGAAGAGAATCTACGATGACTGGAGAGAACCATAAACGATGGGAACGTACGGAATGGGTGAACGAAGAAGACGATGGTGAGGCACCTCCTACCATTCTATACCGGTCGTTTGATTCGTTCTTGTTGTTCATTTTTGAAGGTGACCACCAGAAGGAGTTCAGAAATGAAGAGAAAGTGGGAGAGAGGGAGAGAGAGTCTTCACATAAAGTGCGCCTTTTTCCTCAAAAAGTCATTTAAGTTTTTCTGTTGCCCGTTTTCGATCACGCTGGTTATGATTTGTTACCAAACTTGGGGTTTCTAAAATTGGTATACTGAAATTAATGAGATTTTTTAGCCATTAATTGCGATGTTGGTTGGAAACAGTCACAACATTTGAAAACAAACCACAACAAATATGATCGAACGTCC</canonical>
            <polymorphic>AAGAACTCCATCACCACCTCCGGCAGCTTGCATAGATCCTAGGAATGGAGGGATAAGGTTAGATGACATTAGTTTAATTAATTACCAATATAAACGAATAGAAGTACTGCAATGAACTCTGCAGCACATTTCGAGTAGATCGAGTAGTCCTTTTCGTCTTCAATCATTTTTGATACAATGTCGGAATCACTCTTCTAGAAAAATAACGAAGGTTGAGAACACTCTGTCAGAGGAAAGGGGAAATCGAGTGAATGACAAAATAGCCCTCCAATTATCCCGAGTATTTCTTGATTTGAAAAATGACAGAAGTTCGAGGATGGATTGATCCAATGGAACCACAACTAGTCTATTTGAATAAATGTTTTCTGTTCGGATCGGGCGTATTTCAAAACAACTTTCAAAAACGAATCGAGAATCGCTCAAAGCTCAGGGTCCCTCACTCGGAGTCCAATTCACCGTGAAATCGGCGTTTCCGGTAATTTTTTTCTTTCTTGGGATCYCGAAAAAAAAAACGGAGAAAACAACTCGGTTTTTGAAAAGAGAAAATAAACGATTTCCTTAGAGTTTGTCTACTTATGAATAATAGAATAAAAGAAGAGAATCTACGATGACTGGAGAGAACCATAAACGATGGGAACGTACGGAATGGGTGAACGAAGAAGACGATGGTGAGGCACCTCCTACCATTCTATACCGGTCGTTTGATTCGTTCTTGTTGTTCATTTTTGAAGGTGACCACCAGAAGGAGTTCAGAAATGAAGAGAAAGTGGGAGAGAGGGAGAGAGAGTCTTCACATAAAGTGCGCCTTTTTCCTCAAAAAGTCATTTAAGTTTTTCTGTTGCCCGTTTTCGATCACGCTGGTTATGATTTGTTACCAAACTTGGGGTTTCTAAAATTGGTATACTGAAATTAATGAGATTTTTTAGCCATTAATTGCGATGTTGGTTGGAAACAGTCACAACATTTGAAAACAAACCACAACAAATATGATCGAACGTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>505 461 34</canonical_bands>
                <polymorphic_bands>966 34</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>349 142 132 104 98 91 67 9 8</canonical_bands>
                <polymorphic_bands>440 142 132 104 98 67 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCAAAACAACTTTCAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GTTTATGGTTCTCTCCAGTCAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTTCAAAACAACTTTCAAAAACGAATCGAGAATCGCTCAAAGCTCAGGGTCCCTCACTCGGAGTCCAATTCACCGTGAAATCGGCGTTTCCGGTAATTTTTTTCTTTCTTGGGATCTCGAAAAAAAAAACGGAGAAAACAACTCGGTTTTTGAAAAGAGAAAATAAACGATTTCCTTAGAGTTTGTCTACTTATGAATAATAGAATAAAAGAAGAGAATCTACGATGACTGGAGAGAACCATAAAC</canonical_amplicon>
		<polymorphic_amplicon>ATTTCAAAACAACTTTCAAAAACGAATCGAGAATCGCTCAAAGCTCAGGGTCCCTCACTCGGAGTCCAATTCACCGTGAAATCGGCGTTTCCGGTAATTTTTTTCTTTCTTGGGATCYCGAAAAAAAAAACGGAGAAAACAACTCGGTTTTTGAAAAGAGAAAATAAACGATTTCCTTAGAGTTTGTCTACTTATGAATAATAGAATAAAAGAAGAGAATCTACGATGACTGGAGAGAACCATAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3056</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>234135</contig_pos>
        <strand>+</strand>
        <context>CTCTGTCAGA[A/G]GAAAGGGGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGAATCACTCTTCTAGAAAAATAACGAAGGTTGAGAACACTCTGTCAGA</left_flank>
        <right_flank>GAAAGGGGAAATCGAGTGAATGACAAAATAGCCCTCCAATTATCCCGAGT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATAAAGAAATGAAGTGTGAATTCAAGTTTCTGAAATGGAATCAAAGTTCCAAGAGTACTTTGTACAGACACTTACCCGCACAAGAAGGGCGCCGAAGACACTTCCCAGTAGTTGAGAGGCAATATAGCAGACTGCGTGGATTGGGCTGATACGACCAACTAAAGCAATTCCGAATGTGACTGCTGGATTGATATGGGCTCCACTGACACCTCCAAAGGTTGCAGCAAGTACAAAAATGGCAACTCCGTGAGCAAATGCTGCATGAAGAACTCCATCACCACCTCCGGCAGCTTGCATAGATCCTAGGAATGGAGGGATAAGGTTAGATGACATTAGTTTAATTAATTACCAATATAAACGAATAGAAGTACTGCAATGAACTCTGCAGCACATTTCGAGTAGATCGAGTAGTCCTTTTCGTCTTCAATCATTTTTGATACAATGTCGGAATCACTCTTCTAGAAAAATAACGAAGGTTGAGAACACTCTGTCAGAGGAAAGGGGAAATCGAGTGAATGACAAAATAGCCCTCCAATTATCCCGAGTATTTCTTGATTTGAAAAATGACAGAAGTTCGAGGATGGATTGATCCAATGGAACCACAACTAGTCTATTTGAATAAATGTTTTCTGTTCGGATCGGGCGTATTTCAAAACAACTTTCAAAAACGAATCGAGAATCGCTCAAAGCTCAGGGTCCCTCACTCGGAGTCCAATTCACCGTGAAATCGGCGTTTCCGGTAATTTTTTTCTTTCTTGGGATCTCGAAAAAAAAAACGGAGAAAACAACTCGGTTTTTGAAAAGAGAAAATAAACGATTTCCTTAGAGTTTGTCTACTTATGAATAATAGAATAAAAGAAGAGAATCTACGATGACTGGAGAGAACCATAAACGATGGGAACGTACGGAATGGGTGAACGAAGAAGACGATGGTGAGGCACCTCCTACCATTCTATACCGGTCGTTTGATTCGTTCTTGTTGTTCATTTTTGAAGG</canonical>
            <polymorphic>AAAAATAAAGAAATGAAGTGTGAATTCAAGTTTCTGAAATGGAATCAAAGTTCCAAGAGTACTTTGTACAGACACTTACCCGCACAAGAAGGGCGCCGAAGACACTTCCCAGTAGTTGAGAGGCAATATAGCAGACTGCGTGGATTGGGCTGATACGACCAACTAAAGCAATTCCGAATGTGACTGCTGGATTGATATGGGCTCCACTGACACCTCCAAAGGTTGCAGCAAGTACAAAAATGGCAACTCCGTGAGCAAATGCTGCATGAAGAACTCCATCACCACCTCCGGCAGCTTGCATAGATCCTAGGAATGGAGGGATAAGGTTAGATGACATTAGTTTAATTAATTACCAATATAAACGAATAGAAGTACTGCAATGAACTCTGCAGCACATTTCGAGTAGATCGAGTAGTCCTTTTCGTCTTCAATCATTTTTGATACAATGTCGGAATCACTCTTCTAGAAAAATAACGAAGGTTGAGAACACTCTGTCAGARGAAAGGGGAAATCGAGTGAATGACAAAATAGCCCTCCAATTATCCCGAGTATTTCTTGATTTGAAAAATGACAGAAGTTCGAGGATGGATTGATCCAATGGAACCACAACTAGTCTATTTGAATAAATGTTTTCTGTTCGGATCGGGCGTATTTCAAAACAACTTTCAAAAACGAATCGAGAATCGCTCAAAGCTCAGGGTCCCTCACTCGGAGTCCAATTCACCGTGAAATCGGCGTTTCCGGTAATTTTTTTCTTTCTTGGGATCTCGAAAAAAAAAACGGAGAAAACAACTCGGTTTTTGAAAAGAGAAAATAAACGATTTCCTTAGAGTTTGTCTACTTATGAATAATAGAATAAAAGAAGAGAATCTACGATGACTGGAGAGAACCATAAACGATGGGAACGTACGGAATGGGTGAACGAAGAAGACGATGGTGAGGCACCTCCTACCATTCTATACCGGTCGTTTGATTCGTTCTTGTTGTTCATTTTTGAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATGGAGGGATAAGGTTAGAT</pcr_primer_p1>
		<pcr_primer_p2>AATCAAGAAATACTCGGGATAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAATGGAGGGATAAGGTTAGATGACATTAGTTTAATTAATTACCAATATAAACGAATAGAAGTACTGCAATGAACTCTGCAGCACATTTCGAGTAGATCGAGTAGTCCTTTTCGTCTTCAATCATTTTTGATACAATGTCGGAATCACTCTTCTAGAAAAATAACGAAGGTTGAGAACACTCTGTCAGAGGAAAGGGGAAATCGAGTGAATGACAAAATAGCCCTCCAATTATCCCGAGTATTTCTTGATT</canonical_amplicon>
		<polymorphic_amplicon>GAATGGAGGGATAAGGTTAGATGACATTAGTTTAATTAATTACCAATATAAACGAATAGAAGTACTGCAATGAACTCTGCAGCACATTTCGAGTAGATCGAGTAGTCCTTTTCGTCTTCAATCATTTTTGATACAATGTCGGAATCACTCTTCTAGAAAAATAACGAAGGTTGAGAACACTCTGTCAGARGAAAGGGGAAATCGAGTGAATGACAAAATAGCCCTCCAATTATCCCGAGTATTTCTTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3058</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>288375</contig_pos>
        <strand>+</strand>
        <context>AGTTAGGAAA[C/T]ATTTCGAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAAACAAAGTAAAAATTTTGATTTGTTTCAACTTACAATAGTTAGGAAA</left_flank>
        <right_flank>ATTTCGAACTGAATACCTTTGTGGACTTTCATGTAAAAGATTGGAGTGCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATTCCCAATCGTACAATACGGGTGCAAAGAATAAAAGTTAACTGTTTTCGTGAATAACATAATACTGAACAAAAAATTGACCATCTGATGCACTTTTCGAGCTAATATCAATACTGTCTCCATATTCTGGAGTACTCCATCCGAGTATTTGATCAACAGGTCTCACACTGAAACCGTTTGCGTCTCCCAGTTTCACAGAATTCACCGACACCGATGAATCATCTGCCAAAGAATCCGATTGCCTAGGAAGATAAATATTGTAAAAGAGAATATGTCCCTTGCACTCACATTGGCTCCAACAAAACTTCCGCTACTAGAAAATGAGTTGACTCTATCCATATTTATCAAAATGTTCCCATCTGGTCGGTTGTACGGTTTCATATAGAATCCAGTTTTTGTTGGAAAGCTTGTAGTAGTTGATGTTCATTGATGTTCACTGAAAAGCAACGAAACAAAGTAAAAATTTTGATTTGTTTCAACTTACAATAGTTAGGAAATATTTCGAACTGAATACCTTTGTGGACTTTCATGTAAAAGATTGGAGTGCTGATTGAGAAAGGTTCAATATATGAGAAGAATCTGAAACAATGTTAAGATTACGTAGGTAAAGGGGAACTGTTGAAAAACTGCAAAGTGACATCTGAAGAAGCACAAACTGGCGAATGGCTGCTAGTAAGCATCCGAAGGAAAACTGACGGGTCGTTGACGGACTATCGACGGACCATCATTTTTTCGGCAGCCGCCCTGTACTTGTGTATAAACAAAATTCAAACTCACTTCATATTATCTGTGTAGACACAGGATTAGAAAATATTTGAGAATACGATTTTTGAATTCCATTCTTTGGTACACCTGGATATATAAAAACCGAAGAGTTCTCGGATTGGACCCAGTTATTGACCGTACTAGACTGATACGGTACCACTGAAACGTTGGAATTCAGAAACACTAGTGTACAGTTTTCTGGTTTAGTCTCATCAAAATGTATTGTCTGTTGC</canonical>
            <polymorphic>TTATTCCCAATCGTACAATACGGGTGCAAAGAATAAAAGTTAACTGTTTTCGTGAATAACATAATACTGAACAAAAAATTGACCATCTGATGCACTTTTCGAGCTAATATCAATACTGTCTCCATATTCTGGAGTACTCCATCCGAGTATTTGATCAACAGGTCTCACACTGAAACCGTTTGCGTCTCCCAGTTTCACAGAATTCACCGACACCGATGAATCATCTGCCAAAGAATCCGATTGCCTAGGAAGATAAATATTGTAAAAGAGAATATGTCCCTTGCACTCACATTGGCTCCAACAAAACTTCCGCTACTAGAAAATGAGTTGACTCTATCCATATTTATCAAAATGTTCCCATCTGGTCGGTTGTACGGTTTCATATAGAATCCAGTTTTTGTTGGAAAGCTTGTAGTAGTTGATGTTCATTGATGTTCACTGAAAAGCAACGAAACAAAGTAAAAATTTTGATTTGTTTCAACTTACAATAGTTAGGAAAYATTTCGAACTGAATACCTTTGTGGACTTTCATGTAAAAGATTGGAGTGCTGATTGAGAAAGGTTCAATATATGAGAAGAATCTGAAACAATGTTAAGATTACGTAGGTAAAGGGGAACTGTTGAAAAACTGCAAAGTGACATCTGAAGAAGCACAAACTGGCGAATGGCTGCTAGTAAGCATCCGAAGGAAAACTGACGGGTCGTTGACGGACTATCGACGGACCATCATTTTTTCGGCAGCCGCCCTGTACTTGTGTATAAACAAAATTCAAACTCACTTCATATTATCTGTGTAGACACAGGATTAGAAAATATTTGAGAATACGATTTTTGAATTCCATTCTTTGGTACACCTGGATATATAAAAACCGAAGAGTTCTCGGATTGGACCCAGTTATTGACCGTACTAGACTGATACGGTACCACTGAAACGTTGGAATTCAGAAACACTAGTGTACAGTTTTCTGGTTTAGTCTCATCAAAATGTATTGTCTGTTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>314 258 242 186</canonical_bands>
                <polymorphic_bands>556 258 186</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTTCCGCTACTAGAAAATGAG</pcr_primer_p1>
		<pcr_primer_p2>AATCAGCACTCCAATCTTTTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACTTCCGCTACTAGAAAATGAGTTGACTCTATCCATATTTATCAAAATGTTCCCATCTGGTCGGTTGTACGGTTTCATATAGAATCCAGTTTTTGTTGGAAAGCTTGTAGTAGTTGATGTTCATTGATGTTCACTGAAAAGCAACGAAACAAAGTAAAAATTTTGATTTGTTTCAACTTACAATAGTTAGGAAATATTTCGAACTGAATACCTTTGTGGACTTTCATGTAAAAGATTGGAGTGCTGATT</canonical_amplicon>
		<polymorphic_amplicon>AACTTCCGCTACTAGAAAATGAGTTGACTCTATCCATATTTATCAAAATGTTCCCATCTGGTCGGTTGTACGGTTTCATATAGAATCCAGTTTTTGTTGGAAAGCTTGTAGTAGTTGATGTTCATTGATGTTCACTGAAAAGCAACGAAACAAAGTAAAAATTTTGATTTGTTTCAACTTACAATAGTTAGGAAAYATTTCGAACTGAATACCTTTGTGGACTTTCATGTAAAAGATTGGAGTGCTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3059</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>288436</contig_pos>
        <strand>+</strand>
        <context>GATTGAGAAA[G/T]GTTCAATATA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAATACCTTTGTGGACTTTCATGTAAAAGATTGGAGTGCTGATTGAGAAA</left_flank>
        <right_flank>GTTCAATATATGAGAAGAATCTGAAACAATGTTAAGATTACGTAGGTAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATACTGAACAAAAAATTGACCATCTGATGCACTTTTCGAGCTAATATCAATACTGTCTCCATATTCTGGAGTACTCCATCCGAGTATTTGATCAACAGGTCTCACACTGAAACCGTTTGCGTCTCCCAGTTTCACAGAATTCACCGACACCGATGAATCATCTGCCAAAGAATCCGATTGCCTAGGAAGATAAATATTGTAAAAGAGAATATGTCCCTTGCACTCACATTGGCTCCAACAAAACTTCCGCTACTAGAAAATGAGTTGACTCTATCCATATTTATCAAAATGTTCCCATCTGGTCGGTTGTACGGTTTCATATAGAATCCAGTTTTTGTTGGAAAGCTTGTAGTAGTTGATGTTCATTGATGTTCACTGAAAAGCAACGAAACAAAGTAAAAATTTTGATTTGTTTCAACTTACAATAGTTAGGAAATATTTCGAACTGAATACCTTTGTGGACTTTCATGTAAAAGATTGGAGTGCTGATTGAGAAAGGTTCAATATATGAGAAGAATCTGAAACAATGTTAAGATTACGTAGGTAAAGGGGAACTGTTGAAAAACTGCAAAGTGACATCTGAAGAAGCACAAACTGGCGAATGGCTGCTAGTAAGCATCCGAAGGAAAACTGACGGGTCGTTGACGGACTATCGACGGACCATCATTTTTTCGGCAGCCGCCCTGTACTTGTGTATAAACAAAATTCAAACTCACTTCATATTATCTGTGTAGACACAGGATTAGAAAATATTTGAGAATACGATTTTTGAATTCCATTCTTTGGTACACCTGGATATATAAAAACCGAAGAGTTCTCGGATTGGACCCAGTTATTGACCGTACTAGACTGATACGGTACCACTGAAACGTTGGAATTCAGAAACACTAGTGTACAGTTTTCTGGTTTAGTCTCATCAAAATGTATTGTCTGTTGCTGATCCACATCGTATACGTAAAAATTGTTGTCTGAAACATCGTTTGGGTTTGAACTTCAGC</canonical>
            <polymorphic>TAATACTGAACAAAAAATTGACCATCTGATGCACTTTTCGAGCTAATATCAATACTGTCTCCATATTCTGGAGTACTCCATCCGAGTATTTGATCAACAGGTCTCACACTGAAACCGTTTGCGTCTCCCAGTTTCACAGAATTCACCGACACCGATGAATCATCTGCCAAAGAATCCGATTGCCTAGGAAGATAAATATTGTAAAAGAGAATATGTCCCTTGCACTCACATTGGCTCCAACAAAACTTCCGCTACTAGAAAATGAGTTGACTCTATCCATATTTATCAAAATGTTCCCATCTGGTCGGTTGTACGGTTTCATATAGAATCCAGTTTTTGTTGGAAAGCTTGTAGTAGTTGATGTTCATTGATGTTCACTGAAAAGCAACGAAACAAAGTAAAAATTTTGATTTGTTTCAACTTACAATAGTTAGGAAATATTTCGAACTGAATACCTTTGTGGACTTTCATGTAAAAGATTGGAGTGCTGATTGAGAAAKGTTCAATATATGAGAAGAATCTGAAACAATGTTAAGATTACGTAGGTAAAGGGGAACTGTTGAAAAACTGCAAAGTGACATCTGAAGAAGCACAAACTGGCGAATGGCTGCTAGTAAGCATCCGAAGGAAAACTGACGGGTCGTTGACGGACTATCGACGGACCATCATTTTTTCGGCAGCCGCCCTGTACTTGTGTATAAACAAAATTCAAACTCACTTCATATTATCTGTGTAGACACAGGATTAGAAAATATTTGAGAATACGATTTTTGAATTCCATTCTTTGGTACACCTGGATATATAAAAACCGAAGAGTTCTCGGATTGGACCCAGTTATTGACCGTACTAGACTGATACGGTACCACTGAAACGTTGGAATTCAGAAACACTAGTGTACAGTTTTCTGGTTTAGTCTCATCAAAATGTATTGTCTGTTGCTGATCCACATCGTATACGTAAAAATTGTTGTCTGAAACATCGTTTGGGTTTGAACTTCAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTTGGAAAGCTTGTAGTAGT</pcr_primer_p1>
		<pcr_primer_p2>AGATGTCACTTTGCAGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTGTTGGAAAGCTTGTAGTAGTTGATGTTCATTGATGTTCACTGAAAAGCAACGAAACAAAGTAAAAATTTTGATTTGTTTCAACTTACAATAGTTAGGAAATATTTCGAACTGAATACCTTTGTGGACTTTCATGTAAAAGATTGGAGTGCTGATTGAGAAAGGTTCAATATATGAGAAGAATCTGAAACAATGTTAAGATTACGTAGGTAAAGGGGAACTGTTGAAAAACTGCAAAGTGACATCT</canonical_amplicon>
		<polymorphic_amplicon>TTTGTTGGAAAGCTTGTAGTAGTTGATGTTCATTGATGTTCACTGAAAAGCAACGAAACAAAGTAAAAATTTTGATTTGTTTCAACTTACAATAGTTAGGAAATATTTCGAACTGAATACCTTTGTGGACTTTCATGTAAAAGATTGGAGTGCTGATTGAGAAAKGTTCAATATATGAGAAGAATCTGAAACAATGTTAAGATTACGTAGGTAAAGGGGAACTGTTGAAAAACTGCAAAGTGACATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3060</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>288619</contig_pos>
        <strand>+</strand>
        <context>TTCGGCAGCC[C/G]CCCTGTACTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTGACGGGTCGTTGACGGACTATCGACGGACCATCATTTTTTCGGCAGCC</left_flank>
        <right_flank>CCCTGTACTTGTGTATAAACAAAATTCAAACTCACTTCATATTATCTGTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAGGAAGATAAATATTGTAAAAGAGAATATGTCCCTTGCACTCACATTGGCTCCAACAAAACTTCCGCTACTAGAAAATGAGTTGACTCTATCCATATTTATCAAAATGTTCCCATCTGGTCGGTTGTACGGTTTCATATAGAATCCAGTTTTTGTTGGAAAGCTTGTAGTAGTTGATGTTCATTGATGTTCACTGAAAAGCAACGAAACAAAGTAAAAATTTTGATTTGTTTCAACTTACAATAGTTAGGAAATATTTCGAACTGAATACCTTTGTGGACTTTCATGTAAAAGATTGGAGTGCTGATTGAGAAAGGTTCAATATATGAGAAGAATCTGAAACAATGTTAAGATTACGTAGGTAAAGGGGAACTGTTGAAAAACTGCAAAGTGACATCTGAAGAAGCACAAACTGGCGAATGGCTGCTAGTAAGCATCCGAAGGAAAACTGACGGGTCGTTGACGGACTATCGACGGACCATCATTTTTTCGGCAGCCGCCCTGTACTTGTGTATAAACAAAATTCAAACTCACTTCATATTATCTGTGTAGACACAGGATTAGAAAATATTTGAGAATACGATTTTTGAATTCCATTCTTTGGTACACCTGGATATATAAAAACCGAAGAGTTCTCGGATTGGACCCAGTTATTGACCGTACTAGACTGATACGGTACCACTGAAACGTTGGAATTCAGAAACACTAGTGTACAGTTTTCTGGTTTAGTCTCATCAAAATGTATTGTCTGTTGCTGATCCACATCGTATACGTAAAAATTGTTGTCTGAAACATCGTTTGGGTTTGAACTTCAGCATAAGAATCATGAAACCATTTTTACCATTCATTTGTCTTCTAGTGGTCATGTACAAAAATCCAGTCAGAAATCTCATATCAATATCTGTCAAGTTTGAAATAATAGATGCGGATTTCATGACTCGAAACGGTTGTAAAAATCCCGAATTAGAATTCATTTTATTCATTTTCAGCTGGTAGAGT</canonical>
            <polymorphic>CTAGGAAGATAAATATTGTAAAAGAGAATATGTCCCTTGCACTCACATTGGCTCCAACAAAACTTCCGCTACTAGAAAATGAGTTGACTCTATCCATATTTATCAAAATGTTCCCATCTGGTCGGTTGTACGGTTTCATATAGAATCCAGTTTTTGTTGGAAAGCTTGTAGTAGTTGATGTTCATTGATGTTCACTGAAAAGCAACGAAACAAAGTAAAAATTTTGATTTGTTTCAACTTACAATAGTTAGGAAATATTTCGAACTGAATACCTTTGTGGACTTTCATGTAAAAGATTGGAGTGCTGATTGAGAAAGGTTCAATATATGAGAAGAATCTGAAACAATGTTAAGATTACGTAGGTAAAGGGGAACTGTTGAAAAACTGCAAAGTGACATCTGAAGAAGCACAAACTGGCGAATGGCTGCTAGTAAGCATCCGAAGGAAAACTGACGGGTCGTTGACGGACTATCGACGGACCATCATTTTTTCGGCAGCCSCCCTGTACTTGTGTATAAACAAAATTCAAACTCACTTCATATTATCTGTGTAGACACAGGATTAGAAAATATTTGAGAATACGATTTTTGAATTCCATTCTTTGGTACACCTGGATATATAAAAACCGAAGAGTTCTCGGATTGGACCCAGTTATTGACCGTACTAGACTGATACGGTACCACTGAAACGTTGGAATTCAGAAACACTAGTGTACAGTTTTCTGGTTTAGTCTCATCAAAATGTATTGTCTGTTGCTGATCCACATCGTATACGTAAAAATTGTTGTCTGAAACATCGTTTGGGTTTGAACTTCAGCATAAGAATCATGAAACCATTTTTACCATTCATTTGTCTTCTAGTGGTCATGTACAAAAATCCAGTCAGAAATCTCATATCAATATCTGTCAAGTTTGAAATAATAGATGCGGATTTCATGACTCGAAACGGTTGTAAAAATCCCGAATTAGAATTCATTTTATTCATTTTCAGCTGGTAGAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>502 432 66</canonical_bands>
                <polymorphic_bands>934 66</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACTGCAAAGTGACATCT</pcr_primer_p1>
		<pcr_primer_p2>CGGTTTTTATATATCCAGGTGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACTGCAAAGTGACATCTGAAGAAGCACAAACTGGCGAATGGCTGCTAGTAAGCATCCGAAGGAAAACTGACGGGTCGTTGACGGACTATCGACGGACCATCATTTTTTCGGCAGCCGCCCTGTACTTGTGTATAAACAAAATTCAAACTCACTTCATATTATCTGTGTAGACACAGGATTAGAAAATATTTGAGAATACGATTTTTGAATTCCATTCTTTGGTACACCTGGATATATAAAAACCG</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACTGCAAAGTGACATCTGAAGAAGCACAAACTGGCGAATGGCTGCTAGTAAGCATCCGAAGGAAAACTGACGGGTCGTTGACGGACTATCGACGGACCATCATTTTTTCGGCAGCCSCCCTGTACTTGTGTATAAACAAAATTCAAACTCACTTCATATTATCTGTGTAGACACAGGATTAGAAAATATTTGAGAATACGATTTTTGAATTCCATTCTTTGGTACACCTGGATATATAAAAACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3062</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>293010</contig_pos>
        <strand>+</strand>
        <context>AAGTTCAAAT[A/T]TTGTRTGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAAAAAACATTCCTAGTTTTGTAAAGAACTGTCATTTGAAGTTCAAAT</left_flank>
        <right_flank>TTGTTTGAAGTTCAATTTTGAACTAACACTGAGATATGTGTGGAATTGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCACCAGTTAACAATTTATCTTGACAAGCCCTATGTCCAAATGGTAGTACTTGTCTCACTTTCTCTGAATCCGTTGCGTGGTATTCTGGGAAACAATCCAAAGTTTTTGCAGGAGTCGTGTGAAGTGCCTCTCTAATTCTGACAACGAATCCGATTCCAGTGAAAATTGCGGAGTTAACCTTCAGAGCAGTTACGTCGACAACTTTCCGATCCTCTCGAATGTAGTTGAAATGTGAAAGTTTTTGACCTTTTCTCATTTCGAATGGTAAAAACTTTCCAGAAGAATAGTTGAATCGAACAGGCATCATATTATCAGATTCGAGAGAATGGGAGTTGTGAAGAGTGACTGCACGAACACTGTGATCAGCGCGGAAAATGATAGCATGGGAAACTAATTTTTGATGTTCCAAAGAATTTACTCGGTGGGAAATTGCGTTTCCATCCTGAAAAAAAAACATTCCTAGTTTTGTAAAGAACTGTCATTTGAAGTTCAAATGTTGTTTGAAGTTCAATTTTGAACTAACACTGAGATATGTGTGGAATTGAGTTGACGTAGTTTCCAAATTTAGAGGATTTCTGTGACGGAGACCTCTGTATCTATGCTCCACGACTTCTCCGTTTCCAATTTTAATTTCAGCATGATACTCTCCCATTTGATGAAAAACGTTTCCCGTACGGTACCTAGAAAACAGTCAAGGACATTTAAAAAATATTTTACAAACTTTTCAATCGTTTTCAAATTCTCAGCCAACTCAAGCGGTTTTTCGTGATAAACATCTGTGAAAGACTTCAATGGCGCATTGGAATAGAAGAATCTTGCATTTGTAACACATCTCCACCATCCAGAGAGAATGATAAAATGAGAATTTCCATCGTTATCCTTGAGATACCCACGGAAGTTGATCCTCCACTTTCGGAATGGATTTCGAAGTTCAATAATAAGAGGACCGCAGATTATGGTACGGTTTTCAGCAAAATATGCATCGAATGATCCTGA</canonical>
            <polymorphic>TTTCCACCAGTTAACAATTTATCTTGACAAGCCCTATGTCCAAATGGTAGTACTTGTCTCACTTTCTCTGAATCCGTTGCGTGGTATTCTGGGAAACAATCCAAAGTTTTTGCAGGAGTCGTGTGAAGTGCCTCTCTAATTCTGACAACGAATCCGATTCCAGTGAAAATTGCGGAGTTAACCTTCAGAGCAGTTACGTCGACAACTTTCCGATCCTCTCGAATGTAGTTGAAATGTGAAAGTTTTTGACCTTTTCTCATTTCGAATGGTAAAAACTTTCCAGAAGAATAGTTGAATCGAACAGGCATCATATTATCAGATTCGAGAGAATGGGAGTTGTGAAGAGTGACTGCACGAACACTGTGATCAGCGCGGAAAATGATAGCATGGGAAACTAATTTTTGATGTTCCAAAGAATTTACTCGGTGGGAAATTGCGTTTCCATCCTGAAAAAAAAACATTCCTAGTTTTGTAAAGAACTGTCATTTGAAGTTCAAATWTTGTTTGAAGTTCAATTTTGAACTAACACTGAGATATGTGTGGAATTGAGTTGACGTAGTTTCCAAATTTAGAGGATTTCTGTGACGGAGACCTCTGTATCTATGCTCCACGACTTCTCCGTTTCCAATTTTAATTTCAGCATGATACTCTCCCATTTGATGAAAAACGTTTCCCGTACGGTACCTAGAAAACAGTCAAGGACATTTAAAAAATATTTTACAAACTTTTCAATCGTTTTCAAATTCTCAGCCAACTCAAGCGGTTTTTCGTGATAAACATCTGTGAAAGACTTCAATGGCGCATTGGAATAGAAGAATCTTGCATTTGTAACACATCTCCACCATCCAGAGAGAATGATAAAATGAGAATTTCCATCGTTATCCTTGAGATACCCACGGAAGTTGATCCTCCACTTTCGGAATGGATTTCGAAGTTCAATAATAAGAGGACCGCAGATTATGGTACGGTTTTCAGCAAAATATGCATCGAATGATCCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCATATTATCAGATTCGAGAGA</pcr_primer_p1>
		<pcr_primer_p2>GTCAACTCAATTCCACACATATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATCATATTATCAGATTCGAGAGAATGGGAGTTGTGAAGAGTGACTGCACGAACACTGTGATCAGCGCGGAAAATGATAGCATGGGAAACTAATTTTTGATGTTCCAAAGAATTTACTCGGTGGGAAATTGCGTTTCCATCCTGAAAAAAAAACATTCCTAGTTTTGTAAAGAACTGTCATTTGAAGTTCAAATGTTGTTTGAAGTTCAATTTTGAACTAACACTGAGATATGTGTGGAATTGAGTTGAC</canonical_amplicon>
		<polymorphic_amplicon>CATCATATTATCAGATTCGAGAGAATGGGAGTTGTGAAGAGTGACTGCACGAACACTGTGATCAGCGCGGAAAATGATAGCATGGGAAACTAATTTTTGATGTTCCAAAGAATTTACTCGGTGGGAAATTGCGTTTCCATCCTGAAAAAAAAACATTCCTAGTTTTGTAAAGAACTGTCATTTGAAGTTCAAATWTTGTTTGAAGTTCAATTTTGAACTAACACTGAGATATGTGTGGAATTGAGTTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3063</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>326846</contig_pos>
        <strand>+</strand>
        <context>TCGATAGCGT[C/T]AGCTGGATTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGGAGACCCGACTTGTTATAGTTTTATTGTTCCTGGTTTCGATAGCGT</left_flank>
        <right_flank>AGCTGGATTGATTCAAGTGAGTTTTTAAATTTCATTATTAGGTTAAAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAGATAAATGTGCACTAACTTGACATTATGGGCGCCCTTCTATTCAAGGTTTTACGATAACTATTTATTTTTCTCCAATTGACTTCCCGAATCAAACTACTATTGAAAAAAGAACTCTTTGAGAAAAATTCAAGTAAAAAACCACAGTCTTGTTTATCACAGAAAACGGAAAAATCTGAAACAATTCAAACTGAATCAGACCTAAAAACGGTCATTTCGGCTGATTCGTTACACTTGATTCGTCATTTCTGTTTTGATTTTTGTTCTGTTCGCCGGATCCAACATGGCCATTTCACCTGAATTTTACACTAACAATTAGTCTACTTACCTACATAACAGGTTATCAAGTAGTGAAAAAAGAGGCCGATCAAGTTCAATTTTCAAATTCTATATATAAAAACATATGAAAGACAGTTGAAACATCCTGTCTATAAGACATATCGAAATAATGGAGACCCGACTTGTTATAGTTTTATTGTTCCTGGTTTCGATAGCGTCAGCTGGATTGATTCAAGTGAGTTTTTAAATTTCATTATTAGGTTAAAAATAAAAATTGAAAGCTTTCAGAGAAGAGTAAAAAGACAATGGGGAGGCTGGGAAGGAGGTCCAGGAGGATGGCAGCAACCGGGATGGCAGCAGCACAATTGGAACAACAATATGAACAGAAACAAGATAGCAGCACAACAGCAGCAGTATAATGTATGTTGATTTCAAATTAATTACAAAAATTATGTATATTTTTCCAGTGTCAAACATCTGGAATCAACCTCATCGGACTTCCAATTAGCAGTTACAACTGCCAAAATTCAGGAATGTCGGCTCGAGTTAATACTTTACAACAGAGTCAACAAAATCAGGGAATGCTTCAAGGACCGCTTGGAGGAATCGGAGGGTTATTGAACAATTTCATGGGATGAATAAGATCAGATCAATATTTATTTCGAGTTTTTTAATTGTTGCTCATTCCTCTTCGATCTCTTCCCAATGACACAACATCC</canonical>
            <polymorphic>TTGAGATAAATGTGCACTAACTTGACATTATGGGCGCCCTTCTATTCAAGGTTTTACGATAACTATTTATTTTTCTCCAATTGACTTCCCGAATCAAACTACTATTGAAAAAAGAACTCTTTGAGAAAAATTCAAGTAAAAAACCACAGTCTTGTTTATCACAGAAAACGGAAAAATCTGAAACAATTCAAACTGAATCAGACCTAAAAACGGTCATTTCGGCTGATTCGTTACACTTGATTCGTCATTTCTGTTTTGATTTTTGTTCTGTTCGCCGGATCCAACATGGCCATTTCACCTGAATTTTACACTAACAATTAGTCTACTTACCTACATAACAGGTTATCAAGTAGTGAAAAAAGAGGCCGATCAAGTTCAATTTTCAAATTCTATATATAAAAACATATGAAAGACAGTTGAAACATCCTGTCTATAAGACATATCGAAATAATGGAGACCCGACTTGTTATAGTTTTATTGTTCCTGGTTTCGATAGCGTYAGCTGGATTGATTCAAGTGAGTTTTTAAATTTCATTATTAGGTTAAAAATAAAAATTGAAAGCTTTCAGAGAAGAGTAAAAAGACAATGGGGAGGCTGGGAAGGAGGTCCAGGAGGATGGCAGCAACCGGGATGGCAGCAGCACAATTGGAACAACAATATGAACAGAAACAAGATAGCAGCACAACAGCAGCAGTATAATGTATGTTGATTTCAAATTAATTACAAAAATTATGTATATTTTTCCAGTGTCAAACATCTGGAATCAACCTCATCGGACTTCCAATTAGCAGTTACAACTGCCAAAATTCAGGAATGTCGGCTCGAGTTAATACTTTACAACAGAGTCAACAAAATCAGGGAATGCTTCAAGGACCGCTTGGAGGAATCGGAGGGTTATTGAACAATTTCATGGGATGAATAAGATCAGATCAATATTTATTTCGAGTTTTTTAATTGTTGCTCATTCCTCTTCGATCTCTTCCCAATGACACAACATCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACAGTTGAAACATCCTGTCTAT</pcr_primer_p1>
		<pcr_primer_p2>ATATTGTTGTTCCAATTGTGCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACAGTTGAAACATCCTGTCTATAAGACATATCGAAATAATGGAGACCCGACTTGTTATAGTTTTATTGTTCCTGGTTTCGATAGCGTCAGCTGGATTGATTCAAGTGAGTTTTTAAATTTCATTATTAGGTTAAAAATAAAAATTGAAAGCTTTCAGAGAAGAGTAAAAAGACAATGGGGAGGCTGGGAAGGAGGTCCAGGAGGATGGCAGCAACCGGGATGGCAGCAGCACAATTGGAACAACAATAT</canonical_amplicon>
		<polymorphic_amplicon>GACAGTTGAAACATCCTGTCTATAAGACATATCGAAATAATGGAGACCCGACTTGTTATAGTTTTATTGTTCCTGGTTTCGATAGCGTYAGCTGGATTGATTCAAGTGAGTTTTTAAATTTCATTATTAGGTTAAAAATAAAAATTGAAAGCTTTCAGAGAAGAGTAAAAAGACAATGGGGAGGCTGGGAAGGAGGTCCAGGAGGATGGCAGCAACCGGGATGGCAGCAGCACAATTGGAACAACAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3064</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>326947</contig_pos>
        <strand>+</strand>
        <context>GGAGGCTGGG[A/G]AGGAGGTCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAATTGAAAGCTTTCAGAGAAGAGTAAAAAGACAATGGGGAGGCTGGG</left_flank>
        <right_flank>AGGAGGTCCAGGAGGATGGCAGCAACCGGGATGGCAGCAGCACAATTGGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATTGAAAAAAGAACTCTTTGAGAAAAATTCAAGTAAAAAACCACAGTCTTGTTTATCACAGAAAACGGAAAAATCTGAAACAATTCAAACTGAATCAGACCTAAAAACGGTCATTTCGGCTGATTCGTTACACTTGATTCGTCATTTCTGTTTTGATTTTTGTTCTGTTCGCCGGATCCAACATGGCCATTTCACCTGAATTTTACACTAACAATTAGTCTACTTACCTACATAACAGGTTATCAAGTAGTGAAAAAAGAGGCCGATCAAGTTCAATTTTCAAATTCTATATATAAAAACATATGAAAGACAGTTGAAACATCCTGTCTATAAGACATATCGAAATAATGGAGACCCGACTTGTTATAGTTTTATTGTTCCTGGTTTCGATAGCGTCAGCTGGATTGATTCAAGTGAGTTTTTAAATTTCATTATTAGGTTAAAAATAAAAATTGAAAGCTTTCAGAGAAGAGTAAAAAGACAATGGGGAGGCTGGGAAGGAGGTCCAGGAGGATGGCAGCAACCGGGATGGCAGCAGCACAATTGGAACAACAATATGAACAGAAACAAGATAGCAGCACAACAGCAGCAGTATAATGTATGTTGATTTCAAATTAATTACAAAAATTATGTATATTTTTCCAGTGTCAAACATCTGGAATCAACCTCATCGGACTTCCAATTAGCAGTTACAACTGCCAAAATTCAGGAATGTCGGCTCGAGTTAATACTTTACAACAGAGTCAACAAAATCAGGGAATGCTTCAAGGACCGCTTGGAGGAATCGGAGGGTTATTGAACAATTTCATGGGATGAATAAGATCAGATCAATATTTATTTCGAGTTTTTTAATTGTTGCTCATTCCTCTTCGATCTCTTCCCAATGACACAACATCCCGTTTTTGATGTTTGAATTAGTTTAAAATTCGATCGTTAAAGAAGACAAATGCTGAAAATAAATAGTTGTAATATTGAAGACGTTGGCTTGCAATCTTACC</canonical>
            <polymorphic>CTATTGAAAAAAGAACTCTTTGAGAAAAATTCAAGTAAAAAACCACAGTCTTGTTTATCACAGAAAACGGAAAAATCTGAAACAATTCAAACTGAATCAGACCTAAAAACGGTCATTTCGGCTGATTCGTTACACTTGATTCGTCATTTCTGTTTTGATTTTTGTTCTGTTCGCCGGATCCAACATGGCCATTTCACCTGAATTTTACACTAACAATTAGTCTACTTACCTACATAACAGGTTATCAAGTAGTGAAAAAAGAGGCCGATCAAGTTCAATTTTCAAATTCTATATATAAAAACATATGAAAGACAGTTGAAACATCCTGTCTATAAGACATATCGAAATAATGGAGACCCGACTTGTTATAGTTTTATTGTTCCTGGTTTCGATAGCGTCAGCTGGATTGATTCAAGTGAGTTTTTAAATTTCATTATTAGGTTAAAAATAAAAATTGAAAGCTTTCAGAGAAGAGTAAAAAGACAATGGGGAGGCTGGGRAGGAGGTCCAGGAGGATGGCAGCAACCGGGATGGCAGCAGCACAATTGGAACAACAATATGAACAGAAACAAGATAGCAGCACAACAGCAGCAGTATAATGTATGTTGATTTCAAATTAATTACAAAAATTATGTATATTTTTCCAGTGTCAAACATCTGGAATCAACCTCATCGGACTTCCAATTAGCAGTTACAACTGCCAAAATTCAGGAATGTCGGCTCGAGTTAATACTTTACAACAGAGTCAACAAAATCAGGGAATGCTTCAAGGACCGCTTGGAGGAATCGGAGGGTTATTGAACAATTTCATGGGATGAATAAGATCAGATCAATATTTATTTCGAGTTTTTTAATTGTTGCTCATTCCTCTTCGATCTCTTCCCAATGACACAACATCCCGTTTTTGATGTTTGAATTAGTTTAAAATTCGATCGTTAAAGAAGACAAATGCTGAAAATAAATAGTTGTAATATTGAAGACGTTGGCTTGCAATCTTACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCGACTTGTTATAGTTTTATTG</pcr_primer_p1>
		<pcr_primer_p2>CATACATTATACTGCTGCTGTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCCGACTTGTTATAGTTTTATTGTTCCTGGTTTCGATAGCGTCAGCTGGATTGATTCAAGTGAGTTTTTAAATTTCATTATTAGGTTAAAAATAAAAATTGAAAGCTTTCAGAGAAGAGTAAAAAGACAATGGGGAGGCTGGGAAGGAGGTCCAGGAGGATGGCAGCAACCGGGATGGCAGCAGCACAATTGGAACAACAATATGAACAGAAACAAGATAGCAGCACAACAGCAGCAGTATAATGTATG</canonical_amplicon>
		<polymorphic_amplicon>CCCGACTTGTTATAGTTTTATTGTTCCTGGTTTCGATAGCGTCAGCTGGATTGATTCAAGTGAGTTTTTAAATTTCATTATTAGGTTAAAAATAAAAATTGAAAGCTTTCAGAGAAGAGTAAAAAGACAATGGGGAGGCTGGGRAGGAGGTCCAGGAGGATGGCAGCAACCGGGATGGCAGCAGCACAATTGGAACAACAATATGAACAGAAACAAGATAGCAGCACAACAGCAGCAGTATAATGTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3065</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>327077</contig_pos>
        <strand>+</strand>
        <context>ATTACAAAAA[A/T]TATGTATATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCACAACAGCAGCAGTATAATGTATGTTGATTTCAAATTAATTACAAAAA</left_flank>
        <right_flank>TATGTATATTTTTCCAGTGTCAAACATCTGGAATCAACCTCATCGGACTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACACTTGATTCGTCATTTCTGTTTTGATTTTTGTTCTGTTCGCCGGATCCAACATGGCCATTTCACCTGAATTTTACACTAACAATTAGTCTACTTACCTACATAACAGGTTATCAAGTAGTGAAAAAAGAGGCCGATCAAGTTCAATTTTCAAATTCTATATATAAAAACATATGAAAGACAGTTGAAACATCCTGTCTATAAGACATATCGAAATAATGGAGACCCGACTTGTTATAGTTTTATTGTTCCTGGTTTCGATAGCGTCAGCTGGATTGATTCAAGTGAGTTTTTAAATTTCATTATTAGGTTAAAAATAAAAATTGAAAGCTTTCAGAGAAGAGTAAAAAGACAATGGGGAGGCTGGGAAGGAGGTCCAGGAGGATGGCAGCAACCGGGATGGCAGCAGCACAATTGGAACAACAATATGAACAGAAACAAGATAGCAGCACAACAGCAGCAGTATAATGTATGTTGATTTCAAATTAATTACAAAAATTATGTATATTTTTCCAGTGTCAAACATCTGGAATCAACCTCATCGGACTTCCAATTAGCAGTTACAACTGCCAAAATTCAGGAATGTCGGCTCGAGTTAATACTTTACAACAGAGTCAACAAAATCAGGGAATGCTTCAAGGACCGCTTGGAGGAATCGGAGGGTTATTGAACAATTTCATGGGATGAATAAGATCAGATCAATATTTATTTCGAGTTTTTTAATTGTTGCTCATTCCTCTTCGATCTCTTCCCAATGACACAACATCCCGTTTTTGATGTTTGAATTAGTTTAAAATTCGATCGTTAAAGAAGACAAATGCTGAAAATAAATAGTTGTAATATTGAAGACGTTGGCTTGCAATCTTACCTAGGAATAATATTCGTAACGCCATAGGGACCGATGAGCATTCTGGCGTAGTCGAATTCTCGGAAATACTTCAATACTGAATCATAAACAAACGTCTTCTTTAATGGAACATCAAACTAAAAACAGAAATC</canonical>
            <polymorphic>TACACTTGATTCGTCATTTCTGTTTTGATTTTTGTTCTGTTCGCCGGATCCAACATGGCCATTTCACCTGAATTTTACACTAACAATTAGTCTACTTACCTACATAACAGGTTATCAAGTAGTGAAAAAAGAGGCCGATCAAGTTCAATTTTCAAATTCTATATATAAAAACATATGAAAGACAGTTGAAACATCCTGTCTATAAGACATATCGAAATAATGGAGACCCGACTTGTTATAGTTTTATTGTTCCTGGTTTCGATAGCGTCAGCTGGATTGATTCAAGTGAGTTTTTAAATTTCATTATTAGGTTAAAAATAAAAATTGAAAGCTTTCAGAGAAGAGTAAAAAGACAATGGGGAGGCTGGGAAGGAGGTCCAGGAGGATGGCAGCAACCGGGATGGCAGCAGCACAATTGGAACAACAATATGAACAGAAACAAGATAGCAGCACAACAGCAGCAGTATAATGTATGTTGATTTCAAATTAATTACAAAAAWTATGTATATTTTTCCAGTGTCAAACATCTGGAATCAACCTCATCGGACTTCCAATTAGCAGTTACAACTGCCAAAATTCAGGAATGTCGGCTCGAGTTAATACTTTACAACAGAGTCAACAAAATCAGGGAATGCTTCAAGGACCGCTTGGAGGAATCGGAGGGTTATTGAACAATTTCATGGGATGAATAAGATCAGATCAATATTTATTTCGAGTTTTTTAATTGTTGCTCATTCCTCTTCGATCTCTTCCCAATGACACAACATCCCGTTTTTGATGTTTGAATTAGTTTAAAATTCGATCGTTAAAGAAGACAAATGCTGAAAATAAATAGTTGTAATATTGAAGACGTTGGCTTGCAATCTTACCTAGGAATAATATTCGTAACGCCATAGGGACCGATGAGCATTCTGGCGTAGTCGAATTCTCGGAAATACTTCAATACTGAATCATAAACAAACGTCTTCTTTAATGGAACATCAAACTAAAAACAGAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>142 128 99 91 77 71 70 62 62 55 49 26 22 14 11 9 8 4</canonical_bands>
                <polymorphic_bands>142 128 99 91 77 71 70 64 62 62 49 26 22 14 11 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAACAAGATAGCAGCACAA</pcr_primer_p1>
		<pcr_primer_p2>CCATGAAATTGTTCAATAACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGAAACAAGATAGCAGCACAACAGCAGCAGTATAATGTATGTTGATTTCAAATTAATTACAAAAATTATGTATATTTTTCCAGTGTCAAACATCTGGAATCAACCTCATCGGACTTCCAATTAGCAGTTACAACTGCCAAAATTCAGGAATGTCGGCTCGAGTTAATACTTTACAACAGAGTCAACAAAATCAGGGAATGCTTCAAGGACCGCTTGGAGGAATCGGAGGGTTATTGAACAATTTCATGG</canonical_amplicon>
		<polymorphic_amplicon>AGAAACAAGATAGCAGCACAACAGCAGCAGTATAATGTATGTTGATTTCAAATTAATTACAAAAAWTATGTATATTTTTCCAGTGTCAAACATCTGGAATCAACCTCATCGGACTTCCAATTAGCAGTTACAACTGCCAAAATTCAGGAATGTCGGCTCGAGTTAATACTTTACAACAGAGTCAACAAAATCAGGGAATGCTTCAAGGACCGCTTGGAGGAATCGGAGGGTTATTGAACAATTTCATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3066</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>330001</contig_pos>
        <strand>+</strand>
        <context>ATTGAAAGAT[C/T]ATTATTTTGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTTCTTGTATCTGAAAGTTACCATCGAGTTTTCAACCATATTGAAAGAT</left_flank>
        <right_flank>ATTATTTTGCAAAAATCCAGCTACTTTTTTCTAAACGCTGTTTCTCTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTATTGCTCTCTCGATTGTTTGATCTTTCATTACCGAGGAATGATCTTTAAATGATATGAGGAATGATCTTTAAATGATGCATGCATTATTCAGAAGCTTGGTTCAAGTTCCGTCTACCAAATTACGTCCCACGGGACCATCAACTATATAAAATGACCAAAATGAGCTTAAAACATAAATCAGATAAGATTGTTCTTCGATTTTATTATTTTTCGTATCTTTTTTCCTATTCCCAGGAACTGGTTCACCAAATCTAGTACCTCTAGAAAACAAAAAGTCAAAACTCAACAAGAAGATGTTGATTTAGATACTTCCTGTTTTTCTGTTTTTCTTTATATTACACAACCTTATTAATTTCAAAAAAACTTACTCTATTTCGTAGACTCCATCTTCCACATCATAGTTTGCAAAAAATATGAAGGGAAACTTACAATGGTTAGCCAGGAGCGTTCTTGTATCTGAAAGTTACCATCGAGTTTTCAACCATATTGAAAGATCATTATTTTGCAAAAATCCAGCTACTTTTTTCTAAACGCTGTTTCTCTTTTATTAGAAAACTTGATTATATACCTTGCATTGAGTAGGCGTACTCAAACGGGTAACTGGGTCCAACCATCGGGTTGAAATTCGCATTTTTAGTGATACCAACAGTGATCACAATAATTAGAAAAGCAATGAGCAGAAATATAAAACTTGGGAAAAAATGTTGAAAATCTTTTATTCTGAAAGACATAGTAGCCTACTATGGTCAGCTGTGTGTTCTGGATTGAATATAAAAAGGCATCTTCTCTTCATTTGAGATAGCAGTTGCGAACCAGTTTATGTATATGGTCGAGTAATCGACAGATCTAGGAGATTCGATGGAAAGAAACTGTGTAGTAACACGAAGAGAAGTTGATTCGTTAATGAACAAAGTTGAGCATGATGGAAATATGTATGGGAACCACTTGTTGCTTTTTGAGTAAGTTCTCAGCACATTTTGGTGTGAGAAAGGAACG</canonical>
            <polymorphic>ACTATTGCTCTCTCGATTGTTTGATCTTTCATTACCGAGGAATGATCTTTAAATGATATGAGGAATGATCTTTAAATGATGCATGCATTATTCAGAAGCTTGGTTCAAGTTCCGTCTACCAAATTACGTCCCACGGGACCATCAACTATATAAAATGACCAAAATGAGCTTAAAACATAAATCAGATAAGATTGTTCTTCGATTTTATTATTTTTCGTATCTTTTTTCCTATTCCCAGGAACTGGTTCACCAAATCTAGTACCTCTAGAAAACAAAAAGTCAAAACTCAACAAGAAGATGTTGATTTAGATACTTCCTGTTTTTCTGTTTTTCTTTATATTACACAACCTTATTAATTTCAAAAAAACTTACTCTATTTCGTAGACTCCATCTTCCACATCATAGTTTGCAAAAAATATGAAGGGAAACTTACAATGGTTAGCCAGGAGCGTTCTTGTATCTGAAAGTTACCATCGAGTTTTCAACCATATTGAAAGATYATTATTTTGCAAAAATCCAGCTACTTTTTTCTAAACGCTGTTTCTCTTTTATTAGAAAACTTGATTATATACCTTGCATTGAGTAGGCGTACTCAAACGGGTAACTGGGTCCAACCATCGGGTTGAAATTCGCATTTTTAGTGATACCAACAGTGATCACAATAATTAGAAAAGCAATGAGCAGAAATATAAAACTTGGGAAAAAATGTTGAAAATCTTTTATTCTGAAAGACATAGTAGCCTACTATGGTCAGCTGTGTGTTCTGGATTGAATATAAAAAGGCATCTTCTCTTCATTTGAGATAGCAGTTGCGAACCAGTTTATGTATATGGTCGAGTAATCGACAGATCTAGGAGATTCGATGGAAAGAAACTGTGTAGTAACACGAAGAGAAGTTGATTCGTTAATGAACAAAGTTGAGCATGATGGAAATATGTATGGGAACCACTTGTTGCTTTTTGAGTAAGTTCTCAGCACATTTTGGTGTGAGAAAGGAACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>430 193 158 153 23 22 21</canonical_bands>
                <polymorphic_bands>588 193 153 23 22 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCGTTCTTGTATCTGAAAGTTA</pcr_primer_p1>
		<pcr_primer_p2>TTATATTTCTGCTCATTGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGCGTTCTTGTATCTGAAAGTTACCATCGAGTTTTCAACCATATTGAAAGATCATTATTTTGCAAAAATCCAGCTACTTTTTTCTAAACGCTGTTTCTCTTTTATTAGAAAACTTGATTATATACCTTGCATTGAGTAGGCGTACTCAAACGGGTAACTGGGTCCAACCATCGGGTTGAAATTCGCATTTTTAGTGATACCAACAGTGATCACAATAATTAGAAAAGCAATGAGCAGAAATATAA</canonical_amplicon>
		<polymorphic_amplicon>AGCGTTCTTGTATCTGAAAGTTACCATCGAGTTTTCAACCATATTGAAAGATYATTATTTTGCAAAAATCCAGCTACTTTTTTCTAAACGCTGTTTCTCTTTTATTAGAAAACTTGATTATATACCTTGCATTGAGTAGGCGTACTCAAACGGGTAACTGGGTCCAACCATCGGGTTGAAATTCGCATTTTTAGTGATACCAACAGTGATCACAATAATTAGAAAAGCAATGAGCAGAAATATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3067</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>329795</contig_pos>
        <strand>+</strand>
        <context>AACTCAACAA[A/G]AAGATGTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTTCACCAAATCTAGTACCTCTAGAAAACAAAAAGTCAAAACTCAACAA</left_flank>
        <right_flank>AAGATGTTGATTTAGATACTTCCTGTTTTTCTGTTTTTCTTTATATTACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAAGAACACCTTTTGTTGATAAATGCACATATTCATTCAGTTCGTGGGGCACACAATCGTCTTCGGGACTGAAATTTATAATTGGTTTTTTCTTTTCTTTTTTTTCCTTAATCAACTTCTTATCAGATTCAAAGCTGACGTAAATTTAGAATGCACTGTTTGGAAGGAGCACCAAAGGCACACACGAGCTCAAAGTTTTTCAAAAACTATTGCTCTCTCGATTGTTTGATCTTTCATTACCGAGGAATGATCTTTAAATGATATGAGGAATGATCTTTAAATGATGCATGCATTATTCAGAAGCTTGGTTCAAGTTCCGTCTACCAAATTACGTCCCACGGGACCATCAACTATATAAAATGACCAAAATGAGCTTAAAACATAAATCAGATAAGATTGTTCTTCGATTTTATTATTTTTCGTATCTTTTTTCCTATTCCCAGGAACTGGTTCACCAAATCTAGTACCTCTAGAAAACAAAAAGTCAAAACTCAACAAGAAGATGTTGATTTAGATACTTCCTGTTTTTCTGTTTTTCTTTATATTACACAACCTTATTAATTTCAAAAAAACTTACTCTATTTCGTAGACTCCATCTTCCACATCATAGTTTGCAAAAAATATGAAGGGAAACTTACAATGGTTAGCCAGGAGCGTTCTTGTATCTGAAAGTTACCATCGAGTTTTCAACCATATTGAAAGATCATTATTTTGCAAAAATCCAGCTACTTTTTTCTAAACGCTGTTTCTCTTTTATTAGAAAACTTGATTATATACCTTGCATTGAGTAGGCGTACTCAAACGGGTAACTGGGTCCAACCATCGGGTTGAAATTCGCATTTTTAGTGATACCAACAGTGATCACAATAATTAGAAAAGCAATGAGCAGAAATATAAAACTTGGGAAAAAATGTTGAAAATCTTTTATTCTGAAAGACATAGTAGCCTACTATGGTCAGCTGTGTGTTCTGGATTGAATATAAAAAGGCATCTTCTCTT</canonical>
            <polymorphic>GTAAGAACACCTTTTGTTGATAAATGCACATATTCATTCAGTTCGTGGGGCACACAATCGTCTTCGGGACTGAAATTTATAATTGGTTTTTTCTTTTCTTTTTTTTCCTTAATCAACTTCTTATCAGATTCAAAGCTGACGTAAATTTAGAATGCACTGTTTGGAAGGAGCACCAAAGGCACACACGAGCTCAAAGTTTTTCAAAAACTATTGCTCTCTCGATTGTTTGATCTTTCATTACCGAGGAATGATCTTTAAATGATATGAGGAATGATCTTTAAATGATGCATGCATTATTCAGAAGCTTGGTTCAAGTTCCGTCTACCAAATTACGTCCCACGGGACCATCAACTATATAAAATGACCAAAATGAGCTTAAAACATAAATCAGATAAGATTGTTCTTCGATTTTATTATTTTTCGTATCTTTTTTCCTATTCCCAGGAACTGGTTCACCAAATCTAGTACCTCTAGAAAACAAAAAGTCAAAACTCAACAARAAGATGTTGATTTAGATACTTCCTGTTTTTCTGTTTTTCTTTATATTACACAACCTTATTAATTTCAAAAAAACTTACTCTATTTCGTAGACTCCATCTTCCACATCATAGTTTGCAAAAAATATGAAGGGAAACTTACAATGGTTAGCCAGGAGCGTTCTTGTATCTGAAAGTTACCATCGAGTTTTCAACCATATTGAAAGATCATTATTTTGCAAAAATCCAGCTACTTTTTTCTAAACGCTGTTTCTCTTTTATTAGAAAACTTGATTATATACCTTGCATTGAGTAGGCGTACTCAAACGGGTAACTGGGTCCAACCATCGGGTTGAAATTCGCATTTTTAGTGATACCAACAGTGATCACAATAATTAGAAAAGCAATGAGCAGAAATATAAAACTTGGGAAAAAATGTTGAAAATCTTTTATTCTGAAAGACATAGTAGCCTACTATGGTCAGCTGTGTGTTCTGGATTGAATATAAAAAGGCATCTTCTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCAAAATGAGCTTAAAACATA</pcr_primer_p1>
		<pcr_primer_p2>ACTATGATGTGGAAGATGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACCAAAATGAGCTTAAAACATAAATCAGATAAGATTGTTCTTCGATTTTATTATTTTTCGTATCTTTTTTCCTATTCCCAGGAACTGGTTCACCAAATCTAGTACCTCTAGAAAACAAAAAGTCAAAACTCAACAAGAAGATGTTGATTTAGATACTTCCTGTTTTTCTGTTTTTCTTTATATTACACAACCTTATTAATTTCAAAAAAACTTACTCTATTTCGTAGACTCCATCTTCCACATCATAGT</canonical_amplicon>
		<polymorphic_amplicon>GACCAAAATGAGCTTAAAACATAAATCAGATAAGATTGTTCTTCGATTTTATTATTTTTCGTATCTTTTTTCCTATTCCCAGGAACTGGTTCACCAAATCTAGTACCTCTAGAAAACAAAAAGTCAAAACTCAACAARAAGATGTTGATTTAGATACTTCCTGTTTTTCTGTTTTTCTTTATATTACACAACCTTATTAATTTCAAAAAAACTTACTCTATTTCGTAGACTCCATCTTCCACATCATAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3069</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>329630</contig_pos>
        <strand>+</strand>
        <context>CCAAATTACG[C/T]CCCACGGGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGCATGCATTATTCAGAAGCTTGGTTCAAGTTCCGTCTACCAAATTACG</left_flank>
        <right_flank>CCCACGGGACCATCAACTATATAAAATGACCAAAATGAGCTTAAAACATA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTAGATTGTTTACCACTACACTCACCTCAAAATATCTCTCTGATACTCCACTATGCTTATAATATGTGCACCTAAAATCAGATTGATCTTTTATTTTTCCAGAAGTCACGTTAGCATACCTAATTGATTTCAAAGTGGAATTGGTTTCCACTTTTGATCGAAATGTAAGAACACCTTTTGTTGATAAATGCACATATTCATTCAGTTCGTGGGGCACACAATCGTCTTCGGGACTGAAATTTATAATTGGTTTTTTCTTTTCTTTTTTTTCCTTAATCAACTTCTTATCAGATTCAAAGCTGACGTAAATTTAGAATGCACTGTTTGGAAGGAGCACCAAAGGCACACACGAGCTCAAAGTTTTTCAAAAACTATTGCTCTCTCGATTGTTTGATCTTTCATTACCGAGGAATGATCTTTAAATGATATGAGGAATGATCTTTAAATGATGCATGCATTATTCAGAAGCTTGGTTCAAGTTCCGTCTACCAAATTACGTCCCACGGGACCATCAACTATATAAAATGACCAAAATGAGCTTAAAACATAAATCAGATAAGATTGTTCTTCGATTTTATTATTTTTCGTATCTTTTTTCCTATTCCCAGGAACTGGTTCACCAAATCTAGTACCTCTAGAAAACAAAAAGTCAAAACTCAACAAGAAGATGTTGATTTAGATACTTCCTGTTTTTCTGTTTTTCTTTATATTACACAACCTTATTAATTTCAAAAAAACTTACTCTATTTCGTAGACTCCATCTTCCACATCATAGTTTGCAAAAAATATGAAGGGAAACTTACAATGGTTAGCCAGGAGCGTTCTTGTATCTGAAAGTTACCATCGAGTTTTCAACCATATTGAAAGATCATTATTTTGCAAAAATCCAGCTACTTTTTTCTAAACGCTGTTTCTCTTTTATTAGAAAACTTGATTATATACCTTGCATTGAGTAGGCGTACTCAAACGGGTAACTGGGTCCAACCATCGGGTTGAAAT</canonical>
            <polymorphic>TCTAGATTGTTTACCACTACACTCACCTCAAAATATCTCTCTGATACTCCACTATGCTTATAATATGTGCACCTAAAATCAGATTGATCTTTTATTTTTCCAGAAGTCACGTTAGCATACCTAATTGATTTCAAAGTGGAATTGGTTTCCACTTTTGATCGAAATGTAAGAACACCTTTTGTTGATAAATGCACATATTCATTCAGTTCGTGGGGCACACAATCGTCTTCGGGACTGAAATTTATAATTGGTTTTTTCTTTTCTTTTTTTTCCTTAATCAACTTCTTATCAGATTCAAAGCTGACGTAAATTTAGAATGCACTGTTTGGAAGGAGCACCAAAGGCACACACGAGCTCAAAGTTTTTCAAAAACTATTGCTCTCTCGATTGTTTGATCTTTCATTACCGAGGAATGATCTTTAAATGATATGAGGAATGATCTTTAAATGATGCATGCATTATTCAGAAGCTTGGTTCAAGTTCCGTCTACCAAATTACGYCCCACGGGACCATCAACTATATAAAATGACCAAAATGAGCTTAAAACATAAATCAGATAAGATTGTTCTTCGATTTTATTATTTTTCGTATCTTTTTTCCTATTCCCAGGAACTGGTTCACCAAATCTAGTACCTCTAGAAAACAAAAAGTCAAAACTCAACAAGAAGATGTTGATTTAGATACTTCCTGTTTTTCTGTTTTTCTTTATATTACACAACCTTATTAATTTCAAAAAAACTTACTCTATTTCGTAGACTCCATCTTCCACATCATAGTTTGCAAAAAATATGAAGGGAAACTTACAATGGTTAGCCAGGAGCGTTCTTGTATCTGAAAGTTACCATCGAGTTTTCAACCATATTGAAAGATCATTATTTTGCAAAAATCCAGCTACTTTTTTCTAAACGCTGTTTCTCTTTTATTAGAAAACTTGATTATATACCTTGCATTGAGTAGGCGTACTCAAACGGGTAACTGGGTCCAACCATCGGGTTGAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>503 195 193 109</canonical_bands>
                <polymorphic_bands>696 195 109</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTAAATTTAGAATGCACTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TGATTTATGTTTTAAGCTCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CGTAAATTTAGAATGCACTGTTTGGAAGGAGCACCAAAGGCACACACGAGCTCAAAGTTTTTCAAAAACTATTGCTCTCTCGATTGTTTGATCTTTCATTACCGAGGAATGATCTTTAAATGATATGAGGAATGATCTTTAAATGATGCATGCATTATTCAGAAGCTTGGTTCAAGTTCCGTCTACCAAATTACGTCCCACGGGACCATCAACTATATAAAATGACCAAAATGAGCTTAAAACATAAATCA</canonical_amplicon>
		<polymorphic_amplicon>CGTAAATTTAGAATGCACTGTTTGGAAGGAGCACCAAAGGCACACACGAGCTCAAAGTTTTTCAAAAACTATTGCTCTCTCGATTGTTTGATCTTTCATTACCGAGGAATGATCTTTAAATGATATGAGGAATGATCTTTAAATGATGCATGCATTATTCAGAAGCTTGGTTCAAGTTCCGTCTACCAAATTACGYCCCACGGGACCATCAACTATATAAAATGACCAAAATGAGCTTAAAACATAAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3070</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>533140</contig_pos>
        <strand>+</strand>
        <context>TTGTYCATTT[C/T]AATGCTTCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTCTCAATCTCTAATAGTTAAAAAGTATTTTAAACTGTTGTCCATTT</left_flank>
        <right_flank>AATGCTTCATAAATGTTTTATCTTTTTCCATTCATCATCCGTTTCCGGCT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATCAGGTCTCAAAACCAGAGCTACAGTAACCTAAAAGTTAAAATTGAAAAAATCGAGAAAAAAAACCTCTTGAAAGTAGTATTTTTTCAGGTTACAGCTAACGTATTCCCTGTAAATGAAGCTCACCCAAACCGTCAAATTTGAGCTCAATTATCTCGCTTTCCGTGAAAGATATCAGAATTTTTTCAACAAATCAACTTTTCAAAATTTCTCACAGGAAACGCGACAATTGAGCTCAAAGTTAACTGCGTGGGTGGACTTCTATTAAAGCAAATAAGTCGTTTTTGGTTCTAACGAGCCCTTTTCTTCCACAACTACAACTAGTTTGCCTTTTGTCTTCTATACTTCTCATTTTTAGATCACTTTGTTTTGCAATTCTTACTTCTAGATTTTTTGATGTTGTGACAAATCAGCTGATCAACAAATCGAATTCGCAAGTTCAACTTCATTTTCTCAATCTCTAATAGTTAAAAAGTATTTTAAACTGTTGTCCATTTTAATGCTTCATAAATGTTTTATCTTTTTCCATTCATCATCCGTTTCCGGCTACTGAAGAATGCTCTTCAGCTGGTTAAGAATTCAACTGATAACCTCTAAAAATGAGTCAAATGCATTCCAATTCTCCTCACACCCCTCTTCCATATGTTTGGCATTATAAGAGAAAAGACAGAAAGGAGATGCCGAAGAGACTGCGAGACGCCAAAACACACTGTAATCAATCTTCTCACCTTTCACGCCAATCATCCTCTCGATCATCATCAGTTCAGTATCTATTCAACACTTTCAAACTGTTTTTTTTTCTCTTTCTTTTCAAATAAGAATTTCTGAGTGACACAGTAATATTTGGAGCTACTTCAAAAGGAAAATACTGCAATTTTTCTTTGCTGAAAGAAGCATTCCGTTCCAGTCGTTCTCTCTTCAATCATAACCTCTTTTTTCATTTTCTATCTTTCTTTTTCTCAATCTGAAATTCAGTTCTTTTTTCTTACACACTAATA</canonical>
            <polymorphic>GTATCAGGTCTCAAAACCAGAGCTACAGTAACCTAAAAGTTAAAATTGAAAAAATCGAGAAAAAAAACCTCTTGAAAGTAGTATTTTTTCAGGTTACAGCTAACGTATTCCCTGTAAATGAAGCTCACCCAAACCGTCAAATTTGAGCTCAATTATCTCGCTTTCCGTGAAAGATATCAGAATTTTTTCAACAAATCAACTTTTCAAAATTTCTCACAGGAAACGCGACAATTGAGCTCAAAGTTAACTGCGTGGGTGGACTTCTATTAAAGCAAATAAGTCGTTTTTGGTTCTAACGAGCCCTTTTCTTCCACAACTACAACTAGTTTGCCTTTTGTCTTCTATACTTCTCATTTTTAGATCACTTTGTTTTGCAATTCTTACTTCTAGATTTTTTGATGTTGTGACAAATCAGCTGATCAACAAATCGAATTCGCAAGTTCAACTTCATTTTCTCAATCTCTAATAGTTAAAAAGTATTTTAAACTGTTGTCCATTTYAATGCTTCATAAATGTTTTATCTTTTTCCATTCATCATCCGTTTCCGGCTACTGAAGAATGCTCTTCAGCTGGTTAAGAATTCAACTGATAACCTCTAAAAATGAGTCAAATGCATTCCAATTCTCCTCACACCCCTCTTCCATATGTTTGGCATTATAAGAGAAAAGACAGAAAGGAGATGCCGAAGAGACTGCGAGACGCCAAAACACACTGTAATCAATCTTCTCACCTTTCACGCCAATCATCCTCTCGATCATCATCAGTTCAGTATCTATTCAACACTTTCAAACTGTTTTTTTTTCTCTTTCTTTTCAAATAAGAATTTCTGAGTGACACAGTAATATTTGGAGCTACTTCAAAAGGAAAATACTGCAATTTTTCTTTGCTGAAAGAAGCATTCCGTTCCAGTCGTTCTCTCTTCAATCATAACCTCTTTTTTCATTTTCTATCTTTCTTTTTCTCAATCTGAAATTCAGTTCTTTTTTCTTACACACTAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>426 204 203 75 40 23 17 12</canonical_bands>
                <polymorphic_bands>426 204 203 92 40 23 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGTTTTGCAATTCTTACTTCT</pcr_primer_p1>
		<pcr_primer_p2>ATGCATTTGACTCATTTTTAGAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTGTTTTGCAATTCTTACTTCTAGATTTTTTGATGTTGTGACAAATCAGCTGATCAACAAATCGAATTCGCAAGTTCAACTTCATTTTCTCAATCTCTAATAGTTAAAAAGTATTTTAAACTGTTGTCCATTTTAATGCTTCATAAATGTTTTATCTTTTTCCATTCATCATCCGTTTCCGGCTACTGAAGAATGCTCTTCAGCTGGTTAAGAATTCAACTGATAACCTCTAAAAATGAGTCAAATGCAT</canonical_amplicon>
		<polymorphic_amplicon>TTTGTTTTGCAATTCTTACTTCTAGATTTTTTGATGTTGTGACAAATCAGCTGATCAACAAATCGAATTCGCAAGTTCAACTTCATTTTCTCAATCTCTAATAGTTAAAAAGTATTTTAAACTGTTGTCCATTTYAATGCTTCATAAATGTTTTATCTTTTTCCATTCATCATCCGTTTCCGGCTACTGAAGAATGCTCTTCAGCTGGTTAAGAATTCAACTGATAACCTCTAAAAATGAGTCAAATGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3071</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>533134</contig_pos>
        <strand>+</strand>
        <context>AAACTGTTGT[C/T]CATTTYAATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACTTCATTTTCTCAATCTCTAATAGTTAAAAAGTATTTTAAACTGTTGT</left_flank>
        <right_flank>CATTTTAATGCTTCATAAATGTTTTATCTTTTTCCATTCATCATCCGTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCGTGGTATCAGGTCTCAAAACCAGAGCTACAGTAACCTAAAAGTTAAAATTGAAAAAATCGAGAAAAAAAACCTCTTGAAAGTAGTATTTTTTCAGGTTACAGCTAACGTATTCCCTGTAAATGAAGCTCACCCAAACCGTCAAATTTGAGCTCAATTATCTCGCTTTCCGTGAAAGATATCAGAATTTTTTCAACAAATCAACTTTTCAAAATTTCTCACAGGAAACGCGACAATTGAGCTCAAAGTTAACTGCGTGGGTGGACTTCTATTAAAGCAAATAAGTCGTTTTTGGTTCTAACGAGCCCTTTTCTTCCACAACTACAACTAGTTTGCCTTTTGTCTTCTATACTTCTCATTTTTAGATCACTTTGTTTTGCAATTCTTACTTCTAGATTTTTTGATGTTGTGACAAATCAGCTGATCAACAAATCGAATTCGCAAGTTCAACTTCATTTTCTCAATCTCTAATAGTTAAAAAGTATTTTAAACTGTTGTCCATTTTAATGCTTCATAAATGTTTTATCTTTTTCCATTCATCATCCGTTTCCGGCTACTGAAGAATGCTCTTCAGCTGGTTAAGAATTCAACTGATAACCTCTAAAAATGAGTCAAATGCATTCCAATTCTCCTCACACCCCTCTTCCATATGTTTGGCATTATAAGAGAAAAGACAGAAAGGAGATGCCGAAGAGACTGCGAGACGCCAAAACACACTGTAATCAATCTTCTCACCTTTCACGCCAATCATCCTCTCGATCATCATCAGTTCAGTATCTATTCAACACTTTCAAACTGTTTTTTTTTCTCTTTCTTTTCAAATAAGAATTTCTGAGTGACACAGTAATATTTGGAGCTACTTCAAAAGGAAAATACTGCAATTTTTCTTTGCTGAAAGAAGCATTCCGTTCCAGTCGTTCTCTCTTCAATCATAACCTCTTTTTTCATTTTCTATCTTTCTTTTTCTCAATCTGAAATTCAGTTCTTTTTTCTTACACA</canonical>
            <polymorphic>ACCGTGGTATCAGGTCTCAAAACCAGAGCTACAGTAACCTAAAAGTTAAAATTGAAAAAATCGAGAAAAAAAACCTCTTGAAAGTAGTATTTTTTCAGGTTACAGCTAACGTATTCCCTGTAAATGAAGCTCACCCAAACCGTCAAATTTGAGCTCAATTATCTCGCTTTCCGTGAAAGATATCAGAATTTTTTCAACAAATCAACTTTTCAAAATTTCTCACAGGAAACGCGACAATTGAGCTCAAAGTTAACTGCGTGGGTGGACTTCTATTAAAGCAAATAAGTCGTTTTTGGTTCTAACGAGCCCTTTTCTTCCACAACTACAACTAGTTTGCCTTTTGTCTTCTATACTTCTCATTTTTAGATCACTTTGTTTTGCAATTCTTACTTCTAGATTTTTTGATGTTGTGACAAATCAGCTGATCAACAAATCGAATTCGCAAGTTCAACTTCATTTTCTCAATCTCTAATAGTTAAAAAGTATTTTAAACTGTTGTYCATTTTAATGCTTCATAAATGTTTTATCTTTTTCCATTCATCATCCGTTTCCGGCTACTGAAGAATGCTCTTCAGCTGGTTAAGAATTCAACTGATAACCTCTAAAAATGAGTCAAATGCATTCCAATTCTCCTCACACCCCTCTTCCATATGTTTGGCATTATAAGAGAAAAGACAGAAAGGAGATGCCGAAGAGACTGCGAGACGCCAAAACACACTGTAATCAATCTTCTCACCTTTCACGCCAATCATCCTCTCGATCATCATCAGTTCAGTATCTATTCAACACTTTCAAACTGTTTTTTTTTCTCTTTCTTTTCAAATAAGAATTTCTGAGTGACACAGTAATATTTGGAGCTACTTCAAAAGGAAAATACTGCAATTTTTCTTTGCTGAAAGAAGCATTCCGTTCCAGTCGTTCTCTCTTCAATCATAACCTCTTTTTTCATTTTCTATCTTTCTTTTTCTCAATCTGAAATTCAGTTCTTTTTTCTTACACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTTTTGCAATTCTTACTTCT</pcr_primer_p1>
		<pcr_primer_p2>ATGCATTTGACTCATTTTTAGAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTGTTTTGCAATTCTTACTTCTAGATTTTTTGATGTTGTGACAAATCAGCTGATCAACAAATCGAATTCGCAAGTTCAACTTCATTTTCTCAATCTCTAATAGTTAAAAAGTATTTTAAACTGTTGTCCATTTTAATGCTTCATAAATGTTTTATCTTTTTCCATTCATCATCCGTTTCCGGCTACTGAAGAATGCTCTTCAGCTGGTTAAGAATTCAACTGATAACCTCTAAAAATGAGTCAAATGCAT</canonical_amplicon>
		<polymorphic_amplicon>TTTGTTTTGCAATTCTTACTTCTAGATTTTTTGATGTTGTGACAAATCAGCTGATCAACAAATCGAATTCGCAAGTTCAACTTCATTTTCTCAATCTCTAATAGTTAAAAAGTATTTTAAACTGTTGTYCATTTTAATGCTTCATAAATGTTTTATCTTTTTCCATTCATCATCCGTTTCCGGCTACTGAAGAATGCTCTTCAGCTGGTTAAGAATTCAACTGATAACCTCTAAAAATGAGTCAAATGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3072</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>533095</contig_pos>
        <strand>+</strand>
        <context>ACTTCATTTT[C/T]TCAATCTCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGACAAATCAGCTGATCAACAAATCGAATTCGCAAGTTCAACTTCATTTT</left_flank>
        <right_flank>TCAATCTCTAATAGTTAAAAAGTATTTTAAACTGTTGTCCATTTTAATGC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTGAAATATAGAGTTGTGCAAAAAAAAGATACATGTGACCGTGGTATCAGGTCTCAAAACCAGAGCTACAGTAACCTAAAAGTTAAAATTGAAAAAATCGAGAAAAAAAACCTCTTGAAAGTAGTATTTTTTCAGGTTACAGCTAACGTATTCCCTGTAAATGAAGCTCACCCAAACCGTCAAATTTGAGCTCAATTATCTCGCTTTCCGTGAAAGATATCAGAATTTTTTCAACAAATCAACTTTTCAAAATTTCTCACAGGAAACGCGACAATTGAGCTCAAAGTTAACTGCGTGGGTGGACTTCTATTAAAGCAAATAAGTCGTTTTTGGTTCTAACGAGCCCTTTTCTTCCACAACTACAACTAGTTTGCCTTTTGTCTTCTATACTTCTCATTTTTAGATCACTTTGTTTTGCAATTCTTACTTCTAGATTTTTTGATGTTGTGACAAATCAGCTGATCAACAAATCGAATTCGCAAGTTCAACTTCATTTTCTCAATCTCTAATAGTTAAAAAGTATTTTAAACTGTTGTCCATTTTAATGCTTCATAAATGTTTTATCTTTTTCCATTCATCATCCGTTTCCGGCTACTGAAGAATGCTCTTCAGCTGGTTAAGAATTCAACTGATAACCTCTAAAAATGAGTCAAATGCATTCCAATTCTCCTCACACCCCTCTTCCATATGTTTGGCATTATAAGAGAAAAGACAGAAAGGAGATGCCGAAGAGACTGCGAGACGCCAAAACACACTGTAATCAATCTTCTCACCTTTCACGCCAATCATCCTCTCGATCATCATCAGTTCAGTATCTATTCAACACTTTCAAACTGTTTTTTTTTCTCTTTCTTTTCAAATAAGAATTTCTGAGTGACACAGTAATATTTGGAGCTACTTCAAAAGGAAAATACTGCAATTTTTCTTTGCTGAAAGAAGCATTCCGTTCCAGTCGTTCTCTCTTCAATCATAACCTCTTTTTTCATTTTCTATCTTTC</canonical>
            <polymorphic>AACTGAAATATAGAGTTGTGCAAAAAAAAGATACATGTGACCGTGGTATCAGGTCTCAAAACCAGAGCTACAGTAACCTAAAAGTTAAAATTGAAAAAATCGAGAAAAAAAACCTCTTGAAAGTAGTATTTTTTCAGGTTACAGCTAACGTATTCCCTGTAAATGAAGCTCACCCAAACCGTCAAATTTGAGCTCAATTATCTCGCTTTCCGTGAAAGATATCAGAATTTTTTCAACAAATCAACTTTTCAAAATTTCTCACAGGAAACGCGACAATTGAGCTCAAAGTTAACTGCGTGGGTGGACTTCTATTAAAGCAAATAAGTCGTTTTTGGTTCTAACGAGCCCTTTTCTTCCACAACTACAACTAGTTTGCCTTTTGTCTTCTATACTTCTCATTTTTAGATCACTTTGTTTTGCAATTCTTACTTCTAGATTTTTTGATGTTGTGACAAATCAGCTGATCAACAAATCGAATTCGCAAGTTCAACTTCATTTTYTCAATCTCTAATAGTTAAAAAGTATTTTAAACTGTTGTCCATTTTAATGCTTCATAAATGTTTTATCTTTTTCCATTCATCATCCGTTTCCGGCTACTGAAGAATGCTCTTCAGCTGGTTAAGAATTCAACTGATAACCTCTAAAAATGAGTCAAATGCATTCCAATTCTCCTCACACCCCTCTTCCATATGTTTGGCATTATAAGAGAAAAGACAGAAAGGAGATGCCGAAGAGACTGCGAGACGCCAAAACACACTGTAATCAATCTTCTCACCTTTCACGCCAATCATCCTCTCGATCATCATCAGTTCAGTATCTATTCAACACTTTCAAACTGTTTTTTTTTCTCTTTCTTTTCAAATAAGAATTTCTGAGTGACACAGTAATATTTGGAGCTACTTCAAAAGGAAAATACTGCAATTTTTCTTTGCTGAAAGAAGCATTCCGTTCCAGTCGTTCTCTCTTCAATCATAACCTCTTTTTTCATTTTCTATCTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTTTTGCAATTCTTACTTCT</pcr_primer_p1>
		<pcr_primer_p2>ATGCATTTGACTCATTTTTAGAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTGTTTTGCAATTCTTACTTCTAGATTTTTTGATGTTGTGACAAATCAGCTGATCAACAAATCGAATTCGCAAGTTCAACTTCATTTTCTCAATCTCTAATAGTTAAAAAGTATTTTAAACTGTTGTCCATTTTAATGCTTCATAAATGTTTTATCTTTTTCCATTCATCATCCGTTTCCGGCTACTGAAGAATGCTCTTCAGCTGGTTAAGAATTCAACTGATAACCTCTAAAAATGAGTCAAATGCAT</canonical_amplicon>
		<polymorphic_amplicon>TTTGTTTTGCAATTCTTACTTCTAGATTTTTTGATGTTGTGACAAATCAGCTGATCAACAAATCGAATTCGCAAGTTCAACTTCATTTTYTCAATCTCTAATAGTTAAAAAGTATTTTAAACTGTTGTCCATTTTAATGCTTCATAAATGTTTTATCTTTTTCCATTCATCATCCGTTTCCGGCTACTGAAGAATGCTCTTCAGCTGGTTAAGAATTCAACTGATAACCTCTAAAAATGAGTCAAATGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3073</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>578372</contig_pos>
        <strand>+</strand>
        <context>CAACTTGAGA[C/G]TGATCTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTCGATTGTGAACTTTGTGTGATGCATTCAGTGTATTTTCAACTTGAGA</left_flank>
        <right_flank>TGATCTTTTTCAAATTTTAAAGTTTTATTCATCATAATATCGTCCTCTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGTGTTCTTTGAAATTCAAAAGAAAAAAAATTCGAACGTTTTAATAAAATCTGTTCCGGATATTCCTCAATTTCATAGAAACGAAACTCAAAAAATGCTCAATTTTTGTGAAATTGATAGATTTTCATGAATTTTTTGAATGAGAATTCACCGATTTTTGAATGAAAATTTTCGGAGATGCTGGCCGGAAAAATAGAAAGACCCCCTCTAATTGAAGAGCCCCGAAGTTACCTTGGAACTATAGAAGCCCTTCTAATACAGGATTTACGGTAAATGAAGTCGATAAAACAGTGATTCTCAAGACAACCTCTGATGCGTATTGATCAGTTAGTTAAAAGAATGAAAAAAAACCAACTCGAAATTCTTTTTCATAACCTTTCCATTACAGGTTTTTTCTCCTTCATCAAACTGTAGGCGGATTGCTTTAATCCCTCTATCTCTCCATTATTTCGATTGTGAACTTTGTGTGATGCATTCAGTGTATTTTCAACTTGAGACTGATCTTTTTCAAATTTTAAAGTTTTATTCATCATAATATCGTCCTCTTCAGTGAGCATAAAAAACAAATTGATATATAGAATTCGATCATAGAAACACAACCAGTTCAATGAGCTATTCTAATCGATTTTTGTCTATAATTAATAAAAATTTCAAGACTTTCTAAAATTATAAGAAGTAGACGCCTGTGAAACTTTGACCATCGGGATTCCATGAGCGTTGCTCGTTCCTGGAGTTCTACTTGTAGCCACATATTGACGAGATCGCTGTTTCTCTTCAGAACAACTTCCACACAATCCCGCGCATACAAAAGCTACCAAAATTACACAAAGAACTCCCCTGTAAAATGAAAATATATTCCATATTTATAAAAGTCAAACTCACATTGCAACATACTCTCCCGTATTATGGCAACAATACATTCCACAACAGTCGACCATTGGGCCAGGACATCCGAAGAAAAGAGATCTTGCGGATGTACCATTTGCATATGTTACCTA</canonical>
            <polymorphic>AATGTGTTCTTTGAAATTCAAAAGAAAAAAAATTCGAACGTTTTAATAAAATCTGTTCCGGATATTCCTCAATTTCATAGAAACGAAACTCAAAAAATGCTCAATTTTTGTGAAATTGATAGATTTTCATGAATTTTTTGAATGAGAATTCACCGATTTTTGAATGAAAATTTTCGGAGATGCTGGCCGGAAAAATAGAAAGACCCCCTCTAATTGAAGAGCCCCGAAGTTACCTTGGAACTATAGAAGCCCTTCTAATACAGGATTTACGGTAAATGAAGTCGATAAAACAGTGATTCTCAAGACAACCTCTGATGCGTATTGATCAGTTAGTTAAAAGAATGAAAAAAAACCAACTCGAAATTCTTTTTCATAACCTTTCCATTACAGGTTTTTTCTCCTTCATCAAACTGTAGGCGGATTGCTTTAATCCCTCTATCTCTCCATTATTTCGATTGTGAACTTTGTGTGATGCATTCAGTGTATTTTCAACTTGAGASTGATCTTTTTCAAATTTTAAAGTTTTATTCATCATAATATCGTCCTCTTCAGTGAGCATAAAAAACAAATTGATATATAGAATTCGATCATAGAAACACAACCAGTTCAATGAGCTATTCTAATCGATTTTTGTCTATAATTAATAAAAATTTCAAGACTTTCTAAAATTATAAGAAGTAGACGCCTGTGAAACTTTGACCATCGGGATTCCATGAGCGTTGCTCGTTCCTGGAGTTCTACTTGTAGCCACATATTGACGAGATCGCTGTTTCTCTTCAGAACAACTTCCACACAATCCCGCGCATACAAAAGCTACCAAAATTACACAAAGAACTCCCCTGTAAAATGAAAATATATTCCATATTTATAAAAGTCAAACTCACATTGCAACATACTCTCCCGTATTATGGCAACAATACATTCCACAACAGTCGACCATTGGGCCAGGACATCCGAAGAAAAGAGATCTTGCGGATGTACCATTTGCATATGTTACCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTTCATAACCTTTCCATTA</pcr_primer_p1>
		<pcr_primer_p2>CATTGAACTGGTTGTGTTTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTTCATAACCTTTCCATTACAGGTTTTTTCTCCTTCATCAAACTGTAGGCGGATTGCTTTAATCCCTCTATCTCTCCATTATTTCGATTGTGAACTTTGTGTGATGCATTCAGTGTATTTTCAACTTGAGACTGATCTTTTTCAAATTTTAAAGTTTTATTCATCATAATATCGTCCTCTTCAGTGAGCATAAAAAACAAATTGATATATAGAATTCGATCATAGAAACACAACCAGTTCAATG</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTTCATAACCTTTCCATTACAGGTTTTTTCTCCTTCATCAAACTGTAGGCGGATTGCTTTAATCCCTCTATCTCTCCATTATTTCGATTGTGAACTTTGTGTGATGCATTCAGTGTATTTTCAACTTGAGASTGATCTTTTTCAAATTTTAAAGTTTTATTCATCATAATATCGTCCTCTTCAGTGAGCATAAAAAACAAATTGATATATAGAATTCGATCATAGAAACACAACCAGTTCAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3118</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>636755</contig_pos>
        <strand>+</strand>
        <context>TATTTGTATC[A/C]GCTGATTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTTCAGATAAGAGTGTGCTATATTATGACACCAATCACTATTTGTATC</left_flank>
        <right_flank>GCTGATTTCTATAAATCTATTTGATTGTTTTATAATACTTTGTACAACAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTGTATTTTTATTTTCAGTGTAAAGTATTTGAATCCAGCAATCATTTTACTCTCATATTTTACTTCTGCACTGCGGTAGTCATTCTTGGGAGCTTGTTGTATACTGTCACCACATTTACCCTACTGTATTTCAAAAGTATCAGACACATCTTCTTGATTATGTTTCTTTTTATTCAAATGGCGTTGAAGTTTTGCGCTCCTTTCATCTCACCAGTTATCACCACAATGACATTTCTTTACTCTTTCTCTTTTGTTTTTCAGAGAACTGAAACTTTGAAAACAGCATTTCAATCGAAAACTGGGTAGATTAATACAACCCAATACACTATTTAAAATGTCAAATTCAGATCTCGAACCATTTGGATAATATCTTCAGTGTATGGGTTGTGGGTCCACCCTTTTAATAGCCACAGTGAGTATTCATCTTAATAAAGCATAACTATTCAAAATTTCAGATAAGAGTGTGCTATATTATGACACCAATCACTATTTGTATCAGCTGATTTCTATAAATCTATTTGATTGTTTTATAATACTTTGTACAACAATACTGGTTGGTATCAAACTTTTGAATGTTTACAAACACCCGAAACATCTTTCAAATTATGAAATTGCAAGTTTAATTCATGTTACTGTAATATTATTCTTTCAACACGTTGGTCTTCAGGAAACATTCTCAAAATGAGACTATTTTAATTTCAGATTTTATTTATATTCAACCTAGTTATGCTAAATAGCTCTAATGTGGAAAGATTGGAAAGTTTGAAAAACGTTCTTATGGAAAAACGCGGCACCTGGCAAATTTTTTGCATATTTGGCCCATTTTCTTATCCATATTCAATTCTGTCCAGTGCGATGTTTTCAGGGCCTAAAACGGATTTTCATACAATGAGATCTGTTACTTTTGATGCCAGAAGAATGAGAAGCAATTGAATTTTTATTAACACAAATGAGAAAAATCATTTGAAAGTTTTGGAGAACGAGATTAATTGAAGCTG</canonical>
            <polymorphic>TGTTGTATTTTTATTTTCAGTGTAAAGTATTTGAATCCAGCAATCATTTTACTCTCATATTTTACTTCTGCACTGCGGTAGTCATTCTTGGGAGCTTGTTGTATACTGTCACCACATTTACCCTACTGTATTTCAAAAGTATCAGACACATCTTCTTGATTATGTTTCTTTTTATTCAAATGGCGTTGAAGTTTTGCGCTCCTTTCATCTCACCAGTTATCACCACAATGACATTTCTTTACTCTTTCTCTTTTGTTTTTCAGAGAACTGAAACTTTGAAAACAGCATTTCAATCGAAAACTGGGTAGATTAATACAACCCAATACACTATTTAAAATGTCAAATTCAGATCTCGAACCATTTGGATAATATCTTCAGTGTATGGGTTGTGGGTCCACCCTTTTAATAGCCACAGTGAGTATTCATCTTAATAAAGCATAACTATTCAAAATTTCAGATAAGAGTGTGCTATATTATGACACCAATCACTATTTGTATCMGCTGATTTCTATAAATCTATTTGATTGTTTTATAATACTTTGTACAACAATACTGGTTGGTATCAAACTTTTGAATGTTTACAAACACCCGAAACATCTTTCAAATTATGAAATTGCAAGTTTAATTCATGTTACTGTAATATTATTCTTTCAACACGTTGGTCTTCAGGAAACATTCTCAAAATGAGACTATTTTAATTTCAGATTTTATTTATATTCAACCTAGTTATGCTAAATAGCTCTAATGTGGAAAGATTGGAAAGTTTGAAAAACGTTCTTATGGAAAAACGCGGCACCTGGCAAATTTTTTGCATATTTGGCCCATTTTCTTATCCATATTCAATTCTGTCCAGTGCGATGTTTTCAGGGCCTAAAACGGATTTTCATACAATGAGATCTGTTACTTTTGATGCCAGAAGAATGAGAAGCAATTGAATTTTTATTAACACAAATGAGAAAAATCATTTGAAAGTTTTGGAGAACGAGATTAATTGAAGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>407 258 238 94 3</canonical_bands>
                <polymorphic_bands>645 258 94 3</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>315 238 128 94 92 81 49 3</canonical_bands>
                <polymorphic_bands>330 315 128 94 81 49 3</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACTATTTAAAATGTCAAATTCAGA</pcr_primer_p1>
		<pcr_primer_p2>CAAAAGTTTGATACCAACCAGTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CACTATTTAAAATGTCAAATTCAGATCTCGAACCATTTGGATAATATCTTCAGTGTATGGGTTGTGGGTCCACCCTTTTAATAGCCACAGTGAGTATTCATCTTAATAAAGCATAACTATTCAAAATTTCAGATAAGAGTGTGCTATATTATGACACCAATCACTATTTGTATCAGCTGATTTCTATAAATCTATTTGATTGTTTTATAATACTTTGTACAACAATACTGGTTGGTATCAAACTTTTG</canonical_amplicon>
		<polymorphic_amplicon>CACTATTTAAAATGTCAAATTCAGATCTCGAACCATTTGGATAATATCTTCAGTGTATGGGTTGTGGGTCCACCCTTTTAATAGCCACAGTGAGTATTCATCTTAATAAAGCATAACTATTCAAAATTTCAGATAAGAGTGTGCTATATTATGACACCAATCACTATTTGTATCMGCTGATTTCTATAAATCTATTTGATTGTTTTATAATACTTTGTACAACAATACTGGTTGGTATCAAACTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3119</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>640782</contig_pos>
        <strand>+</strand>
        <context>AAAATGAAAT[A/C]ATTTAATTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGCGAATCAAATGCCTCACTATTCTTTGTTTGAAAAATTAAAAATGAAAT</left_flank>
        <right_flank>ATTTAATTGTCTGAACGATTTTCAGTGACATGACTCCACAGGAAAAAACT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAGGGGTTACCTCCATTCCTATGCAAGGTATCAAAAATGTGTCAACTAAAAAAATGTTTGTGATATTATGATAAATCATTGATCAGTTGACAACTTTTTAATATCTCTGATGGGAATAGAGATAATTGAACTCAAAGTTAAAAGCCAAGAAGCCCTTGAACTTCATTTAAGTTCCATCAACTCTCTGCGGACCTAATACGTTTTTTTTTCAGGTGCTTGTGTTTCCTTTTATAGTTTTCTTTTAATAATTCTTTTCATAAAACATTCAAATTCATCAAACTCTTCTAGAGGAGGAGATCTTCTTTCACTTCAGCGGCTTGATGTACGGTCCTTCATTGCTTCGTCGTCACCTATAACGCACCTCCCGCAAACACTCTCACGAGATGTTGCGGACATTCAAATCTGAAAATTTTTAGAGTTCAGTTTTCATTAAATTAAATCTTATTCAGCGAATCAAATGCCTCACTATTCTTTGTTTGAAAAATTAAAAATGAAATCATTTAATTGTCTGAACGATTTTCAGTGACATGACTCCACAGGAAAAAACTCCAGAAGTCGATATCGATGATGGGCATGAAGATGGAGAGATATCTGACGATGAAGATGATGCACCAGTTGAACTTCCTTCTAATCAACCTAACAGTGAGTTTCGTTCTCGAATTCTTGAAATTTTTATTGTTTCTGTGTTCAGCGCTGGTCAACTACCCCTCATCGGACGACGAAAAATCTCCAGAAGATGTTATCAGCGCGTACAAGCAGAAAATCGCTGAGCAAAAGAAAGAAGAAGCAGTTCCTGAAGTCTCTGTAGATCCGAAATTGTGCAAAGTCTGCCTGAAAAATGAGCACAAATACAGATGTCCAAGATGTGAGCTACGCACATGCTCACTCGATTGTTCAAAGAAACACAAAGCGGATAACGATGTAAGATGTTTTATTTATGAACAATTATTCAATTTCTCGTTTTAGTGTGATGGTGTGAGGCAAGCATTCACCAAAGT</canonical>
            <polymorphic>AGAAGGGGTTACCTCCATTCCTATGCAAGGTATCAAAAATGTGTCAACTAAAAAAATGTTTGTGATATTATGATAAATCATTGATCAGTTGACAACTTTTTAATATCTCTGATGGGAATAGAGATAATTGAACTCAAAGTTAAAAGCCAAGAAGCCCTTGAACTTCATTTAAGTTCCATCAACTCTCTGCGGACCTAATACGTTTTTTTTTCAGGTGCTTGTGTTTCCTTTTATAGTTTTCTTTTAATAATTCTTTTCATAAAACATTCAAATTCATCAAACTCTTCTAGAGGAGGAGATCTTCTTTCACTTCAGCGGCTTGATGTACGGTCCTTCATTGCTTCGTCGTCACCTATAACGCACCTCCCGCAAACACTCTCACGAGATGTTGCGGACATTCAAATCTGAAAATTTTTAGAGTTCAGTTTTCATTAAATTAAATCTTATTCAGCGAATCAAATGCCTCACTATTCTTTGTTTGAAAAATTAAAAATGAAATMATTTAATTGTCTGAACGATTTTCAGTGACATGACTCCACAGGAAAAAACTCCAGAAGTCGATATCGATGATGGGCATGAAGATGGAGAGATATCTGACGATGAAGATGATGCACCAGTTGAACTTCCTTCTAATCAACCTAACAGTGAGTTTCGTTCTCGAATTCTTGAAATTTTTATTGTTTCTGTGTTCAGCGCTGGTCAACTACCCCTCATCGGACGACGAAAAATCTCCAGAAGATGTTATCAGCGCGTACAAGCAGAAAATCGCTGAGCAAAAGAAAGAAGAAGCAGTTCCTGAAGTCTCTGTAGATCCGAAATTGTGCAAAGTCTGCCTGAAAAATGAGCACAAATACAGATGTCCAAGATGTGAGCTACGCACATGCTCACTCGATTGTTCAAAGAAACACAAAGCGGATAACGATGTAAGATGTTTTATTTATGAACAATTATTCAATTTCTCGTTTTAGTGTGATGGTGTGAGGCAAGCATTCACCAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTATTCAGCGAATCAAATG</pcr_primer_p1>
		<pcr_primer_p2>CACAGAAACAATAAAAATTTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTTATTCAGCGAATCAAATGCCTCACTATTCTTTGTTTGAAAAATTAAAAATGAAATCATTTAATTGTCTGAACGATTTTCAGTGACATGACTCCACAGGAAAAAACTCCAGAAGTCGATATCGATGATGGGCATGAAGATGGAGAGATATCTGACGATGAAGATGATGCACCAGTTGAACTTCCTTCTAATCAACCTAACAGTGAGTTTCGTTCTCGAATTCTTGAAATTTTTATTGTTTCTGTG</canonical_amplicon>
		<polymorphic_amplicon>TCTTATTCAGCGAATCAAATGCCTCACTATTCTTTGTTTGAAAAATTAAAAATGAAATMATTTAATTGTCTGAACGATTTTCAGTGACATGACTCCACAGGAAAAAACTCCAGAAGTCGATATCGATGATGGGCATGAAGATGGAGAGATATCTGACGATGAAGATGATGCACCAGTTGAACTTCCTTCTAATCAACCTAACAGTGAGTTTCGTTCTCGAATTCTTGAAATTTTTATTGTTTCTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3121</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>674271</contig_pos>
        <strand>+</strand>
        <context>TCTAATCTCC[A/G]ACTTTCTATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGTGGATTTTCTTGTAAATAACCTAATTTGCCGAAATTATCTAATCTCC</left_flank>
        <right_flank>ACTTTCTATCGAACTCGTTTATGACACAGATTGAAGAATACGCTTAAACA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTGTTATTCAAGCATGACAAGGATTGTATTCTACTAAAAATCATGTTAAATTTTTGATAATGTTAATTGTGGGCAGGAGTACTGTAATGTATCGTTTATAAATTTTAGTATCGGGTTCAATGGAATTTCGACTTTGAAGTTTTATTGTTCGGGTTGAGAAAAACATTGAAAGGACAATTAAATGGATGTTCCATCCAATAGGGAATCTTTCAAATTATTATTCTGATTTAAAAAATTCGGACCTGTTGAAGAGAAACGCTGAACGAGACCGAAGGTCACAGCGACAGCTACCGTAACCTAAAACATTTTTATTGTCGGGATTTATTTTCTCTTTTTTCACTGTTTTTCGGTTACGGTAGTTGTCGCTGCAGGACTTTCTTTCTGTCATGGTCCCCAGTGTCTCTCTTCCATAACTCCGGTTTTTTTTTCTACCGGGATTCTTTGTTCCAGTGGATTTTCTTGTAAATAACCTAATTTGCCGAAATTATCTAATCTCCGACTTTCTATCGAACTCGTTTATGACACAGATTGAAGAATACGCTTAAACAAATCCCATTTTATACACGGCCACAACCTCTTCTGATCACCTAACCTTTTTACCGTCAGATCGAATTAAAGAAATAATAAGCTCTTTATGATAAGACTATTGAAATCAGTTCTTTAGAAGAACTGCAGTGGGATTTCTTTTCATAGACCATGTACTTTTGTTTTCGATTCTATTCCGATTGTATCACTTTGTCATTTCTAATTATTTCGTATTGTACAATTTGAATACTGAGAACATACTCTTAAAATCAGAACACTTTATTCGGTGACTCAATATCCATAGAAACGATGATGCAATTAGTTGCTTTGATAACAGCTGATAATCGTAAAAAACTCTATTTTTTTACATTTATTAGTTTTTGGTCGATGCACATATACGATTATACTAGTGTCCACGGGGATTCTCTTCGTGTTTGGTTTCAAATAAAATGCAAGAAACTAATAATGAAAGC</canonical>
            <polymorphic>TCCTGTTATTCAAGCATGACAAGGATTGTATTCTACTAAAAATCATGTTAAATTTTTGATAATGTTAATTGTGGGCAGGAGTACTGTAATGTATCGTTTATAAATTTTAGTATCGGGTTCAATGGAATTTCGACTTTGAAGTTTTATTGTTCGGGTTGAGAAAAACATTGAAAGGACAATTAAATGGATGTTCCATCCAATAGGGAATCTTTCAAATTATTATTCTGATTTAAAAAATTCGGACCTGTTGAAGAGAAACGCTGAACGAGACCGAAGGTCACAGCGACAGCTACCGTAACCTAAAACATTTTTATTGTCGGGATTTATTTTCTCTTTTTTCACTGTTTTTCGGTTACGGTAGTTGTCGCTGCAGGACTTTCTTTCTGTCATGGTCCCCAGTGTCTCTCTTCCATAACTCCGGTTTTTTTTTCTACCGGGATTCTTTGTTCCAGTGGATTTTCTTGTAAATAACCTAATTTGCCGAAATTATCTAATCTCCRACTTTCTATCGAACTCGTTTATGACACAGATTGAAGAATACGCTTAAACAAATCCCATTTTATACACGGCCACAACCTCTTCTGATCACCTAACCTTTTTACCGTCAGATCGAATTAAAGAAATAATAAGCTCTTTATGATAAGACTATTGAAATCAGTTCTTTAGAAGAACTGCAGTGGGATTTCTTTTCATAGACCATGTACTTTTGTTTTCGATTCTATTCCGATTGTATCACTTTGTCATTTCTAATTATTTCGTATTGTACAATTTGAATACTGAGAACATACTCTTAAAATCAGAACACTTTATTCGGTGACTCAATATCCATAGAAACGATGATGCAATTAGTTGCTTTGATAACAGCTGATAATCGTAAAAAACTCTATTTTTTTACATTTATTAGTTTTTGGTCGATGCACATATACGATTATACTAGTGTCCACGGGGATTCTCTTCGTGTTTGGTTTCAAATAAAATGCAAGAAACTAATAATGAAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>258 226 201 118 84 74 24 15</canonical_bands>
                <polymorphic_bands>342 226 201 118 74 24 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCCAGTGGATTTTCTTGTAA</pcr_primer_p1>
		<pcr_primer_p2>ATCCCACTGCAGTTCTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>GTTCCAGTGGATTTTCTTGTAAATAACCTAATTTGCCGAAATTATCTAATCTCCGACTTTCTATCGAACTCGTTTATGACACAGATTGAAGAATACGCTTAAACAAATCCCATTTTATACACGGCCACAACCTCTTCTGATCACCTAACCTTTTTACCGTCAGATCGAATTAAAGAAATAATAAGCTCTTTATGATAAGACTATTGAAATCAGTTCTTTAGAAGAACTGCAGTGGGAT</canonical_amplicon>
		<polymorphic_amplicon>GTTCCAGTGGATTTTCTTGTAAATAACCTAATTTGCCGAAATTATCTAATCTCCRACTTTCTATCGAACTCGTTTATGACACAGATTGAAGAATACGCTTAAACAAATCCCATTTTATACACGGCCACAACCTCTTCTGATCACCTAACCTTTTTACCGTCAGATCGAATTAAAGAAATAATAAGCTCTTTATGATAAGACTATTGAAATCAGTTCTTTAGAAGAACTGCAGTGGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3122</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>676839</contig_pos>
        <strand>+</strand>
        <context>CTCTGTGTCT[C/T]TAGTATGATA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATCAGCTCATTCTTATTCCGATCTTGTTCGACGTCACTCTCTGTGTCT</left_flank>
        <right_flank>TAGTATGATAAATTAGAAGCAGTTCCGGGCTTGAGGGAGACACATGTCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTCATGAGATCTGTGTGTGTGCGTGTGTGAGTGTGCTCGTCGAACCGGAGCCAACGGAGAGAGAGGCCTTCTTCGGATCGATAAGGTGCAGTGCAGCTCCCTTCTGAAACGACAGCTCCATCGTATCGATCATTGCGGCACACACGCGCATGAGGCACAGCTTTCGCCCCCACCACCTCTACATCGTCTTCGTCTTCTTTTTCTTTTCCTTTTTTCTTTTTCTTTTCCCTCGCCTGTCTCGCTCTGCTTTCCGCGCCGCCCACTTTTTCAGCACCGATCGGACGGCTCAACAAAACTGACAGCTTTTTTTCTCGTTTCTTGAATTTGCGATAGGCGCGCGCAAAGAAAAGATTTTGGAATTTCCGTTTCGCTGTCATGTATAAATGAGTTATATGTTTTTGTGTTTTGTCTTTCTGAAATTACAAGTTGAATTTGTCCTTTTTCACTTCATCAGCTCATTCTTATTCCGATCTTGTTCGACGTCACTCTCTGTGTCTTTAGTATGATAAATTAGAAGCAGTTCCGGGCTTGAGGGAGACACATGTCAATCTTTTTTCTCTGTTTCGGAAATTAGCAAATCTCAAAAAGGGATTTATGAAATTTATGAATTGGCAAAACAAATTGAATTTCTTTGAGTCATGGTGTTCAACTACAGAAAAAAATTAATCATATACAATAGATATCATTTCCGGAAATGTGATGCCCTTTATGTTAAAGTGAAAAATCGGAAATGAAATCTGGTTATCATAATAGAATCCCACCCAATTCGTCCACTTTGAGCTCATATATCTCAATTCCTGTGAAAGATACCAAAAGCTTGTCAACTGATAAAATGTTGGTGATATCATGTCAAACATTTTATCAGTTTACAGTTTTTTGTTATTTCATAGGATTTGCGATAATTAAGCTCAAAGTTCAAGTATAGGGTGGCCATCTATTAGTGTTTACCGTATCTCTGTATTTCAACGTTTATCTCTACAATTCGAGTTTTATTTTAG</canonical>
            <polymorphic>GACTCATGAGATCTGTGTGTGTGCGTGTGTGAGTGTGCTCGTCGAACCGGAGCCAACGGAGAGAGAGGCCTTCTTCGGATCGATAAGGTGCAGTGCAGCTCCCTTCTGAAACGACAGCTCCATCGTATCGATCATTGCGGCACACACGCGCATGAGGCACAGCTTTCGCCCCCACCACCTCTACATCGTCTTCGTCTTCTTTTTCTTTTCCTTTTTTCTTTTTCTTTTCCCTCGCCTGTCTCGCTCTGCTTTCCGCGCCGCCCACTTTTTCAGCACCGATCGGACGGCTCAACAAAACTGACAGCTTTTTTTCTCGTTTCTTGAATTTGCGATAGGCGCGCGCAAAGAAAAGATTTTGGAATTTCCGTTTCGCTGTCATGTATAAATGAGTTATATGTTTTTGTGTTTTGTCTTTCTGAAATTACAAGTTGAATTTGTCCTTTTTCACTTCATCAGCTCATTCTTATTCCGATCTTGTTCGACGTCACTCTCTGTGTCTYTAGTATGATAAATTAGAAGCAGTTCCGGGCTTGAGGGAGACACATGTCAATCTTTTTTCTCTGTTTCGGAAATTAGCAAATCTCAAAAAGGGATTTATGAAATTTATGAATTGGCAAAACAAATTGAATTTCTTTGAGTCATGGTGTTCAACTACAGAAAAAAATTAATCATATACAATAGATATCATTTCCGGAAATGTGATGCCCTTTATGTTAAAGTGAAAAATCGGAAATGAAATCTGGTTATCATAATAGAATCCCACCCAATTCGTCCACTTTGAGCTCATATATCTCAATTCCTGTGAAAGATACCAAAAGCTTGTCAACTGATAAAATGTTGGTGATATCATGTCAAACATTTTATCAGTTTACAGTTTTTTGTTATTTCATAGGATTTGCGATAATTAAGCTCAAAGTTCAAGTATAGGGTGGCCATCTATTAGTGTTTACCGTATCTCTGTATTTCAACGTTTATCTCTACAATTCGAGTTTTATTTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGTTTTGTCTTTCTGAAATTA</pcr_primer_p1>
		<pcr_primer_p2>GAACACCATGACTCAAAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTGTTTTGTCTTTCTGAAATTACAAGTTGAATTTGTCCTTTTTCACTTCATCAGCTCATTCTTATTCCGATCTTGTTCGACGTCACTCTCTGTGTCTTTAGTATGATAAATTAGAAGCAGTTCCGGGCTTGAGGGAGACACATGTCAATCTTTTTTCTCTGTTTCGGAAATTAGCAAATCTCAAAAAGGGATTTATGAAATTTATGAATTGGCAAAACAAATTGAATTTCTTTGAGTCATGGTGTTC</canonical_amplicon>
		<polymorphic_amplicon>TGTGTTTTGTCTTTCTGAAATTACAAGTTGAATTTGTCCTTTTTCACTTCATCAGCTCATTCTTATTCCGATCTTGTTCGACGTCACTCTCTGTGTCTYTAGTATGATAAATTAGAAGCAGTTCCGGGCTTGAGGGAGACACATGTCAATCTTTTTTCTCTGTTTCGGAAATTAGCAAATCTCAAAAAGGGATTTATGAAATTTATGAATTGGCAAAACAAATTGAATTTCTTTGAGTCATGGTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3123</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>710594</contig_pos>
        <strand>+</strand>
        <context>CAGTACTTCT[C/G]CTTATCACCG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCTCGCCGAATGCCACATCTCCTTCATATCGAGTGGGCGCCAGTACTTCT</left_flank>
        <right_flank>CTTATCACCGTCCCATGTATGCATGGCAAAACGCCAACTAACTATCCTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAGAGTCGCACGTTTGGGCTCTCCTTCTTGTCCTGGAATTAGAGACGTACCCATCATAGGTATGCCACTTTCAAGTTGCCAATTAATACGCTCAATTTACAGAACCACTTACATGCAAGAAAGTTTCTCATGATCGTTTGACAGTGCTTGAGTTCAGAAAGGACTGTGTTGTTACTGCGTGCCAAGAAGGCTTCATTTGCACTTGGAGCCGGCCATCTGACCGAGACGACGTGAAACAAGATAATCTCAGTTCAACAGCGGCTGCGACGCCAGAATCAGAACAGAAACCTTCTGTTTCGGCCACCGCATCGTTTGGTTATGGATCAGAAATATCGAACGGTGTTACTGGATCTCGTTCGTCTAGTAACTTCAGTACCCGTAAGTTCGACACATCCCTGATTCTTTACTAACCCATCTGAAGCATTCTAGATGAGCTACAACAACTCCGCTCGCCGAATGCCACATCTCCTTCATATCGAGTGGGCGCCAGTACTTCTGCTTATCACCGTCCCATGTATGCATGGCAAAACGCCAACTAACTATCCTTCAACGGGTATTTTGTCTTTTCACAATTAGGTTTATGTTTGTCTATTTTTTATTTATTTTCAGCCAACTCTAATTATCCTCTAGGATGTATTCATGTATTATAATTACATTTTTTTTTCTCATCCCTCCCACTGACTTTTGGCTCTGCTCACTTGCTCACCGTTTTCTGATTTTTTTATTAGGTTGAAATGTTTTCATGATTTCCTGTGCTAGAAAGATTCCTGTGCCTAGTGTTTTCACCACTCCGTTCCAAATTTGTTTCTGGTCAATAAAGTTATTACTTACTTTGGAATTGTTTAGTTTTAACTTTTTTGGCGATTCAAGTCCAACATTCTCTATCTGTGTTTCATTAATTGACGGTGCCGTATGCCCAATTTCAGAATGACCGAAGAGATAGACAATGTGCAAGTTAGCAAGCAAGAGCTCGAAATCTACGATCGTCAAGTTCGTCT</canonical>
            <polymorphic>TTCAGAGTCGCACGTTTGGGCTCTCCTTCTTGTCCTGGAATTAGAGACGTACCCATCATAGGTATGCCACTTTCAAGTTGCCAATTAATACGCTCAATTTACAGAACCACTTACATGCAAGAAAGTTTCTCATGATCGTTTGACAGTGCTTGAGTTCAGAAAGGACTGTGTTGTTACTGCGTGCCAAGAAGGCTTCATTTGCACTTGGAGCCGGCCATCTGACCGAGACGACGTGAAACAAGATAATCTCAGTTCAACAGCGGCTGCGACGCCAGAATCAGAACAGAAACCTTCTGTTTCGGCCACCGCATCGTTTGGTTATGGATCAGAAATATCGAACGGTGTTACTGGATCTCGTTCGTCTAGTAACTTCAGTACCCGTAAGTTCGACACATCCCTGATTCTTTACTAACCCATCTGAAGCATTCTAGATGAGCTACAACAACTCCGCTCGCCGAATGCCACATCTCCTTCATATCGAGTGGGCGCCAGTACTTCTSCTTATCACCGTCCCATGTATGCATGGCAAAACGCCAACTAACTATCCTTCAACGGGTATTTTGTCTTTTCACAATTAGGTTTATGTTTGTCTATTTTTTATTTATTTTCAGCCAACTCTAATTATCCTCTAGGATGTATTCATGTATTATAATTACATTTTTTTTTCTCATCCCTCCCACTGACTTTTGGCTCTGCTCACTTGCTCACCGTTTTCTGATTTTTTTATTAGGTTGAAATGTTTTCATGATTTCCTGTGCTAGAAAGATTCCTGTGCCTAGTGTTTTCACCACTCCGTTCCAAATTTGTTTCTGGTCAATAAAGTTATTACTTACTTTGGAATTGTTTAGTTTTAACTTTTTTGGCGATTCAAGTCCAACATTCTCTATCTGTGTTTCATTAATTGACGGTGCCGTATGCCCAATTTCAGAATGACCGAAGAGATAGACAATGTGCAAGTTAGCAAGCAAGAGCTCGAAATCTACGATCGTCAAGTTCGTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTGGATCTCGTTCGTCTAGTA</pcr_primer_p1>
		<pcr_primer_p2>GACAAACATAAACCTAATTGTGAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TACTGGATCTCGTTCGTCTAGTAACTTCAGTACCCGTAAGTTCGACACATCCCTGATTCTTTACTAACCCATCTGAAGCATTCTAGATGAGCTACAACAACTCCGCTCGCCGAATGCCACATCTCCTTCATATCGAGTGGGCGCCAGTACTTCTGCTTATCACCGTCCCATGTATGCATGGCAAAACGCCAACTAACTATCCTTCAACGGGTATTTTGTCTTTTCACAATTAGGTTTATGTTTGTC</canonical_amplicon>
		<polymorphic_amplicon>TACTGGATCTCGTTCGTCTAGTAACTTCAGTACCCGTAAGTTCGACACATCCCTGATTCTTTACTAACCCATCTGAAGCATTCTAGATGAGCTACAACAACTCCGCTCGCCGAATGCCACATCTCCTTCATATCGAGTGGGCGCCAGTACTTCTSCTTATCACCGTCCCATGTATGCATGGCAAAACGCCAACTAACTATCCTTCAACGGGTATTTTGTCTTTTCACAATTAGGTTTATGTTTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3124</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>718250</contig_pos>
        <strand>+</strand>
        <context>TCATGAAGAA[A/T]TAACGGAGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCATTCTTTGCACAAAAACTCCAGAAATTTTCTGTTTCATCATGAAGAA</left_flank>
        <right_flank>TAACGGAGACAGGTGGGTGTCTAATCCCACTACAGTAAGACAACCGAGAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGATTAACGAATTTTCGACTTTTCGATTTTTTTTTGGATTTCCAAATTTCTGGATTTCTATCTCAGGACTTTATAACTTTATAATTTCAGGTTTTTAGAATTTCAGGATTTCCGAATTTCCGTTTTCTGAATGCCTGGATTTTAGGATTTCAGAGTTTCCGATTTCTGAATTCCTGGATTGTAGAGTTTTAGGATTCTTGATTCTAGATTTTCGAATTTCCGGATTACCGGATTTCCTAATTTTCGATTTCTGGATTCCTGGATTTTACGATTTCAGAATTTGAGGATTTCCAATTTTGAAATTGTGTAATTTATGCTTTCAGTTTCTGCATCATCAATTTTCGAACCCAACACTTTCGCGATGCCTGGCAGTTGGGAAAAGCAATAATCATAAACCTTTTCTCAAGTTATTCGTTAAAATCTTTCAACTCTTTCTCAATTGTTTTTTCTCATTCTTTGCACAAAAACTCCAGAAATTTTCTGTTTCATCATGAAGAATTAACGGAGACAGGTGGGTGTCTAATCCCACTACAGTAAGACAACCGAGAGATTTGAGACATTTGTACCCTCGTACATCATGATGAGAGAAAAGTGTGCGTTTCCACTTCCTTTATTGAAAGAAAATCTTTGGAATACCCACAAAAAGTATTTTATACTTTGTAAAAATTCAGAATCAAAAAATGTTTATCACAAAAATTTAACAAGAGGAAGAGTTCAGTAAACTTTCGAAGCTTCCTTATAGTCTTTCATCCCATCGATTCTCTACGATTTTCGCAATTTGTTCTTCTTTGTCTGTTTCCATTTGACCTGGAAAAATAAGAATACATAAATAAAAGTTTGAAAAATTGAAAATTAACCTCGGATTTCATTTTTCTTGATATCTGGATGAGGGTTTCGTAGACATTCGTAGACAGAATCCATAATTATGTCTTCTTTTTCAAGATCATGTTCACTTATTTCTCTCAAGTAATCTAGATAGTATCCGATGTTTCTTTCCTG</canonical>
            <polymorphic>CGGATTAACGAATTTTCGACTTTTCGATTTTTTTTTGGATTTCCAAATTTCTGGATTTCTATCTCAGGACTTTATAACTTTATAATTTCAGGTTTTTAGAATTTCAGGATTTCCGAATTTCCGTTTTCTGAATGCCTGGATTTTAGGATTTCAGAGTTTCCGATTTCTGAATTCCTGGATTGTAGAGTTTTAGGATTCTTGATTCTAGATTTTCGAATTTCCGGATTACCGGATTTCCTAATTTTCGATTTCTGGATTCCTGGATTTTACGATTTCAGAATTTGAGGATTTCCAATTTTGAAATTGTGTAATTTATGCTTTCAGTTTCTGCATCATCAATTTTCGAACCCAACACTTTCGCGATGCCTGGCAGTTGGGAAAAGCAATAATCATAAACCTTTTCTCAAGTTATTCGTTAAAATCTTTCAACTCTTTCTCAATTGTTTTTTCTCATTCTTTGCACAAAAACTCCAGAAATTTTCTGTTTCATCATGAAGAAWTAACGGAGACAGGTGGGTGTCTAATCCCACTACAGTAAGACAACCGAGAGATTTGAGACATTTGTACCCTCGTACATCATGATGAGAGAAAAGTGTGCGTTTCCACTTCCTTTATTGAAAGAAAATCTTTGGAATACCCACAAAAAGTATTTTATACTTTGTAAAAATTCAGAATCAAAAAATGTTTATCACAAAAATTTAACAAGAGGAAGAGTTCAGTAAACTTTCGAAGCTTCCTTATAGTCTTTCATCCCATCGATTCTCTACGATTTTCGCAATTTGTTCTTCTTTGTCTGTTTCCATTTGACCTGGAAAAATAAGAATACATAAATAAAAGTTTGAAAAATTGAAAATTAACCTCGGATTTCATTTTTCTTGATATCTGGATGAGGGTTTCGTAGACATTCGTAGACAGAATCCATAATTATGTCTTCTTTTTCAAGATCATGTTCACTTATTTCTCTCAAGTAATCTAGATAGTATCCGATGTTTCTTTCCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>411 199 155 146 84 5</canonical_bands>
                <polymorphic_bands>411 283 155 146 5</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>168 101 81 78 71 68 54 46 39 38 37 35 30 28 24 22 16 16 15 10 8 8 7</canonical_bands>
                <polymorphic_bands>190 101 81 78 71 68 54 46 39 38 37 35 30 28 24 16 16 15 10 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAAAGCAATAATCATAAACCT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTTCAATAAAGGAAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGAAAAGCAATAATCATAAACCTTTTCTCAAGTTATTCGTTAAAATCTTTCAACTCTTTCTCAATTGTTTTTTCTCATTCTTTGCACAAAAACTCCAGAAATTTTCTGTTTCATCATGAAGAATTAACGGAGACAGGTGGGTGTCTAATCCCACTACAGTAAGACAACCGAGAGATTTGAGACATTTGTACCCTCGTACATCATGATGAGAGAAAAGTGTGCGTTTCCACTTCCTTTATTGAAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>GGAAAAGCAATAATCATAAACCTTTTCTCAAGTTATTCGTTAAAATCTTTCAACTCTTTCTCAATTGTTTTTTCTCATTCTTTGCACAAAAACTCCAGAAATTTTCTGTTTCATCATGAAGAAWTAACGGAGACAGGTGGGTGTCTAATCCCACTACAGTAAGACAACCGAGAGATTTGAGACATTTGTACCCTCGTACATCATGATGAGAGAAAAGTGTGCGTTTCCACTTCCTTTATTGAAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3125</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>718379</contig_pos>
        <strand>+</strand>
        <context>AAGAAAATCT[C/T]TGGAATACCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGATGAGAGAAAAGTGTGCGTTTCCACTTCCTTTATTGAAAGAAAATCT</left_flank>
        <right_flank>TGGAATACCCACAAAAAGTATTTTATACTTTGTAAAAATTCAGAATCAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATGCCTGGATTTTAGGATTTCAGAGTTTCCGATTTCTGAATTCCTGGATTGTAGAGTTTTAGGATTCTTGATTCTAGATTTTCGAATTTCCGGATTACCGGATTTCCTAATTTTCGATTTCTGGATTCCTGGATTTTACGATTTCAGAATTTGAGGATTTCCAATTTTGAAATTGTGTAATTTATGCTTTCAGTTTCTGCATCATCAATTTTCGAACCCAACACTTTCGCGATGCCTGGCAGTTGGGAAAAGCAATAATCATAAACCTTTTCTCAAGTTATTCGTTAAAATCTTTCAACTCTTTCTCAATTGTTTTTTCTCATTCTTTGCACAAAAACTCCAGAAATTTTCTGTTTCATCATGAAGAATTAACGGAGACAGGTGGGTGTCTAATCCCACTACAGTAAGACAACCGAGAGATTTGAGACATTTGTACCCTCGTACATCATGATGAGAGAAAAGTGTGCGTTTCCACTTCCTTTATTGAAAGAAAATCTTTGGAATACCCACAAAAAGTATTTTATACTTTGTAAAAATTCAGAATCAAAAAATGTTTATCACAAAAATTTAACAAGAGGAAGAGTTCAGTAAACTTTCGAAGCTTCCTTATAGTCTTTCATCCCATCGATTCTCTACGATTTTCGCAATTTGTTCTTCTTTGTCTGTTTCCATTTGACCTGGAAAAATAAGAATACATAAATAAAAGTTTGAAAAATTGAAAATTAACCTCGGATTTCATTTTTCTTGATATCTGGATGAGGGTTTCGTAGACATTCGTAGACAGAATCCATAATTATGTCTTCTTTTTCAAGATCATGTTCACTTATTTCTCTCAAGTAATCTAGATAGTATCCGATGTTTCTTTCCTGTTTATAGAGCAGTTAAGAGTTCATAATAAAAAATTAAACTCACCGAATAAAAAACTGTAACCCATCTATTCGGTTCAACCCTCTTCTTCTTTTCCTTGATTCCCAGAACTGCTCCTCCTCTTCTATGAA</canonical>
            <polymorphic>GAATGCCTGGATTTTAGGATTTCAGAGTTTCCGATTTCTGAATTCCTGGATTGTAGAGTTTTAGGATTCTTGATTCTAGATTTTCGAATTTCCGGATTACCGGATTTCCTAATTTTCGATTTCTGGATTCCTGGATTTTACGATTTCAGAATTTGAGGATTTCCAATTTTGAAATTGTGTAATTTATGCTTTCAGTTTCTGCATCATCAATTTTCGAACCCAACACTTTCGCGATGCCTGGCAGTTGGGAAAAGCAATAATCATAAACCTTTTCTCAAGTTATTCGTTAAAATCTTTCAACTCTTTCTCAATTGTTTTTTCTCATTCTTTGCACAAAAACTCCAGAAATTTTCTGTTTCATCATGAAGAATTAACGGAGACAGGTGGGTGTCTAATCCCACTACAGTAAGACAACCGAGAGATTTGAGACATTTGTACCCTCGTACATCATGATGAGAGAAAAGTGTGCGTTTCCACTTCCTTTATTGAAAGAAAATCTYTGGAATACCCACAAAAAGTATTTTATACTTTGTAAAAATTCAGAATCAAAAAATGTTTATCACAAAAATTTAACAAGAGGAAGAGTTCAGTAAACTTTCGAAGCTTCCTTATAGTCTTTCATCCCATCGATTCTCTACGATTTTCGCAATTTGTTCTTCTTTGTCTGTTTCCATTTGACCTGGAAAAATAAGAATACATAAATAAAAGTTTGAAAAATTGAAAATTAACCTCGGATTTCATTTTTCTTGATATCTGGATGAGGGTTTCGTAGACATTCGTAGACAGAATCCATAATTATGTCTTCTTTTTCAAGATCATGTTCACTTATTTCTCTCAAGTAATCTAGATAGTATCCGATGTTTCTTTCCTGTTTATAGAGCAGTTAAGAGTTCATAATAAAAAATTAAACTCACCGAATAAAAAACTGTAACCCATCTATTCGGTTCAACCCTCTTCTTCTTTTCCTTGATTCCCAGAACTGCTCCTCCTCTTCTATGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGTCTAATCCCACTACAGTAA</pcr_primer_p1>
		<pcr_primer_p2>CGATGGGATGAAAGACTATAAG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GGTGTCTAATCCCACTACAGTAAGACAACCGAGAGATTTGAGACATTTGTACCCTCGTACATCATGATGAGAGAAAAGTGTGCGTTTCCACTTCCTTTATTGAAAGAAAATCTTTGGAATACCCACAAAAAGTATTTTATACTTTGTAAAAATTCAGAATCAAAAAATGTTTATCACAAAAATTTAACAAGAGGAAGAGTTCAGTAAACTTTCGAAGCTTCCTTATAGTCTTTCATCCCATCG</canonical_amplicon>
		<polymorphic_amplicon>GGTGTCTAATCCCACTACAGTAAGACAACCGAGAGATTTGAGACATTTGTACCCTCGTACATCATGATGAGAGAAAAGTGTGCGTTTCCACTTCCTTTATTGAAAGAAAATCTYTGGAATACCCACAAAAAGTATTTTATACTTTGTAAAAATTCAGAATCAAAAAATGTTTATCACAAAAATTTAACAAGAGGAAGAGTTCAGTAAACTTTCGAAGCTTCCTTATAGTCTTTCATCCCATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3126</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>882224</contig_pos>
        <strand>+</strand>
        <context>CGATTATTGC[A/G]AATMCAACCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAAAAAATTATTCACCTAGTGAATTGGCTCTGAATCCATCGATTATTGC</left_flank>
        <right_flank>AATACAACCTGGAAAAAGGGAGAAAAGAAAAGAAATAGAAACAATACTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTACATGAATAGTGTCATCGACCTTAAAGAGCAAATAAATAGTGACACTCCTCAGTGTCTACATTATTAATCACTTTTTAACAGTATTCTCCTGCTTTTGATCGTTATCATGGTCAACATAAATTTCTGGAACCTACCCCACTTCCGAACTTTTTACTAATCGCCATAGCATGACTTCTGAACTCCTGCTCCCCATCGTCTTCTTCACTTAAACTGACGTCACCTAGAGTAACTTTGGCAGTGATTGCGCTGAAAAACATAATGATGAAACTATTTGAGCCCCCATTTTTCCTTACAATTCGTTGTTCAGAAATACACAGTGTGCAGCAGTCATTGCAATACTTGGAGCAATAAGGACTCCCCCACAAACATTTGTGTAACCGTCTGGGAAACGAGTGATAACCGAAACCAGTGAAAGTGTATCTGAGAATGGAATTTGATTGAATCATTAAAAAATTATTCACCTAGTGAATTGGCTCTGAATCCATCGATTATTGCGAATACAACCTGGAAAAAGGGAGAAAAGAAAAGAAATAGAAACAATACTTTCATGTTGAATCAGTAAAACAAAATCTTTCAGGATATATACCAAAATCTATGTTGTTGTAGGAGATTATGTTTAGAATCAACATTTCCTATTTCCTCTAATAGAAGCCCACTCAACTTTGATCTCAATCATCTCGATTCCTGTTAAAGATTGCAAGAAATTGTCAATTGATAAAATGTTGGTGATATTGTGATAATAATTTATAAGTTGATAAATTTTTGATACCTTTCACAGGAAGCAAGATAATTGAGGTCCAAGTTGACGGTTTGAGTGGACTTCCATTAGAGGAAATGCGGTATCACTTGGTATTTTGAAACATCTTTCAAAACCTTCGATTAGCCATGAAAAAAGGCGTTGGCTAAAAATGCTAAGTGTAAATGCTGCTGATCGGTCATTGGTTGAAGACTTATGCACATTTTCAATTTCCTGTCTTACCTAAATTGATCAAATCT</canonical>
            <polymorphic>TGTACATGAATAGTGTCATCGACCTTAAAGAGCAAATAAATAGTGACACTCCTCAGTGTCTACATTATTAATCACTTTTTAACAGTATTCTCCTGCTTTTGATCGTTATCATGGTCAACATAAATTTCTGGAACCTACCCCACTTCCGAACTTTTTACTAATCGCCATAGCATGACTTCTGAACTCCTGCTCCCCATCGTCTTCTTCACTTAAACTGACGTCACCTAGAGTAACTTTGGCAGTGATTGCGCTGAAAAACATAATGATGAAACTATTTGAGCCCCCATTTTTCCTTACAATTCGTTGTTCAGAAATACACAGTGTGCAGCAGTCATTGCAATACTTGGAGCAATAAGGACTCCCCCACAAACATTTGTGTAACCGTCTGGGAAACGAGTGATAACCGAAACCAGTGAAAGTGTATCTGAGAATGGAATTTGATTGAATCATTAAAAAATTATTCACCTAGTGAATTGGCTCTGAATCCATCGATTATTGCRAATACAACCTGGAAAAAGGGAGAAAAGAAAAGAAATAGAAACAATACTTTCATGTTGAATCAGTAAAACAAAATCTTTCAGGATATATACCAAAATCTATGTTGTTGTAGGAGATTATGTTTAGAATCAACATTTCCTATTTCCTCTAATAGAAGCCCACTCAACTTTGATCTCAATCATCTCGATTCCTGTTAAAGATTGCAAGAAATTGTCAATTGATAAAATGTTGGTGATATTGTGATAATAATTTATAAGTTGATAAATTTTTGATACCTTTCACAGGAAGCAAGATAATTGAGGTCCAAGTTGACGGTTTGAGTGGACTTCCATTAGAGGAAATGCGGTATCACTTGGTATTTTGAAACATCTTTCAAAACCTTCGATTAGCCATGAAAAAAGGCGTTGGCTAAAAATGCTAAGTGTAAATGCTGCTGATCGGTCATTGGTTGAAGACTTATGCACATTTTCAATTTCCTGTCTTACCTAAATTGATCAAATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATACTTGGAGCAATAAGGACTC</pcr_primer_p1>
		<pcr_primer_p2>TCCTGAAAGATTTTGTTTTACTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATACTTGGAGCAATAAGGACTCCCCCACAAACATTTGTGTAACCGTCTGGGAAACGAGTGATAACCGAAACCAGTGAAAGTGTATCTGAGAATGGAATTTGATTGAATCATTAAAAAATTATTCACCTAGTGAATTGGCTCTGAATCCATCGATTATTGCGAATACAACCTGGAAAAAGGGAGAAAAGAAAAGAAATAGAAACAATACTTTCATGTTGAATCAGTAAAACAAAATCTTTCAGGA</canonical_amplicon>
		<polymorphic_amplicon>AATACTTGGAGCAATAAGGACTCCCCCACAAACATTTGTGTAACCGTCTGGGAAACGAGTGATAACCGAAACCAGTGAAAGTGTATCTGAGAATGGAATTTGATTGAATCATTAAAAAATTATTCACCTAGTGAATTGGCTCTGAATCCATCGATTATTGCRAATACAACCTGGAAAAAGGGAGAAAAGAAAAGAAATAGAAACAATACTTTCATGTTGAATCAGTAAAACAAAATCTTTCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3127</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>882228</contig_pos>
        <strand>+</strand>
        <context>TATTGCRAAT[A/C]CAACCTGGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAATTATTCACCTAGTGAATTGGCTCTGAATCCATCGATTATTGCGAAT</left_flank>
        <right_flank>CAACCTGGAAAAAGGGAGAAAAGAAAAGAAATAGAAACAATACTTTCATG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGAATAGTGTCATCGACCTTAAAGAGCAAATAAATAGTGACACTCCTCAGTGTCTACATTATTAATCACTTTTTAACAGTATTCTCCTGCTTTTGATCGTTATCATGGTCAACATAAATTTCTGGAACCTACCCCACTTCCGAACTTTTTACTAATCGCCATAGCATGACTTCTGAACTCCTGCTCCCCATCGTCTTCTTCACTTAAACTGACGTCACCTAGAGTAACTTTGGCAGTGATTGCGCTGAAAAACATAATGATGAAACTATTTGAGCCCCCATTTTTCCTTACAATTCGTTGTTCAGAAATACACAGTGTGCAGCAGTCATTGCAATACTTGGAGCAATAAGGACTCCCCCACAAACATTTGTGTAACCGTCTGGGAAACGAGTGATAACCGAAACCAGTGAAAGTGTATCTGAGAATGGAATTTGATTGAATCATTAAAAAATTATTCACCTAGTGAATTGGCTCTGAATCCATCGATTATTGCGAATACAACCTGGAAAAAGGGAGAAAAGAAAAGAAATAGAAACAATACTTTCATGTTGAATCAGTAAAACAAAATCTTTCAGGATATATACCAAAATCTATGTTGTTGTAGGAGATTATGTTTAGAATCAACATTTCCTATTTCCTCTAATAGAAGCCCACTCAACTTTGATCTCAATCATCTCGATTCCTGTTAAAGATTGCAAGAAATTGTCAATTGATAAAATGTTGGTGATATTGTGATAATAATTTATAAGTTGATAAATTTTTGATACCTTTCACAGGAAGCAAGATAATTGAGGTCCAAGTTGACGGTTTGAGTGGACTTCCATTAGAGGAAATGCGGTATCACTTGGTATTTTGAAACATCTTTCAAAACCTTCGATTAGCCATGAAAAAAGGCGTTGGCTAAAAATGCTAAGTGTAAATGCTGCTGATCGGTCATTGGTTGAAGACTTATGCACATTTTCAATTTCCTGTCTTACCTAAATTGATCAAATCTTTTT</canonical>
            <polymorphic>CATGAATAGTGTCATCGACCTTAAAGAGCAAATAAATAGTGACACTCCTCAGTGTCTACATTATTAATCACTTTTTAACAGTATTCTCCTGCTTTTGATCGTTATCATGGTCAACATAAATTTCTGGAACCTACCCCACTTCCGAACTTTTTACTAATCGCCATAGCATGACTTCTGAACTCCTGCTCCCCATCGTCTTCTTCACTTAAACTGACGTCACCTAGAGTAACTTTGGCAGTGATTGCGCTGAAAAACATAATGATGAAACTATTTGAGCCCCCATTTTTCCTTACAATTCGTTGTTCAGAAATACACAGTGTGCAGCAGTCATTGCAATACTTGGAGCAATAAGGACTCCCCCACAAACATTTGTGTAACCGTCTGGGAAACGAGTGATAACCGAAACCAGTGAAAGTGTATCTGAGAATGGAATTTGATTGAATCATTAAAAAATTATTCACCTAGTGAATTGGCTCTGAATCCATCGATTATTGCGAATMCAACCTGGAAAAAGGGAGAAAAGAAAAGAAATAGAAACAATACTTTCATGTTGAATCAGTAAAACAAAATCTTTCAGGATATATACCAAAATCTATGTTGTTGTAGGAGATTATGTTTAGAATCAACATTTCCTATTTCCTCTAATAGAAGCCCACTCAACTTTGATCTCAATCATCTCGATTCCTGTTAAAGATTGCAAGAAATTGTCAATTGATAAAATGTTGGTGATATTGTGATAATAATTTATAAGTTGATAAATTTTTGATACCTTTCACAGGAAGCAAGATAATTGAGGTCCAAGTTGACGGTTTGAGTGGACTTCCATTAGAGGAAATGCGGTATCACTTGGTATTTTGAAACATCTTTCAAAACCTTCGATTAGCCATGAAAAAAGGCGTTGGCTAAAAATGCTAAGTGTAAATGCTGCTGATCGGTCATTGGTTGAAGACTTATGCACATTTTCAATTTCCTGTCTTACCTAAATTGATCAAATCTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATACTTGGAGCAATAAGGACTC</pcr_primer_p1>
		<pcr_primer_p2>TCCTGAAAGATTTTGTTTTACTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATACTTGGAGCAATAAGGACTCCCCCACAAACATTTGTGTAACCGTCTGGGAAACGAGTGATAACCGAAACCAGTGAAAGTGTATCTGAGAATGGAATTTGATTGAATCATTAAAAAATTATTCACCTAGTGAATTGGCTCTGAATCCATCGATTATTGCGAATACAACCTGGAAAAAGGGAGAAAAGAAAAGAAATAGAAACAATACTTTCATGTTGAATCAGTAAAACAAAATCTTTCAGGA</canonical_amplicon>
		<polymorphic_amplicon>AATACTTGGAGCAATAAGGACTCCCCCACAAACATTTGTGTAACCGTCTGGGAAACGAGTGATAACCGAAACCAGTGAAAGTGTATCTGAGAATGGAATTTGATTGAATCATTAAAAAATTATTCACCTAGTGAATTGGCTCTGAATCCATCGATTATTGCGAATMCAACCTGGAAAAAGGGAGAAAAGAAAAGAAATAGAAACAATACTTTCATGTTGAATCAGTAAAACAAAATCTTTCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3128</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>884858</contig_pos>
        <strand>+</strand>
        <context>ATAWRCTATT[G/T]TCTACAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATATGCTATT</left_flank>
        <right_flank>TCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTCCGAGCCAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTCAGAATCCAGTTATAGCACATACTCCGAAAATAGTGAAGGAGCATTTACCAACTTTAACTACTACTATCCAATGAACAGTAAGATGATTTTGGGAAGAGGTAATTACAAGTGAAAATATAAATTTCAGAAACCGCTGTAGTTTTTCTGGAACTTAAGGAACAGCCTAAGATCAAAACAAACCTGGACAATCTTTACCCTTGTTGCAAATTCCATAGAAGTGGGTTACTTTTTTTTTGAATCCGCTTTTGATGATATGTTGGTTTCAGTTGAAGTTTCGTCATGTTTGAATAACTATATGAATTCATACGAGGACATATCTAAATGCCTCTCAAATATTGTGACGCAAGATAAAAAATGCCTCAGTCAACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAACGCCATGGTACTACGAATGGCTCCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATATGCTATTGTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTCCGAGCCAAACACGACAGCGGACTGATGCGTTTGATTTATTATTAATCTTGTTCTTGTAGTTCCTGTTGATGTTAATTTAAATAAATTGTTAAACCTGTATTAGAAAGGCTCCTTCAAAGAAAGGGTCCTCTAATAGAAGGGCCTTTCGAGAGGAACTTATAATCATTGAACGTCTCCTTTCAGAATGAGTTGTTTGATTTTGGTGAAATTGATAGATTTTGAAAAATATATGAGTCCCCTCTAATTGAAGGACACCTGTAATAAAAGGGCCCTCCGGAGGTACCGTGGACGTCCCTTACAACGCCTCGTACGTGGGTGAAACTTCTGACCCACAAACTGCATTTTACCATATTTTACAGAGAATATGAATTTGATAAACTTATAAAACACTTGGTTTCCATCTATACAAGGCAAGCCATATAGAAAACAGGAAAATCAATGCAAACAGTATATGAAGC</canonical>
            <polymorphic>CTTTCAGAATCCAGTTATAGCACATACTCCGAAAATAGTGAAGGAGCATTTACCAACTTTAACTACTACTATCCAATGAACAGTAAGATGATTTTGGGAAGAGGTAATTACAAGTGAAAATATAAATTTCAGAAACCGCTGTAGTTTTTCTGGAACTTAAGGAACAGCCTAAGATCAAAACAAACCTGGACAATCTTTACCCTTGTTGCAAATTCCATAGAAGTGGGTTACTTTTTTTTTGAATCCGCTTTTGATGATATGTTGGTTTCAGTTGAAGTTTCGTCATGTTTGAATAACTATATGAATTCATACGAGGACATATCTAAATGCCTCTCAAATATTGTGACGCAAGATAAAAAATGCCTCAGTCAACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAACGCCATGGTACTACGAATGGCTCCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATATGCTATTKTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTCCGAGCCAAACACGACAGCGGACTGATGCGTTTGATTTATTATTAATCTTGTTCTTGTAGTTCCTGTTGATGTTAATTTAAATAAATTGTTAAACCTGTATTAGAAAGGCTCCTTCAAAGAAAGGGTCCTCTAATAGAAGGGCCTTTCGAGAGGAACTTATAATCATTGAACGTCTCCTTTCAGAATGAGTTGTTTGATTTTGGTGAAATTGATAGATTTTGAAAAATATATGAGTCCCCTCTAATTGAAGGACACCTGTAATAAAAGGGCCCTCCGGAGGTACCGTGGACGTCCCTTACAACGCCTCGTACGTGGGTGAAACTTCTGACCCACAAACTGCATTTTACCATATTTTACAGAGAATATGAATTTGATAAACTTATAAAACACTTGGTTTCCATCTATACAAGGCAAGCCATATAGAAAACAGGAAAATCAATGCAAACAGTATATGAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 465 34</canonical_bands>
                <polymorphic_bands>535 465</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>370 293 171 132 34</canonical_bands>
                <polymorphic_bands>370 293 171 166</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTCAAAAAGCGAAGAGAGT</pcr_primer_p1>
		<pcr_primer_p2>AACATCAACAGGAACTACAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAACGCCATGGTACTACGAATGGCTCCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATATGCTATTGTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTCCGAGCCAAACACGACAGCGGACTGATGCGTTTGATTTATTATTAATCTTGTTCTTGTAGTTCCTGTTGATGTT</canonical_amplicon>
		<polymorphic_amplicon>ACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAACGCCATGGTACTACGAATGGCTCCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATATGCTATTKTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTCCGAGCCAAACACGACAGCGGACTGATGCGTTTGATTTATTATTAATCTTGTTCTTGTAGTTCCTGTTGATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3129</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>884852</contig_pos>
        <strand>+</strand>
        <context>ACCGCTATAW[A/G]CTATTKTCTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATAT</left_flank>
        <right_flank>CTATTGTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTCCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCTCCTTTCAGAATCCAGTTATAGCACATACTCCGAAAATAGTGAAGGAGCATTTACCAACTTTAACTACTACTATCCAATGAACAGTAAGATGATTTTGGGAAGAGGTAATTACAAGTGAAAATATAAATTTCAGAAACCGCTGTAGTTTTTCTGGAACTTAAGGAACAGCCTAAGATCAAAACAAACCTGGACAATCTTTACCCTTGTTGCAAATTCCATAGAAGTGGGTTACTTTTTTTTTGAATCCGCTTTTGATGATATGTTGGTTTCAGTTGAAGTTTCGTCATGTTTGAATAACTATATGAATTCATACGAGGACATATCTAAATGCCTCTCAAATATTGTGACGCAAGATAAAAAATGCCTCAGTCAACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAACGCCATGGTACTACGAATGGCTCCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATATGCTATTGTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTCCGAGCCAAACACGACAGCGGACTGATGCGTTTGATTTATTATTAATCTTGTTCTTGTAGTTCCTGTTGATGTTAATTTAAATAAATTGTTAAACCTGTATTAGAAAGGCTCCTTCAAAGAAAGGGTCCTCTAATAGAAGGGCCTTTCGAGAGGAACTTATAATCATTGAACGTCTCCTTTCAGAATGAGTTGTTTGATTTTGGTGAAATTGATAGATTTTGAAAAATATATGAGTCCCCTCTAATTGAAGGACACCTGTAATAAAAGGGCCCTCCGGAGGTACCGTGGACGTCCCTTACAACGCCTCGTACGTGGGTGAAACTTCTGACCCACAAACTGCATTTTACCATATTTTACAGAGAATATGAATTTGATAAACTTATAAAACACTTGGTTTCCATCTATACAAGGCAAGCCATATAGAAAACAGGAAAATCAATGCAAACAGTATA</canonical>
            <polymorphic>AACCTCCTTTCAGAATCCAGTTATAGCACATACTCCGAAAATAGTGAAGGAGCATTTACCAACTTTAACTACTACTATCCAATGAACAGTAAGATGATTTTGGGAAGAGGTAATTACAAGTGAAAATATAAATTTCAGAAACCGCTGTAGTTTTTCTGGAACTTAAGGAACAGCCTAAGATCAAAACAAACCTGGACAATCTTTACCCTTGTTGCAAATTCCATAGAAGTGGGTTACTTTTTTTTTGAATCCGCTTTTGATGATATGTTGGTTTCAGTTGAAGTTTCGTCATGTTTGAATAACTATATGAATTCATACGAGGACATATCTAAATGCCTCTCAAATATTGTGACGCAAGATAAAAAATGCCTCAGTCAACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAACGCCATGGTACTACGAATGGCTCCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATATRCTATTGTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTCCGAGCCAAACACGACAGCGGACTGATGCGTTTGATTTATTATTAATCTTGTTCTTGTAGTTCCTGTTGATGTTAATTTAAATAAATTGTTAAACCTGTATTAGAAAGGCTCCTTCAAAGAAAGGGTCCTCTAATAGAAGGGCCTTTCGAGAGGAACTTATAATCATTGAACGTCTCCTTTCAGAATGAGTTGTTTGATTTTGGTGAAATTGATAGATTTTGAAAAATATATGAGTCCCCTCTAATTGAAGGACACCTGTAATAAAAGGGCCCTCCGGAGGTACCGTGGACGTCCCTTACAACGCCTCGTACGTGGGTGAAACTTCTGACCCACAAACTGCATTTTACCATATTTTACAGAGAATATGAATTTGATAAACTTATAAAACACTTGGTTTCCATCTATACAAGGCAAGCCATATAGAAAACAGGAAAATCAATGCAAACAGTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTCAAAAAGCGAAGAGAGT</pcr_primer_p1>
		<pcr_primer_p2>AACATCAACAGGAACTACAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAACGCCATGGTACTACGAATGGCTCCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATATGCTATTGTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTCCGAGCCAAACACGACAGCGGACTGATGCGTTTGATTTATTATTAATCTTGTTCTTGTAGTTCCTGTTGATGTT</canonical_amplicon>
		<polymorphic_amplicon>ACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAACGCCATGGTACTACGAATGGCTCCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATATRCTATTGTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTCCGAGCCAAACACGACAGCGGACTGATGCGTTTGATTTATTATTAATCTTGTTCTTGTAGTTCCTGTTGATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3130</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>884851</contig_pos>
        <strand>+</strand>
        <context>TACCGCTATA[A/T]RCTATTKTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATA</left_flank>
        <right_flank>GCTATTGTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACCTCCTTTCAGAATCCAGTTATAGCACATACTCCGAAAATAGTGAAGGAGCATTTACCAACTTTAACTACTACTATCCAATGAACAGTAAGATGATTTTGGGAAGAGGTAATTACAAGTGAAAATATAAATTTCAGAAACCGCTGTAGTTTTTCTGGAACTTAAGGAACAGCCTAAGATCAAAACAAACCTGGACAATCTTTACCCTTGTTGCAAATTCCATAGAAGTGGGTTACTTTTTTTTTGAATCCGCTTTTGATGATATGTTGGTTTCAGTTGAAGTTTCGTCATGTTTGAATAACTATATGAATTCATACGAGGACATATCTAAATGCCTCTCAAATATTGTGACGCAAGATAAAAAATGCCTCAGTCAACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAACGCCATGGTACTACGAATGGCTCCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATATGCTATTGTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTCCGAGCCAAACACGACAGCGGACTGATGCGTTTGATTTATTATTAATCTTGTTCTTGTAGTTCCTGTTGATGTTAATTTAAATAAATTGTTAAACCTGTATTAGAAAGGCTCCTTCAAAGAAAGGGTCCTCTAATAGAAGGGCCTTTCGAGAGGAACTTATAATCATTGAACGTCTCCTTTCAGAATGAGTTGTTTGATTTTGGTGAAATTGATAGATTTTGAAAAATATATGAGTCCCCTCTAATTGAAGGACACCTGTAATAAAAGGGCCCTCCGGAGGTACCGTGGACGTCCCTTACAACGCCTCGTACGTGGGTGAAACTTCTGACCCACAAACTGCATTTTACCATATTTTACAGAGAATATGAATTTGATAAACTTATAAAACACTTGGTTTCCATCTATACAAGGCAAGCCATATAGAAAACAGGAAAATCAATGCAAACAGTAT</canonical>
            <polymorphic>AAACCTCCTTTCAGAATCCAGTTATAGCACATACTCCGAAAATAGTGAAGGAGCATTTACCAACTTTAACTACTACTATCCAATGAACAGTAAGATGATTTTGGGAAGAGGTAATTACAAGTGAAAATATAAATTTCAGAAACCGCTGTAGTTTTTCTGGAACTTAAGGAACAGCCTAAGATCAAAACAAACCTGGACAATCTTTACCCTTGTTGCAAATTCCATAGAAGTGGGTTACTTTTTTTTTGAATCCGCTTTTGATGATATGTTGGTTTCAGTTGAAGTTTCGTCATGTTTGAATAACTATATGAATTCATACGAGGACATATCTAAATGCCTCTCAAATATTGTGACGCAAGATAAAAAATGCCTCAGTCAACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAACGCCATGGTACTACGAATGGCTCCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATAWGCTATTGTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTCCGAGCCAAACACGACAGCGGACTGATGCGTTTGATTTATTATTAATCTTGTTCTTGTAGTTCCTGTTGATGTTAATTTAAATAAATTGTTAAACCTGTATTAGAAAGGCTCCTTCAAAGAAAGGGTCCTCTAATAGAAGGGCCTTTCGAGAGGAACTTATAATCATTGAACGTCTCCTTTCAGAATGAGTTGTTTGATTTTGGTGAAATTGATAGATTTTGAAAAATATATGAGTCCCCTCTAATTGAAGGACACCTGTAATAAAAGGGCCCTCCGGAGGTACCGTGGACGTCCCTTACAACGCCTCGTACGTGGGTGAAACTTCTGACCCACAAACTGCATTTTACCATATTTTACAGAGAATATGAATTTGATAAACTTATAAAACACTTGGTTTCCATCTATACAAGGCAAGCCATATAGAAAACAGGAAAATCAATGCAAACAGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTCAAAAAGCGAAGAGAGT</pcr_primer_p1>
		<pcr_primer_p2>AACATCAACAGGAACTACAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAACGCCATGGTACTACGAATGGCTCCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATATGCTATTGTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTCCGAGCCAAACACGACAGCGGACTGATGCGTTTGATTTATTATTAATCTTGTTCTTGTAGTTCCTGTTGATGTT</canonical_amplicon>
		<polymorphic_amplicon>ACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAACGCCATGGTACTACGAATGGCTCCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATAWGCTATTGTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTCCGAGCCAAACACGACAGCGGACTGATGCGTTTGATTTATTATTAATCTTGTTCTTGTAGTTCCTGTTGATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3131</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>884799</contig_pos>
        <strand>+</strand>
        <context>ACGAATGGCT[C/T]CGCTATATGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTCTTGAAAGAAACGAAGAAAATCAAACGCCATGGTACTACGAATGGCT</left_flank>
        <right_flank>CGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGCAAATCTCACAGGTTTTTATTTAGATGTATTATCTAGAGAGTGTTATTAAACCTCCTTTCAGAATCCAGTTATAGCACATACTCCGAAAATAGTGAAGGAGCATTTACCAACTTTAACTACTACTATCCAATGAACAGTAAGATGATTTTGGGAAGAGGTAATTACAAGTGAAAATATAAATTTCAGAAACCGCTGTAGTTTTTCTGGAACTTAAGGAACAGCCTAAGATCAAAACAAACCTGGACAATCTTTACCCTTGTTGCAAATTCCATAGAAGTGGGTTACTTTTTTTTTGAATCCGCTTTTGATGATATGTTGGTTTCAGTTGAAGTTTCGTCATGTTTGAATAACTATATGAATTCATACGAGGACATATCTAAATGCCTCTCAAATATTGTGACGCAAGATAAAAAATGCCTCAGTCAACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAACGCCATGGTACTACGAATGGCTCCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATATGCTATTGTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTCCGAGCCAAACACGACAGCGGACTGATGCGTTTGATTTATTATTAATCTTGTTCTTGTAGTTCCTGTTGATGTTAATTTAAATAAATTGTTAAACCTGTATTAGAAAGGCTCCTTCAAAGAAAGGGTCCTCTAATAGAAGGGCCTTTCGAGAGGAACTTATAATCATTGAACGTCTCCTTTCAGAATGAGTTGTTTGATTTTGGTGAAATTGATAGATTTTGAAAAATATATGAGTCCCCTCTAATTGAAGGACACCTGTAATAAAAGGGCCCTCCGGAGGTACCGTGGACGTCCCTTACAACGCCTCGTACGTGGGTGAAACTTCTGACCCACAAACTGCATTTTACCATATTTTACAGAGAATATGAATTTGATAAACTTATAAAACACTTGGTTTCC</canonical>
            <polymorphic>ATAGCAAATCTCACAGGTTTTTATTTAGATGTATTATCTAGAGAGTGTTATTAAACCTCCTTTCAGAATCCAGTTATAGCACATACTCCGAAAATAGTGAAGGAGCATTTACCAACTTTAACTACTACTATCCAATGAACAGTAAGATGATTTTGGGAAGAGGTAATTACAAGTGAAAATATAAATTTCAGAAACCGCTGTAGTTTTTCTGGAACTTAAGGAACAGCCTAAGATCAAAACAAACCTGGACAATCTTTACCCTTGTTGCAAATTCCATAGAAGTGGGTTACTTTTTTTTTGAATCCGCTTTTGATGATATGTTGGTTTCAGTTGAAGTTTCGTCATGTTTGAATAACTATATGAATTCATACGAGGACATATCTAAATGCCTCTCAAATATTGTGACGCAAGATAAAAAATGCCTCAGTCAACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAACGCCATGGTACTACGAATGGCTYCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATATGCTATTGTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTCCGAGCCAAACACGACAGCGGACTGATGCGTTTGATTTATTATTAATCTTGTTCTTGTAGTTCCTGTTGATGTTAATTTAAATAAATTGTTAAACCTGTATTAGAAAGGCTCCTTCAAAGAAAGGGTCCTCTAATAGAAGGGCCTTTCGAGAGGAACTTATAATCATTGAACGTCTCCTTTCAGAATGAGTTGTTTGATTTTGGTGAAATTGATAGATTTTGAAAAATATATGAGTCCCCTCTAATTGAAGGACACCTGTAATAAAAGGGCCCTCCGGAGGTACCGTGGACGTCCCTTACAACGCCTCGTACGTGGGTGAAACTTCTGACCCACAAACTGCATTTTACCATATTTTACAGAGAATATGAATTTGATAAACTTATAAAACACTTGGTTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>456 196 195 109 44</canonical_bands>
                <polymorphic_bands>456 240 195 109</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>498 212 144 118 16 12</canonical_bands>
                <polymorphic_bands>710 144 118 16 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAATTCATACGAGGACATATCTA</pcr_primer_p1>
		<pcr_primer_p2>GAAGTAGACACCCTCCTGTACTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TGAATTCATACGAGGACATATCTAAATGCCTCTCAAATATTGTGACGCAAGATAAAAAATGCCTCAGTCAACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAACGCCATGGTACTACGAATGGCTCCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATATGCTATTGTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTC</canonical_amplicon>
		<polymorphic_amplicon>TGAATTCATACGAGGACATATCTAAATGCCTCTCAAATATTGTGACGCAAGATAAAAAATGCCTCAGTCAACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAACGCCATGGTACTACGAATGGCTYCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATATGCTATTGTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3132</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>884778</contig_pos>
        <strand>+</strand>
        <context>AAAATCAAAC[A/G]CCATGGTACT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAAC</left_flank>
        <right_flank>CCATGGTACTACGAATGGCTCCGCTATATGCTTGAAATATCATGCTATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGTGAATATGCGTATTCCATAGCAAATCTCACAGGTTTTTATTTAGATGTATTATCTAGAGAGTGTTATTAAACCTCCTTTCAGAATCCAGTTATAGCACATACTCCGAAAATAGTGAAGGAGCATTTACCAACTTTAACTACTACTATCCAATGAACAGTAAGATGATTTTGGGAAGAGGTAATTACAAGTGAAAATATAAATTTCAGAAACCGCTGTAGTTTTTCTGGAACTTAAGGAACAGCCTAAGATCAAAACAAACCTGGACAATCTTTACCCTTGTTGCAAATTCCATAGAAGTGGGTTACTTTTTTTTTGAATCCGCTTTTGATGATATGTTGGTTTCAGTTGAAGTTTCGTCATGTTTGAATAACTATATGAATTCATACGAGGACATATCTAAATGCCTCTCAAATATTGTGACGCAAGATAAAAAATGCCTCAGTCAACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAACGCCATGGTACTACGAATGGCTCCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATATGCTATTGTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTCCGAGCCAAACACGACAGCGGACTGATGCGTTTGATTTATTATTAATCTTGTTCTTGTAGTTCCTGTTGATGTTAATTTAAATAAATTGTTAAACCTGTATTAGAAAGGCTCCTTCAAAGAAAGGGTCCTCTAATAGAAGGGCCTTTCGAGAGGAACTTATAATCATTGAACGTCTCCTTTCAGAATGAGTTGTTTGATTTTGGTGAAATTGATAGATTTTGAAAAATATATGAGTCCCCTCTAATTGAAGGACACCTGTAATAAAAGGGCCCTCCGGAGGTACCGTGGACGTCCCTTACAACGCCTCGTACGTGGGTGAAACTTCTGACCCACAAACTGCATTTTACCATATTTTACAGAGAATATGAATTTGATAAA</canonical>
            <polymorphic>AAAAGTGAATATGCGTATTCCATAGCAAATCTCACAGGTTTTTATTTAGATGTATTATCTAGAGAGTGTTATTAAACCTCCTTTCAGAATCCAGTTATAGCACATACTCCGAAAATAGTGAAGGAGCATTTACCAACTTTAACTACTACTATCCAATGAACAGTAAGATGATTTTGGGAAGAGGTAATTACAAGTGAAAATATAAATTTCAGAAACCGCTGTAGTTTTTCTGGAACTTAAGGAACAGCCTAAGATCAAAACAAACCTGGACAATCTTTACCCTTGTTGCAAATTCCATAGAAGTGGGTTACTTTTTTTTTGAATCCGCTTTTGATGATATGTTGGTTTCAGTTGAAGTTTCGTCATGTTTGAATAACTATATGAATTCATACGAGGACATATCTAAATGCCTCTCAAATATTGTGACGCAAGATAAAAAATGCCTCAGTCAACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAACRCCATGGTACTACGAATGGCTCCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATATGCTATTGTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTCCGAGCCAAACACGACAGCGGACTGATGCGTTTGATTTATTATTAATCTTGTTCTTGTAGTTCCTGTTGATGTTAATTTAAATAAATTGTTAAACCTGTATTAGAAAGGCTCCTTCAAAGAAAGGGTCCTCTAATAGAAGGGCCTTTCGAGAGGAACTTATAATCATTGAACGTCTCCTTTCAGAATGAGTTGTTTGATTTTGGTGAAATTGATAGATTTTGAAAAATATATGAGTCCCCTCTAATTGAAGGACACCTGTAATAAAAGGGCCCTCCGGAGGTACCGTGGACGTCCCTTACAACGCCTCGTACGTGGGTGAAACTTCTGACCCACAAACTGCATTTTACCATATTTTACAGAGAATATGAATTTGATAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATTCATACGAGGACATATCTA</pcr_primer_p1>
		<pcr_primer_p2>GAAGTAGACACCCTCCTGTACTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TGAATTCATACGAGGACATATCTAAATGCCTCTCAAATATTGTGACGCAAGATAAAAAATGCCTCAGTCAACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAACGCCATGGTACTACGAATGGCTCCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATATGCTATTGTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTC</canonical_amplicon>
		<polymorphic_amplicon>TGAATTCATACGAGGACATATCTAAATGCCTCTCAAATATTGTGACGCAAGATAAAAAATGCCTCAGTCAACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAACRCCATGGTACTACGAATGGCTCCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATATGCTATTGTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3133</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>884713</contig_pos>
        <strand>+</strand>
        <context>GACGCAAGAT[A/G]AAAAATGCCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCATACGAGGACATATCTAAATGCCTCTCAAATATTGTGACGCAAGAT</left_flank>
        <right_flank>AAAAATGCCTCAGTCAACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTGAAAAGAAACAAGAAAGGTGCAGAAGAGTTCAAAGAAATCCTGATGGAGCTGAGTGACTGGAAAAGTGAATATGCGTATTCCATAGCAAATCTCACAGGTTTTTATTTAGATGTATTATCTAGAGAGTGTTATTAAACCTCCTTTCAGAATCCAGTTATAGCACATACTCCGAAAATAGTGAAGGAGCATTTACCAACTTTAACTACTACTATCCAATGAACAGTAAGATGATTTTGGGAAGAGGTAATTACAAGTGAAAATATAAATTTCAGAAACCGCTGTAGTTTTTCTGGAACTTAAGGAACAGCCTAAGATCAAAACAAACCTGGACAATCTTTACCCTTGTTGCAAATTCCATAGAAGTGGGTTACTTTTTTTTTGAATCCGCTTTTGATGATATGTTGGTTTCAGTTGAAGTTTCGTCATGTTTGAATAACTATATGAATTCATACGAGGACATATCTAAATGCCTCTCAAATATTGTGACGCAAGATAAAAAATGCCTCAGTCAACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAACGCCATGGTACTACGAATGGCTCCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATATGCTATTGTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTCCGAGCCAAACACGACAGCGGACTGATGCGTTTGATTTATTATTAATCTTGTTCTTGTAGTTCCTGTTGATGTTAATTTAAATAAATTGTTAAACCTGTATTAGAAAGGCTCCTTCAAAGAAAGGGTCCTCTAATAGAAGGGCCTTTCGAGAGGAACTTATAATCATTGAACGTCTCCTTTCAGAATGAGTTGTTTGATTTTGGTGAAATTGATAGATTTTGAAAAATATATGAGTCCCCTCTAATTGAAGGACACCTGTAATAAAAGGGCCCTCCGGAGGTACCGTGGACGTCCCTTACAACGCCTCGTACGT</canonical>
            <polymorphic>CACTGAAAAGAAACAAGAAAGGTGCAGAAGAGTTCAAAGAAATCCTGATGGAGCTGAGTGACTGGAAAAGTGAATATGCGTATTCCATAGCAAATCTCACAGGTTTTTATTTAGATGTATTATCTAGAGAGTGTTATTAAACCTCCTTTCAGAATCCAGTTATAGCACATACTCCGAAAATAGTGAAGGAGCATTTACCAACTTTAACTACTACTATCCAATGAACAGTAAGATGATTTTGGGAAGAGGTAATTACAAGTGAAAATATAAATTTCAGAAACCGCTGTAGTTTTTCTGGAACTTAAGGAACAGCCTAAGATCAAAACAAACCTGGACAATCTTTACCCTTGTTGCAAATTCCATAGAAGTGGGTTACTTTTTTTTTGAATCCGCTTTTGATGATATGTTGGTTTCAGTTGAAGTTTCGTCATGTTTGAATAACTATATGAATTCATACGAGGACATATCTAAATGCCTCTCAAATATTGTGACGCAAGATRAAAAATGCCTCAGTCAACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAACGCCATGGTACTACGAATGGCTCCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATATGCTATTGTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTCCGAGCCAAACACGACAGCGGACTGATGCGTTTGATTTATTATTAATCTTGTTCTTGTAGTTCCTGTTGATGTTAATTTAAATAAATTGTTAAACCTGTATTAGAAAGGCTCCTTCAAAGAAAGGGTCCTCTAATAGAAGGGCCTTTCGAGAGGAACTTATAATCATTGAACGTCTCCTTTCAGAATGAGTTGTTTGATTTTGGTGAAATTGATAGATTTTGAAAAATATATGAGTCCCCTCTAATTGAAGGACACCTGTAATAAAAGGGCCCTCCGGAGGTACCGTGGACGTCCCTTACAACGCCTCGTACGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATTCATACGAGGACATATCTA</pcr_primer_p1>
		<pcr_primer_p2>GAAGTAGACACCCTCCTGTACTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TGAATTCATACGAGGACATATCTAAATGCCTCTCAAATATTGTGACGCAAGATAAAAAATGCCTCAGTCAACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAACGCCATGGTACTACGAATGGCTCCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATATGCTATTGTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTC</canonical_amplicon>
		<polymorphic_amplicon>TGAATTCATACGAGGACATATCTAAATGCCTCTCAAATATTGTGACGCAAGATRAAAAATGCCTCAGTCAACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAACGCCATGGTACTACGAATGGCTCCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATATGCTATTGTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3134</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>884540</contig_pos>
        <strand>+</strand>
        <context>MGATCAAAAC[A/G]AACCTGGACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAACCGCTGTAGTTTTTCTGGAACTTAAGGAACAGCCTAAGATCAAAAC</left_flank>
        <right_flank>AACCTGGACAATCTTTACCCTTGTTGCAAATTCCATAGAAGTGGGTTACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTACACGCAACTTTGCAATGAACTTCAACCATGTCTGTGCAATTCAACGGGACTGTTATATGAACAGAAAAAAAAGAAAGACATGTGACCAGATGTTCAAGAACTCTATACATGTATCATTTATTTTGTGACTAATAGAATCTGGATAATTTTTGCAGGGAATAGTCAACTCACTGAAAAGAAACAAGAAAGGTGCAGAAGAGTTCAAAGAAATCCTGATGGAGCTGAGTGACTGGAAAAGTGAATATGCGTATTCCATAGCAAATCTCACAGGTTTTTATTTAGATGTATTATCTAGAGAGTGTTATTAAACCTCCTTTCAGAATCCAGTTATAGCACATACTCCGAAAATAGTGAAGGAGCATTTACCAACTTTAACTACTACTATCCAATGAACAGTAAGATGATTTTGGGAAGAGGTAATTACAAGTGAAAATATAAATTTCAGAAACCGCTGTAGTTTTTCTGGAACTTAAGGAACAGCCTAAGATCAAAACAAACCTGGACAATCTTTACCCTTGTTGCAAATTCCATAGAAGTGGGTTACTTTTTTTTTGAATCCGCTTTTGATGATATGTTGGTTTCAGTTGAAGTTTCGTCATGTTTGAATAACTATATGAATTCATACGAGGACATATCTAAATGCCTCTCAAATATTGTGACGCAAGATAAAAAATGCCTCAGTCAACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAACGCCATGGTACTACGAATGGCTCCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATATGCTATTGTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTCCGAGCCAAACACGACAGCGGACTGATGCGTTTGATTTATTATTAATCTTGTTCTTGTAGTTCCTGTTGATGTTAATTTAAATAAATTGTTAAACCTGTATTAGAAAGGCTCCTTCAAAGAAAGGGTCCTCTAATAGAAGG</canonical>
            <polymorphic>TGCTACACGCAACTTTGCAATGAACTTCAACCATGTCTGTGCAATTCAACGGGACTGTTATATGAACAGAAAAAAAAGAAAGACATGTGACCAGATGTTCAAGAACTCTATACATGTATCATTTATTTTGTGACTAATAGAATCTGGATAATTTTTGCAGGGAATAGTCAACTCACTGAAAAGAAACAAGAAAGGTGCAGAAGAGTTCAAAGAAATCCTGATGGAGCTGAGTGACTGGAAAAGTGAATATGCGTATTCCATAGCAAATCTCACAGGTTTTTATTTAGATGTATTATCTAGAGAGTGTTATTAAACCTCCTTTCAGAATCCAGTTATAGCACATACTCCGAAAATAGTGAAGGAGCATTTACCAACTTTAACTACTACTATCCAATGAACAGTAAGATGATTTTGGGAAGAGGTAATTACAAGTGAAAATATAAATTTCAGAAACCGCTGTAGTTTTTCTGGAACTTAAGGAACAGCCTAAGATCAAAACRAACCTGGACAATCTTTACCCTTGTTGCAAATTCCATAGAAGTGGGTTACTTTTTTTTTGAATCCGCTTTTGATGATATGTTGGTTTCAGTTGAAGTTTCGTCATGTTTGAATAACTATATGAATTCATACGAGGACATATCTAAATGCCTCTCAAATATTGTGACGCAAGATAAAAAATGCCTCAGTCAACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAACGCCATGGTACTACGAATGGCTCCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATATGCTATTGTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTCCGAGCCAAACACGACAGCGGACTGATGCGTTTGATTTATTATTAATCTTGTTCTTGTAGTTCCTGTTGATGTTAATTTAAATAAATTGTTAAACCTGTATTAGAAAGGCTCCTTCAAAGAAAGGGTCCTCTAATAGAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATAGTGAAGGAGCATTTACC</pcr_primer_p1>
		<pcr_primer_p2>AAACTTCAACTGAAACCAACATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAATAGTGAAGGAGCATTTACCAACTTTAACTACTACTATCCAATGAACAGTAAGATGATTTTGGGAAGAGGTAATTACAAGTGAAAATATAAATTTCAGAAACCGCTGTAGTTTTTCTGGAACTTAAGGAACAGCCTAAGATCAAAACAAACCTGGACAATCTTTACCCTTGTTGCAAATTCCATAGAAGTGGGTTACTTTTTTTTTGAATCCGCTTTTGATGATATGTTGGTTTCAGTTGAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAATAGTGAAGGAGCATTTACCAACTTTAACTACTACTATCCAATGAACAGTAAGATGATTTTGGGAAGAGGTAATTACAAGTGAAAATATAAATTTCAGAAACCGCTGTAGTTTTTCTGGAACTTAAGGAACAGCCTAAGATCAAAACRAACCTGGACAATCTTTACCCTTGTTGCAAATTCCATAGAAGTGGGTTACTTTTTTTTTGAATCCGCTTTTGATGATATGTTGGTTTCAGTTGAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3135</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>884530</contig_pos>
        <strand>+</strand>
        <context>GAACAGCCTA[A/C]GATCAAAACR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATAAATTTCAGAAACCGCTGTAGTTTTTCTGGAACTTAAGGAACAGCCTA</left_flank>
        <right_flank>GATCAAAACAAACCTGGACAATCTTTACCCTTGTTGCAAATTCCATAGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGCTAGTATTGCTACACGCAACTTTGCAATGAACTTCAACCATGTCTGTGCAATTCAACGGGACTGTTATATGAACAGAAAAAAAAGAAAGACATGTGACCAGATGTTCAAGAACTCTATACATGTATCATTTATTTTGTGACTAATAGAATCTGGATAATTTTTGCAGGGAATAGTCAACTCACTGAAAAGAAACAAGAAAGGTGCAGAAGAGTTCAAAGAAATCCTGATGGAGCTGAGTGACTGGAAAAGTGAATATGCGTATTCCATAGCAAATCTCACAGGTTTTTATTTAGATGTATTATCTAGAGAGTGTTATTAAACCTCCTTTCAGAATCCAGTTATAGCACATACTCCGAAAATAGTGAAGGAGCATTTACCAACTTTAACTACTACTATCCAATGAACAGTAAGATGATTTTGGGAAGAGGTAATTACAAGTGAAAATATAAATTTCAGAAACCGCTGTAGTTTTTCTGGAACTTAAGGAACAGCCTAAGATCAAAACAAACCTGGACAATCTTTACCCTTGTTGCAAATTCCATAGAAGTGGGTTACTTTTTTTTTGAATCCGCTTTTGATGATATGTTGGTTTCAGTTGAAGTTTCGTCATGTTTGAATAACTATATGAATTCATACGAGGACATATCTAAATGCCTCTCAAATATTGTGACGCAAGATAAAAAATGCCTCAGTCAACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAACGCCATGGTACTACGAATGGCTCCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATATGCTATTGTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTCCGAGCCAAACACGACAGCGGACTGATGCGTTTGATTTATTATTAATCTTGTTCTTGTAGTTCCTGTTGATGTTAATTTAAATAAATTGTTAAACCTGTATTAGAAAGGCTCCTTCAAAGAAAGGGTCCTC</canonical>
            <polymorphic>ACGCTAGTATTGCTACACGCAACTTTGCAATGAACTTCAACCATGTCTGTGCAATTCAACGGGACTGTTATATGAACAGAAAAAAAAGAAAGACATGTGACCAGATGTTCAAGAACTCTATACATGTATCATTTATTTTGTGACTAATAGAATCTGGATAATTTTTGCAGGGAATAGTCAACTCACTGAAAAGAAACAAGAAAGGTGCAGAAGAGTTCAAAGAAATCCTGATGGAGCTGAGTGACTGGAAAAGTGAATATGCGTATTCCATAGCAAATCTCACAGGTTTTTATTTAGATGTATTATCTAGAGAGTGTTATTAAACCTCCTTTCAGAATCCAGTTATAGCACATACTCCGAAAATAGTGAAGGAGCATTTACCAACTTTAACTACTACTATCCAATGAACAGTAAGATGATTTTGGGAAGAGGTAATTACAAGTGAAAATATAAATTTCAGAAACCGCTGTAGTTTTTCTGGAACTTAAGGAACAGCCTAMGATCAAAACAAACCTGGACAATCTTTACCCTTGTTGCAAATTCCATAGAAGTGGGTTACTTTTTTTTTGAATCCGCTTTTGATGATATGTTGGTTTCAGTTGAAGTTTCGTCATGTTTGAATAACTATATGAATTCATACGAGGACATATCTAAATGCCTCTCAAATATTGTGACGCAAGATAAAAAATGCCTCAGTCAACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAACGCCATGGTACTACGAATGGCTCCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATATGCTATTGTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTCCGAGCCAAACACGACAGCGGACTGATGCGTTTGATTTATTATTAATCTTGTTCTTGTAGTTCCTGTTGATGTTAATTTAAATAAATTGTTAAACCTGTATTAGAAAGGCTCCTTCAAAGAAAGGGTCCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>308 260 237 195</canonical_bands>
                <polymorphic_bands>455 308 237</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATAGTGAAGGAGCATTTACC</pcr_primer_p1>
		<pcr_primer_p2>AAACTTCAACTGAAACCAACATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAATAGTGAAGGAGCATTTACCAACTTTAACTACTACTATCCAATGAACAGTAAGATGATTTTGGGAAGAGGTAATTACAAGTGAAAATATAAATTTCAGAAACCGCTGTAGTTTTTCTGGAACTTAAGGAACAGCCTAAGATCAAAACAAACCTGGACAATCTTTACCCTTGTTGCAAATTCCATAGAAGTGGGTTACTTTTTTTTTGAATCCGCTTTTGATGATATGTTGGTTTCAGTTGAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAATAGTGAAGGAGCATTTACCAACTTTAACTACTACTATCCAATGAACAGTAAGATGATTTTGGGAAGAGGTAATTACAAGTGAAAATATAAATTTCAGAAACCGCTGTAGTTTTTCTGGAACTTAAGGAACAGCCTAMGATCAAAACAAACCTGGACAATCTTTACCCTTGTTGCAAATTCCATAGAAGTGGGTTACTTTTTTTTTGAATCCGCTTTTGATGATATGTTGGTTTCAGTTGAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3136</snp_id>
        <super_contig>c001200895.Contig2</super_contig>
        <contig_pos>33043</contig_pos>
        <strand>+</strand>
        <context>GGAGTGGCAA[G/T]GCAGTTCTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAAAATGATACTTGAAAAAAATGAATTATCAACAAACCTGGAGTGGCAA</left_flank>
        <right_flank>GCAGTTCTGAGTACCCGTCTCCAACGTGATCTTTGTCTGCGGAGTTGTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGTCATCCATTCCTGAATAATTGCTTTTGATGTTTTCCCTTATCCTTTCGTGCTGCAGTAATAACAATGGTTATTTTTTTAAAAATTCATTAAACGAAATAATAAAAAATTAAAATATAAAGAAAATAACATATTTACAAAACAAAGTCGTTCTCGAATTGAAAAAAAAAACATCGGAATCTATTCATGTTATGCAAGTGATGAAAAACCAACGGGGATGTGTCTGTGTGTGTGTTTGGCAGGTTTAAATGAACATTTGATTGGAAAAAAATAGGTTGAGATAAATGAATAAAATAACAATTAGAATGGCGGTGGCCCATTTACAAATTCTAGCGATGGGTCAAAACTTTTAGCGAAGTTATTGAGAAGTTGACAACAGTACTCGTCGTCACAGTGGGGAACCAAACAAGCAGCTCCCATAAGCAGAACCAGCAGAGCCTGAAACGAGAAAAATGATACTTGAAAAAAATGAATTATCAACAAACCTGGAGTGGCAAGGCAGTTCTGAGTACCCGTCTCCAACGTGATCTTTGTCTGCGGAGTTGTTCTTCATTGAGAGTCGAATCATCAGGAATTGGGGAAAGTAGTCCATCTGATCGACTATCAAGAGAGTCAAATTCACTTCTTGATTCGGAATCCGACGGCACGTCTTCAAAACCAATGTTTCGAAGAACATTGTTCGGATGTTCATCTGGGTAAAGTGCAGAAAGCACTTCGGCCGCGGCTCTGACATCATACGGCTTCTCTTCGCTTCCTTTCTCTTCGTCTTCATCTTCATCTTCATTGTCATGGTCTGGCTGAGAGACATCTAGTCGTGGCTCAATTTCCTTGAGAAGACGTTTTGCTTCAGCAAGAAGTTGTTCAAGATCTGTCGAAGTGCTGCTTTCAACAAATTTGCGGTCCTTCTCGCTTCTGGCGACAACAACCTTCTGGTTTTCGAGATGAGCAATGGCATCATTGAGCATTGTAGCGCGGCTCTGGAAAACGTTTTTATGAAT</canonical>
            <polymorphic>GATGTCATCCATTCCTGAATAATTGCTTTTGATGTTTTCCCTTATCCTTTCGTGCTGCAGTAATAACAATGGTTATTTTTTTAAAAATTCATTAAACGAAATAATAAAAAATTAAAATATAAAGAAAATAACATATTTACAAAACAAAGTCGTTCTCGAATTGAAAAAAAAAACATCGGAATCTATTCATGTTATGCAAGTGATGAAAAACCAACGGGGATGTGTCTGTGTGTGTGTTTGGCAGGTTTAAATGAACATTTGATTGGAAAAAAATAGGTTGAGATAAATGAATAAAATAACAATTAGAATGGCGGTGGCCCATTTACAAATTCTAGCGATGGGTCAAAACTTTTAGCGAAGTTATTGAGAAGTTGACAACAGTACTCGTCGTCACAGTGGGGAACCAAACAAGCAGCTCCCATAAGCAGAACCAGCAGAGCCTGAAACGAGAAAAATGATACTTGAAAAAAATGAATTATCAACAAACCTGGAGTGGCAAKGCAGTTCTGAGTACCCGTCTCCAACGTGATCTTTGTCTGCGGAGTTGTTCTTCATTGAGAGTCGAATCATCAGGAATTGGGGAAAGTAGTCCATCTGATCGACTATCAAGAGAGTCAAATTCACTTCTTGATTCGGAATCCGACGGCACGTCTTCAAAACCAATGTTTCGAAGAACATTGTTCGGATGTTCATCTGGGTAAAGTGCAGAAAGCACTTCGGCCGCGGCTCTGACATCATACGGCTTCTCTTCGCTTCCTTTCTCTTCGTCTTCATCTTCATCTTCATTGTCATGGTCTGGCTGAGAGACATCTAGTCGTGGCTCAATTTCCTTGAGAAGACGTTTTGCTTCAGCAAGAAGTTGTTCAAGATCTGTCGAAGTGCTGCTTTCAACAAATTTGCGGTCCTTCTCGCTTCTGGCGACAACAACCTTCTGGTTTTCGAGATGAGCAATGGCATCATTGAGCATTGTAGCGCGGCTCTGGAAAACGTTTTTATGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGAAAAATGATACTTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAGATGAACATCCGAACAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGAGAAAAATGATACTTGAAAAAAATGAATTATCAACAAACCTGGAGTGGCAAGGCAGTTCTGAGTACCCGTCTCCAACGTGATCTTTGTCTGCGGAGTTGTTCTTCATTGAGAGTCGAATCATCAGGAATTGGGGAAAGTAGTCCATCTGATCGACTATCAAGAGAGTCAAATTCACTTCTTGATTCGGAATCCGACGGCACGTCTTCAAAACCAATGTTTCGAAGAACATTGTTCGGATGTTCATCTG</canonical_amplicon>
		<polymorphic_amplicon>CGAGAAAAATGATACTTGAAAAAAATGAATTATCAACAAACCTGGAGTGGCAAKGCAGTTCTGAGTACCCGTCTCCAACGTGATCTTTGTCTGCGGAGTTGTTCTTCATTGAGAGTCGAATCATCAGGAATTGGGGAAAGTAGTCCATCTGATCGACTATCAAGAGAGTCAAATTCACTTCTTGATTCGGAATCCGACGGCACGTCTTCAAAACCAATGTTTCGAAGAACATTGTTCGGATGTTCATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3137</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>9780</contig_pos>
        <strand>+</strand>
        <context>ATGATAACGC[A/G]AAAACCGATG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGC</left_flank>
        <right_flank>AAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACCGTAATCCGTTCAAAATTTTTAAAATTCTAAATCTGGCTCTCTAGACGGATTACTGTAGCTTTCTACAAGTCAGCTAGAACTAGACAAGAAATATGAAATGAGAAAATTATGGTACTGTAGACAATTCGAAAATTTTTAAAATAAAGGAAATTCTCTAAAATACTTTTGAAATCTCAAAAATTGAAGAACCTACTCAATGGATGATGAAAAAAGCAAAAAGGACAAAGAAATGACGGATTATGACTATGCTGGGGAACAGGATGCTTTACCGGACACACGAAAAAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTAGATCAACGTCCACTTCCACTGATTTACATCCTCCAAAAATTGATCCTCGTTTGGATTTCGGACCACTTCCACCGAATTTTCAACGCCGAATTGACAGTAATCATATTCCTGATATCAGTGATAATGATAATGGAGATGATGATCTACCAATGACTACAATGGTTACTTTAACCAATACTCAAATCATTCCGTTATCTGGAGAAGAAAGTGGAGTTGTTAAGTGAGTCTTGGGAGGGTTTGGGGCACTTGTAGTTTATAGTCTTTGTAGTCAGTGTAGTTCTCTTTTCAGCATACTTGGGAANNNNNNNNNNNGGGCCTTCGCGGGCCCTGCCATAACTTTTTTCAGAATCAATGTTTTCGAACCAACTCAATTAGATATGATAAAGATTCACGAGTACTACAAAACGGTATAATTTGGAATACTGTATCATATCTGATTTAGTTGGTT</canonical>
            <polymorphic>TACCGTAATCCGTTCAAAATTTTTAAAATTCTAAATCTGGCTCTCTAGACGGATTACTGTAGCTTTCTACAAGTCAGCTAGAACTAGACAAGAAATATGAAATGAGAAAATTATGGTACTGTAGACAATTCGAAAATTTTTAAAATAAAGGAAATTCTCTAAAATACTTTTGAAATCTCAAAAATTGAAGAACCTACTCAATGGATGATGAAAAAAGCAAAAAGGACAAAGAAATGACGGATTATGACTATGCTGGGGAACAGGATGCTTTACCGGACACACGAAAAAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCRAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTAGATCAACGTCCACTTCCACTGATTTACATCCTCCAAAAATTGATCCTCGTTTGGATTTCGGACCACTTCCACCGAATTTTCAACGCCGAATTGACAGTAATCATATTCCTGATATCAGTGATAATGATAATGGAGATGATGATCTACCAATGACTACAATGGTTACTTTAACCAATACTCAAATCATTCCGTTATCTGGAGAAGAAAGTGGAGTTGTTAAGTGAGTCTTGGGAGGGTTTGGGGCACTTGTAGTTTATAGTCTTTGTAGTCAGTGTAGTTCTCTTTTCAGCATACTTGGGAANNNNNNNNNNNGGGCCTTCGCGGGCCCTGCCATAACTTTTTTCAGAATCAATGTTTTCGAACCAACTCAATTAGATATGATAAAGATTCACGAGTACTACAAAACGGTATAATTTGGAATACTGTATCATATCTGATTTAGTTGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>498 375 127</canonical_bands>
                <polymorphic_bands>873 127</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGAGAATGGTTCATTAGTGAGT</pcr_primer_p1>
		<pcr_primer_p2>TACCGTATAACGGCTTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>266</pcr_amplicon_size>
		<canonical_amplicon>AAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTA</canonical_amplicon>
		<polymorphic_amplicon>AAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCRAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3138</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>9792</contig_pos>
        <strand>+</strand>
        <context>AAACCGATGT[A/G]ATCAACAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGT</left_flank>
        <right_flank>ATCAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTAGATCAACGTC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAAAATTTTTAAAATTCTAAATCTGGCTCTCTAGACGGATTACTGTAGCTTTCTACAAGTCAGCTAGAACTAGACAAGAAATATGAAATGAGAAAATTATGGTACTGTAGACAATTCGAAAATTTTTAAAATAAAGGAAATTCTCTAAAATACTTTTGAAATCTCAAAAATTGAAGAACCTACTCAATGGATGATGAAAAAAGCAAAAAGGACAAAGAAATGACGGATTATGACTATGCTGGGGAACAGGATGCTTTACCGGACACACGAAAAAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTAGATCAACGTCCACTTCCACTGATTTACATCCTCCAAAAATTGATCCTCGTTTGGATTTCGGACCACTTCCACCGAATTTTCAACGCCGAATTGACAGTAATCATATTCCTGATATCAGTGATAATGATAATGGAGATGATGATCTACCAATGACTACAATGGTTACTTTAACCAATACTCAAATCATTCCGTTATCTGGAGAAGAAAGTGGAGTTGTTAAGTGAGTCTTGGGAGGGTTTGGGGCACTTGTAGTTTATAGTCTTTGTAGTCAGTGTAGTTCTCTTTTCAGCATACTTGGGAANNNNNNNNNNNGGGCCTTCGCGGGCCCTGCCATAACTTTTTTCAGAATCAATGTTTTCGAACCAACTCAATTAGATATGATAAAGATTCACGAGTACTACAAAACGGTATAATTTGGAATACTGTATCATATCTGATTTAGTTGGTTCGAAAATATTGA</canonical>
            <polymorphic>TTCAAAATTTTTAAAATTCTAAATCTGGCTCTCTAGACGGATTACTGTAGCTTTCTACAAGTCAGCTAGAACTAGACAAGAAATATGAAATGAGAAAATTATGGTACTGTAGACAATTCGAAAATTTTTAAAATAAAGGAAATTCTCTAAAATACTTTTGAAATCTCAAAAATTGAAGAACCTACTCAATGGATGATGAAAAAAGCAAAAAGGACAAAGAAATGACGGATTATGACTATGCTGGGGAACAGGATGCTTTACCGGACACACGAAAAAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTRATCAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTAGATCAACGTCCACTTCCACTGATTTACATCCTCCAAAAATTGATCCTCGTTTGGATTTCGGACCACTTCCACCGAATTTTCAACGCCGAATTGACAGTAATCATATTCCTGATATCAGTGATAATGATAATGGAGATGATGATCTACCAATGACTACAATGGTTACTTTAACCAATACTCAAATCATTCCGTTATCTGGAGAAGAAAGTGGAGTTGTTAAGTGAGTCTTGGGAGGGTTTGGGGCACTTGTAGTTTATAGTCTTTGTAGTCAGTGTAGTTCTCTTTTCAGCATACTTGGGAANNNNNNNNNNNGGGCCTTCGCGGGCCCTGCCATAACTTTTTTCAGAATCAATGTTTTCGAACCAACTCAATTAGATATGATAAAGATTCACGAGTACTACAAAACGGTATAATTTGGAATACTGTATCATATCTGATTTAGTTGGTTCGAAAATATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>499 320 99 41 41</canonical_bands>
                <polymorphic_bands>540 320 99 41</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>267 205 117 90 69 52 49 47 29 26 22 13 6 6 2</canonical_bands>
                <polymorphic_bands>267 257 117 90 69 49 47 29 26 22 13 6 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGAGAATGGTTCATTAGTGAGT</pcr_primer_p1>
		<pcr_primer_p2>TGGACGTTGATCTACCGTAT</pcr_primer_p2>
		<pcr_amplicon_size>278</pcr_amplicon_size>
		<canonical_amplicon>AAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTAGATCAACGTCCA</canonical_amplicon>
		<polymorphic_amplicon>AAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTRATCAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTAGATCAACGTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3139</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>9942</contig_pos>
        <strand>+</strand>
        <context>ATCATATTCC[C/T]GATATCAGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGACCACTTCCACCGAATTTTCAACGCCGAATTGACAGTAATCATATTCC</left_flank>
        <right_flank>GATATCAGTGATAATGATAATGGAGATGATGATCTACCAATGACTACAAT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATACTTTTGAAATCTCAAAAATTGAAGAACCTACTCAATGGATGATGAAAAAAGCAAAAAGGACAAAGAAATGACGGATTATGACTATGCTGGGGAACAGGATGCTTTACCGGACACACGAAAAAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTAGATCAACGTCCACTTCCACTGATTTACATCCTCCAAAAATTGATCCTCGTTTGGATTTCGGACCACTTCCACCGAATTTTCAACGCCGAATTGACAGTAATCATATTCCTGATATCAGTGATAATGATAATGGAGATGATGATCTACCAATGACTACAATGGTTACTTTAACCAATACTCAAATCATTCCGTTATCTGGAGAAGAAAGTGGAGTTGTTAAGTGAGTCTTGGGAGGGTTTGGGGCACTTGTAGTTTATAGTCTTTGTAGTCAGTGTAGTTCTCTTTTCAGCATACTTGGGAANNNNNNNNNNNGGGCCTTCGCGGGCCCTGCCATAACTTTTTTCAGAATCAATGTTTTCGAACCAACTCAATTAGATATGATAAAGATTCACGAGTACTACAAAACGGTATAATTTGGAATACTGTATCATATCTGATTTAGTTGGTTCGAAAATATTGATTCTGAAAGAAATTATGGCAGGGTCCGCCAAGGCCCAGCAAAGGCCCAGATTACAAGTATGCATTTCAGCCAATTCCAAAGAAAGCATTTTTCAGAATGAAAACCATTCGAAATCGTGTCGAAAAAGTTGGCTCCGACGAGGAGCAATTC</canonical>
            <polymorphic>AATACTTTTGAAATCTCAAAAATTGAAGAACCTACTCAATGGATGATGAAAAAAGCAAAAAGGACAAAGAAATGACGGATTATGACTATGCTGGGGAACAGGATGCTTTACCGGACACACGAAAAAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTAGATCAACGTCCACTTCCACTGATTTACATCCTCCAAAAATTGATCCTCGTTTGGATTTCGGACCACTTCCACCGAATTTTCAACGCCGAATTGACAGTAATCATATTCCYGATATCAGTGATAATGATAATGGAGATGATGATCTACCAATGACTACAATGGTTACTTTAACCAATACTCAAATCATTCCGTTATCTGGAGAAGAAAGTGGAGTTGTTAAGTGAGTCTTGGGAGGGTTTGGGGCACTTGTAGTTTATAGTCTTTGTAGTCAGTGTAGTTCTCTTTTCAGCATACTTGGGAANNNNNNNNNNNGGGCCTTCGCGGGCCCTGCCATAACTTTTTTCAGAATCAATGTTTTCGAACCAACTCAATTAGATATGATAAAGATTCACGAGTACTACAAAACGGTATAATTTGGAATACTGTATCATATCTGATTTAGTTGGTTCGAAAATATTGATTCTGAAAGAAATTATGGCAGGGTCCGCCAAGGCCCAGCAAAGGCCCAGATTACAAGTATGCATTTCAGCCAATTCCAAAGAAAGCATTTTTCAGAATGAAAACCATTCGAAATCGTGTCGAAAAAGTTGGCTCCGACGAGGAGCAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACAAAGAAAAGAAGAAAAAGA</pcr_primer_p1>
		<pcr_primer_p2>TCCACTTTCTTCTCCAGATAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTAGATCAACGTCCACTTCCACTGATTTACATCCTCCAAAAATTGATCCTCGTTTGGATTTCGGACCACTTCCACCGAATTTTCAACGCCGAATTGACAGTAATCATATTCCTGATATCAGTGATAATGATAATGGAGATGATGATCTACCAATGACTACAATGGTTACTTTAACCAATACTCAAATCATTCCGTTATCTGGAGAAGAAAGTGGA</canonical_amplicon>
		<polymorphic_amplicon>CAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTAGATCAACGTCCACTTCCACTGATTTACATCCTCCAAAAATTGATCCTCGTTTGGATTTCGGACCACTTCCACCGAATTTTCAACGCCGAATTGACAGTAATCATATTCCYGATATCAGTGATAATGATAATGGAGATGATGATCTACCAATGACTACAATGGTTACTTTAACCAATACTCAAATCATTCCGTTATCTGGAGAAGAAAGTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3140</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>12687</contig_pos>
        <strand>+</strand>
        <context>TTAATTCCTT[C/T]ATTCAATTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTT</left_flank>
        <right_flank>ATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAGTTTCAAGATATTTTTTACTGAAAATCCTTGAAGCTGTCATGAACCATTATGTCTTTGAATTTGTAGCCTATTCCACTAGCTGGCCATGTAACGTAAATTGAAATGACAAGAACTAATAAGTTAGAATTTTCGACTTTTTTAAATAACACCTAGAAACACCGTAATACCTGTAATAGAGGAGCACCCTAACTTTGTCCCGTTTTTTTTGGTTCCTGTAAAAGATATCGAAAAGATATCAACTGATAAAACATTGATCATAATATCAAAAATATTTTG</canonical>
            <polymorphic>TAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTYATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAGTTTCAAGATATTTTTTACTGAAAATCCTTGAAGCTGTCATGAACCATTATGTCTTTGAATTTGTAGCCTATTCCACTAGCTGGCCATGTAACGTAAATTGAAATGACAAGAACTAATAAGTTAGAATTTTCGACTTTTTTAAATAACACCTAGAAACACCGTAATACCTGTAATAGAGGAGCACCCTAACTTTGTCCCGTTTTTTTTGGTTCCTGTAAAAGATATCGAAAAGATATCAACTGATAAAACATTGATCATAATATCAAAAATATTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTAATTACCTTGCAAATGTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTGCTATAAAAGGTTGAAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAA</canonical_amplicon>
		<polymorphic_amplicon>ACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTYATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3141</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>12650</contig_pos>
        <strand>+</strand>
        <context>TGGTTTTTTC[C/T]TCAATTCCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTC</left_flank>
        <right_flank>TCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAGTTTCAAGATATTTTTTACTGAAAATCCTTGAAGCTGTCATGAACCATTATGTCTTTGAATTTGTAGCCTATTCCACTAGCTGGCCATGTAACGTAAATTGAAATGACAAGAACTAATAAGTTAGAATTTTCGACTTTTTTAAATAACACCTAGAAACACCGTAATACCTGTAATAGAGGAGCACCCTAACTTTGTCCCGTTTTTTTTGGTTCCTGTAAAAGATATCGAAAAGATATCAA</canonical>
            <polymorphic>TGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCYTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAGTTTCAAGATATTTTTTACTGAAAATCCTTGAAGCTGTCATGAACCATTATGTCTTTGAATTTGTAGCCTATTCCACTAGCTGGCCATGTAACGTAAATTGAAATGACAAGAACTAATAAGTTAGAATTTTCGACTTTTTTAAATAACACCTAGAAACACCGTAATACCTGTAATAGAGGAGCACCCTAACTTTGTCCCGTTTTTTTTGGTTCCTGTAAAAGATATCGAAAAGATATCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTAATTACCTTGCAAATGTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTGCTATAAAAGGTTGAAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAA</canonical_amplicon>
		<polymorphic_amplicon>ACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCYTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3142</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>12615</contig_pos>
        <strand>+</strand>
        <context>CACAAATATT[G/T]TCGTCCATCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATT</left_flank>
        <right_flank>TCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAGTTTCAAGATATTTTTTACTGAAAATCCTTGAAGCTGTCATGAACCATTATGTCTTTGAATTTGTAGCCTATTCCACTAGCTGGCCATGTAACGTAAATTGAAATGACAAGAACTAATAAGTTAGAATTTTCGACTTTTTTAAATAACACCTAGAAACACCGTAATACCTGTAATAGAGGAGCACCCTAACTTTGTCCCGTTTTT</canonical>
            <polymorphic>GTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTKTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAGTTTCAAGATATTTTTTACTGAAAATCCTTGAAGCTGTCATGAACCATTATGTCTTTGAATTTGTAGCCTATTCCACTAGCTGGCCATGTAACGTAAATTGAAATGACAAGAACTAATAAGTTAGAATTTTCGACTTTTTTAAATAACACCTAGAAACACCGTAATACCTGTAATAGAGGAGCACCCTAACTTTGTCCCGTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCATAAGGAACAGGATCACAT</pcr_primer_p1>
		<pcr_primer_p2>TTCAATCGTGATGCTCAATA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAA</canonical_amplicon>
		<polymorphic_amplicon>ATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTKTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3143</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>12560</contig_pos>
        <strand>+</strand>
        <context>TTGAACCAAT[C/T]GTATCTAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAAT</left_flank>
        <right_flank>GTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAGTTTCAAGATATTTTTTACTGAAAATCCTTGAAGCTGTCATGAACCATTATGTCTTTGAATTTGTAGCCTATTCCACTAGCTGGCCATGTAACGTAAATTGAAATGACAAGAACTAATAAGTTAGAATTTTCGACTTTTTTAAATAACAC</canonical>
            <polymorphic>TGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATYGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAGTTTCAAGATATTTTTTACTGAAAATCCTTGAAGCTGTCATGAACCATTATGTCTTTGAATTTGTAGCCTATTCCACTAGCTGGCCATGTAACGTAAATTGAAATGACAAGAACTAATAAGTTAGAATTTTCGACTTTTTTAAATAACAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>201 149 141 112 76 65 57 38 29 26 25 19 17 16 13 12 4</canonical_bands>
                <polymorphic_bands>201 149 141 112 84 76 57 38 29 26 25 17 16 13 12 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCATAAGGAACAGGATCACAT</pcr_primer_p1>
		<pcr_primer_p2>TTCAATCGTGATGCTCAATA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAA</canonical_amplicon>
		<polymorphic_amplicon>ATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATYGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3144</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>12544</contig_pos>
        <strand>+</strand>
        <context>AATCSGGCAC[G/T]CATTCTTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCAC</left_flank>
        <right_flank>CATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAGTTTCAAGATATTTTTTACTGAAAATCCTTGAAGCTGTCATGAACCATTATGTCTTTGAATTTGTAGCCTATTCCACTAGCTGGCCATGTAACGTAAATTGAAATGACAAGAACTAATAAGTTAGAATTTTCGA</canonical>
            <polymorphic>GAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACKCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAGTTTCAAGATATTTTTTACTGAAAATCCTTGAAGCTGTCATGAACCATTATGTCTTTGAATTTGTAGCCTATTCCACTAGCTGGCCATGTAACGTAAATTGAAATGACAAGAACTAATAAGTTAGAATTTTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCATATTTTATGTCACTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CGAAACATTTGCAAGGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCG</canonical_amplicon>
		<polymorphic_amplicon>TTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACKCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3145</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>12538</contig_pos>
        <strand>+</strand>
        <context>CGCACGAATC[C/G]GGCACKCATT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATC</left_flank>
        <right_flank>GGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAGTTTCAAGATATTTTTTACTGAAAATCCTTGAAGCTGTCATGAACCATTATGTCTTTGAATTTGTAGCCTATTCCACTAGCTGGCCATGTAACGTAAATTGAAATGACAAGAACTAATAAGTTAGAAT</canonical>
            <polymorphic>CTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCSGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAGTTTCAAGATATTTTTTACTGAAAATCCTTGAAGCTGTCATGAACCATTATGTCTTTGAATTTGTAGCCTATTCCACTAGCTGGCCATGTAACGTAAATTGAAATGACAAGAACTAATAAGTTAGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>496 493 11</canonical_bands>
                <polymorphic_bands>989 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCATATTTTATGTCACTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>GAAACATTTGCAAGGTAATTAGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCSGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3151</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>12451</contig_pos>
        <strand>+</strand>
        <context>MTYTCCGACG[A/T]TTTTATGGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACG</left_flank>
        <right_flank>TTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCAAACTTCATTAATGAAAACCATTTTTATTGCTATGCAATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAGTTTCAAGATATTTTTTACTGAAAATCCTTGAAGCTGTCAT</canonical>
            <polymorphic>TTTTCAAACTTCATTAATGAAAACCATTTTTATTGCTATGCAATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGWTTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAGTTTCAAGATATTTTTTACTGAAAATCCTTGAAGCTGTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCATATTTTATGTCACTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>GAAACATTTGCAAGGTAATTAGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGWTTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3152</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>12443</contig_pos>
        <strand>+</strand>
        <context>GGTTTACAMT[C/T]TCCGACGWTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAAT</left_flank>
        <right_flank>TCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTAATTTTTTTCAAACTTCATTAATGAAAACCATTTTTATTGCTATGCAATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAGTTTCAAGATATTTTTTACTGAAAATCCTTGAA</canonical>
            <polymorphic>ACTAATTTTTTTCAAACTTCATTAATGAAAACCATTTTTATTGCTATGCAATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATYTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAGTTTCAAGATATTTTTTACTGAAAATCCTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCATATTTTATGTCACTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>GAAACATTTGCAAGGTAATTAGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATYTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3153</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>12441</contig_pos>
        <strand>+</strand>
        <context>CAGGTTTACA[A/C]TYTCCGACGW</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACA</left_flank>
        <right_flank>TCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACTAATTTTTTTCAAACTTCATTAATGAAAACCATTTTTATTGCTATGCAATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAGTTTCAAGATATTTTTTACTGAAAATCCTTG</canonical>
            <polymorphic>AGACTAATTTTTTTCAAACTTCATTAATGAAAACCATTTTTATTGCTATGCAATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAMTCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAGTTTCAAGATATTTTTTACTGAAAATCCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCATATTTTATGTCACTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>GAAACATTTGCAAGGTAATTAGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAMTCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3154</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>12422</contig_pos>
        <strand>+</strand>
        <context>YTGAATGCCT[C/T]CTCAGCAGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCT</left_flank>
        <right_flank>CTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGCTAACTCTCAAAATTCAGACTAATTTTTTTCAAACTTCATTAATGAAAACCATTTTTATTGCTATGCAATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAGTTTCAAGATAT</canonical>
            <polymorphic>AGGCTAACTCTCAAAATTCAGACTAATTTTTTTCAAACTTCATTAATGAAAACCATTTTTATTGCTATGCAATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTYCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAGTTTCAAGATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCATATTTTATGTCACTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>GAAACATTTGCAAGGTAATTAGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTYCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3155</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>12412</contig_pos>
        <strand>+</strand>
        <context>GCAATATTYW[C/T]TGAATGCCTY</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTA</left_flank>
        <right_flank>TGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTATTTTAAGGCTAACTCTCAAAATTCAGACTAATTTTTTTCAAACTTCATTAATGAAAACCATTTTTATTGCTATGCAATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAGT</canonical>
            <polymorphic>TGGTATTTTAAGGCTAACTCTCAAAATTCAGACTAATTTTTTTCAAACTTCATTAATGAAAACCATTTTTATTGCTATGCAATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTAYTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCATATTTTATGTCACTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>GAAACATTTGCAAGGTAATTAGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTAYTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3156</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>12411</contig_pos>
        <strand>+</strand>
        <context>TGCAATATTY[A/T]YTGAATGCCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTT</left_flank>
        <right_flank>CTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGTATTTTAAGGCTAACTCTCAAAATTCAGACTAATTTTTTTCAAACTTCATTAATGAAAACCATTTTTATTGCTATGCAATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAG</canonical>
            <polymorphic>GTGGTATTTTAAGGCTAACTCTCAAAATTCAGACTAATTTTTTTCAAACTTCATTAATGAAAACCATTTTTATTGCTATGCAATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTWCTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCATATTTTATGTCACTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>GAAACATTTGCAAGGTAATTAGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTWCTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3157</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>12410</contig_pos>
        <strand>+</strand>
        <context>ATGCAATATT[C/T]WYTGAATGCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATT</left_flank>
        <right_flank>ACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTGGTATTTTAAGGCTAACTCTCAAAATTCAGACTAATTTTTTTCAAACTTCATTAATGAAAACCATTTTTATTGCTATGCAATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAA</canonical>
            <polymorphic>CGTGGTATTTTAAGGCTAACTCTCAAAATTCAGACTAATTTTTTTCAAACTTCATTAATGAAAACCATTTTTATTGCTATGCAATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTYACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCATATTTTATGTCACTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>GAAACATTTGCAAGGTAATTAGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTYACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3158</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>12309</contig_pos>
        <strand>+</strand>
        <context>GCGGTAGTTG[A/G]GTAGAATTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTG</left_flank>
        <right_flank>GTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGATATTATGATAAACATTTTATCAGTTGACAAATTGTTTGATTTCTTCTGAAGGAACAGAGATAATTGAGCTCAGAGTTGACTGTTTGTATAGGTATTCGTGGTATTTTAAGGCTAACTCTCAAAATTCAGACTAATTTTTTTCAAACTTCATTAATGAAAACCATTTTTATTGCTATGCAATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAAC</canonical>
            <polymorphic>GGTGATATTATGATAAACATTTTATCAGTTGACAAATTGTTTGATTTCTTCTGAAGGAACAGAGATAATTGAGCTCAGAGTTGACTGTTTGTATAGGTATTCGTGGTATTTTAAGGCTAACTCTCAAAATTCAGACTAATTTTTTTCAAACTTCATTAATGAAAACCATTTTTATTGCTATGCAATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGRGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTCGTTGTTCCAGTCATT</pcr_primer_p1>
		<pcr_primer_p2>TGGAACAGTGACATAAAATATGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCA</canonical_amplicon>
		<polymorphic_amplicon>CAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGRGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3159</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>12289</contig_pos>
        <strand>+</strand>
        <context>YGGWAGTTSA[G/T]TAGATGGACG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGA</left_flank>
        <right_flank>TAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTAAACTACAAAAATGTAGGTGATATTATGATAAACATTTTATCAGTTGACAAATTGTTTGATTTCTTCTGAAGGAACAGAGATAATTGAGCTCAGAGTTGACTGTTTGTATAGGTATTCGTGGTATTTTAAGGCTAACTCTCAAAATTCAGACTAATTTTTTTCAAACTTCATTAATGAAAACCATTTTTATTGCTATGCAATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCT</canonical>
            <polymorphic>CTGTAAACTACAAAAATGTAGGTGATATTATGATAAACATTTTATCAGTTGACAAATTGTTTGATTTCTTCTGAAGGAACAGAGATAATTGAGCTCAGAGTTGACTGTTTGTATAGGTATTCGTGGTATTTTAAGGCTAACTCTCAAAATTCAGACTAATTTTTTTCAAACTTCATTAATGAAAACCATTTTTATTGCTATGCAATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAKTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTCGTTGTTCCAGTCATT</pcr_primer_p1>
		<pcr_primer_p2>TGGAACAGTGACATAAAATATGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCA</canonical_amplicon>
		<polymorphic_amplicon>CAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAKTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3160</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>12287</contig_pos>
        <strand>+</strand>
        <context>TGYGGWAGTT[C/G]AKTAGATGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTT</left_flank>
        <right_flank>AGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTGTAAACTACAAAAATGTAGGTGATATTATGATAAACATTTTATCAGTTGACAAATTGTTTGATTTCTTCTGAAGGAACAGAGATAATTGAGCTCAGAGTTGACTGTTTGTATAGGTATTCGTGGTATTTTAAGGCTAACTCTCAAAATTCAGACTAATTTTTTTCAAACTTCATTAATGAAAACCATTTTTATTGCTATGCAATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGT</canonical>
            <polymorphic>ATCTGTAAACTACAAAAATGTAGGTGATATTATGATAAACATTTTATCAGTTGACAAATTGTTTGATTTCTTCTGAAGGAACAGAGATAATTGAGCTCAGAGTTGACTGTTTGTATAGGTATTCGTGGTATTTTAAGGCTAACTCTCAAAATTCAGACTAATTTTTTTCAAACTTCATTAATGAAAACCATTTTTATTGCTATGCAATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTSAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTTCCAGTTTTTGTGGTATTC</pcr_primer_p1>
		<pcr_primer_p2>CCAGAAATTCCTTCATGCTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGG</canonical_amplicon>
		<polymorphic_amplicon>TAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTSAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3161</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>12282</contig_pos>
        <strand>+</strand>
        <context>TCATTTGYGG[A/T]AGTTSAKTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGG</left_flank>
        <right_flank>AGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAATCTGTAAACTACAAAAATGTAGGTGATATTATGATAAACATTTTATCAGTTGACAAATTGTTTGATTTCTTCTGAAGGAACAGAGATAATTGAGCTCAGAGTTGACTGTTTGTATAGGTATTCGTGGTATTTTAAGGCTAACTCTCAAAATTCAGACTAATTTTTTTCAAACTTCATTAATGAAAACCATTTTTATTGCTATGCAATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTT</canonical>
            <polymorphic>CAAAAATCTGTAAACTACAAAAATGTAGGTGATATTATGATAAACATTTTATCAGTTGACAAATTGTTTGATTTCTTCTGAAGGAACAGAGATAATTGAGCTCAGAGTTGACTGTTTGTATAGGTATTCGTGGTATTTTAAGGCTAACTCTCAAAATTCAGACTAATTTTTTTCAAACTTCATTAATGAAAACCATTTTTATTGCTATGCAATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGWAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAGTTCCAGTTTTTGTGGTAT</pcr_primer_p1>
		<pcr_primer_p2>AGAAATTCCTTCATGCTATCAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCT</canonical_amplicon>
		<polymorphic_amplicon>TTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGWAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3162</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>12279</contig_pos>
        <strand>+</strand>
        <context>GAATCATTTG[C/T]GGWAGTTSAK</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTG</left_flank>
        <right_flank>GGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCAAAAATCTGTAAACTACAAAAATGTAGGTGATATTATGATAAACATTTTATCAGTTGACAAATTGTTTGATTTCTTCTGAAGGAACAGAGATAATTGAGCTCAGAGTTGACTGTTTGTATAGGTATTCGTGGTATTTTAAGGCTAACTCTCAAAATTCAGACTAATTTTTTTCAAACTTCATTAATGAAAACCATTTTTATTGCTATGCAATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTG</canonical>
            <polymorphic>TATCAAAAATCTGTAAACTACAAAAATGTAGGTGATATTATGATAAACATTTTATCAGTTGACAAATTGTTTGATTTCTTCTGAAGGAACAGAGATAATTGAGCTCAGAGTTGACTGTTTGTATAGGTATTCGTGGTATTTTAAGGCTAACTCTCAAAATTCAGACTAATTTTTTTCAAACTTCATTAATGAAAACCATTTTTATTGCTATGCAATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGYGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAGTTCCAGTTTTTGTGGTAT</pcr_primer_p1>
		<pcr_primer_p2>AGAAATTCCTTCATGCTATCAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCT</canonical_amplicon>
		<polymorphic_amplicon>TTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGYGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3163</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>38073</contig_pos>
        <strand>+</strand>
        <context>TAAAGTAGCA[A/G]ATTTGCAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTTACTAACTAACTAACCACAAATGGCTATAGACGGTTTAAAGTAGCA</left_flank>
        <right_flank>ATTTGCAGAAGGAAATTTCTGGGATTCTACCGGGACTAGACAAATAAAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTTAGAGCTTGATTATCTCGGTTCCCATAAGAGTTATCAAAAAATGGCTAATCGTTATACTGTTTATCATAATATCACAAACATTTGATAGGTTAATACACTTTTGATATGTTTCAGAGGAACTGAGAAAAATTAGCTCAAAGTTGACAGCTTCTATTACAGGTGTATGGTAGTTTCAAACACCGTATCTCGCTTGGATGAATTTTTTCAGAAAAGTCAACAACTACAAAAATGAAGCTCTTTTTTTGTTTTATGAAATTCACCAGTTTCAGAATAAATAAGACTTTCATGAGACTATCTTAACTGTGACTGAATCTGACTTGGTCAAAATAAAATAGTAACATCTGGCTAAACAGAGGCGGAATAAAGATATCTACATATATACATCCACAACAACAAGAAAAAAGGCATTTGGATGGTAATGAAAAAAGAGAAAGATGAAGAAAACAAGTTACTAACTAACTAACCACAAATGGCTATAGACGGTTTAAAGTAGCAAATTTGCAGAAGGAAATTTCTGGGATTCTACCGGGACTAGACAAATAAAATATAGACTTTCAGAATTCCCATTTTCAGGCTTTCGAATGATACCCAAGTCGGGTCGTAACTAAGATATTTATCTGATTTATACAGGCTTCAAAACTTGACACATAAAATTTCGAAAAAAAAACATTTTTTGAAGTGCCTAAAACACTCGAGAAAAGTTGCCTTTTCACCACAAAAGAACTGCTTTTGACCGTCTCGGTGACGATTCGACGATTTAGTCTGTATTCCGGGAAAATGAGGATAAATGGAATGAAGAGGGCGTATATGCAAATCGCAAAAGATGCTATCCGCGCGCCCCCAAAGGATTATATGAGGTGGAAACTTACAAACCTCCAAGATTCGTTCCCTACTTGCTTTATGAGGTGTGGAAAGGTGAATATCCGGGTATATCCACATCCTAAAAAAAGAAAAAAAGATTTGACCCAGGCAGGGATCGAACCTGCAATCTTCTGA</canonical>
            <polymorphic>GCTTAGAGCTTGATTATCTCGGTTCCCATAAGAGTTATCAAAAAATGGCTAATCGTTATACTGTTTATCATAATATCACAAACATTTGATAGGTTAATACACTTTTGATATGTTTCAGAGGAACTGAGAAAAATTAGCTCAAAGTTGACAGCTTCTATTACAGGTGTATGGTAGTTTCAAACACCGTATCTCGCTTGGATGAATTTTTTCAGAAAAGTCAACAACTACAAAAATGAAGCTCTTTTTTTGTTTTATGAAATTCACCAGTTTCAGAATAAATAAGACTTTCATGAGACTATCTTAACTGTGACTGAATCTGACTTGGTCAAAATAAAATAGTAACATCTGGCTAAACAGAGGCGGAATAAAGATATCTACATATATACATCCACAACAACAAGAAAAAAGGCATTTGGATGGTAATGAAAAAAGAGAAAGATGAAGAAAACAAGTTACTAACTAACTAACCACAAATGGCTATAGACGGTTTAAAGTAGCARATTTGCAGAAGGAAATTTCTGGGATTCTACCGGGACTAGACAAATAAAATATAGACTTTCAGAATTCCCATTTTCAGGCTTTCGAATGATACCCAAGTCGGGTCGTAACTAAGATATTTATCTGATTTATACAGGCTTCAAAACTTGACACATAAAATTTCGAAAAAAAAACATTTTTTGAAGTGCCTAAAACACTCGAGAAAAGTTGCCTTTTCACCACAAAAGAACTGCTTTTGACCGTCTCGGTGACGATTCGACGATTTAGTCTGTATTCCGGGAAAATGAGGATAAATGGAATGAAGAGGGCGTATATGCAAATCGCAAAAGATGCTATCCGCGCGCCCCCAAAGGATTATATGAGGTGGAAACTTACAAACCTCCAAGATTCGTTCCCTACTTGCTTTATGAGGTGTGGAAAGGTGAATATCCGGGTATATCCACATCCTAAAAAAAGAAAAAAAGATTTGACCCAGGCAGGGATCGAACCTGCAATCTTCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>345 242 201 93 56 49 14</canonical_bands>
                <polymorphic_bands>345 256 201 93 56 49</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>345 242 131 93 70 56 49 14</canonical_bands>
                <polymorphic_bands>345 256 131 93 70 56 49</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATACATCCACAACAACAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>ATATCTTAGTTACGACCCGACTT</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TATACATCCACAACAACAAGAAAAAAGGCATTTGGATGGTAATGAAAAAAGAGAAAGATGAAGAAAACAAGTTACTAACTAACTAACCACAAATGGCTATAGACGGTTTAAAGTAGCAAATTTGCAGAAGGAAATTTCTGGGATTCTACCGGGACTAGACAAATAAAATATAGACTTTCAGAATTCCCATTTTCAGGCTTTCGAATGATACCCAAGTCGGGTCGTAACTAAGATAT</canonical_amplicon>
		<polymorphic_amplicon>TATACATCCACAACAACAAGAAAAAAGGCATTTGGATGGTAATGAAAAAAGAGAAAGATGAAGAAAACAAGTTACTAACTAACTAACCACAAATGGCTATAGACGGTTTAAAGTAGCARATTTGCAGAAGGAAATTTCTGGGATTCTACCGGGACTAGACAAATAAAATATAGACTTTCAGAATTCCCATTTTCAGGCTTTCGAATGATACCCAAGTCGGGTCGTAACTAAGATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3164</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>38096</contig_pos>
        <strand>+</strand>
        <context>AAATTTCTGG[A/G]ATTCTACCGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGGCTATAGACGGTTTAAAGTAGCAAATTTGCAGAAGGAAATTTCTGG</left_flank>
        <right_flank>ATTCTACCGGGACTAGACAAATAAAATATAGACTTTCAGAATTCCCATTT</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCCATAAGAGTTATCAAAAAATGGCTAATCGTTATACTGTTTATCATAATATCACAAACATTTGATAGGTTAATACACTTTTGATATGTTTCAGAGGAACTGAGAAAAATTAGCTCAAAGTTGACAGCTTCTATTACAGGTGTATGGTAGTTTCAAACACCGTATCTCGCTTGGATGAATTTTTTCAGAAAAGTCAACAACTACAAAAATGAAGCTCTTTTTTTGTTTTATGAAATTCACCAGTTTCAGAATAAATAAGACTTTCATGAGACTATCTTAACTGTGACTGAATCTGACTTGGTCAAAATAAAATAGTAACATCTGGCTAAACAGAGGCGGAATAAAGATATCTACATATATACATCCACAACAACAAGAAAAAAGGCATTTGGATGGTAATGAAAAAAGAGAAAGATGAAGAAAACAAGTTACTAACTAACTAACCACAAATGGCTATAGACGGTTTAAAGTAGCAAATTTGCAGAAGGAAATTTCTGGGATTCTACCGGGACTAGACAAATAAAATATAGACTTTCAGAATTCCCATTTTCAGGCTTTCGAATGATACCCAAGTCGGGTCGTAACTAAGATATTTATCTGATTTATACAGGCTTCAAAACTTGACACATAAAATTTCGAAAAAAAAACATTTTTTGAAGTGCCTAAAACACTCGAGAAAAGTTGCCTTTTCACCACAAAAGAACTGCTTTTGACCGTCTCGGTGACGATTCGACGATTTAGTCTGTATTCCGGGAAAATGAGGATAAATGGAATGAAGAGGGCGTATATGCAAATCGCAAAAGATGCTATCCGCGCGCCCCCAAAGGATTATATGAGGTGGAAACTTACAAACCTCCAAGATTCGTTCCCTACTTGCTTTATGAGGTGTGGAAAGGTGAATATCCGGGTATATCCACATCCTAAAAAAAGAAAAAAAGATTTGACCCAGGCAGGGATCGAACCTGCAATCTTCTGATTAGAAGTCAGACGCCTTATCCA</canonical>
            <polymorphic>TCCCATAAGAGTTATCAAAAAATGGCTAATCGTTATACTGTTTATCATAATATCACAAACATTTGATAGGTTAATACACTTTTGATATGTTTCAGAGGAACTGAGAAAAATTAGCTCAAAGTTGACAGCTTCTATTACAGGTGTATGGTAGTTTCAAACACCGTATCTCGCTTGGATGAATTTTTTCAGAAAAGTCAACAACTACAAAAATGAAGCTCTTTTTTTGTTTTATGAAATTCACCAGTTTCAGAATAAATAAGACTTTCATGAGACTATCTTAACTGTGACTGAATCTGACTTGGTCAAAATAAAATAGTAACATCTGGCTAAACAGAGGCGGAATAAAGATATCTACATATATACATCCACAACAACAAGAAAAAAGGCATTTGGATGGTAATGAAAAAAGAGAAAGATGAAGAAAACAAGTTACTAACTAACTAACCACAAATGGCTATAGACGGTTTAAAGTAGCAAATTTGCAGAAGGAAATTTCTGGRATTCTACCGGGACTAGACAAATAAAATATAGACTTTCAGAATTCCCATTTTCAGGCTTTCGAATGATACCCAAGTCGGGTCGTAACTAAGATATTTATCTGATTTATACAGGCTTCAAAACTTGACACATAAAATTTCGAAAAAAAAACATTTTTTGAAGTGCCTAAAACACTCGAGAAAAGTTGCCTTTTCACCACAAAAGAACTGCTTTTGACCGTCTCGGTGACGATTCGACGATTTAGTCTGTATTCCGGGAAAATGAGGATAAATGGAATGAAGAGGGCGTATATGCAAATCGCAAAAGATGCTATCCGCGCGCCCCCAAAGGATTATATGAGGTGGAAACTTACAAACCTCCAAGATTCGTTCCCTACTTGCTTTATGAGGTGTGGAAAGGTGAATATCCGGGTATATCCACATCCTAAAAAAAGAAAAAAAGATTTGACCCAGGCAGGGATCGAACCTGCAATCTTCTGATTAGAAGTCAGACGCCTTATCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>290 228 210 139 133</canonical_bands>
                <polymorphic_bands>438 290 139 133</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>290 228 210 139 133</canonical_bands>
                <polymorphic_bands>438 290 139 133</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATACATCCACAACAACAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>ATATCTTAGTTACGACCCGACTT</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TATACATCCACAACAACAAGAAAAAAGGCATTTGGATGGTAATGAAAAAAGAGAAAGATGAAGAAAACAAGTTACTAACTAACTAACCACAAATGGCTATAGACGGTTTAAAGTAGCAAATTTGCAGAAGGAAATTTCTGGGATTCTACCGGGACTAGACAAATAAAATATAGACTTTCAGAATTCCCATTTTCAGGCTTTCGAATGATACCCAAGTCGGGTCGTAACTAAGATAT</canonical_amplicon>
		<polymorphic_amplicon>TATACATCCACAACAACAAGAAAAAAGGCATTTGGATGGTAATGAAAAAAGAGAAAGATGAAGAAAACAAGTTACTAACTAACTAACCACAAATGGCTATAGACGGTTTAAAGTAGCAAATTTGCAGAAGGAAATTTCTGGRATTCTACCGGGACTAGACAAATAAAATATAGACTTTCAGAATTCCCATTTTCAGGCTTTCGAATGATACCCAAGTCGGGTCGTAACTAAGATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3165</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>40007</contig_pos>
        <strand>+</strand>
        <context>AAGAAGCTGA[A/T]ATGATCAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGAAGACGTCAATTGGAGACGCAGACGTCTGGCGAGAAGAAGAAGCTGA</left_flank>
        <right_flank>ATGATCAATTAGGGGATGTTGTCACTTTGGAGATGGATATGGGAATGTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGGGAACATTACGAAGAATGCATCTTCAAATACTACAGTAACCGTTTTTCGTTTGTAATTGAGTTTTCACTGAAAAAGTAACAATTTCTTAGAATTTTGCAATTATTTTGTCTGAAAAAAACCCGAAAGTTTTTGTTTTTTGAGTTACGAAATGTGCTCGAGCGCAAAATGTAAATACCGTAGTAAAAACTAGCCTTAATCTCGAGAAGAATGGAAAAACCCGGGAAAAAAAACTATATTCAAAAAATGACCCAGGAAAAACCACAACAATTCATAAATGCAAATCTCGATGATGACACAAAAACAGTTTCTAGCTACGCAGCGCGGCAAAACAGAAAGACGATTCGAAAGCTAACGGGATAAAAATGTACAAGAAAGGGAAAGGGAAGAGAGGAAAGGCCTGTGTGTTATCTTCTTCATTCCGATGGAAGAACCTGATGAATCTGTAGAGAAGACGTCAATTGGAGACGCAGACGTCTGGCGAGAAGAAGAAGCTGATATGATCAATTAGGGGATGTTGTCACTTTGGAGATGGATATGGGAATGTTAGACATTTCGGAAACAATTGTCCCGACCTTGTGATGATCACACTAAAAATATATGCCGTATGACATTATTGTTTTACAGTTTTCTCAGTTTCTGTAAGAGATATCAAATATCTGTCAACCATGAAAATGTAGGTGGCATTATGGCAAACATTTTATCAGTTGACCACTTCTCGATTTCTTTTACACGAATCGAGATAATTGAGCTCAAAGTGAAGTAGGTCTCTCTCCGTACACTCTAACCTTCCTTTGCACATCCCTCTCCCTATCTCTTCTCTTTTCTTTCTCACCTCCCCCACATATACTTCCTCCCTCCCAACTGTCTCTTGTCAGCAGCGTGGCGCAGTGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGGTGGATCGAAACCACTCGCTGCTAGAATCTTTTTTTTAATCTTTTTTATAGGTCACCTAAAGGATAGGGGTATCC</canonical>
            <polymorphic>CCGGGAACATTACGAAGAATGCATCTTCAAATACTACAGTAACCGTTTTTCGTTTGTAATTGAGTTTTCACTGAAAAAGTAACAATTTCTTAGAATTTTGCAATTATTTTGTCTGAAAAAAACCCGAAAGTTTTTGTTTTTTGAGTTACGAAATGTGCTCGAGCGCAAAATGTAAATACCGTAGTAAAAACTAGCCTTAATCTCGAGAAGAATGGAAAAACCCGGGAAAAAAAACTATATTCAAAAAATGACCCAGGAAAAACCACAACAATTCATAAATGCAAATCTCGATGATGACACAAAAACAGTTTCTAGCTACGCAGCGCGGCAAAACAGAAAGACGATTCGAAAGCTAACGGGATAAAAATGTACAAGAAAGGGAAAGGGAAGAGAGGAAAGGCCTGTGTGTTATCTTCTTCATTCCGATGGAAGAACCTGATGAATCTGTAGAGAAGACGTCAATTGGAGACGCAGACGTCTGGCGAGAAGAAGAAGCTGAWATGATCAATTAGGGGATGTTGTCACTTTGGAGATGGATATGGGAATGTTAGACATTTCGGAAACAATTGTCCCGACCTTGTGATGATCACACTAAAAATATATGCCGTATGACATTATTGTTTTACAGTTTTCTCAGTTTCTGTAAGAGATATCAAATATCTGTCAACCATGAAAATGTAGGTGGCATTATGGCAAACATTTTATCAGTTGACCACTTCTCGATTTCTTTTACACGAATCGAGATAATTGAGCTCAAAGTGAAGTAGGTCTCTCTCCGTACACTCTAACCTTCCTTTGCACATCCCTCTCCCTATCTCTTCTCTTTTCTTTCTCACCTCCCCCACATATACTTCCTCCCTCCCAACTGTCTCTTGTCAGCAGCGTGGCGCAGTGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGGTGGATCGAAACCACTCGCTGCTAGAATCTTTTTTTTAATCTTTTTTATAGGTCACCTAAAGGATAGGGGTATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGTACAAGAAAGGGAAAG</pcr_primer_p1>
		<pcr_primer_p2>ACGGCATATATTTTTAGTGTGAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGTACAAGAAAGGGAAAGGGAAGAGAGGAAAGGCCTGTGTGTTATCTTCTTCATTCCGATGGAAGAACCTGATGAATCTGTAGAGAAGACGTCAATTGGAGACGCAGACGTCTGGCGAGAAGAAGAAGCTGATATGATCAATTAGGGGATGTTGTCACTTTGGAGATGGATATGGGAATGTTAGACATTTCGGAAACAATTGTCCCGACCTTGTGATGATCACACTAAAAATATATGCCGT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGTACAAGAAAGGGAAAGGGAAGAGAGGAAAGGCCTGTGTGTTATCTTCTTCATTCCGATGGAAGAACCTGATGAATCTGTAGAGAAGACGTCAATTGGAGACGCAGACGTCTGGCGAGAAGAAGAAGCTGAWATGATCAATTAGGGGATGTTGTCACTTTGGAGATGGATATGGGAATGTTAGACATTTCGGAAACAATTGTCCCGACCTTGTGATGATCACACTAAAAATATATGCCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3166</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>39984</contig_pos>
        <strand>+</strand>
        <context>AGACGCARAC[A/G]TCTGGCGAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGAAGAACCTGATGAATCTGTAGAGAAGACGTCAATTGGAGACGCAGAC</left_flank>
        <right_flank>TCTGGCGAGAAGAAGAAGCTGATATGATCAATTAGGGGATGTTGTCACTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAGCTTTAAACCAGAGTTTCCGGGAACATTACGAAGAATGCATCTTCAAATACTACAGTAACCGTTTTTCGTTTGTAATTGAGTTTTCACTGAAAAAGTAACAATTTCTTAGAATTTTGCAATTATTTTGTCTGAAAAAAACCCGAAAGTTTTTGTTTTTTGAGTTACGAAATGTGCTCGAGCGCAAAATGTAAATACCGTAGTAAAAACTAGCCTTAATCTCGAGAAGAATGGAAAAACCCGGGAAAAAAAACTATATTCAAAAAATGACCCAGGAAAAACCACAACAATTCATAAATGCAAATCTCGATGATGACACAAAAACAGTTTCTAGCTACGCAGCGCGGCAAAACAGAAAGACGATTCGAAAGCTAACGGGATAAAAATGTACAAGAAAGGGAAAGGGAAGAGAGGAAAGGCCTGTGTGTTATCTTCTTCATTCCGATGGAAGAACCTGATGAATCTGTAGAGAAGACGTCAATTGGAGACGCAGACGTCTGGCGAGAAGAAGAAGCTGATATGATCAATTAGGGGATGTTGTCACTTTGGAGATGGATATGGGAATGTTAGACATTTCGGAAACAATTGTCCCGACCTTGTGATGATCACACTAAAAATATATGCCGTATGACATTATTGTTTTACAGTTTTCTCAGTTTCTGTAAGAGATATCAAATATCTGTCAACCATGAAAATGTAGGTGGCATTATGGCAAACATTTTATCAGTTGACCACTTCTCGATTTCTTTTACACGAATCGAGATAATTGAGCTCAAAGTGAAGTAGGTCTCTCTCCGTACACTCTAACCTTCCTTTGCACATCCCTCTCCCTATCTCTTCTCTTTTCTTTCTCACCTCCCCCACATATACTTCCTCCCTCCCAACTGTCTCTTGTCAGCAGCGTGGCGCAGTGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGGTGGATCGAAACCACTCGCTGCTAGAATCTTTTTTTTAATCTTTTTTATAGG</canonical>
            <polymorphic>AAAAAAGCTTTAAACCAGAGTTTCCGGGAACATTACGAAGAATGCATCTTCAAATACTACAGTAACCGTTTTTCGTTTGTAATTGAGTTTTCACTGAAAAAGTAACAATTTCTTAGAATTTTGCAATTATTTTGTCTGAAAAAAACCCGAAAGTTTTTGTTTTTTGAGTTACGAAATGTGCTCGAGCGCAAAATGTAAATACCGTAGTAAAAACTAGCCTTAATCTCGAGAAGAATGGAAAAACCCGGGAAAAAAAACTATATTCAAAAAATGACCCAGGAAAAACCACAACAATTCATAAATGCAAATCTCGATGATGACACAAAAACAGTTTCTAGCTACGCAGCGCGGCAAAACAGAAAGACGATTCGAAAGCTAACGGGATAAAAATGTACAAGAAAGGGAAAGGGAAGAGAGGAAAGGCCTGTGTGTTATCTTCTTCATTCCGATGGAAGAACCTGATGAATCTGTAGAGAAGACGTCAATTGGAGACGCAGACRTCTGGCGAGAAGAAGAAGCTGATATGATCAATTAGGGGATGTTGTCACTTTGGAGATGGATATGGGAATGTTAGACATTTCGGAAACAATTGTCCCGACCTTGTGATGATCACACTAAAAATATATGCCGTATGACATTATTGTTTTACAGTTTTCTCAGTTTCTGTAAGAGATATCAAATATCTGTCAACCATGAAAATGTAGGTGGCATTATGGCAAACATTTTATCAGTTGACCACTTCTCGATTTCTTTTACACGAATCGAGATAATTGAGCTCAAAGTGAAGTAGGTCTCTCTCCGTACACTCTAACCTTCCTTTGCACATCCCTCTCCCTATCTCTTCTCTTTTCTTTCTCACCTCCCCCACATATACTTCCTCCCTCCCAACTGTCTCTTGTCAGCAGCGTGGCGCAGTGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGGTGGATCGAAACCACTCGCTGCTAGAATCTTTTTTTTAATCTTTTTTATAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNNNNGTC</site>
                <isoschizomers>
                    <enzyme>AasI</enzyme>
                    <enzyme>DrdI</enzyme>
                    <enzyme>DseDI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GACGTC</site>
                <isoschizomers>
                    <enzyme>AatII</enzyme>
                    <enzyme>ZraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 482 19</canonical_bands>
                <polymorphic_bands>518 482</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>502 479 19</canonical_bands>
                <polymorphic_bands>521 479</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>502 479 19</canonical_bands>
                <polymorphic_bands>521 479</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGTACAAGAAAGGGAAAG</pcr_primer_p1>
		<pcr_primer_p2>ACGGCATATATTTTTAGTGTGAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGTACAAGAAAGGGAAAGGGAAGAGAGGAAAGGCCTGTGTGTTATCTTCTTCATTCCGATGGAAGAACCTGATGAATCTGTAGAGAAGACGTCAATTGGAGACGCAGACGTCTGGCGAGAAGAAGAAGCTGATATGATCAATTAGGGGATGTTGTCACTTTGGAGATGGATATGGGAATGTTAGACATTTCGGAAACAATTGTCCCGACCTTGTGATGATCACACTAAAAATATATGCCGT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGTACAAGAAAGGGAAAGGGAAGAGAGGAAAGGCCTGTGTGTTATCTTCTTCATTCCGATGGAAGAACCTGATGAATCTGTAGAGAAGACGTCAATTGGAGACGCAGACRTCTGGCGAGAAGAAGAAGCTGATATGATCAATTAGGGGATGTTGTCACTTTGGAGATGGATATGGGAATGTTAGACATTTCGGAAACAATTGTCCCGACCTTGTGATGATCACACTAAAAATATATGCCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3167</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>39981</contig_pos>
        <strand>+</strand>
        <context>TGGAGACGCA[A/G]ACRTCTGGCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGATGGAAGAACCTGATGAATCTGTAGAGAAGACGTCAATTGGAGACGCA</left_flank>
        <right_flank>ACGTCTGGCGAGAAGAAGAAGCTGATATGATCAATTAGGGGATGTTGTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAAAAAAAGCTTTAAACCAGAGTTTCCGGGAACATTACGAAGAATGCATCTTCAAATACTACAGTAACCGTTTTTCGTTTGTAATTGAGTTTTCACTGAAAAAGTAACAATTTCTTAGAATTTTGCAATTATTTTGTCTGAAAAAAACCCGAAAGTTTTTGTTTTTTGAGTTACGAAATGTGCTCGAGCGCAAAATGTAAATACCGTAGTAAAAACTAGCCTTAATCTCGAGAAGAATGGAAAAACCCGGGAAAAAAAACTATATTCAAAAAATGACCCAGGAAAAACCACAACAATTCATAAATGCAAATCTCGATGATGACACAAAAACAGTTTCTAGCTACGCAGCGCGGCAAAACAGAAAGACGATTCGAAAGCTAACGGGATAAAAATGTACAAGAAAGGGAAAGGGAAGAGAGGAAAGGCCTGTGTGTTATCTTCTTCATTCCGATGGAAGAACCTGATGAATCTGTAGAGAAGACGTCAATTGGAGACGCAGACGTCTGGCGAGAAGAAGAAGCTGATATGATCAATTAGGGGATGTTGTCACTTTGGAGATGGATATGGGAATGTTAGACATTTCGGAAACAATTGTCCCGACCTTGTGATGATCACACTAAAAATATATGCCGTATGACATTATTGTTTTACAGTTTTCTCAGTTTCTGTAAGAGATATCAAATATCTGTCAACCATGAAAATGTAGGTGGCATTATGGCAAACATTTTATCAGTTGACCACTTCTCGATTTCTTTTACACGAATCGAGATAATTGAGCTCAAAGTGAAGTAGGTCTCTCTCCGTACACTCTAACCTTCCTTTGCACATCCCTCTCCCTATCTCTTCTCTTTTCTTTCTCACCTCCCCCACATATACTTCCTCCCTCCCAACTGTCTCTTGTCAGCAGCGTGGCGCAGTGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGGTGGATCGAAACCACTCGCTGCTAGAATCTTTTTTTTAATCTTTTTTAT</canonical>
            <polymorphic>TTAAAAAAAGCTTTAAACCAGAGTTTCCGGGAACATTACGAAGAATGCATCTTCAAATACTACAGTAACCGTTTTTCGTTTGTAATTGAGTTTTCACTGAAAAAGTAACAATTTCTTAGAATTTTGCAATTATTTTGTCTGAAAAAAACCCGAAAGTTTTTGTTTTTTGAGTTACGAAATGTGCTCGAGCGCAAAATGTAAATACCGTAGTAAAAACTAGCCTTAATCTCGAGAAGAATGGAAAAACCCGGGAAAAAAAACTATATTCAAAAAATGACCCAGGAAAAACCACAACAATTCATAAATGCAAATCTCGATGATGACACAAAAACAGTTTCTAGCTACGCAGCGCGGCAAAACAGAAAGACGATTCGAAAGCTAACGGGATAAAAATGTACAAGAAAGGGAAAGGGAAGAGAGGAAAGGCCTGTGTGTTATCTTCTTCATTCCGATGGAAGAACCTGATGAATCTGTAGAGAAGACGTCAATTGGAGACGCARACGTCTGGCGAGAAGAAGAAGCTGATATGATCAATTAGGGGATGTTGTCACTTTGGAGATGGATATGGGAATGTTAGACATTTCGGAAACAATTGTCCCGACCTTGTGATGATCACACTAAAAATATATGCCGTATGACATTATTGTTTTACAGTTTTCTCAGTTTCTGTAAGAGATATCAAATATCTGTCAACCATGAAAATGTAGGTGGCATTATGGCAAACATTTTATCAGTTGACCACTTCTCGATTTCTTTTACACGAATCGAGATAATTGAGCTCAAAGTGAAGTAGGTCTCTCTCCGTACACTCTAACCTTCCTTTGCACATCCCTCTCCCTATCTCTTCTCTTTTCTTTCTCACCTCCCCCACATATACTTCCTCCCTCCCAACTGTCTCTTGTCAGCAGCGTGGCGCAGTGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGGTGGATCGAAACCACTCGCTGCTAGAATCTTTTTTTTAATCTTTTTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACGTC</site>
                <isoschizomers>
                    <enzyme>AatII</enzyme>
                    <enzyme>ZraI</enzyme>
                </isoschizomers>
                <canonical_bands>496 485 19</canonical_bands>
                <polymorphic_bands>515 485</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>499 482 19</canonical_bands>
                <polymorphic_bands>518 482</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGTACAAGAAAGGGAAAG</pcr_primer_p1>
		<pcr_primer_p2>ACGGCATATATTTTTAGTGTGAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGTACAAGAAAGGGAAAGGGAAGAGAGGAAAGGCCTGTGTGTTATCTTCTTCATTCCGATGGAAGAACCTGATGAATCTGTAGAGAAGACGTCAATTGGAGACGCAGACGTCTGGCGAGAAGAAGAAGCTGATATGATCAATTAGGGGATGTTGTCACTTTGGAGATGGATATGGGAATGTTAGACATTTCGGAAACAATTGTCCCGACCTTGTGATGATCACACTAAAAATATATGCCGT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGTACAAGAAAGGGAAAGGGAAGAGAGGAAAGGCCTGTGTGTTATCTTCTTCATTCCGATGGAAGAACCTGATGAATCTGTAGAGAAGACGTCAATTGGAGACGCARACGTCTGGCGAGAAGAAGAAGCTGATATGATCAATTAGGGGATGTTGTCACTTTGGAGATGGATATGGGAATGTTAGACATTTCGGAAACAATTGTCCCGACCTTGTGATGATCACACTAAAAATATATGCCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3168</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>39758</contig_pos>
        <strand></strand>
        <context>TCAAAAAATG[A/T]CCCAGGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTCGAGAAGAATGGAAAAACCCGGGAAAAAAAACTATATTCAAAAAATG</left_flank>
        <right_flank>CCCAGGAAAAACCACAACAATTCATAAATGCAAATCTCGATGATGACACA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCAAAAAATAGAAGAAAAATAACCAGAAAACCATTAAACCAAAATTTTCAGAAAAATTGAAAAATTTTTGAGTTATGTGCCTTTAAAGTCTACAGTAACTCGAAAATATAACTTCCATTGGTTTTTCGGCGAGAAAAAGGTTTAAAATGTTGAGAAAAGCTATAATTACGCCATTTAATGAGTTCAATAGTTCTATTTCCGCAAAAAGTTTCAGAAAAATCATTAAAAAAAGCTTTAAACCAGAGTTTCCGGGAACATTACGAAGAATGCATCTTCAAATACTACAGTAACCGTTTTTCGTTTGTAATTGAGTTTTCACTGAAAAAGTAACAATTTCTTAGAATTTTGCAATTATTTTGTCTGAAAAAAACCCGAAAGTTTTTGTTTTTTGAGTTACGAAATGTGCTCGAGCGCAAAATGTAAATACCGTAGTAAAAACTAGCCTTAATCTCGAGAAGAATGGAAAAACCCGGGAAAAAAAACTATATTCAAAAAATGACCCAGGAAAAACCACAACAATTCATAAATGCAAATCTCGATGATGACACAAAAACAGTTTCTAGCTACGCAGCGCGGCAAAACAGAAAGACGATTCGAAAGCTAACGGGATAAAAATGTACAAGAAAGGGAAAGGGAAGAGAGGAAAGGCCTGTGTGTTATCTTCTTCATTCCGATGGAAGAACCTGATGAATCTGTAGAGAAGACGTCAATTGGAGACGCAGACGTCTGGCGAGAAGAAGAAGCTGATATGATCAATTAGGGGATGTTGTCACTTTGGAGATGGATATGGGAATGTTAGACATTTCGGAAACAATTGTCCCGACCTTGTGATGATCACACTAAAAATATATGCCGTATGACATTATTGTTTTACAGTTTTCTCAGTTTCTGTAAGAGATATCAAATATCTGTCAACCATGAAAATGTAGGTGGCATTATGGCAAACATTTTATCAGTTGACCACTTCTCGATTTCTTTTACACGAATCGAGATAATTGA</canonical>
            <polymorphic>AGCAAAAAATAGAAGAAAAATAACCAGAAAACCATTAAACCAAAATTTTCAGAAAAATTGAAAAATTTTTGAGTTATGTGCCTTTAAAGTCTACAGTAACTCGAAAATATAACTTCCATTGGTTTTTCGGCGAGAAAAAGGTTTAAAATGTTGAGAAAAGCTATAATTACGCCATTTAATGAGTTCAATAGTTCTATTTCCGCAAAAAGTTTCAGAAAAATCATTAAAAAAAGCTTTAAACCAGAGTTTCCGGGAACATTACGAAGAATGCATCTTCAAATACTACAGTAACCGTTTTTCGTTTGTAATTGAGTTTTCACTGAAAAAGTAACAATTTCTTAGAATTTTGCAATTATTTTGTCTGAAAAAAACCCGAAAGTTTTTGTTTTTTGAGTTACGAAATGTGCTCGAGCGCAAAATGTAAATACCGTAGTAAAAACTAGCCTTAATCTCGAGAAGAATGGAAAAACCCGGGAAAAAAAACTATATTCAAAAAATGWCCCAGGAAAAACCACAACAATTCATAAATGCAAATCTCGATGATGACACAAAAACAGTTTCTAGCTACGCAGCGCGGCAAAACAGAAAGACGATTCGAAAGCTAACGGGATAAAAATGTACAAGAAAGGGAAAGGGAAGAGAGGAAAGGCCTGTGTGTTATCTTCTTCATTCCGATGGAAGAACCTGATGAATCTGTAGAGAAGACGTCAATTGGAGACGCAGACGTCTGGCGAGAAGAAGAAGCTGATATGATCAATTAGGGGATGTTGTCACTTTGGAGATGGATATGGGAATGTTAGACATTTCGGAAACAATTGTCCCGACCTTGTGATGATCACACTAAAAATATATGCCGTATGACATTATTGTTTTACAGTTTTCTCAGTTTCTGTAAGAGATATCAAATATCTGTCAACCATGAAAATGTAGGTGGCATTATGGCAAACATTTTATCAGTTGACCACTTCTCGATTTCTTTTACACGAATCGAGATAATTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGTAGTAAAAACTAGCCTTAATC</pcr_primer_p1>
		<pcr_primer_p2>GGAATGAAGAAGATAACACACAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CCGTAGTAAAAACTAGCCTTAATCTCGAGAAGAATGGAAAAACCCGGGAAAAAAAACTATATTCAAAAAATGACCCAGGAAAAACCACAACAATTCATAAATGCAAATCTCGATGATGACACAAAAACAGTTTCTAGCTACGCAGCGCGGCAAAACAGAAAGACGATTCGAAAGCTAACGGGATAAAAATGTACAAGAAAGGGAAAGGGAAGAGAGGAAAGGCCTGTGTGTTATCTTCTTCATTCC</canonical_amplicon>
		<polymorphic_amplicon>CCGTAGTAAAAACTAGCCTTAATCTCGAGAAGAATGGAAAAACCCGGGAAAAAAAACTATATTCAAAAAATGWCCCAGGAAAAACCACAACAATTCATAAATGCAAATCTCGATGATGACACAAAAACAGTTTCTAGCTACGCAGCGCGGCAAAACAGAAAGACGATTCGAAAGCTAACGGGATAAAAATGTACAAGAAAGGGAAAGGGAAGAGAGGAAAGGCCTGTGTGTTATCTTCTTCATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3206</snp_id>
        <super_contig>c001201154.Contig1</super_contig>
        <contig_pos>26653</contig_pos>
        <strand>+</strand>
        <context>TTTTCTTCTC[A/T]CCCATATAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATGCATATTACTGTAGCTAACCATTTGCTTTCATTTCCTTTTTCTTCTC</left_flank>
        <right_flank>CCCATATAAACATTTTTCTGGTTTCAAAGACCTGTTTTCTTGGATAAATA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTAATTTATTTGTCTCCCACCCCAAAAAAAAATTGCTCATCTTTTTCCCTAAGCCACACCCCTTTTCAAATATACGCAAAACCCCGTTTCTAACCATGAAAAACAACAATTTCACCATTCTCTTAAATTATTGGTAGTGAATTCCCATCTCTCTTTCCCCAATTATCTCTCTTATTATAATATTTGTTGATTTTTTGTGAAATATAATTTCTAGGTCCCCTTTCTGAACGAGTAAATCAAAAAAAGCATATGATATATATTCTGAAAAAAAAACAGAATATGTAGGGTTCCCTCATAATTTCTCTCATAATTGTAACTTGTTCGTTTTTCTCAAAAATACCACTTTTTCATTTGTTAAATATATATTTTTTAATTCAACTTAAAATTATTTCATTTTAGAACACACTGGTTCTGTAATGGGGCGTTTTTTTTTTGAATAATTCTCATAATGCATATTACTGTAGCTAACCATTTGCTTTCATTTCCTTTTTCTTCTCTCCCATATAAACATTTTTCTGGTTTCAAAGACCTGTTTTCTTGGATAAATAATCTGAAAACTTCCGAAACAGTGTTTTTTTAATCACCTAAAATGAGACCAAAACAATTTTTTTCGTAAGAATTATTGTTCTGATAGGAAAGGGGCGGAGTTTCCCTTGTGAGCAGAGAAAAATAGTCTGTAAAACGTTTTGGTGTTTGCTTTTGAGAAAAAAAAACCACTCGTTTTCGATATGATATTTTTTATATACAAAAACGATTAATCAAGTGTCTACGAAAATATTTACATCTTAAAAAATACTTTATGGAGTTCCATCGGTTTACTTGAAAAGTGGAATTTGGAGATCAGTTGAAAAGTTGACACATACAGCAGTGACTAATGAGAATCCTGAAAAACACATTGATGATATGATCCACTAGGGCAATTAGTAAACTAATTATTATTGGTGGCTGAAAAAATGGTGGAGAAGCAGGGAAAAAGTGTCTGCGTCTCCATTGTACTG</canonical>
            <polymorphic>TACTAATTTATTTGTCTCCCACCCCAAAAAAAAATTGCTCATCTTTTTCCCTAAGCCACACCCCTTTTCAAATATACGCAAAACCCCGTTTCTAACCATGAAAAACAACAATTTCACCATTCTCTTAAATTATTGGTAGTGAATTCCCATCTCTCTTTCCCCAATTATCTCTCTTATTATAATATTTGTTGATTTTTTGTGAAATATAATTTCTAGGTCCCCTTTCTGAACGAGTAAATCAAAAAAAGCATATGATATATATTCTGAAAAAAAAACAGAATATGTAGGGTTCCCTCATAATTTCTCTCATAATTGTAACTTGTTCGTTTTTCTCAAAAATACCACTTTTTCATTTGTTAAATATATATTTTTTAATTCAACTTAAAATTATTTCATTTTAGAACACACTGGTTCTGTAATGGGGCGTTTTTTTTTTGAATAATTCTCATAATGCATATTACTGTAGCTAACCATTTGCTTTCATTTCCTTTTTCTTCTCWCCCATATAAACATTTTTCTGGTTTCAAAGACCTGTTTTCTTGGATAAATAATCTGAAAACTTCCGAAACAGTGTTTTTTTAATCACCTAAAATGAGACCAAAACAATTTTTTTCGTAAGAATTATTGTTCTGATAGGAAAGGGGCGGAGTTTCCCTTGTGAGCAGAGAAAAATAGTCTGTAAAACGTTTTGGTGTTTGCTTTTGAGAAAAAAAAACCACTCGTTTTCGATATGATATTTTTTATATACAAAAACGATTAATCAAGTGTCTACGAAAATATTTACATCTTAAAAAATACTTTATGGAGTTCCATCGGTTTACTTGAAAAGTGGAATTTGGAGATCAGTTGAAAAGTTGACACATACAGCAGTGACTAATGAGAATCCTGAAAAACACATTGATGATATGATCCACTAGGGCAATTAGTAAACTAATTATTATTGGTGGCTGAAAAAATGGTGGAGAAGCAGGGAAAAAGTGTCTGCGTCTCCATTGTACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAACTTGTTCGTTTTTCTCAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCGGAAGTTTTCAGATTATTTA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GTAACTTGTTCGTTTTTCTCAAAAATACCACTTTTTCATTTGTTAAATATATATTTTTTAATTCAACTTAAAATTATTTCATTTTAGAACACACTGGTTCTGTAATGGGGCGTTTTTTTTTTGAATAATTCTCATAATGCATATTACTGTAGCTAACCATTTGCTTTCATTTCCTTTTTCTTCTCTCCCATATAAACATTTTTCTGGTTTCAAAGACCTGTTTTCTTGGATAAATAATCTGAAAACTTCCGAA</canonical_amplicon>
		<polymorphic_amplicon>GTAACTTGTTCGTTTTTCTCAAAAATACCACTTTTTCATTTGTTAAATATATATTTTTTAATTCAACTTAAAATTATTTCATTTTAGAACACACTGGTTCTGTAATGGGGCGTTTTTTTTTTGAATAATTCTCATAATGCATATTACTGTAGCTAACCATTTGCTTTCATTTCCTTTTTCTTCTCWCCCATATAAACATTTTTCTGGTTTCAAAGACCTGTTTTCTTGGATAAATAATCTGAAAACTTCCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3207</snp_id>
        <super_contig>c001201154.Contig1</super_contig>
        <contig_pos>29653</contig_pos>
        <strand>+</strand>
        <context>CCGTTGTCAT[C/T]TTTGAAAATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCTCTGTTAGGATAGCTTTGTCTCCCATTTCGCTGGAAACCGTTGTCAT</left_flank>
        <right_flank>TTTGAAAATGGATTAAAGAAAAAGAGAGAAATAAGGCAATAACTAATAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGATATAAAAAAGTGGTCAACTGACAAAATTCTTTTCACAATATCAGAAACAGTCTGTCAGTTAACAGCTTTTTGCTATTCTTTACAGTACCGAGTTAAATGAGAGTAAAAGTTGAAAGTTGATTTTCAAATTAATCACCCATGCCATTCCAGTCAAAATCGACAACTTCAACTGAAACCTTCCGAATCCCAATGCCTCTACAGCTTCATCAACTGTGAATGTCTTCTCTTGATCAGGTGATATTTGATCTGAAGGTTCTCCCAGTTCATTCCGATCATCCAAGTTTGAATATCGCACAGAGAAATCATCTCCAACATGACGAATCCTAAAGGTACGATTTTTAAAAGTTTCGTGAAATGTGAGCAAATATTTGACAAAAATTACTCTTTGATCAACTGTTTCGCTGTTAAATCAACATATGCTTCAGTAAGATTTGATGCTTCCAGAACCTCTGTTAGGATAGCTTTGTCTCCCATTTCGCTGGAAACCGTTGTCATTTTTGAAAATGGATTAAAGAAAAAGAGAGAAATAAGGCAATAACTAATAATGGAAAACCGCAAAAAGTACAATTTATGGATCTCAAAGTTTGGAAGTTTGGAAAGTCTGAAAATTAGGAAACTTTTTTAAAATTCAGTCTATCTCGCGACTTGCAAATTCTAATTTAAACATTTTAATTATGTTAAAAGGGTCAAAATTGCTAGTCTTCTGTCAAACAAATTTCAAAAAAAAGACACCAAATAAAACAAAAGAAAAAAATGAAATCGGATTTGAAAAACCAAATGGGTGGAAGAATAGAGAATTCCTAGTTCTTTTTTTAACAGAATTTTTAAAAAAGAAATTGAAAGTCTAGTGTAAGCCATTTTTGGAAATCGATGATTTTTTTCAAAAACCATTAAAAATTTTTCTCTTGTCGTAAGGGAATGGGAAGATTGCTTTTAAAAAAATGAAATCTAAATTTCAGATTGATAGCCTTGCTTGAAGTCAGAAATCTGAAAATA</canonical>
            <polymorphic>AAGATATAAAAAAGTGGTCAACTGACAAAATTCTTTTCACAATATCAGAAACAGTCTGTCAGTTAACAGCTTTTTGCTATTCTTTACAGTACCGAGTTAAATGAGAGTAAAAGTTGAAAGTTGATTTTCAAATTAATCACCCATGCCATTCCAGTCAAAATCGACAACTTCAACTGAAACCTTCCGAATCCCAATGCCTCTACAGCTTCATCAACTGTGAATGTCTTCTCTTGATCAGGTGATATTTGATCTGAAGGTTCTCCCAGTTCATTCCGATCATCCAAGTTTGAATATCGCACAGAGAAATCATCTCCAACATGACGAATCCTAAAGGTACGATTTTTAAAAGTTTCGTGAAATGTGAGCAAATATTTGACAAAAATTACTCTTTGATCAACTGTTTCGCTGTTAAATCAACATATGCTTCAGTAAGATTTGATGCTTCCAGAACCTCTGTTAGGATAGCTTTGTCTCCCATTTCGCTGGAAACCGTTGTCATYTTTGAAAATGGATTAAAGAAAAAGAGAGAAATAAGGCAATAACTAATAATGGAAAACCGCAAAAAGTACAATTTATGGATCTCAAAGTTTGGAAGTTTGGAAAGTCTGAAAATTAGGAAACTTTTTTAAAATTCAGTCTATCTCGCGACTTGCAAATTCTAATTTAAACATTTTAATTATGTTAAAAGGGTCAAAATTGCTAGTCTTCTGTCAAACAAATTTCAAAAAAAAGACACCAAATAAAACAAAAGAAAAAAATGAAATCGGATTTGAAAAACCAAATGGGTGGAAGAATAGAGAATTCCTAGTTCTTTTTTTAACAGAATTTTTAAAAAAGAAATTGAAAGTCTAGTGTAAGCCATTTTTGGAAATCGATGATTTTTTTCAAAAACCATTAAAAATTTTTCTCTTGTCGTAAGGGAATGGGAAGATTGCTTTTAAAAAAATGAAATCTAAATTTCAGATTGATAGCCTTGCTTGAAGTCAGAAATCTGAAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCTCTGTTAGGATAGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>CAATTTTGACCCTTTTAACATAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AACCTCTGTTAGGATAGCTTTGTCTCCCATTTCGCTGGAAACCGTTGTCATTTTTGAAAATGGATTAAAGAAAAAGAGAGAAATAAGGCAATAACTAATAATGGAAAACCGCAAAAAGTACAATTTATGGATCTCAAAGTTTGGAAGTTTGGAAAGTCTGAAAATTAGGAAACTTTTTTAAAATTCAGTCTATCTCGCGACTTGCAAATTCTAATTTAAACATTTTAATTATGTTAAAAGGGTCAAAATTG</canonical_amplicon>
		<polymorphic_amplicon>AACCTCTGTTAGGATAGCTTTGTCTCCCATTTCGCTGGAAACCGTTGTCATYTTTGAAAATGGATTAAAGAAAAAGAGAGAAATAAGGCAATAACTAATAATGGAAAACCGCAAAAAGTACAATTTATGGATCTCAAAGTTTGGAAGTTTGGAAAGTCTGAAAATTAGGAAACTTTTTTAAAATTCAGTCTATCTCGCGACTTGCAAATTCTAATTTAAACATTTTAATTATGTTAAAAGGGTCAAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3208</snp_id>
        <super_contig>c001201154.Contig1</super_contig>
        <contig_pos>34711</contig_pos>
        <strand>+</strand>
        <context>AAACGAAATT[A/G]TTGGATGTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGGTTTTTGGAAATGGATCACTGACTGTAAATTACCAAGAAACGAAATT</left_flank>
        <right_flank>TTGGATGTTTTAGAAGCTTCGAAATTCACTCAAGGAACCAGTTTCACCAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAAAATCCTCTCCCATTTAGGCTCATCCTTTGTTGTGTTACTCTTTAAATAATATATTATCTTTTATACCAATCATATTATTGCTCATACTTCATTTTTCTTTCCTTTTTCCACCGGAACGATGAATTTCAGTTTTTGCATTTTTAAAAACTTTTTCTTAACGTTCTTTTCGTAAATTATCGTATCTCTCTTTGAGTCGAAAATAATACTGAAGTTCTGAAATACAGGAAATTTGAAAATCAGCTGATTAAAGTCTTTCTTGTCGTGTGGAAATATCTTTAAAATCACAAAAATGCTCTTTTCCAGGTACCATGTTAAAACCATTCTCAATTTTAATATGGATATTTCTAATAAACTTTGCCCGCTCTCTGGATAAGACTGCTCCGGATCTTCCGGGAAAAGTGTGCGCATTTGGAGATTTCAATGCAGATCGGAATACAGATATTCTGGTTTTTGGAAATGGATCACTGACTGTAAATTACCAAGAAACGAAATTGTTGGATGTTTTAGAAGCTTCGAAATTCACTCAAGGAACCAGTTTCACCATCGGAAATGGTAGTTTAAAGCCAGAATCTGTGGAATGTTCAGTTGGAGATTTCAATGGAGATTCTAGATTGGATGTGCTGGTAAGTTTTACATTCGAGAAATTGAGTCGAAACATTTGGCGAAAATGACGATTTTTTTCAACTGATTTTTCAACTAAATAACCGAGATTAACCCAAGTTTTGTTCAGGTTTCAATCCGGGACTCCGGTGGTCTCTACAACCATACTCTGTGGACATCTTTTCTCGAAGGCGACAAAGAAGTGTTCCGTCCATTCCACGTGGATTTTCTAATGCAACATGCCATGACCATTGATGTCACAAATGATGGATTGACTGATATTCTAGGTTTCTATCCGAATGGATCGATGTTTTGTTCAAAAGTTCAGAAGGATGGATCAATGTTCCCAATTGTTGATTCGTGTAACAATGAATTTTCGAATTTCCCGAATAAT</canonical>
            <polymorphic>TTAAAAAATCCTCTCCCATTTAGGCTCATCCTTTGTTGTGTTACTCTTTAAATAATATATTATCTTTTATACCAATCATATTATTGCTCATACTTCATTTTTCTTTCCTTTTTCCACCGGAACGATGAATTTCAGTTTTTGCATTTTTAAAAACTTTTTCTTAACGTTCTTTTCGTAAATTATCGTATCTCTCTTTGAGTCGAAAATAATACTGAAGTTCTGAAATACAGGAAATTTGAAAATCAGCTGATTAAAGTCTTTCTTGTCGTGTGGAAATATCTTTAAAATCACAAAAATGCTCTTTTCCAGGTACCATGTTAAAACCATTCTCAATTTTAATATGGATATTTCTAATAAACTTTGCCCGCTCTCTGGATAAGACTGCTCCGGATCTTCCGGGAAAAGTGTGCGCATTTGGAGATTTCAATGCAGATCGGAATACAGATATTCTGGTTTTTGGAAATGGATCACTGACTGTAAATTACCAAGAAACGAAATTRTTGGATGTTTTAGAAGCTTCGAAATTCACTCAAGGAACCAGTTTCACCATCGGAAATGGTAGTTTAAAGCCAGAATCTGTGGAATGTTCAGTTGGAGATTTCAATGGAGATTCTAGATTGGATGTGCTGGTAAGTTTTACATTCGAGAAATTGAGTCGAAACATTTGGCGAAAATGACGATTTTTTTCAACTGATTTTTCAACTAAATAACCGAGATTAACCCAAGTTTTGTTCAGGTTTCAATCCGGGACTCCGGTGGTCTCTACAACCATACTCTGTGGACATCTTTTCTCGAAGGCGACAAAGAAGTGTTCCGTCCATTCCACGTGGATTTTCTAATGCAACATGCCATGACCATTGATGTCACAAATGATGGATTGACTGATATTCTAGGTTTCTATCCGAATGGATCGATGTTTTGTTCAAAAGTTCAGAAGGATGGATCAATGTTCCCAATTGTTGATTCGTGTAACAATGAATTTTCGAATTTCCCGAATAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGAGATTTCAATGCAGAT</pcr_primer_p1>
		<pcr_primer_p2>TCAATTTCTCGAATGTAAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TTGGAGATTTCAATGCAGATCGGAATACAGATATTCTGGTTTTTGGAAATGGATCACTGACTGTAAATTACCAAGAAACGAAATTGTTGGATGTTTTAGAAGCTTCGAAATTCACTCAAGGAACCAGTTTCACCATCGGAAATGGTAGTTTAAAGCCAGAATCTGTGGAATGTTCAGTTGGAGATTTCAATGGAGATTCTAGATTGGATGTGCTGGTAAGTTTTACATTCGAGAAATTGA</canonical_amplicon>
		<polymorphic_amplicon>TTGGAGATTTCAATGCAGATCGGAATACAGATATTCTGGTTTTTGGAAATGGATCACTGACTGTAAATTACCAAGAAACGAAATTRTTGGATGTTTTAGAAGCTTCGAAATTCACTCAAGGAACCAGTTTCACCATCGGAAATGGTAGTTTAAAGCCAGAATCTGTGGAATGTTCAGTTGGAGATTTCAATGGAGATTCTAGATTGGATGTGCTGGTAAGTTTTACATTCGAGAAATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3209</snp_id>
        <super_contig>c001201154.Contig1</super_contig>
        <contig_pos>34742</contig_pos>
        <strand>+</strand>
        <context>GAAATTCACT[C/G]AAGGAACCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTACCAAGAAACGAAATTGTTGGATGTTTTAGAAGCTTCGAAATTCACT</left_flank>
        <right_flank>AAGGAACCAGTTTCACCATCGGAAATGGTAGTTTAAAGCCAGAATCTGTG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGTTGTGTTACTCTTTAAATAATATATTATCTTTTATACCAATCATATTATTGCTCATACTTCATTTTTCTTTCCTTTTTCCACCGGAACGATGAATTTCAGTTTTTGCATTTTTAAAAACTTTTTCTTAACGTTCTTTTCGTAAATTATCGTATCTCTCTTTGAGTCGAAAATAATACTGAAGTTCTGAAATACAGGAAATTTGAAAATCAGCTGATTAAAGTCTTTCTTGTCGTGTGGAAATATCTTTAAAATCACAAAAATGCTCTTTTCCAGGTACCATGTTAAAACCATTCTCAATTTTAATATGGATATTTCTAATAAACTTTGCCCGCTCTCTGGATAAGACTGCTCCGGATCTTCCGGGAAAAGTGTGCGCATTTGGAGATTTCAATGCAGATCGGAATACAGATATTCTGGTTTTTGGAAATGGATCACTGACTGTAAATTACCAAGAAACGAAATTGTTGGATGTTTTAGAAGCTTCGAAATTCACTCAAGGAACCAGTTTCACCATCGGAAATGGTAGTTTAAAGCCAGAATCTGTGGAATGTTCAGTTGGAGATTTCAATGGAGATTCTAGATTGGATGTGCTGGTAAGTTTTACATTCGAGAAATTGAGTCGAAACATTTGGCGAAAATGACGATTTTTTTCAACTGATTTTTCAACTAAATAACCGAGATTAACCCAAGTTTTGTTCAGGTTTCAATCCGGGACTCCGGTGGTCTCTACAACCATACTCTGTGGACATCTTTTCTCGAAGGCGACAAAGAAGTGTTCCGTCCATTCCACGTGGATTTTCTAATGCAACATGCCATGACCATTGATGTCACAAATGATGGATTGACTGATATTCTAGGTTTCTATCCGAATGGATCGATGTTTTGTTCAAAAGTTCAGAAGGATGGATCAATGTTCCCAATTGTTGATTCGTGTAACAATGAATTTTCGAATTTCCCGAATAATATAGATATCTATGCAGGAATGCCACACCTAT</canonical>
            <polymorphic>TTTGTTGTGTTACTCTTTAAATAATATATTATCTTTTATACCAATCATATTATTGCTCATACTTCATTTTTCTTTCCTTTTTCCACCGGAACGATGAATTTCAGTTTTTGCATTTTTAAAAACTTTTTCTTAACGTTCTTTTCGTAAATTATCGTATCTCTCTTTGAGTCGAAAATAATACTGAAGTTCTGAAATACAGGAAATTTGAAAATCAGCTGATTAAAGTCTTTCTTGTCGTGTGGAAATATCTTTAAAATCACAAAAATGCTCTTTTCCAGGTACCATGTTAAAACCATTCTCAATTTTAATATGGATATTTCTAATAAACTTTGCCCGCTCTCTGGATAAGACTGCTCCGGATCTTCCGGGAAAAGTGTGCGCATTTGGAGATTTCAATGCAGATCGGAATACAGATATTCTGGTTTTTGGAAATGGATCACTGACTGTAAATTACCAAGAAACGAAATTGTTGGATGTTTTAGAAGCTTCGAAATTCACTSAAGGAACCAGTTTCACCATCGGAAATGGTAGTTTAAAGCCAGAATCTGTGGAATGTTCAGTTGGAGATTTCAATGGAGATTCTAGATTGGATGTGCTGGTAAGTTTTACATTCGAGAAATTGAGTCGAAACATTTGGCGAAAATGACGATTTTTTTCAACTGATTTTTCAACTAAATAACCGAGATTAACCCAAGTTTTGTTCAGGTTTCAATCCGGGACTCCGGTGGTCTCTACAACCATACTCTGTGGACATCTTTTCTCGAAGGCGACAAAGAAGTGTTCCGTCCATTCCACGTGGATTTTCTAATGCAACATGCCATGACCATTGATGTCACAAATGATGGATTGACTGATATTCTAGGTTTCTATCCGAATGGATCGATGTTTTGTTCAAAAGTTCAGAAGGATGGATCAATGTTCCCAATTGTTGATTCGTGTAACAATGAATTTTCGAATTTCCCGAATAATATAGATATCTATGCAGGAATGCCACACCTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCACTGACTGTAAATTACCAAGA</pcr_primer_p1>
		<pcr_primer_p2>CGGTTATTTAGTTGAAAAATCAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATCACTGACTGTAAATTACCAAGAAACGAAATTGTTGGATGTTTTAGAAGCTTCGAAATTCACTCAAGGAACCAGTTTCACCATCGGAAATGGTAGTTTAAAGCCAGAATCTGTGGAATGTTCAGTTGGAGATTTCAATGGAGATTCTAGATTGGATGTGCTGGTAAGTTTTACATTCGAGAAATTGAGTCGAAACATTTGGCGAAAATGACGATTTTTTTCAACTGATTTTTCAACTAAATAACCG</canonical_amplicon>
		<polymorphic_amplicon>ATCACTGACTGTAAATTACCAAGAAACGAAATTGTTGGATGTTTTAGAAGCTTCGAAATTCACTSAAGGAACCAGTTTCACCATCGGAAATGGTAGTTTAAAGCCAGAATCTGTGGAATGTTCAGTTGGAGATTTCAATGGAGATTCTAGATTGGATGTGCTGGTAAGTTTTACATTCGAGAAATTGAGTCGAAACATTTGGCGAAAATGACGATTTTTTTCAACTGATTTTTCAACTAAATAACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3210</snp_id>
        <super_contig>c001201154.Contig1</super_contig>
        <contig_pos>34867</contig_pos>
        <strand>+</strand>
        <context>AGAAATTGAG[C/T]CGAAACATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAGATTCTAGATTGGATGTGCTGGTAAGTTTTACATTCGAGAAATTGAG</left_flank>
        <right_flank>CGAAACATTTGGCGAAAATGACGATTTTTTTCAACTGATTTTTCAACTAA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTTAACGTTCTTTTCGTAAATTATCGTATCTCTCTTTGAGTCGAAAATAATACTGAAGTTCTGAAATACAGGAAATTTGAAAATCAGCTGATTAAAGTCTTTCTTGTCGTGTGGAAATATCTTTAAAATCACAAAAATGCTCTTTTCCAGGTACCATGTTAAAACCATTCTCAATTTTAATATGGATATTTCTAATAAACTTTGCCCGCTCTCTGGATAAGACTGCTCCGGATCTTCCGGGAAAAGTGTGCGCATTTGGAGATTTCAATGCAGATCGGAATACAGATATTCTGGTTTTTGGAAATGGATCACTGACTGTAAATTACCAAGAAACGAAATTGTTGGATGTTTTAGAAGCTTCGAAATTCACTCAAGGAACCAGTTTCACCATCGGAAATGGTAGTTTAAAGCCAGAATCTGTGGAATGTTCAGTTGGAGATTTCAATGGAGATTCTAGATTGGATGTGCTGGTAAGTTTTACATTCGAGAAATTGAGTCGAAACATTTGGCGAAAATGACGATTTTTTTCAACTGATTTTTCAACTAAATAACCGAGATTAACCCAAGTTTTGTTCAGGTTTCAATCCGGGACTCCGGTGGTCTCTACAACCATACTCTGTGGACATCTTTTCTCGAAGGCGACAAAGAAGTGTTCCGTCCATTCCACGTGGATTTTCTAATGCAACATGCCATGACCATTGATGTCACAAATGATGGATTGACTGATATTCTAGGTTTCTATCCGAATGGATCGATGTTTTGTTCAAAAGTTCAGAAGGATGGATCAATGTTCCCAATTGTTGATTCGTGTAACAATGAATTTTCGAATTTCCCGAATAATATAGATATCTATGCAGGAATGCCACACCTATTTGTGGATATTAATTGTGAGTGGATTACTGTATTCGGGGGTAATAATATGTTTGTTTTCAGCTGATCTCATCGCCGACATAGTTTTCATGACAAAAGAGCAGAATGGACTGAAAATGATGGTGAG</canonical>
            <polymorphic>TTTCTTAACGTTCTTTTCGTAAATTATCGTATCTCTCTTTGAGTCGAAAATAATACTGAAGTTCTGAAATACAGGAAATTTGAAAATCAGCTGATTAAAGTCTTTCTTGTCGTGTGGAAATATCTTTAAAATCACAAAAATGCTCTTTTCCAGGTACCATGTTAAAACCATTCTCAATTTTAATATGGATATTTCTAATAAACTTTGCCCGCTCTCTGGATAAGACTGCTCCGGATCTTCCGGGAAAAGTGTGCGCATTTGGAGATTTCAATGCAGATCGGAATACAGATATTCTGGTTTTTGGAAATGGATCACTGACTGTAAATTACCAAGAAACGAAATTGTTGGATGTTTTAGAAGCTTCGAAATTCACTCAAGGAACCAGTTTCACCATCGGAAATGGTAGTTTAAAGCCAGAATCTGTGGAATGTTCAGTTGGAGATTTCAATGGAGATTCTAGATTGGATGTGCTGGTAAGTTTTACATTCGAGAAATTGAGYCGAAACATTTGGCGAAAATGACGATTTTTTTCAACTGATTTTTCAACTAAATAACCGAGATTAACCCAAGTTTTGTTCAGGTTTCAATCCGGGACTCCGGTGGTCTCTACAACCATACTCTGTGGACATCTTTTCTCGAAGGCGACAAAGAAGTGTTCCGTCCATTCCACGTGGATTTTCTAATGCAACATGCCATGACCATTGATGTCACAAATGATGGATTGACTGATATTCTAGGTTTCTATCCGAATGGATCGATGTTTTGTTCAAAAGTTCAGAAGGATGGATCAATGTTCCCAATTGTTGATTCGTGTAACAATGAATTTTCGAATTTCCCGAATAATATAGATATCTATGCAGGAATGCCACACCTATTTGTGGATATTAATTGTGAGTGGATTACTGTATTCGGGGGTAATAATATGTTTGTTTTCAGCTGATCTCATCGCCGACATAGTTTTCATGACAAAAGAGCAGAATGGACTGAAAATGATGGTGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>319 172 136 124 119 72 45 13</canonical_bands>
                <polymorphic_bands>319 172 149 124 119 72 45</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>376 213 194 96 44 41 36</canonical_bands>
                <polymorphic_bands>376 213 194 140 41 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCACTGACTGTAAATTACCAAGA</pcr_primer_p1>
		<pcr_primer_p2>CGGTTATTTAGTTGAAAAATCAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATCACTGACTGTAAATTACCAAGAAACGAAATTGTTGGATGTTTTAGAAGCTTCGAAATTCACTCAAGGAACCAGTTTCACCATCGGAAATGGTAGTTTAAAGCCAGAATCTGTGGAATGTTCAGTTGGAGATTTCAATGGAGATTCTAGATTGGATGTGCTGGTAAGTTTTACATTCGAGAAATTGAGTCGAAACATTTGGCGAAAATGACGATTTTTTTCAACTGATTTTTCAACTAAATAACCG</canonical_amplicon>
		<polymorphic_amplicon>ATCACTGACTGTAAATTACCAAGAAACGAAATTGTTGGATGTTTTAGAAGCTTCGAAATTCACTCAAGGAACCAGTTTCACCATCGGAAATGGTAGTTTAAAGCCAGAATCTGTGGAATGTTCAGTTGGAGATTTCAATGGAGATTCTAGATTGGATGTGCTGGTAAGTTTTACATTCGAGAAATTGAGYCGAAACATTTGGCGAAAATGACGATTTTTTTCAACTGATTTTTCAACTAAATAACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3211</snp_id>
        <super_contig>c001201154.Contig1</super_contig>
        <contig_pos>34901</contig_pos>
        <strand>+</strand>
        <context>ATTTTTTTCA[A/T]CTGATTTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATTCGAGAAATTGAGTCGAAACATTTGGCGAAAATGACGATTTTTTTCA</left_flank>
        <right_flank>CTGATTTTTCAACTAAATAACCGAGATTAACCCAAGTTTTGTTCAGGTTT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTTTGAGTCGAAAATAATACTGAAGTTCTGAAATACAGGAAATTTGAAAATCAGCTGATTAAAGTCTTTCTTGTCGTGTGGAAATATCTTTAAAATCACAAAAATGCTCTTTTCCAGGTACCATGTTAAAACCATTCTCAATTTTAATATGGATATTTCTAATAAACTTTGCCCGCTCTCTGGATAAGACTGCTCCGGATCTTCCGGGAAAAGTGTGCGCATTTGGAGATTTCAATGCAGATCGGAATACAGATATTCTGGTTTTTGGAAATGGATCACTGACTGTAAATTACCAAGAAACGAAATTGTTGGATGTTTTAGAAGCTTCGAAATTCACTCAAGGAACCAGTTTCACCATCGGAAATGGTAGTTTAAAGCCAGAATCTGTGGAATGTTCAGTTGGAGATTTCAATGGAGATTCTAGATTGGATGTGCTGGTAAGTTTTACATTCGAGAAATTGAGTCGAAACATTTGGCGAAAATGACGATTTTTTTCAACTGATTTTTCAACTAAATAACCGAGATTAACCCAAGTTTTGTTCAGGTTTCAATCCGGGACTCCGGTGGTCTCTACAACCATACTCTGTGGACATCTTTTCTCGAAGGCGACAAAGAAGTGTTCCGTCCATTCCACGTGGATTTTCTAATGCAACATGCCATGACCATTGATGTCACAAATGATGGATTGACTGATATTCTAGGTTTCTATCCGAATGGATCGATGTTTTGTTCAAAAGTTCAGAAGGATGGATCAATGTTCCCAATTGTTGATTCGTGTAACAATGAATTTTCGAATTTCCCGAATAATATAGATATCTATGCAGGAATGCCACACCTATTTGTGGATATTAATTGTGAGTGGATTACTGTATTCGGGGGTAATAATATGTTTGTTTTCAGCTGATCTCATCGCCGACATAGTTTTCATGACAAAAGAGCAGAATGGACTGAAAATGATGGTGAGCTTCCGAAATCCTCTAAATCATCCCAGATCCCCC</canonical>
            <polymorphic>CTCTTTGAGTCGAAAATAATACTGAAGTTCTGAAATACAGGAAATTTGAAAATCAGCTGATTAAAGTCTTTCTTGTCGTGTGGAAATATCTTTAAAATCACAAAAATGCTCTTTTCCAGGTACCATGTTAAAACCATTCTCAATTTTAATATGGATATTTCTAATAAACTTTGCCCGCTCTCTGGATAAGACTGCTCCGGATCTTCCGGGAAAAGTGTGCGCATTTGGAGATTTCAATGCAGATCGGAATACAGATATTCTGGTTTTTGGAAATGGATCACTGACTGTAAATTACCAAGAAACGAAATTGTTGGATGTTTTAGAAGCTTCGAAATTCACTCAAGGAACCAGTTTCACCATCGGAAATGGTAGTTTAAAGCCAGAATCTGTGGAATGTTCAGTTGGAGATTTCAATGGAGATTCTAGATTGGATGTGCTGGTAAGTTTTACATTCGAGAAATTGAGTCGAAACATTTGGCGAAAATGACGATTTTTTTCAWCTGATTTTTCAACTAAATAACCGAGATTAACCCAAGTTTTGTTCAGGTTTCAATCCGGGACTCCGGTGGTCTCTACAACCATACTCTGTGGACATCTTTTCTCGAAGGCGACAAAGAAGTGTTCCGTCCATTCCACGTGGATTTTCTAATGCAACATGCCATGACCATTGATGTCACAAATGATGGATTGACTGATATTCTAGGTTTCTATCCGAATGGATCGATGTTTTGTTCAAAAGTTCAGAAGGATGGATCAATGTTCCCAATTGTTGATTCGTGTAACAATGAATTTTCGAATTTCCCGAATAATATAGATATCTATGCAGGAATGCCACACCTATTTGTGGATATTAATTGTGAGTGGATTACTGTATTCGGGGGTAATAATATGTTTGTTTTCAGCTGATCTCATCGCCGACATAGTTTTCATGACAAAAGAGCAGAATGGACTGAAAATGATGGTGAGCTTCCGAAATCCTCTAAATCATCCCAGATCCCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGGTAGTTTAAAGCCAGAATC</pcr_primer_p1>
		<pcr_primer_p2>AGAAAAGATGTCCACAGAGTATG</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AATGGTAGTTTAAAGCCAGAATCTGTGGAATGTTCAGTTGGAGATTTCAATGGAGATTCTAGATTGGATGTGCTGGTAAGTTTTACATTCGAGAAATTGAGTCGAAACATTTGGCGAAAATGACGATTTTTTTCAACTGATTTTTCAACTAAATAACCGAGATTAACCCAAGTTTTGTTCAGGTTTCAATCCGGGACTCCGGTGGTCTCTACAACCATACTCTGTGGACATCTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>AATGGTAGTTTAAAGCCAGAATCTGTGGAATGTTCAGTTGGAGATTTCAATGGAGATTCTAGATTGGATGTGCTGGTAAGTTTTACATTCGAGAAATTGAGTCGAAACATTTGGCGAAAATGACGATTTTTTTCAWCTGATTTTTCAACTAAATAACCGAGATTAACCCAAGTTTTGTTCAGGTTTCAATCCGGGACTCCGGTGGTCTCTACAACCATACTCTGTGGACATCTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3212</snp_id>
        <super_contig>c001201154.Contig1</super_contig>
        <contig_pos>36384</contig_pos>
        <strand>+</strand>
        <context>TCGCTATTCC[A/G]AAATACGCGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTGAATATTTCAAAAATTCACAATGCTTTCAGCTCAACATCGCTATTCC</left_flank>
        <right_flank>AAATACGCGGATCGCAAAGAGGACTGGAAGCACAGTTTGAAACAAATCGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTCAACCCAAAAACATGGCGTTGGGAATTATTAAAATGGGAACATTTTTTGATTTATTAGAAGATGGATCACTCGATTTATTGGTTGAATATGATTTGGGAAATGAGACACGATTTGGATTTGTGTATTGTCCTGATAAGGGAGATACTACGTTTTTGAAGGTTGTTTATTTCTCGGTCTTTTTTTTCAAATTTCGTTTATTTTCCAGGTCCAAGTCTTCACAGGCGTTTGCAGCGATAATCGTTGCAATCCAAAATCGAATGAAATTGGTTCAAGTATCTCAATGACTGGTGCCTGTGCATCATTCTCGATGACCGATGGATGGGGTGGAAGTACTCAAAGTGTTGCATGTCAAGTTCCAGCTTCTTCAAATCGAGCACTTTATCTACCATTCTTGCTTTACGGTCTTGGAAGAAGTCCCAATTTTGTTGATGAGGTAAGCTAAAAAGTGAATATTTCAAAAATTCACAATGCTTTCAGCTCAACATCGCTATTCCGAAATACGCGGATCGCAAAGAGGACTGGAAGCACAGTTTGAAACAAATCGTTCCGAATTCCCGTATCATTGTTCTGCCACCGTCTCCTGAGTATCCACACTGGACTAGTCGGCTCTATGTTACACCATCAGCACTTATTGTACAGGTTAGTTTTGAAAAGAAAATGATGAAAACCTCAAAACTCCCATGCATAAATTTCACTCTCAGCTCGGAAACCTCTCGGTTTTCTAGTCTGTAAAAAATGCCAATTTCAGAGTCTCGCTGTGATTGCCCTGGTATGCTGTATGCTTCTGATGGTTGTTGTATTTTTGCACTATCGGGAGAAAAAAGAAGATCGCTACGAGCGACAACAACAATCGCATCGATTCCATTTCGATGCAATGTAGAAAACTTGCTCTATCGAAAAACAATGTATTATTCATTCGAAACTTTATATAACCTAGATATCATATCGTTTCTTTGTTCCATCAAAAAACCTTTTTTAAACGGGTATTAAGCATA</canonical>
            <polymorphic>CATTCAACCCAAAAACATGGCGTTGGGAATTATTAAAATGGGAACATTTTTTGATTTATTAGAAGATGGATCACTCGATTTATTGGTTGAATATGATTTGGGAAATGAGACACGATTTGGATTTGTGTATTGTCCTGATAAGGGAGATACTACGTTTTTGAAGGTTGTTTATTTCTCGGTCTTTTTTTTCAAATTTCGTTTATTTTCCAGGTCCAAGTCTTCACAGGCGTTTGCAGCGATAATCGTTGCAATCCAAAATCGAATGAAATTGGTTCAAGTATCTCAATGACTGGTGCCTGTGCATCATTCTCGATGACCGATGGATGGGGTGGAAGTACTCAAAGTGTTGCATGTCAAGTTCCAGCTTCTTCAAATCGAGCACTTTATCTACCATTCTTGCTTTACGGTCTTGGAAGAAGTCCCAATTTTGTTGATGAGGTAAGCTAAAAAGTGAATATTTCAAAAATTCACAATGCTTTCAGCTCAACATCGCTATTCCRAAATACGCGGATCGCAAAGAGGACTGGAAGCACAGTTTGAAACAAATCGTTCCGAATTCCCGTATCATTGTTCTGCCACCGTCTCCTGAGTATCCACACTGGACTAGTCGGCTCTATGTTACACCATCAGCACTTATTGTACAGGTTAGTTTTGAAAAGAAAATGATGAAAACCTCAAAACTCCCATGCATAAATTTCACTCTCAGCTCGGAAACCTCTCGGTTTTCTAGTCTGTAAAAAATGCCAATTTCAGAGTCTCGCTGTGATTGCCCTGGTATGCTGTATGCTTCTGATGGTTGTTGTATTTTTGCACTATCGGGAGAAAAAAGAAGATCGCTACGAGCGACAACAACAATCGCATCGATTCCATTTCGATGCAATGTAGAAAACTTGCTCTATCGAAAAACAATGTATTATTCATTCGAAACTTTATATAACCTAGATATCATATCGTTTCTTTGTTCCATCAAAAAACCTTTTTTAAACGGGTATTAAGCATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>499 209 157 54 42 39</canonical_bands>
                <polymorphic_bands>553 209 157 42 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTTGTTGATGAGGTAAGCTA</pcr_primer_p1>
		<pcr_primer_p2>TTCATCATTTTCTTTTCAAAACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATTTTGTTGATGAGGTAAGCTAAAAAGTGAATATTTCAAAAATTCACAATGCTTTCAGCTCAACATCGCTATTCCGAAATACGCGGATCGCAAAGAGGACTGGAAGCACAGTTTGAAACAAATCGTTCCGAATTCCCGTATCATTGTTCTGCCACCGTCTCCTGAGTATCCACACTGGACTAGTCGGCTCTATGTTACACCATCAGCACTTATTGTACAGGTTAGTTTTGAAAAGAAAATGATGAA</canonical_amplicon>
		<polymorphic_amplicon>AATTTTGTTGATGAGGTAAGCTAAAAAGTGAATATTTCAAAAATTCACAATGCTTTCAGCTCAACATCGCTATTCCRAAATACGCGGATCGCAAAGAGGACTGGAAGCACAGTTTGAAACAAATCGTTCCGAATTCCCGTATCATTGTTCTGCCACCGTCTCCTGAGTATCCACACTGGACTAGTCGGCTCTATGTTACACCATCAGCACTTATTGTACAGGTTAGTTTTGAAAAGAAAATGATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3213</snp_id>
        <super_contig>c001201154.Contig1</super_contig>
        <contig_pos>36335</contig_pos>
        <strand>+</strand>
        <context>AAGCTAAAAA[A/G]TGAATATTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTACGGTCTTGGAAGAAGTCCCAATTTTGTTGATGAGGTAAGCTAAAAA</left_flank>
        <right_flank>TGAATATTTCAAAAATTCACAATGCTTTCAGCTCAACATCGCTATTCCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGTGAAAAGAACGGGACTCGTCGATTCGATATCCGGAAAGGAGAATTCATTCAACCCAAAAACATGGCGTTGGGAATTATTAAAATGGGAACATTTTTTGATTTATTAGAAGATGGATCACTCGATTTATTGGTTGAATATGATTTGGGAAATGAGACACGATTTGGATTTGTGTATTGTCCTGATAAGGGAGATACTACGTTTTTGAAGGTTGTTTATTTCTCGGTCTTTTTTTTCAAATTTCGTTTATTTTCCAGGTCCAAGTCTTCACAGGCGTTTGCAGCGATAATCGTTGCAATCCAAAATCGAATGAAATTGGTTCAAGTATCTCAATGACTGGTGCCTGTGCATCATTCTCGATGACCGATGGATGGGGTGGAAGTACTCAAAGTGTTGCATGTCAAGTTCCAGCTTCTTCAAATCGAGCACTTTATCTACCATTCTTGCTTTACGGTCTTGGAAGAAGTCCCAATTTTGTTGATGAGGTAAGCTAAAAAGTGAATATTTCAAAAATTCACAATGCTTTCAGCTCAACATCGCTATTCCGAAATACGCGGATCGCAAAGAGGACTGGAAGCACAGTTTGAAACAAATCGTTCCGAATTCCCGTATCATTGTTCTGCCACCGTCTCCTGAGTATCCACACTGGACTAGTCGGCTCTATGTTACACCATCAGCACTTATTGTACAGGTTAGTTTTGAAAAGAAAATGATGAAAACCTCAAAACTCCCATGCATAAATTTCACTCTCAGCTCGGAAACCTCTCGGTTTTCTAGTCTGTAAAAAATGCCAATTTCAGAGTCTCGCTGTGATTGCCCTGGTATGCTGTATGCTTCTGATGGTTGTTGTATTTTTGCACTATCGGGAGAAAAAAGAAGATCGCTACGAGCGACAACAACAATCGCATCGATTCCATTTCGATGCAATGTAGAAAACTTGCTCTATCGAAAAACAATGTATTATTCATTCGAAACTTTATATAACCTAGATATCATAT</canonical>
            <polymorphic>ATTGTGAAAAGAACGGGACTCGTCGATTCGATATCCGGAAAGGAGAATTCATTCAACCCAAAAACATGGCGTTGGGAATTATTAAAATGGGAACATTTTTTGATTTATTAGAAGATGGATCACTCGATTTATTGGTTGAATATGATTTGGGAAATGAGACACGATTTGGATTTGTGTATTGTCCTGATAAGGGAGATACTACGTTTTTGAAGGTTGTTTATTTCTCGGTCTTTTTTTTCAAATTTCGTTTATTTTCCAGGTCCAAGTCTTCACAGGCGTTTGCAGCGATAATCGTTGCAATCCAAAATCGAATGAAATTGGTTCAAGTATCTCAATGACTGGTGCCTGTGCATCATTCTCGATGACCGATGGATGGGGTGGAAGTACTCAAAGTGTTGCATGTCAAGTTCCAGCTTCTTCAAATCGAGCACTTTATCTACCATTCTTGCTTTACGGTCTTGGAAGAAGTCCCAATTTTGTTGATGAGGTAAGCTAAAAARTGAATATTTCAAAAATTCACAATGCTTTCAGCTCAACATCGCTATTCCGAAATACGCGGATCGCAAAGAGGACTGGAAGCACAGTTTGAAACAAATCGTTCCGAATTCCCGTATCATTGTTCTGCCACCGTCTCCTGAGTATCCACACTGGACTAGTCGGCTCTATGTTACACCATCAGCACTTATTGTACAGGTTAGTTTTGAAAAGAAAATGATGAAAACCTCAAAACTCCCATGCATAAATTTCACTCTCAGCTCGGAAACCTCTCGGTTTTCTAGTCTGTAAAAAATGCCAATTTCAGAGTCTCGCTGTGATTGCCCTGGTATGCTGTATGCTTCTGATGGTTGTTGTATTTTTGCACTATCGGGAGAAAAAAGAAGATCGCTACGAGCGACAACAACAATCGCATCGATTCCATTTCGATGCAATGTAGAAAACTTGCTCTATCGAAAAACAATGTATTATTCATTCGAAACTTTATATAACCTAGATATCATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>139 116 96 72 72 67 66 62 47 46 39 35 30 25 18 17 15 15 9 6 6 2</canonical_bands>
                <polymorphic_bands>139 116 96 89 72 67 66 62 47 46 39 35 30 25 18 15 15 9 6 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATCTACCATTCTTGCTTTACG</pcr_primer_p1>
		<pcr_primer_p2>AGTGCTGATGGTGTAACATAGAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTATCTACCATTCTTGCTTTACGGTCTTGGAAGAAGTCCCAATTTTGTTGATGAGGTAAGCTAAAAAGTGAATATTTCAAAAATTCACAATGCTTTCAGCTCAACATCGCTATTCCGAAATACGCGGATCGCAAAGAGGACTGGAAGCACAGTTTGAAACAAATCGTTCCGAATTCCCGTATCATTGTTCTGCCACCGTCTCCTGAGTATCCACACTGGACTAGTCGGCTCTATGTTACACCATCAGCACT</canonical_amplicon>
		<polymorphic_amplicon>TTATCTACCATTCTTGCTTTACGGTCTTGGAAGAAGTCCCAATTTTGTTGATGAGGTAAGCTAAAAARTGAATATTTCAAAAATTCACAATGCTTTCAGCTCAACATCGCTATTCCGAAATACGCGGATCGCAAAGAGGACTGGAAGCACAGTTTGAAACAAATCGTTCCGAATTCCCGTATCATTGTTCTGCCACCGTCTCCTGAGTATCCACACTGGACTAGTCGGCTCTATGTTACACCATCAGCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3299</snp_id>
        <super_contig>c001201229.Contig1</super_contig>
        <contig_pos>40781</contig_pos>
        <strand>+</strand>
        <context>ACAAAGACGA[C/T]AAATTGGTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGTTTTCAGTTGTGATGGAATGCGAGAGGAACGAATTGGACAAAGACGA</left_flank>
        <right_flank>AAATTGGTATCTTCTCTAACTGCTTTATGAATTTTAATAAAAATTGACAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGTAGTACAATCTTCTCGAAAATTGAAAATATTTCATTTCCGAGTTCAATTTATTTTGGAATCATCACAATGACTCTAATCGGATTAGGAGATATCGTACCAACTAATCTTGTCTGGTTCAGTGCATATTGTGCCTTCTTCTTAATATCTGATGTTCTATCAAATCAGATTTTTTATTTTTGCCAAGTGAGGGATATCGATTTTACTAAAAATGTCTTCATTTTTTTCAGGCTCGGATAAGATTTTTCTTCCATTTCATTGCTCGAAGACTTTTACTCCTCAAAGACGGTGATGACGATTTGCTATCAGAATCTACAGTATCCCTTCAGAATGTTCCAGTAATCAATAGTCAATGTATGCCGAGTCGTAAGTTTATATTCAGAAGTTATTCAAAATTCAGAAATTCCGAAATTCGTAACTTCAGAAATTTAGAATTTTAGAAATTCAGTGTTTTCAGTTGTGATGGAATGCGAGAGGAACGAATTGGACAAAGACGATAAATTGGTATCTTCTCTAACTGCTTTATGAATTTTAATAAAAATTGACAAAGTCTACAATAACCGTACAATTAAAAAACCATAATAAAATGTGAGCTAAAAAAGAAATGTTGAAAGAGAAAATGGGAAATTTGGAATATAAATGAAAGACGATTTTCGATTGTTGATAACCCGTTTAAAAAAGTATTAATCAATATTCAATCACACAGTGTCCACCAAGTTTTGACGTCTTCTAATTGTTTTTCATGTGACATTTGTATCACATCGGATCCAGAATACTCAAATGAAGATCTTCTGACTTCTGCATCTGTATCTTCGTCTTCTTCAACTTCTTCTAGTTCATCATAAGTTCCCATTTGCATTTGGCGAAGTGTGCCACGTCTCTCCTTGATTTTGTCAGCTCCTCGTTTCACACTCTTCTTTTGTGCTTCGGTTACAATCTAGAAACATTTAAATGTTTGAATGTTTGCTGAATGAAAACAAAAACCTCAGTAATGGAAT</canonical>
            <polymorphic>TCTGTAGTACAATCTTCTCGAAAATTGAAAATATTTCATTTCCGAGTTCAATTTATTTTGGAATCATCACAATGACTCTAATCGGATTAGGAGATATCGTACCAACTAATCTTGTCTGGTTCAGTGCATATTGTGCCTTCTTCTTAATATCTGATGTTCTATCAAATCAGATTTTTTATTTTTGCCAAGTGAGGGATATCGATTTTACTAAAAATGTCTTCATTTTTTTCAGGCTCGGATAAGATTTTTCTTCCATTTCATTGCTCGAAGACTTTTACTCCTCAAAGACGGTGATGACGATTTGCTATCAGAATCTACAGTATCCCTTCAGAATGTTCCAGTAATCAATAGTCAATGTATGCCGAGTCGTAAGTTTATATTCAGAAGTTATTCAAAATTCAGAAATTCCGAAATTCGTAACTTCAGAAATTTAGAATTTTAGAAATTCAGTGTTTTCAGTTGTGATGGAATGCGAGAGGAACGAATTGGACAAAGACGAYAAATTGGTATCTTCTCTAACTGCTTTATGAATTTTAATAAAAATTGACAAAGTCTACAATAACCGTACAATTAAAAAACCATAATAAAATGTGAGCTAAAAAAGAAATGTTGAAAGAGAAAATGGGAAATTTGGAATATAAATGAAAGACGATTTTCGATTGTTGATAACCCGTTTAAAAAAGTATTAATCAATATTCAATCACACAGTGTCCACCAAGTTTTGACGTCTTCTAATTGTTTTTCATGTGACATTTGTATCACATCGGATCCAGAATACTCAAATGAAGATCTTCTGACTTCTGCATCTGTATCTTCGTCTTCTTCAACTTCTTCTAGTTCATCATAAGTTCCCATTTGCATTTGGCGAAGTGTGCCACGTCTCTCCTTGATTTTGTCAGCTCCTCGTTTCACACTCTTCTTTTGTGCTTCGGTTACAATCTAGAAACATTTAAATGTTTGAATGTTTGCTGAATGAAAACAAAAACCTCAGTAATGGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTACAGTATCCCTTCAGAATGTT</pcr_primer_p1>
		<pcr_primer_p2>CGGTTATTGTAGACTTTGTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTACAGTATCCCTTCAGAATGTTCCAGTAATCAATAGTCAATGTATGCCGAGTCGTAAGTTTATATTCAGAAGTTATTCAAAATTCAGAAATTCCGAAATTCGTAACTTCAGAAATTTAGAATTTTAGAAATTCAGTGTTTTCAGTTGTGATGGAATGCGAGAGGAACGAATTGGACAAAGACGATAAATTGGTATCTTCTCTAACTGCTTTATGAATTTTAATAAAAATTGACAAAGTCTACAATAACCG</canonical_amplicon>
		<polymorphic_amplicon>CTACAGTATCCCTTCAGAATGTTCCAGTAATCAATAGTCAATGTATGCCGAGTCGTAAGTTTATATTCAGAAGTTATTCAAAATTCAGAAATTCCGAAATTCGTAACTTCAGAAATTTAGAATTTTAGAAATTCAGTGTTTTCAGTTGTGATGGAATGCGAGAGGAACGAATTGGACAAAGACGAYAAATTGGTATCTTCTCTAACTGCTTTATGAATTTTAATAAAAATTGACAAAGTCTACAATAACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3356</snp_id>
        <super_contig>c001201229.Contig1</super_contig>
        <contig_pos>41788</contig_pos>
        <strand>+</strand>
        <context>GAGGCGTCCC[C/T]GGCTGGCGCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAGTATTTTTCAGCCTATTATCTTACAAAAGCAGTACCCGAGGCGTCCC</left_flank>
        <right_flank>GGCTGGCGCGCCTCCCGCGCGTCTCTGTCGCTCCGCGCTTCCTTTCTGAT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGACGCCTTCTTTTTTCCACTTCCTCTTTCTCCTTGTAATGATTCTTCGTCAGGAGATGCTTCTGTTAAAAACACTCCTTTTGTCAATACATCTTGCTGTGGGAAGGCAAATGTTGATCCAATTGAACTCATTTTCCCAAGAGTCTGAAACTCATTCAAAATTTTAGACATGTTCGGTTTTGATTGTTGTTCCTTACATTATTTTGTTTCGCTTTGATATTTTTAAGACAGTGTTCCAGCCATTGTCGAATTGTATGCTTTGCAACCTCTTCTTCAATTATATATTCTAATTCTTCTCTTTGTAACAGTTCTTCCAGTTGAAGATTTTTCCGAATGTCCACACTCCGGTAGGTAACATACTGAAATTTTAGAATATGAAAAAAAAGCTTGGCTCTAGTAGTTTATTTTGGTCGTTAAAATTTTTTCCGCTGTAAACCTTTTTTAGATTTATAGTATTTTTCAGCCTATTATCTTACAAAAGCAGTACCCGAGGCGTCCCCGGCTGGCGCGCCTCCCGCGCGTCTCTGTCGCTCCGCGCTTCCTTTCTGATTTCCTTTTCACGTCAATCTATATTTAATTTTCTTGCGTTTCAAAAATCTCTCTTACGTGAAAGGCGAGATATATGATTGAGGGACACTTCGGGTACTGCCCTTGTAAGATTAAAATCTGGAAATGAATATGAATCTGAAAAATTCTAAGAACCAAACACACAAAGGTTAAAGCTGGATCAACATACTTTAGGACATCATGAAACGATACATCATCTCCATTATGAAGTCTTTCCATTTCATGACACATATGCTTGAATAGAAGTCCATCTGATTCATCAGGTACTTCAAGTCTTCCTCTTAACAATCTCAAAAGAAATTTTACTCTTCTAACCGGAATCGATCGTTTCTGTTCGACATCGACCATATTCCAAATTAATTGGAAGTTTCGAATATCTGCATAAGAGAGTAGTTGATCTTCGACAGACGAATAAAATAGAGAGAAATTCTCC</canonical>
            <polymorphic>CGACGCCTTCTTTTTTCCACTTCCTCTTTCTCCTTGTAATGATTCTTCGTCAGGAGATGCTTCTGTTAAAAACACTCCTTTTGTCAATACATCTTGCTGTGGGAAGGCAAATGTTGATCCAATTGAACTCATTTTCCCAAGAGTCTGAAACTCATTCAAAATTTTAGACATGTTCGGTTTTGATTGTTGTTCCTTACATTATTTTGTTTCGCTTTGATATTTTTAAGACAGTGTTCCAGCCATTGTCGAATTGTATGCTTTGCAACCTCTTCTTCAATTATATATTCTAATTCTTCTCTTTGTAACAGTTCTTCCAGTTGAAGATTTTTCCGAATGTCCACACTCCGGTAGGTAACATACTGAAATTTTAGAATATGAAAAAAAAGCTTGGCTCTAGTAGTTTATTTTGGTCGTTAAAATTTTTTCCGCTGTAAACCTTTTTTAGATTTATAGTATTTTTCAGCCTATTATCTTACAAAAGCAGTACCCGAGGCGTCCCYGGCTGGCGCGCCTCCCGCGCGTCTCTGTCGCTCCGCGCTTCCTTTCTGATTTCCTTTTCACGTCAATCTATATTTAATTTTCTTGCGTTTCAAAAATCTCTCTTACGTGAAAGGCGAGATATATGATTGAGGGACACTTCGGGTACTGCCCTTGTAAGATTAAAATCTGGAAATGAATATGAATCTGAAAAATTCTAAGAACCAAACACACAAAGGTTAAAGCTGGATCAACATACTTTAGGACATCATGAAACGATACATCATCTCCATTATGAAGTCTTTCCATTTCATGACACATATGCTTGAATAGAAGTCCATCTGATTCATCAGGTACTTCAAGTCTTCCTCTTAACAATCTCAAAAGAAATTTTACTCTTCTAACCGGAATCGATCGTTTCTGTTCGACATCGACCATATTCCAAATTAATTGGAAGTTTCGAATATCTGCATAAGAGAGTAGTTGATCTTCGACAGACGAATAAAATAGAGAGAAATTCTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>383 345 154 118</canonical_bands>
                <polymorphic_bands>537 345 118</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGCTTGGCTCTAGTAGTTT</pcr_primer_p1>
		<pcr_primer_p2>AATCATATATCTCGCCTTTCAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGCTTGGCTCTAGTAGTTTATTTTGGTCGTTAAAATTTTTTCCGCTGTAAACCTTTTTTAGATTTATAGTATTTTTCAGCCTATTATCTTACAAAAGCAGTACCCGAGGCGTCCCCGGCTGGCGCGCCTCCCGCGCGTCTCTGTCGCTCCGCGCTTCCTTTCTGATTTCCTTTTCACGTCAATCTATATTTAATTTTCTTGCGTTTCAAAAATCTCTCTTACGTGAAAGGCGAGATATATGATT</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGCTTGGCTCTAGTAGTTTATTTTGGTCGTTAAAATTTTTTCCGCTGTAAACCTTTTTTAGATTTATAGTATTTTTCAGCCTATTATCTTACAAAAGCAGTACCCGAGGCGTCCCYGGCTGGCGCGCCTCCCGCGCGTCTCTGTCGCTCCGCGCTTCCTTTCTGATTTCCTTTTCACGTCAATCTATATTTAATTTTCTTGCGTTTCAAAAATCTCTCTTACGTGAAAGGCGAGATATATGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3361</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>173051</contig_pos>
        <strand>+</strand>
        <context>GTGTTCCATG[C/T]CCGACAACCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTTATTTACAAGTCGTTGAAGGTTTCGCTAATTCAACCGTGTTCCATG</left_flank>
        <right_flank>CCGACAACCATACAATTGTTTAGCAGTTTCTCGATATCTTGAAGACATTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGTAACCTAGCTAAATTGGCTCAAAGTTAAGAGTTAGGGCTAAGGCTTCCATTTCGGTCGGTCGAAAATCGCCGACCGATAGCCGACCGATTTTGTGCCTTTGCGCATCGAAACACGATTTTTTGCGTACGAAATACTTTATTTTACGACAAACAAGGCACTTAGTGAGTAATTTGTCGTAAAATACAATGCAGCGTATGCAAAAACGTTGACACGCAAATGCACGAAAACGACCGGTTGTCGGTCGGCGGGGTCGGTGGTCGGTGGGTCAGCTAAATTTCCCGACCGAATGGAAGCCTTATTAGGGGCCCTCCTACCGCAAGTTTCCGCAAGTTTCACCTAAAACTGACATTTCTATTTTTGATGATCTGAATGTATGAACAGTTTTTTCCGAGATTTGAAACTTGCATGATTCCCAGAAAACAACAAAAAAAACCAATAGAAACTGATTTATTTACAAGTCGTTGAAGGTTTCGCTAATTCAACCGTGTTCCATGCCCGACAACCATACAATTGTTTAGCAGTTTCTCGATATCTTGAAGACATTGAAAAGTTCAAAAAACAATGAGAAATCGAGTTCAGACAAAATAAAATAGTTGTGAATACTCCTCCTTTGTCTATCAAAACCCATAAATATTGATTTTCCGGGGTTAGGAGAATTACAAAGTCCAGGATACCATATGGTGCACAACAGATAAAGTAGAATATTGTCATGATTAAAATCATTTTTGCCGCGCGGATTCTGAAAATTTAAAGAATTATTTTGAATTAAAATTTCAAAAAACTGGAGTGTGTCTCAAAATGATGTTTTTTTTCAAATAAATAGCCCTTCTATTATAGGTGCTCTTCAATTAGAATGATTCTTCTAATACAGGTTCTACGGTATCCAATATTCGAATTTGAACAGTTTTTACGTTTAGAACTATTTTAAATTTTATTCATTATGAACGAAACTTTGCGTAGGTGGTGGCCAGTGTGTCCTTTTGACACGACTTCGA</canonical>
            <polymorphic>CTAGTAACCTAGCTAAATTGGCTCAAAGTTAAGAGTTAGGGCTAAGGCTTCCATTTCGGTCGGTCGAAAATCGCCGACCGATAGCCGACCGATTTTGTGCCTTTGCGCATCGAAACACGATTTTTTGCGTACGAAATACTTTATTTTACGACAAACAAGGCACTTAGTGAGTAATTTGTCGTAAAATACAATGCAGCGTATGCAAAAACGTTGACACGCAAATGCACGAAAACGACCGGTTGTCGGTCGGCGGGGTCGGTGGTCGGTGGGTCAGCTAAATTTCCCGACCGAATGGAAGCCTTATTAGGGGCCCTCCTACCGCAAGTTTCCGCAAGTTTCACCTAAAACTGACATTTCTATTTTTGATGATCTGAATGTATGAACAGTTTTTTCCGAGATTTGAAACTTGCATGATTCCCAGAAAACAACAAAAAAAACCAATAGAAACTGATTTATTTACAAGTCGTTGAAGGTTTCGCTAATTCAACCGTGTTCCATGYCCGACAACCATACAATTGTTTAGCAGTTTCTCGATATCTTGAAGACATTGAAAAGTTCAAAAAACAATGAGAAATCGAGTTCAGACAAAATAAAATAGTTGTGAATACTCCTCCTTTGTCTATCAAAACCCATAAATATTGATTTTCCGGGGTTAGGAGAATTACAAAGTCCAGGATACCATATGGTGCACAACAGATAAAGTAGAATATTGTCATGATTAAAATCATTTTTGCCGCGCGGATTCTGAAAATTTAAAGAATTATTTTGAATTAAAATTTCAAAAAACTGGAGTGTGTCTCAAAATGATGTTTTTTTTCAAATAAATAGCCCTTCTATTATAGGTGCTCTTCAATTAGAATGATTCTTCTAATACAGGTTCTACGGTATCCAATATTCGAATTTGAACAGTTTTTACGTTTAGAACTATTTTAAATTTTATTCATTATGAACGAAACTTTGCGTAGGTGGTGGCCAGTGTGTCCTTTTGACACGACTTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGTTTCACCTAAAACTGACAT</pcr_primer_p1>
		<pcr_primer_p2>AACTCGATTTCTCATTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAGTTTCACCTAAAACTGACATTTCTATTTTTGATGATCTGAATGTATGAACAGTTTTTTCCGAGATTTGAAACTTGCATGATTCCCAGAAAACAACAAAAAAAACCAATAGAAACTGATTTATTTACAAGTCGTTGAAGGTTTCGCTAATTCAACCGTGTTCCATGCCCGACAACCATACAATTGTTTAGCAGTTTCTCGATATCTTGAAGACATTGAAAAGTTCAAAAAACAATGAGAAATCGAGTT</canonical_amplicon>
		<polymorphic_amplicon>CAAGTTTCACCTAAAACTGACATTTCTATTTTTGATGATCTGAATGTATGAACAGTTTTTTCCGAGATTTGAAACTTGCATGATTCCCAGAAAACAACAAAAAAAACCAATAGAAACTGATTTATTTACAAGTCGTTGAAGGTTTCGCTAATTCAACCGTGTTCCATGYCCGACAACCATACAATTGTTTAGCAGTTTCTCGATATCTTGAAGACATTGAAAAGTTCAAAAAACAATGAGAAATCGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3363</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>188076</contig_pos>
        <strand></strand>
        <context>CGGAGAAAAC[A/G]GCCCGCATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCACACACTCTTTCAATTTCTCTATTTCTTTTTTTTTCTCGGAGAAAAC</left_flank>
        <right_flank>GCCCGCATAAAAGCCTGGTCATTTCCTCATATTTCTCAGTTTTTAAAGCA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATATTCTCAGCTTCTGAAAACAAGAAAACAACAGTATGAGATCTCATTTCATTCAATTGACAAGTATCGAGAGGTAAAATCTGCTTTTCAGAAATTCCGCGGTTCTTAAATTTTCAGATACTTAAATTTTTCGAATTCAAAATTTCCAGATTCCTAGCTTTTCCGATTTTGAAACTCTGAGATTCTGAGTTTCCAAGACTTTGACAGCCTGTACTCTGTACTGTACTCTGTCTGTAAATTCGTATGTCCCATTTCTGATGTATTCAATCCCACCTATTTTTCCGAGAGGTTTCGGATAAACATTCCGAATTTCGTAACATTGTTTTGACCACTTATCATTCTTCGTTTGATGACTGGTCATTCGAGCTTTTTTCTGCCACGTCATCATCTTTTTTCTCTAGGTCTCCTCTCTTGTCATACAGTCTTTTTTTTTTCGATGGACGTCCTCTCCACACACTCTTTCAATTTCTCTATTTCTTTTTTTTTCTCGGAGAAAACAGCCCGCATAAAAGCCTGGTCATTTCCTCATATTTCTCAGTTTTTAAAGCAGAAAATTGTTCCTCGAAGTTTATTTTGTTTCTGATCATCTTTTCTTTCTTTTTTTATGATTTTAGCTGATAGACATCTTGATATACAGACATTCGGATAGATCCTCTCTCTCACTCTCTCCGTACTGAAAGACATCTGGATATACAGACACTCGGGACAGCCTCTCGCACTTTCTCTCTCTCACTCGCCTTCTCCAAGTCACCGTTACTCACATACTGTTAGTTACAGTACGAGCACAACCGAACTTGAAGCCTTCGCTTCCGACGTCGCCGCTACCACGAACCCAATCGTGATGATCGAGATGGTCCCGGTCAACAAGAAATATCTCCCAAGCAAGCACCAAGATCTTCTTCTGAAATCCTGAAATTCTGACATTCTGAAAGGTTCAGATTCTGCTTTTCAAATATTCCGTGGTTCTTAAATTTTCAGATACTTACATTTTCCGATATT</canonical>
            <polymorphic>GATATTCTCAGCTTCTGAAAACAAGAAAACAACAGTATGAGATCTCATTTCATTCAATTGACAAGTATCGAGAGGTAAAATCTGCTTTTCAGAAATTCCGCGGTTCTTAAATTTTCAGATACTTAAATTTTTCGAATTCAAAATTTCCAGATTCCTAGCTTTTCCGATTTTGAAACTCTGAGATTCTGAGTTTCCAAGACTTTGACAGCCTGTACTCTGTACTGTACTCTGTCTGTAAATTCGTATGTCCCATTTCTGATGTATTCAATCCCACCTATTTTTCCGAGAGGTTTCGGATAAACATTCCGAATTTCGTAACATTGTTTTGACCACTTATCATTCTTCGTTTGATGACTGGTCATTCGAGCTTTTTTCTGCCACGTCATCATCTTTTTTCTCTAGGTCTCCTCTCTTGTCATACAGTCTTTTTTTTTTCGATGGACGTCCTCTCCACACACTCTTTCAATTTCTCTATTTCTTTTTTTTTCTCGGAGAAAACRGCCCGCATAAAAGCCTGGTCATTTCCTCATATTTCTCAGTTTTTAAAGCAGAAAATTGTTCCTCGAAGTTTATTTTGTTTCTGATCATCTTTTCTTTCTTTTTTTATGATTTTAGCTGATAGACATCTTGATATACAGACATTCGGATAGATCCTCTCTCTCACTCTCTCCGTACTGAAAGACATCTGGATATACAGACACTCGGGACAGCCTCTCGCACTTTCTCTCTCTCACTCGCCTTCTCCAAGTCACCGTTACTCACATACTGTTAGTTACAGTACGAGCACAACCGAACTTGAAGCCTTCGCTTCCGACGTCGCCGCTACCACGAACCCAATCGTGATGATCGAGATGGTCCCGGTCAACAAGAAATATCTCCCAAGCAAGCACCAAGATCTTCTTCTGAAATCCTGAAATTCTGACATTCTGAAAGGTTCAGATTCTGCTTTTCAAATATTCCGTGGTTCTTAAATTTTCAGATACTTACATTTTCCGATATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>199 159 147 134 102 95 91 50 12 11</canonical_bands>
                <polymorphic_bands>199 159 147 146 102 95 91 50 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTATCATTCTTCGTTTGATGA</pcr_primer_p1>
		<pcr_primer_p2>AAACAAAATAAACTTCGAGGAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTTATCATTCTTCGTTTGATGACTGGTCATTCGAGCTTTTTTCTGCCACGTCATCATCTTTTTTCTCTAGGTCTCCTCTCTTGTCATACAGTCTTTTTTTTTTCGATGGACGTCCTCTCCACACACTCTTTCAATTTCTCTATTTCTTTTTTTTTCTCGGAGAAAACAGCCCGCATAAAAGCCTGGTCATTTCCTCATATTTCTCAGTTTTTAAAGCAGAAAATTGTTCCTCGAAGTTTATTTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>ACTTATCATTCTTCGTTTGATGACTGGTCATTCGAGCTTTTTTCTGCCACGTCATCATCTTTTTTCTCTAGGTCTCCTCTCTTGTCATACAGTCTTTTTTTTTTCGATGGACGTCCTCTCCACACACTCTTTCAATTTCTCTATTTCTTTTTTTTTCTCGGAGAAAACRGCCCGCATAAAAGCCTGGTCATTTCCTCATATTTCTCAGTTTTTAAAGCAGAAAATTGTTCCTCGAAGTTTATTTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3364</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>188360</contig_pos>
        <strand>+</strand>
        <context>TACAGTACGA[A/G]CACAACCGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCGCCTTCTCCAAGTCACCGTTACTCACATACTGTTAGTTACAGTACGA</left_flank>
        <right_flank>CACAACCGAACTTGAAGCCTTCGCTTCCGACGTCGCCGCTACCACGAACC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAGGTTTCGGATAAACATTCCGAATTTCGTAACATTGTTTTGACCACTTATCATTCTTCGTTTGATGACTGGTCATTCGAGCTTTTTTCTGCCACGTCATCATCTTTTTTCTCTAGGTCTCCTCTCTTGTCATACAGTCTTTTTTTTTTCGATGGACGTCCTCTCCACACACTCTTTCAATTTCTCTATTTCTTTTTTTTTCTCGGAGAAAACAGCCCGCATAAAAGCCTGGTCATTTCCTCATATTTCTCAGTTTTTAAAGCAGAAAATTGTTCCTCGAAGTTTATTTTGTTTCTGATCATCTTTTCTTTCTTTTTTTATGATTTTAGCTGATAGACATCTTGATATACAGACATTCGGATAGATCCTCTCTCTCACTCTCTCCGTACTGAAAGACATCTGGATATACAGACACTCGGGACAGCCTCTCGCACTTTCTCTCTCTCACTCGCCTTCTCCAAGTCACCGTTACTCACATACTGTTAGTTACAGTACGAGCACAACCGAACTTGAAGCCTTCGCTTCCGACGTCGCCGCTACCACGAACCCAATCGTGATGATCGAGATGGTCCCGGTCAACAAGAAATATCTCCCAAGCAAGCACCAAGATCTTCTTCTGAAATCCTGAAATTCTGACATTCTGAAAGGTTCAGATTCTGCTTTTCAAATATTCCGTGGTTCTTAAATTTTCAGATACTTACATTTTCCGATATTAAAATTTCCAGATTCCTAGTTTTTCCTATTCTGAAACTCTGAGATTCTGAGTTCCCAACACTTCGACAGCCTGTATAACTCTGTCTGTAAATTCGTATGTCCCATTTCTGATGTATCCAATCCCACCTATTTTTTTGAGACGTTTCGGAAAAACATTCCGAATTTCGTAACATTGTTTTGACGACTTATCATCTCACAGTCGGTTTGATGATTGATTTGATCATTCGAGCTTTTTCTGCCACGTCATCATCTTTTTTCTTTTTTCTCTAGGTCTCCTCTCTTGT</canonical>
            <polymorphic>GAGAGGTTTCGGATAAACATTCCGAATTTCGTAACATTGTTTTGACCACTTATCATTCTTCGTTTGATGACTGGTCATTCGAGCTTTTTTCTGCCACGTCATCATCTTTTTTCTCTAGGTCTCCTCTCTTGTCATACAGTCTTTTTTTTTTCGATGGACGTCCTCTCCACACACTCTTTCAATTTCTCTATTTCTTTTTTTTTCTCGGAGAAAACAGCCCGCATAAAAGCCTGGTCATTTCCTCATATTTCTCAGTTTTTAAAGCAGAAAATTGTTCCTCGAAGTTTATTTTGTTTCTGATCATCTTTTCTTTCTTTTTTTATGATTTTAGCTGATAGACATCTTGATATACAGACATTCGGATAGATCCTCTCTCTCACTCTCTCCGTACTGAAAGACATCTGGATATACAGACACTCGGGACAGCCTCTCGCACTTTCTCTCTCTCACTCGCCTTCTCCAAGTCACCGTTACTCACATACTGTTAGTTACAGTACGARCACAACCGAACTTGAAGCCTTCGCTTCCGACGTCGCCGCTACCACGAACCCAATCGTGATGATCGAGATGGTCCCGGTCAACAAGAAATATCTCCCAAGCAAGCACCAAGATCTTCTTCTGAAATCCTGAAATTCTGACATTCTGAAAGGTTCAGATTCTGCTTTTCAAATATTCCGTGGTTCTTAAATTTTCAGATACTTACATTTTCCGATATTAAAATTTCCAGATTCCTAGTTTTTCCTATTCTGAAACTCTGAGATTCTGAGTTCCCAACACTTCGACAGCCTGTATAACTCTGTCTGTAAATTCGTATGTCCCATTTCTGATGTATCCAATCCCACCTATTTTTTTGAGACGTTTCGGAAAAACATTCCGAATTTCGTAACATTGTTTTGACGACTTATCATCTCACAGTCGGTTTGATGATTGATTTGATCATTCGAGCTTTTTCTGCCACGTCATCATCTTTTTTCTTTTTTCTCTAGGTCTCCTCTCTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCCGTACTGAAAGACATCTG</pcr_primer_p1>
		<pcr_primer_p2>ATTTCAGGATTTCAGAAGAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCCGTACTGAAAGACATCTGGATATACAGACACTCGGGACAGCCTCTCGCACTTTCTCTCTCTCACTCGCCTTCTCCAAGTCACCGTTACTCACATACTGTTAGTTACAGTACGAGCACAACCGAACTTGAAGCCTTCGCTTCCGACGTCGCCGCTACCACGAACCCAATCGTGATGATCGAGATGGTCCCGGTCAACAAGAAATATCTCCCAAGCAAGCACCAAGATCTTCTTCTGAAATCCTGAAAT</canonical_amplicon>
		<polymorphic_amplicon>CTCCGTACTGAAAGACATCTGGATATACAGACACTCGGGACAGCCTCTCGCACTTTCTCTCTCTCACTCGCCTTCTCCAAGTCACCGTTACTCACATACTGTTAGTTACAGTACGARCACAACCGAACTTGAAGCCTTCGCTTCCGACGTCGCCGCTACCACGAACCCAATCGTGATGATCGAGATGGTCCCGGTCAACAAGAAATATCTCCCAAGCAAGCACCAAGATCTTCTTCTGAAATCCTGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3365</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>190476</contig_pos>
        <strand>+</strand>
        <context>TCAAAAACAC[A/T]AGCGACTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGCCAAATTCAAAGCCCTTTTGCCTACGCACCCGAAGGATCAAAAACAC</left_flank>
        <right_flank>AGCGACTTCAGAGAATCATAGAGGAGTTTCATTCGTCAGGAAAAAACGTT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGCCTGGGTGCTCTCCTCACGCAGGTAAAGGAGTTCATGAACTTCCCGGGAAGTCTCGAGAAGTTTGAAACTGAGCTGTCCGCTCTTTATCTGGTGAGAAATGGGAAATTGTAGCTTACAATTAGTTTATACTCTCAGATGACGCCCAATATCCATTCAAGTCTCACCAATCAGAAATACATCTATAAATCCCAGCTTCTTGCGATCCTTCAGAAAATCGGTGAGGTTCCGATAATCCAGTTGTTGCCCAGAGAAGACTCCAAGTACTATGTCCTTCATTCGATCATAGCCATCTACCTGAGAACCAAAGAAAGCCAAATGAAGGATCCATTTGAGTTGATGACCTATGACGACGATCAGCTCGCGCACTTGGAAGCTATCATCAGCGTCCAGACTTTGACGTTCCAGGGAGAAGATTTGGATCCGTCGACCAGCTTGGAAAACATCATCGCCAAATTCAAAGCCCTTTTGCCTACGCACCCGAAGGATCAAAAACACAAGCGACTTCAGAGAATCATAGAGGAGTTTCATTCGTCAGGAAAAAACGTTATTGTCTATCAGAACCTGCTGTTTTGGACCACTATCCTTATCACCGAGTTCGACCGTTTTTTGGCTGCTCTTCCAGCTTATCAAGGCCCTACTCTTGTCAGAGTCTTCCATGACGACTTTGCCGGAAAATTCGTTTTGGAAAGGGAACTACTCGGGCTGGGAAATCCTGAAACAGTCGAAATCGAGACATTGAGAACTGTGGACTTCAAGAAGATTCGTGAATGGCAGAAAGAGAACAACCTTCCAGTTTCGCCAATGGGACCCGACCCGTATATGATGGACCAATATGAGGTAGGAAGAACGACATCTAGAAATTTAGAAAAAAAAATACAATTTTTCAGTTTGTCATAATGAGGATCCCAAGAACCTTCTTCCGCTCAATCCCGATCCCAGCCTGGTCCAAAAAGTATTTCCACCACGTGACTGAAGTTTTGATTGAGATACTTAGAG</canonical>
            <polymorphic>AGGCCTGGGTGCTCTCCTCACGCAGGTAAAGGAGTTCATGAACTTCCCGGGAAGTCTCGAGAAGTTTGAAACTGAGCTGTCCGCTCTTTATCTGGTGAGAAATGGGAAATTGTAGCTTACAATTAGTTTATACTCTCAGATGACGCCCAATATCCATTCAAGTCTCACCAATCAGAAATACATCTATAAATCCCAGCTTCTTGCGATCCTTCAGAAAATCGGTGAGGTTCCGATAATCCAGTTGTTGCCCAGAGAAGACTCCAAGTACTATGTCCTTCATTCGATCATAGCCATCTACCTGAGAACCAAAGAAAGCCAAATGAAGGATCCATTTGAGTTGATGACCTATGACGACGATCAGCTCGCGCACTTGGAAGCTATCATCAGCGTCCAGACTTTGACGTTCCAGGGAGAAGATTTGGATCCGTCGACCAGCTTGGAAAACATCATCGCCAAATTCAAAGCCCTTTTGCCTACGCACCCGAAGGATCAAAAACACWAGCGACTTCAGAGAATCATAGAGGAGTTTCATTCGTCAGGAAAAAACGTTATTGTCTATCAGAACCTGCTGTTTTGGACCACTATCCTTATCACCGAGTTCGACCGTTTTTTGGCTGCTCTTCCAGCTTATCAAGGCCCTACTCTTGTCAGAGTCTTCCATGACGACTTTGCCGGAAAATTCGTTTTGGAAAGGGAACTACTCGGGCTGGGAAATCCTGAAACAGTCGAAATCGAGACATTGAGAACTGTGGACTTCAAGAAGATTCGTGAATGGCAGAAAGAGAACAACCTTCCAGTTTCGCCAATGGGACCCGACCCGTATATGATGGACCAATATGAGGTAGGAAGAACGACATCTAGAAATTTAGAAAAAAAAATACAATTTTTCAGTTTGTCATAATGAGGATCCCAAGAACCTTCTTCCGCTCAATCCCGATCCCAGCCTGGTCCAAAAAGTATTTCCACCACGTGACTGAAGTTTTGATTGAGATACTTAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTTGATGACCTATGACGAC</pcr_primer_p1>
		<pcr_primer_p2>ATAAGGATAGTGGTCCAAAACA</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>GAGTTGATGACCTATGACGACGATCAGCTCGCGCACTTGGAAGCTATCATCAGCGTCCAGACTTTGACGTTCCAGGGAGAAGATTTGGATCCGTCGACCAGCTTGGAAAACATCATCGCCAAATTCAAAGCCCTTTTGCCTACGCACCCGAAGGATCAAAAACACAAGCGACTTCAGAGAATCATAGAGGAGTTTCATTCGTCAGGAAAAAACGTTATTGTCTATCAGAACCTGCTGTTTTGGACCACTATCCTTAT</canonical_amplicon>
		<polymorphic_amplicon>GAGTTGATGACCTATGACGACGATCAGCTCGCGCACTTGGAAGCTATCATCAGCGTCCAGACTTTGACGTTCCAGGGAGAAGATTTGGATCCGTCGACCAGCTTGGAAAACATCATCGCCAAATTCAAAGCCCTTTTGCCTACGCACCCGAAGGATCAAAAACACWAGCGACTTCAGAGAATCATAGAGGAGTTTCATTCGTCAGGAAAAAACGTTATTGTCTATCAGAACCTGCTGTTTTGGACCACTATCCTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3366</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>190463</contig_pos>
        <strand>+</strand>
        <context>CGCACCCGAA[G/T]GATCAAAAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGGAAAACATCATCGCCAAATTCAAAGCCCTTTTGCCTACGCACCCGAA</left_flank>
        <right_flank>GATCAAAAACACAAGCGACTTCAGAGAATCATAGAGGAGTTTCATTCGTC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCTTACTACGGAGGCCTGGGTGCTCTCCTCACGCAGGTAAAGGAGTTCATGAACTTCCCGGGAAGTCTCGAGAAGTTTGAAACTGAGCTGTCCGCTCTTTATCTGGTGAGAAATGGGAAATTGTAGCTTACAATTAGTTTATACTCTCAGATGACGCCCAATATCCATTCAAGTCTCACCAATCAGAAATACATCTATAAATCCCAGCTTCTTGCGATCCTTCAGAAAATCGGTGAGGTTCCGATAATCCAGTTGTTGCCCAGAGAAGACTCCAAGTACTATGTCCTTCATTCGATCATAGCCATCTACCTGAGAACCAAAGAAAGCCAAATGAAGGATCCATTTGAGTTGATGACCTATGACGACGATCAGCTCGCGCACTTGGAAGCTATCATCAGCGTCCAGACTTTGACGTTCCAGGGAGAAGATTTGGATCCGTCGACCAGCTTGGAAAACATCATCGCCAAATTCAAAGCCCTTTTGCCTACGCACCCGAAGGATCAAAAACACAAGCGACTTCAGAGAATCATAGAGGAGTTTCATTCGTCAGGAAAAAACGTTATTGTCTATCAGAACCTGCTGTTTTGGACCACTATCCTTATCACCGAGTTCGACCGTTTTTTGGCTGCTCTTCCAGCTTATCAAGGCCCTACTCTTGTCAGAGTCTTCCATGACGACTTTGCCGGAAAATTCGTTTTGGAAAGGGAACTACTCGGGCTGGGAAATCCTGAAACAGTCGAAATCGAGACATTGAGAACTGTGGACTTCAAGAAGATTCGTGAATGGCAGAAAGAGAACAACCTTCCAGTTTCGCCAATGGGACCCGACCCGTATATGATGGACCAATATGAGGTAGGAAGAACGACATCTAGAAATTTAGAAAAAAAAATACAATTTTTCAGTTTGTCATAATGAGGATCCCAAGAACCTTCTTCCGCTCAATCCCGATCCCAGCCTGGTCCAAAAAGTATTTCCACCACGTGACTGAAGTTTTGATT</canonical>
            <polymorphic>TGGCTTACTACGGAGGCCTGGGTGCTCTCCTCACGCAGGTAAAGGAGTTCATGAACTTCCCGGGAAGTCTCGAGAAGTTTGAAACTGAGCTGTCCGCTCTTTATCTGGTGAGAAATGGGAAATTGTAGCTTACAATTAGTTTATACTCTCAGATGACGCCCAATATCCATTCAAGTCTCACCAATCAGAAATACATCTATAAATCCCAGCTTCTTGCGATCCTTCAGAAAATCGGTGAGGTTCCGATAATCCAGTTGTTGCCCAGAGAAGACTCCAAGTACTATGTCCTTCATTCGATCATAGCCATCTACCTGAGAACCAAAGAAAGCCAAATGAAGGATCCATTTGAGTTGATGACCTATGACGACGATCAGCTCGCGCACTTGGAAGCTATCATCAGCGTCCAGACTTTGACGTTCCAGGGAGAAGATTTGGATCCGTCGACCAGCTTGGAAAACATCATCGCCAAATTCAAAGCCCTTTTGCCTACGCACCCGAAKGATCAAAAACACAAGCGACTTCAGAGAATCATAGAGGAGTTTCATTCGTCAGGAAAAAACGTTATTGTCTATCAGAACCTGCTGTTTTGGACCACTATCCTTATCACCGAGTTCGACCGTTTTTTGGCTGCTCTTCCAGCTTATCAAGGCCCTACTCTTGTCAGAGTCTTCCATGACGACTTTGCCGGAAAATTCGTTTTGGAAAGGGAACTACTCGGGCTGGGAAATCCTGAAACAGTCGAAATCGAGACATTGAGAACTGTGGACTTCAAGAAGATTCGTGAATGGCAGAAAGAGAACAACCTTCCAGTTTCGCCAATGGGACCCGACCCGTATATGATGGACCAATATGAGGTAGGAAGAACGACATCTAGAAATTTAGAAAAAAAAATACAATTTTTCAGTTTGTCATAATGAGGATCCCAAGAACCTTCTTCCGCTCAATCCCGATCCCAGCCTGGTCCAAAAAGTATTTCCACCACGTGACTGAAGTTTTGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTACCTGAGAACCAAAGAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTGACGAATGAAACTCCTCTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATCTACCTGAGAACCAAAGAAAGCCAAATGAAGGATCCATTTGAGTTGATGACCTATGACGACGATCAGCTCGCGCACTTGGAAGCTATCATCAGCGTCCAGACTTTGACGTTCCAGGGAGAAGATTTGGATCCGTCGACCAGCTTGGAAAACATCATCGCCAAATTCAAAGCCCTTTTGCCTACGCACCCGAAGGATCAAAAACACAAGCGACTTCAGAGAATCATAGAGGAGTTTCATTCGTCAG</canonical_amplicon>
		<polymorphic_amplicon>ATCTACCTGAGAACCAAAGAAAGCCAAATGAAGGATCCATTTGAGTTGATGACCTATGACGACGATCAGCTCGCGCACTTGGAAGCTATCATCAGCGTCCAGACTTTGACGTTCCAGGGAGAAGATTTGGATCCGTCGACCAGCTTGGAAAACATCATCGCCAAATTCAAAGCCCTTTTGCCTACGCACCCGAAKGATCAAAAACACAAGCGACTTCAGAGAATCATAGAGGAGTTTCATTCGTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3367</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>189985</contig_pos>
        <strand>+</strand>
        <context>GGAGGCCTGG[A/G]TGCTCTCCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGCTTTATCAACGCAGCCGACACAAGATTGGCTTACTACGGAGGCCTGG</left_flank>
        <right_flank>TGCTCTCCTCACGCAGGTAAAGGAGTTCATGAACTTCCCGGGAAGTCTCG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCTCAGAGTCTCAGAGTCTCAGAATCTTTCAGAATTACAGAATCTCAGATGATGAGAATCAGAAATTTGAAAATTTTGAGTTTTTTAAGTCTCAGAATCTCTGAATCTCAGAATCTCAGAATCTCAGAACCTCGGAATCTCAGAATCCAAGGATGTGAGAATCGGAGAGTCTAAGAATCTTGCAATCTTAGAATCTCAGAATCTCAGAATCTCCGGGTCTCAGAATCTCAGATTTTCAGAAAATCAGATTTCCATATCTCTCTCTCTCTCTTTATCTTACCTTCTCTAATCCCTTCTCTTTTACAGTATGAACACATCTGCTCTCGAAGCCTTCGCTTCCGAAGTCGCCGCTGCCACGAACCCTATAATGATGGTCGAGATGATCCCGATCATCAAGAAATATCTCCCAAGCAAGCACCAAGATCTCTGCAAAATTGTCTGCAACGATGGCTTTATCAACGCAGCCGACACAAGATTGGCTTACTACGGAGGCCTGGGTGCTCTCCTCACGCAGGTAAAGGAGTTCATGAACTTCCCGGGAAGTCTCGAGAAGTTTGAAACTGAGCTGTCCGCTCTTTATCTGGTGAGAAATGGGAAATTGTAGCTTACAATTAGTTTATACTCTCAGATGACGCCCAATATCCATTCAAGTCTCACCAATCAGAAATACATCTATAAATCCCAGCTTCTTGCGATCCTTCAGAAAATCGGTGAGGTTCCGATAATCCAGTTGTTGCCCAGAGAAGACTCCAAGTACTATGTCCTTCATTCGATCATAGCCATCTACCTGAGAACCAAAGAAAGCCAAATGAAGGATCCATTTGAGTTGATGACCTATGACGACGATCAGCTCGCGCACTTGGAAGCTATCATCAGCGTCCAGACTTTGACGTTCCAGGGAGAAGATTTGGATCCGTCGACCAGCTTGGAAAACATCATCGCCAAATTCAAAGCCCTTTTGCCTACGCACCCGAAGGATCAAAAACACAAGCGACTTC</canonical>
            <polymorphic>AATCTCAGAGTCTCAGAGTCTCAGAATCTTTCAGAATTACAGAATCTCAGATGATGAGAATCAGAAATTTGAAAATTTTGAGTTTTTTAAGTCTCAGAATCTCTGAATCTCAGAATCTCAGAATCTCAGAACCTCGGAATCTCAGAATCCAAGGATGTGAGAATCGGAGAGTCTAAGAATCTTGCAATCTTAGAATCTCAGAATCTCAGAATCTCCGGGTCTCAGAATCTCAGATTTTCAGAAAATCAGATTTCCATATCTCTCTCTCTCTCTTTATCTTACCTTCTCTAATCCCTTCTCTTTTACAGTATGAACACATCTGCTCTCGAAGCCTTCGCTTCCGAAGTCGCCGCTGCCACGAACCCTATAATGATGGTCGAGATGATCCCGATCATCAAGAAATATCTCCCAAGCAAGCACCAAGATCTCTGCAAAATTGTCTGCAACGATGGCTTTATCAACGCAGCCGACACAAGATTGGCTTACTACGGAGGCCTGGRTGCTCTCCTCACGCAGGTAAAGGAGTTCATGAACTTCCCGGGAAGTCTCGAGAAGTTTGAAACTGAGCTGTCCGCTCTTTATCTGGTGAGAAATGGGAAATTGTAGCTTACAATTAGTTTATACTCTCAGATGACGCCCAATATCCATTCAAGTCTCACCAATCAGAAATACATCTATAAATCCCAGCTTCTTGCGATCCTTCAGAAAATCGGTGAGGTTCCGATAATCCAGTTGTTGCCCAGAGAAGACTCCAAGTACTATGTCCTTCATTCGATCATAGCCATCTACCTGAGAACCAAAGAAAGCCAAATGAAGGATCCATTTGAGTTGATGACCTATGACGACGATCAGCTCGCGCACTTGGAAGCTATCATCAGCGTCCAGACTTTGACGTTCCAGGGAGAAGATTTGGATCCGTCGACCAGCTTGGAAAACATCATCGCCAAATTCAAAGCCCTTTTGCCTACGCACCCGAAGGATCAAAAACACAAGCGACTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>360 346 132 103 42 17</canonical_bands>
                <polymorphic_bands>388 360 132 103 17</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>159 157 145 111 77 70 61 57 53 42 30 18 11 9</canonical_bands>
                <polymorphic_bands>159 157 145 111 77 70 61 57 53 42 39 18 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGATCTCTGCAAAATTGTCTG</pcr_primer_p1>
		<pcr_primer_p2>GTATTTCTGATTGGTGAGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAGATCTCTGCAAAATTGTCTGCAACGATGGCTTTATCAACGCAGCCGACACAAGATTGGCTTACTACGGAGGCCTGGGTGCTCTCCTCACGCAGGTAAAGGAGTTCATGAACTTCCCGGGAAGTCTCGAGAAGTTTGAAACTGAGCTGTCCGCTCTTTATCTGGTGAGAAATGGGAAATTGTAGCTTACAATTAGTTTATACTCTCAGATGACGCCCAATATCCATTCAAGTCTCACCAATCAGAAATAC</canonical_amplicon>
		<polymorphic_amplicon>AAGATCTCTGCAAAATTGTCTGCAACGATGGCTTTATCAACGCAGCCGACACAAGATTGGCTTACTACGGAGGCCTGGRTGCTCTCCTCACGCAGGTAAAGGAGTTCATGAACTTCCCGGGAAGTCTCGAGAAGTTTGAAACTGAGCTGTCCGCTCTTTATCTGGTGAGAAATGGGAAATTGTAGCTTACAATTAGTTTATACTCTCAGATGACGCCCAATATCCATTCAAGTCTCACCAATCAGAAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3369</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>46206</contig_pos>
        <strand>+</strand>
        <context>TTGAGAAAAA[A/T]TTTTCGGCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAA</left_flank>
        <right_flank>TTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGAC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATATATTCGGTGGAAAACGAGATAGTGTTCGATGAACATCCAGTTCCACTTGATTCCATTCTTTATGATTTTTCAATTCTTCAAGTGATAATTCTGGTTGATCCTGGAAAGAACAAATTTTGAACTTTAGGAGCAAAACATAGAATTTTGAGCATTTTAGGTACAAAAATCCAAATTTTTACAAATTTACAAATTTTTTCAATGAAAAATGAGCCAAATTTTCGATTTTTAGGTCATTTTATCGATTATTTTAGAGCTATTTTCAAGTTTGGGTCAATTTTTTAACATGAACAATTAATCCAAAATTATAAGTTTTCGAATAAAAATGGCGAAAATTTGAACTTTATGAGACTTTTGACATATAATTTGAAGGGAAATATGGAAATTTTTATATTTTTTTAACTTCACAAAATCCGAACTTTTATCCATTTTCCCCCTTAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCCCATTTTTCGGGTCGAATTTCATAAATGTTCTGGATTTTTTGCTGTTTTCAGAGTAATTTTCATAACTTTTACAGTCAAATTTCGCAGATTTTTTAATCAAAATTTCGTGATTTCTTGTGAATTTTTTCAATTTTTTTTCTGGATTGATTTTTATGAATTTTCAACTTTTTTACCTCAAAAATCGGCGTTTCCTCGTCAAAATCCGACTGCGCCGACTCGAAATCCGAATCGTAGGACGATGAGACGTCGTCTAGAAGTTTCAAAATATCAGTTTTTTGAAATTTGTTACTTTTTACTTACCCAAAT</canonical>
            <polymorphic>CGATATATTCGGTGGAAAACGAGATAGTGTTCGATGAACATCCAGTTCCACTTGATTCCATTCTTTATGATTTTTCAATTCTTCAAGTGATAATTCTGGTTGATCCTGGAAAGAACAAATTTTGAACTTTAGGAGCAAAACATAGAATTTTGAGCATTTTAGGTACAAAAATCCAAATTTTTACAAATTTACAAATTTTTTCAATGAAAAATGAGCCAAATTTTCGATTTTTAGGTCATTTTATCGATTATTTTAGAGCTATTTTCAAGTTTGGGTCAATTTTTTAACATGAACAATTAATCCAAAATTATAAGTTTTCGAATAAAAATGGCGAAAATTTGAACTTTATGAGACTTTTGACATATAATTTGAAGGGAAATATGGAAATTTTTATATTTTTTTAACTTCACAAAATCCGAACTTTTATCCATTTTCCCCCTTAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAAWTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCCCATTTTTCGGGTCGAATTTCATAAATGTTCTGGATTTTTTGCTGTTTTCAGAGTAATTTTCATAACTTTTACAGTCAAATTTCGCAGATTTTTTAATCAAAATTTCGTGATTTCTTGTGAATTTTTTCAATTTTTTTTCTGGATTGATTTTTATGAATTTTCAACTTTTTTACCTCAAAAATCGGCGTTTCCTCGTCAAAATCCGACTGCGCCGACTCGAAATCCGAATCGTAGGACGATGAGACGTCGTCTAGAAGTTTCAAAATATCAGTTTTTTGAAATTTGTTACTTTTTACTTACCCAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>124 117 117 112 74 71 63 50 43 36 30 28 27 25 23 19 15 10 8 8</canonical_bands>
                <polymorphic_bands>127 124 117 117 74 71 63 50 43 36 30 28 27 25 23 19 10 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>124 89 76 74 60 59 43 40 30 30 30 28 27 27 26 25 23 23 23 20 19 17 15 15 11 11 10 9 8 8</canonical_bands>
                <polymorphic_bands>124 89 76 74 60 59 43 40 38 30 30 30 28 27 27 26 25 23 23 20 19 17 15 11 11 10 9 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAAACTTGCACAAAAATAAGC</pcr_primer_p1>
		<pcr_primer_p2>GGAAAAATGAAACTAAAAATCAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCC</canonical_amplicon>
		<polymorphic_amplicon>TAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAAWTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3370</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>46275</contig_pos>
        <strand></strand>
        <context>CAGATTTTCA[A/G]GTTTTCCAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCA</left_flank>
        <right_flank>GTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTCAATTCTTCAAGTGATAATTCTGGTTGATCCTGGAAAGAACAAATTTTGAACTTTAGGAGCAAAACATAGAATTTTGAGCATTTTAGGTACAAAAATCCAAATTTTTACAAATTTACAAATTTTTTCAATGAAAAATGAGCCAAATTTTCGATTTTTAGGTCATTTTATCGATTATTTTAGAGCTATTTTCAAGTTTGGGTCAATTTTTTAACATGAACAATTAATCCAAAATTATAAGTTTTCGAATAAAAATGGCGAAAATTTGAACTTTATGAGACTTTTGACATATAATTTGAAGGGAAATATGGAAATTTTTATATTTTTTTAACTTCACAAAATCCGAACTTTTATCCATTTTCCCCCTTAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCCCATTTTTCGGGTCGAATTTCATAAATGTTCTGGATTTTTTGCTGTTTTCAGAGTAATTTTCATAACTTTTACAGTCAAATTTCGCAGATTTTTTAATCAAAATTTCGTGATTTCTTGTGAATTTTTTCAATTTTTTTTCTGGATTGATTTTTATGAATTTTCAACTTTTTTACCTCAAAAATCGGCGTTTCCTCGTCAAAATCCGACTGCGCCGACTCGAAATCCGAATCGTAGGACGATGAGACGTCGTCTAGAAGTTTCAAAATATCAGTTTTTTGAAATTTGTTACTTTTTACTTACCCAAATCATCATTTTGCACCAAATTCGCCGATAAAACCGGCCAAATCGTTGCTCGAAACTCGTCGTCCACGAGGC</canonical>
            <polymorphic>ATTTTTCAATTCTTCAAGTGATAATTCTGGTTGATCCTGGAAAGAACAAATTTTGAACTTTAGGAGCAAAACATAGAATTTTGAGCATTTTAGGTACAAAAATCCAAATTTTTACAAATTTACAAATTTTTTCAATGAAAAATGAGCCAAATTTTCGATTTTTAGGTCATTTTATCGATTATTTTAGAGCTATTTTCAAGTTTGGGTCAATTTTTTAACATGAACAATTAATCCAAAATTATAAGTTTTCGAATAAAAATGGCGAAAATTTGAACTTTATGAGACTTTTGACATATAATTTGAAGGGAAATATGGAAATTTTTATATTTTTTTAACTTCACAAAATCCGAACTTTTATCCATTTTCCCCCTTAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCARGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCCCATTTTTCGGGTCGAATTTCATAAATGTTCTGGATTTTTTGCTGTTTTCAGAGTAATTTTCATAACTTTTACAGTCAAATTTCGCAGATTTTTTAATCAAAATTTCGTGATTTCTTGTGAATTTTTTCAATTTTTTTTCTGGATTGATTTTTATGAATTTTCAACTTTTTTACCTCAAAAATCGGCGTTTCCTCGTCAAAATCCGACTGCGCCGACTCGAAATCCGAATCGTAGGACGATGAGACGTCGTCTAGAAGTTTCAAAATATCAGTTTTTTGAAATTTGTTACTTTTTACTTACCCAAATCATCATTTTGCACCAAATTCGCCGATAAAACCGGCCAAATCGTTGCTCGAAACTCGTCGTCCACGAGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAAACTTGCACAAAAATAAGC</pcr_primer_p1>
		<pcr_primer_p2>GGAAAAATGAAACTAAAAATCAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCC</canonical_amplicon>
		<polymorphic_amplicon>TAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCARGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3371</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>46287</contig_pos>
        <strand></strand>
        <context>TTTTCCAGAT[G/A]RATTCTTCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGAT</left_flank>
        <right_flank>GATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAAGTGATAATTCTGGTTGATCCTGGAAAGAACAAATTTTGAACTTTAGGAGCAAAACATAGAATTTTGAGCATTTTAGGTACAAAAATCCAAATTTTTACAAATTTACAAATTTTTTCAATGAAAAATGAGCCAAATTTTCGATTTTTAGGTCATTTTATCGATTATTTTAGAGCTATTTTCAAGTTTGGGTCAATTTTTTAACATGAACAATTAATCCAAAATTATAAGTTTTCGAATAAAAATGGCGAAAATTTGAACTTTATGAGACTTTTGACATATAATTTGAAGGGAAATATGGAAATTTTTATATTTTTTTAACTTCACAAAATCCGAACTTTTATCCATTTTCCCCCTTAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCCCATTTTTCGGGTCGAATTTCATAAATGTTCTGGATTTTTTGCTGTTTTCAGAGTAATTTTCATAACTTTTACAGTCAAATTTCGCAGATTTTTTAATCAAAATTTCGTGATTTCTTGTGAATTTTTTCAATTTTTTTTCTGGATTGATTTTTATGAATTTTCAACTTTTTTACCTCAAAAATCGGCGTTTCCTCGTCAAAATCCGACTGCGCCGACTCGAAATCCGAATCGTAGGACGATGAGACGTCGTCTAGAAGTTTCAAAATATCAGTTTTTTGAAATTTGTTACTTTTTACTTACCCAAATCATCATTTTGCACCAAATTCGCCGATAAAACCGGCCAAATCGTTGCTCGAAACTCGTCGTCCACGAGGCCGCCGGAGCTGA</canonical>
            <polymorphic>TTCAAGTGATAATTCTGGTTGATCCTGGAAAGAACAAATTTTGAACTTTAGGAGCAAAACATAGAATTTTGAGCATTTTAGGTACAAAAATCCAAATTTTTACAAATTTACAAATTTTTTCAATGAAAAATGAGCCAAATTTTCGATTTTTAGGTCATTTTATCGATTATTTTAGAGCTATTTTCAAGTTTGGGTCAATTTTTTAACATGAACAATTAATCCAAAATTATAAGTTTTCGAATAAAAATGGCGAAAATTTGAACTTTATGAGACTTTTGACATATAATTTGAAGGGAAATATGGAAATTTTTATATTTTTTTAACTTCACAAAATCCGAACTTTTATCCATTTTCCCCCTTAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATRGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCCCATTTTTCGGGTCGAATTTCATAAATGTTCTGGATTTTTTGCTGTTTTCAGAGTAATTTTCATAACTTTTACAGTCAAATTTCGCAGATTTTTTAATCAAAATTTCGTGATTTCTTGTGAATTTTTTCAATTTTTTTTCTGGATTGATTTTTATGAATTTTCAACTTTTTTACCTCAAAAATCGGCGTTTCCTCGTCAAAATCCGACTGCGCCGACTCGAAATCCGAATCGTAGGACGATGAGACGTCGTCTAGAAGTTTCAAAATATCAGTTTTTTGAAATTTGTTACTTTTTACTTACCCAAATCATCATTTTGCACCAAATTCGCCGATAAAACCGGCCAAATCGTTGCTCGAAACTCGTCGTCCACGAGGCCGCCGGAGCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAAACTTGCACAAAAATAAGC</pcr_primer_p1>
		<pcr_primer_p2>GGAAAAATGAAACTAAAAATCAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCC</canonical_amplicon>
		<polymorphic_amplicon>TAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATRGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3372</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>46337</contig_pos>
        <strand></strand>
        <context>CGATTTTCAT[G/A]ATTTTRAAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCAT</left_flank>
        <right_flank>ATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGCAAAACATAGAATTTTGAGCATTTTAGGTACAAAAATCCAAATTTTTACAAATTTACAAATTTTTTCAATGAAAAATGAGCCAAATTTTCGATTTTTAGGTCATTTTATCGATTATTTTAGAGCTATTTTCAAGTTTGGGTCAATTTTTTAACATGAACAATTAATCCAAAATTATAAGTTTTCGAATAAAAATGGCGAAAATTTGAACTTTATGAGACTTTTGACATATAATTTGAAGGGAAATATGGAAATTTTTATATTTTTTTAACTTCACAAAATCCGAACTTTTATCCATTTTCCCCCTTAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCCCATTTTTCGGGTCGAATTTCATAAATGTTCTGGATTTTTTGCTGTTTTCAGAGTAATTTTCATAACTTTTACAGTCAAATTTCGCAGATTTTTTAATCAAAATTTCGTGATTTCTTGTGAATTTTTTCAATTTTTTTTCTGGATTGATTTTTATGAATTTTCAACTTTTTTACCTCAAAAATCGGCGTTTCCTCGTCAAAATCCGACTGCGCCGACTCGAAATCCGAATCGTAGGACGATGAGACGTCGTCTAGAAGTTTCAAAATATCAGTTTTTTGAAATTTGTTACTTTTTACTTACCCAAATCATCATTTTGCACCAAATTCGCCGATAAAACCGGCCAAATCGTTGCTCGAAACTCGTCGTCCACGAGGCCGCCGGAGCTGATCGCAAAATCACGAAGTTCGTCTGAAAATTTTGGGCGGGGATTTTGAATT</canonical>
            <polymorphic>GGAGCAAAACATAGAATTTTGAGCATTTTAGGTACAAAAATCCAAATTTTTACAAATTTACAAATTTTTTCAATGAAAAATGAGCCAAATTTTCGATTTTTAGGTCATTTTATCGATTATTTTAGAGCTATTTTCAAGTTTGGGTCAATTTTTTAACATGAACAATTAATCCAAAATTATAAGTTTTCGAATAAAAATGGCGAAAATTTGAACTTTATGAGACTTTTGACATATAATTTGAAGGGAAATATGGAAATTTTTATATTTTTTTAACTTCACAAAATCCGAACTTTTATCCATTTTCCCCCTTAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATRATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCCCATTTTTCGGGTCGAATTTCATAAATGTTCTGGATTTTTTGCTGTTTTCAGAGTAATTTTCATAACTTTTACAGTCAAATTTCGCAGATTTTTTAATCAAAATTTCGTGATTTCTTGTGAATTTTTTCAATTTTTTTTCTGGATTGATTTTTATGAATTTTCAACTTTTTTACCTCAAAAATCGGCGTTTCCTCGTCAAAATCCGACTGCGCCGACTCGAAATCCGAATCGTAGGACGATGAGACGTCGTCTAGAAGTTTCAAAATATCAGTTTTTTGAAATTTGTTACTTTTTACTTACCCAAATCATCATTTTGCACCAAATTCGCCGATAAAACCGGCCAAATCGTTGCTCGAAACTCGTCGTCCACGAGGCCGCCGGAGCTGATCGCAAAATCACGAAGTTCGTCTGAAAATTTTGGGCGGGGATTTTGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>504 350 146</canonical_bands>
                <polymorphic_bands>650 350</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 194 157 146</canonical_bands>
                <polymorphic_bands>649 194 157</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>351 146 112 93 76 53 53 43 40 33</canonical_bands>
                <polymorphic_bands>351 146 112 96 93 76 53 40 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAAACTTGCACAAAAATAAGC</pcr_primer_p1>
		<pcr_primer_p2>GGAAAAATGAAACTAAAAATCAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCC</canonical_amplicon>
		<polymorphic_amplicon>TAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATRATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3373</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>46370</contig_pos>
        <strand></strand>
        <context>ACTTTTCATT[G/A]GAATTTCTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATT</left_flank>
        <right_flank>GAATTTCTTGATTTTTAGTTTCATTTTTCCCATTTTTCGGGTCGAATTTC</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAAAATCCAAATTTTTACAAATTTACAAATTTTTTCAATGAAAAATGAGCCAAATTTTCGATTTTTAGGTCATTTTATCGATTATTTTAGAGCTATTTTCAAGTTTGGGTCAATTTTTTAACATGAACAATTAATCCAAAATTATAAGTTTTCGAATAAAAATGGCGAAAATTTGAACTTTATGAGACTTTTGACATATAATTTGAAGGGAAATATGGAAATTTTTATATTTTTTTAACTTCACAAAATCCGAACTTTTATCCATTTTCCCCCTTAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCCCATTTTTCGGGTCGAATTTCATAAATGTTCTGGATTTTTTGCTGTTTTCAGAGTAATTTTCATAACTTTTACAGTCAAATTTCGCAGATTTTTTAATCAAAATTTCGTGATTTCTTGTGAATTTTTTCAATTTTTTTTCTGGATTGATTTTTATGAATTTTCAACTTTTTTACCTCAAAAATCGGCGTTTCCTCGTCAAAATCCGACTGCGCCGACTCGAAATCCGAATCGTAGGACGATGAGACGTCGTCTAGAAGTTTCAAAATATCAGTTTTTTGAAATTTGTTACTTTTTACTTACCCAAATCATCATTTTGCACCAAATTCGCCGATAAAACCGGCCAAATCGTTGCTCGAAACTCGTCGTCCACGAGGCCGCCGGAGCTGATCGCAAAATCACGAAGTTCGTCTGAAAATTTTGGGCGGGGATTTTGAATTTTTGAAAATCTCTGAAACAATTTTATAAGAGAC</canonical>
            <polymorphic>ACAAAAATCCAAATTTTTACAAATTTACAAATTTTTTCAATGAAAAATGAGCCAAATTTTCGATTTTTAGGTCATTTTATCGATTATTTTAGAGCTATTTTCAAGTTTGGGTCAATTTTTTAACATGAACAATTAATCCAAAATTATAAGTTTTCGAATAAAAATGGCGAAAATTTGAACTTTATGAGACTTTTGACATATAATTTGAAGGGAAATATGGAAATTTTTATATTTTTTTAACTTCACAAAATCCGAACTTTTATCCATTTTCCCCCTTAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTRGAATTTCTTGATTTTTAGTTTCATTTTTCCCATTTTTCGGGTCGAATTTCATAAATGTTCTGGATTTTTTGCTGTTTTCAGAGTAATTTTCATAACTTTTACAGTCAAATTTCGCAGATTTTTTAATCAAAATTTCGTGATTTCTTGTGAATTTTTTCAATTTTTTTTCTGGATTGATTTTTATGAATTTTCAACTTTTTTACCTCAAAAATCGGCGTTTCCTCGTCAAAATCCGACTGCGCCGACTCGAAATCCGAATCGTAGGACGATGAGACGTCGTCTAGAAGTTTCAAAATATCAGTTTTTTGAAATTTGTTACTTTTTACTTACCCAAATCATCATTTTGCACCAAATTCGCCGATAAAACCGGCCAAATCGTTGCTCGAAACTCGTCGTCCACGAGGCCGCCGGAGCTGATCGCAAAATCACGAAGTTCGTCTGAAAATTTTGGGCGGGGATTTTGAATTTTTGAAAATCTCTGAAACAATTTTATAAGAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGACTGATTTTTCAGATTTTCA</pcr_primer_p1>
		<pcr_primer_p2>AATTCACAAGAAATCACGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>GGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCCCATTTTTCGGGTCGAATTTCATAAATGTTCTGGATTTTTTGCTGTTTTCAGAGTAATTTTCATAACTTTTACAGTCAAATTTCGCAGATTTTTTAATCAAAATTTCGTGATTTCTTGTGAATT</canonical_amplicon>
		<polymorphic_amplicon>GGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTRGAATTTCTTGATTTTTAGTTTCATTTTTCCCATTTTTCGGGTCGAATTTCATAAATGTTCTGGATTTTTTGCTGTTTTCAGAGTAATTTTCATAACTTTTACAGTCAAATTTCGCAGATTTTTTAATCAAAATTTCGTGATTTCTTGTGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3374</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>46452</contig_pos>
        <strand>+</strand>
        <context>CTGTTTTCAG[A/T]GTAATTTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTTCGGGTCGAATTTCATAAATGTTCTGGATTTTTTGCTGTTTTCAG</left_flank>
        <right_flank>GTAATTTTCATAACTTTTACAGTCAAATTTCGCAGATTTTTTAATCAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTATTTTAGAGCTATTTTCAAGTTTGGGTCAATTTTTTAACATGAACAATTAATCCAAAATTATAAGTTTTCGAATAAAAATGGCGAAAATTTGAACTTTATGAGACTTTTGACATATAATTTGAAGGGAAATATGGAAATTTTTATATTTTTTTAACTTCACAAAATCCGAACTTTTATCCATTTTCCCCCTTAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCCCATTTTTCGGGTCGAATTTCATAAATGTTCTGGATTTTTTGCTGTTTTCAGAGTAATTTTCATAACTTTTACAGTCAAATTTCGCAGATTTTTTAATCAAAATTTCGTGATTTCTTGTGAATTTTTTCAATTTTTTTTCTGGATTGATTTTTATGAATTTTCAACTTTTTTACCTCAAAAATCGGCGTTTCCTCGTCAAAATCCGACTGCGCCGACTCGAAATCCGAATCGTAGGACGATGAGACGTCGTCTAGAAGTTTCAAAATATCAGTTTTTTGAAATTTGTTACTTTTTACTTACCCAAATCATCATTTTGCACCAAATTCGCCGATAAAACCGGCCAAATCGTTGCTCGAAACTCGTCGTCCACGAGGCCGCCGGAGCTGATCGCAAAATCACGAAGTTCGTCTGAAAATTTTGGGCGGGGATTTTGAATTTTTGAAAATCTCTGAAACAATTTTATAAGAGACTCTTTCAGACTACTTTCAGGGTTAAATTTCATTGATTTTCTTAAATTTTCAGTTTTTTCTAACCTATATACAGGCTCAAATC</canonical>
            <polymorphic>ATTATTTTAGAGCTATTTTCAAGTTTGGGTCAATTTTTTAACATGAACAATTAATCCAAAATTATAAGTTTTCGAATAAAAATGGCGAAAATTTGAACTTTATGAGACTTTTGACATATAATTTGAAGGGAAATATGGAAATTTTTATATTTTTTTAACTTCACAAAATCCGAACTTTTATCCATTTTCCCCCTTAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCCCATTTTTCGGGTCGAATTTCATAAATGTTCTGGATTTTTTGCTGTTTTCAGWGTAATTTTCATAACTTTTACAGTCAAATTTCGCAGATTTTTTAATCAAAATTTCGTGATTTCTTGTGAATTTTTTCAATTTTTTTTCTGGATTGATTTTTATGAATTTTCAACTTTTTTACCTCAAAAATCGGCGTTTCCTCGTCAAAATCCGACTGCGCCGACTCGAAATCCGAATCGTAGGACGATGAGACGTCGTCTAGAAGTTTCAAAATATCAGTTTTTTGAAATTTGTTACTTTTTACTTACCCAAATCATCATTTTGCACCAAATTCGCCGATAAAACCGGCCAAATCGTTGCTCGAAACTCGTCGTCCACGAGGCCGCCGGAGCTGATCGCAAAATCACGAAGTTCGTCTGAAAATTTTGGGCGGGGATTTTGAATTTTTGAAAATCTCTGAAACAATTTTATAAGAGACTCTTTCAGACTACTTTCAGGGTTAAATTTCATTGATTTTCTTAAATTTTCAGTTTTTTCTAACCTATATACAGGCTCAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>185 171 154 154 143 75 40 30 27 21</canonical_bands>
                <polymorphic_bands>308 185 171 143 75 40 30 27 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTCATTTTTCCCATTTTTC</pcr_primer_p1>
		<pcr_primer_p2>GTCTCATCGTCCTACGATTC</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>GTTTCATTTTTCCCATTTTTCGGGTCGAATTTCATAAATGTTCTGGATTTTTTGCTGTTTTCAGAGTAATTTTCATAACTTTTACAGTCAAATTTCGCAGATTTTTTAATCAAAATTTCGTGATTTCTTGTGAATTTTTTCAATTTTTTTTCTGGATTGATTTTTATGAATTTTCAACTTTTTTACCTCAAAAATCGGCGTTTCCTCGTCAAAATCCGACTGCGCCGACTCGAAATCCGAATCGTAGGACGATGAGAC</canonical_amplicon>
		<polymorphic_amplicon>GTTTCATTTTTCCCATTTTTCGGGTCGAATTTCATAAATGTTCTGGATTTTTTGCTGTTTTCAGWGTAATTTTCATAACTTTTACAGTCAAATTTCGCAGATTTTTTAATCAAAATTTCGTGATTTCTTGTGAATTTTTTCAATTTTTTTTCTGGATTGATTTTTATGAATTTTCAACTTTTTTACCTCAAAAATCGGCGTTTCCTCGTCAAAATCCGACTGCGCCGACTCGAAATCCGAATCGTAGGACGATGAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3375</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>46475</contig_pos>
        <strand>+</strand>
        <context>ACTTTTACAG[C/T]CAAATTTCGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGTTCTGGATTTTTTGCTGTTTTCAGAGTAATTTTCATAACTTTTACAG</left_flank>
        <right_flank>CAAATTTCGCAGATTTTTTAATCAAAATTTCGTGATTTCTTGTGAATTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGGGTCAATTTTTTAACATGAACAATTAATCCAAAATTATAAGTTTTCGAATAAAAATGGCGAAAATTTGAACTTTATGAGACTTTTGACATATAATTTGAAGGGAAATATGGAAATTTTTATATTTTTTTAACTTCACAAAATCCGAACTTTTATCCATTTTCCCCCTTAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCCCATTTTTCGGGTCGAATTTCATAAATGTTCTGGATTTTTTGCTGTTTTCAGAGTAATTTTCATAACTTTTACAGTCAAATTTCGCAGATTTTTTAATCAAAATTTCGTGATTTCTTGTGAATTTTTTCAATTTTTTTTCTGGATTGATTTTTATGAATTTTCAACTTTTTTACCTCAAAAATCGGCGTTTCCTCGTCAAAATCCGACTGCGCCGACTCGAAATCCGAATCGTAGGACGATGAGACGTCGTCTAGAAGTTTCAAAATATCAGTTTTTTGAAATTTGTTACTTTTTACTTACCCAAATCATCATTTTGCACCAAATTCGCCGATAAAACCGGCCAAATCGTTGCTCGAAACTCGTCGTCCACGAGGCCGCCGGAGCTGATCGCAAAATCACGAAGTTCGTCTGAAAATTTTGGGCGGGGATTTTGAATTTTTGAAAATCTCTGAAACAATTTTATAAGAGACTCTTTCAGACTACTTTCAGGGTTAAATTTCATTGATTTTCTTAAATTTTCAGTTTTTTCTAACCTATATACAGGCTCAAATCCTCCTCTTTATGCTTTTTCAAAA</canonical>
            <polymorphic>TTTGGGTCAATTTTTTAACATGAACAATTAATCCAAAATTATAAGTTTTCGAATAAAAATGGCGAAAATTTGAACTTTATGAGACTTTTGACATATAATTTGAAGGGAAATATGGAAATTTTTATATTTTTTTAACTTCACAAAATCCGAACTTTTATCCATTTTCCCCCTTAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCCCATTTTTCGGGTCGAATTTCATAAATGTTCTGGATTTTTTGCTGTTTTCAGAGTAATTTTCATAACTTTTACAGYCAAATTTCGCAGATTTTTTAATCAAAATTTCGTGATTTCTTGTGAATTTTTTCAATTTTTTTTCTGGATTGATTTTTATGAATTTTCAACTTTTTTACCTCAAAAATCGGCGTTTCCTCGTCAAAATCCGACTGCGCCGACTCGAAATCCGAATCGTAGGACGATGAGACGTCGTCTAGAAGTTTCAAAATATCAGTTTTTTGAAATTTGTTACTTTTTACTTACCCAAATCATCATTTTGCACCAAATTCGCCGATAAAACCGGCCAAATCGTTGCTCGAAACTCGTCGTCCACGAGGCCGCCGGAGCTGATCGCAAAATCACGAAGTTCGTCTGAAAATTTTGGGCGGGGATTTTGAATTTTTGAAAATCTCTGAAACAATTTTATAAGAGACTCTTTCAGACTACTTTCAGGGTTAAATTTCATTGATTTTCTTAAATTTTCAGTTTTTTCTAACCTATATACAGGCTCAAATCCTCCTCTTTATGCTTTTTCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCATAAATGTTCTGGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGATATTTTGAAACTTCTAGACGAC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTTCATAAATGTTCTGGATTTTTTGCTGTTTTCAGAGTAATTTTCATAACTTTTACAGTCAAATTTCGCAGATTTTTTAATCAAAATTTCGTGATTTCTTGTGAATTTTTTCAATTTTTTTTCTGGATTGATTTTTATGAATTTTCAACTTTTTTACCTCAAAAATCGGCGTTTCCTCGTCAAAATCCGACTGCGCCGACTCGAAATCCGAATCGTAGGACGATGAGACGTCGTCTAGAAGTTTCAAAATATCA</canonical_amplicon>
		<polymorphic_amplicon>TTTCATAAATGTTCTGGATTTTTTGCTGTTTTCAGAGTAATTTTCATAACTTTTACAGYCAAATTTCGCAGATTTTTTAATCAAAATTTCGTGATTTCTTGTGAATTTTTTCAATTTTTTTTCTGGATTGATTTTTATGAATTTTCAACTTTTTTACCTCAAAAATCGGCGTTTCCTCGTCAAAATCCGACTGCGCCGACTCGAAATCCGAATCGTAGGACGATGAGACGTCGTCTAGAAGTTTCAAAATATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3376</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>46748</contig_pos>
        <strand>+</strand>
        <context>CGGCCAAATC[A/G]TTGCTCGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACCCAAATCATCATTTTGCACCAAATTCGCCGATAAAACCGGCCAAATC</left_flank>
        <right_flank>TTGCTCGAAACTCGTCGTCCACGAGGCCGCCGGAGCTGATCGCAAAATCA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCCCATTTTTCGGGTCGAATTTCATAAATGTTCTGGATTTTTTGCTGTTTTCAGAGTAATTTTCATAACTTTTACAGTCAAATTTCGCAGATTTTTTAATCAAAATTTCGTGATTTCTTGTGAATTTTTTCAATTTTTTTTCTGGATTGATTTTTATGAATTTTCAACTTTTTTACCTCAAAAATCGGCGTTTCCTCGTCAAAATCCGACTGCGCCGACTCGAAATCCGAATCGTAGGACGATGAGACGTCGTCTAGAAGTTTCAAAATATCAGTTTTTTGAAATTTGTTACTTTTTACTTACCCAAATCATCATTTTGCACCAAATTCGCCGATAAAACCGGCCAAATCGTTGCTCGAAACTCGTCGTCCACGAGGCCGCCGGAGCTGATCGCAAAATCACGAAGTTCGTCTGAAAATTTTGGGCGGGGATTTTGAATTTTTGAAAATCTCTGAAACAATTTTATAAGAGACTCTTTCAGACTACTTTCAGGGTTAAATTTCATTGATTTTCTTAAATTTTCAGTTTTTTCTAACCTATATACAGGCTCAAATCCTCCTCTTTATGCTTTTTCAAAAATCGATCGATCGCTTCTCTCTTGTTCCTCAACGCATTGAATTTCGCCTTTGCCAACGGACCTGGCTGAAAAATGATGCAAAAATTGTATTTTTCAGCTGAAAATTAGCCCTACTTTCACATAATTATCGCCCAAATCACTGCATGAAGCGGTCTGCCATTTCTCTCCGAGCACCTCTTTCAGCGGCGAATTCGGCTCCGAGAACGACGAGTGCATAGGTTATTTAGCTAGGAAGTCTAATTGATGATAAAATGACAAAAAAAATTGAGAAAAT</canonical>
            <polymorphic>TTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCCCATTTTTCGGGTCGAATTTCATAAATGTTCTGGATTTTTTGCTGTTTTCAGAGTAATTTTCATAACTTTTACAGTCAAATTTCGCAGATTTTTTAATCAAAATTTCGTGATTTCTTGTGAATTTTTTCAATTTTTTTTCTGGATTGATTTTTATGAATTTTCAACTTTTTTACCTCAAAAATCGGCGTTTCCTCGTCAAAATCCGACTGCGCCGACTCGAAATCCGAATCGTAGGACGATGAGACGTCGTCTAGAAGTTTCAAAATATCAGTTTTTTGAAATTTGTTACTTTTTACTTACCCAAATCATCATTTTGCACCAAATTCGCCGATAAAACCGGCCAAATCRTTGCTCGAAACTCGTCGTCCACGAGGCCGCCGGAGCTGATCGCAAAATCACGAAGTTCGTCTGAAAATTTTGGGCGGGGATTTTGAATTTTTGAAAATCTCTGAAACAATTTTATAAGAGACTCTTTCAGACTACTTTCAGGGTTAAATTTCATTGATTTTCTTAAATTTTCAGTTTTTTCTAACCTATATACAGGCTCAAATCCTCCTCTTTATGCTTTTTCAAAAATCGATCGATCGCTTCTCTCTTGTTCCTCAACGCATTGAATTTCGCCTTTGCCAACGGACCTGGCTGAAAAATGATGCAAAAATTGTATTTTTCAGCTGAAAATTAGCCCTACTTTCACATAATTATCGCCCAAATCACTGCATGAAGCGGTCTGCCATTTCTCTCCGAGCACCTCTTTCAGCGGCGAATTCGGCTCCGAGAACGACGAGTGCATAGGTTATTTAGCTAGGAAGTCTAATTGATGATAAAATGACAAAAAAAATTGAGAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGTCTAGAAGTTTCAAAATATCA</pcr_primer_p1>
		<pcr_primer_p2>TTTAACCCTGAAAGTAGTCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCGTCTAGAAGTTTCAAAATATCAGTTTTTTGAAATTTGTTACTTTTTACTTACCCAAATCATCATTTTGCACCAAATTCGCCGATAAAACCGGCCAAATCGTTGCTCGAAACTCGTCGTCCACGAGGCCGCCGGAGCTGATCGCAAAATCACGAAGTTCGTCTGAAAATTTTGGGCGGGGATTTTGAATTTTTGAAAATCTCTGAAACAATTTTATAAGAGACTCTTTCAGACTACTTTCAGGGTTAAA</canonical_amplicon>
		<polymorphic_amplicon>TCGTCTAGAAGTTTCAAAATATCAGTTTTTTGAAATTTGTTACTTTTTACTTACCCAAATCATCATTTTGCACCAAATTCGCCGATAAAACCGGCCAAATCRTTGCTCGAAACTCGTCGTCCACGAGGCCGCCGGAGCTGATCGCAAAATCACGAAGTTCGTCTGAAAATTTTGGGCGGGGATTTTGAATTTTTGAAAATCTCTGAAACAATTTTATAAGAGACTCTTTCAGACTACTTTCAGGGTTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3377</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>68060</contig_pos>
        <strand>+</strand>
        <context>GACGTTGGAA[A/G]ATATGGAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCGAAAATCGGGATGAATTCTTCGAAAAGTCGTTCAGAAGACGTTGGAA</left_flank>
        <right_flank>ATATGGAATCGGAGGAATCGGAGGAGGTGGTGGCGGCGGTGGAAGATGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTTTTTGAAAATTCAAATTCTCGAAAAAAAAACAAAAATTTTTGAATGTCTCAACAATTTTCGTTCAAATTTCTTGAAAAAAAAACTATTAAAATGTTGAAAATTCTCGAAATTTTTCTGAATTTTCGATTTCGAAAAGTTTTGAAAAATTCGGTTGAAAATCCTCAAAAATGTGATTTTTTCTTAATTCTCAAATTTTCAATTTTTTTTGTGAAATTCAATTTTTTCTCGCATTCCGATTTTAAGAATTTTTGAATTTTTTTGATTTTCTCATTTTTTGACCCAAAATTTAAATTAAAACATTTTGATTTTTCACTAATTTTCAGCCAATTTTTCGGACTTTTTCGGATATTTTCAGTCATAAAAAAGAAAAAAAAATACTTTGAATATTTTGAGCTTAACGACAGGTTCTGGAACAGTGTAAACTGGCGGCGGTGGAACTATCGGATCGAAAATCGGGATGAATTCTTCGAAAAGTCGTTCAGAAGACGTTGGAAAATATGGAATCGGAGGAATCGGAGGAGGTGGTGGCGGCGGTGGAAGATGATGAATTTGAGGGGATTCTGATGGTGGTGTCGACGGAATTTTTGTGGAATTTGGAAAATCGGGAATTAGGGGCGTGGCTTCAGCATCGACTTCGGAGTTGTAGCCGAGTTGGTGAGGGGACATGTTATCGTAGATTGGAATGCTGAAAATCGATATTTTGAGATTCTGAATATTTAAAATTCAGAGATTTCGGGATTTTAAGGTTCTAAATTTTTGAAATTTCGAACAAAAAATTTTGGTCCGAAGTACAGATTCTTAGAATTCTGAAAGTTTAAAATTTCTAAAAATTTGAGTTTTTGAAAATTTTCAAATTCATATAATTTTCCTTACTTATAACTCGGCGGTGTGGGATGTCGAATCACTTTTGGTTTTTCCGGTTTTTTCAAATTTTCGTTTTTCAATTTTTTCGATTTCAGCATCGCCGCAGACTCGTCTCCGTGAATTTCGTAGTT</canonical>
            <polymorphic>TCTTTTTTGAAAATTCAAATTCTCGAAAAAAAAACAAAAATTTTTGAATGTCTCAACAATTTTCGTTCAAATTTCTTGAAAAAAAAACTATTAAAATGTTGAAAATTCTCGAAATTTTTCTGAATTTTCGATTTCGAAAAGTTTTGAAAAATTCGGTTGAAAATCCTCAAAAATGTGATTTTTTCTTAATTCTCAAATTTTCAATTTTTTTTGTGAAATTCAATTTTTTCTCGCATTCCGATTTTAAGAATTTTTGAATTTTTTTGATTTTCTCATTTTTTGACCCAAAATTTAAATTAAAACATTTTGATTTTTCACTAATTTTCAGCCAATTTTTCGGACTTTTTCGGATATTTTCAGTCATAAAAAAGAAAAAAAAATACTTTGAATATTTTGAGCTTAACGACAGGTTCTGGAACAGTGTAAACTGGCGGCGGTGGAACTATCGGATCGAAAATCGGGATGAATTCTTCGAAAAGTCGTTCAGAAGACGTTGGAARATATGGAATCGGAGGAATCGGAGGAGGTGGTGGCGGCGGTGGAAGATGATGAATTTGAGGGGATTCTGATGGTGGTGTCGACGGAATTTTTGTGGAATTTGGAAAATCGGGAATTAGGGGCGTGGCTTCAGCATCGACTTCGGAGTTGTAGCCGAGTTGGTGAGGGGACATGTTATCGTAGATTGGAATGCTGAAAATCGATATTTTGAGATTCTGAATATTTAAAATTCAGAGATTTCGGGATTTTAAGGTTCTAAATTTTTGAAATTTCGAACAAAAAATTTTGGTCCGAAGTACAGATTCTTAGAATTCTGAAAGTTTAAAATTTCTAAAAATTTGAGTTTTTGAAAATTTTCAAATTCATATAATTTTCCTTACTTATAACTCGGCGGTGTGGGATGTCGAATCACTTTTGGTTTTTCCGGTTTTTTCAAATTTTCGTTTTTCAATTTTTTCGATTTCAGCATCGCCGCAGACTCGTCTCCGTGAATTTCGTAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTAATTTTCAGCCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AATCCCCTCAAATTCATCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACTAATTTTCAGCCAATTTTTCGGACTTTTTCGGATATTTTCAGTCATAAAAAAGAAAAAAAAATACTTTGAATATTTTGAGCTTAACGACAGGTTCTGGAACAGTGTAAACTGGCGGCGGTGGAACTATCGGATCGAAAATCGGGATGAATTCTTCGAAAAGTCGTTCAGAAGACGTTGGAAAATATGGAATCGGAGGAATCGGAGGAGGTGGTGGCGGCGGTGGAAGATGATGAATTTGAGGGGATT</canonical_amplicon>
		<polymorphic_amplicon>CACTAATTTTCAGCCAATTTTTCGGACTTTTTCGGATATTTTCAGTCATAAAAAAGAAAAAAAAATACTTTGAATATTTTGAGCTTAACGACAGGTTCTGGAACAGTGTAAACTGGCGGCGGTGGAACTATCGGATCGAAAATCGGGATGAATTCTTCGAAAAGTCGTTCAGAAGACGTTGGAARATATGGAATCGGAGGAATCGGAGGAGGTGGTGGCGGCGGTGGAAGATGATGAATTTGAGGGGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3378</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>68179</contig_pos>
        <strand>+</strand>
        <context>GGGAATTAGG[A/G]GCGTGGCTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGGTGGTGTCGACGGAATTTTTGTGGAATTTGGAAAATCGGGAATTAGG</left_flank>
        <right_flank>GCGTGGCTTCAGCATCGACTTCGGAGTTGTAGCCGAGTTGGTGAGGGGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAATTTTCGATTTCGAAAAGTTTTGAAAAATTCGGTTGAAAATCCTCAAAAATGTGATTTTTTCTTAATTCTCAAATTTTCAATTTTTTTTGTGAAATTCAATTTTTTCTCGCATTCCGATTTTAAGAATTTTTGAATTTTTTTGATTTTCTCATTTTTTGACCCAAAATTTAAATTAAAACATTTTGATTTTTCACTAATTTTCAGCCAATTTTTCGGACTTTTTCGGATATTTTCAGTCATAAAAAAGAAAAAAAAATACTTTGAATATTTTGAGCTTAACGACAGGTTCTGGAACAGTGTAAACTGGCGGCGGTGGAACTATCGGATCGAAAATCGGGATGAATTCTTCGAAAAGTCGTTCAGAAGACGTTGGAAAATATGGAATCGGAGGAATCGGAGGAGGTGGTGGCGGCGGTGGAAGATGATGAATTTGAGGGGATTCTGATGGTGGTGTCGACGGAATTTTTGTGGAATTTGGAAAATCGGGAATTAGGGGCGTGGCTTCAGCATCGACTTCGGAGTTGTAGCCGAGTTGGTGAGGGGACATGTTATCGTAGATTGGAATGCTGAAAATCGATATTTTGAGATTCTGAATATTTAAAATTCAGAGATTTCGGGATTTTAAGGTTCTAAATTTTTGAAATTTCGAACAAAAAATTTTGGTCCGAAGTACAGATTCTTAGAATTCTGAAAGTTTAAAATTTCTAAAAATTTGAGTTTTTGAAAATTTTCAAATTCATATAATTTTCCTTACTTATAACTCGGCGGTGTGGGATGTCGAATCACTTTTGGTTTTTCCGGTTTTTTCAAATTTTCGTTTTTCAATTTTTTCGATTTCAGCATCGCCGCAGACTCGTCTCCGTGAATTTCGTAGTTCTGAAATTGGATTATTTTGGGATTTTTGGGATTTTCGAAAGATTTTTTAGATTTCAGACTTTCAAAACTCAAAAATTTGGATTTTTTGAAGTATGTTTGGGATTTTCTCAGAACAAATT</canonical>
            <polymorphic>CTGAATTTTCGATTTCGAAAAGTTTTGAAAAATTCGGTTGAAAATCCTCAAAAATGTGATTTTTTCTTAATTCTCAAATTTTCAATTTTTTTTGTGAAATTCAATTTTTTCTCGCATTCCGATTTTAAGAATTTTTGAATTTTTTTGATTTTCTCATTTTTTGACCCAAAATTTAAATTAAAACATTTTGATTTTTCACTAATTTTCAGCCAATTTTTCGGACTTTTTCGGATATTTTCAGTCATAAAAAAGAAAAAAAAATACTTTGAATATTTTGAGCTTAACGACAGGTTCTGGAACAGTGTAAACTGGCGGCGGTGGAACTATCGGATCGAAAATCGGGATGAATTCTTCGAAAAGTCGTTCAGAAGACGTTGGAAAATATGGAATCGGAGGAATCGGAGGAGGTGGTGGCGGCGGTGGAAGATGATGAATTTGAGGGGATTCTGATGGTGGTGTCGACGGAATTTTTGTGGAATTTGGAAAATCGGGAATTAGGRGCGTGGCTTCAGCATCGACTTCGGAGTTGTAGCCGAGTTGGTGAGGGGACATGTTATCGTAGATTGGAATGCTGAAAATCGATATTTTGAGATTCTGAATATTTAAAATTCAGAGATTTCGGGATTTTAAGGTTCTAAATTTTTGAAATTTCGAACAAAAAATTTTGGTCCGAAGTACAGATTCTTAGAATTCTGAAAGTTTAAAATTTCTAAAAATTTGAGTTTTTGAAAATTTTCAAATTCATATAATTTTCCTTACTTATAACTCGGCGGTGTGGGATGTCGAATCACTTTTGGTTTTTCCGGTTTTTTCAAATTTTCGTTTTTCAATTTTTTCGATTTCAGCATCGCCGCAGACTCGTCTCCGTGAATTTCGTAGTTCTGAAATTGGATTATTTTGGGATTTTTGGGATTTTCGAAAGATTTTTTAGATTTCAGACTTTCAAAACTCAAAAATTTGGATTTTTTGAAGTATGTTTGGGATTTTCTCAGAACAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTCGAAAAGTCGTTCAG</pcr_primer_p1>
		<pcr_primer_p2>GCATTCCAATCTACGATAACAT</pcr_primer_p2>
		<pcr_amplicon_size>225</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTCGAAAAGTCGTTCAGAAGACGTTGGAAAATATGGAATCGGAGGAATCGGAGGAGGTGGTGGCGGCGGTGGAAGATGATGAATTTGAGGGGATTCTGATGGTGGTGTCGACGGAATTTTTGTGGAATTTGGAAAATCGGGAATTAGGGGCGTGGCTTCAGCATCGACTTCGGAGTTGTAGCCGAGTTGGTGAGGGGACATGTTATCGTAGATTGGAATGC</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTCGAAAAGTCGTTCAGAAGACGTTGGAAAATATGGAATCGGAGGAATCGGAGGAGGTGGTGGCGGCGGTGGAAGATGATGAATTTGAGGGGATTCTGATGGTGGTGTCGACGGAATTTTTGTGGAATTTGGAAAATCGGGAATTAGGRGCGTGGCTTCAGCATCGACTTCGGAGTTGTAGCCGAGTTGGTGAGGGGACATGTTATCGTAGATTGGAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3379</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>68190</contig_pos>
        <strand>+</strand>
        <context>GCGTGGCTTC[A/G]GCATCGACTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACGGAATTTTTGTGGAATTTGGAAAATCGGGAATTAGGGGCGTGGCTTC</left_flank>
        <right_flank>GCATCGACTTCGGAGTTGTAGCCGAGTTGGTGAGGGGACATGTTATCGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCGAAAAGTTTTGAAAAATTCGGTTGAAAATCCTCAAAAATGTGATTTTTTCTTAATTCTCAAATTTTCAATTTTTTTTGTGAAATTCAATTTTTTCTCGCATTCCGATTTTAAGAATTTTTGAATTTTTTTGATTTTCTCATTTTTTGACCCAAAATTTAAATTAAAACATTTTGATTTTTCACTAATTTTCAGCCAATTTTTCGGACTTTTTCGGATATTTTCAGTCATAAAAAAGAAAAAAAAATACTTTGAATATTTTGAGCTTAACGACAGGTTCTGGAACAGTGTAAACTGGCGGCGGTGGAACTATCGGATCGAAAATCGGGATGAATTCTTCGAAAAGTCGTTCAGAAGACGTTGGAAAATATGGAATCGGAGGAATCGGAGGAGGTGGTGGCGGCGGTGGAAGATGATGAATTTGAGGGGATTCTGATGGTGGTGTCGACGGAATTTTTGTGGAATTTGGAAAATCGGGAATTAGGGGCGTGGCTTCAGCATCGACTTCGGAGTTGTAGCCGAGTTGGTGAGGGGACATGTTATCGTAGATTGGAATGCTGAAAATCGATATTTTGAGATTCTGAATATTTAAAATTCAGAGATTTCGGGATTTTAAGGTTCTAAATTTTTGAAATTTCGAACAAAAAATTTTGGTCCGAAGTACAGATTCTTAGAATTCTGAAAGTTTAAAATTTCTAAAAATTTGAGTTTTTGAAAATTTTCAAATTCATATAATTTTCCTTACTTATAACTCGGCGGTGTGGGATGTCGAATCACTTTTGGTTTTTCCGGTTTTTTCAAATTTTCGTTTTTCAATTTTTTCGATTTCAGCATCGCCGCAGACTCGTCTCCGTGAATTTCGTAGTTCTGAAATTGGATTATTTTGGGATTTTTGGGATTTTCGAAAGATTTTTTAGATTTCAGACTTTCAAAACTCAAAAATTTGGATTTTTTGAAGTATGTTTGGGATTTTCTCAGAACAAATTTCGAATTTTTA</canonical>
            <polymorphic>ATTTCGAAAAGTTTTGAAAAATTCGGTTGAAAATCCTCAAAAATGTGATTTTTTCTTAATTCTCAAATTTTCAATTTTTTTTGTGAAATTCAATTTTTTCTCGCATTCCGATTTTAAGAATTTTTGAATTTTTTTGATTTTCTCATTTTTTGACCCAAAATTTAAATTAAAACATTTTGATTTTTCACTAATTTTCAGCCAATTTTTCGGACTTTTTCGGATATTTTCAGTCATAAAAAAGAAAAAAAAATACTTTGAATATTTTGAGCTTAACGACAGGTTCTGGAACAGTGTAAACTGGCGGCGGTGGAACTATCGGATCGAAAATCGGGATGAATTCTTCGAAAAGTCGTTCAGAAGACGTTGGAAAATATGGAATCGGAGGAATCGGAGGAGGTGGTGGCGGCGGTGGAAGATGATGAATTTGAGGGGATTCTGATGGTGGTGTCGACGGAATTTTTGTGGAATTTGGAAAATCGGGAATTAGGGGCGTGGCTTCRGCATCGACTTCGGAGTTGTAGCCGAGTTGGTGAGGGGACATGTTATCGTAGATTGGAATGCTGAAAATCGATATTTTGAGATTCTGAATATTTAAAATTCAGAGATTTCGGGATTTTAAGGTTCTAAATTTTTGAAATTTCGAACAAAAAATTTTGGTCCGAAGTACAGATTCTTAGAATTCTGAAAGTTTAAAATTTCTAAAAATTTGAGTTTTTGAAAATTTTCAAATTCATATAATTTTCCTTACTTATAACTCGGCGGTGTGGGATGTCGAATCACTTTTGGTTTTTCCGGTTTTTTCAAATTTTCGTTTTTCAATTTTTTCGATTTCAGCATCGCCGCAGACTCGTCTCCGTGAATTTCGTAGTTCTGAAATTGGATTATTTTGGGATTTTTGGGATTTTCGAAAGATTTTTTAGATTTCAGACTTTCAAAACTCAAAAATTTGGATTTTTTGAAGTATGTTTGGGATTTTCTCAGAACAAATTTCGAATTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTCGAAAAGTCGTTCAG</pcr_primer_p1>
		<pcr_primer_p2>GCATTCCAATCTACGATAACAT</pcr_primer_p2>
		<pcr_amplicon_size>225</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTCGAAAAGTCGTTCAGAAGACGTTGGAAAATATGGAATCGGAGGAATCGGAGGAGGTGGTGGCGGCGGTGGAAGATGATGAATTTGAGGGGATTCTGATGGTGGTGTCGACGGAATTTTTGTGGAATTTGGAAAATCGGGAATTAGGGGCGTGGCTTCAGCATCGACTTCGGAGTTGTAGCCGAGTTGGTGAGGGGACATGTTATCGTAGATTGGAATGC</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTCGAAAAGTCGTTCAGAAGACGTTGGAAAATATGGAATCGGAGGAATCGGAGGAGGTGGTGGCGGCGGTGGAAGATGATGAATTTGAGGGGATTCTGATGGTGGTGTCGACGGAATTTTTGTGGAATTTGGAAAATCGGGAATTAGGGGCGTGGCTTCRGCATCGACTTCGGAGTTGTAGCCGAGTTGGTGAGGGGACATGTTATCGTAGATTGGAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3390</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>90944</contig_pos>
        <strand>+</strand>
        <context>GTAGATTTTG[A/T]ACCTTAATAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCGGTTCTAAAACATCCCAGTTGCGAAATGACCTTTTTTCGTAGATTTTG</left_flank>
        <right_flank>ACCTTAATATTCGCGAATTCCGTTGCCATTGAAACCAGACCCAAAACCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGATTTTGAAAATTTGGTCAAATCGACGCAACCGGCTGATATGGTTTGTACAAAACATTTTGAAACTGATCATTTCGAAACCGGACGTTCTAGAACTGTCTATTTTGCAACTATACTAAAACACCTGATTTCGGGGTTTGAAGTAACGGTTCCTAAACGTCCGGTTCCAAAGTGGTCATCTAGCTTACTATTTCACAACCGGACACCTTGGAACTGACATTCTAGAACCGATTTTCCTCCAAAATGGACATTTCGCAACCGTTCTAAAATGACCGGTTCTGAAACTTCGCGGTTATAATATGGTGCGGTTCTTAAGCGTCGCGGTTTTAAAATGTTGTAGTTTTAAAATATCGCGGTTCTAAAACGTCGCATTTCTAAAACTTTACAGTTCTAAAATGACGCGGTTCTAAAATGTCAAAGATCTGAAAAATTGCTGTTATAAAACGTCGCGGTTCTAAAACATCCCAGTTGCGAAATGACCTTTTTTCGTAGATTTTGAACCTTAATATTCGCGAATTCCGTTGCCATTGAAACCAGACCCAAAACCATATCATCCGGCATAAAAGACGTAAATGCGACCGGTAGTCCAACGCCTTTTTCTGCTTCATTCAACAATTGAATCGTCTCGTATTTCACATAAAAATTCGATGCGATTCGTCCCAAATCCGTCGAATTCAGGTATTCGGTTCTGGAAAAAATGGATCATTTTAGTAGATATTAGACCAATTCCAGTCAATTTTGGACCATTTTAAGACAGTTTTAGGCCTTTTATAGTCAATTTTTGGACTATTATTCGTCATATTTGACCCCTTCTAGTCAATTTTAAACCTCTACTCACGCCATATCATATCGAATCATTTTATTCTGATCCAATTGAATCGCCGCTTCTCGAATTACATTTCCAAAGTGATCACGTAGATTTGGATCTCGTTCTATGGCATTATAAGCGATACCATAAGCCATTGGGTTCTGAAAAATTAGAATTTTGTACTTTTTCGG</canonical>
            <polymorphic>TCGATTTTGAAAATTTGGTCAAATCGACGCAACCGGCTGATATGGTTTGTACAAAACATTTTGAAACTGATCATTTCGAAACCGGACGTTCTAGAACTGTCTATTTTGCAACTATACTAAAACACCTGATTTCGGGGTTTGAAGTAACGGTTCCTAAACGTCCGGTTCCAAAGTGGTCATCTAGCTTACTATTTCACAACCGGACACCTTGGAACTGACATTCTAGAACCGATTTTCCTCCAAAATGGACATTTCGCAACCGTTCTAAAATGACCGGTTCTGAAACTTCGCGGTTATAATATGGTGCGGTTCTTAAGCGTCGCGGTTTTAAAATGTTGTAGTTTTAAAATATCGCGGTTCTAAAACGTCGCATTTCTAAAACTTTACAGTTCTAAAATGACGCGGTTCTAAAATGTCAAAGATCTGAAAAATTGCTGTTATAAAACGTCGCGGTTCTAAAACATCCCAGTTGCGAAATGACCTTTTTTCGTAGATTTTGWACCTTAATATTCGCGAATTCCGTTGCCATTGAAACCAGACCCAAAACCATATCATCCGGCATAAAAGACGTAAATGCGACCGGTAGTCCAACGCCTTTTTCTGCTTCATTCAACAATTGAATCGTCTCGTATTTCACATAAAAATTCGATGCGATTCGTCCCAAATCCGTCGAATTCAGGTATTCGGTTCTGGAAAAAATGGATCATTTTAGTAGATATTAGACCAATTCCAGTCAATTTTGGACCATTTTAAGACAGTTTTAGGCCTTTTATAGTCAATTTTTGGACTATTATTCGTCATATTTGACCCCTTCTAGTCAATTTTAAACCTCTACTCACGCCATATCATATCGAATCATTTTATTCTGATCCAATTGAATCGCCGCTTCTCGAATTACATTTCCAAAGTGATCACGTAGATTTGGATCTCGTTCTATGGCATTATAAGCGATACCATAAGCCATTGGGTTCTGAAAAATTAGAATTTTGTACTTTTTCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTCCTCCAAAATGGAC</pcr_primer_p1>
		<pcr_primer_p2>GATATGGTTTTGGGTCTGGT</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>GATTTTCCTCCAAAATGGACATTTCGCAACCGTTCTAAAATGACCGGTTCTGAAACTTCGCGGTTATAATATGGTGCGGTTCTTAAGCGTCGCGGTTTTAAAATGTTGTAGTTTTAAAATATCGCGGTTCTAAAACGTCGCATTTCTAAAACTTTACAGTTCTAAAATGACGCGGTTCTAAAATGTCAAAGATCTGAAAAATTGCTGTTATAAAACGTCGCGGTTCTAAAACATCCCAGTTGCGAAATGACCTTTTTTCGTAGATTTTGAACCTTAATATTCGCGAATTCCGTTGCCATTGAAACCAGACCCAAAACCATATC</canonical_amplicon>
		<polymorphic_amplicon>GATTTTCCTCCAAAATGGACATTTCGCAACCGTTCTAAAATGACCGGTTCTGAAACTTCGCGGTTATAATATGGTGCGGTTCTTAAGCGTCGCGGTTTTAAAATGTTGTAGTTTTAAAATATCGCGGTTCTAAAACGTCGCATTTCTAAAACTTTACAGTTCTAAAATGACGCGGTTCTAAAATGTCAAAGATCTGAAAAATTGCTGTTATAAAACGTCGCGGTTCTAAAACATCCCAGTTGCGAAATGACCTTTTTTCGTAGATTTTGWACCTTAATATTCGCGAATTCCGTTGCCATTGAAACCAGACCCAAAACCATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3391</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>96146</contig_pos>
        <strand></strand>
        <context>TTTCAGATTT[C/T]ACCTGTATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGAGTTTCAGTTTCTTCCAAAGTTCAAAAATTTGGAAAATTTCAGATTT</left_flank>
        <right_flank>ACCTGTATTTCCTTTTTTGCCAATTCCAGCTCCAACTTCTCCTCATCCCC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCTCGAAATGGCAATATTTCAAAACTTTTCAGAAATTCTGAATCTTCAAAAATTCGAGTTTAGAATTCTAAAATTCCAAAGTTCGCAGAAAATCGGAATCTCGAAATTCCAAAATCTTGATATTCCAAAAATTCAGAATGAAGCATTTTCCAGAATCTCCCGTAATTCTAGAATTTGAGTTTTTTTCACAAATTAAAAATTTTTGAATTTCAGAATCTCAAAATCTTTGAATTTTGAAAATCACAAAAGATCGAAATATAGGATAATAGGCATTTTAGATTTTTAGAATCTTTCAGAATTTCGAAATTTCAAAATTCAAAATTCCAGAATTATGGATTTTCGAATTACAGAAATAGAGTTCCGGAATCTCAAAATTAAAATTACAACATTTCATTAATTAAAAAATTACATAAAGTAAAATTACAAAATTTCGAAAATTAGAAACTTCGGAGTTTCAGTTTCTTCCAAAGTTCAAAAATTTGGAAAATTTCAGATTTCACCTGTATTTCCTTTTTTGCCAATTCCAGCTCCAACTTCTCCTCATCCCCAAACGCATGTATCACTCGATTCAACTCTCTTCTCGTTCGTTTTTCCTCTTTCCGCATTTCTCGCCGTTTCTCATTTTGTGACGTCGATTGGACACTGACAGTTTGCAGAAATCCAGGTACTGATGGCTGAAAAAGTAGGGGGAATTTGAAATTTTTCGAATTTAATGGAATTTAATTGGTTACGGTATGCTTTATTTTTTGTAGTTCCTGGGAACAATAGTACAACTACAGTAAACCTGAATTCTAGATGAAGATACTGTAGCTACTCTAGAGCTACAGTATCTACAGTGAAATGTCTACAGTAAGCCGGCCGTATAAACAACAGGTAAACCTAACCACGTGGAGTTTTCAAATAGCTACAGTATACCTACAGTATAACCTTATTTGGATAGTAGATAGGTACCTTGTAGCTAACTACAGTATCTCTACAGTAACCCAGTATACCAGTCT</canonical>
            <polymorphic>AATCTCGAAATGGCAATATTTCAAAACTTTTCAGAAATTCTGAATCTTCAAAAATTCGAGTTTAGAATTCTAAAATTCCAAAGTTCGCAGAAAATCGGAATCTCGAAATTCCAAAATCTTGATATTCCAAAAATTCAGAATGAAGCATTTTCCAGAATCTCCCGTAATTCTAGAATTTGAGTTTTTTTCACAAATTAAAAATTTTTGAATTTCAGAATCTCAAAATCTTTGAATTTTGAAAATCACAAAAGATCGAAATATAGGATAATAGGCATTTTAGATTTTTAGAATCTTTCAGAATTTCGAAATTTCAAAATTCAAAATTCCAGAATTATGGATTTTCGAATTACAGAAATAGAGTTCCGGAATCTCAAAATTAAAATTACAACATTTCATTAATTAAAAAATTACATAAAGTAAAATTACAAAATTTCGAAAATTAGAAACTTCGGAGTTTCAGTTTCTTCCAAAGTTCAAAAATTTGGAAAATTTCAGATTTYACCTGTATTTCCTTTTTTGCCAATTCCAGCTCCAACTTCTCCTCATCCCCAAACGCATGTATCACTCGATTCAACTCTCTTCTCGTTCGTTTTTCCTCTTTCCGCATTTCTCGCCGTTTCTCATTTTGTGACGTCGATTGGACACTGACAGTTTGCAGAAATCCAGGTACTGATGGCTGAAAAAGTAGGGGGAATTTGAAATTTTTCGAATTTAATGGAATTTAATTGGTTACGGTATGCTTTATTTTTTGTAGTTCCTGGGAACAATAGTACAACTACAGTAAACCTGAATTCTAGATGAAGATACTGTAGCTACTCTAGAGCTACAGTATCTACAGTGAAATGTCTACAGTAAGCCGGCCGTATAAACAACAGGTAAACCTAACCACGTGGAGTTTTCAAATAGCTACAGTATACCTACAGTATAACCTTATTTGGATAGTAGATAGGTACCTTGTAGCTAACTACAGTATCTCTACAGTAACCCAGTATACCAGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>256 196 190 108 66 63 55 48 14 4</canonical_bands>
                <polymorphic_bands>319 196 190 108 66 55 48 14 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTTCGGAGTTTCAGTTTCT</pcr_primer_p1>
		<pcr_primer_p2>CCTACTTTTTCAGCCATCAGTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AACTTCGGAGTTTCAGTTTCTTCCAAAGTTCAAAAATTTGGAAAATTTCAGATTTCACCTGTATTTCCTTTTTTGCCAATTCCAGCTCCAACTTCTCCTCATCCCCAAACGCATGTATCACTCGATTCAACTCTCTTCTCGTTCGTTTTTCCTCTTTCCGCATTTCTCGCCGTTTCTCATTTTGTGACGTCGATTGGACACTGACAGTTTGCAGAAATCCAGGTACTGATGGCTGAAAAAGTAGG</canonical_amplicon>
		<polymorphic_amplicon>AACTTCGGAGTTTCAGTTTCTTCCAAAGTTCAAAAATTTGGAAAATTTCAGATTTYACCTGTATTTCCTTTTTTGCCAATTCCAGCTCCAACTTCTCCTCATCCCCAAACGCATGTATCACTCGATTCAACTCTCTTCTCGTTCGTTTTTCCTCTTTCCGCATTTCTCGCCGTTTCTCATTTTGTGACGTCGATTGGACACTGACAGTTTGCAGAAATCCAGGTACTGATGGCTGAAAAAGTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3392</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>96437</contig_pos>
        <strand></strand>
        <context>GTAAACCTGA[A/G]TTCTAGATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTATTTTTTGTAGTTCCTGGGAACAATAGTACAACTACAGTAAACCTGA</left_flank>
        <right_flank>TTCTAGATGAAGATACTGTAGCTACTCTAGAGCTACAGTATCTACAGTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTCAGAATTTCGAAATTTCAAAATTCAAAATTCCAGAATTATGGATTTTCGAATTACAGAAATAGAGTTCCGGAATCTCAAAATTAAAATTACAACATTTCATTAATTAAAAAATTACATAAAGTAAAATTACAAAATTTCGAAAATTAGAAACTTCGGAGTTTCAGTTTCTTCCAAAGTTCAAAAATTTGGAAAATTTCAGATTTCACCTGTATTTCCTTTTTTGCCAATTCCAGCTCCAACTTCTCCTCATCCCCAAACGCATGTATCACTCGATTCAACTCTCTTCTCGTTCGTTTTTCCTCTTTCCGCATTTCTCGCCGTTTCTCATTTTGTGACGTCGATTGGACACTGACAGTTTGCAGAAATCCAGGTACTGATGGCTGAAAAAGTAGGGGGAATTTGAAATTTTTCGAATTTAATGGAATTTAATTGGTTACGGTATGCTTTATTTTTTGTAGTTCCTGGGAACAATAGTACAACTACAGTAAACCTGAATTCTAGATGAAGATACTGTAGCTACTCTAGAGCTACAGTATCTACAGTGAAATGTCTACAGTAAGCCGGCCGTATAAACAACAGGTAAACCTAACCACGTGGAGTTTTCAAATAGCTACAGTATACCTACAGTATAACCTTATTTGGATAGTAGATAGGTACCTTGTAGCTAACTACAGTATCTCTACAGTAACCCAGTATACCAGTCTAAAGTAATCCAAGTTACGACAACAAGCGGGGGCTGTTGTTGCACTATTTAGCTTTTCTATACAAATAATTATTTTAGAACAATGTGAGTTTTTATCTGAATTTCGGAAAAAATGTCTAAAAGGAGCTATTAGACTTGGAATTTCAAGTTCTCTTGATAGTTTCCCATGAGAGCATATCTATTCTTTTATGACACCTGCGGCGGTTTACAATCTGAGGTGTGAATCCATTTCGCACCTGTTTTACTGTCTTTTACTACTTCAAATACCAACTGAAGACGTATTAGGGCTTGT</canonical>
            <polymorphic>CTTTCAGAATTTCGAAATTTCAAAATTCAAAATTCCAGAATTATGGATTTTCGAATTACAGAAATAGAGTTCCGGAATCTCAAAATTAAAATTACAACATTTCATTAATTAAAAAATTACATAAAGTAAAATTACAAAATTTCGAAAATTAGAAACTTCGGAGTTTCAGTTTCTTCCAAAGTTCAAAAATTTGGAAAATTTCAGATTTCACCTGTATTTCCTTTTTTGCCAATTCCAGCTCCAACTTCTCCTCATCCCCAAACGCATGTATCACTCGATTCAACTCTCTTCTCGTTCGTTTTTCCTCTTTCCGCATTTCTCGCCGTTTCTCATTTTGTGACGTCGATTGGACACTGACAGTTTGCAGAAATCCAGGTACTGATGGCTGAAAAAGTAGGGGGAATTTGAAATTTTTCGAATTTAATGGAATTTAATTGGTTACGGTATGCTTTATTTTTTGTAGTTCCTGGGAACAATAGTACAACTACAGTAAACCTGARTTCTAGATGAAGATACTGTAGCTACTCTAGAGCTACAGTATCTACAGTGAAATGTCTACAGTAAGCCGGCCGTATAAACAACAGGTAAACCTAACCACGTGGAGTTTTCAAATAGCTACAGTATACCTACAGTATAACCTTATTTGGATAGTAGATAGGTACCTTGTAGCTAACTACAGTATCTCTACAGTAACCCAGTATACCAGTCTAAAGTAATCCAAGTTACGACAACAAGCGGGGGCTGTTGTTGCACTATTTAGCTTTTCTATACAAATAATTATTTTAGAACAATGTGAGTTTTTATCTGAATTTCGGAAAAAATGTCTAAAAGGAGCTATTAGACTTGGAATTTCAAGTTCTCTTGATAGTTTCCCATGAGAGCATATCTATTCTTTTATGACACCTGCGGCGGTTTACAATCTGAGGTGTGAATCCATTTCGCACCTGTTTTACTGTCTTTTACTACTTCAAATACCAACTGAAGACGTATTAGGGCTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>309 205 153 107 71 50 40 10 9 9 8 8 7 7 7</canonical_bands>
                <polymorphic_bands>380 205 153 107 50 40 10 9 9 8 8 7 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>277 171 153 66 41 40 34 32 30 17 15 15 10 9 9 9 8 8 8 8 8 7 7 7 6 5</canonical_bands>
                <polymorphic_bands>343 171 153 41 40 34 32 30 17 15 15 10 9 9 9 8 8 8 8 8 7 7 7 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTACTGATGGCTGAAAAAGTA</pcr_primer_p1>
		<pcr_primer_p2>CTGTAGCTATTTGAAAACTCCAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGTACTGATGGCTGAAAAAGTAGGGGGAATTTGAAATTTTTCGAATTTAATGGAATTTAATTGGTTACGGTATGCTTTATTTTTTGTAGTTCCTGGGAACAATAGTACAACTACAGTAAACCTGAATTCTAGATGAAGATACTGTAGCTACTCTAGAGCTACAGTATCTACAGTGAAATGTCTACAGTAAGCCGGCCGTATAAACAACAGGTAAACCTAACCACGTGGAGTTTTCAAATAGCTACAG</canonical_amplicon>
		<polymorphic_amplicon>GGTACTGATGGCTGAAAAAGTAGGGGGAATTTGAAATTTTTCGAATTTAATGGAATTTAATTGGTTACGGTATGCTTTATTTTTTGTAGTTCCTGGGAACAATAGTACAACTACAGTAAACCTGARTTCTAGATGAAGATACTGTAGCTACTCTAGAGCTACAGTATCTACAGTGAAATGTCTACAGTAAGCCGGCCGTATAAACAACAGGTAAACCTAACCACGTGGAGTTTTCAAATAGCTACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3393</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>103033</contig_pos>
        <strand>+</strand>
        <context>TTTTTCAGAG[C/T]CATTTCTAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAACTAAGCTAAAAACATGCAAAAAACCACAAAATTGAATTTTTCAGAG</left_flank>
        <right_flank>CATTTCTAGATTCTCAAACTATTTTCCCCATTATTTCCCTCTTTTAGGGG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAAAGTGTCTGGAAAGTAGACCAAAAGCGTATCAGAAATCGGCTGAAAAATGCTTCCAGAACTTCCAGAAGTCGATGGAACTTGTGGAAGACTAGGTGGCGCTTCTGGAGCCGAGAAATCTGCAGATTCCGCTTCAGAATTCGGCCATTCTAGAAATTCTGAATCCACGTGGATTGTTTGATGATAGCTGACAGCCACTTTGGGAGGATCTGGGGGATCTGAAAGGTTTTTTGATCAACACAATTTTTTTCTTCAACAAACCATCTCCAATTCTTTCGATAAAGCCGAGAAGATCCATTGAATCGGTTCTAGCTAACTGAAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACGACAAAAACGATCTAATATTGCTTGAAATTTCGCAATTCCAAAGGCAAAGACACTGAAATCGATAAATTCAAATTCTGACATATTTAACTAAGCTAAAAACATGCAAAAAACCACAAAATTGAATTTTTCAGAGCCATTTCTAGATTCTCAAACTATTTTCCCCATTATTTCCCTCTTTTAGGGGTCCTGGCCGCGTGGCCTAGCGTTTTTCTAGTCCGCGACCCAGTGAATTGGCGGGGTGTTTGCCCTTTCTCGCATTTTTCTGTCTCTGACATTGATTTTTTGTTGTGAAAATCCGCAAAAATTATCTAAAAAAAATAATAATAAAAATACCGTAATTTAAAGGAGCATAAGCTAAAGAGTTTTGAGGACTTCGCAACGAAAACCGTACCCAGCGCGAAAAATCCACGTTTGAACTTTTTTTCTGTCGATTGTCAGCTGGTTTTTAGCGATTTTCAGCGATTTCCATCGAGAAAAATGGGTTTTTATCTGAAAATACCCTTTTTCGAGGTTTTTAATGCTAAGAATTCAGCAAAATTGTCGGAACATTACGAAATTTCGAGAAAAAGTAGGGAAAAATTGAAAAAAAATTGATTCGGGTGTTTTTTTGTCTGAAAAATTGTTTAAAATAGCA</canonical>
            <polymorphic>TCAAAAGTGTCTGGAAAGTAGACCAAAAGCGTATCAGAAATCGGCTGAAAAATGCTTCCAGAACTTCCAGAAGTCGATGGAACTTGTGGAAGACTAGGTGGCGCTTCTGGAGCCGAGAAATCTGCAGATTCCGCTTCAGAATTCGGCCATTCTAGAAATTCTGAATCCACGTGGATTGTTTGATGATAGCTGACAGCCACTTTGGGAGGATCTGGGGGATCTGAAAGGTTTTTTGATCAACACAATTTTTTTCTTCAACAAACCATCTCCAATTCTTTCGATAAAGCCGAGAAGATCCATTGAATCGGTTCTAGCTAACTGAAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACGACAAAAACGATCTAATATTGCTTGAAATTTCGCAATTCCAAAGGCAAAGACACTGAAATCGATAAATTCAAATTCTGACATATTTAACTAAGCTAAAAACATGCAAAAAACCACAAAATTGAATTTTTCAGAGYCATTTCTAGATTCTCAAACTATTTTCCCCATTATTTCCCTCTTTTAGGGGTCCTGGCCGCGTGGCCTAGCGTTTTTCTAGTCCGCGACCCAGTGAATTGGCGGGGTGTTTGCCCTTTCTCGCATTTTTCTGTCTCTGACATTGATTTTTTGTTGTGAAAATCCGCAAAAATTATCTAAAAAAAATAATAATAAAAATACCGTAATTTAAAGGAGCATAAGCTAAAGAGTTTTGAGGACTTCGCAACGAAAACCGTACCCAGCGCGAAAAATCCACGTTTGAACTTTTTTTCTGTCGATTGTCAGCTGGTTTTTAGCGATTTTCAGCGATTTCCATCGAGAAAAATGGGTTTTTATCTGAAAATACCCTTTTTCGAGGTTTTTAATGCTAAGAATTCAGCAAAATTGTCGGAACATTACGAAATTTCGAGAAAAAGTAGGGAAAAATTGAAAAAAAATTGATTCGGGTGTTTTTTTGTCTGAAAAATTGTTTAAAATAGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>196 156 144 90 84 68 57 44 43 41 34 28 8 7</canonical_bands>
                <polymorphic_bands>196 156 144 98 90 84 68 44 43 34 28 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAATCGGTTCTAGCTAACTG</pcr_primer_p1>
		<pcr_primer_p2>ACCCCTAAAAGAGGGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGAATCGGTTCTAGCTAACTGAAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACGACAAAAACGATCTAATATTGCTTGAAATTTCGCAATTCCAAAGGCAAAGACACTGAAATCGATAAATTCAAATTCTGACATATTTAACTAAGCTAAAAACATGCAAAAAACCACAAAATTGAATTTTTCAGAGCCATTTCTAGATTCTCAAACTATTTTCCCCATTATTTCCCTCTTTTAGGGGT</canonical_amplicon>
		<polymorphic_amplicon>TGAATCGGTTCTAGCTAACTGAAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACGACAAAAACGATCTAATATTGCTTGAAATTTCGCAATTCCAAAGGCAAAGACACTGAAATCGATAAATTCAAATTCTGACATATTTAACTAAGCTAAAAACATGCAAAAAACCACAAAATTGAATTTTTCAGAGYCATTTCTAGATTCTCAAACTATTTTCCCCATTATTTCCCTCTTTTAGGGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3394</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>102987</contig_pos>
        <strand>+</strand>
        <context>ACATATTYAA[C/T]TAAGCTAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAAAGGCAAAGACACTGAAATCGATAAATTCAAATTCTGACATATTTAA</left_flank>
        <right_flank>TAAGCTAAAAACATGCAAAAAACCACAAAATTGAATTTTTCAGAGCCATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGGAAGTTTTTAACAATAAATTCAATTTTCGAGCTTATTTTCACCTCAAAAGTGTCTGGAAAGTAGACCAAAAGCGTATCAGAAATCGGCTGAAAAATGCTTCCAGAACTTCCAGAAGTCGATGGAACTTGTGGAAGACTAGGTGGCGCTTCTGGAGCCGAGAAATCTGCAGATTCCGCTTCAGAATTCGGCCATTCTAGAAATTCTGAATCCACGTGGATTGTTTGATGATAGCTGACAGCCACTTTGGGAGGATCTGGGGGATCTGAAAGGTTTTTTGATCAACACAATTTTTTTCTTCAACAAACCATCTCCAATTCTTTCGATAAAGCCGAGAAGATCCATTGAATCGGTTCTAGCTAACTGAAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACGACAAAAACGATCTAATATTGCTTGAAATTTCGCAATTCCAAAGGCAAAGACACTGAAATCGATAAATTCAAATTCTGACATATTTAACTAAGCTAAAAACATGCAAAAAACCACAAAATTGAATTTTTCAGAGCCATTTCTAGATTCTCAAACTATTTTCCCCATTATTTCCCTCTTTTAGGGGTCCTGGCCGCGTGGCCTAGCGTTTTTCTAGTCCGCGACCCAGTGAATTGGCGGGGTGTTTGCCCTTTCTCGCATTTTTCTGTCTCTGACATTGATTTTTTGTTGTGAAAATCCGCAAAAATTATCTAAAAAAAATAATAATAAAAATACCGTAATTTAAAGGAGCATAAGCTAAAGAGTTTTGAGGACTTCGCAACGAAAACCGTACCCAGCGCGAAAAATCCACGTTTGAACTTTTTTTCTGTCGATTGTCAGCTGGTTTTTAGCGATTTTCAGCGATTTCCATCGAGAAAAATGGGTTTTTATCTGAAAATACCCTTTTTCGAGGTTTTTAATGCTAAGAATTCAGCAAAATTGTCGGAACATTACGAAATTTCGAGAAAAAGTAGGGAAAAATTGAAAAAA</canonical>
            <polymorphic>GGGGAAGTTTTTAACAATAAATTCAATTTTCGAGCTTATTTTCACCTCAAAAGTGTCTGGAAAGTAGACCAAAAGCGTATCAGAAATCGGCTGAAAAATGCTTCCAGAACTTCCAGAAGTCGATGGAACTTGTGGAAGACTAGGTGGCGCTTCTGGAGCCGAGAAATCTGCAGATTCCGCTTCAGAATTCGGCCATTCTAGAAATTCTGAATCCACGTGGATTGTTTGATGATAGCTGACAGCCACTTTGGGAGGATCTGGGGGATCTGAAAGGTTTTTTGATCAACACAATTTTTTTCTTCAACAAACCATCTCCAATTCTTTCGATAAAGCCGAGAAGATCCATTGAATCGGTTCTAGCTAACTGAAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACGACAAAAACGATCTAATATTGCTTGAAATTTCGCAATTCCAAAGGCAAAGACACTGAAATCGATAAATTCAAATTCTGACATATTTAAYTAAGCTAAAAACATGCAAAAAACCACAAAATTGAATTTTTCAGAGCCATTTCTAGATTCTCAAACTATTTTCCCCATTATTTCCCTCTTTTAGGGGTCCTGGCCGCGTGGCCTAGCGTTTTTCTAGTCCGCGACCCAGTGAATTGGCGGGGTGTTTGCCCTTTCTCGCATTTTTCTGTCTCTGACATTGATTTTTTGTTGTGAAAATCCGCAAAAATTATCTAAAAAAAATAATAATAAAAATACCGTAATTTAAAGGAGCATAAGCTAAAGAGTTTTGAGGACTTCGCAACGAAAACCGTACCCAGCGCGAAAAATCCACGTTTGAACTTTTTTTCTGTCGATTGTCAGCTGGTTTTTAGCGATTTTCAGCGATTTCCATCGAGAAAAATGGGTTTTTATCTGAAAATACCCTTTTTCGAGGTTTTTAATGCTAAGAATTCAGCAAAATTGTCGGAACATTACGAAATTTCGAGAAAAAGTAGGGAAAAATTGAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 433 67</canonical_bands>
                <polymorphic_bands>933 67</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTGAATCGGTTCTAGCTAAC</pcr_primer_p1>
		<pcr_primer_p2>AATAATGGGGAAAATAGTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>CATTGAATCGGTTCTAGCTAACTGAAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACGACAAAAACGATCTAATATTGCTTGAAATTTCGCAATTCCAAAGGCAAAGACACTGAAATCGATAAATTCAAATTCTGACATATTTAACTAAGCTAAAAACATGCAAAAAACCACAAAATTGAATTTTTCAGAGCCATTTCTAGATTCTCAAACTATTTTCCCCATTATT</canonical_amplicon>
		<polymorphic_amplicon>CATTGAATCGGTTCTAGCTAACTGAAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACGACAAAAACGATCTAATATTGCTTGAAATTTCGCAATTCCAAAGGCAAAGACACTGAAATCGATAAATTCAAATTCTGACATATTTAAYTAAGCTAAAAACATGCAAAAAACCACAAAATTGAATTTTTCAGAGCCATTTCTAGATTCTCAAACTATTTTCCCCATTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3395</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>102984</contig_pos>
        <strand>+</strand>
        <context>CTGACATATT[C/T]AAYTAAGCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCCAAAGGCAAAGACACTGAAATCGATAAATTCAAATTCTGACATATT</left_flank>
        <right_flank>AACTAAGCTAAAAACATGCAAAAAACCACAAAATTGAATTTTTCAGAGCC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGGGGAAGTTTTTAACAATAAATTCAATTTTCGAGCTTATTTTCACCTCAAAAGTGTCTGGAAAGTAGACCAAAAGCGTATCAGAAATCGGCTGAAAAATGCTTCCAGAACTTCCAGAAGTCGATGGAACTTGTGGAAGACTAGGTGGCGCTTCTGGAGCCGAGAAATCTGCAGATTCCGCTTCAGAATTCGGCCATTCTAGAAATTCTGAATCCACGTGGATTGTTTGATGATAGCTGACAGCCACTTTGGGAGGATCTGGGGGATCTGAAAGGTTTTTTGATCAACACAATTTTTTTCTTCAACAAACCATCTCCAATTCTTTCGATAAAGCCGAGAAGATCCATTGAATCGGTTCTAGCTAACTGAAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACGACAAAAACGATCTAATATTGCTTGAAATTTCGCAATTCCAAAGGCAAAGACACTGAAATCGATAAATTCAAATTCTGACATATTTAACTAAGCTAAAAACATGCAAAAAACCACAAAATTGAATTTTTCAGAGCCATTTCTAGATTCTCAAACTATTTTCCCCATTATTTCCCTCTTTTAGGGGTCCTGGCCGCGTGGCCTAGCGTTTTTCTAGTCCGCGACCCAGTGAATTGGCGGGGTGTTTGCCCTTTCTCGCATTTTTCTGTCTCTGACATTGATTTTTTGTTGTGAAAATCCGCAAAAATTATCTAAAAAAAATAATAATAAAAATACCGTAATTTAAAGGAGCATAAGCTAAAGAGTTTTGAGGACTTCGCAACGAAAACCGTACCCAGCGCGAAAAATCCACGTTTGAACTTTTTTTCTGTCGATTGTCAGCTGGTTTTTAGCGATTTTCAGCGATTTCCATCGAGAAAAATGGGTTTTTATCTGAAAATACCCTTTTTCGAGGTTTTTAATGCTAAGAATTCAGCAAAATTGTCGGAACATTACGAAATTTCGAGAAAAAGTAGGGAAAAATTGAAA</canonical>
            <polymorphic>TCAGGGGAAGTTTTTAACAATAAATTCAATTTTCGAGCTTATTTTCACCTCAAAAGTGTCTGGAAAGTAGACCAAAAGCGTATCAGAAATCGGCTGAAAAATGCTTCCAGAACTTCCAGAAGTCGATGGAACTTGTGGAAGACTAGGTGGCGCTTCTGGAGCCGAGAAATCTGCAGATTCCGCTTCAGAATTCGGCCATTCTAGAAATTCTGAATCCACGTGGATTGTTTGATGATAGCTGACAGCCACTTTGGGAGGATCTGGGGGATCTGAAAGGTTTTTTGATCAACACAATTTTTTTCTTCAACAAACCATCTCCAATTCTTTCGATAAAGCCGAGAAGATCCATTGAATCGGTTCTAGCTAACTGAAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACGACAAAAACGATCTAATATTGCTTGAAATTTCGCAATTCCAAAGGCAAAGACACTGAAATCGATAAATTCAAATTCTGACATATTYAACTAAGCTAAAAACATGCAAAAAACCACAAAATTGAATTTTTCAGAGCCATTTCTAGATTCTCAAACTATTTTCCCCATTATTTCCCTCTTTTAGGGGTCCTGGCCGCGTGGCCTAGCGTTTTTCTAGTCCGCGACCCAGTGAATTGGCGGGGTGTTTGCCCTTTCTCGCATTTTTCTGTCTCTGACATTGATTTTTTGTTGTGAAAATCCGCAAAAATTATCTAAAAAAAATAATAATAAAAATACCGTAATTTAAAGGAGCATAAGCTAAAGAGTTTTGAGGACTTCGCAACGAAAACCGTACCCAGCGCGAAAAATCCACGTTTGAACTTTTTTTCTGTCGATTGTCAGCTGGTTTTTAGCGATTTTCAGCGATTTCCATCGAGAAAAATGGGTTTTTATCTGAAAATACCCTTTTTCGAGGTTTTTAATGCTAAGAATTCAGCAAAATTGTCGGAACATTACGAAATTTCGAGAAAAAGTAGGGAAAAATTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>485 256 175 70 14</canonical_bands>
                <polymorphic_bands>741 175 70 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTGAATCGGTTCTAGCTAAC</pcr_primer_p1>
		<pcr_primer_p2>AATAATGGGGAAAATAGTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>CATTGAATCGGTTCTAGCTAACTGAAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACGACAAAAACGATCTAATATTGCTTGAAATTTCGCAATTCCAAAGGCAAAGACACTGAAATCGATAAATTCAAATTCTGACATATTTAACTAAGCTAAAAACATGCAAAAAACCACAAAATTGAATTTTTCAGAGCCATTTCTAGATTCTCAAACTATTTTCCCCATTATT</canonical_amplicon>
		<polymorphic_amplicon>CATTGAATCGGTTCTAGCTAACTGAAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACGACAAAAACGATCTAATATTGCTTGAAATTTCGCAATTCCAAAGGCAAAGACACTGAAATCGATAAATTCAAATTCTGACATATTYAACTAAGCTAAAAACATGCAAAAAACCACAAAATTGAATTTTTCAGAGCCATTTCTAGATTCTCAAACTATTTTCCCCATTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3396</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>102954</contig_pos>
        <strand>+</strand>
        <context>CAAAGACACT[A/G]AAATCGATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACGATCTAATATTGCTTGAAATTTCGCAATTCCAAAGGCAAAGACACT</left_flank>
        <right_flank>AAATCGATAAATTCAAATTCTGACATATTTAACTAAGCTAAAAACATGCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGAATCAAATTTTTAGACTTCAAACTTTTCAGGGGAAGTTTTTAACAATAAATTCAATTTTCGAGCTTATTTTCACCTCAAAAGTGTCTGGAAAGTAGACCAAAAGCGTATCAGAAATCGGCTGAAAAATGCTTCCAGAACTTCCAGAAGTCGATGGAACTTGTGGAAGACTAGGTGGCGCTTCTGGAGCCGAGAAATCTGCAGATTCCGCTTCAGAATTCGGCCATTCTAGAAATTCTGAATCCACGTGGATTGTTTGATGATAGCTGACAGCCACTTTGGGAGGATCTGGGGGATCTGAAAGGTTTTTTGATCAACACAATTTTTTTCTTCAACAAACCATCTCCAATTCTTTCGATAAAGCCGAGAAGATCCATTGAATCGGTTCTAGCTAACTGAAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACGACAAAAACGATCTAATATTGCTTGAAATTTCGCAATTCCAAAGGCAAAGACACTGAAATCGATAAATTCAAATTCTGACATATTTAACTAAGCTAAAAACATGCAAAAAACCACAAAATTGAATTTTTCAGAGCCATTTCTAGATTCTCAAACTATTTTCCCCATTATTTCCCTCTTTTAGGGGTCCTGGCCGCGTGGCCTAGCGTTTTTCTAGTCCGCGACCCAGTGAATTGGCGGGGTGTTTGCCCTTTCTCGCATTTTTCTGTCTCTGACATTGATTTTTTGTTGTGAAAATCCGCAAAAATTATCTAAAAAAAATAATAATAAAAATACCGTAATTTAAAGGAGCATAAGCTAAAGAGTTTTGAGGACTTCGCAACGAAAACCGTACCCAGCGCGAAAAATCCACGTTTGAACTTTTTTTCTGTCGATTGTCAGCTGGTTTTTAGCGATTTTCAGCGATTTCCATCGAGAAAAATGGGTTTTTATCTGAAAATACCCTTTTTCGAGGTTTTTAATGCTAAGAATTCAGCAAAATTGTCGGAACATTACGAA</canonical>
            <polymorphic>TCAGAATCAAATTTTTAGACTTCAAACTTTTCAGGGGAAGTTTTTAACAATAAATTCAATTTTCGAGCTTATTTTCACCTCAAAAGTGTCTGGAAAGTAGACCAAAAGCGTATCAGAAATCGGCTGAAAAATGCTTCCAGAACTTCCAGAAGTCGATGGAACTTGTGGAAGACTAGGTGGCGCTTCTGGAGCCGAGAAATCTGCAGATTCCGCTTCAGAATTCGGCCATTCTAGAAATTCTGAATCCACGTGGATTGTTTGATGATAGCTGACAGCCACTTTGGGAGGATCTGGGGGATCTGAAAGGTTTTTTGATCAACACAATTTTTTTCTTCAACAAACCATCTCCAATTCTTTCGATAAAGCCGAGAAGATCCATTGAATCGGTTCTAGCTAACTGAAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACGACAAAAACGATCTAATATTGCTTGAAATTTCGCAATTCCAAAGGCAAAGACACTRAAATCGATAAATTCAAATTCTGACATATTTAACTAAGCTAAAAACATGCAAAAAACCACAAAATTGAATTTTTCAGAGCCATTTCTAGATTCTCAAACTATTTTCCCCATTATTTCCCTCTTTTAGGGGTCCTGGCCGCGTGGCCTAGCGTTTTTCTAGTCCGCGACCCAGTGAATTGGCGGGGTGTTTGCCCTTTCTCGCATTTTTCTGTCTCTGACATTGATTTTTTGTTGTGAAAATCCGCAAAAATTATCTAAAAAAAATAATAATAAAAATACCGTAATTTAAAGGAGCATAAGCTAAAGAGTTTTGAGGACTTCGCAACGAAAACCGTACCCAGCGCGAAAAATCCACGTTTGAACTTTTTTTCTGTCGATTGTCAGCTGGTTTTTAGCGATTTTCAGCGATTTCCATCGAGAAAAATGGGTTTTTATCTGAAAATACCCTTTTTCGAGGTTTTTAATGCTAAGAATTCAGCAAAATTGTCGGAACATTACGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTGAATCGGTTCTAGCTAAC</pcr_primer_p1>
		<pcr_primer_p2>AATAATGGGGAAAATAGTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>CATTGAATCGGTTCTAGCTAACTGAAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACGACAAAAACGATCTAATATTGCTTGAAATTTCGCAATTCCAAAGGCAAAGACACTGAAATCGATAAATTCAAATTCTGACATATTTAACTAAGCTAAAAACATGCAAAAAACCACAAAATTGAATTTTTCAGAGCCATTTCTAGATTCTCAAACTATTTTCCCCATTATT</canonical_amplicon>
		<polymorphic_amplicon>CATTGAATCGGTTCTAGCTAACTGAAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACGACAAAAACGATCTAATATTGCTTGAAATTTCGCAATTCCAAAGGCAAAGACACTRAAATCGATAAATTCAAATTCTGACATATTTAACTAAGCTAAAAACATGCAAAAAACCACAAAATTGAATTTTTCAGAGCCATTTCTAGATTCTCAAACTATTTTCCCCATTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3397</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>102899</contig_pos>
        <strand></strand>
        <context>TATATAGGAC[G/A]ACAAAAACGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAACTGAAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGAC</left_flank>
        <right_flank>ACAAAAACGATCTAATATTGCTTGAAATTTCGCAATTCCAAAGGCAAAGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAAAAAAATTTCGAAAAAAAAAACTTTTTTTTGACCAAAAATTCTGAAAATTTTCAGAATCAAATTTTTAGACTTCAAACTTTTCAGGGGAAGTTTTTAACAATAAATTCAATTTTCGAGCTTATTTTCACCTCAAAAGTGTCTGGAAAGTAGACCAAAAGCGTATCAGAAATCGGCTGAAAAATGCTTCCAGAACTTCCAGAAGTCGATGGAACTTGTGGAAGACTAGGTGGCGCTTCTGGAGCCGAGAAATCTGCAGATTCCGCTTCAGAATTCGGCCATTCTAGAAATTCTGAATCCACGTGGATTGTTTGATGATAGCTGACAGCCACTTTGGGAGGATCTGGGGGATCTGAAAGGTTTTTTGATCAACACAATTTTTTTCTTCAACAAACCATCTCCAATTCTTTCGATAAAGCCGAGAAGATCCATTGAATCGGTTCTAGCTAACTGAAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACGACAAAAACGATCTAATATTGCTTGAAATTTCGCAATTCCAAAGGCAAAGACACTGAAATCGATAAATTCAAATTCTGACATATTTAACTAAGCTAAAAACATGCAAAAAACCACAAAATTGAATTTTTCAGAGCCATTTCTAGATTCTCAAACTATTTTCCCCATTATTTCCCTCTTTTAGGGGTCCTGGCCGCGTGGCCTAGCGTTTTTCTAGTCCGCGACCCAGTGAATTGGCGGGGTGTTTGCCCTTTCTCGCATTTTTCTGTCTCTGACATTGATTTTTTGTTGTGAAAATCCGCAAAAATTATCTAAAAAAAATAATAATAAAAATACCGTAATTTAAAGGAGCATAAGCTAAAGAGTTTTGAGGACTTCGCAACGAAAACCGTACCCAGCGCGAAAAATCCACGTTTGAACTTTTTTTCTGTCGATTGTCAGCTGGTTTTTAGCGATTTTCAGCGATTTCCATCGAGAAAAATGGGTTTTTATCTGAAAATACC</canonical>
            <polymorphic>TTTAAAAAAATTTCGAAAAAAAAAACTTTTTTTTGACCAAAAATTCTGAAAATTTTCAGAATCAAATTTTTAGACTTCAAACTTTTCAGGGGAAGTTTTTAACAATAAATTCAATTTTCGAGCTTATTTTCACCTCAAAAGTGTCTGGAAAGTAGACCAAAAGCGTATCAGAAATCGGCTGAAAAATGCTTCCAGAACTTCCAGAAGTCGATGGAACTTGTGGAAGACTAGGTGGCGCTTCTGGAGCCGAGAAATCTGCAGATTCCGCTTCAGAATTCGGCCATTCTAGAAATTCTGAATCCACGTGGATTGTTTGATGATAGCTGACAGCCACTTTGGGAGGATCTGGGGGATCTGAAAGGTTTTTTGATCAACACAATTTTTTTCTTCAACAAACCATCTCCAATTCTTTCGATAAAGCCGAGAAGATCCATTGAATCGGTTCTAGCTAACTGAAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACRACAAAAACGATCTAATATTGCTTGAAATTTCGCAATTCCAAAGGCAAAGACACTGAAATCGATAAATTCAAATTCTGACATATTTAACTAAGCTAAAAACATGCAAAAAACCACAAAATTGAATTTTTCAGAGCCATTTCTAGATTCTCAAACTATTTTCCCCATTATTTCCCTCTTTTAGGGGTCCTGGCCGCGTGGCCTAGCGTTTTTCTAGTCCGCGACCCAGTGAATTGGCGGGGTGTTTGCCCTTTCTCGCATTTTTCTGTCTCTGACATTGATTTTTTGTTGTGAAAATCCGCAAAAATTATCTAAAAAAAATAATAATAAAAATACCGTAATTTAAAGGAGCATAAGCTAAAGAGTTTTGAGGACTTCGCAACGAAAACCGTACCCAGCGCGAAAAATCCACGTTTGAACTTTTTTTCTGTCGATTGTCAGCTGGTTTTTAGCGATTTTCAGCGATTTCCATCGAGAAAAATGGGTTTTTATCTGAAAATACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTGAATCGGTTCTAGCTAAC</pcr_primer_p1>
		<pcr_primer_p2>AATAATGGGGAAAATAGTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>CATTGAATCGGTTCTAGCTAACTGAAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACGACAAAAACGATCTAATATTGCTTGAAATTTCGCAATTCCAAAGGCAAAGACACTGAAATCGATAAATTCAAATTCTGACATATTTAACTAAGCTAAAAACATGCAAAAAACCACAAAATTGAATTTTTCAGAGCCATTTCTAGATTCTCAAACTATTTTCCCCATTATT</canonical_amplicon>
		<polymorphic_amplicon>CATTGAATCGGTTCTAGCTAACTGAAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACRACAAAAACGATCTAATATTGCTTGAAATTTCGCAATTCCAAAGGCAAAGACACTGAAATCGATAAATTCAAATTCTGACATATTTAACTAAGCTAAAAACATGCAAAAAACCACAAAATTGAATTTTTCAGAGCCATTTCTAGATTCTCAAACTATTTTCCCCATTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3398</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>102820</contig_pos>
        <strand>+</strand>
        <context>TTCGATAAAG[C/T]CGAGAAGATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAACACAATTTTTTTCTTCAACAAACCATCTCCAATTCTTTCGATAAAG</left_flank>
        <right_flank>CGAGAAGATCCATTGAATCGGTTCTAGCTAACTGAAAAAAAATTTTCTTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCATGCCAAAAATTTGTTTTTAGATGGAAAAAATCACATTTCAAATGTATACTTTCGGCAAATTTTGCAAAAAAATTTTTAAAAAAATTTCGAAAAAAAAAACTTTTTTTTGACCAAAAATTCTGAAAATTTTCAGAATCAAATTTTTAGACTTCAAACTTTTCAGGGGAAGTTTTTAACAATAAATTCAATTTTCGAGCTTATTTTCACCTCAAAAGTGTCTGGAAAGTAGACCAAAAGCGTATCAGAAATCGGCTGAAAAATGCTTCCAGAACTTCCAGAAGTCGATGGAACTTGTGGAAGACTAGGTGGCGCTTCTGGAGCCGAGAAATCTGCAGATTCCGCTTCAGAATTCGGCCATTCTAGAAATTCTGAATCCACGTGGATTGTTTGATGATAGCTGACAGCCACTTTGGGAGGATCTGGGGGATCTGAAAGGTTTTTTGATCAACACAATTTTTTTCTTCAACAAACCATCTCCAATTCTTTCGATAAAGCCGAGAAGATCCATTGAATCGGTTCTAGCTAACTGAAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACGACAAAAACGATCTAATATTGCTTGAAATTTCGCAATTCCAAAGGCAAAGACACTGAAATCGATAAATTCAAATTCTGACATATTTAACTAAGCTAAAAACATGCAAAAAACCACAAAATTGAATTTTTCAGAGCCATTTCTAGATTCTCAAACTATTTTCCCCATTATTTCCCTCTTTTAGGGGTCCTGGCCGCGTGGCCTAGCGTTTTTCTAGTCCGCGACCCAGTGAATTGGCGGGGTGTTTGCCCTTTCTCGCATTTTTCTGTCTCTGACATTGATTTTTTGTTGTGAAAATCCGCAAAAATTATCTAAAAAAAATAATAATAAAAATACCGTAATTTAAAGGAGCATAAGCTAAAGAGTTTTGAGGACTTCGCAACGAAAACCGTACCCAGCGCGAAAAATCCACGTTTGAACTTTT</canonical>
            <polymorphic>TTTCATGCCAAAAATTTGTTTTTAGATGGAAAAAATCACATTTCAAATGTATACTTTCGGCAAATTTTGCAAAAAAATTTTTAAAAAAATTTCGAAAAAAAAAACTTTTTTTTGACCAAAAATTCTGAAAATTTTCAGAATCAAATTTTTAGACTTCAAACTTTTCAGGGGAAGTTTTTAACAATAAATTCAATTTTCGAGCTTATTTTCACCTCAAAAGTGTCTGGAAAGTAGACCAAAAGCGTATCAGAAATCGGCTGAAAAATGCTTCCAGAACTTCCAGAAGTCGATGGAACTTGTGGAAGACTAGGTGGCGCTTCTGGAGCCGAGAAATCTGCAGATTCCGCTTCAGAATTCGGCCATTCTAGAAATTCTGAATCCACGTGGATTGTTTGATGATAGCTGACAGCCACTTTGGGAGGATCTGGGGGATCTGAAAGGTTTTTTGATCAACACAATTTTTTTCTTCAACAAACCATCTCCAATTCTTTCGATAAAGYCGAGAAGATCCATTGAATCGGTTCTAGCTAACTGAAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACGACAAAAACGATCTAATATTGCTTGAAATTTCGCAATTCCAAAGGCAAAGACACTGAAATCGATAAATTCAAATTCTGACATATTTAACTAAGCTAAAAACATGCAAAAAACCACAAAATTGAATTTTTCAGAGCCATTTCTAGATTCTCAAACTATTTTCCCCATTATTTCCCTCTTTTAGGGGTCCTGGCCGCGTGGCCTAGCGTTTTTCTAGTCCGCGACCCAGTGAATTGGCGGGGTGTTTGCCCTTTCTCGCATTTTTCTGTCTCTGACATTGATTTTTTGTTGTGAAAATCCGCAAAAATTATCTAAAAAAAATAATAATAAAAATACCGTAATTTAAAGGAGCATAAGCTAAAGAGTTTTGAGGACTTCGCAACGAAAACCGTACCCAGCGCGAAAAATCCACGTTTGAACTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>201 156 144 90 68 67 57 56 43 41 34 28 8 7</canonical_bands>
                <polymorphic_bands>201 156 144 118 68 67 57 56 43 41 34 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTGTTTGATGATAGCTGAC</pcr_primer_p1>
		<pcr_primer_p2>TTCAAGCAATATTAGATCGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>220</pcr_amplicon_size>
		<canonical_amplicon>GGATTGTTTGATGATAGCTGACAGCCACTTTGGGAGGATCTGGGGGATCTGAAAGGTTTTTTGATCAACACAATTTTTTTCTTCAACAAACCATCTCCAATTCTTTCGATAAAGCCGAGAAGATCCATTGAATCGGTTCTAGCTAACTGAAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACGACAAAAACGATCTAATATTGCTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GGATTGTTTGATGATAGCTGACAGCCACTTTGGGAGGATCTGGGGGATCTGAAAGGTTTTTTGATCAACACAATTTTTTTCTTCAACAAACCATCTCCAATTCTTTCGATAAAGYCGAGAAGATCCATTGAATCGGTTCTAGCTAACTGAAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACGACAAAAACGATCTAATATTGCTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3399</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>102702</contig_pos>
        <strand>+</strand>
        <context>TTCTGAATCC[A/G]CGTGGATTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCTGCAGATTCCGCTTCAGAATTCGGCCATTCTAGAAATTCTGAATCC</left_flank>
        <right_flank>CGTGGATTGTTTGATGATAGCTGACAGCCACTTTGGGAGGATCTGGGGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCGAATAATTCGAAACCGAGTAGCTCGATCAGTTCGCTTTGGATATCGTTGTCGGAACGCGTCGATGACAGCATTTCCAGCAAATTTTGGGTTATTGTCTGAAATTTTTTGGTCAATTTCATGCCAAAAATTTGTTTTTAGATGGAAAAAATCACATTTCAAATGTATACTTTCGGCAAATTTTGCAAAAAAATTTTTAAAAAAATTTCGAAAAAAAAAACTTTTTTTTGACCAAAAATTCTGAAAATTTTCAGAATCAAATTTTTAGACTTCAAACTTTTCAGGGGAAGTTTTTAACAATAAATTCAATTTTCGAGCTTATTTTCACCTCAAAAGTGTCTGGAAAGTAGACCAAAAGCGTATCAGAAATCGGCTGAAAAATGCTTCCAGAACTTCCAGAAGTCGATGGAACTTGTGGAAGACTAGGTGGCGCTTCTGGAGCCGAGAAATCTGCAGATTCCGCTTCAGAATTCGGCCATTCTAGAAATTCTGAATCCACGTGGATTGTTTGATGATAGCTGACAGCCACTTTGGGAGGATCTGGGGGATCTGAAAGGTTTTTTGATCAACACAATTTTTTTCTTCAACAAACCATCTCCAATTCTTTCGATAAAGCCGAGAAGATCCATTGAATCGGTTCTAGCTAACTGAAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACGACAAAAACGATCTAATATTGCTTGAAATTTCGCAATTCCAAAGGCAAAGACACTGAAATCGATAAATTCAAATTCTGACATATTTAACTAAGCTAAAAACATGCAAAAAACCACAAAATTGAATTTTTCAGAGCCATTTCTAGATTCTCAAACTATTTTCCCCATTATTTCCCTCTTTTAGGGGTCCTGGCCGCGTGGCCTAGCGTTTTTCTAGTCCGCGACCCAGTGAATTGGCGGGGTGTTTGCCCTTTCTCGCATTTTTCTGTCTCTGACATTGATTTTTTGTTGTGAAAATCCGCAAAA</canonical>
            <polymorphic>ATTCGAATAATTCGAAACCGAGTAGCTCGATCAGTTCGCTTTGGATATCGTTGTCGGAACGCGTCGATGACAGCATTTCCAGCAAATTTTGGGTTATTGTCTGAAATTTTTTGGTCAATTTCATGCCAAAAATTTGTTTTTAGATGGAAAAAATCACATTTCAAATGTATACTTTCGGCAAATTTTGCAAAAAAATTTTTAAAAAAATTTCGAAAAAAAAAACTTTTTTTTGACCAAAAATTCTGAAAATTTTCAGAATCAAATTTTTAGACTTCAAACTTTTCAGGGGAAGTTTTTAACAATAAATTCAATTTTCGAGCTTATTTTCACCTCAAAAGTGTCTGGAAAGTAGACCAAAAGCGTATCAGAAATCGGCTGAAAAATGCTTCCAGAACTTCCAGAAGTCGATGGAACTTGTGGAAGACTAGGTGGCGCTTCTGGAGCCGAGAAATCTGCAGATTCCGCTTCAGAATTCGGCCATTCTAGAAATTCTGAATCCRCGTGGATTGTTTGATGATAGCTGACAGCCACTTTGGGAGGATCTGGGGGATCTGAAAGGTTTTTTGATCAACACAATTTTTTTCTTCAACAAACCATCTCCAATTCTTTCGATAAAGCCGAGAAGATCCATTGAATCGGTTCTAGCTAACTGAAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACGACAAAAACGATCTAATATTGCTTGAAATTTCGCAATTCCAAAGGCAAAGACACTGAAATCGATAAATTCAAATTCTGACATATTTAACTAAGCTAAAAACATGCAAAAAACCACAAAATTGAATTTTTCAGAGCCATTTCTAGATTCTCAAACTATTTTCCCCATTATTTCCCTCTTTTAGGGGTCCTGGCCGCGTGGCCTAGCGTTTTTCTAGTCCGCGACCCAGTGAATTGGCGGGGTGTTTGCCCTTTCTCGCATTTTTCTGTCTCTGACATTGATTTTTTGTTGTGAAAATCCGCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACGTG</site>
                <isoschizomers>
                    <enzyme>AcvI</enzyme>
                    <enzyme>BbrPI</enzyme>
                    <enzyme>Eco72I</enzyme>
                    <enzyme>PmaCI</enzyme>
                    <enzyme>PmlI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>176 173 156 84 79 69 61 49 43 31 26 13 13 12 11 4</canonical_bands>
                <polymorphic_bands>176 173 156 84 79 73 61 49 43 31 26 13 13 12 11</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGACCAAAAGCGTATCAGAA</pcr_primer_p1>
		<pcr_primer_p2>GAGATGGTTTGTTGAAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAGACCAAAAGCGTATCAGAAATCGGCTGAAAAATGCTTCCAGAACTTCCAGAAGTCGATGGAACTTGTGGAAGACTAGGTGGCGCTTCTGGAGCCGAGAAATCTGCAGATTCCGCTTCAGAATTCGGCCATTCTAGAAATTCTGAATCCACGTGGATTGTTTGATGATAGCTGACAGCCACTTTGGGAGGATCTGGGGGATCTGAAAGGTTTTTTGATCAACACAATTTTTTTCTTCAACAAACCATCTC</canonical_amplicon>
		<polymorphic_amplicon>TAGACCAAAAGCGTATCAGAAATCGGCTGAAAAATGCTTCCAGAACTTCCAGAAGTCGATGGAACTTGTGGAAGACTAGGTGGCGCTTCTGGAGCCGAGAAATCTGCAGATTCCGCTTCAGAATTCGGCCATTCTAGAAATTCTGAATCCRCGTGGATTGTTTGATGATAGCTGACAGCCACTTTGGGAGGATCTGGGGGATCTGAAAGGTTTTTTGATCAACACAATTTTTTTCTTCAACAAACCATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3400</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>102655</contig_pos>
        <strand>+</strand>
        <context>GCCGAGAAAT[C/T]TGCAGATTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTCGATGGAACTTGTGGAAGACTAGGTGGCGCTTCTGGAGCCGAGAAAT</left_flank>
        <right_flank>TGCAGATTCCGCTTCAGAATTCGGCCATTCTAGAAATTCTGAATCCACGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTCGTAGACAATTTTGTTTCGTTTCTCCAAAATATCGCCCGCCAATTCGAATAATTCGAAACCGAGTAGCTCGATCAGTTCGCTTTGGATATCGTTGTCGGAACGCGTCGATGACAGCATTTCCAGCAAATTTTGGGTTATTGTCTGAAATTTTTTGGTCAATTTCATGCCAAAAATTTGTTTTTAGATGGAAAAAATCACATTTCAAATGTATACTTTCGGCAAATTTTGCAAAAAAATTTTTAAAAAAATTTCGAAAAAAAAAACTTTTTTTTGACCAAAAATTCTGAAAATTTTCAGAATCAAATTTTTAGACTTCAAACTTTTCAGGGGAAGTTTTTAACAATAAATTCAATTTTCGAGCTTATTTTCACCTCAAAAGTGTCTGGAAAGTAGACCAAAAGCGTATCAGAAATCGGCTGAAAAATGCTTCCAGAACTTCCAGAAGTCGATGGAACTTGTGGAAGACTAGGTGGCGCTTCTGGAGCCGAGAAATCTGCAGATTCCGCTTCAGAATTCGGCCATTCTAGAAATTCTGAATCCACGTGGATTGTTTGATGATAGCTGACAGCCACTTTGGGAGGATCTGGGGGATCTGAAAGGTTTTTTGATCAACACAATTTTTTTCTTCAACAAACCATCTCCAATTCTTTCGATAAAGCCGAGAAGATCCATTGAATCGGTTCTAGCTAACTGAAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACGACAAAAACGATCTAATATTGCTTGAAATTTCGCAATTCCAAAGGCAAAGACACTGAAATCGATAAATTCAAATTCTGACATATTTAACTAAGCTAAAAACATGCAAAAAACCACAAAATTGAATTTTTCAGAGCCATTTCTAGATTCTCAAACTATTTTCCCCATTATTTCCCTCTTTTAGGGGTCCTGGCCGCGTGGCCTAGCGTTTTTCTAGTCCGCGACCCAGTGAATTGGCGGGGTGTTTGCCCTTTCTCGC</canonical>
            <polymorphic>GATTTCGTAGACAATTTTGTTTCGTTTCTCCAAAATATCGCCCGCCAATTCGAATAATTCGAAACCGAGTAGCTCGATCAGTTCGCTTTGGATATCGTTGTCGGAACGCGTCGATGACAGCATTTCCAGCAAATTTTGGGTTATTGTCTGAAATTTTTTGGTCAATTTCATGCCAAAAATTTGTTTTTAGATGGAAAAAATCACATTTCAAATGTATACTTTCGGCAAATTTTGCAAAAAAATTTTTAAAAAAATTTCGAAAAAAAAAACTTTTTTTTGACCAAAAATTCTGAAAATTTTCAGAATCAAATTTTTAGACTTCAAACTTTTCAGGGGAAGTTTTTAACAATAAATTCAATTTTCGAGCTTATTTTCACCTCAAAAGTGTCTGGAAAGTAGACCAAAAGCGTATCAGAAATCGGCTGAAAAATGCTTCCAGAACTTCCAGAAGTCGATGGAACTTGTGGAAGACTAGGTGGCGCTTCTGGAGCCGAGAAATYTGCAGATTCCGCTTCAGAATTCGGCCATTCTAGAAATTCTGAATCCACGTGGATTGTTTGATGATAGCTGACAGCCACTTTGGGAGGATCTGGGGGATCTGAAAGGTTTTTTGATCAACACAATTTTTTTCTTCAACAAACCATCTCCAATTCTTTCGATAAAGCCGAGAAGATCCATTGAATCGGTTCTAGCTAACTGAAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACGACAAAAACGATCTAATATTGCTTGAAATTTCGCAATTCCAAAGGCAAAGACACTGAAATCGATAAATTCAAATTCTGACATATTTAACTAAGCTAAAAACATGCAAAAAACCACAAAATTGAATTTTTCAGAGCCATTTCTAGATTCTCAAACTATTTTCCCCATTATTTCCCTCTTTTAGGGGTCCTGGCCGCGTGGCCTAGCGTTTTTCTAGTCCGCGACCCAGTGAATTGGCGGGGTGTTTGCCCTTTCTCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTGCAG</site>
                <isoschizomers>
                    <enzyme>BloHII</enzyme>
                    <enzyme>BstMAI</enzyme>
                    <enzyme>PstI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTTTTCAGGGGAAGTTTTTA</pcr_primer_p1>
		<pcr_primer_p2>TGTCAGCTATCATCAAACAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACTTTTCAGGGGAAGTTTTTAACAATAAATTCAATTTTCGAGCTTATTTTCACCTCAAAAGTGTCTGGAAAGTAGACCAAAAGCGTATCAGAAATCGGCTGAAAAATGCTTCCAGAACTTCCAGAAGTCGATGGAACTTGTGGAAGACTAGGTGGCGCTTCTGGAGCCGAGAAATCTGCAGATTCCGCTTCAGAATTCGGCCATTCTAGAAATTCTGAATCCACGTGGATTGTTTGATGATAGCTGACA</canonical_amplicon>
		<polymorphic_amplicon>AACTTTTCAGGGGAAGTTTTTAACAATAAATTCAATTTTCGAGCTTATTTTCACCTCAAAAGTGTCTGGAAAGTAGACCAAAAGCGTATCAGAAATCGGCTGAAAAATGCTTCCAGAACTTCCAGAAGTCGATGGAACTTGTGGAAGACTAGGTGGCGCTTCTGGAGCCGAGAAATYTGCAGATTCCGCTTCAGAATTCGGCCATTCTAGAAATTCTGAATCCACGTGGATTGTTTGATGATAGCTGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3401</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>201694</contig_pos>
        <strand>+</strand>
        <context>AGATCCGATT[G/T]TCTACTAGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTTCGAAACCCCAGTGACTCTGCCACCAGTAAGTTGGATAGATCCGATT</left_flank>
        <right_flank>TCTACTAGAGAATTTGAGAAAAAATTTGAATAAAAATTTTTGAGAAGGGC</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAATTCGCATGTTTTCAGCCAATCACCAGTTCTGCCGCACCAACCACAGTTACTCCAATCGACTTGGTAAACAGTTTAATTTTTGAAAAATTATACTTTTTCAATTTTTCCAGCCACCAATCTACGAGCAAACTCCAGTCGATTTGCCACCAGTGAGTTTTTTTCCGACTTTTTTGAATTTGGAATCTTTTGAAAATTTTGCAAAAAAATTTCTGGAATCTCGAAAATTTTCGACGTTCTCAATTTCCTGGATTTGGAATTCCAAAACATTCGTAGTTCTTGCAACGTTTTGAATTCTGAAATTTCGGCATTTTGAAAACTTTTGGAAGCTGTTATTTTTGAAGTTTCAGGATTTTTGAATTTCACCTAAATTTTCCTGAAATTTCAGAAATTCCCGAATTTCCGAAATATTGAACTTTTGTGATAAAGAAAGTTTTTTTTTCAGATCTTCGAAACCCCAGTGACTCTGCCACCAGTAAGTTGGATAGATCCGATTGTCTACTAGAGAATTTGAGAAAAAATTTGAATAAAAATTTTTGAGAAGGGCAAAACGAAAATTACATTTTTTTAGAATTTGAAATTTTCAGATTTTGAATGACACCTCAGGAAAATCGTCATCGTCTTCTTCTTCTTCCTCATCATCCTCTTCTGAGGAACACAAGGTAGGACATCTGGGAATACAGACACACAGATTTTTTCTAGAATTTTCGAAGTTCCGAAAAATCCAAGTTCTCTGGACTGCTAAAAATTTCGGAACTTCCAATGTATCCTGAATTTCTGAATTTCTAAATTAATTTAACAATTTCATTAATTTCCAATTTTCAGAATCCTCAAAAACCTGGACATGGACCAAAGCCAAAAAAGCATGTCAGAAAAATTAAAATGGAAGATTTGGTGCCAAAGAAAAAATTGAAAGTTCATCATCAACATCGTTCGGATTTTGAGCAAAAAATGAGAAATTTGAAAAAAAATGAGCAATACAAAAAATTTGAAAAGA</canonical>
            <polymorphic>AAAAAATTCGCATGTTTTCAGCCAATCACCAGTTCTGCCGCACCAACCACAGTTACTCCAATCGACTTGGTAAACAGTTTAATTTTTGAAAAATTATACTTTTTCAATTTTTCCAGCCACCAATCTACGAGCAAACTCCAGTCGATTTGCCACCAGTGAGTTTTTTTCCGACTTTTTTGAATTTGGAATCTTTTGAAAATTTTGCAAAAAAATTTCTGGAATCTCGAAAATTTTCGACGTTCTCAATTTCCTGGATTTGGAATTCCAAAACATTCGTAGTTCTTGCAACGTTTTGAATTCTGAAATTTCGGCATTTTGAAAACTTTTGGAAGCTGTTATTTTTGAAGTTTCAGGATTTTTGAATTTCACCTAAATTTTCCTGAAATTTCAGAAATTCCCGAATTTCCGAAATATTGAACTTTTGTGATAAAGAAAGTTTTTTTTTCAGATCTTCGAAACCCCAGTGACTCTGCCACCAGTAAGTTGGATAGATCCGATTKTCTACTAGAGAATTTGAGAAAAAATTTGAATAAAAATTTTTGAGAAGGGCAAAACGAAAATTACATTTTTTTAGAATTTGAAATTTTCAGATTTTGAATGACACCTCAGGAAAATCGTCATCGTCTTCTTCTTCTTCCTCATCATCCTCTTCTGAGGAACACAAGGTAGGACATCTGGGAATACAGACACACAGATTTTTTCTAGAATTTTCGAAGTTCCGAAAAATCCAAGTTCTCTGGACTGCTAAAAATTTCGGAACTTCCAATGTATCCTGAATTTCTGAATTTCTAAATTAATTTAACAATTTCATTAATTTCCAATTTTCAGAATCCTCAAAAACCTGGACATGGACCAAAGCCAAAAAAGCATGTCAGAAAAATTAAAATGGAAGATTTGGTGCCAAAGAAAAAATTGAAAGTTCATCATCAACATCGTTCGGATTTTGAGCAAAAAATGAGAAATTTGAAAAAAAATGAGCAATACAAAAAATTTGAAAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 430 72</canonical_bands>
                <polymorphic_bands>928 72</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCGAAATATTGAACTTTTGT</pcr_primer_p1>
		<pcr_primer_p2>ATGATGAGGAAGAAGAAGAAGAC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTCCGAAATATTGAACTTTTGTGATAAAGAAAGTTTTTTTTTCAGATCTTCGAAACCCCAGTGACTCTGCCACCAGTAAGTTGGATAGATCCGATTGTCTACTAGAGAATTTGAGAAAAAATTTGAATAAAAATTTTTGAGAAGGGCAAAACGAAAATTACATTTTTTTAGAATTTGAAATTTTCAGATTTTGAATGACACCTCAGGAAAATCGTCATCGTCTTCTTCTTCTTCCTCATCAT</canonical_amplicon>
		<polymorphic_amplicon>TTCCGAAATATTGAACTTTTGTGATAAAGAAAGTTTTTTTTTCAGATCTTCGAAACCCCAGTGACTCTGCCACCAGTAAGTTGGATAGATCCGATTKTCTACTAGAGAATTTGAGAAAAAATTTGAATAAAAATTTTTGAGAAGGGCAAAACGAAAATTACATTTTTTTAGAATTTGAAATTTTCAGATTTTGAATGACACCTCAGGAAAATCGTCATCGTCTTCTTCTTCTTCCTCATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3402</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>261423</contig_pos>
        <strand>+</strand>
        <context>GAACCTGACG[A/G]TKTCTTACTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAAGCATTTACAGGTTTGGAAGATAGCCAATTTGAAGTCGAACCTGACG</left_flank>
        <right_flank>TTTCTTACTAAAAATTGCTTATTCTGAGCTCAAAAATCGAGTTTCTAAAG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGATACAATATTGCTGATAATATATGACATATATTTTACCAGTTGACAGATTTTTGATATCTTTTAAACGAACCGAGATAATTGAGGTCAAACATTACAACTGAAGTTGGCTTCTTTTAGCGCAATTCCGGTAATCACAACCTTTCAATTTTCCCATAGTTCCAGAAATCGCCCCGAAAAACGTCTCCCGACCCAACGGCGAACCCAGATTCTCGTCTAAAAGTGCCACTTTTCGTCCTGGAACCAAAAGCGACACTGGTTCGAATGATTGCCGTTCTAATCGATAATCAATCACTATCGAAAACGATTCAATCGGAAATTGCAATGGATATCATTCGAGCCGCTGTTGGATGGGTCTCCTCTTACACCTTGCTATGTTTGGTGCTGAGACTTGGCGACCAGAAAATTCGATTATTGGCGAAGAGGGAATTGGAGATTGATGGATTGTCGAAGCATTTACAGGTTTGGAAGATAGCCAATTTGAAGTCGAACCTGACGATTTCTTACTAAAAATTGCTTATTCTGAGCTCAAAAATCGAGTTTCTAAAGCCTAAATATGCGGAAAAATCTTTAATTTTCTGTCTCAAGTTAGTCAATTTCCAGTCAAATCTGACGATTTTAGGGCTTAAAATTAGTTTTTTAGTACGAAAATGGTCCCATTTTTGCATACTTGTCAAATTCCGGGTAGCTGATTTTTTGAAAAATTTTGAGAAAATTTTTTTGAATTCCACCTGAAAAACAATTTCCTTATAATCCGCCCTTATAAAAGTATCGAAACTTCAAAATTTATAGCAATTTTGATGAAAACTTCACAAAACTTCGAAATTTTGAAATTTTGGATTTTGACCCGGCCCGTGACAAGTGTGCATTTTTGAGCTTAAAATTGGGGCTAAAATTAGCTGAAACTGACGAAAAATTCTGACTTTTTCGATTTTGAAATGTCTCGCCGGACCTTGTTTTTTATAGGAAGAAGCTGAAGCGATTTGTCAAGCGTTGACA</canonical>
            <polymorphic>CTGATACAATATTGCTGATAATATATGACATATATTTTACCAGTTGACAGATTTTTGATATCTTTTAAACGAACCGAGATAATTGAGGTCAAACATTACAACTGAAGTTGGCTTCTTTTAGCGCAATTCCGGTAATCACAACCTTTCAATTTTCCCATAGTTCCAGAAATCGCCCCGAAAAACGTCTCCCGACCCAACGGCGAACCCAGATTCTCGTCTAAAAGTGCCACTTTTCGTCCTGGAACCAAAAGCGACACTGGTTCGAATGATTGCCGTTCTAATCGATAATCAATCACTATCGAAAACGATTCAATCGGAAATTGCAATGGATATCATTCGAGCCGCTGTTGGATGGGTCTCCTCTTACACCTTGCTATGTTTGGTGCTGAGACTTGGCGACCAGAAAATTCGATTATTGGCGAAGAGGGAATTGGAGATTGATGGATTGTCGAAGCATTTACAGGTTTGGAAGATAGCCAATTTGAAGTCGAACCTGACGRTTTCTTACTAAAAATTGCTTATTCTGAGCTCAAAAATCGAGTTTCTAAAGCCTAAATATGCGGAAAAATCTTTAATTTTCTGTCTCAAGTTAGTCAATTTCCAGTCAAATCTGACGATTTTAGGGCTTAAAATTAGTTTTTTAGTACGAAAATGGTCCCATTTTTGCATACTTGTCAAATTCCGGGTAGCTGATTTTTTGAAAAATTTTGAGAAAATTTTTTTGAATTCCACCTGAAAAACAATTTCCTTATAATCCGCCCTTATAAAAGTATCGAAACTTCAAAATTTATAGCAATTTTGATGAAAACTTCACAAAACTTCGAAATTTTGAAATTTTGGATTTTGACCCGGCCCGTGACAAGTGTGCATTTTTGAGCTTAAAATTGGGGCTAAAATTAGCTGAAACTGACGAAAAATTCTGACTTTTTCGATTTTGAAATGTCTCGCCGGACCTTGTTTTTTATAGGAAGAAGCTGAAGCGATTTGTCAAGCGTTGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTCTTACACCTTGCTATGTT</pcr_primer_p1>
		<pcr_primer_p2>GACTGGAAATTGACTAACTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCCTCTTACACCTTGCTATGTTTGGTGCTGAGACTTGGCGACCAGAAAATTCGATTATTGGCGAAGAGGGAATTGGAGATTGATGGATTGTCGAAGCATTTACAGGTTTGGAAGATAGCCAATTTGAAGTCGAACCTGACGATTTCTTACTAAAAATTGCTTATTCTGAGCTCAAAAATCGAGTTTCTAAAGCCTAAATATGCGGAAAAATCTTTAATTTTCTGTCTCAAGTTAGTCAATTTCCAGTC</canonical_amplicon>
		<polymorphic_amplicon>TCCTCTTACACCTTGCTATGTTTGGTGCTGAGACTTGGCGACCAGAAAATTCGATTATTGGCGAAGAGGGAATTGGAGATTGATGGATTGTCGAAGCATTTACAGGTTTGGAAGATAGCCAATTTGAAGTCGAACCTGACGRTTTCTTACTAAAAATTGCTTATTCTGAGCTCAAAAATCGAGTTTCTAAAGCCTAAATATGCGGAAAAATCTTTAATTTTCTGTCTCAAGTTAGTCAATTTCCAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3403</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>261425</contig_pos>
        <strand>+</strand>
        <context>ACCTGACGRT[G/T]TCTTACTAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGCATTTACAGGTTTGGAAGATAGCCAATTTGAAGTCGAACCTGACGAT</left_flank>
        <right_flank>TCTTACTAAAAATTGCTTATTCTGAGCTCAAAAATCGAGTTTCTAAAGCC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATACAATATTGCTGATAATATATGACATATATTTTACCAGTTGACAGATTTTTGATATCTTTTAAACGAACCGAGATAATTGAGGTCAAACATTACAACTGAAGTTGGCTTCTTTTAGCGCAATTCCGGTAATCACAACCTTTCAATTTTCCCATAGTTCCAGAAATCGCCCCGAAAAACGTCTCCCGACCCAACGGCGAACCCAGATTCTCGTCTAAAAGTGCCACTTTTCGTCCTGGAACCAAAAGCGACACTGGTTCGAATGATTGCCGTTCTAATCGATAATCAATCACTATCGAAAACGATTCAATCGGAAATTGCAATGGATATCATTCGAGCCGCTGTTGGATGGGTCTCCTCTTACACCTTGCTATGTTTGGTGCTGAGACTTGGCGACCAGAAAATTCGATTATTGGCGAAGAGGGAATTGGAGATTGATGGATTGTCGAAGCATTTACAGGTTTGGAAGATAGCCAATTTGAAGTCGAACCTGACGATTTCTTACTAAAAATTGCTTATTCTGAGCTCAAAAATCGAGTTTCTAAAGCCTAAATATGCGGAAAAATCTTTAATTTTCTGTCTCAAGTTAGTCAATTTCCAGTCAAATCTGACGATTTTAGGGCTTAAAATTAGTTTTTTAGTACGAAAATGGTCCCATTTTTGCATACTTGTCAAATTCCGGGTAGCTGATTTTTTGAAAAATTTTGAGAAAATTTTTTTGAATTCCACCTGAAAAACAATTTCCTTATAATCCGCCCTTATAAAAGTATCGAAACTTCAAAATTTATAGCAATTTTGATGAAAACTTCACAAAACTTCGAAATTTTGAAATTTTGGATTTTGACCCGGCCCGTGACAAGTGTGCATTTTTGAGCTTAAAATTGGGGCTAAAATTAGCTGAAACTGACGAAAAATTCTGACTTTTTCGATTTTGAAATGTCTCGCCGGACCTTGTTTTTTATAGGAAGAAGCTGAAGCGATTTGTCAAGCGTTGACATA</canonical>
            <polymorphic>GATACAATATTGCTGATAATATATGACATATATTTTACCAGTTGACAGATTTTTGATATCTTTTAAACGAACCGAGATAATTGAGGTCAAACATTACAACTGAAGTTGGCTTCTTTTAGCGCAATTCCGGTAATCACAACCTTTCAATTTTCCCATAGTTCCAGAAATCGCCCCGAAAAACGTCTCCCGACCCAACGGCGAACCCAGATTCTCGTCTAAAAGTGCCACTTTTCGTCCTGGAACCAAAAGCGACACTGGTTCGAATGATTGCCGTTCTAATCGATAATCAATCACTATCGAAAACGATTCAATCGGAAATTGCAATGGATATCATTCGAGCCGCTGTTGGATGGGTCTCCTCTTACACCTTGCTATGTTTGGTGCTGAGACTTGGCGACCAGAAAATTCGATTATTGGCGAAGAGGGAATTGGAGATTGATGGATTGTCGAAGCATTTACAGGTTTGGAAGATAGCCAATTTGAAGTCGAACCTGACGATKTCTTACTAAAAATTGCTTATTCTGAGCTCAAAAATCGAGTTTCTAAAGCCTAAATATGCGGAAAAATCTTTAATTTTCTGTCTCAAGTTAGTCAATTTCCAGTCAAATCTGACGATTTTAGGGCTTAAAATTAGTTTTTTAGTACGAAAATGGTCCCATTTTTGCATACTTGTCAAATTCCGGGTAGCTGATTTTTTGAAAAATTTTGAGAAAATTTTTTTGAATTCCACCTGAAAAACAATTTCCTTATAATCCGCCCTTATAAAAGTATCGAAACTTCAAAATTTATAGCAATTTTGATGAAAACTTCACAAAACTTCGAAATTTTGAAATTTTGGATTTTGACCCGGCCCGTGACAAGTGTGCATTTTTGAGCTTAAAATTGGGGCTAAAATTAGCTGAAACTGACGAAAAATTCTGACTTTTTCGATTTTGAAATGTCTCGCCGGACCTTGTTTTTTATAGGAAGAAGCTGAAGCGATTTGTCAAGCGTTGACATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTCTTACACCTTGCTATGTT</pcr_primer_p1>
		<pcr_primer_p2>GACTGGAAATTGACTAACTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCCTCTTACACCTTGCTATGTTTGGTGCTGAGACTTGGCGACCAGAAAATTCGATTATTGGCGAAGAGGGAATTGGAGATTGATGGATTGTCGAAGCATTTACAGGTTTGGAAGATAGCCAATTTGAAGTCGAACCTGACGATTTCTTACTAAAAATTGCTTATTCTGAGCTCAAAAATCGAGTTTCTAAAGCCTAAATATGCGGAAAAATCTTTAATTTTCTGTCTCAAGTTAGTCAATTTCCAGTC</canonical_amplicon>
		<polymorphic_amplicon>TCCTCTTACACCTTGCTATGTTTGGTGCTGAGACTTGGCGACCAGAAAATTCGATTATTGGCGAAGAGGGAATTGGAGATTGATGGATTGTCGAAGCATTTACAGGTTTGGAAGATAGCCAATTTGAAGTCGAACCTGACGATKTCTTACTAAAAATTGCTTATTCTGAGCTCAAAAATCGAGTTTCTAAAGCCTAAATATGCGGAAAAATCTTTAATTTTCTGTCTCAAGTTAGTCAATTTCCAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3404</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>261454</contig_pos>
        <strand>+</strand>
        <context>ATTCTGAGCT[A/C]AAAAATCGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTGAAGTCGAACCTGACGATTTCTTACTAAAAATTGCTTATTCTGAGCT</left_flank>
        <right_flank>AAAAATCGAGTTTCTAAAGCCTAAATATGCGGAAAAATCTTTAATTTTCT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATTTTACCAGTTGACAGATTTTTGATATCTTTTAAACGAACCGAGATAATTGAGGTCAAACATTACAACTGAAGTTGGCTTCTTTTAGCGCAATTCCGGTAATCACAACCTTTCAATTTTCCCATAGTTCCAGAAATCGCCCCGAAAAACGTCTCCCGACCCAACGGCGAACCCAGATTCTCGTCTAAAAGTGCCACTTTTCGTCCTGGAACCAAAAGCGACACTGGTTCGAATGATTGCCGTTCTAATCGATAATCAATCACTATCGAAAACGATTCAATCGGAAATTGCAATGGATATCATTCGAGCCGCTGTTGGATGGGTCTCCTCTTACACCTTGCTATGTTTGGTGCTGAGACTTGGCGACCAGAAAATTCGATTATTGGCGAAGAGGGAATTGGAGATTGATGGATTGTCGAAGCATTTACAGGTTTGGAAGATAGCCAATTTGAAGTCGAACCTGACGATTTCTTACTAAAAATTGCTTATTCTGAGCTCAAAAATCGAGTTTCTAAAGCCTAAATATGCGGAAAAATCTTTAATTTTCTGTCTCAAGTTAGTCAATTTCCAGTCAAATCTGACGATTTTAGGGCTTAAAATTAGTTTTTTAGTACGAAAATGGTCCCATTTTTGCATACTTGTCAAATTCCGGGTAGCTGATTTTTTGAAAAATTTTGAGAAAATTTTTTTGAATTCCACCTGAAAAACAATTTCCTTATAATCCGCCCTTATAAAAGTATCGAAACTTCAAAATTTATAGCAATTTTGATGAAAACTTCACAAAACTTCGAAATTTTGAAATTTTGGATTTTGACCCGGCCCGTGACAAGTGTGCATTTTTGAGCTTAAAATTGGGGCTAAAATTAGCTGAAACTGACGAAAAATTCTGACTTTTTCGATTTTGAAATGTCTCGCCGGACCTTGTTTTTTATAGGAAGAAGCTGAAGCGATTTGTCAAGCGTTGACATATAATATGGACCATTTCGAGAATTTGGTAC</canonical>
            <polymorphic>ATATTTTACCAGTTGACAGATTTTTGATATCTTTTAAACGAACCGAGATAATTGAGGTCAAACATTACAACTGAAGTTGGCTTCTTTTAGCGCAATTCCGGTAATCACAACCTTTCAATTTTCCCATAGTTCCAGAAATCGCCCCGAAAAACGTCTCCCGACCCAACGGCGAACCCAGATTCTCGTCTAAAAGTGCCACTTTTCGTCCTGGAACCAAAAGCGACACTGGTTCGAATGATTGCCGTTCTAATCGATAATCAATCACTATCGAAAACGATTCAATCGGAAATTGCAATGGATATCATTCGAGCCGCTGTTGGATGGGTCTCCTCTTACACCTTGCTATGTTTGGTGCTGAGACTTGGCGACCAGAAAATTCGATTATTGGCGAAGAGGGAATTGGAGATTGATGGATTGTCGAAGCATTTACAGGTTTGGAAGATAGCCAATTTGAAGTCGAACCTGACGATTTCTTACTAAAAATTGCTTATTCTGAGCTMAAAAATCGAGTTTCTAAAGCCTAAATATGCGGAAAAATCTTTAATTTTCTGTCTCAAGTTAGTCAATTTCCAGTCAAATCTGACGATTTTAGGGCTTAAAATTAGTTTTTTAGTACGAAAATGGTCCCATTTTTGCATACTTGTCAAATTCCGGGTAGCTGATTTTTTGAAAAATTTTGAGAAAATTTTTTTGAATTCCACCTGAAAAACAATTTCCTTATAATCCGCCCTTATAAAAGTATCGAAACTTCAAAATTTATAGCAATTTTGATGAAAACTTCACAAAACTTCGAAATTTTGAAATTTTGGATTTTGACCCGGCCCGTGACAAGTGTGCATTTTTGAGCTTAAAATTGGGGCTAAAATTAGCTGAAACTGACGAAAAATTCTGACTTTTTCGATTTTGAAATGTCTCGCCGGACCTTGTTTTTTATAGGAAGAAGCTGAAGCGATTTGTCAAGCGTTGACATATAATATGGACCATTTCGAGAATTTGGTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTCTTACACCTTGCTATGTT</pcr_primer_p1>
		<pcr_primer_p2>GACTGGAAATTGACTAACTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCCTCTTACACCTTGCTATGTTTGGTGCTGAGACTTGGCGACCAGAAAATTCGATTATTGGCGAAGAGGGAATTGGAGATTGATGGATTGTCGAAGCATTTACAGGTTTGGAAGATAGCCAATTTGAAGTCGAACCTGACGATTTCTTACTAAAAATTGCTTATTCTGAGCTCAAAAATCGAGTTTCTAAAGCCTAAATATGCGGAAAAATCTTTAATTTTCTGTCTCAAGTTAGTCAATTTCCAGTC</canonical_amplicon>
		<polymorphic_amplicon>TCCTCTTACACCTTGCTATGTTTGGTGCTGAGACTTGGCGACCAGAAAATTCGATTATTGGCGAAGAGGGAATTGGAGATTGATGGATTGTCGAAGCATTTACAGGTTTGGAAGATAGCCAATTTGAAGTCGAACCTGACGATTTCTTACTAAAAATTGCTTATTCTGAGCTMAAAAATCGAGTTTCTAAAGCCTAAATATGCGGAAAAATCTTTAATTTTCTGTCTCAAGTTAGTCAATTTCCAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3405</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>261545</contig_pos>
        <strand>+</strand>
        <context>TGACGATTTT[A/T]GGGCTTAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAATTTTCTGTCTCAAGTTAGTCAATTTCCAGTCAAATCTGACGATTTT</left_flank>
        <right_flank>GGGCTTAAAATTAGTTTTTTAGTACGAAAATGGTCCCATTTTTGCATACT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAATTCCGGTAATCACAACCTTTCAATTTTCCCATAGTTCCAGAAATCGCCCCGAAAAACGTCTCCCGACCCAACGGCGAACCCAGATTCTCGTCTAAAAGTGCCACTTTTCGTCCTGGAACCAAAAGCGACACTGGTTCGAATGATTGCCGTTCTAATCGATAATCAATCACTATCGAAAACGATTCAATCGGAAATTGCAATGGATATCATTCGAGCCGCTGTTGGATGGGTCTCCTCTTACACCTTGCTATGTTTGGTGCTGAGACTTGGCGACCAGAAAATTCGATTATTGGCGAAGAGGGAATTGGAGATTGATGGATTGTCGAAGCATTTACAGGTTTGGAAGATAGCCAATTTGAAGTCGAACCTGACGATTTCTTACTAAAAATTGCTTATTCTGAGCTCAAAAATCGAGTTTCTAAAGCCTAAATATGCGGAAAAATCTTTAATTTTCTGTCTCAAGTTAGTCAATTTCCAGTCAAATCTGACGATTTTAGGGCTTAAAATTAGTTTTTTAGTACGAAAATGGTCCCATTTTTGCATACTTGTCAAATTCCGGGTAGCTGATTTTTTGAAAAATTTTGAGAAAATTTTTTTGAATTCCACCTGAAAAACAATTTCCTTATAATCCGCCCTTATAAAAGTATCGAAACTTCAAAATTTATAGCAATTTTGATGAAAACTTCACAAAACTTCGAAATTTTGAAATTTTGGATTTTGACCCGGCCCGTGACAAGTGTGCATTTTTGAGCTTAAAATTGGGGCTAAAATTAGCTGAAACTGACGAAAAATTCTGACTTTTTCGATTTTGAAATGTCTCGCCGGACCTTGTTTTTTATAGGAAGAAGCTGAAGCGATTTGTCAAGCGTTGACATATAATATGGACCATTTCGAGAATTTGGTACAGAGATTGGCATCGCCAGAAGTTGAGGTTAATCTAAAATTTCGAAAATATTCTTTTTAAAAATTTCGTTTTTCCAGCCATCCGATCTGCAA</canonical>
            <polymorphic>GCAATTCCGGTAATCACAACCTTTCAATTTTCCCATAGTTCCAGAAATCGCCCCGAAAAACGTCTCCCGACCCAACGGCGAACCCAGATTCTCGTCTAAAAGTGCCACTTTTCGTCCTGGAACCAAAAGCGACACTGGTTCGAATGATTGCCGTTCTAATCGATAATCAATCACTATCGAAAACGATTCAATCGGAAATTGCAATGGATATCATTCGAGCCGCTGTTGGATGGGTCTCCTCTTACACCTTGCTATGTTTGGTGCTGAGACTTGGCGACCAGAAAATTCGATTATTGGCGAAGAGGGAATTGGAGATTGATGGATTGTCGAAGCATTTACAGGTTTGGAAGATAGCCAATTTGAAGTCGAACCTGACGATTTCTTACTAAAAATTGCTTATTCTGAGCTCAAAAATCGAGTTTCTAAAGCCTAAATATGCGGAAAAATCTTTAATTTTCTGTCTCAAGTTAGTCAATTTCCAGTCAAATCTGACGATTTTWGGGCTTAAAATTAGTTTTTTAGTACGAAAATGGTCCCATTTTTGCATACTTGTCAAATTCCGGGTAGCTGATTTTTTGAAAAATTTTGAGAAAATTTTTTTGAATTCCACCTGAAAAACAATTTCCTTATAATCCGCCCTTATAAAAGTATCGAAACTTCAAAATTTATAGCAATTTTGATGAAAACTTCACAAAACTTCGAAATTTTGAAATTTTGGATTTTGACCCGGCCCGTGACAAGTGTGCATTTTTGAGCTTAAAATTGGGGCTAAAATTAGCTGAAACTGACGAAAAATTCTGACTTTTTCGATTTTGAAATGTCTCGCCGGACCTTGTTTTTTATAGGAAGAAGCTGAAGCGATTTGTCAAGCGTTGACATATAATATGGACCATTTCGAGAATTTGGTACAGAGATTGGCATCGCCAGAAGTTGAGGTTAATCTAAAATTTCGAAAATATTCTTTTTAAAAATTTCGTTTTTCCAGCCATCCGATCTGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCTTTAATTTTCTGTCTCAAG</pcr_primer_p1>
		<pcr_primer_p2>TTAAGCTCAAAAATGCACACT</pcr_primer_p2>
		<pcr_amplicon_size>318</pcr_amplicon_size>
		<canonical_amplicon>AAAATCTTTAATTTTCTGTCTCAAGTTAGTCAATTTCCAGTCAAATCTGACGATTTTAGGGCTTAAAATTAGTTTTTTAGTACGAAAATGGTCCCATTTTTGCATACTTGTCAAATTCCGGGTAGCTGATTTTTTGAAAAATTTTGAGAAAATTTTTTTGAATTCCACCTGAAAAACAATTTCCTTATAATCCGCCCTTATAAAAGTATCGAAACTTCAAAATTTATAGCAATTTTGATGAAAACTTCACAAAACTTCGAAATTTTGAAATTTTGGATTTTGACCCGGCCCGTGACAAGTGTGCATTTTTGAGCTTAA</canonical_amplicon>
		<polymorphic_amplicon>AAAATCTTTAATTTTCTGTCTCAAGTTAGTCAATTTCCAGTCAAATCTGACGATTTTWGGGCTTAAAATTAGTTTTTTAGTACGAAAATGGTCCCATTTTTGCATACTTGTCAAATTCCGGGTAGCTGATTTTTTGAAAAATTTTGAGAAAATTTTTTTGAATTCCACCTGAAAAACAATTTCCTTATAATCCGCCCTTATAAAAGTATCGAAACTTCAAAATTTATAGCAATTTTGATGAAAACTTCACAAAACTTCGAAATTTTGAAATTTTGGATTTTGACCCGGCCCGTGACAAGTGTGCATTTTTGAGCTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3406</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>263723</contig_pos>
        <strand></strand>
        <context>AAAAWGATTT[T/C]TCCATTTGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTGAAATTTCTAGCAGAAAAAAATATGATTTCATGTCGAAAAAAAGATTT</left_flank>
        <right_flank>TCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTCTTTAACTGAGCCAACGATCAGCAGACAGATAACAAGGAAAATGATGATACAGTAGAATATCTGAAAATTGGAAAAACTGAAACTTTTGAATTTGAAAGAAAAATCGAAATTCCAAAAAAATCTTTCGAAATTTGGAAATTTTAAAAATCTCAAATTCTGGATATTGACAATTTTGAGAGTCCGAAATTCCTTTAAAAAACTCACCAAAAACGCGGTACATGCGAAAAACGCGGACCAATAGATCATTGGATCACAATAATGCCTCTCGAACATTCCCTCGTTGAAATGGACGAACGCTTTTGAGCCGTACACCCAGACGCATCCTGAAAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTCATGTCGAAAAAAAGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTTGCCAATAACATTTTCCGACCAACTAGAATTCGTATGGTAGAACTCAACGAGCCCTAATAGATGGTACTATTTGGATTAATGTACCTTGTCTATGAGCAAAGTTACGAGCCATAAAGCAACTTGGCCTATAACTTTGCTCATAGAAAAGCTACAGTATCCCAAATGGTACCATCTTGTATAACTCGTCAAGTTCTATTATAGCACTTTTATTTTATTGAAAAATATGGATTCTGAAGGAATTTGGATTTTTTATTTCTAAAATTCTTGATTCCGAGATTCTGGATTCCAAAGAATACGAGTTCTTCTGGTTTTTTTCGAAAAAATTTTGAACTTCGCAAAATTTTCGATAAAGAAAACTCACCCAAAATAAGCCATACAACATTGGCCAACGCGAACAGGACCTCCAATCCCTTACACAACAAACTGGCACCCAACTGTCTCTGTTGTCTAC</canonical>
            <polymorphic>ATTCTCTTTAACTGAGCCAACGATCAGCAGACAGATAACAAGGAAAATGATGATACAGTAGAATATCTGAAAATTGGAAAAACTGAAACTTTTGAATTTGAAAGAAAAATCGAAATTCCAAAAAAATCTTTCGAAATTTGGAAATTTTAAAAATCTCAAATTCTGGATATTGACAATTTTGAGAGTCCGAAATTCCTTTAAAAAACTCACCAAAAACGCGGTACATGCGAAAAACGCGGACCAATAGATCATTGGATCACAATAATGCCTCTCGAACATTCCCTCGTTGAAATGGACGAACGCTTTTGAGCCGTACACCCAGACGCATCCTGAAAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTCATGTCGAAAAAAAGATTTYTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTTGCCAATAACATTTTCCGACCAACTAGAATTCGTATGGTAGAACTCAACGAGCCCTAATAGATGGTACTATTTGGATTAATGTACCTTGTCTATGAGCAAAGTTACGAGCCATAAAGCAACTTGGCCTATAACTTTGCTCATAGAAAAGCTACAGTATCCCAAATGGTACCATCTTGTATAACTCGTCAAGTTCTATTATAGCACTTTTATTTTATTGAAAAATATGGATTCTGAAGGAATTTGGATTTTTTATTTCTAAAATTCTTGATTCCGAGATTCTGGATTCCAAAGAATACGAGTTCTTCTGGTTTTTTTCGAAAAAATTTTGAACTTCGCAAAATTTTCGATAAAGAAAACTCACCCAAAATAAGCCATACAACATTGGCCAACGCGAACAGGACCTCCAATCCCTTACACAACAAACTGGCACCCAACTGTCTCTGTTGTCTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTGCATTTTTGGGAGAT</pcr_primer_p1>
		<pcr_primer_p2>ATTGGCAAGTGTGGAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>222</pcr_amplicon_size>
		<canonical_amplicon>AAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTCATGTCGAAAAAAAGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTTGCCAAT</canonical_amplicon>
		<polymorphic_amplicon>AAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTCATGTCGAAAAAAAGATTTYTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTTGCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3407</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>263717</contig_pos>
        <strand></strand>
        <context>GTCGAAAAAA[A/T]GATTTYTCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTCATGTCGAAAAAA</left_flank>
        <right_flank>GATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACGAATTCTCTTTAACTGAGCCAACGATCAGCAGACAGATAACAAGGAAAATGATGATACAGTAGAATATCTGAAAATTGGAAAAACTGAAACTTTTGAATTTGAAAGAAAAATCGAAATTCCAAAAAAATCTTTCGAAATTTGGAAATTTTAAAAATCTCAAATTCTGGATATTGACAATTTTGAGAGTCCGAAATTCCTTTAAAAAACTCACCAAAAACGCGGTACATGCGAAAAACGCGGACCAATAGATCATTGGATCACAATAATGCCTCTCGAACATTCCCTCGTTGAAATGGACGAACGCTTTTGAGCCGTACACCCAGACGCATCCTGAAAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTCATGTCGAAAAAAAGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTTGCCAATAACATTTTCCGACCAACTAGAATTCGTATGGTAGAACTCAACGAGCCCTAATAGATGGTACTATTTGGATTAATGTACCTTGTCTATGAGCAAAGTTACGAGCCATAAAGCAACTTGGCCTATAACTTTGCTCATAGAAAAGCTACAGTATCCCAAATGGTACCATCTTGTATAACTCGTCAAGTTCTATTATAGCACTTTTATTTTATTGAAAAATATGGATTCTGAAGGAATTTGGATTTTTTATTTCTAAAATTCTTGATTCCGAGATTCTGGATTCCAAAGAATACGAGTTCTTCTGGTTTTTTTCGAAAAAATTTTGAACTTCGCAAAATTTTCGATAAAGAAAACTCACCCAAAATAAGCCATACAACATTGGCCAACGCGAACAGGACCTCCAATCCCTTACACAACAAACTGGCACCCAACTGTCTCTGTT</canonical>
            <polymorphic>TGACGAATTCTCTTTAACTGAGCCAACGATCAGCAGACAGATAACAAGGAAAATGATGATACAGTAGAATATCTGAAAATTGGAAAAACTGAAACTTTTGAATTTGAAAGAAAAATCGAAATTCCAAAAAAATCTTTCGAAATTTGGAAATTTTAAAAATCTCAAATTCTGGATATTGACAATTTTGAGAGTCCGAAATTCCTTTAAAAAACTCACCAAAAACGCGGTACATGCGAAAAACGCGGACCAATAGATCATTGGATCACAATAATGCCTCTCGAACATTCCCTCGTTGAAATGGACGAACGCTTTTGAGCCGTACACCCAGACGCATCCTGAAAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTCATGTCGAAAAAAWGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTTGCCAATAACATTTTCCGACCAACTAGAATTCGTATGGTAGAACTCAACGAGCCCTAATAGATGGTACTATTTGGATTAATGTACCTTGTCTATGAGCAAAGTTACGAGCCATAAAGCAACTTGGCCTATAACTTTGCTCATAGAAAAGCTACAGTATCCCAAATGGTACCATCTTGTATAACTCGTCAAGTTCTATTATAGCACTTTTATTTTATTGAAAAATATGGATTCTGAAGGAATTTGGATTTTTTATTTCTAAAATTCTTGATTCCGAGATTCTGGATTCCAAAGAATACGAGTTCTTCTGGTTTTTTTCGAAAAAATTTTGAACTTCGCAAAATTTTCGATAAAGAAAACTCACCCAAAATAAGCCATACAACATTGGCCAACGCGAACAGGACCTCCAATCCCTTACACAACAAACTGGCACCCAACTGTCTCTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTGCATTTTTGGGAGAT</pcr_primer_p1>
		<pcr_primer_p2>AAGTGTGGAAAATAGGTTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>216</pcr_amplicon_size>
		<canonical_amplicon>AAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTCATGTCGAAAAAAAGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTT</canonical_amplicon>
		<polymorphic_amplicon>AAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTCATGTCGAAAAAAWGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3408</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>263704</contig_pos>
        <strand></strand>
        <context>AATATGATTT[C/A]ATGTCGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTT</left_flank>
        <right_flank>ATGTCGAAAAAAAGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTCTGATCCTGTGACGAATTCTCTTTAACTGAGCCAACGATCAGCAGACAGATAACAAGGAAAATGATGATACAGTAGAATATCTGAAAATTGGAAAAACTGAAACTTTTGAATTTGAAAGAAAAATCGAAATTCCAAAAAAATCTTTCGAAATTTGGAAATTTTAAAAATCTCAAATTCTGGATATTGACAATTTTGAGAGTCCGAAATTCCTTTAAAAAACTCACCAAAAACGCGGTACATGCGAAAAACGCGGACCAATAGATCATTGGATCACAATAATGCCTCTCGAACATTCCCTCGTTGAAATGGACGAACGCTTTTGAGCCGTACACCCAGACGCATCCTGAAAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTCATGTCGAAAAAAAGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTTGCCAATAACATTTTCCGACCAACTAGAATTCGTATGGTAGAACTCAACGAGCCCTAATAGATGGTACTATTTGGATTAATGTACCTTGTCTATGAGCAAAGTTACGAGCCATAAAGCAACTTGGCCTATAACTTTGCTCATAGAAAAGCTACAGTATCCCAAATGGTACCATCTTGTATAACTCGTCAAGTTCTATTATAGCACTTTTATTTTATTGAAAAATATGGATTCTGAAGGAATTTGGATTTTTTATTTCTAAAATTCTTGATTCCGAGATTCTGGATTCCAAAGAATACGAGTTCTTCTGGTTTTTTTCGAAAAAATTTTGAACTTCGCAAAATTTTCGATAAAGAAAACTCACCCAAAATAAGCCATACAACATTGGCCAACGCGAACAGGACCTCCAATCCCTTACACAACAAACTGGCACCC</canonical>
            <polymorphic>GATTCTGATCCTGTGACGAATTCTCTTTAACTGAGCCAACGATCAGCAGACAGATAACAAGGAAAATGATGATACAGTAGAATATCTGAAAATTGGAAAAACTGAAACTTTTGAATTTGAAAGAAAAATCGAAATTCCAAAAAAATCTTTCGAAATTTGGAAATTTTAAAAATCTCAAATTCTGGATATTGACAATTTTGAGAGTCCGAAATTCCTTTAAAAAACTCACCAAAAACGCGGTACATGCGAAAAACGCGGACCAATAGATCATTGGATCACAATAATGCCTCTCGAACATTCCCTCGTTGAAATGGACGAACGCTTTTGAGCCGTACACCCAGACGCATCCTGAAAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTMATGTCGAAAAAAAGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTTGCCAATAACATTTTCCGACCAACTAGAATTCGTATGGTAGAACTCAACGAGCCCTAATAGATGGTACTATTTGGATTAATGTACCTTGTCTATGAGCAAAGTTACGAGCCATAAAGCAACTTGGCCTATAACTTTGCTCATAGAAAAGCTACAGTATCCCAAATGGTACCATCTTGTATAACTCGTCAAGTTCTATTATAGCACTTTTATTTTATTGAAAAATATGGATTCTGAAGGAATTTGGATTTTTTATTTCTAAAATTCTTGATTCCGAGATTCTGGATTCCAAAGAATACGAGTTCTTCTGGTTTTTTTCGAAAAAATTTTGAACTTCGCAAAATTTTCGATAAAGAAAACTCACCCAAAATAAGCCATACAACATTGGCCAACGCGAACAGGACCTCCAATCCCTTACACAACAAACTGGCACCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 257 243</canonical_bands>
                <polymorphic_bands>757 243</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTGCATTTTTGGGAGAT</pcr_primer_p1>
		<pcr_primer_p2>AAGTGTGGAAAATAGGTTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>216</pcr_amplicon_size>
		<canonical_amplicon>AAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTCATGTCGAAAAAAAGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTT</canonical_amplicon>
		<polymorphic_amplicon>AAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTMATGTCGAAAAAAAGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3409</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>263631</contig_pos>
        <strand>+</strand>
        <context>GKGAAATTTG[A/G]GCCGTTTTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTG</left_flank>
        <right_flank>GCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTATTGATATTTATTGGTTTTTTTAGAAACAATTTTTCATCAGAAATTAAGAAACACAGAAAATTAATCAAGATTCTGATCCTGTGACGAATTCTCTTTAACTGAGCCAACGATCAGCAGACAGATAACAAGGAAAATGATGATACAGTAGAATATCTGAAAATTGGAAAAACTGAAACTTTTGAATTTGAAAGAAAAATCGAAATTCCAAAAAAATCTTTCGAAATTTGGAAATTTTAAAAATCTCAAATTCTGGATATTGACAATTTTGAGAGTCCGAAATTCCTTTAAAAAACTCACCAAAAACGCGGTACATGCGAAAAACGCGGACCAATAGATCATTGGATCACAATAATGCCTCTCGAACATTCCCTCGTTGAAATGGACGAACGCTTTTGAGCCGTACACCCAGACGCATCCTGAAAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTCATGTCGAAAAAAAGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTTGCCAATAACATTTTCCGACCAACTAGAATTCGTATGGTAGAACTCAACGAGCCCTAATAGATGGTACTATTTGGATTAATGTACCTTGTCTATGAGCAAAGTTACGAGCCATAAAGCAACTTGGCCTATAACTTTGCTCATAGAAAAGCTACAGTATCCCAAATGGTACCATCTTGTATAACTCGTCAAGTTCTATTATAGCACTTTTATTTTATTGAAAAATATGGATTCTGAAGGAATTTGGATTTTTTATTTCTAAAATTCTTGATTCCGAGATTCTGGATTCCAAAGAATACGAGTTCTTCTGGTTTTTTTCGAAAAAATTTTGAACTTCGCAAAATTTTCGATAAAGAAAACTC</canonical>
            <polymorphic>TTTTATTGATATTTATTGGTTTTTTTAGAAACAATTTTTCATCAGAAATTAAGAAACACAGAAAATTAATCAAGATTCTGATCCTGTGACGAATTCTCTTTAACTGAGCCAACGATCAGCAGACAGATAACAAGGAAAATGATGATACAGTAGAATATCTGAAAATTGGAAAAACTGAAACTTTTGAATTTGAAAGAAAAATCGAAATTCCAAAAAAATCTTTCGAAATTTGGAAATTTTAAAAATCTCAAATTCTGGATATTGACAATTTTGAGAGTCCGAAATTCCTTTAAAAAACTCACCAAAAACGCGGTACATGCGAAAAACGCGGACCAATAGATCATTGGATCACAATAATGCCTCTCGAACATTCCCTCGTTGAAATGGACGAACGCTTTTGAGCCGTACACCCAGACGCATCCTGAAAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGRGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTCATGTCGAAAAAAAGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTTGCCAATAACATTTTCCGACCAACTAGAATTCGTATGGTAGAACTCAACGAGCCCTAATAGATGGTACTATTTGGATTAATGTACCTTGTCTATGAGCAAAGTTACGAGCCATAAAGCAACTTGGCCTATAACTTTGCTCATAGAAAAGCTACAGTATCCCAAATGGTACCATCTTGTATAACTCGTCAAGTTCTATTATAGCACTTTTATTTTATTGAAAAATATGGATTCTGAAGGAATTTGGATTTTTTATTTCTAAAATTCTTGATTCCGAGATTCTGGATTCCAAAGAATACGAGTTCTTCTGGTTTTTTTCGAAAAAATTTTGAACTTCGCAAAATTTTCGATAAAGAAAACTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>501 330 169</canonical_bands>
                <polymorphic_bands>670 330</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 264 235</canonical_bands>
                <polymorphic_bands>765 235</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>294 211 170 108 99 57 24 16 11 10</canonical_bands>
                <polymorphic_bands>294 211 170 109 108 57 24 16 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTGCATTTTTGGGAGAT</pcr_primer_p1>
		<pcr_primer_p2>AAGTGTGGAAAATAGGTTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>216</pcr_amplicon_size>
		<canonical_amplicon>AAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTCATGTCGAAAAAAAGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTT</canonical_amplicon>
		<polymorphic_amplicon>AAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGRGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTCATGTCGAAAAAAAGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3410</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>263622</contig_pos>
        <strand>+</strand>
        <context>GAAATTTGTG[G/T]GAAATTTGRG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTG</left_flank>
        <right_flank>GAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGAGTGATTTTATTGATATTTATTGGTTTTTTTAGAAACAATTTTTCATCAGAAATTAAGAAACACAGAAAATTAATCAAGATTCTGATCCTGTGACGAATTCTCTTTAACTGAGCCAACGATCAGCAGACAGATAACAAGGAAAATGATGATACAGTAGAATATCTGAAAATTGGAAAAACTGAAACTTTTGAATTTGAAAGAAAAATCGAAATTCCAAAAAAATCTTTCGAAATTTGGAAATTTTAAAAATCTCAAATTCTGGATATTGACAATTTTGAGAGTCCGAAATTCCTTTAAAAAACTCACCAAAAACGCGGTACATGCGAAAAACGCGGACCAATAGATCATTGGATCACAATAATGCCTCTCGAACATTCCCTCGTTGAAATGGACGAACGCTTTTGAGCCGTACACCCAGACGCATCCTGAAAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTCATGTCGAAAAAAAGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTTGCCAATAACATTTTCCGACCAACTAGAATTCGTATGGTAGAACTCAACGAGCCCTAATAGATGGTACTATTTGGATTAATGTACCTTGTCTATGAGCAAAGTTACGAGCCATAAAGCAACTTGGCCTATAACTTTGCTCATAGAAAAGCTACAGTATCCCAAATGGTACCATCTTGTATAACTCGTCAAGTTCTATTATAGCACTTTTATTTTATTGAAAAATATGGATTCTGAAGGAATTTGGATTTTTTATTTCTAAAATTCTTGATTCCGAGATTCTGGATTCCAAAGAATACGAGTTCTTCTGGTTTTTTTCGAAAAAATTTTGAACTTCGCAAAATTTTCGATAA</canonical>
            <polymorphic>TGTGAGTGATTTTATTGATATTTATTGGTTTTTTTAGAAACAATTTTTCATCAGAAATTAAGAAACACAGAAAATTAATCAAGATTCTGATCCTGTGACGAATTCTCTTTAACTGAGCCAACGATCAGCAGACAGATAACAAGGAAAATGATGATACAGTAGAATATCTGAAAATTGGAAAAACTGAAACTTTTGAATTTGAAAGAAAAATCGAAATTCCAAAAAAATCTTTCGAAATTTGGAAATTTTAAAAATCTCAAATTCTGGATATTGACAATTTTGAGAGTCCGAAATTCCTTTAAAAAACTCACCAAAAACGCGGTACATGCGAAAAACGCGGACCAATAGATCATTGGATCACAATAATGCCTCTCGAACATTCCCTCGTTGAAATGGACGAACGCTTTTGAGCCGTACACCCAGACGCATCCTGAAAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGKGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTCATGTCGAAAAAAAGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTTGCCAATAACATTTTCCGACCAACTAGAATTCGTATGGTAGAACTCAACGAGCCCTAATAGATGGTACTATTTGGATTAATGTACCTTGTCTATGAGCAAAGTTACGAGCCATAAAGCAACTTGGCCTATAACTTTGCTCATAGAAAAGCTACAGTATCCCAAATGGTACCATCTTGTATAACTCGTCAAGTTCTATTATAGCACTTTTATTTTATTGAAAAATATGGATTCTGAAGGAATTTGGATTTTTTATTTCTAAAATTCTTGATTCCGAGATTCTGGATTCCAAAGAATACGAGTTCTTCTGGTTTTTTTCGAAAAAATTTTGAACTTCGCAAAATTTTCGATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>213 206 147 144 81 59 58 50 30 4 4 2 2</canonical_bands>
                <polymorphic_bands>213 206 147 146 81 59 58 50 30 4 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTGCATTTTTGGGAGAT</pcr_primer_p1>
		<pcr_primer_p2>AAGTGTGGAAAATAGGTTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>216</pcr_amplicon_size>
		<canonical_amplicon>AAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTCATGTCGAAAAAAAGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTT</canonical_amplicon>
		<polymorphic_amplicon>AAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGKGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTCATGTCGAAAAAAAGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3411</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>263586</contig_pos>
        <strand>+</strand>
        <context>TTTTAGGGGA[A/G]ATTTGACGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTACACCCAGACGCATCCTGAAAATTGCATTTTTGGGAGATTTTAGGGGA</left_flank>
        <right_flank>ATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACAATTTGACATGGATCACACGAATGAACAAATTTGTGAGTGATTTTATTGATATTTATTGGTTTTTTTAGAAACAATTTTTCATCAGAAATTAAGAAACACAGAAAATTAATCAAGATTCTGATCCTGTGACGAATTCTCTTTAACTGAGCCAACGATCAGCAGACAGATAACAAGGAAAATGATGATACAGTAGAATATCTGAAAATTGGAAAAACTGAAACTTTTGAATTTGAAAGAAAAATCGAAATTCCAAAAAAATCTTTCGAAATTTGGAAATTTTAAAAATCTCAAATTCTGGATATTGACAATTTTGAGAGTCCGAAATTCCTTTAAAAAACTCACCAAAAACGCGGTACATGCGAAAAACGCGGACCAATAGATCATTGGATCACAATAATGCCTCTCGAACATTCCCTCGTTGAAATGGACGAACGCTTTTGAGCCGTACACCCAGACGCATCCTGAAAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTCATGTCGAAAAAAAGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTTGCCAATAACATTTTCCGACCAACTAGAATTCGTATGGTAGAACTCAACGAGCCCTAATAGATGGTACTATTTGGATTAATGTACCTTGTCTATGAGCAAAGTTACGAGCCATAAAGCAACTTGGCCTATAACTTTGCTCATAGAAAAGCTACAGTATCCCAAATGGTACCATCTTGTATAACTCGTCAAGTTCTATTATAGCACTTTTATTTTATTGAAAAATATGGATTCTGAAGGAATTTGGATTTTTTATTTCTAAAATTCTTGATTCCGAGATTCTGGATTCCAAAGAATACGAGTTCTTCTGGTTTTTT</canonical>
            <polymorphic>TAACAATTTGACATGGATCACACGAATGAACAAATTTGTGAGTGATTTTATTGATATTTATTGGTTTTTTTAGAAACAATTTTTCATCAGAAATTAAGAAACACAGAAAATTAATCAAGATTCTGATCCTGTGACGAATTCTCTTTAACTGAGCCAACGATCAGCAGACAGATAACAAGGAAAATGATGATACAGTAGAATATCTGAAAATTGGAAAAACTGAAACTTTTGAATTTGAAAGAAAAATCGAAATTCCAAAAAAATCTTTCGAAATTTGGAAATTTTAAAAATCTCAAATTCTGGATATTGACAATTTTGAGAGTCCGAAATTCCTTTAAAAAACTCACCAAAAACGCGGTACATGCGAAAAACGCGGACCAATAGATCATTGGATCACAATAATGCCTCTCGAACATTCCCTCGTTGAAATGGACGAACGCTTTTGAGCCGTACACCCAGACGCATCCTGAAAATTGCATTTTTGGGAGATTTTAGGGGARATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTCATGTCGAAAAAAAGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTTGCCAATAACATTTTCCGACCAACTAGAATTCGTATGGTAGAACTCAACGAGCCCTAATAGATGGTACTATTTGGATTAATGTACCTTGTCTATGAGCAAAGTTACGAGCCATAAAGCAACTTGGCCTATAACTTTGCTCATAGAAAAGCTACAGTATCCCAAATGGTACCATCTTGTATAACTCGTCAAGTTCTATTATAGCACTTTTATTTTATTGAAAAATATGGATTCTGAAGGAATTTGGATTTTTTATTTCTAAAATTCTTGATTCCGAGATTCTGGATTCCAAAGAATACGAGTTCTTCTGGTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>211 172 122 104 95 55 52 32 32 28 22 21 19 16 11 8</canonical_bands>
                <polymorphic_bands>211 200 122 104 95 55 52 32 32 22 21 19 16 11 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>211 144 122 72 55 45 28 28 28 28 23 23 22 21 19 19 17 16 16 16 14 11 10 8 4</canonical_bands>
                <polymorphic_bands>211 144 122 72 56 55 45 28 28 23 23 22 21 19 19 17 16 16 16 14 11 10 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGATCACAATAATGCCTCT</pcr_primer_p1>
		<pcr_primer_p2>GCCTAATTCAGGCTAATTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>190</pcr_amplicon_size>
		<canonical_amplicon>TGGATCACAATAATGCCTCTCGAACATTCCCTCGTTGAAATGGACGAACGCTTTTGAGCCGTACACCCAGACGCATCCTGAAAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGC</canonical_amplicon>
		<polymorphic_amplicon>TGGATCACAATAATGCCTCTCGAACATTCCCTCGTTGAAATGGACGAACGCTTTTGAGCCGTACACCCAGACGCATCCTGAAAATTGCATTTTTGGGAGATTTTAGGGGARATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3412</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>263399</contig_pos>
        <strand>+</strand>
        <context>GATATTGACA[A/C]TTTTGAGAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCTTTCGAAATTTGGAAATTTTAAAAATCTCAAATTCTGGATATTGACA</left_flank>
        <right_flank>TTTTGAGAGTCCGAAATTCCTTTAAAAAACTCACCAAAAACGCGGTACAT</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTAACAATTTTCGTAATTCTCTGAAATTTAGAGATTCTTCAAATTTTCAAGATTCTTGAAATTCTGAATTCTTTAAAATAACTTTATATTTTGAATTTTTTCTGAAATTTTCAATTCTAGAAATTCTCCAGACCCGAATCGTTTGAATCAACCGGGCAAAGCCTACTACTGGACAATGATGTATCGTAACAATTTGACATGGATCACACGAATGAACAAATTTGTGAGTGATTTTATTGATATTTATTGGTTTTTTTAGAAACAATTTTTCATCAGAAATTAAGAAACACAGAAAATTAATCAAGATTCTGATCCTGTGACGAATTCTCTTTAACTGAGCCAACGATCAGCAGACAGATAACAAGGAAAATGATGATACAGTAGAATATCTGAAAATTGGAAAAACTGAAACTTTTGAATTTGAAAGAAAAATCGAAATTCCAAAAAAATCTTTCGAAATTTGGAAATTTTAAAAATCTCAAATTCTGGATATTGACAATTTTGAGAGTCCGAAATTCCTTTAAAAAACTCACCAAAAACGCGGTACATGCGAAAAACGCGGACCAATAGATCATTGGATCACAATAATGCCTCTCGAACATTCCCTCGTTGAAATGGACGAACGCTTTTGAGCCGTACACCCAGACGCATCCTGAAAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTCATGTCGAAAAAAAGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTTGCCAATAACATTTTCCGACCAACTAGAATTCGTATGGTAGAACTCAACGAGCCCTAATAGATGGTACTATTTGGATTAATGTACCTTGTCTATGAGCAAAGTTACGAGCCATAAAGCAACTTGGCCT</canonical>
            <polymorphic>TCTAACAATTTTCGTAATTCTCTGAAATTTAGAGATTCTTCAAATTTTCAAGATTCTTGAAATTCTGAATTCTTTAAAATAACTTTATATTTTGAATTTTTTCTGAAATTTTCAATTCTAGAAATTCTCCAGACCCGAATCGTTTGAATCAACCGGGCAAAGCCTACTACTGGACAATGATGTATCGTAACAATTTGACATGGATCACACGAATGAACAAATTTGTGAGTGATTTTATTGATATTTATTGGTTTTTTTAGAAACAATTTTTCATCAGAAATTAAGAAACACAGAAAATTAATCAAGATTCTGATCCTGTGACGAATTCTCTTTAACTGAGCCAACGATCAGCAGACAGATAACAAGGAAAATGATGATACAGTAGAATATCTGAAAATTGGAAAAACTGAAACTTTTGAATTTGAAAGAAAAATCGAAATTCCAAAAAAATCTTTCGAAATTTGGAAATTTTAAAAATCTCAAATTCTGGATATTGACAMTTTTGAGAGTCCGAAATTCCTTTAAAAAACTCACCAAAAACGCGGTACATGCGAAAAACGCGGACCAATAGATCATTGGATCACAATAATGCCTCTCGAACATTCCCTCGTTGAAATGGACGAACGCTTTTGAGCCGTACACCCAGACGCATCCTGAAAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTCATGTCGAAAAAAAGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTTGCCAATAACATTTTCCGACCAACTAGAATTCGTATGGTAGAACTCAACGAGCCCTAATAGATGGTACTATTTGGATTAATGTACCTTGTCTATGAGCAAAGTTACGAGCCATAAAGCAACTTGGCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>144 122 101 72 69 45 28 28 28 28 27 23 23 21 19 19 18 17 17 16 16 16 14 12 11 10 10 9 9 8 7 7 6</canonical_bands>
                <polymorphic_bands>144 122 101 72 69 45 32 28 28 28 28 27 23 23 21 19 19 18 17 17 16 14 12 11 10 10 9 9 8 7 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGATAACAAGGAAAATGATGATA</pcr_primer_p1>
		<pcr_primer_p2>GAATGTTCGAGAGGCATTATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGATAACAAGGAAAATGATGATACAGTAGAATATCTGAAAATTGGAAAAACTGAAACTTTTGAATTTGAAAGAAAAATCGAAATTCCAAAAAAATCTTTCGAAATTTGGAAATTTTAAAAATCTCAAATTCTGGATATTGACAATTTTGAGAGTCCGAAATTCCTTTAAAAAACTCACCAAAAACGCGGTACATGCGAAAAACGCGGACCAATAGATCATTGGATCACAATAATGCCTCTCGAACATTC</canonical_amplicon>
		<polymorphic_amplicon>CAGATAACAAGGAAAATGATGATACAGTAGAATATCTGAAAATTGGAAAAACTGAAACTTTTGAATTTGAAAGAAAAATCGAAATTCCAAAAAAATCTTTCGAAATTTGGAAATTTTAAAAATCTCAAATTCTGGATATTGACAMTTTTGAGAGTCCGAAATTCCTTTAAAAAACTCACCAAAAACGCGGTACATGCGAAAAACGCGGACCAATAGATCATTGGATCACAATAATGCCTCTCGAACATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3413</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>289977</contig_pos>
        <strand>+</strand>
        <context>GAAAGTCGCT[A/G]CCCGTAAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTGCTGAAAATGCACCACTTTACCGCTGGAAATGTCTGAAAGTCGCT</left_flank>
        <right_flank>CCCGTAAATCGCGCCAAACCCTCGCGGGTCTCACCGCGATTTCAGTTTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCCATGCTCTCTCCAATTCACACACTGTCTCGTAGCCGACTTTTTAGATCTCCGGCAAACTTTCGCGCTGATTAAGACGTTTTTTCGCGGATTTATCAAATATTTTCGATTAAATAGGTCAAAAAAATGTCTGGGGCAATTTGGAGATAAAAATAATCAAAAATTGAGCTCCTAAAACATACTTTTTATGCATGGAAAAAAGCTTAATCTTTCAAATAATCTGAACTTTATTCATGTATGAATAACTTTACACGAATCATAGAATTTATTAAATGAAAAAACGAGAAGAAGCATCGCCGAATGGATCCTGAATTCTTTTTTTGAAATTTTGATGAAATTCCGCTGAAAAATTTAGCTCCTGCTGAAAGGTTCCATTTCTTTTTGCTTTGTTGTTCACAGCTTCACATAAAACAATTCTTAATACTTTAAACTGCAACAAATGTCCGATTTTTGCTGAAAATGCACCACTTTACCGCTGGAAATGTCTGAAAGTCGCTACCCGTAAATCGCGCCAAACCCTCGCGGGTCTCACCGCGATTTCAGTTTTCCAGCCGGCACACTCCTCATTCCACGAGCTCTCTCGCATTTTCAGTGTGTCAGGCGCTGTTGAAAACTTTCTAAATCTTGATCTCAAATTTTGCAGAAAGAAATCGCGCAAATTTCGTCGGTTTTTTGTCTAGGGATTTATTGCAGTTTCAGGTAAAGTTTTATAAGAGAAATCCGAGAAAAATAATCCCGGAAAAATGTCGACTGAGTCGTTGGAAGACGGAGAAATCGCATCCGAGCAGTGAGAAAACTCCCGGAAGGATTCGTTGAATAATTCCCTGAAATCATTTTTCAGTGAAGAACAAAGTCCAGAACAAGGCGATTTCAATGACGAAGTTCTAATTGATCAGATTATTCAAAATGAGGTTTAGAGTTGTTTTTTTCTTTTCTTTTTTGAAATTTTTCTATTCGCTGAATTCCAAAAGTATCACCCCAAAAATAATCTAGAATGG</canonical>
            <polymorphic>AAGCCATGCTCTCTCCAATTCACACACTGTCTCGTAGCCGACTTTTTAGATCTCCGGCAAACTTTCGCGCTGATTAAGACGTTTTTTCGCGGATTTATCAAATATTTTCGATTAAATAGGTCAAAAAAATGTCTGGGGCAATTTGGAGATAAAAATAATCAAAAATTGAGCTCCTAAAACATACTTTTTATGCATGGAAAAAAGCTTAATCTTTCAAATAATCTGAACTTTATTCATGTATGAATAACTTTACACGAATCATAGAATTTATTAAATGAAAAAACGAGAAGAAGCATCGCCGAATGGATCCTGAATTCTTTTTTTGAAATTTTGATGAAATTCCGCTGAAAAATTTAGCTCCTGCTGAAAGGTTCCATTTCTTTTTGCTTTGTTGTTCACAGCTTCACATAAAACAATTCTTAATACTTTAAACTGCAACAAATGTCCGATTTTTGCTGAAAATGCACCACTTTACCGCTGGAAATGTCTGAAAGTCGCTRCCCGTAAATCGCGCCAAACCCTCGCGGGTCTCACCGCGATTTCAGTTTTCCAGCCGGCACACTCCTCATTCCACGAGCTCTCTCGCATTTTCAGTGTGTCAGGCGCTGTTGAAAACTTTCTAAATCTTGATCTCAAATTTTGCAGAAAGAAATCGCGCAAATTTCGTCGGTTTTTTGTCTAGGGATTTATTGCAGTTTCAGGTAAAGTTTTATAAGAGAAATCCGAGAAAAATAATCCCGGAAAAATGTCGACTGAGTCGTTGGAAGACGGAGAAATCGCATCCGAGCAGTGAGAAAACTCCCGGAAGGATTCGTTGAATAATTCCCTGAAATCATTTTTCAGTGAAGAACAAAGTCCAGAACAAGGCGATTTCAATGACGAAGTTCTAATTGATCAGATTATTCAAAATGAGGTTTAGAGTTGTTTTTTTCTTTTCTTTTTTGAAATTTTTCTATTCGCTGAATTCCAAAAGTATCACCCCAAAAATAATCTAGAATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTAGCTCCTGCTGAAAG</pcr_primer_p1>
		<pcr_primer_p2>ACACTGAAAATGCGAGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAATTTAGCTCCTGCTGAAAGGTTCCATTTCTTTTTGCTTTGTTGTTCACAGCTTCACATAAAACAATTCTTAATACTTTAAACTGCAACAAATGTCCGATTTTTGCTGAAAATGCACCACTTTACCGCTGGAAATGTCTGAAAGTCGCTACCCGTAAATCGCGCCAAACCCTCGCGGGTCTCACCGCGATTTCAGTTTTCCAGCCGGCACACTCCTCATTCCACGAGCTCTCTCGCATTTTCAGTGT</canonical_amplicon>
		<polymorphic_amplicon>AAATTTAGCTCCTGCTGAAAGGTTCCATTTCTTTTTGCTTTGTTGTTCACAGCTTCACATAAAACAATTCTTAATACTTTAAACTGCAACAAATGTCCGATTTTTGCTGAAAATGCACCACTTTACCGCTGGAAATGTCTGAAAGTCGCTRCCCGTAAATCGCGCCAAACCCTCGCGGGTCTCACCGCGATTTCAGTTTTCCAGCCGGCACACTCCTCATTCCACGAGCTCTCTCGCATTTTCAGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3414</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>328605</contig_pos>
        <strand>+</strand>
        <context>ACAGAAATCC[C/G]TTCGATTCGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGGAAGCCATGACATCGAAGAATCCATCAACGATCAACACACAGAAATCC</left_flank>
        <right_flank>TTCGATTCGGTCCCTGTACATAGACTGGCTTGTTTTTTGTACGGGCGATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGCATACATTCTTCTCCTGAACAAGAATCCGAGTGATAAAGCACTGCTCAAATCCATCGTAAAGTTCATTGGGCGTCATAGGATCTGTCTTCCTTCCAACCAAAAACTGTACCAACTGATCGGGATTAGGCAGATTTGGATGAATCGTCTTATCGATTCTCAACGTCTCTCCCAATCTTGTGAAATCGTAATCCATCGGCCGAACTCCTTCGAAAGACGGTCTACCTGGATCAATCGTCTTCAGAAACGCCTCAGTTTCAGCTCTCAAATCGTTGATATATCTGACTTTGATGAACGATTGAGGTGGCTGAGAATTGTATTTTTGATCGATTTTTCTGAATTTTCGAACTAACACATTCCGCCTTGAAAACCTTATCCAATTCTGTGAAGAATGGACCAAGTTTATTCCAATTTTCCGCTTTGTGAAAAATGAATGGACCCATGATAGTGGAAGCCATGACATCGAAGAATCCATCAACGATCAACACACAGAAATCCCTTCGATTCGGTCCCTGTACATAGACTGGCTTGTTTTTTGTACGGGCGATCGGATAGCGAATGAACTGAAAACTTTAGAGTGTTCGGAGCGAATTTTGTTATATTTTTAGAACCTGGATTTTATCAAAAATCTCTTTATAGTTCTCCTCGATATCTTTGAAATCGATTGTGCTGATGATCGGTCCCACTTCTTCAGTCACTTTTCCTTTTTTCGTGTATCTCACTATCGCGTTGTCCAATTCAGTCTTCATCACTAACTCAGCTCTCCATCTTCAAATAGTCGGACGGCGATTGGAACTTTTGAGGCGTTCGCGGCGATGTTCCACTGGAAAAAGGTGGGTTTTGGGTTTTTTTTCGCCAAATTGAGCCTCATGGAACATTCTGGCTTAAAATTCAACCTTCGCGCATTTTTTGTTAAGCTGAGCGCAAATGCGAGACGCCATAAAATCACGCCCCGCTGAACAAAAAAGGCGCGAAATTTGAGTTTCGAGCTAGGAACCC</canonical>
            <polymorphic>AGGCATACATTCTTCTCCTGAACAAGAATCCGAGTGATAAAGCACTGCTCAAATCCATCGTAAAGTTCATTGGGCGTCATAGGATCTGTCTTCCTTCCAACCAAAAACTGTACCAACTGATCGGGATTAGGCAGATTTGGATGAATCGTCTTATCGATTCTCAACGTCTCTCCCAATCTTGTGAAATCGTAATCCATCGGCCGAACTCCTTCGAAAGACGGTCTACCTGGATCAATCGTCTTCAGAAACGCCTCAGTTTCAGCTCTCAAATCGTTGATATATCTGACTTTGATGAACGATTGAGGTGGCTGAGAATTGTATTTTTGATCGATTTTTCTGAATTTTCGAACTAACACATTCCGCCTTGAAAACCTTATCCAATTCTGTGAAGAATGGACCAAGTTTATTCCAATTTTCCGCTTTGTGAAAAATGAATGGACCCATGATAGTGGAAGCCATGACATCGAAGAATCCATCAACGATCAACACACAGAAATCCSTTCGATTCGGTCCCTGTACATAGACTGGCTTGTTTTTTGTACGGGCGATCGGATAGCGAATGAACTGAAAACTTTAGAGTGTTCGGAGCGAATTTTGTTATATTTTTAGAACCTGGATTTTATCAAAAATCTCTTTATAGTTCTCCTCGATATCTTTGAAATCGATTGTGCTGATGATCGGTCCCACTTCTTCAGTCACTTTTCCTTTTTTCGTGTATCTCACTATCGCGTTGTCCAATTCAGTCTTCATCACTAACTCAGCTCTCCATCTTCAAATAGTCGGACGGCGATTGGAACTTTTGAGGCGTTCGCGGCGATGTTCCACTGGAAAAAGGTGGGTTTTGGGTTTTTTTTCGCCAAATTGAGCCTCATGGAACATTCTGGCTTAAAATTCAACCTTCGCGCATTTTTTGTTAAGCTGAGCGCAAATGCGAGACGCCATAAAATCACGCCCCGCTGAACAAAAAAGGCGCGAAATTTGAGTTTCGAGCTAGGAACCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGAATGGACCAAGTTTATT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTGATAAAATCCAGGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TGAAGAATGGACCAAGTTTATTCCAATTTTCCGCTTTGTGAAAAATGAATGGACCCATGATAGTGGAAGCCATGACATCGAAGAATCCATCAACGATCAACACACAGAAATCCCTTCGATTCGGTCCCTGTACATAGACTGGCTTGTTTTTTGTACGGGCGATCGGATAGCGAATGAACTGAAAACTTTAGAGTGTTCGGAGCGAATTTTGTTATATTTTTAGAACCTGGATTTTATCAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TGAAGAATGGACCAAGTTTATTCCAATTTTCCGCTTTGTGAAAAATGAATGGACCCATGATAGTGGAAGCCATGACATCGAAGAATCCATCAACGATCAACACACAGAAATCCSTTCGATTCGGTCCCTGTACATAGACTGGCTTGTTTTTTGTACGGGCGATCGGATAGCGAATGAACTGAAAACTTTAGAGTGTTCGGAGCGAATTTTGTTATATTTTTAGAACCTGGATTTTATCAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3415</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>328639</contig_pos>
        <strand>+</strand>
        <context>ACTGGCTTGT[G/T]TTTTGTACGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAACACACAGAAATCCCTTCGATTCGGTCCCTGTACATAGACTGGCTTGT</left_flank>
        <right_flank>TTTTGTACGGGCGATCGGATAGCGAATGAACTGAAAACTTTAGAGTGTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATAAAGCACTGCTCAAATCCATCGTAAAGTTCATTGGGCGTCATAGGATCTGTCTTCCTTCCAACCAAAAACTGTACCAACTGATCGGGATTAGGCAGATTTGGATGAATCGTCTTATCGATTCTCAACGTCTCTCCCAATCTTGTGAAATCGTAATCCATCGGCCGAACTCCTTCGAAAGACGGTCTACCTGGATCAATCGTCTTCAGAAACGCCTCAGTTTCAGCTCTCAAATCGTTGATATATCTGACTTTGATGAACGATTGAGGTGGCTGAGAATTGTATTTTTGATCGATTTTTCTGAATTTTCGAACTAACACATTCCGCCTTGAAAACCTTATCCAATTCTGTGAAGAATGGACCAAGTTTATTCCAATTTTCCGCTTTGTGAAAAATGAATGGACCCATGATAGTGGAAGCCATGACATCGAAGAATCCATCAACGATCAACACACAGAAATCCCTTCGATTCGGTCCCTGTACATAGACTGGCTTGTTTTTTGTACGGGCGATCGGATAGCGAATGAACTGAAAACTTTAGAGTGTTCGGAGCGAATTTTGTTATATTTTTAGAACCTGGATTTTATCAAAAATCTCTTTATAGTTCTCCTCGATATCTTTGAAATCGATTGTGCTGATGATCGGTCCCACTTCTTCAGTCACTTTTCCTTTTTTCGTGTATCTCACTATCGCGTTGTCCAATTCAGTCTTCATCACTAACTCAGCTCTCCATCTTCAAATAGTCGGACGGCGATTGGAACTTTTGAGGCGTTCGCGGCGATGTTCCACTGGAAAAAGGTGGGTTTTGGGTTTTTTTTCGCCAAATTGAGCCTCATGGAACATTCTGGCTTAAAATTCAACCTTCGCGCATTTTTTGTTAAGCTGAGCGCAAATGCGAGACGCCATAAAATCACGCCCCGCTGAACAAAAAAGGCGCGAAATTTGAGTTTCGAGCTAGGAACCCTTTGAAAATCACAAAAAAACTCGAAAATTAGGAT</canonical>
            <polymorphic>TGATAAAGCACTGCTCAAATCCATCGTAAAGTTCATTGGGCGTCATAGGATCTGTCTTCCTTCCAACCAAAAACTGTACCAACTGATCGGGATTAGGCAGATTTGGATGAATCGTCTTATCGATTCTCAACGTCTCTCCCAATCTTGTGAAATCGTAATCCATCGGCCGAACTCCTTCGAAAGACGGTCTACCTGGATCAATCGTCTTCAGAAACGCCTCAGTTTCAGCTCTCAAATCGTTGATATATCTGACTTTGATGAACGATTGAGGTGGCTGAGAATTGTATTTTTGATCGATTTTTCTGAATTTTCGAACTAACACATTCCGCCTTGAAAACCTTATCCAATTCTGTGAAGAATGGACCAAGTTTATTCCAATTTTCCGCTTTGTGAAAAATGAATGGACCCATGATAGTGGAAGCCATGACATCGAAGAATCCATCAACGATCAACACACAGAAATCCCTTCGATTCGGTCCCTGTACATAGACTGGCTTGTKTTTTGTACGGGCGATCGGATAGCGAATGAACTGAAAACTTTAGAGTGTTCGGAGCGAATTTTGTTATATTTTTAGAACCTGGATTTTATCAAAAATCTCTTTATAGTTCTCCTCGATATCTTTGAAATCGATTGTGCTGATGATCGGTCCCACTTCTTCAGTCACTTTTCCTTTTTTCGTGTATCTCACTATCGCGTTGTCCAATTCAGTCTTCATCACTAACTCAGCTCTCCATCTTCAAATAGTCGGACGGCGATTGGAACTTTTGAGGCGTTCGCGGCGATGTTCCACTGGAAAAAGGTGGGTTTTGGGTTTTTTTTCGCCAAATTGAGCCTCATGGAACATTCTGGCTTAAAATTCAACCTTCGCGCATTTTTTGTTAAGCTGAGCGCAAATGCGAGACGCCATAAAATCACGCCCCGCTGAACAAAAAAGGCGCGAAATTTGAGTTTCGAGCTAGGAACCCTTTGAAAATCACAAAAAAACTCGAAAATTAGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGAATGGACCAAGTTTATT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTGATAAAATCCAGGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TGAAGAATGGACCAAGTTTATTCCAATTTTCCGCTTTGTGAAAAATGAATGGACCCATGATAGTGGAAGCCATGACATCGAAGAATCCATCAACGATCAACACACAGAAATCCCTTCGATTCGGTCCCTGTACATAGACTGGCTTGTTTTTTGTACGGGCGATCGGATAGCGAATGAACTGAAAACTTTAGAGTGTTCGGAGCGAATTTTGTTATATTTTTAGAACCTGGATTTTATCAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TGAAGAATGGACCAAGTTTATTCCAATTTTCCGCTTTGTGAAAAATGAATGGACCCATGATAGTGGAAGCCATGACATCGAAGAATCCATCAACGATCAACACACAGAAATCCCTTCGATTCGGTCCCTGTACATAGACTGGCTTGTKTTTTGTACGGGCGATCGGATAGCGAATGAACTGAAAACTTTAGAGTGTTCGGAGCGAATTTTGTTATATTTTTAGAACCTGGATTTTATCAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3416</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>331204</contig_pos>
        <strand></strand>
        <context>AATTGTTGAA[A/G]ATAACTCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAATCAGACTTGATATTTTCCAAAAAAAAAAAAACCAGAAATTGTTGAA</left_flank>
        <right_flank>ATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATGGGTCTCGAAGCGATTTCCCAGTGTAGTCCTCTCGGACAAAGTGTTGGGTGGTTCGGAATTATTTTTTCAAATTTTAGCCCAAAAATTCGCGAATCCGGCTTGAAATTTTCCGAAAAAATCTGAAAATTATTGGAAATCAGTTCAAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAAAAACGATGAGATTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCCTAAATTTGGAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTCTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAATTTTTTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATTGCGAATCAGACTTGATATTTTCCAAAAAAAAAAAAACCAGAAATTGTTGAAAATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAGCTCAATTTTCGATTCACAACGCTCAAAATGAATCTGAACAGCCCTGAAGCTGTGTTATATCCTGAATGTGTACTTCTCTCCACTAAAAATTATATTCTGGACAGTGTAAGTGCGCTATTTGTGTTGTCATTTTTGTCAAAAGATCGCGTTTTTGTTTCAGATAACAATGAAAATGTCATCAGATTTATCGCAATTCGAAGCGCCAACGAGTAACGTAGGAGATAAAGAAGCAGAGCTGGTTGCCAAATTATTTGAAAGTTCAAATTTGAGTCTAAGTATGAAAAAAAAGTGCTCCATTGATAAATATTAAATTTTTATTTGAAGGAATGTATGGATCGTCTGAAGAGCTGGCAGAAAACGTGAAGATCTATAGAAGCTCTCCTGGAAGTGGAGTGTACGCCGATGCGAATGGCCATCCTATGTATCCCTACTACGTATTTTTTGCAAATT</canonical>
            <polymorphic>CAAATGGGTCTCGAAGCGATTTCCCAGTGTAGTCCTCTCGGACAAAGTGTTGGGTGGTTCGGAATTATTTTTTCAAATTTTAGCCCAAAAATTCGCGAATCCGGCTTGAAATTTTCCGAAAAAATCTGAAAATTATTGGAAATCAGTTCAAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAAAAACGATGAGATTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCCTAAATTTGGAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTCTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAATTTTTTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATTGCGAATCAGACTTGATATTTTCCAAAAAAAAAAAAACCAGAAATTGTTGAARATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAGCTCAATTTTCGATTCACAACGCTCAAAATGAATCTGAACAGCCCTGAAGCTGTGTTATATCCTGAATGTGTACTTCTCTCCACTAAAAATTATATTCTGGACAGTGTAAGTGCGCTATTTGTGTTGTCATTTTTGTCAAAAGATCGCGTTTTTGTTTCAGATAACAATGAAAATGTCATCAGATTTATCGCAATTCGAAGCGCCAACGAGTAACGTAGGAGATAAAGAAGCAGAGCTGGTTGCCAAATTATTTGAAAGTTCAAATTTGAGTCTAAGTATGAAAAAAAAGTGCTCCATTGATAAATATTAAATTTTTATTTGAAGGAATGTATGGATCGTCTGAAGAGCTGGCAGAAAACGTGAAGATCTATAGAAGCTCTCCTGGAAGTGGAGTGTACGCCGATGCGAATGGCCATCCTATGTATCCCTACTACGTATTTTTTGCAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATTTCACAGTGTAGTCCTCT</pcr_primer_p1>
		<pcr_primer_p2>ATTCAGGATATAACACAGCTTCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGATTTCACAGTGTAGTCCTCTCGGACAATTTTTTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATTGCGAATCAGACTTGATATTTTCCAAAAAAAAAAAAACCAGAAATTGTTGAAAATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAGCTCAATTTTCGATTCACAACGCTCAAAATGAATCTGAACAGCCCTGAAGCTGTGTTATATCCTGAAT</canonical_amplicon>
		<polymorphic_amplicon>CGATTTCACAGTGTAGTCCTCTCGGACAATTTTTTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATTGCGAATCAGACTTGATATTTTCCAAAAAAAAAAAAACCAGAAATTGTTGAARATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAGCTCAATTTTCGATTCACAACGCTCAAAATGAATCTGAACAGCCCTGAAGCTGTGTTATATCCTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3417</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>331152</contig_pos>
        <strand>+</strand>
        <context>GCAAAACAAT[C/T]GCGAATCAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTTTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAAT</left_flank>
        <right_flank>GCGAATCAGACTTGATATTTTCCAAAAAAAAAAAAACCAGAAATTGTTGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTGTAACCCCAAAACTCCCGCCTAAAAAGCTTAAAGGCGCACATGATAATACAAATGGGTCTCGAAGCGATTTCCCAGTGTAGTCCTCTCGGACAAAGTGTTGGGTGGTTCGGAATTATTTTTTCAAATTTTAGCCCAAAAATTCGCGAATCCGGCTTGAAATTTTCCGAAAAAATCTGAAAATTATTGGAAATCAGTTCAAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAAAAACGATGAGATTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCCTAAATTTGGAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTCTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAATTTTTTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATTGCGAATCAGACTTGATATTTTCCAAAAAAAAAAAAACCAGAAATTGTTGAAAATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAGCTCAATTTTCGATTCACAACGCTCAAAATGAATCTGAACAGCCCTGAAGCTGTGTTATATCCTGAATGTGTACTTCTCTCCACTAAAAATTATATTCTGGACAGTGTAAGTGCGCTATTTGTGTTGTCATTTTTGTCAAAAGATCGCGTTTTTGTTTCAGATAACAATGAAAATGTCATCAGATTTATCGCAATTCGAAGCGCCAACGAGTAACGTAGGAGATAAAGAAGCAGAGCTGGTTGCCAAATTATTTGAAAGTTCAAATTTGAGTCTAAGTATGAAAAAAAAGTGCTCCATTGATAAATATTAAATTTTTATTTGAAGGAATGTATGGATCGTCTGAAGAGCTGGCAGAAAACGTGAAGATCTATAGAAGCTCTCCTGGAAGTGGAGTGTAC</canonical>
            <polymorphic>GCTGTAACCCCAAAACTCCCGCCTAAAAAGCTTAAAGGCGCACATGATAATACAAATGGGTCTCGAAGCGATTTCCCAGTGTAGTCCTCTCGGACAAAGTGTTGGGTGGTTCGGAATTATTTTTTCAAATTTTAGCCCAAAAATTCGCGAATCCGGCTTGAAATTTTCCGAAAAAATCTGAAAATTATTGGAAATCAGTTCAAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAAAAACGATGAGATTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCCTAAATTTGGAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTCTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAATTTTTTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATYGCGAATCAGACTTGATATTTTCCAAAAAAAAAAAAACCAGAAATTGTTGAAAATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAGCTCAATTTTCGATTCACAACGCTCAAAATGAATCTGAACAGCCCTGAAGCTGTGTTATATCCTGAATGTGTACTTCTCTCCACTAAAAATTATATTCTGGACAGTGTAAGTGCGCTATTTGTGTTGTCATTTTTGTCAAAAGATCGCGTTTTTGTTTCAGATAACAATGAAAATGTCATCAGATTTATCGCAATTCGAAGCGCCAACGAGTAACGTAGGAGATAAAGAAGCAGAGCTGGTTGCCAAATTATTTGAAAGTTCAAATTTGAGTCTAAGTATGAAAAAAAAGTGCTCCATTGATAAATATTAAATTTTTATTTGAAGGAATGTATGGATCGTCTGAAGAGCTGGCAGAAAACGTGAAGATCTATAGAAGCTCTCCTGGAAGTGGAGTGTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>118 114 104 90 89 84 64 58 54 47 45 21 20 18 17 14 14 13 10 6</canonical_bands>
                <polymorphic_bands>118 114 104 90 89 84 64 59 58 54 47 21 20 18 17 14 13 10 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATTTCACAGTGTAGTCCTCT</pcr_primer_p1>
		<pcr_primer_p2>ATTCAGGATATAACACAGCTTCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGATTTCACAGTGTAGTCCTCTCGGACAATTTTTTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATTGCGAATCAGACTTGATATTTTCCAAAAAAAAAAAAACCAGAAATTGTTGAAAATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAGCTCAATTTTCGATTCACAACGCTCAAAATGAATCTGAACAGCCCTGAAGCTGTGTTATATCCTGAAT</canonical_amplicon>
		<polymorphic_amplicon>CGATTTCACAGTGTAGTCCTCTCGGACAATTTTTTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATYGCGAATCAGACTTGATATTTTCCAAAAAAAAAAAAACCAGAAATTGTTGAAAATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAGCTCAATTTTCGATTCACAACGCTCAAAATGAATCTGAACAGCCCTGAAGCTGTGTTATATCCTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3418</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>331107</contig_pos>
        <strand>+</strand>
        <context>GGACAATTTT[G/T]TTGGCGGTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACCAATCGGTCTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAATTTT</left_flank>
        <right_flank>TTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATTGCGAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAACGGAACAAAACTGGAAATTTTGGGAAAACAGCAAGTTTGGGCTGTAACCCCAAAACTCCCGCCTAAAAAGCTTAAAGGCGCACATGATAATACAAATGGGTCTCGAAGCGATTTCCCAGTGTAGTCCTCTCGGACAAAGTGTTGGGTGGTTCGGAATTATTTTTTCAAATTTTAGCCCAAAAATTCGCGAATCCGGCTTGAAATTTTCCGAAAAAATCTGAAAATTATTGGAAATCAGTTCAAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAAAAACGATGAGATTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCCTAAATTTGGAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTCTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAATTTTTTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATTGCGAATCAGACTTGATATTTTCCAAAAAAAAAAAAACCAGAAATTGTTGAAAATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAGCTCAATTTTCGATTCACAACGCTCAAAATGAATCTGAACAGCCCTGAAGCTGTGTTATATCCTGAATGTGTACTTCTCTCCACTAAAAATTATATTCTGGACAGTGTAAGTGCGCTATTTGTGTTGTCATTTTTGTCAAAAGATCGCGTTTTTGTTTCAGATAACAATGAAAATGTCATCAGATTTATCGCAATTCGAAGCGCCAACGAGTAACGTAGGAGATAAAGAAGCAGAGCTGGTTGCCAAATTATTTGAAAGTTCAAATTTGAGTCTAAGTATGAAAAAAAAGTGCTCCATTGATAAATATTAAATTTTTATTTGAAGGAATGTATGGATCGTCTGAAGAGCTGGCA</canonical>
            <polymorphic>ATTAACGGAACAAAACTGGAAATTTTGGGAAAACAGCAAGTTTGGGCTGTAACCCCAAAACTCCCGCCTAAAAAGCTTAAAGGCGCACATGATAATACAAATGGGTCTCGAAGCGATTTCCCAGTGTAGTCCTCTCGGACAAAGTGTTGGGTGGTTCGGAATTATTTTTTCAAATTTTAGCCCAAAAATTCGCGAATCCGGCTTGAAATTTTCCGAAAAAATCTGAAAATTATTGGAAATCAGTTCAAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAAAAACGATGAGATTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCCTAAATTTGGAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTCTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAATTTTKTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATTGCGAATCAGACTTGATATTTTCCAAAAAAAAAAAAACCAGAAATTGTTGAAAATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAGCTCAATTTTCGATTCACAACGCTCAAAATGAATCTGAACAGCCCTGAAGCTGTGTTATATCCTGAATGTGTACTTCTCTCCACTAAAAATTATATTCTGGACAGTGTAAGTGCGCTATTTGTGTTGTCATTTTTGTCAAAAGATCGCGTTTTTGTTTCAGATAACAATGAAAATGTCATCAGATTTATCGCAATTCGAAGCGCCAACGAGTAACGTAGGAGATAAAGAAGCAGAGCTGGTTGCCAAATTATTTGAAAGTTCAAATTTGAGTCTAAGTATGAAAAAAAAGTGCTCCATTGATAAATATTAAATTTTTATTTGAAGGAATGTATGGATCGTCTGAAGAGCTGGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAGGCGCACATGATAATAC</pcr_primer_p1>
		<pcr_primer_p2>AGATTCATTTTGAGCGTTGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAAAGGCGCACATGATAATACAAATGGGTCTCGAAGCGATTTCCCAGTGTAGTCCTCTCGGACAAAGTGTTGGGTGGTTCGGAATTATTTTTTCAAATTTTAGCCCAAAAATTCGCGAATCCGGCTTGAAATTTTCCGAAAAAATCTGAAAATTATTGGAAATCAGTTCAAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAAAAACGATGAGATTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCCTAAATTTGGAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTCTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAATTTTTTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATTGCGAATCAGACTTGATATTTTCCAAAAAAAAAAAAACCAGAAATTGTTGAAAATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAGCTCAATTTTCGATTCACAACGCTCAAAATGAATCT</canonical_amplicon>
		<polymorphic_amplicon>TAAAGGCGCACATGATAATACAAATGGGTCTCGAAGCGATTTCCCAGTGTAGTCCTCTCGGACAAAGTGTTGGGTGGTTCGGAATTATTTTTTCAAATTTTAGCCCAAAAATTCGCGAATCCGGCTTGAAATTTTCCGAAAAAATCTGAAAATTATTGGAAATCAGTTCAAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAAAAACGATGAGATTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCCTAAATTTGGAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTCTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAATTTTKTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATTGCGAATCAGACTTGATATTTTCCAAAAAAAAAAAAACCAGAAATTGTTGAAAATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAGCTCAATTTTCGATTCACAACGCTCAAAATGAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3419</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>331067</contig_pos>
        <strand>+</strand>
        <context>ACCAATCGGT[C/T]TCGAAGCGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGT</left_flank>
        <right_flank>TCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAATTTTTTTGGCGGTCG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTCCTCTCGGACAATGTATTTCGCGGTTGGAAATTATAAATTAACGGAACAAAACTGGAAATTTTGGGAAAACAGCAAGTTTGGGCTGTAACCCCAAAACTCCCGCCTAAAAAGCTTAAAGGCGCACATGATAATACAAATGGGTCTCGAAGCGATTTCCCAGTGTAGTCCTCTCGGACAAAGTGTTGGGTGGTTCGGAATTATTTTTTCAAATTTTAGCCCAAAAATTCGCGAATCCGGCTTGAAATTTTCCGAAAAAATCTGAAAATTATTGGAAATCAGTTCAAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAAAAACGATGAGATTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCCTAAATTTGGAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTCTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAATTTTTTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATTGCGAATCAGACTTGATATTTTCCAAAAAAAAAAAAACCAGAAATTGTTGAAAATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAGCTCAATTTTCGATTCACAACGCTCAAAATGAATCTGAACAGCCCTGAAGCTGTGTTATATCCTGAATGTGTACTTCTCTCCACTAAAAATTATATTCTGGACAGTGTAAGTGCGCTATTTGTGTTGTCATTTTTGTCAAAAGATCGCGTTTTTGTTTCAGATAACAATGAAAATGTCATCAGATTTATCGCAATTCGAAGCGCCAACGAGTAACGTAGGAGATAAAGAAGCAGAGCTGGTTGCCAAATTATTTGAAAGTTCAAATTTGAGTCTAAGTATGAAAAAAAAGTGCTCCATTGATAAATATTAAATT</canonical>
            <polymorphic>AGTCCTCTCGGACAATGTATTTCGCGGTTGGAAATTATAAATTAACGGAACAAAACTGGAAATTTTGGGAAAACAGCAAGTTTGGGCTGTAACCCCAAAACTCCCGCCTAAAAAGCTTAAAGGCGCACATGATAATACAAATGGGTCTCGAAGCGATTTCCCAGTGTAGTCCTCTCGGACAAAGTGTTGGGTGGTTCGGAATTATTTTTTCAAATTTTAGCCCAAAAATTCGCGAATCCGGCTTGAAATTTTCCGAAAAAATCTGAAAATTATTGGAAATCAGTTCAAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAAAAACGATGAGATTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCCTAAATTTGGAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTYTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAATTTTTTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATTGCGAATCAGACTTGATATTTTCCAAAAAAAAAAAAACCAGAAATTGTTGAAAATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAGCTCAATTTTCGATTCACAACGCTCAAAATGAATCTGAACAGCCCTGAAGCTGTGTTATATCCTGAATGTGTACTTCTCTCCACTAAAAATTATATTCTGGACAGTGTAAGTGCGCTATTTGTGTTGTCATTTTTGTCAAAAGATCGCGTTTTTGTTTCAGATAACAATGAAAATGTCATCAGATTTATCGCAATTCGAAGCGCCAACGAGTAACGTAGGAGATAAAGAAGCAGAGCTGGTTGCCAAATTATTTGAAAGTTCAAATTTGAGTCTAAGTATGAAAAAAAAGTGCTCCATTGATAAATATTAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>269 248 216 147 84 36</canonical_bands>
                <polymorphic_bands>517 216 147 84 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGGAAATCATCAAGTTCAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAATTGAGCTGAAAAGGATATT</pcr_primer_p2>
		<pcr_amplicon_size>279</pcr_amplicon_size>
		<canonical_amplicon>AGAGGAAATCATCAAGTTCAATCCTAAATTTGGAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTCTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAATTTTTTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATTGCGAATCAGACTTGATATTTTCCAAAAAAAAAAAAACCAGAAATTGTTGAAAATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAGCTCAATTTT</canonical_amplicon>
		<polymorphic_amplicon>AGAGGAAATCATCAAGTTCAATCCTAAATTTGGAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTYTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAATTTTTTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATTGCGAATCAGACTTGATATTTTCCAAAAAAAAAAAAACCAGAAATTGTTGAAAATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAGCTCAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3420</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>331019</contig_pos>
        <strand>+</strand>
        <context>YAARTTTGGA[A/G]AACTCCCGCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCCTAAATTTGGA</left_flank>
        <right_flank>AACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTCTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGCGCACACGACGATACCAATGGCTCTCGAAGCGATCTCACAGTGTAGTCCTCTCGGACAATGTATTTCGCGGTTGGAAATTATAAATTAACGGAACAAAACTGGAAATTTTGGGAAAACAGCAAGTTTGGGCTGTAACCCCAAAACTCCCGCCTAAAAAGCTTAAAGGCGCACATGATAATACAAATGGGTCTCGAAGCGATTTCCCAGTGTAGTCCTCTCGGACAAAGTGTTGGGTGGTTCGGAATTATTTTTTCAAATTTTAGCCCAAAAATTCGCGAATCCGGCTTGAAATTTTCCGAAAAAATCTGAAAATTATTGGAAATCAGTTCAAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAAAAACGATGAGATTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCCTAAATTTGGAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTCTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAATTTTTTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATTGCGAATCAGACTTGATATTTTCCAAAAAAAAAAAAACCAGAAATTGTTGAAAATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAGCTCAATTTTCGATTCACAACGCTCAAAATGAATCTGAACAGCCCTGAAGCTGTGTTATATCCTGAATGTGTACTTCTCTCCACTAAAAATTATATTCTGGACAGTGTAAGTGCGCTATTTGTGTTGTCATTTTTGTCAAAAGATCGCGTTTTTGTTTCAGATAACAATGAAAATGTCATCAGATTTATCGCAATTCGAAGCGCCAACGAGTAACGTAGGAGATAAAGAAGCAGAGCTGGTTGCCAAATTATTTGAAAGTTCAAAT</canonical>
            <polymorphic>AAGGCGCACACGACGATACCAATGGCTCTCGAAGCGATCTCACAGTGTAGTCCTCTCGGACAATGTATTTCGCGGTTGGAAATTATAAATTAACGGAACAAAACTGGAAATTTTGGGAAAACAGCAAGTTTGGGCTGTAACCCCAAAACTCCCGCCTAAAAAGCTTAAAGGCGCACATGATAATACAAATGGGTCTCGAAGCGATTTCCCAGTGTAGTCCTCTCGGACAAAGTGTTGGGTGGTTCGGAATTATTTTTTCAAATTTTAGCCCAAAAATTCGCGAATCCGGCTTGAAATTTTCCGAAAAAATCTGAAAATTATTGGAAATCAGTTCAAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAAAAACGATGAGATTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCCTAAATTTGGARAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTCTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAATTTTTTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATTGCGAATCAGACTTGATATTTTCCAAAAAAAAAAAAACCAGAAATTGTTGAAAATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAGCTCAATTTTCGATTCACAACGCTCAAAATGAATCTGAACAGCCCTGAAGCTGTGTTATATCCTGAATGTGTACTTCTCTCCACTAAAAATTATATTCTGGACAGTGTAAGTGCGCTATTTGTGTTGTCATTTTTGTCAAAAGATCGCGTTTTTGTTTCAGATAACAATGAAAATGTCATCAGATTTATCGCAATTCGAAGCGCCAACGAGTAACGTAGGAGATAAAGAAGCAGAGCTGGTTGCCAAATTATTTGAAAGTTCAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCGGATATTTTGTGAATAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGTCCGAGAGGACTACACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAAAAACGATGAGATTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCCTAAATTTGGAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTCTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAAAAACGATGAGATTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCCTAAATTTGGARAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTCTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3421</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>331012</contig_pos>
        <strand>+</strand>
        <context>TCAATCCYAA[A/G]TTTGGARAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCCTAA</left_flank>
        <right_flank>TTTGGAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTTTAAAGGCGCACACGACGATACCAATGGCTCTCGAAGCGATCTCACAGTGTAGTCCTCTCGGACAATGTATTTCGCGGTTGGAAATTATAAATTAACGGAACAAAACTGGAAATTTTGGGAAAACAGCAAGTTTGGGCTGTAACCCCAAAACTCCCGCCTAAAAAGCTTAAAGGCGCACATGATAATACAAATGGGTCTCGAAGCGATTTCCCAGTGTAGTCCTCTCGGACAAAGTGTTGGGTGGTTCGGAATTATTTTTTCAAATTTTAGCCCAAAAATTCGCGAATCCGGCTTGAAATTTTCCGAAAAAATCTGAAAATTATTGGAAATCAGTTCAAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAAAAACGATGAGATTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCCTAAATTTGGAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTCTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAATTTTTTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATTGCGAATCAGACTTGATATTTTCCAAAAAAAAAAAAACCAGAAATTGTTGAAAATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAGCTCAATTTTCGATTCACAACGCTCAAAATGAATCTGAACAGCCCTGAAGCTGTGTTATATCCTGAATGTGTACTTCTCTCCACTAAAAATTATATTCTGGACAGTGTAAGTGCGCTATTTGTGTTGTCATTTTTGTCAAAAGATCGCGTTTTTGTTTCAGATAACAATGAAAATGTCATCAGATTTATCGCAATTCGAAGCGCCAACGAGTAACGTAGGAGATAAAGAAGCAGAGCTGGTTGCCAAATTATTTGAAAG</canonical>
            <polymorphic>ACCTTTAAAGGCGCACACGACGATACCAATGGCTCTCGAAGCGATCTCACAGTGTAGTCCTCTCGGACAATGTATTTCGCGGTTGGAAATTATAAATTAACGGAACAAAACTGGAAATTTTGGGAAAACAGCAAGTTTGGGCTGTAACCCCAAAACTCCCGCCTAAAAAGCTTAAAGGCGCACATGATAATACAAATGGGTCTCGAAGCGATTTCCCAGTGTAGTCCTCTCGGACAAAGTGTTGGGTGGTTCGGAATTATTTTTTCAAATTTTAGCCCAAAAATTCGCGAATCCGGCTTGAAATTTTCCGAAAAAATCTGAAAATTATTGGAAATCAGTTCAAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAAAAACGATGAGATTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCCTAARTTTGGAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTCTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAATTTTTTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATTGCGAATCAGACTTGATATTTTCCAAAAAAAAAAAAACCAGAAATTGTTGAAAATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAGCTCAATTTTCGATTCACAACGCTCAAAATGAATCTGAACAGCCCTGAAGCTGTGTTATATCCTGAATGTGTACTTCTCTCCACTAAAAATTATATTCTGGACAGTGTAAGTGCGCTATTTGTGTTGTCATTTTTGTCAAAAGATCGCGTTTTTGTTTCAGATAACAATGAAAATGTCATCAGATTTATCGCAATTCGAAGCGCCAACGAGTAACGTAGGAGATAAAGAAGCAGAGCTGGTTGCCAAATTATTTGAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>378 152 124 118 115 79 20 14</canonical_bands>
                <polymorphic_bands>378 242 152 115 79 20 14</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>139 118 104 90 87 84 64 58 54 45 21 21 20 18 14 14 13 13 10 7 6</canonical_bands>
                <polymorphic_bands>208 139 104 87 84 64 58 54 45 21 21 20 18 14 14 13 13 10 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATCGGATATTTTGTGAATAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGTCCGAGAGGACTACACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAAAAACGATGAGATTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCCTAAATTTGGAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTCTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAAAAACGATGAGATTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCCTAARTTTGGAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTCTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3422</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>331009</contig_pos>
        <strand>+</strand>
        <context>AGTTCAATCC[C/T]AARTTTGGAR</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCC</left_flank>
        <right_flank>AAATTTGGAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCACCTTTAAAGGCGCACACGACGATACCAATGGCTCTCGAAGCGATCTCACAGTGTAGTCCTCTCGGACAATGTATTTCGCGGTTGGAAATTATAAATTAACGGAACAAAACTGGAAATTTTGGGAAAACAGCAAGTTTGGGCTGTAACCCCAAAACTCCCGCCTAAAAAGCTTAAAGGCGCACATGATAATACAAATGGGTCTCGAAGCGATTTCCCAGTGTAGTCCTCTCGGACAAAGTGTTGGGTGGTTCGGAATTATTTTTTCAAATTTTAGCCCAAAAATTCGCGAATCCGGCTTGAAATTTTCCGAAAAAATCTGAAAATTATTGGAAATCAGTTCAAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAAAAACGATGAGATTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCCTAAATTTGGAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTCTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAATTTTTTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATTGCGAATCAGACTTGATATTTTCCAAAAAAAAAAAAACCAGAAATTGTTGAAAATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAGCTCAATTTTCGATTCACAACGCTCAAAATGAATCTGAACAGCCCTGAAGCTGTGTTATATCCTGAATGTGTACTTCTCTCCACTAAAAATTATATTCTGGACAGTGTAAGTGCGCTATTTGTGTTGTCATTTTTGTCAAAAGATCGCGTTTTTGTTTCAGATAACAATGAAAATGTCATCAGATTTATCGCAATTCGAAGCGCCAACGAGTAACGTAGGAGATAAAGAAGCAGAGCTGGTTGCCAAATTATTTGA</canonical>
            <polymorphic>CCCACCTTTAAAGGCGCACACGACGATACCAATGGCTCTCGAAGCGATCTCACAGTGTAGTCCTCTCGGACAATGTATTTCGCGGTTGGAAATTATAAATTAACGGAACAAAACTGGAAATTTTGGGAAAACAGCAAGTTTGGGCTGTAACCCCAAAACTCCCGCCTAAAAAGCTTAAAGGCGCACATGATAATACAAATGGGTCTCGAAGCGATTTCCCAGTGTAGTCCTCTCGGACAAAGTGTTGGGTGGTTCGGAATTATTTTTTCAAATTTTAGCCCAAAAATTCGCGAATCCGGCTTGAAATTTTCCGAAAAAATCTGAAAATTATTGGAAATCAGTTCAAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAAAAACGATGAGATTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCCYAAATTTGGAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTCTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAATTTTTTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATTGCGAATCAGACTTGATATTTTCCAAAAAAAAAAAAACCAGAAATTGTTGAAAATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAGCTCAATTTTCGATTCACAACGCTCAAAATGAATCTGAACAGCCCTGAAGCTGTGTTATATCCTGAATGTGTACTTCTCTCCACTAAAAATTATATTCTGGACAGTGTAAGTGCGCTATTTGTGTTGTCATTTTTGTCAAAAGATCGCGTTTTTGTTTCAGATAACAATGAAAATGTCATCAGATTTATCGCAATTCGAAGCGCCAACGAGTAACGTAGGAGATAAAGAAGCAGAGCTGGTTGCCAAATTATTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCGGATATTTTGTGAATAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGTCCGAGAGGACTACACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAAAAACGATGAGATTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCCTAAATTTGGAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTCTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAAAAACGATGAGATTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCCYAAATTTGGAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTCTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3423</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>330897</contig_pos>
        <strand>+</strand>
        <context>ACTGGGAATT[C/T]AGGGAAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGTTCAAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATT</left_flank>
        <right_flank>AGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGTGTAGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCGTCCCACACGTTCAACTCCTCGAGAGGCATATTTAAACGAAATTTCGAGAACATTATTTTTTTCATGTCCCCCACCTTTAAAGGCGCACACGACGATACCAATGGCTCTCGAAGCGATCTCACAGTGTAGTCCTCTCGGACAATGTATTTCGCGGTTGGAAATTATAAATTAACGGAACAAAACTGGAAATTTTGGGAAAACAGCAAGTTTGGGCTGTAACCCCAAAACTCCCGCCTAAAAAGCTTAAAGGCGCACATGATAATACAAATGGGTCTCGAAGCGATTTCCCAGTGTAGTCCTCTCGGACAAAGTGTTGGGTGGTTCGGAATTATTTTTTCAAATTTTAGCCCAAAAATTCGCGAATCCGGCTTGAAATTTTCCGAAAAAATCTGAAAATTATTGGAAATCAGTTCAAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAAAAACGATGAGATTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCCTAAATTTGGAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTCTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAATTTTTTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATTGCGAATCAGACTTGATATTTTCCAAAAAAAAAAAAACCAGAAATTGTTGAAAATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAGCTCAATTTTCGATTCACAACGCTCAAAATGAATCTGAACAGCCCTGAAGCTGTGTTATATCCTGAATGTGTACTTCTCTCCACTAAAAATTATATTCTGGACAGTGTAAGTGCGCTATTTGTGTTGTCATTTTTGTCAAAAGA</canonical>
            <polymorphic>CCGTGTAGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCGTCCCACACGTTCAACTCCTCGAGAGGCATATTTAAACGAAATTTCGAGAACATTATTTTTTTCATGTCCCCCACCTTTAAAGGCGCACACGACGATACCAATGGCTCTCGAAGCGATCTCACAGTGTAGTCCTCTCGGACAATGTATTTCGCGGTTGGAAATTATAAATTAACGGAACAAAACTGGAAATTTTGGGAAAACAGCAAGTTTGGGCTGTAACCCCAAAACTCCCGCCTAAAAAGCTTAAAGGCGCACATGATAATACAAATGGGTCTCGAAGCGATTTCCCAGTGTAGTCCTCTCGGACAAAGTGTTGGGTGGTTCGGAATTATTTTTTCAAATTTTAGCCCAAAAATTCGCGAATCCGGCTTGAAATTTTCCGAAAAAATCTGAAAATTATTGGAAATCAGTTCAAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTYAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAAAAACGATGAGATTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCCTAAATTTGGAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTCTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAATTTTTTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATTGCGAATCAGACTTGATATTTTCCAAAAAAAAAAAAACCAGAAATTGTTGAAAATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAGCTCAATTTTCGATTCACAACGCTCAAAATGAATCTGAACAGCCCTGAAGCTGTGTTATATCCTGAATGTGTACTTCTCTCCACTAAAAATTATATTCTGGACAGTGTAAGTGCGCTATTTGTGTTGTCATTTTTGTCAAAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>263 152 148 124 118 82 79 20 14</canonical_bands>
                <polymorphic_bands>263 197 152 148 124 82 20 14</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGGTTCGGAATTATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AACTTGATGATTTCCTCTCATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGTGGTTCGGAATTATTTTTTCAAATTTTAGCCCAAAAATTCGCGAATCCGGCTTGAAATTTTCCGAAAAAATCTGAAAATTATTGGAAATCAGTTCAAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAAAAACGATGAGATTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTT</canonical_amplicon>
		<polymorphic_amplicon>GGTGGTTCGGAATTATTTTTTCAAATTTTAGCCCAAAAATTCGCGAATCCGGCTTGAAATTTTCCGAAAAAATCTGAAAATTATTGGAAATCAGTTCAAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTYAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAAAAACGATGAGATTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3424</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>330882</contig_pos>
        <strand>+</strand>
        <context>AATAAACGGG[A/G]TAAAACTGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAATTATTGGAAATCAGTTCAAAATCGGATATTTTGTGAATAAACGGG</left_flank>
        <right_flank>TAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGCTTCCTCTTTGCCCGTGTAGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCGTCCCACACGTTCAACTCCTCGAGAGGCATATTTAAACGAAATTTCGAGAACATTATTTTTTTCATGTCCCCCACCTTTAAAGGCGCACACGACGATACCAATGGCTCTCGAAGCGATCTCACAGTGTAGTCCTCTCGGACAATGTATTTCGCGGTTGGAAATTATAAATTAACGGAACAAAACTGGAAATTTTGGGAAAACAGCAAGTTTGGGCTGTAACCCCAAAACTCCCGCCTAAAAAGCTTAAAGGCGCACATGATAATACAAATGGGTCTCGAAGCGATTTCCCAGTGTAGTCCTCTCGGACAAAGTGTTGGGTGGTTCGGAATTATTTTTTCAAATTTTAGCCCAAAAATTCGCGAATCCGGCTTGAAATTTTCCGAAAAAATCTGAAAATTATTGGAAATCAGTTCAAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAAAAACGATGAGATTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCCTAAATTTGGAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTCTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAATTTTTTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATTGCGAATCAGACTTGATATTTTCCAAAAAAAAAAAAACCAGAAATTGTTGAAAATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAGCTCAATTTTCGATTCACAACGCTCAAAATGAATCTGAACAGCCCTGAAGCTGTGTTATATCCTGAATGTGTACTTCTCTCCACTAAAAATTATATTCTGGACAGTGTAAGTGCGCTATTTGTGTTGTC</canonical>
            <polymorphic>CCGCTTCCTCTTTGCCCGTGTAGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCGTCCCACACGTTCAACTCCTCGAGAGGCATATTTAAACGAAATTTCGAGAACATTATTTTTTTCATGTCCCCCACCTTTAAAGGCGCACACGACGATACCAATGGCTCTCGAAGCGATCTCACAGTGTAGTCCTCTCGGACAATGTATTTCGCGGTTGGAAATTATAAATTAACGGAACAAAACTGGAAATTTTGGGAAAACAGCAAGTTTGGGCTGTAACCCCAAAACTCCCGCCTAAAAAGCTTAAAGGCGCACATGATAATACAAATGGGTCTCGAAGCGATTTCCCAGTGTAGTCCTCTCGGACAAAGTGTTGGGTGGTTCGGAATTATTTTTTCAAATTTTAGCCCAAAAATTCGCGAATCCGGCTTGAAATTTTCCGAAAAAATCTGAAAATTATTGGAAATCAGTTCAAAATCGGATATTTTGTGAATAAACGGGRTAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAAAAACGATGAGATTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCCTAAATTTGGAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTCTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAATTTTTTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATTGCGAATCAGACTTGATATTTTCCAAAAAAAAAAAAACCAGAAATTGTTGAAAATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAGCTCAATTTTCGATTCACAACGCTCAAAATGAATCTGAACAGCCCTGAAGCTGTGTTATATCCTGAATGTGTACTTCTCTCCACTAAAAATTATATTCTGGACAGTGTAAGTGCGCTATTTGTGTTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACATGATAATACAAATGGGTCT</pcr_primer_p1>
		<pcr_primer_p2>CAAATGGAGAAAATAAAGCAATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CACATGATAATACAAATGGGTCTCGAAGCGATTTCCCAGTGTAGTCCTCTCGGACAAAGTGTTGGGTGGTTCGGAATTATTTTTTCAAATTTTAGCCCAAAAATTCGCGAATCCGGCTTGAAATTTTCCGAAAAAATCTGAAAATTATTGGAAATCAGTTCAAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTG</canonical_amplicon>
		<polymorphic_amplicon>CACATGATAATACAAATGGGTCTCGAAGCGATTTCCCAGTGTAGTCCTCTCGGACAAAGTGTTGGGTGGTTCGGAATTATTTTTTCAAATTTTAGCCCAAAAATTCGCGAATCCGGCTTGAAATTTTCCGAAAAAATCTGAAAATTATTGGAAATCAGTTCAAAATCGGATATTTTGTGAATAAACGGGRTAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3425</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>330831</contig_pos>
        <strand>+</strand>
        <context>CGAAAAAATC[A/T]GAAAATTATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTAGCCCAAAAATTCGCGAATCCGGCTTGAAATTTTCCGAAAAAATC</left_flank>
        <right_flank>GAAAATTATTGGAAATCAGTTCAAAATCGGATATTTTGTGAATAAACGGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTTTGCAATCGGGTGACCGCTTCCTCTTTGCCCGTGTAGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCGTCCCACACGTTCAACTCCTCGAGAGGCATATTTAAACGAAATTTCGAGAACATTATTTTTTTCATGTCCCCCACCTTTAAAGGCGCACACGACGATACCAATGGCTCTCGAAGCGATCTCACAGTGTAGTCCTCTCGGACAATGTATTTCGCGGTTGGAAATTATAAATTAACGGAACAAAACTGGAAATTTTGGGAAAACAGCAAGTTTGGGCTGTAACCCCAAAACTCCCGCCTAAAAAGCTTAAAGGCGCACATGATAATACAAATGGGTCTCGAAGCGATTTCCCAGTGTAGTCCTCTCGGACAAAGTGTTGGGTGGTTCGGAATTATTTTTTCAAATTTTAGCCCAAAAATTCGCGAATCCGGCTTGAAATTTTCCGAAAAAATCTGAAAATTATTGGAAATCAGTTCAAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAAAAACGATGAGATTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCCTAAATTTGGAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTCTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAATTTTTTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATTGCGAATCAGACTTGATATTTTCCAAAAAAAAAAAAACCAGAAATTGTTGAAAATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAGCTCAATTTTCGATTCACAACGCTCAAAATGAATCTGAACAGCCCTGAAGCTGTGTTATATCCTGAATGTGTACTTCT</canonical>
            <polymorphic>GCCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTTTGCAATCGGGTGACCGCTTCCTCTTTGCCCGTGTAGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCGTCCCACACGTTCAACTCCTCGAGAGGCATATTTAAACGAAATTTCGAGAACATTATTTTTTTCATGTCCCCCACCTTTAAAGGCGCACACGACGATACCAATGGCTCTCGAAGCGATCTCACAGTGTAGTCCTCTCGGACAATGTATTTCGCGGTTGGAAATTATAAATTAACGGAACAAAACTGGAAATTTTGGGAAAACAGCAAGTTTGGGCTGTAACCCCAAAACTCCCGCCTAAAAAGCTTAAAGGCGCACATGATAATACAAATGGGTCTCGAAGCGATTTCCCAGTGTAGTCCTCTCGGACAAAGTGTTGGGTGGTTCGGAATTATTTTTTCAAATTTTAGCCCAAAAATTCGCGAATCCGGCTTGAAATTTTCCGAAAAAATCWGAAAATTATTGGAAATCAGTTCAAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAAAAACGATGAGATTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCCTAAATTTGGAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTCTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAATTTTTTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATTGCGAATCAGACTTGATATTTTCCAAAAAAAAAAAAACCAGAAATTGTTGAAAATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAGCTCAATTTTCGATTCACAACGCTCAAAATGAATCTGAACAGCCCTGAAGCTGTGTTATATCCTGAATGTGTACTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACATGATAATACAAATGGGTCT</pcr_primer_p1>
		<pcr_primer_p2>CAAATGGAGAAAATAAAGCAATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CACATGATAATACAAATGGGTCTCGAAGCGATTTCCCAGTGTAGTCCTCTCGGACAAAGTGTTGGGTGGTTCGGAATTATTTTTTCAAATTTTAGCCCAAAAATTCGCGAATCCGGCTTGAAATTTTCCGAAAAAATCTGAAAATTATTGGAAATCAGTTCAAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTG</canonical_amplicon>
		<polymorphic_amplicon>CACATGATAATACAAATGGGTCTCGAAGCGATTTCCCAGTGTAGTCCTCTCGGACAAAGTGTTGGGTGGTTCGGAATTATTTTTTCAAATTTTAGCCCAAAAATTCGCGAATCCGGCTTGAAATTTTCCGAAAAAATCWGAAAATTATTGGAAATCAGTTCAAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3426</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>97904</contig_pos>
        <strand></strand>
        <context>AATTCCAGAT[G/T]TTTAGTTCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAGAATTTTTGCTGAAAAAAATTTTTTTTTTTTTTTGAAATTCCAGAT</left_flank>
        <right_flank>TTTAGTTCATCCAGAATTCTGAATTCTGGAGGATGTGATGATTCAGAATT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTTCAGCTTCAGAAGTTTATACCAGATGACGTCACAGATGCTTCTATTCTGAATTTAAAAAAAAACCAAGAAGATAAAATCTCACCTTGTTTACGGTTTCCCAACCTTTACATGCTTACACCTTTCTTCTTTTTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCTTCTCCGTAAACCATGTGTATTCATAGAAATCCAGTTCTTCTTCTTCTTCTTCTTTTATCTTCTCCGAAACATCTCAAACGATTAAAGGGCATGTCGTTGGGCAAAAAAAAAACCGTGTGTTAAAATTTATTCGGGGGATAAGAAAAGGAGAAAGTGAGGAAAAAAAGAAGCAGCTGATTCTGATAAGTGATCTTTCTATTTGATAAATGATGGATCATACAAAATTTTAAGAGTACTATAAAAAGTTTCTTATCAAAATATTTTCTAGTCAACAAAAAAGAATTTTTGCTGAAAAAAATTTTTTTTTTTTTTTGAAATTCCAGATGTTTAGTTCATCCAGAATTCTGAATTCTGGAGGATGTGATGATTCAGAATTTGATTCATAATTAGAGAGTACAGAACATCGAGAGACGCAGAGAACAAATTGGAGGATGAGAAGATAAGAAAAGAATTTGTCATAATTGATAAGAAAATTTTGGGGAAAAATGCACAATTTTGCGAAATTCCGGGTAATTTTTGTTGACAAGAATTTCAAGGTACTGTAGGTCGTAGTATTGAAGACATTTCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAAGGCACCTAGGCGTGTGGGGTATCATT</canonical>
            <polymorphic>TCTTTCAGCTTCAGAAGTTTATACCAGATGACGTCACAGATGCTTCTATTCTGAATTTAAAAAAAAACCAAGAAGATAAAATCTCACCTTGTTTACGGTTTCCCAACCTTTACATGCTTACACCTTTCTTCTTTTTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCTTCTCCGTAAACCATGTGTATTCATAGAAATCCAGTTCTTCTTCTTCTTCTTCTTTTATCTTCTCCGAAACATCTCAAACGATTAAAGGGCATGTCGTTGGGCAAAAAAAAAACCGTGTGTTAAAATTTATTCGGGGGATAAGAAAAGGAGAAAGTGAGGAAAAAAAGAAGCAGCTGATTCTGATAAGTGATCTTTCTATTTGATAAATGATGGATCATACAAAATTTTAAGAGTACTATAAAAAGTTTCTTATCAAAATATTTTCTAGTCAACAAAAAAGAATTTTTGCTGAAAAAAATTTTTTTTTTTTTTTGAAATTCCAGATKTTTAGTTCATCCAGAATTCTGAATTCTGGAGGATGTGATGATTCAGAATTTGATTCATAATTAGAGAGTACAGAACATCGAGAGACGCAGAGAACAAATTGGAGGATGAGAAGATAAGAAAAGAATTTGTCATAATTGATAAGAAAATTTTGGGGAAAAATGCACAATTTTGCGAAATTCCGGGTAATTTTTGTTGACAAGAATTTCAAGGTACTGTAGGTCGTAGTATTGAAGACATTTCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAAGGCACCTAGGCGTGTGGGGTATCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATAAGAAAAGGAGAAAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>AATCAAATTCTGAATCATCACAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGATAAGAAAAGGAGAAAGTGAGGAAAAAAAGAAGCAGCTGATTCTGATAAGTGATCTTTCTATTTGATAAATGATGGATCATACAAAATTTTAAGAGTACTATAAAAAGTTTCTTATCAAAATATTTTCTAGTCAACAAAAAAGAATTTTTGCTGAAAAAAATTTTTTTTTTTTTTTGAAATTCCAGATGTTTAGTTCATCCAGAATTCTGAATTCTGGAGGATGTGATGATTCAGAATTTGATT</canonical_amplicon>
		<polymorphic_amplicon>GGATAAGAAAAGGAGAAAGTGAGGAAAAAAAGAAGCAGCTGATTCTGATAAGTGATCTTTCTATTTGATAAATGATGGATCATACAAAATTTTAAGAGTACTATAAAAAGTTTCTTATCAAAATATTTTCTAGTCAACAAAAAAGAATTTTTGCTGAAAAAAATTTTTTTTTTTTTTTGAAATTCCAGATKTTTAGTTCATCCAGAATTCTGAATTCTGGAGGATGTGATGATTCAGAATTTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3427</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>97924</contig_pos>
        <strand>+</strand>
        <context>TCCAGAATTC[G/T]GAATTCTGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATTTTTTTTTTTTTTTGAAATTCCAGATGTTTAGTTCATCCAGAATTC</left_flank>
        <right_flank>GAATTCTGGAGGATGTGATGATTCAGAATTTGATTCATAATTAGAGAGTA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATACCAGATGACGTCACAGATGCTTCTATTCTGAATTTAAAAAAAAACCAAGAAGATAAAATCTCACCTTGTTTACGGTTTCCCAACCTTTACATGCTTACACCTTTCTTCTTTTTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCTTCTCCGTAAACCATGTGTATTCATAGAAATCCAGTTCTTCTTCTTCTTCTTCTTTTATCTTCTCCGAAACATCTCAAACGATTAAAGGGCATGTCGTTGGGCAAAAAAAAAACCGTGTGTTAAAATTTATTCGGGGGATAAGAAAAGGAGAAAGTGAGGAAAAAAAGAAGCAGCTGATTCTGATAAGTGATCTTTCTATTTGATAAATGATGGATCATACAAAATTTTAAGAGTACTATAAAAAGTTTCTTATCAAAATATTTTCTAGTCAACAAAAAAGAATTTTTGCTGAAAAAAATTTTTTTTTTTTTTTGAAATTCCAGATGTTTAGTTCATCCAGAATTCTGAATTCTGGAGGATGTGATGATTCAGAATTTGATTCATAATTAGAGAGTACAGAACATCGAGAGACGCAGAGAACAAATTGGAGGATGAGAAGATAAGAAAAGAATTTGTCATAATTGATAAGAAAATTTTGGGGAAAAATGCACAATTTTGCGAAATTCCGGGTAATTTTTGTTGACAAGAATTTCAAGGTACTGTAGGTCGTAGTATTGAAGACATTTCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAAGGCACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACA</canonical>
            <polymorphic>ATACCAGATGACGTCACAGATGCTTCTATTCTGAATTTAAAAAAAAACCAAGAAGATAAAATCTCACCTTGTTTACGGTTTCCCAACCTTTACATGCTTACACCTTTCTTCTTTTTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCTTCTCCGTAAACCATGTGTATTCATAGAAATCCAGTTCTTCTTCTTCTTCTTCTTTTATCTTCTCCGAAACATCTCAAACGATTAAAGGGCATGTCGTTGGGCAAAAAAAAAACCGTGTGTTAAAATTTATTCGGGGGATAAGAAAAGGAGAAAGTGAGGAAAAAAAGAAGCAGCTGATTCTGATAAGTGATCTTTCTATTTGATAAATGATGGATCATACAAAATTTTAAGAGTACTATAAAAAGTTTCTTATCAAAATATTTTCTAGTCAACAAAAAAGAATTTTTGCTGAAAAAAATTTTTTTTTTTTTTTGAAATTCCAGATGTTTAGTTCATCCAGAATTCKGAATTCTGGAGGATGTGATGATTCAGAATTTGATTCATAATTAGAGAGTACAGAACATCGAGAGACGCAGAGAACAAATTGGAGGATGAGAAGATAAGAAAAGAATTTGTCATAATTGATAAGAAAATTTTGGGGAAAAATGCACAATTTTGCGAAATTCCGGGTAATTTTTGTTGACAAGAATTTCAAGGTACTGTAGGTCGTAGTATTGAAGACATTTCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAAGGCACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGATCATACAAAATTTTAAGAGTA</pcr_primer_p1>
		<pcr_primer_p2>TGACAAATTCTTTTCTTATCTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGGATCATACAAAATTTTAAGAGTACTATAAAAAGTTTCTTATCAAAATATTTTCTAGTCAACAAAAAAGAATTTTTGCTGAAAAAAATTTTTTTTTTTTTTTGAAATTCCAGATGTTTAGTTCATCCAGAATTCTGAATTCTGGAGGATGTGATGATTCAGAATTTGATTCATAATTAGAGAGTACAGAACATCGAGAGACGCAGAGAACAAATTGGAGGATGAGAAGATAAGAAAAGAATTTGTCA</canonical_amplicon>
		<polymorphic_amplicon>TGGATCATACAAAATTTTAAGAGTACTATAAAAAGTTTCTTATCAAAATATTTTCTAGTCAACAAAAAAGAATTTTTGCTGAAAAAAATTTTTTTTTTTTTTTGAAATTCCAGATGTTTAGTTCATCCAGAATTCKGAATTCTGGAGGATGTGATGATTCAGAATTTGATTCATAATTAGAGAGTACAGAACATCGAGAGACGCAGAGAACAAATTGGAGGATGAGAAGATAAGAAAAGAATTTGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3428</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>97972</contig_pos>
        <strand>+</strand>
        <context>TAATTAGAGA[G/T]TACAGAACAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTGAATTCTGGAGGATGTGATGATTCAGAATTTGATTCATAATTAGAGA</left_flank>
        <right_flank>TACAGAACATCGAGAGACGCAGAGAACAAATTGGAGGATGAGAAGATAAG</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAGAAGATAAAATCTCACCTTGTTTACGGTTTCCCAACCTTTACATGCTTACACCTTTCTTCTTTTTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCTTCTCCGTAAACCATGTGTATTCATAGAAATCCAGTTCTTCTTCTTCTTCTTCTTTTATCTTCTCCGAAACATCTCAAACGATTAAAGGGCATGTCGTTGGGCAAAAAAAAAACCGTGTGTTAAAATTTATTCGGGGGATAAGAAAAGGAGAAAGTGAGGAAAAAAAGAAGCAGCTGATTCTGATAAGTGATCTTTCTATTTGATAAATGATGGATCATACAAAATTTTAAGAGTACTATAAAAAGTTTCTTATCAAAATATTTTCTAGTCAACAAAAAAGAATTTTTGCTGAAAAAAATTTTTTTTTTTTTTTGAAATTCCAGATGTTTAGTTCATCCAGAATTCTGAATTCTGGAGGATGTGATGATTCAGAATTTGATTCATAATTAGAGAGTACAGAACATCGAGAGACGCAGAGAACAAATTGGAGGATGAGAAGATAAGAAAAGAATTTGTCATAATTGATAAGAAAATTTTGGGGAAAAATGCACAATTTTGCGAAATTCCGGGTAATTTTTGTTGACAAGAATTTCAAGGTACTGTAGGTCGTAGTATTGAAGACATTTCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAAGGCACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACAAACTCAAATTTCATTATTTCGAAAAATTTGGACCAGAAATATTTTGGA</canonical>
            <polymorphic>CAAGAAGATAAAATCTCACCTTGTTTACGGTTTCCCAACCTTTACATGCTTACACCTTTCTTCTTTTTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCTTCTCCGTAAACCATGTGTATTCATAGAAATCCAGTTCTTCTTCTTCTTCTTCTTTTATCTTCTCCGAAACATCTCAAACGATTAAAGGGCATGTCGTTGGGCAAAAAAAAAACCGTGTGTTAAAATTTATTCGGGGGATAAGAAAAGGAGAAAGTGAGGAAAAAAAGAAGCAGCTGATTCTGATAAGTGATCTTTCTATTTGATAAATGATGGATCATACAAAATTTTAAGAGTACTATAAAAAGTTTCTTATCAAAATATTTTCTAGTCAACAAAAAAGAATTTTTGCTGAAAAAAATTTTTTTTTTTTTTTGAAATTCCAGATGTTTAGTTCATCCAGAATTCTGAATTCTGGAGGATGTGATGATTCAGAATTTGATTCATAATTAGAGAKTACAGAACATCGAGAGACGCAGAGAACAAATTGGAGGATGAGAAGATAAGAAAAGAATTTGTCATAATTGATAAGAAAATTTTGGGGAAAAATGCACAATTTTGCGAAATTCCGGGTAATTTTTGTTGACAAGAATTTCAAGGTACTGTAGGTCGTAGTATTGAAGACATTTCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAAGGCACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACAAACTCAAATTTCATTATTTCGAAAAATTTGGACCAGAAATATTTTGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>356 340 161 143</canonical_bands>
                <polymorphic_bands>356 340 304</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>501 338 161</canonical_bands>
                <polymorphic_bands>662 338</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGATCATACAAAATTTTAAGAGTA</pcr_primer_p1>
		<pcr_primer_p2>TGACAAATTCTTTTCTTATCTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGGATCATACAAAATTTTAAGAGTACTATAAAAAGTTTCTTATCAAAATATTTTCTAGTCAACAAAAAAGAATTTTTGCTGAAAAAAATTTTTTTTTTTTTTTGAAATTCCAGATGTTTAGTTCATCCAGAATTCTGAATTCTGGAGGATGTGATGATTCAGAATTTGATTCATAATTAGAGAGTACAGAACATCGAGAGACGCAGAGAACAAATTGGAGGATGAGAAGATAAGAAAAGAATTTGTCA</canonical_amplicon>
		<polymorphic_amplicon>TGGATCATACAAAATTTTAAGAGTACTATAAAAAGTTTCTTATCAAAATATTTTCTAGTCAACAAAAAAGAATTTTTGCTGAAAAAAATTTTTTTTTTTTTTTGAAATTCCAGATGTTTAGTTCATCCAGAATTCTGAATTCTGGAGGATGTGATGATTCAGAATTTGATTCATAATTAGAGAKTACAGAACATCGAGAGACGCAGAGAACAAATTGGAGGATGAGAAGATAAGAAAAGAATTTGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3430</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>98191</contig_pos>
        <strand></strand>
        <context>AACTTTTTTT[C/T]AAAGGAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTT</left_flank>
        <right_flank>AAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTGTGTTAAAATTTATTCGGGGGATAAGAAAAGGAGAAAGTGAGGAAAAAAAGAAGCAGCTGATTCTGATAAGTGATCTTTCTATTTGATAAATGATGGATCATACAAAATTTTAAGAGTACTATAAAAAGTTTCTTATCAAAATATTTTCTAGTCAACAAAAAAGAATTTTTGCTGAAAAAAATTTTTTTTTTTTTTTGAAATTCCAGATGTTTAGTTCATCCAGAATTCTGAATTCTGGAGGATGTGATGATTCAGAATTTGATTCATAATTAGAGAGTACAGAACATCGAGAGACGCAGAGAACAAATTGGAGGATGAGAAGATAAGAAAAGAATTTGTCATAATTGATAAGAAAATTTTGGGGAAAAATGCACAATTTTGCGAAATTCCGGGTAATTTTTGTTGACAAGAATTTCAAGGTACTGTAGGTCGTAGTATTGAAGACATTTCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAAGGCACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACAAACTCAAATTTCATTATTTCGAAAAATTTGGACCAGAAATATTTTGGAAAAAATCGAAAATTTTAAAAAATTGATTAACTAAACAGTCATAGAAAATCCTCACCAAAAGCTTTGATCAAAAAACGGATCCAAGTGGGCGGAGCCAATGAAAAGTATTCTCAAAATTCTCAGAAGTTCAAGTGTACTAACTGTATGCAATACTAAATAATTTCAAACAATTTGGTTTTTTGTGCACATGAAAACGGGTCGATGCTCGAAACCTACAGA</canonical>
            <polymorphic>CGTGTGTTAAAATTTATTCGGGGGATAAGAAAAGGAGAAAGTGAGGAAAAAAAGAAGCAGCTGATTCTGATAAGTGATCTTTCTATTTGATAAATGATGGATCATACAAAATTTTAAGAGTACTATAAAAAGTTTCTTATCAAAATATTTTCTAGTCAACAAAAAAGAATTTTTGCTGAAAAAAATTTTTTTTTTTTTTTGAAATTCCAGATGTTTAGTTCATCCAGAATTCTGAATTCTGGAGGATGTGATGATTCAGAATTTGATTCATAATTAGAGAGTACAGAACATCGAGAGACGCAGAGAACAAATTGGAGGATGAGAAGATAAGAAAAGAATTTGTCATAATTGATAAGAAAATTTTGGGGAAAAATGCACAATTTTGCGAAATTCCGGGTAATTTTTGTTGACAAGAATTTCAAGGTACTGTAGGTCGTAGTATTGAAGACATTTCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTYAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAAGGCACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACAAACTCAAATTTCATTATTTCGAAAAATTTGGACCAGAAATATTTTGGAAAAAATCGAAAATTTTAAAAAATTGATTAACTAAACAGTCATAGAAAATCCTCACCAAAAGCTTTGATCAAAAAACGGATCCAAGTGGGCGGAGCCAATGAAAAGTATTCTCAAAATTCTCAGAAGTTCAAGTGTACTAACTGTATGCAATACTAAATAATTTCAAACAATTTGGTTTTTTGTGCACATGAAAACGGGTCGATGCTCGAAACCTACAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTAGGTCGTAGTATTGAAGACA</pcr_primer_p1>
		<pcr_primer_p2>TGAGGATTTTCTATGACTGTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>409</pcr_amplicon_size>
		<canonical_amplicon>CTGTAGGTCGTAGTATTGAAGACATTTCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAAGGCACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACAAACTCAAATTTCATTATTTCGAAAAATTTGGACCAGAAATATTTTGGAAAAAATCGAAAATTTTAAAAAATTGATTAACTAAACAGTCATAGAAAATCCTCA</canonical_amplicon>
		<polymorphic_amplicon>CTGTAGGTCGTAGTATTGAAGACATTTCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTYAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAAGGCACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACAAACTCAAATTTCATTATTTCGAAAAATTTGGACCAGAAATATTTTGGAAAAAATCGAAAATTTTAAAAAATTGATTAACTAAACAGTCATAGAAAATCCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3431</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>99464</contig_pos>
        <strand>+</strand>
        <context>ATTGGATCAT[C/T]TTTTCCAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTTGACGCCTCTGCCTTTCAGACGGTTGGCAACCGGAATTGGATCAT</left_flank>
        <right_flank>TTTTCCAGTTCCTTTAAATGTTGACGCACATACAATGATGACTTTTTTGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATACCATTCCCCATCAATTCGGCGCAATCCAATGTGATAGGCATATGGTTCCCGAATTTGCGGAGTTCTTTTGACGATTTCAAAAACGAATTGATGCTTGTCTAGCGTGAATTCCGATGCCAAATAGGAAGTATTCCAACGAAGCTGACAGGAAGCAAGCGCAGCGAACCATACAGCCGACATTCCGACTGGTTGGATGCAGGTACCGTAGGATTGACCGGGAGTGCGGTATTGGTACCAATTGGAGCTTGGGCAGAAGCAATTTACTGAAATTACATGAAATGGGTGGAACAAAGATTTCATATTTTGAAATCGTGGTACAAACCTTCCAAGAGTGTATTTTCAATCAGTGTCATATTCGCATCTTGCTTGAAACTTAATCCGGGGCTTGAAATCTTTGCCAACTCCTCCACAACCTTCTCATCTCCCTGATCGTAGGCAATCGTCAGAATTTTGACGCCTCTGCCTTTCAGACGGTTGGCAACCGGAATTGGATCATTTTTTCCAGTTCCTTTAAATGTTGACGCACATACAATGATGACTTTTTTGTAATGTGATCTGTTAGAACCGAAACTTTCCGAATATAGTAAATTCTGAGCCGCCTGCAGGCCATGAGCCACATATGATGTTGAATCTTCGGAAATTTCGGACATGGTTGAGTAGAAGTTTAGCACATCATTGTTTTTTGGCCAATCATAGTTCAAGTGAGCATCAACGGTGGCGTTGGAGTTATAAGTGACCATTCCGATTCGTGTAGTTTTTGGATTCGATGGGTTGATACCAATTTGAGCGTCACTGAAGATTGAGGCAAGGTTCGCCGAGATCTGGAAATTGATTTTTTGATTAAAAAAAAAGTCCAATGTGTAGAATCCTGGAATTCTCATGGAGAATTTATAAAGTTACAAGTGTTTGAAGTAGAATTGTATAGTTATCTTAGAAAACGGGATTTTCGATTATTACTCAATGAGGAAGTTAATTAGAAGTTAATTAGAATTCAATT</canonical>
            <polymorphic>ATACCATTCCCCATCAATTCGGCGCAATCCAATGTGATAGGCATATGGTTCCCGAATTTGCGGAGTTCTTTTGACGATTTCAAAAACGAATTGATGCTTGTCTAGCGTGAATTCCGATGCCAAATAGGAAGTATTCCAACGAAGCTGACAGGAAGCAAGCGCAGCGAACCATACAGCCGACATTCCGACTGGTTGGATGCAGGTACCGTAGGATTGACCGGGAGTGCGGTATTGGTACCAATTGGAGCTTGGGCAGAAGCAATTTACTGAAATTACATGAAATGGGTGGAACAAAGATTTCATATTTTGAAATCGTGGTACAAACCTTCCAAGAGTGTATTTTCAATCAGTGTCATATTCGCATCTTGCTTGAAACTTAATCCGGGGCTTGAAATCTTTGCCAACTCCTCCACAACCTTCTCATCTCCCTGATCGTAGGCAATCGTCAGAATTTTGACGCCTCTGCCTTTCAGACGGTTGGCAACCGGAATTGGATCATYTTTTCCAGTTCCTTTAAATGTTGACGCACATACAATGATGACTTTTTTGTAATGTGATCTGTTAGAACCGAAACTTTCCGAATATAGTAAATTCTGAGCCGCCTGCAGGCCATGAGCCACATATGATGTTGAATCTTCGGAAATTTCGGACATGGTTGAGTAGAAGTTTAGCACATCATTGTTTTTTGGCCAATCATAGTTCAAGTGAGCATCAACGGTGGCGTTGGAGTTATAAGTGACCATTCCGATTCGTGTAGTTTTTGGATTCGATGGGTTGATACCAATTTGAGCGTCACTGAAGATTGAGGCAAGGTTCGCCGAGATCTGGAAATTGATTTTTTGATTAAAAAAAAAGTCCAATGTGTAGAATCCTGGAATTCTCATGGAGAATTTATAAAGTTACAAGTGTTTGAAGTAGAATTGTATAGTTATCTTAGAAAACGGGATTTTCGATTATTACTCAATGAGGAAGTTAATTAGAAGTTAATTAGAATTCAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACCTTCCAAGAGTGTATTTTC</pcr_primer_p1>
		<pcr_primer_p2>TCGGTTCTAACAGATCACATTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACCTTCCAAGAGTGTATTTTCAATCAGTGTCATATTCGCATCTTGCTTGAAACTTAATCCGGGGCTTGAAATCTTTGCCAACTCCTCCACAACCTTCTCATCTCCCTGATCGTAGGCAATCGTCAGAATTTTGACGCCTCTGCCTTTCAGACGGTTGGCAACCGGAATTGGATCATTTTTTCCAGTTCCTTTAAATGTTGACGCACATACAATGATGACTTTTTTGTAATGTGATCTGTTAGAACCGA</canonical_amplicon>
		<polymorphic_amplicon>AAACCTTCCAAGAGTGTATTTTCAATCAGTGTCATATTCGCATCTTGCTTGAAACTTAATCCGGGGCTTGAAATCTTTGCCAACTCCTCCACAACCTTCTCATCTCCCTGATCGTAGGCAATCGTCAGAATTTTGACGCCTCTGCCTTTCAGACGGTTGGCAACCGGAATTGGATCATYTTTTCCAGTTCCTTTAAATGTTGACGCACATACAATGATGACTTTTTTGTAATGTGATCTGTTAGAACCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3432</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>99423</contig_pos>
        <strand>+</strand>
        <context>GAATTTTGAC[G/T]CCTCTGCCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCCACAACCTTCTCATCTCCCTGATCGTAGGCAATCGTCAGAATTTTGAC</left_flank>
        <right_flank>CCTCTGCCTTTCAGACGGTTGGCAACCGGAATTGGATCATTTTTTCCAGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATAATCTCTGACCGGAAGTAGTCCAGTTGGTTGGTCCCAATACCATTCCCCATCAATTCGGCGCAATCCAATGTGATAGGCATATGGTTCCCGAATTTGCGGAGTTCTTTTGACGATTTCAAAAACGAATTGATGCTTGTCTAGCGTGAATTCCGATGCCAAATAGGAAGTATTCCAACGAAGCTGACAGGAAGCAAGCGCAGCGAACCATACAGCCGACATTCCGACTGGTTGGATGCAGGTACCGTAGGATTGACCGGGAGTGCGGTATTGGTACCAATTGGAGCTTGGGCAGAAGCAATTTACTGAAATTACATGAAATGGGTGGAACAAAGATTTCATATTTTGAAATCGTGGTACAAACCTTCCAAGAGTGTATTTTCAATCAGTGTCATATTCGCATCTTGCTTGAAACTTAATCCGGGGCTTGAAATCTTTGCCAACTCCTCCACAACCTTCTCATCTCCCTGATCGTAGGCAATCGTCAGAATTTTGACGCCTCTGCCTTTCAGACGGTTGGCAACCGGAATTGGATCATTTTTTCCAGTTCCTTTAAATGTTGACGCACATACAATGATGACTTTTTTGTAATGTGATCTGTTAGAACCGAAACTTTCCGAATATAGTAAATTCTGAGCCGCCTGCAGGCCATGAGCCACATATGATGTTGAATCTTCGGAAATTTCGGACATGGTTGAGTAGAAGTTTAGCACATCATTGTTTTTTGGCCAATCATAGTTCAAGTGAGCATCAACGGTGGCGTTGGAGTTATAAGTGACCATTCCGATTCGTGTAGTTTTTGGATTCGATGGGTTGATACCAATTTGAGCGTCACTGAAGATTGAGGCAAGGTTCGCCGAGATCTGGAAATTGATTTTTTGATTAAAAAAAAAGTCCAATGTGTAGAATCCTGGAATTCTCATGGAGAATTTATAAAGTTACAAGTGTTTGAAGTAGAATTGTATAGTTATCTTAGAAAACGGGATTTTCGATTATTA</canonical>
            <polymorphic>TTATAATCTCTGACCGGAAGTAGTCCAGTTGGTTGGTCCCAATACCATTCCCCATCAATTCGGCGCAATCCAATGTGATAGGCATATGGTTCCCGAATTTGCGGAGTTCTTTTGACGATTTCAAAAACGAATTGATGCTTGTCTAGCGTGAATTCCGATGCCAAATAGGAAGTATTCCAACGAAGCTGACAGGAAGCAAGCGCAGCGAACCATACAGCCGACATTCCGACTGGTTGGATGCAGGTACCGTAGGATTGACCGGGAGTGCGGTATTGGTACCAATTGGAGCTTGGGCAGAAGCAATTTACTGAAATTACATGAAATGGGTGGAACAAAGATTTCATATTTTGAAATCGTGGTACAAACCTTCCAAGAGTGTATTTTCAATCAGTGTCATATTCGCATCTTGCTTGAAACTTAATCCGGGGCTTGAAATCTTTGCCAACTCCTCCACAACCTTCTCATCTCCCTGATCGTAGGCAATCGTCAGAATTTTGACKCCTCTGCCTTTCAGACGGTTGGCAACCGGAATTGGATCATTTTTTCCAGTTCCTTTAAATGTTGACGCACATACAATGATGACTTTTTTGTAATGTGATCTGTTAGAACCGAAACTTTCCGAATATAGTAAATTCTGAGCCGCCTGCAGGCCATGAGCCACATATGATGTTGAATCTTCGGAAATTTCGGACATGGTTGAGTAGAAGTTTAGCACATCATTGTTTTTTGGCCAATCATAGTTCAAGTGAGCATCAACGGTGGCGTTGGAGTTATAAGTGACCATTCCGATTCGTGTAGTTTTTGGATTCGATGGGTTGATACCAATTTGAGCGTCACTGAAGATTGAGGCAAGGTTCGCCGAGATCTGGAAATTGATTTTTTGATTAAAAAAAAAGTCCAATGTGTAGAATCCTGGAATTCTCATGGAGAATTTATAAAGTTACAAGTGTTTGAAGTAGAATTGTATAGTTATCTTAGAAAACGGGATTTTCGATTATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACCTTCCAAGAGTGTATTTTC</pcr_primer_p1>
		<pcr_primer_p2>TCGGTTCTAACAGATCACATTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACCTTCCAAGAGTGTATTTTCAATCAGTGTCATATTCGCATCTTGCTTGAAACTTAATCCGGGGCTTGAAATCTTTGCCAACTCCTCCACAACCTTCTCATCTCCCTGATCGTAGGCAATCGTCAGAATTTTGACGCCTCTGCCTTTCAGACGGTTGGCAACCGGAATTGGATCATTTTTTCCAGTTCCTTTAAATGTTGACGCACATACAATGATGACTTTTTTGTAATGTGATCTGTTAGAACCGA</canonical_amplicon>
		<polymorphic_amplicon>AAACCTTCCAAGAGTGTATTTTCAATCAGTGTCATATTCGCATCTTGCTTGAAACTTAATCCGGGGCTTGAAATCTTTGCCAACTCCTCCACAACCTTCTCATCTCCCTGATCGTAGGCAATCGTCAGAATTTTGACKCCTCTGCCTTTCAGACGGTTGGCAACCGGAATTGGATCATTTTTTCCAGTTCCTTTAAATGTTGACGCACATACAATGATGACTTTTTTGTAATGTGATCTGTTAGAACCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3433</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>99354</contig_pos>
        <strand>+</strand>
        <context>ATCCGGGGCT[C/T]GAAATCTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCAATCAGTGTCATATTCGCATCTTGCTTGAAACTTAATCCGGGGCT</left_flank>
        <right_flank>GAAATCTTTGCCAACTCCTCCACAACCTTCTCATCTCCCTGATCGTAGGC</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGAATTTTCAAAGTTCATCCCAACCGATAGTTTCTTCGACTGACTTGGATAATCGTATCCCCAATTTTTATAATCTCTGACCGGAAGTAGTCCAGTTGGTTGGTCCCAATACCATTCCCCATCAATTCGGCGCAATCCAATGTGATAGGCATATGGTTCCCGAATTTGCGGAGTTCTTTTGACGATTTCAAAAACGAATTGATGCTTGTCTAGCGTGAATTCCGATGCCAAATAGGAAGTATTCCAACGAAGCTGACAGGAAGCAAGCGCAGCGAACCATACAGCCGACATTCCGACTGGTTGGATGCAGGTACCGTAGGATTGACCGGGAGTGCGGTATTGGTACCAATTGGAGCTTGGGCAGAAGCAATTTACTGAAATTACATGAAATGGGTGGAACAAAGATTTCATATTTTGAAATCGTGGTACAAACCTTCCAAGAGTGTATTTTCAATCAGTGTCATATTCGCATCTTGCTTGAAACTTAATCCGGGGCTTGAAATCTTTGCCAACTCCTCCACAACCTTCTCATCTCCCTGATCGTAGGCAATCGTCAGAATTTTGACGCCTCTGCCTTTCAGACGGTTGGCAACCGGAATTGGATCATTTTTTCCAGTTCCTTTAAATGTTGACGCACATACAATGATGACTTTTTTGTAATGTGATCTGTTAGAACCGAAACTTTCCGAATATAGTAAATTCTGAGCCGCCTGCAGGCCATGAGCCACATATGATGTTGAATCTTCGGAAATTTCGGACATGGTTGAGTAGAAGTTTAGCACATCATTGTTTTTTGGCCAATCATAGTTCAAGTGAGCATCAACGGTGGCGTTGGAGTTATAAGTGACCATTCCGATTCGTGTAGTTTTTGGATTCGATGGGTTGATACCAATTTGAGCGTCACTGAAGATTGAGGCAAGGTTCGCCGAGATCTGGAAATTGATTTTTTGATTAAAAAAAAAGTCCAATGTGTAGAATCCTGGAATTCTCATGGAGAA</canonical>
            <polymorphic>CCAGAATTTTCAAAGTTCATCCCAACCGATAGTTTCTTCGACTGACTTGGATAATCGTATCCCCAATTTTTATAATCTCTGACCGGAAGTAGTCCAGTTGGTTGGTCCCAATACCATTCCCCATCAATTCGGCGCAATCCAATGTGATAGGCATATGGTTCCCGAATTTGCGGAGTTCTTTTGACGATTTCAAAAACGAATTGATGCTTGTCTAGCGTGAATTCCGATGCCAAATAGGAAGTATTCCAACGAAGCTGACAGGAAGCAAGCGCAGCGAACCATACAGCCGACATTCCGACTGGTTGGATGCAGGTACCGTAGGATTGACCGGGAGTGCGGTATTGGTACCAATTGGAGCTTGGGCAGAAGCAATTTACTGAAATTACATGAAATGGGTGGAACAAAGATTTCATATTTTGAAATCGTGGTACAAACCTTCCAAGAGTGTATTTTCAATCAGTGTCATATTCGCATCTTGCTTGAAACTTAATCCGGGGCTYGAAATCTTTGCCAACTCCTCCACAACCTTCTCATCTCCCTGATCGTAGGCAATCGTCAGAATTTTGACGCCTCTGCCTTTCAGACGGTTGGCAACCGGAATTGGATCATTTTTTCCAGTTCCTTTAAATGTTGACGCACATACAATGATGACTTTTTTGTAATGTGATCTGTTAGAACCGAAACTTTCCGAATATAGTAAATTCTGAGCCGCCTGCAGGCCATGAGCCACATATGATGTTGAATCTTCGGAAATTTCGGACATGGTTGAGTAGAAGTTTAGCACATCATTGTTTTTTGGCCAATCATAGTTCAAGTGAGCATCAACGGTGGCGTTGGAGTTATAAGTGACCATTCCGATTCGTGTAGTTTTTGGATTCGATGGGTTGATACCAATTTGAGCGTCACTGAAGATTGAGGCAAGGTTCGCCGAGATCTGGAAATTGATTTTTTGATTAAAAAAAAAGTCCAATGTGTAGAATCCTGGAATTCTCATGGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACCTTCCAAGAGTGTATTTTC</pcr_primer_p1>
		<pcr_primer_p2>TCGGTTCTAACAGATCACATTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACCTTCCAAGAGTGTATTTTCAATCAGTGTCATATTCGCATCTTGCTTGAAACTTAATCCGGGGCTTGAAATCTTTGCCAACTCCTCCACAACCTTCTCATCTCCCTGATCGTAGGCAATCGTCAGAATTTTGACGCCTCTGCCTTTCAGACGGTTGGCAACCGGAATTGGATCATTTTTTCCAGTTCCTTTAAATGTTGACGCACATACAATGATGACTTTTTTGTAATGTGATCTGTTAGAACCGA</canonical_amplicon>
		<polymorphic_amplicon>AAACCTTCCAAGAGTGTATTTTCAATCAGTGTCATATTCGCATCTTGCTTGAAACTTAATCCGGGGCTYGAAATCTTTGCCAACTCCTCCACAACCTTCTCATCTCCCTGATCGTAGGCAATCGTCAGAATTTTGACGCCTCTGCCTTTCAGACGGTTGGCAACCGGAATTGGATCATTTTTTCCAGTTCCTTTAAATGTTGACGCACATACAATGATGACTTTTTTGTAATGTGATCTGTTAGAACCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3434</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>99048</contig_pos>
        <strand>+</strand>
        <context>ACGATTTCAA[A/C]AACGAATTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTGATAGGCATATGGTTCCCGAATTTGCGGAGTTCTTTTGACGATTTCAA</left_flank>
        <right_flank>AACGAATTGATGCTTGTCTAGCGTGAATTCCGATGCCAAATAGGAAGTAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATCCAAGTGGGCGGAGCCAATGAAAAGTATTCTCAAAATTCTCAGAAGTTCAAGTGTACTAACTGTATGCAATACTAAATAATTTCAAACAATTTGGTTTTTTGTGCACATGAAAACGGGTCGATGCTCGAAACCTACAGAGAATGTGTGTTAAGTGGTTTATTGAAAAAATAAAGAGTTAAAAAAATAAAATCAATGGTCATCAACACTTGCATCACAATAGTTATCAGTATCACAGGTAGAGGTTTCACAAACATAATTGGATGGGAACCTCGGGTCCACATTCTTCCATTCCATCCATTTTCCAGAATTTTCAAAGTTCATCCCAACCGATAGTTTCTTCGACTGACTTGGATAATCGTATCCCCAATTTTTATAATCTCTGACCGGAAGTAGTCCAGTTGGTTGGTCCCAATACCATTCCCCATCAATTCGGCGCAATCCAATGTGATAGGCATATGGTTCCCGAATTTGCGGAGTTCTTTTGACGATTTCAAAAACGAATTGATGCTTGTCTAGCGTGAATTCCGATGCCAAATAGGAAGTATTCCAACGAAGCTGACAGGAAGCAAGCGCAGCGAACCATACAGCCGACATTCCGACTGGTTGGATGCAGGTACCGTAGGATTGACCGGGAGTGCGGTATTGGTACCAATTGGAGCTTGGGCAGAAGCAATTTACTGAAATTACATGAAATGGGTGGAACAAAGATTTCATATTTTGAAATCGTGGTACAAACCTTCCAAGAGTGTATTTTCAATCAGTGTCATATTCGCATCTTGCTTGAAACTTAATCCGGGGCTTGAAATCTTTGCCAACTCCTCCACAACCTTCTCATCTCCCTGATCGTAGGCAATCGTCAGAATTTTGACGCCTCTGCCTTTCAGACGGTTGGCAACCGGAATTGGATCATTTTTTCCAGTTCCTTTAAATGTTGACGCACATACAATGATGACTTTTTTGTAATGTGATCTGTTAGAACCGAAACTTTCCGAATA</canonical>
            <polymorphic>GGATCCAAGTGGGCGGAGCCAATGAAAAGTATTCTCAAAATTCTCAGAAGTTCAAGTGTACTAACTGTATGCAATACTAAATAATTTCAAACAATTTGGTTTTTTGTGCACATGAAAACGGGTCGATGCTCGAAACCTACAGAGAATGTGTGTTAAGTGGTTTATTGAAAAAATAAAGAGTTAAAAAAATAAAATCAATGGTCATCAACACTTGCATCACAATAGTTATCAGTATCACAGGTAGAGGTTTCACAAACATAATTGGATGGGAACCTCGGGTCCACATTCTTCCATTCCATCCATTTTCCAGAATTTTCAAAGTTCATCCCAACCGATAGTTTCTTCGACTGACTTGGATAATCGTATCCCCAATTTTTATAATCTCTGACCGGAAGTAGTCCAGTTGGTTGGTCCCAATACCATTCCCCATCAATTCGGCGCAATCCAATGTGATAGGCATATGGTTCCCGAATTTGCGGAGTTCTTTTGACGATTTCAAMAACGAATTGATGCTTGTCTAGCGTGAATTCCGATGCCAAATAGGAAGTATTCCAACGAAGCTGACAGGAAGCAAGCGCAGCGAACCATACAGCCGACATTCCGACTGGTTGGATGCAGGTACCGTAGGATTGACCGGGAGTGCGGTATTGGTACCAATTGGAGCTTGGGCAGAAGCAATTTACTGAAATTACATGAAATGGGTGGAACAAAGATTTCATATTTTGAAATCGTGGTACAAACCTTCCAAGAGTGTATTTTCAATCAGTGTCATATTCGCATCTTGCTTGAAACTTAATCCGGGGCTTGAAATCTTTGCCAACTCCTCCACAACCTTCTCATCTCCCTGATCGTAGGCAATCGTCAGAATTTTGACGCCTCTGCCTTTCAGACGGTTGGCAACCGGAATTGGATCATTTTTTCCAGTTCCTTTAAATGTTGACGCACATACAATGATGACTTTTTTGTAATGTGATCTGTTAGAACCGAAACTTTCCGAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGATAGGCATATGGTTCC</pcr_primer_p1>
		<pcr_primer_p2>TGTAATTTCAGTAAATTGCTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TGTGATAGGCATATGGTTCCCGAATTTGCGGAGTTCTTTTGACGATTTCAAAAACGAATTGATGCTTGTCTAGCGTGAATTCCGATGCCAAATAGGAAGTATTCCAACGAAGCTGACAGGAAGCAAGCGCAGCGAACCATACAGCCGACATTCCGACTGGTTGGATGCAGGTACCGTAGGATTGACCGGGAGTGCGGTATTGGTACCAATTGGAGCTTGGGCAGAAGCAATTTACTGAAATTACA</canonical_amplicon>
		<polymorphic_amplicon>TGTGATAGGCATATGGTTCCCGAATTTGCGGAGTTCTTTTGACGATTTCAAMAACGAATTGATGCTTGTCTAGCGTGAATTCCGATGCCAAATAGGAAGTATTCCAACGAAGCTGACAGGAAGCAAGCGCAGCGAACCATACAGCCGACATTCCGACTGGTTGGATGCAGGTACCGTAGGATTGACCGGGAGTGCGGTATTGGTACCAATTGGAGCTTGGGCAGAAGCAATTTACTGAAATTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3435</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>99033</contig_pos>
        <strand>+</strand>
        <context>TGCGGAGTTC[G/T]TTTGACGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGGCGCAATCCAATGTGATAGGCATATGGTTCCCGAATTTGCGGAGTTC</left_flank>
        <right_flank>TTTGACGATTTCAAAAACGAATTGATGCTTGTCTAGCGTGAATTCCGATG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTGATCAAAAAACGGATCCAAGTGGGCGGAGCCAATGAAAAGTATTCTCAAAATTCTCAGAAGTTCAAGTGTACTAACTGTATGCAATACTAAATAATTTCAAACAATTTGGTTTTTTGTGCACATGAAAACGGGTCGATGCTCGAAACCTACAGAGAATGTGTGTTAAGTGGTTTATTGAAAAAATAAAGAGTTAAAAAAATAAAATCAATGGTCATCAACACTTGCATCACAATAGTTATCAGTATCACAGGTAGAGGTTTCACAAACATAATTGGATGGGAACCTCGGGTCCACATTCTTCCATTCCATCCATTTTCCAGAATTTTCAAAGTTCATCCCAACCGATAGTTTCTTCGACTGACTTGGATAATCGTATCCCCAATTTTTATAATCTCTGACCGGAAGTAGTCCAGTTGGTTGGTCCCAATACCATTCCCCATCAATTCGGCGCAATCCAATGTGATAGGCATATGGTTCCCGAATTTGCGGAGTTCTTTTGACGATTTCAAAAACGAATTGATGCTTGTCTAGCGTGAATTCCGATGCCAAATAGGAAGTATTCCAACGAAGCTGACAGGAAGCAAGCGCAGCGAACCATACAGCCGACATTCCGACTGGTTGGATGCAGGTACCGTAGGATTGACCGGGAGTGCGGTATTGGTACCAATTGGAGCTTGGGCAGAAGCAATTTACTGAAATTACATGAAATGGGTGGAACAAAGATTTCATATTTTGAAATCGTGGTACAAACCTTCCAAGAGTGTATTTTCAATCAGTGTCATATTCGCATCTTGCTTGAAACTTAATCCGGGGCTTGAAATCTTTGCCAACTCCTCCACAACCTTCTCATCTCCCTGATCGTAGGCAATCGTCAGAATTTTGACGCCTCTGCCTTTCAGACGGTTGGCAACCGGAATTGGATCATTTTTTCCAGTTCCTTTAAATGTTGACGCACATACAATGATGACTTTTTTGTAATGTGATCTGTTAGAACC</canonical>
            <polymorphic>CTTTGATCAAAAAACGGATCCAAGTGGGCGGAGCCAATGAAAAGTATTCTCAAAATTCTCAGAAGTTCAAGTGTACTAACTGTATGCAATACTAAATAATTTCAAACAATTTGGTTTTTTGTGCACATGAAAACGGGTCGATGCTCGAAACCTACAGAGAATGTGTGTTAAGTGGTTTATTGAAAAAATAAAGAGTTAAAAAAATAAAATCAATGGTCATCAACACTTGCATCACAATAGTTATCAGTATCACAGGTAGAGGTTTCACAAACATAATTGGATGGGAACCTCGGGTCCACATTCTTCCATTCCATCCATTTTCCAGAATTTTCAAAGTTCATCCCAACCGATAGTTTCTTCGACTGACTTGGATAATCGTATCCCCAATTTTTATAATCTCTGACCGGAAGTAGTCCAGTTGGTTGGTCCCAATACCATTCCCCATCAATTCGGCGCAATCCAATGTGATAGGCATATGGTTCCCGAATTTGCGGAGTTCKTTTGACGATTTCAAAAACGAATTGATGCTTGTCTAGCGTGAATTCCGATGCCAAATAGGAAGTATTCCAACGAAGCTGACAGGAAGCAAGCGCAGCGAACCATACAGCCGACATTCCGACTGGTTGGATGCAGGTACCGTAGGATTGACCGGGAGTGCGGTATTGGTACCAATTGGAGCTTGGGCAGAAGCAATTTACTGAAATTACATGAAATGGGTGGAACAAAGATTTCATATTTTGAAATCGTGGTACAAACCTTCCAAGAGTGTATTTTCAATCAGTGTCATATTCGCATCTTGCTTGAAACTTAATCCGGGGCTTGAAATCTTTGCCAACTCCTCCACAACCTTCTCATCTCCCTGATCGTAGGCAATCGTCAGAATTTTGACGCCTCTGCCTTTCAGACGGTTGGCAACCGGAATTGGATCATTTTTTCCAGTTCCTTTAAATGTTGACGCACATACAATGATGACTTTTTTGTAATGTGATCTGTTAGAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTCATCCCAACCGATAGT</pcr_primer_p1>
		<pcr_primer_p2>CTTCGTTGGAATACTTCCTATTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>AGTTCATCCCAACCGATAGTTTCTTCGACTGACTTGGATAATCGTATCCCCAATTTTTATAATCTCTGACCGGAAGTAGTCCAGTTGGTTGGTCCCAATACCATTCCCCATCAATTCGGCGCAATCCAATGTGATAGGCATATGGTTCCCGAATTTGCGGAGTTCTTTTGACGATTTCAAAAACGAATTGATGCTTGTCTAGCGTGAATTCCGATGCCAAATAGGAAGTATTCCAACGAAG</canonical_amplicon>
		<polymorphic_amplicon>AGTTCATCCCAACCGATAGTTTCTTCGACTGACTTGGATAATCGTATCCCCAATTTTTATAATCTCTGACCGGAAGTAGTCCAGTTGGTTGGTCCCAATACCATTCCCCATCAATTCGGCGCAATCCAATGTGATAGGCATATGGTTCCCGAATTTGCGGAGTTCKTTTGACGATTTCAAAAACGAATTGATGCTTGTCTAGCGTGAATTCCGATGCCAAATAGGAAGTATTCCAACGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3436</snp_id>
        <super_contig>c001401072.Contig1</super_contig>
        <contig_pos>32379</contig_pos>
        <strand></strand>
        <context>TACCTAACAG[A/G]ATTCTTGGCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGACTAGTTTTTTTTTGAAGATTACAACACCAAGATACTGTACCTAACAG</left_flank>
        <right_flank>ATTCTTGGCCCTCTCTGGGTGACTCCAGTGTCTTTGCCGCTTGCCTCTCG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCATCAACCCATCCACAAGTGTTAACTATCATTCCACCTAGTTTAGCTGCTGGATTCTCTTCTATCTTAAATAGAATTTTCGAGATTACATTCTCTGTATTTTATGGTCATACCTGACCATTCATCGTGGTGGCAAGCGCCTTGAGGAGGGCTTCGTAAAGTGGAAGATTCTCTCCTGGAGATGTGTGTCCGAACTAAAATATGTTCTTAAATCCAACAAAAGAAACTAAGCTTACATTTAAAACCAAAGGCATGTTCCTCTCAAACCCATCAACAAAATCTGCGGTTTTTTGTACCAACATAGCGCTAATGGATCCGGGAACCGATATATTGTTCTGTCCAACATCAAGATCCACCAAAATGGGAGTTCCTCCTTTTCGAACTGCATAGTTACACAGGATTCGAGATACTGTAGTTTTACCAACATCTGTTGGTCCCACTGAAAGCTTGACTAGTTTTTTTTTGAAGATTACAACACCAAGATACTGTACCTAACAGAATTCTTGGCCCTCTCTGGGTGACTCCAGTGTCTTTGCCGCTTGCCTCTCGATCTTTCCGTAGTTTTTCTAGAGTTGCATGGATGTTCAGGTAGACGACCATTGCAGTACTCTCAGATGATATATAGGCACTTTCTGTACCTCCTTTTATTTCGATAGTGCCACCAGTCCATGAGAAAACTGCTGCGCGGAACTCTGGAAAATCATTTTTTTAAGATTTGAAAGTGCTTATGGGAGCTTCACAAGGATTTGAACTTGCGGGATAGTAAAATCCGTAATAGAAGGGTCCCTAACTTTTAGCCGATTCATCTCGGTTACTGTCAAAGATATCAAAAAGTTGTCAATTGATAAATTGTTTATCATATCCTGACCAACATTTTATCCGTTGAGACTTTTTTGATATCTTGCATAGAAGGCGAGATAATTGAGCTCAAACTTGACAGTGTAAAGGCCCACTGGTTTTGGGGTAACCCAAAAAACCTCAACAACTCTACTGCCCTTT</canonical>
            <polymorphic>TCCATCAACCCATCCACAAGTGTTAACTATCATTCCACCTAGTTTAGCTGCTGGATTCTCTTCTATCTTAAATAGAATTTTCGAGATTACATTCTCTGTATTTTATGGTCATACCTGACCATTCATCGTGGTGGCAAGCGCCTTGAGGAGGGCTTCGTAAAGTGGAAGATTCTCTCCTGGAGATGTGTGTCCGAACTAAAATATGTTCTTAAATCCAACAAAAGAAACTAAGCTTACATTTAAAACCAAAGGCATGTTCCTCTCAAACCCATCAACAAAATCTGCGGTTTTTTGTACCAACATAGCGCTAATGGATCCGGGAACCGATATATTGTTCTGTCCAACATCAAGATCCACCAAAATGGGAGTTCCTCCTTTTCGAACTGCATAGTTACACAGGATTCGAGATACTGTAGTTTTACCAACATCTGTTGGTCCCACTGAAAGCTTGACTAGTTTTTTTTTGAAGATTACAACACCAAGATACTGTACCTAACAGRATTCTTGGCCCTCTCTGGGTGACTCCAGTGTCTTTGCCGCTTGCCTCTCGATCTTTCCGTAGTTTTTCTAGAGTTGCATGGATGTTCAGGTAGACGACCATTGCAGTACTCTCAGATGATATATAGGCACTTTCTGTACCTCCTTTTATTTCGATAGTGCCACCAGTCCATGAGAAAACTGCTGCGCGGAACTCTGGAAAATCATTTTTTTAAGATTTGAAAGTGCTTATGGGAGCTTCACAAGGATTTGAACTTGCGGGATAGTAAAATCCGTAATAGAAGGGTCCCTAACTTTTAGCCGATTCATCTCGGTTACTGTCAAAGATATCAAAAAGTTGTCAATTGATAAATTGTTTATCATATCCTGACCAACATTTTATCCGTTGAGACTTTTTTGATATCTTGCATAGAAGGCGAGATAATTGAGCTCAAACTTGACAGTGTAAAGGCCCACTGGTTTTGGGGTAACCCAAAAAACCTCAACAACTCTACTGCCCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>501 424 75</canonical_bands>
                <polymorphic_bands>925 75</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>424 341 80 75 72 8</canonical_bands>
                <polymorphic_bands>765 80 75 72 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATATTGTTCTGTCCAACATCAA</pcr_primer_p1>
		<pcr_primer_p2>AACTCTAGAAAAACTACGGAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TATATTGTTCTGTCCAACATCAAGATCCACCAAAATGGGAGTTCCTCCTTTTCGAACTGCATAGTTACACAGGATTCGAGATACTGTAGTTTTACCAACATCTGTTGGTCCCACTGAAAGCTTGACTAGTTTTTTTTTGAAGATTACAACACCAAGATACTGTACCTAACAGAATTCTTGGCCCTCTCTGGGTGACTCCAGTGTCTTTGCCGCTTGCCTCTCGATCTTTCCGTAGTTTTTCTAGAGTT</canonical_amplicon>
		<polymorphic_amplicon>TATATTGTTCTGTCCAACATCAAGATCCACCAAAATGGGAGTTCCTCCTTTTCGAACTGCATAGTTACACAGGATTCGAGATACTGTAGTTTTACCAACATCTGTTGGTCCCACTGAAAGCTTGACTAGTTTTTTTTTGAAGATTACAACACCAAGATACTGTACCTAACAGRATTCTTGGCCCTCTCTGGGTGACTCCAGTGTCTTTGCCGCTTGCCTCTCGATCTTTCCGTAGTTTTTCTAGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3437</snp_id>
        <super_contig>c001401072.Contig1</super_contig>
        <contig_pos>32502</contig_pos>
        <strand>+</strand>
        <context>CAGATGATAT[A/G]TAGGCACYTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTGCATGGATGTTCAGGTAGACGACCATTGCAGTACTCTCAGATGATAT</left_flank>
        <right_flank>TAGGCACTTTCTGTACCTCCTTTTATTTCGATAGTGCCACCAGTCCATGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCGTGGTGGCAAGCGCCTTGAGGAGGGCTTCGTAAAGTGGAAGATTCTCTCCTGGAGATGTGTGTCCGAACTAAAATATGTTCTTAAATCCAACAAAAGAAACTAAGCTTACATTTAAAACCAAAGGCATGTTCCTCTCAAACCCATCAACAAAATCTGCGGTTTTTTGTACCAACATAGCGCTAATGGATCCGGGAACCGATATATTGTTCTGTCCAACATCAAGATCCACCAAAATGGGAGTTCCTCCTTTTCGAACTGCATAGTTACACAGGATTCGAGATACTGTAGTTTTACCAACATCTGTTGGTCCCACTGAAAGCTTGACTAGTTTTTTTTTGAAGATTACAACACCAAGATACTGTACCTAACAGAATTCTTGGCCCTCTCTGGGTGACTCCAGTGTCTTTGCCGCTTGCCTCTCGATCTTTCCGTAGTTTTTCTAGAGTTGCATGGATGTTCAGGTAGACGACCATTGCAGTACTCTCAGATGATATATAGGCACTTTCTGTACCTCCTTTTATTTCGATAGTGCCACCAGTCCATGAGAAAACTGCTGCGCGGAACTCTGGAAAATCATTTTTTTAAGATTTGAAAGTGCTTATGGGAGCTTCACAAGGATTTGAACTTGCGGGATAGTAAAATCCGTAATAGAAGGGTCCCTAACTTTTAGCCGATTCATCTCGGTTACTGTCAAAGATATCAAAAAGTTGTCAATTGATAAATTGTTTATCATATCCTGACCAACATTTTATCCGTTGAGACTTTTTTGATATCTTGCATAGAAGGCGAGATAATTGAGCTCAAACTTGACAGTGTAAAGGCCCACTGGTTTTGGGGTAACCCAAAAAACCTCAACAACTCTACTGCCCTTTACTTCTTCAAAAAAAAAACTCACTGGCTGGAAAAACATATTTCTGATTTGGTATCAGTTCGGTCCCGAAGATTTCGACATATCCATTTAAAAGTTCCAAGGAAATGTCTGAACAATTGTTGGC</canonical>
            <polymorphic>CATCGTGGTGGCAAGCGCCTTGAGGAGGGCTTCGTAAAGTGGAAGATTCTCTCCTGGAGATGTGTGTCCGAACTAAAATATGTTCTTAAATCCAACAAAAGAAACTAAGCTTACATTTAAAACCAAAGGCATGTTCCTCTCAAACCCATCAACAAAATCTGCGGTTTTTTGTACCAACATAGCGCTAATGGATCCGGGAACCGATATATTGTTCTGTCCAACATCAAGATCCACCAAAATGGGAGTTCCTCCTTTTCGAACTGCATAGTTACACAGGATTCGAGATACTGTAGTTTTACCAACATCTGTTGGTCCCACTGAAAGCTTGACTAGTTTTTTTTTGAAGATTACAACACCAAGATACTGTACCTAACAGAATTCTTGGCCCTCTCTGGGTGACTCCAGTGTCTTTGCCGCTTGCCTCTCGATCTTTCCGTAGTTTTTCTAGAGTTGCATGGATGTTCAGGTAGACGACCATTGCAGTACTCTCAGATGATATRTAGGCACTTTCTGTACCTCCTTTTATTTCGATAGTGCCACCAGTCCATGAGAAAACTGCTGCGCGGAACTCTGGAAAATCATTTTTTTAAGATTTGAAAGTGCTTATGGGAGCTTCACAAGGATTTGAACTTGCGGGATAGTAAAATCCGTAATAGAAGGGTCCCTAACTTTTAGCCGATTCATCTCGGTTACTGTCAAAGATATCAAAAAGTTGTCAATTGATAAATTGTTTATCATATCCTGACCAACATTTTATCCGTTGAGACTTTTTTGATATCTTGCATAGAAGGCGAGATAATTGAGCTCAAACTTGACAGTGTAAAGGCCCACTGGTTTTGGGGTAACCCAAAAAACCTCAACAACTCTACTGCCCTTTACTTCTTCAAAAAAAAAACTCACTGGCTGGAAAAACATATTTCTGATTTGGTATCAGTTCGGTCCCGAAGATTTCGACATATCCATTTAAAAGTTCCAAGGAAATGTCTGAACAATTGTTGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCCACTGAAAGCTTGACTA</pcr_primer_p1>
		<pcr_primer_p2>CAGCAGTTTTCTCATGGACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCCACTGAAAGCTTGACTAGTTTTTTTTTGAAGATTACAACACCAAGATACTGTACCTAACAGAATTCTTGGCCCTCTCTGGGTGACTCCAGTGTCTTTGCCGCTTGCCTCTCGATCTTTCCGTAGTTTTTCTAGAGTTGCATGGATGTTCAGGTAGACGACCATTGCAGTACTCTCAGATGATATATAGGCACTTTCTGTACCTCCTTTTATTTCGATAGTGCCACCAGTCCATGAGAAAACTGCTG</canonical_amplicon>
		<polymorphic_amplicon>TCCCACTGAAAGCTTGACTAGTTTTTTTTTGAAGATTACAACACCAAGATACTGTACCTAACAGAATTCTTGGCCCTCTCTGGGTGACTCCAGTGTCTTTGCCGCTTGCCTCTCGATCTTTCCGTAGTTTTTCTAGAGTTGCATGGATGTTCAGGTAGACGACCATTGCAGTACTCTCAGATGATATRTAGGCACTTTCTGTACCTCCTTTTATTTCGATAGTGCCACCAGTCCATGAGAAAACTGCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3438</snp_id>
        <super_contig>c001401072.Contig1</super_contig>
        <contig_pos>32510</contig_pos>
        <strand>+</strand>
        <context>ATRTAGGCAC[C/T]TTCTGTACCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATGTTCAGGTAGACGACCATTGCAGTACTCTCAGATGATATATAGGCAC</left_flank>
        <right_flank>TTCTGTACCTCCTTTTATTTCGATAGTGCCACCAGTCCATGAGAAAACTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCAAGCGCCTTGAGGAGGGCTTCGTAAAGTGGAAGATTCTCTCCTGGAGATGTGTGTCCGAACTAAAATATGTTCTTAAATCCAACAAAAGAAACTAAGCTTACATTTAAAACCAAAGGCATGTTCCTCTCAAACCCATCAACAAAATCTGCGGTTTTTTGTACCAACATAGCGCTAATGGATCCGGGAACCGATATATTGTTCTGTCCAACATCAAGATCCACCAAAATGGGAGTTCCTCCTTTTCGAACTGCATAGTTACACAGGATTCGAGATACTGTAGTTTTACCAACATCTGTTGGTCCCACTGAAAGCTTGACTAGTTTTTTTTTGAAGATTACAACACCAAGATACTGTACCTAACAGAATTCTTGGCCCTCTCTGGGTGACTCCAGTGTCTTTGCCGCTTGCCTCTCGATCTTTCCGTAGTTTTTCTAGAGTTGCATGGATGTTCAGGTAGACGACCATTGCAGTACTCTCAGATGATATATAGGCACTTTCTGTACCTCCTTTTATTTCGATAGTGCCACCAGTCCATGAGAAAACTGCTGCGCGGAACTCTGGAAAATCATTTTTTTAAGATTTGAAAGTGCTTATGGGAGCTTCACAAGGATTTGAACTTGCGGGATAGTAAAATCCGTAATAGAAGGGTCCCTAACTTTTAGCCGATTCATCTCGGTTACTGTCAAAGATATCAAAAAGTTGTCAATTGATAAATTGTTTATCATATCCTGACCAACATTTTATCCGTTGAGACTTTTTTGATATCTTGCATAGAAGGCGAGATAATTGAGCTCAAACTTGACAGTGTAAAGGCCCACTGGTTTTGGGGTAACCCAAAAAACCTCAACAACTCTACTGCCCTTTACTTCTTCAAAAAAAAAACTCACTGGCTGGAAAAACATATTTCTGATTTGGTATCAGTTCGGTCCCGAAGATTTCGACATATCCATTTAAAAGTTCCAAGGAAATGTCTGAACAATTGTTGGCGACAAATC</canonical>
            <polymorphic>TGGCAAGCGCCTTGAGGAGGGCTTCGTAAAGTGGAAGATTCTCTCCTGGAGATGTGTGTCCGAACTAAAATATGTTCTTAAATCCAACAAAAGAAACTAAGCTTACATTTAAAACCAAAGGCATGTTCCTCTCAAACCCATCAACAAAATCTGCGGTTTTTTGTACCAACATAGCGCTAATGGATCCGGGAACCGATATATTGTTCTGTCCAACATCAAGATCCACCAAAATGGGAGTTCCTCCTTTTCGAACTGCATAGTTACACAGGATTCGAGATACTGTAGTTTTACCAACATCTGTTGGTCCCACTGAAAGCTTGACTAGTTTTTTTTTGAAGATTACAACACCAAGATACTGTACCTAACAGAATTCTTGGCCCTCTCTGGGTGACTCCAGTGTCTTTGCCGCTTGCCTCTCGATCTTTCCGTAGTTTTTCTAGAGTTGCATGGATGTTCAGGTAGACGACCATTGCAGTACTCTCAGATGATATATAGGCACYTTCTGTACCTCCTTTTATTTCGATAGTGCCACCAGTCCATGAGAAAACTGCTGCGCGGAACTCTGGAAAATCATTTTTTTAAGATTTGAAAGTGCTTATGGGAGCTTCACAAGGATTTGAACTTGCGGGATAGTAAAATCCGTAATAGAAGGGTCCCTAACTTTTAGCCGATTCATCTCGGTTACTGTCAAAGATATCAAAAAGTTGTCAATTGATAAATTGTTTATCATATCCTGACCAACATTTTATCCGTTGAGACTTTTTTGATATCTTGCATAGAAGGCGAGATAATTGAGCTCAAACTTGACAGTGTAAAGGCCCACTGGTTTTGGGGTAACCCAAAAAACCTCAACAACTCTACTGCCCTTTACTTCTTCAAAAAAAAAACTCACTGGCTGGAAAAACATATTTCTGATTTGGTATCAGTTCGGTCCCGAAGATTTCGACATATCCATTTAAAAGTTCCAAGGAAATGTCTGAACAATTGTTGGCGACAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCCACTGAAAGCTTGACTA</pcr_primer_p1>
		<pcr_primer_p2>CAGCAGTTTTCTCATGGACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCCACTGAAAGCTTGACTAGTTTTTTTTTGAAGATTACAACACCAAGATACTGTACCTAACAGAATTCTTGGCCCTCTCTGGGTGACTCCAGTGTCTTTGCCGCTTGCCTCTCGATCTTTCCGTAGTTTTTCTAGAGTTGCATGGATGTTCAGGTAGACGACCATTGCAGTACTCTCAGATGATATATAGGCACTTTCTGTACCTCCTTTTATTTCGATAGTGCCACCAGTCCATGAGAAAACTGCTG</canonical_amplicon>
		<polymorphic_amplicon>TCCCACTGAAAGCTTGACTAGTTTTTTTTTGAAGATTACAACACCAAGATACTGTACCTAACAGAATTCTTGGCCCTCTCTGGGTGACTCCAGTGTCTTTGCCGCTTGCCTCTCGATCTTTCCGTAGTTTTTCTAGAGTTGCATGGATGTTCAGGTAGACGACCATTGCAGTACTCTCAGATGATATATAGGCACYTTCTGTACCTCCTTTTATTTCGATAGTGCCACCAGTCCATGAGAAAACTGCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3439</snp_id>
        <super_contig>c001401072.Contig1</super_contig>
        <contig_pos>32526</contig_pos>
        <strand>+</strand>
        <context>TACCTCCTTT[G/T]ATTTCGATAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACCATTGCAGTACTCTCAGATGATATATAGGCACTTTCTGTACCTCCTTT</left_flank>
        <right_flank>ATTTCGATAGTGCCACCAGTCCATGAGAAAACTGCTGCGCGGAACTCTGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGGCTTCGTAAAGTGGAAGATTCTCTCCTGGAGATGTGTGTCCGAACTAAAATATGTTCTTAAATCCAACAAAAGAAACTAAGCTTACATTTAAAACCAAAGGCATGTTCCTCTCAAACCCATCAACAAAATCTGCGGTTTTTTGTACCAACATAGCGCTAATGGATCCGGGAACCGATATATTGTTCTGTCCAACATCAAGATCCACCAAAATGGGAGTTCCTCCTTTTCGAACTGCATAGTTACACAGGATTCGAGATACTGTAGTTTTACCAACATCTGTTGGTCCCACTGAAAGCTTGACTAGTTTTTTTTTGAAGATTACAACACCAAGATACTGTACCTAACAGAATTCTTGGCCCTCTCTGGGTGACTCCAGTGTCTTTGCCGCTTGCCTCTCGATCTTTCCGTAGTTTTTCTAGAGTTGCATGGATGTTCAGGTAGACGACCATTGCAGTACTCTCAGATGATATATAGGCACTTTCTGTACCTCCTTTTATTTCGATAGTGCCACCAGTCCATGAGAAAACTGCTGCGCGGAACTCTGGAAAATCATTTTTTTAAGATTTGAAAGTGCTTATGGGAGCTTCACAAGGATTTGAACTTGCGGGATAGTAAAATCCGTAATAGAAGGGTCCCTAACTTTTAGCCGATTCATCTCGGTTACTGTCAAAGATATCAAAAAGTTGTCAATTGATAAATTGTTTATCATATCCTGACCAACATTTTATCCGTTGAGACTTTTTTGATATCTTGCATAGAAGGCGAGATAATTGAGCTCAAACTTGACAGTGTAAAGGCCCACTGGTTTTGGGGTAACCCAAAAAACCTCAACAACTCTACTGCCCTTTACTTCTTCAAAAAAAAAACTCACTGGCTGGAAAAACATATTTCTGATTTGGTATCAGTTCGGTCCCGAAGATTTCGACATATCCATTTAAAAGTTCCAAGGAAATGTCTGAACAATTGTTGGCGACAAATCTCAATTCACAGCCTGA</canonical>
            <polymorphic>GAGGGCTTCGTAAAGTGGAAGATTCTCTCCTGGAGATGTGTGTCCGAACTAAAATATGTTCTTAAATCCAACAAAAGAAACTAAGCTTACATTTAAAACCAAAGGCATGTTCCTCTCAAACCCATCAACAAAATCTGCGGTTTTTTGTACCAACATAGCGCTAATGGATCCGGGAACCGATATATTGTTCTGTCCAACATCAAGATCCACCAAAATGGGAGTTCCTCCTTTTCGAACTGCATAGTTACACAGGATTCGAGATACTGTAGTTTTACCAACATCTGTTGGTCCCACTGAAAGCTTGACTAGTTTTTTTTTGAAGATTACAACACCAAGATACTGTACCTAACAGAATTCTTGGCCCTCTCTGGGTGACTCCAGTGTCTTTGCCGCTTGCCTCTCGATCTTTCCGTAGTTTTTCTAGAGTTGCATGGATGTTCAGGTAGACGACCATTGCAGTACTCTCAGATGATATATAGGCACTTTCTGTACCTCCTTTKATTTCGATAGTGCCACCAGTCCATGAGAAAACTGCTGCGCGGAACTCTGGAAAATCATTTTTTTAAGATTTGAAAGTGCTTATGGGAGCTTCACAAGGATTTGAACTTGCGGGATAGTAAAATCCGTAATAGAAGGGTCCCTAACTTTTAGCCGATTCATCTCGGTTACTGTCAAAGATATCAAAAAGTTGTCAATTGATAAATTGTTTATCATATCCTGACCAACATTTTATCCGTTGAGACTTTTTTGATATCTTGCATAGAAGGCGAGATAATTGAGCTCAAACTTGACAGTGTAAAGGCCCACTGGTTTTGGGGTAACCCAAAAAACCTCAACAACTCTACTGCCCTTTACTTCTTCAAAAAAAAAACTCACTGGCTGGAAAAACATATTTCTGATTTGGTATCAGTTCGGTCCCGAAGATTTCGACATATCCATTTAAAAGTTCCAAGGAAATGTCTGAACAATTGTTGGCGACAAATCTCAATTCACAGCCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACACCAAGATACTGTACCTAACA</pcr_primer_p1>
		<pcr_primer_p2>CCCATAAGCACTTTCAAATC</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>AACACCAAGATACTGTACCTAACAGAATTCTTGGCCCTCTCTGGGTGACTCCAGTGTCTTTGCCGCTTGCCTCTCGATCTTTCCGTAGTTTTTCTAGAGTTGCATGGATGTTCAGGTAGACGACCATTGCAGTACTCTCAGATGATATATAGGCACTTTCTGTACCTCCTTTTATTTCGATAGTGCCACCAGTCCATGAGAAAACTGCTGCGCGGAACTCTGGAAAATCATTTTTTTAAGATTTGAAAGTGCTTATGGG</canonical_amplicon>
		<polymorphic_amplicon>AACACCAAGATACTGTACCTAACAGAATTCTTGGCCCTCTCTGGGTGACTCCAGTGTCTTTGCCGCTTGCCTCTCGATCTTTCCGTAGTTTTTCTAGAGTTGCATGGATGTTCAGGTAGACGACCATTGCAGTACTCTCAGATGATATATAGGCACTTTCTGTACCTCCTTTKATTTCGATAGTGCCACCAGTCCATGAGAAAACTGCTGCGCGGAACTCTGGAAAATCATTTTTTTAAGATTTGAAAGTGCTTATGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3440</snp_id>
        <super_contig>c001401072.Contig1</super_contig>
        <contig_pos>32590</contig_pos>
        <strand>+</strand>
        <context>ATCATTTTTT[A/T]AWGATTTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CACCAGTCCATGAGAAAACTGCTGCGCGGAACTCTGGAAAATCATTTTTT</left_flank>
        <right_flank>AAGATTTGAAAGTGCTTATGGGAGCTTCACAAGGATTTGAACTTGCGGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCCAACAAAAGAAACTAAGCTTACATTTAAAACCAAAGGCATGTTCCTCTCAAACCCATCAACAAAATCTGCGGTTTTTTGTACCAACATAGCGCTAATGGATCCGGGAACCGATATATTGTTCTGTCCAACATCAAGATCCACCAAAATGGGAGTTCCTCCTTTTCGAACTGCATAGTTACACAGGATTCGAGATACTGTAGTTTTACCAACATCTGTTGGTCCCACTGAAAGCTTGACTAGTTTTTTTTTGAAGATTACAACACCAAGATACTGTACCTAACAGAATTCTTGGCCCTCTCTGGGTGACTCCAGTGTCTTTGCCGCTTGCCTCTCGATCTTTCCGTAGTTTTTCTAGAGTTGCATGGATGTTCAGGTAGACGACCATTGCAGTACTCTCAGATGATATATAGGCACTTTCTGTACCTCCTTTTATTTCGATAGTGCCACCAGTCCATGAGAAAACTGCTGCGCGGAACTCTGGAAAATCATTTTTTTAAGATTTGAAAGTGCTTATGGGAGCTTCACAAGGATTTGAACTTGCGGGATAGTAAAATCCGTAATAGAAGGGTCCCTAACTTTTAGCCGATTCATCTCGGTTACTGTCAAAGATATCAAAAAGTTGTCAATTGATAAATTGTTTATCATATCCTGACCAACATTTTATCCGTTGAGACTTTTTTGATATCTTGCATAGAAGGCGAGATAATTGAGCTCAAACTTGACAGTGTAAAGGCCCACTGGTTTTGGGGTAACCCAAAAAACCTCAACAACTCTACTGCCCTTTACTTCTTCAAAAAAAAAACTCACTGGCTGGAAAAACATATTTCTGATTTGGTATCAGTTCGGTCCCGAAGATTTCGACATATCCATTTAAAAGTTCCAAGGAAATGTCTGAACAATTGTTGGCGACAAATCTCAATTCACAGCCTGAGTTGAGATCGAACCTTTGAACCCGTTCGGTAAACATTTTGAGATCTGAAGATTTGAATGTTAAA</canonical>
            <polymorphic>AATCCAACAAAAGAAACTAAGCTTACATTTAAAACCAAAGGCATGTTCCTCTCAAACCCATCAACAAAATCTGCGGTTTTTTGTACCAACATAGCGCTAATGGATCCGGGAACCGATATATTGTTCTGTCCAACATCAAGATCCACCAAAATGGGAGTTCCTCCTTTTCGAACTGCATAGTTACACAGGATTCGAGATACTGTAGTTTTACCAACATCTGTTGGTCCCACTGAAAGCTTGACTAGTTTTTTTTTGAAGATTACAACACCAAGATACTGTACCTAACAGAATTCTTGGCCCTCTCTGGGTGACTCCAGTGTCTTTGCCGCTTGCCTCTCGATCTTTCCGTAGTTTTTCTAGAGTTGCATGGATGTTCAGGTAGACGACCATTGCAGTACTCTCAGATGATATATAGGCACTTTCTGTACCTCCTTTTATTTCGATAGTGCCACCAGTCCATGAGAAAACTGCTGCGCGGAACTCTGGAAAATCATTTTTTWAAGATTTGAAAGTGCTTATGGGAGCTTCACAAGGATTTGAACTTGCGGGATAGTAAAATCCGTAATAGAAGGGTCCCTAACTTTTAGCCGATTCATCTCGGTTACTGTCAAAGATATCAAAAAGTTGTCAATTGATAAATTGTTTATCATATCCTGACCAACATTTTATCCGTTGAGACTTTTTTGATATCTTGCATAGAAGGCGAGATAATTGAGCTCAAACTTGACAGTGTAAAGGCCCACTGGTTTTGGGGTAACCCAAAAAACCTCAACAACTCTACTGCCCTTTACTTCTTCAAAAAAAAAACTCACTGGCTGGAAAAACATATTTCTGATTTGGTATCAGTTCGGTCCCGAAGATTTCGACATATCCATTTAAAAGTTCCAAGGAAATGTCTGAACAATTGTTGGCGACAAATCTCAATTCACAGCCTGAGTTGAGATCGAACCTTTGAACCCGTTCGGTAAACATTTTGAGATCTGAAGATTTGAATGTTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>470 377 120 29 4</canonical_bands>
                <polymorphic_bands>847 120 29 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAGTCCATGAGAAAACTG</pcr_primer_p1>
		<pcr_primer_p2>GCAGTAGAGTTGTTGAGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>334</pcr_amplicon_size>
		<canonical_amplicon>ACCAGTCCATGAGAAAACTGCTGCGCGGAACTCTGGAAAATCATTTTTTTAAGATTTGAAAGTGCTTATGGGAGCTTCACAAGGATTTGAACTTGCGGGATAGTAAAATCCGTAATAGAAGGGTCCCTAACTTTTAGCCGATTCATCTCGGTTACTGTCAAAGATATCAAAAAGTTGTCAATTGATAAATTGTTTATCATATCCTGACCAACATTTTATCCGTTGAGACTTTTTTGATATCTTGCATAGAAGGCGAGATAATTGAGCTCAAACTTGACAGTGTAAAGGCCCACTGGTTTTGGGGTAACCCAAAAAACCTCAACAACTCTACTGC</canonical_amplicon>
		<polymorphic_amplicon>ACCAGTCCATGAGAAAACTGCTGCGCGGAACTCTGGAAAATCATTTTTTWAAGATTTGAAAGTGCTTATGGGAGCTTCACAAGGATTTGAACTTGCGGGATAGTAAAATCCGTAATAGAAGGGTCCCTAACTTTTAGCCGATTCATCTCGGTTACTGTCAAAGATATCAAAAAGTTGTCAATTGATAAATTGTTTATCATATCCTGACCAACATTTTATCCGTTGAGACTTTTTTGATATCTTGCATAGAAGGCGAGATAATTGAGCTCAAACTTGACAGTGTAAAGGCCCACTGGTTTTGGGGTAACCCAAAAAACCTCAACAACTCTACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3441</snp_id>
        <super_contig>c001401072.Contig1</super_contig>
        <contig_pos>32592</contig_pos>
        <strand>+</strand>
        <context>CATTTTTTWA[A/T]GATTTGAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCAGTCCATGAGAAAACTGCTGCGCGGAACTCTGGAAAATCATTTTTTTA</left_flank>
        <right_flank>GATTTGAAAGTGCTTATGGGAGCTTCACAAGGATTTGAACTTGCGGGATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAACAAAAGAAACTAAGCTTACATTTAAAACCAAAGGCATGTTCCTCTCAAACCCATCAACAAAATCTGCGGTTTTTTGTACCAACATAGCGCTAATGGATCCGGGAACCGATATATTGTTCTGTCCAACATCAAGATCCACCAAAATGGGAGTTCCTCCTTTTCGAACTGCATAGTTACACAGGATTCGAGATACTGTAGTTTTACCAACATCTGTTGGTCCCACTGAAAGCTTGACTAGTTTTTTTTTGAAGATTACAACACCAAGATACTGTACCTAACAGAATTCTTGGCCCTCTCTGGGTGACTCCAGTGTCTTTGCCGCTTGCCTCTCGATCTTTCCGTAGTTTTTCTAGAGTTGCATGGATGTTCAGGTAGACGACCATTGCAGTACTCTCAGATGATATATAGGCACTTTCTGTACCTCCTTTTATTTCGATAGTGCCACCAGTCCATGAGAAAACTGCTGCGCGGAACTCTGGAAAATCATTTTTTTAAGATTTGAAAGTGCTTATGGGAGCTTCACAAGGATTTGAACTTGCGGGATAGTAAAATCCGTAATAGAAGGGTCCCTAACTTTTAGCCGATTCATCTCGGTTACTGTCAAAGATATCAAAAAGTTGTCAATTGATAAATTGTTTATCATATCCTGACCAACATTTTATCCGTTGAGACTTTTTTGATATCTTGCATAGAAGGCGAGATAATTGAGCTCAAACTTGACAGTGTAAAGGCCCACTGGTTTTGGGGTAACCCAAAAAACCTCAACAACTCTACTGCCCTTTACTTCTTCAAAAAAAAAACTCACTGGCTGGAAAAACATATTTCTGATTTGGTATCAGTTCGGTCCCGAAGATTTCGACATATCCATTTAAAAGTTCCAAGGAAATGTCTGAACAATTGTTGGCGACAAATCTCAATTCACAGCCTGAGTTGAGATCGAACCTTTGAACCCGTTCGGTAAACATTTTGAGATCTGAAGATTTGAATGTTAAAAC</canonical>
            <polymorphic>TCCAACAAAAGAAACTAAGCTTACATTTAAAACCAAAGGCATGTTCCTCTCAAACCCATCAACAAAATCTGCGGTTTTTTGTACCAACATAGCGCTAATGGATCCGGGAACCGATATATTGTTCTGTCCAACATCAAGATCCACCAAAATGGGAGTTCCTCCTTTTCGAACTGCATAGTTACACAGGATTCGAGATACTGTAGTTTTACCAACATCTGTTGGTCCCACTGAAAGCTTGACTAGTTTTTTTTTGAAGATTACAACACCAAGATACTGTACCTAACAGAATTCTTGGCCCTCTCTGGGTGACTCCAGTGTCTTTGCCGCTTGCCTCTCGATCTTTCCGTAGTTTTTCTAGAGTTGCATGGATGTTCAGGTAGACGACCATTGCAGTACTCTCAGATGATATATAGGCACTTTCTGTACCTCCTTTTATTTCGATAGTGCCACCAGTCCATGAGAAAACTGCTGCGCGGAACTCTGGAAAATCATTTTTTTAWGATTTGAAAGTGCTTATGGGAGCTTCACAAGGATTTGAACTTGCGGGATAGTAAAATCCGTAATAGAAGGGTCCCTAACTTTTAGCCGATTCATCTCGGTTACTGTCAAAGATATCAAAAAGTTGTCAATTGATAAATTGTTTATCATATCCTGACCAACATTTTATCCGTTGAGACTTTTTTGATATCTTGCATAGAAGGCGAGATAATTGAGCTCAAACTTGACAGTGTAAAGGCCCACTGGTTTTGGGGTAACCCAAAAAACCTCAACAACTCTACTGCCCTTTACTTCTTCAAAAAAAAAACTCACTGGCTGGAAAAACATATTTCTGATTTGGTATCAGTTCGGTCCCGAAGATTTCGACATATCCATTTAAAAGTTCCAAGGAAATGTCTGAACAATTGTTGGCGACAAATCTCAATTCACAGCCTGAGTTGAGATCGAACCTTTGAACCCGTTCGGTAAACATTTTGAGATCTGAAGATTTGAATGTTAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>470 377 120 27 6</canonical_bands>
                <polymorphic_bands>847 120 27 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAGTCCATGAGAAAACTG</pcr_primer_p1>
		<pcr_primer_p2>GCAGTAGAGTTGTTGAGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>334</pcr_amplicon_size>
		<canonical_amplicon>ACCAGTCCATGAGAAAACTGCTGCGCGGAACTCTGGAAAATCATTTTTTTAAGATTTGAAAGTGCTTATGGGAGCTTCACAAGGATTTGAACTTGCGGGATAGTAAAATCCGTAATAGAAGGGTCCCTAACTTTTAGCCGATTCATCTCGGTTACTGTCAAAGATATCAAAAAGTTGTCAATTGATAAATTGTTTATCATATCCTGACCAACATTTTATCCGTTGAGACTTTTTTGATATCTTGCATAGAAGGCGAGATAATTGAGCTCAAACTTGACAGTGTAAAGGCCCACTGGTTTTGGGGTAACCCAAAAAACCTCAACAACTCTACTGC</canonical_amplicon>
		<polymorphic_amplicon>ACCAGTCCATGAGAAAACTGCTGCGCGGAACTCTGGAAAATCATTTTTTTAWGATTTGAAAGTGCTTATGGGAGCTTCACAAGGATTTGAACTTGCGGGATAGTAAAATCCGTAATAGAAGGGTCCCTAACTTTTAGCCGATTCATCTCGGTTACTGTCAAAGATATCAAAAAGTTGTCAATTGATAAATTGTTTATCATATCCTGACCAACATTTTATCCGTTGAGACTTTTTTGATATCTTGCATAGAAGGCGAGATAATTGAGCTCAAACTTGACAGTGTAAAGGCCCACTGGTTTTGGGGTAACCCAAAAAACCTCAACAACTCTACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3464</snp_id>
        <super_contig>c001401072.Contig1</super_contig>
        <contig_pos>98039</contig_pos>
        <strand>+</strand>
        <context>GCTTGCTTTG[G/T]TTTGAGGTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCAAAACTTTTTTTAGAATCAGCGTTTTGTTTATTTTGTAGCTTGCTTTG</left_flank>
        <right_flank>TTTGAGGTGTTACCTTTAATAGACCGGCACTGGATGAGAATTACCGTTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGCACAGATTCAAGTTCTGGAACGACAATCAATCGATATTTGAATGGATGTTCATAAAAAGATGTGTTGTTTCATCCATAACCAAGGCTATGCAAATCTCGGCCGCGGCCGGCCGTGGGCATGACCACCACTACAGTATACAAAAGTCTCACTTCCTTTTTTTCCCTTTATTTTTCCCCCCAAGAAGTTGTATAACTTGAGCCAATTTTTCTCGAAACTGTGTCATCTAAATGGCTCCGTTTTTCTGTATATTGCCTACTGTTCGACTAGGCAGATTTTTTTTCAGACGCTCGACACGGACTACACACGGAATACATTTTGTACAAGTTAGTTTTGTCTGAAAATTCCAGCATGGAATGCCCCAGAAACTAGTTTGGTTTAGAACGAAATGTATACATCAACACCTTTTGATATAAACGACCCAGCAACATAAACAAAGTGGAATCGTCAAAACTTTTTTTAGAATCAGCGTTTTGTTTATTTTGTAGCTTGCTTTGGTTTGAGGTGTTACCTTTAATAGACCGGCACTGGATGAGAATTACCGTTAAACATGTAATAGAAGGGCCTCTAACTTTGAGCCAATTTATCTCGGTTCGAGTGAAAGATATCAAGAATGGGTTAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAATTGCCACATTTTTGATATCTTGCATAGGAATTGAGATAATTGAGCTAAAACTTGACAGTGTAGGTTTCCTTCTATTACAGGTTATATGGCATTTCGATTTCTGAAAAAACGATATCAAGACTTTTCAAAAATTCTCAGAATGTTATCAGTAGATAATTTGTTGATATCACCTCCAGAAAATGAGATAAACCTGTCTGATTGCATGTGTCTTTTGTGAGGCGTACTGATTTCAAAAGATCCCAATTTTTGATTTTGCTCACTTTTCCCTGCCCTCACTTCCTCTCTCCAGCTTTAATAACTTCCTATCTATATTTTTCCACAGGGATCGAACTAAT</canonical>
            <polymorphic>TTTGCACAGATTCAAGTTCTGGAACGACAATCAATCGATATTTGAATGGATGTTCATAAAAAGATGTGTTGTTTCATCCATAACCAAGGCTATGCAAATCTCGGCCGCGGCCGGCCGTGGGCATGACCACCACTACAGTATACAAAAGTCTCACTTCCTTTTTTTCCCTTTATTTTTCCCCCCAAGAAGTTGTATAACTTGAGCCAATTTTTCTCGAAACTGTGTCATCTAAATGGCTCCGTTTTTCTGTATATTGCCTACTGTTCGACTAGGCAGATTTTTTTTCAGACGCTCGACACGGACTACACACGGAATACATTTTGTACAAGTTAGTTTTGTCTGAAAATTCCAGCATGGAATGCCCCAGAAACTAGTTTGGTTTAGAACGAAATGTATACATCAACACCTTTTGATATAAACGACCCAGCAACATAAACAAAGTGGAATCGTCAAAACTTTTTTTAGAATCAGCGTTTTGTTTATTTTGTAGCTTGCTTTGKTTTGAGGTGTTACCTTTAATAGACCGGCACTGGATGAGAATTACCGTTAAACATGTAATAGAAGGGCCTCTAACTTTGAGCCAATTTATCTCGGTTCGAGTGAAAGATATCAAGAATGGGTTAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAATTGCCACATTTTTGATATCTTGCATAGGAATTGAGATAATTGAGCTAAAACTTGACAGTGTAGGTTTCCTTCTATTACAGGTTATATGGCATTTCGATTTCTGAAAAAACGATATCAAGACTTTTCAAAAATTCTCAGAATGTTATCAGTAGATAATTTGTTGATATCACCTCCAGAAAATGAGATAAACCTGTCTGATTGCATGTGTCTTTTGTGAGGCGTACTGATTTCAAAAGATCCCAATTTTTGATTTTGCTCACTTTTCCCTGCCCTCACTTCCTCTCTCCAGCTTTAATAACTTCCTATCTATATTTTTCCACAGGGATCGAACTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGTGGAATCGTCAAAACTT</pcr_primer_p1>
		<pcr_primer_p2>AAAGCTGGAGAGAGGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>521</pcr_amplicon_size>
		<canonical_amplicon>AAAGTGGAATCGTCAAAACTTTTTTTAGAATCAGCGTTTTGTTTATTTTGTAGCTTGCTTTGGTTTGAGGTGTTACCTTTAATAGACCGGCACTGGATGAGAATTACCGTTAAACATGTAATAGAAGGGCCTCTAACTTTGAGCCAATTTATCTCGGTTCGAGTGAAAGATATCAAGAATGGGTTAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAATTGCCACATTTTTGATATCTTGCATAGGAATTGAGATAATTGAGCTAAAACTTGACAGTGTAGGTTTCCTTCTATTACAGGTTATATGGCATTTCGATTTCTGAAAAAACGATATCAAGACTTTTCAAAAATTCTCAGAATGTTATCAGTAGATAATTTGTTGATATCACCTCCAGAAAATGAGATAAACCTGTCTGATTGCATGTGTCTTTTGTGAGGCGTACTGATTTCAAAAGATCCCAATTTTTGATTTTGCTCACTTTTCCCTGCCCTCACTTCCTCTCTCCAGCTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAGTGGAATCGTCAAAACTTTTTTTAGAATCAGCGTTTTGTTTATTTTGTAGCTTGCTTTGKTTTGAGGTGTTACCTTTAATAGACCGGCACTGGATGAGAATTACCGTTAAACATGTAATAGAAGGGCCTCTAACTTTGAGCCAATTTATCTCGGTTCGAGTGAAAGATATCAAGAATGGGTTAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAATTGCCACATTTTTGATATCTTGCATAGGAATTGAGATAATTGAGCTAAAACTTGACAGTGTAGGTTTCCTTCTATTACAGGTTATATGGCATTTCGATTTCTGAAAAAACGATATCAAGACTTTTCAAAAATTCTCAGAATGTTATCAGTAGATAATTTGTTGATATCACCTCCAGAAAATGAGATAAACCTGTCTGATTGCATGTGTCTTTTGTGAGGCGTACTGATTTCAAAAGATCCCAATTTTTGATTTTGCTCACTTTTCCCTGCCCTCACTTCCTCTCTCCAGCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3465</snp_id>
        <super_contig>c001401072.Contig1</super_contig>
        <contig_pos>98319</contig_pos>
        <strand>+</strand>
        <context>AAAAACGATA[C/T]CAAGACTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCCTTCTATTACAGGTTATATGGCATTTCGATTTCTGAAAAAACGATA</left_flank>
        <right_flank>CAAGACTTTTCAAAAATTCTCAGAATGTTATCAGTAGATAATTTGTTGAT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTCAGACGCTCGACACGGACTACACACGGAATACATTTTGTACAAGTTAGTTTTGTCTGAAAATTCCAGCATGGAATGCCCCAGAAACTAGTTTGGTTTAGAACGAAATGTATACATCAACACCTTTTGATATAAACGACCCAGCAACATAAACAAAGTGGAATCGTCAAAACTTTTTTTAGAATCAGCGTTTTGTTTATTTTGTAGCTTGCTTTGGTTTGAGGTGTTACCTTTAATAGACCGGCACTGGATGAGAATTACCGTTAAACATGTAATAGAAGGGCCTCTAACTTTGAGCCAATTTATCTCGGTTCGAGTGAAAGATATCAAGAATGGGTTAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAATTGCCACATTTTTGATATCTTGCATAGGAATTGAGATAATTGAGCTAAAACTTGACAGTGTAGGTTTCCTTCTATTACAGGTTATATGGCATTTCGATTTCTGAAAAAACGATATCAAGACTTTTCAAAAATTCTCAGAATGTTATCAGTAGATAATTTGTTGATATCACCTCCAGAAAATGAGATAAACCTGTCTGATTGCATGTGTCTTTTGTGAGGCGTACTGATTTCAAAAGATCCCAATTTTTGATTTTGCTCACTTTTCCCTGCCCTCACTTCCTCTCTCCAGCTTTAATAACTTCCTATCTATATTTTTCCACAGGGATCGAACTAATGCGAAGTAGCGTGTCAGCTTCAAATTTATTTTCATGCGGCGTGATAATTGTTCTCTCACTGTGCTGCACTGAGATTGTATGCTTTTCCTATTCCTGACGTTCCTCCAAAAATCTGAAATTCCCATACCCCAAAAAAGGAAACATGAAAATTGAAAATTCCCAACAGATTTTTTTCCTTCCCTTTTTTCTCTTTTCCCCTGATTTTTTCCTATTGTTTGCACCTCTGACATAAACCTCCTAGCCGTCAACTTTGACTGAATTTACCTTGATTCCTGTAAAC</canonical>
            <polymorphic>TTTTTCAGACGCTCGACACGGACTACACACGGAATACATTTTGTACAAGTTAGTTTTGTCTGAAAATTCCAGCATGGAATGCCCCAGAAACTAGTTTGGTTTAGAACGAAATGTATACATCAACACCTTTTGATATAAACGACCCAGCAACATAAACAAAGTGGAATCGTCAAAACTTTTTTTAGAATCAGCGTTTTGTTTATTTTGTAGCTTGCTTTGGTTTGAGGTGTTACCTTTAATAGACCGGCACTGGATGAGAATTACCGTTAAACATGTAATAGAAGGGCCTCTAACTTTGAGCCAATTTATCTCGGTTCGAGTGAAAGATATCAAGAATGGGTTAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAATTGCCACATTTTTGATATCTTGCATAGGAATTGAGATAATTGAGCTAAAACTTGACAGTGTAGGTTTCCTTCTATTACAGGTTATATGGCATTTCGATTTCTGAAAAAACGATAYCAAGACTTTTCAAAAATTCTCAGAATGTTATCAGTAGATAATTTGTTGATATCACCTCCAGAAAATGAGATAAACCTGTCTGATTGCATGTGTCTTTTGTGAGGCGTACTGATTTCAAAAGATCCCAATTTTTGATTTTGCTCACTTTTCCCTGCCCTCACTTCCTCTCTCCAGCTTTAATAACTTCCTATCTATATTTTTCCACAGGGATCGAACTAATGCGAAGTAGCGTGTCAGCTTCAAATTTATTTTCATGCGGCGTGATAATTGTTCTCTCACTGTGCTGCACTGAGATTGTATGCTTTTCCTATTCCTGACGTTCCTCCAAAAATCTGAAATTCCCATACCCCAAAAAAGGAAACATGAAAATTGAAAATTCCCAACAGATTTTTTTCCTTCCCTTTTTTCTCTTTTCCCCTGATTTTTTCCTATTGTTTGCACCTCTGACATAAACCTCCTAGCCGTCAACTTTGACTGAATTTACCTTGATTCCTGTAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>450 328 97 73 52</canonical_bands>
                <polymorphic_bands>450 328 149 73</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>331 255 187 170 57</canonical_bands>
                <polymorphic_bands>331 255 227 187</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACCTTTAATAGACCGGCACT</pcr_primer_p1>
		<pcr_primer_p2>TATTAAAGCTGGAGAGAGGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>452</pcr_amplicon_size>
		<canonical_amplicon>TACCTTTAATAGACCGGCACTGGATGAGAATTACCGTTAAACATGTAATAGAAGGGCCTCTAACTTTGAGCCAATTTATCTCGGTTCGAGTGAAAGATATCAAGAATGGGTTAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAATTGCCACATTTTTGATATCTTGCATAGGAATTGAGATAATTGAGCTAAAACTTGACAGTGTAGGTTTCCTTCTATTACAGGTTATATGGCATTTCGATTTCTGAAAAAACGATATCAAGACTTTTCAAAAATTCTCAGAATGTTATCAGTAGATAATTTGTTGATATCACCTCCAGAAAATGAGATAAACCTGTCTGATTGCATGTGTCTTTTGTGAGGCGTACTGATTTCAAAAGATCCCAATTTTTGATTTTGCTCACTTTTCCCTGCCCTCACTTCCTCTCTCCAGCTTTAATA</canonical_amplicon>
		<polymorphic_amplicon>TACCTTTAATAGACCGGCACTGGATGAGAATTACCGTTAAACATGTAATAGAAGGGCCTCTAACTTTGAGCCAATTTATCTCGGTTCGAGTGAAAGATATCAAGAATGGGTTAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAATTGCCACATTTTTGATATCTTGCATAGGAATTGAGATAATTGAGCTAAAACTTGACAGTGTAGGTTTCCTTCTATTACAGGTTATATGGCATTTCGATTTCTGAAAAAACGATAYCAAGACTTTTCAAAAATTCTCAGAATGTTATCAGTAGATAATTTGTTGATATCACCTCCAGAAAATGAGATAAACCTGTCTGATTGCATGTGTCTTTTGTGAGGCGTACTGATTTCAAAAGATCCCAATTTTTGATTTTGCTCACTTTTCCCTGCCCTCACTTCCTCTCTCCAGCTTTAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3466</snp_id>
        <super_contig>c001401072.Contig1</super_contig>
        <contig_pos>98375</contig_pos>
        <strand></strand>
        <context>ttgatatcac[C/T]tcyagaaaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTTCAAAAATTCTCAGAATGTTATCAGTAGATAATTTGTTGATATCAC</left_flank>
        <right_flank>TCCAGAAAATGAGATAAACCTGTCTGATTGCATGTGTCTTTTGTGAGGCG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCTGAAAATTCCAGCATGGAATGCCCCAGAAACTAGTTTGGTTTAGAACGAAATGTATACATCAACACCTTTTGATATAAACGACCCAGCAACATAAACAAAGTGGAATCGTCAAAACTTTTTTTAGAATCAGCGTTTTGTTTATTTTGTAGCTTGCTTTGGTTTGAGGTGTTACCTTTAATAGACCGGCACTGGATGAGAATTACCGTTAAACATGTAATAGAAGGGCCTCTAACTTTGAGCCAATTTATCTCGGTTCGAGTGAAAGATATCAAGAATGGGTTAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAATTGCCACATTTTTGATATCTTGCATAGGAATTGAGATAATTGAGCTAAAACTTGACAGTGTAGGTTTCCTTCTATTACAGGTTATATGGCATTTCGATTTCTGAAAAAACGATATCAAGACTTTTCAAAAATTCTCAGAATGTTATCAGTAGATAATTTGTTGATATCACCTCCAGAAAATGAGATAAACCTGTCTGATTGCATGTGTCTTTTGTGAGGCGTACTGATTTCAAAAGATCCCAATTTTTGATTTTGCTCACTTTTCCCTGCCCTCACTTCCTCTCTCCAGCTTTAATAACTTCCTATCTATATTTTTCCACAGGGATCGAACTAATGCGAAGTAGCGTGTCAGCTTCAAATTTATTTTCATGCGGCGTGATAATTGTTCTCTCACTGTGCTGCACTGAGATTGTATGCTTTTCCTATTCCTGACGTTCCTCCAAAAATCTGAAATTCCCATACCCCAAAAAAGGAAACATGAAAATTGAAAATTCCCAACAGATTTTTTTCCTTCCCTTTTTTCTCTTTTCCCCTGATTTTTTCCTATTGTTTGCACCTCTGACATAAACCTCCTAGCCGTCAACTTTGACTGAATTTACCTTGATTCCTGTAAACGATATCAATCAGCGATCAACTAACAAAATATTTGTGATAACATGATAAACGTTTTG</canonical>
            <polymorphic>TGTCTGAAAATTCCAGCATGGAATGCCCCAGAAACTAGTTTGGTTTAGAACGAAATGTATACATCAACACCTTTTGATATAAACGACCCAGCAACATAAACAAAGTGGAATCGTCAAAACTTTTTTTAGAATCAGCGTTTTGTTTATTTTGTAGCTTGCTTTGGTTTGAGGTGTTACCTTTAATAGACCGGCACTGGATGAGAATTACCGTTAAACATGTAATAGAAGGGCCTCTAACTTTGAGCCAATTTATCTCGGTTCGAGTGAAAGATATCAAGAATGGGTTAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAATTGCCACATTTTTGATATCTTGCATAGGAATTGAGATAATTGAGCTAAAACTTGACAGTGTAGGTTTCCTTCTATTACAGGTTATATGGCATTTCGATTTCTGAAAAAACGATATCAAGACTTTTCAAAAATTCTCAGAATGTTATCAGTAGATAATTTGTTGATATCACYTCCAGAAAATGAGATAAACCTGTCTGATTGCATGTGTCTTTTGTGAGGCGTACTGATTTCAAAAGATCCCAATTTTTGATTTTGCTCACTTTTCCCTGCCCTCACTTCCTCTCTCCAGCTTTAATAACTTCCTATCTATATTTTTCCACAGGGATCGAACTAATGCGAAGTAGCGTGTCAGCTTCAAATTTATTTTCATGCGGCGTGATAATTGTTCTCTCACTGTGCTGCACTGAGATTGTATGCTTTTCCTATTCCTGACGTTCCTCCAAAAATCTGAAATTCCCATACCCCAAAAAAGGAAACATGAAAATTGAAAATTCCCAACAGATTTTTTTCCTTCCCTTTTTTCTCTTTTCCCCTGATTTTTTCCTATTGTTTGCACCTCTGACATAAACCTCCTAGCCGTCAACTTTGACTGAATTTACCTTGATTCCTGTAAACGATATCAATCAGCGATCAACTAACAAAATATTTGTGATAACATGATAAACGTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACCTTTAATAGACCGGCACT</pcr_primer_p1>
		<pcr_primer_p2>TATTAAAGCTGGAGAGAGGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>452</pcr_amplicon_size>
		<canonical_amplicon>TACCTTTAATAGACCGGCACTGGATGAGAATTACCGTTAAACATGTAATAGAAGGGCCTCTAACTTTGAGCCAATTTATCTCGGTTCGAGTGAAAGATATCAAGAATGGGTTAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAATTGCCACATTTTTGATATCTTGCATAGGAATTGAGATAATTGAGCTAAAACTTGACAGTGTAGGTTTCCTTCTATTACAGGTTATATGGCATTTCGATTTCTGAAAAAACGATATCAAGACTTTTCAAAAATTCTCAGAATGTTATCAGTAGATAATTTGTTGATATCACCTCCAGAAAATGAGATAAACCTGTCTGATTGCATGTGTCTTTTGTGAGGCGTACTGATTTCAAAAGATCCCAATTTTTGATTTTGCTCACTTTTCCCTGCCCTCACTTCCTCTCTCCAGCTTTAATA</canonical_amplicon>
		<polymorphic_amplicon>TACCTTTAATAGACCGGCACTGGATGAGAATTACCGTTAAACATGTAATAGAAGGGCCTCTAACTTTGAGCCAATTTATCTCGGTTCGAGTGAAAGATATCAAGAATGGGTTAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAATTGCCACATTTTTGATATCTTGCATAGGAATTGAGATAATTGAGCTAAAACTTGACAGTGTAGGTTTCCTTCTATTACAGGTTATATGGCATTTCGATTTCTGAAAAAACGATATCAAGACTTTTCAAAAATTCTCAGAATGTTATCAGTAGATAATTTGTTGATATCACYTCCAGAAAATGAGATAAACCTGTCTGATTGCATGTGTCTTTTGTGAGGCGTACTGATTTCAAAAGATCCCAATTTTTGATTTTGCTCACTTTTCCCTGCCCTCACTTCCTCTCTCCAGCTTTAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3467</snp_id>
        <super_contig>c001401072.Contig1</super_contig>
        <contig_pos>98378</contig_pos>
        <strand></strand>
        <context>atatcacytc[C/T]agaaaatgag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAAAAATTCTCAGAATGTTATCAGTAGATAATTTGTTGATATCACCTC</left_flank>
        <right_flank>AGAAAATGAGATAAACCTGTCTGATTGCATGTGTCTTTTGTGAGGCGTAC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAAAATTCCAGCATGGAATGCCCCAGAAACTAGTTTGGTTTAGAACGAAATGTATACATCAACACCTTTTGATATAAACGACCCAGCAACATAAACAAAGTGGAATCGTCAAAACTTTTTTTAGAATCAGCGTTTTGTTTATTTTGTAGCTTGCTTTGGTTTGAGGTGTTACCTTTAATAGACCGGCACTGGATGAGAATTACCGTTAAACATGTAATAGAAGGGCCTCTAACTTTGAGCCAATTTATCTCGGTTCGAGTGAAAGATATCAAGAATGGGTTAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAATTGCCACATTTTTGATATCTTGCATAGGAATTGAGATAATTGAGCTAAAACTTGACAGTGTAGGTTTCCTTCTATTACAGGTTATATGGCATTTCGATTTCTGAAAAAACGATATCAAGACTTTTCAAAAATTCTCAGAATGTTATCAGTAGATAATTTGTTGATATCACCTCCAGAAAATGAGATAAACCTGTCTGATTGCATGTGTCTTTTGTGAGGCGTACTGATTTCAAAAGATCCCAATTTTTGATTTTGCTCACTTTTCCCTGCCCTCACTTCCTCTCTCCAGCTTTAATAACTTCCTATCTATATTTTTCCACAGGGATCGAACTAATGCGAAGTAGCGTGTCAGCTTCAAATTTATTTTCATGCGGCGTGATAATTGTTCTCTCACTGTGCTGCACTGAGATTGTATGCTTTTCCTATTCCTGACGTTCCTCCAAAAATCTGAAATTCCCATACCCCAAAAAAGGAAACATGAAAATTGAAAATTCCCAACAGATTTTTTTCCTTCCCTTTTTTCTCTTTTCCCCTGATTTTTTCCTATTGTTTGCACCTCTGACATAAACCTCCTAGCCGTCAACTTTGACTGAATTTACCTTGATTCCTGTAAACGATATCAATCAGCGATCAACTAACAAAATATTTGTGATAACATGATAAACGTTTTGTCA</canonical>
            <polymorphic>CTGAAAATTCCAGCATGGAATGCCCCAGAAACTAGTTTGGTTTAGAACGAAATGTATACATCAACACCTTTTGATATAAACGACCCAGCAACATAAACAAAGTGGAATCGTCAAAACTTTTTTTAGAATCAGCGTTTTGTTTATTTTGTAGCTTGCTTTGGTTTGAGGTGTTACCTTTAATAGACCGGCACTGGATGAGAATTACCGTTAAACATGTAATAGAAGGGCCTCTAACTTTGAGCCAATTTATCTCGGTTCGAGTGAAAGATATCAAGAATGGGTTAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAATTGCCACATTTTTGATATCTTGCATAGGAATTGAGATAATTGAGCTAAAACTTGACAGTGTAGGTTTCCTTCTATTACAGGTTATATGGCATTTCGATTTCTGAAAAAACGATATCAAGACTTTTCAAAAATTCTCAGAATGTTATCAGTAGATAATTTGTTGATATCACCTCYAGAAAATGAGATAAACCTGTCTGATTGCATGTGTCTTTTGTGAGGCGTACTGATTTCAAAAGATCCCAATTTTTGATTTTGCTCACTTTTCCCTGCCCTCACTTCCTCTCTCCAGCTTTAATAACTTCCTATCTATATTTTTCCACAGGGATCGAACTAATGCGAAGTAGCGTGTCAGCTTCAAATTTATTTTCATGCGGCGTGATAATTGTTCTCTCACTGTGCTGCACTGAGATTGTATGCTTTTCCTATTCCTGACGTTCCTCCAAAAATCTGAAATTCCCATACCCCAAAAAAGGAAACATGAAAATTGAAAATTCCCAACAGATTTTTTTCCTTCCCTTTTTTCTCTTTTCCCCTGATTTTTTCCTATTGTTTGCACCTCTGACATAAACCTCCTAGCCGTCAACTTTGACTGAATTTACCTTGATTCCTGTAAACGATATCAATCAGCGATCAACTAACAAAATATTTGTGATAACATGATAAACGTTTTGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACCTTTAATAGACCGGCACT</pcr_primer_p1>
		<pcr_primer_p2>TATTAAAGCTGGAGAGAGGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>452</pcr_amplicon_size>
		<canonical_amplicon>TACCTTTAATAGACCGGCACTGGATGAGAATTACCGTTAAACATGTAATAGAAGGGCCTCTAACTTTGAGCCAATTTATCTCGGTTCGAGTGAAAGATATCAAGAATGGGTTAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAATTGCCACATTTTTGATATCTTGCATAGGAATTGAGATAATTGAGCTAAAACTTGACAGTGTAGGTTTCCTTCTATTACAGGTTATATGGCATTTCGATTTCTGAAAAAACGATATCAAGACTTTTCAAAAATTCTCAGAATGTTATCAGTAGATAATTTGTTGATATCACCTCCAGAAAATGAGATAAACCTGTCTGATTGCATGTGTCTTTTGTGAGGCGTACTGATTTCAAAAGATCCCAATTTTTGATTTTGCTCACTTTTCCCTGCCCTCACTTCCTCTCTCCAGCTTTAATA</canonical_amplicon>
		<polymorphic_amplicon>TACCTTTAATAGACCGGCACTGGATGAGAATTACCGTTAAACATGTAATAGAAGGGCCTCTAACTTTGAGCCAATTTATCTCGGTTCGAGTGAAAGATATCAAGAATGGGTTAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAATTGCCACATTTTTGATATCTTGCATAGGAATTGAGATAATTGAGCTAAAACTTGACAGTGTAGGTTTCCTTCTATTACAGGTTATATGGCATTTCGATTTCTGAAAAAACGATATCAAGACTTTTCAAAAATTCTCAGAATGTTATCAGTAGATAATTTGTTGATATCACCTCYAGAAAATGAGATAAACCTGTCTGATTGCATGTGTCTTTTGTGAGGCGTACTGATTTCAAAAGATCCCAATTTTTGATTTTGCTCACTTTTCCCTGCCCTCACTTCCTCTCTCCAGCTTTAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3468</snp_id>
        <super_contig>c001401072.Contig1</super_contig>
        <contig_pos>98459</contig_pos>
        <strand>+</strand>
        <context>TTTTGATTTT[G/T]CWCACTTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGTCTTTTGTGAGGCGTACTGATTTCAAAAGATCCCAATTTTTGATTTT</left_flank>
        <right_flank>CTCACTTTTCCCTGCCCTCACTTCCTCTCTCCAGCTTTAATAACTTCCTA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACCCAGCAACATAAACAAAGTGGAATCGTCAAAACTTTTTTTAGAATCAGCGTTTTGTTTATTTTGTAGCTTGCTTTGGTTTGAGGTGTTACCTTTAATAGACCGGCACTGGATGAGAATTACCGTTAAACATGTAATAGAAGGGCCTCTAACTTTGAGCCAATTTATCTCGGTTCGAGTGAAAGATATCAAGAATGGGTTAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAATTGCCACATTTTTGATATCTTGCATAGGAATTGAGATAATTGAGCTAAAACTTGACAGTGTAGGTTTCCTTCTATTACAGGTTATATGGCATTTCGATTTCTGAAAAAACGATATCAAGACTTTTCAAAAATTCTCAGAATGTTATCAGTAGATAATTTGTTGATATCACCTCCAGAAAATGAGATAAACCTGTCTGATTGCATGTGTCTTTTGTGAGGCGTACTGATTTCAAAAGATCCCAATTTTTGATTTTGCTCACTTTTCCCTGCCCTCACTTCCTCTCTCCAGCTTTAATAACTTCCTATCTATATTTTTCCACAGGGATCGAACTAATGCGAAGTAGCGTGTCAGCTTCAAATTTATTTTCATGCGGCGTGATAATTGTTCTCTCACTGTGCTGCACTGAGATTGTATGCTTTTCCTATTCCTGACGTTCCTCCAAAAATCTGAAATTCCCATACCCCAAAAAAGGAAACATGAAAATTGAAAATTCCCAACAGATTTTTTTCCTTCCCTTTTTTCTCTTTTCCCCTGATTTTTTCCTATTGTTTGCACCTCTGACATAAACCTCCTAGCCGTCAACTTTGACTGAATTTACCTTGATTCCTGTAAACGATATCAATCAGCGATCAACTAACAAAATATTTGTGATAACATGATAAACGTTTTGTCAATAGACCACTTTTTGGTAACTTTCACAGGAACCGAGATATATGAGCTCAAAAATGGACGGTGTTTATGATGATTTCTGTGT</canonical>
            <polymorphic>GACCCAGCAACATAAACAAAGTGGAATCGTCAAAACTTTTTTTAGAATCAGCGTTTTGTTTATTTTGTAGCTTGCTTTGGTTTGAGGTGTTACCTTTAATAGACCGGCACTGGATGAGAATTACCGTTAAACATGTAATAGAAGGGCCTCTAACTTTGAGCCAATTTATCTCGGTTCGAGTGAAAGATATCAAGAATGGGTTAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAATTGCCACATTTTTGATATCTTGCATAGGAATTGAGATAATTGAGCTAAAACTTGACAGTGTAGGTTTCCTTCTATTACAGGTTATATGGCATTTCGATTTCTGAAAAAACGATATCAAGACTTTTCAAAAATTCTCAGAATGTTATCAGTAGATAATTTGTTGATATCACCTCCAGAAAATGAGATAAACCTGTCTGATTGCATGTGTCTTTTGTGAGGCGTACTGATTTCAAAAGATCCCAATTTTTGATTTTKCTCACTTTTCCCTGCCCTCACTTCCTCTCTCCAGCTTTAATAACTTCCTATCTATATTTTTCCACAGGGATCGAACTAATGCGAAGTAGCGTGTCAGCTTCAAATTTATTTTCATGCGGCGTGATAATTGTTCTCTCACTGTGCTGCACTGAGATTGTATGCTTTTCCTATTCCTGACGTTCCTCCAAAAATCTGAAATTCCCATACCCCAAAAAAGGAAACATGAAAATTGAAAATTCCCAACAGATTTTTTTCCTTCCCTTTTTTCTCTTTTCCCCTGATTTTTTCCTATTGTTTGCACCTCTGACATAAACCTCCTAGCCGTCAACTTTGACTGAATTTACCTTGATTCCTGTAAACGATATCAATCAGCGATCAACTAACAAAATATTTGTGATAACATGATAAACGTTTTGTCAATAGACCACTTTTTGGTAACTTTCACAGGAACCGAGATATATGAGCTCAAAAATGGACGGTGTTTATGATGATTTCTGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACCTTTAATAGACCGGCACT</pcr_primer_p1>
		<pcr_primer_p2>CCTGTGGAAAAATATAGATAGGA</pcr_primer_p2>
		<pcr_amplicon_size>478</pcr_amplicon_size>
		<canonical_amplicon>TACCTTTAATAGACCGGCACTGGATGAGAATTACCGTTAAACATGTAATAGAAGGGCCTCTAACTTTGAGCCAATTTATCTCGGTTCGAGTGAAAGATATCAAGAATGGGTTAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAATTGCCACATTTTTGATATCTTGCATAGGAATTGAGATAATTGAGCTAAAACTTGACAGTGTAGGTTTCCTTCTATTACAGGTTATATGGCATTTCGATTTCTGAAAAAACGATATCAAGACTTTTCAAAAATTCTCAGAATGTTATCAGTAGATAATTTGTTGATATCACCTCCAGAAAATGAGATAAACCTGTCTGATTGCATGTGTCTTTTGTGAGGCGTACTGATTTCAAAAGATCCCAATTTTTGATTTTGCTCACTTTTCCCTGCCCTCACTTCCTCTCTCCAGCTTTAATAACTTCCTATCTATATTTTTCCACAGG</canonical_amplicon>
		<polymorphic_amplicon>TACCTTTAATAGACCGGCACTGGATGAGAATTACCGTTAAACATGTAATAGAAGGGCCTCTAACTTTGAGCCAATTTATCTCGGTTCGAGTGAAAGATATCAAGAATGGGTTAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAATTGCCACATTTTTGATATCTTGCATAGGAATTGAGATAATTGAGCTAAAACTTGACAGTGTAGGTTTCCTTCTATTACAGGTTATATGGCATTTCGATTTCTGAAAAAACGATATCAAGACTTTTCAAAAATTCTCAGAATGTTATCAGTAGATAATTTGTTGATATCACCTCCAGAAAATGAGATAAACCTGTCTGATTGCATGTGTCTTTTGTGAGGCGTACTGATTTCAAAAGATCCCAATTTTTGATTTTKCTCACTTTTCCCTGCCCTCACTTCCTCTCTCCAGCTTTAATAACTTCCTATCTATATTTTTCCACAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3469</snp_id>
        <super_contig>c001401072.Contig1</super_contig>
        <contig_pos>98461</contig_pos>
        <strand>+</strand>
        <context>TTGATTTTKC[A/T]CACTTTTCCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCTTTTGTGAGGCGTACTGATTTCAAAAGATCCCAATTTTTGATTTTGC</left_flank>
        <right_flank>CACTTTTCCCTGCCCTCACTTCCTCTCTCCAGCTTTAATAACTTCCTATC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCAGCAACATAAACAAAGTGGAATCGTCAAAACTTTTTTTAGAATCAGCGTTTTGTTTATTTTGTAGCTTGCTTTGGTTTGAGGTGTTACCTTTAATAGACCGGCACTGGATGAGAATTACCGTTAAACATGTAATAGAAGGGCCTCTAACTTTGAGCCAATTTATCTCGGTTCGAGTGAAAGATATCAAGAATGGGTTAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAATTGCCACATTTTTGATATCTTGCATAGGAATTGAGATAATTGAGCTAAAACTTGACAGTGTAGGTTTCCTTCTATTACAGGTTATATGGCATTTCGATTTCTGAAAAAACGATATCAAGACTTTTCAAAAATTCTCAGAATGTTATCAGTAGATAATTTGTTGATATCACCTCCAGAAAATGAGATAAACCTGTCTGATTGCATGTGTCTTTTGTGAGGCGTACTGATTTCAAAAGATCCCAATTTTTGATTTTGCTCACTTTTCCCTGCCCTCACTTCCTCTCTCCAGCTTTAATAACTTCCTATCTATATTTTTCCACAGGGATCGAACTAATGCGAAGTAGCGTGTCAGCTTCAAATTTATTTTCATGCGGCGTGATAATTGTTCTCTCACTGTGCTGCACTGAGATTGTATGCTTTTCCTATTCCTGACGTTCCTCCAAAAATCTGAAATTCCCATACCCCAAAAAAGGAAACATGAAAATTGAAAATTCCCAACAGATTTTTTTCCTTCCCTTTTTTCTCTTTTCCCCTGATTTTTTCCTATTGTTTGCACCTCTGACATAAACCTCCTAGCCGTCAACTTTGACTGAATTTACCTTGATTCCTGTAAACGATATCAATCAGCGATCAACTAACAAAATATTTGTGATAACATGATAAACGTTTTGTCAATAGACCACTTTTTGGTAACTTTCACAGGAACCGAGATATATGAGCTCAAAAATGGACGGTGTTTATGATGATTTCTGTGTAA</canonical>
            <polymorphic>CCCAGCAACATAAACAAAGTGGAATCGTCAAAACTTTTTTTAGAATCAGCGTTTTGTTTATTTTGTAGCTTGCTTTGGTTTGAGGTGTTACCTTTAATAGACCGGCACTGGATGAGAATTACCGTTAAACATGTAATAGAAGGGCCTCTAACTTTGAGCCAATTTATCTCGGTTCGAGTGAAAGATATCAAGAATGGGTTAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAATTGCCACATTTTTGATATCTTGCATAGGAATTGAGATAATTGAGCTAAAACTTGACAGTGTAGGTTTCCTTCTATTACAGGTTATATGGCATTTCGATTTCTGAAAAAACGATATCAAGACTTTTCAAAAATTCTCAGAATGTTATCAGTAGATAATTTGTTGATATCACCTCCAGAAAATGAGATAAACCTGTCTGATTGCATGTGTCTTTTGTGAGGCGTACTGATTTCAAAAGATCCCAATTTTTGATTTTGCWCACTTTTCCCTGCCCTCACTTCCTCTCTCCAGCTTTAATAACTTCCTATCTATATTTTTCCACAGGGATCGAACTAATGCGAAGTAGCGTGTCAGCTTCAAATTTATTTTCATGCGGCGTGATAATTGTTCTCTCACTGTGCTGCACTGAGATTGTATGCTTTTCCTATTCCTGACGTTCCTCCAAAAATCTGAAATTCCCATACCCCAAAAAAGGAAACATGAAAATTGAAAATTCCCAACAGATTTTTTTCCTTCCCTTTTTTCTCTTTTCCCCTGATTTTTTCCTATTGTTTGCACCTCTGACATAAACCTCCTAGCCGTCAACTTTGACTGAATTTACCTTGATTCCTGTAAACGATATCAATCAGCGATCAACTAACAAAATATTTGTGATAACATGATAAACGTTTTGTCAATAGACCACTTTTTGGTAACTTTCACAGGAACCGAGATATATGAGCTCAAAAATGGACGGTGTTTATGATGATTTCTGTGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACCTTTAATAGACCGGCACT</pcr_primer_p1>
		<pcr_primer_p2>CCTGTGGAAAAATATAGATAGGA</pcr_primer_p2>
		<pcr_amplicon_size>478</pcr_amplicon_size>
		<canonical_amplicon>TACCTTTAATAGACCGGCACTGGATGAGAATTACCGTTAAACATGTAATAGAAGGGCCTCTAACTTTGAGCCAATTTATCTCGGTTCGAGTGAAAGATATCAAGAATGGGTTAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAATTGCCACATTTTTGATATCTTGCATAGGAATTGAGATAATTGAGCTAAAACTTGACAGTGTAGGTTTCCTTCTATTACAGGTTATATGGCATTTCGATTTCTGAAAAAACGATATCAAGACTTTTCAAAAATTCTCAGAATGTTATCAGTAGATAATTTGTTGATATCACCTCCAGAAAATGAGATAAACCTGTCTGATTGCATGTGTCTTTTGTGAGGCGTACTGATTTCAAAAGATCCCAATTTTTGATTTTGCTCACTTTTCCCTGCCCTCACTTCCTCTCTCCAGCTTTAATAACTTCCTATCTATATTTTTCCACAGG</canonical_amplicon>
		<polymorphic_amplicon>TACCTTTAATAGACCGGCACTGGATGAGAATTACCGTTAAACATGTAATAGAAGGGCCTCTAACTTTGAGCCAATTTATCTCGGTTCGAGTGAAAGATATCAAGAATGGGTTAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAATTGCCACATTTTTGATATCTTGCATAGGAATTGAGATAATTGAGCTAAAACTTGACAGTGTAGGTTTCCTTCTATTACAGGTTATATGGCATTTCGATTTCTGAAAAAACGATATCAAGACTTTTCAAAAATTCTCAGAATGTTATCAGTAGATAATTTGTTGATATCACCTCCAGAAAATGAGATAAACCTGTCTGATTGCATGTGTCTTTTGTGAGGCGTACTGATTTCAAAAGATCCCAATTTTTGATTTTGCWCACTTTTCCCTGCCCTCACTTCCTCTCTCCAGCTTTAATAACTTCCTATCTATATTTTTCCACAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3470</snp_id>
        <super_contig>c001401072.Contig1</super_contig>
        <contig_pos>100174</contig_pos>
        <strand>+</strand>
        <context>AAATATTATA[C/G]GAAGGAATGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTATATTTCAGAAAACAAGATTTCAAAGATTGGCAATGGAAATATTATA</left_flank>
        <right_flank>GAAGGAATGGTTGAAGAAGATGAGTTCTATTTTATTTTTTCTCTTCTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTTTCTCAACCCGAACCGCTTCAGAAGTTGTAACAATTTTTTTTCTTTGCAATGTAGAAGCCCACTCTATGCCAGCACATTAAGCTCGATTTTCTCTGTTCCTTCAAAAGATATTTGAAAATGTTCAACGGATAAATTATTTATCACAATATCAGAAATATTTTGTCAGTTGACTGATTTTTGATATTTTTTATAGGAATCGAGATAATTAAGCTAAAAAATACCGTAGTTTTTGTGTTTTTCGCTCTTTCGTTGTTCTTTCTTCTGATAATCCAAGATCCACAAAATAAACTTTTCATAATTTATCTCTGCGGATTTAAATGAGTACTGTGGATGGGCAAGAATATTCTGGAAATGATGAAACCAAATGGCGTTCAGTGATGCCAAAAAGCCGAGCTTCATTATGAAAGATAAGTTGATATTCACAAGCTACAGTAATATAATTTCATTATATTTCAGAAAACAAGATTTCAAAGATTGGCAATGGAAATATTATACGAAGGAATGGTTGAAGAAGATGAGTTCTATTTTATTTTTTCTCTTCTCGATGAACCATCAAAAACGAATATTTTTCAGTATCAGATCGGAGATTGGCACAAGCTGGAGGACAAATCTCTCGATAGCTTTATCACCATGGATGGAGATCCCAGATCTTGGAAGCAATAAAAGGTGAACTTTTGGAATATTGATTCTTTAAATCTTGTTTCTCTTTCAGACAGCGTCTGCCTCCAGCTTCTACTTTGCTCGAGCAGATCCAATGCTTCAGCTTCTCCGGCTCCTACTTGGTCCAACGGTGACTGTAATTGGTTCCTGAAAAAGTGTCAGAATTGTGGAAGTTTTGTCCTTTACTGCTTCACTATGAGCTTGCTTGGTTACGTACTAGCTTGCATATTGATTCTTCATACTTTTCGCTTGGCCGAGCATTTGCAAACTCATTTGATCATAAGATAACGAGCCTAAAAAGTGATAGCACCACCCCGGCGATGAGTATGGATTCT</canonical>
            <polymorphic>ATGTTTCTCAACCCGAACCGCTTCAGAAGTTGTAACAATTTTTTTTCTTTGCAATGTAGAAGCCCACTCTATGCCAGCACATTAAGCTCGATTTTCTCTGTTCCTTCAAAAGATATTTGAAAATGTTCAACGGATAAATTATTTATCACAATATCAGAAATATTTTGTCAGTTGACTGATTTTTGATATTTTTTATAGGAATCGAGATAATTAAGCTAAAAAATACCGTAGTTTTTGTGTTTTTCGCTCTTTCGTTGTTCTTTCTTCTGATAATCCAAGATCCACAAAATAAACTTTTCATAATTTATCTCTGCGGATTTAAATGAGTACTGTGGATGGGCAAGAATATTCTGGAAATGATGAAACCAAATGGCGTTCAGTGATGCCAAAAAGCCGAGCTTCATTATGAAAGATAAGTTGATATTCACAAGCTACAGTAATATAATTTCATTATATTTCAGAAAACAAGATTTCAAAGATTGGCAATGGAAATATTATASGAAGGAATGGTTGAAGAAGATGAGTTCTATTTTATTTTTTCTCTTCTCGATGAACCATCAAAAACGAATATTTTTCAGTATCAGATCGGAGATTGGCACAAGCTGGAGGACAAATCTCTCGATAGCTTTATCACCATGGATGGAGATCCCAGATCTTGGAAGCAATAAAAGGTGAACTTTTGGAATATTGATTCTTTAAATCTTGTTTCTCTTTCAGACAGCGTCTGCCTCCAGCTTCTACTTTGCTCGAGCAGATCCAATGCTTCAGCTTCTCCGGCTCCTACTTGGTCCAACGGTGACTGTAATTGGTTCCTGAAAAAGTGTCAGAATTGTGGAAGTTTTGTCCTTTACTGCTTCACTATGAGCTTGCTTGGTTACGTACTAGCTTGCATATTGATTCTTCATACTTTTCGCTTGGCCGAGCATTTGCAAACTCATTTGATCATAAGATAACGAGCCTAAAAAGTGATAGCACCACCCCGGCGATGAGTATGGATTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATATTCTGGAAATGATGAAAC</pcr_primer_p1>
		<pcr_primer_p2>CTCCGATCTGATACTGAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAATATTCTGGAAATGATGAAACCAAATGGCGTTCAGTGATGCCAAAAAGCCGAGCTTCATTATGAAAGATAAGTTGATATTCACAAGCTACAGTAATATAATTTCATTATATTTCAGAAAACAAGATTTCAAAGATTGGCAATGGAAATATTATACGAAGGAATGGTTGAAGAAGATGAGTTCTATTTTATTTTTTCTCTTCTCGATGAACCATCAAAAACGAATATTTTTCAGTATCAGATCGGAG</canonical_amplicon>
		<polymorphic_amplicon>GAATATTCTGGAAATGATGAAACCAAATGGCGTTCAGTGATGCCAAAAAGCCGAGCTTCATTATGAAAGATAAGTTGATATTCACAAGCTACAGTAATATAATTTCATTATATTTCAGAAAACAAGATTTCAAAGATTGGCAATGGAAATATTATASGAAGGAATGGTTGAAGAAGATGAGTTCTATTTTATTTTTTCTCTTCTCGATGAACCATCAAAAACGAATATTTTTCAGTATCAGATCGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3471</snp_id>
        <super_contig>c001401072.Contig1</super_contig>
        <contig_pos>100142</contig_pos>
        <strand>+</strand>
        <context>TCAGAAAACA[A/C]GATTTCAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGATATTCACAAGCTACAGTAATATAATTTCATTATATTTCAGAAAACA</left_flank>
        <right_flank>GATTTCAAAGATTGGCAATGGAAATATTATACGAAGGAATGGTTGAAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTCTAGTCCTATTCCTCTGGTAAATTGTGATGTTTCTCAACCCGAACCGCTTCAGAAGTTGTAACAATTTTTTTTCTTTGCAATGTAGAAGCCCACTCTATGCCAGCACATTAAGCTCGATTTTCTCTGTTCCTTCAAAAGATATTTGAAAATGTTCAACGGATAAATTATTTATCACAATATCAGAAATATTTTGTCAGTTGACTGATTTTTGATATTTTTTATAGGAATCGAGATAATTAAGCTAAAAAATACCGTAGTTTTTGTGTTTTTCGCTCTTTCGTTGTTCTTTCTTCTGATAATCCAAGATCCACAAAATAAACTTTTCATAATTTATCTCTGCGGATTTAAATGAGTACTGTGGATGGGCAAGAATATTCTGGAAATGATGAAACCAAATGGCGTTCAGTGATGCCAAAAAGCCGAGCTTCATTATGAAAGATAAGTTGATATTCACAAGCTACAGTAATATAATTTCATTATATTTCAGAAAACAAGATTTCAAAGATTGGCAATGGAAATATTATACGAAGGAATGGTTGAAGAAGATGAGTTCTATTTTATTTTTTCTCTTCTCGATGAACCATCAAAAACGAATATTTTTCAGTATCAGATCGGAGATTGGCACAAGCTGGAGGACAAATCTCTCGATAGCTTTATCACCATGGATGGAGATCCCAGATCTTGGAAGCAATAAAAGGTGAACTTTTGGAATATTGATTCTTTAAATCTTGTTTCTCTTTCAGACAGCGTCTGCCTCCAGCTTCTACTTTGCTCGAGCAGATCCAATGCTTCAGCTTCTCCGGCTCCTACTTGGTCCAACGGTGACTGTAATTGGTTCCTGAAAAAGTGTCAGAATTGTGGAAGTTTTGTCCTTTACTGCTTCACTATGAGCTTGCTTGGTTACGTACTAGCTTGCATATTGATTCTTCATACTTTTCGCTTGGCCGAGCATTTGCAAACTCATTTGATCATAAGATAACGAGCCTAAAAAGTG</canonical>
            <polymorphic>GAATTCTAGTCCTATTCCTCTGGTAAATTGTGATGTTTCTCAACCCGAACCGCTTCAGAAGTTGTAACAATTTTTTTTCTTTGCAATGTAGAAGCCCACTCTATGCCAGCACATTAAGCTCGATTTTCTCTGTTCCTTCAAAAGATATTTGAAAATGTTCAACGGATAAATTATTTATCACAATATCAGAAATATTTTGTCAGTTGACTGATTTTTGATATTTTTTATAGGAATCGAGATAATTAAGCTAAAAAATACCGTAGTTTTTGTGTTTTTCGCTCTTTCGTTGTTCTTTCTTCTGATAATCCAAGATCCACAAAATAAACTTTTCATAATTTATCTCTGCGGATTTAAATGAGTACTGTGGATGGGCAAGAATATTCTGGAAATGATGAAACCAAATGGCGTTCAGTGATGCCAAAAAGCCGAGCTTCATTATGAAAGATAAGTTGATATTCACAAGCTACAGTAATATAATTTCATTATATTTCAGAAAACAMGATTTCAAAGATTGGCAATGGAAATATTATACGAAGGAATGGTTGAAGAAGATGAGTTCTATTTTATTTTTTCTCTTCTCGATGAACCATCAAAAACGAATATTTTTCAGTATCAGATCGGAGATTGGCACAAGCTGGAGGACAAATCTCTCGATAGCTTTATCACCATGGATGGAGATCCCAGATCTTGGAAGCAATAAAAGGTGAACTTTTGGAATATTGATTCTTTAAATCTTGTTTCTCTTTCAGACAGCGTCTGCCTCCAGCTTCTACTTTGCTCGAGCAGATCCAATGCTTCAGCTTCTCCGGCTCCTACTTGGTCCAACGGTGACTGTAATTGGTTCCTGAAAAAGTGTCAGAATTGTGGAAGTTTTGTCCTTTACTGCTTCACTATGAGCTTGCTTGGTTACGTACTAGCTTGCATATTGATTCTTCATACTTTTCGCTTGGCCGAGCATTTGCAAACTCATTTGATCATAAGATAACGAGCCTAAAAAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATATTCTGGAAATGATGAAAC</pcr_primer_p1>
		<pcr_primer_p2>CTCCGATCTGATACTGAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAATATTCTGGAAATGATGAAACCAAATGGCGTTCAGTGATGCCAAAAAGCCGAGCTTCATTATGAAAGATAAGTTGATATTCACAAGCTACAGTAATATAATTTCATTATATTTCAGAAAACAAGATTTCAAAGATTGGCAATGGAAATATTATACGAAGGAATGGTTGAAGAAGATGAGTTCTATTTTATTTTTTCTCTTCTCGATGAACCATCAAAAACGAATATTTTTCAGTATCAGATCGGAG</canonical_amplicon>
		<polymorphic_amplicon>GAATATTCTGGAAATGATGAAACCAAATGGCGTTCAGTGATGCCAAAAAGCCGAGCTTCATTATGAAAGATAAGTTGATATTCACAAGCTACAGTAATATAATTTCATTATATTTCAGAAAACAMGATTTCAAAGATTGGCAATGGAAATATTATACGAAGGAATGGTTGAAGAAGATGAGTTCTATTTTATTTTTTCTCTTCTCGATGAACCATCAAAAACGAATATTTTTCAGTATCAGATCGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3472</snp_id>
        <super_contig>c001401072.Contig1</super_contig>
        <contig_pos>100067</contig_pos>
        <strand>+</strand>
        <context>ATGCCAAAAA[A/G]CCGAGCTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAATATTCTGGAAATGATGAAACCAAATGGCGTTCAGTGATGCCAAAAA</left_flank>
        <right_flank>CCGAGCTTCATTATGAAAGATAAGTTGATATTCACAAGCTACAGTAATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTCGGAGGACAACTTCGAATTCGCGTACGACTGCAGGTGAAAGAGTTGGCGGTGTTTTTCTTCTATTATCCTAAGAATTCTAGTCCTATTCCTCTGGTAAATTGTGATGTTTCTCAACCCGAACCGCTTCAGAAGTTGTAACAATTTTTTTTCTTTGCAATGTAGAAGCCCACTCTATGCCAGCACATTAAGCTCGATTTTCTCTGTTCCTTCAAAAGATATTTGAAAATGTTCAACGGATAAATTATTTATCACAATATCAGAAATATTTTGTCAGTTGACTGATTTTTGATATTTTTTATAGGAATCGAGATAATTAAGCTAAAAAATACCGTAGTTTTTGTGTTTTTCGCTCTTTCGTTGTTCTTTCTTCTGATAATCCAAGATCCACAAAATAAACTTTTCATAATTTATCTCTGCGGATTTAAATGAGTACTGTGGATGGGCAAGAATATTCTGGAAATGATGAAACCAAATGGCGTTCAGTGATGCCAAAAAGCCGAGCTTCATTATGAAAGATAAGTTGATATTCACAAGCTACAGTAATATAATTTCATTATATTTCAGAAAACAAGATTTCAAAGATTGGCAATGGAAATATTATACGAAGGAATGGTTGAAGAAGATGAGTTCTATTTTATTTTTTCTCTTCTCGATGAACCATCAAAAACGAATATTTTTCAGTATCAGATCGGAGATTGGCACAAGCTGGAGGACAAATCTCTCGATAGCTTTATCACCATGGATGGAGATCCCAGATCTTGGAAGCAATAAAAGGTGAACTTTTGGAATATTGATTCTTTAAATCTTGTTTCTCTTTCAGACAGCGTCTGCCTCCAGCTTCTACTTTGCTCGAGCAGATCCAATGCTTCAGCTTCTCCGGCTCCTACTTGGTCCAACGGTGACTGTAATTGGTTCCTGAAAAAGTGTCAGAATTGTGGAAGTTTTGTCCTTTACTGCTTCACTATGAGCTTGCTTGGTTACGTACTAGCTTGCATA</canonical>
            <polymorphic>GGTCGGAGGACAACTTCGAATTCGCGTACGACTGCAGGTGAAAGAGTTGGCGGTGTTTTTCTTCTATTATCCTAAGAATTCTAGTCCTATTCCTCTGGTAAATTGTGATGTTTCTCAACCCGAACCGCTTCAGAAGTTGTAACAATTTTTTTTCTTTGCAATGTAGAAGCCCACTCTATGCCAGCACATTAAGCTCGATTTTCTCTGTTCCTTCAAAAGATATTTGAAAATGTTCAACGGATAAATTATTTATCACAATATCAGAAATATTTTGTCAGTTGACTGATTTTTGATATTTTTTATAGGAATCGAGATAATTAAGCTAAAAAATACCGTAGTTTTTGTGTTTTTCGCTCTTTCGTTGTTCTTTCTTCTGATAATCCAAGATCCACAAAATAAACTTTTCATAATTTATCTCTGCGGATTTAAATGAGTACTGTGGATGGGCAAGAATATTCTGGAAATGATGAAACCAAATGGCGTTCAGTGATGCCAAAAARCCGAGCTTCATTATGAAAGATAAGTTGATATTCACAAGCTACAGTAATATAATTTCATTATATTTCAGAAAACAAGATTTCAAAGATTGGCAATGGAAATATTATACGAAGGAATGGTTGAAGAAGATGAGTTCTATTTTATTTTTTCTCTTCTCGATGAACCATCAAAAACGAATATTTTTCAGTATCAGATCGGAGATTGGCACAAGCTGGAGGACAAATCTCTCGATAGCTTTATCACCATGGATGGAGATCCCAGATCTTGGAAGCAATAAAAGGTGAACTTTTGGAATATTGATTCTTTAAATCTTGTTTCTCTTTCAGACAGCGTCTGCCTCCAGCTTCTACTTTGCTCGAGCAGATCCAATGCTTCAGCTTCTCCGGCTCCTACTTGGTCCAACGGTGACTGTAATTGGTTCCTGAAAAAGTGTCAGAATTGTGGAAGTTTTGTCCTTTACTGCTTCACTATGAGCTTGCTTGGTTACGTACTAGCTTGCATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>178 171 169 129 109 88 34 33 24 23 20 9 8 5</canonical_bands>
                <polymorphic_bands>183 171 169 129 109 88 34 33 24 23 20 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATCCACAAAATAAACTTTTCA</pcr_primer_p1>
		<pcr_primer_p2>TAGAACTCATCTTCTTCAACCAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGATCCACAAAATAAACTTTTCATAATTTATCTCTGCGGATTTAAATGAGTACTGTGGATGGGCAAGAATATTCTGGAAATGATGAAACCAAATGGCGTTCAGTGATGCCAAAAAGCCGAGCTTCATTATGAAAGATAAGTTGATATTCACAAGCTACAGTAATATAATTTCATTATATTTCAGAAAACAAGATTTCAAAGATTGGCAATGGAAATATTATACGAAGGAATGGTTGAAGAAGATGAGTTCTA</canonical_amplicon>
		<polymorphic_amplicon>AGATCCACAAAATAAACTTTTCATAATTTATCTCTGCGGATTTAAATGAGTACTGTGGATGGGCAAGAATATTCTGGAAATGATGAAACCAAATGGCGTTCAGTGATGCCAAAAARCCGAGCTTCATTATGAAAGATAAGTTGATATTCACAAGCTACAGTAATATAATTTCATTATATTTCAGAAAACAAGATTTCAAAGATTGGCAATGGAAATATTATACGAAGGAATGGTTGAAGAAGATGAGTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3473</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>165941</contig_pos>
        <strand></strand>
        <context>taaaaatttt[T/C]caaatcagtt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTAAAATGTATCTCATAAAAGTTTCTATAGTTTTGTAGTTTAAAAATTTT</left_flank>
        <right_flank>CAAATCAGTTTTGAGACTTGAGATATGGGTCCTTGAAGGCAGTCGCTTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACAATTGGAGAGGACCCCCTAGTTTTGAGCCAATTTATCTCGGTTCCTGTGAAACATATCAAAACGTTGTCAACTGATAAAATGTTGCTGATATCATGATAAACATTTTGTTAGTTTATTACTTTTTGGTATCGTTCACAGGAATCCAGATATATGGATTTAAAGTTGACAGGCGCTGAAAAACAAGAGCTGATGACTTCTCGTTGGGATCGTCTAATTTTGAAAGCGTATATCTCAAAAACTATATTAGATATCTAAAAACAGTAAACTGCAAGAATATAGCTCATGAAATTTTCAAAATGTTCTTAATTGATACAAATTTGTTAGCAATTTTAGGTTTTGAGATACATGCGCTCAAAGATAATGTAAGTTTTCAAGCCCAGAGTAGTTCAAGTTTGAACGCGAATATCTCAAAATCTAAAAGTGCTATCAAAAAATGTTCAATTAGTAAAATGTATCTCATAAAAGTTTCTATAGTTTTGTAGTTTAAAAATTTTTCAAATCAGTTTTGAGACTTGAGATATGGGTCCTTGAAGGCAGTCGCTTTTAAAAAGCAGCGAAAGGAGGAAGAGCCGACGCTTGCGAAAGCATAACTAACTTCAAACTTGGAATTTCTGTTCCAATCAAAAAGTTTGACATAGAACTTGATAAGATCTACAAGTTCATATTAAATCCAGCCATATTTGAACGGTGAGATTTGAACTAGGCTAGATCTTAAAGGAGCAGAGCCAAAAAAGTTATCCGGGTCATTTTACTAGGTTAAAACTTAGAAAAAACGTTCCAGTTGTTTTAATGAAACTTTTTAAACAAATATACTTTTAACTAAAATATTTTAAACGTTTATTGTATTTCAGGTGTTTAGGGTATGATTACAAGATGGGGGTATTCAAGAGTTCTATTCAAGGTCCTCCATAAAACCTGGCCGCTATCTTTGAGCCAATTTATCTCATTTTCTGAAAGACATATGAAAAAGTGGTTAACTGATAAAATGTTTATTG</canonical>
            <polymorphic>AAACAATTGGAGAGGACCCCCTAGTTTTGAGCCAATTTATCTCGGTTCCTGTGAAACATATCAAAACGTTGTCAACTGATAAAATGTTGCTGATATCATGATAAACATTTTGTTAGTTTATTACTTTTTGGTATCGTTCACAGGAATCCAGATATATGGATTTAAAGTTGACAGGCGCTGAAAAACAAGAGCTGATGACTTCTCGTTGGGATCGTCTAATTTTGAAAGCGTATATCTCAAAAACTATATTAGATATCTAAAAACAGTAAACTGCAAGAATATAGCTCATGAAATTTTCAAAATGTTCTTAATTGATACAAATTTGTTAGCAATTTTAGGTTTTGAGATACATGCGCTCAAAGATAATGTAAGTTTTCAAGCCCAGAGTAGTTCAAGTTTGAACGCGAATATCTCAAAATCTAAAAGTGCTATCAAAAAATGTTCAATTAGTAAAATGTATCTCATAAAAGTTTCTATAGTTTTGTAGTTTAAAAATTTTYCAAATCAGTTTTGAGACTTGAGATATGGGTCCTTGAAGGCAGTCGCTTTTAAAAAGCAGCGAAAGGAGGAAGAGCCGACGCTTGCGAAAGCATAACTAACTTCAAACTTGGAATTTCTGTTCCAATCAAAAAGTTTGACATAGAACTTGATAAGATCTACAAGTTCATATTAAATCCAGCCATATTTGAACGGTGAGATTTGAACTAGGCTAGATCTTAAAGGAGCAGAGCCAAAAAAGTTATCCGGGTCATTTTACTAGGTTAAAACTTAGAAAAAACGTTCCAGTTGTTTTAATGAAACTTTTTAAACAAATATACTTTTAACTAAAATATTTTAAACGTTTATTGTATTTCAGGTGTTTAGGGTATGATTACAAGATGGGGGTATTCAAGAGTTCTATTCAAGGTCCTCCATAAAACCTGGCCGCTATCTTTGAGCCAATTTATCTCATTTTCTGAAAGACATATGAAAAAGTGGTTAACTGATAAAATGTTTATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAAGAAACTTTCAGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTAGTAAAATGACCCGGATAAC</pcr_primer_p2>
		<pcr_amplicon_size>781</pcr_amplicon_size>
		<canonical_amplicon>TTCAAATCAGTTTTGAGACTTGAGATATGGGTCCTTGAAGGCAGTCGCTTTTAAAAAGCAGCGAAAGGAGGAAGAGCCGACGCTTGCGAAAGCATAACTAACTTCAAACTTGGAATTTCTGTTCCAATCAAAAAGTTTGACATAGAACTTGATAAGATCTACAAGTTCATATTAAATCCAGCCATATTTGAACGGTGAGATTTGAACTAGGCTAGATCTTAAAGGAGCAGAGCCAAAAAAGTTATCCGGGTCATTTTACTAG</canonical_amplicon>
		<polymorphic_amplicon>TYCAAATCAGTTTTGAGACTTGAGATATGGGTCCTTGAAGGCAGTCGCTTTTAAAAAGCAGCGAAAGGAGGAAGAGCCGACGCTTGCGAAAGCATAACTAACTTCAAACTTGGAATTTCTGTTCCAATCAAAAAGTTTGACATAGAACTTGATAAGATCTACAAGTTCATATTAAATCCAGCCATATTTGAACGGTGAGATTTGAACTAGGCTAGATCTTAAAGGAGCAGAGCCAAAAAAGTTATCCGGGTCATTTTACTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3474</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>166248</contig_pos>
        <strand></strand>
        <context>GAAACTTTTT[A/T]AACAAATATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTAGGTTAAAACTTAGAAAAAACGTTCCAGTTGTTTTAATGAAACTTTTT</left_flank>
        <right_flank>AACAAATATACTTTTAACTAAAATATTTTAAACGTTTATTGTATTTCAGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAATTGATACAAATTTGTTAGCAATTTTAGGTTTTGAGATACATGCGCTCAAAGATAATGTAAGTTTTCAAGCCCAGAGTAGTTCAAGTTTGAACGCGAATATCTCAAAATCTAAAAGTGCTATCAAAAAATGTTCAATTAGTAAAATGTATCTCATAAAAGTTTCTATAGTTTTGTAGTTTAAAAATTTTTCAAATCAGTTTTGAGACTTGAGATATGGGTCCTTGAAGGCAGTCGCTTTTAAAAAGCAGCGAAAGGAGGAAGAGCCGACGCTTGCGAAAGCATAACTAACTTCAAACTTGGAATTTCTGTTCCAATCAAAAAGTTTGACATAGAACTTGATAAGATCTACAAGTTCATATTAAATCCAGCCATATTTGAACGGTGAGATTTGAACTAGGCTAGATCTTAAAGGAGCAGAGCCAAAAAAGTTATCCGGGTCATTTTACTAGGTTAAAACTTAGAAAAAACGTTCCAGTTGTTTTAATGAAACTTTTTAAACAAATATACTTTTAACTAAAATATTTTAAACGTTTATTGTATTTCAGGTGTTTAGGGTATGATTACAAGATGGGGGTATTCAAGAGTTCTATTCAAGGTCCTCCATAAAACCTGGCCGCTATCTTTGAGCCAATTTATCTCATTTTCTGAAAGACATATGAAAAAGTGGTTAACTGATAAAATGTTTATTGTAATCTGAAAAACATTTTGTTAGTTTACAACTTTTTGATATCTTTTGGAAGAACCGAGATAATCAAGCTCAAAACATTTCGCTGCTAATGTCGACGCTATCAGCGACGATGGCGGCACCACCTTTGCAGTTGACCCAATTTATCTCAGTTTCTGTGAAAGATATCAAAAAGTAATCAACTGACGAATTGTAGCTCTTGTAAACATTTTGTTAGTTGACCACTTTTTAATATCTATTGAAAAAAGCGCGATAAACTGATGCAAAGTTAAGGAGCGCTTTAAATGCTTGTAGGTTTCAAGAACGGTATA</canonical>
            <polymorphic>TTAATTGATACAAATTTGTTAGCAATTTTAGGTTTTGAGATACATGCGCTCAAAGATAATGTAAGTTTTCAAGCCCAGAGTAGTTCAAGTTTGAACGCGAATATCTCAAAATCTAAAAGTGCTATCAAAAAATGTTCAATTAGTAAAATGTATCTCATAAAAGTTTCTATAGTTTTGTAGTTTAAAAATTTTTCAAATCAGTTTTGAGACTTGAGATATGGGTCCTTGAAGGCAGTCGCTTTTAAAAAGCAGCGAAAGGAGGAAGAGCCGACGCTTGCGAAAGCATAACTAACTTCAAACTTGGAATTTCTGTTCCAATCAAAAAGTTTGACATAGAACTTGATAAGATCTACAAGTTCATATTAAATCCAGCCATATTTGAACGGTGAGATTTGAACTAGGCTAGATCTTAAAGGAGCAGAGCCAAAAAAGTTATCCGGGTCATTTTACTAGGTTAAAACTTAGAAAAAACGTTCCAGTTGTTTTAATGAAACTTTTTWAACAAATATACTTTTAACTAAAATATTTTAAACGTTTATTGTATTTCAGGTGTTTAGGGTATGATTACAAGATGGGGGTATTCAAGAGTTCTATTCAAGGTCCTCCATAAAACCTGGCCGCTATCTTTGAGCCAATTTATCTCATTTTCTGAAAGACATATGAAAAAGTGGTTAACTGATAAAATGTTTATTGTAATCTGAAAAACATTTTGTTAGTTTACAACTTTTTGATATCTTTTGGAAGAACCGAGATAATCAAGCTCAAAACATTTCGCTGCTAATGTCGACGCTATCAGCGACGATGGCGGCACCACCTTTGCAGTTGACCCAATTTATCTCAGTTTCTGTGAAAGATATCAAAAAGTAATCAACTGACGAATTGTAGCTCTTGTAAACATTTTGTTAGTTGACCACTTTTTAATATCTATTGAAAAAAGCGCGATAAACTGATGCAAAGTTAAGGAGCGCTTTAAATGCTTGTAGGTTTCAAGAACGGTATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>442 256 183 60 30 29</canonical_bands>
                <polymorphic_bands>442 286 183 60 29</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>246 181 144 121 60 47 45 40 30 30 16 14 13 12 1</canonical_bands>
                <polymorphic_bands>246 181 144 121 60 47 45 40 30 30 29 14 12 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTATCCGGGTCATTTTACTA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTATGGAGGACCTTGAATAG</pcr_primer_p2>
		<pcr_amplicon_size>184</pcr_amplicon_size>
		<canonical_amplicon>AAGTTATCCGGGTCATTTTACTAGGTTAAAACTTAGAAAAAACGTTCCAGTTGTTTTAATGAAACTTTTTAAACAAATATACTTTTAACTAAAATATTTTAAACGTTTATTGTATTTCAGGTGTTTAGGGTATGATTACAAGATGGGGGTATTCAAGAGTTCTATTCAAGGTCCTCCATAAAAC</canonical_amplicon>
		<polymorphic_amplicon>AAGTTATCCGGGTCATTTTACTAGGTTAAAACTTAGAAAAAACGTTCCAGTTGTTTTAATGAAACTTTTTWAACAAATATACTTTTAACTAAAATATTTTAAACGTTTATTGTATTTCAGGTGTTTAGGGTATGATTACAAGATGGGGGTATTCAAGAGTTCTATTCAAGGTCCTCCATAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3499</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>169371</contig_pos>
        <strand></strand>
        <context>aagatatcaa[G/A]aaacggtcaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGCCGGCTTCCTGAAAAGTTAATTATCTAATTAAGTAATTAAGATATCAA</left_flank>
        <right_flank>AAACGGTCAATTAAAAAAATGTTGGAAATTTCATGGGTTCTAATTTTGTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGATTCCTGGGAAAACTTTATATAATGGATTTCCAATAAATCGAAATTTCAAAAAAATCAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATTTTTCGCGCGCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAGCAAATGTTTTTATTCCGAAAAAAAATCAGTTCGATCAAGTTAAAATTGGCACTGATGGCTCCGCCTCTTTTTGACGGCGAACTCTGGAAAAAAACGAACCGATTCGACCAAACAAACCAGTGGCATCCAGCTCATGCATGCCGGCTTCCTGAAAAGTTAATTATCTAATTAAGTAATTAAGATATCAAGAAACGGTCAATTAAAAAAATGTTGGAAATTTCATGGGTTCTAATTTTGTAGTAAACAATTTTTTGATTGCTTTTTTAGTTTTGGAGATATACGCTGTCAAAGTCGGACGATACCAAAAAGACGCAGACAAAGTATAAGCTCTCGCTGAACGTATATATCTCCAAAACTAAGAATGCTATATAAAAACAGCTGACTGCAAAATTGTAGCTCATAAAATTTCCTGCATTTTGCTAGTTAACAAAATTTTGCTAGCATTTTCCGCTTTTGAGATATACGCGCTCAAAATCAGGCGATCCAAAAAAGAGACGCAGACAAGGCATATGCTCTTGCTGAACGCGTTGATCGCCAAAACTAAAATTGCTATCTAAAAATAGTTAATTGCAAAGTTGTAGCTCATAAAATTTCCTACATTTTGCTAGTTAACAAAAATTTCCTAGCGTTTTTCGTTTTCTAGTTATACGCGTTTAAAGCTGACGAGCTCCGAGATCAAGGAGAGACGT</canonical>
            <polymorphic>TTGGATTCCTGGGAAAACTTTATATAATGGATTTCCAATAAATCGAAATTTCAAAAAAATCAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATTTTTCGCGCGCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAGCAAATGTTTTTATTCCGAAAAAAAATCAGTTCGATCAAGTTAAAATTGGCACTGATGGCTCCGCCTCTTTTTGACGGCGAACTCTGGAAAAAAACGAACCGATTCGACCAAACAAACCAGTGGCATCCAGCTCATGCATGCCGGCTTCCTGAAAAGTTAATTATCTAATTAAGTAATTAAGATATCAARAAACGGTCAATTAAAAAAATGTTGGAAATTTCATGGGTTCTAATTTTGTAGTAAACAATTTTTTGATTGCTTTTTTAGTTTTGGAGATATACGCTGTCAAAGTCGGACGATACCAAAAAGACGCAGACAAAGTATAAGCTCTCGCTGAACGTATATATCTCCAAAACTAAGAATGCTATATAAAAACAGCTGACTGCAAAATTGTAGCTCATAAAATTTCCTGCATTTTGCTAGTTAACAAAATTTTGCTAGCATTTTCCGCTTTTGAGATATACGCGCTCAAAATCAGGCGATCCAAAAAAGAGACGCAGACAAGGCATATGCTCTTGCTGAACGCGTTGATCGCCAAAACTAAAATTGCTATCTAAAAATAGTTAATTGCAAAGTTGTAGCTCATAAAATTTCCTACATTTTGCTAGTTAACAAAAATTTCCTAGCGTTTTTCGTTTTCTAGTTATACGCGTTTAAAGCTGACGAGCTCCGAGATCAAGGAGAGACGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>503 190 121 74 64 38 10</canonical_bands>
                <polymorphic_bands>541 190 121 74 64 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTAAAATTGGCACTGATG</pcr_primer_p1>
		<pcr_primer_p2>AAATATTCTTAGCTTCGGAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>851</pcr_amplicon_size>
		<canonical_amplicon>AAGTTAAAATTGGCACTGATGGCTCCGCCTCTTTTTGACGGCGAACTCTGGAAAAAAACGAACCGATTCGACCAAACAAACCAGTGGCATCCAGCTCATGCATGCCGGCTTCCTGAAAAGTTAATTATCTAATTAAGTAATTAAGATATCAAGAAACGGTCAATTAAAAAAATGT</canonical_amplicon>
		<polymorphic_amplicon>AAGTTAAAATTGGCACTGATGGCTCCGCCTCTTTTTGACGGCGAACTCTGGAAAAAAACGAACCGATTCGACCAAACAAACCAGTGGCATCCAGCTCATGCATGCCGGCTTCCTGAAAAGTTAATTATCTAATTAAGTAATTAAGATATCAARAAACGGTCAATTAAAAAAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3500</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>169095</contig_pos>
        <strand>+</strand>
        <context>GACAGGAATT[A/G]AGCAATGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATT</left_flank>
        <right_flank>AGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTTTAAAATTGGATTCCTGGGAAAACTTTATATAATGGATTTCCAATAAATCGAAATTTCAAAAAAATCAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATTTTTCGCGCGCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAGCAAATGTTTTTATTCCGAAAAAAAATCAGTTCGATCAAGTTAAAATTGGCACTGATGGCTCCGCCTCTTTTTGACGGCGAACTCTGGAAAAAAACGAACCGATTCGACCAAACAAACCAGTGGCATCCAGCTCATGCATGCCGGCTTCCTGAAAAGTTAATTATCTAATTAAGTAATTAAGATATCAAGAAACGGTCAATTAAAAAAATGTTGGAAATTTCATGGGTTCTAATTTTGTAGTAAACAATTTTTTGATTGCTTTTTTAGTTTTGGAGATATACGCTGTCAAAGTCGGACGATACCAAAAAGACGCAGACAAAGTATAAGCTCTCGCTGAACGTATATATCTCCAAAACTAAGAATGCTATATAAAAACAGCTGACTGCAAAATTGTAGCTCATAAAATTTCCTGC</canonical>
            <polymorphic>AAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTTTAAAATTGGATTCCTGGGAAAACTTTATATAATGGATTTCCAATAAATCGAAATTTCAAAAAAATCAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATTTTTCGCGCGCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTRAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAGCAAATGTTTTTATTCCGAAAAAAAATCAGTTCGATCAAGTTAAAATTGGCACTGATGGCTCCGCCTCTTTTTGACGGCGAACTCTGGAAAAAAACGAACCGATTCGACCAAACAAACCAGTGGCATCCAGCTCATGCATGCCGGCTTCCTGAAAAGTTAATTATCTAATTAAGTAATTAAGATATCAAGAAACGGTCAATTAAAAAAATGTTGGAAATTTCATGGGTTCTAATTTTGTAGTAAACAATTTTTTGATTGCTTTTTTAGTTTTGGAGATATACGCTGTCAAAGTCGGACGATACCAAAAAGACGCAGACAAAGTATAAGCTCTCGCTGAACGTATATATCTCCAAAACTAAGAATGCTATATAAAAACAGCTGACTGCAAAATTGTAGCTCATAAAATTTCCTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>271 213 129 125 117 102 23 12 8</canonical_bands>
                <polymorphic_bands>271 231 213 125 117 23 12 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAATTCAATTTCCAGACAA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTCCTCAACTTGTTTGATT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATTTTTCGCGCGCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAG</canonical_amplicon>
		<polymorphic_amplicon>CAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATTTTTCGCGCGCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTRAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3501</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>169053</contig_pos>
        <strand>+</strand>
        <context>GCGCAGACAT[A/G]CAAATAAATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCCAAAATTTTTTTCAACTGTTTTTTTTTCATTTTTCGCGCGCAGACAT</left_flank>
        <right_flank>CAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTAAGCAATGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTTTAAAATTGGATTCCTGGGAAAACTTTATATAATGGATTTCCAATAAATCGAAATTTCAAAAAAATCAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATTTTTCGCGCGCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAGCAAATGTTTTTATTCCGAAAAAAAATCAGTTCGATCAAGTTAAAATTGGCACTGATGGCTCCGCCTCTTTTTGACGGCGAACTCTGGAAAAAAACGAACCGATTCGACCAAACAAACCAGTGGCATCCAGCTCATGCATGCCGGCTTCCTGAAAAGTTAATTATCTAATTAAGTAATTAAGATATCAAGAAACGGTCAATTAAAAAAATGTTGGAAATTTCATGGGTTCTAATTTTGTAGTAAACAATTTTTTGATTGCTTTTTTAGTTTTGGAGATATACGCTGTCAAAGTCGGACGATACCAAAAAGACGCAGACAAAGTATAAGCTCTCGCTGAACGTATATATCTCCAAAACTAAGAATGCTATATA</canonical>
            <polymorphic>AGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTTTAAAATTGGATTCCTGGGAAAACTTTATATAATGGATTTCCAATAAATCGAAATTTCAAAAAAATCAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATTTTTCGCGCGCAGACATRCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAGCAAATGTTTTTATTCCGAAAAAAAATCAGTTCGATCAAGTTAAAATTGGCACTGATGGCTCCGCCTCTTTTTGACGGCGAACTCTGGAAAAAAACGAACCGATTCGACCAAACAAACCAGTGGCATCCAGCTCATGCATGCCGGCTTCCTGAAAAGTTAATTATCTAATTAAGTAATTAAGATATCAAGAAACGGTCAATTAAAAAAATGTTGGAAATTTCATGGGTTCTAATTTTGTAGTAAACAATTTTTTGATTGCTTTTTTAGTTTTGGAGATATACGCTGTCAAAGTCGGACGATACCAAAAAGACGCAGACAAAGTATAAGCTCTCGCTGAACGTATATATCTCCAAAACTAAGAATGCTATATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>500 269 231</canonical_bands>
                <polymorphic_bands>769 231</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>497 170 150 95 84 4</canonical_bands>
                <polymorphic_bands>592 170 150 84 4</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 240 235 25</canonical_bands>
                <polymorphic_bands>525 240 235</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAATTCAATTTCCAGACAA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTCCTCAACTTGTTTGATT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATTTTTCGCGCGCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAG</canonical_amplicon>
		<polymorphic_amplicon>CAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATTTTTCGCGCGCAGACATRCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3502</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>169040</contig_pos>
        <strand></strand>
        <context>TTTCATWTTT[C/T]GCGCGCAGAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATTTTT</left_flank>
        <right_flank>GCGCGCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGACAGG</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTTTAAAATTGGATTCCTGGGAAAACTTTATATAATGGATTTCCAATAAATCGAAATTTCAAAAAAATCAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATTTTTCGCGCGCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAGCAAATGTTTTTATTCCGAAAAAAAATCAGTTCGATCAAGTTAAAATTGGCACTGATGGCTCCGCCTCTTTTTGACGGCGAACTCTGGAAAAAAACGAACCGATTCGACCAAACAAACCAGTGGCATCCAGCTCATGCATGCCGGCTTCCTGAAAAGTTAATTATCTAATTAAGTAATTAAGATATCAAGAAACGGTCAATTAAAAAAATGTTGGAAATTTCATGGGTTCTAATTTTGTAGTAAACAATTTTTTGATTGCTTTTTTAGTTTTGGAGATATACGCTGTCAAAGTCGGACGATACCAAAAAGACGCAGACAAAGTATAAGCTCTCGCTGAACGTATATATCTCCAAAACTA</canonical>
            <polymorphic>AATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTTTAAAATTGGATTCCTGGGAAAACTTTATATAATGGATTTCCAATAAATCGAAATTTCAAAAAAATCAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATTTTTYGCGCGCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAGCAAATGTTTTTATTCCGAAAAAAAATCAGTTCGATCAAGTTAAAATTGGCACTGATGGCTCCGCCTCTTTTTGACGGCGAACTCTGGAAAAAAACGAACCGATTCGACCAAACAAACCAGTGGCATCCAGCTCATGCATGCCGGCTTCCTGAAAAGTTAATTATCTAATTAAGTAATTAAGATATCAAGAAACGGTCAATTAAAAAAATGTTGGAAATTTCATGGGTTCTAATTTTGTAGTAAACAATTTTTTGATTGCTTTTTTAGTTTTGGAGATATACGCTGTCAAAGTCGGACGATACCAAAAAGACGCAGACAAAGTATAAGCTCTCGCTGAACGTATATATCTCCAAAACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 497 2</canonical_bands>
                <polymorphic_bands>503 497</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAATTCAATTTCCAGACAA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTCCTCAACTTGTTTGATT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATTTTTCGCGCGCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAG</canonical_amplicon>
		<polymorphic_amplicon>CAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATTTTTYGCGCGCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3503</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>169036</contig_pos>
        <strand></strand>
        <context>TTTTTTTCAT[T/A]TTTYGCGCGC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCAT</left_flank>
        <right_flank>TTTCGCGCGCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTTTAAAATTGGATTCCTGGGAAAACTTTATATAATGGATTTCCAATAAATCGAAATTTCAAAAAAATCAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATTTTTCGCGCGCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAGCAAATGTTTTTATTCCGAAAAAAAATCAGTTCGATCAAGTTAAAATTGGCACTGATGGCTCCGCCTCTTTTTGACGGCGAACTCTGGAAAAAAACGAACCGATTCGACCAAACAAACCAGTGGCATCCAGCTCATGCATGCCGGCTTCCTGAAAAGTTAATTATCTAATTAAGTAATTAAGATATCAAGAAACGGTCAATTAAAAAAATGTTGGAAATTTCATGGGTTCTAATTTTGTAGTAAACAATTTTTTGATTGCTTTTTTAGTTTTGGAGATATACGCTGTCAAAGTCGGACGATACCAAAAAGACGCAGACAAAGTATAAGCTCTCGCTGAACGTATATATCTCCAAA</canonical>
            <polymorphic>CAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTTTAAAATTGGATTCCTGGGAAAACTTTATATAATGGATTTCCAATAAATCGAAATTTCAAAAAAATCAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATWTTTCGCGCGCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAGCAAATGTTTTTATTCCGAAAAAAAATCAGTTCGATCAAGTTAAAATTGGCACTGATGGCTCCGCCTCTTTTTGACGGCGAACTCTGGAAAAAAACGAACCGATTCGACCAAACAAACCAGTGGCATCCAGCTCATGCATGCCGGCTTCCTGAAAAGTTAATTATCTAATTAAGTAATTAAGATATCAAGAAACGGTCAATTAAAAAAATGTTGGAAATTTCATGGGTTCTAATTTTGTAGTAAACAATTTTTTGATTGCTTTTTTAGTTTTGGAGATATACGCTGTCAAAGTCGGACGATACCAAAAAGACGCAGACAAAGTATAAGCTCTCGCTGAACGTATATATCTCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAATTCAATTTCCAGACAA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTCCTCAACTTGTTTGATT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATTTTTCGCGCGCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAG</canonical_amplicon>
		<polymorphic_amplicon>CAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATWTTTCGCGCGCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3504</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>129284</contig_pos>
        <strand></strand>
        <context>taaattgtct[T/C]aaagctaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCAGTAAACCATTTTTCAATATCTGTTACAGGAATCGAGATAAATTGTCT</left_flank>
        <right_flank>AAAGCTAAAAGTTAAGGAGCGTTTTATTAGACCGTTTCGCAATTTTTTTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGTTTATTTTTTTCTGAATTTTGTTCAGAAAGTTTTTTATTTTTCGTTAAGACTACAATATATGCACAGCGCGTCAGAAGGGAAGGAAACGTCTAGAAAAATAGTCGAAGTCTGAAGAAAAAGTTTGAGAACTTTTAGACTTTTTTCAGTTTCAAAAAGTTCACTAATTCAAGATTTTTTTGAAATTCTTCGATTGTTGATTTGTGTAGCCAATTTACACATAATACAAACAAAGAATAGAAAACCAAAATTTCCAGAGACTTCGAAAAATTCAGACAGTCTCATAATCTATTTTTTTTTAGAAATTCCCCACCCGCAACCGAATTACCGTAATAGAATGCCCTCTCCCAAATCGCCAACTTTGAACCCATAGATCTCGTTTTCTGCGAAAGATATCAAAAAGTGGTCAATGGACAATATGTTTATCTTGATGCCAATATTATTTTGTCAGTAAACCATTTTTCAATATCTGTTACAGGAATCGAGATAAATTGTCTTAAAGCTAAAAGTTAAGGAGCGTTTTATTAGACCGTTTCGCAATTTTTTTTCTTTCCCTTCCACTTTTAAATGTGAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCATTCAGACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGGTATAAATTGAATAATTCATGTAGAACCCGGAAAATAAGTCCAATGAAACGGCAAAAACATTTATTTCTCAAAAGTTGAATTTTCAAAGTTCTTCCCTCTTTCAAATTGAAATAATTAATCAAAAGAAAAATGTCTTCAAAATATATGTAGGCGAAAATTATAAATCATCTAAAATCGTATAATTTTTTTAGAGAGACAAACATGTTTTATTTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTTTTAAAAGTTATCTATTTTCCTAATATTATTGCAAAAAAATTTAAAAGAAATCCGAAATCCCCGAAAAAC</canonical>
            <polymorphic>ATTGTTTATTTTTTTCTGAATTTTGTTCAGAAAGTTTTTTATTTTTCGTTAAGACTACAATATATGCACAGCGCGTCAGAAGGGAAGGAAACGTCTAGAAAAATAGTCGAAGTCTGAAGAAAAAGTTTGAGAACTTTTAGACTTTTTTCAGTTTCAAAAAGTTCACTAATTCAAGATTTTTTTGAAATTCTTCGATTGTTGATTTGTGTAGCCAATTTACACATAATACAAACAAAGAATAGAAAACCAAAATTTCCAGAGACTTCGAAAAATTCAGACAGTCTCATAATCTATTTTTTTTTAGAAATTCCCCACCCGCAACCGAATTACCGTAATAGAATGCCCTCTCCCAAATCGCCAACTTTGAACCCATAGATCTCGTTTTCTGCGAAAGATATCAAAAAGTGGTCAATGGACAATATGTTTATCTTGATGCCAATATTATTTTGTCAGTAAACCATTTTTCAATATCTGTTACAGGAATCGAGATAAATTGTCTYAAAGCTAAAAGTTAAGGAGCGTTTTATTAGACCGTTTCGCAATTTTTTTTCTTTCCCTTCCACTTTTAAATGTGAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCATTCAGACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGGTATAAATTGAATAATTCATGTAGAACCCGGAAAATAAGTCCAATGAAACGGCAAAAACATTTATTTCTCAAAAGTTGAATTTTCAAAGTTCTTCCCTCTTTCAAATTGAAATAATTAATCAAAAGAAAAATGTCTTCAAAATATATGTAGGCGAAAATTATAAATCATCTAAAATCGTATAATTTTTTTAGAGAGACAAACATGTTTTATTTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTTTTAAAAGTTATCTATTTTCCTAATATTATTGCAAAAAAATTTAAAAGAAATCCGAAATCCCCGAAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>450 132 97 92 54 49 40 35 28 13 10</canonical_bands>
                <polymorphic_bands>463 132 97 92 54 49 40 35 28 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAGACAGTCTCATAATCTATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TAAAAGTGGAAGGGAAAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>296</pcr_amplicon_size>
		<canonical_amplicon>TTCAGACAGTCTCATAATCTATTTTTTTTTAGAAATTCCCCACCCGCAACCGAATTACCGTAATAGAATGCCCTCTCCCAAATCGCCAACTTTGAACCCATAGATCTCGTTTTCTGCGAAAGATATCAAAAAGTGGTCAATGGACAATATGTTTATCTTGATGCCAATATTATTTTGTCAGTAAACCATTTTTCAATATCTGTTACAGGAATCGAGATAAATTGTCTTAAAGCTAAAAGTTAAGGAGCGTTTTATTAGACCGTTTCGCAATTTTTTTTCTTTCCCTTCCACTTTTA</canonical_amplicon>
		<polymorphic_amplicon>TTCAGACAGTCTCATAATCTATTTTTTTTTAGAAATTCCCCACCCGCAACCGAATTACCGTAATAGAATGCCCTCTCCCAAATCGCCAACTTTGAACCCATAGATCTCGTTTTCTGCGAAAGATATCAAAAAGTGGTCAATGGACAATATGTTTATCTTGATGCCAATATTATTTTGTCAGTAAACCATTTTTCAATATCTGTTACAGGAATCGAGATAAATTGTCTYAAAGCTAAAAGTTAAGGAGCGTTTTATTAGACCGTTTCGCAATTTTTTTTCTTTCCCTTCCACTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3505</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>129306</contig_pos>
        <strand></strand>
        <context>ttaaggagcg[T/C]tttattaGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTGTTACAGGAATCGAGATAAATTGTCTTAAAGCTAAAAGTTAAGGAGCG</left_flank>
        <right_flank>TTTATTAGACCGTTTCGCAATTTTTTTTCTTTCCCTTCCACTTTTAAATG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTCAGAAAGTTTTTTATTTTTCGTTAAGACTACAATATATGCACAGCGCGTCAGAAGGGAAGGAAACGTCTAGAAAAATAGTCGAAGTCTGAAGAAAAAGTTTGAGAACTTTTAGACTTTTTTCAGTTTCAAAAAGTTCACTAATTCAAGATTTTTTTGAAATTCTTCGATTGTTGATTTGTGTAGCCAATTTACACATAATACAAACAAAGAATAGAAAACCAAAATTTCCAGAGACTTCGAAAAATTCAGACAGTCTCATAATCTATTTTTTTTTAGAAATTCCCCACCCGCAACCGAATTACCGTAATAGAATGCCCTCTCCCAAATCGCCAACTTTGAACCCATAGATCTCGTTTTCTGCGAAAGATATCAAAAAGTGGTCAATGGACAATATGTTTATCTTGATGCCAATATTATTTTGTCAGTAAACCATTTTTCAATATCTGTTACAGGAATCGAGATAAATTGTCTTAAAGCTAAAAGTTAAGGAGCGTTTTATTAGACCGTTTCGCAATTTTTTTTCTTTCCCTTCCACTTTTAAATGTGAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCATTCAGACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGGTATAAATTGAATAATTCATGTAGAACCCGGAAAATAAGTCCAATGAAACGGCAAAAACATTTATTTCTCAAAAGTTGAATTTTCAAAGTTCTTCCCTCTTTCAAATTGAAATAATTAATCAAAAGAAAAATGTCTTCAAAATATATGTAGGCGAAAATTATAAATCATCTAAAATCGTATAATTTTTTTAGAGAGACAAACATGTTTTATTTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTTTTAAAAGTTATCTATTTTCCTAATATTATTGCAAAAAAATTTAAAAGAAATCCGAAATCCCCGAAAAACGCCGTTGAAAATGAAAAAAATT</canonical>
            <polymorphic>TTGTTCAGAAAGTTTTTTATTTTTCGTTAAGACTACAATATATGCACAGCGCGTCAGAAGGGAAGGAAACGTCTAGAAAAATAGTCGAAGTCTGAAGAAAAAGTTTGAGAACTTTTAGACTTTTTTCAGTTTCAAAAAGTTCACTAATTCAAGATTTTTTTGAAATTCTTCGATTGTTGATTTGTGTAGCCAATTTACACATAATACAAACAAAGAATAGAAAACCAAAATTTCCAGAGACTTCGAAAAATTCAGACAGTCTCATAATCTATTTTTTTTTAGAAATTCCCCACCCGCAACCGAATTACCGTAATAGAATGCCCTCTCCCAAATCGCCAACTTTGAACCCATAGATCTCGTTTTCTGCGAAAGATATCAAAAAGTGGTCAATGGACAATATGTTTATCTTGATGCCAATATTATTTTGTCAGTAAACCATTTTTCAATATCTGTTACAGGAATCGAGATAAATTGTCTTAAAGCTAAAAGTTAAGGAGCGYTTTATTAGACCGTTTCGCAATTTTTTTTCTTTCCCTTCCACTTTTAAATGTGAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCATTCAGACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGGTATAAATTGAATAATTCATGTAGAACCCGGAAAATAAGTCCAATGAAACGGCAAAAACATTTATTTCTCAAAAGTTGAATTTTCAAAGTTCTTCCCTCTTTCAAATTGAAATAATTAATCAAAAGAAAAATGTCTTCAAAATATATGTAGGCGAAAATTATAAATCATCTAAAATCGTATAATTTTTTTAGAGAGACAAACATGTTTTATTTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTTTTAAAAGTTATCTATTTTCCTAATATTATTGCAAAAAAATTTAAAAGAAATCCGAAATCCCCGAAAAACGCCGTTGAAAATGAAAAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAGACAGTCTCATAATCTATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCCGGGTTCTACATGAATTA</pcr_primer_p2>
		<pcr_amplicon_size>434</pcr_amplicon_size>
		<canonical_amplicon>TTCAGACAGTCTCATAATCTATTTTTTTTTAGAAATTCCCCACCCGCAACCGAATTACCGTAATAGAATGCCCTCTCCCAAATCGCCAACTTTGAACCCATAGATCTCGTTTTCTGCGAAAGATATCAAAAAGTGGTCAATGGACAATATGTTTATCTTGATGCCAATATTATTTTGTCAGTAAACCATTTTTCAATATCTGTTACAGGAATCGAGATAAATTGTCTTAAAGCTAAAAGTTAAGGAGCGTTTTATTAGACCGTTTCGCAATTTTTTTTCTTTCCCTTCCACTTTTAAATGTGAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCATTCAGACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGGTATAAATTGAATAATTCATGTAGAACCCGGA</canonical_amplicon>
		<polymorphic_amplicon>TTCAGACAGTCTCATAATCTATTTTTTTTTAGAAATTCCCCACCCGCAACCGAATTACCGTAATAGAATGCCCTCTCCCAAATCGCCAACTTTGAACCCATAGATCTCGTTTTCTGCGAAAGATATCAAAAAGTGGTCAATGGACAATATGTTTATCTTGATGCCAATATTATTTTGTCAGTAAACCATTTTTCAATATCTGTTACAGGAATCGAGATAAATTGTCTTAAAGCTAAAAGTTAAGGAGCGYTTTATTAGACCGTTTCGCAATTTTTTTTCTTTCCCTTCCACTTTTAAATGTGAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCATTCAGACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGGTATAAATTGAATAATTCATGTAGAACCCGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3506</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>129324</contig_pos>
        <strand></strand>
        <context>GACCGTTTCG[C/G]AATTTTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAAATTGTCTTAAAGCTAAAAGTTAAGGAGCGTTTTATTAGACCGTTTCG</left_flank>
        <right_flank>AATTTTTTTTCTTTCCCTTCCACTTTTAAATGTGAGGAACATGTAAATAA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTCGTTAAGACTACAATATATGCACAGCGCGTCAGAAGGGAAGGAAACGTCTAGAAAAATAGTCGAAGTCTGAAGAAAAAGTTTGAGAACTTTTAGACTTTTTTCAGTTTCAAAAAGTTCACTAATTCAAGATTTTTTTGAAATTCTTCGATTGTTGATTTGTGTAGCCAATTTACACATAATACAAACAAAGAATAGAAAACCAAAATTTCCAGAGACTTCGAAAAATTCAGACAGTCTCATAATCTATTTTTTTTTAGAAATTCCCCACCCGCAACCGAATTACCGTAATAGAATGCCCTCTCCCAAATCGCCAACTTTGAACCCATAGATCTCGTTTTCTGCGAAAGATATCAAAAAGTGGTCAATGGACAATATGTTTATCTTGATGCCAATATTATTTTGTCAGTAAACCATTTTTCAATATCTGTTACAGGAATCGAGATAAATTGTCTTAAAGCTAAAAGTTAAGGAGCGTTTTATTAGACCGTTTCGCAATTTTTTTTCTTTCCCTTCCACTTTTAAATGTGAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCATTCAGACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGGTATAAATTGAATAATTCATGTAGAACCCGGAAAATAAGTCCAATGAAACGGCAAAAACATTTATTTCTCAAAAGTTGAATTTTCAAAGTTCTTCCCTCTTTCAAATTGAAATAATTAATCAAAAGAAAAATGTCTTCAAAATATATGTAGGCGAAAATTATAAATCATCTAAAATCGTATAATTTTTTTAGAGAGACAAACATGTTTTATTTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTTTTAAAAGTTATCTATTTTCCTAATATTATTGCAAAAAAATTTAAAAGAAATCCGAAATCCCCGAAAAACGCCGTTGAAAATGAAAAAAATTCAAAAAAGGTGCCGCCGG</canonical>
            <polymorphic>ATTTTTCGTTAAGACTACAATATATGCACAGCGCGTCAGAAGGGAAGGAAACGTCTAGAAAAATAGTCGAAGTCTGAAGAAAAAGTTTGAGAACTTTTAGACTTTTTTCAGTTTCAAAAAGTTCACTAATTCAAGATTTTTTTGAAATTCTTCGATTGTTGATTTGTGTAGCCAATTTACACATAATACAAACAAAGAATAGAAAACCAAAATTTCCAGAGACTTCGAAAAATTCAGACAGTCTCATAATCTATTTTTTTTTAGAAATTCCCCACCCGCAACCGAATTACCGTAATAGAATGCCCTCTCCCAAATCGCCAACTTTGAACCCATAGATCTCGTTTTCTGCGAAAGATATCAAAAAGTGGTCAATGGACAATATGTTTATCTTGATGCCAATATTATTTTGTCAGTAAACCATTTTTCAATATCTGTTACAGGAATCGAGATAAATTGTCTTAAAGCTAAAAGTTAAGGAGCGTTTTATTAGACCGTTTCGSAATTTTTTTTCTTTCCCTTCCACTTTTAAATGTGAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCATTCAGACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGGTATAAATTGAATAATTCATGTAGAACCCGGAAAATAAGTCCAATGAAACGGCAAAAACATTTATTTCTCAAAAGTTGAATTTTCAAAGTTCTTCCCTCTTTCAAATTGAAATAATTAATCAAAAGAAAAATGTCTTCAAAATATATGTAGGCGAAAATTATAAATCATCTAAAATCGTATAATTTTTTTAGAGAGACAAACATGTTTTATTTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTTTTAAAAGTTATCTATTTTCCTAATATTATTGCAAAAAAATTTAAAAGAAATCCGAAATCCCCGAAAAACGCCGTTGAAAATGAAAAAAATTCAAAAAAGGTGCCGCCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAGACAGTCTCATAATCTATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCCGGGTTCTACATGAATTA</pcr_primer_p2>
		<pcr_amplicon_size>434</pcr_amplicon_size>
		<canonical_amplicon>TTCAGACAGTCTCATAATCTATTTTTTTTTAGAAATTCCCCACCCGCAACCGAATTACCGTAATAGAATGCCCTCTCCCAAATCGCCAACTTTGAACCCATAGATCTCGTTTTCTGCGAAAGATATCAAAAAGTGGTCAATGGACAATATGTTTATCTTGATGCCAATATTATTTTGTCAGTAAACCATTTTTCAATATCTGTTACAGGAATCGAGATAAATTGTCTTAAAGCTAAAAGTTAAGGAGCGTTTTATTAGACCGTTTCGCAATTTTTTTTCTTTCCCTTCCACTTTTAAATGTGAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCATTCAGACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGGTATAAATTGAATAATTCATGTAGAACCCGGA</canonical_amplicon>
		<polymorphic_amplicon>TTCAGACAGTCTCATAATCTATTTTTTTTTAGAAATTCCCCACCCGCAACCGAATTACCGTAATAGAATGCCCTCTCCCAAATCGCCAACTTTGAACCCATAGATCTCGTTTTCTGCGAAAGATATCAAAAAGTGGTCAATGGACAATATGTTTATCTTGATGCCAATATTATTTTGTCAGTAAACCATTTTTCAATATCTGTTACAGGAATCGAGATAAATTGTCTTAAAGCTAAAAGTTAAGGAGCGTTTTATTAGACCGTTTCGSAATTTTTTTTCTTTCCCTTCCACTTTTAAATGTGAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCATTCAGACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGGTATAAATTGAATAATTCATGTAGAACCCGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3507</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>129357</contig_pos>
        <strand></strand>
        <context>CTTTTAAATG[T/C]GAGGAACATG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTATTAGACCGTTTCGCAATTTTTTTTCTTTCCCTTCCACTTTTAAATG</left_flank>
        <right_flank>GAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTCAGAAGGGAAGGAAACGTCTAGAAAAATAGTCGAAGTCTGAAGAAAAAGTTTGAGAACTTTTAGACTTTTTTCAGTTTCAAAAAGTTCACTAATTCAAGATTTTTTTGAAATTCTTCGATTGTTGATTTGTGTAGCCAATTTACACATAATACAAACAAAGAATAGAAAACCAAAATTTCCAGAGACTTCGAAAAATTCAGACAGTCTCATAATCTATTTTTTTTTAGAAATTCCCCACCCGCAACCGAATTACCGTAATAGAATGCCCTCTCCCAAATCGCCAACTTTGAACCCATAGATCTCGTTTTCTGCGAAAGATATCAAAAAGTGGTCAATGGACAATATGTTTATCTTGATGCCAATATTATTTTGTCAGTAAACCATTTTTCAATATCTGTTACAGGAATCGAGATAAATTGTCTTAAAGCTAAAAGTTAAGGAGCGTTTTATTAGACCGTTTCGCAATTTTTTTTCTTTCCCTTCCACTTTTAAATGTGAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCATTCAGACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGGTATAAATTGAATAATTCATGTAGAACCCGGAAAATAAGTCCAATGAAACGGCAAAAACATTTATTTCTCAAAAGTTGAATTTTCAAAGTTCTTCCCTCTTTCAAATTGAAATAATTAATCAAAAGAAAAATGTCTTCAAAATATATGTAGGCGAAAATTATAAATCATCTAAAATCGTATAATTTTTTTAGAGAGACAAACATGTTTTATTTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTTTTAAAAGTTATCTATTTTCCTAATATTATTGCAAAAAAATTTAAAAGAAATCCGAAATCCCCGAAAAACGCCGTTGAAAATGAAAAAAATTCAAAAAAGGTGCCGCCGGGGGACGAGGATTTGAATTCCCGCGCAGTGAGAA</canonical>
            <polymorphic>CGTCAGAAGGGAAGGAAACGTCTAGAAAAATAGTCGAAGTCTGAAGAAAAAGTTTGAGAACTTTTAGACTTTTTTCAGTTTCAAAAAGTTCACTAATTCAAGATTTTTTTGAAATTCTTCGATTGTTGATTTGTGTAGCCAATTTACACATAATACAAACAAAGAATAGAAAACCAAAATTTCCAGAGACTTCGAAAAATTCAGACAGTCTCATAATCTATTTTTTTTTAGAAATTCCCCACCCGCAACCGAATTACCGTAATAGAATGCCCTCTCCCAAATCGCCAACTTTGAACCCATAGATCTCGTTTTCTGCGAAAGATATCAAAAAGTGGTCAATGGACAATATGTTTATCTTGATGCCAATATTATTTTGTCAGTAAACCATTTTTCAATATCTGTTACAGGAATCGAGATAAATTGTCTTAAAGCTAAAAGTTAAGGAGCGTTTTATTAGACCGTTTCGCAATTTTTTTTCTTTCCCTTCCACTTTTAAATGYGAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCATTCAGACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGGTATAAATTGAATAATTCATGTAGAACCCGGAAAATAAGTCCAATGAAACGGCAAAAACATTTATTTCTCAAAAGTTGAATTTTCAAAGTTCTTCCCTCTTTCAAATTGAAATAATTAATCAAAAGAAAAATGTCTTCAAAATATATGTAGGCGAAAATTATAAATCATCTAAAATCGTATAATTTTTTTAGAGAGACAAACATGTTTTATTTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTTTTAAAAGTTATCTATTTTCCTAATATTATTGCAAAAAAATTTAAAAGAAATCCGAAATCCCCGAAAAACGCCGTTGAAAATGAAAAAAATTCAAAAAAGGTGCCGCCGGGGGACGAGGATTTGAATTCCCGCGCAGTGAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>365 155 94 93 93 92 43 36 13 12 4</canonical_bands>
                <polymorphic_bands>365 155 106 93 93 92 43 36 13 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAGACAGTCTCATAATCTATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCCGGGTTCTACATGAATTA</pcr_primer_p2>
		<pcr_amplicon_size>434</pcr_amplicon_size>
		<canonical_amplicon>TTCAGACAGTCTCATAATCTATTTTTTTTTAGAAATTCCCCACCCGCAACCGAATTACCGTAATAGAATGCCCTCTCCCAAATCGCCAACTTTGAACCCATAGATCTCGTTTTCTGCGAAAGATATCAAAAAGTGGTCAATGGACAATATGTTTATCTTGATGCCAATATTATTTTGTCAGTAAACCATTTTTCAATATCTGTTACAGGAATCGAGATAAATTGTCTTAAAGCTAAAAGTTAAGGAGCGTTTTATTAGACCGTTTCGCAATTTTTTTTCTTTCCCTTCCACTTTTAAATGTGAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCATTCAGACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGGTATAAATTGAATAATTCATGTAGAACCCGGA</canonical_amplicon>
		<polymorphic_amplicon>TTCAGACAGTCTCATAATCTATTTTTTTTTAGAAATTCCCCACCCGCAACCGAATTACCGTAATAGAATGCCCTCTCCCAAATCGCCAACTTTGAACCCATAGATCTCGTTTTCTGCGAAAGATATCAAAAAGTGGTCAATGGACAATATGTTTATCTTGATGCCAATATTATTTTGTCAGTAAACCATTTTTCAATATCTGTTACAGGAATCGAGATAAATTGTCTTAAAGCTAAAAGTTAAGGAGCGTTTTATTAGACCGTTTCGCAATTTTTTTTCTTTCCCTTCCACTTTTAAATGYGAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCATTCAGACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGGTATAAATTGAATAATTCATGTAGAACCCGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3508</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>129409</contig_pos>
        <strand></strand>
        <context>AATTTTTCAT[T/A]CAGACTCTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCAT</left_flank>
        <right_flank>CAGACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAGAACTTTTAGACTTTTTTCAGTTTCAAAAAGTTCACTAATTCAAGATTTTTTTGAAATTCTTCGATTGTTGATTTGTGTAGCCAATTTACACATAATACAAACAAAGAATAGAAAACCAAAATTTCCAGAGACTTCGAAAAATTCAGACAGTCTCATAATCTATTTTTTTTTAGAAATTCCCCACCCGCAACCGAATTACCGTAATAGAATGCCCTCTCCCAAATCGCCAACTTTGAACCCATAGATCTCGTTTTCTGCGAAAGATATCAAAAAGTGGTCAATGGACAATATGTTTATCTTGATGCCAATATTATTTTGTCAGTAAACCATTTTTCAATATCTGTTACAGGAATCGAGATAAATTGTCTTAAAGCTAAAAGTTAAGGAGCGTTTTATTAGACCGTTTCGCAATTTTTTTTCTTTCCCTTCCACTTTTAAATGTGAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCATTCAGACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGGTATAAATTGAATAATTCATGTAGAACCCGGAAAATAAGTCCAATGAAACGGCAAAAACATTTATTTCTCAAAAGTTGAATTTTCAAAGTTCTTCCCTCTTTCAAATTGAAATAATTAATCAAAAGAAAAATGTCTTCAAAATATATGTAGGCGAAAATTATAAATCATCTAAAATCGTATAATTTTTTTAGAGAGACAAACATGTTTTATTTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTTTTAAAAGTTATCTATTTTCCTAATATTATTGCAAAAAAATTTAAAAGAAATCCGAAATCCCCGAAAAACGCCGTTGAAAATGAAAAAAATTCAAAAAAGGTGCCGCCGGGGGACGAGGATTTGAATTCCCGCGCAGTGAGAAACCTAGGCCACGGCGCCTGAAAGCATTATTTTCNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>TTTGAGAACTTTTAGACTTTTTTCAGTTTCAAAAAGTTCACTAATTCAAGATTTTTTTGAAATTCTTCGATTGTTGATTTGTGTAGCCAATTTACACATAATACAAACAAAGAATAGAAAACCAAAATTTCCAGAGACTTCGAAAAATTCAGACAGTCTCATAATCTATTTTTTTTTAGAAATTCCCCACCCGCAACCGAATTACCGTAATAGAATGCCCTCTCCCAAATCGCCAACTTTGAACCCATAGATCTCGTTTTCTGCGAAAGATATCAAAAAGTGGTCAATGGACAATATGTTTATCTTGATGCCAATATTATTTTGTCAGTAAACCATTTTTCAATATCTGTTACAGGAATCGAGATAAATTGTCTTAAAGCTAAAAGTTAAGGAGCGTTTTATTAGACCGTTTCGCAATTTTTTTTCTTTCCCTTCCACTTTTAAATGTGAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCATWCAGACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGGTATAAATTGAATAATTCATGTAGAACCCGGAAAATAAGTCCAATGAAACGGCAAAAACATTTATTTCTCAAAAGTTGAATTTTCAAAGTTCTTCCCTCTTTCAAATTGAAATAATTAATCAAAAGAAAAATGTCTTCAAAATATATGTAGGCGAAAATTATAAATCATCTAAAATCGTATAATTTTTTTAGAGAGACAAACATGTTTTATTTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTTTTAAAAGTTATCTATTTTCCTAATATTATTGCAAAAAAATTTAAAAGAAATCCGAAATCCCCGAAAAACGCCGTTGAAAATGAAAAAAATTCAAAAAAGGTGCCGCCGGGGGACGAGGATTTGAATTCCCGCGCAGTGAGAAACCTAGGCCACGGCGCCTGAAAGCATTATTTTCNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>351 274 151 141 83</canonical_bands>
                <polymorphic_bands>625 151 141 83</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTTCCCTTCCACTTTTA</pcr_primer_p1>
		<pcr_primer_p2>ATTTGAAAGAGGGAAGAACTTT</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTTCCCTTCCACTTTTAAATGTGAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCATTCAGACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGGTATAAATTGAATAATTCATGTAGAACCCGGAAAATAAGTCCAATGAAACGGCAAAAACATTTATTTCTCAAAAGTTGAATTTTCAAAGTTCTTCCCTCTTTCAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTTCCCTTCCACTTTTAAATGTGAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCATWCAGACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGGTATAAATTGAATAATTCATGTAGAACCCGGAAAATAAGTCCAATGAAACGGCAAAAACATTTATTTCTCAAAAGTTGAATTTTCAAAGTTCTTCCCTCTTTCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3509</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>129439</contig_pos>
        <strand></strand>
        <context>GATTTGACAA[C/A]ATTTAAAATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TCCGGAATCTAATTTTTCATTCAGACTCTAATGTTCATTTGATTTGACAA</left_flank>
        <right_flank>ATTTAAAATGGTGTATTTGGTATAAATTGAATAATTCATGTAGAACCCGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAGTTCACTAATTCAAGATTTTTTTGAAATTCTTCGATTGTTGATTTGTGTAGCCAATTTACACATAATACAAACAAAGAATAGAAAACCAAAATTTCCAGAGACTTCGAAAAATTCAGACAGTCTCATAATCTATTTTTTTTTAGAAATTCCCCACCCGCAACCGAATTACCGTAATAGAATGCCCTCTCCCAAATCGCCAACTTTGAACCCATAGATCTCGTTTTCTGCGAAAGATATCAAAAAGTGGTCAATGGACAATATGTTTATCTTGATGCCAATATTATTTTGTCAGTAAACCATTTTTCAATATCTGTTACAGGAATCGAGATAAATTGTCTTAAAGCTAAAAGTTAAGGAGCGTTTTATTAGACCGTTTCGCAATTTTTTTTCTTTCCCTTCCACTTTTAAATGTGAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCATTCAGACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGGTATAAATTGAATAATTCATGTAGAACCCGGAAAATAAGTCCAATGAAACGGCAAAAACATTTATTTCTCAAAAGTTGAATTTTCAAAGTTCTTCCCTCTTTCAAATTGAAATAATTAATCAAAAGAAAAATGTCTTCAAAATATATGTAGGCGAAAATTATAAATCATCTAAAATCGTATAATTTTTTTAGAGAGACAAACATGTTTTATTTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTTTTAAAAGTTATCTATTTTCCTAATATTATTGCAAAAAAATTTAAAAGAAATCCGAAATCCCCGAAAAACGCCGTTGAAAATGAAAAAAATTCAAAAAAGGTGCCGCCGGGGGACGAGGATTTGAATTCCCGCGCAGTGAGAAACCTAGGCCACGGCGCCTGAAAGCATTATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>AAAAAGTTCACTAATTCAAGATTTTTTTGAAATTCTTCGATTGTTGATTTGTGTAGCCAATTTACACATAATACAAACAAAGAATAGAAAACCAAAATTTCCAGAGACTTCGAAAAATTCAGACAGTCTCATAATCTATTTTTTTTTAGAAATTCCCCACCCGCAACCGAATTACCGTAATAGAATGCCCTCTCCCAAATCGCCAACTTTGAACCCATAGATCTCGTTTTCTGCGAAAGATATCAAAAAGTGGTCAATGGACAATATGTTTATCTTGATGCCAATATTATTTTGTCAGTAAACCATTTTTCAATATCTGTTACAGGAATCGAGATAAATTGTCTTAAAGCTAAAAGTTAAGGAGCGTTTTATTAGACCGTTTCGCAATTTTTTTTCTTTCCCTTCCACTTTTAAATGTGAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCATTCAGACTCTAATGTTCATTTGATTTGACAAMATTTAAAATGGTGTATTTGGTATAAATTGAATAATTCATGTAGAACCCGGAAAATAAGTCCAATGAAACGGCAAAAACATTTATTTCTCAAAAGTTGAATTTTCAAAGTTCTTCCCTCTTTCAAATTGAAATAATTAATCAAAAGAAAAATGTCTTCAAAATATATGTAGGCGAAAATTATAAATCATCTAAAATCGTATAATTTTTTTAGAGAGACAAACATGTTTTATTTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTTTTAAAAGTTATCTATTTTCCTAATATTATTGCAAAAAAATTTAAAAGAAATCCGAAATCCCCGAAAAACGCCGTTGAAAATGAAAAAAATTCAAAAAAGGTGCCGCCGGGGGACGAGGATTTGAATTCCCGCGCAGTGAGAAACCTAGGCCACGGCGCCTGAAAGCATTATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTTCCCTTCCACTTTTA</pcr_primer_p1>
		<pcr_primer_p2>ATTTGAAAGAGGGAAGAACTTT</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTTCCCTTCCACTTTTAAATGTGAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCATTCAGACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGGTATAAATTGAATAATTCATGTAGAACCCGGAAAATAAGTCCAATGAAACGGCAAAAACATTTATTTCTCAAAAGTTGAATTTTCAAAGTTCTTCCCTCTTTCAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTTCCCTTCCACTTTTAAATGTGAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCATTCAGACTCTAATGTTCATTTGATTTGACAAMATTTAAAATGGTGTATTTGGTATAAATTGAATAATTCATGTAGAACCCGGAAAATAAGTCCAATGAAACGGCAAAAACATTTATTTCTCAAAAGTTGAATTTTCAAAGTTCTTCCCTCTTTCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3515</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>129460</contig_pos>
        <strand></strand>
        <context>GTGTATTTGG[T/C]AYAAATTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAGACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGG</left_flank>
        <right_flank>ATAAATTGAATAATTCATGTAGAACCCGGAAAATAAGTCCAATGAAACGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTGAAATTCTTCGATTGTTGATTTGTGTAGCCAATTTACACATAATACAAACAAAGAATAGAAAACCAAAATTTCCAGAGACTTCGAAAAATTCAGACAGTCTCATAATCTATTTTTTTTTAGAAATTCCCCACCCGCAACCGAATTACCGTAATAGAATGCCCTCTCCCAAATCGCCAACTTTGAACCCATAGATCTCGTTTTCTGCGAAAGATATCAAAAAGTGGTCAATGGACAATATGTTTATCTTGATGCCAATATTATTTTGTCAGTAAACCATTTTTCAATATCTGTTACAGGAATCGAGATAAATTGTCTTAAAGCTAAAAGTTAAGGAGCGTTTTATTAGACCGTTTCGCAATTTTTTTTCTTTCCCTTCCACTTTTAAATGTGAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCATTCAGACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGGTATAAATTGAATAATTCATGTAGAACCCGGAAAATAAGTCCAATGAAACGGCAAAAACATTTATTTCTCAAAAGTTGAATTTTCAAAGTTCTTCCCTCTTTCAAATTGAAATAATTAATCAAAAGAAAAATGTCTTCAAAATATATGTAGGCGAAAATTATAAATCATCTAAAATCGTATAATTTTTTTAGAGAGACAAACATGTTTTATTTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTTTTAAAAGTTATCTATTTTCCTAATATTATTGCAAAAAAATTTAAAAGAAATCCGAAATCCCCGAAAAACGCCGTTGAAAATGAAAAAAATTCAAAAAAGGTGCCGCCGGGGGACGAGGATTTGAATTCCCGCGCAGTGAGAAACCTAGGCCACGGCGCCTGAAAGCATTATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>TTTTTTTGAAATTCTTCGATTGTTGATTTGTGTAGCCAATTTACACATAATACAAACAAAGAATAGAAAACCAAAATTTCCAGAGACTTCGAAAAATTCAGACAGTCTCATAATCTATTTTTTTTTAGAAATTCCCCACCCGCAACCGAATTACCGTAATAGAATGCCCTCTCCCAAATCGCCAACTTTGAACCCATAGATCTCGTTTTCTGCGAAAGATATCAAAAAGTGGTCAATGGACAATATGTTTATCTTGATGCCAATATTATTTTGTCAGTAAACCATTTTTCAATATCTGTTACAGGAATCGAGATAAATTGTCTTAAAGCTAAAAGTTAAGGAGCGTTTTATTAGACCGTTTCGCAATTTTTTTTCTTTCCCTTCCACTTTTAAATGTGAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCATTCAGACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGGYATAAATTGAATAATTCATGTAGAACCCGGAAAATAAGTCCAATGAAACGGCAAAAACATTTATTTCTCAAAAGTTGAATTTTCAAAGTTCTTCCCTCTTTCAAATTGAAATAATTAATCAAAAGAAAAATGTCTTCAAAATATATGTAGGCGAAAATTATAAATCATCTAAAATCGTATAATTTTTTTAGAGAGACAAACATGTTTTATTTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTTTTAAAAGTTATCTATTTTCCTAATATTATTGCAAAAAAATTTAAAAGAAATCCGAAATCCCCGAAAAACGCCGTTGAAAATGAAAAAAATTCAAAAAAGGTGCCGCCGGGGGACGAGGATTTGAATTCCCGCGCAGTGAGAAACCTAGGCCACGGCGCCTGAAAGCATTATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTTCCCTTCCACTTTTA</pcr_primer_p1>
		<pcr_primer_p2>ATTTGAAAGAGGGAAGAACTTT</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTTCCCTTCCACTTTTAAATGTGAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCATTCAGACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGGTATAAATTGAATAATTCATGTAGAACCCGGAAAATAAGTCCAATGAAACGGCAAAAACATTTATTTCTCAAAAGTTGAATTTTCAAAGTTCTTCCCTCTTTCAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTTCCCTTCCACTTTTAAATGTGAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCATTCAGACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGGYATAAATTGAATAATTCATGTAGAACCCGGAAAATAAGTCCAATGAAACGGCAAAAACATTTATTTCTCAAAAGTTGAATTTTCAAAGTTCTTCCCTCTTTCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3516</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>129462</contig_pos>
        <strand></strand>
        <context>GTATTTGGYA[T/C]AAATTGAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGGTA</left_flank>
        <right_flank>AAATTGAATAATTCATGTAGAACCCGGAAAATAAGTCCAATGAAACGGCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGAAATTCTTCGATTGTTGATTTGTGTAGCCAATTTACACATAATACAAACAAAGAATAGAAAACCAAAATTTCCAGAGACTTCGAAAAATTCAGACAGTCTCATAATCTATTTTTTTTTAGAAATTCCCCACCCGCAACCGAATTACCGTAATAGAATGCCCTCTCCCAAATCGCCAACTTTGAACCCATAGATCTCGTTTTCTGCGAAAGATATCAAAAAGTGGTCAATGGACAATATGTTTATCTTGATGCCAATATTATTTTGTCAGTAAACCATTTTTCAATATCTGTTACAGGAATCGAGATAAATTGTCTTAAAGCTAAAAGTTAAGGAGCGTTTTATTAGACCGTTTCGCAATTTTTTTTCTTTCCCTTCCACTTTTAAATGTGAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCATTCAGACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGGTATAAATTGAATAATTCATGTAGAACCCGGAAAATAAGTCCAATGAAACGGCAAAAACATTTATTTCTCAAAAGTTGAATTTTCAAAGTTCTTCCCTCTTTCAAATTGAAATAATTAATCAAAAGAAAAATGTCTTCAAAATATATGTAGGCGAAAATTATAAATCATCTAAAATCGTATAATTTTTTTAGAGAGACAAACATGTTTTATTTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTTTTAAAAGTTATCTATTTTCCTAATATTATTGCAAAAAAATTTAAAAGAAATCCGAAATCCCCGAAAAACGCCGTTGAAAATGAAAAAAATTCAAAAAAGGTGCCGCCGGGGGACGAGGATTTGAATTCCCGCGCAGTGAGAAACCTAGGCCACGGCGCCTGAAAGCATTATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>TTTTTGAAATTCTTCGATTGTTGATTTGTGTAGCCAATTTACACATAATACAAACAAAGAATAGAAAACCAAAATTTCCAGAGACTTCGAAAAATTCAGACAGTCTCATAATCTATTTTTTTTTAGAAATTCCCCACCCGCAACCGAATTACCGTAATAGAATGCCCTCTCCCAAATCGCCAACTTTGAACCCATAGATCTCGTTTTCTGCGAAAGATATCAAAAAGTGGTCAATGGACAATATGTTTATCTTGATGCCAATATTATTTTGTCAGTAAACCATTTTTCAATATCTGTTACAGGAATCGAGATAAATTGTCTTAAAGCTAAAAGTTAAGGAGCGTTTTATTAGACCGTTTCGCAATTTTTTTTCTTTCCCTTCCACTTTTAAATGTGAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCATTCAGACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGGTAYAAATTGAATAATTCATGTAGAACCCGGAAAATAAGTCCAATGAAACGGCAAAAACATTTATTTCTCAAAAGTTGAATTTTCAAAGTTCTTCCCTCTTTCAAATTGAAATAATTAATCAAAAGAAAAATGTCTTCAAAATATATGTAGGCGAAAATTATAAATCATCTAAAATCGTATAATTTTTTTAGAGAGACAAACATGTTTTATTTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTTTTAAAAGTTATCTATTTTCCTAATATTATTGCAAAAAAATTTAAAAGAAATCCGAAATCCCCGAAAAACGCCGTTGAAAATGAAAAAAATTCAAAAAAGGTGCCGCCGGGGGACGAGGATTTGAATTCCCGCGCAGTGAGAAACCTAGGCCACGGCGCCTGAAAGCATTATTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTTCCCTTCCACTTTTA</pcr_primer_p1>
		<pcr_primer_p2>ATTTGAAAGAGGGAAGAACTTT</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTTCCCTTCCACTTTTAAATGTGAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCATTCAGACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGGTATAAATTGAATAATTCATGTAGAACCCGGAAAATAAGTCCAATGAAACGGCAAAAACATTTATTTCTCAAAAGTTGAATTTTCAAAGTTCTTCCCTCTTTCAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTTCCCTTCCACTTTTAAATGTGAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCATTCAGACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGGTAYAAATTGAATAATTCATGTAGAACCCGGAAAATAAGTCCAATGAAACGGCAAAAACATTTATTTCTCAAAAGTTGAATTTTCAAAGTTCTTCCCTCTTTCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3522</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>133528</contig_pos>
        <strand>+</strand>
        <context>AGTTCTTTTT[G/T]AATTTTTTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCTCCTGCACTTATTCTTTTGCTTTCTGCATGTAGAACCTAGTTCTTTTT</left_flank>
        <right_flank>AATTTTTTAGATTCTAACAGATTTATTTTCAGAACTCTCTGGGCCGCCCG</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGACTTGCTTTTTTTCTATTTTCTCTTAAAATTTTCCATTTCTGTTTGAAAGCATTTGAAAGAGCCTTTGAAAAAGCTCAATTTTATGAATAATTCTAACCGTCCGATGTTTAATTTCTCTATTATATTTTTTCCTTCCGTTGCCTTCTCCCTAGTGTTCAATCCAGTGTAAACCCCTCCAGAATCCATCCCCTCCGAAAAGCGAGAGAAGTACTCTCTGTGAAGAGACGCAGTCGGTTAGACGACGCTGTTTGCGTATTTCCCGTGCCCGTCGAGGCGCCCTTTTCCAGCTTTTTTCCCCTTCGATTCTCGCTGAAAATCCCGAAAATGAAGCGCCTGTTCGACTTCTCGATAATCAAGTAATTATATAGTTATGTATATTGATTTATTTACATGTGTTTGTCACCCAAAAAAACAATTAATTCTCTGAAAAATAAATGTTGTGTTGCCTCCTGCACTTATTCTTTTGCTTTCTGCATGTAGAACCTAGTTCTTTTTGAATTTTTTAGATTCTAACAGATTTATTTTCAGAACTCTCTGGGCCGCCCGTCTCCAGACACTTTTCCAATCGATTTTCGGGAAAAATACTCCAGCGAAATCTATTCAGAATCCAGTGGTACAGCCGGTACTAAAAGTTCCCAAAACTACAATTCCATCGAGCAGTAGTAAAAGAGAGATGCATTCGTCGACTGTTGTCAAGGCGGTGAGTTTTTCGAATTTTTAAAAAATTAAGAATTTGAAGCTTCAGGCCTTCCGCAAGCCAATGATCAAATTCATCGGAGCCCGTCTCCCTCGCCCACTGTACGACTCCAAATCCCTTCCACCTCTTCAAATCTCTGGAAATTTCCCATCTGGTGTCACTAAAACCGCCGCCGCTCCAACAGCTTCATCCATCGGACCAGTCGGAAAAATTCCACGTGGACAGGGAATCGAATGGAATCAGTTGCCAAAAAGCTTCCAGAGACAAGGAATGTCAGAAGAAGAGTGTGAAGCTGTTAA</canonical>
            <polymorphic>CGGACTTGCTTTTTTTCTATTTTCTCTTAAAATTTTCCATTTCTGTTTGAAAGCATTTGAAAGAGCCTTTGAAAAAGCTCAATTTTATGAATAATTCTAACCGTCCGATGTTTAATTTCTCTATTATATTTTTTCCTTCCGTTGCCTTCTCCCTAGTGTTCAATCCAGTGTAAACCCCTCCAGAATCCATCCCCTCCGAAAAGCGAGAGAAGTACTCTCTGTGAAGAGACGCAGTCGGTTAGACGACGCTGTTTGCGTATTTCCCGTGCCCGTCGAGGCGCCCTTTTCCAGCTTTTTTCCCCTTCGATTCTCGCTGAAAATCCCGAAAATGAAGCGCCTGTTCGACTTCTCGATAATCAAGTAATTATATAGTTATGTATATTGATTTATTTACATGTGTTTGTCACCCAAAAAAACAATTAATTCTCTGAAAAATAAATGTTGTGTTGCCTCCTGCACTTATTCTTTTGCTTTCTGCATGTAGAACCTAGTTCTTTTTKAATTTTTTAGATTCTAACAGATTTATTTTCAGAACTCTCTGGGCCGCCCGTCTCCAGACACTTTTCCAATCGATTTTCGGGAAAAATACTCCAGCGAAATCTATTCAGAATCCAGTGGTACAGCCGGTACTAAAAGTTCCCAAAACTACAATTCCATCGAGCAGTAGTAAAAGAGAGATGCATTCGTCGACTGTTGTCAAGGCGGTGAGTTTTTCGAATTTTTAAAAAATTAAGAATTTGAAGCTTCAGGCCTTCCGCAAGCCAATGATCAAATTCATCGGAGCCCGTCTCCCTCGCCCACTGTACGACTCCAAATCCCTTCCACCTCTTCAAATCTCTGGAAATTTCCCATCTGGTGTCACTAAAACCGCCGCCGCTCCAACAGCTTCATCCATCGGACCAGTCGGAAAAATTCCACGTGGACAGGGAATCGAATGGAATCAGTTGCCAAAAAGCTTCCAGAGACAAGGAATGTCAGAAGAAGAGTGTGAAGCTGTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>470 216 90 71 68 37 30 18</canonical_bands>
                <polymorphic_bands>686 90 71 68 37 30 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATTTATTTACATGTGTTTGTCA</pcr_primer_p1>
		<pcr_primer_p2>CTGTACCACTGGATTCTGAATAG</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TGATTTATTTACATGTGTTTGTCACCCAAAAAAACAATTAATTCTCTGAAAAATAAATGTTGTGTTGCCTCCTGCACTTATTCTTTTGCTTTCTGCATGTAGAACCTAGTTCTTTTTGAATTTTTTAGATTCTAACAGATTTATTTTCAGAACTCTCTGGGCCGCCCGTCTCCAGACACTTTTCCAATCGATTTTCGGGAAAAATACTCCAGCGAAATCTATTCAGAATCCAGTGGTACAG</canonical_amplicon>
		<polymorphic_amplicon>TGATTTATTTACATGTGTTTGTCACCCAAAAAAACAATTAATTCTCTGAAAAATAAATGTTGTGTTGCCTCCTGCACTTATTCTTTTGCTTTCTGCATGTAGAACCTAGTTCTTTTTKAATTTTTTAGATTCTAACAGATTTATTTTCAGAACTCTCTGGGCCGCCCGTCTCCAGACACTTTTCCAATCGATTTTCGGGAAAAATACTCCAGCGAAATCTATTCAGAATCCAGTGGTACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3523</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>133400</contig_pos>
        <strand>+</strand>
        <context>TAATTATATA[A/G]TTATGTATAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCGAAAATGAAGCGCCTGTTCGACTTCTCGATAATCAAGTAATTATATA</left_flank>
        <right_flank>TTATGTATATTGATTTATTTACATGTGTTTGTCACCCAAAAAAACAATTA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGCTTGCTATGTTTTGTGTGTGCATTGGCTCCGCCCACTGGAAATTTGCATATTAATGAGACTCTGACAAAGATTAATGAGGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAGAAGGCGTTCGGACTTGCTTTTTTTCTATTTTCTCTTAAAATTTTCCATTTCTGTTTGAAAGCATTTGAAAGAGCCTTTGAAAAAGCTCAATTTTATGAATAATTCTAACCGTCCGATGTTTAATTTCTCTATTATATTTTTTCCTTCCGTTGCCTTCTCCCTAGTGTTCAATCCAGTGTAAACCCCTCCAGAATCCATCCCCTCCGAAAAGCGAGAGAAGTACTCTCTGTGAAGAGACGCAGTCGGTTAGACGACGCTGTTTGCGTATTTCCCGTGCCCGTCGAGGCGCCCTTTTCCAGCTTTTTTCCCCTTCGATTCTCGCTGAAAATCCCGAAAATGAAGCGCCTGTTCGACTTCTCGATAATCAAGTAATTATATAGTTATGTATATTGATTTATTTACATGTGTTTGTCACCCAAAAAAACAATTAATTCTCTGAAAAATAAATGTTGTGTTGCCTCCTGCACTTATTCTTTTGCTTTCTGCATGTAGAACCTAGTTCTTTTTGAATTTTTTAGATTCTAACAGATTTATTTTCAGAACTCTCTGGGCCGCCCGTCTCCAGACACTTTTCCAATCGATTTTCGGGAAAAATACTCCAGCGAAATCTATTCAGAATCCAGTGGTACAGCCGGTACTAAAAGTTCCCAAAACTACAATTCCATCGAGCAGTAGTAAAAGAGAGATGCATTCGTCGACTGTTGTCAAGGCGGTGAGTTTTTCGAATTTTTAAAAAATTAAGAATTTGAAGCTTCAGGCCTTCCGCAAGCCAATGATCAAATTCATCGGAGCCCGTCTCCCTCGCCCACTGTACGACTCCAAATCCCTTCCACCTCTTCAAATCTCTGGAAATTTCCCATCTGGTGTCACTAAAACCGCC</canonical>
            <polymorphic>CCGCTTGCTATGTTTTGTGTGTGCATTGGCTCCGCCCACTGGAAATTTGCATATTAATGAGACTCTGACAAAGATTAATGAGGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAGAAGGCGTTCGGACTTGCTTTTTTTCTATTTTCTCTTAAAATTTTCCATTTCTGTTTGAAAGCATTTGAAAGAGCCTTTGAAAAAGCTCAATTTTATGAATAATTCTAACCGTCCGATGTTTAATTTCTCTATTATATTTTTTCCTTCCGTTGCCTTCTCCCTAGTGTTCAATCCAGTGTAAACCCCTCCAGAATCCATCCCCTCCGAAAAGCGAGAGAAGTACTCTCTGTGAAGAGACGCAGTCGGTTAGACGACGCTGTTTGCGTATTTCCCGTGCCCGTCGAGGCGCCCTTTTCCAGCTTTTTTCCCCTTCGATTCTCGCTGAAAATCCCGAAAATGAAGCGCCTGTTCGACTTCTCGATAATCAAGTAATTATATARTTATGTATATTGATTTATTTACATGTGTTTGTCACCCAAAAAAACAATTAATTCTCTGAAAAATAAATGTTGTGTTGCCTCCTGCACTTATTCTTTTGCTTTCTGCATGTAGAACCTAGTTCTTTTTGAATTTTTTAGATTCTAACAGATTTATTTTCAGAACTCTCTGGGCCGCCCGTCTCCAGACACTTTTCCAATCGATTTTCGGGAAAAATACTCCAGCGAAATCTATTCAGAATCCAGTGGTACAGCCGGTACTAAAAGTTCCCAAAACTACAATTCCATCGAGCAGTAGTAAAAGAGAGATGCATTCGTCGACTGTTGTCAAGGCGGTGAGTTTTTCGAATTTTTAAAAAATTAAGAATTTGAAGCTTCAGGCCTTCCGCAAGCCAATGATCAAATTCATCGGAGCCCGTCTCCCTCGCCCACTGTACGACTCCAAATCCCTTCCACCTCTTCAAATCTCTGGAAATTTCCCATCTGGTGTCACTAAAACCGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCTGTGAAGAGACGCAGT</pcr_primer_p1>
		<pcr_primer_p2>CAACACAACATTTATTTTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>TCTCTGTGAAGAGACGCAGTCGGTTAGACGACGCTGTTTGCGTATTTCCCGTGCCCGTCGAGGCGCCCTTTTCCAGCTTTTTTCCCCTTCGATTCTCGCTGAAAATCCCGAAAATGAAGCGCCTGTTCGACTTCTCGATAATCAAGTAATTATATAGTTATGTATATTGATTTATTTACATGTGTTTGTCACCCAAAAAAACAATTAATTCTCTGAAAAATAAATGTTGTGTTG</canonical_amplicon>
		<polymorphic_amplicon>TCTCTGTGAAGAGACGCAGTCGGTTAGACGACGCTGTTTGCGTATTTCCCGTGCCCGTCGAGGCGCCCTTTTCCAGCTTTTTTCCCCTTCGATTCTCGCTGAAAATCCCGAAAATGAAGCGCCTGTTCGACTTCTCGATAATCAAGTAATTATATARTTATGTATATTGATTTATTTACATGTGTTTGTCACCCAAAAAAACAATTAATTCTCTGAAAAATAAATGTTGTGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3524</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>133132</contig_pos>
        <strand>+</strand>
        <context>ATTCTAACCG[C/T]CCGATGTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATTTGAAAGAGCCTTTGAAAAAGCTCAATTTTATGAATAATTCTAACCG</left_flank>
        <right_flank>CCGATGTTTAATTTCTCTATTATATTTTTTCCTTCCGTTGCCTTCTCCCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATTGAAGCTGCACTTTTGCTCTTCTTTCGTTTTAAAGATCTTGATCTTGATCTTTAGAAACTTCTGTAAGTTCAGACATATCAATTTACTTTTTCCGCTTCAACGGAAACCCCGAAGAAGCTTTTCCAAAATTTATGTTATCGACACATTCTCGATAGAGAAAGTTCGAAACGACAGCTAACCTTGGTTATCTGGGATAAATCCAACGAACACCGCGTTCACTCGCCTCTTATGTTTCGCCATGTACCGACACTTCCCGGGTTCCGCCGCTTGCTATGTTTTGTGTGTGCATTGGCTCCGCCCACTGGAAATTTGCATATTAATGAGACTCTGACAAAGATTAATGAGGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAGAAGGCGTTCGGACTTGCTTTTTTTCTATTTTCTCTTAAAATTTTCCATTTCTGTTTGAAAGCATTTGAAAGAGCCTTTGAAAAAGCTCAATTTTATGAATAATTCTAACCGTCCGATGTTTAATTTCTCTATTATATTTTTTCCTTCCGTTGCCTTCTCCCTAGTGTTCAATCCAGTGTAAACCCCTCCAGAATCCATCCCCTCCGAAAAGCGAGAGAAGTACTCTCTGTGAAGAGACGCAGTCGGTTAGACGACGCTGTTTGCGTATTTCCCGTGCCCGTCGAGGCGCCCTTTTCCAGCTTTTTTCCCCTTCGATTCTCGCTGAAAATCCCGAAAATGAAGCGCCTGTTCGACTTCTCGATAATCAAGTAATTATATAGTTATGTATATTGATTTATTTACATGTGTTTGTCACCCAAAAAAACAATTAATTCTCTGAAAAATAAATGTTGTGTTGCCTCCTGCACTTATTCTTTTGCTTTCTGCATGTAGAACCTAGTTCTTTTTGAATTTTTTAGATTCTAACAGATTTATTTTCAGAACTCTCTGGGCCGCCCGTCTCCAGACACTTTTCCAATCGATTTTCGGGAAAAATACTCCAGCGAAATCTAT</canonical>
            <polymorphic>TCATTGAAGCTGCACTTTTGCTCTTCTTTCGTTTTAAAGATCTTGATCTTGATCTTTAGAAACTTCTGTAAGTTCAGACATATCAATTTACTTTTTCCGCTTCAACGGAAACCCCGAAGAAGCTTTTCCAAAATTTATGTTATCGACACATTCTCGATAGAGAAAGTTCGAAACGACAGCTAACCTTGGTTATCTGGGATAAATCCAACGAACACCGCGTTCACTCGCCTCTTATGTTTCGCCATGTACCGACACTTCCCGGGTTCCGCCGCTTGCTATGTTTTGTGTGTGCATTGGCTCCGCCCACTGGAAATTTGCATATTAATGAGACTCTGACAAAGATTAATGAGGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAGAAGGCGTTCGGACTTGCTTTTTTTCTATTTTCTCTTAAAATTTTCCATTTCTGTTTGAAAGCATTTGAAAGAGCCTTTGAAAAAGCTCAATTTTATGAATAATTCTAACCGYCCGATGTTTAATTTCTCTATTATATTTTTTCCTTCCGTTGCCTTCTCCCTAGTGTTCAATCCAGTGTAAACCCCTCCAGAATCCATCCCCTCCGAAAAGCGAGAGAAGTACTCTCTGTGAAGAGACGCAGTCGGTTAGACGACGCTGTTTGCGTATTTCCCGTGCCCGTCGAGGCGCCCTTTTCCAGCTTTTTTCCCCTTCGATTCTCGCTGAAAATCCCGAAAATGAAGCGCCTGTTCGACTTCTCGATAATCAAGTAATTATATAGTTATGTATATTGATTTATTTACATGTGTTTGTCACCCAAAAAAACAATTAATTCTCTGAAAAATAAATGTTGTGTTGCCTCCTGCACTTATTCTTTTGCTTTCTGCATGTAGAACCTAGTTCTTTTTGAATTTTTTAGATTCTAACAGATTTATTTTCAGAACTCTCTGGGCCGCCCGTCTCCAGACACTTTTCCAATCGATTTTCGGGAAAAATACTCCAGCGAAATCTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>258 232 104 102 91 76 73 64</canonical_bands>
                <polymorphic_bands>258 232 195 102 76 73 64</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCATATTAATGAGACTCTGACA</pcr_primer_p1>
		<pcr_primer_p2>GGATTGAACACTAGGGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGCATATTAATGAGACTCTGACAAAGATTAATGAGGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAGAAGGCGTTCGGACTTGCTTTTTTTCTATTTTCTCTTAAAATTTTCCATTTCTGTTTGAAAGCATTTGAAAGAGCCTTTGAAAAAGCTCAATTTTATGAATAATTCTAACCGTCCGATGTTTAATTTCTCTATTATATTTTTTCCTTCCGTTGCCTTCTCCCTAGTGTTCAATCC</canonical_amplicon>
		<polymorphic_amplicon>TGCATATTAATGAGACTCTGACAAAGATTAATGAGGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAGAAGGCGTTCGGACTTGCTTTTTTTCTATTTTCTCTTAAAATTTTCCATTTCTGTTTGAAAGCATTTGAAAGAGCCTTTGAAAAAGCTCAATTTTATGAATAATTCTAACCGYCCGATGTTTAATTTCTCTATTATATTTTTTCCTTCCGTTGCCTTCTCCCTAGTGTTCAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3525</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>133092</contig_pos>
        <strand>+</strand>
        <context>CATTTGAAAG[A/G]GCCTTTGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCTATTTTCTCTTAAAATTTTCCATTTCTGTTTGAAAGCATTTGAAAG</left_flank>
        <right_flank>GCCTTTGAAAAAGCTCAATTTTATGAATAATTCTAACCGTCCGATGTTTA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGGAAGAATAAGTAATCCACTCAAGCATGATAATCATGTTCATTGAAGCTGCACTTTTGCTCTTCTTTCGTTTTAAAGATCTTGATCTTGATCTTTAGAAACTTCTGTAAGTTCAGACATATCAATTTACTTTTTCCGCTTCAACGGAAACCCCGAAGAAGCTTTTCCAAAATTTATGTTATCGACACATTCTCGATAGAGAAAGTTCGAAACGACAGCTAACCTTGGTTATCTGGGATAAATCCAACGAACACCGCGTTCACTCGCCTCTTATGTTTCGCCATGTACCGACACTTCCCGGGTTCCGCCGCTTGCTATGTTTTGTGTGTGCATTGGCTCCGCCCACTGGAAATTTGCATATTAATGAGACTCTGACAAAGATTAATGAGGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAGAAGGCGTTCGGACTTGCTTTTTTTCTATTTTCTCTTAAAATTTTCCATTTCTGTTTGAAAGCATTTGAAAGAGCCTTTGAAAAAGCTCAATTTTATGAATAATTCTAACCGTCCGATGTTTAATTTCTCTATTATATTTTTTCCTTCCGTTGCCTTCTCCCTAGTGTTCAATCCAGTGTAAACCCCTCCAGAATCCATCCCCTCCGAAAAGCGAGAGAAGTACTCTCTGTGAAGAGACGCAGTCGGTTAGACGACGCTGTTTGCGTATTTCCCGTGCCCGTCGAGGCGCCCTTTTCCAGCTTTTTTCCCCTTCGATTCTCGCTGAAAATCCCGAAAATGAAGCGCCTGTTCGACTTCTCGATAATCAAGTAATTATATAGTTATGTATATTGATTTATTTACATGTGTTTGTCACCCAAAAAAACAATTAATTCTCTGAAAAATAAATGTTGTGTTGCCTCCTGCACTTATTCTTTTGCTTTCTGCATGTAGAACCTAGTTCTTTTTGAATTTTTTAGATTCTAACAGATTTATTTTCAGAACTCTCTGGGCCGCCCGTCTCCAGACACTTT</canonical>
            <polymorphic>AAGGAAGAATAAGTAATCCACTCAAGCATGATAATCATGTTCATTGAAGCTGCACTTTTGCTCTTCTTTCGTTTTAAAGATCTTGATCTTGATCTTTAGAAACTTCTGTAAGTTCAGACATATCAATTTACTTTTTCCGCTTCAACGGAAACCCCGAAGAAGCTTTTCCAAAATTTATGTTATCGACACATTCTCGATAGAGAAAGTTCGAAACGACAGCTAACCTTGGTTATCTGGGATAAATCCAACGAACACCGCGTTCACTCGCCTCTTATGTTTCGCCATGTACCGACACTTCCCGGGTTCCGCCGCTTGCTATGTTTTGTGTGTGCATTGGCTCCGCCCACTGGAAATTTGCATATTAATGAGACTCTGACAAAGATTAATGAGGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAGAAGGCGTTCGGACTTGCTTTTTTTCTATTTTCTCTTAAAATTTTCCATTTCTGTTTGAAAGCATTTGAAAGRGCCTTTGAAAAAGCTCAATTTTATGAATAATTCTAACCGTCCGATGTTTAATTTCTCTATTATATTTTTTCCTTCCGTTGCCTTCTCCCTAGTGTTCAATCCAGTGTAAACCCCTCCAGAATCCATCCCCTCCGAAAAGCGAGAGAAGTACTCTCTGTGAAGAGACGCAGTCGGTTAGACGACGCTGTTTGCGTATTTCCCGTGCCCGTCGAGGCGCCCTTTTCCAGCTTTTTTCCCCTTCGATTCTCGCTGAAAATCCCGAAAATGAAGCGCCTGTTCGACTTCTCGATAATCAAGTAATTATATAGTTATGTATATTGATTTATTTACATGTGTTTGTCACCCAAAAAAACAATTAATTCTCTGAAAAATAAATGTTGTGTTGCCTCCTGCACTTATTCTTTTGCTTTCTGCATGTAGAACCTAGTTCTTTTTGAATTTTTTAGATTCTAACAGATTTATTTTCAGAACTCTCTGGGCCGCCCGTCTCCAGACACTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>252 214 118 113 85 79 57 49 21 12</canonical_bands>
                <polymorphic_bands>252 214 118 113 91 85 57 49 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCATATTAATGAGACTCTGACA</pcr_primer_p1>
		<pcr_primer_p2>GGATTGAACACTAGGGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGCATATTAATGAGACTCTGACAAAGATTAATGAGGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAGAAGGCGTTCGGACTTGCTTTTTTTCTATTTTCTCTTAAAATTTTCCATTTCTGTTTGAAAGCATTTGAAAGAGCCTTTGAAAAAGCTCAATTTTATGAATAATTCTAACCGTCCGATGTTTAATTTCTCTATTATATTTTTTCCTTCCGTTGCCTTCTCCCTAGTGTTCAATCC</canonical_amplicon>
		<polymorphic_amplicon>TGCATATTAATGAGACTCTGACAAAGATTAATGAGGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAGAAGGCGTTCGGACTTGCTTTTTTTCTATTTTCTCTTAAAATTTTCCATTTCTGTTTGAAAGCATTTGAAAGRGCCTTTGAAAAAGCTCAATTTTATGAATAATTCTAACCGTCCGATGTTTAATTTCTCTATTATATTTTTTCCTTCCGTTGCCTTCTCCCTAGTGTTCAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3526</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>133057</contig_pos>
        <strand>+</strand>
        <context>ATTTTCTCTT[A/T]AAATTTTCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAGGAGGCCTTAGAAGGCGTTCGGACTTGCTTTTTTTCTATTTTCTCTT</left_flank>
        <right_flank>AAATTTTCCATTTCTGTTTGAAAGCATTTGAAAGAGCCTTTGAAAAAGCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTTATAGAAAAAGGGATTAGGTGGCGACAAAAAAGGAAGAATAAGTAATCCACTCAAGCATGATAATCATGTTCATTGAAGCTGCACTTTTGCTCTTCTTTCGTTTTAAAGATCTTGATCTTGATCTTTAGAAACTTCTGTAAGTTCAGACATATCAATTTACTTTTTCCGCTTCAACGGAAACCCCGAAGAAGCTTTTCCAAAATTTATGTTATCGACACATTCTCGATAGAGAAAGTTCGAAACGACAGCTAACCTTGGTTATCTGGGATAAATCCAACGAACACCGCGTTCACTCGCCTCTTATGTTTCGCCATGTACCGACACTTCCCGGGTTCCGCCGCTTGCTATGTTTTGTGTGTGCATTGGCTCCGCCCACTGGAAATTTGCATATTAATGAGACTCTGACAAAGATTAATGAGGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAGAAGGCGTTCGGACTTGCTTTTTTTCTATTTTCTCTTAAAATTTTCCATTTCTGTTTGAAAGCATTTGAAAGAGCCTTTGAAAAAGCTCAATTTTATGAATAATTCTAACCGTCCGATGTTTAATTTCTCTATTATATTTTTTCCTTCCGTTGCCTTCTCCCTAGTGTTCAATCCAGTGTAAACCCCTCCAGAATCCATCCCCTCCGAAAAGCGAGAGAAGTACTCTCTGTGAAGAGACGCAGTCGGTTAGACGACGCTGTTTGCGTATTTCCCGTGCCCGTCGAGGCGCCCTTTTCCAGCTTTTTTCCCCTTCGATTCTCGCTGAAAATCCCGAAAATGAAGCGCCTGTTCGACTTCTCGATAATCAAGTAATTATATAGTTATGTATATTGATTTATTTACATGTGTTTGTCACCCAAAAAAACAATTAATTCTCTGAAAAATAAATGTTGTGTTGCCTCCTGCACTTATTCTTTTGCTTTCTGCATGTAGAACCTAGTTCTTTTTGAATTTTTTAGATTCTAACAGATTTATTTT</canonical>
            <polymorphic>TATTTTATAGAAAAAGGGATTAGGTGGCGACAAAAAAGGAAGAATAAGTAATCCACTCAAGCATGATAATCATGTTCATTGAAGCTGCACTTTTGCTCTTCTTTCGTTTTAAAGATCTTGATCTTGATCTTTAGAAACTTCTGTAAGTTCAGACATATCAATTTACTTTTTCCGCTTCAACGGAAACCCCGAAGAAGCTTTTCCAAAATTTATGTTATCGACACATTCTCGATAGAGAAAGTTCGAAACGACAGCTAACCTTGGTTATCTGGGATAAATCCAACGAACACCGCGTTCACTCGCCTCTTATGTTTCGCCATGTACCGACACTTCCCGGGTTCCGCCGCTTGCTATGTTTTGTGTGTGCATTGGCTCCGCCCACTGGAAATTTGCATATTAATGAGACTCTGACAAAGATTAATGAGGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAGAAGGCGTTCGGACTTGCTTTTTTTCTATTTTCTCTTWAAATTTTCCATTTCTGTTTGAAAGCATTTGAAAGAGCCTTTGAAAAAGCTCAATTTTATGAATAATTCTAACCGTCCGATGTTTAATTTCTCTATTATATTTTTTCCTTCCGTTGCCTTCTCCCTAGTGTTCAATCCAGTGTAAACCCCTCCAGAATCCATCCCCTCCGAAAAGCGAGAGAAGTACTCTCTGTGAAGAGACGCAGTCGGTTAGACGACGCTGTTTGCGTATTTCCCGTGCCCGTCGAGGCGCCCTTTTCCAGCTTTTTTCCCCTTCGATTCTCGCTGAAAATCCCGAAAATGAAGCGCCTGTTCGACTTCTCGATAATCAAGTAATTATATAGTTATGTATATTGATTTATTTACATGTGTTTGTCACCCAAAAAAACAATTAATTCTCTGAAAAATAAATGTTGTGTTGCCTCCTGCACTTATTCTTTTGCTTTCTGCATGTAGAACCTAGTTCTTTTTGAATTTTTTAGATTCTAACAGATTTATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>308 288 109 109 85 80 21</canonical_bands>
                <polymorphic_bands>308 288 165 109 109 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCATATTAATGAGACTCTGACA</pcr_primer_p1>
		<pcr_primer_p2>GGATTGAACACTAGGGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGCATATTAATGAGACTCTGACAAAGATTAATGAGGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAGAAGGCGTTCGGACTTGCTTTTTTTCTATTTTCTCTTAAAATTTTCCATTTCTGTTTGAAAGCATTTGAAAGAGCCTTTGAAAAAGCTCAATTTTATGAATAATTCTAACCGTCCGATGTTTAATTTCTCTATTATATTTTTTCCTTCCGTTGCCTTCTCCCTAGTGTTCAATCC</canonical_amplicon>
		<polymorphic_amplicon>TGCATATTAATGAGACTCTGACAAAGATTAATGAGGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAGAAGGCGTTCGGACTTGCTTTTTTTCTATTTTCTCTTWAAATTTTCCATTTCTGTTTGAAAGCATTTGAAAGAGCCTTTGAAAAAGCTCAATTTTATGAATAATTCTAACCGTCCGATGTTTAATTTCTCTATTATATTTTTTCCTTCCGTTGCCTTCTCCCTAGTGTTCAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3527</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>133021</contig_pos>
        <strand>+</strand>
        <context>GAGGCCTTAG[A/C]AGGCGTTCGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGATTAATGAGGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAG</left_flank>
        <right_flank>AGGCGTTCGGACTTGCTTTTTTTCTATTTTCTCTTAAAATTTTCCATTTC</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTCGTGGGAAAAACTATGGGTGGCCTTATATTGGTATTTTATAGAAAAAGGGATTAGGTGGCGACAAAAAAGGAAGAATAAGTAATCCACTCAAGCATGATAATCATGTTCATTGAAGCTGCACTTTTGCTCTTCTTTCGTTTTAAAGATCTTGATCTTGATCTTTAGAAACTTCTGTAAGTTCAGACATATCAATTTACTTTTTCCGCTTCAACGGAAACCCCGAAGAAGCTTTTCCAAAATTTATGTTATCGACACATTCTCGATAGAGAAAGTTCGAAACGACAGCTAACCTTGGTTATCTGGGATAAATCCAACGAACACCGCGTTCACTCGCCTCTTATGTTTCGCCATGTACCGACACTTCCCGGGTTCCGCCGCTTGCTATGTTTTGTGTGTGCATTGGCTCCGCCCACTGGAAATTTGCATATTAATGAGACTCTGACAAAGATTAATGAGGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAGAAGGCGTTCGGACTTGCTTTTTTTCTATTTTCTCTTAAAATTTTCCATTTCTGTTTGAAAGCATTTGAAAGAGCCTTTGAAAAAGCTCAATTTTATGAATAATTCTAACCGTCCGATGTTTAATTTCTCTATTATATTTTTTCCTTCCGTTGCCTTCTCCCTAGTGTTCAATCCAGTGTAAACCCCTCCAGAATCCATCCCCTCCGAAAAGCGAGAGAAGTACTCTCTGTGAAGAGACGCAGTCGGTTAGACGACGCTGTTTGCGTATTTCCCGTGCCCGTCGAGGCGCCCTTTTCCAGCTTTTTTCCCCTTCGATTCTCGCTGAAAATCCCGAAAATGAAGCGCCTGTTCGACTTCTCGATAATCAAGTAATTATATAGTTATGTATATTGATTTATTTACATGTGTTTGTCACCCAAAAAAACAATTAATTCTCTGAAAAATAAATGTTGTGTTGCCTCCTGCACTTATTCTTTTGCTTTCTGCATGTAGAACCTAGTT</canonical>
            <polymorphic>TGTTCGTGGGAAAAACTATGGGTGGCCTTATATTGGTATTTTATAGAAAAAGGGATTAGGTGGCGACAAAAAAGGAAGAATAAGTAATCCACTCAAGCATGATAATCATGTTCATTGAAGCTGCACTTTTGCTCTTCTTTCGTTTTAAAGATCTTGATCTTGATCTTTAGAAACTTCTGTAAGTTCAGACATATCAATTTACTTTTTCCGCTTCAACGGAAACCCCGAAGAAGCTTTTCCAAAATTTATGTTATCGACACATTCTCGATAGAGAAAGTTCGAAACGACAGCTAACCTTGGTTATCTGGGATAAATCCAACGAACACCGCGTTCACTCGCCTCTTATGTTTCGCCATGTACCGACACTTCCCGGGTTCCGCCGCTTGCTATGTTTTGTGTGTGCATTGGCTCCGCCCACTGGAAATTTGCATATTAATGAGACTCTGACAAAGATTAATGAGGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAGMAGGCGTTCGGACTTGCTTTTTTTCTATTTTCTCTTAAAATTTTCCATTTCTGTTTGAAAGCATTTGAAAGAGCCTTTGAAAAAGCTCAATTTTATGAATAATTCTAACCGTCCGATGTTTAATTTCTCTATTATATTTTTTCCTTCCGTTGCCTTCTCCCTAGTGTTCAATCCAGTGTAAACCCCTCCAGAATCCATCCCCTCCGAAAAGCGAGAGAAGTACTCTCTGTGAAGAGACGCAGTCGGTTAGACGACGCTGTTTGCGTATTTCCCGTGCCCGTCGAGGCGCCCTTTTCCAGCTTTTTTCCCCTTCGATTCTCGCTGAAAATCCCGAAAATGAAGCGCCTGTTCGACTTCTCGATAATCAAGTAATTATATAGTTATGTATATTGATTTATTTACATGTGTTTGTCACCCAAAAAAACAATTAATTCTCTGAAAAATAAATGTTGTGTTGCCTCCTGCACTTATTCTTTTGCTTTCTGCATGTAGAACCTAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>497 269 234</canonical_bands>
                <polymorphic_bands>766 234</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCATATTAATGAGACTCTGACA</pcr_primer_p1>
		<pcr_primer_p2>GGATTGAACACTAGGGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGCATATTAATGAGACTCTGACAAAGATTAATGAGGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAGAAGGCGTTCGGACTTGCTTTTTTTCTATTTTCTCTTAAAATTTTCCATTTCTGTTTGAAAGCATTTGAAAGAGCCTTTGAAAAAGCTCAATTTTATGAATAATTCTAACCGTCCGATGTTTAATTTCTCTATTATATTTTTTCCTTCCGTTGCCTTCTCCCTAGTGTTCAATCC</canonical_amplicon>
		<polymorphic_amplicon>TGCATATTAATGAGACTCTGACAAAGATTAATGAGGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAGMAGGCGTTCGGACTTGCTTTTTTTCTATTTTCTCTTAAAATTTTCCATTTCTGTTTGAAAGCATTTGAAAGAGCCTTTGAAAAAGCTCAATTTTATGAATAATTCTAACCGTCCGATGTTTAATTTCTCTATTATATTTTTTCCTTCCGTTGCCTTCTCCCTAGTGTTCAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3528</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>132981</contig_pos>
        <strand></strand>
        <context>AAGAKTAATG[A/G]GGAGAAAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCGCCCACTGGAAATTTGCATATTAATGAGACTCTGACAAAGATTAATG</left_flank>
        <right_flank>GGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAGAAGGCGTTCGG</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAATTCCAGAAGAAACAAGGATGTAGAAGGTGAGAGAAATGTTCGTGGGAAAAACTATGGGTGGCCTTATATTGGTATTTTATAGAAAAAGGGATTAGGTGGCGACAAAAAAGGAAGAATAAGTAATCCACTCAAGCATGATAATCATGTTCATTGAAGCTGCACTTTTGCTCTTCTTTCGTTTTAAAGATCTTGATCTTGATCTTTAGAAACTTCTGTAAGTTCAGACATATCAATTTACTTTTTCCGCTTCAACGGAAACCCCGAAGAAGCTTTTCCAAAATTTATGTTATCGACACATTCTCGATAGAGAAAGTTCGAAACGACAGCTAACCTTGGTTATCTGGGATAAATCCAACGAACACCGCGTTCACTCGCCTCTTATGTTTCGCCATGTACCGACACTTCCCGGGTTCCGCCGCTTGCTATGTTTTGTGTGTGCATTGGCTCCGCCCACTGGAAATTTGCATATTAATGAGACTCTGACAAAGATTAATGAGGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAGAAGGCGTTCGGACTTGCTTTTTTTCTATTTTCTCTTAAAATTTTCCATTTCTGTTTGAAAGCATTTGAAAGAGCCTTTGAAAAAGCTCAATTTTATGAATAATTCTAACCGTCCGATGTTTAATTTCTCTATTATATTTTTTCCTTCCGTTGCCTTCTCCCTAGTGTTCAATCCAGTGTAAACCCCTCCAGAATCCATCCCCTCCGAAAAGCGAGAGAAGTACTCTCTGTGAAGAGACGCAGTCGGTTAGACGACGCTGTTTGCGTATTTCCCGTGCCCGTCGAGGCGCCCTTTTCCAGCTTTTTTCCCCTTCGATTCTCGCTGAAAATCCCGAAAATGAAGCGCCTGTTCGACTTCTCGATAATCAAGTAATTATATAGTTATGTATATTGATTTATTTACATGTGTTTGTCACCCAAAAAAACAATTAATTCTCTGAAAAATAAATGTTGTGTTGCCTC</canonical>
            <polymorphic>TCAATTCCAGAAGAAACAAGGATGTAGAAGGTGAGAGAAATGTTCGTGGGAAAAACTATGGGTGGCCTTATATTGGTATTTTATAGAAAAAGGGATTAGGTGGCGACAAAAAAGGAAGAATAAGTAATCCACTCAAGCATGATAATCATGTTCATTGAAGCTGCACTTTTGCTCTTCTTTCGTTTTAAAGATCTTGATCTTGATCTTTAGAAACTTCTGTAAGTTCAGACATATCAATTTACTTTTTCCGCTTCAACGGAAACCCCGAAGAAGCTTTTCCAAAATTTATGTTATCGACACATTCTCGATAGAGAAAGTTCGAAACGACAGCTAACCTTGGTTATCTGGGATAAATCCAACGAACACCGCGTTCACTCGCCTCTTATGTTTCGCCATGTACCGACACTTCCCGGGTTCCGCCGCTTGCTATGTTTTGTGTGTGCATTGGCTCCGCCCACTGGAAATTTGCATATTAATGAGACTCTGACAAAGATTAATGRGGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAGAAGGCGTTCGGACTTGCTTTTTTTCTATTTTCTCTTAAAATTTTCCATTTCTGTTTGAAAGCATTTGAAAGAGCCTTTGAAAAAGCTCAATTTTATGAATAATTCTAACCGTCCGATGTTTAATTTCTCTATTATATTTTTTCCTTCCGTTGCCTTCTCCCTAGTGTTCAATCCAGTGTAAACCCCTCCAGAATCCATCCCCTCCGAAAAGCGAGAGAAGTACTCTCTGTGAAGAGACGCAGTCGGTTAGACGACGCTGTTTGCGTATTTCCCGTGCCCGTCGAGGCGCCCTTTTCCAGCTTTTTTCCCCTTCGATTCTCGCTGAAAATCCCGAAAATGAAGCGCCTGTTCGACTTCTCGATAATCAAGTAATTATATAGTTATGTATATTGATTTATTTACATGTGTTTGTCACCCAAAAAAACAATTAATTCTCTGAAAAATAAATGTTGTGTTGCCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTTGGTTATCTGGGATAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTTTCAAACAGAAATGGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>ACCTTGGTTATCTGGGATAAATCCAACGAACACCGCGTTCACTCGCCTCTTATGTTTCGCCATGTACCGACACTTCCCGGGTTCCGCCGCTTGCTATGTTTTGTGTGTGCATTGGCTCCGCCCACTGGAAATTTGCATATTAATGAGACTCTGACAAAGATTAATGAGGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAGAAGGCGTTCGGACTTGCTTTTTTTCTATTTTCTCTTAAAATTTTCCATTTCTGTTTGAAAG</canonical_amplicon>
		<polymorphic_amplicon>ACCTTGGTTATCTGGGATAAATCCAACGAACACCGCGTTCACTCGCCTCTTATGTTTCGCCATGTACCGACACTTCCCGGGTTCCGCCGCTTGCTATGTTTTGTGTGTGCATTGGCTCCGCCCACTGGAAATTTGCATATTAATGAGACTCTGACAAAGATTAATGRGGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAGAAGGCGTTCGGACTTGCTTTTTTTCTATTTTCTCTTAAAATTTTCCATTTCTGTTTGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3529</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>132975</contig_pos>
        <strand></strand>
        <context>CTGACAAAGA[T/G]TAATGRGGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATTGGCTCCGCCCACTGGAAATTTGCATATTAATGAGACTCTGACAAAGA</left_flank>
        <right_flank>TAATGAGGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAGAAGGC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGACGTCAATTCCAGAAGAAACAAGGATGTAGAAGGTGAGAGAAATGTTCGTGGGAAAAACTATGGGTGGCCTTATATTGGTATTTTATAGAAAAAGGGATTAGGTGGCGACAAAAAAGGAAGAATAAGTAATCCACTCAAGCATGATAATCATGTTCATTGAAGCTGCACTTTTGCTCTTCTTTCGTTTTAAAGATCTTGATCTTGATCTTTAGAAACTTCTGTAAGTTCAGACATATCAATTTACTTTTTCCGCTTCAACGGAAACCCCGAAGAAGCTTTTCCAAAATTTATGTTATCGACACATTCTCGATAGAGAAAGTTCGAAACGACAGCTAACCTTGGTTATCTGGGATAAATCCAACGAACACCGCGTTCACTCGCCTCTTATGTTTCGCCATGTACCGACACTTCCCGGGTTCCGCCGCTTGCTATGTTTTGTGTGTGCATTGGCTCCGCCCACTGGAAATTTGCATATTAATGAGACTCTGACAAAGATTAATGAGGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAGAAGGCGTTCGGACTTGCTTTTTTTCTATTTTCTCTTAAAATTTTCCATTTCTGTTTGAAAGCATTTGAAAGAGCCTTTGAAAAAGCTCAATTTTATGAATAATTCTAACCGTCCGATGTTTAATTTCTCTATTATATTTTTTCCTTCCGTTGCCTTCTCCCTAGTGTTCAATCCAGTGTAAACCCCTCCAGAATCCATCCCCTCCGAAAAGCGAGAGAAGTACTCTCTGTGAAGAGACGCAGTCGGTTAGACGACGCTGTTTGCGTATTTCCCGTGCCCGTCGAGGCGCCCTTTTCCAGCTTTTTTCCCCTTCGATTCTCGCTGAAAATCCCGAAAATGAAGCGCCTGTTCGACTTCTCGATAATCAAGTAATTATATAGTTATGTATATTGATTTATTTACATGTGTTTGTCACCCAAAAAAACAATTAATTCTCTGAAAAATAAATGTTGTGT</canonical>
            <polymorphic>TTGACGTCAATTCCAGAAGAAACAAGGATGTAGAAGGTGAGAGAAATGTTCGTGGGAAAAACTATGGGTGGCCTTATATTGGTATTTTATAGAAAAAGGGATTAGGTGGCGACAAAAAAGGAAGAATAAGTAATCCACTCAAGCATGATAATCATGTTCATTGAAGCTGCACTTTTGCTCTTCTTTCGTTTTAAAGATCTTGATCTTGATCTTTAGAAACTTCTGTAAGTTCAGACATATCAATTTACTTTTTCCGCTTCAACGGAAACCCCGAAGAAGCTTTTCCAAAATTTATGTTATCGACACATTCTCGATAGAGAAAGTTCGAAACGACAGCTAACCTTGGTTATCTGGGATAAATCCAACGAACACCGCGTTCACTCGCCTCTTATGTTTCGCCATGTACCGACACTTCCCGGGTTCCGCCGCTTGCTATGTTTTGTGTGTGCATTGGCTCCGCCCACTGGAAATTTGCATATTAATGAGACTCTGACAAAGAKTAATGAGGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAGAAGGCGTTCGGACTTGCTTTTTTTCTATTTTCTCTTAAAATTTTCCATTTCTGTTTGAAAGCATTTGAAAGAGCCTTTGAAAAAGCTCAATTTTATGAATAATTCTAACCGTCCGATGTTTAATTTCTCTATTATATTTTTTCCTTCCGTTGCCTTCTCCCTAGTGTTCAATCCAGTGTAAACCCCTCCAGAATCCATCCCCTCCGAAAAGCGAGAGAAGTACTCTCTGTGAAGAGACGCAGTCGGTTAGACGACGCTGTTTGCGTATTTCCCGTGCCCGTCGAGGCGCCCTTTTCCAGCTTTTTTCCCCTTCGATTCTCGCTGAAAATCCCGAAAATGAAGCGCCTGTTCGACTTCTCGATAATCAAGTAATTATATAGTTATGTATATTGATTTATTTACATGTGTTTGTCACCCAAAAAAACAATTAATTCTCTGAAAAATAAATGTTGTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>479 473 27 21</canonical_bands>
                <polymorphic_bands>494 479 27</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>308 288 191 85 80 27 21</canonical_bands>
                <polymorphic_bands>308 288 191 101 85 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCTTGGTTATCTGGGATAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTTTCAAACAGAAATGGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>ACCTTGGTTATCTGGGATAAATCCAACGAACACCGCGTTCACTCGCCTCTTATGTTTCGCCATGTACCGACACTTCCCGGGTTCCGCCGCTTGCTATGTTTTGTGTGTGCATTGGCTCCGCCCACTGGAAATTTGCATATTAATGAGACTCTGACAAAGATTAATGAGGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAGAAGGCGTTCGGACTTGCTTTTTTTCTATTTTCTCTTAAAATTTTCCATTTCTGTTTGAAAG</canonical_amplicon>
		<polymorphic_amplicon>ACCTTGGTTATCTGGGATAAATCCAACGAACACCGCGTTCACTCGCCTCTTATGTTTCGCCATGTACCGACACTTCCCGGGTTCCGCCGCTTGCTATGTTTTGTGTGTGCATTGGCTCCGCCCACTGGAAATTTGCATATTAATGAGACTCTGACAAAGAKTAATGAGGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAGAAGGCGTTCGGACTTGCTTTTTTTCTATTTTCTCTTAAAATTTTCCATTTCTGTTTGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3543</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>230361</contig_pos>
        <strand></strand>
        <context>ttaaatttaa[T/G]aatttttcaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GGAGAAACTCAACAACAAGGCTACTCAAACTGGCCAGTAATTAAATTTAA</left_flank>
        <right_flank>AATTTTTCAAAAATTCCAAAATCCCATCTCATTTACTCCCCTTACTGTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCCTGGAATCTTATAAATTCATTTTTCAGATACGCCCAGGATCCCGTGTCTTCTCAAAATCTCCATCCAGAGCCAACAAAGGCTGCTGGACAGCTTGTGTCAAGAAAAGTGCAATCTCTGGATATAACACAGTCAGCAATCTTGCCATTAGAGCCTTCAACTTCCTCTATTGGTTGATCACTCTTCCATACGTTATCATCAGAACCTACTGGCACAAGTACAAGCCAAAGAGTGAGATCGCTTGTGCTCTGATCTTCATAGCCTGTCTTATCATACTCACTGTGGGGTACATCCGTCTGTTCCCCAAGTTCCACTCAAATATGATCAAGCTGGAGATAAGCACATCGTCCTTCCAAGCCGTCGTCTCCTCCATACCACCTATGGAAAGATCGCCGTGTGGTCCGAGAATGTGCACAATTGGGCTCAAGGCCATTGGCAATATCTTTCGGAGAAACTCAACAACAAGGCTACTCAAACTGGCCAGTAATTAAATTTAATAATTTTTCAAAAATTCCAAAATCCCATCTCATTTACTCCCCTTACTGTTCCCCTTCTTTTTAACATGGCGAGGTTAGGCACTCATATGGCGTGTACTAGTTGAAACTGCTTCGTCATACCAGTGCAAAAAATAGTTGATGCTCCTAGATAAGCTCCTCCCCCTTTAGTACTTCCAGCTAGGCAACTATTTAAGGCGTTGCAGCTCCAACTTACGCGCCTCCAACTGACTTCTTGATCATGACTCCTTATGAACAGTAATCCATTTTTTTTTTGTACTATCTCCTATATATCTCTCTGACTCTATCCTCCTCTCTCCTTCTCTCTCTCTCACTCCAAACCAATGTTCCTCCTTTCATCCCGTCTGATGTGCATTTTGCAAAATAATTCGGATATTCCCCAGCCTCTTCTCCCCATCTTATCATCACAATTTTTGATCTAATTCCCTTTTTCCCCTGAAAGTACTTTCTCTCAAATATTGTATCTGCCTTACATGTTACTGA</canonical>
            <polymorphic>AGCCCTGGAATCTTATAAATTCATTTTTCAGATACGCCCAGGATCCCGTGTCTTCTCAAAATCTCCATCCAGAGCCAACAAAGGCTGCTGGACAGCTTGTGTCAAGAAAAGTGCAATCTCTGGATATAACACAGTCAGCAATCTTGCCATTAGAGCCTTCAACTTCCTCTATTGGTTGATCACTCTTCCATACGTTATCATCAGAACCTACTGGCACAAGTACAAGCCAAAGAGTGAGATCGCTTGTGCTCTGATCTTCATAGCCTGTCTTATCATACTCACTGTGGGGTACATCCGTCTGTTCCCCAAGTTCCACTCAAATATGATCAAGCTGGAGATAAGCACATCGTCCTTCCAAGCCGTCGTCTCCTCCATACCACCTATGGAAAGATCGCCGTGTGGTCCGAGAATGTGCACAATTGGGCTCAAGGCCATTGGCAATATCTTTCGGAGAAACTCAACAACAAGGCTACTCAAACTGGCCAGTAATTAAATTTAAKAATTTTTCAAAAATTCCAAAATCCCATCTCATTTACTCCCCTTACTGTTCCCCTTCTTTTTAACATGGCGAGGTTAGGCACTCATATGGCGTGTACTAGTTGAAACTGCTTCGTCATACCAGTGCAAAAAATAGTTGATGCTCCTAGATAAGCTCCTCCCCCTTTAGTACTTCCAGCTAGGCAACTATTTAAGGCGTTGCAGCTCCAACTTACGCGCCTCCAACTGACTTCTTGATCATGACTCCTTATGAACAGTAATCCATTTTTTTTTTGTACTATCTCCTATATATCTCTCTGACTCTATCCTCCTCTCTCCTTCTCTCTCTCTCACTCCAAACCAATGTTCCTCCTTTCATCCCGTCTGATGTGCATTTTGCAAAATAATTCGGATATTCCCCAGCCTCTTCTCCCCATCTTATCATCACAATTTTTGATCTAATTCCCTTTTTCCCCTGAAAGTACTTTCTCTCAAATATTGTATCTGCCTTACATGTTACTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATGATCAAGCTGGAGATAAG</pcr_primer_p1>
		<pcr_primer_p2>GTTAAAAAGAAGGGGAACAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATATGATCAAGCTGGAGATAAGCACATCGTCCTTCCAAGCCGTCGTCTCCTCCATACCACCTATGGAAAGATCGCCGTGTGGTCCGAGAATGTGCACAATTGGGCTCAAGGCCATTGGCAATATCTTTCGGAGAAACTCAACAACAAGGCTACTCAAACTGGCCAGTAATTAAATTTAATAATTTTTCAAAAATTCCAAAATCCCATCTCATTTACTCCCCTTACTGTTCCCCTTCTTTTTAAC</canonical_amplicon>
		<polymorphic_amplicon>AATATGATCAAGCTGGAGATAAGCACATCGTCCTTCCAAGCCGTCGTCTCCTCCATACCACCTATGGAAAGATCGCCGTGTGGTCCGAGAATGTGCACAATTGGGCTCAAGGCCATTGGCAATATCTTTCGGAGAAACTCAACAACAAGGCTACTCAAACTGGCCAGTAATTAAATTTAAKAATTTTTCAAAAATTCCAAAATCCCATCTCATTTACTCCCCTTACTGTTCCCCTTCTTTTTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3559</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>230533</contig_pos>
        <strand>+</strand>
        <context>CTTTAGTACT[C/T]CCAGCTAGGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGCAAAAAATAGTTGATGCTCCTAGATAAGCTCCTCCCCCTTTAGTACT</left_flank>
        <right_flank>CCAGCTAGGCAACTATTTAAGGCGTTGCAGCTCCAACTTACGCGCCTCCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTTGATCACTCTTCCATACGTTATCATCAGAACCTACTGGCACAAGTACAAGCCAAAGAGTGAGATCGCTTGTGCTCTGATCTTCATAGCCTGTCTTATCATACTCACTGTGGGGTACATCCGTCTGTTCCCCAAGTTCCACTCAAATATGATCAAGCTGGAGATAAGCACATCGTCCTTCCAAGCCGTCGTCTCCTCCATACCACCTATGGAAAGATCGCCGTGTGGTCCGAGAATGTGCACAATTGGGCTCAAGGCCATTGGCAATATCTTTCGGAGAAACTCAACAACAAGGCTACTCAAACTGGCCAGTAATTAAATTTAATAATTTTTCAAAAATTCCAAAATCCCATCTCATTTACTCCCCTTACTGTTCCCCTTCTTTTTAACATGGCGAGGTTAGGCACTCATATGGCGTGTACTAGTTGAAACTGCTTCGTCATACCAGTGCAAAAAATAGTTGATGCTCCTAGATAAGCTCCTCCCCCTTTAGTACTTCCAGCTAGGCAACTATTTAAGGCGTTGCAGCTCCAACTTACGCGCCTCCAACTGACTTCTTGATCATGACTCCTTATGAACAGTAATCCATTTTTTTTTTGTACTATCTCCTATATATCTCTCTGACTCTATCCTCCTCTCTCCTTCTCTCTCTCTCACTCCAAACCAATGTTCCTCCTTTCATCCCGTCTGATGTGCATTTTGCAAAATAATTCGGATATTCCCCAGCCTCTTCTCCCCATCTTATCATCACAATTTTTGATCTAATTCCCTTTTTCCCCTGAAAGTACTTTCTCTCAAATATTGTATCTGCCTTACATGTTACTGATGAATACTATAATTCAATAATAAAAGAGTTTATGCAAAAAATGTGGTTTTCTTCGTCTATAATTTACCGACATTACTGGGGAAAAGAAAATCTGGAGAACGCGGATAGCGCCGAACTACCGTAGGTAGCAAATACATTTATTTTCATATTTTTCCGGCAGTTTTCATTTTAG</canonical>
            <polymorphic>TGGTTGATCACTCTTCCATACGTTATCATCAGAACCTACTGGCACAAGTACAAGCCAAAGAGTGAGATCGCTTGTGCTCTGATCTTCATAGCCTGTCTTATCATACTCACTGTGGGGTACATCCGTCTGTTCCCCAAGTTCCACTCAAATATGATCAAGCTGGAGATAAGCACATCGTCCTTCCAAGCCGTCGTCTCCTCCATACCACCTATGGAAAGATCGCCGTGTGGTCCGAGAATGTGCACAATTGGGCTCAAGGCCATTGGCAATATCTTTCGGAGAAACTCAACAACAAGGCTACTCAAACTGGCCAGTAATTAAATTTAATAATTTTTCAAAAATTCCAAAATCCCATCTCATTTACTCCCCTTACTGTTCCCCTTCTTTTTAACATGGCGAGGTTAGGCACTCATATGGCGTGTACTAGTTGAAACTGCTTCGTCATACCAGTGCAAAAAATAGTTGATGCTCCTAGATAAGCTCCTCCCCCTTTAGTACTYCCAGCTAGGCAACTATTTAAGGCGTTGCAGCTCCAACTTACGCGCCTCCAACTGACTTCTTGATCATGACTCCTTATGAACAGTAATCCATTTTTTTTTTGTACTATCTCCTATATATCTCTCTGACTCTATCCTCCTCTCTCCTTCTCTCTCTCTCACTCCAAACCAATGTTCCTCCTTTCATCCCGTCTGATGTGCATTTTGCAAAATAATTCGGATATTCCCCAGCCTCTTCTCCCCATCTTATCATCACAATTTTTGATCTAATTCCCTTTTTCCCCTGAAAGTACTTTCTCTCAAATATTGTATCTGCCTTACATGTTACTGATGAATACTATAATTCAATAATAAAAGAGTTTATGCAAAAAATGTGGTTTTCTTCGTCTATAATTTACCGACATTACTGGGGAAAAGAAAATCTGGAGAACGCGGATAGCGCCGAACTACCGTAGGTAGCAAATACATTTATTTTCATATTTTTCCGGCAGTTTTCATTTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATCCCATCTCATTTACTC</pcr_primer_p1>
		<pcr_primer_p2>AAAATGGATTACTGTTCATAAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAATCCCATCTCATTTACTCCCCTTACTGTTCCCCTTCTTTTTAACATGGCGAGGTTAGGCACTCATATGGCGTGTACTAGTTGAAACTGCTTCGTCATACCAGTGCAAAAAATAGTTGATGCTCCTAGATAAGCTCCTCCCCCTTTAGTACTTCCAGCTAGGCAACTATTTAAGGCGTTGCAGCTCCAACTTACGCGCCTCCAACTGACTTCTTGATCATGACTCCTTATGAACAGTAATCCATTTT</canonical_amplicon>
		<polymorphic_amplicon>CAAAATCCCATCTCATTTACTCCCCTTACTGTTCCCCTTCTTTTTAACATGGCGAGGTTAGGCACTCATATGGCGTGTACTAGTTGAAACTGCTTCGTCATACCAGTGCAAAAAATAGTTGATGCTCCTAGATAAGCTCCTCCCCCTTTAGTACTYCCAGCTAGGCAACTATTTAAGGCGTTGCAGCTCCAACTTACGCGCCTCCAACTGACTTCTTGATCATGACTCCTTATGAACAGTAATCCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3560</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>231643</contig_pos>
        <strand>+</strand>
        <context>AAGGTGAATG[A/G]AGTGTGATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGATAGCAAAAAATTAGAGTGAAGTTGCAAGAGATGATGAAGGTGAATG</left_flank>
        <right_flank>AGTGTGATGAATGAAGTGTAGAATGATTTAACGGATCCTCGTTCATGCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGACCTTCGACCACGGGAAGCGGTATTTCTCTTCAACAGTTTCGATTTTTGTTAATTGAACAATAATTGGAATATTTTTATGCTGATTTTTTTCCCTGATTCCACTCGACATAAACGATTACTAACAATATGATCTCAAAACTTTTGAAACTTTACTGAAACAGAAATACTCAGAGGAAATTTGGCCTAATAGCGCGTCATTTGGCAAGGCGCTACATGCATTTCACGCCTTGCCAAATCGACCCGCTATTAGCCGTTTTGGACCGCTATTAGCCGCATAGGGGCTCAATACGGTAGCTGTGAAGCGTATAGTAGCGCGGAATACGCTCCTAAATTAATTGTCGATTTACGTAGAAAAAAAATATCGGACTAACTATAGAAATGATGATCTTTATTAAATTACTGAAAACGTATAACAATAAAAGAGATTGGATAATGTAATATGATTGGATAGCAAAAAATTAGAGTGAAGTTGCAAGAGATGATGAAGGTGAATGAAGTGTGATGAATGAAGTGTAGAATGATTTAACGGATCCTCGTTCATGCCGTCATCGTTCGGAAATCATGCCGTCATCGTTCAGAAATAAATTAAAAGTAAATAATGCGCCAGGAAGATCGAGTGATCTTCGCTAATAGCCGGGAAGATGCCGAGAAGGCGCCACTCGACGCTAAAATCCTCTGAGTTAGTATTCGTACAATTATGCTTCAAATTATCAAAAAACCACCATTACAGCAAAACTGAATACCGTAAAACCTGAGCGAGGGTGGGCGGAGCTTGGGTCTGGTAGCGAAATTCTTAAAGGAGCATGTATTTTTTGTACTTCTTTTTTAGCCTTTTTTGCTATTTTTCAATGAATTTCTTTTCGATTTTTAGCTTTTTCAAAAATAGGTAAAATTACAAAAATCGCTTTGAAAACTGTAAAAAACATTCTTTAATGATTTTGAATTTTGTCAGAACAAAAAAATTCGAAAAATCGCAAAAACAGAGCAAAAAAACA</canonical>
            <polymorphic>TGGGACCTTCGACCACGGGAAGCGGTATTTCTCTTCAACAGTTTCGATTTTTGTTAATTGAACAATAATTGGAATATTTTTATGCTGATTTTTTTCCCTGATTCCACTCGACATAAACGATTACTAACAATATGATCTCAAAACTTTTGAAACTTTACTGAAACAGAAATACTCAGAGGAAATTTGGCCTAATAGCGCGTCATTTGGCAAGGCGCTACATGCATTTCACGCCTTGCCAAATCGACCCGCTATTAGCCGTTTTGGACCGCTATTAGCCGCATAGGGGCTCAATACGGTAGCTGTGAAGCGTATAGTAGCGCGGAATACGCTCCTAAATTAATTGTCGATTTACGTAGAAAAAAAATATCGGACTAACTATAGAAATGATGATCTTTATTAAATTACTGAAAACGTATAACAATAAAAGAGATTGGATAATGTAATATGATTGGATAGCAAAAAATTAGAGTGAAGTTGCAAGAGATGATGAAGGTGAATGRAGTGTGATGAATGAAGTGTAGAATGATTTAACGGATCCTCGTTCATGCCGTCATCGTTCGGAAATCATGCCGTCATCGTTCAGAAATAAATTAAAAGTAAATAATGCGCCAGGAAGATCGAGTGATCTTCGCTAATAGCCGGGAAGATGCCGAGAAGGCGCCACTCGACGCTAAAATCCTCTGAGTTAGTATTCGTACAATTATGCTTCAAATTATCAAAAAACCACCATTACAGCAAAACTGAATACCGTAAAACCTGAGCGAGGGTGGGCGGAGCTTGGGTCTGGTAGCGAAATTCTTAAAGGAGCATGTATTTTTTGTACTTCTTTTTTAGCCTTTTTTGCTATTTTTCAATGAATTTCTTTTCGATTTTTAGCTTTTTCAAAAATAGGTAAAATTACAAAAATCGCTTTGAAAACTGTAAAAAACATTCTTTAATGATTTTGAATTTTGTCAGAACAAAAAAATTCGAAAAATCGCAAAAACAGAGCAAAAAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGGACTAACTATAGAAATGATGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTAATTTATTTCTGAACGATGA</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>TCGGACTAACTATAGAAATGATGATCTTTATTAAATTACTGAAAACGTATAACAATAAAAGAGATTGGATAATGTAATATGATTGGATAGCAAAAAATTAGAGTGAAGTTGCAAGAGATGATGAAGGTGAATGAAGTGTGATGAATGAAGTGTAGAATGATTTAACGGATCCTCGTTCATGCCGTCATCGTTCGGAAATCATGCCGTCATCGTTCAGAAATAAATTAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCGGACTAACTATAGAAATGATGATCTTTATTAAATTACTGAAAACGTATAACAATAAAAGAGATTGGATAATGTAATATGATTGGATAGCAAAAAATTAGAGTGAAGTTGCAAGAGATGATGAAGGTGAATGRAGTGTGATGAATGAAGTGTAGAATGATTTAACGGATCCTCGTTCATGCCGTCATCGTTCGGAAATCATGCCGTCATCGTTCAGAAATAAATTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3561</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>231555</contig_pos>
        <strand>+</strand>
        <context>TTACTGAAAA[A/C]GTATAACAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATATCGGACTAACTATAGAAATGATGATCTTTATTAAATTACTGAAAA</left_flank>
        <right_flank>GTATAACAATAAAAGAGATTGGATAATGTAATATGATTGGATAGCAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGAGGTTATTAACACAAAAGCTTTCGAAAAGCAATAGTAATCGAGACAAAATGACTGAAATTTTTAGGTTACTGTAGTTGTTGTTGTGGGACCTTCGACCACGGGAAGCGGTATTTCTCTTCAACAGTTTCGATTTTTGTTAATTGAACAATAATTGGAATATTTTTATGCTGATTTTTTTCCCTGATTCCACTCGACATAAACGATTACTAACAATATGATCTCAAAACTTTTGAAACTTTACTGAAACAGAAATACTCAGAGGAAATTTGGCCTAATAGCGCGTCATTTGGCAAGGCGCTACATGCATTTCACGCCTTGCCAAATCGACCCGCTATTAGCCGTTTTGGACCGCTATTAGCCGCATAGGGGCTCAATACGGTAGCTGTGAAGCGTATAGTAGCGCGGAATACGCTCCTAAATTAATTGTCGATTTACGTAGAAAAAAAATATCGGACTAACTATAGAAATGATGATCTTTATTAAATTACTGAAAACGTATAACAATAAAAGAGATTGGATAATGTAATATGATTGGATAGCAAAAAATTAGAGTGAAGTTGCAAGAGATGATGAAGGTGAATGAAGTGTGATGAATGAAGTGTAGAATGATTTAACGGATCCTCGTTCATGCCGTCATCGTTCGGAAATCATGCCGTCATCGTTCAGAAATAAATTAAAAGTAAATAATGCGCCAGGAAGATCGAGTGATCTTCGCTAATAGCCGGGAAGATGCCGAGAAGGCGCCACTCGACGCTAAAATCCTCTGAGTTAGTATTCGTACAATTATGCTTCAAATTATCAAAAAACCACCATTACAGCAAAACTGAATACCGTAAAACCTGAGCGAGGGTGGGCGGAGCTTGGGTCTGGTAGCGAAATTCTTAAAGGAGCATGTATTTTTTGTACTTCTTTTTTAGCCTTTTTTGCTATTTTTCAATGAATTTCTTTTCGATTTTTAGCTTTTTCAAAAATAGGTAAAATTACAAAAATCGCTT</canonical>
            <polymorphic>TTGGAGGTTATTAACACAAAAGCTTTCGAAAAGCAATAGTAATCGAGACAAAATGACTGAAATTTTTAGGTTACTGTAGTTGTTGTTGTGGGACCTTCGACCACGGGAAGCGGTATTTCTCTTCAACAGTTTCGATTTTTGTTAATTGAACAATAATTGGAATATTTTTATGCTGATTTTTTTCCCTGATTCCACTCGACATAAACGATTACTAACAATATGATCTCAAAACTTTTGAAACTTTACTGAAACAGAAATACTCAGAGGAAATTTGGCCTAATAGCGCGTCATTTGGCAAGGCGCTACATGCATTTCACGCCTTGCCAAATCGACCCGCTATTAGCCGTTTTGGACCGCTATTAGCCGCATAGGGGCTCAATACGGTAGCTGTGAAGCGTATAGTAGCGCGGAATACGCTCCTAAATTAATTGTCGATTTACGTAGAAAAAAAATATCGGACTAACTATAGAAATGATGATCTTTATTAAATTACTGAAAAMGTATAACAATAAAAGAGATTGGATAATGTAATATGATTGGATAGCAAAAAATTAGAGTGAAGTTGCAAGAGATGATGAAGGTGAATGAAGTGTGATGAATGAAGTGTAGAATGATTTAACGGATCCTCGTTCATGCCGTCATCGTTCGGAAATCATGCCGTCATCGTTCAGAAATAAATTAAAAGTAAATAATGCGCCAGGAAGATCGAGTGATCTTCGCTAATAGCCGGGAAGATGCCGAGAAGGCGCCACTCGACGCTAAAATCCTCTGAGTTAGTATTCGTACAATTATGCTTCAAATTATCAAAAAACCACCATTACAGCAAAACTGAATACCGTAAAACCTGAGCGAGGGTGGGCGGAGCTTGGGTCTGGTAGCGAAATTCTTAAAGGAGCATGTATTTTTTGTACTTCTTTTTTAGCCTTTTTTGCTATTTTTCAATGAATTTCTTTTCGATTTTTAGCTTTTTCAAAAATAGGTAAAATTACAAAAATCGCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>501 439 60</canonical_bands>
                <polymorphic_bands>561 439</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTAGCTGTGAAGCGTATAGTAG</pcr_primer_p1>
		<pcr_primer_p2>GGATCCGTTAAATCATTCTACA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GGTAGCTGTGAAGCGTATAGTAGCGCGGAATACGCTCCTAAATTAATTGTCGATTTACGTAGAAAAAAAATATCGGACTAACTATAGAAATGATGATCTTTATTAAATTACTGAAAACGTATAACAATAAAAGAGATTGGATAATGTAATATGATTGGATAGCAAAAAATTAGAGTGAAGTTGCAAGAGATGATGAAGGTGAATGAAGTGTGATGAATGAAGTGTAGAATGATTTAACGGATCC</canonical_amplicon>
		<polymorphic_amplicon>GGTAGCTGTGAAGCGTATAGTAGCGCGGAATACGCTCCTAAATTAATTGTCGATTTACGTAGAAAAAAAATATCGGACTAACTATAGAAATGATGATCTTTATTAAATTACTGAAAAMGTATAACAATAAAAGAGATTGGATAATGTAATATGATTGGATAGCAAAAAATTAGAGTGAAGTTGCAAGAGATGATGAAGGTGAATGAAGTGTGATGAATGAAGTGTAGAATGATTTAACGGATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3562</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>11351</contig_pos>
        <strand></strand>
        <context>ttaaaaattc[C/G]aaatttcgga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CATTCAGATTCTTTTTTCGGAAGGTCGAAAATTCCAGTTTTTAAAAATTC</left_flank>
        <right_flank>AAATTTCGGAACCTTCGGAATTTCGCAAATAGAAATTTTTAAAAGCGCAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTCTTTTCATGGGAATCGTGCCATAACTTTCTTCAGACCGCAAAACTCCAAAGCGGAGAACCTTAATCATTCAGTATGTTTTCCTCTACAATTATGTGCTCGTACCTTATCCTTCATTCCATTCCCCTTTCATCATCTCTTTTCATGGTAACATATAATTTCAAAAGAGGAAGAGACAAGCTGTGTCCAACAGCCGTTCTCCTTTGTATTCTATCCGTACGAATGCATATATTCTATGAATCAGAGAGTCTTCCTTCTGGCTCATCTTGTCTTGTTTTAATTCACACCTTCCAAGATTTGACTCTTCTTCTTCTTCTTTATTCTGATGTTTGGGATTGGCTTTTTCTGTTCAATTGAAATTTTATTAGATAAATCTAGATAGGAGCCTAGATAGCTGAGTTCTTCTTTTGAAGAAGAGTATCGTAGTCGTAGTCTCAGGCTGTCTTGCATTCAGATTCTTTTTTCGGAAGGTCGAAAATTCCAGTTTTTAAAAATTCCAAATTTCGGAACCTTCGGAATTTCGCAAATAGAAATTTTTAAAAGCGCAAAAGATCTATTAAAAACTTTGTAAAAAACTAAACATATTTCGATAACTGCATTCTTTTGTGGCTCCGCGTCACTTCGAAACCAGTCATTTCGAAACCGAGTCGCAACCGGGGTAACACAGGCAAAAATAGATAAATTTCAGACTACAAAAACAATTTTAGGGTTTCATGCTTTTTTTCAGATAGAAAACAATCTGAAAATCGAAAAATTCTAAATTTTTTCTTCTTTTGAGAACATCAAGTTTTGGTTTTTTTTCGATTTTCGGAATGTGTTCTATCAGAAAAAGCATATTTGAAAACGCGAAAAATTGGTATAAATATAATTTTTTGTTTGATTCAAAAAAACTGAAATTTCCAATAAGTTTTCTCAAGTCTAGGTATTGTTATGATGGTTCAACGATGAATAGCGCAATTTTGGTATTTTCATGGGATGAAGCAGCTTTGACAAGTGAT</canonical>
            <polymorphic>CCTTCTTTTCATGGGAATCGTGCCATAACTTTCTTCAGACCGCAAAACTCCAAAGCGGAGAACCTTAATCATTCAGTATGTTTTCCTCTACAATTATGTGCTCGTACCTTATCCTTCATTCCATTCCCCTTTCATCATCTCTTTTCATGGTAACATATAATTTCAAAAGAGGAAGAGACAAGCTGTGTCCAACAGCCGTTCTCCTTTGTATTCTATCCGTACGAATGCATATATTCTATGAATCAGAGAGTCTTCCTTCTGGCTCATCTTGTCTTGTTTTAATTCACACCTTCCAAGATTTGACTCTTCTTCTTCTTCTTTATTCTGATGTTTGGGATTGGCTTTTTCTGTTCAATTGAAATTTTATTAGATAAATCTAGATAGGAGCCTAGATAGCTGAGTTCTTCTTTTGAAGAAGAGTATCGTAGTCGTAGTCTCAGGCTGTCTTGCATTCAGATTCTTTTTTCGGAAGGTCGAAAATTCCAGTTTTTAAAAATTCSAAATTTCGGAACCTTCGGAATTTCGCAAATAGAAATTTTTAAAAGCGCAAAAGATCTATTAAAAACTTTGTAAAAAACTAAACATATTTCGATAACTGCATTCTTTTGTGGCTCCGCGTCACTTCGAAACCAGTCATTTCGAAACCGAGTCGCAACCGGGGTAACACAGGCAAAAATAGATAAATTTCAGACTACAAAAACAATTTTAGGGTTTCATGCTTTTTTTCAGATAGAAAACAATCTGAAAATCGAAAAATTCTAAATTTTTTCTTCTTTTGAGAACATCAAGTTTTGGTTTTTTTTCGATTTTCGGAATGTGTTCTATCAGAAAAAGCATATTTGAAAACGCGAAAAATTGGTATAAATATAATTTTTTGTTTGATTCAAAAAAACTGAAATTTCCAATAAGTTTTCTCAAGTCTAGGTATTGTTATGATGGTTCAACGATGAATAGCGCAATTTTGGTATTTTCATGGGATGAAGCAGCTTTGACAAGTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTCTTGCATTCAGATTCTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTATCTATTTTTGCCTGTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTGTCTTGCATTCAGATTCTTTTTTCGGAAGGTCGAAAATTCCAGTTTTTAAAAATTCCAAATTTCGGAACCTTCGGAATTTCGCAAATAGAAATTTTTAAAAGCGCAAAAGATCTATTAAAAACTTTGTAAAAAACTAAACATATTTCGATAACTGCATTCTTTTGTGGCTCCGCGTCACTTCGAAACCAGTCATTTCGAAACCGAGTCGCAACCGGGGTAACACAGGCAAAAATAGATAAATTT</canonical_amplicon>
		<polymorphic_amplicon>CTGTCTTGCATTCAGATTCTTTTTTCGGAAGGTCGAAAATTCCAGTTTTTAAAAATTCSAAATTTCGGAACCTTCGGAATTTCGCAAATAGAAATTTTTAAAAGCGCAAAAGATCTATTAAAAACTTTGTAAAAAACTAAACATATTTCGATAACTGCATTCTTTTGTGGCTCCGCGTCACTTCGAAACCAGTCATTTCGAAACCGAGTCGCAACCGGGGTAACACAGGCAAAAATAGATAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3563</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>11224</contig_pos>
        <strand>+</strand>
        <context>TTTATTAGAT[A/C]AATCTAGATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCTGATGTTTGGGATTGGCTTTTTCTGTTCAATTGAAATTTTATTAGAT</left_flank>
        <right_flank>AATCTAGATAGGAGCCTAGATAGCTGAGTTCTTCTTTTGAAGAAGAGTAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGCTCATTTTAAAAAGACATTTTGGGAAGTTGAGTATACATGGTTCAGGAGAGTACTCTCCAGGTTTACAATCATTTACAACTGTTTGCACCTATGTATTAACGTATCACTTTATCTTATCACTTCCTTCTTTTCATGGGAATCGTGCCATAACTTTCTTCAGACCGCAAAACTCCAAAGCGGAGAACCTTAATCATTCAGTATGTTTTCCTCTACAATTATGTGCTCGTACCTTATCCTTCATTCCATTCCCCTTTCATCATCTCTTTTCATGGTAACATATAATTTCAAAAGAGGAAGAGACAAGCTGTGTCCAACAGCCGTTCTCCTTTGTATTCTATCCGTACGAATGCATATATTCTATGAATCAGAGAGTCTTCCTTCTGGCTCATCTTGTCTTGTTTTAATTCACACCTTCCAAGATTTGACTCTTCTTCTTCTTCTTTATTCTGATGTTTGGGATTGGCTTTTTCTGTTCAATTGAAATTTTATTAGATAAATCTAGATAGGAGCCTAGATAGCTGAGTTCTTCTTTTGAAGAAGAGTATCGTAGTCGTAGTCTCAGGCTGTCTTGCATTCAGATTCTTTTTTCGGAAGGTCGAAAATTCCAGTTTTTAAAAATTCCAAATTTCGGAACCTTCGGAATTTCGCAAATAGAAATTTTTAAAAGCGCAAAAGATCTATTAAAAACTTTGTAAAAAACTAAACATATTTCGATAACTGCATTCTTTTGTGGCTCCGCGTCACTTCGAAACCAGTCATTTCGAAACCGAGTCGCAACCGGGGTAACACAGGCAAAAATAGATAAATTTCAGACTACAAAAACAATTTTAGGGTTTCATGCTTTTTTTCAGATAGAAAACAATCTGAAAATCGAAAAATTCTAAATTTTTTCTTCTTTTGAGAACATCAAGTTTTGGTTTTTTTTCGATTTTCGGAATGTGTTCTATCAGAAAAAGCATATTTGAAAACGCGAAAAATTGGTATAAATATAATTT</canonical>
            <polymorphic>GGTGCTCATTTTAAAAAGACATTTTGGGAAGTTGAGTATACATGGTTCAGGAGAGTACTCTCCAGGTTTACAATCATTTACAACTGTTTGCACCTATGTATTAACGTATCACTTTATCTTATCACTTCCTTCTTTTCATGGGAATCGTGCCATAACTTTCTTCAGACCGCAAAACTCCAAAGCGGAGAACCTTAATCATTCAGTATGTTTTCCTCTACAATTATGTGCTCGTACCTTATCCTTCATTCCATTCCCCTTTCATCATCTCTTTTCATGGTAACATATAATTTCAAAAGAGGAAGAGACAAGCTGTGTCCAACAGCCGTTCTCCTTTGTATTCTATCCGTACGAATGCATATATTCTATGAATCAGAGAGTCTTCCTTCTGGCTCATCTTGTCTTGTTTTAATTCACACCTTCCAAGATTTGACTCTTCTTCTTCTTCTTTATTCTGATGTTTGGGATTGGCTTTTTCTGTTCAATTGAAATTTTATTAGATMAATCTAGATAGGAGCCTAGATAGCTGAGTTCTTCTTTTGAAGAAGAGTATCGTAGTCGTAGTCTCAGGCTGTCTTGCATTCAGATTCTTTTTTCGGAAGGTCGAAAATTCCAGTTTTTAAAAATTCCAAATTTCGGAACCTTCGGAATTTCGCAAATAGAAATTTTTAAAAGCGCAAAAGATCTATTAAAAACTTTGTAAAAAACTAAACATATTTCGATAACTGCATTCTTTTGTGGCTCCGCGTCACTTCGAAACCAGTCATTTCGAAACCGAGTCGCAACCGGGGTAACACAGGCAAAAATAGATAAATTTCAGACTACAAAAACAATTTTAGGGTTTCATGCTTTTTTTCAGATAGAAAACAATCTGAAAATCGAAAAATTCTAAATTTTTTCTTCTTTTGAGAACATCAAGTTTTGGTTTTTTTTCGATTTTCGGAATGTGTTCTATCAGAAAAAGCATATTTGAAAACGCGAAAAATTGGTATAAATATAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGTTCTCCTTTGTATTCTATC</pcr_primer_p1>
		<pcr_primer_p2>CCTGAGACTACGACTACGATACT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CCGTTCTCCTTTGTATTCTATCCGTACGAATGCATATATTCTATGAATCAGAGAGTCTTCCTTCTGGCTCATCTTGTCTTGTTTTAATTCACACCTTCCAAGATTTGACTCTTCTTCTTCTTCTTTATTCTGATGTTTGGGATTGGCTTTTTCTGTTCAATTGAAATTTTATTAGATAAATCTAGATAGGAGCCTAGATAGCTGAGTTCTTCTTTTGAAGAAGAGTATCGTAGTCGTAGTCTCAGG</canonical_amplicon>
		<polymorphic_amplicon>CCGTTCTCCTTTGTATTCTATCCGTACGAATGCATATATTCTATGAATCAGAGAGTCTTCCTTCTGGCTCATCTTGTCTTGTTTTAATTCACACCTTCCAAGATTTGACTCTTCTTCTTCTTCTTTATTCTGATGTTTGGGATTGGCTTTTTCTGTTCAATTGAAATTTTATTAGATMAATCTAGATAGGAGCCTAGATAGCTGAGTTCTTCTTTTGAAGAAGAGTATCGTAGTCGTAGTCTCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3564</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>195862</contig_pos>
        <strand>+</strand>
        <context>CGGATTTTTT[C/T]GAATTGAAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGACATTCTGAAACTCGATTTTTTTGAAAAACATAAGTTTCGGATTTTTT</left_flank>
        <right_flank>GAATTGAAGTGAGCATTTTAAAATACTTTTAGTTCTGTAGAATAATCAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGAAAGCATCAACATCTGGTAAGCACTACTACTGCGCTGCTCATTCACTTGGCCAATACTTCATGCTTCATTGGCTCAAGAAGAAGAGGAGCACACATAACGCAAAACACTTTCCGGTGAGCTTCAAGAAGTACCAATATAAGCTTAATTAGAAAGAGAAAAGGAAAAAAACAATGTTTATGTGTGAGTGACCGATCTCACTTTTTGTTTCAATGATCCAGCTCAAAAGGAAATGGATCTAGGTCAGACGTGATGTTTTGAGGTACCGAAGGCCTGGAAATTTGCTCCATGACATTTCAAAAGGCTCTCTAGAGCGGTGACACTACGAAACCGATAAAAAACATTCAAAAAGATAAATTTCAGGCTCAAAAAACAATCATTGGGTTTTCGAATGTGTTTTTTGAGTCTGAAATTTATCTATTTGCCTGTATGATACCGGTTTCGAATTGACATTCTGAAACTCGATTTTTTTGAAAAACATAAGTTTCGGATTTTTTTGAATTGAAGTGAGCATTTTAAAATACTTTTAGTTCTGTAGAATAATCAGAATTTCATGAGATTGAAAATACCGTAGAACCTGAAATGGAAGGGCTCCCTAATTTTTCTACTTGGAACCAATTTATCTCAGTTCCTGTGAAAGATACAAAAAAGTTGTCAACTAATGAATTTTTTATCATAATATCACAAACATTTTATCAATTGACAAACTTTTGATATCTGTAATAGGAGCCGAGATAATTGAACTCACACTTGACTACAGGTTTTACGATATCTGAATTTTTCACTGCAAAGTCAGAACGCTTGTTTTAGCGGAATCAAATCCCAAGTACTGAAACTTTGAGATTCTGATATTTTGAAATTCTGAATTTTTGATATTGTGAAGATCTGAAATTTTGCGGTTCTTCAAATCTGAAATTCTGAAATTCTGGAAATCAAAAACTATAATATAAAAATTTGTGATTCTGTGATTCTGAAACCCTGAAATTTAAAAACCTGGC</canonical>
            <polymorphic>AATGAAAGCATCAACATCTGGTAAGCACTACTACTGCGCTGCTCATTCACTTGGCCAATACTTCATGCTTCATTGGCTCAAGAAGAAGAGGAGCACACATAACGCAAAACACTTTCCGGTGAGCTTCAAGAAGTACCAATATAAGCTTAATTAGAAAGAGAAAAGGAAAAAAACAATGTTTATGTGTGAGTGACCGATCTCACTTTTTGTTTCAATGATCCAGCTCAAAAGGAAATGGATCTAGGTCAGACGTGATGTTTTGAGGTACCGAAGGCCTGGAAATTTGCTCCATGACATTTCAAAAGGCTCTCTAGAGCGGTGACACTACGAAACCGATAAAAAACATTCAAAAAGATAAATTTCAGGCTCAAAAAACAATCATTGGGTTTTCGAATGTGTTTTTTGAGTCTGAAATTTATCTATTTGCCTGTATGATACCGGTTTCGAATTGACATTCTGAAACTCGATTTTTTTGAAAAACATAAGTTTCGGATTTTTTYGAATTGAAGTGAGCATTTTAAAATACTTTTAGTTCTGTAGAATAATCAGAATTTCATGAGATTGAAAATACCGTAGAACCTGAAATGGAAGGGCTCCCTAATTTTTCTACTTGGAACCAATTTATCTCAGTTCCTGTGAAAGATACAAAAAAGTTGTCAACTAATGAATTTTTTATCATAATATCACAAACATTTTATCAATTGACAAACTTTTGATATCTGTAATAGGAGCCGAGATAATTGAACTCACACTTGACTACAGGTTTTACGATATCTGAATTTTTCACTGCAAAGTCAGAACGCTTGTTTTAGCGGAATCAAATCCCAAGTACTGAAACTTTGAGATTCTGATATTTTGAAATTCTGAATTTTTGATATTGTGAAGATCTGAAATTTTGCGGTTCTTCAAATCTGAAATTCTGAAATTCTGGAAATCAAAAACTATAATATAAAAATTTGTGATTCTGTGATTCTGAAACCCTGAAATTTAAAAACCTGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGACACTACGAAACCGATAA</pcr_primer_p1>
		<pcr_primer_p2>CTCATGAAATTCTGATTATTCTACA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTGACACTACGAAACCGATAAAAAACATTCAAAAAGATAAATTTCAGGCTCAAAAAACAATCATTGGGTTTTCGAATGTGTTTTTTGAGTCTGAAATTTATCTATTTGCCTGTATGATACCGGTTTCGAATTGACATTCTGAAACTCGATTTTTTTGAAAAACATAAGTTTCGGATTTTTTTGAATTGAAGTGAGCATTTTAAAATACTTTTAGTTCTGTAGAATAATCAGAATTTCATGAG</canonical_amplicon>
		<polymorphic_amplicon>GTGACACTACGAAACCGATAAAAAACATTCAAAAAGATAAATTTCAGGCTCAAAAAACAATCATTGGGTTTTCGAATGTGTTTTTTGAGTCTGAAATTTATCTATTTGCCTGTATGATACCGGTTTCGAATTGACATTCTGAAACTCGATTTTTTTGAAAAACATAAGTTTCGGATTTTTTYGAATTGAAGTGAGCATTTTAAAATACTTTTAGTTCTGTAGAATAATCAGAATTTCATGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3565</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>195499</contig_pos>
        <strand>+</strand>
        <context>CAAGAAGTAC[A/C]AATATAAGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAGGAGCACACATAACGCAAAACACTTTCCGGTGAGCTTCAAGAAGTAC</left_flank>
        <right_flank>AATATAAGCTTAATTAGAAAGAGAAAAGGAAAAAAACAATGTTTATGTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAATCGTTTTTCGCTGTTTGGTGTGCCCTTCTCTCTCTTTTCATCGAATCTGCAGCTGCAGTGTCTTCCGCTGGCCGTTTCCGGTTGTACGAATTGTCTCATCAAGTCATGGTGTTGGTGGTGGGCACCCGCGGGTGTATTCTTCGTTTAATTTGATGCCAAAAAGACAGAGCATGAAGCATTCGAAGGAGAGCACAAACTGCCTTTCTCATCTTTCCTTTCATCGCTACTATATATGGAAAAAATGGGGAAAAAAGAAGTCGACAAATAATGATATAATGATGTGAATCCTCTATCTCTGTGCTTTTCAGAGCTCAATTTATTTATATAAACAATATAGAAGAAGGAAGAAAATGAAGGAAAATGAAAGCATCAACATCTGGTAAGCACTACTACTGCGCTGCTCATTCACTTGGCCAATACTTCATGCTTCATTGGCTCAAGAAGAAGAGGAGCACACATAACGCAAAACACTTTCCGGTGAGCTTCAAGAAGTACCAATATAAGCTTAATTAGAAAGAGAAAAGGAAAAAAACAATGTTTATGTGTGAGTGACCGATCTCACTTTTTGTTTCAATGATCCAGCTCAAAAGGAAATGGATCTAGGTCAGACGTGATGTTTTGAGGTACCGAAGGCCTGGAAATTTGCTCCATGACATTTCAAAAGGCTCTCTAGAGCGGTGACACTACGAAACCGATAAAAAACATTCAAAAAGATAAATTTCAGGCTCAAAAAACAATCATTGGGTTTTCGAATGTGTTTTTTGAGTCTGAAATTTATCTATTTGCCTGTATGATACCGGTTTCGAATTGACATTCTGAAACTCGATTTTTTTGAAAAACATAAGTTTCGGATTTTTTTGAATTGAAGTGAGCATTTTAAAATACTTTTAGTTCTGTAGAATAATCAGAATTTCATGAGATTGAAAATACCGTAGAACCTGAAATGGAAGGGCTCCCTAATTTTTCTACTTGGAACCAATTTATCTCAGTTCCTGT</canonical>
            <polymorphic>TTAATCGTTTTTCGCTGTTTGGTGTGCCCTTCTCTCTCTTTTCATCGAATCTGCAGCTGCAGTGTCTTCCGCTGGCCGTTTCCGGTTGTACGAATTGTCTCATCAAGTCATGGTGTTGGTGGTGGGCACCCGCGGGTGTATTCTTCGTTTAATTTGATGCCAAAAAGACAGAGCATGAAGCATTCGAAGGAGAGCACAAACTGCCTTTCTCATCTTTCCTTTCATCGCTACTATATATGGAAAAAATGGGGAAAAAAGAAGTCGACAAATAATGATATAATGATGTGAATCCTCTATCTCTGTGCTTTTCAGAGCTCAATTTATTTATATAAACAATATAGAAGAAGGAAGAAAATGAAGGAAAATGAAAGCATCAACATCTGGTAAGCACTACTACTGCGCTGCTCATTCACTTGGCCAATACTTCATGCTTCATTGGCTCAAGAAGAAGAGGAGCACACATAACGCAAAACACTTTCCGGTGAGCTTCAAGAAGTACMAATATAAGCTTAATTAGAAAGAGAAAAGGAAAAAAACAATGTTTATGTGTGAGTGACCGATCTCACTTTTTGTTTCAATGATCCAGCTCAAAAGGAAATGGATCTAGGTCAGACGTGATGTTTTGAGGTACCGAAGGCCTGGAAATTTGCTCCATGACATTTCAAAAGGCTCTCTAGAGCGGTGACACTACGAAACCGATAAAAAACATTCAAAAAGATAAATTTCAGGCTCAAAAAACAATCATTGGGTTTTCGAATGTGTTTTTTGAGTCTGAAATTTATCTATTTGCCTGTATGATACCGGTTTCGAATTGACATTCTGAAACTCGATTTTTTTGAAAAACATAAGTTTCGGATTTTTTTGAATTGAAGTGAGCATTTTAAAATACTTTTAGTTCTGTAGAATAATCAGAATTTCATGAGATTGAAAATACCGTAGAACCTGAAATGGAAGGGCTCCCTAATTTTTCTACTTGGAACCAATTTATCTCAGTTCCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATATAGAAGAAGGAAGAAAATGA</pcr_primer_p1>
		<pcr_primer_p2>GATCATTGAAACAAAAAGTGAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAATATAGAAGAAGGAAGAAAATGAAGGAAAATGAAAGCATCAACATCTGGTAAGCACTACTACTGCGCTGCTCATTCACTTGGCCAATACTTCATGCTTCATTGGCTCAAGAAGAAGAGGAGCACACATAACGCAAAACACTTTCCGGTGAGCTTCAAGAAGTACCAATATAAGCTTAATTAGAAAGAGAAAAGGAAAAAAACAATGTTTATGTGTGAGTGACCGATCTCACTTTTTGTTTCAATGATC</canonical_amplicon>
		<polymorphic_amplicon>CAATATAGAAGAAGGAAGAAAATGAAGGAAAATGAAAGCATCAACATCTGGTAAGCACTACTACTGCGCTGCTCATTCACTTGGCCAATACTTCATGCTTCATTGGCTCAAGAAGAAGAGGAGCACACATAACGCAAAACACTTTCCGGTGAGCTTCAAGAAGTACMAATATAAGCTTAATTAGAAAGAGAAAAGGAAAAAAACAATGTTTATGTGTGAGTGACCGATCTCACTTTTTGTTTCAATGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3566</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>204520</contig_pos>
        <strand>+</strand>
        <context>CCTCGTTTTC[A/G]CATTTTTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCCATATTTTGACTACAACATCCTAGAAGTTCATAATTTCCTCGTTTTC</left_flank>
        <right_flank>CATTTTTTCTGGAAATGTCCGGATTCCGGATTCCGTATTCCGCTTCCCGA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCCATTTGTCTCTTGTTCCATTTGTTATTACCTGCCAAAACCGTGGAGACACACAAACCAATCTCGAACACGTCTCCTGAATTCTCGTGTTTAGATCTTTGAAAAGCAGTTGAGCTGATGCACGTTTTTCTTCAGTTTTACTGCCCCGAAGTGAGGAGGATTTAGAACGGAAGTACTTTCAGACTAGTTCGGTTCGCTAGATTAATTTAATGTTTTTTTGGAGGGTTTAGTTCACTTGGTTTCAGTGTGAGGATTCCAATTTCAAGGAAGTCTTTCTCAGTTACATAGGTTTGAAAAGAGGTAGTACTGTAGCTAAGATTCAAAATTCTAAGATCCTAACTATCGAGCGCTAAAACGCGTACTCTTGAGAAGTTTTCCTTCGGATCATCACTCAAATTTTGAAAGTTACTTTAAAATTACATCTCGGTAAGATTCCAATGACTACGATATCCATATTTTGACTACAACATCCTAGAAGTTCATAATTTCCTCGTTTTCACATTTTTTCTGGAAATGTCCGGATTCCGGATTCCGTATTCCGCTTCCCGAATGTGTTATTCCGGAAATATAATTTTTGTGAGGTCTCTAGGGAGGCACTTCATTTAGAGGGACCATGTAATGCATGTTTGACGGTTACTTGGATATGATGTACTTAAAAAGCCCTACAAAATGACGCTATTTAGATTACTGTAACTTGCCTATGAAGAAAATGACAAGGCAGAAACCTGCTGAGCTACGCGGTTGATCTTTTTAACTGTATTACAGCCCTGTAACGTTGCTCATAGGCAAGATACAGTATATCAAATGGTATCATTGTGTATTCTTTGAAATTTTCTATCATATCCAGTTTATTTGGTCCAAAACTATTCATCTTAAAAGAAACTATGACAGTGTCCGTTTTGGATCCGTTTTTGGGCCGTTTTACATTTAAACGGTTAAAAAAATCATGAGAAGTAGTAAACCTAGATGAGGTTCTCAAGCTGCAACATTTTAAGAATC</canonical>
            <polymorphic>TGCCATTTGTCTCTTGTTCCATTTGTTATTACCTGCCAAAACCGTGGAGACACACAAACCAATCTCGAACACGTCTCCTGAATTCTCGTGTTTAGATCTTTGAAAAGCAGTTGAGCTGATGCACGTTTTTCTTCAGTTTTACTGCCCCGAAGTGAGGAGGATTTAGAACGGAAGTACTTTCAGACTAGTTCGGTTCGCTAGATTAATTTAATGTTTTTTTGGAGGGTTTAGTTCACTTGGTTTCAGTGTGAGGATTCCAATTTCAAGGAAGTCTTTCTCAGTTACATAGGTTTGAAAAGAGGTAGTACTGTAGCTAAGATTCAAAATTCTAAGATCCTAACTATCGAGCGCTAAAACGCGTACTCTTGAGAAGTTTTCCTTCGGATCATCACTCAAATTTTGAAAGTTACTTTAAAATTACATCTCGGTAAGATTCCAATGACTACGATATCCATATTTTGACTACAACATCCTAGAAGTTCATAATTTCCTCGTTTTCRCATTTTTTCTGGAAATGTCCGGATTCCGGATTCCGTATTCCGCTTCCCGAATGTGTTATTCCGGAAATATAATTTTTGTGAGGTCTCTAGGGAGGCACTTCATTTAGAGGGACCATGTAATGCATGTTTGACGGTTACTTGGATATGATGTACTTAAAAAGCCCTACAAAATGACGCTATTTAGATTACTGTAACTTGCCTATGAAGAAAATGACAAGGCAGAAACCTGCTGAGCTACGCGGTTGATCTTTTTAACTGTATTACAGCCCTGTAACGTTGCTCATAGGCAAGATACAGTATATCAAATGGTATCATTGTGTATTCTTTGAAATTTTCTATCATATCCAGTTTATTTGGTCCAAAACTATTCATCTTAAAAGAAACTATGACAGTGTCCGTTTTGGATCCGTTTTTGGGCCGTTTTACATTTAAACGGTTAAAAAAATCATGAGAAGTAGTAAACCTAGATGAGGTTCTCAAGCTGCAACATTTTAAGAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>222 141 109 106 81 75 55 46 33 31 25 19 17 17 13 6 2 2</canonical_bands>
                <polymorphic_bands>222 164 141 106 81 75 46 33 31 25 19 17 17 13 6 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGTTTTCCTTCGGATCAT</pcr_primer_p1>
		<pcr_primer_p2>TACATGGTCCCTCTAAATGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGTTTTCCTTCGGATCATCACTCAAATTTTGAAAGTTACTTTAAAATTACATCTCGGTAAGATTCCAATGACTACGATATCCATATTTTGACTACAACATCCTAGAAGTTCATAATTTCCTCGTTTTCACATTTTTTCTGGAAATGTCCGGATTCCGGATTCCGTATTCCGCTTCCCGAATGTGTTATTCCGGAAATATAATTTTTGTGAGGTCTCTAGGGAGGCACTTCATTTAGAGGGACCATGTA</canonical_amplicon>
		<polymorphic_amplicon>GAAGTTTTCCTTCGGATCATCACTCAAATTTTGAAAGTTACTTTAAAATTACATCTCGGTAAGATTCCAATGACTACGATATCCATATTTTGACTACAACATCCTAGAAGTTCATAATTTCCTCGTTTTCRCATTTTTTCTGGAAATGTCCGGATTCCGGATTCCGTATTCCGCTTCCCGAATGTGTTATTCCGGAAATATAATTTTTGTGAGGTCTCTAGGGAGGCACTTCATTTAGAGGGACCATGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3567</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>204643</contig_pos>
        <strand>+</strand>
        <context>CCATGTAATR[A/C]ATGTTTGACG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTTGTGAGGTCTCTAGGGAGGCACTTCATTTAGAGGGACCATGTAATG</left_flank>
        <right_flank>ATGTTTGACGGTTACTTGGATATGATGTACTTAAAAAGCCCTACAAAATG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTTTTCTTCAGTTTTACTGCCCCGAAGTGAGGAGGATTTAGAACGGAAGTACTTTCAGACTAGTTCGGTTCGCTAGATTAATTTAATGTTTTTTTGGAGGGTTTAGTTCACTTGGTTTCAGTGTGAGGATTCCAATTTCAAGGAAGTCTTTCTCAGTTACATAGGTTTGAAAAGAGGTAGTACTGTAGCTAAGATTCAAAATTCTAAGATCCTAACTATCGAGCGCTAAAACGCGTACTCTTGAGAAGTTTTCCTTCGGATCATCACTCAAATTTTGAAAGTTACTTTAAAATTACATCTCGGTAAGATTCCAATGACTACGATATCCATATTTTGACTACAACATCCTAGAAGTTCATAATTTCCTCGTTTTCACATTTTTTCTGGAAATGTCCGGATTCCGGATTCCGTATTCCGCTTCCCGAATGTGTTATTCCGGAAATATAATTTTTGTGAGGTCTCTAGGGAGGCACTTCATTTAGAGGGACCATGTAATGCATGTTTGACGGTTACTTGGATATGATGTACTTAAAAAGCCCTACAAAATGACGCTATTTAGATTACTGTAACTTGCCTATGAAGAAAATGACAAGGCAGAAACCTGCTGAGCTACGCGGTTGATCTTTTTAACTGTATTACAGCCCTGTAACGTTGCTCATAGGCAAGATACAGTATATCAAATGGTATCATTGTGTATTCTTTGAAATTTTCTATCATATCCAGTTTATTTGGTCCAAAACTATTCATCTTAAAAGAAACTATGACAGTGTCCGTTTTGGATCCGTTTTTGGGCCGTTTTACATTTAAACGGTTAAAAAAATCATGAGAAGTAGTAAACCTAGATGAGGTTCTCAAGCTGCAACATTTTAAGAATCCTTTTCTCTCTCTCTCCCTGTCTCTCACTCACTCACTCATAATTCCTATCAACCATACCTACCCAATTTATGAGCACAGCTTTACAGTTCAACGTGTTGTAATTATTTCTGTCGCCCCAATGT</canonical>
            <polymorphic>CGTTTTTCTTCAGTTTTACTGCCCCGAAGTGAGGAGGATTTAGAACGGAAGTACTTTCAGACTAGTTCGGTTCGCTAGATTAATTTAATGTTTTTTTGGAGGGTTTAGTTCACTTGGTTTCAGTGTGAGGATTCCAATTTCAAGGAAGTCTTTCTCAGTTACATAGGTTTGAAAAGAGGTAGTACTGTAGCTAAGATTCAAAATTCTAAGATCCTAACTATCGAGCGCTAAAACGCGTACTCTTGAGAAGTTTTCCTTCGGATCATCACTCAAATTTTGAAAGTTACTTTAAAATTACATCTCGGTAAGATTCCAATGACTACGATATCCATATTTTGACTACAACATCCTAGAAGTTCATAATTTCCTCGTTTTCACATTTTTTCTGGAAATGTCCGGATTCCGGATTCCGTATTCCGCTTCCCGAATGTGTTATTCCGGAAATATAATTTTTGTGAGGTCTCTAGGGAGGCACTTCATTTAGAGGGACCATGTAATGMATGTTTGACGGTTACTTGGATATGATGTACTTAAAAAGCCCTACAAAATGACGCTATTTAGATTACTGTAACTTGCCTATGAAGAAAATGACAAGGCAGAAACCTGCTGAGCTACGCGGTTGATCTTTTTAACTGTATTACAGCCCTGTAACGTTGCTCATAGGCAAGATACAGTATATCAAATGGTATCATTGTGTATTCTTTGAAATTTTCTATCATATCCAGTTTATTTGGTCCAAAACTATTCATCTTAAAAGAAACTATGACAGTGTCCGTTTTGGATCCGTTTTTGGGCCGTTTTACATTTAAACGGTTAAAAAAATCATGAGAAGTAGTAAACCTAGATGAGGTTCTCAAGCTGCAACATTTTAAGAATCCTTTTCTCTCTCTCTCCCTGTCTCTCACTCACTCACTCATAATTCCTATCAACCATACCTACCCAATTTATGAGCACAGCTTTACAGTTCAACGTGTTGTAATTATTTCTGTCGCCCCAATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATGCAT</site>
                <isoschizomers>
                    <enzyme>BfrBI</enzyme>
                    <enzyme>EcoT22I</enzyme>
                    <enzyme>Mph1103I</enzyme>
                    <enzyme>NsiI</enzyme>
                    <enzyme>Ppu10I</enzyme>
                    <enzyme>Zsp2I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>491 324 176 9</canonical_bands>
                <polymorphic_bands>491 333 176</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>499 362 139</canonical_bands>
                <polymorphic_bands>861 139</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTCATAATTTCCTCGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TAGGTTTACTACTTCTCATGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>490</pcr_amplicon_size>
		<canonical_amplicon>AAGTTCATAATTTCCTCGTTTTCACATTTTTTCTGGAAATGTCCGGATTCCGGATTCCGTATTCCGCTTCCCGAATGTGTTATTCCGGAAATATAATTTTTGTGAGGTCTCTAGGGAGGCACTTCATTTAGAGGGACCATGTAATGCATGTTTGACGGTTACTTGGATATGATGTACTTAAAAAGCCCTACAAAATGACGCTATTTAGATTACTGTAACTTGCCTATGAAGAAAATGACAAGGCAGAAACCTGCTGAGCTACGCGGTTGATCTTTTTAACTGTATTACAGCCCTGTAACGTTGCTCATAGGCAAGATACAGTATATCAAATGGTATCATTGTGTATTCTTTGAAATTTTCTATCATATCCAGTTTATTTGGTCCAAAACTATTCATCTTAAAAGAAACTATGACAGTGTCCGTTTTGGATCCGTTTTTGGGCCGTTTTACATTTAAACGGTTAAAAAAATCATGAGAAGTAGTAAACCTA</canonical_amplicon>
		<polymorphic_amplicon>AAGTTCATAATTTCCTCGTTTTCACATTTTTTCTGGAAATGTCCGGATTCCGGATTCCGTATTCCGCTTCCCGAATGTGTTATTCCGGAAATATAATTTTTGTGAGGTCTCTAGGGAGGCACTTCATTTAGAGGGACCATGTAATGMATGTTTGACGGTTACTTGGATATGATGTACTTAAAAAGCCCTACAAAATGACGCTATTTAGATTACTGTAACTTGCCTATGAAGAAAATGACAAGGCAGAAACCTGCTGAGCTACGCGGTTGATCTTTTTAACTGTATTACAGCCCTGTAACGTTGCTCATAGGCAAGATACAGTATATCAAATGGTATCATTGTGTATTCTTTGAAATTTTCTATCATATCCAGTTTATTTGGTCCAAAACTATTCATCTTAAAAGAAACTATGACAGTGTCCGTTTTGGATCCGTTTTTGGGCCGTTTTACATTTAAACGGTTAAAAAAATCATGAGAAGTAGTAAACCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3568</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>204642</contig_pos>
        <strand>+</strand>
        <context>ACCATGTAAT[A/G]MATGTTTGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTTGTGAGGTCTCTAGGGAGGCACTTCATTTAGAGGGACCATGTAAT</left_flank>
        <right_flank>CATGTTTGACGGTTACTTGGATATGATGTACTTAAAAAGCCCTACAAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGTTTTTCTTCAGTTTTACTGCCCCGAAGTGAGGAGGATTTAGAACGGAAGTACTTTCAGACTAGTTCGGTTCGCTAGATTAATTTAATGTTTTTTTGGAGGGTTTAGTTCACTTGGTTTCAGTGTGAGGATTCCAATTTCAAGGAAGTCTTTCTCAGTTACATAGGTTTGAAAAGAGGTAGTACTGTAGCTAAGATTCAAAATTCTAAGATCCTAACTATCGAGCGCTAAAACGCGTACTCTTGAGAAGTTTTCCTTCGGATCATCACTCAAATTTTGAAAGTTACTTTAAAATTACATCTCGGTAAGATTCCAATGACTACGATATCCATATTTTGACTACAACATCCTAGAAGTTCATAATTTCCTCGTTTTCACATTTTTTCTGGAAATGTCCGGATTCCGGATTCCGTATTCCGCTTCCCGAATGTGTTATTCCGGAAATATAATTTTTGTGAGGTCTCTAGGGAGGCACTTCATTTAGAGGGACCATGTAATGCATGTTTGACGGTTACTTGGATATGATGTACTTAAAAAGCCCTACAAAATGACGCTATTTAGATTACTGTAACTTGCCTATGAAGAAAATGACAAGGCAGAAACCTGCTGAGCTACGCGGTTGATCTTTTTAACTGTATTACAGCCCTGTAACGTTGCTCATAGGCAAGATACAGTATATCAAATGGTATCATTGTGTATTCTTTGAAATTTTCTATCATATCCAGTTTATTTGGTCCAAAACTATTCATCTTAAAAGAAACTATGACAGTGTCCGTTTTGGATCCGTTTTTGGGCCGTTTTACATTTAAACGGTTAAAAAAATCATGAGAAGTAGTAAACCTAGATGAGGTTCTCAAGCTGCAACATTTTAAGAATCCTTTTCTCTCTCTCTCCCTGTCTCTCACTCACTCACTCATAATTCCTATCAACCATACCTACCCAATTTATGAGCACAGCTTTACAGTTCAACGTGTTGTAATTATTTCTGTCGCCCCAATG</canonical>
            <polymorphic>ACGTTTTTCTTCAGTTTTACTGCCCCGAAGTGAGGAGGATTTAGAACGGAAGTACTTTCAGACTAGTTCGGTTCGCTAGATTAATTTAATGTTTTTTTGGAGGGTTTAGTTCACTTGGTTTCAGTGTGAGGATTCCAATTTCAAGGAAGTCTTTCTCAGTTACATAGGTTTGAAAAGAGGTAGTACTGTAGCTAAGATTCAAAATTCTAAGATCCTAACTATCGAGCGCTAAAACGCGTACTCTTGAGAAGTTTTCCTTCGGATCATCACTCAAATTTTGAAAGTTACTTTAAAATTACATCTCGGTAAGATTCCAATGACTACGATATCCATATTTTGACTACAACATCCTAGAAGTTCATAATTTCCTCGTTTTCACATTTTTTCTGGAAATGTCCGGATTCCGGATTCCGTATTCCGCTTCCCGAATGTGTTATTCCGGAAATATAATTTTTGTGAGGTCTCTAGGGAGGCACTTCATTTAGAGGGACCATGTAATRCATGTTTGACGGTTACTTGGATATGATGTACTTAAAAAGCCCTACAAAATGACGCTATTTAGATTACTGTAACTTGCCTATGAAGAAAATGACAAGGCAGAAACCTGCTGAGCTACGCGGTTGATCTTTTTAACTGTATTACAGCCCTGTAACGTTGCTCATAGGCAAGATACAGTATATCAAATGGTATCATTGTGTATTCTTTGAAATTTTCTATCATATCCAGTTTATTTGGTCCAAAACTATTCATCTTAAAAGAAACTATGACAGTGTCCGTTTTGGATCCGTTTTTGGGCCGTTTTACATTTAAACGGTTAAAAAAATCATGAGAAGTAGTAAACCTAGATGAGGTTCTCAAGCTGCAACATTTTAAGAATCCTTTTCTCTCTCTCTCCCTGTCTCTCACTCACTCACTCATAATTCCTATCAACCATACCTACCCAATTTATGAGCACAGCTTTACAGTTCAACGTGTTGTAATTATTTCTGTCGCCCCAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATGCAT</site>
                <isoschizomers>
                    <enzyme>BfrBI</enzyme>
                    <enzyme>EcoT22I</enzyme>
                    <enzyme>Mph1103I</enzyme>
                    <enzyme>NsiI</enzyme>
                    <enzyme>Ppu10I</enzyme>
                    <enzyme>Zsp2I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 362 138</canonical_bands>
                <polymorphic_bands>862 138</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTCATAATTTCCTCGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TAGGTTTACTACTTCTCATGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>490</pcr_amplicon_size>
		<canonical_amplicon>AAGTTCATAATTTCCTCGTTTTCACATTTTTTCTGGAAATGTCCGGATTCCGGATTCCGTATTCCGCTTCCCGAATGTGTTATTCCGGAAATATAATTTTTGTGAGGTCTCTAGGGAGGCACTTCATTTAGAGGGACCATGTAATGCATGTTTGACGGTTACTTGGATATGATGTACTTAAAAAGCCCTACAAAATGACGCTATTTAGATTACTGTAACTTGCCTATGAAGAAAATGACAAGGCAGAAACCTGCTGAGCTACGCGGTTGATCTTTTTAACTGTATTACAGCCCTGTAACGTTGCTCATAGGCAAGATACAGTATATCAAATGGTATCATTGTGTATTCTTTGAAATTTTCTATCATATCCAGTTTATTTGGTCCAAAACTATTCATCTTAAAAGAAACTATGACAGTGTCCGTTTTGGATCCGTTTTTGGGCCGTTTTACATTTAAACGGTTAAAAAAATCATGAGAAGTAGTAAACCTA</canonical_amplicon>
		<polymorphic_amplicon>AAGTTCATAATTTCCTCGTTTTCACATTTTTTCTGGAAATGTCCGGATTCCGGATTCCGTATTCCGCTTCCCGAATGTGTTATTCCGGAAATATAATTTTTGTGAGGTCTCTAGGGAGGCACTTCATTTAGAGGGACCATGTAATRCATGTTTGACGGTTACTTGGATATGATGTACTTAAAAAGCCCTACAAAATGACGCTATTTAGATTACTGTAACTTGCCTATGAAGAAAATGACAAGGCAGAAACCTGCTGAGCTACGCGGTTGATCTTTTTAACTGTATTACAGCCCTGTAACGTTGCTCATAGGCAAGATACAGTATATCAAATGGTATCATTGTGTATTCTTTGAAATTTTCTATCATATCCAGTTTATTTGGTCCAAAACTATTCATCTTAAAAGAAACTATGACAGTGTCCGTTTTGGATCCGTTTTTGGGCCGTTTTACATTTAAACGGTTAAAAAAATCATGAGAAGTAGTAAACCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3569</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>204770</contig_pos>
        <strand></strand>
        <context>cggttgatct[T/C]tttaactgta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTATGAAGAAAATGACAAGGCAGAAACCTGCTGAGCTACGCGGTTGATCT</left_flank>
        <right_flank>TTTAACTGTATTACAGCCCTGTAACGTTGCTCATAGGCAAGATACAGTAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGATTCCAATTTCAAGGAAGTCTTTCTCAGTTACATAGGTTTGAAAAGAGGTAGTACTGTAGCTAAGATTCAAAATTCTAAGATCCTAACTATCGAGCGCTAAAACGCGTACTCTTGAGAAGTTTTCCTTCGGATCATCACTCAAATTTTGAAAGTTACTTTAAAATTACATCTCGGTAAGATTCCAATGACTACGATATCCATATTTTGACTACAACATCCTAGAAGTTCATAATTTCCTCGTTTTCACATTTTTTCTGGAAATGTCCGGATTCCGGATTCCGTATTCCGCTTCCCGAATGTGTTATTCCGGAAATATAATTTTTGTGAGGTCTCTAGGGAGGCACTTCATTTAGAGGGACCATGTAATGCATGTTTGACGGTTACTTGGATATGATGTACTTAAAAAGCCCTACAAAATGACGCTATTTAGATTACTGTAACTTGCCTATGAAGAAAATGACAAGGCAGAAACCTGCTGAGCTACGCGGTTGATCTTTTTAACTGTATTACAGCCCTGTAACGTTGCTCATAGGCAAGATACAGTATATCAAATGGTATCATTGTGTATTCTTTGAAATTTTCTATCATATCCAGTTTATTTGGTCCAAAACTATTCATCTTAAAAGAAACTATGACAGTGTCCGTTTTGGATCCGTTTTTGGGCCGTTTTACATTTAAACGGTTAAAAAAATCATGAGAAGTAGTAAACCTAGATGAGGTTCTCAAGCTGCAACATTTTAAGAATCCTTTTCTCTCTCTCTCCCTGTCTCTCACTCACTCACTCATAATTCCTATCAACCATACCTACCCAATTTATGAGCACAGCTTTACAGTTCAACGTGTTGTAATTATTTCTGTCGCCCCAATGTCTCTCTCTCTTTCTCCATTCACTTTTGTGTTGAATCAGTGTGAAGTCTGACCTGCTAAGACCCCCACTCACAATCCCTCCCCGTTCGAAAGGTCAAGTGGGTACACATACAGCTTGATGTTTATTTG</canonical>
            <polymorphic>AGGATTCCAATTTCAAGGAAGTCTTTCTCAGTTACATAGGTTTGAAAAGAGGTAGTACTGTAGCTAAGATTCAAAATTCTAAGATCCTAACTATCGAGCGCTAAAACGCGTACTCTTGAGAAGTTTTCCTTCGGATCATCACTCAAATTTTGAAAGTTACTTTAAAATTACATCTCGGTAAGATTCCAATGACTACGATATCCATATTTTGACTACAACATCCTAGAAGTTCATAATTTCCTCGTTTTCACATTTTTTCTGGAAATGTCCGGATTCCGGATTCCGTATTCCGCTTCCCGAATGTGTTATTCCGGAAATATAATTTTTGTGAGGTCTCTAGGGAGGCACTTCATTTAGAGGGACCATGTAATGCATGTTTGACGGTTACTTGGATATGATGTACTTAAAAAGCCCTACAAAATGACGCTATTTAGATTACTGTAACTTGCCTATGAAGAAAATGACAAGGCAGAAACCTGCTGAGCTACGCGGTTGATCTYTTTAACTGTATTACAGCCCTGTAACGTTGCTCATAGGCAAGATACAGTATATCAAATGGTATCATTGTGTATTCTTTGAAATTTTCTATCATATCCAGTTTATTTGGTCCAAAACTATTCATCTTAAAAGAAACTATGACAGTGTCCGTTTTGGATCCGTTTTTGGGCCGTTTTACATTTAAACGGTTAAAAAAATCATGAGAAGTAGTAAACCTAGATGAGGTTCTCAAGCTGCAACATTTTAAGAATCCTTTTCTCTCTCTCTCCCTGTCTCTCACTCACTCACTCATAATTCCTATCAACCATACCTACCCAATTTATGAGCACAGCTTTACAGTTCAACGTGTTGTAATTATTTCTGTCGCCCCAATGTCTCTCTCTCTTTCTCCATTCACTTTTGTGTTGAATCAGTGTGAAGTCTGACCTGCTAAGACCCCCACTCACAATCCCTCCCCGTTCGAAAGGTCAAGTGGGTACACATACAGCTTGATGTTTATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCATTTAGAGGGACCATGT</pcr_primer_p1>
		<pcr_primer_p2>TAGGTTTACTACTTCTCATGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>369</pcr_amplicon_size>
		<canonical_amplicon>CTTCATTTAGAGGGACCATGTAATGCATGTTTGACGGTTACTTGGATATGATGTACTTAAAAAGCCCTACAAAATGACGCTATTTAGATTACTGTAACTTGCCTATGAAGAAAATGACAAGGCAGAAACCTGCTGAGCTACGCGGTTGATCTTTTTAACTGTATTACAGCCCTGTAACGTTGCTCATAGGCAAGATACAGTATATCAAATGGTATCATTGTGTATTCTTTGAAATTTTCTATCATATCCAGTTTATTTGGTCCAAAACTATTCATCTTAAAAGAAACTATGACAGTGTCCGTTTTGGATCCGTTTTTGGGCCGTTTTACATTTAAACGGTTAAAAAAATCATGAGAAGTAGTAAACCTA</canonical_amplicon>
		<polymorphic_amplicon>CTTCATTTAGAGGGACCATGTAATGCATGTTTGACGGTTACTTGGATATGATGTACTTAAAAAGCCCTACAAAATGACGCTATTTAGATTACTGTAACTTGCCTATGAAGAAAATGACAAGGCAGAAACCTGCTGAGCTACGCGGTTGATCTYTTTAACTGTATTACAGCCCTGTAACGTTGCTCATAGGCAAGATACAGTATATCAAATGGTATCATTGTGTATTCTTTGAAATTTTCTATCATATCCAGTTTATTTGGTCCAAAACTATTCATCTTAAAAGAAACTATGACAGTGTCCGTTTTGGATCCGTTTTTGGGCCGTTTTACATTTAAACGGTTAAAAAAATCATGAGAAGTAGTAAACCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3570</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>221357</contig_pos>
        <strand>+</strand>
        <context>AAAAGGAAAA[C/T]CAAAATGGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAACTATGCTTGTTCGGAACCTTTGAAAACAATAAAATGAAAAGGAAAA</left_flank>
        <right_flank>CAAAATGGCTGGGCGGCAAAGAGTGCTCAAGAGTCATTGTGAGGGGGAGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGTTGTTGGTGGTTGAAAAACCCAGGAAGCCTTTGGAGGCTCTGAAATGGCCAAGGATTTGAACTTTCGGCACCAGAAAATGTGTTGTAACACGTGAAACAGGCTCTGATAAGCCGATAGGTGACAATGGGGTGAAAATGAGGTGAAAGATAAGGCGAGAGGAGTACAATTTCTTCTGATAAAAATATGAAATATGGAGATGGAAATGTTGCAGACGAATGTGTCATGTGTGGGAGAAATCAGCAAAACTTTTTTGTTTCGGATGTGAATAAGCATGGAAATCGATAGAATCCAATGCGTTAGATGCAAAAGGGAGAAGCCAGAAAAAGGCGATGTCCCTTCTTTTCCCGACATGTATCGATCTATTCGTATTCATCACGGATAAACTGAGTGAAGTGCACTTTGAAGAGACATAGGGAACGAAATGGAAAACGGGCGGAACATTAAAAAACTATGCTTGTTCGGAACCTTTGAAAACAATAAAATGAAAAGGAAAACCAAAATGGCTGGGCGGCAAAGAGTGCTCAAGAGTCATTGTGAGGGGGAGAGCAGGAAGAAAAACAAAAAATGCTCGAAGTAGAGAGAAAGAGGAGGAGAGAAAAAGAGGAAAAAAGTTTTTGGAATATAAAGTCAGTCTAAAGGTATCTTTTCCTGGTATTTATTTACAAGGAAATTTTCAAAAACATGTTGTTGATGACCTTGCCATCGAATTAGTCAATTATCGGACAAACATCAGTCTTTGGGTTTTGATCAACATATTTCTATTGTCTTGACTGTCATGAGCTCCTTGTATTGCATGAAATCGTATTTTTAAACATATTTCTAGTATCGAAAAACAGATGTCTGAATCAAATCGGTTTGAAAGACGGCACAGCTGTTGGCTCAAGCACGAGTGCGGAACAAAATAGATGAAGACAAAAACCCAGAAGTAAATATCAAACAAGTCAATTGTGATCTTTGTGCTGACAAGAAATTTAAAATTTCCACTATTAATTCGG</canonical>
            <polymorphic>GAAGTTGTTGGTGGTTGAAAAACCCAGGAAGCCTTTGGAGGCTCTGAAATGGCCAAGGATTTGAACTTTCGGCACCAGAAAATGTGTTGTAACACGTGAAACAGGCTCTGATAAGCCGATAGGTGACAATGGGGTGAAAATGAGGTGAAAGATAAGGCGAGAGGAGTACAATTTCTTCTGATAAAAATATGAAATATGGAGATGGAAATGTTGCAGACGAATGTGTCATGTGTGGGAGAAATCAGCAAAACTTTTTTGTTTCGGATGTGAATAAGCATGGAAATCGATAGAATCCAATGCGTTAGATGCAAAAGGGAGAAGCCAGAAAAAGGCGATGTCCCTTCTTTTCCCGACATGTATCGATCTATTCGTATTCATCACGGATAAACTGAGTGAAGTGCACTTTGAAGAGACATAGGGAACGAAATGGAAAACGGGCGGAACATTAAAAAACTATGCTTGTTCGGAACCTTTGAAAACAATAAAATGAAAAGGAAAAYCAAAATGGCTGGGCGGCAAAGAGTGCTCAAGAGTCATTGTGAGGGGGAGAGCAGGAAGAAAAACAAAAAATGCTCGAAGTAGAGAGAAAGAGGAGGAGAGAAAAAGAGGAAAAAAGTTTTTGGAATATAAAGTCAGTCTAAAGGTATCTTTTCCTGGTATTTATTTACAAGGAAATTTTCAAAAACATGTTGTTGATGACCTTGCCATCGAATTAGTCAATTATCGGACAAACATCAGTCTTTGGGTTTTGATCAACATATTTCTATTGTCTTGACTGTCATGAGCTCCTTGTATTGCATGAAATCGTATTTTTAAACATATTTCTAGTATCGAAAAACAGATGTCTGAATCAAATCGGTTTGAAAGACGGCACAGCTGTTGGCTCAAGCACGAGTGCGGAACAAAATAGATGAAGACAAAAACCCAGAAGTAAATATCAAACAAGTCAATTGTGATCTTTGTGCTGACAAGAAATTTAAAATTTCCACTATTAATTCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGACATAGGGAACGAAATG</pcr_primer_p1>
		<pcr_primer_p2>ACCAGGAAAAGATACCTTTAGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAGACATAGGGAACGAAATGGAAAACGGGCGGAACATTAAAAAACTATGCTTGTTCGGAACCTTTGAAAACAATAAAATGAAAAGGAAAACCAAAATGGCTGGGCGGCAAAGAGTGCTCAAGAGTCATTGTGAGGGGGAGAGCAGGAAGAAAAACAAAAAATGCTCGAAGTAGAGAGAAAGAGGAGGAGAGAAAAAGAGGAAAAAAGTTTTTGGAATATAAAGTCAGTCTAAAGGTATCTTTTCCTGGT</canonical_amplicon>
		<polymorphic_amplicon>AGAGACATAGGGAACGAAATGGAAAACGGGCGGAACATTAAAAAACTATGCTTGTTCGGAACCTTTGAAAACAATAAAATGAAAAGGAAAAYCAAAATGGCTGGGCGGCAAAGAGTGCTCAAGAGTCATTGTGAGGGGGAGAGCAGGAAGAAAAACAAAAAATGCTCGAAGTAGAGAGAAAGAGGAGGAGAGAAAAAGAGGAAAAAAGTTTTTGGAATATAAAGTCAGTCTAAAGGTATCTTTTCCTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3571</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>224835</contig_pos>
        <strand>+</strand>
        <context>CCATATCTTC[A/G]GCATGCCATG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGGAGCTCCAAAATGAAGGAAATTGATCGAGTACAAGTCCATATCTTC</left_flank>
        <right_flank>GCATGCCATGGAAACGTTGTTTTGTACATTCCAAAATACAAATAGACAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGCTTTTCTCTTCTTTGCAACTCCTTTCTTATCGTCTTTGGGGCAATACCAATAATCCACCCAAGGGATGACTTCATGTTGTCGATACTGACTCATGAAGCAGTGCATATCAATTTTTACAGATGATTTATTGCATTCGCACAGAACTGCGTCTTTTCCATAGTCGATCCATCTGTCGGTAGCGAAATTCGTGGACTCGGCCAGGTTATAATCCAGATTGAATCCCATATGGTAGCCACGTGGAAAAGTTATTATGAACTCGTTGGGGCGTTGAATCATTGTAGCATACGGTATTTTGGCTGCTCGCAAGAGTTCCGGAGTCACTATGAATGTTTTATGACGAAGGAAAGCTTTGCACTTTGGTGCCTTTCCATCTTGATCCGAAAACTGTTGGCTCATGAATCGTTCAAACCGATCAGCATGCTCTGAACTGATGGAAAACCAGTATTTCGGAGCTCCAAAATGAAGGAAATTGATCGAGTACAAGTCCATATCTTCGGCATGCCATGGAAACGTTGTTTTGTACATTCCAAAATACAAATAGACAGTATTCACTCCTTTTATTTTGCTGTTCGCATCGTCTAGAACAGTTCCAAGATGGTTCATGTTGAACTCTTCTATTCCTTCATCATAGAAACTTCCTTCAGTATCAGCACCGTATATTGGTGTACCTTCAAGTATGTTTTCGAAATAATATTTCTCGATGTCGATTCCTGTGAGGTTTGGTTTTGGGTTCCGGAACTTTGCAGATTTTGCTAATTTCTCGAATTCCCCTGCCTTCATTTTACGATGTGACGTCTCGTTCCTTTTGAAATAAGTTCCTGGTTTTTCCGTAATTTCTATCGTTTCCCTCACAGGTCTGAAATGGAAAGTTATGATTAGCCAACTGAATAAACTGCTTACTGATTGATTTCGTAACTTTTAACGTCGGAGAAACAGCTTTTCGAAGGCCGTGGTGTCCATCCCTCTGGAGCCACAATTTTTGCAACACCGCCTTTC</canonical>
            <polymorphic>GCGCTTTTCTCTTCTTTGCAACTCCTTTCTTATCGTCTTTGGGGCAATACCAATAATCCACCCAAGGGATGACTTCATGTTGTCGATACTGACTCATGAAGCAGTGCATATCAATTTTTACAGATGATTTATTGCATTCGCACAGAACTGCGTCTTTTCCATAGTCGATCCATCTGTCGGTAGCGAAATTCGTGGACTCGGCCAGGTTATAATCCAGATTGAATCCCATATGGTAGCCACGTGGAAAAGTTATTATGAACTCGTTGGGGCGTTGAATCATTGTAGCATACGGTATTTTGGCTGCTCGCAAGAGTTCCGGAGTCACTATGAATGTTTTATGACGAAGGAAAGCTTTGCACTTTGGTGCCTTTCCATCTTGATCCGAAAACTGTTGGCTCATGAATCGTTCAAACCGATCAGCATGCTCTGAACTGATGGAAAACCAGTATTTCGGAGCTCCAAAATGAAGGAAATTGATCGAGTACAAGTCCATATCTTCRGCATGCCATGGAAACGTTGTTTTGTACATTCCAAAATACAAATAGACAGTATTCACTCCTTTTATTTTGCTGTTCGCATCGTCTAGAACAGTTCCAAGATGGTTCATGTTGAACTCTTCTATTCCTTCATCATAGAAACTTCCTTCAGTATCAGCACCGTATATTGGTGTACCTTCAAGTATGTTTTCGAAATAATATTTCTCGATGTCGATTCCTGTGAGGTTTGGTTTTGGGTTCCGGAACTTTGCAGATTTTGCTAATTTCTCGAATTCCCCTGCCTTCATTTTACGATGTGACGTCTCGTTCCTTTTGAAATAAGTTCCTGGTTTTTCCGTAATTTCTATCGTTTCCCTCACAGGTCTGAAATGGAAAGTTATGATTAGCCAACTGAATAAACTGCTTACTGATTGATTTCGTAACTTTTAACGTCGGAGAAACAGCTTTTCGAAGGCCGTGGTGTCCATCCCTCTGGAGCCACAATTTTTGCAACACCGCCTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTTTTATGACGAAGGAAAG</pcr_primer_p1>
		<pcr_primer_p2>CAGCAAAATAAAAGGAGTGAATA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AATGTTTTATGACGAAGGAAAGCTTTGCACTTTGGTGCCTTTCCATCTTGATCCGAAAACTGTTGGCTCATGAATCGTTCAAACCGATCAGCATGCTCTGAACTGATGGAAAACCAGTATTTCGGAGCTCCAAAATGAAGGAAATTGATCGAGTACAAGTCCATATCTTCGGCATGCCATGGAAACGTTGTTTTGTACATTCCAAAATACAAATAGACAGTATTCACTCCTTTTATTTTGCTG</canonical_amplicon>
		<polymorphic_amplicon>AATGTTTTATGACGAAGGAAAGCTTTGCACTTTGGTGCCTTTCCATCTTGATCCGAAAACTGTTGGCTCATGAATCGTTCAAACCGATCAGCATGCTCTGAACTGATGGAAAACCAGTATTTCGGAGCTCCAAAATGAAGGAAATTGATCGAGTACAAGTCCATATCTTCRGCATGCCATGGAAACGTTGTTTTGTACATTCCAAAATACAAATAGACAGTATTCACTCCTTTTATTTTGCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3572</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>249079</contig_pos>
        <strand>+</strand>
        <context>GAGTGTGCAC[C/G]ACAAAAAACG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCGTTGAAATGTAAACGTAAAGTGTGTAAATCAAGAGTGTGAGTGTGCAC</left_flank>
        <right_flank>ACAAAAAACGATTTATTCAAGAACCAAAAAAGATCAATCAGTTAGATGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGCTCCAGACTTCGGAAAATGGGCAAACTCAACTGAGAACTACGATTTTGTATATCTTATCGACATGTACTGTATCTCATTTCTTGTAAAAAATATCAAAAAGTGGTCAACTAACAAAATATTGTTGATATCATGATAAATATTTTATCTGTTAATCACATTTTGATATCTGTCACAGGAAATGAGATAAATGGGCTCAAAAAGTGTGTACGGTGAAATAAGCAGAAAGCCTACCGTATTCTCTTCCACTTCCTCCCATATCCGGTTCGTCTTAATTCTGTAGTCCTTGTCGTAACCACAAAACACAAATGATCCAGCGGCAACTAATAGAATCGAGAGCCGGAGCATTTTTTTTTTCTCGGCTGAAAGTGAGTCCTAGAGATGGTTCAGGTGGCTCTTAAAAAGCGTTGAACGTGCACAAATTCTAAGCGGATTAAGACAAGAAAAGGCGTTGAAATGTAAACGTAAAGTGTGTAAATCAAGAGTGTGAGTGTGCACCACAAAAAACGATTTATTCAAGAACCAAAAAAGATCAATCAGTTAGATGATCTGATAGTGTGACCTAGAAAAACAAGAATCAGATAAGAGAAGAAGGGTCCGTTTGTATCGATTCTGTTCCCATCAGCTCTGTTTGTTGTTGTTTTTTGTCCAATGTTGAGTGTTCTGTTGTCTTGGGGTTTTATCACAAGTGTTTATCAATTGGAAGAAGTGTGAAGTGTTAAGAAGAAGATAACCGATAGATCCTCTCTAAAATGAGATGGTGTAATACATTTTGCAATACTTGAAAAAAAATGTGTCAGATGATGAAGTGTAGTTTAAAAAGTGTTTTTGTAGTTTTTAGAAAAACATATTGCTTACTATTAAGAATCGTGAATAAGGAAAGTCGAGTATGCTCTTAATGAACTCAAGATTCAACTAGCGAAAAAGGATCTGAACCTACAGTATTTCCTCTAATAGAAGTCAACCCGAACCGTCCACTTTGAGCCTAATTATCTATGT</canonical>
            <polymorphic>GAGCTCCAGACTTCGGAAAATGGGCAAACTCAACTGAGAACTACGATTTTGTATATCTTATCGACATGTACTGTATCTCATTTCTTGTAAAAAATATCAAAAAGTGGTCAACTAACAAAATATTGTTGATATCATGATAAATATTTTATCTGTTAATCACATTTTGATATCTGTCACAGGAAATGAGATAAATGGGCTCAAAAAGTGTGTACGGTGAAATAAGCAGAAAGCCTACCGTATTCTCTTCCACTTCCTCCCATATCCGGTTCGTCTTAATTCTGTAGTCCTTGTCGTAACCACAAAACACAAATGATCCAGCGGCAACTAATAGAATCGAGAGCCGGAGCATTTTTTTTTTCTCGGCTGAAAGTGAGTCCTAGAGATGGTTCAGGTGGCTCTTAAAAAGCGTTGAACGTGCACAAATTCTAAGCGGATTAAGACAAGAAAAGGCGTTGAAATGTAAACGTAAAGTGTGTAAATCAAGAGTGTGAGTGTGCACSACAAAAAACGATTTATTCAAGAACCAAAAAAGATCAATCAGTTAGATGATCTGATAGTGTGACCTAGAAAAACAAGAATCAGATAAGAGAAGAAGGGTCCGTTTGTATCGATTCTGTTCCCATCAGCTCTGTTTGTTGTTGTTTTTTGTCCAATGTTGAGTGTTCTGTTGTCTTGGGGTTTTATCACAAGTGTTTATCAATTGGAAGAAGTGTGAAGTGTTAAGAAGAAGATAACCGATAGATCCTCTCTAAAATGAGATGGTGTAATACATTTTGCAATACTTGAAAAAAAATGTGTCAGATGATGAAGTGTAGTTTAAAAAGTGTTTTTGTAGTTTTTAGAAAAACATATTGCTTACTATTAAGAATCGTGAATAAGGAAAGTCGAGTATGCTCTTAATGAACTCAAGATTCAACTAGCGAAAAAGGATCTGAACCTACAGTATTTCCTCTAATAGAAGTCAACCCGAACCGTCCACTTTGAGCCTAATTATCTATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>106 105 101 66 58 54 53 50 47 45 33 33 31 24 23 22 22 20 17 15 14 13 7 7 6 5 4 3 2 2 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>106 105 101 66 61 54 53 50 47 45 33 33 31 24 23 22 22 20 17 15 14 13 7 7 6 5 4 2 2 2 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAAGCGGATTAAGACAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>AAGACAACAGAACACTCAACATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTAAGCGGATTAAGACAAGAAAAGGCGTTGAAATGTAAACGTAAAGTGTGTAAATCAAGAGTGTGAGTGTGCACCACAAAAAACGATTTATTCAAGAACCAAAAAAGATCAATCAGTTAGATGATCTGATAGTGTGACCTAGAAAAACAAGAATCAGATAAGAGAAGAAGGGTCCGTTTGTATCGATTCTGTTCCCATCAGCTCTGTTTGTTGTTGTTTTTTGTCCAATGTTGAGTGTTCTGTTGTCTT</canonical_amplicon>
		<polymorphic_amplicon>CTAAGCGGATTAAGACAAGAAAAGGCGTTGAAATGTAAACGTAAAGTGTGTAAATCAAGAGTGTGAGTGTGCACSACAAAAAACGATTTATTCAAGAACCAAAAAAGATCAATCAGTTAGATGATCTGATAGTGTGACCTAGAAAAACAAGAATCAGATAAGAGAAGAAGGGTCCGTTTGTATCGATTCTGTTCCCATCAGCTCTGTTTGTTGTTGTTTTTTGTCCAATGTTGAGTGTTCTGTTGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3573</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>314228</contig_pos>
        <strand>+</strand>
        <context>ACCAACTCAC[C/T]AATATCATCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACTCAAAGTTTGGGCGCCCTTCTATTAGAGGGTTTACAAACCAACTCAC</left_flank>
        <right_flank>AATATCATCTCTACTGCTCACGTATTGACAGTATTCCGTGCTTAAGAAGA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGGTCAAAGATTTTTGAGGAAACATAAACCAGAAACTTTTTGAATGAATCAGAAGGAAACAAAAATTAGAAATGCAAAAGTGATCGGAGGAAAAGAACGGAGGGATTGGATAAGAGACCAGATGGCTATTGGGAATCAAAAGGGGATGGGCATTACCTATTCATATGTATGCGAGAATAAGATTTGGGAAAAGAAAGTAAGCAAAACGAGAATATCTGGTTAGGAGAATTGAGAAGATTTGAATTTCGAGGAACGGGCAAAACTGGGAACATCAGAATCCAATACCGTGAATAGAAGAGCTCACACACTTCCAAATTTGAGCTCAATTATCTCAATTCCTTGCAAGATATCAAAAATGTGTCAACTAATAAAACAATGCAGATATCATATCAAACAATATACCAGTTGAAAACTTTTTCATAACTTTGACAGAAGCTGAGATAAATTGACTCAAAGTTTGGGCGCCCTTCTATTAGAGGGTTTACAAACCAACTCACTAATATCATCTCTACTGCTCACGTATTGACAGTATTCCGTGCTTAAGAAGAAGTCGTTGGTGTGATTCATTTTGTTAGGAAGACCTGAATGAGACAAAGTTAATAGAATCAGGCTAATTGGGGAGGACGAATTCTTTAGAATTCAAAAGTTGATATGGTCATTATGGAGGTGCGAGCGGCGGAAAAAAAAAACGAACGAGATAAGGGGCATTTTGACGGGACGAGAGGGAGGTTGTAACATCGTAAAAGCTGTTGTTTTTTGTTGTGCTAATTGGCATTCCAAGTCCACCAAGATAACGATCGGATCGGGAGAGATTAGAAGAAGAGGTGGGGAGAATCGGGATTCAAAAATTTTTAGTAGGAGGTGATGATCTCCATGAGGATAATCGAAACGTTTGAATTTTGATGGAGTACCATCAAATACAAATTTCAAATGTATAATTCACAAAATCCGAATTATGAACTACCATAATCGCTCTGATAGAAAGTCACTTAACTCGT</canonical>
            <polymorphic>GATGGTCAAAGATTTTTGAGGAAACATAAACCAGAAACTTTTTGAATGAATCAGAAGGAAACAAAAATTAGAAATGCAAAAGTGATCGGAGGAAAAGAACGGAGGGATTGGATAAGAGACCAGATGGCTATTGGGAATCAAAAGGGGATGGGCATTACCTATTCATATGTATGCGAGAATAAGATTTGGGAAAAGAAAGTAAGCAAAACGAGAATATCTGGTTAGGAGAATTGAGAAGATTTGAATTTCGAGGAACGGGCAAAACTGGGAACATCAGAATCCAATACCGTGAATAGAAGAGCTCACACACTTCCAAATTTGAGCTCAATTATCTCAATTCCTTGCAAGATATCAAAAATGTGTCAACTAATAAAACAATGCAGATATCATATCAAACAATATACCAGTTGAAAACTTTTTCATAACTTTGACAGAAGCTGAGATAAATTGACTCAAAGTTTGGGCGCCCTTCTATTAGAGGGTTTACAAACCAACTCACYAATATCATCTCTACTGCTCACGTATTGACAGTATTCCGTGCTTAAGAAGAAGTCGTTGGTGTGATTCATTTTGTTAGGAAGACCTGAATGAGACAAAGTTAATAGAATCAGGCTAATTGGGGAGGACGAATTCTTTAGAATTCAAAAGTTGATATGGTCATTATGGAGGTGCGAGCGGCGGAAAAAAAAAACGAACGAGATAAGGGGCATTTTGACGGGACGAGAGGGAGGTTGTAACATCGTAAAAGCTGTTGTTTTTTGTTGTGCTAATTGGCATTCCAAGTCCACCAAGATAACGATCGGATCGGGAGAGATTAGAAGAAGAGGTGGGGAGAATCGGGATTCAAAAATTTTTAGTAGGAGGTGATGATCTCCATGAGGATAATCGAAACGTTTGAATTTTGATGGAGTACCATCAAATACAAATTTCAAATGTATAATTCACAAAATCCGAATTATGAACTACCATAATCGCTCTGATAGAAAGTCACTTAACTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAACATCAGAATCCAATACC</pcr_primer_p1>
		<pcr_primer_p2>TCACACCAACGACTTCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>297</pcr_amplicon_size>
		<canonical_amplicon>GGAACATCAGAATCCAATACCGTGAATAGAAGAGCTCACACACTTCCAAATTTGAGCTCAATTATCTCAATTCCTTGCAAGATATCAAAAATGTGTCAACTAATAAAACAATGCAGATATCATATCAAACAATATACCAGTTGAAAACTTTTTCATAACTTTGACAGAAGCTGAGATAAATTGACTCAAAGTTTGGGCGCCCTTCTATTAGAGGGTTTACAAACCAACTCACTAATATCATCTCTACTGCTCACGTATTGACAGTATTCCGTGCTTAAGAAGAAGTCGTTGGTGTGA</canonical_amplicon>
		<polymorphic_amplicon>GGAACATCAGAATCCAATACCGTGAATAGAAGAGCTCACACACTTCCAAATTTGAGCTCAATTATCTCAATTCCTTGCAAGATATCAAAAATGTGTCAACTAATAAAACAATGCAGATATCATATCAAACAATATACCAGTTGAAAACTTTTTCATAACTTTGACAGAAGCTGAGATAAATTGACTCAAAGTTTGGGCGCCCTTCTATTAGAGGGTTTACAAACCAACTCACYAATATCATCTCTACTGCTCACGTATTGACAGTATTCCGTGCTTAAGAAGAAGTCGTTGGTGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3574</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>314272</contig_pos>
        <strand>+</strand>
        <context>TTCCGTGCTT[A/G]AGAAGAAGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTCACTAATATCATCTCTACTGCTCACGTATTGACAGTATTCCGTGCTT</left_flank>
        <right_flank>AGAAGAAGTCGTTGGTGTGATTCATTTTGTTAGGAAGACCTGAATGAGAC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGAATCAGAAGGAAACAAAAATTAGAAATGCAAAAGTGATCGGAGGAAAAGAACGGAGGGATTGGATAAGAGACCAGATGGCTATTGGGAATCAAAAGGGGATGGGCATTACCTATTCATATGTATGCGAGAATAAGATTTGGGAAAAGAAAGTAAGCAAAACGAGAATATCTGGTTAGGAGAATTGAGAAGATTTGAATTTCGAGGAACGGGCAAAACTGGGAACATCAGAATCCAATACCGTGAATAGAAGAGCTCACACACTTCCAAATTTGAGCTCAATTATCTCAATTCCTTGCAAGATATCAAAAATGTGTCAACTAATAAAACAATGCAGATATCATATCAAACAATATACCAGTTGAAAACTTTTTCATAACTTTGACAGAAGCTGAGATAAATTGACTCAAAGTTTGGGCGCCCTTCTATTAGAGGGTTTACAAACCAACTCACTAATATCATCTCTACTGCTCACGTATTGACAGTATTCCGTGCTTAAGAAGAAGTCGTTGGTGTGATTCATTTTGTTAGGAAGACCTGAATGAGACAAAGTTAATAGAATCAGGCTAATTGGGGAGGACGAATTCTTTAGAATTCAAAAGTTGATATGGTCATTATGGAGGTGCGAGCGGCGGAAAAAAAAAACGAACGAGATAAGGGGCATTTTGACGGGACGAGAGGGAGGTTGTAACATCGTAAAAGCTGTTGTTTTTTGTTGTGCTAATTGGCATTCCAAGTCCACCAAGATAACGATCGGATCGGGAGAGATTAGAAGAAGAGGTGGGGAGAATCGGGATTCAAAAATTTTTAGTAGGAGGTGATGATCTCCATGAGGATAATCGAAACGTTTGAATTTTGATGGAGTACCATCAAATACAAATTTCAAATGTATAATTCACAAAATCCGAATTATGAACTACCATAATCGCTCTGATAGAAAGTCACTTAACTCGTCAACTTAAAGCACATATATCTCGGTCTCTGTGAAAGATATCAAG</canonical>
            <polymorphic>AATGAATCAGAAGGAAACAAAAATTAGAAATGCAAAAGTGATCGGAGGAAAAGAACGGAGGGATTGGATAAGAGACCAGATGGCTATTGGGAATCAAAAGGGGATGGGCATTACCTATTCATATGTATGCGAGAATAAGATTTGGGAAAAGAAAGTAAGCAAAACGAGAATATCTGGTTAGGAGAATTGAGAAGATTTGAATTTCGAGGAACGGGCAAAACTGGGAACATCAGAATCCAATACCGTGAATAGAAGAGCTCACACACTTCCAAATTTGAGCTCAATTATCTCAATTCCTTGCAAGATATCAAAAATGTGTCAACTAATAAAACAATGCAGATATCATATCAAACAATATACCAGTTGAAAACTTTTTCATAACTTTGACAGAAGCTGAGATAAATTGACTCAAAGTTTGGGCGCCCTTCTATTAGAGGGTTTACAAACCAACTCACTAATATCATCTCTACTGCTCACGTATTGACAGTATTCCGTGCTTRAGAAGAAGTCGTTGGTGTGATTCATTTTGTTAGGAAGACCTGAATGAGACAAAGTTAATAGAATCAGGCTAATTGGGGAGGACGAATTCTTTAGAATTCAAAAGTTGATATGGTCATTATGGAGGTGCGAGCGGCGGAAAAAAAAAACGAACGAGATAAGGGGCATTTTGACGGGACGAGAGGGAGGTTGTAACATCGTAAAAGCTGTTGTTTTTTGTTGTGCTAATTGGCATTCCAAGTCCACCAAGATAACGATCGGATCGGGAGAGATTAGAAGAAGAGGTGGGGAGAATCGGGATTCAAAAATTTTTAGTAGGAGGTGATGATCTCCATGAGGATAATCGAAACGTTTGAATTTTGATGGAGTACCATCAAATACAAATTTCAAATGTATAATTCACAAAATCCGAATTATGAACTACCATAATCGCTCTGATAGAAAGTCACTTAACTCGTCAACTTAAAGCACATATATCTCGGTCTCTGTGAAAGATATCAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTTAAG</site>
                <isoschizomers>
                    <enzyme>AflII</enzyme>
                    <enzyme>BfrI</enzyme>
                    <enzyme>BspTI</enzyme>
                    <enzyme>Bst98I</enzyme>
                    <enzyme>MspCI</enzyme>
                    <enzyme>Vha464I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>498 393 57 39 13</canonical_bands>
                <polymorphic_bands>555 393 39 13</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAACATCAGAATCCAATACC</pcr_primer_p1>
		<pcr_primer_p2>ACTTTGTCTCATTCAGGTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>332</pcr_amplicon_size>
		<canonical_amplicon>GGAACATCAGAATCCAATACCGTGAATAGAAGAGCTCACACACTTCCAAATTTGAGCTCAATTATCTCAATTCCTTGCAAGATATCAAAAATGTGTCAACTAATAAAACAATGCAGATATCATATCAAACAATATACCAGTTGAAAACTTTTTCATAACTTTGACAGAAGCTGAGATAAATTGACTCAAAGTTTGGGCGCCCTTCTATTAGAGGGTTTACAAACCAACTCACTAATATCATCTCTACTGCTCACGTATTGACAGTATTCCGTGCTTAAGAAGAAGTCGTTGGTGTGATTCATTTTGTTAGGAAGACCTGAATGAGACAAAGT</canonical_amplicon>
		<polymorphic_amplicon>GGAACATCAGAATCCAATACCGTGAATAGAAGAGCTCACACACTTCCAAATTTGAGCTCAATTATCTCAATTCCTTGCAAGATATCAAAAATGTGTCAACTAATAAAACAATGCAGATATCATATCAAACAATATACCAGTTGAAAACTTTTTCATAACTTTGACAGAAGCTGAGATAAATTGACTCAAAGTTTGGGCGCCCTTCTATTAGAGGGTTTACAAACCAACTCACTAATATCATCTCTACTGCTCACGTATTGACAGTATTCCGTGCTTRAGAAGAAGTCGTTGGTGTGATTCATTTTGTTAGGAAGACCTGAATGAGACAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3575</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>316592</contig_pos>
        <strand>+</strand>
        <context>TTTTAGTAGG[G/T]AGAACTAGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTTTTCGCGAAAAAAGTCAATTTTAAAATTTCAAATGATTTTTAGTAGG</left_flank>
        <right_flank>AGAACTAGACTACGAATTACCGTAAAAGCCGTAGAGCCCCCACACTATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCCAATCGAGGATGTATGGAGAGAAGGACAAAATGACAAAAAAAAGTTGGTAGTTGGCCATTTTGAAGAAAGAAGGGGCAAGAAGAAAAGTTGATGGGAATTTAAAAGCAGATAAGAAATGGAAAAGAAAGTGTTCTGCCAATAAAATGTTTGTTGGTGGTGGATGGTGGTGGATGGTGGTGGATGGTGTTGGGTGGAAAATGGGTGTATGCTTTTGTTTTGTGTTCGTGTTTCTAGATTGAGTTAAGATAAGAAAAATTTGGGAGAGGAGAGACAGGAAATGACGATTAATATTGAGTTAGAGAGGAGGAGGACAGAGAAAGAAGACCAGGAGCAGATGGAGAAAATGAAGAAGGAGCACACGCCATAAATATATGTCAAAAGAGTCAAATTATTGATGAGAAGACCAGAGGGAATCATATTACATGACCATTAAATTTTAAAATTTGTTTTCGCGAAAAAAGTCAATTTTAAAATTTCAAATGATTTTTAGTAGGTAGAACTAGACTACGAATTACCGTAAAAGCCGTAGAGCCCCCACACTATCAAACTTGAGCCCAATTATCTCGGTTCCTATACAAGATATCAAAAATGTGACAACTGATAAAATGTTTCTGGTATTATGATAAACAAATTATCAGTTGACAACTTTTTGATATCATTTGACAGGAACGGAGGTAAATTGGATCAAAATTAAAAAGTTTGGATGCTCTTCTAGAGGTATTACGGTAGCTGAACTTCATAAAAGTGAGTTTTTTAGGTTGTCAAACGGGCTCGGGTAATAGGTCAATCGAATTCCAAACTCTCCAGTTTTGTAATTTTGCACTTTTTTAAATTTGTTTTTTTTAGAATTTACAATGTTAGAATTTTCTAACATTTGGAAATTTTCGAAAATTTACATTTTCTGAATTCAAAACTTTTCGGAATTTTTGAATTAAAAAAAGCGTTTACACAAACTTCCCAAGTTTTTAAAAGTTCGAAATTCCAGATTCCTGAAT</canonical>
            <polymorphic>AGTCCAATCGAGGATGTATGGAGAGAAGGACAAAATGACAAAAAAAAGTTGGTAGTTGGCCATTTTGAAGAAAGAAGGGGCAAGAAGAAAAGTTGATGGGAATTTAAAAGCAGATAAGAAATGGAAAAGAAAGTGTTCTGCCAATAAAATGTTTGTTGGTGGTGGATGGTGGTGGATGGTGGTGGATGGTGTTGGGTGGAAAATGGGTGTATGCTTTTGTTTTGTGTTCGTGTTTCTAGATTGAGTTAAGATAAGAAAAATTTGGGAGAGGAGAGACAGGAAATGACGATTAATATTGAGTTAGAGAGGAGGAGGACAGAGAAAGAAGACCAGGAGCAGATGGAGAAAATGAAGAAGGAGCACACGCCATAAATATATGTCAAAAGAGTCAAATTATTGATGAGAAGACCAGAGGGAATCATATTACATGACCATTAAATTTTAAAATTTGTTTTCGCGAAAAAAGTCAATTTTAAAATTTCAAATGATTTTTAGTAGGKAGAACTAGACTACGAATTACCGTAAAAGCCGTAGAGCCCCCACACTATCAAACTTGAGCCCAATTATCTCGGTTCCTATACAAGATATCAAAAATGTGACAACTGATAAAATGTTTCTGGTATTATGATAAACAAATTATCAGTTGACAACTTTTTGATATCATTTGACAGGAACGGAGGTAAATTGGATCAAAATTAAAAAGTTTGGATGCTCTTCTAGAGGTATTACGGTAGCTGAACTTCATAAAAGTGAGTTTTTTAGGTTGTCAAACGGGCTCGGGTAATAGGTCAATCGAATTCCAAACTCTCCAGTTTTGTAATTTTGCACTTTTTTAAATTTGTTTTTTTTAGAATTTACAATGTTAGAATTTTCTAACATTTGGAAATTTTCGAAAATTTACATTTTCTGAATTCAAAACTTTTCGGAATTTTTGAATTAAAAAAAGCGTTTACACAAACTTCCCAAGTTTTTAAAAGTTCGAAATTCCAGATTCCTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGGAATCATATTACATGACCA</pcr_primer_p1>
		<pcr_primer_p2>GCAAAATTACAAAACTGGAGA</pcr_primer_p2>
		<pcr_amplicon_size>414</pcr_amplicon_size>
		<canonical_amplicon>AGGGAATCATATTACATGACCATTAAATTTTAAAATTTGTTTTCGCGAAAAAAGTCAATTTTAAAATTTCAAATGATTTTTAGTAGGTAGAACTAGACTACGAATTACCGTAAAAGCCGTAGAGCCCCCACACTATCAAACTTGAGCCCAATTATCTCGGTTCCTATACAAGATATCAAAAATGTGACAACTGATAAAATGTTTCTGGTATTATGATAAACAAATTATCAGTTGACAACTTTTTGATATCATTTGACAGGAACGGAGGTAAATTGGATCAAAATTAAAAAGTTTGGATGCTCTTCTAGAGGTATTACGGTAGCTGAACTTCATAAAAGTGAGTTTTTTAGGTTGTCAAACGGGCTCGGGTAATAGGTCAATCGAATTCCAAACTCTCCAGTTTTGTAATTTTGC</canonical_amplicon>
		<polymorphic_amplicon>AGGGAATCATATTACATGACCATTAAATTTTAAAATTTGTTTTCGCGAAAAAAGTCAATTTTAAAATTTCAAATGATTTTTAGTAGGKAGAACTAGACTACGAATTACCGTAAAAGCCGTAGAGCCCCCACACTATCAAACTTGAGCCCAATTATCTCGGTTCCTATACAAGATATCAAAAATGTGACAACTGATAAAATGTTTCTGGTATTATGATAAACAAATTATCAGTTGACAACTTTTTGATATCATTTGACAGGAACGGAGGTAAATTGGATCAAAATTAAAAAGTTTGGATGCTCTTCTAGAGGTATTACGGTAGCTGAACTTCATAAAAGTGAGTTTTTTAGGTTGTCAAACGGGCTCGGGTAATAGGTCAATCGAATTCCAAACTCTCCAGTTTTGTAATTTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3576</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>360747</contig_pos>
        <strand>+</strand>
        <context>CGATGAGACT[A/G]CTAATGGGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCATCCCACAGTTTCACGGAAGAATCCCATCCACCAGAGACGATGAGACT</left_flank>
        <right_flank>CTAATGGGGTTGAACTCCAGACAGCGAACTGCCAATGCATGCGATCCGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGGATGATTCTCTTTCTGTTGAATGGGTCCCAAATGTTCACGATTCCATCGGAGCCTCCAGTCGCAAAGCTTCCGAATTTCGGATGGAAAGCTACAGCGTGAACAGGATGAATCAGTTCGGTGCCATCCGCATCTTTCTCGCGGTGACACTTGAAAGCATACTTTCTCTTCACTTGGTCGCTGTTCTGCTCCACGTACTCAACAGCAACACGGCCTTCGATCGAGGAGACAACGAACGCTTCTCCAGTTGGGAAGAATTGAACAGATCGTGTCTGATATTTGAGCGGACTGTCACGAACTTGCACTGGCTCTCTGAGTTTGCGACTATCGAACATGTAGATTTTCCGATCTTTTGTTCCAACAAGAACCATGTGCTTGAGAACATCCATGGCGTAAACACTGCTGGACACATTCACGGAATCAACTGCACCATTTCCATAGCTTCGTGCATCCCACAGTTTCACGGAAGAATCCCATCCACCAGAGACGATGAGACTGCTAATGGGGTTGAACTCCAGACAGCGAACTGCCAATGCATGCGATCCGAGCTGTGTTCCATTTCCAGTCTCGATGTCGGCAAGTTTCACATTGTGATCCACACCTCCGAAGGCGACTTTGTTGTAACCCTAAAACGATACACATGTGAAATGCGTTATTTTATCGAATAAAACTTACAGCAAATGTACATGTCAGTAGAGGCTTTCCGTGTGTGAAAACGAGTTTTTCAGAAAACTCTCCGAGCTTTCCTACTTCGTATACGCGGCATGTTCCATCCCAACCTGACGCCACGAGCAATTTTGATCCTCCGCCGTCCTTTTGAAACTAAAAACGAGACGTATCAGACAGACATTGAATGCGAAACGATACCTGGACTTTAGAAATTTGAACAAATGGTGGGAACGGCACCCGAAACTCGTTTGGAGCAGCGACAATTGTGGCTGCTTGGTATGACATCTGCAAGAAAAATTATTTACTGCAACTCTAGGTTATAAATAAAT</canonical>
            <polymorphic>ATTGGATGATTCTCTTTCTGTTGAATGGGTCCCAAATGTTCACGATTCCATCGGAGCCTCCAGTCGCAAAGCTTCCGAATTTCGGATGGAAAGCTACAGCGTGAACAGGATGAATCAGTTCGGTGCCATCCGCATCTTTCTCGCGGTGACACTTGAAAGCATACTTTCTCTTCACTTGGTCGCTGTTCTGCTCCACGTACTCAACAGCAACACGGCCTTCGATCGAGGAGACAACGAACGCTTCTCCAGTTGGGAAGAATTGAACAGATCGTGTCTGATATTTGAGCGGACTGTCACGAACTTGCACTGGCTCTCTGAGTTTGCGACTATCGAACATGTAGATTTTCCGATCTTTTGTTCCAACAAGAACCATGTGCTTGAGAACATCCATGGCGTAAACACTGCTGGACACATTCACGGAATCAACTGCACCATTTCCATAGCTTCGTGCATCCCACAGTTTCACGGAAGAATCCCATCCACCAGAGACGATGAGACTRCTAATGGGGTTGAACTCCAGACAGCGAACTGCCAATGCATGCGATCCGAGCTGTGTTCCATTTCCAGTCTCGATGTCGGCAAGTTTCACATTGTGATCCACACCTCCGAAGGCGACTTTGTTGTAACCCTAAAACGATACACATGTGAAATGCGTTATTTTATCGAATAAAACTTACAGCAAATGTACATGTCAGTAGAGGCTTTCCGTGTGTGAAAACGAGTTTTTCAGAAAACTCTCCGAGCTTTCCTACTTCGTATACGCGGCATGTTCCATCCCAACCTGACGCCACGAGCAATTTTGATCCTCCGCCGTCCTTTTGAAACTAAAAACGAGACGTATCAGACAGACATTGAATGCGAAACGATACCTGGACTTTAGAAATTTGAACAAATGGTGGGAACGGCACCCGAAACTCGTTTGGAGCAGCGACAATTGTGGCTGCTTGGTATGACATCTGCAAGAAAAATTATTTACTGCAACTCTAGGTTATAAATAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAAACACTGCTGGACACATT</pcr_primer_p1>
		<pcr_primer_p2>CATGTGTATCGTTTTAGGGTTAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTAAACACTGCTGGACACATTCACGGAATCAACTGCACCATTTCCATAGCTTCGTGCATCCCACAGTTTCACGGAAGAATCCCATCCACCAGAGACGATGAGACTGCTAATGGGGTTGAACTCCAGACAGCGAACTGCCAATGCATGCGATCCGAGCTGTGTTCCATTTCCAGTCTCGATGTCGGCAAGTTTCACATTGTGATCCACACCTCCGAAGGCGACTTTGTTGTAACCCTAAAACGATACACATG</canonical_amplicon>
		<polymorphic_amplicon>GTAAACACTGCTGGACACATTCACGGAATCAACTGCACCATTTCCATAGCTTCGTGCATCCCACAGTTTCACGGAAGAATCCCATCCACCAGAGACGATGAGACTRCTAATGGGGTTGAACTCCAGACAGCGAACTGCCAATGCATGCGATCCGAGCTGTGTTCCATTTCCAGTCTCGATGTCGGCAAGTTTCACATTGTGATCCACACCTCCGAAGGCGACTTTGTTGTAACCCTAAAACGATACACATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3577</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>363268</contig_pos>
        <strand></strand>
        <context>ACTTTTCAAA[T/A]TTTTTTTGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGGAGAAATACGCAAAGTTGTACCGAAAAAAGTAGAGGGCACTTTTCAAA</left_flank>
        <right_flank>TTTTTTTGTATAGGGTAGATTGTTTTTTGTTATTTTTCTGTTTTGTTTTC</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTTTGGACAAAGCACCCATGTGGTTGTCCCCACGTCTTCTCACAATCCGACGCAAGAAAATGAAGAAGCATAAGAGACGAAGGCGATATGATCGAGACTTTTTCAAATACCAAAAATATCATAGAGAGAAGAAACTGAAGTCAGAAAGAGAGTTCCAGAAGAGAATGAAGTCTTTGCTAACGGAGTTAGAAGCATTCGATCCAGAGAAATATGTGAAAGACACCATCAAAATGGCTAATAAGGAATGGCAGGATGAGTTGGCGCCGACTGGAAGAAAACTTTATCCACATTGGAGCAGATTCATGAGTTTGGAGCAATTGTATGGATTACCAAAGAGCGAGTACATTGACAAGAGGTAAGCTTTGGCACTTCTTCACTATGTAAATGAACGTTTTTTTAGATCTGGACTCCCAACACCGGAAGAAGCCGAGCAAATCAAGGCATTGAAGGAGAAATACGCAAAGTTGTACCGAAAAAAGTAGAGGGCACTTTTCAAATTTTTTTTGTATAGGGTAGATTGTTTTTTGTTATTTTTCTGTTTTGTTTTCGAAAAAAAAGTTTGAAATTATTTGAAAATATTGGACTATTCTATCTAAAGAGGAGAATACAGATCACATTTGCATCATANNNNNNNNNNATGAGTTCTTATCCATACTGGTTTTCAGATTGCTTTCCAGATTTTTCACTTATTTTCAGATTTTGATTTTCAGGAATTGTTAAAAATAAATAACGTAGAACGTAGTTATCCGGATAAAAAAATTGAAATGAAATTTCAGAAATGTGGCTTCGAATGAATGCTCTGGAATATATGAAAACTGCCTTTCATAGAAGATTGTTCATGAAAACTATAGGAAAGTTGCATTGAAGTTTTCTTTTGAATTCCTGTCTGATCATCAATCTTTTTCTCTTTTTTTAACAAACACACATTTTTTCCAATCGATTTTCATGGAAAAATAATAATAAATTTATTTGAATACCGTTCAACCTGTAACAGAAGG</canonical>
            <polymorphic>AACTTTGGACAAAGCACCCATGTGGTTGTCCCCACGTCTTCTCACAATCCGACGCAAGAAAATGAAGAAGCATAAGAGACGAAGGCGATATGATCGAGACTTTTTCAAATACCAAAAATATCATAGAGAGAAGAAACTGAAGTCAGAAAGAGAGTTCCAGAAGAGAATGAAGTCTTTGCTAACGGAGTTAGAAGCATTCGATCCAGAGAAATATGTGAAAGACACCATCAAAATGGCTAATAAGGAATGGCAGGATGAGTTGGCGCCGACTGGAAGAAAACTTTATCCACATTGGAGCAGATTCATGAGTTTGGAGCAATTGTATGGATTACCAAAGAGCGAGTACATTGACAAGAGGTAAGCTTTGGCACTTCTTCACTATGTAAATGAACGTTTTTTTAGATCTGGACTCCCAACACCGGAAGAAGCCGAGCAAATCAAGGCATTGAAGGAGAAATACGCAAAGTTGTACCGAAAAAAGTAGAGGGCACTTTTCAAAWTTTTTTTGTATAGGGTAGATTGTTTTTTGTTATTTTTCTGTTTTGTTTTCGAAAAAAAAGTTTGAAATTATTTGAAAATATTGGACTATTCTATCTAAAGAGGAGAATACAGATCACATTTGCATCATANNNNNNNNNNATGAGTTCTTATCCATACTGGTTTTCAGATTGCTTTCCAGATTTTTCACTTATTTTCAGATTTTGATTTTCAGGAATTGTTAAAAATAAATAACGTAGAACGTAGTTATCCGGATAAAAAAATTGAAATGAAATTTCAGAAATGTGGCTTCGAATGAATGCTCTGGAATATATGAAAACTGCCTTTCATAGAAGATTGTTCATGAAAACTATAGGAAAGTTGCATTGAAGTTTTCTTTTGAATTCCTGTCTGATCATCAATCTTTTTCTCTTTTTTTAACAAACACACATTTTTTCCAATCGATTTTCATGGAAAAATAATAATAAATTTATTTGAATACCGTTCAACCTGTAACAGAAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>497 273 109 85 36</canonical_bands>
                <polymorphic_bands>770 109 85 36</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>317 180 148 109 85 68 46 36 11</canonical_bands>
                <polymorphic_bands>317 248 148 109 85 46 36 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCACTATGTAAATGAACGTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAAATGTGATCTGTATTCTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTCACTATGTAAATGAACGTTTTTTTAGATCTGGACTCCCAACACCGGAAGAAGCCGAGCAAATCAAGGCATTGAAGGAGAAATACGCAAAGTTGTACCGAAAAAAGTAGAGGGCACTTTTCAAATTTTTTTTGTATAGGGTAGATTGTTTTTTGTTATTTTTCTGTTTTGTTTTCGAAAAAAAAGTTTGAAATTATTTGAAAATATTGGACTATTCTATCTAAAGAGGAGAATACAGATCACATTTG</canonical_amplicon>
		<polymorphic_amplicon>CTTCACTATGTAAATGAACGTTTTTTTAGATCTGGACTCCCAACACCGGAAGAAGCCGAGCAAATCAAGGCATTGAAGGAGAAATACGCAAAGTTGTACCGAAAAAAGTAGAGGGCACTTTTCAAAWTTTTTTTGTATAGGGTAGATTGTTTTTTGTTATTTTTCTGTTTTGTTTTCGAAAAAAAAGTTTGAAATTATTTGAAAATATTGGACTATTCTATCTAAAGAGGAGAATACAGATCACATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3578</snp_id>
        <super_contig>c001601152.Contig1</super_contig>
        <contig_pos>15078</contig_pos>
        <strand>+</strand>
        <context>ATTCAAAACA[C/T]AAAATCTCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTACATTTACAAAATAAGACCTCAAACTTCAGTGTGTCATTCAAAACA</left_flank>
        <right_flank>AAAATCTCTAATATCTTCATTCGGGGAAATAATAGCCAATATCAAACTGA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGACGGATCTGGGTCGCTGGTACCAAGAAACTCTTGAAGTGGTTTGTATGTATAAGGAAAAGTTTGTTTCATGGTTTATTGGGCTTTAAGATTGGTGCTCCTCCGGAATTGTACAAAAAATTGACAAGAAAAAGACGAATGAAAGCCAAAGATTCGTTGATTCGATTTTCGGAAATTACCAGCTCTATTTTTTCAAAATTCAATGAGCTTGAGCAGAATTTGGGAAGATTGGAGTTACAAGACGTTGACTTGAAGGTAATTTGTTTACCGTAAAACCTGTAATAGAAGGTCCCCCTAACCTTCAAAAGAAAGGTCAACTGATAAATGGTTTATCATAATATCACAAGCAAGTTATCAGTTGACACATTTTTGTTATCTTGCATAGAAACCAAGAAAAGGTAGTTTAAACTTAACAGTGTTGGGGCCCTTCTATTACAGGTTTTACGGTTTTTACATTTACAAAATAAGACCTCAAACTTCAGTGTGTCATTCAAAACATAAAATCTCTAATATCTTCATTCGGGGAAATAATAGCCAATATCAAACTGACCATCGAGATTGGTGAAATTATTGATTCCAAACGGAGGGACGAGTTTGTTATACTAAAAAATCACCTTTTCGAAGATGTGAGTGATGTTAACTGATGCATTTCAAATAGATGCGATTTCAGATCAATAATATCCAACTGATATACGATGGAAAACGAGATATTGAGAAAAACCTCGTCGACAGATTTATAAAGTGCTGATTTCATTGAAGTTCCTTTTGAATTTCATTGTTATTTTGACTTCTTTACATTTTCTTTTTCTGAATAATTGTTTCTAAGCTCTCGAATTCTTCTGTGTTTGATATACTGGTTCATCAACCTTTTACCTTATTTTTAGTTATTCAGATTAGTTCTATTTCTTTCCTTTAGATTTCTTGAGAGTTATGTCATCACCACCTCAAAACAGAAAAATCATTCGAGAAGATGCAGAACTGGAGGTTGAGCAAAGCAGA</canonical>
            <polymorphic>TCGACGGATCTGGGTCGCTGGTACCAAGAAACTCTTGAAGTGGTTTGTATGTATAAGGAAAAGTTTGTTTCATGGTTTATTGGGCTTTAAGATTGGTGCTCCTCCGGAATTGTACAAAAAATTGACAAGAAAAAGACGAATGAAAGCCAAAGATTCGTTGATTCGATTTTCGGAAATTACCAGCTCTATTTTTTCAAAATTCAATGAGCTTGAGCAGAATTTGGGAAGATTGGAGTTACAAGACGTTGACTTGAAGGTAATTTGTTTACCGTAAAACCTGTAATAGAAGGTCCCCCTAACCTTCAAAAGAAAGGTCAACTGATAAATGGTTTATCATAATATCACAAGCAAGTTATCAGTTGACACATTTTTGTTATCTTGCATAGAAACCAAGAAAAGGTAGTTTAAACTTAACAGTGTTGGGGCCCTTCTATTACAGGTTTTACGGTTTTTACATTTACAAAATAAGACCTCAAACTTCAGTGTGTCATTCAAAACAYAAAATCTCTAATATCTTCATTCGGGGAAATAATAGCCAATATCAAACTGACCATCGAGATTGGTGAAATTATTGATTCCAAACGGAGGGACGAGTTTGTTATACTAAAAAATCACCTTTTCGAAGATGTGAGTGATGTTAACTGATGCATTTCAAATAGATGCGATTTCAGATCAATAATATCCAACTGATATACGATGGAAAACGAGATATTGAGAAAAACCTCGTCGACAGATTTATAAAGTGCTGATTTCATTGAAGTTCCTTTTGAATTTCATTGTTATTTTGACTTCTTTACATTTTCTTTTTCTGAATAATTGTTTCTAAGCTCTCGAATTCTTCTGTGTTTGATATACTGGTTCATCAACCTTTTACCTTATTTTTAGTTATTCAGATTAGTTCTATTTCTTTCCTTTAGATTTCTTGAGAGTTATGTCATCACCACCTCAAAACAGAAAAATCATTCGAGAAGATGCAGAACTGGAGGTTGAGCAAAGCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGACTTGAAGGTAATTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TGGTCAGTTTGATATTGGCTAT</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>GTTGACTTGAAGGTAATTTGTTTACCGTAAAACCTGTAATAGAAGGTCCCCCTAACCTTCAAAAGAAAGGTCAACTGATAAATGGTTTATCATAATATCACAAGCAAGTTATCAGTTGACACATTTTTGTTATCTTGCATAGAAACCAAGAAAAGGTAGTTTAAACTTAACAGTGTTGGGGCCCTTCTATTACAGGTTTTACGGTTTTTACATTTACAAAATAAGACCTCAAACTTCAGTGTGTCATTCAAAACATAAAATCTCTAATATCTTCATTCGGGGAAATAATAGCCAATATCAAACTGACCA</canonical_amplicon>
		<polymorphic_amplicon>GTTGACTTGAAGGTAATTTGTTTACCGTAAAACCTGTAATAGAAGGTCCCCCTAACCTTCAAAAGAAAGGTCAACTGATAAATGGTTTATCATAATATCACAAGCAAGTTATCAGTTGACACATTTTTGTTATCTTGCATAGAAACCAAGAAAAGGTAGTTTAAACTTAACAGTGTTGGGGCCCTTCTATTACAGGTTTTACGGTTTTTACATTTACAAAATAAGACCTCAAACTTCAGTGTGTCATTCAAAACAYAAAATCTCTAATATCTTCATTCGGGGAAATAATAGCCAATATCAAACTGACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3579</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>178096</contig_pos>
        <strand></strand>
        <context>ctttccgata[C/T]tgtaaaattg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAGAAATGTTTTGAAACCCTTTTTTCCTGCTTAAAAGCGCTTTCCGATA</left_flank>
        <right_flank>TGTAAAATTGATAGATTTTTAAAAATTCAAGTAAGAATTCACCGATTTTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTCTTCTGGAAATGAATCAAATGCTGAATAGTGAAGATATCAGCCGGCTGGTGGGTTTTTTTTTCCGAAAAATTTGCATTTTTATAATGATGAACCGGGAGTTCTTATGAGTTACCAATCGCAAGTCATTGAATTATAATACTTGATGTTCCCAATTTTCTCAAAAAACACCATTTAAATAAAATCTTTCAGAACACTCCCATATTCGAAGAAGAGATGTTAAATGAAGAACAAATAGAACCGTGGCGGGATGAGGGCCTCCGTGAAGCTATGGCACGTCTTCCAAATTCTGTGAGTTGTTAAAGCACCTCAAAATCTGTAATAGAAGATTTTTTGCAATTAAAAGGTTTATTTAACAAAAGGGCCTTCCGAGAAGGGTTAAAAAAATTATTGAGAAAAAAATCCTTCAATATTGATTCCTGAAAAATTTCAAAATTTCCACGATTTCACAGAAATGTTTTGAAACCCTTTTTTCCTGCTTAAAAGCGCTTTCCGATACTGTAAAATTGATAGATTTTTAAAAATTCAAGTAAGAATTCACCGATTTTTCAAATCAACATTTCCGGAAAGTTACGTTGAAACATTAAAAATGGCTTCCTTCTAAATGGGGATTTACAGTATGTAGGATAATCACAAGTTTCCCTACTTTTTGGAGCTTTCACAGTTCAAAAACCGAATATATAATCAAATCCGTAGTTTATAAAAAGAGAGTCATTATTTAAAGGCAATAATAAAAAAAACAAAAAAGCTGAAGATCATTTTGATCGTATATTACGAGTTAAAATAAAAATGAAAACCACGTTTTTACATTGCATTTTTTCCAGCACTGTCAGAAAATTTTGGAAGAATCTAGATTGGAAACTTTCCATATGCAATTTTTTGAGAAAGTTAAAAAAATTTAAATTTTAAAAAATGACCGAAGTGGCCAAAATGACCGAAAATATATTGCTGTTGTGTATTTACTTTACCTTGATTTATTTTCAGGAACTAGGAGAGTCT</canonical>
            <polymorphic>GCTCTTCTGGAAATGAATCAAATGCTGAATAGTGAAGATATCAGCCGGCTGGTGGGTTTTTTTTTCCGAAAAATTTGCATTTTTATAATGATGAACCGGGAGTTCTTATGAGTTACCAATCGCAAGTCATTGAATTATAATACTTGATGTTCCCAATTTTCTCAAAAAACACCATTTAAATAAAATCTTTCAGAACACTCCCATATTCGAAGAAGAGATGTTAAATGAAGAACAAATAGAACCGTGGCGGGATGAGGGCCTCCGTGAAGCTATGGCACGTCTTCCAAATTCTGTGAGTTGTTAAAGCACCTCAAAATCTGTAATAGAAGATTTTTTGCAATTAAAAGGTTTATTTAACAAAAGGGCCTTCCGAGAAGGGTTAAAAAAATTATTGAGAAAAAAATCCTTCAATATTGATTCCTGAAAAATTTCAAAATTTCCACGATTTCACAGAAATGTTTTGAAACCCTTTTTTCCTGCTTAAAAGCGCTTTCCGATAYTGTAAAATTGATAGATTTTTAAAAATTCAAGTAAGAATTCACCGATTTTTCAAATCAACATTTCCGGAAAGTTACGTTGAAACATTAAAAATGGCTTCCTTCTAAATGGGGATTTACAGTATGTAGGATAATCACAAGTTTCCCTACTTTTTGGAGCTTTCACAGTTCAAAAACCGAATATATAATCAAATCCGTAGTTTATAAAAAGAGAGTCATTATTTAAAGGCAATAATAAAAAAAACAAAAAAGCTGAAGATCATTTTGATCGTATATTACGAGTTAAAATAAAAATGAAAACCACGTTTTTACATTGCATTTTTTCCAGCACTGTCAGAAAATTTTGGAAGAATCTAGATTGGAAACTTTCCATATGCAATTTTTTGAGAAAGTTAAAAAAATTTAAATTTTAAAAAATGACCGAAGTGGCCAAAATGACCGAAAATATATTGCTGTTGTGTATTTACTTTACCTTGATTTATTTTCAGGAACTAGGAGAGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>258 243 171 165 117 46</canonical_bands>
                <polymorphic_bands>375 243 171 165 46</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCCGAGAAGGGTTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTGTGAAAGCTCCAAAAAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>299</pcr_amplicon_size>
		<canonical_amplicon>CTTCCGAGAAGGGTTAAAAAAATTATTGAGAAAAAAATCCTTCAATATTGATTCCTGAAAAATTTCAAAATTTCCACGATTTCACAGAAATGTTTTGAAACCCTTTTTTCCTGCTTAAAAGCGCTTTCCGATACTGTAAAATTGATAGATTTTTAAAAATTCAAGTAAGAATTCACCGATTTTTCAAATCAACATTTCCGGAAAGTTACGTTGAAACATTAAAAATGGCTTCCTTCTAAATGGGGATTTACAGTATGTAGGATAATCACAAGTTTCCCTACTTTTTGGAGCTTTCACAG</canonical_amplicon>
		<polymorphic_amplicon>CTTCCGAGAAGGGTTAAAAAAATTATTGAGAAAAAAATCCTTCAATATTGATTCCTGAAAAATTTCAAAATTTCCACGATTTCACAGAAATGTTTTGAAACCCTTTTTTCCTGCTTAAAAGCGCTTTCCGATAYTGTAAAATTGATAGATTTTTAAAAATTCAAGTAAGAATTCACCGATTTTTCAAATCAACATTTCCGGAAAGTTACGTTGAAACATTAAAAATGGCTTCCTTCTAAATGGGGATTTACAGTATGTAGGATAATCACAAGTTTCCCTACTTTTTGGAGCTTTCACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3580</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>178239</contig_pos>
        <strand></strand>
        <context>CACAAGTTTC[C/A]CTACTTTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GGCTTCCTTCTAAATGGGGATTTACAGTATGTAGGATAATCACAAGTTTC</left_flank>
        <right_flank>CTACTTTTTGGAGCTTTCACAGTTCAAAAACCGAATATATAATCAAATCC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGATGTTCCCAATTTTCTCAAAAAACACCATTTAAATAAAATCTTTCAGAACACTCCCATATTCGAAGAAGAGATGTTAAATGAAGAACAAATAGAACCGTGGCGGGATGAGGGCCTCCGTGAAGCTATGGCACGTCTTCCAAATTCTGTGAGTTGTTAAAGCACCTCAAAATCTGTAATAGAAGATTTTTTGCAATTAAAAGGTTTATTTAACAAAAGGGCCTTCCGAGAAGGGTTAAAAAAATTATTGAGAAAAAAATCCTTCAATATTGATTCCTGAAAAATTTCAAAATTTCCACGATTTCACAGAAATGTTTTGAAACCCTTTTTTCCTGCTTAAAAGCGCTTTCCGATACTGTAAAATTGATAGATTTTTAAAAATTCAAGTAAGAATTCACCGATTTTTCAAATCAACATTTCCGGAAAGTTACGTTGAAACATTAAAAATGGCTTCCTTCTAAATGGGGATTTACAGTATGTAGGATAATCACAAGTTTCCCTACTTTTTGGAGCTTTCACAGTTCAAAAACCGAATATATAATCAAATCCGTAGTTTATAAAAAGAGAGTCATTATTTAAAGGCAATAATAAAAAAAACAAAAAAGCTGAAGATCATTTTGATCGTATATTACGAGTTAAAATAAAAATGAAAACCACGTTTTTACATTGCATTTTTTCCAGCACTGTCAGAAAATTTTGGAAGAATCTAGATTGGAAACTTTCCATATGCAATTTTTTGAGAAAGTTAAAAAAATTTAAATTTTAAAAAATGACCGAAGTGGCCAAAATGACCGAAAATATATTGCTGTTGTGTATTTACTTTACCTTGATTTATTTTCAGGAACTAGGAGAGTCTCCCTACAACTTCGACATCGAAAATGGCTACAATTGGTTTGAAGAGTTTGATGGCGTCTAATATGCCTCGATTTTAACATTGCCAAGAATTTTATTAATTCTCAAATCTTTGTTTTCTTTTTTCATTGTTACCTTTTTCACGCT</canonical>
            <polymorphic>TTGATGTTCCCAATTTTCTCAAAAAACACCATTTAAATAAAATCTTTCAGAACACTCCCATATTCGAAGAAGAGATGTTAAATGAAGAACAAATAGAACCGTGGCGGGATGAGGGCCTCCGTGAAGCTATGGCACGTCTTCCAAATTCTGTGAGTTGTTAAAGCACCTCAAAATCTGTAATAGAAGATTTTTTGCAATTAAAAGGTTTATTTAACAAAAGGGCCTTCCGAGAAGGGTTAAAAAAATTATTGAGAAAAAAATCCTTCAATATTGATTCCTGAAAAATTTCAAAATTTCCACGATTTCACAGAAATGTTTTGAAACCCTTTTTTCCTGCTTAAAAGCGCTTTCCGATACTGTAAAATTGATAGATTTTTAAAAATTCAAGTAAGAATTCACCGATTTTTCAAATCAACATTTCCGGAAAGTTACGTTGAAACATTAAAAATGGCTTCCTTCTAAATGGGGATTTACAGTATGTAGGATAATCACAAGTTTCMCTACTTTTTGGAGCTTTCACAGTTCAAAAACCGAATATATAATCAAATCCGTAGTTTATAAAAAGAGAGTCATTATTTAAAGGCAATAATAAAAAAAACAAAAAAGCTGAAGATCATTTTGATCGTATATTACGAGTTAAAATAAAAATGAAAACCACGTTTTTACATTGCATTTTTTCCAGCACTGTCAGAAAATTTTGGAAGAATCTAGATTGGAAACTTTCCATATGCAATTTTTTGAGAAAGTTAAAAAAATTTAAATTTTAAAAAATGACCGAAGTGGCCAAAATGACCGAAAATATATTGCTGTTGTGTATTTACTTTACCTTGATTTATTTTCAGGAACTAGGAGAGTCTCCCTACAACTTCGACATCGAAAATGGCTACAATTGGTTTGAAGAGTTTGATGGCGTCTAATATGCCTCGATTTTAACATTGCCAAGAATTTTATTAATTCTCAAATCTTTGTTTTCTTTTTTCATTGTTACCTTTTTCACGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCCGAGAAGGGTTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TCTCTTTTTATAAACTACGGATTTG</pcr_primer_p2>
		<pcr_amplicon_size>345</pcr_amplicon_size>
		<canonical_amplicon>CTTCCGAGAAGGGTTAAAAAAATTATTGAGAAAAAAATCCTTCAATATTGATTCCTGAAAAATTTCAAAATTTCCACGATTTCACAGAAATGTTTTGAAACCCTTTTTTCCTGCTTAAAAGCGCTTTCCGATACTGTAAAATTGATAGATTTTTAAAAATTCAAGTAAGAATTCACCGATTTTTCAAATCAACATTTCCGGAAAGTTACGTTGAAACATTAAAAATGGCTTCCTTCTAAATGGGGATTTACAGTATGTAGGATAATCACAAGTTTCCCTACTTTTTGGAGCTTTCACAGTTCAAAAACCGAATATATAATCAAATCCGTAGTTTATAAAAAGAGA</canonical_amplicon>
		<polymorphic_amplicon>CTTCCGAGAAGGGTTAAAAAAATTATTGAGAAAAAAATCCTTCAATATTGATTCCTGAAAAATTTCAAAATTTCCACGATTTCACAGAAATGTTTTGAAACCCTTTTTTCCTGCTTAAAAGCGCTTTCCGATACTGTAAAATTGATAGATTTTTAAAAATTCAAGTAAGAATTCACCGATTTTTCAAATCAACATTTCCGGAAAGTTACGTTGAAACATTAAAAATGGCTTCCTTCTAAATGGGGATTTACAGTATGTAGGATAATCACAAGTTTCMCTACTTTTTGGAGCTTTCACAGTTCAAAAACCGAATATATAATCAAATCCGTAGTTTATAAAAAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3581</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>178270</contig_pos>
        <strand></strand>
        <context>AGTTCAAAAA[C/T]CGAATATATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGGATAATCACAAGTTTCCCTACTTTTTGGAGCTTTCACAGTTCAAAAA</left_flank>
        <right_flank>CGAATATATAATCAAATCCGTAGTTTATAAAAAGAGAGTCATTATTTAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAAATAAAATCTTTCAGAACACTCCCATATTCGAAGAAGAGATGTTAAATGAAGAACAAATAGAACCGTGGCGGGATGAGGGCCTCCGTGAAGCTATGGCACGTCTTCCAAATTCTGTGAGTTGTTAAAGCACCTCAAAATCTGTAATAGAAGATTTTTTGCAATTAAAAGGTTTATTTAACAAAAGGGCCTTCCGAGAAGGGTTAAAAAAATTATTGAGAAAAAAATCCTTCAATATTGATTCCTGAAAAATTTCAAAATTTCCACGATTTCACAGAAATGTTTTGAAACCCTTTTTTCCTGCTTAAAAGCGCTTTCCGATACTGTAAAATTGATAGATTTTTAAAAATTCAAGTAAGAATTCACCGATTTTTCAAATCAACATTTCCGGAAAGTTACGTTGAAACATTAAAAATGGCTTCCTTCTAAATGGGGATTTACAGTATGTAGGATAATCACAAGTTTCCCTACTTTTTGGAGCTTTCACAGTTCAAAAACCGAATATATAATCAAATCCGTAGTTTATAAAAAGAGAGTCATTATTTAAAGGCAATAATAAAAAAAACAAAAAAGCTGAAGATCATTTTGATCGTATATTACGAGTTAAAATAAAAATGAAAACCACGTTTTTACATTGCATTTTTTCCAGCACTGTCAGAAAATTTTGGAAGAATCTAGATTGGAAACTTTCCATATGCAATTTTTTGAGAAAGTTAAAAAAATTTAAATTTTAAAAAATGACCGAAGTGGCCAAAATGACCGAAAATATATTGCTGTTGTGTATTTACTTTACCTTGATTTATTTTCAGGAACTAGGAGAGTCTCCCTACAACTTCGACATCGAAAATGGCTACAATTGGTTTGAAGAGTTTGATGGCGTCTAATATGCCTCGATTTTAACATTGCCAAGAATTTTATTAATTCTCAAATCTTTGTTTTCTTTTTTCATTGTTACCTTTTTCACGCTTTTTTTCCTAACTTTTAATTTTTTTACTGTT</canonical>
            <polymorphic>TTTAAATAAAATCTTTCAGAACACTCCCATATTCGAAGAAGAGATGTTAAATGAAGAACAAATAGAACCGTGGCGGGATGAGGGCCTCCGTGAAGCTATGGCACGTCTTCCAAATTCTGTGAGTTGTTAAAGCACCTCAAAATCTGTAATAGAAGATTTTTTGCAATTAAAAGGTTTATTTAACAAAAGGGCCTTCCGAGAAGGGTTAAAAAAATTATTGAGAAAAAAATCCTTCAATATTGATTCCTGAAAAATTTCAAAATTTCCACGATTTCACAGAAATGTTTTGAAACCCTTTTTTCCTGCTTAAAAGCGCTTTCCGATACTGTAAAATTGATAGATTTTTAAAAATTCAAGTAAGAATTCACCGATTTTTCAAATCAACATTTCCGGAAAGTTACGTTGAAACATTAAAAATGGCTTCCTTCTAAATGGGGATTTACAGTATGTAGGATAATCACAAGTTTCCCTACTTTTTGGAGCTTTCACAGTTCAAAAAYCGAATATATAATCAAATCCGTAGTTTATAAAAAGAGAGTCATTATTTAAAGGCAATAATAAAAAAAACAAAAAAGCTGAAGATCATTTTGATCGTATATTACGAGTTAAAATAAAAATGAAAACCACGTTTTTACATTGCATTTTTTCCAGCACTGTCAGAAAATTTTGGAAGAATCTAGATTGGAAACTTTCCATATGCAATTTTTTGAGAAAGTTAAAAAAATTTAAATTTTAAAAAATGACCGAAGTGGCCAAAATGACCGAAAATATATTGCTGTTGTGTATTTACTTTACCTTGATTTATTTTCAGGAACTAGGAGAGTCTCCCTACAACTTCGACATCGAAAATGGCTACAATTGGTTTGAAGAGTTTGATGGCGTCTAATATGCCTCGATTTTAACATTGCCAAGAATTTTATTAATTCTCAAATCTTTGTTTTCTTTTTTCATTGTTACCTTTTTCACGCTTTTTTTCCTAACTTTTAATTTTTTTACTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCCGAGAAGGGTTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGCCTTTAAATAATGACTCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>362</pcr_amplicon_size>
		<canonical_amplicon>CTTCCGAGAAGGGTTAAAAAAATTATTGAGAAAAAAATCCTTCAATATTGATTCCTGAAAAATTTCAAAATTTCCACGATTTCACAGAAATGTTTTGAAACCCTTTTTTCCTGCTTAAAAGCGCTTTCCGATACTGTAAAATTGATAGATTTTTAAAAATTCAAGTAAGAATTCACCGATTTTTCAAATCAACATTTCCGGAAAGTTACGTTGAAACATTAAAAATGGCTTCCTTCTAAATGGGGATTTACAGTATGTAGGATAATCACAAGTTTCCCTACTTTTTGGAGCTTTCACAGTTCAAAAACCGAATATATAATCAAATCCGTAGTTTATAAAAAGAGAGTCATTATTTAAAGGCA</canonical_amplicon>
		<polymorphic_amplicon>CTTCCGAGAAGGGTTAAAAAAATTATTGAGAAAAAAATCCTTCAATATTGATTCCTGAAAAATTTCAAAATTTCCACGATTTCACAGAAATGTTTTGAAACCCTTTTTTCCTGCTTAAAAGCGCTTTCCGATACTGTAAAATTGATAGATTTTTAAAAATTCAAGTAAGAATTCACCGATTTTTCAAATCAACATTTCCGGAAAGTTACGTTGAAACATTAAAAATGGCTTCCTTCTAAATGGGGATTTACAGTATGTAGGATAATCACAAGTTTCCCTACTTTTTGGAGCTTTCACAGTTCAAAAAYCGAATATATAATCAAATCCGTAGTTTATAAAAAGAGAGTCATTATTTAAAGGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3582</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>180220</contig_pos>
        <strand>+</strand>
        <context>TTCCCATTGA[C/T]ATTGTACTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGCAAGAAATTCTCAAAAAATTCTTTGTATCCTCGAAATTCCCATTGA</left_flank>
        <right_flank>ATTGTACTCATTTCAAACAGAATTTTACAATTATTACAATTGTAGTAGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGCATTATTTTTCCACTGATACCATGGCACAAGTCGGCTTGTTTTAAATTCAAAAAAGCAATTTTGCCACCACCTTGAGAACACAGTCATGTCCCTTTGTCATGTTGAAGATGTTTGGAATTAACATAATATATGTATTGGCTGAATATAATATAGAATTTGAGACATACATACAGTACCGGTTAATAAGATATACAAAGACGTGTTTCCCGGTTAATTTTCAGTCATTTTCAGGAGTCGGGAGCTTGGCTGCCAAGTGCCCGATCAGGTTGAAAATTGTTGAAAGTGTAAAACAGACCTTGATTGAAAATTTTGCATCCGCAAAAATGTTTCAAATTTTCTAGTTTTTGGGCTACTTGCCGATTTCTGAAGAGCATTCCCTTTTTTCTGTTTTGGTACTGAAAACGTGAGAAAACAAGTGACATTCAGAAATCGTCAAGTAGCTGAAAAGCAAGAAATTCTCAAAAAATTCTTTGTATCCTCGAAATTCCCATTGACATTGTACTCATTTCAAACAGAATTTTACAATTATTACAATTGTAGTAGTTTTATTGGTTATGATAAATATTCAAACTTTTCACAATTCATCTGATTTATGCAAGTTTTTTAAACCTAATTTTTGGTTTAGATCCAATTTTTTGTTATCTCACGTCTTCTTATTTCTTGTTTTCGTCAGTTTTGTACTCTTACAAAGGAACATCAACACCTTGTCAACCCTGATTTTGATGAAAGTTTCCTGATAGGTTAAAAATAGTCTACCTAAACAATTTGATGAATAATCCTTATCTCACAATCTTGTCAGACATTTTTTCAAAACAAATTACTATATTTTCGAAATTTTCTACGAATTTTGACATTTATTCGAAAATTGAAAAAAAAACATTTTTTTTTTTGAGGAAATGTCTAACATATGAAATTTCATTCAATTATTTTGTACTGTCTTCCCTACCCCTAGTGAAAATGCACATTTCTATCGAGAAAAATCATCTGCGTGGTAT</canonical>
            <polymorphic>TAGGCATTATTTTTCCACTGATACCATGGCACAAGTCGGCTTGTTTTAAATTCAAAAAAGCAATTTTGCCACCACCTTGAGAACACAGTCATGTCCCTTTGTCATGTTGAAGATGTTTGGAATTAACATAATATATGTATTGGCTGAATATAATATAGAATTTGAGACATACATACAGTACCGGTTAATAAGATATACAAAGACGTGTTTCCCGGTTAATTTTCAGTCATTTTCAGGAGTCGGGAGCTTGGCTGCCAAGTGCCCGATCAGGTTGAAAATTGTTGAAAGTGTAAAACAGACCTTGATTGAAAATTTTGCATCCGCAAAAATGTTTCAAATTTTCTAGTTTTTGGGCTACTTGCCGATTTCTGAAGAGCATTCCCTTTTTTCTGTTTTGGTACTGAAAACGTGAGAAAACAAGTGACATTCAGAAATCGTCAAGTAGCTGAAAAGCAAGAAATTCTCAAAAAATTCTTTGTATCCTCGAAATTCCCATTGAYATTGTACTCATTTCAAACAGAATTTTACAATTATTACAATTGTAGTAGTTTTATTGGTTATGATAAATATTCAAACTTTTCACAATTCATCTGATTTATGCAAGTTTTTTAAACCTAATTTTTGGTTTAGATCCAATTTTTTGTTATCTCACGTCTTCTTATTTCTTGTTTTCGTCAGTTTTGTACTCTTACAAAGGAACATCAACACCTTGTCAACCCTGATTTTGATGAAAGTTTCCTGATAGGTTAAAAATAGTCTACCTAAACAATTTGATGAATAATCCTTATCTCACAATCTTGTCAGACATTTTTTCAAAACAAATTACTATATTTTCGAAATTTTCTACGAATTTTGACATTTATTCGAAAATTGAAAAAAAAACATTTTTTTTTTTGAGGAAATGTCTAACATATGAAATTTCATTCAATTATTTTGTACTGTCTTCCCTACCCCTAGTGAAAATGCACATTTCTATCGAGAAAAATCATCTGCGTGGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGGCTGAATATAATATAGAATTTG</pcr_primer_p1>
		<pcr_primer_p2>GATGAATTGTGAAAAGTTTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>453</pcr_amplicon_size>
		<canonical_amplicon>ATTGGCTGAATATAATATAGAATTTGAGACATACATACAGTACCGGTTAATAAGATATACAAAGACGTGTTTCCCGGTTAATTTTCAGTCATTTTCAGGAGTCGGGAGCTTGGCTGCCAAGTGCCCGATCAGGTTGAAAATTGTTGAAAGTGTAAAACAGACCTTGATTGAAAATTTTGCATCCGCAAAAATGTTTCAAATTTTCTAGTTTTTGGGCTACTTGCCGATTTCTGAAGAGCATTCCCTTTTTTCTGTTTTGGTACTGAAAACGTGAGAAAACAAGTGACATTCAGAAATCGTCAAGTAGCTGAAAAGCAAGAAATTCTCAAAAAATTCTTTGTATCCTCGAAATTCCCATTGACATTGTACTCATTTCAAACAGAATTTTACAATTATTACAATTGTAGTAGTTTTATTGGTTATGATAAATATTCAAACTTTTCACAATTCATC</canonical_amplicon>
		<polymorphic_amplicon>ATTGGCTGAATATAATATAGAATTTGAGACATACATACAGTACCGGTTAATAAGATATACAAAGACGTGTTTCCCGGTTAATTTTCAGTCATTTTCAGGAGTCGGGAGCTTGGCTGCCAAGTGCCCGATCAGGTTGAAAATTGTTGAAAGTGTAAAACAGACCTTGATTGAAAATTTTGCATCCGCAAAAATGTTTCAAATTTTCTAGTTTTTGGGCTACTTGCCGATTTCTGAAGAGCATTCCCTTTTTTCTGTTTTGGTACTGAAAACGTGAGAAAACAAGTGACATTCAGAAATCGTCAAGTAGCTGAAAAGCAAGAAATTCTCAAAAAATTCTTTGTATCCTCGAAATTCCCATTGAYATTGTACTCATTTCAAACAGAATTTTACAATTATTACAATTGTAGTAGTTTTATTGGTTATGATAAATATTCAAACTTTTCACAATTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3583</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>158573</contig_pos>
        <strand></strand>
        <context>ctctctcggt[A/T]ggccgacgcg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACGTGATGGTGTACAGTGGCTATTGTAATACGTTCATATACTCTCTCGGT</left_flank>
        <right_flank>GGCCGACGCGTGTGACCGCGTAGATAACCTGTAGCAACGCGGCATCTCTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTTTCGAGGGGTTTGTAATTTTGAGTCTGAGAATATTTTCCGATGAGTGTTTGGGACGATTTTTTTTGTAGTTTTAACTTGAGTTATAGGTTGAAGTTAAAGAAAATAAGACTTGAGACTCCATCGTTGATGCGTAAATTTTCGAGGGATACTTCGAAAATCAATGGGAATGCGGTGGAGCGCCTCTTGCATCAAAACAGATACTTTTAAAAAACAAGCTAAAATTTTGATATAGTCTAGTTTATATAGTCTAGTTTAGTTTATCGGTCAAGAATAGCTCGCACTGCTGGAACCATTAAAAATGGCTCAAGAAAGAGAACATTCGATTCGGCTTTTTCTGATTTTAGTTATTTATGATAATTGTAAATTTCATAGAACTTTCGTATTTATGTCGGTCGTGCAAGAGGAGAATTTCGCACTGGTTTTTTAACGAGGGTGTGCATTTTGACGTGATGGTGTACAGTGGCTATTGTAATACGTTCATATACTCTCTCGGTAGGCCGACGCGTGTGACCGCGTAGATAACCTGTAGCAACGCGGCATCTCTGATATTATACCCAAAAGTTGAATTTCTTAAAGAACTTTTTTCGATAGCTTATTTCATGAAAGCCAGCTTTTTAATATACCTAGATCATACGAAAAAGTAATAAAATTGTCATAGAATGTTTGTTAAAGTCAAAGCCCTGTGTCTTAATTATTATTGAAGAGAAGTACTTCTGTTTGATATCAAACATGTGAAACAGAAACTATTTTTTAACTGAAATTACTTTTACTAACTTTCAAACCATATTGCAGTCCAACTTGAACGTGATCGTATTCATGGTTCAAAACGGACAAATCACCACTCGAACCGGAAGAACCACTGGATACGGACCACCAGTTTTCGACAATCAAAACAACATCAACGTATCAATGGCAAATCACTCTGGCTCAACTTTGAATGCTCTCGTTTCTGTACCATTGAACTTCAACGGAATGAATGTTCAGAATTGTCAGAC</canonical>
            <polymorphic>CTGTTTCGAGGGGTTTGTAATTTTGAGTCTGAGAATATTTTCCGATGAGTGTTTGGGACGATTTTTTTTGTAGTTTTAACTTGAGTTATAGGTTGAAGTTAAAGAAAATAAGACTTGAGACTCCATCGTTGATGCGTAAATTTTCGAGGGATACTTCGAAAATCAATGGGAATGCGGTGGAGCGCCTCTTGCATCAAAACAGATACTTTTAAAAAACAAGCTAAAATTTTGATATAGTCTAGTTTATATAGTCTAGTTTAGTTTATCGGTCAAGAATAGCTCGCACTGCTGGAACCATTAAAAATGGCTCAAGAAAGAGAACATTCGATTCGGCTTTTTCTGATTTTAGTTATTTATGATAATTGTAAATTTCATAGAACTTTCGTATTTATGTCGGTCGTGCAAGAGGAGAATTTCGCACTGGTTTTTTAACGAGGGTGTGCATTTTGACGTGATGGTGTACAGTGGCTATTGTAATACGTTCATATACTCTCTCGGTWGGCCGACGCGTGTGACCGCGTAGATAACCTGTAGCAACGCGGCATCTCTGATATTATACCCAAAAGTTGAATTTCTTAAAGAACTTTTTTCGATAGCTTATTTCATGAAAGCCAGCTTTTTAATATACCTAGATCATACGAAAAAGTAATAAAATTGTCATAGAATGTTTGTTAAAGTCAAAGCCCTGTGTCTTAATTATTATTGAAGAGAAGTACTTCTGTTTGATATCAAACATGTGAAACAGAAACTATTTTTTAACTGAAATTACTTTTACTAACTTTCAAACCATATTGCAGTCCAACTTGAACGTGATCGTATTCATGGTTCAAAACGGACAAATCACCACTCGAACCGGAAGAACCACTGGATACGGACCACCAGTTTTCGACAATCAAAACAACATCAACGTATCAATGGCAAATCACTCTGGCTCAACTTTGAATGCTCTCGTTTCTGTACCATTGAACTTCAACGGAATGAATGTTCAGAATTGTCAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGCTTTTTCTGATTTTAGTTAT</pcr_primer_p1>
		<pcr_primer_p2>TTAAGAAATTCAACTTTTGGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGGCTTTTTCTGATTTTAGTTATTTATGATAATTGTAAATTTCATAGAACTTTCGTATTTATGTCGGTCGTGCAAGAGGAGAATTTCGCACTGGTTTTTTAACGAGGGTGTGCATTTTGACGTGATGGTGTACAGTGGCTATTGTAATACGTTCATATACTCTCTCGGTAGGCCGACGCGTGTGACCGCGTAGATAACCTGTAGCAACGCGGCATCTCTGATATTATACCCAAAAGTTGAATTTCTTAA</canonical_amplicon>
		<polymorphic_amplicon>CGGCTTTTTCTGATTTTAGTTATTTATGATAATTGTAAATTTCATAGAACTTTCGTATTTATGTCGGTCGTGCAAGAGGAGAATTTCGCACTGGTTTTTTAACGAGGGTGTGCATTTTGACGTGATGGTGTACAGTGGCTATTGTAATACGTTCATATACTCTCTCGGTWGGCCGACGCGTGTGACCGCGTAGATAACCTGTAGCAACGCGGCATCTCTGATATTATACCCAAAAGTTGAATTTCTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3584</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>160000</contig_pos>
        <strand>+</strand>
        <context>CTCGAAAAAT[G/T]TTCAAAGTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGACCGTTGCAATGTCCAGTGAACGTTACAATCATATAGACTCGAAAAAT</left_flank>
        <right_flank>TTCAAAGTCAATGGAAATAATTTTAAAATTTCTGAGGCATCAATCTTATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAATAGTTTCCGCTCTTTGTGATACCGAGAAAAAAAATTGGTAGGCAAAACCCTATCAAATATTTGCCACATTTTCTTCCTCAAAAACTTCTGTTTTCCAAATGATTCGACACCCACATAAATAAATCGAAAAGTAAACACTTGGTGTGAGCTTAAATTCTCGAAAACCAAAAATCGAAACGGAAAAAAATGTTGAGCTCTCAAATTCTGATACTTGCTACTATTGGAGTGGTTGCATCGCAGACATGTAATTTCCAAAAGTCAGCTGTGAAAGCGAATTGGAAAATCGTGAATGGAGCATTGCAAATTCAGTATCAGAATATATAATCAATGGACTGCAATTGGATTTGGTCCTGGAATGGTGAGCAATCATTTTTGTTTCAAAGAGGAATATTTTCGTTTTTTAATGTTAATCGGTTATGTTTCTAAAAATTCTAAAACCTCCAGGGACCGTTGCAATGTCCAGTGAACGTTACAATCATATAGACTCGAAAAATGTTCAAAGTCAATGGAAATAATTTTAAAATTTCTGAGGCATCAATCTTATAAATAAAATGTAGTGCTTATAAATAAAATGTACAATCGAAGCCCTTTGTTAAAAACGATAACATATCGATAGGTTGAGCTAGAAGACTGTGGTAAAAAAGATTTCCTGATCTTAAATTTTTGTTACAAATTGCTCAAAATAGAAGAAAGTTCAGATTCGACAAATTCAAGTACTCAGTGAACCATATAATTTTTCGAACTATCTATTTTGATCATACATGTGGATGGCCGGGCCNNNNNNNNNNCAAGTTTTCTTTAATTTCAGATCACTATCAATGTATCAATGCTGTGCGCATTTGGAATCATCATTTTCTATTGCTTCTTCCTTTCTCCCGCCAAAAAATCTCTAAAAATCTTTTTTAATTTATCTGATTATCTATTTTGGACCCTTCTAATTACCCAATTAGTCATTATGATAATCAATTTGATTTATGGAATTTCACTCAAAGATT</canonical>
            <polymorphic>CTGAATAGTTTCCGCTCTTTGTGATACCGAGAAAAAAAATTGGTAGGCAAAACCCTATCAAATATTTGCCACATTTTCTTCCTCAAAAACTTCTGTTTTCCAAATGATTCGACACCCACATAAATAAATCGAAAAGTAAACACTTGGTGTGAGCTTAAATTCTCGAAAACCAAAAATCGAAACGGAAAAAAATGTTGAGCTCTCAAATTCTGATACTTGCTACTATTGGAGTGGTTGCATCGCAGACATGTAATTTCCAAAAGTCAGCTGTGAAAGCGAATTGGAAAATCGTGAATGGAGCATTGCAAATTCAGTATCAGAATATATAATCAATGGACTGCAATTGGATTTGGTCCTGGAATGGTGAGCAATCATTTTTGTTTCAAAGAGGAATATTTTCGTTTTTTAATGTTAATCGGTTATGTTTCTAAAAATTCTAAAACCTCCAGGGACCGTTGCAATGTCCAGTGAACGTTACAATCATATAGACTCGAAAAATKTTCAAAGTCAATGGAAATAATTTTAAAATTTCTGAGGCATCAATCTTATAAATAAAATGTAGTGCTTATAAATAAAATGTACAATCGAAGCCCTTTGTTAAAAACGATAACATATCGATAGGTTGAGCTAGAAGACTGTGGTAAAAAAGATTTCCTGATCTTAAATTTTTGTTACAAATTGCTCAAAATAGAAGAAAGTTCAGATTCGACAAATTCAAGTACTCAGTGAACCATATAATTTTTCGAACTATCTATTTTGATCATACATGTGGATGGCCGGGCCNNNNNNNNNNCAAGTTTTCTTTAATTTCAGATCACTATCAATGTATCAATGCTGTGCGCATTTGGAATCATCATTTTCTATTGCTTCTTCCTTTCTCCCGCCAAAAAATCTCTAAAAATCTTTTTTAATTTATCTGATTATCTATTTTGGACCCTTCTAATTACCCAATTAGTCATTATGATAATCAATTTGATTTATGGAATTTCACTCAAAGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAATGTTAATCGGTTATGTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTACCACAGTCTTCTAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTAATGTTAATCGGTTATGTTTCTAAAAATTCTAAAACCTCCAGGGACCGTTGCAATGTCCAGTGAACGTTACAATCATATAGACTCGAAAAATGTTCAAAGTCAATGGAAATAATTTTAAAATTTCTGAGGCATCAATCTTATAAATAAAATGTAGTGCTTATAAATAAAATGTACAATCGAAGCCCTTTGTTAAAAACGATAACATATCGATAGGTTGAGCTAGAAGACTGTGGTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTAATGTTAATCGGTTATGTTTCTAAAAATTCTAAAACCTCCAGGGACCGTTGCAATGTCCAGTGAACGTTACAATCATATAGACTCGAAAAATKTTCAAAGTCAATGGAAATAATTTTAAAATTTCTGAGGCATCAATCTTATAAATAAAATGTAGTGCTTATAAATAAAATGTACAATCGAAGCCCTTTGTTAAAAACGATAACATATCGATAGGTTGAGCTAGAAGACTGTGGTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3586</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>161807</contig_pos>
        <strand></strand>
        <context>TTGGAATAAA[T/C]AAAATATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTAGATGGCATTATACTTGATTGGAAAACACTGTATTTGATTGGAATAAA</left_flank>
        <right_flank>AAAATATTTTCGGGCAATTACGTTTAATTGGAAACAGTACAAAAACTTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCTGACTAACCAACCAATTTCTAGTCCAATTGAACGTGATCGTGTTTATGGTTCAAAACGGTCAAATCACCACTCGAACCGGAAGAACCACTGGATACGGACCACCAGTTTTCGACAATCAAAACAACATCAACGTATCAATGGCAAATCACTCTGGCTCAACTTTGAATGCTCTCTTTTCTGTTCCATGGAATGTTCGGAATTGTCAAGCTATGAATGTAAGTTGTAGGATTTGTAACAACTAGCTTTGTACTTTGAAACCCATTTAAAAGACAGAAAACATTTAGATTCCAATTTTAAATTGAAGTGGGATTACAGACCAAATTAGCGATGTTCCTTTAAAATCTTAAACATTTTCAGTTCGTACAAAGCGGACCCATAAACAACGGACAAATGGGAGTACACACATCCAGACCGGATCAAGTCAACAATGTTTGCGCGTCACAGTGTAGATGGCATTATACTTGATTGGAAAACACTGTATTTGATTGGAATAAATAAAATATTTTCGGGCAATTACGTTTAATTGGAAACAGTACAAAAACTTGAATGAACAAAAATAATAAAAGAAAAATCTAGATTTCGAAGAAGCACTCTATAGAAAACTATCCTGAATTCTAATGTTTAACACCAGCTTGATTCTAAGAAAATGCTATATCTGAAGGTTGTGAAAAATAATAATTAAAAATTCTAGTTCAAAAATATTTGCCACAGTTAAACATATTTCCCTCCTGAATAGTCTCCGCTCTTTGTGATTTAGCGAGAAAAAAACATCGAAGCAATCGAAGTGAATAAAGTATTTTGGCAATTACTCTTACTATCTATTGGAAACAGTAGAAAAGATAAAGTGATCTCGATGAGAATCAAAGAAGGTTCTAGATTTTTGGAGAAGCTCTCTTTTTTTTAATTCGATCAAAACAGATGATTATCAGTTTGATTTTTGAAGATAACTATATCTCGAGGTTGAAAACTTAATTTTTTTAAAGGAAAATAGAAAAG</canonical>
            <polymorphic>CGCTGACTAACCAACCAATTTCTAGTCCAATTGAACGTGATCGTGTTTATGGTTCAAAACGGTCAAATCACCACTCGAACCGGAAGAACCACTGGATACGGACCACCAGTTTTCGACAATCAAAACAACATCAACGTATCAATGGCAAATCACTCTGGCTCAACTTTGAATGCTCTCTTTTCTGTTCCATGGAATGTTCGGAATTGTCAAGCTATGAATGTAAGTTGTAGGATTTGTAACAACTAGCTTTGTACTTTGAAACCCATTTAAAAGACAGAAAACATTTAGATTCCAATTTTAAATTGAAGTGGGATTACAGACCAAATTAGCGATGTTCCTTTAAAATCTTAAACATTTTCAGTTCGTACAAAGCGGACCCATAAACAACGGACAAATGGGAGTACACACATCCAGACCGGATCAAGTCAACAATGTTTGCGCGTCACAGTGTAGATGGCATTATACTTGATTGGAAAACACTGTATTTGATTGGAATAAAYAAAATATTTTCGGGCAATTACGTTTAATTGGAAACAGTACAAAAACTTGAATGAACAAAAATAATAAAAGAAAAATCTAGATTTCGAAGAAGCACTCTATAGAAAACTATCCTGAATTCTAATGTTTAACACCAGCTTGATTCTAAGAAAATGCTATATCTGAAGGTTGTGAAAAATAATAATTAAAAATTCTAGTTCAAAAATATTTGCCACAGTTAAACATATTTCCCTCCTGAATAGTCTCCGCTCTTTGTGATTTAGCGAGAAAAAAACATCGAAGCAATCGAAGTGAATAAAGTATTTTGGCAATTACTCTTACTATCTATTGGAAACAGTAGAAAAGATAAAGTGATCTCGATGAGAATCAAAGAAGGTTCTAGATTTTTGGAGAAGCTCTCTTTTTTTTAATTCGATCAAAACAGATGATTATCAGTTTGATTTTTGAAGATAACTATATCTCGAGGTTGAAAACTTAATTTTTTTAAAGGAAAATAGAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGGGATTACAGACCAAATTA</pcr_primer_p1>
		<pcr_primer_p2>TGTTCATTCAAGTTTTTGTACTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGTGGGATTACAGACCAAATTAGCGATGTTCCTTTAAAATCTTAAACATTTTCAGTTCGTACAAAGCGGACCCATAAACAACGGACAAATGGGAGTACACACATCCAGACCGGATCAAGTCAACAATGTTTGCGCGTCACAGTGTAGATGGCATTATACTTGATTGGAAAACACTGTATTTGATTGGAATAAATAAAATATTTTCGGGCAATTACGTTTAATTGGAAACAGTACAAAAACTTGAATGAACA</canonical_amplicon>
		<polymorphic_amplicon>AGTGGGATTACAGACCAAATTAGCGATGTTCCTTTAAAATCTTAAACATTTTCAGTTCGTACAAAGCGGACCCATAAACAACGGACAAATGGGAGTACACACATCCAGACCGGATCAAGTCAACAATGTTTGCGCGTCACAGTGTAGATGGCATTATACTTGATTGGAAAACACTGTATTTGATTGGAATAAAYAAAATATTTTCGGGCAATTACGTTTAATTGGAAACAGTACAAAAACTTGAATGAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3587</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>161764</contig_pos>
        <strand>+</strand>
        <context>AGTGTAGATG[A/G]CATTATACTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATCCAGACCGGATCAAGTCAACAATGTTTGCGCGTCACAGTGTAGATG</left_flank>
        <right_flank>CATTATACTTGATTGGAAAACACTGTATTTGATTGGAATAAATAAAATAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGCATGTGAAACAGTAACTACCGTTTCATCTGAATTACATTCGCTGACTAACCAACCAATTTCTAGTCCAATTGAACGTGATCGTGTTTATGGTTCAAAACGGTCAAATCACCACTCGAACCGGAAGAACCACTGGATACGGACCACCAGTTTTCGACAATCAAAACAACATCAACGTATCAATGGCAAATCACTCTGGCTCAACTTTGAATGCTCTCTTTTCTGTTCCATGGAATGTTCGGAATTGTCAAGCTATGAATGTAAGTTGTAGGATTTGTAACAACTAGCTTTGTACTTTGAAACCCATTTAAAAGACAGAAAACATTTAGATTCCAATTTTAAATTGAAGTGGGATTACAGACCAAATTAGCGATGTTCCTTTAAAATCTTAAACATTTTCAGTTCGTACAAAGCGGACCCATAAACAACGGACAAATGGGAGTACACACATCCAGACCGGATCAAGTCAACAATGTTTGCGCGTCACAGTGTAGATGGCATTATACTTGATTGGAAAACACTGTATTTGATTGGAATAAATAAAATATTTTCGGGCAATTACGTTTAATTGGAAACAGTACAAAAACTTGAATGAACAAAAATAATAAAAGAAAAATCTAGATTTCGAAGAAGCACTCTATAGAAAACTATCCTGAATTCTAATGTTTAACACCAGCTTGATTCTAAGAAAATGCTATATCTGAAGGTTGTGAAAAATAATAATTAAAAATTCTAGTTCAAAAATATTTGCCACAGTTAAACATATTTCCCTCCTGAATAGTCTCCGCTCTTTGTGATTTAGCGAGAAAAAAACATCGAAGCAATCGAAGTGAATAAAGTATTTTGGCAATTACTCTTACTATCTATTGGAAACAGTAGAAAAGATAAAGTGATCTCGATGAGAATCAAAGAAGGTTCTAGATTTTTGGAGAAGCTCTCTTTTTTTTAATTCGATCAAAACAGATGATTATCAGTTTGATTTTTGAAGATAACTATAT</canonical>
            <polymorphic>CAAGCATGTGAAACAGTAACTACCGTTTCATCTGAATTACATTCGCTGACTAACCAACCAATTTCTAGTCCAATTGAACGTGATCGTGTTTATGGTTCAAAACGGTCAAATCACCACTCGAACCGGAAGAACCACTGGATACGGACCACCAGTTTTCGACAATCAAAACAACATCAACGTATCAATGGCAAATCACTCTGGCTCAACTTTGAATGCTCTCTTTTCTGTTCCATGGAATGTTCGGAATTGTCAAGCTATGAATGTAAGTTGTAGGATTTGTAACAACTAGCTTTGTACTTTGAAACCCATTTAAAAGACAGAAAACATTTAGATTCCAATTTTAAATTGAAGTGGGATTACAGACCAAATTAGCGATGTTCCTTTAAAATCTTAAACATTTTCAGTTCGTACAAAGCGGACCCATAAACAACGGACAAATGGGAGTACACACATCCAGACCGGATCAAGTCAACAATGTTTGCGCGTCACAGTGTAGATGRCATTATACTTGATTGGAAAACACTGTATTTGATTGGAATAAATAAAATATTTTCGGGCAATTACGTTTAATTGGAAACAGTACAAAAACTTGAATGAACAAAAATAATAAAAGAAAAATCTAGATTTCGAAGAAGCACTCTATAGAAAACTATCCTGAATTCTAATGTTTAACACCAGCTTGATTCTAAGAAAATGCTATATCTGAAGGTTGTGAAAAATAATAATTAAAAATTCTAGTTCAAAAATATTTGCCACAGTTAAACATATTTCCCTCCTGAATAGTCTCCGCTCTTTGTGATTTAGCGAGAAAAAAACATCGAAGCAATCGAAGTGAATAAAGTATTTTGGCAATTACTCTTACTATCTATTGGAAACAGTAGAAAAGATAAAGTGATCTCGATGAGAATCAAAGAAGGTTCTAGATTTTTGGAGAAGCTCTCTTTTTTTTAATTCGATCAAAACAGATGATTATCAGTTTGATTTTTGAAGATAACTATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTAAATTGAAGTGGGATTACA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGTACTGTTTCCAATTAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTAAATTGAAGTGGGATTACAGACCAAATTAGCGATGTTCCTTTAAAATCTTAAACATTTTCAGTTCGTACAAAGCGGACCCATAAACAACGGACAAATGGGAGTACACACATCCAGACCGGATCAAGTCAACAATGTTTGCGCGTCACAGTGTAGATGGCATTATACTTGATTGGAAAACACTGTATTTGATTGGAATAAATAAAATATTTTCGGGCAATTACGTTTAATTGGAAACAGTACAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTAAATTGAAGTGGGATTACAGACCAAATTAGCGATGTTCCTTTAAAATCTTAAACATTTTCAGTTCGTACAAAGCGGACCCATAAACAACGGACAAATGGGAGTACACACATCCAGACCGGATCAAGTCAACAATGTTTGCGCGTCACAGTGTAGATGRCATTATACTTGATTGGAAAACACTGTATTTGATTGGAATAAATAAAATATTTTCGGGCAATTACGTTTAATTGGAAACAGTACAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3588</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>161503</contig_pos>
        <strand>+</strand>
        <context>TCCATGGAAT[G/T]TTCGGAATTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAAATCACTCTGGCTCAACTTTGAATGCTCTCTTTTCTGTTCCATGGAAT</left_flank>
        <right_flank>TTCGGAATTGTCAAGCTATGAATGTAAGTTGTAGGATTTGTAACAACTAG</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCGTGGCGGTGTACAGTGTGGCTATCGTACCCCTTTCCTATAATTCATCGGTCGGCAGCCGACGCTTATGACCACGTAGTTCAGCCTGTAGCGGCAGGGAACCTGAAATATTTTGAGCTGATTTTGACAGTTGTATCTCCTATAAGCTTTTTTAACAGATGAAGCGAAGAAGTAAAAAAATCCGCATATAATGTTTTAGGAATGTTTTTTGGAAGTAACGATTGTTCAACAAGAAGAAACTTATTTTTTCTTAAATATCAAGCATGTGAAACAGTAACTACCGTTTCATCTGAATTACATTCGCTGACTAACCAACCAATTTCTAGTCCAATTGAACGTGATCGTGTTTATGGTTCAAAACGGTCAAATCACCACTCGAACCGGAAGAACCACTGGATACGGACCACCAGTTTTCGACAATCAAAACAACATCAACGTATCAATGGCAAATCACTCTGGCTCAACTTTGAATGCTCTCTTTTCTGTTCCATGGAATGTTCGGAATTGTCAAGCTATGAATGTAAGTTGTAGGATTTGTAACAACTAGCTTTGTACTTTGAAACCCATTTAAAAGACAGAAAACATTTAGATTCCAATTTTAAATTGAAGTGGGATTACAGACCAAATTAGCGATGTTCCTTTAAAATCTTAAACATTTTCAGTTCGTACAAAGCGGACCCATAAACAACGGACAAATGGGAGTACACACATCCAGACCGGATCAAGTCAACAATGTTTGCGCGTCACAGTGTAGATGGCATTATACTTGATTGGAAAACACTGTATTTGATTGGAATAAATAAAATATTTTCGGGCAATTACGTTTAATTGGAAACAGTACAAAAACTTGAATGAACAAAAATAATAAAAGAAAAATCTAGATTTCGAAGAAGCACTCTATAGAAAACTATCCTGAATTCTAATGTTTAACACCAGCTTGATTCTAAGAAAATGCTATATCTGAAGGTTGTGAAAAATAATAATTAAAAATTCTAGT</canonical>
            <polymorphic>TTTTCGTGGCGGTGTACAGTGTGGCTATCGTACCCCTTTCCTATAATTCATCGGTCGGCAGCCGACGCTTATGACCACGTAGTTCAGCCTGTAGCGGCAGGGAACCTGAAATATTTTGAGCTGATTTTGACAGTTGTATCTCCTATAAGCTTTTTTAACAGATGAAGCGAAGAAGTAAAAAAATCCGCATATAATGTTTTAGGAATGTTTTTTGGAAGTAACGATTGTTCAACAAGAAGAAACTTATTTTTTCTTAAATATCAAGCATGTGAAACAGTAACTACCGTTTCATCTGAATTACATTCGCTGACTAACCAACCAATTTCTAGTCCAATTGAACGTGATCGTGTTTATGGTTCAAAACGGTCAAATCACCACTCGAACCGGAAGAACCACTGGATACGGACCACCAGTTTTCGACAATCAAAACAACATCAACGTATCAATGGCAAATCACTCTGGCTCAACTTTGAATGCTCTCTTTTCTGTTCCATGGAATKTTCGGAATTGTCAAGCTATGAATGTAAGTTGTAGGATTTGTAACAACTAGCTTTGTACTTTGAAACCCATTTAAAAGACAGAAAACATTTAGATTCCAATTTTAAATTGAAGTGGGATTACAGACCAAATTAGCGATGTTCCTTTAAAATCTTAAACATTTTCAGTTCGTACAAAGCGGACCCATAAACAACGGACAAATGGGAGTACACACATCCAGACCGGATCAAGTCAACAATGTTTGCGCGTCACAGTGTAGATGGCATTATACTTGATTGGAAAACACTGTATTTGATTGGAATAAATAAAATATTTTCGGGCAATTACGTTTAATTGGAAACAGTACAAAAACTTGAATGAACAAAAATAATAAAAGAAAAATCTAGATTTCGAAGAAGCACTCTATAGAAAACTATCCTGAATTCTAATGTTTAACACCAGCTTGATTCTAAGAAAATGCTATATCTGAAGGTTGTGAAAAATAATAATTAAAAATTCTAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACTAACCAACCAATTTCTAGT</pcr_primer_p1>
		<pcr_primer_p2>CAAAGCTAGTTGTTACAAATCCTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGACTAACCAACCAATTTCTAGTCCAATTGAACGTGATCGTGTTTATGGTTCAAAACGGTCAAATCACCACTCGAACCGGAAGAACCACTGGATACGGACCACCAGTTTTCGACAATCAAAACAACATCAACGTATCAATGGCAAATCACTCTGGCTCAACTTTGAATGCTCTCTTTTCTGTTCCATGGAATGTTCGGAATTGTCAAGCTATGAATGTAAGTTGTAGGATTTGTAACAACTAGCTTTG</canonical_amplicon>
		<polymorphic_amplicon>TGACTAACCAACCAATTTCTAGTCCAATTGAACGTGATCGTGTTTATGGTTCAAAACGGTCAAATCACCACTCGAACCGGAAGAACCACTGGATACGGACCACCAGTTTTCGACAATCAAAACAACATCAACGTATCAATGGCAAATCACTCTGGCTCAACTTTGAATGCTCTCTTTTCTGTTCCATGGAATKTTCGGAATTGTCAAGCTATGAATGTAAGTTGTAGGATTTGTAACAACTAGCTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3589</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>161433</contig_pos>
        <strand></strand>
        <context>ACAATCAAAA[C/T]AACATCAACG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAACCGGAAGAACCACTGGATACGGACCACCAGTTTTCGACAATCAAAA</left_flank>
        <right_flank>AACATCAACGTATCAATGGCAAATCACTCTGGCTCAACTTTGAATGCTCT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCCACAAGTATGATTTTGATGATGCTACAGAAGAATTTTCAAAGTTTTTTTGAAGTGAATATAAAGTTTTTCGTGGCGGTGTACAGTGTGGCTATCGTACCCCTTTCCTATAATTCATCGGTCGGCAGCCGACGCTTATGACCACGTAGTTCAGCCTGTAGCGGCAGGGAACCTGAAATATTTTGAGCTGATTTTGACAGTTGTATCTCCTATAAGCTTTTTTAACAGATGAAGCGAAGAAGTAAAAAAATCCGCATATAATGTTTTAGGAATGTTTTTTGGAAGTAACGATTGTTCAACAAGAAGAAACTTATTTTTTCTTAAATATCAAGCATGTGAAACAGTAACTACCGTTTCATCTGAATTACATTCGCTGACTAACCAACCAATTTCTAGTCCAATTGAACGTGATCGTGTTTATGGTTCAAAACGGTCAAATCACCACTCGAACCGGAAGAACCACTGGATACGGACCACCAGTTTTCGACAATCAAAACAACATCAACGTATCAATGGCAAATCACTCTGGCTCAACTTTGAATGCTCTCTTTTCTGTTCCATGGAATGTTCGGAATTGTCAAGCTATGAATGTAAGTTGTAGGATTTGTAACAACTAGCTTTGTACTTTGAAACCCATTTAAAAGACAGAAAACATTTAGATTCCAATTTTAAATTGAAGTGGGATTACAGACCAAATTAGCGATGTTCCTTTAAAATCTTAAACATTTTCAGTTCGTACAAAGCGGACCCATAAACAACGGACAAATGGGAGTACACACATCCAGACCGGATCAAGTCAACAATGTTTGCGCGTCACAGTGTAGATGGCATTATACTTGATTGGAAAACACTGTATTTGATTGGAATAAATAAAATATTTTCGGGCAATTACGTTTAATTGGAAACAGTACAAAAACTTGAATGAACAAAAATAATAAAAGAAAAATCTAGATTTCGAAGAAGCACTCTATAGAAAACTATCCTGAATTCTAATGTT</canonical>
            <polymorphic>TTTTCCACAAGTATGATTTTGATGATGCTACAGAAGAATTTTCAAAGTTTTTTTGAAGTGAATATAAAGTTTTTCGTGGCGGTGTACAGTGTGGCTATCGTACCCCTTTCCTATAATTCATCGGTCGGCAGCCGACGCTTATGACCACGTAGTTCAGCCTGTAGCGGCAGGGAACCTGAAATATTTTGAGCTGATTTTGACAGTTGTATCTCCTATAAGCTTTTTTAACAGATGAAGCGAAGAAGTAAAAAAATCCGCATATAATGTTTTAGGAATGTTTTTTGGAAGTAACGATTGTTCAACAAGAAGAAACTTATTTTTTCTTAAATATCAAGCATGTGAAACAGTAACTACCGTTTCATCTGAATTACATTCGCTGACTAACCAACCAATTTCTAGTCCAATTGAACGTGATCGTGTTTATGGTTCAAAACGGTCAAATCACCACTCGAACCGGAAGAACCACTGGATACGGACCACCAGTTTTCGACAATCAAAAYAACATCAACGTATCAATGGCAAATCACTCTGGCTCAACTTTGAATGCTCTCTTTTCTGTTCCATGGAATGTTCGGAATTGTCAAGCTATGAATGTAAGTTGTAGGATTTGTAACAACTAGCTTTGTACTTTGAAACCCATTTAAAAGACAGAAAACATTTAGATTCCAATTTTAAATTGAAGTGGGATTACAGACCAAATTAGCGATGTTCCTTTAAAATCTTAAACATTTTCAGTTCGTACAAAGCGGACCCATAAACAACGGACAAATGGGAGTACACACATCCAGACCGGATCAAGTCAACAATGTTTGCGCGTCACAGTGTAGATGGCATTATACTTGATTGGAAAACACTGTATTTGATTGGAATAAATAAAATATTTTCGGGCAATTACGTTTAATTGGAAACAGTACAAAAACTTGAATGAACAAAAATAATAAAAGAAAAATCTAGATTTCGAAGAAGCACTCTATAGAAAACTATCCTGAATTCTAATGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTACCGTTTCATCTGAATTAC</pcr_primer_p1>
		<pcr_primer_p2>CTTACATTCATAGCTTGACAATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACTACCGTTTCATCTGAATTACATTCGCTGACTAACCAACCAATTTCTAGTCCAATTGAACGTGATCGTGTTTATGGTTCAAAACGGTCAAATCACCACTCGAACCGGAAGAACCACTGGATACGGACCACCAGTTTTCGACAATCAAAACAACATCAACGTATCAATGGCAAATCACTCTGGCTCAACTTTGAATGCTCTCTTTTCTGTTCCATGGAATGTTCGGAATTGTCAAGCTATGAATGTAAG</canonical_amplicon>
		<polymorphic_amplicon>AACTACCGTTTCATCTGAATTACATTCGCTGACTAACCAACCAATTTCTAGTCCAATTGAACGTGATCGTGTTTATGGTTCAAAACGGTCAAATCACCACTCGAACCGGAAGAACCACTGGATACGGACCACCAGTTTTCGACAATCAAAAYAACATCAACGTATCAATGGCAAATCACTCTGGCTCAACTTTGAATGCTCTCTTTTCTGTTCCATGGAATGTTCGGAATTGTCAAGCTATGAATGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3598</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>161350</contig_pos>
        <strand></strand>
        <context>GAACGTGATC[G/A]RGTTTATGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTACATTCGCTGACTAACCAACCAATTTCTAGTCCAATTGAACGTGATC</left_flank>
        <right_flank>TGTTTATGGTTCAAAACGGTCAAATCACCACTCGAACCGGAAGAACCACT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAAATTTTCAAAAAGCAGGCCGGCTCGCGGGCCGTCCATGTGTAATTTTTTTCCGGCCCGGCCCGGCCCGGTCCGGCCATCTTTTCCACAAGTATGATTTTGATGATGCTACAGAAGAATTTTCAAAGTTTTTTTGAAGTGAATATAAAGTTTTTCGTGGCGGTGTACAGTGTGGCTATCGTACCCCTTTCCTATAATTCATCGGTCGGCAGCCGACGCTTATGACCACGTAGTTCAGCCTGTAGCGGCAGGGAACCTGAAATATTTTGAGCTGATTTTGACAGTTGTATCTCCTATAAGCTTTTTTAACAGATGAAGCGAAGAAGTAAAAAAATCCGCATATAATGTTTTAGGAATGTTTTTTGGAAGTAACGATTGTTCAACAAGAAGAAACTTATTTTTTCTTAAATATCAAGCATGTGAAACAGTAACTACCGTTTCATCTGAATTACATTCGCTGACTAACCAACCAATTTCTAGTCCAATTGAACGTGATCGTGTTTATGGTTCAAAACGGTCAAATCACCACTCGAACCGGAAGAACCACTGGATACGGACCACCAGTTTTCGACAATCAAAACAACATCAACGTATCAATGGCAAATCACTCTGGCTCAACTTTGAATGCTCTCTTTTCTGTTCCATGGAATGTTCGGAATTGTCAAGCTATGAATGTAAGTTGTAGGATTTGTAACAACTAGCTTTGTACTTTGAAACCCATTTAAAAGACAGAAAACATTTAGATTCCAATTTTAAATTGAAGTGGGATTACAGACCAAATTAGCGATGTTCCTTTAAAATCTTAAACATTTTCAGTTCGTACAAAGCGGACCCATAAACAACGGACAAATGGGAGTACACACATCCAGACCGGATCAAGTCAACAATGTTTGCGCGTCACAGTGTAGATGGCATTATACTTGATTGGAAAACACTGTATTTGATTGGAATAAATAAAATATTTTCGGGCAATTACGTTTAATTGGAAACAGTACAAA</canonical>
            <polymorphic>TCGAAATTTTCAAAAAGCAGGCCGGCTCGCGGGCCGTCCATGTGTAATTTTTTTCCGGCCCGGCCCGGCCCGGTCCGGCCATCTTTTCCACAAGTATGATTTTGATGATGCTACAGAAGAATTTTCAAAGTTTTTTTGAAGTGAATATAAAGTTTTTCGTGGCGGTGTACAGTGTGGCTATCGTACCCCTTTCCTATAATTCATCGGTCGGCAGCCGACGCTTATGACCACGTAGTTCAGCCTGTAGCGGCAGGGAACCTGAAATATTTTGAGCTGATTTTGACAGTTGTATCTCCTATAAGCTTTTTTAACAGATGAAGCGAAGAAGTAAAAAAATCCGCATATAATGTTTTAGGAATGTTTTTTGGAAGTAACGATTGTTCAACAAGAAGAAACTTATTTTTTCTTAAATATCAAGCATGTGAAACAGTAACTACCGTTTCATCTGAATTACATTCGCTGACTAACCAACCAATTTCTAGTCCAATTGAACGTGATCRTGTTTATGGTTCAAAACGGTCAAATCACCACTCGAACCGGAAGAACCACTGGATACGGACCACCAGTTTTCGACAATCAAAACAACATCAACGTATCAATGGCAAATCACTCTGGCTCAACTTTGAATGCTCTCTTTTCTGTTCCATGGAATGTTCGGAATTGTCAAGCTATGAATGTAAGTTGTAGGATTTGTAACAACTAGCTTTGTACTTTGAAACCCATTTAAAAGACAGAAAACATTTAGATTCCAATTTTAAATTGAAGTGGGATTACAGACCAAATTAGCGATGTTCCTTTAAAATCTTAAACATTTTCAGTTCGTACAAAGCGGACCCATAAACAACGGACAAATGGGAGTACACACATCCAGACCGGATCAAGTCAACAATGTTTGCGCGTCACAGTGTAGATGGCATTATACTTGATTGGAAAACACTGTATTTGATTGGAATAAATAAAATATTTTCGGGCAATTACGTTTAATTGGAAACAGTACAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>194 158 95 72 64 54 53 47 46 44 38 29 25 18 18 14 7 6 6 5 3 2 2</canonical_bands>
                <polymorphic_bands>194 158 95 72 64 54 53 47 46 44 38 31 29 18 18 14 7 6 5 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTACCGTTTCATCTGAATTAC</pcr_primer_p1>
		<pcr_primer_p2>CTTACATTCATAGCTTGACAATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACTACCGTTTCATCTGAATTACATTCGCTGACTAACCAACCAATTTCTAGTCCAATTGAACGTGATCGTGTTTATGGTTCAAAACGGTCAAATCACCACTCGAACCGGAAGAACCACTGGATACGGACCACCAGTTTTCGACAATCAAAACAACATCAACGTATCAATGGCAAATCACTCTGGCTCAACTTTGAATGCTCTCTTTTCTGTTCCATGGAATGTTCGGAATTGTCAAGCTATGAATGTAAG</canonical_amplicon>
		<polymorphic_amplicon>AACTACCGTTTCATCTGAATTACATTCGCTGACTAACCAACCAATTTCTAGTCCAATTGAACGTGATCRTGTTTATGGTTCAAAACGGTCAAATCACCACTCGAACCGGAAGAACCACTGGATACGGACCACCAGTTTTCGACAATCAAAACAACATCAACGTATCAATGGCAAATCACTCTGGCTCAACTTTGAATGCTCTCTTTTCTGTTCCATGGAATGTTCGGAATTGTCAAGCTATGAATGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3599</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>195959</contig_pos>
        <strand>+</strand>
        <context>CTTCCAGAAT[G/T]ATTTTTACGC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCTTCTTCTTCTGAAAAATCCAAAATTTCGGAAACAGAAACTTCCAGAAT</left_flank>
        <right_flank>ATTTTTACGCGGAATTCGAAACTTGTTGTATCCTGTTCCATTGAGCAGTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCTGACTCGATAGTTCACCATAACCGTTCCGTTAGGGAATAACATCAGGAATACACTCCTGGAATATTATATCTTTTTTCTGTTTCAATTGCAAGGTTAGTATGAGTGAATAATTTACTTCTTCAATGCTACTACAATGGCATCTTTTTTTTTTACCTGAACGGAGAATTATGAATTTGAGCCACTTTGCTGTTAATGAAGCAACTGTTCGGTGTCCACAGTCTATCCAATACTTGATGATTCAGTGAAAGATTTCCTGAAATCAGTTTTTATTATTTTCAAGCGTTTCTAGAATTTTCCAACCTACCTTTACAGGGACTCATATGCTGAAAATTCAAAGCTGGATCCAACCAAGTCTCGGTTATATAAATATCCATATCAAAGTCATTCGTCAACTCATCGATTGACGTAATCGCTTGAATCCATATCTCCACGACTACAGTCATTCCTTCTTCTTCTGAAAAATCCAAAATTTCGGAAACAGAAACTTCCAGAATTATTTTTACGCGGAATTCGAAACTTGTTGTATCCTGTTCCATTGAGCAGTCTATCAATGATATCAGTGTCTCGAGTGCAGTTTAGTTTTCGAGGTTTGAAGGACTTGTGATCGAGATGAGATGGTGATAAAGAAGAGGAAGAGGATACTGAAAAAATTACAGTTTCTAAAATGTTTAGTAAACTGTTTAATTGATAATATTGTAATGAAACTTGCTCAATTTTGGTTTAAAAAAAAACATTCAAAAGGTACCTTGGAATTCAAAAGGTACCTTGGAACAATAGAAGGGCCGGCCCTTCTAATACAGGTTTTACAGTAACACCAACATATACTATAATTCTTCATTAGAAGAAGCGGTCTTTCTTTTTTTTTTCTTCATAAAACTGCATACATTTTAACGAAATTTATCATGTTTTTAAGCAAAAAAGAGCGTTTTAACCGATATTTGGAATATTTTTCACATTTTTGACGAAGCTCCTCTATGAAAGGAGCTTTTCTTTTA</canonical>
            <polymorphic>ACTCTGACTCGATAGTTCACCATAACCGTTCCGTTAGGGAATAACATCAGGAATACACTCCTGGAATATTATATCTTTTTTCTGTTTCAATTGCAAGGTTAGTATGAGTGAATAATTTACTTCTTCAATGCTACTACAATGGCATCTTTTTTTTTTACCTGAACGGAGAATTATGAATTTGAGCCACTTTGCTGTTAATGAAGCAACTGTTCGGTGTCCACAGTCTATCCAATACTTGATGATTCAGTGAAAGATTTCCTGAAATCAGTTTTTATTATTTTCAAGCGTTTCTAGAATTTTCCAACCTACCTTTACAGGGACTCATATGCTGAAAATTCAAAGCTGGATCCAACCAAGTCTCGGTTATATAAATATCCATATCAAAGTCATTCGTCAACTCATCGATTGACGTAATCGCTTGAATCCATATCTCCACGACTACAGTCATTCCTTCTTCTTCTGAAAAATCCAAAATTTCGGAAACAGAAACTTCCAGAATKATTTTTACGCGGAATTCGAAACTTGTTGTATCCTGTTCCATTGAGCAGTCTATCAATGATATCAGTGTCTCGAGTGCAGTTTAGTTTTCGAGGTTTGAAGGACTTGTGATCGAGATGAGATGGTGATAAAGAAGAGGAAGAGGATACTGAAAAAATTACAGTTTCTAAAATGTTTAGTAAACTGTTTAATTGATAATATTGTAATGAAACTTGCTCAATTTTGGTTTAAAAAAAAACATTCAAAAGGTACCTTGGAATTCAAAAGGTACCTTGGAACAATAGAAGGGCCGGCCCTTCTAATACAGGTTTTACAGTAACACCAACATATACTATAATTCTTCATTAGAAGAAGCGGTCTTTCTTTTTTTTTTCTTCATAAAACTGCATACATTTTAACGAAATTTATCATGTTTTTAAGCAAAAAAGAGCGTTTTAACCGATATTTGGAATATTTTTCACATTTTTGACGAAGCTCCTCTATGAAAGGAGCTTTTCTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>141 139 119 101 88 78 66 55 39 39 34 29 25 24 16 7</canonical_bands>
                <polymorphic_bands>141 139 119 101 88 78 66 55 40 39 39 34 29 25 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAATCGCTTGAATCCATATCT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCAGTATCCTCTTCCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GTAATCGCTTGAATCCATATCTCCACGACTACAGTCATTCCTTCTTCTTCTGAAAAATCCAAAATTTCGGAAACAGAAACTTCCAGAATTATTTTTACGCGGAATTCGAAACTTGTTGTATCCTGTTCCATTGAGCAGTCTATCAATGATATCAGTGTCTCGAGTGCAGTTTAGTTTTCGAGGTTTGAAGGACTTGTGATCGAGATGAGATGGTGATAAAGAAGAGGAAGAGGATACTGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTAATCGCTTGAATCCATATCTCCACGACTACAGTCATTCCTTCTTCTTCTGAAAAATCCAAAATTTCGGAAACAGAAACTTCCAGAATKATTTTTACGCGGAATTCGAAACTTGTTGTATCCTGTTCCATTGAGCAGTCTATCAATGATATCAGTGTCTCGAGTGCAGTTTAGTTTTCGAGGTTTGAAGGACTTGTGATCGAGATGAGATGGTGATAAAGAAGAGGAAGAGGATACTGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3600</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>198274</contig_pos>
        <strand>+</strand>
        <context>AAAGAGGAAG[C/G]ACATATATGT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAATGGATATTTAAGAGTGTTCCATAAGAAAATTTACAAAAAAGAGGAAG</left_flank>
        <right_flank>ACATATATGTCAATGTGTCAATTCGATACGAAAACTAATGAAAAAAGAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTTGAAGACGAAACAGAAAATATTTTTGCTTCTCTGTATAGGAAACGATAAGGCTTATCGTTATTTGTTTTTGAATTGCCTGAGAAATTACCGTAACCACCCTGGAAATTTCATAAAACTGATGGAACTGAATCGGAAAAAAATAGAAATGTTTAGCTTTAATGAAAAAACTTAATCAAACAGTAATTTTTGATACTAGTTTCTAATTGATTATTTCAGATGTTTTATCGTTCGAATACATAAAAAGGTATCGGAAGCAAAAACTGAAATTGAGAATTCAATAAAAGGATTCTCTATTTTACATTCCAAAAATATGAAATTCTTACCCAACTCTGCCGAATTCACCAATTCCGAGTAGTCCAATTCTGAAGTGATAATGAGAACGGGTAGAGTTGATAATAGAGTAAATATCATCTGAAAATCGGAAATTCAAAAGATTTTTTTTGCAAATGGATATTTAAGAGTGTTCCATAAGAAAATTTACAAAAAAGAGGAAGGACATATATGTCAATGTGTCAATTCGATACGAAAACTAATGAAAAAAGAAGATTCTTTGAATAAAAAAAGATCAGTGGTGACTAAATTTTCCTTACAAGGTTAGGGAGCTTCAAAATTTATATGTATTATCTCGTTTCTACCACTGGAGGATTAAAAAACATGTTGATGAAGTTAGTTTAATGGACTTCATAAAACAGAAAATTCAATAAAGTAAACGCATTCGAAAAGAGGAATAGCCCCTCACATGCATCGGTCATCGGAAATGAGAAATATGAGGTCATGATTTGAAAAGGAAGAAAAATATGGAAAAAGAGAAATGGAGTTTTAGAATAAAGACCAAAAAGCTTGGAAATGAGCTTTTTTGATTATTTTTAATTCAATTCTTAATCTATGATGTTAAATACCAAGAACTAATTCAAATTGAATTATTCTCTATTTGAAACCAAAAAAATAGGTTATCCCATTTTCAAAGATTGATTTGCAAGGGAAACTTTTGCTAA</canonical>
            <polymorphic>AAGTTGAAGACGAAACAGAAAATATTTTTGCTTCTCTGTATAGGAAACGATAAGGCTTATCGTTATTTGTTTTTGAATTGCCTGAGAAATTACCGTAACCACCCTGGAAATTTCATAAAACTGATGGAACTGAATCGGAAAAAAATAGAAATGTTTAGCTTTAATGAAAAAACTTAATCAAACAGTAATTTTTGATACTAGTTTCTAATTGATTATTTCAGATGTTTTATCGTTCGAATACATAAAAAGGTATCGGAAGCAAAAACTGAAATTGAGAATTCAATAAAAGGATTCTCTATTTTACATTCCAAAAATATGAAATTCTTACCCAACTCTGCCGAATTCACCAATTCCGAGTAGTCCAATTCTGAAGTGATAATGAGAACGGGTAGAGTTGATAATAGAGTAAATATCATCTGAAAATCGGAAATTCAAAAGATTTTTTTTGCAAATGGATATTTAAGAGTGTTCCATAAGAAAATTTACAAAAAAGAGGAAGSACATATATGTCAATGTGTCAATTCGATACGAAAACTAATGAAAAAAGAAGATTCTTTGAATAAAAAAAGATCAGTGGTGACTAAATTTTCCTTACAAGGTTAGGGAGCTTCAAAATTTATATGTATTATCTCGTTTCTACCACTGGAGGATTAAAAAACATGTTGATGAAGTTAGTTTAATGGACTTCATAAAACAGAAAATTCAATAAAGTAAACGCATTCGAAAAGAGGAATAGCCCCTCACATGCATCGGTCATCGGAAATGAGAAATATGAGGTCATGATTTGAAAAGGAAGAAAAATATGGAAAAAGAGAAATGGAGTTTTAGAATAAAGACCAAAAAGCTTGGAAATGAGCTTTTTTGATTATTTTTAATTCAATTCTTAATCTATGATGTTAAATACCAAGAACTAATTCAAATTGAATTATTCTCTATTTGAAACCAAAAAAATAGGTTATCCCATTTTCAAAGATTGATTTGCAAGGGAAACTTTTGCTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNNNNGTC</site>
                <isoschizomers>
                    <enzyme>AasI</enzyme>
                    <enzyme>DrdI</enzyme>
                    <enzyme>DseDI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTCCAATTCTGAAGTGATAATG</pcr_primer_p1>
		<pcr_primer_p2>CCTAACCTTGTAAGGAAAATTTAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGTCCAATTCTGAAGTGATAATGAGAACGGGTAGAGTTGATAATAGAGTAAATATCATCTGAAAATCGGAAATTCAAAAGATTTTTTTTGCAAATGGATATTTAAGAGTGTTCCATAAGAAAATTTACAAAAAAGAGGAAGGACATATATGTCAATGTGTCAATTCGATACGAAAACTAATGAAAAAAGAAGATTCTTTGAATAAAAAAAGATCAGTGGTGACTAAATTTTCCTTACAAGGTTAGG</canonical_amplicon>
		<polymorphic_amplicon>AGTCCAATTCTGAAGTGATAATGAGAACGGGTAGAGTTGATAATAGAGTAAATATCATCTGAAAATCGGAAATTCAAAAGATTTTTTTTGCAAATGGATATTTAAGAGTGTTCCATAAGAAAATTTACAAAAAAGAGGAAGSACATATATGTCAATGTGTCAATTCGATACGAAAACTAATGAAAAAAGAAGATTCTTTGAATAAAAAAAGATCAGTGGTGACTAAATTTTCCTTACAAGGTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3601</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>198041</contig_pos>
        <strand>+</strand>
        <context>AAGCAAAAAC[A/T]GAAATTGAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCAGATGTTTTATCGTTCGAATACATAAAAAGGTATCGGAAGCAAAAAC</left_flank>
        <right_flank>GAAATTGAGAATTCAATAAAAGGATTCTCTATTTTACATTCCAAAAATAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCCGTTATCATCTTACATGCTCGATGTAAGCGCAAGTAAAATCCGAACTGGTATTATTGTTTTACGTCTAATACTTTATCTTAAAAATCAAATTGATGTTCTGAAAAATTTAGATTTTTAGGTCTGAAATTTAGGGTTCTGAAAATGTAGAAAAACCAAAAATGTCCGAATGTAAAAAAAAACATTTTTTGGATGTACGGAGAATTCCAGAGTCCTAGCTGTCTGGATTTTAAGTTGAAGACGAAACAGAAAATATTTTTGCTTCTCTGTATAGGAAACGATAAGGCTTATCGTTATTTGTTTTTGAATTGCCTGAGAAATTACCGTAACCACCCTGGAAATTTCATAAAACTGATGGAACTGAATCGGAAAAAAATAGAAATGTTTAGCTTTAATGAAAAAACTTAATCAAACAGTAATTTTTGATACTAGTTTCTAATTGATTATTTCAGATGTTTTATCGTTCGAATACATAAAAAGGTATCGGAAGCAAAAACTGAAATTGAGAATTCAATAAAAGGATTCTCTATTTTACATTCCAAAAATATGAAATTCTTACCCAACTCTGCCGAATTCACCAATTCCGAGTAGTCCAATTCTGAAGTGATAATGAGAACGGGTAGAGTTGATAATAGAGTAAATATCATCTGAAAATCGGAAATTCAAAAGATTTTTTTTGCAAATGGATATTTAAGAGTGTTCCATAAGAAAATTTACAAAAAAGAGGAAGGACATATATGTCAATGTGTCAATTCGATACGAAAACTAATGAAAAAAGAAGATTCTTTGAATAAAAAAAGATCAGTGGTGACTAAATTTTCCTTACAAGGTTAGGGAGCTTCAAAATTTATATGTATTATCTCGTTTCTACCACTGGAGGATTAAAAAACATGTTGATGAAGTTAGTTTAATGGACTTCATAAAACAGAAAATTCAATAAAGTAAACGCATTCGAAAAGAGGAATAGCCCCTCACATGCATCGGTCATCGGAAATGAG</canonical>
            <polymorphic>CAGCCGTTATCATCTTACATGCTCGATGTAAGCGCAAGTAAAATCCGAACTGGTATTATTGTTTTACGTCTAATACTTTATCTTAAAAATCAAATTGATGTTCTGAAAAATTTAGATTTTTAGGTCTGAAATTTAGGGTTCTGAAAATGTAGAAAAACCAAAAATGTCCGAATGTAAAAAAAAACATTTTTTGGATGTACGGAGAATTCCAGAGTCCTAGCTGTCTGGATTTTAAGTTGAAGACGAAACAGAAAATATTTTTGCTTCTCTGTATAGGAAACGATAAGGCTTATCGTTATTTGTTTTTGAATTGCCTGAGAAATTACCGTAACCACCCTGGAAATTTCATAAAACTGATGGAACTGAATCGGAAAAAAATAGAAATGTTTAGCTTTAATGAAAAAACTTAATCAAACAGTAATTTTTGATACTAGTTTCTAATTGATTATTTCAGATGTTTTATCGTTCGAATACATAAAAAGGTATCGGAAGCAAAAACWGAAATTGAGAATTCAATAAAAGGATTCTCTATTTTACATTCCAAAAATATGAAATTCTTACCCAACTCTGCCGAATTCACCAATTCCGAGTAGTCCAATTCTGAAGTGATAATGAGAACGGGTAGAGTTGATAATAGAGTAAATATCATCTGAAAATCGGAAATTCAAAAGATTTTTTTTGCAAATGGATATTTAAGAGTGTTCCATAAGAAAATTTACAAAAAAGAGGAAGGACATATATGTCAATGTGTCAATTCGATACGAAAACTAATGAAAAAAGAAGATTCTTTGAATAAAAAAAGATCAGTGGTGACTAAATTTTCCTTACAAGGTTAGGGAGCTTCAAAATTTATATGTATTATCTCGTTTCTACCACTGGAGGATTAAAAAACATGTTGATGAAGTTAGTTTAATGGACTTCATAAAACAGAAAATTCAATAAAGTAAACGCATTCGAAAAGAGGAATAGCCCCTCACATGCATCGGTCATCGGAAATGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATAAAACTGATGGAACTGAAT</pcr_primer_p1>
		<pcr_primer_p2>GACTACTCGGAATTGGTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCATAAAACTGATGGAACTGAATCGGAAAAAAATAGAAATGTTTAGCTTTAATGAAAAAACTTAATCAAACAGTAATTTTTGATACTAGTTTCTAATTGATTATTTCAGATGTTTTATCGTTCGAATACATAAAAAGGTATCGGAAGCAAAAACTGAAATTGAGAATTCAATAAAAGGATTCTCTATTTTACATTCCAAAAATATGAAATTCTTACCCAACTCTGCCGAATTCACCAATTCCGAGTAGTC</canonical_amplicon>
		<polymorphic_amplicon>TCATAAAACTGATGGAACTGAATCGGAAAAAAATAGAAATGTTTAGCTTTAATGAAAAAACTTAATCAAACAGTAATTTTTGATACTAGTTTCTAATTGATTATTTCAGATGTTTTATCGTTCGAATACATAAAAAGGTATCGGAAGCAAAAACWGAAATTGAGAATTCAATAAAAGGATTCTCTATTTTACATTCCAAAAATATGAAATTCTTACCCAACTCTGCCGAATTCACCAATTCCGAGTAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3602</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>380906</contig_pos>
        <strand></strand>
        <context>AACGCATGGG[C/G]ASGACTTCCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTGAGAATCTTCACCACAAAAAATTCCAAACCCATTTTGAAACGCATGGG</left_flank>
        <right_flank>AAGACTTCCCGTTTGTGTCAGCAAACAGTCGAAAAAAGACAGAAAGAAAT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATTGATTTAAAAATTGAAAAACCTTAAAAATTCGCTTCAAAAGGCGACAAATCTCAATTCCTGTCTACTTCTGGAATAAATTTTTGAATTATCACTAAAACTGAAAATTCTAGGCCACTTATGTAAATGTGTCAGAAATGATTAACGGTGAGTTTTCAGTATTGGCGGGAATGCAAAAAAAGATTCCAGAACCTTCGGAAAAGAGACGAGAACTGAAATTGTTTGGTTTTTTACTTTTTGAGCAATTTTTGCTTCTAGAACTTACTCTAGCCAATCCAATTTCAATCATTCTGATTGATTTTCAATCATTCTGATTGATTTTCAATCATTCTGATTGATTTTGAAATCATCTAGAAATCAAAAACAATCTTTCTTATCACACTGTTTCAAATCTTGGATTCCTCATCTTCCAGCTCCTCTTCCAACTTTTACGATCCATTCTTCAGTGAGAATCTTCACCACAAAAAATTCCAAACCCATTTTGAAACGCATGGGCAAGACTTCCCGTTTGTGTCAGCAAACAGTCGAAAAAAGACAGAAAGAAATGAGTCAGAGTGTCGAAAATATTAACGGCACGAGAGGCGACGACGACGACACAGCATTGTTTTTTGGGGGGTGTTTTCAGCAGCATTTCTCTTGTTTTTCTTTGTTCTGTTTTAAAAAGCAAAGAGTACGATTTTATTCACTTCAGTCAGTAGGTTCGATTTTCAGGGTTCAGTTGTTTAGAGGGCTCAAATTTTAGATATTTTAAGAGTCGTCATGACATCAATTGGGTAGTCAACTAGAAAAGGGCAAATTTTTGATTTTTTGAATATCGTCATTTTTCGGATATTTTCGGATAAACAACAGATTTCTAATGTTTCGTAAGAGATCTGGGAAAATATGTGTCAACAAATCGGTGCCACGTGGGACTAAATTTTGTACAGACTATCAGCAAACTGATGCACCTTCGGCGCGATTTAACCTAGTTGTTTATTGGCCCGTCGCTTCGCTTCT</canonical>
            <polymorphic>AAAAATTGATTTAAAAATTGAAAAACCTTAAAAATTCGCTTCAAAAGGCGACAAATCTCAATTCCTGTCTACTTCTGGAATAAATTTTTGAATTATCACTAAAACTGAAAATTCTAGGCCACTTATGTAAATGTGTCAGAAATGATTAACGGTGAGTTTTCAGTATTGGCGGGAATGCAAAAAAAGATTCCAGAACCTTCGGAAAAGAGACGAGAACTGAAATTGTTTGGTTTTTTACTTTTTGAGCAATTTTTGCTTCTAGAACTTACTCTAGCCAATCCAATTTCAATCATTCTGATTGATTTTCAATCATTCTGATTGATTTTCAATCATTCTGATTGATTTTGAAATCATCTAGAAATCAAAAACAATCTTTCTTATCACACTGTTTCAAATCTTGGATTCCTCATCTTCCAGCTCCTCTTCCAACTTTTACGATCCATTCTTCAGTGAGAATCTTCACCACAAAAAATTCCAAACCCATTTTGAAACGCATGGGSAAGACTTCCCGTTTGTGTCAGCAAACAGTCGAAAAAAGACAGAAAGAAATGAGTCAGAGTGTCGAAAATATTAACGGCACGAGAGGCGACGACGACGACACAGCATTGTTTTTTGGGGGGTGTTTTCAGCAGCATTTCTCTTGTTTTTCTTTGTTCTGTTTTAAAAAGCAAAGAGTACGATTTTATTCACTTCAGTCAGTAGGTTCGATTTTCAGGGTTCAGTTGTTTAGAGGGCTCAAATTTTAGATATTTTAAGAGTCGTCATGACATCAATTGGGTAGTCAACTAGAAAAGGGCAAATTTTTGATTTTTTGAATATCGTCATTTTTCGGATATTTTCGGATAAACAACAGATTTCTAATGTTTCGTAAGAGATCTGGGAAAATATGTGTCAACAAATCGGTGCCACGTGGGACTAAATTTTGTACAGACTATCAGCAAACTGATGCACCTTCGGCGCGATTTAACCTAGTTGTTTATTGGCCCGTCGCTTCGCTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGAGAATCTTCACCACAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTGACTGAAGTGAATAAAATCGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGAGAATCTTCACCACAAAAAATTCCAAACCCATTTTGAAACGCATGGGCAAGACTTCCCGTTTGTGTCAGCAAACAGTCGAAAAAAGACAGAAAGAAATGAGTCAGAGTGTCGAAAATATTAACGGCACGAGAGGCGACGACGACGACACAGCATTGTTTTTTGGGGGGTGTTTTCAGCAGCATTTCTCTTGTTTTTCTTTGTTCTGTTTTAAAAAGCAAAGAGTACGATTTTATTCACTTCAGTCAG</canonical_amplicon>
		<polymorphic_amplicon>GTGAGAATCTTCACCACAAAAAATTCCAAACCCATTTTGAAACGCATGGGSAAGACTTCCCGTTTGTGTCAGCAAACAGTCGAAAAAAGACAGAAAGAAATGAGTCAGAGTGTCGAAAATATTAACGGCACGAGAGGCGACGACGACGACACAGCATTGTTTTTTGGGGGGTGTTTTCAGCAGCATTTCTCTTGTTTTTCTTTGTTCTGTTTTAAAAAGCAAAGAGTACGATTTTATTCACTTCAGTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3603</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>381995</contig_pos>
        <strand>+</strand>
        <context>TCGAGCAACA[C/G]GTGTCCCAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGTACTTTTTCGAGTAGCGCAGCTGCTCATTGTGACAGTCTCGAGCAACA</left_flank>
        <right_flank>GTGTCCCAGAGGGGCGGAGCTTATCATATTTTACAATTTTTTGCCTCTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTTTTATATGTTATCTATTCAAAATAATCGCGCGAGTGAACGAGTAAAAATGTCTGCGTCTTTACAGCGCCTCTACATAAATAAACGTACAGTAATCAGGGGATCCCACAAAACCTGGGAAAAAATTGGGCGGAACTTAGAAAATGTGAAAAAATACCCAAATATAGCAATTTTGGCACTGAAAATATTCAGTTTTTAGGTCGATAAGTTGTCAAAATTTTTATTTAATTTTTGTTTGGTTTTACTGATCCTTTAATTTTTTCCGATTTTTCTAGGTATTTTTTCAAATGTTTTCTTCAAATTTTCCAATTTTTGATCTACCCAAACGGCAACCATTTTCCTAGACAGATTTTTTGTCTTTTTCATTTTTCTCTGTCCCATCTGTATCATTTCGTACCAATCACCTCTTCAAGACGCACAGCTGCATCTCTTCTTTTTTTCTCTGAAATGTACTTTTTCGAGTAGCGCAGCTGCTCATTGTGACAGTCTCGAGCAACAGGTGTCCCAGAGGGGCGGAGCTTATCATATTTTACAATTTTTTGCCTCTTCAAACTCTTGAAAATCTTCATATTTTCCTATTTTTAAGAAAAAAAAATTTTCTAGCTTTTTCCCTCGCCATCCATCGGTCCTCCAGAGCGACGACGTCAAGTCCGACAACATAATAAATCCACGTCGTCATCATGCGGGAGTACAAAATCGTCGTTTTGGGATCGGGAGGAGTCGGAAAGTCGGCGTTGACCGTGCAGTTTGTTCAAGGCATTTTCGTCGAGAAGTACGATCCAACGATTGAGGACAGCTACAGAAAAGTGAGTGGCGCTTCTAGAATCTTCTAGAAGCTTTGTGATTCGGCGGGAATTTAAAAAAAAGAAAAGAAAAATAGCATTTTGCTGCGGCCGCAACAGCCAAAAACTCTCGATTTTTCTAGGTCATTTGCTTGTCCACGTAGATTCCTTAGCCAGCTAATAGAGATCCTTGTCGTAAATACCAGGCGCCTTTAAC</canonical>
            <polymorphic>CGTTTTATATGTTATCTATTCAAAATAATCGCGCGAGTGAACGAGTAAAAATGTCTGCGTCTTTACAGCGCCTCTACATAAATAAACGTACAGTAATCAGGGGATCCCACAAAACCTGGGAAAAAATTGGGCGGAACTTAGAAAATGTGAAAAAATACCCAAATATAGCAATTTTGGCACTGAAAATATTCAGTTTTTAGGTCGATAAGTTGTCAAAATTTTTATTTAATTTTTGTTTGGTTTTACTGATCCTTTAATTTTTTCCGATTTTTCTAGGTATTTTTTCAAATGTTTTCTTCAAATTTTCCAATTTTTGATCTACCCAAACGGCAACCATTTTCCTAGACAGATTTTTTGTCTTTTTCATTTTTCTCTGTCCCATCTGTATCATTTCGTACCAATCACCTCTTCAAGACGCACAGCTGCATCTCTTCTTTTTTTCTCTGAAATGTACTTTTTCGAGTAGCGCAGCTGCTCATTGTGACAGTCTCGAGCAACASGTGTCCCAGAGGGGCGGAGCTTATCATATTTTACAATTTTTTGCCTCTTCAAACTCTTGAAAATCTTCATATTTTCCTATTTTTAAGAAAAAAAAATTTTCTAGCTTTTTCCCTCGCCATCCATCGGTCCTCCAGAGCGACGACGTCAAGTCCGACAACATAATAAATCCACGTCGTCATCATGCGGGAGTACAAAATCGTCGTTTTGGGATCGGGAGGAGTCGGAAAGTCGGCGTTGACCGTGCAGTTTGTTCAAGGCATTTTCGTCGAGAAGTACGATCCAACGATTGAGGACAGCTACAGAAAAGTGAGTGGCGCTTCTAGAATCTTCTAGAAGCTTTGTGATTCGGCGGGAATTTAAAAAAAAGAAAAGAAAAATAGCATTTTGCTGCGGCCGCAACAGCCAAAAACTCTCGATTTTTCTAGGTCATTTGCTTGTCCACGTAGATTCCTTAGCCAGCTAATAGAGATCCTTGTCGTAAATACCAGGCGCCTTTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGCTGCATCTCTTCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTATTATGTTGTCGGACTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACAGCTGCATCTCTTCTTTTTTTCTCTGAAATGTACTTTTTCGAGTAGCGCAGCTGCTCATTGTGACAGTCTCGAGCAACAGGTGTCCCAGAGGGGCGGAGCTTATCATATTTTACAATTTTTTGCCTCTTCAAACTCTTGAAAATCTTCATATTTTCCTATTTTTAAGAAAAAAAAATTTTCTAGCTTTTTCCCTCGCCATCCATCGGTCCTCCAGAGCGACGACGTCAAGTCCGACAACATAATAAAT</canonical_amplicon>
		<polymorphic_amplicon>ACAGCTGCATCTCTTCTTTTTTTCTCTGAAATGTACTTTTTCGAGTAGCGCAGCTGCTCATTGTGACAGTCTCGAGCAACASGTGTCCCAGAGGGGCGGAGCTTATCATATTTTACAATTTTTTGCCTCTTCAAACTCTTGAAAATCTTCATATTTTCCTATTTTTAAGAAAAAAAAATTTTCTAGCTTTTTCCCTCGCCATCCATCGGTCCTCCAGAGCGACGACGTCAAGTCCGACAACATAATAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3604</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>384327</contig_pos>
        <strand>+</strand>
        <context>TATATACTAT[C/T]CACCTTCTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATATATTCATTTATCTGCACAACATGTTAAAAATAATTTATATACTAT</left_flank>
        <right_flank>CACCTTCTTTTTGAAATTCACACAAGGTATTCCCCCTTCTTTTCCGTTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTAAATCGATCTAGAAATTACGCCAAATGAATATCGGGTCATTTCTAGGTCATACAAGTTCCTAGAAAAGTGAAAGTGTCCTAGAAAAGTGAAATTGCAAAGTTAGGCCACCATGTTAAATAACCTAAAACAGATGAGCTGCATGTTAGAACAATTCTGGACCATCAGCTACGGCGGCTTAGAAAAGGCTATGCTGAGAAGGTTAGGCCACTCTATTCCTCGAACTGTTTTTCGATAGGGCGCGTTTTCTGACAGAATATTATTCCATTTCAAATCCAATATTTATTTCCAGGTATTCTACGACCTAGTCCGCCAGATAAATCGCCGCTATCCGGAATCCGGTCGCCGTCAGGGACAATCGAATAAGCAGTGTTGCTCGTGTGTTATCATGTGATTCTCTCCTTCTCTTCTCCATCAATTAATTCAATATTTATATACATACGCATATTTATATATTCATTTATCTGCACAACATGTTAAAAATAATTTATATACTATTCACCTTCTTTTTGAAATTCACACAAGGTATTCCCCCTTCTTTTCCGTTGAATTTGCTTTCCTTCCCCAAAATCATCAAAATCATAATAATCAACCCATTTTCTTCTTCTGGTCCCTAGAAATTCTGGAAATCCTTTTTTTTAAATCTAAAACTTCCAATTTGAAAAGTATTATTTTCTCTCCGTCTCCTCTCTCTCTCTCTCTCTCTCTCTCCTCGTCTCTCACAGCTTCTAAATGACACTACATTTTACTGAACATTTCCCCTTTAAGGCTTTCATTTCGGCCGACCAAGTTTTTGAATTTGCGTTTCAAATGCGTTGCGTACGCAAACTCTAAATTCATCGACTTAACCGACCACCGACGGAATTTCTGAATTTGCGCGTCAACATGCTAAGAGTGTTTGCGTACGCAAACACCTTGACGCGCAAATGCACAAATTCGATGAGCGGTATGCCGATGAAATGAAAGCCTAATTTCCCCTTTAACCAGTGTGCCTTCCTC</canonical>
            <polymorphic>GTTAAATCGATCTAGAAATTACGCCAAATGAATATCGGGTCATTTCTAGGTCATACAAGTTCCTAGAAAAGTGAAAGTGTCCTAGAAAAGTGAAATTGCAAAGTTAGGCCACCATGTTAAATAACCTAAAACAGATGAGCTGCATGTTAGAACAATTCTGGACCATCAGCTACGGCGGCTTAGAAAAGGCTATGCTGAGAAGGTTAGGCCACTCTATTCCTCGAACTGTTTTTCGATAGGGCGCGTTTTCTGACAGAATATTATTCCATTTCAAATCCAATATTTATTTCCAGGTATTCTACGACCTAGTCCGCCAGATAAATCGCCGCTATCCGGAATCCGGTCGCCGTCAGGGACAATCGAATAAGCAGTGTTGCTCGTGTGTTATCATGTGATTCTCTCCTTCTCTTCTCCATCAATTAATTCAATATTTATATACATACGCATATTTATATATTCATTTATCTGCACAACATGTTAAAAATAATTTATATACTATYCACCTTCTTTTTGAAATTCACACAAGGTATTCCCCCTTCTTTTCCGTTGAATTTGCTTTCCTTCCCCAAAATCATCAAAATCATAATAATCAACCCATTTTCTTCTTCTGGTCCCTAGAAATTCTGGAAATCCTTTTTTTTAAATCTAAAACTTCCAATTTGAAAAGTATTATTTTCTCTCCGTCTCCTCTCTCTCTCTCTCTCTCTCTCTCCTCGTCTCTCACAGCTTCTAAATGACACTACATTTTACTGAACATTTCCCCTTTAAGGCTTTCATTTCGGCCGACCAAGTTTTTGAATTTGCGTTTCAAATGCGTTGCGTACGCAAACTCTAAATTCATCGACTTAACCGACCACCGACGGAATTTCTGAATTTGCGCGTCAACATGCTAAGAGTGTTTGCGTACGCAAACACCTTGACGCGCAAATGCACAAATTCGATGAGCGGTATGCCGATGAAATGAAAGCCTAATTTCCCCTTTAACCAGTGTGCCTTCCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAATCGAATAAGCAGTGTTG</pcr_primer_p1>
		<pcr_primer_p2>AAGAAGAAAATGGGTTGATTATT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACAATCGAATAAGCAGTGTTGCTCGTGTGTTATCATGTGATTCTCTCCTTCTCTTCTCCATCAATTAATTCAATATTTATATACATACGCATATTTATATATTCATTTATCTGCACAACATGTTAAAAATAATTTATATACTATTCACCTTCTTTTTGAAATTCACACAAGGTATTCCCCCTTCTTTTCCGTTGAATTTGCTTTCCTTCCCCAAAATCATCAAAATCATAATAATCAACCCATTTTCTTCTT</canonical_amplicon>
		<polymorphic_amplicon>ACAATCGAATAAGCAGTGTTGCTCGTGTGTTATCATGTGATTCTCTCCTTCTCTTCTCCATCAATTAATTCAATATTTATATACATACGCATATTTATATATTCATTTATCTGCACAACATGTTAAAAATAATTTATATACTATYCACCTTCTTTTTGAAATTCACACAAGGTATTCCCCCTTCTTTTCCGTTGAATTTGCTTTCCTTCCCCAAAATCATCAAAATCATAATAATCAACCCATTTTCTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3605</snp_id>
        <super_contig>c001701441.Contig1</super_contig>
        <contig_pos>12802</contig_pos>
        <strand>+</strand>
        <context>GAGAAATACT[A/G]AATGTTTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTCTGTGAGTCATTCCCTAGTTAATGATTCAAAACAACGAGAAATACT</left_flank>
        <right_flank>AATGTTTTTTTGTAATAATTTTTTATTCATTCTTTTTTGATTTACTGGAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTTTTCATGATCCATACACCTCTTTTCAAATTTTCCGATTTTTTTATCCTTGGCGGGATTATTCCAGTANNNNNNNNNNAAAGGTGTTTAGAGTATGGAAAACTGCTGAAAACAGCTTTTGAGCTCAAAAACAGGTCATATAAAAAACCAACAAAAAATAAAAAAAAGAGTTTCGACTATGAAGGAGTCGAACCATAGAGTACCATTTCCCCATCCCGCCGCTTTACCACTGAACCATCCCACTGCTGTTTTCAATGGTTCTTCAAAGCGTATAAAAGAAATGAGGACGTGGAAGCGTTCACGTATGCATTTCAGTGCAAAATCTACTGAAAACTTCTGACCTAAATTTCTCGAGTTAGCGGAGGCCGCCGCAAAAACTGAGCATATATTTGAAAATGAAATTTCATCCTCTTTCGAATGATATAGGTCTCGTCCCATAACTCCACATCTTCTGTGAGTCATTCCCTAGTTAATGATTCAAAACAACGAGAAATACTGAATGTTTTTTTGTAATAATTTTTTATTCATTCTTTTTTGATTTACTGGAAATCGTTTGAATAGTTTGGGTGTTTAATTTTTGTAAGGCGCATGAAAAATGTAAAAATACGGAGAAATCTTAAGATGACTTCTGAAAGTCCAGGAAACACCAGATGATAAATCTACTGTTATCTTGATTGACAGGAAACACAATCACAAGATTGATTAAGAAAAAAGATCATAGAATGAACAAGAATGTAGTTTGCTTCAAATCTAATTCTTCTGGTATTATGAAGCCACAAAAAATAACAAAATTGATCACATTGATATACCGTAATCATAGTCATGACATAGTCAATTTTCAAAAAAGATTAACAAACAAAAACGTAGTGACGGGGTGTTCAAGCACGTTTTTCCACCTCGCTTGGACCCACTGATCTTCGAGAAACAGGAAAAGAGAGAGGACGAGAAATGATATAGTGATATAGGTGAGTTGATAAGGAAAGTGACCAAAGCAGTGA</canonical>
            <polymorphic>ATGTTTTCATGATCCATACACCTCTTTTCAAATTTTCCGATTTTTTTATCCTTGGCGGGATTATTCCAGTANNNNNNNNNNAAAGGTGTTTAGAGTATGGAAAACTGCTGAAAACAGCTTTTGAGCTCAAAAACAGGTCATATAAAAAACCAACAAAAAATAAAAAAAAGAGTTTCGACTATGAAGGAGTCGAACCATAGAGTACCATTTCCCCATCCCGCCGCTTTACCACTGAACCATCCCACTGCTGTTTTCAATGGTTCTTCAAAGCGTATAAAAGAAATGAGGACGTGGAAGCGTTCACGTATGCATTTCAGTGCAAAATCTACTGAAAACTTCTGACCTAAATTTCTCGAGTTAGCGGAGGCCGCCGCAAAAACTGAGCATATATTTGAAAATGAAATTTCATCCTCTTTCGAATGATATAGGTCTCGTCCCATAACTCCACATCTTCTGTGAGTCATTCCCTAGTTAATGATTCAAAACAACGAGAAATACTRAATGTTTTTTTGTAATAATTTTTTATTCATTCTTTTTTGATTTACTGGAAATCGTTTGAATAGTTTGGGTGTTTAATTTTTGTAAGGCGCATGAAAAATGTAAAAATACGGAGAAATCTTAAGATGACTTCTGAAAGTCCAGGAAACACCAGATGATAAATCTACTGTTATCTTGATTGACAGGAAACACAATCACAAGATTGATTAAGAAAAAAGATCATAGAATGAACAAGAATGTAGTTTGCTTCAAATCTAATTCTTCTGGTATTATGAAGCCACAAAAAATAACAAAATTGATCACATTGATATACCGTAATCATAGTCATGACATAGTCAATTTTCAAAAAAGATTAACAAACAAAAACGTAGTGACGGGGTGTTCAAGCACGTTTTTCCACCTCGCTTGGACCCACTGATCTTCGAGAAACAGGAAAAGAGAGAGGACGAGAAATGATATAGTGATATAGGTGAGTTGATAAGGAAAGTGACCAAAGCAGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCGTATAAAAGAAATGAGGAC</pcr_primer_p1>
		<pcr_primer_p2>ACTATTCAAACGATTTCCAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>297</pcr_amplicon_size>
		<canonical_amplicon>AAGCGTATAAAAGAAATGAGGACGTGGAAGCGTTCACGTATGCATTTCAGTGCAAAATCTACTGAAAACTTCTGACCTAAATTTCTCGAGTTAGCGGAGGCCGCCGCAAAAACTGAGCATATATTTGAAAATGAAATTTCATCCTCTTTCGAATGATATAGGTCTCGTCCCATAACTCCACATCTTCTGTGAGTCATTCCCTAGTTAATGATTCAAAACAACGAGAAATACTGAATGTTTTTTTGTAATAATTTTTTATTCATTCTTTTTTGATTTACTGGAAATCGTTTGAATAGT</canonical_amplicon>
		<polymorphic_amplicon>AAGCGTATAAAAGAAATGAGGACGTGGAAGCGTTCACGTATGCATTTCAGTGCAAAATCTACTGAAAACTTCTGACCTAAATTTCTCGAGTTAGCGGAGGCCGCCGCAAAAACTGAGCATATATTTGAAAATGAAATTTCATCCTCTTTCGAATGATATAGGTCTCGTCCCATAACTCCACATCTTCTGTGAGTCATTCCCTAGTTAATGATTCAAAACAACGAGAAATACTRAATGTTTTTTTGTAATAATTTTTTATTCATTCTTTTTTGATTTACTGGAAATCGTTTGAATAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3606</snp_id>
        <super_contig>c001701441.Contig1</super_contig>
        <contig_pos>13129</contig_pos>
        <strand>+</strand>
        <context>TCATAGTCAT[G/T]ACATAGTCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CACAAAAAATAACAAAATTGATCACATTGATATACCGTAATCATAGTCAT</left_flank>
        <right_flank>ACATAGTCAATTTTCAAAAAAGATTAACAAACAAAAACGTAGTGACGGGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTGAAAACTTCTGACCTAAATTTCTCGAGTTAGCGGAGGCCGCCGCAAAAACTGAGCATATATTTGAAAATGAAATTTCATCCTCTTTCGAATGATATAGGTCTCGTCCCATAACTCCACATCTTCTGTGAGTCATTCCCTAGTTAATGATTCAAAACAACGAGAAATACTGAATGTTTTTTTGTAATAATTTTTTATTCATTCTTTTTTGATTTACTGGAAATCGTTTGAATAGTTTGGGTGTTTAATTTTTGTAAGGCGCATGAAAAATGTAAAAATACGGAGAAATCTTAAGATGACTTCTGAAAGTCCAGGAAACACCAGATGATAAATCTACTGTTATCTTGATTGACAGGAAACACAATCACAAGATTGATTAAGAAAAAAGATCATAGAATGAACAAGAATGTAGTTTGCTTCAAATCTAATTCTTCTGGTATTATGAAGCCACAAAAAATAACAAAATTGATCACATTGATATACCGTAATCATAGTCATGACATAGTCAATTTTCAAAAAAGATTAACAAACAAAAACGTAGTGACGGGGTGTTCAAGCACGTTTTTCCACCTCGCTTGGACCCACTGATCTTCGAGAAACAGGAAAAGAGAGAGGACGAGAAATGATATAGTGATATAGGTGAGTTGATAAGGAAAGTGACCAAAGCAGTGAATCTTTTTCAAAGAAGCCTATTTGATAATCAGATCAGATTGGAACTAATGCTTCTTCTTCACACCCATCAACTTTCTCCGTTCATTTTTTTACTTTTTGCATTAGTCATTCCGTTGGTTAAAGCGAAAGGTAAGTGATTTGATGATGGGAATTAATAGATGAAAGTTGATATTTGTGGAAATGATACTGTCCTTCTAAACTCCCTCCAAAGACTACAGTAACCTAAACCTAAGTTCTTAGAGAGAAAAAATTTATTGTTTTCAAACAAGGTCCTCCACACTGTCAATCCTGAGCTCATATATTTCAATCCCTATGCAAGATATATAA</canonical>
            <polymorphic>ACTGAAAACTTCTGACCTAAATTTCTCGAGTTAGCGGAGGCCGCCGCAAAAACTGAGCATATATTTGAAAATGAAATTTCATCCTCTTTCGAATGATATAGGTCTCGTCCCATAACTCCACATCTTCTGTGAGTCATTCCCTAGTTAATGATTCAAAACAACGAGAAATACTGAATGTTTTTTTGTAATAATTTTTTATTCATTCTTTTTTGATTTACTGGAAATCGTTTGAATAGTTTGGGTGTTTAATTTTTGTAAGGCGCATGAAAAATGTAAAAATACGGAGAAATCTTAAGATGACTTCTGAAAGTCCAGGAAACACCAGATGATAAATCTACTGTTATCTTGATTGACAGGAAACACAATCACAAGATTGATTAAGAAAAAAGATCATAGAATGAACAAGAATGTAGTTTGCTTCAAATCTAATTCTTCTGGTATTATGAAGCCACAAAAAATAACAAAATTGATCACATTGATATACCGTAATCATAGTCATKACATAGTCAATTTTCAAAAAAGATTAACAAACAAAAACGTAGTGACGGGGTGTTCAAGCACGTTTTTCCACCTCGCTTGGACCCACTGATCTTCGAGAAACAGGAAAAGAGAGAGGACGAGAAATGATATAGTGATATAGGTGAGTTGATAAGGAAAGTGACCAAAGCAGTGAATCTTTTTCAAAGAAGCCTATTTGATAATCAGATCAGATTGGAACTAATGCTTCTTCTTCACACCCATCAACTTTCTCCGTTCATTTTTTTACTTTTTGCATTAGTCATTCCGTTGGTTAAAGCGAAAGGTAAGTGATTTGATGATGGGAATTAATAGATGAAAGTTGATATTTGTGGAAATGATACTGTCCTTCTAAACTCCCTCCAAAGACTACAGTAACCTAAACCTAAGTTCTTAGAGAGAAAAAATTTATTGTTTTCAAACAAGGTCCTCCACACTGTCAATCCTGAGCTCATATATTTCAATCCCTATGCAAGATATATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNGTC</site>
                <isoschizomers>
                    <enzyme>AspI</enzyme>
                    <enzyme>PflFI</enzyme>
                    <enzyme>PsyI</enzyme>
                    <enzyme>TelI</enzyme>
                    <enzyme>Tth111I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 263 234</canonical_bands>
                <polymorphic_bands>737 263</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>367 320 152 97 39 25</canonical_bands>
                <polymorphic_bands>367 320 249 39 25</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGCTTCAAATCTAATTCTTCTG</pcr_primer_p1>
		<pcr_primer_p2>CACTTTCCTTATCAACTCACCTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTGCTTCAAATCTAATTCTTCTGGTATTATGAAGCCACAAAAAATAACAAAATTGATCACATTGATATACCGTAATCATAGTCATGACATAGTCAATTTTCAAAAAAGATTAACAAACAAAAACGTAGTGACGGGGTGTTCAAGCACGTTTTTCCACCTCGCTTGGACCCACTGATCTTCGAGAAACAGGAAAAGAGAGAGGACGAGAAATGATATAGTGATATAGGTGAGTTGATAAGGAAAGTG</canonical_amplicon>
		<polymorphic_amplicon>TTGCTTCAAATCTAATTCTTCTGGTATTATGAAGCCACAAAAAATAACAAAATTGATCACATTGATATACCGTAATCATAGTCATKACATAGTCAATTTTCAAAAAAGATTAACAAACAAAAACGTAGTGACGGGGTGTTCAAGCACGTTTTTCCACCTCGCTTGGACCCACTGATCTTCGAGAAACAGGAAAAGAGAGAGGACGAGAAATGATATAGTGATATAGGTGAGTTGATAAGGAAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3607</snp_id>
        <super_contig>c001701441.Contig1</super_contig>
        <contig_pos>16902</contig_pos>
        <strand>+</strand>
        <context>AGGTAATATT[C/T]CTCATTTGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTGAATGTTAAAAAATCGGATTTGCTGACAAGTGACCAAGGTAATATT</left_flank>
        <right_flank>CTCATTTGTGAAAAACCACTAACAATTTTATATTTTAGGTGAGTCAGCTG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGACTGTTTCTACGTAATTTGCCATACGCTACAAAAGAAGACGACCTTCAGTTTCTTTTCAAAAAGTATGGAGAGGTTTCGGAAGTTCAGGTCATTATCGATAAGAAGACTGGTAGCTGTAAAGGTTTTGCAATCGTTGAATTCGTTTTCCCCGAGGCGGCAGTCGCTGCTTATTCGGCTCTTGACGGATACGTTTTCAAAGGACGTATGATGCATATTCTTCCTGGAGACGAAAAGCGTGATACGCCTGCTGAAGATCAAGAAACTGTGGAAACTGCTCCAGACGATCCAGACAATCCAACGAAAGCCGCTGTCAAGAAAGAGAAGAAAAAGAAGACGTTCAAGGATGAAAAGGAAGAAGAGAAGAAGGCTTCTGCTGGCAAAACAGCTCACTCATGGAATGCTTTGTTTTTGGGCGCTAACGCGATTGCAGATACATTGGCACAACGTTTGAATGTTAAAAAATCGGATTTGCTGACAAGTGACCAAGGTAATATTTCTCATTTGTGAAAAACCACTAACAATTTTATATTTTAGGTGAGTCAGCTGGAGTTCGTCTAGCTCTTGCCGAAACACGTCTTGTTCGCGAAACTCGTGATTTCTTCCTGGAAAACGGTGTGAAGTTAGACGCATTCTCAAAGCCTGCTGAAAAACGAAGTGATACTGTCATGTTGGCGAAGAACTTGCCAGCTGGTGTAGAAACTGAAGAGCTTCAAAGAATGTTTGAAAAATTCGGTGATTGTCAGAAAGTATTGATGCCTTCTGAAGGCGGTGTCAGTGCTCTCGTCATTATGGGAAACCCTGTTGATGCTAAAAAGGCTTTCCGAGCGTTAGCCTATTCCCGATTCAGAAGTCAGCCATTGTATCTTGAATGGGCTCCATATGACGTGATGGGAGCCACTGAACAACCAAAAGAAGAAGAACAGGAAAAATCAGAAGATTATACAAAACCAAAAAAGTCTAAGAGAGAAATGACTTATGAGGAGAAGAAAAAGGAGA</canonical>
            <polymorphic>CCGACTGTTTCTACGTAATTTGCCATACGCTACAAAAGAAGACGACCTTCAGTTTCTTTTCAAAAAGTATGGAGAGGTTTCGGAAGTTCAGGTCATTATCGATAAGAAGACTGGTAGCTGTAAAGGTTTTGCAATCGTTGAATTCGTTTTCCCCGAGGCGGCAGTCGCTGCTTATTCGGCTCTTGACGGATACGTTTTCAAAGGACGTATGATGCATATTCTTCCTGGAGACGAAAAGCGTGATACGCCTGCTGAAGATCAAGAAACTGTGGAAACTGCTCCAGACGATCCAGACAATCCAACGAAAGCCGCTGTCAAGAAAGAGAAGAAAAAGAAGACGTTCAAGGATGAAAAGGAAGAAGAGAAGAAGGCTTCTGCTGGCAAAACAGCTCACTCATGGAATGCTTTGTTTTTGGGCGCTAACGCGATTGCAGATACATTGGCACAACGTTTGAATGTTAAAAAATCGGATTTGCTGACAAGTGACCAAGGTAATATTYCTCATTTGTGAAAAACCACTAACAATTTTATATTTTAGGTGAGTCAGCTGGAGTTCGTCTAGCTCTTGCCGAAACACGTCTTGTTCGCGAAACTCGTGATTTCTTCCTGGAAAACGGTGTGAAGTTAGACGCATTCTCAAAGCCTGCTGAAAAACGAAGTGATACTGTCATGTTGGCGAAGAACTTGCCAGCTGGTGTAGAAACTGAAGAGCTTCAAAGAATGTTTGAAAAATTCGGTGATTGTCAGAAAGTATTGATGCCTTCTGAAGGCGGTGTCAGTGCTCTCGTCATTATGGGAAACCCTGTTGATGCTAAAAAGGCTTTCCGAGCGTTAGCCTATTCCCGATTCAGAAGTCAGCCATTGTATCTTGAATGGGCTCCATATGACGTGATGGGAGCCACTGAACAACCAAAAGAAGAAGAACAGGAAAAATCAGAAGATTATACAAAACCAAAAAAGTCTAAGAGAGAAATGACTTATGAGGAGAAGAAAAAGGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCATGGAATGCTTTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTTGAGAATGCGTCTAACTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCATGGAATGCTTTGTTTTTGGGCGCTAACGCGATTGCAGATACATTGGCACAACGTTTGAATGTTAAAAAATCGGATTTGCTGACAAGTGACCAAGGTAATATTTCTCATTTGTGAAAAACCACTAACAATTTTATATTTTAGGTGAGTCAGCTGGAGTTCGTCTAGCTCTTGCCGAAACACGTCTTGTTCGCGAAACTCGTGATTTCTTCCTGGAAAACGGTGTGAAGTTAGACGCATTCTCAAAG</canonical_amplicon>
		<polymorphic_amplicon>CTCATGGAATGCTTTGTTTTTGGGCGCTAACGCGATTGCAGATACATTGGCACAACGTTTGAATGTTAAAAAATCGGATTTGCTGACAAGTGACCAAGGTAATATTYCTCATTTGTGAAAAACCACTAACAATTTTATATTTTAGGTGAGTCAGCTGGAGTTCGTCTAGCTCTTGCCGAAACACGTCTTGTTCGCGAAACTCGTGATTTCTTCCTGGAAAACGGTGTGAAGTTAGACGCATTCTCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3608</snp_id>
        <super_contig>c001701441.Contig1</super_contig>
        <contig_pos>16475</contig_pos>
        <strand>+</strand>
        <context>AAAAGTATGG[A/G]GAGGTTTCGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCATACGCTACAAAAGAAGACGACCTTCAGTTTCTTTTCAAAAAGTATGG</left_flank>
        <right_flank>GAGGTTTCGGAAGTTCAGGTCATTATCGATAAGAAGACTGGTAGCTGTAA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACCACCTTTTTTTCAGATTCTATATTCATATTCTGAAGTTCGATGTTTCAGGTGATACTTCACTCTCTTTAATTTTCTCCGGACTGCCGAGCTCCGCAAAAGGTAAAAATATCAAGGAATGGCTCAATCCAATTCGTGTGAAAGCTATGAAAATCGCCCGGAATGACGATGTTGCTGCAGCATTTGTTTCTTTCAACAGACCACCAGATGTCCGAAGAGCTCTTCAAAAGGACGGACAGTTTTTAGGAGGATTTAAAATTGCAATCGAAAAAGTAAGCTGCTCTAAATTTTCCGTTTGTTGATGTGAGATAATTTCAGATCGAGACAGCCGAACCAGAAAAAGAACATGTCGAAGAGCACGGAGCTTCGTTGGAGAGCCGAGACAAAGAGGAAGAGTCGGTTCGTGAAAAGATCCTCGAGACAGGCCGACTGTTTCTACGTAATTTGCCATACGCTACAAAAGAAGACGACCTTCAGTTTCTTTTCAAAAAGTATGGAGAGGTTTCGGAAGTTCAGGTCATTATCGATAAGAAGACTGGTAGCTGTAAAGGTTTTGCAATCGTTGAATTCGTTTTCCCCGAGGCGGCAGTCGCTGCTTATTCGGCTCTTGACGGATACGTTTTCAAAGGACGTATGATGCATATTCTTCCTGGAGACGAAAAGCGTGATACGCCTGCTGAAGATCAAGAAACTGTGGAAACTGCTCCAGACGATCCAGACAATCCAACGAAAGCCGCTGTCAAGAAAGAGAAGAAAAAGAAGACGTTCAAGGATGAAAAGGAAGAAGAGAAGAAGGCTTCTGCTGGCAAAACAGCTCACTCATGGAATGCTTTGTTTTTGGGCGCTAACGCGATTGCAGATACATTGGCACAACGTTTGAATGTTAAAAAATCGGATTTGCTGACAAGTGACCAAGGTAATATTTCTCATTTGTGAAAAACCACTAACAATTTTATATTTTAGGTGAGTCAGCTGGAGTTCGTCTAGCTCTTGCCGAA</canonical>
            <polymorphic>GTACCACCTTTTTTTCAGATTCTATATTCATATTCTGAAGTTCGATGTTTCAGGTGATACTTCACTCTCTTTAATTTTCTCCGGACTGCCGAGCTCCGCAAAAGGTAAAAATATCAAGGAATGGCTCAATCCAATTCGTGTGAAAGCTATGAAAATCGCCCGGAATGACGATGTTGCTGCAGCATTTGTTTCTTTCAACAGACCACCAGATGTCCGAAGAGCTCTTCAAAAGGACGGACAGTTTTTAGGAGGATTTAAAATTGCAATCGAAAAAGTAAGCTGCTCTAAATTTTCCGTTTGTTGATGTGAGATAATTTCAGATCGAGACAGCCGAACCAGAAAAAGAACATGTCGAAGAGCACGGAGCTTCGTTGGAGAGCCGAGACAAAGAGGAAGAGTCGGTTCGTGAAAAGATCCTCGAGACAGGCCGACTGTTTCTACGTAATTTGCCATACGCTACAAAAGAAGACGACCTTCAGTTTCTTTTCAAAAAGTATGGRGAGGTTTCGGAAGTTCAGGTCATTATCGATAAGAAGACTGGTAGCTGTAAAGGTTTTGCAATCGTTGAATTCGTTTTCCCCGAGGCGGCAGTCGCTGCTTATTCGGCTCTTGACGGATACGTTTTCAAAGGACGTATGATGCATATTCTTCCTGGAGACGAAAAGCGTGATACGCCTGCTGAAGATCAAGAAACTGTGGAAACTGCTCCAGACGATCCAGACAATCCAACGAAAGCCGCTGTCAAGAAAGAGAAGAAAAAGAAGACGTTCAAGGATGAAAAGGAAGAAGAGAAGAAGGCTTCTGCTGGCAAAACAGCTCACTCATGGAATGCTTTGTTTTTGGGCGCTAACGCGATTGCAGATACATTGGCACAACGTTTGAATGTTAAAAAATCGGATTTGCTGACAAGTGACCAAGGTAATATTTCTCATTTGTGAAAAACCACTAACAATTTTATATTTTAGGTGAGTCAGCTGGAGTTCGTCTAGCTCTTGCCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGATAATTTCAGATCGAGACAG</pcr_primer_p1>
		<pcr_primer_p2>AAACCTTTACAGCTACCAGTCTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAGATAATTTCAGATCGAGACAGCCGAACCAGAAAAAGAACATGTCGAAGAGCACGGAGCTTCGTTGGAGAGCCGAGACAAAGAGGAAGAGTCGGTTCGTGAAAAGATCCTCGAGACAGGCCGACTGTTTCTACGTAATTTGCCATACGCTACAAAAGAAGACGACCTTCAGTTTCTTTTCAAAAAGTATGGAGAGGTTTCGGAAGTTCAGGTCATTATCGATAAGAAGACTGGTAGCTGTAAAGGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAGATAATTTCAGATCGAGACAGCCGAACCAGAAAAAGAACATGTCGAAGAGCACGGAGCTTCGTTGGAGAGCCGAGACAAAGAGGAAGAGTCGGTTCGTGAAAAGATCCTCGAGACAGGCCGACTGTTTCTACGTAATTTGCCATACGCTACAAAAGAAGACGACCTTCAGTTTCTTTTCAAAAAGTATGGRGAGGTTTCGGAAGTTCAGGTCATTATCGATAAGAAGACTGGTAGCTGTAAAGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3609</snp_id>
        <super_contig>c001701441.Contig1</super_contig>
        <contig_pos>24864</contig_pos>
        <strand>+</strand>
        <context>GACAGAATTT[C/T]CTTCGTTAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGTCATGGCTCGTTACTCATCTTACGTCACCTTTTCTCAGACAGAATTT</left_flank>
        <right_flank>CTTCGTTAACCTTCTACAACATTTTTCAAAAGGGAAATCAAGTGATGTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCAACGATTCTGAATTTGAAAAACATATTCAATATTATTCGGGTTCAAAAAAAACGTCGGAGTTGTGGAAGAGAAACGCCGGTGGCCGTGGCCGAAGGTCCCACAGCGACAACTACCGTAACCTTAAAATATTCTTATTTTNNNNNNNNNNCAGTTATGTCGCGAAATGCTTTGAAATACATTTCGCGACGCTCATGCATTGAATTTCGAGGGCGCGGAAATGCATTTAAATACATATTTTCGCTACATGAATAACCCCATAAAAGTTACGGTAGTTGTCGTTATGAGCCCTTCGGCCACGGCCACCGGAATTTCTTTTCCACGACTCCAACTGTTTGTACCAGCTTAAAAACTAACATTGTTGATTAACAAAAAGAAACAACTTTCAATTCTTTTCTGTTTTCACAAGTTGACCTAATTCAACGCAATCAAAATAGTGAAATTCGGTCGTCATGGCTCGTTACTCATCTTACGTCACCTTTTCTCAGACAGAATTTCCTTCGTTAACCTTCTACAACATTTTTCAAAAGGGAAATCAAGTGATGTCTGAATAATTGTAATGCTCTTCCACGAGAAGTCCCATCATGGAATTGAAAACCGAATTATCAGTACTTTTTTATTTTTCAATTGTTCAGGATCCACCACATCGACTGGTTTTGTAAGGATTTCAACACCATTGGTTGTAGTCAAGATTTGGAACCGTGACATCTACGTCAGACTACCCGGGCTGGGTCCTGTGTCAAGTTATTATAAAGTAGTCCTGAAAGAATTATGATGATCTTATCTTAAAGTTCTTTGAGGAGTAGCTGGAAGTGCTTCAGATTCTCTTTTTGCTTAATCTTTTTTTTTCATTATCTTTATTTTCAACATGTTTCCATGTTAAAAAAAACAAATTTTTTGGAATTCCAAATTTGTAGTTTTCAGAATTAGGAACTTTGAAAGTACTAACACAATGTCCAGATGGTGCATAACCTCCGCTGGCCAACCGTAATCCTTAT</canonical>
            <polymorphic>CTCCAACGATTCTGAATTTGAAAAACATATTCAATATTATTCGGGTTCAAAAAAAACGTCGGAGTTGTGGAAGAGAAACGCCGGTGGCCGTGGCCGAAGGTCCCACAGCGACAACTACCGTAACCTTAAAATATTCTTATTTTNNNNNNNNNNCAGTTATGTCGCGAAATGCTTTGAAATACATTTCGCGACGCTCATGCATTGAATTTCGAGGGCGCGGAAATGCATTTAAATACATATTTTCGCTACATGAATAACCCCATAAAAGTTACGGTAGTTGTCGTTATGAGCCCTTCGGCCACGGCCACCGGAATTTCTTTTCCACGACTCCAACTGTTTGTACCAGCTTAAAAACTAACATTGTTGATTAACAAAAAGAAACAACTTTCAATTCTTTTCTGTTTTCACAAGTTGACCTAATTCAACGCAATCAAAATAGTGAAATTCGGTCGTCATGGCTCGTTACTCATCTTACGTCACCTTTTCTCAGACAGAATTTYCTTCGTTAACCTTCTACAACATTTTTCAAAAGGGAAATCAAGTGATGTCTGAATAATTGTAATGCTCTTCCACGAGAAGTCCCATCATGGAATTGAAAACCGAATTATCAGTACTTTTTTATTTTTCAATTGTTCAGGATCCACCACATCGACTGGTTTTGTAAGGATTTCAACACCATTGGTTGTAGTCAAGATTTGGAACCGTGACATCTACGTCAGACTACCCGGGCTGGGTCCTGTGTCAAGTTATTATAAAGTAGTCCTGAAAGAATTATGATGATCTTATCTTAAAGTTCTTTGAGGAGTAGCTGGAAGTGCTTCAGATTCTCTTTTTGCTTAATCTTTTTTTTTCATTATCTTTATTTTCAACATGTTTCCATGTTAAAAAAAACAAATTTTTTGGAATTCCAAATTTGTAGTTTTCAGAATTAGGAACTTTGAAAGTACTAACACAATGTCCAGATGGTGCATAACCTCCGCTGGCCAACCGTAATCCTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTTTTCACAAGTTGACCTAAT</pcr_primer_p1>
		<pcr_primer_p2>GATCCTGAACAATTGAAAAATAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTGTTTTCACAAGTTGACCTAATTCAACGCAATCAAAATAGTGAAATTCGGTCGTCATGGCTCGTTACTCATCTTACGTCACCTTTTCTCAGACAGAATTTCCTTCGTTAACCTTCTACAACATTTTTCAAAAGGGAAATCAAGTGATGTCTGAATAATTGTAATGCTCTTCCACGAGAAGTCCCATCATGGAATTGAAAACCGAATTATCAGTACTTTTTTATTTTTCAATTGTTCAGGATC</canonical_amplicon>
		<polymorphic_amplicon>CTGTTTTCACAAGTTGACCTAATTCAACGCAATCAAAATAGTGAAATTCGGTCGTCATGGCTCGTTACTCATCTTACGTCACCTTTTCTCAGACAGAATTTYCTTCGTTAACCTTCTACAACATTTTTCAAAAGGGAAATCAAGTGATGTCTGAATAATTGTAATGCTCTTCCACGAGAAGTCCCATCATGGAATTGAAAACCGAATTATCAGTACTTTTTTATTTTTCAATTGTTCAGGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3610</snp_id>
        <super_contig>c001701441.Contig1</super_contig>
        <contig_pos>24892</contig_pos>
        <strand>+</strand>
        <context>AACATTTTTC[A/G]AAAGGGAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACCTTTTCTCAGACAGAATTTCCTTCGTTAACCTTCTACAACATTTTTC</left_flank>
        <right_flank>AAAGGGAAATCAAGTGATGTCTGAATAATTGTAATGCTCTTCCACGAGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCAATATTATTCGGGTTCAAAAAAAACGTCGGAGTTGTGGAAGAGAAACGCCGGTGGCCGTGGCCGAAGGTCCCACAGCGACAACTACCGTAACCTTAAAATATTCTTATTTTNNNNNNNNNNCAGTTATGTCGCGAAATGCTTTGAAATACATTTCGCGACGCTCATGCATTGAATTTCGAGGGCGCGGAAATGCATTTAAATACATATTTTCGCTACATGAATAACCCCATAAAAGTTACGGTAGTTGTCGTTATGAGCCCTTCGGCCACGGCCACCGGAATTTCTTTTCCACGACTCCAACTGTTTGTACCAGCTTAAAAACTAACATTGTTGATTAACAAAAAGAAACAACTTTCAATTCTTTTCTGTTTTCACAAGTTGACCTAATTCAACGCAATCAAAATAGTGAAATTCGGTCGTCATGGCTCGTTACTCATCTTACGTCACCTTTTCTCAGACAGAATTTCCTTCGTTAACCTTCTACAACATTTTTCAAAAGGGAAATCAAGTGATGTCTGAATAATTGTAATGCTCTTCCACGAGAAGTCCCATCATGGAATTGAAAACCGAATTATCAGTACTTTTTTATTTTTCAATTGTTCAGGATCCACCACATCGACTGGTTTTGTAAGGATTTCAACACCATTGGTTGTAGTCAAGATTTGGAACCGTGACATCTACGTCAGACTACCCGGGCTGGGTCCTGTGTCAAGTTATTATAAAGTAGTCCTGAAAGAATTATGATGATCTTATCTTAAAGTTCTTTGAGGAGTAGCTGGAAGTGCTTCAGATTCTCTTTTTGCTTAATCTTTTTTTTTCATTATCTTTATTTTCAACATGTTTCCATGTTAAAAAAAACAAATTTTTTGGAATTCCAAATTTGTAGTTTTCAGAATTAGGAACTTTGAAAGTACTAACACAATGTCCAGATGGTGCATAACCTCCGCTGGCCAACCGTAATCCTTATTTGCTCATTATAAAGGCATTTTCTAATA</canonical>
            <polymorphic>ATTCAATATTATTCGGGTTCAAAAAAAACGTCGGAGTTGTGGAAGAGAAACGCCGGTGGCCGTGGCCGAAGGTCCCACAGCGACAACTACCGTAACCTTAAAATATTCTTATTTTNNNNNNNNNNCAGTTATGTCGCGAAATGCTTTGAAATACATTTCGCGACGCTCATGCATTGAATTTCGAGGGCGCGGAAATGCATTTAAATACATATTTTCGCTACATGAATAACCCCATAAAAGTTACGGTAGTTGTCGTTATGAGCCCTTCGGCCACGGCCACCGGAATTTCTTTTCCACGACTCCAACTGTTTGTACCAGCTTAAAAACTAACATTGTTGATTAACAAAAAGAAACAACTTTCAATTCTTTTCTGTTTTCACAAGTTGACCTAATTCAACGCAATCAAAATAGTGAAATTCGGTCGTCATGGCTCGTTACTCATCTTACGTCACCTTTTCTCAGACAGAATTTCCTTCGTTAACCTTCTACAACATTTTTCRAAAGGGAAATCAAGTGATGTCTGAATAATTGTAATGCTCTTCCACGAGAAGTCCCATCATGGAATTGAAAACCGAATTATCAGTACTTTTTTATTTTTCAATTGTTCAGGATCCACCACATCGACTGGTTTTGTAAGGATTTCAACACCATTGGTTGTAGTCAAGATTTGGAACCGTGACATCTACGTCAGACTACCCGGGCTGGGTCCTGTGTCAAGTTATTATAAAGTAGTCCTGAAAGAATTATGATGATCTTATCTTAAAGTTCTTTGAGGAGTAGCTGGAAGTGCTTCAGATTCTCTTTTTGCTTAATCTTTTTTTTTCATTATCTTTATTTTCAACATGTTTCCATGTTAAAAAAAACAAATTTTTTGGAATTCCAAATTTGTAGTTTTCAGAATTAGGAACTTTGAAAGTACTAACACAATGTCCAGATGGTGCATAACCTCCGCTGGCCAACCGTAATCCTTATTTGCTCATTATAAAGGCATTTTCTAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTTTTCACAAGTTGACCTAAT</pcr_primer_p1>
		<pcr_primer_p2>GATCCTGAACAATTGAAAAATAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTGTTTTCACAAGTTGACCTAATTCAACGCAATCAAAATAGTGAAATTCGGTCGTCATGGCTCGTTACTCATCTTACGTCACCTTTTCTCAGACAGAATTTCCTTCGTTAACCTTCTACAACATTTTTCAAAAGGGAAATCAAGTGATGTCTGAATAATTGTAATGCTCTTCCACGAGAAGTCCCATCATGGAATTGAAAACCGAATTATCAGTACTTTTTTATTTTTCAATTGTTCAGGATC</canonical_amplicon>
		<polymorphic_amplicon>CTGTTTTCACAAGTTGACCTAATTCAACGCAATCAAAATAGTGAAATTCGGTCGTCATGGCTCGTTACTCATCTTACGTCACCTTTTCTCAGACAGAATTTCCTTCGTTAACCTTCTACAACATTTTTCRAAAGGGAAATCAAGTGATGTCTGAATAATTGTAATGCTCTTCCACGAGAAGTCCCATCATGGAATTGAAAACCGAATTATCAGTACTTTTTTATTTTTCAATTGTTCAGGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3611</snp_id>
        <super_contig>c001701441.Contig1</super_contig>
        <contig_pos>25065</contig_pos>
        <strand>+</strand>
        <context>AAGATTTGGA[A/G]CCGTGACATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACTGGTTTTGTAAGGATTTCAACACCATTGGTTGTAGTCAAGATTTGGA</left_flank>
        <right_flank>CCGTGACATCTACGTCAGACTACCCGGGCTGGGTCCTGTGTCAAGTTATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAATTTCGAGGGCGCGGAAATGCATTTAAATACATATTTTCGCTACATGAATAACCCCATAAAAGTTACGGTAGTTGTCGTTATGAGCCCTTCGGCCACGGCCACCGGAATTTCTTTTCCACGACTCCAACTGTTTGTACCAGCTTAAAAACTAACATTGTTGATTAACAAAAAGAAACAACTTTCAATTCTTTTCTGTTTTCACAAGTTGACCTAATTCAACGCAATCAAAATAGTGAAATTCGGTCGTCATGGCTCGTTACTCATCTTACGTCACCTTTTCTCAGACAGAATTTCCTTCGTTAACCTTCTACAACATTTTTCAAAAGGGAAATCAAGTGATGTCTGAATAATTGTAATGCTCTTCCACGAGAAGTCCCATCATGGAATTGAAAACCGAATTATCAGTACTTTTTTATTTTTCAATTGTTCAGGATCCACCACATCGACTGGTTTTGTAAGGATTTCAACACCATTGGTTGTAGTCAAGATTTGGAACCGTGACATCTACGTCAGACTACCCGGGCTGGGTCCTGTGTCAAGTTATTATAAAGTAGTCCTGAAAGAATTATGATGATCTTATCTTAAAGTTCTTTGAGGAGTAGCTGGAAGTGCTTCAGATTCTCTTTTTGCTTAATCTTTTTTTTTCATTATCTTTATTTTCAACATGTTTCCATGTTAAAAAAAACAAATTTTTTGGAATTCCAAATTTGTAGTTTTCAGAATTAGGAACTTTGAAAGTACTAACACAATGTCCAGATGGTGCATAACCTCCGCTGGCCAACCGTAATCCTTATTTGCTCATTATAAAGGCATTTTCTAATAAATGCACATCGCATCAGTGGCAACATCGAAGAAAGGAGACGACGAGCGGTAGTAATCTGTCCGTGTAATACAAAAAATACACATACAACAATTCGATACAAACATAGATGTAGATACTCTTCATCAAATGAAAGAAAAAGAAAAAGGAGAAACCTAGTTTCTTCCTTTTACTC</canonical>
            <polymorphic>TTGAATTTCGAGGGCGCGGAAATGCATTTAAATACATATTTTCGCTACATGAATAACCCCATAAAAGTTACGGTAGTTGTCGTTATGAGCCCTTCGGCCACGGCCACCGGAATTTCTTTTCCACGACTCCAACTGTTTGTACCAGCTTAAAAACTAACATTGTTGATTAACAAAAAGAAACAACTTTCAATTCTTTTCTGTTTTCACAAGTTGACCTAATTCAACGCAATCAAAATAGTGAAATTCGGTCGTCATGGCTCGTTACTCATCTTACGTCACCTTTTCTCAGACAGAATTTCCTTCGTTAACCTTCTACAACATTTTTCAAAAGGGAAATCAAGTGATGTCTGAATAATTGTAATGCTCTTCCACGAGAAGTCCCATCATGGAATTGAAAACCGAATTATCAGTACTTTTTTATTTTTCAATTGTTCAGGATCCACCACATCGACTGGTTTTGTAAGGATTTCAACACCATTGGTTGTAGTCAAGATTTGGARCCGTGACATCTACGTCAGACTACCCGGGCTGGGTCCTGTGTCAAGTTATTATAAAGTAGTCCTGAAAGAATTATGATGATCTTATCTTAAAGTTCTTTGAGGAGTAGCTGGAAGTGCTTCAGATTCTCTTTTTGCTTAATCTTTTTTTTTCATTATCTTTATTTTCAACATGTTTCCATGTTAAAAAAAACAAATTTTTTGGAATTCCAAATTTGTAGTTTTCAGAATTAGGAACTTTGAAAGTACTAACACAATGTCCAGATGGTGCATAACCTCCGCTGGCCAACCGTAATCCTTATTTGCTCATTATAAAGGCATTTTCTAATAAATGCACATCGCATCAGTGGCAACATCGAAGAAAGGAGACGACGAGCGGTAGTAATCTGTCCGTGTAATACAAAAAATACACATACAACAATTCGATACAAACATAGATGTAGATACTCTTCATCAAATGAAAGAAAAAGAAAAAGGAGAAACCTAGTTTCTTCCTTTTACTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>368 286 212 72 62</canonical_bands>
                <polymorphic_bands>654 212 72 62</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAATCAAGTGATGTCTGAATA</pcr_primer_p1>
		<pcr_primer_p2>GATCATCATAATTCTTTCAGGACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAAATCAAGTGATGTCTGAATAATTGTAATGCTCTTCCACGAGAAGTCCCATCATGGAATTGAAAACCGAATTATCAGTACTTTTTTATTTTTCAATTGTTCAGGATCCACCACATCGACTGGTTTTGTAAGGATTTCAACACCATTGGTTGTAGTCAAGATTTGGAACCGTGACATCTACGTCAGACTACCCGGGCTGGGTCCTGTGTCAAGTTATTATAAAGTAGTCCTGAAAGAATTATGATGATC</canonical_amplicon>
		<polymorphic_amplicon>GGAAATCAAGTGATGTCTGAATAATTGTAATGCTCTTCCACGAGAAGTCCCATCATGGAATTGAAAACCGAATTATCAGTACTTTTTTATTTTTCAATTGTTCAGGATCCACCACATCGACTGGTTTTGTAAGGATTTCAACACCATTGGTTGTAGTCAAGATTTGGARCCGTGACATCTACGTCAGACTACCCGGGCTGGGTCCTGTGTCAAGTTATTATAAAGTAGTCCTGAAAGAATTATGATGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3612</snp_id>
        <super_contig>c001701441.Contig1</super_contig>
        <contig_pos>25161</contig_pos>
        <strand>+</strand>
        <context>CTTAAAGTTC[C/T]TTGAGGAGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATTATAAAGTAGTCCTGAAAGAATTATGATGATCTTATCTTAAAGTTC</left_flank>
        <right_flank>TTGAGGAGTAGCTGGAAGTGCTTCAGATTCTCTTTTTGCTTAATCTTTTT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCACGGCCACCGGAATTTCTTTTCCACGACTCCAACTGTTTGTACCAGCTTAAAAACTAACATTGTTGATTAACAAAAAGAAACAACTTTCAATTCTTTTCTGTTTTCACAAGTTGACCTAATTCAACGCAATCAAAATAGTGAAATTCGGTCGTCATGGCTCGTTACTCATCTTACGTCACCTTTTCTCAGACAGAATTTCCTTCGTTAACCTTCTACAACATTTTTCAAAAGGGAAATCAAGTGATGTCTGAATAATTGTAATGCTCTTCCACGAGAAGTCCCATCATGGAATTGAAAACCGAATTATCAGTACTTTTTTATTTTTCAATTGTTCAGGATCCACCACATCGACTGGTTTTGTAAGGATTTCAACACCATTGGTTGTAGTCAAGATTTGGAACCGTGACATCTACGTCAGACTACCCGGGCTGGGTCCTGTGTCAAGTTATTATAAAGTAGTCCTGAAAGAATTATGATGATCTTATCTTAAAGTTCTTTGAGGAGTAGCTGGAAGTGCTTCAGATTCTCTTTTTGCTTAATCTTTTTTTTTCATTATCTTTATTTTCAACATGTTTCCATGTTAAAAAAAACAAATTTTTTGGAATTCCAAATTTGTAGTTTTCAGAATTAGGAACTTTGAAAGTACTAACACAATGTCCAGATGGTGCATAACCTCCGCTGGCCAACCGTAATCCTTATTTGCTCATTATAAAGGCATTTTCTAATAAATGCACATCGCATCAGTGGCAACATCGAAGAAAGGAGACGACGAGCGGTAGTAATCTGTCCGTGTAATACAAAAAATACACATACAACAATTCGATACAAACATAGATGTAGATACTCTTCATCAAATGAAAGAAAAAGAAAAAGGAGAAACCTAGTTTCTTCCTTTTACTCAAATCTATTTTCTCTGTAATTACATCAAAAATGACCTCCCAGAAGCCGTGAAGATGAGCAGTCAATTTGGAGAGGGAAATCCTTTTAGTTCCAAAT</canonical>
            <polymorphic>GCCACGGCCACCGGAATTTCTTTTCCACGACTCCAACTGTTTGTACCAGCTTAAAAACTAACATTGTTGATTAACAAAAAGAAACAACTTTCAATTCTTTTCTGTTTTCACAAGTTGACCTAATTCAACGCAATCAAAATAGTGAAATTCGGTCGTCATGGCTCGTTACTCATCTTACGTCACCTTTTCTCAGACAGAATTTCCTTCGTTAACCTTCTACAACATTTTTCAAAAGGGAAATCAAGTGATGTCTGAATAATTGTAATGCTCTTCCACGAGAAGTCCCATCATGGAATTGAAAACCGAATTATCAGTACTTTTTTATTTTTCAATTGTTCAGGATCCACCACATCGACTGGTTTTGTAAGGATTTCAACACCATTGGTTGTAGTCAAGATTTGGAACCGTGACATCTACGTCAGACTACCCGGGCTGGGTCCTGTGTCAAGTTATTATAAAGTAGTCCTGAAAGAATTATGATGATCTTATCTTAAAGTTCYTTGAGGAGTAGCTGGAAGTGCTTCAGATTCTCTTTTTGCTTAATCTTTTTTTTTCATTATCTTTATTTTCAACATGTTTCCATGTTAAAAAAAACAAATTTTTTGGAATTCCAAATTTGTAGTTTTCAGAATTAGGAACTTTGAAAGTACTAACACAATGTCCAGATGGTGCATAACCTCCGCTGGCCAACCGTAATCCTTATTTGCTCATTATAAAGGCATTTTCTAATAAATGCACATCGCATCAGTGGCAACATCGAAGAAAGGAGACGACGAGCGGTAGTAATCTGTCCGTGTAATACAAAAAATACACATACAACAATTCGATACAAACATAGATGTAGATACTCTTCATCAAATGAAAGAAAAAGAAAAAGGAGAAACCTAGTTTCTTCCTTTTACTCAAATCTATTTTCTCTGTAATTACATCAAAAATGACCTCCCAGAAGCCGTGAAGATGAGCAGTCAATTTGGAGAGGGAAATCCTTTTAGTTCCAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTGACATCTACGTCAGACTAC</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAGTTCCTAATTCTGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CGTGACATCTACGTCAGACTACCCGGGCTGGGTCCTGTGTCAAGTTATTATAAAGTAGTCCTGAAAGAATTATGATGATCTTATCTTAAAGTTCTTTGAGGAGTAGCTGGAAGTGCTTCAGATTCTCTTTTTGCTTAATCTTTTTTTTTCATTATCTTTATTTTCAACATGTTTCCATGTTAAAAAAAACAAATTTTTTGGAATTCCAAATTTGTAGTTTTCAGAATTAGGAACTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>CGTGACATCTACGTCAGACTACCCGGGCTGGGTCCTGTGTCAAGTTATTATAAAGTAGTCCTGAAAGAATTATGATGATCTTATCTTAAAGTTCYTTGAGGAGTAGCTGGAAGTGCTTCAGATTCTCTTTTTGCTTAATCTTTTTTTTTCATTATCTTTATTTTCAACATGTTTCCATGTTAAAAAAAACAAATTTTTTGGAATTCCAAATTTGTAGTTTTCAGAATTAGGAACTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3613</snp_id>
        <super_contig>c001701441.Contig1</super_contig>
        <contig_pos>26425</contig_pos>
        <strand>+</strand>
        <context>ATTGTATTGT[C/T]TCAATTTTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACCCGGAGTGGATTGTTGCGCATCCATCCCCCACTCCAAATTGTATTGT</left_flank>
        <right_flank>TCAATTTTCACCTTTTTACCCACTTTCAAAAAACTATCTATTGATTTTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAAGTAAGCTCGAAGTTGACGGTTTCAGTGGGCTTCTATTATAGGAAATACGGTTAGAATTTCCGATCGAAAACATTTTGTGAAATCAGACATTGGTCGAATCTGAATTTTTTGCCTTGAGTGAACGAAGAGCTTTAGAAACCCTCTCACAAATTCTGAATTCTAGCTGAGAAGCTCCTAGATACTCCATGCATACCCATCCGAACCGCCCATTCCGAAAAGTACAATTCCATCCCTCTGACCTTTTCCTTTACAGTTCGTTGAAAAAATCTCAGGTTACCTGTGTCAATTGAAAGGAATCTGCGGAGCTCATTGCTTCCGTGTGCATCTCTTTCTTCGTTTTCCAAACAGACAGTACATCTTGTTCTTCATTTTGTCCCTCTCCCTAGCTTCTTCTTATTCTACAGCTTGTTCACACACACAAGTACATACGTACACAAAAATAAATACCCGGAGTGGATTGTTGCGCATCCATCCCCCACTCCAAATTGTATTGTCTCAATTTTCACCTTTTTACCCACTTTCAAAAAACTATCTATTGATTTTTTTTTTCATCGAAACCGTTTTCAGCACATCTAGAAACATCGAGTCGAAACTCCAGCGATGTCGTCGCAAGTTGGAGCGATCAACTCGGTGAATGCGCTCATTTCGAGGGTATTCGTTCAGCCCAAAGGTGATTTGGTGAGTTGTTTTTTTGACGATCTGGTTGAATTACAGTAATCCGAAACACAAAGCGGTTTAATACACAAAGAAGAACACATGAGTTCTGGAGGAACCCAAAATCATTCTGATCTATTTGTTGAACGAAATTTCATGCTCCTTCATGTTTGGGCTTAACTAACTCGATTTCTGTCAAAGATATTAAAGTTTTGTAAACTAATAAATTACTTATCATAATGTAAAAAATTTTTCATCAGTTGGCAATATTTTGATATCTTTCACAGGAATCGAAATAATTAAGCTCAAAGTTGATGGTTTGGGTCGGCTTCTATTAGAGA</canonical>
            <polymorphic>GATAAGTAAGCTCGAAGTTGACGGTTTCAGTGGGCTTCTATTATAGGAAATACGGTTAGAATTTCCGATCGAAAACATTTTGTGAAATCAGACATTGGTCGAATCTGAATTTTTTGCCTTGAGTGAACGAAGAGCTTTAGAAACCCTCTCACAAATTCTGAATTCTAGCTGAGAAGCTCCTAGATACTCCATGCATACCCATCCGAACCGCCCATTCCGAAAAGTACAATTCCATCCCTCTGACCTTTTCCTTTACAGTTCGTTGAAAAAATCTCAGGTTACCTGTGTCAATTGAAAGGAATCTGCGGAGCTCATTGCTTCCGTGTGCATCTCTTTCTTCGTTTTCCAAACAGACAGTACATCTTGTTCTTCATTTTGTCCCTCTCCCTAGCTTCTTCTTATTCTACAGCTTGTTCACACACACAAGTACATACGTACACAAAAATAAATACCCGGAGTGGATTGTTGCGCATCCATCCCCCACTCCAAATTGTATTGTYTCAATTTTCACCTTTTTACCCACTTTCAAAAAACTATCTATTGATTTTTTTTTTCATCGAAACCGTTTTCAGCACATCTAGAAACATCGAGTCGAAACTCCAGCGATGTCGTCGCAAGTTGGAGCGATCAACTCGGTGAATGCGCTCATTTCGAGGGTATTCGTTCAGCCCAAAGGTGATTTGGTGAGTTGTTTTTTTGACGATCTGGTTGAATTACAGTAATCCGAAACACAAAGCGGTTTAATACACAAAGAAGAACACATGAGTTCTGGAGGAACCCAAAATCATTCTGATCTATTTGTTGAACGAAATTTCATGCTCCTTCATGTTTGGGCTTAACTAACTCGATTTCTGTCAAAGATATTAAAGTTTTGTAAACTAATAAATTACTTATCATAATGTAAAAAATTTTTCATCAGTTGGCAATATTTTGATATCTTTCACAGGAATCGAAATAATTAAGCTCAAAGTTGATGGTTTGGGTCGGCTTCTATTAGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGACAGTACATCTTGTTCTTCA</pcr_primer_p1>
		<pcr_primer_p2>GAGTTTCGACTCGATGTTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGACAGTACATCTTGTTCTTCATTTTGTCCCTCTCCCTAGCTTCTTCTTATTCTACAGCTTGTTCACACACACAAGTACATACGTACACAAAAATAAATACCCGGAGTGGATTGTTGCGCATCCATCCCCCACTCCAAATTGTATTGTCTCAATTTTCACCTTTTTACCCACTTTCAAAAAACTATCTATTGATTTTTTTTTTCATCGAAACCGTTTTCAGCACATCTAGAAACATCGAGTCGAAACTC</canonical_amplicon>
		<polymorphic_amplicon>CAGACAGTACATCTTGTTCTTCATTTTGTCCCTCTCCCTAGCTTCTTCTTATTCTACAGCTTGTTCACACACACAAGTACATACGTACACAAAAATAAATACCCGGAGTGGATTGTTGCGCATCCATCCCCCACTCCAAATTGTATTGTYTCAATTTTCACCTTTTTACCCACTTTCAAAAAACTATCTATTGATTTTTTTTTTCATCGAAACCGTTTTCAGCACATCTAGAAACATCGAGTCGAAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3614</snp_id>
        <super_contig>c001701441.Contig1</super_contig>
        <contig_pos>30431</contig_pos>
        <strand></strand>
        <context>TCTGAAAAAG[C/T]CTTATTCAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATATGTATGGAATCATAAGTTTCGGATTAAAAAATCATTTCTGAAAAAG</left_flank>
        <right_flank>CTTATTCAAGTTCCGTGTTATCAAGAATCCAATGAGAGTAATCTTTTAAG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGGCCCAATTGAAGCCGACAACGATTAGTCCCTAGATCAGGAATCCAACAAAACATATCAAACCCAAAAATATATTTCTAGTAGTTCTCGTACTTGTACTAAACTTCATCACAAGAAAATAAGTCAGCTCCGTGCACGTCTTCAGATGACATTCTGATGACTTCCTTCCCTTTCTTGTCTTCTTGATTCTCAGCGACTTCTTCTAGAACCGAAAGAATTCATATTCTTGACGGAACCAGAAAGGACTTCTGGGATTTCACGTCATCATAAATCTTGACACGTCGGAGGCGTTTAAATGAAAAAACAAGTGTGAATTCTGAATTCTCTAGAGACTTTTGTTTGAGGTTCTTGGTTAGATTTTTGGTTCTGTTCTCGAGTTAGAAAAAGTGAGAGGATCGGGTTTAGATTGAAGTGAATCTTGTGTTTTGATTGAAATGGAATGTCATCTGATATGTATGGAATCATAAGTTTCGGATTAAAAAATCATTTCTGAAAAAGCCTTATTCAAGTTCCGTGTTATCAAGAATCCAATGAGAGTAATCTTTTAAGTAAAATGCAAAAGAGGTGTACCAGACGTCATACTATACATTTCTTTTCAAAAATGTGTCAGACATCTTTGAAAAACGGTGATGAATTGACACGAAAATGAGTTCCTCGAATGATAGGGTGCATGTTTTCATGATGGCTAAGAAGAGGGCGTTAGGGTTTTCCAAATTTCTATTCCATTTTCCATTTTTCTCCGGAATCCTAGAATATTCAATTATTTCTCTTGAACCCCAAAGAGAAAACTATGACTAGGCAGGCCATTTGTTTTTAATCCAAATAGTTAACCATTGGGTTTCGCCCCAAGCATTTTGTGGTACATTTTCTCAAGATTAAAACAGCTAAAAACGTCGGTTGACGCTGAGATCAACATCTTGTGATTTTAGTAGAAGAAGAAGAACACGATGGTTTGCGTAAGTTTCCAAAAGTGATCATTTTGTAGATCATAAACAACTC</canonical>
            <polymorphic>AGGGCCCAATTGAAGCCGACAACGATTAGTCCCTAGATCAGGAATCCAACAAAACATATCAAACCCAAAAATATATTTCTAGTAGTTCTCGTACTTGTACTAAACTTCATCACAAGAAAATAAGTCAGCTCCGTGCACGTCTTCAGATGACATTCTGATGACTTCCTTCCCTTTCTTGTCTTCTTGATTCTCAGCGACTTCTTCTAGAACCGAAAGAATTCATATTCTTGACGGAACCAGAAAGGACTTCTGGGATTTCACGTCATCATAAATCTTGACACGTCGGAGGCGTTTAAATGAAAAAACAAGTGTGAATTCTGAATTCTCTAGAGACTTTTGTTTGAGGTTCTTGGTTAGATTTTTGGTTCTGTTCTCGAGTTAGAAAAAGTGAGAGGATCGGGTTTAGATTGAAGTGAATCTTGTGTTTTGATTGAAATGGAATGTCATCTGATATGTATGGAATCATAAGTTTCGGATTAAAAAATCATTTCTGAAAAAGYCTTATTCAAGTTCCGTGTTATCAAGAATCCAATGAGAGTAATCTTTTAAGTAAAATGCAAAAGAGGTGTACCAGACGTCATACTATACATTTCTTTTCAAAAATGTGTCAGACATCTTTGAAAAACGGTGATGAATTGACACGAAAATGAGTTCCTCGAATGATAGGGTGCATGTTTTCATGATGGCTAAGAAGAGGGCGTTAGGGTTTTCCAAATTTCTATTCCATTTTCCATTTTTCTCCGGAATCCTAGAATATTCAATTATTTCTCTTGAACCCCAAAGAGAAAACTATGACTAGGCAGGCCATTTGTTTTTAATCCAAATAGTTAACCATTGGGTTTCGCCCCAAGCATTTTGTGGTACATTTTCTCAAGATTAAAACAGCTAAAAACGTCGGTTGACGCTGAGATCAACATCTTGTGATTTTAGTAGAAGAAGAAGAACACGATGGTTTGCGTAAGTTTCCAAAAGTGATCATTTTGTAGATCATAAACAACTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>371 187 118 115 113 81 11 4</canonical_bands>
                <polymorphic_bands>558 118 115 113 81 11 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTGAGGTTCTTGGTTAGATTT</pcr_primer_p1>
		<pcr_primer_p2>ATAGTATGACGTCTGGTACACCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTTGAGGTTCTTGGTTAGATTTTTGGTTCTGTTCTCGAGTTAGAAAAAGTGAGAGGATCGGGTTTAGATTGAAGTGAATCTTGTGTTTTGATTGAAATGGAATGTCATCTGATATGTATGGAATCATAAGTTTCGGATTAAAAAATCATTTCTGAAAAAGCCTTATTCAAGTTCCGTGTTATCAAGAATCCAATGAGAGTAATCTTTTAAGTAAAATGCAAAAGAGGTGTACCAGACGTCATACTAT</canonical_amplicon>
		<polymorphic_amplicon>GTTTGAGGTTCTTGGTTAGATTTTTGGTTCTGTTCTCGAGTTAGAAAAAGTGAGAGGATCGGGTTTAGATTGAAGTGAATCTTGTGTTTTGATTGAAATGGAATGTCATCTGATATGTATGGAATCATAAGTTTCGGATTAAAAAATCATTTCTGAAAAAGYCTTATTCAAGTTCCGTGTTATCAAGAATCCAATGAGAGTAATCTTTTAAGTAAAATGCAAAAGAGGTGTACCAGACGTCATACTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3615</snp_id>
        <super_contig>c001701441.Contig1</super_contig>
        <contig_pos>30462</contig_pos>
        <strand></strand>
        <context>TCAAGAATCC[A/C]ATGAGAGTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAATCATTTCTGAAAAAGCCTTATTCAAGTTCCGTGTTATCAAGAATCC</left_flank>
        <right_flank>ATGAGAGTAATCTTTTAAGTAAAATGCAAAAGAGGTGTACCAGACGTCAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTAGATCAGGAATCCAACAAAACATATCAAACCCAAAAATATATTTCTAGTAGTTCTCGTACTTGTACTAAACTTCATCACAAGAAAATAAGTCAGCTCCGTGCACGTCTTCAGATGACATTCTGATGACTTCCTTCCCTTTCTTGTCTTCTTGATTCTCAGCGACTTCTTCTAGAACCGAAAGAATTCATATTCTTGACGGAACCAGAAAGGACTTCTGGGATTTCACGTCATCATAAATCTTGACACGTCGGAGGCGTTTAAATGAAAAAACAAGTGTGAATTCTGAATTCTCTAGAGACTTTTGTTTGAGGTTCTTGGTTAGATTTTTGGTTCTGTTCTCGAGTTAGAAAAAGTGAGAGGATCGGGTTTAGATTGAAGTGAATCTTGTGTTTTGATTGAAATGGAATGTCATCTGATATGTATGGAATCATAAGTTTCGGATTAAAAAATCATTTCTGAAAAAGCCTTATTCAAGTTCCGTGTTATCAAGAATCCAATGAGAGTAATCTTTTAAGTAAAATGCAAAAGAGGTGTACCAGACGTCATACTATACATTTCTTTTCAAAAATGTGTCAGACATCTTTGAAAAACGGTGATGAATTGACACGAAAATGAGTTCCTCGAATGATAGGGTGCATGTTTTCATGATGGCTAAGAAGAGGGCGTTAGGGTTTTCCAAATTTCTATTCCATTTTCCATTTTTCTCCGGAATCCTAGAATATTCAATTATTTCTCTTGAACCCCAAAGAGAAAACTATGACTAGGCAGGCCATTTGTTTTTAATCCAAATAGTTAACCATTGGGTTTCGCCCCAAGCATTTTGTGGTACATTTTCTCAAGATTAAAACAGCTAAAAACGTCGGTTGACGCTGAGATCAACATCTTGTGATTTTAGTAGAAGAAGAAGAACACGATGGTTTGCGTAAGTTTCCAAAAGTGATCATTTTGTAGATCATAAACAACTCAAGTATGGAAATTTAAGAGAGGAGAAATATC</canonical>
            <polymorphic>CCTAGATCAGGAATCCAACAAAACATATCAAACCCAAAAATATATTTCTAGTAGTTCTCGTACTTGTACTAAACTTCATCACAAGAAAATAAGTCAGCTCCGTGCACGTCTTCAGATGACATTCTGATGACTTCCTTCCCTTTCTTGTCTTCTTGATTCTCAGCGACTTCTTCTAGAACCGAAAGAATTCATATTCTTGACGGAACCAGAAAGGACTTCTGGGATTTCACGTCATCATAAATCTTGACACGTCGGAGGCGTTTAAATGAAAAAACAAGTGTGAATTCTGAATTCTCTAGAGACTTTTGTTTGAGGTTCTTGGTTAGATTTTTGGTTCTGTTCTCGAGTTAGAAAAAGTGAGAGGATCGGGTTTAGATTGAAGTGAATCTTGTGTTTTGATTGAAATGGAATGTCATCTGATATGTATGGAATCATAAGTTTCGGATTAAAAAATCATTTCTGAAAAAGCCTTATTCAAGTTCCGTGTTATCAAGAATCCMATGAGAGTAATCTTTTAAGTAAAATGCAAAAGAGGTGTACCAGACGTCATACTATACATTTCTTTTCAAAAATGTGTCAGACATCTTTGAAAAACGGTGATGAATTGACACGAAAATGAGTTCCTCGAATGATAGGGTGCATGTTTTCATGATGGCTAAGAAGAGGGCGTTAGGGTTTTCCAAATTTCTATTCCATTTTCCATTTTTCTCCGGAATCCTAGAATATTCAATTATTTCTCTTGAACCCCAAAGAGAAAACTATGACTAGGCAGGCCATTTGTTTTTAATCCAAATAGTTAACCATTGGGTTTCGCCCCAAGCATTTTGTGGTACATTTTCTCAAGATTAAAACAGCTAAAAACGTCGGTTGACGCTGAGATCAACATCTTGTGATTTTAGTAGAAGAAGAAGAACACGATGGTTTGCGTAAGTTTCCAAAAGTGATCATTTTGTAGATCATAAACAACTCAAGTATGGAAATTTAAGAGAGGAGAAATATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTGAGGTTCTTGGTTAGATTT</pcr_primer_p1>
		<pcr_primer_p2>ATAGTATGACGTCTGGTACACCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTTGAGGTTCTTGGTTAGATTTTTGGTTCTGTTCTCGAGTTAGAAAAAGTGAGAGGATCGGGTTTAGATTGAAGTGAATCTTGTGTTTTGATTGAAATGGAATGTCATCTGATATGTATGGAATCATAAGTTTCGGATTAAAAAATCATTTCTGAAAAAGCCTTATTCAAGTTCCGTGTTATCAAGAATCCAATGAGAGTAATCTTTTAAGTAAAATGCAAAAGAGGTGTACCAGACGTCATACTAT</canonical_amplicon>
		<polymorphic_amplicon>GTTTGAGGTTCTTGGTTAGATTTTTGGTTCTGTTCTCGAGTTAGAAAAAGTGAGAGGATCGGGTTTAGATTGAAGTGAATCTTGTGTTTTGATTGAAATGGAATGTCATCTGATATGTATGGAATCATAAGTTTCGGATTAAAAAATCATTTCTGAAAAAGCCTTATTCAAGTTCCGTGTTATCAAGAATCCMATGAGAGTAATCTTTTAAGTAAAATGCAAAAGAGGTGTACCAGACGTCATACTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3616</snp_id>
        <super_contig>c001701441.Contig1</super_contig>
        <contig_pos>30761</contig_pos>
        <strand></strand>
        <context>CCAAATAGTT[A/T]ACCATTGGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAGAGAAAACTATGACTAGGCAGGCCATTTGTTTTTAATCCAAATAGTT</left_flank>
        <right_flank>ACCATTGGGTTTCGCCCCAAGCATTTTGTGGTACATTTTCTCAAGATTAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGACTTTTGTTTGAGGTTCTTGGTTAGATTTTTGGTTCTGTTCTCGAGTTAGAAAAAGTGAGAGGATCGGGTTTAGATTGAAGTGAATCTTGTGTTTTGATTGAAATGGAATGTCATCTGATATGTATGGAATCATAAGTTTCGGATTAAAAAATCATTTCTGAAAAAGCCTTATTCAAGTTCCGTGTTATCAAGAATCCAATGAGAGTAATCTTTTAAGTAAAATGCAAAAGAGGTGTACCAGACGTCATACTATACATTTCTTTTCAAAAATGTGTCAGACATCTTTGAAAAACGGTGATGAATTGACACGAAAATGAGTTCCTCGAATGATAGGGTGCATGTTTTCATGATGGCTAAGAAGAGGGCGTTAGGGTTTTCCAAATTTCTATTCCATTTTCCATTTTTCTCCGGAATCCTAGAATATTCAATTATTTCTCTTGAACCCCAAAGAGAAAACTATGACTAGGCAGGCCATTTGTTTTTAATCCAAATAGTTAACCATTGGGTTTCGCCCCAAGCATTTTGTGGTACATTTTCTCAAGATTAAAACAGCTAAAAACGTCGGTTGACGCTGAGATCAACATCTTGTGATTTTAGTAGAAGAAGAAGAACACGATGGTTTGCGTAAGTTTCCAAAAGTGATCATTTTGTAGATCATAAACAACTCAAGTATGGAAATTTAAGAGAGGAGAAATATCTGAATGATCAGAAAATAGAAATTCATTTTAAGAATCTCGGACTTTTGAATTATTCAAAATGTTGAAGGGGTTTTCATTTGAATCATTCAGATGAGCTTTCAGTTGAAGATGTTTAAAGTTCTGTCTACTAGACTCTCACGATAGGCACGTACCCTCAAAATCAGAAGAACAGAACATTTTTTAGATAAAGCCGTTGAAAAGGGGACTCCGGACCAAAATTTTTATCACATAAAAATTTTCAAATAGTTGTTTATCCTGCTGATATTATTGCGAGAAATTGAAATACCCGAAAACGACGC</canonical>
            <polymorphic>AGACTTTTGTTTGAGGTTCTTGGTTAGATTTTTGGTTCTGTTCTCGAGTTAGAAAAAGTGAGAGGATCGGGTTTAGATTGAAGTGAATCTTGTGTTTTGATTGAAATGGAATGTCATCTGATATGTATGGAATCATAAGTTTCGGATTAAAAAATCATTTCTGAAAAAGCCTTATTCAAGTTCCGTGTTATCAAGAATCCAATGAGAGTAATCTTTTAAGTAAAATGCAAAAGAGGTGTACCAGACGTCATACTATACATTTCTTTTCAAAAATGTGTCAGACATCTTTGAAAAACGGTGATGAATTGACACGAAAATGAGTTCCTCGAATGATAGGGTGCATGTTTTCATGATGGCTAAGAAGAGGGCGTTAGGGTTTTCCAAATTTCTATTCCATTTTCCATTTTTCTCCGGAATCCTAGAATATTCAATTATTTCTCTTGAACCCCAAAGAGAAAACTATGACTAGGCAGGCCATTTGTTTTTAATCCAAATAGTTWACCATTGGGTTTCGCCCCAAGCATTTTGTGGTACATTTTCTCAAGATTAAAACAGCTAAAAACGTCGGTTGACGCTGAGATCAACATCTTGTGATTTTAGTAGAAGAAGAAGAACACGATGGTTTGCGTAAGTTTCCAAAAGTGATCATTTTGTAGATCATAAACAACTCAAGTATGGAAATTTAAGAGAGGAGAAATATCTGAATGATCAGAAAATAGAAATTCATTTTAAGAATCTCGGACTTTTGAATTATTCAAAATGTTGAAGGGGTTTTCATTTGAATCATTCAGATGAGCTTTCAGTTGAAGATGTTTAAAGTTCTGTCTACTAGACTCTCACGATAGGCACGTACCCTCAAAATCAGAAGAACAGAACATTTTTTAGATAAAGCCGTTGAAAAGGGGACTCCGGACCAAAATTTTTATCACATAAAAATTTTCAAATAGTTGTTTATCCTGCTGATATTATTGCGAGAAATTGAAATACCCGAAAACGACGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTTAAC</site>
                <isoschizomers>
                    <enzyme>BstHPI</enzyme>
                    <enzyme>HpaI</enzyme>
                    <enzyme>KspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>499 430 71</canonical_bands>
                <polymorphic_bands>570 430</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>269 186 147 136 85 69 49 46 13</canonical_bands>
                <polymorphic_bands>269 186 147 136 85 69 62 46</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGGGTTTTCCAAATTTCTATTC</pcr_primer_p1>
		<pcr_primer_p2>CATCGTGTTCTTCTTCTTCTACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGGGTTTTCCAAATTTCTATTCCATTTTCCATTTTTCTCCGGAATCCTAGAATATTCAATTATTTCTCTTGAACCCCAAAGAGAAAACTATGACTAGGCAGGCCATTTGTTTTTAATCCAAATAGTTAACCATTGGGTTTCGCCCCAAGCATTTTGTGGTACATTTTCTCAAGATTAAAACAGCTAAAAACGTCGGTTGACGCTGAGATCAACATCTTGTGATTTTAGTAGAAGAAGAAGAACACGATG</canonical_amplicon>
		<polymorphic_amplicon>TAGGGTTTTCCAAATTTCTATTCCATTTTCCATTTTTCTCCGGAATCCTAGAATATTCAATTATTTCTCTTGAACCCCAAAGAGAAAACTATGACTAGGCAGGCCATTTGTTTTTAATCCAAATAGTTWACCATTGGGTTTCGCCCCAAGCATTTTGTGGTACATTTTCTCAAGATTAAAACAGCTAAAAACGTCGGTTGACGCTGAGATCAACATCTTGTGATTTTAGTAGAAGAAGAAGAACACGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3617</snp_id>
        <super_contig>c001701441.Contig1</super_contig>
        <contig_pos>70350</contig_pos>
        <strand>+</strand>
        <context>TATTGTGACG[A/G]TTTAATTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCTAATCAGCTCTGTTATATATCGGAGGACGTTTCTCCATATTGTGACG</left_flank>
        <right_flank>TTTAATTGAAGTGTCTCCTGGCGCGATGCCAGGTAATTGTTAGAAGGCGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCAGTTGTTCATCTATTCGGAAAGGCATTTTGTCTCAGCTGCTACAGATGTCGAGGGTGTGATAAAATTCTTCATTACAAGTATGTTTTCTGAAAATGCGATATAAAAAGTGATTGGTTTCAGAGACAAAGTCATGGAGCTGGATATGATGCCATTGTGTAAAAAATGTATTGGCAATAAGACATTCCAGAAGTCGTTGAAGTACAAAAATCAGTAAAAAACCACCAATATTTTTTTGGGTTCATTTAATGTTTTATTCCTTGTTGAAGCTGTTTCTGAGTCAGTATTCCATGTGCCTATATGATGAATTTGAAATCTTTAAAATTATTTTTTTTAAATAAAAAATATAATTTTTTTCCGGGTCAGTTAAAAAAAAGGCCCAGTATCAAAATTTTTCATAATGTCGCAATAAGATCCAAGGTCAAGTTTGCACATCAAGTAAATAAAATCTAATCAGCTCTGTTATATATCGGAGGACGTTTCTCCATATTGTGACGATTTAATTGAAGTGTCTCCTGGCGCGATGCCAGGTAATTGTTAGAAGGCGTCCTTGGACCGGTGGGTGACTTGGCGGGAAGACACCTACACGAAGGATGAACCGTCACTACCATGATGTCCACTTGACTCTCTATTTCAAATGTCCTGGTTTTGCATTGACTCTTCTCTTCCTTCCTTTTTTGTTCTGTTCCACCACATTGGATTTTGATTCTTTTCTGTTTCAATTGAAGTTTTCTGGATGAATGAATGATGACTTATTCCATTCCAATTGTTTGTTTCGTGTCCGACAAACCGTTTACCCTTTTCTCCGTTCAGATCGGATTACCCGCACGAAGAGGAGGAGAACATCGCTACACCTCGAAAACCAATTTATGGCATTAAATGCCGCCCTCGTGTGAATTATTCATTCTTCATTCACTTTCCGCCACCCAACAGCTTCATTTGTTCACCTCGTTAAGAAGAACTGACTGAGTGTGTCTTCCGTACTTGCATCTAGTTTA</canonical>
            <polymorphic>GAGCAGTTGTTCATCTATTCGGAAAGGCATTTTGTCTCAGCTGCTACAGATGTCGAGGGTGTGATAAAATTCTTCATTACAAGTATGTTTTCTGAAAATGCGATATAAAAAGTGATTGGTTTCAGAGACAAAGTCATGGAGCTGGATATGATGCCATTGTGTAAAAAATGTATTGGCAATAAGACATTCCAGAAGTCGTTGAAGTACAAAAATCAGTAAAAAACCACCAATATTTTTTTGGGTTCATTTAATGTTTTATTCCTTGTTGAAGCTGTTTCTGAGTCAGTATTCCATGTGCCTATATGATGAATTTGAAATCTTTAAAATTATTTTTTTTAAATAAAAAATATAATTTTTTTCCGGGTCAGTTAAAAAAAAGGCCCAGTATCAAAATTTTTCATAATGTCGCAATAAGATCCAAGGTCAAGTTTGCACATCAAGTAAATAAAATCTAATCAGCTCTGTTATATATCGGAGGACGTTTCTCCATATTGTGACGRTTTAATTGAAGTGTCTCCTGGCGCGATGCCAGGTAATTGTTAGAAGGCGTCCTTGGACCGGTGGGTGACTTGGCGGGAAGACACCTACACGAAGGATGAACCGTCACTACCATGATGTCCACTTGACTCTCTATTTCAAATGTCCTGGTTTTGCATTGACTCTTCTCTTCCTTCCTTTTTTGTTCTGTTCCACCACATTGGATTTTGATTCTTTTCTGTTTCAATTGAAGTTTTCTGGATGAATGAATGATGACTTATTCCATTCCAATTGTTTGTTTCGTGTCCGACAAACCGTTTACCCTTTTCTCCGTTCAGATCGGATTACCCGCACGAAGAGGAGGAGAACATCGCTACACCTCGAAAACCAATTTATGGCATTAAATGCCGCCCTCGTGTGAATTATTCATTCTTCATTCACTTTCCGCCACCCAACAGCTTCATTTGTTCACCTCGTTAAGAAGAACTGACTGAGTGTGTCTTCCGTACTTGCATCTAGTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTTCATAATGTCGCAATAA</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAATAGAGAGTCAAGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTTTTCATAATGTCGCAATAAGATCCAAGGTCAAGTTTGCACATCAAGTAAATAAAATCTAATCAGCTCTGTTATATATCGGAGGACGTTTCTCCATATTGTGACGATTTAATTGAAGTGTCTCCTGGCGCGATGCCAGGTAATTGTTAGAAGGCGTCCTTGGACCGGTGGGTGACTTGGCGGGAAGACACCTACACGAAGGATGAACCGTCACTACCATGATGTCCACTTGACTCTCTATTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>AATTTTTCATAATGTCGCAATAAGATCCAAGGTCAAGTTTGCACATCAAGTAAATAAAATCTAATCAGCTCTGTTATATATCGGAGGACGTTTCTCCATATTGTGACGRTTTAATTGAAGTGTCTCCTGGCGCGATGCCAGGTAATTGTTAGAAGGCGTCCTTGGACCGGTGGGTGACTTGGCGGGAAGACACCTACACGAAGGATGAACCGTCACTACCATGATGTCCACTTGACTCTCTATTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3618</snp_id>
        <super_contig>c001701441.Contig1</super_contig>
        <contig_pos>72720</contig_pos>
        <strand></strand>
        <context>CTTGTATTAG[G/A]atgttcccaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTTAAAGGGGATTCTAACCAACTGGTTTTTTTGTTTTTTTCTTGTATTAG</left_flank>
        <right_flank>ATGTTCCCAAAATTATCTATTCTCATAAAATTGCTTCGAAAAAATTCGGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAACTGTATCTTTATCATAAATTAGCATTGCCCTTCACCCGATTCTTCGGCTCTTCTAAAAAGACGAAGAGAGAGTACTTCATCAAGAGAGAATCAGAGAATTCAACTCGTTTATCTTCCTGTCGCCGAACAACGCGCAAAGTCACCATCCACGAAATGTTTCACCAATTTGCACTTTCTCTGACCACACCATTGAACCATAGAAACTCCTGTTTACGGTGTTTTTTTTCAACTTCGGGAAAGGGCGTGGGAAAAACACGGTACATCAAAAAGAGCGAGGTGAGTTGAGGCGAAACGATTCCAATTTCTGAGGACGGCGTGTTGTATAGTCCTGAATAGAAACGAGTCAATGTATTCGATTCACTGATTTCTTCTCTTTATGATCTCCTCGTTCTTTTCATGTTTTTGTACCAGAAGGGACCCTGATCAGAACCGGGAAGAGAATACTGTTAAAGGGGATTCTAACCAACTGGTTTTTTTGTTTTTTTCTTGTATTAGGATGTTCCCAAAATTATCTATTCTCATAAAATTGCTTCGAAAAAATTCGGAAAAACACGAAATCCCTAAAAATGCCATCAATTCTCGTTTAAGTTGCCCACACAATGGCCTAGCACTAGGATTCCCGCGACCCTCTTGGACGAAAACTGGAGGCTCTTGCACACAGTTTTCAGAGATTTCCAAAATTTTCTGAACTTATAACCTTGTTTACCATAACCTTGTTTACAATAAAATACTTCTCTAAGTCTTAAACTGAAACATTATCATAACTCTTATTACATTCCAACACCTCCTCATCATCTAAACATCATCTAATTACATTCGCTTCATAGGTTTAGTTTCTTCTTCTTCTACTTTTTCTTCTGATTTAACACGAACAGATGTTTAATCAAATTTATGACGTGGCATTTTGGGCATTCGCATCCTCTTCAACACTAGCTGAATCCAGCTTTTCTCACACCAATACAATCAACTTTCCCACTCCTCCATCTGTATCTTTTT</canonical>
            <polymorphic>TGAACTGTATCTTTATCATAAATTAGCATTGCCCTTCACCCGATTCTTCGGCTCTTCTAAAAAGACGAAGAGAGAGTACTTCATCAAGAGAGAATCAGAGAATTCAACTCGTTTATCTTCCTGTCGCCGAACAACGCGCAAAGTCACCATCCACGAAATGTTTCACCAATTTGCACTTTCTCTGACCACACCATTGAACCATAGAAACTCCTGTTTACGGTGTTTTTTTTCAACTTCGGGAAAGGGCGTGGGAAAAACACGGTACATCAAAAAGAGCGAGGTGAGTTGAGGCGAAACGATTCCAATTTCTGAGGACGGCGTGTTGTATAGTCCTGAATAGAAACGAGTCAATGTATTCGATTCACTGATTTCTTCTCTTTATGATCTCCTCGTTCTTTTCATGTTTTTGTACCAGAAGGGACCCTGATCAGAACCGGGAAGAGAATACTGTTAAAGGGGATTCTAACCAACTGGTTTTTTTGTTTTTTTCTTGTATTAGRATGTTCCCAAAATTATCTATTCTCATAAAATTGCTTCGAAAAAATTCGGAAAAACACGAAATCCCTAAAAATGCCATCAATTCTCGTTTAAGTTGCCCACACAATGGCCTAGCACTAGGATTCCCGCGACCCTCTTGGACGAAAACTGGAGGCTCTTGCACACAGTTTTCAGAGATTTCCAAAATTTTCTGAACTTATAACCTTGTTTACCATAACCTTGTTTACAATAAAATACTTCTCTAAGTCTTAAACTGAAACATTATCATAACTCTTATTACATTCCAACACCTCCTCATCATCTAAACATCATCTAATTACATTCGCTTCATAGGTTTAGTTTCTTCTTCTTCTACTTTTTCTTCTGATTTAACACGAACAGATGTTTAATCAAATTTATGACGTGGCATTTTGGGCATTCGCATCCTCTTCAACACTAGCTGAATCCAGCTTTTCTCACACCAATACAATCAACTTTCCCACTCCTCCATCTGTATCTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACCGGGAAGAGAATACTG</pcr_primer_p1>
		<pcr_primer_p2>ACAAGGTTATGGTAAACAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>GAACCGGGAAGAGAATACTGTTAAAGGGGATTCTAACCAACTGGTTTTTTTGTTTTTTTCTTGTATTAGGATGTTCCCAAAATTATCTATTCTCATAAAATTGCTTCGAAAAAATTCGGAAAAACACGAAATCCCTAAAAATGCCATCAATTCTCGTTTAAGTTGCCCACACAATGGCCTAGCACTAGGATTCCCGCGACCCTCTTGGACGAAAACTGGAGGCTCTTGCACACAGTTTTCAGAGATTTCCAAAATTTTCTGAACTTATAACCTTGTTTACCATAACCTTGT</canonical_amplicon>
		<polymorphic_amplicon>GAACCGGGAAGAGAATACTGTTAAAGGGGATTCTAACCAACTGGTTTTTTTGTTTTTTTCTTGTATTAGRATGTTCCCAAAATTATCTATTCTCATAAAATTGCTTCGAAAAAATTCGGAAAAACACGAAATCCCTAAAAATGCCATCAATTCTCGTTTAAGTTGCCCACACAATGGCCTAGCACTAGGATTCCCGCGACCCTCTTGGACGAAAACTGGAGGCTCTTGCACACAGTTTTCAGAGATTTCCAAAATTTTCTGAACTTATAACCTTGTTTACCATAACCTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3619</snp_id>
        <super_contig>c001701441.Contig1</super_contig>
        <contig_pos>72673</contig_pos>
        <strand>+</strand>
        <context>GAATACTGTT[A/G]AAGGGGATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTTTGTACCAGAAGGGACCCTGATCAGAACCGGGAAGAGAATACTGTT</left_flank>
        <right_flank>AAGGGGATTCTAACCAACTGGTTTTTTTGTTTTTTTCTTGTATTAGGATG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTTTCACTTCCGAACACATTCCGGTTATACTGCGGCTTTTCTCTTTGAACTGTATCTTTATCATAAATTAGCATTGCCCTTCACCCGATTCTTCGGCTCTTCTAAAAAGACGAAGAGAGAGTACTTCATCAAGAGAGAATCAGAGAATTCAACTCGTTTATCTTCCTGTCGCCGAACAACGCGCAAAGTCACCATCCACGAAATGTTTCACCAATTTGCACTTTCTCTGACCACACCATTGAACCATAGAAACTCCTGTTTACGGTGTTTTTTTTCAACTTCGGGAAAGGGCGTGGGAAAAACACGGTACATCAAAAAGAGCGAGGTGAGTTGAGGCGAAACGATTCCAATTTCTGAGGACGGCGTGTTGTATAGTCCTGAATAGAAACGAGTCAATGTATTCGATTCACTGATTTCTTCTCTTTATGATCTCCTCGTTCTTTTCATGTTTTTGTACCAGAAGGGACCCTGATCAGAACCGGGAAGAGAATACTGTTAAAGGGGATTCTAACCAACTGGTTTTTTTGTTTTTTTCTTGTATTAGGATGTTCCCAAAATTATCTATTCTCATAAAATTGCTTCGAAAAAATTCGGAAAAACACGAAATCCCTAAAAATGCCATCAATTCTCGTTTAAGTTGCCCACACAATGGCCTAGCACTAGGATTCCCGCGACCCTCTTGGACGAAAACTGGAGGCTCTTGCACACAGTTTTCAGAGATTTCCAAAATTTTCTGAACTTATAACCTTGTTTACCATAACCTTGTTTACAATAAAATACTTCTCTAAGTCTTAAACTGAAACATTATCATAACTCTTATTACATTCCAACACCTCCTCATCATCTAAACATCATCTAATTACATTCGCTTCATAGGTTTAGTTTCTTCTTCTTCTACTTTTTCTTCTGATTTAACACGAACAGATGTTTAATCAAATTTATGACGTGGCATTTTGGGCATTCGCATCCTCTTCAACACTAGCTGAATCCAGCTTTTC</canonical>
            <polymorphic>ATGTTTCACTTCCGAACACATTCCGGTTATACTGCGGCTTTTCTCTTTGAACTGTATCTTTATCATAAATTAGCATTGCCCTTCACCCGATTCTTCGGCTCTTCTAAAAAGACGAAGAGAGAGTACTTCATCAAGAGAGAATCAGAGAATTCAACTCGTTTATCTTCCTGTCGCCGAACAACGCGCAAAGTCACCATCCACGAAATGTTTCACCAATTTGCACTTTCTCTGACCACACCATTGAACCATAGAAACTCCTGTTTACGGTGTTTTTTTTCAACTTCGGGAAAGGGCGTGGGAAAAACACGGTACATCAAAAAGAGCGAGGTGAGTTGAGGCGAAACGATTCCAATTTCTGAGGACGGCGTGTTGTATAGTCCTGAATAGAAACGAGTCAATGTATTCGATTCACTGATTTCTTCTCTTTATGATCTCCTCGTTCTTTTCATGTTTTTGTACCAGAAGGGACCCTGATCAGAACCGGGAAGAGAATACTGTTRAAGGGGATTCTAACCAACTGGTTTTTTTGTTTTTTTCTTGTATTAGGATGTTCCCAAAATTATCTATTCTCATAAAATTGCTTCGAAAAAATTCGGAAAAACACGAAATCCCTAAAAATGCCATCAATTCTCGTTTAAGTTGCCCACACAATGGCCTAGCACTAGGATTCCCGCGACCCTCTTGGACGAAAACTGGAGGCTCTTGCACACAGTTTTCAGAGATTTCCAAAATTTTCTGAACTTATAACCTTGTTTACCATAACCTTGTTTACAATAAAATACTTCTCTAAGTCTTAAACTGAAACATTATCATAACTCTTATTACATTCCAACACCTCCTCATCATCTAAACATCATCTAATTACATTCGCTTCATAGGTTTAGTTTCTTCTTCTTCTACTTTTTCTTCTGATTTAACACGAACAGATGTTTAATCAAATTTATGACGTGGCATTTTGGGCATTCGCATCCTCTTCAACACTAGCTGAATCCAGCTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>498 159 137 120 69 17</canonical_bands>
                <polymorphic_bands>635 159 120 69 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTTTTCATGTTTTTGTACCAG</pcr_primer_p1>
		<pcr_primer_p2>ACAAGGTTATGGTAAACAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>329</pcr_amplicon_size>
		<canonical_amplicon>TTCTTTTCATGTTTTTGTACCAGAAGGGACCCTGATCAGAACCGGGAAGAGAATACTGTTAAAGGGGATTCTAACCAACTGGTTTTTTTGTTTTTTTCTTGTATTAGGATGTTCCCAAAATTATCTATTCTCATAAAATTGCTTCGAAAAAATTCGGAAAAACACGAAATCCCTAAAAATGCCATCAATTCTCGTTTAAGTTGCCCACACAATGGCCTAGCACTAGGATTCCCGCGACCCTCTTGGACGAAAACTGGAGGCTCTTGCACACAGTTTTCAGAGATTTCCAAAATTTTCTGAACTTATAACCTTGTTTACCATAACCTTGT</canonical_amplicon>
		<polymorphic_amplicon>TTCTTTTCATGTTTTTGTACCAGAAGGGACCCTGATCAGAACCGGGAAGAGAATACTGTTRAAGGGGATTCTAACCAACTGGTTTTTTTGTTTTTTTCTTGTATTAGGATGTTCCCAAAATTATCTATTCTCATAAAATTGCTTCGAAAAAATTCGGAAAAACACGAAATCCCTAAAAATGCCATCAATTCTCGTTTAAGTTGCCCACACAATGGCCTAGCACTAGGATTCCCGCGACCCTCTTGGACGAAAACTGGAGGCTCTTGCACACAGTTTTCAGAGATTTCCAAAATTTTCTGAACTTATAACCTTGTTTACCATAACCTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3620</snp_id>
        <super_contig>c001701441.Contig1</super_contig>
        <contig_pos>72540</contig_pos>
        <strand>+</strand>
        <context>TGAGGACGGC[G/T]TGTTGTATAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAGAGCGAGGTGAGTTGAGGCGAAACGATTCCAATTTCTGAGGACGGC</left_flank>
        <right_flank>TGTTGTATAGTCCTGAATAGAAACGAGTCAATGTATTCGATTCACTGATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCTGTCTTTAGGGTTGATTTTCTGATCTTACACTTACATTCCAGAACCATGAATCAAGTAGACAACTTTTTAATGTCCCTTGTAAACCCAAATCGGATGACCACACACACTGACTCAAATACCGTTACGAAATGTTTCACTTCCGAACACATTCCGGTTATACTGCGGCTTTTCTCTTTGAACTGTATCTTTATCATAAATTAGCATTGCCCTTCACCCGATTCTTCGGCTCTTCTAAAAAGACGAAGAGAGAGTACTTCATCAAGAGAGAATCAGAGAATTCAACTCGTTTATCTTCCTGTCGCCGAACAACGCGCAAAGTCACCATCCACGAAATGTTTCACCAATTTGCACTTTCTCTGACCACACCATTGAACCATAGAAACTCCTGTTTACGGTGTTTTTTTTCAACTTCGGGAAAGGGCGTGGGAAAAACACGGTACATCAAAAAGAGCGAGGTGAGTTGAGGCGAAACGATTCCAATTTCTGAGGACGGCGTGTTGTATAGTCCTGAATAGAAACGAGTCAATGTATTCGATTCACTGATTTCTTCTCTTTATGATCTCCTCGTTCTTTTCATGTTTTTGTACCAGAAGGGACCCTGATCAGAACCGGGAAGAGAATACTGTTAAAGGGGATTCTAACCAACTGGTTTTTTTGTTTTTTTCTTGTATTAGGATGTTCCCAAAATTATCTATTCTCATAAAATTGCTTCGAAAAAATTCGGAAAAACACGAAATCCCTAAAAATGCCATCAATTCTCGTTTAAGTTGCCCACACAATGGCCTAGCACTAGGATTCCCGCGACCCTCTTGGACGAAAACTGGAGGCTCTTGCACACAGTTTTCAGAGATTTCCAAAATTTTCTGAACTTATAACCTTGTTTACCATAACCTTGTTTACAATAAAATACTTCTCTAAGTCTTAAACTGAAACATTATCATAACTCTTATTACATTCCAACACCTCCTCATCATCTAAACATCATCTAATTACAT</canonical>
            <polymorphic>TTCCTGTCTTTAGGGTTGATTTTCTGATCTTACACTTACATTCCAGAACCATGAATCAAGTAGACAACTTTTTAATGTCCCTTGTAAACCCAAATCGGATGACCACACACACTGACTCAAATACCGTTACGAAATGTTTCACTTCCGAACACATTCCGGTTATACTGCGGCTTTTCTCTTTGAACTGTATCTTTATCATAAATTAGCATTGCCCTTCACCCGATTCTTCGGCTCTTCTAAAAAGACGAAGAGAGAGTACTTCATCAAGAGAGAATCAGAGAATTCAACTCGTTTATCTTCCTGTCGCCGAACAACGCGCAAAGTCACCATCCACGAAATGTTTCACCAATTTGCACTTTCTCTGACCACACCATTGAACCATAGAAACTCCTGTTTACGGTGTTTTTTTTCAACTTCGGGAAAGGGCGTGGGAAAAACACGGTACATCAAAAAGAGCGAGGTGAGTTGAGGCGAAACGATTCCAATTTCTGAGGACGGCKTGTTGTATAGTCCTGAATAGAAACGAGTCAATGTATTCGATTCACTGATTTCTTCTCTTTATGATCTCCTCGTTCTTTTCATGTTTTTGTACCAGAAGGGACCCTGATCAGAACCGGGAAGAGAATACTGTTAAAGGGGATTCTAACCAACTGGTTTTTTTGTTTTTTTCTTGTATTAGGATGTTCCCAAAATTATCTATTCTCATAAAATTGCTTCGAAAAAATTCGGAAAAACACGAAATCCCTAAAAATGCCATCAATTCTCGTTTAAGTTGCCCACACAATGGCCTAGCACTAGGATTCCCGCGACCCTCTTGGACGAAAACTGGAGGCTCTTGCACACAGTTTTCAGAGATTTCCAAAATTTTCTGAACTTATAACCTTGTTTACCATAACCTTGTTTACAATAAAATACTTCTCTAAGTCTTAAACTGAAACATTATCATAACTCTTATTACATTCCAACACCTCCTCATCATCTAAACATCATCTAATTACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>192 125 108 71 67 46 43 42 39 34 33 32 30 28 24 13 13 12 10 10 9 7 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>192 125 108 81 71 67 46 43 34 33 32 30 28 24 13 13 12 10 10 9 7 2 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAATTTGCACTTTCTCTG</pcr_primer_p1>
		<pcr_primer_p2>TGGTACAAAAACATGAAAAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCAATTTGCACTTTCTCTGACCACACCATTGAACCATAGAAACTCCTGTTTACGGTGTTTTTTTTCAACTTCGGGAAAGGGCGTGGGAAAAACACGGTACATCAAAAAGAGCGAGGTGAGTTGAGGCGAAACGATTCCAATTTCTGAGGACGGCGTGTTGTATAGTCCTGAATAGAAACGAGTCAATGTATTCGATTCACTGATTTCTTCTCTTTATGATCTCCTCGTTCTTTTCATGTTTTTGTACCA</canonical_amplicon>
		<polymorphic_amplicon>ACCAATTTGCACTTTCTCTGACCACACCATTGAACCATAGAAACTCCTGTTTACGGTGTTTTTTTTCAACTTCGGGAAAGGGCGTGGGAAAAACACGGTACATCAAAAAGAGCGAGGTGAGTTGAGGCGAAACGATTCCAATTTCTGAGGACGGCKTGTTGTATAGTCCTGAATAGAAACGAGTCAATGTATTCGATTCACTGATTTCTTCTCTTTATGATCTCCTCGTTCTTTTCATGTTTTTGTACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3621</snp_id>
        <super_contig>c001701441.Contig1</super_contig>
        <contig_pos>78926</contig_pos>
        <strand>+</strand>
        <context>TCTGGATTAT[A/T]TGAATATCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCGATCGAAATCCGAGAACCCAAGAAGTGAGTTTTTCTTCTGGATTAT</left_flank>
        <right_flank>TGAATATCAATTTTTCTTTTCCCACGCCCTCAATGTTTTCAGGAATGCAA</right_flank>
        <qual_score>149</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAAGATATCAAAATTTTGTCAGCTGAAAAAAATATTGGTGATAATATGATGAATAATTTATCAGTTGGCAAATTTATGATCTCTTACAGAAATCGAGACAATTGAGCTCAAAGTTGCCGTTTGGATCGGCTTCTGTTAAGGTAAATACGGTATCTTAAATGCCACATTTAGTAACACATGCAAGGCAGTTTTTTTCCTACCAATAAAAACATAACGAGATCAGATCATCTTCACATCTTTTCAGCTTCATAAAATTAGCCGAAAAAAGCGAGTCCTACGGATATCGAATGTATGAAGCACTAAATGAGAACAACGACAAATGTATCCTCTCAATTGGATACAAAGGAATCTATATCTACAGGCGGAGTCGTCATCAGAACCTCATAACCCCATATCTGGCATATCCATGGAGAGTGATAGATAACTTGTACTATCGGGACAAAAAGTTTTCGATCGAAATCCGAGAACCCAAGAAGTGAGTTTTTCTTCTGGATTATTTGAATATCAATTTTTCTTTTCCCACGCCCTCAATGTTTTCAGGAATGCAAGTAGCGAGAACGTATCAGATGATGCGATTCTGATGAATGACAGGCAGCTGTCGGAAGCATTCAACCACCCGACAACACAGTAAGTCTCCTCTTCATCCAATTATCCCCTTTATTTTTTGAATACTCTGTGCATAAACACCTCCATTACTGCACCTTTATGTACTCATTGTGTCAACGCAACAGAAGCGCCGAGTTGCGTCAACTCGAAAAGTTTCTTTTTCAAGACACCGCTGGTAGCAATAGGCCAATAAGCGCTTCTTTAAGATAAACATAATGTTTTGATTACCCAACCAATAGGGACATTCAATGAACTTCGTAACAGGTCACCTGGCAACAAGACCTTCTTTTTCCCATTTGAATTGTGGTACCTAAACGGACACTCGTGTGTGTGTGTGTGTGTGTGTGTGTATCTTTTGTATGTGCCAGTTTAAAAATGATCAAAGCGGCTCA</canonical>
            <polymorphic>GGAAAGATATCAAAATTTTGTCAGCTGAAAAAAATATTGGTGATAATATGATGAATAATTTATCAGTTGGCAAATTTATGATCTCTTACAGAAATCGAGACAATTGAGCTCAAAGTTGCCGTTTGGATCGGCTTCTGTTAAGGTAAATACGGTATCTTAAATGCCACATTTAGTAACACATGCAAGGCAGTTTTTTTCCTACCAATAAAAACATAACGAGATCAGATCATCTTCACATCTTTTCAGCTTCATAAAATTAGCCGAAAAAAGCGAGTCCTACGGATATCGAATGTATGAAGCACTAAATGAGAACAACGACAAATGTATCCTCTCAATTGGATACAAAGGAATCTATATCTACAGGCGGAGTCGTCATCAGAACCTCATAACCCCATATCTGGCATATCCATGGAGAGTGATAGATAACTTGTACTATCGGGACAAAAAGTTTTCGATCGAAATCCGAGAACCCAAGAAGTGAGTTTTTCTTCTGGATTATWTGAATATCAATTTTTCTTTTCCCACGCCCTCAATGTTTTCAGGAATGCAAGTAGCGAGAACGTATCAGATGATGCGATTCTGATGAATGACAGGCAGCTGTCGGAAGCATTCAACCACCCGACAACACAGTAAGTCTCCTCTTCATCCAATTATCCCCTTTATTTTTTGAATACTCTGTGCATAAACACCTCCATTACTGCACCTTTATGTACTCATTGTGTCAACGCAACAGAAGCGCCGAGTTGCGTCAACTCGAAAAGTTTCTTTTTCAAGACACCGCTGGTAGCAATAGGCCAATAAGCGCTTCTTTAAGATAAACATAATGTTTTGATTACCCAACCAATAGGGACATTCAATGAACTTCGTAACAGGTCACCTGGCAACAAGACCTTCTTTTTCCCATTTGAATTGTGGTACCTAAACGGACACTCGTGTGTGTGTGTGTGTGTGTGTGTGTATCTTTTGTATGTGCCAGTTTAAAAATGATCAAAGCGGCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATATCCATGGAGAGTGATAGAT</pcr_primer_p1>
		<pcr_primer_p2>ATTGGATGAAGAGGAGACTTACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATATCCATGGAGAGTGATAGATAACTTGTACTATCGGGACAAAAAGTTTTCGATCGAAATCCGAGAACCCAAGAAGTGAGTTTTTCTTCTGGATTATTTGAATATCAATTTTTCTTTTCCCACGCCCTCAATGTTTTCAGGAATGCAAGTAGCGAGAACGTATCAGATGATGCGATTCTGATGAATGACAGGCAGCTGTCGGAAGCATTCAACCACCCGACAACACAGTAAGTCTCCTCTTCATCCAAT</canonical_amplicon>
		<polymorphic_amplicon>CATATCCATGGAGAGTGATAGATAACTTGTACTATCGGGACAAAAAGTTTTCGATCGAAATCCGAGAACCCAAGAAGTGAGTTTTTCTTCTGGATTATWTGAATATCAATTTTTCTTTTCCCACGCCCTCAATGTTTTCAGGAATGCAAGTAGCGAGAACGTATCAGATGATGCGATTCTGATGAATGACAGGCAGCTGTCGGAAGCATTCAACCACCCGACAACACAGTAAGTCTCCTCTTCATCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3623</snp_id>
        <super_contig>c001701441.Contig1</super_contig>
        <contig_pos>93567</contig_pos>
        <strand>+</strand>
        <context>CGCACATGCC[A/T]GTCTGCGAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGGTTCACAGTTTGGGCACCCAGCGCCGCCCTAATTTTTCGCACATGCC</left_flank>
        <right_flank>GTCTGCGAGGAGGAGGCGACCGACGACCTGGCGAACCGTCCGATCACCCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCTTTTCTATCGGCTCTCTATAGCTATCTTTGTTATTCAATTAGATTCGTAAGCCTTTCTGTTCTTAGCATGTGGACACAATCAAAGTGGTACTTTATATTTTGTACTATTCCTGTCATTTATTCATGTGGAAGTATCCCAAGATTTTTCTATTTTTCATATACTTTTCCCTGCACCTACAACGCTTCACTGTTTCTTTAAGTTTTTCAGTTCCCTGTACTTTGCAAAACTGTTATGTCATGTGATTTGCTTGTTTTGATGTTGTAAAACTCCTCAATGTGTGCATTCGTATTTGTAGTTCTACTCCAATAACTTTGCTTTTTTCGCCCACCAACTTTGCTACCGCCGCAGAGTAAAGTATGTGTTGCACTGCTGTCCCTGACAGCTGCTCAAATGCTCAATGGTTCCACGACATTTCCCCTCTCTCTATCCCTCATCTTATAATAGTGGTTCACAGTTTGGGCACCCAGCGCCGCCCTAATTTTTCGCACATGCCTGTCTGCGAGGAGGAGGCGACCGACGACCTGGCGAACCGTCCGATCACCCCATTCCAAGCCGAAGTGGGCGTATCACATTGACATTCCATGACAATCGTTTCAAACTTTTACGATCATATGTGTTGCTGCTCATCATTACTTCCTCTCAAATTACTCTCCCCGCTGCTTGTTGTCTACCACATTTTGGCCTTTCATTTACTGAACAAATATTAGAGTTCGCCAACGCGATTTATCATTCGACCGATTTATCAGTTTACTCTCCTTGCGGTCTCTTTTGGGATACACGCCAGCACCTTGTAAATAGTTGTACAGCAAGAACGGAACTCCTCCTGGGGCATACACCATTAATTCAGTATAACCAAAATAGGAAAAGTCTGCCTAGTTTCCGATTCCGACCTCAATCCTTTTTTGCTGGGCGCCGGAGACAACATGACGAATTGAGAGGGAGAGCGACGCGACGCTCGCAATACTTTTCCGCCGATGAATGACTCATCCCATCT</canonical>
            <polymorphic>TCTTCTTTTCTATCGGCTCTCTATAGCTATCTTTGTTATTCAATTAGATTCGTAAGCCTTTCTGTTCTTAGCATGTGGACACAATCAAAGTGGTACTTTATATTTTGTACTATTCCTGTCATTTATTCATGTGGAAGTATCCCAAGATTTTTCTATTTTTCATATACTTTTCCCTGCACCTACAACGCTTCACTGTTTCTTTAAGTTTTTCAGTTCCCTGTACTTTGCAAAACTGTTATGTCATGTGATTTGCTTGTTTTGATGTTGTAAAACTCCTCAATGTGTGCATTCGTATTTGTAGTTCTACTCCAATAACTTTGCTTTTTTCGCCCACCAACTTTGCTACCGCCGCAGAGTAAAGTATGTGTTGCACTGCTGTCCCTGACAGCTGCTCAAATGCTCAATGGTTCCACGACATTTCCCCTCTCTCTATCCCTCATCTTATAATAGTGGTTCACAGTTTGGGCACCCAGCGCCGCCCTAATTTTTCGCACATGCCWGTCTGCGAGGAGGAGGCGACCGACGACCTGGCGAACCGTCCGATCACCCCATTCCAAGCCGAAGTGGGCGTATCACATTGACATTCCATGACAATCGTTTCAAACTTTTACGATCATATGTGTTGCTGCTCATCATTACTTCCTCTCAAATTACTCTCCCCGCTGCTTGTTGTCTACCACATTTTGGCCTTTCATTTACTGAACAAATATTAGAGTTCGCCAACGCGATTTATCATTCGACCGATTTATCAGTTTACTCTCCTTGCGGTCTCTTTTGGGATACACGCCAGCACCTTGTAAATAGTTGTACAGCAAGAACGGAACTCCTCCTGGGGCATACACCATTAATTCAGTATAACCAAAATAGGAAAAGTCTGCCTAGTTTCCGATTCCGACCTCAATCCTTTTTTGCTGGGCGCCGGAGACAACATGACGAATTGAGAGGGAGAGCGACGCGACGCTCGCAATACTTTTCCGCCGATGAATGACTCATCCCATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATGTGTTGCACTGCTGTC</pcr_primer_p1>
		<pcr_primer_p2>TAAAAGTTTGAAACGATTGTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTATGTGTTGCACTGCTGTCCCTGACAGCTGCTCAAATGCTCAATGGTTCCACGACATTTCCCCTCTCTCTATCCCTCATCTTATAATAGTGGTTCACAGTTTGGGCACCCAGCGCCGCCCTAATTTTTCGCACATGCCTGTCTGCGAGGAGGAGGCGACCGACGACCTGGCGAACCGTCCGATCACCCCATTCCAAGCCGAAGTGGGCGTATCACATTGACATTCCATGACAATCGTTTCAAACTTTTA</canonical_amplicon>
		<polymorphic_amplicon>GTATGTGTTGCACTGCTGTCCCTGACAGCTGCTCAAATGCTCAATGGTTCCACGACATTTCCCCTCTCTCTATCCCTCATCTTATAATAGTGGTTCACAGTTTGGGCACCCAGCGCCGCCCTAATTTTTCGCACATGCCWGTCTGCGAGGAGGAGGCGACCGACGACCTGGCGAACCGTCCGATCACCCCATTCCAAGCCGAAGTGGGCGTATCACATTGACATTCCATGACAATCGTTTCAAACTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3624</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>86495</contig_pos>
        <strand>+</strand>
        <context>TCCCATAGAT[C/T]CTTCTCTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTAATTGAAATTAAATTACGTTGAAATTACCCAGAATTTTCCCATAGAT</left_flank>
        <right_flank>CTTCTCTTTTTATTTCCCCTCAAAAATCCCTTCAATTTTTCATTTTCACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGACTTTTTCCAGAATTTTCAGAGCACGGCCCGTCTCGGCCCGGATTTTCAGAACAAATGTTTTCTGCCTTTCAAAAAATTTTTTGGAGTCAACAGAAAAAATGGACGATTTTTCTGACAAGAAAAAAATTTTCAAGAAAGGGTGTCCATAAAAAATAGTTCTTTCACAAAAAAATTTGAAAAAATATTTGAATTTTCAAATTTTTTGTTCAAATTTGGAGAATCCGGGCCCGCTGGGCCAGGTATGGCCGAGGAGTCACGAGCCAGGCCCTGATTTTGCAAGTATGAAAAAAATCAACTTTCACAGATTTCCTTGGAATTCTGTATTTTTTAAAGGTTTTTTTTTGTTTACAAGCCACTTCCAATTTGACTCTTTAAACGGCGAAAATGTTTACAAAATACTTTAAAAAACCCAGAAATCGCAATGAAATGTCTGAAAATCCATGAAATTAATTGAAATTAAATTACGTTGAAATTACCCAGAATTTTCCCATAGATTCTTCTCTTTTTATTTCCCCTCAAAAATCCCTTCAATTTTTCATTTTCACAGCTCCCCACTCTTCGATCCCTTTTCCTCCGTCTCTTCTCCTCCGCTAAGCCCCGCCCACTCTACACACAAAACATAGCGGGCGGCGGAACCCGGGAAGAGTCGGTACATGGGCGCATACGTATAGCGCGCTCTGGTCACTCTAATCAACTCTGGTTCCTCTGCATTTGACCGTGAAAATCTTTCGCCTTTTACTAAAGATTTCCGTGCAAAGGAGCAAACTTTGAGTATTATTACCAATTTTTGGAGTCCCCTCGAAAGAGCGGGACAAAAGTAAAGTCACAAAAGTACTCAGAAACATCTGAAATCGCTGCTTTGTGATGTGAAAATCTTGGGATCGCCGGCTGAAATAAGAACCTTGAAGACGTTTTCGGACTCAATCCTTGTGTTAATTCGAGAATAGAAAACATCTGAATGCATGAAAGTTTATTTATTAAAACGGCAGTAAAGCT</canonical>
            <polymorphic>CCGACTTTTTCCAGAATTTTCAGAGCACGGCCCGTCTCGGCCCGGATTTTCAGAACAAATGTTTTCTGCCTTTCAAAAAATTTTTTGGAGTCAACAGAAAAAATGGACGATTTTTCTGACAAGAAAAAAATTTTCAAGAAAGGGTGTCCATAAAAAATAGTTCTTTCACAAAAAAATTTGAAAAAATATTTGAATTTTCAAATTTTTTGTTCAAATTTGGAGAATCCGGGCCCGCTGGGCCAGGTATGGCCGAGGAGTCACGAGCCAGGCCCTGATTTTGCAAGTATGAAAAAAATCAACTTTCACAGATTTCCTTGGAATTCTGTATTTTTTAAAGGTTTTTTTTTGTTTACAAGCCACTTCCAATTTGACTCTTTAAACGGCGAAAATGTTTACAAAATACTTTAAAAAACCCAGAAATCGCAATGAAATGTCTGAAAATCCATGAAATTAATTGAAATTAAATTACGTTGAAATTACCCAGAATTTTCCCATAGATYCTTCTCTTTTTATTTCCCCTCAAAAATCCCTTCAATTTTTCATTTTCACAGCTCCCCACTCTTCGATCCCTTTTCCTCCGTCTCTTCTCCTCCGCTAAGCCCCGCCCACTCTACACACAAAACATAGCGGGCGGCGGAACCCGGGAAGAGTCGGTACATGGGCGCATACGTATAGCGCGCTCTGGTCACTCTAATCAACTCTGGTTCCTCTGCATTTGACCGTGAAAATCTTTCGCCTTTTACTAAAGATTTCCGTGCAAAGGAGCAAACTTTGAGTATTATTACCAATTTTTGGAGTCCCCTCGAAAGAGCGGGACAAAAGTAAAGTCACAAAAGTACTCAGAAACATCTGAAATCGCTGCTTTGTGATGTGAAAATCTTGGGATCGCCGGCTGAAATAAGAACCTTGAAGACGTTTTCGGACTCAATCCTTGTGTTAATTCGAGAATAGAAAACATCTGAATGCATGAAAGTTTATTTATTAAAACGGCAGTAAAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>151 147 134 127 127 115 88 78 33</canonical_bands>
                <polymorphic_bands>278 147 134 127 115 88 78 33</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 275 222</canonical_bands>
                <polymorphic_bands>778 222</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTTTACAAGCCACTTC</pcr_primer_p1>
		<pcr_primer_p2>GAGAAGAGACGGAGGAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTTTACAAGCCACTTCCAATTTGACTCTTTAAACGGCGAAAATGTTTACAAAATACTTTAAAAAACCCAGAAATCGCAATGAAATGTCTGAAAATCCATGAAATTAATTGAAATTAAATTACGTTGAAATTACCCAGAATTTTCCCATAGATTCTTCTCTTTTTATTTCCCCTCAAAAATCCCTTCAATTTTTCATTTTCACAGCTCCCCACTCTTCGATCCCTTTTCCTCCGTCTCTTCTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTTTACAAGCCACTTCCAATTTGACTCTTTAAACGGCGAAAATGTTTACAAAATACTTTAAAAAACCCAGAAATCGCAATGAAATGTCTGAAAATCCATGAAATTAATTGAAATTAAATTACGTTGAAATTACCCAGAATTTTCCCATAGATYCTTCTCTTTTTATTTCCCCTCAAAAATCCCTTCAATTTTTCATTTTCACAGCTCCCCACTCTTCGATCCCTTTTCCTCCGTCTCTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3625</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>86824</contig_pos>
        <strand>+</strand>
        <context>AAARTAAAGT[C/G]ACAAAWGTAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTATTACCAATTTTTGGAGTCCCCTCGAAAGAGCGGGACAAAAGTAAAGT</left_flank>
        <right_flank>ACAAAAGTACTCAGAAACATCTGAAATCGCTGCTTTGTGATGTGAAAATC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTAAAGGTTTTTTTTTGTTTACAAGCCACTTCCAATTTGACTCTTTAAACGGCGAAAATGTTTACAAAATACTTTAAAAAACCCAGAAATCGCAATGAAATGTCTGAAAATCCATGAAATTAATTGAAATTAAATTACGTTGAAATTACCCAGAATTTTCCCATAGATTCTTCTCTTTTTATTTCCCCTCAAAAATCCCTTCAATTTTTCATTTTCACAGCTCCCCACTCTTCGATCCCTTTTCCTCCGTCTCTTCTCCTCCGCTAAGCCCCGCCCACTCTACACACAAAACATAGCGGGCGGCGGAACCCGGGAAGAGTCGGTACATGGGCGCATACGTATAGCGCGCTCTGGTCACTCTAATCAACTCTGGTTCCTCTGCATTTGACCGTGAAAATCTTTCGCCTTTTACTAAAGATTTCCGTGCAAAGGAGCAAACTTTGAGTATTATTACCAATTTTTGGAGTCCCCTCGAAAGAGCGGGACAAAAGTAAAGTCACAAAAGTACTCAGAAACATCTGAAATCGCTGCTTTGTGATGTGAAAATCTTGGGATCGCCGGCTGAAATAAGAACCTTGAAGACGTTTTCGGACTCAATCCTTGTGTTAATTCGAGAATAGAAAACATCTGAATGCATGAAAGTTTATTTATTAAAACGGCAGTAAAGCTTCAAAAAAGACAAAAGATCATTACAATTATTTACTACAAGCTTTCATAGGAGTTCCAGTGATGAAAAGAATTACTTCTTGTTTCCAGTGATGTGAAGGATGCCAGATCCGTCCAACTTGCTCTTGATGGTCGATGGATCGGTTCCCTTTGGAAGTCTGTAGCATCTGGTGATACTGCGAGTGATGGTTCCGAACTTGTCGTCCTTGGCAGTGTGGGCCATATGGATCTCAAGGAACTCTCCAACGTTCTTCACATCGATCTCATTTGGCTCGAAGTTGAAGGCCTCGAGTCCGACTTCGAAGTGGTCTTCGTATTCGAGAACCTGAAAC</canonical>
            <polymorphic>TTTTAAAGGTTTTTTTTTGTTTACAAGCCACTTCCAATTTGACTCTTTAAACGGCGAAAATGTTTACAAAATACTTTAAAAAACCCAGAAATCGCAATGAAATGTCTGAAAATCCATGAAATTAATTGAAATTAAATTACGTTGAAATTACCCAGAATTTTCCCATAGATTCTTCTCTTTTTATTTCCCCTCAAAAATCCCTTCAATTTTTCATTTTCACAGCTCCCCACTCTTCGATCCCTTTTCCTCCGTCTCTTCTCCTCCGCTAAGCCCCGCCCACTCTACACACAAAACATAGCGGGCGGCGGAACCCGGGAAGAGTCGGTACATGGGCGCATACGTATAGCGCGCTCTGGTCACTCTAATCAACTCTGGTTCCTCTGCATTTGACCGTGAAAATCTTTCGCCTTTTACTAAAGATTTCCGTGCAAAGGAGCAAACTTTGAGTATTATTACCAATTTTTGGAGTCCCCTCGAAAGAGCGGGACAAAAGTAAAGTSACAAAAGTACTCAGAAACATCTGAAATCGCTGCTTTGTGATGTGAAAATCTTGGGATCGCCGGCTGAAATAAGAACCTTGAAGACGTTTTCGGACTCAATCCTTGTGTTAATTCGAGAATAGAAAACATCTGAATGCATGAAAGTTTATTTATTAAAACGGCAGTAAAGCTTCAAAAAAGACAAAAGATCATTACAATTATTTACTACAAGCTTTCATAGGAGTTCCAGTGATGAAAAGAATTACTTCTTGTTTCCAGTGATGTGAAGGATGCCAGATCCGTCCAACTTGCTCTTGATGGTCGATGGATCGGTTCCCTTTGGAAGTCTGTAGCATCTGGTGATACTGCGAGTGATGGTTCCGAACTTGTCGTCCTTGGCAGTGTGGGCCATATGGATCTCAAGGAACTCTCCAACGTTCTTCACATCGATCTCATTTGGCTCGAAGTTGAAGGCCTCGAGTCCGACTTCGAAGTGGTCTTCGTATTCGAGAACCTGAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>189 124 76 73 71 63 52 50 38 38 36 33 30 30 29 25 12 10 7 5 5 2 2</canonical_bands>
                <polymorphic_bands>189 124 111 76 71 63 52 50 38 36 33 30 30 29 25 12 10 7 5 5 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>503 355 142</canonical_bands>
                <polymorphic_bands>645 355</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTCGCCTTTTACTAAAGATT</pcr_primer_p1>
		<pcr_primer_p2>ATAAACTTTCATGCATTCAGATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTTCGCCTTTTACTAAAGATTTCCGTGCAAAGGAGCAAACTTTGAGTATTATTACCAATTTTTGGAGTCCCCTCGAAAGAGCGGGACAAAAGTAAAGTCACAAAAGTACTCAGAAACATCTGAAATCGCTGCTTTGTGATGTGAAAATCTTGGGATCGCCGGCTGAAATAAGAACCTTGAAGACGTTTTCGGACTCAATCCTTGTGTTAATTCGAGAATAGAAAACATCTGAATGCATGAAAGTTTAT</canonical_amplicon>
		<polymorphic_amplicon>TCTTTCGCCTTTTACTAAAGATTTCCGTGCAAAGGAGCAAACTTTGAGTATTATTACCAATTTTTGGAGTCCCCTCGAAAGAGCGGGACAAAAGTAAAGTSACAAAAGTACTCAGAAACATCTGAAATCGCTGCTTTGTGATGTGAAAATCTTGGGATCGCCGGCTGAAATAAGAACCTTGAAGACGTTTTCGGACTCAATCCTTGTGTTAATTCGAGAATAGAAAACATCTGAATGCATGAAAGTTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3627</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>86861</contig_pos>
        <strand>+</strand>
        <context>TCGCTGCTTT[G/T]TGATGTGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACAAAAGTAAAGTCACAAAAGTACTCAGAAACATCTGAAATCGCTGCTTT</left_flank>
        <right_flank>TGATGTGAAAATCTTGGGATCGCCGGCTGAAATAAGAACCTTGAAGACGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGACTCTTTAAACGGCGAAAATGTTTACAAAATACTTTAAAAAACCCAGAAATCGCAATGAAATGTCTGAAAATCCATGAAATTAATTGAAATTAAATTACGTTGAAATTACCCAGAATTTTCCCATAGATTCTTCTCTTTTTATTTCCCCTCAAAAATCCCTTCAATTTTTCATTTTCACAGCTCCCCACTCTTCGATCCCTTTTCCTCCGTCTCTTCTCCTCCGCTAAGCCCCGCCCACTCTACACACAAAACATAGCGGGCGGCGGAACCCGGGAAGAGTCGGTACATGGGCGCATACGTATAGCGCGCTCTGGTCACTCTAATCAACTCTGGTTCCTCTGCATTTGACCGTGAAAATCTTTCGCCTTTTACTAAAGATTTCCGTGCAAAGGAGCAAACTTTGAGTATTATTACCAATTTTTGGAGTCCCCTCGAAAGAGCGGGACAAAAGTAAAGTCACAAAAGTACTCAGAAACATCTGAAATCGCTGCTTTGTGATGTGAAAATCTTGGGATCGCCGGCTGAAATAAGAACCTTGAAGACGTTTTCGGACTCAATCCTTGTGTTAATTCGAGAATAGAAAACATCTGAATGCATGAAAGTTTATTTATTAAAACGGCAGTAAAGCTTCAAAAAAGACAAAAGATCATTACAATTATTTACTACAAGCTTTCATAGGAGTTCCAGTGATGAAAAGAATTACTTCTTGTTTCCAGTGATGTGAAGGATGCCAGATCCGTCCAACTTGCTCTTGATGGTCGATGGATCGGTTCCCTTTGGAAGTCTGTAGCATCTGGTGATACTGCGAGTGATGGTTCCGAACTTGTCGTCCTTGGCAGTGTGGGCCATATGGATCTCAAGGAACTCTCCAACGTTCTTCACATCGATCTCATTTGGCTCGAAGTTGAAGGCCTCGAGTCCGACTTCGAAGTGGTCTTCGTATTCGAGAACCTGAAACTTATTGATAAGAGTGATTGTCAGGTCTTGAATGCTAA</canonical>
            <polymorphic>TTTGACTCTTTAAACGGCGAAAATGTTTACAAAATACTTTAAAAAACCCAGAAATCGCAATGAAATGTCTGAAAATCCATGAAATTAATTGAAATTAAATTACGTTGAAATTACCCAGAATTTTCCCATAGATTCTTCTCTTTTTATTTCCCCTCAAAAATCCCTTCAATTTTTCATTTTCACAGCTCCCCACTCTTCGATCCCTTTTCCTCCGTCTCTTCTCCTCCGCTAAGCCCCGCCCACTCTACACACAAAACATAGCGGGCGGCGGAACCCGGGAAGAGTCGGTACATGGGCGCATACGTATAGCGCGCTCTGGTCACTCTAATCAACTCTGGTTCCTCTGCATTTGACCGTGAAAATCTTTCGCCTTTTACTAAAGATTTCCGTGCAAAGGAGCAAACTTTGAGTATTATTACCAATTTTTGGAGTCCCCTCGAAAGAGCGGGACAAAAGTAAAGTCACAAAAGTACTCAGAAACATCTGAAATCGCTGCTTTKTGATGTGAAAATCTTGGGATCGCCGGCTGAAATAAGAACCTTGAAGACGTTTTCGGACTCAATCCTTGTGTTAATTCGAGAATAGAAAACATCTGAATGCATGAAAGTTTATTTATTAAAACGGCAGTAAAGCTTCAAAAAAGACAAAAGATCATTACAATTATTTACTACAAGCTTTCATAGGAGTTCCAGTGATGAAAAGAATTACTTCTTGTTTCCAGTGATGTGAAGGATGCCAGATCCGTCCAACTTGCTCTTGATGGTCGATGGATCGGTTCCCTTTGGAAGTCTGTAGCATCTGGTGATACTGCGAGTGATGGTTCCGAACTTGTCGTCCTTGGCAGTGTGGGCCATATGGATCTCAAGGAACTCTCCAACGTTCTTCACATCGATCTCATTTGGCTCGAAGTTGAAGGCCTCGAGTCCGACTTCGAAGTGGTCTTCGTATTCGAGAACCTGAAACTTATTGATAAGAGTGATTGTCAGGTCTTGAATGCTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>182 124 76 73 71 63 52 50 40 38 38 36 33 30 29 22 12 10 7 5 5 2 2</canonical_bands>
                <polymorphic_bands>182 124 76 73 71 63 52 50 43 40 38 36 33 30 29 22 12 10 7 5 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTCGCCTTTTACTAAAGATT</pcr_primer_p1>
		<pcr_primer_p2>ATAAACTTTCATGCATTCAGATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTTCGCCTTTTACTAAAGATTTCCGTGCAAAGGAGCAAACTTTGAGTATTATTACCAATTTTTGGAGTCCCCTCGAAAGAGCGGGACAAAAGTAAAGTCACAAAAGTACTCAGAAACATCTGAAATCGCTGCTTTGTGATGTGAAAATCTTGGGATCGCCGGCTGAAATAAGAACCTTGAAGACGTTTTCGGACTCAATCCTTGTGTTAATTCGAGAATAGAAAACATCTGAATGCATGAAAGTTTAT</canonical_amplicon>
		<polymorphic_amplicon>TCTTTCGCCTTTTACTAAAGATTTCCGTGCAAAGGAGCAAACTTTGAGTATTATTACCAATTTTTGGAGTCCCCTCGAAAGAGCGGGACAAAAGTAAAGTCACAAAAGTACTCAGAAACATCTGAAATCGCTGCTTTKTGATGTGAAAATCTTGGGATCGCCGGCTGAAATAAGAACCTTGAAGACGTTTTCGGACTCAATCCTTGTGTTAATTCGAGAATAGAAAACATCTGAATGCATGAAAGTTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3628</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>86928</contig_pos>
        <strand>+</strand>
        <context>ACTCAATCCT[A/T]GTGTTAATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGATCGCCGGCTGAAATAAGAACCTTGAAGACGTTTTCGGACTCAATCCT</left_flank>
        <right_flank>GTGTTAATTCGAGAATAGAAAACATCTGAATGCATGAAAGTTTATTTATT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGAAAATCCATGAAATTAATTGAAATTAAATTACGTTGAAATTACCCAGAATTTTCCCATAGATTCTTCTCTTTTTATTTCCCCTCAAAAATCCCTTCAATTTTTCATTTTCACAGCTCCCCACTCTTCGATCCCTTTTCCTCCGTCTCTTCTCCTCCGCTAAGCCCCGCCCACTCTACACACAAAACATAGCGGGCGGCGGAACCCGGGAAGAGTCGGTACATGGGCGCATACGTATAGCGCGCTCTGGTCACTCTAATCAACTCTGGTTCCTCTGCATTTGACCGTGAAAATCTTTCGCCTTTTACTAAAGATTTCCGTGCAAAGGAGCAAACTTTGAGTATTATTACCAATTTTTGGAGTCCCCTCGAAAGAGCGGGACAAAAGTAAAGTCACAAAAGTACTCAGAAACATCTGAAATCGCTGCTTTGTGATGTGAAAATCTTGGGATCGCCGGCTGAAATAAGAACCTTGAAGACGTTTTCGGACTCAATCCTTGTGTTAATTCGAGAATAGAAAACATCTGAATGCATGAAAGTTTATTTATTAAAACGGCAGTAAAGCTTCAAAAAAGACAAAAGATCATTACAATTATTTACTACAAGCTTTCATAGGAGTTCCAGTGATGAAAAGAATTACTTCTTGTTTCCAGTGATGTGAAGGATGCCAGATCCGTCCAACTTGCTCTTGATGGTCGATGGATCGGTTCCCTTTGGAAGTCTGTAGCATCTGGTGATACTGCGAGTGATGGTTCCGAACTTGTCGTCCTTGGCAGTGTGGGCCATATGGATCTCAAGGAACTCTCCAACGTTCTTCACATCGATCTCATTTGGCTCGAAGTTGAAGGCCTCGAGTCCGACTTCGAAGTGGTCTTCGTATTCGAGAACCTGAAACTTATTGATAAGAGTGATTGTCAGGTCTTGAATGCTAAAAAGACTTAAAAACTTAAAATACAAAAAGTATACAAACCTTAACAACTCCATCTCCCTTCTGGAATG</canonical>
            <polymorphic>TCTGAAAATCCATGAAATTAATTGAAATTAAATTACGTTGAAATTACCCAGAATTTTCCCATAGATTCTTCTCTTTTTATTTCCCCTCAAAAATCCCTTCAATTTTTCATTTTCACAGCTCCCCACTCTTCGATCCCTTTTCCTCCGTCTCTTCTCCTCCGCTAAGCCCCGCCCACTCTACACACAAAACATAGCGGGCGGCGGAACCCGGGAAGAGTCGGTACATGGGCGCATACGTATAGCGCGCTCTGGTCACTCTAATCAACTCTGGTTCCTCTGCATTTGACCGTGAAAATCTTTCGCCTTTTACTAAAGATTTCCGTGCAAAGGAGCAAACTTTGAGTATTATTACCAATTTTTGGAGTCCCCTCGAAAGAGCGGGACAAAAGTAAAGTCACAAAAGTACTCAGAAACATCTGAAATCGCTGCTTTGTGATGTGAAAATCTTGGGATCGCCGGCTGAAATAAGAACCTTGAAGACGTTTTCGGACTCAATCCTWGTGTTAATTCGAGAATAGAAAACATCTGAATGCATGAAAGTTTATTTATTAAAACGGCAGTAAAGCTTCAAAAAAGACAAAAGATCATTACAATTATTTACTACAAGCTTTCATAGGAGTTCCAGTGATGAAAAGAATTACTTCTTGTTTCCAGTGATGTGAAGGATGCCAGATCCGTCCAACTTGCTCTTGATGGTCGATGGATCGGTTCCCTTTGGAAGTCTGTAGCATCTGGTGATACTGCGAGTGATGGTTCCGAACTTGTCGTCCTTGGCAGTGTGGGCCATATGGATCTCAAGGAACTCTCCAACGTTCTTCACATCGATCTCATTTGGCTCGAAGTTGAAGGCCTCGAGTCCGACTTCGAAGTGGTCTTCGTATTCGAGAACCTGAAACTTATTGATAAGAGTGATTGTCAGGTCTTGAATGCTAAAAAGACTTAAAAACTTAAAATACAAAAAGTATACAAACCTTAACAACTCCATCTCCCTTCTGGAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAGGAGCAAACTTTGAGTAT</pcr_primer_p1>
		<pcr_primer_p2>AAGCTTTACTGCCGTTTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAAAGGAGCAAACTTTGAGTATTATTACCAATTTTTGGAGTCCCCTCGAAAGAGCGGGACAAAAGTAAAGTCACAAAAGTACTCAGAAACATCTGAAATCGCTGCTTTGTGATGTGAAAATCTTGGGATCGCCGGCTGAAATAAGAACCTTGAAGACGTTTTCGGACTCAATCCTTGTGTTAATTCGAGAATAGAAAACATCTGAATGCATGAAAGTTTATTTATTAAAACGGCAGTAAAGCTT</canonical_amplicon>
		<polymorphic_amplicon>CAAAGGAGCAAACTTTGAGTATTATTACCAATTTTTGGAGTCCCCTCGAAAGAGCGGGACAAAAGTAAAGTCACAAAAGTACTCAGAAACATCTGAAATCGCTGCTTTGTGATGTGAAAATCTTGGGATCGCCGGCTGAAATAAGAACCTTGAAGACGTTTTCGGACTCAATCCTWGTGTTAATTCGAGAATAGAAAACATCTGAATGCATGAAAGTTTATTTATTAAAACGGCAGTAAAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3629</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>89076</contig_pos>
        <strand>+</strand>
        <context>ACTTTTTTAT[C/T]TGTTTCATCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCTTGGATATGAAATTAGAATTAATTTGGCAGTAAATCACTTTTTTAT</left_flank>
        <right_flank>TGTTTCATCTGGGCTAATTATGAAAACGGTTCTGGTCACCGACTAATCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTGTAGTCATAGGGTGTCAATATTTGACACTGTTCGCACTTTTCAATGATTCCATAAAATTGTAAAATGAATGATTTTAGCAGATTTTAAAAGATAAATGCTACATCAGAATTAGAAGATCCTCACTTTTTGATTTTCCTACAGCGGTTTTTTGACTGAAAAATAATTTGCAACTTTACTTTAGTACAACTTTTGGCTGTTTCATCTGGGCTGAATGTAAAAAAAGGCTGAAGGCCACCTACTGAAGAAGGAGTTTTCCGTATTTATTTTCTCGATTTTTGTACGTTTTCAGTCAATTTTTTCGCCATCAAAATTTTACGTTATCCGACTTTTTTGCAATGATATCGTCTTTGTAGGAATTCTGGTGTCATTCTCTTAGTTAGGTGGAATTCAATCATAAATAGGAGGTAAGAATTCCAAAAATCCATCTGTCTTTTTTTTGTTGAAAATCTTGGATATGAAATTAGAATTAATTTGGCAGTAAATCACTTTTTTATCTGTTTCATCTGGGCTAATTATGAAAACGGTTCTGGTCACCGACTAATCAAACCTTCTTTTCATGGAATTTCAAATACATGGCATTTTAAAATTATTTTTTGAATGTGCAGTATCAGTTATGTGGTTGATGTAACAGAAAAACTTTTGAAACTCGGAAACGATTATATCGTAATTTGATGATTTCATGAGTTCTGGTTTCACTCTCCTCATAGAAATTTAGCTGGAAAAAATACGTATGCATTTCAAAAGACAATATTCTTATTTTCAATATACAGTACTGGTCAATAAGATTTACAAAAAAAAACAGTTTTTTCAGTTGATTTTCGTTCATTTTGACCATTTTCGCGAGTCTGGAGTTCGCCTGTCAAGTTCCCGATCTCTTTGAAAAACTTTGAGGGTGTAAGACAGATCTAGAAACCTTCGTATTCACAGAATTTTTAGAAAATTCCAGTTTTTGAGCTATTAGCCAATTCCTGAAGAATACCTCTTTTATTCATTTT</canonical>
            <polymorphic>TACTGTAGTCATAGGGTGTCAATATTTGACACTGTTCGCACTTTTCAATGATTCCATAAAATTGTAAAATGAATGATTTTAGCAGATTTTAAAAGATAAATGCTACATCAGAATTAGAAGATCCTCACTTTTTGATTTTCCTACAGCGGTTTTTTGACTGAAAAATAATTTGCAACTTTACTTTAGTACAACTTTTGGCTGTTTCATCTGGGCTGAATGTAAAAAAAGGCTGAAGGCCACCTACTGAAGAAGGAGTTTTCCGTATTTATTTTCTCGATTTTTGTACGTTTTCAGTCAATTTTTTCGCCATCAAAATTTTACGTTATCCGACTTTTTTGCAATGATATCGTCTTTGTAGGAATTCTGGTGTCATTCTCTTAGTTAGGTGGAATTCAATCATAAATAGGAGGTAAGAATTCCAAAAATCCATCTGTCTTTTTTTTGTTGAAAATCTTGGATATGAAATTAGAATTAATTTGGCAGTAAATCACTTTTTTATYTGTTTCATCTGGGCTAATTATGAAAACGGTTCTGGTCACCGACTAATCAAACCTTCTTTTCATGGAATTTCAAATACATGGCATTTTAAAATTATTTTTTGAATGTGCAGTATCAGTTATGTGGTTGATGTAACAGAAAAACTTTTGAAACTCGGAAACGATTATATCGTAATTTGATGATTTCATGAGTTCTGGTTTCACTCTCCTCATAGAAATTTAGCTGGAAAAAATACGTATGCATTTCAAAAGACAATATTCTTATTTTCAATATACAGTACTGGTCAATAAGATTTACAAAAAAAAACAGTTTTTTCAGTTGATTTTCGTTCATTTTGACCATTTTCGCGAGTCTGGAGTTCGCCTGTCAAGTTCCCGATCTCTTTGAAAAACTTTGAGGGTGTAAGACAGATCTAGAAACCTTCGTATTCACAGAATTTTTAGAAAATTCCAGTTTTTGAGCTATTAGCCAATTCCTGAAGAATACCTCTTTTATTCATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAATTCAATCATAAATAGGAG</pcr_primer_p1>
		<pcr_primer_p2>CTGTTACATCAACCACATAACTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGAATTCAATCATAAATAGGAGGTAAGAATTCCAAAAATCCATCTGTCTTTTTTTTGTTGAAAATCTTGGATATGAAATTAGAATTAATTTGGCAGTAAATCACTTTTTTATCTGTTTCATCTGGGCTAATTATGAAAACGGTTCTGGTCACCGACTAATCAAACCTTCTTTTCATGGAATTTCAAATACATGGCATTTTAAAATTATTTTTTGAATGTGCAGTATCAGTTATGTGGTTGATGTAACAG</canonical_amplicon>
		<polymorphic_amplicon>TGGAATTCAATCATAAATAGGAGGTAAGAATTCCAAAAATCCATCTGTCTTTTTTTTGTTGAAAATCTTGGATATGAAATTAGAATTAATTTGGCAGTAAATCACTTTTTTATYTGTTTCATCTGGGCTAATTATGAAAACGGTTCTGGTCACCGACTAATCAAACCTTCTTTTCATGGAATTTCAAATACATGGCATTTTAAAATTATTTTTTGAATGTGCAGTATCAGTTATGTGGTTGATGTAACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3630</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>89048</contig_pos>
        <strand></strand>
        <context>GAAATTAGAA[T/A]WAATTTGGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAAATCCATCTGTCTTTTTTTTGTTGAAAATCTTGGATATGAAATTAGAA</left_flank>
        <right_flank>TAATTTGGCAGTAAATCACTTTTTTATCTGTTTCATCTGGGCTAATTATG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATCTTTCGTGTTAGTTTTTTTCACTGTACTGTAGTCATAGGGTGTCAATATTTGACACTGTTCGCACTTTTCAATGATTCCATAAAATTGTAAAATGAATGATTTTAGCAGATTTTAAAAGATAAATGCTACATCAGAATTAGAAGATCCTCACTTTTTGATTTTCCTACAGCGGTTTTTTGACTGAAAAATAATTTGCAACTTTACTTTAGTACAACTTTTGGCTGTTTCATCTGGGCTGAATGTAAAAAAAGGCTGAAGGCCACCTACTGAAGAAGGAGTTTTCCGTATTTATTTTCTCGATTTTTGTACGTTTTCAGTCAATTTTTTCGCCATCAAAATTTTACGTTATCCGACTTTTTTGCAATGATATCGTCTTTGTAGGAATTCTGGTGTCATTCTCTTAGTTAGGTGGAATTCAATCATAAATAGGAGGTAAGAATTCCAAAAATCCATCTGTCTTTTTTTTGTTGAAAATCTTGGATATGAAATTAGAATTAATTTGGCAGTAAATCACTTTTTTATCTGTTTCATCTGGGCTAATTATGAAAACGGTTCTGGTCACCGACTAATCAAACCTTCTTTTCATGGAATTTCAAATACATGGCATTTTAAAATTATTTTTTGAATGTGCAGTATCAGTTATGTGGTTGATGTAACAGAAAAACTTTTGAAACTCGGAAACGATTATATCGTAATTTGATGATTTCATGAGTTCTGGTTTCACTCTCCTCATAGAAATTTAGCTGGAAAAAATACGTATGCATTTCAAAAGACAATATTCTTATTTTCAATATACAGTACTGGTCAATAAGATTTACAAAAAAAAACAGTTTTTTCAGTTGATTTTCGTTCATTTTGACCATTTTCGCGAGTCTGGAGTTCGCCTGTCAAGTTCCCGATCTCTTTGAAAAACTTTGAGGGTGTAAGACAGATCTAGAAACCTTCGTATTCACAGAATTTTTAGAAAATTCCAGTTTTTGAGCTATTAGCCAATT</canonical>
            <polymorphic>TCATCTTTCGTGTTAGTTTTTTTCACTGTACTGTAGTCATAGGGTGTCAATATTTGACACTGTTCGCACTTTTCAATGATTCCATAAAATTGTAAAATGAATGATTTTAGCAGATTTTAAAAGATAAATGCTACATCAGAATTAGAAGATCCTCACTTTTTGATTTTCCTACAGCGGTTTTTTGACTGAAAAATAATTTGCAACTTTACTTTAGTACAACTTTTGGCTGTTTCATCTGGGCTGAATGTAAAAAAAGGCTGAAGGCCACCTACTGAAGAAGGAGTTTTCCGTATTTATTTTCTCGATTTTTGTACGTTTTCAGTCAATTTTTTCGCCATCAAAATTTTACGTTATCCGACTTTTTTGCAATGATATCGTCTTTGTAGGAATTCTGGTGTCATTCTCTTAGTTAGGTGGAATTCAATCATAAATAGGAGGTAAGAATTCCAAAAATCCATCTGTCTTTTTTTTGTTGAAAATCTTGGATATGAAATTAGAAWTAATTTGGCAGTAAATCACTTTTTTATCTGTTTCATCTGGGCTAATTATGAAAACGGTTCTGGTCACCGACTAATCAAACCTTCTTTTCATGGAATTTCAAATACATGGCATTTTAAAATTATTTTTTGAATGTGCAGTATCAGTTATGTGGTTGATGTAACAGAAAAACTTTTGAAACTCGGAAACGATTATATCGTAATTTGATGATTTCATGAGTTCTGGTTTCACTCTCCTCATAGAAATTTAGCTGGAAAAAATACGTATGCATTTCAAAAGACAATATTCTTATTTTCAATATACAGTACTGGTCAATAAGATTTACAAAAAAAAACAGTTTTTTCAGTTGATTTTCGTTCATTTTGACCATTTTCGCGAGTCTGGAGTTCGCCTGTCAAGTTCCCGATCTCTTTGAAAAACTTTGAGGGTGTAAGACAGATCTAGAAACCTTCGTATTCACAGAATTTTTAGAAAATTCCAGTTTTTGAGCTATTAGCCAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>386 383 117 114</canonical_bands>
                <polymorphic_bands>497 386 117</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>219 130 87 81 55 52 50 49 46 43 42 30 25 25 24 17 11 6 4 4</canonical_bands>
                <polymorphic_bands>219 130 87 81 55 52 50 49 46 43 42 30 25 25 24 17 11 10 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGAATTCAATCATAAATAGGAG</pcr_primer_p1>
		<pcr_primer_p2>CTGTTACATCAACCACATAACTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGAATTCAATCATAAATAGGAGGTAAGAATTCCAAAAATCCATCTGTCTTTTTTTTGTTGAAAATCTTGGATATGAAATTAGAATTAATTTGGCAGTAAATCACTTTTTTATCTGTTTCATCTGGGCTAATTATGAAAACGGTTCTGGTCACCGACTAATCAAACCTTCTTTTCATGGAATTTCAAATACATGGCATTTTAAAATTATTTTTTGAATGTGCAGTATCAGTTATGTGGTTGATGTAACAG</canonical_amplicon>
		<polymorphic_amplicon>TGGAATTCAATCATAAATAGGAGGTAAGAATTCCAAAAATCCATCTGTCTTTTTTTTGTTGAAAATCTTGGATATGAAATTAGAAWTAATTTGGCAGTAAATCACTTTTTTATCTGTTTCATCTGGGCTAATTATGAAAACGGTTCTGGTCACCGACTAATCAAACCTTCTTTTCATGGAATTTCAAATACATGGCATTTTAAAATTATTTTTTGAATGTGCAGTATCAGTTATGTGGTTGATGTAACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3631</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>88997</contig_pos>
        <strand>+</strand>
        <context>TAAGAATTCC[A/C]AAAATCCATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATTCTCTTAGTTAGGTGGAATTCAATCATAAATAGGAGGTAAGAATTCC</left_flank>
        <right_flank>AAAATCCATCTGTCTTTTTTTTGTTGAAAATCTTGGATATGAAATTAGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAACGGTTGGCTTGTTTTGTCAATATTGCAATACTCTCCTAACTTATTCTCATCTTTCGTGTTAGTTTTTTTCACTGTACTGTAGTCATAGGGTGTCAATATTTGACACTGTTCGCACTTTTCAATGATTCCATAAAATTGTAAAATGAATGATTTTAGCAGATTTTAAAAGATAAATGCTACATCAGAATTAGAAGATCCTCACTTTTTGATTTTCCTACAGCGGTTTTTTGACTGAAAAATAATTTGCAACTTTACTTTAGTACAACTTTTGGCTGTTTCATCTGGGCTGAATGTAAAAAAAGGCTGAAGGCCACCTACTGAAGAAGGAGTTTTCCGTATTTATTTTCTCGATTTTTGTACGTTTTCAGTCAATTTTTTCGCCATCAAAATTTTACGTTATCCGACTTTTTTGCAATGATATCGTCTTTGTAGGAATTCTGGTGTCATTCTCTTAGTTAGGTGGAATTCAATCATAAATAGGAGGTAAGAATTCCAAAAATCCATCTGTCTTTTTTTTGTTGAAAATCTTGGATATGAAATTAGAATTAATTTGGCAGTAAATCACTTTTTTATCTGTTTCATCTGGGCTAATTATGAAAACGGTTCTGGTCACCGACTAATCAAACCTTCTTTTCATGGAATTTCAAATACATGGCATTTTAAAATTATTTTTTGAATGTGCAGTATCAGTTATGTGGTTGATGTAACAGAAAAACTTTTGAAACTCGGAAACGATTATATCGTAATTTGATGATTTCATGAGTTCTGGTTTCACTCTCCTCATAGAAATTTAGCTGGAAAAAATACGTATGCATTTCAAAAGACAATATTCTTATTTTCAATATACAGTACTGGTCAATAAGATTTACAAAAAAAAACAGTTTTTTCAGTTGATTTTCGTTCATTTTGACCATTTTCGCGAGTCTGGAGTTCGCCTGTCAAGTTCCCGATCTCTTTGAAAAACTTTGAGGGTGTAAGACAGATCTAGAAACCTT</canonical>
            <polymorphic>AAGAACGGTTGGCTTGTTTTGTCAATATTGCAATACTCTCCTAACTTATTCTCATCTTTCGTGTTAGTTTTTTTCACTGTACTGTAGTCATAGGGTGTCAATATTTGACACTGTTCGCACTTTTCAATGATTCCATAAAATTGTAAAATGAATGATTTTAGCAGATTTTAAAAGATAAATGCTACATCAGAATTAGAAGATCCTCACTTTTTGATTTTCCTACAGCGGTTTTTTGACTGAAAAATAATTTGCAACTTTACTTTAGTACAACTTTTGGCTGTTTCATCTGGGCTGAATGTAAAAAAAGGCTGAAGGCCACCTACTGAAGAAGGAGTTTTCCGTATTTATTTTCTCGATTTTTGTACGTTTTCAGTCAATTTTTTCGCCATCAAAATTTTACGTTATCCGACTTTTTTGCAATGATATCGTCTTTGTAGGAATTCTGGTGTCATTCTCTTAGTTAGGTGGAATTCAATCATAAATAGGAGGTAAGAATTCCMAAAATCCATCTGTCTTTTTTTTGTTGAAAATCTTGGATATGAAATTAGAATTAATTTGGCAGTAAATCACTTTTTTATCTGTTTCATCTGGGCTAATTATGAAAACGGTTCTGGTCACCGACTAATCAAACCTTCTTTTCATGGAATTTCAAATACATGGCATTTTAAAATTATTTTTTGAATGTGCAGTATCAGTTATGTGGTTGATGTAACAGAAAAACTTTTGAAACTCGGAAACGATTATATCGTAATTTGATGATTTCATGAGTTCTGGTTTCACTCTCCTCATAGAAATTTAGCTGGAAAAAATACGTATGCATTTCAAAAGACAATATTCTTATTTTCAATATACAGTACTGGTCAATAAGATTTACAAAAAAAAACAGTTTTTTCAGTTGATTTTCGTTCATTTTGACCATTTTCGCGAGTCTGGAGTTCGCCTGTCAAGTTCCCGATCTCTTTGAAAAACTTTGAGGGTGTAAGACAGATCTAGAAACCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCATTCTCTTAGTTAGGTGGA</pcr_primer_p1>
		<pcr_primer_p2>TAACTGATACTGCACATTCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TGTCATTCTCTTAGTTAGGTGGAATTCAATCATAAATAGGAGGTAAGAATTCCAAAAATCCATCTGTCTTTTTTTTGTTGAAAATCTTGGATATGAAATTAGAATTAATTTGGCAGTAAATCACTTTTTTATCTGTTTCATCTGGGCTAATTATGAAAACGGTTCTGGTCACCGACTAATCAAACCTTCTTTTCATGGAATTTCAAATACATGGCATTTTAAAATTATTTTTTGAATGTGCAGTATCAGTTA</canonical_amplicon>
		<polymorphic_amplicon>TGTCATTCTCTTAGTTAGGTGGAATTCAATCATAAATAGGAGGTAAGAATTCCMAAAATCCATCTGTCTTTTTTTTGTTGAAAATCTTGGATATGAAATTAGAATTAATTTGGCAGTAAATCACTTTTTTATCTGTTTCATCTGGGCTAATTATGAAAACGGTTCTGGTCACCGACTAATCAAACCTTCTTTTCATGGAATTTCAAATACATGGCATTTTAAAATTATTTTTTGAATGTGCAGTATCAGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3648</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>88898</contig_pos>
        <strand></strand>
        <context>aaaattttac[G/T]ttatccgact</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTCGATTTTTGTACGTTTTCAGTCAATTTTTTCGCCATCAAAATTTTAC</left_flank>
        <right_flank>TTATCCGACTTTTTTGCAATGATATCGTCTTTGTAGGAATTCTGGTGTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTAATGCAAAAAATTTTTGGTCGGAGTCCCTCTTTAAGCCCTAATTAGAAAATTTGTTTCTATAGAAATTCGTCTGTTTCATTTCGGCTAATTATAAAGAACGGTTGGCTTGTTTTGTCAATATTGCAATACTCTCCTAACTTATTCTCATCTTTCGTGTTAGTTTTTTTCACTGTACTGTAGTCATAGGGTGTCAATATTTGACACTGTTCGCACTTTTCAATGATTCCATAAAATTGTAAAATGAATGATTTTAGCAGATTTTAAAAGATAAATGCTACATCAGAATTAGAAGATCCTCACTTTTTGATTTTCCTACAGCGGTTTTTTGACTGAAAAATAATTTGCAACTTTACTTTAGTACAACTTTTGGCTGTTTCATCTGGGCTGAATGTAAAAAAAGGCTGAAGGCCACCTACTGAAGAAGGAGTTTTCCGTATTTATTTTCTCGATTTTTGTACGTTTTCAGTCAATTTTTTCGCCATCAAAATTTTACGTTATCCGACTTTTTTGCAATGATATCGTCTTTGTAGGAATTCTGGTGTCATTCTCTTAGTTAGGTGGAATTCAATCATAAATAGGAGGTAAGAATTCCAAAAATCCATCTGTCTTTTTTTTGTTGAAAATCTTGGATATGAAATTAGAATTAATTTGGCAGTAAATCACTTTTTTATCTGTTTCATCTGGGCTAATTATGAAAACGGTTCTGGTCACCGACTAATCAAACCTTCTTTTCATGGAATTTCAAATACATGGCATTTTAAAATTATTTTTTGAATGTGCAGTATCAGTTATGTGGTTGATGTAACAGAAAAACTTTTGAAACTCGGAAACGATTATATCGTAATTTGATGATTTCATGAGTTCTGGTTTCACTCTCCTCATAGAAATTTAGCTGGAAAAAATACGTATGCATTTCAAAAGACAATATTCTTATTTTCAATATACAGTACTGGTCAATAAGATTTACAAAAAAAAACAGTTTTTTCAGTTGATT</canonical>
            <polymorphic>ATTTTAATGCAAAAAATTTTTGGTCGGAGTCCCTCTTTAAGCCCTAATTAGAAAATTTGTTTCTATAGAAATTCGTCTGTTTCATTTCGGCTAATTATAAAGAACGGTTGGCTTGTTTTGTCAATATTGCAATACTCTCCTAACTTATTCTCATCTTTCGTGTTAGTTTTTTTCACTGTACTGTAGTCATAGGGTGTCAATATTTGACACTGTTCGCACTTTTCAATGATTCCATAAAATTGTAAAATGAATGATTTTAGCAGATTTTAAAAGATAAATGCTACATCAGAATTAGAAGATCCTCACTTTTTGATTTTCCTACAGCGGTTTTTTGACTGAAAAATAATTTGCAACTTTACTTTAGTACAACTTTTGGCTGTTTCATCTGGGCTGAATGTAAAAAAAGGCTGAAGGCCACCTACTGAAGAAGGAGTTTTCCGTATTTATTTTCTCGATTTTTGTACGTTTTCAGTCAATTTTTTCGCCATCAAAATTTTACKTTATCCGACTTTTTTGCAATGATATCGTCTTTGTAGGAATTCTGGTGTCATTCTCTTAGTTAGGTGGAATTCAATCATAAATAGGAGGTAAGAATTCCAAAAATCCATCTGTCTTTTTTTTGTTGAAAATCTTGGATATGAAATTAGAATTAATTTGGCAGTAAATCACTTTTTTATCTGTTTCATCTGGGCTAATTATGAAAACGGTTCTGGTCACCGACTAATCAAACCTTCTTTTCATGGAATTTCAAATACATGGCATTTTAAAATTATTTTTTGAATGTGCAGTATCAGTTATGTGGTTGATGTAACAGAAAAACTTTTGAAACTCGGAAACGATTATATCGTAATTTGATGATTTCATGAGTTCTGGTTTCACTCTCCTCATAGAAATTTAGCTGGAAAAAATACGTATGCATTTCAAAAGACAATATTCTTATTTTCAATATACAGTACTGGTCAATAAGATTTACAAAAAAAAACAGTTTTTTCAGTTGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>463 412 90 35</canonical_bands>
                <polymorphic_bands>463 447 90</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCACTTTTTGATTTTCCTACAG</pcr_primer_p1>
		<pcr_primer_p2>AGAATGACACCAGAATTCCTAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CTCACTTTTTGATTTTCCTACAGCGGTTTTTTGACTGAAAAATAATTTGCAACTTTACTTTAGTACAACTTTTGGCTGTTTCATCTGGGCTGAATGTAAAAAAAGGCTGAAGGCCACCTACTGAAGAAGGAGTTTTCCGTATTTATTTTCTCGATTTTTGTACGTTTTCAGTCAATTTTTTCGCCATCAAAATTTTACGTTATCCGACTTTTTTGCAATGATATCGTCTTTGTAGGAATTCTGGTGTCATTCT</canonical_amplicon>
		<polymorphic_amplicon>CTCACTTTTTGATTTTCCTACAGCGGTTTTTTGACTGAAAAATAATTTGCAACTTTACTTTAGTACAACTTTTGGCTGTTTCATCTGGGCTGAATGTAAAAAAAGGCTGAAGGCCACCTACTGAAGAAGGAGTTTTCCGTATTTATTTTCTCGATTTTTGTACGTTTTCAGTCAATTTTTTCGCCATCAAAATTTTACKTTATCCGACTTTTTTGCAATGATATCGTCTTTGTAGGAATTCTGGTGTCATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3715</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>88691</contig_pos>
        <strand>+</strand>
        <context>ACATCAGAAW[C/T]AGAAGATCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAATGAATGATTTTAGCAGATTTTAAAAGATAAATGCTACATCAGAAT</left_flank>
        <right_flank>AGAAGATCCTCACTTTTTGATTTTCCTACAGCGGTTTTTTGACTGAAAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAGGTAAAAAAAACGTAAAAAACCACTGTCGGCGGCTTGAAAAAAGGCTGTCAGGTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGCCGTTTTTCGGGGATTTCGAATTTTCTTTGAATTTTTTCGCAATAATATTTGAAAAATAGATAAATTTTAACACATTTTAATGCAAAAAATTTTTGGTCGGAGTCCCTCTTTAAGCCCTAATTAGAAAATTTGTTTCTATAGAAATTCGTCTGTTTCATTTCGGCTAATTATAAAGAACGGTTGGCTTGTTTTGTCAATATTGCAATACTCTCCTAACTTATTCTCATCTTTCGTGTTAGTTTTTTTCACTGTACTGTAGTCATAGGGTGTCAATATTTGACACTGTTCGCACTTTTCAATGATTCCATAAAATTGTAAAATGAATGATTTTAGCAGATTTTAAAAGATAAATGCTACATCAGAATTAGAAGATCCTCACTTTTTGATTTTCCTACAGCGGTTTTTTGACTGAAAAATAATTTGCAACTTTACTTTAGTACAACTTTTGGCTGTTTCATCTGGGCTGAATGTAAAAAAAGGCTGAAGGCCACCTACTGAAGAAGGAGTTTTCCGTATTTATTTTCTCGATTTTTGTACGTTTTCAGTCAATTTTTTCGCCATCAAAATTTTACGTTATCCGACTTTTTTGCAATGATATCGTCTTTGTAGGAATTCTGGTGTCATTCTCTTAGTTAGGTGGAATTCAATCATAAATAGGAGGTAAGAATTCCAAAAATCCATCTGTCTTTTTTTTGTTGAAAATCTTGGATATGAAATTAGAATTAATTTGGCAGTAAATCACTTTTTTATCTGTTTCATCTGGGCTAATTATGAAAACGGTTCTGGTCACCGACTAATCAAACCTTCTTTTCATGGAATTTCAAATACATGGCATTTTAAAATTATTTTTTGAATGTGCAGTATCA</canonical>
            <polymorphic>GCAGGTAAAAAAAACGTAAAAAACCACTGTCGGCGGCTTGAAAAAAGGCTGTCAGGTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGCCGTTTTTCGGGGATTTCGAATTTTCTTTGAATTTTTTCGCAATAATATTTGAAAAATAGATAAATTTTAACACATTTTAATGCAAAAAATTTTTGGTCGGAGTCCCTCTTTAAGCCCTAATTAGAAAATTTGTTTCTATAGAAATTCGTCTGTTTCATTTCGGCTAATTATAAAGAACGGTTGGCTTGTTTTGTCAATATTGCAATACTCTCCTAACTTATTCTCATCTTTCGTGTTAGTTTTTTTCACTGTACTGTAGTCATAGGGTGTCAATATTTGACACTGTTCGCACTTTTCAATGATTCCATAAAATTGTAAAATGAATGATTTTAGCAGATTTTAAAAGATAAATGCTACATCAGAATYAGAAGATCCTCACTTTTTGATTTTCCTACAGCGGTTTTTTGACTGAAAAATAATTTGCAACTTTACTTTAGTACAACTTTTGGCTGTTTCATCTGGGCTGAATGTAAAAAAAGGCTGAAGGCCACCTACTGAAGAAGGAGTTTTCCGTATTTATTTTCTCGATTTTTGTACGTTTTCAGTCAATTTTTTCGCCATCAAAATTTTACGTTATCCGACTTTTTTGCAATGATATCGTCTTTGTAGGAATTCTGGTGTCATTCTCTTAGTTAGGTGGAATTCAATCATAAATAGGAGGTAAGAATTCCAAAAATCCATCTGTCTTTTTTTTGTTGAAAATCTTGGATATGAAATTAGAATTAATTTGGCAGTAAATCACTTTTTTATCTGTTTCATCTGGGCTAATTATGAAAACGGTTCTGGTCACCGACTAATCAAACCTTCTTTTCATGGAATTTCAAATACATGGCATTTTAAAATTATTTTTTGAATGTGCAGTATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>145 130 113 55 52 50 49 46 42 39 33 31 30 26 25 25 24 23 17 16 11 8 6 4</canonical_bands>
                <polymorphic_bands>145 130 113 107 50 49 46 42 39 33 31 30 26 25 25 24 23 17 16 11 8 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCTCCTAACTTATTCTCATCTTTC</pcr_primer_p1>
		<pcr_primer_p2>AAACAGCCAAAAGTTGTACTAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTCTCCTAACTTATTCTCATCTTTCGTGTTAGTTTTTTTCACTGTACTGTAGTCATAGGGTGTCAATATTTGACACTGTTCGCACTTTTCAATGATTCCATAAAATTGTAAAATGAATGATTTTAGCAGATTTTAAAAGATAAATGCTACATCAGAATTAGAAGATCCTCACTTTTTGATTTTCCTACAGCGGTTTTTTGACTGAAAAATAATTTGCAACTTTACTTTAGTACAACTTTTGGCTGTTT</canonical_amplicon>
		<polymorphic_amplicon>ACTCTCCTAACTTATTCTCATCTTTCGTGTTAGTTTTTTTCACTGTACTGTAGTCATAGGGTGTCAATATTTGACACTGTTCGCACTTTTCAATGATTCCATAAAATTGTAAAATGAATGATTTTAGCAGATTTTAAAAGATAAATGCTACATCAGAATYAGAAGATCCTCACTTTTTGATTTTCCTACAGCGGTTTTTTGACTGAAAAATAATTTGCAACTTTACTTTAGTACAACTTTTGGCTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3716</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>88690</contig_pos>
        <strand>+</strand>
        <context>TACATCAGAA[A/T]YAGAAGATCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTAAAATGAATGATTTTAGCAGATTTTAAAAGATAAATGCTACATCAGAA</left_flank>
        <right_flank>TAGAAGATCCTCACTTTTTGATTTTCCTACAGCGGTTTTTTGACTGAAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCAGGTAAAAAAAACGTAAAAAACCACTGTCGGCGGCTTGAAAAAAGGCTGTCAGGTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGCCGTTTTTCGGGGATTTCGAATTTTCTTTGAATTTTTTCGCAATAATATTTGAAAAATAGATAAATTTTAACACATTTTAATGCAAAAAATTTTTGGTCGGAGTCCCTCTTTAAGCCCTAATTAGAAAATTTGTTTCTATAGAAATTCGTCTGTTTCATTTCGGCTAATTATAAAGAACGGTTGGCTTGTTTTGTCAATATTGCAATACTCTCCTAACTTATTCTCATCTTTCGTGTTAGTTTTTTTCACTGTACTGTAGTCATAGGGTGTCAATATTTGACACTGTTCGCACTTTTCAATGATTCCATAAAATTGTAAAATGAATGATTTTAGCAGATTTTAAAAGATAAATGCTACATCAGAATTAGAAGATCCTCACTTTTTGATTTTCCTACAGCGGTTTTTTGACTGAAAAATAATTTGCAACTTTACTTTAGTACAACTTTTGGCTGTTTCATCTGGGCTGAATGTAAAAAAAGGCTGAAGGCCACCTACTGAAGAAGGAGTTTTCCGTATTTATTTTCTCGATTTTTGTACGTTTTCAGTCAATTTTTTCGCCATCAAAATTTTACGTTATCCGACTTTTTTGCAATGATATCGTCTTTGTAGGAATTCTGGTGTCATTCTCTTAGTTAGGTGGAATTCAATCATAAATAGGAGGTAAGAATTCCAAAAATCCATCTGTCTTTTTTTTGTTGAAAATCTTGGATATGAAATTAGAATTAATTTGGCAGTAAATCACTTTTTTATCTGTTTCATCTGGGCTAATTATGAAAACGGTTCTGGTCACCGACTAATCAAACCTTCTTTTCATGGAATTTCAAATACATGGCATTTTAAAATTATTTTTTGAATGTGCAGTATC</canonical>
            <polymorphic>GGCAGGTAAAAAAAACGTAAAAAACCACTGTCGGCGGCTTGAAAAAAGGCTGTCAGGTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGCCGTTTTTCGGGGATTTCGAATTTTCTTTGAATTTTTTCGCAATAATATTTGAAAAATAGATAAATTTTAACACATTTTAATGCAAAAAATTTTTGGTCGGAGTCCCTCTTTAAGCCCTAATTAGAAAATTTGTTTCTATAGAAATTCGTCTGTTTCATTTCGGCTAATTATAAAGAACGGTTGGCTTGTTTTGTCAATATTGCAATACTCTCCTAACTTATTCTCATCTTTCGTGTTAGTTTTTTTCACTGTACTGTAGTCATAGGGTGTCAATATTTGACACTGTTCGCACTTTTCAATGATTCCATAAAATTGTAAAATGAATGATTTTAGCAGATTTTAAAAGATAAATGCTACATCAGAAWTAGAAGATCCTCACTTTTTGATTTTCCTACAGCGGTTTTTTGACTGAAAAATAATTTGCAACTTTACTTTAGTACAACTTTTGGCTGTTTCATCTGGGCTGAATGTAAAAAAAGGCTGAAGGCCACCTACTGAAGAAGGAGTTTTCCGTATTTATTTTCTCGATTTTTGTACGTTTTCAGTCAATTTTTTCGCCATCAAAATTTTACGTTATCCGACTTTTTTGCAATGATATCGTCTTTGTAGGAATTCTGGTGTCATTCTCTTAGTTAGGTGGAATTCAATCATAAATAGGAGGTAAGAATTCCAAAAATCCATCTGTCTTTTTTTTGTTGAAAATCTTGGATATGAAATTAGAATTAATTTGGCAGTAAATCACTTTTTTATCTGTTTCATCTGGGCTAATTATGAAAACGGTTCTGGTCACCGACTAATCAAACCTTCTTTTCATGGAATTTCAAATACATGGCATTTTAAAATTATTTTTTGAATGTGCAGTATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>145 130 114 55 52 50 49 46 42 39 33 31 30 25 25 25 24 23 17 16 11 8 6 4</canonical_bands>
                <polymorphic_bands>145 130 114 107 50 49 46 42 39 33 31 30 25 25 25 24 23 17 16 11 8 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCTCCTAACTTATTCTCATCTTTC</pcr_primer_p1>
		<pcr_primer_p2>AAACAGCCAAAAGTTGTACTAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTCTCCTAACTTATTCTCATCTTTCGTGTTAGTTTTTTTCACTGTACTGTAGTCATAGGGTGTCAATATTTGACACTGTTCGCACTTTTCAATGATTCCATAAAATTGTAAAATGAATGATTTTAGCAGATTTTAAAAGATAAATGCTACATCAGAATTAGAAGATCCTCACTTTTTGATTTTCCTACAGCGGTTTTTTGACTGAAAAATAATTTGCAACTTTACTTTAGTACAACTTTTGGCTGTTT</canonical_amplicon>
		<polymorphic_amplicon>ACTCTCCTAACTTATTCTCATCTTTCGTGTTAGTTTTTTTCACTGTACTGTAGTCATAGGGTGTCAATATTTGACACTGTTCGCACTTTTCAATGATTCCATAAAATTGTAAAATGAATGATTTTAGCAGATTTTAAAAGATAAATGCTACATCAGAAWTAGAAGATCCTCACTTTTTGATTTTCCTACAGCGGTTTTTTGACTGAAAAATAATTTGCAACTTTACTTTAGTACAACTTTTGGCTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3723</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>93855</contig_pos>
        <strand></strand>
        <context>TAGAAGACAA[A/T]TTGGCTTGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CACAAAAAATTCTTGATTTGCATTTTTTTTTGAAAAAATCTAGAAGACAA</left_flank>
        <right_flank>TTGGCTTGTGAGTTCACCAATATTATTTATTTTTTCTGTCTGGCAATTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGTCAAAATTGGGGGAAAAGCCGGAAAACAAGAACATTTTCAAGTTTCAGGAGTTTTAGGACTTTCGATCACGGCCACTGAGACTACTTAATTTTTCCTAAAAAATGGTTTTCAATGCCCAAACCCTTACTACGATCAGTTTTTTGGAAAAAAAAATATCACAAATGAAAGCAACAGTATTTTTCCATCTGAAAACCGCACTTCAATTTTTTCCATTCTCATTTCTTTATACTTTTCAATAAATCATTTTGTAATGCAATCTGAATGTGTCTGATCTCTGAAAAAACCATGTGTACGCTTCAGAAACCAGATAAACAGAGCTTTGCTGAAAATCTGAAAACCTAAAAATAAATGTTCGTTGTTAAAAAAAATAAATCCCATCATTTGTCAGTTTTCCTTGCGTTTTTAAAAAAATGCGTTCAGCTCCGGAAATCAAATTGTTTAAGACACAAAAAATTCTTGATTTGCATTTTTTTTTGAAAAAATCTAGAAGACAAATTGGCTTGTGAGTTCACCAATATTATTTATTTTTTCTGTCTGGCAATTTTTTCCGTTTCATAAATTTCATGTTTCATGATATTCTAATAAAACAATAATTATGATTTCAGATAGTACACAATTTTCATTGCAGTAAAAGCCTCACATAGAGAAAAAGAACTCGAGACAATTATCTGTAAAACCTCAAAAAGTTGCTTCCAAGGGCACGCTCTCCCACAGTACAATTTCGAGCTGCAAATTAATTGTTGACCTACAGAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCGGATTTTGTGGAGTTCCAAGATGGTTCAAATAATTCTTAAAAAATTGTATGGTCGTTTTCCGGAAGAAAAAATTTCAAAAATGGTCATTTTTGAAAGTTTTTTACAGAAAAAATCTATCTCCTCTTTCAGTTTTTAACATTTTTAGGAGTTCTTTAGCTCAAAAAACCGCAATTATTTTCTCTA</canonical>
            <polymorphic>ATAGTCAAAATTGGGGGAAAAGCCGGAAAACAAGAACATTTTCAAGTTTCAGGAGTTTTAGGACTTTCGATCACGGCCACTGAGACTACTTAATTTTTCCTAAAAAATGGTTTTCAATGCCCAAACCCTTACTACGATCAGTTTTTTGGAAAAAAAAATATCACAAATGAAAGCAACAGTATTTTTCCATCTGAAAACCGCACTTCAATTTTTTCCATTCTCATTTCTTTATACTTTTCAATAAATCATTTTGTAATGCAATCTGAATGTGTCTGATCTCTGAAAAAACCATGTGTACGCTTCAGAAACCAGATAAACAGAGCTTTGCTGAAAATCTGAAAACCTAAAAATAAATGTTCGTTGTTAAAAAAAATAAATCCCATCATTTGTCAGTTTTCCTTGCGTTTTTAAAAAAATGCGTTCAGCTCCGGAAATCAAATTGTTTAAGACACAAAAAATTCTTGATTTGCATTTTTTTTTGAAAAAATCTAGAAGACAAWTTGGCTTGTGAGTTCACCAATATTATTTATTTTTTCTGTCTGGCAATTTTTTCCGTTTCATAAATTTCATGTTTCATGATATTCTAATAAAACAATAATTATGATTTCAGATAGTACACAATTTTCATTGCAGTAAAAGCCTCACATAGAGAAAAAGAACTCGAGACAATTATCTGTAAAACCTCAAAAAGTTGCTTCCAAGGGCACGCTCTCCCACAGTACAATTTCGAGCTGCAAATTAATTGTTGACCTACAGAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCGGATTTTGTGGAGTTCCAAGATGGTTCAAATAATTCTTAAAAAATTGTATGGTCGTTTTCCGGAAGAAAAAATTTCAAAAATGGTCATTTTTGAAAGTTTTTTACAGAAAAAATCTATCTCCTCTTTCAGTTTTTAACATTTTTAGGAGTTCTTTAGCTCAAAAAACCGCAATTATTTTCTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>231 115 100 83 55 48 46 42 42 37 34 28 23 20 19 18 14 14 11 8 8 4</canonical_bands>
                <polymorphic_bands>231 115 100 88 83 55 48 42 37 34 28 23 20 19 18 14 14 11 8 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCAAATTGTTTAAGACACAAA</pcr_primer_p1>
		<pcr_primer_p2>CAGATAATTGTCTCGAGTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAATCAAATTGTTTAAGACACAAAAAATTCTTGATTTGCATTTTTTTTTGAAAAAATCTAGAAGACAAATTGGCTTGTGAGTTCACCAATATTATTTATTTTTTCTGTCTGGCAATTTTTTCCGTTTCATAAATTTCATGTTTCATGATATTCTAATAAAACAATAATTATGATTTCAGATAGTACACAATTTTCATTGCAGTAAAAGCCTCACATAGAGAAAAAGAACTCGAGACAATTATCTG</canonical_amplicon>
		<polymorphic_amplicon>AAATCAAATTGTTTAAGACACAAAAAATTCTTGATTTGCATTTTTTTTTGAAAAAATCTAGAAGACAAWTTGGCTTGTGAGTTCACCAATATTATTTATTTTTTCTGTCTGGCAATTTTTTCCGTTTCATAAATTTCATGTTTCATGATATTCTAATAAAACAATAATTATGATTTCAGATAGTACACAATTTTCATTGCAGTAAAAGCCTCACATAGAGAAAAAGAACTCGAGACAATTATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3724</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>95866</contig_pos>
        <strand></strand>
        <context>AGAGGATATC[C/G]CAAAGGACAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGGGTTCAATTATCGGTTGATGCATCATGTTGCAGCGCCAAGAGGATATC</left_flank>
        <right_flank>CAAAGGACAGAGTAGATTCCCAGGACCCAACTCACCTGGATCCAGGTCAC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGAATATGAATAAAGGACATTGATGAAAAGTTCAGCCTTTCCAATGATTTTTCTTCAAATGTTCAAGTCATCAATCTTATTATAAACTTATGCAAAGTGATAAAATAAATGAAACAAAAATCATAATATTGAAAATTATTTTGTTTCATATTTCTTACATGAACGGAGATATGAAAAACACAGAGAATAAGTAGAAAACAATTCATCATTCATTTGATCCAGTTTCAAAAATAAATGGTTAGATCAATAACTAATTGTCTTATTTTCAGTCTGAACCATCAACAGTAACGCTCCAAATGATCCTGTTTCTGACACTGCATTGTCTGATTTCAGTTACAGGTATTGAAATAAATTATCTCAAATTTGACAGGTTTCTCTAGAACACAACGATCATTTCTAGATCCGCTACTAGCATTTGACCTTTCTTCCGATCCAGTCGAGATGGCCCGGGTTCAATTATCGGTTGATGCATCATGTTGCAGCGCCAAGAGGATATCCCAAAGGACAGAGTAGATTCCCAGGACCCAACTCACCTGGATCCAGGTCACCCGGAACCCGGTCACCCAGGCACAGGACCCTTTCTCCAGGCTCCCTTCTTGGAAGCCCAGAGAAGGCGAGAACTAATTCTCTCCTCCACTTTCTTCTTCCTTTATAGTATTCTCCCTGAGGTCAATGGGGCATGAAGGGTCATGGGTTTCTTTATCAATTCACGTCGATTCTTCGGTGGAGAATGTAATTTTTATGACCACTTAACAAAAAAAATTTCATCACGTTTTAAATAACTAAATATTGAATTTTCGCTTTTGATATCTGTGAAACTTTTCAAAAAGATACTCCTTTTGACCCCAATTATCCTGTTCCAAGTTTGAGATATCCAAAATTGGTCAACTAATGAAATGTTGCTGGTCTTAAGTCAAACATTTTTGCTCTCAAAAGTTTTTTGATATCTTTTACAAGAACCAAGATACATTGAACCAAAGACTCGTTTAAATCTCACG</canonical>
            <polymorphic>AAAGAATATGAATAAAGGACATTGATGAAAAGTTCAGCCTTTCCAATGATTTTTCTTCAAATGTTCAAGTCATCAATCTTATTATAAACTTATGCAAAGTGATAAAATAAATGAAACAAAAATCATAATATTGAAAATTATTTTGTTTCATATTTCTTACATGAACGGAGATATGAAAAACACAGAGAATAAGTAGAAAACAATTCATCATTCATTTGATCCAGTTTCAAAAATAAATGGTTAGATCAATAACTAATTGTCTTATTTTCAGTCTGAACCATCAACAGTAACGCTCCAAATGATCCTGTTTCTGACACTGCATTGTCTGATTTCAGTTACAGGTATTGAAATAAATTATCTCAAATTTGACAGGTTTCTCTAGAACACAACGATCATTTCTAGATCCGCTACTAGCATTTGACCTTTCTTCCGATCCAGTCGAGATGGCCCGGGTTCAATTATCGGTTGATGCATCATGTTGCAGCGCCAAGAGGATATCSCAAAGGACAGAGTAGATTCCCAGGACCCAACTCACCTGGATCCAGGTCACCCGGAACCCGGTCACCCAGGCACAGGACCCTTTCTCCAGGCTCCCTTCTTGGAAGCCCAGAGAAGGCGAGAACTAATTCTCTCCTCCACTTTCTTCTTCCTTTATAGTATTCTCCCTGAGGTCAATGGGGCATGAAGGGTCATGGGTTTCTTTATCAATTCACGTCGATTCTTCGGTGGAGAATGTAATTTTTATGACCACTTAACAAAAAAAATTTCATCACGTTTTAAATAACTAAATATTGAATTTTCGCTTTTGATATCTGTGAAACTTTTCAAAAAGATACTCCTTTTGACCCCAATTATCCTGTTCCAAGTTTGAGATATCCAAAATTGGTCAACTAATGAAATGTTGCTGGTCTTAAGTCAAACATTTTTGCTCTCAAAAGTTTTTTGATATCTTTTACAAGAACCAAGATACATTGAACCAAAGACTCGTTTAAATCTCACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGATCCGCTACTAGCATTTG</pcr_primer_p1>
		<pcr_primer_p2>GAAGAAAGTGGAGGAGAGAATTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTAGATCCGCTACTAGCATTTGACCTTTCTTCCGATCCAGTCGAGATGGCCCGGGTTCAATTATCGGTTGATGCATCATGTTGCAGCGCCAAGAGGATATCCCAAAGGACAGAGTAGATTCCCAGGACCCAACTCACCTGGATCCAGGTCACCCGGAACCCGGTCACCCAGGCACAGGACCCTTTCTCCAGGCTCCCTTCTTGGAAGCCCAGAGAAGGCGAGAACTAATTCTCTCCTCCACTTTCTTC</canonical_amplicon>
		<polymorphic_amplicon>CTAGATCCGCTACTAGCATTTGACCTTTCTTCCGATCCAGTCGAGATGGCCCGGGTTCAATTATCGGTTGATGCATCATGTTGCAGCGCCAAGAGGATATCSCAAAGGACAGAGTAGATTCCCAGGACCCAACTCACCTGGATCCAGGTCACCCGGAACCCGGTCACCCAGGCACAGGACCCTTTCTCCAGGCTCCCTTCTTGGAAGCCCAGAGAAGGCGAGAACTAATTCTCTCCTCCACTTTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3725</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>95752</contig_pos>
        <strand></strand>
        <context>TSTCTAGAAC[A/T]CAACGATCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTACAGGTATTGAAATAAATTATCTCAAATTTGACAGGTTTCTCTAGAAC</left_flank>
        <right_flank>CAACGATCATTTCTAGATCCGCTACTAGCATTTGACCTTTCTTCCGATCC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGCTTCTTCTGCTAAATTGGAACATTCTATTTAAAGCTGCAAGTAGGATTGAAAAGTCATTTTTATAAGGATTAGAAGGGTAAACAACAATAAAAATCTTCATTGATTTCCGAAAAGAATATGAATAAAGGACATTGATGAAAAGTTCAGCCTTTCCAATGATTTTTCTTCAAATGTTCAAGTCATCAATCTTATTATAAACTTATGCAAAGTGATAAAATAAATGAAACAAAAATCATAATATTGAAAATTATTTTGTTTCATATTTCTTACATGAACGGAGATATGAAAAACACAGAGAATAAGTAGAAAACAATTCATCATTCATTTGATCCAGTTTCAAAAATAAATGGTTAGATCAATAACTAATTGTCTTATTTTCAGTCTGAACCATCAACAGTAACGCTCCAAATGATCCTGTTTCTGACACTGCATTGTCTGATTTCAGTTACAGGTATTGAAATAAATTATCTCAAATTTGACAGGTTTCTCTAGAACACAACGATCATTTCTAGATCCGCTACTAGCATTTGACCTTTCTTCCGATCCAGTCGAGATGGCCCGGGTTCAATTATCGGTTGATGCATCATGTTGCAGCGCCAAGAGGATATCCCAAAGGACAGAGTAGATTCCCAGGACCCAACTCACCTGGATCCAGGTCACCCGGAACCCGGTCACCCAGGCACAGGACCCTTTCTCCAGGCTCCCTTCTTGGAAGCCCAGAGAAGGCGAGAACTAATTCTCTCCTCCACTTTCTTCTTCCTTTATAGTATTCTCCCTGAGGTCAATGGGGCATGAAGGGTCATGGGTTTCTTTATCAATTCACGTCGATTCTTCGGTGGAGAATGTAATTTTTATGACCACTTAACAAAAAAAATTTCATCACGTTTTAAATAACTAAATATTGAATTTTCGCTTTTGATATCTGTGAAACTTTTCAAAAAGATACTCCTTTTGACCCCAATTATCCTGTTCCAAGTTTGAGATATCCAAAATTGG</canonical>
            <polymorphic>ATGCTTCTTCTGCTAAATTGGAACATTCTATTTAAAGCTGCAAGTAGGATTGAAAAGTCATTTTTATAAGGATTAGAAGGGTAAACAACAATAAAAATCTTCATTGATTTCCGAAAAGAATATGAATAAAGGACATTGATGAAAAGTTCAGCCTTTCCAATGATTTTTCTTCAAATGTTCAAGTCATCAATCTTATTATAAACTTATGCAAAGTGATAAAATAAATGAAACAAAAATCATAATATTGAAAATTATTTTGTTTCATATTTCTTACATGAACGGAGATATGAAAAACACAGAGAATAAGTAGAAAACAATTCATCATTCATTTGATCCAGTTTCAAAAATAAATGGTTAGATCAATAACTAATTGTCTTATTTTCAGTCTGAACCATCAACAGTAACGCTCCAAATGATCCTGTTTCTGACACTGCATTGTCTGATTTCAGTTACAGGTATTGAAATAAATTATCTCAAATTTGACAGGTTTCTCTAGAACWCAACGATCATTTCTAGATCCGCTACTAGCATTTGACCTTTCTTCCGATCCAGTCGAGATGGCCCGGGTTCAATTATCGGTTGATGCATCATGTTGCAGCGCCAAGAGGATATCCCAAAGGACAGAGTAGATTCCCAGGACCCAACTCACCTGGATCCAGGTCACCCGGAACCCGGTCACCCAGGCACAGGACCCTTTCTCCAGGCTCCCTTCTTGGAAGCCCAGAGAAGGCGAGAACTAATTCTCTCCTCCACTTTCTTCTTCCTTTATAGTATTCTCCCTGAGGTCAATGGGGCATGAAGGGTCATGGGTTTCTTTATCAATTCACGTCGATTCTTCGGTGGAGAATGTAATTTTTATGACCACTTAACAAAAAAAATTTCATCACGTTTTAAATAACTAAATATTGAATTTTCGCTTTTGATATCTGTGAAACTTTTCAAAAAGATACTCCTTTTGACCCCAATTATCCTGTTCCAAGTTTGAGATATCCAAAATTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>215 148 134 81 74 70 69 66 45 22 22 16 15 15 8</canonical_bands>
                <polymorphic_bands>218 215 134 81 74 69 66 45 22 22 16 15 15 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTCTGAACCATCAACAGTAA</pcr_primer_p1>
		<pcr_primer_p2>GGGAATCTACTCTGTCCTTTG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CAGTCTGAACCATCAACAGTAACGCTCCAAATGATCCTGTTTCTGACACTGCATTGTCTGATTTCAGTTACAGGTATTGAAATAAATTATCTCAAATTTGACAGGTTTCTCTAGAACACAACGATCATTTCTAGATCCGCTACTAGCATTTGACCTTTCTTCCGATCCAGTCGAGATGGCCCGGGTTCAATTATCGGTTGATGCATCATGTTGCAGCGCCAAGAGGATATCCCAAAGGACAGAGTAGATTCCC</canonical_amplicon>
		<polymorphic_amplicon>CAGTCTGAACCATCAACAGTAACGCTCCAAATGATCCTGTTTCTGACACTGCATTGTCTGATTTCAGTTACAGGTATTGAAATAAATTATCTCAAATTTGACAGGTTTCTCTAGAACWCAACGATCATTTCTAGATCCGCTACTAGCATTTGACCTTTCTTCCGATCCAGTCGAGATGGCCCGGGTTCAATTATCGGTTGATGCATCATGTTGCAGCGCCAAGAGGATATCCCAAAGGACAGAGTAGATTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3726</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>95743</contig_pos>
        <strand></strand>
        <context>TGACAGGTTT[C/G]TCTAGAACWC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGATTTCAGTTACAGGTATTGAAATAAATTATCTCAAATTTGACAGGTTT</left_flank>
        <right_flank>TCTAGAACACAACGATCATTTCTAGATCCGCTACTAGCATTTGACCTTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACATGTTGATGCTTCTTCTGCTAAATTGGAACATTCTATTTAAAGCTGCAAGTAGGATTGAAAAGTCATTTTTATAAGGATTAGAAGGGTAAACAACAATAAAAATCTTCATTGATTTCCGAAAAGAATATGAATAAAGGACATTGATGAAAAGTTCAGCCTTTCCAATGATTTTTCTTCAAATGTTCAAGTCATCAATCTTATTATAAACTTATGCAAAGTGATAAAATAAATGAAACAAAAATCATAATATTGAAAATTATTTTGTTTCATATTTCTTACATGAACGGAGATATGAAAAACACAGAGAATAAGTAGAAAACAATTCATCATTCATTTGATCCAGTTTCAAAAATAAATGGTTAGATCAATAACTAATTGTCTTATTTTCAGTCTGAACCATCAACAGTAACGCTCCAAATGATCCTGTTTCTGACACTGCATTGTCTGATTTCAGTTACAGGTATTGAAATAAATTATCTCAAATTTGACAGGTTTCTCTAGAACACAACGATCATTTCTAGATCCGCTACTAGCATTTGACCTTTCTTCCGATCCAGTCGAGATGGCCCGGGTTCAATTATCGGTTGATGCATCATGTTGCAGCGCCAAGAGGATATCCCAAAGGACAGAGTAGATTCCCAGGACCCAACTCACCTGGATCCAGGTCACCCGGAACCCGGTCACCCAGGCACAGGACCCTTTCTCCAGGCTCCCTTCTTGGAAGCCCAGAGAAGGCGAGAACTAATTCTCTCCTCCACTTTCTTCTTCCTTTATAGTATTCTCCCTGAGGTCAATGGGGCATGAAGGGTCATGGGTTTCTTTATCAATTCACGTCGATTCTTCGGTGGAGAATGTAATTTTTATGACCACTTAACAAAAAAAATTTCATCACGTTTTAAATAACTAAATATTGAATTTTCGCTTTTGATATCTGTGAAACTTTTCAAAAAGATACTCCTTTTGACCCCAATTATCCTGTTCCAAGTTTGAGATATC</canonical>
            <polymorphic>AACATGTTGATGCTTCTTCTGCTAAATTGGAACATTCTATTTAAAGCTGCAAGTAGGATTGAAAAGTCATTTTTATAAGGATTAGAAGGGTAAACAACAATAAAAATCTTCATTGATTTCCGAAAAGAATATGAATAAAGGACATTGATGAAAAGTTCAGCCTTTCCAATGATTTTTCTTCAAATGTTCAAGTCATCAATCTTATTATAAACTTATGCAAAGTGATAAAATAAATGAAACAAAAATCATAATATTGAAAATTATTTTGTTTCATATTTCTTACATGAACGGAGATATGAAAAACACAGAGAATAAGTAGAAAACAATTCATCATTCATTTGATCCAGTTTCAAAAATAAATGGTTAGATCAATAACTAATTGTCTTATTTTCAGTCTGAACCATCAACAGTAACGCTCCAAATGATCCTGTTTCTGACACTGCATTGTCTGATTTCAGTTACAGGTATTGAAATAAATTATCTCAAATTTGACAGGTTTSTCTAGAACACAACGATCATTTCTAGATCCGCTACTAGCATTTGACCTTTCTTCCGATCCAGTCGAGATGGCCCGGGTTCAATTATCGGTTGATGCATCATGTTGCAGCGCCAAGAGGATATCCCAAAGGACAGAGTAGATTCCCAGGACCCAACTCACCTGGATCCAGGTCACCCGGAACCCGGTCACCCAGGCACAGGACCCTTTCTCCAGGCTCCCTTCTTGGAAGCCCAGAGAAGGCGAGAACTAATTCTCTCCTCCACTTTCTTCTTCCTTTATAGTATTCTCCCTGAGGTCAATGGGGCATGAAGGGTCATGGGTTTCTTTATCAATTCACGTCGATTCTTCGGTGGAGAATGTAATTTTTATGACCACTTAACAAAAAAAATTTCATCACGTTTTAAATAACTAAATATTGAATTTTCGCTTTTGATATCTGTGAAACTTTTCAAAAAGATACTCCTTTTGACCCCAATTATCCTGTTCCAAGTTTGAGATATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTCTGAACCATCAACAGTAA</pcr_primer_p1>
		<pcr_primer_p2>GGGAATCTACTCTGTCCTTTG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CAGTCTGAACCATCAACAGTAACGCTCCAAATGATCCTGTTTCTGACACTGCATTGTCTGATTTCAGTTACAGGTATTGAAATAAATTATCTCAAATTTGACAGGTTTCTCTAGAACACAACGATCATTTCTAGATCCGCTACTAGCATTTGACCTTTCTTCCGATCCAGTCGAGATGGCCCGGGTTCAATTATCGGTTGATGCATCATGTTGCAGCGCCAAGAGGATATCCCAAAGGACAGAGTAGATTCCC</canonical_amplicon>
		<polymorphic_amplicon>CAGTCTGAACCATCAACAGTAACGCTCCAAATGATCCTGTTTCTGACACTGCATTGTCTGATTTCAGTTACAGGTATTGAAATAAATTATCTCAAATTTGACAGGTTTSTCTAGAACACAACGATCATTTCTAGATCCGCTACTAGCATTTGACCTTTCTTCCGATCCAGTCGAGATGGCCCGGGTTCAATTATCGGTTGATGCATCATGTTGCAGCGCCAAGAGGATATCCCAAAGGACAGAGTAGATTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3727</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>95718</contig_pos>
        <strand></strand>
        <context>GTATTGAAAT[A/T]AATTATCTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCCTGTTTCTGACACTGCATTGTCTGATTTCAGTTACAGGTATTGAAAT</left_flank>
        <right_flank>AATTATCTCAAATTTGACAGGTTTCTCTAGAACACAACGATCATTTCTAG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGCAATGATTCATACATCAGGTAAACATGTTGATGCTTCTTCTGCTAAATTGGAACATTCTATTTAAAGCTGCAAGTAGGATTGAAAAGTCATTTTTATAAGGATTAGAAGGGTAAACAACAATAAAAATCTTCATTGATTTCCGAAAAGAATATGAATAAAGGACATTGATGAAAAGTTCAGCCTTTCCAATGATTTTTCTTCAAATGTTCAAGTCATCAATCTTATTATAAACTTATGCAAAGTGATAAAATAAATGAAACAAAAATCATAATATTGAAAATTATTTTGTTTCATATTTCTTACATGAACGGAGATATGAAAAACACAGAGAATAAGTAGAAAACAATTCATCATTCATTTGATCCAGTTTCAAAAATAAATGGTTAGATCAATAACTAATTGTCTTATTTTCAGTCTGAACCATCAACAGTAACGCTCCAAATGATCCTGTTTCTGACACTGCATTGTCTGATTTCAGTTACAGGTATTGAAATAAATTATCTCAAATTTGACAGGTTTCTCTAGAACACAACGATCATTTCTAGATCCGCTACTAGCATTTGACCTTTCTTCCGATCCAGTCGAGATGGCCCGGGTTCAATTATCGGTTGATGCATCATGTTGCAGCGCCAAGAGGATATCCCAAAGGACAGAGTAGATTCCCAGGACCCAACTCACCTGGATCCAGGTCACCCGGAACCCGGTCACCCAGGCACAGGACCCTTTCTCCAGGCTCCCTTCTTGGAAGCCCAGAGAAGGCGAGAACTAATTCTCTCCTCCACTTTCTTCTTCCTTTATAGTATTCTCCCTGAGGTCAATGGGGCATGAAGGGTCATGGGTTTCTTTATCAATTCACGTCGATTCTTCGGTGGAGAATGTAATTTTTATGACCACTTAACAAAAAAAATTTCATCACGTTTTAAATAACTAAATATTGAATTTTCGCTTTTGATATCTGTGAAACTTTTCAAAAAGATACTCCTTTTGACCCCAAT</canonical>
            <polymorphic>GGAGCAATGATTCATACATCAGGTAAACATGTTGATGCTTCTTCTGCTAAATTGGAACATTCTATTTAAAGCTGCAAGTAGGATTGAAAAGTCATTTTTATAAGGATTAGAAGGGTAAACAACAATAAAAATCTTCATTGATTTCCGAAAAGAATATGAATAAAGGACATTGATGAAAAGTTCAGCCTTTCCAATGATTTTTCTTCAAATGTTCAAGTCATCAATCTTATTATAAACTTATGCAAAGTGATAAAATAAATGAAACAAAAATCATAATATTGAAAATTATTTTGTTTCATATTTCTTACATGAACGGAGATATGAAAAACACAGAGAATAAGTAGAAAACAATTCATCATTCATTTGATCCAGTTTCAAAAATAAATGGTTAGATCAATAACTAATTGTCTTATTTTCAGTCTGAACCATCAACAGTAACGCTCCAAATGATCCTGTTTCTGACACTGCATTGTCTGATTTCAGTTACAGGTATTGAAATWAATTATCTCAAATTTGACAGGTTTCTCTAGAACACAACGATCATTTCTAGATCCGCTACTAGCATTTGACCTTTCTTCCGATCCAGTCGAGATGGCCCGGGTTCAATTATCGGTTGATGCATCATGTTGCAGCGCCAAGAGGATATCCCAAAGGACAGAGTAGATTCCCAGGACCCAACTCACCTGGATCCAGGTCACCCGGAACCCGGTCACCCAGGCACAGGACCCTTTCTCCAGGCTCCCTTCTTGGAAGCCCAGAGAAGGCGAGAACTAATTCTCTCCTCCACTTTCTTCTTCCTTTATAGTATTCTCCCTGAGGTCAATGGGGCATGAAGGGTCATGGGTTTCTTTATCAATTCACGTCGATTCTTCGGTGGAGAATGTAATTTTTATGACCACTTAACAAAAAAAATTTCATCACGTTTTAAATAACTAAATATTGAATTTTCGCTTTTGATATCTGTGAAACTTTTCAAAAAGATACTCCTTTTGACCCCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGATATGAAAAACACAGAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATGCTAGTAGCGGATCTAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGAGATATGAAAAACACAGAGAATAAGTAGAAAACAATTCATCATTCATTTGATCCAGTTTCAAAAATAAATGGTTAGATCAATAACTAATTGTCTTATTTTCAGTCTGAACCATCAACAGTAACGCTCCAAATGATCCTGTTTCTGACACTGCATTGTCTGATTTCAGTTACAGGTATTGAAATAAATTATCTCAAATTTGACAGGTTTCTCTAGAACACAACGATCATTTCTAGATCCGCTACTAGCAT</canonical_amplicon>
		<polymorphic_amplicon>GGAGATATGAAAAACACAGAGAATAAGTAGAAAACAATTCATCATTCATTTGATCCAGTTTCAAAAATAAATGGTTAGATCAATAACTAATTGTCTTATTTTCAGTCTGAACCATCAACAGTAACGCTCCAAATGATCCTGTTTCTGACACTGCATTGTCTGATTTCAGTTACAGGTATTGAAATWAATTATCTCAAATTTGACAGGTTTCTCTAGAACACAACGATCATTTCTAGATCCGCTACTAGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3728</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>95694</contig_pos>
        <strand></strand>
        <context>TGCATTGTCT[G/A]ATTTCAGTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CCATCAACAGTAACGCTCCAAATGATCCTGTTTCTGACACTGCATTGTCT</left_flank>
        <right_flank>ATTTCAGTTACAGGTATTGAAATAAATTATCTCAAATTTGACAGGTTTCT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGTTGAGTCTGGAAACCTAGTCTGGAGCAATGATTCATACATCAGGTAAACATGTTGATGCTTCTTCTGCTAAATTGGAACATTCTATTTAAAGCTGCAAGTAGGATTGAAAAGTCATTTTTATAAGGATTAGAAGGGTAAACAACAATAAAAATCTTCATTGATTTCCGAAAAGAATATGAATAAAGGACATTGATGAAAAGTTCAGCCTTTCCAATGATTTTTCTTCAAATGTTCAAGTCATCAATCTTATTATAAACTTATGCAAAGTGATAAAATAAATGAAACAAAAATCATAATATTGAAAATTATTTTGTTTCATATTTCTTACATGAACGGAGATATGAAAAACACAGAGAATAAGTAGAAAACAATTCATCATTCATTTGATCCAGTTTCAAAAATAAATGGTTAGATCAATAACTAATTGTCTTATTTTCAGTCTGAACCATCAACAGTAACGCTCCAAATGATCCTGTTTCTGACACTGCATTGTCTGATTTCAGTTACAGGTATTGAAATAAATTATCTCAAATTTGACAGGTTTCTCTAGAACACAACGATCATTTCTAGATCCGCTACTAGCATTTGACCTTTCTTCCGATCCAGTCGAGATGGCCCGGGTTCAATTATCGGTTGATGCATCATGTTGCAGCGCCAAGAGGATATCCCAAAGGACAGAGTAGATTCCCAGGACCCAACTCACCTGGATCCAGGTCACCCGGAACCCGGTCACCCAGGCACAGGACCCTTTCTCCAGGCTCCCTTCTTGGAAGCCCAGAGAAGGCGAGAACTAATTCTCTCCTCCACTTTCTTCTTCCTTTATAGTATTCTCCCTGAGGTCAATGGGGCATGAAGGGTCATGGGTTTCTTTATCAATTCACGTCGATTCTTCGGTGGAGAATGTAATTTTTATGACCACTTAACAAAAAAAATTTCATCACGTTTTAAATAACTAAATATTGAATTTTCGCTTTTGATATCTGTGAAACTTTTCAA</canonical>
            <polymorphic>GTGTTGAGTCTGGAAACCTAGTCTGGAGCAATGATTCATACATCAGGTAAACATGTTGATGCTTCTTCTGCTAAATTGGAACATTCTATTTAAAGCTGCAAGTAGGATTGAAAAGTCATTTTTATAAGGATTAGAAGGGTAAACAACAATAAAAATCTTCATTGATTTCCGAAAAGAATATGAATAAAGGACATTGATGAAAAGTTCAGCCTTTCCAATGATTTTTCTTCAAATGTTCAAGTCATCAATCTTATTATAAACTTATGCAAAGTGATAAAATAAATGAAACAAAAATCATAATATTGAAAATTATTTTGTTTCATATTTCTTACATGAACGGAGATATGAAAAACACAGAGAATAAGTAGAAAACAATTCATCATTCATTTGATCCAGTTTCAAAAATAAATGGTTAGATCAATAACTAATTGTCTTATTTTCAGTCTGAACCATCAACAGTAACGCTCCAAATGATCCTGTTTCTGACACTGCATTGTCTRATTTCAGTTACAGGTATTGAAATAAATTATCTCAAATTTGACAGGTTTCTCTAGAACACAACGATCATTTCTAGATCCGCTACTAGCATTTGACCTTTCTTCCGATCCAGTCGAGATGGCCCGGGTTCAATTATCGGTTGATGCATCATGTTGCAGCGCCAAGAGGATATCCCAAAGGACAGAGTAGATTCCCAGGACCCAACTCACCTGGATCCAGGTCACCCGGAACCCGGTCACCCAGGCACAGGACCCTTTCTCCAGGCTCCCTTCTTGGAAGCCCAGAGAAGGCGAGAACTAATTCTCTCCTCCACTTTCTTCTTCCTTTATAGTATTCTCCCTGAGGTCAATGGGGCATGAAGGGTCATGGGTTTCTTTATCAATTCACGTCGATTCTTCGGTGGAGAATGTAATTTTTATGACCACTTAACAAAAAAAATTTCATCACGTTTTAAATAACTAAATATTGAATTTTCGCTTTTGATATCTGTGAAACTTTTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>397 276 170 104 38 15</canonical_bands>
                <polymorphic_bands>397 276 170 119 38</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAGATATGAAAAACACAGAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATGCTAGTAGCGGATCTAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGAGATATGAAAAACACAGAGAATAAGTAGAAAACAATTCATCATTCATTTGATCCAGTTTCAAAAATAAATGGTTAGATCAATAACTAATTGTCTTATTTTCAGTCTGAACCATCAACAGTAACGCTCCAAATGATCCTGTTTCTGACACTGCATTGTCTGATTTCAGTTACAGGTATTGAAATAAATTATCTCAAATTTGACAGGTTTCTCTAGAACACAACGATCATTTCTAGATCCGCTACTAGCAT</canonical_amplicon>
		<polymorphic_amplicon>GGAGATATGAAAAACACAGAGAATAAGTAGAAAACAATTCATCATTCATTTGATCCAGTTTCAAAAATAAATGGTTAGATCAATAACTAATTGTCTTATTTTCAGTCTGAACCATCAACAGTAACGCTCCAAATGATCCTGTTTCTGACACTGCATTGTCTRATTTCAGTTACAGGTATTGAAATAAATTATCTCAAATTTGACAGGTTTCTCTAGAACACAACGATCATTTCTAGATCCGCTACTAGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3729</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>95609</contig_pos>
        <strand></strand>
        <context>ATAAATGGTW[A/G]GATCAATAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAGAAAACAATTCATCATTCATTTGATCCAGTTTCAAAAATAAATGGTT</left_flank>
        <right_flank>GATCAATAACTAATTGTCTTATTTTCAGTCTGAACCATCAACAGTAACGC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAACAACAACAAAGAAAATTTGGAAAAAAACTCTTTTTTTTACAATAAAAAACAGATCTACGTTCTAAGTCGTCCGGAGCCACGTGTTGAGTCTGGAAACCTAGTCTGGAGCAATGATTCATACATCAGGTAAACATGTTGATGCTTCTTCTGCTAAATTGGAACATTCTATTTAAAGCTGCAAGTAGGATTGAAAAGTCATTTTTATAAGGATTAGAAGGGTAAACAACAATAAAAATCTTCATTGATTTCCGAAAAGAATATGAATAAAGGACATTGATGAAAAGTTCAGCCTTTCCAATGATTTTTCTTCAAATGTTCAAGTCATCAATCTTATTATAAACTTATGCAAAGTGATAAAATAAATGAAACAAAAATCATAATATTGAAAATTATTTTGTTTCATATTTCTTACATGAACGGAGATATGAAAAACACAGAGAATAAGTAGAAAACAATTCATCATTCATTTGATCCAGTTTCAAAAATAAATGGTTAGATCAATAACTAATTGTCTTATTTTCAGTCTGAACCATCAACAGTAACGCTCCAAATGATCCTGTTTCTGACACTGCATTGTCTGATTTCAGTTACAGGTATTGAAATAAATTATCTCAAATTTGACAGGTTTCTCTAGAACACAACGATCATTTCTAGATCCGCTACTAGCATTTGACCTTTCTTCCGATCCAGTCGAGATGGCCCGGGTTCAATTATCGGTTGATGCATCATGTTGCAGCGCCAAGAGGATATCCCAAAGGACAGAGTAGATTCCCAGGACCCAACTCACCTGGATCCAGGTCACCCGGAACCCGGTCACCCAGGCACAGGACCCTTTCTCCAGGCTCCCTTCTTGGAAGCCCAGAGAAGGCGAGAACTAATTCTCTCCTCCACTTTCTTCTTCCTTTATAGTATTCTCCCTGAGGTCAATGGGGCATGAAGGGTCATGGGTTTCTTTATCAATTCACGTCGATTCTTCGGTGGAGAATGTAATTTTT</canonical>
            <polymorphic>AAAAACAACAACAAAGAAAATTTGGAAAAAAACTCTTTTTTTTACAATAAAAAACAGATCTACGTTCTAAGTCGTCCGGAGCCACGTGTTGAGTCTGGAAACCTAGTCTGGAGCAATGATTCATACATCAGGTAAACATGTTGATGCTTCTTCTGCTAAATTGGAACATTCTATTTAAAGCTGCAAGTAGGATTGAAAAGTCATTTTTATAAGGATTAGAAGGGTAAACAACAATAAAAATCTTCATTGATTTCCGAAAAGAATATGAATAAAGGACATTGATGAAAAGTTCAGCCTTTCCAATGATTTTTCTTCAAATGTTCAAGTCATCAATCTTATTATAAACTTATGCAAAGTGATAAAATAAATGAAACAAAAATCATAATATTGAAAATTATTTTGTTTCATATTTCTTACATGAACGGAGATATGAAAAACACAGAGAATAAGTAGAAAACAATTCATCATTCATTTGATCCAGTTTCAAAAATAAATGGTTRGATCAATAACTAATTGTCTTATTTTCAGTCTGAACCATCAACAGTAACGCTCCAAATGATCCTGTTTCTGACACTGCATTGTCTGATTTCAGTTACAGGTATTGAAATAAATTATCTCAAATTTGACAGGTTTCTCTAGAACACAACGATCATTTCTAGATCCGCTACTAGCATTTGACCTTTCTTCCGATCCAGTCGAGATGGCCCGGGTTCAATTATCGGTTGATGCATCATGTTGCAGCGCCAAGAGGATATCCCAAAGGACAGAGTAGATTCCCAGGACCCAACTCACCTGGATCCAGGTCACCCGGAACCCGGTCACCCAGGCACAGGACCCTTTCTCCAGGCTCCCTTCTTGGAAGCCCAGAGAAGGCGAGAACTAATTCTCTCCTCCACTTTCTTCTTCCTTTATAGTATTCTCCCTGAGGTCAATGGGGCATGAAGGGTCATGGGTTTCTTTATCAATTCACGTCGATTCTTCGGTGGAGAATGTAATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGATATGAAAAACACAGAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATGCTAGTAGCGGATCTAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGAGATATGAAAAACACAGAGAATAAGTAGAAAACAATTCATCATTCATTTGATCCAGTTTCAAAAATAAATGGTTAGATCAATAACTAATTGTCTTATTTTCAGTCTGAACCATCAACAGTAACGCTCCAAATGATCCTGTTTCTGACACTGCATTGTCTGATTTCAGTTACAGGTATTGAAATAAATTATCTCAAATTTGACAGGTTTCTCTAGAACACAACGATCATTTCTAGATCCGCTACTAGCAT</canonical_amplicon>
		<polymorphic_amplicon>GGAGATATGAAAAACACAGAGAATAAGTAGAAAACAATTCATCATTCATTTGATCCAGTTTCAAAAATAAATGGTTRGATCAATAACTAATTGTCTTATTTTCAGTCTGAACCATCAACAGTAACGCTCCAAATGATCCTGTTTCTGACACTGCATTGTCTGATTTCAGTTACAGGTATTGAAATAAATTATCTCAAATTTGACAGGTTTCTCTAGAACACAACGATCATTTCTAGATCCGCTACTAGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3730</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>95608</contig_pos>
        <strand></strand>
        <context>AATAAATGGT[T/A]RGATCAATAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGTAGAAAACAATTCATCATTCATTTGATCCAGTTTCAAAAATAAATGGT</left_flank>
        <right_flank>AGATCAATAACTAATTGTCTTATTTTCAGTCTGAACCATCAACAGTAACG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAACAACAACAAAGAAAATTTGGAAAAAAACTCTTTTTTTTACAATAAAAAACAGATCTACGTTCTAAGTCGTCCGGAGCCACGTGTTGAGTCTGGAAACCTAGTCTGGAGCAATGATTCATACATCAGGTAAACATGTTGATGCTTCTTCTGCTAAATTGGAACATTCTATTTAAAGCTGCAAGTAGGATTGAAAAGTCATTTTTATAAGGATTAGAAGGGTAAACAACAATAAAAATCTTCATTGATTTCCGAAAAGAATATGAATAAAGGACATTGATGAAAAGTTCAGCCTTTCCAATGATTTTTCTTCAAATGTTCAAGTCATCAATCTTATTATAAACTTATGCAAAGTGATAAAATAAATGAAACAAAAATCATAATATTGAAAATTATTTTGTTTCATATTTCTTACATGAACGGAGATATGAAAAACACAGAGAATAAGTAGAAAACAATTCATCATTCATTTGATCCAGTTTCAAAAATAAATGGTTAGATCAATAACTAATTGTCTTATTTTCAGTCTGAACCATCAACAGTAACGCTCCAAATGATCCTGTTTCTGACACTGCATTGTCTGATTTCAGTTACAGGTATTGAAATAAATTATCTCAAATTTGACAGGTTTCTCTAGAACACAACGATCATTTCTAGATCCGCTACTAGCATTTGACCTTTCTTCCGATCCAGTCGAGATGGCCCGGGTTCAATTATCGGTTGATGCATCATGTTGCAGCGCCAAGAGGATATCCCAAAGGACAGAGTAGATTCCCAGGACCCAACTCACCTGGATCCAGGTCACCCGGAACCCGGTCACCCAGGCACAGGACCCTTTCTCCAGGCTCCCTTCTTGGAAGCCCAGAGAAGGCGAGAACTAATTCTCTCCTCCACTTTCTTCTTCCTTTATAGTATTCTCCCTGAGGTCAATGGGGCATGAAGGGTCATGGGTTTCTTTATCAATTCACGTCGATTCTTCGGTGGAGAATGTAATTTT</canonical>
            <polymorphic>AAAAAACAACAACAAAGAAAATTTGGAAAAAAACTCTTTTTTTTACAATAAAAAACAGATCTACGTTCTAAGTCGTCCGGAGCCACGTGTTGAGTCTGGAAACCTAGTCTGGAGCAATGATTCATACATCAGGTAAACATGTTGATGCTTCTTCTGCTAAATTGGAACATTCTATTTAAAGCTGCAAGTAGGATTGAAAAGTCATTTTTATAAGGATTAGAAGGGTAAACAACAATAAAAATCTTCATTGATTTCCGAAAAGAATATGAATAAAGGACATTGATGAAAAGTTCAGCCTTTCCAATGATTTTTCTTCAAATGTTCAAGTCATCAATCTTATTATAAACTTATGCAAAGTGATAAAATAAATGAAACAAAAATCATAATATTGAAAATTATTTTGTTTCATATTTCTTACATGAACGGAGATATGAAAAACACAGAGAATAAGTAGAAAACAATTCATCATTCATTTGATCCAGTTTCAAAAATAAATGGTWAGATCAATAACTAATTGTCTTATTTTCAGTCTGAACCATCAACAGTAACGCTCCAAATGATCCTGTTTCTGACACTGCATTGTCTGATTTCAGTTACAGGTATTGAAATAAATTATCTCAAATTTGACAGGTTTCTCTAGAACACAACGATCATTTCTAGATCCGCTACTAGCATTTGACCTTTCTTCCGATCCAGTCGAGATGGCCCGGGTTCAATTATCGGTTGATGCATCATGTTGCAGCGCCAAGAGGATATCCCAAAGGACAGAGTAGATTCCCAGGACCCAACTCACCTGGATCCAGGTCACCCGGAACCCGGTCACCCAGGCACAGGACCCTTTCTCCAGGCTCCCTTCTTGGAAGCCCAGAGAAGGCGAGAACTAATTCTCTCCTCCACTTTCTTCTTCCTTTATAGTATTCTCCCTGAGGTCAATGGGGCATGAAGGGTCATGGGTTTCTTTATCAATTCACGTCGATTCTTCGGTGGAGAATGTAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGATATGAAAAACACAGAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATGCTAGTAGCGGATCTAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGAGATATGAAAAACACAGAGAATAAGTAGAAAACAATTCATCATTCATTTGATCCAGTTTCAAAAATAAATGGTTAGATCAATAACTAATTGTCTTATTTTCAGTCTGAACCATCAACAGTAACGCTCCAAATGATCCTGTTTCTGACACTGCATTGTCTGATTTCAGTTACAGGTATTGAAATAAATTATCTCAAATTTGACAGGTTTCTCTAGAACACAACGATCATTTCTAGATCCGCTACTAGCAT</canonical_amplicon>
		<polymorphic_amplicon>GGAGATATGAAAAACACAGAGAATAAGTAGAAAACAATTCATCATTCATTTGATCCAGTTTCAAAAATAAATGGTWAGATCAATAACTAATTGTCTTATTTTCAGTCTGAACCATCAACAGTAACGCTCCAAATGATCCTGTTTCTGACACTGCATTGTCTGATTTCAGTTACAGGTATTGAAATAAATTATCTCAAATTTGACAGGTTTCTCTAGAACACAACGATCATTTCTAGATCCGCTACTAGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3731</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>95587</contig_pos>
        <strand></strand>
        <context>TTCATTTGAT[C/T]CAGTTTCAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATATGAAAAACACAGAGAATAAGTAGAAAACAATTCATCATTCATTTGAT</left_flank>
        <right_flank>CAGTTTCAAAAATAAATGGTTAGATCAATAACTAATTGTCTTATTTTCAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAAAGAGACCAAAAATCACAAAAAACAACAACAAAGAAAATTTGGAAAAAAACTCTTTTTTTTACAATAAAAAACAGATCTACGTTCTAAGTCGTCCGGAGCCACGTGTTGAGTCTGGAAACCTAGTCTGGAGCAATGATTCATACATCAGGTAAACATGTTGATGCTTCTTCTGCTAAATTGGAACATTCTATTTAAAGCTGCAAGTAGGATTGAAAAGTCATTTTTATAAGGATTAGAAGGGTAAACAACAATAAAAATCTTCATTGATTTCCGAAAAGAATATGAATAAAGGACATTGATGAAAAGTTCAGCCTTTCCAATGATTTTTCTTCAAATGTTCAAGTCATCAATCTTATTATAAACTTATGCAAAGTGATAAAATAAATGAAACAAAAATCATAATATTGAAAATTATTTTGTTTCATATTTCTTACATGAACGGAGATATGAAAAACACAGAGAATAAGTAGAAAACAATTCATCATTCATTTGATCCAGTTTCAAAAATAAATGGTTAGATCAATAACTAATTGTCTTATTTTCAGTCTGAACCATCAACAGTAACGCTCCAAATGATCCTGTTTCTGACACTGCATTGTCTGATTTCAGTTACAGGTATTGAAATAAATTATCTCAAATTTGACAGGTTTCTCTAGAACACAACGATCATTTCTAGATCCGCTACTAGCATTTGACCTTTCTTCCGATCCAGTCGAGATGGCCCGGGTTCAATTATCGGTTGATGCATCATGTTGCAGCGCCAAGAGGATATCCCAAAGGACAGAGTAGATTCCCAGGACCCAACTCACCTGGATCCAGGTCACCCGGAACCCGGTCACCCAGGCACAGGACCCTTTCTCCAGGCTCCCTTCTTGGAAGCCCAGAGAAGGCGAGAACTAATTCTCTCCTCCACTTTCTTCTTCCTTTATAGTATTCTCCCTGAGGTCAATGGGGCATGAAGGGTCATGGGTTTCTTTATCAATTCACGTCGATTC</canonical>
            <polymorphic>TCAAAAGAGACCAAAAATCACAAAAAACAACAACAAAGAAAATTTGGAAAAAAACTCTTTTTTTTACAATAAAAAACAGATCTACGTTCTAAGTCGTCCGGAGCCACGTGTTGAGTCTGGAAACCTAGTCTGGAGCAATGATTCATACATCAGGTAAACATGTTGATGCTTCTTCTGCTAAATTGGAACATTCTATTTAAAGCTGCAAGTAGGATTGAAAAGTCATTTTTATAAGGATTAGAAGGGTAAACAACAATAAAAATCTTCATTGATTTCCGAAAAGAATATGAATAAAGGACATTGATGAAAAGTTCAGCCTTTCCAATGATTTTTCTTCAAATGTTCAAGTCATCAATCTTATTATAAACTTATGCAAAGTGATAAAATAAATGAAACAAAAATCATAATATTGAAAATTATTTTGTTTCATATTTCTTACATGAACGGAGATATGAAAAACACAGAGAATAAGTAGAAAACAATTCATCATTCATTTGATYCAGTTTCAAAAATAAATGGTTAGATCAATAACTAATTGTCTTATTTTCAGTCTGAACCATCAACAGTAACGCTCCAAATGATCCTGTTTCTGACACTGCATTGTCTGATTTCAGTTACAGGTATTGAAATAAATTATCTCAAATTTGACAGGTTTCTCTAGAACACAACGATCATTTCTAGATCCGCTACTAGCATTTGACCTTTCTTCCGATCCAGTCGAGATGGCCCGGGTTCAATTATCGGTTGATGCATCATGTTGCAGCGCCAAGAGGATATCCCAAAGGACAGAGTAGATTCCCAGGACCCAACTCACCTGGATCCAGGTCACCCGGAACCCGGTCACCCAGGCACAGGACCCTTTCTCCAGGCTCCCTTCTTGGAAGCCCAGAGAAGGCGAGAACTAATTCTCTCCTCCACTTTCTTCTTCCTTTATAGTATTCTCCCTGAGGTCAATGGGGCATGAAGGGTCATGGGTTTCTTTATCAATTCACGTCGATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>418 183 107 90 78 57 30 26 11</canonical_bands>
                <polymorphic_bands>444 183 107 90 78 57 30 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAGATATGAAAAACACAGAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATGCTAGTAGCGGATCTAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGAGATATGAAAAACACAGAGAATAAGTAGAAAACAATTCATCATTCATTTGATCCAGTTTCAAAAATAAATGGTTAGATCAATAACTAATTGTCTTATTTTCAGTCTGAACCATCAACAGTAACGCTCCAAATGATCCTGTTTCTGACACTGCATTGTCTGATTTCAGTTACAGGTATTGAAATAAATTATCTCAAATTTGACAGGTTTCTCTAGAACACAACGATCATTTCTAGATCCGCTACTAGCAT</canonical_amplicon>
		<polymorphic_amplicon>GGAGATATGAAAAACACAGAGAATAAGTAGAAAACAATTCATCATTCATTTGATYCAGTTTCAAAAATAAATGGTTAGATCAATAACTAATTGTCTTATTTTCAGTCTGAACCATCAACAGTAACGCTCCAAATGATCCTGTTTCTGACACTGCATTGTCTGATTTCAGTTACAGGTATTGAAATAAATTATCTCAAATTTGACAGGTTTCTCTAGAACACAACGATCATTTCTAGATCCGCTACTAGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3732</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>151803</contig_pos>
        <strand>+</strand>
        <context>ATGAGATTGC[C/T]CAAATCGAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAACTACATTTTAGGGTGATAAAAAATCTGGGTTTTTGGTATGAGATTGC</left_flank>
        <right_flank>CAAATCGAATTTCGCCTAGAATTTCGATGAGGGCGCTATTACTTTGGTGC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAATGGTTACTGGAATCGGTGCCGGCGGACGGAATAGGTCCGAATGAGCATCTGGCTGAAAATCGGTTCTCGATGGAGTACAGCCCATCCATGCACCCGACAATCACTGCTGAAAAGAATATGAATGACAAAACTTTTGGGATTTTGATAAAGGATAAAGAGGGATACAAAAAGGAAATGAGTTGTTTCCGATGCATCCTGGAAGAAATACGTCAATCAGAGTTTTGGAGAGGAGGAGGAGGAGTGTGTGAAAAGTTGGGGATGAAAATTTTTTAGAGAGAAGGAAAAGAAGAGGAAGAGAATGGAAGAGGAAAACGAAGAGGAATAAGTTGAAAAACGGGGGATGATCTTTCGGAAATATAATATGATCTGAAATTACGTCATTCCTGAAATGTCTGAAAATGAAATTTAAGTATGTGATTTGAGTTATGAAAAAATGCGGCTTCGTAACTACATTTTAGGGTGATAAAAAATCTGGGTTTTTGGTATGAGATTGCTCAAATCGAATTTCGCCTAGAATTTCGATGAGGGCGCTATTACTTTGGTGCATCTTTTCGATTTTTAACTTTTTCAAAGCAAAAATTCGACTAATAATTACGAAAAACACATGCTTCTTTAAGAATTTTGCTACCAAACCTAAGCTCCGCTCACTCTCTAATTTTTGGCCTCAACCGCGCATTGAAATTAAACCATAGTAATATATGAATTCAAATTAACTCCTTCGTAAAAAATCAAAGGGAATATTGAACCTAACAAAAATGCGCAGCTAAAACAATAACTTAACACAACCATGAAACAGAAAAAAATCCAAAATTTCTTGATTCAATTTTTCCAAAAAGTCAAAACTAAAAGAATTTGTCTTTTCGAAAAACCAAAATTTATACAAATCAAAGCTTCGAAAGGTTTCCCTTATCTATGTCATATGCCAATTGGAACATCAAAAAAGAAAAGGGGGAAATCTCAGAAAAGTCGGGTGGAATTGCGTAAATCGACATTGT</canonical>
            <polymorphic>TCCAATGGTTACTGGAATCGGTGCCGGCGGACGGAATAGGTCCGAATGAGCATCTGGCTGAAAATCGGTTCTCGATGGAGTACAGCCCATCCATGCACCCGACAATCACTGCTGAAAAGAATATGAATGACAAAACTTTTGGGATTTTGATAAAGGATAAAGAGGGATACAAAAAGGAAATGAGTTGTTTCCGATGCATCCTGGAAGAAATACGTCAATCAGAGTTTTGGAGAGGAGGAGGAGGAGTGTGTGAAAAGTTGGGGATGAAAATTTTTTAGAGAGAAGGAAAAGAAGAGGAAGAGAATGGAAGAGGAAAACGAAGAGGAATAAGTTGAAAAACGGGGGATGATCTTTCGGAAATATAATATGATCTGAAATTACGTCATTCCTGAAATGTCTGAAAATGAAATTTAAGTATGTGATTTGAGTTATGAAAAAATGCGGCTTCGTAACTACATTTTAGGGTGATAAAAAATCTGGGTTTTTGGTATGAGATTGCYCAAATCGAATTTCGCCTAGAATTTCGATGAGGGCGCTATTACTTTGGTGCATCTTTTCGATTTTTAACTTTTTCAAAGCAAAAATTCGACTAATAATTACGAAAAACACATGCTTCTTTAAGAATTTTGCTACCAAACCTAAGCTCCGCTCACTCTCTAATTTTTGGCCTCAACCGCGCATTGAAATTAAACCATAGTAATATATGAATTCAAATTAACTCCTTCGTAAAAAATCAAAGGGAATATTGAACCTAACAAAAATGCGCAGCTAAAACAATAACTTAACACAACCATGAAACAGAAAAAAATCCAAAATTTCTTGATTCAATTTTTCCAAAAAGTCAAAACTAAAAGAATTTGTCTTTTCGAAAAACCAAAATTTATACAAATCAAAGCTTCGAAAGGTTTCCCTTATCTATGTCATATGCCAATTGGAACATCAAAAAAGAAAAGGGGGAAATCTCAGAAAAGTCGGGTGGAATTGCGTAAATCGACATTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGGAAATATAATATGATCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGCTTTGAAAAAGTTAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>TCGGAAATATAATATGATCTGAAATTACGTCATTCCTGAAATGTCTGAAAATGAAATTTAAGTATGTGATTTGAGTTATGAAAAAATGCGGCTTCGTAACTACATTTTAGGGTGATAAAAAATCTGGGTTTTTGGTATGAGATTGCTCAAATCGAATTTCGCCTAGAATTTCGATGAGGGCGCTATTACTTTGGTGCATCTTTTCGATTTTTAACTTTTTCAAAGCAA</canonical_amplicon>
		<polymorphic_amplicon>TCGGAAATATAATATGATCTGAAATTACGTCATTCCTGAAATGTCTGAAAATGAAATTTAAGTATGTGATTTGAGTTATGAAAAAATGCGGCTTCGTAACTACATTTTAGGGTGATAAAAAATCTGGGTTTTTGGTATGAGATTGCYCAAATCGAATTTCGCCTAGAATTTCGATGAGGGCGCTATTACTTTGGTGCATCTTTTCGATTTTTAACTTTTTCAAAGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3733</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>151789</contig_pos>
        <strand>+</strand>
        <context>TCTGGGTTTT[C/T]GGTATGAGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATGCGGCTTCGTAACTACATTTTAGGGTGATAAAAAATCTGGGTTTT</left_flank>
        <right_flank>GGTATGAGATTGCTCAAATCGAATTTCGCCTAGAATTTCGATGAGGGCGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCCTACCGACGATCCAATGGTTACTGGAATCGGTGCCGGCGGACGGAATAGGTCCGAATGAGCATCTGGCTGAAAATCGGTTCTCGATGGAGTACAGCCCATCCATGCACCCGACAATCACTGCTGAAAAGAATATGAATGACAAAACTTTTGGGATTTTGATAAAGGATAAAGAGGGATACAAAAAGGAAATGAGTTGTTTCCGATGCATCCTGGAAGAAATACGTCAATCAGAGTTTTGGAGAGGAGGAGGAGGAGTGTGTGAAAAGTTGGGGATGAAAATTTTTTAGAGAGAAGGAAAAGAAGAGGAAGAGAATGGAAGAGGAAAACGAAGAGGAATAAGTTGAAAAACGGGGGATGATCTTTCGGAAATATAATATGATCTGAAATTACGTCATTCCTGAAATGTCTGAAAATGAAATTTAAGTATGTGATTTGAGTTATGAAAAAATGCGGCTTCGTAACTACATTTTAGGGTGATAAAAAATCTGGGTTTTTGGTATGAGATTGCTCAAATCGAATTTCGCCTAGAATTTCGATGAGGGCGCTATTACTTTGGTGCATCTTTTCGATTTTTAACTTTTTCAAAGCAAAAATTCGACTAATAATTACGAAAAACACATGCTTCTTTAAGAATTTTGCTACCAAACCTAAGCTCCGCTCACTCTCTAATTTTTGGCCTCAACCGCGCATTGAAATTAAACCATAGTAATATATGAATTCAAATTAACTCCTTCGTAAAAAATCAAAGGGAATATTGAACCTAACAAAAATGCGCAGCTAAAACAATAACTTAACACAACCATGAAACAGAAAAAAATCCAAAATTTCTTGATTCAATTTTTCCAAAAAGTCAAAACTAAAAGAATTTGTCTTTTCGAAAAACCAAAATTTATACAAATCAAAGCTTCGAAAGGTTTCCCTTATCTATGTCATATGCCAATTGGAACATCAAAAAAGAAAAGGGGGAAATCTCAGAAAAGTCGGGTGGAATTGCG</canonical>
            <polymorphic>CTTCCTACCGACGATCCAATGGTTACTGGAATCGGTGCCGGCGGACGGAATAGGTCCGAATGAGCATCTGGCTGAAAATCGGTTCTCGATGGAGTACAGCCCATCCATGCACCCGACAATCACTGCTGAAAAGAATATGAATGACAAAACTTTTGGGATTTTGATAAAGGATAAAGAGGGATACAAAAAGGAAATGAGTTGTTTCCGATGCATCCTGGAAGAAATACGTCAATCAGAGTTTTGGAGAGGAGGAGGAGGAGTGTGTGAAAAGTTGGGGATGAAAATTTTTTAGAGAGAAGGAAAAGAAGAGGAAGAGAATGGAAGAGGAAAACGAAGAGGAATAAGTTGAAAAACGGGGGATGATCTTTCGGAAATATAATATGATCTGAAATTACGTCATTCCTGAAATGTCTGAAAATGAAATTTAAGTATGTGATTTGAGTTATGAAAAAATGCGGCTTCGTAACTACATTTTAGGGTGATAAAAAATCTGGGTTTTYGGTATGAGATTGCTCAAATCGAATTTCGCCTAGAATTTCGATGAGGGCGCTATTACTTTGGTGCATCTTTTCGATTTTTAACTTTTTCAAAGCAAAAATTCGACTAATAATTACGAAAAACACATGCTTCTTTAAGAATTTTGCTACCAAACCTAAGCTCCGCTCACTCTCTAATTTTTGGCCTCAACCGCGCATTGAAATTAAACCATAGTAATATATGAATTCAAATTAACTCCTTCGTAAAAAATCAAAGGGAATATTGAACCTAACAAAAATGCGCAGCTAAAACAATAACTTAACACAACCATGAAACAGAAAAAAATCCAAAATTTCTTGATTCAATTTTTCCAAAAAGTCAAAACTAAAAGAATTTGTCTTTTCGAAAAACCAAAATTTATACAAATCAAAGCTTCGAAAGGTTTCCCTTATCTATGTCATATGCCAATTGGAACATCAAAAAAGAAAAGGGGGAAATCTCAGAAAAGTCGGGTGGAATTGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGGAAATATAATATGATCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGCTTTGAAAAAGTTAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>TCGGAAATATAATATGATCTGAAATTACGTCATTCCTGAAATGTCTGAAAATGAAATTTAAGTATGTGATTTGAGTTATGAAAAAATGCGGCTTCGTAACTACATTTTAGGGTGATAAAAAATCTGGGTTTTTGGTATGAGATTGCTCAAATCGAATTTCGCCTAGAATTTCGATGAGGGCGCTATTACTTTGGTGCATCTTTTCGATTTTTAACTTTTTCAAAGCAA</canonical_amplicon>
		<polymorphic_amplicon>TCGGAAATATAATATGATCTGAAATTACGTCATTCCTGAAATGTCTGAAAATGAAATTTAAGTATGTGATTTGAGTTATGAAAAAATGCGGCTTCGTAACTACATTTTAGGGTGATAAAAAATCTGGGTTTTYGGTATGAGATTGCTCAAATCGAATTTCGCCTAGAATTTCGATGAGGGCGCTATTACTTTGGTGCATCTTTTCGATTTTTAACTTTTTCAAAGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3734</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>151716</contig_pos>
        <strand>+</strand>
        <context>AATGAAATTT[A/C]AGTATGTGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAATATGATCTGAAATTACGTCATTCCTGAAATGTCTGAAAATGAAATTT</left_flank>
        <right_flank>AGTATGTGATTTGAGTTATGAAAAAATGCGGCTTCGTAACTACATTTTAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAAATTTCCAGCAATAGAAGGGTGACTCACCAAAAATGAATCCTACGGAAACTTGATTCGACTGGAGGGACCTTCCTACCGACGATCCAATGGTTACTGGAATCGGTGCCGGCGGACGGAATAGGTCCGAATGAGCATCTGGCTGAAAATCGGTTCTCGATGGAGTACAGCCCATCCATGCACCCGACAATCACTGCTGAAAAGAATATGAATGACAAAACTTTTGGGATTTTGATAAAGGATAAAGAGGGATACAAAAAGGAAATGAGTTGTTTCCGATGCATCCTGGAAGAAATACGTCAATCAGAGTTTTGGAGAGGAGGAGGAGGAGTGTGTGAAAAGTTGGGGATGAAAATTTTTTAGAGAGAAGGAAAAGAAGAGGAAGAGAATGGAAGAGGAAAACGAAGAGGAATAAGTTGAAAAACGGGGGATGATCTTTCGGAAATATAATATGATCTGAAATTACGTCATTCCTGAAATGTCTGAAAATGAAATTTAAGTATGTGATTTGAGTTATGAAAAAATGCGGCTTCGTAACTACATTTTAGGGTGATAAAAAATCTGGGTTTTTGGTATGAGATTGCTCAAATCGAATTTCGCCTAGAATTTCGATGAGGGCGCTATTACTTTGGTGCATCTTTTCGATTTTTAACTTTTTCAAAGCAAAAATTCGACTAATAATTACGAAAAACACATGCTTCTTTAAGAATTTTGCTACCAAACCTAAGCTCCGCTCACTCTCTAATTTTTGGCCTCAACCGCGCATTGAAATTAAACCATAGTAATATATGAATTCAAATTAACTCCTTCGTAAAAAATCAAAGGGAATATTGAACCTAACAAAAATGCGCAGCTAAAACAATAACTTAACACAACCATGAAACAGAAAAAAATCCAAAATTTCTTGATTCAATTTTTCCAAAAAGTCAAAACTAAAAGAATTTGTCTTTTCGAAAAACCAAAATTTATACAAATCAAAGCTTCGAAAGGTTTCCCTT</canonical>
            <polymorphic>AAGAAATTTCCAGCAATAGAAGGGTGACTCACCAAAAATGAATCCTACGGAAACTTGATTCGACTGGAGGGACCTTCCTACCGACGATCCAATGGTTACTGGAATCGGTGCCGGCGGACGGAATAGGTCCGAATGAGCATCTGGCTGAAAATCGGTTCTCGATGGAGTACAGCCCATCCATGCACCCGACAATCACTGCTGAAAAGAATATGAATGACAAAACTTTTGGGATTTTGATAAAGGATAAAGAGGGATACAAAAAGGAAATGAGTTGTTTCCGATGCATCCTGGAAGAAATACGTCAATCAGAGTTTTGGAGAGGAGGAGGAGGAGTGTGTGAAAAGTTGGGGATGAAAATTTTTTAGAGAGAAGGAAAAGAAGAGGAAGAGAATGGAAGAGGAAAACGAAGAGGAATAAGTTGAAAAACGGGGGATGATCTTTCGGAAATATAATATGATCTGAAATTACGTCATTCCTGAAATGTCTGAAAATGAAATTTMAGTATGTGATTTGAGTTATGAAAAAATGCGGCTTCGTAACTACATTTTAGGGTGATAAAAAATCTGGGTTTTTGGTATGAGATTGCTCAAATCGAATTTCGCCTAGAATTTCGATGAGGGCGCTATTACTTTGGTGCATCTTTTCGATTTTTAACTTTTTCAAAGCAAAAATTCGACTAATAATTACGAAAAACACATGCTTCTTTAAGAATTTTGCTACCAAACCTAAGCTCCGCTCACTCTCTAATTTTTGGCCTCAACCGCGCATTGAAATTAAACCATAGTAATATATGAATTCAAATTAACTCCTTCGTAAAAAATCAAAGGGAATATTGAACCTAACAAAAATGCGCAGCTAAAACAATAACTTAACACAACCATGAAACAGAAAAAAATCCAAAATTTCTTGATTCAATTTTTCCAAAAAGTCAAAACTAAAAGAATTTGTCTTTTCGAAAAACCAAAATTTATACAAATCAAAGCTTCGAAAGGTTTCCCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>498 153 131 69 67 54 28</canonical_bands>
                <polymorphic_bands>651 131 69 67 54 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGTTTTGGAGAGGAGGAG</pcr_primer_p1>
		<pcr_primer_p2>ATCACCCTAAAATGTAGTTACGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGAGTTTTGGAGAGGAGGAGGAGGAGTGTGTGAAAAGTTGGGGATGAAAATTTTTTAGAGAGAAGGAAAAGAAGAGGAAGAGAATGGAAGAGGAAAACGAAGAGGAATAAGTTGAAAAACGGGGGATGATCTTTCGGAAATATAATATGATCTGAAATTACGTCATTCCTGAAATGTCTGAAAATGAAATTTAAGTATGTGATTTGAGTTATGAAAAAATGCGGCTTCGTAACTACATTTTAGGGTGAT</canonical_amplicon>
		<polymorphic_amplicon>AGAGTTTTGGAGAGGAGGAGGAGGAGTGTGTGAAAAGTTGGGGATGAAAATTTTTTAGAGAGAAGGAAAAGAAGAGGAAGAGAATGGAAGAGGAAAACGAAGAGGAATAAGTTGAAAAACGGGGGATGATCTTTCGGAAATATAATATGATCTGAAATTACGTCATTCCTGAAATGTCTGAAAATGAAATTTMAGTATGTGATTTGAGTTATGAAAAAATGCGGCTTCGTAACTACATTTTAGGGTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3735</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>151612</contig_pos>
        <strand></strand>
        <context>agagaatgga[A/G]gaggaaaacg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGGGATGAAAATTTTTTAGAGAGAAGGAAAAGAAGAGGAAGAGAATGGA</left_flank>
        <right_flank>GAGGAAAACGAAGAGGAATAAGTTGAAAAACGGGGGATGATCTTTCGGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTCCTCCTGAAAATAGTGCTTTGATTTTAAGGATTTCCGTTGGAAGTGCAAATTTGATGAAAGGAAAAGCGTAATCGAATCAAATTATGATTTCATTTAGAGAAAGAAATTTCCAGCAATAGAAGGGTGACTCACCAAAAATGAATCCTACGGAAACTTGATTCGACTGGAGGGACCTTCCTACCGACGATCCAATGGTTACTGGAATCGGTGCCGGCGGACGGAATAGGTCCGAATGAGCATCTGGCTGAAAATCGGTTCTCGATGGAGTACAGCCCATCCATGCACCCGACAATCACTGCTGAAAAGAATATGAATGACAAAACTTTTGGGATTTTGATAAAGGATAAAGAGGGATACAAAAAGGAAATGAGTTGTTTCCGATGCATCCTGGAAGAAATACGTCAATCAGAGTTTTGGAGAGGAGGAGGAGGAGTGTGTGAAAAGTTGGGGATGAAAATTTTTTAGAGAGAAGGAAAAGAAGAGGAAGAGAATGGAAGAGGAAAACGAAGAGGAATAAGTTGAAAAACGGGGGATGATCTTTCGGAAATATAATATGATCTGAAATTACGTCATTCCTGAAATGTCTGAAAATGAAATTTAAGTATGTGATTTGAGTTATGAAAAAATGCGGCTTCGTAACTACATTTTAGGGTGATAAAAAATCTGGGTTTTTGGTATGAGATTGCTCAAATCGAATTTCGCCTAGAATTTCGATGAGGGCGCTATTACTTTGGTGCATCTTTTCGATTTTTAACTTTTTCAAAGCAAAAATTCGACTAATAATTACGAAAAACACATGCTTCTTTAAGAATTTTGCTACCAAACCTAAGCTCCGCTCACTCTCTAATTTTTGGCCTCAACCGCGCATTGAAATTAAACCATAGTAATATATGAATTCAAATTAACTCCTTCGTAAAAAATCAAAGGGAATATTGAACCTAACAAAAATGCGCAGCTAAAACAATAACTTAACACAACCATGAAACAGAAAAAAAT</canonical>
            <polymorphic>GGTCCTCCTGAAAATAGTGCTTTGATTTTAAGGATTTCCGTTGGAAGTGCAAATTTGATGAAAGGAAAAGCGTAATCGAATCAAATTATGATTTCATTTAGAGAAAGAAATTTCCAGCAATAGAAGGGTGACTCACCAAAAATGAATCCTACGGAAACTTGATTCGACTGGAGGGACCTTCCTACCGACGATCCAATGGTTACTGGAATCGGTGCCGGCGGACGGAATAGGTCCGAATGAGCATCTGGCTGAAAATCGGTTCTCGATGGAGTACAGCCCATCCATGCACCCGACAATCACTGCTGAAAAGAATATGAATGACAAAACTTTTGGGATTTTGATAAAGGATAAAGAGGGATACAAAAAGGAAATGAGTTGTTTCCGATGCATCCTGGAAGAAATACGTCAATCAGAGTTTTGGAGAGGAGGAGGAGGAGTGTGTGAAAAGTTGGGGATGAAAATTTTTTAGAGAGAAGGAAAAGAAGAGGAAGAGAATGGARGAGGAAAACGAAGAGGAATAAGTTGAAAAACGGGGGATGATCTTTCGGAAATATAATATGATCTGAAATTACGTCATTCCTGAAATGTCTGAAAATGAAATTTAAGTATGTGATTTGAGTTATGAAAAAATGCGGCTTCGTAACTACATTTTAGGGTGATAAAAAATCTGGGTTTTTGGTATGAGATTGCTCAAATCGAATTTCGCCTAGAATTTCGATGAGGGCGCTATTACTTTGGTGCATCTTTTCGATTTTTAACTTTTTCAAAGCAAAAATTCGACTAATAATTACGAAAAACACATGCTTCTTTAAGAATTTTGCTACCAAACCTAAGCTCCGCTCACTCTCTAATTTTTGGCCTCAACCGCGCATTGAAATTAAACCATAGTAATATATGAATTCAAATTAACTCCTTCGTAAAAAATCAAAGGGAATATTGAACCTAACAAAAATGCGCAGCTAAAACAATAACTTAACACAACCATGAAACAGAAAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATACAAAAAGGAAATGAGTTGTT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTCATTTTCAGACATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GATACAAAAAGGAAATGAGTTGTTTCCGATGCATCCTGGAAGAAATACGTCAATCAGAGTTTTGGAGAGGAGGAGGAGGAGTGTGTGAAAAGTTGGGGATGAAAATTTTTTAGAGAGAAGGAAAAGAAGAGGAAGAGAATGGAAGAGGAAAACGAAGAGGAATAAGTTGAAAAACGGGGGATGATCTTTCGGAAATATAATATGATCTGAAATTACGTCATTCCTGAAATGTCTGAAAATGAAATTT</canonical_amplicon>
		<polymorphic_amplicon>GATACAAAAAGGAAATGAGTTGTTTCCGATGCATCCTGGAAGAAATACGTCAATCAGAGTTTTGGAGAGGAGGAGGAGGAGTGTGTGAAAAGTTGGGGATGAAAATTTTTTAGAGAGAAGGAAAAGAAGAGGAAGAGAATGGARGAGGAAAACGAAGAGGAATAAGTTGAAAAACGGGGGATGATCTTTCGGAAATATAATATGATCTGAAATTACGTCATTCCTGAAATGTCTGAAAATGAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3736</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>151578</contig_pos>
        <strand>+</strand>
        <context>TGAAAATTTT[C/T]TAGAGagaag</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGGAGAGGAGGAGGAGGAGTGTGTGAAAAGTTGGGGATGAAAATTTT</left_flank>
        <right_flank>TAGAGAGAAGGAAAAGAAGAGGAAGAGAATGGAAGAGGAAAACGAAGAGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTTCCTCGATTATGGATCCCTTTCTGGAAGCAGGTCCTCCTGAAAATAGTGCTTTGATTTTAAGGATTTCCGTTGGAAGTGCAAATTTGATGAAAGGAAAAGCGTAATCGAATCAAATTATGATTTCATTTAGAGAAAGAAATTTCCAGCAATAGAAGGGTGACTCACCAAAAATGAATCCTACGGAAACTTGATTCGACTGGAGGGACCTTCCTACCGACGATCCAATGGTTACTGGAATCGGTGCCGGCGGACGGAATAGGTCCGAATGAGCATCTGGCTGAAAATCGGTTCTCGATGGAGTACAGCCCATCCATGCACCCGACAATCACTGCTGAAAAGAATATGAATGACAAAACTTTTGGGATTTTGATAAAGGATAAAGAGGGATACAAAAAGGAAATGAGTTGTTTCCGATGCATCCTGGAAGAAATACGTCAATCAGAGTTTTGGAGAGGAGGAGGAGGAGTGTGTGAAAAGTTGGGGATGAAAATTTTTTAGAGAGAAGGAAAAGAAGAGGAAGAGAATGGAAGAGGAAAACGAAGAGGAATAAGTTGAAAAACGGGGGATGATCTTTCGGAAATATAATATGATCTGAAATTACGTCATTCCTGAAATGTCTGAAAATGAAATTTAAGTATGTGATTTGAGTTATGAAAAAATGCGGCTTCGTAACTACATTTTAGGGTGATAAAAAATCTGGGTTTTTGGTATGAGATTGCTCAAATCGAATTTCGCCTAGAATTTCGATGAGGGCGCTATTACTTTGGTGCATCTTTTCGATTTTTAACTTTTTCAAAGCAAAAATTCGACTAATAATTACGAAAAACACATGCTTCTTTAAGAATTTTGCTACCAAACCTAAGCTCCGCTCACTCTCTAATTTTTGGCCTCAACCGCGCATTGAAATTAAACCATAGTAATATATGAATTCAAATTAACTCCTTCGTAAAAAATCAAAGGGAATATTGAACCTAACAAAAATGCGCAGCTAAAAC</canonical>
            <polymorphic>GAGTTCCTCGATTATGGATCCCTTTCTGGAAGCAGGTCCTCCTGAAAATAGTGCTTTGATTTTAAGGATTTCCGTTGGAAGTGCAAATTTGATGAAAGGAAAAGCGTAATCGAATCAAATTATGATTTCATTTAGAGAAAGAAATTTCCAGCAATAGAAGGGTGACTCACCAAAAATGAATCCTACGGAAACTTGATTCGACTGGAGGGACCTTCCTACCGACGATCCAATGGTTACTGGAATCGGTGCCGGCGGACGGAATAGGTCCGAATGAGCATCTGGCTGAAAATCGGTTCTCGATGGAGTACAGCCCATCCATGCACCCGACAATCACTGCTGAAAAGAATATGAATGACAAAACTTTTGGGATTTTGATAAAGGATAAAGAGGGATACAAAAAGGAAATGAGTTGTTTCCGATGCATCCTGGAAGAAATACGTCAATCAGAGTTTTGGAGAGGAGGAGGAGGAGTGTGTGAAAAGTTGGGGATGAAAATTTTYTAGAGAGAAGGAAAAGAAGAGGAAGAGAATGGAAGAGGAAAACGAAGAGGAATAAGTTGAAAAACGGGGGATGATCTTTCGGAAATATAATATGATCTGAAATTACGTCATTCCTGAAATGTCTGAAAATGAAATTTAAGTATGTGATTTGAGTTATGAAAAAATGCGGCTTCGTAACTACATTTTAGGGTGATAAAAAATCTGGGTTTTTGGTATGAGATTGCTCAAATCGAATTTCGCCTAGAATTTCGATGAGGGCGCTATTACTTTGGTGCATCTTTTCGATTTTTAACTTTTTCAAAGCAAAAATTCGACTAATAATTACGAAAAACACATGCTTCTTTAAGAATTTTGCTACCAAACCTAAGCTCCGCTCACTCTCTAATTTTTGGCCTCAACCGCGCATTGAAATTAAACCATAGTAATATATGAATTCAAATTAACTCCTTCGTAAAAAATCAAAGGGAATATTGAACCTAACAAAAATGCGCAGCTAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATACAAAAAGGAAATGAGTTGTT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTCATTTTCAGACATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GATACAAAAAGGAAATGAGTTGTTTCCGATGCATCCTGGAAGAAATACGTCAATCAGAGTTTTGGAGAGGAGGAGGAGGAGTGTGTGAAAAGTTGGGGATGAAAATTTTTTAGAGAGAAGGAAAAGAAGAGGAAGAGAATGGAAGAGGAAAACGAAGAGGAATAAGTTGAAAAACGGGGGATGATCTTTCGGAAATATAATATGATCTGAAATTACGTCATTCCTGAAATGTCTGAAAATGAAATTT</canonical_amplicon>
		<polymorphic_amplicon>GATACAAAAAGGAAATGAGTTGTTTCCGATGCATCCTGGAAGAAATACGTCAATCAGAGTTTTGGAGAGGAGGAGGAGGAGTGTGTGAAAAGTTGGGGATGAAAATTTTYTAGAGAGAAGGAAAAGAAGAGGAAGAGAATGGAAGAGGAAAACGAAGAGGAATAAGTTGAAAAACGGGGGATGATCTTTCGGAAATATAATATGATCTGAAATTACGTCATTCCTGAAATGTCTGAAAATGAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3737</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>151554</contig_pos>
        <strand>+</strand>
        <context>GAGGAGTGTG[C/T]GAAAAGTTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGGAAGAAATACGTCAATCAGAGTTTTGGAGAGGAGGAGGAGGAGTGTG</left_flank>
        <right_flank>GAAAAGTTGGGGATGAAAATTTTTTAGAGAGAAGGAAAAGAAGAGGAAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAAACAAAGTTAAATGATCCAGTGAGTTCCTCGATTATGGATCCCTTTCTGGAAGCAGGTCCTCCTGAAAATAGTGCTTTGATTTTAAGGATTTCCGTTGGAAGTGCAAATTTGATGAAAGGAAAAGCGTAATCGAATCAAATTATGATTTCATTTAGAGAAAGAAATTTCCAGCAATAGAAGGGTGACTCACCAAAAATGAATCCTACGGAAACTTGATTCGACTGGAGGGACCTTCCTACCGACGATCCAATGGTTACTGGAATCGGTGCCGGCGGACGGAATAGGTCCGAATGAGCATCTGGCTGAAAATCGGTTCTCGATGGAGTACAGCCCATCCATGCACCCGACAATCACTGCTGAAAAGAATATGAATGACAAAACTTTTGGGATTTTGATAAAGGATAAAGAGGGATACAAAAAGGAAATGAGTTGTTTCCGATGCATCCTGGAAGAAATACGTCAATCAGAGTTTTGGAGAGGAGGAGGAGGAGTGTGTGAAAAGTTGGGGATGAAAATTTTTTAGAGAGAAGGAAAAGAAGAGGAAGAGAATGGAAGAGGAAAACGAAGAGGAATAAGTTGAAAAACGGGGGATGATCTTTCGGAAATATAATATGATCTGAAATTACGTCATTCCTGAAATGTCTGAAAATGAAATTTAAGTATGTGATTTGAGTTATGAAAAAATGCGGCTTCGTAACTACATTTTAGGGTGATAAAAAATCTGGGTTTTTGGTATGAGATTGCTCAAATCGAATTTCGCCTAGAATTTCGATGAGGGCGCTATTACTTTGGTGCATCTTTTCGATTTTTAACTTTTTCAAAGCAAAAATTCGACTAATAATTACGAAAAACACATGCTTCTTTAAGAATTTTGCTACCAAACCTAAGCTCCGCTCACTCTCTAATTTTTGGCCTCAACCGCGCATTGAAATTAAACCATAGTAATATATGAATTCAAATTAACTCCTTCGTAAAAAATCAAAGGGAATATTGAAC</canonical>
            <polymorphic>GGAAACAAAGTTAAATGATCCAGTGAGTTCCTCGATTATGGATCCCTTTCTGGAAGCAGGTCCTCCTGAAAATAGTGCTTTGATTTTAAGGATTTCCGTTGGAAGTGCAAATTTGATGAAAGGAAAAGCGTAATCGAATCAAATTATGATTTCATTTAGAGAAAGAAATTTCCAGCAATAGAAGGGTGACTCACCAAAAATGAATCCTACGGAAACTTGATTCGACTGGAGGGACCTTCCTACCGACGATCCAATGGTTACTGGAATCGGTGCCGGCGGACGGAATAGGTCCGAATGAGCATCTGGCTGAAAATCGGTTCTCGATGGAGTACAGCCCATCCATGCACCCGACAATCACTGCTGAAAAGAATATGAATGACAAAACTTTTGGGATTTTGATAAAGGATAAAGAGGGATACAAAAAGGAAATGAGTTGTTTCCGATGCATCCTGGAAGAAATACGTCAATCAGAGTTTTGGAGAGGAGGAGGAGGAGTGTGYGAAAAGTTGGGGATGAAAATTTTTTAGAGAGAAGGAAAAGAAGAGGAAGAGAATGGAAGAGGAAAACGAAGAGGAATAAGTTGAAAAACGGGGGATGATCTTTCGGAAATATAATATGATCTGAAATTACGTCATTCCTGAAATGTCTGAAAATGAAATTTAAGTATGTGATTTGAGTTATGAAAAAATGCGGCTTCGTAACTACATTTTAGGGTGATAAAAAATCTGGGTTTTTGGTATGAGATTGCTCAAATCGAATTTCGCCTAGAATTTCGATGAGGGCGCTATTACTTTGGTGCATCTTTTCGATTTTTAACTTTTTCAAAGCAAAAATTCGACTAATAATTACGAAAAACACATGCTTCTTTAAGAATTTTGCTACCAAACCTAAGCTCCGCTCACTCTCTAATTTTTGGCCTCAACCGCGCATTGAAATTAAACCATAGTAATATATGAATTCAAATTAACTCCTTCGTAAAAAATCAAAGGGAATATTGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>169 140 99 82 81 79 74 59 52 46 44 30 25 11 5 2 2</canonical_bands>
                <polymorphic_bands>171 140 99 82 81 79 74 59 52 46 44 30 25 11 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATACAAAAAGGAAATGAGTTGTT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTCATTTTCAGACATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GATACAAAAAGGAAATGAGTTGTTTCCGATGCATCCTGGAAGAAATACGTCAATCAGAGTTTTGGAGAGGAGGAGGAGGAGTGTGTGAAAAGTTGGGGATGAAAATTTTTTAGAGAGAAGGAAAAGAAGAGGAAGAGAATGGAAGAGGAAAACGAAGAGGAATAAGTTGAAAAACGGGGGATGATCTTTCGGAAATATAATATGATCTGAAATTACGTCATTCCTGAAATGTCTGAAAATGAAATTT</canonical_amplicon>
		<polymorphic_amplicon>GATACAAAAAGGAAATGAGTTGTTTCCGATGCATCCTGGAAGAAATACGTCAATCAGAGTTTTGGAGAGGAGGAGGAGGAGTGTGYGAAAAGTTGGGGATGAAAATTTTTTAGAGAGAAGGAAAAGAAGAGGAAGAGAATGGAAGAGGAAAACGAAGAGGAATAAGTTGAAAAACGGGGGATGATCTTTCGGAAATATAATATGATCTGAAATTACGTCATTCCTGAAATGTCTGAAAATGAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3738</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>151463</contig_pos>
        <strand>+</strand>
        <context>ATAAAGGATA[A/G]AGAGGGATAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCTGAAAAGAATATGAATGACAAAACTTTTGGGATTTTGATAAAGGATA</left_flank>
        <right_flank>AGAGGGATACAAAAAGGAAATGAGTTGTTTCCGATGCATCCTGGAAGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTCAATGCCTCCTGTATATCCTTAATCTGTGTTCCCGTTCCACTGAGTCTTGTAGGCAAATATTGGAAGACAATATCCTCAACAGAAATGGAAACAAAGTTAAATGATCCAGTGAGTTCCTCGATTATGGATCCCTTTCTGGAAGCAGGTCCTCCTGAAAATAGTGCTTTGATTTTAAGGATTTCCGTTGGAAGTGCAAATTTGATGAAAGGAAAAGCGTAATCGAATCAAATTATGATTTCATTTAGAGAAAGAAATTTCCAGCAATAGAAGGGTGACTCACCAAAAATGAATCCTACGGAAACTTGATTCGACTGGAGGGACCTTCCTACCGACGATCCAATGGTTACTGGAATCGGTGCCGGCGGACGGAATAGGTCCGAATGAGCATCTGGCTGAAAATCGGTTCTCGATGGAGTACAGCCCATCCATGCACCCGACAATCACTGCTGAAAAGAATATGAATGACAAAACTTTTGGGATTTTGATAAAGGATAAAGAGGGATACAAAAAGGAAATGAGTTGTTTCCGATGCATCCTGGAAGAAATACGTCAATCAGAGTTTTGGAGAGGAGGAGGAGGAGTGTGTGAAAAGTTGGGGATGAAAATTTTTTAGAGAGAAGGAAAAGAAGAGGAAGAGAATGGAAGAGGAAAACGAAGAGGAATAAGTTGAAAAACGGGGGATGATCTTTCGGAAATATAATATGATCTGAAATTACGTCATTCCTGAAATGTCTGAAAATGAAATTTAAGTATGTGATTTGAGTTATGAAAAAATGCGGCTTCGTAACTACATTTTAGGGTGATAAAAAATCTGGGTTTTTGGTATGAGATTGCTCAAATCGAATTTCGCCTAGAATTTCGATGAGGGCGCTATTACTTTGGTGCATCTTTTCGATTTTTAACTTTTTCAAAGCAAAAATTCGACTAATAATTACGAAAAACACATGCTTCTTTAAGAATTTTGCTACCAAACCTAAGCTCCGCTCACTCTCTAA</canonical>
            <polymorphic>CTCTCAATGCCTCCTGTATATCCTTAATCTGTGTTCCCGTTCCACTGAGTCTTGTAGGCAAATATTGGAAGACAATATCCTCAACAGAAATGGAAACAAAGTTAAATGATCCAGTGAGTTCCTCGATTATGGATCCCTTTCTGGAAGCAGGTCCTCCTGAAAATAGTGCTTTGATTTTAAGGATTTCCGTTGGAAGTGCAAATTTGATGAAAGGAAAAGCGTAATCGAATCAAATTATGATTTCATTTAGAGAAAGAAATTTCCAGCAATAGAAGGGTGACTCACCAAAAATGAATCCTACGGAAACTTGATTCGACTGGAGGGACCTTCCTACCGACGATCCAATGGTTACTGGAATCGGTGCCGGCGGACGGAATAGGTCCGAATGAGCATCTGGCTGAAAATCGGTTCTCGATGGAGTACAGCCCATCCATGCACCCGACAATCACTGCTGAAAAGAATATGAATGACAAAACTTTTGGGATTTTGATAAAGGATARAGAGGGATACAAAAAGGAAATGAGTTGTTTCCGATGCATCCTGGAAGAAATACGTCAATCAGAGTTTTGGAGAGGAGGAGGAGGAGTGTGTGAAAAGTTGGGGATGAAAATTTTTTAGAGAGAAGGAAAAGAAGAGGAAGAGAATGGAAGAGGAAAACGAAGAGGAATAAGTTGAAAAACGGGGGATGATCTTTCGGAAATATAATATGATCTGAAATTACGTCATTCCTGAAATGTCTGAAAATGAAATTTAAGTATGTGATTTGAGTTATGAAAAAATGCGGCTTCGTAACTACATTTTAGGGTGATAAAAAATCTGGGTTTTTGGTATGAGATTGCTCAAATCGAATTTCGCCTAGAATTTCGATGAGGGCGCTATTACTTTGGTGCATCTTTTCGATTTTTAACTTTTTCAAAGCAAAAATTCGACTAATAATTACGAAAAACACATGCTTCTTTAAGAATTTTGCTACCAAACCTAAGCTCCGCTCACTCTCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGGTCCGAATGAGCATCT</pcr_primer_p1>
		<pcr_primer_p2>AAAATTTTCATCCCCAACTT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ATAGGTCCGAATGAGCATCTGGCTGAAAATCGGTTCTCGATGGAGTACAGCCCATCCATGCACCCGACAATCACTGCTGAAAAGAATATGAATGACAAAACTTTTGGGATTTTGATAAAGGATAAAGAGGGATACAAAAAGGAAATGAGTTGTTTCCGATGCATCCTGGAAGAAATACGTCAATCAGAGTTTTGGAGAGGAGGAGGAGGAGTGTGTGAAAAGTTGGGGATGAAAATTTT</canonical_amplicon>
		<polymorphic_amplicon>ATAGGTCCGAATGAGCATCTGGCTGAAAATCGGTTCTCGATGGAGTACAGCCCATCCATGCACCCGACAATCACTGCTGAAAAGAATATGAATGACAAAACTTTTGGGATTTTGATAAAGGATARAGAGGGATACAAAAAGGAAATGAGTTGTTTCCGATGCATCCTGGAAGAAATACGTCAATCAGAGTTTTGGAGAGGAGGAGGAGGAGTGTGTGAAAAGTTGGGGATGAAAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3739</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>151323</contig_pos>
        <strand>+</strand>
        <context>TACTGGAATC[A/G]GTGCCGGCGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTCGACTGGAGGGACCTTCCTACCGACGATCCAATGGTTACTGGAATC</left_flank>
        <right_flank>GTGCCGGCGGACGGAATAGGTCCGAATGAGCATCTGGCTGAAAATCGGTT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCGCCGCGCCCTCAATCCTGGCCCCCACAAGTTCAACTCCTCGAGGGGCATATTTAAGCGGAATTTCGAGAACATTATTTTTTCATGTCCCCCCACCTTTAACCATAGCGATCCCTTGAAAAAAAACTCGTTTCACTCACTCTCAATGCCTCCTGTATATCCTTAATCTGTGTTCCCGTTCCACTGAGTCTTGTAGGCAAATATTGGAAGACAATATCCTCAACAGAAATGGAAACAAAGTTAAATGATCCAGTGAGTTCCTCGATTATGGATCCCTTTCTGGAAGCAGGTCCTCCTGAAAATAGTGCTTTGATTTTAAGGATTTCCGTTGGAAGTGCAAATTTGATGAAAGGAAAAGCGTAATCGAATCAAATTATGATTTCATTTAGAGAAAGAAATTTCCAGCAATAGAAGGGTGACTCACCAAAAATGAATCCTACGGAAACTTGATTCGACTGGAGGGACCTTCCTACCGACGATCCAATGGTTACTGGAATCGGTGCCGGCGGACGGAATAGGTCCGAATGAGCATCTGGCTGAAAATCGGTTCTCGATGGAGTACAGCCCATCCATGCACCCGACAATCACTGCTGAAAAGAATATGAATGACAAAACTTTTGGGATTTTGATAAAGGATAAAGAGGGATACAAAAAGGAAATGAGTTGTTTCCGATGCATCCTGGAAGAAATACGTCAATCAGAGTTTTGGAGAGGAGGAGGAGGAGTGTGTGAAAAGTTGGGGATGAAAATTTTTTAGAGAGAAGGAAAAGAAGAGGAAGAGAATGGAAGAGGAAAACGAAGAGGAATAAGTTGAAAAACGGGGGATGATCTTTCGGAAATATAATATGATCTGAAATTACGTCATTCCTGAAATGTCTGAAAATGAAATTTAAGTATGTGATTTGAGTTATGAAAAAATGCGGCTTCGTAACTACATTTTAGGGTGATAAAAAATCTGGGTTTTTGGTATGAGATTGCTCAAATCGAATTTCGCCTAGA</canonical>
            <polymorphic>GGCGCCGCGCCCTCAATCCTGGCCCCCACAAGTTCAACTCCTCGAGGGGCATATTTAAGCGGAATTTCGAGAACATTATTTTTTCATGTCCCCCCACCTTTAACCATAGCGATCCCTTGAAAAAAAACTCGTTTCACTCACTCTCAATGCCTCCTGTATATCCTTAATCTGTGTTCCCGTTCCACTGAGTCTTGTAGGCAAATATTGGAAGACAATATCCTCAACAGAAATGGAAACAAAGTTAAATGATCCAGTGAGTTCCTCGATTATGGATCCCTTTCTGGAAGCAGGTCCTCCTGAAAATAGTGCTTTGATTTTAAGGATTTCCGTTGGAAGTGCAAATTTGATGAAAGGAAAAGCGTAATCGAATCAAATTATGATTTCATTTAGAGAAAGAAATTTCCAGCAATAGAAGGGTGACTCACCAAAAATGAATCCTACGGAAACTTGATTCGACTGGAGGGACCTTCCTACCGACGATCCAATGGTTACTGGAATCRGTGCCGGCGGACGGAATAGGTCCGAATGAGCATCTGGCTGAAAATCGGTTCTCGATGGAGTACAGCCCATCCATGCACCCGACAATCACTGCTGAAAAGAATATGAATGACAAAACTTTTGGGATTTTGATAAAGGATAAAGAGGGATACAAAAAGGAAATGAGTTGTTTCCGATGCATCCTGGAAGAAATACGTCAATCAGAGTTTTGGAGAGGAGGAGGAGGAGTGTGTGAAAAGTTGGGGATGAAAATTTTTTAGAGAGAAGGAAAAGAAGAGGAAGAGAATGGAAGAGGAAAACGAAGAGGAATAAGTTGAAAAACGGGGGATGATCTTTCGGAAATATAATATGATCTGAAATTACGTCATTCCTGAAATGTCTGAAAATGAAATTTAAGTATGTGATTTGAGTTATGAAAAAATGCGGCTTCGTAACTACATTTTAGGGTGATAAAAAATCTGGGTTTTTGGTATGAGATTGCTCAAATCGAATTTCGCCTAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>500 499 1</canonical_bands>
                <polymorphic_bands>999 1</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>498 250 191 38 20 3</canonical_bands>
                <polymorphic_bands>536 250 191 20 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCGTAATCGAATCAAATTAT</pcr_primer_p1>
		<pcr_primer_p2>TCATATTCTTTTCAGCAGTGATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGCGTAATCGAATCAAATTATGATTTCATTTAGAGAAAGAAATTTCCAGCAATAGAAGGGTGACTCACCAAAAATGAATCCTACGGAAACTTGATTCGACTGGAGGGACCTTCCTACCGACGATCCAATGGTTACTGGAATCGGTGCCGGCGGACGGAATAGGTCCGAATGAGCATCTGGCTGAAAATCGGTTCTCGATGGAGTACAGCCCATCCATGCACCCGACAATCACTGCTGAAAAGAATATGA</canonical_amplicon>
		<polymorphic_amplicon>AAGCGTAATCGAATCAAATTATGATTTCATTTAGAGAAAGAAATTTCCAGCAATAGAAGGGTGACTCACCAAAAATGAATCCTACGGAAACTTGATTCGACTGGAGGGACCTTCCTACCGACGATCCAATGGTTACTGGAATCRGTGCCGGCGGACGGAATAGGTCCGAATGAGCATCTGGCTGAAAATCGGTTCTCGATGGAGTACAGCCCATCCATGCACCCGACAATCACTGCTGAAAAGAATATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3740</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>153399</contig_pos>
        <strand>+</strand>
        <context>ATGTTTTGCA[C/T]GTTTCAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACAATCTTTACTCATAAAAACTGATATTCAGCAATTTCAATGTTTTGCA</left_flank>
        <right_flank>GTTTCAATTTGCTTACCTAAAAATTGAAATCAAACAAAAATGATATGAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACACAGCCATCGGAATTGTTAATCTTTGGAAACTTCCAATTTTTCCAAATTTAGGATTTAGAAATATTCCGAATATTTTTCTCGTTTTCCAGAAACGCGGATTCCAATATCTGGAGTTGTAAAAAGAACAGATTCTTTCAGATCAAGGAACAACACATACTTGCCTACATGCCTTTTAAAATACAGTGAAAAGTTTCATCATTTCTTGAAGTTTTGTTTCTTCATACTGAAAAGTTTTAGGATCTTGGGAATTTATTTCGATACAATTAATTCCGAAATTTTTCGAAATTTTGGAATTTCCGGAATTCTGGTTTCACAAGAATAATAGTAACGGAACCATTTTGCTAATGTCATTCATAACTTGTCTGAAACATAATATTTTTTCAAAATTTCAATAACTGGTTCGGGAAAAACTTTGCATTTTTGCTGTTTCTTCTTTGCGACTTCAAACAATCTTTACTCATAAAAACTGATATTCAGCAATTTCAATGTTTTGCATGTTTCAATTTGCTTACCTAAAAATTGAAATCAAACAAAAATGATATGAAGAACGTTGAATAGTTAGCTTCTGAAATTTATTACCTACCAAGAATGGAAAATCCTAAAAATTCAACAATCTTAATTTCTAGCCCCGAAAGAGTAGCAAAATCCAAAAGCAATCACTAAAAAGAGAGAAAAAAGTGGAAGATCTAATAATGAGTATTCAGAAGGGTTTCTTTTTTTTCGTGCCAAATCAGCCTAGTGACGAAGAATGATAAAAGTTTTGTATGGCTTCCTTCCTGGAGCTACGTGTATTTCAGTTCTTGATTGAGAAAAGTTTGAGACTACAAAAACTACAAAAAAGAGGATCGTAAATTATTCGGTTTCATCTAATCAAGAATATCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAA</canonical>
            <polymorphic>AACACAGCCATCGGAATTGTTAATCTTTGGAAACTTCCAATTTTTCCAAATTTAGGATTTAGAAATATTCCGAATATTTTTCTCGTTTTCCAGAAACGCGGATTCCAATATCTGGAGTTGTAAAAAGAACAGATTCTTTCAGATCAAGGAACAACACATACTTGCCTACATGCCTTTTAAAATACAGTGAAAAGTTTCATCATTTCTTGAAGTTTTGTTTCTTCATACTGAAAAGTTTTAGGATCTTGGGAATTTATTTCGATACAATTAATTCCGAAATTTTTCGAAATTTTGGAATTTCCGGAATTCTGGTTTCACAAGAATAATAGTAACGGAACCATTTTGCTAATGTCATTCATAACTTGTCTGAAACATAATATTTTTTCAAAATTTCAATAACTGGTTCGGGAAAAACTTTGCATTTTTGCTGTTTCTTCTTTGCGACTTCAAACAATCTTTACTCATAAAAACTGATATTCAGCAATTTCAATGTTTTGCAYGTTTCAATTTGCTTACCTAAAAATTGAAATCAAACAAAAATGATATGAAGAACGTTGAATAGTTAGCTTCTGAAATTTATTACCTACCAAGAATGGAAAATCCTAAAAATTCAACAATCTTAATTTCTAGCCCCGAAAGAGTAGCAAAATCCAAAAGCAATCACTAAAAAGAGAGAAAAAAGTGGAAGATCTAATAATGAGTATTCAGAAGGGTTTCTTTTTTTTCGTGCCAAATCAGCCTAGTGACGAAGAATGATAAAAGTTTTGTATGGCTTCCTTCCTGGAGCTACGTGTATTTCAGTTCTTGATTGAGAAAAGTTTGAGACTACAAAAACTACAAAAAAGAGGATCGTAAATTATTCGGTTTCATCTAATCAAGAATATCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>499 329 172</canonical_bands>
                <polymorphic_bands>828 172</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 329 169</canonical_bands>
                <polymorphic_bands>831 169</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTCATTCATAACTTGTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTCCATTCTTGGTAGGTAATAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTCATTCATAACTTGTCTGAAACATAATATTTTTTCAAAATTTCAATAACTGGTTCGGGAAAAACTTTGCATTTTTGCTGTTTCTTCTTTGCGACTTCAAACAATCTTTACTCATAAAAACTGATATTCAGCAATTTCAATGTTTTGCATGTTTCAATTTGCTTACCTAAAAATTGAAATCAAACAAAAATGATATGAAGAACGTTGAATAGTTAGCTTCTGAAATTTATTACCTACCAAGAATGGAAA</canonical_amplicon>
		<polymorphic_amplicon>TGTCATTCATAACTTGTCTGAAACATAATATTTTTTCAAAATTTCAATAACTGGTTCGGGAAAAACTTTGCATTTTTGCTGTTTCTTCTTTGCGACTTCAAACAATCTTTACTCATAAAAACTGATATTCAGCAATTTCAATGTTTTGCAYGTTTCAATTTGCTTACCTAAAAATTGAAATCAAACAAAAATGATATGAAGAACGTTGAATAGTTAGCTTCTGAAATTTATTACCTACCAAGAATGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3741</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>153422</contig_pos>
        <strand>+</strand>
        <context>TTACCTAAAA[A/C]TTGAAATCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATATTCAGCAATTTCAATGTTTTGCATGTTTCAATTTGCTTACCTAAAA</left_flank>
        <right_flank>TTGAAATCAAACAAAAATGATATGAAGAACGTTGAATAGTTAGCTTCTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTTGGAAACTTCCAATTTTTCCAAATTTAGGATTTAGAAATATTCCGAATATTTTTCTCGTTTTCCAGAAACGCGGATTCCAATATCTGGAGTTGTAAAAAGAACAGATTCTTTCAGATCAAGGAACAACACATACTTGCCTACATGCCTTTTAAAATACAGTGAAAAGTTTCATCATTTCTTGAAGTTTTGTTTCTTCATACTGAAAAGTTTTAGGATCTTGGGAATTTATTTCGATACAATTAATTCCGAAATTTTTCGAAATTTTGGAATTTCCGGAATTCTGGTTTCACAAGAATAATAGTAACGGAACCATTTTGCTAATGTCATTCATAACTTGTCTGAAACATAATATTTTTTCAAAATTTCAATAACTGGTTCGGGAAAAACTTTGCATTTTTGCTGTTTCTTCTTTGCGACTTCAAACAATCTTTACTCATAAAAACTGATATTCAGCAATTTCAATGTTTTGCATGTTTCAATTTGCTTACCTAAAAATTGAAATCAAACAAAAATGATATGAAGAACGTTGAATAGTTAGCTTCTGAAATTTATTACCTACCAAGAATGGAAAATCCTAAAAATTCAACAATCTTAATTTCTAGCCCCGAAAGAGTAGCAAAATCCAAAAGCAATCACTAAAAAGAGAGAAAAAAGTGGAAGATCTAATAATGAGTATTCAGAAGGGTTTCTTTTTTTTCGTGCCAAATCAGCCTAGTGACGAAGAATGATAAAAGTTTTGTATGGCTTCCTTCCTGGAGCTACGTGTATTTCAGTTCTTGATTGAGAAAAGTTTGAGACTACAAAAACTACAAAAAAGAGGATCGTAAATTATTCGGTTTCATCTAATCAAGAATATCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAA</canonical>
            <polymorphic>TCTTTGGAAACTTCCAATTTTTCCAAATTTAGGATTTAGAAATATTCCGAATATTTTTCTCGTTTTCCAGAAACGCGGATTCCAATATCTGGAGTTGTAAAAAGAACAGATTCTTTCAGATCAAGGAACAACACATACTTGCCTACATGCCTTTTAAAATACAGTGAAAAGTTTCATCATTTCTTGAAGTTTTGTTTCTTCATACTGAAAAGTTTTAGGATCTTGGGAATTTATTTCGATACAATTAATTCCGAAATTTTTCGAAATTTTGGAATTTCCGGAATTCTGGTTTCACAAGAATAATAGTAACGGAACCATTTTGCTAATGTCATTCATAACTTGTCTGAAACATAATATTTTTTCAAAATTTCAATAACTGGTTCGGGAAAAACTTTGCATTTTTGCTGTTTCTTCTTTGCGACTTCAAACAATCTTTACTCATAAAAACTGATATTCAGCAATTTCAATGTTTTGCATGTTTCAATTTGCTTACCTAAAAMTTGAAATCAAACAAAAATGATATGAAGAACGTTGAATAGTTAGCTTCTGAAATTTATTACCTACCAAGAATGGAAAATCCTAAAAATTCAACAATCTTAATTTCTAGCCCCGAAAGAGTAGCAAAATCCAAAAGCAATCACTAAAAAGAGAGAAAAAAGTGGAAGATCTAATAATGAGTATTCAGAAGGGTTTCTTTTTTTTCGTGCCAAATCAGCCTAGTGACGAAGAATGATAAAAGTTTTGTATGGCTTCCTTCCTGGAGCTACGTGTATTTCAGTTCTTGATTGAGAAAAGTTTGAGACTACAAAAACTACAAAAAAGAGGATCGTAAATTATTCGGTTTCATCTAATCAAGAATATCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>233 202 94 89 84 56 52 34 24 23 16 15 15 14 10 10 9 8 8 4</canonical_bands>
                <polymorphic_bands>233 202 94 89 84 68 56 34 24 23 15 15 14 10 10 9 8 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTCATTCATAACTTGTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTCCATTCTTGGTAGGTAATAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTCATTCATAACTTGTCTGAAACATAATATTTTTTCAAAATTTCAATAACTGGTTCGGGAAAAACTTTGCATTTTTGCTGTTTCTTCTTTGCGACTTCAAACAATCTTTACTCATAAAAACTGATATTCAGCAATTTCAATGTTTTGCATGTTTCAATTTGCTTACCTAAAAATTGAAATCAAACAAAAATGATATGAAGAACGTTGAATAGTTAGCTTCTGAAATTTATTACCTACCAAGAATGGAAA</canonical_amplicon>
		<polymorphic_amplicon>TGTCATTCATAACTTGTCTGAAACATAATATTTTTTCAAAATTTCAATAACTGGTTCGGGAAAAACTTTGCATTTTTGCTGTTTCTTCTTTGCGACTTCAAACAATCTTTACTCATAAAAACTGATATTCAGCAATTTCAATGTTTTGCATGTTTCAATTTGCTTACCTAAAAMTTGAAATCAAACAAAAATGATATGAAGAACGTTGAATAGTTAGCTTCTGAAATTTATTACCTACCAAGAATGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3742</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>153540</contig_pos>
        <strand>+</strand>
        <context>CCCCGAAAGA[A/G]TAGCAAAATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATGGAAAATCCTAAAAATTCAACAATCTTAATTTCTAGCCCCGAAAGA</left_flank>
        <right_flank>TAGCAAAATCCAAAAGCAATCACTAAAAAGAGAGAAAAAAGTGGAAGATC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCAAGGAACAACACATACTTGCCTACATGCCTTTTAAAATACAGTGAAAAGTTTCATCATTTCTTGAAGTTTTGTTTCTTCATACTGAAAAGTTTTAGGATCTTGGGAATTTATTTCGATACAATTAATTCCGAAATTTTTCGAAATTTTGGAATTTCCGGAATTCTGGTTTCACAAGAATAATAGTAACGGAACCATTTTGCTAATGTCATTCATAACTTGTCTGAAACATAATATTTTTTCAAAATTTCAATAACTGGTTCGGGAAAAACTTTGCATTTTTGCTGTTTCTTCTTTGCGACTTCAAACAATCTTTACTCATAAAAACTGATATTCAGCAATTTCAATGTTTTGCATGTTTCAATTTGCTTACCTAAAAATTGAAATCAAACAAAAATGATATGAAGAACGTTGAATAGTTAGCTTCTGAAATTTATTACCTACCAAGAATGGAAAATCCTAAAAATTCAACAATCTTAATTTCTAGCCCCGAAAGAGTAGCAAAATCCAAAAGCAATCACTAAAAAGAGAGAAAAAAGTGGAAGATCTAATAATGAGTATTCAGAAGGGTTTCTTTTTTTTCGTGCCAAATCAGCCTAGTGACGAAGAATGATAAAAGTTTTGTATGGCTTCCTTCCTGGAGCTACGTGTATTTCAGTTCTTGATTGAGAAAAGTTTGAGACTACAAAAACTACAAAAAAGAGGATCGTAAATTATTCGGTTTCATCTAATCAAGAATATCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCCGTCATGTGCACCTTCATCAAAAAATAACTAATTAGACGAAGTATAAATGAAGACAGAGAGAAGGGGGATTTTTGTCCGAGAAGAGAAAGTTTTTGGA</canonical>
            <polymorphic>GATCAAGGAACAACACATACTTGCCTACATGCCTTTTAAAATACAGTGAAAAGTTTCATCATTTCTTGAAGTTTTGTTTCTTCATACTGAAAAGTTTTAGGATCTTGGGAATTTATTTCGATACAATTAATTCCGAAATTTTTCGAAATTTTGGAATTTCCGGAATTCTGGTTTCACAAGAATAATAGTAACGGAACCATTTTGCTAATGTCATTCATAACTTGTCTGAAACATAATATTTTTTCAAAATTTCAATAACTGGTTCGGGAAAAACTTTGCATTTTTGCTGTTTCTTCTTTGCGACTTCAAACAATCTTTACTCATAAAAACTGATATTCAGCAATTTCAATGTTTTGCATGTTTCAATTTGCTTACCTAAAAATTGAAATCAAACAAAAATGATATGAAGAACGTTGAATAGTTAGCTTCTGAAATTTATTACCTACCAAGAATGGAAAATCCTAAAAATTCAACAATCTTAATTTCTAGCCCCGAAAGARTAGCAAAATCCAAAAGCAATCACTAAAAAGAGAGAAAAAAGTGGAAGATCTAATAATGAGTATTCAGAAGGGTTTCTTTTTTTTCGTGCCAAATCAGCCTAGTGACGAAGAATGATAAAAGTTTTGTATGGCTTCCTTCCTGGAGCTACGTGTATTTCAGTTCTTGATTGAGAAAAGTTTGAGACTACAAAAACTACAAAAAAGAGGATCGTAAATTATTCGGTTTCATCTAATCAAGAATATCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCCGTCATGTGCACCTTCATCAAAAAATAACTAATTAGACGAAGTATAAATGAAGACAGAGAGAAGGGGGATTTTTGTCCGAGAAGAGAAAGTTTTTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTACCTACCAAGAATGGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGTCTCAAACTTTTCTCAATCAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTACCTACCAAGAATGGAAAATCCTAAAAATTCAACAATCTTAATTTCTAGCCCCGAAAGAGTAGCAAAATCCAAAAGCAATCACTAAAAAGAGAGAAAAAAGTGGAAGATCTAATAATGAGTATTCAGAAGGGTTTCTTTTTTTTCGTGCCAAATCAGCCTAGTGACGAAGAATGATAAAAGTTTTGTATGGCTTCCTTCCTGGAGCTACGTGTATTTCAGTTCTTGATTGAGAAAAGTTTGAGACT</canonical_amplicon>
		<polymorphic_amplicon>ATTACCTACCAAGAATGGAAAATCCTAAAAATTCAACAATCTTAATTTCTAGCCCCGAAAGARTAGCAAAATCCAAAAGCAATCACTAAAAAGAGAGAAAAAAGTGGAAGATCTAATAATGAGTATTCAGAAGGGTTTCTTTTTTTTCGTGCCAAATCAGCCTAGTGACGAAGAATGATAAAAGTTTTGTATGGCTTCCTTCCTGGAGCTACGTGTATTTCAGTTCTTGATTGAGAAAAGTTTGAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3743</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>153576</contig_pos>
        <strand>+</strand>
        <context>AAAAGAGAGA[A/G]AAAAGTGGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAGCCCCGAAAGAGTAGCAAAATCCAAAAGCAATCACTAAAAAGAGAGA</left_flank>
        <right_flank>AAAAGTGGAAGATCTAATAATGAGTATTCAGAAGGGTTTCTTTTTTTTCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAATACAGTGAAAAGTTTCATCATTTCTTGAAGTTTTGTTTCTTCATACTGAAAAGTTTTAGGATCTTGGGAATTTATTTCGATACAATTAATTCCGAAATTTTTCGAAATTTTGGAATTTCCGGAATTCTGGTTTCACAAGAATAATAGTAACGGAACCATTTTGCTAATGTCATTCATAACTTGTCTGAAACATAATATTTTTTCAAAATTTCAATAACTGGTTCGGGAAAAACTTTGCATTTTTGCTGTTTCTTCTTTGCGACTTCAAACAATCTTTACTCATAAAAACTGATATTCAGCAATTTCAATGTTTTGCATGTTTCAATTTGCTTACCTAAAAATTGAAATCAAACAAAAATGATATGAAGAACGTTGAATAGTTAGCTTCTGAAATTTATTACCTACCAAGAATGGAAAATCCTAAAAATTCAACAATCTTAATTTCTAGCCCCGAAAGAGTAGCAAAATCCAAAAGCAATCACTAAAAAGAGAGAAAAAAGTGGAAGATCTAATAATGAGTATTCAGAAGGGTTTCTTTTTTTTCGTGCCAAATCAGCCTAGTGACGAAGAATGATAAAAGTTTTGTATGGCTTCCTTCCTGGAGCTACGTGTATTTCAGTTCTTGATTGAGAAAAGTTTGAGACTACAAAAACTACAAAAAAGAGGATCGTAAATTATTCGGTTTCATCTAATCAAGAATATCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCCGTCATGTGCACCTTCATCAAAAAATAACTAATTAGACGAAGTATAAATGAAGACAGAGAGAAGGGGGATTTTTGTCCGAGAAGAGAAAGTTTTTGGATTCGTAAGCAAAGCCATACAAGAAGGATTGGCTGTT</canonical>
            <polymorphic>TAAAATACAGTGAAAAGTTTCATCATTTCTTGAAGTTTTGTTTCTTCATACTGAAAAGTTTTAGGATCTTGGGAATTTATTTCGATACAATTAATTCCGAAATTTTTCGAAATTTTGGAATTTCCGGAATTCTGGTTTCACAAGAATAATAGTAACGGAACCATTTTGCTAATGTCATTCATAACTTGTCTGAAACATAATATTTTTTCAAAATTTCAATAACTGGTTCGGGAAAAACTTTGCATTTTTGCTGTTTCTTCTTTGCGACTTCAAACAATCTTTACTCATAAAAACTGATATTCAGCAATTTCAATGTTTTGCATGTTTCAATTTGCTTACCTAAAAATTGAAATCAAACAAAAATGATATGAAGAACGTTGAATAGTTAGCTTCTGAAATTTATTACCTACCAAGAATGGAAAATCCTAAAAATTCAACAATCTTAATTTCTAGCCCCGAAAGAGTAGCAAAATCCAAAAGCAATCACTAAAAAGAGAGARAAAAGTGGAAGATCTAATAATGAGTATTCAGAAGGGTTTCTTTTTTTTCGTGCCAAATCAGCCTAGTGACGAAGAATGATAAAAGTTTTGTATGGCTTCCTTCCTGGAGCTACGTGTATTTCAGTTCTTGATTGAGAAAAGTTTGAGACTACAAAAACTACAAAAAAGAGGATCGTAAATTATTCGGTTTCATCTAATCAAGAATATCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCCGTCATGTGCACCTTCATCAAAAAATAACTAATTAGACGAAGTATAAATGAAGACAGAGAGAAGGGGGATTTTTGTCCGAGAAGAGAAAGTTTTTGGATTCGTAAGCAAAGCCATACAAGAAGGATTGGCTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTACCTACCAAGAATGGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGTCTCAAACTTTTCTCAATCAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTACCTACCAAGAATGGAAAATCCTAAAAATTCAACAATCTTAATTTCTAGCCCCGAAAGAGTAGCAAAATCCAAAAGCAATCACTAAAAAGAGAGAAAAAAGTGGAAGATCTAATAATGAGTATTCAGAAGGGTTTCTTTTTTTTCGTGCCAAATCAGCCTAGTGACGAAGAATGATAAAAGTTTTGTATGGCTTCCTTCCTGGAGCTACGTGTATTTCAGTTCTTGATTGAGAAAAGTTTGAGACT</canonical_amplicon>
		<polymorphic_amplicon>ATTACCTACCAAGAATGGAAAATCCTAAAAATTCAACAATCTTAATTTCTAGCCCCGAAAGAGTAGCAAAATCCAAAAGCAATCACTAAAAAGAGAGARAAAAGTGGAAGATCTAATAATGAGTATTCAGAAGGGTTTCTTTTTTTTCGTGCCAAATCAGCCTAGTGACGAAGAATGATAAAAGTTTTGTATGGCTTCCTTCCTGGAGCTACGTGTATTTCAGTTCTTGATTGAGAAAAGTTTGAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3744</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>153701</contig_pos>
        <strand>+</strand>
        <context>TGTATTTCAG[C/T]TCTTGATTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGATAAAAGTTTTGTATGGCTTCCTTCCTGGAGCTACGTGTATTTCAG</left_flank>
        <right_flank>TCTTGATTGAGAAAAGTTTGAGACTACAAAAACTACAAAAAAGAGGATCG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAATTCTGGTTTCACAAGAATAATAGTAACGGAACCATTTTGCTAATGTCATTCATAACTTGTCTGAAACATAATATTTTTTCAAAATTTCAATAACTGGTTCGGGAAAAACTTTGCATTTTTGCTGTTTCTTCTTTGCGACTTCAAACAATCTTTACTCATAAAAACTGATATTCAGCAATTTCAATGTTTTGCATGTTTCAATTTGCTTACCTAAAAATTGAAATCAAACAAAAATGATATGAAGAACGTTGAATAGTTAGCTTCTGAAATTTATTACCTACCAAGAATGGAAAATCCTAAAAATTCAACAATCTTAATTTCTAGCCCCGAAAGAGTAGCAAAATCCAAAAGCAATCACTAAAAAGAGAGAAAAAAGTGGAAGATCTAATAATGAGTATTCAGAAGGGTTTCTTTTTTTTCGTGCCAAATCAGCCTAGTGACGAAGAATGATAAAAGTTTTGTATGGCTTCCTTCCTGGAGCTACGTGTATTTCAGTTCTTGATTGAGAAAAGTTTGAGACTACAAAAACTACAAAAAAGAGGATCGTAAATTATTCGGTTTCATCTAATCAAGAATATCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCCGTCATGTGCACCTTCATCAAAAAATAACTAATTAGACGAAGTATAAATGAAGACAGAGAGAAGGGGGATTTTTGTCCGAGAAGAGAAAGTTTTTGGATTCGTAAGCAAAGCCATACAAGAAGGATTGGCTGTTGCGACTCGGATTGACGTCACACGTGGATTATCAACGCTATATCAAAAGCATTCAAAGTAGTAGTCGTTGGGGAGATGGAGAAAGAGAGACAGGAAATGCAAAAAGGGACAAAGTTTTAAGGATAC</canonical>
            <polymorphic>GGAATTCTGGTTTCACAAGAATAATAGTAACGGAACCATTTTGCTAATGTCATTCATAACTTGTCTGAAACATAATATTTTTTCAAAATTTCAATAACTGGTTCGGGAAAAACTTTGCATTTTTGCTGTTTCTTCTTTGCGACTTCAAACAATCTTTACTCATAAAAACTGATATTCAGCAATTTCAATGTTTTGCATGTTTCAATTTGCTTACCTAAAAATTGAAATCAAACAAAAATGATATGAAGAACGTTGAATAGTTAGCTTCTGAAATTTATTACCTACCAAGAATGGAAAATCCTAAAAATTCAACAATCTTAATTTCTAGCCCCGAAAGAGTAGCAAAATCCAAAAGCAATCACTAAAAAGAGAGAAAAAAGTGGAAGATCTAATAATGAGTATTCAGAAGGGTTTCTTTTTTTTCGTGCCAAATCAGCCTAGTGACGAAGAATGATAAAAGTTTTGTATGGCTTCCTTCCTGGAGCTACGTGTATTTCAGYTCTTGATTGAGAAAAGTTTGAGACTACAAAAACTACAAAAAAGAGGATCGTAAATTATTCGGTTTCATCTAATCAAGAATATCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCCGTCATGTGCACCTTCATCAAAAAATAACTAATTAGACGAAGTATAAATGAAGACAGAGAGAAGGGGGATTTTTGTCCGAGAAGAGAAAGTTTTTGGATTCGTAAGCAAAGCCATACAAGAAGGATTGGCTGTTGCGACTCGGATTGACGTCACACGTGGATTATCAACGCTATATCAAAAGCATTCAAAGTAGTAGTCGTTGGGGAGATGGAGAAAGAGAGACAGGAAATGCAAAAAGGGACAAAGTTTTAAGGATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAGTATTCAGAAGGGTTTCTT</pcr_primer_p1>
		<pcr_primer_p2>TACCTCCAATCGTGTATTAACTC</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>ATGAGTATTCAGAAGGGTTTCTTTTTTTTCGTGCCAAATCAGCCTAGTGACGAAGAATGATAAAAGTTTTGTATGGCTTCCTTCCTGGAGCTACGTGTATTTCAGTTCTTGATTGAGAAAAGTTTGAGACTACAAAAACTACAAAAAAGAGGATCGTAAATTATTCGGTTTCATCTAATCAAGAATATCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTA</canonical_amplicon>
		<polymorphic_amplicon>ATGAGTATTCAGAAGGGTTTCTTTTTTTTCGTGCCAAATCAGCCTAGTGACGAAGAATGATAAAAGTTTTGTATGGCTTCCTTCCTGGAGCTACGTGTATTTCAGYTCTTGATTGAGAAAAGTTTGAGACTACAAAAACTACAAAAAAGAGGATCGTAAATTATTCGGTTTCATCTAATCAAGAATATCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3745</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>153782</contig_pos>
        <strand></strand>
        <context>AATCAAGAAT[A/G]RCCGGGAAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACTACAAAAAAGAGGATCGTAAATTATTCGGTTTCATCTAATCAAGAAT</left_flank>
        <right_flank>TCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAAAATTTCAATAACTGGTTCGGGAAAAACTTTGCATTTTTGCTGTTTCTTCTTTGCGACTTCAAACAATCTTTACTCATAAAAACTGATATTCAGCAATTTCAATGTTTTGCATGTTTCAATTTGCTTACCTAAAAATTGAAATCAAACAAAAATGATATGAAGAACGTTGAATAGTTAGCTTCTGAAATTTATTACCTACCAAGAATGGAAAATCCTAAAAATTCAACAATCTTAATTTCTAGCCCCGAAAGAGTAGCAAAATCCAAAAGCAATCACTAAAAAGAGAGAAAAAAGTGGAAGATCTAATAATGAGTATTCAGAAGGGTTTCTTTTTTTTCGTGCCAAATCAGCCTAGTGACGAAGAATGATAAAAGTTTTGTATGGCTTCCTTCCTGGAGCTACGTGTATTTCAGTTCTTGATTGAGAAAAGTTTGAGACTACAAAAACTACAAAAAAGAGGATCGTAAATTATTCGGTTTCATCTAATCAAGAATATCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCCGTCATGTGCACCTTCATCAAAAAATAACTAATTAGACGAAGTATAAATGAAGACAGAGAGAAGGGGGATTTTTGTCCGAGAAGAGAAAGTTTTTGGATTCGTAAGCAAAGCCATACAAGAAGGATTGGCTGTTGCGACTCGGATTGACGTCACACGTGGATTATCAACGCTATATCAAAAGCATTCAAAGTAGTAGTCGTTGGGGAGATGGAGAAAGAGAGACAGGAAATGCAAAAAGGGACAAAGTTTTAAGGATACGTTTCTGGAAGAGAAGTCTAGAAAATGTTGTACCAGGACCAGTGGTGGTGAACAATTGATGTACCTAAATTATATTTCTGT</canonical>
            <polymorphic>TTCAAAATTTCAATAACTGGTTCGGGAAAAACTTTGCATTTTTGCTGTTTCTTCTTTGCGACTTCAAACAATCTTTACTCATAAAAACTGATATTCAGCAATTTCAATGTTTTGCATGTTTCAATTTGCTTACCTAAAAATTGAAATCAAACAAAAATGATATGAAGAACGTTGAATAGTTAGCTTCTGAAATTTATTACCTACCAAGAATGGAAAATCCTAAAAATTCAACAATCTTAATTTCTAGCCCCGAAAGAGTAGCAAAATCCAAAAGCAATCACTAAAAAGAGAGAAAAAAGTGGAAGATCTAATAATGAGTATTCAGAAGGGTTTCTTTTTTTTCGTGCCAAATCAGCCTAGTGACGAAGAATGATAAAAGTTTTGTATGGCTTCCTTCCTGGAGCTACGTGTATTTCAGTTCTTGATTGAGAAAAGTTTGAGACTACAAAAACTACAAAAAAGAGGATCGTAAATTATTCGGTTTCATCTAATCAAGAATRTCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCCGTCATGTGCACCTTCATCAAAAAATAACTAATTAGACGAAGTATAAATGAAGACAGAGAGAAGGGGGATTTTTGTCCGAGAAGAGAAAGTTTTTGGATTCGTAAGCAAAGCCATACAAGAAGGATTGGCTGTTGCGACTCGGATTGACGTCACACGTGGATTATCAACGCTATATCAAAAGCATTCAAAGTAGTAGTCGTTGGGGAGATGGAGAAAGAGAGACAGGAAATGCAAAAAGGGACAAAGTTTTAAGGATACGTTTCTGGAAGAGAAGTCTAGAAAATGTTGTACCAGGACCAGTGGTGGTGAACAATTGATGTACCTAAATTATATTTCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGATTGAGAAAAGTTTGAGAC</pcr_primer_p1>
		<pcr_primer_p2>GGAGGGATTAAGATTTGTTATTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CTTGATTGAGAAAAGTTTGAGACTACAAAAACTACAAAAAAGAGGATCGTAAATTATTCGGTTTCATCTAATCAAGAATATCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCC</canonical_amplicon>
		<polymorphic_amplicon>CTTGATTGAGAAAAGTTTGAGACTACAAAAACTACAAAAAAGAGGATCGTAAATTATTCGGTTTCATCTAATCAAGAATRTCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3746</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>153851</contig_pos>
        <strand></strand>
        <context>AAAATTCAGT[C/A]ATAARAGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGT</left_flank>
        <right_flank>ATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCTTTACTCATAAAAACTGATATTCAGCAATTTCAATGTTTTGCATGTTTCAATTTGCTTACCTAAAAATTGAAATCAAACAAAAATGATATGAAGAACGTTGAATAGTTAGCTTCTGAAATTTATTACCTACCAAGAATGGAAAATCCTAAAAATTCAACAATCTTAATTTCTAGCCCCGAAAGAGTAGCAAAATCCAAAAGCAATCACTAAAAAGAGAGAAAAAAGTGGAAGATCTAATAATGAGTATTCAGAAGGGTTTCTTTTTTTTCGTGCCAAATCAGCCTAGTGACGAAGAATGATAAAAGTTTTGTATGGCTTCCTTCCTGGAGCTACGTGTATTTCAGTTCTTGATTGAGAAAAGTTTGAGACTACAAAAACTACAAAAAAGAGGATCGTAAATTATTCGGTTTCATCTAATCAAGAATATCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCCGTCATGTGCACCTTCATCAAAAAATAACTAATTAGACGAAGTATAAATGAAGACAGAGAGAAGGGGGATTTTTGTCCGAGAAGAGAAAGTTTTTGGATTCGTAAGCAAAGCCATACAAGAAGGATTGGCTGTTGCGACTCGGATTGACGTCACACGTGGATTATCAACGCTATATCAAAAGCATTCAAAGTAGTAGTCGTTGGGGAGATGGAGAAAGAGAGACAGGAAATGCAAAAAGGGACAAAGTTTTAAGGATACGTTTCTGGAAGAGAAGTCTAGAAAATGTTGTACCAGGACCAGTGGTGGTGAACAATTGATGTACCTAAATTATATTTCTGTTACAGGAACTTTAAATTATAGATCCAATCTTGACTGATTTCATTGCAATTTCCACGCAAATGAGAATCA</canonical>
            <polymorphic>AATCTTTACTCATAAAAACTGATATTCAGCAATTTCAATGTTTTGCATGTTTCAATTTGCTTACCTAAAAATTGAAATCAAACAAAAATGATATGAAGAACGTTGAATAGTTAGCTTCTGAAATTTATTACCTACCAAGAATGGAAAATCCTAAAAATTCAACAATCTTAATTTCTAGCCCCGAAAGAGTAGCAAAATCCAAAAGCAATCACTAAAAAGAGAGAAAAAAGTGGAAGATCTAATAATGAGTATTCAGAAGGGTTTCTTTTTTTTCGTGCCAAATCAGCCTAGTGACGAAGAATGATAAAAGTTTTGTATGGCTTCCTTCCTGGAGCTACGTGTATTTCAGTTCTTGATTGAGAAAAGTTTGAGACTACAAAAACTACAAAAAAGAGGATCGTAAATTATTCGGTTTCATCTAATCAAGAATATCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTMATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCCGTCATGTGCACCTTCATCAAAAAATAACTAATTAGACGAAGTATAAATGAAGACAGAGAGAAGGGGGATTTTTGTCCGAGAAGAGAAAGTTTTTGGATTCGTAAGCAAAGCCATACAAGAAGGATTGGCTGTTGCGACTCGGATTGACGTCACACGTGGATTATCAACGCTATATCAAAAGCATTCAAAGTAGTAGTCGTTGGGGAGATGGAGAAAGAGAGACAGGAAATGCAAAAAGGGACAAAGTTTTAAGGATACGTTTCTGGAAGAGAAGTCTAGAAAATGTTGTACCAGGACCAGTGGTGGTGAACAATTGATGTACCTAAATTATATTTCTGTTACAGGAACTTTAAATTATAGATCCAATCTTGACTGATTTCATTGCAATTTCCACGCAAATGAGAATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGAGTTGAGTTAATACACGAT</pcr_primer_p1>
		<pcr_primer_p2>GAATCCAAAAACTTTCTCTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCCGTCATGTGCACCTTCATCAAAAAATAACTAATTAGACGAAGTATAAATGAAGACAGAGAGAAGGGGGATTTTTGTCCGAGAAGAGAAAGTTTTTGGATTC</canonical_amplicon>
		<polymorphic_amplicon>TTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTMATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCCGTCATGTGCACCTTCATCAAAAAATAACTAATTAGACGAAGTATAAATGAAGACAGAGAGAAGGGGGATTTTTGTCCGAGAAGAGAAAGTTTTTGGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3747</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>153856</contig_pos>
        <strand></strand>
        <context>TCAGTMATAA[G/A]AGTTTTAGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAA</left_flank>
        <right_flank>AGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTACTCATAAAAACTGATATTCAGCAATTTCAATGTTTTGCATGTTTCAATTTGCTTACCTAAAAATTGAAATCAAACAAAAATGATATGAAGAACGTTGAATAGTTAGCTTCTGAAATTTATTACCTACCAAGAATGGAAAATCCTAAAAATTCAACAATCTTAATTTCTAGCCCCGAAAGAGTAGCAAAATCCAAAAGCAATCACTAAAAAGAGAGAAAAAAGTGGAAGATCTAATAATGAGTATTCAGAAGGGTTTCTTTTTTTTCGTGCCAAATCAGCCTAGTGACGAAGAATGATAAAAGTTTTGTATGGCTTCCTTCCTGGAGCTACGTGTATTTCAGTTCTTGATTGAGAAAAGTTTGAGACTACAAAAACTACAAAAAAGAGGATCGTAAATTATTCGGTTTCATCTAATCAAGAATATCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCCGTCATGTGCACCTTCATCAAAAAATAACTAATTAGACGAAGTATAAATGAAGACAGAGAGAAGGGGGATTTTTGTCCGAGAAGAGAAAGTTTTTGGATTCGTAAGCAAAGCCATACAAGAAGGATTGGCTGTTGCGACTCGGATTGACGTCACACGTGGATTATCAACGCTATATCAAAAGCATTCAAAGTAGTAGTCGTTGGGGAGATGGAGAAAGAGAGACAGGAAATGCAAAAAGGGACAAAGTTTTAAGGATACGTTTCTGGAAGAGAAGTCTAGAAAATGTTGTACCAGGACCAGTGGTGGTGAACAATTGATGTACCTAAATTATATTTCTGTTACAGGAACTTTAAATTATAGATCCAATCTTGACTGATTTCATTGCAATTTCCACGCAAATGAGAATCATCTTA</canonical>
            <polymorphic>TTACTCATAAAAACTGATATTCAGCAATTTCAATGTTTTGCATGTTTCAATTTGCTTACCTAAAAATTGAAATCAAACAAAAATGATATGAAGAACGTTGAATAGTTAGCTTCTGAAATTTATTACCTACCAAGAATGGAAAATCCTAAAAATTCAACAATCTTAATTTCTAGCCCCGAAAGAGTAGCAAAATCCAAAAGCAATCACTAAAAAGAGAGAAAAAAGTGGAAGATCTAATAATGAGTATTCAGAAGGGTTTCTTTTTTTTCGTGCCAAATCAGCCTAGTGACGAAGAATGATAAAAGTTTTGTATGGCTTCCTTCCTGGAGCTACGTGTATTTCAGTTCTTGATTGAGAAAAGTTTGAGACTACAAAAACTACAAAAAAGAGGATCGTAAATTATTCGGTTTCATCTAATCAAGAATATCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAARAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCCGTCATGTGCACCTTCATCAAAAAATAACTAATTAGACGAAGTATAAATGAAGACAGAGAGAAGGGGGATTTTTGTCCGAGAAGAGAAAGTTTTTGGATTCGTAAGCAAAGCCATACAAGAAGGATTGGCTGTTGCGACTCGGATTGACGTCACACGTGGATTATCAACGCTATATCAAAAGCATTCAAAGTAGTAGTCGTTGGGGAGATGGAGAAAGAGAGACAGGAAATGCAAAAAGGGACAAAGTTTTAAGGATACGTTTCTGGAAGAGAAGTCTAGAAAATGTTGTACCAGGACCAGTGGTGGTGAACAATTGATGTACCTAAATTATATTTCTGTTACAGGAACTTTAAATTATAGATCCAATCTTGACTGATTTCATTGCAATTTCCACGCAAATGAGAATCATCTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGAGTTGAGTTAATACACGAT</pcr_primer_p1>
		<pcr_primer_p2>GAATCCAAAAACTTTCTCTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCCGTCATGTGCACCTTCATCAAAAAATAACTAATTAGACGAAGTATAAATGAAGACAGAGAGAAGGGGGATTTTTGTCCGAGAAGAGAAAGTTTTTGGATTC</canonical_amplicon>
		<polymorphic_amplicon>TTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAARAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCCGTCATGTGCACCTTCATCAAAAAATAACTAATTAGACGAAGTATAAATGAAGACAGAGAGAAGGGGGATTTTTGTCCGAGAAGAGAAAGTTTTTGGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3748</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>153897</contig_pos>
        <strand>+</strand>
        <context>TCTAAATAAA[A/G]AAAAGTGCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAA</left_flank>
        <right_flank>AAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCCGTCA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTTTCAATTTGCTTACCTAAAAATTGAAATCAAACAAAAATGATATGAAGAACGTTGAATAGTTAGCTTCTGAAATTTATTACCTACCAAGAATGGAAAATCCTAAAAATTCAACAATCTTAATTTCTAGCCCCGAAAGAGTAGCAAAATCCAAAAGCAATCACTAAAAAGAGAGAAAAAAGTGGAAGATCTAATAATGAGTATTCAGAAGGGTTTCTTTTTTTTCGTGCCAAATCAGCCTAGTGACGAAGAATGATAAAAGTTTTGTATGGCTTCCTTCCTGGAGCTACGTGTATTTCAGTTCTTGATTGAGAAAAGTTTGAGACTACAAAAACTACAAAAAAGAGGATCGTAAATTATTCGGTTTCATCTAATCAAGAATATCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCCGTCATGTGCACCTTCATCAAAAAATAACTAATTAGACGAAGTATAAATGAAGACAGAGAGAAGGGGGATTTTTGTCCGAGAAGAGAAAGTTTTTGGATTCGTAAGCAAAGCCATACAAGAAGGATTGGCTGTTGCGACTCGGATTGACGTCACACGTGGATTATCAACGCTATATCAAAAGCATTCAAAGTAGTAGTCGTTGGGGAGATGGAGAAAGAGAGACAGGAAATGCAAAAAGGGACAAAGTTTTAAGGATACGTTTCTGGAAGAGAAGTCTAGAAAATGTTGTACCAGGACCAGTGGTGGTGAACAATTGATGTACCTAAATTATATTTCTGTTACAGGAACTTTAAATTATAGATCCAATCTTGACTGATTTCATTGCAATTTCCACGCAAATGAGAATCATCTTACAAAAAGCAGAAAAGCCCAAAAGACAAATTGTCAGTGTAAA</canonical>
            <polymorphic>ATGTTTCAATTTGCTTACCTAAAAATTGAAATCAAACAAAAATGATATGAAGAACGTTGAATAGTTAGCTTCTGAAATTTATTACCTACCAAGAATGGAAAATCCTAAAAATTCAACAATCTTAATTTCTAGCCCCGAAAGAGTAGCAAAATCCAAAAGCAATCACTAAAAAGAGAGAAAAAAGTGGAAGATCTAATAATGAGTATTCAGAAGGGTTTCTTTTTTTTCGTGCCAAATCAGCCTAGTGACGAAGAATGATAAAAGTTTTGTATGGCTTCCTTCCTGGAGCTACGTGTATTTCAGTTCTTGATTGAGAAAAGTTTGAGACTACAAAAACTACAAAAAAGAGGATCGTAAATTATTCGGTTTCATCTAATCAAGAATATCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAARAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCCGTCATGTGCACCTTCATCAAAAAATAACTAATTAGACGAAGTATAAATGAAGACAGAGAGAAGGGGGATTTTTGTCCGAGAAGAGAAAGTTTTTGGATTCGTAAGCAAAGCCATACAAGAAGGATTGGCTGTTGCGACTCGGATTGACGTCACACGTGGATTATCAACGCTATATCAAAAGCATTCAAAGTAGTAGTCGTTGGGGAGATGGAGAAAGAGAGACAGGAAATGCAAAAAGGGACAAAGTTTTAAGGATACGTTTCTGGAAGAGAAGTCTAGAAAATGTTGTACCAGGACCAGTGGTGGTGAACAATTGATGTACCTAAATTATATTTCTGTTACAGGAACTTTAAATTATAGATCCAATCTTGACTGATTTCATTGCAATTTCCACGCAAATGAGAATCATCTTACAAAAAGCAGAAAAGCCCAAAAGACAAATTGTCAGTGTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGAGTTGAGTTAATACACGAT</pcr_primer_p1>
		<pcr_primer_p2>GAATCCAAAAACTTTCTCTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCCGTCATGTGCACCTTCATCAAAAAATAACTAATTAGACGAAGTATAAATGAAGACAGAGAGAAGGGGGATTTTTGTCCGAGAAGAGAAAGTTTTTGGATTC</canonical_amplicon>
		<polymorphic_amplicon>TTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAARAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCCGTCATGTGCACCTTCATCAAAAAATAACTAATTAGACGAAGTATAAATGAAGACAGAGAGAAGGGGGATTTTTGTCCGAGAAGAGAAAGTTTTTGGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3749</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>174771</contig_pos>
        <strand>+</strand>
        <context>GAGAATCCAG[G/T]CGACCTTAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACAAAATATTTTTAATGAAATCAGAATTTTTCAAAATTTAGAGAATCCAG</left_flank>
        <right_flank>CGACCTTAAATGGGAATGCATCTTAAAATTTCTCAAAGTTTCTAATTTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAGGGCTCAAAACAAAAGTTTTTGGAAAGTGATGTGAGTTTTGGTTGTTTGGTGTTTAGCATTTTGAAGATAATATTTCGGTTCCATATAAATCAGAAAAGTTGTTTTTTTCGAATCAAATCTGATTACTCAGACAACATCTGAAAACTGTTTTCATGAAATTTCCAGTAGATTATACAATTTTTTGTTAGATAAAAAACTTTGCATCGAGACTCATTGAGAGAATATTTGAGCTAGTACTGAACAGATTCGTGGAATCAAAATGACCGTAAACCAGAAAATCTAGAATTCCGAAACTGCAGATCAGTATGTTTATTACATGAACAGTTCAAAAAATACTGCTTCCTTGCATAGTTTTAAAATAAGGCAAACCTGACTTATTATTTTTTTAATTCCAGATTCACTAAAAATAAAAGTCATGAAACGGAATATCCATCGAATCTAGAAACAAAATATTTTTAATGAAATCAGAATTTTTCAAAATTTAGAGAATCCAGGCGACCTTAAATGGGAATGCATCTTAAAATTTCTCAAAGTTTCTAATTTTAATCTTCAAATTTGTAGTTTTACGCATACTTGCAAAATTTCGGGCCGTTGTTTGTACAATTAAAAAATGAGAGTATTCTGTAACTAGCAAATTTTTAGGCAAATTTAATTCTGATAAGATAGGTAAACGAAAAAGAAATGCCGAAATAACACTGCCATTTTAGCACGGATCATCTCCCTTTGTTGAATTCATACAAAAAATTTGCCAATTACAGAAATGAAGCCTTAATTTTGTTCAGTAAACTCTGAAAATTTCAGAAAAATCGAAAAATTCTGAAAAACTTGTTTATAACTTCAAAGTTTAGTATATTTCGCTGAAAAACAGTCTAAAAAAGGATATATTTTTGTTCGTTTTAACATGAAACAAGTATTAAAGATGATTTATTAAATAGATTTTACTATTTAACTGTATCAGCAAAAAATCTAAAATTGCGGCTCTCGAAAATATACTT</canonical>
            <polymorphic>TGAAGGGCTCAAAACAAAAGTTTTTGGAAAGTGATGTGAGTTTTGGTTGTTTGGTGTTTAGCATTTTGAAGATAATATTTCGGTTCCATATAAATCAGAAAAGTTGTTTTTTTCGAATCAAATCTGATTACTCAGACAACATCTGAAAACTGTTTTCATGAAATTTCCAGTAGATTATACAATTTTTTGTTAGATAAAAAACTTTGCATCGAGACTCATTGAGAGAATATTTGAGCTAGTACTGAACAGATTCGTGGAATCAAAATGACCGTAAACCAGAAAATCTAGAATTCCGAAACTGCAGATCAGTATGTTTATTACATGAACAGTTCAAAAAATACTGCTTCCTTGCATAGTTTTAAAATAAGGCAAACCTGACTTATTATTTTTTTAATTCCAGATTCACTAAAAATAAAAGTCATGAAACGGAATATCCATCGAATCTAGAAACAAAATATTTTTAATGAAATCAGAATTTTTCAAAATTTAGAGAATCCAGKCGACCTTAAATGGGAATGCATCTTAAAATTTCTCAAAGTTTCTAATTTTAATCTTCAAATTTGTAGTTTTACGCATACTTGCAAAATTTCGGGCCGTTGTTTGTACAATTAAAAAATGAGAGTATTCTGTAACTAGCAAATTTTTAGGCAAATTTAATTCTGATAAGATAGGTAAACGAAAAAGAAATGCCGAAATAACACTGCCATTTTAGCACGGATCATCTCCCTTTGTTGAATTCATACAAAAAATTTGCCAATTACAGAAATGAAGCCTTAATTTTGTTCAGTAAACTCTGAAAATTTCAGAAAAATCGAAAAATTCTGAAAAACTTGTTTATAACTTCAAAGTTTAGTATATTTCGCTGAAAAACAGTCTAAAAAAGGATATATTTTTGTTCGTTTTAACATGAAACAAGTATTAAAGATGATTTATTAAATAGATTTTACTATTTAACTGTATCAGCAAAAAATCTAAAATTGCGGCTCTCGAAAATATACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAAGTCATGAAACGGAATATC</pcr_primer_p1>
		<pcr_primer_p2>TCAGAATTAAATTTGCCTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAAAAGTCATGAAACGGAATATCCATCGAATCTAGAAACAAAATATTTTTAATGAAATCAGAATTTTTCAAAATTTAGAGAATCCAGGCGACCTTAAATGGGAATGCATCTTAAAATTTCTCAAAGTTTCTAATTTTAATCTTCAAATTTGTAGTTTTACGCATACTTGCAAAATTTCGGGCCGTTGTTTGTACAATTAAAAAATGAGAGTATTCTGTAACTAGCAAATTTTTAGGCAAATTTAATTCTGA</canonical_amplicon>
		<polymorphic_amplicon>TAAAAGTCATGAAACGGAATATCCATCGAATCTAGAAACAAAATATTTTTAATGAAATCAGAATTTTTCAAAATTTAGAGAATCCAGKCGACCTTAAATGGGAATGCATCTTAAAATTTCTCAAAGTTTCTAATTTTAATCTTCAAATTTGTAGTTTTACGCATACTTGCAAAATTTCGGGCCGTTGTTTGTACAATTAAAAAATGAGAGTATTCTGTAACTAGCAAATTTTTAGGCAAATTTAATTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3750</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>174533</contig_pos>
        <strand>+</strand>
        <context>TCGTGGAATC[A/C]AAATGACCGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGACTCATTGAGAGAATATTTGAGCTAGTACTGAACAGATTCGTGGAATC</left_flank>
        <right_flank>AAATGACCGTAAACCAGAAAATCTAGAATTCCGAAACTGCAGATCAGTAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTTTTTTTGCAAAAAAAAAGTTTCATAAAAACTAGGTCCAACTTATTCACCTAATGCGCATCGAACCAAGCATAGCACCATGAAGAAACATTTCATCCAGAACATAATGATAGGGACATTCTTGTGAAAAATATAAGTAATGTCTCTTGTGAAAAATATAAGTAATGAAAACTTTCGAAGGTTCTCAATGTATTAACCGGAATTTTCGAAGTGAGAAACTATAAATTAAGTAAGTTTGAAGGGCTCAAAACAAAAGTTTTTGGAAAGTGATGTGAGTTTTGGTTGTTTGGTGTTTAGCATTTTGAAGATAATATTTCGGTTCCATATAAATCAGAAAAGTTGTTTTTTTCGAATCAAATCTGATTACTCAGACAACATCTGAAAACTGTTTTCATGAAATTTCCAGTAGATTATACAATTTTTTGTTAGATAAAAAACTTTGCATCGAGACTCATTGAGAGAATATTTGAGCTAGTACTGAACAGATTCGTGGAATCAAAATGACCGTAAACCAGAAAATCTAGAATTCCGAAACTGCAGATCAGTATGTTTATTACATGAACAGTTCAAAAAATACTGCTTCCTTGCATAGTTTTAAAATAAGGCAAACCTGACTTATTATTTTTTTAATTCCAGATTCACTAAAAATAAAAGTCATGAAACGGAATATCCATCGAATCTAGAAACAAAATATTTTTAATGAAATCAGAATTTTTCAAAATTTAGAGAATCCAGGCGACCTTAAATGGGAATGCATCTTAAAATTTCTCAAAGTTTCTAATTTTAATCTTCAAATTTGTAGTTTTACGCATACTTGCAAAATTTCGGGCCGTTGTTTGTACAATTAAAAAATGAGAGTATTCTGTAACTAGCAAATTTTTAGGCAAATTTAATTCTGATAAGATAGGTAAACGAAAAAGAAATGCCGAAATAACACTGCCATTTTAGCACGGATCATCTCCCTTTGTTGAATTCATACAAAAAATTTGCCAATTACA</canonical>
            <polymorphic>TCGTTTTTTTGCAAAAAAAAAGTTTCATAAAAACTAGGTCCAACTTATTCACCTAATGCGCATCGAACCAAGCATAGCACCATGAAGAAACATTTCATCCAGAACATAATGATAGGGACATTCTTGTGAAAAATATAAGTAATGTCTCTTGTGAAAAATATAAGTAATGAAAACTTTCGAAGGTTCTCAATGTATTAACCGGAATTTTCGAAGTGAGAAACTATAAATTAAGTAAGTTTGAAGGGCTCAAAACAAAAGTTTTTGGAAAGTGATGTGAGTTTTGGTTGTTTGGTGTTTAGCATTTTGAAGATAATATTTCGGTTCCATATAAATCAGAAAAGTTGTTTTTTTCGAATCAAATCTGATTACTCAGACAACATCTGAAAACTGTTTTCATGAAATTTCCAGTAGATTATACAATTTTTTGTTAGATAAAAAACTTTGCATCGAGACTCATTGAGAGAATATTTGAGCTAGTACTGAACAGATTCGTGGAATCMAAATGACCGTAAACCAGAAAATCTAGAATTCCGAAACTGCAGATCAGTATGTTTATTACATGAACAGTTCAAAAAATACTGCTTCCTTGCATAGTTTTAAAATAAGGCAAACCTGACTTATTATTTTTTTAATTCCAGATTCACTAAAAATAAAAGTCATGAAACGGAATATCCATCGAATCTAGAAACAAAATATTTTTAATGAAATCAGAATTTTTCAAAATTTAGAGAATCCAGGCGACCTTAAATGGGAATGCATCTTAAAATTTCTCAAAGTTTCTAATTTTAATCTTCAAATTTGTAGTTTTACGCATACTTGCAAAATTTCGGGCCGTTGTTTGTACAATTAAAAAATGAGAGTATTCTGTAACTAGCAAATTTTTAGGCAAATTTAATTCTGATAAGATAGGTAAACGAAAAAGAAATGCCGAAATAACACTGCCATTTTAGCACGGATCATCTCCCTTTGTTGAATTCATACAAAAAATTTGCCAATTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAGACAACATCTGAAAACTGT</pcr_primer_p1>
		<pcr_primer_p2>TAAGTCAGGTTTGCCTTATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTCAGACAACATCTGAAAACTGTTTTCATGAAATTTCCAGTAGATTATACAATTTTTTGTTAGATAAAAAACTTTGCATCGAGACTCATTGAGAGAATATTTGAGCTAGTACTGAACAGATTCGTGGAATCAAAATGACCGTAAACCAGAAAATCTAGAATTCCGAAACTGCAGATCAGTATGTTTATTACATGAACAGTTCAAAAAATACTGCTTCCTTGCATAGTTTTAAAATAAGGCAAACCTGACTTA</canonical_amplicon>
		<polymorphic_amplicon>CTCAGACAACATCTGAAAACTGTTTTCATGAAATTTCCAGTAGATTATACAATTTTTTGTTAGATAAAAAACTTTGCATCGAGACTCATTGAGAGAATATTTGAGCTAGTACTGAACAGATTCGTGGAATCMAAATGACCGTAAACCAGAAAATCTAGAATTCCGAAACTGCAGATCAGTATGTTTATTACATGAACAGTTCAAAAAATACTGCTTCCTTGCATAGTTTTAAAATAAGGCAAACCTGACTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3751</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>208701</contig_pos>
        <strand>+</strand>
        <context>TTCTGACAGT[C/T]GCCAGTTCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCGCAACGATAACAAATGCATGTTGGACGTCCCTTTCGTTTCTGACAGT</left_flank>
        <right_flank>GCCAGTTCCGCAATTCTGGAAATAATTGTTTTAGAAAAACTTGCACGACC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTGTAGATTTCGGTTAGTGTTTCTGATTTTTAAAAATAAGTCGAGCATTTGATTCTGAATTTTTTTCAGAAATAGCGAAAAATTCCATAGATTTCAAAAACCTTTAGAGTTTCGATAATTTTATCTGATTAGAGCTATATATTCAAGACAACAGCGTCGCAAAATATAATTTTTCTTTGCTGCTCCGAAACTCTCTGTTTCACATTTTGGTTAAATTAACGAATTGACTTGATTTTTTTGGTAAAGAGCTGTCAATATAAGCCATTCAAAAGACCCAAATATCCCTTAACAAATGTAGCTAATGGAAACCCCCAATTCTCCGTTTCCTATTTTTGTTAAATCAAAAAGTTGACTTGATTTTATTGATAATAGACGTCCAATTGAGTCACTGAAACATCCCAATTATCCCTTAACAAAAGCAGCCAATGGAATATTGCCTCCTCCTTTTGCGCAACGATAACAAATGCATGTTGGACGTCCCTTTCGTTTCTGACAGTTGCCAGTTCCGCAATTCTGGAAATAATTGTTTTAGAAAAACTTGCACGACCAAATTGAATTTTACAAACATCAAATCTAGAAGTTCTGAAACCGCAATATCTCACCTGCATACTACAACTTGTAATACAAAGTCCATGAGCAGCTTTGCTCAAAATTGGAACATCCATTCTGGCGCACGAGCTCAAGTCAATGGCTACAGTGAGAGAAGTGAACACCAACAAAGAAATCAAAAGATTATGAAAAATCATGATATTCTCATCTCTCTGAAACTTGTCAGCTGGGTTTTTATAGGGTTTCTGAAGCGGTTTTATAAATTTGTTTGTGTTCGGAAGATTTTTTTGGGGGAAAAGTTTTTATAGTTTCCAAAAAGTCAGAAGATCAGAACTCCTCTATGTGGAATTTGGTTTTCCATTTGTTAGACGTTTTTTATGTTTTTATTTCTGGAACTTGGCATTGCGATTGCAGAATCATAAGCTTTTAGTCATACATAATTTTCAGCT</canonical>
            <polymorphic>GTTTGTAGATTTCGGTTAGTGTTTCTGATTTTTAAAAATAAGTCGAGCATTTGATTCTGAATTTTTTTCAGAAATAGCGAAAAATTCCATAGATTTCAAAAACCTTTAGAGTTTCGATAATTTTATCTGATTAGAGCTATATATTCAAGACAACAGCGTCGCAAAATATAATTTTTCTTTGCTGCTCCGAAACTCTCTGTTTCACATTTTGGTTAAATTAACGAATTGACTTGATTTTTTTGGTAAAGAGCTGTCAATATAAGCCATTCAAAAGACCCAAATATCCCTTAACAAATGTAGCTAATGGAAACCCCCAATTCTCCGTTTCCTATTTTTGTTAAATCAAAAAGTTGACTTGATTTTATTGATAATAGACGTCCAATTGAGTCACTGAAACATCCCAATTATCCCTTAACAAAAGCAGCCAATGGAATATTGCCTCCTCCTTTTGCGCAACGATAACAAATGCATGTTGGACGTCCCTTTCGTTTCTGACAGTYGCCAGTTCCGCAATTCTGGAAATAATTGTTTTAGAAAAACTTGCACGACCAAATTGAATTTTACAAACATCAAATCTAGAAGTTCTGAAACCGCAATATCTCACCTGCATACTACAACTTGTAATACAAAGTCCATGAGCAGCTTTGCTCAAAATTGGAACATCCATTCTGGCGCACGAGCTCAAGTCAATGGCTACAGTGAGAGAAGTGAACACCAACAAAGAAATCAAAAGATTATGAAAAATCATGATATTCTCATCTCTCTGAAACTTGTCAGCTGGGTTTTTATAGGGTTTCTGAAGCGGTTTTATAAATTTGTTTGTGTTCGGAAGATTTTTTTGGGGGAAAAGTTTTTATAGTTTCCAAAAAGTCAGAAGATCAGAACTCCTCTATGTGGAATTTGGTTTTCCATTTGTTAGACGTTTTTTATGTTTTTATTTCTGGAACTTGGCATTGCGATTGCAGAATCATAAGCTTTTAGTCATACATAATTTTCAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATAGACGTCCAATTGAGTCAC</pcr_primer_p1>
		<pcr_primer_p2>TGTAGTATGCAGGTGAGATATTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TAATAGACGTCCAATTGAGTCACTGAAACATCCCAATTATCCCTTAACAAAAGCAGCCAATGGAATATTGCCTCCTCCTTTTGCGCAACGATAACAAATGCATGTTGGACGTCCCTTTCGTTTCTGACAGTTGCCAGTTCCGCAATTCTGGAAATAATTGTTTTAGAAAAACTTGCACGACCAAATTGAATTTTACAAACATCAAATCTAGAAGTTCTGAAACCGCAATATCTCACCTGCATACTACA</canonical_amplicon>
		<polymorphic_amplicon>TAATAGACGTCCAATTGAGTCACTGAAACATCCCAATTATCCCTTAACAAAAGCAGCCAATGGAATATTGCCTCCTCCTTTTGCGCAACGATAACAAATGCATGTTGGACGTCCCTTTCGTTTCTGACAGTYGCCAGTTCCGCAATTCTGGAAATAATTGTTTTAGAAAAACTTGCACGACCAAATTGAATTTTACAAACATCAAATCTAGAAGTTCTGAAACCGCAATATCTCACCTGCATACTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3752</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>209112</contig_pos>
        <strand>+</strand>
        <context>TTGGTTTTCC[A/G]TTTGTTAGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCAAAAAGTCAGAAGATCAGAACTCCTCTATGTGGAATTTGGTTTTCC</left_flank>
        <right_flank>TTTGTTAGACGTTTTTTATGTTTTTATTTCTGGAACTTGGCATTGCGATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAACAAAAGCAGCCAATGGAATATTGCCTCCTCCTTTTGCGCAACGATAACAAATGCATGTTGGACGTCCCTTTCGTTTCTGACAGTTGCCAGTTCCGCAATTCTGGAAATAATTGTTTTAGAAAAACTTGCACGACCAAATTGAATTTTACAAACATCAAATCTAGAAGTTCTGAAACCGCAATATCTCACCTGCATACTACAACTTGTAATACAAAGTCCATGAGCAGCTTTGCTCAAAATTGGAACATCCATTCTGGCGCACGAGCTCAAGTCAATGGCTACAGTGAGAGAAGTGAACACCAACAAAGAAATCAAAAGATTATGAAAAATCATGATATTCTCATCTCTCTGAAACTTGTCAGCTGGGTTTTTATAGGGTTTCTGAAGCGGTTTTATAAATTTGTTTGTGTTCGGAAGATTTTTTTGGGGGAAAAGTTTTTATAGTTTCCAAAAAGTCAGAAGATCAGAACTCCTCTATGTGGAATTTGGTTTTCCATTTGTTAGACGTTTTTTATGTTTTTATTTCTGGAACTTGGCATTGCGATTGCAGAATCATAAGCTTTTAGTCATACATAATTTTCAGCTGCTTCTTGAAGACAAAATTAACGGCAACAAAGATGAAAAATTCTTGAGATAGGGCTCAAAATTCGGGTCCAAAATTCAATTTGAAGGAGGAGACAGTATTCATTTTTGCGAGACTCTGTACAGGGATCGATGTAACGGTTTTAAAGGTTGCGACAGCGTAGCTGATAGTGAGTCGGTAGCGACGCAGCACCTTCAATATTTTCCCTGCAAGTTCAACTCCTCGAGGGGAATATGAACATAATTTATTATATATCTTTTGAAACTAGAAAATTTTACTTTTCAATATTTTGAAAATTTGGATCACTTCCAGGAACGTTCCGCCTAATCAGATGACGAATTTTTCCAACAAACAAAGCCGGAACTTATCACCTGCCTCGAGTCTGGATCTAACACTTTTGAGTCTCATGCCAA</canonical>
            <polymorphic>TTAACAAAAGCAGCCAATGGAATATTGCCTCCTCCTTTTGCGCAACGATAACAAATGCATGTTGGACGTCCCTTTCGTTTCTGACAGTTGCCAGTTCCGCAATTCTGGAAATAATTGTTTTAGAAAAACTTGCACGACCAAATTGAATTTTACAAACATCAAATCTAGAAGTTCTGAAACCGCAATATCTCACCTGCATACTACAACTTGTAATACAAAGTCCATGAGCAGCTTTGCTCAAAATTGGAACATCCATTCTGGCGCACGAGCTCAAGTCAATGGCTACAGTGAGAGAAGTGAACACCAACAAAGAAATCAAAAGATTATGAAAAATCATGATATTCTCATCTCTCTGAAACTTGTCAGCTGGGTTTTTATAGGGTTTCTGAAGCGGTTTTATAAATTTGTTTGTGTTCGGAAGATTTTTTTGGGGGAAAAGTTTTTATAGTTTCCAAAAAGTCAGAAGATCAGAACTCCTCTATGTGGAATTTGGTTTTCCRTTTGTTAGACGTTTTTTATGTTTTTATTTCTGGAACTTGGCATTGCGATTGCAGAATCATAAGCTTTTAGTCATACATAATTTTCAGCTGCTTCTTGAAGACAAAATTAACGGCAACAAAGATGAAAAATTCTTGAGATAGGGCTCAAAATTCGGGTCCAAAATTCAATTTGAAGGAGGAGACAGTATTCATTTTTGCGAGACTCTGTACAGGGATCGATGTAACGGTTTTAAAGGTTGCGACAGCGTAGCTGATAGTGAGTCGGTAGCGACGCAGCACCTTCAATATTTTCCCTGCAAGTTCAACTCCTCGAGGGGAATATGAACATAATTTATTATATATCTTTTGAAACTAGAAAATTTTACTTTTCAATATTTTGAAAATTTGGATCACTTCCAGGAACGTTCCGCCTAATCAGATGACGAATTTTTCCAACAAACAAAGCCGGAACTTATCACCTGCCTCGAGTCTGGATCTAACACTTTTGAGTCTCATGCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTCATCTCTCTGAAACTTGTC</pcr_primer_p1>
		<pcr_primer_p2>GCAGCTGAAAATTATGTATGACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTCATCTCTCTGAAACTTGTCAGCTGGGTTTTTATAGGGTTTCTGAAGCGGTTTTATAAATTTGTTTGTGTTCGGAAGATTTTTTTGGGGGAAAAGTTTTTATAGTTTCCAAAAAGTCAGAAGATCAGAACTCCTCTATGTGGAATTTGGTTTTCCATTTGTTAGACGTTTTTTATGTTTTTATTTCTGGAACTTGGCATTGCGATTGCAGAATCATAAGCTTTTAGTCATACATAATTTTCAGCTGC</canonical_amplicon>
		<polymorphic_amplicon>TTCTCATCTCTCTGAAACTTGTCAGCTGGGTTTTTATAGGGTTTCTGAAGCGGTTTTATAAATTTGTTTGTGTTCGGAAGATTTTTTTGGGGGAAAAGTTTTTATAGTTTCCAAAAAGTCAGAAGATCAGAACTCCTCTATGTGGAATTTGGTTTTCCRTTTGTTAGACGTTTTTTATGTTTTTATTTCTGGAACTTGGCATTGCGATTGCAGAATCATAAGCTTTTAGTCATACATAATTTTCAGCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3772</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>209427</contig_pos>
        <strand></strand>
        <context>actcctcgag[G/A]ggaatatgaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTAGCGACGCAGCACCTTCAATATTTTCCCTGCAAGTTCAACTCCTCGAG</left_flank>
        <right_flank>GGAATATGAACATAATTTATTATATATCTTTTGAAACTAGAAAATTTTAC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAAGATTATGAAAAATCATGATATTCTCATCTCTCTGAAACTTGTCAGCTGGGTTTTTATAGGGTTTCTGAAGCGGTTTTATAAATTTGTTTGTGTTCGGAAGATTTTTTTGGGGGAAAAGTTTTTATAGTTTCCAAAAAGTCAGAAGATCAGAACTCCTCTATGTGGAATTTGGTTTTCCATTTGTTAGACGTTTTTTATGTTTTTATTTCTGGAACTTGGCATTGCGATTGCAGAATCATAAGCTTTTAGTCATACATAATTTTCAGCTGCTTCTTGAAGACAAAATTAACGGCAACAAAGATGAAAAATTCTTGAGATAGGGCTCAAAATTCGGGTCCAAAATTCAATTTGAAGGAGGAGACAGTATTCATTTTTGCGAGACTCTGTACAGGGATCGATGTAACGGTTTTAAAGGTTGCGACAGCGTAGCTGATAGTGAGTCGGTAGCGACGCAGCACCTTCAATATTTTCCCTGCAAGTTCAACTCCTCGAGGGGAATATGAACATAATTTATTATATATCTTTTGAAACTAGAAAATTTTACTTTTCAATATTTTGAAAATTTGGATCACTTCCAGGAACGTTCCGCCTAATCAGATGACGAATTTTTCCAACAAACAAAGCCGGAACTTATCACCTGCCTCGAGTCTGGATCTAACACTTTTGAGTCTCATGCCAACTCATTCTTTATACTTTTCCCCAATTCCAATTCTCCTAAAATGACATACTACAATTCTTCCCCATATGCAGGAACCGTTCATTTCGATTTATCCTATATCAATTATCAATTTGATTGGAAACAATTTCCCACAATTTTCGCTACTCTTCCATGGGTTTACATGATTCCAAGTTTTATAGTCATTTGTAAAATACTTTATGTTTACCTTGATTCGAATTGGAAGAAATCGGAACCGGGGAAAAATCAACATGTGTTTCTGATCATCTCATTATCACAACTTACTTGTTTTGCATTGTTTTTCTCGGATTTTTGGAT</canonical>
            <polymorphic>TCAAAAGATTATGAAAAATCATGATATTCTCATCTCTCTGAAACTTGTCAGCTGGGTTTTTATAGGGTTTCTGAAGCGGTTTTATAAATTTGTTTGTGTTCGGAAGATTTTTTTGGGGGAAAAGTTTTTATAGTTTCCAAAAAGTCAGAAGATCAGAACTCCTCTATGTGGAATTTGGTTTTCCATTTGTTAGACGTTTTTTATGTTTTTATTTCTGGAACTTGGCATTGCGATTGCAGAATCATAAGCTTTTAGTCATACATAATTTTCAGCTGCTTCTTGAAGACAAAATTAACGGCAACAAAGATGAAAAATTCTTGAGATAGGGCTCAAAATTCGGGTCCAAAATTCAATTTGAAGGAGGAGACAGTATTCATTTTTGCGAGACTCTGTACAGGGATCGATGTAACGGTTTTAAAGGTTGCGACAGCGTAGCTGATAGTGAGTCGGTAGCGACGCAGCACCTTCAATATTTTCCCTGCAAGTTCAACTCCTCGAGRGGAATATGAACATAATTTATTATATATCTTTTGAAACTAGAAAATTTTACTTTTCAATATTTTGAAAATTTGGATCACTTCCAGGAACGTTCCGCCTAATCAGATGACGAATTTTTCCAACAAACAAAGCCGGAACTTATCACCTGCCTCGAGTCTGGATCTAACACTTTTGAGTCTCATGCCAACTCATTCTTTATACTTTTCCCCAATTCCAATTCTCCTAAAATGACATACTACAATTCTTCCCCATATGCAGGAACCGTTCATTTCGATTTATCCTATATCAATTATCAATTTGATTGGAAACAATTTCCCACAATTTTCGCTACTCTTCCATGGGTTTACATGATTCCAAGTTTTATAGTCATTTGTAAAATACTTTATGTTTACCTTGATTCGAATTGGAAGAAATCGGAACCGGGGAAAAATCAACATGTGTTTCTGATCATCTCATTATCACAACTTACTTGTTTTGCATTGTTTTTCTCGGATTTTTGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGCGTAGCTGATAGTGAGT</pcr_primer_p1>
		<pcr_primer_p2>TGAGACTCAAAAGTGTTAGATCC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ACAGCGTAGCTGATAGTGAGTCGGTAGCGACGCAGCACCTTCAATATTTTCCCTGCAAGTTCAACTCCTCGAGGGGAATATGAACATAATTTATTATATATCTTTTGAAACTAGAAAATTTTACTTTTCAATATTTTGAAAATTTGGATCACTTCCAGGAACGTTCCGCCTAATCAGATGACGAATTTTTCCAACAAACAAAGCCGGAACTTATCACCTGCCTCGAGTCTGGATCTAACACTTTTGAGTCTCA</canonical_amplicon>
		<polymorphic_amplicon>ACAGCGTAGCTGATAGTGAGTCGGTAGCGACGCAGCACCTTCAATATTTTCCCTGCAAGTTCAACTCCTCGAGRGGAATATGAACATAATTTATTATATATCTTTTGAAACTAGAAAATTTTACTTTTCAATATTTTGAAAATTTGGATCACTTCCAGGAACGTTCCGCCTAATCAGATGACGAATTTTTCCAACAAACAAAGCCGGAACTTATCACCTGCCTCGAGTCTGGATCTAACACTTTTGAGTCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3789</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>210816</contig_pos>
        <strand>+</strand>
        <context>AAAATTTCAG[A/G]AATTCTTCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACTGTTTCAATACTTTCAGATTTTTTTCTAAAATACACCAAAATTTCAG</left_flank>
        <right_flank>AATTCTTCAGTTAGAAGAAACATTGAACCGAAAAAAATCGACAAGAATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATGACCATGAGAACATAAACTTTTGTCTAACTCGGCTTTCGGCTTGTAACTTCTGGTCAGAAGTTGAGGTGTTGCGCTTTTGAACTGATACTGGCCAAGTTCTAGTAAGAACTGTATAGCATTTCCGTTTTGTTTCCTGTAGTTGAGTTAATCATTGTAACTATTAGGTTGGTGCATAAGCTTCTTTCGATTCTGACTAATCTTTCGATCACGCTTCTCTCAATAGCAGAGTGGGATGGCTCAATGAAAGTAACGTTCATGAGCATCGATAGTTGTCAGCCAACGCTCCTAAATTTTCTCGATTCCATCGGCCTAGAACGAGGAAAGCTGTGAATGAAAAAGTGGGTCAACTCCTATCTGGTGTCAATAGTCCTGATGAATCTTCAAAGTAGAGCATTCAAAATTGAAAGAAACTTATGCACCAACCTACTTTTTTTTTCGAAAGAAAACTGTTTCAATACTTTCAGATTTTTTTCTAAAATACACCAAAATTTCAGAAATTCTTCAGTTAGAAGAAACATTGAACCGAAAAAAATCGACAAGAATTTTTGATAGTTTCCCAATTCGTTTGCTTTAGGCAACTGTTAGAAAGTGATAATTAAAAAAAAACTATTCCCACACACTGATATTTTCATGTTTGTATAAATTCTAACTACTAAATAAAGCAGTTTTCAAATGACTTAACCAAAATTAGTCCATTATAACTTGTCAATATGACAACAGTTCTGTTAAAACTCGAATTCGATAACTATAACAAGGTTTCAGGATACGAAATTGAAAAAAAGTTATGTTTCAAAAAGATCATTAAAACTGCGGGGCTATGAAACCATAATATGAAGACAATCATTTTCAATCTAAAAATTCTGATTCGCAGATCAACACCAACATTGTTAGATATGGAGTTCCATTGACTATCATATTCCCGATTTGCTTCACATTTTACCTGATTCCTGCATTGGGTGTTTGCAAACAAAGAGCAGCACCATATCCATTCGGAG</canonical>
            <polymorphic>TGATGACCATGAGAACATAAACTTTTGTCTAACTCGGCTTTCGGCTTGTAACTTCTGGTCAGAAGTTGAGGTGTTGCGCTTTTGAACTGATACTGGCCAAGTTCTAGTAAGAACTGTATAGCATTTCCGTTTTGTTTCCTGTAGTTGAGTTAATCATTGTAACTATTAGGTTGGTGCATAAGCTTCTTTCGATTCTGACTAATCTTTCGATCACGCTTCTCTCAATAGCAGAGTGGGATGGCTCAATGAAAGTAACGTTCATGAGCATCGATAGTTGTCAGCCAACGCTCCTAAATTTTCTCGATTCCATCGGCCTAGAACGAGGAAAGCTGTGAATGAAAAAGTGGGTCAACTCCTATCTGGTGTCAATAGTCCTGATGAATCTTCAAAGTAGAGCATTCAAAATTGAAAGAAACTTATGCACCAACCTACTTTTTTTTTCGAAAGAAAACTGTTTCAATACTTTCAGATTTTTTTCTAAAATACACCAAAATTTCAGRAATTCTTCAGTTAGAAGAAACATTGAACCGAAAAAAATCGACAAGAATTTTTGATAGTTTCCCAATTCGTTTGCTTTAGGCAACTGTTAGAAAGTGATAATTAAAAAAAAACTATTCCCACACACTGATATTTTCATGTTTGTATAAATTCTAACTACTAAATAAAGCAGTTTTCAAATGACTTAACCAAAATTAGTCCATTATAACTTGTCAATATGACAACAGTTCTGTTAAAACTCGAATTCGATAACTATAACAAGGTTTCAGGATACGAAATTGAAAAAAAGTTATGTTTCAAAAAGATCATTAAAACTGCGGGGCTATGAAACCATAATATGAAGACAATCATTTTCAATCTAAAAATTCTGATTCGCAGATCAACACCAACATTGTTAGATATGGAGTTCCATTGACTATCATATTCCCGATTTGCTTCACATTTTACCTGATTCCTGCATTGGGTGTTTGCAAACAAAGAGCAGCACCATATCCATTCGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>293 198 139 121 101 94 45 9</canonical_bands>
                <polymorphic_bands>293 198 139 121 101 94 54</polymorphic_bands>
            </assay>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>369 272 135 130 61 30 3</canonical_bands>
                <polymorphic_bands>399 272 135 130 61 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGAAAGAAAACTGTTTCAATAC</pcr_primer_p1>
		<pcr_primer_p2>GGTTAAGTCATTTGAAAACTGC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCGAAAGAAAACTGTTTCAATACTTTCAGATTTTTTTCTAAAATACACCAAAATTTCAGAAATTCTTCAGTTAGAAGAAACATTGAACCGAAAAAAATCGACAAGAATTTTTGATAGTTTCCCAATTCGTTTGCTTTAGGCAACTGTTAGAAAGTGATAATTAAAAAAAAACTATTCCCACACACTGATATTTTCATGTTTGTATAAATTCTAACTACTAAATAAAGCAGTTTTCAAATGACTTAACC</canonical_amplicon>
		<polymorphic_amplicon>TCGAAAGAAAACTGTTTCAATACTTTCAGATTTTTTTCTAAAATACACCAAAATTTCAGRAATTCTTCAGTTAGAAGAAACATTGAACCGAAAAAAATCGACAAGAATTTTTGATAGTTTCCCAATTCGTTTGCTTTAGGCAACTGTTAGAAAGTGATAATTAAAAAAAAACTATTCCCACACACTGATATTTTCATGTTTGTATAAATTCTAACTACTAAATAAAGCAGTTTTCAAATGACTTAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3790</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>212331</contig_pos>
        <strand>+</strand>
        <context>AAGAAGTTTA[C/G]GAATTTTTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTATGTGTAAAGAACATTGGAAACGGAAATTACGGTTTCAAGAAGTTTA</left_flank>
        <right_flank>GAATTTTTTAAACCGTTTTTTAGGTACTGTCATATGCGGGGTTGACTTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGAATCACTTCGTCTGATTTAATATTTTCCACGAGTTCTTCGTTTCGAAGAAGAGCTGAGAATTCAGTTTTTTAGAGATTCAAACTTTTCTTTTTCATGTAATTTTCTTCCTTTTAATTTTAAGGCAGTCATCACTATTGTACTTTTTTTAAATTTTCTATTCCCTCTTGACTCCATTTCTCATTTCTCTGACTTCATAACCCGAAGAGCACTGTCACAAACTACTAGCTACCATTTTCTGTGCTCTCTTCCCCTATCAGTTTTTTTTCGATTTTTACAAGAAGAACCTGCCAAAATTTATCAAAAAGTCCTCATCACATCACAACGATAAGGTGTGGAGTATAGAGGCTACAGACTCCACCAAAAGACTATATTGCGTACAAACAAGAGAAATGAGAGAAGGAAAAGAGAAAGAAAAACAAGAGACGACGAATGTCAAAAGAGTGGTTTATGTGTAAAGAACATTGGAAACGGAAATTACGGTTTCAAGAAGTTTACGAATTTTTTAAACCGTTTTTTAGGTACTGTCATATGCGGGGTTGACTTAAAATGCAAAAATGGATAGACATGTCAAAATAAAACTTTTCTGAAATTCCGAAAGCACTATAACATCTTAAAAAATCTCGGAAAATTCTGGTAATTCGTAACCGTCAAATAACGGATTTTTGTGTCTCTGGAGAAGTATAAAATAGTTCTGAATCAGTAAAAATTTACTTTTCCTATGAAAGATAGTCTACCTTGAAGATGTTAAACTGAATTCGAGAACCTTTCGATTTGTCTGAAAATTTCAGTCTTTACTAATCAAAATCAGATCTTTCATTTTGTGATTGACAACTTTATCAGAATAATCTAACAAAGCGAGATACGAGGGGTTATAGAACAACATACAGTTCAGTGCTGATTTTTGACATTTTTGGCATTTATTTTGTTACAAACGGCATATCTCTTTAGAATTAAATTTGAAAAAAATTCTTGCTACCAAATTGAAGCTCCAATTG</canonical>
            <polymorphic>AAAGAATCACTTCGTCTGATTTAATATTTTCCACGAGTTCTTCGTTTCGAAGAAGAGCTGAGAATTCAGTTTTTTAGAGATTCAAACTTTTCTTTTTCATGTAATTTTCTTCCTTTTAATTTTAAGGCAGTCATCACTATTGTACTTTTTTTAAATTTTCTATTCCCTCTTGACTCCATTTCTCATTTCTCTGACTTCATAACCCGAAGAGCACTGTCACAAACTACTAGCTACCATTTTCTGTGCTCTCTTCCCCTATCAGTTTTTTTTCGATTTTTACAAGAAGAACCTGCCAAAATTTATCAAAAAGTCCTCATCACATCACAACGATAAGGTGTGGAGTATAGAGGCTACAGACTCCACCAAAAGACTATATTGCGTACAAACAAGAGAAATGAGAGAAGGAAAAGAGAAAGAAAAACAAGAGACGACGAATGTCAAAAGAGTGGTTTATGTGTAAAGAACATTGGAAACGGAAATTACGGTTTCAAGAAGTTTASGAATTTTTTAAACCGTTTTTTAGGTACTGTCATATGCGGGGTTGACTTAAAATGCAAAAATGGATAGACATGTCAAAATAAAACTTTTCTGAAATTCCGAAAGCACTATAACATCTTAAAAAATCTCGGAAAATTCTGGTAATTCGTAACCGTCAAATAACGGATTTTTGTGTCTCTGGAGAAGTATAAAATAGTTCTGAATCAGTAAAAATTTACTTTTCCTATGAAAGATAGTCTACCTTGAAGATGTTAAACTGAATTCGAGAACCTTTCGATTTGTCTGAAAATTTCAGTCTTTACTAATCAAAATCAGATCTTTCATTTTGTGATTGACAACTTTATCAGAATAATCTAACAAAGCGAGATACGAGGGGTTATAGAACAACATACAGTTCAGTGCTGATTTTTGACATTTTTGGCATTTATTTTGTTACAAACGGCATATCTCTTTAGAATTAAATTTGAAAAAAATTCTTGCTACCAAATTGAAGCTCCAATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>497 264 193 46</canonical_bands>
                <polymorphic_bands>543 264 193</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGTGTGGAGTATAGAGGCTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGACATGTCTATCCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAGGTGTGGAGTATAGAGGCTACAGACTCCACCAAAAGACTATATTGCGTACAAACAAGAGAAATGAGAGAAGGAAAAGAGAAAGAAAAACAAGAGACGACGAATGTCAAAAGAGTGGTTTATGTGTAAAGAACATTGGAAACGGAAATTACGGTTTCAAGAAGTTTACGAATTTTTTAAACCGTTTTTTAGGTACTGTCATATGCGGGGTTGACTTAAAATGCAAAAATGGATAGACATGTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAGGTGTGGAGTATAGAGGCTACAGACTCCACCAAAAGACTATATTGCGTACAAACAAGAGAAATGAGAGAAGGAAAAGAGAAAGAAAAACAAGAGACGACGAATGTCAAAAGAGTGGTTTATGTGTAAAGAACATTGGAAACGGAAATTACGGTTTCAAGAAGTTTASGAATTTTTTAAACCGTTTTTTAGGTACTGTCATATGCGGGGTTGACTTAAAATGCAAAAATGGATAGACATGTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3791</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>212222</contig_pos>
        <strand>+</strand>
        <context>TACAAACAAG[A/T]GAAATGAGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTATAGAGGCTACAGACTCCACCAAAAGACTATATTGCGTACAAACAAG</left_flank>
        <right_flank>GAAATGAGAGAAGGAAAAGAGAAAGAAAAACAAGAGACGACGAATGTCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCACCACTTCATATTTCTCGTATGCTGAAATCATGCGTCCGTTCGGGAATGATCTTCAAACTTGTGTGGTCACTTGGGTCTTCTACTTAACTCATCCGGCATTTCAACAAAGAATCACTTCGTCTGATTTAATATTTTCCACGAGTTCTTCGTTTCGAAGAAGAGCTGAGAATTCAGTTTTTTAGAGATTCAAACTTTTCTTTTTCATGTAATTTTCTTCCTTTTAATTTTAAGGCAGTCATCACTATTGTACTTTTTTTAAATTTTCTATTCCCTCTTGACTCCATTTCTCATTTCTCTGACTTCATAACCCGAAGAGCACTGTCACAAACTACTAGCTACCATTTTCTGTGCTCTCTTCCCCTATCAGTTTTTTTTCGATTTTTACAAGAAGAACCTGCCAAAATTTATCAAAAAGTCCTCATCACATCACAACGATAAGGTGTGGAGTATAGAGGCTACAGACTCCACCAAAAGACTATATTGCGTACAAACAAGAGAAATGAGAGAAGGAAAAGAGAAAGAAAAACAAGAGACGACGAATGTCAAAAGAGTGGTTTATGTGTAAAGAACATTGGAAACGGAAATTACGGTTTCAAGAAGTTTACGAATTTTTTAAACCGTTTTTTAGGTACTGTCATATGCGGGGTTGACTTAAAATGCAAAAATGGATAGACATGTCAAAATAAAACTTTTCTGAAATTCCGAAAGCACTATAACATCTTAAAAAATCTCGGAAAATTCTGGTAATTCGTAACCGTCAAATAACGGATTTTTGTGTCTCTGGAGAAGTATAAAATAGTTCTGAATCAGTAAAAATTTACTTTTCCTATGAAAGATAGTCTACCTTGAAGATGTTAAACTGAATTCGAGAACCTTTCGATTTGTCTGAAAATTTCAGTCTTTACTAATCAAAATCAGATCTTTCATTTTGTGATTGACAACTTTATCAGAATAATCTAACAAAGCGAGATACGAGGGGTTATAGAACAACATACA</canonical>
            <polymorphic>GGCACCACTTCATATTTCTCGTATGCTGAAATCATGCGTCCGTTCGGGAATGATCTTCAAACTTGTGTGGTCACTTGGGTCTTCTACTTAACTCATCCGGCATTTCAACAAAGAATCACTTCGTCTGATTTAATATTTTCCACGAGTTCTTCGTTTCGAAGAAGAGCTGAGAATTCAGTTTTTTAGAGATTCAAACTTTTCTTTTTCATGTAATTTTCTTCCTTTTAATTTTAAGGCAGTCATCACTATTGTACTTTTTTTAAATTTTCTATTCCCTCTTGACTCCATTTCTCATTTCTCTGACTTCATAACCCGAAGAGCACTGTCACAAACTACTAGCTACCATTTTCTGTGCTCTCTTCCCCTATCAGTTTTTTTTCGATTTTTACAAGAAGAACCTGCCAAAATTTATCAAAAAGTCCTCATCACATCACAACGATAAGGTGTGGAGTATAGAGGCTACAGACTCCACCAAAAGACTATATTGCGTACAAACAAGWGAAATGAGAGAAGGAAAAGAGAAAGAAAAACAAGAGACGACGAATGTCAAAAGAGTGGTTTATGTGTAAAGAACATTGGAAACGGAAATTACGGTTTCAAGAAGTTTACGAATTTTTTAAACCGTTTTTTAGGTACTGTCATATGCGGGGTTGACTTAAAATGCAAAAATGGATAGACATGTCAAAATAAAACTTTTCTGAAATTCCGAAAGCACTATAACATCTTAAAAAATCTCGGAAAATTCTGGTAATTCGTAACCGTCAAATAACGGATTTTTGTGTCTCTGGAGAAGTATAAAATAGTTCTGAATCAGTAAAAATTTACTTTTCCTATGAAAGATAGTCTACCTTGAAGATGTTAAACTGAATTCGAGAACCTTTCGATTTGTCTGAAAATTTCAGTCTTTACTAATCAAAATCAGATCTTTCATTTTGTGATTGACAACTTTATCAGAATAATCTAACAAAGCGAGATACGAGGGGTTATAGAACAACATACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGAGCACTGTCACAAACTACT</pcr_primer_p1>
		<pcr_primer_p2>CATAAACCACTCTTTTGACATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGAGCACTGTCACAAACTACTAGCTACCATTTTCTGTGCTCTCTTCCCCTATCAGTTTTTTTTCGATTTTTACAAGAAGAACCTGCCAAAATTTATCAAAAAGTCCTCATCACATCACAACGATAAGGTGTGGAGTATAGAGGCTACAGACTCCACCAAAAGACTATATTGCGTACAAACAAGAGAAATGAGAGAAGGAAAAGAGAAAGAAAAACAAGAGACGACGAATGTCAAAAGAGTGGTTTATG</canonical_amplicon>
		<polymorphic_amplicon>GAAGAGCACTGTCACAAACTACTAGCTACCATTTTCTGTGCTCTCTTCCCCTATCAGTTTTTTTTCGATTTTTACAAGAAGAACCTGCCAAAATTTATCAAAAAGTCCTCATCACATCACAACGATAAGGTGTGGAGTATAGAGGCTACAGACTCCACCAAAAGACTATATTGCGTACAAACAAGWGAAATGAGAGAAGGAAAAGAGAAAGAAAAACAAGAGACGACGAATGTCAAAAGAGTGGTTTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3883</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>71358</contig_pos>
        <strand>+</strand>
        <context>TTCTTGGAGC[A/G]TCTGTATATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAGCAGAATGATCCAAGCATTACTTCTGCTTGCTTCGGTTCTTGGAGC</left_flank>
        <right_flank>TCTGTATATTATTGGCAGCACAATAAAGAATGGTCATACGTGCAAACATT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGCCTGACACGAACGTATCTGTCTTTTTTCCAATACAATAACACGTCGTCTCGTATCCCTCTCCGCTTCATCTTCTTAGCATAAAACGCGATTCCTGTCGTGTCTTCTGCGTTGCTTCATCTTCCTTAGCTTCTATCCATTTCTTCATTCTCCCTGCACTTTCCATTCCGTCTCTTTTCGGTTTCTTCTCATTTTTCCTGGCCTTTTGATAAAGCCCGCCCATTATTCTTCTCTGTCTCCTCTTCTTTCACCTCTTTTTAGTTTCATCCTTTCCGAATCCTCACCGTTTTTTTCGTATCCCACTCTTTGGCAGTTTTTTTCGTCGAGTTCAGAATAGATCCGATTCTAATCTACTGCCAGTTTGAACGCACCCGTTTATAACACAAAAATTTCATTCGTTCTTCACTTCATTTGTCATCTCAAACACTTTTAAAATTTGCCTCAGTTTTCAGCAGAATGATCCAAGCATTACTTCTGCTTGCTTCGGTTCTTGGAGCGTCTGTATATTATTGGCAGCACAATAAAGAATGGTCATACGTGCAAACATTGGATGGAATTGATCGAGGAGAAATTATACTTCCGAATTACAGTAAGTCAGATTTTCCCACATTTTTTTTGAAATTTTAGTCTTTCAATCTTTCAAACTGTACGTTCACTAAAACGAATACTTACCGTAATTGCTCTAATAGAAGCTCATGAAATCCGTTAACTTTGAGCTTATAAATCTCGGTTGCTGTGAAAGGTATCAAAATGTTGTCAACTGACAACATGATTATCATAACATGATCAATACTTTGTCAGTTGACGACTTTCTGATATCTTTTACTGAAACCGAGATATATGGGCTCAAATTCGACAGTATGGGTGGCCTTCGATTTGAGTGTTTACAGTATTTTTTCTACATTTTTAATCATTAGTTAACAAAGTATTCACTTTTGATTTTGTATTATCATTCAGCTGGAAATTCATATTCCCCCAATTTCAGACGTTCACCCCAT</canonical>
            <polymorphic>AAAGCCTGACACGAACGTATCTGTCTTTTTTCCAATACAATAACACGTCGTCTCGTATCCCTCTCCGCTTCATCTTCTTAGCATAAAACGCGATTCCTGTCGTGTCTTCTGCGTTGCTTCATCTTCCTTAGCTTCTATCCATTTCTTCATTCTCCCTGCACTTTCCATTCCGTCTCTTTTCGGTTTCTTCTCATTTTTCCTGGCCTTTTGATAAAGCCCGCCCATTATTCTTCTCTGTCTCCTCTTCTTTCACCTCTTTTTAGTTTCATCCTTTCCGAATCCTCACCGTTTTTTTCGTATCCCACTCTTTGGCAGTTTTTTTCGTCGAGTTCAGAATAGATCCGATTCTAATCTACTGCCAGTTTGAACGCACCCGTTTATAACACAAAAATTTCATTCGTTCTTCACTTCATTTGTCATCTCAAACACTTTTAAAATTTGCCTCAGTTTTCAGCAGAATGATCCAAGCATTACTTCTGCTTGCTTCGGTTCTTGGAGCRTCTGTATATTATTGGCAGCACAATAAAGAATGGTCATACGTGCAAACATTGGATGGAATTGATCGAGGAGAAATTATACTTCCGAATTACAGTAAGTCAGATTTTCCCACATTTTTTTTGAAATTTTAGTCTTTCAATCTTTCAAACTGTACGTTCACTAAAACGAATACTTACCGTAATTGCTCTAATAGAAGCTCATGAAATCCGTTAACTTTGAGCTTATAAATCTCGGTTGCTGTGAAAGGTATCAAAATGTTGTCAACTGACAACATGATTATCATAACATGATCAATACTTTGTCAGTTGACGACTTTCTGATATCTTTTACTGAAACCGAGATATATGGGCTCAAATTCGACAGTATGGGTGGCCTTCGATTTGAGTGTTTACAGTATTTTTTCTACATTTTTAATCATTAGTTAACAAAGTATTCACTTTTGATTTTGTATTATCATTCAGCTGGAAATTCATATTCCCCCAATTTCAGACGTTCACCCCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTGTCATCTCAAACACTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTGAACGTACAGTTTGAAAGATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CATTTGTCATCTCAAACACTTTTAAAATTTGCCTCAGTTTTCAGCAGAATGATCCAAGCATTACTTCTGCTTGCTTCGGTTCTTGGAGCGTCTGTATATTATTGGCAGCACAATAAAGAATGGTCATACGTGCAAACATTGGATGGAATTGATCGAGGAGAAATTATACTTCCGAATTACAGTAAGTCAGATTTTCCCACATTTTTTTTGAAATTTTAGTCTTTCAATCTTTCAAACTGTACGTTCAC</canonical_amplicon>
		<polymorphic_amplicon>CATTTGTCATCTCAAACACTTTTAAAATTTGCCTCAGTTTTCAGCAGAATGATCCAAGCATTACTTCTGCTTGCTTCGGTTCTTGGAGCRTCTGTATATTATTGGCAGCACAATAAAGAATGGTCATACGTGCAAACATTGGATGGAATTGATCGAGGAGAAATTATACTTCCGAATTACAGTAAGTCAGATTTTCCCACATTTTTTTTGAAATTTTAGTCTTTCAATCTTTCAAACTGTACGTTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3884</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>72723</contig_pos>
        <strand>+</strand>
        <context>ATGATGAAAT[C/G]AGGATTGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGGGAATCCGGAACAAATTTTGGGTTCCAGTGAAGGGCAAATGATGAAAT</left_flank>
        <right_flank>AGGATTGAAATTAGTTTCAAAGTTTGGGAGGATTCTCCATATGAAACATT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAGATGAGAAGGGAACAGGAAACCGATGCAACTTTTGTTTTTGTTGCGTTTCGATTATCGAATCCTTATGAGAGAAACGCGGGGGGTAGAGAGATTTATATGAAAGAAGCGAGACTGAAGGTGTCTAAAAACTGATGATGTATATGAGGGATTTTCTCCTAGATGTTCTGGGATCTTAGAACTGGAAAGAAATAGAATGATCTTTGGAAAAAGAATGAAATTCCTCATCTTTTGATATCTACAGAATAAAAGCTTGAAGATTCAAAGTAAAATTTCAGTCAACTGAAAACAAAATTAAGTCATCCAACCCGAAATGTCTCTAGTCCTACATTTCGCGAAAACGCAATAAAAACCGTTAGATTTTGTATCTTCTAGATCTAAAGCATCTCACGTAGCCAGCCATGGAAACAGTTTTAATTTTGTGTCGAATGAGATGTCAAGATAATGAGGGAATCCGGAACAAATTTTGGGTTCCAGTGAAGGGCAAATGATGAAATCAGGATTGAAATTAGTTTCAAAGTTTGGGAGGATTCTCCATATGAAACATTCTGAGCCGATACTCGGTTTCTGTAACCGATATCAAAAAGTAGTCAACTAACTAAATTTTCATTATAATATCAAATATATTTTGTCAGTTGACCACTTTTTGATATCTTTTACAGAAACGAAGATGAATCGGCTCAAAGTTGAAGGTTAAAAGAGGCGTTCTGTTAAAGTGTTTACGGTATTATCCTTGTCAGAGAAAAAAAANNNNNNNNNNTCGACGAAATTTGTGGCAAAATATGAGAAAAACTAAAAAATAGGTAAATTTAACATTTTCCCGCCGGGTTACTGTCGCACTCGTTTCAACTGTTTCTGGTTGTTTCGGCTTTCAGATATTTGTTTACAAACATCGCATACACTTCGCCTCAACCTTTTTTTTTCTCTTCTTTGGTCTAAATCTAACTCATTTGTTATGAAACAATTAAAACTTCTTTCCTATTAGTATCCTCTCCAGA</canonical>
            <polymorphic>TAAAGATGAGAAGGGAACAGGAAACCGATGCAACTTTTGTTTTTGTTGCGTTTCGATTATCGAATCCTTATGAGAGAAACGCGGGGGGTAGAGAGATTTATATGAAAGAAGCGAGACTGAAGGTGTCTAAAAACTGATGATGTATATGAGGGATTTTCTCCTAGATGTTCTGGGATCTTAGAACTGGAAAGAAATAGAATGATCTTTGGAAAAAGAATGAAATTCCTCATCTTTTGATATCTACAGAATAAAAGCTTGAAGATTCAAAGTAAAATTTCAGTCAACTGAAAACAAAATTAAGTCATCCAACCCGAAATGTCTCTAGTCCTACATTTCGCGAAAACGCAATAAAAACCGTTAGATTTTGTATCTTCTAGATCTAAAGCATCTCACGTAGCCAGCCATGGAAACAGTTTTAATTTTGTGTCGAATGAGATGTCAAGATAATGAGGGAATCCGGAACAAATTTTGGGTTCCAGTGAAGGGCAAATGATGAAATSAGGATTGAAATTAGTTTCAAAGTTTGGGAGGATTCTCCATATGAAACATTCTGAGCCGATACTCGGTTTCTGTAACCGATATCAAAAAGTAGTCAACTAACTAAATTTTCATTATAATATCAAATATATTTTGTCAGTTGACCACTTTTTGATATCTTTTACAGAAACGAAGATGAATCGGCTCAAAGTTGAAGGTTAAAAGAGGCGTTCTGTTAAAGTGTTTACGGTATTATCCTTGTCAGAGAAAAAAAANNNNNNNNNNTCGACGAAATTTGTGGCAAAATATGAGAAAAACTAAAAAATAGGTAAATTTAACATTTTCCCGCCGGGTTACTGTCGCACTCGTTTCAACTGTTTCTGGTTGTTTCGGCTTTCAGATATTTGTTTACAAACATCGCATACACTTCGCCTCAACCTTTTTTTTTCTCTTCTTTGGTCTAAATCTAACTCATTTGTTATGAAACAATTAAAACTTCTTTCCTATTAGTATCCTCTCCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>496 336 66 43 38 17 4</canonical_bands>
                <polymorphic_bands>539 336 66 38 17 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTCAAGATAATGAGGGAATC</pcr_primer_p1>
		<pcr_primer_p2>AAATGAGTTAGATTTAGACCAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>519</pcr_amplicon_size>
		<canonical_amplicon>ATGTCAAGATAATGAGGGAATCCGGAACAAATTTTGGGTTCCAGTGAAGGGCAAATGATGAAATCAGGATTGAAATTAGTTTCAAAGTTTGGGAGGATTCTCCATATGAAACATTCTGAGCCGATACTCGGTTTCTGTAACCGATATCAAAAAGTAGTCAACTAACTAAATTTTCATTATAATATCAAATATATTTTGTCAGTTGACCACTTTTTGATATCTTTTACAGAAACGAAGATGAATCGGCTCAAAGTTGAAGGTTAAAAGAGGCGTTCTGTTAAAGTGTTTACGGTATTATCCTTGTCAGAGAAAAAAAANNNNNNNNNNTCGACGAAATTTGTGGCAAAATATGAGAAAAACTAAAAAATAGGTAAATTTAACATTTTCCCGCCGGGTTACTGTCGCACTCGTTTCAACTGTTTCTGGTTGTTTCGGCTTTCAGATATTTGTTTACAAACATCGCATACACTTCGCCTCAACCTTTTTTTTTCTCTTCTTTGGTCTAAATCTAACTCATTT</canonical_amplicon>
		<polymorphic_amplicon>ATGTCAAGATAATGAGGGAATCCGGAACAAATTTTGGGTTCCAGTGAAGGGCAAATGATGAAATSAGGATTGAAATTAGTTTCAAAGTTTGGGAGGATTCTCCATATGAAACATTCTGAGCCGATACTCGGTTTCTGTAACCGATATCAAAAAGTAGTCAACTAACTAAATTTTCATTATAATATCAAATATATTTTGTCAGTTGACCACTTTTTGATATCTTTTACAGAAACGAAGATGAATCGGCTCAAAGTTGAAGGTTAAAAGAGGCGTTCTGTTAAAGTGTTTACGGTATTATCCTTGTCAGAGAAAAAAAANNNNNNNNNNTCGACGAAATTTGTGGCAAAATATGAGAAAAACTAAAAAATAGGTAAATTTAACATTTTCCCGCCGGGTTACTGTCGCACTCGTTTCAACTGTTTCTGGTTGTTTCGGCTTTCAGATATTTGTTTACAAACATCGCATACACTTCGCCTCAACCTTTTTTTTTCTCTTCTTTGGTCTAAATCTAACTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3885</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>72508</contig_pos>
        <strand>+</strand>
        <context>TTTCAGTCAA[A/C]TGAAAACAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGATATCTACAGAATAAAAGCTTGAAGATTCAAAGTAAAATTTCAGTCAA</left_flank>
        <right_flank>TGAAAACAAAATTAAGTCATCCAACCCGAAATGTCTCTAGTCCTACATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTTTCCTCTCTCACCCACAGCTTTGAAACCCTCCTCCTCTAACGATAAAAACCGCCCGACTGTAAGGTCTAGCCACATTTTCTCCCGCAGTCTAATCTTTTGTCCCTTTTATGTTCATGTATTTTTCATTACAAGAAATGCCAAAAGCAAACTTGTTGGTTGGTTGATGAATGAGAAAAGCATGGATTCTTAGGATAGGACTGATCTAGGGATAAAGATGAGAAGGGAACAGGAAACCGATGCAACTTTTGTTTTTGTTGCGTTTCGATTATCGAATCCTTATGAGAGAAACGCGGGGGGTAGAGAGATTTATATGAAAGAAGCGAGACTGAAGGTGTCTAAAAACTGATGATGTATATGAGGGATTTTCTCCTAGATGTTCTGGGATCTTAGAACTGGAAAGAAATAGAATGATCTTTGGAAAAAGAATGAAATTCCTCATCTTTTGATATCTACAGAATAAAAGCTTGAAGATTCAAAGTAAAATTTCAGTCAACTGAAAACAAAATTAAGTCATCCAACCCGAAATGTCTCTAGTCCTACATTTCGCGAAAACGCAATAAAAACCGTTAGATTTTGTATCTTCTAGATCTAAAGCATCTCACGTAGCCAGCCATGGAAACAGTTTTAATTTTGTGTCGAATGAGATGTCAAGATAATGAGGGAATCCGGAACAAATTTTGGGTTCCAGTGAAGGGCAAATGATGAAATCAGGATTGAAATTAGTTTCAAAGTTTGGGAGGATTCTCCATATGAAACATTCTGAGCCGATACTCGGTTTCTGTAACCGATATCAAAAAGTAGTCAACTAACTAAATTTTCATTATAATATCAAATATATTTTGTCAGTTGACCACTTTTTGATATCTTTTACAGAAACGAAGATGAATCGGCTCAAAGTTGAAGGTTAAAAGAGGCGTTCTGTTAAAGTGTTTACGGTATTATCCTTGTCAGAGAAAAAAAANNNNNNNNNNTCGACGAAATTTGTGGCAAAATA</canonical>
            <polymorphic>CTTTTTTCCTCTCTCACCCACAGCTTTGAAACCCTCCTCCTCTAACGATAAAAACCGCCCGACTGTAAGGTCTAGCCACATTTTCTCCCGCAGTCTAATCTTTTGTCCCTTTTATGTTCATGTATTTTTCATTACAAGAAATGCCAAAAGCAAACTTGTTGGTTGGTTGATGAATGAGAAAAGCATGGATTCTTAGGATAGGACTGATCTAGGGATAAAGATGAGAAGGGAACAGGAAACCGATGCAACTTTTGTTTTTGTTGCGTTTCGATTATCGAATCCTTATGAGAGAAACGCGGGGGGTAGAGAGATTTATATGAAAGAAGCGAGACTGAAGGTGTCTAAAAACTGATGATGTATATGAGGGATTTTCTCCTAGATGTTCTGGGATCTTAGAACTGGAAAGAAATAGAATGATCTTTGGAAAAAGAATGAAATTCCTCATCTTTTGATATCTACAGAATAAAAGCTTGAAGATTCAAAGTAAAATTTCAGTCAAMTGAAAACAAAATTAAGTCATCCAACCCGAAATGTCTCTAGTCCTACATTTCGCGAAAACGCAATAAAAACCGTTAGATTTTGTATCTTCTAGATCTAAAGCATCTCACGTAGCCAGCCATGGAAACAGTTTTAATTTTGTGTCGAATGAGATGTCAAGATAATGAGGGAATCCGGAACAAATTTTGGGTTCCAGTGAAGGGCAAATGATGAAATCAGGATTGAAATTAGTTTCAAAGTTTGGGAGGATTCTCCATATGAAACATTCTGAGCCGATACTCGGTTTCTGTAACCGATATCAAAAAGTAGTCAACTAACTAAATTTTCATTATAATATCAAATATATTTTGTCAGTTGACCACTTTTTGATATCTTTTACAGAAACGAAGATGAATCGGCTCAAAGTTGAAGGTTAAAAGAGGCGTTCTGTTAAAGTGTTTACGGTATTATCCTTGTCAGAGAAAAAAAANNNNNNNNNNTCGACGAAATTTGTGGCAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>497 312 146 45</canonical_bands>
                <polymorphic_bands>809 146 45</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>497 312 83 63 45</canonical_bands>
                <polymorphic_bands>809 83 63 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGAATGAAATTCCTCATCT</pcr_primer_p1>
		<pcr_primer_p2>ATTCCCTCATTATCTTGACATCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGAATGAAATTCCTCATCTTTTGATATCTACAGAATAAAAGCTTGAAGATTCAAAGTAAAATTTCAGTCAACTGAAAACAAAATTAAGTCATCCAACCCGAAATGTCTCTAGTCCTACATTTCGCGAAAACGCAATAAAAACCGTTAGATTTTGTATCTTCTAGATCTAAAGCATCTCACGTAGCCAGCCATGGAAACAGTTTTAATTTTGTGTCGAATGAGATGTCAAGATAATGAGGGAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGAATGAAATTCCTCATCTTTTGATATCTACAGAATAAAAGCTTGAAGATTCAAAGTAAAATTTCAGTCAAMTGAAAACAAAATTAAGTCATCCAACCCGAAATGTCTCTAGTCCTACATTTCGCGAAAACGCAATAAAAACCGTTAGATTTTGTATCTTCTAGATCTAAAGCATCTCACGTAGCCAGCCATGGAAACAGTTTTAATTTTGTGTCGAATGAGATGTCAAGATAATGAGGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3886</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>72473</contig_pos>
        <strand>+</strand>
        <context>TCTACMGAAT[A/T]AAAGCTTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGATCTTTGGAAAAAGAATGAAATTCCTCATCTTTTGATATCTACAGAAT</left_flank>
        <right_flank>AAAGCTTGAAGATTCAAAGTAAAATTTCAGTCAACTGAAAACAAAATTAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAACACACATATCATGTCCACCATTTCAATTTCTCTTTTTTCCTCTCTCACCCACAGCTTTGAAACCCTCCTCCTCTAACGATAAAAACCGCCCGACTGTAAGGTCTAGCCACATTTTCTCCCGCAGTCTAATCTTTTGTCCCTTTTATGTTCATGTATTTTTCATTACAAGAAATGCCAAAAGCAAACTTGTTGGTTGGTTGATGAATGAGAAAAGCATGGATTCTTAGGATAGGACTGATCTAGGGATAAAGATGAGAAGGGAACAGGAAACCGATGCAACTTTTGTTTTTGTTGCGTTTCGATTATCGAATCCTTATGAGAGAAACGCGGGGGGTAGAGAGATTTATATGAAAGAAGCGAGACTGAAGGTGTCTAAAAACTGATGATGTATATGAGGGATTTTCTCCTAGATGTTCTGGGATCTTAGAACTGGAAAGAAATAGAATGATCTTTGGAAAAAGAATGAAATTCCTCATCTTTTGATATCTACAGAATAAAAGCTTGAAGATTCAAAGTAAAATTTCAGTCAACTGAAAACAAAATTAAGTCATCCAACCCGAAATGTCTCTAGTCCTACATTTCGCGAAAACGCAATAAAAACCGTTAGATTTTGTATCTTCTAGATCTAAAGCATCTCACGTAGCCAGCCATGGAAACAGTTTTAATTTTGTGTCGAATGAGATGTCAAGATAATGAGGGAATCCGGAACAAATTTTGGGTTCCAGTGAAGGGCAAATGATGAAATCAGGATTGAAATTAGTTTCAAAGTTTGGGAGGATTCTCCATATGAAACATTCTGAGCCGATACTCGGTTTCTGTAACCGATATCAAAAAGTAGTCAACTAACTAAATTTTCATTATAATATCAAATATATTTTGTCAGTTGACCACTTTTTGATATCTTTTACAGAAACGAAGATGAATCGGCTCAAAGTTGAAGGTTAAAAGAGGCGTTCTGTTAAAGTGTTTACGGTATTATCCTTGTCAGAGAAAAAA</canonical>
            <polymorphic>AGAACACACATATCATGTCCACCATTTCAATTTCTCTTTTTTCCTCTCTCACCCACAGCTTTGAAACCCTCCTCCTCTAACGATAAAAACCGCCCGACTGTAAGGTCTAGCCACATTTTCTCCCGCAGTCTAATCTTTTGTCCCTTTTATGTTCATGTATTTTTCATTACAAGAAATGCCAAAAGCAAACTTGTTGGTTGGTTGATGAATGAGAAAAGCATGGATTCTTAGGATAGGACTGATCTAGGGATAAAGATGAGAAGGGAACAGGAAACCGATGCAACTTTTGTTTTTGTTGCGTTTCGATTATCGAATCCTTATGAGAGAAACGCGGGGGGTAGAGAGATTTATATGAAAGAAGCGAGACTGAAGGTGTCTAAAAACTGATGATGTATATGAGGGATTTTCTCCTAGATGTTCTGGGATCTTAGAACTGGAAAGAAATAGAATGATCTTTGGAAAAAGAATGAAATTCCTCATCTTTTGATATCTACAGAATWAAAGCTTGAAGATTCAAAGTAAAATTTCAGTCAACTGAAAACAAAATTAAGTCATCCAACCCGAAATGTCTCTAGTCCTACATTTCGCGAAAACGCAATAAAAACCGTTAGATTTTGTATCTTCTAGATCTAAAGCATCTCACGTAGCCAGCCATGGAAACAGTTTTAATTTTGTGTCGAATGAGATGTCAAGATAATGAGGGAATCCGGAACAAATTTTGGGTTCCAGTGAAGGGCAAATGATGAAATCAGGATTGAAATTAGTTTCAAAGTTTGGGAGGATTCTCCATATGAAACATTCTGAGCCGATACTCGGTTTCTGTAACCGATATCAAAAAGTAGTCAACTAACTAAATTTTCATTATAATATCAAATATATTTTGTCAGTTGACCACTTTTTGATATCTTTTACAGAAACGAAGATGAATCGGCTCAAAGTTGAAGGTTAAAAGAGGCGTTCTGTTAAAGTGTTTACGGTATTATCCTTGTCAGAGAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATAGAATGATCTTTGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATCTCATTCGACACAAAATTAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAATAGAATGATCTTTGGAAAAAGAATGAAATTCCTCATCTTTTGATATCTACAGAATAAAAGCTTGAAGATTCAAAGTAAAATTTCAGTCAACTGAAAACAAAATTAAGTCATCCAACCCGAAATGTCTCTAGTCCTACATTTCGCGAAAACGCAATAAAAACCGTTAGATTTTGTATCTTCTAGATCTAAAGCATCTCACGTAGCCAGCCATGGAAACAGTTTTAATTTTGTGTCGAATGAGAT</canonical_amplicon>
		<polymorphic_amplicon>GAAATAGAATGATCTTTGGAAAAAGAATGAAATTCCTCATCTTTTGATATCTACAGAATWAAAGCTTGAAGATTCAAAGTAAAATTTCAGTCAACTGAAAACAAAATTAAGTCATCCAACCCGAAATGTCTCTAGTCCTACATTTCGCGAAAACGCAATAAAAACCGTTAGATTTTGTATCTTCTAGATCTAAAGCATCTCACGTAGCCAGCCATGGAAACAGTTTTAATTTTGTGTCGAATGAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3887</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>72468</contig_pos>
        <strand>+</strand>
        <context>TGATATCTAC[A/C]GAATWAAAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAGAATGATCTTTGGAAAAAGAATGAAATTCCTCATCTTTTGATATCTAC</left_flank>
        <right_flank>GAATAAAAGCTTGAAGATTCAAAGTAAAATTTCAGTCAACTGAAAACAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATCAGAACACACATATCATGTCCACCATTTCAATTTCTCTTTTTTCCTCTCTCACCCACAGCTTTGAAACCCTCCTCCTCTAACGATAAAAACCGCCCGACTGTAAGGTCTAGCCACATTTTCTCCCGCAGTCTAATCTTTTGTCCCTTTTATGTTCATGTATTTTTCATTACAAGAAATGCCAAAAGCAAACTTGTTGGTTGGTTGATGAATGAGAAAAGCATGGATTCTTAGGATAGGACTGATCTAGGGATAAAGATGAGAAGGGAACAGGAAACCGATGCAACTTTTGTTTTTGTTGCGTTTCGATTATCGAATCCTTATGAGAGAAACGCGGGGGGTAGAGAGATTTATATGAAAGAAGCGAGACTGAAGGTGTCTAAAAACTGATGATGTATATGAGGGATTTTCTCCTAGATGTTCTGGGATCTTAGAACTGGAAAGAAATAGAATGATCTTTGGAAAAAGAATGAAATTCCTCATCTTTTGATATCTACAGAATAAAAGCTTGAAGATTCAAAGTAAAATTTCAGTCAACTGAAAACAAAATTAAGTCATCCAACCCGAAATGTCTCTAGTCCTACATTTCGCGAAAACGCAATAAAAACCGTTAGATTTTGTATCTTCTAGATCTAAAGCATCTCACGTAGCCAGCCATGGAAACAGTTTTAATTTTGTGTCGAATGAGATGTCAAGATAATGAGGGAATCCGGAACAAATTTTGGGTTCCAGTGAAGGGCAAATGATGAAATCAGGATTGAAATTAGTTTCAAAGTTTGGGAGGATTCTCCATATGAAACATTCTGAGCCGATACTCGGTTTCTGTAACCGATATCAAAAAGTAGTCAACTAACTAAATTTTCATTATAATATCAAATATATTTTGTCAGTTGACCACTTTTTGATATCTTTTACAGAAACGAAGATGAATCGGCTCAAAGTTGAAGGTTAAAAGAGGCGTTCTGTTAAAGTGTTTACGGTATTATCCTTGTCAGAGA</canonical>
            <polymorphic>AGATCAGAACACACATATCATGTCCACCATTTCAATTTCTCTTTTTTCCTCTCTCACCCACAGCTTTGAAACCCTCCTCCTCTAACGATAAAAACCGCCCGACTGTAAGGTCTAGCCACATTTTCTCCCGCAGTCTAATCTTTTGTCCCTTTTATGTTCATGTATTTTTCATTACAAGAAATGCCAAAAGCAAACTTGTTGGTTGGTTGATGAATGAGAAAAGCATGGATTCTTAGGATAGGACTGATCTAGGGATAAAGATGAGAAGGGAACAGGAAACCGATGCAACTTTTGTTTTTGTTGCGTTTCGATTATCGAATCCTTATGAGAGAAACGCGGGGGGTAGAGAGATTTATATGAAAGAAGCGAGACTGAAGGTGTCTAAAAACTGATGATGTATATGAGGGATTTTCTCCTAGATGTTCTGGGATCTTAGAACTGGAAAGAAATAGAATGATCTTTGGAAAAAGAATGAAATTCCTCATCTTTTGATATCTACMGAATAAAAGCTTGAAGATTCAAAGTAAAATTTCAGTCAACTGAAAACAAAATTAAGTCATCCAACCCGAAATGTCTCTAGTCCTACATTTCGCGAAAACGCAATAAAAACCGTTAGATTTTGTATCTTCTAGATCTAAAGCATCTCACGTAGCCAGCCATGGAAACAGTTTTAATTTTGTGTCGAATGAGATGTCAAGATAATGAGGGAATCCGGAACAAATTTTGGGTTCCAGTGAAGGGCAAATGATGAAATCAGGATTGAAATTAGTTTCAAAGTTTGGGAGGATTCTCCATATGAAACATTCTGAGCCGATACTCGGTTTCTGTAACCGATATCAAAAAGTAGTCAACTAACTAAATTTTCATTATAATATCAAATATATTTTGTCAGTTGACCACTTTTTGATATCTTTTACAGAAACGAAGATGAATCGGCTCAAAGTTGAAGGTTAAAAGAGGCGTTCTGTTAAAGTGTTTACGGTATTATCCTTGTCAGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATAGAATGATCTTTGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATCTCATTCGACACAAAATTAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAATAGAATGATCTTTGGAAAAAGAATGAAATTCCTCATCTTTTGATATCTACAGAATAAAAGCTTGAAGATTCAAAGTAAAATTTCAGTCAACTGAAAACAAAATTAAGTCATCCAACCCGAAATGTCTCTAGTCCTACATTTCGCGAAAACGCAATAAAAACCGTTAGATTTTGTATCTTCTAGATCTAAAGCATCTCACGTAGCCAGCCATGGAAACAGTTTTAATTTTGTGTCGAATGAGAT</canonical_amplicon>
		<polymorphic_amplicon>GAAATAGAATGATCTTTGGAAAAAGAATGAAATTCCTCATCTTTTGATATCTACMGAATAAAAGCTTGAAGATTCAAAGTAAAATTTCAGTCAACTGAAAACAAAATTAAGTCATCCAACCCGAAATGTCTCTAGTCCTACATTTCGCGAAAACGCAATAAAAACCGTTAGATTTTGTATCTTCTAGATCTAAAGCATCTCACGTAGCCAGCCATGGAAACAGTTTTAATTTTGTGTCGAATGAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3888</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>142570</contig_pos>
        <strand>+</strand>
        <context>GAATGGGATA[C/T]TCTCGTCCGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGCAGTATTCGGCGGTTCGTTGTGAGATTCATTCAATCAGAATGGGATA</left_flank>
        <right_flank>TCTCGTCCGCGAAAAATTCTTCATTTTCCCCCTTCCCTTTAAACATGGAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAGGTATTTTTTAGTTTTTTTGCTAGCTTAGGTGGAAAGTTACTGATATTCTACTTGGCTCATTCCGGGTCAGGACAGGGGCGGAAAAAATTCTTCCGGCCACCCGGCCCGATCGGCCTGTATAGCTGATTTTCTGAAAACCATTGAAAAATTTTAATGAATTCCAATTGAAAGAAAATTCCCCGAAACATAATGTACATACAAGGATCATGGTCGGCCTGGGCCAGGAGTTTTTTTTTCATTTCGACAGACATCAATAATTGGAATATCCTGTTTTCAATCACTAATAGACTGACATTAAAATATATACCTTATACCCAAAAACAGCATTCGGTAAAAGGCATAAAAACATAAGAATATATCCAGAAATCTCCATCTCAATCTCTTCCCAAAAAGACGAAAGAGTCTTGGTTTGGTGTGTCCGTGTCTGTCATTCACACATATTCTCGGCAGTATTCGGCGGTTCGTTGTGAGATTCATTCAATCAGAATGGGATACTCTCGTCCGCGAAAAATTCTTCATTTTCCCCCTTCCCTTTAAACATGGAAAAGAAAAGAGTTCGGAAAACGAATCAGATTCATAAAAATTTTACAAGACGATCGTCAATAAAAATTGGTTGAAAAACAAAACTATTCAGGGATAGAAAATTAGACATGATGCACAAGAAAGAAGCGTCAAGAGCTCTTCAGGTCAGACTCTTTTTGTGCATATCAATCAGCACACATCATTTTTATTTCAAGTGGAGAGCATAAAAATGGTTAAGGTGGGCAAAGATTGACCAACGAAAGTTGCGAACATTGGTTTCCAGAAAAGTCTGAAAATGGCTTCTCTAGTTTAAAAATGCGTCATTGGTAACTGGAAAAGGATTCTAAATGCGTATAATTGGTAAGAATCTGATCTTTAGAAGCCTTTTGCAAAGCTCAATGGCCAAGAAAAATAACTTTTCAGGCTCAAAATATTTGGGATATGAAACAACAGATGTGCTCTACTTTTTTTTG</canonical>
            <polymorphic>ATCAGGTATTTTTTAGTTTTTTTGCTAGCTTAGGTGGAAAGTTACTGATATTCTACTTGGCTCATTCCGGGTCAGGACAGGGGCGGAAAAAATTCTTCCGGCCACCCGGCCCGATCGGCCTGTATAGCTGATTTTCTGAAAACCATTGAAAAATTTTAATGAATTCCAATTGAAAGAAAATTCCCCGAAACATAATGTACATACAAGGATCATGGTCGGCCTGGGCCAGGAGTTTTTTTTTCATTTCGACAGACATCAATAATTGGAATATCCTGTTTTCAATCACTAATAGACTGACATTAAAATATATACCTTATACCCAAAAACAGCATTCGGTAAAAGGCATAAAAACATAAGAATATATCCAGAAATCTCCATCTCAATCTCTTCCCAAAAAGACGAAAGAGTCTTGGTTTGGTGTGTCCGTGTCTGTCATTCACACATATTCTCGGCAGTATTCGGCGGTTCGTTGTGAGATTCATTCAATCAGAATGGGATAYTCTCGTCCGCGAAAAATTCTTCATTTTCCCCCTTCCCTTTAAACATGGAAAAGAAAAGAGTTCGGAAAACGAATCAGATTCATAAAAATTTTACAAGACGATCGTCAATAAAAATTGGTTGAAAAACAAAACTATTCAGGGATAGAAAATTAGACATGATGCACAAGAAAGAAGCGTCAAGAGCTCTTCAGGTCAGACTCTTTTTGTGCATATCAATCAGCACACATCATTTTTATTTCAAGTGGAGAGCATAAAAATGGTTAAGGTGGGCAAAGATTGACCAACGAAAGTTGCGAACATTGGTTTCCAGAAAAGTCTGAAAATGGCTTCTCTAGTTTAAAAATGCGTCATTGGTAACTGGAAAAGGATTCTAAATGCGTATAATTGGTAAGAATCTGATCTTTAGAAGCCTTTTGCAAAGCTCAATGGCCAAGAAAAATAACTTTTCAGGCTCAAAATATTTGGGATATGAAACAACAGATGTGCTCTACTTTTTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCTGTCATTCACACATATTCT</pcr_primer_p1>
		<pcr_primer_p2>CTTTCTTGTGCATCATGTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TGTCTGTCATTCACACATATTCTCGGCAGTATTCGGCGGTTCGTTGTGAGATTCATTCAATCAGAATGGGATACTCTCGTCCGCGAAAAATTCTTCATTTTCCCCCTTCCCTTTAAACATGGAAAAGAAAAGAGTTCGGAAAACGAATCAGATTCATAAAAATTTTACAAGACGATCGTCAATAAAAATTGGTTGAAAAACAAAACTATTCAGGGATAGAAAATTAGACATGATGCACAAGAAAG</canonical_amplicon>
		<polymorphic_amplicon>TGTCTGTCATTCACACATATTCTCGGCAGTATTCGGCGGTTCGTTGTGAGATTCATTCAATCAGAATGGGATAYTCTCGTCCGCGAAAAATTCTTCATTTTCCCCCTTCCCTTTAAACATGGAAAAGAAAAGAGTTCGGAAAACGAATCAGATTCATAAAAATTTTACAAGACGATCGTCAATAAAAATTGGTTGAAAAACAAAACTATTCAGGGATAGAAAATTAGACATGATGCACAAGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3889</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>142392</contig_pos>
        <strand>+</strand>
        <context>CCTTATACCC[A/C]AAAACAGCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCTGTTTTCAATCACTAATAGACTGACATTAAAATATATACCTTATACCC</left_flank>
        <right_flank>AAAACAGCATTCGGTAAAAGGCATAAAAACATAAGAATATATCCAGAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATACTTCAAGTGATTTTCGAGAAGTGAAAAAAGAAGAAAACAAAAAATTGTAGAACAAATTCAAAACTTTTTCCAAAATTCTAAATCTTCAATATTTCTTTTCTGAAACATTAATGAATGTTTTTGAGGGTTGGTATAGGACATGAATGTATTTTTGTTAGTTAATGTTCAGAAAATAATCAGGTATTTTTTAGTTTTTTTGCTAGCTTAGGTGGAAAGTTACTGATATTCTACTTGGCTCATTCCGGGTCAGGACAGGGGCGGAAAAAATTCTTCCGGCCACCCGGCCCGATCGGCCTGTATAGCTGATTTTCTGAAAACCATTGAAAAATTTTAATGAATTCCAATTGAAAGAAAATTCCCCGAAACATAATGTACATACAAGGATCATGGTCGGCCTGGGCCAGGAGTTTTTTTTTCATTTCGACAGACATCAATAATTGGAATATCCTGTTTTCAATCACTAATAGACTGACATTAAAATATATACCTTATACCCAAAAACAGCATTCGGTAAAAGGCATAAAAACATAAGAATATATCCAGAAATCTCCATCTCAATCTCTTCCCAAAAAGACGAAAGAGTCTTGGTTTGGTGTGTCCGTGTCTGTCATTCACACATATTCTCGGCAGTATTCGGCGGTTCGTTGTGAGATTCATTCAATCAGAATGGGATACTCTCGTCCGCGAAAAATTCTTCATTTTCCCCCTTCCCTTTAAACATGGAAAAGAAAAGAGTTCGGAAAACGAATCAGATTCATAAAAATTTTACAAGACGATCGTCAATAAAAATTGGTTGAAAAACAAAACTATTCAGGGATAGAAAATTAGACATGATGCACAAGAAAGAAGCGTCAAGAGCTCTTCAGGTCAGACTCTTTTTGTGCATATCAATCAGCACACATCATTTTTATTTCAAGTGGAGAGCATAAAAATGGTTAAGGTGGGCAAAGATTGACCAACGAAAGTTGCGAACATTGGTTTCCAGAAAAGTCTGAAA</canonical>
            <polymorphic>ATACTTCAAGTGATTTTCGAGAAGTGAAAAAAGAAGAAAACAAAAAATTGTAGAACAAATTCAAAACTTTTTCCAAAATTCTAAATCTTCAATATTTCTTTTCTGAAACATTAATGAATGTTTTTGAGGGTTGGTATAGGACATGAATGTATTTTTGTTAGTTAATGTTCAGAAAATAATCAGGTATTTTTTAGTTTTTTTGCTAGCTTAGGTGGAAAGTTACTGATATTCTACTTGGCTCATTCCGGGTCAGGACAGGGGCGGAAAAAATTCTTCCGGCCACCCGGCCCGATCGGCCTGTATAGCTGATTTTCTGAAAACCATTGAAAAATTTTAATGAATTCCAATTGAAAGAAAATTCCCCGAAACATAATGTACATACAAGGATCATGGTCGGCCTGGGCCAGGAGTTTTTTTTTCATTTCGACAGACATCAATAATTGGAATATCCTGTTTTCAATCACTAATAGACTGACATTAAAATATATACCTTATACCCMAAAACAGCATTCGGTAAAAGGCATAAAAACATAAGAATATATCCAGAAATCTCCATCTCAATCTCTTCCCAAAAAGACGAAAGAGTCTTGGTTTGGTGTGTCCGTGTCTGTCATTCACACATATTCTCGGCAGTATTCGGCGGTTCGTTGTGAGATTCATTCAATCAGAATGGGATACTCTCGTCCGCGAAAAATTCTTCATTTTCCCCCTTCCCTTTAAACATGGAAAAGAAAAGAGTTCGGAAAACGAATCAGATTCATAAAAATTTTACAAGACGATCGTCAATAAAAATTGGTTGAAAAACAAAACTATTCAGGGATAGAAAATTAGACATGATGCACAAGAAAGAAGCGTCAAGAGCTCTTCAGGTCAGACTCTTTTTGTGCATATCAATCAGCACACATCATTTTTATTTCAAGTGGAGAGCATAAAAATGGTTAAGGTGGGCAAAGATTGACCAACGAAAGTTGCGAACATTGGTTTCCAGAAAAGTCTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTTCGACAGACATCAATAAT</pcr_primer_p1>
		<pcr_primer_p2>CTGATTGAATGAATCTCACAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCATTTCGACAGACATCAATAATTGGAATATCCTGTTTTCAATCACTAATAGACTGACATTAAAATATATACCTTATACCCAAAAACAGCATTCGGTAAAAGGCATAAAAACATAAGAATATATCCAGAAATCTCCATCTCAATCTCTTCCCAAAAAGACGAAAGAGTCTTGGTTTGGTGTGTCCGTGTCTGTCATTCACACATATTCTCGGCAGTATTCGGCGGTTCGTTGTGAGATTCATTCAATCAG</canonical_amplicon>
		<polymorphic_amplicon>TCATTTCGACAGACATCAATAATTGGAATATCCTGTTTTCAATCACTAATAGACTGACATTAAAATATATACCTTATACCCMAAAACAGCATTCGGTAAAAGGCATAAAAACATAAGAATATATCCAGAAATCTCCATCTCAATCTCTTCCCAAAAAGACGAAAGAGTCTTGGTTTGGTGTGTCCGTGTCTGTCATTCACACATATTCTCGGCAGTATTCGGCGGTTCGTTGTGAGATTCATTCAATCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3890</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>142213</contig_pos>
        <strand></strand>
        <context>tttctgaaaa[C/T]cattgaaaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTTCCGGCCACCCGGCCCGATCGGCCTGTATAGCTGATTTTCTGAAAA</left_flank>
        <right_flank>CATTGAAAAATTTTAATGAATTCCAATTGAAAGAAAATTCCCCGAAACAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGAGAATTAATATGATCTCCAATCCCGGTGCCAAAACGGAAAAGAGCATAAAAAAGAAGAGCATGATGTAAAAAGGGACCGATGACTCGGATTAACAAGTTTGAACTGACGCGGTTAAAGAAAAAAGAACATGAAAAGAGAATAAGCAGAACACCTCATCTATGTAACAAAGAGGTGATACTTCAAGTGATTTTCGAGAAGTGAAAAAAGAAGAAAACAAAAAATTGTAGAACAAATTCAAAACTTTTTCCAAAATTCTAAATCTTCAATATTTCTTTTCTGAAACATTAATGAATGTTTTTGAGGGTTGGTATAGGACATGAATGTATTTTTGTTAGTTAATGTTCAGAAAATAATCAGGTATTTTTTAGTTTTTTTGCTAGCTTAGGTGGAAAGTTACTGATATTCTACTTGGCTCATTCCGGGTCAGGACAGGGGCGGAAAAAATTCTTCCGGCCACCCGGCCCGATCGGCCTGTATAGCTGATTTTCTGAAAACCATTGAAAAATTTTAATGAATTCCAATTGAAAGAAAATTCCCCGAAACATAATGTACATACAAGGATCATGGTCGGCCTGGGCCAGGAGTTTTTTTTTCATTTCGACAGACATCAATAATTGGAATATCCTGTTTTCAATCACTAATAGACTGACATTAAAATATATACCTTATACCCAAAAACAGCATTCGGTAAAAGGCATAAAAACATAAGAATATATCCAGAAATCTCCATCTCAATCTCTTCCCAAAAAGACGAAAGAGTCTTGGTTTGGTGTGTCCGTGTCTGTCATTCACACATATTCTCGGCAGTATTCGGCGGTTCGTTGTGAGATTCATTCAATCAGAATGGGATACTCTCGTCCGCGAAAAATTCTTCATTTTCCCCCTTCCCTTTAAACATGGAAAAGAAAAGAGTTCGGAAAACGAATCAGATTCATAAAAATTTTACAAGACGATCGTCAATAAAAATTGGTTGAAAAACAAAACTATTCAGGGAT</canonical>
            <polymorphic>TCAGAGAATTAATATGATCTCCAATCCCGGTGCCAAAACGGAAAAGAGCATAAAAAAGAAGAGCATGATGTAAAAAGGGACCGATGACTCGGATTAACAAGTTTGAACTGACGCGGTTAAAGAAAAAAGAACATGAAAAGAGAATAAGCAGAACACCTCATCTATGTAACAAAGAGGTGATACTTCAAGTGATTTTCGAGAAGTGAAAAAAGAAGAAAACAAAAAATTGTAGAACAAATTCAAAACTTTTTCCAAAATTCTAAATCTTCAATATTTCTTTTCTGAAACATTAATGAATGTTTTTGAGGGTTGGTATAGGACATGAATGTATTTTTGTTAGTTAATGTTCAGAAAATAATCAGGTATTTTTTAGTTTTTTTGCTAGCTTAGGTGGAAAGTTACTGATATTCTACTTGGCTCATTCCGGGTCAGGACAGGGGCGGAAAAAATTCTTCCGGCCACCCGGCCCGATCGGCCTGTATAGCTGATTTTCTGAAAAYCATTGAAAAATTTTAATGAATTCCAATTGAAAGAAAATTCCCCGAAACATAATGTACATACAAGGATCATGGTCGGCCTGGGCCAGGAGTTTTTTTTTCATTTCGACAGACATCAATAATTGGAATATCCTGTTTTCAATCACTAATAGACTGACATTAAAATATATACCTTATACCCAAAAACAGCATTCGGTAAAAGGCATAAAAACATAAGAATATATCCAGAAATCTCCATCTCAATCTCTTCCCAAAAAGACGAAAGAGTCTTGGTTTGGTGTGTCCGTGTCTGTCATTCACACATATTCTCGGCAGTATTCGGCGGTTCGTTGTGAGATTCATTCAATCAGAATGGGATACTCTCGTCCGCGAAAAATTCTTCATTTTCCCCCTTCCCTTTAAACATGGAAAAGAAAAGAGTTCGGAAAACGAATCAGATTCATAAAAATTTTACAAGACGATCGTCAATAAAAATTGGTTGAAAAACAAAACTATTCAGGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGCTTAGGTGGAAAGTTACTGA</pcr_primer_p1>
		<pcr_primer_p2>CAGGATATTCCAATTATTGATGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGCTTAGGTGGAAAGTTACTGATATTCTACTTGGCTCATTCCGGGTCAGGACAGGGGCGGAAAAAATTCTTCCGGCCACCCGGCCCGATCGGCCTGTATAGCTGATTTTCTGAAAACCATTGAAAAATTTTAATGAATTCCAATTGAAAGAAAATTCCCCGAAACATAATGTACATACAAGGATCATGGTCGGCCTGGGCCAGGAGTTTTTTTTTCATTTCGACAGACATCAATAATTGGAATATCCTG</canonical_amplicon>
		<polymorphic_amplicon>TAGCTTAGGTGGAAAGTTACTGATATTCTACTTGGCTCATTCCGGGTCAGGACAGGGGCGGAAAAAATTCTTCCGGCCACCCGGCCCGATCGGCCTGTATAGCTGATTTTCTGAAAAYCATTGAAAAATTTTAATGAATTCCAATTGAAAGAAAATTCCCCGAAACATAATGTACATACAAGGATCATGGTCGGCCTGGGCCAGGAGTTTTTTTTTCATTTCGACAGACATCAATAATTGGAATATCCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3892</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>160116</contig_pos>
        <strand>+</strand>
        <context>GCATAAAATA[A/G]ATAACAAAAM</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTCTTCTGTTTCTCATATCAATAATTTATTTTGAATGTGCATAAAATA</left_flank>
        <right_flank>ATAACAAAAAAAGAAATTAAAATGCATCCTAATCGAGATCAAACATTAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAATTGAACTACGATGGAACATTCCAGCTGAAACAGAAATATCAAGTTGGAATAGATTCGGGAGATAACAATGTAAGAATGGTTTTCATTTTGTTCGTACAAATCGAAGTTATTATAGGAACTGACTCTGGTGATTTCCTCTTTTAACAACTACGGTACCGAAAGAATTCATTACAACCTTGTTGATTCCAAAATCGATCTTCAAAGATATTCACACATCAGCTCAAAGCAAGTTTTGAGAAAGTCAGATACAATTCACTTCGATGATATCCACATCACGATTCACCCGAATTCAATTAATACTTCAATCATTGCTTCAAAGGAAACCACTATCATCAATAACTCCACCATCTAACTTTATTTTCCCCTATCCAGATCACCAGATCTCCAGAATACTCCACGTGTATACGCTTTGAAATCTCTTCTTGCTTTTGGCTCTTTTTCGCTCTTCTCTTCTGTTTCTCATATCAATAATTTATTTTGAATGTGCATAAAATAAATAACAAAAAAAGAAATTAAAATGCATCCTAATCGAGATCAAACATTAATCACCGGAATGGATTGGACATTGGAAAAGAAGGGTCGATGAACAGAAAGAGGGAAAAGATAAAAGAGAAACTGTTTAATTTGATGGTTTTACACGACGGAAAACCGATTTTTTGGCCATTTTCTGGATGTTTTCATCGTCGATAGTTTGCGAAACAACCAGATGTACTATGTTGGACTGTTGAACATCGTATAGATTATTGAAGAACAGTACGAGAAGACATGAAAGCTCCAACATACAGATTGTTGGTGAAACTGAAAAATAACAAACAGTAAAACCTTTATTAGAAGGGTCCTCCGAGATGGGCTTGTGAAAATATAAAAGCCCCAGTAATAGAGGGGTTTTCCGTATGGTTTCAGTGAAATACATATATTCCGAAAATTTCAAAATTTCAAAACCATTGCTAAGCTCTCTTTTATAACTTGCAGTTTAGGTAAAATTCAGAGACCTTG</canonical>
            <polymorphic>GGAATTGAACTACGATGGAACATTCCAGCTGAAACAGAAATATCAAGTTGGAATAGATTCGGGAGATAACAATGTAAGAATGGTTTTCATTTTGTTCGTACAAATCGAAGTTATTATAGGAACTGACTCTGGTGATTTCCTCTTTTAACAACTACGGTACCGAAAGAATTCATTACAACCTTGTTGATTCCAAAATCGATCTTCAAAGATATTCACACATCAGCTCAAAGCAAGTTTTGAGAAAGTCAGATACAATTCACTTCGATGATATCCACATCACGATTCACCCGAATTCAATTAATACTTCAATCATTGCTTCAAAGGAAACCACTATCATCAATAACTCCACCATCTAACTTTATTTTCCCCTATCCAGATCACCAGATCTCCAGAATACTCCACGTGTATACGCTTTGAAATCTCTTCTTGCTTTTGGCTCTTTTTCGCTCTTCTCTTCTGTTTCTCATATCAATAATTTATTTTGAATGTGCATAAAATARATAACAAAAAAAGAAATTAAAATGCATCCTAATCGAGATCAAACATTAATCACCGGAATGGATTGGACATTGGAAAAGAAGGGTCGATGAACAGAAAGAGGGAAAAGATAAAAGAGAAACTGTTTAATTTGATGGTTTTACACGACGGAAAACCGATTTTTTGGCCATTTTCTGGATGTTTTCATCGTCGATAGTTTGCGAAACAACCAGATGTACTATGTTGGACTGTTGAACATCGTATAGATTATTGAAGAACAGTACGAGAAGACATGAAAGCTCCAACATACAGATTGTTGGTGAAACTGAAAAATAACAAACAGTAAAACCTTTATTAGAAGGGTCCTCCGAGATGGGCTTGTGAAAATATAAAAGCCCCAGTAATAGAGGGGTTTTCCGTATGGTTTCAGTGAAATACATATATTCCGAAAATTTCAAAATTTCAAAACCATTGCTAAGCTCTCTTTTATAACTTGCAGTTTAGGTAAAATTCAGAGACCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATACGCTTTGAAATCTCTTC</pcr_primer_p1>
		<pcr_primer_p2>CGTGTAAAACCATCAAATTAAAC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TGTATACGCTTTGAAATCTCTTCTTGCTTTTGGCTCTTTTTCGCTCTTCTCTTCTGTTTCTCATATCAATAATTTATTTTGAATGTGCATAAAATAAATAACAAAAAAAGAAATTAAAATGCATCCTAATCGAGATCAAACATTAATCACCGGAATGGATTGGACATTGGAAAAGAAGGGTCGATGAACAGAAAGAGGGAAAAGATAAAAGAGAAACTGTTTAATTTGATGGTTTTACACG</canonical_amplicon>
		<polymorphic_amplicon>TGTATACGCTTTGAAATCTCTTCTTGCTTTTGGCTCTTTTTCGCTCTTCTCTTCTGTTTCTCATATCAATAATTTATTTTGAATGTGCATAAAATARATAACAAAAAAAGAAATTAAAATGCATCCTAATCGAGATCAAACATTAATCACCGGAATGGATTGGACATTGGAAAAGAAGGGTCGATGAACAGAAAGAGGGAAAAGATAAAAGAGAAACTGTTTAATTTGATGGTTTTACACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3893</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>160126</contig_pos>
        <strand>+</strand>
        <context>RATAACAAAA[A/C]AAGAAATTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCTCATATCAATAATTTATTTTGAATGTGCATAAAATAAATAACAAAA</left_flank>
        <right_flank>AAGAAATTAAAATGCATCCTAATCGAGATCAAACATTAATCACCGGAATG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACGATGGAACATTCCAGCTGAAACAGAAATATCAAGTTGGAATAGATTCGGGAGATAACAATGTAAGAATGGTTTTCATTTTGTTCGTACAAATCGAAGTTATTATAGGAACTGACTCTGGTGATTTCCTCTTTTAACAACTACGGTACCGAAAGAATTCATTACAACCTTGTTGATTCCAAAATCGATCTTCAAAGATATTCACACATCAGCTCAAAGCAAGTTTTGAGAAAGTCAGATACAATTCACTTCGATGATATCCACATCACGATTCACCCGAATTCAATTAATACTTCAATCATTGCTTCAAAGGAAACCACTATCATCAATAACTCCACCATCTAACTTTATTTTCCCCTATCCAGATCACCAGATCTCCAGAATACTCCACGTGTATACGCTTTGAAATCTCTTCTTGCTTTTGGCTCTTTTTCGCTCTTCTCTTCTGTTTCTCATATCAATAATTTATTTTGAATGTGCATAAAATAAATAACAAAAAAAGAAATTAAAATGCATCCTAATCGAGATCAAACATTAATCACCGGAATGGATTGGACATTGGAAAAGAAGGGTCGATGAACAGAAAGAGGGAAAAGATAAAAGAGAAACTGTTTAATTTGATGGTTTTACACGACGGAAAACCGATTTTTTGGCCATTTTCTGGATGTTTTCATCGTCGATAGTTTGCGAAACAACCAGATGTACTATGTTGGACTGTTGAACATCGTATAGATTATTGAAGAACAGTACGAGAAGACATGAAAGCTCCAACATACAGATTGTTGGTGAAACTGAAAAATAACAAACAGTAAAACCTTTATTAGAAGGGTCCTCCGAGATGGGCTTGTGAAAATATAAAAGCCCCAGTAATAGAGGGGTTTTCCGTATGGTTTCAGTGAAATACATATATTCCGAAAATTTCAAAATTTCAAAACCATTGCTAAGCTCTCTTTTATAACTTGCAGTTTAGGTAAAATTCAGAGACCTTGGAACAAGAAG</canonical>
            <polymorphic>TACGATGGAACATTCCAGCTGAAACAGAAATATCAAGTTGGAATAGATTCGGGAGATAACAATGTAAGAATGGTTTTCATTTTGTTCGTACAAATCGAAGTTATTATAGGAACTGACTCTGGTGATTTCCTCTTTTAACAACTACGGTACCGAAAGAATTCATTACAACCTTGTTGATTCCAAAATCGATCTTCAAAGATATTCACACATCAGCTCAAAGCAAGTTTTGAGAAAGTCAGATACAATTCACTTCGATGATATCCACATCACGATTCACCCGAATTCAATTAATACTTCAATCATTGCTTCAAAGGAAACCACTATCATCAATAACTCCACCATCTAACTTTATTTTCCCCTATCCAGATCACCAGATCTCCAGAATACTCCACGTGTATACGCTTTGAAATCTCTTCTTGCTTTTGGCTCTTTTTCGCTCTTCTCTTCTGTTTCTCATATCAATAATTTATTTTGAATGTGCATAAAATAAATAACAAAAMAAGAAATTAAAATGCATCCTAATCGAGATCAAACATTAATCACCGGAATGGATTGGACATTGGAAAAGAAGGGTCGATGAACAGAAAGAGGGAAAAGATAAAAGAGAAACTGTTTAATTTGATGGTTTTACACGACGGAAAACCGATTTTTTGGCCATTTTCTGGATGTTTTCATCGTCGATAGTTTGCGAAACAACCAGATGTACTATGTTGGACTGTTGAACATCGTATAGATTATTGAAGAACAGTACGAGAAGACATGAAAGCTCCAACATACAGATTGTTGGTGAAACTGAAAAATAACAAACAGTAAAACCTTTATTAGAAGGGTCCTCCGAGATGGGCTTGTGAAAATATAAAAGCCCCAGTAATAGAGGGGTTTTCCGTATGGTTTCAGTGAAATACATATATTCCGAAAATTTCAAAATTTCAAAACCATTGCTAAGCTCTCTTTTATAACTTGCAGTTTAGGTAAAATTCAGAGACCTTGGAACAAGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATACGCTTTGAAATCTCTTC</pcr_primer_p1>
		<pcr_primer_p2>CGTGTAAAACCATCAAATTAAAC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TGTATACGCTTTGAAATCTCTTCTTGCTTTTGGCTCTTTTTCGCTCTTCTCTTCTGTTTCTCATATCAATAATTTATTTTGAATGTGCATAAAATAAATAACAAAAAAAGAAATTAAAATGCATCCTAATCGAGATCAAACATTAATCACCGGAATGGATTGGACATTGGAAAAGAAGGGTCGATGAACAGAAAGAGGGAAAAGATAAAAGAGAAACTGTTTAATTTGATGGTTTTACACG</canonical_amplicon>
		<polymorphic_amplicon>TGTATACGCTTTGAAATCTCTTCTTGCTTTTGGCTCTTTTTCGCTCTTCTCTTCTGTTTCTCATATCAATAATTTATTTTGAATGTGCATAAAATAAATAACAAAAMAAGAAATTAAAATGCATCCTAATCGAGATCAAACATTAATCACCGGAATGGATTGGACATTGGAAAAGAAGGGTCGATGAACAGAAAGAGGGAAAAGATAAAAGAGAAACTGTTTAATTTGATGGTTTTACACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3894</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>162074</contig_pos>
        <strand>+</strand>
        <context>AGTAATMGAA[A/C]ATTTTGGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCTGTTTCATTCCACTGAAAATTGATTATTTGGAAGAACAGTAATCGAA</left_flank>
        <right_flank>ATTTTGGATTACTGTGGGATCCGTAATAGAAGGACCCCCCGAATTTTCAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCGATTATCACATCGCACTCCACAATAGGAGGTCACAATTTAGCCCTTTAACAAAACACATCCAAGCTATCCTTATCATTTTCTATCGTTTTTCTCATATCTATTCTATTGCCGAAATGTGAAGCATCACGGCTTATCTATGATCTCAACAATAGCCTATTCATCATCCCCAATATTGTCTAATTCTTGTTTTCTCACCTGGACGCTAGCGAATAATTGTGTGGAGCGATATATGGATGTTGTCCATCCATTTATAAGTGGTACCTTACGAGGCTGAAATTGAACAAAAAAAGTTAGATAGGAAATATAAAGCATACTTACATTACAGAAATTGTGATCATTCATACCAAATATGTAGGAACTCTGATTGTTCACATACAAATTGACCCACCATGAACCAAGATTCCATTTTGTGTTATTTTTCCAAGGAATCCATATTTGTCCGTTTCCTGTTTCATTCCACTGAAAATTGATTATTTGGAAGAACAGTAATCGAAAATTTTGGATTACTGTGGGATCCGTAATAGAAGGACCCCCCGAATTTTCAGCTTTGAGCCTATTTATCTCGATCCCTGTCAAAGATATAAAAAGAGTTGTCAGCTAGTAAATTGTTCAACACAACGTTACGAACATTTTATCAGTTGACACATTTTCGATATTTTGCATTGGAGTCAATAAAAATTTGCAAGAACTAGACAGTGTGGGGGATCTTCTATTACAAGTTTTACAGTATTCTTTTTCTTTTTCATTGAGAAGGTTACCTGAAAGTTGGATCTAATGTATTGAGTCATATTTGGTTGATTATCATATTTGGTATGATGTGGATGAGCAGCAACCCATAATCCAATTAAAAACAATGAAAATGGAACCATCCCAAAAACGATAAGTGCAAAACGAAGAGTCATATGAATGTGAGCAAGCTCTTCTTCATCTTCTGGAGCTCGATACGGATGATCTTTCCGATGGCTTTGTCGTAGATGCTTGTGTATTGTCATGCC</canonical>
            <polymorphic>CTCCGATTATCACATCGCACTCCACAATAGGAGGTCACAATTTAGCCCTTTAACAAAACACATCCAAGCTATCCTTATCATTTTCTATCGTTTTTCTCATATCTATTCTATTGCCGAAATGTGAAGCATCACGGCTTATCTATGATCTCAACAATAGCCTATTCATCATCCCCAATATTGTCTAATTCTTGTTTTCTCACCTGGACGCTAGCGAATAATTGTGTGGAGCGATATATGGATGTTGTCCATCCATTTATAAGTGGTACCTTACGAGGCTGAAATTGAACAAAAAAAGTTAGATAGGAAATATAAAGCATACTTACATTACAGAAATTGTGATCATTCATACCAAATATGTAGGAACTCTGATTGTTCACATACAAATTGACCCACCATGAACCAAGATTCCATTTTGTGTTATTTTTCCAAGGAATCCATATTTGTCCGTTTCCTGTTTCATTCCACTGAAAATTGATTATTTGGAAGAACAGTAATCGAAMATTTTGGATTACTGTGGGATCCGTAATAGAAGGACCCCCCGAATTTTCAGCTTTGAGCCTATTTATCTCGATCCCTGTCAAAGATATAAAAAGAGTTGTCAGCTAGTAAATTGTTCAACACAACGTTACGAACATTTTATCAGTTGACACATTTTCGATATTTTGCATTGGAGTCAATAAAAATTTGCAAGAACTAGACAGTGTGGGGGATCTTCTATTACAAGTTTTACAGTATTCTTTTTCTTTTTCATTGAGAAGGTTACCTGAAAGTTGGATCTAATGTATTGAGTCATATTTGGTTGATTATCATATTTGGTATGATGTGGATGAGCAGCAACCCATAATCCAATTAAAAACAATGAAAATGGAACCATCCCAAAAACGATAAGTGCAAAACGAAGAGTCATATGAATGTGAGCAAGCTCTTCTTCATCTTCTGGAGCTCGATACGGATGATCTTTCCGATGGCTTTGTCGTAGATGCTTGTGTATTGTCATGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>499 319 140 42</canonical_bands>
                <polymorphic_bands>541 319 140</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>166 153 145 87 73 67 63 52 51 42 38 33 30</canonical_bands>
                <polymorphic_bands>166 153 145 87 73 72 67 63 52 51 38 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCCTGTTTCATTCCACTG</pcr_primer_p1>
		<pcr_primer_p2>AACTTTCAGGTAACCTTCTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>325</pcr_amplicon_size>
		<canonical_amplicon>TTTCCTGTTTCATTCCACTGAAAATTGATTATTTGGAAGAACAGTAATCGAAAATTTTGGATTACTGTGGGATCCGTAATAGAAGGACCCCCCGAATTTTCAGCTTTGAGCCTATTTATCTCGATCCCTGTCAAAGATATAAAAAGAGTTGTCAGCTAGTAAATTGTTCAACACAACGTTACGAACATTTTATCAGTTGACACATTTTCGATATTTTGCATTGGAGTCAATAAAAATTTGCAAGAACTAGACAGTGTGGGGGATCTTCTATTACAAGTTTTACAGTATTCTTTTTCTTTTTCATTGAGAAGGTTACCTGAAAGTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCCTGTTTCATTCCACTGAAAATTGATTATTTGGAAGAACAGTAATCGAAMATTTTGGATTACTGTGGGATCCGTAATAGAAGGACCCCCCGAATTTTCAGCTTTGAGCCTATTTATCTCGATCCCTGTCAAAGATATAAAAAGAGTTGTCAGCTAGTAAATTGTTCAACACAACGTTACGAACATTTTATCAGTTGACACATTTTCGATATTTTGCATTGGAGTCAATAAAAATTTGCAAGAACTAGACAGTGTGGGGGATCTTCTATTACAAGTTTTACAGTATTCTTTTTCTTTTTCATTGAGAAGGTTACCTGAAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3895</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>162070</contig_pos>
        <strand>+</strand>
        <context>GAACAGTAAT[A/C]GAAMATTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGTTTCCTGTTTCATTCCACTGAAAATTGATTATTTGGAAGAACAGTAAT</left_flank>
        <right_flank>GAAAATTTTGGATTACTGTGGGATCCGTAATAGAAGGACCCCCCGAATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGTCTCCGATTATCACATCGCACTCCACAATAGGAGGTCACAATTTAGCCCTTTAACAAAACACATCCAAGCTATCCTTATCATTTTCTATCGTTTTTCTCATATCTATTCTATTGCCGAAATGTGAAGCATCACGGCTTATCTATGATCTCAACAATAGCCTATTCATCATCCCCAATATTGTCTAATTCTTGTTTTCTCACCTGGACGCTAGCGAATAATTGTGTGGAGCGATATATGGATGTTGTCCATCCATTTATAAGTGGTACCTTACGAGGCTGAAATTGAACAAAAAAAGTTAGATAGGAAATATAAAGCATACTTACATTACAGAAATTGTGATCATTCATACCAAATATGTAGGAACTCTGATTGTTCACATACAAATTGACCCACCATGAACCAAGATTCCATTTTGTGTTATTTTTCCAAGGAATCCATATTTGTCCGTTTCCTGTTTCATTCCACTGAAAATTGATTATTTGGAAGAACAGTAATCGAAAATTTTGGATTACTGTGGGATCCGTAATAGAAGGACCCCCCGAATTTTCAGCTTTGAGCCTATTTATCTCGATCCCTGTCAAAGATATAAAAAGAGTTGTCAGCTAGTAAATTGTTCAACACAACGTTACGAACATTTTATCAGTTGACACATTTTCGATATTTTGCATTGGAGTCAATAAAAATTTGCAAGAACTAGACAGTGTGGGGGATCTTCTATTACAAGTTTTACAGTATTCTTTTTCTTTTTCATTGAGAAGGTTACCTGAAAGTTGGATCTAATGTATTGAGTCATATTTGGTTGATTATCATATTTGGTATGATGTGGATGAGCAGCAACCCATAATCCAATTAAAAACAATGAAAATGGAACCATCCCAAAAACGATAAGTGCAAAACGAAGAGTCATATGAATGTGAGCAAGCTCTTCTTCATCTTCTGGAGCTCGATACGGATGATCTTTCCGATGGCTTTGTCGTAGATGCTTGTGTATTGTCA</canonical>
            <polymorphic>TAGTCTCCGATTATCACATCGCACTCCACAATAGGAGGTCACAATTTAGCCCTTTAACAAAACACATCCAAGCTATCCTTATCATTTTCTATCGTTTTTCTCATATCTATTCTATTGCCGAAATGTGAAGCATCACGGCTTATCTATGATCTCAACAATAGCCTATTCATCATCCCCAATATTGTCTAATTCTTGTTTTCTCACCTGGACGCTAGCGAATAATTGTGTGGAGCGATATATGGATGTTGTCCATCCATTTATAAGTGGTACCTTACGAGGCTGAAATTGAACAAAAAAAGTTAGATAGGAAATATAAAGCATACTTACATTACAGAAATTGTGATCATTCATACCAAATATGTAGGAACTCTGATTGTTCACATACAAATTGACCCACCATGAACCAAGATTCCATTTTGTGTTATTTTTCCAAGGAATCCATATTTGTCCGTTTCCTGTTTCATTCCACTGAAAATTGATTATTTGGAAGAACAGTAATMGAAAATTTTGGATTACTGTGGGATCCGTAATAGAAGGACCCCCCGAATTTTCAGCTTTGAGCCTATTTATCTCGATCCCTGTCAAAGATATAAAAAGAGTTGTCAGCTAGTAAATTGTTCAACACAACGTTACGAACATTTTATCAGTTGACACATTTTCGATATTTTGCATTGGAGTCAATAAAAATTTGCAAGAACTAGACAGTGTGGGGGATCTTCTATTACAAGTTTTACAGTATTCTTTTTCTTTTTCATTGAGAAGGTTACCTGAAAGTTGGATCTAATGTATTGAGTCATATTTGGTTGATTATCATATTTGGTATGATGTGGATGAGCAGCAACCCATAATCCAATTAAAAACAATGAAAATGGAACCATCCCAAAAACGATAAGTGCAAAACGAAGAGTCATATGAATGTGAGCAAGCTCTTCTTCATCTTCTGGAGCTCGATACGGATGATCTTTCCGATGGCTTTGTCGTAGATGCTTGTGTATTGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 289 87 73 51</canonical_bands>
                <polymorphic_bands>573 289 87 51</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATTTGTCCGTTTCCTGTTT</pcr_primer_p1>
		<pcr_primer_p2>AACTTTCAGGTAACCTTCTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>336</pcr_amplicon_size>
		<canonical_amplicon>ATATTTGTCCGTTTCCTGTTTCATTCCACTGAAAATTGATTATTTGGAAGAACAGTAATCGAAAATTTTGGATTACTGTGGGATCCGTAATAGAAGGACCCCCCGAATTTTCAGCTTTGAGCCTATTTATCTCGATCCCTGTCAAAGATATAAAAAGAGTTGTCAGCTAGTAAATTGTTCAACACAACGTTACGAACATTTTATCAGTTGACACATTTTCGATATTTTGCATTGGAGTCAATAAAAATTTGCAAGAACTAGACAGTGTGGGGGATCTTCTATTACAAGTTTTACAGTATTCTTTTTCTTTTTCATTGAGAAGGTTACCTGAAAGTT</canonical_amplicon>
		<polymorphic_amplicon>ATATTTGTCCGTTTCCTGTTTCATTCCACTGAAAATTGATTATTTGGAAGAACAGTAATMGAAAATTTTGGATTACTGTGGGATCCGTAATAGAAGGACCCCCCGAATTTTCAGCTTTGAGCCTATTTATCTCGATCCCTGTCAAAGATATAAAAAGAGTTGTCAGCTAGTAAATTGTTCAACACAACGTTACGAACATTTTATCAGTTGACACATTTTCGATATTTTGCATTGGAGTCAATAAAAATTTGCAAGAACTAGACAGTGTGGGGGATCTTCTATTACAAGTTTTACAGTATTCTTTTTCTTTTTCATTGAGAAGGTTACCTGAAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3896</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>161919</contig_pos>
        <strand>+</strand>
        <context>TGTGATCATT[C/T]ATACCAAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTAGATAGGAAATATAAAGCATACTTACATTACAGAAATTGTGATCATT</left_flank>
        <right_flank>ATACCAAATATGTAGGAACTCTGATTGTTCACATACAAATTGACCCACCA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATACCGTATCGTAAGGATGTCTGAAAATACTTGGTCTGATATAAAACAGTAATTTTTATGAGGAGGTGATAATCGTTGGATTCTTTGGAAGCTTGTATCTCAATTAAATCAGTTTTCCCTAACGTCCTCTTTTTTTTCACGAAACTTCCTAGTCTCCGATTATCACATCGCACTCCACAATAGGAGGTCACAATTTAGCCCTTTAACAAAACACATCCAAGCTATCCTTATCATTTTCTATCGTTTTTCTCATATCTATTCTATTGCCGAAATGTGAAGCATCACGGCTTATCTATGATCTCAACAATAGCCTATTCATCATCCCCAATATTGTCTAATTCTTGTTTTCTCACCTGGACGCTAGCGAATAATTGTGTGGAGCGATATATGGATGTTGTCCATCCATTTATAAGTGGTACCTTACGAGGCTGAAATTGAACAAAAAAAGTTAGATAGGAAATATAAAGCATACTTACATTACAGAAATTGTGATCATTCATACCAAATATGTAGGAACTCTGATTGTTCACATACAAATTGACCCACCATGAACCAAGATTCCATTTTGTGTTATTTTTCCAAGGAATCCATATTTGTCCGTTTCCTGTTTCATTCCACTGAAAATTGATTATTTGGAAGAACAGTAATCGAAAATTTTGGATTACTGTGGGATCCGTAATAGAAGGACCCCCCGAATTTTCAGCTTTGAGCCTATTTATCTCGATCCCTGTCAAAGATATAAAAAGAGTTGTCAGCTAGTAAATTGTTCAACACAACGTTACGAACATTTTATCAGTTGACACATTTTCGATATTTTGCATTGGAGTCAATAAAAATTTGCAAGAACTAGACAGTGTGGGGGATCTTCTATTACAAGTTTTACAGTATTCTTTTTCTTTTTCATTGAGAAGGTTACCTGAAAGTTGGATCTAATGTATTGAGTCATATTTGGTTGATTATCATATTTGGTATGATGTGGATGAGCAGCAACCCATAAT</canonical>
            <polymorphic>AGATACCGTATCGTAAGGATGTCTGAAAATACTTGGTCTGATATAAAACAGTAATTTTTATGAGGAGGTGATAATCGTTGGATTCTTTGGAAGCTTGTATCTCAATTAAATCAGTTTTCCCTAACGTCCTCTTTTTTTTCACGAAACTTCCTAGTCTCCGATTATCACATCGCACTCCACAATAGGAGGTCACAATTTAGCCCTTTAACAAAACACATCCAAGCTATCCTTATCATTTTCTATCGTTTTTCTCATATCTATTCTATTGCCGAAATGTGAAGCATCACGGCTTATCTATGATCTCAACAATAGCCTATTCATCATCCCCAATATTGTCTAATTCTTGTTTTCTCACCTGGACGCTAGCGAATAATTGTGTGGAGCGATATATGGATGTTGTCCATCCATTTATAAGTGGTACCTTACGAGGCTGAAATTGAACAAAAAAAGTTAGATAGGAAATATAAAGCATACTTACATTACAGAAATTGTGATCATTYATACCAAATATGTAGGAACTCTGATTGTTCACATACAAATTGACCCACCATGAACCAAGATTCCATTTTGTGTTATTTTTCCAAGGAATCCATATTTGTCCGTTTCCTGTTTCATTCCACTGAAAATTGATTATTTGGAAGAACAGTAATCGAAAATTTTGGATTACTGTGGGATCCGTAATAGAAGGACCCCCCGAATTTTCAGCTTTGAGCCTATTTATCTCGATCCCTGTCAAAGATATAAAAAGAGTTGTCAGCTAGTAAATTGTTCAACACAACGTTACGAACATTTTATCAGTTGACACATTTTCGATATTTTGCATTGGAGTCAATAAAAATTTGCAAGAACTAGACAGTGTGGGGGATCTTCTATTACAAGTTTTACAGTATTCTTTTTCTTTTTCATTGAGAAGGTTACCTGAAAGTTGGATCTAATGTATTGAGTCATATTTGGTTGATTATCATATTTGGTATGATGTGGATGAGCAGCAACCCATAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCTAATTCTTGTTTTCTCACC</pcr_primer_p1>
		<pcr_primer_p2>GAAAAATAACACAAAATGGAATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTCTAATTCTTGTTTTCTCACCTGGACGCTAGCGAATAATTGTGTGGAGCGATATATGGATGTTGTCCATCCATTTATAAGTGGTACCTTACGAGGCTGAAATTGAACAAAAAAAGTTAGATAGGAAATATAAAGCATACTTACATTACAGAAATTGTGATCATTCATACCAAATATGTAGGAACTCTGATTGTTCACATACAAATTGACCCACCATGAACCAAGATTCCATTTTGTGTTATTTTTC</canonical_amplicon>
		<polymorphic_amplicon>TGTCTAATTCTTGTTTTCTCACCTGGACGCTAGCGAATAATTGTGTGGAGCGATATATGGATGTTGTCCATCCATTTATAAGTGGTACCTTACGAGGCTGAAATTGAACAAAAAAAGTTAGATAGGAAATATAAAGCATACTTACATTACAGAAATTGTGATCATTYATACCAAATATGTAGGAACTCTGATTGTTCACATACAAATTGACCCACCATGAACCAAGATTCCATTTTGTGTTATTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3897</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>162323</contig_pos>
        <strand>+</strand>
        <context>TTTTCTTTTT[A/C]ATTGAGAAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAGTGTGGGGGATCTTCTATTACAAGTTTTACAGTATTCTTTTTCTTTTT</left_flank>
        <right_flank>ATTGAGAAGGTTACCTGAAAGTTGGATCTAATGTATTGAGTCATATTTGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATTTATAAGTGGTACCTTACGAGGCTGAAATTGAACAAAAAAAGTTAGATAGGAAATATAAAGCATACTTACATTACAGAAATTGTGATCATTCATACCAAATATGTAGGAACTCTGATTGTTCACATACAAATTGACCCACCATGAACCAAGATTCCATTTTGTGTTATTTTTCCAAGGAATCCATATTTGTCCGTTTCCTGTTTCATTCCACTGAAAATTGATTATTTGGAAGAACAGTAATCGAAAATTTTGGATTACTGTGGGATCCGTAATAGAAGGACCCCCCGAATTTTCAGCTTTGAGCCTATTTATCTCGATCCCTGTCAAAGATATAAAAAGAGTTGTCAGCTAGTAAATTGTTCAACACAACGTTACGAACATTTTATCAGTTGACACATTTTCGATATTTTGCATTGGAGTCAATAAAAATTTGCAAGAACTAGACAGTGTGGGGGATCTTCTATTACAAGTTTTACAGTATTCTTTTTCTTTTTCATTGAGAAGGTTACCTGAAAGTTGGATCTAATGTATTGAGTCATATTTGGTTGATTATCATATTTGGTATGATGTGGATGAGCAGCAACCCATAATCCAATTAAAAACAATGAAAATGGAACCATCCCAAAAACGATAAGTGCAAAACGAAGAGTCATATGAATGTGAGCAAGCTCTTCTTCATCTTCTGGAGCTCGATACGGATGATCTTTCCGATGGCTTTGTCGTAGATGCTTGTGTATTGTCATGCCTAATAAAAATCAAAGGATTAGAGGAACAGTTTATTTCTGGAACAGTTTTATTTGAAAGAAAAACAGGAACATGATATAGTTGATATGTTTCACAGAGACACCTAAAATGGATCTATAATGATGAGGGCGTGAAGAAAGAAGAACGCAAAAAACCCGTGCATGACACAGTGTGATAACTACGATAAATACAGTATGAATCAGATGTTTCAACTGGNNNNNNNNNNNNGAGGATGCCAAAAAATGAGGAGG</canonical>
            <polymorphic>CCATTTATAAGTGGTACCTTACGAGGCTGAAATTGAACAAAAAAAGTTAGATAGGAAATATAAAGCATACTTACATTACAGAAATTGTGATCATTCATACCAAATATGTAGGAACTCTGATTGTTCACATACAAATTGACCCACCATGAACCAAGATTCCATTTTGTGTTATTTTTCCAAGGAATCCATATTTGTCCGTTTCCTGTTTCATTCCACTGAAAATTGATTATTTGGAAGAACAGTAATCGAAAATTTTGGATTACTGTGGGATCCGTAATAGAAGGACCCCCCGAATTTTCAGCTTTGAGCCTATTTATCTCGATCCCTGTCAAAGATATAAAAAGAGTTGTCAGCTAGTAAATTGTTCAACACAACGTTACGAACATTTTATCAGTTGACACATTTTCGATATTTTGCATTGGAGTCAATAAAAATTTGCAAGAACTAGACAGTGTGGGGGATCTTCTATTACAAGTTTTACAGTATTCTTTTTCTTTTTMATTGAGAAGGTTACCTGAAAGTTGGATCTAATGTATTGAGTCATATTTGGTTGATTATCATATTTGGTATGATGTGGATGAGCAGCAACCCATAATCCAATTAAAAACAATGAAAATGGAACCATCCCAAAAACGATAAGTGCAAAACGAAGAGTCATATGAATGTGAGCAAGCTCTTCTTCATCTTCTGGAGCTCGATACGGATGATCTTTCCGATGGCTTTGTCGTAGATGCTTGTGTATTGTCATGCCTAATAAAAATCAAAGGATTAGAGGAACAGTTTATTTCTGGAACAGTTTTATTTGAAAGAAAAACAGGAACATGATATAGTTGATATGTTTCACAGAGACACCTAAAATGGATCTATAATGATGAGGGCGTGAAGAAAGAAGAACGCAAAAAACCCGTGCATGACACAGTGTGATAACTACGATAAATACAGTATGAATCAGATGTTTCAACTGGNNNNNNNNNNNNGAGGATGCCAAAAAATGAGGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTGATTATTTGGAAGAACAG</pcr_primer_p1>
		<pcr_primer_p2>TCAACCAAATATGACTCAATACA</pcr_primer_p2>
		<pcr_amplicon_size>335</pcr_amplicon_size>
		<canonical_amplicon>AAATTGATTATTTGGAAGAACAGTAATCGAAAATTTTGGATTACTGTGGGATCCGTAATAGAAGGACCCCCCGAATTTTCAGCTTTGAGCCTATTTATCTCGATCCCTGTCAAAGATATAAAAAGAGTTGTCAGCTAGTAAATTGTTCAACACAACGTTACGAACATTTTATCAGTTGACACATTTTCGATATTTTGCATTGGAGTCAATAAAAATTTGCAAGAACTAGACAGTGTGGGGGATCTTCTATTACAAGTTTTACAGTATTCTTTTTCTTTTTCATTGAGAAGGTTACCTGAAAGTTGGATCTAATGTATTGAGTCATATTTGGTTGA</canonical_amplicon>
		<polymorphic_amplicon>AAATTGATTATTTGGAAGAACAGTAATCGAAAATTTTGGATTACTGTGGGATCCGTAATAGAAGGACCCCCCGAATTTTCAGCTTTGAGCCTATTTATCTCGATCCCTGTCAAAGATATAAAAAGAGTTGTCAGCTAGTAAATTGTTCAACACAACGTTACGAACATTTTATCAGTTGACACATTTTCGATATTTTGCATTGGAGTCAATAAAAATTTGCAAGAACTAGACAGTGTGGGGGATCTTCTATTACAAGTTTTACAGTATTCTTTTTCTTTTTMATTGAGAAGGTTACCTGAAAGTTGGATCTAATGTATTGAGTCATATTTGGTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3898</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>253977</contig_pos>
        <strand>+</strand>
        <context>GAAAGTTCGT[A/G]AAGAAGCTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTCCTAAAACGTATCAAGTGTGCTTGTGGATACGTTATGAAAGTTCGT</left_flank>
        <right_flank>AAGAAGCTTCTCGAGCTGAATGTGGAGGATGTGGACGGGTATTCTGTCCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGCGACTGCACCAAAAACTCGGAACTCTTTGAGTTGGATGACAGCTGGCAATGCCGTGAATGTCTTTGCAAGCACATCATCGACCAGATCCGTGCCAAATGCATTCCATTAGAAATTCCATTCGTTCTCGGAGAGGGACAATCTGCTTATGACATCCTTCCAGCTATTATCCCACTTCCACTTCTCAACTTTTACACCAAAATCGCAGCCACTGAAACTTTGGCTAATGTCGATGGAGGTGACATTGGAGAGTGTCCATCGTGCAAACAACTGGTTCACATCGACCACAACATCAACGAATTCAAGACTTCAGCTTGCTATTCTTGCGGAATCCATTGGTGTGCAAAATGCGAACGTGAGCCACATTTCCCAATGACTTGCTCATCTTATGCCTCATGGATCGAGAAGTGGGAACAGGAGTACGAACTTCATGTTCTTGAAAAGACCGATTTCCTAAAACGTATCAAGTGTGCTTGTGGATACGTTATGAAAGTTCGTAAAGAAGCTTCTCGAGCTGAATGTGGAGGATGTGGACGGGTATTCTGTCCAAAAACTCTTGAGATGCTCGAAGTTGCCTATTGGTCTCGTGACGAGAAGACTGGAGCAGCAGTCAGAAGACTGGAGACATCGACTGTTTTGCCTGCTATGTGTGTTGAGACGATTGCCGCTTCGAAAAACATCAAGAAAGAGTTCTCTGATGTGTGTGGAGAAGCACGCAAACTTCGATTCTCTGTTTCCAAGAAAACTGAGTTTGAGAAAGCGGTTCGCAAACTCAAAAATACCTACGCTGGCGTAGAAAAACTCCGCGATATCCGTAAAACGGTAAGTTCTGAGAAACCTTTTACTTGAAAGAAATGAAGATCTTTTTCAGGTGTTGATCATCGTCGAAAACGGACTCGCTCATGTATATATCGAGAAGAAACAGGACGGATTGGCTCTCAAATCACAACTTATCCAACTCATGAAACAATGGAATGTGATCGAGGCGGAAATTCAGCA</canonical>
            <polymorphic>CTGCGACTGCACCAAAAACTCGGAACTCTTTGAGTTGGATGACAGCTGGCAATGCCGTGAATGTCTTTGCAAGCACATCATCGACCAGATCCGTGCCAAATGCATTCCATTAGAAATTCCATTCGTTCTCGGAGAGGGACAATCTGCTTATGACATCCTTCCAGCTATTATCCCACTTCCACTTCTCAACTTTTACACCAAAATCGCAGCCACTGAAACTTTGGCTAATGTCGATGGAGGTGACATTGGAGAGTGTCCATCGTGCAAACAACTGGTTCACATCGACCACAACATCAACGAATTCAAGACTTCAGCTTGCTATTCTTGCGGAATCCATTGGTGTGCAAAATGCGAACGTGAGCCACATTTCCCAATGACTTGCTCATCTTATGCCTCATGGATCGAGAAGTGGGAACAGGAGTACGAACTTCATGTTCTTGAAAAGACCGATTTCCTAAAACGTATCAAGTGTGCTTGTGGATACGTTATGAAAGTTCGTRAAGAAGCTTCTCGAGCTGAATGTGGAGGATGTGGACGGGTATTCTGTCCAAAAACTCTTGAGATGCTCGAAGTTGCCTATTGGTCTCGTGACGAGAAGACTGGAGCAGCAGTCAGAAGACTGGAGACATCGACTGTTTTGCCTGCTATGTGTGTTGAGACGATTGCCGCTTCGAAAAACATCAAGAAAGAGTTCTCTGATGTGTGTGGAGAAGCACGCAAACTTCGATTCTCTGTTTCCAAGAAAACTGAGTTTGAGAAAGCGGTTCGCAAACTCAAAAATACCTACGCTGGCGTAGAAAAACTCCGCGATATCCGTAAAACGGTAAGTTCTGAGAAACCTTTTACTTGAAAGAAATGAAGATCTTTTTCAGGTGTTGATCATCGTCGAAAACGGACTCGCTCATGTATATATCGAGAAGAAACAGGACGGATTGGCTCTCAAATCACAACTTATCCAACTCATGAAACAATGGAATGTGATCGAGGCGGAAATTCAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATTTCCTAAAACGTATCAA</pcr_primer_p1>
		<pcr_primer_p2>CAGAGAACTCTTTCTTGATGTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CGATTTCCTAAAACGTATCAAGTGTGCTTGTGGATACGTTATGAAAGTTCGTAAAGAAGCTTCTCGAGCTGAATGTGGAGGATGTGGACGGGTATTCTGTCCAAAAACTCTTGAGATGCTCGAAGTTGCCTATTGGTCTCGTGACGAGAAGACTGGAGCAGCAGTCAGAAGACTGGAGACATCGACTGTTTTGCCTGCTATGTGTGTTGAGACGATTGCCGCTTCGAAAAACATCAAGAAAGAGTTCTCTG</canonical_amplicon>
		<polymorphic_amplicon>CGATTTCCTAAAACGTATCAAGTGTGCTTGTGGATACGTTATGAAAGTTCGTRAAGAAGCTTCTCGAGCTGAATGTGGAGGATGTGGACGGGTATTCTGTCCAAAAACTCTTGAGATGCTCGAAGTTGCCTATTGGTCTCGTGACGAGAAGACTGGAGCAGCAGTCAGAAGACTGGAGACATCGACTGTTTTGCCTGCTATGTGTGTTGAGACGATTGCCGCTTCGAAAAACATCAAGAAAGAGTTCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3899</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>321769</contig_pos>
        <strand></strand>
        <context>TCCGACATTC[G/A]CTATTTTAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATCACTACTCTTATCTTTTTTTATAATTTTAAAAAGTCATTCCGACATTC</left_flank>
        <right_flank>CTATTTTAATCGGGTCACATGATTTTTACGTTTTTGGAAAAAGGCTCAGA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAGGACATGGAATGAATACGTAGATCAGAATTGGTTGAAGGAAATAATTAGAAGGATTGCCTTCGGAAACTACCGTAGACCCTGTAATAGACCCCCGAGGCGTGTCAAATTTGAGCTTATTTAACTTATCTTCTATGCAAGATATCAAATTGTAGTCAACTGACAAAACAATTCTGATAATTTGATTACATTTAAAAAATGATTCTGATTGTGCTTATTGTAAATGCTGGATTTTATTCGAAGTTCTTCTGAATAATGCTCACCAACTTCAAGAAAATCTGAAAAACTAGGTCTAGAATACTGTAAAACCTTGTCCCTCAATTTTCAAACTAGAAATTACTCTTCTTCGTCCCCCTCCCGATCAAAGTATCCAGTTTGATTTTTTCGTCTTTTTTCCCAGAAAAAGTCGTGATTTTAATCGCTTTCTCCGACAGCCTGCATCATCATCACTACTCTTATCTTTTTTTATAATTTTAAAAAGTCATTCCGACATTCGCTATTTTAATCGGGTCACATGATTTTTACGTTTTTGGAAAAAGGCTCAGAAAAACTGAACATTGGTCTGATGGAATAGGAGAATTTCAAGCGGAGCATTGTTTCGGAAAAAAAAAACTTACTTCTTTTTTCCCAAAACTAGGAGGTTTATTATTTTCAGAAACCGTAACATGGACGGTGTTACATATTTTCAGCATATTTTCAGTGCTTAAATTTATTTTGGGTAACATATTGTTGTTCGTTCTTTACCGAATTCAGCATAGGTTCCCGAAAATACCGTAAGCATAGAGCGCCACACCTAACTTTCAACTTCGAGCTCTTATATATCGGTTCCTGTGTAAGATATCAAAAAGTGGCCAACTGACAAACTTTTAACATGATATCAAAAATATTTTGTCAATTAACCACTTTTTGATATCTTTGTTAGGAACCGAGATATAGGGGCTCGAAGTTGAAAGTTAGAGGTGACACTCTATTAGAGTTTTCACGGTATATTTCAAG</canonical>
            <polymorphic>AAAAAAGGACATGGAATGAATACGTAGATCAGAATTGGTTGAAGGAAATAATTAGAAGGATTGCCTTCGGAAACTACCGTAGACCCTGTAATAGACCCCCGAGGCGTGTCAAATTTGAGCTTATTTAACTTATCTTCTATGCAAGATATCAAATTGTAGTCAACTGACAAAACAATTCTGATAATTTGATTACATTTAAAAAATGATTCTGATTGTGCTTATTGTAAATGCTGGATTTTATTCGAAGTTCTTCTGAATAATGCTCACCAACTTCAAGAAAATCTGAAAAACTAGGTCTAGAATACTGTAAAACCTTGTCCCTCAATTTTCAAACTAGAAATTACTCTTCTTCGTCCCCCTCCCGATCAAAGTATCCAGTTTGATTTTTTCGTCTTTTTTCCCAGAAAAAGTCGTGATTTTAATCGCTTTCTCCGACAGCCTGCATCATCATCACTACTCTTATCTTTTTTTATAATTTTAAAAAGTCATTCCGACATTCRCTATTTTAATCGGGTCACATGATTTTTACGTTTTTGGAAAAAGGCTCAGAAAAACTGAACATTGGTCTGATGGAATAGGAGAATTTCAAGCGGAGCATTGTTTCGGAAAAAAAAAACTTACTTCTTTTTTCCCAAAACTAGGAGGTTTATTATTTTCAGAAACCGTAACATGGACGGTGTTACATATTTTCAGCATATTTTCAGTGCTTAAATTTATTTTGGGTAACATATTGTTGTTCGTTCTTTACCGAATTCAGCATAGGTTCCCGAAAATACCGTAAGCATAGAGCGCCACACCTAACTTTCAACTTCGAGCTCTTATATATCGGTTCCTGTGTAAGATATCAAAAAGTGGCCAACTGACAAACTTTTAACATGATATCAAAAATATTTTGTCAATTAACCACTTTTTGATATCTTTGTTAGGAACCGAGATATAGGGGCTCGAAGTTGAAAGTTAGAGGTGACACTCTATTAGAGTTTTCACGGTATATTTCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGCATCATCATCACTACTCTTA</pcr_primer_p1>
		<pcr_primer_p2>AAATATGTAACACCGTCCATGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGCATCATCATCACTACTCTTATCTTTTTTTATAATTTTAAAAAGTCATTCCGACATTCGCTATTTTAATCGGGTCACATGATTTTTACGTTTTTGGAAAAAGGCTCAGAAAAACTGAACATTGGTCTGATGGAATAGGAGAATTTCAAGCGGAGCATTGTTTCGGAAAAAAAAAACTTACTTCTTTTTTCCCAAAACTAGGAGGTTTATTATTTTCAGAAACCGTAACATGGACGGTGTTACATATTT</canonical_amplicon>
		<polymorphic_amplicon>CTGCATCATCATCACTACTCTTATCTTTTTTTATAATTTTAAAAAGTCATTCCGACATTCRCTATTTTAATCGGGTCACATGATTTTTACGTTTTTGGAAAAAGGCTCAGAAAAACTGAACATTGGTCTGATGGAATAGGAGAATTTCAAGCGGAGCATTGTTTCGGAAAAAAAAAACTTACTTCTTTTTTCCCAAAACTAGGAGGTTTATTATTTTCAGAAACCGTAACATGGACGGTGTTACATATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3900</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>321875</contig_pos>
        <strand></strand>
        <context>CATTGTTTCG[G/A]AAAAAAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGAACATTGGTCTGATGGAATAGGAGAATTTCAAGCGGAGCATTGTTTCG</left_flank>
        <right_flank>AAAAAAAAAACTTACTTCTTTTTTCCCAAAACTAGGAGGTTTATTATTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTCAAATTTGAGCTTATTTAACTTATCTTCTATGCAAGATATCAAATTGTAGTCAACTGACAAAACAATTCTGATAATTTGATTACATTTAAAAAATGATTCTGATTGTGCTTATTGTAAATGCTGGATTTTATTCGAAGTTCTTCTGAATAATGCTCACCAACTTCAAGAAAATCTGAAAAACTAGGTCTAGAATACTGTAAAACCTTGTCCCTCAATTTTCAAACTAGAAATTACTCTTCTTCGTCCCCCTCCCGATCAAAGTATCCAGTTTGATTTTTTCGTCTTTTTTCCCAGAAAAAGTCGTGATTTTAATCGCTTTCTCCGACAGCCTGCATCATCATCACTACTCTTATCTTTTTTTATAATTTTAAAAAGTCATTCCGACATTCGCTATTTTAATCGGGTCACATGATTTTTACGTTTTTGGAAAAAGGCTCAGAAAAACTGAACATTGGTCTGATGGAATAGGAGAATTTCAAGCGGAGCATTGTTTCGGAAAAAAAAAACTTACTTCTTTTTTCCCAAAACTAGGAGGTTTATTATTTTCAGAAACCGTAACATGGACGGTGTTACATATTTTCAGCATATTTTCAGTGCTTAAATTTATTTTGGGTAACATATTGTTGTTCGTTCTTTACCGAATTCAGCATAGGTTCCCGAAAATACCGTAAGCATAGAGCGCCACACCTAACTTTCAACTTCGAGCTCTTATATATCGGTTCCTGTGTAAGATATCAAAAAGTGGCCAACTGACAAACTTTTAACATGATATCAAAAATATTTTGTCAATTAACCACTTTTTGATATCTTTGTTAGGAACCGAGATATAGGGGCTCGAAGTTGAAAGTTAGAGGTGACACTCTATTAGAGTTTTCACGGTATATTTCAAGCCTCCTGAAAATCTTTGAATCTTCCTGGGCCACTAACAATAAGCTTCCTCTAGCTCATACAAAGACTTCTCTTCTACGCCTTGGTTCAAGAAACAAGCACGCTCCC</canonical>
            <polymorphic>TGTCAAATTTGAGCTTATTTAACTTATCTTCTATGCAAGATATCAAATTGTAGTCAACTGACAAAACAATTCTGATAATTTGATTACATTTAAAAAATGATTCTGATTGTGCTTATTGTAAATGCTGGATTTTATTCGAAGTTCTTCTGAATAATGCTCACCAACTTCAAGAAAATCTGAAAAACTAGGTCTAGAATACTGTAAAACCTTGTCCCTCAATTTTCAAACTAGAAATTACTCTTCTTCGTCCCCCTCCCGATCAAAGTATCCAGTTTGATTTTTTCGTCTTTTTTCCCAGAAAAAGTCGTGATTTTAATCGCTTTCTCCGACAGCCTGCATCATCATCACTACTCTTATCTTTTTTTATAATTTTAAAAAGTCATTCCGACATTCGCTATTTTAATCGGGTCACATGATTTTTACGTTTTTGGAAAAAGGCTCAGAAAAACTGAACATTGGTCTGATGGAATAGGAGAATTTCAAGCGGAGCATTGTTTCGRAAAAAAAAAACTTACTTCTTTTTTCCCAAAACTAGGAGGTTTATTATTTTCAGAAACCGTAACATGGACGGTGTTACATATTTTCAGCATATTTTCAGTGCTTAAATTTATTTTGGGTAACATATTGTTGTTCGTTCTTTACCGAATTCAGCATAGGTTCCCGAAAATACCGTAAGCATAGAGCGCCACACCTAACTTTCAACTTCGAGCTCTTATATATCGGTTCCTGTGTAAGATATCAAAAAGTGGCCAACTGACAAACTTTTAACATGATATCAAAAATATTTTGTCAATTAACCACTTTTTGATATCTTTGTTAGGAACCGAGATATAGGGGCTCGAAGTTGAAAGTTAGAGGTGACACTCTATTAGAGTTTTCACGGTATATTTCAAGCCTCCTGAAAATCTTTGAATCTTCCTGGGCCACTAACAATAAGCTTCCTCTAGCTCATACAAAGACTTCTCTTCTACGCCTTGGTTCAAGAAACAAGCACGCTCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>448 149 73 59 56 53 44 37 31 30 20</canonical_bands>
                <polymorphic_bands>448 149 90 73 59 56 44 31 30 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGCATCATCATCACTACTCTTA</pcr_primer_p1>
		<pcr_primer_p2>AAATATGTAACACCGTCCATGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGCATCATCATCACTACTCTTATCTTTTTTTATAATTTTAAAAAGTCATTCCGACATTCGCTATTTTAATCGGGTCACATGATTTTTACGTTTTTGGAAAAAGGCTCAGAAAAACTGAACATTGGTCTGATGGAATAGGAGAATTTCAAGCGGAGCATTGTTTCGGAAAAAAAAAACTTACTTCTTTTTTCCCAAAACTAGGAGGTTTATTATTTTCAGAAACCGTAACATGGACGGTGTTACATATTT</canonical_amplicon>
		<polymorphic_amplicon>CTGCATCATCATCACTACTCTTATCTTTTTTTATAATTTTAAAAAGTCATTCCGACATTCGCTATTTTAATCGGGTCACATGATTTTTACGTTTTTGGAAAAAGGCTCAGAAAAACTGAACATTGGTCTGATGGAATAGGAGAATTTCAAGCGGAGCATTGTTTCGRAAAAAAAAAACTTACTTCTTTTTTCCCAAAACTAGGAGGTTTATTATTTTCAGAAACCGTAACATGGACGGTGTTACATATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3901</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>321988</contig_pos>
        <strand></strand>
        <context>TAAATTTATT[T/C]TGGGTAACAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CATGGACGGTGTTACATATTTTCAGCATATTTTCAGTGCTTAAATTTATT</left_flank>
        <right_flank>TGGGTAACATATTGTTGTTCGTTCTTTACCGAATTCAGCATAGGTTCCCG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTGTAAATGCTGGATTTTATTCGAAGTTCTTCTGAATAATGCTCACCAACTTCAAGAAAATCTGAAAAACTAGGTCTAGAATACTGTAAAACCTTGTCCCTCAATTTTCAAACTAGAAATTACTCTTCTTCGTCCCCCTCCCGATCAAAGTATCCAGTTTGATTTTTTCGTCTTTTTTCCCAGAAAAAGTCGTGATTTTAATCGCTTTCTCCGACAGCCTGCATCATCATCACTACTCTTATCTTTTTTTATAATTTTAAAAAGTCATTCCGACATTCGCTATTTTAATCGGGTCACATGATTTTTACGTTTTTGGAAAAAGGCTCAGAAAAACTGAACATTGGTCTGATGGAATAGGAGAATTTCAAGCGGAGCATTGTTTCGGAAAAAAAAAACTTACTTCTTTTTTCCCAAAACTAGGAGGTTTATTATTTTCAGAAACCGTAACATGGACGGTGTTACATATTTTCAGCATATTTTCAGTGCTTAAATTTATTTTGGGTAACATATTGTTGTTCGTTCTTTACCGAATTCAGCATAGGTTCCCGAAAATACCGTAAGCATAGAGCGCCACACCTAACTTTCAACTTCGAGCTCTTATATATCGGTTCCTGTGTAAGATATCAAAAAGTGGCCAACTGACAAACTTTTAACATGATATCAAAAATATTTTGTCAATTAACCACTTTTTGATATCTTTGTTAGGAACCGAGATATAGGGGCTCGAAGTTGAAAGTTAGAGGTGACACTCTATTAGAGTTTTCACGGTATATTTCAAGCCTCCTGAAAATCTTTGAATCTTCCTGGGCCACTAACAATAAGCTTCCTCTAGCTCATACAAAGACTTCTCTTCTACGCCTTGGTTCAAGAAACAAGCACGCTCCCCTCTTCATCTCCTCCTCAGCTATTGATTCTGCAGACAATATTCGTGATCTAGGACTTATTACCGACTCCAAACTTAAGTTCACCCAACACATAAACAAATCGGTTGCTGTTTC</canonical>
            <polymorphic>TATTGTAAATGCTGGATTTTATTCGAAGTTCTTCTGAATAATGCTCACCAACTTCAAGAAAATCTGAAAAACTAGGTCTAGAATACTGTAAAACCTTGTCCCTCAATTTTCAAACTAGAAATTACTCTTCTTCGTCCCCCTCCCGATCAAAGTATCCAGTTTGATTTTTTCGTCTTTTTTCCCAGAAAAAGTCGTGATTTTAATCGCTTTCTCCGACAGCCTGCATCATCATCACTACTCTTATCTTTTTTTATAATTTTAAAAAGTCATTCCGACATTCGCTATTTTAATCGGGTCACATGATTTTTACGTTTTTGGAAAAAGGCTCAGAAAAACTGAACATTGGTCTGATGGAATAGGAGAATTTCAAGCGGAGCATTGTTTCGGAAAAAAAAAACTTACTTCTTTTTTCCCAAAACTAGGAGGTTTATTATTTTCAGAAACCGTAACATGGACGGTGTTACATATTTTCAGCATATTTTCAGTGCTTAAATTTATTYTGGGTAACATATTGTTGTTCGTTCTTTACCGAATTCAGCATAGGTTCCCGAAAATACCGTAAGCATAGAGCGCCACACCTAACTTTCAACTTCGAGCTCTTATATATCGGTTCCTGTGTAAGATATCAAAAAGTGGCCAACTGACAAACTTTTAACATGATATCAAAAATATTTTGTCAATTAACCACTTTTTGATATCTTTGTTAGGAACCGAGATATAGGGGCTCGAAGTTGAAAGTTAGAGGTGACACTCTATTAGAGTTTTCACGGTATATTTCAAGCCTCCTGAAAATCTTTGAATCTTCCTGGGCCACTAACAATAAGCTTCCTCTAGCTCATACAAAGACTTCTCTTCTACGCCTTGGTTCAAGAAACAAGCACGCTCCCCTCTTCATCTCCTCCTCAGCTATTGATTCTGCAGACAATATTCGTGATCTAGGACTTATTACCGACTCCAAACTTAAGTTCACCCAACACATAAACAAATCGGTTGCTGTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTGAACATTGGTCTGA</pcr_primer_p1>
		<pcr_primer_p2>GCTCTATGCTTACGGTATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTGAACATTGGTCTGATGGAATAGGAGAATTTCAAGCGGAGCATTGTTTCGGAAAAAAAAAACTTACTTCTTTTTTCCCAAAACTAGGAGGTTTATTATTTTCAGAAACCGTAACATGGACGGTGTTACATATTTTCAGCATATTTTCAGTGCTTAAATTTATTTTGGGTAACATATTGTTGTTCGTTCTTTACCGAATTCAGCATAGGTTCCCGAAAATACCGTAAGCATAGAGC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTGAACATTGGTCTGATGGAATAGGAGAATTTCAAGCGGAGCATTGTTTCGGAAAAAAAAAACTTACTTCTTTTTTCCCAAAACTAGGAGGTTTATTATTTTCAGAAACCGTAACATGGACGGTGTTACATATTTTCAGCATATTTTCAGTGCTTAAATTTATTYTGGGTAACATATTGTTGTTCGTTCTTTACCGAATTCAGCATAGGTTCCCGAAAATACCGTAAGCATAGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3902</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>323802</contig_pos>
        <strand>+</strand>
        <context>TGATAAGGAT[A/G]AAGATGTAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCGAATGAAAATGGATGTATGTGGATACTGTAACCGTTTGATAAGGAT</left_flank>
        <right_flank>AAGATGTAATTGATACATCATTCTGAACGACAACAACTTTTGAAGATTGT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACCACCATCAAACCTACGAAACCATTGAACAGTTGGACAACCTCGTCTCGTGGGTTAAAAAAAGTCAATGGTTGTCCAATTCTCTTTGAAGAACCAATGAAACGCATGTGAACAACACATGAGTCTTCTTTAAAAATTGAGTCTGGCGCGGCGTCTTCCCCTTCAATCGGCGCCCATCTTGTACATCATCACACATCGCGAAAAGTCTGCGTCTCGTTATCATTAATCAGTATCTTTATTTAAAGAGCGTCGTCGTTACACGAGGGGGGAATTCCTCTGGCATGTCTGCAGTCTCTTGTTCTCTAATTGACCCGCTTATCTTCCCGTTTCTTTAAAGATTGTCCATATGGAAACAGTGTAGAAGATGAAGAGAACAGGGAGTAGACACATCTTTTGCAGAAAAAAGAATTGAGAGGGAATCGTCACGTTAGCATGATCTTTTGAGACTAATCGAATGAAAATGGATGTATGTGGATACTGTAACCGTTTGATAAGGATAAAGATGTAATTGATACATCATTCTGAACGACAACAACTTTTGAAGATTGTGAAGGGAAAGGAGAACGTGTTTAGTGGTTTAGCGGTTTACATTCTATGTATAGAATACGAAGGAAAATGGAGACAAAGCTGGAACACTACAATCACTCTCAGTGATCTTTACAACTGGTCTCAGCTATAGTTTCGAGTCCGGGTTACGGTAGTAAAAAAGGATCCAAACACAGCAACCCCCTTAAAGAATTTCGCCAATTTTTCCCATTTCGATTTTTCTGAAAAAAAACGGAGCAGAAGGGTTTTAGACTTCGAGAACAAACAATTTTTGAGAATTCGAAAACCAACAATGGACACCACTACAATAATCTTGAGCTTGACTCTCATTTTAGATCAACAATTGCAATTTACTGCAACTTTATGTTCTTGATTCTGAATATTTTAAGCCGTTTAGATCTAAAACTCCTCATTTCATATATAAGCCCCACCCGAACGAATTCTTCACAGTAC</canonical>
            <polymorphic>GACCACCATCAAACCTACGAAACCATTGAACAGTTGGACAACCTCGTCTCGTGGGTTAAAAAAAGTCAATGGTTGTCCAATTCTCTTTGAAGAACCAATGAAACGCATGTGAACAACACATGAGTCTTCTTTAAAAATTGAGTCTGGCGCGGCGTCTTCCCCTTCAATCGGCGCCCATCTTGTACATCATCACACATCGCGAAAAGTCTGCGTCTCGTTATCATTAATCAGTATCTTTATTTAAAGAGCGTCGTCGTTACACGAGGGGGGAATTCCTCTGGCATGTCTGCAGTCTCTTGTTCTCTAATTGACCCGCTTATCTTCCCGTTTCTTTAAAGATTGTCCATATGGAAACAGTGTAGAAGATGAAGAGAACAGGGAGTAGACACATCTTTTGCAGAAAAAAGAATTGAGAGGGAATCGTCACGTTAGCATGATCTTTTGAGACTAATCGAATGAAAATGGATGTATGTGGATACTGTAACCGTTTGATAAGGATRAAGATGTAATTGATACATCATTCTGAACGACAACAACTTTTGAAGATTGTGAAGGGAAAGGAGAACGTGTTTAGTGGTTTAGCGGTTTACATTCTATGTATAGAATACGAAGGAAAATGGAGACAAAGCTGGAACACTACAATCACTCTCAGTGATCTTTACAACTGGTCTCAGCTATAGTTTCGAGTCCGGGTTACGGTAGTAAAAAAGGATCCAAACACAGCAACCCCCTTAAAGAATTTCGCCAATTTTTCCCATTTCGATTTTTCTGAAAAAAAACGGAGCAGAAGGGTTTTAGACTTCGAGAACAAACAATTTTTGAGAATTCGAAAACCAACAATGGACACCACTACAATAATCTTGAGCTTGACTCTCATTTTAGATCAACAATTGCAATTTACTGCAACTTTATGTTCTTGATTCTGAATATTTTAAGCCGTTTAGATCTAAAACTCCTCATTTCATATATAAGCCCCACCCGAACGAATTCTTCACAGTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAACAGTGTAGAAGATGAAGA</pcr_primer_p1>
		<pcr_primer_p2>ACATAGAATGTAAACCGCTAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAAACAGTGTAGAAGATGAAGAGAACAGGGAGTAGACACATCTTTTGCAGAAAAAAGAATTGAGAGGGAATCGTCACGTTAGCATGATCTTTTGAGACTAATCGAATGAAAATGGATGTATGTGGATACTGTAACCGTTTGATAAGGATAAAGATGTAATTGATACATCATTCTGAACGACAACAACTTTTGAAGATTGTGAAGGGAAAGGAGAACGTGTTTAGTGGTTTAGCGGTTTACATTCTATGT</canonical_amplicon>
		<polymorphic_amplicon>GGAAACAGTGTAGAAGATGAAGAGAACAGGGAGTAGACACATCTTTTGCAGAAAAAAGAATTGAGAGGGAATCGTCACGTTAGCATGATCTTTTGAGACTAATCGAATGAAAATGGATGTATGTGGATACTGTAACCGTTTGATAAGGATRAAGATGTAATTGATACATCATTCTGAACGACAACAACTTTTGAAGATTGTGAAGGGAAAGGAGAACGTGTTTAGTGGTTTAGCGGTTTACATTCTATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3903</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>331728</contig_pos>
        <strand>+</strand>
        <context>ACTCAATGAG[C/T]TTTGCCAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCTTTAGGAGTAGTTCGCCGTGCGGTAACTCTCCCACAGACTCAATGAG</left_flank>
        <right_flank>TTTGCCAAGATGATTCCATCAGAGTAATCTGCGAATCCTTTGGCTTGATA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAATTCCAATTCGGCCATCGACACTACCTTCTCCCAAAGAGAATCGCCAGAATACGCACTAATTGGTGTTGCGTTTGGTATGCACGATTTCCAAATTTTATCCAAAAGGATACCGTCGGTTAACGAATCCAAATCCAACACTTCCTGCTCCAGTTGCCTTCCGTATAACTTGCACGTCTTCAATACATCGGAGGACATGTTATCATGTACAGCAGAACGCCGCTTCTTTTTCGGTGTCTCGTCAACAGCTCTGGAAATCTTCACTCGTTTCTCTCTGGCTACTCGAACGCCAACAATCGACCAGAGAATAGCCAAGATTGCGTCTTTCGTTCCACCAACAATCGCTGTCGGTGTCACATCTTCAGTGGGAATTCCGATAGATGTCATTTCTTGAAGTACGATTTTTACGTTGTTGATCTTCCGAATACGGTCACCAGCGGGATCACGGAGCTTTAGGAGTAGTTCGCCGTGCGGTAACTCTCCCACAGACTCAATGAGCTTTGCCAAGATGATTCCATCAGAGTAATCTGCGAATCCTTTGGCTTGATAGTCGTAATTATCGAAGAAAGACTGTTTGTATGATGGAGTGAATCCAATTTTGGCAAAAGCCTTTTTAAATGTCAGCGAGCTTCCAGTAAGCAACTCTTTCGTGAGTCCACTGAACATATCATCCAAACATTTGTATTGAGAAGATTTAGTGAAAATTCTTGTCAGATTTGGAATCACTCGATGCGCATTTGCCGTCTCAATCAAAAACATCAGCTTCATTGTGGTTTCAAGAAAATGACGATGAAGAGCCTCCCTGCCTTGTTTGGTGATGATTGGCTTGCCAGATCCTTGAGCAAACTTTTTGTTCTTGAGCATGCTTGGATTCGAAAATACGCGTTCGATGAAAAACTGGGACAATGCACGAATCATGTACTTCGGTTGGGCATCGATTCGAGCTCCGAAAATCGCTTCTATTGTCACTTTGAGCCAAGCGGGGTGAAAGCAGAGGAA</canonical>
            <polymorphic>CTAATTCCAATTCGGCCATCGACACTACCTTCTCCCAAAGAGAATCGCCAGAATACGCACTAATTGGTGTTGCGTTTGGTATGCACGATTTCCAAATTTTATCCAAAAGGATACCGTCGGTTAACGAATCCAAATCCAACACTTCCTGCTCCAGTTGCCTTCCGTATAACTTGCACGTCTTCAATACATCGGAGGACATGTTATCATGTACAGCAGAACGCCGCTTCTTTTTCGGTGTCTCGTCAACAGCTCTGGAAATCTTCACTCGTTTCTCTCTGGCTACTCGAACGCCAACAATCGACCAGAGAATAGCCAAGATTGCGTCTTTCGTTCCACCAACAATCGCTGTCGGTGTCACATCTTCAGTGGGAATTCCGATAGATGTCATTTCTTGAAGTACGATTTTTACGTTGTTGATCTTCCGAATACGGTCACCAGCGGGATCACGGAGCTTTAGGAGTAGTTCGCCGTGCGGTAACTCTCCCACAGACTCAATGAGYTTTGCCAAGATGATTCCATCAGAGTAATCTGCGAATCCTTTGGCTTGATAGTCGTAATTATCGAAGAAAGACTGTTTGTATGATGGAGTGAATCCAATTTTGGCAAAAGCCTTTTTAAATGTCAGCGAGCTTCCAGTAAGCAACTCTTTCGTGAGTCCACTGAACATATCATCCAAACATTTGTATTGAGAAGATTTAGTGAAAATTCTTGTCAGATTTGGAATCACTCGATGCGCATTTGCCGTCTCAATCAAAAACATCAGCTTCATTGTGGTTTCAAGAAAATGACGATGAAGAGCCTCCCTGCCTTGTTTGGTGATGATTGGCTTGCCAGATCCTTGAGCAAACTTTTTGTTCTTGAGCATGCTTGGATTCGAAAATACGCGTTCGATGAAAAACTGGGACAATGCACGAATCATGTACTTCGGTTGGGCATCGATTCGAGCTCCGAAAATCGCTTCTATTGTCACTTTGAGCCAAGCGGGGTGAAAGCAGAGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>249 202 182 134 130 55 48</canonical_bands>
                <polymorphic_bands>249 202 182 178 134 55</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>234 139 134 119 66 48 44 35 33 31 30 28 24 20 15</canonical_bands>
                <polymorphic_bands>234 139 134 119 92 66 35 33 31 30 28 24 20 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACGATTTTTACGTTGTTGATCT</pcr_primer_p1>
		<pcr_primer_p2>AGAGTTGCTTACTGGAAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACGATTTTTACGTTGTTGATCTTCCGAATACGGTCACCAGCGGGATCACGGAGCTTTAGGAGTAGTTCGCCGTGCGGTAACTCTCCCACAGACTCAATGAGCTTTGCCAAGATGATTCCATCAGAGTAATCTGCGAATCCTTTGGCTTGATAGTCGTAATTATCGAAGAAAGACTGTTTGTATGATGGAGTGAATCCAATTTTGGCAAAAGCCTTTTTAAATGTCAGCGAGCTTCCAGTAAGCAACTCT</canonical_amplicon>
		<polymorphic_amplicon>TACGATTTTTACGTTGTTGATCTTCCGAATACGGTCACCAGCGGGATCACGGAGCTTTAGGAGTAGTTCGCCGTGCGGTAACTCTCCCACAGACTCAATGAGYTTTGCCAAGATGATTCCATCAGAGTAATCTGCGAATCCTTTGGCTTGATAGTCGTAATTATCGAAGAAAGACTGTTTGTATGATGGAGTGAATCCAATTTTGGCAAAAGCCTTTTTAAATGTCAGCGAGCTTCCAGTAAGCAACTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3904</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>331509</contig_pos>
        <strand>+</strand>
        <context>TCTCTCTGGC[C/T]ACTCGAACGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCGGTGTCTCGTCAACAGCTCTGGAAATCTTCACTCGTTTCTCTCTGGC</left_flank>
        <right_flank>ACTCGAACGCCAACAATCGACCAGAGAATAGCCAAGATTGCGTCTTTCGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACGAGCACTTGTTGAACGATGAAGAAGAGCTTCGGTATATTCTGAAAATCAACGCTATTTTATGCATTTGACGACAATCCTCACCTTTCTCTCCAAATATAGCTTCCACTGTTTCTGAATGATTGCTGCTTTTTCATGATACATTTTAACAGTTTGCATGCGGTCTAGGAACATCTTCACGAAAAGTGCTATGCTTTGATCTAGCCCACGATTAATTCCTAATTCCAATTCGGCCATCGACACTACCTTCTCCCAAAGAGAATCGCCAGAATACGCACTAATTGGTGTTGCGTTTGGTATGCACGATTTCCAAATTTTATCCAAAAGGATACCGTCGGTTAACGAATCCAAATCCAACACTTCCTGCTCCAGTTGCCTTCCGTATAACTTGCACGTCTTCAATACATCGGAGGACATGTTATCATGTACAGCAGAACGCCGCTTCTTTTTCGGTGTCTCGTCAACAGCTCTGGAAATCTTCACTCGTTTCTCTCTGGCTACTCGAACGCCAACAATCGACCAGAGAATAGCCAAGATTGCGTCTTTCGTTCCACCAACAATCGCTGTCGGTGTCACATCTTCAGTGGGAATTCCGATAGATGTCATTTCTTGAAGTACGATTTTTACGTTGTTGATCTTCCGAATACGGTCACCAGCGGGATCACGGAGCTTTAGGAGTAGTTCGCCGTGCGGTAACTCTCCCACAGACTCAATGAGCTTTGCCAAGATGATTCCATCAGAGTAATCTGCGAATCCTTTGGCTTGATAGTCGTAATTATCGAAGAAAGACTGTTTGTATGATGGAGTGAATCCAATTTTGGCAAAAGCCTTTTTAAATGTCAGCGAGCTTCCAGTAAGCAACTCTTTCGTGAGTCCACTGAACATATCATCCAAACATTTGTATTGAGAAGATTTAGTGAAAATTCTTGTCAGATTTGGAATCACTCGATGCGCATTTGCCGTCTCAATCAAAAACATCAGCTTCATTGTGGTTTCAAG</canonical>
            <polymorphic>AACGAGCACTTGTTGAACGATGAAGAAGAGCTTCGGTATATTCTGAAAATCAACGCTATTTTATGCATTTGACGACAATCCTCACCTTTCTCTCCAAATATAGCTTCCACTGTTTCTGAATGATTGCTGCTTTTTCATGATACATTTTAACAGTTTGCATGCGGTCTAGGAACATCTTCACGAAAAGTGCTATGCTTTGATCTAGCCCACGATTAATTCCTAATTCCAATTCGGCCATCGACACTACCTTCTCCCAAAGAGAATCGCCAGAATACGCACTAATTGGTGTTGCGTTTGGTATGCACGATTTCCAAATTTTATCCAAAAGGATACCGTCGGTTAACGAATCCAAATCCAACACTTCCTGCTCCAGTTGCCTTCCGTATAACTTGCACGTCTTCAATACATCGGAGGACATGTTATCATGTACAGCAGAACGCCGCTTCTTTTTCGGTGTCTCGTCAACAGCTCTGGAAATCTTCACTCGTTTCTCTCTGGCYACTCGAACGCCAACAATCGACCAGAGAATAGCCAAGATTGCGTCTTTCGTTCCACCAACAATCGCTGTCGGTGTCACATCTTCAGTGGGAATTCCGATAGATGTCATTTCTTGAAGTACGATTTTTACGTTGTTGATCTTCCGAATACGGTCACCAGCGGGATCACGGAGCTTTAGGAGTAGTTCGCCGTGCGGTAACTCTCCCACAGACTCAATGAGCTTTGCCAAGATGATTCCATCAGAGTAATCTGCGAATCCTTTGGCTTGATAGTCGTAATTATCGAAGAAAGACTGTTTGTATGATGGAGTGAATCCAATTTTGGCAAAAGCCTTTTTAAATGTCAGCGAGCTTCCAGTAAGCAACTCTTTCGTGAGTCCACTGAACATATCATCCAAACATTTGTATTGAGAAGATTTAGTGAAAATTCTTGTCAGATTTGGAATCACTCGATGCGCATTTGCCGTCTCAATCAAAAACATCAGCTTCATTGTGGTTTCAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>234 139 134 102 73 66 48 44 33 30 30 29 20 18</canonical_bands>
                <polymorphic_bands>234 139 134 102 73 66 63 48 44 30 29 20 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAACTTGCACGTCTTCAATACA</pcr_primer_p1>
		<pcr_primer_p2>CAACAACGTAAAAATCGTACTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAACTTGCACGTCTTCAATACATCGGAGGACATGTTATCATGTACAGCAGAACGCCGCTTCTTTTTCGGTGTCTCGTCAACAGCTCTGGAAATCTTCACTCGTTTCTCTCTGGCTACTCGAACGCCAACAATCGACCAGAGAATAGCCAAGATTGCGTCTTTCGTTCCACCAACAATCGCTGTCGGTGTCACATCTTCAGTGGGAATTCCGATAGATGTCATTTCTTGAAGTACGATTTTTACGTTGTTG</canonical_amplicon>
		<polymorphic_amplicon>TAACTTGCACGTCTTCAATACATCGGAGGACATGTTATCATGTACAGCAGAACGCCGCTTCTTTTTCGGTGTCTCGTCAACAGCTCTGGAAATCTTCACTCGTTTCTCTCTGGCYACTCGAACGCCAACAATCGACCAGAGAATAGCCAAGATTGCGTCTTTCGTTCCACCAACAATCGCTGTCGGTGTCACATCTTCAGTGGGAATTCCGATAGATGTCATTTCTTGAAGTACGATTTTTACGTTGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3905</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>331488</contig_pos>
        <strand>+</strand>
        <context>CTCTGGAAAT[C/T]TTCACTCGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAGCAGAACGCCGCTTCTTTTTCGGTGTCTCGTCAACAGCTCTGGAAAT</left_flank>
        <right_flank>TTCACTCGTTTCTCTCTGGCTACTCGAACGCCAACAATCGACCAGAGAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATCGTTGCTGACGATGGTTAACGAGCACTTGTTGAACGATGAAGAAGAGCTTCGGTATATTCTGAAAATCAACGCTATTTTATGCATTTGACGACAATCCTCACCTTTCTCTCCAAATATAGCTTCCACTGTTTCTGAATGATTGCTGCTTTTTCATGATACATTTTAACAGTTTGCATGCGGTCTAGGAACATCTTCACGAAAAGTGCTATGCTTTGATCTAGCCCACGATTAATTCCTAATTCCAATTCGGCCATCGACACTACCTTCTCCCAAAGAGAATCGCCAGAATACGCACTAATTGGTGTTGCGTTTGGTATGCACGATTTCCAAATTTTATCCAAAAGGATACCGTCGGTTAACGAATCCAAATCCAACACTTCCTGCTCCAGTTGCCTTCCGTATAACTTGCACGTCTTCAATACATCGGAGGACATGTTATCATGTACAGCAGAACGCCGCTTCTTTTTCGGTGTCTCGTCAACAGCTCTGGAAATCTTCACTCGTTTCTCTCTGGCTACTCGAACGCCAACAATCGACCAGAGAATAGCCAAGATTGCGTCTTTCGTTCCACCAACAATCGCTGTCGGTGTCACATCTTCAGTGGGAATTCCGATAGATGTCATTTCTTGAAGTACGATTTTTACGTTGTTGATCTTCCGAATACGGTCACCAGCGGGATCACGGAGCTTTAGGAGTAGTTCGCCGTGCGGTAACTCTCCCACAGACTCAATGAGCTTTGCCAAGATGATTCCATCAGAGTAATCTGCGAATCCTTTGGCTTGATAGTCGTAATTATCGAAGAAAGACTGTTTGTATGATGGAGTGAATCCAATTTTGGCAAAAGCCTTTTTAAATGTCAGCGAGCTTCCAGTAAGCAACTCTTTCGTGAGTCCACTGAACATATCATCCAAACATTTGTATTGAGAAGATTTAGTGAAAATTCTTGTCAGATTTGGAATCACTCGATGCGCATTTGCCGTCTCAATCAAAAACAT</canonical>
            <polymorphic>GCATCGTTGCTGACGATGGTTAACGAGCACTTGTTGAACGATGAAGAAGAGCTTCGGTATATTCTGAAAATCAACGCTATTTTATGCATTTGACGACAATCCTCACCTTTCTCTCCAAATATAGCTTCCACTGTTTCTGAATGATTGCTGCTTTTTCATGATACATTTTAACAGTTTGCATGCGGTCTAGGAACATCTTCACGAAAAGTGCTATGCTTTGATCTAGCCCACGATTAATTCCTAATTCCAATTCGGCCATCGACACTACCTTCTCCCAAAGAGAATCGCCAGAATACGCACTAATTGGTGTTGCGTTTGGTATGCACGATTTCCAAATTTTATCCAAAAGGATACCGTCGGTTAACGAATCCAAATCCAACACTTCCTGCTCCAGTTGCCTTCCGTATAACTTGCACGTCTTCAATACATCGGAGGACATGTTATCATGTACAGCAGAACGCCGCTTCTTTTTCGGTGTCTCGTCAACAGCTCTGGAAATYTTCACTCGTTTCTCTCTGGCTACTCGAACGCCAACAATCGACCAGAGAATAGCCAAGATTGCGTCTTTCGTTCCACCAACAATCGCTGTCGGTGTCACATCTTCAGTGGGAATTCCGATAGATGTCATTTCTTGAAGTACGATTTTTACGTTGTTGATCTTCCGAATACGGTCACCAGCGGGATCACGGAGCTTTAGGAGTAGTTCGCCGTGCGGTAACTCTCCCACAGACTCAATGAGCTTTGCCAAGATGATTCCATCAGAGTAATCTGCGAATCCTTTGGCTTGATAGTCGTAATTATCGAAGAAAGACTGTTTGTATGATGGAGTGAATCCAATTTTGGCAAAAGCCTTTTTAAATGTCAGCGAGCTTCCAGTAAGCAACTCTTTCGTGAGTCCACTGAACATATCATCCAAACATTTGTATTGAGAAGATTTAGTGAAAATTCTTGTCAGATTTGGAATCACTCGATGCGCATTTGCCGTCTCAATCAAAAACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACTTGCACGTCTTCAATACA</pcr_primer_p1>
		<pcr_primer_p2>CAACAACGTAAAAATCGTACTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAACTTGCACGTCTTCAATACATCGGAGGACATGTTATCATGTACAGCAGAACGCCGCTTCTTTTTCGGTGTCTCGTCAACAGCTCTGGAAATCTTCACTCGTTTCTCTCTGGCTACTCGAACGCCAACAATCGACCAGAGAATAGCCAAGATTGCGTCTTTCGTTCCACCAACAATCGCTGTCGGTGTCACATCTTCAGTGGGAATTCCGATAGATGTCATTTCTTGAAGTACGATTTTTACGTTGTTG</canonical_amplicon>
		<polymorphic_amplicon>TAACTTGCACGTCTTCAATACATCGGAGGACATGTTATCATGTACAGCAGAACGCCGCTTCTTTTTCGGTGTCTCGTCAACAGCTCTGGAAATYTTCACTCGTTTCTCTCTGGCTACTCGAACGCCAACAATCGACCAGAGAATAGCCAAGATTGCGTCTTTCGTTCCACCAACAATCGCTGTCGGTGTCACATCTTCAGTGGGAATTCCGATAGATGTCATTTCTTGAAGTACGATTTTTACGTTGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3913</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>345175</contig_pos>
        <strand></strand>
        <context>TGGGGCAAAC[G/T]AAAATAATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCTGGATCCATTAATGGGATTCGTGATGGGTGATATGATTTGGGGCAAAC</left_flank>
        <right_flank>AAAATAATAAATATTTGATTAGGAACTGAATGTTTTTTCCGGAAGTCAAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTCAATTGACTTGTTCTAAGACTTTAAAAAAAAGCAGAGAATTTTTCGTAGTTTTTTATGAGTTAGGGTTTGCATTCTGACGCAACGGTGTACTGTACCGAGTTTAGTGTTCAGCGGTGAGCCCACAAGTCCAGCTTCTCTTAACGTAATTTCGAGAAAACTATTTTTTTTTCATGTTCCCCATCTTTAAGACCAGCCTTTCTGTCTTATCTAAATCTGTTCCAACTAAAACACTGATATCGATATAGTCTGTAAAACGACAAGATTAATAGAAGAGGAGTAGGAGAATCCTGAGAATATGTTGATACTACATACATGTGTTTTTTGACTCATCCCCTGCCTCACTTGTTTGTTTCTTTTTCTCTTCTTCTTCTTATCAGTTCAATTAAAATTAATACATGTCACATGTTTCTATAATTCAATCTCTTTTCTAATTCCTCGCACTTTCCTGGATCCATTAATGGGATTCGTGATGGGTGATATGATTTGGGGCAAACGAAAATAATAAATATTTGATTAGGAACTGAATGTTTTTTCCGGAAGTCAAGACCAATAGGAAGTAAATATATGCAGTGTTTTGGAAGATTTAGTGCTCCATCTGGTTGCAAAGTCCTAATGTCGTGTCACACGGTAGATTCTAGAATTCGGAAATTCCCAAAAAGTTAGTGCGTATAGTGAGAAAATACATTCGTAAATCGTCCGTGTACCAGACAATATTTGTATTTTTTCTCTCTTTTCACCAGAAGTGCGATACGTCGTTTTTTAGGAATGAATCACATTCGGCTTAAGCCCAGCACAATGATCAAAATAAAATCTGGGAAAAAGTATGAATAAAAAGAAGCCCGTGGATTTGGCTTGAACTCATGGCGCACCCACTTTCCAGACAACATTTCCAAAATTTTCTGACTTCGAATTTCAACAGGAAACGAATGACTTTTTGGCTGCAGAACATGTGTCATCCGTTTGATAACGAAGTTTAAGTAAAAGCGATAAGCCAT</canonical>
            <polymorphic>TATTCAATTGACTTGTTCTAAGACTTTAAAAAAAAGCAGAGAATTTTTCGTAGTTTTTTATGAGTTAGGGTTTGCATTCTGACGCAACGGTGTACTGTACCGAGTTTAGTGTTCAGCGGTGAGCCCACAAGTCCAGCTTCTCTTAACGTAATTTCGAGAAAACTATTTTTTTTTCATGTTCCCCATCTTTAAGACCAGCCTTTCTGTCTTATCTAAATCTGTTCCAACTAAAACACTGATATCGATATAGTCTGTAAAACGACAAGATTAATAGAAGAGGAGTAGGAGAATCCTGAGAATATGTTGATACTACATACATGTGTTTTTTGACTCATCCCCTGCCTCACTTGTTTGTTTCTTTTTCTCTTCTTCTTCTTATCAGTTCAATTAAAATTAATACATGTCACATGTTTCTATAATTCAATCTCTTTTCTAATTCCTCGCACTTTCCTGGATCCATTAATGGGATTCGTGATGGGTGATATGATTTGGGGCAAACKAAAATAATAAATATTTGATTAGGAACTGAATGTTTTTTCCGGAAGTCAAGACCAATAGGAAGTAAATATATGCAGTGTTTTGGAAGATTTAGTGCTCCATCTGGTTGCAAAGTCCTAATGTCGTGTCACACGGTAGATTCTAGAATTCGGAAATTCCCAAAAAGTTAGTGCGTATAGTGAGAAAATACATTCGTAAATCGTCCGTGTACCAGACAATATTTGTATTTTTTCTCTCTTTTCACCAGAAGTGCGATACGTCGTTTTTTAGGAATGAATCACATTCGGCTTAAGCCCAGCACAATGATCAAAATAAAATCTGGGAAAAAGTATGAATAAAAAGAAGCCCGTGGATTTGGCTTGAACTCATGGCGCACCCACTTTCCAGACAACATTTCCAAAATTTTCTGACTTCGAATTTCAACAGGAAACGAATGACTTTTTGGCTGCAGAACATGTGTCATCCGTTTGATAACGAAGTTTAAGTAAAAGCGATAAGCCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCACTTGTTTGTTTCTTTTTCTC</pcr_primer_p1>
		<pcr_primer_p2>ACTAAATCTTCCAAAACACTGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCACTTGTTTGTTTCTTTTTCTCTTCTTCTTCTTATCAGTTCAATTAAAATTAATACATGTCACATGTTTCTATAATTCAATCTCTTTTCTAATTCCTCGCACTTTCCTGGATCCATTAATGGGATTCGTGATGGGTGATATGATTTGGGGCAAACGAAAATAATAAATATTTGATTAGGAACTGAATGTTTTTTCCGGAAGTCAAGACCAATAGGAAGTAAATATATGCAGTGTTTTGGAAGATTTAGT</canonical_amplicon>
		<polymorphic_amplicon>TCACTTGTTTGTTTCTTTTTCTCTTCTTCTTCTTATCAGTTCAATTAAAATTAATACATGTCACATGTTTCTATAATTCAATCTCTTTTCTAATTCCTCGCACTTTCCTGGATCCATTAATGGGATTCGTGATGGGTGATATGATTTGGGGCAAACKAAAATAATAAATATTTGATTAGGAACTGAATGTTTTTTCCGGAAGTCAAGACCAATAGGAAGTAAATATATGCAGTGTTTTGGAAGATTTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3948</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>531129</contig_pos>
        <strand>+</strand>
        <context>TTCTCGAGTT[C/T]GCATGGGTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTGGATTGGAGCATGTCTCACTTTTATTTTTGGTGCTCTTCTCGAGTT</left_flank>
        <right_flank>GCATGGGTTACTTACATATCTTCTCGGAGTTTCTACAAACGTAAGCGACC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCATCGCTTCCAAGTTTCCAACTGAACAATGTAACACAGTTCCTGTGATTTGATATGAAATACAAAAGTCTATTTCAGGTTTACACCGATTTATGTACCAGCAAAACGAACACAGGAACTTATTCTTGTTTGAGAACAATTCTGGAGTTGAGAAGACAATTCAGGTAACTATAGGGAATGTGGAATTTCAAAATAATAGGAGAATTTCAGTTATTACCTACTTCAATTATATATTCCGTCTACTATGCTTGTTATCGTATCATGGGTATCTTTCTGGTTGGATCGTGGCGCTGTACCTGCTCGAGTCACTCTTGGAGTCACTACTCTTCTTACCATGACAACTCAGGTGAATTTTTGATGCCACTACAACCAGTCCATATTCTTGAATTTATAGGCGTCTGGCATAAATGCAAAATTGCCTCCCGTATCGTACACAAAAGCGATTGATGTTTGGATTGGAGCATGTCTCACTTTTATTTTTGGTGCTCTTCTCGAGTTTGCATGGGTTACTTACATATCTTCTCGGAGTTTCTACAAACGTAAGCGACCTTATAATCATCTTTTAACTATGACATGCTTTCAGGAAAGAAAATATGCTCGAGTAGGAATTCTTTATTGGTGGAGACCAGACAAGCATTGATAATTCCAAATACAGTAGTTGCCAACTTCACGGAACAACCGACAGATGTAAGTCATTAAATGCTTCATACTTGAGCTCCACTCTTTTTAAGGAAGTTGAAATGGGACTCACTGATGCTCCAGATGTTTGGGTTCGTCATCAGAACAACGGGAAAACAGTAACAGAAGTAAACGGACTGCTAAATCACACAAACGACGGGTCAGGAGAACTCATTATCATTGACTCAAAACACAAAAACCGAAGATATGTTTTGTGGAACAACTTCAAGAACTTGAGATTGGTCAGATGGGCTCGAAGAAGATTGGATGTGGATGATAATGCGAAAAGAGCAGATTTGATATCAAGTGAGGGAATGGAAA</canonical>
            <polymorphic>TTCATCGCTTCCAAGTTTCCAACTGAACAATGTAACACAGTTCCTGTGATTTGATATGAAATACAAAAGTCTATTTCAGGTTTACACCGATTTATGTACCAGCAAAACGAACACAGGAACTTATTCTTGTTTGAGAACAATTCTGGAGTTGAGAAGACAATTCAGGTAACTATAGGGAATGTGGAATTTCAAAATAATAGGAGAATTTCAGTTATTACCTACTTCAATTATATATTCCGTCTACTATGCTTGTTATCGTATCATGGGTATCTTTCTGGTTGGATCGTGGCGCTGTACCTGCTCGAGTCACTCTTGGAGTCACTACTCTTCTTACCATGACAACTCAGGTGAATTTTTGATGCCACTACAACCAGTCCATATTCTTGAATTTATAGGCGTCTGGCATAAATGCAAAATTGCCTCCCGTATCGTACACAAAAGCGATTGATGTTTGGATTGGAGCATGTCTCACTTTTATTTTTGGTGCTCTTCTCGAGTTYGCATGGGTTACTTACATATCTTCTCGGAGTTTCTACAAACGTAAGCGACCTTATAATCATCTTTTAACTATGACATGCTTTCAGGAAAGAAAATATGCTCGAGTAGGAATTCTTTATTGGTGGAGACCAGACAAGCATTGATAATTCCAAATACAGTAGTTGCCAACTTCACGGAACAACCGACAGATGTAAGTCATTAAATGCTTCATACTTGAGCTCCACTCTTTTTAAGGAAGTTGAAATGGGACTCACTGATGCTCCAGATGTTTGGGTTCGTCATCAGAACAACGGGAAAACAGTAACAGAAGTAAACGGACTGCTAAATCACACAAACGACGGGTCAGGAGAACTCATTATCATTGACTCAAAACACAAAAACCGAAGATATGTTTTGTGGAACAACTTCAAGAACTTGAGATTGGTCAGATGGGCTCGAAGAAGATTGGATGTGGATGATAATGCGAAAAGAGCAGATTTGATATCAAGTGAGGGAATGGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>499 411 90</canonical_bands>
                <polymorphic_bands>589 411</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACTACAACCAGTCCATATTCTT</pcr_primer_p1>
		<pcr_primer_p2>GAATTCCTACTCGAGCATATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACTACAACCAGTCCATATTCTTGAATTTATAGGCGTCTGGCATAAATGCAAAATTGCCTCCCGTATCGTACACAAAAGCGATTGATGTTTGGATTGGAGCATGTCTCACTTTTATTTTTGGTGCTCTTCTCGAGTTTGCATGGGTTACTTACATATCTTCTCGGAGTTTCTACAAACGTAAGCGACCTTATAATCATCTTTTAACTATGACATGCTTTCAGGAAAGAAAATATGCTCGAGTAGGAATTC</canonical_amplicon>
		<polymorphic_amplicon>CACTACAACCAGTCCATATTCTTGAATTTATAGGCGTCTGGCATAAATGCAAAATTGCCTCCCGTATCGTACACAAAAGCGATTGATGTTTGGATTGGAGCATGTCTCACTTTTATTTTTGGTGCTCTTCTCGAGTTYGCATGGGTTACTTACATATCTTCTCGGAGTTTCTACAAACGTAAGCGACCTTATAATCATCTTTTAACTATGACATGCTTTCAGGAAAGAAAATATGCTCGAGTAGGAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3949</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>541007</contig_pos>
        <strand>+</strand>
        <context>AAAGTTCGCT[A/T]TCAATCTAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCATACAGAAAATGCGTTAAAACAAAACAAGAGGAAACGAAAGTTCGCT</left_flank>
        <right_flank>TCAATCTAACTACAATCTACAATAAATATACTATTTGACTTCCAAAACCC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAACAAAAATTGCAACACAAATTGAGTTTGCCATGGAAGTGATGCTCCTCCGGAATCTGTAAAAAATCTCTTCAGTTTTCACGTTGACTCGCGGAAAACTACAAAGATTTCTTACCTGATAATGAAGAGACATCTAACAAAATATGAAGGTCATAACTGGGGGAACATACGAATGTTGAGAACTCCGGTGTCTACTGGGCTCTTTTATAGACACCTACCTATATCGTTTTGTTTGTATGCACTACTTTGACACTTGCGCGTCAATCGAAATGGTCACGGGGAGAACTGTCACTTTTGACGACATTTGACCGACAGGCGGGACTGATTTGTGTTCCTGCAGAAACACAAATCAATAAGAGAGATCATCCAAATTTCTCATATCCACCTGATTTGAGTGTTTTGAAAGCTCTCAATACAATGTCTACCTATACAACTTTATTCTTTAAAACCATACAGAAAATGCGTTAAAACAAAACAAGAGGAAACGAAAGTTCGCTATCAATCTAACTACAATCTACAATAAATATACTATTTGACTTCCAAAACCCTTTCGAGATTGGAAATCAGTTCAGTGAGACGAGAATTGCTGCTTCGTGCAGTCGAGTTCGGGATGCTTCGTTGCAATAATCCTTTATCCTTCAAGATGCGAAGACCATTTTTGAAAGAGTCCGAATTGATAGATTCAACTACAAAAAAAGTATATGAACAATTTTGTGACCCACAGTAACTTACGAAGTGGTGAGAATGGGAGACTGATTTTTCCGGCAAGAGACTCTTGGCACAATTGACGAATGATATTATTATCAGATGTTGGTTCAGTAGAACATCTTTCAGAAGAGACAAATGACGAAACGAGATACAATGATTGGATGAATGGTCGGACAAGATTGGCAAAGAATTGGAGAGCCTCACGAGATTTCGAATCGCGAACCTGTAAATAATGACAAAAAATTAAATGACAACCCGAAAAAATACCCGTACTGTTCCGCCAATTTGGA</canonical>
            <polymorphic>CTCAACAAAAATTGCAACACAAATTGAGTTTGCCATGGAAGTGATGCTCCTCCGGAATCTGTAAAAAATCTCTTCAGTTTTCACGTTGACTCGCGGAAAACTACAAAGATTTCTTACCTGATAATGAAGAGACATCTAACAAAATATGAAGGTCATAACTGGGGGAACATACGAATGTTGAGAACTCCGGTGTCTACTGGGCTCTTTTATAGACACCTACCTATATCGTTTTGTTTGTATGCACTACTTTGACACTTGCGCGTCAATCGAAATGGTCACGGGGAGAACTGTCACTTTTGACGACATTTGACCGACAGGCGGGACTGATTTGTGTTCCTGCAGAAACACAAATCAATAAGAGAGATCATCCAAATTTCTCATATCCACCTGATTTGAGTGTTTTGAAAGCTCTCAATACAATGTCTACCTATACAACTTTATTCTTTAAAACCATACAGAAAATGCGTTAAAACAAAACAAGAGGAAACGAAAGTTCGCTWTCAATCTAACTACAATCTACAATAAATATACTATTTGACTTCCAAAACCCTTTCGAGATTGGAAATCAGTTCAGTGAGACGAGAATTGCTGCTTCGTGCAGTCGAGTTCGGGATGCTTCGTTGCAATAATCCTTTATCCTTCAAGATGCGAAGACCATTTTTGAAAGAGTCCGAATTGATAGATTCAACTACAAAAAAAGTATATGAACAATTTTGTGACCCACAGTAACTTACGAAGTGGTGAGAATGGGAGACTGATTTTTCCGGCAAGAGACTCTTGGCACAATTGACGAATGATATTATTATCAGATGTTGGTTCAGTAGAACATCTTTCAGAAGAGACAAATGACGAAACGAGATACAATGATTGGATGAATGGTCGGACAAGATTGGCAAAGAATTGGAGAGCCTCACGAGATTTCGAATCGCGAACCTGTAAATAATGACAAAAAATTAAATGACAACCCGAAAAAATACCCGTACTGTTCCGCCAATTTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGAAACACAAATCAATAAGAG</pcr_primer_p1>
		<pcr_primer_p2>ATTCTCGTCTCACTGAACTGAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCAGAAACACAAATCAATAAGAGAGATCATCCAAATTTCTCATATCCACCTGATTTGAGTGTTTTGAAAGCTCTCAATACAATGTCTACCTATACAACTTTATTCTTTAAAACCATACAGAAAATGCGTTAAAACAAAACAAGAGGAAACGAAAGTTCGCTATCAATCTAACTACAATCTACAATAAATATACTATTTGACTTCCAAAACCCTTTCGAGATTGGAAATCAGTTCAGTGAGACGAGAAT</canonical_amplicon>
		<polymorphic_amplicon>GCAGAAACACAAATCAATAAGAGAGATCATCCAAATTTCTCATATCCACCTGATTTGAGTGTTTTGAAAGCTCTCAATACAATGTCTACCTATACAACTTTATTCTTTAAAACCATACAGAAAATGCGTTAAAACAAAACAAGAGGAAACGAAAGTTCGCTWTCAATCTAACTACAATCTACAATAAATATACTATTTGACTTCCAAAACCCTTTCGAGATTGGAAATCAGTTCAGTGAGACGAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3951</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>543125</contig_pos>
        <strand></strand>
        <context>GGTATTCCTG[A/C]ACACATAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGTGTGCGATGGCTAGACAATGAAGCTGTGATTGTAGCAAGGTATTCCTG</left_flank>
        <right_flank>ACACATAGAAAGTACGTGAGTAAGATTCGAAAGAAAACGAACAGTTAGGA</right_flank>
        <qual_score>49</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAATGAACTATGCGATTCTCGCGGAGCAACGTATTCATCAGTCACTTTCAAACACGATTTGAGCTTTTCGAATGCATAGTCTGCCAGGTCTTTCCCTTTCGTCTTTTTGGATTGATAACCAACGACATCGCCACCTTCTGATATGATATTCTCACAAAGCCATTCACAGTCCCGTTCAAATGTACTTCTAGAGACTTTCTCTCTCCATTTAGCAAGCGCCAGACAGGAAACCACGGCTACTGGTGAGATCGAGCACATCATCTGAGCTTCTAAAAAACACAAAAACTGTACAATGATCACGGTTTATATGATAACAAACCGTAGACAACATGGAATCCAATAGCACGAATCATCGTACGATCATCAACTGTCTCCGAGTGTGTACGGTGCCAAGGTACAAGTTCTCGATAAGAAAACGAGGAGGCCAATTTGGTCATTCGAACAGGTCGTGTGCGATGGCTAGACAATGAAGCTGTGATTGTAGCAAGGTATTCCTGAACACATAGAAAGTACGTGAGTAAGATTCGAAAGAAAACGAACAGTTAGGAGAATTGGCCGTCCATAGTGCATTCTCACGACACCACATTGTTTCGACTGTCGGAATCCACTGAAAATGGCACGGAAGACACCAATAACTGACTCCCGAACTTTTGGTATTCCCATTAACTCGTGAAGGAAAATTCCCTCGACTACTGCATCATATGTATATGAAACTGGGACCAAGTAGCAATCTTTTATGAACCCTGAAATCAAACGGCTTGTGAGACTCAGTTGAACTAAAATAACTACCGTGCTGAACTGCCTCCACTACATTTGAAATCAACCCGTTTTTCGGAGTGAGCACTTTTCCGAATCGACTTCTCGTCCCTTCTAGAAAGAATTCGATCGGCATATTTTTTTCGAGAACCTGCTCGATGTAAGAATGTAGAATTGCCCGATACAACTGATCTTTCCCTCTCTCATCATCGGGATCCACACGACGACGAATGAAGAAAGCG</canonical>
            <polymorphic>ATGAATGAACTATGCGATTCTCGCGGAGCAACGTATTCATCAGTCACTTTCAAACACGATTTGAGCTTTTCGAATGCATAGTCTGCCAGGTCTTTCCCTTTCGTCTTTTTGGATTGATAACCAACGACATCGCCACCTTCTGATATGATATTCTCACAAAGCCATTCACAGTCCCGTTCAAATGTACTTCTAGAGACTTTCTCTCTCCATTTAGCAAGCGCCAGACAGGAAACCACGGCTACTGGTGAGATCGAGCACATCATCTGAGCTTCTAAAAAACACAAAAACTGTACAATGATCACGGTTTATATGATAACAAACCGTAGACAACATGGAATCCAATAGCACGAATCATCGTACGATCATCAACTGTCTCCGAGTGTGTACGGTGCCAAGGTACAAGTTCTCGATAAGAAAACGAGGAGGCCAATTTGGTCATTCGAACAGGTCGTGTGCGATGGCTAGACAATGAAGCTGTGATTGTAGCAAGGTATTCCTGMACACATAGAAAGTACGTGAGTAAGATTCGAAAGAAAACGAACAGTTAGGAGAATTGGCCGTCCATAGTGCATTCTCACGACACCACATTGTTTCGACTGTCGGAATCCACTGAAAATGGCACGGAAGACACCAATAACTGACTCCCGAACTTTTGGTATTCCCATTAACTCGTGAAGGAAAATTCCCTCGACTACTGCATCATATGTATATGAAACTGGGACCAAGTAGCAATCTTTTATGAACCCTGAAATCAAACGGCTTGTGAGACTCAGTTGAACTAAAATAACTACCGTGCTGAACTGCCTCCACTACATTTGAAATCAACCCGTTTTTCGGAGTGAGCACTTTTCCGAATCGACTTCTCGTCCCTTCTAGAAAGAATTCGATCGGCATATTTTTTTCGAGAACCTGCTCGATGTAAGAATGTAGAATTGCCCGATACAACTGATCTTTCCCTCTCTCATCATCGGGATCCACACGACGACGAATGAAGAAAGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>216 202 190 90 80 68 66 31 30 27</canonical_bands>
                <polymorphic_bands>216 202 190 170 68 66 31 30 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTACAAGTTCTCGATAAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>GGAGTCAGTTATTGGTGTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTACAAGTTCTCGATAAGAAAACGAGGAGGCCAATTTGGTCATTCGAACAGGTCGTGTGCGATGGCTAGACAATGAAGCTGTGATTGTAGCAAGGTATTCCTGAACACATAGAAAGTACGTGAGTAAGATTCGAAAGAAAACGAACAGTTAGGAGAATTGGCCGTCCATAGTGCATTCTCACGACACCACATTGTTTCGACTGTCGGAATCCACTGAAAATGGCACGGAAGACACCAATAACTGACTCC</canonical_amplicon>
		<polymorphic_amplicon>GGTACAAGTTCTCGATAAGAAAACGAGGAGGCCAATTTGGTCATTCGAACAGGTCGTGTGCGATGGCTAGACAATGAAGCTGTGATTGTAGCAAGGTATTCCTGMACACATAGAAAGTACGTGAGTAAGATTCGAAAGAAAACGAACAGTTAGGAGAATTGGCCGTCCATAGTGCATTCTCACGACACCACATTGTTTCGACTGTCGGAATCCACTGAAAATGGCACGGAAGACACCAATAACTGACTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3953</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>550978</contig_pos>
        <strand>+</strand>
        <context>AGAAGAAATA[A/C]GTTTGTGCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATCTGCAGTTTTTCATCTAGAAAACGATGATATTTCGCAAGAAGAAATA</left_flank>
        <right_flank>GTTTGTGCTGAAAGAATTTTAGATTGGATTCCAAAAAAAAAAAAAATGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAAATTCGGAAAAAAGCCCGGCCCGGCCCGGCCCGTTACAAGTATGGCGTTATGGTTTTCTGAAAACGGGTCGCGTGCGTTCCGTATGCGGTTCCGATTTCAACCGCGCGCGAACGCTGACTGTCCGTAATGGGTCCGTTTGCATTTTACCTGTGTAAAAATCCCTCTTTAAAACAAACCAACCAAAATTCAATCAAATTGCTTCCAAAAGTTCCTATTTGATTTCTTAATTCTACCAGTTCCCTCAAAATTACAATTAACACACCATCTACTTCTCTTCCAATATTATTCCAAATTCTGCCAGTAAATTTGGGTACATTTTTGATTTGATACCAATTCAAGCGAAACTTTGGAAACTGAATTAACAACAAATTCATTAATCAAATCAAAAAGAGGAATCGTCCTTGAAGTGAACTGATTTGGCCTGTGCACTCAAAATCTCTCTCAATATCTGCAGTTTTTCATCTAGAAAACGATGATATTTCGCAAGAAGAAATAAGTTTGTGCTGAAAGAATTTTAGATTGGATTCCAAAAAAAAAAAAAATGAAATCACTCACGAAGCAAACAATGTATGAAAAAGAATAACGACAAGCGCTAACCAAGCTACTCTTGTTCCAGTTATACTGTACACAACAAGACTGGAAATCAAAACGATAAATAATCCAAGCTGGACCAAAAGAGCCACAAGTTGAGGTTTCAGAAGTTTCAGATATGATTTCTGTAACACATCCAATTAAGTTCTCGATAATTTTCAAGGATGACTTACATGAACAGCAATAATACTGAGAACGATTGTCACTAAATGAATAGAATGTATCGCAATCCATACACCAAAAAATACCCGATAAGCAATCCAATATTTACTAGGATCTGCTCTACGTAGATACTGAAATGATATTATCCCATTTGTATTTCGTTAAGAAACACTTACTGCTAACGTTAGCCGGTACAAAAACAATTTTTCATGCCATTCCGTCCTAACCAATAAAATTGAGCCG</canonical>
            <polymorphic>CGAAATTCGGAAAAAAGCCCGGCCCGGCCCGGCCCGTTACAAGTATGGCGTTATGGTTTTCTGAAAACGGGTCGCGTGCGTTCCGTATGCGGTTCCGATTTCAACCGCGCGCGAACGCTGACTGTCCGTAATGGGTCCGTTTGCATTTTACCTGTGTAAAAATCCCTCTTTAAAACAAACCAACCAAAATTCAATCAAATTGCTTCCAAAAGTTCCTATTTGATTTCTTAATTCTACCAGTTCCCTCAAAATTACAATTAACACACCATCTACTTCTCTTCCAATATTATTCCAAATTCTGCCAGTAAATTTGGGTACATTTTTGATTTGATACCAATTCAAGCGAAACTTTGGAAACTGAATTAACAACAAATTCATTAATCAAATCAAAAAGAGGAATCGTCCTTGAAGTGAACTGATTTGGCCTGTGCACTCAAAATCTCTCTCAATATCTGCAGTTTTTCATCTAGAAAACGATGATATTTCGCAAGAAGAAATAMGTTTGTGCTGAAAGAATTTTAGATTGGATTCCAAAAAAAAAAAAAATGAAATCACTCACGAAGCAAACAATGTATGAAAAAGAATAACGACAAGCGCTAACCAAGCTACTCTTGTTCCAGTTATACTGTACACAACAAGACTGGAAATCAAAACGATAAATAATCCAAGCTGGACCAAAAGAGCCACAAGTTGAGGTTTCAGAAGTTTCAGATATGATTTCTGTAACACATCCAATTAAGTTCTCGATAATTTTCAAGGATGACTTACATGAACAGCAATAATACTGAGAACGATTGTCACTAAATGAATAGAATGTATCGCAATCCATACACCAAAAAATACCCGATAAGCAATCCAATATTTACTAGGATCTGCTCTACGTAGATACTGAAATGATATTATCCCATTTGTATTTCGTTAAGAAACACTTACTGCTAACGTTAGCCGGTACAAAAACAATTTTTCATGCCATTCCGTCCTAACCAATAAAATTGAGCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTAATCAAATCAAAAAGAGG</pcr_primer_p1>
		<pcr_primer_p2>GGAACAAGAGTAGCTTGGTTAG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TCATTAATCAAATCAAAAAGAGGAATCGTCCTTGAAGTGAACTGATTTGGCCTGTGCACTCAAAATCTCTCTCAATATCTGCAGTTTTTCATCTAGAAAACGATGATATTTCGCAAGAAGAAATAAGTTTGTGCTGAAAGAATTTTAGATTGGATTCCAAAAAAAAAAAAAATGAAATCACTCACGAAGCAAACAATGTATGAAAAAGAATAACGACAAGCGCTAACCAAGCTACTCTTGTTCC</canonical_amplicon>
		<polymorphic_amplicon>TCATTAATCAAATCAAAAAGAGGAATCGTCCTTGAAGTGAACTGATTTGGCCTGTGCACTCAAAATCTCTCTCAATATCTGCAGTTTTTCATCTAGAAAACGATGATATTTCGCAAGAAGAAATAMGTTTGTGCTGAAAGAATTTTAGATTGGATTCCAAAAAAAAAAAAAATGAAATCACTCACGAAGCAAACAATGTATGAAAAAGAATAACGACAAGCGCTAACCAAGCTACTCTTGTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3954</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>550952</contig_pos>
        <strand>+</strand>
        <context>CATCTAGAAA[A/C]CGATGATATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCCTGTGCACTCAAAATCTCTCTCAATATCTGCAGTTTTTCATCTAGAAA</left_flank>
        <right_flank>CGATGATATTTCGCAAGAAGAAATAAGTTTGTGCTGAAAGAATTTTAGAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGACAGGCCCCCCGGGCCGGGTCTCCGAAATTCGGAAAAAAGCCCGGCCCGGCCCGGCCCGTTACAAGTATGGCGTTATGGTTTTCTGAAAACGGGTCGCGTGCGTTCCGTATGCGGTTCCGATTTCAACCGCGCGCGAACGCTGACTGTCCGTAATGGGTCCGTTTGCATTTTACCTGTGTAAAAATCCCTCTTTAAAACAAACCAACCAAAATTCAATCAAATTGCTTCCAAAAGTTCCTATTTGATTTCTTAATTCTACCAGTTCCCTCAAAATTACAATTAACACACCATCTACTTCTCTTCCAATATTATTCCAAATTCTGCCAGTAAATTTGGGTACATTTTTGATTTGATACCAATTCAAGCGAAACTTTGGAAACTGAATTAACAACAAATTCATTAATCAAATCAAAAAGAGGAATCGTCCTTGAAGTGAACTGATTTGGCCTGTGCACTCAAAATCTCTCTCAATATCTGCAGTTTTTCATCTAGAAAACGATGATATTTCGCAAGAAGAAATAAGTTTGTGCTGAAAGAATTTTAGATTGGATTCCAAAAAAAAAAAAAATGAAATCACTCACGAAGCAAACAATGTATGAAAAAGAATAACGACAAGCGCTAACCAAGCTACTCTTGTTCCAGTTATACTGTACACAACAAGACTGGAAATCAAAACGATAAATAATCCAAGCTGGACCAAAAGAGCCACAAGTTGAGGTTTCAGAAGTTTCAGATATGATTTCTGTAACACATCCAATTAAGTTCTCGATAATTTTCAAGGATGACTTACATGAACAGCAATAATACTGAGAACGATTGTCACTAAATGAATAGAATGTATCGCAATCCATACACCAAAAAATACCCGATAAGCAATCCAATATTTACTAGGATCTGCTCTACGTAGATACTGAAATGATATTATCCCATTTGTATTTCGTTAAGAAACACTTACTGCTAACGTTAGCCGGTACAAAAACAATTTTTCATGCCATT</canonical>
            <polymorphic>ATGACAGGCCCCCCGGGCCGGGTCTCCGAAATTCGGAAAAAAGCCCGGCCCGGCCCGGCCCGTTACAAGTATGGCGTTATGGTTTTCTGAAAACGGGTCGCGTGCGTTCCGTATGCGGTTCCGATTTCAACCGCGCGCGAACGCTGACTGTCCGTAATGGGTCCGTTTGCATTTTACCTGTGTAAAAATCCCTCTTTAAAACAAACCAACCAAAATTCAATCAAATTGCTTCCAAAAGTTCCTATTTGATTTCTTAATTCTACCAGTTCCCTCAAAATTACAATTAACACACCATCTACTTCTCTTCCAATATTATTCCAAATTCTGCCAGTAAATTTGGGTACATTTTTGATTTGATACCAATTCAAGCGAAACTTTGGAAACTGAATTAACAACAAATTCATTAATCAAATCAAAAAGAGGAATCGTCCTTGAAGTGAACTGATTTGGCCTGTGCACTCAAAATCTCTCTCAATATCTGCAGTTTTTCATCTAGAAAMCGATGATATTTCGCAAGAAGAAATAAGTTTGTGCTGAAAGAATTTTAGATTGGATTCCAAAAAAAAAAAAAATGAAATCACTCACGAAGCAAACAATGTATGAAAAAGAATAACGACAAGCGCTAACCAAGCTACTCTTGTTCCAGTTATACTGTACACAACAAGACTGGAAATCAAAACGATAAATAATCCAAGCTGGACCAAAAGAGCCACAAGTTGAGGTTTCAGAAGTTTCAGATATGATTTCTGTAACACATCCAATTAAGTTCTCGATAATTTTCAAGGATGACTTACATGAACAGCAATAATACTGAGAACGATTGTCACTAAATGAATAGAATGTATCGCAATCCATACACCAAAAAATACCCGATAAGCAATCCAATATTTACTAGGATCTGCTCTACGTAGATACTGAAATGATATTATCCCATTTGTATTTCGTTAAGAAACACTTACTGCTAACGTTAGCCGGTACAAAAACAATTTTTCATGCCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTATTCCAAATTCTGCCAGT</pcr_primer_p1>
		<pcr_primer_p2>GGAATCCAATCTAAAATTCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATATTATTCCAAATTCTGCCAGTAAATTTGGGTACATTTTTGATTTGATACCAATTCAAGCGAAACTTTGGAAACTGAATTAACAACAAATTCATTAATCAAATCAAAAAGAGGAATCGTCCTTGAAGTGAACTGATTTGGCCTGTGCACTCAAAATCTCTCTCAATATCTGCAGTTTTTCATCTAGAAAACGATGATATTTCGCAAGAAGAAATAAGTTTGTGCTGAAAGAATTTTAGATTGGATTCC</canonical_amplicon>
		<polymorphic_amplicon>ATATTATTCCAAATTCTGCCAGTAAATTTGGGTACATTTTTGATTTGATACCAATTCAAGCGAAACTTTGGAAACTGAATTAACAACAAATTCATTAATCAAATCAAAAAGAGGAATCGTCCTTGAAGTGAACTGATTTGGCCTGTGCACTCAAAATCTCTCTCAATATCTGCAGTTTTTCATCTAGAAAMCGATGATATTTCGCAAGAAGAAATAAGTTTGTGCTGAAAGAATTTTAGATTGGATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3955</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>591958</contig_pos>
        <strand>+</strand>
        <context>AATTAACCAG[A/G]AAATTTGTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTATTCATATCAAGCCTTTAGAAATCTGAAAATTGCTGCCAATTAACCAG</left_flank>
        <right_flank>AAATTTGTATTTTTAATTGCTCATTTGAATTTCTAAGAATCTAAATCCTA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTTCTCAAGTTTATTTCTCAAGTCATTTTGATAGGATTAACGTTTTTGGTGGTCTCTTCATTCTCTTTGTATCTTTCGGTTATTTCTATATTTTTGAAATAATTTGAATATTTGTTTCTAAAGGTACCATGTCGCTGGGATTCTCCTGGATCCGCAGGAGGTTCAGCTACTACGAGGATAAACATCAGTTCCAGGAATGTGCAAATGATACTGAGCCAACTATTCGATTACAAGGTATGTCTGAAAATTTTGAATGTTTTGCTATAATTTTTTGATTATTTTTTATAGTGAAACAAATTTTACAAGTGATTCTGAAAATGGTTGAAAGCTCTCTGAATGCTTCAATTCGAAATCTAAAAATTTCTGAACTTAATCCAGAAAATTAAGATTTGTCGATAATTTAAAAAATCGAAATTTCTAGAATTTTTCGTACAGAAAACAATTTTCTATTCATATCAAGCCTTTAGAAATCTGAAAATTGCTGCCAATTAACCAGAAAATTTGTATTTTTAATTGCTCATTTGAATTTCTAAGAATCTAAATCCTAGAACTGATAGAACAATAATAGAACTAGAACTTCTTAATTCCTAGAAAATATTTATAGCCTGGGAACTACATCTGCAGAGTTTTCAATTTAATAGTGAATGATTTTTTTAGTCCAAAAGTCAATGTGTTAGGCCCATCTTCTAACAGTTTTCTGTCATTAACCTCCCTGTAATAAAAGGACCCTCTTCAAAATGTGTTTTTTCAAATAAAAATTTCCGTAGGTTTTCAGTGAAAAATATTCCAGTAATTTCGAAATTTCATTTTTTTGAAGGGCCCCTCTTTAATAAAATTTCCCCCTCTAATAGAAAGACTCTCCTGAGGTACCTTGGGTTTTATGGTGAATTGAGTTTCCTCAATACGATTTACTTCTATTTTACTATGAATTTTTCCATGTTTGCCTCAGCTTTTTGATTTAAACCTGACCCATCTATGCAAATCCAAACGTTTTCTA</canonical>
            <polymorphic>AAGTTTCTCAAGTTTATTTCTCAAGTCATTTTGATAGGATTAACGTTTTTGGTGGTCTCTTCATTCTCTTTGTATCTTTCGGTTATTTCTATATTTTTGAAATAATTTGAATATTTGTTTCTAAAGGTACCATGTCGCTGGGATTCTCCTGGATCCGCAGGAGGTTCAGCTACTACGAGGATAAACATCAGTTCCAGGAATGTGCAAATGATACTGAGCCAACTATTCGATTACAAGGTATGTCTGAAAATTTTGAATGTTTTGCTATAATTTTTTGATTATTTTTTATAGTGAAACAAATTTTACAAGTGATTCTGAAAATGGTTGAAAGCTCTCTGAATGCTTCAATTCGAAATCTAAAAATTTCTGAACTTAATCCAGAAAATTAAGATTTGTCGATAATTTAAAAAATCGAAATTTCTAGAATTTTTCGTACAGAAAACAATTTTCTATTCATATCAAGCCTTTAGAAATCTGAAAATTGCTGCCAATTAACCAGRAAATTTGTATTTTTAATTGCTCATTTGAATTTCTAAGAATCTAAATCCTAGAACTGATAGAACAATAATAGAACTAGAACTTCTTAATTCCTAGAAAATATTTATAGCCTGGGAACTACATCTGCAGAGTTTTCAATTTAATAGTGAATGATTTTTTTAGTCCAAAAGTCAATGTGTTAGGCCCATCTTCTAACAGTTTTCTGTCATTAACCTCCCTGTAATAAAAGGACCCTCTTCAAAATGTGTTTTTTCAAATAAAAATTTCCGTAGGTTTTCAGTGAAAAATATTCCAGTAATTTCGAAATTTCATTTTTTTGAAGGGCCCCTCTTTAATAAAATTTCCCCCTCTAATAGAAAGACTCTCCTGAGGTACCTTGGGTTTTATGGTGAATTGAGTTTCCTCAATACGATTTACTTCTATTTTACTATGAATTTTTCCATGTTTGCCTCAGCTTTTTGATTTAAACCTGACCCATCTATGCAAATCCAAACGTTTTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTATTCATATCAAGCCTTTAG</pcr_primer_p1>
		<pcr_primer_p2>GTTAGAAGATGGGCCTAACAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTATTCATATCAAGCCTTTAGAAATCTGAAAATTGCTGCCAATTAACCAGAAAATTTGTATTTTTAATTGCTCATTTGAATTTCTAAGAATCTAAATCCTAGAACTGATAGAACAATAATAGAACTAGAACTTCTTAATTCCTAGAAAATATTTATAGCCTGGGAACTACATCTGCAGAGTTTTCAATTTAATAGTGAATGATTTTTTTAGTCCAAAAGTCAATGTGTTAGGCCCATCTTCTAAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTATTCATATCAAGCCTTTAGAAATCTGAAAATTGCTGCCAATTAACCAGRAAATTTGTATTTTTAATTGCTCATTTGAATTTCTAAGAATCTAAATCCTAGAACTGATAGAACAATAATAGAACTAGAACTTCTTAATTCCTAGAAAATATTTATAGCCTGGGAACTACATCTGCAGAGTTTTCAATTTAATAGTGAATGATTTTTTTAGTCCAAAAGTCAATGTGTTAGGCCCATCTTCTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3956</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>618795</contig_pos>
        <strand>+</strand>
        <context>CTGGTTCTTG[A/T]TATCAATTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCAAAAACTATAAAAAATATATTTATCCCAAAAATTTCTCTGGTTCTTG</left_flank>
        <right_flank>TATCAATTCGTTTAGCACATTTCAAAGTAATGTATTCAGAGATCATTCAT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGCTGAGAATAAAACATTTGTACCCAAACGACTATCGTCATTCGAAATGTGGTTTTTCATTGAATTCACTACGTCAGAGAGCTTATGCGAGACAAAATTAAACGACAAAATGCTTGCGAGAATCGAGATCCAGAAACCCGTTTGTAGTTTTTATTGTCAGCGGAACCAGTTGTGATATCACTTATCCGGCTAATGAAAGCGGCTAACTGATGAAAGCCTAAAGTTCATTCAACCGCGGTTGACACCCTCGCTTTTTGAAATTTGAGTTGAGAAAACAAAAACAGAGAAAAAACGAGTGGGTGGAGGAGTAGGAGGTCACAAGCGAGACATAATTGAACAGAACTTCTTGACCTGATTAGATATTACGTCGTTTTTTTCCATTTTCATTGGTTTTCCATTGGACAGAAATTTCCGGGAACCAATTTTGACCCCCTGTTCTCATAATTCATTCAAAAACTATAAAAAATATATTTATCCCAAAAATTTCTCTGGTTCTTGTTATCAATTCGTTTAGCACATTTCAAAGTAATGTATTCAGAGATCATTCATGAAATCAGATATCCAGGAGGAAGAAATATATAACGACACGGTAGCTTTGATGTTTTAGGTTAAAACGGTGATTTAGATCTACAAGAAAACAACGAAAAATGAAGATTTTTCAGGTCATCGAAAAAATCAGAATACATTTACACACTTCTTTACTTTGAGGAAATACCAAAAATGTTGATTTTATCCTTAAATGTTTTATTTTGTTCTGACCACAATTAATCAAACTCTTGCTTTCAAAGTGTTTTTTTCTTTTGGGTGATACCTTCTGATCTGTGTATCCTACTCTTCTTTTTACCATCGCATTAGTTCAGAAATCACGATTATTTCAAATGTTTCTTTTCCTCTCTTTTTTCTTTTTTTACCACTTGACCAGATGTTTTTCAAGGCCAACCATCCATCATCTGACTCTACTATTTCCCAGTTTCTTCCACTTTTCTTTTCGGGAGAATA</canonical>
            <polymorphic>TCGCTGAGAATAAAACATTTGTACCCAAACGACTATCGTCATTCGAAATGTGGTTTTTCATTGAATTCACTACGTCAGAGAGCTTATGCGAGACAAAATTAAACGACAAAATGCTTGCGAGAATCGAGATCCAGAAACCCGTTTGTAGTTTTTATTGTCAGCGGAACCAGTTGTGATATCACTTATCCGGCTAATGAAAGCGGCTAACTGATGAAAGCCTAAAGTTCATTCAACCGCGGTTGACACCCTCGCTTTTTGAAATTTGAGTTGAGAAAACAAAAACAGAGAAAAAACGAGTGGGTGGAGGAGTAGGAGGTCACAAGCGAGACATAATTGAACAGAACTTCTTGACCTGATTAGATATTACGTCGTTTTTTTCCATTTTCATTGGTTTTCCATTGGACAGAAATTTCCGGGAACCAATTTTGACCCCCTGTTCTCATAATTCATTCAAAAACTATAAAAAATATATTTATCCCAAAAATTTCTCTGGTTCTTGWTATCAATTCGTTTAGCACATTTCAAAGTAATGTATTCAGAGATCATTCATGAAATCAGATATCCAGGAGGAAGAAATATATAACGACACGGTAGCTTTGATGTTTTAGGTTAAAACGGTGATTTAGATCTACAAGAAAACAACGAAAAATGAAGATTTTTCAGGTCATCGAAAAAATCAGAATACATTTACACACTTCTTTACTTTGAGGAAATACCAAAAATGTTGATTTTATCCTTAAATGTTTTATTTTGTTCTGACCACAATTAATCAAACTCTTGCTTTCAAAGTGTTTTTTTCTTTTGGGTGATACCTTCTGATCTGTGTATCCTACTCTTCTTTTTACCATCGCATTAGTTCAGAAATCACGATTATTTCAAATGTTTCTTTTCCTCTCTTTTTTCTTTTTTTACCACTTGACCAGATGTTTTTCAAGGCCAACCATCCATCATCTGACTCTACTATTTCCCAGTTTCTTCCACTTTTCTTTTCGGGAGAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAACTTCTTGACCTGATTAGA</pcr_primer_p1>
		<pcr_primer_p2>TGTCGTTATATATTTCTTCCTCCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGAACTTCTTGACCTGATTAGATATTACGTCGTTTTTTTCCATTTTCATTGGTTTTCCATTGGACAGAAATTTCCGGGAACCAATTTTGACCCCCTGTTCTCATAATTCATTCAAAAACTATAAAAAATATATTTATCCCAAAAATTTCTCTGGTTCTTGTTATCAATTCGTTTAGCACATTTCAAAGTAATGTATTCAGAGATCATTCATGAAATCAGATATCCAGGAGGAAGAAATATATAACGACA</canonical_amplicon>
		<polymorphic_amplicon>CAGAACTTCTTGACCTGATTAGATATTACGTCGTTTTTTTCCATTTTCATTGGTTTTCCATTGGACAGAAATTTCCGGGAACCAATTTTGACCCCCTGTTCTCATAATTCATTCAAAAACTATAAAAAATATATTTATCCCAAAAATTTCTCTGGTTCTTGWTATCAATTCGTTTAGCACATTTCAAAGTAATGTATTCAGAGATCATTCATGAAATCAGATATCCAGGAGGAAGAAATATATAACGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3957</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>618998</contig_pos>
        <strand>+</strand>
        <context>CACTTCTTTA[C/T]TTTGAGGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGATTTTTCAGGTCATCGAAAAAATCAGAATACATTTACACACTTCTTTA</left_flank>
        <right_flank>TTTGAGGAAATACCAAAAATGTTGATTTTATCCTTAAATGTTTTATTTTG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAACTGATGAAAGCCTAAAGTTCATTCAACCGCGGTTGACACCCTCGCTTTTTGAAATTTGAGTTGAGAAAACAAAAACAGAGAAAAAACGAGTGGGTGGAGGAGTAGGAGGTCACAAGCGAGACATAATTGAACAGAACTTCTTGACCTGATTAGATATTACGTCGTTTTTTTCCATTTTCATTGGTTTTCCATTGGACAGAAATTTCCGGGAACCAATTTTGACCCCCTGTTCTCATAATTCATTCAAAAACTATAAAAAATATATTTATCCCAAAAATTTCTCTGGTTCTTGTTATCAATTCGTTTAGCACATTTCAAAGTAATGTATTCAGAGATCATTCATGAAATCAGATATCCAGGAGGAAGAAATATATAACGACACGGTAGCTTTGATGTTTTAGGTTAAAACGGTGATTTAGATCTACAAGAAAACAACGAAAAATGAAGATTTTTCAGGTCATCGAAAAAATCAGAATACATTTACACACTTCTTTACTTTGAGGAAATACCAAAAATGTTGATTTTATCCTTAAATGTTTTATTTTGTTCTGACCACAATTAATCAAACTCTTGCTTTCAAAGTGTTTTTTTCTTTTGGGTGATACCTTCTGATCTGTGTATCCTACTCTTCTTTTTACCATCGCATTAGTTCAGAAATCACGATTATTTCAAATGTTTCTTTTCCTCTCTTTTTTCTTTTTTTACCACTTGACCAGATGTTTTTCAAGGCCAACCATCCATCATCTGACTCTACTATTTCCCAGTTTCTTCCACTTTTCTTTTCGGGAGAATATAGGTTTGAAATTCCACTGGTCGTTTCCTTTGAAATTCTCCGAAGTACTGGGAAAAAGAACGTCTCAGGGTGGTCCCGTTGTTTGGTTCCATCCATTTTCCATCTCTCGTCATACAATTTTCAAATTAATTTATCTCTTCCCGTCAATGTTTGCACTTGGAAATTTACAATTCAGAAGACCTCTTCTCTCTTTTTTCCCATCT</canonical>
            <polymorphic>CTAACTGATGAAAGCCTAAAGTTCATTCAACCGCGGTTGACACCCTCGCTTTTTGAAATTTGAGTTGAGAAAACAAAAACAGAGAAAAAACGAGTGGGTGGAGGAGTAGGAGGTCACAAGCGAGACATAATTGAACAGAACTTCTTGACCTGATTAGATATTACGTCGTTTTTTTCCATTTTCATTGGTTTTCCATTGGACAGAAATTTCCGGGAACCAATTTTGACCCCCTGTTCTCATAATTCATTCAAAAACTATAAAAAATATATTTATCCCAAAAATTTCTCTGGTTCTTGTTATCAATTCGTTTAGCACATTTCAAAGTAATGTATTCAGAGATCATTCATGAAATCAGATATCCAGGAGGAAGAAATATATAACGACACGGTAGCTTTGATGTTTTAGGTTAAAACGGTGATTTAGATCTACAAGAAAACAACGAAAAATGAAGATTTTTCAGGTCATCGAAAAAATCAGAATACATTTACACACTTCTTTAYTTTGAGGAAATACCAAAAATGTTGATTTTATCCTTAAATGTTTTATTTTGTTCTGACCACAATTAATCAAACTCTTGCTTTCAAAGTGTTTTTTTCTTTTGGGTGATACCTTCTGATCTGTGTATCCTACTCTTCTTTTTACCATCGCATTAGTTCAGAAATCACGATTATTTCAAATGTTTCTTTTCCTCTCTTTTTTCTTTTTTTACCACTTGACCAGATGTTTTTCAAGGCCAACCATCCATCATCTGACTCTACTATTTCCCAGTTTCTTCCACTTTTCTTTTCGGGAGAATATAGGTTTGAAATTCCACTGGTCGTTTCCTTTGAAATTCTCCGAAGTACTGGGAAAAAGAACGTCTCAGGGTGGTCCCGTTGTTTGGTTCCATCCATTTTCCATCTCTCGTCATACAATTTTCAAATTAATTTATCTCTTCCCGTCAATGTTTGCACTTGGAAATTTACAATTCAGAAGACCTCTTCTCTCTTTTTTCCCATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTACAAGAAAACAACGAAAAATG</pcr_primer_p1>
		<pcr_primer_p2>TGAAATAATCGTGATTTCTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTACAAGAAAACAACGAAAAATGAAGATTTTTCAGGTCATCGAAAAAATCAGAATACATTTACACACTTCTTTACTTTGAGGAAATACCAAAAATGTTGATTTTATCCTTAAATGTTTTATTTTGTTCTGACCACAATTAATCAAACTCTTGCTTTCAAAGTGTTTTTTTCTTTTGGGTGATACCTTCTGATCTGTGTATCCTACTCTTCTTTTTACCATCGCATTAGTTCAGAAATCACGATTATTTCA</canonical_amplicon>
		<polymorphic_amplicon>CTACAAGAAAACAACGAAAAATGAAGATTTTTCAGGTCATCGAAAAAATCAGAATACATTTACACACTTCTTTAYTTTGAGGAAATACCAAAAATGTTGATTTTATCCTTAAATGTTTTATTTTGTTCTGACCACAATTAATCAAACTCTTGCTTTCAAAGTGTTTTTTTCTTTTGGGTGATACCTTCTGATCTGTGTATCCTACTCTTCTTTTTACCATCGCATTAGTTCAGAAATCACGATTATTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3958</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>621550</contig_pos>
        <strand>+</strand>
        <context>TTATGAAAAG[C/T]ATTGAAAACC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCTGCTCTTTTTCTAAAAATAATTGGTTCCAGTTTTTATTTATGAAAAG</left_flank>
        <right_flank>ATTGAAAACCAATTCCAAGAAACCTGCCCATTTGGTCACACCGTCATCCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTCTATTTTACGACACGCGACGAACTTTTTGAATGGCGTGTCGTAAAATAAAATGCTACGTACGCAAACACTCTTTGGCATGTTGACGAAAAAATGCACAAATCCGGTTAGCTCGGGGTTGGCTAAATTTCCCGAACGAATGAAACCCTAATTCGGGAACTCGATTCTGGTTTTTTTTTCAGAAGCCACCATCGTATACCGTTTGTGTCACCAATTCTTCCCAATCGACACTTCCTCCAAGTTATGAAGAAGCACTGGAGGCTCGTAGAAACATGCAATCATCTCAAATTGTCCCAGCAAGAAAGAATCGTCGAAATTCAGGAGTTTTTGTTGTATAGTCCCAGCTTTGCAAAGTATTTTGACAATGATGTCCAAGAAGTGACACTGATAATAATTGCATATTTTTTCTGGTTTATTTTTAATAAAATGATCTCACATTTCACTCTAGTCTGCTCTTTTTCTAAAAATAATTGGTTCCAGTTTTTATTTATGAAAAGTATTGAAAACCAATTCCAAGAAACCTGCCCATTTGGTCACACCGTCATCCAATTTTAAATGAATTCAACCTAGTATTCTAATGTTCTTTTTTATTGCTCAAGACGCGTAACCTCAGAATCATTGAGATCAAAACAGCATAGTCTTCTTCTCCTTCTGCTTCTTCTCATGATGTCTGGCTCATTATTTCTTCTATATTAATAGTTCATTTACACTTTAGAGAGCTCCGTTTTCGAAATTCTATTTTATTTTCACTAACGAATCTTTCTCTATAACTTTTTAAATGAAAGACAAATAATCTTGAGGTTTTCCTTCCAAGTCATTTTGCACTCTGCTTGGCAACAACGCCTTCTGTCTTCGTCGTCGTCTTCTAACTCCGTTTTGCCTTTTCGTGGGAATTCCCATGATTACAATGTGGTTTTCTGAGTACATCATGTTGGCAAATTCGTTTTGAGACAATGTGTCAATAACATGAATTGGAATATACTCAGCCACTTGTGAGG</canonical>
            <polymorphic>CATTCTATTTTACGACACGCGACGAACTTTTTGAATGGCGTGTCGTAAAATAAAATGCTACGTACGCAAACACTCTTTGGCATGTTGACGAAAAAATGCACAAATCCGGTTAGCTCGGGGTTGGCTAAATTTCCCGAACGAATGAAACCCTAATTCGGGAACTCGATTCTGGTTTTTTTTTCAGAAGCCACCATCGTATACCGTTTGTGTCACCAATTCTTCCCAATCGACACTTCCTCCAAGTTATGAAGAAGCACTGGAGGCTCGTAGAAACATGCAATCATCTCAAATTGTCCCAGCAAGAAAGAATCGTCGAAATTCAGGAGTTTTTGTTGTATAGTCCCAGCTTTGCAAAGTATTTTGACAATGATGTCCAAGAAGTGACACTGATAATAATTGCATATTTTTTCTGGTTTATTTTTAATAAAATGATCTCACATTTCACTCTAGTCTGCTCTTTTTCTAAAAATAATTGGTTCCAGTTTTTATTTATGAAAAGYATTGAAAACCAATTCCAAGAAACCTGCCCATTTGGTCACACCGTCATCCAATTTTAAATGAATTCAACCTAGTATTCTAATGTTCTTTTTTATTGCTCAAGACGCGTAACCTCAGAATCATTGAGATCAAAACAGCATAGTCTTCTTCTCCTTCTGCTTCTTCTCATGATGTCTGGCTCATTATTTCTTCTATATTAATAGTTCATTTACACTTTAGAGAGCTCCGTTTTCGAAATTCTATTTTATTTTCACTAACGAATCTTTCTCTATAACTTTTTAAATGAAAGACAAATAATCTTGAGGTTTTCCTTCCAAGTCATTTTGCACTCTGCTTGGCAACAACGCCTTCTGTCTTCGTCGTCGTCTTCTAACTCCGTTTTGCCTTTTCGTGGGAATTCCCATGATTACAATGTGGTTTTCTGAGTACATCATGTTGGCAAATTCGTTTTGAGACAATGTGTCAATAACATGAATTGGAATATACTCAGCCACTTGTGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATGATCTCACATTTCACTCT</pcr_primer_p1>
		<pcr_primer_p2>ACATCATGAGAAGAAGCAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAATGATCTCACATTTCACTCTAGTCTGCTCTTTTTCTAAAAATAATTGGTTCCAGTTTTTATTTATGAAAAGTATTGAAAACCAATTCCAAGAAACCTGCCCATTTGGTCACACCGTCATCCAATTTTAAATGAATTCAACCTAGTATTCTAATGTTCTTTTTTATTGCTCAAGACGCGTAACCTCAGAATCATTGAGATCAAAACAGCATAGTCTTCTTCTCCTTCTGCTTCTTCTCATGATGT</canonical_amplicon>
		<polymorphic_amplicon>AAAATGATCTCACATTTCACTCTAGTCTGCTCTTTTTCTAAAAATAATTGGTTCCAGTTTTTATTTATGAAAAGYATTGAAAACCAATTCCAAGAAACCTGCCCATTTGGTCACACCGTCATCCAATTTTAAATGAATTCAACCTAGTATTCTAATGTTCTTTTTTATTGCTCAAGACGCGTAACCTCAGAATCATTGAGATCAAAACAGCATAGTCTTCTTCTCCTTCTGCTTCTTCTCATGATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3959</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>624114</contig_pos>
        <strand>+</strand>
        <context>TTTTCTTTTC[A/G]ACGTGGTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAAAACAAGGAAATAGACCCCGCCTCCGAAATTCTTCACTTTTCTTTTC</left_flank>
        <right_flank>ACGTGGTTTTTTTAAAGACTAGGTCATCAATTGTCTTTTATGAGCATCGC</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCTTATTCTTCTTTTTCTTCTCCCACCATTGCCAGGTGTACATACTTACATACATTCGCTTATCTGTCTCTCTTTTGGCTATACGCATGGCGAGCCTTGATTACCGGTTGCTATGTCTCGAGTTCTTCACTCTTACTCTCTCTTTTTGTCCCACTTCTCCTTCTTCTTTTTCTTCTTTTTTCTCCTTCATTTCATCATTCTTTTCTCTGTTTTTCTCAGTCTTCGTTCCCCTTCAGGAGCACCTAATTTCTCCTATGATCCTTTCGCTGTACCTATAATATATCACTTTTATTATTTTTCCCCTATTCGTTCTGTTCCGCGTTTTTTCATCAACCTCAAATTTTTAGCAACTTCCTACCTGCGTCAGAAGTTGCTGAGAAACTCGTGATTCTTTTTAGATTAAATTTTGGACTTATTACCACCAGACAAACTTCCCACCAAGTTTTTTCAAAACAAGGAAATAGACCCCGCCTCCGAAATTCTTCACTTTTCTTTTCGACGTGGTTTTTTTAAAGACTAGGTCATCAATTGTCTTTTATGAGCATCGCAAATGAGCACTTTGCGTGTGGGTTGAAATTGGTTTTGACATTCGAATTTTCTCGAAATTCTCAAAAAAAATATGTCTCCACTCAACATTAAACGTGTTTTTTTTCGTTTTGACTGCATATGTCTGAAAATTAAAGTAGATATGAAGCAGCAGAAGATATTTTGAAATTCAGTATCTTCTATTGTCTTGGAATATTTTCTAGAAATGTAGTGAAAGCAGAATAGAAGTGATAATCTTTGACCAGTTATTAGTATCATGAGTATTATGATGGTTACAATGATTCTATGAAAAACTAGTTCTGGTGCTTGAAAAAGTGGTGAGATTAGATGATTGAAGCTCTGTTTTAAGTATTTTCAGAAGTGCCAAATTTTCGTATGATTATCATACTTGAAAACGGGACCAATATTTTTAGACAACCAAATAAGACAACTTGACAAGCACTACAAAATGA</canonical>
            <polymorphic>CTTCTTATTCTTCTTTTTCTTCTCCCACCATTGCCAGGTGTACATACTTACATACATTCGCTTATCTGTCTCTCTTTTGGCTATACGCATGGCGAGCCTTGATTACCGGTTGCTATGTCTCGAGTTCTTCACTCTTACTCTCTCTTTTTGTCCCACTTCTCCTTCTTCTTTTTCTTCTTTTTTCTCCTTCATTTCATCATTCTTTTCTCTGTTTTTCTCAGTCTTCGTTCCCCTTCAGGAGCACCTAATTTCTCCTATGATCCTTTCGCTGTACCTATAATATATCACTTTTATTATTTTTCCCCTATTCGTTCTGTTCCGCGTTTTTTCATCAACCTCAAATTTTTAGCAACTTCCTACCTGCGTCAGAAGTTGCTGAGAAACTCGTGATTCTTTTTAGATTAAATTTTGGACTTATTACCACCAGACAAACTTCCCACCAAGTTTTTTCAAAACAAGGAAATAGACCCCGCCTCCGAAATTCTTCACTTTTCTTTTCRACGTGGTTTTTTTAAAGACTAGGTCATCAATTGTCTTTTATGAGCATCGCAAATGAGCACTTTGCGTGTGGGTTGAAATTGGTTTTGACATTCGAATTTTCTCGAAATTCTCAAAAAAAATATGTCTCCACTCAACATTAAACGTGTTTTTTTTCGTTTTGACTGCATATGTCTGAAAATTAAAGTAGATATGAAGCAGCAGAAGATATTTTGAAATTCAGTATCTTCTATTGTCTTGGAATATTTTCTAGAAATGTAGTGAAAGCAGAATAGAAGTGATAATCTTTGACCAGTTATTAGTATCATGAGTATTATGATGGTTACAATGATTCTATGAAAAACTAGTTCTGGTGCTTGAAAAAGTGGTGAGATTAGATGATTGAAGCTCTGTTTTAAGTATTTTCAGAAGTGCCAAATTTTCGTATGATTATCATACTTGAAAACGGGACCAATATTTTTAGACAACCAAATAAGACAACTTGACAAGCACTACAAAATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>397 378 121 94 10</canonical_bands>
                <polymorphic_bands>472 397 121 10</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGGACTTATTACCACCAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAACACGTTTAATGTTGAGTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGGACTTATTACCACCAGACAAACTTCCCACCAAGTTTTTTCAAAACAAGGAAATAGACCCCGCCTCCGAAATTCTTCACTTTTCTTTTCGACGTGGTTTTTTTAAAGACTAGGTCATCAATTGTCTTTTATGAGCATCGCAAATGAGCACTTTGCGTGTGGGTTGAAATTGGTTTTGACATTCGAATTTTCTCGAAATTCTCAAAAAAAATATGTCTCCACTCAACATTAAACGTGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGGACTTATTACCACCAGACAAACTTCCCACCAAGTTTTTTCAAAACAAGGAAATAGACCCCGCCTCCGAAATTCTTCACTTTTCTTTTCRACGTGGTTTTTTTAAAGACTAGGTCATCAATTGTCTTTTATGAGCATCGCAAATGAGCACTTTGCGTGTGGGTTGAAATTGGTTTTGACATTCGAATTTTCTCGAAATTCTCAAAAAAAATATGTCTCCACTCAACATTAAACGTGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3960</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>626074</contig_pos>
        <strand>+</strand>
        <context>GAACGCACAT[C/T]AAGTTTCGTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAGAAGTGTACGAAAAGAGTTTCACAAAATTATGAAAAAGAACGCACAT</left_flank>
        <right_flank>AAGTTTCGTGTCATATTTCGTTTAGCTGTCTGGGGACTTTTGGTCGGAAC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATATTCTTTGCTCATCCTCCAACTTCCACCAATCTCAGCTCGTTTTTTTTATGACTACTGTAATCCTTGAAAAACAGAAAAGAGCTCTTTCGATTGTCGTCGTAGCTATAGAAGAAGAGGATTAGATCCCACAAATCTGCTACAGAAATTTGTATCAAAGAACGTCTCTCTGAATCAACCAGTATGTCTGATTTTGAAATCGTATATTTATCGTGTTGTGCTCTGTGAATGTTGATATTTTGATATTCTCATTCAATTGTCGTTAGGGCGTTTGTTAATTCAATGAAAGGACTTTCGGGGGAGTAGAAAATTTGCAAACTACGGTTTTTTTTAAATTCTTTCCGGTACCATGTGGGTTTTTCCCAGTTGATTGGAGAAATTGAATTACACCTCACTCTACTGATTCGGTCACTTCATTCAACCAGGTTGCAGCCATCAGAGTTCAGGGGAGAAGTGTACGAAAAGAGTTTCACAAAATTATGAAAAAGAACGCACATCAAGTTTCGTGTCATATTTCGTTTAGCTGTCTGGGGACTTTTGGTCGGAACGCTAATGAACGGCGACAAGCTGAATTTATATTTATTAGAGGATTGCCAATATAGCTATTCCAAATAACAATGAAAACGGACTCTGGTTTTGTATATTATTGATGTATTATCTATCATGTTTATATGTGACTTGATGTCTAGATTCAGATCACCATTTCCAAAATGTTTCGGAATTTTTATGTCCGACAAAAAATTTGTTGTGATTTTTTAATAACTAAATTTTTTCCAAAGTTATGTGTGTTCATAATATTATTTCAAAAAGATTCAGGAAAAATTGAAACCTTTGAAAACGCAGTCCTCGTCCAAGCGGCTCGCGGGAACCCTAGTCCAAGCCACTGTTTATCTAGTTTTTTAGGCAATTTTTCCGAATTTTTCGCAGTTTCCGGTCAGTTTTCCTGTATTTTCAGAAAAATTGAGTTATTCAATTTGAAGACTTGATAAAGAGATCAT</canonical>
            <polymorphic>TTATATTCTTTGCTCATCCTCCAACTTCCACCAATCTCAGCTCGTTTTTTTTATGACTACTGTAATCCTTGAAAAACAGAAAAGAGCTCTTTCGATTGTCGTCGTAGCTATAGAAGAAGAGGATTAGATCCCACAAATCTGCTACAGAAATTTGTATCAAAGAACGTCTCTCTGAATCAACCAGTATGTCTGATTTTGAAATCGTATATTTATCGTGTTGTGCTCTGTGAATGTTGATATTTTGATATTCTCATTCAATTGTCGTTAGGGCGTTTGTTAATTCAATGAAAGGACTTTCGGGGGAGTAGAAAATTTGCAAACTACGGTTTTTTTTAAATTCTTTCCGGTACCATGTGGGTTTTTCCCAGTTGATTGGAGAAATTGAATTACACCTCACTCTACTGATTCGGTCACTTCATTCAACCAGGTTGCAGCCATCAGAGTTCAGGGGAGAAGTGTACGAAAAGAGTTTCACAAAATTATGAAAAAGAACGCACATYAAGTTTCGTGTCATATTTCGTTTAGCTGTCTGGGGACTTTTGGTCGGAACGCTAATGAACGGCGACAAGCTGAATTTATATTTATTAGAGGATTGCCAATATAGCTATTCCAAATAACAATGAAAACGGACTCTGGTTTTGTATATTATTGATGTATTATCTATCATGTTTATATGTGACTTGATGTCTAGATTCAGATCACCATTTCCAAAATGTTTCGGAATTTTTATGTCCGACAAAAAATTTGTTGTGATTTTTTAATAACTAAATTTTTTCCAAAGTTATGTGTGTTCATAATATTATTTCAAAAAGATTCAGGAAAAATTGAAACCTTTGAAAACGCAGTCCTCGTCCAAGCGGCTCGCGGGAACCCTAGTCCAAGCCACTGTTTATCTAGTTTTTTAGGCAATTTTTCCGAATTTTTCGCAGTTTCCGGTCAGTTTTCCTGTATTTTCAGAAAAATTGAGTTATTCAATTTGAAGACTTGATAAAGAGATCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATTACACCTCACTCTACTGAT</pcr_primer_p1>
		<pcr_primer_p2>AGTCCGTTTTCATTGTTATTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAATTACACCTCACTCTACTGATTCGGTCACTTCATTCAACCAGGTTGCAGCCATCAGAGTTCAGGGGAGAAGTGTACGAAAAGAGTTTCACAAAATTATGAAAAAGAACGCACATCAAGTTTCGTGTCATATTTCGTTTAGCTGTCTGGGGACTTTTGGTCGGAACGCTAATGAACGGCGACAAGCTGAATTTATATTTATTAGAGGATTGCCAATATAGCTATTCCAAATAACAATGAAAACGGACT</canonical_amplicon>
		<polymorphic_amplicon>TGAATTACACCTCACTCTACTGATTCGGTCACTTCATTCAACCAGGTTGCAGCCATCAGAGTTCAGGGGAGAAGTGTACGAAAAGAGTTTCACAAAATTATGAAAAAGAACGCACATYAAGTTTCGTGTCATATTTCGTTTAGCTGTCTGGGGACTTTTGGTCGGAACGCTAATGAACGGCGACAAGCTGAATTTATATTTATTAGAGGATTGCCAATATAGCTATTCCAAATAACAATGAAAACGGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3961</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>625909</contig_pos>
        <strand></strand>
        <context>GGWTTTTTTT[A/T]AATTCTTTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGAAAGGACTTTCGGGGGAGTAGAAAATTTGCAAACTACGGTTTTTTTT</left_flank>
        <right_flank>AATTCTTTCCGGTACCATGTGGGTTTTTCCCAGTTGATTGGAGAAATTGA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCATTTTCACATTTCTTTCTCCTTCTAATACCTCTTTTCTCGATGTAAACAATCTTTGTTGGCCATGTGATTTCAAACTTTCCCTTCTTTTTCCAACTATGTTCTCCTTCTGGATGACAGCTGAATCCAAACAAACGAGATTCTCATGGAGGTTCTGTCCCCCTTATATTCTTTGCTCATCCTCCAACTTCCACCAATCTCAGCTCGTTTTTTTTATGACTACTGTAATCCTTGAAAAACAGAAAAGAGCTCTTTCGATTGTCGTCGTAGCTATAGAAGAAGAGGATTAGATCCCACAAATCTGCTACAGAAATTTGTATCAAAGAACGTCTCTCTGAATCAACCAGTATGTCTGATTTTGAAATCGTATATTTATCGTGTTGTGCTCTGTGAATGTTGATATTTTGATATTCTCATTCAATTGTCGTTAGGGCGTTTGTTAATTCAATGAAAGGACTTTCGGGGGAGTAGAAAATTTGCAAACTACGGTTTTTTTTAAATTCTTTCCGGTACCATGTGGGTTTTTCCCAGTTGATTGGAGAAATTGAATTACACCTCACTCTACTGATTCGGTCACTTCATTCAACCAGGTTGCAGCCATCAGAGTTCAGGGGAGAAGTGTACGAAAAGAGTTTCACAAAATTATGAAAAAGAACGCACATCAAGTTTCGTGTCATATTTCGTTTAGCTGTCTGGGGACTTTTGGTCGGAACGCTAATGAACGGCGACAAGCTGAATTTATATTTATTAGAGGATTGCCAATATAGCTATTCCAAATAACAATGAAAACGGACTCTGGTTTTGTATATTATTGATGTATTATCTATCATGTTTATATGTGACTTGATGTCTAGATTCAGATCACCATTTCCAAAATGTTTCGGAATTTTTATGTCCGACAAAAAATTTGTTGTGATTTTTTAATAACTAAATTTTTTCCAAAGTTATGTGTGTTCATAATATTATTTCAAAAAGATTCAGGAAAAATTGAAACCTTT</canonical>
            <polymorphic>ACTCATTTTCACATTTCTTTCTCCTTCTAATACCTCTTTTCTCGATGTAAACAATCTTTGTTGGCCATGTGATTTCAAACTTTCCCTTCTTTTTCCAACTATGTTCTCCTTCTGGATGACAGCTGAATCCAAACAAACGAGATTCTCATGGAGGTTCTGTCCCCCTTATATTCTTTGCTCATCCTCCAACTTCCACCAATCTCAGCTCGTTTTTTTTATGACTACTGTAATCCTTGAAAAACAGAAAAGAGCTCTTTCGATTGTCGTCGTAGCTATAGAAGAAGAGGATTAGATCCCACAAATCTGCTACAGAAATTTGTATCAAAGAACGTCTCTCTGAATCAACCAGTATGTCTGATTTTGAAATCGTATATTTATCGTGTTGTGCTCTGTGAATGTTGATATTTTGATATTCTCATTCAATTGTCGTTAGGGCGTTTGTTAATTCAATGAAAGGACTTTCGGGGGAGTAGAAAATTTGCAAACTACGGTTTTTTTTWAATTCTTTCCGGTACCATGTGGGTTTTTCCCAGTTGATTGGAGAAATTGAATTACACCTCACTCTACTGATTCGGTCACTTCATTCAACCAGGTTGCAGCCATCAGAGTTCAGGGGAGAAGTGTACGAAAAGAGTTTCACAAAATTATGAAAAAGAACGCACATCAAGTTTCGTGTCATATTTCGTTTAGCTGTCTGGGGACTTTTGGTCGGAACGCTAATGAACGGCGACAAGCTGAATTTATATTTATTAGAGGATTGCCAATATAGCTATTCCAAATAACAATGAAAACGGACTCTGGTTTTGTATATTATTGATGTATTATCTATCATGTTTATATGTGACTTGATGTCTAGATTCAGATCACCATTTCCAAAATGTTTCGGAATTTTTATGTCCGACAAAAAATTTGTTGTGATTTTTTAATAACTAAATTTTTTCCAAAGTTATGTGTGTTCATAATATTATTTCAAAAAGATTCAGGAAAAATTGAAACCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>313 237 162 149 68 26 25 20</canonical_bands>
                <polymorphic_bands>313 262 162 149 68 26 20</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>442 425 77 56</canonical_bands>
                <polymorphic_bands>481 442 77</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTGTGAATGTTGATATTTTGA</pcr_primer_p1>
		<pcr_primer_p2>AAACTCTTTTCGTACACTTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTGTGAATGTTGATATTTTGATATTCTCATTCAATTGTCGTTAGGGCGTTTGTTAATTCAATGAAAGGACTTTCGGGGGAGTAGAAAATTTGCAAACTACGGTTTTTTTTAAATTCTTTCCGGTACCATGTGGGTTTTTCCCAGTTGATTGGAGAAATTGAATTACACCTCACTCTACTGATTCGGTCACTTCATTCAACCAGGTTGCAGCCATCAGAGTTCAGGGGAGAAGTGTACGAAAAGAGTTT</canonical_amplicon>
		<polymorphic_amplicon>CTCTGTGAATGTTGATATTTTGATATTCTCATTCAATTGTCGTTAGGGCGTTTGTTAATTCAATGAAAGGACTTTCGGGGGAGTAGAAAATTTGCAAACTACGGTTTTTTTTWAATTCTTTCCGGTACCATGTGGGTTTTTCCCAGTTGATTGGAGAAATTGAATTACACCTCACTCTACTGATTCGGTCACTTCATTCAACCAGGTTGCAGCCATCAGAGTTCAGGGGAGAAGTGTACGAAAAGAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3962</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>28140</contig_pos>
        <strand>+</strand>
        <context>CCCCAACTGG[C/T]CCCATCTTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACCTTCTCTCATCCATACATGGACTTCCAACACTTCGACCCCAACTGG</left_flank>
        <right_flank>CCCATCTTCCCAACTCAGCAGGCCGCAGCTGAATTCCTAGGAATTCTAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAAGAGAGAGCTTTGCTTCTCTGTTCTCTCCATTTCTATAAACATATTCACATTTCCATATGATATTTTCCTCATTTCACCCAGCAGTTCCCTTCTCATGTTTCCATGTTCTTTTTTGAGTTCATGTTCCTCTTTTTCTTCTTCTGACCTGTCTAGAAATTAGGCTTGAACTTCAACACACATTTCCTATTAACCTGGTTCAAGAGACCCAAACAATTTTATCTGCAAATTACAGGGGTATTCATATATGCCGAGAATTCGATTTCGTAACGATGTAAGCCCGGACAGTTTTTGGGCAAGGATCACCGGGCAAAAATGGAGCAAGTACCACTATTTCGTCTTTGCCCACACTTTTATGAGGTGAATTTCATAATTCAAGATGTAGATTTTAGTTTTCCTTTTAGTTATGCGATGCTTCATGCCACCCGAAAAACTCTGTCAACTGTCAAACCTTCTCTCATCCATACATGGACTTCCAACACTTCGACCCCAACTGGTCCCATCTTCCCAACTCAGCAGGCCGCAGCTGAATTCCTAGGAATTCTAGATACTGGATTTCTGATTGCTTATGCTATTGTAAGTCTTTCTCCCAATTCTTCTTCCAATGAGCTCAAAAATATTTTTGGATTCTAGGGGCTATACATATGCGGAATTCTCGGAGACAACTACAATCCCCGACGTCTTCTAGCTTTTGGAATGATGGCTTCTTCAATCTGTGTTCTCTGTTTTGGGTATCTGACGGAAACATTCCACGTGTATTCTCCATTGATCTACTCCTTCCTATGGATTCTCAACGGATTCATTCAATCCGTCGGATGGCCTGTTGAGGTATCAATCATGGGAAATTGGTTTGGACACAATGCTCGTGGAGCAGTTATGGGAGCATGGTCATCATGTGCCAGTGTTGGAAATATCATTGGGACGCTGATAGCCAGCTATACACTGTTTCTGGGATATCAGTACTCATTTCTGATTGCTTGCTCTCTTCTCTTCATCTA</canonical>
            <polymorphic>AGGAAGAGAGAGCTTTGCTTCTCTGTTCTCTCCATTTCTATAAACATATTCACATTTCCATATGATATTTTCCTCATTTCACCCAGCAGTTCCCTTCTCATGTTTCCATGTTCTTTTTTGAGTTCATGTTCCTCTTTTTCTTCTTCTGACCTGTCTAGAAATTAGGCTTGAACTTCAACACACATTTCCTATTAACCTGGTTCAAGAGACCCAAACAATTTTATCTGCAAATTACAGGGGTATTCATATATGCCGAGAATTCGATTTCGTAACGATGTAAGCCCGGACAGTTTTTGGGCAAGGATCACCGGGCAAAAATGGAGCAAGTACCACTATTTCGTCTTTGCCCACACTTTTATGAGGTGAATTTCATAATTCAAGATGTAGATTTTAGTTTTCCTTTTAGTTATGCGATGCTTCATGCCACCCGAAAAACTCTGTCAACTGTCAAACCTTCTCTCATCCATACATGGACTTCCAACACTTCGACCCCAACTGGYCCCATCTTCCCAACTCAGCAGGCCGCAGCTGAATTCCTAGGAATTCTAGATACTGGATTTCTGATTGCTTATGCTATTGTAAGTCTTTCTCCCAATTCTTCTTCCAATGAGCTCAAAAATATTTTTGGATTCTAGGGGCTATACATATGCGGAATTCTCGGAGACAACTACAATCCCCGACGTCTTCTAGCTTTTGGAATGATGGCTTCTTCAATCTGTGTTCTCTGTTTTGGGTATCTGACGGAAACATTCCACGTGTATTCTCCATTGATCTACTCCTTCCTATGGATTCTCAACGGATTCATTCAATCCGTCGGATGGCCTGTTGAGGTATCAATCATGGGAAATTGGTTTGGACACAATGCTCGTGGAGCAGTTATGGGAGCATGGTCATCATGTGCCAGTGTTGGAAATATCATTGGGACGCTGATAGCCAGCTATACACTGTTTCTGGGATATCAGTACTCATTTCTGATTGCTTGCTCTCTTCTCTTCATCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGTACCACTATTTCGTCTTTG</pcr_primer_p1>
		<pcr_primer_p2>TAAGCAATCAGAAATCCAGTATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAAGTACCACTATTTCGTCTTTGCCCACACTTTTATGAGGTGAATTTCATAATTCAAGATGTAGATTTTAGTTTTCCTTTTAGTTATGCGATGCTTCATGCCACCCGAAAAACTCTGTCAACTGTCAAACCTTCTCTCATCCATACATGGACTTCCAACACTTCGACCCCAACTGGTCCCATCTTCCCAACTCAGCAGGCCGCAGCTGAATTCCTAGGAATTCTAGATACTGGATTTCTGATTGCTTA</canonical_amplicon>
		<polymorphic_amplicon>CAAGTACCACTATTTCGTCTTTGCCCACACTTTTATGAGGTGAATTTCATAATTCAAGATGTAGATTTTAGTTTTCCTTTTAGTTATGCGATGCTTCATGCCACCCGAAAAACTCTGTCAACTGTCAAACCTTCTCTCATCCATACATGGACTTCCAACACTTCGACCCCAACTGGYCCCATCTTCCCAACTCAGCAGGCCGCAGCTGAATTCCTAGGAATTCTAGATACTGGATTTCTGATTGCTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3963</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>65523</contig_pos>
        <strand>+</strand>
        <context>TTATGGATAT[G/T]TGTATGTGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATTTGTGAGCTGCTCTCCTTCTTTTTTCTTAACTCGGTTTTATGGATAT</left_flank>
        <right_flank>TGTATGTGTTTTAGCGGTGTTTAGATTCTAATCGGGGTGGGCAGGGGTCT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATAACTCTGTAAACAAAAGTATTTTTAGGTTACGGTAGTTGTCGTTGTGGGATCTTTGGCCACGGCTACCGACATTTCTCTTCCAGTGCTCTAATTTTTGTACCAGCAAATAATTTGCCCCACAAAAAACTTTTCTCTAATTTCTTCCATTTTCAGCTCGCATCGTCGCTGGTACGAACAAATGCGTCGGTTGAAGAAGAACGGTGGAAAACGAAAACGCGCTCCACCGAAACCCAAAGAACCGATTGTAGTCGTTCCAGTGCAGCAGACAAATGGAGCACTTCCAGTGCTCACGTCACCATGCGGTGGTCCTTCATCGGCTGCTCCCCAACAGAATGGAGCAGGACAGCCGAGTGCTGCTGAAAACAACATGTTCTCGCCAACAAATTCTGACGGGTTAGTTTTGGTTTTGTTTGCGCGCTCCGTAATTTTTGATTAACCAGTCAGATTTGTGAGCTGCTCTCCTTCTTTTTTCTTAACTCGGTTTTATGGATATTTGTATGTGTTTTAGCGGTGTTTAGATTCTAATCGGGGTGGGCAGGGGTCTTGTTATTTAGATTAAAATCTAGAAAAGGATATGGAAAAAAACTAGAATGTGGATATCATTTTTTTTTCAGTTTTGGTTTGGAAACTTCAGTAGTCTTCTTCTAGAATAGTATGGACTACATTTTCACATCCTTATTCCATGTTCACTTTTTTGAAGTAAATTCAAGGATGCAGACGCTTCCTTCCTGACAATACGTAGCTACAGTAACCCATAAGTCTTATCTCCCTCATAATCCGTTTCCTTAACCCAACATCATCTAGATCCCTCATGTCACAAAACATAGTTACTTTTGTGTCTTGAATATATCTGCTCCATATTCTCGATGCTCCCTTTTCTTTCTTACTTCTTCCACTCTCAAATTTGGGCATACATGAGACGGCATCACATCAGCCTTCTTCTTGTTTTTCTTTCCATCTTGGATTCTTTCTCATTTTCCTTCTCTTTCTTCTT</canonical>
            <polymorphic>AAAATAACTCTGTAAACAAAAGTATTTTTAGGTTACGGTAGTTGTCGTTGTGGGATCTTTGGCCACGGCTACCGACATTTCTCTTCCAGTGCTCTAATTTTTGTACCAGCAAATAATTTGCCCCACAAAAAACTTTTCTCTAATTTCTTCCATTTTCAGCTCGCATCGTCGCTGGTACGAACAAATGCGTCGGTTGAAGAAGAACGGTGGAAAACGAAAACGCGCTCCACCGAAACCCAAAGAACCGATTGTAGTCGTTCCAGTGCAGCAGACAAATGGAGCACTTCCAGTGCTCACGTCACCATGCGGTGGTCCTTCATCGGCTGCTCCCCAACAGAATGGAGCAGGACAGCCGAGTGCTGCTGAAAACAACATGTTCTCGCCAACAAATTCTGACGGGTTAGTTTTGGTTTTGTTTGCGCGCTCCGTAATTTTTGATTAACCAGTCAGATTTGTGAGCTGCTCTCCTTCTTTTTTCTTAACTCGGTTTTATGGATATKTGTATGTGTTTTAGCGGTGTTTAGATTCTAATCGGGGTGGGCAGGGGTCTTGTTATTTAGATTAAAATCTAGAAAAGGATATGGAAAAAAACTAGAATGTGGATATCATTTTTTTTTCAGTTTTGGTTTGGAAACTTCAGTAGTCTTCTTCTAGAATAGTATGGACTACATTTTCACATCCTTATTCCATGTTCACTTTTTTGAAGTAAATTCAAGGATGCAGACGCTTCCTTCCTGACAATACGTAGCTACAGTAACCCATAAGTCTTATCTCCCTCATAATCCGTTTCCTTAACCCAACATCATCTAGATCCCTCATGTCACAAAACATAGTTACTTTTGTGTCTTGAATATATCTGCTCCATATTCTCGATGCTCCCTTTTCTTTCTTACTTCTTCCACTCTCAAATTTGGGCATACATGAGACGGCATCACATCAGCCTTCTTCTTGTTTTTCTTTCCATCTTGGATTCTTTCTCATTTTCCTTCTCTTTCTTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGATTAACCAGTCAGATTT</pcr_primer_p1>
		<pcr_primer_p2>GGATGTGAAAATGTAGTCCATAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGATTAACCAGTCAGATTTGTGAGCTGCTCTCCTTCTTTTTTCTTAACTCGGTTTTATGGATATTTGTATGTGTTTTAGCGGTGTTTAGATTCTAATCGGGGTGGGCAGGGGTCTTGTTATTTAGATTAAAATCTAGAAAAGGATATGGAAAAAAACTAGAATGTGGATATCATTTTTTTTTCAGTTTTGGTTTGGAAACTTCAGTAGTCTTCTTCTAGAATAGTATGGACTACATTTTCACATCC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGATTAACCAGTCAGATTTGTGAGCTGCTCTCCTTCTTTTTTCTTAACTCGGTTTTATGGATATKTGTATGTGTTTTAGCGGTGTTTAGATTCTAATCGGGGTGGGCAGGGGTCTTGTTATTTAGATTAAAATCTAGAAAAGGATATGGAAAAAAACTAGAATGTGGATATCATTTTTTTTTCAGTTTTGGTTTGGAAACTTCAGTAGTCTTCTTCTAGAATAGTATGGACTACATTTTCACATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3964</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>65383</contig_pos>
        <strand>+</strand>
        <context>CAGCCGAGTG[C/G]TGCTGAAAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGGTCCTTCATCGGCTGCTCCCCAACAGAATGGAGCAGGACAGCCGAGTG</left_flank>
        <right_flank>TGCTGAAAACAACATGTTCTCGCCAACAAATTCTGACGGGTTAGTTTTGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTACAGTAACCTAAAAATAGTTTGATTTTCAGGTAGTTATCTTCTCGTTTTTACGGATTTTCGTCGATTTTCGTATTGTAAGCAAATGCAAAATTTTGATAGGGAAAAAATATTGACGGAAAAATAACAAAAATCGAGAAAAATAACTCTGTAAACAAAAGTATTTTTAGGTTACGGTAGTTGTCGTTGTGGGATCTTTGGCCACGGCTACCGACATTTCTCTTCCAGTGCTCTAATTTTTGTACCAGCAAATAATTTGCCCCACAAAAAACTTTTCTCTAATTTCTTCCATTTTCAGCTCGCATCGTCGCTGGTACGAACAAATGCGTCGGTTGAAGAAGAACGGTGGAAAACGAAAACGCGCTCCACCGAAACCCAAAGAACCGATTGTAGTCGTTCCAGTGCAGCAGACAAATGGAGCACTTCCAGTGCTCACGTCACCATGCGGTGGTCCTTCATCGGCTGCTCCCCAACAGAATGGAGCAGGACAGCCGAGTGCTGCTGAAAACAACATGTTCTCGCCAACAAATTCTGACGGGTTAGTTTTGGTTTTGTTTGCGCGCTCCGTAATTTTTGATTAACCAGTCAGATTTGTGAGCTGCTCTCCTTCTTTTTTCTTAACTCGGTTTTATGGATATTTGTATGTGTTTTAGCGGTGTTTAGATTCTAATCGGGGTGGGCAGGGGTCTTGTTATTTAGATTAAAATCTAGAAAAGGATATGGAAAAAAACTAGAATGTGGATATCATTTTTTTTTCAGTTTTGGTTTGGAAACTTCAGTAGTCTTCTTCTAGAATAGTATGGACTACATTTTCACATCCTTATTCCATGTTCACTTTTTTGAAGTAAATTCAAGGATGCAGACGCTTCCTTCCTGACAATACGTAGCTACAGTAACCCATAAGTCTTATCTCCCTCATAATCCGTTTCCTTAACCCAACATCATCTAGATCCCTCATGTCACAAAACATAGTTACTTTTGTGTCTTGAATATATCTGC</canonical>
            <polymorphic>ACTACAGTAACCTAAAAATAGTTTGATTTTCAGGTAGTTATCTTCTCGTTTTTACGGATTTTCGTCGATTTTCGTATTGTAAGCAAATGCAAAATTTTGATAGGGAAAAAATATTGACGGAAAAATAACAAAAATCGAGAAAAATAACTCTGTAAACAAAAGTATTTTTAGGTTACGGTAGTTGTCGTTGTGGGATCTTTGGCCACGGCTACCGACATTTCTCTTCCAGTGCTCTAATTTTTGTACCAGCAAATAATTTGCCCCACAAAAAACTTTTCTCTAATTTCTTCCATTTTCAGCTCGCATCGTCGCTGGTACGAACAAATGCGTCGGTTGAAGAAGAACGGTGGAAAACGAAAACGCGCTCCACCGAAACCCAAAGAACCGATTGTAGTCGTTCCAGTGCAGCAGACAAATGGAGCACTTCCAGTGCTCACGTCACCATGCGGTGGTCCTTCATCGGCTGCTCCCCAACAGAATGGAGCAGGACAGCCGAGTGSTGCTGAAAACAACATGTTCTCGCCAACAAATTCTGACGGGTTAGTTTTGGTTTTGTTTGCGCGCTCCGTAATTTTTGATTAACCAGTCAGATTTGTGAGCTGCTCTCCTTCTTTTTTCTTAACTCGGTTTTATGGATATTTGTATGTGTTTTAGCGGTGTTTAGATTCTAATCGGGGTGGGCAGGGGTCTTGTTATTTAGATTAAAATCTAGAAAAGGATATGGAAAAAAACTAGAATGTGGATATCATTTTTTTTTCAGTTTTGGTTTGGAAACTTCAGTAGTCTTCTTCTAGAATAGTATGGACTACATTTTCACATCCTTATTCCATGTTCACTTTTTTGAAGTAAATTCAAGGATGCAGACGCTTCCTTCCTGACAATACGTAGCTACAGTAACCCATAAGTCTTATCTCCCTCATAATCCGTTTCCTTAACCCAACATCATCTAGATCCCTCATGTCACAAAACATAGTTACTTTTGTGTCTTGAATATATCTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>408 398 100 58 36</canonical_bands>
                <polymorphic_bands>408 398 136 58</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>405 401 100 58 36</canonical_bands>
                <polymorphic_bands>405 401 136 58</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTGTAGTCGTTCCAGTGC</pcr_primer_p1>
		<pcr_primer_p2>TATCCATAAAACCGAGTTAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GATTGTAGTCGTTCCAGTGCAGCAGACAAATGGAGCACTTCCAGTGCTCACGTCACCATGCGGTGGTCCTTCATCGGCTGCTCCCCAACAGAATGGAGCAGGACAGCCGAGTGCTGCTGAAAACAACATGTTCTCGCCAACAAATTCTGACGGGTTAGTTTTGGTTTTGTTTGCGCGCTCCGTAATTTTTGATTAACCAGTCAGATTTGTGAGCTGCTCTCCTTCTTTTTTCTTAACTCGGTTTTATGGATA</canonical_amplicon>
		<polymorphic_amplicon>GATTGTAGTCGTTCCAGTGCAGCAGACAAATGGAGCACTTCCAGTGCTCACGTCACCATGCGGTGGTCCTTCATCGGCTGCTCCCCAACAGAATGGAGCAGGACAGCCGAGTGSTGCTGAAAACAACATGTTCTCGCCAACAAATTCTGACGGGTTAGTTTTGGTTTTGTTTGCGCGCTCCGTAATTTTTGATTAACCAGTCAGATTTGTGAGCTGCTCTCCTTCTTTTTTCTTAACTCGGTTTTATGGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3965</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>65296</contig_pos>
        <strand>+</strand>
        <context>GTGCAGCAGA[A/C]AAATGGAGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGCTCCACCGAAACCCAAAGAACCGATTGTAGTCGTTCCAGTGCAGCAGA</left_flank>
        <right_flank>AAATGGAGCACTTCCAGTGCTCACGTCACCATGCGGTGGTCCTTCATCGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATCTCAAACCTGTATTACACTTTTACAAAAATCGGGATGTGGAAGAGAAACGCCGGTGGCCGTTGCCGAAGGTCCCACAACGACAACTACAGTAACCTAAAAATAGTTTGATTTTCAGGTAGTTATCTTCTCGTTTTTACGGATTTTCGTCGATTTTCGTATTGTAAGCAAATGCAAAATTTTGATAGGGAAAAAATATTGACGGAAAAATAACAAAAATCGAGAAAAATAACTCTGTAAACAAAAGTATTTTTAGGTTACGGTAGTTGTCGTTGTGGGATCTTTGGCCACGGCTACCGACATTTCTCTTCCAGTGCTCTAATTTTTGTACCAGCAAATAATTTGCCCCACAAAAAACTTTTCTCTAATTTCTTCCATTTTCAGCTCGCATCGTCGCTGGTACGAACAAATGCGTCGGTTGAAGAAGAACGGTGGAAAACGAAAACGCGCTCCACCGAAACCCAAAGAACCGATTGTAGTCGTTCCAGTGCAGCAGACAAATGGAGCACTTCCAGTGCTCACGTCACCATGCGGTGGTCCTTCATCGGCTGCTCCCCAACAGAATGGAGCAGGACAGCCGAGTGCTGCTGAAAACAACATGTTCTCGCCAACAAATTCTGACGGGTTAGTTTTGGTTTTGTTTGCGCGCTCCGTAATTTTTGATTAACCAGTCAGATTTGTGAGCTGCTCTCCTTCTTTTTTCTTAACTCGGTTTTATGGATATTTGTATGTGTTTTAGCGGTGTTTAGATTCTAATCGGGGTGGGCAGGGGTCTTGTTATTTAGATTAAAATCTAGAAAAGGATATGGAAAAAAACTAGAATGTGGATATCATTTTTTTTTCAGTTTTGGTTTGGAAACTTCAGTAGTCTTCTTCTAGAATAGTATGGACTACATTTTCACATCCTTATTCCATGTTCACTTTTTTGAAGTAAATTCAAGGATGCAGACGCTTCCTTCCTGACAATACGTAGCTACAGTAACCCATAAGTCTTATCT</canonical>
            <polymorphic>TAATCTCAAACCTGTATTACACTTTTACAAAAATCGGGATGTGGAAGAGAAACGCCGGTGGCCGTTGCCGAAGGTCCCACAACGACAACTACAGTAACCTAAAAATAGTTTGATTTTCAGGTAGTTATCTTCTCGTTTTTACGGATTTTCGTCGATTTTCGTATTGTAAGCAAATGCAAAATTTTGATAGGGAAAAAATATTGACGGAAAAATAACAAAAATCGAGAAAAATAACTCTGTAAACAAAAGTATTTTTAGGTTACGGTAGTTGTCGTTGTGGGATCTTTGGCCACGGCTACCGACATTTCTCTTCCAGTGCTCTAATTTTTGTACCAGCAAATAATTTGCCCCACAAAAAACTTTTCTCTAATTTCTTCCATTTTCAGCTCGCATCGTCGCTGGTACGAACAAATGCGTCGGTTGAAGAAGAACGGTGGAAAACGAAAACGCGCTCCACCGAAACCCAAAGAACCGATTGTAGTCGTTCCAGTGCAGCAGAMAAATGGAGCACTTCCAGTGCTCACGTCACCATGCGGTGGTCCTTCATCGGCTGCTCCCCAACAGAATGGAGCAGGACAGCCGAGTGCTGCTGAAAACAACATGTTCTCGCCAACAAATTCTGACGGGTTAGTTTTGGTTTTGTTTGCGCGCTCCGTAATTTTTGATTAACCAGTCAGATTTGTGAGCTGCTCTCCTTCTTTTTTCTTAACTCGGTTTTATGGATATTTGTATGTGTTTTAGCGGTGTTTAGATTCTAATCGGGGTGGGCAGGGGTCTTGTTATTTAGATTAAAATCTAGAAAAGGATATGGAAAAAAACTAGAATGTGGATATCATTTTTTTTTCAGTTTTGGTTTGGAAACTTCAGTAGTCTTCTTCTAGAATAGTATGGACTACATTTTCACATCCTTATTCCATGTTCACTTTTTTGAAGTAAATTCAAGGATGCAGACGCTTCCTTCCTGACAATACGTAGCTACAGTAACCCATAAGTCTTATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGAAGAACGGTGGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TGACTGGTTAATCAAAAATTACG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GAAGAAGAACGGTGGAAAACGAAAACGCGCTCCACCGAAACCCAAAGAACCGATTGTAGTCGTTCCAGTGCAGCAGACAAATGGAGCACTTCCAGTGCTCACGTCACCATGCGGTGGTCCTTCATCGGCTGCTCCCCAACAGAATGGAGCAGGACAGCCGAGTGCTGCTGAAAACAACATGTTCTCGCCAACAAATTCTGACGGGTTAGTTTTGGTTTTGTTTGCGCGCTCCGTAATTTTTGATTAACCAGTCA</canonical_amplicon>
		<polymorphic_amplicon>GAAGAAGAACGGTGGAAAACGAAAACGCGCTCCACCGAAACCCAAAGAACCGATTGTAGTCGTTCCAGTGCAGCAGAMAAATGGAGCACTTCCAGTGCTCACGTCACCATGCGGTGGTCCTTCATCGGCTGCTCCCCAACAGAATGGAGCAGGACAGCCGAGTGCTGCTGAAAACAACATGTTCTCGCCAACAAATTCTGACGGGTTAGTTTTGGTTTTGTTTGCGCGCTCCGTAATTTTTGATTAACCAGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3966</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>89049</contig_pos>
        <strand>+</strand>
        <context>CCTTGCCGAG[A/G]CTTCCAAGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGCTTCCAAAATCGTCAGCTACGCTCAAGGATTCATGCTCCTTGCCGAG</left_flank>
        <right_flank>CTTCCAAGCAATTCAACTGGGATTTGAATTTCGGAGCCATCGCCTTGATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTGATTGCGGAGGCCTTCAATCTATTGAGCGAGGCTGTCGAGCTCAATTACGATCAAATGGCTGAAGTGATGGATGACTGGAACAAGGGAGAACTCGAGTCATTCCTGATTGAAATCACCGCCAATATTTTGAAGTATCGTGATGAGAAGGGAGAGCCAGTTGTGCCGAAGATTCGGGATTCTGCTGGACAAAAAGGAACCGGAAAGTGGACATGTATCGCTGCGTTGGAATATGGACTTCCAGTTACTCTTATTGGTAAGGAGCTCTTTAAAATTTCAAAATATATCAAATTTTTTCTCCAGGAGAAGCCGTGTTCGCCAGATGTCTTTCTGCTCTCAAAGAAGAGCGTGTTTATGCTTCGGAGCATCTCTCAGGTCCCCATGTTGCCCCGGAAACTGTCATTCAGGACAAGAGAGTGTTCATCAAGCAGATCAGCAAGGCTCTGTACGCTTCCAAAATCGTCAGCTACGCTCAAGGATTCATGCTCCTTGCCGAGACTTCCAAGCAATTCAACTGGGATTTGAATTTCGGAGCCATCGCCTTGATGTGGAGAGGAGGATGCATCATTCGATCGAGGTAAGACATATAGGTATAAGATATAAAAAATGAAGCCCGAACCTTCCAGATTCCTCGGAGACATCAAACGGGCATTCGATAACAACAAGGACCTTCCAAACCTTCTTCTTGATGCTTTCTTCACCAAGGCCATTTCTGAAGCGAATGTAGGAATTTGCTATGAATTTGAAAGATTTCACTAAAAACAAAAAGAAGTTGTAGCAAACAAAAAAATTGCATTCCAACAAGAGAAAATTATGATTCTTTGAGGCCACAAATCACATTTGTAATCTCAAATTTCCAGGATTCGTGGCGCGTCGTGGTCGGTGCCGCCATTCGTCTAGAAATCCCTGTTCCAGCCTTCTCGTCGGCTTTAGCATTCTACGATGGGTACAAGAGAAAGGTAGCGATTTTATATAGCATACGAGTATCTAAACTCTAT</canonical>
            <polymorphic>AGCTGATTGCGGAGGCCTTCAATCTATTGAGCGAGGCTGTCGAGCTCAATTACGATCAAATGGCTGAAGTGATGGATGACTGGAACAAGGGAGAACTCGAGTCATTCCTGATTGAAATCACCGCCAATATTTTGAAGTATCGTGATGAGAAGGGAGAGCCAGTTGTGCCGAAGATTCGGGATTCTGCTGGACAAAAAGGAACCGGAAAGTGGACATGTATCGCTGCGTTGGAATATGGACTTCCAGTTACTCTTATTGGTAAGGAGCTCTTTAAAATTTCAAAATATATCAAATTTTTTCTCCAGGAGAAGCCGTGTTCGCCAGATGTCTTTCTGCTCTCAAAGAAGAGCGTGTTTATGCTTCGGAGCATCTCTCAGGTCCCCATGTTGCCCCGGAAACTGTCATTCAGGACAAGAGAGTGTTCATCAAGCAGATCAGCAAGGCTCTGTACGCTTCCAAAATCGTCAGCTACGCTCAAGGATTCATGCTCCTTGCCGAGRCTTCCAAGCAATTCAACTGGGATTTGAATTTCGGAGCCATCGCCTTGATGTGGAGAGGAGGATGCATCATTCGATCGAGGTAAGACATATAGGTATAAGATATAAAAAATGAAGCCCGAACCTTCCAGATTCCTCGGAGACATCAAACGGGCATTCGATAACAACAAGGACCTTCCAAACCTTCTTCTTGATGCTTTCTTCACCAAGGCCATTTCTGAAGCGAATGTAGGAATTTGCTATGAATTTGAAAGATTTCACTAAAAACAAAAAGAAGTTGTAGCAAACAAAAAAATTGCATTCCAACAAGAGAAAATTATGATTCTTTGAGGCCACAAATCACATTTGTAATCTCAAATTTCCAGGATTCGTGGCGCGTCGTGGTCGGTGCCGCCATTCGTCTAGAAATCCCTGTTCCAGCCTTCTCGTCGGCTTTAGCATTCTACGATGGGTACAAGAGAAAGGTAGCGATTTTATATAGCATACGAGTATCTAAACTCTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCAAAGAAGAGCGTGTTTAT</pcr_primer_p1>
		<pcr_primer_p2>GTCTTACCTCGATCGAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTCAAAGAAGAGCGTGTTTATGCTTCGGAGCATCTCTCAGGTCCCCATGTTGCCCCGGAAACTGTCATTCAGGACAAGAGAGTGTTCATCAAGCAGATCAGCAAGGCTCTGTACGCTTCCAAAATCGTCAGCTACGCTCAAGGATTCATGCTCCTTGCCGAGACTTCCAAGCAATTCAACTGGGATTTGAATTTCGGAGCCATCGCCTTGATGTGGAGAGGAGGATGCATCATTCGATCGAGGTAAGAC</canonical_amplicon>
		<polymorphic_amplicon>TCTCAAAGAAGAGCGTGTTTATGCTTCGGAGCATCTCTCAGGTCCCCATGTTGCCCCGGAAACTGTCATTCAGGACAAGAGAGTGTTCATCAAGCAGATCAGCAAGGCTCTGTACGCTTCCAAAATCGTCAGCTACGCTCAAGGATTCATGCTCCTTGCCGAGRCTTCCAAGCAATTCAACTGGGATTTGAATTTCGGAGCCATCGCCTTGATGTGGAGAGGAGGATGCATCATTCGATCGAGGTAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3967</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>91668</contig_pos>
        <strand>+</strand>
        <context>GTGTAATGCC[A/G]AAAGTGctct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAACATTTCCGAATCCCTTTACAGCTGCTCTGGAAAGAGGTGTAATGCC</left_flank>
        <right_flank>AAAGTGCTCTAATAGAAGCCGACGCTGTATGTGAATTTTGAACACAATTA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCCATTGCTCCAGAAGCGATGAAAGACACTTGTGGCTCTGAAAACGGTAGATTTTGTTATTTATTTTGAATAATAGCTCACGAATTGCATAACCGATATGTTTGTGTCGAATGAAAACGATAACCATTTGACTCCAGGCACGGTGAGAGAGATACATGCGATGTCCACTAAAAAGTGGCTCCAGAATCCGACGGGCTTCTTCGTGGAACGTTCTGAAATATATATGATCTGTCATAGATTCCGTTCCATGAAACTCACGGAGCTGTGGATGGGATTTCTTGAAGAGAAATGAACACCAAGTCGCTCTCCATTTCTTCACCTCGATCCACAATTTTCTGTGCAAGATGGTTGAGCACTTTGGCACCCTTCTCGTTGATATTCCACGTCACCGCACACACCTTCAGTTTTCGATCTCCCATGGTTTCAACGACATCGTAGCTGACAATCGGAACATTTCCGAATCCCTTTACAGCTGCTCTGGAAAGAGGTGTAATGCCAAAAGTGCTCTAATAGAAGCCGACGCTGTATGTGAATTTTGAACACAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTTTTGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTGTCTCTCCTAATAAAGGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAGATATAAAAAATTTGTCAATTGATAAAATACTGGTCATATCATGGTAAACACATTGCTAGTTGACAAATTTTTCATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTGCACGTAAAGGATATGCTTCTATCAAATAATTCAGGTCAGAAAAATATACAATGTAACACTTACGGAGGGGGTTGAGTGTCAATGAGGAATGTCCAATTGCCGTCGCTGATTTCGTTGACTGCAAAAAATG</canonical>
            <polymorphic>TTGCCATTGCTCCAGAAGCGATGAAAGACACTTGTGGCTCTGAAAACGGTAGATTTTGTTATTTATTTTGAATAATAGCTCACGAATTGCATAACCGATATGTTTGTGTCGAATGAAAACGATAACCATTTGACTCCAGGCACGGTGAGAGAGATACATGCGATGTCCACTAAAAAGTGGCTCCAGAATCCGACGGGCTTCTTCGTGGAACGTTCTGAAATATATATGATCTGTCATAGATTCCGTTCCATGAAACTCACGGAGCTGTGGATGGGATTTCTTGAAGAGAAATGAACACCAAGTCGCTCTCCATTTCTTCACCTCGATCCACAATTTTCTGTGCAAGATGGTTGAGCACTTTGGCACCCTTCTCGTTGATATTCCACGTCACCGCACACACCTTCAGTTTTCGATCTCCCATGGTTTCAACGACATCGTAGCTGACAATCGGAACATTTCCGAATCCCTTTACAGCTGCTCTGGAAAGAGGTGTAATGCCRAAAGTGCTCTAATAGAAGCCGACGCTGTATGTGAATTTTGAACACAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTTTTGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTGTCTCTCCTAATAAAGGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAGATATAAAAAATTTGTCAATTGATAAAATACTGGTCATATCATGGTAAACACATTGCTAGTTGACAAATTTTTCATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTGCACGTAAAGGATATGCTTCTATCAAATAATTCAGGTCAGAAAAATATACAATGTAACACTTACGGAGGGGGTTGAGTGTCAATGAGGAATGTCCAATTGCCGTCGCTGATTTCGTTGACTGCAAAAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGCTGACAATCGGAACATT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCTGACCTGAATTATTTG</pcr_primer_p2>
		<pcr_amplicon_size>478</pcr_amplicon_size>
		<canonical_amplicon>TAGCTGACAATCGGAACATTTCCGAATCCCTTTACAGCTGCTCTGGAAAGAGGTGTAATGCCAAAAGTGCTCTAATAGAAGCCGACGCTGTATGTGAATTTTGAACACAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTTTTGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTGTCTCTCCTAATAAAGGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAGATATAAAAAATTTGTCAATTGATAAAATACTGGTCATATCATGGTAAACACATTGCTAGTTGACAAATTTTTCATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTGCACGTAAAGGATATGCTTCTATCAAATAATTCAGGTCAGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TAGCTGACAATCGGAACATTTCCGAATCCCTTTACAGCTGCTCTGGAAAGAGGTGTAATGCCRAAAGTGCTCTAATAGAAGCCGACGCTGTATGTGAATTTTGAACACAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTTTTGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTGTCTCTCCTAATAAAGGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAGATATAAAAAATTTGTCAATTGATAAAATACTGGTCATATCATGGTAAACACATTGCTAGTTGACAAATTTTTCATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTGCACGTAAAGGATATGCTTCTATCAAATAATTCAGGTCAGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3968</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>91641</contig_pos>
        <strand>+</strand>
        <context>ATCCCTTTAC[A/T]GCTGCTCTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTTCAACGACATCGTAGCTGACAATCGGAACATTTCCGAATCCCTTTAC</left_flank>
        <right_flank>GCTGCTCTGGAAAGAGGTGTAATGCCAAAAGTGCTCTAATAGAAGCCGAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATTGCTCCTTTTGTTCTGACGGGTTTTGCCATTGCTCCAGAAGCGATGAAAGACACTTGTGGCTCTGAAAACGGTAGATTTTGTTATTTATTTTGAATAATAGCTCACGAATTGCATAACCGATATGTTTGTGTCGAATGAAAACGATAACCATTTGACTCCAGGCACGGTGAGAGAGATACATGCGATGTCCACTAAAAAGTGGCTCCAGAATCCGACGGGCTTCTTCGTGGAACGTTCTGAAATATATATGATCTGTCATAGATTCCGTTCCATGAAACTCACGGAGCTGTGGATGGGATTTCTTGAAGAGAAATGAACACCAAGTCGCTCTCCATTTCTTCACCTCGATCCACAATTTTCTGTGCAAGATGGTTGAGCACTTTGGCACCCTTCTCGTTGATATTCCACGTCACCGCACACACCTTCAGTTTTCGATCTCCCATGGTTTCAACGACATCGTAGCTGACAATCGGAACATTTCCGAATCCCTTTACAGCTGCTCTGGAAAGAGGTGTAATGCCAAAAGTGCTCTAATAGAAGCCGACGCTGTATGTGAATTTTGAACACAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTTTTGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTGTCTCTCCTAATAAAGGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAGATATAAAAAATTTGTCAATTGATAAAATACTGGTCATATCATGGTAAACACATTGCTAGTTGACAAATTTTTCATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTGCACGTAAAGGATATGCTTCTATCAAATAATTCAGGTCAGAAAAATATACAATGTAACACTTACGGAGGGGGTTGAGTGTCAATGAGGAATGTCCAATTGCCGT</canonical>
            <polymorphic>CAATTGCTCCTTTTGTTCTGACGGGTTTTGCCATTGCTCCAGAAGCGATGAAAGACACTTGTGGCTCTGAAAACGGTAGATTTTGTTATTTATTTTGAATAATAGCTCACGAATTGCATAACCGATATGTTTGTGTCGAATGAAAACGATAACCATTTGACTCCAGGCACGGTGAGAGAGATACATGCGATGTCCACTAAAAAGTGGCTCCAGAATCCGACGGGCTTCTTCGTGGAACGTTCTGAAATATATATGATCTGTCATAGATTCCGTTCCATGAAACTCACGGAGCTGTGGATGGGATTTCTTGAAGAGAAATGAACACCAAGTCGCTCTCCATTTCTTCACCTCGATCCACAATTTTCTGTGCAAGATGGTTGAGCACTTTGGCACCCTTCTCGTTGATATTCCACGTCACCGCACACACCTTCAGTTTTCGATCTCCCATGGTTTCAACGACATCGTAGCTGACAATCGGAACATTTCCGAATCCCTTTACWGCTGCTCTGGAAAGAGGTGTAATGCCAAAAGTGCTCTAATAGAAGCCGACGCTGTATGTGAATTTTGAACACAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTTTTGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTGTCTCTCCTAATAAAGGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAGATATAAAAAATTTGTCAATTGATAAAATACTGGTCATATCATGGTAAACACATTGCTAGTTGACAAATTTTTCATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTGCACGTAAAGGATATGCTTCTATCAAATAATTCAGGTCAGAAAAATATACAATGTAACACTTACGGAGGGGGTTGAGTGTCAATGAGGAATGTCCAATTGCCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>258 186 176 129 112 105 34</canonical_bands>
                <polymorphic_bands>292 186 176 129 112 105</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>190 176 129 112 102 67 64 44 41 34 24 17</canonical_bands>
                <polymorphic_bands>190 176 129 112 102 78 67 64 41 24 17</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCTTCAGTTTTCGATCTCC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCTGACCTGAATTATTTG</pcr_primer_p2>
		<pcr_amplicon_size>517</pcr_amplicon_size>
		<canonical_amplicon>ACCTTCAGTTTTCGATCTCCCATGGTTTCAACGACATCGTAGCTGACAATCGGAACATTTCCGAATCCCTTTACAGCTGCTCTGGAAAGAGGTGTAATGCCAAAAGTGCTCTAATAGAAGCCGACGCTGTATGTGAATTTTGAACACAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTTTTGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTGTCTCTCCTAATAAAGGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAGATATAAAAAATTTGTCAATTGATAAAATACTGGTCATATCATGGTAAACACATTGCTAGTTGACAAATTTTTCATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTGCACGTAAAGGATATGCTTCTATCAAATAATTCAGGTCAGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>ACCTTCAGTTTTCGATCTCCCATGGTTTCAACGACATCGTAGCTGACAATCGGAACATTTCCGAATCCCTTTACWGCTGCTCTGGAAAGAGGTGTAATGCCAAAAGTGCTCTAATAGAAGCCGACGCTGTATGTGAATTTTGAACACAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTTTTGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTGTCTCTCCTAATAAAGGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAGATATAAAAAATTTGTCAATTGATAAAATACTGGTCATATCATGGTAAACACATTGCTAGTTGACAAATTTTTCATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTGCACGTAAAGGATATGCTTCTATCAAATAATTCAGGTCAGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3969</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>91458</contig_pos>
        <strand>+</strand>
        <context>CTTGAAGAGA[A/G]ATGAACACCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCCGTTCCATGAAACTCACGGAGCTGTGGATGGGATTTCTTGAAGAGA</left_flank>
        <right_flank>ATGAACACCAAGTCGCTCTCCATTTCTTCACCTCGATCCACAATTTTCTG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAAACTTGGCGAGCTGAGGGAAACGGAGAGTGCGCACCACTTTCGCGTAGTCCTGGATACGGAGCTGTGGTGTGGCGTCTAAAAAGAAACATGGGAATTTGAAGATTTTAGCAAAGACACTTACGGGACAAATGACATCCGATGAGTACTATGAATCGTTGATACAAACGGAGACAAATCGCAATTGCTCCTTTTGTTCTGACGGGTTTTGCCATTGCTCCAGAAGCGATGAAAGACACTTGTGGCTCTGAAAACGGTAGATTTTGTTATTTATTTTGAATAATAGCTCACGAATTGCATAACCGATATGTTTGTGTCGAATGAAAACGATAACCATTTGACTCCAGGCACGGTGAGAGAGATACATGCGATGTCCACTAAAAAGTGGCTCCAGAATCCGACGGGCTTCTTCGTGGAACGTTCTGAAATATATATGATCTGTCATAGATTCCGTTCCATGAAACTCACGGAGCTGTGGATGGGATTTCTTGAAGAGAAATGAACACCAAGTCGCTCTCCATTTCTTCACCTCGATCCACAATTTTCTGTGCAAGATGGTTGAGCACTTTGGCACCCTTCTCGTTGATATTCCACGTCACCGCACACACCTTCAGTTTTCGATCTCCCATGGTTTCAACGACATCGTAGCTGACAATCGGAACATTTCCGAATCCCTTTACAGCTGCTCTGGAAAGAGGTGTAATGCCAAAAGTGCTCTAATAGAAGCCGACGCTGTATGTGAATTTTGAACACAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTTTTGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTGTCTCTCCTAATAAAGGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAGATATAAAAAATTTGTCAATTGATAAAATACTG</canonical>
            <polymorphic>ATGAAACTTGGCGAGCTGAGGGAAACGGAGAGTGCGCACCACTTTCGCGTAGTCCTGGATACGGAGCTGTGGTGTGGCGTCTAAAAAGAAACATGGGAATTTGAAGATTTTAGCAAAGACACTTACGGGACAAATGACATCCGATGAGTACTATGAATCGTTGATACAAACGGAGACAAATCGCAATTGCTCCTTTTGTTCTGACGGGTTTTGCCATTGCTCCAGAAGCGATGAAAGACACTTGTGGCTCTGAAAACGGTAGATTTTGTTATTTATTTTGAATAATAGCTCACGAATTGCATAACCGATATGTTTGTGTCGAATGAAAACGATAACCATTTGACTCCAGGCACGGTGAGAGAGATACATGCGATGTCCACTAAAAAGTGGCTCCAGAATCCGACGGGCTTCTTCGTGGAACGTTCTGAAATATATATGATCTGTCATAGATTCCGTTCCATGAAACTCACGGAGCTGTGGATGGGATTTCTTGAAGAGARATGAACACCAAGTCGCTCTCCATTTCTTCACCTCGATCCACAATTTTCTGTGCAAGATGGTTGAGCACTTTGGCACCCTTCTCGTTGATATTCCACGTCACCGCACACACCTTCAGTTTTCGATCTCCCATGGTTTCAACGACATCGTAGCTGACAATCGGAACATTTCCGAATCCCTTTACAGCTGCTCTGGAAAGAGGTGTAATGCCAAAAGTGCTCTAATAGAAGCCGACGCTGTATGTGAATTTTGAACACAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTTTTGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTGTCTCTCCTAATAAAGGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAGATATAAAAAATTTGTCAATTGATAAAATACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTAAAAAGTGGCTCCAGAAT</pcr_primer_p1>
		<pcr_primer_p2>GAGATCGAAAACTGAAGGTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTAAAAAGTGGCTCCAGAATCCGACGGGCTTCTTCGTGGAACGTTCTGAAATATATATGATCTGTCATAGATTCCGTTCCATGAAACTCACGGAGCTGTGGATGGGATTTCTTGAAGAGAAATGAACACCAAGTCGCTCTCCATTTCTTCACCTCGATCCACAATTTTCTGTGCAAGATGGTTGAGCACTTTGGCACCCTTCTCGTTGATATTCCACGTCACCGCACACACCTTCAGTTTTCGATCTC</canonical_amplicon>
		<polymorphic_amplicon>ACTAAAAAGTGGCTCCAGAATCCGACGGGCTTCTTCGTGGAACGTTCTGAAATATATATGATCTGTCATAGATTCCGTTCCATGAAACTCACGGAGCTGTGGATGGGATTTCTTGAAGAGARATGAACACCAAGTCGCTCTCCATTTCTTCACCTCGATCCACAATTTTCTGTGCAAGATGGTTGAGCACTTTGGCACCCTTCTCGTTGATATTCCACGTCACCGCACACACCTTCAGTTTTCGATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3970</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>91426</contig_pos>
        <strand>+</strand>
        <context>CCATGAAACT[C/T]ACGGAGCTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAACGTTCTGAAATATATATGATCTGTCATAGATTCCGTTCCATGAAACT</left_flank>
        <right_flank>ACGGAGCTGTGGATGGGATTTCTTGAAGAGAAATGAACACCAAGTCGCTC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGAGGCGAAAATCTCGTCGTTTGCATGCGCATGAAACTTGGCGAGCTGAGGGAAACGGAGAGTGCGCACCACTTTCGCGTAGTCCTGGATACGGAGCTGTGGTGTGGCGTCTAAAAAGAAACATGGGAATTTGAAGATTTTAGCAAAGACACTTACGGGACAAATGACATCCGATGAGTACTATGAATCGTTGATACAAACGGAGACAAATCGCAATTGCTCCTTTTGTTCTGACGGGTTTTGCCATTGCTCCAGAAGCGATGAAAGACACTTGTGGCTCTGAAAACGGTAGATTTTGTTATTTATTTTGAATAATAGCTCACGAATTGCATAACCGATATGTTTGTGTCGAATGAAAACGATAACCATTTGACTCCAGGCACGGTGAGAGAGATACATGCGATGTCCACTAAAAAGTGGCTCCAGAATCCGACGGGCTTCTTCGTGGAACGTTCTGAAATATATATGATCTGTCATAGATTCCGTTCCATGAAACTCACGGAGCTGTGGATGGGATTTCTTGAAGAGAAATGAACACCAAGTCGCTCTCCATTTCTTCACCTCGATCCACAATTTTCTGTGCAAGATGGTTGAGCACTTTGGCACCCTTCTCGTTGATATTCCACGTCACCGCACACACCTTCAGTTTTCGATCTCCCATGGTTTCAACGACATCGTAGCTGACAATCGGAACATTTCCGAATCCCTTTACAGCTGCTCTGGAAAGAGGTGTAATGCCAAAAGTGCTCTAATAGAAGCCGACGCTGTATGTGAATTTTGAACACAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTTTTGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTGTCTCTCCTAATAAAGGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAG</canonical>
            <polymorphic>TCAGAGGCGAAAATCTCGTCGTTTGCATGCGCATGAAACTTGGCGAGCTGAGGGAAACGGAGAGTGCGCACCACTTTCGCGTAGTCCTGGATACGGAGCTGTGGTGTGGCGTCTAAAAAGAAACATGGGAATTTGAAGATTTTAGCAAAGACACTTACGGGACAAATGACATCCGATGAGTACTATGAATCGTTGATACAAACGGAGACAAATCGCAATTGCTCCTTTTGTTCTGACGGGTTTTGCCATTGCTCCAGAAGCGATGAAAGACACTTGTGGCTCTGAAAACGGTAGATTTTGTTATTTATTTTGAATAATAGCTCACGAATTGCATAACCGATATGTTTGTGTCGAATGAAAACGATAACCATTTGACTCCAGGCACGGTGAGAGAGATACATGCGATGTCCACTAAAAAGTGGCTCCAGAATCCGACGGGCTTCTTCGTGGAACGTTCTGAAATATATATGATCTGTCATAGATTCCGTTCCATGAAACTYACGGAGCTGTGGATGGGATTTCTTGAAGAGAAATGAACACCAAGTCGCTCTCCATTTCTTCACCTCGATCCACAATTTTCTGTGCAAGATGGTTGAGCACTTTGGCACCCTTCTCGTTGATATTCCACGTCACCGCACACACCTTCAGTTTTCGATCTCCCATGGTTTCAACGACATCGTAGCTGACAATCGGAACATTTCCGAATCCCTTTACAGCTGCTCTGGAAAGAGGTGTAATGCCAAAAGTGCTCTAATAGAAGCCGACGCTGTATGTGAATTTTGAACACAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTTTTGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTGTCTCTCCTAATAAAGGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>119 95 93 66 53 52 46 45 34 33 31 30 28 28 27 26 23 22 20 15 14 12 11 10 10 10 8 6 5 5 5 4 3 3 2 2 2 2</canonical_bands>
                <polymorphic_bands>119 95 93 66 62 53 46 45 34 33 31 30 28 28 27 26 23 22 20 15 14 12 11 10 10 8 6 5 5 5 4 3 3 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAATAGCTCACGAATTGCATA</pcr_primer_p1>
		<pcr_primer_p2>GAAGAAATGGAGAGCGACTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATAATAGCTCACGAATTGCATAACCGATATGTTTGTGTCGAATGAAAACGATAACCATTTGACTCCAGGCACGGTGAGAGAGATACATGCGATGTCCACTAAAAAGTGGCTCCAGAATCCGACGGGCTTCTTCGTGGAACGTTCTGAAATATATATGATCTGTCATAGATTCCGTTCCATGAAACTCACGGAGCTGTGGATGGGATTTCTTGAAGAGAAATGAACACCAAGTCGCTCTCCATTTCTTC</canonical_amplicon>
		<polymorphic_amplicon>AATAATAGCTCACGAATTGCATAACCGATATGTTTGTGTCGAATGAAAACGATAACCATTTGACTCCAGGCACGGTGAGAGAGATACATGCGATGTCCACTAAAAAGTGGCTCCAGAATCCGACGGGCTTCTTCGTGGAACGTTCTGAAATATATATGATCTGTCATAGATTCCGTTCCATGAAACTYACGGAGCTGTGGATGGGATTTCTTGAAGAGAAATGAACACCAAGTCGCTCTCCATTTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3971</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>122496</contig_pos>
        <strand>+</strand>
        <context>GGAAACAAAG[A/G]ACAGTTATTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTACAAAAGGTATCCGTATCTAATCTAAACACTTTCAGTGGAAACAAAG</left_flank>
        <right_flank>ACAGTTATTATTATTCATTTCTCTTTGTCTTCACACCTTTCATTCATTTA</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCACACTCACCCTCACCAATTTTTACATGTGTCACTTATTTTTAATACGGATCAATGATCCAATTTTGAAAGTTTTGAGTCTGGCCTAGAAGTCGAGATGTTTAGAATCCTCGTCCCCGCGCTGACTACAAAGTCTCAATGTGACAGCATTTTATGACCCAGCTGTAAAATATTCCACACTTTGTAACCTAGAGTTTCTGATCATGACATTGAACCCTCAATCCTCTTTTTTTGTTATTTTTATCATTGATATCGGAATGATAAGAATACGCAAAACGACGTATGGAATTGTGGGTTCAATTATGTCTCCAAACGGCCTTTGACCATGACAATATCTACAGTAATCCTCTACGTACCTCTAAAAAGAATAGTTAGATTTCTCTGAACATTTGATTAGTTATAATCAGCAATTCTTGAGCTAAAAAAAATACTGTTTAGTCTATACGATTGTACAAAAGGTATCCGTATCTAATCTAAACACTTTCAGTGGAAACAAAGAACAGTTATTATTATTCATTTCTCTTTGTCTTCACACCTTTCATTCATTTATTCACACTCCTCGTGTTCGTTTTCTTTCTTGTTTTGCCTCACCTTTCCTCACTTTTTCTCCCCTTTCCCGTCTCTCGGAATGACATCAGAATCGAGACTTCCTCTCCGGCTCTCATGATGCTCCGCGCAGCACCGGTTCCTTCTCTTGATATGATATAAAACCAACAGAAAAAATTATTGTACTTGAAAGTCATTTCATTTGCAGAGACAGAGAGATGGCGGGTTACTACCTTTTTCTACAGCTAGGATGTGCATTTGGATTGTTGGCTGTGACGGCTTTTTTTGGATTTATACCTCTATGGGTGAGTGAAATTAGAAAAATTTTGGAATACTGCTTAAAATGTACCGCAAGAAATAGGATTCCAAGGCCTAGAATCTGAAAGAAATATCGTAAACACTACATATTACATAGGATGCCCCCTCGCAACGGCCAACTTTAAGCTCATATAA</canonical>
            <polymorphic>TTCACACTCACCCTCACCAATTTTTACATGTGTCACTTATTTTTAATACGGATCAATGATCCAATTTTGAAAGTTTTGAGTCTGGCCTAGAAGTCGAGATGTTTAGAATCCTCGTCCCCGCGCTGACTACAAAGTCTCAATGTGACAGCATTTTATGACCCAGCTGTAAAATATTCCACACTTTGTAACCTAGAGTTTCTGATCATGACATTGAACCCTCAATCCTCTTTTTTTGTTATTTTTATCATTGATATCGGAATGATAAGAATACGCAAAACGACGTATGGAATTGTGGGTTCAATTATGTCTCCAAACGGCCTTTGACCATGACAATATCTACAGTAATCCTCTACGTACCTCTAAAAAGAATAGTTAGATTTCTCTGAACATTTGATTAGTTATAATCAGCAATTCTTGAGCTAAAAAAAATACTGTTTAGTCTATACGATTGTACAAAAGGTATCCGTATCTAATCTAAACACTTTCAGTGGAAACAAAGRACAGTTATTATTATTCATTTCTCTTTGTCTTCACACCTTTCATTCATTTATTCACACTCCTCGTGTTCGTTTTCTTTCTTGTTTTGCCTCACCTTTCCTCACTTTTTCTCCCCTTTCCCGTCTCTCGGAATGACATCAGAATCGAGACTTCCTCTCCGGCTCTCATGATGCTCCGCGCAGCACCGGTTCCTTCTCTTGATATGATATAAAACCAACAGAAAAAATTATTGTACTTGAAAGTCATTTCATTTGCAGAGACAGAGAGATGGCGGGTTACTACCTTTTTCTACAGCTAGGATGTGCATTTGGATTGTTGGCTGTGACGGCTTTTTTTGGATTTATACCTCTATGGGTGAGTGAAATTAGAAAAATTTTGGAATACTGCTTAAAATGTACCGCAAGAAATAGGATTCCAAGGCCTAGAATCTGAAAGAAATATCGTAAACACTACATATTACATAGGATGCCCCCTCGCAACGGCCAACTTTAAGCTCATATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTTGACCATGACAATATCTAC</pcr_primer_p1>
		<pcr_primer_p2>AACACGAGGAGTGTGAATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTTTGACCATGACAATATCTACAGTAATCCTCTACGTACCTCTAAAAAGAATAGTTAGATTTCTCTGAACATTTGATTAGTTATAATCAGCAATTCTTGAGCTAAAAAAAATACTGTTTAGTCTATACGATTGTACAAAAGGTATCCGTATCTAATCTAAACACTTTCAGTGGAAACAAAGAACAGTTATTATTATTCATTTCTCTTTGTCTTCACACCTTTCATTCATTTATTCACACTCCTCGTGTT</canonical_amplicon>
		<polymorphic_amplicon>CCTTTGACCATGACAATATCTACAGTAATCCTCTACGTACCTCTAAAAAGAATAGTTAGATTTCTCTGAACATTTGATTAGTTATAATCAGCAATTCTTGAGCTAAAAAAAATACTGTTTAGTCTATACGATTGTACAAAAGGTATCCGTATCTAATCTAAACACTTTCAGTGGAAACAAAGRACAGTTATTATTATTCATTTCTCTTTGTCTTCACACCTTTCATTCATTTATTCACACTCCTCGTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3972</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>122593</contig_pos>
        <strand>+</strand>
        <context>CCTCACCTTT[C/T]CTCACTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTATTCACACTCCTCGTGTTCGTTTTCTTTCTTGTTTTGCCTCACCTTT</left_flank>
        <right_flank>CTCACTTTTTCTCCCCTTTCCCGTCTCTCGGAATGACATCAGAATCGAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGTTTAGAATCCTCGTCCCCGCGCTGACTACAAAGTCTCAATGTGACAGCATTTTATGACCCAGCTGTAAAATATTCCACACTTTGTAACCTAGAGTTTCTGATCATGACATTGAACCCTCAATCCTCTTTTTTTGTTATTTTTATCATTGATATCGGAATGATAAGAATACGCAAAACGACGTATGGAATTGTGGGTTCAATTATGTCTCCAAACGGCCTTTGACCATGACAATATCTACAGTAATCCTCTACGTACCTCTAAAAAGAATAGTTAGATTTCTCTGAACATTTGATTAGTTATAATCAGCAATTCTTGAGCTAAAAAAAATACTGTTTAGTCTATACGATTGTACAAAAGGTATCCGTATCTAATCTAAACACTTTCAGTGGAAACAAAGAACAGTTATTATTATTCATTTCTCTTTGTCTTCACACCTTTCATTCATTTATTCACACTCCTCGTGTTCGTTTTCTTTCTTGTTTTGCCTCACCTTTCCTCACTTTTTCTCCCCTTTCCCGTCTCTCGGAATGACATCAGAATCGAGACTTCCTCTCCGGCTCTCATGATGCTCCGCGCAGCACCGGTTCCTTCTCTTGATATGATATAAAACCAACAGAAAAAATTATTGTACTTGAAAGTCATTTCATTTGCAGAGACAGAGAGATGGCGGGTTACTACCTTTTTCTACAGCTAGGATGTGCATTTGGATTGTTGGCTGTGACGGCTTTTTTTGGATTTATACCTCTATGGGTGAGTGAAATTAGAAAAATTTTGGAATACTGCTTAAAATGTACCGCAAGAAATAGGATTCCAAGGCCTAGAATCTGAAAGAAATATCGTAAACACTACATATTACATAGGATGCCCCCTCGCAACGGCCAACTTTAAGCTCATATAACTCATTTCCGGTCAGAGATATCAGAAAGTAATCAACTGATAAAATGTTAATCATAATGTCACAAACATTTTATTTGTTGACTTATTTTGGATACCTC</canonical>
            <polymorphic>GATGTTTAGAATCCTCGTCCCCGCGCTGACTACAAAGTCTCAATGTGACAGCATTTTATGACCCAGCTGTAAAATATTCCACACTTTGTAACCTAGAGTTTCTGATCATGACATTGAACCCTCAATCCTCTTTTTTTGTTATTTTTATCATTGATATCGGAATGATAAGAATACGCAAAACGACGTATGGAATTGTGGGTTCAATTATGTCTCCAAACGGCCTTTGACCATGACAATATCTACAGTAATCCTCTACGTACCTCTAAAAAGAATAGTTAGATTTCTCTGAACATTTGATTAGTTATAATCAGCAATTCTTGAGCTAAAAAAAATACTGTTTAGTCTATACGATTGTACAAAAGGTATCCGTATCTAATCTAAACACTTTCAGTGGAAACAAAGAACAGTTATTATTATTCATTTCTCTTTGTCTTCACACCTTTCATTCATTTATTCACACTCCTCGTGTTCGTTTTCTTTCTTGTTTTGCCTCACCTTTYCTCACTTTTTCTCCCCTTTCCCGTCTCTCGGAATGACATCAGAATCGAGACTTCCTCTCCGGCTCTCATGATGCTCCGCGCAGCACCGGTTCCTTCTCTTGATATGATATAAAACCAACAGAAAAAATTATTGTACTTGAAAGTCATTTCATTTGCAGAGACAGAGAGATGGCGGGTTACTACCTTTTTCTACAGCTAGGATGTGCATTTGGATTGTTGGCTGTGACGGCTTTTTTTGGATTTATACCTCTATGGGTGAGTGAAATTAGAAAAATTTTGGAATACTGCTTAAAATGTACCGCAAGAAATAGGATTCCAAGGCCTAGAATCTGAAAGAAATATCGTAAACACTACATATTACATAGGATGCCCCCTCGCAACGGCCAACTTTAAGCTCATATAACTCATTTCCGGTCAGAGATATCAGAAAGTAATCAACTGATAAAATGTTAATCATAATGTCACAAACATTTTATTTGTTGACTTATTTTGGATACCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCTCTTTGTCTTCACACCTT</pcr_primer_p1>
		<pcr_primer_p2>CTCTCTGTCTCTGCAAATGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTCTCTTTGTCTTCACACCTTTCATTCATTTATTCACACTCCTCGTGTTCGTTTTCTTTCTTGTTTTGCCTCACCTTTCCTCACTTTTTCTCCCCTTTCCCGTCTCTCGGAATGACATCAGAATCGAGACTTCCTCTCCGGCTCTCATGATGCTCCGCGCAGCACCGGTTCCTTCTCTTGATATGATATAAAACCAACAGAAAAAATTATTGTACTTGAAAGTCATTTCATTTGCAGAGACAGAGAG</canonical_amplicon>
		<polymorphic_amplicon>ATTTCTCTTTGTCTTCACACCTTTCATTCATTTATTCACACTCCTCGTGTTCGTTTTCTTTCTTGTTTTGCCTCACCTTTYCTCACTTTTTCTCCCCTTTCCCGTCTCTCGGAATGACATCAGAATCGAGACTTCCTCTCCGGCTCTCATGATGCTCCGCGCAGCACCGGTTCCTTCTCTTGATATGATATAAAACCAACAGAAAAAATTATTGTACTTGAAAGTCATTTCATTTGCAGAGACAGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3973</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>122910</contig_pos>
        <strand>+</strand>
        <context>AATAGGATTC[C/T]AAGGCCTAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGAAAAATTTTGGAATACTGCTTAAAATGTACCGCAAGAAATAGGATTC</left_flank>
        <right_flank>AAGGCCTAGAATCTGAAAGAAATATCGTAAACACTACATATTACATAGGA</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAGCTAAAAAAAATACTGTTTAGTCTATACGATTGTACAAAAGGTATCCGTATCTAATCTAAACACTTTCAGTGGAAACAAAGAACAGTTATTATTATTCATTTCTCTTTGTCTTCACACCTTTCATTCATTTATTCACACTCCTCGTGTTCGTTTTCTTTCTTGTTTTGCCTCACCTTTCCTCACTTTTTCTCCCCTTTCCCGTCTCTCGGAATGACATCAGAATCGAGACTTCCTCTCCGGCTCTCATGATGCTCCGCGCAGCACCGGTTCCTTCTCTTGATATGATATAAAACCAACAGAAAAAATTATTGTACTTGAAAGTCATTTCATTTGCAGAGACAGAGAGATGGCGGGTTACTACCTTTTTCTACAGCTAGGATGTGCATTTGGATTGTTGGCTGTGACGGCTTTTTTTGGATTTATACCTCTATGGGTGAGTGAAATTAGAAAAATTTTGGAATACTGCTTAAAATGTACCGCAAGAAATAGGATTCCAAGGCCTAGAATCTGAAAGAAATATCGTAAACACTACATATTACATAGGATGCCCCCTCGCAACGGCCAACTTTAAGCTCATATAACTCATTTCCGGTCAGAGATATCAGAAAGTAATCAACTGATAAAATGTTAATCATAATGTCACAAACATTTTATTTGTTGACTTATTTTGGATACCTCTGACAAGGAGTCGTAAATTCTGAAAAAAGAATCTGGAGTTTTTCCTCTGTTTTTAACAAGTACATCCTTCAAAAACCTAGGTAAATATGTCCAGAGCACAAAAATTCAAGTCCATTCGATAATTTCCAACTTTATTTCAGCTTCTCGAATTCCTGCGGAAGAAGGGAAAGGACCAATCGGAAAGCGGATGGCTGTCATACCTCTCGTGTTTCTCAGGAGGAGTATTTATGGCGACCTGCTTCCTAGATGTCATCCCTCATGTTAGGTAAGTCTTGTAGTCCTTTATTCTTTAAAAGATTCAATTCCAATTTTCAGCG</canonical>
            <polymorphic>TTGAGCTAAAAAAAATACTGTTTAGTCTATACGATTGTACAAAAGGTATCCGTATCTAATCTAAACACTTTCAGTGGAAACAAAGAACAGTTATTATTATTCATTTCTCTTTGTCTTCACACCTTTCATTCATTTATTCACACTCCTCGTGTTCGTTTTCTTTCTTGTTTTGCCTCACCTTTCCTCACTTTTTCTCCCCTTTCCCGTCTCTCGGAATGACATCAGAATCGAGACTTCCTCTCCGGCTCTCATGATGCTCCGCGCAGCACCGGTTCCTTCTCTTGATATGATATAAAACCAACAGAAAAAATTATTGTACTTGAAAGTCATTTCATTTGCAGAGACAGAGAGATGGCGGGTTACTACCTTTTTCTACAGCTAGGATGTGCATTTGGATTGTTGGCTGTGACGGCTTTTTTTGGATTTATACCTCTATGGGTGAGTGAAATTAGAAAAATTTTGGAATACTGCTTAAAATGTACCGCAAGAAATAGGATTCYAAGGCCTAGAATCTGAAAGAAATATCGTAAACACTACATATTACATAGGATGCCCCCTCGCAACGGCCAACTTTAAGCTCATATAACTCATTTCCGGTCAGAGATATCAGAAAGTAATCAACTGATAAAATGTTAATCATAATGTCACAAACATTTTATTTGTTGACTTATTTTGGATACCTCTGACAAGGAGTCGTAAATTCTGAAAAAAGAATCTGGAGTTTTTCCTCTGTTTTTAACAAGTACATCCTTCAAAAACCTAGGTAAATATGTCCAGAGCACAAAAATTCAAGTCCATTCGATAATTTCCAACTTTATTTCAGCTTCTCGAATTCCTGCGGAAGAAGGGAAAGGACCAATCGGAAAGCGGATGGCTGTCATACCTCTCGTGTTTCTCAGGAGGAGTATTTATGGCGACCTGCTTCCTAGATGTCATCCCTCATGTTAGGTAAGTCTTGTAGTCCTTTATTCTTTAAAAGATTCAATTCCAATTTTCAGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>499 260 241</canonical_bands>
                <polymorphic_bands>759 241</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>499 260 241</canonical_bands>
                <polymorphic_bands>759 241</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGGGTGAGTGAAATTAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAGAGGAAAAACTCCAGATTC</pcr_primer_p2>
		<pcr_amplicon_size>299</pcr_amplicon_size>
		<canonical_amplicon>TATGGGTGAGTGAAATTAGAAAAATTTTGGAATACTGCTTAAAATGTACCGCAAGAAATAGGATTCCAAGGCCTAGAATCTGAAAGAAATATCGTAAACACTACATATTACATAGGATGCCCCCTCGCAACGGCCAACTTTAAGCTCATATAACTCATTTCCGGTCAGAGATATCAGAAAGTAATCAACTGATAAAATGTTAATCATAATGTCACAAACATTTTATTTGTTGACTTATTTTGGATACCTCTGACAAGGAGTCGTAAATTCTGAAAAAAGAATCTGGAGTTTTTCCTCTG</canonical_amplicon>
		<polymorphic_amplicon>TATGGGTGAGTGAAATTAGAAAAATTTTGGAATACTGCTTAAAATGTACCGCAAGAAATAGGATTCYAAGGCCTAGAATCTGAAAGAAATATCGTAAACACTACATATTACATAGGATGCCCCCTCGCAACGGCCAACTTTAAGCTCATATAACTCATTTCCGGTCAGAGATATCAGAAAGTAATCAACTGATAAAATGTTAATCATAATGTCACAAACATTTTATTTGTTGACTTATTTTGGATACCTCTGACAAGGAGTCGTAAATTCTGAAAAAAGAATCTGGAGTTTTTCCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3974</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>122935</contig_pos>
        <strand>+</strand>
        <context>GAAAGAAATA[C/T]CGTAAACACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATGTACCGCAAGAAATAGGATTCCAAGGCCTAGAATCTGAAAGAAATA</left_flank>
        <right_flank>CGTAAACACTACATATTACATAGGATGCCCCCTCGCAACGGCCAACTTTA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTATACGATTGTACAAAAGGTATCCGTATCTAATCTAAACACTTTCAGTGGAAACAAAGAACAGTTATTATTATTCATTTCTCTTTGTCTTCACACCTTTCATTCATTTATTCACACTCCTCGTGTTCGTTTTCTTTCTTGTTTTGCCTCACCTTTCCTCACTTTTTCTCCCCTTTCCCGTCTCTCGGAATGACATCAGAATCGAGACTTCCTCTCCGGCTCTCATGATGCTCCGCGCAGCACCGGTTCCTTCTCTTGATATGATATAAAACCAACAGAAAAAATTATTGTACTTGAAAGTCATTTCATTTGCAGAGACAGAGAGATGGCGGGTTACTACCTTTTTCTACAGCTAGGATGTGCATTTGGATTGTTGGCTGTGACGGCTTTTTTTGGATTTATACCTCTATGGGTGAGTGAAATTAGAAAAATTTTGGAATACTGCTTAAAATGTACCGCAAGAAATAGGATTCCAAGGCCTAGAATCTGAAAGAAATATCGTAAACACTACATATTACATAGGATGCCCCCTCGCAACGGCCAACTTTAAGCTCATATAACTCATTTCCGGTCAGAGATATCAGAAAGTAATCAACTGATAAAATGTTAATCATAATGTCACAAACATTTTATTTGTTGACTTATTTTGGATACCTCTGACAAGGAGTCGTAAATTCTGAAAAAAGAATCTGGAGTTTTTCCTCTGTTTTTAACAAGTACATCCTTCAAAAACCTAGGTAAATATGTCCAGAGCACAAAAATTCAAGTCCATTCGATAATTTCCAACTTTATTTCAGCTTCTCGAATTCCTGCGGAAGAAGGGAAAGGACCAATCGGAAAGCGGATGGCTGTCATACCTCTCGTGTTTCTCAGGAGGAGTATTTATGGCGACCTGCTTCCTAGATGTCATCCCTCATGTTAGGTAAGTCTTGTAGTCCTTTATTCTTTAAAAGATTCAATTCCAATTTTCAGCGAGAATTATCAAAAAATGATTGAAGA</canonical>
            <polymorphic>TCTATACGATTGTACAAAAGGTATCCGTATCTAATCTAAACACTTTCAGTGGAAACAAAGAACAGTTATTATTATTCATTTCTCTTTGTCTTCACACCTTTCATTCATTTATTCACACTCCTCGTGTTCGTTTTCTTTCTTGTTTTGCCTCACCTTTCCTCACTTTTTCTCCCCTTTCCCGTCTCTCGGAATGACATCAGAATCGAGACTTCCTCTCCGGCTCTCATGATGCTCCGCGCAGCACCGGTTCCTTCTCTTGATATGATATAAAACCAACAGAAAAAATTATTGTACTTGAAAGTCATTTCATTTGCAGAGACAGAGAGATGGCGGGTTACTACCTTTTTCTACAGCTAGGATGTGCATTTGGATTGTTGGCTGTGACGGCTTTTTTTGGATTTATACCTCTATGGGTGAGTGAAATTAGAAAAATTTTGGAATACTGCTTAAAATGTACCGCAAGAAATAGGATTCCAAGGCCTAGAATCTGAAAGAAATAYCGTAAACACTACATATTACATAGGATGCCCCCTCGCAACGGCCAACTTTAAGCTCATATAACTCATTTCCGGTCAGAGATATCAGAAAGTAATCAACTGATAAAATGTTAATCATAATGTCACAAACATTTTATTTGTTGACTTATTTTGGATACCTCTGACAAGGAGTCGTAAATTCTGAAAAAAGAATCTGGAGTTTTTCCTCTGTTTTTAACAAGTACATCCTTCAAAAACCTAGGTAAATATGTCCAGAGCACAAAAATTCAAGTCCATTCGATAATTTCCAACTTTATTTCAGCTTCTCGAATTCCTGCGGAAGAAGGGAAAGGACCAATCGGAAAGCGGATGGCTGTCATACCTCTCGTGTTTCTCAGGAGGAGTATTTATGGCGACCTGCTTCCTAGATGTCATCCCTCATGTTAGGTAAGTCTTGTAGTCCTTTATTCTTTAAAAGATTCAATTCCAATTTTCAGCGAGAATTATCAAAAAATGATTGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAAAATGTACCGCAAGAAATAG</pcr_primer_p1>
		<pcr_primer_p2>CAGAGGAAAAACTCCAGATTC</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>TTAAAATGTACCGCAAGAAATAGGATTCCAAGGCCTAGAATCTGAAAGAAATATCGTAAACACTACATATTACATAGGATGCCCCCTCGCAACGGCCAACTTTAAGCTCATATAACTCATTTCCGGTCAGAGATATCAGAAAGTAATCAACTGATAAAATGTTAATCATAATGTCACAAACATTTTATTTGTTGACTTATTTTGGATACCTCTGACAAGGAGTCGTAAATTCTGAAAAAAGAATCTGGAGTTTTTCCTCTG</canonical_amplicon>
		<polymorphic_amplicon>TTAAAATGTACCGCAAGAAATAGGATTCCAAGGCCTAGAATCTGAAAGAAATAYCGTAAACACTACATATTACATAGGATGCCCCCTCGCAACGGCCAACTTTAAGCTCATATAACTCATTTCCGGTCAGAGATATCAGAAAGTAATCAACTGATAAAATGTTAATCATAATGTCACAAACATTTTATTTGTTGACTTATTTTGGATACCTCTGACAAGGAGTCGTAAATTCTGAAAAAAGAATCTGGAGTTTTTCCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3975</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>126528</contig_pos>
        <strand></strand>
        <context>TTCTCTTTTT[G/A]GGATAGTGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATCCGGTGTTGTTTCGAATTACTTCTTCTTCTTCTTCTTATTCTCTTTTT</left_flank>
        <right_flank>GGATAGTGGTTAGCCCTTCTCCAATTTACTCTTCATTCCGTAGTTTTCTA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTACTGAGAAAGGGCCGGCGGGCCGGGCCGGCAAAATTGTCGCTTTGACCCGGCCCGGCCCGGCCCGTTGCAAGTATGGTACAAACTTGAGTCCGAGTGATTATGCGCCACCCGGTATTATACAGATAATCATATTAATCGAAGTTAAACTCCAAAACTTCTAAACTGAAAACCGAATCCATTTTCTTGAGGTTTTTTTTTAAATTTCTTTAGGACCAAGTATTCCTCCCTACTTTTTCAAACAACAGTATGTTTAAATATTCATTGATGATCTTACCAAAACCAAACAGAAAAGAGTTTACAAGAAATGGTGATGTAGAGAATAGAATGAGAATCAGAAGCATCATATGTTTTGGAGATGTTCCACGAAAATGAGAAATTGAAAAGAAACAAAACGGTTTAAGTATGGAAAAGTGGGGAGGTGGGGGATTAGTTGAACGTCTCGGATCCGGTGTTGTTTCGAATTACTTCTTCTTCTTCTTCTTATTCTCTTTTTGGGATAGTGGTTAGCCCTTCTCCAATTTACTCTTCATTCCGTAGTTTTCTACTTTTTTATTTCATTTCTTCATTTCGGGACATTAATCGTTTTGTGGATTCAGGGAGAGCGAGGGTTTCCTGCCTTTTTTTGGATTCGGAAAGCTGCTAAAGGAGGGACGGAGATGGATAGAGATCAGATGATGAGTGTAGATTTTTGAGGGATTCAGAAGAAGTGCAGATTCATACAGAGAACTCTTCATTCGCTTTCACTTCCGCTCGGATTATTTCATTTCGGACTAGATCGTACTCAATGTCGAACGATCTTTTGACCATTGATCTGCAAAAATAACGATGGGTTTAGCAAACGCCAGAAGTCATAAAGGAGTCTGGCGGATTCTGAAGGTGATTCAGAAACAAGGTAAAATGACTTTTTTAAATTTGATAAGAGTTAGTGAACTAAATTCATTAGGGCTACAAAAACCATCAGTGTTCTAGAAGTTTTTGAACCGGATATATGCGC</canonical>
            <polymorphic>TTTTTACTGAGAAAGGGCCGGCGGGCCGGGCCGGCAAAATTGTCGCTTTGACCCGGCCCGGCCCGGCCCGTTGCAAGTATGGTACAAACTTGAGTCCGAGTGATTATGCGCCACCCGGTATTATACAGATAATCATATTAATCGAAGTTAAACTCCAAAACTTCTAAACTGAAAACCGAATCCATTTTCTTGAGGTTTTTTTTTAAATTTCTTTAGGACCAAGTATTCCTCCCTACTTTTTCAAACAACAGTATGTTTAAATATTCATTGATGATCTTACCAAAACCAAACAGAAAAGAGTTTACAAGAAATGGTGATGTAGAGAATAGAATGAGAATCAGAAGCATCATATGTTTTGGAGATGTTCCACGAAAATGAGAAATTGAAAAGAAACAAAACGGTTTAAGTATGGAAAAGTGGGGAGGTGGGGGATTAGTTGAACGTCTCGGATCCGGTGTTGTTTCGAATTACTTCTTCTTCTTCTTCTTATTCTCTTTTTRGGATAGTGGTTAGCCCTTCTCCAATTTACTCTTCATTCCGTAGTTTTCTACTTTTTTATTTCATTTCTTCATTTCGGGACATTAATCGTTTTGTGGATTCAGGGAGAGCGAGGGTTTCCTGCCTTTTTTTGGATTCGGAAAGCTGCTAAAGGAGGGACGGAGATGGATAGAGATCAGATGATGAGTGTAGATTTTTGAGGGATTCAGAAGAAGTGCAGATTCATACAGAGAACTCTTCATTCGCTTTCACTTCCGCTCGGATTATTTCATTTCGGACTAGATCGTACTCAATGTCGAACGATCTTTTGACCATTGATCTGCAAAAATAACGATGGGTTTAGCAAACGCCAGAAGTCATAAAGGAGTCTGGCGGATTCTGAAGGTGATTCAGAAACAAGGTAAAATGACTTTTTTAAATTTGATAAGAGTTAGTGAACTAAATTCATTAGGGCTACAAAAACCATCAGTGTTCTAGAAGTTTTTGAACCGGATATATGCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATGAGAATCAGAAGCATCATA</pcr_primer_p1>
		<pcr_primer_p2>CGAAATGAAGAAATGAAATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAATGAGAATCAGAAGCATCATATGTTTTGGAGATGTTCCACGAAAATGAGAAATTGAAAAGAAACAAAACGGTTTAAGTATGGAAAAGTGGGGAGGTGGGGGATTAGTTGAACGTCTCGGATCCGGTGTTGTTTCGAATTACTTCTTCTTCTTCTTCTTATTCTCTTTTTGGGATAGTGGTTAGCCCTTCTCCAATTTACTCTTCATTCCGTAGTTTTCTACTTTTTTATTTCATTTCTTCATTTCG</canonical_amplicon>
		<polymorphic_amplicon>GAATGAGAATCAGAAGCATCATATGTTTTGGAGATGTTCCACGAAAATGAGAAATTGAAAAGAAACAAAACGGTTTAAGTATGGAAAAGTGGGGAGGTGGGGGATTAGTTGAACGTCTCGGATCCGGTGTTGTTTCGAATTACTTCTTCTTCTTCTTCTTATTCTCTTTTTRGGATAGTGGTTAGCCCTTCTCCAATTTACTCTTCATTCCGTAGTTTTCTACTTTTTTATTTCATTTCTTCATTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3976</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>126343</contig_pos>
        <strand>+</strand>
        <context>CAAGAAATGG[A/T]GATGTAGAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCATTGATGATCTTACCAAAACCAAACAGAAAAGAGTTTACAAGAAATGG</left_flank>
        <right_flank>GATGTAGAGAATAGAATGAGAATCAGAAGCATCATATGTTTTGGAGATGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAGACCAAGTTTGTGCTCAGTACAGCGCTTCACTCAAATAGTATGCTAGTACAAACCATACTTGCAAAATTACGGGCCGGCCCGCGGGCCGGGTCGCGGGTCGGCCCTTGATAACTTTAAAAATTATATAACTGTTTTTTTCTTTTTTAATTCAAAAAAATGTCTTAAATTTTCGTTGGATTTTTTTTTACTGAGAAAGGGCCGGCGGGCCGGGCCGGCAAAATTGTCGCTTTGACCCGGCCCGGCCCGGCCCGTTGCAAGTATGGTACAAACTTGAGTCCGAGTGATTATGCGCCACCCGGTATTATACAGATAATCATATTAATCGAAGTTAAACTCCAAAACTTCTAAACTGAAAACCGAATCCATTTTCTTGAGGTTTTTTTTTAAATTTCTTTAGGACCAAGTATTCCTCCCTACTTTTTCAAACAACAGTATGTTTAAATATTCATTGATGATCTTACCAAAACCAAACAGAAAAGAGTTTACAAGAAATGGTGATGTAGAGAATAGAATGAGAATCAGAAGCATCATATGTTTTGGAGATGTTCCACGAAAATGAGAAATTGAAAAGAAACAAAACGGTTTAAGTATGGAAAAGTGGGGAGGTGGGGGATTAGTTGAACGTCTCGGATCCGGTGTTGTTTCGAATTACTTCTTCTTCTTCTTCTTATTCTCTTTTTGGGATAGTGGTTAGCCCTTCTCCAATTTACTCTTCATTCCGTAGTTTTCTACTTTTTTATTTCATTTCTTCATTTCGGGACATTAATCGTTTTGTGGATTCAGGGAGAGCGAGGGTTTCCTGCCTTTTTTTGGATTCGGAAAGCTGCTAAAGGAGGGACGGAGATGGATAGAGATCAGATGATGAGTGTAGATTTTTGAGGGATTCAGAAGAAGTGCAGATTCATACAGAGAACTCTTCATTCGCTTTCACTTCCGCTCGGATTATTTCATTTCGGACTAGATCGTACTCAATGTCGAACGATCTTTTGACCATTG</canonical>
            <polymorphic>GCAGACCAAGTTTGTGCTCAGTACAGCGCTTCACTCAAATAGTATGCTAGTACAAACCATACTTGCAAAATTACGGGCCGGCCCGCGGGCCGGGTCGCGGGTCGGCCCTTGATAACTTTAAAAATTATATAACTGTTTTTTTCTTTTTTAATTCAAAAAAATGTCTTAAATTTTCGTTGGATTTTTTTTTACTGAGAAAGGGCCGGCGGGCCGGGCCGGCAAAATTGTCGCTTTGACCCGGCCCGGCCCGGCCCGTTGCAAGTATGGTACAAACTTGAGTCCGAGTGATTATGCGCCACCCGGTATTATACAGATAATCATATTAATCGAAGTTAAACTCCAAAACTTCTAAACTGAAAACCGAATCCATTTTCTTGAGGTTTTTTTTTAAATTTCTTTAGGACCAAGTATTCCTCCCTACTTTTTCAAACAACAGTATGTTTAAATATTCATTGATGATCTTACCAAAACCAAACAGAAAAGAGTTTACAAGAAATGGWGATGTAGAGAATAGAATGAGAATCAGAAGCATCATATGTTTTGGAGATGTTCCACGAAAATGAGAAATTGAAAAGAAACAAAACGGTTTAAGTATGGAAAAGTGGGGAGGTGGGGGATTAGTTGAACGTCTCGGATCCGGTGTTGTTTCGAATTACTTCTTCTTCTTCTTCTTATTCTCTTTTTGGGATAGTGGTTAGCCCTTCTCCAATTTACTCTTCATTCCGTAGTTTTCTACTTTTTTATTTCATTTCTTCATTTCGGGACATTAATCGTTTTGTGGATTCAGGGAGAGCGAGGGTTTCCTGCCTTTTTTTGGATTCGGAAAGCTGCTAAAGGAGGGACGGAGATGGATAGAGATCAGATGATGAGTGTAGATTTTTGAGGGATTCAGAAGAAGTGCAGATTCATACAGAGAACTCTTCATTCGCTTTCACTTCCGCTCGGATTATTTCATTTCGGACTAGATCGTACTCAATGTCGAACGATCTTTTGACCATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>254 203 92 87 66 53 51 50 34 30 28 17 16 11 8</canonical_bands>
                <polymorphic_bands>256 254 92 87 66 51 50 34 30 28 17 16 11 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTCTAAACTGAAAACCGAATC</pcr_primer_p1>
		<pcr_primer_p2>ACTTAAACCGTTTTGTTTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTTCTAAACTGAAAACCGAATCCATTTTCTTGAGGTTTTTTTTTAAATTTCTTTAGGACCAAGTATTCCTCCCTACTTTTTCAAACAACAGTATGTTTAAATATTCATTGATGATCTTACCAAAACCAAACAGAAAAGAGTTTACAAGAAATGGTGATGTAGAGAATAGAATGAGAATCAGAAGCATCATATGTTTTGGAGATGTTCCACGAAAATGAGAAATTGAAAAGAAACAAAACGGTTTAAGT</canonical_amplicon>
		<polymorphic_amplicon>ACTTCTAAACTGAAAACCGAATCCATTTTCTTGAGGTTTTTTTTTAAATTTCTTTAGGACCAAGTATTCCTCCCTACTTTTTCAAACAACAGTATGTTTAAATATTCATTGATGATCTTACCAAAACCAAACAGAAAAGAGTTTACAAGAAATGGWGATGTAGAGAATAGAATGAGAATCAGAAGCATCATATGTTTTGGAGATGTTCCACGAAAATGAGAAATTGAAAAGAAACAAAACGGTTTAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3978</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>126212</contig_pos>
        <strand>+</strand>
        <context>AACCGAATCC[A/T]TTTTCTTGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATATTAATCGAAGTTAAACTCCAAAACTTCTAAACTGAAAACCGAATCC</left_flank>
        <right_flank>TTTTCTTGAGGTTTTTTTTTAAATTTCTTTAGGACCAAGTATTCCTCCCT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTGTCCAAAAATGTCTTTGTGCTTTTCATGAGATAAAGCAACTTTGATAAGCGATAACTCACAATCAGCTCAATGTTGGTCAAATTACATAAAACTTGGCACGTTTACTGATGGATTGTTTATGTTTTTGCAGACCAAGTTTGTGCTCAGTACAGCGCTTCACTCAAATAGTATGCTAGTACAAACCATACTTGCAAAATTACGGGCCGGCCCGCGGGCCGGGTCGCGGGTCGGCCCTTGATAACTTTAAAAATTATATAACTGTTTTTTTCTTTTTTAATTCAAAAAAATGTCTTAAATTTTCGTTGGATTTTTTTTTACTGAGAAAGGGCCGGCGGGCCGGGCCGGCAAAATTGTCGCTTTGACCCGGCCCGGCCCGGCCCGTTGCAAGTATGGTACAAACTTGAGTCCGAGTGATTATGCGCCACCCGGTATTATACAGATAATCATATTAATCGAAGTTAAACTCCAAAACTTCTAAACTGAAAACCGAATCCATTTTCTTGAGGTTTTTTTTTAAATTTCTTTAGGACCAAGTATTCCTCCCTACTTTTTCAAACAACAGTATGTTTAAATATTCATTGATGATCTTACCAAAACCAAACAGAAAAGAGTTTACAAGAAATGGTGATGTAGAGAATAGAATGAGAATCAGAAGCATCATATGTTTTGGAGATGTTCCACGAAAATGAGAAATTGAAAAGAAACAAAACGGTTTAAGTATGGAAAAGTGGGGAGGTGGGGGATTAGTTGAACGTCTCGGATCCGGTGTTGTTTCGAATTACTTCTTCTTCTTCTTCTTATTCTCTTTTTGGGATAGTGGTTAGCCCTTCTCCAATTTACTCTTCATTCCGTAGTTTTCTACTTTTTTATTTCATTTCTTCATTTCGGGACATTAATCGTTTTGTGGATTCAGGGAGAGCGAGGGTTTCCTGCCTTTTTTTGGATTCGGAAAGCTGCTAAAGGAGGGACGGAGATGGATAGAGATCAGATGATGA</canonical>
            <polymorphic>TACTGTCCAAAAATGTCTTTGTGCTTTTCATGAGATAAAGCAACTTTGATAAGCGATAACTCACAATCAGCTCAATGTTGGTCAAATTACATAAAACTTGGCACGTTTACTGATGGATTGTTTATGTTTTTGCAGACCAAGTTTGTGCTCAGTACAGCGCTTCACTCAAATAGTATGCTAGTACAAACCATACTTGCAAAATTACGGGCCGGCCCGCGGGCCGGGTCGCGGGTCGGCCCTTGATAACTTTAAAAATTATATAACTGTTTTTTTCTTTTTTAATTCAAAAAAATGTCTTAAATTTTCGTTGGATTTTTTTTTACTGAGAAAGGGCCGGCGGGCCGGGCCGGCAAAATTGTCGCTTTGACCCGGCCCGGCCCGGCCCGTTGCAAGTATGGTACAAACTTGAGTCCGAGTGATTATGCGCCACCCGGTATTATACAGATAATCATATTAATCGAAGTTAAACTCCAAAACTTCTAAACTGAAAACCGAATCCWTTTTCTTGAGGTTTTTTTTTAAATTTCTTTAGGACCAAGTATTCCTCCCTACTTTTTCAAACAACAGTATGTTTAAATATTCATTGATGATCTTACCAAAACCAAACAGAAAAGAGTTTACAAGAAATGGTGATGTAGAGAATAGAATGAGAATCAGAAGCATCATATGTTTTGGAGATGTTCCACGAAAATGAGAAATTGAAAAGAAACAAAACGGTTTAAGTATGGAAAAGTGGGGAGGTGGGGGATTAGTTGAACGTCTCGGATCCGGTGTTGTTTCGAATTACTTCTTCTTCTTCTTCTTATTCTCTTTTTGGGATAGTGGTTAGCCCTTCTCCAATTTACTCTTCATTCCGTAGTTTTCTACTTTTTTATTTCATTTCTTCATTTCGGGACATTAATCGTTTTGTGGATTCAGGGAGAGCGAGGGTTTCCTGCCTTTTTTTGGATTCGGAAAGCTGCTAAAGGAGGGACGGAGATGGATAGAGATCAGATGATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCGGTATTATACAGATAATCATA</pcr_primer_p1>
		<pcr_primer_p2>GTGGAACATCTCCAAAACATA</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>CCCGGTATTATACAGATAATCATATTAATCGAAGTTAAACTCCAAAACTTCTAAACTGAAAACCGAATCCATTTTCTTGAGGTTTTTTTTTAAATTTCTTTAGGACCAAGTATTCCTCCCTACTTTTTCAAACAACAGTATGTTTAAATATTCATTGATGATCTTACCAAAACCAAACAGAAAAGAGTTTACAAGAAATGGTGATGTAGAGAATAGAATGAGAATCAGAAGCATCATATGTTTTGGAGATGTTCCAC</canonical_amplicon>
		<polymorphic_amplicon>CCCGGTATTATACAGATAATCATATTAATCGAAGTTAAACTCCAAAACTTCTAAACTGAAAACCGAATCCWTTTTCTTGAGGTTTTTTTTTAAATTTCTTTAGGACCAAGTATTCCTCCCTACTTTTTCAAACAACAGTATGTTTAAATATTCATTGATGATCTTACCAAAACCAAACAGAAAAGAGTTTACAAGAAATGGTGATGTAGAGAATAGAATGAGAATCAGAAGCATCATATGTTTTGGAGATGTTCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3979</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>126118</contig_pos>
        <strand></strand>
        <context>tGGTACAAAC[T/A]TGAGTCCGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTGTCGCTTTGACCCGGCCCGGCCCGGCCCGTTGCAAGTATGGTACAAAC</left_flank>
        <right_flank>TGAGTCCGAGTGATTATGCGCCACCCGGTATTATACAGATAATCATATTA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAGAAGCACTAAAATTGGTAGAAATATAATGTTACGTTTGATTCAAAGCTACTGGAATTTTCAAAGCAATTCCTCAAGTCTAGGTGTTGCTATTACTGTCCAAAAATGTCTTTGTGCTTTTCATGAGATAAAGCAACTTTGATAAGCGATAACTCACAATCAGCTCAATGTTGGTCAAATTACATAAAACTTGGCACGTTTACTGATGGATTGTTTATGTTTTTGCAGACCAAGTTTGTGCTCAGTACAGCGCTTCACTCAAATAGTATGCTAGTACAAACCATACTTGCAAAATTACGGGCCGGCCCGCGGGCCGGGTCGCGGGTCGGCCCTTGATAACTTTAAAAATTATATAACTGTTTTTTTCTTTTTTAATTCAAAAAAATGTCTTAAATTTTCGTTGGATTTTTTTTTACTGAGAAAGGGCCGGCGGGCCGGGCCGGCAAAATTGTCGCTTTGACCCGGCCCGGCCCGGCCCGTTGCAAGTATGGTACAAACTTGAGTCCGAGTGATTATGCGCCACCCGGTATTATACAGATAATCATATTAATCGAAGTTAAACTCCAAAACTTCTAAACTGAAAACCGAATCCATTTTCTTGAGGTTTTTTTTTAAATTTCTTTAGGACCAAGTATTCCTCCCTACTTTTTCAAACAACAGTATGTTTAAATATTCATTGATGATCTTACCAAAACCAAACAGAAAAGAGTTTACAAGAAATGGTGATGTAGAGAATAGAATGAGAATCAGAAGCATCATATGTTTTGGAGATGTTCCACGAAAATGAGAAATTGAAAAGAAACAAAACGGTTTAAGTATGGAAAAGTGGGGAGGTGGGGGATTAGTTGAACGTCTCGGATCCGGTGTTGTTTCGAATTACTTCTTCTTCTTCTTCTTATTCTCTTTTTGGGATAGTGGTTAGCCCTTCTCCAATTTACTCTTCATTCCGTAGTTTTCTACTTTTTTATTTCATTTCTTCATTTCGGGACATTAATCGTT</canonical>
            <polymorphic>CAAGAAGCACTAAAATTGGTAGAAATATAATGTTACGTTTGATTCAAAGCTACTGGAATTTTCAAAGCAATTCCTCAAGTCTAGGTGTTGCTATTACTGTCCAAAAATGTCTTTGTGCTTTTCATGAGATAAAGCAACTTTGATAAGCGATAACTCACAATCAGCTCAATGTTGGTCAAATTACATAAAACTTGGCACGTTTACTGATGGATTGTTTATGTTTTTGCAGACCAAGTTTGTGCTCAGTACAGCGCTTCACTCAAATAGTATGCTAGTACAAACCATACTTGCAAAATTACGGGCCGGCCCGCGGGCCGGGTCGCGGGTCGGCCCTTGATAACTTTAAAAATTATATAACTGTTTTTTTCTTTTTTAATTCAAAAAAATGTCTTAAATTTTCGTTGGATTTTTTTTTACTGAGAAAGGGCCGGCGGGCCGGGCCGGCAAAATTGTCGCTTTGACCCGGCCCGGCCCGGCCCGTTGCAAGTATGGTACAAACWTGAGTCCGAGTGATTATGCGCCACCCGGTATTATACAGATAATCATATTAATCGAAGTTAAACTCCAAAACTTCTAAACTGAAAACCGAATCCATTTTCTTGAGGTTTTTTTTTAAATTTCTTTAGGACCAAGTATTCCTCCCTACTTTTTCAAACAACAGTATGTTTAAATATTCATTGATGATCTTACCAAAACCAAACAGAAAAGAGTTTACAAGAAATGGTGATGTAGAGAATAGAATGAGAATCAGAAGCATCATATGTTTTGGAGATGTTCCACGAAAATGAGAAATTGAAAAGAAACAAAACGGTTTAAGTATGGAAAAGTGGGGAGGTGGGGGATTAGTTGAACGTCTCGGATCCGGTGTTGTTTCGAATTACTTCTTCTTCTTCTTCTTATTCTCTTTTTGGGATAGTGGTTAGCCCTTCTCCAATTTACTCTTCATTCCGTAGTTTTCTACTTTTTTATTTCATTTCTTCATTTCGGGACATTAATCGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>425 401 100 74</canonical_bands>
                <polymorphic_bands>525 401 74</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTTGGGATCATTTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>TGGAGTTTAACTTCGATTAATATG</pcr_primer_p2>
		<pcr_amplicon_size>652</pcr_amplicon_size>
		<canonical_amplicon>CTTGAGTCCGAGTGATTATGCGCCACCCGGTATTATACAGATAATCATATTAATCGAAGTTAAACTCCA</canonical_amplicon>
		<polymorphic_amplicon>CWTGAGTCCGAGTGATTATGCGCCACCCGGTATTATACAGATAATCATATTAATCGAAGTTAAACTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb3980</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>141763</contig_pos>
        <strand>+</strand>
        <context>GTTATCAATT[A/G]ATAAATTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAGATACTTTTGCATCGAAAATTGCAGCCGAAAGTGTGAGTTATCAATT</left_flank>
        <right_flank>ATAAATTGAAAAATCACTGCGCCTACCATATGGGTCCGAAATTCATTAGA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATTGTTGAACTAATGAAAGTTGGAGCGGGAGAAGCAACAATTGGAACAAGAAGAAAAACTACAATCACTATTATTTCTGATGATAATGTCTTGAAAAATATCACTAATGTCCATAAGCTCATGGGACATTATATGAGACAGCTGAGACCTGGAAAAGCCACGTGGAAGGAACAAATTCTGAATGCAGTTTCTGTAAACGCTGGAGATCTTGCGAACGCTACAGTATCCGATTGTATACTTCATGCTCTTGCATTCCCATGGAAGTTTGCTTTTGCCTTCTTACCACCACCGACTATTTTCTACGGATATCCATGTTTTGTGGTGGCTCTCGTGGCTATTGGATTTGTAACTGCTGTTGTTGGAGATGTTGCATCGATTTTCGGATGTATGGTTGGATTGAAAGATGCGGTCACTGCGATCACTTTGGTTGCTCTTGGAACATCTCTTCCAGATACTTTTGCATCGAAAATTGCAGCCGAAAGTGTGAGTTATCAATTGATAAATTGAAAAATCACTGCGCCTACCATATGGGTCCGAAATTCATTAGAATCTTCTTATTTCACCGAAATTGAGTAATTTTGGCACATAATTTGGAGGGTGCGACAATTCGAGGGGGTACAACGAGGTGCAAAGAAATTTAGGGGTACAAAATCCACAATTCGAGAGTACAAAATTCGCCTTTTTAAGGTGTTTTGTACCCCCGAATTGAGGACTTCGTACCCCAATGACCCAAAAATGTGGGTATGATCCGAATCATTTGTCTTTTGTCGGATTAAAAAAATGACACCTGAAAATCTCGTAGACGGCGCTCGTGTCGATTTACGAGGGGGTGGAGCGAAAACGGATACTGTAGATAACAAATTTATTTATGTGAATTTAGTGTGATTTTCTGAACGAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAACTAAACTTAAACGCGAAAGTAGCTCGAACGAGCCAA</canonical>
            <polymorphic>TCATTGTTGAACTAATGAAAGTTGGAGCGGGAGAAGCAACAATTGGAACAAGAAGAAAAACTACAATCACTATTATTTCTGATGATAATGTCTTGAAAAATATCACTAATGTCCATAAGCTCATGGGACATTATATGAGACAGCTGAGACCTGGAAAAGCCACGTGGAAGGAACAAATTCTGAATGCAGTTTCTGTAAACGCTGGAGATCTTGCGAACGCTACAGTATCCGATTGTATACTTCATGCTCTTGCATTCCCATGGAAGTTTGCTTTTGCCTTCTTACCACCACCGACTATTTTCTACGGATATCCATGTTTTGTGGTGGCTCTCGTGGCTATTGGATTTGTAACTGCTGTTGTTGGAGATGTTGCATCGATTTTCGGATGTATGGTTGGATTGAAAGATGCGGTCACTGCGATCACTTTGGTTGCTCTTGGAACATCTCTTCCAGATACTTTTGCATCGAAAATTGCAGCCGAAAGTGTGAGTTATCAATTRATAAATTGAAAAATCACTGCGCCTACCATATGGGTCCGAAATTCATTAGAATCTTCTTATTTCACCGAAATTGAGTAATTTTGGCACATAATTTGGAGGGTGCGACAATTCGAGGGGGTACAACGAGGTGCAAAGAAATTTAGGGGTACAAAATCCACAATTCGAGAGTACAAAATTCGCCTTTTTAAGGTGTTTTGTACCCCCGAATTGAGGACTTCGTACCCCAATGACCCAAAAATGTGGGTATGATCCGAATCATTTGTCTTTTGTCGGATTAAAAAAATGACACCTGAAAATCTCGTAGACGGCGCTCGTGTCGATTTACGAGGGGGTGGAGCGAAAACGGATACTGTAGATAACAAATTTATTTATGTGAATTTAGTGTGATTTTCTGAACGAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAACTAAACTTAAACGCGAAAGTAGCTCGAACGAGCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>505 455 40</canonical_bands>
                <polymorphic_bands>960 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGCTATTGGATTTGTAACTG</pcr_primer_p1>
		<pcr_primer_p2>ATTACTCAATTTCGGTGAAATAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TGGCTATTGGATTTGTAACTGCTGTTGTTGGAGATGTTGCATCGATTTTCGGATGTATGGTTGGATTGAAAGATGCGGTCACTGCGATCACTTTGGTTGCTCTTGGAACATCTCTTCCAGATACTTTTGCATCGAAAATTGCAGCCGAAAGTGTGAGTTATCAATTGATAAATTGAAAAATCACTGCGCCTACCATATGGGTCCGAAATTCATTAGAATCTTCTTATTTCACCGAAATTGAGTAAT</canonical_amplicon>
		<polymorphic_amplicon>TGGCTATTGGATTTGTAACTGCTGTTGTTGGAGATGTTGCATCGATTTTCGGATGTATGGTTGGATTGAAAGATGCGGTCACTGCGATCACTTTGGTTGCTCTTGGAACATCTCTTCCAGATACTTTTGCATCGAAAATTGCAGCCGAAAGTGTGAGTTATCAATTRATAAATTGAAAAATCACTGCGCCTACCATATGGGTCCGAAATTCATTAGAATCTTCTTATTTCACCGAAATTGAGTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4011</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>262120</contig_pos>
        <strand>+</strand>
        <context>GATTCTGAGG[A/C]AAAGGCAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGCAGAATGGAAATGAAAAGGCAAATGGTTGTTGACACAAGATTCTGAGG</left_flank>
        <right_flank>AAAGGCAATTGAGAAGAAGTCAAAATTATTTTTGAAAAATAGACGAGCTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTGGAGAAGCCCCAGAAAAATCCTCATCCGTCGCTGCTCCAATGGAGCCAAAGATGGAAGAGCCAAAAATGGAAGAACCAAAGATCGAGGAGACCACAACTGAAGAGACTCTCTCCAAAGAGCCAGAAGCCGATGAGAAGCCAATTGAAGCCGCCACTGTTATCAGCTCAGCCGAAGAGACTCCATCCACTACTGAGGTTCCAATGACATCTTCCGAAGAGCCAGCAACATCTTCTGAGACTCCAGTCTCTTCTGCCACTTCTTTTGTTTCATCCCTCTTTGTTCTTGTCTGTGTCTACCTCATTGCCATGTAATCATTCCCGGGTTCTTGTGTTCTGATTTCTAGCCCTCGACCATTCACAAACTGTGTTTGTATACTTTTGGAATAAAATTGAATTTTTTACTGTAATGATTTATTGCAAAACGGCAAGCAAAGTGATTTTATTAAGCAGAATGGAAATGAAAAGGCAAATGGTTGTTGACACAAGATTCTGAGGAAAAGGCAATTGAGAAGAAGTCAAAATTATTTTTGAAAAATAGACGAGCTGACAACATACTGCTGGAAGTCTATTTTTGAGAAAACAATACACGCTGAATCAATGAGATTTTGACATATTAAAGGAAAGGCGGATGTTAAGTGGCAAATTGAAAAAAATTAAACGAATATCAAAAATTGCTTAAGTCTTCTTTGGCCGACGTCGTCTGAGATTTTTGTCCTTCTTATTCCTTTCGGCATGCTCCCGAATCTCAAAATCAATATCGATGCCTTCCTCCTCCTCTTCTTCCGCTTTTTTATCCGCGATTCTTGTCTCTTCCTCTTCTTCCGATGTGCTCTTCTGACGAAGAATCGCCTTCTTGGCCGGTTTCTTCTGGTCCACAACTTTCTTCCCTTTTTTCACTGGTTTCTCCTCCTCCTCTTCTTCAACTTCTGACAATTCAGATAGCTCTTCCTCTTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCCTCAGATGA</canonical>
            <polymorphic>ATCTGGAGAAGCCCCAGAAAAATCCTCATCCGTCGCTGCTCCAATGGAGCCAAAGATGGAAGAGCCAAAAATGGAAGAACCAAAGATCGAGGAGACCACAACTGAAGAGACTCTCTCCAAAGAGCCAGAAGCCGATGAGAAGCCAATTGAAGCCGCCACTGTTATCAGCTCAGCCGAAGAGACTCCATCCACTACTGAGGTTCCAATGACATCTTCCGAAGAGCCAGCAACATCTTCTGAGACTCCAGTCTCTTCTGCCACTTCTTTTGTTTCATCCCTCTTTGTTCTTGTCTGTGTCTACCTCATTGCCATGTAATCATTCCCGGGTTCTTGTGTTCTGATTTCTAGCCCTCGACCATTCACAAACTGTGTTTGTATACTTTTGGAATAAAATTGAATTTTTTACTGTAATGATTTATTGCAAAACGGCAAGCAAAGTGATTTTATTAAGCAGAATGGAAATGAAAAGGCAAATGGTTGTTGACACAAGATTCTGAGGMAAAGGCAATTGAGAAGAAGTCAAAATTATTTTTGAAAAATAGACGAGCTGACAACATACTGCTGGAAGTCTATTTTTGAGAAAACAATACACGCTGAATCAATGAGATTTTGACATATTAAAGGAAAGGCGGATGTTAAGTGGCAAATTGAAAAAAATTAAACGAATATCAAAAATTGCTTAAGTCTTCTTTGGCCGACGTCGTCTGAGATTTTTGTCCTTCTTATTCCTTTCGGCATGCTCCCGAATCTCAAAATCAATATCGATGCCTTCCTCCTCCTCTTCTTCCGCTTTTTTATCCGCGATTCTTGTCTCTTCCTCTTCTTCCGATGTGCTCTTCTGACGAAGAATCGCCTTCTTGGCCGGTTTCTTCTGGTCCACAACTTTCTTCCCTTTTTTCACTGGTTTCTCCTCCTCCTCTTCTTCAACTTCTGACAATTCAGATAGCTCTTCCTCTTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCCTCAGATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTATTAAGCAGAATGGAAATG</pcr_primer_p1>
		<pcr_primer_p2>AAGAAGACTTAAGCAATTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTATTAAGCAGAATGGAAATGAAAAGGCAAATGGTTGTTGACACAAGATTCTGAGGAAAAGGCAATTGAGAAGAAGTCAAAATTATTTTTGAAAAATAGACGAGCTGACAACATACTGCTGGAAGTCTATTTTTGAGAAAACAATACACGCTGAATCAATGAGATTTTGACATATTAAAGGAAAGGCGGATGTTAAGTGGCAAATTGAAAAAAATTAAACGAATATCAAAAATTGCTTAAGTCTTCTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTATTAAGCAGAATGGAAATGAAAAGGCAAATGGTTGTTGACACAAGATTCTGAGGMAAAGGCAATTGAGAAGAAGTCAAAATTATTTTTGAAAAATAGACGAGCTGACAACATACTGCTGGAAGTCTATTTTTGAGAAAACAATACACGCTGAATCAATGAGATTTTGACATATTAAAGGAAAGGCGGATGTTAAGTGGCAAATTGAAAAAAATTAAACGAATATCAAAAATTGCTTAAGTCTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4012</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>262287</contig_pos>
        <strand>+</strand>
        <context>ATTAAACGAA[A/T]ATCAAAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTAAAGGAAAGGCGGATGTTAAGTGGCAAATTGAAAAAAATTAAACGAA</left_flank>
        <right_flank>ATCAAAAATTGCTTAAGTCTTCTTTGGCCGACGTCGTCTGAGATTTTTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCAGCCGAAGAGACTCCATCCACTACTGAGGTTCCAATGACATCTTCCGAAGAGCCAGCAACATCTTCTGAGACTCCAGTCTCTTCTGCCACTTCTTTTGTTTCATCCCTCTTTGTTCTTGTCTGTGTCTACCTCATTGCCATGTAATCATTCCCGGGTTCTTGTGTTCTGATTTCTAGCCCTCGACCATTCACAAACTGTGTTTGTATACTTTTGGAATAAAATTGAATTTTTTACTGTAATGATTTATTGCAAAACGGCAAGCAAAGTGATTTTATTAAGCAGAATGGAAATGAAAAGGCAAATGGTTGTTGACACAAGATTCTGAGGAAAAGGCAATTGAGAAGAAGTCAAAATTATTTTTGAAAAATAGACGAGCTGACAACATACTGCTGGAAGTCTATTTTTGAGAAAACAATACACGCTGAATCAATGAGATTTTGACATATTAAAGGAAAGGCGGATGTTAAGTGGCAAATTGAAAAAAATTAAACGAATATCAAAAATTGCTTAAGTCTTCTTTGGCCGACGTCGTCTGAGATTTTTGTCCTTCTTATTCCTTTCGGCATGCTCCCGAATCTCAAAATCAATATCGATGCCTTCCTCCTCCTCTTCTTCCGCTTTTTTATCCGCGATTCTTGTCTCTTCCTCTTCTTCCGATGTGCTCTTCTGACGAAGAATCGCCTTCTTGGCCGGTTTCTTCTGGTCCACAACTTTCTTCCCTTTTTTCACTGGTTTCTCCTCCTCCTCTTCTTCAACTTCTGACAATTCAGATAGCTCTTCCTCTTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCCTCAGATGACGAATCCTTTCGCTTCAGTTTCTTCATCTTCTCCTTATCGTATGCTTTTGAAAGTGACTGGAACTCTTTGAGAGCAACTTCGAGGTCCTTAATATACTGTTCATTGGTTTCGGTAAGTCCGACGGCTTCTTTGGCTGACTTGTCTTCTTCTAACTCGAGAGCCAACT</canonical>
            <polymorphic>GCTCAGCCGAAGAGACTCCATCCACTACTGAGGTTCCAATGACATCTTCCGAAGAGCCAGCAACATCTTCTGAGACTCCAGTCTCTTCTGCCACTTCTTTTGTTTCATCCCTCTTTGTTCTTGTCTGTGTCTACCTCATTGCCATGTAATCATTCCCGGGTTCTTGTGTTCTGATTTCTAGCCCTCGACCATTCACAAACTGTGTTTGTATACTTTTGGAATAAAATTGAATTTTTTACTGTAATGATTTATTGCAAAACGGCAAGCAAAGTGATTTTATTAAGCAGAATGGAAATGAAAAGGCAAATGGTTGTTGACACAAGATTCTGAGGAAAAGGCAATTGAGAAGAAGTCAAAATTATTTTTGAAAAATAGACGAGCTGACAACATACTGCTGGAAGTCTATTTTTGAGAAAACAATACACGCTGAATCAATGAGATTTTGACATATTAAAGGAAAGGCGGATGTTAAGTGGCAAATTGAAAAAAATTAAACGAAWATCAAAAATTGCTTAAGTCTTCTTTGGCCGACGTCGTCTGAGATTTTTGTCCTTCTTATTCCTTTCGGCATGCTCCCGAATCTCAAAATCAATATCGATGCCTTCCTCCTCCTCTTCTTCCGCTTTTTTATCCGCGATTCTTGTCTCTTCCTCTTCTTCCGATGTGCTCTTCTGACGAAGAATCGCCTTCTTGGCCGGTTTCTTCTGGTCCACAACTTTCTTCCCTTTTTTCACTGGTTTCTCCTCCTCCTCTTCTTCAACTTCTGACAATTCAGATAGCTCTTCCTCTTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCCTCAGATGACGAATCCTTTCGCTTCAGTTTCTTCATCTTCTCCTTATCGTATGCTTTTGAAAGTGACTGGAACTCTTTGAGAGCAACTTCGAGGTCCTTAATATACTGTTCATTGGTTTCGGTAAGTCCGACGGCTTCTTTGGCTGACTTGTCTTCTTCTAACTCGAGAGCCAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAACAATACACGCTGAATC</pcr_primer_p1>
		<pcr_primer_p2>GAAGAAGAGGAAGAGACAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGAAAACAATACACGCTGAATCAATGAGATTTTGACATATTAAAGGAAAGGCGGATGTTAAGTGGCAAATTGAAAAAAATTAAACGAATATCAAAAATTGCTTAAGTCTTCTTTGGCCGACGTCGTCTGAGATTTTTGTCCTTCTTATTCCTTTCGGCATGCTCCCGAATCTCAAAATCAATATCGATGCCTTCCTCCTCCTCTTCTTCCGCTTTTTTATCCGCGATTCTTGTCTCTTCCTCTTCTTC</canonical_amplicon>
		<polymorphic_amplicon>AGAAAACAATACACGCTGAATCAATGAGATTTTGACATATTAAAGGAAAGGCGGATGTTAAGTGGCAAATTGAAAAAAATTAAACGAAWATCAAAAATTGCTTAAGTCTTCTTTGGCCGACGTCGTCTGAGATTTTTGTCCTTCTTATTCCTTTCGGCATGCTCCCGAATCTCAAAATCAATATCGATGCCTTCCTCCTCCTCTTCTTCCGCTTTTTTATCCGCGATTCTTGTCTCTTCCTCTTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4013</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>263720</contig_pos>
        <strand></strand>
        <context>TTGATGAATT[C/A]TTTACCAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GGTAGACCAAAACAGTATTTTAATTTAAAAAAAAGTTTATTTGATGAATT</left_flank>
        <right_flank>TTTACCAAATTTAAATTGAATTTCGAGAATACAGAGTGACTTTTTGTCGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTTCTGCTTGTGCCTGAGCCATCCGCATCGCTGGATGAACGTCTGGGCGGGACGGATAACCACCCGGATGACGTTGACCGCCTCCTCCGCCCATTGCCGGATGAATTGGAGGTCGTTGCTGGTTTATCGATGGTGCTGGTTGAGATGAACGACCGAGGAAACCCATGAGCATCGGATGGAATAGTGTCGGATAGAGCATTGCAAAGCAAACGACAATCACACCGACCACAAGGCCTAGCTTCCATCCTGAAAAGGGTTAATTTTATGATGCGTGACTCTCTAATGAGTTTTATTGGCCCTTTTATCTTAGACACTTTGATTCAGTAAGCCGTAGGGTCTTTTTCTATTAATCGGCTTAAATTGGGATGATTTATTTTGCCGTGGTTAGATTTTTTGAAGAATTAAATGGCTGGAAAATGTGGCTGAAGCTTCAAACGAAAAGCGCCCGGTAGACCAAAACAGTATTTTAATTTAAAAAAAAGTTTATTTGATGAATTCTTTACCAAATTTAAATTGAATTTCGAGAATACAGAGTGACTTTTTGTCGTAAAACTTATCTAACTACCGTATTTGCTCTAATAAAAACCAATGCTTTACTTGCACTTTGAGGTCAATTATCTCAATTTCTATAAGAGATAACAAAAAGCGATTAACTAACAAAATATTTTTGAAAGTATGGAAAGAATTTTGTTAGTTGGTCACTTTATGATATTTTTAACAGAAACTGAGAAAATTGGCTCAAAGTTAAAAGTTTTGCGGCTTTCTACTGCAAGATTAACGGTAGTCTGATACAGTATACGAGAAGTGGAATACCATTTCCCAGTGTCTGAAATAAGATTTCTGAAAATCTAAAACCGTTTACATGTTTCTAGCACTTCAGAATATATTTTCAAACACATTCTCCAGGCCCTTGTGTTTCCATATATACGTTTTCAGGTATAATTTTCCAAAATTCTCAGTATGTATTTTGTGTAAAATATTATCAAGGCTCACAGACT</canonical>
            <polymorphic>TCCTTCTGCTTGTGCCTGAGCCATCCGCATCGCTGGATGAACGTCTGGGCGGGACGGATAACCACCCGGATGACGTTGACCGCCTCCTCCGCCCATTGCCGGATGAATTGGAGGTCGTTGCTGGTTTATCGATGGTGCTGGTTGAGATGAACGACCGAGGAAACCCATGAGCATCGGATGGAATAGTGTCGGATAGAGCATTGCAAAGCAAACGACAATCACACCGACCACAAGGCCTAGCTTCCATCCTGAAAAGGGTTAATTTTATGATGCGTGACTCTCTAATGAGTTTTATTGGCCCTTTTATCTTAGACACTTTGATTCAGTAAGCCGTAGGGTCTTTTTCTATTAATCGGCTTAAATTGGGATGATTTATTTTGCCGTGGTTAGATTTTTTGAAGAATTAAATGGCTGGAAAATGTGGCTGAAGCTTCAAACGAAAAGCGCCCGGTAGACCAAAACAGTATTTTAATTTAAAAAAAAGTTTATTTGATGAATTMTTTACCAAATTTAAATTGAATTTCGAGAATACAGAGTGACTTTTTGTCGTAAAACTTATCTAACTACCGTATTTGCTCTAATAAAAACCAATGCTTTACTTGCACTTTGAGGTCAATTATCTCAATTTCTATAAGAGATAACAAAAAGCGATTAACTAACAAAATATTTTTGAAAGTATGGAAAGAATTTTGTTAGTTGGTCACTTTATGATATTTTTAACAGAAACTGAGAAAATTGGCTCAAAGTTAAAAGTTTTGCGGCTTTCTACTGCAAGATTAACGGTAGTCTGATACAGTATACGAGAAGTGGAATACCATTTCCCAGTGTCTGAAATAAGATTTCTGAAAATCTAAAACCGTTTACATGTTTCTAGCACTTCAGAATATATTTTCAAACACATTCTCCAGGCCCTTGTGTTTCCATATATACGTTTTCAGGTATAATTTTCCAAAATTCTCAGTATGTATTTTGTGTAAAATATTATCAAGGCTCACAGACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>495 267 167 48 12 11</canonical_bands>
                <polymorphic_bands>507 267 167 48 11</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTAGACACTTTGATTCAGTAAGC</pcr_primer_p1>
		<pcr_primer_p2>AGTTTTACGACAAAAAGTCACTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTAGACACTTTGATTCAGTAAGCCGTAGGGTCTTTTTCTATTAATCGGCTTAAATTGGGATGATTTATTTTGCCGTGGTTAGATTTTTTGAAGAATTAAATGGCTGGAAAATGTGGCTGAAGCTTCAAACGAAAAGCGCCCGGTAGACCAAAACAGTATTTTAATTTAAAAAAAAGTTTATTTGATGAATTCTTTACCAAATTTAAATTGAATTTCGAGAATACAGAGTGACTTTTTGTCGTAAAACT</canonical_amplicon>
		<polymorphic_amplicon>CTTAGACACTTTGATTCAGTAAGCCGTAGGGTCTTTTTCTATTAATCGGCTTAAATTGGGATGATTTATTTTGCCGTGGTTAGATTTTTTGAAGAATTAAATGGCTGGAAAATGTGGCTGAAGCTTCAAACGAAAAGCGCCCGGTAGACCAAAACAGTATTTTAATTTAAAAAAAAGTTTATTTGATGAATTMTTTACCAAATTTAAATTGAATTTCGAGAATACAGAGTGACTTTTTGTCGTAAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4014</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>263593</contig_pos>
        <strand>+</strand>
        <context>TTGGGATGAT[C/T]TATTTTGCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGTAAGCCGTAGGGTCTTTTTCTATTAATCGGCTTAAATTGGGATGAT</left_flank>
        <right_flank>TATTTTGCCGTGGTTAGATTTTTTGAAGAATTAAATGGCTGGAAAATGTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTCCTCTTCTTCCTCTTTGCCTTTTTTCCTTTTGATTTGAATAAAGTATACAATAGGAATAAGACAACTCCAATAGTATAAATCGGTAGCATCCAAGTGAACATGCCTTTCGATCCTCCGGACTGTCCTTCTGCTTGTGCCTGAGCCATCCGCATCGCTGGATGAACGTCTGGGCGGGACGGATAACCACCCGGATGACGTTGACCGCCTCCTCCGCCCATTGCCGGATGAATTGGAGGTCGTTGCTGGTTTATCGATGGTGCTGGTTGAGATGAACGACCGAGGAAACCCATGAGCATCGGATGGAATAGTGTCGGATAGAGCATTGCAAAGCAAACGACAATCACACCGACCACAAGGCCTAGCTTCCATCCTGAAAAGGGTTAATTTTATGATGCGTGACTCTCTAATGAGTTTTATTGGCCCTTTTATCTTAGACACTTTGATTCAGTAAGCCGTAGGGTCTTTTTCTATTAATCGGCTTAAATTGGGATGATTTATTTTGCCGTGGTTAGATTTTTTGAAGAATTAAATGGCTGGAAAATGTGGCTGAAGCTTCAAACGAAAAGCGCCCGGTAGACCAAAACAGTATTTTAATTTAAAAAAAAGTTTATTTGATGAATTCTTTACCAAATTTAAATTGAATTTCGAGAATACAGAGTGACTTTTTGTCGTAAAACTTATCTAACTACCGTATTTGCTCTAATAAAAACCAATGCTTTACTTGCACTTTGAGGTCAATTATCTCAATTTCTATAAGAGATAACAAAAAGCGATTAACTAACAAAATATTTTTGAAAGTATGGAAAGAATTTTGTTAGTTGGTCACTTTATGATATTTTTAACAGAAACTGAGAAAATTGGCTCAAAGTTAAAAGTTTTGCGGCTTTCTACTGCAAGATTAACGGTAGTCTGATACAGTATACGAGAAGTGGAATACCATTTCCCAGTGTCTGAAATAAGATTTCTGAAAATCTAAAACCGTTTACATGTTTCTA</canonical>
            <polymorphic>AGTTCCTCTTCTTCCTCTTTGCCTTTTTTCCTTTTGATTTGAATAAAGTATACAATAGGAATAAGACAACTCCAATAGTATAAATCGGTAGCATCCAAGTGAACATGCCTTTCGATCCTCCGGACTGTCCTTCTGCTTGTGCCTGAGCCATCCGCATCGCTGGATGAACGTCTGGGCGGGACGGATAACCACCCGGATGACGTTGACCGCCTCCTCCGCCCATTGCCGGATGAATTGGAGGTCGTTGCTGGTTTATCGATGGTGCTGGTTGAGATGAACGACCGAGGAAACCCATGAGCATCGGATGGAATAGTGTCGGATAGAGCATTGCAAAGCAAACGACAATCACACCGACCACAAGGCCTAGCTTCCATCCTGAAAAGGGTTAATTTTATGATGCGTGACTCTCTAATGAGTTTTATTGGCCCTTTTATCTTAGACACTTTGATTCAGTAAGCCGTAGGGTCTTTTTCTATTAATCGGCTTAAATTGGGATGATYTATTTTGCCGTGGTTAGATTTTTTGAAGAATTAAATGGCTGGAAAATGTGGCTGAAGCTTCAAACGAAAAGCGCCCGGTAGACCAAAACAGTATTTTAATTTAAAAAAAAGTTTATTTGATGAATTCTTTACCAAATTTAAATTGAATTTCGAGAATACAGAGTGACTTTTTGTCGTAAAACTTATCTAACTACCGTATTTGCTCTAATAAAAACCAATGCTTTACTTGCACTTTGAGGTCAATTATCTCAATTTCTATAAGAGATAACAAAAAGCGATTAACTAACAAAATATTTTTGAAAGTATGGAAAGAATTTTGTTAGTTGGTCACTTTATGATATTTTTAACAGAAACTGAGAAAATTGGCTCAAAGTTAAAAGTTTTGCGGCTTTCTACTGCAAGATTAACGGTAGTCTGATACAGTATACGAGAAGTGGAATACCATTTCCCAGTGTCTGAAATAAGATTTCTGAAAATCTAAAACCGTTTACATGTTTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCTTTTATCTTAGACACTTTGA</pcr_primer_p1>
		<pcr_primer_p2>CGACAAAAAGTCACTCTGTATTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCCTTTTATCTTAGACACTTTGATTCAGTAAGCCGTAGGGTCTTTTTCTATTAATCGGCTTAAATTGGGATGATTTATTTTGCCGTGGTTAGATTTTTTGAAGAATTAAATGGCTGGAAAATGTGGCTGAAGCTTCAAACGAAAAGCGCCCGGTAGACCAAAACAGTATTTTAATTTAAAAAAAAGTTTATTTGATGAATTCTTTACCAAATTTAAATTGAATTTCGAGAATACAGAGTGACTTTTTGTCG</canonical_amplicon>
		<polymorphic_amplicon>CCCTTTTATCTTAGACACTTTGATTCAGTAAGCCGTAGGGTCTTTTTCTATTAATCGGCTTAAATTGGGATGATYTATTTTGCCGTGGTTAGATTTTTTGAAGAATTAAATGGCTGGAAAATGTGGCTGAAGCTTCAAACGAAAAGCGCCCGGTAGACCAAAACAGTATTTTAATTTAAAAAAAAGTTTATTTGATGAATTCTTTACCAAATTTAAATTGAATTTCGAGAATACAGAGTGACTTTTTGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4015</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>263571</contig_pos>
        <strand>+</strand>
        <context>TTTTTCTATT[A/C]ATCGGCTTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTTTATCTTAGACACTTTGATTCAGTAAGCCGTAGGGTCTTTTTCTATT</left_flank>
        <right_flank>ATCGGCTTAAATTGGGATGATTTATTTTGCCGTGGTTAGATTTTTTGAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATCATCTTCAGAATCGAAATAGTTCCTCTTCTTCCTCTTTGCCTTTTTTCCTTTTGATTTGAATAAAGTATACAATAGGAATAAGACAACTCCAATAGTATAAATCGGTAGCATCCAAGTGAACATGCCTTTCGATCCTCCGGACTGTCCTTCTGCTTGTGCCTGAGCCATCCGCATCGCTGGATGAACGTCTGGGCGGGACGGATAACCACCCGGATGACGTTGACCGCCTCCTCCGCCCATTGCCGGATGAATTGGAGGTCGTTGCTGGTTTATCGATGGTGCTGGTTGAGATGAACGACCGAGGAAACCCATGAGCATCGGATGGAATAGTGTCGGATAGAGCATTGCAAAGCAAACGACAATCACACCGACCACAAGGCCTAGCTTCCATCCTGAAAAGGGTTAATTTTATGATGCGTGACTCTCTAATGAGTTTTATTGGCCCTTTTATCTTAGACACTTTGATTCAGTAAGCCGTAGGGTCTTTTTCTATTAATCGGCTTAAATTGGGATGATTTATTTTGCCGTGGTTAGATTTTTTGAAGAATTAAATGGCTGGAAAATGTGGCTGAAGCTTCAAACGAAAAGCGCCCGGTAGACCAAAACAGTATTTTAATTTAAAAAAAAGTTTATTTGATGAATTCTTTACCAAATTTAAATTGAATTTCGAGAATACAGAGTGACTTTTTGTCGTAAAACTTATCTAACTACCGTATTTGCTCTAATAAAAACCAATGCTTTACTTGCACTTTGAGGTCAATTATCTCAATTTCTATAAGAGATAACAAAAAGCGATTAACTAACAAAATATTTTTGAAAGTATGGAAAGAATTTTGTTAGTTGGTCACTTTATGATATTTTTAACAGAAACTGAGAAAATTGGCTCAAAGTTAAAAGTTTTGCGGCTTTCTACTGCAAGATTAACGGTAGTCTGATACAGTATACGAGAAGTGGAATACCATTTCCCAGTGTCTGAAATAAGATTTCTGAAAATC</canonical>
            <polymorphic>GAATCATCTTCAGAATCGAAATAGTTCCTCTTCTTCCTCTTTGCCTTTTTTCCTTTTGATTTGAATAAAGTATACAATAGGAATAAGACAACTCCAATAGTATAAATCGGTAGCATCCAAGTGAACATGCCTTTCGATCCTCCGGACTGTCCTTCTGCTTGTGCCTGAGCCATCCGCATCGCTGGATGAACGTCTGGGCGGGACGGATAACCACCCGGATGACGTTGACCGCCTCCTCCGCCCATTGCCGGATGAATTGGAGGTCGTTGCTGGTTTATCGATGGTGCTGGTTGAGATGAACGACCGAGGAAACCCATGAGCATCGGATGGAATAGTGTCGGATAGAGCATTGCAAAGCAAACGACAATCACACCGACCACAAGGCCTAGCTTCCATCCTGAAAAGGGTTAATTTTATGATGCGTGACTCTCTAATGAGTTTTATTGGCCCTTTTATCTTAGACACTTTGATTCAGTAAGCCGTAGGGTCTTTTTCTATTMATCGGCTTAAATTGGGATGATTTATTTTGCCGTGGTTAGATTTTTTGAAGAATTAAATGGCTGGAAAATGTGGCTGAAGCTTCAAACGAAAAGCGCCCGGTAGACCAAAACAGTATTTTAATTTAAAAAAAAGTTTATTTGATGAATTCTTTACCAAATTTAAATTGAATTTCGAGAATACAGAGTGACTTTTTGTCGTAAAACTTATCTAACTACCGTATTTGCTCTAATAAAAACCAATGCTTTACTTGCACTTTGAGGTCAATTATCTCAATTTCTATAAGAGATAACAAAAAGCGATTAACTAACAAAATATTTTTGAAAGTATGGAAAGAATTTTGTTAGTTGGTCACTTTATGATATTTTTAACAGAAACTGAGAAAATTGGCTCAAAGTTAAAAGTTTTGCGGCTTTCTACTGCAAGATTAACGGTAGTCTGATACAGTATACGAGAAGTGGAATACCATTTCCCAGTGTCTGAAATAAGATTTCTGAAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>408 141 90 74 65 65 46 37 30 30 9 5</canonical_bands>
                <polymorphic_bands>408 141 99 74 65 65 46 37 30 30 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCTTTTATCTTAGACACTTTGA</pcr_primer_p1>
		<pcr_primer_p2>CGACAAAAAGTCACTCTGTATTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCCTTTTATCTTAGACACTTTGATTCAGTAAGCCGTAGGGTCTTTTTCTATTAATCGGCTTAAATTGGGATGATTTATTTTGCCGTGGTTAGATTTTTTGAAGAATTAAATGGCTGGAAAATGTGGCTGAAGCTTCAAACGAAAAGCGCCCGGTAGACCAAAACAGTATTTTAATTTAAAAAAAAGTTTATTTGATGAATTCTTTACCAAATTTAAATTGAATTTCGAGAATACAGAGTGACTTTTTGTCG</canonical_amplicon>
		<polymorphic_amplicon>CCCTTTTATCTTAGACACTTTGATTCAGTAAGCCGTAGGGTCTTTTTCTATTMATCGGCTTAAATTGGGATGATTTATTTTGCCGTGGTTAGATTTTTTGAAGAATTAAATGGCTGGAAAATGTGGCTGAAGCTTCAAACGAAAAGCGCCCGGTAGACCAAAACAGTATTTTAATTTAAAAAAAAGTTTATTTGATGAATTCTTTACCAAATTTAAATTGAATTTCGAGAATACAGAGTGACTTTTTGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4025</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>308950</contig_pos>
        <strand></strand>
        <context>AACTTTGAAA[A/G]ACTTCTTGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCAAGCAACGTTTAATTTACTAATATAACGATTTCTTGAACTTTGAAA</left_flank>
        <right_flank>ACTTCTTGTATCTGAATTAATATACCGTAACATCTATAATAGAAGGGCCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAATTATAATTATTAGAGGAAGTTTAAGGTTGATTTTCTGGAGAATCGAATTATCTCGAGTTCAGGGATCATCAATCCAGAGGGGTGGCGATGTTCCGGAGATCAGGGTAACCTCATTCTCAATTGAACAGAATTATTGGCTTGTAAAGTTTAGAACCGCCATGAGGATCGGAGGTTGATCTCCGATTTTCCAAAATATCTATAGAAAAAGAACCCCTTTTTTAAAAGAATTGGCCCAAGAAATTTGTACCACTGATTCTTGAATCTAGAATTTCCCTAAAACGAGTTCGAAAACAGCACCATATCATCCCACTAATTTCGTCACACTTCCTCTGATTCACTTCCGAACCGTCGCATTAAATTAGATTTCATGAGCTGCAACTAAATGGATTCTAATCTCATCATGTACATCTTAGAACTTTACTTTTCCGGTCTAAAGATATTTTAAATTCAAGCAACGTTTAATTTACTAATATAACGATTTCTTGAACTTTGAAAAACTTCTTGTATCTGAATTAATATACCGTAACATCTATAATAGAAGGGCCTAAACTTTGAGTCAATCTATCTCGCTTCCTGTCAAAGGTATAAAAATTTTGTCAACGGGTAATTTTTTTTATCATAAGATAAACAATATTTTATCAGTCGACAAAATTTTAATATCTTTCACAGAAATCGAGATAGTGGAGCTAAAAATTGACGGTTTGTGTGGCACTCTATCAGAGCGTTTACGGTAGTTCAGCTATCATTAAAAAACCGAACTAGTCAGATCCAATTAGGACAAGTATTCGATATCACAAAAGTTATAATTAAACAAGTCCTAATCATCAAAAATTATCAATCAAAATTATTAAGTAATCCTCTTTGTCAAGTTATGTTACAATGATCCTCCAATCCTTATCAAAACCAGTGAGGAACGTCCTTATTCTCCACCAACTATTTCCTCGAGAATCAAACATCCCGATGACATAATCCACTCATCCTATAACATTTTCTTCT</canonical>
            <polymorphic>TCAATTATAATTATTAGAGGAAGTTTAAGGTTGATTTTCTGGAGAATCGAATTATCTCGAGTTCAGGGATCATCAATCCAGAGGGGTGGCGATGTTCCGGAGATCAGGGTAACCTCATTCTCAATTGAACAGAATTATTGGCTTGTAAAGTTTAGAACCGCCATGAGGATCGGAGGTTGATCTCCGATTTTCCAAAATATCTATAGAAAAAGAACCCCTTTTTTAAAAGAATTGGCCCAAGAAATTTGTACCACTGATTCTTGAATCTAGAATTTCCCTAAAACGAGTTCGAAAACAGCACCATATCATCCCACTAATTTCGTCACACTTCCTCTGATTCACTTCCGAACCGTCGCATTAAATTAGATTTCATGAGCTGCAACTAAATGGATTCTAATCTCATCATGTACATCTTAGAACTTTACTTTTCCGGTCTAAAGATATTTTAAATTCAAGCAACGTTTAATTTACTAATATAACGATTTCTTGAACTTTGAAARACTTCTTGTATCTGAATTAATATACCGTAACATCTATAATAGAAGGGCCTAAACTTTGAGTCAATCTATCTCGCTTCCTGTCAAAGGTATAAAAATTTTGTCAACGGGTAATTTTTTTTATCATAAGATAAACAATATTTTATCAGTCGACAAAATTTTAATATCTTTCACAGAAATCGAGATAGTGGAGCTAAAAATTGACGGTTTGTGTGGCACTCTATCAGAGCGTTTACGGTAGTTCAGCTATCATTAAAAAACCGAACTAGTCAGATCCAATTAGGACAAGTATTCGATATCACAAAAGTTATAATTAAACAAGTCCTAATCATCAAAAATTATCAATCAAAATTATTAAGTAATCCTCTTTGTCAAGTTATGTTACAATGATCCTCCAATCCTTATCAAAACCAGTGAGGAACGTCCTTATTCTCCACCAACTATTTCCTCGAGAATCAAACATCCCGATGACATAATCCACTCATCCTATAACATTTTCTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAAATTCAAGCAACGTTTAAT</pcr_primer_p1>
		<pcr_primer_p2>GGATCTGACTAGTTCGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>TTTAAATTCAAGCAACGTTTAATTTACTAATATAACGATTTCTTGAACTTTGAAAAACTTCTTGTATCTGAATTAATATACCGTAACATCTATAATAGAAGGGCCTAAACTTTGAGTCAATCTATCTCGCTTCCTGTCAAAGGTATAAAAATTTTGTCAACGGGTAATTTTTTTTATCATAAGATAAACAATATTTTATCAGTCGACAAAATTTTAATATCTTTCACAGAAATCGAGATAGTGGAGCTAAAAATTGACGGTTTGTGTGGCACTCTATCAGAGCGTTTACGGTAGTTCAGCTATCATTAAAAAACCGAACTAGTCAGATCC</canonical_amplicon>
		<polymorphic_amplicon>TTTAAATTCAAGCAACGTTTAATTTACTAATATAACGATTTCTTGAACTTTGAAARACTTCTTGTATCTGAATTAATATACCGTAACATCTATAATAGAAGGGCCTAAACTTTGAGTCAATCTATCTCGCTTCCTGTCAAAGGTATAAAAATTTTGTCAACGGGTAATTTTTTTTATCATAAGATAAACAATATTTTATCAGTCGACAAAATTTTAATATCTTTCACAGAAATCGAGATAGTGGAGCTAAAAATTGACGGTTTGTGTGGCACTCTATCAGAGCGTTTACGGTAGTTCAGCTATCATTAAAAAACCGAACTAGTCAGATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4026</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>309377</contig_pos>
        <strand></strand>
        <context>AACGTCCTTA[T/A]TCTCCACCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGTTACAATGATCCTCCAATCCTTATCAAAACCAGTGAGGAACGTCCTTA</left_flank>
        <right_flank>TCTCCACCAACTATTTCCTCGAGAATCAAACATCCCGATGACATAATCCA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCGGTCTAAAGATATTTTAAATTCAAGCAACGTTTAATTTACTAATATAACGATTTCTTGAACTTTGAAAAACTTCTTGTATCTGAATTAATATACCGTAACATCTATAATAGAAGGGCCTAAACTTTGAGTCAATCTATCTCGCTTCCTGTCAAAGGTATAAAAATTTTGTCAACGGGTAATTTTTTTTATCATAAGATAAACAATATTTTATCAGTCGACAAAATTTTAATATCTTTCACAGAAATCGAGATAGTGGAGCTAAAAATTGACGGTTTGTGTGGCACTCTATCAGAGCGTTTACGGTAGTTCAGCTATCATTAAAAAACCGAACTAGTCAGATCCAATTAGGACAAGTATTCGATATCACAAAAGTTATAATTAAACAAGTCCTAATCATCAAAAATTATCAATCAAAATTATTAAGTAATCCTCTTTGTCAAGTTATGTTACAATGATCCTCCAATCCTTATCAAAACCAGTGAGGAACGTCCTTATTCTCCACCAACTATTTCCTCGAGAATCAAACATCCCGATGACATAATCCACTCATCCTATAACATTTTCTTCTGAATCCTCAATTTGCTCCATTTCCTGCCACCCCGGTAATCGACCACCGTCGTCGTCGTCCGGATATTAATACCCGCGCAAAGGAATTTCCTGTCATCCCCTAAGGAATTTCCGTCTGTTTTCGTATCACTTTTATCATCTTTTCCAACTTTCCCCACTCGCTTGTTTTCATACCTCAAACCGTCCGTTTTATACACAATACATGAGGATTTTTTGGGAGAGTGTGTGAGGTATGCGATTGAAGTGATTTCACTTTTTGGTCATCTGTTGAAATTCCACAAGAATTGTTTCAATTGTCGAGAAGTCCAAATTTTGTTGCTTGTTCCATAACTGCGTGCTTTTTGCATGAAAATTTTTCGAAAACTGCTATATTCGAAAATTTTTTGTTTGAACGAATGTTCAAAGCGATGGCTCAGAAAACTCAAGTT</canonical>
            <polymorphic>TTCCGGTCTAAAGATATTTTAAATTCAAGCAACGTTTAATTTACTAATATAACGATTTCTTGAACTTTGAAAAACTTCTTGTATCTGAATTAATATACCGTAACATCTATAATAGAAGGGCCTAAACTTTGAGTCAATCTATCTCGCTTCCTGTCAAAGGTATAAAAATTTTGTCAACGGGTAATTTTTTTTATCATAAGATAAACAATATTTTATCAGTCGACAAAATTTTAATATCTTTCACAGAAATCGAGATAGTGGAGCTAAAAATTGACGGTTTGTGTGGCACTCTATCAGAGCGTTTACGGTAGTTCAGCTATCATTAAAAAACCGAACTAGTCAGATCCAATTAGGACAAGTATTCGATATCACAAAAGTTATAATTAAACAAGTCCTAATCATCAAAAATTATCAATCAAAATTATTAAGTAATCCTCTTTGTCAAGTTATGTTACAATGATCCTCCAATCCTTATCAAAACCAGTGAGGAACGTCCTTAWTCTCCACCAACTATTTCCTCGAGAATCAAACATCCCGATGACATAATCCACTCATCCTATAACATTTTCTTCTGAATCCTCAATTTGCTCCATTTCCTGCCACCCCGGTAATCGACCACCGTCGTCGTCGTCCGGATATTAATACCCGCGCAAAGGAATTTCCTGTCATCCCCTAAGGAATTTCCGTCTGTTTTCGTATCACTTTTATCATCTTTTCCAACTTTCCCCACTCGCTTGTTTTCATACCTCAAACCGTCCGTTTTATACACAATACATGAGGATTTTTTGGGAGAGTGTGTGAGGTATGCGATTGAAGTGATTTCACTTTTTGGTCATCTGTTGAAATTCCACAAGAATTGTTTCAATTGTCGAGAAGTCCAAATTTTGTTGCTTGTTCCATAACTGCGTGCTTTTTGCATGAAAATTTTTCGAAAACTGCTATATTCGAAAATTTTTTGTTTGAACGAATGTTCAAAGCGATGGCTCAGAAAACTCAAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTCAGATCCAATTAGGACAAG</pcr_primer_p1>
		<pcr_primer_p2>AAATTGAGGATTCAGAAGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGTCAGATCCAATTAGGACAAGTATTCGATATCACAAAAGTTATAATTAAACAAGTCCTAATCATCAAAAATTATCAATCAAAATTATTAAGTAATCCTCTTTGTCAAGTTATGTTACAATGATCCTCCAATCCTTATCAAAACCAGTGAGGAACGTCCTTATTCTCCACCAACTATTTCCTCGAGAATCAAACATCCCGATGACATAATCCACTCATCCTATAACATTTTCTTCTGAATCCTCAATTT</canonical_amplicon>
		<polymorphic_amplicon>TAGTCAGATCCAATTAGGACAAGTATTCGATATCACAAAAGTTATAATTAAACAAGTCCTAATCATCAAAAATTATCAATCAAAATTATTAAGTAATCCTCTTTGTCAAGTTATGTTACAATGATCCTCCAATCCTTATCAAAACCAGTGAGGAACGTCCTTAWTCTCCACCAACTATTTCCTCGAGAATCAAACATCCCGATGACATAATCCACTCATCCTATAACATTTTCTTCTGAATCCTCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4027</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>311331</contig_pos>
        <strand></strand>
        <context>AAGTAAATTT[C/T]YAAATTTGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGATAAAAAATTTGGACTAAAGATTCAAGAATTTTCTGGAAGTAAATTT</left_flank>
        <right_flank>AAAATTTGTTATTTTCAATATAAAATACCAAAACCTTGAGCTCCATTATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCCTATCTTCTGAAGTGATTTCTTGTCAATCATATCCATATGTTTCTTCGATGTGCAATTCCAACCACATTCATCAATTTTGAACCATGAAAAGTGACAGATGGGAATGAATGGTTGGGGGTAGTACATCAATATAATGGGACAAAAAAGACAAAGTGCAGCTGTGGAATCTGCAGAAGACTCCGCCCACTTTTGTGTGCTGCCTGTCACTTCTACCAGCTGGATTGTCTGCAAACTTTTTAGAACATTTTTTTCAGTTTACTGTAGAATTAGTGTGACCTTTAGACAAGGTTTTATGTCCCAAGAGACTGTACTTTTAATTGGAGTTGTTTATTTCTTCTCGAGAGGTTCAGACTTAGACATCATTACACTTTAAGAACAGAAACAAGGCTAACTAATCGGTTTAGTTTACAGTATGTTGTGTTCTTTTTTCTTGAGAAGACGTAACGATAAAAAATTTGGACTAAAGATTCAAGAATTTTCTGGAAGTAAATTTCAAAATTTGTTATTTTCAATATAAAATACCAAAACCTTGAGCTCCATTATTTCGATTATTGTGAGAGATATCAAAATTTCGTTAACTAATAAAACATTGCTGATATTATGATAAACGTTTTGTCAGTTGACAACTTGCTGATATCTTTTACATACTTGCAAAATTTGGGCCCTGTCCAGCCCGGCCCGGCGGGCCCGGGTCCTCCAAATTTAAAAAAAATTGAAATTTCAGAAATTCTTTCAATTTTTTTGTGAAAAAAACTATTCTGAAAAAAGCCCGGCCCGGCCCGTTGCAAGTATGATCTTTTACAGGAATCGAGATTAAGCTCAAAGTTGGCGGTTTGGGCGGCAGTTTGATATCAATTACCTCCGTTTTTTTGTTTATCATTCTTGCATACAACTTTGGCATTTTTTTGCAAGAAAACCTAAAGTTATTCCAGAATGTTTTTGTAAACAATATCACATTTTGTAATGTGGAATTTAAAAAAAACTATGATTTCAG</canonical>
            <polymorphic>TTTTCCTATCTTCTGAAGTGATTTCTTGTCAATCATATCCATATGTTTCTTCGATGTGCAATTCCAACCACATTCATCAATTTTGAACCATGAAAAGTGACAGATGGGAATGAATGGTTGGGGGTAGTACATCAATATAATGGGACAAAAAAGACAAAGTGCAGCTGTGGAATCTGCAGAAGACTCCGCCCACTTTTGTGTGCTGCCTGTCACTTCTACCAGCTGGATTGTCTGCAAACTTTTTAGAACATTTTTTTCAGTTTACTGTAGAATTAGTGTGACCTTTAGACAAGGTTTTATGTCCCAAGAGACTGTACTTTTAATTGGAGTTGTTTATTTCTTCTCGAGAGGTTCAGACTTAGACATCATTACACTTTAAGAACAGAAACAAGGCTAACTAATCGGTTTAGTTTACAGTATGTTGTGTTCTTTTTTCTTGAGAAGACGTAACGATAAAAAATTTGGACTAAAGATTCAAGAATTTTCTGGAAGTAAATTTYAAAATTTGTTATTTTCAATATAAAATACCAAAACCTTGAGCTCCATTATTTCGATTATTGTGAGAGATATCAAAATTTCGTTAACTAATAAAACATTGCTGATATTATGATAAACGTTTTGTCAGTTGACAACTTGCTGATATCTTTTACATACTTGCAAAATTTGGGCCCTGTCCAGCCCGGCCCGGCGGGCCCGGGTCCTCCAAATTTAAAAAAAATTGAAATTTCAGAAATTCTTTCAATTTTTTTGTGAAAAAAACTATTCTGAAAAAAGCCCGGCCCGGCCCGTTGCAAGTATGATCTTTTACAGGAATCGAGATTAAGCTCAAAGTTGGCGGTTTGGGCGGCAGTTTGATATCAATTACCTCCGTTTTTTTGTTTATCATTCTTGCATACAACTTTGGCATTTTTTTGCAAGAAAACCTAAAGTTATTCCAGAATGTTTTTGTAAACAATATCACATTTTGTAATGTGGAATTTAAAAAAAACTATGATTTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGAAGACGTAACGATAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TATGCAAGAATGATAAACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>459</pcr_amplicon_size>
		<canonical_amplicon>TTGAGAAGACGTAACGATAAAAAATTTGGACTAAAGATTCAAGAATTTTCTGGAAGTAAATTTCAAAATTTGTTATTTTCAATATAAAATACCAAAACCTTGAGCTCCATTATTTCGATTATTGTGAGAGATATCAAAATTTCGTTAACTAATAAAACATTGCTGATATTATGATAAACGTTTTGTCAGTTGACAACTTGCTGATATCTTTTACATACTTGCAAAATTTGGGCCCTGTCCAGCCCGGCCCGGCGGGCCCGGGTCCTCCAAATTTAAAAAAAATTGAAATTTCAGAAATTCTTTCAATTTTTTTGTGAAAAAAACTATTCTGAAAAAAGCCCGGCCCGGCCCGTTGCAAGTATGATCTTTTACAGGAATCGAGATTAAGCTCAAAGTTGGCGGTTTGGGCGGCAGTTTGATATCAATTACCTCCGTTTTTTTGTTTATCATTCTTGCATA</canonical_amplicon>
		<polymorphic_amplicon>TTGAGAAGACGTAACGATAAAAAATTTGGACTAAAGATTCAAGAATTTTCTGGAAGTAAATTTYAAAATTTGTTATTTTCAATATAAAATACCAAAACCTTGAGCTCCATTATTTCGATTATTGTGAGAGATATCAAAATTTCGTTAACTAATAAAACATTGCTGATATTATGATAAACGTTTTGTCAGTTGACAACTTGCTGATATCTTTTACATACTTGCAAAATTTGGGCCCTGTCCAGCCCGGCCCGGCGGGCCCGGGTCCTCCAAATTTAAAAAAAATTGAAATTTCAGAAATTCTTTCAATTTTTTTGTGAAAAAAACTATTCTGAAAAAAGCCCGGCCCGGCCCGTTGCAAGTATGATCTTTTACAGGAATCGAGATTAAGCTCAAAGTTGGCGGTTTGGGCGGCAGTTTGATATCAATTACCTCCGTTTTTTTGTTTATCATTCTTGCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4028</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>311310</contig_pos>
        <strand></strand>
        <context>WAAGATTCAA[G/A]RATTTTCTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTTTTTTCTTGAGAAGACGTAACGATAAAAAATTTGGACTAAAGATTCAA</left_flank>
        <right_flank>AATTTTCTGGAAGTAAATTTCAAAATTTGTTATTTTCAATATAAAATACC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGGAAGTCAATGTTCTTATTTTTCCTATCTTCTGAAGTGATTTCTTGTCAATCATATCCATATGTTTCTTCGATGTGCAATTCCAACCACATTCATCAATTTTGAACCATGAAAAGTGACAGATGGGAATGAATGGTTGGGGGTAGTACATCAATATAATGGGACAAAAAAGACAAAGTGCAGCTGTGGAATCTGCAGAAGACTCCGCCCACTTTTGTGTGCTGCCTGTCACTTCTACCAGCTGGATTGTCTGCAAACTTTTTAGAACATTTTTTTCAGTTTACTGTAGAATTAGTGTGACCTTTAGACAAGGTTTTATGTCCCAAGAGACTGTACTTTTAATTGGAGTTGTTTATTTCTTCTCGAGAGGTTCAGACTTAGACATCATTACACTTTAAGAACAGAAACAAGGCTAACTAATCGGTTTAGTTTACAGTATGTTGTGTTCTTTTTTCTTGAGAAGACGTAACGATAAAAAATTTGGACTAAAGATTCAAGAATTTTCTGGAAGTAAATTTCAAAATTTGTTATTTTCAATATAAAATACCAAAACCTTGAGCTCCATTATTTCGATTATTGTGAGAGATATCAAAATTTCGTTAACTAATAAAACATTGCTGATATTATGATAAACGTTTTGTCAGTTGACAACTTGCTGATATCTTTTACATACTTGCAAAATTTGGGCCCTGTCCAGCCCGGCCCGGCGGGCCCGGGTCCTCCAAATTTAAAAAAAATTGAAATTTCAGAAATTCTTTCAATTTTTTTGTGAAAAAAACTATTCTGAAAAAAGCCCGGCCCGGCCCGTTGCAAGTATGATCTTTTACAGGAATCGAGATTAAGCTCAAAGTTGGCGGTTTGGGCGGCAGTTTGATATCAATTACCTCCGTTTTTTTGTTTATCATTCTTGCATACAACTTTGGCATTTTTTTGCAAGAAAACCTAAAGTTATTCCAGAATGTTTTTGTAAACAATATCACATTTTGTAATGTGGAATT</canonical>
            <polymorphic>AAAGGAAGTCAATGTTCTTATTTTTCCTATCTTCTGAAGTGATTTCTTGTCAATCATATCCATATGTTTCTTCGATGTGCAATTCCAACCACATTCATCAATTTTGAACCATGAAAAGTGACAGATGGGAATGAATGGTTGGGGGTAGTACATCAATATAATGGGACAAAAAAGACAAAGTGCAGCTGTGGAATCTGCAGAAGACTCCGCCCACTTTTGTGTGCTGCCTGTCACTTCTACCAGCTGGATTGTCTGCAAACTTTTTAGAACATTTTTTTCAGTTTACTGTAGAATTAGTGTGACCTTTAGACAAGGTTTTATGTCCCAAGAGACTGTACTTTTAATTGGAGTTGTTTATTTCTTCTCGAGAGGTTCAGACTTAGACATCATTACACTTTAAGAACAGAAACAAGGCTAACTAATCGGTTTAGTTTACAGTATGTTGTGTTCTTTTTTCTTGAGAAGACGTAACGATAAAAAATTTGGACTAAAGATTCAARAATTTTCTGGAAGTAAATTTCAAAATTTGTTATTTTCAATATAAAATACCAAAACCTTGAGCTCCATTATTTCGATTATTGTGAGAGATATCAAAATTTCGTTAACTAATAAAACATTGCTGATATTATGATAAACGTTTTGTCAGTTGACAACTTGCTGATATCTTTTACATACTTGCAAAATTTGGGCCCTGTCCAGCCCGGCCCGGCGGGCCCGGGTCCTCCAAATTTAAAAAAAATTGAAATTTCAGAAATTCTTTCAATTTTTTTGTGAAAAAAACTATTCTGAAAAAAGCCCGGCCCGGCCCGTTGCAAGTATGATCTTTTACAGGAATCGAGATTAAGCTCAAAGTTGGCGGTTTGGGCGGCAGTTTGATATCAATTACCTCCGTTTTTTTGTTTATCATTCTTGCATACAACTTTGGCATTTTTTTGCAAGAAAACCTAAAGTTATTCCAGAATGTTTTTGTAAACAATATCACATTTTGTAATGTGGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>479 248 87 71 45 21 17 15 9 8</canonical_bands>
                <polymorphic_bands>479 248 87 71 45 36 17 9 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>364 329 120 91 44 40 10 2</canonical_bands>
                <polymorphic_bands>364 329 120 91 50 44 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGTTTAGTTTACAGTATGTTGTG</pcr_primer_p1>
		<pcr_primer_p2>TTGTATGCAAGAATGATAAACAA</pcr_primer_p2>
		<pcr_amplicon_size>496</pcr_amplicon_size>
		<canonical_amplicon>CGGTTTAGTTTACAGTATGTTGTGTTCTTTTTTCTTGAGAAGACGTAACGATAAAAAATTTGGACTAAAGATTCAAGAATTTTCTGGAAGTAAATTTCAAAATTTGTTATTTTCAATATAAAATACCAAAACCTTGAGCTCCATTATTTCGATTATTGTGAGAGATATCAAAATTTCGTTAACTAATAAAACATTGCTGATATTATGATAAACGTTTTGTCAGTTGACAACTTGCTGATATCTTTTACATACTTGCAAAATTTGGGCCCTGTCCAGCCCGGCCCGGCGGGCCCGGGTCCTCCAAATTTAAAAAAAATTGAAATTTCAGAAATTCTTTCAATTTTTTTGTGAAAAAAACTATTCTGAAAAAAGCCCGGCCCGGCCCGTTGCAAGTATGATCTTTTACAGGAATCGAGATTAAGCTCAAAGTTGGCGGTTTGGGCGGCAGTTTGATATCAATTACCTCCGTTTTTTTGTTTATCATTCTTGCATACAA</canonical_amplicon>
		<polymorphic_amplicon>CGGTTTAGTTTACAGTATGTTGTGTTCTTTTTTCTTGAGAAGACGTAACGATAAAAAATTTGGACTAAAGATTCAARAATTTTCTGGAAGTAAATTTCAAAATTTGTTATTTTCAATATAAAATACCAAAACCTTGAGCTCCATTATTTCGATTATTGTGAGAGATATCAAAATTTCGTTAACTAATAAAACATTGCTGATATTATGATAAACGTTTTGTCAGTTGACAACTTGCTGATATCTTTTACATACTTGCAAAATTTGGGCCCTGTCCAGCCCGGCCCGGCGGGCCCGGGTCCTCCAAATTTAAAAAAAATTGAAATTTCAGAAATTCTTTCAATTTTTTTGTGAAAAAAACTATTCTGAAAAAAGCCCGGCCCGGCCCGTTGCAAGTATGATCTTTTACAGGAATCGAGATTAAGCTCAAAGTTGGCGGTTTGGGCGGCAGTTTGATATCAATTACCTCCGTTTTTTTGTTTATCATTCTTGCATACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4029</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>311299</contig_pos>
        <strand></strand>
        <context>AAATTTGGAC[T/A]WAAGATTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TATGTTGTGTTCTTTTTTCTTGAGAAGACGTAACGATAAAAAATTTGGAC</left_flank>
        <right_flank>AAAGATTCAAGAATTTTCTGGAAGTAAATTTCAAAATTTGTTATTTTCAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATCATGTCAAAAGGAAGTCAATGTTCTTATTTTTCCTATCTTCTGAAGTGATTTCTTGTCAATCATATCCATATGTTTCTTCGATGTGCAATTCCAACCACATTCATCAATTTTGAACCATGAAAAGTGACAGATGGGAATGAATGGTTGGGGGTAGTACATCAATATAATGGGACAAAAAAGACAAAGTGCAGCTGTGGAATCTGCAGAAGACTCCGCCCACTTTTGTGTGCTGCCTGTCACTTCTACCAGCTGGATTGTCTGCAAACTTTTTAGAACATTTTTTTCAGTTTACTGTAGAATTAGTGTGACCTTTAGACAAGGTTTTATGTCCCAAGAGACTGTACTTTTAATTGGAGTTGTTTATTTCTTCTCGAGAGGTTCAGACTTAGACATCATTACACTTTAAGAACAGAAACAAGGCTAACTAATCGGTTTAGTTTACAGTATGTTGTGTTCTTTTTTCTTGAGAAGACGTAACGATAAAAAATTTGGACTAAAGATTCAAGAATTTTCTGGAAGTAAATTTCAAAATTTGTTATTTTCAATATAAAATACCAAAACCTTGAGCTCCATTATTTCGATTATTGTGAGAGATATCAAAATTTCGTTAACTAATAAAACATTGCTGATATTATGATAAACGTTTTGTCAGTTGACAACTTGCTGATATCTTTTACATACTTGCAAAATTTGGGCCCTGTCCAGCCCGGCCCGGCGGGCCCGGGTCCTCCAAATTTAAAAAAAATTGAAATTTCAGAAATTCTTTCAATTTTTTTGTGAAAAAAACTATTCTGAAAAAAGCCCGGCCCGGCCCGTTGCAAGTATGATCTTTTACAGGAATCGAGATTAAGCTCAAAGTTGGCGGTTTGGGCGGCAGTTTGATATCAATTACCTCCGTTTTTTTGTTTATCATTCTTGCATACAACTTTGGCATTTTTTTGCAAGAAAACCTAAAGTTATTCCAGAATGTTTTTGTAAACAATATCACATTTTGT</canonical>
            <polymorphic>GAATCATGTCAAAAGGAAGTCAATGTTCTTATTTTTCCTATCTTCTGAAGTGATTTCTTGTCAATCATATCCATATGTTTCTTCGATGTGCAATTCCAACCACATTCATCAATTTTGAACCATGAAAAGTGACAGATGGGAATGAATGGTTGGGGGTAGTACATCAATATAATGGGACAAAAAAGACAAAGTGCAGCTGTGGAATCTGCAGAAGACTCCGCCCACTTTTGTGTGCTGCCTGTCACTTCTACCAGCTGGATTGTCTGCAAACTTTTTAGAACATTTTTTTCAGTTTACTGTAGAATTAGTGTGACCTTTAGACAAGGTTTTATGTCCCAAGAGACTGTACTTTTAATTGGAGTTGTTTATTTCTTCTCGAGAGGTTCAGACTTAGACATCATTACACTTTAAGAACAGAAACAAGGCTAACTAATCGGTTTAGTTTACAGTATGTTGTGTTCTTTTTTCTTGAGAAGACGTAACGATAAAAAATTTGGACWAAAGATTCAAGAATTTTCTGGAAGTAAATTTCAAAATTTGTTATTTTCAATATAAAATACCAAAACCTTGAGCTCCATTATTTCGATTATTGTGAGAGATATCAAAATTTCGTTAACTAATAAAACATTGCTGATATTATGATAAACGTTTTGTCAGTTGACAACTTGCTGATATCTTTTACATACTTGCAAAATTTGGGCCCTGTCCAGCCCGGCCCGGCGGGCCCGGGTCCTCCAAATTTAAAAAAAATTGAAATTTCAGAAATTCTTTCAATTTTTTTGTGAAAAAAACTATTCTGAAAAAAGCCCGGCCCGGCCCGTTGCAAGTATGATCTTTTACAGGAATCGAGATTAAGCTCAAAGTTGGCGGTTTGGGCGGCAGTTTGATATCAATTACCTCCGTTTTTTTGTTTATCATTCTTGCATACAACTTTGGCATTTTTTTGCAAGAAAACCTAAAGTTATTCCAGAATGTTTTTGTAAACAATATCACATTTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTTTAGTTTACAGTATGTTGTG</pcr_primer_p1>
		<pcr_primer_p2>TTGTATGCAAGAATGATAAACAA</pcr_primer_p2>
		<pcr_amplicon_size>496</pcr_amplicon_size>
		<canonical_amplicon>CGGTTTAGTTTACAGTATGTTGTGTTCTTTTTTCTTGAGAAGACGTAACGATAAAAAATTTGGACTAAAGATTCAAGAATTTTCTGGAAGTAAATTTCAAAATTTGTTATTTTCAATATAAAATACCAAAACCTTGAGCTCCATTATTTCGATTATTGTGAGAGATATCAAAATTTCGTTAACTAATAAAACATTGCTGATATTATGATAAACGTTTTGTCAGTTGACAACTTGCTGATATCTTTTACATACTTGCAAAATTTGGGCCCTGTCCAGCCCGGCCCGGCGGGCCCGGGTCCTCCAAATTTAAAAAAAATTGAAATTTCAGAAATTCTTTCAATTTTTTTGTGAAAAAAACTATTCTGAAAAAAGCCCGGCCCGGCCCGTTGCAAGTATGATCTTTTACAGGAATCGAGATTAAGCTCAAAGTTGGCGGTTTGGGCGGCAGTTTGATATCAATTACCTCCGTTTTTTTGTTTATCATTCTTGCATACAA</canonical_amplicon>
		<polymorphic_amplicon>CGGTTTAGTTTACAGTATGTTGTGTTCTTTTTTCTTGAGAAGACGTAACGATAAAAAATTTGGACWAAAGATTCAAGAATTTTCTGGAAGTAAATTTCAAAATTTGTTATTTTCAATATAAAATACCAAAACCTTGAGCTCCATTATTTCGATTATTGTGAGAGATATCAAAATTTCGTTAACTAATAAAACATTGCTGATATTATGATAAACGTTTTGTCAGTTGACAACTTGCTGATATCTTTTACATACTTGCAAAATTTGGGCCCTGTCCAGCCCGGCCCGGCGGGCCCGGGTCCTCCAAATTTAAAAAAAATTGAAATTTCAGAAATTCTTTCAATTTTTTTGTGAAAAAAACTATTCTGAAAAAAGCCCGGCCCGGCCCGTTGCAAGTATGATCTTTTACAGGAATCGAGATTAAGCTCAAAGTTGGCGGTTTGGGCGGCAGTTTGATATCAATTACCTCCGTTTTTTTGTTTATCATTCTTGCATACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4030</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>311218</contig_pos>
        <strand>+</strand>
        <context>TAAGAACAGA[A/C]ACAAGGCTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCTTCTCGAGAGGTTCAGACTTAGACATCATTACACTTTAAGAACAGA</left_flank>
        <right_flank>ACAAGGCTAACTAATCGGTTTAGTTTACAGTATGTTGTGTTCTTTTTTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATTGCCATTCCATCACTTTGCCATTCTTTTCATTCCACCACCTACCAACCCATTTCTTTCGCCTAATTACTCCTAATTGAATCATGTCAAAAGGAAGTCAATGTTCTTATTTTTCCTATCTTCTGAAGTGATTTCTTGTCAATCATATCCATATGTTTCTTCGATGTGCAATTCCAACCACATTCATCAATTTTGAACCATGAAAAGTGACAGATGGGAATGAATGGTTGGGGGTAGTACATCAATATAATGGGACAAAAAAGACAAAGTGCAGCTGTGGAATCTGCAGAAGACTCCGCCCACTTTTGTGTGCTGCCTGTCACTTCTACCAGCTGGATTGTCTGCAAACTTTTTAGAACATTTTTTTCAGTTTACTGTAGAATTAGTGTGACCTTTAGACAAGGTTTTATGTCCCAAGAGACTGTACTTTTAATTGGAGTTGTTTATTTCTTCTCGAGAGGTTCAGACTTAGACATCATTACACTTTAAGAACAGAAACAAGGCTAACTAATCGGTTTAGTTTACAGTATGTTGTGTTCTTTTTTCTTGAGAAGACGTAACGATAAAAAATTTGGACTAAAGATTCAAGAATTTTCTGGAAGTAAATTTCAAAATTTGTTATTTTCAATATAAAATACCAAAACCTTGAGCTCCATTATTTCGATTATTGTGAGAGATATCAAAATTTCGTTAACTAATAAAACATTGCTGATATTATGATAAACGTTTTGTCAGTTGACAACTTGCTGATATCTTTTACATACTTGCAAAATTTGGGCCCTGTCCAGCCCGGCCCGGCGGGCCCGGGTCCTCCAAATTTAAAAAAAATTGAAATTTCAGAAATTCTTTCAATTTTTTTGTGAAAAAAACTATTCTGAAAAAAGCCCGGCCCGGCCCGTTGCAAGTATGATCTTTTACAGGAATCGAGATTAAGCTCAAAGTTGGCGGTTTGGGCGGCAGTTTGATATCAATTACCTCCGTTTTTTTGTTTATCATT</canonical>
            <polymorphic>TTTATTGCCATTCCATCACTTTGCCATTCTTTTCATTCCACCACCTACCAACCCATTTCTTTCGCCTAATTACTCCTAATTGAATCATGTCAAAAGGAAGTCAATGTTCTTATTTTTCCTATCTTCTGAAGTGATTTCTTGTCAATCATATCCATATGTTTCTTCGATGTGCAATTCCAACCACATTCATCAATTTTGAACCATGAAAAGTGACAGATGGGAATGAATGGTTGGGGGTAGTACATCAATATAATGGGACAAAAAAGACAAAGTGCAGCTGTGGAATCTGCAGAAGACTCCGCCCACTTTTGTGTGCTGCCTGTCACTTCTACCAGCTGGATTGTCTGCAAACTTTTTAGAACATTTTTTTCAGTTTACTGTAGAATTAGTGTGACCTTTAGACAAGGTTTTATGTCCCAAGAGACTGTACTTTTAATTGGAGTTGTTTATTTCTTCTCGAGAGGTTCAGACTTAGACATCATTACACTTTAAGAACAGAMACAAGGCTAACTAATCGGTTTAGTTTACAGTATGTTGTGTTCTTTTTTCTTGAGAAGACGTAACGATAAAAAATTTGGACTAAAGATTCAAGAATTTTCTGGAAGTAAATTTCAAAATTTGTTATTTTCAATATAAAATACCAAAACCTTGAGCTCCATTATTTCGATTATTGTGAGAGATATCAAAATTTCGTTAACTAATAAAACATTGCTGATATTATGATAAACGTTTTGTCAGTTGACAACTTGCTGATATCTTTTACATACTTGCAAAATTTGGGCCCTGTCCAGCCCGGCCCGGCGGGCCCGGGTCCTCCAAATTTAAAAAAAATTGAAATTTCAGAAATTCTTTCAATTTTTTTGTGAAAAAAACTATTCTGAAAAAAGCCCGGCCCGGCCCGTTGCAAGTATGATCTTTTACAGGAATCGAGATTAAGCTCAAAGTTGGCGGTTTGGGCGGCAGTTTGATATCAATTACCTCCGTTTTTTTGTTTATCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTCTACCAGCTGGATTGTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTATCGTTACGTCTTCTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTTCTACCAGCTGGATTGTCTGCAAACTTTTTAGAACATTTTTTTCAGTTTACTGTAGAATTAGTGTGACCTTTAGACAAGGTTTTATGTCCCAAGAGACTGTACTTTTAATTGGAGTTGTTTATTTCTTCTCGAGAGGTTCAGACTTAGACATCATTACACTTTAAGAACAGAAACAAGGCTAACTAATCGGTTTAGTTTACAGTATGTTGTGTTCTTTTTTCTTGAGAAGACGTAACGATAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACTTCTACCAGCTGGATTGTCTGCAAACTTTTTAGAACATTTTTTTCAGTTTACTGTAGAATTAGTGTGACCTTTAGACAAGGTTTTATGTCCCAAGAGACTGTACTTTTAATTGGAGTTGTTTATTTCTTCTCGAGAGGTTCAGACTTAGACATCATTACACTTTAAGAACAGAMACAAGGCTAACTAATCGGTTTAGTTTACAGTATGTTGTGTTCTTTTTTCTTGAGAAGACGTAACGATAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4082</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>382908</contig_pos>
        <strand>+</strand>
        <context>ATCGATGACG[C/T]CAACAGTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAATATGCATGTTTTTAATTGAAAATAAAACATCTTCAGATCGATGACG</left_flank>
        <right_flank>CAACAGTTTTGATAATACCATTGTTGGTCCATTCGTTGAGAAAATTAAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGACGAGTTTGCTGATTCGAAGGCGATGGTTGCTTCAGGCTTGTTGAATGATATCAAAAACTCGGCAAGAAGTAAATTGAACTTTTTGAAATCTTTTGTATGGAATTTATGATTTTTCAGTTGTGGTTTGCTTGTTTTCAAATACCAGAGAATCGTCTCGAGAATTTTTGACAGCAGCCAATTCTCAAGGAATGAGTGTCAATGAATACGGATATGTATTTCCCTGGCTTCAGGATGGTGGAAAGGATATTGCTCCGTGGACTGGATCTGATGGATCTATGCTTCAGAAAGTCAAAGATCAGTATGCAAATGCTATCATTGTAAGTTCATGTGTCAGTTGCTCCGATTAACGTTTGGTGGGCGATTGGCGGGCGACGAGCGGGCGACGAGCGGGCGACGGGTGGGCGACGGGCGGGTGAAATTCGTCTGAAACGGAAAGCTTAGCTCTGAATATGCATGTTTTTAATTGAAAATAAAACATCTTCAGATCGATGACGCCAACAGTTTTGATAATACCATTGTTGGTCCATTCGTTGAGAAAATTAAAGATGTAGGACTGACAGAAGCAGATGTGGATATTGCCAACATTTATGGCTACCTGTATTTATTTGATGCTCTTAAACTCTATGCCCTTGCTGCTAGAAAAGTTTTGAATGAGACTGGAAAAGCGGAAAATCTTCTTAATGGACGAATGATCTGGCAGAATATGAGAAAGATGAAATTCGTCGGAATGGTCGGTGCATCAGGAATTGCTTCTGGCCAGGTTACAATGGACGATCGTGCAGAAAGAGCTCCGCTTTATCGTGGTTTCTTTGTGTCTCCAAACACAGATGCAGTACTTCCAATGGTCCATATGGAACCTACAATGCTCGATAACTGTGATGGAATTGCTAATAAATCAGGATGCTATGAGATCATTGTTACAGATATGATGAAAGATTTCTGGCCGTCGATAGATCGAAAAATGCCCAAGGTTTTGTAATCTGAAAATATAATAT</canonical>
            <polymorphic>TTTGACGAGTTTGCTGATTCGAAGGCGATGGTTGCTTCAGGCTTGTTGAATGATATCAAAAACTCGGCAAGAAGTAAATTGAACTTTTTGAAATCTTTTGTATGGAATTTATGATTTTTCAGTTGTGGTTTGCTTGTTTTCAAATACCAGAGAATCGTCTCGAGAATTTTTGACAGCAGCCAATTCTCAAGGAATGAGTGTCAATGAATACGGATATGTATTTCCCTGGCTTCAGGATGGTGGAAAGGATATTGCTCCGTGGACTGGATCTGATGGATCTATGCTTCAGAAAGTCAAAGATCAGTATGCAAATGCTATCATTGTAAGTTCATGTGTCAGTTGCTCCGATTAACGTTTGGTGGGCGATTGGCGGGCGACGAGCGGGCGACGAGCGGGCGACGGGTGGGCGACGGGCGGGTGAAATTCGTCTGAAACGGAAAGCTTAGCTCTGAATATGCATGTTTTTAATTGAAAATAAAACATCTTCAGATCGATGACGYCAACAGTTTTGATAATACCATTGTTGGTCCATTCGTTGAGAAAATTAAAGATGTAGGACTGACAGAAGCAGATGTGGATATTGCCAACATTTATGGCTACCTGTATTTATTTGATGCTCTTAAACTCTATGCCCTTGCTGCTAGAAAAGTTTTGAATGAGACTGGAAAAGCGGAAAATCTTCTTAATGGACGAATGATCTGGCAGAATATGAGAAAGATGAAATTCGTCGGAATGGTCGGTGCATCAGGAATTGCTTCTGGCCAGGTTACAATGGACGATCGTGCAGAAAGAGCTCCGCTTTATCGTGGTTTCTTTGTGTCTCCAAACACAGATGCAGTACTTCCAATGGTCCATATGGAACCTACAATGCTCGATAACTGTGATGGAATTGCTAATAAATCAGGATGCTATGAGATCATTGTTACAGATATGATGAAAGATTTCTGGCCGTCGATAGATCGAAAAATGCCCAAGGTTTTGTAATCTGAAAATATAATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGTAAGTTCATGTGTCAGTTG</pcr_primer_p1>
		<pcr_primer_p2>GCTTCTGTCAGTCCTACATCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTGTAAGTTCATGTGTCAGTTGCTCCGATTAACGTTTGGTGGGCGATTGGCGGGCGACGAGCGGGCGACGAGCGGGCGACGGGTGGGCGACGGGCGGGTGAAATTCGTCTGAAACGGAAAGCTTAGCTCTGAATATGCATGTTTTTAATTGAAAATAAAACATCTTCAGATCGATGACGCCAACAGTTTTGATAATACCATTGTTGGTCCATTCGTTGAGAAAATTAAAGATGTAGGACTGACAGAAGC</canonical_amplicon>
		<polymorphic_amplicon>ATTGTAAGTTCATGTGTCAGTTGCTCCGATTAACGTTTGGTGGGCGATTGGCGGGCGACGAGCGGGCGACGAGCGGGCGACGGGTGGGCGACGGGCGGGTGAAATTCGTCTGAAACGGAAAGCTTAGCTCTGAATATGCATGTTTTTAATTGAAAATAAAACATCTTCAGATCGATGACGYCAACAGTTTTGATAATACCATTGTTGGTCCATTCGTTGAGAAAATTAAAGATGTAGGACTGACAGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4083</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>426693</contig_pos>
        <strand>+</strand>
        <context>TGTTCATTGA[A/G]AAATTCTAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTATCTGCGAATCTCTTTTTTTCCGAAAAGTCCATAGTTGTTCATTGA</left_flank>
        <right_flank>AAATTCTAGTTTTATGAATCTCTTTTATTTTTCTCAATTCGCTTTTTTCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAACCGATCGTGTGATCGGTGGACTTGGGCGATTCGAGAGCTGCGGTGAGATTGTGTGTCTCAGCGCCATTTTCTAGTAGATTTTGTATCTGAAACATGACAATAAGTAAGAGAAATCACTTTCGGTGTATTTTTTTTCTGTCAATTCATAATTATCAACTTTAAATGGCTTACTTGTCCGTTAATTGAAATATTAAAAAAATAAAAGATGAGTTGAAAAGCGAAAAAATGTTCGGCTCAGTTTTCTTGGTGAGACCTGCGAATAATCTTGGTGTAACCCTTTGAAGTACTGTAGAAAAATTTCGGTCATAAAATTTATCGAAAAACAACAATGTTTGATACTTTCTAGTATTTAGGTTTGATACTTTCTAGTATTTTACATTATTTAAAAGTGGCTACGCTTGCATGAATTGTCATTTCATCTCAATTTCATACTTTTCCACCCTCCCATTATCTGCGAATCTCTTTTTTTCCGAAAAGTCCATAGTTGTTCATTGAGAAATTCTAGTTTTATGAATCTCTTTTATTTTTCTCAATTCGCTTTTTTCCCTCCTCCAGGTTGCGTAAACCAAGTGAGTGGCTAGACTTGTGTGTGAGACGAAAATCTGCCAAAAAGGACTAATTAAGTTATTACCCGCACCATCCAAACCGTCTCACCATATGAATAGGTGAAAGTTAGGATAATTAATGAACTTCTCTACTTGTTCTTTTTGTTCGATTTCATTCTGTAAATTTTCTGAATCCACAATTTTTACAATCACTTTTTTTCCACTTTGTAACTTTGGATCCGCTACGTTCTTCTGCGAAACGCTCAATTAAGGAATGAGCGGCGAAACTCCGAATGGTGACCCGTCTACTTATCGGTGCGCACACCAATTTGTTTTCCTCTTCAAACTGACGACGCAACATACAATAACAATTACTGAGACGACGACGTCGATTTCTGTTATTATCCTCTCTGCATATTCCGATAAACTTTCCTTTTCCTTTTTGAATAAG</canonical>
            <polymorphic>GAAACCGATCGTGTGATCGGTGGACTTGGGCGATTCGAGAGCTGCGGTGAGATTGTGTGTCTCAGCGCCATTTTCTAGTAGATTTTGTATCTGAAACATGACAATAAGTAAGAGAAATCACTTTCGGTGTATTTTTTTTCTGTCAATTCATAATTATCAACTTTAAATGGCTTACTTGTCCGTTAATTGAAATATTAAAAAAATAAAAGATGAGTTGAAAAGCGAAAAAATGTTCGGCTCAGTTTTCTTGGTGAGACCTGCGAATAATCTTGGTGTAACCCTTTGAAGTACTGTAGAAAAATTTCGGTCATAAAATTTATCGAAAAACAACAATGTTTGATACTTTCTAGTATTTAGGTTTGATACTTTCTAGTATTTTACATTATTTAAAAGTGGCTACGCTTGCATGAATTGTCATTTCATCTCAATTTCATACTTTTCCACCCTCCCATTATCTGCGAATCTCTTTTTTTCCGAAAAGTCCATAGTTGTTCATTGARAAATTCTAGTTTTATGAATCTCTTTTATTTTTCTCAATTCGCTTTTTTCCCTCCTCCAGGTTGCGTAAACCAAGTGAGTGGCTAGACTTGTGTGTGAGACGAAAATCTGCCAAAAAGGACTAATTAAGTTATTACCCGCACCATCCAAACCGTCTCACCATATGAATAGGTGAAAGTTAGGATAATTAATGAACTTCTCTACTTGTTCTTTTTGTTCGATTTCATTCTGTAAATTTTCTGAATCCACAATTTTTACAATCACTTTTTTTCCACTTTGTAACTTTGGATCCGCTACGTTCTTCTGCGAAACGCTCAATTAAGGAATGAGCGGCGAAACTCCGAATGGTGACCCGTCTACTTATCGGTGCGCACACCAATTTGTTTTCCTCTTCAAACTGACGACGCAACATACAATAACAATTACTGAGACGACGACGTCGATTTCTGTTATTATCCTCTCTGCATATTCCGATAAACTTTCCTTTTCCTTTTTGAATAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACATTATTTAAAAGTGGCTACG</pcr_primer_p1>
		<pcr_primer_p2>TAATTAGTCCTTTTTGGCAGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTACATTATTTAAAAGTGGCTACGCTTGCATGAATTGTCATTTCATCTCAATTTCATACTTTTCCACCCTCCCATTATCTGCGAATCTCTTTTTTTCCGAAAAGTCCATAGTTGTTCATTGAGAAATTCTAGTTTTATGAATCTCTTTTATTTTTCTCAATTCGCTTTTTTCCCTCCTCCAGGTTGCGTAAACCAAGTGAGTGGCTAGACTTGTGTGTGAGACGAAAATCTGCCAAAAAGGACTAATTA</canonical_amplicon>
		<polymorphic_amplicon>TTACATTATTTAAAAGTGGCTACGCTTGCATGAATTGTCATTTCATCTCAATTTCATACTTTTCCACCCTCCCATTATCTGCGAATCTCTTTTTTTCCGAAAAGTCCATAGTTGTTCATTGARAAATTCTAGTTTTATGAATCTCTTTTATTTTTCTCAATTCGCTTTTTTCCCTCCTCCAGGTTGCGTAAACCAAGTGAGTGGCTAGACTTGTGTGTGAGACGAAAATCTGCCAAAAAGGACTAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4084</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>435343</contig_pos>
        <strand>+</strand>
        <context>TAAAATGCGC[A/G]AATAAAGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGAATGGGAAGAATGATGGAAACTATGCAGTTATCAACTTAAAATGCGC</left_flank>
        <right_flank>AATAAAGATTGAGACCTAATCTAAACCATGATTTTCTAGATGAATACACA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGTTTTTCATAGCAACGATCGATGCGTACCCATCTAATTATCTACTTGTCGTTTTCTCTCTGCTTGCCTTTGCCGAAAATCATCACCTTTGCCGAAAATCATCATCGCTCTCCTCTTTAACGTCTTCCTCGCAGTACTAATTGTGCTGGATTACGTACTCGAAGCCCGTTTCCGGAATTCGGAATTCACGGGGACAAGGTCAGATGGAGTATCGAGATTATGAAAGCGTAGGGAAGAGAGATGACACATTTTTTGTTGTGGTGGAGAAGTTAAAGGAGGGGAAGCAGGAGGAGACAAACAAGCACTTGATGAGACCATATGTTTTAATTATACAACGAAGAAGAAAAAGAGGAACTGCACCAGATTGTGACAGCACTTCGACTGCTGAATCCTGAATTTAAAATTACCCCCTCTTGAACGTTTATTTTGAGAGAATGAACACTTTAGACGGAATGGGAAGAATGATGGAAACTATGCAGTTATCAACTTAAAATGCGCAAATAAAGATTGAGACCTAATCTAAACCATGATTTTCTAGATGAATACACAACGAGGGAAATTAACAATTGATCGTATTCGACAAGAGGATTTTGGATTGTACCAATGTGAAGCCGTCAACGAAGCTGGAGCTGATATGAGTAGTGTATGGGTCAAAGAAGGTGATATCAACAATGACACGATGGTGATGGGAATGTCAGAAGATGGACGGTCTCTGGAGGAAGAGATTAGTATGGAGACACCTCCGCCACGGAAGCTCAAGTTTTTCGATAGCTCTAAAAGTCAGGAACAACTCTTCCCATTCACTTCGGATATTGAATCTTCTCAACGATTGACCAAAACTCCAAAGGATCTAACTGCTGCTTCTGGAACTGATAAGATCACTTTAGAATGTGCTGCTGCTGGAAGTCCCCCACCACATATTGTCTGGTTTCTGAATGGAAACGGAATTCAAACGGACAGTGTGAAGTACGATTTTTCAAATGGAGATCTTACAATACA</canonical>
            <polymorphic>ACGTTTTTCATAGCAACGATCGATGCGTACCCATCTAATTATCTACTTGTCGTTTTCTCTCTGCTTGCCTTTGCCGAAAATCATCACCTTTGCCGAAAATCATCATCGCTCTCCTCTTTAACGTCTTCCTCGCAGTACTAATTGTGCTGGATTACGTACTCGAAGCCCGTTTCCGGAATTCGGAATTCACGGGGACAAGGTCAGATGGAGTATCGAGATTATGAAAGCGTAGGGAAGAGAGATGACACATTTTTTGTTGTGGTGGAGAAGTTAAAGGAGGGGAAGCAGGAGGAGACAAACAAGCACTTGATGAGACCATATGTTTTAATTATACAACGAAGAAGAAAAAGAGGAACTGCACCAGATTGTGACAGCACTTCGACTGCTGAATCCTGAATTTAAAATTACCCCCTCTTGAACGTTTATTTTGAGAGAATGAACACTTTAGACGGAATGGGAAGAATGATGGAAACTATGCAGTTATCAACTTAAAATGCGCRAATAAAGATTGAGACCTAATCTAAACCATGATTTTCTAGATGAATACACAACGAGGGAAATTAACAATTGATCGTATTCGACAAGAGGATTTTGGATTGTACCAATGTGAAGCCGTCAACGAAGCTGGAGCTGATATGAGTAGTGTATGGGTCAAAGAAGGTGATATCAACAATGACACGATGGTGATGGGAATGTCAGAAGATGGACGGTCTCTGGAGGAAGAGATTAGTATGGAGACACCTCCGCCACGGAAGCTCAAGTTTTTCGATAGCTCTAAAAGTCAGGAACAACTCTTCCCATTCACTTCGGATATTGAATCTTCTCAACGATTGACCAAAACTCCAAAGGATCTAACTGCTGCTTCTGGAACTGATAAGATCACTTTAGAATGTGCTGCTGCTGGAAGTCCCCCACCACATATTGTCTGGTTTCTGAATGGAAACGGAATTCAAACGGACAGTGTGAAGTACGATTTTTCAAATGGAGATCTTACAATACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCGCA</site>
                <isoschizomers>
                    <enzyme>Acc16I</enzyme>
                    <enzyme>AviII</enzyme>
                    <enzyme>FspI</enzyme>
                    <enzyme>MstI</enzyme>
                    <enzyme>NsbI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTTGAACGTTTATTTTGAGAG</pcr_primer_p1>
		<pcr_primer_p2>TCTTTGACCCATACACTACTCAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTCTTGAACGTTTATTTTGAGAGAATGAACACTTTAGACGGAATGGGAAGAATGATGGAAACTATGCAGTTATCAACTTAAAATGCGCAAATAAAGATTGAGACCTAATCTAAACCATGATTTTCTAGATGAATACACAACGAGGGAAATTAACAATTGATCGTATTCGACAAGAGGATTTTGGATTGTACCAATGTGAAGCCGTCAACGAAGCTGGAGCTGATATGAGTAGTGTATGGGTCAAAGA</canonical_amplicon>
		<polymorphic_amplicon>CTCTTGAACGTTTATTTTGAGAGAATGAACACTTTAGACGGAATGGGAAGAATGATGGAAACTATGCAGTTATCAACTTAAAATGCGCRAATAAAGATTGAGACCTAATCTAAACCATGATTTTCTAGATGAATACACAACGAGGGAAATTAACAATTGATCGTATTCGACAAGAGGATTTTGGATTGTACCAATGTGAAGCCGTCAACGAAGCTGGAGCTGATATGAGTAGTGTATGGGTCAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4085</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>435683</contig_pos>
        <strand>+</strand>
        <context>ATTGACCAAA[A/G]CTCCAAAGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACTCTTCCCATTCACTTCGGATATTGAATCTTCTCAACGATTGACCAAA</left_flank>
        <right_flank>CTCCAAAGGATCTAACTGCTGCTTCTGGAACTGATAAGATCACTTTAGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGAAAAAGAGGAACTGCACCAGATTGTGACAGCACTTCGACTGCTGAATCCTGAATTTAAAATTACCCCCTCTTGAACGTTTATTTTGAGAGAATGAACACTTTAGACGGAATGGGAAGAATGATGGAAACTATGCAGTTATCAACTTAAAATGCGCAAATAAAGATTGAGACCTAATCTAAACCATGATTTTCTAGATGAATACACAACGAGGGAAATTAACAATTGATCGTATTCGACAAGAGGATTTTGGATTGTACCAATGTGAAGCCGTCAACGAAGCTGGAGCTGATATGAGTAGTGTATGGGTCAAAGAAGGTGATATCAACAATGACACGATGGTGATGGGAATGTCAGAAGATGGACGGTCTCTGGAGGAAGAGATTAGTATGGAGACACCTCCGCCACGGAAGCTCAAGTTTTTCGATAGCTCTAAAAGTCAGGAACAACTCTTCCCATTCACTTCGGATATTGAATCTTCTCAACGATTGACCAAAACTCCAAAGGATCTAACTGCTGCTTCTGGAACTGATAAGATCACTTTAGAATGTGCTGCTGCTGGAAGTCCCCCACCACATATTGTCTGGTTTCTGAATGGAAACGGAATTCAAACGGACAGTGTGAAGTACGATTTTTCAAATGGAGATCTTACAATACACGATATACGAAAATCTGATGAAGGAGAATACACATGCGAAATTAGTGGAACTGATGTTAAAGCATCAGCTAATGTTCAAGTGAACGGTGACTCGTTGATAGAATACGGACCAGCTGATCAAAAAAGTCTAATCGGTACCAACGTTGAATTTTCGTGTGAAGTAGCTAAAGAATATGCTAGAAAAGCAACAGTGGAGTGGTATTTGAATGACGCCTTACTGCCTGTCAACGGAAATTCGGGGCTCAGAATTTCTAGAAATCGAAAAGGAAGTCTGATTATTCGACAAGTTGGACCTGACAATACTGGAGAATACAGATGTCGTGTGACAGTCGATGGGAGA</canonical>
            <polymorphic>GAAGAAAAAGAGGAACTGCACCAGATTGTGACAGCACTTCGACTGCTGAATCCTGAATTTAAAATTACCCCCTCTTGAACGTTTATTTTGAGAGAATGAACACTTTAGACGGAATGGGAAGAATGATGGAAACTATGCAGTTATCAACTTAAAATGCGCAAATAAAGATTGAGACCTAATCTAAACCATGATTTTCTAGATGAATACACAACGAGGGAAATTAACAATTGATCGTATTCGACAAGAGGATTTTGGATTGTACCAATGTGAAGCCGTCAACGAAGCTGGAGCTGATATGAGTAGTGTATGGGTCAAAGAAGGTGATATCAACAATGACACGATGGTGATGGGAATGTCAGAAGATGGACGGTCTCTGGAGGAAGAGATTAGTATGGAGACACCTCCGCCACGGAAGCTCAAGTTTTTCGATAGCTCTAAAAGTCAGGAACAACTCTTCCCATTCACTTCGGATATTGAATCTTCTCAACGATTGACCAAARCTCCAAAGGATCTAACTGCTGCTTCTGGAACTGATAAGATCACTTTAGAATGTGCTGCTGCTGGAAGTCCCCCACCACATATTGTCTGGTTTCTGAATGGAAACGGAATTCAAACGGACAGTGTGAAGTACGATTTTTCAAATGGAGATCTTACAATACACGATATACGAAAATCTGATGAAGGAGAATACACATGCGAAATTAGTGGAACTGATGTTAAAGCATCAGCTAATGTTCAAGTGAACGGTGACTCGTTGATAGAATACGGACCAGCTGATCAAAAAAGTCTAATCGGTACCAACGTTGAATTTTCGTGTGAAGTAGCTAAAGAATATGCTAGAAAAGCAACAGTGGAGTGGTATTTGAATGACGCCTTACTGCCTGTCAACGGAAATTCGGGGCTCAGAATTTCTAGAAATCGAAAAGGAAGTCTGATTATTCGACAAGTTGGACCTGACAATACTGGAGAATACAGATGTCGTGTGACAGTCGATGGGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAAGTTTTTCGATAGCTCTAA</pcr_primer_p1>
		<pcr_primer_p2>CGTGTATTGTAAGATCTCCATTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTCAAGTTTTTCGATAGCTCTAAAAGTCAGGAACAACTCTTCCCATTCACTTCGGATATTGAATCTTCTCAACGATTGACCAAAACTCCAAAGGATCTAACTGCTGCTTCTGGAACTGATAAGATCACTTTAGAATGTGCTGCTGCTGGAAGTCCCCCACCACATATTGTCTGGTTTCTGAATGGAAACGGAATTCAAACGGACAGTGTGAAGTACGATTTTTCAAATGGAGATCTTACAATACACG</canonical_amplicon>
		<polymorphic_amplicon>CTCAAGTTTTTCGATAGCTCTAAAAGTCAGGAACAACTCTTCCCATTCACTTCGGATATTGAATCTTCTCAACGATTGACCAAARCTCCAAAGGATCTAACTGCTGCTTCTGGAACTGATAAGATCACTTTAGAATGTGCTGCTGCTGGAAGTCCCCCACCACATATTGTCTGGTTTCTGAATGGAAACGGAATTCAAACGGACAGTGTGAAGTACGATTTTTCAAATGGAGATCTTACAATACACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4086</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>435769</contig_pos>
        <strand>+</strand>
        <context>CACATATTGT[A/C]TGGTTTCTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGATCACTTTAGAATGTGCTGCTGCTGGAAGTCCCCCACCACATATTGT</left_flank>
        <right_flank>TGGTTTCTGAATGGAAACGGAATTCAAACGGACAGTGTGAAGTACGATTT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAGAGAATGAACACTTTAGACGGAATGGGAAGAATGATGGAAACTATGCAGTTATCAACTTAAAATGCGCAAATAAAGATTGAGACCTAATCTAAACCATGATTTTCTAGATGAATACACAACGAGGGAAATTAACAATTGATCGTATTCGACAAGAGGATTTTGGATTGTACCAATGTGAAGCCGTCAACGAAGCTGGAGCTGATATGAGTAGTGTATGGGTCAAAGAAGGTGATATCAACAATGACACGATGGTGATGGGAATGTCAGAAGATGGACGGTCTCTGGAGGAAGAGATTAGTATGGAGACACCTCCGCCACGGAAGCTCAAGTTTTTCGATAGCTCTAAAAGTCAGGAACAACTCTTCCCATTCACTTCGGATATTGAATCTTCTCAACGATTGACCAAAACTCCAAAGGATCTAACTGCTGCTTCTGGAACTGATAAGATCACTTTAGAATGTGCTGCTGCTGGAAGTCCCCCACCACATATTGTCTGGTTTCTGAATGGAAACGGAATTCAAACGGACAGTGTGAAGTACGATTTTTCAAATGGAGATCTTACAATACACGATATACGAAAATCTGATGAAGGAGAATACACATGCGAAATTAGTGGAACTGATGTTAAAGCATCAGCTAATGTTCAAGTGAACGGTGACTCGTTGATAGAATACGGACCAGCTGATCAAAAAAGTCTAATCGGTACCAACGTTGAATTTTCGTGTGAAGTAGCTAAAGAATATGCTAGAAAAGCAACAGTGGAGTGGTATTTGAATGACGCCTTACTGCCTGTCAACGGAAATTCGGGGCTCAGAATTTCTAGAAATCGAAAAGGAAGTCTGATTATTCGACAAGTTGGACCTGACAATACTGGAGAATACAGATGTCGTGTGACAGTCGATGGGAGAGAGGAGAACGCTAGTGCCATGCTTCAAATTATTGGTAAGAATTAGATTTTGGACTTCAATGAAATATAATTTTTATTGCAGAGAAG</canonical>
            <polymorphic>TTTGAGAGAATGAACACTTTAGACGGAATGGGAAGAATGATGGAAACTATGCAGTTATCAACTTAAAATGCGCAAATAAAGATTGAGACCTAATCTAAACCATGATTTTCTAGATGAATACACAACGAGGGAAATTAACAATTGATCGTATTCGACAAGAGGATTTTGGATTGTACCAATGTGAAGCCGTCAACGAAGCTGGAGCTGATATGAGTAGTGTATGGGTCAAAGAAGGTGATATCAACAATGACACGATGGTGATGGGAATGTCAGAAGATGGACGGTCTCTGGAGGAAGAGATTAGTATGGAGACACCTCCGCCACGGAAGCTCAAGTTTTTCGATAGCTCTAAAAGTCAGGAACAACTCTTCCCATTCACTTCGGATATTGAATCTTCTCAACGATTGACCAAAACTCCAAAGGATCTAACTGCTGCTTCTGGAACTGATAAGATCACTTTAGAATGTGCTGCTGCTGGAAGTCCCCCACCACATATTGTMTGGTTTCTGAATGGAAACGGAATTCAAACGGACAGTGTGAAGTACGATTTTTCAAATGGAGATCTTACAATACACGATATACGAAAATCTGATGAAGGAGAATACACATGCGAAATTAGTGGAACTGATGTTAAAGCATCAGCTAATGTTCAAGTGAACGGTGACTCGTTGATAGAATACGGACCAGCTGATCAAAAAAGTCTAATCGGTACCAACGTTGAATTTTCGTGTGAAGTAGCTAAAGAATATGCTAGAAAAGCAACAGTGGAGTGGTATTTGAATGACGCCTTACTGCCTGTCAACGGAAATTCGGGGCTCAGAATTTCTAGAAATCGAAAAGGAAGTCTGATTATTCGACAAGTTGGACCTGACAATACTGGAGAATACAGATGTCGTGTGACAGTCGATGGGAGAGAGGAGAACGCTAGTGCCATGCTTCAAATTATTGGTAAGAATTAGATTTTGGACTTCAATGAAATATAATTTTTATTGCAGAGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAAGTTTTTCGATAGCTCTAA</pcr_primer_p1>
		<pcr_primer_p2>CGTGTATTGTAAGATCTCCATTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTCAAGTTTTTCGATAGCTCTAAAAGTCAGGAACAACTCTTCCCATTCACTTCGGATATTGAATCTTCTCAACGATTGACCAAAACTCCAAAGGATCTAACTGCTGCTTCTGGAACTGATAAGATCACTTTAGAATGTGCTGCTGCTGGAAGTCCCCCACCACATATTGTCTGGTTTCTGAATGGAAACGGAATTCAAACGGACAGTGTGAAGTACGATTTTTCAAATGGAGATCTTACAATACACG</canonical_amplicon>
		<polymorphic_amplicon>CTCAAGTTTTTCGATAGCTCTAAAAGTCAGGAACAACTCTTCCCATTCACTTCGGATATTGAATCTTCTCAACGATTGACCAAAACTCCAAAGGATCTAACTGCTGCTTCTGGAACTGATAAGATCACTTTAGAATGTGCTGCTGCTGGAAGTCCCCCACCACATATTGTMTGGTTTCTGAATGGAAACGGAATTCAAACGGACAGTGTGAAGTACGATTTTTCAAATGGAGATCTTACAATACACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4087</snp_id>
        <super_contig>c001800837.Contig1</super_contig>
        <contig_pos>21917</contig_pos>
        <strand></strand>
        <context>AAAAAGCTGG[A/G]AAAAAARCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTATTTTTTTTCCACTTTAAACTTTTTTCAGAGCTCAAAAAAAGCTGG</left_flank>
        <right_flank>AAAAAAACAATGAGTCAGACTCACCTTGCAGTCTTAGAATGTGCTCTCCG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTCAAGAATGAAATGTCTGAATTTTCAAAAAAACCCCGCAAACTCAAAATAGATTTTGATTTTTATTTGGTTTCTCTTCAAAATCACGGAGCCCCCTAAAATCAAAAACCAACCGCGGAGCACTCGTAAACTCCATCATCTTTCTCTGGCTGATAATTGGTGATCTCCACGTAGGACGCATCTCTGGAAGAACAAGAAAAACTGGTTGCTGTTTAACTTGTAATTGATCATTCTGTCTTCTTACATTTTCGTTTTGACATATTCTGGTTTAATCACCGTCCCGCCACGCAGCCATCGTAACGATCCGGATTTTCCGCTTGGATGTTCACAACGAATCAACACACTGGATCCCTGCTCCACGCCTATTAGGGTTGTGCCAGCGTGAACACTTTCTGAAAAATTTTTGGAATTTTTTTCTTATCAATATTATTCAAAATGACTCATGTTTTCTATTTTTTTTCCACTTTAAACTTTTTTCAGAGCTCAAAAAAAGCTGGAAAAAAAACAATGAGTCAGACTCACCTTGCAGTCTTAGAATGTGCTCTCCGGCCATTGTGGCACCAAAAATAGTGGAAAGTAAGAAAAGAATTTGAACAATGTTATAAAGTTGTCCAGACATTTTTCTATATGGGTCTGTAATACATATTATTATGTCCAGATGAACAAGAATTGAGGGAGTGTCGTGGGAAGAGGATGGCAACGAAAAAAAAAATAATAAGAAGGACAACTGGTTGCTTGGTATGTGACGGATCGTATAATACCAAAAAACGTAATATTCAGAATAGAAAATAGGAGAGAGAGAGGTTTATGGTAATACATACAGCGTAGGCGCCAGTGATGTGGAGCGGCGCGACATTTCTCGAATTTCGAAATATTTAACAAAAATTACGATTTCAAAACTCCAACAGAACTGCTTGGAACAAAAATTGATTAAATAATAAACTTGAAAGTCGGCAAAAATGAGGTGATAAGAATGATAAGAGGAGGGGTGTGCTTTT</canonical>
            <polymorphic>TATTCAAGAATGAAATGTCTGAATTTTCAAAAAAACCCCGCAAACTCAAAATAGATTTTGATTTTTATTTGGTTTCTCTTCAAAATCACGGAGCCCCCTAAAATCAAAAACCAACCGCGGAGCACTCGTAAACTCCATCATCTTTCTCTGGCTGATAATTGGTGATCTCCACGTAGGACGCATCTCTGGAAGAACAAGAAAAACTGGTTGCTGTTTAACTTGTAATTGATCATTCTGTCTTCTTACATTTTCGTTTTGACATATTCTGGTTTAATCACCGTCCCGCCACGCAGCCATCGTAACGATCCGGATTTTCCGCTTGGATGTTCACAACGAATCAACACACTGGATCCCTGCTCCACGCCTATTAGGGTTGTGCCAGCGTGAACACTTTCTGAAAAATTTTTGGAATTTTTTTCTTATCAATATTATTCAAAATGACTCATGTTTTCTATTTTTTTTCCACTTTAAACTTTTTTCAGAGCTCAAAAAAAGCTGGRAAAAAAACAATGAGTCAGACTCACCTTGCAGTCTTAGAATGTGCTCTCCGGCCATTGTGGCACCAAAAATAGTGGAAAGTAAGAAAAGAATTTGAACAATGTTATAAAGTTGTCCAGACATTTTTCTATATGGGTCTGTAATACATATTATTATGTCCAGATGAACAAGAATTGAGGGAGTGTCGTGGGAAGAGGATGGCAACGAAAAAAAAAATAATAAGAAGGACAACTGGTTGCTTGGTATGTGACGGATCGTATAATACCAAAAAACGTAATATTCAGAATAGAAAATAGGAGAGAGAGAGGTTTATGGTAATACATACAGCGTAGGCGCCAGTGATGTGGAGCGGCGCGACATTTCTCGAATTTCGAAATATTTAACAAAAATTACGATTTCAAAACTCCAACAGAACTGCTTGGAACAAAAATTGATTAAATAATAAACTTGAAAGTCGGCAAAAATGAGGTGATAAGAATGATAAGAGGAGGGGTGTGCTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTGAACACTTTCTGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CATATAGAAAAATGTCTGGACAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTGAACACTTTCTGAAAAATTTTTGGAATTTTTTTCTTATCAATATTATTCAAAATGACTCATGTTTTCTATTTTTTTTCCACTTTAAACTTTTTTCAGAGCTCAAAAAAAGCTGGAAAAAAAACAATGAGTCAGACTCACCTTGCAGTCTTAGAATGTGCTCTCCGGCCATTGTGGCACCAAAAATAGTGGAAAGTAAGAAAAGAATTTGAACAATGTTATAAAGTTGTCCAGACATTTTTCTATATG</canonical_amplicon>
		<polymorphic_amplicon>CGTGAACACTTTCTGAAAAATTTTTGGAATTTTTTTCTTATCAATATTATTCAAAATGACTCATGTTTTCTATTTTTTTTCCACTTTAAACTTTTTTCAGAGCTCAAAAAAAGCTGGRAAAAAAACAATGAGTCAGACTCACCTTGCAGTCTTAGAATGTGCTCTCCGGCCATTGTGGCACCAAAAATAGTGGAAAGTAAGAAAAGAATTTGAACAATGTTATAAAGTTGTCCAGACATTTTTCTATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4088</snp_id>
        <super_contig>c001800837.Contig1</super_contig>
        <contig_pos>25691</contig_pos>
        <strand>+</strand>
        <context>AATGTGAATC[A/T]CACGTGAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAAAACACATTTAAACTACTTCTAATCACCGCTTCCAAAATGTGAATC</left_flank>
        <right_flank>CACGTGAAAGCTATAAATGCCAAGACCGGTGTGTGATAATCTACATCAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATATCGCTATGACTAAATTTTCTTTCAATAACTACAGTAATCCACGGCTTGCTGAAAAACAGTTATTTTGAGTTTAAAGATCTGTTGCGAATTACCTAGGTACGTTAAGTATAGTCGCAAAAATGATGGGTAGTACTTAAAAAAACAACTGATAGGATTGAGCAAAAAAGTTAAGAACCCAAAAGTTTTAGGATCAAAAAATCTGGCAACCAAAAAATTCTAAGATCCATAAAATCTAAAAACCAGAATATGTGCTAAGCATCAATATTAACCGGAGAGAGCCAAAAAATCTTAAATTTCAGGGGAATTCCACCTACTAACAAAAGTTTTGGATTCTGGCTTGAAACTTGTCTTATCATATCAGTTCGAAAAAAATGGTTCAAAAAATCAGTTGCACCTAGGCCTAAACAAAAACCGTATACCTATTTTTCTTATCACTATTTCTTTGAAAAAACACATTTAAACTACTTCTAATCACCGCTTCCAAAATGTGAATCACACGTGAAAGCTATAAATGCCAAGACCGGTGTGTGATAATCTACATCAAAAGCCAAATAGTTTTCAAAAATTCTTTGATTTTACTGCGTCACTGTAGACTAGGAATTTTTGCAAGACATCTTTAATGACTTTAATGTAGTTCACTTCTTGGTCCGATCAGGAATTTGCCCTTGTTCTGACATCATTTGCGCCGAATGGACGCATTGTGACCAAGGATTTTGAAACTGGACAGTGACGATGTTAGCGAAAGTTAGAAGATTAGTTCGATGGTTGATTTTTAACATAGAGTGATTAGTATTTCCGCTATCGAAATGTTTTCAACAAGAATAAAACCGAGACATGTTTGGCCTCTGCTTTGGAACTTTTGTTTCAGGTGTTTCGTTTCCTCTGCTTTGGTTAGCACATGCTATTCTGATTCTATCTGCCCATCCACAGTTTCTTTTTATACTACGCTGGTTATCAGTTGCATCACAAAATACAGTAGGAAAATGAGATACCGA</canonical>
            <polymorphic>TCATATCGCTATGACTAAATTTTCTTTCAATAACTACAGTAATCCACGGCTTGCTGAAAAACAGTTATTTTGAGTTTAAAGATCTGTTGCGAATTACCTAGGTACGTTAAGTATAGTCGCAAAAATGATGGGTAGTACTTAAAAAAACAACTGATAGGATTGAGCAAAAAAGTTAAGAACCCAAAAGTTTTAGGATCAAAAAATCTGGCAACCAAAAAATTCTAAGATCCATAAAATCTAAAAACCAGAATATGTGCTAAGCATCAATATTAACCGGAGAGAGCCAAAAAATCTTAAATTTCAGGGGAATTCCACCTACTAACAAAAGTTTTGGATTCTGGCTTGAAACTTGTCTTATCATATCAGTTCGAAAAAAATGGTTCAAAAAATCAGTTGCACCTAGGCCTAAACAAAAACCGTATACCTATTTTTCTTATCACTATTTCTTTGAAAAAACACATTTAAACTACTTCTAATCACCGCTTCCAAAATGTGAATCWCACGTGAAAGCTATAAATGCCAAGACCGGTGTGTGATAATCTACATCAAAAGCCAAATAGTTTTCAAAAATTCTTTGATTTTACTGCGTCACTGTAGACTAGGAATTTTTGCAAGACATCTTTAATGACTTTAATGTAGTTCACTTCTTGGTCCGATCAGGAATTTGCCCTTGTTCTGACATCATTTGCGCCGAATGGACGCATTGTGACCAAGGATTTTGAAACTGGACAGTGACGATGTTAGCGAAAGTTAGAAGATTAGTTCGATGGTTGATTTTTAACATAGAGTGATTAGTATTTCCGCTATCGAAATGTTTTCAACAAGAATAAAACCGAGACATGTTTGGCCTCTGCTTTGGAACTTTTGTTTCAGGTGTTTCGTTTCCTCTGCTTTGGTTAGCACATGCTATTCTGATTCTATCTGCCCATCCACAGTTTCTTTTTATACTACGCTGGTTATCAGTTGCATCACAAAATACAGTAGGAAAATGAGATACCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 338 162</canonical_bands>
                <polymorphic_bands>838 162</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>210 86 84 65 58 56 56 52 46 41 39 30 29 26 26 25 21 19 16 5 4 2 2 2</canonical_bands>
                <polymorphic_bands>210 86 84 65 58 56 56 52 46 41 39 30 29 26 26 25 21 19 16 7 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTAAACAAAAACCGTATACCTA</pcr_primer_p1>
		<pcr_primer_p2>GGACCAAGAAGTGAACTACATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTAAACAAAAACCGTATACCTATTTTTCTTATCACTATTTCTTTGAAAAAACACATTTAAACTACTTCTAATCACCGCTTCCAAAATGTGAATCACACGTGAAAGCTATAAATGCCAAGACCGGTGTGTGATAATCTACATCAAAAGCCAAATAGTTTTCAAAAATTCTTTGATTTTACTGCGTCACTGTAGACTAGGAATTTTTGCAAGACATCTTTAATGACTTTAATGTAGTTCACTTCTTGGTCC</canonical_amplicon>
		<polymorphic_amplicon>CCTAAACAAAAACCGTATACCTATTTTTCTTATCACTATTTCTTTGAAAAAACACATTTAAACTACTTCTAATCACCGCTTCCAAAATGTGAATCWCACGTGAAAGCTATAAATGCCAAGACCGGTGTGTGATAATCTACATCAAAAGCCAAATAGTTTTCAAAAATTCTTTGATTTTACTGCGTCACTGTAGACTAGGAATTTTTGCAAGACATCTTTAATGACTTTAATGTAGTTCACTTCTTGGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4089</snp_id>
        <super_contig>c001800837.Contig1</super_contig>
        <contig_pos>25447</contig_pos>
        <strand>+</strand>
        <context>CAGAATATGT[A/G]CTAAGCATCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGCAACCAAAAAATTCTAAGATCCATAAAATCTAAAAACCAGAATATGT</left_flank>
        <right_flank>CTAAGCATCAATATTAACCGGAGAGAGCCAAAAAATCTTAAATTTCAGGG</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTAGGTCGCAACCTTGTCATAATTCTGTTTAATCGGCTCAAGTAGCGGTCCAGAATCTGACCAAACTCCGACCAGAAGTTGCCAACGACGTTCGAGTACTGACACAGGCTCAGCTAAACTTGAAAACGTTATCATTTGAAAGTTGAGGAACCTAATTGAGAACCTAATTTTTGAAAAATCAGCCCGGAGACTGTTCAATTTGGGAATTTTTGGAAAGTTTCTCAGAAAGTTTTCACTTATGCTCATATCGCTATGACTAAATTTTCTTTCAATAACTACAGTAATCCACGGCTTGCTGAAAAACAGTTATTTTGAGTTTAAAGATCTGTTGCGAATTACCTAGGTACGTTAAGTATAGTCGCAAAAATGATGGGTAGTACTTAAAAAAACAACTGATAGGATTGAGCAAAAAAGTTAAGAACCCAAAAGTTTTAGGATCAAAAAATCTGGCAACCAAAAAATTCTAAGATCCATAAAATCTAAAAACCAGAATATGTGCTAAGCATCAATATTAACCGGAGAGAGCCAAAAAATCTTAAATTTCAGGGGAATTCCACCTACTAACAAAAGTTTTGGATTCTGGCTTGAAACTTGTCTTATCATATCAGTTCGAAAAAAATGGTTCAAAAAATCAGTTGCACCTAGGCCTAAACAAAAACCGTATACCTATTTTTCTTATCACTATTTCTTTGAAAAAACACATTTAAACTACTTCTAATCACCGCTTCCAAAATGTGAATCACACGTGAAAGCTATAAATGCCAAGACCGGTGTGTGATAATCTACATCAAAAGCCAAATAGTTTTCAAAAATTCTTTGATTTTACTGCGTCACTGTAGACTAGGAATTTTTGCAAGACATCTTTAATGACTTTAATGTAGTTCACTTCTTGGTCCGATCAGGAATTTGCCCTTGTTCTGACATCATTTGCGCCGAATGGACGCATTGTGACCAAGGATTTTGAAACTGGACAGTGACGATGTTAGCGAAAGTTAGAA</canonical>
            <polymorphic>TACTAGGTCGCAACCTTGTCATAATTCTGTTTAATCGGCTCAAGTAGCGGTCCAGAATCTGACCAAACTCCGACCAGAAGTTGCCAACGACGTTCGAGTACTGACACAGGCTCAGCTAAACTTGAAAACGTTATCATTTGAAAGTTGAGGAACCTAATTGAGAACCTAATTTTTGAAAAATCAGCCCGGAGACTGTTCAATTTGGGAATTTTTGGAAAGTTTCTCAGAAAGTTTTCACTTATGCTCATATCGCTATGACTAAATTTTCTTTCAATAACTACAGTAATCCACGGCTTGCTGAAAAACAGTTATTTTGAGTTTAAAGATCTGTTGCGAATTACCTAGGTACGTTAAGTATAGTCGCAAAAATGATGGGTAGTACTTAAAAAAACAACTGATAGGATTGAGCAAAAAAGTTAAGAACCCAAAAGTTTTAGGATCAAAAAATCTGGCAACCAAAAAATTCTAAGATCCATAAAATCTAAAAACCAGAATATGTRCTAAGCATCAATATTAACCGGAGAGAGCCAAAAAATCTTAAATTTCAGGGGAATTCCACCTACTAACAAAAGTTTTGGATTCTGGCTTGAAACTTGTCTTATCATATCAGTTCGAAAAAAATGGTTCAAAAAATCAGTTGCACCTAGGCCTAAACAAAAACCGTATACCTATTTTTCTTATCACTATTTCTTTGAAAAAACACATTTAAACTACTTCTAATCACCGCTTCCAAAATGTGAATCACACGTGAAAGCTATAAATGCCAAGACCGGTGTGTGATAATCTACATCAAAAGCCAAATAGTTTTCAAAAATTCTTTGATTTTACTGCGTCACTGTAGACTAGGAATTTTTGCAAGACATCTTTAATGACTTTAATGTAGTTCACTTCTTGGTCCGATCAGGAATTTGCCCTTGTTCTGACATCATTTGCGCCGAATGGACGCATTGTGACCAAGGATTTTGAAACTGGACAGTGACGATGTTAGCGAAAGTTAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCTNAGC</site>
                <isoschizomers>
                    <enzyme>BlpI</enzyme>
                    <enzyme>Bpu1102I</enzyme>
                    <enzyme>Bsp1720I</enzyme>
                    <enzyme>CelII</enzyme>
                    <enzyme>EspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 390 111</canonical_bands>
                <polymorphic_bands>889 111</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>210 131 106 84 65 58 56 53 52 41 26 25 22 21 19 16 5 4 2 2 2</canonical_bands>
                <polymorphic_bands>268 131 106 84 65 56 53 52 41 26 25 22 21 19 16 5 4 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGTTAAGAACCCAAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTGTTTAGGCCTAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGTTAAGAACCCAAAAGTTTTAGGATCAAAAAATCTGGCAACCAAAAAATTCTAAGATCCATAAAATCTAAAAACCAGAATATGTGCTAAGCATCAATATTAACCGGAGAGAGCCAAAAAATCTTAAATTTCAGGGGAATTCCACCTACTAACAAAAGTTTTGGATTCTGGCTTGAAACTTGTCTTATCATATCAGTTCGAAAAAAATGGTTCAAAAAATCAGTTGCACCTAGGCCTAAACAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGTTAAGAACCCAAAAGTTTTAGGATCAAAAAATCTGGCAACCAAAAAATTCTAAGATCCATAAAATCTAAAAACCAGAATATGTRCTAAGCATCAATATTAACCGGAGAGAGCCAAAAAATCTTAAATTTCAGGGGAATTCCACCTACTAACAAAAGTTTTGGATTCTGGCTTGAAACTTGTCTTATCATATCAGTTCGAAAAAAATGGTTCAAAAAATCAGTTGCACCTAGGCCTAAACAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4148</snp_id>
        <super_contig>c001800837.Contig1</super_contig>
        <contig_pos>128284</contig_pos>
        <strand></strand>
        <context>ATATTTTAAC[G/T]TTTTTATTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTTTTTGTATTTCTCATAGTTGTTTTTGTCTTGTAAATATATTTTAAC</left_flank>
        <right_flank>TTTTTATTAACAAGTTTTTTCCTGATTCCTTCTTTTTTTGTGATCACAAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGTATTCATAAACTTATGACATATTTTGAGGAGAATGCTGCGCCTTAGCTTCCTGCCCTAAAACTGGTCAACCTGTGTGTGATTCTCAAGGAAGAACTCACGACTCCTTATGTCATTTCCACAATTCCAAGTGTATTTTTGACAAGATCCACACACAAAACACTACGCTGACTTTGGATTATCAAGGTAACAAGACCCAAAATATTTTATCCAACAAAAACTAGACGTTTTCAGGTAAATGCTGCCCTGCTGGATGCACTGACGAGCTGTCTGTCATTTGTGACCAACACGAGAACATCTACCGTAACTCTTGCTATTTCAACCTGAAAGCTTGTGAAACGTGGAGACGAACACAAGATGTGCTATTAGCTACACCCTGCCCGCTATTACGAACCTAAACAGATTCTCATATGTATAATTTAAAACGTTTTTCTTTTTGTTTTGAGATTTTTTTTTGTATTTCTCATAGTTGTTTTTGTCTTGTAAATATATTTTAACGTTTTTATTAACAAGTTTTTTCCTGATTCCTTCTTTTTTTGTGATCACAAGTTAGATGTTGTTGGTACCGTTAGCTCTATTTCTTCGTGTCTTGGACTCGAACTCCTCGATTTTACATCAAGCACTGCCAATTTCGATTCCACCTCATGTAGCCGCATGCCCAACACTCTAAAAATAATCTGTTTGATGTTATATGATGAAAAAGAACGACTTGTTAGCTCGTCGCGAGTGTGCCAACGCCATTTGCTTATCATTGCACAAATCGAGCAGAATGGTTGTAATGGCTCGATGGTCAGACTCGTCCAACTCGATTGCATGGGAGGTTAGCAGTTCGCGGACTGCAAAAAATTTTAAAATTGACAAAAATAACTGGAAGAACAATTTCCATTACTTTGTTTCATATTGATTACTGCGACACTCGGTTTTTCATCTCCTTCCCCTGCCTTTGGAGATCTGTTCAATGACTGAAACAGTGAATTTCAAGAACAAGGAGTCATGAAA</canonical>
            <polymorphic>CGGTATTCATAAACTTATGACATATTTTGAGGAGAATGCTGCGCCTTAGCTTCCTGCCCTAAAACTGGTCAACCTGTGTGTGATTCTCAAGGAAGAACTCACGACTCCTTATGTCATTTCCACAATTCCAAGTGTATTTTTGACAAGATCCACACACAAAACACTACGCTGACTTTGGATTATCAAGGTAACAAGACCCAAAATATTTTATCCAACAAAAACTAGACGTTTTCAGGTAAATGCTGCCCTGCTGGATGCACTGACGAGCTGTCTGTCATTTGTGACCAACACGAGAACATCTACCGTAACTCTTGCTATTTCAACCTGAAAGCTTGTGAAACGTGGAGACGAACACAAGATGTGCTATTAGCTACACCCTGCCCGCTATTACGAACCTAAACAGATTCTCATATGTATAATTTAAAACGTTTTTCTTTTTGTTTTGAGATTTTTTTTTGTATTTCTCATAGTTGTTTTTGTCTTGTAAATATATTTTAACKTTTTTATTAACAAGTTTTTTCCTGATTCCTTCTTTTTTTGTGATCACAAGTTAGATGTTGTTGGTACCGTTAGCTCTATTTCTTCGTGTCTTGGACTCGAACTCCTCGATTTTACATCAAGCACTGCCAATTTCGATTCCACCTCATGTAGCCGCATGCCCAACACTCTAAAAATAATCTGTTTGATGTTATATGATGAAAAAGAACGACTTGTTAGCTCGTCGCGAGTGTGCCAACGCCATTTGCTTATCATTGCACAAATCGAGCAGAATGGTTGTAATGGCTCGATGGTCAGACTCGTCCAACTCGATTGCATGGGAGGTTAGCAGTTCGCGGACTGCAAAAAATTTTAAAATTGACAAAAATAACTGGAAGAACAATTTCCATTACTTTGTTTCATATTGATTACTGCGACACTCGGTTTTTCATCTCCTTCCCCTGCCTTTGGAGATCTGTTCAATGACTGAAACAGTGAATTTCAAGAACAAGGAGTCATGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>502 426 72</canonical_bands>
                <polymorphic_bands>574 426</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>502 226 114 86 72</canonical_bands>
                <polymorphic_bands>574 226 114 86</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGAACACAAGATGTGCTATTA</pcr_primer_p1>
		<pcr_primer_p2>AAGACACGAAGAAATAGAGCTAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACGAACACAAGATGTGCTATTAGCTACACCCTGCCCGCTATTACGAACCTAAACAGATTCTCATATGTATAATTTAAAACGTTTTTCTTTTTGTTTTGAGATTTTTTTTTGTATTTCTCATAGTTGTTTTTGTCTTGTAAATATATTTTAACGTTTTTATTAACAAGTTTTTTCCTGATTCCTTCTTTTTTTGTGATCACAAGTTAGATGTTGTTGGTACCGTTAGCTCTATTTCTTCGTGTCTT</canonical_amplicon>
		<polymorphic_amplicon>ACGAACACAAGATGTGCTATTAGCTACACCCTGCCCGCTATTACGAACCTAAACAGATTCTCATATGTATAATTTAAAACGTTTTTCTTTTTGTTTTGAGATTTTTTTTTGTATTTCTCATAGTTGTTTTTGTCTTGTAAATATATTTTAACKTTTTTATTAACAAGTTTTTTCCTGATTCCTTCTTTTTTTGTGATCACAAGTTAGATGTTGTTGGTACCGTTAGCTCTATTTCTTCGTGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4149</snp_id>
        <super_contig>c001800837.Contig1</super_contig>
        <contig_pos>129757</contig_pos>
        <strand>+</strand>
        <context>TTTGARAGAC[A/T]GGTCCGAACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTCATAAGCTCCAAGCATCGCAGTTTCTTCGTCATCATTTGAAAGAC</left_flank>
        <right_flank>GGTCCGAACCATACCGCCCATTTTTTCAACCTGAAATTTGTTTTAGAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCGGTTTTTAGCTATTTTGAACTTTTTTCAAGAGTCTGGAGCTCAGCATTCAAGCTATCAAAAACTTTGGAAATTTTGGGAGGTGTAAAACTAGATTGCAAAATTTTCATTCGCAAAAATTTTCGAAAATGCTTAGTTTCTCAGCTATCTGCAGATTGTCGAAAGAAATCTTTTTTTTTTCATTTTTCCAGTACAAATACGAGACAGAAAAAGGTGTGTCTCAGAAATCGGCAAATAGCTGTAAAACTAGAGATATCCAAAATATTTTGAAAATACTAATTTTTCAATCTAGGGCTATTTTACACTCTCCAAAATATTTAAAATGATCGGAAACTTGACAGCCTTGCTCCAGACTCCTGAAAATGCTCAAAGTAACCGAAATTCATGAGAAAACTCGTTTTTGTATGTTATTGTACGAAATAATGTAAGACATACCTTCGTTTGCAGTTTTTCATAAGCTCCAAGCATCGCAGTTTCTTCGTCATCATTTGAAAGACAGGTCCGAACCATACCGCCCATTTTTTCAACCTGAAATTTGTTTTAGAAAATTGACTTCAATTATTTAAGCTACTGAAATATTCTGGACAGAAAGAAGCGTAAAAAAGGAACATTCTTACCAAAATAAAAAAAAATGTTTTACGAGAAAATGTCTGGAATAGGGGATTTCATCCAGTTTCAAGTGTAAAAACAACTTTTATGTTTGAAAACGTCTAGAAATTGAGAAAAAGTCATTTTTGAAAATTAATTTTTTTAAAGCGCAATTTTGGTACTGTAACCAGCTTCTAAAATGTTCAGAAATGTCTAGATAGGCCATTTTCATTTTATCCGGAACTTTTGATTGTAATCGGGGAGAACAAAGTGTTGCGGTTCCCATGTAGAGCCATTTTTATACTTCAAATTACTTTTGAAGAAAAAAACCTTCTTTTGAGAAGAACCCTGCCAGTGTTTTCATTTTTCCTTCCTAGTGTATTTTTCACCAATTTTCTAGTACCTTTCAA</canonical>
            <polymorphic>AGTCGGTTTTTAGCTATTTTGAACTTTTTTCAAGAGTCTGGAGCTCAGCATTCAAGCTATCAAAAACTTTGGAAATTTTGGGAGGTGTAAAACTAGATTGCAAAATTTTCATTCGCAAAAATTTTCGAAAATGCTTAGTTTCTCAGCTATCTGCAGATTGTCGAAAGAAATCTTTTTTTTTTCATTTTTCCAGTACAAATACGAGACAGAAAAAGGTGTGTCTCAGAAATCGGCAAATAGCTGTAAAACTAGAGATATCCAAAATATTTTGAAAATACTAATTTTTCAATCTAGGGCTATTTTACACTCTCCAAAATATTTAAAATGATCGGAAACTTGACAGCCTTGCTCCAGACTCCTGAAAATGCTCAAAGTAACCGAAATTCATGAGAAAACTCGTTTTTGTATGTTATTGTACGAAATAATGTAAGACATACCTTCGTTTGCAGTTTTTCATAAGCTCCAAGCATCGCAGTTTCTTCGTCATCATTTGAAAGACWGGTCCGAACCATACCGCCCATTTTTTCAACCTGAAATTTGTTTTAGAAAATTGACTTCAATTATTTAAGCTACTGAAATATTCTGGACAGAAAGAAGCGTAAAAAAGGAACATTCTTACCAAAATAAAAAAAAATGTTTTACGAGAAAATGTCTGGAATAGGGGATTTCATCCAGTTTCAAGTGTAAAAACAACTTTTATGTTTGAAAACGTCTAGAAATTGAGAAAAAGTCATTTTTGAAAATTAATTTTTTTAAAGCGCAATTTTGGTACTGTAACCAGCTTCTAAAATGTTCAGAAATGTCTAGATAGGCCATTTTCATTTTATCCGGAACTTTTGATTGTAATCGGGGAGAACAAAGTGTTGCGGTTCCCATGTAGAGCCATTTTTATACTTCAAATTACTTTTGAAGAAAAAAACCTTCTTTTGAGAAGAACCCTGCCAGTGTTTTCATTTTTCCTTCCTAGTGTATTTTTCACCAATTTTCTAGTACCTTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTAAGACATACCTTCGTTTG</pcr_primer_p1>
		<pcr_primer_p2>TTCTTTCTGTCCAGAATATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>173</pcr_amplicon_size>
		<canonical_amplicon>AATGTAAGACATACCTTCGTTTGCAGTTTTTCATAAGCTCCAAGCATCGCAGTTTCTTCGTCATCATTTGAAAGACAGGTCCGAACCATACCGCCCATTTTTTCAACCTGAAATTTGTTTTAGAAAATTGACTTCAATTATTTAAGCTACTGAAATATTCTGGACAGAAAGAA</canonical_amplicon>
		<polymorphic_amplicon>AATGTAAGACATACCTTCGTTTGCAGTTTTTCATAAGCTCCAAGCATCGCAGTTTCTTCGTCATCATTTGAAAGACWGGTCCGAACCATACCGCCCATTTTTTCAACCTGAAATTTGTTTTAGAAAATTGACTTCAATTATTTAAGCTACTGAAATATTCTGGACAGAAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4150</snp_id>
        <super_contig>c001800837.Contig1</super_contig>
        <contig_pos>129752</contig_pos>
        <strand>+</strand>
        <context>CATCATTTGA[A/G]AGACWGGTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCAGTTTTTCATAAGCTCCAAGCATCGCAGTTTCTTCGTCATCATTTGA</left_flank>
        <right_flank>AGACAGGTCCGAACCATACCGCCCATTTTTTCAACCTGAAATTTGTTTTA</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCAGTCGGTTTTTAGCTATTTTGAACTTTTTTCAAGAGTCTGGAGCTCAGCATTCAAGCTATCAAAAACTTTGGAAATTTTGGGAGGTGTAAAACTAGATTGCAAAATTTTCATTCGCAAAAATTTTCGAAAATGCTTAGTTTCTCAGCTATCTGCAGATTGTCGAAAGAAATCTTTTTTTTTTCATTTTTCCAGTACAAATACGAGACAGAAAAAGGTGTGTCTCAGAAATCGGCAAATAGCTGTAAAACTAGAGATATCCAAAATATTTTGAAAATACTAATTTTTCAATCTAGGGCTATTTTACACTCTCCAAAATATTTAAAATGATCGGAAACTTGACAGCCTTGCTCCAGACTCCTGAAAATGCTCAAAGTAACCGAAATTCATGAGAAAACTCGTTTTTGTATGTTATTGTACGAAATAATGTAAGACATACCTTCGTTTGCAGTTTTTCATAAGCTCCAAGCATCGCAGTTTCTTCGTCATCATTTGAAAGACAGGTCCGAACCATACCGCCCATTTTTTCAACCTGAAATTTGTTTTAGAAAATTGACTTCAATTATTTAAGCTACTGAAATATTCTGGACAGAAAGAAGCGTAAAAAAGGAACATTCTTACCAAAATAAAAAAAAATGTTTTACGAGAAAATGTCTGGAATAGGGGATTTCATCCAGTTTCAAGTGTAAAAACAACTTTTATGTTTGAAAACGTCTAGAAATTGAGAAAAAGTCATTTTTGAAAATTAATTTTTTTAAAGCGCAATTTTGGTACTGTAACCAGCTTCTAAAATGTTCAGAAATGTCTAGATAGGCCATTTTCATTTTATCCGGAACTTTTGATTGTAATCGGGGAGAACAAAGTGTTGCGGTTCCCATGTAGAGCCATTTTTATACTTCAAATTACTTTTGAAGAAAAAAACCTTCTTTTGAGAAGAACCCTGCCAGTGTTTTCATTTTTCCTTCCTAGTGTATTTTTCACCAATTTTCTAGTACCT</canonical>
            <polymorphic>TTTTCAGTCGGTTTTTAGCTATTTTGAACTTTTTTCAAGAGTCTGGAGCTCAGCATTCAAGCTATCAAAAACTTTGGAAATTTTGGGAGGTGTAAAACTAGATTGCAAAATTTTCATTCGCAAAAATTTTCGAAAATGCTTAGTTTCTCAGCTATCTGCAGATTGTCGAAAGAAATCTTTTTTTTTTCATTTTTCCAGTACAAATACGAGACAGAAAAAGGTGTGTCTCAGAAATCGGCAAATAGCTGTAAAACTAGAGATATCCAAAATATTTTGAAAATACTAATTTTTCAATCTAGGGCTATTTTACACTCTCCAAAATATTTAAAATGATCGGAAACTTGACAGCCTTGCTCCAGACTCCTGAAAATGCTCAAAGTAACCGAAATTCATGAGAAAACTCGTTTTTGTATGTTATTGTACGAAATAATGTAAGACATACCTTCGTTTGCAGTTTTTCATAAGCTCCAAGCATCGCAGTTTCTTCGTCATCATTTGARAGACAGGTCCGAACCATACCGCCCATTTTTTCAACCTGAAATTTGTTTTAGAAAATTGACTTCAATTATTTAAGCTACTGAAATATTCTGGACAGAAAGAAGCGTAAAAAAGGAACATTCTTACCAAAATAAAAAAAAATGTTTTACGAGAAAATGTCTGGAATAGGGGATTTCATCCAGTTTCAAGTGTAAAAACAACTTTTATGTTTGAAAACGTCTAGAAATTGAGAAAAAGTCATTTTTGAAAATTAATTTTTTTAAAGCGCAATTTTGGTACTGTAACCAGCTTCTAAAATGTTCAGAAATGTCTAGATAGGCCATTTTCATTTTATCCGGAACTTTTGATTGTAATCGGGGAGAACAAAGTGTTGCGGTTCCCATGTAGAGCCATTTTTATACTTCAAATTACTTTTGAAGAAAAAAACCTTCTTTTGAGAAGAACCCTGCCAGTGTTTTCATTTTTCCTTCCTAGTGTATTTTTCACCAATTTTCTAGTACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTAAGACATACCTTCGTTTG</pcr_primer_p1>
		<pcr_primer_p2>TTCTTTCTGTCCAGAATATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>173</pcr_amplicon_size>
		<canonical_amplicon>AATGTAAGACATACCTTCGTTTGCAGTTTTTCATAAGCTCCAAGCATCGCAGTTTCTTCGTCATCATTTGAAAGACAGGTCCGAACCATACCGCCCATTTTTTCAACCTGAAATTTGTTTTAGAAAATTGACTTCAATTATTTAAGCTACTGAAATATTCTGGACAGAAAGAA</canonical_amplicon>
		<polymorphic_amplicon>AATGTAAGACATACCTTCGTTTGCAGTTTTTCATAAGCTCCAAGCATCGCAGTTTCTTCGTCATCATTTGARAGACAGGTCCGAACCATACCGCCCATTTTTTCAACCTGAAATTTGTTTTAGAAAATTGACTTCAATTATTTAAGCTACTGAAATATTCTGGACAGAAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4151</snp_id>
        <super_contig>c001800837.Contig1</super_contig>
        <contig_pos>131104</contig_pos>
        <strand>+</strand>
        <context>TAACAATTTT[C/T]TTCAAATTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGCTTGAATTTGTGTTCGTAAATGTTGAGGTTTTTAAAATAACAATTTT</left_flank>
        <right_flank>TTCAAATTTAATGCACGAAATTCAGAGTTTTCTATTTTTCTTTGCCCGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTACGGCACATAGCAATCCCAACTCCTTCTCTGTCCTTTCCAAATTCCGTTCCAATGTCTCCACTCTCGCCACGTATCCTTTTTTTTCATTCTCCGATTTCTCCAGGTCTTGTCCGAGACGAACGATGGTGTCGGTTTTCGCGTTGCATTTTTGTTGGAGTGCAGCCAGCTGGAATGAAAGAATTTTCAGAAGAAAATAAGGAATACAACTCACTTGTCGTTTCAATTCCAGAACTTCTTCTTTTTCGTCCTTCATTTGGGATGAAGACACCGCGTGGTGCGTATTAGCATGGGCTCATGAGGAGAAAAGAAGGGAAAATCGATAGTGGAGGGACGCAAGAGGACCCACTGCGCGCACTTCCCCCCGTCTAACCCTCCAAAATAGCTCCCAAAAAGGGGAAATGGATCACGCAAGATAGAGAACGTCAATTTCCGGTTTTTTATGTGTTTTGCTTGAATTTGTGTTCGTAAATGTTGAGGTTTTTAAAATAACAATTTTTTTCAAATTTAATGCACGAAATTCAGAGTTTTCTATTTTTCTTTGCCCGGAAAAGCTGAACATTTCATGAGAAAAATAATTTATTTCGAAAAAATCGCAAAAAAAATTACGGACTCACTCATACACAAAAACGATTAAAATTACAATAAAATATTCCCAACTATCCCAATTTAAGTACAAAAACTACATGGATTAAAAATCAGATAATAAAAAAACAGACAAAAAAGAAGAGTACCAATAAGAAAATTAGTGAATGTAAGCATATGGAGAAGAAGCGTATTCCGGAAGATGAGCTGGTCCATAATTTTCGAAAAGTTTGCGCATATCGGCGACATGAATCAAGTCGGTGTGCTCGCCTTCGTAGTGATCATGAACGTTTTCTTGAGTGAGAGTGGCATTGCGGGATCTCTGAAATAATTTTTTAAAAAATTAAATTTTGAACTTCAAAAATGAGAATATTGGTTACCGGAGCTGGACACACGACATTTCCACCGACAATAA</canonical>
            <polymorphic>TTACGGCACATAGCAATCCCAACTCCTTCTCTGTCCTTTCCAAATTCCGTTCCAATGTCTCCACTCTCGCCACGTATCCTTTTTTTTCATTCTCCGATTTCTCCAGGTCTTGTCCGAGACGAACGATGGTGTCGGTTTTCGCGTTGCATTTTTGTTGGAGTGCAGCCAGCTGGAATGAAAGAATTTTCAGAAGAAAATAAGGAATACAACTCACTTGTCGTTTCAATTCCAGAACTTCTTCTTTTTCGTCCTTCATTTGGGATGAAGACACCGCGTGGTGCGTATTAGCATGGGCTCATGAGGAGAAAAGAAGGGAAAATCGATAGTGGAGGGACGCAAGAGGACCCACTGCGCGCACTTCCCCCCGTCTAACCCTCCAAAATAGCTCCCAAAAAGGGGAAATGGATCACGCAAGATAGAGAACGTCAATTTCCGGTTTTTTATGTGTTTTGCTTGAATTTGTGTTCGTAAATGTTGAGGTTTTTAAAATAACAATTTTYTTCAAATTTAATGCACGAAATTCAGAGTTTTCTATTTTTCTTTGCCCGGAAAAGCTGAACATTTCATGAGAAAAATAATTTATTTCGAAAAAATCGCAAAAAAAATTACGGACTCACTCATACACAAAAACGATTAAAATTACAATAAAATATTCCCAACTATCCCAATTTAAGTACAAAAACTACATGGATTAAAAATCAGATAATAAAAAAACAGACAAAAAAGAAGAGTACCAATAAGAAAATTAGTGAATGTAAGCATATGGAGAAGAAGCGTATTCCGGAAGATGAGCTGGTCCATAATTTTCGAAAAGTTTGCGCATATCGGCGACATGAATCAAGTCGGTGTGCTCGCCTTCGTAGTGATCATGAACGTTTTCTTGAGTGAGAGTGGCATTGCGGGATCTCTGAAATAATTTTTTAAAAAATTAAATTTTGAACTTCAAAAATGAGAATATTGGTTACCGGAGCTGGACACACGACATTTCCACCGACAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTATGTGTTTTGCTTGAATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTACTTAAATTGGGATAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTTATGTGTTTTGCTTGAATTTGTGTTCGTAAATGTTGAGGTTTTTAAAATAACAATTTTTTTCAAATTTAATGCACGAAATTCAGAGTTTTCTATTTTTCTTTGCCCGGAAAAGCTGAACATTTCATGAGAAAAATAATTTATTTCGAAAAAATCGCAAAAAAAATTACGGACTCACTCATACACAAAAACGATTAAAATTACAATAAAATATTCCCAACTATCCCAATTTAAGTACAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTATGTGTTTTGCTTGAATTTGTGTTCGTAAATGTTGAGGTTTTTAAAATAACAATTTTYTTCAAATTTAATGCACGAAATTCAGAGTTTTCTATTTTTCTTTGCCCGGAAAAGCTGAACATTTCATGAGAAAAATAATTTATTTCGAAAAAATCGCAAAAAAAATTACGGACTCACTCATACACAAAAACGATTAAAATTACAATAAAATATTCCCAACTATCCCAATTTAAGTACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4152</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>6016</contig_pos>
        <strand>+</strand>
        <context>TTTGGACTAC[C/T]ATAGTAGAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAAATTACCAATACGTTTTGATTAAGTTTCAGAAAATATTTGGACTAC</left_flank>
        <right_flank>ATAGTAGAACCACAAAAGCTTATTTATACAATAATTTTACAAAATAATGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGCGCTTTTTCTGATAGAGTACAGGCTCAGTAGCTACCCTTTCAGCCTTCAATTCGAGACCAACGATTTTTTACTACGGTATATGAATATTAGCGTCCGAGCGCATTTATACGACGTCCTGAAAAAACAGTAAATGGAAAAAACCGTGCCGAAGAAAAATGAATTATATTTTAAAAACCGTGTAAACAGAAGTTTGAGGTGCTTGCCGTATTTCCTCTAATCCACTTAAACTATCAACTTTGAGCCTAATTATCTCCATTCCTGTAAACGATATCAAAATGTTGTCAACTGATAAAATACTTTTGAAACTATGATAAATATTTTGTTAGTTGATTACTTTCTGATATCTTTTGTAGGAATTGAGATGTCTGAACTTAAAGTTGACAGTCCCGGTGAGCTTATGAATATTAGAGAAAATAGGTAAATAACGTTTTATCATTCAACATGCTTAAAATTACCAATACGTTTTGATTAAGTTTCAGAAAATATTTGGACTACTATAGTAGAACCACAAAAGCTTATTTATACAATAATTTTACAAAATAATGTAGTACAAATTAAAAATTAAATTTAGTACGAAATTTTTAGTGTTACAAAAAATCTAAATAAAAATGATCGGATCAAGGAGTTGATCCTTTTCGGAGTCATTCTCATGAAACAGTCCAGAAACTGAATACTTTTCGTTGAAGACACCAATTTGATCGAAACCAAACCATCCGGCGAATGGATTTGAAGGTTTTGTGGTTTTCGGAAGGAACCCTTTGGATTCTCCAAACTTTTGAAGGTTCTGTGTGTAGGTGCTATGCCAGTATCTGAAATAGTTGTATTCTCATAAAAGTTAGATTTCTTAATTCCAAGTACCTCTCAAAAACTGCCTTGACTTGTCTGTTAATATCACCATGGAAGGGTTCTTCGTCTACAACAACAGCTGTTCCAGTCGATTTATAAAAGTATTCTGGTGCATAATTCGATGATCCAATAATGGTTCTTTTCTCAGAA</canonical>
            <polymorphic>TCGCGCTTTTTCTGATAGAGTACAGGCTCAGTAGCTACCCTTTCAGCCTTCAATTCGAGACCAACGATTTTTTACTACGGTATATGAATATTAGCGTCCGAGCGCATTTATACGACGTCCTGAAAAAACAGTAAATGGAAAAAACCGTGCCGAAGAAAAATGAATTATATTTTAAAAACCGTGTAAACAGAAGTTTGAGGTGCTTGCCGTATTTCCTCTAATCCACTTAAACTATCAACTTTGAGCCTAATTATCTCCATTCCTGTAAACGATATCAAAATGTTGTCAACTGATAAAATACTTTTGAAACTATGATAAATATTTTGTTAGTTGATTACTTTCTGATATCTTTTGTAGGAATTGAGATGTCTGAACTTAAAGTTGACAGTCCCGGTGAGCTTATGAATATTAGAGAAAATAGGTAAATAACGTTTTATCATTCAACATGCTTAAAATTACCAATACGTTTTGATTAAGTTTCAGAAAATATTTGGACTACYATAGTAGAACCACAAAAGCTTATTTATACAATAATTTTACAAAATAATGTAGTACAAATTAAAAATTAAATTTAGTACGAAATTTTTAGTGTTACAAAAAATCTAAATAAAAATGATCGGATCAAGGAGTTGATCCTTTTCGGAGTCATTCTCATGAAACAGTCCAGAAACTGAATACTTTTCGTTGAAGACACCAATTTGATCGAAACCAAACCATCCGGCGAATGGATTTGAAGGTTTTGTGGTTTTCGGAAGGAACCCTTTGGATTCTCCAAACTTTTGAAGGTTCTGTGTGTAGGTGCTATGCCAGTATCTGAAATAGTTGTATTCTCATAAAAGTTAGATTTCTTAATTCCAAGTACCTCTCAAAAACTGCCTTGACTTGTCTGTTAATATCACCATGGAAGGGTTCTTCGTCTACAACAACAGCTGTTCCAGTCGATTTATAAAAGTATTCTGGTGCATAATTCGATGATCCAATAATGGTTCTTTTCTCAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCAACATGCTTAAAATTACCA</pcr_primer_p1>
		<pcr_primer_p2>TCAACGAAAAGTATTCAGTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCAACATGCTTAAAATTACCAATACGTTTTGATTAAGTTTCAGAAAATATTTGGACTACTATAGTAGAACCACAAAAGCTTATTTATACAATAATTTTACAAAATAATGTAGTACAAATTAAAAATTAAATTTAGTACGAAATTTTTAGTGTTACAAAAAATCTAAATAAAAATGATCGGATCAAGGAGTTGATCCTTTTCGGAGTCATTCTCATGAAACAGTCCAGAAACTGAATACTTTTCGTTGA</canonical_amplicon>
		<polymorphic_amplicon>ATTCAACATGCTTAAAATTACCAATACGTTTTGATTAAGTTTCAGAAAATATTTGGACTACYATAGTAGAACCACAAAAGCTTATTTATACAATAATTTTACAAAATAATGTAGTACAAATTAAAAATTAAATTTAGTACGAAATTTTTAGTGTTACAAAAAATCTAAATAAAAATGATCGGATCAAGGAGTTGATCCTTTTCGGAGTCATTCTCATGAAACAGTCCAGAAACTGAATACTTTTCGTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4153</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>6158</contig_pos>
        <strand>+</strand>
        <context>GATCCTTTTC[A/G]GAGTCATTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTACAAAAAATCTAAATAAAAATGATCGGATCAAGGAGTTGATCCTTTTC</left_flank>
        <right_flank>GAGTCATTCTCATGAAACAGTCCAGAAACTGAATACTTTTCGTTGAAGAC</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCGTGCCGAAGAAAAATGAATTATATTTTAAAAACCGTGTAAACAGAAGTTTGAGGTGCTTGCCGTATTTCCTCTAATCCACTTAAACTATCAACTTTGAGCCTAATTATCTCCATTCCTGTAAACGATATCAAAATGTTGTCAACTGATAAAATACTTTTGAAACTATGATAAATATTTTGTTAGTTGATTACTTTCTGATATCTTTTGTAGGAATTGAGATGTCTGAACTTAAAGTTGACAGTCCCGGTGAGCTTATGAATATTAGAGAAAATAGGTAAATAACGTTTTATCATTCAACATGCTTAAAATTACCAATACGTTTTGATTAAGTTTCAGAAAATATTTGGACTACTATAGTAGAACCACAAAAGCTTATTTATACAATAATTTTACAAAATAATGTAGTACAAATTAAAAATTAAATTTAGTACGAAATTTTTAGTGTTACAAAAAATCTAAATAAAAATGATCGGATCAAGGAGTTGATCCTTTTCGGAGTCATTCTCATGAAACAGTCCAGAAACTGAATACTTTTCGTTGAAGACACCAATTTGATCGAAACCAAACCATCCGGCGAATGGATTTGAAGGTTTTGTGGTTTTCGGAAGGAACCCTTTGGATTCTCCAAACTTTTGAAGGTTCTGTGTGTAGGTGCTATGCCAGTATCTGAAATAGTTGTATTCTCATAAAAGTTAGATTTCTTAATTCCAAGTACCTCTCAAAAACTGCCTTGACTTGTCTGTTAATATCACCATGGAAGGGTTCTTCGTCTACAACAACAGCTGTTCCAGTCGATTTATAAAAGTATTCTGGTGCATAATTCGATGATCCAATAATGGTTCTTTTCTCAGAAAGTATGAATTTCGCATGCATTTTACGATCCTTGTATGATTCTTGTGCAGTTTGAGGGATTAGAACGAACTTCTGCAAATAGAATAAATTGGAATCGAAAAATTTAAAACGCTTACTATTTGAATGAACCGATTTTCCGATGG</canonical>
            <polymorphic>AACCGTGCCGAAGAAAAATGAATTATATTTTAAAAACCGTGTAAACAGAAGTTTGAGGTGCTTGCCGTATTTCCTCTAATCCACTTAAACTATCAACTTTGAGCCTAATTATCTCCATTCCTGTAAACGATATCAAAATGTTGTCAACTGATAAAATACTTTTGAAACTATGATAAATATTTTGTTAGTTGATTACTTTCTGATATCTTTTGTAGGAATTGAGATGTCTGAACTTAAAGTTGACAGTCCCGGTGAGCTTATGAATATTAGAGAAAATAGGTAAATAACGTTTTATCATTCAACATGCTTAAAATTACCAATACGTTTTGATTAAGTTTCAGAAAATATTTGGACTACTATAGTAGAACCACAAAAGCTTATTTATACAATAATTTTACAAAATAATGTAGTACAAATTAAAAATTAAATTTAGTACGAAATTTTTAGTGTTACAAAAAATCTAAATAAAAATGATCGGATCAAGGAGTTGATCCTTTTCRGAGTCATTCTCATGAAACAGTCCAGAAACTGAATACTTTTCGTTGAAGACACCAATTTGATCGAAACCAAACCATCCGGCGAATGGATTTGAAGGTTTTGTGGTTTTCGGAAGGAACCCTTTGGATTCTCCAAACTTTTGAAGGTTCTGTGTGTAGGTGCTATGCCAGTATCTGAAATAGTTGTATTCTCATAAAAGTTAGATTTCTTAATTCCAAGTACCTCTCAAAAACTGCCTTGACTTGTCTGTTAATATCACCATGGAAGGGTTCTTCGTCTACAACAACAGCTGTTCCAGTCGATTTATAAAAGTATTCTGGTGCATAATTCGATGATCCAATAATGGTTCTTTTCTCAGAAAGTATGAATTTCGCATGCATTTTACGATCCTTGTATGATTCTTGTGCAGTTTGAGGGATTAGAACGAACTTCTGCAAATAGAATAAATTGGAATCGAAAAATTTAAAACGCTTACTATTTGAATGAACCGATTTTCCGATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAATACGTTTTGATTAAGTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTCGATCAAATTGGTGTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAATACGTTTTGATTAAGTTTCAGAAAATATTTGGACTACTATAGTAGAACCACAAAAGCTTATTTATACAATAATTTTACAAAATAATGTAGTACAAATTAAAAATTAAATTTAGTACGAAATTTTTAGTGTTACAAAAAATCTAAATAAAAATGATCGGATCAAGGAGTTGATCCTTTTCGGAGTCATTCTCATGAAACAGTCCAGAAACTGAATACTTTTCGTTGAAGACACCAATTTGATCGAAA</canonical_amplicon>
		<polymorphic_amplicon>CCAATACGTTTTGATTAAGTTTCAGAAAATATTTGGACTACTATAGTAGAACCACAAAAGCTTATTTATACAATAATTTTACAAAATAATGTAGTACAAATTAAAAATTAAATTTAGTACGAAATTTTTAGTGTTACAAAAAATCTAAATAAAAATGATCGGATCAAGGAGTTGATCCTTTTCRGAGTCATTCTCATGAAACAGTCCAGAAACTGAATACTTTTCGTTGAAGACACCAATTTGATCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4154</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>6233</contig_pos>
        <strand>+</strand>
        <context>AACCAAACCA[C/T]CCGGCGAATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAACTGAATACTTTTCGTTGAAGACACCAATTTGATCGAAACCAAACCA</left_flank>
        <right_flank>CCGGCGAATGGATTTGAAGGTTTTGTGGTTTTCGGAAGGAACCCTTTGGA</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAATCCACTTAAACTATCAACTTTGAGCCTAATTATCTCCATTCCTGTAAACGATATCAAAATGTTGTCAACTGATAAAATACTTTTGAAACTATGATAAATATTTTGTTAGTTGATTACTTTCTGATATCTTTTGTAGGAATTGAGATGTCTGAACTTAAAGTTGACAGTCCCGGTGAGCTTATGAATATTAGAGAAAATAGGTAAATAACGTTTTATCATTCAACATGCTTAAAATTACCAATACGTTTTGATTAAGTTTCAGAAAATATTTGGACTACTATAGTAGAACCACAAAAGCTTATTTATACAATAATTTTACAAAATAATGTAGTACAAATTAAAAATTAAATTTAGTACGAAATTTTTAGTGTTACAAAAAATCTAAATAAAAATGATCGGATCAAGGAGTTGATCCTTTTCGGAGTCATTCTCATGAAACAGTCCAGAAACTGAATACTTTTCGTTGAAGACACCAATTTGATCGAAACCAAACCATCCGGCGAATGGATTTGAAGGTTTTGTGGTTTTCGGAAGGAACCCTTTGGATTCTCCAAACTTTTGAAGGTTCTGTGTGTAGGTGCTATGCCAGTATCTGAAATAGTTGTATTCTCATAAAAGTTAGATTTCTTAATTCCAAGTACCTCTCAAAAACTGCCTTGACTTGTCTGTTAATATCACCATGGAAGGGTTCTTCGTCTACAACAACAGCTGTTCCAGTCGATTTATAAAAGTATTCTGGTGCATAATTCGATGATCCAATAATGGTTCTTTTCTCAGAAAGTATGAATTTCGCATGCATTTTACGATCCTTGTATGATTCTTGTGCAGTTTGAGGGATTAGAACGAACTTCTGCAAATAGAATAAATTGGAATCGAAAAATTTAAAACGCTTACTATTTGAATGAACCGATTTTCCGATGGGGAGTGCAAAACTGAAAGACTACGAAGATAGGCGAACATCAACTTTTGTTCTTCTTTCTGGTCCCCAGATACAAG</canonical>
            <polymorphic>CTAATCCACTTAAACTATCAACTTTGAGCCTAATTATCTCCATTCCTGTAAACGATATCAAAATGTTGTCAACTGATAAAATACTTTTGAAACTATGATAAATATTTTGTTAGTTGATTACTTTCTGATATCTTTTGTAGGAATTGAGATGTCTGAACTTAAAGTTGACAGTCCCGGTGAGCTTATGAATATTAGAGAAAATAGGTAAATAACGTTTTATCATTCAACATGCTTAAAATTACCAATACGTTTTGATTAAGTTTCAGAAAATATTTGGACTACTATAGTAGAACCACAAAAGCTTATTTATACAATAATTTTACAAAATAATGTAGTACAAATTAAAAATTAAATTTAGTACGAAATTTTTAGTGTTACAAAAAATCTAAATAAAAATGATCGGATCAAGGAGTTGATCCTTTTCGGAGTCATTCTCATGAAACAGTCCAGAAACTGAATACTTTTCGTTGAAGACACCAATTTGATCGAAACCAAACCAYCCGGCGAATGGATTTGAAGGTTTTGTGGTTTTCGGAAGGAACCCTTTGGATTCTCCAAACTTTTGAAGGTTCTGTGTGTAGGTGCTATGCCAGTATCTGAAATAGTTGTATTCTCATAAAAGTTAGATTTCTTAATTCCAAGTACCTCTCAAAAACTGCCTTGACTTGTCTGTTAATATCACCATGGAAGGGTTCTTCGTCTACAACAACAGCTGTTCCAGTCGATTTATAAAAGTATTCTGGTGCATAATTCGATGATCCAATAATGGTTCTTTTCTCAGAAAGTATGAATTTCGCATGCATTTTACGATCCTTGTATGATTCTTGTGCAGTTTGAGGGATTAGAACGAACTTCTGCAAATAGAATAAATTGGAATCGAAAAATTTAAAACGCTTACTATTTGAATGAACCGATTTTCCGATGGGGAGTGCAAAACTGAAAGACTACGAAGATAGGCGAACATCAACTTTTGTTCTTCTTTCTGGTCCCCAGATACAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAGTCCAGAAACTGAATACTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTCCATGGTGATATTAACAGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACAGTCCAGAAACTGAATACTTTTCGTTGAAGACACCAATTTGATCGAAACCAAACCATCCGGCGAATGGATTTGAAGGTTTTGTGGTTTTCGGAAGGAACCCTTTGGATTCTCCAAACTTTTGAAGGTTCTGTGTGTAGGTGCTATGCCAGTATCTGAAATAGTTGTATTCTCATAAAAGTTAGATTTCTTAATTCCAAGTACCTCTCAAAAACTGCCTTGACTTGTCTGTTAATATCACCATGGAAG</canonical_amplicon>
		<polymorphic_amplicon>AACAGTCCAGAAACTGAATACTTTTCGTTGAAGACACCAATTTGATCGAAACCAAACCAYCCGGCGAATGGATTTGAAGGTTTTGTGGTTTTCGGAAGGAACCCTTTGGATTCTCCAAACTTTTGAAGGTTCTGTGTGTAGGTGCTATGCCAGTATCTGAAATAGTTGTATTCTCATAAAAGTTAGATTTCTTAATTCCAAGTACCTCTCAAAAACTGCCTTGACTTGTCTGTTAATATCACCATGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4155</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>7618</contig_pos>
        <strand>+</strand>
        <context>AACTCTAATT[A/G]TAAGAATTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTGAAATTCGAGACCAATTTCCAGTTTCTGAAACAGGTAAACTCTAATT</left_flank>
        <right_flank>TAAGAATTTGGGGTCATGAAATCATGCTGAACCTGTGAAAAAGACTTCCA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGCGATCGGGAACTTGACAGCGGAGCTGCACCCTCCTGAAAATGGTCATTATGTTACGAAATCATCGGAAAAATACGTTCTTTTTTAAATATCTTACTGTACGGTACTGTATCTCTCAGAAGGAGAATAACTAACTCTCGGTTTTTGAAATAAATCCATGATGGGAAATACTGCATAACAGAAATATCAACAGATTCATCAGCTTCGTAGATCAAATTCAAGAGAGCTTCCAGGTCCCAACTGTGGGATGAAGAGAGGAGGAAGGATGGTGACGCCTGAAAAACGATACGAGTATTTGAATAAAGACGATACTAACCAAAAATTGGAATGTTGAATTCCCAATTTTGTGTGGCTGGAAATCCAGGGTTTCCAATTTCTCATTCCCGGAAAGCGAATCGAACATTTGATCGAAAAGACTAGACGCGTCTTTGGCAATGCACGGACAATCGTGAAATTCGAGACCAATTTCCAGTTTCTGAAACAGGTAAACTCTAATTATAAGAATTTGGGGTCATGAAATCATGCTGAACCTGTGAAAAAGACTTCCACTCGAAATTCAAACTTCCAACAAACAAGTGTCTATCATCCACAATAAATGTTTTACTGTGCTGTACACCACCTCCACCTCCATTCATCGTATTCATATCCAATCCTTGTCTTTGAACTAATCCAAGTCTTTCCAATTCATCTGCATCATAATCATTCTCTGGGAAAGTTGGTGGTTGACAATCGATCAATTTGATCAGGATTCCAGACTTTGCTTGATCTTCAATCATACTGTAGATCTGACGTCCTTCGAATGTTGAATTATCGACGTCATAACGGAGCTCTTTTCCTCGTAGATTCATCTTGTAGGCGAAGATGTCAATCTCGCTGAAAACCCGGGAATTCGAAAAACGGAAAGAAAGGAAAAACCAACCTTTTTGCAGATCCAAGTAGTTCCATCCATGACTCATATGAGTTTTTTGTATAAACTCGATCGACAAACCATACTCCAC</canonical>
            <polymorphic>AAAGCGATCGGGAACTTGACAGCGGAGCTGCACCCTCCTGAAAATGGTCATTATGTTACGAAATCATCGGAAAAATACGTTCTTTTTTAAATATCTTACTGTACGGTACTGTATCTCTCAGAAGGAGAATAACTAACTCTCGGTTTTTGAAATAAATCCATGATGGGAAATACTGCATAACAGAAATATCAACAGATTCATCAGCTTCGTAGATCAAATTCAAGAGAGCTTCCAGGTCCCAACTGTGGGATGAAGAGAGGAGGAAGGATGGTGACGCCTGAAAAACGATACGAGTATTTGAATAAAGACGATACTAACCAAAAATTGGAATGTTGAATTCCCAATTTTGTGTGGCTGGAAATCCAGGGTTTCCAATTTCTCATTCCCGGAAAGCGAATCGAACATTTGATCGAAAAGACTAGACGCGTCTTTGGCAATGCACGGACAATCGTGAAATTCGAGACCAATTTCCAGTTTCTGAAACAGGTAAACTCTAATTRTAAGAATTTGGGGTCATGAAATCATGCTGAACCTGTGAAAAAGACTTCCACTCGAAATTCAAACTTCCAACAAACAAGTGTCTATCATCCACAATAAATGTTTTACTGTGCTGTACACCACCTCCACCTCCATTCATCGTATTCATATCCAATCCTTGTCTTTGAACTAATCCAAGTCTTTCCAATTCATCTGCATCATAATCATTCTCTGGGAAAGTTGGTGGTTGACAATCGATCAATTTGATCAGGATTCCAGACTTTGCTTGATCTTCAATCATACTGTAGATCTGACGTCCTTCGAATGTTGAATTATCGACGTCATAACGGAGCTCTTTTCCTCGTAGATTCATCTTGTAGGCGAAGATGTCAATCTCGCTGAAAACCCGGGAATTCGAAAAACGGAAAGAAAGGAAAAACCAACCTTTTTGCAGATCCAAGTAGTTCCATCCATGACTCATATGAGTTTTTTGTATAAACTCGATCGACAAACCATACTCCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACATTTGATCGAAAAGACTAGA</pcr_primer_p1>
		<pcr_primer_p2>ATTGGATATGAATACGATGAATG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AACATTTGATCGAAAAGACTAGACGCGTCTTTGGCAATGCACGGACAATCGTGAAATTCGAGACCAATTTCCAGTTTCTGAAACAGGTAAACTCTAATTATAAGAATTTGGGGTCATGAAATCATGCTGAACCTGTGAAAAAGACTTCCACTCGAAATTCAAACTTCCAACAAACAAGTGTCTATCATCCACAATAAATGTTTTACTGTGCTGTACACCACCTCCACCTCCATTCATCGTATTCATATCCAAT</canonical_amplicon>
		<polymorphic_amplicon>AACATTTGATCGAAAAGACTAGACGCGTCTTTGGCAATGCACGGACAATCGTGAAATTCGAGACCAATTTCCAGTTTCTGAAACAGGTAAACTCTAATTRTAAGAATTTGGGGTCATGAAATCATGCTGAACCTGTGAAAAAGACTTCCACTCGAAATTCAAACTTCCAACAAACAAGTGTCTATCATCCACAATAAATGTTTTACTGTGCTGTACACCACCTCCACCTCCATTCATCGTATTCATATCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4156</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>7578</contig_pos>
        <strand>+</strand>
        <context>CGTGAAATTC[A/G]AGACCAATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGAAAAGACTAGACGCGTCTTTGGCAATGCACGGACAATCGTGAAATTC</left_flank>
        <right_flank>AGACCAATTTCCAGTTTCTGAAACAGGTAAACTCTAATTATAAGAATTTG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATTTCAGTCTAGGTCTGTTTTTCACCTTCCAAATTTTCAAAGCGATCGGGAACTTGACAGCGGAGCTGCACCCTCCTGAAAATGGTCATTATGTTACGAAATCATCGGAAAAATACGTTCTTTTTTAAATATCTTACTGTACGGTACTGTATCTCTCAGAAGGAGAATAACTAACTCTCGGTTTTTGAAATAAATCCATGATGGGAAATACTGCATAACAGAAATATCAACAGATTCATCAGCTTCGTAGATCAAATTCAAGAGAGCTTCCAGGTCCCAACTGTGGGATGAAGAGAGGAGGAAGGATGGTGACGCCTGAAAAACGATACGAGTATTTGAATAAAGACGATACTAACCAAAAATTGGAATGTTGAATTCCCAATTTTGTGTGGCTGGAAATCCAGGGTTTCCAATTTCTCATTCCCGGAAAGCGAATCGAACATTTGATCGAAAAGACTAGACGCGTCTTTGGCAATGCACGGACAATCGTGAAATTCGAGACCAATTTCCAGTTTCTGAAACAGGTAAACTCTAATTATAAGAATTTGGGGTCATGAAATCATGCTGAACCTGTGAAAAAGACTTCCACTCGAAATTCAAACTTCCAACAAACAAGTGTCTATCATCCACAATAAATGTTTTACTGTGCTGTACACCACCTCCACCTCCATTCATCGTATTCATATCCAATCCTTGTCTTTGAACTAATCCAAGTCTTTCCAATTCATCTGCATCATAATCATTCTCTGGGAAAGTTGGTGGTTGACAATCGATCAATTTGATCAGGATTCCAGACTTTGCTTGATCTTCAATCATACTGTAGATCTGACGTCCTTCGAATGTTGAATTATCGACGTCATAACGGAGCTCTTTTCCTCGTAGATTCATCTTGTAGGCGAAGATGTCAATCTCGCTGAAAACCCGGGAATTCGAAAAACGGAAAGAAAGGAAAAACCAACCTTTTTGCAGATCCAAGTAGTTCCATCCATGACTCATAT</canonical>
            <polymorphic>ACATTTCAGTCTAGGTCTGTTTTTCACCTTCCAAATTTTCAAAGCGATCGGGAACTTGACAGCGGAGCTGCACCCTCCTGAAAATGGTCATTATGTTACGAAATCATCGGAAAAATACGTTCTTTTTTAAATATCTTACTGTACGGTACTGTATCTCTCAGAAGGAGAATAACTAACTCTCGGTTTTTGAAATAAATCCATGATGGGAAATACTGCATAACAGAAATATCAACAGATTCATCAGCTTCGTAGATCAAATTCAAGAGAGCTTCCAGGTCCCAACTGTGGGATGAAGAGAGGAGGAAGGATGGTGACGCCTGAAAAACGATACGAGTATTTGAATAAAGACGATACTAACCAAAAATTGGAATGTTGAATTCCCAATTTTGTGTGGCTGGAAATCCAGGGTTTCCAATTTCTCATTCCCGGAAAGCGAATCGAACATTTGATCGAAAAGACTAGACGCGTCTTTGGCAATGCACGGACAATCGTGAAATTCRAGACCAATTTCCAGTTTCTGAAACAGGTAAACTCTAATTATAAGAATTTGGGGTCATGAAATCATGCTGAACCTGTGAAAAAGACTTCCACTCGAAATTCAAACTTCCAACAAACAAGTGTCTATCATCCACAATAAATGTTTTACTGTGCTGTACACCACCTCCACCTCCATTCATCGTATTCATATCCAATCCTTGTCTTTGAACTAATCCAAGTCTTTCCAATTCATCTGCATCATAATCATTCTCTGGGAAAGTTGGTGGTTGACAATCGATCAATTTGATCAGGATTCCAGACTTTGCTTGATCTTCAATCATACTGTAGATCTGACGTCCTTCGAATGTTGAATTATCGACGTCATAACGGAGCTCTTTTCCTCGTAGATTCATCTTGTAGGCGAAGATGTCAATCTCGCTGAAAACCCGGGAATTCGAAAAACGGAAAGAAAGGAAAAACCAACCTTTTTGCAGATCCAAGTAGTTCCATCCATGACTCATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>439 180 94 79 67 66 48 15 12</canonical_bands>
                <polymorphic_bands>439 180 142 79 67 66 15 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACATTTGATCGAAAAGACTAGA</pcr_primer_p1>
		<pcr_primer_p2>ATTGGATATGAATACGATGAATG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AACATTTGATCGAAAAGACTAGACGCGTCTTTGGCAATGCACGGACAATCGTGAAATTCGAGACCAATTTCCAGTTTCTGAAACAGGTAAACTCTAATTATAAGAATTTGGGGTCATGAAATCATGCTGAACCTGTGAAAAAGACTTCCACTCGAAATTCAAACTTCCAACAAACAAGTGTCTATCATCCACAATAAATGTTTTACTGTGCTGTACACCACCTCCACCTCCATTCATCGTATTCATATCCAAT</canonical_amplicon>
		<polymorphic_amplicon>AACATTTGATCGAAAAGACTAGACGCGTCTTTGGCAATGCACGGACAATCGTGAAATTCRAGACCAATTTCCAGTTTCTGAAACAGGTAAACTCTAATTATAAGAATTTGGGGTCATGAAATCATGCTGAACCTGTGAAAAAGACTTCCACTCGAAATTCAAACTTCCAACAAACAAGTGTCTATCATCCACAATAAATGTTTTACTGTGCTGTACACCACCTCCACCTCCATTCATCGTATTCATATCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4157</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>19506</contig_pos>
        <strand>+</strand>
        <context>CATGGGAATA[C/T]AAAATAAAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAACATAGCATCGAAGTTCATGGTTTCGGAATTTTGAATCATGGGAATA</left_flank>
        <right_flank>AAAATAAAGTACATGATGAATGAAATATGTTTGAGAATTTCAAAATTAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAGTTTTTTACTCGGGGAGCTTATCACTGTTTCAAATTGTTGTATTCTCAATTATGGACTTTTTCTCAGACGCCTATGTGAAGGCTAGAAAATCGAAATGGTTCTCAGTTCTGAAATGTAAGCTCCACACTCCTGAAAATGGGCAAAATGGCCGAAAATCAACTGAAAAGTATGTTTTTGTATATCTTGAAGACCGGTTTTGTAGGTTTGGGTGATCTGGATGAAACCCTTGTACTTTTTTTGCTCATTCAATTTATTGAACTACCATCCATCTATATGCCGCGCCACCGGTGCTCGAGACAGGCTGGTAATTATTGTTAGAAATTCAAATACGCCGAAACGTTTTGCTGGGTTTCCTTTCTTTGTAATTCTTCGAGAAACCCTTTCCTTGTCCCTTTCATGAAGATTCAAGATGTTTTCACTTTCATTAATCGAAACCGGGAACTAAAAACATAGCATCGAAGTTCATGGTTTCGGAATTTTGAATCATGGGAATACAAAATAAAGTACATGATGAATGAAATATGTTTGAGAATTTCAAAATTAAAAATGTCTGGTAAATAAATGCTAAATGGATCGAATATGCTTGAAAAACACAGATCATACTTGGTTAGAACATACATCATGAATGAAACCAATGCAAATTTATTAGTCAGCACATGCGCATCAATGCAACCCAATGAAGTCTCGGAAATCAGAGAATCTTCTCATCCTCTCATTCTACATACATTTCTTTCATTTGGCTCCTCCATTTCCGCTTGTTTCTTTTCTCTGTCTTCCGTGACTAATTACGGCACCAAGATGAGCTTCAAAAATACTATTACTTCGAGCTCTCCACTTTATTGAGCATTTTCTTCGCAGACCAAACTAGGCTAATTTTTGTGCTTTTGCTCTTTCTTTTTTTTAAATAAGTGCAAACGGCTACCTTGTTTCTTGAACGTTTTTCGGGTCCACTACTACAATAATCAAATGAAGGGATGATAGAAGGAATATACGAG</canonical>
            <polymorphic>TCCAGTTTTTTACTCGGGGAGCTTATCACTGTTTCAAATTGTTGTATTCTCAATTATGGACTTTTTCTCAGACGCCTATGTGAAGGCTAGAAAATCGAAATGGTTCTCAGTTCTGAAATGTAAGCTCCACACTCCTGAAAATGGGCAAAATGGCCGAAAATCAACTGAAAAGTATGTTTTTGTATATCTTGAAGACCGGTTTTGTAGGTTTGGGTGATCTGGATGAAACCCTTGTACTTTTTTTGCTCATTCAATTTATTGAACTACCATCCATCTATATGCCGCGCCACCGGTGCTCGAGACAGGCTGGTAATTATTGTTAGAAATTCAAATACGCCGAAACGTTTTGCTGGGTTTCCTTTCTTTGTAATTCTTCGAGAAACCCTTTCCTTGTCCCTTTCATGAAGATTCAAGATGTTTTCACTTTCATTAATCGAAACCGGGAACTAAAAACATAGCATCGAAGTTCATGGTTTCGGAATTTTGAATCATGGGAATAYAAAATAAAGTACATGATGAATGAAATATGTTTGAGAATTTCAAAATTAAAAATGTCTGGTAAATAAATGCTAAATGGATCGAATATGCTTGAAAAACACAGATCATACTTGGTTAGAACATACATCATGAATGAAACCAATGCAAATTTATTAGTCAGCACATGCGCATCAATGCAACCCAATGAAGTCTCGGAAATCAGAGAATCTTCTCATCCTCTCATTCTACATACATTTCTTTCATTTGGCTCCTCCATTTCCGCTTGTTTCTTTTCTCTGTCTTCCGTGACTAATTACGGCACCAAGATGAGCTTCAAAAATACTATTACTTCGAGCTCTCCACTTTATTGAGCATTTTCTTCGCAGACCAAACTAGGCTAATTTTTGTGCTTTTGCTCTTTCTTTTTTTTAAATAAGTGCAAACGGCTACCTTGTTTCTTGAACGTTTTTCGGGTCCACTACTACAATAATCAAATGAAGGGATGATAGAAGGAATATACGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGATTCAAGATGTTTTCACT</pcr_primer_p1>
		<pcr_primer_p2>TAATAAATTTGCATTGGTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGAAGATTCAAGATGTTTTCACTTTCATTAATCGAAACCGGGAACTAAAAACATAGCATCGAAGTTCATGGTTTCGGAATTTTGAATCATGGGAATACAAAATAAAGTACATGATGAATGAAATATGTTTGAGAATTTCAAAATTAAAAATGTCTGGTAAATAAATGCTAAATGGATCGAATATGCTTGAAAAACACAGATCATACTTGGTTAGAACATACATCATGAATGAAACCAATGCAAATTTATTA</canonical_amplicon>
		<polymorphic_amplicon>TGAAGATTCAAGATGTTTTCACTTTCATTAATCGAAACCGGGAACTAAAAACATAGCATCGAAGTTCATGGTTTCGGAATTTTGAATCATGGGAATAYAAAATAAAGTACATGATGAATGAAATATGTTTGAGAATTTCAAAATTAAAAATGTCTGGTAAATAAATGCTAAATGGATCGAATATGCTTGAAAAACACAGATCATACTTGGTTAGAACATACATCATGAATGAAACCAATGCAAATTTATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4158</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>23584</contig_pos>
        <strand>+</strand>
        <context>AGAGTTGRAA[A/G]TGCAGGAGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTCAATTTAAGCGCCAAATTTGAATATGACCTGAATAGAGAGTTGGAA</left_flank>
        <right_flank>TGCAGGAGAGCTCTTTTCTTGAGATTTTCGATAGAATCCGTGTCTTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACATCTTCTTCTACTTCTTTATCTCCTTCTACTTCACTCGTTTTGTTCCGATTGGAGATGAATCTGAGGAGAAGAATTTGAATCTAAAGAAGAAGAAGGAGTGGAAAGGAGAAGAAGAAGAAGCAAGAAACGACGGATCACACGGCCCTTCTTTTTTCTTTCATTCCATTACAAGTTGCACTCAGATTTTCAACTGAAAACTTGTTTTATCTCCCTCTCTCTCTCTCTTTTGGGATTTCGTTTTGATCATTTTTGACCAATTCCTTTTCTTCAGGCATTTTCCCCCATTCCTGATCCATCTCTCTTCTTCCAGCAATTCTACAGTATTTCACTTCTACAAGAATCTCTGAGGCTGAAAAAAAAGATACAAGTTGCGTCTCCTAGATTTTTCAAAGGTTTTCATGTGCTCTCTAAGTCTGCGTCTCTCAATTCGAAACTCTATTTTTCTGATTCAATTTAAGCGCCAAATTTGAATATGACCTGAATAGAGAGTTGGAAGTGCAGGAGAGCTCTTTTCTTGAGATTTTCGATAGAATCCGTGTCTTTTTTGAATAGCGGTACTCTAATGAAATAGAGTAGTGTGTCTGGGCGGGGGAAAAATAATCCTTGAACAACAACTACTGTAGATGTTTTGAAGATCAGAGTTTTTTGAGAACGTATTCGACTGTTTGGGATATTTTTTATTGTAATAGCAAAATAATGATTTCAAAAATATTACCGTAAAACCTGTAATAGAAGGCCCCCCTCACTTTCAAATTTAGGAGTATTTAAATATCTCAGTCCCTGTGATAGATATCAAAAAGTTGTCGACTGATAAATTGTTCATCATAAAAAAAATAAAAAATTTTTATCAGTAGACACATGTTTGATATCTTTTATAGCAACCGAGATAATTGAGTTCAAACTTAAAAGTGTCGAGAGTCGCTTTACCATAAAACTTTTATGGTGTCTCCAAATTTTTCAATCAGGAAAAATAATAGTCGTTTCTGATTTCTAAAA</canonical>
            <polymorphic>TACATCTTCTTCTACTTCTTTATCTCCTTCTACTTCACTCGTTTTGTTCCGATTGGAGATGAATCTGAGGAGAAGAATTTGAATCTAAAGAAGAAGAAGGAGTGGAAAGGAGAAGAAGAAGAAGCAAGAAACGACGGATCACACGGCCCTTCTTTTTTCTTTCATTCCATTACAAGTTGCACTCAGATTTTCAACTGAAAACTTGTTTTATCTCCCTCTCTCTCTCTCTTTTGGGATTTCGTTTTGATCATTTTTGACCAATTCCTTTTCTTCAGGCATTTTCCCCCATTCCTGATCCATCTCTCTTCTTCCAGCAATTCTACAGTATTTCACTTCTACAAGAATCTCTGAGGCTGAAAAAAAAGATACAAGTTGCGTCTCCTAGATTTTTCAAAGGTTTTCATGTGCTCTCTAAGTCTGCGTCTCTCAATTCGAAACTCTATTTTTCTGATTCAATTTAAGCGCCAAATTTGAATATGACCTGAATAGAGAGTTGGAARTGCAGGAGAGCTCTTTTCTTGAGATTTTCGATAGAATCCGTGTCTTTTTTGAATAGCGGTACTCTAATGAAATAGAGTAGTGTGTCTGGGCGGGGGAAAAATAATCCTTGAACAACAACTACTGTAGATGTTTTGAAGATCAGAGTTTTTTGAGAACGTATTCGACTGTTTGGGATATTTTTTATTGTAATAGCAAAATAATGATTTCAAAAATATTACCGTAAAACCTGTAATAGAAGGCCCCCCTCACTTTCAAATTTAGGAGTATTTAAATATCTCAGTCCCTGTGATAGATATCAAAAAGTTGTCGACTGATAAATTGTTCATCATAAAAAAAATAAAAAATTTTTATCAGTAGACACATGTTTGATATCTTTTATAGCAACCGAGATAATTGAGTTCAAACTTAAAAGTGTCGAGAGTCGCTTTACCATAAAACTTTTATGGTGTCTCCAAATTTTTCAATCAGGAAAAATAATAGTCGTTTCTGATTTCTAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>165 151 95 75 72 67 54 51 40 40 40 38 37 37 34 2 2</canonical_bands>
                <polymorphic_bands>165 151 135 75 72 67 54 51 40 40 38 37 37 34 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCATGTGCTCTCTAAGTCT</pcr_primer_p1>
		<pcr_primer_p2>ACTCTGATCTTCAAAACATCTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCATGTGCTCTCTAAGTCTGCGTCTCTCAATTCGAAACTCTATTTTTCTGATTCAATTTAAGCGCCAAATTTGAATATGACCTGAATAGAGAGTTGGAAGTGCAGGAGAGCTCTTTTCTTGAGATTTTCGATAGAATCCGTGTCTTTTTTGAATAGCGGTACTCTAATGAAATAGAGTAGTGTGTCTGGGCGGGGGAAAAATAATCCTTGAACAACAACTACTGTAGATGTTTTGAAGATCAGAGT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCATGTGCTCTCTAAGTCTGCGTCTCTCAATTCGAAACTCTATTTTTCTGATTCAATTTAAGCGCCAAATTTGAATATGACCTGAATAGAGAGTTGGAARTGCAGGAGAGCTCTTTTCTTGAGATTTTCGATAGAATCCGTGTCTTTTTTGAATAGCGGTACTCTAATGAAATAGAGTAGTGTGTCTGGGCGGGGGAAAAATAATCCTTGAACAACAACTACTGTAGATGTTTTGAAGATCAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4159</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>23581</contig_pos>
        <strand>+</strand>
        <context>TAGAGAGTTG[A/G]AARTGCAGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGATTCAATTTAAGCGCCAAATTTGAATATGACCTGAATAGAGAGTTG</left_flank>
        <right_flank>AAGTGCAGGAGAGCTCTTTTCTTGAGATTTTCGATAGAATCCGTGTCTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTACATCTTCTTCTACTTCTTTATCTCCTTCTACTTCACTCGTTTTGTTCCGATTGGAGATGAATCTGAGGAGAAGAATTTGAATCTAAAGAAGAAGAAGGAGTGGAAAGGAGAAGAAGAAGAAGCAAGAAACGACGGATCACACGGCCCTTCTTTTTTCTTTCATTCCATTACAAGTTGCACTCAGATTTTCAACTGAAAACTTGTTTTATCTCCCTCTCTCTCTCTCTTTTGGGATTTCGTTTTGATCATTTTTGACCAATTCCTTTTCTTCAGGCATTTTCCCCCATTCCTGATCCATCTCTCTTCTTCCAGCAATTCTACAGTATTTCACTTCTACAAGAATCTCTGAGGCTGAAAAAAAAGATACAAGTTGCGTCTCCTAGATTTTTCAAAGGTTTTCATGTGCTCTCTAAGTCTGCGTCTCTCAATTCGAAACTCTATTTTTCTGATTCAATTTAAGCGCCAAATTTGAATATGACCTGAATAGAGAGTTGGAAGTGCAGGAGAGCTCTTTTCTTGAGATTTTCGATAGAATCCGTGTCTTTTTTGAATAGCGGTACTCTAATGAAATAGAGTAGTGTGTCTGGGCGGGGGAAAAATAATCCTTGAACAACAACTACTGTAGATGTTTTGAAGATCAGAGTTTTTTGAGAACGTATTCGACTGTTTGGGATATTTTTTATTGTAATAGCAAAATAATGATTTCAAAAATATTACCGTAAAACCTGTAATAGAAGGCCCCCCTCACTTTCAAATTTAGGAGTATTTAAATATCTCAGTCCCTGTGATAGATATCAAAAAGTTGTCGACTGATAAATTGTTCATCATAAAAAAAATAAAAAATTTTTATCAGTAGACACATGTTTGATATCTTTTATAGCAACCGAGATAATTGAGTTCAAACTTAAAAGTGTCGAGAGTCGCTTTACCATAAAACTTTTATGGTGTCTCCAAATTTTTCAATCAGGAAAAATAATAGTCGTTTCTGATTTCTA</canonical>
            <polymorphic>AACTACATCTTCTTCTACTTCTTTATCTCCTTCTACTTCACTCGTTTTGTTCCGATTGGAGATGAATCTGAGGAGAAGAATTTGAATCTAAAGAAGAAGAAGGAGTGGAAAGGAGAAGAAGAAGAAGCAAGAAACGACGGATCACACGGCCCTTCTTTTTTCTTTCATTCCATTACAAGTTGCACTCAGATTTTCAACTGAAAACTTGTTTTATCTCCCTCTCTCTCTCTCTTTTGGGATTTCGTTTTGATCATTTTTGACCAATTCCTTTTCTTCAGGCATTTTCCCCCATTCCTGATCCATCTCTCTTCTTCCAGCAATTCTACAGTATTTCACTTCTACAAGAATCTCTGAGGCTGAAAAAAAAGATACAAGTTGCGTCTCCTAGATTTTTCAAAGGTTTTCATGTGCTCTCTAAGTCTGCGTCTCTCAATTCGAAACTCTATTTTTCTGATTCAATTTAAGCGCCAAATTTGAATATGACCTGAATAGAGAGTTGRAAGTGCAGGAGAGCTCTTTTCTTGAGATTTTCGATAGAATCCGTGTCTTTTTTGAATAGCGGTACTCTAATGAAATAGAGTAGTGTGTCTGGGCGGGGGAAAAATAATCCTTGAACAACAACTACTGTAGATGTTTTGAAGATCAGAGTTTTTTGAGAACGTATTCGACTGTTTGGGATATTTTTTATTGTAATAGCAAAATAATGATTTCAAAAATATTACCGTAAAACCTGTAATAGAAGGCCCCCCTCACTTTCAAATTTAGGAGTATTTAAATATCTCAGTCCCTGTGATAGATATCAAAAAGTTGTCGACTGATAAATTGTTCATCATAAAAAAAATAAAAAATTTTTATCAGTAGACACATGTTTGATATCTTTTATAGCAACCGAGATAATTGAGTTCAAACTTAAAAGTGTCGAGAGTCGCTTTACCATAAAACTTTTATGGTGTCTCCAAATTTTTCAATCAGGAAAAATAATAGTCGTTTCTGATTTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCATGTGCTCTCTAAGTCT</pcr_primer_p1>
		<pcr_primer_p2>ACTCTGATCTTCAAAACATCTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCATGTGCTCTCTAAGTCTGCGTCTCTCAATTCGAAACTCTATTTTTCTGATTCAATTTAAGCGCCAAATTTGAATATGACCTGAATAGAGAGTTGGAAGTGCAGGAGAGCTCTTTTCTTGAGATTTTCGATAGAATCCGTGTCTTTTTTGAATAGCGGTACTCTAATGAAATAGAGTAGTGTGTCTGGGCGGGGGAAAAATAATCCTTGAACAACAACTACTGTAGATGTTTTGAAGATCAGAGT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCATGTGCTCTCTAAGTCTGCGTCTCTCAATTCGAAACTCTATTTTTCTGATTCAATTTAAGCGCCAAATTTGAATATGACCTGAATAGAGAGTTGRAAGTGCAGGAGAGCTCTTTTCTTGAGATTTTCGATAGAATCCGTGTCTTTTTTGAATAGCGGTACTCTAATGAAATAGAGTAGTGTGTCTGGGCGGGGGAAAAATAATCCTTGAACAACAACTACTGTAGATGTTTTGAAGATCAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4160</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>23461</contig_pos>
        <strand></strand>
        <context>TACAAGTTGC[G/C]TCTCCTAGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>ATTTCACTTCTACAAGAATCTCTGAGGCTGAAAAAAAAGATACAAGTTGC</left_flank>
        <right_flank>TCTCCTAGATTTTTCAAAGGTTTTCATGTGCTCTCTAAGTCTGCGTCTCT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCTTCCCATAGAATATTCAACAAGTTTCAACAAGCACTTCTAGAGAGGCCATTGCTCCTGCCCCACAGATACATTTTCGTTTTCTTTCTCTTCTTCAGAAACTTCTTCGTTTTCTTCAACTACATCTTCTTCTACTTCTTTATCTCCTTCTACTTCACTCGTTTTGTTCCGATTGGAGATGAATCTGAGGAGAAGAATTTGAATCTAAAGAAGAAGAAGGAGTGGAAAGGAGAAGAAGAAGAAGCAAGAAACGACGGATCACACGGCCCTTCTTTTTTCTTTCATTCCATTACAAGTTGCACTCAGATTTTCAACTGAAAACTTGTTTTATCTCCCTCTCTCTCTCTCTTTTGGGATTTCGTTTTGATCATTTTTGACCAATTCCTTTTCTTCAGGCATTTTCCCCCATTCCTGATCCATCTCTCTTCTTCCAGCAATTCTACAGTATTTCACTTCTACAAGAATCTCTGAGGCTGAAAAAAAAGATACAAGTTGCGTCTCCTAGATTTTTCAAAGGTTTTCATGTGCTCTCTAAGTCTGCGTCTCTCAATTCGAAACTCTATTTTTCTGATTCAATTTAAGCGCCAAATTTGAATATGACCTGAATAGAGAGTTGGAAGTGCAGGAGAGCTCTTTTCTTGAGATTTTCGATAGAATCCGTGTCTTTTTTGAATAGCGGTACTCTAATGAAATAGAGTAGTGTGTCTGGGCGGGGGAAAAATAATCCTTGAACAACAACTACTGTAGATGTTTTGAAGATCAGAGTTTTTTGAGAACGTATTCGACTGTTTGGGATATTTTTTATTGTAATAGCAAAATAATGATTTCAAAAATATTACCGTAAAACCTGTAATAGAAGGCCCCCCTCACTTTCAAATTTAGGAGTATTTAAATATCTCAGTCCCTGTGATAGATATCAAAAAGTTGTCGACTGATAAATTGTTCATCATAAAAAAAATAAAAAATTTTTATCAGTAGACACATGTTTGATATCTTT</canonical>
            <polymorphic>TCTTCTTCCCATAGAATATTCAACAAGTTTCAACAAGCACTTCTAGAGAGGCCATTGCTCCTGCCCCACAGATACATTTTCGTTTTCTTTCTCTTCTTCAGAAACTTCTTCGTTTTCTTCAACTACATCTTCTTCTACTTCTTTATCTCCTTCTACTTCACTCGTTTTGTTCCGATTGGAGATGAATCTGAGGAGAAGAATTTGAATCTAAAGAAGAAGAAGGAGTGGAAAGGAGAAGAAGAAGAAGCAAGAAACGACGGATCACACGGCCCTTCTTTTTTCTTTCATTCCATTACAAGTTGCACTCAGATTTTCAACTGAAAACTTGTTTTATCTCCCTCTCTCTCTCTCTTTTGGGATTTCGTTTTGATCATTTTTGACCAATTCCTTTTCTTCAGGCATTTTCCCCCATTCCTGATCCATCTCTCTTCTTCCAGCAATTCTACAGTATTTCACTTCTACAAGAATCTCTGAGGCTGAAAAAAAAGATACAAGTTGCSTCTCCTAGATTTTTCAAAGGTTTTCATGTGCTCTCTAAGTCTGCGTCTCTCAATTCGAAACTCTATTTTTCTGATTCAATTTAAGCGCCAAATTTGAATATGACCTGAATAGAGAGTTGGAAGTGCAGGAGAGCTCTTTTCTTGAGATTTTCGATAGAATCCGTGTCTTTTTTGAATAGCGGTACTCTAATGAAATAGAGTAGTGTGTCTGGGCGGGGGAAAAATAATCCTTGAACAACAACTACTGTAGATGTTTTGAAGATCAGAGTTTTTTGAGAACGTATTCGACTGTTTGGGATATTTTTTATTGTAATAGCAAAATAATGATTTCAAAAATATTACCGTAAAACCTGTAATAGAAGGCCCCCCTCACTTTCAAATTTAGGAGTATTTAAATATCTCAGTCCCTGTGATAGATATCAAAAAGTTGTCGACTGATAAATTGTTCATCATAAAAAAAATAAAAAATTTTTATCAGTAGACACATGTTTGATATCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTGATCCATCTCTCTT</pcr_primer_p1>
		<pcr_primer_p2>TCTATCGAAAATCTCAAGAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTGATCCATCTCTCTTCTTCCAGCAATTCTACAGTATTTCACTTCTACAAGAATCTCTGAGGCTGAAAAAAAAGATACAAGTTGCGTCTCCTAGATTTTTCAAAGGTTTTCATGTGCTCTCTAAGTCTGCGTCTCTCAATTCGAAACTCTATTTTTCTGATTCAATTTAAGCGCCAAATTTGAATATGACCTGAATAGAGAGTTGGAAGTGCAGGAGAGCTCTTTTCTTGAGATTTTCGATAGA</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTGATCCATCTCTCTTCTTCCAGCAATTCTACAGTATTTCACTTCTACAAGAATCTCTGAGGCTGAAAAAAAAGATACAAGTTGCSTCTCCTAGATTTTTCAAAGGTTTTCATGTGCTCTCTAAGTCTGCGTCTCTCAATTCGAAACTCTATTTTTCTGATTCAATTTAAGCGCCAAATTTGAATATGACCTGAATAGAGAGTTGGAAGTGCAGGAGAGCTCTTTTCTTGAGATTTTCGATAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4161</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>23331</contig_pos>
        <strand></strand>
        <context>TTTCGTTTTG[A/G]TCATTTTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAACTTGTTTTATCTCCCTCTCTCTCTCTCTTTTGGGATTTCGTTTTG</left_flank>
        <right_flank>TCATTTTTGACCAATTCCTTTTCTTCAGGCATTTTCCCCCATTCCTGATC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCAAACTTTGAAATGAAGACTGAACTCGAATCTGAATGTATTGTTTAGGAGTATCAGCTCTTTCACAATTCGGTTCTTCCACTACATTAATCGGATCCCTGTCTATTAGTCTGTTCTCTATTAATTAATTCTTCTTCCCATAGAATATTCAACAAGTTTCAACAAGCACTTCTAGAGAGGCCATTGCTCCTGCCCCACAGATACATTTTCGTTTTCTTTCTCTTCTTCAGAAACTTCTTCGTTTTCTTCAACTACATCTTCTTCTACTTCTTTATCTCCTTCTACTTCACTCGTTTTGTTCCGATTGGAGATGAATCTGAGGAGAAGAATTTGAATCTAAAGAAGAAGAAGGAGTGGAAAGGAGAAGAAGAAGAAGCAAGAAACGACGGATCACACGGCCCTTCTTTTTTCTTTCATTCCATTACAAGTTGCACTCAGATTTTCAACTGAAAACTTGTTTTATCTCCCTCTCTCTCTCTCTTTTGGGATTTCGTTTTGATCATTTTTGACCAATTCCTTTTCTTCAGGCATTTTCCCCCATTCCTGATCCATCTCTCTTCTTCCAGCAATTCTACAGTATTTCACTTCTACAAGAATCTCTGAGGCTGAAAAAAAAGATACAAGTTGCGTCTCCTAGATTTTTCAAAGGTTTTCATGTGCTCTCTAAGTCTGCGTCTCTCAATTCGAAACTCTATTTTTCTGATTCAATTTAAGCGCCAAATTTGAATATGACCTGAATAGAGAGTTGGAAGTGCAGGAGAGCTCTTTTCTTGAGATTTTCGATAGAATCCGTGTCTTTTTTGAATAGCGGTACTCTAATGAAATAGAGTAGTGTGTCTGGGCGGGGGAAAAATAATCCTTGAACAACAACTACTGTAGATGTTTTGAAGATCAGAGTTTTTTGAGAACGTATTCGACTGTTTGGGATATTTTTTATTGTAATAGCAAAATAATGATTTCAAAAATATTACCGTAAAACCTGTAATAGAAGGCCCCCCT</canonical>
            <polymorphic>ACCAAACTTTGAAATGAAGACTGAACTCGAATCTGAATGTATTGTTTAGGAGTATCAGCTCTTTCACAATTCGGTTCTTCCACTACATTAATCGGATCCCTGTCTATTAGTCTGTTCTCTATTAATTAATTCTTCTTCCCATAGAATATTCAACAAGTTTCAACAAGCACTTCTAGAGAGGCCATTGCTCCTGCCCCACAGATACATTTTCGTTTTCTTTCTCTTCTTCAGAAACTTCTTCGTTTTCTTCAACTACATCTTCTTCTACTTCTTTATCTCCTTCTACTTCACTCGTTTTGTTCCGATTGGAGATGAATCTGAGGAGAAGAATTTGAATCTAAAGAAGAAGAAGGAGTGGAAAGGAGAAGAAGAAGAAGCAAGAAACGACGGATCACACGGCCCTTCTTTTTTCTTTCATTCCATTACAAGTTGCACTCAGATTTTCAACTGAAAACTTGTTTTATCTCCCTCTCTCTCTCTCTTTTGGGATTTCGTTTTGRTCATTTTTGACCAATTCCTTTTCTTCAGGCATTTTCCCCCATTCCTGATCCATCTCTCTTCTTCCAGCAATTCTACAGTATTTCACTTCTACAAGAATCTCTGAGGCTGAAAAAAAAGATACAAGTTGCGTCTCCTAGATTTTTCAAAGGTTTTCATGTGCTCTCTAAGTCTGCGTCTCTCAATTCGAAACTCTATTTTTCTGATTCAATTTAAGCGCCAAATTTGAATATGACCTGAATAGAGAGTTGGAAGTGCAGGAGAGCTCTTTTCTTGAGATTTTCGATAGAATCCGTGTCTTTTTTGAATAGCGGTACTCTAATGAAATAGAGTAGTGTGTCTGGGCGGGGGAAAAATAATCCTTGAACAACAACTACTGTAGATGTTTTGAAGATCAGAGTTTTTTGAGAACGTATTCGACTGTTTGGGATATTTTTTATTGTAATAGCAAAATAATGATTTCAAAAATATTACCGTAAAACCTGTAATAGAAGGCCCCCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>344 295 110 109 94 48</canonical_bands>
                <polymorphic_bands>344 295 157 110 94</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTTCATTCCATTACAAGTT</pcr_primer_p1>
		<pcr_primer_p2>CATGAAAACCTTTGAAAAATCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTTCATTCCATTACAAGTTGCACTCAGATTTTCAACTGAAAACTTGTTTTATCTCCCTCTCTCTCTCTCTTTTGGGATTTCGTTTTGATCATTTTTGACCAATTCCTTTTCTTCAGGCATTTTCCCCCATTCCTGATCCATCTCTCTTCTTCCAGCAATTCTACAGTATTTCACTTCTACAAGAATCTCTGAGGCTGAAAAAAAAGATACAAGTTGCGTCTCCTAGATTTTTCAAAGGTTTTCATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTTCATTCCATTACAAGTTGCACTCAGATTTTCAACTGAAAACTTGTTTTATCTCCCTCTCTCTCTCTCTTTTGGGATTTCGTTTTGRTCATTTTTGACCAATTCCTTTTCTTCAGGCATTTTCCCCCATTCCTGATCCATCTCTCTTCTTCCAGCAATTCTACAGTATTTCACTTCTACAAGAATCTCTGAGGCTGAAAAAAAAGATACAAGTTGCGTCTCCTAGATTTTTCAAAGGTTTTCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4162</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>23223</contig_pos>
        <strand>+</strand>
        <context>aaACGACGGA[G/T]CACACGGCCC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGAAGAAGAAGGAGTGGAAAGGAGAAGAAGAAGAAGCAAGAAACGACGGA</left_flank>
        <right_flank>CACACGGCCCTTCTTTTTTCTTTCATTCCATTACAAGTTGCACTCAGATT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTGAAGGAACCGAGATAATTCAGCTCAAACTTGAGTGTCTGAAAGTTCCGTTTAAATTTTTTCTTTGCCTGAAAGTGCCGTCTAAATTTCTCATTGATTCATAAATCACCAAACTTTGAAATGAAGACTGAACTCGAATCTGAATGTATTGTTTAGGAGTATCAGCTCTTTCACAATTCGGTTCTTCCACTACATTAATCGGATCCCTGTCTATTAGTCTGTTCTCTATTAATTAATTCTTCTTCCCATAGAATATTCAACAAGTTTCAACAAGCACTTCTAGAGAGGCCATTGCTCCTGCCCCACAGATACATTTTCGTTTTCTTTCTCTTCTTCAGAAACTTCTTCGTTTTCTTCAACTACATCTTCTTCTACTTCTTTATCTCCTTCTACTTCACTCGTTTTGTTCCGATTGGAGATGAATCTGAGGAGAAGAATTTGAATCTAAAGAAGAAGAAGGAGTGGAAAGGAGAAGAAGAAGAAGCAAGAAACGACGGATCACACGGCCCTTCTTTTTTCTTTCATTCCATTACAAGTTGCACTCAGATTTTCAACTGAAAACTTGTTTTATCTCCCTCTCTCTCTCTCTTTTGGGATTTCGTTTTGATCATTTTTGACCAATTCCTTTTCTTCAGGCATTTTCCCCCATTCCTGATCCATCTCTCTTCTTCCAGCAATTCTACAGTATTTCACTTCTACAAGAATCTCTGAGGCTGAAAAAAAAGATACAAGTTGCGTCTCCTAGATTTTTCAAAGGTTTTCATGTGCTCTCTAAGTCTGCGTCTCTCAATTCGAAACTCTATTTTTCTGATTCAATTTAAGCGCCAAATTTGAATATGACCTGAATAGAGAGTTGGAAGTGCAGGAGAGCTCTTTTCTTGAGATTTTCGATAGAATCCGTGTCTTTTTTGAATAGCGGTACTCTAATGAAATAGAGTAGTGTGTCTGGGCGGGGGAAAAATAATCCTTGAACAACAACTACTGTAGATGTTTTGAAGA</canonical>
            <polymorphic>CCTGAAGGAACCGAGATAATTCAGCTCAAACTTGAGTGTCTGAAAGTTCCGTTTAAATTTTTTCTTTGCCTGAAAGTGCCGTCTAAATTTCTCATTGATTCATAAATCACCAAACTTTGAAATGAAGACTGAACTCGAATCTGAATGTATTGTTTAGGAGTATCAGCTCTTTCACAATTCGGTTCTTCCACTACATTAATCGGATCCCTGTCTATTAGTCTGTTCTCTATTAATTAATTCTTCTTCCCATAGAATATTCAACAAGTTTCAACAAGCACTTCTAGAGAGGCCATTGCTCCTGCCCCACAGATACATTTTCGTTTTCTTTCTCTTCTTCAGAAACTTCTTCGTTTTCTTCAACTACATCTTCTTCTACTTCTTTATCTCCTTCTACTTCACTCGTTTTGTTCCGATTGGAGATGAATCTGAGGAGAAGAATTTGAATCTAAAGAAGAAGAAGGAGTGGAAAGGAGAAGAAGAAGAAGCAAGAAACGACGGAKCACACGGCCCTTCTTTTTTCTTTCATTCCATTACAAGTTGCACTCAGATTTTCAACTGAAAACTTGTTTTATCTCCCTCTCTCTCTCTCTTTTGGGATTTCGTTTTGATCATTTTTGACCAATTCCTTTTCTTCAGGCATTTTCCCCCATTCCTGATCCATCTCTCTTCTTCCAGCAATTCTACAGTATTTCACTTCTACAAGAATCTCTGAGGCTGAAAAAAAAGATACAAGTTGCGTCTCCTAGATTTTTCAAAGGTTTTCATGTGCTCTCTAAGTCTGCGTCTCTCAATTCGAAACTCTATTTTTCTGATTCAATTTAAGCGCCAAATTTGAATATGACCTGAATAGAGAGTTGGAAGTGCAGGAGAGCTCTTTTCTTGAGATTTTCGATAGAATCCGTGTCTTTTTTGAATAGCGGTACTCTAATGAAATAGAGTAGTGTGTCTGGGCGGGGGAAAAATAATCCTTGAACAACAACTACTGTAGATGTTTTGAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>346 295 202 109 48</canonical_bands>
                <polymorphic_bands>404 346 202 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTGAGGAGAAGAATTTGAATC</pcr_primer_p1>
		<pcr_primer_p2>GGAAGAAGAGAGATGGATCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTGAGGAGAAGAATTTGAATCTAAAGAAGAAGAAGGAGTGGAAAGGAGAAGAAGAAGAAGCAAGAAACGACGGATCACACGGCCCTTCTTTTTTCTTTCATTCCATTACAAGTTGCACTCAGATTTTCAACTGAAAACTTGTTTTATCTCCCTCTCTCTCTCTCTTTTGGGATTTCGTTTTGATCATTTTTGACCAATTCCTTTTCTTCAGGCATTTTCCCCCATTCCTGATCCATCTCTCTTCTTCC</canonical_amplicon>
		<polymorphic_amplicon>ATCTGAGGAGAAGAATTTGAATCTAAAGAAGAAGAAGGAGTGGAAAGGAGAAGAAGAAGAAGCAAGAAACGACGGAKCACACGGCCCTTCTTTTTTCTTTCATTCCATTACAAGTTGCACTCAGATTTTCAACTGAAAACTTGTTTTATCTCCCTCTCTCTCTCTCTTTTGGGATTTCGTTTTGATCATTTTTGACCAATTCCTTTTCTTCAGGCATTTTCCCCCATTCCTGATCCATCTCTCTTCTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4163</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>81569</contig_pos>
        <strand>+</strand>
        <context>ATATTTTCAG[G/T]GCCTGAAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTTTTGATTTTTTTGTTTCGATATGAATCTACATTTTTATATTTTCAG</left_flank>
        <right_flank>GCCTGAAATTGAGCAATATCAAGTCTAATGACAAGATGACCATTTAGAAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGAATGTCAGAATTTTATGTGCTATTATTCCCATTTTAAAGCGAATTTTCGAGAGAAAAAAATTGATTTTTTCTCAGATTTTTTTTTCAAAAAATTTTGACCTTTTTAGGTTTTTCAACTATTTTTGATTTTTCCAAATTTTTTGTTGGAAATTTGACAGGATGGTTCGCGAAGATTACTGTAAAAAACCTTTCTACAGTAATCTACAATAATCTTCGCGAACGCCATCCTGTCAAATTTCAGACAAAAAACCGGAAAAATCGAAAAAGAATCTTTGAAAATAGCTGGAAAACCTGAAAATGTTTAAAAATTTCGCGAAAATCTGATGAAAAGTACTTTTTTTTTCGAAAAAATTGCTAATTTTTCGGAGTTTTCAGTAGTTCTCGGTGAGAAAATTCCAGAAGTTTCCAGAAATGGACGAGAAGCGATTTTTCAGGATTTGCCTTTTTTTTTTTGATTTTTTTGTTTCGATATGAATCTACATTTTTATATTTTCAGGGCCTGAAATTGAGCAATATCAAGTCTAATGACAAGATGACCATTTAGAACAAATTTTCAATCTAGTAAAATAGAAACTCACCCCATTTTCATCTAAAACATTGAACTGAAACATAATAGCTCAAGTGAAGAAATCAACCATCGTTTGTTTTAAGCCCACACTCTCGCTTCCGTCATCTGATAACACTTACATATGTTTCTTACTCGTCCATGTTTTTTGTCGATTTTTATTATTCATTACCCTCCTCTTAATGATTGTTTTGCCCCACTATCAGAAAACAATTTGCTCCCACACAAAAACCCACCTTCTCAATTTTTGACAATATATTTGTTCCGATGCCCATACTGTGCGAGTCGTCGTCGATCGGTAGCTTGCGAACGGTTTTGTAGACACCGAGGTGCTGAAAATTAAGATGATGTCGTCGTGTGAACTTGAATTGTTTTTCATAACATAACACCTATAAGGTCATCAGTAGACAAAAAAATACAAGATTTGAAAAA</canonical>
            <polymorphic>GGGAATGTCAGAATTTTATGTGCTATTATTCCCATTTTAAAGCGAATTTTCGAGAGAAAAAAATTGATTTTTTCTCAGATTTTTTTTTCAAAAAATTTTGACCTTTTTAGGTTTTTCAACTATTTTTGATTTTTCCAAATTTTTTGTTGGAAATTTGACAGGATGGTTCGCGAAGATTACTGTAAAAAACCTTTCTACAGTAATCTACAATAATCTTCGCGAACGCCATCCTGTCAAATTTCAGACAAAAAACCGGAAAAATCGAAAAAGAATCTTTGAAAATAGCTGGAAAACCTGAAAATGTTTAAAAATTTCGCGAAAATCTGATGAAAAGTACTTTTTTTTTCGAAAAAATTGCTAATTTTTCGGAGTTTTCAGTAGTTCTCGGTGAGAAAATTCCAGAAGTTTCCAGAAATGGACGAGAAGCGATTTTTCAGGATTTGCCTTTTTTTTTTTGATTTTTTTGTTTCGATATGAATCTACATTTTTATATTTTCAGKGCCTGAAATTGAGCAATATCAAGTCTAATGACAAGATGACCATTTAGAACAAATTTTCAATCTAGTAAAATAGAAACTCACCCCATTTTCATCTAAAACATTGAACTGAAACATAATAGCTCAAGTGAAGAAATCAACCATCGTTTGTTTTAAGCCCACACTCTCGCTTCCGTCATCTGATAACACTTACATATGTTTCTTACTCGTCCATGTTTTTTGTCGATTTTTATTATTCATTACCCTCCTCTTAATGATTGTTTTGCCCCACTATCAGAAAACAATTTGCTCCCACACAAAAACCCACCTTCTCAATTTTTGACAATATATTTGTTCCGATGCCCATACTGTGCGAGTCGTCGTCGATCGGTAGCTTGCGAACGGTTTTGTAGACACCGAGGTGCTGAAAATTAAGATGATGTCGTCGTGTGAACTTGAATTGTTTTTCATAACATAACACCTATAAGGTCATCAGTAGACAAAAAAATACAAGATTTGAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>285 216 216 130 118 35</canonical_bands>
                <polymorphic_bands>334 285 216 130 35</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATGTGCTATTATTCCCATTTT</pcr_primer_p1>
		<pcr_primer_p2>TGGGGTGAGTTTCTATTTTACTA</pcr_primer_p2>
		<pcr_amplicon_size>570</pcr_amplicon_size>
		<canonical_amplicon>TTATGTGCTATTATTCCCATTTTAAAGCGAATTTTCGAGAGAAAAAAATTGATTTTTTCTCAGATTTTTTTTTCAAAAAATTTTGACCTTTTTAGGTTTTTCAACTATTTTTGATTTTTCCAAATTTTTTGTTGGAAATTTGACAGGATGGTTCGCGAAGATTACTGTAAAAAACCTTTCTACAGTAATCTACAATAATCTTCGCGAACGCCATCCTGTCAAATTTCAGACAAAAAACCGGAAAAATCGAAAAAGAATCTTTGAAAATAGCTGGAAAACCTGAAAATGTTTAAAAATTTCGCGAAAATCTGATGAAAAGTACTTTTTTTTTCGAAAAAATTGCTAATTTTTCGGAGTTTTCAGTAGTTCTCGGTGAGAAAATTCCAGAAGTTTCCAGAAATGGACGAGAAGCGATTTTTCAGGATTTGCCTTTTTTTTTTTGATTTTTTTGTTTCGATATGAATCTACATTTTTATATTTTCAGGGCCTGAAATTGAGCAATATCAAGTCTAATGACAAGATGACCATTTAGAACAAATTTTCAATCTAGTAAAATAGAAACTCACCCCA</canonical_amplicon>
		<polymorphic_amplicon>TTATGTGCTATTATTCCCATTTTAAAGCGAATTTTCGAGAGAAAAAAATTGATTTTTTCTCAGATTTTTTTTTCAAAAAATTTTGACCTTTTTAGGTTTTTCAACTATTTTTGATTTTTCCAAATTTTTTGTTGGAAATTTGACAGGATGGTTCGCGAAGATTACTGTAAAAAACCTTTCTACAGTAATCTACAATAATCTTCGCGAACGCCATCCTGTCAAATTTCAGACAAAAAACCGGAAAAATCGAAAAAGAATCTTTGAAAATAGCTGGAAAACCTGAAAATGTTTAAAAATTTCGCGAAAATCTGATGAAAAGTACTTTTTTTTTCGAAAAAATTGCTAATTTTTCGGAGTTTTCAGTAGTTCTCGGTGAGAAAATTCCAGAAGTTTCCAGAAATGGACGAGAAGCGATTTTTCAGGATTTGCCTTTTTTTTTTTGATTTTTTTGTTTCGATATGAATCTACATTTTTATATTTTCAGKGCCTGAAATTGAGCAATATCAAGTCTAATGACAAGATGACCATTTAGAACAAATTTTCAATCTAGTAAAATAGAAACTCACCCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4164</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>81623</contig_pos>
        <strand>+</strand>
        <context>TTAGAACAAA[A/T]TTTCAATCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAAATTGAGCAATATCAAGTCTAATGACAAGATGACCATTTAGAACAAA</left_flank>
        <right_flank>TTTCAATCTAGTAAAATAGAAACTCACCCCATTTTCATCTAAAACATTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAAAAAATTGATTTTTTCTCAGATTTTTTTTTCAAAAAATTTTGACCTTTTTAGGTTTTTCAACTATTTTTGATTTTTCCAAATTTTTTGTTGGAAATTTGACAGGATGGTTCGCGAAGATTACTGTAAAAAACCTTTCTACAGTAATCTACAATAATCTTCGCGAACGCCATCCTGTCAAATTTCAGACAAAAAACCGGAAAAATCGAAAAAGAATCTTTGAAAATAGCTGGAAAACCTGAAAATGTTTAAAAATTTCGCGAAAATCTGATGAAAAGTACTTTTTTTTTCGAAAAAATTGCTAATTTTTCGGAGTTTTCAGTAGTTCTCGGTGAGAAAATTCCAGAAGTTTCCAGAAATGGACGAGAAGCGATTTTTCAGGATTTGCCTTTTTTTTTTTGATTTTTTTGTTTCGATATGAATCTACATTTTTATATTTTCAGGGCCTGAAATTGAGCAATATCAAGTCTAATGACAAGATGACCATTTAGAACAAATTTTCAATCTAGTAAAATAGAAACTCACCCCATTTTCATCTAAAACATTGAACTGAAACATAATAGCTCAAGTGAAGAAATCAACCATCGTTTGTTTTAAGCCCACACTCTCGCTTCCGTCATCTGATAACACTTACATATGTTTCTTACTCGTCCATGTTTTTTGTCGATTTTTATTATTCATTACCCTCCTCTTAATGATTGTTTTGCCCCACTATCAGAAAACAATTTGCTCCCACACAAAAACCCACCTTCTCAATTTTTGACAATATATTTGTTCCGATGCCCATACTGTGCGAGTCGTCGTCGATCGGTAGCTTGCGAACGGTTTTGTAGACACCGAGGTGCTGAAAATTAAGATGATGTCGTCGTGTGAACTTGAATTGTTTTTCATAACATAACACCTATAAGGTCATCAGTAGACAAAAAAATACAAGATTTGAAAAAAAGATTGATGGGGTACGACGTTCATGATCAAAGAAGCAAAATCAGATGATGTTG</canonical>
            <polymorphic>AGAAAAAAATTGATTTTTTCTCAGATTTTTTTTTCAAAAAATTTTGACCTTTTTAGGTTTTTCAACTATTTTTGATTTTTCCAAATTTTTTGTTGGAAATTTGACAGGATGGTTCGCGAAGATTACTGTAAAAAACCTTTCTACAGTAATCTACAATAATCTTCGCGAACGCCATCCTGTCAAATTTCAGACAAAAAACCGGAAAAATCGAAAAAGAATCTTTGAAAATAGCTGGAAAACCTGAAAATGTTTAAAAATTTCGCGAAAATCTGATGAAAAGTACTTTTTTTTTCGAAAAAATTGCTAATTTTTCGGAGTTTTCAGTAGTTCTCGGTGAGAAAATTCCAGAAGTTTCCAGAAATGGACGAGAAGCGATTTTTCAGGATTTGCCTTTTTTTTTTTGATTTTTTTGTTTCGATATGAATCTACATTTTTATATTTTCAGGGCCTGAAATTGAGCAATATCAAGTCTAATGACAAGATGACCATTTAGAACAAAWTTTCAATCTAGTAAAATAGAAACTCACCCCATTTTCATCTAAAACATTGAACTGAAACATAATAGCTCAAGTGAAGAAATCAACCATCGTTTGTTTTAAGCCCACACTCTCGCTTCCGTCATCTGATAACACTTACATATGTTTCTTACTCGTCCATGTTTTTTGTCGATTTTTATTATTCATTACCCTCCTCTTAATGATTGTTTTGCCCCACTATCAGAAAACAATTTGCTCCCACACAAAAACCCACCTTCTCAATTTTTGACAATATATTTGTTCCGATGCCCATACTGTGCGAGTCGTCGTCGATCGGTAGCTTGCGAACGGTTTTGTAGACACCGAGGTGCTGAAAATTAAGATGATGTCGTCGTGTGAACTTGAATTGTTTTTCATAACATAACACCTATAAGGTCATCAGTAGACAAAAAAATACAAGATTTGAAAAAAAGATTGATGGGGTACGACGTTCATGATCAAAGAAGCAAAATCAGATGATGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>503 157 85 85 73 44 39 14</canonical_bands>
                <polymorphic_bands>660 85 85 73 44 39 14</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>228 120 112 95 85 73 45 44 43 35 32 31 29 14 7 7</canonical_bands>
                <polymorphic_bands>273 120 112 95 85 73 44 43 35 32 31 29 14 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTTCGATATGAATCTACATTTT</pcr_primer_p1>
		<pcr_primer_p2>AACATGGACGAGTAAGAAACATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTTTCGATATGAATCTACATTTTTATATTTTCAGGGCCTGAAATTGAGCAATATCAAGTCTAATGACAAGATGACCATTTAGAACAAATTTTCAATCTAGTAAAATAGAAACTCACCCCATTTTCATCTAAAACATTGAACTGAAACATAATAGCTCAAGTGAAGAAATCAACCATCGTTTGTTTTAAGCCCACACTCTCGCTTCCGTCATCTGATAACACTTACATATGTTTCTTACTCGTCCATGTT</canonical_amplicon>
		<polymorphic_amplicon>TGTTTCGATATGAATCTACATTTTTATATTTTCAGGGCCTGAAATTGAGCAATATCAAGTCTAATGACAAGATGACCATTTAGAACAAAWTTTCAATCTAGTAAAATAGAAACTCACCCCATTTTCATCTAAAACATTGAACTGAAACATAATAGCTCAAGTGAAGAAATCAACCATCGTTTGTTTTAAGCCCACACTCTCGCTTCCGTCATCTGATAACACTTACATATGTTTCTTACTCGTCCATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4165</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>81856</contig_pos>
        <strand>+</strand>
        <context>AACAATTTGC[A/T]CCCACACAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTACCCTCCTCTTAATGATTGTTTTGCCCCACTATCAGAAAACAATTTGC</left_flank>
        <right_flank>CCCACACAAAAACCCACCTTCTCAATTTTTGACAATATATTTGTTCCGAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAAACCTGAAAATGTTTAAAAATTTCGCGAAAATCTGATGAAAAGTACTTTTTTTTTCGAAAAAATTGCTAATTTTTCGGAGTTTTCAGTAGTTCTCGGTGAGAAAATTCCAGAAGTTTCCAGAAATGGACGAGAAGCGATTTTTCAGGATTTGCCTTTTTTTTTTTGATTTTTTTGTTTCGATATGAATCTACATTTTTATATTTTCAGGGCCTGAAATTGAGCAATATCAAGTCTAATGACAAGATGACCATTTAGAACAAATTTTCAATCTAGTAAAATAGAAACTCACCCCATTTTCATCTAAAACATTGAACTGAAACATAATAGCTCAAGTGAAGAAATCAACCATCGTTTGTTTTAAGCCCACACTCTCGCTTCCGTCATCTGATAACACTTACATATGTTTCTTACTCGTCCATGTTTTTTGTCGATTTTTATTATTCATTACCCTCCTCTTAATGATTGTTTTGCCCCACTATCAGAAAACAATTTGCTCCCACACAAAAACCCACCTTCTCAATTTTTGACAATATATTTGTTCCGATGCCCATACTGTGCGAGTCGTCGTCGATCGGTAGCTTGCGAACGGTTTTGTAGACACCGAGGTGCTGAAAATTAAGATGATGTCGTCGTGTGAACTTGAATTGTTTTTCATAACATAACACCTATAAGGTCATCAGTAGACAAAAAAATACAAGATTTGAAAAAAAGATTGATGGGGTACGACGTTCATGATCAAAGAAGCAAAATCAGATGATGTTGCACTAGTGACGTTTAGGCGTCTTTAGATTCTAATCATTAGAATTTAAAGGTGTTAAGGTAATACTTTGAGTGGGAGGAGTCCGGAACCCCGATTGAGGTTTGCTCTTGTCTAGGAGAAAAAATATCGTTCGAGAAAATCTGAATTATTTAAAAACGATATTCTCTCTTCTGGAGCACGCCATCGTTGACGTCAGGCAAACCGTTCGTTCTCTCTAGTTAATCCGATTGAAGAG</canonical>
            <polymorphic>GGAAAACCTGAAAATGTTTAAAAATTTCGCGAAAATCTGATGAAAAGTACTTTTTTTTTCGAAAAAATTGCTAATTTTTCGGAGTTTTCAGTAGTTCTCGGTGAGAAAATTCCAGAAGTTTCCAGAAATGGACGAGAAGCGATTTTTCAGGATTTGCCTTTTTTTTTTTGATTTTTTTGTTTCGATATGAATCTACATTTTTATATTTTCAGGGCCTGAAATTGAGCAATATCAAGTCTAATGACAAGATGACCATTTAGAACAAATTTTCAATCTAGTAAAATAGAAACTCACCCCATTTTCATCTAAAACATTGAACTGAAACATAATAGCTCAAGTGAAGAAATCAACCATCGTTTGTTTTAAGCCCACACTCTCGCTTCCGTCATCTGATAACACTTACATATGTTTCTTACTCGTCCATGTTTTTTGTCGATTTTTATTATTCATTACCCTCCTCTTAATGATTGTTTTGCCCCACTATCAGAAAACAATTTGCWCCCACACAAAAACCCACCTTCTCAATTTTTGACAATATATTTGTTCCGATGCCCATACTGTGCGAGTCGTCGTCGATCGGTAGCTTGCGAACGGTTTTGTAGACACCGAGGTGCTGAAAATTAAGATGATGTCGTCGTGTGAACTTGAATTGTTTTTCATAACATAACACCTATAAGGTCATCAGTAGACAAAAAAATACAAGATTTGAAAAAAAGATTGATGGGGTACGACGTTCATGATCAAAGAAGCAAAATCAGATGATGTTGCACTAGTGACGTTTAGGCGTCTTTAGATTCTAATCATTAGAATTTAAAGGTGTTAAGGTAATACTTTGAGTGGGAGGAGTCCGGAACCCCGATTGAGGTTTGCTCTTGTCTAGGAGAAAAAATATCGTTCGAGAAAATCTGAATTATTTAAAAACGATATTCTCTCTTCTGGAGCACGCCATCGTTGACGTCAGGCAAACCGTTCGTTCTCTCTAGTTAATCCGATTGAAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGTCATCTGATAACACTTACAT</pcr_primer_p1>
		<pcr_primer_p2>GACATCATCTTAATTTTCAGCAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCGTCATCTGATAACACTTACATATGTTTCTTACTCGTCCATGTTTTTTGTCGATTTTTATTATTCATTACCCTCCTCTTAATGATTGTTTTGCCCCACTATCAGAAAACAATTTGCTCCCACACAAAAACCCACCTTCTCAATTTTTGACAATATATTTGTTCCGATGCCCATACTGTGCGAGTCGTCGTCGATCGGTAGCTTGCGAACGGTTTTGTAGACACCGAGGTGCTGAAAATTAAGATGATGTC</canonical_amplicon>
		<polymorphic_amplicon>CCGTCATCTGATAACACTTACATATGTTTCTTACTCGTCCATGTTTTTTGTCGATTTTTATTATTCATTACCCTCCTCTTAATGATTGTTTTGCCCCACTATCAGAAAACAATTTGCWCCCACACAAAAACCCACCTTCTCAATTTTTGACAATATATTTGTTCCGATGCCCATACTGTGCGAGTCGTCGTCGATCGGTAGCTTGCGAACGGTTTTGTAGACACCGAGGTGCTGAAAATTAAGATGATGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4166</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>85094</contig_pos>
        <strand></strand>
        <context>GAATGTTTCA[A/G]RCAAACTGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTCATTTTTGTCGTCAAGCCAAACAATCTCCGAAATTGGAATGTTTCA</left_flank>
        <right_flank>TCAAACTGTAATCTCCTTTTCTAAAGATGACGTTTTCTGTTGCATGTAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCACTAAATTTTTAAAATTTCCATTGCAGATGAATTTGTTTTCATAAACAAAGAGAACGAAAGTTGAAACAGAGGAAATTAAAGAAAAATTATAGACTGCGAGCTGCAACTGGTTGAGAATTGTTCAACGGATCGTCGTTGTAATTATCATCAAATACGGCTAACAGCTAACAGTTCCAGCAGAAGTGTGACCTGAATAACTGAAAGATTTTAGTAAGTCATCTGACTGAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTTTTATTTATAAATAGAATCCTTTGGGATTACGGTATACCAAGCGGAAACGAGAGATTTTTATAGATCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAATAAAATTATAAAAGTTCATGTGATGAATTCATTTTTGTCGTCAAGCCAAACAATCTCCGAAATTGGAATGTTTCAATCAAACTGTAATCTCCTTTTCTAAAGATGACGTTTTCTGTTGCATGTAGTCAGATTTATTGAACAGCTCTTTAGAATACAAGTCACATCTCCCACATTTTTCCATGAACAACTCCTGAATAGTAGAACTCATTTTTAAACTGTAGCCAAGTTTTTTTTCAATTATCTCGATTCCTATGAAAGATATCAAAAATGTTGCAACTGATAAAATATTGTTGATATTATGATGAACAATTTCTCAGTTGACAAGTTTTTTATATCTTTCCCAAGAATCGAGATAATTGAGTTGAAAGTTGACGGTTTGGGTGAGCTTCTATAATACCAAATGGGCTAAATTTCGTTGTTACACTGTCACAAAGCTTACACAAAGTCTCCACTTTAAGGCCAATTATCTTGATTCCTATGAAAGATATCAAAAATGTTTCAACTGATAAATTGTTTATCATAATGTCAACAATATTTTACTAGTTTATAAACTTTTGATATCTTTCACAGGAATAG</canonical>
            <polymorphic>AATCACTAAATTTTTAAAATTTCCATTGCAGATGAATTTGTTTTCATAAACAAAGAGAACGAAAGTTGAAACAGAGGAAATTAAAGAAAAATTATAGACTGCGAGCTGCAACTGGTTGAGAATTGTTCAACGGATCGTCGTTGTAATTATCATCAAATACGGCTAACAGCTAACAGTTCCAGCAGAAGTGTGACCTGAATAACTGAAAGATTTTAGTAAGTCATCTGACTGAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTTTTATTTATAAATAGAATCCTTTGGGATTACGGTATACCAAGCGGAAACGAGAGATTTTTATAGATCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAATAAAATTATAAAAGTTCATGTGATGAATTCATTTTTGTCGTCAAGCCAAACAATCTCCGAAATTGGAATGTTTCARTCAAACTGTAATCTCCTTTTCTAAAGATGACGTTTTCTGTTGCATGTAGTCAGATTTATTGAACAGCTCTTTAGAATACAAGTCACATCTCCCACATTTTTCCATGAACAACTCCTGAATAGTAGAACTCATTTTTAAACTGTAGCCAAGTTTTTTTTCAATTATCTCGATTCCTATGAAAGATATCAAAAATGTTGCAACTGATAAAATATTGTTGATATTATGATGAACAATTTCTCAGTTGACAAGTTTTTTATATCTTTCCCAAGAATCGAGATAATTGAGTTGAAAGTTGACGGTTTGGGTGAGCTTCTATAATACCAAATGGGCTAAATTTCGTTGTTACACTGTCACAAAGCTTACACAAAGTCTCCACTTTAAGGCCAATTATCTTGATTCCTATGAAAGATATCAAAAATGTTTCAACTGATAAATTGTTTATCATAATGTCAACAATATTTTACTAGTTTATAAACTTTTGATATCTTTCACAGGAATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAACTCTTACTAGGGACAAGAA</pcr_primer_p1>
		<pcr_primer_p2>GGGAGATGTGACTTGTATTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAATAAAATTATAAAAGTTCATGTGATGAATTCATTTTTGTCGTCAAGCCAAACAATCTCCGAAATTGGAATGTTTCAATCAAACTGTAATCTCCTTTTCTAAAGATGACGTTTTCTGTTGCATGTAGTCAGATTTATTGAACAGCTCTTTAGAATACAAGTCACATCTCCC</canonical_amplicon>
		<polymorphic_amplicon>TCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAATAAAATTATAAAAGTTCATGTGATGAATTCATTTTTGTCGTCAAGCCAAACAATCTCCGAAATTGGAATGTTTCARTCAAACTGTAATCTCCTTTTCTAAAGATGACGTTTTCTGTTGCATGTAGTCAGATTTATTGAACAGCTCTTTAGAATACAAGTCACATCTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4167</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>85063</contig_pos>
        <strand>+</strand>
        <context>TTGTCGTCAA[A/G]CCAAACAATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGGAATAAAATTATAAAAGTTCATGTGATGAATTCATTTTTGTCGTCAA</left_flank>
        <right_flank>CCAAACAATCTCCGAAATTGGAATGTTTCAATCAAACTGTAATCTCCTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATACATCCTGAATTTTTGTTTCACAGTAATAATCACTAAATTTTTAAAATTTCCATTGCAGATGAATTTGTTTTCATAAACAAAGAGAACGAAAGTTGAAACAGAGGAAATTAAAGAAAAATTATAGACTGCGAGCTGCAACTGGTTGAGAATTGTTCAACGGATCGTCGTTGTAATTATCATCAAATACGGCTAACAGCTAACAGTTCCAGCAGAAGTGTGACCTGAATAACTGAAAGATTTTAGTAAGTCATCTGACTGAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTTTTATTTATAAATAGAATCCTTTGGGATTACGGTATACCAAGCGGAAACGAGAGATTTTTATAGATCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAATAAAATTATAAAAGTTCATGTGATGAATTCATTTTTGTCGTCAAGCCAAACAATCTCCGAAATTGGAATGTTTCAATCAAACTGTAATCTCCTTTTCTAAAGATGACGTTTTCTGTTGCATGTAGTCAGATTTATTGAACAGCTCTTTAGAATACAAGTCACATCTCCCACATTTTTCCATGAACAACTCCTGAATAGTAGAACTCATTTTTAAACTGTAGCCAAGTTTTTTTTCAATTATCTCGATTCCTATGAAAGATATCAAAAATGTTGCAACTGATAAAATATTGTTGATATTATGATGAACAATTTCTCAGTTGACAAGTTTTTTATATCTTTCCCAAGAATCGAGATAATTGAGTTGAAAGTTGACGGTTTGGGTGAGCTTCTATAATACCAAATGGGCTAAATTTCGTTGTTACACTGTCACAAAGCTTACACAAAGTCTCCACTTTAAGGCCAATTATCTTGATTCCTATGAAAGATATCAAAAATGTTTCAACTGATAAATTGTTTATCATAATGTCAACAATATTTTACTAGTT</canonical>
            <polymorphic>CATACATCCTGAATTTTTGTTTCACAGTAATAATCACTAAATTTTTAAAATTTCCATTGCAGATGAATTTGTTTTCATAAACAAAGAGAACGAAAGTTGAAACAGAGGAAATTAAAGAAAAATTATAGACTGCGAGCTGCAACTGGTTGAGAATTGTTCAACGGATCGTCGTTGTAATTATCATCAAATACGGCTAACAGCTAACAGTTCCAGCAGAAGTGTGACCTGAATAACTGAAAGATTTTAGTAAGTCATCTGACTGAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTTTTATTTATAAATAGAATCCTTTGGGATTACGGTATACCAAGCGGAAACGAGAGATTTTTATAGATCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAATAAAATTATAAAAGTTCATGTGATGAATTCATTTTTGTCGTCAARCCAAACAATCTCCGAAATTGGAATGTTTCAATCAAACTGTAATCTCCTTTTCTAAAGATGACGTTTTCTGTTGCATGTAGTCAGATTTATTGAACAGCTCTTTAGAATACAAGTCACATCTCCCACATTTTTCCATGAACAACTCCTGAATAGTAGAACTCATTTTTAAACTGTAGCCAAGTTTTTTTTCAATTATCTCGATTCCTATGAAAGATATCAAAAATGTTGCAACTGATAAAATATTGTTGATATTATGATGAACAATTTCTCAGTTGACAAGTTTTTTATATCTTTCCCAAGAATCGAGATAATTGAGTTGAAAGTTGACGGTTTGGGTGAGCTTCTATAATACCAAATGGGCTAAATTTCGTTGTTACACTGTCACAAAGCTTACACAAAGTCTCCACTTTAAGGCCAATTATCTTGATTCCTATGAAAGATATCAAAAATGTTTCAACTGATAAATTGTTTATCATAATGTCAACAATATTTTACTAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>300 164 136 97 86 79 57 29 25 20 7</canonical_bands>
                <polymorphic_bands>397 164 136 86 79 57 29 25 20 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAACTCTTACTAGGGACAAGAA</pcr_primer_p1>
		<pcr_primer_p2>GGGAGATGTGACTTGTATTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAATAAAATTATAAAAGTTCATGTGATGAATTCATTTTTGTCGTCAAGCCAAACAATCTCCGAAATTGGAATGTTTCAATCAAACTGTAATCTCCTTTTCTAAAGATGACGTTTTCTGTTGCATGTAGTCAGATTTATTGAACAGCTCTTTAGAATACAAGTCACATCTCCC</canonical_amplicon>
		<polymorphic_amplicon>TCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAATAAAATTATAAAAGTTCATGTGATGAATTCATTTTTGTCGTCAARCCAAACAATCTCCGAAATTGGAATGTTTCAATCAAACTGTAATCTCCTTTTCTAAAGATGACGTTTTCTGTTGCATGTAGTCAGATTTATTGAACAGCTCTTTAGAATACAAGTCACATCTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4168</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>84933</contig_pos>
        <strand>+</strand>
        <context>CGAGAGATTT[G/T]TATAGATCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAAATAGAATCCTTTGGGATTACGGTATACCAAGCGGAAACGAGAGATTT</left_flank>
        <right_flank>TATAGATCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGGCTTCAGAAAATTGGGTCGACTCGGTCATTCTTCGCCACGCAGAGAAAATGTTCTCATCAGTTCAGTTCCGTCTCTACCGTATGCTTCAGTCTCCCGGGTCGCTGCACAATTCTGGGTGCACTTTGCATACATCCTGAATTTTTGTTTCACAGTAATAATCACTAAATTTTTAAAATTTCCATTGCAGATGAATTTGTTTTCATAAACAAAGAGAACGAAAGTTGAAACAGAGGAAATTAAAGAAAAATTATAGACTGCGAGCTGCAACTGGTTGAGAATTGTTCAACGGATCGTCGTTGTAATTATCATCAAATACGGCTAACAGCTAACAGTTCCAGCAGAAGTGTGACCTGAATAACTGAAAGATTTTAGTAAGTCATCTGACTGAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTTTTATTTATAAATAGAATCCTTTGGGATTACGGTATACCAAGCGGAAACGAGAGATTTTTATAGATCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAATAAAATTATAAAAGTTCATGTGATGAATTCATTTTTGTCGTCAAGCCAAACAATCTCCGAAATTGGAATGTTTCAATCAAACTGTAATCTCCTTTTCTAAAGATGACGTTTTCTGTTGCATGTAGTCAGATTTATTGAACAGCTCTTTAGAATACAAGTCACATCTCCCACATTTTTCCATGAACAACTCCTGAATAGTAGAACTCATTTTTAAACTGTAGCCAAGTTTTTTTTCAATTATCTCGATTCCTATGAAAGATATCAAAAATGTTGCAACTGATAAAATATTGTTGATATTATGATGAACAATTTCTCAGTTGACAAGTTTTTTATATCTTTCCCAAGAATCGAGATAATTGAGTTGAAAGTTGACGGTTTGGGTGAGCTTCTATAATACCAAATGGGCTAAATTTCG</canonical>
            <polymorphic>ATTGGCTTCAGAAAATTGGGTCGACTCGGTCATTCTTCGCCACGCAGAGAAAATGTTCTCATCAGTTCAGTTCCGTCTCTACCGTATGCTTCAGTCTCCCGGGTCGCTGCACAATTCTGGGTGCACTTTGCATACATCCTGAATTTTTGTTTCACAGTAATAATCACTAAATTTTTAAAATTTCCATTGCAGATGAATTTGTTTTCATAAACAAAGAGAACGAAAGTTGAAACAGAGGAAATTAAAGAAAAATTATAGACTGCGAGCTGCAACTGGTTGAGAATTGTTCAACGGATCGTCGTTGTAATTATCATCAAATACGGCTAACAGCTAACAGTTCCAGCAGAAGTGTGACCTGAATAACTGAAAGATTTTAGTAAGTCATCTGACTGAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTTTTATTTATAAATAGAATCCTTTGGGATTACGGTATACCAAGCGGAAACGAGAGATTTKTATAGATCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAATAAAATTATAAAAGTTCATGTGATGAATTCATTTTTGTCGTCAAGCCAAACAATCTCCGAAATTGGAATGTTTCAATCAAACTGTAATCTCCTTTTCTAAAGATGACGTTTTCTGTTGCATGTAGTCAGATTTATTGAACAGCTCTTTAGAATACAAGTCACATCTCCCACATTTTTCCATGAACAACTCCTGAATAGTAGAACTCATTTTTAAACTGTAGCCAAGTTTTTTTTCAATTATCTCGATTCCTATGAAAGATATCAAAAATGTTGCAACTGATAAAATATTGTTGATATTATGATGAACAATTTCTCAGTTGACAAGTTTTTTATATCTTTCCCAAGAATCGAGATAATTGAGTTGAAAGTTGACGGTTTGGGTGAGCTTCTATAATACCAAATGGGCTAAATTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGTGTGACCTGAATAACTGA</pcr_primer_p1>
		<pcr_primer_p2>TTCCTTCTGAAAGTCTATAACAAA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>AGAAGTGTGACCTGAATAACTGAAAGATTTTAGTAAGTCATCTGACTGAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTTTTATTTATAAATAGAATCCTTTGGGATTACGGTATACCAAGCGGAAACGAGAGATTTTTATAGATCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAA</canonical_amplicon>
		<polymorphic_amplicon>AGAAGTGTGACCTGAATAACTGAAAGATTTTAGTAAGTCATCTGACTGAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTTTTATTTATAAATAGAATCCTTTGGGATTACGGTATACCAAGCGGAAACGAGAGATTTKTATAGATCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4169</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>84910</contig_pos>
        <strand>+</strand>
        <context>GATTACGGTA[G/T]ACCAAGCGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTGTCTGCTTCATTTTTATTTATAAATAGAATCCTTTGGGATTACGGTA</left_flank>
        <right_flank>ACCAAGCGGAAACGAGAGATTTTTATAGATCAACTCTTACTAGGGACAAG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAGAAATCTATCACTCAAAATATTGGCTTCAGAAAATTGGGTCGACTCGGTCATTCTTCGCCACGCAGAGAAAATGTTCTCATCAGTTCAGTTCCGTCTCTACCGTATGCTTCAGTCTCCCGGGTCGCTGCACAATTCTGGGTGCACTTTGCATACATCCTGAATTTTTGTTTCACAGTAATAATCACTAAATTTTTAAAATTTCCATTGCAGATGAATTTGTTTTCATAAACAAAGAGAACGAAAGTTGAAACAGAGGAAATTAAAGAAAAATTATAGACTGCGAGCTGCAACTGGTTGAGAATTGTTCAACGGATCGTCGTTGTAATTATCATCAAATACGGCTAACAGCTAACAGTTCCAGCAGAAGTGTGACCTGAATAACTGAAAGATTTTAGTAAGTCATCTGACTGAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTTTTATTTATAAATAGAATCCTTTGGGATTACGGTATACCAAGCGGAAACGAGAGATTTTTATAGATCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAATAAAATTATAAAAGTTCATGTGATGAATTCATTTTTGTCGTCAAGCCAAACAATCTCCGAAATTGGAATGTTTCAATCAAACTGTAATCTCCTTTTCTAAAGATGACGTTTTCTGTTGCATGTAGTCAGATTTATTGAACAGCTCTTTAGAATACAAGTCACATCTCCCACATTTTTCCATGAACAACTCCTGAATAGTAGAACTCATTTTTAAACTGTAGCCAAGTTTTTTTTCAATTATCTCGATTCCTATGAAAGATATCAAAAATGTTGCAACTGATAAAATATTGTTGATATTATGATGAACAATTTCTCAGTTGACAAGTTTTTTATATCTTTCCCAAGAATCGAGATAATTGAGTTGAAAGTTGACGGTTTGGGTGAGCTTCTAT</canonical>
            <polymorphic>TTCAGAAATCTATCACTCAAAATATTGGCTTCAGAAAATTGGGTCGACTCGGTCATTCTTCGCCACGCAGAGAAAATGTTCTCATCAGTTCAGTTCCGTCTCTACCGTATGCTTCAGTCTCCCGGGTCGCTGCACAATTCTGGGTGCACTTTGCATACATCCTGAATTTTTGTTTCACAGTAATAATCACTAAATTTTTAAAATTTCCATTGCAGATGAATTTGTTTTCATAAACAAAGAGAACGAAAGTTGAAACAGAGGAAATTAAAGAAAAATTATAGACTGCGAGCTGCAACTGGTTGAGAATTGTTCAACGGATCGTCGTTGTAATTATCATCAAATACGGCTAACAGCTAACAGTTCCAGCAGAAGTGTGACCTGAATAACTGAAAGATTTTAGTAAGTCATCTGACTGAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTTTTATTTATAAATAGAATCCTTTGGGATTACGGTAKACCAAGCGGAAACGAGAGATTTTTATAGATCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAATAAAATTATAAAAGTTCATGTGATGAATTCATTTTTGTCGTCAAGCCAAACAATCTCCGAAATTGGAATGTTTCAATCAAACTGTAATCTCCTTTTCTAAAGATGACGTTTTCTGTTGCATGTAGTCAGATTTATTGAACAGCTCTTTAGAATACAAGTCACATCTCCCACATTTTTCCATGAACAACTCCTGAATAGTAGAACTCATTTTTAAACTGTAGCCAAGTTTTTTTTCAATTATCTCGATTCCTATGAAAGATATCAAAAATGTTGCAACTGATAAAATATTGTTGATATTATGATGAACAATTTCTCAGTTGACAAGTTTTTTATATCTTTCCCAAGAATCGAGATAATTGAGTTGAAAGTTGACGGTTTGGGTGAGCTTCTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 454 44</canonical_bands>
                <polymorphic_bands>956 44</polymorphic_bands>
            </assay>
            <assay>
                <site>GTATAC</site>
                <isoschizomers>
                    <enzyme>BssNAI</enzyme>
                    <enzyme>Bst1107I</enzyme>
                    <enzyme>BstZ17I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAGTGTGACCTGAATAACTGA</pcr_primer_p1>
		<pcr_primer_p2>TTCCTTCTGAAAGTCTATAACAAA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>AGAAGTGTGACCTGAATAACTGAAAGATTTTAGTAAGTCATCTGACTGAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTTTTATTTATAAATAGAATCCTTTGGGATTACGGTATACCAAGCGGAAACGAGAGATTTTTATAGATCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAA</canonical_amplicon>
		<polymorphic_amplicon>AGAAGTGTGACCTGAATAACTGAAAGATTTTAGTAAGTCATCTGACTGAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTTTTATTTATAAATAGAATCCTTTGGGATTACGGTAKACCAAGCGGAAACGAGAGATTTTTATAGATCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4170</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>84848</contig_pos>
        <strand></strand>
        <context>AAAACTTTCA[A/G]ATTTTTCTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAAGATTTTAGTAAGTCATCTGACTGAATTTTTTATTGAAAACTTTCA</left_flank>
        <right_flank>ATTTTTCTTCATTTGTCTGCTTCATTTTTATTTATAAATAGAATCCTTTG</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGCCATTGAATAAAAAGAAAAACACATTGGATAAGAAGAACTTGAAAAATTGGGCTTTTCATTCAGAAATCTATCACTCAAAATATTGGCTTCAGAAAATTGGGTCGACTCGGTCATTCTTCGCCACGCAGAGAAAATGTTCTCATCAGTTCAGTTCCGTCTCTACCGTATGCTTCAGTCTCCCGGGTCGCTGCACAATTCTGGGTGCACTTTGCATACATCCTGAATTTTTGTTTCACAGTAATAATCACTAAATTTTTAAAATTTCCATTGCAGATGAATTTGTTTTCATAAACAAAGAGAACGAAAGTTGAAACAGAGGAAATTAAAGAAAAATTATAGACTGCGAGCTGCAACTGGTTGAGAATTGTTCAACGGATCGTCGTTGTAATTATCATCAAATACGGCTAACAGCTAACAGTTCCAGCAGAAGTGTGACCTGAATAACTGAAAGATTTTAGTAAGTCATCTGACTGAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTTTTATTTATAAATAGAATCCTTTGGGATTACGGTATACCAAGCGGAAACGAGAGATTTTTATAGATCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAATAAAATTATAAAAGTTCATGTGATGAATTCATTTTTGTCGTCAAGCCAAACAATCTCCGAAATTGGAATGTTTCAATCAAACTGTAATCTCCTTTTCTAAAGATGACGTTTTCTGTTGCATGTAGTCAGATTTATTGAACAGCTCTTTAGAATACAAGTCACATCTCCCACATTTTTCCATGAACAACTCCTGAATAGTAGAACTCATTTTTAAACTGTAGCCAAGTTTTTTTTCAATTATCTCGATTCCTATGAAAGATATCAAAAATGTTGCAACTGATAAAATATTGTTGATATTATGATGAACAATTTCTCAGTTGACAAGTTTTT</canonical>
            <polymorphic>CAGCCATTGAATAAAAAGAAAAACACATTGGATAAGAAGAACTTGAAAAATTGGGCTTTTCATTCAGAAATCTATCACTCAAAATATTGGCTTCAGAAAATTGGGTCGACTCGGTCATTCTTCGCCACGCAGAGAAAATGTTCTCATCAGTTCAGTTCCGTCTCTACCGTATGCTTCAGTCTCCCGGGTCGCTGCACAATTCTGGGTGCACTTTGCATACATCCTGAATTTTTGTTTCACAGTAATAATCACTAAATTTTTAAAATTTCCATTGCAGATGAATTTGTTTTCATAAACAAAGAGAACGAAAGTTGAAACAGAGGAAATTAAAGAAAAATTATAGACTGCGAGCTGCAACTGGTTGAGAATTGTTCAACGGATCGTCGTTGTAATTATCATCAAATACGGCTAACAGCTAACAGTTCCAGCAGAAGTGTGACCTGAATAACTGAAAGATTTTAGTAAGTCATCTGACTGAATTTTTTATTGAAAACTTTCARATTTTTCTTCATTTGTCTGCTTCATTTTTATTTATAAATAGAATCCTTTGGGATTACGGTATACCAAGCGGAAACGAGAGATTTTTATAGATCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAATAAAATTATAAAAGTTCATGTGATGAATTCATTTTTGTCGTCAAGCCAAACAATCTCCGAAATTGGAATGTTTCAATCAAACTGTAATCTCCTTTTCTAAAGATGACGTTTTCTGTTGCATGTAGTCAGATTTATTGAACAGCTCTTTAGAATACAAGTCACATCTCCCACATTTTTCCATGAACAACTCCTGAATAGTAGAACTCATTTTTAAACTGTAGCCAAGTTTTTTTTCAATTATCTCGATTCCTATGAAAGATATCAAAAATGTTGCAACTGATAAAATATTGTTGATATTATGATGAACAATTTCTCAGTTGACAAGTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>305 226 197 196 28 22 17 9</canonical_bands>
                <polymorphic_bands>305 226 218 197 28 17 9</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>175 174 99 87 72 50 48 44 35 31 29 28 24 23 22 22 17 11 9</canonical_bands>
                <polymorphic_bands>196 175 99 87 72 50 48 44 35 31 29 28 24 23 22 17 11 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAGTGTGACCTGAATAACTGA</pcr_primer_p1>
		<pcr_primer_p2>TTCCTTCTGAAAGTCTATAACAAA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>AGAAGTGTGACCTGAATAACTGAAAGATTTTAGTAAGTCATCTGACTGAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTTTTATTTATAAATAGAATCCTTTGGGATTACGGTATACCAAGCGGAAACGAGAGATTTTTATAGATCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAA</canonical_amplicon>
		<polymorphic_amplicon>AGAAGTGTGACCTGAATAACTGAAAGATTTTAGTAAGTCATCTGACTGAATTTTTTATTGAAAACTTTCARATTTTTCTTCATTTGTCTGCTTCATTTTTATTTATAAATAGAATCCTTTGGGATTACGGTATACCAAGCGGAAACGAGAGATTTTTATAGATCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4171</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>84825</contig_pos>
        <strand></strand>
        <context>TCATCTGACT[G/A]AATTTTTTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGCAGAAGTGTGACCTGAATAACTGAAAGATTTTAGTAAGTCATCTGACT</left_flank>
        <right_flank>AATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTT</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTGAAAATTCTCGACTTCTATCAGCCATTGAATAAAAAGAAAAACACATTGGATAAGAAGAACTTGAAAAATTGGGCTTTTCATTCAGAAATCTATCACTCAAAATATTGGCTTCAGAAAATTGGGTCGACTCGGTCATTCTTCGCCACGCAGAGAAAATGTTCTCATCAGTTCAGTTCCGTCTCTACCGTATGCTTCAGTCTCCCGGGTCGCTGCACAATTCTGGGTGCACTTTGCATACATCCTGAATTTTTGTTTCACAGTAATAATCACTAAATTTTTAAAATTTCCATTGCAGATGAATTTGTTTTCATAAACAAAGAGAACGAAAGTTGAAACAGAGGAAATTAAAGAAAAATTATAGACTGCGAGCTGCAACTGGTTGAGAATTGTTCAACGGATCGTCGTTGTAATTATCATCAAATACGGCTAACAGCTAACAGTTCCAGCAGAAGTGTGACCTGAATAACTGAAAGATTTTAGTAAGTCATCTGACTGAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTTTTATTTATAAATAGAATCCTTTGGGATTACGGTATACCAAGCGGAAACGAGAGATTTTTATAGATCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAATAAAATTATAAAAGTTCATGTGATGAATTCATTTTTGTCGTCAAGCCAAACAATCTCCGAAATTGGAATGTTTCAATCAAACTGTAATCTCCTTTTCTAAAGATGACGTTTTCTGTTGCATGTAGTCAGATTTATTGAACAGCTCTTTAGAATACAAGTCACATCTCCCACATTTTTCCATGAACAACTCCTGAATAGTAGAACTCATTTTTAAACTGTAGCCAAGTTTTTTTTCAATTATCTCGATTCCTATGAAAGATATCAAAAATGTTGCAACTGATAAAATATTGTTGATATTATGATGAAC</canonical>
            <polymorphic>TTGTGAAAATTCTCGACTTCTATCAGCCATTGAATAAAAAGAAAAACACATTGGATAAGAAGAACTTGAAAAATTGGGCTTTTCATTCAGAAATCTATCACTCAAAATATTGGCTTCAGAAAATTGGGTCGACTCGGTCATTCTTCGCCACGCAGAGAAAATGTTCTCATCAGTTCAGTTCCGTCTCTACCGTATGCTTCAGTCTCCCGGGTCGCTGCACAATTCTGGGTGCACTTTGCATACATCCTGAATTTTTGTTTCACAGTAATAATCACTAAATTTTTAAAATTTCCATTGCAGATGAATTTGTTTTCATAAACAAAGAGAACGAAAGTTGAAACAGAGGAAATTAAAGAAAAATTATAGACTGCGAGCTGCAACTGGTTGAGAATTGTTCAACGGATCGTCGTTGTAATTATCATCAAATACGGCTAACAGCTAACAGTTCCAGCAGAAGTGTGACCTGAATAACTGAAAGATTTTAGTAAGTCATCTGACTRAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTTTTATTTATAAATAGAATCCTTTGGGATTACGGTATACCAAGCGGAAACGAGAGATTTTTATAGATCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAATAAAATTATAAAAGTTCATGTGATGAATTCATTTTTGTCGTCAAGCCAAACAATCTCCGAAATTGGAATGTTTCAATCAAACTGTAATCTCCTTTTCTAAAGATGACGTTTTCTGTTGCATGTAGTCAGATTTATTGAACAGCTCTTTAGAATACAAGTCACATCTCCCACATTTTTCCATGAACAACTCCTGAATAGTAGAACTCATTTTTAAACTGTAGCCAAGTTTTTTTTCAATTATCTCGATTCCTATGAAAGATATCAAAAATGTTGCAACTGATAAAATATTGTTGATATTATGATGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>282 242 197 196 28 22 17 9 7</canonical_bands>
                <polymorphic_bands>282 242 219 196 28 17 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCATAAACAAAGAGAACGAAAG</pcr_primer_p1>
		<pcr_primer_p2>AATAAAAATGAAGCAGACAAATG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTCATAAACAAAGAGAACGAAAGTTGAAACAGAGGAAATTAAAGAAAAATTATAGACTGCGAGCTGCAACTGGTTGAGAATTGTTCAACGGATCGTCGTTGTAATTATCATCAAATACGGCTAACAGCTAACAGTTCCAGCAGAAGTGTGACCTGAATAACTGAAAGATTTTAGTAAGTCATCTGACTGAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTTTTATT</canonical_amplicon>
		<polymorphic_amplicon>TTCATAAACAAAGAGAACGAAAGTTGAAACAGAGGAAATTAAAGAAAAATTATAGACTGCGAGCTGCAACTGGTTGAGAATTGTTCAACGGATCGTCGTTGTAATTATCATCAAATACGGCTAACAGCTAACAGTTCCAGCAGAAGTGTGACCTGAATAACTGAAAGATTTTAGTAAGTCATCTGACTRAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTTTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4172</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>84807</contig_pos>
        <strand>+</strand>
        <context>CTGAAAGATT[A/T]TAGTAARTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTAACAGCTAACAGTTCCAGCAGAAGTGTGACCTGAATAACTGAAAGATT</left_flank>
        <right_flank>TAGTAAGTCATCTGACTGAATTTTTTATTGAAAACTTTCAAATTTTTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAAAATAGTTAAAAATTTGTGAAAATTCTCGACTTCTATCAGCCATTGAATAAAAAGAAAAACACATTGGATAAGAAGAACTTGAAAAATTGGGCTTTTCATTCAGAAATCTATCACTCAAAATATTGGCTTCAGAAAATTGGGTCGACTCGGTCATTCTTCGCCACGCAGAGAAAATGTTCTCATCAGTTCAGTTCCGTCTCTACCGTATGCTTCAGTCTCCCGGGTCGCTGCACAATTCTGGGTGCACTTTGCATACATCCTGAATTTTTGTTTCACAGTAATAATCACTAAATTTTTAAAATTTCCATTGCAGATGAATTTGTTTTCATAAACAAAGAGAACGAAAGTTGAAACAGAGGAAATTAAAGAAAAATTATAGACTGCGAGCTGCAACTGGTTGAGAATTGTTCAACGGATCGTCGTTGTAATTATCATCAAATACGGCTAACAGCTAACAGTTCCAGCAGAAGTGTGACCTGAATAACTGAAAGATTTTAGTAAGTCATCTGACTGAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTTTTATTTATAAATAGAATCCTTTGGGATTACGGTATACCAAGCGGAAACGAGAGATTTTTATAGATCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAATAAAATTATAAAAGTTCATGTGATGAATTCATTTTTGTCGTCAAGCCAAACAATCTCCGAAATTGGAATGTTTCAATCAAACTGTAATCTCCTTTTCTAAAGATGACGTTTTCTGTTGCATGTAGTCAGATTTATTGAACAGCTCTTTAGAATACAAGTCACATCTCCCACATTTTTCCATGAACAACTCCTGAATAGTAGAACTCATTTTTAAACTGTAGCCAAGTTTTTTTTCAATTATCTCGATTCCTATGAAAGATATCAAAAATGTTGCAACTGATAAAATATT</canonical>
            <polymorphic>AATAAAATAGTTAAAAATTTGTGAAAATTCTCGACTTCTATCAGCCATTGAATAAAAAGAAAAACACATTGGATAAGAAGAACTTGAAAAATTGGGCTTTTCATTCAGAAATCTATCACTCAAAATATTGGCTTCAGAAAATTGGGTCGACTCGGTCATTCTTCGCCACGCAGAGAAAATGTTCTCATCAGTTCAGTTCCGTCTCTACCGTATGCTTCAGTCTCCCGGGTCGCTGCACAATTCTGGGTGCACTTTGCATACATCCTGAATTTTTGTTTCACAGTAATAATCACTAAATTTTTAAAATTTCCATTGCAGATGAATTTGTTTTCATAAACAAAGAGAACGAAAGTTGAAACAGAGGAAATTAAAGAAAAATTATAGACTGCGAGCTGCAACTGGTTGAGAATTGTTCAACGGATCGTCGTTGTAATTATCATCAAATACGGCTAACAGCTAACAGTTCCAGCAGAAGTGTGACCTGAATAACTGAAAGATTWTAGTAAGTCATCTGACTGAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTTTTATTTATAAATAGAATCCTTTGGGATTACGGTATACCAAGCGGAAACGAGAGATTTTTATAGATCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAATAAAATTATAAAAGTTCATGTGATGAATTCATTTTTGTCGTCAAGCCAAACAATCTCCGAAATTGGAATGTTTCAATCAAACTGTAATCTCCTTTTCTAAAGATGACGTTTTCTGTTGCATGTAGTCAGATTTATTGAACAGCTCTTTAGAATACAAGTCACATCTCCCACATTTTTCCATGAACAACTCCTGAATAGTAGAACTCATTTTTAAACTGTAGCCAAGTTTTTTTTCAATTATCTCGATTCCTATGAAAGATATCAAAAATGTTGCAACTGATAAAATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCATAAACAAAGAGAACGAAAG</pcr_primer_p1>
		<pcr_primer_p2>AATAAAAATGAAGCAGACAAATG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTCATAAACAAAGAGAACGAAAGTTGAAACAGAGGAAATTAAAGAAAAATTATAGACTGCGAGCTGCAACTGGTTGAGAATTGTTCAACGGATCGTCGTTGTAATTATCATCAAATACGGCTAACAGCTAACAGTTCCAGCAGAAGTGTGACCTGAATAACTGAAAGATTTTAGTAAGTCATCTGACTGAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTTTTATT</canonical_amplicon>
		<polymorphic_amplicon>TTCATAAACAAAGAGAACGAAAGTTGAAACAGAGGAAATTAAAGAAAAATTATAGACTGCGAGCTGCAACTGGTTGAGAATTGTTCAACGGATCGTCGTTGTAATTATCATCAAATACGGCTAACAGCTAACAGTTCCAGCAGAAGTGTGACCTGAATAACTGAAAGATTWTAGTAAGTCATCTGACTGAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTTTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4176</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>100429</contig_pos>
        <strand>+</strand>
        <context>ATGCAACGAA[C/T]CCTTTCCCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCCAATGCTTACTGATCTCATTGTCCAGGGAATCAACAATGCAACGAA</left_flank>
        <right_flank>CCTTTCCCAAACAAAAACTTCCAGGTTTGAAAATTATACAAATTTCCGCT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAATCCAGACACTGATCCATTATTGGTATGGTTCAACGGAGGACCCGGTTGCTCTTCTTTAGGAGGTCTCTTTGAAGAACTTGGTCCATTTTATGTGAACTTTGACGGAGAAACACTTTATGAGAATCCGTACGCATGGAACGCGGTTAGTAATTCCGCATCAATGAATAGAATGAGCATACGCAACAATTACAGAAAGCTAATGTGCTCTATTTGGAATCTCCAATCGGTGTCGGATACTCATACGACACAACCACTCCCGGATACTTCCAAGCCAACGATAACCAAACGGCTGGTCAGAACTATCTCGCTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTAAACTACAATTGTATTATTTTTATTTCAGAGCTCAACCAAAATACGCCAACCGTACATTCTATCTTTCCGGGGAGTCGTATGCTGGAATTTATATTCCAATGCTTACTGATCTCATTGTCCAGGGAATCAACAATGCAACGAACCCTTTCCCAAACAAAAACTTCCAGGTTTGAAAATTATACAAATTTCCGCTAATCTTAATTTTGGCTTTAGGGATCCGCAATCGGAAACGGATTCATGAATGTAAAGGGACTTCTGAATGCACTTGCTTTGTGGAGTGCCTACCATGGACGTGTTTCTGTCCAGTAAGATAAATTGTTGAGAACAGGCAAATTACAGAAATTTGTTTACAGAGACTGGGACAATATTAAAAACAACTGTACAAACAACACCGATATGGACAACTTTGAATTCTCGAAATTTACAACCTCCAAAAATAAGATCGATTACGTTGGAGATGATTCATATTGCGGAAAGTTGATCCAACCACTTATTTCTCAAAACGCAGATAACACTGAAGGGTGGGAGGTTTCTTAAAAATCTGGTAGTCTATCTTATTTTTCAGATTTGACCAATACAATTTCTATCAAGAGTGCTACGACAAATCTGTTTTCCAAGCACCACCACCATCTGCTTCCGGAAA</canonical>
            <polymorphic>TCCAATCCAGACACTGATCCATTATTGGTATGGTTCAACGGAGGACCCGGTTGCTCTTCTTTAGGAGGTCTCTTTGAAGAACTTGGTCCATTTTATGTGAACTTTGACGGAGAAACACTTTATGAGAATCCGTACGCATGGAACGCGGTTAGTAATTCCGCATCAATGAATAGAATGAGCATACGCAACAATTACAGAAAGCTAATGTGCTCTATTTGGAATCTCCAATCGGTGTCGGATACTCATACGACACAACCACTCCCGGATACTTCCAAGCCAACGATAACCAAACGGCTGGTCAGAACTATCTCGCTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTAAACTACAATTGTATTATTTTTATTTCAGAGCTCAACCAAAATACGCCAACCGTACATTCTATCTTTCCGGGGAGTCGTATGCTGGAATTTATATTCCAATGCTTACTGATCTCATTGTCCAGGGAATCAACAATGCAACGAAYCCTTTCCCAAACAAAAACTTCCAGGTTTGAAAATTATACAAATTTCCGCTAATCTTAATTTTGGCTTTAGGGATCCGCAATCGGAAACGGATTCATGAATGTAAAGGGACTTCTGAATGCACTTGCTTTGTGGAGTGCCTACCATGGACGTGTTTCTGTCCAGTAAGATAAATTGTTGAGAACAGGCAAATTACAGAAATTTGTTTACAGAGACTGGGACAATATTAAAAACAACTGTACAAACAACACCGATATGGACAACTTTGAATTCTCGAAATTTACAACCTCCAAAAATAAGATCGATTACGTTGGAGATGATTCATATTGCGGAAAGTTGATCCAACCACTTATTTCTCAAAACGCAGATAACACTGAAGGGTGGGAGGTTTCTTAAAAATCTGGTAGTCTATCTTATTTTTCAGATTTGACCAATACAATTTCTATCAAGAGTGCTACGACAAATCTGTTTTCCAAGCACCACCACCATCTGCTTCCGGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTTACCAACTTCTTCAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>AATTAAGATTAGCGGAAATTTGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTAAACTACAATTGTATTATTTTTATTTCAGAGCTCAACCAAAATACGCCAACCGTACATTCTATCTTTCCGGGGAGTCGTATGCTGGAATTTATATTCCAATGCTTACTGATCTCATTGTCCAGGGAATCAACAATGCAACGAACCCTTTCCCAAACAAAAACTTCCAGGTTTGAAAATTATACAAATTTCCGCTAATCTTAATT</canonical_amplicon>
		<polymorphic_amplicon>CTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTAAACTACAATTGTATTATTTTTATTTCAGAGCTCAACCAAAATACGCCAACCGTACATTCTATCTTTCCGGGGAGTCGTATGCTGGAATTTATATTCCAATGCTTACTGATCTCATTGTCCAGGGAATCAACAATGCAACGAAYCCTTTCCCAAACAAAAACTTCCAGGTTTGAAAATTATACAAATTTCCGCTAATCTTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4177</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>100394</contig_pos>
        <strand>+</strand>
        <context>AATGCTTACT[A/G]ATCTCATTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTATCTTTCCGGGGAGTCGTATGCTGGAATTTATATTCCAATGCTTACT</left_flank>
        <right_flank>ATCTCATTGTCCAGGGAATCAACAATGCAACGAACCCTTTCCCAAACAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTGGGGGTTTTTCCAGGTTGACCGAATCTCGTTCCAATCCAGACACTGATCCATTATTGGTATGGTTCAACGGAGGACCCGGTTGCTCTTCTTTAGGAGGTCTCTTTGAAGAACTTGGTCCATTTTATGTGAACTTTGACGGAGAAACACTTTATGAGAATCCGTACGCATGGAACGCGGTTAGTAATTCCGCATCAATGAATAGAATGAGCATACGCAACAATTACAGAAAGCTAATGTGCTCTATTTGGAATCTCCAATCGGTGTCGGATACTCATACGACACAACCACTCCCGGATACTTCCAAGCCAACGATAACCAAACGGCTGGTCAGAACTATCTCGCTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTAAACTACAATTGTATTATTTTTATTTCAGAGCTCAACCAAAATACGCCAACCGTACATTCTATCTTTCCGGGGAGTCGTATGCTGGAATTTATATTCCAATGCTTACTGATCTCATTGTCCAGGGAATCAACAATGCAACGAACCCTTTCCCAAACAAAAACTTCCAGGTTTGAAAATTATACAAATTTCCGCTAATCTTAATTTTGGCTTTAGGGATCCGCAATCGGAAACGGATTCATGAATGTAAAGGGACTTCTGAATGCACTTGCTTTGTGGAGTGCCTACCATGGACGTGTTTCTGTCCAGTAAGATAAATTGTTGAGAACAGGCAAATTACAGAAATTTGTTTACAGAGACTGGGACAATATTAAAAACAACTGTACAAACAACACCGATATGGACAACTTTGAATTCTCGAAATTTACAACCTCCAAAAATAAGATCGATTACGTTGGAGATGATTCATATTGCGGAAAGTTGATCCAACCACTTATTTCTCAAAACGCAGATAACACTGAAGGGTGGGAGGTTTCTTAAAAATCTGGTAGTCTATCTTATTTTTCAGATTTGACCAATACAATTTCTATCAAGAGTGCTACGACAAATCT</canonical>
            <polymorphic>AAACTGGGGGTTTTTCCAGGTTGACCGAATCTCGTTCCAATCCAGACACTGATCCATTATTGGTATGGTTCAACGGAGGACCCGGTTGCTCTTCTTTAGGAGGTCTCTTTGAAGAACTTGGTCCATTTTATGTGAACTTTGACGGAGAAACACTTTATGAGAATCCGTACGCATGGAACGCGGTTAGTAATTCCGCATCAATGAATAGAATGAGCATACGCAACAATTACAGAAAGCTAATGTGCTCTATTTGGAATCTCCAATCGGTGTCGGATACTCATACGACACAACCACTCCCGGATACTTCCAAGCCAACGATAACCAAACGGCTGGTCAGAACTATCTCGCTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTAAACTACAATTGTATTATTTTTATTTCAGAGCTCAACCAAAATACGCCAACCGTACATTCTATCTTTCCGGGGAGTCGTATGCTGGAATTTATATTCCAATGCTTACTRATCTCATTGTCCAGGGAATCAACAATGCAACGAACCCTTTCCCAAACAAAAACTTCCAGGTTTGAAAATTATACAAATTTCCGCTAATCTTAATTTTGGCTTTAGGGATCCGCAATCGGAAACGGATTCATGAATGTAAAGGGACTTCTGAATGCACTTGCTTTGTGGAGTGCCTACCATGGACGTGTTTCTGTCCAGTAAGATAAATTGTTGAGAACAGGCAAATTACAGAAATTTGTTTACAGAGACTGGGACAATATTAAAAACAACTGTACAAACAACACCGATATGGACAACTTTGAATTCTCGAAATTTACAACCTCCAAAAATAAGATCGATTACGTTGGAGATGATTCATATTGCGGAAAGTTGATCCAACCACTTATTTCTCAAAACGCAGATAACACTGAAGGGTGGGAGGTTTCTTAAAAATCTGGTAGTCTATCTTATTTTTCAGATTTGACCAATACAATTTCTATCAAGAGTGCTACGACAAATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>449 226 129 107 50 39</canonical_bands>
                <polymorphic_bands>556 226 129 50 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTTACCAACTTCTTCAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>AATTAAGATTAGCGGAAATTTGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTAAACTACAATTGTATTATTTTTATTTCAGAGCTCAACCAAAATACGCCAACCGTACATTCTATCTTTCCGGGGAGTCGTATGCTGGAATTTATATTCCAATGCTTACTGATCTCATTGTCCAGGGAATCAACAATGCAACGAACCCTTTCCCAAACAAAAACTTCCAGGTTTGAAAATTATACAAATTTCCGCTAATCTTAATT</canonical_amplicon>
		<polymorphic_amplicon>CTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTAAACTACAATTGTATTATTTTTATTTCAGAGCTCAACCAAAATACGCCAACCGTACATTCTATCTTTCCGGGGAGTCGTATGCTGGAATTTATATTCCAATGCTTACTRATCTCATTGTCCAGGGAATCAACAATGCAACGAACCCTTTCCCAAACAAAAACTTCCAGGTTTGAAAATTATACAAATTTCCGCTAATCTTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4178</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>100378</contig_pos>
        <strand>+</strand>
        <context>CTGGAATTTA[C/T]ATTCCAATGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACGCCAACCGTACATTCTATCTTTCCGGGGAGTCGTATGCTGGAATTTA</left_flank>
        <right_flank>ATTCCAATGCTTACTGATCTCATTGTCCAGGGAATCAACAATGCAACGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAATTTGTGAAAAAAAACTGGGGGTTTTTCCAGGTTGACCGAATCTCGTTCCAATCCAGACACTGATCCATTATTGGTATGGTTCAACGGAGGACCCGGTTGCTCTTCTTTAGGAGGTCTCTTTGAAGAACTTGGTCCATTTTATGTGAACTTTGACGGAGAAACACTTTATGAGAATCCGTACGCATGGAACGCGGTTAGTAATTCCGCATCAATGAATAGAATGAGCATACGCAACAATTACAGAAAGCTAATGTGCTCTATTTGGAATCTCCAATCGGTGTCGGATACTCATACGACACAACCACTCCCGGATACTTCCAAGCCAACGATAACCAAACGGCTGGTCAGAACTATCTCGCTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTAAACTACAATTGTATTATTTTTATTTCAGAGCTCAACCAAAATACGCCAACCGTACATTCTATCTTTCCGGGGAGTCGTATGCTGGAATTTATATTCCAATGCTTACTGATCTCATTGTCCAGGGAATCAACAATGCAACGAACCCTTTCCCAAACAAAAACTTCCAGGTTTGAAAATTATACAAATTTCCGCTAATCTTAATTTTGGCTTTAGGGATCCGCAATCGGAAACGGATTCATGAATGTAAAGGGACTTCTGAATGCACTTGCTTTGTGGAGTGCCTACCATGGACGTGTTTCTGTCCAGTAAGATAAATTGTTGAGAACAGGCAAATTACAGAAATTTGTTTACAGAGACTGGGACAATATTAAAAACAACTGTACAAACAACACCGATATGGACAACTTTGAATTCTCGAAATTTACAACCTCCAAAAATAAGATCGATTACGTTGGAGATGATTCATATTGCGGAAAGTTGATCCAACCACTTATTTCTCAAAACGCAGATAACACTGAAGGGTGGGAGGTTTCTTAAAAATCTGGTAGTCTATCTTATTTTTCAGATTTGACCAATACAATTTCTATCAAGA</canonical>
            <polymorphic>TAAAATTTGTGAAAAAAAACTGGGGGTTTTTCCAGGTTGACCGAATCTCGTTCCAATCCAGACACTGATCCATTATTGGTATGGTTCAACGGAGGACCCGGTTGCTCTTCTTTAGGAGGTCTCTTTGAAGAACTTGGTCCATTTTATGTGAACTTTGACGGAGAAACACTTTATGAGAATCCGTACGCATGGAACGCGGTTAGTAATTCCGCATCAATGAATAGAATGAGCATACGCAACAATTACAGAAAGCTAATGTGCTCTATTTGGAATCTCCAATCGGTGTCGGATACTCATACGACACAACCACTCCCGGATACTTCCAAGCCAACGATAACCAAACGGCTGGTCAGAACTATCTCGCTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTAAACTACAATTGTATTATTTTTATTTCAGAGCTCAACCAAAATACGCCAACCGTACATTCTATCTTTCCGGGGAGTCGTATGCTGGAATTTAYATTCCAATGCTTACTGATCTCATTGTCCAGGGAATCAACAATGCAACGAACCCTTTCCCAAACAAAAACTTCCAGGTTTGAAAATTATACAAATTTCCGCTAATCTTAATTTTGGCTTTAGGGATCCGCAATCGGAAACGGATTCATGAATGTAAAGGGACTTCTGAATGCACTTGCTTTGTGGAGTGCCTACCATGGACGTGTTTCTGTCCAGTAAGATAAATTGTTGAGAACAGGCAAATTACAGAAATTTGTTTACAGAGACTGGGACAATATTAAAAACAACTGTACAAACAACACCGATATGGACAACTTTGAATTCTCGAAATTTACAACCTCCAAAAATAAGATCGATTACGTTGGAGATGATTCATATTGCGGAAAGTTGATCCAACCACTTATTTCTCAAAACGCAGATAACACTGAAGGGTGGGAGGTTTCTTAAAAATCTGGTAGTCTATCTTATTTTTCAGATTTGACCAATACAATTTCTATCAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTTACCAACTTCTTCAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>AATTAAGATTAGCGGAAATTTGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTAAACTACAATTGTATTATTTTTATTTCAGAGCTCAACCAAAATACGCCAACCGTACATTCTATCTTTCCGGGGAGTCGTATGCTGGAATTTATATTCCAATGCTTACTGATCTCATTGTCCAGGGAATCAACAATGCAACGAACCCTTTCCCAAACAAAAACTTCCAGGTTTGAAAATTATACAAATTTCCGCTAATCTTAATT</canonical_amplicon>
		<polymorphic_amplicon>CTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTAAACTACAATTGTATTATTTTTATTTCAGAGCTCAACCAAAATACGCCAACCGTACATTCTATCTTTCCGGGGAGTCGTATGCTGGAATTTAYATTCCAATGCTTACTGATCTCATTGTCCAGGGAATCAACAATGCAACGAACCCTTTCCCAAACAAAAACTTCCAGGTTTGAAAATTATACAAATTTCCGCTAATCTTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4179</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>100220</contig_pos>
        <strand>+</strand>
        <context>CGATRACCAA[A/T]CGGCTGGTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTCATACGACACAACCACTCCCGGATACTTCCAAGCCAACGATAACCAA</left_flank>
        <right_flank>CGGCTGGTCAGAACTATCTCGCTCTTACCAACTTCTTCAAAGTGTAATTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCCTAATAGCTTACTCTCCCGTTTTCTTTCCATTTTTCCACCTCAGCAAAATTGCGGTAGTCACCTAATTCAGTCATAATTCTTACGTAATTCTCGCAAAATCTAGTCAGAAACTTACTGATAACGGTGCTGTATTCCTTTGAATATCGAAGCAAATAAAATTTGTGAAAAAAAACTGGGGGTTTTTCCAGGTTGACCGAATCTCGTTCCAATCCAGACACTGATCCATTATTGGTATGGTTCAACGGAGGACCCGGTTGCTCTTCTTTAGGAGGTCTCTTTGAAGAACTTGGTCCATTTTATGTGAACTTTGACGGAGAAACACTTTATGAGAATCCGTACGCATGGAACGCGGTTAGTAATTCCGCATCAATGAATAGAATGAGCATACGCAACAATTACAGAAAGCTAATGTGCTCTATTTGGAATCTCCAATCGGTGTCGGATACTCATACGACACAACCACTCCCGGATACTTCCAAGCCAACGATAACCAAACGGCTGGTCAGAACTATCTCGCTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTAAACTACAATTGTATTATTTTTATTTCAGAGCTCAACCAAAATACGCCAACCGTACATTCTATCTTTCCGGGGAGTCGTATGCTGGAATTTATATTCCAATGCTTACTGATCTCATTGTCCAGGGAATCAACAATGCAACGAACCCTTTCCCAAACAAAAACTTCCAGGTTTGAAAATTATACAAATTTCCGCTAATCTTAATTTTGGCTTTAGGGATCCGCAATCGGAAACGGATTCATGAATGTAAAGGGACTTCTGAATGCACTTGCTTTGTGGAGTGCCTACCATGGACGTGTTTCTGTCCAGTAAGATAAATTGTTGAGAACAGGCAAATTACAGAAATTTGTTTACAGAGACTGGGACAATATTAAAAACAACTGTACAAACAACACCGATATGGACAACTTTGAATTCTCGAAATTTACAACCTCCAA</canonical>
            <polymorphic>CATCCTAATAGCTTACTCTCCCGTTTTCTTTCCATTTTTCCACCTCAGCAAAATTGCGGTAGTCACCTAATTCAGTCATAATTCTTACGTAATTCTCGCAAAATCTAGTCAGAAACTTACTGATAACGGTGCTGTATTCCTTTGAATATCGAAGCAAATAAAATTTGTGAAAAAAAACTGGGGGTTTTTCCAGGTTGACCGAATCTCGTTCCAATCCAGACACTGATCCATTATTGGTATGGTTCAACGGAGGACCCGGTTGCTCTTCTTTAGGAGGTCTCTTTGAAGAACTTGGTCCATTTTATGTGAACTTTGACGGAGAAACACTTTATGAGAATCCGTACGCATGGAACGCGGTTAGTAATTCCGCATCAATGAATAGAATGAGCATACGCAACAATTACAGAAAGCTAATGTGCTCTATTTGGAATCTCCAATCGGTGTCGGATACTCATACGACACAACCACTCCCGGATACTTCCAAGCCAACGATAACCAAWCGGCTGGTCAGAACTATCTCGCTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTAAACTACAATTGTATTATTTTTATTTCAGAGCTCAACCAAAATACGCCAACCGTACATTCTATCTTTCCGGGGAGTCGTATGCTGGAATTTATATTCCAATGCTTACTGATCTCATTGTCCAGGGAATCAACAATGCAACGAACCCTTTCCCAAACAAAAACTTCCAGGTTTGAAAATTATACAAATTTCCGCTAATCTTAATTTTGGCTTTAGGGATCCGCAATCGGAAACGGATTCATGAATGTAAAGGGACTTCTGAATGCACTTGCTTTGTGGAGTGCCTACCATGGACGTGTTTCTGTCCAGTAAGATAAATTGTTGAGAACAGGCAAATTACAGAAATTTGTTTACAGAGACTGGGACAATATTAAAAACAACTGTACAAACAACACCGATATGGACAACTTTGAATTCTCGAAATTTACAACCTCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGAGAAACACTTTATGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TACGAAAAACCAGAATCAATTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGGAGAAACACTTTATGAGAATCCGTACGCATGGAACGCGGTTAGTAATTCCGCATCAATGAATAGAATGAGCATACGCAACAATTACAGAAAGCTAATGTGCTCTATTTGGAATCTCCAATCGGTGTCGGATACTCATACGACACAACCACTCCCGGATACTTCCAAGCCAACGATAACCAAACGGCTGGTCAGAACTATCTCGCTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTA</canonical_amplicon>
		<polymorphic_amplicon>CGGAGAAACACTTTATGAGAATCCGTACGCATGGAACGCGGTTAGTAATTCCGCATCAATGAATAGAATGAGCATACGCAACAATTACAGAAAGCTAATGTGCTCTATTTGGAATCTCCAATCGGTGTCGGATACTCATACGACACAACCACTCCCGGATACTTCCAAGCCAACGATAACCAAWCGGCTGGTCAGAACTATCTCGCTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4180</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>100214</contig_pos>
        <strand>+</strand>
        <context>AGCCAACGAT[A/G]ACCAAWCGGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGGATACTCATACGACACAACCACTCCCGGATACTTCCAAGCCAACGAT</left_flank>
        <right_flank>ACCAAACGGCTGGTCAGAACTATCTCGCTCTTACCAACTTCTTCAAAGTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGTCATCCTAATAGCTTACTCTCCCGTTTTCTTTCCATTTTTCCACCTCAGCAAAATTGCGGTAGTCACCTAATTCAGTCATAATTCTTACGTAATTCTCGCAAAATCTAGTCAGAAACTTACTGATAACGGTGCTGTATTCCTTTGAATATCGAAGCAAATAAAATTTGTGAAAAAAAACTGGGGGTTTTTCCAGGTTGACCGAATCTCGTTCCAATCCAGACACTGATCCATTATTGGTATGGTTCAACGGAGGACCCGGTTGCTCTTCTTTAGGAGGTCTCTTTGAAGAACTTGGTCCATTTTATGTGAACTTTGACGGAGAAACACTTTATGAGAATCCGTACGCATGGAACGCGGTTAGTAATTCCGCATCAATGAATAGAATGAGCATACGCAACAATTACAGAAAGCTAATGTGCTCTATTTGGAATCTCCAATCGGTGTCGGATACTCATACGACACAACCACTCCCGGATACTTCCAAGCCAACGATAACCAAACGGCTGGTCAGAACTATCTCGCTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTAAACTACAATTGTATTATTTTTATTTCAGAGCTCAACCAAAATACGCCAACCGTACATTCTATCTTTCCGGGGAGTCGTATGCTGGAATTTATATTCCAATGCTTACTGATCTCATTGTCCAGGGAATCAACAATGCAACGAACCCTTTCCCAAACAAAAACTTCCAGGTTTGAAAATTATACAAATTTCCGCTAATCTTAATTTTGGCTTTAGGGATCCGCAATCGGAAACGGATTCATGAATGTAAAGGGACTTCTGAATGCACTTGCTTTGTGGAGTGCCTACCATGGACGTGTTTCTGTCCAGTAAGATAAATTGTTGAGAACAGGCAAATTACAGAAATTTGTTTACAGAGACTGGGACAATATTAAAAACAACTGTACAAACAACACCGATATGGACAACTTTGAATTCTCGAAATTTACAAC</canonical>
            <polymorphic>TTCTGTCATCCTAATAGCTTACTCTCCCGTTTTCTTTCCATTTTTCCACCTCAGCAAAATTGCGGTAGTCACCTAATTCAGTCATAATTCTTACGTAATTCTCGCAAAATCTAGTCAGAAACTTACTGATAACGGTGCTGTATTCCTTTGAATATCGAAGCAAATAAAATTTGTGAAAAAAAACTGGGGGTTTTTCCAGGTTGACCGAATCTCGTTCCAATCCAGACACTGATCCATTATTGGTATGGTTCAACGGAGGACCCGGTTGCTCTTCTTTAGGAGGTCTCTTTGAAGAACTTGGTCCATTTTATGTGAACTTTGACGGAGAAACACTTTATGAGAATCCGTACGCATGGAACGCGGTTAGTAATTCCGCATCAATGAATAGAATGAGCATACGCAACAATTACAGAAAGCTAATGTGCTCTATTTGGAATCTCCAATCGGTGTCGGATACTCATACGACACAACCACTCCCGGATACTTCCAAGCCAACGATRACCAAACGGCTGGTCAGAACTATCTCGCTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTAAACTACAATTGTATTATTTTTATTTCAGAGCTCAACCAAAATACGCCAACCGTACATTCTATCTTTCCGGGGAGTCGTATGCTGGAATTTATATTCCAATGCTTACTGATCTCATTGTCCAGGGAATCAACAATGCAACGAACCCTTTCCCAAACAAAAACTTCCAGGTTTGAAAATTATACAAATTTCCGCTAATCTTAATTTTGGCTTTAGGGATCCGCAATCGGAAACGGATTCATGAATGTAAAGGGACTTCTGAATGCACTTGCTTTGTGGAGTGCCTACCATGGACGTGTTTCTGTCCAGTAAGATAAATTGTTGAGAACAGGCAAATTACAGAAATTTGTTTACAGAGACTGGGACAATATTAAAAACAACTGTACAAACAACACCGATATGGACAACTTTGAATTCTCGAAATTTACAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGAGAAACACTTTATGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TACGAAAAACCAGAATCAATTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGGAGAAACACTTTATGAGAATCCGTACGCATGGAACGCGGTTAGTAATTCCGCATCAATGAATAGAATGAGCATACGCAACAATTACAGAAAGCTAATGTGCTCTATTTGGAATCTCCAATCGGTGTCGGATACTCATACGACACAACCACTCCCGGATACTTCCAAGCCAACGATAACCAAACGGCTGGTCAGAACTATCTCGCTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTA</canonical_amplicon>
		<polymorphic_amplicon>CGGAGAAACACTTTATGAGAATCCGTACGCATGGAACGCGGTTAGTAATTCCGCATCAATGAATAGAATGAGCATACGCAACAATTACAGAAAGCTAATGTGCTCTATTTGGAATCTCCAATCGGTGTCGGATACTCATACGACACAACCACTCCCGGATACTTCCAAGCCAACGATRACCAAACGGCTGGTCAGAACTATCTCGCTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4181</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>100113</contig_pos>
        <strand>+</strand>
        <context>AATGAGCATA[C/T]GCAACAATTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGCATGGAACGCGGTTAGTAATTCCGCATCAATGAATAGAATGAGCATA</left_flank>
        <right_flank>GCAACAATTACAGAAAGCTAATGTGCTCTATTTGGAATCTCCAATCGGTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATAAATAACTCTTAATGAATTTTATTCCTGCCTAGTCATCATGTTCTGACATAAATTTCCAAAATTTATCATCGTTTTTCTGATTCAAAGTCATCAAACTTCTGTCATCCTAATAGCTTACTCTCCCGTTTTCTTTCCATTTTTCCACCTCAGCAAAATTGCGGTAGTCACCTAATTCAGTCATAATTCTTACGTAATTCTCGCAAAATCTAGTCAGAAACTTACTGATAACGGTGCTGTATTCCTTTGAATATCGAAGCAAATAAAATTTGTGAAAAAAAACTGGGGGTTTTTCCAGGTTGACCGAATCTCGTTCCAATCCAGACACTGATCCATTATTGGTATGGTTCAACGGAGGACCCGGTTGCTCTTCTTTAGGAGGTCTCTTTGAAGAACTTGGTCCATTTTATGTGAACTTTGACGGAGAAACACTTTATGAGAATCCGTACGCATGGAACGCGGTTAGTAATTCCGCATCAATGAATAGAATGAGCATACGCAACAATTACAGAAAGCTAATGTGCTCTATTTGGAATCTCCAATCGGTGTCGGATACTCATACGACACAACCACTCCCGGATACTTCCAAGCCAACGATAACCAAACGGCTGGTCAGAACTATCTCGCTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTAAACTACAATTGTATTATTTTTATTTCAGAGCTCAACCAAAATACGCCAACCGTACATTCTATCTTTCCGGGGAGTCGTATGCTGGAATTTATATTCCAATGCTTACTGATCTCATTGTCCAGGGAATCAACAATGCAACGAACCCTTTCCCAAACAAAAACTTCCAGGTTTGAAAATTATACAAATTTCCGCTAATCTTAATTTTGGCTTTAGGGATCCGCAATCGGAAACGGATTCATGAATGTAAAGGGACTTCTGAATGCACTTGCTTTGTGGAGTGCCTACCATGGACGTGTTTCTGTCCAGTAAGATAAATTGTTGAGAACA</canonical>
            <polymorphic>TCATAAATAACTCTTAATGAATTTTATTCCTGCCTAGTCATCATGTTCTGACATAAATTTCCAAAATTTATCATCGTTTTTCTGATTCAAAGTCATCAAACTTCTGTCATCCTAATAGCTTACTCTCCCGTTTTCTTTCCATTTTTCCACCTCAGCAAAATTGCGGTAGTCACCTAATTCAGTCATAATTCTTACGTAATTCTCGCAAAATCTAGTCAGAAACTTACTGATAACGGTGCTGTATTCCTTTGAATATCGAAGCAAATAAAATTTGTGAAAAAAAACTGGGGGTTTTTCCAGGTTGACCGAATCTCGTTCCAATCCAGACACTGATCCATTATTGGTATGGTTCAACGGAGGACCCGGTTGCTCTTCTTTAGGAGGTCTCTTTGAAGAACTTGGTCCATTTTATGTGAACTTTGACGGAGAAACACTTTATGAGAATCCGTACGCATGGAACGCGGTTAGTAATTCCGCATCAATGAATAGAATGAGCATAYGCAACAATTACAGAAAGCTAATGTGCTCTATTTGGAATCTCCAATCGGTGTCGGATACTCATACGACACAACCACTCCCGGATACTTCCAAGCCAACGATAACCAAACGGCTGGTCAGAACTATCTCGCTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTAAACTACAATTGTATTATTTTTATTTCAGAGCTCAACCAAAATACGCCAACCGTACATTCTATCTTTCCGGGGAGTCGTATGCTGGAATTTATATTCCAATGCTTACTGATCTCATTGTCCAGGGAATCAACAATGCAACGAACCCTTTCCCAAACAAAAACTTCCAGGTTTGAAAATTATACAAATTTCCGCTAATCTTAATTTTGGCTTTAGGGATCCGCAATCGGAAACGGATTCATGAATGTAAAGGGACTTCTGAATGCACTTGCTTTGTGGAGTGCCTACCATGGACGTGTTTCTGTCCAGTAAGATAAATTGTTGAGAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGAGAAACACTTTATGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TACGAAAAACCAGAATCAATTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGGAGAAACACTTTATGAGAATCCGTACGCATGGAACGCGGTTAGTAATTCCGCATCAATGAATAGAATGAGCATACGCAACAATTACAGAAAGCTAATGTGCTCTATTTGGAATCTCCAATCGGTGTCGGATACTCATACGACACAACCACTCCCGGATACTTCCAAGCCAACGATAACCAAACGGCTGGTCAGAACTATCTCGCTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTA</canonical_amplicon>
		<polymorphic_amplicon>CGGAGAAACACTTTATGAGAATCCGTACGCATGGAACGCGGTTAGTAATTCCGCATCAATGAATAGAATGAGCATAYGCAACAATTACAGAAAGCTAATGTGCTCTATTTGGAATCTCCAATCGGTGTCGGATACTCATACGACACAACCACTCCCGGATACTTCCAAGCCAACGATAACCAAACGGCTGGTCAGAACTATCTCGCTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4182</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>100090</contig_pos>
        <strand>+</strand>
        <context>AGTAATTCCG[C/T]ATCAATGAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAACACTTTATGAGAATCCGTACGCATGGAACGCGGTTAGTAATTCCG</left_flank>
        <right_flank>ATCAATGAATAGAATGAGCATACGCAACAATTACAGAAAGCTAATGTGCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTTTACAGTAGCCCAAAAATATCATAAATAACTCTTAATGAATTTTATTCCTGCCTAGTCATCATGTTCTGACATAAATTTCCAAAATTTATCATCGTTTTTCTGATTCAAAGTCATCAAACTTCTGTCATCCTAATAGCTTACTCTCCCGTTTTCTTTCCATTTTTCCACCTCAGCAAAATTGCGGTAGTCACCTAATTCAGTCATAATTCTTACGTAATTCTCGCAAAATCTAGTCAGAAACTTACTGATAACGGTGCTGTATTCCTTTGAATATCGAAGCAAATAAAATTTGTGAAAAAAAACTGGGGGTTTTTCCAGGTTGACCGAATCTCGTTCCAATCCAGACACTGATCCATTATTGGTATGGTTCAACGGAGGACCCGGTTGCTCTTCTTTAGGAGGTCTCTTTGAAGAACTTGGTCCATTTTATGTGAACTTTGACGGAGAAACACTTTATGAGAATCCGTACGCATGGAACGCGGTTAGTAATTCCGCATCAATGAATAGAATGAGCATACGCAACAATTACAGAAAGCTAATGTGCTCTATTTGGAATCTCCAATCGGTGTCGGATACTCATACGACACAACCACTCCCGGATACTTCCAAGCCAACGATAACCAAACGGCTGGTCAGAACTATCTCGCTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTAAACTACAATTGTATTATTTTTATTTCAGAGCTCAACCAAAATACGCCAACCGTACATTCTATCTTTCCGGGGAGTCGTATGCTGGAATTTATATTCCAATGCTTACTGATCTCATTGTCCAGGGAATCAACAATGCAACGAACCCTTTCCCAAACAAAAACTTCCAGGTTTGAAAATTATACAAATTTCCGCTAATCTTAATTTTGGCTTTAGGGATCCGCAATCGGAAACGGATTCATGAATGTAAAGGGACTTCTGAATGCACTTGCTTTGTGGAGTGCCTACCATGGACGTGTTTCTGTCC</canonical>
            <polymorphic>CAGTTTACAGTAGCCCAAAAATATCATAAATAACTCTTAATGAATTTTATTCCTGCCTAGTCATCATGTTCTGACATAAATTTCCAAAATTTATCATCGTTTTTCTGATTCAAAGTCATCAAACTTCTGTCATCCTAATAGCTTACTCTCCCGTTTTCTTTCCATTTTTCCACCTCAGCAAAATTGCGGTAGTCACCTAATTCAGTCATAATTCTTACGTAATTCTCGCAAAATCTAGTCAGAAACTTACTGATAACGGTGCTGTATTCCTTTGAATATCGAAGCAAATAAAATTTGTGAAAAAAAACTGGGGGTTTTTCCAGGTTGACCGAATCTCGTTCCAATCCAGACACTGATCCATTATTGGTATGGTTCAACGGAGGACCCGGTTGCTCTTCTTTAGGAGGTCTCTTTGAAGAACTTGGTCCATTTTATGTGAACTTTGACGGAGAAACACTTTATGAGAATCCGTACGCATGGAACGCGGTTAGTAATTCCGYATCAATGAATAGAATGAGCATACGCAACAATTACAGAAAGCTAATGTGCTCTATTTGGAATCTCCAATCGGTGTCGGATACTCATACGACACAACCACTCCCGGATACTTCCAAGCCAACGATAACCAAACGGCTGGTCAGAACTATCTCGCTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTAAACTACAATTGTATTATTTTTATTTCAGAGCTCAACCAAAATACGCCAACCGTACATTCTATCTTTCCGGGGAGTCGTATGCTGGAATTTATATTCCAATGCTTACTGATCTCATTGTCCAGGGAATCAACAATGCAACGAACCCTTTCCCAAACAAAAACTTCCAGGTTTGAAAATTATACAAATTTCCGCTAATCTTAATTTTGGCTTTAGGGATCCGCAATCGGAAACGGATTCATGAATGTAAAGGGACTTCTGAATGCACTTGCTTTGTGGAGTGCCTACCATGGACGTGTTTCTGTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>497 388 86 29</canonical_bands>
                <polymorphic_bands>885 86 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGAGAAACACTTTATGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TACGAAAAACCAGAATCAATTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGGAGAAACACTTTATGAGAATCCGTACGCATGGAACGCGGTTAGTAATTCCGCATCAATGAATAGAATGAGCATACGCAACAATTACAGAAAGCTAATGTGCTCTATTTGGAATCTCCAATCGGTGTCGGATACTCATACGACACAACCACTCCCGGATACTTCCAAGCCAACGATAACCAAACGGCTGGTCAGAACTATCTCGCTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTA</canonical_amplicon>
		<polymorphic_amplicon>CGGAGAAACACTTTATGAGAATCCGTACGCATGGAACGCGGTTAGTAATTCCGYATCAATGAATAGAATGAGCATACGCAACAATTACAGAAAGCTAATGTGCTCTATTTGGAATCTCCAATCGGTGTCGGATACTCATACGACACAACCACTCCCGGATACTTCCAAGCCAACGATAACCAAACGGCTGGTCAGAACTATCTCGCTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4183</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>99992</contig_pos>
        <strand>+</strand>
        <context>GCTCTTCTTT[A/G]GGAGGTCTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTGATCCATTATTGGTATGGTTCAACGGAGGACCCGGTTGCTCTTCTTT</left_flank>
        <right_flank>GGAGGTCTCTTTGAAGAACTTGGTCCATTTTATGTGAACTTTGACGGAGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTCTATCGTATCTAATTTAGCTGGTCCAAAAGTATTGGTCCTAAAAGAAACTATGACAGGGCCCGGTTTACAATTATGCTTTAAACATTAACGTTCAGTTTACAGTAGCCCAAAAATATCATAAATAACTCTTAATGAATTTTATTCCTGCCTAGTCATCATGTTCTGACATAAATTTCCAAAATTTATCATCGTTTTTCTGATTCAAAGTCATCAAACTTCTGTCATCCTAATAGCTTACTCTCCCGTTTTCTTTCCATTTTTCCACCTCAGCAAAATTGCGGTAGTCACCTAATTCAGTCATAATTCTTACGTAATTCTCGCAAAATCTAGTCAGAAACTTACTGATAACGGTGCTGTATTCCTTTGAATATCGAAGCAAATAAAATTTGTGAAAAAAAACTGGGGGTTTTTCCAGGTTGACCGAATCTCGTTCCAATCCAGACACTGATCCATTATTGGTATGGTTCAACGGAGGACCCGGTTGCTCTTCTTTAGGAGGTCTCTTTGAAGAACTTGGTCCATTTTATGTGAACTTTGACGGAGAAACACTTTATGAGAATCCGTACGCATGGAACGCGGTTAGTAATTCCGCATCAATGAATAGAATGAGCATACGCAACAATTACAGAAAGCTAATGTGCTCTATTTGGAATCTCCAATCGGTGTCGGATACTCATACGACACAACCACTCCCGGATACTTCCAAGCCAACGATAACCAAACGGCTGGTCAGAACTATCTCGCTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTAAACTACAATTGTATTATTTTTATTTCAGAGCTCAACCAAAATACGCCAACCGTACATTCTATCTTTCCGGGGAGTCGTATGCTGGAATTTATATTCCAATGCTTACTGATCTCATTGTCCAGGGAATCAACAATGCAACGAACCCTTTCCCAAACAAAAACTTCCAGGTTTGAAAATTATACAAATTTCCGCTAATCTTAATTTTG</canonical>
            <polymorphic>AAGTTCTATCGTATCTAATTTAGCTGGTCCAAAAGTATTGGTCCTAAAAGAAACTATGACAGGGCCCGGTTTACAATTATGCTTTAAACATTAACGTTCAGTTTACAGTAGCCCAAAAATATCATAAATAACTCTTAATGAATTTTATTCCTGCCTAGTCATCATGTTCTGACATAAATTTCCAAAATTTATCATCGTTTTTCTGATTCAAAGTCATCAAACTTCTGTCATCCTAATAGCTTACTCTCCCGTTTTCTTTCCATTTTTCCACCTCAGCAAAATTGCGGTAGTCACCTAATTCAGTCATAATTCTTACGTAATTCTCGCAAAATCTAGTCAGAAACTTACTGATAACGGTGCTGTATTCCTTTGAATATCGAAGCAAATAAAATTTGTGAAAAAAAACTGGGGGTTTTTCCAGGTTGACCGAATCTCGTTCCAATCCAGACACTGATCCATTATTGGTATGGTTCAACGGAGGACCCGGTTGCTCTTCTTTRGGAGGTCTCTTTGAAGAACTTGGTCCATTTTATGTGAACTTTGACGGAGAAACACTTTATGAGAATCCGTACGCATGGAACGCGGTTAGTAATTCCGCATCAATGAATAGAATGAGCATACGCAACAATTACAGAAAGCTAATGTGCTCTATTTGGAATCTCCAATCGGTGTCGGATACTCATACGACACAACCACTCCCGGATACTTCCAAGCCAACGATAACCAAACGGCTGGTCAGAACTATCTCGCTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTAAACTACAATTGTATTATTTTTATTTCAGAGCTCAACCAAAATACGCCAACCGTACATTCTATCTTTCCGGGGAGTCGTATGCTGGAATTTATATTCCAATGCTTACTGATCTCATTGTCCAGGGAATCAACAATGCAACGAACCCTTTCCCAAACAAAAACTTCCAGGTTTGAAAATTATACAAATTTCCGCTAATCTTAATTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCAAAATCTAGTCAGAAACTTA</pcr_primer_p1>
		<pcr_primer_p2>TACGGATTCTCATAAAGTGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CGCAAAATCTAGTCAGAAACTTACTGATAACGGTGCTGTATTCCTTTGAATATCGAAGCAAATAAAATTTGTGAAAAAAAACTGGGGGTTTTTCCAGGTTGACCGAATCTCGTTCCAATCCAGACACTGATCCATTATTGGTATGGTTCAACGGAGGACCCGGTTGCTCTTCTTTAGGAGGTCTCTTTGAAGAACTTGGTCCATTTTATGTGAACTTTGACGGAGAAACACTTTATGAGAATCCGTA</canonical_amplicon>
		<polymorphic_amplicon>CGCAAAATCTAGTCAGAAACTTACTGATAACGGTGCTGTATTCCTTTGAATATCGAAGCAAATAAAATTTGTGAAAAAAAACTGGGGGTTTTTCCAGGTTGACCGAATCTCGTTCCAATCCAGACACTGATCCATTATTGGTATGGTTCAACGGAGGACCCGGTTGCTCTTCTTTRGGAGGTCTCTTTGAAGAACTTGGTCCATTTTATGTGAACTTTGACGGAGAAACACTTTATGAGAATCCGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4191</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>161844</contig_pos>
        <strand>+</strand>
        <context>TTCATCATTT[A/G]CTTTTTGTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTGTTTTTTTGTCCGTCGAATTCTTTTCCCAACTCCCAATTCATCATTT</left_flank>
        <right_flank>CTTTTTGTTTACTGAAACTCATTAAAAACCTGTTATCATTCGGCTGAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGTCGTCTATCAGAAGACGTGTGTCCTTGCGTCAGGAAAACAAAACACAAGGAAATGTTTAGAAGGGGACCTTTTTGAAAATTTATTGCTTTTTCGAACAGAATATCCAAATAACAGAAGAAGCCAACACCCTTTTCTAGCAGTGGTCTCTAATTCTGGAAGCTCCTAATTCCAAGTTTTGAGAATTTTGCTCCACGAGATTCTTGTGAACGGTAGCATTCCGAATTAATTACTCATGAAAACATATTCAGGAATTACTCATCAAACGAATTTAATCAGCGAAGAATCTAAATGATTCAGAAAATGCACGAGACTGATTTTTCAGTTGCAGAACGTCGAATTTTGGGACTGTACATAAATAAACGTTCCTTACTCATCATAAACAAATTGCAAATCGAGAATTACCCACAGCAGCAAAAAAAATCTAGAATGATCTCCAAATAGATTCTTGTTTTTTTGTCCGTCGAATTCTTTTCCCAACTCCCAATTCATCATTTGCTTTTTGTTTACTGAAACTCATTAAAAACCTGTTATCATTCGGCTGAACAGTTGCACTTTTCAATTGAATTCGAGAGAAATGATAAGAAGGTGATAAAGGTTTGCACAGGGGTGTTTTCAACCGAAAAATAAACAAAAGATATGCTTCCGAAAAGGTATGTACGATCTATGTGTCATCTGACCATATGACCCTGAACTGGTCTCCATTTCTCTCGGGGGAACTTTTTTTGGATAGTTTTTTTAGGATAGCCAGACAATTTGGAGTCTTGTTTAGGTGCTTAGCAGATTCGATAAGTCGTTTTTCGGGTTCGACAAAGTTTGAGATGTTTATACTTGCAATACTTGATGAATCAATTTTTTGTTTACTATCATTTCTACAAATTTTACGAACGTTGTCTAATTACGTTGGATCTCTAGTTTCTGCCAATGGGAACGAAGAGAAACATTTTTAGATGGGGGTTTCAGTGGATAAGGTCTAGATGTCCATTTTGAGATCAGTT</canonical>
            <polymorphic>GACGTCGTCTATCAGAAGACGTGTGTCCTTGCGTCAGGAAAACAAAACACAAGGAAATGTTTAGAAGGGGACCTTTTTGAAAATTTATTGCTTTTTCGAACAGAATATCCAAATAACAGAAGAAGCCAACACCCTTTTCTAGCAGTGGTCTCTAATTCTGGAAGCTCCTAATTCCAAGTTTTGAGAATTTTGCTCCACGAGATTCTTGTGAACGGTAGCATTCCGAATTAATTACTCATGAAAACATATTCAGGAATTACTCATCAAACGAATTTAATCAGCGAAGAATCTAAATGATTCAGAAAATGCACGAGACTGATTTTTCAGTTGCAGAACGTCGAATTTTGGGACTGTACATAAATAAACGTTCCTTACTCATCATAAACAAATTGCAAATCGAGAATTACCCACAGCAGCAAAAAAAATCTAGAATGATCTCCAAATAGATTCTTGTTTTTTTGTCCGTCGAATTCTTTTCCCAACTCCCAATTCATCATTTRCTTTTTGTTTACTGAAACTCATTAAAAACCTGTTATCATTCGGCTGAACAGTTGCACTTTTCAATTGAATTCGAGAGAAATGATAAGAAGGTGATAAAGGTTTGCACAGGGGTGTTTTCAACCGAAAAATAAACAAAAGATATGCTTCCGAAAAGGTATGTACGATCTATGTGTCATCTGACCATATGACCCTGAACTGGTCTCCATTTCTCTCGGGGGAACTTTTTTTGGATAGTTTTTTTAGGATAGCCAGACAATTTGGAGTCTTGTTTAGGTGCTTAGCAGATTCGATAAGTCGTTTTTCGGGTTCGACAAAGTTTGAGATGTTTATACTTGCAATACTTGATGAATCAATTTTTTGTTTACTATCATTTCTACAAATTTTACGAACGTTGTCTAATTACGTTGGATCTCTAGTTTCTGCCAATGGGAACGAAGAGAAACATTTTTAGATGGGGGTTTCAGTGGATAAGGTCTAGATGTCCATTTTGAGATCAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATAAACGTTCCTTACTCATCA</pcr_primer_p1>
		<pcr_primer_p2>GCAAACCTTTATCACCTTCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATAAACGTTCCTTACTCATCATAAACAAATTGCAAATCGAGAATTACCCACAGCAGCAAAAAAAATCTAGAATGATCTCCAAATAGATTCTTGTTTTTTTGTCCGTCGAATTCTTTTCCCAACTCCCAATTCATCATTTGCTTTTTGTTTACTGAAACTCATTAAAAACCTGTTATCATTCGGCTGAACAGTTGCACTTTTCAATTGAATTCGAGAGAAATGATAAGAAGGTGATAAAGGTTTGC</canonical_amplicon>
		<polymorphic_amplicon>AAATAAACGTTCCTTACTCATCATAAACAAATTGCAAATCGAGAATTACCCACAGCAGCAAAAAAAATCTAGAATGATCTCCAAATAGATTCTTGTTTTTTTGTCCGTCGAATTCTTTTCCCAACTCCCAATTCATCATTTRCTTTTTGTTTACTGAAACTCATTAAAAACCTGTTATCATTCGGCTGAACAGTTGCACTTTTCAATTGAATTCGAGAGAAATGATAAGAAGGTGATAAAGGTTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4192</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>165615</contig_pos>
        <strand>+</strand>
        <context>TCTGGGATTT[C/T]CCTATTCGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTCAAACGGTGGTCAACTTTTAATCAAATCACAGATTTTCTGGGATTT</left_flank>
        <right_flank>CCTATTCGGAAAAGTTTCGAAATCCGAACACGACGAATTCTGTGTCCCGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTTGATATCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTTCGATTCTTTCTTCAAGCCAGGTTTTCAACTTTGGTACTAAATGCATGCTCTAATCGCATTTAAATCAGGAAGACATCTTTCTTCTGACTTTTTCAGAATTCAATCTAAAATTTGTCTTTCTCTGGAAATTTCAGACATGACGGGAGTTCTAAAAAAGATCAAAATCCTCAGCCTATTAGATAAAACCATGAGTAACGGACACTCACTTGCGTCTTTGGTAATTCGAATGTCATGATTATTGTCATTTTTGGAACAATATTTTTGCAGACAGATCTGCCTACACACAACTATTTTAGTAGATATTTCGAGATGTTATGAATGAATAAATCCAAAACCTTTTTTGTCTTATCTGTTAAACCAAATTCGTACAGAGATTACTTCCGGCAATGGGGGATCGTAGTTTTCTCAAACGGTGGTCAACTTTTAATCAAATCACAGATTTTCTGGGATTTTCCTATTCGGAAAAGTTTCGAAATCCGAACACGACGAATTCTGTGTCCCGGCAGAAAATGACGTTTTGTAGGAATTTCGGAAGAAAACGAATCGAATTAGTGTGGACATGATGACTATTCTATTTATTTGTTCTGCAACCATTGAGTCAAAAAATACACAAAAAGTTCAAAACGGTTCGGGAGATATGGGACAAGAATCAACATGATGCTATTGGTTTCACGTGTGTGCAGTTTATTTGAACTTTTAGATGAATGATATTGAAATGTGACAGGAAACAATTAGAAGATAATAAAGACAAGAAACCGATTACGTCTACAGTATACCCGAGTAGCTAATCGTCACTTTTTATTCGAATCTTTTGATTTATGGTTATCTGACGACTGGGAACGTCTGGTGGTCAAAACATTTTTTGTTTAGTTTTTGATTTTGATTCTTTTTTCACAATTGTGTGTGTGTGTGTGGATTGTAGTAACCTAGGTACATTGAAAGGCGCTGTCTAG</canonical>
            <polymorphic>AATTTTTGATATCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTTCGATTCTTTCTTCAAGCCAGGTTTTCAACTTTGGTACTAAATGCATGCTCTAATCGCATTTAAATCAGGAAGACATCTTTCTTCTGACTTTTTCAGAATTCAATCTAAAATTTGTCTTTCTCTGGAAATTTCAGACATGACGGGAGTTCTAAAAAAGATCAAAATCCTCAGCCTATTAGATAAAACCATGAGTAACGGACACTCACTTGCGTCTTTGGTAATTCGAATGTCATGATTATTGTCATTTTTGGAACAATATTTTTGCAGACAGATCTGCCTACACACAACTATTTTAGTAGATATTTCGAGATGTTATGAATGAATAAATCCAAAACCTTTTTTGTCTTATCTGTTAAACCAAATTCGTACAGAGATTACTTCCGGCAATGGGGGATCGTAGTTTTCTCAAACGGTGGTCAACTTTTAATCAAATCACAGATTTTCTGGGATTTYCCTATTCGGAAAAGTTTCGAAATCCGAACACGACGAATTCTGTGTCCCGGCAGAAAATGACGTTTTGTAGGAATTTCGGAAGAAAACGAATCGAATTAGTGTGGACATGATGACTATTCTATTTATTTGTTCTGCAACCATTGAGTCAAAAAATACACAAAAAGTTCAAAACGGTTCGGGAGATATGGGACAAGAATCAACATGATGCTATTGGTTTCACGTGTGTGCAGTTTATTTGAACTTTTAGATGAATGATATTGAAATGTGACAGGAAACAATTAGAAGATAATAAAGACAAGAAACCGATTACGTCTACAGTATACCCGAGTAGCTAATCGTCACTTTTTATTCGAATCTTTTGATTTATGGTTATCTGACGACTGGGAACGTCTGGTGGTCAAAACATTTTTTGTTTAGTTTTTGATTTTGATTCTTTTTTCACAATTGTGTGTGTGTGTGTGGATTGTAGTAACCTAGGTACATTGAAAGGCGCTGTCTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTGTTAAACCAAATTCGTACA</pcr_primer_p1>
		<pcr_primer_p2>ATGGTTGCAGAACAAATAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATCTGTTAAACCAAATTCGTACAGAGATTACTTCCGGCAATGGGGGATCGTAGTTTTCTCAAACGGTGGTCAACTTTTAATCAAATCACAGATTTTCTGGGATTTTCCTATTCGGAAAAGTTTCGAAATCCGAACACGACGAATTCTGTGTCCCGGCAGAAAATGACGTTTTGTAGGAATTTCGGAAGAAAACGAATCGAATTAGTGTGGACATGATGACTATTCTATTTATTTGTTCTGCAACCAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTGTTAAACCAAATTCGTACAGAGATTACTTCCGGCAATGGGGGATCGTAGTTTTCTCAAACGGTGGTCAACTTTTAATCAAATCACAGATTTTCTGGGATTTYCCTATTCGGAAAAGTTTCGAAATCCGAACACGACGAATTCTGTGTCCCGGCAGAAAATGACGTTTTGTAGGAATTTCGGAAGAAAACGAATCGAATTAGTGTGGACATGATGACTATTCTATTTATTTGTTCTGCAACCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4193</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>165366</contig_pos>
        <strand>+</strand>
        <context>AACGGACACY[A/C]ACTTGCGTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAGATCAAAATCCTCAGCCTATTAGATAAAACCATGAGTAACGGACACT</left_flank>
        <right_flank>ACTTGCGTCTTTGGTAATTCGAATGTCATGATTATTGTCATTTTTGGAAC</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATTTTGGGAATCTGGAATTCTTGGTAATTTGGAATTCTTGGAATTTGGAAATGTATAGAATTTTTTGATAATGGCAAACTTTTTTAAATATCGGCCACTAGCAAGTCCGTGAACACTGCTGGAAAGCCACCCTTTACTTGAACTTTGAGCTCAAATATCCCAATTTCTATAAAAATATCAAAAACTTGACAACGGGTAAAATGATTCTCATAATATCACCAACATTTTAACATTTTATCATTTGAAAAATTTTTGATATCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTTCGATTCTTTCTTCAAGCCAGGTTTTCAACTTTGGTACTAAATGCATGCTCTAATCGCATTTAAATCAGGAAGACATCTTTCTTCTGACTTTTTCAGAATTCAATCTAAAATTTGTCTTTCTCTGGAAATTTCAGACATGACGGGAGTTCTAAAAAAGATCAAAATCCTCAGCCTATTAGATAAAACCATGAGTAACGGACACTCACTTGCGTCTTTGGTAATTCGAATGTCATGATTATTGTCATTTTTGGAACAATATTTTTGCAGACAGATCTGCCTACACACAACTATTTTAGTAGATATTTCGAGATGTTATGAATGAATAAATCCAAAACCTTTTTTGTCTTATCTGTTAAACCAAATTCGTACAGAGATTACTTCCGGCAATGGGGGATCGTAGTTTTCTCAAACGGTGGTCAACTTTTAATCAAATCACAGATTTTCTGGGATTTTCCTATTCGGAAAAGTTTCGAAATCCGAACACGACGAATTCTGTGTCCCGGCAGAAAATGACGTTTTGTAGGAATTTCGGAAGAAAACGAATCGAATTAGTGTGGACATGATGACTATTCTATTTATTTGTTCTGCAACCATTGAGTCAAAAAATACACAAAAAGTTCAAAACGGTTCGGGAGATATGGGACAAGAATCAACATGATGCTATTGGTTTCACGTGTGTGCAGTTTATTTGAACTTTTAGATGA</canonical>
            <polymorphic>ATATTTTGGGAATCTGGAATTCTTGGTAATTTGGAATTCTTGGAATTTGGAAATGTATAGAATTTTTTGATAATGGCAAACTTTTTTAAATATCGGCCACTAGCAAGTCCGTGAACACTGCTGGAAAGCCACCCTTTACTTGAACTTTGAGCTCAAATATCCCAATTTCTATAAAAATATCAAAAACTTGACAACGGGTAAAATGATTCTCATAATATCACCAACATTTTAACATTTTATCATTTGAAAAATTTTTGATATCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTTCGATTCTTTCTTCAAGCCAGGTTTTCAACTTTGGTACTAAATGCATGCTCTAATCGCATTTAAATCAGGAAGACATCTTTCTTCTGACTTTTTCAGAATTCAATCTAAAATTTGTCTTTCTCTGGAAATTTCAGACATGACGGGAGTTCTAAAAAAGATCAAAATCCTCAGCCTATTAGATAAAACCATGAGTAACGGACACTMACTTGCGTCTTTGGTAATTCGAATGTCATGATTATTGTCATTTTTGGAACAATATTTTTGCAGACAGATCTGCCTACACACAACTATTTTAGTAGATATTTCGAGATGTTATGAATGAATAAATCCAAAACCTTTTTTGTCTTATCTGTTAAACCAAATTCGTACAGAGATTACTTCCGGCAATGGGGGATCGTAGTTTTCTCAAACGGTGGTCAACTTTTAATCAAATCACAGATTTTCTGGGATTTTCCTATTCGGAAAAGTTTCGAAATCCGAACACGACGAATTCTGTGTCCCGGCAGAAAATGACGTTTTGTAGGAATTTCGGAAGAAAACGAATCGAATTAGTGTGGACATGATGACTATTCTATTTATTTGTTCTGCAACCATTGAGTCAAAAAATACACAAAAAGTTCAAAACGGTTCGGGAGATATGGGACAAGAATCAACATGATGCTATTGGTTTCACGTGTGTGCAGTTTATTTGAACTTTTAGATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>277 131 99 89 77 62 57 54 48 24 20 14 14 14 4 4 4 2 2 2 2</canonical_bands>
                <polymorphic_bands>277 131 99 89 81 62 57 54 48 24 20 14 14 14 4 4 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGACTTTTTCAGAATTCAATC</pcr_primer_p1>
		<pcr_primer_p2>AGGTTTTGGATTTATTCATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TCTGACTTTTTCAGAATTCAATCTAAAATTTGTCTTTCTCTGGAAATTTCAGACATGACGGGAGTTCTAAAAAAGATCAAAATCCTCAGCCTATTAGATAAAACCATGAGTAACGGACACTCACTTGCGTCTTTGGTAATTCGAATGTCATGATTATTGTCATTTTTGGAACAATATTTTTGCAGACAGATCTGCCTACACACAACTATTTTAGTAGATATTTCGAGATGTTATGAATGAATAAATCCAAAACCT</canonical_amplicon>
		<polymorphic_amplicon>TCTGACTTTTTCAGAATTCAATCTAAAATTTGTCTTTCTCTGGAAATTTCAGACATGACGGGAGTTCTAAAAAAGATCAAAATCCTCAGCCTATTAGATAAAACCATGAGTAACGGACACTMACTTGCGTCTTTGGTAATTCGAATGTCATGATTATTGTCATTTTTGGAACAATATTTTTGCAGACAGATCTGCCTACACACAACTATTTTAGTAGATATTTCGAGATGTTATGAATGAATAAATCCAAAACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4194</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>165365</contig_pos>
        <strand>+</strand>
        <context>TAACGGACAC[C/T]MACTTGCGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAGATCAAAATCCTCAGCCTATTAGATAAAACCATGAGTAACGGACAC</left_flank>
        <right_flank>CACTTGCGTCTTTGGTAATTCGAATGTCATGATTATTGTCATTTTTGGAA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATTTTGGGAATCTGGAATTCTTGGTAATTTGGAATTCTTGGAATTTGGAAATGTATAGAATTTTTTGATAATGGCAAACTTTTTTAAATATCGGCCACTAGCAAGTCCGTGAACACTGCTGGAAAGCCACCCTTTACTTGAACTTTGAGCTCAAATATCCCAATTTCTATAAAAATATCAAAAACTTGACAACGGGTAAAATGATTCTCATAATATCACCAACATTTTAACATTTTATCATTTGAAAAATTTTTGATATCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTTCGATTCTTTCTTCAAGCCAGGTTTTCAACTTTGGTACTAAATGCATGCTCTAATCGCATTTAAATCAGGAAGACATCTTTCTTCTGACTTTTTCAGAATTCAATCTAAAATTTGTCTTTCTCTGGAAATTTCAGACATGACGGGAGTTCTAAAAAAGATCAAAATCCTCAGCCTATTAGATAAAACCATGAGTAACGGACACTCACTTGCGTCTTTGGTAATTCGAATGTCATGATTATTGTCATTTTTGGAACAATATTTTTGCAGACAGATCTGCCTACACACAACTATTTTAGTAGATATTTCGAGATGTTATGAATGAATAAATCCAAAACCTTTTTTGTCTTATCTGTTAAACCAAATTCGTACAGAGATTACTTCCGGCAATGGGGGATCGTAGTTTTCTCAAACGGTGGTCAACTTTTAATCAAATCACAGATTTTCTGGGATTTTCCTATTCGGAAAAGTTTCGAAATCCGAACACGACGAATTCTGTGTCCCGGCAGAAAATGACGTTTTGTAGGAATTTCGGAAGAAAACGAATCGAATTAGTGTGGACATGATGACTATTCTATTTATTTGTTCTGCAACCATTGAGTCAAAAAATACACAAAAAGTTCAAAACGGTTCGGGAGATATGGGACAAGAATCAACATGATGCTATTGGTTTCACGTGTGTGCAGTTTATTTGAACTTTTAGATG</canonical>
            <polymorphic>AATATTTTGGGAATCTGGAATTCTTGGTAATTTGGAATTCTTGGAATTTGGAAATGTATAGAATTTTTTGATAATGGCAAACTTTTTTAAATATCGGCCACTAGCAAGTCCGTGAACACTGCTGGAAAGCCACCCTTTACTTGAACTTTGAGCTCAAATATCCCAATTTCTATAAAAATATCAAAAACTTGACAACGGGTAAAATGATTCTCATAATATCACCAACATTTTAACATTTTATCATTTGAAAAATTTTTGATATCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTTCGATTCTTTCTTCAAGCCAGGTTTTCAACTTTGGTACTAAATGCATGCTCTAATCGCATTTAAATCAGGAAGACATCTTTCTTCTGACTTTTTCAGAATTCAATCTAAAATTTGTCTTTCTCTGGAAATTTCAGACATGACGGGAGTTCTAAAAAAGATCAAAATCCTCAGCCTATTAGATAAAACCATGAGTAACGGACACYCACTTGCGTCTTTGGTAATTCGAATGTCATGATTATTGTCATTTTTGGAACAATATTTTTGCAGACAGATCTGCCTACACACAACTATTTTAGTAGATATTTCGAGATGTTATGAATGAATAAATCCAAAACCTTTTTTGTCTTATCTGTTAAACCAAATTCGTACAGAGATTACTTCCGGCAATGGGGGATCGTAGTTTTCTCAAACGGTGGTCAACTTTTAATCAAATCACAGATTTTCTGGGATTTTCCTATTCGGAAAAGTTTCGAAATCCGAACACGACGAATTCTGTGTCCCGGCAGAAAATGACGTTTTGTAGGAATTTCGGAAGAAAACGAATCGAATTAGTGTGGACATGATGACTATTCTATTTATTTGTTCTGCAACCATTGAGTCAAAAAATACACAAAAAGTTCAAAACGGTTCGGGAGATATGGGACAAGAATCAACATGATGCTATTGGTTTCACGTGTGTGCAGTTTATTTGAACTTTTAGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGACTTTTTCAGAATTCAATC</pcr_primer_p1>
		<pcr_primer_p2>AGGTTTTGGATTTATTCATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TCTGACTTTTTCAGAATTCAATCTAAAATTTGTCTTTCTCTGGAAATTTCAGACATGACGGGAGTTCTAAAAAAGATCAAAATCCTCAGCCTATTAGATAAAACCATGAGTAACGGACACTCACTTGCGTCTTTGGTAATTCGAATGTCATGATTATTGTCATTTTTGGAACAATATTTTTGCAGACAGATCTGCCTACACACAACTATTTTAGTAGATATTTCGAGATGTTATGAATGAATAAATCCAAAACCT</canonical_amplicon>
		<polymorphic_amplicon>TCTGACTTTTTCAGAATTCAATCTAAAATTTGTCTTTCTCTGGAAATTTCAGACATGACGGGAGTTCTAAAAAAGATCAAAATCCTCAGCCTATTAGATAAAACCATGAGTAACGGACACYCACTTGCGTCTTTGGTAATTCGAATGTCATGATTATTGTCATTTTTGGAACAATATTTTTGCAGACAGATCTGCCTACACACAACTATTTTAGTAGATATTTCGAGATGTTATGAATGAATAAATCCAAAACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4195</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>206677</contig_pos>
        <strand>+</strand>
        <context>CATCCGAGAA[C/T]TACGAGCAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATCTACATGACGTTACTATCTGTTTGTACTAGAGACAAACATCCGAGAA</left_flank>
        <right_flank>TACGAGCAAATACAAGGAAGTTCTTATGACTAACACTACACGCTCTCCCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTTCGGAAGAGAGACTCCTGTAAAGAGAATGACTAGATTTTGTTTGTTGTGACAGGGTAATGAGATAAAAAGAAAATATGTAGGAAGAGAATGAAGAGGATATGTCCCCGTGTAAACAAACACATACGGGACATCTAAAAGGTCGAATGAACTCATCTATATCTCTAATTGGAAGAAAATGTACAAGACTTGATACATAAAAGACTGTGTTGGGAAGAAGAAGTGAATGAGAAGAGGGAGGACAAAAGTGAACGGATTCGATGAGGTTGTGATCAGTGAAGAGGTCAGCAGAAGTCGGTCACATTGAATACGTTGATGTCACGATTCATACCGCAGCATCTGGAAAAGTTCGATGTTTTTGAGGAATCGGAGAACTTGATATTTTCTATAGGCAAAACAAATTAAGGCATTAAGCCAGGATCAAGGATTTGTAGGAAGGTTTGACCGATCTACATGACGTTACTATCTGTTTGTACTAGAGACAAACATCCGAGAACTACGAGCAAATACAAGGAAGTTCTTATGACTAACACTACACGCTCTCCCACAGAAGAATTACGGATTGCAAATTTAGTTTGGATGGTTGATAATTCTAATAATAAATTAATTGCGATATGTGGTAGATAATTCTAATTATTAATTAATTGCGCCGAAGACGCGCCAGTCAGCTGCTTGAAGCACCAGAGGTGCGGCAAACAGGCTGATAGTTTATGATTTTTTCCGATTTTGTGAACTTTCAAGACAATTCAAGATTTTTAAAAATTTAATTAGTGGTTTAAGAATCCTGTACGGTCCTTTTCCAGAAAAAACATTCCGAAAATGCCAATTTTCCAGATTTGATAAACTGATAAATTGATATTCATAAAATCTCAAAAATATTATCAGTTGACAACCTTTTTCAATCTTTGACAGGATCCGAGATAAATTGGTTCAAAGTCAATAGTTAGGGAGCTATTGCAGGGTTACGGTATCTTAAAAATCAAAAATGGTTTTTAAA</canonical>
            <polymorphic>GTTTTTCGGAAGAGAGACTCCTGTAAAGAGAATGACTAGATTTTGTTTGTTGTGACAGGGTAATGAGATAAAAAGAAAATATGTAGGAAGAGAATGAAGAGGATATGTCCCCGTGTAAACAAACACATACGGGACATCTAAAAGGTCGAATGAACTCATCTATATCTCTAATTGGAAGAAAATGTACAAGACTTGATACATAAAAGACTGTGTTGGGAAGAAGAAGTGAATGAGAAGAGGGAGGACAAAAGTGAACGGATTCGATGAGGTTGTGATCAGTGAAGAGGTCAGCAGAAGTCGGTCACATTGAATACGTTGATGTCACGATTCATACCGCAGCATCTGGAAAAGTTCGATGTTTTTGAGGAATCGGAGAACTTGATATTTTCTATAGGCAAAACAAATTAAGGCATTAAGCCAGGATCAAGGATTTGTAGGAAGGTTTGACCGATCTACATGACGTTACTATCTGTTTGTACTAGAGACAAACATCCGAGAAYTACGAGCAAATACAAGGAAGTTCTTATGACTAACACTACACGCTCTCCCACAGAAGAATTACGGATTGCAAATTTAGTTTGGATGGTTGATAATTCTAATAATAAATTAATTGCGATATGTGGTAGATAATTCTAATTATTAATTAATTGCGCCGAAGACGCGCCAGTCAGCTGCTTGAAGCACCAGAGGTGCGGCAAACAGGCTGATAGTTTATGATTTTTTCCGATTTTGTGAACTTTCAAGACAATTCAAGATTTTTAAAAATTTAATTAGTGGTTTAAGAATCCTGTACGGTCCTTTTCCAGAAAAAACATTCCGAAAATGCCAATTTTCCAGATTTGATAAACTGATAAATTGATATTCATAAAATCTCAAAAATATTATCAGTTGACAACCTTTTTCAATCTTTGACAGGATCCGAGATAAATTGGTTCAAAGTCAATAGTTAGGGAGCTATTGCAGGGTTACGGTATCTTAAAAATCAAAAATGGTTTTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATAGGCAAAACAAATTAAGG</pcr_primer_p1>
		<pcr_primer_p2>TTATCTACCACATATCGCAATTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TCTATAGGCAAAACAAATTAAGGCATTAAGCCAGGATCAAGGATTTGTAGGAAGGTTTGACCGATCTACATGACGTTACTATCTGTTTGTACTAGAGACAAACATCCGAGAACTACGAGCAAATACAAGGAAGTTCTTATGACTAACACTACACGCTCTCCCACAGAAGAATTACGGATTGCAAATTTAGTTTGGATGGTTGATAATTCTAATAATAAATTAATTGCGATATGTGGTAGATAA</canonical_amplicon>
		<polymorphic_amplicon>TCTATAGGCAAAACAAATTAAGGCATTAAGCCAGGATCAAGGATTTGTAGGAAGGTTTGACCGATCTACATGACGTTACTATCTGTTTGTACTAGAGACAAACATCCGAGAAYTACGAGCAAATACAAGGAAGTTCTTATGACTAACACTACACGCTCTCCCACAGAAGAATTACGGATTGCAAATTTAGTTTGGATGGTTGATAATTCTAATAATAAATTAATTGCGATATGTGGTAGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4196</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>273874</contig_pos>
        <strand>+</strand>
        <context>TTTCTAACTA[C/T]TACTAATTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGATTTTTCATGTATACCTTTCATAGTGGAACGCTTTCTTTTCTAACTA</left_flank>
        <right_flank>TACTAATTGTGTTTAAGCCAAGATCAGAAATATCAGAAAACCAAAAAACA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGATCCGCGACTTGCTCGCTTATGGAGGAAGGGTATCCACAAGAAACCTGAATGTTGCCAACATGCTATGGACCACGACGGTGCATACTGCTAATCTTGGCTTAACCTGGTTTTTGTACTATTCACAATTAAAACAAGGGACAGTCACTTTCCTGCCAACCTAATATTAGGTTTTGGAGTAAGTTGTTTCATTGTTTTTTGTTTTCTGCCCTCCTCATCTAAATTTAATAATTTGATCCGTTTCCATTCCATCCCACGCACCGAATATAGTGTAAAATTTTGATTGATTATGACTCTCTAATTCGATTGGACTTATTTGTCAAAACACACATTTCACATGAGAATCTGGAATTCTGGATATTCAAAGTATACGTCAAGCGTTTAGAAATTCTATGTTTAGAAATTCTGATCTTTTTAATTTCACCTGCTCATCTTTGAAATCAAAATTTGATTTTTCATGTATACCTTTCATAGTGGAACGCTTTCTTTTCTAACTATTACTAATTGTGTTTAAGCCAAGATCAGAAATATCAGAAAACCAAAAAACAATATCAAAAGTCGTTTCTGTTCCATGATTTCTCAGAATAGCTTTCAAGAGTCTTTTAACAAATAAGGAATTGAGGAGAACTTGAGAAGTTAAGAACGCTATTAATTTGCTGCTTCAAAATAATAAACTCTTCAATTGGCAAGTTGCAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGGCCACTCTATACATACCCTTTTAACCTATATCACTCTTTTCCTGTAAAAAATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATTTTGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGGCTAAAAATGCAAGTGTCGCATGGTCTTCTAGTAAAGTGTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCCCCTACCGATGTTTAATTA</canonical>
            <polymorphic>TTTGATCCGCGACTTGCTCGCTTATGGAGGAAGGGTATCCACAAGAAACCTGAATGTTGCCAACATGCTATGGACCACGACGGTGCATACTGCTAATCTTGGCTTAACCTGGTTTTTGTACTATTCACAATTAAAACAAGGGACAGTCACTTTCCTGCCAACCTAATATTAGGTTTTGGAGTAAGTTGTTTCATTGTTTTTTGTTTTCTGCCCTCCTCATCTAAATTTAATAATTTGATCCGTTTCCATTCCATCCCACGCACCGAATATAGTGTAAAATTTTGATTGATTATGACTCTCTAATTCGATTGGACTTATTTGTCAAAACACACATTTCACATGAGAATCTGGAATTCTGGATATTCAAAGTATACGTCAAGCGTTTAGAAATTCTATGTTTAGAAATTCTGATCTTTTTAATTTCACCTGCTCATCTTTGAAATCAAAATTTGATTTTTCATGTATACCTTTCATAGTGGAACGCTTTCTTTTCTAACTAYTACTAATTGTGTTTAAGCCAAGATCAGAAATATCAGAAAACCAAAAAACAATATCAAAAGTCGTTTCTGTTCCATGATTTCTCAGAATAGCTTTCAAGAGTCTTTTAACAAATAAGGAATTGAGGAGAACTTGAGAAGTTAAGAACGCTATTAATTTGCTGCTTCAAAATAATAAACTCTTCAATTGGCAAGTTGCAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGGCCACTCTATACATACCCTTTTAACCTATATCACTCTTTTCCTGTAAAAAATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATTTTGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGGCTAAAAATGCAAGTGTCGCATGGTCTTCTAGTAAAGTGTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCCCCTACCGATGTTTAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGATCTTTTTAATTTCACCTG</pcr_primer_p1>
		<pcr_primer_p2>TTAATAGCGTTCTTAACTTCTCAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTGATCTTTTTAATTTCACCTGCTCATCTTTGAAATCAAAATTTGATTTTTCATGTATACCTTTCATAGTGGAACGCTTTCTTTTCTAACTATTACTAATTGTGTTTAAGCCAAGATCAGAAATATCAGAAAACCAAAAAACAATATCAAAAGTCGTTTCTGTTCCATGATTTCTCAGAATAGCTTTCAAGAGTCTTTTAACAAATAAGGAATTGAGGAGAACTTGAGAAGTTAAGAACGCTATTAA</canonical_amplicon>
		<polymorphic_amplicon>TCTGATCTTTTTAATTTCACCTGCTCATCTTTGAAATCAAAATTTGATTTTTCATGTATACCTTTCATAGTGGAACGCTTTCTTTTCTAACTAYTACTAATTGTGTTTAAGCCAAGATCAGAAATATCAGAAAACCAAAAAACAATATCAAAAGTCGTTTCTGTTCCATGATTTCTCAGAATAGCTTTCAAGAGTCTTTTAACAAATAAGGAATTGAGGAGAACTTGAGAAGTTAAGAACGCTATTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4197</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>273959</contig_pos>
        <strand>+</strand>
        <context>TGATTTCTCA[A/G]AATAGCTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAAACCAAAAAACAATATCAAAAGTCGTTTCTGTTCCATGATTTCTCA</left_flank>
        <right_flank>AATAGCTTTCAAGAGTCTTTTAACAAATAAGGAATTGAGGAGAACTTGAG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATACTGCTAATCTTGGCTTAACCTGGTTTTTGTACTATTCACAATTAAAACAAGGGACAGTCACTTTCCTGCCAACCTAATATTAGGTTTTGGAGTAAGTTGTTTCATTGTTTTTTGTTTTCTGCCCTCCTCATCTAAATTTAATAATTTGATCCGTTTCCATTCCATCCCACGCACCGAATATAGTGTAAAATTTTGATTGATTATGACTCTCTAATTCGATTGGACTTATTTGTCAAAACACACATTTCACATGAGAATCTGGAATTCTGGATATTCAAAGTATACGTCAAGCGTTTAGAAATTCTATGTTTAGAAATTCTGATCTTTTTAATTTCACCTGCTCATCTTTGAAATCAAAATTTGATTTTTCATGTATACCTTTCATAGTGGAACGCTTTCTTTTCTAACTATTACTAATTGTGTTTAAGCCAAGATCAGAAATATCAGAAAACCAAAAAACAATATCAAAAGTCGTTTCTGTTCCATGATTTCTCAGAATAGCTTTCAAGAGTCTTTTAACAAATAAGGAATTGAGGAGAACTTGAGAAGTTAAGAACGCTATTAATTTGCTGCTTCAAAATAATAAACTCTTCAATTGGCAAGTTGCAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGGCCACTCTATACATACCCTTTTAACCTATATCACTCTTTTCCTGTAAAAAATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATTTTGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGGCTAAAAATGCAAGTGTCGCATGGTCTTCTAGTAAAGTGTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCCCCTACCGATGTTTAATTAGAATGTGAATTTAGAATATCAAAACTTTTGATCTTTTATTTTTCACACAAAGGCGTTCGTGACTTGTTTCATGATCAGCCAACCA</canonical>
            <polymorphic>CATACTGCTAATCTTGGCTTAACCTGGTTTTTGTACTATTCACAATTAAAACAAGGGACAGTCACTTTCCTGCCAACCTAATATTAGGTTTTGGAGTAAGTTGTTTCATTGTTTTTTGTTTTCTGCCCTCCTCATCTAAATTTAATAATTTGATCCGTTTCCATTCCATCCCACGCACCGAATATAGTGTAAAATTTTGATTGATTATGACTCTCTAATTCGATTGGACTTATTTGTCAAAACACACATTTCACATGAGAATCTGGAATTCTGGATATTCAAAGTATACGTCAAGCGTTTAGAAATTCTATGTTTAGAAATTCTGATCTTTTTAATTTCACCTGCTCATCTTTGAAATCAAAATTTGATTTTTCATGTATACCTTTCATAGTGGAACGCTTTCTTTTCTAACTATTACTAATTGTGTTTAAGCCAAGATCAGAAATATCAGAAAACCAAAAAACAATATCAAAAGTCGTTTCTGTTCCATGATTTCTCARAATAGCTTTCAAGAGTCTTTTAACAAATAAGGAATTGAGGAGAACTTGAGAAGTTAAGAACGCTATTAATTTGCTGCTTCAAAATAATAAACTCTTCAATTGGCAAGTTGCAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGGCCACTCTATACATACCCTTTTAACCTATATCACTCTTTTCCTGTAAAAAATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATTTTGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGGCTAAAAATGCAAGTGTCGCATGGTCTTCTAGTAAAGTGTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCCCCTACCGATGTTTAATTAGAATGTGAATTTAGAATATCAAAACTTTTGATCTTTTATTTTTCACACAAAGGCGTTCGTGACTTGTTTCATGATCAGCCAACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>501 324 117 49 9</canonical_bands>
                <polymorphic_bands>550 324 117 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGATCTTTTTAATTTCACCTG</pcr_primer_p1>
		<pcr_primer_p2>TTAATAGCGTTCTTAACTTCTCAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTGATCTTTTTAATTTCACCTGCTCATCTTTGAAATCAAAATTTGATTTTTCATGTATACCTTTCATAGTGGAACGCTTTCTTTTCTAACTATTACTAATTGTGTTTAAGCCAAGATCAGAAATATCAGAAAACCAAAAAACAATATCAAAAGTCGTTTCTGTTCCATGATTTCTCAGAATAGCTTTCAAGAGTCTTTTAACAAATAAGGAATTGAGGAGAACTTGAGAAGTTAAGAACGCTATTAA</canonical_amplicon>
		<polymorphic_amplicon>TCTGATCTTTTTAATTTCACCTGCTCATCTTTGAAATCAAAATTTGATTTTTCATGTATACCTTTCATAGTGGAACGCTTTCTTTTCTAACTATTACTAATTGTGTTTAAGCCAAGATCAGAAATATCAGAAAACCAAAAAACAATATCAAAAGTCGTTTCTGTTCCATGATTTCTCARAATAGCTTTCAAGAGTCTTTTAACAAATAAGGAATTGAGGAGAACTTGAGAAGTTAAGAACGCTATTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4198</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>274120</contig_pos>
        <strand></strand>
        <context>taatgcaagg[C/T]cactctatac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGG</left_flank>
        <right_flank>CACTCTATACATACCCTTTTAACCTATATCACTCTTTTCCTGTAAAAAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTCCATCCCACGCACCGAATATAGTGTAAAATTTTGATTGATTATGACTCTCTAATTCGATTGGACTTATTTGTCAAAACACACATTTCACATGAGAATCTGGAATTCTGGATATTCAAAGTATACGTCAAGCGTTTAGAAATTCTATGTTTAGAAATTCTGATCTTTTTAATTTCACCTGCTCATCTTTGAAATCAAAATTTGATTTTTCATGTATACCTTTCATAGTGGAACGCTTTCTTTTCTAACTATTACTAATTGTGTTTAAGCCAAGATCAGAAATATCAGAAAACCAAAAAACAATATCAAAAGTCGTTTCTGTTCCATGATTTCTCAGAATAGCTTTCAAGAGTCTTTTAACAAATAAGGAATTGAGGAGAACTTGAGAAGTTAAGAACGCTATTAATTTGCTGCTTCAAAATAATAAACTCTTCAATTGGCAAGTTGCAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGGCCACTCTATACATACCCTTTTAACCTATATCACTCTTTTCCTGTAAAAAATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATTTTGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGGCTAAAAATGCAAGTGTCGCATGGTCTTCTAGTAAAGTGTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCCCCTACCGATGTTTAATTAGAATGTGAATTTAGAATATCAAAACTTTTGATCTTTTATTTTTCACACAAAGGCGTTCGTGACTTGTTTCATGATCAGCCAACCATTGTTTTTATGTCTAGAATTTATTATCTTTTCTCTTCTTCAACTGATCTTCATCTTCATTTCAGAACATAACAGTTATGCATTACCTCGTATACTACAACTCCAATCAATCAAAGTTAGATGACACTTGGGTTTATTACCAAATCCTGACATATTTTGAAT</canonical>
            <polymorphic>CATTCCATCCCACGCACCGAATATAGTGTAAAATTTTGATTGATTATGACTCTCTAATTCGATTGGACTTATTTGTCAAAACACACATTTCACATGAGAATCTGGAATTCTGGATATTCAAAGTATACGTCAAGCGTTTAGAAATTCTATGTTTAGAAATTCTGATCTTTTTAATTTCACCTGCTCATCTTTGAAATCAAAATTTGATTTTTCATGTATACCTTTCATAGTGGAACGCTTTCTTTTCTAACTATTACTAATTGTGTTTAAGCCAAGATCAGAAATATCAGAAAACCAAAAAACAATATCAAAAGTCGTTTCTGTTCCATGATTTCTCAGAATAGCTTTCAAGAGTCTTTTAACAAATAAGGAATTGAGGAGAACTTGAGAAGTTAAGAACGCTATTAATTTGCTGCTTCAAAATAATAAACTCTTCAATTGGCAAGTTGCAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGGYCACTCTATACATACCCTTTTAACCTATATCACTCTTTTCCTGTAAAAAATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATTTTGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGGCTAAAAATGCAAGTGTCGCATGGTCTTCTAGTAAAGTGTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCCCCTACCGATGTTTAATTAGAATGTGAATTTAGAATATCAAAACTTTTGATCTTTTATTTTTCACACAAAGGCGTTCGTGACTTGTTTCATGATCAGCCAACCATTGTTTTTATGTCTAGAATTTATTATCTTTTCTCTTCTTCAACTGATCTTCATCTTCATTTCAGAACATAACAGTTATGCATTACCTCGTATACTACAACTCCAATCAATCAAAGTTAGATGACACTTGGGTTTATTACCAAATCCTGACATATTTTGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>271 168 155 152 98 73 53 30</canonical_bands>
                <polymorphic_bands>307 271 168 98 73 53 30</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGGCAAGTTGCAGTTTA</pcr_primer_p1>
		<pcr_primer_p2>GGCTGAAATGAATACTGTAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>AATTGGCAAGTTGCAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGGCCACTCTATACATACCCTTTTAACCTATATCACTCTTTTCCTGTAAAAAATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATTTTGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGGCTAAAAATGCAAGTGTCGCATGGTCTTCTAGTAAAGTGTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCC</canonical_amplicon>
		<polymorphic_amplicon>AATTGGCAAGTTGCAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGGYCACTCTATACATACCCTTTTAACCTATATCACTCTTTTCCTGTAAAAAATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATTTTGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGGCTAAAAATGCAAGTGTCGCATGGTCTTCTAGTAAAGTGTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4199</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>274359</contig_pos>
        <strand>+</strand>
        <context>TTTCAGCCCC[A/T]ACCGATGTTY</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCCCC</left_flank>
        <right_flank>ACCGATGTTTAATTAGAATGTGAATTTAGAATATCAAAACTTTTGATCTT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTTTCTAACTATTACTAATTGTGTTTAAGCCAAGATCAGAAATATCAGAAAACCAAAAAACAATATCAAAAGTCGTTTCTGTTCCATGATTTCTCAGAATAGCTTTCAAGAGTCTTTTAACAAATAAGGAATTGAGGAGAACTTGAGAAGTTAAGAACGCTATTAATTTGCTGCTTCAAAATAATAAACTCTTCAATTGGCAAGTTGCAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGGCCACTCTATACATACCCTTTTAACCTATATCACTCTTTTCCTGTAAAAAATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATTTTGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGGCTAAAAATGCAAGTGTCGCATGGTCTTCTAGTAAAGTGTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCCCCTACCGATGTTTAATTAGAATGTGAATTTAGAATATCAAAACTTTTGATCTTTTATTTTTCACACAAAGGCGTTCGTGACTTGTTTCATGATCAGCCAACCATTGTTTTTATGTCTAGAATTTATTATCTTTTCTCTTCTTCAACTGATCTTCATCTTCATTTCAGAACATAACAGTTATGCATTACCTCGTATACTACAACTCCAATCAATCAAAGTTAGATGACACTTGGGTTTATTACCAAATCCTGACATATTTTGAATTTGCTTGTATTTGCTTCAGGTGAATTTTTTGAATATCTTGTTCATTATTATCTCTCAAATTCCAGTTATCCTCCAATTATATTCCTTGGCTATCAACTTTTCCAACACAGAATATTCCATCAGAATCTTCAAAATTGTGTGAGAGCTGCGGTTGTAGAGTACCTGATTCAGTTGACATCTCGAAGTATTCAAATCTTTTTGATTTTCAATTCAGAAGAAAATGGATTGGGTAAGAATTC</canonical>
            <polymorphic>TTCTTTTCTAACTATTACTAATTGTGTTTAAGCCAAGATCAGAAATATCAGAAAACCAAAAAACAATATCAAAAGTCGTTTCTGTTCCATGATTTCTCAGAATAGCTTTCAAGAGTCTTTTAACAAATAAGGAATTGAGGAGAACTTGAGAAGTTAAGAACGCTATTAATTTGCTGCTTCAAAATAATAAACTCTTCAATTGGCAAGTTGCAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGGCCACTCTATACATACCCTTTTAACCTATATCACTCTTTTCCTGTAAAAAATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATTTTGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGGCTAAAAATGCAAGTGTCGCATGGTCTTCTAGTAAAGTGTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCCCCWACCGATGTTTAATTAGAATGTGAATTTAGAATATCAAAACTTTTGATCTTTTATTTTTCACACAAAGGCGTTCGTGACTTGTTTCATGATCAGCCAACCATTGTTTTTATGTCTAGAATTTATTATCTTTTCTCTTCTTCAACTGATCTTCATCTTCATTTCAGAACATAACAGTTATGCATTACCTCGTATACTACAACTCCAATCAATCAAAGTTAGATGACACTTGGGTTTATTACCAAATCCTGACATATTTTGAATTTGCTTGTATTTGCTTCAGGTGAATTTTTTGAATATCTTGTTCATTATTATCTCTCAAATTCCAGTTATCCTCCAATTATATTCCTTGGCTATCAACTTTTCCAACACAGAATATTCCATCAGAATCTTCAAAATTGTGTGAGAGCTGCGGTTGTAGAGTACCTGATTCAGTTGACATCTCGAAGTATTCAAATCTTTTTGATTTTCAATTCAGAAGAAAATGGATTGGGTAAGAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGGCAAGTTGCAGTTTA</pcr_primer_p1>
		<pcr_primer_p2>GCTGATCATGAAACAAGTCAC</pcr_primer_p2>
		<pcr_amplicon_size>397</pcr_amplicon_size>
		<canonical_amplicon>AATTGGCAAGTTGCAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGGCCACTCTATACATACCCTTTTAACCTATATCACTCTTTTCCTGTAAAAAATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATTTTGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGGCTAAAAATGCAAGTGTCGCATGGTCTTCTAGTAAAGTGTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCCCCTACCGATGTTTAATTAGAATGTGAATTTAGAATATCAAAACTTTTGATCTTTTATTTTTCACACAAAGGCGTTCGTGACTTGTTTCATGATCAGC</canonical_amplicon>
		<polymorphic_amplicon>AATTGGCAAGTTGCAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGGCCACTCTATACATACCCTTTTAACCTATATCACTCTTTTCCTGTAAAAAATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATTTTGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGGCTAAAAATGCAAGTGTCGCATGGTCTTCTAGTAAAGTGTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCCCCWACCGATGTTTAATTAGAATGTGAATTTAGAATATCAAAACTTTTGATCTTTTATTTTTCACACAAAGGCGTTCGTGACTTGTTTCATGATCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4200</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>274369</contig_pos>
        <strand>+</strand>
        <context>WACCGATGTT[C/T]AATTAGAATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCCCCTACCGATGTT</left_flank>
        <right_flank>AATTAGAATGTGAATTTAGAATATCAAAACTTTTGATCTTTTATTTTTCA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTATTACTAATTGTGTTTAAGCCAAGATCAGAAATATCAGAAAACCAAAAAACAATATCAAAAGTCGTTTCTGTTCCATGATTTCTCAGAATAGCTTTCAAGAGTCTTTTAACAAATAAGGAATTGAGGAGAACTTGAGAAGTTAAGAACGCTATTAATTTGCTGCTTCAAAATAATAAACTCTTCAATTGGCAAGTTGCAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGGCCACTCTATACATACCCTTTTAACCTATATCACTCTTTTCCTGTAAAAAATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATTTTGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGGCTAAAAATGCAAGTGTCGCATGGTCTTCTAGTAAAGTGTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCCCCTACCGATGTTTAATTAGAATGTGAATTTAGAATATCAAAACTTTTGATCTTTTATTTTTCACACAAAGGCGTTCGTGACTTGTTTCATGATCAGCCAACCATTGTTTTTATGTCTAGAATTTATTATCTTTTCTCTTCTTCAACTGATCTTCATCTTCATTTCAGAACATAACAGTTATGCATTACCTCGTATACTACAACTCCAATCAATCAAAGTTAGATGACACTTGGGTTTATTACCAAATCCTGACATATTTTGAATTTGCTTGTATTTGCTTCAGGTGAATTTTTTGAATATCTTGTTCATTATTATCTCTCAAATTCCAGTTATCCTCCAATTATATTCCTTGGCTATCAACTTTTCCAACACAGAATATTCCATCAGAATCTTCAAAATTGTGTGAGAGCTGCGGTTGTAGAGTACCTGATTCAGTTGACATCTCGAAGTATTCAAATCTTTTTGATTTTCAATTCAGAAGAAAATGGATTGGGTAAGAATTCAAACTTTTAG</canonical>
            <polymorphic>ACTATTACTAATTGTGTTTAAGCCAAGATCAGAAATATCAGAAAACCAAAAAACAATATCAAAAGTCGTTTCTGTTCCATGATTTCTCAGAATAGCTTTCAAGAGTCTTTTAACAAATAAGGAATTGAGGAGAACTTGAGAAGTTAAGAACGCTATTAATTTGCTGCTTCAAAATAATAAACTCTTCAATTGGCAAGTTGCAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGGCCACTCTATACATACCCTTTTAACCTATATCACTCTTTTCCTGTAAAAAATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATTTTGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGGCTAAAAATGCAAGTGTCGCATGGTCTTCTAGTAAAGTGTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCCCCTACCGATGTTYAATTAGAATGTGAATTTAGAATATCAAAACTTTTGATCTTTTATTTTTCACACAAAGGCGTTCGTGACTTGTTTCATGATCAGCCAACCATTGTTTTTATGTCTAGAATTTATTATCTTTTCTCTTCTTCAACTGATCTTCATCTTCATTTCAGAACATAACAGTTATGCATTACCTCGTATACTACAACTCCAATCAATCAAAGTTAGATGACACTTGGGTTTATTACCAAATCCTGACATATTTTGAATTTGCTTGTATTTGCTTCAGGTGAATTTTTTGAATATCTTGTTCATTATTATCTCTCAAATTCCAGTTATCCTCCAATTATATTCCTTGGCTATCAACTTTTCCAACACAGAATATTCCATCAGAATCTTCAAAATTGTGTGAGAGCTGCGGTTGTAGAGTACCTGATTCAGTTGACATCTCGAAGTATTCAAATCTTTTTGATTTTCAATTCAGAAGAAAATGGATTGGGTAAGAATTCAAACTTTTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>501 229 92 57 49 34 18 12 8</canonical_bands>
                <polymorphic_bands>730 92 57 49 34 18 12 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGGCAAGTTGCAGTTTA</pcr_primer_p1>
		<pcr_primer_p2>GCTGATCATGAAACAAGTCAC</pcr_primer_p2>
		<pcr_amplicon_size>397</pcr_amplicon_size>
		<canonical_amplicon>AATTGGCAAGTTGCAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGGCCACTCTATACATACCCTTTTAACCTATATCACTCTTTTCCTGTAAAAAATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATTTTGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGGCTAAAAATGCAAGTGTCGCATGGTCTTCTAGTAAAGTGTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCCCCTACCGATGTTTAATTAGAATGTGAATTTAGAATATCAAAACTTTTGATCTTTTATTTTTCACACAAAGGCGTTCGTGACTTGTTTCATGATCAGC</canonical_amplicon>
		<polymorphic_amplicon>AATTGGCAAGTTGCAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGGCCACTCTATACATACCCTTTTAACCTATATCACTCTTTTCCTGTAAAAAATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATTTTGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGGCTAAAAATGCAAGTGTCGCATGGTCTTCTAGTAAAGTGTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCCCCTACCGATGTTYAATTAGAATGTGAATTTAGAATATCAAAACTTTTGATCTTTTATTTTTCACACAAAGGCGTTCGTGACTTGTTTCATGATCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4201</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>274399</contig_pos>
        <strand>+</strand>
        <context>AATATCAAAA[C/T]TTTTGATCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCAGCCCCTACCGATGTTTAATTAGAATGTGAATTTAGAATATCAAAA</left_flank>
        <right_flank>TTTTGATCTTTTATTTTTCACACAAAGGCGTTCGTGACTTGTTTCATGAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAATATCAGAAAACCAAAAAACAATATCAAAAGTCGTTTCTGTTCCATGATTTCTCAGAATAGCTTTCAAGAGTCTTTTAACAAATAAGGAATTGAGGAGAACTTGAGAAGTTAAGAACGCTATTAATTTGCTGCTTCAAAATAATAAACTCTTCAATTGGCAAGTTGCAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGGCCACTCTATACATACCCTTTTAACCTATATCACTCTTTTCCTGTAAAAAATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATTTTGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGGCTAAAAATGCAAGTGTCGCATGGTCTTCTAGTAAAGTGTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCCCCTACCGATGTTTAATTAGAATGTGAATTTAGAATATCAAAACTTTTGATCTTTTATTTTTCACACAAAGGCGTTCGTGACTTGTTTCATGATCAGCCAACCATTGTTTTTATGTCTAGAATTTATTATCTTTTCTCTTCTTCAACTGATCTTCATCTTCATTTCAGAACATAACAGTTATGCATTACCTCGTATACTACAACTCCAATCAATCAAAGTTAGATGACACTTGGGTTTATTACCAAATCCTGACATATTTTGAATTTGCTTGTATTTGCTTCAGGTGAATTTTTTGAATATCTTGTTCATTATTATCTCTCAAATTCCAGTTATCCTCCAATTATATTCCTTGGCTATCAACTTTTCCAACACAGAATATTCCATCAGAATCTTCAAAATTGTGTGAGAGCTGCGGTTGTAGAGTACCTGATTCAGTTGACATCTCGAAGTATTCAAATCTTTTTGATTTTCAATTCAGAAGAAAATGGATTGGGTAAGAATTCAAACTTTTAGTTTTTATCAGCAAAGTTTTTTTATTTTCAG</canonical>
            <polymorphic>AGAAATATCAGAAAACCAAAAAACAATATCAAAAGTCGTTTCTGTTCCATGATTTCTCAGAATAGCTTTCAAGAGTCTTTTAACAAATAAGGAATTGAGGAGAACTTGAGAAGTTAAGAACGCTATTAATTTGCTGCTTCAAAATAATAAACTCTTCAATTGGCAAGTTGCAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGGCCACTCTATACATACCCTTTTAACCTATATCACTCTTTTCCTGTAAAAAATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATTTTGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGGCTAAAAATGCAAGTGTCGCATGGTCTTCTAGTAAAGTGTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCCCCTACCGATGTTTAATTAGAATGTGAATTTAGAATATCAAAAYTTTTGATCTTTTATTTTTCACACAAAGGCGTTCGTGACTTGTTTCATGATCAGCCAACCATTGTTTTTATGTCTAGAATTTATTATCTTTTCTCTTCTTCAACTGATCTTCATCTTCATTTCAGAACATAACAGTTATGCATTACCTCGTATACTACAACTCCAATCAATCAAAGTTAGATGACACTTGGGTTTATTACCAAATCCTGACATATTTTGAATTTGCTTGTATTTGCTTCAGGTGAATTTTTTGAATATCTTGTTCATTATTATCTCTCAAATTCCAGTTATCCTCCAATTATATTCCTTGGCTATCAACTTTTCCAACACAGAATATTCCATCAGAATCTTCAAAATTGTGTGAGAGCTGCGGTTGTAGAGTACCTGATTCAGTTGACATCTCGAAGTATTCAAATCTTTTTGATTTTCAATTCAGAAGAAAATGGATTGGGTAAGAATTCAAACTTTTAGTTTTTATCAGCAAAGTTTTTTTATTTTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTTCTTGTAGTTCTACAGTATTCA</pcr_primer_p1>
		<pcr_primer_p2>CTTTGATTGATTGGAGTTGTAGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGCTTCTTGTAGTTCTACAGTATTCATTTCAGCCCCTACCGATGTTTAATTAGAATGTGAATTTAGAATATCAAAACTTTTGATCTTTTATTTTTCACACAAAGGCGTTCGTGACTTGTTTCATGATCAGCCAACCATTGTTTTTATGTCTAGAATTTATTATCTTTTCTCTTCTTCAACTGATCTTCATCTTCATTTCAGAACATAACAGTTATGCATTACCTCGTATACTACAACTCCAATCAATCAAAG</canonical_amplicon>
		<polymorphic_amplicon>AGCTTCTTGTAGTTCTACAGTATTCATTTCAGCCCCTACCGATGTTTAATTAGAATGTGAATTTAGAATATCAAAAYTTTTGATCTTTTATTTTTCACACAAAGGCGTTCGTGACTTGTTTCATGATCAGCCAACCATTGTTTTTATGTCTAGAATTTATTATCTTTTCTCTTCTTCAACTGATCTTCATCTTCATTTCAGAACATAACAGTTATGCATTACCTCGTATACTACAACTCCAATCAATCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4202</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>275939</contig_pos>
        <strand>+</strand>
        <context>TTCAGATGAG[A/C]ATTTTAAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGGTAGATATAGTGAAAACTATAATAATTATTATTTGAATTTCAGATGAG</left_flank>
        <right_flank>ATTTTAAATCCAGTATCTCCTTTTCCCGAAGCACTAAACGAAAAACCGTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCTTCTGTTGTCCTGGCAGTTATCGAAAAGTACAATTATACAAGACTTCATGAAAGTTCGAATTTACGGAAAAGCAAGAAAGAATATTCGTTAGCAGAGCGATTTCAGATTTCAGAAAACATACGGGTCTGTGAGGTATAATTTCTTTCTTTTGTAAAAAAATCTACAATGTGAATATCCAGCTCATGAAAACTATTATAAATGTGGTTGCACTCTTCAATTTGTTATCAACAGCATCTGCTGCTCTTGACAACTTTAAATTCTCCCAATCATTTTTGAATGTAGCTGCTACTTTTTTCAACTTTTGCGTCCTCACGTAAGGCTTCAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAATATTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGTGCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGTAGATATAGTGAAAACTATAATAATTATTATTTGAATTTCAGATGAGAATTTTAAATCCAGTATCTCCTTTTCCCGAAGCACTAAACGAAAAACCGTGCCAAATGGCGGCCAAAGAGACGGATGAATATTTCACACAGCTTCGGAAACAGTGGCTCTAGAATCTGGATATTGAATTTTCTAAAACTAATTTATTTTGACACTTATTGCTTTGTATTATTTATATGCATTTAAAATTCGGTTCCTGCAATTTCGGTTCCTGCAAAAGATAACTAGAAGTGATCAACTGATAAAATATTTTTGAAGTTATGATAAACATTTTGTCAGTTGACCACTTTTCTCATCTTCGACAGGAACCGAGATATATGAGCTCATAGTTGACTGTTTGGGTGGCTATCTATCAGAGTTATACGGTATTCTTGAACTTTCAATTCTAGGAAGTCCAGAATTGAATATCATTCTAGAATTGAATACCATTTTCTTGATGTATTTGGAAAAGCCCCGAACATTCTAGAACTTTCTAGAAAATCCTACTATCATACAAAGAAAA</canonical>
            <polymorphic>TATCTTCTGTTGTCCTGGCAGTTATCGAAAAGTACAATTATACAAGACTTCATGAAAGTTCGAATTTACGGAAAAGCAAGAAAGAATATTCGTTAGCAGAGCGATTTCAGATTTCAGAAAACATACGGGTCTGTGAGGTATAATTTCTTTCTTTTGTAAAAAAATCTACAATGTGAATATCCAGCTCATGAAAACTATTATAAATGTGGTTGCACTCTTCAATTTGTTATCAACAGCATCTGCTGCTCTTGACAACTTTAAATTCTCCCAATCATTTTTGAATGTAGCTGCTACTTTTTTCAACTTTTGCGTCCTCACGTAAGGCTTCAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAATATTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGTGCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGTAGATATAGTGAAAACTATAATAATTATTATTTGAATTTCAGATGAGMATTTTAAATCCAGTATCTCCTTTTCCCGAAGCACTAAACGAAAAACCGTGCCAAATGGCGGCCAAAGAGACGGATGAATATTTCACACAGCTTCGGAAACAGTGGCTCTAGAATCTGGATATTGAATTTTCTAAAACTAATTTATTTTGACACTTATTGCTTTGTATTATTTATATGCATTTAAAATTCGGTTCCTGCAATTTCGGTTCCTGCAAAAGATAACTAGAAGTGATCAACTGATAAAATATTTTTGAAGTTATGATAAACATTTTGTCAGTTGACCACTTTTCTCATCTTCGACAGGAACCGAGATATATGAGCTCATAGTTGACTGTTTGGGTGGCTATCTATCAGAGTTATACGGTATTCTTGAACTTTCAATTCTAGGAAGTCCAGAATTGAATATCATTCTAGAATTGAATACCATTTTCTTGATGTATTTGGAAAAGCCCCGAACATTCTAGAACTTTCTAGAAAATCCTACTATCATACAAAGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>316 226 198 125 62 60 13</canonical_bands>
                <polymorphic_bands>316 226 198 138 62 60</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>181 126 125 88 86 79 79 46 40 35 27 18 17 14 14 13 12</canonical_bands>
                <polymorphic_bands>181 138 126 88 86 79 79 46 40 35 27 18 17 14 14 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATCTCTTGTTTTCTTTCTGTT</pcr_primer_p1>
		<pcr_primer_p2>AATATCCAGATTCTAGAGCCACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGTGCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGTAGATATAGTGAAAACTATAATAATTATTATTTGAATTTCAGATGAGAATTTTAAATCCAGTATCTCCTTTTCCCGAAGCACTAAACGAAAAACCGTGCCAAATGGCGGCCAAAGAGACGGATGAATATTTCACACAGCTTCGGAAACAGTGGCTCTAGAATCTGGATATT</canonical_amplicon>
		<polymorphic_amplicon>GGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGTGCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGTAGATATAGTGAAAACTATAATAATTATTATTTGAATTTCAGATGAGMATTTTAAATCCAGTATCTCCTTTTCCCGAAGCACTAAACGAAAAACCGTGCCAAATGGCGGCCAAAGAGACGGATGAATATTTCACACAGCTTCGGAAACAGTGGCTCTAGAATCTGGATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4203</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>275851</contig_pos>
        <strand>+</strand>
        <context>ATTATTTGGT[C/G]CCCCAGTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TATTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGT</left_flank>
        <right_flank>CCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGTAGATATAGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGAAACTTAAAGTCTCTCTAAATCATTTTTTTTCCAGCCGAATCTACATTAGTCTATCATATAATCGTTCTTGTCATCAATGGAATATCTTCTGTTGTCCTGGCAGTTATCGAAAAGTACAATTATACAAGACTTCATGAAAGTTCGAATTTACGGAAAAGCAAGAAAGAATATTCGTTAGCAGAGCGATTTCAGATTTCAGAAAACATACGGGTCTGTGAGGTATAATTTCTTTCTTTTGTAAAAAAATCTACAATGTGAATATCCAGCTCATGAAAACTATTATAAATGTGGTTGCACTCTTCAATTTGTTATCAACAGCATCTGCTGCTCTTGACAACTTTAAATTCTCCCAATCATTTTTGAATGTAGCTGCTACTTTTTTCAACTTTTGCGTCCTCACGTAAGGCTTCAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAATATTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGTGCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGTAGATATAGTGAAAACTATAATAATTATTATTTGAATTTCAGATGAGAATTTTAAATCCAGTATCTCCTTTTCCCGAAGCACTAAACGAAAAACCGTGCCAAATGGCGGCCAAAGAGACGGATGAATATTTCACACAGCTTCGGAAACAGTGGCTCTAGAATCTGGATATTGAATTTTCTAAAACTAATTTATTTTGACACTTATTGCTTTGTATTATTTATATGCATTTAAAATTCGGTTCCTGCAATTTCGGTTCCTGCAAAAGATAACTAGAAGTGATCAACTGATAAAATATTTTTGAAGTTATGATAAACATTTTGTCAGTTGACCACTTTTCTCATCTTCGACAGGAACCGAGATATATGAGCTCATAGTTGACTGTTTGGGTGGCTATCTATCAGAGTTATACGGTATTCTTGAACTTTCAATTCTAGGAAGTCCAGAATTGAATATCATTCT</canonical>
            <polymorphic>TTTTGAAACTTAAAGTCTCTCTAAATCATTTTTTTTCCAGCCGAATCTACATTAGTCTATCATATAATCGTTCTTGTCATCAATGGAATATCTTCTGTTGTCCTGGCAGTTATCGAAAAGTACAATTATACAAGACTTCATGAAAGTTCGAATTTACGGAAAAGCAAGAAAGAATATTCGTTAGCAGAGCGATTTCAGATTTCAGAAAACATACGGGTCTGTGAGGTATAATTTCTTTCTTTTGTAAAAAAATCTACAATGTGAATATCCAGCTCATGAAAACTATTATAAATGTGGTTGCACTCTTCAATTTGTTATCAACAGCATCTGCTGCTCTTGACAACTTTAAATTCTCCCAATCATTTTTGAATGTAGCTGCTACTTTTTTCAACTTTTGCGTCCTCACGTAAGGCTTCAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAATATTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGTSCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGTAGATATAGTGAAAACTATAATAATTATTATTTGAATTTCAGATGAGAATTTTAAATCCAGTATCTCCTTTTCCCGAAGCACTAAACGAAAAACCGTGCCAAATGGCGGCCAAAGAGACGGATGAATATTTCACACAGCTTCGGAAACAGTGGCTCTAGAATCTGGATATTGAATTTTCTAAAACTAATTTATTTTGACACTTATTGCTTTGTATTATTTATATGCATTTAAAATTCGGTTCCTGCAATTTCGGTTCCTGCAAAAGATAACTAGAAGTGATCAACTGATAAAATATTTTTGAAGTTATGATAAACATTTTGTCAGTTGACCACTTTTCTCATCTTCGACAGGAACCGAGATATATGAGCTCATAGTTGACTGTTTGGGTGGCTATCTATCAGAGTTATACGGTATTCTTGAACTTTCAATTCTAGGAAGTCCAGAATTGAATATCATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>502 408 90</canonical_bands>
                <polymorphic_bands>910 90</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>223 103 95 79 70 70 58 53 51 48 40 35 33 17 17 6 2</canonical_bands>
                <polymorphic_bands>223 146 103 79 70 70 58 53 48 40 35 33 17 17 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAATCATTTTTGAATGTAGC</pcr_primer_p1>
		<pcr_primer_p2>GGAAAAGGAGATACTGGATTTA</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>CCAATCATTTTTGAATGTAGCTGCTACTTTTTTCAACTTTTGCGTCCTCACGTAAGGCTTCAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAATATTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGTGCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGTAGATATAGTGAAAACTATAATAATTATTATTTGAATTTCAGATGAGAATTTTAAATCCAGTATCTCCTTTTCC</canonical_amplicon>
		<polymorphic_amplicon>CCAATCATTTTTGAATGTAGCTGCTACTTTTTTCAACTTTTGCGTCCTCACGTAAGGCTTCAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAATATTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGTSCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGTAGATATAGTGAAAACTATAATAATTATTATTTGAATTTCAGATGAGAATTTTAAATCCAGTATCTCCTTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4204</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>275839</contig_pos>
        <strand>+</strand>
        <context>TCTTTCTGTT[C/T]TATTATTTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGTATAAAAATATTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTT</left_flank>
        <right_flank>TATTATTTGGTGCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGTGTAAGTCTTTTGAAACTTAAAGTCTCTCTAAATCATTTTTTTTCCAGCCGAATCTACATTAGTCTATCATATAATCGTTCTTGTCATCAATGGAATATCTTCTGTTGTCCTGGCAGTTATCGAAAAGTACAATTATACAAGACTTCATGAAAGTTCGAATTTACGGAAAAGCAAGAAAGAATATTCGTTAGCAGAGCGATTTCAGATTTCAGAAAACATACGGGTCTGTGAGGTATAATTTCTTTCTTTTGTAAAAAAATCTACAATGTGAATATCCAGCTCATGAAAACTATTATAAATGTGGTTGCACTCTTCAATTTGTTATCAACAGCATCTGCTGCTCTTGACAACTTTAAATTCTCCCAATCATTTTTGAATGTAGCTGCTACTTTTTTCAACTTTTGCGTCCTCACGTAAGGCTTCAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAATATTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGTGCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGTAGATATAGTGAAAACTATAATAATTATTATTTGAATTTCAGATGAGAATTTTAAATCCAGTATCTCCTTTTCCCGAAGCACTAAACGAAAAACCGTGCCAAATGGCGGCCAAAGAGACGGATGAATATTTCACACAGCTTCGGAAACAGTGGCTCTAGAATCTGGATATTGAATTTTCTAAAACTAATTTATTTTGACACTTATTGCTTTGTATTATTTATATGCATTTAAAATTCGGTTCCTGCAATTTCGGTTCCTGCAAAAGATAACTAGAAGTGATCAACTGATAAAATATTTTTGAAGTTATGATAAACATTTTGTCAGTTGACCACTTTTCTCATCTTCGACAGGAACCGAGATATATGAGCTCATAGTTGACTGTTTGGGTGGCTATCTATCAGAGTTATACGGTATTCTTGAACTTTCAATTCTAGGAAGTCCAGAATT</canonical>
            <polymorphic>TCAGTGTAAGTCTTTTGAAACTTAAAGTCTCTCTAAATCATTTTTTTTCCAGCCGAATCTACATTAGTCTATCATATAATCGTTCTTGTCATCAATGGAATATCTTCTGTTGTCCTGGCAGTTATCGAAAAGTACAATTATACAAGACTTCATGAAAGTTCGAATTTACGGAAAAGCAAGAAAGAATATTCGTTAGCAGAGCGATTTCAGATTTCAGAAAACATACGGGTCTGTGAGGTATAATTTCTTTCTTTTGTAAAAAAATCTACAATGTGAATATCCAGCTCATGAAAACTATTATAAATGTGGTTGCACTCTTCAATTTGTTATCAACAGCATCTGCTGCTCTTGACAACTTTAAATTCTCCCAATCATTTTTGAATGTAGCTGCTACTTTTTTCAACTTTTGCGTCCTCACGTAAGGCTTCAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAATATTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTYTATTATTTGGTGCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGTAGATATAGTGAAAACTATAATAATTATTATTTGAATTTCAGATGAGAATTTTAAATCCAGTATCTCCTTTTCCCGAAGCACTAAACGAAAAACCGTGCCAAATGGCGGCCAAAGAGACGGATGAATATTTCACACAGCTTCGGAAACAGTGGCTCTAGAATCTGGATATTGAATTTTCTAAAACTAATTTATTTTGACACTTATTGCTTTGTATTATTTATATGCATTTAAAATTCGGTTCCTGCAATTTCGGTTCCTGCAAAAGATAACTAGAAGTGATCAACTGATAAAATATTTTTGAAGTTATGATAAACATTTTGTCAGTTGACCACTTTTCTCATCTTCGACAGGAACCGAGATATATGAGCTCATAGTTGACTGTTTGGGTGGCTATCTATCAGAGTTATACGGTATTCTTGAACTTTCAATTCTAGGAAGTCCAGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAATCATTTTTGAATGTAGC</pcr_primer_p1>
		<pcr_primer_p2>GGAAAAGGAGATACTGGATTTA</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>CCAATCATTTTTGAATGTAGCTGCTACTTTTTTCAACTTTTGCGTCCTCACGTAAGGCTTCAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAATATTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGTGCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGTAGATATAGTGAAAACTATAATAATTATTATTTGAATTTCAGATGAGAATTTTAAATCCAGTATCTCCTTTTCC</canonical_amplicon>
		<polymorphic_amplicon>CCAATCATTTTTGAATGTAGCTGCTACTTTTTTCAACTTTTGCGTCCTCACGTAAGGCTTCAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAATATTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTYTATTATTTGGTGCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGTAGATATAGTGAAAACTATAATAATTATTATTTGAATTTCAGATGAGAATTTTAAATCCAGTATCTCCTTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4205</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>275803</contig_pos>
        <strand>+</strand>
        <context>TATAAAAATM[G/T]TTTTCCAGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCACGTAAGGCTTCAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAATA</left_flank>
        <right_flank>TTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGTGCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCTGGAAGTAGTGCTCTACTTTCCTATCTCTATCATCAGTGTAAGTCTTTTGAAACTTAAAGTCTCTCTAAATCATTTTTTTTCCAGCCGAATCTACATTAGTCTATCATATAATCGTTCTTGTCATCAATGGAATATCTTCTGTTGTCCTGGCAGTTATCGAAAAGTACAATTATACAAGACTTCATGAAAGTTCGAATTTACGGAAAAGCAAGAAAGAATATTCGTTAGCAGAGCGATTTCAGATTTCAGAAAACATACGGGTCTGTGAGGTATAATTTCTTTCTTTTGTAAAAAAATCTACAATGTGAATATCCAGCTCATGAAAACTATTATAAATGTGGTTGCACTCTTCAATTTGTTATCAACAGCATCTGCTGCTCTTGACAACTTTAAATTCTCCCAATCATTTTTGAATGTAGCTGCTACTTTTTTCAACTTTTGCGTCCTCACGTAAGGCTTCAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAATATTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGTGCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGTAGATATAGTGAAAACTATAATAATTATTATTTGAATTTCAGATGAGAATTTTAAATCCAGTATCTCCTTTTCCCGAAGCACTAAACGAAAAACCGTGCCAAATGGCGGCCAAAGAGACGGATGAATATTTCACACAGCTTCGGAAACAGTGGCTCTAGAATCTGGATATTGAATTTTCTAAAACTAATTTATTTTGACACTTATTGCTTTGTATTATTTATATGCATTTAAAATTCGGTTCCTGCAATTTCGGTTCCTGCAAAAGATAACTAGAAGTGATCAACTGATAAAATATTTTTGAAGTTATGATAAACATTTTGTCAGTTGACCACTTTTCTCATCTTCGACAGGAACCGAGATATATGAGCTCATAGTTGACTGTTTGGGTGGCTATCTATCAGAGTTATACGG</canonical>
            <polymorphic>TGCTGGAAGTAGTGCTCTACTTTCCTATCTCTATCATCAGTGTAAGTCTTTTGAAACTTAAAGTCTCTCTAAATCATTTTTTTTCCAGCCGAATCTACATTAGTCTATCATATAATCGTTCTTGTCATCAATGGAATATCTTCTGTTGTCCTGGCAGTTATCGAAAAGTACAATTATACAAGACTTCATGAAAGTTCGAATTTACGGAAAAGCAAGAAAGAATATTCGTTAGCAGAGCGATTTCAGATTTCAGAAAACATACGGGTCTGTGAGGTATAATTTCTTTCTTTTGTAAAAAAATCTACAATGTGAATATCCAGCTCATGAAAACTATTATAAATGTGGTTGCACTCTTCAATTTGTTATCAACAGCATCTGCTGCTCTTGACAACTTTAAATTCTCCCAATCATTTTTGAATGTAGCTGCTACTTTTTTCAACTTTTGCGTCCTCACGTAAGGCTTCAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAATAKTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGTGCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGTAGATATAGTGAAAACTATAATAATTATTATTTGAATTTCAGATGAGAATTTTAAATCCAGTATCTCCTTTTCCCGAAGCACTAAACGAAAAACCGTGCCAAATGGCGGCCAAAGAGACGGATGAATATTTCACACAGCTTCGGAAACAGTGGCTCTAGAATCTGGATATTGAATTTTCTAAAACTAATTTATTTTGACACTTATTGCTTTGTATTATTTATATGCATTTAAAATTCGGTTCCTGCAATTTCGGTTCCTGCAAAAGATAACTAGAAGTGATCAACTGATAAAATATTTTTGAAGTTATGATAAACATTTTGTCAGTTGACCACTTTTCTCATCTTCGACAGGAACCGAGATATATGAGCTCATAGTTGACTGTTTGGGTGGCTATCTATCAGAGTTATACGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>275 223 217 167 118</canonical_bands>
                <polymorphic_bands>492 223 167 118</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGCACTCTTCAATTTGTTATC</pcr_primer_p1>
		<pcr_primer_p2>ACCTTTGTAAAAGTTGATTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GTTGCACTCTTCAATTTGTTATCAACAGCATCTGCTGCTCTTGACAACTTTAAATTCTCCCAATCATTTTTGAATGTAGCTGCTACTTTTTTCAACTTTTGCGTCCTCACGTAAGGCTTCAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAATATTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGTGCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGT</canonical_amplicon>
		<polymorphic_amplicon>GTTGCACTCTTCAATTTGTTATCAACAGCATCTGCTGCTCTTGACAACTTTAAATTCTCCCAATCATTTTTGAATGTAGCTGCTACTTTTTTCAACTTTTGCGTCCTCACGTAAGGCTTCAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAATAKTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGTGCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4206</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>275802</contig_pos>
        <strand>+</strand>
        <context>GTATAAAAAT[A/C]KTTTTCCAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCTCACGTAAGGCTTCAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAAT</left_flank>
        <right_flank>TTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGTGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGCTGGAAGTAGTGCTCTACTTTCCTATCTCTATCATCAGTGTAAGTCTTTTGAAACTTAAAGTCTCTCTAAATCATTTTTTTTCCAGCCGAATCTACATTAGTCTATCATATAATCGTTCTTGTCATCAATGGAATATCTTCTGTTGTCCTGGCAGTTATCGAAAAGTACAATTATACAAGACTTCATGAAAGTTCGAATTTACGGAAAAGCAAGAAAGAATATTCGTTAGCAGAGCGATTTCAGATTTCAGAAAACATACGGGTCTGTGAGGTATAATTTCTTTCTTTTGTAAAAAAATCTACAATGTGAATATCCAGCTCATGAAAACTATTATAAATGTGGTTGCACTCTTCAATTTGTTATCAACAGCATCTGCTGCTCTTGACAACTTTAAATTCTCCCAATCATTTTTGAATGTAGCTGCTACTTTTTTCAACTTTTGCGTCCTCACGTAAGGCTTCAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAATATTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGTGCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGTAGATATAGTGAAAACTATAATAATTATTATTTGAATTTCAGATGAGAATTTTAAATCCAGTATCTCCTTTTCCCGAAGCACTAAACGAAAAACCGTGCCAAATGGCGGCCAAAGAGACGGATGAATATTTCACACAGCTTCGGAAACAGTGGCTCTAGAATCTGGATATTGAATTTTCTAAAACTAATTTATTTTGACACTTATTGCTTTGTATTATTTATATGCATTTAAAATTCGGTTCCTGCAATTTCGGTTCCTGCAAAAGATAACTAGAAGTGATCAACTGATAAAATATTTTTGAAGTTATGATAAACATTTTGTCAGTTGACCACTTTTCTCATCTTCGACAGGAACCGAGATATATGAGCTCATAGTTGACTGTTTGGGTGGCTATCTATCAGAGTTATACG</canonical>
            <polymorphic>CTGCTGGAAGTAGTGCTCTACTTTCCTATCTCTATCATCAGTGTAAGTCTTTTGAAACTTAAAGTCTCTCTAAATCATTTTTTTTCCAGCCGAATCTACATTAGTCTATCATATAATCGTTCTTGTCATCAATGGAATATCTTCTGTTGTCCTGGCAGTTATCGAAAAGTACAATTATACAAGACTTCATGAAAGTTCGAATTTACGGAAAAGCAAGAAAGAATATTCGTTAGCAGAGCGATTTCAGATTTCAGAAAACATACGGGTCTGTGAGGTATAATTTCTTTCTTTTGTAAAAAAATCTACAATGTGAATATCCAGCTCATGAAAACTATTATAAATGTGGTTGCACTCTTCAATTTGTTATCAACAGCATCTGCTGCTCTTGACAACTTTAAATTCTCCCAATCATTTTTGAATGTAGCTGCTACTTTTTTCAACTTTTGCGTCCTCACGTAAGGCTTCAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAATMTTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGTGCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGTAGATATAGTGAAAACTATAATAATTATTATTTGAATTTCAGATGAGAATTTTAAATCCAGTATCTCCTTTTCCCGAAGCACTAAACGAAAAACCGTGCCAAATGGCGGCCAAAGAGACGGATGAATATTTCACACAGCTTCGGAAACAGTGGCTCTAGAATCTGGATATTGAATTTTCTAAAACTAATTTATTTTGACACTTATTGCTTTGTATTATTTATATGCATTTAAAATTCGGTTCCTGCAATTTCGGTTCCTGCAAAAGATAACTAGAAGTGATCAACTGATAAAATATTTTTGAAGTTATGATAAACATTTTGTCAGTTGACCACTTTTCTCATCTTCGACAGGAACCGAGATATATGAGCTCATAGTTGACTGTTTGGGTGGCTATCTATCAGAGTTATACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>275 224 217 167 117</canonical_bands>
                <polymorphic_bands>492 224 167 117</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGCACTCTTCAATTTGTTATC</pcr_primer_p1>
		<pcr_primer_p2>ACCTTTGTAAAAGTTGATTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GTTGCACTCTTCAATTTGTTATCAACAGCATCTGCTGCTCTTGACAACTTTAAATTCTCCCAATCATTTTTGAATGTAGCTGCTACTTTTTTCAACTTTTGCGTCCTCACGTAAGGCTTCAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAATATTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGTGCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGT</canonical_amplicon>
		<polymorphic_amplicon>GTTGCACTCTTCAATTTGTTATCAACAGCATCTGCTGCTCTTGACAACTTTAAATTCTCCCAATCATTTTTGAATGTAGCTGCTACTTTTTTCAACTTTTGCGTCCTCACGTAAGGCTTCAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAATMTTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGTGCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4207</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>275766</contig_pos>
        <strand>+</strand>
        <context>ACGTAAGGCT[C/T]CAAAAGTCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGAATGTAGCTGCTACTTTTTTCAACTTTTGCGTCCTCACGTAAGGCT</left_flank>
        <right_flank>CAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAATATTTTTCCAGATATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCGTCATTATATCAGTATACTTTTACTAACAACTTCTGCTGGAAGTAGTGCTCTACTTTCCTATCTCTATCATCAGTGTAAGTCTTTTGAAACTTAAAGTCTCTCTAAATCATTTTTTTTCCAGCCGAATCTACATTAGTCTATCATATAATCGTTCTTGTCATCAATGGAATATCTTCTGTTGTCCTGGCAGTTATCGAAAAGTACAATTATACAAGACTTCATGAAAGTTCGAATTTACGGAAAAGCAAGAAAGAATATTCGTTAGCAGAGCGATTTCAGATTTCAGAAAACATACGGGTCTGTGAGGTATAATTTCTTTCTTTTGTAAAAAAATCTACAATGTGAATATCCAGCTCATGAAAACTATTATAAATGTGGTTGCACTCTTCAATTTGTTATCAACAGCATCTGCTGCTCTTGACAACTTTAAATTCTCCCAATCATTTTTGAATGTAGCTGCTACTTTTTTCAACTTTTGCGTCCTCACGTAAGGCTTCAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAATATTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGTGCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGTAGATATAGTGAAAACTATAATAATTATTATTTGAATTTCAGATGAGAATTTTAAATCCAGTATCTCCTTTTCCCGAAGCACTAAACGAAAAACCGTGCCAAATGGCGGCCAAAGAGACGGATGAATATTTCACACAGCTTCGGAAACAGTGGCTCTAGAATCTGGATATTGAATTTTCTAAAACTAATTTATTTTGACACTTATTGCTTTGTATTATTTATATGCATTTAAAATTCGGTTCCTGCAATTTCGGTTCCTGCAAAAGATAACTAGAAGTGATCAACTGATAAAATATTTTTGAAGTTATGATAAACATTTTGTCAGTTGACCACTTTTCTCATCTTCGACAGGAACCGAGATATATGAGCTCATAG</canonical>
            <polymorphic>GTCGTCATTATATCAGTATACTTTTACTAACAACTTCTGCTGGAAGTAGTGCTCTACTTTCCTATCTCTATCATCAGTGTAAGTCTTTTGAAACTTAAAGTCTCTCTAAATCATTTTTTTTCCAGCCGAATCTACATTAGTCTATCATATAATCGTTCTTGTCATCAATGGAATATCTTCTGTTGTCCTGGCAGTTATCGAAAAGTACAATTATACAAGACTTCATGAAAGTTCGAATTTACGGAAAAGCAAGAAAGAATATTCGTTAGCAGAGCGATTTCAGATTTCAGAAAACATACGGGTCTGTGAGGTATAATTTCTTTCTTTTGTAAAAAAATCTACAATGTGAATATCCAGCTCATGAAAACTATTATAAATGTGGTTGCACTCTTCAATTTGTTATCAACAGCATCTGCTGCTCTTGACAACTTTAAATTCTCCCAATCATTTTTGAATGTAGCTGCTACTTTTTTCAACTTTTGCGTCCTCACGTAAGGCTYCAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAATATTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGTGCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGTAGATATAGTGAAAACTATAATAATTATTATTTGAATTTCAGATGAGAATTTTAAATCCAGTATCTCCTTTTCCCGAAGCACTAAACGAAAAACCGTGCCAAATGGCGGCCAAAGAGACGGATGAATATTTCACACAGCTTCGGAAACAGTGGCTCTAGAATCTGGATATTGAATTTTCTAAAACTAATTTATTTTGACACTTATTGCTTTGTATTATTTATATGCATTTAAAATTCGGTTCCTGCAATTTCGGTTCCTGCAAAAGATAACTAGAAGTGATCAACTGATAAAATATTTTTGAAGTTATGATAAACATTTTGTCAGTTGACCACTTTTCTCATCTTCGACAGGAACCGAGATATATGAGCTCATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGCACTCTTCAATTTGTTATC</pcr_primer_p1>
		<pcr_primer_p2>ACCTTTGTAAAAGTTGATTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GTTGCACTCTTCAATTTGTTATCAACAGCATCTGCTGCTCTTGACAACTTTAAATTCTCCCAATCATTTTTGAATGTAGCTGCTACTTTTTTCAACTTTTGCGTCCTCACGTAAGGCTTCAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAATATTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGTGCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGT</canonical_amplicon>
		<polymorphic_amplicon>GTTGCACTCTTCAATTTGTTATCAACAGCATCTGCTGCTCTTGACAACTTTAAATTCTCCCAATCATTTTTGAATGTAGCTGCTACTTTTTTCAACTTTTGCGTCCTCACGTAAGGCTYCAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAATATTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGTGCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4208</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>275626</contig_pos>
        <strand>+</strand>
        <context>ATATCCAGCT[C/T]ATGAAAACTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTATAATTTCTTTCTTTTGTAAAAAAATCTACAATGTGAATATCCAGCT</left_flank>
        <right_flank>ATGAAAACTATTATAAATGTGGTTGCACTCTTCAATTTGTTATCAACAGC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATACCGGCCCTTTTAACACAGTTTTTACGGTAGGTGGTAGACTTCTTAACCCCATTATTTTCAGTTTCCTTCTCTCTTCCTGGATTTGTAATTGAACGATGCTGTGCTTCATACTTTCTTTCGGATTATGAGAAACGAAGTCGTCATTATATCAGTATACTTTTACTAACAACTTCTGCTGGAAGTAGTGCTCTACTTTCCTATCTCTATCATCAGTGTAAGTCTTTTGAAACTTAAAGTCTCTCTAAATCATTTTTTTTCCAGCCGAATCTACATTAGTCTATCATATAATCGTTCTTGTCATCAATGGAATATCTTCTGTTGTCCTGGCAGTTATCGAAAAGTACAATTATACAAGACTTCATGAAAGTTCGAATTTACGGAAAAGCAAGAAAGAATATTCGTTAGCAGAGCGATTTCAGATTTCAGAAAACATACGGGTCTGTGAGGTATAATTTCTTTCTTTTGTAAAAAAATCTACAATGTGAATATCCAGCTCATGAAAACTATTATAAATGTGGTTGCACTCTTCAATTTGTTATCAACAGCATCTGCTGCTCTTGACAACTTTAAATTCTCCCAATCATTTTTGAATGTAGCTGCTACTTTTTTCAACTTTTGCGTCCTCACGTAAGGCTTCAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAATATTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGTGCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGTAGATATAGTGAAAACTATAATAATTATTATTTGAATTTCAGATGAGAATTTTAAATCCAGTATCTCCTTTTCCCGAAGCACTAAACGAAAAACCGTGCCAAATGGCGGCCAAAGAGACGGATGAATATTTCACACAGCTTCGGAAACAGTGGCTCTAGAATCTGGATATTGAATTTTCTAAAACTAATTTATTTTGACACTTATTGCTTTGTATTATTTATATGCATTTAAAAT</canonical>
            <polymorphic>AATACCGGCCCTTTTAACACAGTTTTTACGGTAGGTGGTAGACTTCTTAACCCCATTATTTTCAGTTTCCTTCTCTCTTCCTGGATTTGTAATTGAACGATGCTGTGCTTCATACTTTCTTTCGGATTATGAGAAACGAAGTCGTCATTATATCAGTATACTTTTACTAACAACTTCTGCTGGAAGTAGTGCTCTACTTTCCTATCTCTATCATCAGTGTAAGTCTTTTGAAACTTAAAGTCTCTCTAAATCATTTTTTTTCCAGCCGAATCTACATTAGTCTATCATATAATCGTTCTTGTCATCAATGGAATATCTTCTGTTGTCCTGGCAGTTATCGAAAAGTACAATTATACAAGACTTCATGAAAGTTCGAATTTACGGAAAAGCAAGAAAGAATATTCGTTAGCAGAGCGATTTCAGATTTCAGAAAACATACGGGTCTGTGAGGTATAATTTCTTTCTTTTGTAAAAAAATCTACAATGTGAATATCCAGCTYATGAAAACTATTATAAATGTGGTTGCACTCTTCAATTTGTTATCAACAGCATCTGCTGCTCTTGACAACTTTAAATTCTCCCAATCATTTTTGAATGTAGCTGCTACTTTTTTCAACTTTTGCGTCCTCACGTAAGGCTTCAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAATATTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGTGCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGTAGATATAGTGAAAACTATAATAATTATTATTTGAATTTCAGATGAGAATTTTAAATCCAGTATCTCCTTTTCCCGAAGCACTAAACGAAAAACCGTGCCAAATGGCGGCCAAAGAGACGGATGAATATTTCACACAGCTTCGGAAACAGTGGCTCTAGAATCTGGATATTGAATTTTCTAAAACTAATTTATTTTGACACTTATTGCTTTGTATTATTTATATGCATTTAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 363 136</canonical_bands>
                <polymorphic_bands>637 363</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 364 136</canonical_bands>
                <polymorphic_bands>636 364</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>364 156 136 121 83 72 61 7</canonical_bands>
                <polymorphic_bands>364 197 156 121 83 72 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGGAATATCTTCTGTTGTCCT</pcr_primer_p1>
		<pcr_primer_p2>GATGCTGTTGATAACAAATTGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATGGAATATCTTCTGTTGTCCTGGCAGTTATCGAAAAGTACAATTATACAAGACTTCATGAAAGTTCGAATTTACGGAAAAGCAAGAAAGAATATTCGTTAGCAGAGCGATTTCAGATTTCAGAAAACATACGGGTCTGTGAGGTATAATTTCTTTCTTTTGTAAAAAAATCTACAATGTGAATATCCAGCTCATGAAAACTATTATAAATGTGGTTGCACTCTTCAATTTGTTATCAACAGCATC</canonical_amplicon>
		<polymorphic_amplicon>AATGGAATATCTTCTGTTGTCCTGGCAGTTATCGAAAAGTACAATTATACAAGACTTCATGAAAGTTCGAATTTACGGAAAAGCAAGAAAGAATATTCGTTAGCAGAGCGATTTCAGATTTCAGAAAACATACGGGTCTGTGAGGTATAATTTCTTTCTTTTGTAAAAAAATCTACAATGTGAATATCCAGCTYATGAAAACTATTATAAATGTGGTTGCACTCTTCAATTTGTTATCAACAGCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4209</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>275521</contig_pos>
        <strand>+</strand>
        <context>AAAAGCAAGA[A/G]AGAATATTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTACAATTATACAAGACTTCATGAAAGTTCGAATTTACGGAAAAGCAAGA</left_flank>
        <right_flank>AGAATATTCGTTAGCAGAGCGATTTCAGATTTCAGAAAACATACGGGTCT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAATTTTTGTACGTTTTAGTGAAAAATATTCCGGAATTTTCACAGAAATTTGTTGAAAACCCCTTATTGCTCAAAAACTTGCTCAATTTTTGTGAAACCTATGAATACCGGCCCTTTTAACACAGTTTTTACGGTAGGTGGTAGACTTCTTAACCCCATTATTTTCAGTTTCCTTCTCTCTTCCTGGATTTGTAATTGAACGATGCTGTGCTTCATACTTTCTTTCGGATTATGAGAAACGAAGTCGTCATTATATCAGTATACTTTTACTAACAACTTCTGCTGGAAGTAGTGCTCTACTTTCCTATCTCTATCATCAGTGTAAGTCTTTTGAAACTTAAAGTCTCTCTAAATCATTTTTTTTCCAGCCGAATCTACATTAGTCTATCATATAATCGTTCTTGTCATCAATGGAATATCTTCTGTTGTCCTGGCAGTTATCGAAAAGTACAATTATACAAGACTTCATGAAAGTTCGAATTTACGGAAAAGCAAGAAAGAATATTCGTTAGCAGAGCGATTTCAGATTTCAGAAAACATACGGGTCTGTGAGGTATAATTTCTTTCTTTTGTAAAAAAATCTACAATGTGAATATCCAGCTCATGAAAACTATTATAAATGTGGTTGCACTCTTCAATTTGTTATCAACAGCATCTGCTGCTCTTGACAACTTTAAATTCTCCCAATCATTTTTGAATGTAGCTGCTACTTTTTTCAACTTTTGCGTCCTCACGTAAGGCTTCAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAATATTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGTGCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGTAGATATAGTGAAAACTATAATAATTATTATTTGAATTTCAGATGAGAATTTTAAATCCAGTATCTCCTTTTCCCGAAGCACTAAACGAAAAACCGTGCCAAATGGCGGCCAAAGAGACGGATGAATATT</canonical>
            <polymorphic>AAGAATTTTTGTACGTTTTAGTGAAAAATATTCCGGAATTTTCACAGAAATTTGTTGAAAACCCCTTATTGCTCAAAAACTTGCTCAATTTTTGTGAAACCTATGAATACCGGCCCTTTTAACACAGTTTTTACGGTAGGTGGTAGACTTCTTAACCCCATTATTTTCAGTTTCCTTCTCTCTTCCTGGATTTGTAATTGAACGATGCTGTGCTTCATACTTTCTTTCGGATTATGAGAAACGAAGTCGTCATTATATCAGTATACTTTTACTAACAACTTCTGCTGGAAGTAGTGCTCTACTTTCCTATCTCTATCATCAGTGTAAGTCTTTTGAAACTTAAAGTCTCTCTAAATCATTTTTTTTCCAGCCGAATCTACATTAGTCTATCATATAATCGTTCTTGTCATCAATGGAATATCTTCTGTTGTCCTGGCAGTTATCGAAAAGTACAATTATACAAGACTTCATGAAAGTTCGAATTTACGGAAAAGCAAGARAGAATATTCGTTAGCAGAGCGATTTCAGATTTCAGAAAACATACGGGTCTGTGAGGTATAATTTCTTTCTTTTGTAAAAAAATCTACAATGTGAATATCCAGCTCATGAAAACTATTATAAATGTGGTTGCACTCTTCAATTTGTTATCAACAGCATCTGCTGCTCTTGACAACTTTAAATTCTCCCAATCATTTTTGAATGTAGCTGCTACTTTTTTCAACTTTTGCGTCCTCACGTAAGGCTTCAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAATATTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGTGCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGTAGATATAGTGAAAACTATAATAATTATTATTTGAATTTCAGATGAGAATTTTAAATCCAGTATCTCCTTTTCCCGAAGCACTAAACGAAAAACCGTGCCAAATGGCGGCCAAAGAGACGGATGAATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTGTCATCAATGGAATATCT</pcr_primer_p1>
		<pcr_primer_p2>GTTGATAACAAATTGAAGAGTGC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTCTTGTCATCAATGGAATATCTTCTGTTGTCCTGGCAGTTATCGAAAAGTACAATTATACAAGACTTCATGAAAGTTCGAATTTACGGAAAAGCAAGAAAGAATATTCGTTAGCAGAGCGATTTCAGATTTCAGAAAACATACGGGTCTGTGAGGTATAATTTCTTTCTTTTGTAAAAAAATCTACAATGTGAATATCCAGCTCATGAAAACTATTATAAATGTGGTTGCACTCTTCAATTTGTTATCAAC</canonical_amplicon>
		<polymorphic_amplicon>TTCTTGTCATCAATGGAATATCTTCTGTTGTCCTGGCAGTTATCGAAAAGTACAATTATACAAGACTTCATGAAAGTTCGAATTTACGGAAAAGCAAGARAGAATATTCGTTAGCAGAGCGATTTCAGATTTCAGAAAACATACGGGTCTGTGAGGTATAATTTCTTTCTTTTGTAAAAAAATCTACAATGTGAATATCCAGCTCATGAAAACTATTATAAATGTGGTTGCACTCTTCAATTTGTTATCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4210</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>282168</contig_pos>
        <strand>+</strand>
        <context>ATGTTTCGTT[A/T]CCCAACCAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAACTACACTTTTTTATTTCATAATCATGCGCAACTACAATGTTTCGTT</left_flank>
        <right_flank>CCCAACCAATTTCTCCATCTCTCTCTCCCTCTCTTTAATTTCTTTCCGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGCGGAGGTGCAATGGGCTTTTTGATATGTCTGCGACTCCGTGCTCTATGTGCCTGATGTTTCTTCGGACGGATGAGCCAACATGTGCTCTCGCGCATAGTTTAGTTATACGCTCGTTGGCACGTAGTTCATGATTTCAGATGATTCAGAGTCATATAAATTCCCGTAGCGTTCTGGAGACATAGTTAAATAGTTTATGCAGATCGAGAAAAGAATACTGTCACCTGCGTATTTGCAGATTCTGTGCAAATCACCGTAATTTCTTCTTTGTCCGCAAACACGCGGTGGCAGTTTTAATTACGAAAAGTTTTTCGCGAAAATACGCTGATGGCGTTTCATCTTTTCATTAAACATGCTAAAAAATTAAACCTGTTGATCATAAAAACTCTCTCCTTTCTTATTCTAATCCCGATATGCGAAAAACACAAAGTATATGAATAGTGGCTACAAAACTACACTTTTTTATTTCATAATCATGCGCAACTACAATGTTTCGTTACCCAACCAATTTCTCCATCTCTCTCTCCCTCTCTTTAATTTCTTTCCGTTGCGCTTGTTTTCAAAAAAAATGCAATATTTCTTCTCTCCTGCTTTGAGCTAGAAATCGAGTTTATTAGTCATCATTCCTGATCTTTGTTGTCAGAGTTCTACCCATTATTTATAACACTATCTTAGTAACTCGTTGACTCATTTTCTCATAATCATCACTGTTTCGCATGATTTTAGTTTTTTTTTCCAGAAAAATGGACACATTGACACAGTTGAGAAATCAGGCGGATAGCTGGTCAACTTCTGAAGTCAGATCAGTCACACATGGGTTAGTTAATTACTGATTTTTAAAAGACCTTGTTCATTTTCCATAATTTTCAGTCACCTATGGACAATTCGTGGTTTCTCTCAACTTGATTGCAGGTATCTGGAGACAAGTGCAAAGATAAAAGATATGGCTGTAAGTTTAAAAAAAAAATTCCATTCTAAATGCTCCACATACCTTTTTGT</canonical>
            <polymorphic>GCGCGGAGGTGCAATGGGCTTTTTGATATGTCTGCGACTCCGTGCTCTATGTGCCTGATGTTTCTTCGGACGGATGAGCCAACATGTGCTCTCGCGCATAGTTTAGTTATACGCTCGTTGGCACGTAGTTCATGATTTCAGATGATTCAGAGTCATATAAATTCCCGTAGCGTTCTGGAGACATAGTTAAATAGTTTATGCAGATCGAGAAAAGAATACTGTCACCTGCGTATTTGCAGATTCTGTGCAAATCACCGTAATTTCTTCTTTGTCCGCAAACACGCGGTGGCAGTTTTAATTACGAAAAGTTTTTCGCGAAAATACGCTGATGGCGTTTCATCTTTTCATTAAACATGCTAAAAAATTAAACCTGTTGATCATAAAAACTCTCTCCTTTCTTATTCTAATCCCGATATGCGAAAAACACAAAGTATATGAATAGTGGCTACAAAACTACACTTTTTTATTTCATAATCATGCGCAACTACAATGTTTCGTTWCCCAACCAATTTCTCCATCTCTCTCTCCCTCTCTTTAATTTCTTTCCGTTGCGCTTGTTTTCAAAAAAAATGCAATATTTCTTCTCTCCTGCTTTGAGCTAGAAATCGAGTTTATTAGTCATCATTCCTGATCTTTGTTGTCAGAGTTCTACCCATTATTTATAACACTATCTTAGTAACTCGTTGACTCATTTTCTCATAATCATCACTGTTTCGCATGATTTTAGTTTTTTTTTCCAGAAAAATGGACACATTGACACAGTTGAGAAATCAGGCGGATAGCTGGTCAACTTCTGAAGTCAGATCAGTCACACATGGGTTAGTTAATTACTGATTTTTAAAAGACCTTGTTCATTTTCCATAATTTTCAGTCACCTATGGACAATTCGTGGTTTCTCTCAACTTGATTGCAGGTATCTGGAGACAAGTGCAAAGATAAAAGATATGGCTGTAAGTTTAAAAAAAAAATTCCATTCTAAATGCTCCACATACCTTTTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>276 220 179 132 130 63</canonical_bands>
                <polymorphic_bands>455 220 132 130 63</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATATGCGAAAAACACAAAGTAT</pcr_primer_p1>
		<pcr_primer_p2>AAATAATGGGTAGAACTCTGACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATATGCGAAAAACACAAAGTATATGAATAGTGGCTACAAAACTACACTTTTTTATTTCATAATCATGCGCAACTACAATGTTTCGTTACCCAACCAATTTCTCCATCTCTCTCTCCCTCTCTTTAATTTCTTTCCGTTGCGCTTGTTTTCAAAAAAAATGCAATATTTCTTCTCTCCTGCTTTGAGCTAGAAATCGAGTTTATTAGTCATCATTCCTGATCTTTGTTGTCAGAGTTCTACCCATTATTT</canonical_amplicon>
		<polymorphic_amplicon>GATATGCGAAAAACACAAAGTATATGAATAGTGGCTACAAAACTACACTTTTTTATTTCATAATCATGCGCAACTACAATGTTTCGTTWCCCAACCAATTTCTCCATCTCTCTCTCCCTCTCTTTAATTTCTTTCCGTTGCGCTTGTTTTCAAAAAAAATGCAATATTTCTTCTCTCCTGCTTTGAGCTAGAAATCGAGTTTATTAGTCATCATTCCTGATCTTTGTTGTCAGAGTTCTACCCATTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4211</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>284574</contig_pos>
        <strand>+</strand>
        <context>CGTAATGAAW[C/T]ATTTATTGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCCCCCATTGCTTTTTCTCAGTATCATTTTATGAATGGCGTAATGAAT</left_flank>
        <right_flank>ATTTATTGTTCTCTTCTCTCTTAATTATAGTTGTGTGAATGTATCACCTA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTGCTGATATAATGCATTTTCCCCCTTATACCATGTCATGTTATTAAATCGTTTTCTTTCTCATGTTTATTTCTCCCAAATTTAACTTCTTCTCATGTTCTTCTGTTACAACTAACTTTGCATCTTAGCTTTTTTGAATCTCAGCGACTCCCTATCAAATACATTTTCTCAGTTGTGAGTCACGATGTTTCGACCTCCATTCTCCCCATCTCGCTGTATTATTTTCTTTTTTTTTCAACACGTCGTCCAAATTTTCGCCAGGACGTTTTGTGCAATTGTGTCCTCAGAAAATGTCCCAGCCTACGGTTACCAACTTGTGGAAGGTTAAAAATCTCTCCAATAGTTTTTTTTTTGAAAAATTAGTCTCTTTTTCTATTGTCTGTGCAATAACCTATTCATTTTAAAGAATACCCATCTTCCGATGCTTCCCAAAACCTCTCCCATTCGTTTTCCCCCATTGCTTTTTCTCAGTATCATTTTATGAATGGCGTAATGAATTATTTATTGTTCTCTTCTCTCTTAATTATAGTTGTGTGAATGTATCACCTAATTCAGCTTTTATGATAATCTGGAAAAAAACAGGTCGAATCGGAGGTGTCTCATGGAGGATGTCAATGTGAAACACAGACAAGATAGGATCACAACCTCAATAGAAGTTTGCGAGTCGGGATCTATCGCTTTTACTTAGAAGATCTCATCTATTTTCCGTATATGCAACTAAAACTTTGGGAAGCGTTTTCATTCCGTTTCATGGTTTCACATTTCAGAGTTTTAAAATTTTACTGTAAAACCTCTATTAGAAGGACCTCTGACTTATAACATAGAGCTGTTCTCTCCGTCCCTGTGGGAGATGTCAAAAAGTCGAGAACTTATAAATTCGCCTTTATTCTGGTTACGAAAAATCGGAGTTGTACATTTGTAATACGGAAATACGGAAAATAAAAATTATTTTAGGTTACTCTAGTTGTCGTTGCGGGCCGAAGGTCCCACAACGACCAC</canonical>
            <polymorphic>ACTGCTGATATAATGCATTTTCCCCCTTATACCATGTCATGTTATTAAATCGTTTTCTTTCTCATGTTTATTTCTCCCAAATTTAACTTCTTCTCATGTTCTTCTGTTACAACTAACTTTGCATCTTAGCTTTTTTGAATCTCAGCGACTCCCTATCAAATACATTTTCTCAGTTGTGAGTCACGATGTTTCGACCTCCATTCTCCCCATCTCGCTGTATTATTTTCTTTTTTTTTCAACACGTCGTCCAAATTTTCGCCAGGACGTTTTGTGCAATTGTGTCCTCAGAAAATGTCCCAGCCTACGGTTACCAACTTGTGGAAGGTTAAAAATCTCTCCAATAGTTTTTTTTTTGAAAAATTAGTCTCTTTTTCTATTGTCTGTGCAATAACCTATTCATTTTAAAGAATACCCATCTTCCGATGCTTCCCAAAACCTCTCCCATTCGTTTTCCCCCATTGCTTTTTCTCAGTATCATTTTATGAATGGCGTAATGAATYATTTATTGTTCTCTTCTCTCTTAATTATAGTTGTGTGAATGTATCACCTAATTCAGCTTTTATGATAATCTGGAAAAAAACAGGTCGAATCGGAGGTGTCTCATGGAGGATGTCAATGTGAAACACAGACAAGATAGGATCACAACCTCAATAGAAGTTTGCGAGTCGGGATCTATCGCTTTTACTTAGAAGATCTCATCTATTTTCCGTATATGCAACTAAAACTTTGGGAAGCGTTTTCATTCCGTTTCATGGTTTCACATTTCAGAGTTTTAAAATTTTACTGTAAAACCTCTATTAGAAGGACCTCTGACTTATAACATAGAGCTGTTCTCTCCGTCCCTGTGGGAGATGTCAAAAAGTCGAGAACTTATAAATTCGCCTTTATTCTGGTTACGAAAAATCGGAGTTGTACATTTGTAATACGGAAATACGGAAAATAAAAATTATTTTAGGTTACTCTAGTTGTCGTTGCGGGCCGAAGGTCCCACAACGACCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>227 171 138 99 84 79 69 56 27 26 24</canonical_bands>
                <polymorphic_bands>227 171 164 99 84 79 69 56 27 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTGCAATAACCTATTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>GTCTGTGTTTCACATTGACATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGTGCAATAACCTATTCATTTTAAAGAATACCCATCTTCCGATGCTTCCCAAAACCTCTCCCATTCGTTTTCCCCCATTGCTTTTTCTCAGTATCATTTTATGAATGGCGTAATGAATTATTTATTGTTCTCTTCTCTCTTAATTATAGTTGTGTGAATGTATCACCTAATTCAGCTTTTATGATAATCTGGAAAAAAACAGGTCGAATCGGAGGTGTCTCATGGAGGATGTCAATGTGAAACACAGAC</canonical_amplicon>
		<polymorphic_amplicon>CTGTGCAATAACCTATTCATTTTAAAGAATACCCATCTTCCGATGCTTCCCAAAACCTCTCCCATTCGTTTTCCCCCATTGCTTTTTCTCAGTATCATTTTATGAATGGCGTAATGAATYATTTATTGTTCTCTTCTCTCTTAATTATAGTTGTGTGAATGTATCACCTAATTCAGCTTTTATGATAATCTGGAAAAAAACAGGTCGAATCGGAGGTGTCTCATGGAGGATGTCAATGTGAAACACAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4212</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>284573</contig_pos>
        <strand>+</strand>
        <context>GCGTAATGAA[A/T]YATTTATTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTCCCCCATTGCTTTTTCTCAGTATCATTTTATGAATGGCGTAATGAA</left_flank>
        <right_flank>TATTTATTGTTCTCTTCTCTCTTAATTATAGTTGTGTGAATGTATCACCT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACTGCTGATATAATGCATTTTCCCCCTTATACCATGTCATGTTATTAAATCGTTTTCTTTCTCATGTTTATTTCTCCCAAATTTAACTTCTTCTCATGTTCTTCTGTTACAACTAACTTTGCATCTTAGCTTTTTTGAATCTCAGCGACTCCCTATCAAATACATTTTCTCAGTTGTGAGTCACGATGTTTCGACCTCCATTCTCCCCATCTCGCTGTATTATTTTCTTTTTTTTTCAACACGTCGTCCAAATTTTCGCCAGGACGTTTTGTGCAATTGTGTCCTCAGAAAATGTCCCAGCCTACGGTTACCAACTTGTGGAAGGTTAAAAATCTCTCCAATAGTTTTTTTTTTGAAAAATTAGTCTCTTTTTCTATTGTCTGTGCAATAACCTATTCATTTTAAAGAATACCCATCTTCCGATGCTTCCCAAAACCTCTCCCATTCGTTTTCCCCCATTGCTTTTTCTCAGTATCATTTTATGAATGGCGTAATGAATTATTTATTGTTCTCTTCTCTCTTAATTATAGTTGTGTGAATGTATCACCTAATTCAGCTTTTATGATAATCTGGAAAAAAACAGGTCGAATCGGAGGTGTCTCATGGAGGATGTCAATGTGAAACACAGACAAGATAGGATCACAACCTCAATAGAAGTTTGCGAGTCGGGATCTATCGCTTTTACTTAGAAGATCTCATCTATTTTCCGTATATGCAACTAAAACTTTGGGAAGCGTTTTCATTCCGTTTCATGGTTTCACATTTCAGAGTTTTAAAATTTTACTGTAAAACCTCTATTAGAAGGACCTCTGACTTATAACATAGAGCTGTTCTCTCCGTCCCTGTGGGAGATGTCAAAAAGTCGAGAACTTATAAATTCGCCTTTATTCTGGTTACGAAAAATCGGAGTTGTACATTTGTAATACGGAAATACGGAAAATAAAAATTATTTTAGGTTACTCTAGTTGTCGTTGCGGGCCGAAGGTCCCACAACGACCA</canonical>
            <polymorphic>CACTGCTGATATAATGCATTTTCCCCCTTATACCATGTCATGTTATTAAATCGTTTTCTTTCTCATGTTTATTTCTCCCAAATTTAACTTCTTCTCATGTTCTTCTGTTACAACTAACTTTGCATCTTAGCTTTTTTGAATCTCAGCGACTCCCTATCAAATACATTTTCTCAGTTGTGAGTCACGATGTTTCGACCTCCATTCTCCCCATCTCGCTGTATTATTTTCTTTTTTTTTCAACACGTCGTCCAAATTTTCGCCAGGACGTTTTGTGCAATTGTGTCCTCAGAAAATGTCCCAGCCTACGGTTACCAACTTGTGGAAGGTTAAAAATCTCTCCAATAGTTTTTTTTTTGAAAAATTAGTCTCTTTTTCTATTGTCTGTGCAATAACCTATTCATTTTAAAGAATACCCATCTTCCGATGCTTCCCAAAACCTCTCCCATTCGTTTTCCCCCATTGCTTTTTCTCAGTATCATTTTATGAATGGCGTAATGAAWTATTTATTGTTCTCTTCTCTCTTAATTATAGTTGTGTGAATGTATCACCTAATTCAGCTTTTATGATAATCTGGAAAAAAACAGGTCGAATCGGAGGTGTCTCATGGAGGATGTCAATGTGAAACACAGACAAGATAGGATCACAACCTCAATAGAAGTTTGCGAGTCGGGATCTATCGCTTTTACTTAGAAGATCTCATCTATTTTCCGTATATGCAACTAAAACTTTGGGAAGCGTTTTCATTCCGTTTCATGGTTTCACATTTCAGAGTTTTAAAATTTTACTGTAAAACCTCTATTAGAAGGACCTCTGACTTATAACATAGAGCTGTTCTCTCCGTCCCTGTGGGAGATGTCAAAAAGTCGAGAACTTATAAATTCGCCTTTATTCTGGTTACGAAAAATCGGAGTTGTACATTTGTAATACGGAAATACGGAAAATAAAAATTATTTTAGGTTACTCTAGTTGTCGTTGCGGGCCGAAGGTCCCACAACGACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>227 171 138 99 84 80 69 55 27 26 24</canonical_bands>
                <polymorphic_bands>227 171 164 99 84 80 69 55 27 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTGCAATAACCTATTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>GTCTGTGTTTCACATTGACATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGTGCAATAACCTATTCATTTTAAAGAATACCCATCTTCCGATGCTTCCCAAAACCTCTCCCATTCGTTTTCCCCCATTGCTTTTTCTCAGTATCATTTTATGAATGGCGTAATGAATTATTTATTGTTCTCTTCTCTCTTAATTATAGTTGTGTGAATGTATCACCTAATTCAGCTTTTATGATAATCTGGAAAAAAACAGGTCGAATCGGAGGTGTCTCATGGAGGATGTCAATGTGAAACACAGAC</canonical_amplicon>
		<polymorphic_amplicon>CTGTGCAATAACCTATTCATTTTAAAGAATACCCATCTTCCGATGCTTCCCAAAACCTCTCCCATTCGTTTTCCCCCATTGCTTTTTCTCAGTATCATTTTATGAATGGCGTAATGAAWTATTTATTGTTCTCTTCTCTCTTAATTATAGTTGTGTGAATGTATCACCTAATTCAGCTTTTATGATAATCTGGAAAAAAACAGGTCGAATCGGAGGTGTCTCATGGAGGATGTCAATGTGAAACACAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4213</snp_id>
        <super_contig>c002000444.Contig4</super_contig>
        <contig_pos>56011</contig_pos>
        <strand>+</strand>
        <context>GATGCATACC[A/G]CCTGAGGCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCATGAAGTCTCGCAAAATTTTAGTTTTTCAGTGTCATGATGCATACC</left_flank>
        <right_flank>CCTGAGGCCAAGAGACGCAATGTATGGAGGAAGAACTCAACAATTTTAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCGATTGGGATCCTCAATTGTATTTTCTTGATTTTTCTGAATATTCTATAAGACAGCTGTTCTTCATATTCTGCTGCTATCTAAAATTTAGTTAATGACGCATAATGGTGAATGGTAATTTGAAAACGATTTTCATCAGTAATCCTATCAGTAATATGACCGTGTATTCACACCAACCAAAGGCTTTCAACCTGGAGACGGAATCAGAAGGACATTTTCCTATTTGTTCAACCACCCTGATAATTATGGAAGAAGGGCCCCTAGTCTACCTTTTATCGAATATTATAAACCACAATTCCTGTCCGATATGAATTTAAAACATGAAACGAGGAGCACGAGGACACACCTTTCAATTTCAAGAAAACAATTTTCAAATACTGCAAGAATGATGTGCAAATCTTGGTGGAAGCAGTTGTCCAATTAAAAATCCTCAAAAATGTGAGTAAAAATTCATGAAGTCTCGCAAAATTTTAGTTTTTCAGTGTCATGATGCATACCGCCTGAGGCCAAGAGACGCAATGTATGGAGGAAGAACTCAACAATTTTAAAAGTTTTGTCAAGGCCTGCTCAGAAGGAGTTTCATGCTTATCAAAAACTGCTGCCATCACCGCGGACATATATCATATACATCCAACCTGGTTCGATAGAAGTGGAACACGATGACGAGAAGATCGATTGCAGATTAATGTCACTGAGATTGAAGAAGAAGGAGTTTCAACTTATGAAGAACGACAGTTGATATTCATTGCCGGAGACATTTATGCCGGAGTCAAGGACTCTTCGTTTCCAATGATGTTAGCTGTCTCCTTTGTAGCCAGTATACGTTCTCGGAGAACCATGATTGTCGACGGTGTAACAAGTTGGTTTACGAGTTGGTATTTCATCGCTATGGCTAGTATCGTCATCGTTGTGCTGATCATCGTTGGAGTAATTTTCGTCAAGTTTTACTTTGAAAGGAAAGTAGTTACCATTCTTCTCGGTATTAATTCGGCCATTACG</canonical>
            <polymorphic>CCCGATTGGGATCCTCAATTGTATTTTCTTGATTTTTCTGAATATTCTATAAGACAGCTGTTCTTCATATTCTGCTGCTATCTAAAATTTAGTTAATGACGCATAATGGTGAATGGTAATTTGAAAACGATTTTCATCAGTAATCCTATCAGTAATATGACCGTGTATTCACACCAACCAAAGGCTTTCAACCTGGAGACGGAATCAGAAGGACATTTTCCTATTTGTTCAACCACCCTGATAATTATGGAAGAAGGGCCCCTAGTCTACCTTTTATCGAATATTATAAACCACAATTCCTGTCCGATATGAATTTAAAACATGAAACGAGGAGCACGAGGACACACCTTTCAATTTCAAGAAAACAATTTTCAAATACTGCAAGAATGATGTGCAAATCTTGGTGGAAGCAGTTGTCCAATTAAAAATCCTCAAAAATGTGAGTAAAAATTCATGAAGTCTCGCAAAATTTTAGTTTTTCAGTGTCATGATGCATACCRCCTGAGGCCAAGAGACGCAATGTATGGAGGAAGAACTCAACAATTTTAAAAGTTTTGTCAAGGCCTGCTCAGAAGGAGTTTCATGCTTATCAAAAACTGCTGCCATCACCGCGGACATATATCATATACATCCAACCTGGTTCGATAGAAGTGGAACACGATGACGAGAAGATCGATTGCAGATTAATGTCACTGAGATTGAAGAAGAAGGAGTTTCAACTTATGAAGAACGACAGTTGATATTCATTGCCGGAGACATTTATGCCGGAGTCAAGGACTCTTCGTTTCCAATGATGTTAGCTGTCTCCTTTGTAGCCAGTATACGTTCTCGGAGAACCATGATTGTCGACGGTGTAACAAGTTGGTTTACGAGTTGGTATTTCATCGCTATGGCTAGTATCGTCATCGTTGTGCTGATCATCGTTGGAGTAATTTTCGTCAAGTTTTACTTTGAAAGGAAAGTAGTTACCATTCTTCTCGGTATTAATTCGGCCATTACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>498 391 111</canonical_bands>
                <polymorphic_bands>609 391</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCAATTAAAAATCCTCAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTCATCGTGTTCCACTTCTATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCAATTAAAAATCCTCAAAAATGTGAGTAAAAATTCATGAAGTCTCGCAAAATTTTAGTTTTTCAGTGTCATGATGCATACCGCCTGAGGCCAAGAGACGCAATGTATGGAGGAAGAACTCAACAATTTTAAAAGTTTTGTCAAGGCCTGCTCAGAAGGAGTTTCATGCTTATCAAAAACTGCTGCCATCACCGCGGACATATATCATATACATCCAACCTGGTTCGATAGAAGTGGAACACGATGAC</canonical_amplicon>
		<polymorphic_amplicon>TCCAATTAAAAATCCTCAAAAATGTGAGTAAAAATTCATGAAGTCTCGCAAAATTTTAGTTTTTCAGTGTCATGATGCATACCRCCTGAGGCCAAGAGACGCAATGTATGGAGGAAGAACTCAACAATTTTAAAAGTTTTGTCAAGGCCTGCTCAGAAGGAGTTTCATGCTTATCAAAAACTGCTGCCATCACCGCGGACATATATCATATACATCCAACCTGGTTCGATAGAAGTGGAACACGATGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4214</snp_id>
        <super_contig>c002000444.Contig4</super_contig>
        <contig_pos>56122</contig_pos>
        <strand>+</strand>
        <context>TGCCATCACC[A/G]CGGACATATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGCCTGCTCAGAAGGAGTTTCATGCTTATCAAAAACTGCTGCCATCACC</left_flank>
        <right_flank>CGGACATATATCATATACATCCAACCTGGTTCGATAGAAGTGGAACACGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGGTAATTTGAAAACGATTTTCATCAGTAATCCTATCAGTAATATGACCGTGTATTCACACCAACCAAAGGCTTTCAACCTGGAGACGGAATCAGAAGGACATTTTCCTATTTGTTCAACCACCCTGATAATTATGGAAGAAGGGCCCCTAGTCTACCTTTTATCGAATATTATAAACCACAATTCCTGTCCGATATGAATTTAAAACATGAAACGAGGAGCACGAGGACACACCTTTCAATTTCAAGAAAACAATTTTCAAATACTGCAAGAATGATGTGCAAATCTTGGTGGAAGCAGTTGTCCAATTAAAAATCCTCAAAAATGTGAGTAAAAATTCATGAAGTCTCGCAAAATTTTAGTTTTTCAGTGTCATGATGCATACCGCCTGAGGCCAAGAGACGCAATGTATGGAGGAAGAACTCAACAATTTTAAAAGTTTTGTCAAGGCCTGCTCAGAAGGAGTTTCATGCTTATCAAAAACTGCTGCCATCACCGCGGACATATATCATATACATCCAACCTGGTTCGATAGAAGTGGAACACGATGACGAGAAGATCGATTGCAGATTAATGTCACTGAGATTGAAGAAGAAGGAGTTTCAACTTATGAAGAACGACAGTTGATATTCATTGCCGGAGACATTTATGCCGGAGTCAAGGACTCTTCGTTTCCAATGATGTTAGCTGTCTCCTTTGTAGCCAGTATACGTTCTCGGAGAACCATGATTGTCGACGGTGTAACAAGTTGGTTTACGAGTTGGTATTTCATCGCTATGGCTAGTATCGTCATCGTTGTGCTGATCATCGTTGGAGTAATTTTCGTCAAGTTTTACTTTGAAAGGAAAGTAGTTACCATTCTTCTCGGTATTAATTCGGCCATTACGACATACATTTGTTTTAATGATTGTCCTAATAGAACATTTCTTCCCAAAAATTACCAATTTTGAATTGTATGACCCTCACCCCAACCCAACACCGTGTGAGCCTTAAGCGAC</canonical>
            <polymorphic>AATGGTAATTTGAAAACGATTTTCATCAGTAATCCTATCAGTAATATGACCGTGTATTCACACCAACCAAAGGCTTTCAACCTGGAGACGGAATCAGAAGGACATTTTCCTATTTGTTCAACCACCCTGATAATTATGGAAGAAGGGCCCCTAGTCTACCTTTTATCGAATATTATAAACCACAATTCCTGTCCGATATGAATTTAAAACATGAAACGAGGAGCACGAGGACACACCTTTCAATTTCAAGAAAACAATTTTCAAATACTGCAAGAATGATGTGCAAATCTTGGTGGAAGCAGTTGTCCAATTAAAAATCCTCAAAAATGTGAGTAAAAATTCATGAAGTCTCGCAAAATTTTAGTTTTTCAGTGTCATGATGCATACCGCCTGAGGCCAAGAGACGCAATGTATGGAGGAAGAACTCAACAATTTTAAAAGTTTTGTCAAGGCCTGCTCAGAAGGAGTTTCATGCTTATCAAAAACTGCTGCCATCACCRCGGACATATATCATATACATCCAACCTGGTTCGATAGAAGTGGAACACGATGACGAGAAGATCGATTGCAGATTAATGTCACTGAGATTGAAGAAGAAGGAGTTTCAACTTATGAAGAACGACAGTTGATATTCATTGCCGGAGACATTTATGCCGGAGTCAAGGACTCTTCGTTTCCAATGATGTTAGCTGTCTCCTTTGTAGCCAGTATACGTTCTCGGAGAACCATGATTGTCGACGGTGTAACAAGTTGGTTTACGAGTTGGTATTTCATCGCTATGGCTAGTATCGTCATCGTTGTGCTGATCATCGTTGGAGTAATTTTCGTCAAGTTTTACTTTGAAAGGAAAGTAGTTACCATTCTTCTCGGTATTAATTCGGCCATTACGACATACATTTGTTTTAATGATTGTCCTAATAGAACATTTCTTCCCAAAAATTACCAATTTTGAATTGTATGACCCTCACCCCAACCCAACACCGTGTGAGCCTTAAGCGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>502 387 111</canonical_bands>
                <polymorphic_bands>613 387</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGCGG</site>
                <isoschizomers>
                    <enzyme>Cfr42I</enzyme>
                    <enzyme>KspI</enzyme>
                    <enzyme>SacII</enzyme>
                    <enzyme>Sfr303I</enzyme>
                    <enzyme>SgrBI</enzyme>
                    <enzyme>SstII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAAAATTTTAGTTTTTCAGTGT</pcr_primer_p1>
		<pcr_primer_p2>ACTCCTTCTTCTTCAATCTCAGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCAAAATTTTAGTTTTTCAGTGTCATGATGCATACCGCCTGAGGCCAAGAGACGCAATGTATGGAGGAAGAACTCAACAATTTTAAAAGTTTTGTCAAGGCCTGCTCAGAAGGAGTTTCATGCTTATCAAAAACTGCTGCCATCACCGCGGACATATATCATATACATCCAACCTGGTTCGATAGAAGTGGAACACGATGACGAGAAGATCGATTGCAGATTAATGTCACTGAGATTGAAGAAGAAGGAGT</canonical_amplicon>
		<polymorphic_amplicon>GCAAAATTTTAGTTTTTCAGTGTCATGATGCATACCGCCTGAGGCCAAGAGACGCAATGTATGGAGGAAGAACTCAACAATTTTAAAAGTTTTGTCAAGGCCTGCTCAGAAGGAGTTTCATGCTTATCAAAAACTGCTGCCATCACCRCGGACATATATCATATACATCCAACCTGGTTCGATAGAAGTGGAACACGATGACGAGAAGATCGATTGCAGATTAATGTCACTGAGATTGAAGAAGAAGGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4215</snp_id>
        <super_contig>c002000444.Contig4</super_contig>
        <contig_pos>56182</contig_pos>
        <strand>+</strand>
        <context>ATGACGAGAA[A/G]ATCGATTGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCATATACATCCAACCTGGTTCGATAGAAGTGGAACACGATGACGAGAA</left_flank>
        <right_flank>ATCGATTGCAGATTAATGTCACTGAGATTGAAGAAGAAGGAGTTTCAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACCAACCAAAGGCTTTCAACCTGGAGACGGAATCAGAAGGACATTTTCCTATTTGTTCAACCACCCTGATAATTATGGAAGAAGGGCCCCTAGTCTACCTTTTATCGAATATTATAAACCACAATTCCTGTCCGATATGAATTTAAAACATGAAACGAGGAGCACGAGGACACACCTTTCAATTTCAAGAAAACAATTTTCAAATACTGCAAGAATGATGTGCAAATCTTGGTGGAAGCAGTTGTCCAATTAAAAATCCTCAAAAATGTGAGTAAAAATTCATGAAGTCTCGCAAAATTTTAGTTTTTCAGTGTCATGATGCATACCGCCTGAGGCCAAGAGACGCAATGTATGGAGGAAGAACTCAACAATTTTAAAAGTTTTGTCAAGGCCTGCTCAGAAGGAGTTTCATGCTTATCAAAAACTGCTGCCATCACCGCGGACATATATCATATACATCCAACCTGGTTCGATAGAAGTGGAACACGATGACGAGAAGATCGATTGCAGATTAATGTCACTGAGATTGAAGAAGAAGGAGTTTCAACTTATGAAGAACGACAGTTGATATTCATTGCCGGAGACATTTATGCCGGAGTCAAGGACTCTTCGTTTCCAATGATGTTAGCTGTCTCCTTTGTAGCCAGTATACGTTCTCGGAGAACCATGATTGTCGACGGTGTAACAAGTTGGTTTACGAGTTGGTATTTCATCGCTATGGCTAGTATCGTCATCGTTGTGCTGATCATCGTTGGAGTAATTTTCGTCAAGTTTTACTTTGAAAGGAAAGTAGTTACCATTCTTCTCGGTATTAATTCGGCCATTACGACATACATTTGTTTTAATGATTGTCCTAATAGAACATTTCTTCCCAAAAATTACCAATTTTGAATTGTATGACCCTCACCCCAACCCAACACCGTGTGAGCCTTAAGCGACGTCGGCAAATAAAGTAAACTTGGCAATTTTGGTAATTGATAATTTGTATTTTTGAATTAT</canonical>
            <polymorphic>CACCAACCAAAGGCTTTCAACCTGGAGACGGAATCAGAAGGACATTTTCCTATTTGTTCAACCACCCTGATAATTATGGAAGAAGGGCCCCTAGTCTACCTTTTATCGAATATTATAAACCACAATTCCTGTCCGATATGAATTTAAAACATGAAACGAGGAGCACGAGGACACACCTTTCAATTTCAAGAAAACAATTTTCAAATACTGCAAGAATGATGTGCAAATCTTGGTGGAAGCAGTTGTCCAATTAAAAATCCTCAAAAATGTGAGTAAAAATTCATGAAGTCTCGCAAAATTTTAGTTTTTCAGTGTCATGATGCATACCGCCTGAGGCCAAGAGACGCAATGTATGGAGGAAGAACTCAACAATTTTAAAAGTTTTGTCAAGGCCTGCTCAGAAGGAGTTTCATGCTTATCAAAAACTGCTGCCATCACCGCGGACATATATCATATACATCCAACCTGGTTCGATAGAAGTGGAACACGATGACGAGAARATCGATTGCAGATTAATGTCACTGAGATTGAAGAAGAAGGAGTTTCAACTTATGAAGAACGACAGTTGATATTCATTGCCGGAGACATTTATGCCGGAGTCAAGGACTCTTCGTTTCCAATGATGTTAGCTGTCTCCTTTGTAGCCAGTATACGTTCTCGGAGAACCATGATTGTCGACGGTGTAACAAGTTGGTTTACGAGTTGGTATTTCATCGCTATGGCTAGTATCGTCATCGTTGTGCTGATCATCGTTGGAGTAATTTTCGTCAAGTTTTACTTTGAAAGGAAAGTAGTTACCATTCTTCTCGGTATTAATTCGGCCATTACGACATACATTTGTTTTAATGATTGTCCTAATAGAACATTTCTTCCCAAAAATTACCAATTTTGAATTGTATGACCCTCACCCCAACCCAACACCGTGTGAGCCTTAAGCGACGTCGGCAAATAAAGTAAACTTGGCAATTTTGGTAATTGATAATTTGTATTTTTGAATTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>499 256 245</canonical_bands>
                <polymorphic_bands>744 256</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAGTGTCATGATGCATACC</pcr_primer_p1>
		<pcr_primer_p2>CTTCATAAGTTGAAACTCCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCAGTGTCATGATGCATACCGCCTGAGGCCAAGAGACGCAATGTATGGAGGAAGAACTCAACAATTTTAAAAGTTTTGTCAAGGCCTGCTCAGAAGGAGTTTCATGCTTATCAAAAACTGCTGCCATCACCGCGGACATATATCATATACATCCAACCTGGTTCGATAGAAGTGGAACACGATGACGAGAAGATCGATTGCAGATTAATGTCACTGAGATTGAAGAAGAAGGAGTTTCAACTTATGAAG</canonical_amplicon>
		<polymorphic_amplicon>TCAGTGTCATGATGCATACCGCCTGAGGCCAAGAGACGCAATGTATGGAGGAAGAACTCAACAATTTTAAAAGTTTTGTCAAGGCCTGCTCAGAAGGAGTTTCATGCTTATCAAAAACTGCTGCCATCACCGCGGACATATATCATATACATCCAACCTGGTTCGATAGAAGTGGAACACGATGACGAGAARATCGATTGCAGATTAATGTCACTGAGATTGAAGAAGAAGGAGTTTCAACTTATGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4216</snp_id>
        <super_contig>c002000444.Contig4</super_contig>
        <contig_pos>56324</contig_pos>
        <strand>+</strand>
        <context>GTCTCCTTTG[G/T]AGCCAGTATA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGCCGGAGTCAAGGACTCTTCGTTTCCAATGATGTTAGCTGTCTCCTTTG</left_flank>
        <right_flank>AGCCAGTATACGTTCTCGGAGAACCATGATTGTCGACGGTGTAACAAGTT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAAAACATGAAACGAGGAGCACGAGGACACACCTTTCAATTTCAAGAAAACAATTTTCAAATACTGCAAGAATGATGTGCAAATCTTGGTGGAAGCAGTTGTCCAATTAAAAATCCTCAAAAATGTGAGTAAAAATTCATGAAGTCTCGCAAAATTTTAGTTTTTCAGTGTCATGATGCATACCGCCTGAGGCCAAGAGACGCAATGTATGGAGGAAGAACTCAACAATTTTAAAAGTTTTGTCAAGGCCTGCTCAGAAGGAGTTTCATGCTTATCAAAAACTGCTGCCATCACCGCGGACATATATCATATACATCCAACCTGGTTCGATAGAAGTGGAACACGATGACGAGAAGATCGATTGCAGATTAATGTCACTGAGATTGAAGAAGAAGGAGTTTCAACTTATGAAGAACGACAGTTGATATTCATTGCCGGAGACATTTATGCCGGAGTCAAGGACTCTTCGTTTCCAATGATGTTAGCTGTCTCCTTTGTAGCCAGTATACGTTCTCGGAGAACCATGATTGTCGACGGTGTAACAAGTTGGTTTACGAGTTGGTATTTCATCGCTATGGCTAGTATCGTCATCGTTGTGCTGATCATCGTTGGAGTAATTTTCGTCAAGTTTTACTTTGAAAGGAAAGTAGTTACCATTCTTCTCGGTATTAATTCGGCCATTACGACATACATTTGTTTTAATGATTGTCCTAATAGAACATTTCTTCCCAAAAATTACCAATTTTGAATTGTATGACCCTCACCCCAACCCAACACCGTGTGAGCCTTAAGCGACGTCGGCAAATAAAGTAAACTTGGCAATTTTGGTAATTGATAATTTGTATTTTTGAATTATTTGATATTTGAATTAAAGTATGTTTTCTGAATTTTTCTAAACTTCTTAATAAAATTTTTCTCAAAAATAACAATTCTTTCACTAGAAGTTCTGCACAGCGATTTTTCAAACAAAAAGTATTTTAGAAATCCATAGTTTCAGA</canonical>
            <polymorphic>TTTAAAACATGAAACGAGGAGCACGAGGACACACCTTTCAATTTCAAGAAAACAATTTTCAAATACTGCAAGAATGATGTGCAAATCTTGGTGGAAGCAGTTGTCCAATTAAAAATCCTCAAAAATGTGAGTAAAAATTCATGAAGTCTCGCAAAATTTTAGTTTTTCAGTGTCATGATGCATACCGCCTGAGGCCAAGAGACGCAATGTATGGAGGAAGAACTCAACAATTTTAAAAGTTTTGTCAAGGCCTGCTCAGAAGGAGTTTCATGCTTATCAAAAACTGCTGCCATCACCGCGGACATATATCATATACATCCAACCTGGTTCGATAGAAGTGGAACACGATGACGAGAAGATCGATTGCAGATTAATGTCACTGAGATTGAAGAAGAAGGAGTTTCAACTTATGAAGAACGACAGTTGATATTCATTGCCGGAGACATTTATGCCGGAGTCAAGGACTCTTCGTTTCCAATGATGTTAGCTGTCTCCTTTGKAGCCAGTATACGTTCTCGGAGAACCATGATTGTCGACGGTGTAACAAGTTGGTTTACGAGTTGGTATTTCATCGCTATGGCTAGTATCGTCATCGTTGTGCTGATCATCGTTGGAGTAATTTTCGTCAAGTTTTACTTTGAAAGGAAAGTAGTTACCATTCTTCTCGGTATTAATTCGGCCATTACGACATACATTTGTTTTAATGATTGTCCTAATAGAACATTTCTTCCCAAAAATTACCAATTTTGAATTGTATGACCCTCACCCCAACCCAACACCGTGTGAGCCTTAAGCGACGTCGGCAAATAAAGTAAACTTGGCAATTTTGGTAATTGATAATTTGTATTTTTGAATTATTTGATATTTGAATTAAAGTATGTTTTCTGAATTTTTCTAAACTTCTTAATAAAATTTTTCTCAAAAATAACAATTCTTTCACTAGAAGTTCTGCACAGCGATTTTTCAAACAAAAAGTATTTTAGAAATCCATAGTTTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGGAGTTTCAACTTATGAAGA</pcr_primer_p1>
		<pcr_primer_p2>TCAAAGTAAAACTTGACGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAGGAGTTTCAACTTATGAAGAACGACAGTTGATATTCATTGCCGGAGACATTTATGCCGGAGTCAAGGACTCTTCGTTTCCAATGATGTTAGCTGTCTCCTTTGTAGCCAGTATACGTTCTCGGAGAACCATGATTGTCGACGGTGTAACAAGTTGGTTTACGAGTTGGTATTTCATCGCTATGGCTAGTATCGTCATCGTTGTGCTGATCATCGTTGGAGTAATTTTCGTCAAGTTTTACTTTGA</canonical_amplicon>
		<polymorphic_amplicon>GAAGGAGTTTCAACTTATGAAGAACGACAGTTGATATTCATTGCCGGAGACATTTATGCCGGAGTCAAGGACTCTTCGTTTCCAATGATGTTAGCTGTCTCCTTTGKAGCCAGTATACGTTCTCGGAGAACCATGATTGTCGACGGTGTAACAAGTTGGTTTACGAGTTGGTATTTCATCGCTATGGCTAGTATCGTCATCGTTGTGCTGATCATCGTTGGAGTAATTTTCGTCAAGTTTTACTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4217</snp_id>
        <super_contig>c002000444.Contig4</super_contig>
        <contig_pos>58734</contig_pos>
        <strand>+</strand>
        <context>CAAAATTTGA[C/T]TGTTTTCCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTCTTGCTCTGAAAAAATACTTCCATCAACTTTCCTGTCCAAAATTTGA</left_flank>
        <right_flank>TGTTTTCCTCTCGTTTGAAGAATCAATAGTGTTTCTTATCTTTTTTCACA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATCTCAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGTACCTTCTCAACAAAATTTGAATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGACACTTATTCTACACTGTTAAGTGCATACTCTTGCTCTGAAAAAATACTTCCATCAACTTTCCTGTCCAAAATTTGATTGTTTTCCTCTCGTTTGAAGAATCAATAGTGTTTCTTATCTTTTTTCACATTTTCTGAAAGATTATAACAGTATTATCGAAGATTTAGAATAAATAAGAGGAATAAATGTTTGCGATAACAACACTGAAAACTCAAAAAGTGACACAATCAAAAGTCTTCAAACAATATTGTTTTTTCAATGCGATTTTTTTCTCTGCTCGAATCTACAAAAATTTTACGATCATTTTTAGAATTCATCGCTGTTTGTGTACCAGACATGAGCGGAATTCCATATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCGGATTTTAAATTTTTCATTCCTTATTCCTTATTCCTGTTTTTTTGTTATTCCTCTTCAAAAATTTAAAACTTTTTCTATCAAAAATCAGAAAAAAATTCTCAAAACTGGGAAACAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGTTCAACGGAGCA</canonical>
            <polymorphic>ACTGGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATCTCAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGTACCTTCTCAACAAAATTTGAATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGACACTTATTCTACACTGTTAAGTGCATACTCTTGCTCTGAAAAAATACTTCCATCAACTTTCCTGTCCAAAATTTGAYTGTTTTCCTCTCGTTTGAAGAATCAATAGTGTTTCTTATCTTTTTTCACATTTTCTGAAAGATTATAACAGTATTATCGAAGATTTAGAATAAATAAGAGGAATAAATGTTTGCGATAACAACACTGAAAACTCAAAAAGTGACACAATCAAAAGTCTTCAAACAATATTGTTTTTTCAATGCGATTTTTTTCTCTGCTCGAATCTACAAAAATTTTACGATCATTTTTAGAATTCATCGCTGTTTGTGTACCAGACATGAGCGGAATTCCATATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCGGATTTTAAATTTTTCATTCCTTATTCCTTATTCCTGTTTTTTTGTTATTCCTCTTCAAAAATTTAAAACTTTTTCTATCAAAAATCAGAAAAAAATTCTCAAAACTGGGAAACAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGTTCAACGGAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACCAGCTTGATACTTACAGAC</pcr_primer_p1>
		<pcr_primer_p2>GATTGTGTCACTTTTTGAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACACCAGCTTGATACTTACAGACACTTATTCTACACTGTTAAGTGCATACTCTTGCTCTGAAAAAATACTTCCATCAACTTTCCTGTCCAAAATTTGATTGTTTTCCTCTCGTTTGAAGAATCAATAGTGTTTCTTATCTTTTTTCACATTTTCTGAAAGATTATAACAGTATTATCGAAGATTTAGAATAAATAAGAGGAATAAATGTTTGCGATAACAACACTGAAAACTCAAAAAGTGACACAATC</canonical_amplicon>
		<polymorphic_amplicon>ACACCAGCTTGATACTTACAGACACTTATTCTACACTGTTAAGTGCATACTCTTGCTCTGAAAAAATACTTCCATCAACTTTCCTGTCCAAAATTTGAYTGTTTTCCTCTCGTTTGAAGAATCAATAGTGTTTCTTATCTTTTTTCACATTTTCTGAAAGATTATAACAGTATTATCGAAGATTTAGAATAAATAAGAGGAATAAATGTTTGCGATAACAACACTGAAAACTCAAAAAGTGACACAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4218</snp_id>
        <super_contig>c002000444.Contig4</super_contig>
        <contig_pos>58605</contig_pos>
        <strand></strand>
        <context>AATTTWWTTG[A/C]MAGAAAAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTG</left_flank>
        <right_flank>GAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCAACACTACGTCCAAAATACTTGATAGAGCTACATCAGACGAATCGCCATCAGGAATGTATAAGCTGAATCCCTTCGACAAGAAGAAAACTTCAAAGAGAATGATAATGAAAGAGAGCTATTATAAACTGGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATCTCAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGTACCTTCTCAACAAAATTTGAATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGACACTTATTCTACACTGTTAAGTGCATACTCTTGCTCTGAAAAAATACTTCCATCAACTTTCCTGTCCAAAATTTGATTGTTTTCCTCTCGTTTGAAGAATCAATAGTGTTTCTTATCTTTTTTCACATTTTCTGAAAGATTATAACAGTATTATCGAAGATTTAGAATAAATAAGAGGAATAAATGTTTGCGATAACAACACTGAAAACTCAAAAAGTGACACAATCAAAAGTCTTCAAACAATATTGTTTTTTCAATGCGATTTTTTTCTCTGCTCGAATCTACAAAAATTTTACGATCATTTTTAGAATTCATCGCTGTTTGTGTACCAGACATGAGCGGAATTCCATATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCGGATTTTAAATTTTTCATTCCTTATTCCTTATT</canonical>
            <polymorphic>TCTCAACACTACGTCCAAAATACTTGATAGAGCTACATCAGACGAATCGCCATCAGGAATGTATAAGCTGAATCCCTTCGACAAGAAGAAAACTTCAAAGAGAATGATAATGAAAGAGAGCTATTATAAACTGGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATCTCAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGTACCTTCTCAACAAAATTTGAATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGMGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGACACTTATTCTACACTGTTAAGTGCATACTCTTGCTCTGAAAAAATACTTCCATCAACTTTCCTGTCCAAAATTTGATTGTTTTCCTCTCGTTTGAAGAATCAATAGTGTTTCTTATCTTTTTTCACATTTTCTGAAAGATTATAACAGTATTATCGAAGATTTAGAATAAATAAGAGGAATAAATGTTTGCGATAACAACACTGAAAACTCAAAAAGTGACACAATCAAAAGTCTTCAAACAATATTGTTTTTTCAATGCGATTTTTTTCTCTGCTCGAATCTACAAAAATTTTACGATCATTTTTAGAATTCATCGCTGTTTGTGTACCAGACATGAGCGGAATTCCATATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCGGATTTTAAATTTTTCATTCCTTATTCCTTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAGCATTCAAAACATTCACTT</pcr_primer_p1>
		<pcr_primer_p2>GTGTCTGTAAGTATCAAGCTGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGACAC</canonical_amplicon>
		<polymorphic_amplicon>TTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGMGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4219</snp_id>
        <super_contig>c002000444.Contig4</super_contig>
        <contig_pos>58600</contig_pos>
        <strand></strand>
        <context>AAATAAATTT[A/T]WTTGMMAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTT</left_flank>
        <right_flank>ATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATAC</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCATTCTCAACACTACGTCCAAAATACTTGATAGAGCTACATCAGACGAATCGCCATCAGGAATGTATAAGCTGAATCCCTTCGACAAGAAGAAAACTTCAAAGAGAATGATAATGAAAGAGAGCTATTATAAACTGGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATCTCAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGTACCTTCTCAACAAAATTTGAATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGACACTTATTCTACACTGTTAAGTGCATACTCTTGCTCTGAAAAAATACTTCCATCAACTTTCCTGTCCAAAATTTGATTGTTTTCCTCTCGTTTGAAGAATCAATAGTGTTTCTTATCTTTTTTCACATTTTCTGAAAGATTATAACAGTATTATCGAAGATTTAGAATAAATAAGAGGAATAAATGTTTGCGATAACAACACTGAAAACTCAAAAAGTGACACAATCAAAAGTCTTCAAACAATATTGTTTTTTCAATGCGATTTTTTTCTCTGCTCGAATCTACAAAAATTTTACGATCATTTTTAGAATTCATCGCTGTTTGTGTACCAGACATGAGCGGAATTCCATATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCGGATTTTAAATTTTTCATTCCTTATTCC</canonical>
            <polymorphic>TTCATTCTCAACACTACGTCCAAAATACTTGATAGAGCTACATCAGACGAATCGCCATCAGGAATGTATAAGCTGAATCCCTTCGACAAGAAGAAAACTTCAAAGAGAATGATAATGAAAGAGAGCTATTATAAACTGGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATCTCAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGTACCTTCTCAACAAAATTTGAATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTWATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGACACTTATTCTACACTGTTAAGTGCATACTCTTGCTCTGAAAAAATACTTCCATCAACTTTCCTGTCCAAAATTTGATTGTTTTCCTCTCGTTTGAAGAATCAATAGTGTTTCTTATCTTTTTTCACATTTTCTGAAAGATTATAACAGTATTATCGAAGATTTAGAATAAATAAGAGGAATAAATGTTTGCGATAACAACACTGAAAACTCAAAAAGTGACACAATCAAAAGTCTTCAAACAATATTGTTTTTTCAATGCGATTTTTTTCTCTGCTCGAATCTACAAAAATTTTACGATCATTTTTAGAATTCATCGCTGTTTGTGTACCAGACATGAGCGGAATTCCATATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCGGATTTTAAATTTTTCATTCCTTATTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>469 404 76 22 21 8</canonical_bands>
                <polymorphic_bands>469 404 97 22 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>263 219 163 127 81 34 24 20 20 20 16 8 5</canonical_bands>
                <polymorphic_bands>263 219 163 132 81 34 24 20 20 20 16 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTAGCATTCAAAACATTCAC</pcr_primer_p1>
		<pcr_primer_p2>GTCTGTAAGTATCAAGCTGGTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGAC</canonical_amplicon>
		<polymorphic_amplicon>GTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTWATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4220</snp_id>
        <super_contig>c002000444.Contig4</super_contig>
        <contig_pos>58578</contig_pos>
        <strand></strand>
        <context>GTTAATTTTT[T/A]WAAAAAGTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTT</left_flank>
        <right_flank>AAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAAC</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGATCCCTGACGGTGACACCATTCATTCTCAACACTACGTCCAAAATACTTGATAGAGCTACATCAGACGAATCGCCATCAGGAATGTATAAGCTGAATCCCTTCGACAAGAAGAAAACTTCAAAGAGAATGATAATGAAAGAGAGCTATTATAAACTGGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATCTCAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGTACCTTCTCAACAAAATTTGAATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGACACTTATTCTACACTGTTAAGTGCATACTCTTGCTCTGAAAAAATACTTCCATCAACTTTCCTGTCCAAAATTTGATTGTTTTCCTCTCGTTTGAAGAATCAATAGTGTTTCTTATCTTTTTTCACATTTTCTGAAAGATTATAACAGTATTATCGAAGATTTAGAATAAATAAGAGGAATAAATGTTTGCGATAACAACACTGAAAACTCAAAAAGTGACACAATCAAAAGTCTTCAAACAATATTGTTTTTTCAATGCGATTTTTTTCTCTGCTCGAATCTACAAAAATTTTACGATCATTTTTAGAATTCATCGCTGTTTGTGTACCAGACATGAGCGGAATTCCATATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCGGATTT</canonical>
            <polymorphic>AGGATCCCTGACGGTGACACCATTCATTCTCAACACTACGTCCAAAATACTTGATAGAGCTACATCAGACGAATCGCCATCAGGAATGTATAAGCTGAATCCCTTCGACAAGAAGAAAACTTCAAAGAGAATGATAATGAAAGAGAGCTATTATAAACTGGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATCTCAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGTACCTTCTCAACAAAATTTGAATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTWAAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGACACTTATTCTACACTGTTAAGTGCATACTCTTGCTCTGAAAAAATACTTCCATCAACTTTCCTGTCCAAAATTTGATTGTTTTCCTCTCGTTTGAAGAATCAATAGTGTTTCTTATCTTTTTTCACATTTTCTGAAAGATTATAACAGTATTATCGAAGATTTAGAATAAATAAGAGGAATAAATGTTTGCGATAACAACACTGAAAACTCAAAAAGTGACACAATCAAAAGTCTTCAAACAATATTGTTTTTTCAATGCGATTTTTTTCTCTGCTCGAATCTACAAAAATTTTACGATCATTTTTAGAATTCATCGCTGTTTGTGTACCAGACATGAGCGGAATTCCATATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCGGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>491 404 76 21 8</canonical_bands>
                <polymorphic_bands>491 404 76 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTAGCATTCAAAACATTCAC</pcr_primer_p1>
		<pcr_primer_p2>GTCTGTAAGTATCAAGCTGGTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGAC</canonical_amplicon>
		<polymorphic_amplicon>GTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTWAAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4221</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>14068</contig_pos>
        <strand>+</strand>
        <context>AGGAAAAAGT[G/T]AATCGAGAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGACACACACAATCATAAACAAGAGGAAAGAAGAAGAAAAAGGAAAAAGT</left_flank>
        <right_flank>AATCGAGAGAAAATGAGGACAGTTTTAATGGTTGTTATGGCGTTGGGGGA</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTCTATTGTCCAGTGCCAATTTTAACGATCTGCGATTCTCACACCTCATTTTTCATTCTCATTATTCAATGTTGACTGACTACTGAGGTGATCAAGGTGAAATGGAGAAAATACGATGAAGAATAGAATAGAACGAACAAGAAAAAATTTGCATTTTCATAGATTTTCAACACAATAGATCATCGACCTCATTTTTTCGTTGTCGAAGAAAAAAGTTCCTTTGAAAAAATTCGGCTGATCGAAGCAAACAAACTTCTAGAAAATTCTAGAAAATTCTATTGATAAAACCAATTTCCAAACGAATCAATCCTCCTTCTTTGTGTTGCAGTGTATTCCTTTTTTTCATAGATGTTCTTGTGAAACAAAGGAAAGATCAAGCAAGGAATCTGTAGTAAACCAACTTTTTTTTTTGGAGTTTTATTAAAAAAAGAGAAAGGGGAACCGTAGTGACACACACAATCATAAACAAGAGGAAAGAAGAAGAAAAAGGAAAAAGTTAATCGAGAGAAAATGAGGACAGTTTTAATGGTTGTTATGGCGTTGGGGGAACAGAAATGGCGATGGTGGTTTTGGAAAATGCCATACCGTTAACTTTAAGCCCATATATCTCGATTCCTATCAAAGATATCAAAAAGTGGTCAACTGACTAAATATTTTTGATATTATGATAAACATTTTGTCAGTGAATCACTTTTTGATATCTTTCATAGAAAATGAGATATAAGGGTTCAAAATTGGCGGTCTGGGGCAGTTGAGCTGGTGGCGGCGCGGCACCTCCAAGGATGGGCGCCGCCACCCTATACTTACTAACTTTGAGCTCAATTATGTCGGTGCTTATTAGAAATATCAGAAAGTGGTCAGCTGACAACATTTTTTTGATAATATAATCAATATTTTATCAGTCAACGACATGTTTCATAATAAATGAGATACATTGGTTCAAAGTTAAGAGGGGGTGGGGGGGGGGGTTGGTCATCAGAGTGTTTACGGTAATTGAA</canonical>
            <polymorphic>TCTTCTATTGTCCAGTGCCAATTTTAACGATCTGCGATTCTCACACCTCATTTTTCATTCTCATTATTCAATGTTGACTGACTACTGAGGTGATCAAGGTGAAATGGAGAAAATACGATGAAGAATAGAATAGAACGAACAAGAAAAAATTTGCATTTTCATAGATTTTCAACACAATAGATCATCGACCTCATTTTTTCGTTGTCGAAGAAAAAAGTTCCTTTGAAAAAATTCGGCTGATCGAAGCAAACAAACTTCTAGAAAATTCTAGAAAATTCTATTGATAAAACCAATTTCCAAACGAATCAATCCTCCTTCTTTGTGTTGCAGTGTATTCCTTTTTTTCATAGATGTTCTTGTGAAACAAAGGAAAGATCAAGCAAGGAATCTGTAGTAAACCAACTTTTTTTTTTGGAGTTTTATTAAAAAAAGAGAAAGGGGAACCGTAGTGACACACACAATCATAAACAAGAGGAAAGAAGAAGAAAAAGGAAAAAGTKAATCGAGAGAAAATGAGGACAGTTTTAATGGTTGTTATGGCGTTGGGGGAACAGAAATGGCGATGGTGGTTTTGGAAAATGCCATACCGTTAACTTTAAGCCCATATATCTCGATTCCTATCAAAGATATCAAAAAGTGGTCAACTGACTAAATATTTTTGATATTATGATAAACATTTTGTCAGTGAATCACTTTTTGATATCTTTCATAGAAAATGAGATATAAGGGTTCAAAATTGGCGGTCTGGGGCAGTTGAGCTGGTGGCGGCGCGGCACCTCCAAGGATGGGCGCCGCCACCCTATACTTACTAACTTTGAGCTCAATTATGTCGGTGCTTATTAGAAATATCAGAAAGTGGTCAGCTGACAACATTTTTTTGATAATATAATCAATATTTTATCAGTCAACGACATGTTTCATAATAAATGAGATACATTGGTTCAAAGTTAAGAGGGGGTGGGGGGGGGGGTTGGTCATCAGAGTGTTTACGGTAATTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>399 352 76 65 52 26 24 6</canonical_bands>
                <polymorphic_bands>399 352 102 65 52 24 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTGACACACACAATCATAAACA</pcr_primer_p1>
		<pcr_primer_p2>ATTACCGTAAACACTCTGATGAC</pcr_primer_p2>
		<pcr_amplicon_size>549</pcr_amplicon_size>
		<canonical_amplicon>AGTGACACACACAATCATAAACAAGAGGAAAGAAGAAGAAAAAGGAAAAAGTTAATCGAGAGAAAATGAGGACAGTTTTAATGGTTGTTATGGCGTTGGGGGAACAGAAATGGCGATGGTGGTTTTGGAAAATGCCATACCGTTAACTTTAAGCCCATATATCTCGATTCCTATCAAAGATATCAAAAAGTGGTCAACTGACTAAATATTTTTGATATTATGATAAACATTTTGTCAGTGAATCACTTTTTGATATCTTTCATAGAAAATGAGATATAAGGGTTCAAAATTGGCGGTCTGGGGCAGTTGAGCTGGTGGCGGCGCGGCACCTCCAAGGATGGGCGCCGCCACCCTATACTTACTAACTTTGAGCTCAATTATGTCGGTGCTTATTAGAAATATCAGAAAGTGGTCAGCTGACAACATTTTTTTGATAATATAATCAATATTTTATCAGTCAACGACATGTTTCATAATAAATGAGATACATTGGTTCAAAGTTAAGAGGGGGTGGGGGGGGGGGTTGGTCATCAGAGTGTTTACGGTAAT</canonical_amplicon>
		<polymorphic_amplicon>AGTGACACACACAATCATAAACAAGAGGAAAGAAGAAGAAAAAGGAAAAAGTKAATCGAGAGAAAATGAGGACAGTTTTAATGGTTGTTATGGCGTTGGGGGAACAGAAATGGCGATGGTGGTTTTGGAAAATGCCATACCGTTAACTTTAAGCCCATATATCTCGATTCCTATCAAAGATATCAAAAAGTGGTCAACTGACTAAATATTTTTGATATTATGATAAACATTTTGTCAGTGAATCACTTTTTGATATCTTTCATAGAAAATGAGATATAAGGGTTCAAAATTGGCGGTCTGGGGCAGTTGAGCTGGTGGCGGCGCGGCACCTCCAAGGATGGGCGCCGCCACCCTATACTTACTAACTTTGAGCTCAATTATGTCGGTGCTTATTAGAAATATCAGAAAGTGGTCAGCTGACAACATTTTTTTGATAATATAATCAATATTTTATCAGTCAACGACATGTTTCATAATAAATGAGATACATTGGTTCAAAGTTAAGAGGGGGTGGGGGGGGGGGTTGGTCATCAGAGTGTTTACGGTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4222</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>17935</contig_pos>
        <strand></strand>
        <context>GCATTTAAAA[A/G]cgcaaaccct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCTAATTTCAATTCGAGAGTGGGCAGACTCCTTAAAGGCGCATTTAAAA</left_flank>
        <right_flank>CGCAAACCCTGTAATAAAAGGACCCTCCACACTGTCAAGTTTCAGCTCAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTCAACAATTCGGCTTTCGGCGCGAGTTCGGTCAACAATGACAACATCATTGCAGTCGCTGAGAGTGTCTGAAAATGAATTAGACGTTTTAGATTAACTAGAATGACTCACTCCCAAAATAAGAGGTCTCGATAAAAGGGCGAAACCCCAAACAGAGACGCCCAAATCGAATTGTTCCATATGAGAACAAAGGGTGTTAGCAATTAGGTATACTTCTTTTCGATATGGGAACCAGATGGATCGGTTCTGGCACAGATAGCCTTTCGAGCGACAGATCTGAAAAGTATGAGGTGCTGAAAGTCGTGAAAAAAGTACAAGTTTTGAAAACAGAAGCTTCATTCTATAGTTCAAAAAAATTCCGGTCTTCTTTAAAATTTCCAGGCTCTCGCTCAAAAATTTTTTTTGTATTTTTCCCATTAAAATGTTCTTTATTTATGTACTACTCTGATCTAATTTCAATTCGAGAGTGGGCAGACTCCTTAAAGGCGCATTTAAAAACGCAAACCCTGTAATAAAAGGACCCTCCACACTGTCAAGTTTCAGCTCAATTATTTCGGCTCCTATAAGAGATATCAAAAATTAGTTCACTGATGAAATGTTTGTGAGATCATGATAAACAATTTGTCTGTTAACAATTGTTTTATATCTTTTACAGAAAATGAGATATAAGGGTTCCAAGTGGCGGCGCGTCACCTCCGAGGGTGGGCGCCACCCTATACCCAAACACTTTGAGCTTGATTATCTCGGTTTCTATGAGAGATATCAAAAATTTGTCAACTGATAACATGTTTGTTATTTTATGACAAACAATTTATTAGTTGACACTTTTTGAATATCTTTTACAGTTATCGAGAAAAAATGAATCGAAGATAAGAGTTGCGGTACTTTTGAAATTATTTCCTCGCCTTTTTTATCACAAAAAAAATTAGAAAAAATAGACCGGAAAATAATTACAAAAACACCAATAGTTTTTCGAAAAATACAGAAAAATACGACCA</canonical>
            <polymorphic>CATTCAACAATTCGGCTTTCGGCGCGAGTTCGGTCAACAATGACAACATCATTGCAGTCGCTGAGAGTGTCTGAAAATGAATTAGACGTTTTAGATTAACTAGAATGACTCACTCCCAAAATAAGAGGTCTCGATAAAAGGGCGAAACCCCAAACAGAGACGCCCAAATCGAATTGTTCCATATGAGAACAAAGGGTGTTAGCAATTAGGTATACTTCTTTTCGATATGGGAACCAGATGGATCGGTTCTGGCACAGATAGCCTTTCGAGCGACAGATCTGAAAAGTATGAGGTGCTGAAAGTCGTGAAAAAAGTACAAGTTTTGAAAACAGAAGCTTCATTCTATAGTTCAAAAAAATTCCGGTCTTCTTTAAAATTTCCAGGCTCTCGCTCAAAAATTTTTTTTGTATTTTTCCCATTAAAATGTTCTTTATTTATGTACTACTCTGATCTAATTTCAATTCGAGAGTGGGCAGACTCCTTAAAGGCGCATTTAAAARCGCAAACCCTGTAATAAAAGGACCCTCCACACTGTCAAGTTTCAGCTCAATTATTTCGGCTCCTATAAGAGATATCAAAAATTAGTTCACTGATGAAATGTTTGTGAGATCATGATAAACAATTTGTCTGTTAACAATTGTTTTATATCTTTTACAGAAAATGAGATATAAGGGTTCCAAGTGGCGGCGCGTCACCTCCGAGGGTGGGCGCCACCCTATACCCAAACACTTTGAGCTTGATTATCTCGGTTTCTATGAGAGATATCAAAAATTTGTCAACTGATAACATGTTTGTTATTTTATGACAAACAATTTATTAGTTGACACTTTTTGAATATCTTTTACAGTTATCGAGAAAAAATGAATCGAAGATAAGAGTTGCGGTACTTTTGAAATTATTTCCTCGCCTTTTTTATCACAAAAAAAATTAGAAAAAATAGACCGGAAAATAATTACAAAAACACCAATAGTTTTTCGAAAAATACAGAAAAATACGACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCCATTAAAATGTTCTTTATTT</pcr_primer_p1>
		<pcr_primer_p2>TGTAATTATTTTCCGGTCTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>545</pcr_amplicon_size>
		<canonical_amplicon>TTCCCATTAAAATGTTCTTTATTTATGTACTACTCTGATCTAATTTCAATTCGAGAGTGGGCAGACTCCTTAAAGGCGCATTTAAAAACGCAAACCCTGTAATAAAAGGACCCTCCACACTGTCAAGTTTCAGCTCAATTATTTCGGCTCCTATAAGAGATATCAAAAATTAGTTCACTGATGAAATGTTTGTGAGATCATGATAAACAATTTGTCTGTTAACAATTGTTTTATATCTTTTACAGAAAATGAGATATAAGGGTTCCAAGTGGCGGCGCGTCACCTCCGAGGGTGGGCGCCACCCTATACCCAAACACTTTGAGCTTGATTATCTCGGTTTCTATGAGAGATATCAAAAATTTGTCAACTGATAACATGTTTGTTATTTTATGACAAACAATTTATTAGTTGACACTTTTTGAATATCTTTTACAGTTATCGAGAAAAAATGAATCGAAGATAAGAGTTGCGGTACTTTTGAAATTATTTCCTCGCCTTTTTTATCACAAAAAAAATTAGAAAAAATAGACCGGAAAATAATTACA</canonical_amplicon>
		<polymorphic_amplicon>TTCCCATTAAAATGTTCTTTATTTATGTACTACTCTGATCTAATTTCAATTCGAGAGTGGGCAGACTCCTTAAAGGCGCATTTAAAARCGCAAACCCTGTAATAAAAGGACCCTCCACACTGTCAAGTTTCAGCTCAATTATTTCGGCTCCTATAAGAGATATCAAAAATTAGTTCACTGATGAAATGTTTGTGAGATCATGATAAACAATTTGTCTGTTAACAATTGTTTTATATCTTTTACAGAAAATGAGATATAAGGGTTCCAAGTGGCGGCGCGTCACCTCCGAGGGTGGGCGCCACCCTATACCCAAACACTTTGAGCTTGATTATCTCGGTTTCTATGAGAGATATCAAAAATTTGTCAACTGATAACATGTTTGTTATTTTATGACAAACAATTTATTAGTTGACACTTTTTGAATATCTTTTACAGTTATCGAGAAAAAATGAATCGAAGATAAGAGTTGCGGTACTTTTGAAATTATTTCCTCGCCTTTTTTATCACAAAAAAAATTAGAAAAAATAGACCGGAAAATAATTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4223</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>17814</contig_pos>
        <strand>+</strand>
        <context>CTTYAAAATT[C/T]CCAGGCTCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAGAAGCTTCATTCTATAGTTCAAAAAAATTCCGGTCTTCTTTAAAATT</left_flank>
        <right_flank>CCAGGCTCTCGCTCAAAAATTTTTTTTGTATTTTTCCCATTAAAATGTTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTAGTTGTTGAGCCCCCACCCCCTTGTATTTGTACTTACGGTGTAAAAATACAGAAAGAAAAAGATTAAAAAAAAGCATTTTTAAAGAAAAATGAAAATTTATACAATTCGTTAAACTTCATTCAACAATTCGGCTTTCGGCGCGAGTTCGGTCAACAATGACAACATCATTGCAGTCGCTGAGAGTGTCTGAAAATGAATTAGACGTTTTAGATTAACTAGAATGACTCACTCCCAAAATAAGAGGTCTCGATAAAAGGGCGAAACCCCAAACAGAGACGCCCAAATCGAATTGTTCCATATGAGAACAAAGGGTGTTAGCAATTAGGTATACTTCTTTTCGATATGGGAACCAGATGGATCGGTTCTGGCACAGATAGCCTTTCGAGCGACAGATCTGAAAAGTATGAGGTGCTGAAAGTCGTGAAAAAAGTACAAGTTTTGAAAACAGAAGCTTCATTCTATAGTTCAAAAAAATTCCGGTCTTCTTTAAAATTTCCAGGCTCTCGCTCAAAAATTTTTTTTGTATTTTTCCCATTAAAATGTTCTTTATTTATGTACTACTCTGATCTAATTTCAATTCGAGAGTGGGCAGACTCCTTAAAGGCGCATTTAAAAACGCAAACCCTGTAATAAAAGGACCCTCCACACTGTCAAGTTTCAGCTCAATTATTTCGGCTCCTATAAGAGATATCAAAAATTAGTTCACTGATGAAATGTTTGTGAGATCATGATAAACAATTTGTCTGTTAACAATTGTTTTATATCTTTTACAGAAAATGAGATATAAGGGTTCCAAGTGGCGGCGCGTCACCTCCGAGGGTGGGCGCCACCCTATACCCAAACACTTTGAGCTTGATTATCTCGGTTTCTATGAGAGATATCAAAAATTTGTCAACTGATAACATGTTTGTTATTTTATGACAAACAATTTATTAGTTGACACTTTTTGAATATCTTTTACAGTTATCGAGAAAAAATGAATCGAAGATAAGAGT</canonical>
            <polymorphic>CTTTAGTTGTTGAGCCCCCACCCCCTTGTATTTGTACTTACGGTGTAAAAATACAGAAAGAAAAAGATTAAAAAAAAGCATTTTTAAAGAAAAATGAAAATTTATACAATTCGTTAAACTTCATTCAACAATTCGGCTTTCGGCGCGAGTTCGGTCAACAATGACAACATCATTGCAGTCGCTGAGAGTGTCTGAAAATGAATTAGACGTTTTAGATTAACTAGAATGACTCACTCCCAAAATAAGAGGTCTCGATAAAAGGGCGAAACCCCAAACAGAGACGCCCAAATCGAATTGTTCCATATGAGAACAAAGGGTGTTAGCAATTAGGTATACTTCTTTTCGATATGGGAACCAGATGGATCGGTTCTGGCACAGATAGCCTTTCGAGCGACAGATCTGAAAAGTATGAGGTGCTGAAAGTCGTGAAAAAAGTACAAGTTTTGAAAACAGAAGCTTCATTCTATAGTTCAAAAAAATTCCGGTCTTCTTTAAAATTYCCAGGCTCTCGCTCAAAAATTTTTTTTGTATTTTTCCCATTAAAATGTTCTTTATTTATGTACTACTCTGATCTAATTTCAATTCGAGAGTGGGCAGACTCCTTAAAGGCGCATTTAAAAACGCAAACCCTGTAATAAAAGGACCCTCCACACTGTCAAGTTTCAGCTCAATTATTTCGGCTCCTATAAGAGATATCAAAAATTAGTTCACTGATGAAATGTTTGTGAGATCATGATAAACAATTTGTCTGTTAACAATTGTTTTATATCTTTTACAGAAAATGAGATATAAGGGTTCCAAGTGGCGGCGCGTCACCTCCGAGGGTGGGCGCCACCCTATACCCAAACACTTTGAGCTTGATTATCTCGGTTTCTATGAGAGATATCAAAAATTTGTCAACTGATAACATGTTTGTTATTTTATGACAAACAATTTATTAGTTGACACTTTTTGAATATCTTTTACAGTTATCGAGAAAAAATGAATCGAAGATAAGAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>379 373 110 98 22 18</canonical_bands>
                <polymorphic_bands>379 373 110 98 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGGGTGTTAGCAATTAGGTAT</pcr_primer_p1>
		<pcr_primer_p2>TAAAGAACATTTTAATGGGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAAGGGTGTTAGCAATTAGGTATACTTCTTTTCGATATGGGAACCAGATGGATCGGTTCTGGCACAGATAGCCTTTCGAGCGACAGATCTGAAAAGTATGAGGTGCTGAAAGTCGTGAAAAAAGTACAAGTTTTGAAAACAGAAGCTTCATTCTATAGTTCAAAAAAATTCCGGTCTTCTTTAAAATTTCCAGGCTCTCGCTCAAAAATTTTTTTTGTATTTTTCCCATTAAAATGTTCTTTA</canonical_amplicon>
		<polymorphic_amplicon>AAAGGGTGTTAGCAATTAGGTATACTTCTTTTCGATATGGGAACCAGATGGATCGGTTCTGGCACAGATAGCCTTTCGAGCGACAGATCTGAAAAGTATGAGGTGCTGAAAGTCGTGAAAAAAGTACAAGTTTTGAAAACAGAAGCTTCATTCTATAGTTCAAAAAAATTCCGGTCTTCTTTAAAATTYCCAGGCTCTCGCTCAAAAATTTTTTTTGTATTTTTCCCATTAAAATGTTCTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4224</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>17807</contig_pos>
        <strand>+</strand>
        <context>CGGTYTTCTT[C/T]AAAATTYCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGAAAACAGAAGCTTCATTCTATAGTTCAAAAAAATTCCGGTCTTCTT</left_flank>
        <right_flank>AAAATTTCCAGGCTCTCGCTCAAAAATTTTTTTTGTATTTTTCCCATTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGACAACTTTAGTTGTTGAGCCCCCACCCCCTTGTATTTGTACTTACGGTGTAAAAATACAGAAAGAAAAAGATTAAAAAAAAGCATTTTTAAAGAAAAATGAAAATTTATACAATTCGTTAAACTTCATTCAACAATTCGGCTTTCGGCGCGAGTTCGGTCAACAATGACAACATCATTGCAGTCGCTGAGAGTGTCTGAAAATGAATTAGACGTTTTAGATTAACTAGAATGACTCACTCCCAAAATAAGAGGTCTCGATAAAAGGGCGAAACCCCAAACAGAGACGCCCAAATCGAATTGTTCCATATGAGAACAAAGGGTGTTAGCAATTAGGTATACTTCTTTTCGATATGGGAACCAGATGGATCGGTTCTGGCACAGATAGCCTTTCGAGCGACAGATCTGAAAAGTATGAGGTGCTGAAAGTCGTGAAAAAAGTACAAGTTTTGAAAACAGAAGCTTCATTCTATAGTTCAAAAAAATTCCGGTCTTCTTTAAAATTTCCAGGCTCTCGCTCAAAAATTTTTTTTGTATTTTTCCCATTAAAATGTTCTTTATTTATGTACTACTCTGATCTAATTTCAATTCGAGAGTGGGCAGACTCCTTAAAGGCGCATTTAAAAACGCAAACCCTGTAATAAAAGGACCCTCCACACTGTCAAGTTTCAGCTCAATTATTTCGGCTCCTATAAGAGATATCAAAAATTAGTTCACTGATGAAATGTTTGTGAGATCATGATAAACAATTTGTCTGTTAACAATTGTTTTATATCTTTTACAGAAAATGAGATATAAGGGTTCCAAGTGGCGGCGCGTCACCTCCGAGGGTGGGCGCCACCCTATACCCAAACACTTTGAGCTTGATTATCTCGGTTTCTATGAGAGATATCAAAAATTTGTCAACTGATAACATGTTTGTTATTTTATGACAAACAATTTATTAGTTGACACTTTTTGAATATCTTTTACAGTTATCGAGAAAAAATGAATCGAAGA</canonical>
            <polymorphic>TCGACAACTTTAGTTGTTGAGCCCCCACCCCCTTGTATTTGTACTTACGGTGTAAAAATACAGAAAGAAAAAGATTAAAAAAAAGCATTTTTAAAGAAAAATGAAAATTTATACAATTCGTTAAACTTCATTCAACAATTCGGCTTTCGGCGCGAGTTCGGTCAACAATGACAACATCATTGCAGTCGCTGAGAGTGTCTGAAAATGAATTAGACGTTTTAGATTAACTAGAATGACTCACTCCCAAAATAAGAGGTCTCGATAAAAGGGCGAAACCCCAAACAGAGACGCCCAAATCGAATTGTTCCATATGAGAACAAAGGGTGTTAGCAATTAGGTATACTTCTTTTCGATATGGGAACCAGATGGATCGGTTCTGGCACAGATAGCCTTTCGAGCGACAGATCTGAAAAGTATGAGGTGCTGAAAGTCGTGAAAAAAGTACAAGTTTTGAAAACAGAAGCTTCATTCTATAGTTCAAAAAAATTCCGGTCTTCTTYAAAATTTCCAGGCTCTCGCTCAAAAATTTTTTTTGTATTTTTCCCATTAAAATGTTCTTTATTTATGTACTACTCTGATCTAATTTCAATTCGAGAGTGGGCAGACTCCTTAAAGGCGCATTTAAAAACGCAAACCCTGTAATAAAAGGACCCTCCACACTGTCAAGTTTCAGCTCAATTATTTCGGCTCCTATAAGAGATATCAAAAATTAGTTCACTGATGAAATGTTTGTGAGATCATGATAAACAATTTGTCTGTTAACAATTGTTTTATATCTTTTACAGAAAATGAGATATAAGGGTTCCAAGTGGCGGCGCGTCACCTCCGAGGGTGGGCGCCACCCTATACCCAAACACTTTGAGCTTGATTATCTCGGTTTCTATGAGAGATATCAAAAATTTGTCAACTGATAACATGTTTGTTATTTTATGACAAACAATTTATTAGTTGACACTTTTTGAATATCTTTTACAGTTATCGAGAAAAAATGAATCGAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>408 377 123 92</canonical_bands>
                <polymorphic_bands>531 377 92</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>275 241 137 103 75 63 48 30 16 12</canonical_bands>
                <polymorphic_bands>323 241 137 103 75 63 30 16 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATATGAGAACAAAGGGTGTTAG</pcr_primer_p1>
		<pcr_primer_p2>CATTTTAATGGGAAAAATACAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CATATGAGAACAAAGGGTGTTAGCAATTAGGTATACTTCTTTTCGATATGGGAACCAGATGGATCGGTTCTGGCACAGATAGCCTTTCGAGCGACAGATCTGAAAAGTATGAGGTGCTGAAAGTCGTGAAAAAAGTACAAGTTTTGAAAACAGAAGCTTCATTCTATAGTTCAAAAAAATTCCGGTCTTCTTTAAAATTTCCAGGCTCTCGCTCAAAAATTTTTTTTGTATTTTTCCCATTAAAATG</canonical_amplicon>
		<polymorphic_amplicon>CATATGAGAACAAAGGGTGTTAGCAATTAGGTATACTTCTTTTCGATATGGGAACCAGATGGATCGGTTCTGGCACAGATAGCCTTTCGAGCGACAGATCTGAAAAGTATGAGGTGCTGAAAGTCGTGAAAAAAGTACAAGTTTTGAAAACAGAAGCTTCATTCTATAGTTCAAAAAAATTCCGGTCTTCTTYAAAATTTCCAGGCTCTCGCTCAAAAATTTTTTTTGTATTTTTCCCATTAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4225</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>17801</contig_pos>
        <strand>+</strand>
        <context>AAATTCCGGT[C/T]TTCTTYAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAAGTTTTGAAAACAGAAGCTTCATTCTATAGTTCAAAAAAATTCCGGT</left_flank>
        <right_flank>TTCTTTAAAATTTCCAGGCTCTCGCTCAAAAATTTTTTTTGTATTTTTCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTTATCGACAACTTTAGTTGTTGAGCCCCCACCCCCTTGTATTTGTACTTACGGTGTAAAAATACAGAAAGAAAAAGATTAAAAAAAAGCATTTTTAAAGAAAAATGAAAATTTATACAATTCGTTAAACTTCATTCAACAATTCGGCTTTCGGCGCGAGTTCGGTCAACAATGACAACATCATTGCAGTCGCTGAGAGTGTCTGAAAATGAATTAGACGTTTTAGATTAACTAGAATGACTCACTCCCAAAATAAGAGGTCTCGATAAAAGGGCGAAACCCCAAACAGAGACGCCCAAATCGAATTGTTCCATATGAGAACAAAGGGTGTTAGCAATTAGGTATACTTCTTTTCGATATGGGAACCAGATGGATCGGTTCTGGCACAGATAGCCTTTCGAGCGACAGATCTGAAAAGTATGAGGTGCTGAAAGTCGTGAAAAAAGTACAAGTTTTGAAAACAGAAGCTTCATTCTATAGTTCAAAAAAATTCCGGTCTTCTTTAAAATTTCCAGGCTCTCGCTCAAAAATTTTTTTTGTATTTTTCCCATTAAAATGTTCTTTATTTATGTACTACTCTGATCTAATTTCAATTCGAGAGTGGGCAGACTCCTTAAAGGCGCATTTAAAAACGCAAACCCTGTAATAAAAGGACCCTCCACACTGTCAAGTTTCAGCTCAATTATTTCGGCTCCTATAAGAGATATCAAAAATTAGTTCACTGATGAAATGTTTGTGAGATCATGATAAACAATTTGTCTGTTAACAATTGTTTTATATCTTTTACAGAAAATGAGATATAAGGGTTCCAAGTGGCGGCGCGTCACCTCCGAGGGTGGGCGCCACCCTATACCCAAACACTTTGAGCTTGATTATCTCGGTTTCTATGAGAGATATCAAAAATTTGTCAACTGATAACATGTTTGTTATTTTATGACAAACAATTTATTAGTTGACACTTTTTGAATATCTTTTACAGTTATCGAGAAAAAATGAAT</canonical>
            <polymorphic>AACTTATCGACAACTTTAGTTGTTGAGCCCCCACCCCCTTGTATTTGTACTTACGGTGTAAAAATACAGAAAGAAAAAGATTAAAAAAAAGCATTTTTAAAGAAAAATGAAAATTTATACAATTCGTTAAACTTCATTCAACAATTCGGCTTTCGGCGCGAGTTCGGTCAACAATGACAACATCATTGCAGTCGCTGAGAGTGTCTGAAAATGAATTAGACGTTTTAGATTAACTAGAATGACTCACTCCCAAAATAAGAGGTCTCGATAAAAGGGCGAAACCCCAAACAGAGACGCCCAAATCGAATTGTTCCATATGAGAACAAAGGGTGTTAGCAATTAGGTATACTTCTTTTCGATATGGGAACCAGATGGATCGGTTCTGGCACAGATAGCCTTTCGAGCGACAGATCTGAAAAGTATGAGGTGCTGAAAGTCGTGAAAAAAGTACAAGTTTTGAAAACAGAAGCTTCATTCTATAGTTCAAAAAAATTCCGGTYTTCTTTAAAATTTCCAGGCTCTCGCTCAAAAATTTTTTTTGTATTTTTCCCATTAAAATGTTCTTTATTTATGTACTACTCTGATCTAATTTCAATTCGAGAGTGGGCAGACTCCTTAAAGGCGCATTTAAAAACGCAAACCCTGTAATAAAAGGACCCTCCACACTGTCAAGTTTCAGCTCAATTATTTCGGCTCCTATAAGAGATATCAAAAATTAGTTCACTGATGAAATGTTTGTGAGATCATGATAAACAATTTGTCTGTTAACAATTGTTTTATATCTTTTACAGAAAATGAGATATAAGGGTTCCAAGTGGCGGCGCGTCACCTCCGAGGGTGGGCGCCACCCTATACCCAAACACTTTGAGCTTGATTATCTCGGTTTCTATGAGAGATATCAAAAATTTGTCAACTGATAACATGTTTGTTATTTTATGACAAACAATTTATTAGTTGACACTTTTTGAATATCTTTTACAGTTATCGAGAAAAAATGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATATGAGAACAAAGGGTGTTAG</pcr_primer_p1>
		<pcr_primer_p2>CATTTTAATGGGAAAAATACAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CATATGAGAACAAAGGGTGTTAGCAATTAGGTATACTTCTTTTCGATATGGGAACCAGATGGATCGGTTCTGGCACAGATAGCCTTTCGAGCGACAGATCTGAAAAGTATGAGGTGCTGAAAGTCGTGAAAAAAGTACAAGTTTTGAAAACAGAAGCTTCATTCTATAGTTCAAAAAAATTCCGGTCTTCTTTAAAATTTCCAGGCTCTCGCTCAAAAATTTTTTTTGTATTTTTCCCATTAAAATG</canonical_amplicon>
		<polymorphic_amplicon>CATATGAGAACAAAGGGTGTTAGCAATTAGGTATACTTCTTTTCGATATGGGAACCAGATGGATCGGTTCTGGCACAGATAGCCTTTCGAGCGACAGATCTGAAAAGTATGAGGTGCTGAAAGTCGTGAAAAAAGTACAAGTTTTGAAAACAGAAGCTTCATTCTATAGTTCAAAAAAATTCCGGTYTTCTTTAAAATTTCCAGGCTCTCGCTCAAAAATTTTTTTTGTATTTTTCCCATTAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4226</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>17702</contig_pos>
        <strand>+</strand>
        <context>GATAGCCTTT[C/T]GAGCGACAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTTTCGATATGGGAACCAGATGGATCGGTTCTGGCACAGATAGCCTTT</left_flank>
        <right_flank>GAGCGACAGATCTGAAAAGTATGAGGTGCTGAAAGTCGTGAAAAAAGTAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGGACGTGAAAGCTTTGACCGCTTCTGAATTCGCCGTCTCCGTTTAAGATCTTCATTTTGGTTTCTTTTTTTTTAATCATTGAGTCTCTCCGTTTAGTAACTTATCGACAACTTTAGTTGTTGAGCCCCCACCCCCTTGTATTTGTACTTACGGTGTAAAAATACAGAAAGAAAAAGATTAAAAAAAAGCATTTTTAAAGAAAAATGAAAATTTATACAATTCGTTAAACTTCATTCAACAATTCGGCTTTCGGCGCGAGTTCGGTCAACAATGACAACATCATTGCAGTCGCTGAGAGTGTCTGAAAATGAATTAGACGTTTTAGATTAACTAGAATGACTCACTCCCAAAATAAGAGGTCTCGATAAAAGGGCGAAACCCCAAACAGAGACGCCCAAATCGAATTGTTCCATATGAGAACAAAGGGTGTTAGCAATTAGGTATACTTCTTTTCGATATGGGAACCAGATGGATCGGTTCTGGCACAGATAGCCTTTCGAGCGACAGATCTGAAAAGTATGAGGTGCTGAAAGTCGTGAAAAAAGTACAAGTTTTGAAAACAGAAGCTTCATTCTATAGTTCAAAAAAATTCCGGTCTTCTTTAAAATTTCCAGGCTCTCGCTCAAAAATTTTTTTTGTATTTTTCCCATTAAAATGTTCTTTATTTATGTACTACTCTGATCTAATTTCAATTCGAGAGTGGGCAGACTCCTTAAAGGCGCATTTAAAAACGCAAACCCTGTAATAAAAGGACCCTCCACACTGTCAAGTTTCAGCTCAATTATTTCGGCTCCTATAAGAGATATCAAAAATTAGTTCACTGATGAAATGTTTGTGAGATCATGATAAACAATTTGTCTGTTAACAATTGTTTTATATCTTTTACAGAAAATGAGATATAAGGGTTCCAAGTGGCGGCGCGTCACCTCCGAGGGTGGGCGCCACCCTATACCCAAACACTTTGAGCTTGATTATCTCGGTTTCTATGAGAGATATCA</canonical>
            <polymorphic>AAGGACGTGAAAGCTTTGACCGCTTCTGAATTCGCCGTCTCCGTTTAAGATCTTCATTTTGGTTTCTTTTTTTTTAATCATTGAGTCTCTCCGTTTAGTAACTTATCGACAACTTTAGTTGTTGAGCCCCCACCCCCTTGTATTTGTACTTACGGTGTAAAAATACAGAAAGAAAAAGATTAAAAAAAAGCATTTTTAAAGAAAAATGAAAATTTATACAATTCGTTAAACTTCATTCAACAATTCGGCTTTCGGCGCGAGTTCGGTCAACAATGACAACATCATTGCAGTCGCTGAGAGTGTCTGAAAATGAATTAGACGTTTTAGATTAACTAGAATGACTCACTCCCAAAATAAGAGGTCTCGATAAAAGGGCGAAACCCCAAACAGAGACGCCCAAATCGAATTGTTCCATATGAGAACAAAGGGTGTTAGCAATTAGGTATACTTCTTTTCGATATGGGAACCAGATGGATCGGTTCTGGCACAGATAGCCTTTYGAGCGACAGATCTGAAAAGTATGAGGTGCTGAAAGTCGTGAAAAAAGTACAAGTTTTGAAAACAGAAGCTTCATTCTATAGTTCAAAAAAATTCCGGTCTTCTTTAAAATTTCCAGGCTCTCGCTCAAAAATTTTTTTTGTATTTTTCCCATTAAAATGTTCTTTATTTATGTACTACTCTGATCTAATTTCAATTCGAGAGTGGGCAGACTCCTTAAAGGCGCATTTAAAAACGCAAACCCTGTAATAAAAGGACCCTCCACACTGTCAAGTTTCAGCTCAATTATTTCGGCTCCTATAAGAGATATCAAAAATTAGTTCACTGATGAAATGTTTGTGAGATCATGATAAACAATTTGTCTGTTAACAATTGTTTTATATCTTTTACAGAAAATGAGATATAAGGGTTCCAAGTGGCGGCGCGTCACCTCCGAGGGTGGGCGCCACCCTATACCCAAACACTTTGAGCTTGATTATCTCGGTTTCTATGAGAGATATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>303 258 197 107 53 44 38</canonical_bands>
                <polymorphic_bands>303 258 241 107 53 38</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATATGAGAACAAAGGGTGTTAG</pcr_primer_p1>
		<pcr_primer_p2>CATTTTAATGGGAAAAATACAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CATATGAGAACAAAGGGTGTTAGCAATTAGGTATACTTCTTTTCGATATGGGAACCAGATGGATCGGTTCTGGCACAGATAGCCTTTCGAGCGACAGATCTGAAAAGTATGAGGTGCTGAAAGTCGTGAAAAAAGTACAAGTTTTGAAAACAGAAGCTTCATTCTATAGTTCAAAAAAATTCCGGTCTTCTTTAAAATTTCCAGGCTCTCGCTCAAAAATTTTTTTTGTATTTTTCCCATTAAAATG</canonical_amplicon>
		<polymorphic_amplicon>CATATGAGAACAAAGGGTGTTAGCAATTAGGTATACTTCTTTTCGATATGGGAACCAGATGGATCGGTTCTGGCACAGATAGCCTTTYGAGCGACAGATCTGAAAAGTATGAGGTGCTGAAAGTCGTGAAAAAAGTACAAGTTTTGAAAACAGAAGCTTCATTCTATAGTTCAAAAAAATTCCGGTCTTCTTTAAAATTTCCAGGCTCTCGCTCAAAAATTTTTTTTGTATTTTTCCCATTAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4227</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>17419</contig_pos>
        <strand>+</strand>
        <context>TGAAAATTTA[A/T]ACAATTCGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAAAGAAAAAGATTAAAAAAAAGCATTTTTAAAGAAAAATGAAAATTTA</left_flank>
        <right_flank>ACAATTCGTTAAACTTCATTCAACAATTCGGCTTTCGGCGCGAGTTCGGT</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTTGAAAATCTGACTTTCAGATCTTCGCCGATTTCGACCACCTTCGCGCCAGACGTGACGTTGTTGAAGCTTCAGGAGAAGGATCCGGAGAATCATCTGGAGAGAAAATCGTAGAATCTTCCGGAGAAGGATCCGGGGAATCTTCTGGAGACAAGATCGTTGAGGCTTCTGGAGAGGGAAGTGGAGAAGGATCGGGAGCCTCTGATGCTGTTCTCGAATCATCTGGAGAAGGATCCGGAGAAAACTTGAGCAATGGAATCGTTGCTTCCGATGCCCCAAAGGACGTGAAAGCTTTGACCGCTTCTGAATTCGCCGTCTCCGTTTAAGATCTTCATTTTGGTTTCTTTTTTTTTAATCATTGAGTCTCTCCGTTTAGTAACTTATCGACAACTTTAGTTGTTGAGCCCCCACCCCCTTGTATTTGTACTTACGGTGTAAAAATACAGAAAGAAAAAGATTAAAAAAAAGCATTTTTAAAGAAAAATGAAAATTTATACAATTCGTTAAACTTCATTCAACAATTCGGCTTTCGGCGCGAGTTCGGTCAACAATGACAACATCATTGCAGTCGCTGAGAGTGTCTGAAAATGAATTAGACGTTTTAGATTAACTAGAATGACTCACTCCCAAAATAAGAGGTCTCGATAAAAGGGCGAAACCCCAAACAGAGACGCCCAAATCGAATTGTTCCATATGAGAACAAAGGGTGTTAGCAATTAGGTATACTTCTTTTCGATATGGGAACCAGATGGATCGGTTCTGGCACAGATAGCCTTTCGAGCGACAGATCTGAAAAGTATGAGGTGCTGAAAGTCGTGAAAAAAGTACAAGTTTTGAAAACAGAAGCTTCATTCTATAGTTCAAAAAAATTCCGGTCTTCTTTAAAATTTCCAGGCTCTCGCTCAAAAATTTTTTTTGTATTTTTCCCATTAAAATGTTCTTTATTTATGTACTACTCTGATCTAATTTCAATTCGAGAGTGGGCAGACTCCTTA</canonical>
            <polymorphic>TTTTTTTTGAAAATCTGACTTTCAGATCTTCGCCGATTTCGACCACCTTCGCGCCAGACGTGACGTTGTTGAAGCTTCAGGAGAAGGATCCGGAGAATCATCTGGAGAGAAAATCGTAGAATCTTCCGGAGAAGGATCCGGGGAATCTTCTGGAGACAAGATCGTTGAGGCTTCTGGAGAGGGAAGTGGAGAAGGATCGGGAGCCTCTGATGCTGTTCTCGAATCATCTGGAGAAGGATCCGGAGAAAACTTGAGCAATGGAATCGTTGCTTCCGATGCCCCAAAGGACGTGAAAGCTTTGACCGCTTCTGAATTCGCCGTCTCCGTTTAAGATCTTCATTTTGGTTTCTTTTTTTTTAATCATTGAGTCTCTCCGTTTAGTAACTTATCGACAACTTTAGTTGTTGAGCCCCCACCCCCTTGTATTTGTACTTACGGTGTAAAAATACAGAAAGAAAAAGATTAAAAAAAAGCATTTTTAAAGAAAAATGAAAATTTAWACAATTCGTTAAACTTCATTCAACAATTCGGCTTTCGGCGCGAGTTCGGTCAACAATGACAACATCATTGCAGTCGCTGAGAGTGTCTGAAAATGAATTAGACGTTTTAGATTAACTAGAATGACTCACTCCCAAAATAAGAGGTCTCGATAAAAGGGCGAAACCCCAAACAGAGACGCCCAAATCGAATTGTTCCATATGAGAACAAAGGGTGTTAGCAATTAGGTATACTTCTTTTCGATATGGGAACCAGATGGATCGGTTCTGGCACAGATAGCCTTTCGAGCGACAGATCTGAAAAGTATGAGGTGCTGAAAGTCGTGAAAAAAGTACAAGTTTTGAAAACAGAAGCTTCATTCTATAGTTCAAAAAAATTCCGGTCTTCTTTAAAATTTCCAGGCTCTCGCTCAAAAATTTTTTTTGTATTTTTCCCATTAAAATGTTCTTTATTTATGTACTACTCTGATCTAATTTCAATTCGAGAGTGGGCAGACTCCTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTGAGTCTCTCCGTTTAGTA</pcr_primer_p1>
		<pcr_primer_p2>AAAACGTCTAATTCATTTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCATTGAGTCTCTCCGTTTAGTAACTTATCGACAACTTTAGTTGTTGAGCCCCCACCCCCTTGTATTTGTACTTACGGTGTAAAAATACAGAAAGAAAAAGATTAAAAAAAAGCATTTTTAAAGAAAAATGAAAATTTATACAATTCGTTAAACTTCATTCAACAATTCGGCTTTCGGCGCGAGTTCGGTCAACAATGACAACATCATTGCAGTCGCTGAGAGTGTCTGAAAATGAATTAGACGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TCATTGAGTCTCTCCGTTTAGTAACTTATCGACAACTTTAGTTGTTGAGCCCCCACCCCCTTGTATTTGTACTTACGGTGTAAAAATACAGAAAGAAAAAGATTAAAAAAAAGCATTTTTAAAGAAAAATGAAAATTTAWACAATTCGTTAAACTTCATTCAACAATTCGGCTTTCGGCGCGAGTTCGGTCAACAATGACAACATCATTGCAGTCGCTGAGAGTGTCTGAAAATGAATTAGACGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4239</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>89484</contig_pos>
        <strand></strand>
        <context>TAATTTATCT[C/G]AAACTGAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACGCTCTAATAAAAAACCTAAACTGTCATCTTTGAGCACCTAATTTATCT</left_flank>
        <right_flank>AAACTGAATAGTGGGAGGCCCTTATATCAAGTTTTACTGTACTTCAGCAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTGAGCATTCAGTTTTTTGATTTGTTCTGAGAAATTGATAATTTTTAGAGTAAAAATCATTTCTTTTCAGCTTTACTGAAAGTTTTCCAACTTTTGATCCAAAAAGCGCACCCTTTTTCACATTTATTTGTTTTTACAGTTTATTTTTTCCAATCTAAAAATACTGTATTTTGAAAAATTGAGAAATTTTAATGTTTTGCTTAACATTAAACAAACTTGTTAGTTTTTCCACTTACCGTAATACCTGTAATAAATGGGCCCCCTAACTTTCAACTTGGAGCCAGTTTATCTTGGTTACTGTAAGAGATATCAAAAATATGTCAACTGATAAATTCTTTATCATAATATCAAAAAATTTTTGTCAGTCGACACATTTTTGTTATCTTTCACAGAAATTAAGATAATTTAGCTTAAAATGCAAGTATGTAGGATGGCGCATAACCGTAAACGCTCTAATAAAAAACCTAAACTGTCATCTTTGAGCACCTAATTTATCTCAAACTGAATAGTGGGAGGCCCTTATATCAAGTTTTACTGTACTTCAGCAAGTTTTAAGTTTCCCTAACACCCTAAATTTCTTTAAATTGAGCATTTTTGAATTTTTGAATAGCTCAAAATTCAAAAAACACCTCGCATTTAAAATAAAACTGCTTTCTAGATTCCATCCGATGGTGACACCAGGCAATCGCACATGCTGTCTCACAATCAGAATTCAGGTAACTATTAGACATTTTTGTTCCTAAAACCTGTAAATTAACTATATTGGTCCCAAAACGAAAACTACCGTATCCTAAAGAAAATTTCATTTTCCGGATTCATTTTCTCGAGTTCCACACATTTTCAGTCAATTTTTTGCAATCAAAATATTTAACTTTCCGACTTTTTTGGGATTAAAAAAAATACTGAAAATAACAAATATTTTTAGGTTACGGTAGTTGTCCCTGTGGGACCTTTGGCCACGGCCATTGCTCCGATTTTGTACTAGTGTAATACTTAAC</canonical>
            <polymorphic>GATTGAGCATTCAGTTTTTTGATTTGTTCTGAGAAATTGATAATTTTTAGAGTAAAAATCATTTCTTTTCAGCTTTACTGAAAGTTTTCCAACTTTTGATCCAAAAAGCGCACCCTTTTTCACATTTATTTGTTTTTACAGTTTATTTTTTCCAATCTAAAAATACTGTATTTTGAAAAATTGAGAAATTTTAATGTTTTGCTTAACATTAAACAAACTTGTTAGTTTTTCCACTTACCGTAATACCTGTAATAAATGGGCCCCCTAACTTTCAACTTGGAGCCAGTTTATCTTGGTTACTGTAAGAGATATCAAAAATATGTCAACTGATAAATTCTTTATCATAATATCAAAAAATTTTTGTCAGTCGACACATTTTTGTTATCTTTCACAGAAATTAAGATAATTTAGCTTAAAATGCAAGTATGTAGGATGGCGCATAACCGTAAACGCTCTAATAAAAAACCTAAACTGTCATCTTTGAGCACCTAATTTATCTSAAACTGAATAGTGGGAGGCCCTTATATCAAGTTTTACTGTACTTCAGCAAGTTTTAAGTTTCCCTAACACCCTAAATTTCTTTAAATTGAGCATTTTTGAATTTTTGAATAGCTCAAAATTCAAAAAACACCTCGCATTTAAAATAAAACTGCTTTCTAGATTCCATCCGATGGTGACACCAGGCAATCGCACATGCTGTCTCACAATCAGAATTCAGGTAACTATTAGACATTTTTGTTCCTAAAACCTGTAAATTAACTATATTGGTCCCAAAACGAAAACTACCGTATCCTAAAGAAAATTTCATTTTCCGGATTCATTTTCTCGAGTTCCACACATTTTCAGTCAATTTTTTGCAATCAAAATATTTAACTTTCCGACTTTTTTGGGATTAAAAAAAATACTGAAAATAACAAATATTTTTAGGTTACGGTAGTTGTCCCTGTGGGACCTTTGGCCACGGCCATTGCTCCGATTTTGTACTAGTGTAATACTTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTATGTAGGATGGCGCATA</pcr_primer_p1>
		<pcr_primer_p2>ATGGAATCTAGAAAGCAGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGTATGTAGGATGGCGCATAACCGTAAACGCTCTAATAAAAAACCTAAACTGTCATCTTTGAGCACCTAATTTATCTCAAACTGAATAGTGGGAGGCCCTTATATCAAGTTTTACTGTACTTCAGCAAGTTTTAAGTTTCCCTAACACCCTAAATTTCTTTAAATTGAGCATTTTTGAATTTTTGAATAGCTCAAAATTCAAAAAACACCTCGCATTTAAAATAAAACTGCTTTCTAGATTCCAT</canonical_amplicon>
		<polymorphic_amplicon>AGTATGTAGGATGGCGCATAACCGTAAACGCTCTAATAAAAAACCTAAACTGTCATCTTTGAGCACCTAATTTATCTSAAACTGAATAGTGGGAGGCCCTTATATCAAGTTTTACTGTACTTCAGCAAGTTTTAAGTTTCCCTAACACCCTAAATTTCTTTAAATTGAGCATTTTTGAATTTTTGAATAGCTCAAAATTCAAAAAACACCTCGCATTTAAAATAAAACTGCTTTCTAGATTCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4240</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>89703</contig_pos>
        <strand></strand>
        <context>CAGAATTCAG[G/T]TAACTATTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGATGGTGACACCAGGCAATCGCACATGCTGTCTCACAATCAGAATTCAG</left_flank>
        <right_flank>TAACTATTAGACATTTTTGTTCCTAAAACCTGTAAATTAACTATATTGGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTAGTTTTTCCACTTACCGTAATACCTGTAATAAATGGGCCCCCTAACTTTCAACTTGGAGCCAGTTTATCTTGGTTACTGTAAGAGATATCAAAAATATGTCAACTGATAAATTCTTTATCATAATATCAAAAAATTTTTGTCAGTCGACACATTTTTGTTATCTTTCACAGAAATTAAGATAATTTAGCTTAAAATGCAAGTATGTAGGATGGCGCATAACCGTAAACGCTCTAATAAAAAACCTAAACTGTCATCTTTGAGCACCTAATTTATCTCAAACTGAATAGTGGGAGGCCCTTATATCAAGTTTTACTGTACTTCAGCAAGTTTTAAGTTTCCCTAACACCCTAAATTTCTTTAAATTGAGCATTTTTGAATTTTTGAATAGCTCAAAATTCAAAAAACACCTCGCATTTAAAATAAAACTGCTTTCTAGATTCCATCCGATGGTGACACCAGGCAATCGCACATGCTGTCTCACAATCAGAATTCAGGTAACTATTAGACATTTTTGTTCCTAAAACCTGTAAATTAACTATATTGGTCCCAAAACGAAAACTACCGTATCCTAAAGAAAATTTCATTTTCCGGATTCATTTTCTCGAGTTCCACACATTTTCAGTCAATTTTTTGCAATCAAAATATTTAACTTTCCGACTTTTTTGGGATTAAAAAAAATACTGAAAATAACAAATATTTTTAGGTTACGGTAGTTGTCCCTGTGGGACCTTTGGCCACGGCCATTGCTCCGATTTTGTACTAGTGTAATACTTAACCTTCATTTGCAAATTCGTCTAATCGTATGCTATCCAATTCAAATCCTAAAAAACGCTTTTAAAAGTTGCAAACTTCTATTTACATTTTGAGTCACCGTGTCTTCCTCAAATGGCATCATCATCATTTTCTGCCATTATAAAAGACATGGTCTACTGACCATACAGATGTTTCGTTGGCTTCTTGCTTCCTCGAAACATTGCAAAAATAGTTTTCAATCC</canonical>
            <polymorphic>TGTTAGTTTTTCCACTTACCGTAATACCTGTAATAAATGGGCCCCCTAACTTTCAACTTGGAGCCAGTTTATCTTGGTTACTGTAAGAGATATCAAAAATATGTCAACTGATAAATTCTTTATCATAATATCAAAAAATTTTTGTCAGTCGACACATTTTTGTTATCTTTCACAGAAATTAAGATAATTTAGCTTAAAATGCAAGTATGTAGGATGGCGCATAACCGTAAACGCTCTAATAAAAAACCTAAACTGTCATCTTTGAGCACCTAATTTATCTCAAACTGAATAGTGGGAGGCCCTTATATCAAGTTTTACTGTACTTCAGCAAGTTTTAAGTTTCCCTAACACCCTAAATTTCTTTAAATTGAGCATTTTTGAATTTTTGAATAGCTCAAAATTCAAAAAACACCTCGCATTTAAAATAAAACTGCTTTCTAGATTCCATCCGATGGTGACACCAGGCAATCGCACATGCTGTCTCACAATCAGAATTCAGKTAACTATTAGACATTTTTGTTCCTAAAACCTGTAAATTAACTATATTGGTCCCAAAACGAAAACTACCGTATCCTAAAGAAAATTTCATTTTCCGGATTCATTTTCTCGAGTTCCACACATTTTCAGTCAATTTTTTGCAATCAAAATATTTAACTTTCCGACTTTTTTGGGATTAAAAAAAATACTGAAAATAACAAATATTTTTAGGTTACGGTAGTTGTCCCTGTGGGACCTTTGGCCACGGCCATTGCTCCGATTTTGTACTAGTGTAATACTTAACCTTCATTTGCAAATTCGTCTAATCGTATGCTATCCAATTCAAATCCTAAAAAACGCTTTTAAAAGTTGCAAACTTCTATTTACATTTTGAGTCACCGTGTCTTCCTCAAATGGCATCATCATCATTTTCTGCCATTATAAAAGACATGGTCTACTGACCATACAGATGTTTCGTTGGCTTCTTGCTTCCTCGAAACATTGCAAAAATAGTTTTCAATCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>378 209 163 129 76 45</canonical_bands>
                <polymorphic_bands>378 254 163 129 76</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCATTTAAAATAAAACTGCTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTGCAAATGAAGGTTAAGTATT</pcr_primer_p2>
		<pcr_amplicon_size>379</pcr_amplicon_size>
		<canonical_amplicon>GCATTTAAAATAAAACTGCTTTCTAGATTCCATCCGATGGTGACACCAGGCAATCGCACATGCTGTCTCACAATCAGAATTCAGGTAACTATTAGACATTTTTGTTCCTAAAACCTGTAAATTAACTATATTGGTCCCAAAACGAAAACTACCGTATCCTAAAGAAAATTTCATTTTCCGGATTCATTTTCTCGAGTTCCACACATTTTCAGTCAATTTTTTGCAATCAAAATATTTAACTTTCCGACTTTTTTGGGATTAAAAAAAATACTGAAAATAACAAATATTTTTAGGTTACGGTAGTTGTCCCTGTGGGACCTTTGGCCACGGCCATTGCTCCGATTTTGTACTAGTGTAATACTTAACCTTCATTTGCAAA</canonical_amplicon>
		<polymorphic_amplicon>GCATTTAAAATAAAACTGCTTTCTAGATTCCATCCGATGGTGACACCAGGCAATCGCACATGCTGTCTCACAATCAGAATTCAGKTAACTATTAGACATTTTTGTTCCTAAAACCTGTAAATTAACTATATTGGTCCCAAAACGAAAACTACCGTATCCTAAAGAAAATTTCATTTTCCGGATTCATTTTCTCGAGTTCCACACATTTTCAGTCAATTTTTTGCAATCAAAATATTTAACTTTCCGACTTTTTTGGGATTAAAAAAAATACTGAAAATAACAAATATTTTTAGGTTACGGTAGTTGTCCCTGTGGGACCTTTGGCCACGGCCATTGCTCCGATTTTGTACTAGTGTAATACTTAACCTTCATTTGCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4241</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>93139</contig_pos>
        <strand></strand>
        <context>TCCTAAATTC[C/T]AGACTCTGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGGGTAATGTTTTTTTTACTGAATGTTCTATTTTGAAATCCTAAATTC</left_flank>
        <right_flank>AGACTCTGTTCCCAGGATAAAATGTTCTATCTGCCAGACTGGAAGCAGTG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCTACCAATTTTCGAGGTTCCAAGACACTTATGTCCAAAGATATATTCATTTTTACCGGTCCGGGCAATTGTGCGCCACTACAGTAATTCTCTAATCCTTCAGGCGCTTGATGTTTGAACATAAGTCCAAATTGCCTAAACTTTCCCACCTTCCGCACTTTTTGGATCATCAAACAATTTTTTGCAGACAGAAAAAGGGTTTGGTGGATGCCAGACTTATTGAAGACACTTCCGCCGTTTGCAGAAGGATATCGGATAGAAAATGTAAGATTCTTTTCTCGTTCTTGCAAAAAAATTTTTTTATTTCAGTTTGTTCCAAAATACAAAATTTCGGGGTGCACTATAAACGGAAATTTCCCGGAAATGAGCACTGCCATCTTTTGTTACATTCACAATTCGACACTATTCACAGCGGCCAATAAGACCATTTCTCAGGATTTAGTCGAGAATGGGTAATGTTTTTTTTACTGAATGTTCTATTTTGAAATCCTAAATTCCAGACTCTGTTCCCAGGATAAAATGTTCTATCTGCCAGACTGGAAGCAGTGGAAGAAATACATAACAAATAAAATTCGAAGAGTTGCATTTGTCCAACATCCTCTGGAACGATTCGCACGATCTTTTATGAGGCATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTA</canonical>
            <polymorphic>TATCTACCAATTTTCGAGGTTCCAAGACACTTATGTCCAAAGATATATTCATTTTTACCGGTCCGGGCAATTGTGCGCCACTACAGTAATTCTCTAATCCTTCAGGCGCTTGATGTTTGAACATAAGTCCAAATTGCCTAAACTTTCCCACCTTCCGCACTTTTTGGATCATCAAACAATTTTTTGCAGACAGAAAAAGGGTTTGGTGGATGCCAGACTTATTGAAGACACTTCCGCCGTTTGCAGAAGGATATCGGATAGAAAATGTAAGATTCTTTTCTCGTTCTTGCAAAAAAATTTTTTTATTTCAGTTTGTTCCAAAATACAAAATTTCGGGGTGCACTATAAACGGAAATTTCCCGGAAATGAGCACTGCCATCTTTTGTTACATTCACAATTCGACACTATTCACAGCGGCCAATAAGACCATTTCTCAGGATTTAGTCGAGAATGGGTAATGTTTTTTTTACTGAATGTTCTATTTTGAAATCCTAAATTCYAGACTCTGTTCCCAGGATAAAATGTTCTATCTGCCAGACTGGAAGCAGTGGAAGAAATACATAACAAATAAAATTCGAAGAGTTGCATTTGTCCAACATCCTCTGGAACGATTCGCACGATCTTTTATGAGGCATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAGNNNCTG</site>
                <isoschizomers>
                    <enzyme>AlwNI</enzyme>
                    <enzyme>CaiI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAAGACCATTTCTCAGGATTT</pcr_primer_p1>
		<pcr_primer_p2>GCATAATACTTACCGTTGACAAT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>AATAAGACCATTTCTCAGGATTTAGTCGAGAATGGGTAATGTTTTTTTTACTGAATGTTCTATTTTGAAATCCTAAATTCCAGACTCTGTTCCCAGGATAAAATGTTCTATCTGCCAGACTGGAAGCAGTGGAAGAAATACATAACAAATAAAATTCGAAGAGTTGCATTTGTCCAACATCCTCTGGAACGATTCGCACGATCTTTTATGAGGCATTGTCAACGGTAAGTATTATGC</canonical_amplicon>
		<polymorphic_amplicon>AATAAGACCATTTCTCAGGATTTAGTCGAGAATGGGTAATGTTTTTTTTACTGAATGTTCTATTTTGAAATCCTAAATTCYAGACTCTGTTCCCAGGATAAAATGTTCTATCTGCCAGACTGGAAGCAGTGGAAGAAATACATAACAAATAAAATTCGAAGAGTTGCATTTGTCCAACATCCTCTGGAACGATTCGCACGATCTTTTATGAGGCATTGTCAACGGTAAGTATTATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4242</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>108735</contig_pos>
        <strand>+</strand>
        <context>ACTGCCAGAA[A/G]TCATGTGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCACCAACTCATTCTACAAGTGCGCCGATCGCATCAAGTACTGCCAGAA</left_flank>
        <right_flank>TCATGTGATTTGTGTACACCTGGATCCTGCAAAGATTCTGATAGTGTTCT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAAATGACAACAAAAAAACGCAAAATTTCAAAGTTGATATCAGTTTTTCCCCCCTCGAACCAATGATTTTTCGAACGATATTTCTTCTCATTGCCGTTTCCCTCGTACCATCCTTCCAAGAGGGTACCTCTACTGTAACTACCGATAGTACAACTTCTGGACCATCGACGACTTCTGGTCCGACATCATCTACCGGTGCACCGTGCCAAGATGATCCGAATACAGATTGTACAAATTTCAAAAGCTACTGTACCAACTCTAAATACATTCCAATGTTGAAACAGTTCTGTCCAGTGACCTGTAACATGTGTCCAGGAGCCACAACTGCAGTACCACCAACTGCCAATCCAAATTGCCATGATTCTAGCACTAAGTAAGTTCTTAAAGAAATTTTTAGAAATAATGGAGGCCTTTTTCAGTTGCCCCAATTGGGTTAAAAATGGATTCTGCACCAACTCATTCTACAAGTGCGCCGATCGCATCAAGTACTGCCAGAAATCATGTGATTTGTGTACACCTGGATCCTGCAAAGATTCTGATAGTGTTCTTATTGAGGTTAATGGAGAACCAGATTTCGATTTTCATGTTTCTGAGTAAATAAATTGATGATTATAATGGGATCATTCAGTGAAAAGCAAATCAGAAAATTGCTGATTTTTTCTTATGCAGAGGGGTCCCCAATTTCTTTTTCTTCTACATACATATCTTCATTCTGTTTTGTTCACCTTCTCAATTTCACAACACCATTTTGAAGCTCGTTTTGTCCTGAGATTAAAAACGAACTCAGATTTCACTTCGCTCCACCCATTTTGATATATCCGACGCGTTGCGGTCGTGCGTTGCGTTTTTTAGATCCTCTGTCAGAACGTACTTCTGGGACATTGTTTTCACATGGACATCCCTTTTGGCTACATCTAAAACTGTTAGCTACCGTACCCTTACTCAAACTCTGTCCTCATGGCATTCATTCTCTTTTCTTCTTCTTTTTGATGTGGGAT</canonical>
            <polymorphic>TATAAATGACAACAAAAAAACGCAAAATTTCAAAGTTGATATCAGTTTTTCCCCCCTCGAACCAATGATTTTTCGAACGATATTTCTTCTCATTGCCGTTTCCCTCGTACCATCCTTCCAAGAGGGTACCTCTACTGTAACTACCGATAGTACAACTTCTGGACCATCGACGACTTCTGGTCCGACATCATCTACCGGTGCACCGTGCCAAGATGATCCGAATACAGATTGTACAAATTTCAAAAGCTACTGTACCAACTCTAAATACATTCCAATGTTGAAACAGTTCTGTCCAGTGACCTGTAACATGTGTCCAGGAGCCACAACTGCAGTACCACCAACTGCCAATCCAAATTGCCATGATTCTAGCACTAAGTAAGTTCTTAAAGAAATTTTTAGAAATAATGGAGGCCTTTTTCAGTTGCCCCAATTGGGTTAAAAATGGATTCTGCACCAACTCATTCTACAAGTGCGCCGATCGCATCAAGTACTGCCAGAARTCATGTGATTTGTGTACACCTGGATCCTGCAAAGATTCTGATAGTGTTCTTATTGAGGTTAATGGAGAACCAGATTTCGATTTTCATGTTTCTGAGTAAATAAATTGATGATTATAATGGGATCATTCAGTGAAAAGCAAATCAGAAAATTGCTGATTTTTTCTTATGCAGAGGGGTCCCCAATTTCTTTTTCTTCTACATACATATCTTCATTCTGTTTTGTTCACCTTCTCAATTTCACAACACCATTTTGAAGCTCGTTTTGTCCTGAGATTAAAAACGAACTCAGATTTCACTTCGCTCCACCCATTTTGATATATCCGACGCGTTGCGGTCGTGCGTTGCGTTTTTTAGATCCTCTGTCAGAACGTACTTCTGGGACATTGTTTTCACATGGACATCCCTTTTGGCTACATCTAAAACTGTTAGCTACCGTACCCTTACTCAAACTCTGTCCTCATGGCATTCATTCTCTTTTCTTCTTCTTTTTGATGTGGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCATGATTCTAGCACTAAGTAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAACATGAAAATCGAAATCT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GCCATGATTCTAGCACTAAGTAAGTTCTTAAAGAAATTTTTAGAAATAATGGAGGCCTTTTTCAGTTGCCCCAATTGGGTTAAAAATGGATTCTGCACCAACTCATTCTACAAGTGCGCCGATCGCATCAAGTACTGCCAGAAATCATGTGATTTGTGTACACCTGGATCCTGCAAAGATTCTGATAGTGTTCTTATTGAGGTTAATGGAGAACCAGATTTCGATTTTCATGTTTCT</canonical_amplicon>
		<polymorphic_amplicon>GCCATGATTCTAGCACTAAGTAAGTTCTTAAAGAAATTTTTAGAAATAATGGAGGCCTTTTTCAGTTGCCCCAATTGGGTTAAAAATGGATTCTGCACCAACTCATTCTACAAGTGCGCCGATCGCATCAAGTACTGCCAGAARTCATGTGATTTGTGTACACCTGGATCCTGCAAAGATTCTGATAGTGTTCTTATTGAGGTTAATGGAGAACCAGATTTCGATTTTCATGTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4243</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>119914</contig_pos>
        <strand>+</strand>
        <context>TCTCTTCAAT[C/G]TATCTTTTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCGCGTTGTATTATACTTGCTTCTTTTCCGAATGAAATCATCTCTTCAAT</left_flank>
        <right_flank>TATCTTTTATAATTTCAGGTAATGGCACCAAAACGTAAAAGTGCTCGAAT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATCGAGGAATTTTTAAGCTTCAGGAGCTAACGATGACTAGCGTCTAGAACAATATTATGTTTAAAACAACCTAATTAGTTCCAAACAACAATCGAATAATTTTTTACTAATTTTCAAATTCTCGACAAATCCAACACTATCTTATCTCCTATACTGGGTCTTATCTTGATCCAACTAAAAACTTTATGTATCTTACCAACTTGGATTTACGATAGATAAACCAATACTGGAATATCTTTTTGATTGATTTTCGAAATCAATAAGTTCTTTTTCTGTTCTGAGGACAGATCTGCAAAAGTCAATAATTGTTTTTTCTGTTCTCTCTTCTTTCCCAAGATGCCTCCAATAGCATCTGCTGACTCACTATTGCATGTTCGCTCTATTGTTTCGTCGAGTTTCGAATACCAGAACCGTTCCGTTCGACATTGATTTATTTTTTACCTATTCTCGCGTTGTATTATACTTGCTTCTTTTCCGAATGAAATCATCTCTTCAATGTATCTTTTATAATTTCAGGTAATGGCACCAAAACGTAAAAGTGCTCGAATTGCCGCAGCAGCACTGGTGGTAGTTCCGAAGGTGACTATCCCGAAGGCTAATGATAAATCTGCAACTGCGGAAATTGCGAAATTGAAGAAGCAACTAGCAAGAAACAAGACGGAATCCACGACTAAATTGCACCGAGCTCAATGTGATTTGGAGTATGCAAGAGATGAGTTACAGAGAAACAAAATGCAGCATAAACTGGAATCAGAAAAGAAAAATGAGGAACTTGCAACGCTGAAAACGGAGAAACAGGCATTGACTAACGAAATTAAGCATTTCAAGAATTGTAAGGATACGAGGAAAGCATATGGAATAGTGCAGGCAGAGTGCAAGAAAGCAGAACAGAGCCGGAAAAGAATGTTGGAAGCACAATCGCTTTTGAGAGCCGAGCAAGAGAAAAAGTTCAAAGAGGCTAAACCATGGAGACAGTGTGAGATCTGCACTGAGGAGTT</canonical>
            <polymorphic>GCATCGAGGAATTTTTAAGCTTCAGGAGCTAACGATGACTAGCGTCTAGAACAATATTATGTTTAAAACAACCTAATTAGTTCCAAACAACAATCGAATAATTTTTTACTAATTTTCAAATTCTCGACAAATCCAACACTATCTTATCTCCTATACTGGGTCTTATCTTGATCCAACTAAAAACTTTATGTATCTTACCAACTTGGATTTACGATAGATAAACCAATACTGGAATATCTTTTTGATTGATTTTCGAAATCAATAAGTTCTTTTTCTGTTCTGAGGACAGATCTGCAAAAGTCAATAATTGTTTTTTCTGTTCTCTCTTCTTTCCCAAGATGCCTCCAATAGCATCTGCTGACTCACTATTGCATGTTCGCTCTATTGTTTCGTCGAGTTTCGAATACCAGAACCGTTCCGTTCGACATTGATTTATTTTTTACCTATTCTCGCGTTGTATTATACTTGCTTCTTTTCCGAATGAAATCATCTCTTCAATSTATCTTTTATAATTTCAGGTAATGGCACCAAAACGTAAAAGTGCTCGAATTGCCGCAGCAGCACTGGTGGTAGTTCCGAAGGTGACTATCCCGAAGGCTAATGATAAATCTGCAACTGCGGAAATTGCGAAATTGAAGAAGCAACTAGCAAGAAACAAGACGGAATCCACGACTAAATTGCACCGAGCTCAATGTGATTTGGAGTATGCAAGAGATGAGTTACAGAGAAACAAAATGCAGCATAAACTGGAATCAGAAAAGAAAAATGAGGAACTTGCAACGCTGAAAACGGAGAAACAGGCATTGACTAACGAAATTAAGCATTTCAAGAATTGTAAGGATACGAGGAAAGCATATGGAATAGTGCAGGCAGAGTGCAAGAAAGCAGAACAGAGCCGGAAAAGAATGTTGGAAGCACAATCGCTTTTGAGAGCCGAGCAAGAGAAAAAGTTCAAAGAGGCTAAACCATGGAGACAGTGTGAGATCTGCACTGAGGAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGCATCTGCTGACTCACTATT</pcr_primer_p1>
		<pcr_primer_p2>GGATAGTCACCTTCGGAACTA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATAGCATCTGCTGACTCACTATTGCATGTTCGCTCTATTGTTTCGTCGAGTTTCGAATACCAGAACCGTTCCGTTCGACATTGATTTATTTTTTACCTATTCTCGCGTTGTATTATACTTGCTTCTTTTCCGAATGAAATCATCTCTTCAATGTATCTTTTATAATTTCAGGTAATGGCACCAAAACGTAAAAGTGCTCGAATTGCCGCAGCAGCACTGGTGGTAGTTCCGAAGGTGACTATCC</canonical_amplicon>
		<polymorphic_amplicon>ATAGCATCTGCTGACTCACTATTGCATGTTCGCTCTATTGTTTCGTCGAGTTTCGAATACCAGAACCGTTCCGTTCGACATTGATTTATTTTTTACCTATTCTCGCGTTGTATTATACTTGCTTCTTTTCCGAATGAAATCATCTCTTCAATSTATCTTTTATAATTTCAGGTAATGGCACCAAAACGTAAAAGTGCTCGAATTGCCGCAGCAGCACTGGTGGTAGTTCCGAAGGTGACTATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4244</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>159072</contig_pos>
        <strand>+</strand>
        <context>CTAGAAAATT[C/T]AGTTTCGTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGCATCGGCAGCACTCAGATTCTTGACTCCTTGTTTCGGCTAGAAAATT</left_flank>
        <right_flank>AGTTTCGTAATATTTGATTTTAAAGCCTCACCTTGAAATGGAACTTGCAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCACGAGAACGGTATGGGCAGTTGACTGGCAGCTGGATGTAGTTTGGTCCGAGACGATGATAGTGAGTATCAGTGTATGAGAAAAGACGTCCTTGAAGCATCTTGTCCGGCGAGAATTCGATTCCTGGTACAACGTGGGCTGGGCAGAAGGCAGATTGCTCAATCTGAAATATTTTTATGATGTTGAAGAAATTGATAAATATTATGCTACATACCTCAGCGAAATAGTTTTTTGGATTTCTGTTAAGAATCATTTTTCCAACTTCAATCAATGGGAAATCTCCATGTGGCCAGACCTTGGTCACATCGAATGGATTCATTTCCCATTTTTCAGCCTGCTCGAAAGTCATCACCTGGATGAACAAGGTCCATTCAGGGAAGTTTTTCTTCTCGATAGCATTGAACAAATCTTCGATAGCATAGTCTGGATTATCCCCAGCAAGTTTATTAGCATCGGCAGCACTCAGATTCTTGACTCCTTGTTTCGGCTAGAAAATTCAGTTTCGTAATATTTGATTTTAAAGCCTCACCTTGAAATGGAACTTGCAATAAATCGGTTGTCCTTCTTTGTTGACCATCTTGAATGCATGAGATCCATATCCATTCATATGGCGGAAACCATCAGGAGTTCCGCGATCCGAGAATAGGAACATTACTTGATGAATCGACTCAGGACGGTTAATCCAGAAGTCGTACATAGCATTGCGATCTTTCAAATGAGTGCGTGGATTTCTTTTCTGGGTGTGAATGAAATTCGGGAAATGGATTGCGTCACGGATGAAGAAGATTGGAGTGTTGTTTCCAACCAAATCCCAGTTGCCTTCTTCAGTGTAAAACTTGAGAGCAAATCCACGTGGATCGCGAGCAGTATCAGCGGATCCACTCTCTCCACCGACAGTAGAGAATCTAGCCAGCATTGGTGTCTTCTTTCCGATTTCACTGAACATATCAGCTTTACAGTATTTCGTGATATCATGGGTGACTTCAAAGTATCCATGA</canonical>
            <polymorphic>AGCACGAGAACGGTATGGGCAGTTGACTGGCAGCTGGATGTAGTTTGGTCCGAGACGATGATAGTGAGTATCAGTGTATGAGAAAAGACGTCCTTGAAGCATCTTGTCCGGCGAGAATTCGATTCCTGGTACAACGTGGGCTGGGCAGAAGGCAGATTGCTCAATCTGAAATATTTTTATGATGTTGAAGAAATTGATAAATATTATGCTACATACCTCAGCGAAATAGTTTTTTGGATTTCTGTTAAGAATCATTTTTCCAACTTCAATCAATGGGAAATCTCCATGTGGCCAGACCTTGGTCACATCGAATGGATTCATTTCCCATTTTTCAGCCTGCTCGAAAGTCATCACCTGGATGAACAAGGTCCATTCAGGGAAGTTTTTCTTCTCGATAGCATTGAACAAATCTTCGATAGCATAGTCTGGATTATCCCCAGCAAGTTTATTAGCATCGGCAGCACTCAGATTCTTGACTCCTTGTTTCGGCTAGAAAATTYAGTTTCGTAATATTTGATTTTAAAGCCTCACCTTGAAATGGAACTTGCAATAAATCGGTTGTCCTTCTTTGTTGACCATCTTGAATGCATGAGATCCATATCCATTCATATGGCGGAAACCATCAGGAGTTCCGCGATCCGAGAATAGGAACATTACTTGATGAATCGACTCAGGACGGTTAATCCAGAAGTCGTACATAGCATTGCGATCTTTCAAATGAGTGCGTGGATTTCTTTTCTGGGTGTGAATGAAATTCGGGAAATGGATTGCGTCACGGATGAAGAAGATTGGAGTGTTGTTTCCAACCAAATCCCAGTTGCCTTCTTCAGTGTAAAACTTGAGAGCAAATCCACGTGGATCGCGAGCAGTATCAGCGGATCCACTCTCTCCACCGACAGTAGAGAATCTAGCCAGCATTGGTGTCTTCTTTCCGATTTCACTGAACATATCAGCTTTACAGTATTTCGTGATATCATGGGTGACTTCAAAGTATCCATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>380 257 248 115</canonical_bands>
                <polymorphic_bands>637 248 115</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTATCCCCAGCAAGTTTATTAG</pcr_primer_p1>
		<pcr_primer_p2>GAGTCGATTCATCAAGTAATGTT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATTATCCCCAGCAAGTTTATTAGCATCGGCAGCACTCAGATTCTTGACTCCTTGTTTCGGCTAGAAAATTCAGTTTCGTAATATTTGATTTTAAAGCCTCACCTTGAAATGGAACTTGCAATAAATCGGTTGTCCTTCTTTGTTGACCATCTTGAATGCATGAGATCCATATCCATTCATATGGCGGAAACCATCAGGAGTTCCGCGATCCGAGAATAGGAACATTACTTGATGAATCGACTC</canonical_amplicon>
		<polymorphic_amplicon>ATTATCCCCAGCAAGTTTATTAGCATCGGCAGCACTCAGATTCTTGACTCCTTGTTTCGGCTAGAAAATTYAGTTTCGTAATATTTGATTTTAAAGCCTCACCTTGAAATGGAACTTGCAATAAATCGGTTGTCCTTCTTTGTTGACCATCTTGAATGCATGAGATCCATATCCATTCATATGGCGGAAACCATCAGGAGTTCCGCGATCCGAGAATAGGAACATTACTTGATGAATCGACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4245</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>160385</contig_pos>
        <strand></strand>
        <context>ATCGGAAACG[G/A]ATATCCAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAATTACTGCAGTAAAATTTTTAAAAAAATTGAAGAAAAAATCGGAAACG</left_flank>
        <right_flank>ATATCCAATTTTTTCATTTTCTTATGAATTTTCTAGGATTTCGTCTTCTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGAGACATTTTTAATATTAGGTTGTACAATTGTTGAGCACAATAGCGAATGTAACTCGATACACACTTGAATTAAATATGCGAAAAGAAAACTCACACAAATTGATCGCATGCGGAAGCATCGGCATTTTGGGGTCCTTTGATTGTGCGTATTTCGTTGAATCGACACTGAAAAATTAGGATTAGAGAGAAAAGTGCGAAAAAAGAGATTGTGCCGGAAACGGATTAGAAATTTCGAAAAATTGGCGAAGAAAATAAGGTAAACAAACCTGAAAAAACAACGAGCAAGGCGATGAATATTGCTTCTAGAAACGGAAGCGATCGTGAGATTTGGCATAATTATGCTTATTCGACTGGAAAAACAGCTTTTTCGAGTTGTCAACAAATCTATTTAATAAGATTAAACACGCAGTCAACAGTTTTTTGTTCTGAAAACAATATTTTCAGCCAATTACTGCAGTAAAATTTTTAAAAAAATTGAAGAAAAAATCGGAAACGGATATCCAATTTTTTCATTTTCTTATGAATTTTCTAGGATTTCGTCTTCTCTCCGACTATTATCCTTGTCAGCAGGGTTGCGGATTGACGGGCCGGCCCGTCGGCCCGGCCAGCCCGTCGGTCCGTCCATAGCTTTTTCAGAGAAAAATTTTTTTGATGAAAAATTTTTTGAGCGAACATAGGCACCAACGGGTGAAAAACAACAACGAAAACAAGACGTAAACAACCTGTAAACAACCTGTAAACAACTTGTAAACAACTTAAAGGCGCACCGTAAATCGACACAAATTTTTTCAATTTAATTCCTAAAATTTTTCGGATTTTTTGTTACTCTTGTTGTTTTTAAAATAAATCGGTTCATGAAAAATTTGTATCCCGGATTAAAACCTCAAGTGGGTAATTGATAACGTGAATAAAAAACTTTCATTCAAATCGGTTGAGTTTGAGCTGAGTTACAGTCCCGAACATACATGTGGAAAATTCGGAGTGGAAATTTTTTAC</canonical>
            <polymorphic>AAAGAGACATTTTTAATATTAGGTTGTACAATTGTTGAGCACAATAGCGAATGTAACTCGATACACACTTGAATTAAATATGCGAAAAGAAAACTCACACAAATTGATCGCATGCGGAAGCATCGGCATTTTGGGGTCCTTTGATTGTGCGTATTTCGTTGAATCGACACTGAAAAATTAGGATTAGAGAGAAAAGTGCGAAAAAAGAGATTGTGCCGGAAACGGATTAGAAATTTCGAAAAATTGGCGAAGAAAATAAGGTAAACAAACCTGAAAAAACAACGAGCAAGGCGATGAATATTGCTTCTAGAAACGGAAGCGATCGTGAGATTTGGCATAATTATGCTTATTCGACTGGAAAAACAGCTTTTTCGAGTTGTCAACAAATCTATTTAATAAGATTAAACACGCAGTCAACAGTTTTTTGTTCTGAAAACAATATTTTCAGCCAATTACTGCAGTAAAATTTTTAAAAAAATTGAAGAAAAAATCGGAAACGRATATCCAATTTTTTCATTTTCTTATGAATTTTCTAGGATTTCGTCTTCTCTCCGACTATTATCCTTGTCAGCAGGGTTGCGGATTGACGGGCCGGCCCGTCGGCCCGGCCAGCCCGTCGGTCCGTCCATAGCTTTTTCAGAGAAAAATTTTTTTGATGAAAAATTTTTTGAGCGAACATAGGCACCAACGGGTGAAAAACAACAACGAAAACAAGACGTAAACAACCTGTAAACAACCTGTAAACAACTTGTAAACAACTTAAAGGCGCACCGTAAATCGACACAAATTTTTTCAATTTAATTCCTAAAATTTTTCGGATTTTTTGTTACTCTTGTTGTTTTTAAAATAAATCGGTTCATGAAAAATTTGTATCCCGGATTAAAACCTCAAGTGGGTAATTGATAACGTGAATAAAAAACTTTCATTCAAATCGGTTGAGTTTGAGCTGAGTTACAGTCCCGAACATACATGTGGAAAATTCGGAGTGGAAATTTTTTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCGTGAGATTTGGCATAA</pcr_primer_p1>
		<pcr_primer_p2>AAGGATAATAGTCGGAGAGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GATCGTGAGATTTGGCATAATTATGCTTATTCGACTGGAAAAACAGCTTTTTCGAGTTGTCAACAAATCTATTTAATAAGATTAAACACGCAGTCAACAGTTTTTTGTTCTGAAAACAATATTTTCAGCCAATTACTGCAGTAAAATTTTTAAAAAAATTGAAGAAAAAATCGGAAACGGATATCCAATTTTTTCATTTTCTTATGAATTTTCTAGGATTTCGTCTTCTCTCCGACTATTATCCTT</canonical_amplicon>
		<polymorphic_amplicon>GATCGTGAGATTTGGCATAATTATGCTTATTCGACTGGAAAAACAGCTTTTTCGAGTTGTCAACAAATCTATTTAATAAGATTAAACACGCAGTCAACAGTTTTTTGTTCTGAAAACAATATTTTCAGCCAATTACTGCAGTAAAATTTTTAAAAAAATTGAAGAAAAAATCGGAAACGRATATCCAATTTTTTCATTTTCTTATGAATTTTCTAGGATTTCGTCTTCTCTCCGACTATTATCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4246</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>160324</contig_pos>
        <strand>+</strand>
        <context>TCTGAAAACA[A/C]TATTTTCAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTATTTAATAAGATTAAACACGCAGTCAACAGTTTTTTGTTCTGAAAACA</left_flank>
        <right_flank>TATTTTCAGCCAATTACTGCAGTAAAATTTTTAAAAAAATTGAAGAAAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATCTCGATACTGCTTCAACTGATCATCAGCAATGGCTCCTGGCTGGGAATCGCCGGCTGAAAGAGACATTTTTAATATTAGGTTGTACAATTGTTGAGCACAATAGCGAATGTAACTCGATACACACTTGAATTAAATATGCGAAAAGAAAACTCACACAAATTGATCGCATGCGGAAGCATCGGCATTTTGGGGTCCTTTGATTGTGCGTATTTCGTTGAATCGACACTGAAAAATTAGGATTAGAGAGAAAAGTGCGAAAAAAGAGATTGTGCCGGAAACGGATTAGAAATTTCGAAAAATTGGCGAAGAAAATAAGGTAAACAAACCTGAAAAAACAACGAGCAAGGCGATGAATATTGCTTCTAGAAACGGAAGCGATCGTGAGATTTGGCATAATTATGCTTATTCGACTGGAAAAACAGCTTTTTCGAGTTGTCAACAAATCTATTTAATAAGATTAAACACGCAGTCAACAGTTTTTTGTTCTGAAAACAATATTTTCAGCCAATTACTGCAGTAAAATTTTTAAAAAAATTGAAGAAAAAATCGGAAACGGATATCCAATTTTTTCATTTTCTTATGAATTTTCTAGGATTTCGTCTTCTCTCCGACTATTATCCTTGTCAGCAGGGTTGCGGATTGACGGGCCGGCCCGTCGGCCCGGCCAGCCCGTCGGTCCGTCCATAGCTTTTTCAGAGAAAAATTTTTTTGATGAAAAATTTTTTGAGCGAACATAGGCACCAACGGGTGAAAAACAACAACGAAAACAAGACGTAAACAACCTGTAAACAACCTGTAAACAACTTGTAAACAACTTAAAGGCGCACCGTAAATCGACACAAATTTTTTCAATTTAATTCCTAAAATTTTTCGGATTTTTTGTTACTCTTGTTGTTTTTAAAATAAATCGGTTCATGAAAAATTTGTATCCCGGATTAAAACCTCAAGTGGGTAATTGATAACGTGAATAAAAAACTTTCATTCAAATCGGTTGA</canonical>
            <polymorphic>GTATCTCGATACTGCTTCAACTGATCATCAGCAATGGCTCCTGGCTGGGAATCGCCGGCTGAAAGAGACATTTTTAATATTAGGTTGTACAATTGTTGAGCACAATAGCGAATGTAACTCGATACACACTTGAATTAAATATGCGAAAAGAAAACTCACACAAATTGATCGCATGCGGAAGCATCGGCATTTTGGGGTCCTTTGATTGTGCGTATTTCGTTGAATCGACACTGAAAAATTAGGATTAGAGAGAAAAGTGCGAAAAAAGAGATTGTGCCGGAAACGGATTAGAAATTTCGAAAAATTGGCGAAGAAAATAAGGTAAACAAACCTGAAAAAACAACGAGCAAGGCGATGAATATTGCTTCTAGAAACGGAAGCGATCGTGAGATTTGGCATAATTATGCTTATTCGACTGGAAAAACAGCTTTTTCGAGTTGTCAACAAATCTATTTAATAAGATTAAACACGCAGTCAACAGTTTTTTGTTCTGAAAACAMTATTTTCAGCCAATTACTGCAGTAAAATTTTTAAAAAAATTGAAGAAAAAATCGGAAACGGATATCCAATTTTTTCATTTTCTTATGAATTTTCTAGGATTTCGTCTTCTCTCCGACTATTATCCTTGTCAGCAGGGTTGCGGATTGACGGGCCGGCCCGTCGGCCCGGCCAGCCCGTCGGTCCGTCCATAGCTTTTTCAGAGAAAAATTTTTTTGATGAAAAATTTTTTGAGCGAACATAGGCACCAACGGGTGAAAAACAACAACGAAAACAAGACGTAAACAACCTGTAAACAACCTGTAAACAACTTGTAAACAACTTAAAGGCGCACCGTAAATCGACACAAATTTTTTCAATTTAATTCCTAAAATTTTTCGGATTTTTTGTTACTCTTGTTGTTTTTAAAATAAATCGGTTCATGAAAAATTTGTATCCCGGATTAAAACCTCAAGTGGGTAATTGATAACGTGAATAAAAAACTTTCATTCAAATCGGTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 282 141 78</canonical_bands>
                <polymorphic_bands>640 282 78</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCGTGAGATTTGGCATAA</pcr_primer_p1>
		<pcr_primer_p2>AAGGATAATAGTCGGAGAGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GATCGTGAGATTTGGCATAATTATGCTTATTCGACTGGAAAAACAGCTTTTTCGAGTTGTCAACAAATCTATTTAATAAGATTAAACACGCAGTCAACAGTTTTTTGTTCTGAAAACAATATTTTCAGCCAATTACTGCAGTAAAATTTTTAAAAAAATTGAAGAAAAAATCGGAAACGGATATCCAATTTTTTCATTTTCTTATGAATTTTCTAGGATTTCGTCTTCTCTCCGACTATTATCCTT</canonical_amplicon>
		<polymorphic_amplicon>GATCGTGAGATTTGGCATAATTATGCTTATTCGACTGGAAAAACAGCTTTTTCGAGTTGTCAACAAATCTATTTAATAAGATTAAACACGCAGTCAACAGTTTTTTGTTCTGAAAACAMTATTTTCAGCCAATTACTGCAGTAAAATTTTTAAAAAAATTGAAGAAAAAATCGGAAACGGATATCCAATTTTTTCATTTTCTTATGAATTTTCTAGGATTTCGTCTTCTCTCCGACTATTATCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4247</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>160286</contig_pos>
        <strand>+</strand>
        <context>ATTTAATAAG[A/G]TTAAACACGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGACTGGAAAAACAGCTTTTTCGAGTTGTCAACAAATCTATTTAATAAG</left_flank>
        <right_flank>TTAAACACGCAGTCAACAGTTTTTTGTTCTGAAAACAATATTTTCAGCCA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAATGTGAAAATCAAGAATTTTCCTTACCTTGTGTGTATCTCGATACTGCTTCAACTGATCATCAGCAATGGCTCCTGGCTGGGAATCGCCGGCTGAAAGAGACATTTTTAATATTAGGTTGTACAATTGTTGAGCACAATAGCGAATGTAACTCGATACACACTTGAATTAAATATGCGAAAAGAAAACTCACACAAATTGATCGCATGCGGAAGCATCGGCATTTTGGGGTCCTTTGATTGTGCGTATTTCGTTGAATCGACACTGAAAAATTAGGATTAGAGAGAAAAGTGCGAAAAAAGAGATTGTGCCGGAAACGGATTAGAAATTTCGAAAAATTGGCGAAGAAAATAAGGTAAACAAACCTGAAAAAACAACGAGCAAGGCGATGAATATTGCTTCTAGAAACGGAAGCGATCGTGAGATTTGGCATAATTATGCTTATTCGACTGGAAAAACAGCTTTTTCGAGTTGTCAACAAATCTATTTAATAAGATTAAACACGCAGTCAACAGTTTTTTGTTCTGAAAACAATATTTTCAGCCAATTACTGCAGTAAAATTTTTAAAAAAATTGAAGAAAAAATCGGAAACGGATATCCAATTTTTTCATTTTCTTATGAATTTTCTAGGATTTCGTCTTCTCTCCGACTATTATCCTTGTCAGCAGGGTTGCGGATTGACGGGCCGGCCCGTCGGCCCGGCCAGCCCGTCGGTCCGTCCATAGCTTTTTCAGAGAAAAATTTTTTTGATGAAAAATTTTTTGAGCGAACATAGGCACCAACGGGTGAAAAACAACAACGAAAACAAGACGTAAACAACCTGTAAACAACCTGTAAACAACTTGTAAACAACTTAAAGGCGCACCGTAAATCGACACAAATTTTTTCAATTTAATTCCTAAAATTTTTCGGATTTTTTGTTACTCTTGTTGTTTTTAAAATAAATCGGTTCATGAAAAATTTGTATCCCGGATTAAAACCTCAAGTGGGTAATT</canonical>
            <polymorphic>AAAAAATGTGAAAATCAAGAATTTTCCTTACCTTGTGTGTATCTCGATACTGCTTCAACTGATCATCAGCAATGGCTCCTGGCTGGGAATCGCCGGCTGAAAGAGACATTTTTAATATTAGGTTGTACAATTGTTGAGCACAATAGCGAATGTAACTCGATACACACTTGAATTAAATATGCGAAAAGAAAACTCACACAAATTGATCGCATGCGGAAGCATCGGCATTTTGGGGTCCTTTGATTGTGCGTATTTCGTTGAATCGACACTGAAAAATTAGGATTAGAGAGAAAAGTGCGAAAAAAGAGATTGTGCCGGAAACGGATTAGAAATTTCGAAAAATTGGCGAAGAAAATAAGGTAAACAAACCTGAAAAAACAACGAGCAAGGCGATGAATATTGCTTCTAGAAACGGAAGCGATCGTGAGATTTGGCATAATTATGCTTATTCGACTGGAAAAACAGCTTTTTCGAGTTGTCAACAAATCTATTTAATAAGRTTAAACACGCAGTCAACAGTTTTTTGTTCTGAAAACAATATTTTCAGCCAATTACTGCAGTAAAATTTTTAAAAAAATTGAAGAAAAAATCGGAAACGGATATCCAATTTTTTCATTTTCTTATGAATTTTCTAGGATTTCGTCTTCTCTCCGACTATTATCCTTGTCAGCAGGGTTGCGGATTGACGGGCCGGCCCGTCGGCCCGGCCAGCCCGTCGGTCCGTCCATAGCTTTTTCAGAGAAAAATTTTTTTGATGAAAAATTTTTTGAGCGAACATAGGCACCAACGGGTGAAAAACAACAACGAAAACAAGACGTAAACAACCTGTAAACAACCTGTAAACAACTTGTAAACAACTTAAAGGCGCACCGTAAATCGACACAAATTTTTTCAATTTAATTCCTAAAATTTTTCGGATTTTTTGTTACTCTTGTTGTTTTTAAAATAAATCGGTTCATGAAAAATTTGTATCCCGGATTAAAACCTCAAGTGGGTAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCGTGAGATTTGGCATAA</pcr_primer_p1>
		<pcr_primer_p2>AAGGATAATAGTCGGAGAGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GATCGTGAGATTTGGCATAATTATGCTTATTCGACTGGAAAAACAGCTTTTTCGAGTTGTCAACAAATCTATTTAATAAGATTAAACACGCAGTCAACAGTTTTTTGTTCTGAAAACAATATTTTCAGCCAATTACTGCAGTAAAATTTTTAAAAAAATTGAAGAAAAAATCGGAAACGGATATCCAATTTTTTCATTTTCTTATGAATTTTCTAGGATTTCGTCTTCTCTCCGACTATTATCCTT</canonical_amplicon>
		<polymorphic_amplicon>GATCGTGAGATTTGGCATAATTATGCTTATTCGACTGGAAAAACAGCTTTTTCGAGTTGTCAACAAATCTATTTAATAAGRTTAAACACGCAGTCAACAGTTTTTTGTTCTGAAAACAATATTTTCAGCCAATTACTGCAGTAAAATTTTTAAAAAAATTGAAGAAAAAATCGGAAACGGATATCCAATTTTTTCATTTTCTTATGAATTTTCTAGGATTTCGTCTTCTCTCCGACTATTATCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4248</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>160268</contig_pos>
        <strand>+</strand>
        <context>CGAGTTGTCA[A/G]CAAATCTATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGCATAATTATGCTTATTCGACTGGAAAAACAGCTTTTTCGAGTTGTCA</left_flank>
        <right_flank>CAAATCTATTTAATAAGATTAAACACGCAGTCAACAGTTTTTTGTTCTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATACAAATTCTCATAGAAAAAATGTGAAAATCAAGAATTTTCCTTACCTTGTGTGTATCTCGATACTGCTTCAACTGATCATCAGCAATGGCTCCTGGCTGGGAATCGCCGGCTGAAAGAGACATTTTTAATATTAGGTTGTACAATTGTTGAGCACAATAGCGAATGTAACTCGATACACACTTGAATTAAATATGCGAAAAGAAAACTCACACAAATTGATCGCATGCGGAAGCATCGGCATTTTGGGGTCCTTTGATTGTGCGTATTTCGTTGAATCGACACTGAAAAATTAGGATTAGAGAGAAAAGTGCGAAAAAAGAGATTGTGCCGGAAACGGATTAGAAATTTCGAAAAATTGGCGAAGAAAATAAGGTAAACAAACCTGAAAAAACAACGAGCAAGGCGATGAATATTGCTTCTAGAAACGGAAGCGATCGTGAGATTTGGCATAATTATGCTTATTCGACTGGAAAAACAGCTTTTTCGAGTTGTCAACAAATCTATTTAATAAGATTAAACACGCAGTCAACAGTTTTTTGTTCTGAAAACAATATTTTCAGCCAATTACTGCAGTAAAATTTTTAAAAAAATTGAAGAAAAAATCGGAAACGGATATCCAATTTTTTCATTTTCTTATGAATTTTCTAGGATTTCGTCTTCTCTCCGACTATTATCCTTGTCAGCAGGGTTGCGGATTGACGGGCCGGCCCGTCGGCCCGGCCAGCCCGTCGGTCCGTCCATAGCTTTTTCAGAGAAAAATTTTTTTGATGAAAAATTTTTTGAGCGAACATAGGCACCAACGGGTGAAAAACAACAACGAAAACAAGACGTAAACAACCTGTAAACAACCTGTAAACAACTTGTAAACAACTTAAAGGCGCACCGTAAATCGACACAAATTTTTTCAATTTAATTCCTAAAATTTTTCGGATTTTTTGTTACTCTTGTTGTTTTTAAAATAAATCGGTTCATGAAAAATTTGTATCCCGGATTAA</canonical>
            <polymorphic>GAATACAAATTCTCATAGAAAAAATGTGAAAATCAAGAATTTTCCTTACCTTGTGTGTATCTCGATACTGCTTCAACTGATCATCAGCAATGGCTCCTGGCTGGGAATCGCCGGCTGAAAGAGACATTTTTAATATTAGGTTGTACAATTGTTGAGCACAATAGCGAATGTAACTCGATACACACTTGAATTAAATATGCGAAAAGAAAACTCACACAAATTGATCGCATGCGGAAGCATCGGCATTTTGGGGTCCTTTGATTGTGCGTATTTCGTTGAATCGACACTGAAAAATTAGGATTAGAGAGAAAAGTGCGAAAAAAGAGATTGTGCCGGAAACGGATTAGAAATTTCGAAAAATTGGCGAAGAAAATAAGGTAAACAAACCTGAAAAAACAACGAGCAAGGCGATGAATATTGCTTCTAGAAACGGAAGCGATCGTGAGATTTGGCATAATTATGCTTATTCGACTGGAAAAACAGCTTTTTCGAGTTGTCARCAAATCTATTTAATAAGATTAAACACGCAGTCAACAGTTTTTTGTTCTGAAAACAATATTTTCAGCCAATTACTGCAGTAAAATTTTTAAAAAAATTGAAGAAAAAATCGGAAACGGATATCCAATTTTTTCATTTTCTTATGAATTTTCTAGGATTTCGTCTTCTCTCCGACTATTATCCTTGTCAGCAGGGTTGCGGATTGACGGGCCGGCCCGTCGGCCCGGCCAGCCCGTCGGTCCGTCCATAGCTTTTTCAGAGAAAAATTTTTTTGATGAAAAATTTTTTGAGCGAACATAGGCACCAACGGGTGAAAAACAACAACGAAAACAAGACGTAAACAACCTGTAAACAACCTGTAAACAACTTGTAAACAACTTAAAGGCGCACCGTAAATCGACACAAATTTTTTCAATTTAATTCCTAAAATTTTTCGGATTTTTTGTTACTCTTGTTGTTTTTAAAATAAATCGGTTCATGAAAAATTTGTATCCCGGATTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>498 468 34</canonical_bands>
                <polymorphic_bands>532 468</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>380 305 130 118 34 11 11 11</canonical_bands>
                <polymorphic_bands>380 305 152 130 11 11 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCGTGAGATTTGGCATAA</pcr_primer_p1>
		<pcr_primer_p2>AAGGATAATAGTCGGAGAGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GATCGTGAGATTTGGCATAATTATGCTTATTCGACTGGAAAAACAGCTTTTTCGAGTTGTCAACAAATCTATTTAATAAGATTAAACACGCAGTCAACAGTTTTTTGTTCTGAAAACAATATTTTCAGCCAATTACTGCAGTAAAATTTTTAAAAAAATTGAAGAAAAAATCGGAAACGGATATCCAATTTTTTCATTTTCTTATGAATTTTCTAGGATTTCGTCTTCTCTCCGACTATTATCCTT</canonical_amplicon>
		<polymorphic_amplicon>GATCGTGAGATTTGGCATAATTATGCTTATTCGACTGGAAAAACAGCTTTTTCGAGTTGTCARCAAATCTATTTAATAAGATTAAACACGCAGTCAACAGTTTTTTGTTCTGAAAACAATATTTTCAGCCAATTACTGCAGTAAAATTTTTAAAAAAATTGAAGAAAAAATCGGAAACGGATATCCAATTTTTTCATTTTCTTATGAATTTTCTAGGATTTCGTCTTCTCTCCGACTATTATCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4249</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>163603</contig_pos>
        <strand></strand>
        <context>cggtggccat[G/A]tcggaaggac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCGGTAATCTACAAAAAAATCGGAGCGGTGGGAAAATCGACGGTGGCCAT</left_flank>
        <right_flank>TCGGAAGGACCCACAATAACGACTACCGTCACCTAAAATTTTAGCGATTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTGTCAACTAACAAAATGTTAATCAAAATATCACAAATTTTTTATCAGTTGACAAAATTTTGATATCTTTCACAGGAACCGAGATATGTGAGTTCAAAGTTGGGGTGGGCTTCCATTAAAGGAAATACACGGTAACTATGTACTCCGATGCTTGGCTACAGTAACTTTTTAAAATCTGAAAAGTTTATAACCGTCGTCTTACTTAGAAACATTAAAAAAAACACATTTGTCTCTGAACTAGATTTTCCAAAAACTGGGAGGCTTCAGTCAAGTATTCCATCTCCAAATCACTATGCCTAGTTGCGGTCCGTTTGGACAGCGTCAACCGAAATTTTGGGCAAATTCGTAGTTTTCGGCTACACGGAAACTCTGCTCGTTATCTGGTTTTGAATAGAAAATTTCAGAAAACTGTAAAAATTTGAATATCGTAGTTGTGACGATCCATATCGGTAATCTACAAAAAAATCGGAGCGGTGGGAAAATCGACGGTGGCCATGTCGGAAGGACCCACAATAACGACTACCGTCACCTAAAATTTTAGCGATTTTTCAAAAGAAGTTTATTTTTTATTGAATTTTAGGTAAATTTTTAGATCGTTTTAGGTTTTTCAGCTATTTTCAAAGATTCTTTTTCGAATTGCCGGGTTTTTTTGTATGAAATTTGATGGAACGTTGTTTTACTGAGGATTACTGTAGAAACCTAATTTCCTTTTTCGTATTTTTTTTGCAAACACAATCACGTCAAAGTGCAGATAAAAACTGATTTGTTGTCTGAAAAAAAACTACAAAATACAAGGTTTCCTACAGTAATCTACAGTAATCTTCTGTCAAGAACACCCTAATTTCAGACAAAAAAGCCGGAAAACCGAAAAAGAATCTTCAAAAATAGATGAAAAACCTAAAAAGGTCTAAAAATTTTGCAAAAAATCGGAGAAAATTTTCTCGTTTCCCTCAAAAACCAAACAACTTTTATTTTAATACAGATCACATTCTCATTC</canonical>
            <polymorphic>TTTTTGTCAACTAACAAAATGTTAATCAAAATATCACAAATTTTTTATCAGTTGACAAAATTTTGATATCTTTCACAGGAACCGAGATATGTGAGTTCAAAGTTGGGGTGGGCTTCCATTAAAGGAAATACACGGTAACTATGTACTCCGATGCTTGGCTACAGTAACTTTTTAAAATCTGAAAAGTTTATAACCGTCGTCTTACTTAGAAACATTAAAAAAAACACATTTGTCTCTGAACTAGATTTTCCAAAAACTGGGAGGCTTCAGTCAAGTATTCCATCTCCAAATCACTATGCCTAGTTGCGGTCCGTTTGGACAGCGTCAACCGAAATTTTGGGCAAATTCGTAGTTTTCGGCTACACGGAAACTCTGCTCGTTATCTGGTTTTGAATAGAAAATTTCAGAAAACTGTAAAAATTTGAATATCGTAGTTGTGACGATCCATATCGGTAATCTACAAAAAAATCGGAGCGGTGGGAAAATCGACGGTGGCCATRTCGGAAGGACCCACAATAACGACTACCGTCACCTAAAATTTTAGCGATTTTTCAAAAGAAGTTTATTTTTTATTGAATTTTAGGTAAATTTTTAGATCGTTTTAGGTTTTTCAGCTATTTTCAAAGATTCTTTTTCGAATTGCCGGGTTTTTTTGTATGAAATTTGATGGAACGTTGTTTTACTGAGGATTACTGTAGAAACCTAATTTCCTTTTTCGTATTTTTTTTGCAAACACAATCACGTCAAAGTGCAGATAAAAACTGATTTGTTGTCTGAAAAAAAACTACAAAATACAAGGTTTCCTACAGTAATCTACAGTAATCTTCTGTCAAGAACACCCTAATTTCAGACAAAAAAGCCGGAAAACCGAAAAAGAATCTTCAAAAATAGATGAAAAACCTAAAAAGGTCTAAAAATTTTGCAAAAAATCGGAGAAAATTTTCTCGTTTCCCTCAAAAACCAAACAACTTTTATTTTAATACAGATCACATTCTCATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACGATCCATATCGGTAATCTA</pcr_primer_p1>
		<pcr_primer_p2>GTTTGGTTTTTGAGGGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>528</pcr_amplicon_size>
		<canonical_amplicon>GACGATCCATATCGGTAATCTACAAAAAAATCGGAGCGGTGGGAAAATCGACGGTGGCCATGTCGGAAGGACCCACAATAACGACTACCGTCACCTAAAATTTTAGCGATTTTTCAAAAGAAGTTTATTTTTTATTGAATTTTAGGTAAATTTTTAGATCGTTTTAGGTTTTTCAGCTATTTTCAAAGATTCTTTTTCGAATTGCCGGGTTTTTTTGTATGAAATTTGATGGAACGTTGTTTTACTGAGGATTACTGTAGAAACCTAATTTCCTTTTTCGTATTTTTTTTGCAAACACAATCACGTCAAAGTGCAGATAAAAACTGATTTGTTGTCTGAAAAAAAACTACAAAATACAAGGTTTCCTACAGTAATCTACAGTAATCTTCTGTCAAGAACACCCTAATTTCAGACAAAAAAGCCGGAAAACCGAAAAAGAATCTTCAAAAATAGATGAAAAACCTAAAAAGGTCTAAAAATTTTGCAAAAAATCGGAGAAAATTTTCTCGTTTCCCTCAAAAACCAAAC</canonical_amplicon>
		<polymorphic_amplicon>GACGATCCATATCGGTAATCTACAAAAAAATCGGAGCGGTGGGAAAATCGACGGTGGCCATRTCGGAAGGACCCACAATAACGACTACCGTCACCTAAAATTTTAGCGATTTTTCAAAAGAAGTTTATTTTTTATTGAATTTTAGGTAAATTTTTAGATCGTTTTAGGTTTTTCAGCTATTTTCAAAGATTCTTTTTCGAATTGCCGGGTTTTTTTGTATGAAATTTGATGGAACGTTGTTTTACTGAGGATTACTGTAGAAACCTAATTTCCTTTTTCGTATTTTTTTTGCAAACACAATCACGTCAAAGTGCAGATAAAAACTGATTTGTTGTCTGAAAAAAAACTACAAAATACAAGGTTTCCTACAGTAATCTACAGTAATCTTCTGTCAAGAACACCCTAATTTCAGACAAAAAAGCCGGAAAACCGAAAAAGAATCTTCAAAAATAGATGAAAAACCTAAAAAGGTCTAAAAATTTTGCAAAAAATCGGAGAAAATTTTCTCGTTTCCCTCAAAAACCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4250</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>167578</contig_pos>
        <strand>+</strand>
        <context>AAAAACGAAG[A/C]AGAACACCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATTTTCTTGATATCATTCTCAGAAATTCCTTCTTAAACAAAAACGAAG</left_flank>
        <right_flank>AGAACACCAAATCATGCTGGGGATTAGTTTTTGCTCCAGATTTTGTTGGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTACATAAAAAGTTTTCATAGAGATTAAGAAATGCCCATTCAATTCTAGAAGCTCAAAAAACTACGAAAGTATACCGTAAAATCTGTAACACAAGGGCTTCACACTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATATCAAACATTTGTCAACTCAAAAAACACTTTTGATAGTATCAAAAGTGTTATTATCTCTTTTGGTTATATAATTAAACAATTTATCAGTTGACAACTTTTTCATCTTTCACAGGAATCGAGATAAATGAGCTAGAAGTTAAAAGTTAGTGTGCCCTTCTATTAGAGGCTTCACGGTAAGTGGGAATTTTCAAATGTATGATCCTAGTTGCACTTTGACGACGTCAACCTGCAAGGAAAAAACCTTCCCACTCTTTTCAATTTCTGATCTGGATGTGGATTTGCCTTTAATTTTCAACTTTTTAAATTTTCTTGATATCATTCTCAGAAATTCCTTCTTAAACAAAAACGAAGAAGAACACCAAATCATGCTGGGGATTAGTTTTTGCTCCAGATTTTGTTGGTACAAAAAAATGTAGCTTGTGTTTTAGCAGGATGATACAAACTTTAAAAAATATCATATGTCATGTGTTCATATAATTGAGTTTTTTTTGGATTTGAATACCCTAACAACTGTATTAGAAGTGCCCGCTCTTCTATTATGGGGGCCCTTCAATTAGAGGAGCCTTTCTTTTTGAAACATTTTCATAAAAAATTTGTGGTTCTCAATTCAAAACTTATGAAAATTTGTCAATTTCCCCCATATATTAAGATACTTTTTTTAGCAAAAAAAGAGTCTTTCAACTAATTTCTGTAGTTTTGAAATTTCCGGAATATTTGTAACTGAAAACGGTCAGAAGTTTTTAATTTAAAACAACACATATAGAAAGAGGCCTTTCTTTTCTTCACACCCTCTCTCGGAGGGCCTTCTATTAGAGGGACTCTCCTATTAAAGGAGCCCTTCTGATACAGGTT</canonical>
            <polymorphic>ATTACATAAAAAGTTTTCATAGAGATTAAGAAATGCCCATTCAATTCTAGAAGCTCAAAAAACTACGAAAGTATACCGTAAAATCTGTAACACAAGGGCTTCACACTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATATCAAACATTTGTCAACTCAAAAAACACTTTTGATAGTATCAAAAGTGTTATTATCTCTTTTGGTTATATAATTAAACAATTTATCAGTTGACAACTTTTTCATCTTTCACAGGAATCGAGATAAATGAGCTAGAAGTTAAAAGTTAGTGTGCCCTTCTATTAGAGGCTTCACGGTAAGTGGGAATTTTCAAATGTATGATCCTAGTTGCACTTTGACGACGTCAACCTGCAAGGAAAAAACCTTCCCACTCTTTTCAATTTCTGATCTGGATGTGGATTTGCCTTTAATTTTCAACTTTTTAAATTTTCTTGATATCATTCTCAGAAATTCCTTCTTAAACAAAAACGAAGMAGAACACCAAATCATGCTGGGGATTAGTTTTTGCTCCAGATTTTGTTGGTACAAAAAAATGTAGCTTGTGTTTTAGCAGGATGATACAAACTTTAAAAAATATCATATGTCATGTGTTCATATAATTGAGTTTTTTTTGGATTTGAATACCCTAACAACTGTATTAGAAGTGCCCGCTCTTCTATTATGGGGGCCCTTCAATTAGAGGAGCCTTTCTTTTTGAAACATTTTCATAAAAAATTTGTGGTTCTCAATTCAAAACTTATGAAAATTTGTCAATTTCCCCCATATATTAAGATACTTTTTTTAGCAAAAAAAGAGTCTTTCAACTAATTTCTGTAGTTTTGAAATTTCCGGAATATTTGTAACTGAAAACGGTCAGAAGTTTTTAATTTAAAACAACACATATAGAAAGAGGCCTTTCTTTTCTTCACACCCTCTCTCGGAGGGCCTTCTATTAGAGGGACTCTCCTATTAAAGGAGCCCTTCTGATACAGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTATGATCCTAGTTGCACTT</pcr_primer_p1>
		<pcr_primer_p2>GTATCATCCTGCTAAAACACAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATGTATGATCCTAGTTGCACTTTGACGACGTCAACCTGCAAGGAAAAAACCTTCCCACTCTTTTCAATTTCTGATCTGGATGTGGATTTGCCTTTAATTTTCAACTTTTTAAATTTTCTTGATATCATTCTCAGAAATTCCTTCTTAAACAAAAACGAAGAAGAACACCAAATCATGCTGGGGATTAGTTTTTGCTCCAGATTTTGTTGGTACAAAAAAATGTAGCTTGTGTTTTAGCAGGATGATAC</canonical_amplicon>
		<polymorphic_amplicon>AATGTATGATCCTAGTTGCACTTTGACGACGTCAACCTGCAAGGAAAAAACCTTCCCACTCTTTTCAATTTCTGATCTGGATGTGGATTTGCCTTTAATTTTCAACTTTTTAAATTTTCTTGATATCATTCTCAGAAATTCCTTCTTAAACAAAAACGAAGMAGAACACCAAATCATGCTGGGGATTAGTTTTTGCTCCAGATTTTGTTGGTACAAAAAAATGTAGCTTGTGTTTTAGCAGGATGATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4251</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>167509</contig_pos>
        <strand>+</strand>
        <context>GTGGATTTGC[C/T]TTTAATTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAAAAAACCTTCCCACTCTTTTCAATTTCTGATCTGGATGTGGATTTGC</left_flank>
        <right_flank>TTTAATTTTCAACTTTTTAAATTTTCTTGATATCATTCTCAGAAATTCCT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTAGTATTTTTTAAAATTTATTTGCTATAACTTTCAACGGAAAGTTTTGGTTCCAGACTGTGTGATATTACATAAAAAGTTTTCATAGAGATTAAGAAATGCCCATTCAATTCTAGAAGCTCAAAAAACTACGAAAGTATACCGTAAAATCTGTAACACAAGGGCTTCACACTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATATCAAACATTTGTCAACTCAAAAAACACTTTTGATAGTATCAAAAGTGTTATTATCTCTTTTGGTTATATAATTAAACAATTTATCAGTTGACAACTTTTTCATCTTTCACAGGAATCGAGATAAATGAGCTAGAAGTTAAAAGTTAGTGTGCCCTTCTATTAGAGGCTTCACGGTAAGTGGGAATTTTCAAATGTATGATCCTAGTTGCACTTTGACGACGTCAACCTGCAAGGAAAAAACCTTCCCACTCTTTTCAATTTCTGATCTGGATGTGGATTTGCCTTTAATTTTCAACTTTTTAAATTTTCTTGATATCATTCTCAGAAATTCCTTCTTAAACAAAAACGAAGAAGAACACCAAATCATGCTGGGGATTAGTTTTTGCTCCAGATTTTGTTGGTACAAAAAAATGTAGCTTGTGTTTTAGCAGGATGATACAAACTTTAAAAAATATCATATGTCATGTGTTCATATAATTGAGTTTTTTTTGGATTTGAATACCCTAACAACTGTATTAGAAGTGCCCGCTCTTCTATTATGGGGGCCCTTCAATTAGAGGAGCCTTTCTTTTTGAAACATTTTCATAAAAAATTTGTGGTTCTCAATTCAAAACTTATGAAAATTTGTCAATTTCCCCCATATATTAAGATACTTTTTTTAGCAAAAAAAGAGTCTTTCAACTAATTTCTGTAGTTTTGAAATTTCCGGAATATTTGTAACTGAAAACGGTCAGAAGTTTTTAATTTAAAACAACACATATAGAAAGAGGCCTTTCTTTTCTT</canonical>
            <polymorphic>CATTTAGTATTTTTTAAAATTTATTTGCTATAACTTTCAACGGAAAGTTTTGGTTCCAGACTGTGTGATATTACATAAAAAGTTTTCATAGAGATTAAGAAATGCCCATTCAATTCTAGAAGCTCAAAAAACTACGAAAGTATACCGTAAAATCTGTAACACAAGGGCTTCACACTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATATCAAACATTTGTCAACTCAAAAAACACTTTTGATAGTATCAAAAGTGTTATTATCTCTTTTGGTTATATAATTAAACAATTTATCAGTTGACAACTTTTTCATCTTTCACAGGAATCGAGATAAATGAGCTAGAAGTTAAAAGTTAGTGTGCCCTTCTATTAGAGGCTTCACGGTAAGTGGGAATTTTCAAATGTATGATCCTAGTTGCACTTTGACGACGTCAACCTGCAAGGAAAAAACCTTCCCACTCTTTTCAATTTCTGATCTGGATGTGGATTTGCYTTTAATTTTCAACTTTTTAAATTTTCTTGATATCATTCTCAGAAATTCCTTCTTAAACAAAAACGAAGAAGAACACCAAATCATGCTGGGGATTAGTTTTTGCTCCAGATTTTGTTGGTACAAAAAAATGTAGCTTGTGTTTTAGCAGGATGATACAAACTTTAAAAAATATCATATGTCATGTGTTCATATAATTGAGTTTTTTTTGGATTTGAATACCCTAACAACTGTATTAGAAGTGCCCGCTCTTCTATTATGGGGGCCCTTCAATTAGAGGAGCCTTTCTTTTTGAAACATTTTCATAAAAAATTTGTGGTTCTCAATTCAAAACTTATGAAAATTTGTCAATTTCCCCCATATATTAAGATACTTTTTTTAGCAAAAAAAGAGTCTTTCAACTAATTTCTGTAGTTTTGAAATTTCCGGAATATTTGTAACTGAAAACGGTCAGAAGTTTTTAATTTAAAACAACACATATAGAAAGAGGCCTTTCTTTTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTATGATCCTAGTTGCACTT</pcr_primer_p1>
		<pcr_primer_p2>GTATCATCCTGCTAAAACACAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATGTATGATCCTAGTTGCACTTTGACGACGTCAACCTGCAAGGAAAAAACCTTCCCACTCTTTTCAATTTCTGATCTGGATGTGGATTTGCCTTTAATTTTCAACTTTTTAAATTTTCTTGATATCATTCTCAGAAATTCCTTCTTAAACAAAAACGAAGAAGAACACCAAATCATGCTGGGGATTAGTTTTTGCTCCAGATTTTGTTGGTACAAAAAAATGTAGCTTGTGTTTTAGCAGGATGATAC</canonical_amplicon>
		<polymorphic_amplicon>AATGTATGATCCTAGTTGCACTTTGACGACGTCAACCTGCAAGGAAAAAACCTTCCCACTCTTTTCAATTTCTGATCTGGATGTGGATTTGCYTTTAATTTTCAACTTTTTAAATTTTCTTGATATCATTCTCAGAAATTCCTTCTTAAACAAAAACGAAGAAGAACACCAAATCATGCTGGGGATTAGTTTTTGCTCCAGATTTTGTTGGTACAAAAAAATGTAGCTTGTGTTTTAGCAGGATGATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4252</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>167813</contig_pos>
        <strand></strand>
        <context>ACATTTTCAT[A/C]MAAAATTTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTATGGGGGCCCTTCAATTAGAGGAGCCTTTCTTTTTGAAACATTTTCAT</left_flank>
        <right_flank>AAAAATTTGTGGTTCTCAATTCAAAACTTATGAAAATTTGTCAATTTCCC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGACAACTTTTTCATCTTTCACAGGAATCGAGATAAATGAGCTAGAAGTTAAAAGTTAGTGTGCCCTTCTATTAGAGGCTTCACGGTAAGTGGGAATTTTCAAATGTATGATCCTAGTTGCACTTTGACGACGTCAACCTGCAAGGAAAAAACCTTCCCACTCTTTTCAATTTCTGATCTGGATGTGGATTTGCCTTTAATTTTCAACTTTTTAAATTTTCTTGATATCATTCTCAGAAATTCCTTCTTAAACAAAAACGAAGAAGAACACCAAATCATGCTGGGGATTAGTTTTTGCTCCAGATTTTGTTGGTACAAAAAAATGTAGCTTGTGTTTTAGCAGGATGATACAAACTTTAAAAAATATCATATGTCATGTGTTCATATAATTGAGTTTTTTTTGGATTTGAATACCCTAACAACTGTATTAGAAGTGCCCGCTCTTCTATTATGGGGGCCCTTCAATTAGAGGAGCCTTTCTTTTTGAAACATTTTCATAAAAAATTTGTGGTTCTCAATTCAAAACTTATGAAAATTTGTCAATTTCCCCCATATATTAAGATACTTTTTTTAGCAAAAAAAGAGTCTTTCAACTAATTTCTGTAGTTTTGAAATTTCCGGAATATTTGTAACTGAAAACGGTCAGAAGTTTTTAATTTAAAACAACACATATAGAAAGAGGCCTTTCTTTTCTTCACACCCTCTCTCGGAGGGCCTTCTATTAGAGGGACTCTCCTATTAAAGGAGCCCTTCTGATACAGGTTTTACGATATGTTGGAGTTACGTTAGACCGCGAAAAAAGACAATCTGTTCACGGTTTTTCCCGAATTCCTGTTTTCCTGCTTCTGCATTCAGAAATTTCCAGATTCTTCCTTCAAAATTCTGATCGTTGACACATTGTTCTATTTTCAGAGAATCTTCTCATCCGTCATTCTCATCATCATCATTTCCATAATTTCTGCTCTCCAGACGGAACAAAAAGATTCCCTTTCTCTTTTT</canonical>
            <polymorphic>TTGACAACTTTTTCATCTTTCACAGGAATCGAGATAAATGAGCTAGAAGTTAAAAGTTAGTGTGCCCTTCTATTAGAGGCTTCACGGTAAGTGGGAATTTTCAAATGTATGATCCTAGTTGCACTTTGACGACGTCAACCTGCAAGGAAAAAACCTTCCCACTCTTTTCAATTTCTGATCTGGATGTGGATTTGCCTTTAATTTTCAACTTTTTAAATTTTCTTGATATCATTCTCAGAAATTCCTTCTTAAACAAAAACGAAGAAGAACACCAAATCATGCTGGGGATTAGTTTTTGCTCCAGATTTTGTTGGTACAAAAAAATGTAGCTTGTGTTTTAGCAGGATGATACAAACTTTAAAAAATATCATATGTCATGTGTTCATATAATTGAGTTTTTTTTGGATTTGAATACCCTAACAACTGTATTAGAAGTGCCCGCTCTTCTATTATGGGGGCCCTTCAATTAGAGGAGCCTTTCTTTTTGAAACATTTTCATMAAAAATTTGTGGTTCTCAATTCAAAACTTATGAAAATTTGTCAATTTCCCCCATATATTAAGATACTTTTTTTAGCAAAAAAAGAGTCTTTCAACTAATTTCTGTAGTTTTGAAATTTCCGGAATATTTGTAACTGAAAACGGTCAGAAGTTTTTAATTTAAAACAACACATATAGAAAGAGGCCTTTCTTTTCTTCACACCCTCTCTCGGAGGGCCTTCTATTAGAGGGACTCTCCTATTAAAGGAGCCCTTCTGATACAGGTTTTACGATATGTTGGAGTTACGTTAGACCGCGAAAAAAGACAATCTGTTCACGGTTTTTCCCGAATTCCTGTTTTCCTGCTTCTGCATTCAGAAATTTCCAGATTCTTCCTTCAAAATTCTGATCGTTGACACATTGTTCTATTTTCAGAGAATCTTCTCATCCGTCATTCTCATCATCATCATTTCCATAATTTCTGCTCTCCAGACGGAACAAAAAGATTCCCTTTCTCTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGTAGCTTGTGTTTTAGC</pcr_primer_p1>
		<pcr_primer_p2>ATCTTAATATATGGGGGAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGTAGCTTGTGTTTTAGCAGGATGATACAAACTTTAAAAAATATCATATGTCATGTGTTCATATAATTGAGTTTTTTTTGGATTTGAATACCCTAACAACTGTATTAGAAGTGCCCGCTCTTCTATTATGGGGGCCCTTCAATTAGAGGAGCCTTTCTTTTTGAAACATTTTCATAAAAAATTTGTGGTTCTCAATTCAAAACTTATGAAAATTTGTCAATTTCCCCCATATATTAAGAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGTAGCTTGTGTTTTAGCAGGATGATACAAACTTTAAAAAATATCATATGTCATGTGTTCATATAATTGAGTTTTTTTTGGATTTGAATACCCTAACAACTGTATTAGAAGTGCCCGCTCTTCTATTATGGGGGCCCTTCAATTAGAGGAGCCTTTCTTTTTGAAACATTTTCATMAAAAATTTGTGGTTCTCAATTCAAAACTTATGAAAATTTGTCAATTTCCCCCATATATTAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4332</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>381028</contig_pos>
        <strand></strand>
        <context>TGGACAACGG[C/T]AGGTCAAAaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGAAAACTTCGAAGGTTTTTTTTGGGAATTAGTGTTTTTTGGACAACGG</left_flank>
        <right_flank>AGGTCAAAAAAAATATCAAAAAGTTGTCAACTCATAAATTGTTTAATAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGCTGGAGAAAACGGAGCTAACCGATTAGGAGCTAATATTATAGTGGTAGAAAAAAAGGAGGAGCTCTCTCTGGTGGGTGGGAAGAAGTGGAAAAACGGCAAGAAAGAGGAGACGAATTGCTGGGAAAATGTGAGAAATTGTGTGTTTATTTGTGGTTGTGAATCTGGTAACAACAACAAATAAATGTCTAGTTCGAAATTCTAGTTACCTAGGTGATCTTATACTTGGGAATTTCCAACATGGGAAAAGTTTCGAGATAGTGTTGTAGAGATAAAAAAGCAATAAAAAGACATCTGGGGACATCCTATGATGTTCTGCATAAGGATACAAATACCAGTTTCAGATAATTTTCTAACGTCATGAATTCAAAAAAGACTGGATGCTCTGTTTCTCGAAGAATTCCGTCGACATGTTTCTGTCGGGTATGTTCGGAACTGTTTTGAAATTTCGAAAACTTCGAAGGTTTTTTTTGGGAATTAGTGTTTTTTGGACAACGGCAGGTCAAAAAAAATATCAAAAAGTTGTCAACTCATAAATTGTTTAATAAAATATCCCAATAATTTATCAGTTGACACATTTTCATATCTCTTATAGGAATGAAAGTAGCGGAGCTCAAACTTTAAAGTGTGAGGGACCATCTATTACTGTTCTATGAAATTTTCTTTTTGAATTTTCGAAGTCTTCTTGTTAATTTTTCATCAATTTTAGGCGCTTTTATGATGGGAAAATAAGATTTTTATTATACAGTATAATTGTTCCCCAAGTTTTGAAAATCGGATTTTCCCGAAATTCCGATTTTCCAAAACTTTCAAAATCGCAATTTCCGACATTCCGAACATTCCTGGTTTCTATAAAAGAGTTCTTGATGATAATATCGCGTAAAGACTATGTATACCGTATAGCCTTCAATGAAGGACCCCCTGATTTTGAACTTTGAACCCATTAATCTTGGTTCTGGTCAAATATATGAAAACGTTTTTAACTGATAAATTGTTTAT</canonical>
            <polymorphic>CTGCTGGAGAAAACGGAGCTAACCGATTAGGAGCTAATATTATAGTGGTAGAAAAAAAGGAGGAGCTCTCTCTGGTGGGTGGGAAGAAGTGGAAAAACGGCAAGAAAGAGGAGACGAATTGCTGGGAAAATGTGAGAAATTGTGTGTTTATTTGTGGTTGTGAATCTGGTAACAACAACAAATAAATGTCTAGTTCGAAATTCTAGTTACCTAGGTGATCTTATACTTGGGAATTTCCAACATGGGAAAAGTTTCGAGATAGTGTTGTAGAGATAAAAAAGCAATAAAAAGACATCTGGGGACATCCTATGATGTTCTGCATAAGGATACAAATACCAGTTTCAGATAATTTTCTAACGTCATGAATTCAAAAAAGACTGGATGCTCTGTTTCTCGAAGAATTCCGTCGACATGTTTCTGTCGGGTATGTTCGGAACTGTTTTGAAATTTCGAAAACTTCGAAGGTTTTTTTTGGGAATTAGTGTTTTTTGGACAACGGYAGGTCAAAAAAAATATCAAAAAGTTGTCAACTCATAAATTGTTTAATAAAATATCCCAATAATTTATCAGTTGACACATTTTCATATCTCTTATAGGAATGAAAGTAGCGGAGCTCAAACTTTAAAGTGTGAGGGACCATCTATTACTGTTCTATGAAATTTTCTTTTTGAATTTTCGAAGTCTTCTTGTTAATTTTTCATCAATTTTAGGCGCTTTTATGATGGGAAAATAAGATTTTTATTATACAGTATAATTGTTCCCCAAGTTTTGAAAATCGGATTTTCCCGAAATTCCGATTTTCCAAAACTTTCAAAATCGCAATTTCCGACATTCCGAACATTCCTGGTTTCTATAAAAGAGTTCTTGATGATAATATCGCGTAAAGACTATGTATACCGTATAGCCTTCAATGAAGGACCCCCTGATTTTGAACTTTGAACCCATTAATCTTGGTTCTGGTCAAATATATGAAAACGTTTTTAACTGATAAATTGTTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTCTGTCGGGTATGTTC</pcr_primer_p1>
		<pcr_primer_p2>CGATATTATCATCAAGAACTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>467</pcr_amplicon_size>
		<canonical_amplicon>TGTTTCTGTCGGGTATGTTCGGAACTGTTTTGAAATTTCGAAAACTTCGAAGGTTTTTTTTGGGAATTAGTGTTTTTTGGACAACGGCAGGTCAAAAAAAATATCAAAAAGTTGTCAACTCATAAATTGTTTAATAAAATATCCCAATAATTTATCAGTTGACACATTTTCATATCTCTTATAGGAATGAAAGTAGCGGAGCTCAAACTTTAAAGTGTGAGGGACCATCTATTACTGTTCTATGAAATTTTCTTTTTGAATTTTCGAAGTCTTCTTGTTAATTTTTCATCAATTTTAGGCGCTTTTATGATGGGAAAATAAGATTTTTATTATACAGTATAATTGTTCCCCAAGTTTTGAAAATCGGATTTTCCCGAAATTCCGATTTTCCAAAACTTTCAAAATCGCAATTTCCGACATTCCGAACATTCCTGGTTTCTATAAAAGAGTTCTTGATGATAATATCG</canonical_amplicon>
		<polymorphic_amplicon>TGTTTCTGTCGGGTATGTTCGGAACTGTTTTGAAATTTCGAAAACTTCGAAGGTTTTTTTTGGGAATTAGTGTTTTTTGGACAACGGYAGGTCAAAAAAAATATCAAAAAGTTGTCAACTCATAAATTGTTTAATAAAATATCCCAATAATTTATCAGTTGACACATTTTCATATCTCTTATAGGAATGAAAGTAGCGGAGCTCAAACTTTAAAGTGTGAGGGACCATCTATTACTGTTCTATGAAATTTTCTTTTTGAATTTTCGAAGTCTTCTTGTTAATTTTTCATCAATTTTAGGCGCTTTTATGATGGGAAAATAAGATTTTTATTATACAGTATAATTGTTCCCCAAGTTTTGAAAATCGGATTTTCCCGAAATTCCGATTTTCCAAAACTTTCAAAATCGCAATTTCCGACATTCCGAACATTCCTGGTTTCTATAAAAGAGTTCTTGATGATAATATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4333</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>404312</contig_pos>
        <strand></strand>
        <context>AATGAGCGAC[C/T]TTGGCAACTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGTCAATAGCAAGTTCATTGGGAAAAAAATATGAATAGAAATGAGCGAC</left_flank>
        <right_flank>TTGGCAACTATCGCAGTTTCAGCTGCTCCAGTAGATGCTGAAAAGGGAGG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGCTACTGTAGACGCCAAATAATGCCAAATCATCAAAGAGCCGATTAACAGACAAACGACTTCTGGATAATTTGTGATTCTAGCCATAACGGATCGGTCGGCGGTTTCAAAGTTACTGAACTTTTGATGAGTGTCTAAAACAAACATGATTTGAACCGTGCAATTTTTGCCTTATCCTTACTTTCTATAAAAATAAGTCCGCATTTGTATGGCCATACTAGCACCAACCCCAGCCAACATTCAAACCAAGTTCCAAAATAAAAACTGAAGCAGATTGTCATATTTTTGTGAAATTTCCTGATCTTCCATGACGTCATCACAAGGATACATGTGAAATAGGCAGATATTGATAAGAGGAAAAAGTAGATAATATTGAAAATGAGATAACTGAAATTGGTATATGCCGGATTATTGATTTCATGGATCGGAAGCCAGATAATAATATCATTGGTCAATAGCAAGTTCATTGGGAAAAAAATATGAATAGAAATGAGCGACCTTGGCAACTATCGCAGTTTCAGCTGCTCCAGTAGATGCTGAAAAGGGAGGAAAAGTGAAATGGAGTTTCTAATGGAAATGGCAAAAAGCACGTCATTGTGTGGGAGAAGAATAGCTGAATAGGCTTTGATTGATATTATAGTTCAAAATCTTCTGATGAACTCAAAAATCAGAATATATCCATACAACGTATTGGTACTCTAGGATTTATAAATTTCCTTATAGTAGTTCACCTAATAATAAAAAATGAAGTGGTGTCCGTCTTTTTCTTTTCTTCTTTGTATGTTTTCCAGAACGGAAGTTTCCCGAAGAAAAAATCCGTCAGACCAAATTTGATCTAATTTTTAAAGCGCCGTAGACGCGCCAGACGTTTGAAGTGCCAGAGGAGCGGCAACTGGTTTTATCAAATCACATTAAATTGGCCTGAAATTTTGAATCCAATGGCCAGAAACTTTAAAAATAGAACAACTGCTTTAAATTAATCATTATTTATTCAGTCTG</canonical>
            <polymorphic>CGGCTACTGTAGACGCCAAATAATGCCAAATCATCAAAGAGCCGATTAACAGACAAACGACTTCTGGATAATTTGTGATTCTAGCCATAACGGATCGGTCGGCGGTTTCAAAGTTACTGAACTTTTGATGAGTGTCTAAAACAAACATGATTTGAACCGTGCAATTTTTGCCTTATCCTTACTTTCTATAAAAATAAGTCCGCATTTGTATGGCCATACTAGCACCAACCCCAGCCAACATTCAAACCAAGTTCCAAAATAAAAACTGAAGCAGATTGTCATATTTTTGTGAAATTTCCTGATCTTCCATGACGTCATCACAAGGATACATGTGAAATAGGCAGATATTGATAAGAGGAAAAAGTAGATAATATTGAAAATGAGATAACTGAAATTGGTATATGCCGGATTATTGATTTCATGGATCGGAAGCCAGATAATAATATCATTGGTCAATAGCAAGTTCATTGGGAAAAAAATATGAATAGAAATGAGCGACYTTGGCAACTATCGCAGTTTCAGCTGCTCCAGTAGATGCTGAAAAGGGAGGAAAAGTGAAATGGAGTTTCTAATGGAAATGGCAAAAAGCACGTCATTGTGTGGGAGAAGAATAGCTGAATAGGCTTTGATTGATATTATAGTTCAAAATCTTCTGATGAACTCAAAAATCAGAATATATCCATACAACGTATTGGTACTCTAGGATTTATAAATTTCCTTATAGTAGTTCACCTAATAATAAAAAATGAAGTGGTGTCCGTCTTTTTCTTTTCTTCTTTGTATGTTTTCCAGAACGGAAGTTTCCCGAAGAAAAAATCCGTCAGACCAAATTTGATCTAATTTTTAAAGCGCCGTAGACGCGCCAGACGTTTGAAGTGCCAGAGGAGCGGCAACTGGTTTTATCAAATCACATTAAATTGGCCTGAAATTTTGAATCCAATGGCCAGAAACTTTAAAAATAGAACAACTGCTTTAAATTAATCATTATTTATTCAGTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAATAGGCAGATATTGATAAGA</pcr_primer_p1>
		<pcr_primer_p2>CATTAGAAACTCCATTTCACTTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TGAAATAGGCAGATATTGATAAGAGGAAAAAGTAGATAATATTGAAAATGAGATAACTGAAATTGGTATATGCCGGATTATTGATTTCATGGATCGGAAGCCAGATAATAATATCATTGGTCAATAGCAAGTTCATTGGGAAAAAAATATGAATAGAAATGAGCGACCTTGGCAACTATCGCAGTTTCAGCTGCTCCAGTAGATGCTGAAAAGGGAGGAAAAGTGAAATGGAGTTTCTAATG</canonical_amplicon>
		<polymorphic_amplicon>TGAAATAGGCAGATATTGATAAGAGGAAAAAGTAGATAATATTGAAAATGAGATAACTGAAATTGGTATATGCCGGATTATTGATTTCATGGATCGGAAGCCAGATAATAATATCATTGGTCAATAGCAAGTTCATTGGGAAAAAAATATGAATAGAAATGAGCGACYTTGGCAACTATCGCAGTTTCAGCTGCTCCAGTAGATGCTGAAAAGGGAGGAAAAGTGAAATGGAGTTTCTAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4334</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>404450</contig_pos>
        <strand></strand>
        <context>GATTGATATT[A/T]TAGTTCAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCACGTCATTGTGTGGGAGAAGAATAGCTGAATAGGCTTTGATTGATATT</left_flank>
        <right_flank>TAGTTCAAAATCTTCTGATGAACTCAAAAATCAGAATATATCCATACAAC</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACAAACATGATTTGAACCGTGCAATTTTTGCCTTATCCTTACTTTCTATAAAAATAAGTCCGCATTTGTATGGCCATACTAGCACCAACCCCAGCCAACATTCAAACCAAGTTCCAAAATAAAAACTGAAGCAGATTGTCATATTTTTGTGAAATTTCCTGATCTTCCATGACGTCATCACAAGGATACATGTGAAATAGGCAGATATTGATAAGAGGAAAAAGTAGATAATATTGAAAATGAGATAACTGAAATTGGTATATGCCGGATTATTGATTTCATGGATCGGAAGCCAGATAATAATATCATTGGTCAATAGCAAGTTCATTGGGAAAAAAATATGAATAGAAATGAGCGACCTTGGCAACTATCGCAGTTTCAGCTGCTCCAGTAGATGCTGAAAAGGGAGGAAAAGTGAAATGGAGTTTCTAATGGAAATGGCAAAAAGCACGTCATTGTGTGGGAGAAGAATAGCTGAATAGGCTTTGATTGATATTATAGTTCAAAATCTTCTGATGAACTCAAAAATCAGAATATATCCATACAACGTATTGGTACTCTAGGATTTATAAATTTCCTTATAGTAGTTCACCTAATAATAAAAAATGAAGTGGTGTCCGTCTTTTTCTTTTCTTCTTTGTATGTTTTCCAGAACGGAAGTTTCCCGAAGAAAAAATCCGTCAGACCAAATTTGATCTAATTTTTAAAGCGCCGTAGACGCGCCAGACGTTTGAAGTGCCAGAGGAGCGGCAACTGGTTTTATCAAATCACATTAAATTGGCCTGAAATTTTGAATCCAATGGCCAGAAACTTTAAAAATAGAACAACTGCTTTAAATTAATCATTATTTATTCAGTCTGAAAAAATTAGAATTCGTCATTGAACCCAAAGAACGGATGATCTCCATCTCTGGGTGACGGATCCACAAGTCTCCATCCACGATTCAACTCATCGATCGATTTCATCTCTTCTGCAGTCAATTTGAAATCGAAAACCGA</canonical>
            <polymorphic>AAACAAACATGATTTGAACCGTGCAATTTTTGCCTTATCCTTACTTTCTATAAAAATAAGTCCGCATTTGTATGGCCATACTAGCACCAACCCCAGCCAACATTCAAACCAAGTTCCAAAATAAAAACTGAAGCAGATTGTCATATTTTTGTGAAATTTCCTGATCTTCCATGACGTCATCACAAGGATACATGTGAAATAGGCAGATATTGATAAGAGGAAAAAGTAGATAATATTGAAAATGAGATAACTGAAATTGGTATATGCCGGATTATTGATTTCATGGATCGGAAGCCAGATAATAATATCATTGGTCAATAGCAAGTTCATTGGGAAAAAAATATGAATAGAAATGAGCGACCTTGGCAACTATCGCAGTTTCAGCTGCTCCAGTAGATGCTGAAAAGGGAGGAAAAGTGAAATGGAGTTTCTAATGGAAATGGCAAAAAGCACGTCATTGTGTGGGAGAAGAATAGCTGAATAGGCTTTGATTGATATTWTAGTTCAAAATCTTCTGATGAACTCAAAAATCAGAATATATCCATACAACGTATTGGTACTCTAGGATTTATAAATTTCCTTATAGTAGTTCACCTAATAATAAAAAATGAAGTGGTGTCCGTCTTTTTCTTTTCTTCTTTGTATGTTTTCCAGAACGGAAGTTTCCCGAAGAAAAAATCCGTCAGACCAAATTTGATCTAATTTTTAAAGCGCCGTAGACGCGCCAGACGTTTGAAGTGCCAGAGGAGCGGCAACTGGTTTTATCAAATCACATTAAATTGGCCTGAAATTTTGAATCCAATGGCCAGAAACTTTAAAAATAGAACAACTGCTTTAAATTAATCATTATTTATTCAGTCTGAAAAAATTAGAATTCGTCATTGAACCCAAAGAACGGATGATCTCCATCTCTGGGTGACGGATCCACAAGTCTCCATCCACGATTCAACTCATCGATCGATTTCATCTCTTCTGCAGTCAATTTGAAATCGAAAACCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCCAGTAGATGCTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAAAAGACGGACACCACT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GCTCCAGTAGATGCTGAAAAGGGAGGAAAAGTGAAATGGAGTTTCTAATGGAAATGGCAAAAAGCACGTCATTGTGTGGGAGAAGAATAGCTGAATAGGCTTTGATTGATATTATAGTTCAAAATCTTCTGATGAACTCAAAAATCAGAATATATCCATACAACGTATTGGTACTCTAGGATTTATAAATTTCCTTATAGTAGTTCACCTAATAATAAAAAATGAAGTGGTGTCCGTCTTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>GCTCCAGTAGATGCTGAAAAGGGAGGAAAAGTGAAATGGAGTTTCTAATGGAAATGGCAAAAAGCACGTCATTGTGTGGGAGAAGAATAGCTGAATAGGCTTTGATTGATATTWTAGTTCAAAATCTTCTGATGAACTCAAAAATCAGAATATATCCATACAACGTATTGGTACTCTAGGATTTATAAATTTCCTTATAGTAGTTCACCTAATAATAAAAAATGAAGTGGTGTCCGTCTTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4335</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>404493</contig_pos>
        <strand></strand>
        <context>AGAATATATC[C/T]ATACAAMGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGATATTATAGTTCAAAATCTTCTGATGAACTCAAAAATCAGAATATATC</left_flank>
        <right_flank>ATACAACGTATTGGTACTCTAGGATTTATAAATTTCCTTATAGTAGTTCA</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTCTATAAAAATAAGTCCGCATTTGTATGGCCATACTAGCACCAACCCCAGCCAACATTCAAACCAAGTTCCAAAATAAAAACTGAAGCAGATTGTCATATTTTTGTGAAATTTCCTGATCTTCCATGACGTCATCACAAGGATACATGTGAAATAGGCAGATATTGATAAGAGGAAAAAGTAGATAATATTGAAAATGAGATAACTGAAATTGGTATATGCCGGATTATTGATTTCATGGATCGGAAGCCAGATAATAATATCATTGGTCAATAGCAAGTTCATTGGGAAAAAAATATGAATAGAAATGAGCGACCTTGGCAACTATCGCAGTTTCAGCTGCTCCAGTAGATGCTGAAAAGGGAGGAAAAGTGAAATGGAGTTTCTAATGGAAATGGCAAAAAGCACGTCATTGTGTGGGAGAAGAATAGCTGAATAGGCTTTGATTGATATTATAGTTCAAAATCTTCTGATGAACTCAAAAATCAGAATATATCCATACAACGTATTGGTACTCTAGGATTTATAAATTTCCTTATAGTAGTTCACCTAATAATAAAAAATGAAGTGGTGTCCGTCTTTTTCTTTTCTTCTTTGTATGTTTTCCAGAACGGAAGTTTCCCGAAGAAAAAATCCGTCAGACCAAATTTGATCTAATTTTTAAAGCGCCGTAGACGCGCCAGACGTTTGAAGTGCCAGAGGAGCGGCAACTGGTTTTATCAAATCACATTAAATTGGCCTGAAATTTTGAATCCAATGGCCAGAAACTTTAAAAATAGAACAACTGCTTTAAATTAATCATTATTTATTCAGTCTGAAAAAATTAGAATTCGTCATTGAACCCAAAGAACGGATGATCTCCATCTCTGGGTGACGGATCCACAAGTCTCCATCCACGATTCAACTCATCGATCGATTTCATCTCTTCTGCAGTCAATTTGAAATCGAAAACCGAGAAGTTTTCGAGGATTCTTTCTGTAAAAAAAATAAAGTCGAAT</canonical>
            <polymorphic>CTTTCTATAAAAATAAGTCCGCATTTGTATGGCCATACTAGCACCAACCCCAGCCAACATTCAAACCAAGTTCCAAAATAAAAACTGAAGCAGATTGTCATATTTTTGTGAAATTTCCTGATCTTCCATGACGTCATCACAAGGATACATGTGAAATAGGCAGATATTGATAAGAGGAAAAAGTAGATAATATTGAAAATGAGATAACTGAAATTGGTATATGCCGGATTATTGATTTCATGGATCGGAAGCCAGATAATAATATCATTGGTCAATAGCAAGTTCATTGGGAAAAAAATATGAATAGAAATGAGCGACCTTGGCAACTATCGCAGTTTCAGCTGCTCCAGTAGATGCTGAAAAGGGAGGAAAAGTGAAATGGAGTTTCTAATGGAAATGGCAAAAAGCACGTCATTGTGTGGGAGAAGAATAGCTGAATAGGCTTTGATTGATATTATAGTTCAAAATCTTCTGATGAACTCAAAAATCAGAATATATCYATACAACGTATTGGTACTCTAGGATTTATAAATTTCCTTATAGTAGTTCACCTAATAATAAAAAATGAAGTGGTGTCCGTCTTTTTCTTTTCTTCTTTGTATGTTTTCCAGAACGGAAGTTTCCCGAAGAAAAAATCCGTCAGACCAAATTTGATCTAATTTTTAAAGCGCCGTAGACGCGCCAGACGTTTGAAGTGCCAGAGGAGCGGCAACTGGTTTTATCAAATCACATTAAATTGGCCTGAAATTTTGAATCCAATGGCCAGAAACTTTAAAAATAGAACAACTGCTTTAAATTAATCATTATTTATTCAGTCTGAAAAAATTAGAATTCGTCATTGAACCCAAAGAACGGATGATCTCCATCTCTGGGTGACGGATCCACAAGTCTCCATCCACGATTCAACTCATCGATCGATTTCATCTCTTCTGCAGTCAATTTGAAATCGAAAACCGAGAAGTTTTCGAGGATTCTTTCTGTAAAAAAAATAAAGTCGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCCAGTAGATGCTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAAAAGACGGACACCACT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GCTCCAGTAGATGCTGAAAAGGGAGGAAAAGTGAAATGGAGTTTCTAATGGAAATGGCAAAAAGCACGTCATTGTGTGGGAGAAGAATAGCTGAATAGGCTTTGATTGATATTATAGTTCAAAATCTTCTGATGAACTCAAAAATCAGAATATATCCATACAACGTATTGGTACTCTAGGATTTATAAATTTCCTTATAGTAGTTCACCTAATAATAAAAAATGAAGTGGTGTCCGTCTTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>GCTCCAGTAGATGCTGAAAAGGGAGGAAAAGTGAAATGGAGTTTCTAATGGAAATGGCAAAAAGCACGTCATTGTGTGGGAGAAGAATAGCTGAATAGGCTTTGATTGATATTATAGTTCAAAATCTTCTGATGAACTCAAAAATCAGAATATATCYATACAACGTATTGGTACTCTAGGATTTATAAATTTCCTTATAGTAGTTCACCTAATAATAAAAAATGAAGTGGTGTCCGTCTTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4336</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>404500</contig_pos>
        <strand></strand>
        <context>ATCYATACAA[C/A]GTATTGGTAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATAGTTCAAAATCTTCTGATGAACTCAAAAATCAGAATATATCCATACAA</left_flank>
        <right_flank>GTATTGGTACTCTAGGATTTATAAATTTCCTTATAGTAGTTCACCTAATA</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAAATAAGTCCGCATTTGTATGGCCATACTAGCACCAACCCCAGCCAACATTCAAACCAAGTTCCAAAATAAAAACTGAAGCAGATTGTCATATTTTTGTGAAATTTCCTGATCTTCCATGACGTCATCACAAGGATACATGTGAAATAGGCAGATATTGATAAGAGGAAAAAGTAGATAATATTGAAAATGAGATAACTGAAATTGGTATATGCCGGATTATTGATTTCATGGATCGGAAGCCAGATAATAATATCATTGGTCAATAGCAAGTTCATTGGGAAAAAAATATGAATAGAAATGAGCGACCTTGGCAACTATCGCAGTTTCAGCTGCTCCAGTAGATGCTGAAAAGGGAGGAAAAGTGAAATGGAGTTTCTAATGGAAATGGCAAAAAGCACGTCATTGTGTGGGAGAAGAATAGCTGAATAGGCTTTGATTGATATTATAGTTCAAAATCTTCTGATGAACTCAAAAATCAGAATATATCCATACAACGTATTGGTACTCTAGGATTTATAAATTTCCTTATAGTAGTTCACCTAATAATAAAAAATGAAGTGGTGTCCGTCTTTTTCTTTTCTTCTTTGTATGTTTTCCAGAACGGAAGTTTCCCGAAGAAAAAATCCGTCAGACCAAATTTGATCTAATTTTTAAAGCGCCGTAGACGCGCCAGACGTTTGAAGTGCCAGAGGAGCGGCAACTGGTTTTATCAAATCACATTAAATTGGCCTGAAATTTTGAATCCAATGGCCAGAAACTTTAAAAATAGAACAACTGCTTTAAATTAATCATTATTTATTCAGTCTGAAAAAATTAGAATTCGTCATTGAACCCAAAGAACGGATGATCTCCATCTCTGGGTGACGGATCCACAAGTCTCCATCCACGATTCAACTCATCGATCGATTTCATCTCTTCTGCAGTCAATTTGAAATCGAAAACCGAGAAGTTTTCGAGGATTCTTTCTGTAAAAAAAATAAAGTCGAATCACAAAT</canonical>
            <polymorphic>TAAAAATAAGTCCGCATTTGTATGGCCATACTAGCACCAACCCCAGCCAACATTCAAACCAAGTTCCAAAATAAAAACTGAAGCAGATTGTCATATTTTTGTGAAATTTCCTGATCTTCCATGACGTCATCACAAGGATACATGTGAAATAGGCAGATATTGATAAGAGGAAAAAGTAGATAATATTGAAAATGAGATAACTGAAATTGGTATATGCCGGATTATTGATTTCATGGATCGGAAGCCAGATAATAATATCATTGGTCAATAGCAAGTTCATTGGGAAAAAAATATGAATAGAAATGAGCGACCTTGGCAACTATCGCAGTTTCAGCTGCTCCAGTAGATGCTGAAAAGGGAGGAAAAGTGAAATGGAGTTTCTAATGGAAATGGCAAAAAGCACGTCATTGTGTGGGAGAAGAATAGCTGAATAGGCTTTGATTGATATTATAGTTCAAAATCTTCTGATGAACTCAAAAATCAGAATATATCCATACAAMGTATTGGTACTCTAGGATTTATAAATTTCCTTATAGTAGTTCACCTAATAATAAAAAATGAAGTGGTGTCCGTCTTTTTCTTTTCTTCTTTGTATGTTTTCCAGAACGGAAGTTTCCCGAAGAAAAAATCCGTCAGACCAAATTTGATCTAATTTTTAAAGCGCCGTAGACGCGCCAGACGTTTGAAGTGCCAGAGGAGCGGCAACTGGTTTTATCAAATCACATTAAATTGGCCTGAAATTTTGAATCCAATGGCCAGAAACTTTAAAAATAGAACAACTGCTTTAAATTAATCATTATTTATTCAGTCTGAAAAAATTAGAATTCGTCATTGAACCCAAAGAACGGATGATCTCCATCTCTGGGTGACGGATCCACAAGTCTCCATCCACGATTCAACTCATCGATCGATTTCATCTCTTCTGCAGTCAATTTGAAATCGAAAACCGAGAAGTTTTCGAGGATTCTTTCTGTAAAAAAAATAAAGTCGAATCACAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>321 278 180 124 97</canonical_bands>
                <polymorphic_bands>321 278 277 124</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTCCAGTAGATGCTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAAAAGACGGACACCACT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GCTCCAGTAGATGCTGAAAAGGGAGGAAAAGTGAAATGGAGTTTCTAATGGAAATGGCAAAAAGCACGTCATTGTGTGGGAGAAGAATAGCTGAATAGGCTTTGATTGATATTATAGTTCAAAATCTTCTGATGAACTCAAAAATCAGAATATATCCATACAACGTATTGGTACTCTAGGATTTATAAATTTCCTTATAGTAGTTCACCTAATAATAAAAAATGAAGTGGTGTCCGTCTTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>GCTCCAGTAGATGCTGAAAAGGGAGGAAAAGTGAAATGGAGTTTCTAATGGAAATGGCAAAAAGCACGTCATTGTGTGGGAGAAGAATAGCTGAATAGGCTTTGATTGATATTATAGTTCAAAATCTTCTGATGAACTCAAAAATCAGAATATATCCATACAAMGTATTGGTACTCTAGGATTTATAAATTTCCTTATAGTAGTTCACCTAATAATAAAAAATGAAGTGGTGTCCGTCTTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4337</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>408261</contig_pos>
        <strand>+</strand>
        <context>CATGTCTCCA[G/T]GTAGTCGATA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCTGACTTTTCCTGTTTGATGAGCTTCTTCCAAAGCTTCCCATGTCTCCA</left_flank>
        <right_flank>GTAGTCGATATTCGAAAATATTGGTTTTCCATCGTTTCCCCGAGGAAACA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAGTTCTGTCGAATTCTTTCTGAAAGAAGGAAATTTAGTTATCTTTTAGAAAAAAAAGTTGCTTACTGTTTTCATTGGATTTTATCAGAGCAACGAGACCAAGATCGAGGATCCAACGAATGAGAACTTGGGTGACAGTCTGAAAATCACAGAATTTAGAAAAATGTATTTTTATAAAATGGTTACCTTTCCATGATTTTTCGCAATACTGATCAATGTTTCGTCGAACAGCAAGTTTGGATCTTCATATTTTCGATAAAAAGTGGATCCAGGATTTCCGGTTATCATCATTGCAGTAATCATAATGTTTCTCGCTTTACAGTAGTTAATTACATCTTTTTGAGTGAAGTATGGATTGATTTCGGCTTGTAACACGGACGGTTTGACGGTTCCTTTTGTGTAAATACGATCCAGTTGGGATAAATTGAAATTGGCAACTCCAATCGACCTGACTTTTCCTGTTTGATGAGCTTCTTCCAAAGCTTCCCATGTCTCCAGGTAGTCGATATTCGAAAATATTGGTTTTCCATCGTTTCCCCGAGGAAACATCCCATCATCTTCCGCCCAACCGTATGGCCAGTGAATGACGATCAAATCCATGTATGGTGTATCGAGCATCTGAAGCATCTCGTCGATTTGCTCGGTGGCTTTTGCTTTTGAGTGATGTGTATTCCAGATTTTTGCTGATAAGAAAATTTCGTCTCTCTGAAAATGGTTCACCCTAATCACAAGAAATACAATCGAACGATTCTTACTTGAAATTTTCGAACTTTCATCCAATCTCTGATTGATTCAAAAATCTCTGTTGTATTATTGAAGCCGTGTGCCATATCAATATGACGGTATCCGAATTCCAGTGCTTCCCGTACTTGTTCCGCGGCTGTACTCTTTGGAATTTGCCACGTTCCATATCCAATCACTGGCATTTCGTAGCCAGATGAAAGCAAAACTTTTTCCGCGATACGCATTGGTTCTTCTGGTTTTGAACTGAAAATTAA</canonical>
            <polymorphic>TGAAGTTCTGTCGAATTCTTTCTGAAAGAAGGAAATTTAGTTATCTTTTAGAAAAAAAAGTTGCTTACTGTTTTCATTGGATTTTATCAGAGCAACGAGACCAAGATCGAGGATCCAACGAATGAGAACTTGGGTGACAGTCTGAAAATCACAGAATTTAGAAAAATGTATTTTTATAAAATGGTTACCTTTCCATGATTTTTCGCAATACTGATCAATGTTTCGTCGAACAGCAAGTTTGGATCTTCATATTTTCGATAAAAAGTGGATCCAGGATTTCCGGTTATCATCATTGCAGTAATCATAATGTTTCTCGCTTTACAGTAGTTAATTACATCTTTTTGAGTGAAGTATGGATTGATTTCGGCTTGTAACACGGACGGTTTGACGGTTCCTTTTGTGTAAATACGATCCAGTTGGGATAAATTGAAATTGGCAACTCCAATCGACCTGACTTTTCCTGTTTGATGAGCTTCTTCCAAAGCTTCCCATGTCTCCAKGTAGTCGATATTCGAAAATATTGGTTTTCCATCGTTTCCCCGAGGAAACATCCCATCATCTTCCGCCCAACCGTATGGCCAGTGAATGACGATCAAATCCATGTATGGTGTATCGAGCATCTGAAGCATCTCGTCGATTTGCTCGGTGGCTTTTGCTTTTGAGTGATGTGTATTCCAGATTTTTGCTGATAAGAAAATTTCGTCTCTCTGAAAATGGTTCACCCTAATCACAAGAAATACAATCGAACGATTCTTACTTGAAATTTTCGAACTTTCATCCAATCTCTGATTGATTCAAAAATCTCTGTTGTATTATTGAAGCCGTGTGCCATATCAATATGACGGTATCCGAATTCCAGTGCTTCCCGTACTTGTTCCGCGGCTGTACTCTTTGGAATTTGCCACGTTCCATATCCAATCACTGGCATTTCGTAGCCAGATGAAAGCAAAACTTTTTCCGCGATACGCATTGGTTCTTCTGGTTTTGAACTGAAAATTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>502 272 226</canonical_bands>
                <polymorphic_bands>728 272</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>502 272 226</canonical_bands>
                <polymorphic_bands>728 272</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCTGACTTTTCCTGTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>TTATCAGCAAAAATCTGGAATAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACCTGACTTTTCCTGTTTGATGAGCTTCTTCCAAAGCTTCCCATGTCTCCAGGTAGTCGATATTCGAAAATATTGGTTTTCCATCGTTTCCCCGAGGAAACATCCCATCATCTTCCGCCCAACCGTATGGCCAGTGAATGACGATCAAATCCATGTATGGTGTATCGAGCATCTGAAGCATCTCGTCGATTTGCTCGGTGGCTTTTGCTTTTGAGTGATGTGTATTCCAGATTTTTGCTGATAA</canonical_amplicon>
		<polymorphic_amplicon>ACCTGACTTTTCCTGTTTGATGAGCTTCTTCCAAAGCTTCCCATGTCTCCAKGTAGTCGATATTCGAAAATATTGGTTTTCCATCGTTTCCCCGAGGAAACATCCCATCATCTTCCGCCCAACCGTATGGCCAGTGAATGACGATCAAATCCATGTATGGTGTATCGAGCATCTGAAGCATCTCGTCGATTTGCTCGGTGGCTTTTGCTTTTGAGTGATGTGTATTCCAGATTTTTGCTGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4338</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>103404</contig_pos>
        <strand>+</strand>
        <context>ATAGAGCGCG[C/T]TTTCCAGGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGATTGCAACCTATTCGGTAAGTGAGGTAGATTAATCTCAATAGAGCGCG</left_flank>
        <right_flank>TTTCCAGGAGGTCTCTTCCGAAGTAATGCTTCGCTCATGGTTGGGAACCC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCGTTTTTTGAGGTTAGTTTATACAAAACATTGGGTTCAAATGATTGAAAATGATCTTGAATCAATTAGGAACATTTTCATTTTTTAAATTCTAAGTCGAAAAAGTCAAGAGACCTAACCGCGTAGCTCCAGACTTTTTGATTGGGTTTTTTTTAGAAATCCCGAATCGGAGAATACCTTGTTGCTGGCCGTTGCGCTGTTATTGGTTCCACCTATGGAGTCCTAAATTCTCATTTTGTTTATCGATTTTTGTCCCTGAAAAATCATCACTTCGTAACCGAGTACTTTAATCCTTACGGTTTGATTTTATCAGCAGTCTGGGTCCTTTTCCACTATTTATCCTGGTCTGTAATAGCCGATCATACAATGCTACCCGACTTGGAATCCCGGAACTATGCGAGAGAATCATTTGAAAAGGTTTATGGGAATATGGAAAATCTCAGTATGAAGATTGCAACCTATTCGGTAAGTGAGGTAGATTAATCTCAATAGAGCGCGCTTTCCAGGAGGTCTCTTCCGAAGTAATGCTTCGCTCATGGTTGGGAACCCTTTGGGTGACAATTTTATCATCTTATTCTATTATTTTATATTTTGTGCTGGGTTACAAGGTGAGACAGCGTTCTTGAGTAAATTCATGAGCAAGAAATACGAAAAACAATAATTACGGTCATAACGGACTAACAGCTATCATAACAATATCATAATGGCTCACTGACGGCCCAGCGAGCATTTGATGAGCCTATGACATGTTAAGAAAACCAAAGGTTTCCAGATAATGACCAGTTTAAGCCACGGATTGGACTATATGAGTGCACGGACCCTTCAAATGCAGAGAAGATTGTTTTGGGCGTTGGCCATTCAAACAGTTATTCCAATTGTTGTCAGTTTTATGCCAACTGTTTTTGTACTGTATGGAGCCGCATTTGGTTTTGACGTTTTTGGGTTTGTAATTTGGAAAATTAAAGATTGGTAACTTAAAAAAATATTTTCAGTTGGATA</canonical>
            <polymorphic>TCCGTTTTTTGAGGTTAGTTTATACAAAACATTGGGTTCAAATGATTGAAAATGATCTTGAATCAATTAGGAACATTTTCATTTTTTAAATTCTAAGTCGAAAAAGTCAAGAGACCTAACCGCGTAGCTCCAGACTTTTTGATTGGGTTTTTTTTAGAAATCCCGAATCGGAGAATACCTTGTTGCTGGCCGTTGCGCTGTTATTGGTTCCACCTATGGAGTCCTAAATTCTCATTTTGTTTATCGATTTTTGTCCCTGAAAAATCATCACTTCGTAACCGAGTACTTTAATCCTTACGGTTTGATTTTATCAGCAGTCTGGGTCCTTTTCCACTATTTATCCTGGTCTGTAATAGCCGATCATACAATGCTACCCGACTTGGAATCCCGGAACTATGCGAGAGAATCATTTGAAAAGGTTTATGGGAATATGGAAAATCTCAGTATGAAGATTGCAACCTATTCGGTAAGTGAGGTAGATTAATCTCAATAGAGCGCGYTTTCCAGGAGGTCTCTTCCGAAGTAATGCTTCGCTCATGGTTGGGAACCCTTTGGGTGACAATTTTATCATCTTATTCTATTATTTTATATTTTGTGCTGGGTTACAAGGTGAGACAGCGTTCTTGAGTAAATTCATGAGCAAGAAATACGAAAAACAATAATTACGGTCATAACGGACTAACAGCTATCATAACAATATCATAATGGCTCACTGACGGCCCAGCGAGCATTTGATGAGCCTATGACATGTTAAGAAAACCAAAGGTTTCCAGATAATGACCAGTTTAAGCCACGGATTGGACTATATGAGTGCACGGACCCTTCAAATGCAGAGAAGATTGTTTTGGGCGTTGGCCATTCAAACAGTTATTCCAATTGTTGTCAGTTTTATGCCAACTGTTTTTGTACTGTATGGAGCCGCATTTGGTTTTGACGTTTTTGGGTTTGTAATTTGGAAAATTAAAGATTGGTAACTTAAAAAAATATTTTCAGTTGGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 300 197 2</canonical_bands>
                <polymorphic_bands>503 300 197</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGCGC</site>
                <isoschizomers>
                    <enzyme>BsePI</enzyme>
                    <enzyme>BssHII</enzyme>
                    <enzyme>PauI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>310 274 229 187</canonical_bands>
                <polymorphic_bands>539 274 187</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTATGGGAATATGGAAAATCT</pcr_primer_p1>
		<pcr_primer_p2>GACCGTAATTATTGTTTTTCGTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GTTTATGGGAATATGGAAAATCTCAGTATGAAGATTGCAACCTATTCGGTAAGTGAGGTAGATTAATCTCAATAGAGCGCGCTTTCCAGGAGGTCTCTTCCGAAGTAATGCTTCGCTCATGGTTGGGAACCCTTTGGGTGACAATTTTATCATCTTATTCTATTATTTTATATTTTGTGCTGGGTTACAAGGTGAGACAGCGTTCTTGAGTAAATTCATGAGCAAGAAATACGAAAAACAATAATTACGGTC</canonical_amplicon>
		<polymorphic_amplicon>GTTTATGGGAATATGGAAAATCTCAGTATGAAGATTGCAACCTATTCGGTAAGTGAGGTAGATTAATCTCAATAGAGCGCGYTTTCCAGGAGGTCTCTTCCGAAGTAATGCTTCGCTCATGGTTGGGAACCCTTTGGGTGACAATTTTATCATCTTATTCTATTATTTTATATTTTGTGCTGGGTTACAAGGTGAGACAGCGTTCTTGAGTAAATTCATGAGCAAGAAATACGAAAAACAATAATTACGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4339</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>103424</contig_pos>
        <strand>+</strand>
        <context>GGTCTCTTCC[A/G]AAGTAATGCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTGAGGTAGATTAATCTCAATAGAGCGCGCTTTCCAGGAGGTCTCTTCC</left_flank>
        <right_flank>AAGTAATGCTTCGCTCATGGTTGGGAACCCTTTGGGTGACAATTTTATCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATACAAAACATTGGGTTCAAATGATTGAAAATGATCTTGAATCAATTAGGAACATTTTCATTTTTTAAATTCTAAGTCGAAAAAGTCAAGAGACCTAACCGCGTAGCTCCAGACTTTTTGATTGGGTTTTTTTTAGAAATCCCGAATCGGAGAATACCTTGTTGCTGGCCGTTGCGCTGTTATTGGTTCCACCTATGGAGTCCTAAATTCTCATTTTGTTTATCGATTTTTGTCCCTGAAAAATCATCACTTCGTAACCGAGTACTTTAATCCTTACGGTTTGATTTTATCAGCAGTCTGGGTCCTTTTCCACTATTTATCCTGGTCTGTAATAGCCGATCATACAATGCTACCCGACTTGGAATCCCGGAACTATGCGAGAGAATCATTTGAAAAGGTTTATGGGAATATGGAAAATCTCAGTATGAAGATTGCAACCTATTCGGTAAGTGAGGTAGATTAATCTCAATAGAGCGCGCTTTCCAGGAGGTCTCTTCCGAAGTAATGCTTCGCTCATGGTTGGGAACCCTTTGGGTGACAATTTTATCATCTTATTCTATTATTTTATATTTTGTGCTGGGTTACAAGGTGAGACAGCGTTCTTGAGTAAATTCATGAGCAAGAAATACGAAAAACAATAATTACGGTCATAACGGACTAACAGCTATCATAACAATATCATAATGGCTCACTGACGGCCCAGCGAGCATTTGATGAGCCTATGACATGTTAAGAAAACCAAAGGTTTCCAGATAATGACCAGTTTAAGCCACGGATTGGACTATATGAGTGCACGGACCCTTCAAATGCAGAGAAGATTGTTTTGGGCGTTGGCCATTCAAACAGTTATTCCAATTGTTGTCAGTTTTATGCCAACTGTTTTTGTACTGTATGGAGCCGCATTTGGTTTTGACGTTTTTGGGTTTGTAATTTGGAAAATTAAAGATTGGTAACTTAAAAAAATATTTTCAGTTGGATAAATTGGGTGTCCGCAATTGC</canonical>
            <polymorphic>TATACAAAACATTGGGTTCAAATGATTGAAAATGATCTTGAATCAATTAGGAACATTTTCATTTTTTAAATTCTAAGTCGAAAAAGTCAAGAGACCTAACCGCGTAGCTCCAGACTTTTTGATTGGGTTTTTTTTAGAAATCCCGAATCGGAGAATACCTTGTTGCTGGCCGTTGCGCTGTTATTGGTTCCACCTATGGAGTCCTAAATTCTCATTTTGTTTATCGATTTTTGTCCCTGAAAAATCATCACTTCGTAACCGAGTACTTTAATCCTTACGGTTTGATTTTATCAGCAGTCTGGGTCCTTTTCCACTATTTATCCTGGTCTGTAATAGCCGATCATACAATGCTACCCGACTTGGAATCCCGGAACTATGCGAGAGAATCATTTGAAAAGGTTTATGGGAATATGGAAAATCTCAGTATGAAGATTGCAACCTATTCGGTAAGTGAGGTAGATTAATCTCAATAGAGCGCGCTTTCCAGGAGGTCTCTTCCRAAGTAATGCTTCGCTCATGGTTGGGAACCCTTTGGGTGACAATTTTATCATCTTATTCTATTATTTTATATTTTGTGCTGGGTTACAAGGTGAGACAGCGTTCTTGAGTAAATTCATGAGCAAGAAATACGAAAAACAATAATTACGGTCATAACGGACTAACAGCTATCATAACAATATCATAATGGCTCACTGACGGCCCAGCGAGCATTTGATGAGCCTATGACATGTTAAGAAAACCAAAGGTTTCCAGATAATGACCAGTTTAAGCCACGGATTGGACTATATGAGTGCACGGACCCTTCAAATGCAGAGAAGATTGTTTTGGGCGTTGGCCATTCAAACAGTTATTCCAATTGTTGTCAGTTTTATGCCAACTGTTTTTGTACTGTATGGAGCCGCATTTGGTTTTGACGTTTTTGGGTTTGTAATTTGGAAAATTAAAGATTGGTAACTTAAAAAAATATTTTCAGTTGGATAAATTGGGTGTCCGCAATTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>501 349 150</canonical_bands>
                <polymorphic_bands>850 150</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTATGGGAATATGGAAAATCT</pcr_primer_p1>
		<pcr_primer_p2>GACCGTAATTATTGTTTTTCGTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GTTTATGGGAATATGGAAAATCTCAGTATGAAGATTGCAACCTATTCGGTAAGTGAGGTAGATTAATCTCAATAGAGCGCGCTTTCCAGGAGGTCTCTTCCGAAGTAATGCTTCGCTCATGGTTGGGAACCCTTTGGGTGACAATTTTATCATCTTATTCTATTATTTTATATTTTGTGCTGGGTTACAAGGTGAGACAGCGTTCTTGAGTAAATTCATGAGCAAGAAATACGAAAAACAATAATTACGGTC</canonical_amplicon>
		<polymorphic_amplicon>GTTTATGGGAATATGGAAAATCTCAGTATGAAGATTGCAACCTATTCGGTAAGTGAGGTAGATTAATCTCAATAGAGCGCGCTTTCCAGGAGGTCTCTTCCRAAGTAATGCTTCGCTCATGGTTGGGAACCCTTTGGGTGACAATTTTATCATCTTATTCTATTATTTTATATTTTGTGCTGGGTTACAAGGTGAGACAGCGTTCTTGAGTAAATTCATGAGCAAGAAATACGAAAAACAATAATTACGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4340</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>103588</contig_pos>
        <strand>+</strand>
        <context>ACGGACTAAC[A/G]GCTATCATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATGAGCAAGAAATACGAAAAACAATAATTACGGTCATAACGGACTAAC</left_flank>
        <right_flank>GCTATCATAACAATATCATAATGGCTCACTGACGGCCCAGCGAGCATTTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTGGCCGTTGCGCTGTTATTGGTTCCACCTATGGAGTCCTAAATTCTCATTTTGTTTATCGATTTTTGTCCCTGAAAAATCATCACTTCGTAACCGAGTACTTTAATCCTTACGGTTTGATTTTATCAGCAGTCTGGGTCCTTTTCCACTATTTATCCTGGTCTGTAATAGCCGATCATACAATGCTACCCGACTTGGAATCCCGGAACTATGCGAGAGAATCATTTGAAAAGGTTTATGGGAATATGGAAAATCTCAGTATGAAGATTGCAACCTATTCGGTAAGTGAGGTAGATTAATCTCAATAGAGCGCGCTTTCCAGGAGGTCTCTTCCGAAGTAATGCTTCGCTCATGGTTGGGAACCCTTTGGGTGACAATTTTATCATCTTATTCTATTATTTTATATTTTGTGCTGGGTTACAAGGTGAGACAGCGTTCTTGAGTAAATTCATGAGCAAGAAATACGAAAAACAATAATTACGGTCATAACGGACTAACAGCTATCATAACAATATCATAATGGCTCACTGACGGCCCAGCGAGCATTTGATGAGCCTATGACATGTTAAGAAAACCAAAGGTTTCCAGATAATGACCAGTTTAAGCCACGGATTGGACTATATGAGTGCACGGACCCTTCAAATGCAGAGAAGATTGTTTTGGGCGTTGGCCATTCAAACAGTTATTCCAATTGTTGTCAGTTTTATGCCAACTGTTTTTGTACTGTATGGAGCCGCATTTGGTTTTGACGTTTTTGGGTTTGTAATTTGGAAAATTAAAGATTGGTAACTTAAAAAAATATTTTCAGTTGGATAAATTGGGTGTCCGCAATTGCTATAACATTTTTCCCATTTCTGGATCCACTGGCTATCACAATGTGCCTTCCAGCTCTGAGGCATCGGATATTTTATAAGCATAAAATTGCTAATTTGACTCCGAATTTGTCGAATCGAATCATTTATAGTAGTTCAAACAGATTATGATTTTTTTCTTGTGGAT</canonical>
            <polymorphic>GCTGGCCGTTGCGCTGTTATTGGTTCCACCTATGGAGTCCTAAATTCTCATTTTGTTTATCGATTTTTGTCCCTGAAAAATCATCACTTCGTAACCGAGTACTTTAATCCTTACGGTTTGATTTTATCAGCAGTCTGGGTCCTTTTCCACTATTTATCCTGGTCTGTAATAGCCGATCATACAATGCTACCCGACTTGGAATCCCGGAACTATGCGAGAGAATCATTTGAAAAGGTTTATGGGAATATGGAAAATCTCAGTATGAAGATTGCAACCTATTCGGTAAGTGAGGTAGATTAATCTCAATAGAGCGCGCTTTCCAGGAGGTCTCTTCCGAAGTAATGCTTCGCTCATGGTTGGGAACCCTTTGGGTGACAATTTTATCATCTTATTCTATTATTTTATATTTTGTGCTGGGTTACAAGGTGAGACAGCGTTCTTGAGTAAATTCATGAGCAAGAAATACGAAAAACAATAATTACGGTCATAACGGACTAACRGCTATCATAACAATATCATAATGGCTCACTGACGGCCCAGCGAGCATTTGATGAGCCTATGACATGTTAAGAAAACCAAAGGTTTCCAGATAATGACCAGTTTAAGCCACGGATTGGACTATATGAGTGCACGGACCCTTCAAATGCAGAGAAGATTGTTTTGGGCGTTGGCCATTCAAACAGTTATTCCAATTGTTGTCAGTTTTATGCCAACTGTTTTTGTACTGTATGGAGCCGCATTTGGTTTTGACGTTTTTGGGTTTGTAATTTGGAAAATTAAAGATTGGTAACTTAAAAAAATATTTTCAGTTGGATAAATTGGGTGTCCGCAATTGCTATAACATTTTTCCCATTTCTGGATCCACTGGCTATCACAATGTGCCTTCCAGCTCTGAGGCATCGGATATTTTATAAGCATAAAATTGCTAATTTGACTCCGAATTTGTCGAATCGAATCATTTATAGTAGTTCAAACAGATTATGATTTTTTTCTTGTGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>501 388 111</canonical_bands>
                <polymorphic_bands>889 111</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>329 167 134 111 65 63 51 23 21 20 11 5</canonical_bands>
                <polymorphic_bands>352 167 134 111 65 63 51 21 20 11 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGGTGACAATTTTATCATCTTA</pcr_primer_p1>
		<pcr_primer_p2>GTGGCTTAAACTGGTCATTATC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TGGGTGACAATTTTATCATCTTATTCTATTATTTTATATTTTGTGCTGGGTTACAAGGTGAGACAGCGTTCTTGAGTAAATTCATGAGCAAGAAATACGAAAAACAATAATTACGGTCATAACGGACTAACAGCTATCATAACAATATCATAATGGCTCACTGACGGCCCAGCGAGCATTTGATGAGCCTATGACATGTTAAGAAAACCAAAGGTTTCCAGATAATGACCAGTTTAAGCCAC</canonical_amplicon>
		<polymorphic_amplicon>TGGGTGACAATTTTATCATCTTATTCTATTATTTTATATTTTGTGCTGGGTTACAAGGTGAGACAGCGTTCTTGAGTAAATTCATGAGCAAGAAATACGAAAAACAATAATTACGGTCATAACGGACTAACRGCTATCATAACAATATCATAATGGCTCACTGACGGCCCAGCGAGCATTTGATGAGCCTATGACATGTTAAGAAAACCAAAGGTTTCCAGATAATGACCAGTTTAAGCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4341</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>103773</contig_pos>
        <strand>+</strand>
        <context>TTCAAACAGT[C/T]ATWCCAATTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCCTTCAAATGCAGAGAAGATTGTTTTGGGCGTTGGCCATTCAAACAGT</left_flank>
        <right_flank>ATTCCAATTGTTGTCAGTTTTATGCCAACTGTTTTTGTACTGTATGGAGC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTACCCGACTTGGAATCCCGGAACTATGCGAGAGAATCATTTGAAAAGGTTTATGGGAATATGGAAAATCTCAGTATGAAGATTGCAACCTATTCGGTAAGTGAGGTAGATTAATCTCAATAGAGCGCGCTTTCCAGGAGGTCTCTTCCGAAGTAATGCTTCGCTCATGGTTGGGAACCCTTTGGGTGACAATTTTATCATCTTATTCTATTATTTTATATTTTGTGCTGGGTTACAAGGTGAGACAGCGTTCTTGAGTAAATTCATGAGCAAGAAATACGAAAAACAATAATTACGGTCATAACGGACTAACAGCTATCATAACAATATCATAATGGCTCACTGACGGCCCAGCGAGCATTTGATGAGCCTATGACATGTTAAGAAAACCAAAGGTTTCCAGATAATGACCAGTTTAAGCCACGGATTGGACTATATGAGTGCACGGACCCTTCAAATGCAGAGAAGATTGTTTTGGGCGTTGGCCATTCAAACAGTTATTCCAATTGTTGTCAGTTTTATGCCAACTGTTTTTGTACTGTATGGAGCCGCATTTGGTTTTGACGTTTTTGGGTTTGTAATTTGGAAAATTAAAGATTGGTAACTTAAAAAAATATTTTCAGTTGGATAAATTGGGTGTCCGCAATTGCTATAACATTTTTCCCATTTCTGGATCCACTGGCTATCACAATGTGCCTTCCAGCTCTGAGGCATCGGATATTTTATAAGCATAAAATTGCTAATTTGACTCCGAATTTGTCGAATCGAATCATTTATAGTAGTTCAAACAGATTATGATTTTTTTCTTGTGGATTTTTGGACTTCAAAAAAAATTTTTGGACTTCAAAAAAAAACTTTTAAAAAAATTTGGATTAAAATTTGTTGAATGGAATAGTTTTTAGCTTTGAGAATTTCGAGTTCAAAAATGATATTTTTGAATTATTGAAAATTGTTTCTGGCATCAAAGATCACTTTTTTTTGACTCATAAAACTCGGAAA</canonical>
            <polymorphic>GCTACCCGACTTGGAATCCCGGAACTATGCGAGAGAATCATTTGAAAAGGTTTATGGGAATATGGAAAATCTCAGTATGAAGATTGCAACCTATTCGGTAAGTGAGGTAGATTAATCTCAATAGAGCGCGCTTTCCAGGAGGTCTCTTCCGAAGTAATGCTTCGCTCATGGTTGGGAACCCTTTGGGTGACAATTTTATCATCTTATTCTATTATTTTATATTTTGTGCTGGGTTACAAGGTGAGACAGCGTTCTTGAGTAAATTCATGAGCAAGAAATACGAAAAACAATAATTACGGTCATAACGGACTAACAGCTATCATAACAATATCATAATGGCTCACTGACGGCCCAGCGAGCATTTGATGAGCCTATGACATGTTAAGAAAACCAAAGGTTTCCAGATAATGACCAGTTTAAGCCACGGATTGGACTATATGAGTGCACGGACCCTTCAAATGCAGAGAAGATTGTTTTGGGCGTTGGCCATTCAAACAGTYATTCCAATTGTTGTCAGTTTTATGCCAACTGTTTTTGTACTGTATGGAGCCGCATTTGGTTTTGACGTTTTTGGGTTTGTAATTTGGAAAATTAAAGATTGGTAACTTAAAAAAATATTTTCAGTTGGATAAATTGGGTGTCCGCAATTGCTATAACATTTTTCCCATTTCTGGATCCACTGGCTATCACAATGTGCCTTCCAGCTCTGAGGCATCGGATATTTTATAAGCATAAAATTGCTAATTTGACTCCGAATTTGTCGAATCGAATCATTTATAGTAGTTCAAACAGATTATGATTTTTTTCTTGTGGATTTTTGGACTTCAAAAAAAATTTTTGGACTTCAAAAAAAAACTTTTAAAAAAATTTGGATTAAAATTTGTTGAATGGAATAGTTTTTAGCTTTGAGAATTTCGAGTTCAAAAATGATATTTTTGAATTATTGAAAATTGTTTCTGGCATCAAAGATCACTTTTTTTTGACTCATAAAACTCGGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAATATCATAATGGCTCACTG</pcr_primer_p1>
		<pcr_primer_p2>CAAAAACGTCAAAACCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACAATATCATAATGGCTCACTGACGGCCCAGCGAGCATTTGATGAGCCTATGACATGTTAAGAAAACCAAAGGTTTCCAGATAATGACCAGTTTAAGCCACGGATTGGACTATATGAGTGCACGGACCCTTCAAATGCAGAGAAGATTGTTTTGGGCGTTGGCCATTCAAACAGTTATTCCAATTGTTGTCAGTTTTATGCCAACTGTTTTTGTACTGTATGGAGCCGCATTTGGTTTTGACGTTTTTG</canonical_amplicon>
		<polymorphic_amplicon>AACAATATCATAATGGCTCACTGACGGCCCAGCGAGCATTTGATGAGCCTATGACATGTTAAGAAAACCAAAGGTTTCCAGATAATGACCAGTTTAAGCCACGGATTGGACTATATGAGTGCACGGACCCTTCAAATGCAGAGAAGATTGTTTTGGGCGTTGGCCATTCAAACAGTYATTCCAATTGTTGTCAGTTTTATGCCAACTGTTTTTGTACTGTATGGAGCCGCATTTGGTTTTGACGTTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4342</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>103776</contig_pos>
        <strand>+</strand>
        <context>AAACAGTYAT[A/T]CCAATTGTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTCAAATGCAGAGAAGATTGTTTTGGGCGTTGGCCATTCAAACAGTTAT</left_flank>
        <right_flank>CCAATTGTTGTCAGTTTTATGCCAACTGTTTTTGTACTGTATGGAGCCGC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCCGACTTGGAATCCCGGAACTATGCGAGAGAATCATTTGAAAAGGTTTATGGGAATATGGAAAATCTCAGTATGAAGATTGCAACCTATTCGGTAAGTGAGGTAGATTAATCTCAATAGAGCGCGCTTTCCAGGAGGTCTCTTCCGAAGTAATGCTTCGCTCATGGTTGGGAACCCTTTGGGTGACAATTTTATCATCTTATTCTATTATTTTATATTTTGTGCTGGGTTACAAGGTGAGACAGCGTTCTTGAGTAAATTCATGAGCAAGAAATACGAAAAACAATAATTACGGTCATAACGGACTAACAGCTATCATAACAATATCATAATGGCTCACTGACGGCCCAGCGAGCATTTGATGAGCCTATGACATGTTAAGAAAACCAAAGGTTTCCAGATAATGACCAGTTTAAGCCACGGATTGGACTATATGAGTGCACGGACCCTTCAAATGCAGAGAAGATTGTTTTGGGCGTTGGCCATTCAAACAGTTATTCCAATTGTTGTCAGTTTTATGCCAACTGTTTTTGTACTGTATGGAGCCGCATTTGGTTTTGACGTTTTTGGGTTTGTAATTTGGAAAATTAAAGATTGGTAACTTAAAAAAATATTTTCAGTTGGATAAATTGGGTGTCCGCAATTGCTATAACATTTTTCCCATTTCTGGATCCACTGGCTATCACAATGTGCCTTCCAGCTCTGAGGCATCGGATATTTTATAAGCATAAAATTGCTAATTTGACTCCGAATTTGTCGAATCGAATCATTTATAGTAGTTCAAACAGATTATGATTTTTTTCTTGTGGATTTTTGGACTTCAAAAAAAATTTTTGGACTTCAAAAAAAAACTTTTAAAAAAATTTGGATTAAAATTTGTTGAATGGAATAGTTTTTAGCTTTGAGAATTTCGAGTTCAAAAATGATATTTTTGAATTATTGAAAATTGTTTCTGGCATCAAAGATCACTTTTTTTTGACTCATAAAACTCGGAAATTT</canonical>
            <polymorphic>ACCCGACTTGGAATCCCGGAACTATGCGAGAGAATCATTTGAAAAGGTTTATGGGAATATGGAAAATCTCAGTATGAAGATTGCAACCTATTCGGTAAGTGAGGTAGATTAATCTCAATAGAGCGCGCTTTCCAGGAGGTCTCTTCCGAAGTAATGCTTCGCTCATGGTTGGGAACCCTTTGGGTGACAATTTTATCATCTTATTCTATTATTTTATATTTTGTGCTGGGTTACAAGGTGAGACAGCGTTCTTGAGTAAATTCATGAGCAAGAAATACGAAAAACAATAATTACGGTCATAACGGACTAACAGCTATCATAACAATATCATAATGGCTCACTGACGGCCCAGCGAGCATTTGATGAGCCTATGACATGTTAAGAAAACCAAAGGTTTCCAGATAATGACCAGTTTAAGCCACGGATTGGACTATATGAGTGCACGGACCCTTCAAATGCAGAGAAGATTGTTTTGGGCGTTGGCCATTCAAACAGTTATWCCAATTGTTGTCAGTTTTATGCCAACTGTTTTTGTACTGTATGGAGCCGCATTTGGTTTTGACGTTTTTGGGTTTGTAATTTGGAAAATTAAAGATTGGTAACTTAAAAAAATATTTTCAGTTGGATAAATTGGGTGTCCGCAATTGCTATAACATTTTTCCCATTTCTGGATCCACTGGCTATCACAATGTGCCTTCCAGCTCTGAGGCATCGGATATTTTATAAGCATAAAATTGCTAATTTGACTCCGAATTTGTCGAATCGAATCATTTATAGTAGTTCAAACAGATTATGATTTTTTTCTTGTGGATTTTTGGACTTCAAAAAAAATTTTTGGACTTCAAAAAAAAACTTTTAAAAAAATTTGGATTAAAATTTGTTGAATGGAATAGTTTTTAGCTTTGAGAATTTCGAGTTCAAAAATGATATTTTTGAATTATTGAAAATTGTTTCTGGCATCAAAGATCACTTTTTTTTGACTCATAAAACTCGGAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAATATCATAATGGCTCACTG</pcr_primer_p1>
		<pcr_primer_p2>CAAAAACGTCAAAACCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACAATATCATAATGGCTCACTGACGGCCCAGCGAGCATTTGATGAGCCTATGACATGTTAAGAAAACCAAAGGTTTCCAGATAATGACCAGTTTAAGCCACGGATTGGACTATATGAGTGCACGGACCCTTCAAATGCAGAGAAGATTGTTTTGGGCGTTGGCCATTCAAACAGTTATTCCAATTGTTGTCAGTTTTATGCCAACTGTTTTTGTACTGTATGGAGCCGCATTTGGTTTTGACGTTTTTG</canonical_amplicon>
		<polymorphic_amplicon>AACAATATCATAATGGCTCACTGACGGCCCAGCGAGCATTTGATGAGCCTATGACATGTTAAGAAAACCAAAGGTTTCCAGATAATGACCAGTTTAAGCCACGGATTGGACTATATGAGTGCACGGACCCTTCAAATGCAGAGAAGATTGTTTTGGGCGTTGGCCATTCAAACAGTTATWCCAATTGTTGTCAGTTTTATGCCAACTGTTTTTGTACTGTATGGAGCCGCATTTGGTTTTGACGTTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4343</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>103809</contig_pos>
        <strand>+</strand>
        <context>CAACTGTTTT[A/T]GTACTGTATG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCCATTCAAACAGTTATTCCAATTGTTGTCAGTTTTATGCCAACTGTTTT</left_flank>
        <right_flank>GTACTGTATGGAGCCGCATTTGGTTTTGACGTTTTTGGGTTTGTAATTTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCATTTGAAAAGGTTTATGGGAATATGGAAAATCTCAGTATGAAGATTGCAACCTATTCGGTAAGTGAGGTAGATTAATCTCAATAGAGCGCGCTTTCCAGGAGGTCTCTTCCGAAGTAATGCTTCGCTCATGGTTGGGAACCCTTTGGGTGACAATTTTATCATCTTATTCTATTATTTTATATTTTGTGCTGGGTTACAAGGTGAGACAGCGTTCTTGAGTAAATTCATGAGCAAGAAATACGAAAAACAATAATTACGGTCATAACGGACTAACAGCTATCATAACAATATCATAATGGCTCACTGACGGCCCAGCGAGCATTTGATGAGCCTATGACATGTTAAGAAAACCAAAGGTTTCCAGATAATGACCAGTTTAAGCCACGGATTGGACTATATGAGTGCACGGACCCTTCAAATGCAGAGAAGATTGTTTTGGGCGTTGGCCATTCAAACAGTTATTCCAATTGTTGTCAGTTTTATGCCAACTGTTTTTGTACTGTATGGAGCCGCATTTGGTTTTGACGTTTTTGGGTTTGTAATTTGGAAAATTAAAGATTGGTAACTTAAAAAAATATTTTCAGTTGGATAAATTGGGTGTCCGCAATTGCTATAACATTTTTCCCATTTCTGGATCCACTGGCTATCACAATGTGCCTTCCAGCTCTGAGGCATCGGATATTTTATAAGCATAAAATTGCTAATTTGACTCCGAATTTGTCGAATCGAATCATTTATAGTAGTTCAAACAGATTATGATTTTTTTCTTGTGGATTTTTGGACTTCAAAAAAAATTTTTGGACTTCAAAAAAAAACTTTTAAAAAAATTTGGATTAAAATTTGTTGAATGGAATAGTTTTTAGCTTTGAGAATTTCGAGTTCAAAAATGATATTTTTGAATTATTGAAAATTGTTTCTGGCATCAAAGATCACTTTTTTTTGACTCATAAAACTCGGAAATTTTGTCATTAAATATTTTCTTCGAATTTCAAACTA</canonical>
            <polymorphic>ATCATTTGAAAAGGTTTATGGGAATATGGAAAATCTCAGTATGAAGATTGCAACCTATTCGGTAAGTGAGGTAGATTAATCTCAATAGAGCGCGCTTTCCAGGAGGTCTCTTCCGAAGTAATGCTTCGCTCATGGTTGGGAACCCTTTGGGTGACAATTTTATCATCTTATTCTATTATTTTATATTTTGTGCTGGGTTACAAGGTGAGACAGCGTTCTTGAGTAAATTCATGAGCAAGAAATACGAAAAACAATAATTACGGTCATAACGGACTAACAGCTATCATAACAATATCATAATGGCTCACTGACGGCCCAGCGAGCATTTGATGAGCCTATGACATGTTAAGAAAACCAAAGGTTTCCAGATAATGACCAGTTTAAGCCACGGATTGGACTATATGAGTGCACGGACCCTTCAAATGCAGAGAAGATTGTTTTGGGCGTTGGCCATTCAAACAGTTATTCCAATTGTTGTCAGTTTTATGCCAACTGTTTTWGTACTGTATGGAGCCGCATTTGGTTTTGACGTTTTTGGGTTTGTAATTTGGAAAATTAAAGATTGGTAACTTAAAAAAATATTTTCAGTTGGATAAATTGGGTGTCCGCAATTGCTATAACATTTTTCCCATTTCTGGATCCACTGGCTATCACAATGTGCCTTCCAGCTCTGAGGCATCGGATATTTTATAAGCATAAAATTGCTAATTTGACTCCGAATTTGTCGAATCGAATCATTTATAGTAGTTCAAACAGATTATGATTTTTTTCTTGTGGATTTTTGGACTTCAAAAAAAATTTTTGGACTTCAAAAAAAAACTTTTAAAAAAATTTGGATTAAAATTTGTTGAATGGAATAGTTTTTAGCTTTGAGAATTTCGAGTTCAAAAATGATATTTTTGAATTATTGAAAATTGTTTCTGGCATCAAAGATCACTTTTTTTTGACTCATAAAACTCGGAAATTTTGTCATTAAATATTTTCTTCGAATTTCAAACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTCCAGATAATGACCAGTTTA</pcr_primer_p1>
		<pcr_primer_p2>ACCCAATTTATCCAACTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GTTTCCAGATAATGACCAGTTTAAGCCACGGATTGGACTATATGAGTGCACGGACCCTTCAAATGCAGAGAAGATTGTTTTGGGCGTTGGCCATTCAAACAGTTATTCCAATTGTTGTCAGTTTTATGCCAACTGTTTTTGTACTGTATGGAGCCGCATTTGGTTTTGACGTTTTTGGGTTTGTAATTTGGAAAATTAAAGATTGGTAACTTAAAAAAATATTTTCAGTTGGATAAATTGGGT</canonical_amplicon>
		<polymorphic_amplicon>GTTTCCAGATAATGACCAGTTTAAGCCACGGATTGGACTATATGAGTGCACGGACCCTTCAAATGCAGAGAAGATTGTTTTGGGCGTTGGCCATTCAAACAGTTATTCCAATTGTTGTCAGTTTTATGCCAACTGTTTTWGTACTGTATGGAGCCGCATTTGGTTTTGACGTTTTTGGGTTTGTAATTTGGAAAATTAAAGATTGGTAACTTAAAAAAATATTTTCAGTTGGATAAATTGGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4344</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>108244</contig_pos>
        <strand>+</strand>
        <context>TCGATATCGC[A/G]TATTTTGTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGC</left_flank>
        <right_flank>TATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAATCGTGTTTAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGGGGGGGGGGTACTGTTGTTTTTTGAGATGGCAATAAACCGAAGTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCGTATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAATCGTGTTTATAGCAGTTCGAGAATTTGATAATTGGGTGTTTTACAGTAAAATTATTCTTTTTAATTTTAATTTTTTTCACAAAGAATCTTCCAGCTAGAACTGAAATCCGATATATGATTTTTTTTGAAATTGAGAAATAAATATTTTCCAGAAAAAAATGCAGACTCATCAAAACCATATTCATAGATAAATAGTTTTTTTTCACTACTTCCGATTTCCGAAAAACATCTACGTAATTCTGATCAGATCAGATCCAAAACATAATTTTAATACCTATGGGACATTTAGGATTCTTCTAAAACACAACTCATAAAAATTGATGCATCTCGAACAATTTCAGTCTGGAAACCAGAACTCTTAAATTCTTTAAGGATCACCTCAAAAAGAATGCTTGTGAATTGGGCTCATTTTCTAATCCCAAAAATTTTCTTCATCCTTTCTTTCCTTTCAAATCCCGTT</canonical>
            <polymorphic>AAGGGGGGGGGGTACTGTTGTTTTTTGAGATGGCAATAAACCGAAGTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCRTATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAATCGTGTTTATAGCAGTTCGAGAATTTGATAATTGGGTGTTTTACAGTAAAATTATTCTTTTTAATTTTAATTTTTTTCACAAAGAATCTTCCAGCTAGAACTGAAATCCGATATATGATTTTTTTTGAAATTGAGAAATAAATATTTTCCAGAAAAAAATGCAGACTCATCAAAACCATATTCATAGATAAATAGTTTTTTTTCACTACTTCCGATTTCCGAAAAACATCTACGTAATTCTGATCAGATCAGATCCAAAACATAATTTTAATACCTATGGGACATTTAGGATTCTTCTAAAACACAACTCATAAAAATTGATGCATCTCGAACAATTTCAGTCTGGAAACCAGAACTCTTAAATTCTTTAAGGATCACCTCAAAAAGAATGCTTGTGAATTGGGCTCATTTTCTAATCCCAAAAATTTTCTTCATCCTTTCTTTCCTTTCAAATCCCGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATAATTTTCAGCTGGGTCA</pcr_primer_p1>
		<pcr_primer_p2>GTTCTAGCTGGAAGATTCTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCGTATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAATCGTGTTTATAGCAGTTCGAGAATTTGATAATTGGGTGTTTTACAGTAAAATTATTCTTTTTAATTTTAATTTTTTTCACAAAGAATCTTCCAGCTAGAAC</canonical_amplicon>
		<polymorphic_amplicon>TAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCRTATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAATCGTGTTTATAGCAGTTCGAGAATTTGATAATTGGGTGTTTTACAGTAAAATTATTCTTTTTAATTTTAATTTTTTTCACAAAGAATCTTCCAGCTAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4345</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>108202</contig_pos>
        <strand>+</strand>
        <context>ATTTCTTGAT[C/T]CACTGGCCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGAT</left_flank>
        <right_flank>CACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCGTATTTTGT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTGAAGCCAGGTGAAGTCGTAAAACTGTCAGGTTGATAGTCAAGGGGGGGGGGTACTGTTGTTTTTTGAGATGGCAATAAACCGAAGTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCGTATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAATCGTGTTTATAGCAGTTCGAGAATTTGATAATTGGGTGTTTTACAGTAAAATTATTCTTTTTAATTTTAATTTTTTTCACAAAGAATCTTCCAGCTAGAACTGAAATCCGATATATGATTTTTTTTGAAATTGAGAAATAAATATTTTCCAGAAAAAAATGCAGACTCATCAAAACCATATTCATAGATAAATAGTTTTTTTTCACTACTTCCGATTTCCGAAAAACATCTACGTAATTCTGATCAGATCAGATCCAAAACATAATTTTAATACCTATGGGACATTTAGGATTCTTCTAAAACACAACTCATAAAAATTGATGCATCTCGAACAATTTCAGTCTGGAAACCAGAACTCTTAAATTCTTTAAGGATCACCTCAAAAAGAATGCTTGTGAATTGGGCTCATTTTCTAATC</canonical>
            <polymorphic>CGTGAAGCCAGGTGAAGTCGTAAAACTGTCAGGTTGATAGTCAAGGGGGGGGGGTACTGTTGTTTTTTGAGATGGCAATAAACCGAAGTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATYCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCGTATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAATCGTGTTTATAGCAGTTCGAGAATTTGATAATTGGGTGTTTTACAGTAAAATTATTCTTTTTAATTTTAATTTTTTTCACAAAGAATCTTCCAGCTAGAACTGAAATCCGATATATGATTTTTTTTGAAATTGAGAAATAAATATTTTCCAGAAAAAAATGCAGACTCATCAAAACCATATTCATAGATAAATAGTTTTTTTTCACTACTTCCGATTTCCGAAAAACATCTACGTAATTCTGATCAGATCAGATCCAAAACATAATTTTAATACCTATGGGACATTTAGGATTCTTCTAAAACACAACTCATAAAAATTGATGCATCTCGAACAATTTCAGTCTGGAAACCAGAACTCTTAAATTCTTTAAGGATCACCTCAAAAAGAATGCTTGTGAATTGGGCTCATTTTCTAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>295 169 128 126 104 98 80</canonical_bands>
                <polymorphic_bands>295 273 128 126 98 80</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>399 206 169 128 98</canonical_bands>
                <polymorphic_bands>568 206 128 98</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATAATTTTCAGCTGGGTCA</pcr_primer_p1>
		<pcr_primer_p2>GTTCTAGCTGGAAGATTCTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCGTATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAATCGTGTTTATAGCAGTTCGAGAATTTGATAATTGGGTGTTTTACAGTAAAATTATTCTTTTTAATTTTAATTTTTTTCACAAAGAATCTTCCAGCTAGAAC</canonical_amplicon>
		<polymorphic_amplicon>TAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATYCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCGTATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAATCGTGTTTATAGCAGTTCGAGAATTTGATAATTGGGTGTTTTACAGTAAAATTATTCTTTTTAATTTTAATTTTTTTCACAAAGAATCTTCCAGCTAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4346</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>108177</contig_pos>
        <strand>+</strand>
        <context>CTTCGGTCGG[C/T]GTTTCGTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGG</left_flank>
        <right_flank>GTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTCATTAGCAGGCCAGGTGATGTCGTGAAGCCAGGTGAAGTCGTAAAACTGTCAGGTTGATAGTCAAGGGGGGGGGGTACTGTTGTTTTTTGAGATGGCAATAAACCGAAGTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCGTATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAATCGTGTTTATAGCAGTTCGAGAATTTGATAATTGGGTGTTTTACAGTAAAATTATTCTTTTTAATTTTAATTTTTTTCACAAAGAATCTTCCAGCTAGAACTGAAATCCGATATATGATTTTTTTTGAAATTGAGAAATAAATATTTTCCAGAAAAAAATGCAGACTCATCAAAACCATATTCATAGATAAATAGTTTTTTTTCACTACTTCCGATTTCCGAAAAACATCTACGTAATTCTGATCAGATCAGATCCAAAACATAATTTTAATACCTATGGGACATTTAGGATTCTTCTAAAACACAACTCATAAAAATTGATGCATCTCGAACAATTTCAGTCTGGAAACCAGAACTCTTAAATTCTTTAAGGATCACCTCAAAAAGAATGCT</canonical>
            <polymorphic>TGGTCATTAGCAGGCCAGGTGATGTCGTGAAGCCAGGTGAAGTCGTAAAACTGTCAGGTTGATAGTCAAGGGGGGGGGGTACTGTTGTTTTTTGAGATGGCAATAAACCGAAGTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGYGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCGTATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAATCGTGTTTATAGCAGTTCGAGAATTTGATAATTGGGTGTTTTACAGTAAAATTATTCTTTTTAATTTTAATTTTTTTCACAAAGAATCTTCCAGCTAGAACTGAAATCCGATATATGATTTTTTTTGAAATTGAGAAATAAATATTTTCCAGAAAAAAATGCAGACTCATCAAAACCATATTCATAGATAAATAGTTTTTTTTCACTACTTCCGATTTCCGAAAAACATCTACGTAATTCTGATCAGATCAGATCCAAAACATAATTTTAATACCTATGGGACATTTAGGATTCTTCTAAAACACAACTCATAAAAATTGATGCATCTCGAACAATTTCAGTCTGGAAACCAGAACTCTTAAATTCTTTAAGGATCACCTCAAAAAGAATGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTTAAGGTCTTCAGTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGACAGATTAGGAGAAACATT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCGTATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAA</canonical_amplicon>
		<polymorphic_amplicon>CATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGYGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCGTATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4347</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>108110</contig_pos>
        <strand>+</strand>
        <context>GAATTAGAAA[C/T]TCTATTTAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAA</left_flank>
        <right_flank>TCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATATTTTGTACTTGGGTACAAGGTAAGCCAATTTTTAATAAAAATTTCAAGGTCGGGTCAATAGCTGGTCATTAGCAGGCCAGGTGATGTCGTGAAGCCAGGTGAAGTCGTAAAACTGTCAGGTTGATAGTCAAGGGGGGGGGGTACTGTTGTTTTTTGAGATGGCAATAAACCGAAGTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCGTATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAATCGTGTTTATAGCAGTTCGAGAATTTGATAATTGGGTGTTTTACAGTAAAATTATTCTTTTTAATTTTAATTTTTTTCACAAAGAATCTTCCAGCTAGAACTGAAATCCGATATATGATTTTTTTTGAAATTGAGAAATAAATATTTTCCAGAAAAAAATGCAGACTCATCAAAACCATATTCATAGATAAATAGTTTTTTTTCACTACTTCCGATTTCCGAAAAACATCTACGTAATTCTGATCAGATCAGATCCAAAACATAATTTTAATACCTATGGGACATTTAGGATTCTTCTAAAACACAACTCATAAAAATTGATGCAT</canonical>
            <polymorphic>TTATATTTTGTACTTGGGTACAAGGTAAGCCAATTTTTAATAAAAATTTCAAGGTCGGGTCAATAGCTGGTCATTAGCAGGCCAGGTGATGTCGTGAAGCCAGGTGAAGTCGTAAAACTGTCAGGTTGATAGTCAAGGGGGGGGGGTACTGTTGTTTTTTGAGATGGCAATAAACCGAAGTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAAYTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCGTATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAATCGTGTTTATAGCAGTTCGAGAATTTGATAATTGGGTGTTTTACAGTAAAATTATTCTTTTTAATTTTAATTTTTTTCACAAAGAATCTTCCAGCTAGAACTGAAATCCGATATATGATTTTTTTTGAAATTGAGAAATAAATATTTTCCAGAAAAAAATGCAGACTCATCAAAACCATATTCATAGATAAATAGTTTTTTTTCACTACTTCCGATTTCCGAAAAACATCTACGTAATTCTGATCAGATCAGATCCAAAACATAATTTTAATACCTATGGGACATTTAGGATTCTTCTAAAACACAACTCATAAAAATTGATGCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>401 305 147 52 51 44</canonical_bands>
                <polymorphic_bands>401 305 199 51 44</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>153 133 114 107 60 56 52 51 48 45 31 28 21 20 13 13 12 11 11 8 7 6</canonical_bands>
                <polymorphic_bands>153 133 114 107 60 56 52 51 48 45 31 28 21 20 19 13 13 11 11 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTTTAAGGTCTTCAGTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGACAGATTAGGAGAAACATT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCGTATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAA</canonical_amplicon>
		<polymorphic_amplicon>CATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAAYTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCGTATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4348</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>108065</contig_pos>
        <strand>+</strand>
        <context>AARTTCAAAT[A/G]GGAGGTTAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAAATTCAAAT</left_flank>
        <right_flank>GGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGTACCTTGTTTGTGACTGTGTTAGCATCTTATTCGATCACTTTATATTTTGTACTTGGGTACAAGGTAAGCCAATTTTTAATAAAAATTTCAAGGTCGGGTCAATAGCTGGTCATTAGCAGGCCAGGTGATGTCGTGAAGCCAGGTGAAGTCGTAAAACTGTCAGGTTGATAGTCAAGGGGGGGGGGTACTGTTGTTTTTTGAGATGGCAATAAACCGAAGTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCGTATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAATCGTGTTTATAGCAGTTCGAGAATTTGATAATTGGGTGTTTTACAGTAAAATTATTCTTTTTAATTTTAATTTTTTTCACAAAGAATCTTCCAGCTAGAACTGAAATCCGATATATGATTTTTTTTGAAATTGAGAAATAAATATTTTCCAGAAAAAAATGCAGACTCATCAAAACCATATTCATAGATAAATAGTTTTTTTTCACTACTTCCGATTTCCGAAAAACATCTACGTAATTCTGATCAGATCAGATCCAAAACATAATTTTAATACCTATGGG</canonical>
            <polymorphic>TTTGGTACCTTGTTTGTGACTGTGTTAGCATCTTATTCGATCACTTTATATTTTGTACTTGGGTACAAGGTAAGCCAATTTTTAATAAAAATTTCAAGGTCGGGTCAATAGCTGGTCATTAGCAGGCCAGGTGATGTCGTGAAGCCAGGTGAAGTCGTAAAACTGTCAGGTTGATAGTCAAGGGGGGGGGGTACTGTTGTTTTTTGAGATGGCAATAAACCGAAGTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATRGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCGTATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAATCGTGTTTATAGCAGTTCGAGAATTTGATAATTGGGTGTTTTACAGTAAAATTATTCTTTTTAATTTTAATTTTTTTCACAAAGAATCTTCCAGCTAGAACTGAAATCCGATATATGATTTTTTTTGAAATTGAGAAATAAATATTTTCCAGAAAAAAATGCAGACTCATCAAAACCATATTCATAGATAAATAGTTTTTTTTCACTACTTCCGATTTCCGAAAAACATCTACGTAATTCTGATCAGATCAGATCCAAAACATAATTTTAATACCTATGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTGACTTTTTGAGGTGAAAG</pcr_primer_p1>
		<pcr_primer_p2>GATATCGAAGAGCTGGAATG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>GATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATC</canonical_amplicon>
		<polymorphic_amplicon>GATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATRGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4349</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>108057</contig_pos>
        <strand>+</strand>
        <context>TTTGATTAAA[A/G]TTCAAATRGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAA</left_flank>
        <right_flank>TTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATCGTGGTTTGGTACCTTGTTTGTGACTGTGTTAGCATCTTATTCGATCACTTTATATTTTGTACTTGGGTACAAGGTAAGCCAATTTTTAATAAAAATTTCAAGGTCGGGTCAATAGCTGGTCATTAGCAGGCCAGGTGATGTCGTGAAGCCAGGTGAAGTCGTAAAACTGTCAGGTTGATAGTCAAGGGGGGGGGGTACTGTTGTTTTTTGAGATGGCAATAAACCGAAGTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCGTATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAATCGTGTTTATAGCAGTTCGAGAATTTGATAATTGGGTGTTTTACAGTAAAATTATTCTTTTTAATTTTAATTTTTTTCACAAAGAATCTTCCAGCTAGAACTGAAATCCGATATATGATTTTTTTTGAAATTGAGAAATAAATATTTTCCAGAAAAAAATGCAGACTCATCAAAACCATATTCATAGATAAATAGTTTTTTTTCACTACTTCCGATTTCCGAAAAACATCTACGTAATTCTGATCAGATCAGATCCAAAACATAATTTTAATA</canonical>
            <polymorphic>GATCGTGGTTTGGTACCTTGTTTGTGACTGTGTTAGCATCTTATTCGATCACTTTATATTTTGTACTTGGGTACAAGGTAAGCCAATTTTTAATAAAAATTTCAAGGTCGGGTCAATAGCTGGTCATTAGCAGGCCAGGTGATGTCGTGAAGCCAGGTGAAGTCGTAAAACTGTCAGGTTGATAGTCAAGGGGGGGGGGTACTGTTGTTTTTTGAGATGGCAATAAACCGAAGTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAARTTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCGTATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAATCGTGTTTATAGCAGTTCGAGAATTTGATAATTGGGTGTTTTACAGTAAAATTATTCTTTTTAATTTTAATTTTTTTCACAAAGAATCTTCCAGCTAGAACTGAAATCCGATATATGATTTTTTTTGAAATTGAGAAATAAATATTTTCCAGAAAAAAATGCAGACTCATCAAAACCATATTCATAGATAAATAGTTTTTTTTCACTACTTCCGATTTCCGAAAAACATCTACGTAATTCTGATCAGATCAGATCCAAAACATAATTTTAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>401 252 147 97 52 51</canonical_bands>
                <polymorphic_bands>453 252 147 97 51</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>153 133 114 107 84 60 56 51 48 45 28 21 20 13 13 12 11 10 8 7 6</canonical_bands>
                <polymorphic_bands>153 133 114 107 101 84 60 51 48 28 21 20 13 13 12 11 10 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTGACTTTTTGAGGTGAAAG</pcr_primer_p1>
		<pcr_primer_p2>GATATCGAAGAGCTGGAATG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>GATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATC</canonical_amplicon>
		<polymorphic_amplicon>GATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAARTTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4350</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>108005</contig_pos>
        <strand>+</strand>
        <context>WCGGCAATTC[G/T]GATTGACTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTC</left_flank>
        <right_flank>GATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAATTGAGCGAATTCTCTTTTTGCAGGAAGTTTCATCTCGAGGGGTCTATCGATCGTGGTTTGGTACCTTGTTTGTGACTGTGTTAGCATCTTATTCGATCACTTTATATTTTGTACTTGGGTACAAGGTAAGCCAATTTTTAATAAAAATTTCAAGGTCGGGTCAATAGCTGGTCATTAGCAGGCCAGGTGATGTCGTGAAGCCAGGTGAAGTCGTAAAACTGTCAGGTTGATAGTCAAGGGGGGGGGGTACTGTTGTTTTTTGAGATGGCAATAAACCGAAGTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCGTATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAATCGTGTTTATAGCAGTTCGAGAATTTGATAATTGGGTGTTTTACAGTAAAATTATTCTTTTTAATTTTAATTTTTTTCACAAAGAATCTTCCAGCTAGAACTGAAATCCGATATATGATTTTTTTTGAAATTGAGAAATAAATATTTTCCAGAAAAAAATGCAGACTCATCAAAACCATATTCATAGATAAATAGTTTTTTTTCACTACTTCCGATTTCCG</canonical>
            <polymorphic>GCAATTGAGCGAATTCTCTTTTTGCAGGAAGTTTCATCTCGAGGGGTCTATCGATCGTGGTTTGGTACCTTGTTTGTGACTGTGTTAGCATCTTATTCGATCACTTTATATTTTGTACTTGGGTACAAGGTAAGCCAATTTTTAATAAAAATTTCAAGGTCGGGTCAATAGCTGGTCATTAGCAGGCCAGGTGATGTCGTGAAGCCAGGTGAAGTCGTAAAACTGTCAGGTTGATAGTCAAGGGGGGGGGGTACTGTTGTTTTTTGAGATGGCAATAAACCGAAGTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCKGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCGTATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAATCGTGTTTATAGCAGTTCGAGAATTTGATAATTGGGTGTTTTACAGTAAAATTATTCTTTTTAATTTTAATTTTTTTCACAAAGAATCTTCCAGCTAGAACTGAAATCCGATATATGATTTTTTTTGAAATTGAGAAATAAATATTTTCCAGAAAAAAATGCAGACTCATCAAAACCATATTCATAGATAAATAGTTTTTTTTCACTACTTCCGATTTCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAACCAAGGATTGGATTAT</pcr_primer_p1>
		<pcr_primer_p2>GTTGACCCAGCTGAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>297</pcr_amplicon_size>
		<canonical_amplicon>TTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAAC</canonical_amplicon>
		<polymorphic_amplicon>TTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCKGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4351</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>107995</contig_pos>
        <strand>+</strand>
        <context>TTTGTATGGA[A/T]CGGCAATTCK</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGA</left_flank>
        <right_flank>CGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCATTTTGAGCAATTGAGCGAATTCTCTTTTTGCAGGAAGTTTCATCTCGAGGGGTCTATCGATCGTGGTTTGGTACCTTGTTTGTGACTGTGTTAGCATCTTATTCGATCACTTTATATTTTGTACTTGGGTACAAGGTAAGCCAATTTTTAATAAAAATTTCAAGGTCGGGTCAATAGCTGGTCATTAGCAGGCCAGGTGATGTCGTGAAGCCAGGTGAAGTCGTAAAACTGTCAGGTTGATAGTCAAGGGGGGGGGGTACTGTTGTTTTTTGAGATGGCAATAAACCGAAGTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCGTATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAATCGTGTTTATAGCAGTTCGAGAATTTGATAATTGGGTGTTTTACAGTAAAATTATTCTTTTTAATTTTAATTTTTTTCACAAAGAATCTTCCAGCTAGAACTGAAATCCGATATATGATTTTTTTTGAAATTGAGAAATAAATATTTTCCAGAAAAAAATGCAGACTCATCAAAACCATATTCATAGATAAATAGTTTTTTTTCACTACTT</canonical>
            <polymorphic>ACCATTTTGAGCAATTGAGCGAATTCTCTTTTTGCAGGAAGTTTCATCTCGAGGGGTCTATCGATCGTGGTTTGGTACCTTGTTTGTGACTGTGTTAGCATCTTATTCGATCACTTTATATTTTGTACTTGGGTACAAGGTAAGCCAATTTTTAATAAAAATTTCAAGGTCGGGTCAATAGCTGGTCATTAGCAGGCCAGGTGATGTCGTGAAGCCAGGTGAAGTCGTAAAACTGTCAGGTTGATAGTCAAGGGGGGGGGGTACTGTTGTTTTTTGAGATGGCAATAAACCGAAGTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGAWCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCGTATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAATCGTGTTTATAGCAGTTCGAGAATTTGATAATTGGGTGTTTTACAGTAAAATTATTCTTTTTAATTTTAATTTTTTTCACAAAGAATCTTCCAGCTAGAACTGAAATCCGATATATGATTTTTTTTGAAATTGAGAAATAAATATTTTCCAGAAAAAAATGCAGACTCATCAAAACCATATTCATAGATAAATAGTTTTTTTTCACTACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>503 286 103 62 46</canonical_bands>
                <polymorphic_bands>606 286 62 46</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACTTAGGATTTCCAGATAATG</pcr_primer_p1>
		<pcr_primer_p2>CAAACTGAAGACCTTAAAATGAG</pcr_primer_p2>
		<pcr_amplicon_size>218</pcr_amplicon_size>
		<canonical_amplicon>AAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTG</canonical_amplicon>
		<polymorphic_amplicon>AAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGAWCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4352</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>107950</contig_pos>
        <strand>+</strand>
        <context>AACAGCGATT[C/T]CAATTTGTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATT</left_flank>
        <right_flank>CAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAGAAGGTTTGAACATGAAGACGTTGATTTTTTCGGTGAGCTAACCATTTTGAGCAATTGAGCGAATTCTCTTTTTGCAGGAAGTTTCATCTCGAGGGGTCTATCGATCGTGGTTTGGTACCTTGTTTGTGACTGTGTTAGCATCTTATTCGATCACTTTATATTTTGTACTTGGGTACAAGGTAAGCCAATTTTTAATAAAAATTTCAAGGTCGGGTCAATAGCTGGTCATTAGCAGGCCAGGTGATGTCGTGAAGCCAGGTGAAGTCGTAAAACTGTCAGGTTGATAGTCAAGGGGGGGGGGTACTGTTGTTTTTTGAGATGGCAATAAACCGAAGTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCGTATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAATCGTGTTTATAGCAGTTCGAGAATTTGATAATTGGGTGTTTTACAGTAAAATTATTCTTTTTAATTTTAATTTTTTTCACAAAGAATCTTCCAGCTAGAACTGAAATCCGATATATGATTTTTTTTGAAATTGAGAAATAAATATTTTCCAGAAAAAAATGCAGAC</canonical>
            <polymorphic>TTTAGAAGGTTTGAACATGAAGACGTTGATTTTTTCGGTGAGCTAACCATTTTGAGCAATTGAGCGAATTCTCTTTTTGCAGGAAGTTTCATCTCGAGGGGTCTATCGATCGTGGTTTGGTACCTTGTTTGTGACTGTGTTAGCATCTTATTCGATCACTTTATATTTTGTACTTGGGTACAAGGTAAGCCAATTTTTAATAAAAATTTCAAGGTCGGGTCAATAGCTGGTCATTAGCAGGCCAGGTGATGTCGTGAAGCCAGGTGAAGTCGTAAAACTGTCAGGTTGATAGTCAAGGGGGGGGGGTACTGTTGTTTTTTGAGATGGCAATAAACCGAAGTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTYCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCGTATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAATCGTGTTTATAGCAGTTCGAGAATTTGATAATTGGGTGTTTTACAGTAAAATTATTCTTTTTAATTTTAATTTTTTTCACAAAGAATCTTCCAGCTAGAACTGAAATCCGATATATGATTTTTTTTGAAATTGAGAAATAAATATTTTCCAGAAAAAAATGCAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCCTATGAGGATTCTTCAATTT</pcr_primer_p1>
		<pcr_primer_p2>CCTTAAAATGAGCTTTCACCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGG</canonical_amplicon>
		<polymorphic_amplicon>GTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTYCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4353</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>107910</contig_pos>
        <strand>+</strand>
        <context>TTCAACTGCA[A/G]CGACGGTTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCA</left_flank>
        <right_flank>CGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATTATGTGAGAGACTCTTTCGAGAAAGTTTACGGTAGTTTAGAAGGTTTGAACATGAAGACGTTGATTTTTTCGGTGAGCTAACCATTTTGAGCAATTGAGCGAATTCTCTTTTTGCAGGAAGTTTCATCTCGAGGGGTCTATCGATCGTGGTTTGGTACCTTGTTTGTGACTGTGTTAGCATCTTATTCGATCACTTTATATTTTGTACTTGGGTACAAGGTAAGCCAATTTTTAATAAAAATTTCAAGGTCGGGTCAATAGCTGGTCATTAGCAGGCCAGGTGATGTCGTGAAGCCAGGTGAAGTCGTAAAACTGTCAGGTTGATAGTCAAGGGGGGGGGGTACTGTTGTTTTTTGAGATGGCAATAAACCGAAGTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCGTATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAATCGTGTTTATAGCAGTTCGAGAATTTGATAATTGGGTGTTTTACAGTAAAATTATTCTTTTTAATTTTAATTTTTTTCACAAAGAATCTTCCAGCTAGAACTGAAATCCGATATATGATTTTTTTT</canonical>
            <polymorphic>GAAATTATGTGAGAGACTCTTTCGAGAAAGTTTACGGTAGTTTAGAAGGTTTGAACATGAAGACGTTGATTTTTTCGGTGAGCTAACCATTTTGAGCAATTGAGCGAATTCTCTTTTTGCAGGAAGTTTCATCTCGAGGGGTCTATCGATCGTGGTTTGGTACCTTGTTTGTGACTGTGTTAGCATCTTATTCGATCACTTTATATTTTGTACTTGGGTACAAGGTAAGCCAATTTTTAATAAAAATTTCAAGGTCGGGTCAATAGCTGGTCATTAGCAGGCCAGGTGATGTCGTGAAGCCAGGTGAAGTCGTAAAACTGTCAGGTTGATAGTCAAGGGGGGGGGGTACTGTTGTTTTTTGAGATGGCAATAAACCGAAGTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCARCGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCGTATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAATCGTGTTTATAGCAGTTCGAGAATTTGATAATTGGGTGTTTTACAGTAAAATTATTCTTTTTAATTTTAATTTTTTTCACAAAGAATCTTCCAGCTAGAACTGAAATCCGATATATGATTTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCCTATGAGGATTCTTCAATTT</pcr_primer_p1>
		<pcr_primer_p2>CCTTAAAATGAGCTTTCACCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGG</canonical_amplicon>
		<polymorphic_amplicon>GTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCARCGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4354</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>107885</contig_pos>
        <strand>+</strand>
        <context>TTGGATTATA[G/T]GAGTGATCGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATA</left_flank>
        <right_flank>GAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAATGTTGGCAGATACTGAATCAAGAAATTATGTGAGAGACTCTTTCGAGAAAGTTTACGGTAGTTTAGAAGGTTTGAACATGAAGACGTTGATTTTTTCGGTGAGCTAACCATTTTGAGCAATTGAGCGAATTCTCTTTTTGCAGGAAGTTTCATCTCGAGGGGTCTATCGATCGTGGTTTGGTACCTTGTTTGTGACTGTGTTAGCATCTTATTCGATCACTTTATATTTTGTACTTGGGTACAAGGTAAGCCAATTTTTAATAAAAATTTCAAGGTCGGGTCAATAGCTGGTCATTAGCAGGCCAGGTGATGTCGTGAAGCCAGGTGAAGTCGTAAAACTGTCAGGTTGATAGTCAAGGGGGGGGGGTACTGTTGTTTTTTGAGATGGCAATAAACCGAAGTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCGTATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAATCGTGTTTATAGCAGTTCGAGAATTTGATAATTGGGTGTTTTACAGTAAAATTATTCTTTTTAATTTTAATTTTTTTCACAAAGAATCTTCCAGCTAGAAC</canonical>
            <polymorphic>ACAATGTTGGCAGATACTGAATCAAGAAATTATGTGAGAGACTCTTTCGAGAAAGTTTACGGTAGTTTAGAAGGTTTGAACATGAAGACGTTGATTTTTTCGGTGAGCTAACCATTTTGAGCAATTGAGCGAATTCTCTTTTTGCAGGAAGTTTCATCTCGAGGGGTCTATCGATCGTGGTTTGGTACCTTGTTTGTGACTGTGTTAGCATCTTATTCGATCACTTTATATTTTGTACTTGGGTACAAGGTAAGCCAATTTTTAATAAAAATTTCAAGGTCGGGTCAATAGCTGGTCATTAGCAGGCCAGGTGATGTCGTGAAGCCAGGTGAAGTCGTAAAACTGTCAGGTTGATAGTCAAGGGGGGGGGGTACTGTTGTTTTTTGAGATGGCAATAAACCGAAGTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAKGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCGTATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAATCGTGTTTATAGCAGTTCGAGAATTTGATAATTGGGTGTTTTACAGTAAAATTATTCTTTTTAATTTTAATTTTTTTCACAAAGAATCTTCCAGCTAGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCCTATGAGGATTCTTCAATTT</pcr_primer_p1>
		<pcr_primer_p2>CCTTAAAATGAGCTTTCACCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGG</canonical_amplicon>
		<polymorphic_amplicon>GTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAKGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4355</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>107820</contig_pos>
        <strand>+</strand>
        <context>TTTATGTACA[A/G]TTTTCTAGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAGATGGCAATAAACCGAAGTCCTATGAGGATTCTTCAATTTATGTACA</left_flank>
        <right_flank>TTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTATCATCTTATCTGTCCTATTGGTAGTTGTACACTGAACCATATGGCTTGCGTAGCCGATATAACAATGTTGGCAGATACTGAATCAAGAAATTATGTGAGAGACTCTTTCGAGAAAGTTTACGGTAGTTTAGAAGGTTTGAACATGAAGACGTTGATTTTTTCGGTGAGCTAACCATTTTGAGCAATTGAGCGAATTCTCTTTTTGCAGGAAGTTTCATCTCGAGGGGTCTATCGATCGTGGTTTGGTACCTTGTTTGTGACTGTGTTAGCATCTTATTCGATCACTTTATATTTTGTACTTGGGTACAAGGTAAGCCAATTTTTAATAAAAATTTCAAGGTCGGGTCAATAGCTGGTCATTAGCAGGCCAGGTGATGTCGTGAAGCCAGGTGAAGTCGTAAAACTGTCAGGTTGATAGTCAAGGGGGGGGGGTACTGTTGTTTTTTGAGATGGCAATAAACCGAAGTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCGTATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAATCGTGTTTATAGCAGTTCGAGAATTTGATAATTGGG</canonical>
            <polymorphic>GGTATCATCTTATCTGTCCTATTGGTAGTTGTACACTGAACCATATGGCTTGCGTAGCCGATATAACAATGTTGGCAGATACTGAATCAAGAAATTATGTGAGAGACTCTTTCGAGAAAGTTTACGGTAGTTTAGAAGGTTTGAACATGAAGACGTTGATTTTTTCGGTGAGCTAACCATTTTGAGCAATTGAGCGAATTCTCTTTTTGCAGGAAGTTTCATCTCGAGGGGTCTATCGATCGTGGTTTGGTACCTTGTTTGTGACTGTGTTAGCATCTTATTCGATCACTTTATATTTTGTACTTGGGTACAAGGTAAGCCAATTTTTAATAAAAATTTCAAGGTCGGGTCAATAGCTGGTCATTAGCAGGCCAGGTGATGTCGTGAAGCCAGGTGAAGTCGTAAAACTGTCAGGTTGATAGTCAAGGGGGGGGGGTACTGTTGTTTTTTGAGATGGCAATAAACCGAAGTCCTATGAGGATTCTTCAATTTATGTACARTTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCACAATGTGCATTCCAGCTCTTCGATATCGCGTATTTTGTCGAATTCGAAATGTTTCTCCTAATCTGTCAAATCGTGTTTATAGCAGTTCGAGAATTTGATAATTGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>153 133 125 114 95 92 56 51 48 45 21 13 12 11 9 8 7 7</canonical_bands>
                <polymorphic_bands>153 144 125 114 95 92 56 51 48 45 21 13 12 9 8 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCGTAAAACTGTCAGGTTGATA</pcr_primer_p1>
		<pcr_primer_p2>GGCATGAAGCTAACACAAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GTCGTAAAACTGTCAGGTTGATAGTCAAGGGGGGGGGGTACTGTTGTTTTTTGAGATGGCAATAAACCGAAGTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCC</canonical_amplicon>
		<polymorphic_amplicon>GTCGTAAAACTGTCAGGTTGATAGTCAAGGGGGGGGGGTACTGTTGTTTTTTGAGATGGCAATAAACCGAAGTCCTATGAGGATTCTTCAATTTATGTACARTTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4358</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>169620</contig_pos>
        <strand>+</strand>
        <context>GTAATCACAT[A/T]TCACCCAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGCAGTCTAATGTAACACAACCTTTAGGAATATTCAGTTTGTAATCACAT</left_flank>
        <right_flank>TCACCCAAAAAACCAGGTTATCGACACCACAATAACTGAATACGCCTAGA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTATCGAAATATCGAATAATGCTAGGCGATTTGCCTGAAATCACATTATATTTATTTTGCTAACAGCAAGCTGGTGCGCCTTCGGCGCTATTCAATTTAGTTTTTTACTGGTTCGTGGTTCTGCTCCTCAATTATTCTTAAAGGATCACGTAAATCTATATTCATTTTTCAAGCTTTTCAAAAGTCGACAGAGTGACACCGGGACCAACAGACGCATCTAGCGTTTTATATATGAAGAAGATATTTTCAAAAACCTACTTTCGTTAAATCTTTGTTTTCTGCAACGTTTGAGCACTTGTTCCAGATGAAAATTTTGACGATGAGCATCAGAGATAAAAGCGCTATCACGCCATGAATTATCTGAAAATCCGAATCAACTACAGGACTACCACAAGGCTTACCATTTCATAGGATAAAAAGTAGGTCAAATGACAGTTGTTACCAATGCAGTCTAATGTAACACAACCTTTAGGAATATTCAGTTTGTAATCACATATCACCCAAAAAACCAGGTTATCGACACCACAATAACTGAATACGCCTAGAGCGATGGCTACATTTGAAATTTTATTTCTATGATTATGATACGAAATTGGTGAAAAAACCGCGAAAATTCGATCCAACGTAATTACAGCTGCTAGGAGACCCCGGATACTGAGAAGATTTACCACTGGCCATGTGATATAGAATATGGTATATAAATATGGGTCTTGGATATTGAAAAATTTCAAGTAAGTAGTTGACAATGTGAGGAGGTCTAAAATATTTTCATTTTAAATGAAATTCAGGATCAATAACATTTCCAAAACTGAGCAAAAATTGAGAAAGAATCGGACATAAAACAGTGTTAAGCCGGAAGACTTTTTCAGTTTTTTGGATCTAAAAGTGGATTAATTAAATTTATTTATTCCATATTTCATCAAATGACTAACATGAAAAGATTGTACAGTAGATAGGAATGAATTAATAAAGATACGAAAGCTAGGAGGACAGATA</canonical>
            <polymorphic>AAAATTATCGAAATATCGAATAATGCTAGGCGATTTGCCTGAAATCACATTATATTTATTTTGCTAACAGCAAGCTGGTGCGCCTTCGGCGCTATTCAATTTAGTTTTTTACTGGTTCGTGGTTCTGCTCCTCAATTATTCTTAAAGGATCACGTAAATCTATATTCATTTTTCAAGCTTTTCAAAAGTCGACAGAGTGACACCGGGACCAACAGACGCATCTAGCGTTTTATATATGAAGAAGATATTTTCAAAAACCTACTTTCGTTAAATCTTTGTTTTCTGCAACGTTTGAGCACTTGTTCCAGATGAAAATTTTGACGATGAGCATCAGAGATAAAAGCGCTATCACGCCATGAATTATCTGAAAATCCGAATCAACTACAGGACTACCACAAGGCTTACCATTTCATAGGATAAAAAGTAGGTCAAATGACAGTTGTTACCAATGCAGTCTAATGTAACACAACCTTTAGGAATATTCAGTTTGTAATCACATWTCACCCAAAAAACCAGGTTATCGACACCACAATAACTGAATACGCCTAGAGCGATGGCTACATTTGAAATTTTATTTCTATGATTATGATACGAAATTGGTGAAAAAACCGCGAAAATTCGATCCAACGTAATTACAGCTGCTAGGAGACCCCGGATACTGAGAAGATTTACCACTGGCCATGTGATATAGAATATGGTATATAAATATGGGTCTTGGATATTGAAAAATTTCAAGTAAGTAGTTGACAATGTGAGGAGGTCTAAAATATTTTCATTTTAAATGAAATTCAGGATCAATAACATTTCCAAAACTGAGCAAAAATTGAGAAAGAATCGGACATAAAACAGTGTTAAGCCGGAAGACTTTTTCAGTTTTTTGGATCTAAAAGTGGATTAATTAAATTTATTTATTCCATATTTCATCAAATGACTAACATGAAAAGATTGTACAGTAGATAGGAATGAATTAATAAAGATACGAAAGCTAGGAGGACAGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCTGAAAATCCGAATCAACTA</pcr_primer_p1>
		<pcr_primer_p2>TTCACCAATTTCGTATCATAATC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TATCTGAAAATCCGAATCAACTACAGGACTACCACAAGGCTTACCATTTCATAGGATAAAAAGTAGGTCAAATGACAGTTGTTACCAATGCAGTCTAATGTAACACAACCTTTAGGAATATTCAGTTTGTAATCACATATCACCCAAAAAACCAGGTTATCGACACCACAATAACTGAATACGCCTAGAGCGATGGCTACATTTGAAATTTTATTTCTATGATTATGATACGAAATTGGTGAA</canonical_amplicon>
		<polymorphic_amplicon>TATCTGAAAATCCGAATCAACTACAGGACTACCACAAGGCTTACCATTTCATAGGATAAAAAGTAGGTCAAATGACAGTTGTTACCAATGCAGTCTAATGTAACACAACCTTTAGGAATATTCAGTTTGTAATCACATWTCACCCAAAAAACCAGGTTATCGACACCACAATAACTGAATACGCCTAGAGCGATGGCTACATTTGAAATTTTATTTCTATGATTATGATACGAAATTGGTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4359</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>169698</contig_pos>
        <strand>+</strand>
        <context>AATTTTATTT[C/T]TATGATTATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACAATAACTGAATACGCCTAGAGCGATGGCTACATTTGAAATTTTATTT</left_flank>
        <right_flank>TATGATTATGATACGAAATTGGTGAAAAAACCGCGAAAATTCGATCCAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCGCCTTCGGCGCTATTCAATTTAGTTTTTTACTGGTTCGTGGTTCTGCTCCTCAATTATTCTTAAAGGATCACGTAAATCTATATTCATTTTTCAAGCTTTTCAAAAGTCGACAGAGTGACACCGGGACCAACAGACGCATCTAGCGTTTTATATATGAAGAAGATATTTTCAAAAACCTACTTTCGTTAAATCTTTGTTTTCTGCAACGTTTGAGCACTTGTTCCAGATGAAAATTTTGACGATGAGCATCAGAGATAAAAGCGCTATCACGCCATGAATTATCTGAAAATCCGAATCAACTACAGGACTACCACAAGGCTTACCATTTCATAGGATAAAAAGTAGGTCAAATGACAGTTGTTACCAATGCAGTCTAATGTAACACAACCTTTAGGAATATTCAGTTTGTAATCACATATCACCCAAAAAACCAGGTTATCGACACCACAATAACTGAATACGCCTAGAGCGATGGCTACATTTGAAATTTTATTTCTATGATTATGATACGAAATTGGTGAAAAAACCGCGAAAATTCGATCCAACGTAATTACAGCTGCTAGGAGACCCCGGATACTGAGAAGATTTACCACTGGCCATGTGATATAGAATATGGTATATAAATATGGGTCTTGGATATTGAAAAATTTCAAGTAAGTAGTTGACAATGTGAGGAGGTCTAAAATATTTTCATTTTAAATGAAATTCAGGATCAATAACATTTCCAAAACTGAGCAAAAATTGAGAAAGAATCGGACATAAAACAGTGTTAAGCCGGAAGACTTTTTCAGTTTTTTGGATCTAAAAGTGGATTAATTAAATTTATTTATTCCATATTTCATCAAATGACTAACATGAAAAGATTGTACAGTAGATAGGAATGAATTAATAAAGATACGAAAGCTAGGAGGACAGATATCGAGGAATTGAAAATAGGCAGCCAAGACATAAGTTTTTTTTTGGTTCGAAAATTTCACATCTAACCAGAAAATGAAA</canonical>
            <polymorphic>TGCGCCTTCGGCGCTATTCAATTTAGTTTTTTACTGGTTCGTGGTTCTGCTCCTCAATTATTCTTAAAGGATCACGTAAATCTATATTCATTTTTCAAGCTTTTCAAAAGTCGACAGAGTGACACCGGGACCAACAGACGCATCTAGCGTTTTATATATGAAGAAGATATTTTCAAAAACCTACTTTCGTTAAATCTTTGTTTTCTGCAACGTTTGAGCACTTGTTCCAGATGAAAATTTTGACGATGAGCATCAGAGATAAAAGCGCTATCACGCCATGAATTATCTGAAAATCCGAATCAACTACAGGACTACCACAAGGCTTACCATTTCATAGGATAAAAAGTAGGTCAAATGACAGTTGTTACCAATGCAGTCTAATGTAACACAACCTTTAGGAATATTCAGTTTGTAATCACATATCACCCAAAAAACCAGGTTATCGACACCACAATAACTGAATACGCCTAGAGCGATGGCTACATTTGAAATTTTATTTYTATGATTATGATACGAAATTGGTGAAAAAACCGCGAAAATTCGATCCAACGTAATTACAGCTGCTAGGAGACCCCGGATACTGAGAAGATTTACCACTGGCCATGTGATATAGAATATGGTATATAAATATGGGTCTTGGATATTGAAAAATTTCAAGTAAGTAGTTGACAATGTGAGGAGGTCTAAAATATTTTCATTTTAAATGAAATTCAGGATCAATAACATTTCCAAAACTGAGCAAAAATTGAGAAAGAATCGGACATAAAACAGTGTTAAGCCGGAAGACTTTTTCAGTTTTTTGGATCTAAAAGTGGATTAATTAAATTTATTTATTCCATATTTCATCAAATGACTAACATGAAAAGATTGTACAGTAGATAGGAATGAATTAATAAAGATACGAAAGCTAGGAGGACAGATATCGAGGAATTGAAAATAGGCAGCCAAGACATAAGTTTTTTTTTGGTTCGAAAATTTCACATCTAACCAGAAAATGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCGACACCACAATAACTGAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTAGACCTCCTCACATTGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATCGACACCACAATAACTGAATACGCCTAGAGCGATGGCTACATTTGAAATTTTATTTCTATGATTATGATACGAAATTGGTGAAAAAACCGCGAAAATTCGATCCAACGTAATTACAGCTGCTAGGAGACCCCGGATACTGAGAAGATTTACCACTGGCCATGTGATATAGAATATGGTATATAAATATGGGTCTTGGATATTGAAAAATTTCAAGTAAGTAGTTGACAATGTGAGGAGGTCTAAAA</canonical_amplicon>
		<polymorphic_amplicon>TATCGACACCACAATAACTGAATACGCCTAGAGCGATGGCTACATTTGAAATTTTATTTYTATGATTATGATACGAAATTGGTGAAAAAACCGCGAAAATTCGATCCAACGTAATTACAGCTGCTAGGAGACCCCGGATACTGAGAAGATTTACCACTGGCCATGTGATATAGAATATGGTATATAAATATGGGTCTTGGATATTGAAAAATTTCAAGTAAGTAGTTGACAATGTGAGGAGGTCTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4360</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>169849</contig_pos>
        <strand>+</strand>
        <context>ATATTGAAAA[A/G]TTTCAAGTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCATGTGATATAGAATATGGTATATAAATATGGGTCTTGGATATTGAAAA</left_flank>
        <right_flank>TTTCAAGTAAGTAGTTGACAATGTGAGGAGGTCTAAAATATTTTCATTTT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATATATGAAGAAGATATTTTCAAAAACCTACTTTCGTTAAATCTTTGTTTTCTGCAACGTTTGAGCACTTGTTCCAGATGAAAATTTTGACGATGAGCATCAGAGATAAAAGCGCTATCACGCCATGAATTATCTGAAAATCCGAATCAACTACAGGACTACCACAAGGCTTACCATTTCATAGGATAAAAAGTAGGTCAAATGACAGTTGTTACCAATGCAGTCTAATGTAACACAACCTTTAGGAATATTCAGTTTGTAATCACATATCACCCAAAAAACCAGGTTATCGACACCACAATAACTGAATACGCCTAGAGCGATGGCTACATTTGAAATTTTATTTCTATGATTATGATACGAAATTGGTGAAAAAACCGCGAAAATTCGATCCAACGTAATTACAGCTGCTAGGAGACCCCGGATACTGAGAAGATTTACCACTGGCCATGTGATATAGAATATGGTATATAAATATGGGTCTTGGATATTGAAAAATTTCAAGTAAGTAGTTGACAATGTGAGGAGGTCTAAAATATTTTCATTTTAAATGAAATTCAGGATCAATAACATTTCCAAAACTGAGCAAAAATTGAGAAAGAATCGGACATAAAACAGTGTTAAGCCGGAAGACTTTTTCAGTTTTTTGGATCTAAAAGTGGATTAATTAAATTTATTTATTCCATATTTCATCAAATGACTAACATGAAAAGATTGTACAGTAGATAGGAATGAATTAATAAAGATACGAAAGCTAGGAGGACAGATATCGAGGAATTGAAAATAGGCAGCCAAGACATAAGTTTTTTTTTGGTTCGAAAATTTCACATCTAACCAGAAAATGAAAATTTCACATCTAGTCAGAAGAAAACAAACGGAGAAAAAAATGTTTAATTAATGGAACACAAATTATAAAGCAGCACATTTACAAAAAATTATAAAGCCAACGGTGTAGCTGGAACGACTTTTGATGTTTTTCGATTTTTTGCGAGCCTGTG</canonical>
            <polymorphic>TTATATATGAAGAAGATATTTTCAAAAACCTACTTTCGTTAAATCTTTGTTTTCTGCAACGTTTGAGCACTTGTTCCAGATGAAAATTTTGACGATGAGCATCAGAGATAAAAGCGCTATCACGCCATGAATTATCTGAAAATCCGAATCAACTACAGGACTACCACAAGGCTTACCATTTCATAGGATAAAAAGTAGGTCAAATGACAGTTGTTACCAATGCAGTCTAATGTAACACAACCTTTAGGAATATTCAGTTTGTAATCACATATCACCCAAAAAACCAGGTTATCGACACCACAATAACTGAATACGCCTAGAGCGATGGCTACATTTGAAATTTTATTTCTATGATTATGATACGAAATTGGTGAAAAAACCGCGAAAATTCGATCCAACGTAATTACAGCTGCTAGGAGACCCCGGATACTGAGAAGATTTACCACTGGCCATGTGATATAGAATATGGTATATAAATATGGGTCTTGGATATTGAAAARTTTCAAGTAAGTAGTTGACAATGTGAGGAGGTCTAAAATATTTTCATTTTAAATGAAATTCAGGATCAATAACATTTCCAAAACTGAGCAAAAATTGAGAAAGAATCGGACATAAAACAGTGTTAAGCCGGAAGACTTTTTCAGTTTTTTGGATCTAAAAGTGGATTAATTAAATTTATTTATTCCATATTTCATCAAATGACTAACATGAAAAGATTGTACAGTAGATAGGAATGAATTAATAAAGATACGAAAGCTAGGAGGACAGATATCGAGGAATTGAAAATAGGCAGCCAAGACATAAGTTTTTTTTTGGTTCGAAAATTTCACATCTAACCAGAAAATGAAAATTTCACATCTAGTCAGAAGAAAACAAACGGAGAAAAAAATGTTTAATTAATGGAACACAAATTATAAAGCAGCACATTTACAAAAAATTATAAAGCCAACGGTGTAGCTGGAACGACTTTTGATGTTTTTCGATTTTTTGCGAGCCTGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>254 152 150 116 112 84 58 48 26</canonical_bands>
                <polymorphic_bands>254 170 152 150 116 84 48 26</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>209 97 84 75 65 64 58 46 45 45 41 36 27 26 26 21 15 15 5</canonical_bands>
                <polymorphic_bands>209 155 84 75 65 64 46 45 45 41 36 27 26 26 21 15 15 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTATGATACGAAATTGGTGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCAATTTTTGCTCAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATTATGATACGAAATTGGTGAAAAAACCGCGAAAATTCGATCCAACGTAATTACAGCTGCTAGGAGACCCCGGATACTGAGAAGATTTACCACTGGCCATGTGATATAGAATATGGTATATAAATATGGGTCTTGGATATTGAAAAATTTCAAGTAAGTAGTTGACAATGTGAGGAGGTCTAAAATATTTTCATTTTAAATGAAATTCAGGATCAATAACATTTCCAAAACTGAGCAAAAATTGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>GATTATGATACGAAATTGGTGAAAAAACCGCGAAAATTCGATCCAACGTAATTACAGCTGCTAGGAGACCCCGGATACTGAGAAGATTTACCACTGGCCATGTGATATAGAATATGGTATATAAATATGGGTCTTGGATATTGAAAARTTTCAAGTAAGTAGTTGACAATGTGAGGAGGTCTAAAATATTTTCATTTTAAATGAAATTCAGGATCAATAACATTTCCAAAACTGAGCAAAAATTGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4361</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>169894</contig_pos>
        <strand>+</strand>
        <context>AAAATATTTT[C/T]ATTTTAAATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAAATTTCAAGTAAGTAGTTGACAATGTGAGGAGGTCTAAAATATTTT</left_flank>
        <right_flank>ATTTTAAATGAAATTCAGGATCAATAACATTTCCAAAACTGAGCAAAAAT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGTTTTCTGCAACGTTTGAGCACTTGTTCCAGATGAAAATTTTGACGATGAGCATCAGAGATAAAAGCGCTATCACGCCATGAATTATCTGAAAATCCGAATCAACTACAGGACTACCACAAGGCTTACCATTTCATAGGATAAAAAGTAGGTCAAATGACAGTTGTTACCAATGCAGTCTAATGTAACACAACCTTTAGGAATATTCAGTTTGTAATCACATATCACCCAAAAAACCAGGTTATCGACACCACAATAACTGAATACGCCTAGAGCGATGGCTACATTTGAAATTTTATTTCTATGATTATGATACGAAATTGGTGAAAAAACCGCGAAAATTCGATCCAACGTAATTACAGCTGCTAGGAGACCCCGGATACTGAGAAGATTTACCACTGGCCATGTGATATAGAATATGGTATATAAATATGGGTCTTGGATATTGAAAAATTTCAAGTAAGTAGTTGACAATGTGAGGAGGTCTAAAATATTTTCATTTTAAATGAAATTCAGGATCAATAACATTTCCAAAACTGAGCAAAAATTGAGAAAGAATCGGACATAAAACAGTGTTAAGCCGGAAGACTTTTTCAGTTTTTTGGATCTAAAAGTGGATTAATTAAATTTATTTATTCCATATTTCATCAAATGACTAACATGAAAAGATTGTACAGTAGATAGGAATGAATTAATAAAGATACGAAAGCTAGGAGGACAGATATCGAGGAATTGAAAATAGGCAGCCAAGACATAAGTTTTTTTTTGGTTCGAAAATTTCACATCTAACCAGAAAATGAAAATTTCACATCTAGTCAGAAGAAAACAAACGGAGAAAAAAATGTTTAATTAATGGAACACAAATTATAAAGCAGCACATTTACAAAAAATTATAAAGCCAACGGTGTAGCTGGAACGACTTTTGATGTTTTTCGATTTTTTGCGAGCCTGTGTTTGAGGTTTCTGAAAACAAAAAAAAAATCAAATTCCATTTGCCG</canonical>
            <polymorphic>TTTGTTTTCTGCAACGTTTGAGCACTTGTTCCAGATGAAAATTTTGACGATGAGCATCAGAGATAAAAGCGCTATCACGCCATGAATTATCTGAAAATCCGAATCAACTACAGGACTACCACAAGGCTTACCATTTCATAGGATAAAAAGTAGGTCAAATGACAGTTGTTACCAATGCAGTCTAATGTAACACAACCTTTAGGAATATTCAGTTTGTAATCACATATCACCCAAAAAACCAGGTTATCGACACCACAATAACTGAATACGCCTAGAGCGATGGCTACATTTGAAATTTTATTTCTATGATTATGATACGAAATTGGTGAAAAAACCGCGAAAATTCGATCCAACGTAATTACAGCTGCTAGGAGACCCCGGATACTGAGAAGATTTACCACTGGCCATGTGATATAGAATATGGTATATAAATATGGGTCTTGGATATTGAAAAATTTCAAGTAAGTAGTTGACAATGTGAGGAGGTCTAAAATATTTTYATTTTAAATGAAATTCAGGATCAATAACATTTCCAAAACTGAGCAAAAATTGAGAAAGAATCGGACATAAAACAGTGTTAAGCCGGAAGACTTTTTCAGTTTTTTGGATCTAAAAGTGGATTAATTAAATTTATTTATTCCATATTTCATCAAATGACTAACATGAAAAGATTGTACAGTAGATAGGAATGAATTAATAAAGATACGAAAGCTAGGAGGACAGATATCGAGGAATTGAAAATAGGCAGCCAAGACATAAGTTTTTTTTTGGTTCGAAAATTTCACATCTAACCAGAAAATGAAAATTTCACATCTAGTCAGAAGAAAACAAACGGAGAAAAAAATGTTTAATTAATGGAACACAAATTATAAAGCAGCACATTTACAAAAAATTATAAAGCCAACGGTGTAGCTGGAACGACTTTTGATGTTTTTCGATTTTTTGCGAGCCTGTGTTTGAGGTTTCTGAAAACAAAAAAAAAATCAAATTCCATTTGCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATATGGGTCTTGGATATTGA</pcr_primer_p1>
		<pcr_primer_p2>TGTACAATCTTTTCATGTTAGTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAATATGGGTCTTGGATATTGAAAAATTTCAAGTAAGTAGTTGACAATGTGAGGAGGTCTAAAATATTTTCATTTTAAATGAAATTCAGGATCAATAACATTTCCAAAACTGAGCAAAAATTGAGAAAGAATCGGACATAAAACAGTGTTAAGCCGGAAGACTTTTTCAGTTTTTTGGATCTAAAAGTGGATTAATTAAATTTATTTATTCCATATTTCATCAAATGACTAACATGAAAAGATTGTACA</canonical_amplicon>
		<polymorphic_amplicon>TAAATATGGGTCTTGGATATTGAAAAATTTCAAGTAAGTAGTTGACAATGTGAGGAGGTCTAAAATATTTTYATTTTAAATGAAATTCAGGATCAATAACATTTCCAAAACTGAGCAAAAATTGAGAAAGAATCGGACATAAAACAGTGTTAAGCCGGAAGACTTTTTCAGTTTTTTGGATCTAAAAGTGGATTAATTAAATTTATTTATTCCATATTTCATCAAATGACTAACATGAAAAGATTGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4362</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>169919</contig_pos>
        <strand>+</strand>
        <context>TCAGGATCAA[A/T]AACATTTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATGTGAGGAGGTCTAAAATATTTTCATTTTAAATGAAATTCAGGATCAA</left_flank>
        <right_flank>AACATTTCCAAAACTGAGCAAAAATTGAGAAAGAATCGGACATAAAACAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTCCAGATGAAAATTTTGACGATGAGCATCAGAGATAAAAGCGCTATCACGCCATGAATTATCTGAAAATCCGAATCAACTACAGGACTACCACAAGGCTTACCATTTCATAGGATAAAAAGTAGGTCAAATGACAGTTGTTACCAATGCAGTCTAATGTAACACAACCTTTAGGAATATTCAGTTTGTAATCACATATCACCCAAAAAACCAGGTTATCGACACCACAATAACTGAATACGCCTAGAGCGATGGCTACATTTGAAATTTTATTTCTATGATTATGATACGAAATTGGTGAAAAAACCGCGAAAATTCGATCCAACGTAATTACAGCTGCTAGGAGACCCCGGATACTGAGAAGATTTACCACTGGCCATGTGATATAGAATATGGTATATAAATATGGGTCTTGGATATTGAAAAATTTCAAGTAAGTAGTTGACAATGTGAGGAGGTCTAAAATATTTTCATTTTAAATGAAATTCAGGATCAATAACATTTCCAAAACTGAGCAAAAATTGAGAAAGAATCGGACATAAAACAGTGTTAAGCCGGAAGACTTTTTCAGTTTTTTGGATCTAAAAGTGGATTAATTAAATTTATTTATTCCATATTTCATCAAATGACTAACATGAAAAGATTGTACAGTAGATAGGAATGAATTAATAAAGATACGAAAGCTAGGAGGACAGATATCGAGGAATTGAAAATAGGCAGCCAAGACATAAGTTTTTTTTTGGTTCGAAAATTTCACATCTAACCAGAAAATGAAAATTTCACATCTAGTCAGAAGAAAACAAACGGAGAAAAAAATGTTTAATTAATGGAACACAAATTATAAAGCAGCACATTTACAAAAAATTATAAAGCCAACGGTGTAGCTGGAACGACTTTTGATGTTTTTCGATTTTTTGCGAGCCTGTGTTTGAGGTTTCTGAAAACAAAAAAAAAATCAAATTCCATTTGCCGTGTCTTCAATATTACCTTGAGCCCA</canonical>
            <polymorphic>TTGTTCCAGATGAAAATTTTGACGATGAGCATCAGAGATAAAAGCGCTATCACGCCATGAATTATCTGAAAATCCGAATCAACTACAGGACTACCACAAGGCTTACCATTTCATAGGATAAAAAGTAGGTCAAATGACAGTTGTTACCAATGCAGTCTAATGTAACACAACCTTTAGGAATATTCAGTTTGTAATCACATATCACCCAAAAAACCAGGTTATCGACACCACAATAACTGAATACGCCTAGAGCGATGGCTACATTTGAAATTTTATTTCTATGATTATGATACGAAATTGGTGAAAAAACCGCGAAAATTCGATCCAACGTAATTACAGCTGCTAGGAGACCCCGGATACTGAGAAGATTTACCACTGGCCATGTGATATAGAATATGGTATATAAATATGGGTCTTGGATATTGAAAAATTTCAAGTAAGTAGTTGACAATGTGAGGAGGTCTAAAATATTTTCATTTTAAATGAAATTCAGGATCAAWAACATTTCCAAAACTGAGCAAAAATTGAGAAAGAATCGGACATAAAACAGTGTTAAGCCGGAAGACTTTTTCAGTTTTTTGGATCTAAAAGTGGATTAATTAAATTTATTTATTCCATATTTCATCAAATGACTAACATGAAAAGATTGTACAGTAGATAGGAATGAATTAATAAAGATACGAAAGCTAGGAGGACAGATATCGAGGAATTGAAAATAGGCAGCCAAGACATAAGTTTTTTTTTGGTTCGAAAATTTCACATCTAACCAGAAAATGAAAATTTCACATCTAGTCAGAAGAAAACAAACGGAGAAAAAAATGTTTAATTAATGGAACACAAATTATAAAGCAGCACATTTACAAAAAATTATAAAGCCAACGGTGTAGCTGGAACGACTTTTGATGTTTTTCGATTTTTTGCGAGCCTGTGTTTGAGGTTTCTGAAAACAAAAAAAAAATCAAATTCCATTTGCCGTGTCTTCAATATTACCTTGAGCCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATATGGGTCTTGGATATTGA</pcr_primer_p1>
		<pcr_primer_p2>TGTACAATCTTTTCATGTTAGTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAATATGGGTCTTGGATATTGAAAAATTTCAAGTAAGTAGTTGACAATGTGAGGAGGTCTAAAATATTTTCATTTTAAATGAAATTCAGGATCAATAACATTTCCAAAACTGAGCAAAAATTGAGAAAGAATCGGACATAAAACAGTGTTAAGCCGGAAGACTTTTTCAGTTTTTTGGATCTAAAAGTGGATTAATTAAATTTATTTATTCCATATTTCATCAAATGACTAACATGAAAAGATTGTACA</canonical_amplicon>
		<polymorphic_amplicon>TAAATATGGGTCTTGGATATTGAAAAATTTCAAGTAAGTAGTTGACAATGTGAGGAGGTCTAAAATATTTTCATTTTAAATGAAATTCAGGATCAAWAACATTTCCAAAACTGAGCAAAAATTGAGAAAGAATCGGACATAAAACAGTGTTAAGCCGGAAGACTTTTTCAGTTTTTTGGATCTAAAAGTGGATTAATTAAATTTATTTATTCCATATTTCATCAAATGACTAACATGAAAAGATTGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4363</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>175927</contig_pos>
        <strand>+</strand>
        <context>ATGAAGCTTG[A/T]CCAGTTGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAGCATGATTATTAATGTGACGGTGATGACGATGATTAGATGAAGCTTG</left_flank>
        <right_flank>CCAGTTGATTTTATCATTGACGAGTTGTTCGCATACGACACTGATACGAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATAATAACATATTTTTTAAAAATATTGCTGCAAAAAAACCCCACTCAAGGAGTTGAACTTGTGGGTCCAACGTTAGAGGTGCCACTTTTTTTACCAGCTTAGCTACGGAAGCGGGAGTTCTACCACTGTCCGATGTCACACATGATCGGAAGTCAGAAGTCGGAAGTATGGGAAATTGTTAATTGGAAGCTAAAAACCGAAAATCGGAACTGACCGCATTTGAGATTGGTTGGGAAGAAACCGAATTTCAGATTTTGGTTGGTTCTCTGAAATTTTGGGCTGGTTCCAAGAATAGTTAATTGCAATTTCAAGAAAAACAACCGGAAAACGGAAGATTTATTGTTTCACTCTGTTCATCCTCAATAAACATTCATTTCCATGTTCAACAAAAAACTACAATTTCAGATTTTCAGAAAAAAACAAGATTATTTACAAAAATCTACTGCCAAGCATGATTATTAATGTGACGGTGATGACGATGATTAGATGAAGCTTGACCAGTTGATTTTATCATTGACGAGTTGTTCGCATACGACACTGATACGATATCATTAGTCCGTTTGAGTGCGCGGCGTACTAGCCAACTTTCCAGTGCGTACCCACTCATTTTACAGACCAAAATTAATGAACCAAATTGTGCGGAAAGAGCTGGAAACTTGACAGTAAAACCAGCAGGTACAATGTCAAAAATAATGATGATTAGAGTGTCGATTAGTGCGAGATAATTGGCCTGACAGAGAAAAATTGAGTTAAACGTTTTTTTTTTTTTGAAAAACTCACTCTTTCCAGATCTCGACTTTTTGGCCCTTTTTGTGTGCAATGATTCCAAATGAATAGCTTAACGGCAAGTATGAGAGATGTTAAGGCAATGATTGCGTGGGATACCTGAAGTAAGATGGGACCATGTATTTGCAGAGAGCGTTCTATTTTTAGATTTTTTTTTTGAAAATTTCATTAACATTTCAAGTACACTCTTGGTTAAAGGAAGGAAGAAATG</canonical>
            <polymorphic>TAAATAATAACATATTTTTTAAAAATATTGCTGCAAAAAAACCCCACTCAAGGAGTTGAACTTGTGGGTCCAACGTTAGAGGTGCCACTTTTTTTACCAGCTTAGCTACGGAAGCGGGAGTTCTACCACTGTCCGATGTCACACATGATCGGAAGTCAGAAGTCGGAAGTATGGGAAATTGTTAATTGGAAGCTAAAAACCGAAAATCGGAACTGACCGCATTTGAGATTGGTTGGGAAGAAACCGAATTTCAGATTTTGGTTGGTTCTCTGAAATTTTGGGCTGGTTCCAAGAATAGTTAATTGCAATTTCAAGAAAAACAACCGGAAAACGGAAGATTTATTGTTTCACTCTGTTCATCCTCAATAAACATTCATTTCCATGTTCAACAAAAAACTACAATTTCAGATTTTCAGAAAAAAACAAGATTATTTACAAAAATCTACTGCCAAGCATGATTATTAATGTGACGGTGATGACGATGATTAGATGAAGCTTGWCCAGTTGATTTTATCATTGACGAGTTGTTCGCATACGACACTGATACGATATCATTAGTCCGTTTGAGTGCGCGGCGTACTAGCCAACTTTCCAGTGCGTACCCACTCATTTTACAGACCAAAATTAATGAACCAAATTGTGCGGAAAGAGCTGGAAACTTGACAGTAAAACCAGCAGGTACAATGTCAAAAATAATGATGATTAGAGTGTCGATTAGTGCGAGATAATTGGCCTGACAGAGAAAAATTGAGTTAAACGTTTTTTTTTTTTTGAAAAACTCACTCTTTCCAGATCTCGACTTTTTGGCCCTTTTTGTGTGCAATGATTCCAAATGAATAGCTTAACGGCAAGTATGAGAGATGTTAAGGCAATGATTGCGTGGGATACCTGAAGTAAGATGGGACCATGTATTTGCAGAGAGCGTTCTATTTTTAGATTTTTTTTTTGAAAATTTCATTAACATTTCAAGTACACTCTTGGTTAAAGGAAGGAAGAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCAATTTCAAGAAAAACAAC</pcr_primer_p1>
		<pcr_primer_p2>TGATATCGTATCAGTGTCGTATG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGCAATTTCAAGAAAAACAACCGGAAAACGGAAGATTTATTGTTTCACTCTGTTCATCCTCAATAAACATTCATTTCCATGTTCAACAAAAAACTACAATTTCAGATTTTCAGAAAAAAACAAGATTATTTACAAAAATCTACTGCCAAGCATGATTATTAATGTGACGGTGATGACGATGATTAGATGAAGCTTGACCAGTTGATTTTATCATTGACGAGTTGTTCGCATACGACACTGATACGATATCA</canonical_amplicon>
		<polymorphic_amplicon>TGCAATTTCAAGAAAAACAACCGGAAAACGGAAGATTTATTGTTTCACTCTGTTCATCCTCAATAAACATTCATTTCCATGTTCAACAAAAAACTACAATTTCAGATTTTCAGAAAAAAACAAGATTATTTACAAAAATCTACTGCCAAGCATGATTATTAATGTGACGGTGATGACGATGATTAGATGAAGCTTGWCCAGTTGATTTTATCATTGACGAGTTGTTCGCATACGACACTGATACGATATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4364</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>175896</contig_pos>
        <strand>+</strand>
        <context>TTATTAATGT[G/T]ACGGTGATGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAACAAGATTATTTACAAAAATCTACTGCCAAGCATGATTATTAATGT</left_flank>
        <right_flank>ACGGTGATGACGATGATTAGATGAAGCTTGACCAGTTGATTTTATCATTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACATATTTTTGTTATGAAAAGTTGTATAATTAAATAATAACATATTTTTTAAAAATATTGCTGCAAAAAAACCCCACTCAAGGAGTTGAACTTGTGGGTCCAACGTTAGAGGTGCCACTTTTTTTACCAGCTTAGCTACGGAAGCGGGAGTTCTACCACTGTCCGATGTCACACATGATCGGAAGTCAGAAGTCGGAAGTATGGGAAATTGTTAATTGGAAGCTAAAAACCGAAAATCGGAACTGACCGCATTTGAGATTGGTTGGGAAGAAACCGAATTTCAGATTTTGGTTGGTTCTCTGAAATTTTGGGCTGGTTCCAAGAATAGTTAATTGCAATTTCAAGAAAAACAACCGGAAAACGGAAGATTTATTGTTTCACTCTGTTCATCCTCAATAAACATTCATTTCCATGTTCAACAAAAAACTACAATTTCAGATTTTCAGAAAAAAACAAGATTATTTACAAAAATCTACTGCCAAGCATGATTATTAATGTGACGGTGATGACGATGATTAGATGAAGCTTGACCAGTTGATTTTATCATTGACGAGTTGTTCGCATACGACACTGATACGATATCATTAGTCCGTTTGAGTGCGCGGCGTACTAGCCAACTTTCCAGTGCGTACCCACTCATTTTACAGACCAAAATTAATGAACCAAATTGTGCGGAAAGAGCTGGAAACTTGACAGTAAAACCAGCAGGTACAATGTCAAAAATAATGATGATTAGAGTGTCGATTAGTGCGAGATAATTGGCCTGACAGAGAAAAATTGAGTTAAACGTTTTTTTTTTTTTGAAAAACTCACTCTTTCCAGATCTCGACTTTTTGGCCCTTTTTGTGTGCAATGATTCCAAATGAATAGCTTAACGGCAAGTATGAGAGATGTTAAGGCAATGATTGCGTGGGATACCTGAAGTAAGATGGGACCATGTATTTGCAGAGAGCGTTCTATTTTTAGATTTTTTTTTTGAAAATTTCATTAACATTTCAA</canonical>
            <polymorphic>TACATATTTTTGTTATGAAAAGTTGTATAATTAAATAATAACATATTTTTTAAAAATATTGCTGCAAAAAAACCCCACTCAAGGAGTTGAACTTGTGGGTCCAACGTTAGAGGTGCCACTTTTTTTACCAGCTTAGCTACGGAAGCGGGAGTTCTACCACTGTCCGATGTCACACATGATCGGAAGTCAGAAGTCGGAAGTATGGGAAATTGTTAATTGGAAGCTAAAAACCGAAAATCGGAACTGACCGCATTTGAGATTGGTTGGGAAGAAACCGAATTTCAGATTTTGGTTGGTTCTCTGAAATTTTGGGCTGGTTCCAAGAATAGTTAATTGCAATTTCAAGAAAAACAACCGGAAAACGGAAGATTTATTGTTTCACTCTGTTCATCCTCAATAAACATTCATTTCCATGTTCAACAAAAAACTACAATTTCAGATTTTCAGAAAAAAACAAGATTATTTACAAAAATCTACTGCCAAGCATGATTATTAATGTKACGGTGATGACGATGATTAGATGAAGCTTGACCAGTTGATTTTATCATTGACGAGTTGTTCGCATACGACACTGATACGATATCATTAGTCCGTTTGAGTGCGCGGCGTACTAGCCAACTTTCCAGTGCGTACCCACTCATTTTACAGACCAAAATTAATGAACCAAATTGTGCGGAAAGAGCTGGAAACTTGACAGTAAAACCAGCAGGTACAATGTCAAAAATAATGATGATTAGAGTGTCGATTAGTGCGAGATAATTGGCCTGACAGAGAAAAATTGAGTTAAACGTTTTTTTTTTTTTGAAAAACTCACTCTTTCCAGATCTCGACTTTTTGGCCCTTTTTGTGTGCAATGATTCCAAATGAATAGCTTAACGGCAAGTATGAGAGATGTTAAGGCAATGATTGCGTGGGATACCTGAAGTAAGATGGGACCATGTATTTGCAGAGAGCGTTCTATTTTTAGATTTTTTTTTTGAAAATTTCATTAACATTTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>207 119 87 77 68 65 62 62 41 37 36 30 27 20 18 13 10 8 6 3 2 2</canonical_bands>
                <polymorphic_bands>207 125 87 77 68 65 62 62 41 37 36 30 27 20 18 13 10 8 3 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>503 329 168</canonical_bands>
                <polymorphic_bands>832 168</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCAATTTCAAGAAAAACAAC</pcr_primer_p1>
		<pcr_primer_p2>TGATATCGTATCAGTGTCGTATG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGCAATTTCAAGAAAAACAACCGGAAAACGGAAGATTTATTGTTTCACTCTGTTCATCCTCAATAAACATTCATTTCCATGTTCAACAAAAAACTACAATTTCAGATTTTCAGAAAAAAACAAGATTATTTACAAAAATCTACTGCCAAGCATGATTATTAATGTGACGGTGATGACGATGATTAGATGAAGCTTGACCAGTTGATTTTATCATTGACGAGTTGTTCGCATACGACACTGATACGATATCA</canonical_amplicon>
		<polymorphic_amplicon>TGCAATTTCAAGAAAAACAACCGGAAAACGGAAGATTTATTGTTTCACTCTGTTCATCCTCAATAAACATTCATTTCCATGTTCAACAAAAAACTACAATTTCAGATTTTCAGAAAAAAACAAGATTATTTACAAAAATCTACTGCCAAGCATGATTATTAATGTKACGGTGATGACGATGATTAGATGAAGCTTGACCAGTTGATTTTATCATTGACGAGTTGTTCGCATACGACACTGATACGATATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4365</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>175710</contig_pos>
        <strand>+</strand>
        <context>AAATTTTGGG[C/T]TGGTTCCAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGGAAGAAACCGAATTTCAGATTTTGGTTGGTTCTCTGAAATTTTGGG</left_flank>
        <right_flank>TGGTTCCAAGAATAGTTAATTGCAATTTCAAGAAAAACAACCGGAAAACG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTAAATTTTTGAACAACTTCGGTTTCTGTTTTTCTTTCTTGGAAAATTGGTTAGGAACAAAAACACGATGTAGGAAAAAAAATCGAAATTCTCAAAACAACAAGTTTCGTATTTTTGTTACATGTTCTGTTCTGATGGTTGGTAATGTTTCTTCTTTAAATATTACTCATATGAGTTTCAAAGTACATATTTTTGTTATGAAAAGTTGTATAATTAAATAATAACATATTTTTTAAAAATATTGCTGCAAAAAAACCCCACTCAAGGAGTTGAACTTGTGGGTCCAACGTTAGAGGTGCCACTTTTTTTACCAGCTTAGCTACGGAAGCGGGAGTTCTACCACTGTCCGATGTCACACATGATCGGAAGTCAGAAGTCGGAAGTATGGGAAATTGTTAATTGGAAGCTAAAAACCGAAAATCGGAACTGACCGCATTTGAGATTGGTTGGGAAGAAACCGAATTTCAGATTTTGGTTGGTTCTCTGAAATTTTGGGCTGGTTCCAAGAATAGTTAATTGCAATTTCAAGAAAAACAACCGGAAAACGGAAGATTTATTGTTTCACTCTGTTCATCCTCAATAAACATTCATTTCCATGTTCAACAAAAAACTACAATTTCAGATTTTCAGAAAAAAACAAGATTATTTACAAAAATCTACTGCCAAGCATGATTATTAATGTGACGGTGATGACGATGATTAGATGAAGCTTGACCAGTTGATTTTATCATTGACGAGTTGTTCGCATACGACACTGATACGATATCATTAGTCCGTTTGAGTGCGCGGCGTACTAGCCAACTTTCCAGTGCGTACCCACTCATTTTACAGACCAAAATTAATGAACCAAATTGTGCGGAAAGAGCTGGAAACTTGACAGTAAAACCAGCAGGTACAATGTCAAAAATAATGATGATTAGAGTGTCGATTAGTGCGAGATAATTGGCCTGACAGAGAAAAATTGAGTTAAACGTTTTTTTTTTTTTGAAAAACTCAC</canonical>
            <polymorphic>TTTCTAAATTTTTGAACAACTTCGGTTTCTGTTTTTCTTTCTTGGAAAATTGGTTAGGAACAAAAACACGATGTAGGAAAAAAAATCGAAATTCTCAAAACAACAAGTTTCGTATTTTTGTTACATGTTCTGTTCTGATGGTTGGTAATGTTTCTTCTTTAAATATTACTCATATGAGTTTCAAAGTACATATTTTTGTTATGAAAAGTTGTATAATTAAATAATAACATATTTTTTAAAAATATTGCTGCAAAAAAACCCCACTCAAGGAGTTGAACTTGTGGGTCCAACGTTAGAGGTGCCACTTTTTTTACCAGCTTAGCTACGGAAGCGGGAGTTCTACCACTGTCCGATGTCACACATGATCGGAAGTCAGAAGTCGGAAGTATGGGAAATTGTTAATTGGAAGCTAAAAACCGAAAATCGGAACTGACCGCATTTGAGATTGGTTGGGAAGAAACCGAATTTCAGATTTTGGTTGGTTCTCTGAAATTTTGGGYTGGTTCCAAGAATAGTTAATTGCAATTTCAAGAAAAACAACCGGAAAACGGAAGATTTATTGTTTCACTCTGTTCATCCTCAATAAACATTCATTTCCATGTTCAACAAAAAACTACAATTTCAGATTTTCAGAAAAAAACAAGATTATTTACAAAAATCTACTGCCAAGCATGATTATTAATGTGACGGTGATGACGATGATTAGATGAAGCTTGACCAGTTGATTTTATCATTGACGAGTTGTTCGCATACGACACTGATACGATATCATTAGTCCGTTTGAGTGCGCGGCGTACTAGCCAACTTTCCAGTGCGTACCCACTCATTTTACAGACCAAAATTAATGAACCAAATTGTGCGGAAAGAGCTGGAAACTTGACAGTAAAACCAGCAGGTACAATGTCAAAAATAATGATGATTAGAGTGTCGATTAGTGCGAGATAATTGGCCTGACAGAGAAAAATTGAGTTAAACGTTTTTTTTTTTTTGAAAAACTCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>317 213 90 88 87 81 68 51 5</canonical_bands>
                <polymorphic_bands>317 303 88 87 81 68 51 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTCTACCACTGTCCGATGT</pcr_primer_p1>
		<pcr_primer_p2>AGGATGAACAGAGTGAAACAATA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGTTCTACCACTGTCCGATGTCACACATGATCGGAAGTCAGAAGTCGGAAGTATGGGAAATTGTTAATTGGAAGCTAAAAACCGAAAATCGGAACTGACCGCATTTGAGATTGGTTGGGAAGAAACCGAATTTCAGATTTTGGTTGGTTCTCTGAAATTTTGGGCTGGTTCCAAGAATAGTTAATTGCAATTTCAAGAAAAACAACCGGAAAACGGAAGATTTATTGTTTCACTCTGTTCATCCT</canonical_amplicon>
		<polymorphic_amplicon>AGTTCTACCACTGTCCGATGTCACACATGATCGGAAGTCAGAAGTCGGAAGTATGGGAAATTGTTAATTGGAAGCTAAAAACCGAAAATCGGAACTGACCGCATTTGAGATTGGTTGGGAAGAAACCGAATTTCAGATTTTGGTTGGTTCTCTGAAATTTTGGGYTGGTTCCAAGAATAGTTAATTGCAATTTCAAGAAAAACAACCGGAAAACGGAAGATTTATTGTTTCACTCTGTTCATCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4366</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>311989</contig_pos>
        <strand>+</strand>
        <context>TTACCACTTT[C/T]GAAATCTGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCAATTAGTCCACTTTCAATATTCCAAAATTTTCAAAGTTTACCACTTT</left_flank>
        <right_flank>GAAATCTGTTCCTCCAACCATTCCCTATTTCTTTTCCTATTCATTTTCCC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTCTGGAGTCTCTCTGGGAATATATCCATCTTCATAGTTGGGTCCAGAATGTATTTCTTTTGCGGAGAGACCCTTTTTGAGTTGTATCCCAAACTTCCTGATCTACTCAACTACTGTAAACACTCTAATAAAATGACCCTTCTAGTTTGGGCCAGTTTAGCTCGGTTTCTTTGAAAGATATAAAAAAGGTAAACTAGAAACATATTTTTGATATTATAATGAACATTTTGACTGTTGACCACTTTTTGATATCTGTTATAGGAACTGAGATACATGAGCTCAAAGTTGGCGGTTTGGAGGACGGCATTGTTTAGGGTACATTTTGAGTTGTTAACCCCTTTTAGTGTTAACGGTAGGTATCTCGGCTACTCTTGGGAAGTATTGAAGATTTCAAAAAAAGTTTGGTTCTTTTGAAAATGACCTATTTTAACAATCTCAAAACATTTTCTCAATTAGTCCACTTTCAATATTCCAAAATTTTCAAAGTTTACCACTTTCGAAATCTGTTCCTCCAACCATTCCCTATTTCTTTTCCTATTCATTTTCCCCTCTTTTCTCAATAATAAACATGACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAACACAACTTTTTAGATGTTGTATAGTGGGATCTGTGTTTAGTGGCCTATATTTTCAGCTCTGTAGAGTTCGGTCAGTACCAGCACTACCATAACCTGGTAAAAACGGTGGTGGCCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGATTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGGAAAAAAGCGAAATCGCATGTGCCAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAA</canonical>
            <polymorphic>TTGTCTGGAGTCTCTCTGGGAATATATCCATCTTCATAGTTGGGTCCAGAATGTATTTCTTTTGCGGAGAGACCCTTTTTGAGTTGTATCCCAAACTTCCTGATCTACTCAACTACTGTAAACACTCTAATAAAATGACCCTTCTAGTTTGGGCCAGTTTAGCTCGGTTTCTTTGAAAGATATAAAAAAGGTAAACTAGAAACATATTTTTGATATTATAATGAACATTTTGACTGTTGACCACTTTTTGATATCTGTTATAGGAACTGAGATACATGAGCTCAAAGTTGGCGGTTTGGAGGACGGCATTGTTTAGGGTACATTTTGAGTTGTTAACCCCTTTTAGTGTTAACGGTAGGTATCTCGGCTACTCTTGGGAAGTATTGAAGATTTCAAAAAAAGTTTGGTTCTTTTGAAAATGACCTATTTTAACAATCTCAAAACATTTTCTCAATTAGTCCACTTTCAATATTCCAAAATTTTCAAAGTTTACCACTTTYGAAATCTGTTCCTCCAACCATTCCCTATTTCTTTTCCTATTCATTTTCCCCTCTTTTCTCAATAATAAACATGACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAACACAACTTTTTAGATGTTGTATAGTGGGATCTGTGTTTAGTGGCCTATATTTTCAGCTCTGTAGAGTTCGGTCAGTACCAGCACTACCATAACCTGGTAAAAACGGTGGTGGCCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGATTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGGAAAAAAGCGAAATCGCATGTGCCAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAACATTTTCTCAATTAGTCC</pcr_primer_p1>
		<pcr_primer_p2>GTTGTTGTGGGAGCTATAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAAACATTTTCTCAATTAGTCCACTTTCAATATTCCAAAATTTTCAAAGTTTACCACTTTCGAAATCTGTTCCTCCAACCATTCCCTATTTCTTTTCCTATTCATTTTCCCCTCTTTTCTCAATAATAAACATGACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAAC</canonical_amplicon>
		<polymorphic_amplicon>CAAAACATTTTCTCAATTAGTCCACTTTCAATATTCCAAAATTTTCAAAGTTTACCACTTTYGAAATCTGTTCCTCCAACCATTCCCTATTTCTTTTCCTATTCATTTTCCCCTCTTTTCTCAATAATAAACATGACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4367</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>312012</contig_pos>
        <strand>+</strand>
        <context>TCCAACCATT[C/T]CCTATTTCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCAAAATTTTCAAAGTTTACCACTTTCGAAATCTGTTCCTCCAACCATT</left_flank>
        <right_flank>CCTATTTCTTTTCCTATTCATTTTCCCCTCTTTTCTCAATAATAAACATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATCCATCTTCATAGTTGGGTCCAGAATGTATTTCTTTTGCGGAGAGACCCTTTTTGAGTTGTATCCCAAACTTCCTGATCTACTCAACTACTGTAAACACTCTAATAAAATGACCCTTCTAGTTTGGGCCAGTTTAGCTCGGTTTCTTTGAAAGATATAAAAAAGGTAAACTAGAAACATATTTTTGATATTATAATGAACATTTTGACTGTTGACCACTTTTTGATATCTGTTATAGGAACTGAGATACATGAGCTCAAAGTTGGCGGTTTGGAGGACGGCATTGTTTAGGGTACATTTTGAGTTGTTAACCCCTTTTAGTGTTAACGGTAGGTATCTCGGCTACTCTTGGGAAGTATTGAAGATTTCAAAAAAAGTTTGGTTCTTTTGAAAATGACCTATTTTAACAATCTCAAAACATTTTCTCAATTAGTCCACTTTCAATATTCCAAAATTTTCAAAGTTTACCACTTTCGAAATCTGTTCCTCCAACCATTCCCTATTTCTTTTCCTATTCATTTTCCCCTCTTTTCTCAATAATAAACATGACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAACACAACTTTTTAGATGTTGTATAGTGGGATCTGTGTTTAGTGGCCTATATTTTCAGCTCTGTAGAGTTCGGTCAGTACCAGCACTACCATAACCTGGTAAAAACGGTGGTGGCCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGATTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGGAAAAAAGCGAAATCGCATGTGCCAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAA</canonical>
            <polymorphic>ATATCCATCTTCATAGTTGGGTCCAGAATGTATTTCTTTTGCGGAGAGACCCTTTTTGAGTTGTATCCCAAACTTCCTGATCTACTCAACTACTGTAAACACTCTAATAAAATGACCCTTCTAGTTTGGGCCAGTTTAGCTCGGTTTCTTTGAAAGATATAAAAAAGGTAAACTAGAAACATATTTTTGATATTATAATGAACATTTTGACTGTTGACCACTTTTTGATATCTGTTATAGGAACTGAGATACATGAGCTCAAAGTTGGCGGTTTGGAGGACGGCATTGTTTAGGGTACATTTTGAGTTGTTAACCCCTTTTAGTGTTAACGGTAGGTATCTCGGCTACTCTTGGGAAGTATTGAAGATTTCAAAAAAAGTTTGGTTCTTTTGAAAATGACCTATTTTAACAATCTCAAAACATTTTCTCAATTAGTCCACTTTCAATATTCCAAAATTTTCAAAGTTTACCACTTTCGAAATCTGTTCCTCCAACCATTYCCTATTTCTTTTCCTATTCATTTTCCCCTCTTTTCTCAATAATAAACATGACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAACACAACTTTTTAGATGTTGTATAGTGGGATCTGTGTTTAGTGGCCTATATTTTCAGCTCTGTAGAGTTCGGTCAGTACCAGCACTACCATAACCTGGTAAAAACGGTGGTGGCCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGATTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGGAAAAAAGCGAAATCGCATGTGCCAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAACATTTTCTCAATTAGTCC</pcr_primer_p1>
		<pcr_primer_p2>GTTGTTGTGGGAGCTATAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAAACATTTTCTCAATTAGTCCACTTTCAATATTCCAAAATTTTCAAAGTTTACCACTTTCGAAATCTGTTCCTCCAACCATTCCCTATTTCTTTTCCTATTCATTTTCCCCTCTTTTCTCAATAATAAACATGACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAAC</canonical_amplicon>
		<polymorphic_amplicon>CAAAACATTTTCTCAATTAGTCCACTTTCAATATTCCAAAATTTTCAAAGTTTACCACTTTCGAAATCTGTTCCTCCAACCATTYCCTATTTCTTTTCCTATTCATTTTCCCCTCTTTTCTCAATAATAAACATGACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4368</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>312032</contig_pos>
        <strand>+</strand>
        <context>TTTCCTATTC[A/C]TTTTCCCCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCACTTTCGAAATCTGTTCCTCCAACCATTCCCTATTTCTTTTCCTATTC</left_flank>
        <right_flank>TTTTCCCCTCTTTTCTCAATAATAAACATGACATTTCCTGCCCCACCACT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCAGAATGTATTTCTTTTGCGGAGAGACCCTTTTTGAGTTGTATCCCAAACTTCCTGATCTACTCAACTACTGTAAACACTCTAATAAAATGACCCTTCTAGTTTGGGCCAGTTTAGCTCGGTTTCTTTGAAAGATATAAAAAAGGTAAACTAGAAACATATTTTTGATATTATAATGAACATTTTGACTGTTGACCACTTTTTGATATCTGTTATAGGAACTGAGATACATGAGCTCAAAGTTGGCGGTTTGGAGGACGGCATTGTTTAGGGTACATTTTGAGTTGTTAACCCCTTTTAGTGTTAACGGTAGGTATCTCGGCTACTCTTGGGAAGTATTGAAGATTTCAAAAAAAGTTTGGTTCTTTTGAAAATGACCTATTTTAACAATCTCAAAACATTTTCTCAATTAGTCCACTTTCAATATTCCAAAATTTTCAAAGTTTACCACTTTCGAAATCTGTTCCTCCAACCATTCCCTATTTCTTTTCCTATTCATTTTCCCCTCTTTTCTCAATAATAAACATGACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAACACAACTTTTTAGATGTTGTATAGTGGGATCTGTGTTTAGTGGCCTATATTTTCAGCTCTGTAGAGTTCGGTCAGTACCAGCACTACCATAACCTGGTAAAAACGGTGGTGGCCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGATTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGGAAAAAAGCGAAATCGCATGTGCCAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATT</canonical>
            <polymorphic>GTCCAGAATGTATTTCTTTTGCGGAGAGACCCTTTTTGAGTTGTATCCCAAACTTCCTGATCTACTCAACTACTGTAAACACTCTAATAAAATGACCCTTCTAGTTTGGGCCAGTTTAGCTCGGTTTCTTTGAAAGATATAAAAAAGGTAAACTAGAAACATATTTTTGATATTATAATGAACATTTTGACTGTTGACCACTTTTTGATATCTGTTATAGGAACTGAGATACATGAGCTCAAAGTTGGCGGTTTGGAGGACGGCATTGTTTAGGGTACATTTTGAGTTGTTAACCCCTTTTAGTGTTAACGGTAGGTATCTCGGCTACTCTTGGGAAGTATTGAAGATTTCAAAAAAAGTTTGGTTCTTTTGAAAATGACCTATTTTAACAATCTCAAAACATTTTCTCAATTAGTCCACTTTCAATATTCCAAAATTTTCAAAGTTTACCACTTTCGAAATCTGTTCCTCCAACCATTCCCTATTTCTTTTCCTATTCMTTTTCCCCTCTTTTCTCAATAATAAACATGACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAACACAACTTTTTAGATGTTGTATAGTGGGATCTGTGTTTAGTGGCCTATATTTTCAGCTCTGTAGAGTTCGGTCAGTACCAGCACTACCATAACCTGGTAAAAACGGTGGTGGCCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGATTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGGAAAAAAGCGAAATCGCATGTGCCAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAACATTTTCTCAATTAGTCC</pcr_primer_p1>
		<pcr_primer_p2>GTTGTTGTGGGAGCTATAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAAACATTTTCTCAATTAGTCCACTTTCAATATTCCAAAATTTTCAAAGTTTACCACTTTCGAAATCTGTTCCTCCAACCATTCCCTATTTCTTTTCCTATTCATTTTCCCCTCTTTTCTCAATAATAAACATGACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAAC</canonical_amplicon>
		<polymorphic_amplicon>CAAAACATTTTCTCAATTAGTCCACTTTCAATATTCCAAAATTTTCAAAGTTTACCACTTTCGAAATCTGTTCCTCCAACCATTCCCTATTTCTTTTCCTATTCMTTTTCCCCTCTTTTCTCAATAATAAACATGACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4369</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>312071</contig_pos>
        <strand>+</strand>
        <context>TGACATTTCC[G/T]GCCCCACCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTCCTATTCATTTTCCCCTCTTTTCTCAATAATAAACATGACATTTCC</left_flank>
        <right_flank>GCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGTATCCCAAACTTCCTGATCTACTCAACTACTGTAAACACTCTAATAAAATGACCCTTCTAGTTTGGGCCAGTTTAGCTCGGTTTCTTTGAAAGATATAAAAAAGGTAAACTAGAAACATATTTTTGATATTATAATGAACATTTTGACTGTTGACCACTTTTTGATATCTGTTATAGGAACTGAGATACATGAGCTCAAAGTTGGCGGTTTGGAGGACGGCATTGTTTAGGGTACATTTTGAGTTGTTAACCCCTTTTAGTGTTAACGGTAGGTATCTCGGCTACTCTTGGGAAGTATTGAAGATTTCAAAAAAAGTTTGGTTCTTTTGAAAATGACCTATTTTAACAATCTCAAAACATTTTCTCAATTAGTCCACTTTCAATATTCCAAAATTTTCAAAGTTTACCACTTTCGAAATCTGTTCCTCCAACCATTCCCTATTTCTTTTCCTATTCATTTTCCCCTCTTTTCTCAATAATAAACATGACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAACACAACTTTTTAGATGTTGTATAGTGGGATCTGTGTTTAGTGGCCTATATTTTCAGCTCTGTAGAGTTCGGTCAGTACCAGCACTACCATAACCTGGTAAAAACGGTGGTGGCCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGATTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGGAAAAAAGCGAAATCGCATGTGCCAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAGGCAAGCCTTTTTAGTATTTTCTTTCG</canonical>
            <polymorphic>GTTGTATCCCAAACTTCCTGATCTACTCAACTACTGTAAACACTCTAATAAAATGACCCTTCTAGTTTGGGCCAGTTTAGCTCGGTTTCTTTGAAAGATATAAAAAAGGTAAACTAGAAACATATTTTTGATATTATAATGAACATTTTGACTGTTGACCACTTTTTGATATCTGTTATAGGAACTGAGATACATGAGCTCAAAGTTGGCGGTTTGGAGGACGGCATTGTTTAGGGTACATTTTGAGTTGTTAACCCCTTTTAGTGTTAACGGTAGGTATCTCGGCTACTCTTGGGAAGTATTGAAGATTTCAAAAAAAGTTTGGTTCTTTTGAAAATGACCTATTTTAACAATCTCAAAACATTTTCTCAATTAGTCCACTTTCAATATTCCAAAATTTTCAAAGTTTACCACTTTCGAAATCTGTTCCTCCAACCATTCCCTATTTCTTTTCCTATTCATTTTCCCCTCTTTTCTCAATAATAAACATGACATTTCCKGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAACACAACTTTTTAGATGTTGTATAGTGGGATCTGTGTTTAGTGGCCTATATTTTCAGCTCTGTAGAGTTCGGTCAGTACCAGCACTACCATAACCTGGTAAAAACGGTGGTGGCCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGATTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGGAAAAAAGCGAAATCGCATGTGCCAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAGGCAAGCCTTTTTAGTATTTTCTTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAACATTTTCTCAATTAGTCC</pcr_primer_p1>
		<pcr_primer_p2>GTTGTTGTGGGAGCTATAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAAACATTTTCTCAATTAGTCCACTTTCAATATTCCAAAATTTTCAAAGTTTACCACTTTCGAAATCTGTTCCTCCAACCATTCCCTATTTCTTTTCCTATTCATTTTCCCCTCTTTTCTCAATAATAAACATGACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAAC</canonical_amplicon>
		<polymorphic_amplicon>CAAAACATTTTCTCAATTAGTCCACTTTCAATATTCCAAAATTTTCAAAGTTTACCACTTTCGAAATCTGTTCCTCCAACCATTCCCTATTTCTTTTCCTATTCATTTTCCCCTCTTTTCTCAATAATAAACATGACATTTCCKGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4370</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>312112</contig_pos>
        <strand>+</strand>
        <context>CCGACGTTTT[G/T]GTGACATATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTT</left_flank>
        <right_flank>GTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCTAATAAAATGACCCTTCTAGTTTGGGCCAGTTTAGCTCGGTTTCTTTGAAAGATATAAAAAAGGTAAACTAGAAACATATTTTTGATATTATAATGAACATTTTGACTGTTGACCACTTTTTGATATCTGTTATAGGAACTGAGATACATGAGCTCAAAGTTGGCGGTTTGGAGGACGGCATTGTTTAGGGTACATTTTGAGTTGTTAACCCCTTTTAGTGTTAACGGTAGGTATCTCGGCTACTCTTGGGAAGTATTGAAGATTTCAAAAAAAGTTTGGTTCTTTTGAAAATGACCTATTTTAACAATCTCAAAACATTTTCTCAATTAGTCCACTTTCAATATTCCAAAATTTTCAAAGTTTACCACTTTCGAAATCTGTTCCTCCAACCATTCCCTATTTCTTTTCCTATTCATTTTCCCCTCTTTTCTCAATAATAAACATGACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAACACAACTTTTTAGATGTTGTATAGTGGGATCTGTGTTTAGTGGCCTATATTTTCAGCTCTGTAGAGTTCGGTCAGTACCAGCACTACCATAACCTGGTAAAAACGGTGGTGGCCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGATTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGGAAAAAAGCGAAATCGCATGTGCCAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAGGCAAGCCTTTTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAAGAATCTATTTCGAAAATACCT</canonical>
            <polymorphic>ACTCTAATAAAATGACCCTTCTAGTTTGGGCCAGTTTAGCTCGGTTTCTTTGAAAGATATAAAAAAGGTAAACTAGAAACATATTTTTGATATTATAATGAACATTTTGACTGTTGACCACTTTTTGATATCTGTTATAGGAACTGAGATACATGAGCTCAAAGTTGGCGGTTTGGAGGACGGCATTGTTTAGGGTACATTTTGAGTTGTTAACCCCTTTTAGTGTTAACGGTAGGTATCTCGGCTACTCTTGGGAAGTATTGAAGATTTCAAAAAAAGTTTGGTTCTTTTGAAAATGACCTATTTTAACAATCTCAAAACATTTTCTCAATTAGTCCACTTTCAATATTCCAAAATTTTCAAAGTTTACCACTTTCGAAATCTGTTCCTCCAACCATTCCCTATTTCTTTTCCTATTCATTTTCCCCTCTTTTCTCAATAATAAACATGACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTKGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAACACAACTTTTTAGATGTTGTATAGTGGGATCTGTGTTTAGTGGCCTATATTTTCAGCTCTGTAGAGTTCGGTCAGTACCAGCACTACCATAACCTGGTAAAAACGGTGGTGGCCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGATTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGGAAAAAAGCGAAATCGCATGTGCCAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAGGCAAGCCTTTTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAAGAATCTATTTCGAAAATACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAACATTTTCTCAATTAGTCC</pcr_primer_p1>
		<pcr_primer_p2>GTTGTTGTGGGAGCTATAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAAACATTTTCTCAATTAGTCCACTTTCAATATTCCAAAATTTTCAAAGTTTACCACTTTCGAAATCTGTTCCTCCAACCATTCCCTATTTCTTTTCCTATTCATTTTCCCCTCTTTTCTCAATAATAAACATGACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAAC</canonical_amplicon>
		<polymorphic_amplicon>CAAAACATTTTCTCAATTAGTCCACTTTCAATATTCCAAAATTTTCAAAGTTTACCACTTTCGAAATCTGTTCCTCCAACCATTCCCTATTTCTTTTCCTATTCATTTTCCCCTCTTTTCTCAATAATAAACATGACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTKGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4372</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>312336</contig_pos>
        <strand>+</strand>
        <context>CTGACCAAGA[C/T]TTATTCTCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGA</left_flank>
        <right_flank>TTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTAACGGTAGGTATCTCGGCTACTCTTGGGAAGTATTGAAGATTTCAAAAAAAGTTTGGTTCTTTTGAAAATGACCTATTTTAACAATCTCAAAACATTTTCTCAATTAGTCCACTTTCAATATTCCAAAATTTTCAAAGTTTACCACTTTCGAAATCTGTTCCTCCAACCATTCCCTATTTCTTTTCCTATTCATTTTCCCCTCTTTTCTCAATAATAAACATGACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAACACAACTTTTTAGATGTTGTATAGTGGGATCTGTGTTTAGTGGCCTATATTTTCAGCTCTGTAGAGTTCGGTCAGTACCAGCACTACCATAACCTGGTAAAAACGGTGGTGGCCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGATTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGGAAAAAAGCGAAATCGCATGTGCCAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAGGCAAGCCTTTTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAAGAATCTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTATATAGCCTAGATTCCAGAAAACTCAGCTTCCCCTTGGACCAAAGACCTCGATGTTCCTCTTCCAATTCTCCATCGTTTCTCTTCACTTTTCTTTACTGCTTTGCTATCATCTGACAATCAGTGTCGCGGGGCACATACAGAGTGAGACCCCAACACCATACATGTACACACAAACGCCGCCTTATCAATCAATC</canonical>
            <polymorphic>GTTAACGGTAGGTATCTCGGCTACTCTTGGGAAGTATTGAAGATTTCAAAAAAAGTTTGGTTCTTTTGAAAATGACCTATTTTAACAATCTCAAAACATTTTCTCAATTAGTCCACTTTCAATATTCCAAAATTTTCAAAGTTTACCACTTTCGAAATCTGTTCCTCCAACCATTCCCTATTTCTTTTCCTATTCATTTTCCCCTCTTTTCTCAATAATAAACATGACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAACACAACTTTTTAGATGTTGTATAGTGGGATCTGTGTTTAGTGGCCTATATTTTCAGCTCTGTAGAGTTCGGTCAGTACCAGCACTACCATAACCTGGTAAAAACGGTGGTGGCCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGAYTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGGAAAAAAGCGAAATCGCATGTGCCAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAGGCAAGCCTTTTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAAGAATCTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTATATAGCCTAGATTCCAGAAAACTCAGCTTCCCCTTGGACCAAAGACCTCGATGTTCCTCTTCCAATTCTCCATCGTTTCTCTTCACTTTTCTTTACTGCTTTGCTATCATCTGACAATCAGTGTCGCGGGGCACATACAGAGTGAGACCCCAACACCATACATGTACACACAAACGCCGCCTTATCAATCAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCCAATCCTTTTATAGCTC</pcr_primer_p1>
		<pcr_primer_p2>CCAAGTTTTCTAGGCTCTTACA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCCAATCCTTTTATAGCTCCCACAACAACACAACTTTTTAGATGTTGTATAGTGGGATCTGTGTTTAGTGGCCTATATTTTCAGCTCTGTAGAGTTCGGTCAGTACCAGCACTACCATAACCTGGTAAAAACGGTGGTGGCCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGATTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGG</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCCAATCCTTTTATAGCTCCCACAACAACACAACTTTTTAGATGTTGTATAGTGGGATCTGTGTTTAGTGGCCTATATTTTCAGCTCTGTAGAGTTCGGTCAGTACCAGCACTACCATAACCTGGTAAAAACGGTGGTGGCCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGAYTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4373</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>312468</contig_pos>
        <strand>+</strand>
        <context>CCAAACTTGA[A/C]ATAGTCTCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGA</left_flank>
        <right_flank>ATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCAAAGTTTACCACTTTCGAAATCTGTTCCTCCAACCATTCCCTATTTCTTTTCCTATTCATTTTCCCCTCTTTTCTCAATAATAAACATGACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAACACAACTTTTTAGATGTTGTATAGTGGGATCTGTGTTTAGTGGCCTATATTTTCAGCTCTGTAGAGTTCGGTCAGTACCAGCACTACCATAACCTGGTAAAAACGGTGGTGGCCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGATTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGGAAAAAAGCGAAATCGCATGTGCCAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAGGCAAGCCTTTTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAAGAATCTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTATATAGCCTAGATTCCAGAAAACTCAGCTTCCCCTTGGACCAAAGACCTCGATGTTCCTCTTCCAATTCTCCATCGTTTCTCTTCACTTTTCTTTACTGCTTTGCTATCATCTGACAATCAGTGTCGCGGGGCACATACAGAGTGAGACCCCAACACCATACATGTACACACAAACGCCGCCTTATCAATCAATCTGCATAACTAGATCACTCCCCCTCTCTCCCTTCTCTTTCGATACAGCGGTCTTTCTTCCTCCTCCTGCTTGTGCTGCCTACCAACTAACCAAACGATAATGGCCTTTTTTTCTGTATTGAAGTTTTTCACGT</canonical>
            <polymorphic>TTTTCAAAGTTTACCACTTTCGAAATCTGTTCCTCCAACCATTCCCTATTTCTTTTCCTATTCATTTTCCCCTCTTTTCTCAATAATAAACATGACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAACACAACTTTTTAGATGTTGTATAGTGGGATCTGTGTTTAGTGGCCTATATTTTCAGCTCTGTAGAGTTCGGTCAGTACCAGCACTACCATAACCTGGTAAAAACGGTGGTGGCCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGATTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGGAAAAAAGCGAAATCGCATGTGCCAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAMATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAGGCAAGCCTTTTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAAGAATCTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTATATAGCCTAGATTCCAGAAAACTCAGCTTCCCCTTGGACCAAAGACCTCGATGTTCCTCTTCCAATTCTCCATCGTTTCTCTTCACTTTTCTTTACTGCTTTGCTATCATCTGACAATCAGTGTCGCGGGGCACATACAGAGTGAGACCCCAACACCATACATGTACACACAAACGCCGCCTTATCAATCAATCTGCATAACTAGATCACTCCCCCTCTCTCCCTTCTCTTTCGATACAGCGGTCTTTCTTCCTCCTCCTGCTTGTGCTGCCTACCAACTAACCAAACGATAATGGCCTTTTTTTCTGTATTGAAGTTTTTCACGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTAGAATCCAAATTAAGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAATTTAGGTTTTCTTGGTCAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGATTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGGAAAAAAGCGAAATCGCATGTGCCAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTT</canonical_amplicon>
		<polymorphic_amplicon>CCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGATTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGGAAAAAAGCGAAATCGCATGTGCCAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAMATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4374</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>312495</contig_pos>
        <strand>+</strand>
        <context>CAGAAAAACA[C/T]CWATGGACAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACA</left_flank>
        <right_flank>CTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTCCTCCAACCATTCCCTATTTCTTTTCCTATTCATTTTCCCCTCTTTTCTCAATAATAAACATGACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAACACAACTTTTTAGATGTTGTATAGTGGGATCTGTGTTTAGTGGCCTATATTTTCAGCTCTGTAGAGTTCGGTCAGTACCAGCACTACCATAACCTGGTAAAAACGGTGGTGGCCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGATTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGGAAAAAAGCGAAATCGCATGTGCCAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAGGCAAGCCTTTTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAAGAATCTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTATATAGCCTAGATTCCAGAAAACTCAGCTTCCCCTTGGACCAAAGACCTCGATGTTCCTCTTCCAATTCTCCATCGTTTCTCTTCACTTTTCTTTACTGCTTTGCTATCATCTGACAATCAGTGTCGCGGGGCACATACAGAGTGAGACCCCAACACCATACATGTACACACAAACGCCGCCTTATCAATCAATCTGCATAACTAGATCACTCCCCCTCTCTCCCTTCTCTTTCGATACAGCGGTCTTTCTTCCTCCTCCTGCTTGTGCTGCCTACCAACTAACCAAACGATAATGGCCTTTTTTTCTGTATTGAAGTTTTTCACGTTTTTTTTCTGGAAGTTTTGACACTGGA</canonical>
            <polymorphic>TGTTCCTCCAACCATTCCCTATTTCTTTTCCTATTCATTTTCCCCTCTTTTCTCAATAATAAACATGACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAACACAACTTTTTAGATGTTGTATAGTGGGATCTGTGTTTAGTGGCCTATATTTTCAGCTCTGTAGAGTTCGGTCAGTACCAGCACTACCATAACCTGGTAAAAACGGTGGTGGCCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGATTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGGAAAAAAGCGAAATCGCATGTGCCAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACAYCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAGGCAAGCCTTTTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAAGAATCTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTATATAGCCTAGATTCCAGAAAACTCAGCTTCCCCTTGGACCAAAGACCTCGATGTTCCTCTTCCAATTCTCCATCGTTTCTCTTCACTTTTCTTTACTGCTTTGCTATCATCTGACAATCAGTGTCGCGGGGCACATACAGAGTGAGACCCCAACACCATACATGTACACACAAACGCCGCCTTATCAATCAATCTGCATAACTAGATCACTCCCCCTCTCTCCCTTCTCTTTCGATACAGCGGTCTTTCTTCCTCCTCCTGCTTGTGCTGCCTACCAACTAACCAAACGATAATGGCCTTTTTTTCTGTATTGAAGTTTTTCACGTTTTTTTTCTGGAAGTTTTGACACTGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>143 90 88 82 58 56 54 47 41 41 39 38 35 32 25 25 24 13 11 11 10 9 8 7 5 3 3 2</canonical_bands>
                <polymorphic_bands>190 90 88 82 58 56 54 41 41 39 38 35 32 25 25 24 13 11 11 10 9 8 7 5 3 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAGGACCTCGTAGTAAGAAC</pcr_primer_p1>
		<pcr_primer_p2>GAGTTTTCTGGAATCTAGGCTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAGGCAAGCCTTTTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAAGAATCTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTATATAGCCTAGATTCCAGAAAACTC</canonical_amplicon>
		<polymorphic_amplicon>CAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACAYCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAGGCAAGCCTTTTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAAGAATCTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTATATAGCCTAGATTCCAGAAAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4375</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>312497</contig_pos>
        <strand>+</strand>
        <context>GAAAAACAYC[A/T]ATGGACAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACC</left_flank>
        <right_flank>ATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAGGC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCTCCAACCATTCCCTATTTCTTTTCCTATTCATTTTCCCCTCTTTTCTCAATAATAAACATGACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAACACAACTTTTTAGATGTTGTATAGTGGGATCTGTGTTTAGTGGCCTATATTTTCAGCTCTGTAGAGTTCGGTCAGTACCAGCACTACCATAACCTGGTAAAAACGGTGGTGGCCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGATTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGGAAAAAAGCGAAATCGCATGTGCCAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAGGCAAGCCTTTTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAAGAATCTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTATATAGCCTAGATTCCAGAAAACTCAGCTTCCCCTTGGACCAAAGACCTCGATGTTCCTCTTCCAATTCTCCATCGTTTCTCTTCACTTTTCTTTACTGCTTTGCTATCATCTGACAATCAGTGTCGCGGGGCACATACAGAGTGAGACCCCAACACCATACATGTACACACAAACGCCGCCTTATCAATCAATCTGCATAACTAGATCACTCCCCCTCTCTCCCTTCTCTTTCGATACAGCGGTCTTTCTTCCTCCTCCTGCTTGTGCTGCCTACCAACTAACCAAACGATAATGGCCTTTTTTTCTGTATTGAAGTTTTTCACGTTTTTTTTCTGGAAGTTTTGACACTGGACC</canonical>
            <polymorphic>TTCCTCCAACCATTCCCTATTTCTTTTCCTATTCATTTTCCCCTCTTTTCTCAATAATAAACATGACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAACACAACTTTTTAGATGTTGTATAGTGGGATCTGTGTTTAGTGGCCTATATTTTCAGCTCTGTAGAGTTCGGTCAGTACCAGCACTACCATAACCTGGTAAAAACGGTGGTGGCCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGATTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGGAAAAAAGCGAAATCGCATGTGCCAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCWATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAGGCAAGCCTTTTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAAGAATCTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTATATAGCCTAGATTCCAGAAAACTCAGCTTCCCCTTGGACCAAAGACCTCGATGTTCCTCTTCCAATTCTCCATCGTTTCTCTTCACTTTTCTTTACTGCTTTGCTATCATCTGACAATCAGTGTCGCGGGGCACATACAGAGTGAGACCCCAACACCATACATGTACACACAAACGCCGCCTTATCAATCAATCTGCATAACTAGATCACTCCCCCTCTCTCCCTTCTCTTTCGATACAGCGGTCTTTCTTCCTCCTCCTGCTTGTGCTGCCTACCAACTAACCAAACGATAATGGCCTTTTTTTCTGTATTGAAGTTTTTCACGTTTTTTTTCTGGAAGTTTTGACACTGGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAGGACCTCGTAGTAAGAAC</pcr_primer_p1>
		<pcr_primer_p2>GAGTTTTCTGGAATCTAGGCTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAGGCAAGCCTTTTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAAGAATCTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTATATAGCCTAGATTCCAGAAAACTC</canonical_amplicon>
		<polymorphic_amplicon>CAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCWATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAGGCAAGCCTTTTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAAGAATCTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTATATAGCCTAGATTCCAGAAAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4376</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>312538</contig_pos>
        <strand>+</strand>
        <context>AAATTTTAGG[G/T]AAATTAGGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGG</left_flank>
        <right_flank>AAATTAGGCAAGCCTTTTTAGTATTTTCTTTCGGGTCCAAGGGCTGACAT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCTTTTCTCAATAATAAACATGACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAACACAACTTTTTAGATGTTGTATAGTGGGATCTGTGTTTAGTGGCCTATATTTTCAGCTCTGTAGAGTTCGGTCAGTACCAGCACTACCATAACCTGGTAAAAACGGTGGTGGCCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGATTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGGAAAAAAGCGAAATCGCATGTGCCAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAGGCAAGCCTTTTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAAGAATCTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTATATAGCCTAGATTCCAGAAAACTCAGCTTCCCCTTGGACCAAAGACCTCGATGTTCCTCTTCCAATTCTCCATCGTTTCTCTTCACTTTTCTTTACTGCTTTGCTATCATCTGACAATCAGTGTCGCGGGGCACATACAGAGTGAGACCCCAACACCATACATGTACACACAAACGCCGCCTTATCAATCAATCTGCATAACTAGATCACTCCCCCTCTCTCCCTTCTCTTTCGATACAGCGGTCTTTCTTCCTCCTCCTGCTTGTGCTGCCTACCAACTAACCAAACGATAATGGCCTTTTTTTCTGTATTGAAGTTTTTCACGTTTTTTTTCTGGAAGTTTTGACACTGGACCATCAGCGATTTGCAGGATTTTTTCTAATTGTAAGGCTTGGA</canonical>
            <polymorphic>CCTCTTTTCTCAATAATAAACATGACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAACACAACTTTTTAGATGTTGTATAGTGGGATCTGTGTTTAGTGGCCTATATTTTCAGCTCTGTAGAGTTCGGTCAGTACCAGCACTACCATAACCTGGTAAAAACGGTGGTGGCCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGATTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGGAAAAAAGCGAAATCGCATGTGCCAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGKAAATTAGGCAAGCCTTTTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAAGAATCTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTATATAGCCTAGATTCCAGAAAACTCAGCTTCCCCTTGGACCAAAGACCTCGATGTTCCTCTTCCAATTCTCCATCGTTTCTCTTCACTTTTCTTTACTGCTTTGCTATCATCTGACAATCAGTGTCGCGGGGCACATACAGAGTGAGACCCCAACACCATACATGTACACACAAACGCCGCCTTATCAATCAATCTGCATAACTAGATCACTCCCCCTCTCTCCCTTCTCTTTCGATACAGCGGTCTTTCTTCCTCCTCCTGCTTGTGCTGCCTACCAACTAACCAAACGATAATGGCCTTTTTTTCTGTATTGAAGTTTTTCACGTTTTTTTTCTGGAAGTTTTGACACTGGACCATCAGCGATTTGCAGGATTTTTTCTAATTGTAAGGCTTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAGGACCTCGTAGTAAGAAC</pcr_primer_p1>
		<pcr_primer_p2>GAGTTTTCTGGAATCTAGGCTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAGGCAAGCCTTTTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAAGAATCTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTATATAGCCTAGATTCCAGAAAACTC</canonical_amplicon>
		<polymorphic_amplicon>CAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGKAAATTAGGCAAGCCTTTTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAAGAATCTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTATATAGCCTAGATTCCAGAAAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4377</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>312555</contig_pos>
        <strand>+</strand>
        <context>GGCAAGCCTT[C/T]TTAGTATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAGGCAAGCCTT</left_flank>
        <right_flank>TTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAAGAATCTATTTCGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACATGACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAACACAACTTTTTAGATGTTGTATAGTGGGATCTGTGTTTAGTGGCCTATATTTTCAGCTCTGTAGAGTTCGGTCAGTACCAGCACTACCATAACCTGGTAAAAACGGTGGTGGCCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGATTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGGAAAAAAGCGAAATCGCATGTGCCAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAGGCAAGCCTTTTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAAGAATCTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTATATAGCCTAGATTCCAGAAAACTCAGCTTCCCCTTGGACCAAAGACCTCGATGTTCCTCTTCCAATTCTCCATCGTTTCTCTTCACTTTTCTTTACTGCTTTGCTATCATCTGACAATCAGTGTCGCGGGGCACATACAGAGTGAGACCCCAACACCATACATGTACACACAAACGCCGCCTTATCAATCAATCTGCATAACTAGATCACTCCCCCTCTCTCCCTTCTCTTTCGATACAGCGGTCTTTCTTCCTCCTCCTGCTTGTGCTGCCTACCAACTAACCAAACGATAATGGCCTTTTTTTCTGTATTGAAGTTTTTCACGTTTTTTTTCTGGAAGTTTTGACACTGGACCATCAGCGATTTGCAGGATTTTTTCTAATTGTAAGGCTTGGAGGCCTTCGGTATTGGTT</canonical>
            <polymorphic>AAACATGACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAACACAACTTTTTAGATGTTGTATAGTGGGATCTGTGTTTAGTGGCCTATATTTTCAGCTCTGTAGAGTTCGGTCAGTACCAGCACTACCATAACCTGGTAAAAACGGTGGTGGCCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGATTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGGAAAAAAGCGAAATCGCATGTGCCAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAGGCAAGCCTTYTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAAGAATCTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTATATAGCCTAGATTCCAGAAAACTCAGCTTCCCCTTGGACCAAAGACCTCGATGTTCCTCTTCCAATTCTCCATCGTTTCTCTTCACTTTTCTTTACTGCTTTGCTATCATCTGACAATCAGTGTCGCGGGGCACATACAGAGTGAGACCCCAACACCATACATGTACACACAAACGCCGCCTTATCAATCAATCTGCATAACTAGATCACTCCCCCTCTCTCCCTTCTCTTTCGATACAGCGGTCTTTCTTCCTCCTCCTGCTTGTGCTGCCTACCAACTAACCAAACGATAATGGCCTTTTTTTCTGTATTGAAGTTTTTCACGTTTTTTTTCTGGAAGTTTTGACACTGGACCATCAGCGATTTGCAGGATTTTTTCTAATTGTAAGGCTTGGAGGCCTTCGGTATTGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAGGACCTCGTAGTAAGAAC</pcr_primer_p1>
		<pcr_primer_p2>GAGTTTTCTGGAATCTAGGCTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAGGCAAGCCTTTTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAAGAATCTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTATATAGCCTAGATTCCAGAAAACTC</canonical_amplicon>
		<polymorphic_amplicon>CAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAGGCAAGCCTTYTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAAGAATCTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTATATAGCCTAGATTCCAGAAAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4378</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>312806</contig_pos>
        <strand>+</strand>
        <context>CACCATACAT[A/G]TACACACAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAATCAGTGTCGCGGGGCACATACAGAGTGAGACCCCAACACCATACAT</left_flank>
        <right_flank>TACACACAAACGCCGCCTTATCAATCAATCTGCATAACTAGATCACTCCC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTCAGGCCAACTTCCCCTGACCAAGATTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGGAAAAAAGCGAAATCGCATGTGCCAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAGGCAAGCCTTTTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAAGAATCTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTATATAGCCTAGATTCCAGAAAACTCAGCTTCCCCTTGGACCAAAGACCTCGATGTTCCTCTTCCAATTCTCCATCGTTTCTCTTCACTTTTCTTTACTGCTTTGCTATCATCTGACAATCAGTGTCGCGGGGCACATACAGAGTGAGACCCCAACACCATACATGTACACACAAACGCCGCCTTATCAATCAATCTGCATAACTAGATCACTCCCCCTCTCTCCCTTCTCTTTCGATACAGCGGTCTTTCTTCCTCCTCCTGCTTGTGCTGCCTACCAACTAACCAAACGATAATGGCCTTTTTTTCTGTATTGAAGTTTTTCACGTTTTTTTTCTGGAAGTTTTGACACTGGACCATCAGCGATTTGCAGGATTTTTTCTAATTGTAAGGCTTGGAGGCCTTCGGTATTGGTTTCTGGCAGAGCTCTTGAAAACTAAAAAATTTAGTAAATTTCAAATTCAACATTTTGTCAGTTTTTTTTTTCGAGATGGCTTCTTGAAGCTAGGACGCTAATTGTAAGAAACTAGACCTTCTTGTAACTGCTTCTCTCGGTCCTCTCTCGAAGAACCCCAACTGTTACCGTATACCTTGCCAACCATCAATCCACGTCATTCTTTTCTTTTCTCTGTTTTAGTACCCAACAGCATAGTTTTATGTACCAGTT</canonical>
            <polymorphic>AAATTCAGGCCAACTTCCCCTGACCAAGATTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGGAAAAAAGCGAAATCGCATGTGCCAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAGGCAAGCCTTTTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAAGAATCTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTATATAGCCTAGATTCCAGAAAACTCAGCTTCCCCTTGGACCAAAGACCTCGATGTTCCTCTTCCAATTCTCCATCGTTTCTCTTCACTTTTCTTTACTGCTTTGCTATCATCTGACAATCAGTGTCGCGGGGCACATACAGAGTGAGACCCCAACACCATACATRTACACACAAACGCCGCCTTATCAATCAATCTGCATAACTAGATCACTCCCCCTCTCTCCCTTCTCTTTCGATACAGCGGTCTTTCTTCCTCCTCCTGCTTGTGCTGCCTACCAACTAACCAAACGATAATGGCCTTTTTTTCTGTATTGAAGTTTTTCACGTTTTTTTTCTGGAAGTTTTGACACTGGACCATCAGCGATTTGCAGGATTTTTTCTAATTGTAAGGCTTGGAGGCCTTCGGTATTGGTTTCTGGCAGAGCTCTTGAAAACTAAAAAATTTAGTAAATTTCAAATTCAACATTTTGTCAGTTTTTTTTTTCGAGATGGCTTCTTGAAGCTAGGACGCTAATTGTAAGAAACTAGACCTTCTTGTAACTGCTTCTCTCGGTCCTCTCTCGAAGAACCCCAACTGTTACCGTATACCTTGCCAACCATCAATCCACGTCATTCTTTTCTTTTCTCTGTTTTAGTACCCAACAGCATAGTTTTATGTACCAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGTACA</site>
                <isoschizomers>
                    <enzyme>AauI</enzyme>
                    <enzyme>Bsp1407I</enzyme>
                    <enzyme>BsrGI</enzyme>
                    <enzyme>SspBI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>470 308 193 22 7</canonical_bands>
                <polymorphic_bands>663 308 22 7</polymorphic_bands>
            </assay>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>500 393 107</canonical_bands>
                <polymorphic_bands>893 107</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 393 104</canonical_bands>
                <polymorphic_bands>896 104</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>450 418 80 52</canonical_bands>
                <polymorphic_bands>868 80 52</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCACTTTTCTTTACTGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAAACGTGAAAAACTTCAATACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTCACTTTTCTTTACTGCTTTGCTATCATCTGACAATCAGTGTCGCGGGGCACATACAGAGTGAGACCCCAACACCATACATGTACACACAAACGCCGCCTTATCAATCAATCTGCATAACTAGATCACTCCCCCTCTCTCCCTTCTCTTTCGATACAGCGGTCTTTCTTCCTCCTCCTGCTTGTGCTGCCTACCAACTAACCAAACGATAATGGCCTTTTTTTCTGTATTGAAGTTTTTCACGTTTT</canonical_amplicon>
		<polymorphic_amplicon>CTTCACTTTTCTTTACTGCTTTGCTATCATCTGACAATCAGTGTCGCGGGGCACATACAGAGTGAGACCCCAACACCATACATRTACACACAAACGCCGCCTTATCAATCAATCTGCATAACTAGATCACTCCCCCTCTCTCCCTTCTCTTTCGATACAGCGGTCTTTCTTCCTCCTCCTGCTTGTGCTGCCTACCAACTAACCAAACGATAATGGCCTTTTTTTCTGTATTGAAGTTTTTCACGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4379</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>313053</contig_pos>
        <strand>+</strand>
        <context>TTCGGTATTG[A/G]TTTCTGGCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGATTTGCAGGATTTTTTCTAATTGTAAGGCTTGGAGGCCTTCGGTATTG</left_flank>
        <right_flank>TTTCTGGCAGAGCTCTTGAAAACTAAAAAATTTAGTAAATTTCAAATTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAAGAATCTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTATATAGCCTAGATTCCAGAAAACTCAGCTTCCCCTTGGACCAAAGACCTCGATGTTCCTCTTCCAATTCTCCATCGTTTCTCTTCACTTTTCTTTACTGCTTTGCTATCATCTGACAATCAGTGTCGCGGGGCACATACAGAGTGAGACCCCAACACCATACATGTACACACAAACGCCGCCTTATCAATCAATCTGCATAACTAGATCACTCCCCCTCTCTCCCTTCTCTTTCGATACAGCGGTCTTTCTTCCTCCTCCTGCTTGTGCTGCCTACCAACTAACCAAACGATAATGGCCTTTTTTTCTGTATTGAAGTTTTTCACGTTTTTTTTCTGGAAGTTTTGACACTGGACCATCAGCGATTTGCAGGATTTTTTCTAATTGTAAGGCTTGGAGGCCTTCGGTATTGGTTTCTGGCAGAGCTCTTGAAAACTAAAAAATTTAGTAAATTTCAAATTCAACATTTTGTCAGTTTTTTTTTTCGAGATGGCTTCTTGAAGCTAGGACGCTAATTGTAAGAAACTAGACCTTCTTGTAACTGCTTCTCTCGGTCCTCTCTCGAAGAACCCCAACTGTTACCGTATACCTTGCCAACCATCAATCCACGTCATTCTTTTCTTTTCTCTGTTTTAGTACCCAACAGCATAGTTTTATGTACCAGTTATATAACCGACCGGAAACTCTATGCAATGTTTCATTGGCTTTTCCGTTTCCGCTTGTTCGATGGCTTTTTTTGGTTGGCTATTATTTTGCAAAATCACAGAGATATGAAATATGTTGGATTTTGAAATTTCTAGATTCTCTGAGATTCTGAAATTTAGGATTCTGAAATTCAAGATTTTGAGCTACTCACCATATTTTTGTATACCCAAAAAATACCAAAAATCTTGTTGTACCTGTTCTTCCTATT</canonical>
            <polymorphic>TTTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAAGAATCTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTATATAGCCTAGATTCCAGAAAACTCAGCTTCCCCTTGGACCAAAGACCTCGATGTTCCTCTTCCAATTCTCCATCGTTTCTCTTCACTTTTCTTTACTGCTTTGCTATCATCTGACAATCAGTGTCGCGGGGCACATACAGAGTGAGACCCCAACACCATACATGTACACACAAACGCCGCCTTATCAATCAATCTGCATAACTAGATCACTCCCCCTCTCTCCCTTCTCTTTCGATACAGCGGTCTTTCTTCCTCCTCCTGCTTGTGCTGCCTACCAACTAACCAAACGATAATGGCCTTTTTTTCTGTATTGAAGTTTTTCACGTTTTTTTTCTGGAAGTTTTGACACTGGACCATCAGCGATTTGCAGGATTTTTTCTAATTGTAAGGCTTGGAGGCCTTCGGTATTGRTTTCTGGCAGAGCTCTTGAAAACTAAAAAATTTAGTAAATTTCAAATTCAACATTTTGTCAGTTTTTTTTTTCGAGATGGCTTCTTGAAGCTAGGACGCTAATTGTAAGAAACTAGACCTTCTTGTAACTGCTTCTCTCGGTCCTCTCTCGAAGAACCCCAACTGTTACCGTATACCTTGCCAACCATCAATCCACGTCATTCTTTTCTTTTCTCTGTTTTAGTACCCAACAGCATAGTTTTATGTACCAGTTATATAACCGACCGGAAACTCTATGCAATGTTTCATTGGCTTTTCCGTTTCCGCTTGTTCGATGGCTTTTTTTGGTTGGCTATTATTTTGCAAAATCACAGAGATATGAAATATGTTGGATTTTGAAATTTCTAGATTCTCTGAGATTCTGAAATTTAGGATTCTGAAATTCAAGATTTTGAGCTACTCACCATATTTTTGTATACCCAAAAAATACCAAAAATCTTGTTGTACCTGTTCTTCCTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACCAACTAACCAAACGATAATG</pcr_primer_p1>
		<pcr_primer_p2>TTCTTACAATTAGCGTCCTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACCAACTAACCAAACGATAATGGCCTTTTTTTCTGTATTGAAGTTTTTCACGTTTTTTTTCTGGAAGTTTTGACACTGGACCATCAGCGATTTGCAGGATTTTTTCTAATTGTAAGGCTTGGAGGCCTTCGGTATTGGTTTCTGGCAGAGCTCTTGAAAACTAAAAAATTTAGTAAATTTCAAATTCAACATTTTGTCAGTTTTTTTTTTCGAGATGGCTTCTTGAAGCTAGGACGCTAATTGTAAGAA</canonical_amplicon>
		<polymorphic_amplicon>TACCAACTAACCAAACGATAATGGCCTTTTTTTCTGTATTGAAGTTTTTCACGTTTTTTTTCTGGAAGTTTTGACACTGGACCATCAGCGATTTGCAGGATTTTTTCTAATTGTAAGGCTTGGAGGCCTTCGGTATTGRTTTCTGGCAGAGCTCTTGAAAACTAAAAAATTTAGTAAATTTCAAATTCAACATTTTGTCAGTTTTTTTTTTCGAGATGGCTTCTTGAAGCTAGGACGCTAATTGTAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4380</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>313095</contig_pos>
        <strand>+</strand>
        <context>TTAGTAAATT[C/T]CAAATTCAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGTATTGGTTTCTGGCAGAGCTCTTGAAAACTAAAAAATTTAGTAAATT</left_flank>
        <right_flank>CAAATTCAACATTTTGTCAGTTTTTTTTTTCGAGATGGCTTCTTGAAGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTATATAGCCTAGATTCCAGAAAACTCAGCTTCCCCTTGGACCAAAGACCTCGATGTTCCTCTTCCAATTCTCCATCGTTTCTCTTCACTTTTCTTTACTGCTTTGCTATCATCTGACAATCAGTGTCGCGGGGCACATACAGAGTGAGACCCCAACACCATACATGTACACACAAACGCCGCCTTATCAATCAATCTGCATAACTAGATCACTCCCCCTCTCTCCCTTCTCTTTCGATACAGCGGTCTTTCTTCCTCCTCCTGCTTGTGCTGCCTACCAACTAACCAAACGATAATGGCCTTTTTTTCTGTATTGAAGTTTTTCACGTTTTTTTTCTGGAAGTTTTGACACTGGACCATCAGCGATTTGCAGGATTTTTTCTAATTGTAAGGCTTGGAGGCCTTCGGTATTGGTTTCTGGCAGAGCTCTTGAAAACTAAAAAATTTAGTAAATTTCAAATTCAACATTTTGTCAGTTTTTTTTTTCGAGATGGCTTCTTGAAGCTAGGACGCTAATTGTAAGAAACTAGACCTTCTTGTAACTGCTTCTCTCGGTCCTCTCTCGAAGAACCCCAACTGTTACCGTATACCTTGCCAACCATCAATCCACGTCATTCTTTTCTTTTCTCTGTTTTAGTACCCAACAGCATAGTTTTATGTACCAGTTATATAACCGACCGGAAACTCTATGCAATGTTTCATTGGCTTTTCCGTTTCCGCTTGTTCGATGGCTTTTTTTGGTTGGCTATTATTTTGCAAAATCACAGAGATATGAAATATGTTGGATTTTGAAATTTCTAGATTCTCTGAGATTCTGAAATTTAGGATTCTGAAATTCAAGATTTTGAGCTACTCACCATATTTTTGTATACCCAAAAAATACCAAAAATCTTGTTGTACCTGTTCTTCCTATTGACATTTTGGCTTTTTGTCTTCCCCTACCTCCCAAAAAATTT</canonical>
            <polymorphic>CTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTATATAGCCTAGATTCCAGAAAACTCAGCTTCCCCTTGGACCAAAGACCTCGATGTTCCTCTTCCAATTCTCCATCGTTTCTCTTCACTTTTCTTTACTGCTTTGCTATCATCTGACAATCAGTGTCGCGGGGCACATACAGAGTGAGACCCCAACACCATACATGTACACACAAACGCCGCCTTATCAATCAATCTGCATAACTAGATCACTCCCCCTCTCTCCCTTCTCTTTCGATACAGCGGTCTTTCTTCCTCCTCCTGCTTGTGCTGCCTACCAACTAACCAAACGATAATGGCCTTTTTTTCTGTATTGAAGTTTTTCACGTTTTTTTTCTGGAAGTTTTGACACTGGACCATCAGCGATTTGCAGGATTTTTTCTAATTGTAAGGCTTGGAGGCCTTCGGTATTGGTTTCTGGCAGAGCTCTTGAAAACTAAAAAATTTAGTAAATTYCAAATTCAACATTTTGTCAGTTTTTTTTTTCGAGATGGCTTCTTGAAGCTAGGACGCTAATTGTAAGAAACTAGACCTTCTTGTAACTGCTTCTCTCGGTCCTCTCTCGAAGAACCCCAACTGTTACCGTATACCTTGCCAACCATCAATCCACGTCATTCTTTTCTTTTCTCTGTTTTAGTACCCAACAGCATAGTTTTATGTACCAGTTATATAACCGACCGGAAACTCTATGCAATGTTTCATTGGCTTTTCCGTTTCCGCTTGTTCGATGGCTTTTTTTGGTTGGCTATTATTTTGCAAAATCACAGAGATATGAAATATGTTGGATTTTGAAATTTCTAGATTCTCTGAGATTCTGAAATTTAGGATTCTGAAATTCAAGATTTTGAGCTACTCACCATATTTTTGTATACCCAAAAAATACCAAAAATCTTGTTGTACCTGTTCTTCCTATTGACATTTTGGCTTTTTGTCTTCCCCTACCTCCCAAAAAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>486 334 118 26 15 9 7 5</canonical_bands>
                <polymorphic_bands>486 334 118 26 16 15 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACCAACTAACCAAACGATAATG</pcr_primer_p1>
		<pcr_primer_p2>TTCTTACAATTAGCGTCCTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACCAACTAACCAAACGATAATGGCCTTTTTTTCTGTATTGAAGTTTTTCACGTTTTTTTTCTGGAAGTTTTGACACTGGACCATCAGCGATTTGCAGGATTTTTTCTAATTGTAAGGCTTGGAGGCCTTCGGTATTGGTTTCTGGCAGAGCTCTTGAAAACTAAAAAATTTAGTAAATTTCAAATTCAACATTTTGTCAGTTTTTTTTTTCGAGATGGCTTCTTGAAGCTAGGACGCTAATTGTAAGAA</canonical_amplicon>
		<polymorphic_amplicon>TACCAACTAACCAAACGATAATGGCCTTTTTTTCTGTATTGAAGTTTTTCACGTTTTTTTTCTGGAAGTTTTGACACTGGACCATCAGCGATTTGCAGGATTTTTTCTAATTGTAAGGCTTGGAGGCCTTCGGTATTGGTTTCTGGCAGAGCTCTTGAAAACTAAAAAATTTAGTAAATTYCAAATTCAACATTTTGTCAGTTTTTTTTTTCGAGATGGCTTCTTGAAGCTAGGACGCTAATTGTAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4381</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>313211</contig_pos>
        <strand>+</strand>
        <context>CTCGAAGAAC[C/T]CCAACTGTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAACTAGACCTTCTTGTAACTGCTTCTCTCGGTCCTCTCTCGAAGAAC</left_flank>
        <right_flank>CCAACTGTTACCGTATACCTTGCCAACCATCAATCCACGTCATTCTTTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATCGTTTCTCTTCACTTTTCTTTACTGCTTTGCTATCATCTGACAATCAGTGTCGCGGGGCACATACAGAGTGAGACCCCAACACCATACATGTACACACAAACGCCGCCTTATCAATCAATCTGCATAACTAGATCACTCCCCCTCTCTCCCTTCTCTTTCGATACAGCGGTCTTTCTTCCTCCTCCTGCTTGTGCTGCCTACCAACTAACCAAACGATAATGGCCTTTTTTTCTGTATTGAAGTTTTTCACGTTTTTTTTCTGGAAGTTTTGACACTGGACCATCAGCGATTTGCAGGATTTTTTCTAATTGTAAGGCTTGGAGGCCTTCGGTATTGGTTTCTGGCAGAGCTCTTGAAAACTAAAAAATTTAGTAAATTTCAAATTCAACATTTTGTCAGTTTTTTTTTTCGAGATGGCTTCTTGAAGCTAGGACGCTAATTGTAAGAAACTAGACCTTCTTGTAACTGCTTCTCTCGGTCCTCTCTCGAAGAACCCCAACTGTTACCGTATACCTTGCCAACCATCAATCCACGTCATTCTTTTCTTTTCTCTGTTTTAGTACCCAACAGCATAGTTTTATGTACCAGTTATATAACCGACCGGAAACTCTATGCAATGTTTCATTGGCTTTTCCGTTTCCGCTTGTTCGATGGCTTTTTTTGGTTGGCTATTATTTTGCAAAATCACAGAGATATGAAATATGTTGGATTTTGAAATTTCTAGATTCTCTGAGATTCTGAAATTTAGGATTCTGAAATTCAAGATTTTGAGCTACTCACCATATTTTTGTATACCCAAAAAATACCAAAAATCTTGTTGTACCTGTTCTTCCTATTGACATTTTGGCTTTTTGTCTTCCCCTACCTCCCAAAAAATTTCCCTCTGTTCTTCTTCTTTTCCTCCTTATTTTTATTGGGCTCCTTTGCGAATTTCCCCTATTTCCTTTTTCGAAGAAAAAAAACCTTCTGCATTTTATTTCAACTCGGTTTTTAAT</canonical>
            <polymorphic>CCATCGTTTCTCTTCACTTTTCTTTACTGCTTTGCTATCATCTGACAATCAGTGTCGCGGGGCACATACAGAGTGAGACCCCAACACCATACATGTACACACAAACGCCGCCTTATCAATCAATCTGCATAACTAGATCACTCCCCCTCTCTCCCTTCTCTTTCGATACAGCGGTCTTTCTTCCTCCTCCTGCTTGTGCTGCCTACCAACTAACCAAACGATAATGGCCTTTTTTTCTGTATTGAAGTTTTTCACGTTTTTTTTCTGGAAGTTTTGACACTGGACCATCAGCGATTTGCAGGATTTTTTCTAATTGTAAGGCTTGGAGGCCTTCGGTATTGGTTTCTGGCAGAGCTCTTGAAAACTAAAAAATTTAGTAAATTTCAAATTCAACATTTTGTCAGTTTTTTTTTTCGAGATGGCTTCTTGAAGCTAGGACGCTAATTGTAAGAAACTAGACCTTCTTGTAACTGCTTCTCTCGGTCCTCTCTCGAAGAACYCCAACTGTTACCGTATACCTTGCCAACCATCAATCCACGTCATTCTTTTCTTTTCTCTGTTTTAGTACCCAACAGCATAGTTTTATGTACCAGTTATATAACCGACCGGAAACTCTATGCAATGTTTCATTGGCTTTTCCGTTTCCGCTTGTTCGATGGCTTTTTTTGGTTGGCTATTATTTTGCAAAATCACAGAGATATGAAATATGTTGGATTTTGAAATTTCTAGATTCTCTGAGATTCTGAAATTTAGGATTCTGAAATTCAAGATTTTGAGCTACTCACCATATTTTTGTATACCCAAAAAATACCAAAAATCTTGTTGTACCTGTTCTTCCTATTGACATTTTGGCTTTTTGTCTTCCCCTACCTCCCAAAAAATTTCCCTCTGTTCTTCTTCTTTTCCTCCTTATTTTTATTGGGCTCCTTTGCGAATTTCCCCTATTTCCTTTTTCGAAGAAAAAAAACCTTCTGCATTTTATTTCAACTCGGTTTTTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGACGCTAATTGTAAGAAACTA</pcr_primer_p1>
		<pcr_primer_p2>CAAAATAATAGCCAACCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGACGCTAATTGTAAGAAACTAGACCTTCTTGTAACTGCTTCTCTCGGTCCTCTCTCGAAGAACCCCAACTGTTACCGTATACCTTGCCAACCATCAATCCACGTCATTCTTTTCTTTTCTCTGTTTTAGTACCCAACAGCATAGTTTTATGTACCAGTTATATAACCGACCGGAAACTCTATGCAATGTTTCATTGGCTTTTCCGTTTCCGCTTGTTCGATGGCTTTTTTTGGTTGGCTATTATTTTG</canonical_amplicon>
		<polymorphic_amplicon>AGGACGCTAATTGTAAGAAACTAGACCTTCTTGTAACTGCTTCTCTCGGTCCTCTCTCGAAGAACYCCAACTGTTACCGTATACCTTGCCAACCATCAATCCACGTCATTCTTTTCTTTTCTCTGTTTTAGTACCCAACAGCATAGTTTTATGTACCAGTTATATAACCGACCGGAAACTCTATGCAATGTTTCATTGGCTTTTCCGTTTCCGCTTGTTCGATGGCTTTTTTTGGTTGGCTATTATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4382</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>313223</contig_pos>
        <strand>+</strand>
        <context>CAACTGTTAC[C/T]GTATACCTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTTGTAACTGCTTCTCTCGGTCCTCTCTCGAAGAACCCCAACTGTTAC</left_flank>
        <right_flank>GTATACCTTGCCAACCATCAATCCACGTCATTCTTTTCTTTTCTCTGTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCACTTTTCTTTACTGCTTTGCTATCATCTGACAATCAGTGTCGCGGGGCACATACAGAGTGAGACCCCAACACCATACATGTACACACAAACGCCGCCTTATCAATCAATCTGCATAACTAGATCACTCCCCCTCTCTCCCTTCTCTTTCGATACAGCGGTCTTTCTTCCTCCTCCTGCTTGTGCTGCCTACCAACTAACCAAACGATAATGGCCTTTTTTTCTGTATTGAAGTTTTTCACGTTTTTTTTCTGGAAGTTTTGACACTGGACCATCAGCGATTTGCAGGATTTTTTCTAATTGTAAGGCTTGGAGGCCTTCGGTATTGGTTTCTGGCAGAGCTCTTGAAAACTAAAAAATTTAGTAAATTTCAAATTCAACATTTTGTCAGTTTTTTTTTTCGAGATGGCTTCTTGAAGCTAGGACGCTAATTGTAAGAAACTAGACCTTCTTGTAACTGCTTCTCTCGGTCCTCTCTCGAAGAACCCCAACTGTTACCGTATACCTTGCCAACCATCAATCCACGTCATTCTTTTCTTTTCTCTGTTTTAGTACCCAACAGCATAGTTTTATGTACCAGTTATATAACCGACCGGAAACTCTATGCAATGTTTCATTGGCTTTTCCGTTTCCGCTTGTTCGATGGCTTTTTTTGGTTGGCTATTATTTTGCAAAATCACAGAGATATGAAATATGTTGGATTTTGAAATTTCTAGATTCTCTGAGATTCTGAAATTTAGGATTCTGAAATTCAAGATTTTGAGCTACTCACCATATTTTTGTATACCCAAAAAATACCAAAAATCTTGTTGTACCTGTTCTTCCTATTGACATTTTGGCTTTTTGTCTTCCCCTACCTCCCAAAAAATTTCCCTCTGTTCTTCTTCTTTTCCTCCTTATTTTTATTGGGCTCCTTTGCGAATTTCCCCTATTTCCTTTTTCGAAGAAAAAAAACCTTCTGCATTTTATTTCAACTCGGTTTTTAATCGAAAATGACAT</canonical>
            <polymorphic>TTCACTTTTCTTTACTGCTTTGCTATCATCTGACAATCAGTGTCGCGGGGCACATACAGAGTGAGACCCCAACACCATACATGTACACACAAACGCCGCCTTATCAATCAATCTGCATAACTAGATCACTCCCCCTCTCTCCCTTCTCTTTCGATACAGCGGTCTTTCTTCCTCCTCCTGCTTGTGCTGCCTACCAACTAACCAAACGATAATGGCCTTTTTTTCTGTATTGAAGTTTTTCACGTTTTTTTTCTGGAAGTTTTGACACTGGACCATCAGCGATTTGCAGGATTTTTTCTAATTGTAAGGCTTGGAGGCCTTCGGTATTGGTTTCTGGCAGAGCTCTTGAAAACTAAAAAATTTAGTAAATTTCAAATTCAACATTTTGTCAGTTTTTTTTTTCGAGATGGCTTCTTGAAGCTAGGACGCTAATTGTAAGAAACTAGACCTTCTTGTAACTGCTTCTCTCGGTCCTCTCTCGAAGAACCCCAACTGTTACYGTATACCTTGCCAACCATCAATCCACGTCATTCTTTTCTTTTCTCTGTTTTAGTACCCAACAGCATAGTTTTATGTACCAGTTATATAACCGACCGGAAACTCTATGCAATGTTTCATTGGCTTTTCCGTTTCCGCTTGTTCGATGGCTTTTTTTGGTTGGCTATTATTTTGCAAAATCACAGAGATATGAAATATGTTGGATTTTGAAATTTCTAGATTCTCTGAGATTCTGAAATTTAGGATTCTGAAATTCAAGATTTTGAGCTACTCACCATATTTTTGTATACCCAAAAAATACCAAAAATCTTGTTGTACCTGTTCTTCCTATTGACATTTTGGCTTTTTGTCTTCCCCTACCTCCCAAAAAATTTCCCTCTGTTCTTCTTCTTTTCCTCCTTATTTTTATTGGGCTCCTTTGCGAATTTCCCCTATTTCCTTTTTCGAAGAAAAAAAACCTTCTGCATTTTATTTCAACTCGGTTTTTAATCGAAAATGACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGACGCTAATTGTAAGAAACTA</pcr_primer_p1>
		<pcr_primer_p2>CAAAATAATAGCCAACCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGACGCTAATTGTAAGAAACTAGACCTTCTTGTAACTGCTTCTCTCGGTCCTCTCTCGAAGAACCCCAACTGTTACCGTATACCTTGCCAACCATCAATCCACGTCATTCTTTTCTTTTCTCTGTTTTAGTACCCAACAGCATAGTTTTATGTACCAGTTATATAACCGACCGGAAACTCTATGCAATGTTTCATTGGCTTTTCCGTTTCCGCTTGTTCGATGGCTTTTTTTGGTTGGCTATTATTTTG</canonical_amplicon>
		<polymorphic_amplicon>AGGACGCTAATTGTAAGAAACTAGACCTTCTTGTAACTGCTTCTCTCGGTCCTCTCTCGAAGAACCCCAACTGTTACYGTATACCTTGCCAACCATCAATCCACGTCATTCTTTTCTTTTCTCTGTTTTAGTACCCAACAGCATAGTTTTATGTACCAGTTATATAACCGACCGGAAACTCTATGCAATGTTTCATTGGCTTTTCCGTTTCCGCTTGTTCGATGGCTTTTTTTGGTTGGCTATTATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4383</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>314424</contig_pos>
        <strand>+</strand>
        <context>GAAACCTTYG[A/T]AAATGTGTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTG</left_flank>
        <right_flank>AAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATCAATTTTTTTTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCATCCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGCTGATAAAATACTTTTTATTTTATAATAAACATTTTTCCGTTGACCACTTTTTGCTATCTTTTACATGAACCGAGATATATGAACTCAAAGTTAACGCCTCTATTCTTGTACTTCGAGCTCAATTATCTCGCTTCAAGCT</canonical>
            <polymorphic>AAAATCAATTTTTTTTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGWAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCATCCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGCTGATAAAATACTTTTTATTTTATAATAAACATTTTTCCGTTGACCACTTTTTGCTATCTTTTACATGAACCGAGATATATGAACTCAAAGTTAACGCCTCTATTCTTGTACTTCGAGCTCAATTATCTCGCTTCAAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCCACACAATCTCTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>CAGAAGTGATCCTAGCTAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTG</canonical_amplicon>
		<polymorphic_amplicon>AAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGWAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4384</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>314422</contig_pos>
        <strand>+</strand>
        <context>TTGAAACCTT[C/T]GWAAATGTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTT</left_flank>
        <right_flank>GAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAATCAATTTTTTTTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCATCCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGCTGATAAAATACTTTTTATTTTATAATAAACATTTTTCCGTTGACCACTTTTTGCTATCTTTTACATGAACCGAGATATATGAACTCAAAGTTAACGCCTCTATTCTTGTACTTCGAGCTCAATTATCTCGCTTCAAG</canonical>
            <polymorphic>AAAAAATCAATTTTTTTTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTYGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCATCCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGCTGATAAAATACTTTTTATTTTATAATAAACATTTTTCCGTTGACCACTTTTTGCTATCTTTTACATGAACCGAGATATATGAACTCAAAGTTAACGCCTCTATTCTTGTACTTCGAGCTCAATTATCTCGCTTCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCCACACAATCTCTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>CAGAAGTGATCCTAGCTAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTG</canonical_amplicon>
		<polymorphic_amplicon>AAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTYGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4385</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>314285</contig_pos>
        <strand>+</strand>
        <context>TTCTGTTCTA[C/T]ATTTTTCCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTA</left_flank>
        <right_flank>ATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGAT</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGCTAAAAAGCTTTTAGTTAGGGAAAAATGTTTTTGGTGTTTTGCATGATGTGAGAGTTTATTTTTTGCAGTATAAAACACTTGTATAGTTTGGTTCGAAGGAATTTTAGGAATATCAAAAGTTTATTTTCTTGAAAAAAATCAATTTTTTTTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCATCCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGC</canonical>
            <polymorphic>GGTGCTAAAAAGCTTTTAGTTAGGGAAAAATGTTTTTGGTGTTTTGCATGATGTGAGAGTTTATTTTTTGCAGTATAAAACACTTGTATAGTTTGGTTCGAAGGAATTTTAGGAATATCAAAAGTTTATTTTCTTGAAAAAAATCAATTTTTTTTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTAYATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCATCCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGTAGTCTATAAACTTTCCTGAG</pcr_primer_p1>
		<pcr_primer_p2>GTCTAAAAATTCCGAGACGAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGAC</canonical_amplicon>
		<polymorphic_amplicon>TTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTAYATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4412</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>314110</contig_pos>
        <strand></strand>
        <context>agaaacaaga[C/T]gctctctttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGA</left_flank>
        <right_flank>GCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTCCTCCTTATTTTTATTGGGCTCCTTTGCGAATTTCCCCTATTTCCTTTTTCGAAGAAAAAAAACCTTCTGCATTTTATTTCAACTCGGTTTTTAATCGAAAATGACATGATAATTAGTGCACACACACACACACACACACACAAACAAACACAAATTACACATAATTATAGGTGCTAAAAAGCTTTTAGTTAGGGAAAAATGTTTTTGGTGTTTTGCATGATGTGAGAGTTTATTTTTTGCAGTATAAAACACTTGTATAGTTTGGTTCGAAGGAATTTTAGGAATATCAAAAGTTTATTTTCTTGAAAAAAATCAATTTTTTTTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGA</canonical>
            <polymorphic>CTTTTCCTCCTTATTTTTATTGGGCTCCTTTGCGAATTTCCCCTATTTCCTTTTTCGAAGAAAAAAAACCTTCTGCATTTTATTTCAACTCGGTTTTTAATCGAAAATGACATGATAATTAGTGCACACACACACACACACACACACAAACAAACACAAATTACACATAATTATAGGTGCTAAAAAGCTTTTAGTTAGGGAAAAATGTTTTTGGTGTTTTGCATGATGTGAGAGTTTATTTTTTGCAGTATAAAACACTTGTATAGTTTGGTTCGAAGGAATTTTAGGAATATCAAAAGTTTATTTTCTTGAAAAAAATCAATTTTTTTTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGAYGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAAAGTCCTTTATCTCACTTC</pcr_primer_p1>
		<pcr_primer_p2>AAGTATTAGATGCTCAGGAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTT</canonical_amplicon>
		<polymorphic_amplicon>TTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGAYGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4431</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>314089</contig_pos>
        <strand>+</strand>
        <context>GTGTRCTTCG[C/T]CAagacggaa</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCG</left_flank>
        <right_flank>CAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTCCCTCTGTTCTTCTTCTTTTCCTCCTTATTTTTATTGGGCTCCTTTGCGAATTTCCCCTATTTCCTTTTTCGAAGAAAAAAAACCTTCTGCATTTTATTTCAACTCGGTTTTTAATCGAAAATGACATGATAATTAGTGCACACACACACACACACACACACAAACAAACACAAATTACACATAATTATAGGTGCTAAAAAGCTTTTAGTTAGGGAAAAATGTTTTTGGTGTTTTGCATGATGTGAGAGTTTATTTTTTGCAGTATAAAACACTTGTATAGTTTGGTTCGAAGGAATTTTAGGAATATCAAAAGTTTATTTTCTTGAAAAAAATCAATTTTTTTTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCA</canonical>
            <polymorphic>AAATTTCCCTCTGTTCTTCTTCTTTTCCTCCTTATTTTTATTGGGCTCCTTTGCGAATTTCCCCTATTTCCTTTTTCGAAGAAAAAAAACCTTCTGCATTTTATTTCAACTCGGTTTTTAATCGAAAATGACATGATAATTAGTGCACACACACACACACACACACACAAACAAACACAAATTACACATAATTATAGGTGCTAAAAAGCTTTTAGTTAGGGAAAAATGTTTTTGGTGTTTTGCATGATGTGAGAGTTTATTTTTTGCAGTATAAAACACTTGTATAGTTTGGTTCGAAGGAATTTTAGGAATATCAAAAGTTTATTTTCTTGAAAAAAATCAATTTTTTTTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGYCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>329 326 129 81 54 43 38</canonical_bands>
                <polymorphic_bands>329 326 210 54 43 38</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAAAGTCCTTTATCTCACTTC</pcr_primer_p1>
		<pcr_primer_p2>AAGTATTAGATGCTCAGGAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTT</canonical_amplicon>
		<polymorphic_amplicon>TTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGYCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4432</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>314083</contig_pos>
        <strand>+</strand>
        <context>TCTAAAGTGT[A/G]CTTCGYCAag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGT</left_flank>
        <right_flank>CTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCAAAAAATTTCCCTCTGTTCTTCTTCTTTTCCTCCTTATTTTTATTGGGCTCCTTTGCGAATTTCCCCTATTTCCTTTTTCGAAGAAAAAAAACCTTCTGCATTTTATTTCAACTCGGTTTTTAATCGAAAATGACATGATAATTAGTGCACACACACACACACACACACACAAACAAACACAAATTACACATAATTATAGGTGCTAAAAAGCTTTTAGTTAGGGAAAAATGTTTTTGGTGTTTTGCATGATGTGAGAGTTTATTTTTTGCAGTATAAAACACTTGTATAGTTTGGTTCGAAGGAATTTTAGGAATATCAAAAGTTTATTTTCTTGAAAAAAATCAATTTTTTTTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCC</canonical>
            <polymorphic>CCCAAAAAATTTCCCTCTGTTCTTCTTCTTTTCCTCCTTATTTTTATTGGGCTCCTTTGCGAATTTCCCCTATTTCCTTTTTCGAAGAAAAAAAACCTTCTGCATTTTATTTCAACTCGGTTTTTAATCGAAAATGACATGATAATTAGTGCACACACACACACACACACACACAAACAAACACAAATTACACATAATTATAGGTGCTAAAAAGCTTTTAGTTAGGGAAAAATGTTTTTGGTGTTTTGCATGATGTGAGAGTTTATTTTTTGCAGTATAAAACACTTGTATAGTTTGGTTCGAAGGAATTTTAGGAATATCAAAAGTTTATTTTCTTGAAAAAAATCAATTTTTTTTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTRCTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 347 151</canonical_bands>
                <polymorphic_bands>849 151</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAAAGTCCTTTATCTCACTTC</pcr_primer_p1>
		<pcr_primer_p2>AAGTATTAGATGCTCAGGAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTT</canonical_amplicon>
		<polymorphic_amplicon>TTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTRCTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4433</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>314069</contig_pos>
        <strand>+</strand>
        <context>TAGAGGTWTG[C/T]TCTTCTAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATG</left_flank>
        <right_flank>TCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTTCCCCTACCTCCCAAAAAATTTCCCTCTGTTCTTCTTCTTTTCCTCCTTATTTTTATTGGGCTCCTTTGCGAATTTCCCCTATTTCCTTTTTCGAAGAAAAAAAACCTTCTGCATTTTATTTCAACTCGGTTTTTAATCGAAAATGACATGATAATTAGTGCACACACACACACACACACACACAAACAAACACAAATTACACATAATTATAGGTGCTAAAAAGCTTTTAGTTAGGGAAAAATGTTTTTGGTGTTTTGCATGATGTGAGAGTTTATTTTTTGCAGTATAAAACACTTGTATAGTTTGGTTCGAAGGAATTTTAGGAATATCAAAAGTTTATTTTCTTGAAAAAAATCAATTTTTTTTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCC</canonical>
            <polymorphic>GTCTTCCCCTACCTCCCAAAAAATTTCCCTCTGTTCTTCTTCTTTTCCTCCTTATTTTTATTGGGCTCCTTTGCGAATTTCCCCTATTTCCTTTTTCGAAGAAAAAAAACCTTCTGCATTTTATTTCAACTCGGTTTTTAATCGAAAATGACATGATAATTAGTGCACACACACACACACACACACACAAACAAACACAAATTACACATAATTATAGGTGCTAAAAAGCTTTTAGTTAGGGAAAAATGTTTTTGGTGTTTTGCATGATGTGAGAGTTTATTTTTTGCAGTATAAAACACTTGTATAGTTTGGTTCGAAGGAATTTTAGGAATATCAAAAGTTTATTTTCTTGAAAAAAATCAATTTTTTTTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGYTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAAAGTCCTTTATCTCACTTC</pcr_primer_p1>
		<pcr_primer_p2>AAGTATTAGATGCTCAGGAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTT</canonical_amplicon>
		<polymorphic_amplicon>TTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGYTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4434</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>314066</contig_pos>
        <strand>+</strand>
        <context>TTTTAGAGGT[A/T]TGYTCTTCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGT</left_flank>
        <right_flank>TGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGTCTTCCCCTACCTCCCAAAAAATTTCCCTCTGTTCTTCTTCTTTTCCTCCTTATTTTTATTGGGCTCCTTTGCGAATTTCCCCTATTTCCTTTTTCGAAGAAAAAAAACCTTCTGCATTTTATTTCAACTCGGTTTTTAATCGAAAATGACATGATAATTAGTGCACACACACACACACACACACACAAACAAACACAAATTACACATAATTATAGGTGCTAAAAAGCTTTTAGTTAGGGAAAAATGTTTTTGGTGTTTTGCATGATGTGAGAGTTTATTTTTTGCAGTATAAAACACTTGTATAGTTTGGTTCGAAGGAATTTTAGGAATATCAAAAGTTTATTTTCTTGAAAAAAATCAATTTTTTTTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACC</canonical>
            <polymorphic>TTTGTCTTCCCCTACCTCCCAAAAAATTTCCCTCTGTTCTTCTTCTTTTCCTCCTTATTTTTATTGGGCTCCTTTGCGAATTTCCCCTATTTCCTTTTTCGAAGAAAAAAAACCTTCTGCATTTTATTTCAACTCGGTTTTTAATCGAAAATGACATGATAATTAGTGCACACACACACACACACACACACAAACAAACACAAATTACACATAATTATAGGTGCTAAAAAGCTTTTAGTTAGGGAAAAATGTTTTTGGTGTTTTGCATGATGTGAGAGTTTATTTTTTGCAGTATAAAACACTTGTATAGTTTGGTTCGAAGGAATTTTAGGAATATCAAAAGTTTATTTTCTTGAAAAAAATCAATTTTTTTTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTWTGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAAAGTCCTTTATCTCACTTC</pcr_primer_p1>
		<pcr_primer_p2>AAGTATTAGATGCTCAGGAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTT</canonical_amplicon>
		<polymorphic_amplicon>TTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTWTGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4435</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>314044</contig_pos>
        <strand>+</strand>
        <context>AAGTTGTTCA[C/T]GGGCTTCTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCA</left_flank>
        <right_flank>GGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCCTATTGACATTTTGGCTTTTTGTCTTCCCCTACCTCCCAAAAAATTTCCCTCTGTTCTTCTTCTTTTCCTCCTTATTTTTATTGGGCTCCTTTGCGAATTTCCCCTATTTCCTTTTTCGAAGAAAAAAAACCTTCTGCATTTTATTTCAACTCGGTTTTTAATCGAAAATGACATGATAATTAGTGCACACACACACACACACACACACAAACAAACACAAATTACACATAATTATAGGTGCTAAAAAGCTTTTAGTTAGGGAAAAATGTTTTTGGTGTTTTGCATGATGTGAGAGTTTATTTTTTGCAGTATAAAACACTTGTATAGTTTGGTTCGAAGGAATTTTAGGAATATCAAAAGTTTATTTTCTTGAAAAAAATCAATTTTTTTTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTT</canonical>
            <polymorphic>CTTCCTATTGACATTTTGGCTTTTTGTCTTCCCCTACCTCCCAAAAAATTTCCCTCTGTTCTTCTTCTTTTCCTCCTTATTTTTATTGGGCTCCTTTGCGAATTTCCCCTATTTCCTTTTTCGAAGAAAAAAAACCTTCTGCATTTTATTTCAACTCGGTTTTTAATCGAAAATGACATGATAATTAGTGCACACACACACACACACACACACAAACAAACACAAATTACACATAATTATAGGTGCTAAAAAGCTTTTAGTTAGGGAAAAATGTTTTTGGTGTTTTGCATGATGTGAGAGTTTATTTTTTGCAGTATAAAACACTTGTATAGTTTGGTTCGAAGGAATTTTAGGAATATCAAAAGTTTATTTTCTTGAAAAAAATCAATTTTTTTTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCAYGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 210 177 111</canonical_bands>
                <polymorphic_bands>712 177 111</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAAAGTCCTTTATCTCACTTC</pcr_primer_p1>
		<pcr_primer_p2>AAGTATTAGATGCTCAGGAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTT</canonical_amplicon>
		<polymorphic_amplicon>TTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCAYGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4436</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>313979</contig_pos>
        <strand>+</strand>
        <context>AGCTTTTAAG[A/G]AAATTTCAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAATTTTTTTTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAG</left_flank>
        <right_flank>AAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTTGAGCTACTCACCATATTTTTGTATACCCAAAAAATACCAAAAATCTTGTTGTACCTGTTCTTCCTATTGACATTTTGGCTTTTTGTCTTCCCCTACCTCCCAAAAAATTTCCCTCTGTTCTTCTTCTTTTCCTCCTTATTTTTATTGGGCTCCTTTGCGAATTTCCCCTATTTCCTTTTTCGAAGAAAAAAAACCTTCTGCATTTTATTTCAACTCGGTTTTTAATCGAAAATGACATGATAATTAGTGCACACACACACACACACACACACAAACAAACACAAATTACACATAATTATAGGTGCTAAAAAGCTTTTAGTTAGGGAAAAATGTTTTTGGTGTTTTGCATGATGTGAGAGTTTATTTTTTGCAGTATAAAACACTTGTATAGTTTGGTTCGAAGGAATTTTAGGAATATCAAAAGTTTATTTTCTTGAAAAAAATCAATTTTTTTTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTT</canonical>
            <polymorphic>GATTTTGAGCTACTCACCATATTTTTGTATACCCAAAAAATACCAAAAATCTTGTTGTACCTGTTCTTCCTATTGACATTTTGGCTTTTTGTCTTCCCCTACCTCCCAAAAAATTTCCCTCTGTTCTTCTTCTTTTCCTCCTTATTTTTATTGGGCTCCTTTGCGAATTTCCCCTATTTCCTTTTTCGAAGAAAAAAAACCTTCTGCATTTTATTTCAACTCGGTTTTTAATCGAAAATGACATGATAATTAGTGCACACACACACACACACACACACAAACAAACACAAATTACACATAATTATAGGTGCTAAAAAGCTTTTAGTTAGGGAAAAATGTTTTTGGTGTTTTGCATGATGTGAGAGTTTATTTTTTGCAGTATAAAACACTTGTATAGTTTGGTTCGAAGGAATTTTAGGAATATCAAAAGTTTATTTTCTTGAAAAAAATCAATTTTTTTTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGRAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAATATCAAAAGTTTATTTTCTTG</pcr_primer_p1>
		<pcr_primer_p2>TACGAATTAGTGTGGTGTAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>GGAATATCAAAAGTTTATTTTCTTGAAAAAAATCAATTTTTTTTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTA</canonical_amplicon>
		<polymorphic_amplicon>GGAATATCAAAAGTTTATTTTCTTGAAAAAAATCAATTTTTTTTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGRAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4437</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>313841</contig_pos>
        <strand>+</strand>
        <context>GCATGATGTG[A/G]GAGTTTATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAAAAGCTTTTAGTTAGGGAAAAATGTTTTTGGTGTTTTGCATGATGTG</left_flank>
        <right_flank>GAGTTTATTTTTTGCAGTATAAAACACTTGTATAGTTTGGTTCGAAGGAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCTTTTCCGTTTCCGCTTGTTCGATGGCTTTTTTTGGTTGGCTATTATTTTGCAAAATCACAGAGATATGAAATATGTTGGATTTTGAAATTTCTAGATTCTCTGAGATTCTGAAATTTAGGATTCTGAAATTCAAGATTTTGAGCTACTCACCATATTTTTGTATACCCAAAAAATACCAAAAATCTTGTTGTACCTGTTCTTCCTATTGACATTTTGGCTTTTTGTCTTCCCCTACCTCCCAAAAAATTTCCCTCTGTTCTTCTTCTTTTCCTCCTTATTTTTATTGGGCTCCTTTGCGAATTTCCCCTATTTCCTTTTTCGAAGAAAAAAAACCTTCTGCATTTTATTTCAACTCGGTTTTTAATCGAAAATGACATGATAATTAGTGCACACACACACACACACACACACAAACAAACACAAATTACACATAATTATAGGTGCTAAAAAGCTTTTAGTTAGGGAAAAATGTTTTTGGTGTTTTGCATGATGTGAGAGTTTATTTTTTGCAGTATAAAACACTTGTATAGTTTGGTTCGAAGGAATTTTAGGAATATCAAAAGTTTATTTTCTTGAAAAAAATCAATTTTTTTTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCA</canonical>
            <polymorphic>TGGCTTTTCCGTTTCCGCTTGTTCGATGGCTTTTTTTGGTTGGCTATTATTTTGCAAAATCACAGAGATATGAAATATGTTGGATTTTGAAATTTCTAGATTCTCTGAGATTCTGAAATTTAGGATTCTGAAATTCAAGATTTTGAGCTACTCACCATATTTTTGTATACCCAAAAAATACCAAAAATCTTGTTGTACCTGTTCTTCCTATTGACATTTTGGCTTTTTGTCTTCCCCTACCTCCCAAAAAATTTCCCTCTGTTCTTCTTCTTTTCCTCCTTATTTTTATTGGGCTCCTTTGCGAATTTCCCCTATTTCCTTTTTCGAAGAAAAAAAACCTTCTGCATTTTATTTCAACTCGGTTTTTAATCGAAAATGACATGATAATTAGTGCACACACACACACACACACACACAAACAAACACAAATTACACATAATTATAGGTGCTAAAAAGCTTTTAGTTAGGGAAAAATGTTTTTGGTGTTTTGCATGATGTGRGAGTTTATTTTTTGCAGTATAAAACACTTGTATAGTTTGGTTCGAAGGAATTTTAGGAATATCAAAAGTTTATTTTCTTGAAAAAAATCAATTTTTTTTCAAAGTCCTTTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGAAAATGACATGATAATTAGTG</pcr_primer_p1>
		<pcr_primer_p2>GTGAGATAAAGGACTTTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCGAAAATGACATGATAATTAGTGCACACACACACACACACACACACAAACAAACACAAATTACACATAATTATAGGTGCTAAAAAGCTTTTAGTTAGGGAAAAATGTTTTTGGTGTTTTGCATGATGTGAGAGTTTATTTTTTGCAGTATAAAACACTTGTATAGTTTGGTTCGAAGGAATTTTAGGAATATCAAAAGTTTATTTTCTTGAAAAAAATCAATTTTTTTTCAAAGTCCTTTATCTCAC</canonical_amplicon>
		<polymorphic_amplicon>TCGAAAATGACATGATAATTAGTGCACACACACACACACACACACACAAACAAACACAAATTACACATAATTATAGGTGCTAAAAAGCTTTTAGTTAGGGAAAAATGTTTTTGGTGTTTTGCATGATGTGRGAGTTTATTTTTTGCAGTATAAAACACTTGTATAGTTTGGTTCGAAGGAATTTTAGGAATATCAAAAGTTTATTTTCTTGAAAAAAATCAATTTTTTTTCAAAGTCCTTTATCTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4439</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>314698</contig_pos>
        <strand>+</strand>
        <context>AAAATGGCCA[C/T]CCCCCCSCCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTTTCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCA</left_flank>
        <right_flank>CCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCATCCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGCTGATAAAATACTTTTTATTTTATAATAAACATTTTTCCGTTGACCACTTTTTGCTATCTTTTACATGAACCGAGATATATGAACTCAAAGTTAACGCCTCTATTCTTGTACTTCGAGCTCAATTATCTCGCTTCAAGCTTGTTCTTCTACAGAGTGTTTACTGTAAGTCATGAAATTTTGGATACCCATCTTGTATAGTTTTTGATATATAAACTGCAGGATGAATAGATCTTTTTTGTTATTGAATTTTAGCAAAATTTGGTTTCACATTTTCTAAAACTTTGGCTCAGAATTTTCCTTTTTTTTTCATTTTCCGTTTTTCCCTCTCACTTTCTGTCGCTCTTCCTTCCCTAAAAAGAAAAATAATTCCAGCCCACCCCCCACTATACAAATTGGCTCATCAACCCATCGCC</canonical>
            <polymorphic>TTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCAYCCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGCTGATAAAATACTTTTTATTTTATAATAAACATTTTTCCGTTGACCACTTTTTGCTATCTTTTACATGAACCGAGATATATGAACTCAAAGTTAACGCCTCTATTCTTGTACTTCGAGCTCAATTATCTCGCTTCAAGCTTGTTCTTCTACAGAGTGTTTACTGTAAGTCATGAAATTTTGGATACCCATCTTGTATAGTTTTTGATATATAAACTGCAGGATGAATAGATCTTTTTTGTTATTGAATTTTAGCAAAATTTGGTTTCACATTTTCTAAAACTTTGGCTCAGAATTTTCCTTTTTTTTTCATTTTCCGTTTTTCCCTCTCACTTTCTGTCGCTCTTCCTTCCCTAAAAAGAAAAATAATTCCAGCCCACCCCCCACTATACAAATTGGCTCATCAACCCATCGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAGAAAGGAAAGAAACTGC</pcr_primer_p1>
		<pcr_primer_p2>GCTCGAAGTACAAGAATAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>ACAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCATCCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGCTGATAAAATACTTTTTATTTTATAATAAACATTTTTCCGTTGACCACTTTTTGCTATCTTTTACATGAACCGAGATATATGAACTCAAAGTTAACGCCTCTATTCTTGTACTTCGAGC</canonical_amplicon>
		<polymorphic_amplicon>ACAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCAYCCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGCTGATAAAATACTTTTTATTTTATAATAAACATTTTTCCGTTGACCACTTTTTGCTATCTTTTACATGAACCGAGATATATGAACTCAAAGTTAACGCCTCTATTCTTGTACTTCGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4440</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>314673</contig_pos>
        <strand></strand>
        <context>TTATTTCTMA[A/T]ACTAGGTACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTAA</left_flank>
        <right_flank>ACTAGGTACTCTGTAAAATGGCCATCCCCCCCCCCCCGCCCAATCTATCA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCATCCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGCTGATAAAATACTTTTTATTTTATAATAAACATTTTTCCGTTGACCACTTTTTGCTATCTTTTACATGAACCGAGATATATGAACTCAAAGTTAACGCCTCTATTCTTGTACTTCGAGCTCAATTATCTCGCTTCAAGCTTGTTCTTCTACAGAGTGTTTACTGTAAGTCATGAAATTTTGGATACCCATCTTGTATAGTTTTTGATATATAAACTGCAGGATGAATAGATCTTTTTTGTTATTGAATTTTAGCAAAATTTGGTTTCACATTTTCTAAAACTTTGGCTCAGAATTTTCCTTTTTTTTTCATTTTCCGTTTTTCCCTCTCACTTTCTGTCGCTCTTCCTTCCCTAAAAAGAAAAATAATTCCAGCCCACCCCCCACTATA</canonical>
            <polymorphic>GAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTAAWACTAGGTACTCTGTAAAATGGCCATCCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGCTGATAAAATACTTTTTATTTTATAATAAACATTTTTCCGTTGACCACTTTTTGCTATCTTTTACATGAACCGAGATATATGAACTCAAAGTTAACGCCTCTATTCTTGTACTTCGAGCTCAATTATCTCGCTTCAAGCTTGTTCTTCTACAGAGTGTTTACTGTAAGTCATGAAATTTTGGATACCCATCTTGTATAGTTTTTGATATATAAACTGCAGGATGAATAGATCTTTTTTGTTATTGAATTTTAGCAAAATTTGGTTTCACATTTTCTAAAACTTTGGCTCAGAATTTTCCTTTTTTTTTCATTTTCCGTTTTTCCCTCTCACTTTCTGTCGCTCTTCCTTCCCTAAAAAGAAAAATAATTCCAGCCCACCCCCCACTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAGAAAGGAAAGAAACTGC</pcr_primer_p1>
		<pcr_primer_p2>GCTCGAAGTACAAGAATAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>ACAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCATCCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGCTGATAAAATACTTTTTATTTTATAATAAACATTTTTCCGTTGACCACTTTTTGCTATCTTTTACATGAACCGAGATATATGAACTCAAAGTTAACGCCTCTATTCTTGTACTTCGAGC</canonical_amplicon>
		<polymorphic_amplicon>ACAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTAAWACTAGGTACTCTGTAAAATGGCCATCCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGCTGATAAAATACTTTTTATTTTATAATAAACATTTTTCCGTTGACCACTTTTTGCTATCTTTTACATGAACCGAGATATATGAACTCAAAGTTAACGCCTCTATTCTTGTACTTCGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4441</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>314671</contig_pos>
        <strand></strand>
        <context>ATTTATTTCT[A/C]AWACTAGGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCT</left_flank>
        <right_flank>AAACTAGGTACTCTGTAAAATGGCCATCCCCCCCCCCCCGCCCAATCTAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCATCCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGCTGATAAAATACTTTTTATTTTATAATAAACATTTTTCCGTTGACCACTTTTTGCTATCTTTTACATGAACCGAGATATATGAACTCAAAGTTAACGCCTCTATTCTTGTACTTCGAGCTCAATTATCTCGCTTCAAGCTTGTTCTTCTACAGAGTGTTTACTGTAAGTCATGAAATTTTGGATACCCATCTTGTATAGTTTTTGATATATAAACTGCAGGATGAATAGATCTTTTTTGTTATTGAATTTTAGCAAAATTTGGTTTCACATTTTCTAAAACTTTGGCTCAGAATTTTCCTTTTTTTTTCATTTTCCGTTTTTCCCTCTCACTTTCTGTCGCTCTTCCTTCCCTAAAAAGAAAAATAATTCCAGCCCACCCCCCACTA</canonical>
            <polymorphic>CTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTMAAACTAGGTACTCTGTAAAATGGCCATCCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGCTGATAAAATACTTTTTATTTTATAATAAACATTTTTCCGTTGACCACTTTTTGCTATCTTTTACATGAACCGAGATATATGAACTCAAAGTTAACGCCTCTATTCTTGTACTTCGAGCTCAATTATCTCGCTTCAAGCTTGTTCTTCTACAGAGTGTTTACTGTAAGTCATGAAATTTTGGATACCCATCTTGTATAGTTTTTGATATATAAACTGCAGGATGAATAGATCTTTTTTGTTATTGAATTTTAGCAAAATTTGGTTTCACATTTTCTAAAACTTTGGCTCAGAATTTTCCTTTTTTTTTCATTTTCCGTTTTTCCCTCTCACTTTCTGTCGCTCTTCCTTCCCTAAAAAGAAAAATAATTCCAGCCCACCCCCCACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAGAAAGGAAAGAAACTGC</pcr_primer_p1>
		<pcr_primer_p2>GCTCGAAGTACAAGAATAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>ACAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCATCCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGCTGATAAAATACTTTTTATTTTATAATAAACATTTTTCCGTTGACCACTTTTTGCTATCTTTTACATGAACCGAGATATATGAACTCAAAGTTAACGCCTCTATTCTTGTACTTCGAGC</canonical_amplicon>
		<polymorphic_amplicon>ACAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTMAAACTAGGTACTCTGTAAAATGGCCATCCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGCTGATAAAATACTTTTTATTTTATAATAAACATTTTTCCGTTGACCACTTTTTGCTATCTTTTACATGAACCGAGATATATGAACTCAAAGTTAACGCCTCTATTCTTGTACTTCGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4442</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>314577</contig_pos>
        <strand></strand>
        <context>TCCAGTTTTC[C/T]CTCCCCCGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTC</left_flank>
        <right_flank>CTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCATCCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGCTGATAAAATACTTTTTATTTTATAATAAACATTTTTCCGTTGACCACTTTTTGCTATCTTTTACATGAACCGAGATATATGAACTCAAAGTTAACGCCTCTATTCTTGTACTTCGAGCTCAATTATCTCGCTTCAAGCTTGTTCTTCTACAGAGTGTTTACTGTAAGTCATGAAATTTTGGATACCCATCTTGTATAGTTTTTGATATATAAACTGCAGGATGAATAGATCTTTTTTGTTATTGAATTTTAGCAAAATTTGGTTTCACATTTTCTAAAACTTTGGCTCAGAA</canonical>
            <polymorphic>AGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCYCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCATCCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGCTGATAAAATACTTTTTATTTTATAATAAACATTTTTCCGTTGACCACTTTTTGCTATCTTTTACATGAACCGAGATATATGAACTCAAAGTTAACGCCTCTATTCTTGTACTTCGAGCTCAATTATCTCGCTTCAAGCTTGTTCTTCTACAGAGTGTTTACTGTAAGTCATGAAATTTTGGATACCCATCTTGTATAGTTTTTGATATATAAACTGCAGGATGAATAGATCTTTTTTGTTATTGAATTTTAGCAAAATTTGGTTTCACATTTTCTAAAACTTTGGCTCAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGGAATTTTTAGACACTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTTCCTTTCTTGTCTGATGAC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAG</canonical_amplicon>
		<polymorphic_amplicon>CTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCYCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4443</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>314467</contig_pos>
        <strand>+</strand>
        <context>TTTTTTGACG[A/G]TTTTATTACC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACG</left_flank>
        <right_flank>TTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCATCCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGCTGATAAAATACTTTTTATTTTATAATAAACATTTTTCCGTTGACCACTTTTTGCTATCTTTTACATGAACCGAGATATATGAACTCAAAGTTAACGCCTCTATTCTTGTACTTCGAGCTCAATTATCTCGCTTCAAGCTTGTTCTTCTACAGAGTGTTTACTGTAAGTCATGAAATTTTGGA</canonical>
            <polymorphic>CAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGRTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCATCCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGCTGATAAAATACTTTTTATTTTATAATAAACATTTTTCCGTTGACCACTTTTTGCTATCTTTTACATGAACCGAGATATATGAACTCAAAGTTAACGCCTCTATTCTTGTACTTCGAGCTCAATTATCTCGCTTCAAGCTTGTTCTTCTACAGAGTGTTTACTGTAAGTCATGAAATTTTGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>499 481 20</canonical_bands>
                <polymorphic_bands>980 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCGGAATTTTTAGACACTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTTCCTTTCTTGTCTGATGAC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAG</canonical_amplicon>
		<polymorphic_amplicon>CTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGRTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4444</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>314449</contig_pos>
        <strand>+</strand>
        <context>GTTTTGTGTT[A/G]AGAGGGATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTT</left_flank>
        <right_flank>AGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCATCCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGCTGATAAAATACTTTTTATTTTATAATAAACATTTTTCCGTTGACCACTTTTTGCTATCTTTTACATGAACCGAGATATATGAACTCAAAGTTAACGCCTCTATTCTTGTACTTCGAGCTCAATTATCTCGCTTCAAGCTTGTTCTTCTACAGAGTGTTTACTGT</canonical>
            <polymorphic>TTATCTCACTTCCTGACACAGCTTTTAAGGAAATTTCAACTAATAAAAAACTTAAAATTACAAGCTAAACTTTTTTAAACTGAAAAGTTGTTCATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTRAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCATCCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGCTGATAAAATACTTTTTATTTTATAATAAACATTTTTCCGTTGACCACTTTTTGCTATCTTTTACATGAACCGAGATATATGAACTCAAAGTTAACGCCTCTATTCTTGTACTTCGAGCTCAATTATCTCGCTTCAAGCTTGTTCTTCTACAGAGTGTTTACTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>429 423 73 27 25 23</canonical_bands>
                <polymorphic_bands>852 73 27 25 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATCCACACAATCTCTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>CAGAAGTGATCCTAGCTAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTG</canonical_amplicon>
		<polymorphic_amplicon>AAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTRAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4451</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>341872</contig_pos>
        <strand></strand>
        <context>AAACTAACAA[G/A]AGAAGGAAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAACGGTTTGGAGGCTTTCAGAGCTGATAGAAATGAGCTGAAACTAACAA</left_flank>
        <right_flank>AGAAGGAAGGGTGGTGCCAAACTTTTTAAACATGAAAGAAGACAAAAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAATCATAACAATACTTATTTTTGAGAAACTGCTTTAAAAATTTCACTAGCCTTGAATCAAACGTAAAATCTACAAATTTTTGTGCTTCCGAGATACTTCTGTCTAAAGATCTATCCGTTTTTATCAGCCTGGGTAATCTGGCTCTTTATGGTTTAACGGGGGTTTATTATTTAAACGGGGCTTTTGAAATTTTAAGGGGCTTTGAGAATTAACGGGGGTTTACATATTAGACAGGGGTTTTCAAAAGGTGTCAGGACCATGTTTAAGGAAGTACCCAAAATGTTCCAAAGTGCTTCATTTTCTTGTTTTTTGCTTATTTCAGTTGACTTCTTCGTTTTTATCAGTCTTTTGATTGTTTATTTCCCTGATTCCCAAACCATGATACTTTTCTGTTTGAAAATAAAAGCAAGATTCAAAGTAGGAAAGATCGGTTGAGGTGTTGCATGTAAACGGTTTGGAGGCTTTCAGAGCTGATAGAAATGAGCTGAAACTAACAAGAGAAGGAAGGGTGGTGCCAAACTTTTTAAACATGAAAGAAGACAAAAAAAGAAAAAAAGTGATTTGAAAAACGAAGAAGTCAACTGAAATAAGCAAAAAACAAGAAAATGTAGCACTTTGGAACATTTTGGGTACTTCCTTAAACATGGTCCTGACACCTTTTGAAAACCCCCGTCTAATATTTGTACCCCCGTTAATTCTCGAAACCCCTTCAAAATTTCAAAACCCCCGGCTAATATTTAAACCCCCGTTAATTGTTTGAATCCTCGTTATACCATAAAGAGCCGGTAATTTTACCCCAACCTGTATAAATCTTATCGCATGCATAAATAATTACCTGAATTTCTCGGTTAATTTTCAAAATCTGGGCCAATCGTCCTGCATAATTTTTGTCTTTCCAAGACTCTCTGGTATAATATTTATGAATATCATCTGCCAGAACTTCTTGAAATCTCTCACAAATTCCAGCGATTTCTGTTCCCGAAAATCGATTTTCCGCA</canonical>
            <polymorphic>ACAATCATAACAATACTTATTTTTGAGAAACTGCTTTAAAAATTTCACTAGCCTTGAATCAAACGTAAAATCTACAAATTTTTGTGCTTCCGAGATACTTCTGTCTAAAGATCTATCCGTTTTTATCAGCCTGGGTAATCTGGCTCTTTATGGTTTAACGGGGGTTTATTATTTAAACGGGGCTTTTGAAATTTTAAGGGGCTTTGAGAATTAACGGGGGTTTACATATTAGACAGGGGTTTTCAAAAGGTGTCAGGACCATGTTTAAGGAAGTACCCAAAATGTTCCAAAGTGCTTCATTTTCTTGTTTTTTGCTTATTTCAGTTGACTTCTTCGTTTTTATCAGTCTTTTGATTGTTTATTTCCCTGATTCCCAAACCATGATACTTTTCTGTTTGAAAATAAAAGCAAGATTCAAAGTAGGAAAGATCGGTTGAGGTGTTGCATGTAAACGGTTTGGAGGCTTTCAGAGCTGATAGAAATGAGCTGAAACTAACAARAGAAGGAAGGGTGGTGCCAAACTTTTTAAACATGAAAGAAGACAAAAAAAGAAAAAAAGTGATTTGAAAAACGAAGAAGTCAACTGAAATAAGCAAAAAACAAGAAAATGTAGCACTTTGGAACATTTTGGGTACTTCCTTAAACATGGTCCTGACACCTTTTGAAAACCCCCGTCTAATATTTGTACCCCCGTTAATTCTCGAAACCCCTTCAAAATTTCAAAACCCCCGGCTAATATTTAAACCCCCGTTAATTGTTTGAATCCTCGTTATACCATAAAGAGCCGGTAATTTTACCCCAACCTGTATAAATCTTATCGCATGCATAAATAATTACCTGAATTTCTCGGTTAATTTTCAAAATCTGGGCCAATCGTCCTGCATAATTTTTGTCTTTCCAAGACTCTCTGGTATAATATTTATGAATATCATCTGCCAGAACTTCTTGAAATCTCTCACAAATTCCAGCGATTTCTGTTCCCGAAAATCGATTTTCCGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTAGGAAAGATCGGTTGAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTATACAGGTTGGGGTAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>396</pcr_amplicon_size>
		<canonical_amplicon>AAGTAGGAAAGATCGGTTGAGGTGTTGCATGTAAACGGTTTGGAGGCTTTCAGAGCTGATAGAAATGAGCTGAAACTAACAAGAGAAGGAAGGGTGGTGCCAAACTTTTTAAACATGAAAGAAGACAAAAAAAGAAAAAAAGTGATTTGAAAAACGAAGAAGTCAACTGAAATAAGCAAAAAACAAGAAAATGTAGCACTTTGGAACATTTTGGGTACTTCCTTAAACATGGTCCTGACACCTTTTGAAAACCCCCGTCTAATATTTGTACCCCCGTTAATTCTCGAAACCCCTTCAAAATTTCAAAACCCCCGGCTAATATTTAAACCCCCGTTAATTGTTTGAATCCTCGTTATACCATAAAGAGCCGGTAATTTTACCCCAACCTGTATAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAGTAGGAAAGATCGGTTGAGGTGTTGCATGTAAACGGTTTGGAGGCTTTCAGAGCTGATAGAAATGAGCTGAAACTAACAARAGAAGGAAGGGTGGTGCCAAACTTTTTAAACATGAAAGAAGACAAAAAAAGAAAAAAAGTGATTTGAAAAACGAAGAAGTCAACTGAAATAAGCAAAAAACAAGAAAATGTAGCACTTTGGAACATTTTGGGTACTTCCTTAAACATGGTCCTGACACCTTTTGAAAACCCCCGTCTAATATTTGTACCCCCGTTAATTCTCGAAACCCCTTCAAAATTTCAAAACCCCCGGCTAATATTTAAACCCCCGTTAATTGTTTGAATCCTCGTTATACCATAAAGAGCCGGTAATTTTACCCCAACCTGTATAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4452</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>341842</contig_pos>
        <strand></strand>
        <context>GAGGCTTTCA[G/A]AGCTGATAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTAGGAAAGATCGGTTGAGGTGTTGCATGTAAACGGTTTGGAGGCTTTCA</left_flank>
        <right_flank>AGCTGATAGAAATGAGCTGAAACTAACAAGAGAAGGAAGGGTGGTGCCAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACAACAGCATGCGGCGTGCCGTCTTTGGACAATCATAACAATACTTATTTTTGAGAAACTGCTTTAAAAATTTCACTAGCCTTGAATCAAACGTAAAATCTACAAATTTTTGTGCTTCCGAGATACTTCTGTCTAAAGATCTATCCGTTTTTATCAGCCTGGGTAATCTGGCTCTTTATGGTTTAACGGGGGTTTATTATTTAAACGGGGCTTTTGAAATTTTAAGGGGCTTTGAGAATTAACGGGGGTTTACATATTAGACAGGGGTTTTCAAAAGGTGTCAGGACCATGTTTAAGGAAGTACCCAAAATGTTCCAAAGTGCTTCATTTTCTTGTTTTTTGCTTATTTCAGTTGACTTCTTCGTTTTTATCAGTCTTTTGATTGTTTATTTCCCTGATTCCCAAACCATGATACTTTTCTGTTTGAAAATAAAAGCAAGATTCAAAGTAGGAAAGATCGGTTGAGGTGTTGCATGTAAACGGTTTGGAGGCTTTCAGAGCTGATAGAAATGAGCTGAAACTAACAAGAGAAGGAAGGGTGGTGCCAAACTTTTTAAACATGAAAGAAGACAAAAAAAGAAAAAAAGTGATTTGAAAAACGAAGAAGTCAACTGAAATAAGCAAAAAACAAGAAAATGTAGCACTTTGGAACATTTTGGGTACTTCCTTAAACATGGTCCTGACACCTTTTGAAAACCCCCGTCTAATATTTGTACCCCCGTTAATTCTCGAAACCCCTTCAAAATTTCAAAACCCCCGGCTAATATTTAAACCCCCGTTAATTGTTTGAATCCTCGTTATACCATAAAGAGCCGGTAATTTTACCCCAACCTGTATAAATCTTATCGCATGCATAAATAATTACCTGAATTTCTCGGTTAATTTTCAAAATCTGGGCCAATCGTCCTGCATAATTTTTGTCTTTCCAAGACTCTCTGGTATAATATTTATGAATATCATCTGCCAGAACTTCTTGAAATCTCTCACAAATTCCAGCG</canonical>
            <polymorphic>TCACAACAGCATGCGGCGTGCCGTCTTTGGACAATCATAACAATACTTATTTTTGAGAAACTGCTTTAAAAATTTCACTAGCCTTGAATCAAACGTAAAATCTACAAATTTTTGTGCTTCCGAGATACTTCTGTCTAAAGATCTATCCGTTTTTATCAGCCTGGGTAATCTGGCTCTTTATGGTTTAACGGGGGTTTATTATTTAAACGGGGCTTTTGAAATTTTAAGGGGCTTTGAGAATTAACGGGGGTTTACATATTAGACAGGGGTTTTCAAAAGGTGTCAGGACCATGTTTAAGGAAGTACCCAAAATGTTCCAAAGTGCTTCATTTTCTTGTTTTTTGCTTATTTCAGTTGACTTCTTCGTTTTTATCAGTCTTTTGATTGTTTATTTCCCTGATTCCCAAACCATGATACTTTTCTGTTTGAAAATAAAAGCAAGATTCAAAGTAGGAAAGATCGGTTGAGGTGTTGCATGTAAACGGTTTGGAGGCTTTCARAGCTGATAGAAATGAGCTGAAACTAACAAGAGAAGGAAGGGTGGTGCCAAACTTTTTAAACATGAAAGAAGACAAAAAAAGAAAAAAAGTGATTTGAAAAACGAAGAAGTCAACTGAAATAAGCAAAAAACAAGAAAATGTAGCACTTTGGAACATTTTGGGTACTTCCTTAAACATGGTCCTGACACCTTTTGAAAACCCCCGTCTAATATTTGTACCCCCGTTAATTCTCGAAACCCCTTCAAAATTTCAAAACCCCCGGCTAATATTTAAACCCCCGTTAATTGTTTGAATCCTCGTTATACCATAAAGAGCCGGTAATTTTACCCCAACCTGTATAAATCTTATCGCATGCATAAATAATTACCTGAATTTCTCGGTTAATTTTCAAAATCTGGGCCAATCGTCCTGCATAATTTTTGTCTTTCCAAGACTCTCTGGTATAATATTTATGAATATCATCTGCCAGAACTTCTTGAAATCTCTCACAAATTCCAGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>501 378 121</canonical_bands>
                <polymorphic_bands>879 121</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTAGGAAAGATCGGTTGAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTATACAGGTTGGGGTAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>396</pcr_amplicon_size>
		<canonical_amplicon>AAGTAGGAAAGATCGGTTGAGGTGTTGCATGTAAACGGTTTGGAGGCTTTCAGAGCTGATAGAAATGAGCTGAAACTAACAAGAGAAGGAAGGGTGGTGCCAAACTTTTTAAACATGAAAGAAGACAAAAAAAGAAAAAAAGTGATTTGAAAAACGAAGAAGTCAACTGAAATAAGCAAAAAACAAGAAAATGTAGCACTTTGGAACATTTTGGGTACTTCCTTAAACATGGTCCTGACACCTTTTGAAAACCCCCGTCTAATATTTGTACCCCCGTTAATTCTCGAAACCCCTTCAAAATTTCAAAACCCCCGGCTAATATTTAAACCCCCGTTAATTGTTTGAATCCTCGTTATACCATAAAGAGCCGGTAATTTTACCCCAACCTGTATAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAGTAGGAAAGATCGGTTGAGGTGTTGCATGTAAACGGTTTGGAGGCTTTCARAGCTGATAGAAATGAGCTGAAACTAACAAGAGAAGGAAGGGTGGTGCCAAACTTTTTAAACATGAAAGAAGACAAAAAAAGAAAAAAAGTGATTTGAAAAACGAAGAAGTCAACTGAAATAAGCAAAAAACAAGAAAATGTAGCACTTTGGAACATTTTGGGTACTTCCTTAAACATGGTCCTGACACCTTTTGAAAACCCCCGTCTAATATTTGTACCCCCGTTAATTCTCGAAACCCCTTCAAAATTTCAAAACCCCCGGCTAATATTTAAACCCCCGTTAATTGTTTGAATCCTCGTTATACCATAAAGAGCCGGTAATTTTACCCCAACCTGTATAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4453</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>341777</contig_pos>
        <strand></strand>
        <context>TTTKAAAATA[A/G]AAGCAAGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGTTTATTTCCCTGATTCCCAAACCATGATACTTTTCTGTTTGAAAATA</left_flank>
        <right_flank>AAGCAAGATTCAAAGTAGGAAAGATCGGTTGAGGTGTTGCATGTAAACGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCGGATGGTTCTCTTAAAAATTAAAGATTTATCGATTGCCAAAGTTGTTTCATCTCATGAAAATCACAACAGCATGCGGCGTGCCGTCTTTGGACAATCATAACAATACTTATTTTTGAGAAACTGCTTTAAAAATTTCACTAGCCTTGAATCAAACGTAAAATCTACAAATTTTTGTGCTTCCGAGATACTTCTGTCTAAAGATCTATCCGTTTTTATCAGCCTGGGTAATCTGGCTCTTTATGGTTTAACGGGGGTTTATTATTTAAACGGGGCTTTTGAAATTTTAAGGGGCTTTGAGAATTAACGGGGGTTTACATATTAGACAGGGGTTTTCAAAAGGTGTCAGGACCATGTTTAAGGAAGTACCCAAAATGTTCCAAAGTGCTTCATTTTCTTGTTTTTTGCTTATTTCAGTTGACTTCTTCGTTTTTATCAGTCTTTTGATTGTTTATTTCCCTGATTCCCAAACCATGATACTTTTCTGTTTGAAAATAAAAGCAAGATTCAAAGTAGGAAAGATCGGTTGAGGTGTTGCATGTAAACGGTTTGGAGGCTTTCAGAGCTGATAGAAATGAGCTGAAACTAACAAGAGAAGGAAGGGTGGTGCCAAACTTTTTAAACATGAAAGAAGACAAAAAAAGAAAAAAAGTGATTTGAAAAACGAAGAAGTCAACTGAAATAAGCAAAAAACAAGAAAATGTAGCACTTTGGAACATTTTGGGTACTTCCTTAAACATGGTCCTGACACCTTTTGAAAACCCCCGTCTAATATTTGTACCCCCGTTAATTCTCGAAACCCCTTCAAAATTTCAAAACCCCCGGCTAATATTTAAACCCCCGTTAATTGTTTGAATCCTCGTTATACCATAAAGAGCCGGTAATTTTACCCCAACCTGTATAAATCTTATCGCATGCATAAATAATTACCTGAATTTCTCGGTTAATTTTCAAAATCTGGGCCAATCGTCCTGCATAATTTTTGTCTTTCCAAGACT</canonical>
            <polymorphic>TGTCGGATGGTTCTCTTAAAAATTAAAGATTTATCGATTGCCAAAGTTGTTTCATCTCATGAAAATCACAACAGCATGCGGCGTGCCGTCTTTGGACAATCATAACAATACTTATTTTTGAGAAACTGCTTTAAAAATTTCACTAGCCTTGAATCAAACGTAAAATCTACAAATTTTTGTGCTTCCGAGATACTTCTGTCTAAAGATCTATCCGTTTTTATCAGCCTGGGTAATCTGGCTCTTTATGGTTTAACGGGGGTTTATTATTTAAACGGGGCTTTTGAAATTTTAAGGGGCTTTGAGAATTAACGGGGGTTTACATATTAGACAGGGGTTTTCAAAAGGTGTCAGGACCATGTTTAAGGAAGTACCCAAAATGTTCCAAAGTGCTTCATTTTCTTGTTTTTTGCTTATTTCAGTTGACTTCTTCGTTTTTATCAGTCTTTTGATTGTTTATTTCCCTGATTCCCAAACCATGATACTTTTCTGTTTGAAAATARAAGCAAGATTCAAAGTAGGAAAGATCGGTTGAGGTGTTGCATGTAAACGGTTTGGAGGCTTTCAGAGCTGATAGAAATGAGCTGAAACTAACAAGAGAAGGAAGGGTGGTGCCAAACTTTTTAAACATGAAAGAAGACAAAAAAAGAAAAAAAGTGATTTGAAAAACGAAGAAGTCAACTGAAATAAGCAAAAAACAAGAAAATGTAGCACTTTGGAACATTTTGGGTACTTCCTTAAACATGGTCCTGACACCTTTTGAAAACCCCCGTCTAATATTTGTACCCCCGTTAATTCTCGAAACCCCTTCAAAATTTCAAAACCCCCGGCTAATATTTAAACCCCCGTTAATTGTTTGAATCCTCGTTATACCATAAAGAGCCGGTAATTTTACCCCAACCTGTATAAATCTTATCGCATGCATAAATAATTACCTGAATTTCTCGGTTAATTTTCAAAATCTGGGCCAATCGTCCTGCATAATTTTTGTCTTTCCAAGACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGATGGTTCTCTTAAAAATTA</pcr_primer_p1>
		<pcr_primer_p2>TGTTAGTTTCAGCTCATTTCTATC</pcr_primer_p2>
		<pcr_amplicon_size>590</pcr_amplicon_size>
		<canonical_amplicon>CGGATGGTTCTCTTAAAAATTAAAGATTTATCGATTGCCAAAGTTGTTTCATCTCATGAAAATCACAACAGCATGCGGCGTGCCGTCTTTGGACAATCATAACAATACTTATTTTTGAGAAACTGCTTTAAAAATTTCACTAGCCTTGAATCAAACGTAAAATCTACAAATTTTTGTGCTTCCGAGATACTTCTGTCTAAAGATCTATCCGTTTTTATCAGCCTGGGTAATCTGGCTCTTTATGGTTTAACGGGGGTTTATTATTTAAACGGGGCTTTTGAAATTTTAAGGGGCTTTGAGAATTAACGGGGGTTTACATATTAGACAGGGGTTTTCAAAAGGTGTCAGGACCATGTTTAAGGAAGTACCCAAAATGTTCCAAAGTGCTTCATTTTCTTGTTTTTTGCTTATTTCAGTTGACTTCTTCGTTTTTATCAGTCTTTTGATTGTTTATTTCCCTGATTCCCAAACCATGATACTTTTCTGTTTGAAAATAAAAGCAAGATTCAAAGTAGGAAAGATCGGTTGAGGTGTTGCATGTAAACGGTTTGGAGGCTTTCAGAGCTGATAGAAATGAGCTGAAACTAACA</canonical_amplicon>
		<polymorphic_amplicon>CGGATGGTTCTCTTAAAAATTAAAGATTTATCGATTGCCAAAGTTGTTTCATCTCATGAAAATCACAACAGCATGCGGCGTGCCGTCTTTGGACAATCATAACAATACTTATTTTTGAGAAACTGCTTTAAAAATTTCACTAGCCTTGAATCAAACGTAAAATCTACAAATTTTTGTGCTTCCGAGATACTTCTGTCTAAAGATCTATCCGTTTTTATCAGCCTGGGTAATCTGGCTCTTTATGGTTTAACGGGGGTTTATTATTTAAACGGGGCTTTTGAAATTTTAAGGGGCTTTGAGAATTAACGGGGGTTTACATATTAGACAGGGGTTTTCAAAAGGTGTCAGGACCATGTTTAAGGAAGTACCCAAAATGTTCCAAAGTGCTTCATTTTCTTGTTTTTTGCTTATTTCAGTTGACTTCTTCGTTTTTATCAGTCTTTTGATTGTTTATTTCCCTGATTCCCAAACCATGATACTTTTCTGTTTGAAAATARAAGCAAGATTCAAAGTAGGAAAGATCGGTTGAGGTGTTGCATGTAAACGGTTTGGAGGCTTTCAGAGCTGATAGAAATGAGCTGAAACTAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4454</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>341770</contig_pos>
        <strand></strand>
        <context>ttttctGTTT[G/T]AAAATARAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTTTGATTGTTTATTTCCCTGATTCCCAAACCATGATACTTTTCTGTTT</left_flank>
        <right_flank>AAAATAAAAGCAAGATTCAAAGTAGGAAAGATCGGTTGAGGTGTTGCATG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGAAGTTGTCGGATGGTTCTCTTAAAAATTAAAGATTTATCGATTGCCAAAGTTGTTTCATCTCATGAAAATCACAACAGCATGCGGCGTGCCGTCTTTGGACAATCATAACAATACTTATTTTTGAGAAACTGCTTTAAAAATTTCACTAGCCTTGAATCAAACGTAAAATCTACAAATTTTTGTGCTTCCGAGATACTTCTGTCTAAAGATCTATCCGTTTTTATCAGCCTGGGTAATCTGGCTCTTTATGGTTTAACGGGGGTTTATTATTTAAACGGGGCTTTTGAAATTTTAAGGGGCTTTGAGAATTAACGGGGGTTTACATATTAGACAGGGGTTTTCAAAAGGTGTCAGGACCATGTTTAAGGAAGTACCCAAAATGTTCCAAAGTGCTTCATTTTCTTGTTTTTTGCTTATTTCAGTTGACTTCTTCGTTTTTATCAGTCTTTTGATTGTTTATTTCCCTGATTCCCAAACCATGATACTTTTCTGTTTGAAAATAAAAGCAAGATTCAAAGTAGGAAAGATCGGTTGAGGTGTTGCATGTAAACGGTTTGGAGGCTTTCAGAGCTGATAGAAATGAGCTGAAACTAACAAGAGAAGGAAGGGTGGTGCCAAACTTTTTAAACATGAAAGAAGACAAAAAAAGAAAAAAAGTGATTTGAAAAACGAAGAAGTCAACTGAAATAAGCAAAAAACAAGAAAATGTAGCACTTTGGAACATTTTGGGTACTTCCTTAAACATGGTCCTGACACCTTTTGAAAACCCCCGTCTAATATTTGTACCCCCGTTAATTCTCGAAACCCCTTCAAAATTTCAAAACCCCCGGCTAATATTTAAACCCCCGTTAATTGTTTGAATCCTCGTTATACCATAAAGAGCCGGTAATTTTACCCCAACCTGTATAAATCTTATCGCATGCATAAATAATTACCTGAATTTCTCGGTTAATTTTCAAAATCTGGGCCAATCGTCCTGCATAATTTTTGTCTTTC</canonical>
            <polymorphic>GCGAAGTTGTCGGATGGTTCTCTTAAAAATTAAAGATTTATCGATTGCCAAAGTTGTTTCATCTCATGAAAATCACAACAGCATGCGGCGTGCCGTCTTTGGACAATCATAACAATACTTATTTTTGAGAAACTGCTTTAAAAATTTCACTAGCCTTGAATCAAACGTAAAATCTACAAATTTTTGTGCTTCCGAGATACTTCTGTCTAAAGATCTATCCGTTTTTATCAGCCTGGGTAATCTGGCTCTTTATGGTTTAACGGGGGTTTATTATTTAAACGGGGCTTTTGAAATTTTAAGGGGCTTTGAGAATTAACGGGGGTTTACATATTAGACAGGGGTTTTCAAAAGGTGTCAGGACCATGTTTAAGGAAGTACCCAAAATGTTCCAAAGTGCTTCATTTTCTTGTTTTTTGCTTATTTCAGTTGACTTCTTCGTTTTTATCAGTCTTTTGATTGTTTATTTCCCTGATTCCCAAACCATGATACTTTTCTGTTTKAAAATAAAAGCAAGATTCAAAGTAGGAAAGATCGGTTGAGGTGTTGCATGTAAACGGTTTGGAGGCTTTCAGAGCTGATAGAAATGAGCTGAAACTAACAAGAGAAGGAAGGGTGGTGCCAAACTTTTTAAACATGAAAGAAGACAAAAAAAGAAAAAAAGTGATTTGAAAAACGAAGAAGTCAACTGAAATAAGCAAAAAACAAGAAAATGTAGCACTTTGGAACATTTTGGGTACTTCCTTAAACATGGTCCTGACACCTTTTGAAAACCCCCGTCTAATATTTGTACCCCCGTTAATTCTCGAAACCCCTTCAAAATTTCAAAACCCCCGGCTAATATTTAAACCCCCGTTAATTGTTTGAATCCTCGTTATACCATAAAGAGCCGGTAATTTTACCCCAACCTGTATAAATCTTATCGCATGCATAAATAATTACCTGAATTTCTCGGTTAATTTTCAAAATCTGGGCCAATCGTCCTGCATAATTTTTGTCTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGATGGTTCTCTTAAAAATTA</pcr_primer_p1>
		<pcr_primer_p2>GTTTACATGCAACACCTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>545</pcr_amplicon_size>
		<canonical_amplicon>CGGATGGTTCTCTTAAAAATTAAAGATTTATCGATTGCCAAAGTTGTTTCATCTCATGAAAATCACAACAGCATGCGGCGTGCCGTCTTTGGACAATCATAACAATACTTATTTTTGAGAAACTGCTTTAAAAATTTCACTAGCCTTGAATCAAACGTAAAATCTACAAATTTTTGTGCTTCCGAGATACTTCTGTCTAAAGATCTATCCGTTTTTATCAGCCTGGGTAATCTGGCTCTTTATGGTTTAACGGGGGTTTATTATTTAAACGGGGCTTTTGAAATTTTAAGGGGCTTTGAGAATTAACGGGGGTTTACATATTAGACAGGGGTTTTCAAAAGGTGTCAGGACCATGTTTAAGGAAGTACCCAAAATGTTCCAAAGTGCTTCATTTTCTTGTTTTTTGCTTATTTCAGTTGACTTCTTCGTTTTTATCAGTCTTTTGATTGTTTATTTCCCTGATTCCCAAACCATGATACTTTTCTGTTTGAAAATAAAAGCAAGATTCAAAGTAGGAAAGATCGGTTGAGGTGTTGCATGTAAAC</canonical_amplicon>
		<polymorphic_amplicon>CGGATGGTTCTCTTAAAAATTAAAGATTTATCGATTGCCAAAGTTGTTTCATCTCATGAAAATCACAACAGCATGCGGCGTGCCGTCTTTGGACAATCATAACAATACTTATTTTTGAGAAACTGCTTTAAAAATTTCACTAGCCTTGAATCAAACGTAAAATCTACAAATTTTTGTGCTTCCGAGATACTTCTGTCTAAAGATCTATCCGTTTTTATCAGCCTGGGTAATCTGGCTCTTTATGGTTTAACGGGGGTTTATTATTTAAACGGGGCTTTTGAAATTTTAAGGGGCTTTGAGAATTAACGGGGGTTTACATATTAGACAGGGGTTTTCAAAAGGTGTCAGGACCATGTTTAAGGAAGTACCCAAAATGTTCCAAAGTGCTTCATTTTCTTGTTTTTTGCTTATTTCAGTTGACTTCTTCGTTTTTATCAGTCTTTTGATTGTTTATTTCCCTGATTCCCAAACCATGATACTTTTCTGTTTKAAAATAAAAGCAAGATTCAAAGTAGGAAAGATCGGTTGAGGTGTTGCATGTAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4455</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>410721</contig_pos>
        <strand>+</strand>
        <context>TAAAAACGAA[A/G]AAGTACCTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATTCTGAAAATCTCAGAACATTCAGAATCTCAGAATCTTAAAAACGAA</left_flank>
        <right_flank>AAGTACCTCTCCGTTGAAACATATATAAATAATTGCATTTGATGTGCAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGGCCTGGGTCTAGGGGCCTGGGCCTGGGGGCCTGGGGGCCTGGGTCTGGGGGCCTGGGCCTGGGGCCTGGGAGAAATCTTACTATTGGTTAGAAACAAAGCCAAAAATCTCAGGAAATGTTATGAACTTTATTAAACTCAAAAAAATTAATTTGAATTTTGATTATTCAATCGAATTGTTCGGAATGGTTGATGACTTCTAGCCGGTATGTATCTAACGGGAGTATTTGAATTTTGTACTGTAGTTGTTCTAGCATTTTCGGGTAGAGTGGCCAATGATTGGTTGACTTTCGGAGTAGGAGAACGGACCAAATGGAAGAGTTCCAGAATTTTGTGTAGTTTGTAGGGAATCAGATTTTCCTGGACCTAGAACAAGAACTTCAGAATTTCAGAATTACAGAATTTTAGAATTTTAGACTTTTAGAATTTCAAAACTTTAGCATTTCAATGATTCTGAAAATCTCAGAACATTCAGAATCTCAGAATCTTAAAAACGAAGAAGTACCTCTCCGTTGAAACATATATAAATAATTGCATTTGATGTGCAATTCAGTGTGTACAGTGTTGGTACCGAAATGAACCATTCGACATCTTTTGTGGCTAAAATAATTGGGAGAACTCGAAAAAGGACCCAGGCAAATGTGTAGAAAGCCAAAAGGAGACTAAATTGAATAGCGCATCTGGAAAAAATTTTAGAAATCCAGAAATGTCTAAATTTCTCCATTTTGACCTAATATCCCGATTTCTCCGAACTTTCTGTCTTCCACCTCCAACTGACACAGTAGCTGGTGAGTAGTGGTGTATTTTCCAGAAGATCTAAATTTTCAAAAAAAATTCGAATTTCAAAATCTCAATTTCCCACTAGAGTAACGTGTCGACACGGTCGTCGAGCGATTTTGAGTCGAAATGTCGTTTTTAAGGAGTCGACCAAAGTCGACACGACACCGGCCTAACTATATGGTGACCTAATTTTCTCAAAATAAATTTTCTAGGACGCGA</canonical>
            <polymorphic>GGGGCCTGGGTCTAGGGGCCTGGGCCTGGGGGCCTGGGGGCCTGGGTCTGGGGGCCTGGGCCTGGGGCCTGGGAGAAATCTTACTATTGGTTAGAAACAAAGCCAAAAATCTCAGGAAATGTTATGAACTTTATTAAACTCAAAAAAATTAATTTGAATTTTGATTATTCAATCGAATTGTTCGGAATGGTTGATGACTTCTAGCCGGTATGTATCTAACGGGAGTATTTGAATTTTGTACTGTAGTTGTTCTAGCATTTTCGGGTAGAGTGGCCAATGATTGGTTGACTTTCGGAGTAGGAGAACGGACCAAATGGAAGAGTTCCAGAATTTTGTGTAGTTTGTAGGGAATCAGATTTTCCTGGACCTAGAACAAGAACTTCAGAATTTCAGAATTACAGAATTTTAGAATTTTAGACTTTTAGAATTTCAAAACTTTAGCATTTCAATGATTCTGAAAATCTCAGAACATTCAGAATCTCAGAATCTTAAAAACGAARAAGTACCTCTCCGTTGAAACATATATAAATAATTGCATTTGATGTGCAATTCAGTGTGTACAGTGTTGGTACCGAAATGAACCATTCGACATCTTTTGTGGCTAAAATAATTGGGAGAACTCGAAAAAGGACCCAGGCAAATGTGTAGAAAGCCAAAAGGAGACTAAATTGAATAGCGCATCTGGAAAAAATTTTAGAAATCCAGAAATGTCTAAATTTCTCCATTTTGACCTAATATCCCGATTTCTCCGAACTTTCTGTCTTCCACCTCCAACTGACACAGTAGCTGGTGAGTAGTGGTGTATTTTCCAGAAGATCTAAATTTTCAAAAAAAATTCGAATTTCAAAATCTCAATTTCCCACTAGAGTAACGTGTCGACACGGTCGTCGAGCGATTTTGAGTCGAAATGTCGTTTTTAAGGAGTCGACCAAAGTCGACACGACACCGGCCTAACTATATGGTGACCTAATTTTCTCAAAATAAATTTTCTAGGACGCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCCAGAATTTTGTGTAGTTTG</pcr_primer_p1>
		<pcr_primer_p2>TACCAACACTGTACACACTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTCCAGAATTTTGTGTAGTTTGTAGGGAATCAGATTTTCCTGGACCTAGAACAAGAACTTCAGAATTTCAGAATTACAGAATTTTAGAATTTTAGACTTTTAGAATTTCAAAACTTTAGCATTTCAATGATTCTGAAAATCTCAGAACATTCAGAATCTCAGAATCTTAAAAACGAAGAAGTACCTCTCCGTTGAAACATATATAAATAATTGCATTTGATGTGCAATTCAGTGTGTACAGTGTTGGTA</canonical_amplicon>
		<polymorphic_amplicon>GTTCCAGAATTTTGTGTAGTTTGTAGGGAATCAGATTTTCCTGGACCTAGAACAAGAACTTCAGAATTTCAGAATTACAGAATTTTAGAATTTTAGACTTTTAGAATTTCAAAACTTTAGCATTTCAATGATTCTGAAAATCTCAGAACATTCAGAATCTCAGAATCTTAAAAACGAARAAGTACCTCTCCGTTGAAACATATATAAATAATTGCATTTGATGTGCAATTCAGTGTGTACAGTGTTGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4456</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>410735</contig_pos>
        <strand>+</strand>
        <context>TACCTCTCCG[C/T]TGAAACATAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGAACATTCAGAATCTCAGAATCTTAAAAACGAAGAAGTACCTCTCCG</left_flank>
        <right_flank>TGAAACATATATAAATAATTGCATTTGATGTGCAATTCAGTGTGTACAGT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGGCCTGGGCCTGGGGGCCTGGGGGCCTGGGTCTGGGGGCCTGGGCCTGGGGCCTGGGAGAAATCTTACTATTGGTTAGAAACAAAGCCAAAAATCTCAGGAAATGTTATGAACTTTATTAAACTCAAAAAAATTAATTTGAATTTTGATTATTCAATCGAATTGTTCGGAATGGTTGATGACTTCTAGCCGGTATGTATCTAACGGGAGTATTTGAATTTTGTACTGTAGTTGTTCTAGCATTTTCGGGTAGAGTGGCCAATGATTGGTTGACTTTCGGAGTAGGAGAACGGACCAAATGGAAGAGTTCCAGAATTTTGTGTAGTTTGTAGGGAATCAGATTTTCCTGGACCTAGAACAAGAACTTCAGAATTTCAGAATTACAGAATTTTAGAATTTTAGACTTTTAGAATTTCAAAACTTTAGCATTTCAATGATTCTGAAAATCTCAGAACATTCAGAATCTCAGAATCTTAAAAACGAAGAAGTACCTCTCCGTTGAAACATATATAAATAATTGCATTTGATGTGCAATTCAGTGTGTACAGTGTTGGTACCGAAATGAACCATTCGACATCTTTTGTGGCTAAAATAATTGGGAGAACTCGAAAAAGGACCCAGGCAAATGTGTAGAAAGCCAAAAGGAGACTAAATTGAATAGCGCATCTGGAAAAAATTTTAGAAATCCAGAAATGTCTAAATTTCTCCATTTTGACCTAATATCCCGATTTCTCCGAACTTTCTGTCTTCCACCTCCAACTGACACAGTAGCTGGTGAGTAGTGGTGTATTTTCCAGAAGATCTAAATTTTCAAAAAAAATTCGAATTTCAAAATCTCAATTTCCCACTAGAGTAACGTGTCGACACGGTCGTCGAGCGATTTTGAGTCGAAATGTCGTTTTTAAGGAGTCGACCAAAGTCGACACGACACCGGCCTAACTATATGGTGACCTAATTTTCTCAAAATAAATTTTCTAGGACGCGAAACTTTTTATGCCT</canonical>
            <polymorphic>GGGGCCTGGGCCTGGGGGCCTGGGGGCCTGGGTCTGGGGGCCTGGGCCTGGGGCCTGGGAGAAATCTTACTATTGGTTAGAAACAAAGCCAAAAATCTCAGGAAATGTTATGAACTTTATTAAACTCAAAAAAATTAATTTGAATTTTGATTATTCAATCGAATTGTTCGGAATGGTTGATGACTTCTAGCCGGTATGTATCTAACGGGAGTATTTGAATTTTGTACTGTAGTTGTTCTAGCATTTTCGGGTAGAGTGGCCAATGATTGGTTGACTTTCGGAGTAGGAGAACGGACCAAATGGAAGAGTTCCAGAATTTTGTGTAGTTTGTAGGGAATCAGATTTTCCTGGACCTAGAACAAGAACTTCAGAATTTCAGAATTACAGAATTTTAGAATTTTAGACTTTTAGAATTTCAAAACTTTAGCATTTCAATGATTCTGAAAATCTCAGAACATTCAGAATCTCAGAATCTTAAAAACGAAGAAGTACCTCTCCGYTGAAACATATATAAATAATTGCATTTGATGTGCAATTCAGTGTGTACAGTGTTGGTACCGAAATGAACCATTCGACATCTTTTGTGGCTAAAATAATTGGGAGAACTCGAAAAAGGACCCAGGCAAATGTGTAGAAAGCCAAAAGGAGACTAAATTGAATAGCGCATCTGGAAAAAATTTTAGAAATCCAGAAATGTCTAAATTTCTCCATTTTGACCTAATATCCCGATTTCTCCGAACTTTCTGTCTTCCACCTCCAACTGACACAGTAGCTGGTGAGTAGTGGTGTATTTTCCAGAAGATCTAAATTTTCAAAAAAAATTCGAATTTCAAAATCTCAATTTCCCACTAGAGTAACGTGTCGACACGGTCGTCGAGCGATTTTGAGTCGAAATGTCGTTTTTAAGGAGTCGACCAAAGTCGACACGACACCGGCCTAACTATATGGTGACCTAATTTTCTCAAAATAAATTTTCTAGGACGCGAAACTTTTTATGCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCCAGAATTTTGTGTAGTTTG</pcr_primer_p1>
		<pcr_primer_p2>TACCAACACTGTACACACTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTCCAGAATTTTGTGTAGTTTGTAGGGAATCAGATTTTCCTGGACCTAGAACAAGAACTTCAGAATTTCAGAATTACAGAATTTTAGAATTTTAGACTTTTAGAATTTCAAAACTTTAGCATTTCAATGATTCTGAAAATCTCAGAACATTCAGAATCTCAGAATCTTAAAAACGAAGAAGTACCTCTCCGTTGAAACATATATAAATAATTGCATTTGATGTGCAATTCAGTGTGTACAGTGTTGGTA</canonical_amplicon>
		<polymorphic_amplicon>GTTCCAGAATTTTGTGTAGTTTGTAGGGAATCAGATTTTCCTGGACCTAGAACAAGAACTTCAGAATTTCAGAATTACAGAATTTTAGAATTTTAGACTTTTAGAATTTCAAAACTTTAGCATTTCAATGATTCTGAAAATCTCAGAACATTCAGAATCTCAGAATCTTAAAAACGAAGAAGTACCTCTCCGYTGAAACATATATAAATAATTGCATTTGATGTGCAATTCAGTGTGTACAGTGTTGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4457</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>410758</contig_pos>
        <strand>+</strand>
        <context>AAATAATTGC[A/G]TTTGATGTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTAAAAACGAAGAAGTACCTCTCCGTTGAAACATATATAAATAATTGC</left_flank>
        <right_flank>TTTGATGTGCAATTCAGTGTGTACAGTGTTGGTACCGAAATGAACCATTC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGCCTGGGTCTGGGGGCCTGGGCCTGGGGCCTGGGAGAAATCTTACTATTGGTTAGAAACAAAGCCAAAAATCTCAGGAAATGTTATGAACTTTATTAAACTCAAAAAAATTAATTTGAATTTTGATTATTCAATCGAATTGTTCGGAATGGTTGATGACTTCTAGCCGGTATGTATCTAACGGGAGTATTTGAATTTTGTACTGTAGTTGTTCTAGCATTTTCGGGTAGAGTGGCCAATGATTGGTTGACTTTCGGAGTAGGAGAACGGACCAAATGGAAGAGTTCCAGAATTTTGTGTAGTTTGTAGGGAATCAGATTTTCCTGGACCTAGAACAAGAACTTCAGAATTTCAGAATTACAGAATTTTAGAATTTTAGACTTTTAGAATTTCAAAACTTTAGCATTTCAATGATTCTGAAAATCTCAGAACATTCAGAATCTCAGAATCTTAAAAACGAAGAAGTACCTCTCCGTTGAAACATATATAAATAATTGCATTTGATGTGCAATTCAGTGTGTACAGTGTTGGTACCGAAATGAACCATTCGACATCTTTTGTGGCTAAAATAATTGGGAGAACTCGAAAAAGGACCCAGGCAAATGTGTAGAAAGCCAAAAGGAGACTAAATTGAATAGCGCATCTGGAAAAAATTTTAGAAATCCAGAAATGTCTAAATTTCTCCATTTTGACCTAATATCCCGATTTCTCCGAACTTTCTGTCTTCCACCTCCAACTGACACAGTAGCTGGTGAGTAGTGGTGTATTTTCCAGAAGATCTAAATTTTCAAAAAAAATTCGAATTTCAAAATCTCAATTTCCCACTAGAGTAACGTGTCGACACGGTCGTCGAGCGATTTTGAGTCGAAATGTCGTTTTTAAGGAGTCGACCAAAGTCGACACGACACCGGCCTAACTATATGGTGACCTAATTTTCTCAAAATAAATTTTCTAGGACGCGAAACTTTTTATGCCTTCAAATCATAGATGTCCGGAATT</canonical>
            <polymorphic>GGGCCTGGGTCTGGGGGCCTGGGCCTGGGGCCTGGGAGAAATCTTACTATTGGTTAGAAACAAAGCCAAAAATCTCAGGAAATGTTATGAACTTTATTAAACTCAAAAAAATTAATTTGAATTTTGATTATTCAATCGAATTGTTCGGAATGGTTGATGACTTCTAGCCGGTATGTATCTAACGGGAGTATTTGAATTTTGTACTGTAGTTGTTCTAGCATTTTCGGGTAGAGTGGCCAATGATTGGTTGACTTTCGGAGTAGGAGAACGGACCAAATGGAAGAGTTCCAGAATTTTGTGTAGTTTGTAGGGAATCAGATTTTCCTGGACCTAGAACAAGAACTTCAGAATTTCAGAATTACAGAATTTTAGAATTTTAGACTTTTAGAATTTCAAAACTTTAGCATTTCAATGATTCTGAAAATCTCAGAACATTCAGAATCTCAGAATCTTAAAAACGAAGAAGTACCTCTCCGTTGAAACATATATAAATAATTGCRTTTGATGTGCAATTCAGTGTGTACAGTGTTGGTACCGAAATGAACCATTCGACATCTTTTGTGGCTAAAATAATTGGGAGAACTCGAAAAAGGACCCAGGCAAATGTGTAGAAAGCCAAAAGGAGACTAAATTGAATAGCGCATCTGGAAAAAATTTTAGAAATCCAGAAATGTCTAAATTTCTCCATTTTGACCTAATATCCCGATTTCTCCGAACTTTCTGTCTTCCACCTCCAACTGACACAGTAGCTGGTGAGTAGTGGTGTATTTTCCAGAAGATCTAAATTTTCAAAAAAAATTCGAATTTCAAAATCTCAATTTCCCACTAGAGTAACGTGTCGACACGGTCGTCGAGCGATTTTGAGTCGAAATGTCGTTTTTAAGGAGTCGACCAAAGTCGACACGACACCGGCCTAACTATATGGTGACCTAATTTTCTCAAAATAAATTTTCTAGGACGCGAAACTTTTTATGCCTTCAAATCATAGATGTCCGGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>498 491 11</canonical_bands>
                <polymorphic_bands>509 491</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCATTTCAATGATTCTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGATGCGCTATTCAATTTAGTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GCATTTCAATGATTCTGAAAATCTCAGAACATTCAGAATCTCAGAATCTTAAAAACGAAGAAGTACCTCTCCGTTGAAACATATATAAATAATTGCATTTGATGTGCAATTCAGTGTGTACAGTGTTGGTACCGAAATGAACCATTCGACATCTTTTGTGGCTAAAATAATTGGGAGAACTCGAAAAAGGACCCAGGCAAATGTGTAGAAAGCCAAAAGGAGACTAAATTGAATAGCGCATCT</canonical_amplicon>
		<polymorphic_amplicon>GCATTTCAATGATTCTGAAAATCTCAGAACATTCAGAATCTCAGAATCTTAAAAACGAAGAAGTACCTCTCCGTTGAAACATATATAAATAATTGCRTTTGATGTGCAATTCAGTGTGTACAGTGTTGGTACCGAAATGAACCATTCGACATCTTTTGTGGCTAAAATAATTGGGAGAACTCGAAAAAGGACCCAGGCAAATGTGTAGAAAGCCAAAAGGAGACTAAATTGAATAGCGCATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4458</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>410795</contig_pos>
        <strand>+</strand>
        <context>TGTTGGTACC[A/G]AAATGAACCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATAAATAATTGCATTTGATGTGCAATTCAGTGTGTACAGTGTTGGTACC</left_flank>
        <right_flank>AAATGAACCATTCGACATCTTTTGTGGCTAAAATAATTGGGAGAACTCGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATCTTACTATTGGTTAGAAACAAAGCCAAAAATCTCAGGAAATGTTATGAACTTTATTAAACTCAAAAAAATTAATTTGAATTTTGATTATTCAATCGAATTGTTCGGAATGGTTGATGACTTCTAGCCGGTATGTATCTAACGGGAGTATTTGAATTTTGTACTGTAGTTGTTCTAGCATTTTCGGGTAGAGTGGCCAATGATTGGTTGACTTTCGGAGTAGGAGAACGGACCAAATGGAAGAGTTCCAGAATTTTGTGTAGTTTGTAGGGAATCAGATTTTCCTGGACCTAGAACAAGAACTTCAGAATTTCAGAATTACAGAATTTTAGAATTTTAGACTTTTAGAATTTCAAAACTTTAGCATTTCAATGATTCTGAAAATCTCAGAACATTCAGAATCTCAGAATCTTAAAAACGAAGAAGTACCTCTCCGTTGAAACATATATAAATAATTGCATTTGATGTGCAATTCAGTGTGTACAGTGTTGGTACCGAAATGAACCATTCGACATCTTTTGTGGCTAAAATAATTGGGAGAACTCGAAAAAGGACCCAGGCAAATGTGTAGAAAGCCAAAAGGAGACTAAATTGAATAGCGCATCTGGAAAAAATTTTAGAAATCCAGAAATGTCTAAATTTCTCCATTTTGACCTAATATCCCGATTTCTCCGAACTTTCTGTCTTCCACCTCCAACTGACACAGTAGCTGGTGAGTAGTGGTGTATTTTCCAGAAGATCTAAATTTTCAAAAAAAATTCGAATTTCAAAATCTCAATTTCCCACTAGAGTAACGTGTCGACACGGTCGTCGAGCGATTTTGAGTCGAAATGTCGTTTTTAAGGAGTCGACCAAAGTCGACACGACACCGGCCTAACTATATGGTGACCTAATTTTCTCAAAATAAATTTTCTAGGACGCGAAACTTTTTATGCCTTCAAATCATAGATGTCCGGAATTACTTTTTTGAGAGACGGAATCCGGTATAAACTAATTT</canonical>
            <polymorphic>GAAATCTTACTATTGGTTAGAAACAAAGCCAAAAATCTCAGGAAATGTTATGAACTTTATTAAACTCAAAAAAATTAATTTGAATTTTGATTATTCAATCGAATTGTTCGGAATGGTTGATGACTTCTAGCCGGTATGTATCTAACGGGAGTATTTGAATTTTGTACTGTAGTTGTTCTAGCATTTTCGGGTAGAGTGGCCAATGATTGGTTGACTTTCGGAGTAGGAGAACGGACCAAATGGAAGAGTTCCAGAATTTTGTGTAGTTTGTAGGGAATCAGATTTTCCTGGACCTAGAACAAGAACTTCAGAATTTCAGAATTACAGAATTTTAGAATTTTAGACTTTTAGAATTTCAAAACTTTAGCATTTCAATGATTCTGAAAATCTCAGAACATTCAGAATCTCAGAATCTTAAAAACGAAGAAGTACCTCTCCGTTGAAACATATATAAATAATTGCATTTGATGTGCAATTCAGTGTGTACAGTGTTGGTACCRAAATGAACCATTCGACATCTTTTGTGGCTAAAATAATTGGGAGAACTCGAAAAAGGACCCAGGCAAATGTGTAGAAAGCCAAAAGGAGACTAAATTGAATAGCGCATCTGGAAAAAATTTTAGAAATCCAGAAATGTCTAAATTTCTCCATTTTGACCTAATATCCCGATTTCTCCGAACTTTCTGTCTTCCACCTCCAACTGACACAGTAGCTGGTGAGTAGTGGTGTATTTTCCAGAAGATCTAAATTTTCAAAAAAAATTCGAATTTCAAAATCTCAATTTCCCACTAGAGTAACGTGTCGACACGGTCGTCGAGCGATTTTGAGTCGAAATGTCGTTTTTAAGGAGTCGACCAAAGTCGACACGACACCGGCCTAACTATATGGTGACCTAATTTTCTCAAAATAAATTTTCTAGGACGCGAAACTTTTTATGCCTTCAAATCATAGATGTCCGGAATTACTTTTTTGAGAGACGGAATCCGGTATAAACTAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCATTTCAATGATTCTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGATGCGCTATTCAATTTAGTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GCATTTCAATGATTCTGAAAATCTCAGAACATTCAGAATCTCAGAATCTTAAAAACGAAGAAGTACCTCTCCGTTGAAACATATATAAATAATTGCATTTGATGTGCAATTCAGTGTGTACAGTGTTGGTACCGAAATGAACCATTCGACATCTTTTGTGGCTAAAATAATTGGGAGAACTCGAAAAAGGACCCAGGCAAATGTGTAGAAAGCCAAAAGGAGACTAAATTGAATAGCGCATCT</canonical_amplicon>
		<polymorphic_amplicon>GCATTTCAATGATTCTGAAAATCTCAGAACATTCAGAATCTCAGAATCTTAAAAACGAAGAAGTACCTCTCCGTTGAAACATATATAAATAATTGCATTTGATGTGCAATTCAGTGTGTACAGTGTTGGTACCRAAATGAACCATTCGACATCTTTTGTGGCTAAAATAATTGGGAGAACTCGAAAAAGGACCCAGGCAAATGTGTAGAAAGCCAAAAGGAGACTAAATTGAATAGCGCATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4459</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>410950</contig_pos>
        <strand>+</strand>
        <context>TCTCCATTTT[G/T]ACCTAATATC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATCTGGAAAAAATTTTAGAAATCCAGAAATGTCTAAATTTCTCCATTTT</left_flank>
        <right_flank>ACCTAATATCCCGATTTCTCCGAACTTTCTGTCTTCCACCTCCAACTGAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAATTTTGTACTGTAGTTGTTCTAGCATTTTCGGGTAGAGTGGCCAATGATTGGTTGACTTTCGGAGTAGGAGAACGGACCAAATGGAAGAGTTCCAGAATTTTGTGTAGTTTGTAGGGAATCAGATTTTCCTGGACCTAGAACAAGAACTTCAGAATTTCAGAATTACAGAATTTTAGAATTTTAGACTTTTAGAATTTCAAAACTTTAGCATTTCAATGATTCTGAAAATCTCAGAACATTCAGAATCTCAGAATCTTAAAAACGAAGAAGTACCTCTCCGTTGAAACATATATAAATAATTGCATTTGATGTGCAATTCAGTGTGTACAGTGTTGGTACCGAAATGAACCATTCGACATCTTTTGTGGCTAAAATAATTGGGAGAACTCGAAAAAGGACCCAGGCAAATGTGTAGAAAGCCAAAAGGAGACTAAATTGAATAGCGCATCTGGAAAAAATTTTAGAAATCCAGAAATGTCTAAATTTCTCCATTTTGACCTAATATCCCGATTTCTCCGAACTTTCTGTCTTCCACCTCCAACTGACACAGTAGCTGGTGAGTAGTGGTGTATTTTCCAGAAGATCTAAATTTTCAAAAAAAATTCGAATTTCAAAATCTCAATTTCCCACTAGAGTAACGTGTCGACACGGTCGTCGAGCGATTTTGAGTCGAAATGTCGTTTTTAAGGAGTCGACCAAAGTCGACACGACACCGGCCTAACTATATGGTGACCTAATTTTCTCAAAATAAATTTTCTAGGACGCGAAACTTTTTATGCCTTCAAATCATAGATGTCCGGAATTACTTTTTTGAGAGACGGAATCCGGTATAAACTAATTTTCTCGGAATCCGGAATACGGACAAATGAAAATTTCATAGAATACGGAATCCGGAATGACAGTAATTTCCCGGAATACGAAAAACGAAAAAATTCGCGGAATCCCGAGTCCGAATTCCGAACATCTCTGCTATAAATGGTATCATTTTCATCTAAT</canonical>
            <polymorphic>TGAATTTTGTACTGTAGTTGTTCTAGCATTTTCGGGTAGAGTGGCCAATGATTGGTTGACTTTCGGAGTAGGAGAACGGACCAAATGGAAGAGTTCCAGAATTTTGTGTAGTTTGTAGGGAATCAGATTTTCCTGGACCTAGAACAAGAACTTCAGAATTTCAGAATTACAGAATTTTAGAATTTTAGACTTTTAGAATTTCAAAACTTTAGCATTTCAATGATTCTGAAAATCTCAGAACATTCAGAATCTCAGAATCTTAAAAACGAAGAAGTACCTCTCCGTTGAAACATATATAAATAATTGCATTTGATGTGCAATTCAGTGTGTACAGTGTTGGTACCGAAATGAACCATTCGACATCTTTTGTGGCTAAAATAATTGGGAGAACTCGAAAAAGGACCCAGGCAAATGTGTAGAAAGCCAAAAGGAGACTAAATTGAATAGCGCATCTGGAAAAAATTTTAGAAATCCAGAAATGTCTAAATTTCTCCATTTTKACCTAATATCCCGATTTCTCCGAACTTTCTGTCTTCCACCTCCAACTGACACAGTAGCTGGTGAGTAGTGGTGTATTTTCCAGAAGATCTAAATTTTCAAAAAAAATTCGAATTTCAAAATCTCAATTTCCCACTAGAGTAACGTGTCGACACGGTCGTCGAGCGATTTTGAGTCGAAATGTCGTTTTTAAGGAGTCGACCAAAGTCGACACGACACCGGCCTAACTATATGGTGACCTAATTTTCTCAAAATAAATTTTCTAGGACGCGAAACTTTTTATGCCTTCAAATCATAGATGTCCGGAATTACTTTTTTGAGAGACGGAATCCGGTATAAACTAATTTTCTCGGAATCCGGAATACGGACAAATGAAAATTTCATAGAATACGGAATCCGGAATGACAGTAATTTCCCGGAATACGAAAAACGAAAAAATTCGCGGAATCCCGAGTCCGAATTCCGAACATCTCTGCTATAAATGGTATCATTTTCATCTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAATTCAGTGTGTACAGTGTT</pcr_primer_p1>
		<pcr_primer_p2>TCACCAGCTACTGTGTCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCAATTCAGTGTGTACAGTGTTGGTACCGAAATGAACCATTCGACATCTTTTGTGGCTAAAATAATTGGGAGAACTCGAAAAAGGACCCAGGCAAATGTGTAGAAAGCCAAAAGGAGACTAAATTGAATAGCGCATCTGGAAAAAATTTTAGAAATCCAGAAATGTCTAAATTTCTCCATTTTGACCTAATATCCCGATTTCTCCGAACTTTCTGTCTTCCACCTCCAACTGACACAGTAGCTGGTGA</canonical_amplicon>
		<polymorphic_amplicon>GCAATTCAGTGTGTACAGTGTTGGTACCGAAATGAACCATTCGACATCTTTTGTGGCTAAAATAATTGGGAGAACTCGAAAAAGGACCCAGGCAAATGTGTAGAAAGCCAAAAGGAGACTAAATTGAATAGCGCATCTGGAAAAAATTTTAGAAATCCAGAAATGTCTAAATTTCTCCATTTTKACCTAATATCCCGATTTCTCCGAACTTTCTGTCTTCCACCTCCAACTGACACAGTAGCTGGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4460</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>413920</contig_pos>
        <strand>+</strand>
        <context>ATTGCATAAC[A/T]AATCAACTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAAAATGAATTTTTGTGCAACATTTCTGATAGGTGAAACATTGCATAAC</left_flank>
        <right_flank>AATCAACTAAATCAAGGTTTCGAAAAATTCGAAAAATTCGAAAAACTCAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTTTTCAAAACACCCAGTATTAGCCTCTTGTACTTATTTAGGTCGCTGTGAATAATTATTGCTCATTATAAACTATTTTAAGCAATTTTTCCTCGAGTATTCAATAAAACTCACTCTTGGGTTTTCACCGACTTCATAAATTTATCAACCGCGATTTCCAAATACAACCCGTTTTCGAAAAATACCCTCATTAGTGTCGCATAGTACTCCGACTCGGAATTTGGTATGTAGAAACTGAAACTTTCACAACAAGAATTAAAAAAAAAATCTGAAAATTTCTCACAAATCTGAATAGGTCCTCCCTTTGCCTGATGTCATTTCTTGTTTTGCCAATTTTTTATTTCCATTAATTTCCAATCCGTTTTGAAATTGTTTCCATGCGTTTTGAATTCCTGGACTTTTGGAGGTTTCAAAAGTTTTGACGACATTTCGGCTGGCGAAAATGCCTGAAAATGAATTTTTGTGCAACATTTCTGATAGGTGAAACATTGCATAACAAATCAACTAAATCAAGGTTTCGAAAAATTCGAAAAATTCGAAAAACTCAAAAAAAAATTGTAATTTTCGAAAATCTCAAAAAAATCTTACCAACATCCAAATCCCAAAAAAGGTCCGATTCATCTAAAACAACACCAGTTGAATGGTGTACTGTAGAGAAATCGATTTCTTGCCAAATGTTAAAAATAGCATCATCTGCCATCAAAAAATAGCCCTGCACATTAGCTAATCCCATTTCTTTAGCCAAAGTTAAACAGTGGTATGCCGAATATCCCTTTCGCATTTCCGTCGGATTCATGTGTATAAAATTGAAAGGTTGGATGGTTGAGGTGTAATTATCGTGGTCCTTAACTTGGTCCGGATACCAGGACCCACAAAAAACGACAGCCGCAAAATATGGTTGATATAATCTTTGAATTATTCCATGACCGTAATTCCAGGGATAGTTATTGACCACTACTAGGACCTGAAAATTGATATTTTGGATAAATTTTCAATAT</canonical>
            <polymorphic>AGCTTTTCAAAACACCCAGTATTAGCCTCTTGTACTTATTTAGGTCGCTGTGAATAATTATTGCTCATTATAAACTATTTTAAGCAATTTTTCCTCGAGTATTCAATAAAACTCACTCTTGGGTTTTCACCGACTTCATAAATTTATCAACCGCGATTTCCAAATACAACCCGTTTTCGAAAAATACCCTCATTAGTGTCGCATAGTACTCCGACTCGGAATTTGGTATGTAGAAACTGAAACTTTCACAACAAGAATTAAAAAAAAAATCTGAAAATTTCTCACAAATCTGAATAGGTCCTCCCTTTGCCTGATGTCATTTCTTGTTTTGCCAATTTTTTATTTCCATTAATTTCCAATCCGTTTTGAAATTGTTTCCATGCGTTTTGAATTCCTGGACTTTTGGAGGTTTCAAAAGTTTTGACGACATTTCGGCTGGCGAAAATGCCTGAAAATGAATTTTTGTGCAACATTTCTGATAGGTGAAACATTGCATAACWAATCAACTAAATCAAGGTTTCGAAAAATTCGAAAAATTCGAAAAACTCAAAAAAAAATTGTAATTTTCGAAAATCTCAAAAAAATCTTACCAACATCCAAATCCCAAAAAAGGTCCGATTCATCTAAAACAACACCAGTTGAATGGTGTACTGTAGAGAAATCGATTTCTTGCCAAATGTTAAAAATAGCATCATCTGCCATCAAAAAATAGCCCTGCACATTAGCTAATCCCATTTCTTTAGCCAAAGTTAAACAGTGGTATGCCGAATATCCCTTTCGCATTTCCGTCGGATTCATGTGTATAAAATTGAAAGGTTGGATGGTTGAGGTGTAATTATCGTGGTCCTTAACTTGGTCCGGATACCAGGACCCACAAAAAACGACAGCCGCAAAATATGGTTGATATAATCTTTGAATTATTCCATGACCGTAATTCCAGGGATAGTTATTGACCACTACTAGGACCTGAAAATTGATATTTTGGATAAATTTTCAATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATCCGTTTTGAAATTGTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTGGATGTTGGTAAGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAATCCGTTTTGAAATTGTTTCCATGCGTTTTGAATTCCTGGACTTTTGGAGGTTTCAAAAGTTTTGACGACATTTCGGCTGGCGAAAATGCCTGAAAATGAATTTTTGTGCAACATTTCTGATAGGTGAAACATTGCATAACAAATCAACTAAATCAAGGTTTCGAAAAATTCGAAAAATTCGAAAAACTCAAAAAAAAATTGTAATTTTCGAAAATCTCAAAAAAATCTTACCAACATCCAAAT</canonical_amplicon>
		<polymorphic_amplicon>CAATCCGTTTTGAAATTGTTTCCATGCGTTTTGAATTCCTGGACTTTTGGAGGTTTCAAAAGTTTTGACGACATTTCGGCTGGCGAAAATGCCTGAAAATGAATTTTTGTGCAACATTTCTGATAGGTGAAACATTGCATAACWAATCAACTAAATCAAGGTTTCGAAAAATTCGAAAAATTCGAAAAACTCAAAAAAAAATTGTAATTTTCGAAAATCTCAAAAAAATCTTACCAACATCCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4461</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>413898</contig_pos>
        <strand>+</strand>
        <context>CAACATTTCT[C/G]ATAGGTGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CATTTCGGCTGGCGAAAATGCCTGAAAATGAATTTTTGTGCAACATTTCT</left_flank>
        <right_flank>ATAGGTGAAACATTGCATAACAAATCAACTAAATCAAGGTTTCGAAAAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATAATTTTGTTTTTCAATTAAGCTTTTCAAAACACCCAGTATTAGCCTCTTGTACTTATTTAGGTCGCTGTGAATAATTATTGCTCATTATAAACTATTTTAAGCAATTTTTCCTCGAGTATTCAATAAAACTCACTCTTGGGTTTTCACCGACTTCATAAATTTATCAACCGCGATTTCCAAATACAACCCGTTTTCGAAAAATACCCTCATTAGTGTCGCATAGTACTCCGACTCGGAATTTGGTATGTAGAAACTGAAACTTTCACAACAAGAATTAAAAAAAAAATCTGAAAATTTCTCACAAATCTGAATAGGTCCTCCCTTTGCCTGATGTCATTTCTTGTTTTGCCAATTTTTTATTTCCATTAATTTCCAATCCGTTTTGAAATTGTTTCCATGCGTTTTGAATTCCTGGACTTTTGGAGGTTTCAAAAGTTTTGACGACATTTCGGCTGGCGAAAATGCCTGAAAATGAATTTTTGTGCAACATTTCTGATAGGTGAAACATTGCATAACAAATCAACTAAATCAAGGTTTCGAAAAATTCGAAAAATTCGAAAAACTCAAAAAAAAATTGTAATTTTCGAAAATCTCAAAAAAATCTTACCAACATCCAAATCCCAAAAAAGGTCCGATTCATCTAAAACAACACCAGTTGAATGGTGTACTGTAGAGAAATCGATTTCTTGCCAAATGTTAAAAATAGCATCATCTGCCATCAAAAAATAGCCCTGCACATTAGCTAATCCCATTTCTTTAGCCAAAGTTAAACAGTGGTATGCCGAATATCCCTTTCGCATTTCCGTCGGATTCATGTGTATAAAATTGAAAGGTTGGATGGTTGAGGTGTAATTATCGTGGTCCTTAACTTGGTCCGGATACCAGGACCCACAAAAAACGACAGCCGCAAAATATGGTTGATATAATCTTTGAATTATTCCATGACCGTAATTCCAGGGATAGTTATTGACCACTACTAGGACCTGAAAATTGAT</canonical>
            <polymorphic>AAATAATTTTGTTTTTCAATTAAGCTTTTCAAAACACCCAGTATTAGCCTCTTGTACTTATTTAGGTCGCTGTGAATAATTATTGCTCATTATAAACTATTTTAAGCAATTTTTCCTCGAGTATTCAATAAAACTCACTCTTGGGTTTTCACCGACTTCATAAATTTATCAACCGCGATTTCCAAATACAACCCGTTTTCGAAAAATACCCTCATTAGTGTCGCATAGTACTCCGACTCGGAATTTGGTATGTAGAAACTGAAACTTTCACAACAAGAATTAAAAAAAAAATCTGAAAATTTCTCACAAATCTGAATAGGTCCTCCCTTTGCCTGATGTCATTTCTTGTTTTGCCAATTTTTTATTTCCATTAATTTCCAATCCGTTTTGAAATTGTTTCCATGCGTTTTGAATTCCTGGACTTTTGGAGGTTTCAAAAGTTTTGACGACATTTCGGCTGGCGAAAATGCCTGAAAATGAATTTTTGTGCAACATTTCTSATAGGTGAAACATTGCATAACAAATCAACTAAATCAAGGTTTCGAAAAATTCGAAAAATTCGAAAAACTCAAAAAAAAATTGTAATTTTCGAAAATCTCAAAAAAATCTTACCAACATCCAAATCCCAAAAAAGGTCCGATTCATCTAAAACAACACCAGTTGAATGGTGTACTGTAGAGAAATCGATTTCTTGCCAAATGTTAAAAATAGCATCATCTGCCATCAAAAAATAGCCCTGCACATTAGCTAATCCCATTTCTTTAGCCAAAGTTAAACAGTGGTATGCCGAATATCCCTTTCGCATTTCCGTCGGATTCATGTGTATAAAATTGAAAGGTTGGATGGTTGAGGTGTAATTATCGTGGTCCTTAACTTGGTCCGGATACCAGGACCCACAAAAAACGACAGCCGCAAAATATGGTTGATATAATCTTTGAATTATTCCATGACCGTAATTCCAGGGATAGTTATTGACCACTACTAGGACCTGAAAATTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>234 187 186 175 139 54 19 6</canonical_bands>
                <polymorphic_bands>325 234 187 175 54 19 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCACAAATCTGAATAGGTC</pcr_primer_p1>
		<pcr_primer_p2>GAATTTTTCGAAACCTTGATT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCACAAATCTGAATAGGTCCTCCCTTTGCCTGATGTCATTTCTTGTTTTGCCAATTTTTTATTTCCATTAATTTCCAATCCGTTTTGAAATTGTTTCCATGCGTTTTGAATTCCTGGACTTTTGGAGGTTTCAAAAGTTTTGACGACATTTCGGCTGGCGAAAATGCCTGAAAATGAATTTTTGTGCAACATTTCTGATAGGTGAAACATTGCATAACAAATCAACTAAATCAAGGTTTCGAAAAATTC</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCACAAATCTGAATAGGTCCTCCCTTTGCCTGATGTCATTTCTTGTTTTGCCAATTTTTTATTTCCATTAATTTCCAATCCGTTTTGAAATTGTTTCCATGCGTTTTGAATTCCTGGACTTTTGGAGGTTTCAAAAGTTTTGACGACATTTCGGCTGGCGAAAATGCCTGAAAATGAATTTTTGTGCAACATTTCTSATAGGTGAAACATTGCATAACAAATCAACTAAATCAAGGTTTCGAAAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4462</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>413815</contig_pos>
        <strand>+</strand>
        <context>TTTTGAATTC[C/T]TGGACTTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCATTAATTTCCAATCCGTTTTGAAATTGTTTCCATGCGTTTTGAATTC</left_flank>
        <right_flank>TGGACTTTTGGAGGTTTCAAAAGTTTTGACGACATTTCGGCTGGCGAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCATCGTTTTTGAATACTTTTCGTCCCATTTTTCACGATCATCATTCCAAATATATACGGTTTTGGGAGATCTAAATATAAAAAATAATTTTGTTTTTCAATTAAGCTTTTCAAAACACCCAGTATTAGCCTCTTGTACTTATTTAGGTCGCTGTGAATAATTATTGCTCATTATAAACTATTTTAAGCAATTTTTCCTCGAGTATTCAATAAAACTCACTCTTGGGTTTTCACCGACTTCATAAATTTATCAACCGCGATTTCCAAATACAACCCGTTTTCGAAAAATACCCTCATTAGTGTCGCATAGTACTCCGACTCGGAATTTGGTATGTAGAAACTGAAACTTTCACAACAAGAATTAAAAAAAAAATCTGAAAATTTCTCACAAATCTGAATAGGTCCTCCCTTTGCCTGATGTCATTTCTTGTTTTGCCAATTTTTTATTTCCATTAATTTCCAATCCGTTTTGAAATTGTTTCCATGCGTTTTGAATTCCTGGACTTTTGGAGGTTTCAAAAGTTTTGACGACATTTCGGCTGGCGAAAATGCCTGAAAATGAATTTTTGTGCAACATTTCTGATAGGTGAAACATTGCATAACAAATCAACTAAATCAAGGTTTCGAAAAATTCGAAAAATTCGAAAAACTCAAAAAAAAATTGTAATTTTCGAAAATCTCAAAAAAATCTTACCAACATCCAAATCCCAAAAAAGGTCCGATTCATCTAAAACAACACCAGTTGAATGGTGTACTGTAGAGAAATCGATTTCTTGCCAAATGTTAAAAATAGCATCATCTGCCATCAAAAAATAGCCCTGCACATTAGCTAATCCCATTTCTTTAGCCAAAGTTAAACAGTGGTATGCCGAATATCCCTTTCGCATTTCCGTCGGATTCATGTGTATAAAATTGAAAGGTTGGATGGTTGAGGTGTAATTATCGTGGTCCTTAACTTGGTCCGGATACCAGGACCCACAAAAAACGACAGCCGCAAAA</canonical>
            <polymorphic>ATCATCGTTTTTGAATACTTTTCGTCCCATTTTTCACGATCATCATTCCAAATATATACGGTTTTGGGAGATCTAAATATAAAAAATAATTTTGTTTTTCAATTAAGCTTTTCAAAACACCCAGTATTAGCCTCTTGTACTTATTTAGGTCGCTGTGAATAATTATTGCTCATTATAAACTATTTTAAGCAATTTTTCCTCGAGTATTCAATAAAACTCACTCTTGGGTTTTCACCGACTTCATAAATTTATCAACCGCGATTTCCAAATACAACCCGTTTTCGAAAAATACCCTCATTAGTGTCGCATAGTACTCCGACTCGGAATTTGGTATGTAGAAACTGAAACTTTCACAACAAGAATTAAAAAAAAAATCTGAAAATTTCTCACAAATCTGAATAGGTCCTCCCTTTGCCTGATGTCATTTCTTGTTTTGCCAATTTTTTATTTCCATTAATTTCCAATCCGTTTTGAAATTGTTTCCATGCGTTTTGAATTCYTGGACTTTTGGAGGTTTCAAAAGTTTTGACGACATTTCGGCTGGCGAAAATGCCTGAAAATGAATTTTTGTGCAACATTTCTGATAGGTGAAACATTGCATAACAAATCAACTAAATCAAGGTTTCGAAAAATTCGAAAAATTCGAAAAACTCAAAAAAAAATTGTAATTTTCGAAAATCTCAAAAAAATCTTACCAACATCCAAATCCCAAAAAAGGTCCGATTCATCTAAAACAACACCAGTTGAATGGTGTACTGTAGAGAAATCGATTTCTTGCCAAATGTTAAAAATAGCATCATCTGCCATCAAAAAATAGCCCTGCACATTAGCTAATCCCATTTCTTTAGCCAAAGTTAAACAGTGGTATGCCGAATATCCCTTTCGCATTTCCGTCGGATTCATGTGTATAAAATTGAAAGGTTGGATGGTTGAGGTGTAATTATCGTGGTCCTTAACTTGGTCCGGATACCAGGACCCACAAAAAACGACAGCCGCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>500 471 29</canonical_bands>
                <polymorphic_bands>971 29</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>500 471 29</canonical_bands>
                <polymorphic_bands>971 29</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCACAAATCTGAATAGGTC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCGAAACCTTGATTTAGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCACAAATCTGAATAGGTCCTCCCTTTGCCTGATGTCATTTCTTGTTTTGCCAATTTTTTATTTCCATTAATTTCCAATCCGTTTTGAAATTGTTTCCATGCGTTTTGAATTCCTGGACTTTTGGAGGTTTCAAAAGTTTTGACGACATTTCGGCTGGCGAAAATGCCTGAAAATGAATTTTTGTGCAACATTTCTGATAGGTGAAACATTGCATAACAAATCAACTAAATCAAGGTTTCGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCACAAATCTGAATAGGTCCTCCCTTTGCCTGATGTCATTTCTTGTTTTGCCAATTTTTTATTTCCATTAATTTCCAATCCGTTTTGAAATTGTTTCCATGCGTTTTGAATTCYTGGACTTTTGGAGGTTTCAAAAGTTTTGACGACATTTCGGCTGGCGAAAATGCCTGAAAATGAATTTTTGTGCAACATTTCTGATAGGTGAAACATTGCATAACAAATCAACTAAATCAAGGTTTCGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4464</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>413669</contig_pos>
        <strand></strand>
        <context>GAAACTTTCA[C/A]MACAAGAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TCGCATAGTACTCCGACTCGGAATTTGGTATGTAGAAACTGAAACTTTCA</left_flank>
        <right_flank>AACAAGAATTAAAAAAAAAATCTGAAAATTTCTCACAAATCTGAATAGGT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACATCAGCCCAAATTTGTAAAATTGAGCGGCAGTATCTGGAAAAATTTCTTATTAAACAATTTTTTTTCGAAAAGAACATGTTTCACCTCGTCCGATTTTTTCCTGGTTGCTGGAATTGACTTAATTTAACTGGATGAAATCCAATCATCGTTTTTGAATACTTTTCGTCCCATTTTTCACGATCATCATTCCAAATATATACGGTTTTGGGAGATCTAAATATAAAAAATAATTTTGTTTTTCAATTAAGCTTTTCAAAACACCCAGTATTAGCCTCTTGTACTTATTTAGGTCGCTGTGAATAATTATTGCTCATTATAAACTATTTTAAGCAATTTTTCCTCGAGTATTCAATAAAACTCACTCTTGGGTTTTCACCGACTTCATAAATTTATCAACCGCGATTTCCAAATACAACCCGTTTTCGAAAAATACCCTCATTAGTGTCGCATAGTACTCCGACTCGGAATTTGGTATGTAGAAACTGAAACTTTCACAACAAGAATTAAAAAAAAAATCTGAAAATTTCTCACAAATCTGAATAGGTCCTCCCTTTGCCTGATGTCATTTCTTGTTTTGCCAATTTTTTATTTCCATTAATTTCCAATCCGTTTTGAAATTGTTTCCATGCGTTTTGAATTCCTGGACTTTTGGAGGTTTCAAAAGTTTTGACGACATTTCGGCTGGCGAAAATGCCTGAAAATGAATTTTTGTGCAACATTTCTGATAGGTGAAACATTGCATAACAAATCAACTAAATCAAGGTTTCGAAAAATTCGAAAAATTCGAAAAACTCAAAAAAAAATTGTAATTTTCGAAAATCTCAAAAAAATCTTACCAACATCCAAATCCCAAAAAAGGTCCGATTCATCTAAAACAACACCAGTTGAATGGTGTACTGTAGAGAAATCGATTTCTTGCCAAATGTTAAAAATAGCATCATCTGCCATCAAAAAATAGCCCTGCACATTAGCTAATCCCATTTCTTTAGCCAAAG</canonical>
            <polymorphic>TTACATCAGCCCAAATTTGTAAAATTGAGCGGCAGTATCTGGAAAAATTTCTTATTAAACAATTTTTTTTCGAAAAGAACATGTTTCACCTCGTCCGATTTTTTCCTGGTTGCTGGAATTGACTTAATTTAACTGGATGAAATCCAATCATCGTTTTTGAATACTTTTCGTCCCATTTTTCACGATCATCATTCCAAATATATACGGTTTTGGGAGATCTAAATATAAAAAATAATTTTGTTTTTCAATTAAGCTTTTCAAAACACCCAGTATTAGCCTCTTGTACTTATTTAGGTCGCTGTGAATAATTATTGCTCATTATAAACTATTTTAAGCAATTTTTCCTCGAGTATTCAATAAAACTCACTCTTGGGTTTTCACCGACTTCATAAATTTATCAACCGCGATTTCCAAATACAACCCGTTTTCGAAAAATACCCTCATTAGTGTCGCATAGTACTCCGACTCGGAATTTGGTATGTAGAAACTGAAACTTTCAMAACAAGAATTAAAAAAAAAATCTGAAAATTTCTCACAAATCTGAATAGGTCCTCCCTTTGCCTGATGTCATTTCTTGTTTTGCCAATTTTTTATTTCCATTAATTTCCAATCCGTTTTGAAATTGTTTCCATGCGTTTTGAATTCCTGGACTTTTGGAGGTTTCAAAAGTTTTGACGACATTTCGGCTGGCGAAAATGCCTGAAAATGAATTTTTGTGCAACATTTCTGATAGGTGAAACATTGCATAACAAATCAACTAAATCAAGGTTTCGAAAAATTCGAAAAATTCGAAAAACTCAAAAAAAAATTGTAATTTTCGAAAATCTCAAAAAAATCTTACCAACATCCAAATCCCAAAAAAGGTCCGATTCATCTAAAACAACACCAGTTGAATGGTGTACTGTAGAGAAATCGATTTCTTGCCAAATGTTAAAAATAGCATCATCTGCCATCAAAAAATAGCCCTGCACATTAGCTAATCCCATTTCTTTAGCCAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>183 149 94 88 83 71 69 63 50 38 36 30 18 14 14</canonical_bands>
                <polymorphic_bands>183 149 94 88 86 83 71 69 63 38 30 18 14 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCCTCGAGTATTCAATAAAAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTGGCAAAACAAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCCTCGAGTATTCAATAAAACTCACTCTTGGGTTTTCACCGACTTCATAAATTTATCAACCGCGATTTCCAAATACAACCCGTTTTCGAAAAATACCCTCATTAGTGTCGCATAGTACTCCGACTCGGAATTTGGTATGTAGAAACTGAAACTTTCACAACAAGAATTAAAAAAAAAATCTGAAAATTTCTCACAAATCTGAATAGGTCCTCCCTTTGCCTGATGTCATTTCTTGTTTTGCCAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCCTCGAGTATTCAATAAAACTCACTCTTGGGTTTTCACCGACTTCATAAATTTATCAACCGCGATTTCCAAATACAACCCGTTTTCGAAAAATACCCTCATTAGTGTCGCATAGTACTCCGACTCGGAATTTGGTATGTAGAAACTGAAACTTTCAMAACAAGAATTAAAAAAAAAATCTGAAAATTTCTCACAAATCTGAATAGGTCCTCCCTTTGCCTGATGTCATTTCTTGTTTTGCCAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4465</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>466261</contig_pos>
        <strand>+</strand>
        <context>TGACATATAC[C/T]TYTCACAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTGCATGTTGAGCACAATATGATTCCAATTCAAAAGTTGACATATAC</left_flank>
        <right_flank>TTTCACAGAAATTGAGATATTCCAGCGGAAACTCACATTTAGTCCAAACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGATTTGTTGAACATCTCCAAGGGCTAAAAAATGGAAATTTTCGAATTTTATGAAAATGAATTTTCAGACAGGACTTCAAATTTGACTACAATCTTATATTACTAACCATTAGTGTCCATTCCCATGAACAGTGTATAATTGAACACCGCACTTAATCCAAATGTGTGAATTGTCAACTTGTTTCCAGTGGCCACAATTTGATATCTAGCTGTTGCCAAGTTTCCCAAATATGAACTGTTTACAGAGTCACCATCATAAATTGCCGACTGTCGGAGTAGCGGATATTTATCGTCTTTCAAGGAGAATCCAACAAGAACCACGCGATTCGGTGAGGTGTAAGTGGTTATACACGGAGATGGAGATGATGCTGACGCTCGAGTGTCGGTTAGTTGATTGTTGACTTGACAGGCTCCCGGGTCTGAAAATGTTGATAAAATTATTAATACTATTTTGCATGTTGAGCACAATATGATTCCAATTCAAAAGTTGACATATACTTTTCACAGAAATTGAGATATTCCAGCGGAAACTCACATTTAGTCCAAACAACTTTGAAGGAGAATTCTCCACTGTCATCAGAGACCTTAAGGTTTACTTGGAATTGGGGACTCGTGAAGATGTATGGGTTTTGGTCTTGGTCCTCGATGCTGGAAATTTGTAATTAGTAATTTAAATTTATTTGAATTTATCTGAATCTGTGCGAATCCATTTGTATTCAAACACTCACAATTGTTCATAACCATTTGGATACAAGCAAGTGATTCCAGACTCTGACGCAGTTTTCTTATAGTAGGTTACTGTTGCAAACATTCCCTGGGGCACATTTATTTTCCAATTGCACGTCTGACCACCGGCGTACGTCGCGGGCTCCTGGGATTCTGTCCATCCTTCTGGGTAGTAGTATGGCTTAGTTAGATCTGCAGGTGGGTTGATCGTATGACTTCCAGTACAGGAATAACCGTCTGCGGAGGCTGAGGCCAAAAACGCAGAAAGCAGAA</canonical>
            <polymorphic>GTGATTTGTTGAACATCTCCAAGGGCTAAAAAATGGAAATTTTCGAATTTTATGAAAATGAATTTTCAGACAGGACTTCAAATTTGACTACAATCTTATATTACTAACCATTAGTGTCCATTCCCATGAACAGTGTATAATTGAACACCGCACTTAATCCAAATGTGTGAATTGTCAACTTGTTTCCAGTGGCCACAATTTGATATCTAGCTGTTGCCAAGTTTCCCAAATATGAACTGTTTACAGAGTCACCATCATAAATTGCCGACTGTCGGAGTAGCGGATATTTATCGTCTTTCAAGGAGAATCCAACAAGAACCACGCGATTCGGTGAGGTGTAAGTGGTTATACACGGAGATGGAGATGATGCTGACGCTCGAGTGTCGGTTAGTTGATTGTTGACTTGACAGGCTCCCGGGTCTGAAAATGTTGATAAAATTATTAATACTATTTTGCATGTTGAGCACAATATGATTCCAATTCAAAAGTTGACATATACYTTTCACAGAAATTGAGATATTCCAGCGGAAACTCACATTTAGTCCAAACAACTTTGAAGGAGAATTCTCCACTGTCATCAGAGACCTTAAGGTTTACTTGGAATTGGGGACTCGTGAAGATGTATGGGTTTTGGTCTTGGTCCTCGATGCTGGAAATTTGTAATTAGTAATTTAAATTTATTTGAATTTATCTGAATCTGTGCGAATCCATTTGTATTCAAACACTCACAATTGTTCATAACCATTTGGATACAAGCAAGTGATTCCAGACTCTGACGCAGTTTTCTTATAGTAGGTTACTGTTGCAAACATTCCCTGGGGCACATTTATTTTCCAATTGCACGTCTGACCACCGGCGTACGTCGCGGGCTCCTGGGATTCTGTCCATCCTTCTGGGTAGTAGTATGGCTTAGTTAGATCTGCAGGTGGGTTGATCGTATGACTTCCAGTACAGGAATAACCGTCTGCGGAGGCTGAGGCCAAAAACGCAGAAAGCAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAAGTGGTTATACACGGAGAT</pcr_primer_p1>
		<pcr_primer_p2>GTCTCTGATGACAGTGGAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTAAGTGGTTATACACGGAGATGGAGATGATGCTGACGCTCGAGTGTCGGTTAGTTGATTGTTGACTTGACAGGCTCCCGGGTCTGAAAATGTTGATAAAATTATTAATACTATTTTGCATGTTGAGCACAATATGATTCCAATTCAAAAGTTGACATATACTTTTCACAGAAATTGAGATATTCCAGCGGAAACTCACATTTAGTCCAAACAACTTTGAAGGAGAATTCTCCACTGTCATCAGAGAC</canonical_amplicon>
		<polymorphic_amplicon>TGTAAGTGGTTATACACGGAGATGGAGATGATGCTGACGCTCGAGTGTCGGTTAGTTGATTGTTGACTTGACAGGCTCCCGGGTCTGAAAATGTTGATAAAATTATTAATACTATTTTGCATGTTGAGCACAATATGATTCCAATTCAAAAGTTGACATATACYTTTCACAGAAATTGAGATATTCCAGCGGAAACTCACATTTAGTCCAAACAACTTTGAAGGAGAATTCTCCACTGTCATCAGAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4466</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>466263</contig_pos>
        <strand>+</strand>
        <context>ACATATACYT[C/T]TCACAGAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGCATGTTGAGCACAATATGATTCCAATTCAAAAGTTGACATATACTT</left_flank>
        <right_flank>TCACAGAAATTGAGATATTCCAGCGGAAACTCACATTTAGTCCAAACAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTGTTGAACATCTCCAAGGGCTAAAAAATGGAAATTTTCGAATTTTATGAAAATGAATTTTCAGACAGGACTTCAAATTTGACTACAATCTTATATTACTAACCATTAGTGTCCATTCCCATGAACAGTGTATAATTGAACACCGCACTTAATCCAAATGTGTGAATTGTCAACTTGTTTCCAGTGGCCACAATTTGATATCTAGCTGTTGCCAAGTTTCCCAAATATGAACTGTTTACAGAGTCACCATCATAAATTGCCGACTGTCGGAGTAGCGGATATTTATCGTCTTTCAAGGAGAATCCAACAAGAACCACGCGATTCGGTGAGGTGTAAGTGGTTATACACGGAGATGGAGATGATGCTGACGCTCGAGTGTCGGTTAGTTGATTGTTGACTTGACAGGCTCCCGGGTCTGAAAATGTTGATAAAATTATTAATACTATTTTGCATGTTGAGCACAATATGATTCCAATTCAAAAGTTGACATATACTTTTCACAGAAATTGAGATATTCCAGCGGAAACTCACATTTAGTCCAAACAACTTTGAAGGAGAATTCTCCACTGTCATCAGAGACCTTAAGGTTTACTTGGAATTGGGGACTCGTGAAGATGTATGGGTTTTGGTCTTGGTCCTCGATGCTGGAAATTTGTAATTAGTAATTTAAATTTATTTGAATTTATCTGAATCTGTGCGAATCCATTTGTATTCAAACACTCACAATTGTTCATAACCATTTGGATACAAGCAAGTGATTCCAGACTCTGACGCAGTTTTCTTATAGTAGGTTACTGTTGCAAACATTCCCTGGGGCACATTTATTTTCCAATTGCACGTCTGACCACCGGCGTACGTCGCGGGCTCCTGGGATTCTGTCCATCCTTCTGGGTAGTAGTATGGCTTAGTTAGATCTGCAGGTGGGTTGATCGTATGACTTCCAGTACAGGAATAACCGTCTGCGGAGGCTGAGGCCAAAAACGCAGAAAGCAGAACA</canonical>
            <polymorphic>GATTTGTTGAACATCTCCAAGGGCTAAAAAATGGAAATTTTCGAATTTTATGAAAATGAATTTTCAGACAGGACTTCAAATTTGACTACAATCTTATATTACTAACCATTAGTGTCCATTCCCATGAACAGTGTATAATTGAACACCGCACTTAATCCAAATGTGTGAATTGTCAACTTGTTTCCAGTGGCCACAATTTGATATCTAGCTGTTGCCAAGTTTCCCAAATATGAACTGTTTACAGAGTCACCATCATAAATTGCCGACTGTCGGAGTAGCGGATATTTATCGTCTTTCAAGGAGAATCCAACAAGAACCACGCGATTCGGTGAGGTGTAAGTGGTTATACACGGAGATGGAGATGATGCTGACGCTCGAGTGTCGGTTAGTTGATTGTTGACTTGACAGGCTCCCGGGTCTGAAAATGTTGATAAAATTATTAATACTATTTTGCATGTTGAGCACAATATGATTCCAATTCAAAAGTTGACATATACTTYTCACAGAAATTGAGATATTCCAGCGGAAACTCACATTTAGTCCAAACAACTTTGAAGGAGAATTCTCCACTGTCATCAGAGACCTTAAGGTTTACTTGGAATTGGGGACTCGTGAAGATGTATGGGTTTTGGTCTTGGTCCTCGATGCTGGAAATTTGTAATTAGTAATTTAAATTTATTTGAATTTATCTGAATCTGTGCGAATCCATTTGTATTCAAACACTCACAATTGTTCATAACCATTTGGATACAAGCAAGTGATTCCAGACTCTGACGCAGTTTTCTTATAGTAGGTTACTGTTGCAAACATTCCCTGGGGCACATTTATTTTCCAATTGCACGTCTGACCACCGGCGTACGTCGCGGGCTCCTGGGATTCTGTCCATCCTTCTGGGTAGTAGTATGGCTTAGTTAGATCTGCAGGTGGGTTGATCGTATGACTTCCAGTACAGGAATAACCGTCTGCGGAGGCTGAGGCCAAAAACGCAGAAAGCAGAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAAGTGGTTATACACGGAGAT</pcr_primer_p1>
		<pcr_primer_p2>GTCTCTGATGACAGTGGAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTAAGTGGTTATACACGGAGATGGAGATGATGCTGACGCTCGAGTGTCGGTTAGTTGATTGTTGACTTGACAGGCTCCCGGGTCTGAAAATGTTGATAAAATTATTAATACTATTTTGCATGTTGAGCACAATATGATTCCAATTCAAAAGTTGACATATACTTTTCACAGAAATTGAGATATTCCAGCGGAAACTCACATTTAGTCCAAACAACTTTGAAGGAGAATTCTCCACTGTCATCAGAGAC</canonical_amplicon>
		<polymorphic_amplicon>TGTAAGTGGTTATACACGGAGATGGAGATGATGCTGACGCTCGAGTGTCGGTTAGTTGATTGTTGACTTGACAGGCTCCCGGGTCTGAAAATGTTGATAAAATTATTAATACTATTTTGCATGTTGAGCACAATATGATTCCAATTCAAAAGTTGACATATACTTYTCACAGAAATTGAGATATTCCAGCGGAAACTCACATTTAGTCCAAACAACTTTGAAGGAGAATTCTCCACTGTCATCAGAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4467</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>466427</contig_pos>
        <strand>+</strand>
        <context>ATTTGTAATT[A/C]GTAATTTAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAGATGTATGGGTTTTGGTCTTGGTCCTCGATGCTGGAAATTTGTAATT</left_flank>
        <right_flank>GTAATTTAAATTTATTTGAATTTATCTGAATCTGTGCGAATCCATTTGTA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGAATTGTCAACTTGTTTCCAGTGGCCACAATTTGATATCTAGCTGTTGCCAAGTTTCCCAAATATGAACTGTTTACAGAGTCACCATCATAAATTGCCGACTGTCGGAGTAGCGGATATTTATCGTCTTTCAAGGAGAATCCAACAAGAACCACGCGATTCGGTGAGGTGTAAGTGGTTATACACGGAGATGGAGATGATGCTGACGCTCGAGTGTCGGTTAGTTGATTGTTGACTTGACAGGCTCCCGGGTCTGAAAATGTTGATAAAATTATTAATACTATTTTGCATGTTGAGCACAATATGATTCCAATTCAAAAGTTGACATATACTTTTCACAGAAATTGAGATATTCCAGCGGAAACTCACATTTAGTCCAAACAACTTTGAAGGAGAATTCTCCACTGTCATCAGAGACCTTAAGGTTTACTTGGAATTGGGGACTCGTGAAGATGTATGGGTTTTGGTCTTGGTCCTCGATGCTGGAAATTTGTAATTAGTAATTTAAATTTATTTGAATTTATCTGAATCTGTGCGAATCCATTTGTATTCAAACACTCACAATTGTTCATAACCATTTGGATACAAGCAAGTGATTCCAGACTCTGACGCAGTTTTCTTATAGTAGGTTACTGTTGCAAACATTCCCTGGGGCACATTTATTTTCCAATTGCACGTCTGACCACCGGCGTACGTCGCGGGCTCCTGGGATTCTGTCCATCCTTCTGGGTAGTAGTATGGCTTAGTTAGATCTGCAGGTGGGTTGATCGTATGACTTCCAGTACAGGAATAACCGTCTGCGGAGGCTGAGGCCAAAAACGCAGAAAGCAGAACAATGAAAATCGTCATTTCATCGATAATTTTTTGGGTAGCTCGCTTTTTCTTTTATACTCTTATCGGTTCGGGAAATCATTATTTGAATACAAAAGTCCCTTTTGATAAGAATATTTGATGTCATCGTGGTTTTTATGGTAAGGCGTTGTCGCTAAATATTACACC</canonical>
            <polymorphic>GTGAATTGTCAACTTGTTTCCAGTGGCCACAATTTGATATCTAGCTGTTGCCAAGTTTCCCAAATATGAACTGTTTACAGAGTCACCATCATAAATTGCCGACTGTCGGAGTAGCGGATATTTATCGTCTTTCAAGGAGAATCCAACAAGAACCACGCGATTCGGTGAGGTGTAAGTGGTTATACACGGAGATGGAGATGATGCTGACGCTCGAGTGTCGGTTAGTTGATTGTTGACTTGACAGGCTCCCGGGTCTGAAAATGTTGATAAAATTATTAATACTATTTTGCATGTTGAGCACAATATGATTCCAATTCAAAAGTTGACATATACTTTTCACAGAAATTGAGATATTCCAGCGGAAACTCACATTTAGTCCAAACAACTTTGAAGGAGAATTCTCCACTGTCATCAGAGACCTTAAGGTTTACTTGGAATTGGGGACTCGTGAAGATGTATGGGTTTTGGTCTTGGTCCTCGATGCTGGAAATTTGTAATTMGTAATTTAAATTTATTTGAATTTATCTGAATCTGTGCGAATCCATTTGTATTCAAACACTCACAATTGTTCATAACCATTTGGATACAAGCAAGTGATTCCAGACTCTGACGCAGTTTTCTTATAGTAGGTTACTGTTGCAAACATTCCCTGGGGCACATTTATTTTCCAATTGCACGTCTGACCACCGGCGTACGTCGCGGGCTCCTGGGATTCTGTCCATCCTTCTGGGTAGTAGTATGGCTTAGTTAGATCTGCAGGTGGGTTGATCGTATGACTTCCAGTACAGGAATAACCGTCTGCGGAGGCTGAGGCCAAAAACGCAGAAAGCAGAACAATGAAAATCGTCATTTCATCGATAATTTTTTGGGTAGCTCGCTTTTTCTTTTATACTCTTATCGGTTCGGGAAATCATTATTTGAATACAAAAGTCCCTTTTGATAAGAATATTTGATGTCATCGTGGTTTTTATGGTAAGGCGTTGTCGCTAAATATTACACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTCACATTTAGTCCAAACAA</pcr_primer_p1>
		<pcr_primer_p2>GTCAGAGTCTGGAATCACTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAACTCACATTTAGTCCAAACAACTTTGAAGGAGAATTCTCCACTGTCATCAGAGACCTTAAGGTTTACTTGGAATTGGGGACTCGTGAAGATGTATGGGTTTTGGTCTTGGTCCTCGATGCTGGAAATTTGTAATTAGTAATTTAAATTTATTTGAATTTATCTGAATCTGTGCGAATCCATTTGTATTCAAACACTCACAATTGTTCATAACCATTTGGATACAAGCAAGTGATTCCAGACTCTGAC</canonical_amplicon>
		<polymorphic_amplicon>AAACTCACATTTAGTCCAAACAACTTTGAAGGAGAATTCTCCACTGTCATCAGAGACCTTAAGGTTTACTTGGAATTGGGGACTCGTGAAGATGTATGGGTTTTGGTCTTGGTCCTCGATGCTGGAAATTTGTAATTMGTAATTTAAATTTATTTGAATTTATCTGAATCTGTGCGAATCCATTTGTATTCAAACACTCACAATTGTTCATAACCATTTGGATACAAGCAAGTGATTCCAGACTCTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4468</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>469905</contig_pos>
        <strand></strand>
        <context>ATAGTTAACT[T/A]AAAAATTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTGACGAGGTGTTGTGGTTCCCTTGTAAGACTGGGATTTGATAGTTAACT</left_flank>
        <right_flank>AAAAATTTTCACATTTGGAGAAAGTCATGAACAATCAAAAACATTTTTAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTGCTTATCCTATAGCAACACATTCTACGTCACCTTGCTCAAAAGCAAAGAGTATAGAGATCAATTTTGTAGTTTGTGGTGTCTACGAAAATCCACGTCTTCTTGGTGAATGTTCTAATTGTAAGTTTTTATTGATCCAAAAGGATCCAATAACGTCGCAAAATCAGGCAAAAAAGAAAACAAAAGAAAAAACCACAAGAGGGAACGAACTAACGCTCCGTGCCCACTGGCGCCAGCACACATCCCCGACACCACACAGGTGATTCGTGATTAACCAATTACAGAGATAGAGAAAATCGACTTTGAACATCGCTATTTTTGCACTGAAGATGCGATTTTTGGTACTGAAACTGATATAACTCGGCTGAAACAGCGTGTTCTAAAAATTTTAGGGGTATCTAGATAGGCTATCCTTGACATATCCTGAAATTTTCATCACAATCTGAATTGACGAGGTGTTGTGGTTCCCTTGTAAGACTGGGATTTGATAGTTAACTTAAAAATTTTCACATTTGGAGAAAGTCATGAACAATCAAAAACATTTTTATTTTATTTGAAAATCAAAAGGTCAAAAATTGAAAGATAAAAAATTAGAAGATCAAAAAAAGGTTTTTTTTTCCAAAAATTCGGAACTCCAGAGATTACCAAGTCTCATTTCTCTTCTGTAGCTTTATTTCCGGGCTAATGTATTTTTGTGACATCGATTGAGAATTCACAATTGCAATTCCAGAAGACGTGGATTTTCGTAGACACCACAAACTACAAAATTGATCTCTATACTCTTTGCTTTTGAGCAAGGTGACGTAGAATGTGTTGCTATAGGATAAGCAGAGAAAGAACACCTGAAAACTTTTTAAAATCATAATTTAATTTTTTCAGTGAATAATAGACAACTTTATAGTACTGGGAAAGTAGTCTATAAGTTTAAATTTGTCTGAAAATTTTAGACACTGGACTAAAAAAACGTTCACAAAATTGAAGATCTTGTTTTGTTTAGT</canonical>
            <polymorphic>CTCTGCTTATCCTATAGCAACACATTCTACGTCACCTTGCTCAAAAGCAAAGAGTATAGAGATCAATTTTGTAGTTTGTGGTGTCTACGAAAATCCACGTCTTCTTGGTGAATGTTCTAATTGTAAGTTTTTATTGATCCAAAAGGATCCAATAACGTCGCAAAATCAGGCAAAAAAGAAAACAAAAGAAAAAACCACAAGAGGGAACGAACTAACGCTCCGTGCCCACTGGCGCCAGCACACATCCCCGACACCACACAGGTGATTCGTGATTAACCAATTACAGAGATAGAGAAAATCGACTTTGAACATCGCTATTTTTGCACTGAAGATGCGATTTTTGGTACTGAAACTGATATAACTCGGCTGAAACAGCGTGTTCTAAAAATTTTAGGGGTATCTAGATAGGCTATCCTTGACATATCCTGAAATTTTCATCACAATCTGAATTGACGAGGTGTTGTGGTTCCCTTGTAAGACTGGGATTTGATAGTTAACTWAAAAATTTTCACATTTGGAGAAAGTCATGAACAATCAAAAACATTTTTATTTTATTTGAAAATCAAAAGGTCAAAAATTGAAAGATAAAAAATTAGAAGATCAAAAAAAGGTTTTTTTTTCCAAAAATTCGGAACTCCAGAGATTACCAAGTCTCATTTCTCTTCTGTAGCTTTATTTCCGGGCTAATGTATTTTTGTGACATCGATTGAGAATTCACAATTGCAATTCCAGAAGACGTGGATTTTCGTAGACACCACAAACTACAAAATTGATCTCTATACTCTTTGCTTTTGAGCAAGGTGACGTAGAATGTGTTGCTATAGGATAAGCAGAGAAAGAACACCTGAAAACTTTTTAAAATCATAATTTAATTTTTTCAGTGAATAATAGACAACTTTATAGTACTGGGAAAGTAGTCTATAAGTTTAAATTTGTCTGAAAATTTTAGACACTGGACTAAAAAAACGTTCACAAAATTGAAGATCTTGTTTTGTTTAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>357 273 221 73 58 13 5</canonical_bands>
                <polymorphic_bands>362 273 221 73 58 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATTTTCATCACAATCTGAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAGCTACAGAAGAGAAATGAGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAATTTTCATCACAATCTGAATTGACGAGGTGTTGTGGTTCCCTTGTAAGACTGGGATTTGATAGTTAACTTAAAAATTTTCACATTTGGAGAAAGTCATGAACAATCAAAAACATTTTTATTTTATTTGAAAATCAAAAGGTCAAAAATTGAAAGATAAAAAATTAGAAGATCAAAAAAAGGTTTTTTTTTCCAAAAATTCGGAACTCCAGAGATTACCAAGTCTCATTTCTCTTCTGTAGCTTT</canonical_amplicon>
		<polymorphic_amplicon>GAAATTTTCATCACAATCTGAATTGACGAGGTGTTGTGGTTCCCTTGTAAGACTGGGATTTGATAGTTAACTWAAAAATTTTCACATTTGGAGAAAGTCATGAACAATCAAAAACATTTTTATTTTATTTGAAAATCAAAAGGTCAAAAATTGAAAGATAAAAAATTAGAAGATCAAAAAAAGGTTTTTTTTTCCAAAAATTCGGAACTCCAGAGATTACCAAGTCTCATTTCTCTTCTGTAGCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4471</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>470037</contig_pos>
        <strand></strand>
        <context>CAAAAATTCG[G/A]AACTCCAGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAGATAAAAAATTAGAAGATCAAAAAAAGGTTTTTTTTTCCAAAAATTCG</left_flank>
        <right_flank>AACTCCAGAGATTACCAAGTCTCATTTCTCTTCTGTAGCTTTATTTCCGG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGATCCAAAAGGATCCAATAACGTCGCAAAATCAGGCAAAAAAGAAAACAAAAGAAAAAACCACAAGAGGGAACGAACTAACGCTCCGTGCCCACTGGCGCCAGCACACATCCCCGACACCACACAGGTGATTCGTGATTAACCAATTACAGAGATAGAGAAAATCGACTTTGAACATCGCTATTTTTGCACTGAAGATGCGATTTTTGGTACTGAAACTGATATAACTCGGCTGAAACAGCGTGTTCTAAAAATTTTAGGGGTATCTAGATAGGCTATCCTTGACATATCCTGAAATTTTCATCACAATCTGAATTGACGAGGTGTTGTGGTTCCCTTGTAAGACTGGGATTTGATAGTTAACTTAAAAATTTTCACATTTGGAGAAAGTCATGAACAATCAAAAACATTTTTATTTTATTTGAAAATCAAAAGGTCAAAAATTGAAAGATAAAAAATTAGAAGATCAAAAAAAGGTTTTTTTTTCCAAAAATTCGGAACTCCAGAGATTACCAAGTCTCATTTCTCTTCTGTAGCTTTATTTCCGGGCTAATGTATTTTTGTGACATCGATTGAGAATTCACAATTGCAATTCCAGAAGACGTGGATTTTCGTAGACACCACAAACTACAAAATTGATCTCTATACTCTTTGCTTTTGAGCAAGGTGACGTAGAATGTGTTGCTATAGGATAAGCAGAGAAAGAACACCTGAAAACTTTTTAAAATCATAATTTAATTTTTTCAGTGAATAATAGACAACTTTATAGTACTGGGAAAGTAGTCTATAAGTTTAAATTTGTCTGAAAATTTTAGACACTGGACTAAAAAAACGTTCACAAAATTGAAGATCTTGTTTTGTTTAGTTTACTCTGATTTCTTCAGACAAGTCGAAAACTTATTTATATTACTACAATTGAACATTCGCGAGCAACCTGCGTATCATCGCGACTGGCCCTATAAAAGGACAATAAATGACCAATCGCGAAAAAATTCTTG</canonical>
            <polymorphic>ATTGATCCAAAAGGATCCAATAACGTCGCAAAATCAGGCAAAAAAGAAAACAAAAGAAAAAACCACAAGAGGGAACGAACTAACGCTCCGTGCCCACTGGCGCCAGCACACATCCCCGACACCACACAGGTGATTCGTGATTAACCAATTACAGAGATAGAGAAAATCGACTTTGAACATCGCTATTTTTGCACTGAAGATGCGATTTTTGGTACTGAAACTGATATAACTCGGCTGAAACAGCGTGTTCTAAAAATTTTAGGGGTATCTAGATAGGCTATCCTTGACATATCCTGAAATTTTCATCACAATCTGAATTGACGAGGTGTTGTGGTTCCCTTGTAAGACTGGGATTTGATAGTTAACTTAAAAATTTTCACATTTGGAGAAAGTCATGAACAATCAAAAACATTTTTATTTTATTTGAAAATCAAAAGGTCAAAAATTGAAAGATAAAAAATTAGAAGATCAAAAAAAGGTTTTTTTTTCCAAAAATTCGRAACTCCAGAGATTACCAAGTCTCATTTCTCTTCTGTAGCTTTATTTCCGGGCTAATGTATTTTTGTGACATCGATTGAGAATTCACAATTGCAATTCCAGAAGACGTGGATTTTCGTAGACACCACAAACTACAAAATTGATCTCTATACTCTTTGCTTTTGAGCAAGGTGACGTAGAATGTGTTGCTATAGGATAAGCAGAGAAAGAACACCTGAAAACTTTTTAAAATCATAATTTAATTTTTTCAGTGAATAATAGACAACTTTATAGTACTGGGAAAGTAGTCTATAAGTTTAAATTTGTCTGAAAATTTTAGACACTGGACTAAAAAAACGTTCACAAAATTGAAGATCTTGTTTTGTTTAGTTTACTCTGATTTCTTCAGACAAGTCGAAAACTTATTTATATTACTACAATTGAACATTCGCGAGCAACCTGCGTATCATCGCGACTGGCCCTATAAAAGGACAATAAATGACCAATCGCGAAAAAATTCTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>314 307 185 115 69 10</canonical_bands>
                <polymorphic_bands>492 314 115 69 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTATTTGAAAATCAAAAGGTCA</pcr_primer_p1>
		<pcr_primer_p2>TTGCTCAAAAGCAAAGAGTATAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTATTTGAAAATCAAAAGGTCAAAAATTGAAAGATAAAAAATTAGAAGATCAAAAAAAGGTTTTTTTTTCCAAAAATTCGGAACTCCAGAGATTACCAAGTCTCATTTCTCTTCTGTAGCTTTATTTCCGGGCTAATGTATTTTTGTGACATCGATTGAGAATTCACAATTGCAATTCCAGAAGACGTGGATTTTCGTAGACACCACAAACTACAAAATTGATCTCTATACTCTTTGCTTTTGAGCAA</canonical_amplicon>
		<polymorphic_amplicon>TTTATTTGAAAATCAAAAGGTCAAAAATTGAAAGATAAAAAATTAGAAGATCAAAAAAAGGTTTTTTTTTCCAAAAATTCGRAACTCCAGAGATTACCAAGTCTCATTTCTCTTCTGTAGCTTTATTTCCGGGCTAATGTATTTTTGTGACATCGATTGAGAATTCACAATTGCAATTCCAGAAGACGTGGATTTTCGTAGACACCACAAACTACAAAATTGATCTCTATACTCTTTGCTTTTGAGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4472</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>470109</contig_pos>
        <strand></strand>
        <context>TTTGTGACAT[C/T]GATTGAGAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATTTCTCTTCTGTAGCTTTATTTCCGGGCTAATGTATTTTTGTGACAT</left_flank>
        <right_flank>GATTGAGAATTCACAATTGCAATTCCAGAAGACGTGGATTTTCGTAGACA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACGAACTAACGCTCCGTGCCCACTGGCGCCAGCACACATCCCCGACACCACACAGGTGATTCGTGATTAACCAATTACAGAGATAGAGAAAATCGACTTTGAACATCGCTATTTTTGCACTGAAGATGCGATTTTTGGTACTGAAACTGATATAACTCGGCTGAAACAGCGTGTTCTAAAAATTTTAGGGGTATCTAGATAGGCTATCCTTGACATATCCTGAAATTTTCATCACAATCTGAATTGACGAGGTGTTGTGGTTCCCTTGTAAGACTGGGATTTGATAGTTAACTTAAAAATTTTCACATTTGGAGAAAGTCATGAACAATCAAAAACATTTTTATTTTATTTGAAAATCAAAAGGTCAAAAATTGAAAGATAAAAAATTAGAAGATCAAAAAAAGGTTTTTTTTTCCAAAAATTCGGAACTCCAGAGATTACCAAGTCTCATTTCTCTTCTGTAGCTTTATTTCCGGGCTAATGTATTTTTGTGACATCGATTGAGAATTCACAATTGCAATTCCAGAAGACGTGGATTTTCGTAGACACCACAAACTACAAAATTGATCTCTATACTCTTTGCTTTTGAGCAAGGTGACGTAGAATGTGTTGCTATAGGATAAGCAGAGAAAGAACACCTGAAAACTTTTTAAAATCATAATTTAATTTTTTCAGTGAATAATAGACAACTTTATAGTACTGGGAAAGTAGTCTATAAGTTTAAATTTGTCTGAAAATTTTAGACACTGGACTAAAAAAACGTTCACAAAATTGAAGATCTTGTTTTGTTTAGTTTACTCTGATTTCTTCAGACAAGTCGAAAACTTATTTATATTACTACAATTGAACATTCGCGAGCAACCTGCGTATCATCGCGACTGGCCCTATAAAAGGACAATAAATGACCAATCGCGAAAAAATTCTTGTTTTCTATTTTGCGGACTTCCTTTCCCTATTTTAGGTATTTTACTTTGTTTTTCGCCGTTTTCGATGCAGTT</canonical>
            <polymorphic>GAACGAACTAACGCTCCGTGCCCACTGGCGCCAGCACACATCCCCGACACCACACAGGTGATTCGTGATTAACCAATTACAGAGATAGAGAAAATCGACTTTGAACATCGCTATTTTTGCACTGAAGATGCGATTTTTGGTACTGAAACTGATATAACTCGGCTGAAACAGCGTGTTCTAAAAATTTTAGGGGTATCTAGATAGGCTATCCTTGACATATCCTGAAATTTTCATCACAATCTGAATTGACGAGGTGTTGTGGTTCCCTTGTAAGACTGGGATTTGATAGTTAACTTAAAAATTTTCACATTTGGAGAAAGTCATGAACAATCAAAAACATTTTTATTTTATTTGAAAATCAAAAGGTCAAAAATTGAAAGATAAAAAATTAGAAGATCAAAAAAAGGTTTTTTTTTCCAAAAATTCGGAACTCCAGAGATTACCAAGTCTCATTTCTCTTCTGTAGCTTTATTTCCGGGCTAATGTATTTTTGTGACATYGATTGAGAATTCACAATTGCAATTCCAGAAGACGTGGATTTTCGTAGACACCACAAACTACAAAATTGATCTCTATACTCTTTGCTTTTGAGCAAGGTGACGTAGAATGTGTTGCTATAGGATAAGCAGAGAAAGAACACCTGAAAACTTTTTAAAATCATAATTTAATTTTTTCAGTGAATAATAGACAACTTTATAGTACTGGGAAAGTAGTCTATAAGTTTAAATTTGTCTGAAAATTTTAGACACTGGACTAAAAAAACGTTCACAAAATTGAAGATCTTGTTTTGTTTAGTTTACTCTGATTTCTTCAGACAAGTCGAAAACTTATTTATATTACTACAATTGAACATTCGCGAGCAACCTGCGTATCATCGCGACTGGCCCTATAAAAGGACAATAAATGACCAATCGCGAAAAAATTCTTGTTTTCTATTTTGCGGACTTCCTTTCCCTATTTTAGGTATTTTACTTTGTTTTTCGCCGTTTTCGATGCAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>404 321 170 96 9</canonical_bands>
                <polymorphic_bands>725 170 96 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTATTTGAAAATCAAAAGGTCA</pcr_primer_p1>
		<pcr_primer_p2>TTGCTCAAAAGCAAAGAGTATAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTATTTGAAAATCAAAAGGTCAAAAATTGAAAGATAAAAAATTAGAAGATCAAAAAAAGGTTTTTTTTTCCAAAAATTCGGAACTCCAGAGATTACCAAGTCTCATTTCTCTTCTGTAGCTTTATTTCCGGGCTAATGTATTTTTGTGACATCGATTGAGAATTCACAATTGCAATTCCAGAAGACGTGGATTTTCGTAGACACCACAAACTACAAAATTGATCTCTATACTCTTTGCTTTTGAGCAA</canonical_amplicon>
		<polymorphic_amplicon>TTTATTTGAAAATCAAAAGGTCAAAAATTGAAAGATAAAAAATTAGAAGATCAAAAAAAGGTTTTTTTTTCCAAAAATTCGGAACTCCAGAGATTACCAAGTCTCATTTCTCTTCTGTAGCTTTATTTCCGGGCTAATGTATTTTTGTGACATYGATTGAGAATTCACAATTGCAATTCCAGAAGACGTGGATTTTCGTAGACACCACAAACTACAAAATTGATCTCTATACTCTTTGCTTTTGAGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4473</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>470359</contig_pos>
        <strand></strand>
        <context>TTTTAGACAC[T/C]GGACTAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TACTGGGAAAGTAGTCTATAAGTTTAAATTTGTCTGAAAATTTTAGACAC</left_flank>
        <right_flank>GGACTAAAAAAACGTTCACAAAATTGAAGATCTTGTTTTGTTTAGTTTAC</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGTGTTGTGGTTCCCTTGTAAGACTGGGATTTGATAGTTAACTTAAAAATTTTCACATTTGGAGAAAGTCATGAACAATCAAAAACATTTTTATTTTATTTGAAAATCAAAAGGTCAAAAATTGAAAGATAAAAAATTAGAAGATCAAAAAAAGGTTTTTTTTTCCAAAAATTCGGAACTCCAGAGATTACCAAGTCTCATTTCTCTTCTGTAGCTTTATTTCCGGGCTAATGTATTTTTGTGACATCGATTGAGAATTCACAATTGCAATTCCAGAAGACGTGGATTTTCGTAGACACCACAAACTACAAAATTGATCTCTATACTCTTTGCTTTTGAGCAAGGTGACGTAGAATGTGTTGCTATAGGATAAGCAGAGAAAGAACACCTGAAAACTTTTTAAAATCATAATTTAATTTTTTCAGTGAATAATAGACAACTTTATAGTACTGGGAAAGTAGTCTATAAGTTTAAATTTGTCTGAAAATTTTAGACACTGGACTAAAAAAACGTTCACAAAATTGAAGATCTTGTTTTGTTTAGTTTACTCTGATTTCTTCAGACAAGTCGAAAACTTATTTATATTACTACAATTGAACATTCGCGAGCAACCTGCGTATCATCGCGACTGGCCCTATAAAAGGACAATAAATGACCAATCGCGAAAAAATTCTTGTTTTCTATTTTGCGGACTTCCTTTCCCTATTTTAGGTATTTTACTTTGTTTTTCGCCGTTTTCGATGCAGTTTTTGTCCGTAAATCATTGTTAAACACATGAAAATATACTAGAATACTGTATAAGCATGTATTTCTCGTTTTTATTTTCAGAAAAAGAGGAAAATTGGCCGAAAACCAGAAGTTGGAAATTAGAAGTGGGAACTTCTAAAAAATCTAGAGATGAAAGTGTTACTTAACTGTATAAATGTAAGAATCGACCAGAAATTCCAGATTTTCAATCTAATTATTACAGGGAGCCGGAAAGTCCTAATTTTCCCGGC</canonical>
            <polymorphic>GAGGTGTTGTGGTTCCCTTGTAAGACTGGGATTTGATAGTTAACTTAAAAATTTTCACATTTGGAGAAAGTCATGAACAATCAAAAACATTTTTATTTTATTTGAAAATCAAAAGGTCAAAAATTGAAAGATAAAAAATTAGAAGATCAAAAAAAGGTTTTTTTTTCCAAAAATTCGGAACTCCAGAGATTACCAAGTCTCATTTCTCTTCTGTAGCTTTATTTCCGGGCTAATGTATTTTTGTGACATCGATTGAGAATTCACAATTGCAATTCCAGAAGACGTGGATTTTCGTAGACACCACAAACTACAAAATTGATCTCTATACTCTTTGCTTTTGAGCAAGGTGACGTAGAATGTGTTGCTATAGGATAAGCAGAGAAAGAACACCTGAAAACTTTTTAAAATCATAATTTAATTTTTTCAGTGAATAATAGACAACTTTATAGTACTGGGAAAGTAGTCTATAAGTTTAAATTTGTCTGAAAATTTTAGACACYGGACTAAAAAAACGTTCACAAAATTGAAGATCTTGTTTTGTTTAGTTTACTCTGATTTCTTCAGACAAGTCGAAAACTTATTTATATTACTACAATTGAACATTCGCGAGCAACCTGCGTATCATCGCGACTGGCCCTATAAAAGGACAATAAATGACCAATCGCGAAAAAATTCTTGTTTTCTATTTTGCGGACTTCCTTTCCCTATTTTAGGTATTTTACTTTGTTTTTCGCCGTTTTCGATGCAGTTTTTGTCCGTAAATCATTGTTAAACACATGAAAATATACTAGAATACTGTATAAGCATGTATTTCTCGTTTTTATTTTCAGAAAAAGAGGAAAATTGGCCGAAAACCAGAAGTTGGAAATTAGAAGTGGGAACTTCTAAAAAATCTAGAGATGAAAGTGTTACTTAACTGTATAAATGTAAGAATCGACCAGAAATTCCAGATTTTCAATCTAATTATTACAGGGAGCCGGAAAGTCCTAATTTTCCCGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTTGCTATAGGATAAGCAGAG</pcr_primer_p1>
		<pcr_primer_p2>CGCGAATGTTCAATTGTAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGTTGCTATAGGATAAGCAGAGAAAGAACACCTGAAAACTTTTTAAAATCATAATTTAATTTTTTCAGTGAATAATAGACAACTTTATAGTACTGGGAAAGTAGTCTATAAGTTTAAATTTGTCTGAAAATTTTAGACACTGGACTAAAAAAACGTTCACAAAATTGAAGATCTTGTTTTGTTTAGTTTACTCTGATTTCTTCAGACAAGTCGAAAACTTATTTATATTACTACAATTGAACATTCGCG</canonical_amplicon>
		<polymorphic_amplicon>GTGTTGCTATAGGATAAGCAGAGAAAGAACACCTGAAAACTTTTTAAAATCATAATTTAATTTTTTCAGTGAATAATAGACAACTTTATAGTACTGGGAAAGTAGTCTATAAGTTTAAATTTGTCTGAAAATTTTAGACACYGGACTAAAAAAACGTTCACAAAATTGAAGATCTTGTTTTGTTTAGTTTACTCTGATTTCTTCAGACAAGTCGAAAACTTATTTATATTACTACAATTGAACATTCGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4474</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>492860</contig_pos>
        <strand>+</strand>
        <context>TTAATTTCTT[G/T]CTTTTGCCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTAATACATGTTTTACAGTATTTATGTTTTTTGGCAATTCTTAATTTCTT</left_flank>
        <right_flank>CTTTTGCCCGATTTTTTTGGCTATGCCTAATTTTTTAGGTTTTACCTAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAATATGCCTAATTTTTTTGGTTATACCGTAAAATCTGTATAAGAAGGCACTGGTACTTCTATTTTTCCAAGGCAGTTTTAGAGGGCTCTTCTATGACAGGGTTCCTTCAATTAGAGCCCTTCTATTTTTCCGACCATTTTTTCCGAAAATTTTTCATCAAAAAATTCGACGAATTTCCATTCAAAATTCATGAAAATCTATCAATTTCACCAAAATTAAGCAGGATTTTCACCGAAAAATAGAGTTTCAACAAATATCTTGTAAATTGTGGAATTCCCGGAATATTTTTCACGGAAAACGTACTGAAATTCTTCAATTTCAAGACATACTTTGAAGCGGGTCCTTCGTATTACGGGGGCTCTTCTATTACAGGGGCACTTCTGTTTTTCCAAACTCTCTCTCTGAGGGTCCTTCTATCAACAGAGCCCTTCTATTAAAGGGGACCTTCTAATACATGTTTTACAGTATTTATGTTTTTTGGCAATTCTTAATTTCTTTCTTTTGCCCGATTTTTTTGGCTATGCCTAATTTTTTAGGTTTTACCTAACTTTTTTTTTGGTTATGCTCAATTTTTGGCTATGGCCAATTTTCTGGCCGTGTTTAGTCTTTTTTATTATCCTTTTTTGGGTGAATACTCTTTTGGGTCAAAAAGCATAGAAAATCAAGTAGAACCGTGCTTGTCATTTTCTGTAGTGTTTGTTACCGCTCTTTCTATCGAACAAGCCGAATATTTCTCTCTCTTCAAAACCGGTACCATATCCTCTTGAAACTACAAATTCCAATTTTCATAGCTCAGTTATCTCTTCTGACAGTACTTTTCCGTGTACTTTTCTTATCCCATTCTGGACTCCCAGACCAGAATCTTTCTTCTCCTATTTTCTTCTATTCCAAAGACAAAACTATCTTCTTTAAAAAGCGCTCATATTCTTATTCCCCATTCGCTCTCCCATTCTCTTTTCAAAGTTCGAACAACTTTTTGCTCCTCCTCCCCACCTCTT</canonical>
            <polymorphic>TGAATATGCCTAATTTTTTTGGTTATACCGTAAAATCTGTATAAGAAGGCACTGGTACTTCTATTTTTCCAAGGCAGTTTTAGAGGGCTCTTCTATGACAGGGTTCCTTCAATTAGAGCCCTTCTATTTTTCCGACCATTTTTTCCGAAAATTTTTCATCAAAAAATTCGACGAATTTCCATTCAAAATTCATGAAAATCTATCAATTTCACCAAAATTAAGCAGGATTTTCACCGAAAAATAGAGTTTCAACAAATATCTTGTAAATTGTGGAATTCCCGGAATATTTTTCACGGAAAACGTACTGAAATTCTTCAATTTCAAGACATACTTTGAAGCGGGTCCTTCGTATTACGGGGGCTCTTCTATTACAGGGGCACTTCTGTTTTTCCAAACTCTCTCTCTGAGGGTCCTTCTATCAACAGAGCCCTTCTATTAAAGGGGACCTTCTAATACATGTTTTACAGTATTTATGTTTTTTGGCAATTCTTAATTTCTTKCTTTTGCCCGATTTTTTTGGCTATGCCTAATTTTTTAGGTTTTACCTAACTTTTTTTTTGGTTATGCTCAATTTTTGGCTATGGCCAATTTTCTGGCCGTGTTTAGTCTTTTTTATTATCCTTTTTTGGGTGAATACTCTTTTGGGTCAAAAAGCATAGAAAATCAAGTAGAACCGTGCTTGTCATTTTCTGTAGTGTTTGTTACCGCTCTTTCTATCGAACAAGCCGAATATTTCTCTCTCTTCAAAACCGGTACCATATCCTCTTGAAACTACAAATTCCAATTTTCATAGCTCAGTTATCTCTTCTGACAGTACTTTTCCGTGTACTTTTCTTATCCCATTCTGGACTCCCAGACCAGAATCTTTCTTCTCCTATTTTCTTCTATTCCAAAGACAAAACTATCTTCTTTAAAAAGCGCTCATATTCTTATTCCCCATTCGCTCTCCCATTCTCTTTTCAAAGTTCGAACAACTTTTTGCTCCTCCTCCCCACCTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTCTCTGAGGGTCCTTCTAT</pcr_primer_p1>
		<pcr_primer_p2>CAAAAGAGTATTCACCCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTCTCTCTGAGGGTCCTTCTATCAACAGAGCCCTTCTATTAAAGGGGACCTTCTAATACATGTTTTACAGTATTTATGTTTTTTGGCAATTCTTAATTTCTTTCTTTTGCCCGATTTTTTTGGCTATGCCTAATTTTTTAGGTTTTACCTAACTTTTTTTTTGGTTATGCTCAATTTTTGGCTATGGCCAATTTTCTGGCCGTGTTTAGTCTTTTTTATTATCCTTTTTTGGGTGAATACTCTTTTG</canonical_amplicon>
		<polymorphic_amplicon>CTCTCTCTGAGGGTCCTTCTATCAACAGAGCCCTTCTATTAAAGGGGACCTTCTAATACATGTTTTACAGTATTTATGTTTTTTGGCAATTCTTAATTTCTTKCTTTTGCCCGATTTTTTTGGCTATGCCTAATTTTTTAGGTTTTACCTAACTTTTTTTTTGGTTATGCTCAATTTTTGGCTATGGCCAATTTTCTGGCCGTGTTTAGTCTTTTTTATTATCCTTTTTTGGGTGAATACTCTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4476</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>494415</contig_pos>
        <strand>+</strand>
        <context>CGATTTTCAT[A/T]GAAATTatca</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTACGCGTTTTCTGGGTTTTTCCTAGCGGTGATTTTTCATCGATTTTCAT</left_flank>
        <right_flank>GAAATTATCAGCCTGTTTGCCGCGCCTCTGGCTCTTCAAACAGCTGGCTG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAACAAAAAAAAACTTATTTGATACATTTCCATTTTTCTGGTCTTCCTCCATTTCCTCCCAATGGTTCTCCTCTCTCATTGCTTTTTCTTCTTTTCTTCGAACAAGTTTTTTTTCTTCTTATCCCATTTCTTGTTTCTTAGAATGACCCAGCACTAATATGTATGCTCTCTATGTGTTAACGCAAATTTCCGCCCCGAGATGCGAAAGCGCTGTTTTTAATGAATATGAATATAGATAGAGATGTACCTCTTCTCACTTTCGCGTCCTCCAGTTTCTTTTTCCTCATTTTTTTTGGCTCCCAACAAATTTTGAGCACTAAAAGTTTAGACTTAAAAGAAACAGTTTTCTAAAAGTACATTTTGCAATTCGAAATACTTTATGTATAGGTTTTGAGTGATAACAGAAGACTGCATGGTTGGTCTTTTGGACTGATAAGAACTATTTTCTTTACGCGTTTTCTGGGTTTTTCCTAGCGGTGATTTTTCATCGATTTTCATTGAAATTATCAGCCTGTTTGCCGCGCCTCTGGCTCTTCAAACAGCTGGCTGGTGCGCCTTCGGCGCGATTTGACCTATTTATTTTAATGTTCGTCGCTTCGGTCCTCACTCTTTCCCGAAAGATCACGTCAATTTATATTTAATTTTCAAGCTTTTCAAAAATGTATGGACGGAAATAAAAATATGAAAATTCCAGCTAGTTTTTATGAGGAACGAAAGATGAAAATGTCAGAAGTTAAAACCGAAAATATTGACCACTAGAATTCCACAAGACGCAGTACCGCGAAAGAAATGATATAATTATTGCATTTTTGGTAAAAGTGTACCGTAAACATTCTAATTGAACGATCCCTAATTTTAAAGAAAGTAGAAACCATTAAGAAAACTAAACATACAGTAAAACCTTTATTAGAAGGGCCAGCCTTTCTATTGTTTCAAGGTATCTAGAGAGAGCCCTTCTATTAGAGGGGCCCTTTTATTTTTCCGGTCATTTTTTTCCGA</canonical>
            <polymorphic>CAAACAAAAAAAAACTTATTTGATACATTTCCATTTTTCTGGTCTTCCTCCATTTCCTCCCAATGGTTCTCCTCTCTCATTGCTTTTTCTTCTTTTCTTCGAACAAGTTTTTTTTCTTCTTATCCCATTTCTTGTTTCTTAGAATGACCCAGCACTAATATGTATGCTCTCTATGTGTTAACGCAAATTTCCGCCCCGAGATGCGAAAGCGCTGTTTTTAATGAATATGAATATAGATAGAGATGTACCTCTTCTCACTTTCGCGTCCTCCAGTTTCTTTTTCCTCATTTTTTTTGGCTCCCAACAAATTTTGAGCACTAAAAGTTTAGACTTAAAAGAAACAGTTTTCTAAAAGTACATTTTGCAATTCGAAATACTTTATGTATAGGTTTTGAGTGATAACAGAAGACTGCATGGTTGGTCTTTTGGACTGATAAGAACTATTTTCTTTACGCGTTTTCTGGGTTTTTCCTAGCGGTGATTTTTCATCGATTTTCATWGAAATTATCAGCCTGTTTGCCGCGCCTCTGGCTCTTCAAACAGCTGGCTGGTGCGCCTTCGGCGCGATTTGACCTATTTATTTTAATGTTCGTCGCTTCGGTCCTCACTCTTTCCCGAAAGATCACGTCAATTTATATTTAATTTTCAAGCTTTTCAAAAATGTATGGACGGAAATAAAAATATGAAAATTCCAGCTAGTTTTTATGAGGAACGAAAGATGAAAATGTCAGAAGTTAAAACCGAAAATATTGACCACTAGAATTCCACAAGACGCAGTACCGCGAAAGAAATGATATAATTATTGCATTTTTGGTAAAAGTGTACCGTAAACATTCTAATTGAACGATCCCTAATTTTAAAGAAAGTAGAAACCATTAAGAAAACTAAACATACAGTAAAACCTTTATTAGAAGGGCCAGCCTTTCTATTGTTTCAAGGTATCTAGAGAGAGCCCTTCTATTAGAGGGGCCCTTTTATTTTTCCGGTCATTTTTTTCCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTTTACGCGTTTTCTG</pcr_primer_p1>
		<pcr_primer_p2>GCTGGAATTTTCATATTTTTATTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTTTACGCGTTTTCTGGGTTTTTCCTAGCGGTGATTTTTCATCGATTTTCATTGAAATTATCAGCCTGTTTGCCGCGCCTCTGGCTCTTCAAACAGCTGGCTGGTGCGCCTTCGGCGCGATTTGACCTATTTATTTTAATGTTCGTCGCTTCGGTCCTCACTCTTTCCCGAAAGATCACGTCAATTTATATTTAATTTTCAAGCTTTTCAAAAATGTATGGACGGAAATAAAAATATGAAAATTCCAGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTTTACGCGTTTTCTGGGTTTTTCCTAGCGGTGATTTTTCATCGATTTTCATWGAAATTATCAGCCTGTTTGCCGCGCCTCTGGCTCTTCAAACAGCTGGCTGGTGCGCCTTCGGCGCGATTTGACCTATTTATTTTAATGTTCGTCGCTTCGGTCCTCACTCTTTCCCGAAAGATCACGTCAATTTATATTTAATTTTCAAGCTTTTCAAAAATGTATGGACGGAAATAAAAATATGAAAATTCCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4477</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>494386</contig_pos>
        <strand>+</strand>
        <context>CTGGGTTTTT[C/T]CTAGCGGTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCTTTTGGACTGATAAGAACTATTTTCTTTACGCGTTTTCTGGGTTTTT</left_flank>
        <right_flank>CTAGCGGTGATTTTTCATCGATTTTCATTGAAATTATCAGCCTGTTTGCC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTTCTTTTCCCATGACTTTATATGATCAAACAAAAAAAAACTTATTTGATACATTTCCATTTTTCTGGTCTTCCTCCATTTCCTCCCAATGGTTCTCCTCTCTCATTGCTTTTTCTTCTTTTCTTCGAACAAGTTTTTTTTCTTCTTATCCCATTTCTTGTTTCTTAGAATGACCCAGCACTAATATGTATGCTCTCTATGTGTTAACGCAAATTTCCGCCCCGAGATGCGAAAGCGCTGTTTTTAATGAATATGAATATAGATAGAGATGTACCTCTTCTCACTTTCGCGTCCTCCAGTTTCTTTTTCCTCATTTTTTTTGGCTCCCAACAAATTTTGAGCACTAAAAGTTTAGACTTAAAAGAAACAGTTTTCTAAAAGTACATTTTGCAATTCGAAATACTTTATGTATAGGTTTTGAGTGATAACAGAAGACTGCATGGTTGGTCTTTTGGACTGATAAGAACTATTTTCTTTACGCGTTTTCTGGGTTTTTCCTAGCGGTGATTTTTCATCGATTTTCATTGAAATTATCAGCCTGTTTGCCGCGCCTCTGGCTCTTCAAACAGCTGGCTGGTGCGCCTTCGGCGCGATTTGACCTATTTATTTTAATGTTCGTCGCTTCGGTCCTCACTCTTTCCCGAAAGATCACGTCAATTTATATTTAATTTTCAAGCTTTTCAAAAATGTATGGACGGAAATAAAAATATGAAAATTCCAGCTAGTTTTTATGAGGAACGAAAGATGAAAATGTCAGAAGTTAAAACCGAAAATATTGACCACTAGAATTCCACAAGACGCAGTACCGCGAAAGAAATGATATAATTATTGCATTTTTGGTAAAAGTGTACCGTAAACATTCTAATTGAACGATCCCTAATTTTAAAGAAAGTAGAAACCATTAAGAAAACTAAACATACAGTAAAACCTTTATTAGAAGGGCCAGCCTTTCTATTGTTTCAAGGTATCTAGAGAGAGCCCTTCTATTAGAGGGGCC</canonical>
            <polymorphic>TATTTTCTTTTCCCATGACTTTATATGATCAAACAAAAAAAAACTTATTTGATACATTTCCATTTTTCTGGTCTTCCTCCATTTCCTCCCAATGGTTCTCCTCTCTCATTGCTTTTTCTTCTTTTCTTCGAACAAGTTTTTTTTCTTCTTATCCCATTTCTTGTTTCTTAGAATGACCCAGCACTAATATGTATGCTCTCTATGTGTTAACGCAAATTTCCGCCCCGAGATGCGAAAGCGCTGTTTTTAATGAATATGAATATAGATAGAGATGTACCTCTTCTCACTTTCGCGTCCTCCAGTTTCTTTTTCCTCATTTTTTTTGGCTCCCAACAAATTTTGAGCACTAAAAGTTTAGACTTAAAAGAAACAGTTTTCTAAAAGTACATTTTGCAATTCGAAATACTTTATGTATAGGTTTTGAGTGATAACAGAAGACTGCATGGTTGGTCTTTTGGACTGATAAGAACTATTTTCTTTACGCGTTTTCTGGGTTTTTYCTAGCGGTGATTTTTCATCGATTTTCATTGAAATTATCAGCCTGTTTGCCGCGCCTCTGGCTCTTCAAACAGCTGGCTGGTGCGCCTTCGGCGCGATTTGACCTATTTATTTTAATGTTCGTCGCTTCGGTCCTCACTCTTTCCCGAAAGATCACGTCAATTTATATTTAATTTTCAAGCTTTTCAAAAATGTATGGACGGAAATAAAAATATGAAAATTCCAGCTAGTTTTTATGAGGAACGAAAGATGAAAATGTCAGAAGTTAAAACCGAAAATATTGACCACTAGAATTCCACAAGACGCAGTACCGCGAAAGAAATGATATAATTATTGCATTTTTGGTAAAAGTGTACCGTAAACATTCTAATTGAACGATCCCTAATTTTAAAGAAAGTAGAAACCATTAAGAAAACTAAACATACAGTAAAACCTTTATTAGAAGGGCCAGCCTTTCTATTGTTTCAAGGTATCTAGAGAGAGCCCTTCTATTAGAGGGGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCTTTTGGACTGATAAGAAC</pcr_primer_p1>
		<pcr_primer_p2>GCTGGAATTTTCATATTTTTATTT</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>GGTCTTTTGGACTGATAAGAACTATTTTCTTTACGCGTTTTCTGGGTTTTTCCTAGCGGTGATTTTTCATCGATTTTCATTGAAATTATCAGCCTGTTTGCCGCGCCTCTGGCTCTTCAAACAGCTGGCTGGTGCGCCTTCGGCGCGATTTGACCTATTTATTTTAATGTTCGTCGCTTCGGTCCTCACTCTTTCCCGAAAGATCACGTCAATTTATATTTAATTTTCAAGCTTTTCAAAAATGTATGGACGGAAATAAAAATATGAAAATTCCAGC</canonical_amplicon>
		<polymorphic_amplicon>GGTCTTTTGGACTGATAAGAACTATTTTCTTTACGCGTTTTCTGGGTTTTTYCTAGCGGTGATTTTTCATCGATTTTCATTGAAATTATCAGCCTGTTTGCCGCGCCTCTGGCTCTTCAAACAGCTGGCTGGTGCGCCTTCGGCGCGATTTGACCTATTTATTTTAATGTTCGTCGCTTCGGTCCTCACTCTTTCCCGAAAGATCACGTCAATTTATATTTAATTTTCAAGCTTTTCAAAAATGTATGGACGGAAATAAAAATATGAAAATTCCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4478</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>494358</contig_pos>
        <strand>+</strand>
        <context>GATAAGAACT[A/T]TTTTCTTTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAGTGATAACAGAAGACTGCATGGTTGGTCTTTTGGACTGATAAGAACT</left_flank>
        <right_flank>TTTTCTTTACGCGTTTTCTGGGTTTTTCCTAGCGGTGATTTTTCATCGAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAAAGTTCAAATCGATTCTAAAAAATTATTTTCTTTTCCCATGACTTTATATGATCAAACAAAAAAAAACTTATTTGATACATTTCCATTTTTCTGGTCTTCCTCCATTTCCTCCCAATGGTTCTCCTCTCTCATTGCTTTTTCTTCTTTTCTTCGAACAAGTTTTTTTTCTTCTTATCCCATTTCTTGTTTCTTAGAATGACCCAGCACTAATATGTATGCTCTCTATGTGTTAACGCAAATTTCCGCCCCGAGATGCGAAAGCGCTGTTTTTAATGAATATGAATATAGATAGAGATGTACCTCTTCTCACTTTCGCGTCCTCCAGTTTCTTTTTCCTCATTTTTTTTGGCTCCCAACAAATTTTGAGCACTAAAAGTTTAGACTTAAAAGAAACAGTTTTCTAAAAGTACATTTTGCAATTCGAAATACTTTATGTATAGGTTTTGAGTGATAACAGAAGACTGCATGGTTGGTCTTTTGGACTGATAAGAACTATTTTCTTTACGCGTTTTCTGGGTTTTTCCTAGCGGTGATTTTTCATCGATTTTCATTGAAATTATCAGCCTGTTTGCCGCGCCTCTGGCTCTTCAAACAGCTGGCTGGTGCGCCTTCGGCGCGATTTGACCTATTTATTTTAATGTTCGTCGCTTCGGTCCTCACTCTTTCCCGAAAGATCACGTCAATTTATATTTAATTTTCAAGCTTTTCAAAAATGTATGGACGGAAATAAAAATATGAAAATTCCAGCTAGTTTTTATGAGGAACGAAAGATGAAAATGTCAGAAGTTAAAACCGAAAATATTGACCACTAGAATTCCACAAGACGCAGTACCGCGAAAGAAATGATATAATTATTGCATTTTTGGTAAAAGTGTACCGTAAACATTCTAATTGAACGATCCCTAATTTTAAAGAAAGTAGAAACCATTAAGAAAACTAAACATACAGTAAAACCTTTATTAGAAGGGCCAGCCTTTCTATTGTTTCAAGGTATC</canonical>
            <polymorphic>TATAAAGTTCAAATCGATTCTAAAAAATTATTTTCTTTTCCCATGACTTTATATGATCAAACAAAAAAAAACTTATTTGATACATTTCCATTTTTCTGGTCTTCCTCCATTTCCTCCCAATGGTTCTCCTCTCTCATTGCTTTTTCTTCTTTTCTTCGAACAAGTTTTTTTTCTTCTTATCCCATTTCTTGTTTCTTAGAATGACCCAGCACTAATATGTATGCTCTCTATGTGTTAACGCAAATTTCCGCCCCGAGATGCGAAAGCGCTGTTTTTAATGAATATGAATATAGATAGAGATGTACCTCTTCTCACTTTCGCGTCCTCCAGTTTCTTTTTCCTCATTTTTTTTGGCTCCCAACAAATTTTGAGCACTAAAAGTTTAGACTTAAAAGAAACAGTTTTCTAAAAGTACATTTTGCAATTCGAAATACTTTATGTATAGGTTTTGAGTGATAACAGAAGACTGCATGGTTGGTCTTTTGGACTGATAAGAACTWTTTTCTTTACGCGTTTTCTGGGTTTTTCCTAGCGGTGATTTTTCATCGATTTTCATTGAAATTATCAGCCTGTTTGCCGCGCCTCTGGCTCTTCAAACAGCTGGCTGGTGCGCCTTCGGCGCGATTTGACCTATTTATTTTAATGTTCGTCGCTTCGGTCCTCACTCTTTCCCGAAAGATCACGTCAATTTATATTTAATTTTCAAGCTTTTCAAAAATGTATGGACGGAAATAAAAATATGAAAATTCCAGCTAGTTTTTATGAGGAACGAAAGATGAAAATGTCAGAAGTTAAAACCGAAAATATTGACCACTAGAATTCCACAAGACGCAGTACCGCGAAAGAAATGATATAATTATTGCATTTTTGGTAAAAGTGTACCGTAAACATTCTAATTGAACGATCCCTAATTTTAAAGAAAGTAGAAACCATTAAGAAAACTAAACATACAGTAAAACCTTTATTAGAAGGGCCAGCCTTTCTATTGTTTCAAGGTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGATGTACCTCTTCTCACTTTC</pcr_primer_p1>
		<pcr_primer_p2>GAAAATCGATGAAAAATCACC</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>AGAGATGTACCTCTTCTCACTTTCGCGTCCTCCAGTTTCTTTTTCCTCATTTTTTTTGGCTCCCAACAAATTTTGAGCACTAAAAGTTTAGACTTAAAAGAAACAGTTTTCTAAAAGTACATTTTGCAATTCGAAATACTTTATGTATAGGTTTTGAGTGATAACAGAAGACTGCATGGTTGGTCTTTTGGACTGATAAGAACTATTTTCTTTACGCGTTTTCTGGGTTTTTCCTAGCGGTGATTTTTCATCGATTTTC</canonical_amplicon>
		<polymorphic_amplicon>AGAGATGTACCTCTTCTCACTTTCGCGTCCTCCAGTTTCTTTTTCCTCATTTTTTTTGGCTCCCAACAAATTTTGAGCACTAAAAGTTTAGACTTAAAAGAAACAGTTTTCTAAAAGTACATTTTGCAATTCGAAATACTTTATGTATAGGTTTTGAGTGATAACAGAAGACTGCATGGTTGGTCTTTTGGACTGATAAGAACTWTTTTCTTTACGCGTTTTCTGGGTTTTTCCTAGCGGTGATTTTTCATCGATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4479</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>494225</contig_pos>
        <strand>+</strand>
        <context>CCCAACAAAT[C/T]TTGAGCACTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCGCGTCCTCCAGTTTCTTTTTCCTCATTTTTTTTGGCTCCCAACAAAT</left_flank>
        <right_flank>TTGAGCACTAAAAGTTTAGACTTAAAAGAAACAGTTTTCTAAAAGTACAT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCACCAACATTTTATCAATTCACAGATTGTTGATTTTTCTCATATTAGCCGAGATAAAAGAGATCAAAGTTCACTTGTATGGTAGGCTTCTATTAGAGCAAATACGGTATCTTCTTTTTTCTAAAAAAAATCTATAAAGTTCAAATCGATTCTAAAAAATTATTTTCTTTTCCCATGACTTTATATGATCAAACAAAAAAAAACTTATTTGATACATTTCCATTTTTCTGGTCTTCCTCCATTTCCTCCCAATGGTTCTCCTCTCTCATTGCTTTTTCTTCTTTTCTTCGAACAAGTTTTTTTTCTTCTTATCCCATTTCTTGTTTCTTAGAATGACCCAGCACTAATATGTATGCTCTCTATGTGTTAACGCAAATTTCCGCCCCGAGATGCGAAAGCGCTGTTTTTAATGAATATGAATATAGATAGAGATGTACCTCTTCTCACTTTCGCGTCCTCCAGTTTCTTTTTCCTCATTTTTTTTGGCTCCCAACAAATTTTGAGCACTAAAAGTTTAGACTTAAAAGAAACAGTTTTCTAAAAGTACATTTTGCAATTCGAAATACTTTATGTATAGGTTTTGAGTGATAACAGAAGACTGCATGGTTGGTCTTTTGGACTGATAAGAACTATTTTCTTTACGCGTTTTCTGGGTTTTTCCTAGCGGTGATTTTTCATCGATTTTCATTGAAATTATCAGCCTGTTTGCCGCGCCTCTGGCTCTTCAAACAGCTGGCTGGTGCGCCTTCGGCGCGATTTGACCTATTTATTTTAATGTTCGTCGCTTCGGTCCTCACTCTTTCCCGAAAGATCACGTCAATTTATATTTAATTTTCAAGCTTTTCAAAAATGTATGGACGGAAATAAAAATATGAAAATTCCAGCTAGTTTTTATGAGGAACGAAAGATGAAAATGTCAGAAGTTAAAACCGAAAATATTGACCACTAGAATTCCACAAGACGCAGTACCGCGAAAGAAATGATATAATTATTGCATTT</canonical>
            <polymorphic>ATCACCAACATTTTATCAATTCACAGATTGTTGATTTTTCTCATATTAGCCGAGATAAAAGAGATCAAAGTTCACTTGTATGGTAGGCTTCTATTAGAGCAAATACGGTATCTTCTTTTTTCTAAAAAAAATCTATAAAGTTCAAATCGATTCTAAAAAATTATTTTCTTTTCCCATGACTTTATATGATCAAACAAAAAAAAACTTATTTGATACATTTCCATTTTTCTGGTCTTCCTCCATTTCCTCCCAATGGTTCTCCTCTCTCATTGCTTTTTCTTCTTTTCTTCGAACAAGTTTTTTTTCTTCTTATCCCATTTCTTGTTTCTTAGAATGACCCAGCACTAATATGTATGCTCTCTATGTGTTAACGCAAATTTCCGCCCCGAGATGCGAAAGCGCTGTTTTTAATGAATATGAATATAGATAGAGATGTACCTCTTCTCACTTTCGCGTCCTCCAGTTTCTTTTTCCTCATTTTTTTTGGCTCCCAACAAATYTTGAGCACTAAAAGTTTAGACTTAAAAGAAACAGTTTTCTAAAAGTACATTTTGCAATTCGAAATACTTTATGTATAGGTTTTGAGTGATAACAGAAGACTGCATGGTTGGTCTTTTGGACTGATAAGAACTATTTTCTTTACGCGTTTTCTGGGTTTTTCCTAGCGGTGATTTTTCATCGATTTTCATTGAAATTATCAGCCTGTTTGCCGCGCCTCTGGCTCTTCAAACAGCTGGCTGGTGCGCCTTCGGCGCGATTTGACCTATTTATTTTAATGTTCGTCGCTTCGGTCCTCACTCTTTCCCGAAAGATCACGTCAATTTATATTTAATTTTCAAGCTTTTCAAAAATGTATGGACGGAAATAAAAATATGAAAATTCCAGCTAGTTTTTATGAGGAACGAAAGATGAAAATGTCAGAAGTTAAAACCGAAAATATTGACCACTAGAATTCCACAAGACGCAGTACCGCGAAAGAAATGATATAATTATTGCATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>381 375 121 73 50</canonical_bands>
                <polymorphic_bands>502 375 73 50</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>217 141 137 127 121 73 59 47 37 17 13 11</canonical_bands>
                <polymorphic_bands>217 180 141 137 127 73 47 37 17 13 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTAGAATGACCCAGCACTAATA</pcr_primer_p1>
		<pcr_primer_p2>AGTATTTCGAATTGCAAAATGTA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CTTAGAATGACCCAGCACTAATATGTATGCTCTCTATGTGTTAACGCAAATTTCCGCCCCGAGATGCGAAAGCGCTGTTTTTAATGAATATGAATATAGATAGAGATGTACCTCTTCTCACTTTCGCGTCCTCCAGTTTCTTTTTCCTCATTTTTTTTGGCTCCCAACAAATTTTGAGCACTAAAAGTTTAGACTTAAAAGAAACAGTTTTCTAAAAGTACATTTTGCAATTCGAAATACT</canonical_amplicon>
		<polymorphic_amplicon>CTTAGAATGACCCAGCACTAATATGTATGCTCTCTATGTGTTAACGCAAATTTCCGCCCCGAGATGCGAAAGCGCTGTTTTTAATGAATATGAATATAGATAGAGATGTACCTCTTCTCACTTTCGCGTCCTCCAGTTTCTTTTTCCTCATTTTTTTTGGCTCCCAACAAATYTTGAGCACTAAAAGTTTAGACTTAAAAGAAACAGTTTTCTAAAAGTACATTTTGCAATTCGAAATACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4480</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>494208</contig_pos>
        <strand>+</strand>
        <context>CCTCWTTTTT[C/T]TTGGCTCCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGTACCTCTTCTCACTTTCGCGTCCTCCAGTTTCTTTTTCCTCATTTTT</left_flank>
        <right_flank>TTGGCTCCCAACAAATTTTGAGCACTAAAAGTTTAGACTTAAAAGAAACA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTATTTATCTTGATATCACCAACATTTTATCAATTCACAGATTGTTGATTTTTCTCATATTAGCCGAGATAAAAGAGATCAAAGTTCACTTGTATGGTAGGCTTCTATTAGAGCAAATACGGTATCTTCTTTTTTCTAAAAAAAATCTATAAAGTTCAAATCGATTCTAAAAAATTATTTTCTTTTCCCATGACTTTATATGATCAAACAAAAAAAAACTTATTTGATACATTTCCATTTTTCTGGTCTTCCTCCATTTCCTCCCAATGGTTCTCCTCTCTCATTGCTTTTTCTTCTTTTCTTCGAACAAGTTTTTTTTCTTCTTATCCCATTTCTTGTTTCTTAGAATGACCCAGCACTAATATGTATGCTCTCTATGTGTTAACGCAAATTTCCGCCCCGAGATGCGAAAGCGCTGTTTTTAATGAATATGAATATAGATAGAGATGTACCTCTTCTCACTTTCGCGTCCTCCAGTTTCTTTTTCCTCATTTTTTTTGGCTCCCAACAAATTTTGAGCACTAAAAGTTTAGACTTAAAAGAAACAGTTTTCTAAAAGTACATTTTGCAATTCGAAATACTTTATGTATAGGTTTTGAGTGATAACAGAAGACTGCATGGTTGGTCTTTTGGACTGATAAGAACTATTTTCTTTACGCGTTTTCTGGGTTTTTCCTAGCGGTGATTTTTCATCGATTTTCATTGAAATTATCAGCCTGTTTGCCGCGCCTCTGGCTCTTCAAACAGCTGGCTGGTGCGCCTTCGGCGCGATTTGACCTATTTATTTTAATGTTCGTCGCTTCGGTCCTCACTCTTTCCCGAAAGATCACGTCAATTTATATTTAATTTTCAAGCTTTTCAAAAATGTATGGACGGAAATAAAAATATGAAAATTCCAGCTAGTTTTTATGAGGAACGAAAGATGAAAATGTCAGAAGTTAAAACCGAAAATATTGACCACTAGAATTCCACAAGACGCAGTACCGCGAAAGAAATG</canonical>
            <polymorphic>AAATTATTTATCTTGATATCACCAACATTTTATCAATTCACAGATTGTTGATTTTTCTCATATTAGCCGAGATAAAAGAGATCAAAGTTCACTTGTATGGTAGGCTTCTATTAGAGCAAATACGGTATCTTCTTTTTTCTAAAAAAAATCTATAAAGTTCAAATCGATTCTAAAAAATTATTTTCTTTTCCCATGACTTTATATGATCAAACAAAAAAAAACTTATTTGATACATTTCCATTTTTCTGGTCTTCCTCCATTTCCTCCCAATGGTTCTCCTCTCTCATTGCTTTTTCTTCTTTTCTTCGAACAAGTTTTTTTTCTTCTTATCCCATTTCTTGTTTCTTAGAATGACCCAGCACTAATATGTATGCTCTCTATGTGTTAACGCAAATTTCCGCCCCGAGATGCGAAAGCGCTGTTTTTAATGAATATGAATATAGATAGAGATGTACCTCTTCTCACTTTCGCGTCCTCCAGTTTCTTTTTCCTCATTTTTYTTGGCTCCCAACAAATTTTGAGCACTAAAAGTTTAGACTTAAAAGAAACAGTTTTCTAAAAGTACATTTTGCAATTCGAAATACTTTATGTATAGGTTTTGAGTGATAACAGAAGACTGCATGGTTGGTCTTTTGGACTGATAAGAACTATTTTCTTTACGCGTTTTCTGGGTTTTTCCTAGCGGTGATTTTTCATCGATTTTCATTGAAATTATCAGCCTGTTTGCCGCGCCTCTGGCTCTTCAAACAGCTGGCTGGTGCGCCTTCGGCGCGATTTGACCTATTTATTTTAATGTTCGTCGCTTCGGTCCTCACTCTTTCCCGAAAGATCACGTCAATTTATATTTAATTTTCAAGCTTTTCAAAAATGTATGGACGGAAATAAAAATATGAAAATTCCAGCTAGTTTTTATGAGGAACGAAAGATGAAAATGTCAGAAGTTAAAACCGAAAATATTGACCACTAGAATTCCACAAGACGCAGTACCGCGAAAGAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTAGAATGACCCAGCACTAATA</pcr_primer_p1>
		<pcr_primer_p2>AGTATTTCGAATTGCAAAATGTA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CTTAGAATGACCCAGCACTAATATGTATGCTCTCTATGTGTTAACGCAAATTTCCGCCCCGAGATGCGAAAGCGCTGTTTTTAATGAATATGAATATAGATAGAGATGTACCTCTTCTCACTTTCGCGTCCTCCAGTTTCTTTTTCCTCATTTTTTTTGGCTCCCAACAAATTTTGAGCACTAAAAGTTTAGACTTAAAAGAAACAGTTTTCTAAAAGTACATTTTGCAATTCGAAATACT</canonical_amplicon>
		<polymorphic_amplicon>CTTAGAATGACCCAGCACTAATATGTATGCTCTCTATGTGTTAACGCAAATTTCCGCCCCGAGATGCGAAAGCGCTGTTTTTAATGAATATGAATATAGATAGAGATGTACCTCTTCTCACTTTCGCGTCCTCCAGTTTCTTTTTCCTCATTTTTYTTGGCTCCCAACAAATTTTGAGCACTAAAAGTTTAGACTTAAAAGAAACAGTTTTCTAAAAGTACATTTTGCAATTCGAAATACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4481</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>494202</contig_pos>
        <strand>+</strand>
        <context>CTTTTTCCTC[A/T]TTTTTYTTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATAGAGATGTACCTCTTCTCACTTTCGCGTCCTCCAGTTTCTTTTTCCTC</left_flank>
        <right_flank>TTTTTTTTGGCTCCCAACAAATTTTGAGCACTAAAAGTTTAGACTTAAAA</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGATAAATTATTTATCTTGATATCACCAACATTTTATCAATTCACAGATTGTTGATTTTTCTCATATTAGCCGAGATAAAAGAGATCAAAGTTCACTTGTATGGTAGGCTTCTATTAGAGCAAATACGGTATCTTCTTTTTTCTAAAAAAAATCTATAAAGTTCAAATCGATTCTAAAAAATTATTTTCTTTTCCCATGACTTTATATGATCAAACAAAAAAAAACTTATTTGATACATTTCCATTTTTCTGGTCTTCCTCCATTTCCTCCCAATGGTTCTCCTCTCTCATTGCTTTTTCTTCTTTTCTTCGAACAAGTTTTTTTTCTTCTTATCCCATTTCTTGTTTCTTAGAATGACCCAGCACTAATATGTATGCTCTCTATGTGTTAACGCAAATTTCCGCCCCGAGATGCGAAAGCGCTGTTTTTAATGAATATGAATATAGATAGAGATGTACCTCTTCTCACTTTCGCGTCCTCCAGTTTCTTTTTCCTCATTTTTTTTGGCTCCCAACAAATTTTGAGCACTAAAAGTTTAGACTTAAAAGAAACAGTTTTCTAAAAGTACATTTTGCAATTCGAAATACTTTATGTATAGGTTTTGAGTGATAACAGAAGACTGCATGGTTGGTCTTTTGGACTGATAAGAACTATTTTCTTTACGCGTTTTCTGGGTTTTTCCTAGCGGTGATTTTTCATCGATTTTCATTGAAATTATCAGCCTGTTTGCCGCGCCTCTGGCTCTTCAAACAGCTGGCTGGTGCGCCTTCGGCGCGATTTGACCTATTTATTTTAATGTTCGTCGCTTCGGTCCTCACTCTTTCCCGAAAGATCACGTCAATTTATATTTAATTTTCAAGCTTTTCAAAAATGTATGGACGGAAATAAAAATATGAAAATTCCAGCTAGTTTTTATGAGGAACGAAAGATGAAAATGTCAGAAGTTAAAACCGAAAATATTGACCACTAGAATTCCACAAGACGCAGTACCGCGAAA</canonical>
            <polymorphic>ACTGATAAATTATTTATCTTGATATCACCAACATTTTATCAATTCACAGATTGTTGATTTTTCTCATATTAGCCGAGATAAAAGAGATCAAAGTTCACTTGTATGGTAGGCTTCTATTAGAGCAAATACGGTATCTTCTTTTTTCTAAAAAAAATCTATAAAGTTCAAATCGATTCTAAAAAATTATTTTCTTTTCCCATGACTTTATATGATCAAACAAAAAAAAACTTATTTGATACATTTCCATTTTTCTGGTCTTCCTCCATTTCCTCCCAATGGTTCTCCTCTCTCATTGCTTTTTCTTCTTTTCTTCGAACAAGTTTTTTTTCTTCTTATCCCATTTCTTGTTTCTTAGAATGACCCAGCACTAATATGTATGCTCTCTATGTGTTAACGCAAATTTCCGCCCCGAGATGCGAAAGCGCTGTTTTTAATGAATATGAATATAGATAGAGATGTACCTCTTCTCACTTTCGCGTCCTCCAGTTTCTTTTTCCTCWTTTTTTTTGGCTCCCAACAAATTTTGAGCACTAAAAGTTTAGACTTAAAAGAAACAGTTTTCTAAAAGTACATTTTGCAATTCGAAATACTTTATGTATAGGTTTTGAGTGATAACAGAAGACTGCATGGTTGGTCTTTTGGACTGATAAGAACTATTTTCTTTACGCGTTTTCTGGGTTTTTCCTAGCGGTGATTTTTCATCGATTTTCATTGAAATTATCAGCCTGTTTGCCGCGCCTCTGGCTCTTCAAACAGCTGGCTGGTGCGCCTTCGGCGCGATTTGACCTATTTATTTTAATGTTCGTCGCTTCGGTCCTCACTCTTTCCCGAAAGATCACGTCAATTTATATTTAATTTTCAAGCTTTTCAAAAATGTATGGACGGAAATAAAAATATGAAAATTCCAGCTAGTTTTTATGAGGAACGAAAGATGAAAATGTCAGAAGTTAAAACCGAAAATATTGACCACTAGAATTCCACAAGACGCAGTACCGCGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTAGAATGACCCAGCACTAATA</pcr_primer_p1>
		<pcr_primer_p2>AGTATTTCGAATTGCAAAATGTA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CTTAGAATGACCCAGCACTAATATGTATGCTCTCTATGTGTTAACGCAAATTTCCGCCCCGAGATGCGAAAGCGCTGTTTTTAATGAATATGAATATAGATAGAGATGTACCTCTTCTCACTTTCGCGTCCTCCAGTTTCTTTTTCCTCATTTTTTTTGGCTCCCAACAAATTTTGAGCACTAAAAGTTTAGACTTAAAAGAAACAGTTTTCTAAAAGTACATTTTGCAATTCGAAATACT</canonical_amplicon>
		<polymorphic_amplicon>CTTAGAATGACCCAGCACTAATATGTATGCTCTCTATGTGTTAACGCAAATTTCCGCCCCGAGATGCGAAAGCGCTGTTTTTAATGAATATGAATATAGATAGAGATGTACCTCTTCTCACTTTCGCGTCCTCCAGTTTCTTTTTCCTCWTTTTTTTTGGCTCCCAACAAATTTTGAGCACTAAAAGTTTAGACTTAAAAGAAACAGTTTTCTAAAAGTACATTTTGCAATTCGAAATACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4482</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>494678</contig_pos>
        <strand>+</strand>
        <context>ACCACTAGAA[A/T]TCCACAAGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGAAAGATGAAAATGTCAGAAGTTAAAACCGAAAATATTGACCACTAGAA</left_flank>
        <right_flank>TCCACAAGACGCAGTACCGCGAAAGAAATGATATAATTATTGCATTTTTG</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTCCTCCAGTTTCTTTTTCCTCATTTTTTTTGGCTCCCAACAAATTTTGAGCACTAAAAGTTTAGACTTAAAAGAAACAGTTTTCTAAAAGTACATTTTGCAATTCGAAATACTTTATGTATAGGTTTTGAGTGATAACAGAAGACTGCATGGTTGGTCTTTTGGACTGATAAGAACTATTTTCTTTACGCGTTTTCTGGGTTTTTCCTAGCGGTGATTTTTCATCGATTTTCATTGAAATTATCAGCCTGTTTGCCGCGCCTCTGGCTCTTCAAACAGCTGGCTGGTGCGCCTTCGGCGCGATTTGACCTATTTATTTTAATGTTCGTCGCTTCGGTCCTCACTCTTTCCCGAAAGATCACGTCAATTTATATTTAATTTTCAAGCTTTTCAAAAATGTATGGACGGAAATAAAAATATGAAAATTCCAGCTAGTTTTTATGAGGAACGAAAGATGAAAATGTCAGAAGTTAAAACCGAAAATATTGACCACTAGAATTCCACAAGACGCAGTACCGCGAAAGAAATGATATAATTATTGCATTTTTGGTAAAAGTGTACCGTAAACATTCTAATTGAACGATCCCTAATTTTAAAGAAAGTAGAAACCATTAAGAAAACTAAACATACAGTAAAACCTTTATTAGAAGGGCCAGCCTTTCTATTGTTTCAAGGTATCTAGAGAGAGCCCTTCTATTAGAGGGGCCCTTTTATTTTTCCGGTCATTTTTTTCCGAAATTTTTTATCAAAAATTAGGTGAATTTTCGCTGAGAATGCATGAATTTCACCAAAGTTAAGCAATTTTTTGAGTGGAAAAGAGTGTTCCAACGAATTCCTGTGAAATTATGGCCTAGTATTTTTCCGAGCCCTTCTCAGATGACTCTTCTATTAGAGAGGTTCTTCAATTAAAGGGACGCTTCTAATACAGGTTTTACGGTAGATCGATTTGTTGAAGTGAAATCTTTTCTATAGGATCTGTTTTTGAAGTGGTTCCAAAGT</canonical>
            <polymorphic>CGTCCTCCAGTTTCTTTTTCCTCATTTTTTTTGGCTCCCAACAAATTTTGAGCACTAAAAGTTTAGACTTAAAAGAAACAGTTTTCTAAAAGTACATTTTGCAATTCGAAATACTTTATGTATAGGTTTTGAGTGATAACAGAAGACTGCATGGTTGGTCTTTTGGACTGATAAGAACTATTTTCTTTACGCGTTTTCTGGGTTTTTCCTAGCGGTGATTTTTCATCGATTTTCATTGAAATTATCAGCCTGTTTGCCGCGCCTCTGGCTCTTCAAACAGCTGGCTGGTGCGCCTTCGGCGCGATTTGACCTATTTATTTTAATGTTCGTCGCTTCGGTCCTCACTCTTTCCCGAAAGATCACGTCAATTTATATTTAATTTTCAAGCTTTTCAAAAATGTATGGACGGAAATAAAAATATGAAAATTCCAGCTAGTTTTTATGAGGAACGAAAGATGAAAATGTCAGAAGTTAAAACCGAAAATATTGACCACTAGAAWTCCACAAGACGCAGTACCGCGAAAGAAATGATATAATTATTGCATTTTTGGTAAAAGTGTACCGTAAACATTCTAATTGAACGATCCCTAATTTTAAAGAAAGTAGAAACCATTAAGAAAACTAAACATACAGTAAAACCTTTATTAGAAGGGCCAGCCTTTCTATTGTTTCAAGGTATCTAGAGAGAGCCCTTCTATTAGAGGGGCCCTTTTATTTTTCCGGTCATTTTTTTCCGAAATTTTTTATCAAAAATTAGGTGAATTTTCGCTGAGAATGCATGAATTTCACCAAAGTTAAGCAATTTTTTGAGTGGAAAAGAGTGTTCCAACGAATTCCTGTGAAATTATGGCCTAGTATTTTTCCGAGCCCTTCTCAGATGACTCTTCTATTAGAGAGGTTCTTCAATTAAAGGGACGCTTCTAATACAGGTTTTACGGTAGATCGATTTGTTGAAGTGAAATCTTTTCTATAGGATCTGTTTTTGAAGTGGTTCCAAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>381 240 169 73 50 43 23 21</canonical_bands>
                <polymorphic_bands>381 313 169 50 43 23 21</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>497 334 169</canonical_bands>
                <polymorphic_bands>831 169</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>148 137 127 96 73 62 59 47 43 40 37 31 21 19 15 14 11 11 9</canonical_bands>
                <polymorphic_bands>148 137 127 110 96 62 59 47 43 40 31 21 19 15 14 11 11 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATATGAAAATTCCAGCTAGT</pcr_primer_p1>
		<pcr_primer_p2>CCCTTCTAATAAAGGTTTTACTGT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AAAAATATGAAAATTCCAGCTAGTTTTTATGAGGAACGAAAGATGAAAATGTCAGAAGTTAAAACCGAAAATATTGACCACTAGAATTCCACAAGACGCAGTACCGCGAAAGAAATGATATAATTATTGCATTTTTGGTAAAAGTGTACCGTAAACATTCTAATTGAACGATCCCTAATTTTAAAGAAAGTAGAAACCATTAAGAAAACTAAACATACAGTAAAACCTTTATTAGAAGGG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATATGAAAATTCCAGCTAGTTTTTATGAGGAACGAAAGATGAAAATGTCAGAAGTTAAAACCGAAAATATTGACCACTAGAAWTCCACAAGACGCAGTACCGCGAAAGAAATGATATAATTATTGCATTTTTGGTAAAAGTGTACCGTAAACATTCTAATTGAACGATCCCTAATTTTAAAGAAAGTAGAAACCATTAAGAAAACTAAACATACAGTAAAACCTTTATTAGAAGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4483</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>494634</contig_pos>
        <strand>+</strand>
        <context>GGAACGAAAG[A/C]TGAAAATGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACGGAAATAAAAATATGAAAATTCCAGCTAGTTTTTATGAGGAACGAAAG</left_flank>
        <right_flank>TGAAAATGTCAGAAGTTAAAACCGAAAATATTGACCACTAGAATTCCACA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGAATATGAATATAGATAGAGATGTACCTCTTCTCACTTTCGCGTCCTCCAGTTTCTTTTTCCTCATTTTTTTTGGCTCCCAACAAATTTTGAGCACTAAAAGTTTAGACTTAAAAGAAACAGTTTTCTAAAAGTACATTTTGCAATTCGAAATACTTTATGTATAGGTTTTGAGTGATAACAGAAGACTGCATGGTTGGTCTTTTGGACTGATAAGAACTATTTTCTTTACGCGTTTTCTGGGTTTTTCCTAGCGGTGATTTTTCATCGATTTTCATTGAAATTATCAGCCTGTTTGCCGCGCCTCTGGCTCTTCAAACAGCTGGCTGGTGCGCCTTCGGCGCGATTTGACCTATTTATTTTAATGTTCGTCGCTTCGGTCCTCACTCTTTCCCGAAAGATCACGTCAATTTATATTTAATTTTCAAGCTTTTCAAAAATGTATGGACGGAAATAAAAATATGAAAATTCCAGCTAGTTTTTATGAGGAACGAAAGATGAAAATGTCAGAAGTTAAAACCGAAAATATTGACCACTAGAATTCCACAAGACGCAGTACCGCGAAAGAAATGATATAATTATTGCATTTTTGGTAAAAGTGTACCGTAAACATTCTAATTGAACGATCCCTAATTTTAAAGAAAGTAGAAACCATTAAGAAAACTAAACATACAGTAAAACCTTTATTAGAAGGGCCAGCCTTTCTATTGTTTCAAGGTATCTAGAGAGAGCCCTTCTATTAGAGGGGCCCTTTTATTTTTCCGGTCATTTTTTTCCGAAATTTTTTATCAAAAATTAGGTGAATTTTCGCTGAGAATGCATGAATTTCACCAAAGTTAAGCAATTTTTTGAGTGGAAAAGAGTGTTCCAACGAATTCCTGTGAAATTATGGCCTAGTATTTTTCCGAGCCCTTCTCAGATGACTCTTCTATTAGAGAGGTTCTTCAATTAAAGGGACGCTTCTAATACAGGTTTTACGGTAGATCGATTTGTTGAAG</canonical>
            <polymorphic>AATGAATATGAATATAGATAGAGATGTACCTCTTCTCACTTTCGCGTCCTCCAGTTTCTTTTTCCTCATTTTTTTTGGCTCCCAACAAATTTTGAGCACTAAAAGTTTAGACTTAAAAGAAACAGTTTTCTAAAAGTACATTTTGCAATTCGAAATACTTTATGTATAGGTTTTGAGTGATAACAGAAGACTGCATGGTTGGTCTTTTGGACTGATAAGAACTATTTTCTTTACGCGTTTTCTGGGTTTTTCCTAGCGGTGATTTTTCATCGATTTTCATTGAAATTATCAGCCTGTTTGCCGCGCCTCTGGCTCTTCAAACAGCTGGCTGGTGCGCCTTCGGCGCGATTTGACCTATTTATTTTAATGTTCGTCGCTTCGGTCCTCACTCTTTCCCGAAAGATCACGTCAATTTATATTTAATTTTCAAGCTTTTCAAAAATGTATGGACGGAAATAAAAATATGAAAATTCCAGCTAGTTTTTATGAGGAACGAAAGMTGAAAATGTCAGAAGTTAAAACCGAAAATATTGACCACTAGAATTCCACAAGACGCAGTACCGCGAAAGAAATGATATAATTATTGCATTTTTGGTAAAAGTGTACCGTAAACATTCTAATTGAACGATCCCTAATTTTAAAGAAAGTAGAAACCATTAAGAAAACTAAACATACAGTAAAACCTTTATTAGAAGGGCCAGCCTTTCTATTGTTTCAAGGTATCTAGAGAGAGCCCTTCTATTAGAGGGGCCCTTTTATTTTTCCGGTCATTTTTTTCCGAAATTTTTTATCAAAAATTAGGTGAATTTTCGCTGAGAATGCATGAATTTCACCAAAGTTAAGCAATTTTTTGAGTGGAAAAGAGTGTTCCAACGAATTCCTGTGAAATTATGGCCTAGTATTTTTCCGAGCCCTTCTCAGATGACTCTTCTATTAGAGAGGTTCTTCAATTAAAGGGACGCTTCTAATACAGGTTTTACGGTAGATCGATTTGTTGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGATTTTTCATCGATTTTCAT</pcr_primer_p1>
		<pcr_primer_p2>ACACTTTTACCAAAAATGCAATA</pcr_primer_p2>
		<pcr_amplicon_size>346</pcr_amplicon_size>
		<canonical_amplicon>GTGATTTTTCATCGATTTTCATTGAAATTATCAGCCTGTTTGCCGCGCCTCTGGCTCTTCAAACAGCTGGCTGGTGCGCCTTCGGCGCGATTTGACCTATTTATTTTAATGTTCGTCGCTTCGGTCCTCACTCTTTCCCGAAAGATCACGTCAATTTATATTTAATTTTCAAGCTTTTCAAAAATGTATGGACGGAAATAAAAATATGAAAATTCCAGCTAGTTTTTATGAGGAACGAAAGATGAAAATGTCAGAAGTTAAAACCGAAAATATTGACCACTAGAATTCCACAAGACGCAGTACCGCGAAAGAAATGATATAATTATTGCATTTTTGGTAAAAGTGT</canonical_amplicon>
		<polymorphic_amplicon>GTGATTTTTCATCGATTTTCATTGAAATTATCAGCCTGTTTGCCGCGCCTCTGGCTCTTCAAACAGCTGGCTGGTGCGCCTTCGGCGCGATTTGACCTATTTATTTTAATGTTCGTCGCTTCGGTCCTCACTCTTTCCCGAAAGATCACGTCAATTTATATTTAATTTTCAAGCTTTTCAAAAATGTATGGACGGAAATAAAAATATGAAAATTCCAGCTAGTTTTTATGAGGAACGAAAGMTGAAAATGTCAGAAGTTAAAACCGAAAATATTGACCACTAGAATTCCACAAGACGCAGTACCGCGAAAGAAATGATATAATTATTGCATTTTTGGTAAAAGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4484</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>534490</contig_pos>
        <strand>+</strand>
        <context>tacggtAATT[C/T]AAAATCTCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCAATGTTAAAAATTAGAGGGCTTTTCTATTACAGGTTTTACGGTAATT</left_flank>
        <right_flank>AAAATCTCAGTTCAGGTAAGCTTTTATTGAAGGGAATACGGTAAACTTGA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAGTTTGACATCTGAAAAGGTTTTGAGAGGTTCAAGTTCAAAAACGAAAATATCAGTTATCAATGAAATTTGAGATTCACCATATGTTCTAATAAAAGCCCACCCGAACCGTCAACTTTGAGCTCAATTGACTTGATTTCTGTAAAAGATATCAAAAATTTCTCAACTGATAAAATGTTTGTCATTCTTATAATAAATTAATGAAGTTGTGTCTCTTTCTCTGTGGATTTGTCCGCAGATTTTTTGAAAAGCTTGAAAATTAAATATACCGTGACCTTTTAAAAAGACAGAGGAGCGAAGCGACGATAAAGCAAAAAATAGATCAAATCGCGCCAAAGGCGCACCAGTCAGCTGTTTGAAGCGCCGGAGACGCGGCAAACAGGCTATGATAAACATTTCATCAGTCGACAACGTTTCGATATCTTTGACAGGAACCGAGAAAAATTAGATCAATGTTAAAAATTAGAGGGCTTTTCTATTACAGGTTTTACGGTAATTTAAAATCTCAGTTCAGGTAAGCTTTTATTGAAGGGAATACGGTAAACTTGATTGAGGACCTTTCGGAAGTTTTTCGATCATGCAAGTAATTACTTCTTCAGATACCAAATTCTTCATATTTTCCTATCATACCTGTCCGATTCTTTCATTGGATCCAACTCGATCGTAATCCGAAACGGTGACGTGGAGATGGACTCTCTGAAAAATTCAAATATTAGCCCCATACATTTGGCTCTATTTTACCATCATTTTCTCAGGAGTCACATCGAAACTGAACGATTCGTTATAGTATGGATTCAACGTCTTCATTTTAATCGTAGTCTTTTTCTTTTCCAAACGCTTCGTGCCCATCATCAAATAGATCTTCACATACGGATCTGACAATCCCAAGACGTCCATCTTCTTTAGATTCTTGCACTCCATAACCACGACCGATAGCTTGTTCTTGTTCGGAACATAACGAAGAGCTAGACATACTTCTCCTAAACGGTTTTCTGGTGG</canonical>
            <polymorphic>CAAGTTTGACATCTGAAAAGGTTTTGAGAGGTTCAAGTTCAAAAACGAAAATATCAGTTATCAATGAAATTTGAGATTCACCATATGTTCTAATAAAAGCCCACCCGAACCGTCAACTTTGAGCTCAATTGACTTGATTTCTGTAAAAGATATCAAAAATTTCTCAACTGATAAAATGTTTGTCATTCTTATAATAAATTAATGAAGTTGTGTCTCTTTCTCTGTGGATTTGTCCGCAGATTTTTTGAAAAGCTTGAAAATTAAATATACCGTGACCTTTTAAAAAGACAGAGGAGCGAAGCGACGATAAAGCAAAAAATAGATCAAATCGCGCCAAAGGCGCACCAGTCAGCTGTTTGAAGCGCCGGAGACGCGGCAAACAGGCTATGATAAACATTTCATCAGTCGACAACGTTTCGATATCTTTGACAGGAACCGAGAAAAATTAGATCAATGTTAAAAATTAGAGGGCTTTTCTATTACAGGTTTTACGGTAATTYAAAATCTCAGTTCAGGTAAGCTTTTATTGAAGGGAATACGGTAAACTTGATTGAGGACCTTTCGGAAGTTTTTCGATCATGCAAGTAATTACTTCTTCAGATACCAAATTCTTCATATTTTCCTATCATACCTGTCCGATTCTTTCATTGGATCCAACTCGATCGTAATCCGAAACGGTGACGTGGAGATGGACTCTCTGAAAAATTCAAATATTAGCCCCATACATTTGGCTCTATTTTACCATCATTTTCTCAGGAGTCACATCGAAACTGAACGATTCGTTATAGTATGGATTCAACGTCTTCATTTTAATCGTAGTCTTTTTCTTTTCCAAACGCTTCGTGCCCATCATCAAATAGATCTTCACATACGGATCTGACAATCCCAAGACGTCCATCTTCTTTAGATTCTTGCACTCCATAACCACGACCGATAGCTTGTTCTTGTTCGGAACATAACGAAGAGCTAGACATACTTCTCCTAAACGGTTTTCTGGTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 281 219</canonical_bands>
                <polymorphic_bands>719 281</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>311 199 190 177 62 42 19</canonical_bands>
                <polymorphic_bands>353 199 190 177 62 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGAAATTTGAGATTCACCATA</pcr_primer_p1>
		<pcr_primer_p2>CCTCAATCAAGTTTACCGTATT</pcr_primer_p2>
		<pcr_amplicon_size>494</pcr_amplicon_size>
		<canonical_amplicon>AATGAAATTTGAGATTCACCATATGTTCTAATAAAAGCCCACCCGAACCGTCAACTTTGAGCTCAATTGACTTGATTTCTGTAAAAGATATCAAAAATTTCTCAACTGATAAAATGTTTGTCATTCTTATAATAAATTAATGAAGTTGTGTCTCTTTCTCTGTGGATTTGTCCGCAGATTTTTTGAAAAGCTTGAAAATTAAATATACCGTGACCTTTTAAAAAGACAGAGGAGCGAAGCGACGATAAAGCAAAAAATAGATCAAATCGCGCCAAAGGCGCACCAGTCAGCTGTTTGAAGCGCCGGAGACGCGGCAAACAGGCTATGATAAACATTTCATCAGTCGACAACGTTTCGATATCTTTGACAGGAACCGAGAAAAATTAGATCAATGTTAAAAATTAGAGGGCTTTTCTATTACAGGTTTTACGGTAATTTAAAATCTCAGTTCAGGTAAGCTTTTATTGAAGGGAATACGGTAAACTTGATTGAGG</canonical_amplicon>
		<polymorphic_amplicon>AATGAAATTTGAGATTCACCATATGTTCTAATAAAAGCCCACCCGAACCGTCAACTTTGAGCTCAATTGACTTGATTTCTGTAAAAGATATCAAAAATTTCTCAACTGATAAAATGTTTGTCATTCTTATAATAAATTAATGAAGTTGTGTCTCTTTCTCTGTGGATTTGTCCGCAGATTTTTTGAAAAGCTTGAAAATTAAATATACCGTGACCTTTTAAAAAGACAGAGGAGCGAAGCGACGATAAAGCAAAAAATAGATCAAATCGCGCCAAAGGCGCACCAGTCAGCTGTTTGAAGCGCCGGAGACGCGGCAAACAGGCTATGATAAACATTTCATCAGTCGACAACGTTTCGATATCTTTGACAGGAACCGAGAAAAATTAGATCAATGTTAAAAATTAGAGGGCTTTTCTATTACAGGTTTTACGGTAATTYAAAATCTCAGTTCAGGTAAGCTTTTATTGAAGGGAATACGGTAAACTTGATTGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4485</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>534612</contig_pos>
        <strand>+</strand>
        <context>TTCATATTTT[C/T]CTATCATACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCGATCATGCAAGTAATTACTTCTTCAGATACCAAATTCTTCATATTTT</left_flank>
        <right_flank>CTATCATACCTGTCCGATTCTTTCATTGGATCCAACTCGATCGTAATCCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCAATTGACTTGATTTCTGTAAAAGATATCAAAAATTTCTCAACTGATAAAATGTTTGTCATTCTTATAATAAATTAATGAAGTTGTGTCTCTTTCTCTGTGGATTTGTCCGCAGATTTTTTGAAAAGCTTGAAAATTAAATATACCGTGACCTTTTAAAAAGACAGAGGAGCGAAGCGACGATAAAGCAAAAAATAGATCAAATCGCGCCAAAGGCGCACCAGTCAGCTGTTTGAAGCGCCGGAGACGCGGCAAACAGGCTATGATAAACATTTCATCAGTCGACAACGTTTCGATATCTTTGACAGGAACCGAGAAAAATTAGATCAATGTTAAAAATTAGAGGGCTTTTCTATTACAGGTTTTACGGTAATTTAAAATCTCAGTTCAGGTAAGCTTTTATTGAAGGGAATACGGTAAACTTGATTGAGGACCTTTCGGAAGTTTTTCGATCATGCAAGTAATTACTTCTTCAGATACCAAATTCTTCATATTTTCCTATCATACCTGTCCGATTCTTTCATTGGATCCAACTCGATCGTAATCCGAAACGGTGACGTGGAGATGGACTCTCTGAAAAATTCAAATATTAGCCCCATACATTTGGCTCTATTTTACCATCATTTTCTCAGGAGTCACATCGAAACTGAACGATTCGTTATAGTATGGATTCAACGTCTTCATTTTAATCGTAGTCTTTTTCTTTTCCAAACGCTTCGTGCCCATCATCAAATAGATCTTCACATACGGATCTGACAATCCCAAGACGTCCATCTTCTTTAGATTCTTGCACTCCATAACCACGACCGATAGCTTGTTCTTGTTCGGAACATAACGAAGAGCTAGACATACTTCTCCTAAACGGTTTTCTGGTGGACTTTCGATCAAATCGGTTTTCTCAATCGACGCTGCCAAGTCGATTTTTCCGAGTGGGATCGAGATTTGACCAATCTGAAAACGTTTGACTTTTTTCAAAAGGGCGTTGGTCTAGTCAGCGT</canonical>
            <polymorphic>GCTCAATTGACTTGATTTCTGTAAAAGATATCAAAAATTTCTCAACTGATAAAATGTTTGTCATTCTTATAATAAATTAATGAAGTTGTGTCTCTTTCTCTGTGGATTTGTCCGCAGATTTTTTGAAAAGCTTGAAAATTAAATATACCGTGACCTTTTAAAAAGACAGAGGAGCGAAGCGACGATAAAGCAAAAAATAGATCAAATCGCGCCAAAGGCGCACCAGTCAGCTGTTTGAAGCGCCGGAGACGCGGCAAACAGGCTATGATAAACATTTCATCAGTCGACAACGTTTCGATATCTTTGACAGGAACCGAGAAAAATTAGATCAATGTTAAAAATTAGAGGGCTTTTCTATTACAGGTTTTACGGTAATTTAAAATCTCAGTTCAGGTAAGCTTTTATTGAAGGGAATACGGTAAACTTGATTGAGGACCTTTCGGAAGTTTTTCGATCATGCAAGTAATTACTTCTTCAGATACCAAATTCTTCATATTTTYCTATCATACCTGTCCGATTCTTTCATTGGATCCAACTCGATCGTAATCCGAAACGGTGACGTGGAGATGGACTCTCTGAAAAATTCAAATATTAGCCCCATACATTTGGCTCTATTTTACCATCATTTTCTCAGGAGTCACATCGAAACTGAACGATTCGTTATAGTATGGATTCAACGTCTTCATTTTAATCGTAGTCTTTTTCTTTTCCAAACGCTTCGTGCCCATCATCAAATAGATCTTCACATACGGATCTGACAATCCCAAGACGTCCATCTTCTTTAGATTCTTGCACTCCATAACCACGACCGATAGCTTGTTCTTGTTCGGAACATAACGAAGAGCTAGACATACTTCTCCTAAACGGTTTTCTGGTGGACTTTCGATCAAATCGGTTTTCTCAATCGACGCTGCCAAGTCGATTTTTCCGAGTGGGATCGAGATTTGACCAATCTGAAAACGTTTGACTTTTTTCAAAAGGGCGTTGGTCTAGTCAGCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTCAGGTAAGCTTTTATTGA</pcr_primer_p1>
		<pcr_primer_p2>CCTGAGAAAATGATGGTAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGTTCAGGTAAGCTTTTATTGAAGGGAATACGGTAAACTTGATTGAGGACCTTTCGGAAGTTTTTCGATCATGCAAGTAATTACTTCTTCAGATACCAAATTCTTCATATTTTCCTATCATACCTGTCCGATTCTTTCATTGGATCCAACTCGATCGTAATCCGAAACGGTGACGTGGAGATGGACTCTCTGAAAAATTCAAATATTAGCCCCATACATTTGGCTCTATTTTACCATCATTTTCTCAGG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTCAGGTAAGCTTTTATTGAAGGGAATACGGTAAACTTGATTGAGGACCTTTCGGAAGTTTTTCGATCATGCAAGTAATTACTTCTTCAGATACCAAATTCTTCATATTTTYCTATCATACCTGTCCGATTCTTTCATTGGATCCAACTCGATCGTAATCCGAAACGGTGACGTGGAGATGGACTCTCTGAAAAATTCAAATATTAGCCCCATACATTTGGCTCTATTTTACCATCATTTTCTCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4486</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>537492</contig_pos>
        <strand>+</strand>
        <context>CTTCAARTTT[C/T]AGAATTTATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTATTTCTTGGAAGAAAAAGATTTGTGGAGTTTGTAAAACTTCAAGTTT</left_flank>
        <right_flank>AGAATTTATGAAATTCGCAAACTCTCTGTATTTGCTTAAATACCGTAACC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGACATTCTCATAAAAAATGTACTTTTAAGCGGAGGCGAGCTCCGGAAAGGTTTTATTAGATTTCAGTGGCTCGGAGAGGGGAAAAGAGAAAGGAGAGAGGGAAGAGCAATATTAGATTATTGCTTTTGGGGGATGGACTTGTGACTAATGTCACTTTTTGCAAGCGTTGGGTTTATTGGAAAATGAATTTTTTTCCAAAAATTTCAAGTTGGGCACCGTAAACACACTAAAAGATGCCCCCCCCCCTCCCCAAATAGTCCAGTTTAGGCAATATATCACATTTCCTGTAAAAGATAACATAAAGTTGTCAACTGAAAAATCTTTTTGATGTTACCTTGAACATTTTGTCAGTTGACTATTTTTGATCCATTTTACAGGAACCGAGATAAGTAGGCTCAAAAATGAAATTCCGGTGGTCATTCTATTAGAGTGGTTACGGATTTACATGTATTTCTTGGAAGAAAAAGATTTGTGGAGTTTGTAAAACTTCAAGTTTCAGAATTTATGAAATTCGCAAACTCTCTGTATTTGCTTAAATACCGTAACCACTCTAATAGAAGATCACTCTATGCTTGCACTTCGATCTAATTTATCCCACTTCTTGTGAAAGATATCAAAAAGTAGTCAATAGGTTTTTGATATTATGATGAACATATTATCAGTTGAACACTTTTTGATATCTTTCACAGAAACCGAAACAATTGAGTTCAAAATTAGAATTTACGGGTGGGGCATTCTAATACAGTGTTTGCGGTGGTTAGATTTGCTTAATCGTGACAAATAAGCGATTTCTTCAATTTTTGAATTACCGAAAATCTGAATACTATGAATTTTTCACACAAAATACATTGTTACATAACGAATTGACTTAAATACATCACAGGATAACCAGATGAACATAACGAGAAAAAACCAAAAAACGAGACGGAAATGAAAAAAAATTGAATGTAGCGTAGCAAAAAATATGTTGATGTGAAGAATGTGATACACATATCAT</canonical>
            <polymorphic>ATTGACATTCTCATAAAAAATGTACTTTTAAGCGGAGGCGAGCTCCGGAAAGGTTTTATTAGATTTCAGTGGCTCGGAGAGGGGAAAAGAGAAAGGAGAGAGGGAAGAGCAATATTAGATTATTGCTTTTGGGGGATGGACTTGTGACTAATGTCACTTTTTGCAAGCGTTGGGTTTATTGGAAAATGAATTTTTTTCCAAAAATTTCAAGTTGGGCACCGTAAACACACTAAAAGATGCCCCCCCCCCTCCCCAAATAGTCCAGTTTAGGCAATATATCACATTTCCTGTAAAAGATAACATAAAGTTGTCAACTGAAAAATCTTTTTGATGTTACCTTGAACATTTTGTCAGTTGACTATTTTTGATCCATTTTACAGGAACCGAGATAAGTAGGCTCAAAAATGAAATTCCGGTGGTCATTCTATTAGAGTGGTTACGGATTTACATGTATTTCTTGGAAGAAAAAGATTTGTGGAGTTTGTAAAACTTCAAGTTTYAGAATTTATGAAATTCGCAAACTCTCTGTATTTGCTTAAATACCGTAACCACTCTAATAGAAGATCACTCTATGCTTGCACTTCGATCTAATTTATCCCACTTCTTGTGAAAGATATCAAAAAGTAGTCAATAGGTTTTTGATATTATGATGAACATATTATCAGTTGAACACTTTTTGATATCTTTCACAGAAACCGAAACAATTGAGTTCAAAATTAGAATTTACGGGTGGGGCATTCTAATACAGTGTTTGCGGTGGTTAGATTTGCTTAATCGTGACAAATAAGCGATTTCTTCAATTTTTGAATTACCGAAAATCTGAATACTATGAATTTTTCACACAAAATACATTGTTACATAACGAATTGACTTAAATACATCACAGGATAACCAGATGAACATAACGAGAAAAAACCAAAAAACGAGACGGAAATGAAAAAAAATTGAATGTAGCGTAGCAAAAAATATGTTGATGTGAAGAATGTGATACACATATCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>425 320 179 76</canonical_bands>
                <polymorphic_bands>745 179 76</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCACCGTAAACACACTAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TCACGATTAAGCAAATCTAACC</pcr_primer_p2>
		<pcr_amplicon_size>565</pcr_amplicon_size>
		<canonical_amplicon>GCACCGTAAACACACTAAAAGATGCCCCCCCCCCTCCCCAAATAGTCCAGTTTAGGCAATATATCACATTTCCTGTAAAAGATAACATAAAGTTGTCAACTGAAAAATCTTTTTGATGTTACCTTGAACATTTTGTCAGTTGACTATTTTTGATCCATTTTACAGGAACCGAGATAAGTAGGCTCAAAAATGAAATTCCGGTGGTCATTCTATTAGAGTGGTTACGGATTTACATGTATTTCTTGGAAGAAAAAGATTTGTGGAGTTTGTAAAACTTCAAGTTTCAGAATTTATGAAATTCGCAAACTCTCTGTATTTGCTTAAATACCGTAACCACTCTAATAGAAGATCACTCTATGCTTGCACTTCGATCTAATTTATCCCACTTCTTGTGAAAGATATCAAAAAGTAGTCAATAGGTTTTTGATATTATGATGAACATATTATCAGTTGAACACTTTTTGATATCTTTCACAGAAACCGAAACAATTGAGTTCAAAATTAGAATTTACGGGTGGGGCATTCTAATACAGTGTTTGCGGTGGTTAGATTTGCTTAATCGTGA</canonical_amplicon>
		<polymorphic_amplicon>GCACCGTAAACACACTAAAAGATGCCCCCCCCCCTCCCCAAATAGTCCAGTTTAGGCAATATATCACATTTCCTGTAAAAGATAACATAAAGTTGTCAACTGAAAAATCTTTTTGATGTTACCTTGAACATTTTGTCAGTTGACTATTTTTGATCCATTTTACAGGAACCGAGATAAGTAGGCTCAAAAATGAAATTCCGGTGGTCATTCTATTAGAGTGGTTACGGATTTACATGTATTTCTTGGAAGAAAAAGATTTGTGGAGTTTGTAAAACTTCAAGTTTYAGAATTTATGAAATTCGCAAACTCTCTGTATTTGCTTAAATACCGTAACCACTCTAATAGAAGATCACTCTATGCTTGCACTTCGATCTAATTTATCCCACTTCTTGTGAAAGATATCAAAAAGTAGTCAATAGGTTTTTGATATTATGATGAACATATTATCAGTTGAACACTTTTTGATATCTTTCACAGAAACCGAAACAATTGAGTTCAAAATTAGAATTTACGGGTGGGGCATTCTAATACAGTGTTTGCGGTGGTTAGATTTGCTTAATCGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4487</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>537488</contig_pos>
        <strand>+</strand>
        <context>AAAACTTCAA[A/G]TTTYAGAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACATGTATTTCTTGGAAGAAAAAGATTTGTGGAGTTTGTAAAACTTCAA</left_flank>
        <right_flank>TTTCAGAATTTATGAAATTCGCAAACTCTCTGTATTTGCTTAAATACCGT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCATTGACATTCTCATAAAAAATGTACTTTTAAGCGGAGGCGAGCTCCGGAAAGGTTTTATTAGATTTCAGTGGCTCGGAGAGGGGAAAAGAGAAAGGAGAGAGGGAAGAGCAATATTAGATTATTGCTTTTGGGGGATGGACTTGTGACTAATGTCACTTTTTGCAAGCGTTGGGTTTATTGGAAAATGAATTTTTTTCCAAAAATTTCAAGTTGGGCACCGTAAACACACTAAAAGATGCCCCCCCCCCTCCCCAAATAGTCCAGTTTAGGCAATATATCACATTTCCTGTAAAAGATAACATAAAGTTGTCAACTGAAAAATCTTTTTGATGTTACCTTGAACATTTTGTCAGTTGACTATTTTTGATCCATTTTACAGGAACCGAGATAAGTAGGCTCAAAAATGAAATTCCGGTGGTCATTCTATTAGAGTGGTTACGGATTTACATGTATTTCTTGGAAGAAAAAGATTTGTGGAGTTTGTAAAACTTCAAGTTTCAGAATTTATGAAATTCGCAAACTCTCTGTATTTGCTTAAATACCGTAACCACTCTAATAGAAGATCACTCTATGCTTGCACTTCGATCTAATTTATCCCACTTCTTGTGAAAGATATCAAAAAGTAGTCAATAGGTTTTTGATATTATGATGAACATATTATCAGTTGAACACTTTTTGATATCTTTCACAGAAACCGAAACAATTGAGTTCAAAATTAGAATTTACGGGTGGGGCATTCTAATACAGTGTTTGCGGTGGTTAGATTTGCTTAATCGTGACAAATAAGCGATTTCTTCAATTTTTGAATTACCGAAAATCTGAATACTATGAATTTTTCACACAAAATACATTGTTACATAACGAATTGACTTAAATACATCACAGGATAACCAGATGAACATAACGAGAAAAAACCAAAAAACGAGACGGAAATGAAAAAAAATTGAATGTAGCGTAGCAAAAAATATGTTGATGTGAAGAATGTGATACACATA</canonical>
            <polymorphic>TCTCATTGACATTCTCATAAAAAATGTACTTTTAAGCGGAGGCGAGCTCCGGAAAGGTTTTATTAGATTTCAGTGGCTCGGAGAGGGGAAAAGAGAAAGGAGAGAGGGAAGAGCAATATTAGATTATTGCTTTTGGGGGATGGACTTGTGACTAATGTCACTTTTTGCAAGCGTTGGGTTTATTGGAAAATGAATTTTTTTCCAAAAATTTCAAGTTGGGCACCGTAAACACACTAAAAGATGCCCCCCCCCCTCCCCAAATAGTCCAGTTTAGGCAATATATCACATTTCCTGTAAAAGATAACATAAAGTTGTCAACTGAAAAATCTTTTTGATGTTACCTTGAACATTTTGTCAGTTGACTATTTTTGATCCATTTTACAGGAACCGAGATAAGTAGGCTCAAAAATGAAATTCCGGTGGTCATTCTATTAGAGTGGTTACGGATTTACATGTATTTCTTGGAAGAAAAAGATTTGTGGAGTTTGTAAAACTTCAARTTTCAGAATTTATGAAATTCGCAAACTCTCTGTATTTGCTTAAATACCGTAACCACTCTAATAGAAGATCACTCTATGCTTGCACTTCGATCTAATTTATCCCACTTCTTGTGAAAGATATCAAAAAGTAGTCAATAGGTTTTTGATATTATGATGAACATATTATCAGTTGAACACTTTTTGATATCTTTCACAGAAACCGAAACAATTGAGTTCAAAATTAGAATTTACGGGTGGGGCATTCTAATACAGTGTTTGCGGTGGTTAGATTTGCTTAATCGTGACAAATAAGCGATTTCTTCAATTTTTGAATTACCGAAAATCTGAATACTATGAATTTTTCACACAAAATACATTGTTACATAACGAATTGACTTAAATACATCACAGGATAACCAGATGAACATAACGAGAAAAAACCAAAAAACGAGACGGAAATGAAAAAAAATTGAATGTAGCGTAGCAAAAAATATGTTGATGTGAAGAATGTGATACACATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCACCGTAAACACACTAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TCACGATTAAGCAAATCTAACC</pcr_primer_p2>
		<pcr_amplicon_size>565</pcr_amplicon_size>
		<canonical_amplicon>GCACCGTAAACACACTAAAAGATGCCCCCCCCCCTCCCCAAATAGTCCAGTTTAGGCAATATATCACATTTCCTGTAAAAGATAACATAAAGTTGTCAACTGAAAAATCTTTTTGATGTTACCTTGAACATTTTGTCAGTTGACTATTTTTGATCCATTTTACAGGAACCGAGATAAGTAGGCTCAAAAATGAAATTCCGGTGGTCATTCTATTAGAGTGGTTACGGATTTACATGTATTTCTTGGAAGAAAAAGATTTGTGGAGTTTGTAAAACTTCAAGTTTCAGAATTTATGAAATTCGCAAACTCTCTGTATTTGCTTAAATACCGTAACCACTCTAATAGAAGATCACTCTATGCTTGCACTTCGATCTAATTTATCCCACTTCTTGTGAAAGATATCAAAAAGTAGTCAATAGGTTTTTGATATTATGATGAACATATTATCAGTTGAACACTTTTTGATATCTTTCACAGAAACCGAAACAATTGAGTTCAAAATTAGAATTTACGGGTGGGGCATTCTAATACAGTGTTTGCGGTGGTTAGATTTGCTTAATCGTGA</canonical_amplicon>
		<polymorphic_amplicon>GCACCGTAAACACACTAAAAGATGCCCCCCCCCCTCCCCAAATAGTCCAGTTTAGGCAATATATCACATTTCCTGTAAAAGATAACATAAAGTTGTCAACTGAAAAATCTTTTTGATGTTACCTTGAACATTTTGTCAGTTGACTATTTTTGATCCATTTTACAGGAACCGAGATAAGTAGGCTCAAAAATGAAATTCCGGTGGTCATTCTATTAGAGTGGTTACGGATTTACATGTATTTCTTGGAAGAAAAAGATTTGTGGAGTTTGTAAAACTTCAARTTTCAGAATTTATGAAATTCGCAAACTCTCTGTATTTGCTTAAATACCGTAACCACTCTAATAGAAGATCACTCTATGCTTGCACTTCGATCTAATTTATCCCACTTCTTGTGAAAGATATCAAAAAGTAGTCAATAGGTTTTTGATATTATGATGAACATATTATCAGTTGAACACTTTTTGATATCTTTCACAGAAACCGAAACAATTGAGTTCAAAATTAGAATTTACGGGTGGGGCATTCTAATACAGTGTTTGCGGTGGTTAGATTTGCTTAATCGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4488</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>537444</contig_pos>
        <strand>+</strand>
        <context>gATTTACATG[A/T]ATTTCTTGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATGAAATTCCGGTGGTCATTCTATTAGAGTGGTTACGGATTTACATG</left_flank>
        <right_flank>ATTTCTTGGAAGAAAAAGATTTGTGGAGTTTGTAAAACTTCAAGTTTCAG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTATTTTTTGTGTGTATGTGTGTTTCTCCCTTCTTGTATCTCTCTCATTGACATTCTCATAAAAAATGTACTTTTAAGCGGAGGCGAGCTCCGGAAAGGTTTTATTAGATTTCAGTGGCTCGGAGAGGGGAAAAGAGAAAGGAGAGAGGGAAGAGCAATATTAGATTATTGCTTTTGGGGGATGGACTTGTGACTAATGTCACTTTTTGCAAGCGTTGGGTTTATTGGAAAATGAATTTTTTTCCAAAAATTTCAAGTTGGGCACCGTAAACACACTAAAAGATGCCCCCCCCCCTCCCCAAATAGTCCAGTTTAGGCAATATATCACATTTCCTGTAAAAGATAACATAAAGTTGTCAACTGAAAAATCTTTTTGATGTTACCTTGAACATTTTGTCAGTTGACTATTTTTGATCCATTTTACAGGAACCGAGATAAGTAGGCTCAAAAATGAAATTCCGGTGGTCATTCTATTAGAGTGGTTACGGATTTACATGTATTTCTTGGAAGAAAAAGATTTGTGGAGTTTGTAAAACTTCAAGTTTCAGAATTTATGAAATTCGCAAACTCTCTGTATTTGCTTAAATACCGTAACCACTCTAATAGAAGATCACTCTATGCTTGCACTTCGATCTAATTTATCCCACTTCTTGTGAAAGATATCAAAAAGTAGTCAATAGGTTTTTGATATTATGATGAACATATTATCAGTTGAACACTTTTTGATATCTTTCACAGAAACCGAAACAATTGAGTTCAAAATTAGAATTTACGGGTGGGGCATTCTAATACAGTGTTTGCGGTGGTTAGATTTGCTTAATCGTGACAAATAAGCGATTTCTTCAATTTTTGAATTACCGAAAATCTGAATACTATGAATTTTTCACACAAAATACATTGTTACATAACGAATTGACTTAAATACATCACAGGATAACCAGATGAACATAACGAGAAAAAACCAAAAAACGAGACGGAAATGAAAAAAAATTGAATGT</canonical>
            <polymorphic>CTTTATTTTTTGTGTGTATGTGTGTTTCTCCCTTCTTGTATCTCTCTCATTGACATTCTCATAAAAAATGTACTTTTAAGCGGAGGCGAGCTCCGGAAAGGTTTTATTAGATTTCAGTGGCTCGGAGAGGGGAAAAGAGAAAGGAGAGAGGGAAGAGCAATATTAGATTATTGCTTTTGGGGGATGGACTTGTGACTAATGTCACTTTTTGCAAGCGTTGGGTTTATTGGAAAATGAATTTTTTTCCAAAAATTTCAAGTTGGGCACCGTAAACACACTAAAAGATGCCCCCCCCCCTCCCCAAATAGTCCAGTTTAGGCAATATATCACATTTCCTGTAAAAGATAACATAAAGTTGTCAACTGAAAAATCTTTTTGATGTTACCTTGAACATTTTGTCAGTTGACTATTTTTGATCCATTTTACAGGAACCGAGATAAGTAGGCTCAAAAATGAAATTCCGGTGGTCATTCTATTAGAGTGGTTACGGATTTACATGWATTTCTTGGAAGAAAAAGATTTGTGGAGTTTGTAAAACTTCAAGTTTCAGAATTTATGAAATTCGCAAACTCTCTGTATTTGCTTAAATACCGTAACCACTCTAATAGAAGATCACTCTATGCTTGCACTTCGATCTAATTTATCCCACTTCTTGTGAAAGATATCAAAAAGTAGTCAATAGGTTTTTGATATTATGATGAACATATTATCAGTTGAACACTTTTTGATATCTTTCACAGAAACCGAAACAATTGAGTTCAAAATTAGAATTTACGGGTGGGGCATTCTAATACAGTGTTTGCGGTGGTTAGATTTGCTTAATCGTGACAAATAAGCGATTTCTTCAATTTTTGAATTACCGAAAATCTGAATACTATGAATTTTTCACACAAAATACATTGTTACATAACGAATTGACTTAAATACATCACAGGATAACCAGATGAACATAACGAGAAAAAACCAAAAAACGAGACGGAAATGAAAAAAAATTGAATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCACCGTAAACACACTAAAAG</pcr_primer_p1>
		<pcr_primer_p2>AGAGAGTTTGCGAATTTCATA</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>GCACCGTAAACACACTAAAAGATGCCCCCCCCCCTCCCCAAATAGTCCAGTTTAGGCAATATATCACATTTCCTGTAAAAGATAACATAAAGTTGTCAACTGAAAAATCTTTTTGATGTTACCTTGAACATTTTGTCAGTTGACTATTTTTGATCCATTTTACAGGAACCGAGATAAGTAGGCTCAAAAATGAAATTCCGGTGGTCATTCTATTAGAGTGGTTACGGATTTACATGTATTTCTTGGAAGAAAAAGATTTGTGGAGTTTGTAAAACTTCAAGTTTCAGAATTTATGAAATTCGCAAACTCTCT</canonical_amplicon>
		<polymorphic_amplicon>GCACCGTAAACACACTAAAAGATGCCCCCCCCCCTCCCCAAATAGTCCAGTTTAGGCAATATATCACATTTCCTGTAAAAGATAACATAAAGTTGTCAACTGAAAAATCTTTTTGATGTTACCTTGAACATTTTGTCAGTTGACTATTTTTGATCCATTTTACAGGAACCGAGATAAGTAGGCTCAAAAATGAAATTCCGGTGGTCATTCTATTAGAGTGGTTACGGATTTACATGWATTTCTTGGAAGAAAAAGATTTGTGGAGTTTGTAAAACTTCAAGTTTCAGAATTTATGAAATTCGCAAACTCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4489</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>630083</contig_pos>
        <strand>+</strand>
        <context>AAAAAAAGTA[A/G]GTCACGTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCTTTCAGGCGCTTTTTACATGAATATTTTATGACGTGGAAAAAAAGTA</left_flank>
        <right_flank>GTCACGTGAATATTTGAATTTAAAGTTTTCACCTAACCGTGTCGCATTAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATACACACTTTCATTTATTCTCCTTCTCACTCTCTCCTCTATTAAAATTCAAATTTTCGGATTACGTGCCCAGCGCTACCGAGGCTTAATGCCCTGTCGAAACCAGTGCGTCGCAAAAAAATACGAAGAAATTGGAGAAAGTTTTACGGTTTTTTTTTGCATGATGAAGAAACGGATGTTTTTCTAACGCGGAAGGAAAACAACGAAAAGAAACTGAGAATGATGGGCAAATACAATGAGCTCGTGGGCAAGAAGGAGATGGTTTTGACAGTGCTGCGGACAGGGGGTTTGAAACAAGGATCCTTGTTTTGTTACGTGAATATTACCGACATGCTAAAGGAAATCCAAGTGAGAATTTTTGAATTTTTTGCCACGTCATAAAATATTCACTTGAAAACGAGTCCCATATTAAATACGTAATATTGTTTCACGTATTTATTATAGAACTCTCTTTCAGGCGCTTTTTACATGAATATTTTATGACGTGGAAAAAAAGTAGGTCACGTGAATATTTGAATTTAAAGTTTTCACCTAACCGTGTCGCATTAATTATTGCCATAAAGAATAAATAGTATAATAAAAATTTAGCACGCGCCACAGTTGGCATATGTAATACCTATAACACCAGAATCACCCGAGATTCAGATGGCATTGAAACGCACTTGTCCTTTCCTACCTTTCCTATTCGTGTATTCTTCTCATTTACTTTGGCACTTTCGACTTCTCGCCCAGAAACATGGCCAATTACTGCACTAATTATTTCGTCGTCTCATTACCTGTGTTTGATTTGAAGTGGAGGGAGGAGAATGTCTAGGAAAAGCTGCCTCAAGGTTGGAAACGGGGAACAATAGTACAGAAGAAGGGATTATGATAATGGGGTAAACGATTACAGAAGTGATAATCTCCGAAAACCCGGGGAGAGGGTATATCGTGCGGAAAATGATTTACTTCTTTTTTAGGAGCGAAAGTGGAGGTTCGCATTTCACTTGTAACTGAATA</canonical>
            <polymorphic>TATACACACTTTCATTTATTCTCCTTCTCACTCTCTCCTCTATTAAAATTCAAATTTTCGGATTACGTGCCCAGCGCTACCGAGGCTTAATGCCCTGTCGAAACCAGTGCGTCGCAAAAAAATACGAAGAAATTGGAGAAAGTTTTACGGTTTTTTTTTGCATGATGAAGAAACGGATGTTTTTCTAACGCGGAAGGAAAACAACGAAAAGAAACTGAGAATGATGGGCAAATACAATGAGCTCGTGGGCAAGAAGGAGATGGTTTTGACAGTGCTGCGGACAGGGGGTTTGAAACAAGGATCCTTGTTTTGTTACGTGAATATTACCGACATGCTAAAGGAAATCCAAGTGAGAATTTTTGAATTTTTTGCCACGTCATAAAATATTCACTTGAAAACGAGTCCCATATTAAATACGTAATATTGTTTCACGTATTTATTATAGAACTCTCTTTCAGGCGCTTTTTACATGAATATTTTATGACGTGGAAAAAAAGTARGTCACGTGAATATTTGAATTTAAAGTTTTCACCTAACCGTGTCGCATTAATTATTGCCATAAAGAATAAATAGTATAATAAAAATTTAGCACGCGCCACAGTTGGCATATGTAATACCTATAACACCAGAATCACCCGAGATTCAGATGGCATTGAAACGCACTTGTCCTTTCCTACCTTTCCTATTCGTGTATTCTTCTCATTTACTTTGGCACTTTCGACTTCTCGCCCAGAAACATGGCCAATTACTGCACTAATTATTTCGTCGTCTCATTACCTGTGTTTGATTTGAAGTGGAGGGAGGAGAATGTCTAGGAAAAGCTGCCTCAAGGTTGGAAACGGGGAACAATAGTACAGAAGAAGGGATTATGATAATGGGGTAAACGATTACAGAAGTGATAATCTCCGAAAACCCGGGGAGAGGGTATATCGTGCGGAAAATGATTTACTTCTTTTTTAGGAGCGAAAGTGGAGGTTCGCATTTCACTTGTAACTGAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGTGAGAATTTTTGAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CGCGTGCTAAATTTTTATTATAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAGTGAGAATTTTTGAATTTTTTGCCACGTCATAAAATATTCACTTGAAAACGAGTCCCATATTAAATACGTAATATTGTTTCACGTATTTATTATAGAACTCTCTTTCAGGCGCTTTTTACATGAATATTTTATGACGTGGAAAAAAAGTAGGTCACGTGAATATTTGAATTTAAAGTTTTCACCTAACCGTGTCGCATTAATTATTGCCATAAAGAATAAATAGTATAATAAAAATTTAGCACGCG</canonical_amplicon>
		<polymorphic_amplicon>CAAGTGAGAATTTTTGAATTTTTTGCCACGTCATAAAATATTCACTTGAAAACGAGTCCCATATTAAATACGTAATATTGTTTCACGTATTTATTATAGAACTCTCTTTCAGGCGCTTTTTACATGAATATTTTATGACGTGGAAAAAAAGTARGTCACGTGAATATTTGAATTTAAAGTTTTCACCTAACCGTGTCGCATTAATTATTGCCATAAAGAATAAATAGTATAATAAAAATTTAGCACGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4490</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>630147</contig_pos>
        <strand>+</strand>
        <context>TTGCCATAAA[C/G]AATAAATAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTGAATTTAAAGTTTTCACCTAACCGTGTCGCATTAATTATTGCCATAAA</left_flank>
        <right_flank>AATAAATAGTATAATAAAAATTTAGCACGCGCCACAGTTGGCATATGTAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGTGCCCAGCGCTACCGAGGCTTAATGCCCTGTCGAAACCAGTGCGTCGCAAAAAAATACGAAGAAATTGGAGAAAGTTTTACGGTTTTTTTTTGCATGATGAAGAAACGGATGTTTTTCTAACGCGGAAGGAAAACAACGAAAAGAAACTGAGAATGATGGGCAAATACAATGAGCTCGTGGGCAAGAAGGAGATGGTTTTGACAGTGCTGCGGACAGGGGGTTTGAAACAAGGATCCTTGTTTTGTTACGTGAATATTACCGACATGCTAAAGGAAATCCAAGTGAGAATTTTTGAATTTTTTGCCACGTCATAAAATATTCACTTGAAAACGAGTCCCATATTAAATACGTAATATTGTTTCACGTATTTATTATAGAACTCTCTTTCAGGCGCTTTTTACATGAATATTTTATGACGTGGAAAAAAAGTAGGTCACGTGAATATTTGAATTTAAAGTTTTCACCTAACCGTGTCGCATTAATTATTGCCATAAAGAATAAATAGTATAATAAAAATTTAGCACGCGCCACAGTTGGCATATGTAATACCTATAACACCAGAATCACCCGAGATTCAGATGGCATTGAAACGCACTTGTCCTTTCCTACCTTTCCTATTCGTGTATTCTTCTCATTTACTTTGGCACTTTCGACTTCTCGCCCAGAAACATGGCCAATTACTGCACTAATTATTTCGTCGTCTCATTACCTGTGTTTGATTTGAAGTGGAGGGAGGAGAATGTCTAGGAAAAGCTGCCTCAAGGTTGGAAACGGGGAACAATAGTACAGAAGAAGGGATTATGATAATGGGGTAAACGATTACAGAAGTGATAATCTCCGAAAACCCGGGGAGAGGGTATATCGTGCGGAAAATGATTTACTTCTTTTTTAGGAGCGAAAGTGGAGGTTCGCATTTCACTTGTAACTGAATACCCACTTTTACATATAAAATATGCAAGTAAACAGCTAATACTTTTTTTCTGTTTGAAATGGCAA</canonical>
            <polymorphic>ACGTGCCCAGCGCTACCGAGGCTTAATGCCCTGTCGAAACCAGTGCGTCGCAAAAAAATACGAAGAAATTGGAGAAAGTTTTACGGTTTTTTTTTGCATGATGAAGAAACGGATGTTTTTCTAACGCGGAAGGAAAACAACGAAAAGAAACTGAGAATGATGGGCAAATACAATGAGCTCGTGGGCAAGAAGGAGATGGTTTTGACAGTGCTGCGGACAGGGGGTTTGAAACAAGGATCCTTGTTTTGTTACGTGAATATTACCGACATGCTAAAGGAAATCCAAGTGAGAATTTTTGAATTTTTTGCCACGTCATAAAATATTCACTTGAAAACGAGTCCCATATTAAATACGTAATATTGTTTCACGTATTTATTATAGAACTCTCTTTCAGGCGCTTTTTACATGAATATTTTATGACGTGGAAAAAAAGTAGGTCACGTGAATATTTGAATTTAAAGTTTTCACCTAACCGTGTCGCATTAATTATTGCCATAAASAATAAATAGTATAATAAAAATTTAGCACGCGCCACAGTTGGCATATGTAATACCTATAACACCAGAATCACCCGAGATTCAGATGGCATTGAAACGCACTTGTCCTTTCCTACCTTTCCTATTCGTGTATTCTTCTCATTTACTTTGGCACTTTCGACTTCTCGCCCAGAAACATGGCCAATTACTGCACTAATTATTTCGTCGTCTCATTACCTGTGTTTGATTTGAAGTGGAGGGAGGAGAATGTCTAGGAAAAGCTGCCTCAAGGTTGGAAACGGGGAACAATAGTACAGAAGAAGGGATTATGATAATGGGGTAAACGATTACAGAAGTGATAATCTCCGAAAACCCGGGGAGAGGGTATATCGTGCGGAAAATGATTTACTTCTTTTTTAGGAGCGAAAGTGGAGGTTCGCATTTCACTTGTAACTGAATACCCACTTTTACATATAAAATATGCAAGTAAACAGCTAATACTTTTTTTCTGTTTGAAATGGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGCTTTTTACATGAATATTTTA</pcr_primer_p1>
		<pcr_primer_p2>ATGAGAAGAATACACGAATAGGA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GCGCTTTTTACATGAATATTTTATGACGTGGAAAAAAAGTAGGTCACGTGAATATTTGAATTTAAAGTTTTCACCTAACCGTGTCGCATTAATTATTGCCATAAAGAATAAATAGTATAATAAAAATTTAGCACGCGCCACAGTTGGCATATGTAATACCTATAACACCAGAATCACCCGAGATTCAGATGGCATTGAAACGCACTTGTCCTTTCCTACCTTTCCTATTCGTGTATTCTTCTCAT</canonical_amplicon>
		<polymorphic_amplicon>GCGCTTTTTACATGAATATTTTATGACGTGGAAAAAAAGTAGGTCACGTGAATATTTGAATTTAAAGTTTTCACCTAACCGTGTCGCATTAATTATTGCCATAAASAATAAATAGTATAATAAAAATTTAGCACGCGCCACAGTTGGCATATGTAATACCTATAACACCAGAATCACCCGAGATTCAGATGGCATTGAAACGCACTTGTCCTTTCCTACCTTTCCTATTCGTGTATTCTTCTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4491</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>630377</contig_pos>
        <strand>+</strand>
        <context>TTGATTTGAA[A/G]TGGAGGGAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTACTGCACTAATTATTTCGTCGTCTCATTACCTGTGTTTGATTTGAA</left_flank>
        <right_flank>TGGAGGGAGGAGAATGTCTAGGAAAAGCTGCCTCAAGGTTGGAAACGGGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAAGGATCCTTGTTTTGTTACGTGAATATTACCGACATGCTAAAGGAAATCCAAGTGAGAATTTTTGAATTTTTTGCCACGTCATAAAATATTCACTTGAAAACGAGTCCCATATTAAATACGTAATATTGTTTCACGTATTTATTATAGAACTCTCTTTCAGGCGCTTTTTACATGAATATTTTATGACGTGGAAAAAAAGTAGGTCACGTGAATATTTGAATTTAAAGTTTTCACCTAACCGTGTCGCATTAATTATTGCCATAAAGAATAAATAGTATAATAAAAATTTAGCACGCGCCACAGTTGGCATATGTAATACCTATAACACCAGAATCACCCGAGATTCAGATGGCATTGAAACGCACTTGTCCTTTCCTACCTTTCCTATTCGTGTATTCTTCTCATTTACTTTGGCACTTTCGACTTCTCGCCCAGAAACATGGCCAATTACTGCACTAATTATTTCGTCGTCTCATTACCTGTGTTTGATTTGAAGTGGAGGGAGGAGAATGTCTAGGAAAAGCTGCCTCAAGGTTGGAAACGGGGAACAATAGTACAGAAGAAGGGATTATGATAATGGGGTAAACGATTACAGAAGTGATAATCTCCGAAAACCCGGGGAGAGGGTATATCGTGCGGAAAATGATTTACTTCTTTTTTAGGAGCGAAAGTGGAGGTTCGCATTTCACTTGTAACTGAATACCCACTTTTACATATAAAATATGCAAGTAAACAGCTAATACTTTTTTTCTGTTTGAAATGGCAATGAGACCTTCGGCAACGCTCATTACCGGAAACGGGAAGATCCAGTTGTTCGACACTGTTAACGGGAAGTCAATTAGCTGAAAGTCTTGAAAAGAATGATGTCTCAATGACACATTTTAAAATCAACAGTTTTTGTTCTTTTCAACAAAGTATCGGATTTTTTGTTCAGAGTTTACAAGGAGGACACCAGATCAATTTTTTCAGGATTAATCGGAATCGCCAATTCAGGTG</canonical>
            <polymorphic>ACAAGGATCCTTGTTTTGTTACGTGAATATTACCGACATGCTAAAGGAAATCCAAGTGAGAATTTTTGAATTTTTTGCCACGTCATAAAATATTCACTTGAAAACGAGTCCCATATTAAATACGTAATATTGTTTCACGTATTTATTATAGAACTCTCTTTCAGGCGCTTTTTACATGAATATTTTATGACGTGGAAAAAAAGTAGGTCACGTGAATATTTGAATTTAAAGTTTTCACCTAACCGTGTCGCATTAATTATTGCCATAAAGAATAAATAGTATAATAAAAATTTAGCACGCGCCACAGTTGGCATATGTAATACCTATAACACCAGAATCACCCGAGATTCAGATGGCATTGAAACGCACTTGTCCTTTCCTACCTTTCCTATTCGTGTATTCTTCTCATTTACTTTGGCACTTTCGACTTCTCGCCCAGAAACATGGCCAATTACTGCACTAATTATTTCGTCGTCTCATTACCTGTGTTTGATTTGAARTGGAGGGAGGAGAATGTCTAGGAAAAGCTGCCTCAAGGTTGGAAACGGGGAACAATAGTACAGAAGAAGGGATTATGATAATGGGGTAAACGATTACAGAAGTGATAATCTCCGAAAACCCGGGGAGAGGGTATATCGTGCGGAAAATGATTTACTTCTTTTTTAGGAGCGAAAGTGGAGGTTCGCATTTCACTTGTAACTGAATACCCACTTTTACATATAAAATATGCAAGTAAACAGCTAATACTTTTTTTCTGTTTGAAATGGCAATGAGACCTTCGGCAACGCTCATTACCGGAAACGGGAAGATCCAGTTGTTCGACACTGTTAACGGGAAGTCAATTAGCTGAAAGTCTTGAAAAGAATGATGTCTCAATGACACATTTTAAAATCAACAGTTTTTGTTCTTTTCAACAAAGTATCGGATTTTTTGTTCAGAGTTTACAAGGAGGACACCAGATCAATTTTTTCAGGATTAATCGGAATCGCCAATTCAGGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>114 102 74 57 57 50 45 41 39 37 36 33 29 29 28 27 25 23 23 22 18 16 16 15 14 10 9 7 4 0</canonical_bands>
                <polymorphic_bands>116 114 74 57 57 50 45 41 39 37 36 33 29 29 28 27 25 23 23 22 18 16 16 15 10 9 7 4 0</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATACCTATAACACCAGAATCACC</pcr_primer_p1>
		<pcr_primer_p2>CCCTTCTTCTGTACTATTGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AATACCTATAACACCAGAATCACCCGAGATTCAGATGGCATTGAAACGCACTTGTCCTTTCCTACCTTTCCTATTCGTGTATTCTTCTCATTTACTTTGGCACTTTCGACTTCTCGCCCAGAAACATGGCCAATTACTGCACTAATTATTTCGTCGTCTCATTACCTGTGTTTGATTTGAAGTGGAGGGAGGAGAATGTCTAGGAAAAGCTGCCTCAAGGTTGGAAACGGGGAACAATAGTACAGAAGAAGGG</canonical_amplicon>
		<polymorphic_amplicon>AATACCTATAACACCAGAATCACCCGAGATTCAGATGGCATTGAAACGCACTTGTCCTTTCCTACCTTTCCTATTCGTGTATTCTTCTCATTTACTTTGGCACTTTCGACTTCTCGCCCAGAAACATGGCCAATTACTGCACTAATTATTTCGTCGTCTCATTACCTGTGTTTGATTTGAARTGGAGGGAGGAGAATGTCTAGGAAAAGCTGCCTCAAGGTTGGAAACGGGGAACAATAGTACAGAAGAAGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4492</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>630473</contig_pos>
        <strand>+</strand>
        <context>GTAAACGATT[A/T]CAGAAGTGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGGGGAACAATAGTACAGAAGAAGGGATTATGATAATGGGGTAAACGATT</left_flank>
        <right_flank>CAGAAGTGATAATCTCCGAAAACCCGGGGAGAGGGTATATCGTGCGGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGAAAACGAGTCCCATATTAAATACGTAATATTGTTTCACGTATTTATTATAGAACTCTCTTTCAGGCGCTTTTTACATGAATATTTTATGACGTGGAAAAAAAGTAGGTCACGTGAATATTTGAATTTAAAGTTTTCACCTAACCGTGTCGCATTAATTATTGCCATAAAGAATAAATAGTATAATAAAAATTTAGCACGCGCCACAGTTGGCATATGTAATACCTATAACACCAGAATCACCCGAGATTCAGATGGCATTGAAACGCACTTGTCCTTTCCTACCTTTCCTATTCGTGTATTCTTCTCATTTACTTTGGCACTTTCGACTTCTCGCCCAGAAACATGGCCAATTACTGCACTAATTATTTCGTCGTCTCATTACCTGTGTTTGATTTGAAGTGGAGGGAGGAGAATGTCTAGGAAAAGCTGCCTCAAGGTTGGAAACGGGGAACAATAGTACAGAAGAAGGGATTATGATAATGGGGTAAACGATTACAGAAGTGATAATCTCCGAAAACCCGGGGAGAGGGTATATCGTGCGGAAAATGATTTACTTCTTTTTTAGGAGCGAAAGTGGAGGTTCGCATTTCACTTGTAACTGAATACCCACTTTTACATATAAAATATGCAAGTAAACAGCTAATACTTTTTTTCTGTTTGAAATGGCAATGAGACCTTCGGCAACGCTCATTACCGGAAACGGGAAGATCCAGTTGTTCGACACTGTTAACGGGAAGTCAATTAGCTGAAAGTCTTGAAAAGAATGATGTCTCAATGACACATTTTAAAATCAACAGTTTTTGTTCTTTTCAACAAAGTATCGGATTTTTTGTTCAGAGTTTACAAGGAGGACACCAGATCAATTTTTTCAGGATTAATCGGAATCGCCAATTCAGGTGGCAACTAAACCCTCTTCTCTATTCAAATTTTCATTCATTTCTCCGGAATATCTGAAATTCATTCACACTTGTCTGTTGTTGTTGTTGAGAATTAAA</canonical>
            <polymorphic>CTTGAAAACGAGTCCCATATTAAATACGTAATATTGTTTCACGTATTTATTATAGAACTCTCTTTCAGGCGCTTTTTACATGAATATTTTATGACGTGGAAAAAAAGTAGGTCACGTGAATATTTGAATTTAAAGTTTTCACCTAACCGTGTCGCATTAATTATTGCCATAAAGAATAAATAGTATAATAAAAATTTAGCACGCGCCACAGTTGGCATATGTAATACCTATAACACCAGAATCACCCGAGATTCAGATGGCATTGAAACGCACTTGTCCTTTCCTACCTTTCCTATTCGTGTATTCTTCTCATTTACTTTGGCACTTTCGACTTCTCGCCCAGAAACATGGCCAATTACTGCACTAATTATTTCGTCGTCTCATTACCTGTGTTTGATTTGAAGTGGAGGGAGGAGAATGTCTAGGAAAAGCTGCCTCAAGGTTGGAAACGGGGAACAATAGTACAGAAGAAGGGATTATGATAATGGGGTAAACGATTWCAGAAGTGATAATCTCCGAAAACCCGGGGAGAGGGTATATCGTGCGGAAAATGATTTACTTCTTTTTTAGGAGCGAAAGTGGAGGTTCGCATTTCACTTGTAACTGAATACCCACTTTTACATATAAAATATGCAAGTAAACAGCTAATACTTTTTTTCTGTTTGAAATGGCAATGAGACCTTCGGCAACGCTCATTACCGGAAACGGGAAGATCCAGTTGTTCGACACTGTTAACGGGAAGTCAATTAGCTGAAAGTCTTGAAAAGAATGATGTCTCAATGACACATTTTAAAATCAACAGTTTTTGTTCTTTTCAACAAAGTATCGGATTTTTTGTTCAGAGTTTACAAGGAGGACACCAGATCAATTTTTTCAGGATTAATCGGAATCGCCAATTCAGGTGGCAACTAAACCCTCTTCTCTATTCAAATTTTCATTCATTTCTCCGGAATATCTGAAATTCATTCACACTTGTCTGTTGTTGTTGTTGAGAATTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTCATTACCTGTGTTTGATTT</pcr_primer_p1>
		<pcr_primer_p2>TGTAAAAGTGGGTATTCAGTTACA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GTCTCATTACCTGTGTTTGATTTGAAGTGGAGGGAGGAGAATGTCTAGGAAAAGCTGCCTCAAGGTTGGAAACGGGGAACAATAGTACAGAAGAAGGGATTATGATAATGGGGTAAACGATTACAGAAGTGATAATCTCCGAAAACCCGGGGAGAGGGTATATCGTGCGGAAAATGATTTACTTCTTTTTTAGGAGCGAAAGTGGAGGTTCGCATTTCACTTGTAACTGAATACCCACTTTTACA</canonical_amplicon>
		<polymorphic_amplicon>GTCTCATTACCTGTGTTTGATTTGAAGTGGAGGGAGGAGAATGTCTAGGAAAAGCTGCCTCAAGGTTGGAAACGGGGAACAATAGTACAGAAGAAGGGATTATGATAATGGGGTAAACGATTWCAGAAGTGATAATCTCCGAAAACCCGGGGAGAGGGTATATCGTGCGGAAAATGATTTACTTCTTTTTTAGGAGCGAAAGTGGAGGTTCGCATTTCACTTGTAACTGAATACCCACTTTTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4493</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>631898</contig_pos>
        <strand>+</strand>
        <context>TCCGAAAAAA[C/T]TCGAGAAACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAAATATATTTTAAAGAATCGAATACTTCACTTTTCGTTCCGAAAAAA</left_flank>
        <right_flank>TCGAGAAACAGGAAAATTTCGAGCAAGAAAAACGATAAAATCATAATATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAAGCATCCCGAGCACTTGACGTCCATGAAGTAGGAGTTTGGGTGTTGAACAAGACGCTTGAGCTTGTGGCGTCTGATCTCCCTTTGTGGCTCTGGGTGAAGCAGGTCAACGGCCAAAGGCATTTTTATTCCACTTGTTGAGCGGTGCTGGCTGAAAATTCAGTTGAGCAATGACATTTTCATCAGGCTTTTTATAGAGAACAAGAGAAACGAGGAAAAAAATTGCGAAAATGTCAAAATATTGAGAAAGATTTCGAAATTTGTTTTTATGTGCATTCTGACTTGAAGTAATTTTCGAAAAGGCTGTTGGTGGGAAGATTGAATAAGTACAGAGCGTTTCACAATTTCGAAAAACTTTCGAAAGGTAAAGCGAACAGTAAAAGATGAAATTAATCGATAAGTGTGTAGATAAGTCATGAGGCGGAAGTTAGAAGTCTAGAGAACAGTTGAAAATATATTTTAAAGAATCGAATACTTCACTTTTCGTTCCGAAAAAACTCGAGAAACAGGAAAATTTCGAGCAAGAAAAACGATAAAATCATAATATCAGCTTTTGCTCGAAAGTCGATGACTTTTCCTACAATTTGACATTTAACGTAGAAAAAGGTGAACCTGATCATATAAACAGTTTTTCTTTCTGAAAATTTTCGAAAAACGACGAAAAAAATCGCCAAAAACCCCCAAAAAATAGGAAAAAAAGAGAAATTTTTAGGCCAATCGTTTTCAACGCAACGCAAATATGCGGCGCGCCTCAAATGGGCGGGGCAAGCAACCGTGCGGCAGGGTTTCGCGGAGCATCGTAGTGCGCGTTGTTTATCGTAAATCGGCGCGAAGAGTATTTTTTGAACAAAAACAGTTTAAAAAGTGGGTTAAAAGATAAAAAATCGTTTGAAAATTGAAAAGAAAAAATATGATTTTATCGAATTTTGTAAATTTCAGTAATGGGTGAACCAACAGAATCAGGCACGAGTAAAGAGAAACCAATCGAAATCGATGAA</canonical>
            <polymorphic>TTGAAGCATCCCGAGCACTTGACGTCCATGAAGTAGGAGTTTGGGTGTTGAACAAGACGCTTGAGCTTGTGGCGTCTGATCTCCCTTTGTGGCTCTGGGTGAAGCAGGTCAACGGCCAAAGGCATTTTTATTCCACTTGTTGAGCGGTGCTGGCTGAAAATTCAGTTGAGCAATGACATTTTCATCAGGCTTTTTATAGAGAACAAGAGAAACGAGGAAAAAAATTGCGAAAATGTCAAAATATTGAGAAAGATTTCGAAATTTGTTTTTATGTGCATTCTGACTTGAAGTAATTTTCGAAAAGGCTGTTGGTGGGAAGATTGAATAAGTACAGAGCGTTTCACAATTTCGAAAAACTTTCGAAAGGTAAAGCGAACAGTAAAAGATGAAATTAATCGATAAGTGTGTAGATAAGTCATGAGGCGGAAGTTAGAAGTCTAGAGAACAGTTGAAAATATATTTTAAAGAATCGAATACTTCACTTTTCGTTCCGAAAAAAYTCGAGAAACAGGAAAATTTCGAGCAAGAAAAACGATAAAATCATAATATCAGCTTTTGCTCGAAAGTCGATGACTTTTCCTACAATTTGACATTTAACGTAGAAAAAGGTGAACCTGATCATATAAACAGTTTTTCTTTCTGAAAATTTTCGAAAAACGACGAAAAAAATCGCCAAAAACCCCCAAAAAATAGGAAAAAAAGAGAAATTTTTAGGCCAATCGTTTTCAACGCAACGCAAATATGCGGCGCGCCTCAAATGGGCGGGGCAAGCAACCGTGCGGCAGGGTTTCGCGGAGCATCGTAGTGCGCGTTGTTTATCGTAAATCGGCGCGAAGAGTATTTTTTGAACAAAAACAGTTTAAAAAGTGGGTTAAAAGATAAAAAATCGTTTGAAAATTGAAAAGAAAAAATATGATTTTATCGAATTTTGTAAATTTCAGTAATGGGTGAACCAACAGAATCAGGCACGAGTAAAGAGAAACCAATCGAAATCGATGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 490 10</canonical_bands>
                <polymorphic_bands>990 10</polymorphic_bands>
            </assay>
            <assay>
                <site>CTCGAG</site>
                <isoschizomers>
                    <enzyme>BssHI</enzyme>
                    <enzyme>PaeR7I</enzyme>
                    <enzyme>SciI</enzyme>
                    <enzyme>Sfr274I</enzyme>
                    <enzyme>SlaI</enzyme>
                    <enzyme>TliI</enzyme>
                    <enzyme>XhoI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>500 440 60</canonical_bands>
                <polymorphic_bands>940 60</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGTAAAGCGAACAGTAAAAGAT</pcr_primer_p1>
		<pcr_primer_p2>TTCACCTTTTTCTACGTTAAATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGGTAAAGCGAACAGTAAAAGATGAAATTAATCGATAAGTGTGTAGATAAGTCATGAGGCGGAAGTTAGAAGTCTAGAGAACAGTTGAAAATATATTTTAAAGAATCGAATACTTCACTTTTCGTTCCGAAAAAACTCGAGAAACAGGAAAATTTCGAGCAAGAAAAACGATAAAATCATAATATCAGCTTTTGCTCGAAAGTCGATGACTTTTCCTACAATTTGACATTTAACGTAGAAAAAGGTGAA</canonical_amplicon>
		<polymorphic_amplicon>AGGTAAAGCGAACAGTAAAAGATGAAATTAATCGATAAGTGTGTAGATAAGTCATGAGGCGGAAGTTAGAAGTCTAGAGAACAGTTGAAAATATATTTTAAAGAATCGAATACTTCACTTTTCGTTCCGAAAAAAYTCGAGAAACAGGAAAATTTCGAGCAAGAAAAACGATAAAATCATAATATCAGCTTTTGCTCGAAAGTCGATGACTTTTCCTACAATTTGACATTTAACGTAGAAAAAGGTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4494</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>655115</contig_pos>
        <strand>+</strand>
        <context>AGAAAAACGA[A/G]GATGGTGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGAGTGGAGTTTCGAGGAGAAAGAGCGAAAAGTTGTGGAGAAAAACGA</left_flank>
        <right_flank>GATGGTGAAGACGTTGGGAAGGGCTTAAAATTGATTTTTTTTTGAATTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGAATTGTATTTTTGGATTTCTAAACGGATTTTTGTATATGTTCAGACAATTGTGTTTCCATACAGAAAATGCATAATTTCTGACTTCTTTCTGTGAAAAATCAAGAAAAATCGACATGTTTTTAGGCTACTGTAGTTTTTATTCGGAACCTTACAATTCAAAAATTCCACGTAGAATTGACTGATTTCAGACTACATATTCGGTCTACTACAAGGCACTGGAGAAGTCATCAAACCAACGACTACAACGACTACAACAACAACGCCATCCACCACCACCACCACCACGTCTTCTGCCACATCCACGTCATCAGCTTCCACTCCAGCTGGAACTCCAGCAGAATTTCTACCATTTCGCTCAAACGATCTCGCTGTAATTCGTGACGCTCCTAAAACAGCAGATTTCCCCAGTTTTTTGACCCAGATCCGAAGAAAGCCCATCCGAAAAATGAGTGGAGTTTCGAGGAGAAAGAGCGAAAAGTTGTGGAGAAAAACGAGGATGGTGAAGACGTTGGGAAGGGCTTAAAATTGATTTTTTTTTGAATTTTTCGTGTTTCAATGAAGATTTAGAAAGAGAAATATAATTTACAGATGATTTTTTGAAAAAAAGTTTTAGATTTTAGATTCCAATAAAAAATAAAATTGAAAGGGGGAAGAATAAATAGGTGAAAACTGGAAAATGGAAAAAAAAGAGAAAAAAATTTAGAATTTGAAATCCTTGTGCTTCTTTCCACTGGATGATGAGGACGACGACGACGATTGCTTGTTCTTCTTGTCGTCTTGCACCTTTCGCTTTCTCTGGAAAATTGAGAATGAGAATCTATTAGTATTATTCTGGTCTCGCCATGACAACTACCGTAACCCAAAATAATTTTTTCAGGATTTTTTTTTCGTTTTTTACTAATTTTCGTCCCGTTTTCTGTTACTTCTCTCCGAAATATCGAGAAAATAATACGAGCATCGAGAAAAAAATCGGGAAAAAAAGTATTTTTAGGTTA</canonical>
            <polymorphic>CGAGAATTGTATTTTTGGATTTCTAAACGGATTTTTGTATATGTTCAGACAATTGTGTTTCCATACAGAAAATGCATAATTTCTGACTTCTTTCTGTGAAAAATCAAGAAAAATCGACATGTTTTTAGGCTACTGTAGTTTTTATTCGGAACCTTACAATTCAAAAATTCCACGTAGAATTGACTGATTTCAGACTACATATTCGGTCTACTACAAGGCACTGGAGAAGTCATCAAACCAACGACTACAACGACTACAACAACAACGCCATCCACCACCACCACCACCACGTCTTCTGCCACATCCACGTCATCAGCTTCCACTCCAGCTGGAACTCCAGCAGAATTTCTACCATTTCGCTCAAACGATCTCGCTGTAATTCGTGACGCTCCTAAAACAGCAGATTTCCCCAGTTTTTTGACCCAGATCCGAAGAAAGCCCATCCGAAAAATGAGTGGAGTTTCGAGGAGAAAGAGCGAAAAGTTGTGGAGAAAAACGARGATGGTGAAGACGTTGGGAAGGGCTTAAAATTGATTTTTTTTTGAATTTTTCGTGTTTCAATGAAGATTTAGAAAGAGAAATATAATTTACAGATGATTTTTTGAAAAAAAGTTTTAGATTTTAGATTCCAATAAAAAATAAAATTGAAAGGGGGAAGAATAAATAGGTGAAAACTGGAAAATGGAAAAAAAAGAGAAAAAAATTTAGAATTTGAAATCCTTGTGCTTCTTTCCACTGGATGATGAGGACGACGACGACGATTGCTTGTTCTTCTTGTCGTCTTGCACCTTTCGCTTTCTCTGGAAAATTGAGAATGAGAATCTATTAGTATTATTCTGGTCTCGCCATGACAACTACCGTAACCCAAAATAATTTTTTCAGGATTTTTTTTTCGTTTTTTACTAATTTTCGTCCCGTTTTCTGTTACTTCTCTCCGAAATATCGAGAAAATAATACGAGCATCGAGAAAAAAATCGGGAAAAAAAGTATTTTTAGGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCAGCAGAATTTCTACCAT</pcr_primer_p1>
		<pcr_primer_p2>TCTTTCTAAATCTTCATTGAAACA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTCCAGCAGAATTTCTACCATTTCGCTCAAACGATCTCGCTGTAATTCGTGACGCTCCTAAAACAGCAGATTTCCCCAGTTTTTTGACCCAGATCCGAAGAAAGCCCATCCGAAAAATGAGTGGAGTTTCGAGGAGAAAGAGCGAAAAGTTGTGGAGAAAAACGAGGATGGTGAAGACGTTGGGAAGGGCTTAAAATTGATTTTTTTTTGAATTTTTCGTGTTTCAATGAAGATTTAGAAAGA</canonical_amplicon>
		<polymorphic_amplicon>CTCCAGCAGAATTTCTACCATTTCGCTCAAACGATCTCGCTGTAATTCGTGACGCTCCTAAAACAGCAGATTTCCCCAGTTTTTTGACCCAGATCCGAAGAAAGCCCATCCGAAAAATGAGTGGAGTTTCGAGGAGAAAGAGCGAAAAGTTGTGGAGAAAAACGARGATGGTGAAGACGTTGGGAAGGGCTTAAAATTGATTTTTTTTTGAATTTTTCGTGTTTCAATGAAGATTTAGAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4495</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>655085</contig_pos>
        <strand>+</strand>
        <context>GTTTCGAGGA[A/G]AAAGAGCGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACCCAGATCCGAAGAAAGCCCATCCGAAAAATGAGTGGAGTTTCGAGGA</left_flank>
        <right_flank>AAAGAGCGAAAAGTTGTGGAGAAAAACGAGGATGGTGAAGACGTTGGGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACCTGTAGATTGCGGGAACTACAGTAACCCGAGAATTGTATTTTTGGATTTCTAAACGGATTTTTGTATATGTTCAGACAATTGTGTTTCCATACAGAAAATGCATAATTTCTGACTTCTTTCTGTGAAAAATCAAGAAAAATCGACATGTTTTTAGGCTACTGTAGTTTTTATTCGGAACCTTACAATTCAAAAATTCCACGTAGAATTGACTGATTTCAGACTACATATTCGGTCTACTACAAGGCACTGGAGAAGTCATCAAACCAACGACTACAACGACTACAACAACAACGCCATCCACCACCACCACCACCACGTCTTCTGCCACATCCACGTCATCAGCTTCCACTCCAGCTGGAACTCCAGCAGAATTTCTACCATTTCGCTCAAACGATCTCGCTGTAATTCGTGACGCTCCTAAAACAGCAGATTTCCCCAGTTTTTTGACCCAGATCCGAAGAAAGCCCATCCGAAAAATGAGTGGAGTTTCGAGGAGAAAGAGCGAAAAGTTGTGGAGAAAAACGAGGATGGTGAAGACGTTGGGAAGGGCTTAAAATTGATTTTTTTTTGAATTTTTCGTGTTTCAATGAAGATTTAGAAAGAGAAATATAATTTACAGATGATTTTTTGAAAAAAAGTTTTAGATTTTAGATTCCAATAAAAAATAAAATTGAAAGGGGGAAGAATAAATAGGTGAAAACTGGAAAATGGAAAAAAAAGAGAAAAAAATTTAGAATTTGAAATCCTTGTGCTTCTTTCCACTGGATGATGAGGACGACGACGACGATTGCTTGTTCTTCTTGTCGTCTTGCACCTTTCGCTTTCTCTGGAAAATTGAGAATGAGAATCTATTAGTATTATTCTGGTCTCGCCATGACAACTACCGTAACCCAAAATAATTTTTTCAGGATTTTTTTTTCGTTTTTTACTAATTTTCGTCCCGTTTTCTGTTACTTCTCTCCGAAATATCGAGAAAATAATACGAGCATCGAGAAA</canonical>
            <polymorphic>GACCTGTAGATTGCGGGAACTACAGTAACCCGAGAATTGTATTTTTGGATTTCTAAACGGATTTTTGTATATGTTCAGACAATTGTGTTTCCATACAGAAAATGCATAATTTCTGACTTCTTTCTGTGAAAAATCAAGAAAAATCGACATGTTTTTAGGCTACTGTAGTTTTTATTCGGAACCTTACAATTCAAAAATTCCACGTAGAATTGACTGATTTCAGACTACATATTCGGTCTACTACAAGGCACTGGAGAAGTCATCAAACCAACGACTACAACGACTACAACAACAACGCCATCCACCACCACCACCACCACGTCTTCTGCCACATCCACGTCATCAGCTTCCACTCCAGCTGGAACTCCAGCAGAATTTCTACCATTTCGCTCAAACGATCTCGCTGTAATTCGTGACGCTCCTAAAACAGCAGATTTCCCCAGTTTTTTGACCCAGATCCGAAGAAAGCCCATCCGAAAAATGAGTGGAGTTTCGAGGARAAAGAGCGAAAAGTTGTGGAGAAAAACGAGGATGGTGAAGACGTTGGGAAGGGCTTAAAATTGATTTTTTTTTGAATTTTTCGTGTTTCAATGAAGATTTAGAAAGAGAAATATAATTTACAGATGATTTTTTGAAAAAAAGTTTTAGATTTTAGATTCCAATAAAAAATAAAATTGAAAGGGGGAAGAATAAATAGGTGAAAACTGGAAAATGGAAAAAAAAGAGAAAAAAATTTAGAATTTGAAATCCTTGTGCTTCTTTCCACTGGATGATGAGGACGACGACGACGATTGCTTGTTCTTCTTGTCGTCTTGCACCTTTCGCTTTCTCTGGAAAATTGAGAATGAGAATCTATTAGTATTATTCTGGTCTCGCCATGACAACTACCGTAACCCAAAATAATTTTTTCAGGATTTTTTTTTCGTTTTTTACTAATTTTCGTCCCGTTTTCTGTTACTTCTCTCCGAAATATCGAGAAAATAATACGAGCATCGAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCAGCAGAATTTCTACCAT</pcr_primer_p1>
		<pcr_primer_p2>TCTTTCTAAATCTTCATTGAAACA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTCCAGCAGAATTTCTACCATTTCGCTCAAACGATCTCGCTGTAATTCGTGACGCTCCTAAAACAGCAGATTTCCCCAGTTTTTTGACCCAGATCCGAAGAAAGCCCATCCGAAAAATGAGTGGAGTTTCGAGGAGAAAGAGCGAAAAGTTGTGGAGAAAAACGAGGATGGTGAAGACGTTGGGAAGGGCTTAAAATTGATTTTTTTTTGAATTTTTCGTGTTTCAATGAAGATTTAGAAAGA</canonical_amplicon>
		<polymorphic_amplicon>CTCCAGCAGAATTTCTACCATTTCGCTCAAACGATCTCGCTGTAATTCGTGACGCTCCTAAAACAGCAGATTTCCCCAGTTTTTTGACCCAGATCCGAAGAAAGCCCATCCGAAAAATGAGTGGAGTTTCGAGGARAAAGAGCGAAAAGTTGTGGAGAAAAACGAGGATGGTGAAGACGTTGGGAAGGGCTTAAAATTGATTTTTTTTTGAATTTTTCGTGTTTCAATGAAGATTTAGAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4496</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>654801</contig_pos>
        <strand>+</strand>
        <context>AGAATTGACT[G/T]ATTTCAGACT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAGTTTTTATTCGGAACCTTACAATTCAAAAATTCCACGTAGAATTGACT</left_flank>
        <right_flank>ATTTCAGACTACATATTCGGTCTACTACAAGGCACTGGAGAAGTCATCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAATCACTGAAAATTATTTTTAAAAATCGAGCAACATCCGAAAAAAATAATTTTCAAAAAAATAAGGTTACAGTAGTTTTCGTTTCGAGACCTGGAGACCAAAGATTGGATTGTTAAATCTACAGTAACCCAAAAAATTTTGCAGTTTTTGAGTTTTTTTTTGTTCCCAATGAAAATGCCATCTTCTGGCTAGTTCGGCGGGAGAAATCTCCGGAAAATGGACGAAATTTTAAAAATCCGAAAATCAAAATTATTTTCAAGTTACGGTAGTTTTCGTTTTGGGACCTGTAGATTGCGGGAACTACAGTAACCCGAGAATTGTATTTTTGGATTTCTAAACGGATTTTTGTATATGTTCAGACAATTGTGTTTCCATACAGAAAATGCATAATTTCTGACTTCTTTCTGTGAAAAATCAAGAAAAATCGACATGTTTTTAGGCTACTGTAGTTTTTATTCGGAACCTTACAATTCAAAAATTCCACGTAGAATTGACTGATTTCAGACTACATATTCGGTCTACTACAAGGCACTGGAGAAGTCATCAAACCAACGACTACAACGACTACAACAACAACGCCATCCACCACCACCACCACCACGTCTTCTGCCACATCCACGTCATCAGCTTCCACTCCAGCTGGAACTCCAGCAGAATTTCTACCATTTCGCTCAAACGATCTCGCTGTAATTCGTGACGCTCCTAAAACAGCAGATTTCCCCAGTTTTTTGACCCAGATCCGAAGAAAGCCCATCCGAAAAATGAGTGGAGTTTCGAGGAGAAAGAGCGAAAAGTTGTGGAGAAAAACGAGGATGGTGAAGACGTTGGGAAGGGCTTAAAATTGATTTTTTTTTGAATTTTTCGTGTTTCAATGAAGATTTAGAAAGAGAAATATAATTTACAGATGATTTTTTGAAAAAAAGTTTTAGATTTTAGATTCCAATAAAAAATAAAATTGAAAGGGGGAAGAATAAATAGGTGAAAACTGGAAAATGGA</canonical>
            <polymorphic>AGAAATCACTGAAAATTATTTTTAAAAATCGAGCAACATCCGAAAAAAATAATTTTCAAAAAAATAAGGTTACAGTAGTTTTCGTTTCGAGACCTGGAGACCAAAGATTGGATTGTTAAATCTACAGTAACCCAAAAAATTTTGCAGTTTTTGAGTTTTTTTTTGTTCCCAATGAAAATGCCATCTTCTGGCTAGTTCGGCGGGAGAAATCTCCGGAAAATGGACGAAATTTTAAAAATCCGAAAATCAAAATTATTTTCAAGTTACGGTAGTTTTCGTTTTGGGACCTGTAGATTGCGGGAACTACAGTAACCCGAGAATTGTATTTTTGGATTTCTAAACGGATTTTTGTATATGTTCAGACAATTGTGTTTCCATACAGAAAATGCATAATTTCTGACTTCTTTCTGTGAAAAATCAAGAAAAATCGACATGTTTTTAGGCTACTGTAGTTTTTATTCGGAACCTTACAATTCAAAAATTCCACGTAGAATTGACTKATTTCAGACTACATATTCGGTCTACTACAAGGCACTGGAGAAGTCATCAAACCAACGACTACAACGACTACAACAACAACGCCATCCACCACCACCACCACCACGTCTTCTGCCACATCCACGTCATCAGCTTCCACTCCAGCTGGAACTCCAGCAGAATTTCTACCATTTCGCTCAAACGATCTCGCTGTAATTCGTGACGCTCCTAAAACAGCAGATTTCCCCAGTTTTTTGACCCAGATCCGAAGAAAGCCCATCCGAAAAATGAGTGGAGTTTCGAGGAGAAAGAGCGAAAAGTTGTGGAGAAAAACGAGGATGGTGAAGACGTTGGGAAGGGCTTAAAATTGATTTTTTTTTGAATTTTTCGTGTTTCAATGAAGATTTAGAAAGAGAAATATAATTTACAGATGATTTTTTGAAAAAAAGTTTTAGATTTTAGATTCCAATAAAAAATAAAATTGAAAGGGGGAAGAATAAATAGGTGAAAACTGGAAAATGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACGGATTTTTGTATATGTTCAG</pcr_primer_p1>
		<pcr_primer_p2>TTGTTGTTGTAGTCGTTGTAGTC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AACGGATTTTTGTATATGTTCAGACAATTGTGTTTCCATACAGAAAATGCATAATTTCTGACTTCTTTCTGTGAAAAATCAAGAAAAATCGACATGTTTTTAGGCTACTGTAGTTTTTATTCGGAACCTTACAATTCAAAAATTCCACGTAGAATTGACTGATTTCAGACTACATATTCGGTCTACTACAAGGCACTGGAGAAGTCATCAAACCAACGACTACAACGACTACAACAACAA</canonical_amplicon>
		<polymorphic_amplicon>AACGGATTTTTGTATATGTTCAGACAATTGTGTTTCCATACAGAAAATGCATAATTTCTGACTTCTTTCTGTGAAAAATCAAGAAAAATCGACATGTTTTTAGGCTACTGTAGTTTTTATTCGGAACCTTACAATTCAAAAATTCCACGTAGAATTGACTKATTTCAGACTACATATTCGGTCTACTACAAGGCACTGGAGAAGTCATCAAACCAACGACTACAACGACTACAACAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4497</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>660711</contig_pos>
        <strand>+</strand>
        <context>CTGGAGACAC[A/G]CGAGCCTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAAAATATGCCATTTGTAGAGCCATCTGAATATAGGCATCTGGAGACAC</left_flank>
        <right_flank>CGAGCCTTCTTCATGAAATCCTTTCCGTATTCTGTGAACACCACGTTCGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGCAGGCCAGAATAGTGAGGGCTCTTTATTCAGCGCTTTTGCATACTCGACCATCTGATGTTGTGGGGTTTGGCTAGTGGACAGTGACCAGTTTCGCTTGAAGACGTTGTCAAGGAATGGAACTTTGATTTCCAAGTAGCGCGCGACGACGTAAAGAGCGAAGAGGTGACGGTCGACTCCTCTGAAAAATTCAAAATTTGCGAATTTGAAAAAGACTCTGTTTTAAAAACTCACTTTCCAGCCATAGCAGTTCTATAATAATCCTGATGATGATCACATGCTTCCTTCAACTTCTCCAATTTCTTCTTCGAGTCTACATCCTTTTTCAACATTGTCCTCACAAAGTCACAAGACCAAATCGAACATGATCTTACTGTTTCAGTCCTTCCCTCCTTGAATAACCGCATGACAGCTGGCTCATAAGTCTGTTCGAATTTCCCTTGATCCTTAAAATATGCCATTTGTAGAGCCATCTGAATATAGGCATCTGGAGACACACGAGCCTTCTTCATGAAATCCTTTCCGTATTCTGTGAACACCACGTTCGCATTGCTAAAGTCTTCTGCCACGTGTTTCGATGTCTTGTAGGCCTCGTCGATGGCGTCCAATGTCTCCTGATCCATATCCCAGCAAAGTCTTTCGGGATGTGGCACGTGTTCAATGGATCCAACACAGTGTCCATCTGGTCCATAGGGGTGTTCAAATTCTTCGTGGTACTTGATGTATTCACGGACTTGGACATAGATCATTGCATCGCATGGTGAGTGCTCGGCGTTCGAAGAGAACTGAAAAACAAGGAAATCATTTTTTGGGATGATTTAGGAATAGTTAGGTAGTTAGAATTGGCATATTTTCTTATAGATACCCAAGAGATGTGCCGCGTAAAAGTGAGCTAAACTCTTATCCTATTTGCTCTTAAACGCGTACTTTAAACTCAATTATCTTAGTACCTGTAAGAGATATCAAAAATTTTTCTTCTGATAAATTGTTTGTCATAG</canonical>
            <polymorphic>CCAGCAGGCCAGAATAGTGAGGGCTCTTTATTCAGCGCTTTTGCATACTCGACCATCTGATGTTGTGGGGTTTGGCTAGTGGACAGTGACCAGTTTCGCTTGAAGACGTTGTCAAGGAATGGAACTTTGATTTCCAAGTAGCGCGCGACGACGTAAAGAGCGAAGAGGTGACGGTCGACTCCTCTGAAAAATTCAAAATTTGCGAATTTGAAAAAGACTCTGTTTTAAAAACTCACTTTCCAGCCATAGCAGTTCTATAATAATCCTGATGATGATCACATGCTTCCTTCAACTTCTCCAATTTCTTCTTCGAGTCTACATCCTTTTTCAACATTGTCCTCACAAAGTCACAAGACCAAATCGAACATGATCTTACTGTTTCAGTCCTTCCCTCCTTGAATAACCGCATGACAGCTGGCTCATAAGTCTGTTCGAATTTCCCTTGATCCTTAAAATATGCCATTTGTAGAGCCATCTGAATATAGGCATCTGGAGACACRCGAGCCTTCTTCATGAAATCCTTTCCGTATTCTGTGAACACCACGTTCGCATTGCTAAAGTCTTCTGCCACGTGTTTCGATGTCTTGTAGGCCTCGTCGATGGCGTCCAATGTCTCCTGATCCATATCCCAGCAAAGTCTTTCGGGATGTGGCACGTGTTCAATGGATCCAACACAGTGTCCATCTGGTCCATAGGGGTGTTCAAATTCTTCGTGGTACTTGATGTATTCACGGACTTGGACATAGATCATTGCATCGCATGGTGAGTGCTCGGCGTTCGAAGAGAACTGAAAAACAAGGAAATCATTTTTTGGGATGATTTAGGAATAGTTAGGTAGTTAGAATTGGCATATTTTCTTATAGATACCCAAGAGATGTGCCGCGTAAAAGTGAGCTAAACTCTTATCCTATTTGCTCTTAAACGCGTACTTTAAACTCAATTATCTTAGTACCTGTAAGAGATATCAAAAATTTTTCTTCTGATAAATTGTTTGTCATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>148 110 108 82 77 65 64 48 43 36 34 27 21 19 16 16 15 14 13 8 7 5 4 4 4 4 3 3 2</canonical_bands>
                <polymorphic_bands>148 110 108 82 77 65 64 48 43 38 34 27 21 19 16 16 15 14 13 8 7 5 4 4 4 4 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCTTTTTCAACATTGTCCT</pcr_primer_p1>
		<pcr_primer_p2>GGCAGAAGACTTTAGCAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCCTTTTTCAACATTGTCCTCACAAAGTCACAAGACCAAATCGAACATGATCTTACTGTTTCAGTCCTTCCCTCCTTGAATAACCGCATGACAGCTGGCTCATAAGTCTGTTCGAATTTCCCTTGATCCTTAAAATATGCCATTTGTAGAGCCATCTGAATATAGGCATCTGGAGACACACGAGCCTTCTTCATGAAATCCTTTCCGTATTCTGTGAACACCACGTTCGCATTGCTAAAGTCTTCTGCC</canonical_amplicon>
		<polymorphic_amplicon>ATCCTTTTTCAACATTGTCCTCACAAAGTCACAAGACCAAATCGAACATGATCTTACTGTTTCAGTCCTTCCCTCCTTGAATAACCGCATGACAGCTGGCTCATAAGTCTGTTCGAATTTCCCTTGATCCTTAAAATATGCCATTTGTAGAGCCATCTGAATATAGGCATCTGGAGACACRCGAGCCTTCTTCATGAAATCCTTTCCGTATTCTGTGAACACCACGTTCGCATTGCTAAAGTCTTCTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4498</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>662717</contig_pos>
        <strand>+</strand>
        <context>AAAACCTATA[C/T]ACGATATCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGTTAATTTATATTGAGAATGTGTAATTTCCAAGCTTAAAACCTATA</left_flank>
        <right_flank>ACGATATCTTTAAGATCTTAAAATTCAACCAATGCATTATCTATCTGTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACATTGTTTTTCTGGCCCATATAAACTTACATAATTCTTCGAGACTGCCCATTTCATCCAAAGCTTATTCTGAAGTCCTGAAGCTACAGTACTCTTGAATTCTTCCGCTTGTTCAGCCATCTCCTCGTACTCCTTCTCCGACAGAATCGGTTTCATAGTCACCAAATATTTGGCAACTGTATCCTCAACTTTTGGTGGCAGCAGCCATGGAAGGATCCCTTGATAGGCGAAGAACGTGGCTCTCTTCGAAATGAATCCGAGGGTGACCATGAAAATTTTTGTAGCCAAGCTTGGCTCCTTGCCAATTTCCTCGAATAACCAGCCGTTGTAGTAGAGCATCAGAGTCAATGAGCAACGAATTACTGTAGTTATGGCAAGTGCAGTGATGGTGCCGAGGAGAAGAGAAAGGAAGGTTTGGGCGAGGAGCGATTTTCTGGAAATTGAAAATTTTTGTTAATTTATATTGAGAATGTGTAATTTCCAAGCTTAAAACCTATACACGATATCTTTAAGATCTTAAAATTCAACCAATGCATTATCTATCTGTGTGTCTGTATGTCCACTTACCCAATTACTGCAAATGCGAAATTCTCAATCATCTTTGGTGTCAGATTCATGAAGTTCAATTCCAAAGCATCCAGTACCGTCCACAGTGTCAAGAAGAACAAAATCTCTTTAGTGAGCACTGGGAAAAGTGCGTATTCCAATTGTTTAGCATAGTATCTCGCATTCTGACGGATTAGTCTGTCCAGTGGCACTGGACGTGTAGTTTTTGCCATCTGAAAAATCTCAATTTTGGCAACTTTTTTTGCTTCCACTGATTAGATTAAAAAGATCAGTTTCACTTTCATGGCACGCATGGCAAAAATGATAAAGATGATAAGACCGGACACACAATTTTTATCAGTTGCACTTGAATATAGTTTAGTGGACCTCTTATTTTGGGTTGTACGGTATTCACTACCGACAAACAAAAATGAACTAAACAAGCATTAAATA</canonical>
            <polymorphic>AACATTGTTTTTCTGGCCCATATAAACTTACATAATTCTTCGAGACTGCCCATTTCATCCAAAGCTTATTCTGAAGTCCTGAAGCTACAGTACTCTTGAATTCTTCCGCTTGTTCAGCCATCTCCTCGTACTCCTTCTCCGACAGAATCGGTTTCATAGTCACCAAATATTTGGCAACTGTATCCTCAACTTTTGGTGGCAGCAGCCATGGAAGGATCCCTTGATAGGCGAAGAACGTGGCTCTCTTCGAAATGAATCCGAGGGTGACCATGAAAATTTTTGTAGCCAAGCTTGGCTCCTTGCCAATTTCCTCGAATAACCAGCCGTTGTAGTAGAGCATCAGAGTCAATGAGCAACGAATTACTGTAGTTATGGCAAGTGCAGTGATGGTGCCGAGGAGAAGAGAAAGGAAGGTTTGGGCGAGGAGCGATTTTCTGGAAATTGAAAATTTTTGTTAATTTATATTGAGAATGTGTAATTTCCAAGCTTAAAACCTATAYACGATATCTTTAAGATCTTAAAATTCAACCAATGCATTATCTATCTGTGTGTCTGTATGTCCACTTACCCAATTACTGCAAATGCGAAATTCTCAATCATCTTTGGTGTCAGATTCATGAAGTTCAATTCCAAAGCATCCAGTACCGTCCACAGTGTCAAGAAGAACAAAATCTCTTTAGTGAGCACTGGGAAAAGTGCGTATTCCAATTGTTTAGCATAGTATCTCGCATTCTGACGGATTAGTCTGTCCAGTGGCACTGGACGTGTAGTTTTTGCCATCTGAAAAATCTCAATTTTGGCAACTTTTTTTGCTTCCACTGATTAGATTAAAAAGATCAGTTTCACTTTCATGGCACGCATGGCAAAAATGATAAAGATGATAAGACCGGACACACAATTTTTATCAGTTGCACTTGAATATAGTTTAGTGGACCTCTTATTTTGGGTTGTACGGTATTCACTACCGACAAACAAAAATGAACTAAACAAGCATTAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>162 115 83 57 51 48 45 43 41 39 37 36 30 27 27 26 26 18 18 12 12 11 9 6 5 5 4 3 2 2</canonical_bands>
                <polymorphic_bands>162 115 83 74 57 51 45 43 41 39 37 36 30 27 27 26 18 18 12 12 11 9 6 5 5 4 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGGAAATTGAAAATTTTTGTTA</pcr_primer_p1>
		<pcr_primer_p2>TGCTCACTAAAGAGATTTTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTGGAAATTGAAAATTTTTGTTAATTTATATTGAGAATGTGTAATTTCCAAGCTTAAAACCTATACACGATATCTTTAAGATCTTAAAATTCAACCAATGCATTATCTATCTGTGTGTCTGTATGTCCACTTACCCAATTACTGCAAATGCGAAATTCTCAATCATCTTTGGTGTCAGATTCATGAAGTTCAATTCCAAAGCATCCAGTACCGTCCACAGTGTCAAGAAGAACAAAATCTCTTTAGTGAGCA</canonical_amplicon>
		<polymorphic_amplicon>CTGGAAATTGAAAATTTTTGTTAATTTATATTGAGAATGTGTAATTTCCAAGCTTAAAACCTATAYACGATATCTTTAAGATCTTAAAATTCAACCAATGCATTATCTATCTGTGTGTCTGTATGTCCACTTACCCAATTACTGCAAATGCGAAATTCTCAATCATCTTTGGTGTCAGATTCATGAAGTTCAATTCCAAAGCATCCAGTACCGTCCACAGTGTCAAGAAGAACAAAATCTCTTTAGTGAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4499</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>682087</contig_pos>
        <strand>+</strand>
        <context>TCCTCGTCTC[C/T]AGCTGCTCGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTTTTCCAGCTTTTCAATTGTTTCCTTATTAAGTTGATTCCTCGTCTC</left_flank>
        <right_flank>AGCTGCTCGGTTAAACTTTCAAGTTTCGCGGTGTTTTCAGCTTTTATCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGATGTATCTTTCATTCCTGCATTTTCTTCCGAACACTGAAAATTAGAAAATTCTTACTTTTTAATTTGAATTTCACCGCTTACTAGAATCGTAATATTCATCAAAGTTTCTTTTGTTTGTTGAATGGATTTCAAAACATTCCGAAACTCTTTCAACAGTTCTCGATTCGCATTTTGTCTTATACGAAGCACCAGTTCATCCTGGTTCTGTTTAGCAGTCTTGCATAGCTCTTGAGCCATCAGTTCTTCATGCTGTCTGAAATTCAGGAATTTTTGATGAAGAAGTTTAATTAAACCAACTTTTTCTCTTCAAAAGTCTTATTCAGCAAATCTTCTTGTTGTTTCCTGACTTCTAGTATCATTTTCTGATTATCAGATTCCAGTTTTGTTAGCTTTTCCAGGTACTCGTTAAAGTTTTCCATTTGTTGCAGTTTGATTCTCAGATTTTCTTTTTCCAGCTTTTCAATTGTTTCCTTATTAAGTTGATTCCTCGTCTCCAGCTGCTCGGTTAAACTTTCAAGTTTCGCGGTGTTTTCAGCTTTTATCAGTACCAGCTGGAAATTAAAAAAACGTTGCGATATAAATTGAAATAAATATGCACCAACCTGGTTTGTGTGATCCTGTTCTCTTTCGTTGAATTTCTGCAAATTCTCTTCTCGCAGTTGCTTTACATTCTGTTCGTGAGCCAATTTCATTGTTGCTACTTCTTCGTCGTGCCTTTTTTGACTTTCCTTTATTTGACTGACCAGTAATCTGCAAACAAGCAACCAAATTTTCCTATTTTTGTAAAAATGGCTTTGTCGGCCGGCCCACGGCCAGAACTAATTAAACTCACTCTCTTTCCTCAATATATTTTTTCTCCGATTCCTTCCTTGCTTCAATGATCGTTTCTTCTATTCGATTTAACATTTCTTGTTCATGATTGTTTTGAAGTTTATATATTTCTTCCTGATTTTCTTTCTTTTGTTTTCCAATTCTAGCGTACAGATTCGCAAGTG</canonical>
            <polymorphic>ATGGATGTATCTTTCATTCCTGCATTTTCTTCCGAACACTGAAAATTAGAAAATTCTTACTTTTTAATTTGAATTTCACCGCTTACTAGAATCGTAATATTCATCAAAGTTTCTTTTGTTTGTTGAATGGATTTCAAAACATTCCGAAACTCTTTCAACAGTTCTCGATTCGCATTTTGTCTTATACGAAGCACCAGTTCATCCTGGTTCTGTTTAGCAGTCTTGCATAGCTCTTGAGCCATCAGTTCTTCATGCTGTCTGAAATTCAGGAATTTTTGATGAAGAAGTTTAATTAAACCAACTTTTTCTCTTCAAAAGTCTTATTCAGCAAATCTTCTTGTTGTTTCCTGACTTCTAGTATCATTTTCTGATTATCAGATTCCAGTTTTGTTAGCTTTTCCAGGTACTCGTTAAAGTTTTCCATTTGTTGCAGTTTGATTCTCAGATTTTCTTTTTCCAGCTTTTCAATTGTTTCCTTATTAAGTTGATTCCTCGTCTCYAGCTGCTCGGTTAAACTTTCAAGTTTCGCGGTGTTTTCAGCTTTTATCAGTACCAGCTGGAAATTAAAAAAACGTTGCGATATAAATTGAAATAAATATGCACCAACCTGGTTTGTGTGATCCTGTTCTCTTTCGTTGAATTTCTGCAAATTCTCTTCTCGCAGTTGCTTTACATTCTGTTCGTGAGCCAATTTCATTGTTGCTACTTCTTCGTCGTGCCTTTTTTGACTTTCCTTTATTTGACTGACCAGTAATCTGCAAACAAGCAACCAAATTTTCCTATTTTTGTAAAAATGGCTTTGTCGGCCGGCCCACGGCCAGAACTAATTAAACTCACTCTCTTTCCTCAATATATTTTTTCTCCGATTCCTTCCTTGCTTCAATGATCGTTTCTTCTATTCGATTTAACATTTCTTGTTCATGATTGTTTTGAAGTTTATATATTTCTTCCTGATTTTCTTTCTTTTGTTTTCCAATTCTAGCGTACAGATTCGCAAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>502 444 54</canonical_bands>
                <polymorphic_bands>556 444</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>502 444 54</canonical_bands>
                <polymorphic_bands>556 444</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAAAAGTCTTATTCAGCAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGGTACTGATAAAAGCTGAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTCAAAAGTCTTATTCAGCAAATCTTCTTGTTGTTTCCTGACTTCTAGTATCATTTTCTGATTATCAGATTCCAGTTTTGTTAGCTTTTCCAGGTACTCGTTAAAGTTTTCCATTTGTTGCAGTTTGATTCTCAGATTTTCTTTTTCCAGCTTTTCAATTGTTTCCTTATTAAGTTGATTCCTCGTCTCCAGCTGCTCGGTTAAACTTTCAAGTTTCGCGGTGTTTTCAGCTTTTATCAGTACCA</canonical_amplicon>
		<polymorphic_amplicon>TTCAAAAGTCTTATTCAGCAAATCTTCTTGTTGTTTCCTGACTTCTAGTATCATTTTCTGATTATCAGATTCCAGTTTTGTTAGCTTTTCCAGGTACTCGTTAAAGTTTTCCATTTGTTGCAGTTTGATTCTCAGATTTTCTTTTTCCAGCTTTTCAATTGTTTCCTTATTAAGTTGATTCCTCGTCTCYAGCTGCTCGGTTAAACTTTCAAGTTTCGCGGTGTTTTCAGCTTTTATCAGTACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4500</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>682303</contig_pos>
        <strand>+</strand>
        <context>CTTCTTCGTC[C/G]TGCCTTTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGCTTTACATTCTGTTCGTGAGCCAATTTCATTGTTGCTACTTCTTCGTC</left_flank>
        <right_flank>TGCCTTTTTTGACTTTCCTTTATTTGACTGACCAGTAATCTGCAAACAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAGTCTTGCATAGCTCTTGAGCCATCAGTTCTTCATGCTGTCTGAAATTCAGGAATTTTTGATGAAGAAGTTTAATTAAACCAACTTTTTCTCTTCAAAAGTCTTATTCAGCAAATCTTCTTGTTGTTTCCTGACTTCTAGTATCATTTTCTGATTATCAGATTCCAGTTTTGTTAGCTTTTCCAGGTACTCGTTAAAGTTTTCCATTTGTTGCAGTTTGATTCTCAGATTTTCTTTTTCCAGCTTTTCAATTGTTTCCTTATTAAGTTGATTCCTCGTCTCCAGCTGCTCGGTTAAACTTTCAAGTTTCGCGGTGTTTTCAGCTTTTATCAGTACCAGCTGGAAATTAAAAAAACGTTGCGATATAAATTGAAATAAATATGCACCAACCTGGTTTGTGTGATCCTGTTCTCTTTCGTTGAATTTCTGCAAATTCTCTTCTCGCAGTTGCTTTACATTCTGTTCGTGAGCCAATTTCATTGTTGCTACTTCTTCGTCGTGCCTTTTTTGACTTTCCTTTATTTGACTGACCAGTAATCTGCAAACAAGCAACCAAATTTTCCTATTTTTGTAAAAATGGCTTTGTCGGCCGGCCCACGGCCAGAACTAATTAAACTCACTCTCTTTCCTCAATATATTTTTTCTCCGATTCCTTCCTTGCTTCAATGATCGTTTCTTCTATTCGATTTAACATTTCTTGTTCATGATTGTTTTGAAGTTTATATATTTCTTCCTGATTTTCTTTCTTTTGTTTTCCAATTCTAGCGTACAGATTCGCAAGTGCTTTACCATGTGTAGCCGTTAAGTTCAGCATCTGGATATTGAAGGAAAAATTATAATAATTGGTTTTCCATAAGCACTTTTCAACTTCAATCCAATTTATCTCGGTTTCTGTAAAAATTATCAAAAAGTGATCAACTGATAAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACACATTTTGGTTTTCTTTCACAGAGACCGTGATATA</canonical>
            <polymorphic>GCAGTCTTGCATAGCTCTTGAGCCATCAGTTCTTCATGCTGTCTGAAATTCAGGAATTTTTGATGAAGAAGTTTAATTAAACCAACTTTTTCTCTTCAAAAGTCTTATTCAGCAAATCTTCTTGTTGTTTCCTGACTTCTAGTATCATTTTCTGATTATCAGATTCCAGTTTTGTTAGCTTTTCCAGGTACTCGTTAAAGTTTTCCATTTGTTGCAGTTTGATTCTCAGATTTTCTTTTTCCAGCTTTTCAATTGTTTCCTTATTAAGTTGATTCCTCGTCTCCAGCTGCTCGGTTAAACTTTCAAGTTTCGCGGTGTTTTCAGCTTTTATCAGTACCAGCTGGAAATTAAAAAAACGTTGCGATATAAATTGAAATAAATATGCACCAACCTGGTTTGTGTGATCCTGTTCTCTTTCGTTGAATTTCTGCAAATTCTCTTCTCGCAGTTGCTTTACATTCTGTTCGTGAGCCAATTTCATTGTTGCTACTTCTTCGTCSTGCCTTTTTTGACTTTCCTTTATTTGACTGACCAGTAATCTGCAAACAAGCAACCAAATTTTCCTATTTTTGTAAAAATGGCTTTGTCGGCCGGCCCACGGCCAGAACTAATTAAACTCACTCTCTTTCCTCAATATATTTTTTCTCCGATTCCTTCCTTGCTTCAATGATCGTTTCTTCTATTCGATTTAACATTTCTTGTTCATGATTGTTTTGAAGTTTATATATTTCTTCCTGATTTTCTTTCTTTTGTTTTCCAATTCTAGCGTACAGATTCGCAAGTGCTTTACCATGTGTAGCCGTTAAGTTCAGCATCTGGATATTGAAGGAAAAATTATAATAATTGGTTTTCCATAAGCACTTTTCAACTTCAATCCAATTTATCTCGGTTTCTGTAAAAATTATCAAAAAGTGATCAACTGATAAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACACATTTTGGTTTTCTTTCACAGAGACCGTGATATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>317 164 96 69 66 64 54 33 31 22 21 18 15 12 11 5 2</canonical_bands>
                <polymorphic_bands>317 164 129 69 66 64 54 31 22 21 18 15 12 11 5 2</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGTTTTCAGCTTTTATCAGTA</pcr_primer_p1>
		<pcr_primer_p2>AAAATTTGGTTGCTTGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTGTTTTCAGCTTTTATCAGTACCAGCTGGAAATTAAAAAAACGTTGCGATATAAATTGAAATAAATATGCACCAACCTGGTTTGTGTGATCCTGTTCTCTTTCGTTGAATTTCTGCAAATTCTCTTCTCGCAGTTGCTTTACATTCTGTTCGTGAGCCAATTTCATTGTTGCTACTTCTTCGTCGTGCCTTTTTTGACTTTCCTTTATTTGACTGACCAGTAATCTGCAAACAAGCAACCAAATTTT</canonical_amplicon>
		<polymorphic_amplicon>GGTGTTTTCAGCTTTTATCAGTACCAGCTGGAAATTAAAAAAACGTTGCGATATAAATTGAAATAAATATGCACCAACCTGGTTTGTGTGATCCTGTTCTCTTTCGTTGAATTTCTGCAAATTCTCTTCTCGCAGTTGCTTTACATTCTGTTCGTGAGCCAATTTCATTGTTGCTACTTCTTCGTCSTGCCTTTTTTGACTTTCCTTTATTTGACTGACCAGTAATCTGCAAACAAGCAACCAAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4501</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>682376</contig_pos>
        <strand>+</strand>
        <context>CCTATTTTTG[C/T]AAAAATGGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGACTGACCAGTAATCTGCAAACAAGCAACCAAATTTTCCTATTTTTG</left_flank>
        <right_flank>AAAAATGGCTTTGTCGGCCGGCCCACGGCCAGAACTAATTAAACTCACTC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTAAACCAACTTTTTCTCTTCAAAAGTCTTATTCAGCAAATCTTCTTGTTGTTTCCTGACTTCTAGTATCATTTTCTGATTATCAGATTCCAGTTTTGTTAGCTTTTCCAGGTACTCGTTAAAGTTTTCCATTTGTTGCAGTTTGATTCTCAGATTTTCTTTTTCCAGCTTTTCAATTGTTTCCTTATTAAGTTGATTCCTCGTCTCCAGCTGCTCGGTTAAACTTTCAAGTTTCGCGGTGTTTTCAGCTTTTATCAGTACCAGCTGGAAATTAAAAAAACGTTGCGATATAAATTGAAATAAATATGCACCAACCTGGTTTGTGTGATCCTGTTCTCTTTCGTTGAATTTCTGCAAATTCTCTTCTCGCAGTTGCTTTACATTCTGTTCGTGAGCCAATTTCATTGTTGCTACTTCTTCGTCGTGCCTTTTTTGACTTTCCTTTATTTGACTGACCAGTAATCTGCAAACAAGCAACCAAATTTTCCTATTTTTGTAAAAATGGCTTTGTCGGCCGGCCCACGGCCAGAACTAATTAAACTCACTCTCTTTCCTCAATATATTTTTTCTCCGATTCCTTCCTTGCTTCAATGATCGTTTCTTCTATTCGATTTAACATTTCTTGTTCATGATTGTTTTGAAGTTTATATATTTCTTCCTGATTTTCTTTCTTTTGTTTTCCAATTCTAGCGTACAGATTCGCAAGTGCTTTACCATGTGTAGCCGTTAAGTTCAGCATCTGGATATTGAAGGAAAAATTATAATAATTGGTTTTCCATAAGCACTTTTCAACTTCAATCCAATTTATCTCGGTTTCTGTAAAAATTATCAAAAAGTGATCAACTGATAAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACACATTTTGGTTTTCTTTCACAGAGACCGTGATATAGTTGCTCAAAGTTTACTTTCTGAGACATTCTAGTAGAGTAGTGTTTACGGTAGTATCAAAAATGTTTTGTCAG</canonical>
            <polymorphic>TAATTAAACCAACTTTTTCTCTTCAAAAGTCTTATTCAGCAAATCTTCTTGTTGTTTCCTGACTTCTAGTATCATTTTCTGATTATCAGATTCCAGTTTTGTTAGCTTTTCCAGGTACTCGTTAAAGTTTTCCATTTGTTGCAGTTTGATTCTCAGATTTTCTTTTTCCAGCTTTTCAATTGTTTCCTTATTAAGTTGATTCCTCGTCTCCAGCTGCTCGGTTAAACTTTCAAGTTTCGCGGTGTTTTCAGCTTTTATCAGTACCAGCTGGAAATTAAAAAAACGTTGCGATATAAATTGAAATAAATATGCACCAACCTGGTTTGTGTGATCCTGTTCTCTTTCGTTGAATTTCTGCAAATTCTCTTCTCGCAGTTGCTTTACATTCTGTTCGTGAGCCAATTTCATTGTTGCTACTTCTTCGTCGTGCCTTTTTTGACTTTCCTTTATTTGACTGACCAGTAATCTGCAAACAAGCAACCAAATTTTCCTATTTTTGYAAAAATGGCTTTGTCGGCCGGCCCACGGCCAGAACTAATTAAACTCACTCTCTTTCCTCAATATATTTTTTCTCCGATTCCTTCCTTGCTTCAATGATCGTTTCTTCTATTCGATTTAACATTTCTTGTTCATGATTGTTTTGAAGTTTATATATTTCTTCCTGATTTTCTTTCTTTTGTTTTCCAATTCTAGCGTACAGATTCGCAAGTGCTTTACCATGTGTAGCCGTTAAGTTCAGCATCTGGATATTGAAGGAAAAATTATAATAATTGGTTTTCCATAAGCACTTTTCAACTTCAATCCAATTTATCTCGGTTTCTGTAAAAATTATCAAAAAGTGATCAACTGATAAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACACATTTTGGTTTTCTTTCACAGAGACCGTGATATAGTTGCTCAAAGTTTACTTTCTGAGACATTCTAGTAGAGTAGTGTTTACGGTAGTATCAAAAATGTTTTGTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTATTTGACTGACCAGTAATCTG</pcr_primer_p1>
		<pcr_primer_p2>TAGAATTGGAAAACAAAAGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTATTTGACTGACCAGTAATCTGCAAACAAGCAACCAAATTTTCCTATTTTTGTAAAAATGGCTTTGTCGGCCGGCCCACGGCCAGAACTAATTAAACTCACTCTCTTTCCTCAATATATTTTTTCTCCGATTCCTTCCTTGCTTCAATGATCGTTTCTTCTATTCGATTTAACATTTCTTGTTCATGATTGTTTTGAAGTTTATATATTTCTTCCTGATTTTCTTTCTTTTGTTTTCCAATTCTA</canonical_amplicon>
		<polymorphic_amplicon>TTTATTTGACTGACCAGTAATCTGCAAACAAGCAACCAAATTTTCCTATTTTTGYAAAAATGGCTTTGTCGGCCGGCCCACGGCCAGAACTAATTAAACTCACTCTCTTTCCTCAATATATTTTTTCTCCGATTCCTTCCTTGCTTCAATGATCGTTTCTTCTATTCGATTTAACATTTCTTGTTCATGATTGTTTTGAAGTTTATATATTTCTTCCTGATTTTCTTTCTTTTGTTTTCCAATTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4502</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>682405</contig_pos>
        <strand>+</strand>
        <context>CGGCCCACGG[C/T]CAGAACTAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACCAAATTTTCCTATTTTTGTAAAAATGGCTTTGTCGGCCGGCCCACGG</left_flank>
        <right_flank>CAGAACTAATTAAACTCACTCTCTTTCCTCAATATATTTTTTCTCCGATT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTATTCAGCAAATCTTCTTGTTGTTTCCTGACTTCTAGTATCATTTTCTGATTATCAGATTCCAGTTTTGTTAGCTTTTCCAGGTACTCGTTAAAGTTTTCCATTTGTTGCAGTTTGATTCTCAGATTTTCTTTTTCCAGCTTTTCAATTGTTTCCTTATTAAGTTGATTCCTCGTCTCCAGCTGCTCGGTTAAACTTTCAAGTTTCGCGGTGTTTTCAGCTTTTATCAGTACCAGCTGGAAATTAAAAAAACGTTGCGATATAAATTGAAATAAATATGCACCAACCTGGTTTGTGTGATCCTGTTCTCTTTCGTTGAATTTCTGCAAATTCTCTTCTCGCAGTTGCTTTACATTCTGTTCGTGAGCCAATTTCATTGTTGCTACTTCTTCGTCGTGCCTTTTTTGACTTTCCTTTATTTGACTGACCAGTAATCTGCAAACAAGCAACCAAATTTTCCTATTTTTGTAAAAATGGCTTTGTCGGCCGGCCCACGGCCAGAACTAATTAAACTCACTCTCTTTCCTCAATATATTTTTTCTCCGATTCCTTCCTTGCTTCAATGATCGTTTCTTCTATTCGATTTAACATTTCTTGTTCATGATTGTTTTGAAGTTTATATATTTCTTCCTGATTTTCTTTCTTTTGTTTTCCAATTCTAGCGTACAGATTCGCAAGTGCTTTACCATGTGTAGCCGTTAAGTTCAGCATCTGGATATTGAAGGAAAAATTATAATAATTGGTTTTCCATAAGCACTTTTCAACTTCAATCCAATTTATCTCGGTTTCTGTAAAAATTATCAAAAAGTGATCAACTGATAAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACACATTTTGGTTTTCTTTCACAGAGACCGTGATATAGTTGCTCAAAGTTTACTTTCTGAGACATTCTAGTAGAGTAGTGTTTACGGTAGTATCAAAAATGTTTTGTCAGTTAACTATCTTTTGAGCCATAACTAGAAG</canonical>
            <polymorphic>TCTTATTCAGCAAATCTTCTTGTTGTTTCCTGACTTCTAGTATCATTTTCTGATTATCAGATTCCAGTTTTGTTAGCTTTTCCAGGTACTCGTTAAAGTTTTCCATTTGTTGCAGTTTGATTCTCAGATTTTCTTTTTCCAGCTTTTCAATTGTTTCCTTATTAAGTTGATTCCTCGTCTCCAGCTGCTCGGTTAAACTTTCAAGTTTCGCGGTGTTTTCAGCTTTTATCAGTACCAGCTGGAAATTAAAAAAACGTTGCGATATAAATTGAAATAAATATGCACCAACCTGGTTTGTGTGATCCTGTTCTCTTTCGTTGAATTTCTGCAAATTCTCTTCTCGCAGTTGCTTTACATTCTGTTCGTGAGCCAATTTCATTGTTGCTACTTCTTCGTCGTGCCTTTTTTGACTTTCCTTTATTTGACTGACCAGTAATCTGCAAACAAGCAACCAAATTTTCCTATTTTTGTAAAAATGGCTTTGTCGGCCGGCCCACGGYCAGAACTAATTAAACTCACTCTCTTTCCTCAATATATTTTTTCTCCGATTCCTTCCTTGCTTCAATGATCGTTTCTTCTATTCGATTTAACATTTCTTGTTCATGATTGTTTTGAAGTTTATATATTTCTTCCTGATTTTCTTTCTTTTGTTTTCCAATTCTAGCGTACAGATTCGCAAGTGCTTTACCATGTGTAGCCGTTAAGTTCAGCATCTGGATATTGAAGGAAAAATTATAATAATTGGTTTTCCATAAGCACTTTTCAACTTCAATCCAATTTATCTCGGTTTCTGTAAAAATTATCAAAAAGTGATCAACTGATAAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACACATTTTGGTTTTCTTTCACAGAGACCGTGATATAGTTGCTCAAAGTTTACTTTCTGAGACATTCTAGTAGAGTAGTGTTTACGGTAGTATCAAAAATGTTTTGTCAGTTAACTATCTTTTGAGCCATAACTAGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 488 7 4</canonical_bands>
                <polymorphic_bands>508 488 4</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 486 11</canonical_bands>
                <polymorphic_bands>514 486</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>290 198 131 110 76 66 42 38 16 13 9 7 4</canonical_bands>
                <polymorphic_bands>290 205 131 110 76 66 42 38 16 13 9 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTATTTGACTGACCAGTAATCTG</pcr_primer_p1>
		<pcr_primer_p2>TAGAATTGGAAAACAAAAGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTATTTGACTGACCAGTAATCTGCAAACAAGCAACCAAATTTTCCTATTTTTGTAAAAATGGCTTTGTCGGCCGGCCCACGGCCAGAACTAATTAAACTCACTCTCTTTCCTCAATATATTTTTTCTCCGATTCCTTCCTTGCTTCAATGATCGTTTCTTCTATTCGATTTAACATTTCTTGTTCATGATTGTTTTGAAGTTTATATATTTCTTCCTGATTTTCTTTCTTTTGTTTTCCAATTCTA</canonical_amplicon>
		<polymorphic_amplicon>TTTATTTGACTGACCAGTAATCTGCAAACAAGCAACCAAATTTTCCTATTTTTGTAAAAATGGCTTTGTCGGCCGGCCCACGGYCAGAACTAATTAAACTCACTCTCTTTCCTCAATATATTTTTTCTCCGATTCCTTCCTTGCTTCAATGATCGTTTCTTCTATTCGATTTAACATTTCTTGTTCATGATTGTTTTGAAGTTTATATATTTCTTCCTGATTTTCTTTCTTTTGTTTTCCAATTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4503</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>682525</contig_pos>
        <strand>+</strand>
        <context>TTTTGAAGTT[C/T]ATATATTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTTTCTTCTATTCGATTTAACATTTCTTGTTCATGATTGTTTTGAAGTT</left_flank>
        <right_flank>ATATATTTCTTCCTGATTTTCTTTCTTTTGTTTTCCAATTCTAGCGTACA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTCAGATTTTCTTTTTCCAGCTTTTCAATTGTTTCCTTATTAAGTTGATTCCTCGTCTCCAGCTGCTCGGTTAAACTTTCAAGTTTCGCGGTGTTTTCAGCTTTTATCAGTACCAGCTGGAAATTAAAAAAACGTTGCGATATAAATTGAAATAAATATGCACCAACCTGGTTTGTGTGATCCTGTTCTCTTTCGTTGAATTTCTGCAAATTCTCTTCTCGCAGTTGCTTTACATTCTGTTCGTGAGCCAATTTCATTGTTGCTACTTCTTCGTCGTGCCTTTTTTGACTTTCCTTTATTTGACTGACCAGTAATCTGCAAACAAGCAACCAAATTTTCCTATTTTTGTAAAAATGGCTTTGTCGGCCGGCCCACGGCCAGAACTAATTAAACTCACTCTCTTTCCTCAATATATTTTTTCTCCGATTCCTTCCTTGCTTCAATGATCGTTTCTTCTATTCGATTTAACATTTCTTGTTCATGATTGTTTTGAAGTTTATATATTTCTTCCTGATTTTCTTTCTTTTGTTTTCCAATTCTAGCGTACAGATTCGCAAGTGCTTTACCATGTGTAGCCGTTAAGTTCAGCATCTGGATATTGAAGGAAAAATTATAATAATTGGTTTTCCATAAGCACTTTTCAACTTCAATCCAATTTATCTCGGTTTCTGTAAAAATTATCAAAAAGTGATCAACTGATAAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACACATTTTGGTTTTCTTTCACAGAGACCGTGATATAGTTGCTCAAAGTTTACTTTCTGAGACATTCTAGTAGAGTAGTGTTTACGGTAGTATCAAAAATGTTTTGTCAGTTAACTATCTTTTGAGCCATAACTAGAAGATCTTTCAAATTGCAATTTTGAAAGACTTACCTGATTGTCCTTCTCGCGGACTGATTTCCTTAGCTCATCTCTTTCCCTTTTAACTGAAATGGAATAAGTTTATGTATATGAAATCAATT</canonical>
            <polymorphic>TTCTCAGATTTTCTTTTTCCAGCTTTTCAATTGTTTCCTTATTAAGTTGATTCCTCGTCTCCAGCTGCTCGGTTAAACTTTCAAGTTTCGCGGTGTTTTCAGCTTTTATCAGTACCAGCTGGAAATTAAAAAAACGTTGCGATATAAATTGAAATAAATATGCACCAACCTGGTTTGTGTGATCCTGTTCTCTTTCGTTGAATTTCTGCAAATTCTCTTCTCGCAGTTGCTTTACATTCTGTTCGTGAGCCAATTTCATTGTTGCTACTTCTTCGTCGTGCCTTTTTTGACTTTCCTTTATTTGACTGACCAGTAATCTGCAAACAAGCAACCAAATTTTCCTATTTTTGTAAAAATGGCTTTGTCGGCCGGCCCACGGCCAGAACTAATTAAACTCACTCTCTTTCCTCAATATATTTTTTCTCCGATTCCTTCCTTGCTTCAATGATCGTTTCTTCTATTCGATTTAACATTTCTTGTTCATGATTGTTTTGAAGTTYATATATTTCTTCCTGATTTTCTTTCTTTTGTTTTCCAATTCTAGCGTACAGATTCGCAAGTGCTTTACCATGTGTAGCCGTTAAGTTCAGCATCTGGATATTGAAGGAAAAATTATAATAATTGGTTTTCCATAAGCACTTTTCAACTTCAATCCAATTTATCTCGGTTTCTGTAAAAATTATCAAAAAGTGATCAACTGATAAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACACATTTTGGTTTTCTTTCACAGAGACCGTGATATAGTTGCTCAAAGTTTACTTTCTGAGACATTCTAGTAGAGTAGTGTTTACGGTAGTATCAAAAATGTTTTGTCAGTTAACTATCTTTTGAGCCATAACTAGAAGATCTTTCAAATTGCAATTTTGAAAGACTTACCTGATTGTCCTTCTCGCGGACTGATTTCCTTAGCTCATCTCTTTCCCTTTTAACTGAAATGGAATAAGTTTATGTATATGAAATCAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAAACTCACTCTCTTTCCTCAA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTATGGAAAACCAATTATTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTAAACTCACTCTCTTTCCTCAATATATTTTTTCTCCGATTCCTTCCTTGCTTCAATGATCGTTTCTTCTATTCGATTTAACATTTCTTGTTCATGATTGTTTTGAAGTTTATATATTTCTTCCTGATTTTCTTTCTTTTGTTTTCCAATTCTAGCGTACAGATTCGCAAGTGCTTTACCATGTGTAGCCGTTAAGTTCAGCATCTGGATATTGAAGGAAAAATTATAATAATTGGTTTTCCATAAGCA</canonical_amplicon>
		<polymorphic_amplicon>TTAAACTCACTCTCTTTCCTCAATATATTTTTTCTCCGATTCCTTCCTTGCTTCAATGATCGTTTCTTCTATTCGATTTAACATTTCTTGTTCATGATTGTTTTGAAGTTYATATATTTCTTCCTGATTTTCTTTCTTTTGTTTTCCAATTCTAGCGTACAGATTCGCAAGTGCTTTACCATGTGTAGCCGTTAAGTTCAGCATCTGGATATTGAAGGAAAAATTATAATAATTGGTTTTCCATAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4504</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>682569</contig_pos>
        <strand>+</strand>
        <context>TCCAATTCTA[G/T]CGTACAGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAGTTTATATATTTCTTCCTGATTTTCTTTCTTTTGTTTTCCAATTCTA</left_flank>
        <right_flank>CGTACAGATTCGCAAGTGCTTTACCATGTGTAGCCGTTAAGTTCAGCATC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTGATTCCTCGTCTCCAGCTGCTCGGTTAAACTTTCAAGTTTCGCGGTGTTTTCAGCTTTTATCAGTACCAGCTGGAAATTAAAAAAACGTTGCGATATAAATTGAAATAAATATGCACCAACCTGGTTTGTGTGATCCTGTTCTCTTTCGTTGAATTTCTGCAAATTCTCTTCTCGCAGTTGCTTTACATTCTGTTCGTGAGCCAATTTCATTGTTGCTACTTCTTCGTCGTGCCTTTTTTGACTTTCCTTTATTTGACTGACCAGTAATCTGCAAACAAGCAACCAAATTTTCCTATTTTTGTAAAAATGGCTTTGTCGGCCGGCCCACGGCCAGAACTAATTAAACTCACTCTCTTTCCTCAATATATTTTTTCTCCGATTCCTTCCTTGCTTCAATGATCGTTTCTTCTATTCGATTTAACATTTCTTGTTCATGATTGTTTTGAAGTTTATATATTTCTTCCTGATTTTCTTTCTTTTGTTTTCCAATTCTAGCGTACAGATTCGCAAGTGCTTTACCATGTGTAGCCGTTAAGTTCAGCATCTGGATATTGAAGGAAAAATTATAATAATTGGTTTTCCATAAGCACTTTTCAACTTCAATCCAATTTATCTCGGTTTCTGTAAAAATTATCAAAAAGTGATCAACTGATAAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACACATTTTGGTTTTCTTTCACAGAGACCGTGATATAGTTGCTCAAAGTTTACTTTCTGAGACATTCTAGTAGAGTAGTGTTTACGGTAGTATCAAAAATGTTTTGTCAGTTAACTATCTTTTGAGCCATAACTAGAAGATCTTTCAAATTGCAATTTTGAAAGACTTACCTGATTGTCCTTCTCGCGGACTGATTTCCTTAGCTCATCTCTTTCCCTTTTAACTGAAATGGAATAAGTTTATGTATATGAAATCAATTTCTTTTTACCATCAGCCAATTCATTTTTTACGATTTTCAGTTGT</canonical>
            <polymorphic>AGTTGATTCCTCGTCTCCAGCTGCTCGGTTAAACTTTCAAGTTTCGCGGTGTTTTCAGCTTTTATCAGTACCAGCTGGAAATTAAAAAAACGTTGCGATATAAATTGAAATAAATATGCACCAACCTGGTTTGTGTGATCCTGTTCTCTTTCGTTGAATTTCTGCAAATTCTCTTCTCGCAGTTGCTTTACATTCTGTTCGTGAGCCAATTTCATTGTTGCTACTTCTTCGTCGTGCCTTTTTTGACTTTCCTTTATTTGACTGACCAGTAATCTGCAAACAAGCAACCAAATTTTCCTATTTTTGTAAAAATGGCTTTGTCGGCCGGCCCACGGCCAGAACTAATTAAACTCACTCTCTTTCCTCAATATATTTTTTCTCCGATTCCTTCCTTGCTTCAATGATCGTTTCTTCTATTCGATTTAACATTTCTTGTTCATGATTGTTTTGAAGTTTATATATTTCTTCCTGATTTTCTTTCTTTTGTTTTCCAATTCTAKCGTACAGATTCGCAAGTGCTTTACCATGTGTAGCCGTTAAGTTCAGCATCTGGATATTGAAGGAAAAATTATAATAATTGGTTTTCCATAAGCACTTTTCAACTTCAATCCAATTTATCTCGGTTTCTGTAAAAATTATCAAAAAGTGATCAACTGATAAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACACATTTTGGTTTTCTTTCACAGAGACCGTGATATAGTTGCTCAAAGTTTACTTTCTGAGACATTCTAGTAGAGTAGTGTTTACGGTAGTATCAAAAATGTTTTGTCAGTTAACTATCTTTTGAGCCATAACTAGAAGATCTTTCAAATTGCAATTTTGAAAGACTTACCTGATTGTCCTTCTCGCGGACTGATTTCCTTAGCTCATCTCTTTCCCTTTTAACTGAAATGGAATAAGTTTATGTATATGAAATCAATTTCTTTTTACCATCAGCCAATTCATTTTTTACGATTTTCAGTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>497 267 170 66</canonical_bands>
                <polymorphic_bands>764 170 66</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAAACTCACTCTCTTTCCTCAA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTATGGAAAACCAATTATTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTAAACTCACTCTCTTTCCTCAATATATTTTTTCTCCGATTCCTTCCTTGCTTCAATGATCGTTTCTTCTATTCGATTTAACATTTCTTGTTCATGATTGTTTTGAAGTTTATATATTTCTTCCTGATTTTCTTTCTTTTGTTTTCCAATTCTAGCGTACAGATTCGCAAGTGCTTTACCATGTGTAGCCGTTAAGTTCAGCATCTGGATATTGAAGGAAAAATTATAATAATTGGTTTTCCATAAGCA</canonical_amplicon>
		<polymorphic_amplicon>TTAAACTCACTCTCTTTCCTCAATATATTTTTTCTCCGATTCCTTCCTTGCTTCAATGATCGTTTCTTCTATTCGATTTAACATTTCTTGTTCATGATTGTTTTGAAGTTTATATATTTCTTCCTGATTTTCTTTCTTTTGTTTTCCAATTCTAKCGTACAGATTCGCAAGTGCTTTACCATGTGTAGCCGTTAAGTTCAGCATCTGGATATTGAAGGAAAAATTATAATAATTGGTTTTCCATAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4505</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>685868</contig_pos>
        <strand>+</strand>
        <context>RMAGCTTTGT[A/G]GAGGAATCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCCATTCTGATTTTGATCGTTCAGAGTGATCTTTCAAAGGCAGCTTTGT</left_flank>
        <right_flank>GAGGAATCTAGGACAGAGATCTAGAACAATTTCAGACAAAAAATTATAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGCAAATGTGCTCCAATAAACATCTAGAATAGAACTCCAAATATGTAAATTCAACAGAGACCATTTAACAGAAGACATTCCGTTTGGCGTTTTAAAAATTATCATATAAGCTCCAAATAAGTGAGCGGGGTACTGAAATCCGCTCATGGAATGTAAGGTTAGTGATAAGAATTCGGCAGTGTCCAAAAATGTCACTGTTAAATTGCAGGAGGCAAGATTTTGCATCAAAATTTAACGGATCTTTCAACAGAATGGGTAAAAGTGAAATAAATTATTCAAATCACGTTTTTTTTCTTATCAGGTTAACACCTGCGTACATTCGAGACAAAATTATAGGTTTTGAACAGAAAAGGTCTTGAAAAACGAGGAAGGGAATAATAACATAGCTGGCTCCAAGTTGTGTCTGAAAAAAAGCTGACGAACTGTCTAGAAAGGGGATTTTTGAAAAGCCATTCTGATTTTGATCGTTCAGAGTGATCTTTCAAAGGCAGCTTTGTAGAGGAATCTAGGACAGAGATCTAGAACAATTTCAGACAAAAAATTATAAAACGTTAGAAGTTTTCAATGTCATTTGGAATTTTTTCAGTGTCATTTGCAAACGTTAGAAGTTAAAAGTGTCATTTGGAATGTCTACAACAAACATAGTAACGCAAAACCCAGATCTATGTATGCCGTATTAGTTCTTATGGAAGCCTATATCTATGTATACCATATACCTTATACCTTATACCTTATATTAGGTTGATGCAAAAGTTTCTTTCGATTTTGAATGCTTAACTTTGAGAATTGATATCTGGTCAGTGGGATGGTTTTTCTTGGCGGATGTTTTTTGTTAGATAGATTATTTCATGTACTTGTTGTATGCATTTTGCCTCATCCCTAATACTGGTCGTTCGCGAGCATGACGATCTCTTTCAGCCTACACCGTCTCCACTTTCGAGAATTTAGAATCGGAAGACGAATCTCGACCCGAATGTTGAATTTGGCCCTATTGAAGA</canonical>
            <polymorphic>ATTGCAAATGTGCTCCAATAAACATCTAGAATAGAACTCCAAATATGTAAATTCAACAGAGACCATTTAACAGAAGACATTCCGTTTGGCGTTTTAAAAATTATCATATAAGCTCCAAATAAGTGAGCGGGGTACTGAAATCCGCTCATGGAATGTAAGGTTAGTGATAAGAATTCGGCAGTGTCCAAAAATGTCACTGTTAAATTGCAGGAGGCAAGATTTTGCATCAAAATTTAACGGATCTTTCAACAGAATGGGTAAAAGTGAAATAAATTATTCAAATCACGTTTTTTTTCTTATCAGGTTAACACCTGCGTACATTCGAGACAAAATTATAGGTTTTGAACAGAAAAGGTCTTGAAAAACGAGGAAGGGAATAATAACATAGCTGGCTCCAAGTTGTGTCTGAAAAAAAGCTGACGAACTGTCTAGAAAGGGGATTTTTGAAAAGCCATTCTGATTTTGATCGTTCAGAGTGATCTTTCAAAGGCAGCTTTGTRGAGGAATCTAGGACAGAGATCTAGAACAATTTCAGACAAAAAATTATAAAACGTTAGAAGTTTTCAATGTCATTTGGAATTTTTTCAGTGTCATTTGCAAACGTTAGAAGTTAAAAGTGTCATTTGGAATGTCTACAACAAACATAGTAACGCAAAACCCAGATCTATGTATGCCGTATTAGTTCTTATGGAAGCCTATATCTATGTATACCATATACCTTATACCTTATACCTTATATTAGGTTGATGCAAAAGTTTCTTTCGATTTTGAATGCTTAACTTTGAGAATTGATATCTGGTCAGTGGGATGGTTTTTCTTGGCGGATGTTTTTTGTTAGATAGATTATTTCATGTACTTGTTGTATGCATTTTGCCTCATCCCTAATACTGGTCGTTCGCGAGCATGACGATCTCTTTCAGCCTACACCGTCTCCACTTTCGAGAATTTAGAATCGGAAGACGAATCTCGACCCGAATGTTGAATTTGGCCCTATTGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAACATAGCTGGCTCCAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTCCAAATGACACTTTTAACTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAACATAGCTGGCTCCAAGTTGTGTCTGAAAAAAAGCTGACGAACTGTCTAGAAAGGGGATTTTTGAAAAGCCATTCTGATTTTGATCGTTCAGAGTGATCTTTCAAAGGCAGCTTTGTAGAGGAATCTAGGACAGAGATCTAGAACAATTTCAGACAAAAAATTATAAAACGTTAGAAGTTTTCAATGTCATTTGGAATTTTTTCAGTGTCATTTGCAAACGTTAGAAGTTAAAAGTGTCATTTGGAA</canonical_amplicon>
		<polymorphic_amplicon>ATAACATAGCTGGCTCCAAGTTGTGTCTGAAAAAAAGCTGACGAACTGTCTAGAAAGGGGATTTTTGAAAAGCCATTCTGATTTTGATCGTTCAGAGTGATCTTTCAAAGGCAGCTTTGTRGAGGAATCTAGGACAGAGATCTAGAACAATTTCAGACAAAAAATTATAAAACGTTAGAAGTTTTCAATGTCATTTGGAATTTTTTCAGTGTCATTTGCAAACGTTAGAAGTTAAAAGTGTCATTTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4506</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>685859</contig_pos>
        <strand>+</strand>
        <context>CTTTCAAAGR[A/C]AGCTTTGTRG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTTGAAAAGCCATTCTGATTTTGATCGTTCAGAGTGATCTTTCAAAGG</left_flank>
        <right_flank>AGCTTTGTAGAGGAATCTAGGACAGAGATCTAGAACAATTTCAGACAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGAATGGTATTGCAAATGTGCTCCAATAAACATCTAGAATAGAACTCCAAATATGTAAATTCAACAGAGACCATTTAACAGAAGACATTCCGTTTGGCGTTTTAAAAATTATCATATAAGCTCCAAATAAGTGAGCGGGGTACTGAAATCCGCTCATGGAATGTAAGGTTAGTGATAAGAATTCGGCAGTGTCCAAAAATGTCACTGTTAAATTGCAGGAGGCAAGATTTTGCATCAAAATTTAACGGATCTTTCAACAGAATGGGTAAAAGTGAAATAAATTATTCAAATCACGTTTTTTTTCTTATCAGGTTAACACCTGCGTACATTCGAGACAAAATTATAGGTTTTGAACAGAAAAGGTCTTGAAAAACGAGGAAGGGAATAATAACATAGCTGGCTCCAAGTTGTGTCTGAAAAAAAGCTGACGAACTGTCTAGAAAGGGGATTTTTGAAAAGCCATTCTGATTTTGATCGTTCAGAGTGATCTTTCAAAGGCAGCTTTGTAGAGGAATCTAGGACAGAGATCTAGAACAATTTCAGACAAAAAATTATAAAACGTTAGAAGTTTTCAATGTCATTTGGAATTTTTTCAGTGTCATTTGCAAACGTTAGAAGTTAAAAGTGTCATTTGGAATGTCTACAACAAACATAGTAACGCAAAACCCAGATCTATGTATGCCGTATTAGTTCTTATGGAAGCCTATATCTATGTATACCATATACCTTATACCTTATACCTTATATTAGGTTGATGCAAAAGTTTCTTTCGATTTTGAATGCTTAACTTTGAGAATTGATATCTGGTCAGTGGGATGGTTTTTCTTGGCGGATGTTTTTTGTTAGATAGATTATTTCATGTACTTGTTGTATGCATTTTGCCTCATCCCTAATACTGGTCGTTCGCGAGCATGACGATCTCTTTCAGCCTACACCGTCTCCACTTTCGAGAATTTAGAATCGGAAGACGAATCTCGACCCGAATGTTGAATTTGGCCC</canonical>
            <polymorphic>ACGAATGGTATTGCAAATGTGCTCCAATAAACATCTAGAATAGAACTCCAAATATGTAAATTCAACAGAGACCATTTAACAGAAGACATTCCGTTTGGCGTTTTAAAAATTATCATATAAGCTCCAAATAAGTGAGCGGGGTACTGAAATCCGCTCATGGAATGTAAGGTTAGTGATAAGAATTCGGCAGTGTCCAAAAATGTCACTGTTAAATTGCAGGAGGCAAGATTTTGCATCAAAATTTAACGGATCTTTCAACAGAATGGGTAAAAGTGAAATAAATTATTCAAATCACGTTTTTTTTCTTATCAGGTTAACACCTGCGTACATTCGAGACAAAATTATAGGTTTTGAACAGAAAAGGTCTTGAAAAACGAGGAAGGGAATAATAACATAGCTGGCTCCAAGTTGTGTCTGAAAAAAAGCTGACGAACTGTCTAGAAAGGGGATTTTTGAAAAGCCATTCTGATTTTGATCGTTCAGAGTGATCTTTCAAAGGMAGCTTTGTAGAGGAATCTAGGACAGAGATCTAGAACAATTTCAGACAAAAAATTATAAAACGTTAGAAGTTTTCAATGTCATTTGGAATTTTTTCAGTGTCATTTGCAAACGTTAGAAGTTAAAAGTGTCATTTGGAATGTCTACAACAAACATAGTAACGCAAAACCCAGATCTATGTATGCCGTATTAGTTCTTATGGAAGCCTATATCTATGTATACCATATACCTTATACCTTATACCTTATATTAGGTTGATGCAAAAGTTTCTTTCGATTTTGAATGCTTAACTTTGAGAATTGATATCTGGTCAGTGGGATGGTTTTTCTTGGCGGATGTTTTTTGTTAGATAGATTATTTCATGTACTTGTTGTATGCATTTTGCCTCATCCCTAATACTGGTCGTTCGCGAGCATGACGATCTCTTTCAGCCTACACCGTCTCCACTTTCGAGAATTTAGAATCGGAAGACGAATCTCGACCCGAATGTTGAATTTGGCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAACATAGCTGGCTCCAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTCCAAATGACACTTTTAACTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAACATAGCTGGCTCCAAGTTGTGTCTGAAAAAAAGCTGACGAACTGTCTAGAAAGGGGATTTTTGAAAAGCCATTCTGATTTTGATCGTTCAGAGTGATCTTTCAAAGGCAGCTTTGTAGAGGAATCTAGGACAGAGATCTAGAACAATTTCAGACAAAAAATTATAAAACGTTAGAAGTTTTCAATGTCATTTGGAATTTTTTCAGTGTCATTTGCAAACGTTAGAAGTTAAAAGTGTCATTTGGAA</canonical_amplicon>
		<polymorphic_amplicon>ATAACATAGCTGGCTCCAAGTTGTGTCTGAAAAAAAGCTGACGAACTGTCTAGAAAGGGGATTTTTGAAAAGCCATTCTGATTTTGATCGTTCAGAGTGATCTTTCAAAGGMAGCTTTGTAGAGGAATCTAGGACAGAGATCTAGAACAATTTCAGACAAAAAATTATAAAACGTTAGAAGTTTTCAATGTCATTTGGAATTTTTTCAGTGTCATTTGCAAACGTTAGAAGTTAAAAGTGTCATTTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4507</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>685858</contig_pos>
        <strand>+</strand>
        <context>TCTTTCAAAG[A/G]MAGCTTTGTR</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTTGAAAAGCCATTCTGATTTTGATCGTTCAGAGTGATCTTTCAAAG</left_flank>
        <right_flank>CAGCTTTGTAGAGGAATCTAGGACAGAGATCTAGAACAATTTCAGACAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACGAATGGTATTGCAAATGTGCTCCAATAAACATCTAGAATAGAACTCCAAATATGTAAATTCAACAGAGACCATTTAACAGAAGACATTCCGTTTGGCGTTTTAAAAATTATCATATAAGCTCCAAATAAGTGAGCGGGGTACTGAAATCCGCTCATGGAATGTAAGGTTAGTGATAAGAATTCGGCAGTGTCCAAAAATGTCACTGTTAAATTGCAGGAGGCAAGATTTTGCATCAAAATTTAACGGATCTTTCAACAGAATGGGTAAAAGTGAAATAAATTATTCAAATCACGTTTTTTTTCTTATCAGGTTAACACCTGCGTACATTCGAGACAAAATTATAGGTTTTGAACAGAAAAGGTCTTGAAAAACGAGGAAGGGAATAATAACATAGCTGGCTCCAAGTTGTGTCTGAAAAAAAGCTGACGAACTGTCTAGAAAGGGGATTTTTGAAAAGCCATTCTGATTTTGATCGTTCAGAGTGATCTTTCAAAGGCAGCTTTGTAGAGGAATCTAGGACAGAGATCTAGAACAATTTCAGACAAAAAATTATAAAACGTTAGAAGTTTTCAATGTCATTTGGAATTTTTTCAGTGTCATTTGCAAACGTTAGAAGTTAAAAGTGTCATTTGGAATGTCTACAACAAACATAGTAACGCAAAACCCAGATCTATGTATGCCGTATTAGTTCTTATGGAAGCCTATATCTATGTATACCATATACCTTATACCTTATACCTTATATTAGGTTGATGCAAAAGTTTCTTTCGATTTTGAATGCTTAACTTTGAGAATTGATATCTGGTCAGTGGGATGGTTTTTCTTGGCGGATGTTTTTTGTTAGATAGATTATTTCATGTACTTGTTGTATGCATTTTGCCTCATCCCTAATACTGGTCGTTCGCGAGCATGACGATCTCTTTCAGCCTACACCGTCTCCACTTTCGAGAATTTAGAATCGGAAGACGAATCTCGACCCGAATGTTGAATTTGGCC</canonical>
            <polymorphic>AACGAATGGTATTGCAAATGTGCTCCAATAAACATCTAGAATAGAACTCCAAATATGTAAATTCAACAGAGACCATTTAACAGAAGACATTCCGTTTGGCGTTTTAAAAATTATCATATAAGCTCCAAATAAGTGAGCGGGGTACTGAAATCCGCTCATGGAATGTAAGGTTAGTGATAAGAATTCGGCAGTGTCCAAAAATGTCACTGTTAAATTGCAGGAGGCAAGATTTTGCATCAAAATTTAACGGATCTTTCAACAGAATGGGTAAAAGTGAAATAAATTATTCAAATCACGTTTTTTTTCTTATCAGGTTAACACCTGCGTACATTCGAGACAAAATTATAGGTTTTGAACAGAAAAGGTCTTGAAAAACGAGGAAGGGAATAATAACATAGCTGGCTCCAAGTTGTGTCTGAAAAAAAGCTGACGAACTGTCTAGAAAGGGGATTTTTGAAAAGCCATTCTGATTTTGATCGTTCAGAGTGATCTTTCAAAGRCAGCTTTGTAGAGGAATCTAGGACAGAGATCTAGAACAATTTCAGACAAAAAATTATAAAACGTTAGAAGTTTTCAATGTCATTTGGAATTTTTTCAGTGTCATTTGCAAACGTTAGAAGTTAAAAGTGTCATTTGGAATGTCTACAACAAACATAGTAACGCAAAACCCAGATCTATGTATGCCGTATTAGTTCTTATGGAAGCCTATATCTATGTATACCATATACCTTATACCTTATACCTTATATTAGGTTGATGCAAAAGTTTCTTTCGATTTTGAATGCTTAACTTTGAGAATTGATATCTGGTCAGTGGGATGGTTTTTCTTGGCGGATGTTTTTTGTTAGATAGATTATTTCATGTACTTGTTGTATGCATTTTGCCTCATCCCTAATACTGGTCGTTCGCGAGCATGACGATCTCTTTCAGCCTACACCGTCTCCACTTTCGAGAATTTAGAATCGGAAGACGAATCTCGACCCGAATGTTGAATTTGGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAACATAGCTGGCTCCAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTCCAAATGACACTTTTAACTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAACATAGCTGGCTCCAAGTTGTGTCTGAAAAAAAGCTGACGAACTGTCTAGAAAGGGGATTTTTGAAAAGCCATTCTGATTTTGATCGTTCAGAGTGATCTTTCAAAGGCAGCTTTGTAGAGGAATCTAGGACAGAGATCTAGAACAATTTCAGACAAAAAATTATAAAACGTTAGAAGTTTTCAATGTCATTTGGAATTTTTTCAGTGTCATTTGCAAACGTTAGAAGTTAAAAGTGTCATTTGGAA</canonical_amplicon>
		<polymorphic_amplicon>ATAACATAGCTGGCTCCAAGTTGTGTCTGAAAAAAAGCTGACGAACTGTCTAGAAAGGGGATTTTTGAAAAGCCATTCTGATTTTGATCGTTCAGAGTGATCTTTCAAAGRCAGCTTTGTAGAGGAATCTAGGACAGAGATCTAGAACAATTTCAGACAAAAAATTATAAAACGTTAGAAGTTTTCAATGTCATTTGGAATTTTTTCAGTGTCATTTGCAAACGTTAGAAGTTAAAAGTGTCATTTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4508</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>710330</contig_pos>
        <strand></strand>
        <context>CAAGGCGATT[G/A]TAGATCGGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTGGAAAATATGCGGCTAGAACTCGATCGGCCGTTATAGACAAGGCGATT</left_flank>
        <right_flank>TAGATCGGCAGGCAGCTAAATTAGACCAGGGAAGAGAATGAAAAATGATG</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGCAAAAAATCAAAAATCAACACAACTACAGTATCCAAAAGTGCCAAACGGTTGGCCTGGAAAATTATAAACTTTAAAAAAATGACCAAAAATAGTACCTTTGTAATTTGACTGTTTGCAGTCGTATGCTTTGAGCTTTTGTAAAATAATAATCTAACGGATAGAAAACTTGATAAAACGAAAATCGTAAGAAAAATGACCTGGAAAATTGAAATTTATGAAAAAAATGCCTGGATATGTCTAGAATCAGAACTTACAGATTTGTGAATCGTCCAAAAACTGTAAAAACATTTATTGACGGCGCATCCAAAAACTTTACAGTTTACAGGAACTACAAAATCATATGAGCAACATCCAAAGAGCACGATTACTTCGGATAGTGCGAATGCAATTGAAGACGTTATAATAAGCCACGCGGGAATCATAAATTTTCCAGTACGGTAGGCGATTGGAAAATATGCGGCTAGAACTCGATCGGCCGTTATAGACAAGGCGATTGTAGATCGGCAGGCAGCTAAATTAGACCAGGGAAGAGAATGAAAAATGATGATCGAACGATAATCTTGAATCAGGTCTGGAGCTCTTATAGAGAGCAATGTAATCAGGACGGAAGTGAATACTGTAATTGATTCAAAAAAATTAAAGCATCAGGAGAATCAAACTCTTCAAAATTTTCTGAAACTCCAAACATTTCTAAATCTCAGAAGTTCAAAAACTATGGAATTTTAGAAAGTATAGGAAAAATCAAGAAATCACAGACATTTCAGGGGTTTCAAAAGTTTGAAAATCAGGAAATCCAGAATATTCTAAAATTTATTTCCAAACTTACAACTGATCCCAAAACATATATCGATGATAAATCGGCAGTAGAACAATCGCATTTCGTCGTTTTTCTTAGATTTATTTCTGAAACTATTTAATTTTTTCACTTCGAATCACAGTTTCAGATTTAAAGGTGGGGGGACAGGAGATTTTCCGTAGTTTTTTTGTAGTTAGAGT</canonical>
            <polymorphic>GGGCAAAAAATCAAAAATCAACACAACTACAGTATCCAAAAGTGCCAAACGGTTGGCCTGGAAAATTATAAACTTTAAAAAAATGACCAAAAATAGTACCTTTGTAATTTGACTGTTTGCAGTCGTATGCTTTGAGCTTTTGTAAAATAATAATCTAACGGATAGAAAACTTGATAAAACGAAAATCGTAAGAAAAATGACCTGGAAAATTGAAATTTATGAAAAAAATGCCTGGATATGTCTAGAATCAGAACTTACAGATTTGTGAATCGTCCAAAAACTGTAAAAACATTTATTGACGGCGCATCCAAAAACTTTACAGTTTACAGGAACTACAAAATCATATGAGCAACATCCAAAGAGCACGATTACTTCGGATAGTGCGAATGCAATTGAAGACGTTATAATAAGCCACGCGGGAATCATAAATTTTCCAGTACGGTAGGCGATTGGAAAATATGCGGCTAGAACTCGATCGGCCGTTATAGACAAGGCGATTRTAGATCGGCAGGCAGCTAAATTAGACCAGGGAAGAGAATGAAAAATGATGATCGAACGATAATCTTGAATCAGGTCTGGAGCTCTTATAGAGAGCAATGTAATCAGGACGGAAGTGAATACTGTAATTGATTCAAAAAAATTAAAGCATCAGGAGAATCAAACTCTTCAAAATTTTCTGAAACTCCAAACATTTCTAAATCTCAGAAGTTCAAAAACTATGGAATTTTAGAAAGTATAGGAAAAATCAAGAAATCACAGACATTTCAGGGGTTTCAAAAGTTTGAAAATCAGGAAATCCAGAATATTCTAAAATTTATTTCCAAACTTACAACTGATCCCAAAACATATATCGATGATAAATCGGCAGTAGAACAATCGCATTTCGTCGTTTTTCTTAGATTTATTTCTGAAACTATTTAATTTTTTCACTTCGAATCACAGTTTCAGATTTAAAGGTGGGGGGACAGGAGATTTTCCGTAGTTTTTTTGTAGTTAGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATAAATTTTCCAGTACGGTAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGAAGAGTTTGATTCTCCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCATAAATTTTCCAGTACGGTAGGCGATTGGAAAATATGCGGCTAGAACTCGATCGGCCGTTATAGACAAGGCGATTGTAGATCGGCAGGCAGCTAAATTAGACCAGGGAAGAGAATGAAAAATGATGATCGAACGATAATCTTGAATCAGGTCTGGAGCTCTTATAGAGAGCAATGTAATCAGGACGGAAGTGAATACTGTAATTGATTCAAAAAAATTAAAGCATCAGGAGAATCAAACTCTTCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TCATAAATTTTCCAGTACGGTAGGCGATTGGAAAATATGCGGCTAGAACTCGATCGGCCGTTATAGACAAGGCGATTRTAGATCGGCAGGCAGCTAAATTAGACCAGGGAAGAGAATGAAAAATGATGATCGAACGATAATCTTGAATCAGGTCTGGAGCTCTTATAGAGAGCAATGTAATCAGGACGGAAGTGAATACTGTAATTGATTCAAAAAAATTAAAGCATCAGGAGAATCAAACTCTTCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4509</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>712673</contig_pos>
        <strand>+</strand>
        <context>ACACAACTAC[A/C]GTATCCARAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GACAAACTTCCCAATAACGAGGGCGAAAAATCAAAAATCAACACAACTAC</left_flank>
        <right_flank>GTATCCAAAAGTGCCAAACGGTTGGCCTTGGTAATTTGGCTATTCTTTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCCGTTCAAAAACCAGAAAAAGGGGGTGTCGAGCTTCAGACTCCTGAAAATGGTCAAAATCAACTGAGCAACACGTTTTTGTACATCTGATTGACAGGTTCTGTATATAGAATATTCAATTTTTTAGTGGCAGAGTTCACTGTGGAATCAAAAAAAAATATCTGAATGTGAGTTGAAATTTCAAAAACAATTCGAAAAAAAAAATCAAAATTTATTTCGTATGTACTGAAAATGTGTTTTTAGTCGACATGGAAGCCTTCCCGACTATAATTTTCTTCAATTGTTTTGGTTTTCGACTGATCAAAAACGTTGACACTATAATTGCTTCGATTGCACATCCCGTAGCTTTGCACACTCCAATATACGGACCAACGACCTAAAAACGAAGTTAGAAATTTTTAAAAAGTTTAAATTCTCACCTCGAACGAAAAGAAGGAGGCAGTCATAGACAAACTTCCCAATAACGAGGGCGAAAAATCAAAAATCAACACAACTACAGTATCCAAAAGTGCCAAACGGTTGGCCTTGGTAATTTGGCTATTCTTTGTGGCATTCTTATCGTTGAACCATAACAGTAATCGGATTGAAAGTAGGATTGATAAAATTGCGAGTGTGAGGAAAATTGTCTGAAATGAGAGATTATTATAGAAATGTGCTATAATAGAACTGATGTTCGAAGCGCTAGAGACTTGCTGGTAAGTTTGAAACAAGGGAAAGTATCTTACAGTTTTATGAAGTGTCCAAAATCTGTAGAAGCACCGATTCACTGCACATCCCAACACTCGACACCCAACTGGAACATTTAATTCATAACCGCAGAATTCGAAGAGCACCAATTCTTCCGATAACCCAAATCCAACAGAAACCGTCAAAATAATCCACATGGACATTACAAATTTTCCAGTACGGTAGGCGATTGGAAAGTAAGCAGCTAGAACTCGATCAGTGGTTATAGACAAAGCAACTATAGACCGCGCGGCTGCCAAATTAGACCAGGG</canonical>
            <polymorphic>GTTCCGTTCAAAAACCAGAAAAAGGGGGTGTCGAGCTTCAGACTCCTGAAAATGGTCAAAATCAACTGAGCAACACGTTTTTGTACATCTGATTGACAGGTTCTGTATATAGAATATTCAATTTTTTAGTGGCAGAGTTCACTGTGGAATCAAAAAAAAATATCTGAATGTGAGTTGAAATTTCAAAAACAATTCGAAAAAAAAAATCAAAATTTATTTCGTATGTACTGAAAATGTGTTTTTAGTCGACATGGAAGCCTTCCCGACTATAATTTTCTTCAATTGTTTTGGTTTTCGACTGATCAAAAACGTTGACACTATAATTGCTTCGATTGCACATCCCGTAGCTTTGCACACTCCAATATACGGACCAACGACCTAAAAACGAAGTTAGAAATTTTTAAAAAGTTTAAATTCTCACCTCGAACGAAAAGAAGGAGGCAGTCATAGACAAACTTCCCAATAACGAGGGCGAAAAATCAAAAATCAACACAACTACMGTATCCAAAAGTGCCAAACGGTTGGCCTTGGTAATTTGGCTATTCTTTGTGGCATTCTTATCGTTGAACCATAACAGTAATCGGATTGAAAGTAGGATTGATAAAATTGCGAGTGTGAGGAAAATTGTCTGAAATGAGAGATTATTATAGAAATGTGCTATAATAGAACTGATGTTCGAAGCGCTAGAGACTTGCTGGTAAGTTTGAAACAAGGGAAAGTATCTTACAGTTTTATGAAGTGTCCAAAATCTGTAGAAGCACCGATTCACTGCACATCCCAACACTCGACACCCAACTGGAACATTTAATTCATAACCGCAGAATTCGAAGAGCACCAATTCTTCCGATAACCCAAATCCAACAGAAACCGTCAAAATAATCCACATGGACATTACAAATTTTCCAGTACGGTAGGCGATTGGAAAGTAAGCAGCTAGAACTCGATCAGTGGTTATAGACAAAGCAACTATAGACCGCGCGGCTGCCAAATTAGACCAGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>496 254 217 33</canonical_bands>
                <polymorphic_bands>750 217 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGCAGTCATAGACAAACTTC</pcr_primer_p1>
		<pcr_primer_p2>GCTTCGAACATCAGTTCTATTAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAGGCAGTCATAGACAAACTTCCCAATAACGAGGGCGAAAAATCAAAAATCAACACAACTACAGTATCCAAAAGTGCCAAACGGTTGGCCTTGGTAATTTGGCTATTCTTTGTGGCATTCTTATCGTTGAACCATAACAGTAATCGGATTGAAAGTAGGATTGATAAAATTGCGAGTGTGAGGAAAATTGTCTGAAATGAGAGATTATTATAGAAATGTGCTATAATAGAACTGATGTTCGAAGC</canonical_amplicon>
		<polymorphic_amplicon>GAGGCAGTCATAGACAAACTTCCCAATAACGAGGGCGAAAAATCAAAAATCAACACAACTACMGTATCCAAAAGTGCCAAACGGTTGGCCTTGGTAATTTGGCTATTCTTTGTGGCATTCTTATCGTTGAACCATAACAGTAATCGGATTGAAAGTAGGATTGATAAAATTGCGAGTGTGAGGAAAATTGTCTGAAATGAGAGATTATTATAGAAATGTGCTATAATAGAACTGATGTTCGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4510</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>712681</contig_pos>
        <strand>+</strand>
        <context>ACMGTATCCA[A/G]AAGWGCYARA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCCAATAACGAGGGCGAAAAATCAAAAATCAACACAACTACAGTATCCA</left_flank>
        <right_flank>AAGTGCCAAACGGTTGGCCTTGGTAATTTGGCTATTCTTTGTGGCATTCT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAACCAGAAAAAGGGGGTGTCGAGCTTCAGACTCCTGAAAATGGTCAAAATCAACTGAGCAACACGTTTTTGTACATCTGATTGACAGGTTCTGTATATAGAATATTCAATTTTTTAGTGGCAGAGTTCACTGTGGAATCAAAAAAAAATATCTGAATGTGAGTTGAAATTTCAAAAACAATTCGAAAAAAAAAATCAAAATTTATTTCGTATGTACTGAAAATGTGTTTTTAGTCGACATGGAAGCCTTCCCGACTATAATTTTCTTCAATTGTTTTGGTTTTCGACTGATCAAAAACGTTGACACTATAATTGCTTCGATTGCACATCCCGTAGCTTTGCACACTCCAATATACGGACCAACGACCTAAAAACGAAGTTAGAAATTTTTAAAAAGTTTAAATTCTCACCTCGAACGAAAAGAAGGAGGCAGTCATAGACAAACTTCCCAATAACGAGGGCGAAAAATCAAAAATCAACACAACTACAGTATCCAAAAGTGCCAAACGGTTGGCCTTGGTAATTTGGCTATTCTTTGTGGCATTCTTATCGTTGAACCATAACAGTAATCGGATTGAAAGTAGGATTGATAAAATTGCGAGTGTGAGGAAAATTGTCTGAAATGAGAGATTATTATAGAAATGTGCTATAATAGAACTGATGTTCGAAGCGCTAGAGACTTGCTGGTAAGTTTGAAACAAGGGAAAGTATCTTACAGTTTTATGAAGTGTCCAAAATCTGTAGAAGCACCGATTCACTGCACATCCCAACACTCGACACCCAACTGGAACATTTAATTCATAACCGCAGAATTCGAAGAGCACCAATTCTTCCGATAACCCAAATCCAACAGAAACCGTCAAAATAATCCACATGGACATTACAAATTTTCCAGTACGGTAGGCGATTGGAAAGTAAGCAGCTAGAACTCGATCAGTGGTTATAGACAAAGCAACTATAGACCGCGCGGCTGCCAAATTAGACCAGGGAAGGGATA</canonical>
            <polymorphic>CAAAAACCAGAAAAAGGGGGTGTCGAGCTTCAGACTCCTGAAAATGGTCAAAATCAACTGAGCAACACGTTTTTGTACATCTGATTGACAGGTTCTGTATATAGAATATTCAATTTTTTAGTGGCAGAGTTCACTGTGGAATCAAAAAAAAATATCTGAATGTGAGTTGAAATTTCAAAAACAATTCGAAAAAAAAAATCAAAATTTATTTCGTATGTACTGAAAATGTGTTTTTAGTCGACATGGAAGCCTTCCCGACTATAATTTTCTTCAATTGTTTTGGTTTTCGACTGATCAAAAACGTTGACACTATAATTGCTTCGATTGCACATCCCGTAGCTTTGCACACTCCAATATACGGACCAACGACCTAAAAACGAAGTTAGAAATTTTTAAAAAGTTTAAATTCTCACCTCGAACGAAAAGAAGGAGGCAGTCATAGACAAACTTCCCAATAACGAGGGCGAAAAATCAAAAATCAACACAACTACAGTATCCARAAGTGCCAAACGGTTGGCCTTGGTAATTTGGCTATTCTTTGTGGCATTCTTATCGTTGAACCATAACAGTAATCGGATTGAAAGTAGGATTGATAAAATTGCGAGTGTGAGGAAAATTGTCTGAAATGAGAGATTATTATAGAAATGTGCTATAATAGAACTGATGTTCGAAGCGCTAGAGACTTGCTGGTAAGTTTGAAACAAGGGAAAGTATCTTACAGTTTTATGAAGTGTCCAAAATCTGTAGAAGCACCGATTCACTGCACATCCCAACACTCGACACCCAACTGGAACATTTAATTCATAACCGCAGAATTCGAAGAGCACCAATTCTTCCGATAACCCAAATCCAACAGAAACCGTCAAAATAATCCACATGGACATTACAAATTTTCCAGTACGGTAGGCGATTGGAAAGTAAGCAGCTAGAACTCGATCAGTGGTTATAGACAAAGCAACTATAGACCGCGCGGCTGCCAAATTAGACCAGGGAAGGGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGCAGTCATAGACAAACTTC</pcr_primer_p1>
		<pcr_primer_p2>GCTTCGAACATCAGTTCTATTAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAGGCAGTCATAGACAAACTTCCCAATAACGAGGGCGAAAAATCAAAAATCAACACAACTACAGTATCCAAAAGTGCCAAACGGTTGGCCTTGGTAATTTGGCTATTCTTTGTGGCATTCTTATCGTTGAACCATAACAGTAATCGGATTGAAAGTAGGATTGATAAAATTGCGAGTGTGAGGAAAATTGTCTGAAATGAGAGATTATTATAGAAATGTGCTATAATAGAACTGATGTTCGAAGC</canonical_amplicon>
		<polymorphic_amplicon>GAGGCAGTCATAGACAAACTTCCCAATAACGAGGGCGAAAAATCAAAAATCAACACAACTACAGTATCCARAAGTGCCAAACGGTTGGCCTTGGTAATTTGGCTATTCTTTGTGGCATTCTTATCGTTGAACCATAACAGTAATCGGATTGAAAGTAGGATTGATAAAATTGCGAGTGTGAGGAAAATTGTCTGAAATGAGAGATTATTATAGAAATGTGCTATAATAGAACTGATGTTCGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4511</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>712685</contig_pos>
        <strand>+</strand>
        <context>TATCCARAAG[A/T]GCYARACGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATAACGAGGGCGAAAAATCAAAAATCAACACAACTACAGTATCCAAAAG</left_flank>
        <right_flank>GCCAAACGGTTGGCCTTGGTAATTTGGCTATTCTTTGTGGCATTCTTATC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCAGAAAAAGGGGGTGTCGAGCTTCAGACTCCTGAAAATGGTCAAAATCAACTGAGCAACACGTTTTTGTACATCTGATTGACAGGTTCTGTATATAGAATATTCAATTTTTTAGTGGCAGAGTTCACTGTGGAATCAAAAAAAAATATCTGAATGTGAGTTGAAATTTCAAAAACAATTCGAAAAAAAAAATCAAAATTTATTTCGTATGTACTGAAAATGTGTTTTTAGTCGACATGGAAGCCTTCCCGACTATAATTTTCTTCAATTGTTTTGGTTTTCGACTGATCAAAAACGTTGACACTATAATTGCTTCGATTGCACATCCCGTAGCTTTGCACACTCCAATATACGGACCAACGACCTAAAAACGAAGTTAGAAATTTTTAAAAAGTTTAAATTCTCACCTCGAACGAAAAGAAGGAGGCAGTCATAGACAAACTTCCCAATAACGAGGGCGAAAAATCAAAAATCAACACAACTACAGTATCCAAAAGTGCCAAACGGTTGGCCTTGGTAATTTGGCTATTCTTTGTGGCATTCTTATCGTTGAACCATAACAGTAATCGGATTGAAAGTAGGATTGATAAAATTGCGAGTGTGAGGAAAATTGTCTGAAATGAGAGATTATTATAGAAATGTGCTATAATAGAACTGATGTTCGAAGCGCTAGAGACTTGCTGGTAAGTTTGAAACAAGGGAAAGTATCTTACAGTTTTATGAAGTGTCCAAAATCTGTAGAAGCACCGATTCACTGCACATCCCAACACTCGACACCCAACTGGAACATTTAATTCATAACCGCAGAATTCGAAGAGCACCAATTCTTCCGATAACCCAAATCCAACAGAAACCGTCAAAATAATCCACATGGACATTACAAATTTTCCAGTACGGTAGGCGATTGGAAAGTAAGCAGCTAGAACTCGATCAGTGGTTATAGACAAAGCAACTATAGACCGCGCGGCTGCCAAATTAGACCAGGGAAGGGATAACGT</canonical>
            <polymorphic>AACCAGAAAAAGGGGGTGTCGAGCTTCAGACTCCTGAAAATGGTCAAAATCAACTGAGCAACACGTTTTTGTACATCTGATTGACAGGTTCTGTATATAGAATATTCAATTTTTTAGTGGCAGAGTTCACTGTGGAATCAAAAAAAAATATCTGAATGTGAGTTGAAATTTCAAAAACAATTCGAAAAAAAAAATCAAAATTTATTTCGTATGTACTGAAAATGTGTTTTTAGTCGACATGGAAGCCTTCCCGACTATAATTTTCTTCAATTGTTTTGGTTTTCGACTGATCAAAAACGTTGACACTATAATTGCTTCGATTGCACATCCCGTAGCTTTGCACACTCCAATATACGGACCAACGACCTAAAAACGAAGTTAGAAATTTTTAAAAAGTTTAAATTCTCACCTCGAACGAAAAGAAGGAGGCAGTCATAGACAAACTTCCCAATAACGAGGGCGAAAAATCAAAAATCAACACAACTACAGTATCCAAAAGWGCCAAACGGTTGGCCTTGGTAATTTGGCTATTCTTTGTGGCATTCTTATCGTTGAACCATAACAGTAATCGGATTGAAAGTAGGATTGATAAAATTGCGAGTGTGAGGAAAATTGTCTGAAATGAGAGATTATTATAGAAATGTGCTATAATAGAACTGATGTTCGAAGCGCTAGAGACTTGCTGGTAAGTTTGAAACAAGGGAAAGTATCTTACAGTTTTATGAAGTGTCCAAAATCTGTAGAAGCACCGATTCACTGCACATCCCAACACTCGACACCCAACTGGAACATTTAATTCATAACCGCAGAATTCGAAGAGCACCAATTCTTCCGATAACCCAAATCCAACAGAAACCGTCAAAATAATCCACATGGACATTACAAATTTTCCAGTACGGTAGGCGATTGGAAAGTAAGCAGCTAGAACTCGATCAGTGGTTATAGACAAAGCAACTATAGACCGCGCGGCTGCCAAATTAGACCAGGGAAGGGATAACGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>84 79 72 67 66 64 64 62 56 49 45 44 40 38 26 21 20 19 18 17 10 10 8 7 5 5 2 2</canonical_bands>
                <polymorphic_bands>84 79 72 67 66 64 64 62 59 56 49 45 44 40 26 20 19 18 17 10 10 8 7 5 5 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGCAGTCATAGACAAACTTC</pcr_primer_p1>
		<pcr_primer_p2>GCTTCGAACATCAGTTCTATTAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAGGCAGTCATAGACAAACTTCCCAATAACGAGGGCGAAAAATCAAAAATCAACACAACTACAGTATCCAAAAGTGCCAAACGGTTGGCCTTGGTAATTTGGCTATTCTTTGTGGCATTCTTATCGTTGAACCATAACAGTAATCGGATTGAAAGTAGGATTGATAAAATTGCGAGTGTGAGGAAAATTGTCTGAAATGAGAGATTATTATAGAAATGTGCTATAATAGAACTGATGTTCGAAGC</canonical_amplicon>
		<polymorphic_amplicon>GAGGCAGTCATAGACAAACTTCCCAATAACGAGGGCGAAAAATCAAAAATCAACACAACTACAGTATCCAAAAGWGCCAAACGGTTGGCCTTGGTAATTTGGCTATTCTTTGTGGCATTCTTATCGTTGAACCATAACAGTAATCGGATTGAAAGTAGGATTGATAAAATTGCGAGTGTGAGGAAAATTGTCTGAAATGAGAGATTATTATAGAAATGTGCTATAATAGAACTGATGTTCGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4512</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>712688</contig_pos>
        <strand>+</strand>
        <context>CCARAAGWGC[C/T]ARACGGTTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACGAGGGCGAAAAATCAAAAATCAACACAACTACAGTATCCAAAAGTGC</left_flank>
        <right_flank>AAACGGTTGGCCTTGGTAATTTGGCTATTCTTTGTGGCATTCTTATCGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAAAAAGGGGGTGTCGAGCTTCAGACTCCTGAAAATGGTCAAAATCAACTGAGCAACACGTTTTTGTACATCTGATTGACAGGTTCTGTATATAGAATATTCAATTTTTTAGTGGCAGAGTTCACTGTGGAATCAAAAAAAAATATCTGAATGTGAGTTGAAATTTCAAAAACAATTCGAAAAAAAAAATCAAAATTTATTTCGTATGTACTGAAAATGTGTTTTTAGTCGACATGGAAGCCTTCCCGACTATAATTTTCTTCAATTGTTTTGGTTTTCGACTGATCAAAAACGTTGACACTATAATTGCTTCGATTGCACATCCCGTAGCTTTGCACACTCCAATATACGGACCAACGACCTAAAAACGAAGTTAGAAATTTTTAAAAAGTTTAAATTCTCACCTCGAACGAAAAGAAGGAGGCAGTCATAGACAAACTTCCCAATAACGAGGGCGAAAAATCAAAAATCAACACAACTACAGTATCCAAAAGTGCCAAACGGTTGGCCTTGGTAATTTGGCTATTCTTTGTGGCATTCTTATCGTTGAACCATAACAGTAATCGGATTGAAAGTAGGATTGATAAAATTGCGAGTGTGAGGAAAATTGTCTGAAATGAGAGATTATTATAGAAATGTGCTATAATAGAACTGATGTTCGAAGCGCTAGAGACTTGCTGGTAAGTTTGAAACAAGGGAAAGTATCTTACAGTTTTATGAAGTGTCCAAAATCTGTAGAAGCACCGATTCACTGCACATCCCAACACTCGACACCCAACTGGAACATTTAATTCATAACCGCAGAATTCGAAGAGCACCAATTCTTCCGATAACCCAAATCCAACAGAAACCGTCAAAATAATCCACATGGACATTACAAATTTTCCAGTACGGTAGGCGATTGGAAAGTAAGCAGCTAGAACTCGATCAGTGGTTATAGACAAAGCAACTATAGACCGCGCGGCTGCCAAATTAGACCAGGGAAGGGATAACGTTAC</canonical>
            <polymorphic>CAGAAAAAGGGGGTGTCGAGCTTCAGACTCCTGAAAATGGTCAAAATCAACTGAGCAACACGTTTTTGTACATCTGATTGACAGGTTCTGTATATAGAATATTCAATTTTTTAGTGGCAGAGTTCACTGTGGAATCAAAAAAAAATATCTGAATGTGAGTTGAAATTTCAAAAACAATTCGAAAAAAAAAATCAAAATTTATTTCGTATGTACTGAAAATGTGTTTTTAGTCGACATGGAAGCCTTCCCGACTATAATTTTCTTCAATTGTTTTGGTTTTCGACTGATCAAAAACGTTGACACTATAATTGCTTCGATTGCACATCCCGTAGCTTTGCACACTCCAATATACGGACCAACGACCTAAAAACGAAGTTAGAAATTTTTAAAAAGTTTAAATTCTCACCTCGAACGAAAAGAAGGAGGCAGTCATAGACAAACTTCCCAATAACGAGGGCGAAAAATCAAAAATCAACACAACTACAGTATCCAAAAGTGCYAAACGGTTGGCCTTGGTAATTTGGCTATTCTTTGTGGCATTCTTATCGTTGAACCATAACAGTAATCGGATTGAAAGTAGGATTGATAAAATTGCGAGTGTGAGGAAAATTGTCTGAAATGAGAGATTATTATAGAAATGTGCTATAATAGAACTGATGTTCGAAGCGCTAGAGACTTGCTGGTAAGTTTGAAACAAGGGAAAGTATCTTACAGTTTTATGAAGTGTCCAAAATCTGTAGAAGCACCGATTCACTGCACATCCCAACACTCGACACCCAACTGGAACATTTAATTCATAACCGCAGAATTCGAAGAGCACCAATTCTTCCGATAACCCAAATCCAACAGAAACCGTCAAAATAATCCACATGGACATTACAAATTTTCCAGTACGGTAGGCGATTGGAAAGTAAGCAGCTAGAACTCGATCAGTGGTTATAGACAAAGCAACTATAGACCGCGCGGCTGCCAAATTAGACCAGGGAAGGGATAACGTTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>BstXI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGCAGTCATAGACAAACTTC</pcr_primer_p1>
		<pcr_primer_p2>GCTTCGAACATCAGTTCTATTAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAGGCAGTCATAGACAAACTTCCCAATAACGAGGGCGAAAAATCAAAAATCAACACAACTACAGTATCCAAAAGTGCCAAACGGTTGGCCTTGGTAATTTGGCTATTCTTTGTGGCATTCTTATCGTTGAACCATAACAGTAATCGGATTGAAAGTAGGATTGATAAAATTGCGAGTGTGAGGAAAATTGTCTGAAATGAGAGATTATTATAGAAATGTGCTATAATAGAACTGATGTTCGAAGC</canonical_amplicon>
		<polymorphic_amplicon>GAGGCAGTCATAGACAAACTTCCCAATAACGAGGGCGAAAAATCAAAAATCAACACAACTACAGTATCCAAAAGTGCYAAACGGTTGGCCTTGGTAATTTGGCTATTCTTTGTGGCATTCTTATCGTTGAACCATAACAGTAATCGGATTGAAAGTAGGATTGATAAAATTGCGAGTGTGAGGAAAATTGTCTGAAATGAGAGATTATTATAGAAATGTGCTATAATAGAACTGATGTTCGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4513</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>712690</contig_pos>
        <strand>+</strand>
        <context>ARAAGWGCYA[A/G]ACGGTTGGCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAGGGCGAAAAATCAAAAATCAACACAACTACAGTATCCAAAAGTGCCA</left_flank>
        <right_flank>ACGGTTGGCCTTGGTAATTTGGCTATTCTTTGTGGCATTCTTATCGTTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAAGGGGGTGTCGAGCTTCAGACTCCTGAAAATGGTCAAAATCAACTGAGCAACACGTTTTTGTACATCTGATTGACAGGTTCTGTATATAGAATATTCAATTTTTTAGTGGCAGAGTTCACTGTGGAATCAAAAAAAAATATCTGAATGTGAGTTGAAATTTCAAAAACAATTCGAAAAAAAAAATCAAAATTTATTTCGTATGTACTGAAAATGTGTTTTTAGTCGACATGGAAGCCTTCCCGACTATAATTTTCTTCAATTGTTTTGGTTTTCGACTGATCAAAAACGTTGACACTATAATTGCTTCGATTGCACATCCCGTAGCTTTGCACACTCCAATATACGGACCAACGACCTAAAAACGAAGTTAGAAATTTTTAAAAAGTTTAAATTCTCACCTCGAACGAAAAGAAGGAGGCAGTCATAGACAAACTTCCCAATAACGAGGGCGAAAAATCAAAAATCAACACAACTACAGTATCCAAAAGTGCCAAACGGTTGGCCTTGGTAATTTGGCTATTCTTTGTGGCATTCTTATCGTTGAACCATAACAGTAATCGGATTGAAAGTAGGATTGATAAAATTGCGAGTGTGAGGAAAATTGTCTGAAATGAGAGATTATTATAGAAATGTGCTATAATAGAACTGATGTTCGAAGCGCTAGAGACTTGCTGGTAAGTTTGAAACAAGGGAAAGTATCTTACAGTTTTATGAAGTGTCCAAAATCTGTAGAAGCACCGATTCACTGCACATCCCAACACTCGACACCCAACTGGAACATTTAATTCATAACCGCAGAATTCGAAGAGCACCAATTCTTCCGATAACCCAAATCCAACAGAAACCGTCAAAATAATCCACATGGACATTACAAATTTTCCAGTACGGTAGGCGATTGGAAAGTAAGCAGCTAGAACTCGATCAGTGGTTATAGACAAAGCAACTATAGACCGCGCGGCTGCCAAATTAGACCAGGGAAGGGATAACGTTACGA</canonical>
            <polymorphic>GAAAAAGGGGGTGTCGAGCTTCAGACTCCTGAAAATGGTCAAAATCAACTGAGCAACACGTTTTTGTACATCTGATTGACAGGTTCTGTATATAGAATATTCAATTTTTTAGTGGCAGAGTTCACTGTGGAATCAAAAAAAAATATCTGAATGTGAGTTGAAATTTCAAAAACAATTCGAAAAAAAAAATCAAAATTTATTTCGTATGTACTGAAAATGTGTTTTTAGTCGACATGGAAGCCTTCCCGACTATAATTTTCTTCAATTGTTTTGGTTTTCGACTGATCAAAAACGTTGACACTATAATTGCTTCGATTGCACATCCCGTAGCTTTGCACACTCCAATATACGGACCAACGACCTAAAAACGAAGTTAGAAATTTTTAAAAAGTTTAAATTCTCACCTCGAACGAAAAGAAGGAGGCAGTCATAGACAAACTTCCCAATAACGAGGGCGAAAAATCAAAAATCAACACAACTACAGTATCCAAAAGTGCCARACGGTTGGCCTTGGTAATTTGGCTATTCTTTGTGGCATTCTTATCGTTGAACCATAACAGTAATCGGATTGAAAGTAGGATTGATAAAATTGCGAGTGTGAGGAAAATTGTCTGAAATGAGAGATTATTATAGAAATGTGCTATAATAGAACTGATGTTCGAAGCGCTAGAGACTTGCTGGTAAGTTTGAAACAAGGGAAAGTATCTTACAGTTTTATGAAGTGTCCAAAATCTGTAGAAGCACCGATTCACTGCACATCCCAACACTCGACACCCAACTGGAACATTTAATTCATAACCGCAGAATTCGAAGAGCACCAATTCTTCCGATAACCCAAATCCAACAGAAACCGTCAAAATAATCCACATGGACATTACAAATTTTCCAGTACGGTAGGCGATTGGAAAGTAAGCAGCTAGAACTCGATCAGTGGTTATAGACAAAGCAACTATAGACCGCGCGGCTGCCAAATTAGACCAGGGAAGGGATAACGTTACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGCAGTCATAGACAAACTTC</pcr_primer_p1>
		<pcr_primer_p2>GCTTCGAACATCAGTTCTATTAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAGGCAGTCATAGACAAACTTCCCAATAACGAGGGCGAAAAATCAAAAATCAACACAACTACAGTATCCAAAAGTGCCAAACGGTTGGCCTTGGTAATTTGGCTATTCTTTGTGGCATTCTTATCGTTGAACCATAACAGTAATCGGATTGAAAGTAGGATTGATAAAATTGCGAGTGTGAGGAAAATTGTCTGAAATGAGAGATTATTATAGAAATGTGCTATAATAGAACTGATGTTCGAAGC</canonical_amplicon>
		<polymorphic_amplicon>GAGGCAGTCATAGACAAACTTCCCAATAACGAGGGCGAAAAATCAAAAATCAACACAACTACAGTATCCAAAAGTGCCARACGGTTGGCCTTGGTAATTTGGCTATTCTTTGTGGCATTCTTATCGTTGAACCATAACAGTAATCGGATTGAAAGTAGGATTGATAAAATTGCGAGTGTGAGGAAAATTGTCTGAAATGAGAGATTATTATAGAAATGTGCTATAATAGAACTGATGTTCGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4514</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>712750</contig_pos>
        <strand>+</strand>
        <context>AACCATAACA[A/G]TAATCGGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTGGTAATTTGGCTATTCTTTGTGGCATTCTTATCGTTGAACCATAACA</left_flank>
        <right_flank>TAATCGGATTGAAAGTAGGATTGATAAAATTGCGAGTGTGAGGAAAATTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTGTACATCTGATTGACAGGTTCTGTATATAGAATATTCAATTTTTTAGTGGCAGAGTTCACTGTGGAATCAAAAAAAAATATCTGAATGTGAGTTGAAATTTCAAAAACAATTCGAAAAAAAAAATCAAAATTTATTTCGTATGTACTGAAAATGTGTTTTTAGTCGACATGGAAGCCTTCCCGACTATAATTTTCTTCAATTGTTTTGGTTTTCGACTGATCAAAAACGTTGACACTATAATTGCTTCGATTGCACATCCCGTAGCTTTGCACACTCCAATATACGGACCAACGACCTAAAAACGAAGTTAGAAATTTTTAAAAAGTTTAAATTCTCACCTCGAACGAAAAGAAGGAGGCAGTCATAGACAAACTTCCCAATAACGAGGGCGAAAAATCAAAAATCAACACAACTACAGTATCCAAAAGTGCCAAACGGTTGGCCTTGGTAATTTGGCTATTCTTTGTGGCATTCTTATCGTTGAACCATAACAGTAATCGGATTGAAAGTAGGATTGATAAAATTGCGAGTGTGAGGAAAATTGTCTGAAATGAGAGATTATTATAGAAATGTGCTATAATAGAACTGATGTTCGAAGCGCTAGAGACTTGCTGGTAAGTTTGAAACAAGGGAAAGTATCTTACAGTTTTATGAAGTGTCCAAAATCTGTAGAAGCACCGATTCACTGCACATCCCAACACTCGACACCCAACTGGAACATTTAATTCATAACCGCAGAATTCGAAGAGCACCAATTCTTCCGATAACCCAAATCCAACAGAAACCGTCAAAATAATCCACATGGACATTACAAATTTTCCAGTACGGTAGGCGATTGGAAAGTAAGCAGCTAGAACTCGATCAGTGGTTATAGACAAAGCAACTATAGACCGCGCGGCTGCCAAATTAGACCAGGGAAGGGATAACGTTACGATAAGATTACGGTAGGGCTCAAATGTTTCCGGGAAGTTGACGTAGAGAAAAAGGTAGAGAA</canonical>
            <polymorphic>TTTTTGTACATCTGATTGACAGGTTCTGTATATAGAATATTCAATTTTTTAGTGGCAGAGTTCACTGTGGAATCAAAAAAAAATATCTGAATGTGAGTTGAAATTTCAAAAACAATTCGAAAAAAAAAATCAAAATTTATTTCGTATGTACTGAAAATGTGTTTTTAGTCGACATGGAAGCCTTCCCGACTATAATTTTCTTCAATTGTTTTGGTTTTCGACTGATCAAAAACGTTGACACTATAATTGCTTCGATTGCACATCCCGTAGCTTTGCACACTCCAATATACGGACCAACGACCTAAAAACGAAGTTAGAAATTTTTAAAAAGTTTAAATTCTCACCTCGAACGAAAAGAAGGAGGCAGTCATAGACAAACTTCCCAATAACGAGGGCGAAAAATCAAAAATCAACACAACTACAGTATCCAAAAGTGCCAAACGGTTGGCCTTGGTAATTTGGCTATTCTTTGTGGCATTCTTATCGTTGAACCATAACARTAATCGGATTGAAAGTAGGATTGATAAAATTGCGAGTGTGAGGAAAATTGTCTGAAATGAGAGATTATTATAGAAATGTGCTATAATAGAACTGATGTTCGAAGCGCTAGAGACTTGCTGGTAAGTTTGAAACAAGGGAAAGTATCTTACAGTTTTATGAAGTGTCCAAAATCTGTAGAAGCACCGATTCACTGCACATCCCAACACTCGACACCCAACTGGAACATTTAATTCATAACCGCAGAATTCGAAGAGCACCAATTCTTCCGATAACCCAAATCCAACAGAAACCGTCAAAATAATCCACATGGACATTACAAATTTTCCAGTACGGTAGGCGATTGGAAAGTAAGCAGCTAGAACTCGATCAGTGGTTATAGACAAAGCAACTATAGACCGCGCGGCTGCCAAATTAGACCAGGGAAGGGATAACGTTACGATAAGATTACGGTAGGGCTCAAATGTTTCCGGGAAGTTGACGTAGAGAAAAAGGTAGAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>357 152 141 117 66 56 50 41 20</canonical_bands>
                <polymorphic_bands>357 208 141 117 66 50 41 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGCAGTCATAGACAAACTTC</pcr_primer_p1>
		<pcr_primer_p2>GCTTCGAACATCAGTTCTATTAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAGGCAGTCATAGACAAACTTCCCAATAACGAGGGCGAAAAATCAAAAATCAACACAACTACAGTATCCAAAAGTGCCAAACGGTTGGCCTTGGTAATTTGGCTATTCTTTGTGGCATTCTTATCGTTGAACCATAACAGTAATCGGATTGAAAGTAGGATTGATAAAATTGCGAGTGTGAGGAAAATTGTCTGAAATGAGAGATTATTATAGAAATGTGCTATAATAGAACTGATGTTCGAAGC</canonical_amplicon>
		<polymorphic_amplicon>GAGGCAGTCATAGACAAACTTCCCAATAACGAGGGCGAAAAATCAAAAATCAACACAACTACAGTATCCAAAAGTGCCAAACGGTTGGCCTTGGTAATTTGGCTATTCTTTGTGGCATTCTTATCGTTGAACCATAACARTAATCGGATTGAAAGTAGGATTGATAAAATTGCGAGTGTGAGGAAAATTGTCTGAAATGAGAGATTATTATAGAAATGTGCTATAATAGAACTGATGTTCGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4515</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>712874</contig_pos>
        <strand>+</strand>
        <context>CTTGCTGGTA[A/C]GTTTGAAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATGTGCTATAATAGAACTGATGTTCGAAGCGCTAGAGACTTGCTGGTA</left_flank>
        <right_flank>GTTTGAAACAAGGGAAAGTATCTTACAGTTTTATGAAGTGTCCAAAATCT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATCAAAATTTATTTCGTATGTACTGAAAATGTGTTTTTAGTCGACATGGAAGCCTTCCCGACTATAATTTTCTTCAATTGTTTTGGTTTTCGACTGATCAAAAACGTTGACACTATAATTGCTTCGATTGCACATCCCGTAGCTTTGCACACTCCAATATACGGACCAACGACCTAAAAACGAAGTTAGAAATTTTTAAAAAGTTTAAATTCTCACCTCGAACGAAAAGAAGGAGGCAGTCATAGACAAACTTCCCAATAACGAGGGCGAAAAATCAAAAATCAACACAACTACAGTATCCAAAAGTGCCAAACGGTTGGCCTTGGTAATTTGGCTATTCTTTGTGGCATTCTTATCGTTGAACCATAACAGTAATCGGATTGAAAGTAGGATTGATAAAATTGCGAGTGTGAGGAAAATTGTCTGAAATGAGAGATTATTATAGAAATGTGCTATAATAGAACTGATGTTCGAAGCGCTAGAGACTTGCTGGTAAGTTTGAAACAAGGGAAAGTATCTTACAGTTTTATGAAGTGTCCAAAATCTGTAGAAGCACCGATTCACTGCACATCCCAACACTCGACACCCAACTGGAACATTTAATTCATAACCGCAGAATTCGAAGAGCACCAATTCTTCCGATAACCCAAATCCAACAGAAACCGTCAAAATAATCCACATGGACATTACAAATTTTCCAGTACGGTAGGCGATTGGAAAGTAAGCAGCTAGAACTCGATCAGTGGTTATAGACAAAGCAACTATAGACCGCGCGGCTGCCAAATTAGACCAGGGAAGGGATAACGTTACGATAAGATTACGGTAGGGCTCAAATGTTTCCGGGAAGTTGACGTAGAGAAAAAGGTAGAGAAGAGAAGGGAATACTGGAAAGTTGGGCTGTTTGAAAAATTAAAAAAAATTGAAACTTACGACAGGACCCAAAACATATATCCAGGACGAATCGGTAGTAGAAAAGTCGCATTTCGTCGTTTTGCT</canonical>
            <polymorphic>AAAAATCAAAATTTATTTCGTATGTACTGAAAATGTGTTTTTAGTCGACATGGAAGCCTTCCCGACTATAATTTTCTTCAATTGTTTTGGTTTTCGACTGATCAAAAACGTTGACACTATAATTGCTTCGATTGCACATCCCGTAGCTTTGCACACTCCAATATACGGACCAACGACCTAAAAACGAAGTTAGAAATTTTTAAAAAGTTTAAATTCTCACCTCGAACGAAAAGAAGGAGGCAGTCATAGACAAACTTCCCAATAACGAGGGCGAAAAATCAAAAATCAACACAACTACAGTATCCAAAAGTGCCAAACGGTTGGCCTTGGTAATTTGGCTATTCTTTGTGGCATTCTTATCGTTGAACCATAACAGTAATCGGATTGAAAGTAGGATTGATAAAATTGCGAGTGTGAGGAAAATTGTCTGAAATGAGAGATTATTATAGAAATGTGCTATAATAGAACTGATGTTCGAAGCGCTAGAGACTTGCTGGTAMGTTTGAAACAAGGGAAAGTATCTTACAGTTTTATGAAGTGTCCAAAATCTGTAGAAGCACCGATTCACTGCACATCCCAACACTCGACACCCAACTGGAACATTTAATTCATAACCGCAGAATTCGAAGAGCACCAATTCTTCCGATAACCCAAATCCAACAGAAACCGTCAAAATAATCCACATGGACATTACAAATTTTCCAGTACGGTAGGCGATTGGAAAGTAAGCAGCTAGAACTCGATCAGTGGTTATAGACAAAGCAACTATAGACCGCGCGGCTGCCAAATTAGACCAGGGAAGGGATAACGTTACGATAAGATTACGGTAGGGCTCAAATGTTTCCGGGAAGTTGACGTAGAGAAAAAGGTAGAGAAGAGAAGGGAATACTGGAAAGTTGGGCTGTTTGAAAAATTAAAAAAAATTGAAACTTACGACAGGACCCAAAACATATATCCAGGACGAATCGGTAGTAGAAAAGTCGCATTTCGTCGTTTTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTGTCTGAAATGAGAGAT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTGTTGGATTTGGGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTGTCTGAAATGAGAGATTATTATAGAAATGTGCTATAATAGAACTGATGTTCGAAGCGCTAGAGACTTGCTGGTAAGTTTGAAACAAGGGAAAGTATCTTACAGTTTTATGAAGTGTCCAAAATCTGTAGAAGCACCGATTCACTGCACATCCCAACACTCGACACCCAACTGGAACATTTAATTCATAACCGCAGAATTCGAAGAGCACCAATTCTTCCGATAACCCAAATCCAACAGAAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTGTCTGAAATGAGAGATTATTATAGAAATGTGCTATAATAGAACTGATGTTCGAAGCGCTAGAGACTTGCTGGTAMGTTTGAAACAAGGGAAAGTATCTTACAGTTTTATGAAGTGTCCAAAATCTGTAGAAGCACCGATTCACTGCACATCCCAACACTCGACACCCAACTGGAACATTTAATTCATAACCGCAGAATTCGAAGAGCACCAATTCTTCCGATAACCCAAATCCAACAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4516</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>712887</contig_pos>
        <strand>+</strand>
        <context>TTGAAACAAG[A/G]GAAAGTATCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGAACTGATGTTCGAAGCGCTAGAGACTTGCTGGTAAGTTTGAAACAAG</left_flank>
        <right_flank>GAAAGTATCTTACAGTTTTATGAAGTGTCCAAAATCTGTAGAAGCACCGA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTCGTATGTACTGAAAATGTGTTTTTAGTCGACATGGAAGCCTTCCCGACTATAATTTTCTTCAATTGTTTTGGTTTTCGACTGATCAAAAACGTTGACACTATAATTGCTTCGATTGCACATCCCGTAGCTTTGCACACTCCAATATACGGACCAACGACCTAAAAACGAAGTTAGAAATTTTTAAAAAGTTTAAATTCTCACCTCGAACGAAAAGAAGGAGGCAGTCATAGACAAACTTCCCAATAACGAGGGCGAAAAATCAAAAATCAACACAACTACAGTATCCAAAAGTGCCAAACGGTTGGCCTTGGTAATTTGGCTATTCTTTGTGGCATTCTTATCGTTGAACCATAACAGTAATCGGATTGAAAGTAGGATTGATAAAATTGCGAGTGTGAGGAAAATTGTCTGAAATGAGAGATTATTATAGAAATGTGCTATAATAGAACTGATGTTCGAAGCGCTAGAGACTTGCTGGTAAGTTTGAAACAAGGGAAAGTATCTTACAGTTTTATGAAGTGTCCAAAATCTGTAGAAGCACCGATTCACTGCACATCCCAACACTCGACACCCAACTGGAACATTTAATTCATAACCGCAGAATTCGAAGAGCACCAATTCTTCCGATAACCCAAATCCAACAGAAACCGTCAAAATAATCCACATGGACATTACAAATTTTCCAGTACGGTAGGCGATTGGAAAGTAAGCAGCTAGAACTCGATCAGTGGTTATAGACAAAGCAACTATAGACCGCGCGGCTGCCAAATTAGACCAGGGAAGGGATAACGTTACGATAAGATTACGGTAGGGCTCAAATGTTTCCGGGAAGTTGACGTAGAGAAAAAGGTAGAGAAGAGAAGGGAATACTGGAAAGTTGGGCTGTTTGAAAAATTAAAAAAAATTGAAACTTACGACAGGACCCAAAACATATATCCAGGACGAATCGGTAGTAGAAAAGTCGCATTTCGTCGTTTTGCTTTGATTTGTTTCT</canonical>
            <polymorphic>TATTTCGTATGTACTGAAAATGTGTTTTTAGTCGACATGGAAGCCTTCCCGACTATAATTTTCTTCAATTGTTTTGGTTTTCGACTGATCAAAAACGTTGACACTATAATTGCTTCGATTGCACATCCCGTAGCTTTGCACACTCCAATATACGGACCAACGACCTAAAAACGAAGTTAGAAATTTTTAAAAAGTTTAAATTCTCACCTCGAACGAAAAGAAGGAGGCAGTCATAGACAAACTTCCCAATAACGAGGGCGAAAAATCAAAAATCAACACAACTACAGTATCCAAAAGTGCCAAACGGTTGGCCTTGGTAATTTGGCTATTCTTTGTGGCATTCTTATCGTTGAACCATAACAGTAATCGGATTGAAAGTAGGATTGATAAAATTGCGAGTGTGAGGAAAATTGTCTGAAATGAGAGATTATTATAGAAATGTGCTATAATAGAACTGATGTTCGAAGCGCTAGAGACTTGCTGGTAAGTTTGAAACAAGRGAAAGTATCTTACAGTTTTATGAAGTGTCCAAAATCTGTAGAAGCACCGATTCACTGCACATCCCAACACTCGACACCCAACTGGAACATTTAATTCATAACCGCAGAATTCGAAGAGCACCAATTCTTCCGATAACCCAAATCCAACAGAAACCGTCAAAATAATCCACATGGACATTACAAATTTTCCAGTACGGTAGGCGATTGGAAAGTAAGCAGCTAGAACTCGATCAGTGGTTATAGACAAAGCAACTATAGACCGCGCGGCTGCCAAATTAGACCAGGGAAGGGATAACGTTACGATAAGATTACGGTAGGGCTCAAATGTTTCCGGGAAGTTGACGTAGAGAAAAAGGTAGAGAAGAGAAGGGAATACTGGAAAGTTGGGCTGTTTGAAAAATTAAAAAAAATTGAAACTTACGACAGGACCCAAAACATATATCCAGGACGAATCGGTAGTAGAAAAGTCGCATTTCGTCGTTTTGCTTTGATTTGTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTGTCTGAAATGAGAGAT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTGTTGGATTTGGGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTGTCTGAAATGAGAGATTATTATAGAAATGTGCTATAATAGAACTGATGTTCGAAGCGCTAGAGACTTGCTGGTAAGTTTGAAACAAGGGAAAGTATCTTACAGTTTTATGAAGTGTCCAAAATCTGTAGAAGCACCGATTCACTGCACATCCCAACACTCGACACCCAACTGGAACATTTAATTCATAACCGCAGAATTCGAAGAGCACCAATTCTTCCGATAACCCAAATCCAACAGAAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTGTCTGAAATGAGAGATTATTATAGAAATGTGCTATAATAGAACTGATGTTCGAAGCGCTAGAGACTTGCTGGTAAGTTTGAAACAAGRGAAAGTATCTTACAGTTTTATGAAGTGTCCAAAATCTGTAGAAGCACCGATTCACTGCACATCCCAACACTCGACACCCAACTGGAACATTTAATTCATAACCGCAGAATTCGAAGAGCACCAATTCTTCCGATAACCCAAATCCAACAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4518</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>720595</contig_pos>
        <strand></strand>
        <context>AGCGATAGTA[G/A]CTTTGCATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAAATTTCCCGAAAAATTTCAGCCAATTTTTTTTACAGACAGCGATAGTA</left_flank>
        <right_flank>CTTTGCATTTCACTCTAACTATGAAATGACTGAAATTGGGATGACCAACC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAAGTGGACGATTCACACAAAAGAACGAAAAAGTCCCGGAAAAACCTTCGGCCCCCAAGTAATGTATTTGAAAAACTAAAGAAACACTATTCACTCAAAAAACCAATGTAACCTGAAAGGAGAAGACAGCAAAAACGCACTGTATTCTATTAAACACTATTTATTGAATCAACAATAAATCACTAGAAAACCTTTAAAACCAGTGAGCCACACTTTAACGGGTCGTCACCAATCGTGAGCGAACACCAGCGAAAACTAAAGAAAACGATGAGAATTTGCCGAGAGAGGAGACGCGTTTTGGCGCGCACACAGTTTCGCGCGCGGATACAGTAATCCACACCTCTTGCACGTGTGTTCGGGGGAGATTTCTCTCCTTTAGACTTGGAAAGAGGATTTTAAAAGAGAAAACACGGTAGAATACCGTACAGGTATACCTTTTTTATTTCAGAAATTTCCCGAAAAATTTCAGCCAATTTTTTTTACAGACAGCGATAGTAGCTTTGCATTTCACTCTAACTATGAAATGACTGAAATTGGGATGACCAACCTAAAATCAACTTCCTGTGAAATTTGGTTGAATAATCTGCCTAAGTTAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAATTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATTTGAAGCGGTTTTGATCACTTGCTCTTGAGATGTGCTCACTGTAGCATAAAAGGTATGGTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGTTTTTTTCA</canonical>
            <polymorphic>ATCAAGTGGACGATTCACACAAAAGAACGAAAAAGTCCCGGAAAAACCTTCGGCCCCCAAGTAATGTATTTGAAAAACTAAAGAAACACTATTCACTCAAAAAACCAATGTAACCTGAAAGGAGAAGACAGCAAAAACGCACTGTATTCTATTAAACACTATTTATTGAATCAACAATAAATCACTAGAAAACCTTTAAAACCAGTGAGCCACACTTTAACGGGTCGTCACCAATCGTGAGCGAACACCAGCGAAAACTAAAGAAAACGATGAGAATTTGCCGAGAGAGGAGACGCGTTTTGGCGCGCACACAGTTTCGCGCGCGGATACAGTAATCCACACCTCTTGCACGTGTGTTCGGGGGAGATTTCTCTCCTTTAGACTTGGAAAGAGGATTTTAAAAGAGAAAACACGGTAGAATACCGTACAGGTATACCTTTTTTATTTCAGAAATTTCCCGAAAAATTTCAGCCAATTTTTTTTACAGACAGCGATAGTARCTTTGCATTTCACTCTAACTATGAAATGACTGAAATTGGGATGACCAACCTAAAATCAACTTCCTGTGAAATTTGGTTGAATAATCTGCCTAAGTTAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAATTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATTTGAAGCGGTTTTGATCACTTGCTCTTGAGATGTGCTCACTGTAGCATAAAAGGTATGGTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGTTTTTTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>500 280 117 103</canonical_bands>
                <polymorphic_bands>603 280 117</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>262 156 129 122 117 103 53 29 18 11</canonical_bands>
                <polymorphic_bands>262 156 132 129 122 117 53 18 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACACAAAAGAACGAAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>AGTTGATTTTAGGTTGGTCATC</pcr_primer_p2>
		<pcr_amplicon_size>546</pcr_amplicon_size>
		<canonical_amplicon>CACACAAAAGAACGAAAAAGTCCCGGAAAAACCTTCGGCCCCCAAGTAATGTATTTGAAAAACTAAAGAAACACTATTCACTCAAAAAACCAATGTAACCTGAAAGGAGAAGACAGCAAAAACGCACTGTATTCTATTAAACACTATTTATTGAATCAACAATAAATCACTAGAAAACCTTTAAAACCAGTGAGCCACACTTTAACGGGTCGTCACCAATCGTGAGCGAACACCAGCGAAAACTAAAGAAAACGATGAGAATTTGCCGAGAGAGGAGACGCGTTTTGGCGCGCACACAGTTTCGCGCGCGGATACAGTAATCCACACCTCTTGCACGTGTGTTCGGGGGAGATTTCTCTCCTTTAGACTTGGAAAGAGGATTTTAAAAGAGAAAACACGGTAGAATACCGTACAGGTATACCTTTTTTATTTCAGAAATTTCCCGAAAAATTTCAGCCAATTTTTTTTACAGACAGCGATAGTAGCTTTGCATTTCACTCTAACTATGAAATGACTGAAATTGGGATGACCAACCTAAAATCAACT</canonical_amplicon>
		<polymorphic_amplicon>CACACAAAAGAACGAAAAAGTCCCGGAAAAACCTTCGGCCCCCAAGTAATGTATTTGAAAAACTAAAGAAACACTATTCACTCAAAAAACCAATGTAACCTGAAAGGAGAAGACAGCAAAAACGCACTGTATTCTATTAAACACTATTTATTGAATCAACAATAAATCACTAGAAAACCTTTAAAACCAGTGAGCCACACTTTAACGGGTCGTCACCAATCGTGAGCGAACACCAGCGAAAACTAAAGAAAACGATGAGAATTTGCCGAGAGAGGAGACGCGTTTTGGCGCGCACACAGTTTCGCGCGCGGATACAGTAATCCACACCTCTTGCACGTGTGTTCGGGGGAGATTTCTCTCCTTTAGACTTGGAAAGAGGATTTTAAAAGAGAAAACACGGTAGAATACCGTACAGGTATACCTTTTTTATTTCAGAAATTTCCCGAAAAATTTCAGCCAATTTTTTTTACAGACAGCGATAGTARCTTTGCATTTCACTCTAACTATGAAATGACTGAAATTGGGATGACCAACCTAAAATCAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4520</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1058262</contig_pos>
        <strand>+</strand>
        <context>GTACTGTAAC[C/T]TTTTTKKACC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTCAAGTACAAATTTTCTTATTGTGATTCTCTGTTCAAGGTACTGTAAC</left_flank>
        <right_flank>TTTTTGGACCTATGTCAAATTATTTCAGAAAATTAGCAAGCAAATTTTTA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAAAGACGCAATTATATATTTCTCCCCGCCACCTAAGAGTTATCTTTTCCAATTTAGCATTCCAAGTTGATATCGCTATGTGTTGAGTTTCTTTTTCTCCAACCAGATATTCTGTCATCAGCTTTTTTACTTTAAATCAAAGTTCAATTGCTTAAACTTCAATGAATATTTTATTCAGGTGTTTCTTTTTATTTCCAGATCCAATAACCATCAAGTTCTTGCTCCTAACTTTTTTGCTCAAATTTGAGACGATAAAAAAAATATCATGACGTCATTTAGACAATGTGAAGTGAACTTTGATGTAGATCAAAATAATTCTGAATTTTCCTTATGGAAGTCTACATGAAGTGTGATAAGAAGGCACAAAGAAACTTGATAAATCACATTTTTGATGAATTGCACAACGTTATGTGTCGATAATGAAAGAAAAGATTTTAATGAACAAAACTTCAAGTACAAATTTTCTTATTGTGATTCTCTGTTCAAGGTACTGTAACTTTTTTGGACCTATGTCAAATTATTTCAGAAAATTAGCAAGCAAATTTTTATTTTTAAATCTGAAGTACAGATCCTGAACCGAGTATTAAAAAATGTAATAAATAAATTGAGATATTATCGAGATCGCAATTTCAAAAAGAAATAAAAGGAGCATCTAAAGTTTCTCTTCTTCACGCTTTCCCTCTTCAACATCAGATCCCCATCCAACTTCAAGTTTCTTATCCAAAATTGGCGATTCTTTCAAATTATTGGTTTCAGTGGCTTCAATTTTTAAAGAACTTCTACCGGACCCGCCAATCACACTTTCGATAAGCATCTTTTCTAGTCTGAAATTAGCTTTTCAGTTTTTGGAAGTCAATTATCGGACTCACTTTAAGATTGGAACCTCAAACAAGCAACTCCAGAAGAAAGCCAGCACGTATGATAGGAGTGTGGCAGGTATGGCAACGTACAAAAACTGAAAAAAAAACTTATAGAATAATTTTCCAAAAATATTTACT</canonical>
            <polymorphic>ATCAAAGACGCAATTATATATTTCTCCCCGCCACCTAAGAGTTATCTTTTCCAATTTAGCATTCCAAGTTGATATCGCTATGTGTTGAGTTTCTTTTTCTCCAACCAGATATTCTGTCATCAGCTTTTTTACTTTAAATCAAAGTTCAATTGCTTAAACTTCAATGAATATTTTATTCAGGTGTTTCTTTTTATTTCCAGATCCAATAACCATCAAGTTCTTGCTCCTAACTTTTTTGCTCAAATTTGAGACGATAAAAAAAATATCATGACGTCATTTAGACAATGTGAAGTGAACTTTGATGTAGATCAAAATAATTCTGAATTTTCCTTATGGAAGTCTACATGAAGTGTGATAAGAAGGCACAAAGAAACTTGATAAATCACATTTTTGATGAATTGCACAACGTTATGTGTCGATAATGAAAGAAAAGATTTTAATGAACAAAACTTCAAGTACAAATTTTCTTATTGTGATTCTCTGTTCAAGGTACTGTAACYTTTTTGGACCTATGTCAAATTATTTCAGAAAATTAGCAAGCAAATTTTTATTTTTAAATCTGAAGTACAGATCCTGAACCGAGTATTAAAAAATGTAATAAATAAATTGAGATATTATCGAGATCGCAATTTCAAAAAGAAATAAAAGGAGCATCTAAAGTTTCTCTTCTTCACGCTTTCCCTCTTCAACATCAGATCCCCATCCAACTTCAAGTTTCTTATCCAAAATTGGCGATTCTTTCAAATTATTGGTTTCAGTGGCTTCAATTTTTAAAGAACTTCTACCGGACCCGCCAATCACACTTTCGATAAGCATCTTTTCTAGTCTGAAATTAGCTTTTCAGTTTTTGGAAGTCAATTATCGGACTCACTTTAAGATTGGAACCTCAAACAAGCAACTCCAGAAGAAAGCCAGCACGTATGATAGGAGTGTGGCAGGTATGGCAACGTACAAAAACTGAAAAAAAAACTTATAGAATAATTTTCCAAAAATATTTACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCGATAATGAAAGAAAAGATT</pcr_primer_p1>
		<pcr_primer_p2>GAGAAACTTTAGATGCTCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TGTCGATAATGAAAGAAAAGATTTTAATGAACAAAACTTCAAGTACAAATTTTCTTATTGTGATTCTCTGTTCAAGGTACTGTAACTTTTTTGGACCTATGTCAAATTATTTCAGAAAATTAGCAAGCAAATTTTTATTTTTAAATCTGAAGTACAGATCCTGAACCGAGTATTAAAAAATGTAATAAATAAATTGAGATATTATCGAGATCGCAATTTCAAAAAGAAATAAAAGGAGCATCTAAAGTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>TGTCGATAATGAAAGAAAAGATTTTAATGAACAAAACTTCAAGTACAAATTTTCTTATTGTGATTCTCTGTTCAAGGTACTGTAACYTTTTTGGACCTATGTCAAATTATTTCAGAAAATTAGCAAGCAAATTTTTATTTTTAAATCTGAAGTACAGATCCTGAACCGAGTATTAAAAAATGTAATAAATAAATTGAGATATTATCGAGATCGCAATTTCAAAAAGAAATAAAAGGAGCATCTAAAGTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4521</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1058268</contig_pos>
        <strand>+</strand>
        <context>TAACYTTTTT[G/T]KACCTATGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTACAAATTTTCTTATTGTGATTCTCTGTTCAAGGTACTGTAACTTTTTT</left_flank>
        <right_flank>GACCTATGTCAAATTATTTCAGAAAATTAGCAAGCAAATTTTTATTTTTA</right_flank>
        <qual_score>149</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACGCAATTATATATTTCTCCCCGCCACCTAAGAGTTATCTTTTCCAATTTAGCATTCCAAGTTGATATCGCTATGTGTTGAGTTTCTTTTTCTCCAACCAGATATTCTGTCATCAGCTTTTTTACTTTAAATCAAAGTTCAATTGCTTAAACTTCAATGAATATTTTATTCAGGTGTTTCTTTTTATTTCCAGATCCAATAACCATCAAGTTCTTGCTCCTAACTTTTTTGCTCAAATTTGAGACGATAAAAAAAATATCATGACGTCATTTAGACAATGTGAAGTGAACTTTGATGTAGATCAAAATAATTCTGAATTTTCCTTATGGAAGTCTACATGAAGTGTGATAAGAAGGCACAAAGAAACTTGATAAATCACATTTTTGATGAATTGCACAACGTTATGTGTCGATAATGAAAGAAAAGATTTTAATGAACAAAACTTCAAGTACAAATTTTCTTATTGTGATTCTCTGTTCAAGGTACTGTAACTTTTTTGGACCTATGTCAAATTATTTCAGAAAATTAGCAAGCAAATTTTTATTTTTAAATCTGAAGTACAGATCCTGAACCGAGTATTAAAAAATGTAATAAATAAATTGAGATATTATCGAGATCGCAATTTCAAAAAGAAATAAAAGGAGCATCTAAAGTTTCTCTTCTTCACGCTTTCCCTCTTCAACATCAGATCCCCATCCAACTTCAAGTTTCTTATCCAAAATTGGCGATTCTTTCAAATTATTGGTTTCAGTGGCTTCAATTTTTAAAGAACTTCTACCGGACCCGCCAATCACACTTTCGATAAGCATCTTTTCTAGTCTGAAATTAGCTTTTCAGTTTTTGGAAGTCAATTATCGGACTCACTTTAAGATTGGAACCTCAAACAAGCAACTCCAGAAGAAAGCCAGCACGTATGATAGGAGTGTGGCAGGTATGGCAACGTACAAAAACTGAAAAAAAAACTTATAGAATAATTTTCCAAAAATATTTACTCACCAC</canonical>
            <polymorphic>GACGCAATTATATATTTCTCCCCGCCACCTAAGAGTTATCTTTTCCAATTTAGCATTCCAAGTTGATATCGCTATGTGTTGAGTTTCTTTTTCTCCAACCAGATATTCTGTCATCAGCTTTTTTACTTTAAATCAAAGTTCAATTGCTTAAACTTCAATGAATATTTTATTCAGGTGTTTCTTTTTATTTCCAGATCCAATAACCATCAAGTTCTTGCTCCTAACTTTTTTGCTCAAATTTGAGACGATAAAAAAAATATCATGACGTCATTTAGACAATGTGAAGTGAACTTTGATGTAGATCAAAATAATTCTGAATTTTCCTTATGGAAGTCTACATGAAGTGTGATAAGAAGGCACAAAGAAACTTGATAAATCACATTTTTGATGAATTGCACAACGTTATGTGTCGATAATGAAAGAAAAGATTTTAATGAACAAAACTTCAAGTACAAATTTTCTTATTGTGATTCTCTGTTCAAGGTACTGTAACTTTTTTKGACCTATGTCAAATTATTTCAGAAAATTAGCAAGCAAATTTTTATTTTTAAATCTGAAGTACAGATCCTGAACCGAGTATTAAAAAATGTAATAAATAAATTGAGATATTATCGAGATCGCAATTTCAAAAAGAAATAAAAGGAGCATCTAAAGTTTCTCTTCTTCACGCTTTCCCTCTTCAACATCAGATCCCCATCCAACTTCAAGTTTCTTATCCAAAATTGGCGATTCTTTCAAATTATTGGTTTCAGTGGCTTCAATTTTTAAAGAACTTCTACCGGACCCGCCAATCACACTTTCGATAAGCATCTTTTCTAGTCTGAAATTAGCTTTTCAGTTTTTGGAAGTCAATTATCGGACTCACTTTAAGATTGGAACCTCAAACAAGCAACTCCAGAAGAAAGCCAGCACGTATGATAGGAGTGTGGCAGGTATGGCAACGTACAAAAACTGAAAAAAAAACTTATAGAATAATTTTCCAAAAATATTTACTCACCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>500 281 219</canonical_bands>
                <polymorphic_bands>781 219</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 281 219</canonical_bands>
                <polymorphic_bands>781 219</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTCGATAATGAAAGAAAAGATT</pcr_primer_p1>
		<pcr_primer_p2>GAGAAACTTTAGATGCTCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TGTCGATAATGAAAGAAAAGATTTTAATGAACAAAACTTCAAGTACAAATTTTCTTATTGTGATTCTCTGTTCAAGGTACTGTAACTTTTTTGGACCTATGTCAAATTATTTCAGAAAATTAGCAAGCAAATTTTTATTTTTAAATCTGAAGTACAGATCCTGAACCGAGTATTAAAAAATGTAATAAATAAATTGAGATATTATCGAGATCGCAATTTCAAAAAGAAATAAAAGGAGCATCTAAAGTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>TGTCGATAATGAAAGAAAAGATTTTAATGAACAAAACTTCAAGTACAAATTTTCTTATTGTGATTCTCTGTTCAAGGTACTGTAACTTTTTTKGACCTATGTCAAATTATTTCAGAAAATTAGCAAGCAAATTTTTATTTTTAAATCTGAAGTACAGATCCTGAACCGAGTATTAAAAAATGTAATAAATAAATTGAGATATTATCGAGATCGCAATTTCAAAAAGAAATAAAAGGAGCATCTAAAGTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4522</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1058269</contig_pos>
        <strand>+</strand>
        <context>AACYTTTTTK[G/T]ACCTATGTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TACAAATTTTCTTATTGTGATTCTCTGTTCAAGGTACTGTAACTTTTTTG</left_flank>
        <right_flank>ACCTATGTCAAATTATTTCAGAAAATTAGCAAGCAAATTTTTATTTTTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGCAATTATATATTTCTCCCCGCCACCTAAGAGTTATCTTTTCCAATTTAGCATTCCAAGTTGATATCGCTATGTGTTGAGTTTCTTTTTCTCCAACCAGATATTCTGTCATCAGCTTTTTTACTTTAAATCAAAGTTCAATTGCTTAAACTTCAATGAATATTTTATTCAGGTGTTTCTTTTTATTTCCAGATCCAATAACCATCAAGTTCTTGCTCCTAACTTTTTTGCTCAAATTTGAGACGATAAAAAAAATATCATGACGTCATTTAGACAATGTGAAGTGAACTTTGATGTAGATCAAAATAATTCTGAATTTTCCTTATGGAAGTCTACATGAAGTGTGATAAGAAGGCACAAAGAAACTTGATAAATCACATTTTTGATGAATTGCACAACGTTATGTGTCGATAATGAAAGAAAAGATTTTAATGAACAAAACTTCAAGTACAAATTTTCTTATTGTGATTCTCTGTTCAAGGTACTGTAACTTTTTTGGACCTATGTCAAATTATTTCAGAAAATTAGCAAGCAAATTTTTATTTTTAAATCTGAAGTACAGATCCTGAACCGAGTATTAAAAAATGTAATAAATAAATTGAGATATTATCGAGATCGCAATTTCAAAAAGAAATAAAAGGAGCATCTAAAGTTTCTCTTCTTCACGCTTTCCCTCTTCAACATCAGATCCCCATCCAACTTCAAGTTTCTTATCCAAAATTGGCGATTCTTTCAAATTATTGGTTTCAGTGGCTTCAATTTTTAAAGAACTTCTACCGGACCCGCCAATCACACTTTCGATAAGCATCTTTTCTAGTCTGAAATTAGCTTTTCAGTTTTTGGAAGTCAATTATCGGACTCACTTTAAGATTGGAACCTCAAACAAGCAACTCCAGAAGAAAGCCAGCACGTATGATAGGAGTGTGGCAGGTATGGCAACGTACAAAAACTGAAAAAAAAACTTATAGAATAATTTTCCAAAAATATTTACTCACCACT</canonical>
            <polymorphic>ACGCAATTATATATTTCTCCCCGCCACCTAAGAGTTATCTTTTCCAATTTAGCATTCCAAGTTGATATCGCTATGTGTTGAGTTTCTTTTTCTCCAACCAGATATTCTGTCATCAGCTTTTTTACTTTAAATCAAAGTTCAATTGCTTAAACTTCAATGAATATTTTATTCAGGTGTTTCTTTTTATTTCCAGATCCAATAACCATCAAGTTCTTGCTCCTAACTTTTTTGCTCAAATTTGAGACGATAAAAAAAATATCATGACGTCATTTAGACAATGTGAAGTGAACTTTGATGTAGATCAAAATAATTCTGAATTTTCCTTATGGAAGTCTACATGAAGTGTGATAAGAAGGCACAAAGAAACTTGATAAATCACATTTTTGATGAATTGCACAACGTTATGTGTCGATAATGAAAGAAAAGATTTTAATGAACAAAACTTCAAGTACAAATTTTCTTATTGTGATTCTCTGTTCAAGGTACTGTAACTTTTTTGKACCTATGTCAAATTATTTCAGAAAATTAGCAAGCAAATTTTTATTTTTAAATCTGAAGTACAGATCCTGAACCGAGTATTAAAAAATGTAATAAATAAATTGAGATATTATCGAGATCGCAATTTCAAAAAGAAATAAAAGGAGCATCTAAAGTTTCTCTTCTTCACGCTTTCCCTCTTCAACATCAGATCCCCATCCAACTTCAAGTTTCTTATCCAAAATTGGCGATTCTTTCAAATTATTGGTTTCAGTGGCTTCAATTTTTAAAGAACTTCTACCGGACCCGCCAATCACACTTTCGATAAGCATCTTTTCTAGTCTGAAATTAGCTTTTCAGTTTTTGGAAGTCAATTATCGGACTCACTTTAAGATTGGAACCTCAAACAAGCAACTCCAGAAGAAAGCCAGCACGTATGATAGGAGTGTGGCAGGTATGGCAACGTACAAAAACTGAAAAAAAAACTTATAGAATAATTTTCCAAAAATATTTACTCACCACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>499 281 220</canonical_bands>
                <polymorphic_bands>780 220</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>499 281 220</canonical_bands>
                <polymorphic_bands>780 220</polymorphic_bands>
            </assay>
            <assay>
                <site>GACNNNNGTC</site>
                <isoschizomers>
                    <enzyme>BoxI</enzyme>
                    <enzyme>BstPAI</enzyme>
                    <enzyme>PshAI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTCGATAATGAAAGAAAAGATT</pcr_primer_p1>
		<pcr_primer_p2>GAGAAACTTTAGATGCTCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TGTCGATAATGAAAGAAAAGATTTTAATGAACAAAACTTCAAGTACAAATTTTCTTATTGTGATTCTCTGTTCAAGGTACTGTAACTTTTTTGGACCTATGTCAAATTATTTCAGAAAATTAGCAAGCAAATTTTTATTTTTAAATCTGAAGTACAGATCCTGAACCGAGTATTAAAAAATGTAATAAATAAATTGAGATATTATCGAGATCGCAATTTCAAAAAGAAATAAAAGGAGCATCTAAAGTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>TGTCGATAATGAAAGAAAAGATTTTAATGAACAAAACTTCAAGTACAAATTTTCTTATTGTGATTCTCTGTTCAAGGTACTGTAACTTTTTTGKACCTATGTCAAATTATTTCAGAAAATTAGCAAGCAAATTTTTATTTTTAAATCTGAAGTACAGATCCTGAACCGAGTATTAAAAAATGTAATAAATAAATTGAGATATTATCGAGATCGCAATTTCAAAAAGAAATAAAAGGAGCATCTAAAGTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4523</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1058343</contig_pos>
        <strand>+</strand>
        <context>ATCCTGAACC[A/G]AGTATTAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTAGCAAGCAAATTTTTATTTTTAAATCTGAAGTACAGATCCTGAACC</left_flank>
        <right_flank>AGTATTAAAAAATGTAATAAATAAATTGAGATATTATCGAGATCGCAATT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTTGAGTTTCTTTTTCTCCAACCAGATATTCTGTCATCAGCTTTTTTACTTTAAATCAAAGTTCAATTGCTTAAACTTCAATGAATATTTTATTCAGGTGTTTCTTTTTATTTCCAGATCCAATAACCATCAAGTTCTTGCTCCTAACTTTTTTGCTCAAATTTGAGACGATAAAAAAAATATCATGACGTCATTTAGACAATGTGAAGTGAACTTTGATGTAGATCAAAATAATTCTGAATTTTCCTTATGGAAGTCTACATGAAGTGTGATAAGAAGGCACAAAGAAACTTGATAAATCACATTTTTGATGAATTGCACAACGTTATGTGTCGATAATGAAAGAAAAGATTTTAATGAACAAAACTTCAAGTACAAATTTTCTTATTGTGATTCTCTGTTCAAGGTACTGTAACTTTTTTGGACCTATGTCAAATTATTTCAGAAAATTAGCAAGCAAATTTTTATTTTTAAATCTGAAGTACAGATCCTGAACCGAGTATTAAAAAATGTAATAAATAAATTGAGATATTATCGAGATCGCAATTTCAAAAAGAAATAAAAGGAGCATCTAAAGTTTCTCTTCTTCACGCTTTCCCTCTTCAACATCAGATCCCCATCCAACTTCAAGTTTCTTATCCAAAATTGGCGATTCTTTCAAATTATTGGTTTCAGTGGCTTCAATTTTTAAAGAACTTCTACCGGACCCGCCAATCACACTTTCGATAAGCATCTTTTCTAGTCTGAAATTAGCTTTTCAGTTTTTGGAAGTCAATTATCGGACTCACTTTAAGATTGGAACCTCAAACAAGCAACTCCAGAAGAAAGCCAGCACGTATGATAGGAGTGTGGCAGGTATGGCAACGTACAAAAACTGAAAAAAAAACTTATAGAATAATTTTCCAAAAATATTTACTCACCACTTCCCAAGCCGATGAATAATGAAGAGTTCCTCCAACATTCAAGTAGTAGAACAAAACCATCCAATGCACAATATA</canonical>
            <polymorphic>GTGTTGAGTTTCTTTTTCTCCAACCAGATATTCTGTCATCAGCTTTTTTACTTTAAATCAAAGTTCAATTGCTTAAACTTCAATGAATATTTTATTCAGGTGTTTCTTTTTATTTCCAGATCCAATAACCATCAAGTTCTTGCTCCTAACTTTTTTGCTCAAATTTGAGACGATAAAAAAAATATCATGACGTCATTTAGACAATGTGAAGTGAACTTTGATGTAGATCAAAATAATTCTGAATTTTCCTTATGGAAGTCTACATGAAGTGTGATAAGAAGGCACAAAGAAACTTGATAAATCACATTTTTGATGAATTGCACAACGTTATGTGTCGATAATGAAAGAAAAGATTTTAATGAACAAAACTTCAAGTACAAATTTTCTTATTGTGATTCTCTGTTCAAGGTACTGTAACTTTTTTGGACCTATGTCAAATTATTTCAGAAAATTAGCAAGCAAATTTTTATTTTTAAATCTGAAGTACAGATCCTGAACCRAGTATTAAAAAATGTAATAAATAAATTGAGATATTATCGAGATCGCAATTTCAAAAAGAAATAAAAGGAGCATCTAAAGTTTCTCTTCTTCACGCTTTCCCTCTTCAACATCAGATCCCCATCCAACTTCAAGTTTCTTATCCAAAATTGGCGATTCTTTCAAATTATTGGTTTCAGTGGCTTCAATTTTTAAAGAACTTCTACCGGACCCGCCAATCACACTTTCGATAAGCATCTTTTCTAGTCTGAAATTAGCTTTTCAGTTTTTGGAAGTCAATTATCGGACTCACTTTAAGATTGGAACCTCAAACAAGCAACTCCAGAAGAAAGCCAGCACGTATGATAGGAGTGTGGCAGGTATGGCAACGTACAAAAACTGAAAAAAAAACTTATAGAATAATTTTCCAAAAATATTTACTCACCACTTCCCAAGCCGATGAATAATGAAGAGTTCCTCCAACATTCAAGTAGTAGAACAAAACCATCCAATGCACAATATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCGATAATGAAAGAAAAGATT</pcr_primer_p1>
		<pcr_primer_p2>GAGAAACTTTAGATGCTCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TGTCGATAATGAAAGAAAAGATTTTAATGAACAAAACTTCAAGTACAAATTTTCTTATTGTGATTCTCTGTTCAAGGTACTGTAACTTTTTTGGACCTATGTCAAATTATTTCAGAAAATTAGCAAGCAAATTTTTATTTTTAAATCTGAAGTACAGATCCTGAACCGAGTATTAAAAAATGTAATAAATAAATTGAGATATTATCGAGATCGCAATTTCAAAAAGAAATAAAAGGAGCATCTAAAGTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>TGTCGATAATGAAAGAAAAGATTTTAATGAACAAAACTTCAAGTACAAATTTTCTTATTGTGATTCTCTGTTCAAGGTACTGTAACTTTTTTGGACCTATGTCAAATTATTTCAGAAAATTAGCAAGCAAATTTTTATTTTTAAATCTGAAGTACAGATCCTGAACCRAGTATTAAAAAATGTAATAAATAAATTGAGATATTATCGAGATCGCAATTTCAAAAAGAAATAAAAGGAGCATCTAAAGTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4524</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1058690</contig_pos>
        <strand>+</strand>
        <context>CGTATGATAG[A/G]AGTGTGGCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGGAACCTCAAACAAGCAACTCCAGAAGAAAGCCAGCACGTATGATAG</left_flank>
        <right_flank>AGTGTGGCAGGTATGGCAACGTACAAAAACTGAAAAAAAAACTTATAGAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGATTTTAATGAACAAAACTTCAAGTACAAATTTTCTTATTGTGATTCTCTGTTCAAGGTACTGTAACTTTTTTGGACCTATGTCAAATTATTTCAGAAAATTAGCAAGCAAATTTTTATTTTTAAATCTGAAGTACAGATCCTGAACCGAGTATTAAAAAATGTAATAAATAAATTGAGATATTATCGAGATCGCAATTTCAAAAAGAAATAAAAGGAGCATCTAAAGTTTCTCTTCTTCACGCTTTCCCTCTTCAACATCAGATCCCCATCCAACTTCAAGTTTCTTATCCAAAATTGGCGATTCTTTCAAATTATTGGTTTCAGTGGCTTCAATTTTTAAAGAACTTCTACCGGACCCGCCAATCACACTTTCGATAAGCATCTTTTCTAGTCTGAAATTAGCTTTTCAGTTTTTGGAAGTCAATTATCGGACTCACTTTAAGATTGGAACCTCAAACAAGCAACTCCAGAAGAAAGCCAGCACGTATGATAGGAGTGTGGCAGGTATGGCAACGTACAAAAACTGAAAAAAAAACTTATAGAATAATTTTCCAAAAATATTTACTCACCACTTCCCAAGCCGATGAATAATGAAGAGTTCCTCCAACATTCAAGTAGTAGAACAAAACCATCCAATGCACAATATAAGCACAGTAGGACAGTCTTCCAAACGGTTGCCAGATTGGGTGGGACATAAAATTGTTGATAGGTCCACCCCATCCCATATGATTAGCAGCCACCACCCAACAAATAAAAACTCCCCATCCCACACGATGGAAATTGTAAAATGTTGCTCTTGTGAATGTGCTCCAGTGAGCACCTTTGTCGTAATCGTAAGTCGCAAATAGACAAAAGCCTGCGATGATGAATGCTGTGATCCAACCAGCTACAGCCAAAACCCAGTTTAATCTGATCTTCCGGTTACCATAAGTGGCTAGTAGGTATCCTGTGAGCAATCCAATAAGATATGGGGGACATCTGATCCATGGTTTAG</canonical>
            <polymorphic>AAAAGATTTTAATGAACAAAACTTCAAGTACAAATTTTCTTATTGTGATTCTCTGTTCAAGGTACTGTAACTTTTTTGGACCTATGTCAAATTATTTCAGAAAATTAGCAAGCAAATTTTTATTTTTAAATCTGAAGTACAGATCCTGAACCGAGTATTAAAAAATGTAATAAATAAATTGAGATATTATCGAGATCGCAATTTCAAAAAGAAATAAAAGGAGCATCTAAAGTTTCTCTTCTTCACGCTTTCCCTCTTCAACATCAGATCCCCATCCAACTTCAAGTTTCTTATCCAAAATTGGCGATTCTTTCAAATTATTGGTTTCAGTGGCTTCAATTTTTAAAGAACTTCTACCGGACCCGCCAATCACACTTTCGATAAGCATCTTTTCTAGTCTGAAATTAGCTTTTCAGTTTTTGGAAGTCAATTATCGGACTCACTTTAAGATTGGAACCTCAAACAAGCAACTCCAGAAGAAAGCCAGCACGTATGATAGRAGTGTGGCAGGTATGGCAACGTACAAAAACTGAAAAAAAAACTTATAGAATAATTTTCCAAAAATATTTACTCACCACTTCCCAAGCCGATGAATAATGAAGAGTTCCTCCAACATTCAAGTAGTAGAACAAAACCATCCAATGCACAATATAAGCACAGTAGGACAGTCTTCCAAACGGTTGCCAGATTGGGTGGGACATAAAATTGTTGATAGGTCCACCCCATCCCATATGATTAGCAGCCACCACCCAACAAATAAAAACTCCCCATCCCACACGATGGAAATTGTAAAATGTTGCTCTTGTGAATGTGCTCCAGTGAGCACCTTTGTCGTAATCGTAAGTCGCAAATAGACAAAAGCCTGCGATGATGAATGCTGTGATCCAACCAGCTACAGCCAAAACCCAGTTTAATCTGATCTTCCGGTTACCATAAGTGGCTAGTAGGTATCCTGTGAGCAATCCAATAAGATATGGGGGACATCTGATCCATGGTTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATAAGCATCTTTTCTAGTCTG</pcr_primer_p1>
		<pcr_primer_p2>TCTACTACTTGAATGTTGGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGATAAGCATCTTTTCTAGTCTGAAATTAGCTTTTCAGTTTTTGGAAGTCAATTATCGGACTCACTTTAAGATTGGAACCTCAAACAAGCAACTCCAGAAGAAAGCCAGCACGTATGATAGGAGTGTGGCAGGTATGGCAACGTACAAAAACTGAAAAAAAAACTTATAGAATAATTTTCCAAAAATATTTACTCACCACTTCCCAAGCCGATGAATAATGAAGAGTTCCTCCAACATTCAAGTAGTAGA</canonical_amplicon>
		<polymorphic_amplicon>CGATAAGCATCTTTTCTAGTCTGAAATTAGCTTTTCAGTTTTTGGAAGTCAATTATCGGACTCACTTTAAGATTGGAACCTCAAACAAGCAACTCCAGAAGAAAGCCAGCACGTATGATAGRAGTGTGGCAGGTATGGCAACGTACAAAAACTGAAAAAAAAACTTATAGAATAATTTTCCAAAAATATTTACTCACCACTTCCCAAGCCGATGAATAATGAAGAGTTCCTCCAACATTCAAGTAGTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4525</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1062470</contig_pos>
        <strand></strand>
        <context>GACCGATCTG[A/G]GTACTGTAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATGTTTAAAAAAACAAGTGAAACTTCTGTTTCTTTGAAGACCGATCTG</left_flank>
        <right_flank>GTACTGTAAAGTAGCAAATGTCAAAAGTTGAAAAAGATTCGACAGTAGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTCTGATATGCTGTTTCTCTCACAATTTCAATTGTTAAGTAAGTTATCACCCGGAACCGGCCCAAAATTTAAGTAATTTTTTGAAAAGATTCCTTAATTTTTTTCAACAGAAGTTAGAAGTACACCATGGTTTTTAAGGTTCTTAATTGATTGAAAAATTCGTGTACTTCTGATCCATTGACAACTGGCTAGTAAGCTTCTTTTCAACTCCACCTTTTCTCTTTTTTTCAATTGTTTTTTCTTAGATTTTCCCAATGACGAATCTGTTTGCAGAACGGTTTCATAGACTGCGGTCCAAATACAGCCATCGGTCAGTTTGGAACGAGGATCACTTCGTATTGTTGCTCATTATTTGACTTCCCTATCACGACAGGAGAAAAAGTGTGTTGTAGAAGCACAATACGGGAAGAAGGAGAGTAAACTGTTTGGAGTTGCTAAGAAAACAATGACATGTTTAAAAAAACAAGTGAAACTTCTGTTTCTTTGAAGACCGATCTGAGTACTGTAAAGTAGCAAATGTCAAAAGTTGAAAAAGATTCGACAGTAGATCATTCAAAACATTCCAAGCATAACTTTGAACTTTTCGAGATTTGTCAAATTTGAATAGAAATATAAAATCTAGACACGGCCCTGGTATCTGTTTAATGTAACACTTCATTCTTATCAATCCTCATTCAAAATGATCTTTTTGAATCGTTTGGTCCACATGGTCTCCACATGGTTTGTTTCTCCGAAAAATCAGAATTTGCAAAACCCTCGTGATTTGAGAATACTAGTTCTTTGGATTATTCAAGATCTTCCCAAAATCATGCCATAAAATCAGTTCACATCGATCACTGTTTGACCAAAGTATATAACAGGTGCGGAGGTGTGAGTATGAAATTGGTACGTATTACATTGATAAAATAACAAGTTTCTCTCGACATTTTTTTTCAGAAGAGAAGAACGTACAAGTAATAAATTATCAAAAGTAATTGGCCACCGACGAGGTGATACAGA</canonical>
            <polymorphic>GGTCTGATATGCTGTTTCTCTCACAATTTCAATTGTTAAGTAAGTTATCACCCGGAACCGGCCCAAAATTTAAGTAATTTTTTGAAAAGATTCCTTAATTTTTTTCAACAGAAGTTAGAAGTACACCATGGTTTTTAAGGTTCTTAATTGATTGAAAAATTCGTGTACTTCTGATCCATTGACAACTGGCTAGTAAGCTTCTTTTCAACTCCACCTTTTCTCTTTTTTTCAATTGTTTTTTCTTAGATTTTCCCAATGACGAATCTGTTTGCAGAACGGTTTCATAGACTGCGGTCCAAATACAGCCATCGGTCAGTTTGGAACGAGGATCACTTCGTATTGTTGCTCATTATTTGACTTCCCTATCACGACAGGAGAAAAAGTGTGTTGTAGAAGCACAATACGGGAAGAAGGAGAGTAAACTGTTTGGAGTTGCTAAGAAAACAATGACATGTTTAAAAAAACAAGTGAAACTTCTGTTTCTTTGAAGACCGATCTGRGTACTGTAAAGTAGCAAATGTCAAAAGTTGAAAAAGATTCGACAGTAGATCATTCAAAACATTCCAAGCATAACTTTGAACTTTTCGAGATTTGTCAAATTTGAATAGAAATATAAAATCTAGACACGGCCCTGGTATCTGTTTAATGTAACACTTCATTCTTATCAATCCTCATTCAAAATGATCTTTTTGAATCGTTTGGTCCACATGGTCTCCACATGGTTTGTTTCTCCGAAAAATCAGAATTTGCAAAACCCTCGTGATTTGAGAATACTAGTTCTTTGGATTATTCAAGATCTTCCCAAAATCATGCCATAAAATCAGTTCACATCGATCACTGTTTGACCAAAGTATATAACAGGTGCGGAGGTGTGAGTATGAAATTGGTACGTATTACATTGATAAAATAACAAGTTTCTCTCGACATTTTTTTTCAGAAGAGAAGAACGTACAAGTAATAAATTATCAAAAGTAATTGGCCACCGACGAGGTGATACAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGTACT</site>
                <isoschizomers>
                    <enzyme>Acc113I</enzyme>
                    <enzyme>ScaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 242 194 61</canonical_bands>
                <polymorphic_bands>564 242 194</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>326 235 194 167 64 9 5</canonical_bands>
                <polymorphic_bands>561 194 167 64 9 5</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 336 120 44</canonical_bands>
                <polymorphic_bands>836 120 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCATTATTTGACTTCCCTATCA</pcr_primer_p1>
		<pcr_primer_p2>ACAAATCTCGAAAAGTTCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCATTATTTGACTTCCCTATCACGACAGGAGAAAAAGTGTGTTGTAGAAGCACAATACGGGAAGAAGGAGAGTAAACTGTTTGGAGTTGCTAAGAAAACAATGACATGTTTAAAAAAACAAGTGAAACTTCTGTTTCTTTGAAGACCGATCTGAGTACTGTAAAGTAGCAAATGTCAAAAGTTGAAAAAGATTCGACAGTAGATCATTCAAAACATTCCAAGCATAACTTTGAACTTTTCGAGATTTGT</canonical_amplicon>
		<polymorphic_amplicon>CTCATTATTTGACTTCCCTATCACGACAGGAGAAAAAGTGTGTTGTAGAAGCACAATACGGGAAGAAGGAGAGTAAACTGTTTGGAGTTGCTAAGAAAACAATGACATGTTTAAAAAAACAAGTGAAACTTCTGTTTCTTTGAAGACCGATCTGRGTACTGTAAAGTAGCAAATGTCAAAAGTTGAAAAAGATTCGACAGTAGATCATTCAAAACATTCCAAGCATAACTTTGAACTTTTCGAGATTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4526</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1062385</contig_pos>
        <strand>+</strand>
        <context>GGGAAGAAGG[A/T]GAGTAAACTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCACGACAGGAGAAAAAGTGTGTTGTAGAAGCACAATACGGGAAGAAGG</left_flank>
        <right_flank>GAGTAAACTGTTTGGAGTTGCTAAGAAAACAATGACATGTTTAAAAAAAC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGATTGCCTTATTTGAATTTCGTCCCGCACCCGTTAAATGCTGGTCGATTCTTGTTGGATTTTATAGATCTCACGAAGCTCTATGGTCTGATATGCTGTTTCTCTCACAATTTCAATTGTTAAGTAAGTTATCACCCGGAACCGGCCCAAAATTTAAGTAATTTTTTGAAAAGATTCCTTAATTTTTTTCAACAGAAGTTAGAAGTACACCATGGTTTTTAAGGTTCTTAATTGATTGAAAAATTCGTGTACTTCTGATCCATTGACAACTGGCTAGTAAGCTTCTTTTCAACTCCACCTTTTCTCTTTTTTTCAATTGTTTTTTCTTAGATTTTCCCAATGACGAATCTGTTTGCAGAACGGTTTCATAGACTGCGGTCCAAATACAGCCATCGGTCAGTTTGGAACGAGGATCACTTCGTATTGTTGCTCATTATTTGACTTCCCTATCACGACAGGAGAAAAAGTGTGTTGTAGAAGCACAATACGGGAAGAAGGAGAGTAAACTGTTTGGAGTTGCTAAGAAAACAATGACATGTTTAAAAAAACAAGTGAAACTTCTGTTTCTTTGAAGACCGATCTGAGTACTGTAAAGTAGCAAATGTCAAAAGTTGAAAAAGATTCGACAGTAGATCATTCAAAACATTCCAAGCATAACTTTGAACTTTTCGAGATTTGTCAAATTTGAATAGAAATATAAAATCTAGACACGGCCCTGGTATCTGTTTAATGTAACACTTCATTCTTATCAATCCTCATTCAAAATGATCTTTTTGAATCGTTTGGTCCACATGGTCTCCACATGGTTTGTTTCTCCGAAAAATCAGAATTTGCAAAACCCTCGTGATTTGAGAATACTAGTTCTTTGGATTATTCAAGATCTTCCCAAAATCATGCCATAAAATCAGTTCACATCGATCACTGTTTGACCAAAGTATATAACAGGTGCGGAGGTGTGAGTATGAAATTGGTACGTATTACATTGATAAAATAACAAGT</canonical>
            <polymorphic>TCGATTGCCTTATTTGAATTTCGTCCCGCACCCGTTAAATGCTGGTCGATTCTTGTTGGATTTTATAGATCTCACGAAGCTCTATGGTCTGATATGCTGTTTCTCTCACAATTTCAATTGTTAAGTAAGTTATCACCCGGAACCGGCCCAAAATTTAAGTAATTTTTTGAAAAGATTCCTTAATTTTTTTCAACAGAAGTTAGAAGTACACCATGGTTTTTAAGGTTCTTAATTGATTGAAAAATTCGTGTACTTCTGATCCATTGACAACTGGCTAGTAAGCTTCTTTTCAACTCCACCTTTTCTCTTTTTTTCAATTGTTTTTTCTTAGATTTTCCCAATGACGAATCTGTTTGCAGAACGGTTTCATAGACTGCGGTCCAAATACAGCCATCGGTCAGTTTGGAACGAGGATCACTTCGTATTGTTGCTCATTATTTGACTTCCCTATCACGACAGGAGAAAAAGTGTGTTGTAGAAGCACAATACGGGAAGAAGGWGAGTAAACTGTTTGGAGTTGCTAAGAAAACAATGACATGTTTAAAAAAACAAGTGAAACTTCTGTTTCTTTGAAGACCGATCTGAGTACTGTAAAGTAGCAAATGTCAAAAGTTGAAAAAGATTCGACAGTAGATCATTCAAAACATTCCAAGCATAACTTTGAACTTTTCGAGATTTGTCAAATTTGAATAGAAATATAAAATCTAGACACGGCCCTGGTATCTGTTTAATGTAACACTTCATTCTTATCAATCCTCATTCAAAATGATCTTTTTGAATCGTTTGGTCCACATGGTCTCCACATGGTTTGTTTCTCCGAAAAATCAGAATTTGCAAAACCCTCGTGATTTGAGAATACTAGTTCTTTGGATTATTCAAGATCTTCCCAAAATCATGCCATAAAATCAGTTCACATCGATCACTGTTTGACCAAAGTATATAACAGGTGCGGAGGTGTGAGTATGAAATTGGTACGTATTACATTGATAAAATAACAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCATTATTTGACTTCCCTATCA</pcr_primer_p1>
		<pcr_primer_p2>ACAAATCTCGAAAAGTTCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCATTATTTGACTTCCCTATCACGACAGGAGAAAAAGTGTGTTGTAGAAGCACAATACGGGAAGAAGGAGAGTAAACTGTTTGGAGTTGCTAAGAAAACAATGACATGTTTAAAAAAACAAGTGAAACTTCTGTTTCTTTGAAGACCGATCTGAGTACTGTAAAGTAGCAAATGTCAAAAGTTGAAAAAGATTCGACAGTAGATCATTCAAAACATTCCAAGCATAACTTTGAACTTTTCGAGATTTGT</canonical_amplicon>
		<polymorphic_amplicon>CTCATTATTTGACTTCCCTATCACGACAGGAGAAAAAGTGTGTTGTAGAAGCACAATACGGGAAGAAGGWGAGTAAACTGTTTGGAGTTGCTAAGAAAACAATGACATGTTTAAAAAAACAAGTGAAACTTCTGTTTCTTTGAAGACCGATCTGAGTACTGTAAAGTAGCAAATGTCAAAAGTTGAAAAAGATTCGACAGTAGATCATTCAAAACATTCCAAGCATAACTTTGAACTTTTCGAGATTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4527</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1062251</contig_pos>
        <strand>+</strand>
        <context>GCAGAACGGT[G/T]TCATAGACTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTGTTTTTTCTTAGATTTTCCCAATGACGAATCTGTTTGCAGAACGGT</left_flank>
        <right_flank>TCATAGACTGCGGTCCAAATACAGCCATCGGTCAGTTTGGAACGAGGATC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTACCCTCGAATCGTTGTACCCCCAGAATTTTTTGCACAAAATAGCATACCAGATGATGAAGCTCGAAGAGGTCTACAATCTCCAATAAGCTTATAAAGTGGTATTATGATCCAGGCCGGCATTTTTGGCCGTGTCGATTGCCTTATTTGAATTTCGTCCCGCACCCGTTAAATGCTGGTCGATTCTTGTTGGATTTTATAGATCTCACGAAGCTCTATGGTCTGATATGCTGTTTCTCTCACAATTTCAATTGTTAAGTAAGTTATCACCCGGAACCGGCCCAAAATTTAAGTAATTTTTTGAAAAGATTCCTTAATTTTTTTCAACAGAAGTTAGAAGTACACCATGGTTTTTAAGGTTCTTAATTGATTGAAAAATTCGTGTACTTCTGATCCATTGACAACTGGCTAGTAAGCTTCTTTTCAACTCCACCTTTTCTCTTTTTTTCAATTGTTTTTTCTTAGATTTTCCCAATGACGAATCTGTTTGCAGAACGGTTTCATAGACTGCGGTCCAAATACAGCCATCGGTCAGTTTGGAACGAGGATCACTTCGTATTGTTGCTCATTATTTGACTTCCCTATCACGACAGGAGAAAAAGTGTGTTGTAGAAGCACAATACGGGAAGAAGGAGAGTAAACTGTTTGGAGTTGCTAAGAAAACAATGACATGTTTAAAAAAACAAGTGAAACTTCTGTTTCTTTGAAGACCGATCTGAGTACTGTAAAGTAGCAAATGTCAAAAGTTGAAAAAGATTCGACAGTAGATCATTCAAAACATTCCAAGCATAACTTTGAACTTTTCGAGATTTGTCAAATTTGAATAGAAATATAAAATCTAGACACGGCCCTGGTATCTGTTTAATGTAACACTTCATTCTTATCAATCCTCATTCAAAATGATCTTTTTGAATCGTTTGGTCCACATGGTCTCCACATGGTTTGTTTCTCCGAAAAATCAGAATTTGCAAAACCCTCGTGATTTGAGAATACTAGTTCT</canonical>
            <polymorphic>GTACCCTCGAATCGTTGTACCCCCAGAATTTTTTGCACAAAATAGCATACCAGATGATGAAGCTCGAAGAGGTCTACAATCTCCAATAAGCTTATAAAGTGGTATTATGATCCAGGCCGGCATTTTTGGCCGTGTCGATTGCCTTATTTGAATTTCGTCCCGCACCCGTTAAATGCTGGTCGATTCTTGTTGGATTTTATAGATCTCACGAAGCTCTATGGTCTGATATGCTGTTTCTCTCACAATTTCAATTGTTAAGTAAGTTATCACCCGGAACCGGCCCAAAATTTAAGTAATTTTTTGAAAAGATTCCTTAATTTTTTTCAACAGAAGTTAGAAGTACACCATGGTTTTTAAGGTTCTTAATTGATTGAAAAATTCGTGTACTTCTGATCCATTGACAACTGGCTAGTAAGCTTCTTTTCAACTCCACCTTTTCTCTTTTTTTCAATTGTTTTTTCTTAGATTTTCCCAATGACGAATCTGTTTGCAGAACGGTKTCATAGACTGCGGTCCAAATACAGCCATCGGTCAGTTTGGAACGAGGATCACTTCGTATTGTTGCTCATTATTTGACTTCCCTATCACGACAGGAGAAAAAGTGTGTTGTAGAAGCACAATACGGGAAGAAGGAGAGTAAACTGTTTGGAGTTGCTAAGAAAACAATGACATGTTTAAAAAAACAAGTGAAACTTCTGTTTCTTTGAAGACCGATCTGAGTACTGTAAAGTAGCAAATGTCAAAAGTTGAAAAAGATTCGACAGTAGATCATTCAAAACATTCCAAGCATAACTTTGAACTTTTCGAGATTTGTCAAATTTGAATAGAAATATAAAATCTAGACACGGCCCTGGTATCTGTTTAATGTAACACTTCATTCTTATCAATCCTCATTCAAAATGATCTTTTTGAATCGTTTGGTCCACATGGTCTCCACATGGTTTGTTTCTCCGAAAAATCAGAATTTGCAAAACCCTCGTGATTTGAGAATACTAGTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>503 307 190</canonical_bands>
                <polymorphic_bands>693 307</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCTAGTAAGCTTCTTTTCAACT</pcr_primer_p1>
		<pcr_primer_p2>TAGCAACTCCAAACAGTTTACTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGCTAGTAAGCTTCTTTTCAACTCCACCTTTTCTCTTTTTTTCAATTGTTTTTTCTTAGATTTTCCCAATGACGAATCTGTTTGCAGAACGGTTTCATAGACTGCGGTCCAAATACAGCCATCGGTCAGTTTGGAACGAGGATCACTTCGTATTGTTGCTCATTATTTGACTTCCCTATCACGACAGGAGAAAAAGTGTGTTGTAGAAGCACAATACGGGAAGAAGGAGAGTAAACTGTTTGGAGTTGCTA</canonical_amplicon>
		<polymorphic_amplicon>GGCTAGTAAGCTTCTTTTCAACTCCACCTTTTCTCTTTTTTTCAATTGTTTTTTCTTAGATTTTCCCAATGACGAATCTGTTTGCAGAACGGTKTCATAGACTGCGGTCCAAATACAGCCATCGGTCAGTTTGGAACGAGGATCACTTCGTATTGTTGCTCATTATTTGACTTCCCTATCACGACAGGAGAAAAAGTGTGTTGTAGAAGCACAATACGGGAAGAAGGAGAGTAAACTGTTTGGAGTTGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4528</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1062184</contig_pos>
        <strand></strand>
        <context>TTCAACTCCA[C/T]CTTTTCTCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTACTTCTGATCCATTGACAACTGGCTAGTAAGCTTCTTTTCAACTCCA</left_flank>
        <right_flank>CTTTTCTCTTTTTTTCAATTGTTTTTTCTTAGATTTTCCCAATGACGAAT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTTGCTAAAAGATTTTGTACCCCCGAATCATGGATTTTGTACCCCTAAATCAGTTGTACCCCCTTGTACCCTCGAATCGTTGTACCCCCAGAATTTTTTGCACAAAATAGCATACCAGATGATGAAGCTCGAAGAGGTCTACAATCTCCAATAAGCTTATAAAGTGGTATTATGATCCAGGCCGGCATTTTTGGCCGTGTCGATTGCCTTATTTGAATTTCGTCCCGCACCCGTTAAATGCTGGTCGATTCTTGTTGGATTTTATAGATCTCACGAAGCTCTATGGTCTGATATGCTGTTTCTCTCACAATTTCAATTGTTAAGTAAGTTATCACCCGGAACCGGCCCAAAATTTAAGTAATTTTTTGAAAAGATTCCTTAATTTTTTTCAACAGAAGTTAGAAGTACACCATGGTTTTTAAGGTTCTTAATTGATTGAAAAATTCGTGTACTTCTGATCCATTGACAACTGGCTAGTAAGCTTCTTTTCAACTCCACCTTTTCTCTTTTTTTCAATTGTTTTTTCTTAGATTTTCCCAATGACGAATCTGTTTGCAGAACGGTTTCATAGACTGCGGTCCAAATACAGCCATCGGTCAGTTTGGAACGAGGATCACTTCGTATTGTTGCTCATTATTTGACTTCCCTATCACGACAGGAGAAAAAGTGTGTTGTAGAAGCACAATACGGGAAGAAGGAGAGTAAACTGTTTGGAGTTGCTAAGAAAACAATGACATGTTTAAAAAAACAAGTGAAACTTCTGTTTCTTTGAAGACCGATCTGAGTACTGTAAAGTAGCAAATGTCAAAAGTTGAAAAAGATTCGACAGTAGATCATTCAAAACATTCCAAGCATAACTTTGAACTTTTCGAGATTTGTCAAATTTGAATAGAAATATAAAATCTAGACACGGCCCTGGTATCTGTTTAATGTAACACTTCATTCTTATCAATCCTCATTCAAAATGATCTTTTTGAATCGTTTGGTCCACATGGTCT</canonical>
            <polymorphic>AACTTGCTAAAAGATTTTGTACCCCCGAATCATGGATTTTGTACCCCTAAATCAGTTGTACCCCCTTGTACCCTCGAATCGTTGTACCCCCAGAATTTTTTGCACAAAATAGCATACCAGATGATGAAGCTCGAAGAGGTCTACAATCTCCAATAAGCTTATAAAGTGGTATTATGATCCAGGCCGGCATTTTTGGCCGTGTCGATTGCCTTATTTGAATTTCGTCCCGCACCCGTTAAATGCTGGTCGATTCTTGTTGGATTTTATAGATCTCACGAAGCTCTATGGTCTGATATGCTGTTTCTCTCACAATTTCAATTGTTAAGTAAGTTATCACCCGGAACCGGCCCAAAATTTAAGTAATTTTTTGAAAAGATTCCTTAATTTTTTTCAACAGAAGTTAGAAGTACACCATGGTTTTTAAGGTTCTTAATTGATTGAAAAATTCGTGTACTTCTGATCCATTGACAACTGGCTAGTAAGCTTCTTTTCAACTCCAYCTTTTCTCTTTTTTTCAATTGTTTTTTCTTAGATTTTCCCAATGACGAATCTGTTTGCAGAACGGTTTCATAGACTGCGGTCCAAATACAGCCATCGGTCAGTTTGGAACGAGGATCACTTCGTATTGTTGCTCATTATTTGACTTCCCTATCACGACAGGAGAAAAAGTGTGTTGTAGAAGCACAATACGGGAAGAAGGAGAGTAAACTGTTTGGAGTTGCTAAGAAAACAATGACATGTTTAAAAAAACAAGTGAAACTTCTGTTTCTTTGAAGACCGATCTGAGTACTGTAAAGTAGCAAATGTCAAAAGTTGAAAAAGATTCGACAGTAGATCATTCAAAACATTCCAAGCATAACTTTGAACTTTTCGAGATTTGTCAAATTTGAATAGAAATATAAAATCTAGACACGGCCCTGGTATCTGTTTAATGTAACACTTCATTCTTATCAATCCTCATTCAAAATGATCTTTTTGAATCGTTTGGTCCACATGGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>156 119 104 75 72 64 53 48 44 40 36 34 33 30 27 27 17 11 8 2</canonical_bands>
                <polymorphic_bands>167 156 104 75 72 64 53 44 40 36 34 33 30 27 27 17 11 8 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAGTACACCATGGTTTTTAAG</pcr_primer_p1>
		<pcr_primer_p2>GAAGTCAAATAATGAGCAACAAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGAAGTACACCATGGTTTTTAAGGTTCTTAATTGATTGAAAAATTCGTGTACTTCTGATCCATTGACAACTGGCTAGTAAGCTTCTTTTCAACTCCACCTTTTCTCTTTTTTTCAATTGTTTTTTCTTAGATTTTCCCAATGACGAATCTGTTTGCAGAACGGTTTCATAGACTGCGGTCCAAATACAGCCATCGGTCAGTTTGGAACGAGGATCACTTCGTATTGTTGCTCATTATTTGACTTC</canonical_amplicon>
		<polymorphic_amplicon>AGAAGTACACCATGGTTTTTAAGGTTCTTAATTGATTGAAAAATTCGTGTACTTCTGATCCATTGACAACTGGCTAGTAAGCTTCTTTTCAACTCCAYCTTTTCTCTTTTTTTCAATTGTTTTTTCTTAGATTTTCCCAATGACGAATCTGTTTGCAGAACGGTTTCATAGACTGCGGTCCAAATACAGCCATCGGTCAGTTTGGAACGAGGATCACTTCGTATTGTTGCTCATTATTTGACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4529</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>9239</contig_pos>
        <strand>+</strand>
        <context>GGGAATACTG[A/G]AACTTTCATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACCTCGAACATAGGTGTAGAGGCGACTTTTCGCCAGGTAGGGAATACTG</left_flank>
        <right_flank>AACTTTCATATGGGGTTACTGTACCTCAAACAAAATCTTACTAGGCAGCC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGGCTTGTAGAAAAGCTAGAAAATTGGTTTTTGAACCAAAAGCAAGCTGCAGAAATGAAGAATTTTAGTTTCACAAAAATCGAAAAAATCAAGTTTCTAGCTTGCATAAAAGCCAAGATACAACCTCTCAAACTTCAGAAAACACGCAGACAACCTCGCCTGTCGTCTGCGTCTGTTGTCTGTGTCTCTTCAAAACTTCAAATTTTTATTTCTCGGCTTCTAGGACAGCAAAAAACTTGGTTTTGGAACCAATATAAAGCTGAAAAACTGAGAATTTTGACGACTAGAAAAATACTCACCACAACAACAACGCGTACATCACCGCCGCCATTGTTGTGCACGCCGTTCCAGAAATTTCTTGATTTGAGAACACAGTGAAAAAGATGTAGAATAAAAGTAGATCGAAATGATAAGCCAGTGCTAGAAAATCCCGTCGCGCCAGATTATGACCTCGAACATAGGTGTAGAGGCGACTTTTCGCCAGGTAGGGAATACTGAAACTTTCATATGGGGTTACTGTACCTCAAACAAAATCTTACTAGGCAGCCAGACTAAAGAATGTGAGAAAGACCAGTGAGAAAATCGATAATCCGTTTACAACATATCCCAATGTGATAAGAGCATTGTCACAGACATTCGGGTCGTTCAGAGCGGCATCCTGGAATTTTTTAATTTTTCGAACAATAGAACTTTTTGCACCGAGCATACTGATAATCAGTTGGAACTGATCGCTATAATTTTGGAATTATAGCAAAAAATTGAGCCAGGCTACTTACCACAATAATAGCGAAATCCGTCAAATGTGTACACCTTGCCTCGAGAATCCCATCCGAATCAGTCATAATTTCACATTCTCGATTATCGGCCCACTGTCTGCGTCCAACATCCCACCAAGTGACTTTTAAACTTCCATGAAGGGGTCGCAAAAGTGTCGAAACATTGAAACGGAGTAGTGCCATTGGAGCATCAGATGTGGAGGAGATGGACACAGCTACACC</canonical>
            <polymorphic>CTCGGCTTGTAGAAAAGCTAGAAAATTGGTTTTTGAACCAAAAGCAAGCTGCAGAAATGAAGAATTTTAGTTTCACAAAAATCGAAAAAATCAAGTTTCTAGCTTGCATAAAAGCCAAGATACAACCTCTCAAACTTCAGAAAACACGCAGACAACCTCGCCTGTCGTCTGCGTCTGTTGTCTGTGTCTCTTCAAAACTTCAAATTTTTATTTCTCGGCTTCTAGGACAGCAAAAAACTTGGTTTTGGAACCAATATAAAGCTGAAAAACTGAGAATTTTGACGACTAGAAAAATACTCACCACAACAACAACGCGTACATCACCGCCGCCATTGTTGTGCACGCCGTTCCAGAAATTTCTTGATTTGAGAACACAGTGAAAAAGATGTAGAATAAAAGTAGATCGAAATGATAAGCCAGTGCTAGAAAATCCCGTCGCGCCAGATTATGACCTCGAACATAGGTGTAGAGGCGACTTTTCGCCAGGTAGGGAATACTGRAACTTTCATATGGGGTTACTGTACCTCAAACAAAATCTTACTAGGCAGCCAGACTAAAGAATGTGAGAAAGACCAGTGAGAAAATCGATAATCCGTTTACAACATATCCCAATGTGATAAGAGCATTGTCACAGACATTCGGGTCGTTCAGAGCGGCATCCTGGAATTTTTTAATTTTTCGAACAATAGAACTTTTTGCACCGAGCATACTGATAATCAGTTGGAACTGATCGCTATAATTTTGGAATTATAGCAAAAAATTGAGCCAGGCTACTTACCACAATAATAGCGAAATCCGTCAAATGTGTACACCTTGCCTCGAGAATCCCATCCGAATCAGTCATAATTTCACATTCTCGATTATCGGCCCACTGTCTGCGTCCAACATCCCACCAAGTGACTTTTAAACTTCCATGAAGGGGTCGCAAAAGTGTCGAAACATTGAAACGGAGTAGTGCCATTGGAGCATCAGATGTGGAGGAGATGGACACAGCTACACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTGAGAACACAGTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>GATATGTTGTAAACGGATTATCG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GATTTGAGAACACAGTGAAAAAGATGTAGAATAAAAGTAGATCGAAATGATAAGCCAGTGCTAGAAAATCCCGTCGCGCCAGATTATGACCTCGAACATAGGTGTAGAGGCGACTTTTCGCCAGGTAGGGAATACTGAAACTTTCATATGGGGTTACTGTACCTCAAACAAAATCTTACTAGGCAGCCAGACTAAAGAATGTGAGAAAGACCAGTGAGAAAATCGATAATCCGTTTACAACATATC</canonical_amplicon>
		<polymorphic_amplicon>GATTTGAGAACACAGTGAAAAAGATGTAGAATAAAAGTAGATCGAAATGATAAGCCAGTGCTAGAAAATCCCGTCGCGCCAGATTATGACCTCGAACATAGGTGTAGAGGCGACTTTTCGCCAGGTAGGGAATACTGRAACTTTCATATGGGGTTACTGTACCTCAAACAAAATCTTACTAGGCAGCCAGACTAAAGAATGTGAGAAAGACCAGTGAGAAAATCGATAATCCGTTTACAACATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4530</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>9254</contig_pos>
        <strand>+</strand>
        <context>TTCATATGGG[A/G]TTACTGTACC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTAGAGGCGACTTTTCGCCAGGTAGGGAATACTGAAACTTTCATATGGG</left_flank>
        <right_flank>TTACTGTACCTCAAACAAAATCTTACTAGGCAGCCAGACTAAAGAATGTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTAGAAAATTGGTTTTTGAACCAAAAGCAAGCTGCAGAAATGAAGAATTTTAGTTTCACAAAAATCGAAAAAATCAAGTTTCTAGCTTGCATAAAAGCCAAGATACAACCTCTCAAACTTCAGAAAACACGCAGACAACCTCGCCTGTCGTCTGCGTCTGTTGTCTGTGTCTCTTCAAAACTTCAAATTTTTATTTCTCGGCTTCTAGGACAGCAAAAAACTTGGTTTTGGAACCAATATAAAGCTGAAAAACTGAGAATTTTGACGACTAGAAAAATACTCACCACAACAACAACGCGTACATCACCGCCGCCATTGTTGTGCACGCCGTTCCAGAAATTTCTTGATTTGAGAACACAGTGAAAAAGATGTAGAATAAAAGTAGATCGAAATGATAAGCCAGTGCTAGAAAATCCCGTCGCGCCAGATTATGACCTCGAACATAGGTGTAGAGGCGACTTTTCGCCAGGTAGGGAATACTGAAACTTTCATATGGGGTTACTGTACCTCAAACAAAATCTTACTAGGCAGCCAGACTAAAGAATGTGAGAAAGACCAGTGAGAAAATCGATAATCCGTTTACAACATATCCCAATGTGATAAGAGCATTGTCACAGACATTCGGGTCGTTCAGAGCGGCATCCTGGAATTTTTTAATTTTTCGAACAATAGAACTTTTTGCACCGAGCATACTGATAATCAGTTGGAACTGATCGCTATAATTTTGGAATTATAGCAAAAAATTGAGCCAGGCTACTTACCACAATAATAGCGAAATCCGTCAAATGTGTACACCTTGCCTCGAGAATCCCATCCGAATCAGTCATAATTTCACATTCTCGATTATCGGCCCACTGTCTGCGTCCAACATCCCACCAAGTGACTTTTAAACTTCCATGAAGGGGTCGCAAAAGTGTCGAAACATTGAAACGGAGTAGTGCCATTGGAGCATCAGATGTGGAGGAGATGGACACAGCTACACCGTTATTGAGTACGGT</canonical>
            <polymorphic>AGCTAGAAAATTGGTTTTTGAACCAAAAGCAAGCTGCAGAAATGAAGAATTTTAGTTTCACAAAAATCGAAAAAATCAAGTTTCTAGCTTGCATAAAAGCCAAGATACAACCTCTCAAACTTCAGAAAACACGCAGACAACCTCGCCTGTCGTCTGCGTCTGTTGTCTGTGTCTCTTCAAAACTTCAAATTTTTATTTCTCGGCTTCTAGGACAGCAAAAAACTTGGTTTTGGAACCAATATAAAGCTGAAAAACTGAGAATTTTGACGACTAGAAAAATACTCACCACAACAACAACGCGTACATCACCGCCGCCATTGTTGTGCACGCCGTTCCAGAAATTTCTTGATTTGAGAACACAGTGAAAAAGATGTAGAATAAAAGTAGATCGAAATGATAAGCCAGTGCTAGAAAATCCCGTCGCGCCAGATTATGACCTCGAACATAGGTGTAGAGGCGACTTTTCGCCAGGTAGGGAATACTGAAACTTTCATATGGGRTTACTGTACCTCAAACAAAATCTTACTAGGCAGCCAGACTAAAGAATGTGAGAAAGACCAGTGAGAAAATCGATAATCCGTTTACAACATATCCCAATGTGATAAGAGCATTGTCACAGACATTCGGGTCGTTCAGAGCGGCATCCTGGAATTTTTTAATTTTTCGAACAATAGAACTTTTTGCACCGAGCATACTGATAATCAGTTGGAACTGATCGCTATAATTTTGGAATTATAGCAAAAAATTGAGCCAGGCTACTTACCACAATAATAGCGAAATCCGTCAAATGTGTACACCTTGCCTCGAGAATCCCATCCGAATCAGTCATAATTTCACATTCTCGATTATCGGCCCACTGTCTGCGTCCAACATCCCACCAAGTGACTTTTAAACTTCCATGAAGGGGTCGCAAAAGTGTCGAAACATTGAAACGGAGTAGTGCCATTGGAGCATCAGATGTGGAGGAGATGGACACAGCTACACCGTTATTGAGTACGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>499 269 119 113</canonical_bands>
                <polymorphic_bands>612 269 119</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTGAGAACACAGTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>GATATGTTGTAAACGGATTATCG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GATTTGAGAACACAGTGAAAAAGATGTAGAATAAAAGTAGATCGAAATGATAAGCCAGTGCTAGAAAATCCCGTCGCGCCAGATTATGACCTCGAACATAGGTGTAGAGGCGACTTTTCGCCAGGTAGGGAATACTGAAACTTTCATATGGGGTTACTGTACCTCAAACAAAATCTTACTAGGCAGCCAGACTAAAGAATGTGAGAAAGACCAGTGAGAAAATCGATAATCCGTTTACAACATATC</canonical_amplicon>
		<polymorphic_amplicon>GATTTGAGAACACAGTGAAAAAGATGTAGAATAAAAGTAGATCGAAATGATAAGCCAGTGCTAGAAAATCCCGTCGCGCCAGATTATGACCTCGAACATAGGTGTAGAGGCGACTTTTCGCCAGGTAGGGAATACTGAAACTTTCATATGGGRTTACTGTACCTCAAACAAAATCTTACTAGGCAGCCAGACTAAAGAATGTGAGAAAGACCAGTGAGAAAATCGATAATCCGTTTACAACATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4531</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>9489</contig_pos>
        <strand>+</strand>
        <context>TTTTGGAATT[A/G]TAGCAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCGAGCATACTGATAATCAGTTGGAACTGATCGCTATAATTTTGGAATT</left_flank>
        <right_flank>TAGCAAAAAATTGAGCCAGGCTACTTACCACAATAATAGCGAAATCCGTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAATATAAAGCTGAAAAACTGAGAATTTTGACGACTAGAAAAATACTCACCACAACAACAACGCGTACATCACCGCCGCCATTGTTGTGCACGCCGTTCCAGAAATTTCTTGATTTGAGAACACAGTGAAAAAGATGTAGAATAAAAGTAGATCGAAATGATAAGCCAGTGCTAGAAAATCCCGTCGCGCCAGATTATGACCTCGAACATAGGTGTAGAGGCGACTTTTCGCCAGGTAGGGAATACTGAAACTTTCATATGGGGTTACTGTACCTCAAACAAAATCTTACTAGGCAGCCAGACTAAAGAATGTGAGAAAGACCAGTGAGAAAATCGATAATCCGTTTACAACATATCCCAATGTGATAAGAGCATTGTCACAGACATTCGGGTCGTTCAGAGCGGCATCCTGGAATTTTTTAATTTTTCGAACAATAGAACTTTTTGCACCGAGCATACTGATAATCAGTTGGAACTGATCGCTATAATTTTGGAATTATAGCAAAAAATTGAGCCAGGCTACTTACCACAATAATAGCGAAATCCGTCAAATGTGTACACCTTGCCTCGAGAATCCCATCCGAATCAGTCATAATTTCACATTCTCGATTATCGGCCCACTGTCTGCGTCCAACATCCCACCAAGTGACTTTTAAACTTCCATGAAGGGGTCGCAAAAGTGTCGAAACATTGAAACGGAGTAGTGCCATTGGAGCATCAGATGTGGAGGAGATGGACACAGCTACACCGTTATTGAGTACGGTAGCACTCATCACCGGTGTTGATGGAAGGGATGTTTGACGAGCGCAAGGGGATAGGGGTACAGTTTCTGAAAAATATTGTTTCATTGAGCTCATAGAAATGTCAGCAAGCGTGGCNAAGCATCGGAAAGCGTCGGCAAGCGTTGGCAAGCATTGGCAAGCGTCAGGAAGCGTCGGCAAGCGTCGGCGAATGCTCGGAAAGCGCTGGCAAGCGTTAGCAAGCGTCGGCGGGCGTCGG</canonical>
            <polymorphic>CCAATATAAAGCTGAAAAACTGAGAATTTTGACGACTAGAAAAATACTCACCACAACAACAACGCGTACATCACCGCCGCCATTGTTGTGCACGCCGTTCCAGAAATTTCTTGATTTGAGAACACAGTGAAAAAGATGTAGAATAAAAGTAGATCGAAATGATAAGCCAGTGCTAGAAAATCCCGTCGCGCCAGATTATGACCTCGAACATAGGTGTAGAGGCGACTTTTCGCCAGGTAGGGAATACTGAAACTTTCATATGGGGTTACTGTACCTCAAACAAAATCTTACTAGGCAGCCAGACTAAAGAATGTGAGAAAGACCAGTGAGAAAATCGATAATCCGTTTACAACATATCCCAATGTGATAAGAGCATTGTCACAGACATTCGGGTCGTTCAGAGCGGCATCCTGGAATTTTTTAATTTTTCGAACAATAGAACTTTTTGCACCGAGCATACTGATAATCAGTTGGAACTGATCGCTATAATTTTGGAATTRTAGCAAAAAATTGAGCCAGGCTACTTACCACAATAATAGCGAAATCCGTCAAATGTGTACACCTTGCCTCGAGAATCCCATCCGAATCAGTCATAATTTCACATTCTCGATTATCGGCCCACTGTCTGCGTCCAACATCCCACCAAGTGACTTTTAAACTTCCATGAAGGGGTCGCAAAAGTGTCGAAACATTGAAACGGAGTAGTGCCATTGGAGCATCAGATGTGGAGGAGATGGACACAGCTACACCGTTATTGAGTACGGTAGCACTCATCACCGGTGTTGATGGAAGGGATGTTTGACGAGCGCAAGGGGATAGGGGTACAGTTTCTGAAAAATATTGTTTCATTGAGCTCATAGAAATGTCAGCAAGCGTGGCNAAGCATCGGAAAGCGTCGGCAAGCGTTGGCAAGCATTGGCAAGCGTCAGGAAGCGTCGGCAAGCGTCGGCGAATGCTCGGAAAGCGCTGGCAAGCGTTAGCAAGCGTCGGCGGGCGTCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATAAGAGCATTGTCACAGACAT</pcr_primer_p1>
		<pcr_primer_p2>CGATAATCGAGAATGTGAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GATAAGAGCATTGTCACAGACATTCGGGTCGTTCAGAGCGGCATCCTGGAATTTTTTAATTTTTCGAACAATAGAACTTTTTGCACCGAGCATACTGATAATCAGTTGGAACTGATCGCTATAATTTTGGAATTATAGCAAAAAATTGAGCCAGGCTACTTACCACAATAATAGCGAAATCCGTCAAATGTGTACACCTTGCCTCGAGAATCCCATCCGAATCAGTCATAATTTCACATTCTCGATTATCG</canonical_amplicon>
		<polymorphic_amplicon>GATAAGAGCATTGTCACAGACATTCGGGTCGTTCAGAGCGGCATCCTGGAATTTTTTAATTTTTCGAACAATAGAACTTTTTGCACCGAGCATACTGATAATCAGTTGGAACTGATCGCTATAATTTTGGAATTRTAGCAAAAAATTGAGCCAGGCTACTTACCACAATAATAGCGAAATCCGTCAAATGTGTACACCTTGCCTCGAGAATCCCATCCGAATCAGTCATAATTTCACATTCTCGATTATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4532</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>9581</contig_pos>
        <strand>+</strand>
        <context>CCGAATCAGT[C/T]ATAATTTCAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATCCGTCAAATGTGTACACCTTGCCTCGAGAATCCCATCCGAATCAGT</left_flank>
        <right_flank>ATAATTTCACATTCTCGATTATCGGCCCACTGTCTGCGTCCAACATCCCA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCCGTTCCAGAAATTTCTTGATTTGAGAACACAGTGAAAAAGATGTAGAATAAAAGTAGATCGAAATGATAAGCCAGTGCTAGAAAATCCCGTCGCGCCAGATTATGACCTCGAACATAGGTGTAGAGGCGACTTTTCGCCAGGTAGGGAATACTGAAACTTTCATATGGGGTTACTGTACCTCAAACAAAATCTTACTAGGCAGCCAGACTAAAGAATGTGAGAAAGACCAGTGAGAAAATCGATAATCCGTTTACAACATATCCCAATGTGATAAGAGCATTGTCACAGACATTCGGGTCGTTCAGAGCGGCATCCTGGAATTTTTTAATTTTTCGAACAATAGAACTTTTTGCACCGAGCATACTGATAATCAGTTGGAACTGATCGCTATAATTTTGGAATTATAGCAAAAAATTGAGCCAGGCTACTTACCACAATAATAGCGAAATCCGTCAAATGTGTACACCTTGCCTCGAGAATCCCATCCGAATCAGTCATAATTTCACATTCTCGATTATCGGCCCACTGTCTGCGTCCAACATCCCACCAAGTGACTTTTAAACTTCCATGAAGGGGTCGCAAAAGTGTCGAAACATTGAAACGGAGTAGTGCCATTGGAGCATCAGATGTGGAGGAGATGGACACAGCTACACCGTTATTGAGTACGGTAGCACTCATCACCGGTGTTGATGGAAGGGATGTTTGACGAGCGCAAGGGGATAGGGGTACAGTTTCTGAAAAATATTGTTTCATTGAGCTCATAGAAATGTCAGCAAGCGTGGCNAAGCATCGGAAAGCGTCGGCAAGCGTTGGCAAGCATTGGCAAGCGTCAGGAAGCGTCGGCAAGCGTCGGCGAATGCTCGGAAAGCGCTGGCAAGCGTTAGCAAGCGTCGGCGGGCGTCGGCGAATGTTCGGATAGCGTCGGAAAGCATCGGCAAGTTTCGGCGGTCGTCGACATGCGTTGGTAAGCATTGGGCAAACATCGGCAAACGTCGA</canonical>
            <polymorphic>CGCCGTTCCAGAAATTTCTTGATTTGAGAACACAGTGAAAAAGATGTAGAATAAAAGTAGATCGAAATGATAAGCCAGTGCTAGAAAATCCCGTCGCGCCAGATTATGACCTCGAACATAGGTGTAGAGGCGACTTTTCGCCAGGTAGGGAATACTGAAACTTTCATATGGGGTTACTGTACCTCAAACAAAATCTTACTAGGCAGCCAGACTAAAGAATGTGAGAAAGACCAGTGAGAAAATCGATAATCCGTTTACAACATATCCCAATGTGATAAGAGCATTGTCACAGACATTCGGGTCGTTCAGAGCGGCATCCTGGAATTTTTTAATTTTTCGAACAATAGAACTTTTTGCACCGAGCATACTGATAATCAGTTGGAACTGATCGCTATAATTTTGGAATTATAGCAAAAAATTGAGCCAGGCTACTTACCACAATAATAGCGAAATCCGTCAAATGTGTACACCTTGCCTCGAGAATCCCATCCGAATCAGTYATAATTTCACATTCTCGATTATCGGCCCACTGTCTGCGTCCAACATCCCACCAAGTGACTTTTAAACTTCCATGAAGGGGTCGCAAAAGTGTCGAAACATTGAAACGGAGTAGTGCCATTGGAGCATCAGATGTGGAGGAGATGGACACAGCTACACCGTTATTGAGTACGGTAGCACTCATCACCGGTGTTGATGGAAGGGATGTTTGACGAGCGCAAGGGGATAGGGGTACAGTTTCTGAAAAATATTGTTTCATTGAGCTCATAGAAATGTCAGCAAGCGTGGCNAAGCATCGGAAAGCGTCGGCAAGCGTTGGCAAGCATTGGCAAGCGTCAGGAAGCGTCGGCAAGCGTCGGCGAATGCTCGGAAAGCGCTGGCAAGCGTTAGCAAGCGTCGGCGGGCGTCGGCGAATGTTCGGATAGCGTCGGAAAGCATCGGCAAGTTTCGGCGGTCGTCGACATGCGTTGGTAAGCATTGGGCAAACATCGGCAAACGTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGGCTACTTACCACAATAATA</pcr_primer_p1>
		<pcr_primer_p2>GTACTCAATAACGGTGTAGCTGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCAGGCTACTTACCACAATAATAGCGAAATCCGTCAAATGTGTACACCTTGCCTCGAGAATCCCATCCGAATCAGTCATAATTTCACATTCTCGATTATCGGCCCACTGTCTGCGTCCAACATCCCACCAAGTGACTTTTAAACTTCCATGAAGGGGTCGCAAAAGTGTCGAAACATTGAAACGGAGTAGTGCCATTGGAGCATCAGATGTGGAGGAGATGGACACAGCTACACCGTTATTGAGTAC</canonical_amplicon>
		<polymorphic_amplicon>CCAGGCTACTTACCACAATAATAGCGAAATCCGTCAAATGTGTACACCTTGCCTCGAGAATCCCATCCGAATCAGTYATAATTTCACATTCTCGATTATCGGCCCACTGTCTGCGTCCAACATCCCACCAAGTGACTTTTAAACTTCCATGAAGGGGTCGCAAAAGTGTCGAAACATTGAAACGGAGTAGTGCCATTGGAGCATCAGATGTGGAGGAGATGGACACAGCTACACCGTTATTGAGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4533</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>11562</contig_pos>
        <strand>+</strand>
        <context>GTAGTTTGTA[A/G]TATAGGAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTTCTGGTGGTTGTAGTTTGTAGTCGGGTTGTAGTCTTTGTAGTTTGTA</left_flank>
        <right_flank>TATAGGAGTTGTAGTTTGTAGGGGAGTTGTAGTCTTTGTAGTTTGTAATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTGAGTACGGTAGACACGTTGTTGGGTCCCACACCGCTCTGGAAAATGTTGACTACTGTAGGGGGATTACTGTAGCCACCAGTTCAGGTCACCGCCTACTTCCTTCACGAATTATTATTAACTCAATGTTTTCTAATTAAAAAAAGTAATCCGATTATTAATAATTGTTTGTTGTGTCCCGGAATTATTTTTTCACAAAATTTTCCGATTTTTTCTTAAAATTACTAACATCACTCAAATTTTTTAGCGTCGGCACAAACGCATCAGGTGTCGTCGTCGTCGTGGGGTGTGATGACGTTGTGGTTGACGACGTCATCGATGACGTGGCATTCGTGGAATTTTTGACGGTTCTGTAATCGATTATCAATTAACTTTTTGAATTTCTTAATTGGGTCAACTATCACACGTGCTAGTGCTGCTTGTTGTTGTTGTTGGCATGCCTGTGGTGGTTCTGGTGGTTGTAGTTTGTAGTCGGGTTGTAGTCTTTGTAGTTTGTAATATAGGAGTTGTAGTTTGTAGGGGAGTTGTAGTCTTTGTAGTTTGTAATATAGGAGTTGTAGTTTGTAGGGGAGTTGTAGTCTTTGTAGTCATGTTGGTGGAGGTAGAAGCAGTGGTGGTTGTAAGCTTAGTGGTTGGTAGCTTTGTAGTCGTCTGGACTAGTGTAGTATTTGGTAGTACTGTAGTTGTTGTTGGGATTACTGTAGTCGATGTGGGTGCGGTAGTTGTGGGTACGGTAGTTGTGGTTAGAAACCTTGTAGTACTCGTGGCGTCCATGGATGTTGTTGGTTGGTAGTTCCAGAATGGGTGATTCGCAATGCTGGAATTTTTTTTTGAATTTTATAAAAATTGAACATTTTGTATTTTTTAAGACATTGCAAGACACAGAAATATGGAGGATTTTCAGATTTAAAGAAATAAGAAATAAATATGGAGGATTTTCAGATTTAATAAAAAAAAAAAAAAAAGAAATTCAGAAATTCAGAAATTCAAAAATTCAG</canonical>
            <polymorphic>CATTGAGTACGGTAGACACGTTGTTGGGTCCCACACCGCTCTGGAAAATGTTGACTACTGTAGGGGGATTACTGTAGCCACCAGTTCAGGTCACCGCCTACTTCCTTCACGAATTATTATTAACTCAATGTTTTCTAATTAAAAAAAGTAATCCGATTATTAATAATTGTTTGTTGTGTCCCGGAATTATTTTTTCACAAAATTTTCCGATTTTTTCTTAAAATTACTAACATCACTCAAATTTTTTAGCGTCGGCACAAACGCATCAGGTGTCGTCGTCGTCGTGGGGTGTGATGACGTTGTGGTTGACGACGTCATCGATGACGTGGCATTCGTGGAATTTTTGACGGTTCTGTAATCGATTATCAATTAACTTTTTGAATTTCTTAATTGGGTCAACTATCACACGTGCTAGTGCTGCTTGTTGTTGTTGTTGGCATGCCTGTGGTGGTTCTGGTGGTTGTAGTTTGTAGTCGGGTTGTAGTCTTTGTAGTTTGTARTATAGGAGTTGTAGTTTGTAGGGGAGTTGTAGTCTTTGTAGTTTGTAATATAGGAGTTGTAGTTTGTAGGGGAGTTGTAGTCTTTGTAGTCATGTTGGTGGAGGTAGAAGCAGTGGTGGTTGTAAGCTTAGTGGTTGGTAGCTTTGTAGTCGTCTGGACTAGTGTAGTATTTGGTAGTACTGTAGTTGTTGTTGGGATTACTGTAGTCGATGTGGGTGCGGTAGTTGTGGGTACGGTAGTTGTGGTTAGAAACCTTGTAGTACTCGTGGCGTCCATGGATGTTGTTGGTTGGTAGTTCCAGAATGGGTGATTCGCAATGCTGGAATTTTTTTTTGAATTTTATAAAAATTGAACATTTTGTATTTTTTAAGACATTGCAAGACACAGAAATATGGAGGATTTTCAGATTTAAAGAAATAAGAAATAAATATGGAGGATTTTCAGATTTAATAAAAAAAAAAAAAAAAGAAATTCAGAAATTCAGAAATTCAAAAATTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTAATTGGGTCAACTATCAC</pcr_primer_p1>
		<pcr_primer_p2>CACTAAGCTTACAACCACCACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTTAATTGGGTCAACTATCACACGTGCTAGTGCTGCTTGTTGTTGTTGTTGGCATGCCTGTGGTGGTTCTGGTGGTTGTAGTTTGTAGTCGGGTTGTAGTCTTTGTAGTTTGTAATATAGGAGTTGTAGTTTGTAGGGGAGTTGTAGTCTTTGTAGTTTGTAATATAGGAGTTGTAGTTTGTAGGGGAGTTGTAGTCTTTGTAGTCATGTTGGTGGAGGTAGAAGCAGTGGTGGTTGTAAGCTTAGTG</canonical_amplicon>
		<polymorphic_amplicon>TTCTTAATTGGGTCAACTATCACACGTGCTAGTGCTGCTTGTTGTTGTTGTTGGCATGCCTGTGGTGGTTCTGGTGGTTGTAGTTTGTAGTCGGGTTGTAGTCTTTGTAGTTTGTARTATAGGAGTTGTAGTTTGTAGGGGAGTTGTAGTCTTTGTAGTTTGTAATATAGGAGTTGTAGTTTGTAGGGGAGTTGTAGTCTTTGTAGTCATGTTGGTGGAGGTAGAAGCAGTGGTGGTTGTAAGCTTAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4534</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>11505</contig_pos>
        <strand>+</strand>
        <context>GTTGGCATGC[C/T]TGTGGTGGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGTCAACTATCACACGTGCTAGTGCTGCTTGTTGTTGTTGTTGGCATGC</left_flank>
        <right_flank>TGTGGTGGTTCTGGTGGTTGTAGTTTGTAGTCGGGTTGTAGTCTTTGTAG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCATGACTTGAGTGGAATTCAAATTCGGACCCATTTTCGAATAGGTCAGCGTTTCATTGAGTACGGTAGACACGTTGTTGGGTCCCACACCGCTCTGGAAAATGTTGACTACTGTAGGGGGATTACTGTAGCCACCAGTTCAGGTCACCGCCTACTTCCTTCACGAATTATTATTAACTCAATGTTTTCTAATTAAAAAAAGTAATCCGATTATTAATAATTGTTTGTTGTGTCCCGGAATTATTTTTTCACAAAATTTTCCGATTTTTTCTTAAAATTACTAACATCACTCAAATTTTTTAGCGTCGGCACAAACGCATCAGGTGTCGTCGTCGTCGTGGGGTGTGATGACGTTGTGGTTGACGACGTCATCGATGACGTGGCATTCGTGGAATTTTTGACGGTTCTGTAATCGATTATCAATTAACTTTTTGAATTTCTTAATTGGGTCAACTATCACACGTGCTAGTGCTGCTTGTTGTTGTTGTTGGCATGCCTGTGGTGGTTCTGGTGGTTGTAGTTTGTAGTCGGGTTGTAGTCTTTGTAGTTTGTAATATAGGAGTTGTAGTTTGTAGGGGAGTTGTAGTCTTTGTAGTTTGTAATATAGGAGTTGTAGTTTGTAGGGGAGTTGTAGTCTTTGTAGTCATGTTGGTGGAGGTAGAAGCAGTGGTGGTTGTAAGCTTAGTGGTTGGTAGCTTTGTAGTCGTCTGGACTAGTGTAGTATTTGGTAGTACTGTAGTTGTTGTTGGGATTACTGTAGTCGATGTGGGTGCGGTAGTTGTGGGTACGGTAGTTGTGGTTAGAAACCTTGTAGTACTCGTGGCGTCCATGGATGTTGTTGGTTGGTAGTTCCAGAATGGGTGATTCGCAATGCTGGAATTTTTTTTTGAATTTTATAAAAATTGAACATTTTGTATTTTTTAAGACATTGCAAGACACAGAAATATGGAGGATTTTCAGATTTAAAGAAATAAGAAATAAATATGGAGGATTTTCA</canonical>
            <polymorphic>TTTCCATGACTTGAGTGGAATTCAAATTCGGACCCATTTTCGAATAGGTCAGCGTTTCATTGAGTACGGTAGACACGTTGTTGGGTCCCACACCGCTCTGGAAAATGTTGACTACTGTAGGGGGATTACTGTAGCCACCAGTTCAGGTCACCGCCTACTTCCTTCACGAATTATTATTAACTCAATGTTTTCTAATTAAAAAAAGTAATCCGATTATTAATAATTGTTTGTTGTGTCCCGGAATTATTTTTTCACAAAATTTTCCGATTTTTTCTTAAAATTACTAACATCACTCAAATTTTTTAGCGTCGGCACAAACGCATCAGGTGTCGTCGTCGTCGTGGGGTGTGATGACGTTGTGGTTGACGACGTCATCGATGACGTGGCATTCGTGGAATTTTTGACGGTTCTGTAATCGATTATCAATTAACTTTTTGAATTTCTTAATTGGGTCAACTATCACACGTGCTAGTGCTGCTTGTTGTTGTTGTTGGCATGCYTGTGGTGGTTCTGGTGGTTGTAGTTTGTAGTCGGGTTGTAGTCTTTGTAGTTTGTAATATAGGAGTTGTAGTTTGTAGGGGAGTTGTAGTCTTTGTAGTTTGTAATATAGGAGTTGTAGTTTGTAGGGGAGTTGTAGTCTTTGTAGTCATGTTGGTGGAGGTAGAAGCAGTGGTGGTTGTAAGCTTAGTGGTTGGTAGCTTTGTAGTCGTCTGGACTAGTGTAGTATTTGGTAGTACTGTAGTTGTTGTTGGGATTACTGTAGTCGATGTGGGTGCGGTAGTTGTGGGTACGGTAGTTGTGGTTAGAAACCTTGTAGTACTCGTGGCGTCCATGGATGTTGTTGGTTGGTAGTTCCAGAATGGGTGATTCGCAATGCTGGAATTTTTTTTTGAATTTTATAAAAATTGAACATTTTGTATTTTTTAAGACATTGCAAGACACAGAAATATGGAGGATTTTCAGATTTAAAGAAATAAGAAATAAATATGGAGGATTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTAATTGGGTCAACTATCAC</pcr_primer_p1>
		<pcr_primer_p2>CACTAAGCTTACAACCACCACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTTAATTGGGTCAACTATCACACGTGCTAGTGCTGCTTGTTGTTGTTGTTGGCATGCCTGTGGTGGTTCTGGTGGTTGTAGTTTGTAGTCGGGTTGTAGTCTTTGTAGTTTGTAATATAGGAGTTGTAGTTTGTAGGGGAGTTGTAGTCTTTGTAGTTTGTAATATAGGAGTTGTAGTTTGTAGGGGAGTTGTAGTCTTTGTAGTCATGTTGGTGGAGGTAGAAGCAGTGGTGGTTGTAAGCTTAGTG</canonical_amplicon>
		<polymorphic_amplicon>TTCTTAATTGGGTCAACTATCACACGTGCTAGTGCTGCTTGTTGTTGTTGTTGGCATGCYTGTGGTGGTTCTGGTGGTTGTAGTTTGTAGTCGGGTTGTAGTCTTTGTAGTTTGTAATATAGGAGTTGTAGTTTGTAGGGGAGTTGTAGTCTTTGTAGTTTGTAATATAGGAGTTGTAGTTTGTAGGGGAGTTGTAGTCTTTGTAGTCATGTTGGTGGAGGTAGAAGCAGTGGTGGTTGTAAGCTTAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4535</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>11411</contig_pos>
        <strand>+</strand>
        <context>AATTTTTGAC[A/G]GTTCTGTAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTGTGGTTGACGACGTCATCGATGACGTGGCATTCGTGGAATTTTTGAC</left_flank>
        <right_flank>GTTCTGTAATCGATTATCAATTAACTTTTTGAATTTCTTAATTGGGTCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGAAAATTTTGAAAAGTAATTTTTTGAATTTAAGATTTTTACCTCTGTTGTCAATCCGGGAACATTGGCGGCGTTCACTAGAATCGTTGAAATTTCCATGACTTGAGTGGAATTCAAATTCGGACCCATTTTCGAATAGGTCAGCGTTTCATTGAGTACGGTAGACACGTTGTTGGGTCCCACACCGCTCTGGAAAATGTTGACTACTGTAGGGGGATTACTGTAGCCACCAGTTCAGGTCACCGCCTACTTCCTTCACGAATTATTATTAACTCAATGTTTTCTAATTAAAAAAAGTAATCCGATTATTAATAATTGTTTGTTGTGTCCCGGAATTATTTTTTCACAAAATTTTCCGATTTTTTCTTAAAATTACTAACATCACTCAAATTTTTTAGCGTCGGCACAAACGCATCAGGTGTCGTCGTCGTCGTGGGGTGTGATGACGTTGTGGTTGACGACGTCATCGATGACGTGGCATTCGTGGAATTTTTGACGGTTCTGTAATCGATTATCAATTAACTTTTTGAATTTCTTAATTGGGTCAACTATCACACGTGCTAGTGCTGCTTGTTGTTGTTGTTGGCATGCCTGTGGTGGTTCTGGTGGTTGTAGTTTGTAGTCGGGTTGTAGTCTTTGTAGTTTGTAATATAGGAGTTGTAGTTTGTAGGGGAGTTGTAGTCTTTGTAGTTTGTAATATAGGAGTTGTAGTTTGTAGGGGAGTTGTAGTCTTTGTAGTCATGTTGGTGGAGGTAGAAGCAGTGGTGGTTGTAAGCTTAGTGGTTGGTAGCTTTGTAGTCGTCTGGACTAGTGTAGTATTTGGTAGTACTGTAGTTGTTGTTGGGATTACTGTAGTCGATGTGGGTGCGGTAGTTGTGGGTACGGTAGTTGTGGTTAGAAACCTTGTAGTACTCGTGGCGTCCATGGATGTTGTTGGTTGGTAGTTCCAGAATGGGTGATTCGCAATGCTGGAATTTTTTTTTGAATTTTATAAAAAT</canonical>
            <polymorphic>TCTGAAAATTTTGAAAAGTAATTTTTTGAATTTAAGATTTTTACCTCTGTTGTCAATCCGGGAACATTGGCGGCGTTCACTAGAATCGTTGAAATTTCCATGACTTGAGTGGAATTCAAATTCGGACCCATTTTCGAATAGGTCAGCGTTTCATTGAGTACGGTAGACACGTTGTTGGGTCCCACACCGCTCTGGAAAATGTTGACTACTGTAGGGGGATTACTGTAGCCACCAGTTCAGGTCACCGCCTACTTCCTTCACGAATTATTATTAACTCAATGTTTTCTAATTAAAAAAAGTAATCCGATTATTAATAATTGTTTGTTGTGTCCCGGAATTATTTTTTCACAAAATTTTCCGATTTTTTCTTAAAATTACTAACATCACTCAAATTTTTTAGCGTCGGCACAAACGCATCAGGTGTCGTCGTCGTCGTGGGGTGTGATGACGTTGTGGTTGACGACGTCATCGATGACGTGGCATTCGTGGAATTTTTGACRGTTCTGTAATCGATTATCAATTAACTTTTTGAATTTCTTAATTGGGTCAACTATCACACGTGCTAGTGCTGCTTGTTGTTGTTGTTGGCATGCCTGTGGTGGTTCTGGTGGTTGTAGTTTGTAGTCGGGTTGTAGTCTTTGTAGTTTGTAATATAGGAGTTGTAGTTTGTAGGGGAGTTGTAGTCTTTGTAGTTTGTAATATAGGAGTTGTAGTTTGTAGGGGAGTTGTAGTCTTTGTAGTCATGTTGGTGGAGGTAGAAGCAGTGGTGGTTGTAAGCTTAGTGGTTGGTAGCTTTGTAGTCGTCTGGACTAGTGTAGTATTTGGTAGTACTGTAGTTGTTGTTGGGATTACTGTAGTCGATGTGGGTGCGGTAGTTGTGGGTACGGTAGTTGTGGTTAGAAACCTTGTAGTACTCGTGGCGTCCATGGATGTTGTTGGTTGGTAGTTCCAGAATGGGTGATTCGCAATGCTGGAATTTTTTTTTGAATTTTATAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCACAAAATTTTCCGATTT</pcr_primer_p1>
		<pcr_primer_p2>AACAACAACAAGCAGCACTA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TTCACAAAATTTTCCGATTTTTTCTTAAAATTACTAACATCACTCAAATTTTTTAGCGTCGGCACAAACGCATCAGGTGTCGTCGTCGTCGTGGGGTGTGATGACGTTGTGGTTGACGACGTCATCGATGACGTGGCATTCGTGGAATTTTTGACGGTTCTGTAATCGATTATCAATTAACTTTTTGAATTTCTTAATTGGGTCAACTATCACACGTGCTAGTGCTGCTTGTTGTTGTT</canonical_amplicon>
		<polymorphic_amplicon>TTCACAAAATTTTCCGATTTTTTCTTAAAATTACTAACATCACTCAAATTTTTTAGCGTCGGCACAAACGCATCAGGTGTCGTCGTCGTCGTGGGGTGTGATGACGTTGTGGTTGACGACGTCATCGATGACGTGGCATTCGTGGAATTTTTGACRGTTCTGTAATCGATTATCAATTAACTTTTTGAATTTCTTAATTGGGTCAACTATCACACGTGCTAGTGCTGCTTGTTGTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4536</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>11352</contig_pos>
        <strand>+</strand>
        <context>CGTCGTGGGG[G/T]GTGATGACGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTTTTTAGCGTCGGCACAAACGCATCAGGTGTCGTCGTCGTCGTGGGG</left_flank>
        <right_flank>GTGATGACGTTGTGGTTGACGACGTCATCGATGACGTGGCATTCGTGGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGGTAGTAGGATCGACATAGAGCATGTTGTCTAGATTGTGAAGGATTTGATAGGAGTTCTGAAAATTTTGAAAAGTAATTTTTTGAATTTAAGATTTTTACCTCTGTTGTCAATCCGGGAACATTGGCGGCGTTCACTAGAATCGTTGAAATTTCCATGACTTGAGTGGAATTCAAATTCGGACCCATTTTCGAATAGGTCAGCGTTTCATTGAGTACGGTAGACACGTTGTTGGGTCCCACACCGCTCTGGAAAATGTTGACTACTGTAGGGGGATTACTGTAGCCACCAGTTCAGGTCACCGCCTACTTCCTTCACGAATTATTATTAACTCAATGTTTTCTAATTAAAAAAAGTAATCCGATTATTAATAATTGTTTGTTGTGTCCCGGAATTATTTTTTCACAAAATTTTCCGATTTTTTCTTAAAATTACTAACATCACTCAAATTTTTTAGCGTCGGCACAAACGCATCAGGTGTCGTCGTCGTCGTGGGGTGTGATGACGTTGTGGTTGACGACGTCATCGATGACGTGGCATTCGTGGAATTTTTGACGGTTCTGTAATCGATTATCAATTAACTTTTTGAATTTCTTAATTGGGTCAACTATCACACGTGCTAGTGCTGCTTGTTGTTGTTGTTGGCATGCCTGTGGTGGTTCTGGTGGTTGTAGTTTGTAGTCGGGTTGTAGTCTTTGTAGTTTGTAATATAGGAGTTGTAGTTTGTAGGGGAGTTGTAGTCTTTGTAGTTTGTAATATAGGAGTTGTAGTTTGTAGGGGAGTTGTAGTCTTTGTAGTCATGTTGGTGGAGGTAGAAGCAGTGGTGGTTGTAAGCTTAGTGGTTGGTAGCTTTGTAGTCGTCTGGACTAGTGTAGTATTTGGTAGTACTGTAGTTGTTGTTGGGATTACTGTAGTCGATGTGGGTGCGGTAGTTGTGGGTACGGTAGTTGTGGTTAGAAACCTTGTAGTACTCGTGGCGTCCATGGATGTTGTTGGTT</canonical>
            <polymorphic>CATGGTAGTAGGATCGACATAGAGCATGTTGTCTAGATTGTGAAGGATTTGATAGGAGTTCTGAAAATTTTGAAAAGTAATTTTTTGAATTTAAGATTTTTACCTCTGTTGTCAATCCGGGAACATTGGCGGCGTTCACTAGAATCGTTGAAATTTCCATGACTTGAGTGGAATTCAAATTCGGACCCATTTTCGAATAGGTCAGCGTTTCATTGAGTACGGTAGACACGTTGTTGGGTCCCACACCGCTCTGGAAAATGTTGACTACTGTAGGGGGATTACTGTAGCCACCAGTTCAGGTCACCGCCTACTTCCTTCACGAATTATTATTAACTCAATGTTTTCTAATTAAAAAAAGTAATCCGATTATTAATAATTGTTTGTTGTGTCCCGGAATTATTTTTTCACAAAATTTTCCGATTTTTTCTTAAAATTACTAACATCACTCAAATTTTTTAGCGTCGGCACAAACGCATCAGGTGTCGTCGTCGTCGTGGGGKGTGATGACGTTGTGGTTGACGACGTCATCGATGACGTGGCATTCGTGGAATTTTTGACGGTTCTGTAATCGATTATCAATTAACTTTTTGAATTTCTTAATTGGGTCAACTATCACACGTGCTAGTGCTGCTTGTTGTTGTTGTTGGCATGCCTGTGGTGGTTCTGGTGGTTGTAGTTTGTAGTCGGGTTGTAGTCTTTGTAGTTTGTAATATAGGAGTTGTAGTTTGTAGGGGAGTTGTAGTCTTTGTAGTTTGTAATATAGGAGTTGTAGTTTGTAGGGGAGTTGTAGTCTTTGTAGTCATGTTGGTGGAGGTAGAAGCAGTGGTGGTTGTAAGCTTAGTGGTTGGTAGCTTTGTAGTCGTCTGGACTAGTGTAGTATTTGGTAGTACTGTAGTTGTTGTTGGGATTACTGTAGTCGATGTGGGTGCGGTAGTTGTGGGTACGGTAGTTGTGGTTAGAAACCTTGTAGTACTCGTGGCGTCCATGGATGTTGTTGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>141 96 69 68 58 50 45 42 38 32 31 30 24 24 22 22 19 16 15 15 15 15 15 14 13 11 11 9 9 6 5 4 4 3 3 2 2 2</canonical_bands>
                <polymorphic_bands>141 96 69 68 58 50 45 42 38 32 31 30 24 24 22 22 19 16 15 15 15 15 15 14 13 11 11 9 9 7 6 4 4 3 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCACAAAATTTTCCGATTT</pcr_primer_p1>
		<pcr_primer_p2>AACAACAACAAGCAGCACTA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TTCACAAAATTTTCCGATTTTTTCTTAAAATTACTAACATCACTCAAATTTTTTAGCGTCGGCACAAACGCATCAGGTGTCGTCGTCGTCGTGGGGTGTGATGACGTTGTGGTTGACGACGTCATCGATGACGTGGCATTCGTGGAATTTTTGACGGTTCTGTAATCGATTATCAATTAACTTTTTGAATTTCTTAATTGGGTCAACTATCACACGTGCTAGTGCTGCTTGTTGTTGTT</canonical_amplicon>
		<polymorphic_amplicon>TTCACAAAATTTTCCGATTTTTTCTTAAAATTACTAACATCACTCAAATTTTTTAGCGTCGGCACAAACGCATCAGGTGTCGTCGTCGTCGTGGGGKGTGATGACGTTGTGGTTGACGACGTCATCGATGACGTGGCATTCGTGGAATTTTTGACGGTTCTGTAATCGATTATCAATTAACTTTTTGAATTTCTTAATTGGGTCAACTATCACACGTGCTAGTGCTGCTTGTTGTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4537</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>11309</contig_pos>
        <strand>+</strand>
        <context>TCAAATTTTT[C/T]AGCGTCGGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAAAATTTTCCGATTTTTTCTTAAAATTACTAACATCACTCAAATTTTT</left_flank>
        <right_flank>AGCGTCGGCACAAACGCATCAGGTGTCGTCGTCGTCGTGGGGTGTGATGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGTCGATTGAAAATACCTTTGAGCAGAATTCCCACTTTGATACATGGTAGTAGGATCGACATAGAGCATGTTGTCTAGATTGTGAAGGATTTGATAGGAGTTCTGAAAATTTTGAAAAGTAATTTTTTGAATTTAAGATTTTTACCTCTGTTGTCAATCCGGGAACATTGGCGGCGTTCACTAGAATCGTTGAAATTTCCATGACTTGAGTGGAATTCAAATTCGGACCCATTTTCGAATAGGTCAGCGTTTCATTGAGTACGGTAGACACGTTGTTGGGTCCCACACCGCTCTGGAAAATGTTGACTACTGTAGGGGGATTACTGTAGCCACCAGTTCAGGTCACCGCCTACTTCCTTCACGAATTATTATTAACTCAATGTTTTCTAATTAAAAAAAGTAATCCGATTATTAATAATTGTTTGTTGTGTCCCGGAATTATTTTTTCACAAAATTTTCCGATTTTTTCTTAAAATTACTAACATCACTCAAATTTTTTAGCGTCGGCACAAACGCATCAGGTGTCGTCGTCGTCGTGGGGTGTGATGACGTTGTGGTTGACGACGTCATCGATGACGTGGCATTCGTGGAATTTTTGACGGTTCTGTAATCGATTATCAATTAACTTTTTGAATTTCTTAATTGGGTCAACTATCACACGTGCTAGTGCTGCTTGTTGTTGTTGTTGGCATGCCTGTGGTGGTTCTGGTGGTTGTAGTTTGTAGTCGGGTTGTAGTCTTTGTAGTTTGTAATATAGGAGTTGTAGTTTGTAGGGGAGTTGTAGTCTTTGTAGTTTGTAATATAGGAGTTGTAGTTTGTAGGGGAGTTGTAGTCTTTGTAGTCATGTTGGTGGAGGTAGAAGCAGTGGTGGTTGTAAGCTTAGTGGTTGGTAGCTTTGTAGTCGTCTGGACTAGTGTAGTATTTGGTAGTACTGTAGTTGTTGTTGGGATTACTGTAGTCGATGTGGGTGCGGTAGTTGTGGGTACGGTAGTTGTGGTT</canonical>
            <polymorphic>CCGTCGATTGAAAATACCTTTGAGCAGAATTCCCACTTTGATACATGGTAGTAGGATCGACATAGAGCATGTTGTCTAGATTGTGAAGGATTTGATAGGAGTTCTGAAAATTTTGAAAAGTAATTTTTTGAATTTAAGATTTTTACCTCTGTTGTCAATCCGGGAACATTGGCGGCGTTCACTAGAATCGTTGAAATTTCCATGACTTGAGTGGAATTCAAATTCGGACCCATTTTCGAATAGGTCAGCGTTTCATTGAGTACGGTAGACACGTTGTTGGGTCCCACACCGCTCTGGAAAATGTTGACTACTGTAGGGGGATTACTGTAGCCACCAGTTCAGGTCACCGCCTACTTCCTTCACGAATTATTATTAACTCAATGTTTTCTAATTAAAAAAAGTAATCCGATTATTAATAATTGTTTGTTGTGTCCCGGAATTATTTTTTCACAAAATTTTCCGATTTTTTCTTAAAATTACTAACATCACTCAAATTTTTYAGCGTCGGCACAAACGCATCAGGTGTCGTCGTCGTCGTGGGGTGTGATGACGTTGTGGTTGACGACGTCATCGATGACGTGGCATTCGTGGAATTTTTGACGGTTCTGTAATCGATTATCAATTAACTTTTTGAATTTCTTAATTGGGTCAACTATCACACGTGCTAGTGCTGCTTGTTGTTGTTGTTGGCATGCCTGTGGTGGTTCTGGTGGTTGTAGTTTGTAGTCGGGTTGTAGTCTTTGTAGTTTGTAATATAGGAGTTGTAGTTTGTAGGGGAGTTGTAGTCTTTGTAGTTTGTAATATAGGAGTTGTAGTTTGTAGGGGAGTTGTAGTCTTTGTAGTCATGTTGGTGGAGGTAGAAGCAGTGGTGGTTGTAAGCTTAGTGGTTGGTAGCTTTGTAGTCGTCTGGACTAGTGTAGTATTTGGTAGTACTGTAGTTGTTGTTGGGATTACTGTAGTCGATGTGGGTGCGGTAGTTGTGGGTACGGTAGTTGTGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCACAAAATTTTCCGATTT</pcr_primer_p1>
		<pcr_primer_p2>AACAACAACAAGCAGCACTA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TTCACAAAATTTTCCGATTTTTTCTTAAAATTACTAACATCACTCAAATTTTTTAGCGTCGGCACAAACGCATCAGGTGTCGTCGTCGTCGTGGGGTGTGATGACGTTGTGGTTGACGACGTCATCGATGACGTGGCATTCGTGGAATTTTTGACGGTTCTGTAATCGATTATCAATTAACTTTTTGAATTTCTTAATTGGGTCAACTATCACACGTGCTAGTGCTGCTTGTTGTTGTT</canonical_amplicon>
		<polymorphic_amplicon>TTCACAAAATTTTCCGATTTTTTCTTAAAATTACTAACATCACTCAAATTTTTYAGCGTCGGCACAAACGCATCAGGTGTCGTCGTCGTCGTGGGGTGTGATGACGTTGTGGTTGACGACGTCATCGATGACGTGGCATTCGTGGAATTTTTGACGGTTCTGTAATCGATTATCAATTAACTTTTTGAATTTCTTAATTGGGTCAACTATCACACGTGCTAGTGCTGCTTGTTGTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4538</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>44273</contig_pos>
        <strand>+</strand>
        <context>AAAAGTCTGT[A/T]TCTAAACGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTTGTCCAGATGTCCTTGTTCCCTTTCCAAACGCATCCTAAAAGTCTGT</left_flank>
        <right_flank>TCTAAACGAACAAATGTTCTATTTTCCTCTAAATCTTCCTAAACTCTGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATGAACATCGGAGATTGAAAAAGAAGATTTCCGGATGAAGATAATTTTAAAATAATTTTCAAATTCAAAATTTATCCCAGAATAATTTTTAATTTTTTCTCTAACTGTCTGCATCCTCTTCAAAGTTTTGAATGATCGTATATCGGGTTCCAGAGCACCTAAAAGATTGGCTTTTGTTTGGAAATTGAGAATTTTTGATTTTCTATTTTTTCAAACAAGTTTCATTTCTCTAGCTTGTCTAGAAGCCGAGATACATCCGTTTGAAAATTAAAGCGCTGGAGTCGCAGGCGACGAGACGGTCTAACTCCCTGCGTCTCTCAAAAACTTTTAATCGCCCTATCTCGGTTCTTAGAGTAGCTAGAGACTTCATTCTTTCGAGCTCCAATTTCAAAAATGTCATATTTTCCAGAATTTGACATCTAAAAGCCGATCTCTGTCTGTCTATCTGTTTGTCCAGATGTCCTTGTTCCCTTTCCAAACGCATCCTAAAAGTCTGTTTCTAAACGAACAAATGTTCTATTTTCCTCTAAATCTTCCTAAACTCTGCTAATTCAGAACATTCAAATTTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGAGACTTCCCCTTTTTGACCCATTCCGATTACCTCTAATTTCCCCCCGTTCGATTTTCTATTGTCTGCGTCTCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAAAAGGAACATACGCAGCCTTTTCATCCCTCTTTTTATCCGATTCTGGAGACACCACCCCCCCCCCCGACTGACCCCCTCTCTACTATGCATTAATTATGAATAGTGAGTGGTCCCGTTTTGGATAACGCTTGGACCATTTTTACCGCGTAGCTCGGTATTATTGATGGTTTTGA</canonical>
            <polymorphic>CGATGAACATCGGAGATTGAAAAAGAAGATTTCCGGATGAAGATAATTTTAAAATAATTTTCAAATTCAAAATTTATCCCAGAATAATTTTTAATTTTTTCTCTAACTGTCTGCATCCTCTTCAAAGTTTTGAATGATCGTATATCGGGTTCCAGAGCACCTAAAAGATTGGCTTTTGTTTGGAAATTGAGAATTTTTGATTTTCTATTTTTTCAAACAAGTTTCATTTCTCTAGCTTGTCTAGAAGCCGAGATACATCCGTTTGAAAATTAAAGCGCTGGAGTCGCAGGCGACGAGACGGTCTAACTCCCTGCGTCTCTCAAAAACTTTTAATCGCCCTATCTCGGTTCTTAGAGTAGCTAGAGACTTCATTCTTTCGAGCTCCAATTTCAAAAATGTCATATTTTCCAGAATTTGACATCTAAAAGCCGATCTCTGTCTGTCTATCTGTTTGTCCAGATGTCCTTGTTCCCTTTCCAAACGCATCCTAAAAGTCTGTWTCTAAACGAACAAATGTTCTATTTTCCTCTAAATCTTCCTAAACTCTGCTAATTCAGAACATTCAAATTTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGAGACTTCCCCTTTTTGACCCATTCCGATTACCTCTAATTTCCCCCCGTTCGATTTTCTATTGTCTGCGTCTCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAAAAGGAACATACGCAGCCTTTTCATCCCTCTTTTTATCCGATTCTGGAGACACCACCCCCCCCCCCGACTGACCCCCTCTCTACTATGCATTAATTATGAATAGTGAGTGGTCCCGTTTTGGATAACGCTTGGACCATTTTTACCGCGTAGCTCGGTATTATTGATGGTTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGTCTGTCTATCTGTTTGTCC</pcr_primer_p1>
		<pcr_primer_p2>TTATAAGGAGACACGTTCAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTGTCTGTCTATCTGTTTGTCCAGATGTCCTTGTTCCCTTTCCAAACGCATCCTAAAAGTCTGTTTCTAAACGAACAAATGTTCTATTTTCCTCTAAATCTTCCTAAACTCTGCTAATTCAGAACATTCAAATTTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAA</canonical_amplicon>
		<polymorphic_amplicon>TCTGTCTGTCTATCTGTTTGTCCAGATGTCCTTGTTCCCTTTCCAAACGCATCCTAAAAGTCTGTWTCTAAACGAACAAATGTTCTATTTTCCTCTAAATCTTCCTAAACTCTGCTAATTCAGAACATTCAAATTTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4539</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>44311</contig_pos>
        <strand>+</strand>
        <context>TCTAAATCTT[C/T]CTAAACTCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAAAAGTCTGTTTCTAAACGAACAAATGTTCTATTTTCCTCTAAATCTT</left_flank>
        <right_flank>CTAAACTCTGCTAATTCAGAACATTCAAATTTCCTGACCCAGTTTTCAGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGATAATTTTAAAATAATTTTCAAATTCAAAATTTATCCCAGAATAATTTTTAATTTTTTCTCTAACTGTCTGCATCCTCTTCAAAGTTTTGAATGATCGTATATCGGGTTCCAGAGCACCTAAAAGATTGGCTTTTGTTTGGAAATTGAGAATTTTTGATTTTCTATTTTTTCAAACAAGTTTCATTTCTCTAGCTTGTCTAGAAGCCGAGATACATCCGTTTGAAAATTAAAGCGCTGGAGTCGCAGGCGACGAGACGGTCTAACTCCCTGCGTCTCTCAAAAACTTTTAATCGCCCTATCTCGGTTCTTAGAGTAGCTAGAGACTTCATTCTTTCGAGCTCCAATTTCAAAAATGTCATATTTTCCAGAATTTGACATCTAAAAGCCGATCTCTGTCTGTCTATCTGTTTGTCCAGATGTCCTTGTTCCCTTTCCAAACGCATCCTAAAAGTCTGTTTCTAAACGAACAAATGTTCTATTTTCCTCTAAATCTTCCTAAACTCTGCTAATTCAGAACATTCAAATTTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGAGACTTCCCCTTTTTGACCCATTCCGATTACCTCTAATTTCCCCCCGTTCGATTTTCTATTGTCTGCGTCTCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAAAAGGAACATACGCAGCCTTTTCATCCCTCTTTTTATCCGATTCTGGAGACACCACCCCCCCCCCCGACTGACCCCCTCTCTACTATGCATTAATTATGAATAGTGAGTGGTCCCGTTTTGGATAACGCTTGGACCATTTTTACCGCGTAGCTCGGTATTATTGATGGTTTTGAAGGGTTTTTGACACCTTTTAAACGTATTTTCCTTCAAA</canonical>
            <polymorphic>GAAGATAATTTTAAAATAATTTTCAAATTCAAAATTTATCCCAGAATAATTTTTAATTTTTTCTCTAACTGTCTGCATCCTCTTCAAAGTTTTGAATGATCGTATATCGGGTTCCAGAGCACCTAAAAGATTGGCTTTTGTTTGGAAATTGAGAATTTTTGATTTTCTATTTTTTCAAACAAGTTTCATTTCTCTAGCTTGTCTAGAAGCCGAGATACATCCGTTTGAAAATTAAAGCGCTGGAGTCGCAGGCGACGAGACGGTCTAACTCCCTGCGTCTCTCAAAAACTTTTAATCGCCCTATCTCGGTTCTTAGAGTAGCTAGAGACTTCATTCTTTCGAGCTCCAATTTCAAAAATGTCATATTTTCCAGAATTTGACATCTAAAAGCCGATCTCTGTCTGTCTATCTGTTTGTCCAGATGTCCTTGTTCCCTTTCCAAACGCATCCTAAAAGTCTGTTTCTAAACGAACAAATGTTCTATTTTCCTCTAAATCTTYCTAAACTCTGCTAATTCAGAACATTCAAATTTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGAGACTTCCCCTTTTTGACCCATTCCGATTACCTCTAATTTCCCCCCGTTCGATTTTCTATTGTCTGCGTCTCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAAAAGGAACATACGCAGCCTTTTCATCCCTCTTTTTATCCGATTCTGGAGACACCACCCCCCCCCCCGACTGACCCCCTCTCTACTATGCATTAATTATGAATAGTGAGTGGTCCCGTTTTGGATAACGCTTGGACCATTTTTACCGCGTAGCTCGGTATTATTGATGGTTTTGAAGGGTTTTTGACACCTTTTAAACGTATTTTCCTTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGTCTGTCTATCTGTTTGTCC</pcr_primer_p1>
		<pcr_primer_p2>TTATAAGGAGACACGTTCAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTGTCTGTCTATCTGTTTGTCCAGATGTCCTTGTTCCCTTTCCAAACGCATCCTAAAAGTCTGTTTCTAAACGAACAAATGTTCTATTTTCCTCTAAATCTTCCTAAACTCTGCTAATTCAGAACATTCAAATTTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAA</canonical_amplicon>
		<polymorphic_amplicon>TCTGTCTGTCTATCTGTTTGTCCAGATGTCCTTGTTCCCTTTCCAAACGCATCCTAAAAGTCTGTTTCTAAACGAACAAATGTTCTATTTTCCTCTAAATCTTYCTAAACTCTGCTAATTCAGAACATTCAAATTTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4540</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>44341</contig_pos>
        <strand>+</strand>
        <context>AACATTCAAA[C/T]TTCCTGACCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTATTTTCCTCTAAATCTTCCTAAACTCTGCTAATTCAGAACATTCAAA</left_flank>
        <right_flank>TTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATTTATCCCAGAATAATTTTTAATTTTTTCTCTAACTGTCTGCATCCTCTTCAAAGTTTTGAATGATCGTATATCGGGTTCCAGAGCACCTAAAAGATTGGCTTTTGTTTGGAAATTGAGAATTTTTGATTTTCTATTTTTTCAAACAAGTTTCATTTCTCTAGCTTGTCTAGAAGCCGAGATACATCCGTTTGAAAATTAAAGCGCTGGAGTCGCAGGCGACGAGACGGTCTAACTCCCTGCGTCTCTCAAAAACTTTTAATCGCCCTATCTCGGTTCTTAGAGTAGCTAGAGACTTCATTCTTTCGAGCTCCAATTTCAAAAATGTCATATTTTCCAGAATTTGACATCTAAAAGCCGATCTCTGTCTGTCTATCTGTTTGTCCAGATGTCCTTGTTCCCTTTCCAAACGCATCCTAAAAGTCTGTTTCTAAACGAACAAATGTTCTATTTTCCTCTAAATCTTCCTAAACTCTGCTAATTCAGAACATTCAAATTTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGAGACTTCCCCTTTTTGACCCATTCCGATTACCTCTAATTTCCCCCCGTTCGATTTTCTATTGTCTGCGTCTCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAAAAGGAACATACGCAGCCTTTTCATCCCTCTTTTTATCCGATTCTGGAGACACCACCCCCCCCCCCGACTGACCCCCTCTCTACTATGCATTAATTATGAATAGTGAGTGGTCCCGTTTTGGATAACGCTTGGACCATTTTTACCGCGTAGCTCGGTATTATTGATGGTTTTGAAGGGTTTTTGACACCTTTTAAACGTATTTTCCTTCAAAACTCTAATTTTTTTTTCAAATATTCAAACC</canonical>
            <polymorphic>AAAATTTATCCCAGAATAATTTTTAATTTTTTCTCTAACTGTCTGCATCCTCTTCAAAGTTTTGAATGATCGTATATCGGGTTCCAGAGCACCTAAAAGATTGGCTTTTGTTTGGAAATTGAGAATTTTTGATTTTCTATTTTTTCAAACAAGTTTCATTTCTCTAGCTTGTCTAGAAGCCGAGATACATCCGTTTGAAAATTAAAGCGCTGGAGTCGCAGGCGACGAGACGGTCTAACTCCCTGCGTCTCTCAAAAACTTTTAATCGCCCTATCTCGGTTCTTAGAGTAGCTAGAGACTTCATTCTTTCGAGCTCCAATTTCAAAAATGTCATATTTTCCAGAATTTGACATCTAAAAGCCGATCTCTGTCTGTCTATCTGTTTGTCCAGATGTCCTTGTTCCCTTTCCAAACGCATCCTAAAAGTCTGTTTCTAAACGAACAAATGTTCTATTTTCCTCTAAATCTTCCTAAACTCTGCTAATTCAGAACATTCAAAYTTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGAGACTTCCCCTTTTTGACCCATTCCGATTACCTCTAATTTCCCCCCGTTCGATTTTCTATTGTCTGCGTCTCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAAAAGGAACATACGCAGCCTTTTCATCCCTCTTTTTATCCGATTCTGGAGACACCACCCCCCCCCCCGACTGACCCCCTCTCTACTATGCATTAATTATGAATAGTGAGTGGTCCCGTTTTGGATAACGCTTGGACCATTTTTACCGCGTAGCTCGGTATTATTGATGGTTTTGAAGGGTTTTTGACACCTTTTAAACGTATTTTCCTTCAAAACTCTAATTTTTTTTTCAAATATTCAAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>472 220 154 121 31 2</canonical_bands>
                <polymorphic_bands>472 220 185 121 2</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>197 139 125 125 118 92 76 26 26 25 15 15 7 7 5 2</canonical_bands>
                <polymorphic_bands>197 139 125 125 118 92 76 41 26 25 15 7 7 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGTCTGTCTATCTGTTTGTCC</pcr_primer_p1>
		<pcr_primer_p2>TTATAAGGAGACACGTTCAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTGTCTGTCTATCTGTTTGTCCAGATGTCCTTGTTCCCTTTCCAAACGCATCCTAAAAGTCTGTTTCTAAACGAACAAATGTTCTATTTTCCTCTAAATCTTCCTAAACTCTGCTAATTCAGAACATTCAAATTTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAA</canonical_amplicon>
		<polymorphic_amplicon>TCTGTCTGTCTATCTGTTTGTCCAGATGTCCTTGTTCCCTTTCCAAACGCATCCTAAAAGTCTGTTTCTAAACGAACAAATGTTCTATTTTCCTCTAAATCTTCCTAAACTCTGCTAATTCAGAACATTCAAAYTTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4541</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>44405</contig_pos>
        <strand>+</strand>
        <context>ACCTCTTCTC[C/T]CCTCCATCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTC</left_flank>
        <right_flank>CCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGATCGTATATCGGGTTCCAGAGCACCTAAAAGATTGGCTTTTGTTTGGAAATTGAGAATTTTTGATTTTCTATTTTTTCAAACAAGTTTCATTTCTCTAGCTTGTCTAGAAGCCGAGATACATCCGTTTGAAAATTAAAGCGCTGGAGTCGCAGGCGACGAGACGGTCTAACTCCCTGCGTCTCTCAAAAACTTTTAATCGCCCTATCTCGGTTCTTAGAGTAGCTAGAGACTTCATTCTTTCGAGCTCCAATTTCAAAAATGTCATATTTTCCAGAATTTGACATCTAAAAGCCGATCTCTGTCTGTCTATCTGTTTGTCCAGATGTCCTTGTTCCCTTTCCAAACGCATCCTAAAAGTCTGTTTCTAAACGAACAAATGTTCTATTTTCCTCTAAATCTTCCTAAACTCTGCTAATTCAGAACATTCAAATTTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGAGACTTCCCCTTTTTGACCCATTCCGATTACCTCTAATTTCCCCCCGTTCGATTTTCTATTGTCTGCGTCTCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAAAAGGAACATACGCAGCCTTTTCATCCCTCTTTTTATCCGATTCTGGAGACACCACCCCCCCCCCCGACTGACCCCCTCTCTACTATGCATTAATTATGAATAGTGAGTGGTCCCGTTTTGGATAACGCTTGGACCATTTTTACCGCGTAGCTCGGTATTATTGATGGTTTTGAAGGGTTTTTGACACCTTTTAAACGTATTTTCCTTCAAAACTCTAATTTTTTTTTCAAATATTCAAACCCGTTTTTAGGCCCCTAAAGACAACTGTAAAACTTATTTTCATATTTTTGAGTAATTTTAATGGT</canonical>
            <polymorphic>AATGATCGTATATCGGGTTCCAGAGCACCTAAAAGATTGGCTTTTGTTTGGAAATTGAGAATTTTTGATTTTCTATTTTTTCAAACAAGTTTCATTTCTCTAGCTTGTCTAGAAGCCGAGATACATCCGTTTGAAAATTAAAGCGCTGGAGTCGCAGGCGACGAGACGGTCTAACTCCCTGCGTCTCTCAAAAACTTTTAATCGCCCTATCTCGGTTCTTAGAGTAGCTAGAGACTTCATTCTTTCGAGCTCCAATTTCAAAAATGTCATATTTTCCAGAATTTGACATCTAAAAGCCGATCTCTGTCTGTCTATCTGTTTGTCCAGATGTCCTTGTTCCCTTTCCAAACGCATCCTAAAAGTCTGTTTCTAAACGAACAAATGTTCTATTTTCCTCTAAATCTTCCTAAACTCTGCTAATTCAGAACATTCAAATTTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCYCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGAGACTTCCCCTTTTTGACCCATTCCGATTACCTCTAATTTCCCCCCGTTCGATTTTCTATTGTCTGCGTCTCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAAAAGGAACATACGCAGCCTTTTCATCCCTCTTTTTATCCGATTCTGGAGACACCACCCCCCCCCCCGACTGACCCCCTCTCTACTATGCATTAATTATGAATAGTGAGTGGTCCCGTTTTGGATAACGCTTGGACCATTTTTACCGCGTAGCTCGGTATTATTGATGGTTTTGAAGGGTTTTTGACACCTTTTAAACGTATTTTCCTTCAAAACTCTAATTTTTTTTTCAAATATTCAAACCCGTTTTTAGGCCCCTAAAGACAACTGTAAAACTTATTTTCATATTTTTGAGTAATTTTAATGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTATCTGTTTGTCCAGATGTC</pcr_primer_p1>
		<pcr_primer_p2>TCTTTATAAGGAGACACGTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTCTATCTGTTTGTCCAGATGTCCTTGTTCCCTTTCCAAACGCATCCTAAAAGTCTGTTTCTAAACGAACAAATGTTCTATTTTCCTCTAAATCTTCCTAAACTCTGCTAATTCAGAACATTCAAATTTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GTCTATCTGTTTGTCCAGATGTCCTTGTTCCCTTTCCAAACGCATCCTAAAAGTCTGTTTCTAAACGAACAAATGTTCTATTTTCCTCTAAATCTTCCTAAACTCTGCTAATTCAGAACATTCAAATTTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCYCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4542</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>44425</contig_pos>
        <strand>+</strand>
        <context>ATTTTTGATA[C/G]ATTTGTGACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATA</left_flank>
        <right_flank>ATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGAGACTTCCCCTTTTTG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAGCACCTAAAAGATTGGCTTTTGTTTGGAAATTGAGAATTTTTGATTTTCTATTTTTTCAAACAAGTTTCATTTCTCTAGCTTGTCTAGAAGCCGAGATACATCCGTTTGAAAATTAAAGCGCTGGAGTCGCAGGCGACGAGACGGTCTAACTCCCTGCGTCTCTCAAAAACTTTTAATCGCCCTATCTCGGTTCTTAGAGTAGCTAGAGACTTCATTCTTTCGAGCTCCAATTTCAAAAATGTCATATTTTCCAGAATTTGACATCTAAAAGCCGATCTCTGTCTGTCTATCTGTTTGTCCAGATGTCCTTGTTCCCTTTCCAAACGCATCCTAAAAGTCTGTTTCTAAACGAACAAATGTTCTATTTTCCTCTAAATCTTCCTAAACTCTGCTAATTCAGAACATTCAAATTTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGAGACTTCCCCTTTTTGACCCATTCCGATTACCTCTAATTTCCCCCCGTTCGATTTTCTATTGTCTGCGTCTCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAAAAGGAACATACGCAGCCTTTTCATCCCTCTTTTTATCCGATTCTGGAGACACCACCCCCCCCCCCGACTGACCCCCTCTCTACTATGCATTAATTATGAATAGTGAGTGGTCCCGTTTTGGATAACGCTTGGACCATTTTTACCGCGTAGCTCGGTATTATTGATGGTTTTGAAGGGTTTTTGACACCTTTTAAACGTATTTTCCTTCAAAACTCTAATTTTTTTTTCAAATATTCAAACCCGTTTTTAGGCCCCTAAAGACAACTGTAAAACTTATTTTCATATTTTTGAGTAATTTTAATGGTTTTCACATTTGACATGATTC</canonical>
            <polymorphic>CAGAGCACCTAAAAGATTGGCTTTTGTTTGGAAATTGAGAATTTTTGATTTTCTATTTTTTCAAACAAGTTTCATTTCTCTAGCTTGTCTAGAAGCCGAGATACATCCGTTTGAAAATTAAAGCGCTGGAGTCGCAGGCGACGAGACGGTCTAACTCCCTGCGTCTCTCAAAAACTTTTAATCGCCCTATCTCGGTTCTTAGAGTAGCTAGAGACTTCATTCTTTCGAGCTCCAATTTCAAAAATGTCATATTTTCCAGAATTTGACATCTAAAAGCCGATCTCTGTCTGTCTATCTGTTTGTCCAGATGTCCTTGTTCCCTTTCCAAACGCATCCTAAAAGTCTGTTTCTAAACGAACAAATGTTCTATTTTCCTCTAAATCTTCCTAAACTCTGCTAATTCAGAACATTCAAATTTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATASATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGAGACTTCCCCTTTTTGACCCATTCCGATTACCTCTAATTTCCCCCCGTTCGATTTTCTATTGTCTGCGTCTCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAAAAGGAACATACGCAGCCTTTTCATCCCTCTTTTTATCCGATTCTGGAGACACCACCCCCCCCCCCGACTGACCCCCTCTCTACTATGCATTAATTATGAATAGTGAGTGGTCCCGTTTTGGATAACGCTTGGACCATTTTTACCGCGTAGCTCGGTATTATTGATGGTTTTGAAGGGTTTTTGACACCTTTTAAACGTATTTTCCTTCAAAACTCTAATTTTTTTTTCAAATATTCAAACCCGTTTTTAGGCCCCTAAAGACAACTGTAAAACTTATTTTCATATTTTTGAGTAATTTTAATGGTTTTCACATTTGACATGATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTTCAGAGCCAATTAAA</pcr_primer_p1>
		<pcr_primer_p2>TTAGTGTGTTAGTCCGTGTCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGAGACTTCCCCTTTTTGACCCATTCCGATTACCTCTAATTTCCCCCCGTTCGATTTTCTATTGTCTGCGTCTCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAA</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATASATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGAGACTTCCCCTTTTTGACCCATTCCGATTACCTCTAATTTCCCCCCGTTCGATTTTCTATTGTCTGCGTCTCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4543</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>44477</contig_pos>
        <strand>+</strand>
        <context>CCCTTTTTGA[C/T]CCATTCCGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGTGACCTTTTGAACGTGTCTCCTTATAAAGAGACTTCCCCTTTTTGA</left_flank>
        <right_flank>CCATTCCGATTACCTCTAATTTCCCCCCGTTCGATTTTCTATTGTCTGCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATTTTTTCAAACAAGTTTCATTTCTCTAGCTTGTCTAGAAGCCGAGATACATCCGTTTGAAAATTAAAGCGCTGGAGTCGCAGGCGACGAGACGGTCTAACTCCCTGCGTCTCTCAAAAACTTTTAATCGCCCTATCTCGGTTCTTAGAGTAGCTAGAGACTTCATTCTTTCGAGCTCCAATTTCAAAAATGTCATATTTTCCAGAATTTGACATCTAAAAGCCGATCTCTGTCTGTCTATCTGTTTGTCCAGATGTCCTTGTTCCCTTTCCAAACGCATCCTAAAAGTCTGTTTCTAAACGAACAAATGTTCTATTTTCCTCTAAATCTTCCTAAACTCTGCTAATTCAGAACATTCAAATTTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGAGACTTCCCCTTTTTGACCCATTCCGATTACCTCTAATTTCCCCCCGTTCGATTTTCTATTGTCTGCGTCTCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAAAAGGAACATACGCAGCCTTTTCATCCCTCTTTTTATCCGATTCTGGAGACACCACCCCCCCCCCCGACTGACCCCCTCTCTACTATGCATTAATTATGAATAGTGAGTGGTCCCGTTTTGGATAACGCTTGGACCATTTTTACCGCGTAGCTCGGTATTATTGATGGTTTTGAAGGGTTTTTGACACCTTTTAAACGTATTTTCCTTCAAAACTCTAATTTTTTTTTCAAATATTCAAACCCGTTTTTAGGCCCCTAAAGACAACTGTAAAACTTATTTTCATATTTTTGAGTAATTTTAATGGTTTTCACATTTGACATGATTCTAGAGCTCAATCTACCCGGCACCCATACGTTTGATACTTGTGGACCGTCTGT</canonical>
            <polymorphic>CTATTTTTTCAAACAAGTTTCATTTCTCTAGCTTGTCTAGAAGCCGAGATACATCCGTTTGAAAATTAAAGCGCTGGAGTCGCAGGCGACGAGACGGTCTAACTCCCTGCGTCTCTCAAAAACTTTTAATCGCCCTATCTCGGTTCTTAGAGTAGCTAGAGACTTCATTCTTTCGAGCTCCAATTTCAAAAATGTCATATTTTCCAGAATTTGACATCTAAAAGCCGATCTCTGTCTGTCTATCTGTTTGTCCAGATGTCCTTGTTCCCTTTCCAAACGCATCCTAAAAGTCTGTTTCTAAACGAACAAATGTTCTATTTTCCTCTAAATCTTCCTAAACTCTGCTAATTCAGAACATTCAAATTTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGAGACTTCCCCTTTTTGAYCCATTCCGATTACCTCTAATTTCCCCCCGTTCGATTTTCTATTGTCTGCGTCTCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAAAAGGAACATACGCAGCCTTTTCATCCCTCTTTTTATCCGATTCTGGAGACACCACCCCCCCCCCCGACTGACCCCCTCTCTACTATGCATTAATTATGAATAGTGAGTGGTCCCGTTTTGGATAACGCTTGGACCATTTTTACCGCGTAGCTCGGTATTATTGATGGTTTTGAAGGGTTTTTGACACCTTTTAAACGTATTTTCCTTCAAAACTCTAATTTTTTTTTCAAATATTCAAACCCGTTTTTAGGCCCCTAAAGACAACTGTAAAACTTATTTTCATATTTTTGAGTAATTTTAATGGTTTTCACATTTGACATGATTCTAGAGCTCAATCTACCCGGCACCCATACGTTTGATACTTGTGGACCGTCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTTCAGAGCCAATTAAA</pcr_primer_p1>
		<pcr_primer_p2>TTAGTGTGTTAGTCCGTGTCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGAGACTTCCCCTTTTTGACCCATTCCGATTACCTCTAATTTCCCCCCGTTCGATTTTCTATTGTCTGCGTCTCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAA</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGAGACTTCCCCTTTTTGAYCCATTCCGATTACCTCTAATTTCCCCCCGTTCGATTTTCTATTGTCTGCGTCTCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4544</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>44511</contig_pos>
        <strand>+</strand>
        <context>CCCCCGTTCG[A/T]TTTTCTATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACTTCCCCTTTTTGACCCATTCCGATTACCTCTAATTTCCCCCCGTTCG</left_flank>
        <right_flank>TTTTCTATTGTCTGCGTCTCTCTTCTCTCTCTCTCCTCCTGTTGTCCATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCTAGAAGCCGAGATACATCCGTTTGAAAATTAAAGCGCTGGAGTCGCAGGCGACGAGACGGTCTAACTCCCTGCGTCTCTCAAAAACTTTTAATCGCCCTATCTCGGTTCTTAGAGTAGCTAGAGACTTCATTCTTTCGAGCTCCAATTTCAAAAATGTCATATTTTCCAGAATTTGACATCTAAAAGCCGATCTCTGTCTGTCTATCTGTTTGTCCAGATGTCCTTGTTCCCTTTCCAAACGCATCCTAAAAGTCTGTTTCTAAACGAACAAATGTTCTATTTTCCTCTAAATCTTCCTAAACTCTGCTAATTCAGAACATTCAAATTTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGAGACTTCCCCTTTTTGACCCATTCCGATTACCTCTAATTTCCCCCCGTTCGATTTTCTATTGTCTGCGTCTCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAAAAGGAACATACGCAGCCTTTTCATCCCTCTTTTTATCCGATTCTGGAGACACCACCCCCCCCCCCGACTGACCCCCTCTCTACTATGCATTAATTATGAATAGTGAGTGGTCCCGTTTTGGATAACGCTTGGACCATTTTTACCGCGTAGCTCGGTATTATTGATGGTTTTGAAGGGTTTTTGACACCTTTTAAACGTATTTTCCTTCAAAACTCTAATTTTTTTTTCAAATATTCAAACCCGTTTTTAGGCCCCTAAAGACAACTGTAAAACTTATTTTCATATTTTTGAGTAATTTTAATGGTTTTCACATTTGACATGATTCTAGAGCTCAATCTACCCGGCACCCATACGTTTGATACTTGTGGACCGTCTGTTGGCTATTTATACGTTTTTAGACACTTTTAACCA</canonical>
            <polymorphic>GTCTAGAAGCCGAGATACATCCGTTTGAAAATTAAAGCGCTGGAGTCGCAGGCGACGAGACGGTCTAACTCCCTGCGTCTCTCAAAAACTTTTAATCGCCCTATCTCGGTTCTTAGAGTAGCTAGAGACTTCATTCTTTCGAGCTCCAATTTCAAAAATGTCATATTTTCCAGAATTTGACATCTAAAAGCCGATCTCTGTCTGTCTATCTGTTTGTCCAGATGTCCTTGTTCCCTTTCCAAACGCATCCTAAAAGTCTGTTTCTAAACGAACAAATGTTCTATTTTCCTCTAAATCTTCCTAAACTCTGCTAATTCAGAACATTCAAATTTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGAGACTTCCCCTTTTTGACCCATTCCGATTACCTCTAATTTCCCCCCGTTCGWTTTTCTATTGTCTGCGTCTCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAAAAGGAACATACGCAGCCTTTTCATCCCTCTTTTTATCCGATTCTGGAGACACCACCCCCCCCCCCGACTGACCCCCTCTCTACTATGCATTAATTATGAATAGTGAGTGGTCCCGTTTTGGATAACGCTTGGACCATTTTTACCGCGTAGCTCGGTATTATTGATGGTTTTGAAGGGTTTTTGACACCTTTTAAACGTATTTTCCTTCAAAACTCTAATTTTTTTTTCAAATATTCAAACCCGTTTTTAGGCCCCTAAAGACAACTGTAAAACTTATTTTCATATTTTTGAGTAATTTTAATGGTTTTCACATTTGACATGATTCTAGAGCTCAATCTACCCGGCACCCATACGTTTGATACTTGTGGACCGTCTGTTGGCTATTTATACGTTTTTAGACACTTTTAACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 358 140</canonical_bands>
                <polymorphic_bands>860 140</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTTCAGAGCCAATTAAA</pcr_primer_p1>
		<pcr_primer_p2>TTAGTGTGTTAGTCCGTGTCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGAGACTTCCCCTTTTTGACCCATTCCGATTACCTCTAATTTCCCCCCGTTCGATTTTCTATTGTCTGCGTCTCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAA</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGAGACTTCCCCTTTTTGACCCATTCCGATTACCTCTAATTTCCCCCCGTTCGWTTTTCTATTGTCTGCGTCTCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4545</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>44723</contig_pos>
        <strand>+</strand>
        <context>CCGTTTTGGA[C/T]MACGCTTGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCCTCTCTACTATGCATTAATTATGAATAGTGAGTGGTCCCGTTTTGGA</left_flank>
        <right_flank>AACGCTTGGACCATTTTTACCGCGTAGCTCGGTATTATTGATGGTTTTGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGTCCAGATGTCCTTGTTCCCTTTCCAAACGCATCCTAAAAGTCTGTTTCTAAACGAACAAATGTTCTATTTTCCTCTAAATCTTCCTAAACTCTGCTAATTCAGAACATTCAAATTTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGAGACTTCCCCTTTTTGACCCATTCCGATTACCTCTAATTTCCCCCCGTTCGATTTTCTATTGTCTGCGTCTCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAAAAGGAACATACGCAGCCTTTTCATCCCTCTTTTTATCCGATTCTGGAGACACCACCCCCCCCCCCGACTGACCCCCTCTCTACTATGCATTAATTATGAATAGTGAGTGGTCCCGTTTTGGATAACGCTTGGACCATTTTTACCGCGTAGCTCGGTATTATTGATGGTTTTGAAGGGTTTTTGACACCTTTTAAACGTATTTTCCTTCAAAACTCTAATTTTTTTTTCAAATATTCAAACCCGTTTTTAGGCCCCTAAAGACAACTGTAAAACTTATTTTCATATTTTTGAGTAATTTTAATGGTTTTCACATTTGACATGATTCTAGAGCTCAATCTACCCGGCACCCATACGTTTGATACTTGTGGACCGTCTGTTGGCTATTTATACGTTTTTAGACACTTTTAACCACTATTTAGACAATTTTAAAATCATTTCAATCGTTTTTGACACTTTCACCCTTTTCTAGACCAATTTAGCTTTTTTTTGGTAATTTTCACAATCCAAACAGTCCAAAAGTGTTCGAAAACCTTTCAACTTTATTTTAAATTTTTCAAGTCCTTCAAACCGTTATAACAACTTTTTAGAGCCAAGTTTTTCGGATTTCTAGGTCATGACCGAGT</canonical>
            <polymorphic>TTTGTCCAGATGTCCTTGTTCCCTTTCCAAACGCATCCTAAAAGTCTGTTTCTAAACGAACAAATGTTCTATTTTCCTCTAAATCTTCCTAAACTCTGCTAATTCAGAACATTCAAATTTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGAGACTTCCCCTTTTTGACCCATTCCGATTACCTCTAATTTCCCCCCGTTCGATTTTCTATTGTCTGCGTCTCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAAAAGGAACATACGCAGCCTTTTCATCCCTCTTTTTATCCGATTCTGGAGACACCACCCCCCCCCCCGACTGACCCCCTCTCTACTATGCATTAATTATGAATAGTGAGTGGTCCCGTTTTGGAYAACGCTTGGACCATTTTTACCGCGTAGCTCGGTATTATTGATGGTTTTGAAGGGTTTTTGACACCTTTTAAACGTATTTTCCTTCAAAACTCTAATTTTTTTTTCAAATATTCAAACCCGTTTTTAGGCCCCTAAAGACAACTGTAAAACTTATTTTCATATTTTTGAGTAATTTTAATGGTTTTCACATTTGACATGATTCTAGAGCTCAATCTACCCGGCACCCATACGTTTGATACTTGTGGACCGTCTGTTGGCTATTTATACGTTTTTAGACACTTTTAACCACTATTTAGACAATTTTAAAATCATTTCAATCGTTTTTGACACTTTCACCCTTTTCTAGACCAATTTAGCTTTTTTTTGGTAATTTTCACAATCCAAACAGTCCAAAAGTGTTCGAAAACCTTTCAACTTTATTTTAAATTTTTCAAGTCCTTCAAACCGTTATAACAACTTTTTAGAGCCAAGTTTTTCGGATTTCTAGGTCATGACCGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCTTCTCTCTCTCTCCTCCT</pcr_primer_p1>
		<pcr_primer_p2>CCCTTCAAAACCATCAATAATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAAAAGGAACATACGCAGCCTTTTCATCCCTCTTTTTATCCGATTCTGGAGACACCACCCCCCCCCCCGACTGACCCCCTCTCTACTATGCATTAATTATGAATAGTGAGTGGTCCCGTTTTGGATAACGCTTGGACCATTTTTACCGCGTAGCTCGGTATTATTGATGGTTTTGAAGGG</canonical_amplicon>
		<polymorphic_amplicon>TCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAAAAGGAACATACGCAGCCTTTTCATCCCTCTTTTTATCCGATTCTGGAGACACCACCCCCCCCCCCGACTGACCCCCTCTCTACTATGCATTAATTATGAATAGTGAGTGGTCCCGTTTTGGAYAACGCTTGGACCATTTTTACCGCGTAGCTCGGTATTATTGATGGTTTTGAAGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4546</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>44724</contig_pos>
        <strand>+</strand>
        <context>CGTTTTGGAY[A/C]ACGCTTGGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCCTCTCTACTATGCATTAATTATGAATAGTGAGTGGTCCCGTTTTGGAT</left_flank>
        <right_flank>ACGCTTGGACCATTTTTACCGCGTAGCTCGGTATTATTGATGGTTTTGAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTCCAGATGTCCTTGTTCCCTTTCCAAACGCATCCTAAAAGTCTGTTTCTAAACGAACAAATGTTCTATTTTCCTCTAAATCTTCCTAAACTCTGCTAATTCAGAACATTCAAATTTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGAGACTTCCCCTTTTTGACCCATTCCGATTACCTCTAATTTCCCCCCGTTCGATTTTCTATTGTCTGCGTCTCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAAAAGGAACATACGCAGCCTTTTCATCCCTCTTTTTATCCGATTCTGGAGACACCACCCCCCCCCCCGACTGACCCCCTCTCTACTATGCATTAATTATGAATAGTGAGTGGTCCCGTTTTGGATAACGCTTGGACCATTTTTACCGCGTAGCTCGGTATTATTGATGGTTTTGAAGGGTTTTTGACACCTTTTAAACGTATTTTCCTTCAAAACTCTAATTTTTTTTTCAAATATTCAAACCCGTTTTTAGGCCCCTAAAGACAACTGTAAAACTTATTTTCATATTTTTGAGTAATTTTAATGGTTTTCACATTTGACATGATTCTAGAGCTCAATCTACCCGGCACCCATACGTTTGATACTTGTGGACCGTCTGTTGGCTATTTATACGTTTTTAGACACTTTTAACCACTATTTAGACAATTTTAAAATCATTTCAATCGTTTTTGACACTTTCACCCTTTTCTAGACCAATTTAGCTTTTTTTTGGTAATTTTCACAATCCAAACAGTCCAAAAGTGTTCGAAAACCTTTCAACTTTATTTTAAATTTTTCAAGTCCTTCAAACCGTTATAACAACTTTTTAGAGCCAAGTTTTTCGGATTTCTAGGTCATGACCGAGTT</canonical>
            <polymorphic>TTGTCCAGATGTCCTTGTTCCCTTTCCAAACGCATCCTAAAAGTCTGTTTCTAAACGAACAAATGTTCTATTTTCCTCTAAATCTTCCTAAACTCTGCTAATTCAGAACATTCAAATTTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGAGACTTCCCCTTTTTGACCCATTCCGATTACCTCTAATTTCCCCCCGTTCGATTTTCTATTGTCTGCGTCTCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAAAAGGAACATACGCAGCCTTTTCATCCCTCTTTTTATCCGATTCTGGAGACACCACCCCCCCCCCCGACTGACCCCCTCTCTACTATGCATTAATTATGAATAGTGAGTGGTCCCGTTTTGGATMACGCTTGGACCATTTTTACCGCGTAGCTCGGTATTATTGATGGTTTTGAAGGGTTTTTGACACCTTTTAAACGTATTTTCCTTCAAAACTCTAATTTTTTTTTCAAATATTCAAACCCGTTTTTAGGCCCCTAAAGACAACTGTAAAACTTATTTTCATATTTTTGAGTAATTTTAATGGTTTTCACATTTGACATGATTCTAGAGCTCAATCTACCCGGCACCCATACGTTTGATACTTGTGGACCGTCTGTTGGCTATTTATACGTTTTTAGACACTTTTAACCACTATTTAGACAATTTTAAAATCATTTCAATCGTTTTTGACACTTTCACCCTTTTCTAGACCAATTTAGCTTTTTTTTGGTAATTTTCACAATCCAAACAGTCCAAAAGTGTTCGAAAACCTTTCAACTTTATTTTAAATTTTTCAAGTCCTTCAAACCGTTATAACAACTTTTTAGAGCCAAGTTTTTCGGATTTCTAGGTCATGACCGAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCTTCTCTCTCTCTCCTCCT</pcr_primer_p1>
		<pcr_primer_p2>CCCTTCAAAACCATCAATAATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAAAAGGAACATACGCAGCCTTTTCATCCCTCTTTTTATCCGATTCTGGAGACACCACCCCCCCCCCCGACTGACCCCCTCTCTACTATGCATTAATTATGAATAGTGAGTGGTCCCGTTTTGGATAACGCTTGGACCATTTTTACCGCGTAGCTCGGTATTATTGATGGTTTTGAAGGG</canonical_amplicon>
		<polymorphic_amplicon>TCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAAAAGGAACATACGCAGCCTTTTCATCCCTCTTTTTATCCGATTCTGGAGACACCACCCCCCCCCCCGACTGACCCCCTCTCTACTATGCATTAATTATGAATAGTGAGTGGTCCCGTTTTGGATMACGCTTGGACCATTTTTACCGCGTAGCTCGGTATTATTGATGGTTTTGAAGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4547</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>45572</contig_pos>
        <strand>+</strand>
        <context>GTTTTTCTGA[A/T]CATAACtcaa</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGA</left_flank>
        <right_flank>CATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTAGCTTTTTTTTGGTAATTTTCACAATCCAAACAGTCCAAAAGTGTTCGAAAACCTTTCAACTTTATTTTAAATTTTTCAAGTCCTTCAAACCGTTATAACAACTTTTTAGAGCCAAGTTTTTCGGATTTCTAGGTCATGACCGAGTTCTTTGGATTTCTAGGCCATGACCGAATTTTTCGGGTTTCTGGGCCATATTGCGTTTTTAGGTTTTCTAGGTCATGACCGAGTTTAACCAAATTTGACCTGTTTCTCAAAATTCCGATTTGTCTAAATTCTATAATAGTTTTTCTAGTTTTTCAACTTCCATTTCTTTTTCAACTGTGATTTATTTTTTAAAAATCTAATTTTGAAAAAATTAAAATTGTTCTCTAAAAACTGAAATTGTTATTGACCGATGTCTAATTCACACTTTCACACTAATTACTCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTACCTGCTTTTTTAGTATTATCATAACTTCGACCTTAATTATCTCAATTCCTGTAAATGGTATTGAATAGTTGCGAATTAGCAAAATGTGTAAAATTATAATAATCAAAGTATAATAATCATTTTATAAGTTAACATCTTTTTGATAT</canonical>
            <polymorphic>AATTTAGCTTTTTTTTGGTAATTTTCACAATCCAAACAGTCCAAAAGTGTTCGAAAACCTTTCAACTTTATTTTAAATTTTTCAAGTCCTTCAAACCGTTATAACAACTTTTTAGAGCCAAGTTTTTCGGATTTCTAGGTCATGACCGAGTTCTTTGGATTTCTAGGCCATGACCGAATTTTTCGGGTTTCTGGGCCATATTGCGTTTTTAGGTTTTCTAGGTCATGACCGAGTTTAACCAAATTTGACCTGTTTCTCAAAATTCCGATTTGTCTAAATTCTATAATAGTTTTTCTAGTTTTTCAACTTCCATTTCTTTTTCAACTGTGATTTATTTTTTAAAAATCTAATTTTGAAAAAATTAAAATTGTTCTCTAAAAACTGAAATTGTTATTGACCGATGTCTAATTCACACTTTCACACTAATTACTCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGAWCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTACCTGCTTTTTTAGTATTATCATAACTTCGACCTTAATTATCTCAATTCCTGTAAATGGTATTGAATAGTTGCGAATTAGCAAAATGTGTAAAATTATAATAATCAAAGTATAATAATCATTTTATAAGTTAACATCTTTTTGATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>497 344 147 12</canonical_bands>
                <polymorphic_bands>644 344 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTGTTTTCCGGAAGTGAC</pcr_primer_p1>
		<pcr_primer_p2>TAGTTATGGGATAAGGCAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>415</pcr_amplicon_size>
		<canonical_amplicon>TATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTA</canonical_amplicon>
		<polymorphic_amplicon>TATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGAWCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4548</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>45559</contig_pos>
        <strand>+</strand>
        <context>TTTARAGTYA[A/G]GTGTTTTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTA</left_flank>
        <right_flank>GTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTTTCTAGACCAATTTAGCTTTTTTTTGGTAATTTTCACAATCCAAACAGTCCAAAAGTGTTCGAAAACCTTTCAACTTTATTTTAAATTTTTCAAGTCCTTCAAACCGTTATAACAACTTTTTAGAGCCAAGTTTTTCGGATTTCTAGGTCATGACCGAGTTCTTTGGATTTCTAGGCCATGACCGAATTTTTCGGGTTTCTGGGCCATATTGCGTTTTTAGGTTTTCTAGGTCATGACCGAGTTTAACCAAATTTGACCTGTTTCTCAAAATTCCGATTTGTCTAAATTCTATAATAGTTTTTCTAGTTTTTCAACTTCCATTTCTTTTTCAACTGTGATTTATTTTTTAAAAATCTAATTTTGAAAAAATTAAAATTGTTCTCTAAAAACTGAAATTGTTATTGACCGATGTCTAATTCACACTTTCACACTAATTACTCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTACCTGCTTTTTTAGTATTATCATAACTTCGACCTTAATTATCTCAATTCCTGTAAATGGTATTGAATAGTTGCGAATTAGCAAAATGTGTAAAATTATAATAATCAAAGTATAATAATCATTTTATAAGTTAAC</canonical>
            <polymorphic>CCTTTTCTAGACCAATTTAGCTTTTTTTTGGTAATTTTCACAATCCAAACAGTCCAAAAGTGTTCGAAAACCTTTCAACTTTATTTTAAATTTTTCAAGTCCTTCAAACCGTTATAACAACTTTTTAGAGCCAAGTTTTTCGGATTTCTAGGTCATGACCGAGTTCTTTGGATTTCTAGGCCATGACCGAATTTTTCGGGTTTCTGGGCCATATTGCGTTTTTAGGTTTTCTAGGTCATGACCGAGTTTAACCAAATTTGACCTGTTTCTCAAAATTCCGATTTGTCTAAATTCTATAATAGTTTTTCTAGTTTTTCAACTTCCATTTCTTTTTCAACTGTGATTTATTTTTTAAAAATCTAATTTTGAAAAAATTAAAATTGTTCTCTAAAAACTGAAATTGTTATTGACCGATGTCTAATTCACACTTTCACACTAATTACTCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTARGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTACCTGCTTTTTTAGTATTATCATAACTTCGACCTTAATTATCTCAATTCCTGTAAATGGTATTGAATAGTTGCGAATTAGCAAAATGTGTAAAATTATAATAATCAAAGTATAATAATCATTTTATAAGTTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTATTGTTTTCCGGAAGTG</pcr_primer_p1>
		<pcr_primer_p2>TAGTTATGGGATAAGGCAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>417</pcr_amplicon_size>
		<canonical_amplicon>TTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTA</canonical_amplicon>
		<polymorphic_amplicon>TTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTARGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4549</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>45557</contig_pos>
        <strand>+</strand>
        <context>CCTTTARAGT[C/T]ARGTGTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGT</left_flank>
        <right_flank>AGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCCTTTTCTAGACCAATTTAGCTTTTTTTTGGTAATTTTCACAATCCAAACAGTCCAAAAGTGTTCGAAAACCTTTCAACTTTATTTTAAATTTTTCAAGTCCTTCAAACCGTTATAACAACTTTTTAGAGCCAAGTTTTTCGGATTTCTAGGTCATGACCGAGTTCTTTGGATTTCTAGGCCATGACCGAATTTTTCGGGTTTCTGGGCCATATTGCGTTTTTAGGTTTTCTAGGTCATGACCGAGTTTAACCAAATTTGACCTGTTTCTCAAAATTCCGATTTGTCTAAATTCTATAATAGTTTTTCTAGTTTTTCAACTTCCATTTCTTTTTCAACTGTGATTTATTTTTTAAAAATCTAATTTTGAAAAAATTAAAATTGTTCTCTAAAAACTGAAATTGTTATTGACCGATGTCTAATTCACACTTTCACACTAATTACTCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTACCTGCTTTTTTAGTATTATCATAACTTCGACCTTAATTATCTCAATTCCTGTAAATGGTATTGAATAGTTGCGAATTAGCAAAATGTGTAAAATTATAATAATCAAAGTATAATAATCATTTTATAAGTTA</canonical>
            <polymorphic>ACCCTTTTCTAGACCAATTTAGCTTTTTTTTGGTAATTTTCACAATCCAAACAGTCCAAAAGTGTTCGAAAACCTTTCAACTTTATTTTAAATTTTTCAAGTCCTTCAAACCGTTATAACAACTTTTTAGAGCCAAGTTTTTCGGATTTCTAGGTCATGACCGAGTTCTTTGGATTTCTAGGCCATGACCGAATTTTTCGGGTTTCTGGGCCATATTGCGTTTTTAGGTTTTCTAGGTCATGACCGAGTTTAACCAAATTTGACCTGTTTCTCAAAATTCCGATTTGTCTAAATTCTATAATAGTTTTTCTAGTTTTTCAACTTCCATTTCTTTTTCAACTGTGATTTATTTTTTAAAAATCTAATTTTGAAAAAATTAAAATTGTTCTCTAAAAACTGAAATTGTTATTGACCGATGTCTAATTCACACTTTCACACTAATTACTCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTYAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTACCTGCTTTTTTAGTATTATCATAACTTCGACCTTAATTATCTCAATTCCTGTAAATGGTATTGAATAGTTGCGAATTAGCAAAATGTGTAAAATTATAATAATCAAAGTATAATAATCATTTTATAAGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTTTCACACTAATTACTCTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>TAGTTATGGGATAAGGCAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>442</pcr_amplicon_size>
		<canonical_amplicon>CACTTTCACACTAATTACTCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTA</canonical_amplicon>
		<polymorphic_amplicon>CACTTTCACACTAATTACTCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTYAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4550</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>45553</contig_pos>
        <strand>+</strand>
        <context>TCCCCCTTTA[A/G]AGTYARGTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTA</left_flank>
        <right_flank>AGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCACCCTTTTCTAGACCAATTTAGCTTTTTTTTGGTAATTTTCACAATCCAAACAGTCCAAAAGTGTTCGAAAACCTTTCAACTTTATTTTAAATTTTTCAAGTCCTTCAAACCGTTATAACAACTTTTTAGAGCCAAGTTTTTCGGATTTCTAGGTCATGACCGAGTTCTTTGGATTTCTAGGCCATGACCGAATTTTTCGGGTTTCTGGGCCATATTGCGTTTTTAGGTTTTCTAGGTCATGACCGAGTTTAACCAAATTTGACCTGTTTCTCAAAATTCCGATTTGTCTAAATTCTATAATAGTTTTTCTAGTTTTTCAACTTCCATTTCTTTTTCAACTGTGATTTATTTTTTAAAAATCTAATTTTGAAAAAATTAAAATTGTTCTCTAAAAACTGAAATTGTTATTGACCGATGTCTAATTCACACTTTCACACTAATTACTCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTACCTGCTTTTTTAGTATTATCATAACTTCGACCTTAATTATCTCAATTCCTGTAAATGGTATTGAATAGTTGCGAATTAGCAAAATGTGTAAAATTATAATAATCAAAGTATAATAATCATTTTATAA</canonical>
            <polymorphic>TTTCACCCTTTTCTAGACCAATTTAGCTTTTTTTTGGTAATTTTCACAATCCAAACAGTCCAAAAGTGTTCGAAAACCTTTCAACTTTATTTTAAATTTTTCAAGTCCTTCAAACCGTTATAACAACTTTTTAGAGCCAAGTTTTTCGGATTTCTAGGTCATGACCGAGTTCTTTGGATTTCTAGGCCATGACCGAATTTTTCGGGTTTCTGGGCCATATTGCGTTTTTAGGTTTTCTAGGTCATGACCGAGTTTAACCAAATTTGACCTGTTTCTCAAAATTCCGATTTGTCTAAATTCTATAATAGTTTTTCTAGTTTTTCAACTTCCATTTCTTTTTCAACTGTGATTTATTTTTTAAAAATCTAATTTTGAAAAAATTAAAATTGTTCTCTAAAAACTGAAATTGTTATTGACCGATGTCTAATTCACACTTTCACACTAATTACTCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTARAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTACCTGCTTTTTTAGTATTATCATAACTTCGACCTTAATTATCTCAATTCCTGTAAATGGTATTGAATAGTTGCGAATTAGCAAAATGTGTAAAATTATAATAATCAAAGTATAATAATCATTTTATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTTTCACACTAATTACTCTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>TAGTTATGGGATAAGGCAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>442</pcr_amplicon_size>
		<canonical_amplicon>CACTTTCACACTAATTACTCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTA</canonical_amplicon>
		<polymorphic_amplicon>CACTTTCACACTAATTACTCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTARAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4552</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>45891</contig_pos>
        <strand>+</strand>
        <context>TCCAGGAAGA[A/C]TAATAATTAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGA</left_flank>
        <right_flank>TAATAATTAGGGAAAATTGCCTTATCCCATAACTACCTGCTTTTTTAGTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAACTGTGATTTATTTTTTAAAAATCTAATTTTGAAAAAATTAAAATTGTTCTCTAAAAACTGAAATTGTTATTGACCGATGTCTAATTCACACTTTCACACTAATTACTCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTACCTGCTTTTTTAGTATTATCATAACTTCGACCTTAATTATCTCAATTCCTGTAAATGGTATTGAATAGTTGCGAATTAGCAAAATGTGTAAAATTATAATAATCAAAGTATAATAATCATTTTATAAGTTAACATCTTTTTGATATCTTTCACAGCAACTGAGATAATCAGAGTTGAACTTTATCCATCCGTAATTTTGGGCATCTTTTCCGAATCTAACTTTTTTCTACTTTTTTCTTTTCCAATTCCAAAAAGGATTTGCTTTCTGAATCGCTTCATTTCCGAACACACAGATGTACAGGGCAATAAAATGCATTCGGCCGGTAAGTACAGAGAGATACACTATCCTCACCAGGTGGTCACTTCTTTCCCCTTTTGTCTCCTTATTCAGAATTTCTAGAAGCTTCTTCTTCTTCTTCTTTGTATACTACTTTTCTCTCCACCTATTCCCAATTCCTATTATCG</canonical>
            <polymorphic>TTCAACTGTGATTTATTTTTTAAAAATCTAATTTTGAAAAAATTAAAATTGTTCTCTAAAAACTGAAATTGTTATTGACCGATGTCTAATTCACACTTTCACACTAATTACTCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGAMTAATAATTAGGGAAAATTGCCTTATCCCATAACTACCTGCTTTTTTAGTATTATCATAACTTCGACCTTAATTATCTCAATTCCTGTAAATGGTATTGAATAGTTGCGAATTAGCAAAATGTGTAAAATTATAATAATCAAAGTATAATAATCATTTTATAAGTTAACATCTTTTTGATATCTTTCACAGCAACTGAGATAATCAGAGTTGAACTTTATCCATCCGTAATTTTGGGCATCTTTTCCGAATCTAACTTTTTTCTACTTTTTTCTTTTCCAATTCCAAAAAGGATTTGCTTTCTGAATCGCTTCATTTCCGAACACACAGATGTACAGGGCAATAAAATGCATTCGGCCGGTAAGTACAGAGAGATACACTATCCTCACCAGGTGGTCACTTCTTTCCCCTTTTGTCTCCTTATTCAGAATTTCTAGAAGCTTCTTCTTCTTCTTCTTTGTATACTACTTTTCTCTCCACCTATTCCCAATTCCTATTATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTGACCTTTTCCTGAGTC</pcr_primer_p1>
		<pcr_primer_p2>CAAAATTACGGATGGATAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>602</pcr_amplicon_size>
		<canonical_amplicon>GAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTACCTGCTTTTTTAGTATTATCATAACTTCGACCTTAATTATCTCAATTCCTGTAAATGGTATTGAATAGTTGCGAATTAGCAAAATGTGTAAAATTATAATAATCAAAGTATAATAATCATTTTATAAGTTAACATCTTTTTGATATCTTTCACAGCAACTGAGATAATCAGAGTTGAACTTTATCCATCCGTAATTTTG</canonical_amplicon>
		<polymorphic_amplicon>GAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGAMTAATAATTAGGGAAAATTGCCTTATCCCATAACTACCTGCTTTTTTAGTATTATCATAACTTCGACCTTAATTATCTCAATTCCTGTAAATGGTATTGAATAGTTGCGAATTAGCAAAATGTGTAAAATTATAATAATCAAAGTATAATAATCATTTTATAAGTTAACATCTTTTTGATATCTTTCACAGCAACTGAGATAATCAGAGTTGAACTTTATCCATCCGTAATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4553</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>45774</contig_pos>
        <strand></strand>
        <context>caactttgac[C/G]ctaattatcg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGAC</left_flank>
        <right_flank>CTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGTTTTTAGGTTTTCTAGGTCATGACCGAGTTTAACCAAATTTGACCTGTTTCTCAAAATTCCGATTTGTCTAAATTCTATAATAGTTTTTCTAGTTTTTCAACTTCCATTTCTTTTTCAACTGTGATTTATTTTTTAAAAATCTAATTTTGAAAAAATTAAAATTGTTCTCTAAAAACTGAAATTGTTATTGACCGATGTCTAATTCACACTTTCACACTAATTACTCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTACCTGCTTTTTTAGTATTATCATAACTTCGACCTTAATTATCTCAATTCCTGTAAATGGTATTGAATAGTTGCGAATTAGCAAAATGTGTAAAATTATAATAATCAAAGTATAATAATCATTTTATAAGTTAACATCTTTTTGATATCTTTCACAGCAACTGAGATAATCAGAGTTGAACTTTATCCATCCGTAATTTTGGGCATCTTTTCCGAATCTAACTTTTTTCTACTTTTTTCTTTTCCAATTCCAAAAAGGATTTGCTTTCTGAATCGCTTCATTTCCGAACACACAGATGTACAGGGCAATAAAATGCATTCGGCCGGTAAGTACAGAGAGATACACTATCC</canonical>
            <polymorphic>GCGTTTTTAGGTTTTCTAGGTCATGACCGAGTTTAACCAAATTTGACCTGTTTCTCAAAATTCCGATTTGTCTAAATTCTATAATAGTTTTTCTAGTTTTTCAACTTCCATTTCTTTTTCAACTGTGATTTATTTTTTAAAAATCTAATTTTGAAAAAATTAAAATTGTTCTCTAAAAACTGAAATTGTTATTGACCGATGTCTAATTCACACTTTCACACTAATTACTCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACSCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTACCTGCTTTTTTAGTATTATCATAACTTCGACCTTAATTATCTCAATTCCTGTAAATGGTATTGAATAGTTGCGAATTAGCAAAATGTGTAAAATTATAATAATCAAAGTATAATAATCATTTTATAAGTTAACATCTTTTTGATATCTTTCACAGCAACTGAGATAATCAGAGTTGAACTTTATCCATCCGTAATTTTGGGCATCTTTTCCGAATCTAACTTTTTTCTACTTTTTTCTTTTCCAATTCCAAAAAGGATTTGCTTTCTGAATCGCTTCATTTCCGAACACACAGATGTACAGGGCAATAAAATGCATTCGGCCGGTAAGTACAGAGAGATACACTATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTGACCTTTTCCTGAGTC</pcr_primer_p1>
		<pcr_primer_p2>TAGTTATGGGATAAGGCAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>403</pcr_amplicon_size>
		<canonical_amplicon>GAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTA</canonical_amplicon>
		<polymorphic_amplicon>GAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACSCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4554</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>45745</contig_pos>
        <strand></strand>
        <context>cccatarccg[C/T]cttacttttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCG</left_flank>
        <right_flank>CTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGAATTTTTCGGGTTTCTGGGCCATATTGCGTTTTTAGGTTTTCTAGGTCATGACCGAGTTTAACCAAATTTGACCTGTTTCTCAAAATTCCGATTTGTCTAAATTCTATAATAGTTTTTCTAGTTTTTCAACTTCCATTTCTTTTTCAACTGTGATTTATTTTTTAAAAATCTAATTTTGAAAAAATTAAAATTGTTCTCTAAAAACTGAAATTGTTATTGACCGATGTCTAATTCACACTTTCACACTAATTACTCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTACCTGCTTTTTTAGTATTATCATAACTTCGACCTTAATTATCTCAATTCCTGTAAATGGTATTGAATAGTTGCGAATTAGCAAAATGTGTAAAATTATAATAATCAAAGTATAATAATCATTTTATAAGTTAACATCTTTTTGATATCTTTCACAGCAACTGAGATAATCAGAGTTGAACTTTATCCATCCGTAATTTTGGGCATCTTTTCCGAATCTAACTTTTTTCTACTTTTTTCTTTTCCAATTCCAAAAAGGATTTGCTTTCTGAATCGCTTCATTTCCGAACACACAGATGTACAGGGCAATAAAATGCATTCG</canonical>
            <polymorphic>CCGAATTTTTCGGGTTTCTGGGCCATATTGCGTTTTTAGGTTTTCTAGGTCATGACCGAGTTTAACCAAATTTGACCTGTTTCTCAAAATTCCGATTTGTCTAAATTCTATAATAGTTTTTCTAGTTTTTCAACTTCCATTTCTTTTTCAACTGTGATTTATTTTTTAAAAATCTAATTTTGAAAAAATTAAAATTGTTCTCTAAAAACTGAAATTGTTATTGACCGATGTCTAATTCACACTTTCACACTAATTACTCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGYCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTACCTGCTTTTTTAGTATTATCATAACTTCGACCTTAATTATCTCAATTCCTGTAAATGGTATTGAATAGTTGCGAATTAGCAAAATGTGTAAAATTATAATAATCAAAGTATAATAATCATTTTATAAGTTAACATCTTTTTGATATCTTTCACAGCAACTGAGATAATCAGAGTTGAACTTTATCCATCCGTAATTTTGGGCATCTTTTCCGAATCTAACTTTTTTCTACTTTTTTCTTTTCCAATTCCAAAAAGGATTTGCTTTCTGAATCGCTTCATTTCCGAACACACAGATGTACAGGGCAATAAAATGCATTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGTGACCTTTTCCTGAGTC</pcr_primer_p1>
		<pcr_primer_p2>TAGTTATGGGATAAGGCAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>403</pcr_amplicon_size>
		<canonical_amplicon>GAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTA</canonical_amplicon>
		<polymorphic_amplicon>GAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGYCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4555</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>45741</contig_pos>
        <strand></strand>
        <context>tcgtcccata[A/G]ccgycttact</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATA</left_flank>
        <right_flank>CCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCC</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGACCGAATTTTTCGGGTTTCTGGGCCATATTGCGTTTTTAGGTTTTCTAGGTCATGACCGAGTTTAACCAAATTTGACCTGTTTCTCAAAATTCCGATTTGTCTAAATTCTATAATAGTTTTTCTAGTTTTTCAACTTCCATTTCTTTTTCAACTGTGATTTATTTTTTAAAAATCTAATTTTGAAAAAATTAAAATTGTTCTCTAAAAACTGAAATTGTTATTGACCGATGTCTAATTCACACTTTCACACTAATTACTCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTACCTGCTTTTTTAGTATTATCATAACTTCGACCTTAATTATCTCAATTCCTGTAAATGGTATTGAATAGTTGCGAATTAGCAAAATGTGTAAAATTATAATAATCAAAGTATAATAATCATTTTATAAGTTAACATCTTTTTGATATCTTTCACAGCAACTGAGATAATCAGAGTTGAACTTTATCCATCCGTAATTTTGGGCATCTTTTCCGAATCTAACTTTTTTCTACTTTTTTCTTTTCCAATTCCAAAAAGGATTTGCTTTCTGAATCGCTTCATTTCCGAACACACAGATGTACAGGGCAATAAAATGCA</canonical>
            <polymorphic>ATGACCGAATTTTTCGGGTTTCTGGGCCATATTGCGTTTTTAGGTTTTCTAGGTCATGACCGAGTTTAACCAAATTTGACCTGTTTCTCAAAATTCCGATTTGTCTAAATTCTATAATAGTTTTTCTAGTTTTTCAACTTCCATTTCTTTTTCAACTGTGATTTATTTTTTAAAAATCTAATTTTGAAAAAATTAAAATTGTTCTCTAAAAACTGAAATTGTTATTGACCGATGTCTAATTCACACTTTCACACTAATTACTCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATARCCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTACCTGCTTTTTTAGTATTATCATAACTTCGACCTTAATTATCTCAATTCCTGTAAATGGTATTGAATAGTTGCGAATTAGCAAAATGTGTAAAATTATAATAATCAAAGTATAATAATCATTTTATAAGTTAACATCTTTTTGATATCTTTCACAGCAACTGAGATAATCAGAGTTGAACTTTATCCATCCGTAATTTTGGGCATCTTTTCCGAATCTAACTTTTTTCTACTTTTTTCTTTTCCAATTCCAAAAAGGATTTGCTTTCTGAATCGCTTCATTTCCGAACACACAGATGTACAGGGCAATAAAATGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTGACCTTTTCCTGAGTC</pcr_primer_p1>
		<pcr_primer_p2>TAGTTATGGGATAAGGCAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>403</pcr_amplicon_size>
		<canonical_amplicon>GAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTA</canonical_amplicon>
		<polymorphic_amplicon>GAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATARCCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4556</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>112906</contig_pos>
        <strand>+</strand>
        <context>AGCGTATTTT[C/T]STCTTTTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTT</left_flank>
        <right_flank>GTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTTCAAAAATTTCAGAAAATTCTGCAAAATTCAAATTAGAAAATTCCAGGATTTCCAGAAAATTTCGTAAAATTAAAAGTTTACAATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTTTAGAAAATCGGAATTTTCAAAAAATTCAAAAAATCGATATTTCAGGACTGCAAATGCTTCATCGCAGTTATCCATATGCAAAAACTAAAAGAGAATCTTTTCTCGAATTTTCAAATAATCAATAATCGAAAAATCAAAGAAATTCGAGATGTCTCTGGATTCAGCCAACGAGATTTAGAATCAGAGCTACAGTATCTGGGTCTCACAACGACGTTTCCGGAAATTCGAAATTTCGCGGAATTGGTGTATTCTGA</canonical>
            <polymorphic>AAACTTCAAAAATTTCAGAAAATTCTGCAAAATTCAAATTAGAAAATTCCAGGATTTCCAGAAAATTTCGTAAAATTAAAAGTTTACAATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTYGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTTTAGAAAATCGGAATTTTCAAAAAATTCAAAAAATCGATATTTCAGGACTGCAAATGCTTCATCGCAGTTATCCATATGCAAAAACTAAAAGAGAATCTTTTCTCGAATTTTCAAATAATCAATAATCGAAAAATCAAAGAAATTCGAGATGTCTCTGGATTCAGCCAACGAGATTTAGAATCAGAGCTACAGTATCTGGGTCTCACAACGACGTTTCCGGAAATTCGAAATTTCGCGGAATTGGTGTATTCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATCCAGACAGTTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>ATGTAGACGGCTTTGTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>GAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACAT</canonical_amplicon>
		<polymorphic_amplicon>GAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTYGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4557</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>112907</contig_pos>
        <strand>+</strand>
        <context>GCGTATTTTY[C/G]TCTTTTTTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTC</left_flank>
        <right_flank>TCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTTCAAAAATTTCAGAAAATTCTGCAAAATTCAAATTAGAAAATTCCAGGATTTCCAGAAAATTTCGTAAAATTAAAAGTTTACAATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTTTAGAAAATCGGAATTTTCAAAAAATTCAAAAAATCGATATTTCAGGACTGCAAATGCTTCATCGCAGTTATCCATATGCAAAAACTAAAAGAGAATCTTTTCTCGAATTTTCAAATAATCAATAATCGAAAAATCAAAGAAATTCGAGATGTCTCTGGATTCAGCCAACGAGATTTAGAATCAGAGCTACAGTATCTGGGTCTCACAACGACGTTTCCGGAAATTCGAAATTTCGCGGAATTGGTGTATTCTGAA</canonical>
            <polymorphic>AACTTCAAAAATTTCAGAAAATTCTGCAAAATTCAAATTAGAAAATTCCAGGATTTCCAGAAAATTTCGTAAAATTAAAAGTTTACAATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCSTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTTTAGAAAATCGGAATTTTCAAAAAATTCAAAAAATCGATATTTCAGGACTGCAAATGCTTCATCGCAGTTATCCATATGCAAAAACTAAAAGAGAATCTTTTCTCGAATTTTCAAATAATCAATAATCGAAAAATCAAAGAAATTCGAGATGTCTCTGGATTCAGCCAACGAGATTTAGAATCAGAGCTACAGTATCTGGGTCTCACAACGACGTTTCCGGAAATTCGAAATTTCGCGGAATTGGTGTATTCTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATCCAGACAGTTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>ATGTAGACGGCTTTGTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>GAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACAT</canonical_amplicon>
		<polymorphic_amplicon>GAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCSTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4558</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>112976</contig_pos>
        <strand>+</strand>
        <context>TCCAAGGACC[C/T]AGCCGAGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACC</left_flank>
        <right_flank>AGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAATTAAAAGTTTACAATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTTTAGAAAATCGGAATTTTCAAAAAATTCAAAAAATCGATATTTCAGGACTGCAAATGCTTCATCGCAGTTATCCATATGCAAAAACTAAAAGAGAATCTTTTCTCGAATTTTCAAATAATCAATAATCGAAAAATCAAAGAAATTCGAGATGTCTCTGGATTCAGCCAACGAGATTTAGAATCAGAGCTACAGTATCTGGGTCTCACAACGACGTTTCCGGAAATTCGAAATTTCGCGGAATTGGTGTATTCTGAAGTGGATAGAAATAAAAGGGAGCGAATTCTGAGAACGTGCGATATGTTCGACGCCGTTGAGCAGTGCCAA</canonical>
            <polymorphic>TAAAATTAAAAGTTTACAATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCYAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTTTAGAAAATCGGAATTTTCAAAAAATTCAAAAAATCGATATTTCAGGACTGCAAATGCTTCATCGCAGTTATCCATATGCAAAAACTAAAAGAGAATCTTTTCTCGAATTTTCAAATAATCAATAATCGAAAAATCAAAGAAATTCGAGATGTCTCTGGATTCAGCCAACGAGATTTAGAATCAGAGCTACAGTATCTGGGTCTCACAACGACGTTTCCGGAAATTCGAAATTTCGCGGAATTGGTGTATTCTGAAGTGGATAGAAATAAAAGGGAGCGAATTCTGAGAACGTGCGATATGTTCGACGCCGTTGAGCAGTGCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAGTTCTCAATAGAGCGTATTT</pcr_primer_p1>
		<pcr_primer_p2>AATCACTATGAAAAACTTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATT</canonical_amplicon>
		<polymorphic_amplicon>CAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCYAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4559</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>113091</contig_pos>
        <strand>+</strand>
        <context>AATTTTGAAA[C/T]TGCTCACCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAA</left_flank>
        <right_flank>TGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTTTAGAAAATCGGAATTTTCAAAAAATTCAAAAAATCGATATTTCAGGACTGCAAATGCTTCATCGCAGTTATCCATATGCAAAAACTAAAAGAGAATCTTTTCTCGAATTTTCAAATAATCAATAATCGAAAAATCAAAGAAATTCGAGATGTCTCTGGATTCAGCCAACGAGATTTAGAATCAGAGCTACAGTATCTGGGTCTCACAACGACGTTTCCGGAAATTCGAAATTTCGCGGAATTGGTGTATTCTGAAGTGGATAGAAATAAAAGGGAGCGAATTCTGAGAACGTGCGATATGTTCGACGCCGTTGAGCAGTGCCAAATTATCTGCTTTTTGAATATGTTCCCGGAAGTACGGATTATTGATTTTTTCCTTTTTTTTTGGGAGAAAAACGAAGAAAAATAGACAAAAATAGCGATTTTTAAGCCTAAAAACG</canonical>
            <polymorphic>AAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAAYTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTTTAGAAAATCGGAATTTTCAAAAAATTCAAAAAATCGATATTTCAGGACTGCAAATGCTTCATCGCAGTTATCCATATGCAAAAACTAAAAGAGAATCTTTTCTCGAATTTTCAAATAATCAATAATCGAAAAATCAAAGAAATTCGAGATGTCTCTGGATTCAGCCAACGAGATTTAGAATCAGAGCTACAGTATCTGGGTCTCACAACGACGTTTCCGGAAATTCGAAATTTCGCGGAATTGGTGTATTCTGAAGTGGATAGAAATAAAAGGGAGCGAATTCTGAGAACGTGCGATATGTTCGACGCCGTTGAGCAGTGCCAAATTATCTGCTTTTTGAATATGTTCCCGGAAGTACGGATTATTGATTTTTTCCTTTTTTTTTGGGAGAAAAACGAAGAAAAATAGACAAAAATAGCGATTTTTAAGCCTAAAAACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>150 116 83 81 52 45 44 40 35 34 25 21 19 18 14 14 12 11 11 11 10 10 10 10 9 9 9 9 9 8 8 8 8 8 8 7 7 6 6 5</canonical_bands>
                <polymorphic_bands>150 116 83 81 52 45 44 40 35 34 25 21 20 19 18 14 14 11 11 11 10 10 10 10 9 9 9 9 9 8 8 8 8 8 7 7 6 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATACTGTACATTCTAATCCAAGA</pcr_primer_p1>
		<pcr_primer_p2>CATATGGATAACTGCGATGAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTTTAGAAAATCGGAATTTTCAAAAAATTCAAAAAATCGATATTTCAGGACTGCAAATGCTTCATCGCAGTTATCCATATG</canonical_amplicon>
		<polymorphic_amplicon>GAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAAYTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTTTAGAAAATCGGAATTTTCAAAAAATTCAAAAAATCGATATTTCAGGACTGCAAATGCTTCATCGCAGTTATCCATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4560</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>116640</contig_pos>
        <strand></strand>
        <context>TTTACTGYYT[A/T]WTAATATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAATTTTACTGTTT</left_flank>
        <right_flank>TTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATCTGAAATTGTCTAATTTTTGAAAATCTGCGTTTTTGAAATCTGGAAAATACAGAATTTTTTTACTTTTTTTCCCAATAAAAACTGGAAATCTTCAGGTTTTCTTTAGGAAAAATAATGGAAAAAAGCGGTAAAAATTTTAAGTTTTGACTTTTTTTTTTTGAAAATTTCATAGAAATTTTATAGATTTTGAATCAATTTTTTGAATTTTCGGCTTTTTTTCAGAACTCGCCAACCTTCTACTATAGCTTGAAGGATAGCGATAAATACATTGCCAAATCGGATCTTTTTGTGATTCTTCAGAATATCATGTTTAATATTTCGGACACCTCTGATTTCTGTTTGCTTTCAATTTTTATTGGTCATCTCAAGCTCCAAGAGCAACGAATTGGCTCTAATTTCGAGTTTGTCAAATGCGATGAATCGATTTTAGAGGAATTTTACAACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAATTTTACTGTTTATTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCTTTCATTGAGAAAAACGGCATCGAAAAATCAAAGTGGGAATCGGTGGCCAGGTGTGAGTTTTCTTGGCCAACTGCCGGTAAAAGCGTGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTTTCTGATTTTTGNNNNNNNNNNTCAATTATTTTTCGAAAGAAAACCTGAAGATTTCCAGTTTTTATTGGAAAAAAAGTAAAAAAATTCTGTATTTTCCAGATTTCAAAAACGCAGATTTTCAAAAATTAGACAATTTCAGATTTTTTTAGAAAAAATTCGAAAAATGCGATTTTTTTCTTTTTTTTTCGGAAAAAATTTTAAATTTTCAGATTTTCATGGAAAAAATGCAAAATTTCAGATTTTTTTTCCAAGTTTTTTTTCGAAAAAATTC</canonical>
            <polymorphic>AAATCTGAAATTGTCTAATTTTTGAAAATCTGCGTTTTTGAAATCTGGAAAATACAGAATTTTTTTACTTTTTTTCCCAATAAAAACTGGAAATCTTCAGGTTTTCTTTAGGAAAAATAATGGAAAAAAGCGGTAAAAATTTTAAGTTTTGACTTTTTTTTTTTGAAAATTTCATAGAAATTTTATAGATTTTGAATCAATTTTTTGAATTTTCGGCTTTTTTTCAGAACTCGCCAACCTTCTACTATAGCTTGAAGGATAGCGATAAATACATTGCCAAATCGGATCTTTTTGTGATTCTTCAGAATATCATGTTTAATATTTCGGACACCTCTGATTTCTGTTTGCTTTCAATTTTTATTGGTCATCTCAAGCTCCAAGAGCAACGAATTGGCTCTAATTTCGAGTTTGTCAAATGCGATGAATCGATTTTAGAGGAATTTTACAACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAATTTTACTGTTTWTTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCTTTCATTGAGAAAAACGGCATCGAAAAATCAAAGTGGGAATCGGTGGCCAGGTGTGAGTTTTCTTGGCCAACTGCCGGTAAAAGCGTGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTTTCTGATTTTTGNNNNNNNNNNTCAATTATTTTTCGAAAGAAAACCTGAAGATTTCCAGTTTTTATTGGAAAAAAAGTAAAAAAATTCTGTATTTTCCAGATTTCAAAAACGCAGATTTTCAAAAATTAGACAATTTCAGATTTTTTTAGAAAAAATTCGAAAAATGCGATTTTTTTCTTTTTTTTTCGGAAAAAATTTTAAATTTTCAGATTTTCATGGAAAAAATGCAAAATTTCAGATTTTTTTTCCAAGTTTTTTTTCGAAAAAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGAGGAATTTTACAACTCAATG</pcr_primer_p1>
		<pcr_primer_p2>GGAAATCTTCAGGTTTTCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>354</pcr_amplicon_size>
		<canonical_amplicon>TTAGAGGAATTTTACAACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAATTTTACTGTTTATTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCTTTCATTGAGAAAAACGGCATCGAAAAATCAAAGTGGGAATCGGTGGCCAGGTGTGAGTTTTCTTGGCCAACTGCCGGTAAAAGCGTGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTTTCTGATTTTTGNNNNNNNNNNTCAATTATTTTTCGAAAGAAAACCTGAAGATTTCC</canonical_amplicon>
		<polymorphic_amplicon>TTAGAGGAATTTTACAACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAATTTTACTGTTTWTTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCTTTCATTGAGAAAAACGGCATCGAAAAATCAAAGTGGGAATCGGTGGCCAGGTGTGAGTTTTCTTGGCCAACTGCCGGTAAAAGCGTGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTTTCTGATTTTTGNNNNNNNNNNTCAATTATTTTTCGAAAGAAAACCTGAAGATTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4561</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>116637</contig_pos>
        <strand></strand>
        <context>AATTTTACTG[T/C]YTWWTAATAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAATTTTACTG</left_flank>
        <right_flank>TTATTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAATCTGAAATTGTCTAATTTTTGAAAATCTGCGTTTTTGAAATCTGGAAAATACAGAATTTTTTTACTTTTTTTCCCAATAAAAACTGGAAATCTTCAGGTTTTCTTTAGGAAAAATAATGGAAAAAAGCGGTAAAAATTTTAAGTTTTGACTTTTTTTTTTTGAAAATTTCATAGAAATTTTATAGATTTTGAATCAATTTTTTGAATTTTCGGCTTTTTTTCAGAACTCGCCAACCTTCTACTATAGCTTGAAGGATAGCGATAAATACATTGCCAAATCGGATCTTTTTGTGATTCTTCAGAATATCATGTTTAATATTTCGGACACCTCTGATTTCTGTTTGCTTTCAATTTTTATTGGTCATCTCAAGCTCCAAGAGCAACGAATTGGCTCTAATTTCGAGTTTGTCAAATGCGATGAATCGATTTTAGAGGAATTTTACAACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAATTTTACTGTTTATTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCTTTCATTGAGAAAAACGGCATCGAAAAATCAAAGTGGGAATCGGTGGCCAGGTGTGAGTTTTCTTGGCCAACTGCCGGTAAAAGCGTGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTTTCTGATTTTTGNNNNNNNNNNTCAATTATTTTTCGAAAGAAAACCTGAAGATTTCCAGTTTTTATTGGAAAAAAAGTAAAAAAATTCTGTATTTTCCAGATTTCAAAAACGCAGATTTTCAAAAATTAGACAATTTCAGATTTTTTTAGAAAAAATTCGAAAAATGCGATTTTTTTCTTTTTTTTTCGGAAAAAATTTTAAATTTTCAGATTTTCATGGAAAAAATGCAAAATTTCAGATTTTTTTTCCAAGTTTTTTTTCGAAAAAA</canonical>
            <polymorphic>AAAAAATCTGAAATTGTCTAATTTTTGAAAATCTGCGTTTTTGAAATCTGGAAAATACAGAATTTTTTTACTTTTTTTCCCAATAAAAACTGGAAATCTTCAGGTTTTCTTTAGGAAAAATAATGGAAAAAAGCGGTAAAAATTTTAAGTTTTGACTTTTTTTTTTTGAAAATTTCATAGAAATTTTATAGATTTTGAATCAATTTTTTGAATTTTCGGCTTTTTTTCAGAACTCGCCAACCTTCTACTATAGCTTGAAGGATAGCGATAAATACATTGCCAAATCGGATCTTTTTGTGATTCTTCAGAATATCATGTTTAATATTTCGGACACCTCTGATTTCTGTTTGCTTTCAATTTTTATTGGTCATCTCAAGCTCCAAGAGCAACGAATTGGCTCTAATTTCGAGTTTGTCAAATGCGATGAATCGATTTTAGAGGAATTTTACAACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAATTTTACTGYTTATTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCTTTCATTGAGAAAAACGGCATCGAAAAATCAAAGTGGGAATCGGTGGCCAGGTGTGAGTTTTCTTGGCCAACTGCCGGTAAAAGCGTGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTTTCTGATTTTTGNNNNNNNNNNTCAATTATTTTTCGAAAGAAAACCTGAAGATTTCCAGTTTTTATTGGAAAAAAAGTAAAAAAATTCTGTATTTTCCAGATTTCAAAAACGCAGATTTTCAAAAATTAGACAATTTCAGATTTTTTTAGAAAAAATTCGAAAAATGCGATTTTTTTCTTTTTTTTTCGGAAAAAATTTTAAATTTTCAGATTTTCATGGAAAAAATGCAAAATTTCAGATTTTTTTTCCAAGTTTTTTTTCGAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>487 472 30 11</canonical_bands>
                <polymorphic_bands>487 472 41</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGAGGAATTTTACAACTCAATG</pcr_primer_p1>
		<pcr_primer_p2>GGAAATCTTCAGGTTTTCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>354</pcr_amplicon_size>
		<canonical_amplicon>TTAGAGGAATTTTACAACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAATTTTACTGTTTATTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCTTTCATTGAGAAAAACGGCATCGAAAAATCAAAGTGGGAATCGGTGGCCAGGTGTGAGTTTTCTTGGCCAACTGCCGGTAAAAGCGTGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTTTCTGATTTTTGNNNNNNNNNNTCAATTATTTTTCGAAAGAAAACCTGAAGATTTCC</canonical_amplicon>
		<polymorphic_amplicon>TTAGAGGAATTTTACAACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAATTTTACTGYTTATTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCTTTCATTGAGAAAAACGGCATCGAAAAATCAAAGTGGGAATCGGTGGCCAGGTGTGAGTTTTCTTGGCCAACTGCCGGTAAAAGCGTGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTTTCTGATTTTTGNNNNNNNNNNTCAATTATTTTTCGAAAGAAAACCTGAAGATTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4562</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>116517</contig_pos>
        <strand>+</strand>
        <context>ATCTCAAGCT[C/T]CAAGAGCAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACACCTCTGATTTCTGTTTGCTTTCAATTTTTATTGGTCATCTCAAGCT</left_flank>
        <right_flank>CAAGAGCAACGAATTGGCTCTAATTTCGAGTTTGTCAAATGCGATGAATC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCGAAAAAAAACTTGGAAAAAAAATCTGAAATTTTGCATTTTTTCCATGAAAATCTGAAAATTTAAAATTTTTTCCGAAAAAAAAAGAAAAAAATCGCATTTTTCGAATTTTTTCTAAAAAAATCTGAAATTGTCTAATTTTTGAAAATCTGCGTTTTTGAAATCTGGAAAATACAGAATTTTTTTACTTTTTTTCCCAATAAAAACTGGAAATCTTCAGGTTTTCTTTAGGAAAAATAATGGAAAAAAGCGGTAAAAATTTTAAGTTTTGACTTTTTTTTTTTGAAAATTTCATAGAAATTTTATAGATTTTGAATCAATTTTTTGAATTTTCGGCTTTTTTTCAGAACTCGCCAACCTTCTACTATAGCTTGAAGGATAGCGATAAATACATTGCCAAATCGGATCTTTTTGTGATTCTTCAGAATATCATGTTTAATATTTCGGACACCTCTGATTTCTGTTTGCTTTCAATTTTTATTGGTCATCTCAAGCTCCAAGAGCAACGAATTGGCTCTAATTTCGAGTTTGTCAAATGCGATGAATCGATTTTAGAGGAATTTTACAACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAATTTTACTGTTTATTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCTTTCATTGAGAAAAACGGCATCGAAAAATCAAAGTGGGAATCGGTGGCCAGGTGTGAGTTTTCTTGGCCAACTGCCGGTAAAAGCGTGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTTTCTGATTTTTGNNNNNNNNNNTCAATTATTTTTCGAAAGAAAACCTGAAGATTTCCAGTTTTTATTGGAAAAAAAGTAAAAAAATTCTGTATTTTCCAGATTTCAAAAACGCAGATTTTCAAAAATTAGACAATTTCAGATTTTTTTA</canonical>
            <polymorphic>TTTTCGAAAAAAAACTTGGAAAAAAAATCTGAAATTTTGCATTTTTTCCATGAAAATCTGAAAATTTAAAATTTTTTCCGAAAAAAAAAGAAAAAAATCGCATTTTTCGAATTTTTTCTAAAAAAATCTGAAATTGTCTAATTTTTGAAAATCTGCGTTTTTGAAATCTGGAAAATACAGAATTTTTTTACTTTTTTTCCCAATAAAAACTGGAAATCTTCAGGTTTTCTTTAGGAAAAATAATGGAAAAAAGCGGTAAAAATTTTAAGTTTTGACTTTTTTTTTTTGAAAATTTCATAGAAATTTTATAGATTTTGAATCAATTTTTTGAATTTTCGGCTTTTTTTCAGAACTCGCCAACCTTCTACTATAGCTTGAAGGATAGCGATAAATACATTGCCAAATCGGATCTTTTTGTGATTCTTCAGAATATCATGTTTAATATTTCGGACACCTCTGATTTCTGTTTGCTTTCAATTTTTATTGGTCATCTCAAGCTYCAAGAGCAACGAATTGGCTCTAATTTCGAGTTTGTCAAATGCGATGAATCGATTTTAGAGGAATTTTACAACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAATTTTACTGTTTATTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCTTTCATTGAGAAAAACGGCATCGAAAAATCAAAGTGGGAATCGGTGGCCAGGTGTGAGTTTTCTTGGCCAACTGCCGGTAAAAGCGTGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTTTCTGATTTTTGNNNNNNNNNNTCAATTATTTTTCGAAAGAAAACCTGAAGATTTCCAGTTTTTATTGGAAAAAAAGTAAAAAAATTCTGTATTTTCCAGATTTCAAAAACGCAGATTTTCAAAAATTAGACAATTTCAGATTTTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATAGCTTGAAGGATAGCGATAA</pcr_primer_p1>
		<pcr_primer_p2>TTACAGTAATTTTGTGCCTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TATAGCTTGAAGGATAGCGATAAATACATTGCCAAATCGGATCTTTTTGTGATTCTTCAGAATATCATGTTTAATATTTCGGACACCTCTGATTTCTGTTTGCTTTCAATTTTTATTGGTCATCTCAAGCTCCAAGAGCAACGAATTGGCTCTAATTTCGAGTTTGTCAAATGCGATGAATCGATTTTAGAGGAATTTTACAACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAA</canonical_amplicon>
		<polymorphic_amplicon>TATAGCTTGAAGGATAGCGATAAATACATTGCCAAATCGGATCTTTTTGTGATTCTTCAGAATATCATGTTTAATATTTCGGACACCTCTGATTTCTGTTTGCTTTCAATTTTTATTGGTCATCTCAAGCTYCAAGAGCAACGAATTGGCTCTAATTTCGAGTTTGTCAAATGCGATGAATCGATTTTAGAGGAATTTTACAACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4563</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>116467</contig_pos>
        <strand>+</strand>
        <context>TAATATTTCG[A/G]ACACCTCTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAAATCGGATCTTTTTGTGATTCTTCAGAATATCATGTTTAATATTTCG</left_flank>
        <right_flank>ACACCTCTGATTTCTGTTTGCTTTCAATTTTTATTGGTCATCTCAAGCTC</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCCGAAATTTTGGAATTTTTTTCCAAAAAAAATCTGAAAGTTTTGAATTTTTTCGAAAAAAAACTTGGAAAAAAAATCTGAAATTTTGCATTTTTTCCATGAAAATCTGAAAATTTAAAATTTTTTCCGAAAAAAAAAGAAAAAAATCGCATTTTTCGAATTTTTTCTAAAAAAATCTGAAATTGTCTAATTTTTGAAAATCTGCGTTTTTGAAATCTGGAAAATACAGAATTTTTTTACTTTTTTTCCCAATAAAAACTGGAAATCTTCAGGTTTTCTTTAGGAAAAATAATGGAAAAAAGCGGTAAAAATTTTAAGTTTTGACTTTTTTTTTTTGAAAATTTCATAGAAATTTTATAGATTTTGAATCAATTTTTTGAATTTTCGGCTTTTTTTCAGAACTCGCCAACCTTCTACTATAGCTTGAAGGATAGCGATAAATACATTGCCAAATCGGATCTTTTTGTGATTCTTCAGAATATCATGTTTAATATTTCGGACACCTCTGATTTCTGTTTGCTTTCAATTTTTATTGGTCATCTCAAGCTCCAAGAGCAACGAATTGGCTCTAATTTCGAGTTTGTCAAATGCGATGAATCGATTTTAGAGGAATTTTACAACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAATTTTACTGTTTATTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCTTTCATTGAGAAAAACGGCATCGAAAAATCAAAGTGGGAATCGGTGGCCAGGTGTGAGTTTTCTTGGCCAACTGCCGGTAAAAGCGTGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTTTCTGATTTTTGNNNNNNNNNNTCAATTATTTTTCGAAAGAAAACCTGAAGATTTCCAGTTTTTATTGGAAAAAAAGTAAAAAAATTCTGTATTTTCCA</canonical>
            <polymorphic>ACCCGAAATTTTGGAATTTTTTTCCAAAAAAAATCTGAAAGTTTTGAATTTTTTCGAAAAAAAACTTGGAAAAAAAATCTGAAATTTTGCATTTTTTCCATGAAAATCTGAAAATTTAAAATTTTTTCCGAAAAAAAAAGAAAAAAATCGCATTTTTCGAATTTTTTCTAAAAAAATCTGAAATTGTCTAATTTTTGAAAATCTGCGTTTTTGAAATCTGGAAAATACAGAATTTTTTTACTTTTTTTCCCAATAAAAACTGGAAATCTTCAGGTTTTCTTTAGGAAAAATAATGGAAAAAAGCGGTAAAAATTTTAAGTTTTGACTTTTTTTTTTTGAAAATTTCATAGAAATTTTATAGATTTTGAATCAATTTTTTGAATTTTCGGCTTTTTTTCAGAACTCGCCAACCTTCTACTATAGCTTGAAGGATAGCGATAAATACATTGCCAAATCGGATCTTTTTGTGATTCTTCAGAATATCATGTTTAATATTTCGRACACCTCTGATTTCTGTTTGCTTTCAATTTTTATTGGTCATCTCAAGCTCCAAGAGCAACGAATTGGCTCTAATTTCGAGTTTGTCAAATGCGATGAATCGATTTTAGAGGAATTTTACAACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAATTTTACTGTTTATTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCTTTCATTGAGAAAAACGGCATCGAAAAATCAAAGTGGGAATCGGTGGCCAGGTGTGAGTTTTCTTGGCCAACTGCCGGTAAAAGCGTGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTTTCTGATTTTTGNNNNNNNNNNTCAATTATTTTTCGAAAGAAAACCTGAAGATTTCCAGTTTTTATTGGAAAAAAAGTAAAAAAATTCTGTATTTTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>397 220 95 58 50 44 36 29 22 20 20 9</canonical_bands>
                <polymorphic_bands>397 220 95 58 50 44 36 31 29 20 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATAGCTTGAAGGATAGCGATAA</pcr_primer_p1>
		<pcr_primer_p2>TTACAGTAATTTTGTGCCTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TATAGCTTGAAGGATAGCGATAAATACATTGCCAAATCGGATCTTTTTGTGATTCTTCAGAATATCATGTTTAATATTTCGGACACCTCTGATTTCTGTTTGCTTTCAATTTTTATTGGTCATCTCAAGCTCCAAGAGCAACGAATTGGCTCTAATTTCGAGTTTGTCAAATGCGATGAATCGATTTTAGAGGAATTTTACAACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAA</canonical_amplicon>
		<polymorphic_amplicon>TATAGCTTGAAGGATAGCGATAAATACATTGCCAAATCGGATCTTTTTGTGATTCTTCAGAATATCATGTTTAATATTTCGRACACCTCTGATTTCTGTTTGCTTTCAATTTTTATTGGTCATCTCAAGCTCCAAGAGCAACGAATTGGCTCTAATTTCGAGTTTGTCAAATGCGATGAATCGATTTTAGAGGAATTTTACAACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4564</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>116356</contig_pos>
        <strand></strand>
        <context>TGAATTTTCG[G/A]CTTTTTTTRA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAATTTCATAGAAATTTTATAGATTTTGAATCAATTTTTTGAATTTTCG</left_flank>
        <right_flank>CTTTTTTTCAGAACTCGCCAACCTTCTACTATAGCTTGAAGGATAGCGAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTAATCTGAAAATGCTGCATTTTTTCCAAAAAAATATGAAATTGTTTGAATGTTTTTTCACAAAAAATTGAAAAATACTCAAAATTTTCACATATTTTTTGAAAAAAACCCGAAATTTTGGAATTTTTTTCCAAAAAAAATCTGAAAGTTTTGAATTTTTTCGAAAAAAAACTTGGAAAAAAAATCTGAAATTTTGCATTTTTTCCATGAAAATCTGAAAATTTAAAATTTTTTCCGAAAAAAAAAGAAAAAAATCGCATTTTTCGAATTTTTTCTAAAAAAATCTGAAATTGTCTAATTTTTGAAAATCTGCGTTTTTGAAATCTGGAAAATACAGAATTTTTTTACTTTTTTTCCCAATAAAAACTGGAAATCTTCAGGTTTTCTTTAGGAAAAATAATGGAAAAAAGCGGTAAAAATTTTAAGTTTTGACTTTTTTTTTTTGAAAATTTCATAGAAATTTTATAGATTTTGAATCAATTTTTTGAATTTTCGGCTTTTTTTCAGAACTCGCCAACCTTCTACTATAGCTTGAAGGATAGCGATAAATACATTGCCAAATCGGATCTTTTTGTGATTCTTCAGAATATCATGTTTAATATTTCGGACACCTCTGATTTCTGTTTGCTTTCAATTTTTATTGGTCATCTCAAGCTCCAAGAGCAACGAATTGGCTCTAATTTCGAGTTTGTCAAATGCGATGAATCGATTTTAGAGGAATTTTACAACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAATTTTACTGTTTATTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCTTTCATTGAGAAAAACGGCATCGAAAAATCAAAGTGGGAATCGGTGGCCAGGTGTGAGTTTTCTTGGCCAACTGCCGGTAAAAGCGTGCGAAATTCGAATTTTTATTGAT</canonical>
            <polymorphic>TTTTTTAATCTGAAAATGCTGCATTTTTTCCAAAAAAATATGAAATTGTTTGAATGTTTTTTCACAAAAAATTGAAAAATACTCAAAATTTTCACATATTTTTTGAAAAAAACCCGAAATTTTGGAATTTTTTTCCAAAAAAAATCTGAAAGTTTTGAATTTTTTCGAAAAAAAACTTGGAAAAAAAATCTGAAATTTTGCATTTTTTCCATGAAAATCTGAAAATTTAAAATTTTTTCCGAAAAAAAAAGAAAAAAATCGCATTTTTCGAATTTTTTCTAAAAAAATCTGAAATTGTCTAATTTTTGAAAATCTGCGTTTTTGAAATCTGGAAAATACAGAATTTTTTTACTTTTTTTCCCAATAAAAACTGGAAATCTTCAGGTTTTCTTTAGGAAAAATAATGGAAAAAAGCGGTAAAAATTTTAAGTTTTGACTTTTTTTTTTTGAAAATTTCATAGAAATTTTATAGATTTTGAATCAATTTTTTGAATTTTCGRCTTTTTTTCAGAACTCGCCAACCTTCTACTATAGCTTGAAGGATAGCGATAAATACATTGCCAAATCGGATCTTTTTGTGATTCTTCAGAATATCATGTTTAATATTTCGGACACCTCTGATTTCTGTTTGCTTTCAATTTTTATTGGTCATCTCAAGCTCCAAGAGCAACGAATTGGCTCTAATTTCGAGTTTGTCAAATGCGATGAATCGATTTTAGAGGAATTTTACAACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAATTTTACTGTTTATTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCTTTCATTGAGAAAAACGGCATCGAAAAATCAAAGTGGGAATCGGTGGCCAGGTGTGAGTTTTCTTGGCCAACTGCCGGTAAAAGCGTGCGAAATTCGAATTTTTATTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>500 259 124 43 34 20 20</canonical_bands>
                <polymorphic_bands>534 259 124 43 20 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGAAATCTGGAAAATACAG</pcr_primer_p1>
		<pcr_primer_p2>GCAATGTATTTATCGCTATCCT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGAAATCTGGAAAATACAGAATTTTTTTACTTTTTTTCCCAATAAAAACTGGAAATCTTCAGGTTTTCTTTAGGAAAAATAATGGAAAAAAGCGGTAAAAATTTTAAGTTTTGACTTTTTTTTTTTGAAAATTTCATAGAAATTTTATAGATTTTGAATCAATTTTTTGAATTTTCGGCTTTTTTTCAGAACTCGCCAACCTTCTACTATAGCTTGAAGGATAGCGATAAATACATTGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGAAATCTGGAAAATACAGAATTTTTTTACTTTTTTTCCCAATAAAAACTGGAAATCTTCAGGTTTTCTTTAGGAAAAATAATGGAAAAAAGCGGTAAAAATTTTAAGTTTTGACTTTTTTTTTTTGAAAATTTCATAGAAATTTTATAGATTTTGAATCAATTTTTTGAATTTTCGRCTTTTTTTCAGAACTCGCCAACCTTCTACTATAGCTTGAAGGATAGCGATAAATACATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4565</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>116334</contig_pos>
        <strand></strand>
        <context>TATAGATTTT[G/C]AATCAATTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AAGTTTTGACTTTTTTTTTTTGAAAATTTCATAGAAATTTTATAGATTTT</left_flank>
        <right_flank>AATCAATTTTTTGAATTTTCGGCTTTTTTTCAGAACTCGCCAACCTTCTA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTTTTCCAAAAAAAATTTTTTTTTAATCTGAAAATGCTGCATTTTTTCCAAAAAAATATGAAATTGTTTGAATGTTTTTTCACAAAAAATTGAAAAATACTCAAAATTTTCACATATTTTTTGAAAAAAACCCGAAATTTTGGAATTTTTTTCCAAAAAAAATCTGAAAGTTTTGAATTTTTTCGAAAAAAAACTTGGAAAAAAAATCTGAAATTTTGCATTTTTTCCATGAAAATCTGAAAATTTAAAATTTTTTCCGAAAAAAAAAGAAAAAAATCGCATTTTTCGAATTTTTTCTAAAAAAATCTGAAATTGTCTAATTTTTGAAAATCTGCGTTTTTGAAATCTGGAAAATACAGAATTTTTTTACTTTTTTTCCCAATAAAAACTGGAAATCTTCAGGTTTTCTTTAGGAAAAATAATGGAAAAAAGCGGTAAAAATTTTAAGTTTTGACTTTTTTTTTTTGAAAATTTCATAGAAATTTTATAGATTTTGAATCAATTTTTTGAATTTTCGGCTTTTTTTCAGAACTCGCCAACCTTCTACTATAGCTTGAAGGATAGCGATAAATACATTGCCAAATCGGATCTTTTTGTGATTCTTCAGAATATCATGTTTAATATTTCGGACACCTCTGATTTCTGTTTGCTTTCAATTTTTATTGGTCATCTCAAGCTCCAAGAGCAACGAATTGGCTCTAATTTCGAGTTTGTCAAATGCGATGAATCGATTTTAGAGGAATTTTACAACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAATTTTACTGTTTATTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCTTTCATTGAGAAAAACGGCATCGAAAAATCAAAGTGGGAATCGGTGGCCAGGTGTGAGTTTTCTTGGCCAACTGCCGGTAAAAGCGTG</canonical>
            <polymorphic>AAATTTTTTCCAAAAAAAATTTTTTTTTAATCTGAAAATGCTGCATTTTTTCCAAAAAAATATGAAATTGTTTGAATGTTTTTTCACAAAAAATTGAAAAATACTCAAAATTTTCACATATTTTTTGAAAAAAACCCGAAATTTTGGAATTTTTTTCCAAAAAAAATCTGAAAGTTTTGAATTTTTTCGAAAAAAAACTTGGAAAAAAAATCTGAAATTTTGCATTTTTTCCATGAAAATCTGAAAATTTAAAATTTTTTCCGAAAAAAAAAGAAAAAAATCGCATTTTTCGAATTTTTTCTAAAAAAATCTGAAATTGTCTAATTTTTGAAAATCTGCGTTTTTGAAATCTGGAAAATACAGAATTTTTTTACTTTTTTTCCCAATAAAAACTGGAAATCTTCAGGTTTTCTTTAGGAAAAATAATGGAAAAAAGCGGTAAAAATTTTAAGTTTTGACTTTTTTTTTTTGAAAATTTCATAGAAATTTTATAGATTTTSAATCAATTTTTTGAATTTTCGGCTTTTTTTCAGAACTCGCCAACCTTCTACTATAGCTTGAAGGATAGCGATAAATACATTGCCAAATCGGATCTTTTTGTGATTCTTCAGAATATCATGTTTAATATTTCGGACACCTCTGATTTCTGTTTGCTTTCAATTTTTATTGGTCATCTCAAGCTCCAAGAGCAACGAATTGGCTCTAATTTCGAGTTTGTCAAATGCGATGAATCGATTTTAGAGGAATTTTACAACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAATTTTACTGTTTATTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCTTTCATTGAGAAAAACGGCATCGAAAAATCAAAGTGGGAATCGGTGGCCAGGTGTGAGTTTTCTTGGCCAACTGCCGGTAAAAGCGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>500 221 127 102 50</canonical_bands>
                <polymorphic_bands>602 221 127 50</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 221 127 102 50</canonical_bands>
                <polymorphic_bands>602 221 127 50</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGAAATCTGGAAAATACAG</pcr_primer_p1>
		<pcr_primer_p2>GCAATGTATTTATCGCTATCCT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGAAATCTGGAAAATACAGAATTTTTTTACTTTTTTTCCCAATAAAAACTGGAAATCTTCAGGTTTTCTTTAGGAAAAATAATGGAAAAAAGCGGTAAAAATTTTAAGTTTTGACTTTTTTTTTTTGAAAATTTCATAGAAATTTTATAGATTTTGAATCAATTTTTTGAATTTTCGGCTTTTTTTCAGAACTCGCCAACCTTCTACTATAGCTTGAAGGATAGCGATAAATACATTGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGAAATCTGGAAAATACAGAATTTTTTTACTTTTTTTCCCAATAAAAACTGGAAATCTTCAGGTTTTCTTTAGGAAAAATAATGGAAAAAAGCGGTAAAAATTTTAAGTTTTGACTTTTTTTTTTTGAAAATTTCATAGAAATTTTATAGATTTTSAATCAATTTTTTGAATTTTCGGCTTTTTTTCAGAACTCGCCAACCTTCTACTATAGCTTGAAGGATAGCGATAAATACATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4566</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>120760</contig_pos>
        <strand>+</strand>
        <context>GCCAATCAAC[A/C]TTCCCTTTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATAAATTACAAAAAAAAAGCGCCAGCAGCACGCGAATCGCGCCAATCAAC</left_flank>
        <right_flank>TTCCCTTTGCGCATAACAATAAATTTCAGCTCAAAATCTTCGTTCACCAA</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATTTGTTATTAAAGTTTTCAAAAATCGGAAAATTTGGAAATTTTAAAAACTCAAAAATAATGAAAAATTCTAGAAGTTTCAATATTTTCGAATATTCCAAAAATTCCGAAATTCCAAAAAGATTGAACTACCAAAAATTGCAGAATTTTGGATATTTCTAAAAAAATTTCAATTCCAATATTTCTAGAATTTTCAAACTTGTAAATTGAAAATTTTCGAAAATCGAGTTTTAAAAAAATTTGAAAGTTCTAGAATTTTCAATAAAAATTGAAAATTCAATAATTTCTAGAAAAAATGAAAATTCTCAAAAATCTTGGATTTCGGAAAATTATTTTGAAAAAATTTCGAAAATTTTCCAATTCGAAAACTTTAAATTCAAAAAAAATTTATACATTTTTGACGATTTCAAAATATCGATTTTTAGACCTTTCGAGGTGAAAAATTCATAAATTACAAAAAAAAAGCGCCAGCAGCACGCGAATCGCGCCAATCAACATTCCCTTTGCGCATAACAATAAATTTCAGCTCAAAATCTTCGTTCACCAACAAAAAGGGTGTCATAGAGTGCTGAGCTACACCTGTGACTACTGTGATGGATTGCCGAGAATTCCAGAAAAGACACAAATGACAATTGGGGGATTCTTTAAAGCGATGACGTCTATTTCCAAGGTTTTGGAGATTCTTTCCACTCATAAGAAGAACCAGAAGGCGTCGGAGGAGAAGAAGGCGACTTTAGCGATTTTAGAAGATGTGGAATTGAAGAAACGGGAGAAGAAGGAGAGAAAGAAGGAGAGGAGAGCGCAGAGAAAGAAAGAAGAGAAATTGAAAATTTCTGCGTTGAAAAATGAAGGTTCAGAAGCGGAAAAGACGTCAGAAGACACCCAGAAGACGTCAGAAACCATTATCGATGAGCAACCAAAAAATGAAGATTCAGAATTCGAGAAGAGCTACAAAAATCTCAAAAATGATATTCAAAAAATTCTGAAAGCCTCTTCA</canonical>
            <polymorphic>AAAAATTTGTTATTAAAGTTTTCAAAAATCGGAAAATTTGGAAATTTTAAAAACTCAAAAATAATGAAAAATTCTAGAAGTTTCAATATTTTCGAATATTCCAAAAATTCCGAAATTCCAAAAAGATTGAACTACCAAAAATTGCAGAATTTTGGATATTTCTAAAAAAATTTCAATTCCAATATTTCTAGAATTTTCAAACTTGTAAATTGAAAATTTTCGAAAATCGAGTTTTAAAAAAATTTGAAAGTTCTAGAATTTTCAATAAAAATTGAAAATTCAATAATTTCTAGAAAAAATGAAAATTCTCAAAAATCTTGGATTTCGGAAAATTATTTTGAAAAAATTTCGAAAATTTTCCAATTCGAAAACTTTAAATTCAAAAAAAATTTATACATTTTTGACGATTTCAAAATATCGATTTTTAGACCTTTCGAGGTGAAAAATTCATAAATTACAAAAAAAAAGCGCCAGCAGCACGCGAATCGCGCCAATCAACMTTCCCTTTGCGCATAACAATAAATTTCAGCTCAAAATCTTCGTTCACCAACAAAAAGGGTGTCATAGAGTGCTGAGCTACACCTGTGACTACTGTGATGGATTGCCGAGAATTCCAGAAAAGACACAAATGACAATTGGGGGATTCTTTAAAGCGATGACGTCTATTTCCAAGGTTTTGGAGATTCTTTCCACTCATAAGAAGAACCAGAAGGCGTCGGAGGAGAAGAAGGCGACTTTAGCGATTTTAGAAGATGTGGAATTGAAGAAACGGGAGAAGAAGGAGAGAAAGAAGGAGAGGAGAGCGCAGAGAAAGAAAGAAGAGAAATTGAAAATTTCTGCGTTGAAAAATGAAGGTTCAGAAGCGGAAAAGACGTCAGAAGACACCCAGAAGACGTCAGAAACCATTATCGATGAGCAACCAAAAAATGAAGATTCAGAATTCGAGAAGAGCTACAAAAATCTCAAAAATGATATTCAAAAAATTCTGAAAGCCTCTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTATACATTTTTGACGATTTCA</pcr_primer_p1>
		<pcr_primer_p2>CAATTGTCATTTGTGTCTTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTATACATTTTTGACGATTTCAAAATATCGATTTTTAGACCTTTCGAGGTGAAAAATTCATAAATTACAAAAAAAAAGCGCCAGCAGCACGCGAATCGCGCCAATCAACATTCCCTTTGCGCATAACAATAAATTTCAGCTCAAAATCTTCGTTCACCAACAAAAAGGGTGTCATAGAGTGCTGAGCTACACCTGTGACTACTGTGATGGATTGCCGAGAATTCCAGAAAAGACACAAATGACAATTG</canonical_amplicon>
		<polymorphic_amplicon>TTTATACATTTTTGACGATTTCAAAATATCGATTTTTAGACCTTTCGAGGTGAAAAATTCATAAATTACAAAAAAAAAGCGCCAGCAGCACGCGAATCGCGCCAATCAACMTTCCCTTTGCGCATAACAATAAATTTCAGCTCAAAATCTTCGTTCACCAACAAAAAGGGTGTCATAGAGTGCTGAGCTACACCTGTGACTACTGTGATGGATTGCCGAGAATTCCAGAAAAGACACAAATGACAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4567</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>120865</contig_pos>
        <strand>+</strand>
        <context>TGATGGATTG[C/G]CGAGAATTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAGGGTGTCATAGAGTGCTGAGCTACACCTGTGACTACTGTGATGGATTG</left_flank>
        <right_flank>CGAGAATTCCAGAAAAGACACAAATGACAATTGGGGGATTCTTTAAAGCG</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCCGAAATTCCAAAAAGATTGAACTACCAAAAATTGCAGAATTTTGGATATTTCTAAAAAAATTTCAATTCCAATATTTCTAGAATTTTCAAACTTGTAAATTGAAAATTTTCGAAAATCGAGTTTTAAAAAAATTTGAAAGTTCTAGAATTTTCAATAAAAATTGAAAATTCAATAATTTCTAGAAAAAATGAAAATTCTCAAAAATCTTGGATTTCGGAAAATTATTTTGAAAAAATTTCGAAAATTTTCCAATTCGAAAACTTTAAATTCAAAAAAAATTTATACATTTTTGACGATTTCAAAATATCGATTTTTAGACCTTTCGAGGTGAAAAATTCATAAATTACAAAAAAAAAGCGCCAGCAGCACGCGAATCGCGCCAATCAACATTCCCTTTGCGCATAACAATAAATTTCAGCTCAAAATCTTCGTTCACCAACAAAAAGGGTGTCATAGAGTGCTGAGCTACACCTGTGACTACTGTGATGGATTGCCGAGAATTCCAGAAAAGACACAAATGACAATTGGGGGATTCTTTAAAGCGATGACGTCTATTTCCAAGGTTTTGGAGATTCTTTCCACTCATAAGAAGAACCAGAAGGCGTCGGAGGAGAAGAAGGCGACTTTAGCGATTTTAGAAGATGTGGAATTGAAGAAACGGGAGAAGAAGGAGAGAAAGAAGGAGAGGAGAGCGCAGAGAAAGAAAGAAGAGAAATTGAAAATTTCTGCGTTGAAAAATGAAGGTTCAGAAGCGGAAAAGACGTCAGAAGACACCCAGAAGACGTCAGAAACCATTATCGATGAGCAACCAAAAAATGAAGATTCAGAATTCGAGAAGAGCTACAAAAATCTCAAAAATGATATTCAAAAAATTCTGAAAGCCTCTTCACTACTCGAGAACATTCCAGGGACTCCTCCAGGAGATTCTCCAGGAGATCCAGAACCTACAGTACCCCAAAAGGAGTCGAAAAACTGTGAAAACTGTGAAAAGTAA</canonical>
            <polymorphic>AATTCCGAAATTCCAAAAAGATTGAACTACCAAAAATTGCAGAATTTTGGATATTTCTAAAAAAATTTCAATTCCAATATTTCTAGAATTTTCAAACTTGTAAATTGAAAATTTTCGAAAATCGAGTTTTAAAAAAATTTGAAAGTTCTAGAATTTTCAATAAAAATTGAAAATTCAATAATTTCTAGAAAAAATGAAAATTCTCAAAAATCTTGGATTTCGGAAAATTATTTTGAAAAAATTTCGAAAATTTTCCAATTCGAAAACTTTAAATTCAAAAAAAATTTATACATTTTTGACGATTTCAAAATATCGATTTTTAGACCTTTCGAGGTGAAAAATTCATAAATTACAAAAAAAAAGCGCCAGCAGCACGCGAATCGCGCCAATCAACATTCCCTTTGCGCATAACAATAAATTTCAGCTCAAAATCTTCGTTCACCAACAAAAAGGGTGTCATAGAGTGCTGAGCTACACCTGTGACTACTGTGATGGATTGSCGAGAATTCCAGAAAAGACACAAATGACAATTGGGGGATTCTTTAAAGCGATGACGTCTATTTCCAAGGTTTTGGAGATTCTTTCCACTCATAAGAAGAACCAGAAGGCGTCGGAGGAGAAGAAGGCGACTTTAGCGATTTTAGAAGATGTGGAATTGAAGAAACGGGAGAAGAAGGAGAGAAAGAAGGAGAGGAGAGCGCAGAGAAAGAAAGAAGAGAAATTGAAAATTTCTGCGTTGAAAAATGAAGGTTCAGAAGCGGAAAAGACGTCAGAAGACACCCAGAAGACGTCAGAAACCATTATCGATGAGCAACCAAAAAATGAAGATTCAGAATTCGAGAAGAGCTACAAAAATCTCAAAAATGATATTCAAAAAATTCTGAAAGCCTCTTCACTACTCGAGAACATTCCAGGGACTCCTCCAGGAGATTCTCCAGGAGATCCAGAACCTACAGTACCCCAAAAGGAGTCGAAAAACTGTGAAAACTGTGAAAAGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTAGACCTTTCGAGGTG</pcr_primer_p1>
		<pcr_primer_p2>GAAATAGACGTCATCGCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTAGACCTTTCGAGGTGAAAAATTCATAAATTACAAAAAAAAAGCGCCAGCAGCACGCGAATCGCGCCAATCAACATTCCCTTTGCGCATAACAATAAATTTCAGCTCAAAATCTTCGTTCACCAACAAAAAGGGTGTCATAGAGTGCTGAGCTACACCTGTGACTACTGTGATGGATTGCCGAGAATTCCAGAAAAGACACAAATGACAATTGGGGGATTCTTTAAAGCGATGACGTCTATTTC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTAGACCTTTCGAGGTGAAAAATTCATAAATTACAAAAAAAAAGCGCCAGCAGCACGCGAATCGCGCCAATCAACATTCCCTTTGCGCATAACAATAAATTTCAGCTCAAAATCTTCGTTCACCAACAAAAAGGGTGTCATAGAGTGCTGAGCTACACCTGTGACTACTGTGATGGATTGSCGAGAATTCCAGAAAAGACACAAATGACAATTGGGGGATTCTTTAAAGCGATGACGTCTATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4568</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>120902</contig_pos>
        <strand>+</strand>
        <context>ACAATTGGGG[C/G]ATTCTTTAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTGTGATGGATTGCCGAGAATTCCAGAAAAGACACAAATGACAATTGGGG</left_flank>
        <right_flank>ATTCTTTAAAGCGATGACGTCTATTTCCAAGGTTTTGGAGATTCTTTCCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCAGAATTTTGGATATTTCTAAAAAAATTTCAATTCCAATATTTCTAGAATTTTCAAACTTGTAAATTGAAAATTTTCGAAAATCGAGTTTTAAAAAAATTTGAAAGTTCTAGAATTTTCAATAAAAATTGAAAATTCAATAATTTCTAGAAAAAATGAAAATTCTCAAAAATCTTGGATTTCGGAAAATTATTTTGAAAAAATTTCGAAAATTTTCCAATTCGAAAACTTTAAATTCAAAAAAAATTTATACATTTTTGACGATTTCAAAATATCGATTTTTAGACCTTTCGAGGTGAAAAATTCATAAATTACAAAAAAAAAGCGCCAGCAGCACGCGAATCGCGCCAATCAACATTCCCTTTGCGCATAACAATAAATTTCAGCTCAAAATCTTCGTTCACCAACAAAAAGGGTGTCATAGAGTGCTGAGCTACACCTGTGACTACTGTGATGGATTGCCGAGAATTCCAGAAAAGACACAAATGACAATTGGGGGATTCTTTAAAGCGATGACGTCTATTTCCAAGGTTTTGGAGATTCTTTCCACTCATAAGAAGAACCAGAAGGCGTCGGAGGAGAAGAAGGCGACTTTAGCGATTTTAGAAGATGTGGAATTGAAGAAACGGGAGAAGAAGGAGAGAAAGAAGGAGAGGAGAGCGCAGAGAAAGAAAGAAGAGAAATTGAAAATTTCTGCGTTGAAAAATGAAGGTTCAGAAGCGGAAAAGACGTCAGAAGACACCCAGAAGACGTCAGAAACCATTATCGATGAGCAACCAAAAAATGAAGATTCAGAATTCGAGAAGAGCTACAAAAATCTCAAAAATGATATTCAAAAAATTCTGAAAGCCTCTTCACTACTCGAGAACATTCCAGGGACTCCTCCAGGAGATTCTCCAGGAGATCCAGAACCTACAGTACCCCAAAAGGAGTCGAAAAACTGTGAAAACTGTGAAAAGTAAACGGAAATTTCTGAAAAAATCGATTTTTCAAAATTTT</canonical>
            <polymorphic>TGCAGAATTTTGGATATTTCTAAAAAAATTTCAATTCCAATATTTCTAGAATTTTCAAACTTGTAAATTGAAAATTTTCGAAAATCGAGTTTTAAAAAAATTTGAAAGTTCTAGAATTTTCAATAAAAATTGAAAATTCAATAATTTCTAGAAAAAATGAAAATTCTCAAAAATCTTGGATTTCGGAAAATTATTTTGAAAAAATTTCGAAAATTTTCCAATTCGAAAACTTTAAATTCAAAAAAAATTTATACATTTTTGACGATTTCAAAATATCGATTTTTAGACCTTTCGAGGTGAAAAATTCATAAATTACAAAAAAAAAGCGCCAGCAGCACGCGAATCGCGCCAATCAACATTCCCTTTGCGCATAACAATAAATTTCAGCTCAAAATCTTCGTTCACCAACAAAAAGGGTGTCATAGAGTGCTGAGCTACACCTGTGACTACTGTGATGGATTGCCGAGAATTCCAGAAAAGACACAAATGACAATTGGGGSATTCTTTAAAGCGATGACGTCTATTTCCAAGGTTTTGGAGATTCTTTCCACTCATAAGAAGAACCAGAAGGCGTCGGAGGAGAAGAAGGCGACTTTAGCGATTTTAGAAGATGTGGAATTGAAGAAACGGGAGAAGAAGGAGAGAAAGAAGGAGAGGAGAGCGCAGAGAAAGAAAGAAGAGAAATTGAAAATTTCTGCGTTGAAAAATGAAGGTTCAGAAGCGGAAAAGACGTCAGAAGACACCCAGAAGACGTCAGAAACCATTATCGATGAGCAACCAAAAAATGAAGATTCAGAATTCGAGAAGAGCTACAAAAATCTCAAAAATGATATTCAAAAAATTCTGAAAGCCTCTTCACTACTCGAGAACATTCCAGGGACTCCTCCAGGAGATTCTCCAGGAGATCCAGAACCTACAGTACCCCAAAAGGAGTCGAAAAACTGTGAAAACTGTGAAAAGTAAACGGAAATTTCTGAAAAAATCGATTTTTCAAAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>341 250 159 89 69 40 39 13</canonical_bands>
                <polymorphic_bands>341 250 199 89 69 39 13</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>341 250 159 108 102 40</canonical_bands>
                <polymorphic_bands>341 250 199 108 102</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGAAAAATTCATAAATTACAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGTGGAAAGAATCTCCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>GGTGAAAAATTCATAAATTACAAAAAAAAAGCGCCAGCAGCACGCGAATCGCGCCAATCAACATTCCCTTTGCGCATAACAATAAATTTCAGCTCAAAATCTTCGTTCACCAACAAAAAGGGTGTCATAGAGTGCTGAGCTACACCTGTGACTACTGTGATGGATTGCCGAGAATTCCAGAAAAGACACAAATGACAATTGGGGGATTCTTTAAAGCGATGACGTCTATTTCCAAGGTTTTGGAGATTCTTTCCACT</canonical_amplicon>
		<polymorphic_amplicon>GGTGAAAAATTCATAAATTACAAAAAAAAAGCGCCAGCAGCACGCGAATCGCGCCAATCAACATTCCCTTTGCGCATAACAATAAATTTCAGCTCAAAATCTTCGTTCACCAACAAAAAGGGTGTCATAGAGTGCTGAGCTACACCTGTGACTACTGTGATGGATTGCCGAGAATTCCAGAAAAGACACAAATGACAATTGGGGSATTCTTTAAAGCGATGACGTCTATTTCCAAGGTTTTGGAGATTCTTTCCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4569</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>121114</contig_pos>
        <strand></strand>
        <context>GAAAAATGAA[G/A]GTTCAGAAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGCAGAGAAAGAAAGAAGAGAAATTGAAAATTTCTGCGTTGAAAAATGAA</left_flank>
        <right_flank>GTTCAGAAGCGGAAAAGACGTCAGAAGACACCCAGAAGACGTCAGAAACC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTCCAATTCGAAAACTTTAAATTCAAAAAAAATTTATACATTTTTGACGATTTCAAAATATCGATTTTTAGACCTTTCGAGGTGAAAAATTCATAAATTACAAAAAAAAAGCGCCAGCAGCACGCGAATCGCGCCAATCAACATTCCCTTTGCGCATAACAATAAATTTCAGCTCAAAATCTTCGTTCACCAACAAAAAGGGTGTCATAGAGTGCTGAGCTACACCTGTGACTACTGTGATGGATTGCCGAGAATTCCAGAAAAGACACAAATGACAATTGGGGGATTCTTTAAAGCGATGACGTCTATTTCCAAGGTTTTGGAGATTCTTTCCACTCATAAGAAGAACCAGAAGGCGTCGGAGGAGAAGAAGGCGACTTTAGCGATTTTAGAAGATGTGGAATTGAAGAAACGGGAGAAGAAGGAGAGAAAGAAGGAGAGGAGAGCGCAGAGAAAGAAAGAAGAGAAATTGAAAATTTCTGCGTTGAAAAATGAAGGTTCAGAAGCGGAAAAGACGTCAGAAGACACCCAGAAGACGTCAGAAACCATTATCGATGAGCAACCAAAAAATGAAGATTCAGAATTCGAGAAGAGCTACAAAAATCTCAAAAATGATATTCAAAAAATTCTGAAAGCCTCTTCACTACTCGAGAACATTCCAGGGACTCCTCCAGGAGATTCTCCAGGAGATCCAGAACCTACAGTACCCCAAAAGGAGTCGAAAAACTGTGAAAACTGTGAAAAGTAAACGGAAATTTCTGAAAAAATCGATTTTTCAAAATTTTCAGACAACTAGCTGATCTACAAAAAATCGCCAAAGAAAACGAGGAGCTAAAAGCTGAAATTTGAATTTTAAGCGCCCGAAAATCTCAAAAATCGGCTAAAAATTGGCAAGCTGAAAAGCAGGGAATGCAGCTGAGAATTCAAGAATTCCAGGCGGAAAACGATGAAAATCAACGAATGATGATTCAACAACTACTCGATGAATTGGATAAAA</canonical>
            <polymorphic>ATTTTCCAATTCGAAAACTTTAAATTCAAAAAAAATTTATACATTTTTGACGATTTCAAAATATCGATTTTTAGACCTTTCGAGGTGAAAAATTCATAAATTACAAAAAAAAAGCGCCAGCAGCACGCGAATCGCGCCAATCAACATTCCCTTTGCGCATAACAATAAATTTCAGCTCAAAATCTTCGTTCACCAACAAAAAGGGTGTCATAGAGTGCTGAGCTACACCTGTGACTACTGTGATGGATTGCCGAGAATTCCAGAAAAGACACAAATGACAATTGGGGGATTCTTTAAAGCGATGACGTCTATTTCCAAGGTTTTGGAGATTCTTTCCACTCATAAGAAGAACCAGAAGGCGTCGGAGGAGAAGAAGGCGACTTTAGCGATTTTAGAAGATGTGGAATTGAAGAAACGGGAGAAGAAGGAGAGAAAGAAGGAGAGGAGAGCGCAGAGAAAGAAAGAAGAGAAATTGAAAATTTCTGCGTTGAAAAATGAARGTTCAGAAGCGGAAAAGACGTCAGAAGACACCCAGAAGACGTCAGAAACCATTATCGATGAGCAACCAAAAAATGAAGATTCAGAATTCGAGAAGAGCTACAAAAATCTCAAAAATGATATTCAAAAAATTCTGAAAGCCTCTTCACTACTCGAGAACATTCCAGGGACTCCTCCAGGAGATTCTCCAGGAGATCCAGAACCTACAGTACCCCAAAAGGAGTCGAAAAACTGTGAAAACTGTGAAAAGTAAACGGAAATTTCTGAAAAAATCGATTTTTCAAAATTTTCAGACAACTAGCTGATCTACAAAAAATCGCCAAAGAAAACGAGGAGCTAAAAGCTGAAATTTGAATTTTAAGCGCCCGAAAATCTCAAAAATCGGCTAAAAATTGGCAAGCTGAAAAGCAGGGAATGCAGCTGAGAATTCAAGAATTCCAGGCGGAAAACGATGAAAATCAACGAATGATGATTCAACAACTACTCGATGAATTGGATAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGTCTATTTCCAAGGTTTTG</pcr_primer_p1>
		<pcr_primer_p2>GATAATGGTTTCTGACGTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACGTCTATTTCCAAGGTTTTGGAGATTCTTTCCACTCATAAGAAGAACCAGAAGGCGTCGGAGGAGAAGAAGGCGACTTTAGCGATTTTAGAAGATGTGGAATTGAAGAAACGGGAGAAGAAGGAGAGAAAGAAGGAGAGGAGAGCGCAGAGAAAGAAAGAAGAGAAATTGAAAATTTCTGCGTTGAAAAATGAAGGTTCAGAAGCGGAAAAGACGTCAGAAGACACCCAGAAGACGTCAGAAACCATTATC</canonical_amplicon>
		<polymorphic_amplicon>ACGTCTATTTCCAAGGTTTTGGAGATTCTTTCCACTCATAAGAAGAACCAGAAGGCGTCGGAGGAGAAGAAGGCGACTTTAGCGATTTTAGAAGATGTGGAATTGAAGAAACGGGAGAAGAAGGAGAGAAAGAAGGAGAGGAGAGCGCAGAGAAAGAAAGAAGAGAAATTGAAAATTTCTGCGTTGAAAAATGAARGTTCAGAAGCGGAAAAGACGTCAGAAGACACCCAGAAGACGTCAGAAACCATTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4570</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>121125</contig_pos>
        <strand>+</strand>
        <context>GTTCAGAAGC[C/G]GAAAAGACGT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAGAAGAGAAATTGAAAATTTCTGCGTTGAAAAATGAAGGTTCAGAAGC</left_flank>
        <right_flank>GAAAAGACGTCAGAAGACACCCAGAAGACGTCAGAAACCATTATCGATGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAAAACTTTAAATTCAAAAAAAATTTATACATTTTTGACGATTTCAAAATATCGATTTTTAGACCTTTCGAGGTGAAAAATTCATAAATTACAAAAAAAAAGCGCCAGCAGCACGCGAATCGCGCCAATCAACATTCCCTTTGCGCATAACAATAAATTTCAGCTCAAAATCTTCGTTCACCAACAAAAAGGGTGTCATAGAGTGCTGAGCTACACCTGTGACTACTGTGATGGATTGCCGAGAATTCCAGAAAAGACACAAATGACAATTGGGGGATTCTTTAAAGCGATGACGTCTATTTCCAAGGTTTTGGAGATTCTTTCCACTCATAAGAAGAACCAGAAGGCGTCGGAGGAGAAGAAGGCGACTTTAGCGATTTTAGAAGATGTGGAATTGAAGAAACGGGAGAAGAAGGAGAGAAAGAAGGAGAGGAGAGCGCAGAGAAAGAAAGAAGAGAAATTGAAAATTTCTGCGTTGAAAAATGAAGGTTCAGAAGCGGAAAAGACGTCAGAAGACACCCAGAAGACGTCAGAAACCATTATCGATGAGCAACCAAAAAATGAAGATTCAGAATTCGAGAAGAGCTACAAAAATCTCAAAAATGATATTCAAAAAATTCTGAAAGCCTCTTCACTACTCGAGAACATTCCAGGGACTCCTCCAGGAGATTCTCCAGGAGATCCAGAACCTACAGTACCCCAAAAGGAGTCGAAAAACTGTGAAAACTGTGAAAAGTAAACGGAAATTTCTGAAAAAATCGATTTTTCAAAATTTTCAGACAACTAGCTGATCTACAAAAAATCGCCAAAGAAAACGAGGAGCTAAAAGCTGAAATTTGAATTTTAAGCGCCCGAAAATCTCAAAAATCGGCTAAAAATTGGCAAGCTGAAAAGCAGGGAATGCAGCTGAGAATTCAAGAATTCCAGGCGGAAAACGATGAAAATCAACGAATGATGATTCAACAACTACTCGATGAATTGGATAAAAATCAATAATTT</canonical>
            <polymorphic>CGAAAACTTTAAATTCAAAAAAAATTTATACATTTTTGACGATTTCAAAATATCGATTTTTAGACCTTTCGAGGTGAAAAATTCATAAATTACAAAAAAAAAGCGCCAGCAGCACGCGAATCGCGCCAATCAACATTCCCTTTGCGCATAACAATAAATTTCAGCTCAAAATCTTCGTTCACCAACAAAAAGGGTGTCATAGAGTGCTGAGCTACACCTGTGACTACTGTGATGGATTGCCGAGAATTCCAGAAAAGACACAAATGACAATTGGGGGATTCTTTAAAGCGATGACGTCTATTTCCAAGGTTTTGGAGATTCTTTCCACTCATAAGAAGAACCAGAAGGCGTCGGAGGAGAAGAAGGCGACTTTAGCGATTTTAGAAGATGTGGAATTGAAGAAACGGGAGAAGAAGGAGAGAAAGAAGGAGAGGAGAGCGCAGAGAAAGAAAGAAGAGAAATTGAAAATTTCTGCGTTGAAAAATGAAGGTTCAGAAGCSGAAAAGACGTCAGAAGACACCCAGAAGACGTCAGAAACCATTATCGATGAGCAACCAAAAAATGAAGATTCAGAATTCGAGAAGAGCTACAAAAATCTCAAAAATGATATTCAAAAAATTCTGAAAGCCTCTTCACTACTCGAGAACATTCCAGGGACTCCTCCAGGAGATTCTCCAGGAGATCCAGAACCTACAGTACCCCAAAAGGAGTCGAAAAACTGTGAAAACTGTGAAAAGTAAACGGAAATTTCTGAAAAAATCGATTTTTCAAAATTTTCAGACAACTAGCTGATCTACAAAAAATCGCCAAAGAAAACGAGGAGCTAAAAGCTGAAATTTGAATTTTAAGCGCCCGAAAATCTCAAAAATCGGCTAAAAATTGGCAAGCTGAAAAGCAGGGAATGCAGCTGAGAATTCAAGAATTCCAGGCGGAAAACGATGAAAATCAACGAATGATGATTCAACAACTACTCGATGAATTGGATAAAAATCAATAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGGTTTTGGAGATTCTTTC</pcr_primer_p1>
		<pcr_primer_p2>TGCTCATCGATAATGGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAGGTTTTGGAGATTCTTTCCACTCATAAGAAGAACCAGAAGGCGTCGGAGGAGAAGAAGGCGACTTTAGCGATTTTAGAAGATGTGGAATTGAAGAAACGGGAGAAGAAGGAGAGAAAGAAGGAGAGGAGAGCGCAGAGAAAGAAAGAAGAGAAATTGAAAATTTCTGCGTTGAAAAATGAAGGTTCAGAAGCGGAAAAGACGTCAGAAGACACCCAGAAGACGTCAGAAACCATTATCGATGAGCA</canonical_amplicon>
		<polymorphic_amplicon>CAAGGTTTTGGAGATTCTTTCCACTCATAAGAAGAACCAGAAGGCGTCGGAGGAGAAGAAGGCGACTTTAGCGATTTTAGAAGATGTGGAATTGAAGAAACGGGAGAAGAAGGAGAGAAAGAAGGAGAGGAGAGCGCAGAGAAAGAAAGAAGAGAAATTGAAAATTTCTGCGTTGAAAAATGAAGGTTCAGAAGCSGAAAAGACGTCAGAAGACACCCAGAAGACGTCAGAAACCATTATCGATGAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4571</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>121201</contig_pos>
        <strand>+</strand>
        <context>AGATTCAGAA[G/T]TCGAGAAGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGACGTCAGAAACCATTATCGATGAGCAACCAAAAAATGAAGATTCAGAA</left_flank>
        <right_flank>TCGAGAAGAGCTACAAAAATCTCAAAAATGATATTCAAAAAATTCTGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATTCATAAATTACAAAAAAAAAGCGCCAGCAGCACGCGAATCGCGCCAATCAACATTCCCTTTGCGCATAACAATAAATTTCAGCTCAAAATCTTCGTTCACCAACAAAAAGGGTGTCATAGAGTGCTGAGCTACACCTGTGACTACTGTGATGGATTGCCGAGAATTCCAGAAAAGACACAAATGACAATTGGGGGATTCTTTAAAGCGATGACGTCTATTTCCAAGGTTTTGGAGATTCTTTCCACTCATAAGAAGAACCAGAAGGCGTCGGAGGAGAAGAAGGCGACTTTAGCGATTTTAGAAGATGTGGAATTGAAGAAACGGGAGAAGAAGGAGAGAAAGAAGGAGAGGAGAGCGCAGAGAAAGAAAGAAGAGAAATTGAAAATTTCTGCGTTGAAAAATGAAGGTTCAGAAGCGGAAAAGACGTCAGAAGACACCCAGAAGACGTCAGAAACCATTATCGATGAGCAACCAAAAAATGAAGATTCAGAATTCGAGAAGAGCTACAAAAATCTCAAAAATGATATTCAAAAAATTCTGAAAGCCTCTTCACTACTCGAGAACATTCCAGGGACTCCTCCAGGAGATTCTCCAGGAGATCCAGAACCTACAGTACCCCAAAAGGAGTCGAAAAACTGTGAAAACTGTGAAAAGTAAACGGAAATTTCTGAAAAAATCGATTTTTCAAAATTTTCAGACAACTAGCTGATCTACAAAAAATCGCCAAAGAAAACGAGGAGCTAAAAGCTGAAATTTGAATTTTAAGCGCCCGAAAATCTCAAAAATCGGCTAAAAATTGGCAAGCTGAAAAGCAGGGAATGCAGCTGAGAATTCAAGAATTCCAGGCGGAAAACGATGAAAATCAACGAATGATGATTCAACAACTACTCGATGAATTGGATAAAAATCAATAATTTTCGTTGAAAAATCTTTTAAAAAAAGATTTTTTGTCTGTAAAAATTGTATTTTTTTTTGTTTATTTGATTGTATAAG</canonical>
            <polymorphic>AAAAATTCATAAATTACAAAAAAAAAGCGCCAGCAGCACGCGAATCGCGCCAATCAACATTCCCTTTGCGCATAACAATAAATTTCAGCTCAAAATCTTCGTTCACCAACAAAAAGGGTGTCATAGAGTGCTGAGCTACACCTGTGACTACTGTGATGGATTGCCGAGAATTCCAGAAAAGACACAAATGACAATTGGGGGATTCTTTAAAGCGATGACGTCTATTTCCAAGGTTTTGGAGATTCTTTCCACTCATAAGAAGAACCAGAAGGCGTCGGAGGAGAAGAAGGCGACTTTAGCGATTTTAGAAGATGTGGAATTGAAGAAACGGGAGAAGAAGGAGAGAAAGAAGGAGAGGAGAGCGCAGAGAAAGAAAGAAGAGAAATTGAAAATTTCTGCGTTGAAAAATGAAGGTTCAGAAGCGGAAAAGACGTCAGAAGACACCCAGAAGACGTCAGAAACCATTATCGATGAGCAACCAAAAAATGAAGATTCAGAAKTCGAGAAGAGCTACAAAAATCTCAAAAATGATATTCAAAAAATTCTGAAAGCCTCTTCACTACTCGAGAACATTCCAGGGACTCCTCCAGGAGATTCTCCAGGAGATCCAGAACCTACAGTACCCCAAAAGGAGTCGAAAAACTGTGAAAACTGTGAAAAGTAAACGGAAATTTCTGAAAAAATCGATTTTTCAAAATTTTCAGACAACTAGCTGATCTACAAAAAATCGCCAAAGAAAACGAGGAGCTAAAAGCTGAAATTTGAATTTTAAGCGCCCGAAAATCTCAAAAATCGGCTAAAAATTGGCAAGCTGAAAAGCAGGGAATGCAGCTGAGAATTCAAGAATTCCAGGCGGAAAACGATGAAAATCAACGAATGATGATTCAACAACTACTCGATGAATTGGATAAAAATCAATAATTTTCGTTGAAAAATCTTTTAAAAAAAGATTTTTTGTCTGTAAAAATTGTATTTTTTTTTGTTTATTTGATTGTATAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>222 156 129 107 88 77 72 63 43 26 8 6 3</canonical_bands>
                <polymorphic_bands>222 156 150 129 88 77 72 63 26 8 6 3</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>339 329 168 156 8</canonical_bands>
                <polymorphic_bands>668 168 156 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>129 125 107 88 69 66 63 57 46 43 37 35 35 26 24 18 8 8 7 6 3</canonical_bands>
                <polymorphic_bands>150 129 125 88 69 66 63 57 46 37 35 35 26 24 18 8 8 7 6 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTTCTGCGTTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACTCCTTTTGGGGTACTGTAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAATTTCTGCGTTGAAAAATGAAGGTTCAGAAGCGGAAAAGACGTCAGAAGACACCCAGAAGACGTCAGAAACCATTATCGATGAGCAACCAAAAAATGAAGATTCAGAATTCGAGAAGAGCTACAAAAATCTCAAAAATGATATTCAAAAAATTCTGAAAGCCTCTTCACTACTCGAGAACATTCCAGGGACTCCTCCAGGAGATTCTCCAGGAGATCCAGAACCTACAGTACCCCAAAAGGAGT</canonical_amplicon>
		<polymorphic_amplicon>AAAATTTCTGCGTTGAAAAATGAAGGTTCAGAAGCGGAAAAGACGTCAGAAGACACCCAGAAGACGTCAGAAACCATTATCGATGAGCAACCAAAAAATGAAGATTCAGAAKTCGAGAAGAGCTACAAAAATCTCAAAAATGATATTCAAAAAATTCTGAAAGCCTCTTCACTACTCGAGAACATTCCAGGGACTCCTCCAGGAGATTCTCCAGGAGATCCAGAACCTACAGTACCCCAAAAGGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4572</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>121366</contig_pos>
        <strand>+</strand>
        <context>TGAAAAGTAA[A/G]CGGAAATTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTACAGTACCCCAAAAGGAGTCGAAAAACTGTGAAAACTGTGAAAAGTAA</left_flank>
        <right_flank>CGGAAATTTCTGAAAAAATCGATTTTTCAAAATTTTCAGACAACTAGCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAATTCCAGAAAAGACACAAATGACAATTGGGGGATTCTTTAAAGCGATGACGTCTATTTCCAAGGTTTTGGAGATTCTTTCCACTCATAAGAAGAACCAGAAGGCGTCGGAGGAGAAGAAGGCGACTTTAGCGATTTTAGAAGATGTGGAATTGAAGAAACGGGAGAAGAAGGAGAGAAAGAAGGAGAGGAGAGCGCAGAGAAAGAAAGAAGAGAAATTGAAAATTTCTGCGTTGAAAAATGAAGGTTCAGAAGCGGAAAAGACGTCAGAAGACACCCAGAAGACGTCAGAAACCATTATCGATGAGCAACCAAAAAATGAAGATTCAGAATTCGAGAAGAGCTACAAAAATCTCAAAAATGATATTCAAAAAATTCTGAAAGCCTCTTCACTACTCGAGAACATTCCAGGGACTCCTCCAGGAGATTCTCCAGGAGATCCAGAACCTACAGTACCCCAAAAGGAGTCGAAAAACTGTGAAAACTGTGAAAAGTAAACGGAAATTTCTGAAAAAATCGATTTTTCAAAATTTTCAGACAACTAGCTGATCTACAAAAAATCGCCAAAGAAAACGAGGAGCTAAAAGCTGAAATTTGAATTTTAAGCGCCCGAAAATCTCAAAAATCGGCTAAAAATTGGCAAGCTGAAAAGCAGGGAATGCAGCTGAGAATTCAAGAATTCCAGGCGGAAAACGATGAAAATCAACGAATGATGATTCAACAACTACTCGATGAATTGGATAAAAATCAATAATTTTCGTTGAAAAATCTTTTAAAAAAAGATTTTTTGTCTGTAAAAATTGTATTTTTTTTTGTTTATTTGATTGTATAAGGCATAATTATCAATAAAGCTTGTTTTTCTCTCTATTAAAAGATTGTTTCGCACTAGAGTAACGTGTCGACACAGAGTCGTATCGACACAAGTGAAAAATATCTGAAAAATCGTATCGACGCAAGTCGGCACAGAGTCGACTTGTGTCGACTCGCGTGTCGCGTCG</canonical>
            <polymorphic>GAGAATTCCAGAAAAGACACAAATGACAATTGGGGGATTCTTTAAAGCGATGACGTCTATTTCCAAGGTTTTGGAGATTCTTTCCACTCATAAGAAGAACCAGAAGGCGTCGGAGGAGAAGAAGGCGACTTTAGCGATTTTAGAAGATGTGGAATTGAAGAAACGGGAGAAGAAGGAGAGAAAGAAGGAGAGGAGAGCGCAGAGAAAGAAAGAAGAGAAATTGAAAATTTCTGCGTTGAAAAATGAAGGTTCAGAAGCGGAAAAGACGTCAGAAGACACCCAGAAGACGTCAGAAACCATTATCGATGAGCAACCAAAAAATGAAGATTCAGAATTCGAGAAGAGCTACAAAAATCTCAAAAATGATATTCAAAAAATTCTGAAAGCCTCTTCACTACTCGAGAACATTCCAGGGACTCCTCCAGGAGATTCTCCAGGAGATCCAGAACCTACAGTACCCCAAAAGGAGTCGAAAAACTGTGAAAACTGTGAAAAGTAARCGGAAATTTCTGAAAAAATCGATTTTTCAAAATTTTCAGACAACTAGCTGATCTACAAAAAATCGCCAAAGAAAACGAGGAGCTAAAAGCTGAAATTTGAATTTTAAGCGCCCGAAAATCTCAAAAATCGGCTAAAAATTGGCAAGCTGAAAAGCAGGGAATGCAGCTGAGAATTCAAGAATTCCAGGCGGAAAACGATGAAAATCAACGAATGATGATTCAACAACTACTCGATGAATTGGATAAAAATCAATAATTTTCGTTGAAAAATCTTTTAAAAAAAGATTTTTTGTCTGTAAAAATTGTATTTTTTTTTGTTTATTTGATTGTATAAGGCATAATTATCAATAAAGCTTGTTTTTCTCTCTATTAAAAGATTGTTTCGCACTAGAGTAACGTGTCGACACAGAGTCGTATCGACACAAGTGAAAAATATCTGAAAAATCGTATCGACGCAAGTCGGCACAGAGTCGACTTGTGTCGACTCGCGTGTCGCGTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 404 70 18 10</canonical_bands>
                <polymorphic_bands>902 70 18 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGAGCTACAAAAATCTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTAGCTCCTCGTTTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAGAGCTACAAAAATCTCAAAAATGATATTCAAAAAATTCTGAAAGCCTCTTCACTACTCGAGAACATTCCAGGGACTCCTCCAGGAGATTCTCCAGGAGATCCAGAACCTACAGTACCCCAAAAGGAGTCGAAAAACTGTGAAAACTGTGAAAAGTAAACGGAAATTTCTGAAAAAATCGATTTTTCAAAATTTTCAGACAACTAGCTGATCTACAAAAAATCGCCAAAGAAAACGAGGAGCTAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAAGAGCTACAAAAATCTCAAAAATGATATTCAAAAAATTCTGAAAGCCTCTTCACTACTCGAGAACATTCCAGGGACTCCTCCAGGAGATTCTCCAGGAGATCCAGAACCTACAGTACCCCAAAAGGAGTCGAAAAACTGTGAAAACTGTGAAAAGTAARCGGAAATTTCTGAAAAAATCGATTTTTCAAAATTTTCAGACAACTAGCTGATCTACAAAAAATCGCCAAAGAAAACGAGGAGCTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4573</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>125139</contig_pos>
        <strand>+</strand>
        <context>TGAAGAGAAA[A/C]ATATGAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTTGAAATTTTTTTTTCGAAAAAAAATCTGAAACATTTTGAAGAGAAA</left_flank>
        <right_flank>ATATGAAAATTAAAAAATATGAAATTTTTCTGAGAAAAATATGAAATTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTCGAAATTTCAACGGAATTGTTAAAAAAATTTTTTTCAAAAAAGCCAATTTCTCAATAGAGCGCATTTTCGAAATTCAAACCAACCTTTGGATATCGTTTAAAAATACACAAAATCTGGCACATTTCCACCGCGTCAAACATATCGGAAGTCCTCAAAAATTCGCCCTTTTTTCGTTTTTCAATTTCCCGAAAAACGATTCTCGCGTATTTTTGAATTTCCGGAGAAATCGTGGTGAGACCCAAACGGACTAGCTCAATCTCCAGATTCCTTTCTGTGAATCCATCGGCTGGCACGTTTCGAATCGTTTGAACATTGGCAGCATGATCACAGTATTGGCTCTCAGTGTTGGCTAGACATTCGACACGAATGAAGGCGTGGGGTGTCTGGAAATTTTGAAATTCTGGAAAAATAACTTTTTGGCTGAAATTTGGAAAAAAAATGAAATTTTTGAAATTTTTTTTTCGAAAAAAAATCTGAAACATTTTGAAGAGAAACATATGAAAATTAAAAAATATGAAATTTTTCTGAGAAAAATATGAAATTTCTGCCGAAAAAATCGAAATTTTTGAAATTTTCAAAAAATATTTTCTGAACTTTTCAGGCCATTTTTGACTAATTTTTGCGCATTTTTTGGAATTTTCATCTGATTTTTGACCTATTTTTCAGCCAAAAAACGAACAAATTCAGAATCGCAAAACGTTTGAATCGTATCCAAGACTCGACAAATATCCTGCCAACACTTGGCCCGTTGAAGGGATTTCGCTCCGAAAATCAGAAATTTCAGAAACGAATCGAAAAGTGCGTCGACACAAAGAACACAGAATCCGTCTCGTGTTGGTCCCTGGAGATAGACGGCACGATGTTTTGAACGTTGAATCGGATAACGGATGAACTGCAAAAAATATCGATTTTTGAAAGAATTGTTATTAGAGCGAGTTTGCAGATTTTTGGAATTTGAAAAAAAAAAGTTATCATTAAAGCGAGTTTTCGAAAAA</canonical>
            <polymorphic>AATTCGAAATTTCAACGGAATTGTTAAAAAAATTTTTTTCAAAAAAGCCAATTTCTCAATAGAGCGCATTTTCGAAATTCAAACCAACCTTTGGATATCGTTTAAAAATACACAAAATCTGGCACATTTCCACCGCGTCAAACATATCGGAAGTCCTCAAAAATTCGCCCTTTTTTCGTTTTTCAATTTCCCGAAAAACGATTCTCGCGTATTTTTGAATTTCCGGAGAAATCGTGGTGAGACCCAAACGGACTAGCTCAATCTCCAGATTCCTTTCTGTGAATCCATCGGCTGGCACGTTTCGAATCGTTTGAACATTGGCAGCATGATCACAGTATTGGCTCTCAGTGTTGGCTAGACATTCGACACGAATGAAGGCGTGGGGTGTCTGGAAATTTTGAAATTCTGGAAAAATAACTTTTTGGCTGAAATTTGGAAAAAAAATGAAATTTTTGAAATTTTTTTTTCGAAAAAAAATCTGAAACATTTTGAAGAGAAAMATATGAAAATTAAAAAATATGAAATTTTTCTGAGAAAAATATGAAATTTCTGCCGAAAAAATCGAAATTTTTGAAATTTTCAAAAAATATTTTCTGAACTTTTCAGGCCATTTTTGACTAATTTTTGCGCATTTTTTGGAATTTTCATCTGATTTTTGACCTATTTTTCAGCCAAAAAACGAACAAATTCAGAATCGCAAAACGTTTGAATCGTATCCAAGACTCGACAAATATCCTGCCAACACTTGGCCCGTTGAAGGGATTTCGCTCCGAAAATCAGAAATTTCAGAAACGAATCGAAAAGTGCGTCGACACAAAGAACACAGAATCCGTCTCGTGTTGGTCCCTGGAGATAGACGGCACGATGTTTTGAACGTTGAATCGGATAACGGATGAACTGCAAAAAATATCGATTTTTGAAAGAATTGTTATTAGAGCGAGTTTGCAGATTTTTGGAATTTGAAAAAAAAAAGTTATCATTAAAGCGAGTTTTCGAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATATG</site>
                <isoschizomers>
                    <enzyme>FauNDI</enzyme>
                    <enzyme>NdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATAACTTTTTGGCTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATCAGATGAAAATTCCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAATAACTTTTTGGCTGAAATTTGGAAAAAAAATGAAATTTTTGAAATTTTTTTTTCGAAAAAAAATCTGAAACATTTTGAAGAGAAACATATGAAAATTAAAAAATATGAAATTTTTCTGAGAAAAATATGAAATTTCTGCCGAAAAAATCGAAATTTTTGAAATTTTCAAAAAATATTTTCTGAACTTTTCAGGCCATTTTTGACTAATTTTTGCGCATTTTTTGGAATTTTCATCTGATTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATAACTTTTTGGCTGAAATTTGGAAAAAAAATGAAATTTTTGAAATTTTTTTTTCGAAAAAAAATCTGAAACATTTTGAAGAGAAAMATATGAAAATTAAAAAATATGAAATTTTTCTGAGAAAAATATGAAATTTCTGCCGAAAAAATCGAAATTTTTGAAATTTTCAAAAAATATTTTCTGAACTTTTCAGGCCATTTTTGACTAATTTTTGCGCATTTTTTGGAATTTTCATCTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4574</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>27585</contig_pos>
        <strand>+</strand>
        <context>GAATGAATGA[A/G]ACAGTGGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGCGAATAATTTTTCAAGTTTTGGATAAAATACCTCTTGGAATGAATGA</left_flank>
        <right_flank>ACAGTGGAATACAGTATTTCCCATTTTCCCTCGTTTTTTTTGAGGTTTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGCAATTTTTTAATCTATGTCTGTTTTACATCCTCCAAAATTTTCAAAATCATCGGAAACTTGACAGCCGAGCTCCAGACTCCGGTAAAAATTTCTTGAATTTTTCCAATCAATATATTTTTAAAAATAATCTGAAAATCCAATTCTGTCCAAAAACCAACTTCCTAGCTCATCTAGAACTCGAGATACGGAAGTTTTCGAGGTTAGAGACGCAGCGTGTCTCGTCGTCTGCCTCTCTAACCTCCTGAACCTGGAGTGGCTCTAGCTCGGTTGCTAGAAGCGCTGGAATTGTGATTTTTTGACAAAATTGTAGGAAATGTTGTCTATTTTTTTAATTAATTATGCAAAAGTTACGAAATTGTCAAAATAGCGGAAAATCAACAGAAAACTAAGTTTTTGTATATCTTATTAAACGGTTTTGTATATTTTGAAGTTTTTCGTAAAAAGAGCGAATAATTTTTCAAGTTTTGGATAAAATACCTCTTGGAATGAATGAAACAGTGGAATACAGTATTTCCCATTTTCCCTCGTTTTTTTTGAGGTTTTCAACTACTTGCCGATTTCTGAACGACACTCGCGTTTTTTTCACGTTTTCAGTACAAAAATAGATAAAAAAGGGTGTATTTTAGAAATCGGCAAATAACTGAAAAACTAGGAATTTTCAAAAAAGTCTGCGAATGCAAACGTTTCAATGTAGGTCTGTTTTCTAACATCCAACGTTTTCAAAATGATCGGAGCATGGACAGCCGAGACTCCTGAAAATGTGCAGAATCAACTCATAAATGCGTTGTTACTGAACGGTGCTCAATTTTTAATAAGACAAAAATAGCAAAGCTTGGATATGAGCAGTTTATTTTTAAGCAAACAAAACCAATTCCACATGCGATTAAGCAAAAGAAAATCAAATATCGATTGAATCAACACCGAGATCATTGAAGACTTCGTACCATGTGTTGCTACTGTTGATGAGATCCGAGGAGATGACATCATCGGAAAA</canonical>
            <polymorphic>AAATGCAATTTTTTAATCTATGTCTGTTTTACATCCTCCAAAATTTTCAAAATCATCGGAAACTTGACAGCCGAGCTCCAGACTCCGGTAAAAATTTCTTGAATTTTTCCAATCAATATATTTTTAAAAATAATCTGAAAATCCAATTCTGTCCAAAAACCAACTTCCTAGCTCATCTAGAACTCGAGATACGGAAGTTTTCGAGGTTAGAGACGCAGCGTGTCTCGTCGTCTGCCTCTCTAACCTCCTGAACCTGGAGTGGCTCTAGCTCGGTTGCTAGAAGCGCTGGAATTGTGATTTTTTGACAAAATTGTAGGAAATGTTGTCTATTTTTTTAATTAATTATGCAAAAGTTACGAAATTGTCAAAATAGCGGAAAATCAACAGAAAACTAAGTTTTTGTATATCTTATTAAACGGTTTTGTATATTTTGAAGTTTTTCGTAAAAAGAGCGAATAATTTTTCAAGTTTTGGATAAAATACCTCTTGGAATGAATGARACAGTGGAATACAGTATTTCCCATTTTCCCTCGTTTTTTTTGAGGTTTTCAACTACTTGCCGATTTCTGAACGACACTCGCGTTTTTTTCACGTTTTCAGTACAAAAATAGATAAAAAAGGGTGTATTTTAGAAATCGGCAAATAACTGAAAAACTAGGAATTTTCAAAAAAGTCTGCGAATGCAAACGTTTCAATGTAGGTCTGTTTTCTAACATCCAACGTTTTCAAAATGATCGGAGCATGGACAGCCGAGACTCCTGAAAATGTGCAGAATCAACTCATAAATGCGTTGTTACTGAACGGTGCTCAATTTTTAATAAGACAAAAATAGCAAAGCTTGGATATGAGCAGTTTATTTTTAAGCAAACAAAACCAATTCCACATGCGATTAAGCAAAAGAAAATCAAATATCGATTGAATCAACACCGAGATCATTGAAGACTTCGTACCATGTGTTGCTACTGTTGATGAGATCCGAGGAGATGACATCATCGGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAGCGAATAATTTTTCAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTCTTATTAAAAATTGAGCAC</pcr_primer_p2>
		<pcr_amplicon_size>380</pcr_amplicon_size>
		<canonical_amplicon>AAGAGCGAATAATTTTTCAAGTTTTGGATAAAATACCTCTTGGAATGAATGAAACAGTGGAATACAGTATTTCCCATTTTCCCTCGTTTTTTTTGAGGTTTTCAACTACTTGCCGATTTCTGAACGACACTCGCGTTTTTTTCACGTTTTCAGTACAAAAATAGATAAAAAAGGGTGTATTTTAGAAATCGGCAAATAACTGAAAAACTAGGAATTTTCAAAAAAGTCTGCGAATGCAAACGTTTCAATGTAGGTCTGTTTTCTAACATCCAACGTTTTCAAAATGATCGGAGCATGGACAGCCGAGACTCCTGAAAATGTGCAGAATCAACTCATAAATGCGTTGTTACTGAACGGTGCTCAATTTTTAATAAGACAAA</canonical_amplicon>
		<polymorphic_amplicon>AAGAGCGAATAATTTTTCAAGTTTTGGATAAAATACCTCTTGGAATGAATGARACAGTGGAATACAGTATTTCCCATTTTCCCTCGTTTTTTTTGAGGTTTTCAACTACTTGCCGATTTCTGAACGACACTCGCGTTTTTTTCACGTTTTCAGTACAAAAATAGATAAAAAAGGGTGTATTTTAGAAATCGGCAAATAACTGAAAAACTAGGAATTTTCAAAAAAGTCTGCGAATGCAAACGTTTCAATGTAGGTCTGTTTTCTAACATCCAACGTTTTCAAAATGATCGGAGCATGGACAGCCGAGACTCCTGAAAATGTGCAGAATCAACTCATAAATGCGTTGTTACTGAACGGTGCTCAATTTTTAATAAGACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4575</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>246457</contig_pos>
        <strand></strand>
        <context>CAAACGGAAG[A/G]GAAGGTTTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGCGATTCCAGATGGAGCATTTTTGGGTAAAAAATTAAACAAACGGAAG</left_flank>
        <right_flank>GAAGGTTTAGGCTGAGGAAGGGGAAATATTGCGAAATTCGTATAGGAAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTCAACAACTCGTTTGCACCGCATTCGGAACAAAATCCGGAACTTGAATTCTGAAATGCTCGATTTTCCACTATCTCTCTATCTCTTTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAGACACCCCGCTCACCGAGCTGTGCGTCGATTTCCGAATAATGTCAAACACATTTTTCTCATAGTTCTCGATTATGTCTGATGAACTAAAATTGATGGTTCCATTTTCAAATGCACCGTTTTTCTGGCACTTTGGACACTTTTGGTGGGGGTTTGATTTTGCGCAGGTTAAGCATATCGAATGACCACAGGAGCCTACAAATGCTCGCCGCGAATCGTTATCTGTAAAAGTTTATACGGATATAGAATCCTGATAATTGGAGCTAACCAAACAGTGTGATTTTATTATTGTCCGTTTTGCATGAATAGCAAATTAGCGATTCCAGATGGAGCATTTTTGGGTAAAAAATTAAACAAACGGAAGAGAAGGTTTAGGCTGAGGAAGGGGAAATATTGCGAAATTCGTATAGGAAGAGTGAAGAGAAAGAGACAACGACGGATGGAAAAGAAAATCAACATCAACAAGAAGAGAACGACTTGACTGTGAACAACAAAAAAGAATCGTAGTTATTTTAACTTCAATTATCTCGGTTCCTTATATTTCAAACCGATTTTATATGGTTTCAAACCGTTTACTTAGGTACCATATATCTCATTTTTGATAAAGGACTTGAAACAAATAGTGTCAACTGATGAAAAATAGATGATATTATAGTAAACAATTTATCAGTTGTCAAGCTTTTGATATCTTTCAGACGAATCGAACTAATTTTGTTGTCGACAAACAATATTGACGGCTTGAGAGGGCTTCTTTTTCAGCTTTTTCACCTTCATCGTTTATCACAACAATAGTTTCCAATGGTTCGGATGCCTGCCAATGAACTCTTGTGACGCCTTGTAAAGAGAGCAAAAAAGGTTTCTACTA</canonical>
            <polymorphic>TTCTCAACAACTCGTTTGCACCGCATTCGGAACAAAATCCGGAACTTGAATTCTGAAATGCTCGATTTTCCACTATCTCTCTATCTCTTTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAGACACCCCGCTCACCGAGCTGTGCGTCGATTTCCGAATAATGTCAAACACATTTTTCTCATAGTTCTCGATTATGTCTGATGAACTAAAATTGATGGTTCCATTTTCAAATGCACCGTTTTTCTGGCACTTTGGACACTTTTGGTGGGGGTTTGATTTTGCGCAGGTTAAGCATATCGAATGACCACAGGAGCCTACAAATGCTCGCCGCGAATCGTTATCTGTAAAAGTTTATACGGATATAGAATCCTGATAATTGGAGCTAACCAAACAGTGTGATTTTATTATTGTCCGTTTTGCATGAATAGCAAATTAGCGATTCCAGATGGAGCATTTTTGGGTAAAAAATTAAACAAACGGAAGRGAAGGTTTAGGCTGAGGAAGGGGAAATATTGCGAAATTCGTATAGGAAGAGTGAAGAGAAAGAGACAACGACGGATGGAAAAGAAAATCAACATCAACAAGAAGAGAACGACTTGACTGTGAACAACAAAAAAGAATCGTAGTTATTTTAACTTCAATTATCTCGGTTCCTTATATTTCAAACCGATTTTATATGGTTTCAAACCGTTTACTTAGGTACCATATATCTCATTTTTGATAAAGGACTTGAAACAAATAGTGTCAACTGATGAAAAATAGATGATATTATAGTAAACAATTTATCAGTTGTCAAGCTTTTGATATCTTTCAGACGAATCGAACTAATTTTGTTGTCGACAAACAATATTGACGGCTTGAGAGGGCTTCTTTTTCAGCTTTTTCACCTTCATCGTTTATCACAACAATAGTTTCCAATGGTTCGGATGCCTGCCAATGAACTCTTGTGACGCCTTGTAAAGAGAGCAAAAAAGGTTTCTACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGATATAGAATCCTGATAATTG</pcr_primer_p1>
		<pcr_primer_p2>ACAGTCAAGTCGTTCTCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGGATATAGAATCCTGATAATTGGAGCTAACCAAACAGTGTGATTTTATTATTGTCCGTTTTGCATGAATAGCAAATTAGCGATTCCAGATGGAGCATTTTTGGGTAAAAAATTAAACAAACGGAAGAGAAGGTTTAGGCTGAGGAAGGGGAAATATTGCGAAATTCGTATAGGAAGAGTGAAGAGAAAGAGACAACGACGGATGGAAAAGAAAATCAACATCAACAAGAAGAGAACGACTTGACTGT</canonical_amplicon>
		<polymorphic_amplicon>CGGATATAGAATCCTGATAATTGGAGCTAACCAAACAGTGTGATTTTATTATTGTCCGTTTTGCATGAATAGCAAATTAGCGATTCCAGATGGAGCATTTTTGGGTAAAAAATTAAACAAACGGAAGRGAAGGTTTAGGCTGAGGAAGGGGAAATATTGCGAAATTCGTATAGGAAGAGTGAAGAGAAAGAGACAACGACGGATGGAAAAGAAAATCAACATCAACAAGAAGAGAACGACTTGACTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4576</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>246482</contig_pos>
        <strand></strand>
        <context>AGGAAGGGGA[A/C]ATATTGCGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGGTAAAAAATTAAACAAACGGAAGAGAAGGTTTAGGCTGAGGAAGGGGA</left_flank>
        <right_flank>ATATTGCGAAATTCGTATAGGAAGAGTGAAGAGAAAGAGACAACGACGGA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGGAACAAAATCCGGAACTTGAATTCTGAAATGCTCGATTTTCCACTATCTCTCTATCTCTTTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAGACACCCCGCTCACCGAGCTGTGCGTCGATTTCCGAATAATGTCAAACACATTTTTCTCATAGTTCTCGATTATGTCTGATGAACTAAAATTGATGGTTCCATTTTCAAATGCACCGTTTTTCTGGCACTTTGGACACTTTTGGTGGGGGTTTGATTTTGCGCAGGTTAAGCATATCGAATGACCACAGGAGCCTACAAATGCTCGCCGCGAATCGTTATCTGTAAAAGTTTATACGGATATAGAATCCTGATAATTGGAGCTAACCAAACAGTGTGATTTTATTATTGTCCGTTTTGCATGAATAGCAAATTAGCGATTCCAGATGGAGCATTTTTGGGTAAAAAATTAAACAAACGGAAGAGAAGGTTTAGGCTGAGGAAGGGGAAATATTGCGAAATTCGTATAGGAAGAGTGAAGAGAAAGAGACAACGACGGATGGAAAAGAAAATCAACATCAACAAGAAGAGAACGACTTGACTGTGAACAACAAAAAAGAATCGTAGTTATTTTAACTTCAATTATCTCGGTTCCTTATATTTCAAACCGATTTTATATGGTTTCAAACCGTTTACTTAGGTACCATATATCTCATTTTTGATAAAGGACTTGAAACAAATAGTGTCAACTGATGAAAAATAGATGATATTATAGTAAACAATTTATCAGTTGTCAAGCTTTTGATATCTTTCAGACGAATCGAACTAATTTTGTTGTCGACAAACAATATTGACGGCTTGAGAGGGCTTCTTTTTCAGCTTTTTCACCTTCATCGTTTATCACAACAATAGTTTCCAATGGTTCGGATGCCTGCCAATGAACTCTTGTGACGCCTTGTAAAGAGAGCAAAAAAGGTTTCTACTAATAAGGCAAATAATTCGAAGGGTGA</canonical>
            <polymorphic>TTCGGAACAAAATCCGGAACTTGAATTCTGAAATGCTCGATTTTCCACTATCTCTCTATCTCTTTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAGACACCCCGCTCACCGAGCTGTGCGTCGATTTCCGAATAATGTCAAACACATTTTTCTCATAGTTCTCGATTATGTCTGATGAACTAAAATTGATGGTTCCATTTTCAAATGCACCGTTTTTCTGGCACTTTGGACACTTTTGGTGGGGGTTTGATTTTGCGCAGGTTAAGCATATCGAATGACCACAGGAGCCTACAAATGCTCGCCGCGAATCGTTATCTGTAAAAGTTTATACGGATATAGAATCCTGATAATTGGAGCTAACCAAACAGTGTGATTTTATTATTGTCCGTTTTGCATGAATAGCAAATTAGCGATTCCAGATGGAGCATTTTTGGGTAAAAAATTAAACAAACGGAAGAGAAGGTTTAGGCTGAGGAAGGGGAMATATTGCGAAATTCGTATAGGAAGAGTGAAGAGAAAGAGACAACGACGGATGGAAAAGAAAATCAACATCAACAAGAAGAGAACGACTTGACTGTGAACAACAAAAAAGAATCGTAGTTATTTTAACTTCAATTATCTCGGTTCCTTATATTTCAAACCGATTTTATATGGTTTCAAACCGTTTACTTAGGTACCATATATCTCATTTTTGATAAAGGACTTGAAACAAATAGTGTCAACTGATGAAAAATAGATGATATTATAGTAAACAATTTATCAGTTGTCAAGCTTTTGATATCTTTCAGACGAATCGAACTAATTTTGTTGTCGACAAACAATATTGACGGCTTGAGAGGGCTTCTTTTTCAGCTTTTTCACCTTCATCGTTTATCACAACAATAGTTTCCAATGGTTCGGATGCCTGCCAATGAACTCTTGTGACGCCTTGTAAAGAGAGCAAAAAAGGTTTCTACTAATAAGGCAAATAATTCGAAGGGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 337 161</canonical_bands>
                <polymorphic_bands>839 161</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGATATAGAATCCTGATAATTG</pcr_primer_p1>
		<pcr_primer_p2>ACAGTCAAGTCGTTCTCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGGATATAGAATCCTGATAATTGGAGCTAACCAAACAGTGTGATTTTATTATTGTCCGTTTTGCATGAATAGCAAATTAGCGATTCCAGATGGAGCATTTTTGGGTAAAAAATTAAACAAACGGAAGAGAAGGTTTAGGCTGAGGAAGGGGAAATATTGCGAAATTCGTATAGGAAGAGTGAAGAGAAAGAGACAACGACGGATGGAAAAGAAAATCAACATCAACAAGAAGAGAACGACTTGACTGT</canonical_amplicon>
		<polymorphic_amplicon>CGGATATAGAATCCTGATAATTGGAGCTAACCAAACAGTGTGATTTTATTATTGTCCGTTTTGCATGAATAGCAAATTAGCGATTCCAGATGGAGCATTTTTGGGTAAAAAATTAAACAAACGGAAGAGAAGGTTTAGGCTGAGGAAGGGGAMATATTGCGAAATTCGTATAGGAAGAGTGAAGAGAAAGAGACAACGACGGATGGAAAAGAAAATCAACATCAACAAGAAGAGAACGACTTGACTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4577</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>246580</contig_pos>
        <strand></strand>
        <context>TTGACTGTGA[A/G]CAACAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGATGGAAAAGAAAATCAACATCAACAAGAAGAGAACGACTTGACTGTGA</left_flank>
        <right_flank>CAACAAAAAAGAATCGTAGTTATTTTAACTTCAATTATCTCGGTTCCTTA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCTCTCTCTCCAGACACCCCGCTCACCGAGCTGTGCGTCGATTTCCGAATAATGTCAAACACATTTTTCTCATAGTTCTCGATTATGTCTGATGAACTAAAATTGATGGTTCCATTTTCAAATGCACCGTTTTTCTGGCACTTTGGACACTTTTGGTGGGGGTTTGATTTTGCGCAGGTTAAGCATATCGAATGACCACAGGAGCCTACAAATGCTCGCCGCGAATCGTTATCTGTAAAAGTTTATACGGATATAGAATCCTGATAATTGGAGCTAACCAAACAGTGTGATTTTATTATTGTCCGTTTTGCATGAATAGCAAATTAGCGATTCCAGATGGAGCATTTTTGGGTAAAAAATTAAACAAACGGAAGAGAAGGTTTAGGCTGAGGAAGGGGAAATATTGCGAAATTCGTATAGGAAGAGTGAAGAGAAAGAGACAACGACGGATGGAAAAGAAAATCAACATCAACAAGAAGAGAACGACTTGACTGTGAACAACAAAAAAGAATCGTAGTTATTTTAACTTCAATTATCTCGGTTCCTTATATTTCAAACCGATTTTATATGGTTTCAAACCGTTTACTTAGGTACCATATATCTCATTTTTGATAAAGGACTTGAAACAAATAGTGTCAACTGATGAAAAATAGATGATATTATAGTAAACAATTTATCAGTTGTCAAGCTTTTGATATCTTTCAGACGAATCGAACTAATTTTGTTGTCGACAAACAATATTGACGGCTTGAGAGGGCTTCTTTTTCAGCTTTTTCACCTTCATCGTTTATCACAACAATAGTTTCCAATGGTTCGGATGCCTGCCAATGAACTCTTGTGACGCCTTGTAAAGAGAGCAAAAAAGGTTTCTACTAATAAGGCAAATAATTCGAAGGGTGAAAAAACCGATTGAGTGGTAAAAAATAACTGATAATATCGAATTTTGTTCCCCCGCTTTTGTGTTTTTACGCCTAAATCGCTGTGTACTCTTTGCACCG</canonical>
            <polymorphic>TCTCTCTCTCTCCAGACACCCCGCTCACCGAGCTGTGCGTCGATTTCCGAATAATGTCAAACACATTTTTCTCATAGTTCTCGATTATGTCTGATGAACTAAAATTGATGGTTCCATTTTCAAATGCACCGTTTTTCTGGCACTTTGGACACTTTTGGTGGGGGTTTGATTTTGCGCAGGTTAAGCATATCGAATGACCACAGGAGCCTACAAATGCTCGCCGCGAATCGTTATCTGTAAAAGTTTATACGGATATAGAATCCTGATAATTGGAGCTAACCAAACAGTGTGATTTTATTATTGTCCGTTTTGCATGAATAGCAAATTAGCGATTCCAGATGGAGCATTTTTGGGTAAAAAATTAAACAAACGGAAGAGAAGGTTTAGGCTGAGGAAGGGGAAATATTGCGAAATTCGTATAGGAAGAGTGAAGAGAAAGAGACAACGACGGATGGAAAAGAAAATCAACATCAACAAGAAGAGAACGACTTGACTGTGARCAACAAAAAAGAATCGTAGTTATTTTAACTTCAATTATCTCGGTTCCTTATATTTCAAACCGATTTTATATGGTTTCAAACCGTTTACTTAGGTACCATATATCTCATTTTTGATAAAGGACTTGAAACAAATAGTGTCAACTGATGAAAAATAGATGATATTATAGTAAACAATTTATCAGTTGTCAAGCTTTTGATATCTTTCAGACGAATCGAACTAATTTTGTTGTCGACAAACAATATTGACGGCTTGAGAGGGCTTCTTTTTCAGCTTTTTCACCTTCATCGTTTATCACAACAATAGTTTCCAATGGTTCGGATGCCTGCCAATGAACTCTTGTGACGCCTTGTAAAGAGAGCAAAAAAGGTTTCTACTAATAAGGCAAATAATTCGAAGGGTGAAAAAACCGATTGAGTGGTAAAAAATAACTGATAATATCGAATTTTGTTCCCCCGCTTTTGTGTTTTTACGCCTAAATCGCTGTGTACTCTTTGCACCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 255 87 62 54 30 14</canonical_bands>
                <polymorphic_bands>585 255 62 54 30 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACGGATGGAAAAGAAAATC</pcr_primer_p1>
		<pcr_primer_p2>TTGTGATAAACGATGAAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>352</pcr_amplicon_size>
		<canonical_amplicon>GACGGATGGAAAAGAAAATCAACATCAACAAGAAGAGAACGACTTGACTGTGAACAACAAAAAAGAATCGTAGTTATTTTAACTTCAATTATCTCGGTTCCTTATATTTCAAACCGATTTTATATGGTTTCAAACCGTTTACTTAGGTACCATATATCTCATTTTTGATAAAGGACTTGAAACAAATAGTGTCAACTGATGAAAAATAGATGATATTATAGTAAACAATTTATCAGTTGTCAAGCTTTTGATATCTTTCAGACGAATCGAACTAATTTTGTTGTCGACAAACAATATTGACGGCTTGAGAGGGCTTCTTTTTCAGCTTTTTCACCTTCATCGTTTATCACAA</canonical_amplicon>
		<polymorphic_amplicon>GACGGATGGAAAAGAAAATCAACATCAACAAGAAGAGAACGACTTGACTGTGARCAACAAAAAAGAATCGTAGTTATTTTAACTTCAATTATCTCGGTTCCTTATATTTCAAACCGATTTTATATGGTTTCAAACCGTTTACTTAGGTACCATATATCTCATTTTTGATAAAGGACTTGAAACAAATAGTGTCAACTGATGAAAAATAGATGATATTATAGTAAACAATTTATCAGTTGTCAAGCTTTTGATATCTTTCAGACGAATCGAACTAATTTTGTTGTCGACAAACAATATTGACGGCTTGAGAGGGCTTCTTTTTCAGCTTTTTCACCTTCATCGTTTATCACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4579</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>246633</contig_pos>
        <strand></strand>
        <context>GTTCCTTATA[T/C]TTCAAACCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACAAAAAAGAATCGTAGTTATTTTAACTTCAATTATCTCGGTTCCTTATA</left_flank>
        <right_flank>TTCAAACCGATTTTATATGGTTTCAAACCGTTTACTTAGGTACCATATAT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTCAAACACATTTTTCTCATAGTTCTCGATTATGTCTGATGAACTAAAATTGATGGTTCCATTTTCAAATGCACCGTTTTTCTGGCACTTTGGACACTTTTGGTGGGGGTTTGATTTTGCGCAGGTTAAGCATATCGAATGACCACAGGAGCCTACAAATGCTCGCCGCGAATCGTTATCTGTAAAAGTTTATACGGATATAGAATCCTGATAATTGGAGCTAACCAAACAGTGTGATTTTATTATTGTCCGTTTTGCATGAATAGCAAATTAGCGATTCCAGATGGAGCATTTTTGGGTAAAAAATTAAACAAACGGAAGAGAAGGTTTAGGCTGAGGAAGGGGAAATATTGCGAAATTCGTATAGGAAGAGTGAAGAGAAAGAGACAACGACGGATGGAAAAGAAAATCAACATCAACAAGAAGAGAACGACTTGACTGTGAACAACAAAAAAGAATCGTAGTTATTTTAACTTCAATTATCTCGGTTCCTTATATTTCAAACCGATTTTATATGGTTTCAAACCGTTTACTTAGGTACCATATATCTCATTTTTGATAAAGGACTTGAAACAAATAGTGTCAACTGATGAAAAATAGATGATATTATAGTAAACAATTTATCAGTTGTCAAGCTTTTGATATCTTTCAGACGAATCGAACTAATTTTGTTGTCGACAAACAATATTGACGGCTTGAGAGGGCTTCTTTTTCAGCTTTTTCACCTTCATCGTTTATCACAACAATAGTTTCCAATGGTTCGGATGCCTGCCAATGAACTCTTGTGACGCCTTGTAAAGAGAGCAAAAAAGGTTTCTACTAATAAGGCAAATAATTCGAAGGGTGAAAAAACCGATTGAGTGGTAAAAAATAACTGATAATATCGAATTTTGTTCCCCCGCTTTTGTGTTTTTACGCCTAAATCGCTGTGTACTCTTTGCACCGCCGAATCGTTGCGCTTACGAATTACTGTAAACACTCTAATAGCATGACTTCCT</canonical>
            <polymorphic>ATGTCAAACACATTTTTCTCATAGTTCTCGATTATGTCTGATGAACTAAAATTGATGGTTCCATTTTCAAATGCACCGTTTTTCTGGCACTTTGGACACTTTTGGTGGGGGTTTGATTTTGCGCAGGTTAAGCATATCGAATGACCACAGGAGCCTACAAATGCTCGCCGCGAATCGTTATCTGTAAAAGTTTATACGGATATAGAATCCTGATAATTGGAGCTAACCAAACAGTGTGATTTTATTATTGTCCGTTTTGCATGAATAGCAAATTAGCGATTCCAGATGGAGCATTTTTGGGTAAAAAATTAAACAAACGGAAGAGAAGGTTTAGGCTGAGGAAGGGGAAATATTGCGAAATTCGTATAGGAAGAGTGAAGAGAAAGAGACAACGACGGATGGAAAAGAAAATCAACATCAACAAGAAGAGAACGACTTGACTGTGAACAACAAAAAAGAATCGTAGTTATTTTAACTTCAATTATCTCGGTTCCTTATAYTTCAAACCGATTTTATATGGTTTCAAACCGTTTACTTAGGTACCATATATCTCATTTTTGATAAAGGACTTGAAACAAATAGTGTCAACTGATGAAAAATAGATGATATTATAGTAAACAATTTATCAGTTGTCAAGCTTTTGATATCTTTCAGACGAATCGAACTAATTTTGTTGTCGACAAACAATATTGACGGCTTGAGAGGGCTTCTTTTTCAGCTTTTTCACCTTCATCGTTTATCACAACAATAGTTTCCAATGGTTCGGATGCCTGCCAATGAACTCTTGTGACGCCTTGTAAAGAGAGCAAAAAAGGTTTCTACTAATAAGGCAAATAATTCGAAGGGTGAAAAAACCGATTGAGTGGTAAAAAATAACTGATAATATCGAATTTTGTTCCCCCGCTTTTGTGTTTTTACGCCTAAATCGCTGTGTACTCTTTGCACCGCCGAATCGTTGCGCTTACGAATTACTGTAAACACTCTAATAGCATGACTTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAGAACGACTTGACTGTGA</pcr_primer_p1>
		<pcr_primer_p2>TTGTGATAAACGATGAAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>AAGAGAACGACTTGACTGTGAACAACAAAAAAGAATCGTAGTTATTTTAACTTCAATTATCTCGGTTCCTTATATTTCAAACCGATTTTATATGGTTTCAAACCGTTTACTTAGGTACCATATATCTCATTTTTGATAAAGGACTTGAAACAAATAGTGTCAACTGATGAAAAATAGATGATATTATAGTAAACAATTTATCAGTTGTCAAGCTTTTGATATCTTTCAGACGAATCGAACTAATTTTGTTGTCGACAAACAATATTGACGGCTTGAGAGGGCTTCTTTTTCAGCTTTTTCACCTTCATCGTTTATCACAA</canonical_amplicon>
		<polymorphic_amplicon>AAGAGAACGACTTGACTGTGAACAACAAAAAAGAATCGTAGTTATTTTAACTTCAATTATCTCGGTTCCTTATAYTTCAAACCGATTTTATATGGTTTCAAACCGTTTACTTAGGTACCATATATCTCATTTTTGATAAAGGACTTGAAACAAATAGTGTCAACTGATGAAAAATAGATGATATTATAGTAAACAATTTATCAGTTGTCAAGCTTTTGATATCTTTCAGACGAATCGAACTAATTTTGTTGTCGACAAACAATATTGACGGCTTGAGAGGGCTTCTTTTTCAGCTTTTTCACCTTCATCGTTTATCACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4580</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>254433</contig_pos>
        <strand>+</strand>
        <context>AAATCKAGAA[A/G]CAACTATTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGGCTAATTTTCAGTTCTTTAGACTAATTTTAGGCTTTAAAATCGAGAA</left_flank>
        <right_flank>CAACTATTTTCAGCACGATTTGACCTCCAAAATGCTGAAAATCCTACTTA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCGAACGATTCGGAGCGAATTCTGGAGATGACGTCGAGATTCTCGTCTCGCCATTTCCGTTGCTCACGCTCACGGTACAGGTGAATCGCCTGGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTTCCCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAAATTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGAGGTCTTCTGAATCCTCACATCATCCCAATGACTCTTCTCGTATCGAAGCCGTTTCATATGCGGTTCCACCTCGGTTAGCAGCGATTTTTCCTCGGCTTCAGTGATGAAGTCTCTGAATTTTTGATATTTGGCTAATTTTCAGTTCTTTAGACTAATTTTAGGCTTTAAAATCGAGAAGCAACTATTTTCAGCACGATTTGACCTCCAAAATGCTGAAAATCCTACTTAAAAAAGACTAAAAAACATTTTTCCAGCGGCGGGAGTCGAACCCACGACTTCAACCCAGTAGGCAGCCGCTTTGCCGGCTGCGCCAAATCTATCAAACTAAGGAAAGCTCACTTTTTCACATAACAAGCCTGCACGATTTCCTCCGCGAGCGCCGCCGGCCACTTTTGAATATTGTGGAACAGAATTAGGCTTTTTTGAAGCGCCCGTCGCGAAATTTGCATTTCTTCTAGAAAAATCGATATTGGCGGTTCTGAAATTTCTCTGAAAATCTATCTATGGCAATAACCGATGATTTTAAACCTAAAAAATACAAAATCACAGTGATTTTATTGTCATTTTTAGGGGAAAATTATGCATGCAATCACTAAAAAATAGACATTTTGAGCATTTTTGGGGGCATTTTTCGGGGGGAAAAAAAAGAGATTTTTTAGTATTTACAATCGATTTTTC</canonical>
            <polymorphic>CTCCGAACGATTCGGAGCGAATTCTGGAGATGACGTCGAGATTCTCGTCTCGCCATTTCCGTTGCTCACGCTCACGGTACAGGTGAATCGCCTGGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTTCCCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAAATTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGAGGTCTTCTGAATCCTCACATCATCCCAATGACTCTTCTCGTATCGAAGCCGTTTCATATGCGGTTCCACCTCGGTTAGCAGCGATTTTTCCTCGGCTTCAGTGATGAAGTCTCTGAATTTTTGATATTTGGCTAATTTTCAGTTCTTTAGACTAATTTTAGGCTTTAAAATCGAGAARCAACTATTTTCAGCACGATTTGACCTCCAAAATGCTGAAAATCCTACTTAAAAAAGACTAAAAAACATTTTTCCAGCGGCGGGAGTCGAACCCACGACTTCAACCCAGTAGGCAGCCGCTTTGCCGGCTGCGCCAAATCTATCAAACTAAGGAAAGCTCACTTTTTCACATAACAAGCCTGCACGATTTCCTCCGCGAGCGCCGCCGGCCACTTTTGAATATTGTGGAACAGAATTAGGCTTTTTTGAAGCGCCCGTCGCGAAATTTGCATTTCTTCTAGAAAAATCGATATTGGCGGTTCTGAAATTTCTCTGAAAATCTATCTATGGCAATAACCGATGATTTTAAACCTAAAAAATACAAAATCACAGTGATTTTATTGTCATTTTTAGGGGAAAATTATGCATGCAATCACTAAAAAATAGACATTTTGAGCATTTTTGGGGGCATTTTTCGGGGGGAAAAAAAAGAGATTTTTTAGTATTTACAATCGATTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTGATGAAGTCTCTGAATTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAAAGTGAGCTTTCCTTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAGTGATGAAGTCTCTGAATTTTTGATATTTGGCTAATTTTCAGTTCTTTAGACTAATTTTAGGCTTTAAAATCGAGAAGCAACTATTTTCAGCACGATTTGACCTCCAAAATGCTGAAAATCCTACTTAAAAAAGACTAAAAAACATTTTTCCAGCGGCGGGAGTCGAACCCACGACTTCAACCCAGTAGGCAGCCGCTTTGCCGGCTGCGCCAAATCTATCAAACTAAGGAAAGCTCACTTTTTC</canonical_amplicon>
		<polymorphic_amplicon>CAGTGATGAAGTCTCTGAATTTTTGATATTTGGCTAATTTTCAGTTCTTTAGACTAATTTTAGGCTTTAAAATCGAGAARCAACTATTTTCAGCACGATTTGACCTCCAAAATGCTGAAAATCCTACTTAAAAAAGACTAAAAAACATTTTTCCAGCGGCGGGAGTCGAACCCACGACTTCAACCCAGTAGGCAGCCGCTTTGCCGGCTGCGCCAAATCTATCAAACTAAGGAAAGCTCACTTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4581</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>254428</contig_pos>
        <strand>+</strand>
        <context>CTTTRAAATC[G/T]AGAARCAACT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATATTTGGCTAATTTTCAGTTCTTTAGACTAATTTTAGGCTTTAAAATC</left_flank>
        <right_flank>AGAAGCAACTATTTTCAGCACGATTTGACCTCCAAAATGCTGAAAATCCT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGGCTCCGAACGATTCGGAGCGAATTCTGGAGATGACGTCGAGATTCTCGTCTCGCCATTTCCGTTGCTCACGCTCACGGTACAGGTGAATCGCCTGGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTTCCCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAAATTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGAGGTCTTCTGAATCCTCACATCATCCCAATGACTCTTCTCGTATCGAAGCCGTTTCATATGCGGTTCCACCTCGGTTAGCAGCGATTTTTCCTCGGCTTCAGTGATGAAGTCTCTGAATTTTTGATATTTGGCTAATTTTCAGTTCTTTAGACTAATTTTAGGCTTTAAAATCGAGAAGCAACTATTTTCAGCACGATTTGACCTCCAAAATGCTGAAAATCCTACTTAAAAAAGACTAAAAAACATTTTTCCAGCGGCGGGAGTCGAACCCACGACTTCAACCCAGTAGGCAGCCGCTTTGCCGGCTGCGCCAAATCTATCAAACTAAGGAAAGCTCACTTTTTCACATAACAAGCCTGCACGATTTCCTCCGCGAGCGCCGCCGGCCACTTTTGAATATTGTGGAACAGAATTAGGCTTTTTTGAAGCGCCCGTCGCGAAATTTGCATTTCTTCTAGAAAAATCGATATTGGCGGTTCTGAAATTTCTCTGAAAATCTATCTATGGCAATAACCGATGATTTTAAACCTAAAAAATACAAAATCACAGTGATTTTATTGTCATTTTTAGGGGAAAATTATGCATGCAATCACTAAAAAATAGACATTTTGAGCATTTTTGGGGGCATTTTTCGGGGGGAAAAAAAAGAGATTTTTTAGTATTTACAATCGAT</canonical>
            <polymorphic>ATTGGCTCCGAACGATTCGGAGCGAATTCTGGAGATGACGTCGAGATTCTCGTCTCGCCATTTCCGTTGCTCACGCTCACGGTACAGGTGAATCGCCTGGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTTCCCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAAATTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGAGGTCTTCTGAATCCTCACATCATCCCAATGACTCTTCTCGTATCGAAGCCGTTTCATATGCGGTTCCACCTCGGTTAGCAGCGATTTTTCCTCGGCTTCAGTGATGAAGTCTCTGAATTTTTGATATTTGGCTAATTTTCAGTTCTTTAGACTAATTTTAGGCTTTAAAATCKAGAAGCAACTATTTTCAGCACGATTTGACCTCCAAAATGCTGAAAATCCTACTTAAAAAAGACTAAAAAACATTTTTCCAGCGGCGGGAGTCGAACCCACGACTTCAACCCAGTAGGCAGCCGCTTTGCCGGCTGCGCCAAATCTATCAAACTAAGGAAAGCTCACTTTTTCACATAACAAGCCTGCACGATTTCCTCCGCGAGCGCCGCCGGCCACTTTTGAATATTGTGGAACAGAATTAGGCTTTTTTGAAGCGCCCGTCGCGAAATTTGCATTTCTTCTAGAAAAATCGATATTGGCGGTTCTGAAATTTCTCTGAAAATCTATCTATGGCAATAACCGATGATTTTAAACCTAAAAAATACAAAATCACAGTGATTTTATTGTCATTTTTAGGGGAAAATTATGCATGCAATCACTAAAAAATAGACATTTTGAGCATTTTTGGGGGCATTTTTCGGGGGGAAAAAAAAGAGATTTTTTAGTATTTACAATCGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>205 200 128 106 93 93 79 51 42 3</canonical_bands>
                <polymorphic_bands>221 205 200 106 93 79 51 42 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTGATGAAGTCTCTGAATTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAAAGTGAGCTTTCCTTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAGTGATGAAGTCTCTGAATTTTTGATATTTGGCTAATTTTCAGTTCTTTAGACTAATTTTAGGCTTTAAAATCGAGAAGCAACTATTTTCAGCACGATTTGACCTCCAAAATGCTGAAAATCCTACTTAAAAAAGACTAAAAAACATTTTTCCAGCGGCGGGAGTCGAACCCACGACTTCAACCCAGTAGGCAGCCGCTTTGCCGGCTGCGCCAAATCTATCAAACTAAGGAAAGCTCACTTTTTC</canonical_amplicon>
		<polymorphic_amplicon>CAGTGATGAAGTCTCTGAATTTTTGATATTTGGCTAATTTTCAGTTCTTTAGACTAATTTTAGGCTTTAAAATCKAGAAGCAACTATTTTCAGCACGATTTGACCTCCAAAATGCTGAAAATCCTACTTAAAAAAGACTAAAAAACATTTTTCCAGCGGCGGGAGTCGAACCCACGACTTCAACCCAGTAGGCAGCCGCTTTGCCGGCTGCGCCAAATCTATCAAACTAAGGAAAGCTCACTTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4582</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>254422</contig_pos>
        <strand>+</strand>
        <context>TTTAGGCTTT[A/G]AAATCKAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTTGATATTTGGCTAATTTTCAGTTCTTTAGACTAATTTTAGGCTTT</left_flank>
        <right_flank>AAATCGAGAAGCAACTATTTTCAGCACGATTTGACCTCCAAAATGCTGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCGTATTGGCTCCGAACGATTCGGAGCGAATTCTGGAGATGACGTCGAGATTCTCGTCTCGCCATTTCCGTTGCTCACGCTCACGGTACAGGTGAATCGCCTGGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTTCCCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAAATTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGAGGTCTTCTGAATCCTCACATCATCCCAATGACTCTTCTCGTATCGAAGCCGTTTCATATGCGGTTCCACCTCGGTTAGCAGCGATTTTTCCTCGGCTTCAGTGATGAAGTCTCTGAATTTTTGATATTTGGCTAATTTTCAGTTCTTTAGACTAATTTTAGGCTTTAAAATCGAGAAGCAACTATTTTCAGCACGATTTGACCTCCAAAATGCTGAAAATCCTACTTAAAAAAGACTAAAAAACATTTTTCCAGCGGCGGGAGTCGAACCCACGACTTCAACCCAGTAGGCAGCCGCTTTGCCGGCTGCGCCAAATCTATCAAACTAAGGAAAGCTCACTTTTTCACATAACAAGCCTGCACGATTTCCTCCGCGAGCGCCGCCGGCCACTTTTGAATATTGTGGAACAGAATTAGGCTTTTTTGAAGCGCCCGTCGCGAAATTTGCATTTCTTCTAGAAAAATCGATATTGGCGGTTCTGAAATTTCTCTGAAAATCTATCTATGGCAATAACCGATGATTTTAAACCTAAAAAATACAAAATCACAGTGATTTTATTGTCATTTTTAGGGGAAAATTATGCATGCAATCACTAAAAAATAGACATTTTGAGCATTTTTGGGGGCATTTTTCGGGGGGAAAAAAAAGAGATTTTTTAGTATTTACA</canonical>
            <polymorphic>CTCCGTATTGGCTCCGAACGATTCGGAGCGAATTCTGGAGATGACGTCGAGATTCTCGTCTCGCCATTTCCGTTGCTCACGCTCACGGTACAGGTGAATCGCCTGGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTTCCCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAAATTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGAGGTCTTCTGAATCCTCACATCATCCCAATGACTCTTCTCGTATCGAAGCCGTTTCATATGCGGTTCCACCTCGGTTAGCAGCGATTTTTCCTCGGCTTCAGTGATGAAGTCTCTGAATTTTTGATATTTGGCTAATTTTCAGTTCTTTAGACTAATTTTAGGCTTTRAAATCGAGAAGCAACTATTTTCAGCACGATTTGACCTCCAAAATGCTGAAAATCCTACTTAAAAAAGACTAAAAAACATTTTTCCAGCGGCGGGAGTCGAACCCACGACTTCAACCCAGTAGGCAGCCGCTTTGCCGGCTGCGCCAAATCTATCAAACTAAGGAAAGCTCACTTTTTCACATAACAAGCCTGCACGATTTCCTCCGCGAGCGCCGCCGGCCACTTTTGAATATTGTGGAACAGAATTAGGCTTTTTTGAAGCGCCCGTCGCGAAATTTGCATTTCTTCTAGAAAAATCGATATTGGCGGTTCTGAAATTTCTCTGAAAATCTATCTATGGCAATAACCGATGATTTTAAACCTAAAAAATACAAAATCACAGTGATTTTATTGTCATTTTTAGGGGAAAATTATGCATGCAATCACTAAAAAATAGACATTTTGAGCATTTTTGGGGGCATTTTTCGGGGGGAAAAAAAAGAGATTTTTTAGTATTTACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 358 143</canonical_bands>
                <polymorphic_bands>857 143</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>498 297 144 61</canonical_bands>
                <polymorphic_bands>559 297 144</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTGATGAAGTCTCTGAATTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAAAGTGAGCTTTCCTTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAGTGATGAAGTCTCTGAATTTTTGATATTTGGCTAATTTTCAGTTCTTTAGACTAATTTTAGGCTTTAAAATCGAGAAGCAACTATTTTCAGCACGATTTGACCTCCAAAATGCTGAAAATCCTACTTAAAAAAGACTAAAAAACATTTTTCCAGCGGCGGGAGTCGAACCCACGACTTCAACCCAGTAGGCAGCCGCTTTGCCGGCTGCGCCAAATCTATCAAACTAAGGAAAGCTCACTTTTTC</canonical_amplicon>
		<polymorphic_amplicon>CAGTGATGAAGTCTCTGAATTTTTGATATTTGGCTAATTTTCAGTTCTTTAGACTAATTTTAGGCTTTRAAATCGAGAAGCAACTATTTTCAGCACGATTTGACCTCCAAAATGCTGAAAATCCTACTTAAAAAAGACTAAAAAACATTTTTCCAGCGGCGGGAGTCGAACCCACGACTTCAACCCAGTAGGCAGCCGCTTTGCCGGCTGCGCCAAATCTATCAAACTAAGGAAAGCTCACTTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4583</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>254256</contig_pos>
        <strand>+</strand>
        <context>GATGACGTGA[C/G]GTCTTCTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAAAAAAATTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGA</left_flank>
        <right_flank>GTCTTCTGAATCCTCACATCATCCCAATGACTCTTCTCGTATCGAAGCCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAGCAAATAAAAATTTTTTTGAAAATTGAAAATTTAAAAAAAAAATTTTTTTTCGAAAATTTTTAAAAATTCAAACTTTTTCGATTTCTCACCCGAATCGAGTCAATGTGCGGTTTGATGACACCGTCTTTGTGCAAATCCAGAATGTGCACGTACGTCAAGTGCTCCGTATTGGCTCCGAACGATTCGGAGCGAATTCTGGAGATGACGTCGAGATTCTCGTCTCGCCATTTCCGTTGCTCACGCTCACGGTACAGGTGAATCGCCTGGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTTCCCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAAATTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGAGGTCTTCTGAATCCTCACATCATCCCAATGACTCTTCTCGTATCGAAGCCGTTTCATATGCGGTTCCACCTCGGTTAGCAGCGATTTTTCCTCGGCTTCAGTGATGAAGTCTCTGAATTTTTGATATTTGGCTAATTTTCAGTTCTTTAGACTAATTTTAGGCTTTAAAATCGAGAAGCAACTATTTTCAGCACGATTTGACCTCCAAAATGCTGAAAATCCTACTTAAAAAAGACTAAAAAACATTTTTCCAGCGGCGGGAGTCGAACCCACGACTTCAACCCAGTAGGCAGCCGCTTTGCCGGCTGCGCCAAATCTATCAAACTAAGGAAAGCTCACTTTTTCACATAACAAGCCTGCACGATTTCCTCCGCGAGCGCCGCCGGCCACTTTTGAATATTGTGGAACAGAATTAGGCTTTTTTGAAGCGCCCGTCGCGAAATTTGCATTTCTTCTAGAAAAATCGATATTGGCGGTTCTGAAATTTCTCTGAAAATCTAT</canonical>
            <polymorphic>TTCAGCAAATAAAAATTTTTTTGAAAATTGAAAATTTAAAAAAAAAATTTTTTTTCGAAAATTTTTAAAAATTCAAACTTTTTCGATTTCTCACCCGAATCGAGTCAATGTGCGGTTTGATGACACCGTCTTTGTGCAAATCCAGAATGTGCACGTACGTCAAGTGCTCCGTATTGGCTCCGAACGATTCGGAGCGAATTCTGGAGATGACGTCGAGATTCTCGTCTCGCCATTTCCGTTGCTCACGCTCACGGTACAGGTGAATCGCCTGGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTTCCCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAAATTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGASGTCTTCTGAATCCTCACATCATCCCAATGACTCTTCTCGTATCGAAGCCGTTTCATATGCGGTTCCACCTCGGTTAGCAGCGATTTTTCCTCGGCTTCAGTGATGAAGTCTCTGAATTTTTGATATTTGGCTAATTTTCAGTTCTTTAGACTAATTTTAGGCTTTAAAATCGAGAAGCAACTATTTTCAGCACGATTTGACCTCCAAAATGCTGAAAATCCTACTTAAAAAAGACTAAAAAACATTTTTCCAGCGGCGGGAGTCGAACCCACGACTTCAACCCAGTAGGCAGCCGCTTTGCCGGCTGCGCCAAATCTATCAAACTAAGGAAAGCTCACTTTTTCACATAACAAGCCTGCACGATTTCCTCCGCGAGCGCCGCCGGCCACTTTTGAATATTGTGGAACAGAATTAGGCTTTTTTGAAGCGCCCGTCGCGAAATTTGCATTTCTTCTAGAAAAATCGATATTGGCGGTTCTGAAATTTCTCTGAAAATCTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAATTTTTAGAAGACGTCAAT</pcr_primer_p1>
		<pcr_primer_p2>CAAAAATTCAGAGACTTCATCAC</pcr_primer_p2>
		<pcr_amplicon_size>352</pcr_amplicon_size>
		<canonical_amplicon>GGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTTCCCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAAATTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGAGGTCTTCTGAATCCTCACATCATCCCAATGACTCTTCTCGTATCGAAGCCGTTTCATATGCGGTTCCACCTCGGTTAGCAGCGATTTTTCCTCGGCTTCAGTGATGAAGTCTCTGAATTTTTG</canonical_amplicon>
		<polymorphic_amplicon>GGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTTCCCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAAATTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGASGTCTTCTGAATCCTCACATCATCCCAATGACTCTTCTCGTATCGAAGCCGTTTCATATGCGGTTCCACCTCGGTTAGCAGCGATTTTTCCTCGGCTTCAGTGATGAAGTCTCTGAATTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4584</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>254214</contig_pos>
        <strand></strand>
        <context>GAAAAAAAAA[A/T]TTTTTTTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAA</left_flank>
        <right_flank>TTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGAGGTCTTCTG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGACGTCGCCGCAGTACTGGAATATTGATTTTATCGATTTTTCAGCAAATAAAAATTTTTTTGAAAATTGAAAATTTAAAAAAAAAATTTTTTTTCGAAAATTTTTAAAAATTCAAACTTTTTCGATTTCTCACCCGAATCGAGTCAATGTGCGGTTTGATGACACCGTCTTTGTGCAAATCCAGAATGTGCACGTACGTCAAGTGCTCCGTATTGGCTCCGAACGATTCGGAGCGAATTCTGGAGATGACGTCGAGATTCTCGTCTCGCCATTTCCGTTGCTCACGCTCACGGTACAGGTGAATCGCCTGGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTTCCCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAAATTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGAGGTCTTCTGAATCCTCACATCATCCCAATGACTCTTCTCGTATCGAAGCCGTTTCATATGCGGTTCCACCTCGGTTAGCAGCGATTTTTCCTCGGCTTCAGTGATGAAGTCTCTGAATTTTTGATATTTGGCTAATTTTCAGTTCTTTAGACTAATTTTAGGCTTTAAAATCGAGAAGCAACTATTTTCAGCACGATTTGACCTCCAAAATGCTGAAAATCCTACTTAAAAAAGACTAAAAAACATTTTTCCAGCGGCGGGAGTCGAACCCACGACTTCAACCCAGTAGGCAGCCGCTTTGCCGGCTGCGCCAAATCTATCAAACTAAGGAAAGCTCACTTTTTCACATAACAAGCCTGCACGATTTCCTCCGCGAGCGCCGCCGGCCACTTTTGAATATTGTGGAACAGAATTAGGCTTTTTTGAAGCGCCCGTCGCGAAATTTGCATTTCTTCTAGA</canonical>
            <polymorphic>GATGACGTCGCCGCAGTACTGGAATATTGATTTTATCGATTTTTCAGCAAATAAAAATTTTTTTGAAAATTGAAAATTTAAAAAAAAAATTTTTTTTCGAAAATTTTTAAAAATTCAAACTTTTTCGATTTCTCACCCGAATCGAGTCAATGTGCGGTTTGATGACACCGTCTTTGTGCAAATCCAGAATGTGCACGTACGTCAAGTGCTCCGTATTGGCTCCGAACGATTCGGAGCGAATTCTGGAGATGACGTCGAGATTCTCGTCTCGCCATTTCCGTTGCTCACGCTCACGGTACAGGTGAATCGCCTGGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTTCCCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAAWTTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGAGGTCTTCTGAATCCTCACATCATCCCAATGACTCTTCTCGTATCGAAGCCGTTTCATATGCGGTTCCACCTCGGTTAGCAGCGATTTTTCCTCGGCTTCAGTGATGAAGTCTCTGAATTTTTGATATTTGGCTAATTTTCAGTTCTTTAGACTAATTTTAGGCTTTAAAATCGAGAAGCAACTATTTTCAGCACGATTTGACCTCCAAAATGCTGAAAATCCTACTTAAAAAAGACTAAAAAACATTTTTCCAGCGGCGGGAGTCGAACCCACGACTTCAACCCAGTAGGCAGCCGCTTTGCCGGCTGCGCCAAATCTATCAAACTAAGGAAAGCTCACTTTTTCACATAACAAGCCTGCACGATTTCCTCCGCGAGCGCCGCCGGCCACTTTTGAATATTGTGGAACAGAATTAGGCTTTTTTGAAGCGCCCGTCGCGAAATTTGCATTTCTTCTAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>325 134 127 77 55 29 28 24 24 24 22 19 19 18 15 14 13 13 10 10</canonical_bands>
                <polymorphic_bands>325 134 127 77 55 48 29 28 24 22 19 19 18 15 14 13 13 10 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>257 134 127 77 55 30 29 28 24 24 22 20 19 18 18 17 15 14 13 13 12 10 10 7 7</canonical_bands>
                <polymorphic_bands>257 134 127 77 55 48 30 29 28 22 20 19 18 18 17 15 14 13 13 12 10 10 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAATTTTTAGAAGACGTCAAT</pcr_primer_p1>
		<pcr_primer_p2>ATGATGTGAGGATTCAGAAGAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTTCCCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAAATTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGAGGTCTTCTGAATCCTCACATCAT</canonical_amplicon>
		<polymorphic_amplicon>GGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTTCCCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAAWTTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGAGGTCTTCTGAATCCTCACATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4585</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>254164</contig_pos>
        <strand></strand>
        <context>CTTCTAAATT[T/A]WCCTTCACAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATT</left_flank>
        <right_flank>CCCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTTATGCCGGAGCCGCATGATGGCGTCGGAGAGCAAGGAGACACCGGTGATGACGTCGCCGCAGTACTGGAATATTGATTTTATCGATTTTTCAGCAAATAAAAATTTTTTTGAAAATTGAAAATTTAAAAAAAAAATTTTTTTTCGAAAATTTTTAAAAATTCAAACTTTTTCGATTTCTCACCCGAATCGAGTCAATGTGCGGTTTGATGACACCGTCTTTGTGCAAATCCAGAATGTGCACGTACGTCAAGTGCTCCGTATTGGCTCCGAACGATTCGGAGCGAATTCTGGAGATGACGTCGAGATTCTCGTCTCGCCATTTCCGTTGCTCACGCTCACGGTACAGGTGAATCGCCTGGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTTCCCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAAATTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGAGGTCTTCTGAATCCTCACATCATCCCAATGACTCTTCTCGTATCGAAGCCGTTTCATATGCGGTTCCACCTCGGTTAGCAGCGATTTTTCCTCGGCTTCAGTGATGAAGTCTCTGAATTTTTGATATTTGGCTAATTTTCAGTTCTTTAGACTAATTTTAGGCTTTAAAATCGAGAAGCAACTATTTTCAGCACGATTTGACCTCCAAAATGCTGAAAATCCTACTTAAAAAAGACTAAAAAACATTTTTCCAGCGGCGGGAGTCGAACCCACGACTTCAACCCAGTAGGCAGCCGCTTTGCCGGCTGCGCCAAATCTATCAAACTAAGGAAAGCTCACTTTTTCACATAACAAGCCTGCACGATTTCCTCCGCGAGCGCCGCCGGCCACTTTTGAATATTGTGGAACA</canonical>
            <polymorphic>TCCTTATGCCGGAGCCGCATGATGGCGTCGGAGAGCAAGGAGACACCGGTGATGACGTCGCCGCAGTACTGGAATATTGATTTTATCGATTTTTCAGCAAATAAAAATTTTTTTGAAAATTGAAAATTTAAAAAAAAAATTTTTTTTCGAAAATTTTTAAAAATTCAAACTTTTTCGATTTCTCACCCGAATCGAGTCAATGTGCGGTTTGATGACACCGTCTTTGTGCAAATCCAGAATGTGCACGTACGTCAAGTGCTCCGTATTGGCTCCGAACGATTCGGAGCGAATTCTGGAGATGACGTCGAGATTCTCGTCTCGCCATTTCCGTTGCTCACGCTCACGGTACAGGTGAATCGCCTGGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTWCCCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAAATTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGAGGTCTTCTGAATCCTCACATCATCCCAATGACTCTTCTCGTATCGAAGCCGTTTCATATGCGGTTCCACCTCGGTTAGCAGCGATTTTTCCTCGGCTTCAGTGATGAAGTCTCTGAATTTTTGATATTTGGCTAATTTTCAGTTCTTTAGACTAATTTTAGGCTTTAAAATCGAGAAGCAACTATTTTCAGCACGATTTGACCTCCAAAATGCTGAAAATCCTACTTAAAAAAGACTAAAAAACATTTTTCCAGCGGCGGGAGTCGAACCCACGACTTCAACCCAGTAGGCAGCCGCTTTGCCGGCTGCGCCAAATCTATCAAACTAAGGAAAGCTCACTTTTTCACATAACAAGCCTGCACGATTTCCTCCGCGAGCGCCGCCGGCCACTTTTGAATATTGTGGAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>294 134 127 105 77 29 28 24 24 24 22 19 18 15 14 13 13 10 10</canonical_bands>
                <polymorphic_bands>294 134 127 105 77 57 24 24 24 22 19 18 15 14 13 13 10 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAATTTTTAGAAGACGTCAAT</pcr_primer_p1>
		<pcr_primer_p2>ATGATGTGAGGATTCAGAAGAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTTCCCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAAATTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGAGGTCTTCTGAATCCTCACATCAT</canonical_amplicon>
		<polymorphic_amplicon>GGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTWCCCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAAATTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGAGGTCTTCTGAATCCTCACATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4592</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>30854</contig_pos>
        <strand></strand>
        <context>ATAGTTTTTC[G/A]AGATTCATCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TATTTGGTGGCATCTACAGTTAAACCATCGTAATCAAAGCATAGTTTTTC</left_flank>
        <right_flank>AGATTCATCGGAGTGCTTTTTTCGATTCCTCGAATTGTCGGACATCGATA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAAATTTGGTTTAGTGCATCCTGGGGCTCTCCATGAGTCTTCACTTTGACCGGATAGATTTCTAGACTCTCTGGTAGTCTATAAATCGCTGAAATATTCTCATGGAAGGTGTTGTCGAACTCCAAAAGGCTGGTATTTCTTCTGAGTTTCGTTCCAAAAAGTTCGCTAGCGAATTTCTTCTGAGCTCGATGAAGTGAAAGATTTGAATAGTCCTTTTTTAGAAGATAACATTTCTCATCCTTATCTCTCTTGATTTTTAAGATGAATTCCTGGGGAAAAGGGGGCTCCAAACTCCCAACATCTCGTTTTCGGTACCAGTCTTCTGGGAATGGGAACAGCAAATCGCCTGGTAAGGGCGGCAAGTTCCGCGGTAAACGGCCTGGTAAGACTTCTAGACGCATTTGTTCATACCAATTTTCGTTTTCCCACGATTTCGGTTTTATTACATATTTGGTGGCATCTACAGTTAAACCATCGTAATCAAAGCATAGTTTTTCGAGATTCATCGGAGTGCTTTTTTCGATTCCTCGAATTGTCGGACATCGATAGCGATTTGGCTTCTGAAACCTCGATTTTTGAATTTGGCTTGTCAAGAGCTTCAAAATGAGCCTACACACGACTAGATTTGCTATTCTTTGATTTTTCGGGTTGCGTCGCGGTCGTGCGTCGCGTGTTAGGCATCAAATTTGAAAGTTGACCGATTCTAGACGTGATTAGTCTCATTTTGAAGCTCAGAACCTCAAAAATTTGAAAATTTCGACATCATGCTTCGAAAACTACTACATTTTGAGCTTCGGCATAAAATGAGATATTCAGATATTCGAAATTTTCAAATATCTTCTTTCCAAATTGACCAATCGTCACGAATTTAAGTTTTTTGAGTTTTTCACGCTTGTAGCTTTAAAATGAGCCTAAACACGACTAGATTCGCTCTACCTTGATTTTTTGGTGCGTCGCGGTCGTGCGTCGCGTGTTAGGCATCAAATTTGAAAGTTGAC</canonical>
            <polymorphic>CCAAAATTTGGTTTAGTGCATCCTGGGGCTCTCCATGAGTCTTCACTTTGACCGGATAGATTTCTAGACTCTCTGGTAGTCTATAAATCGCTGAAATATTCTCATGGAAGGTGTTGTCGAACTCCAAAAGGCTGGTATTTCTTCTGAGTTTCGTTCCAAAAAGTTCGCTAGCGAATTTCTTCTGAGCTCGATGAAGTGAAAGATTTGAATAGTCCTTTTTTAGAAGATAACATTTCTCATCCTTATCTCTCTTGATTTTTAAGATGAATTCCTGGGGAAAAGGGGGCTCCAAACTCCCAACATCTCGTTTTCGGTACCAGTCTTCTGGGAATGGGAACAGCAAATCGCCTGGTAAGGGCGGCAAGTTCCGCGGTAAACGGCCTGGTAAGACTTCTAGACGCATTTGTTCATACCAATTTTCGTTTTCCCACGATTTCGGTTTTATTACATATTTGGTGGCATCTACAGTTAAACCATCGTAATCAAAGCATAGTTTTTCRAGATTCATCGGAGTGCTTTTTTCGATTCCTCGAATTGTCGGACATCGATAGCGATTTGGCTTCTGAAACCTCGATTTTTGAATTTGGCTTGTCAAGAGCTTCAAAATGAGCCTACACACGACTAGATTTGCTATTCTTTGATTTTTCGGGTTGCGTCGCGGTCGTGCGTCGCGTGTTAGGCATCAAATTTGAAAGTTGACCGATTCTAGACGTGATTAGTCTCATTTTGAAGCTCAGAACCTCAAAAATTTGAAAATTTCGACATCATGCTTCGAAAACTACTACATTTTGAGCTTCGGCATAAAATGAGATATTCAGATATTCGAAATTTTCAAATATCTTCTTTCCAAATTGACCAATCGTCACGAATTTAAGTTTTTTGAGTTTTTCACGCTTGTAGCTTTAAAATGAGCCTAAACACGACTAGATTCGCTCTACCTTGATTTTTTGGTGCGTCGCGGTCGTGCGTCGCGTGTTAGGCATCAAATTTGAAAGTTGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>310 188 176 118 71 51 26 24 15 13 8</canonical_bands>
                <polymorphic_bands>334 188 176 118 71 51 26 15 13 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTCGTTTTCGGTACCAGT</pcr_primer_p1>
		<pcr_primer_p2>CTATCGATGTCCGACAATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTCGTTTTCGGTACCAGTCTTCTGGGAATGGGAACAGCAAATCGCCTGGTAAGGGCGGCAAGTTCCGCGGTAAACGGCCTGGTAAGACTTCTAGACGCATTTGTTCATACCAATTTTCGTTTTCCCACGATTTCGGTTTTATTACATATTTGGTGGCATCTACAGTTAAACCATCGTAATCAAAGCATAGTTTTTCGAGATTCATCGGAGTGCTTTTTTCGATTCCTCGAATTGTCGGACATCGATAG</canonical_amplicon>
		<polymorphic_amplicon>ATCTCGTTTTCGGTACCAGTCTTCTGGGAATGGGAACAGCAAATCGCCTGGTAAGGGCGGCAAGTTCCGCGGTAAACGGCCTGGTAAGACTTCTAGACGCATTTGTTCATACCAATTTTCGTTTTCCCACGATTTCGGTTTTATTACATATTTGGTGGCATCTACAGTTAAACCATCGTAATCAAAGCATAGTTTTTCRAGATTCATCGGAGTGCTTTTTTCGATTCCTCGAATTGTCGGACATCGATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4593</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>30800</contig_pos>
        <strand></strand>
        <context>TCGGTTTTAT[T/A]ACATATTTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGACGCATTTGTTCATACCAATTTTCGTTTTCCCACGATTTCGGTTTTAT</left_flank>
        <right_flank>ACATATTTGGTGGCATCTACAGTTAAACCATCGTAATCAAAGCATAGTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGGGTCCACCCCTTGTAACGGGAGGGAGAAAACTTGAATTTCATGGTTTGGCGCCAAAATTTGGTTTAGTGCATCCTGGGGCTCTCCATGAGTCTTCACTTTGACCGGATAGATTTCTAGACTCTCTGGTAGTCTATAAATCGCTGAAATATTCTCATGGAAGGTGTTGTCGAACTCCAAAAGGCTGGTATTTCTTCTGAGTTTCGTTCCAAAAAGTTCGCTAGCGAATTTCTTCTGAGCTCGATGAAGTGAAAGATTTGAATAGTCCTTTTTTAGAAGATAACATTTCTCATCCTTATCTCTCTTGATTTTTAAGATGAATTCCTGGGGAAAAGGGGGCTCCAAACTCCCAACATCTCGTTTTCGGTACCAGTCTTCTGGGAATGGGAACAGCAAATCGCCTGGTAAGGGCGGCAAGTTCCGCGGTAAACGGCCTGGTAAGACTTCTAGACGCATTTGTTCATACCAATTTTCGTTTTCCCACGATTTCGGTTTTATTACATATTTGGTGGCATCTACAGTTAAACCATCGTAATCAAAGCATAGTTTTTCGAGATTCATCGGAGTGCTTTTTTCGATTCCTCGAATTGTCGGACATCGATAGCGATTTGGCTTCTGAAACCTCGATTTTTGAATTTGGCTTGTCAAGAGCTTCAAAATGAGCCTACACACGACTAGATTTGCTATTCTTTGATTTTTCGGGTTGCGTCGCGGTCGTGCGTCGCGTGTTAGGCATCAAATTTGAAAGTTGACCGATTCTAGACGTGATTAGTCTCATTTTGAAGCTCAGAACCTCAAAAATTTGAAAATTTCGACATCATGCTTCGAAAACTACTACATTTTGAGCTTCGGCATAAAATGAGATATTCAGATATTCGAAATTTTCAAATATCTTCTTTCCAAATTGACCAATCGTCACGAATTTAAGTTTTTTGAGTTTTTCACGCTTGTAGCTTTAAAATGAGCCTAAACACGACTAGATTCGCTCTACCTTGATTT</canonical>
            <polymorphic>CAGGGTCCACCCCTTGTAACGGGAGGGAGAAAACTTGAATTTCATGGTTTGGCGCCAAAATTTGGTTTAGTGCATCCTGGGGCTCTCCATGAGTCTTCACTTTGACCGGATAGATTTCTAGACTCTCTGGTAGTCTATAAATCGCTGAAATATTCTCATGGAAGGTGTTGTCGAACTCCAAAAGGCTGGTATTTCTTCTGAGTTTCGTTCCAAAAAGTTCGCTAGCGAATTTCTTCTGAGCTCGATGAAGTGAAAGATTTGAATAGTCCTTTTTTAGAAGATAACATTTCTCATCCTTATCTCTCTTGATTTTTAAGATGAATTCCTGGGGAAAAGGGGGCTCCAAACTCCCAACATCTCGTTTTCGGTACCAGTCTTCTGGGAATGGGAACAGCAAATCGCCTGGTAAGGGCGGCAAGTTCCGCGGTAAACGGCCTGGTAAGACTTCTAGACGCATTTGTTCATACCAATTTTCGTTTTCCCACGATTTCGGTTTTATWACATATTTGGTGGCATCTACAGTTAAACCATCGTAATCAAAGCATAGTTTTTCGAGATTCATCGGAGTGCTTTTTTCGATTCCTCGAATTGTCGGACATCGATAGCGATTTGGCTTCTGAAACCTCGATTTTTGAATTTGGCTTGTCAAGAGCTTCAAAATGAGCCTACACACGACTAGATTTGCTATTCTTTGATTTTTCGGGTTGCGTCGCGGTCGTGCGTCGCGTGTTAGGCATCAAATTTGAAAGTTGACCGATTCTAGACGTGATTAGTCTCATTTTGAAGCTCAGAACCTCAAAAATTTGAAAATTTCGACATCATGCTTCGAAAACTACTACATTTTGAGCTTCGGCATAAAATGAGATATTCAGATATTCGAAATTTTCAAATATCTTCTTTCCAAATTGACCAATCGTCACGAATTTAAGTTTTTTGAGTTTTTCACGCTTGTAGCTTTAAAATGAGCCTAAACACGACTAGATTCGCTCTACCTTGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTCGTTTTCGGTACCAGT</pcr_primer_p1>
		<pcr_primer_p2>CTATCGATGTCCGACAATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTCGTTTTCGGTACCAGTCTTCTGGGAATGGGAACAGCAAATCGCCTGGTAAGGGCGGCAAGTTCCGCGGTAAACGGCCTGGTAAGACTTCTAGACGCATTTGTTCATACCAATTTTCGTTTTCCCACGATTTCGGTTTTATTACATATTTGGTGGCATCTACAGTTAAACCATCGTAATCAAAGCATAGTTTTTCGAGATTCATCGGAGTGCTTTTTTCGATTCCTCGAATTGTCGGACATCGATAG</canonical_amplicon>
		<polymorphic_amplicon>ATCTCGTTTTCGGTACCAGTCTTCTGGGAATGGGAACAGCAAATCGCCTGGTAAGGGCGGCAAGTTCCGCGGTAAACGGCCTGGTAAGACTTCTAGACGCATTTGTTCATACCAATTTTCGTTTTCCCACGATTTCGGTTTTATWACATATTTGGTGGCATCTACAGTTAAACCATCGTAATCAAAGCATAGTTTTTCGAGATTCATCGGAGTGCTTTTTTCGATTCCTCGAATTGTCGGACATCGATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4594</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>30712</contig_pos>
        <strand></strand>
        <context>CCTGGTAAGG[G/A]CGGCAAGTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTCGGTACCAGTCTTCTGGGAATGGGAACAGCAAATCGCCTGGTAAGG</left_flank>
        <right_flank>CGGCAAGTTCCGCGGTAAACGGCCTGGTAAGACTTCTAGACGCATTTGTT</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAAAAATCTCTAGCCCAGTCAAGGATTTTGTCCCACAAAATCACTACAAACGCAGGAGGAAGCATGATCAAAATGACCATAAATATCAGGGTCCACCCCTTGTAACGGGAGGGAGAAAACTTGAATTTCATGGTTTGGCGCCAAAATTTGGTTTAGTGCATCCTGGGGCTCTCCATGAGTCTTCACTTTGACCGGATAGATTTCTAGACTCTCTGGTAGTCTATAAATCGCTGAAATATTCTCATGGAAGGTGTTGTCGAACTCCAAAAGGCTGGTATTTCTTCTGAGTTTCGTTCCAAAAAGTTCGCTAGCGAATTTCTTCTGAGCTCGATGAAGTGAAAGATTTGAATAGTCCTTTTTTAGAAGATAACATTTCTCATCCTTATCTCTCTTGATTTTTAAGATGAATTCCTGGGGAAAAGGGGGCTCCAAACTCCCAACATCTCGTTTTCGGTACCAGTCTTCTGGGAATGGGAACAGCAAATCGCCTGGTAAGGGCGGCAAGTTCCGCGGTAAACGGCCTGGTAAGACTTCTAGACGCATTTGTTCATACCAATTTTCGTTTTCCCACGATTTCGGTTTTATTACATATTTGGTGGCATCTACAGTTAAACCATCGTAATCAAAGCATAGTTTTTCGAGATTCATCGGAGTGCTTTTTTCGATTCCTCGAATTGTCGGACATCGATAGCGATTTGGCTTCTGAAACCTCGATTTTTGAATTTGGCTTGTCAAGAGCTTCAAAATGAGCCTACACACGACTAGATTTGCTATTCTTTGATTTTTCGGGTTGCGTCGCGGTCGTGCGTCGCGTGTTAGGCATCAAATTTGAAAGTTGACCGATTCTAGACGTGATTAGTCTCATTTTGAAGCTCAGAACCTCAAAAATTTGAAAATTTCGACATCATGCTTCGAAAACTACTACATTTTGAGCTTCGGCATAAAATGAGATATTCAGATATTCGAAATTTTCAAATATCTTCTTTCCAAATTGACCA</canonical>
            <polymorphic>TTCAAAAATCTCTAGCCCAGTCAAGGATTTTGTCCCACAAAATCACTACAAACGCAGGAGGAAGCATGATCAAAATGACCATAAATATCAGGGTCCACCCCTTGTAACGGGAGGGAGAAAACTTGAATTTCATGGTTTGGCGCCAAAATTTGGTTTAGTGCATCCTGGGGCTCTCCATGAGTCTTCACTTTGACCGGATAGATTTCTAGACTCTCTGGTAGTCTATAAATCGCTGAAATATTCTCATGGAAGGTGTTGTCGAACTCCAAAAGGCTGGTATTTCTTCTGAGTTTCGTTCCAAAAAGTTCGCTAGCGAATTTCTTCTGAGCTCGATGAAGTGAAAGATTTGAATAGTCCTTTTTTAGAAGATAACATTTCTCATCCTTATCTCTCTTGATTTTTAAGATGAATTCCTGGGGAAAAGGGGGCTCCAAACTCCCAACATCTCGTTTTCGGTACCAGTCTTCTGGGAATGGGAACAGCAAATCGCCTGGTAAGGRCGGCAAGTTCCGCGGTAAACGGCCTGGTAAGACTTCTAGACGCATTTGTTCATACCAATTTTCGTTTTCCCACGATTTCGGTTTTATTACATATTTGGTGGCATCTACAGTTAAACCATCGTAATCAAAGCATAGTTTTTCGAGATTCATCGGAGTGCTTTTTTCGATTCCTCGAATTGTCGGACATCGATAGCGATTTGGCTTCTGAAACCTCGATTTTTGAATTTGGCTTGTCAAGAGCTTCAAAATGAGCCTACACACGACTAGATTTGCTATTCTTTGATTTTTCGGGTTGCGTCGCGGTCGTGCGTCGCGTGTTAGGCATCAAATTTGAAAGTTGACCGATTCTAGACGTGATTAGTCTCATTTTGAAGCTCAGAACCTCAAAAATTTGAAAATTTCGACATCATGCTTCGAAAACTACTACATTTTGAGCTTCGGCATAAAATGAGATATTCAGATATTCGAAATTTTCAAATATCTTCTTTCCAAATTGACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>499 490 11</canonical_bands>
                <polymorphic_bands>510 490</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>504 347 84 43 22</canonical_bands>
                <polymorphic_bands>851 84 43 22</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATCCTTATCTCTCTTGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGATTACGATGGTTTAACTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCATCCTTATCTCTCTTGATTTTTAAGATGAATTCCTGGGGAAAAGGGGGCTCCAAACTCCCAACATCTCGTTTTCGGTACCAGTCTTCTGGGAATGGGAACAGCAAATCGCCTGGTAAGGGCGGCAAGTTCCGCGGTAAACGGCCTGGTAAGACTTCTAGACGCATTTGTTCATACCAATTTTCGTTTTCCCACGATTTCGGTTTTATTACATATTTGGTGGCATCTACAGTTAAACCATCGTAATCAAA</canonical_amplicon>
		<polymorphic_amplicon>TCATCCTTATCTCTCTTGATTTTTAAGATGAATTCCTGGGGAAAAGGGGGCTCCAAACTCCCAACATCTCGTTTTCGGTACCAGTCTTCTGGGAATGGGAACAGCAAATCGCCTGGTAAGGRCGGCAAGTTCCGCGGTAAACGGCCTGGTAAGACTTCTAGACGCATTTGTTCATACCAATTTTCGTTTTCCCACGATTTCGGTTTTATTACATATTTGGTGGCATCTACAGTTAAACCATCGTAATCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4596</snp_id>
        <super_contig>c002300849.Contig1</super_contig>
        <contig_pos>5083</contig_pos>
        <strand>+</strand>
        <context>GACCAGCTCC[A/G]AGAGCTGCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATACTTTATTCACTGTGGTGACAGCAACCGACAGATCTAGACCAGCTCC</left_flank>
        <right_flank>AGAGCTGCCTGGCGAGCTGGAGCTTGGCCAACATTTGCTTGGCAGACTTG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGACTTCACATTCACTGGCACCACTTCTGGCCCGATGTTTCCGTTCTGAATATTACTTAACATCATAAACTACAAAGAACTATCAAATTTTTCAAACCTTCCACGCTTCAGCTGCTTTCTTATAACTGCTGATGGCATAATCATCTTGGTCTTTGCGGGTAATTCCCATTTCCTTAGAAGTTTTCTCTCCACAGTTACCCATATGAATCTTGTCATAGGCATCGGTGAGTCCGTCTTTTACAATTCCATCCTACAAATAATTCTACGATGTTGAAATCTTGAATGAGCTTCGCTTACAATCACTTGGAATCCTCCATACGGAATCTCTCCACGAGGAACGTACAGTGGCACTTGGGACATGCTCTCCATTCCTCCTCCAATAGCCAAATCCTGGTGTCCGGTTTGGATTTGTTGAGCAGCAAGAATAATAGCCTTCAATCCAGACGAGCATACTTTATTCACTGTGGTGACAGCAACCGACAGATCTAGACCAGCTCCGAGAGCTGCCTGGCGAGCTGGAGCTTGGCCAACATTTGCTTGGCAGACTTGTCCAAGGAAAACCTCCTGAATAGAGCTTGGCTTCACTGCTCCTCGCTCTAAAGCAGCTTTGATGGCGACGGATGCGAGTTCTGGTGCTGTTACAGAAGCAAGAGAAGAACGGAACGATCCAATTGGAGTACGGGCAGCTCCAACGATGAAAGCGTCCTTGTTGGAGAGAGCTGCGGATGTGGACAGTCCACGACGGAGAGCGTGCCCAGAAGAAGAAATCATTCTGAAATAATCAGTATGTTAAAAATGATAACAGTTCAATCCGGAAGAGAAATAGTTGCAACGGTACAAAGAAGCTAAAACGAAGCAGGGAAAAAAATTTGACACCTGACAGCAGAGCGTGCTTGCAATTATTTTGTATAGAAAAAGAAAAAGATGTCGGGCAGACGGCATTTTTGATGACAAATACTAACTTTCGGTCATAAAGTCATATCTCTCATTTGTCCGAAA</canonical>
            <polymorphic>TGGACTTCACATTCACTGGCACCACTTCTGGCCCGATGTTTCCGTTCTGAATATTACTTAACATCATAAACTACAAAGAACTATCAAATTTTTCAAACCTTCCACGCTTCAGCTGCTTTCTTATAACTGCTGATGGCATAATCATCTTGGTCTTTGCGGGTAATTCCCATTTCCTTAGAAGTTTTCTCTCCACAGTTACCCATATGAATCTTGTCATAGGCATCGGTGAGTCCGTCTTTTACAATTCCATCCTACAAATAATTCTACGATGTTGAAATCTTGAATGAGCTTCGCTTACAATCACTTGGAATCCTCCATACGGAATCTCTCCACGAGGAACGTACAGTGGCACTTGGGACATGCTCTCCATTCCTCCTCCAATAGCCAAATCCTGGTGTCCGGTTTGGATTTGTTGAGCAGCAAGAATAATAGCCTTCAATCCAGACGAGCATACTTTATTCACTGTGGTGACAGCAACCGACAGATCTAGACCAGCTCCRAGAGCTGCCTGGCGAGCTGGAGCTTGGCCAACATTTGCTTGGCAGACTTGTCCAAGGAAAACCTCCTGAATAGAGCTTGGCTTCACTGCTCCTCGCTCTAAAGCAGCTTTGATGGCGACGGATGCGAGTTCTGGTGCTGTTACAGAAGCAAGAGAAGAACGGAACGATCCAATTGGAGTACGGGCAGCTCCAACGATGAAAGCGTCCTTGTTGGAGAGAGCTGCGGATGTGGACAGTCCACGACGGAGAGCGTGCCCAGAAGAAGAAATCATTCTGAAATAATCAGTATGTTAAAAATGATAACAGTTCAATCCGGAAGAGAAATAGTTGCAACGGTACAAAGAAGCTAAAACGAAGCAGGGAAAAAAATTTGACACCTGACAGCAGAGCGTGCTTGCAATTATTTTGTATAGAAAAAGAAAAAGATGTCGGGCAGACGGCATTTTTGATGACAAATACTAACTTTCGGTCATAAAGTCATATCTCTCATTTGTCCGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>451 276 221 48 4</canonical_bands>
                <polymorphic_bands>727 221 48 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCAAGAATAATAGCCTTCAATC</pcr_primer_p1>
		<pcr_primer_p2>CGTTCTTCTCTTGCTTCTGTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AGCAAGAATAATAGCCTTCAATCCAGACGAGCATACTTTATTCACTGTGGTGACAGCAACCGACAGATCTAGACCAGCTCCGAGAGCTGCCTGGCGAGCTGGAGCTTGGCCAACATTTGCTTGGCAGACTTGTCCAAGGAAAACCTCCTGAATAGAGCTTGGCTTCACTGCTCCTCGCTCTAAAGCAGCTTTGATGGCGACGGATGCGAGTTCTGGTGCTGTTACAGAAGCAAGAGAAGAACG</canonical_amplicon>
		<polymorphic_amplicon>AGCAAGAATAATAGCCTTCAATCCAGACGAGCATACTTTATTCACTGTGGTGACAGCAACCGACAGATCTAGACCAGCTCCRAGAGCTGCCTGGCGAGCTGGAGCTTGGCCAACATTTGCTTGGCAGACTTGTCCAAGGAAAACCTCCTGAATAGAGCTTGGCTTCACTGCTCCTCGCTCTAAAGCAGCTTTGATGGCGACGGATGCGAGTTCTGGTGCTGTTACAGAAGCAAGAGAAGAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4597</snp_id>
        <super_contig>c002300849.Contig1</super_contig>
        <contig_pos>6584</contig_pos>
        <strand>+</strand>
        <context>TAAGCTTTTC[C/T]AACTGTTCGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGGAACCTCGGCGAGCAGTTTGGAACTTTGAGCTTATCCTAAGCTTTTC</left_flank>
        <right_flank>AACTGTTCGACAAACTGAAAATGTTCCAAAATTAAAATGATCTGAAAACA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTGCCGAATATGCCGAGAAAGTCCCTTTTCGATAATAATATGATGCTCTGGATAATTTTTATTTGATATTTCTTCAATTTGCCAGGTTTAGAATCTTCATAACTTCCGATTTGCTGCCATTTTTTGTTCCAAAGCGTATTTTCGAATCGCCAACAGAAAAATACTTCACGAAGCTCTTTCATAACATAGTTTTTCCCCAATGTTTGCACAATGCTCAACAGTTGCAACACTTTTCATCGGATACAAAATTGATTGTGAGGAAGAGTACGCCGAATTACTTTCCAATTGGACGAATTTAAATACCTCCCTTCTTATTTTTACTGTCACTTCCTCATCTATTTGATATGTTTCAACCTCCTGCCAATTTTTTATGTATGAACGGCGCGCGCGCCACGAAAACCTTCGCAAACGCGCTCCAGTGAAATGTAAAATTTTACAAAAAAATTTAGGGAACCTCGGCGAGCAGTTTGGAACTTTGAGCTTATCCTAAGCTTTTCCAACTGTTCGACAAACTGAAAATGTTCCAAAATTAAAATGATCTGAAAACATCTCGAAATCCAGTCATGATTACTGTTTAAATTCATCTAATCCTAATTTAAAATTTAGGACTCTTTCCTAAATAAGTTCATAAATGCTTCTATTTCCGTGTTTTCACCTGATTCTTTCTAGTTTTTCATTTATCTTATTTCAGCGTACTCTGAAAGCTGCTATCCAGCAATGAGCGAGCCAGAGGCCAAATTGAGTAAGAAGTAAGTGAGAAAATGATGATAACGGTTCAAACGCTGTTGAGTCGTTCGGCAGTTTCGTTTCTGAGACCGCGGTTACTTCTTGGGACAAACGCATATCTGAGCCAAAACACTCGGTTAGTCGATGTGTCCTCAGATGCCAAATGAATACCCTTAACAATGAAAAATTTTCAGTGAGCAGAAACGGCTCGCCAAGCAAGCCAAGAAGGAGCAGGAGCGTCTTGAAAAGGAGGCTGCAAAGCTGAATGTGGC</canonical>
            <polymorphic>TGCTGCCGAATATGCCGAGAAAGTCCCTTTTCGATAATAATATGATGCTCTGGATAATTTTTATTTGATATTTCTTCAATTTGCCAGGTTTAGAATCTTCATAACTTCCGATTTGCTGCCATTTTTTGTTCCAAAGCGTATTTTCGAATCGCCAACAGAAAAATACTTCACGAAGCTCTTTCATAACATAGTTTTTCCCCAATGTTTGCACAATGCTCAACAGTTGCAACACTTTTCATCGGATACAAAATTGATTGTGAGGAAGAGTACGCCGAATTACTTTCCAATTGGACGAATTTAAATACCTCCCTTCTTATTTTTACTGTCACTTCCTCATCTATTTGATATGTTTCAACCTCCTGCCAATTTTTTATGTATGAACGGCGCGCGCGCCACGAAAACCTTCGCAAACGCGCTCCAGTGAAATGTAAAATTTTACAAAAAAATTTAGGGAACCTCGGCGAGCAGTTTGGAACTTTGAGCTTATCCTAAGCTTTTCYAACTGTTCGACAAACTGAAAATGTTCCAAAATTAAAATGATCTGAAAACATCTCGAAATCCAGTCATGATTACTGTTTAAATTCATCTAATCCTAATTTAAAATTTAGGACTCTTTCCTAAATAAGTTCATAAATGCTTCTATTTCCGTGTTTTCACCTGATTCTTTCTAGTTTTTCATTTATCTTATTTCAGCGTACTCTGAAAGCTGCTATCCAGCAATGAGCGAGCCAGAGGCCAAATTGAGTAAGAAGTAAGTGAGAAAATGATGATAACGGTTCAAACGCTGTTGAGTCGTTCGGCAGTTTCGTTTCTGAGACCGCGGTTACTTCTTGGGACAAACGCATATCTGAGCCAAAACACTCGGTTAGTCGATGTGTCCTCAGATGCCAAATGAATACCCTTAACAATGAAAAATTTTCAGTGAGCAGAAACGGCTCGCCAAGCAAGCCAAGAAGGAGCAGGAGCGTCTTGAAAAGGAGGCTGCAAAGCTGAATGTGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCCTTCTTATTTTTACTGTCA</pcr_primer_p1>
		<pcr_primer_p2>CGAGATGTTTTCAGATCATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCCCTTCTTATTTTTACTGTCACTTCCTCATCTATTTGATATGTTTCAACCTCCTGCCAATTTTTTATGTATGAACGGCGCGCGCGCCACGAAAACCTTCGCAAACGCGCTCCAGTGAAATGTAAAATTTTACAAAAAAATTTAGGGAACCTCGGCGAGCAGTTTGGAACTTTGAGCTTATCCTAAGCTTTTCCAACTGTTCGACAAACTGAAAATGTTCCAAAATTAAAATGATCTGAAAACATCTCG</canonical_amplicon>
		<polymorphic_amplicon>CTCCCTTCTTATTTTTACTGTCACTTCCTCATCTATTTGATATGTTTCAACCTCCTGCCAATTTTTTATGTATGAACGGCGCGCGCGCCACGAAAACCTTCGCAAACGCGCTCCAGTGAAATGTAAAATTTTACAAAAAAATTTAGGGAACCTCGGCGAGCAGTTTGGAACTTTGAGCTTATCCTAAGCTTTTCYAACTGTTCGACAAACTGAAAATGTTCCAAAATTAAAATGATCTGAAAACATCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4598</snp_id>
        <super_contig>c002400810.Contig3</super_contig>
        <contig_pos>37319</contig_pos>
        <strand>+</strand>
        <context>AGTCATCACA[A/T]ACAGTTCTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCTGACTCCCTGGCGAGTGCCCCCACGTGTTTTCTTCCGAGTCATCACA</left_flank>
        <right_flank>ACAGTTCTTCTTCCCCATGGATCAAAAAAAACAATCGGAAAAAGAAAATA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTTTTGTGTTCTTATGTTATTTCCACCACCACCTCTCTCGTGTGTATGTCGAAAATTTCAAATTTTTTTTCGACTACTACCTTTCGCCGGCATTTTCACACTCGCTTTTTTAGCAGATTTTGATCCGTTTCTGTATATAGTATATATCGCAAATTTTACGATTCGTAAAACCTGCAATAGAAGGGCCTGCTAACTGTTAACTTTAAGCCAATTTATCTCAATTTCTGTCAAAGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAAGTGTTTTGCCAGTTGACAACTTTTTGATATCTTGTATAGGAGTTGAGATAATTGAGCTCAAAATTCGGGGGCCCGTCTATTACAGGTTTTATAGTATATTGTTTATTTAAACGAGAGAAGTTGCTCCAATGTTTCAAAGAGAAAACAAATGACCTCCTCTTTGTGTCTCCTGACTCCCTGGCGAGTGCCCCCACGTGTTTTCTTCCGAGTCATCACATACAGTTCTTCTTCCCCATGGATCAAAAAAAACAATCGGAAAAAGAAAATATTGATCTGAAAACTAAAATTTGCAATTTTAGAACGAAAAACCGATCGAAGTAGTCGTCGAGAAGAAGCAAAACGAGCCAGAGAACAAATCGGAATCAGTGGAAACTGATCACGCGGCCGCCGGAGATTACTCTGAAGCTGTTCAACAAGCTGAAGACGTGGAGGTTCAGGAAGAGGAGCAGAAGGTTTGTGATGTGCTTTTGTGTCAAAAAAAATTTGAAGTTTTTATGTTGCCCAGGGAGAATTTTCCACTTTTTGCTGCTTCTTTTTTTCGGCACAGGAAAAAATAACAGAAAAAAAAACGAAAAATTTATATGGCCGATATTTTTATGGCTTTCCCTTCTTTCTTCTCTTTTCAAAAAATGAAACTATCCCATTTTTTCTAGGAAAGCGAACCAGAACAGAAGCCAGAAGAAAAGGTAGAACCTGTCAAGGAGGAGGTGGAAGAGGA</canonical>
            <polymorphic>CTCTTTTGTGTTCTTATGTTATTTCCACCACCACCTCTCTCGTGTGTATGTCGAAAATTTCAAATTTTTTTTCGACTACTACCTTTCGCCGGCATTTTCACACTCGCTTTTTTAGCAGATTTTGATCCGTTTCTGTATATAGTATATATCGCAAATTTTACGATTCGTAAAACCTGCAATAGAAGGGCCTGCTAACTGTTAACTTTAAGCCAATTTATCTCAATTTCTGTCAAAGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAAGTGTTTTGCCAGTTGACAACTTTTTGATATCTTGTATAGGAGTTGAGATAATTGAGCTCAAAATTCGGGGGCCCGTCTATTACAGGTTTTATAGTATATTGTTTATTTAAACGAGAGAAGTTGCTCCAATGTTTCAAAGAGAAAACAAATGACCTCCTCTTTGTGTCTCCTGACTCCCTGGCGAGTGCCCCCACGTGTTTTCTTCCGAGTCATCACAWACAGTTCTTCTTCCCCATGGATCAAAAAAAACAATCGGAAAAAGAAAATATTGATCTGAAAACTAAAATTTGCAATTTTAGAACGAAAAACCGATCGAAGTAGTCGTCGAGAAGAAGCAAAACGAGCCAGAGAACAAATCGGAATCAGTGGAAACTGATCACGCGGCCGCCGGAGATTACTCTGAAGCTGTTCAACAAGCTGAAGACGTGGAGGTTCAGGAAGAGGAGCAGAAGGTTTGTGATGTGCTTTTGTGTCAAAAAAAATTTGAAGTTTTTATGTTGCCCAGGGAGAATTTTCCACTTTTTGCTGCTTCTTTTTTTCGGCACAGGAAAAAATAACAGAAAAAAAAACGAAAAATTTATATGGCCGATATTTTTATGGCTTTCCCTTCTTTCTTCTCTTTTCAAAAAATGAAACTATCCCATTTTTTCTAGGAAAGCGAACCAGAACAGAAGCCAGAAGAAAAGGTAGAACCTGTCAAGGAGGAGGTGGAAGAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAATGTTTCAAAGAGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CACTGATTCCGATTTGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TCCAATGTTTCAAAGAGAAAACAAATGACCTCCTCTTTGTGTCTCCTGACTCCCTGGCGAGTGCCCCCACGTGTTTTCTTCCGAGTCATCACATACAGTTCTTCTTCCCCATGGATCAAAAAAAACAATCGGAAAAAGAAAATATTGATCTGAAAACTAAAATTTGCAATTTTAGAACGAAAAACCGATCGAAGTAGTCGTCGAGAAGAAGCAAAACGAGCCAGAGAACAAATCGGAATCAGTG</canonical_amplicon>
		<polymorphic_amplicon>TCCAATGTTTCAAAGAGAAAACAAATGACCTCCTCTTTGTGTCTCCTGACTCCCTGGCGAGTGCCCCCACGTGTTTTCTTCCGAGTCATCACAWACAGTTCTTCTTCCCCATGGATCAAAAAAAACAATCGGAAAAAGAAAATATTGATCTGAAAACTAAAATTTGCAATTTTAGAACGAAAAACCGATCGAAGTAGTCGTCGAGAAGAAGCAAAACGAGCCAGAGAACAAATCGGAATCAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4599</snp_id>
        <super_contig>c002400810.Contig3</super_contig>
        <contig_pos>37221</contig_pos>
        <strand></strand>
        <context>AACGAGAGAA[G/T]TTGCTCCAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGCCCGTCTATTACAGGTTTTATAGTATATTGTTTATTTAAACGAGAGAA</left_flank>
        <right_flank>TTGCTCCAATGTTTCAAAGAGAAAACAAATGACCTCCTCTTTGTGTCTCC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAAAATAGTCATTTTTAACCCCAAAAATGCCAAACTTGACATGGCTAGCGATACATATACACACACGATCAGATGCGATCTCCTCATTTTCCTCCTCTCTTTTGTGTTCTTATGTTATTTCCACCACCACCTCTCTCGTGTGTATGTCGAAAATTTCAAATTTTTTTTCGACTACTACCTTTCGCCGGCATTTTCACACTCGCTTTTTTAGCAGATTTTGATCCGTTTCTGTATATAGTATATATCGCAAATTTTACGATTCGTAAAACCTGCAATAGAAGGGCCTGCTAACTGTTAACTTTAAGCCAATTTATCTCAATTTCTGTCAAAGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAAGTGTTTTGCCAGTTGACAACTTTTTGATATCTTGTATAGGAGTTGAGATAATTGAGCTCAAAATTCGGGGGCCCGTCTATTACAGGTTTTATAGTATATTGTTTATTTAAACGAGAGAAGTTGCTCCAATGTTTCAAAGAGAAAACAAATGACCTCCTCTTTGTGTCTCCTGACTCCCTGGCGAGTGCCCCCACGTGTTTTCTTCCGAGTCATCACATACAGTTCTTCTTCCCCATGGATCAAAAAAAACAATCGGAAAAAGAAAATATTGATCTGAAAACTAAAATTTGCAATTTTAGAACGAAAAACCGATCGAAGTAGTCGTCGAGAAGAAGCAAAACGAGCCAGAGAACAAATCGGAATCAGTGGAAACTGATCACGCGGCCGCCGGAGATTACTCTGAAGCTGTTCAACAAGCTGAAGACGTGGAGGTTCAGGAAGAGGAGCAGAAGGTTTGTGATGTGCTTTTGTGTCAAAAAAAATTTGAAGTTTTTATGTTGCCCAGGGAGAATTTTCCACTTTTTGCTGCTTCTTTTTTTCGGCACAGGAAAAAATAACAGAAAAAAAAACGAAAAATTTATATGGCCGATATTTTTATGGCTTTCCCTTCTTTCTTCTCT</canonical>
            <polymorphic>TCTAAAATAGTCATTTTTAACCCCAAAAATGCCAAACTTGACATGGCTAGCGATACATATACACACACGATCAGATGCGATCTCCTCATTTTCCTCCTCTCTTTTGTGTTCTTATGTTATTTCCACCACCACCTCTCTCGTGTGTATGTCGAAAATTTCAAATTTTTTTTCGACTACTACCTTTCGCCGGCATTTTCACACTCGCTTTTTTAGCAGATTTTGATCCGTTTCTGTATATAGTATATATCGCAAATTTTACGATTCGTAAAACCTGCAATAGAAGGGCCTGCTAACTGTTAACTTTAAGCCAATTTATCTCAATTTCTGTCAAAGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAAGTGTTTTGCCAGTTGACAACTTTTTGATATCTTGTATAGGAGTTGAGATAATTGAGCTCAAAATTCGGGGGCCCGTCTATTACAGGTTTTATAGTATATTGTTTATTTAAACGAGAGAAKTTGCTCCAATGTTTCAAAGAGAAAACAAATGACCTCCTCTTTGTGTCTCCTGACTCCCTGGCGAGTGCCCCCACGTGTTTTCTTCCGAGTCATCACATACAGTTCTTCTTCCCCATGGATCAAAAAAAACAATCGGAAAAAGAAAATATTGATCTGAAAACTAAAATTTGCAATTTTAGAACGAAAAACCGATCGAAGTAGTCGTCGAGAAGAAGCAAAACGAGCCAGAGAACAAATCGGAATCAGTGGAAACTGATCACGCGGCCGCCGGAGATTACTCTGAAGCTGTTCAACAAGCTGAAGACGTGGAGGTTCAGGAAGAGGAGCAGAAGGTTTGTGATGTGCTTTTGTGTCAAAAAAAATTTGAAGTTTTTATGTTGCCCAGGGAGAATTTTCCACTTTTTGCTGCTTCTTTTTTTCGGCACAGGAAAAAATAACAGAAAAAAAAACGAAAAATTTATATGGCCGATATTTTTATGGCTTTCCCTTCTTTCTTCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATTTTGATCCGTTTCTGTAT</pcr_primer_p1>
		<pcr_primer_p2>AGGAGACACAAAGAGGAGGT</pcr_primer_p2>
		<pcr_amplicon_size>337</pcr_amplicon_size>
		<canonical_amplicon>AGATTTTGATCCGTTTCTGTATATAGTATATATCGCAAATTTTACGATTCGTAAAACCTGCAATAGAAGGGCCTGCTAACTGTTAACTTTAAGCCAATTTATCTCAATTTCTGTCAAAGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAAGTGTTTTGCCAGTTGACAACTTTTTGATATCTTGTATAGGAGTTGAGATAATTGAGCTCAAAATTCGGGGGCCCGTCTATTACAGGTTTTATAGTATATTGTTTATTTAAACGAGAGAAGTTGCTCCAATGTTTCAAAGAGAAAACAAATGACCTCCTCTTTGTGTCTCCT</canonical_amplicon>
		<polymorphic_amplicon>AGATTTTGATCCGTTTCTGTATATAGTATATATCGCAAATTTTACGATTCGTAAAACCTGCAATAGAAGGGCCTGCTAACTGTTAACTTTAAGCCAATTTATCTCAATTTCTGTCAAAGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAAGTGTTTTGCCAGTTGACAACTTTTTGATATCTTGTATAGGAGTTGAGATAATTGAGCTCAAAATTCGGGGGCCCGTCTATTACAGGTTTTATAGTATATTGTTTATTTAAACGAGAGAAKTTGCTCCAATGTTTCAAAGAGAAAACAAATGACCTCCTCTTTGTGTCTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4600</snp_id>
        <super_contig>c002400810.Contig3</super_contig>
        <contig_pos>46515</contig_pos>
        <strand>+</strand>
        <context>TGTTGACGTC[A/G]ATAGTGGAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATGGCTTGATACTCTTCCTCATGTATTGATGATCCGTGGTGTTGACGTC</left_flank>
        <right_flank>ATAGTGGAGGAAGATGCAATTGGAGACGTCGATCGGGTCACCATTTTGGA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACAGAATGATTCCTTGTATACACTGCACAGAATGGCTCTGTTTTGTACCTACTGTTGTTTTCCCCCAATTTTTAAGCCCCGAATCGCACTAGGCGATATTCCCTGTCCCTCAACTCGTTATTTGTTAGCCTCTTCGTTTTCCCTTTCTCCCTCTCTCATCTCTATCTCCTATCCCAGAAACAGATCGTCTAGTAGCCTTTTTTTTCTCCTATCTAGGAATTCTTTGGTTTCGAGCAATCCCTGTCAAACCATTCTTCACCAGGTTCTTCTACATCTTTTCATATCCCCATCTCCCATCCTTTACTCTCTATCACACACTCGTTTCTCCTCCCTGCTCCCCTGAATCCGCTTCTCCCATGTTTTGCTTAATTGTGTAATTCCTAAAATTACATCGACTCTTCCATTTTTTATTATTATGCGGAAAAAACAAATAAAAAGTAGAAATTTCTATGGCTTGATACTCTTCCTCATGTATTGATGATCCGTGGTGTTGACGTCGATAGTGGAGGAAGATGCAATTGGAGACGTCGATCGGGTCACCATTTTGGAAGCTGGAGGCGGAGGCGGTGGTGGGGGAGCAGATTCAGAGGATGAGGAAGAATTAGAAGCCGTGATGCTTGATACCGTGGAAGATGAACGAGATGGATTCGCCGCGGCGGCGTTCTAAAATATTTTATGTTTTTGAATGAATAAAAATTTTAAAACTATAAGTCCCAACCTGAAAATGGTCCATGGCTGCAAAAACACACGTGGCAGTTGTCGAATGAACAATTGGATCACACTTCTGATATCCGATGGATTCGTAGAATCCACACTGGTCTTCTGTGGAAAGGAATGCTTCGTCGAATCCGTTTCTCGTCATGAATCTTTCGACTTCAGACAAAGAAGTTTGCCGAGTCCCTGACCTCGTCGACTTTTTTTTATCATTACTGATTCGATCCATAAAGCGGTTGAGCTGGAAATTTTTCCGATGTTTTTTGAATTTGGCGCCAAAATGCG</canonical>
            <polymorphic>CACAGAATGATTCCTTGTATACACTGCACAGAATGGCTCTGTTTTGTACCTACTGTTGTTTTCCCCCAATTTTTAAGCCCCGAATCGCACTAGGCGATATTCCCTGTCCCTCAACTCGTTATTTGTTAGCCTCTTCGTTTTCCCTTTCTCCCTCTCTCATCTCTATCTCCTATCCCAGAAACAGATCGTCTAGTAGCCTTTTTTTTCTCCTATCTAGGAATTCTTTGGTTTCGAGCAATCCCTGTCAAACCATTCTTCACCAGGTTCTTCTACATCTTTTCATATCCCCATCTCCCATCCTTTACTCTCTATCACACACTCGTTTCTCCTCCCTGCTCCCCTGAATCCGCTTCTCCCATGTTTTGCTTAATTGTGTAATTCCTAAAATTACATCGACTCTTCCATTTTTTATTATTATGCGGAAAAAACAAATAAAAAGTAGAAATTTCTATGGCTTGATACTCTTCCTCATGTATTGATGATCCGTGGTGTTGACGTCRATAGTGGAGGAAGATGCAATTGGAGACGTCGATCGGGTCACCATTTTGGAAGCTGGAGGCGGAGGCGGTGGTGGGGGAGCAGATTCAGAGGATGAGGAAGAATTAGAAGCCGTGATGCTTGATACCGTGGAAGATGAACGAGATGGATTCGCCGCGGCGGCGTTCTAAAATATTTTATGTTTTTGAATGAATAAAAATTTTAAAACTATAAGTCCCAACCTGAAAATGGTCCATGGCTGCAAAAACACACGTGGCAGTTGTCGAATGAACAATTGGATCACACTTCTGATATCCGATGGATTCGTAGAATCCACACTGGTCTTCTGTGGAAAGGAATGCTTCGTCGAATCCGTTTCTCGTCATGAATCTTTCGACTTCAGACAAAGAAGTTTGCCGAGTCCCTGACCTCGTCGACTTTTTTTTATCATTACTGATTCGATCCATAAAGCGGTTGAGCTGGAAATTTTTCCGATGTTTTTTGAATTTGGCGCCAAAATGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>232 232 162 105 83 63 40 31 27 25</canonical_bands>
                <polymorphic_bands>232 232 162 136 83 63 40 27 25</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>500 315 87 67 31</canonical_bands>
                <polymorphic_bands>531 315 87 67</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGCTTAATTGTGTAATTCCTA</pcr_primer_p1>
		<pcr_primer_p2>CTTCTAATTCTTCCTCATCCTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTGCTTAATTGTGTAATTCCTAAAATTACATCGACTCTTCCATTTTTTATTATTATGCGGAAAAAACAAATAAAAAGTAGAAATTTCTATGGCTTGATACTCTTCCTCATGTATTGATGATCCGTGGTGTTGACGTCGATAGTGGAGGAAGATGCAATTGGAGACGTCGATCGGGTCACCATTTTGGAAGCTGGAGGCGGAGGCGGTGGTGGGGGAGCAGATTCAGAGGATGAGGAAGAATTAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTTGCTTAATTGTGTAATTCCTAAAATTACATCGACTCTTCCATTTTTTATTATTATGCGGAAAAAACAAATAAAAAGTAGAAATTTCTATGGCTTGATACTCTTCCTCATGTATTGATGATCCGTGGTGTTGACGTCRATAGTGGAGGAAGATGCAATTGGAGACGTCGATCGGGTCACCATTTTGGAAGCTGGAGGCGGAGGCGGTGGTGGGGGAGCAGATTCAGAGGATGAGGAAGAATTAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4601</snp_id>
        <super_contig>c002400810.Contig3</super_contig>
        <contig_pos>46711</contig_pos>
        <strand>+</strand>
        <context>AATGAATAAA[A/G]ATTTTAAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTCGCCGCGGCGGCGTTCTAAAATATTTTATGTTTTTGAATGAATAAA</left_flank>
        <right_flank>ATTTTAAAACTATAAGTCCCAACCTGAAAATGGTCCATGGCTGCAAAAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTTTTTTTCTCCTATCTAGGAATTCTTTGGTTTCGAGCAATCCCTGTCAAACCATTCTTCACCAGGTTCTTCTACATCTTTTCATATCCCCATCTCCCATCCTTTACTCTCTATCACACACTCGTTTCTCCTCCCTGCTCCCCTGAATCCGCTTCTCCCATGTTTTGCTTAATTGTGTAATTCCTAAAATTACATCGACTCTTCCATTTTTTATTATTATGCGGAAAAAACAAATAAAAAGTAGAAATTTCTATGGCTTGATACTCTTCCTCATGTATTGATGATCCGTGGTGTTGACGTCGATAGTGGAGGAAGATGCAATTGGAGACGTCGATCGGGTCACCATTTTGGAAGCTGGAGGCGGAGGCGGTGGTGGGGGAGCAGATTCAGAGGATGAGGAAGAATTAGAAGCCGTGATGCTTGATACCGTGGAAGATGAACGAGATGGATTCGCCGCGGCGGCGTTCTAAAATATTTTATGTTTTTGAATGAATAAAAATTTTAAAACTATAAGTCCCAACCTGAAAATGGTCCATGGCTGCAAAAACACACGTGGCAGTTGTCGAATGAACAATTGGATCACACTTCTGATATCCGATGGATTCGTAGAATCCACACTGGTCTTCTGTGGAAAGGAATGCTTCGTCGAATCCGTTTCTCGTCATGAATCTTTCGACTTCAGACAAAGAAGTTTGCCGAGTCCCTGACCTCGTCGACTTTTTTTTATCATTACTGATTCGATCCATAAAGCGGTTGAGCTGGAAATTTTTCCGATGTTTTTTGAATTTGGCGCCAAAATGCGGGTGTCTCAGTCAAAGCAAAGTAAGGCATTTCAGCTTAACAACCTATAATTTTAAACAAAAATGTTCAGTAGAAATCAGCAAAGTTAACAGAAATTTCCGAATTTTTCGCTGAAATTTCTTCTAATTTTTTTTTGGGCGCTAAGGTAGTTGGGGGGGGCCACTTTTTTTTTCGTTTTTTGAGGCTAATTTAGTGTC</canonical>
            <polymorphic>CCTTTTTTTTCTCCTATCTAGGAATTCTTTGGTTTCGAGCAATCCCTGTCAAACCATTCTTCACCAGGTTCTTCTACATCTTTTCATATCCCCATCTCCCATCCTTTACTCTCTATCACACACTCGTTTCTCCTCCCTGCTCCCCTGAATCCGCTTCTCCCATGTTTTGCTTAATTGTGTAATTCCTAAAATTACATCGACTCTTCCATTTTTTATTATTATGCGGAAAAAACAAATAAAAAGTAGAAATTTCTATGGCTTGATACTCTTCCTCATGTATTGATGATCCGTGGTGTTGACGTCGATAGTGGAGGAAGATGCAATTGGAGACGTCGATCGGGTCACCATTTTGGAAGCTGGAGGCGGAGGCGGTGGTGGGGGAGCAGATTCAGAGGATGAGGAAGAATTAGAAGCCGTGATGCTTGATACCGTGGAAGATGAACGAGATGGATTCGCCGCGGCGGCGTTCTAAAATATTTTATGTTTTTGAATGAATAAARATTTTAAAACTATAAGTCCCAACCTGAAAATGGTCCATGGCTGCAAAAACACACGTGGCAGTTGTCGAATGAACAATTGGATCACACTTCTGATATCCGATGGATTCGTAGAATCCACACTGGTCTTCTGTGGAAAGGAATGCTTCGTCGAATCCGTTTCTCGTCATGAATCTTTCGACTTCAGACAAAGAAGTTTGCCGAGTCCCTGACCTCGTCGACTTTTTTTTATCATTACTGATTCGATCCATAAAGCGGTTGAGCTGGAAATTTTTCCGATGTTTTTTGAATTTGGCGCCAAAATGCGGGTGTCTCAGTCAAAGCAAAGTAAGGCATTTCAGCTTAACAACCTATAATTTTAAACAAAAATGTTCAGTAGAAATCAGCAAAGTTAACAGAAATTTCCGAATTTTTCGCTGAAATTTCTTCTAATTTTTTTTTGGGCGCTAAGGTAGTTGGGGGGGGCCACTTTTTTTTTCGTTTTTTGAGGCTAATTTAGTGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>266 252 225 111 83 22 20 13 8</canonical_bands>
                <polymorphic_bands>518 225 111 83 22 20 13 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>191 150 95 83 75 74 66 62 58 45 22 20 13 11 10 9 8 8</canonical_bands>
                <polymorphic_bands>191 170 150 83 74 66 62 58 45 22 20 13 11 10 9 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGGATGAGGAAGAATTAGAAG</pcr_primer_p1>
		<pcr_primer_p2>ATTCCTTTCCACAGAAGACC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGAGGATGAGGAAGAATTAGAAGCCGTGATGCTTGATACCGTGGAAGATGAACGAGATGGATTCGCCGCGGCGGCGTTCTAAAATATTTTATGTTTTTGAATGAATAAAAATTTTAAAACTATAAGTCCCAACCTGAAAATGGTCCATGGCTGCAAAAACACACGTGGCAGTTGTCGAATGAACAATTGGATCACACTTCTGATATCCGATGGATTCGTAGAATCCACACTGGTCTTCTGTGGAAAGGAAT</canonical_amplicon>
		<polymorphic_amplicon>AGAGGATGAGGAAGAATTAGAAGCCGTGATGCTTGATACCGTGGAAGATGAACGAGATGGATTCGCCGCGGCGGCGTTCTAAAATATTTTATGTTTTTGAATGAATAAARATTTTAAAACTATAAGTCCCAACCTGAAAATGGTCCATGGCTGCAAAAACACACGTGGCAGTTGTCGAATGAACAATTGGATCACACTTCTGATATCCGATGGATTCGTAGAATCCACACTGGTCTTCTGTGGAAAGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4602</snp_id>
        <super_contig>c002400810.Contig3</super_contig>
        <contig_pos>50192</contig_pos>
        <strand>+</strand>
        <context>TGATATCTTC[A/G]AATTCTCTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGATTGATCTGATGAAGATTTTGGCTTATGTGGGTTCTTTGATATCTTC</left_flank>
        <right_flank>AATTCTCTATTTTATCTATTTCCAGATGATTCCAAAAGCCGAAGCTATCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGGATTGATTCGACTGAAAACCAAGTTATAGTGAGTGAAAACCCCTTCTAATTAACTGAAAAAATTCTAAAAATTCAGCTTCAAACAAGCGAAATTCAACCTGTTTCGAGAGGAGTCCGAAGGATATTCAAAACTGATAACAGAGCTTATGGAGTCCTCCGAAAACTGTTCTGCGCATGACGATTTTGCCAAAGTGATAAAGCATCGGGTGCTATCACTGATTGGACAATTCAATTTGGATCCGAATCGAGTGACAGACATAATTCTAGAAGTTTTCGAAATTTTCCCGAAACAGAAAATGTTTTTTATATCACTTCTGAAGGAGATCGATGTGGTTCCAGAGTATCTTTGCGCGATTCTTGGCTTCAAATACACATTTTATCAGTCGGAAAAGAAGAAGACACCGTATTCATTGTATGTGCTGACGGCGTATTTGATTCAACACGAGATGATTGATCTGATGAAGATTTTGGCTTATGTGGGTTCTTTGATATCTTCGAATTCTCTATTTTATCTATTTCCAGATGATTCCAAAAGCCGAAGCTATCAAAGAATCGCATAAAGCGCGAATGGTAAACGCTCAGGAACGTGCATCGAAAGCGGAAACCATCTCCACCGCATCCATCCCAATGACGGATTCCGAAATCGGAATGGGCGGTCCAGTCGTCACCATCTCCATCACTACAGTAATCCAACTACAAGAAGATGAGGATGCCAAGCTCGCCGAGGGATTCAACGAGGAATCAGTGCTTGCATCGAATCAAAAACTGGGACTTGCATGTGCTCTGCTAGAGAATGGAAATTGGAAACAAGCACAACATTTGATAGATCGACTTCCAGAGTACTATGCAGTTCAAGCGAGTCCGAGAGTCTGTCGGGCTCTTTGCAAAATCATTGAGAGGTCGATCGATGCATTTTATCGCAAGAGTTGTTCGTTGAATTTGTTTGGAGAGTTGACAAAGTCAAAGAAACCAGTGCTCGATGATATGGGCAACGGTT</canonical>
            <polymorphic>AGGGATTGATTCGACTGAAAACCAAGTTATAGTGAGTGAAAACCCCTTCTAATTAACTGAAAAAATTCTAAAAATTCAGCTTCAAACAAGCGAAATTCAACCTGTTTCGAGAGGAGTCCGAAGGATATTCAAAACTGATAACAGAGCTTATGGAGTCCTCCGAAAACTGTTCTGCGCATGACGATTTTGCCAAAGTGATAAAGCATCGGGTGCTATCACTGATTGGACAATTCAATTTGGATCCGAATCGAGTGACAGACATAATTCTAGAAGTTTTCGAAATTTTCCCGAAACAGAAAATGTTTTTTATATCACTTCTGAAGGAGATCGATGTGGTTCCAGAGTATCTTTGCGCGATTCTTGGCTTCAAATACACATTTTATCAGTCGGAAAAGAAGAAGACACCGTATTCATTGTATGTGCTGACGGCGTATTTGATTCAACACGAGATGATTGATCTGATGAAGATTTTGGCTTATGTGGGTTCTTTGATATCTTCRAATTCTCTATTTTATCTATTTCCAGATGATTCCAAAAGCCGAAGCTATCAAAGAATCGCATAAAGCGCGAATGGTAAACGCTCAGGAACGTGCATCGAAAGCGGAAACCATCTCCACCGCATCCATCCCAATGACGGATTCCGAAATCGGAATGGGCGGTCCAGTCGTCACCATCTCCATCACTACAGTAATCCAACTACAAGAAGATGAGGATGCCAAGCTCGCCGAGGGATTCAACGAGGAATCAGTGCTTGCATCGAATCAAAAACTGGGACTTGCATGTGCTCTGCTAGAGAATGGAAATTGGAAACAAGCACAACATTTGATAGATCGACTTCCAGAGTACTATGCAGTTCAAGCGAGTCCGAGAGTCTGTCGGGCTCTTTGCAAAATCATTGAGAGGTCGATCGATGCATTTTATCGCAAGAGTTGTTCGTTGAATTTGTTTGGAGAGTTGACAAAGTCAAAGAAACCAGTGCTCGATGATATGGGCAACGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>439 220 187 63 61 21 9</canonical_bands>
                <polymorphic_bands>659 187 63 61 21 9</polymorphic_bands>
            </assay>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 277 221</canonical_bands>
                <polymorphic_bands>723 277</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>170 162 141 97 96 74 73 72 51 29 19 12 4</canonical_bands>
                <polymorphic_bands>267 162 141 96 74 73 72 51 29 19 12 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATGATTGATCTGATGAAGATT</pcr_primer_p1>
		<pcr_primer_p2>TGGATTACTGTAGTGATGGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGATGATTGATCTGATGAAGATTTTGGCTTATGTGGGTTCTTTGATATCTTCGAATTCTCTATTTTATCTATTTCCAGATGATTCCAAAAGCCGAAGCTATCAAAGAATCGCATAAAGCGCGAATGGTAAACGCTCAGGAACGTGCATCGAAAGCGGAAACCATCTCCACCGCATCCATCCCAATGACGGATTCCGAAATCGGAATGGGCGGTCCAGTCGTCACCATCTCCATCACTACAGTAATCCA</canonical_amplicon>
		<polymorphic_amplicon>AGATGATTGATCTGATGAAGATTTTGGCTTATGTGGGTTCTTTGATATCTTCRAATTCTCTATTTTATCTATTTCCAGATGATTCCAAAAGCCGAAGCTATCAAAGAATCGCATAAAGCGCGAATGGTAAACGCTCAGGAACGTGCATCGAAAGCGGAAACCATCTCCACCGCATCCATCCCAATGACGGATTCCGAAATCGGAATGGGCGGTCCAGTCGTCACCATCTCCATCACTACAGTAATCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4603</snp_id>
        <super_contig>c002400817.Contig2</super_contig>
        <contig_pos>28869</contig_pos>
        <strand></strand>
        <context>TATTCATTGT[C/T]YTGTGCCTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCGCATGTTTTTTCGAATTCTATATGTTTCACATACTATATTCATTGT</left_flank>
        <right_flank>TTGTGCCTTTGCTCGATGAAAATCGGTCAGGAATTCGATGAAATTGAATT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGATTTTGCCTGAAAAGCCGGTATTTTCAGTGTAGAACGGCAGGCCAATGAAGTTCTCGTAGTTGGACACTAGAATCGCGTCGATTCGGTCCATTTTCAGCATTTCTGCCTGGAAATTTCAGCAAATTTTTGTTGTTTTTAGATTTCCCGCCTACCGATACATGGAAAATTTCAGGCGGTCCGTCGATATAGACCCGGTGCGAGAGCTCTTTGATATATGGAATACCGAATTTTTTAACGATATGCGCATTTTTGAATCGCGGACTGTAAATTTTAGTTATATAAAAAATTTTCCATCGATTTTCAGTCGCTTGCCTCTGATACACATGTGGCATGAAGCTGAAAAACGGGGTATAGTCTATTGGTGTGTCGAGAAGGATTCGGGAATTTGGCCACTGCAACACATAGCACGGCTTGTGTCCGTGTTTTGTGTAACTTGTCTGCAAAATTTCGCATGTTTTTTCGAATTCTATATGTTTCACATACTATATTCATTGTCTTGTGCCTTTGCTCGATGAAAATCGGTCAGGAATTCGATGAAATTGAATTTACTTTTCGAAAAACCAGTTTCGCGCCAAGGAGCAGGCAAGGCGCACTTGGCGATCCTCCTTGGCGCAATTCTCGTTTTTCTATTTTCGAAAAGATTTTTGACCGATTTTAATTGATTTTTGGCATATTTCCAGTCAAAAATGTCATCTAAATACGCGAAAAAGCGAAAACAACTCGACGACGACACTTCCGAAGCGAGCAGAAGTCGTCGTGACTCGTCCAGATCGCCATCTCCTTCAAGGTCGAAAAGGTGAGATTTTCAAGGTTTTTTCATTGGAATTTTGATTTTTTCAGGTCGGCAAAACAACGAGAACCAGAGAATAATGGAGAGCCGTAAGTTGTTTTCTGCGAAAAAATTCCTTAGCCAAAAAATCTATTTTATGCATTTTTTCTAATTTTCAGCTGGAAAAGTTCAAATATCATGATTTACGGGCAAGATGAGCCTGAAAA</canonical>
            <polymorphic>TAGATTTTGCCTGAAAAGCCGGTATTTTCAGTGTAGAACGGCAGGCCAATGAAGTTCTCGTAGTTGGACACTAGAATCGCGTCGATTCGGTCCATTTTCAGCATTTCTGCCTGGAAATTTCAGCAAATTTTTGTTGTTTTTAGATTTCCCGCCTACCGATACATGGAAAATTTCAGGCGGTCCGTCGATATAGACCCGGTGCGAGAGCTCTTTGATATATGGAATACCGAATTTTTTAACGATATGCGCATTTTTGAATCGCGGACTGTAAATTTTAGTTATATAAAAAATTTTCCATCGATTTTCAGTCGCTTGCCTCTGATACACATGTGGCATGAAGCTGAAAAACGGGGTATAGTCTATTGGTGTGTCGAGAAGGATTCGGGAATTTGGCCACTGCAACACATAGCACGGCTTGTGTCCGTGTTTTGTGTAACTTGTCTGCAAAATTTCGCATGTTTTTTCGAATTCTATATGTTTCACATACTATATTCATTGTYTTGTGCCTTTGCTCGATGAAAATCGGTCAGGAATTCGATGAAATTGAATTTACTTTTCGAAAAACCAGTTTCGCGCCAAGGAGCAGGCAAGGCGCACTTGGCGATCCTCCTTGGCGCAATTCTCGTTTTTCTATTTTCGAAAAGATTTTTGACCGATTTTAATTGATTTTTGGCATATTTCCAGTCAAAAATGTCATCTAAATACGCGAAAAAGCGAAAACAACTCGACGACGACACTTCCGAAGCGAGCAGAAGTCGTCGTGACTCGTCCAGATCGCCATCTCCTTCAAGGTCGAAAAGGTGAGATTTTCAAGGTTTTTTCATTGGAATTTTGATTTTTTCAGGTCGGCAAAACAACGAGAACCAGAGAATAATGGAGAGCCGTAAGTTGTTTTCTGCGAAAAAATTCCTTAGCCAAAAAATCTATTTTATGCATTTTTTCTAATTTTCAGCTGGAAAAGTTCAAATATCATGATTTACGGGCAAGATGAGCCTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTGTAACTTGTCTGCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TATGCCAAAAATCAATTAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGTGTAACTTGTCTGCAAAATTTCGCATGTTTTTTCGAATTCTATATGTTTCACATACTATATTCATTGTCTTGTGCCTTTGCTCGATGAAAATCGGTCAGGAATTCGATGAAATTGAATTTACTTTTCGAAAAACCAGTTTCGCGCCAAGGAGCAGGCAAGGCGCACTTGGCGATCCTCCTTGGCGCAATTCTCGTTTTTCTATTTTCGAAAAGATTTTTGACCGATTTTAATTGATTTTTGGCATA</canonical_amplicon>
		<polymorphic_amplicon>TTGTGTAACTTGTCTGCAAAATTTCGCATGTTTTTTCGAATTCTATATGTTTCACATACTATATTCATTGTYTTGTGCCTTTGCTCGATGAAAATCGGTCAGGAATTCGATGAAATTGAATTTACTTTTCGAAAAACCAGTTTCGCGCCAAGGAGCAGGCAAGGCGCACTTGGCGATCCTCCTTGGCGCAATTCTCGTTTTTCTATTTTCGAAAAGATTTTTGACCGATTTTAATTGATTTTTGGCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4604</snp_id>
        <super_contig>c002400817.Contig2</super_contig>
        <contig_pos>31571</contig_pos>
        <strand>+</strand>
        <context>ACTCATTTTG[A/G]CTCCAATTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCTGAAAAAATCGAAAATCCTTCAATTTGCAGCTGAAAAACTCATTTTG</left_flank>
        <right_flank>CTCCAATTTGACCCCAAAAGTTGAGAAAAATGCGCTAATTTTTGGCTTAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATCTTCAATTTTTGTTTTCAGGAATCCTTGACGACGGTGACGAGGTGCTGGTCAATCCGAACATGCTGGACGACGAGCGACACGTTCGGAATGTGGAGCTTCGGAAGCGAAAAGATCCGAATCGCAATTTCGACGAGGATGTCGATGAGTTTGGCAATGTAAGTGGTTTTGAGAGGTCGAATTTCGGCGGAAAACGGTCTAAAATTGACTGAAAATAGCCTCAAAATTCGCCAAAATTAACTCAAATCGGTCTAGAACGGCCTAAACTAGGCCGAATTGACTGACGAATTGAGTGAAACTATCCTAAAAATGACCTACCAGGACCTGAAATGGACGCGAATAGGCTGAAATTGATTAAAATAGGTTTTTTTGGCTTAAAATGCGACTTTTTGACCTTGAAAATCTTCTAAAACCCTTGTTTCGGAGCCTAATTTCACCCCAAACTCATCTGAAAAAATCGAAAATCCTTCAATTTGCAGCTGAAAAACTCATTTTGGCTCCAATTTGACCCCAAAAGTTGAGAAAAATGCGCTAATTTTTGGCTTAAAATGTGACTTTTTGACCTTGAAAGCTTTGGAAAATGCCTTATTTTGCCTTCAAATTTATCCAAATTTCTCTAAAAACTCCCAAATTTTGCAGCTCAAAAACTTTGGAGTGCTCGCGAAGTACGACGAAACACTTGAAGGCGAACAGAAGAAGCAATTCCGGCTGGACGAGACGGGCGGTGTGGATCTAGAAGAGGAGAAACGAGAGATGGAAGCATTCCGACGCATGAAAATGGCCGGGAAGCGTCTGGAGAGTTTGGAAACCAAAAAATACGAATTGGCCAGCGAATTCTACACCCAGGACGAAATGACACAGTTCAGAAAGGTCAAGAAGGGCAAAAAAGAGAAGAATATCAGGAAGAGGAAGGTTCTGAAGGCGTCAGACTTGGTGCCAGTCGAGAAGGCCGGGCAGAGTTTTGGAAGACGTCGAAGGGATTCTGATGAAACTCAAG</canonical>
            <polymorphic>AAAATCTTCAATTTTTGTTTTCAGGAATCCTTGACGACGGTGACGAGGTGCTGGTCAATCCGAACATGCTGGACGACGAGCGACACGTTCGGAATGTGGAGCTTCGGAAGCGAAAAGATCCGAATCGCAATTTCGACGAGGATGTCGATGAGTTTGGCAATGTAAGTGGTTTTGAGAGGTCGAATTTCGGCGGAAAACGGTCTAAAATTGACTGAAAATAGCCTCAAAATTCGCCAAAATTAACTCAAATCGGTCTAGAACGGCCTAAACTAGGCCGAATTGACTGACGAATTGAGTGAAACTATCCTAAAAATGACCTACCAGGACCTGAAATGGACGCGAATAGGCTGAAATTGATTAAAATAGGTTTTTTTGGCTTAAAATGCGACTTTTTGACCTTGAAAATCTTCTAAAACCCTTGTTTCGGAGCCTAATTTCACCCCAAACTCATCTGAAAAAATCGAAAATCCTTCAATTTGCAGCTGAAAAACTCATTTTGRCTCCAATTTGACCCCAAAAGTTGAGAAAAATGCGCTAATTTTTGGCTTAAAATGTGACTTTTTGACCTTGAAAGCTTTGGAAAATGCCTTATTTTGCCTTCAAATTTATCCAAATTTCTCTAAAAACTCCCAAATTTTGCAGCTCAAAAACTTTGGAGTGCTCGCGAAGTACGACGAAACACTTGAAGGCGAACAGAAGAAGCAATTCCGGCTGGACGAGACGGGCGGTGTGGATCTAGAAGAGGAGAAACGAGAGATGGAAGCATTCCGACGCATGAAAATGGCCGGGAAGCGTCTGGAGAGTTTGGAAACCAAAAAATACGAATTGGCCAGCGAATTCTACACCCAGGACGAAATGACACAGTTCAGAAAGGTCAAGAAGGGCAAAAAAGAGAAGAATATCAGGAAGAGGAAGGTTCTGAAGGCGTCAGACTTGGTGCCAGTCGAGAAGGCCGGGCAGAGTTTTGGAAGACGTCGAAGGGATTCTGATGAAACTCAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>437 428 73 62</canonical_bands>
                <polymorphic_bands>510 428 62</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>123 120 101 73 73 69 68 53 53 48 45 45 42 29 29 18 11</canonical_bands>
                <polymorphic_bands>123 120 101 73 73 69 68 63 53 53 48 45 42 29 29 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATCTTCTAAAACCCTTGTT</pcr_primer_p1>
		<pcr_primer_p2>GCAAAATTTGGGAGTTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GAAAATCTTCTAAAACCCTTGTTTCGGAGCCTAATTTCACCCCAAACTCATCTGAAAAAATCGAAAATCCTTCAATTTGCAGCTGAAAAACTCATTTTGGCTCCAATTTGACCCCAAAAGTTGAGAAAAATGCGCTAATTTTTGGCTTAAAATGTGACTTTTTGACCTTGAAAGCTTTGGAAAATGCCTTATTTTGCCTTCAAATTTATCCAAATTTCTCTAAAAACTCCCAAATTTTGC</canonical_amplicon>
		<polymorphic_amplicon>GAAAATCTTCTAAAACCCTTGTTTCGGAGCCTAATTTCACCCCAAACTCATCTGAAAAAATCGAAAATCCTTCAATTTGCAGCTGAAAAACTCATTTTGRCTCCAATTTGACCCCAAAAGTTGAGAAAAATGCGCTAATTTTTGGCTTAAAATGTGACTTTTTGACCTTGAAAGCTTTGGAAAATGCCTTATTTTGCCTTCAAATTTATCCAAATTTCTCTAAAAACTCCCAAATTTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4614</snp_id>
        <super_contig>c002400855.Contig3</super_contig>
        <contig_pos>9544</contig_pos>
        <strand>+</strand>
        <context>TGTGCTCCTG[C/T]TAATCTATAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACTTAATCCCGAATTTCTAGAAATTTCCATTTCCTCATTTGTGCTCCTG</left_flank>
        <right_flank>TAATCTATAAGCCCCGCCCATTTTCTTAGGCTCCGCCCACTTCCTTTTCT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACACTGGCAAAATGAAAAAAAAAATCAAAGAAAATTTTTTTAGACCCAAATTTTTCACCTAAAAATGCAACAAAATATGGCTTGTTTATACTCACTTTGAAGCTGAAAAATTTCTGATTCCAAAAAGCTAACTTTCATCCAATTTGTCTTAAACCTGCAAAAGATACAGTAGCCCTAATGATTGCCAGGTGCAATTTCTCTCGCTTCTATGTTCCATTTAAGGATTAGGACTTTTGGAAATTTCTCGAAATTTCTATGGGAAATTGCTCATTTGTGCTCATTTTAATTTTAATTTCATTTTAATTATTTGGGATTTCAAGTTTCTATGGGGGAAATTTCTCATTTCCTGTTAATCCTGCTCCTTCTCAAAATGAGCAGCTCAGAGCTCTAATGAAATATGGGGTGTCCAGGTGCAAATCTCTGCGTCTCTCATATTTTCCTTATCTCTCACTTAATCCCGAATTTCTAGAAATTTCCATTTCCTCATTTGTGCTCCTGCTAATCTATAAGCCCCGCCCATTTTCTTAGGCTCCGCCCACTTCCTTTTCTCGATAAAATGAGCAATTCCACGAATTGCTCATTCCCTATTTCACTGAATTCAAAGAAAAATCCCAAAAATGAAAATTTCTAAGATTATTTGGATTTTCTTTGATTTTTTATATTCCTAAAACTATTCTAAAATTCTTCTCAAAAACCTTAAAATGTCTCCTTAGAATGAATGGAGACTTTTAAAGTTTTAAAAAAAATTTATTTTTCTGAAAATTCCTATATGAGGTCAGTCTAAAATTACAGATTTTTTCTTGAAAAAATTCAAATTTCAGATTTTTATTTGGCTGAAAAAACTGAATGATTTTGAAATCTATCATCAAAGAAGCAGCATTGGATGACAAGGTGAGGGAAATATACATTTTTAGTGTTCAAAATTGAATTTTTCCGACTTTTTGAAAGATTCAAAAAATGCGGAAAAATCCTCAAATATTCTTGTTTAATACTAATTTT</canonical>
            <polymorphic>TACACTGGCAAAATGAAAAAAAAAATCAAAGAAAATTTTTTTAGACCCAAATTTTTCACCTAAAAATGCAACAAAATATGGCTTGTTTATACTCACTTTGAAGCTGAAAAATTTCTGATTCCAAAAAGCTAACTTTCATCCAATTTGTCTTAAACCTGCAAAAGATACAGTAGCCCTAATGATTGCCAGGTGCAATTTCTCTCGCTTCTATGTTCCATTTAAGGATTAGGACTTTTGGAAATTTCTCGAAATTTCTATGGGAAATTGCTCATTTGTGCTCATTTTAATTTTAATTTCATTTTAATTATTTGGGATTTCAAGTTTCTATGGGGGAAATTTCTCATTTCCTGTTAATCCTGCTCCTTCTCAAAATGAGCAGCTCAGAGCTCTAATGAAATATGGGGTGTCCAGGTGCAAATCTCTGCGTCTCTCATATTTTCCTTATCTCTCACTTAATCCCGAATTTCTAGAAATTTCCATTTCCTCATTTGTGCTCCTGYTAATCTATAAGCCCCGCCCATTTTCTTAGGCTCCGCCCACTTCCTTTTCTCGATAAAATGAGCAATTCCACGAATTGCTCATTCCCTATTTCACTGAATTCAAAGAAAAATCCCAAAAATGAAAATTTCTAAGATTATTTGGATTTTCTTTGATTTTTTATATTCCTAAAACTATTCTAAAATTCTTCTCAAAAACCTTAAAATGTCTCCTTAGAATGAATGGAGACTTTTAAAGTTTTAAAAAAAATTTATTTTTCTGAAAATTCCTATATGAGGTCAGTCTAAAATTACAGATTTTTTCTTGAAAAAATTCAAATTTCAGATTTTTATTTGGCTGAAAAAACTGAATGATTTTGAAATCTATCATCAAAGAAGCAGCATTGGATGACAAGGTGAGGGAAATATACATTTTTAGTGTTCAAAATTGAATTTTTCCGACTTTTTGAAAGATTCAAAAAATGCGGAAAAATCCTCAAATATTCTTGTTTAATACTAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCAGAGCTCTAATGAAATATG</pcr_primer_p1>
		<pcr_primer_p2>TTTCATTTTTGGGATTTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GCTCAGAGCTCTAATGAAATATGGGGTGTCCAGGTGCAAATCTCTGCGTCTCTCATATTTTCCTTATCTCTCACTTAATCCCGAATTTCTAGAAATTTCCATTTCCTCATTTGTGCTCCTGCTAATCTATAAGCCCCGCCCATTTTCTTAGGCTCCGCCCACTTCCTTTTCTCGATAAAATGAGCAATTCCACGAATTGCTCATTCCCTATTTCACTGAATTCAAAGAAAAATCCCAAAAATGAAA</canonical_amplicon>
		<polymorphic_amplicon>GCTCAGAGCTCTAATGAAATATGGGGTGTCCAGGTGCAAATCTCTGCGTCTCTCATATTTTCCTTATCTCTCACTTAATCCCGAATTTCTAGAAATTTCCATTTCCTCATTTGTGCTCCTGYTAATCTATAAGCCCCGCCCATTTTCTTAGGCTCCGCCCACTTCCTTTTCTCGATAAAATGAGCAATTCCACGAATTGCTCATTCCCTATTTCACTGAATTCAAAGAAAAATCCCAAAAATGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4615</snp_id>
        <super_contig>c002400855.Contig3</super_contig>
        <contig_pos>9596</contig_pos>
        <strand>+</strand>
        <context>TCCTTTTCTC[G/T]ATAAAATGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATCTATAAGCCCCGCCCATTTTCTTAGGCTCCGCCCACTTCCTTTTCTC</left_flank>
        <right_flank>ATAAAATGAGCAATTCCACGAATTGCTCATTCCCTATTTCACTGAATTCA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCACCTAAAAATGCAACAAAATATGGCTTGTTTATACTCACTTTGAAGCTGAAAAATTTCTGATTCCAAAAAGCTAACTTTCATCCAATTTGTCTTAAACCTGCAAAAGATACAGTAGCCCTAATGATTGCCAGGTGCAATTTCTCTCGCTTCTATGTTCCATTTAAGGATTAGGACTTTTGGAAATTTCTCGAAATTTCTATGGGAAATTGCTCATTTGTGCTCATTTTAATTTTAATTTCATTTTAATTATTTGGGATTTCAAGTTTCTATGGGGGAAATTTCTCATTTCCTGTTAATCCTGCTCCTTCTCAAAATGAGCAGCTCAGAGCTCTAATGAAATATGGGGTGTCCAGGTGCAAATCTCTGCGTCTCTCATATTTTCCTTATCTCTCACTTAATCCCGAATTTCTAGAAATTTCCATTTCCTCATTTGTGCTCCTGCTAATCTATAAGCCCCGCCCATTTTCTTAGGCTCCGCCCACTTCCTTTTCTCGATAAAATGAGCAATTCCACGAATTGCTCATTCCCTATTTCACTGAATTCAAAGAAAAATCCCAAAAATGAAAATTTCTAAGATTATTTGGATTTTCTTTGATTTTTTATATTCCTAAAACTATTCTAAAATTCTTCTCAAAAACCTTAAAATGTCTCCTTAGAATGAATGGAGACTTTTAAAGTTTTAAAAAAAATTTATTTTTCTGAAAATTCCTATATGAGGTCAGTCTAAAATTACAGATTTTTTCTTGAAAAAATTCAAATTTCAGATTTTTATTTGGCTGAAAAAACTGAATGATTTTGAAATCTATCATCAAAGAAGCAGCATTGGATGACAAGGTGAGGGAAATATACATTTTTAGTGTTCAAAATTGAATTTTTCCGACTTTTTGAAAGATTCAAAAAATGCGGAAAAATCCTCAAATATTCTTGTTTAATACTAATTTTTCACAATTTTTAACTAGAAAAATTGGAAAATACTAAATAAGAAAAAAAATTA</canonical>
            <polymorphic>TTTTCACCTAAAAATGCAACAAAATATGGCTTGTTTATACTCACTTTGAAGCTGAAAAATTTCTGATTCCAAAAAGCTAACTTTCATCCAATTTGTCTTAAACCTGCAAAAGATACAGTAGCCCTAATGATTGCCAGGTGCAATTTCTCTCGCTTCTATGTTCCATTTAAGGATTAGGACTTTTGGAAATTTCTCGAAATTTCTATGGGAAATTGCTCATTTGTGCTCATTTTAATTTTAATTTCATTTTAATTATTTGGGATTTCAAGTTTCTATGGGGGAAATTTCTCATTTCCTGTTAATCCTGCTCCTTCTCAAAATGAGCAGCTCAGAGCTCTAATGAAATATGGGGTGTCCAGGTGCAAATCTCTGCGTCTCTCATATTTTCCTTATCTCTCACTTAATCCCGAATTTCTAGAAATTTCCATTTCCTCATTTGTGCTCCTGCTAATCTATAAGCCCCGCCCATTTTCTTAGGCTCCGCCCACTTCCTTTTCTCKATAAAATGAGCAATTCCACGAATTGCTCATTCCCTATTTCACTGAATTCAAAGAAAAATCCCAAAAATGAAAATTTCTAAGATTATTTGGATTTTCTTTGATTTTTTATATTCCTAAAACTATTCTAAAATTCTTCTCAAAAACCTTAAAATGTCTCCTTAGAATGAATGGAGACTTTTAAAGTTTTAAAAAAAATTTATTTTTCTGAAAATTCCTATATGAGGTCAGTCTAAAATTACAGATTTTTTCTTGAAAAAATTCAAATTTCAGATTTTTATTTGGCTGAAAAAACTGAATGATTTTGAAATCTATCATCAAAGAAGCAGCATTGGATGACAAGGTGAGGGAAATATACATTTTTAGTGTTCAAAATTGAATTTTTCCGACTTTTTGAAAGATTCAAAAAATGCGGAAAAATCCTCAAATATTCTTGTTTAATACTAATTTTTCACAATTTTTAACTAGAAAAATTGGAAAATACTAAATAAGAAAAAAAATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 304 195</canonical_bands>
                <polymorphic_bands>805 195</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>252 251 213 193 82 9</canonical_bands>
                <polymorphic_bands>334 251 213 193 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGAAATTTCCATTTCCTCATT</pcr_primer_p1>
		<pcr_primer_p2>AAGGAGACATTTTAAGGTTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTAGAAATTTCCATTTCCTCATTTGTGCTCCTGCTAATCTATAAGCCCCGCCCATTTTCTTAGGCTCCGCCCACTTCCTTTTCTCGATAAAATGAGCAATTCCACGAATTGCTCATTCCCTATTTCACTGAATTCAAAGAAAAATCCCAAAAATGAAAATTTCTAAGATTATTTGGATTTTCTTTGATTTTTTATATTCCTAAAACTATTCTAAAATTCTTCTCAAAAACCTTAAAATGTCTCCTT</canonical_amplicon>
		<polymorphic_amplicon>CTAGAAATTTCCATTTCCTCATTTGTGCTCCTGCTAATCTATAAGCCCCGCCCATTTTCTTAGGCTCCGCCCACTTCCTTTTCTCKATAAAATGAGCAATTCCACGAATTGCTCATTCCCTATTTCACTGAATTCAAAGAAAAATCCCAAAAATGAAAATTTCTAAGATTATTTGGATTTTCTTTGATTTTTTATATTCCTAAAACTATTCTAAAATTCTTCTCAAAAACCTTAAAATGTCTCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4628</snp_id>
        <super_contig>c002400855.Contig3</super_contig>
        <contig_pos>9784</contig_pos>
        <strand></strand>
        <context>ttaaagtttt[A/T]aaaaaaattt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAAAACCTTAAAATGTCTCCTTAGAATGAATGGAGACTTTTAAAGTTTT</left_flank>
        <right_flank>AAAAAAATTTATTTTTCTGAAAATTCCTATATGAGGTCAGTCTAAAATTA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCTCGAAATTTCTATGGGAAATTGCTCATTTGTGCTCATTTTAATTTTAATTTCATTTTAATTATTTGGGATTTCAAGTTTCTATGGGGGAAATTTCTCATTTCCTGTTAATCCTGCTCCTTCTCAAAATGAGCAGCTCAGAGCTCTAATGAAATATGGGGTGTCCAGGTGCAAATCTCTGCGTCTCTCATATTTTCCTTATCTCTCACTTAATCCCGAATTTCTAGAAATTTCCATTTCCTCATTTGTGCTCCTGCTAATCTATAAGCCCCGCCCATTTTCTTAGGCTCCGCCCACTTCCTTTTCTCGATAAAATGAGCAATTCCACGAATTGCTCATTCCCTATTTCACTGAATTCAAAGAAAAATCCCAAAAATGAAAATTTCTAAGATTATTTGGATTTTCTTTGATTTTTTATATTCCTAAAACTATTCTAAAATTCTTCTCAAAAACCTTAAAATGTCTCCTTAGAATGAATGGAGACTTTTAAAGTTTTAAAAAAAATTTATTTTTCTGAAAATTCCTATATGAGGTCAGTCTAAAATTACAGATTTTTTCTTGAAAAAATTCAAATTTCAGATTTTTATTTGGCTGAAAAAACTGAATGATTTTGAAATCTATCATCAAAGAAGCAGCATTGGATGACAAGGTGAGGGAAATATACATTTTTAGTGTTCAAAATTGAATTTTTCCGACTTTTTGAAAGATTCAAAAAATGCGGAAAAATCCTCAAATATTCTTGTTTAATACTAATTTTTCACAATTTTTAACTAGAAAAATTGGAAAATACTAAATAAGAAAAAAAATTAAGAAAAATACGGTAGTTAATCTAAATTCGTACTATTGATCTCATATGACGGTGTAGCTTTTTTCAGAAGTTTCAGAGAAAAATTAATGTGATTTTCAGAATCAGCGTGTCTGAAAACCCCTATAAGCATATTTTCAGCGAAAAAAAAAATTTCGAATCAAAAAAATGTTTTTTTGGGACCAATAATTT</canonical>
            <polymorphic>ATTTCTCGAAATTTCTATGGGAAATTGCTCATTTGTGCTCATTTTAATTTTAATTTCATTTTAATTATTTGGGATTTCAAGTTTCTATGGGGGAAATTTCTCATTTCCTGTTAATCCTGCTCCTTCTCAAAATGAGCAGCTCAGAGCTCTAATGAAATATGGGGTGTCCAGGTGCAAATCTCTGCGTCTCTCATATTTTCCTTATCTCTCACTTAATCCCGAATTTCTAGAAATTTCCATTTCCTCATTTGTGCTCCTGCTAATCTATAAGCCCCGCCCATTTTCTTAGGCTCCGCCCACTTCCTTTTCTCGATAAAATGAGCAATTCCACGAATTGCTCATTCCCTATTTCACTGAATTCAAAGAAAAATCCCAAAAATGAAAATTTCTAAGATTATTTGGATTTTCTTTGATTTTTTATATTCCTAAAACTATTCTAAAATTCTTCTCAAAAACCTTAAAATGTCTCCTTAGAATGAATGGAGACTTTTAAAGTTTTWAAAAAAATTTATTTTTCTGAAAATTCCTATATGAGGTCAGTCTAAAATTACAGATTTTTTCTTGAAAAAATTCAAATTTCAGATTTTTATTTGGCTGAAAAAACTGAATGATTTTGAAATCTATCATCAAAGAAGCAGCATTGGATGACAAGGTGAGGGAAATATACATTTTTAGTGTTCAAAATTGAATTTTTCCGACTTTTTGAAAGATTCAAAAAATGCGGAAAAATCCTCAAATATTCTTGTTTAATACTAATTTTTCACAATTTTTAACTAGAAAAATTGGAAAATACTAAATAAGAAAAAAAATTAAGAAAAATACGGTAGTTAATCTAAATTCGTACTATTGATCTCATATGACGGTGTAGCTTTTTTCAGAAGTTTCAGAGAAAAATTAATGTGATTTTCAGAATCAGCGTGTCTGAAAACCCCTATAAGCATATTTTCAGCGAAAAAAAAAATTTCGAATCAAAAAAATGTTTTTTTGGGACCAATAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 491 8</canonical_bands>
                <polymorphic_bands>509 491</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>249 245 105 102 67 50 44 40 32 23 18 11 8 6</canonical_bands>
                <polymorphic_bands>257 245 105 102 67 50 44 40 32 23 18 11 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGATTATTTGGATTTTCTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>CTGCTTCTTTGATGATAGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGATTATTTGGATTTTCTTTGATTTTTTATATTCCTAAAACTATTCTAAAATTCTTCTCAAAAACCTTAAAATGTCTCCTTAGAATGAATGGAGACTTTTAAAGTTTTAAAAAAAATTTATTTTTCTGAAAATTCCTATATGAGGTCAGTCTAAAATTACAGATTTTTTCTTGAAAAAATTCAAATTTCAGATTTTTATTTGGCTGAAAAAACTGAATGATTTTGAAATCTATCATCAAAGAAGCAG</canonical_amplicon>
		<polymorphic_amplicon>AAGATTATTTGGATTTTCTTTGATTTTTTATATTCCTAAAACTATTCTAAAATTCTTCTCAAAAACCTTAAAATGTCTCCTTAGAATGAATGGAGACTTTTAAAGTTTTWAAAAAAATTTATTTTTCTGAAAATTCCTATATGAGGTCAGTCTAAAATTACAGATTTTTTCTTGAAAAAATTCAAATTTCAGATTTTTATTTGGCTGAAAAAACTGAATGATTTTGAAATCTATCATCAAAGAAGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4645</snp_id>
        <super_contig>c002400855.Contig3</super_contig>
        <contig_pos>9822</contig_pos>
        <strand>+</strand>
        <context>TATATGAGGT[C/G]AGTCTAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTAAAGTTTTAAAAAAAATTTATTTTTCTGAAAATTCCTATATGAGGT</left_flank>
        <right_flank>AGTCTAAAATTACAGATTTTTTCTTGAAAAAATTCAAATTTCAGATTTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATTTTAATTTTAATTTCATTTTAATTATTTGGGATTTCAAGTTTCTATGGGGGAAATTTCTCATTTCCTGTTAATCCTGCTCCTTCTCAAAATGAGCAGCTCAGAGCTCTAATGAAATATGGGGTGTCCAGGTGCAAATCTCTGCGTCTCTCATATTTTCCTTATCTCTCACTTAATCCCGAATTTCTAGAAATTTCCATTTCCTCATTTGTGCTCCTGCTAATCTATAAGCCCCGCCCATTTTCTTAGGCTCCGCCCACTTCCTTTTCTCGATAAAATGAGCAATTCCACGAATTGCTCATTCCCTATTTCACTGAATTCAAAGAAAAATCCCAAAAATGAAAATTTCTAAGATTATTTGGATTTTCTTTGATTTTTTATATTCCTAAAACTATTCTAAAATTCTTCTCAAAAACCTTAAAATGTCTCCTTAGAATGAATGGAGACTTTTAAAGTTTTAAAAAAAATTTATTTTTCTGAAAATTCCTATATGAGGTCAGTCTAAAATTACAGATTTTTTCTTGAAAAAATTCAAATTTCAGATTTTTATTTGGCTGAAAAAACTGAATGATTTTGAAATCTATCATCAAAGAAGCAGCATTGGATGACAAGGTGAGGGAAATATACATTTTTAGTGTTCAAAATTGAATTTTTCCGACTTTTTGAAAGATTCAAAAAATGCGGAAAAATCCTCAAATATTCTTGTTTAATACTAATTTTTCACAATTTTTAACTAGAAAAATTGGAAAATACTAAATAAGAAAAAAAATTAAGAAAAATACGGTAGTTAATCTAAATTCGTACTATTGATCTCATATGACGGTGTAGCTTTTTTCAGAAGTTTCAGAGAAAAATTAATGTGATTTTCAGAATCAGCGTGTCTGAAAACCCCTATAAGCATATTTTCAGCGAAAAAAAAAATTTCGAATCAAAAAAATGTTTTTTTGGGACCAATAATTTTTGCGAAAATTTCGAAAATTTTCCAGACTATGGCTTGA</canonical>
            <polymorphic>TCATTTTAATTTTAATTTCATTTTAATTATTTGGGATTTCAAGTTTCTATGGGGGAAATTTCTCATTTCCTGTTAATCCTGCTCCTTCTCAAAATGAGCAGCTCAGAGCTCTAATGAAATATGGGGTGTCCAGGTGCAAATCTCTGCGTCTCTCATATTTTCCTTATCTCTCACTTAATCCCGAATTTCTAGAAATTTCCATTTCCTCATTTGTGCTCCTGCTAATCTATAAGCCCCGCCCATTTTCTTAGGCTCCGCCCACTTCCTTTTCTCGATAAAATGAGCAATTCCACGAATTGCTCATTCCCTATTTCACTGAATTCAAAGAAAAATCCCAAAAATGAAAATTTCTAAGATTATTTGGATTTTCTTTGATTTTTTATATTCCTAAAACTATTCTAAAATTCTTCTCAAAAACCTTAAAATGTCTCCTTAGAATGAATGGAGACTTTTAAAGTTTTAAAAAAAATTTATTTTTCTGAAAATTCCTATATGAGGTSAGTCTAAAATTACAGATTTTTTCTTGAAAAAATTCAAATTTCAGATTTTTATTTGGCTGAAAAAACTGAATGATTTTGAAATCTATCATCAAAGAAGCAGCATTGGATGACAAGGTGAGGGAAATATACATTTTTAGTGTTCAAAATTGAATTTTTCCGACTTTTTGAAAGATTCAAAAAATGCGGAAAAATCCTCAAATATTCTTGTTTAATACTAATTTTTCACAATTTTTAACTAGAAAAATTGGAAAATACTAAATAAGAAAAAAAATTAAGAAAAATACGGTAGTTAATCTAAATTCGTACTATTGATCTCATATGACGGTGTAGCTTTTTTCAGAAGTTTCAGAGAAAAATTAATGTGATTTTCAGAATCAGCGTGTCTGAAAACCCCTATAAGCATATTTTCAGCGAAAAAAAAAATTTCGAATCAAAAAAATGTTTTTTTGGGACCAATAATTTTTGCGAAAATTTCGAAAATTTTCCAGACTATGGCTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGATTATTTGGATTTTCTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>CTGCTTCTTTGATGATAGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGATTATTTGGATTTTCTTTGATTTTTTATATTCCTAAAACTATTCTAAAATTCTTCTCAAAAACCTTAAAATGTCTCCTTAGAATGAATGGAGACTTTTAAAGTTTTAAAAAAAATTTATTTTTCTGAAAATTCCTATATGAGGTCAGTCTAAAATTACAGATTTTTTCTTGAAAAAATTCAAATTTCAGATTTTTATTTGGCTGAAAAAACTGAATGATTTTGAAATCTATCATCAAAGAAGCAG</canonical_amplicon>
		<polymorphic_amplicon>AAGATTATTTGGATTTTCTTTGATTTTTTATATTCCTAAAACTATTCTAAAATTCTTCTCAAAAACCTTAAAATGTCTCCTTAGAATGAATGGAGACTTTTAAAGTTTTAAAAAAAATTTATTTTTCTGAAAATTCCTATATGAGGTSAGTCTAAAATTACAGATTTTTTCTTGAAAAAATTCAAATTTCAGATTTTTATTTGGCTGAAAAAACTGAATGATTTTGAAATCTATCATCAAAGAAGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4646</snp_id>
        <super_contig>c002400855.Contig3</super_contig>
        <contig_pos>9876</contig_pos>
        <strand>+</strand>
        <context>GATTTTTATT[C/T]GGCTGAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAAAATTACAGATTTTTTCTTGAAAAAATTCAAATTTCAGATTTTTATT</left_flank>
        <right_flank>GGCTGAAAAAACTGAATGATTTTGAAATCTATCATCAAAGAAGCAGCATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATTTCTCATTTCCTGTTAATCCTGCTCCTTCTCAAAATGAGCAGCTCAGAGCTCTAATGAAATATGGGGTGTCCAGGTGCAAATCTCTGCGTCTCTCATATTTTCCTTATCTCTCACTTAATCCCGAATTTCTAGAAATTTCCATTTCCTCATTTGTGCTCCTGCTAATCTATAAGCCCCGCCCATTTTCTTAGGCTCCGCCCACTTCCTTTTCTCGATAAAATGAGCAATTCCACGAATTGCTCATTCCCTATTTCACTGAATTCAAAGAAAAATCCCAAAAATGAAAATTTCTAAGATTATTTGGATTTTCTTTGATTTTTTATATTCCTAAAACTATTCTAAAATTCTTCTCAAAAACCTTAAAATGTCTCCTTAGAATGAATGGAGACTTTTAAAGTTTTAAAAAAAATTTATTTTTCTGAAAATTCCTATATGAGGTCAGTCTAAAATTACAGATTTTTTCTTGAAAAAATTCAAATTTCAGATTTTTATTTGGCTGAAAAAACTGAATGATTTTGAAATCTATCATCAAAGAAGCAGCATTGGATGACAAGGTGAGGGAAATATACATTTTTAGTGTTCAAAATTGAATTTTTCCGACTTTTTGAAAGATTCAAAAAATGCGGAAAAATCCTCAAATATTCTTGTTTAATACTAATTTTTCACAATTTTTAACTAGAAAAATTGGAAAATACTAAATAAGAAAAAAAATTAAGAAAAATACGGTAGTTAATCTAAATTCGTACTATTGATCTCATATGACGGTGTAGCTTTTTTCAGAAGTTTCAGAGAAAAATTAATGTGATTTTCAGAATCAGCGTGTCTGAAAACCCCTATAAGCATATTTTCAGCGAAAAAAAAAATTTCGAATCAAAAAAATGTTTTTTTGGGACCAATAATTTTTGCGAAAATTTCGAAAATTTTCCAGACTATGGCTTGATTATACTCATTTTGAAGCCTATCATTTACTGATTTTGAAAATATAAAAAATATT</canonical>
            <polymorphic>GAAATTTCTCATTTCCTGTTAATCCTGCTCCTTCTCAAAATGAGCAGCTCAGAGCTCTAATGAAATATGGGGTGTCCAGGTGCAAATCTCTGCGTCTCTCATATTTTCCTTATCTCTCACTTAATCCCGAATTTCTAGAAATTTCCATTTCCTCATTTGTGCTCCTGCTAATCTATAAGCCCCGCCCATTTTCTTAGGCTCCGCCCACTTCCTTTTCTCGATAAAATGAGCAATTCCACGAATTGCTCATTCCCTATTTCACTGAATTCAAAGAAAAATCCCAAAAATGAAAATTTCTAAGATTATTTGGATTTTCTTTGATTTTTTATATTCCTAAAACTATTCTAAAATTCTTCTCAAAAACCTTAAAATGTCTCCTTAGAATGAATGGAGACTTTTAAAGTTTTAAAAAAAATTTATTTTTCTGAAAATTCCTATATGAGGTCAGTCTAAAATTACAGATTTTTTCTTGAAAAAATTCAAATTTCAGATTTTTATTYGGCTGAAAAAACTGAATGATTTTGAAATCTATCATCAAAGAAGCAGCATTGGATGACAAGGTGAGGGAAATATACATTTTTAGTGTTCAAAATTGAATTTTTCCGACTTTTTGAAAGATTCAAAAAATGCGGAAAAATCCTCAAATATTCTTGTTTAATACTAATTTTTCACAATTTTTAACTAGAAAAATTGGAAAATACTAAATAAGAAAAAAAATTAAGAAAAATACGGTAGTTAATCTAAATTCGTACTATTGATCTCATATGACGGTGTAGCTTTTTTCAGAAGTTTCAGAGAAAAATTAATGTGATTTTCAGAATCAGCGTGTCTGAAAACCCCTATAAGCATATTTTCAGCGAAAAAAAAAATTTCGAATCAAAAAAATGTTTTTTTGGGACCAATAATTTTTGCGAAAATTTCGAAAATTTTCCAGACTATGGCTTGATTATACTCATTTTGAAGCCTATCATTTACTGATTTTGAAAATATAAAAAATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATGTCTCCTTAGAATGAATG</pcr_primer_p1>
		<pcr_primer_p2>CTTTCAAAAAGTCGGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATGTCTCCTTAGAATGAATGGAGACTTTTAAAGTTTTAAAAAAAATTTATTTTTCTGAAAATTCCTATATGAGGTCAGTCTAAAATTACAGATTTTTTCTTGAAAAAATTCAAATTTCAGATTTTTATTTGGCTGAAAAAACTGAATGATTTTGAAATCTATCATCAAAGAAGCAGCATTGGATGACAAGGTGAGGGAAATATACATTTTTAGTGTTCAAAATTGAATTTTTCCGACTTTTTGAAAG</canonical_amplicon>
		<polymorphic_amplicon>AAAATGTCTCCTTAGAATGAATGGAGACTTTTAAAGTTTTAAAAAAAATTTATTTTTCTGAAAATTCCTATATGAGGTCAGTCTAAAATTACAGATTTTTTCTTGAAAAAATTCAAATTTCAGATTTTTATTYGGCTGAAAAAACTGAATGATTTTGAAATCTATCATCAAAGAAGCAGCATTGGATGACAAGGTGAGGGAAATATACATTTTTAGTGTTCAAAATTGAATTTTTCCGACTTTTTGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4647</snp_id>
        <super_contig>c002400855.Contig3</super_contig>
        <contig_pos>9889</contig_pos>
        <strand>+</strand>
        <context>CTGAAAAAAC[C/T]GAATGATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTCTTGAAAAAATTCAAATTTCAGATTTTTATTTGGCTGAAAAAAC</left_flank>
        <right_flank>GAATGATTTTGAAATCTATCATCAAAGAAGCAGCATTGGATGACAAGGTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTGTTAATCCTGCTCCTTCTCAAAATGAGCAGCTCAGAGCTCTAATGAAATATGGGGTGTCCAGGTGCAAATCTCTGCGTCTCTCATATTTTCCTTATCTCTCACTTAATCCCGAATTTCTAGAAATTTCCATTTCCTCATTTGTGCTCCTGCTAATCTATAAGCCCCGCCCATTTTCTTAGGCTCCGCCCACTTCCTTTTCTCGATAAAATGAGCAATTCCACGAATTGCTCATTCCCTATTTCACTGAATTCAAAGAAAAATCCCAAAAATGAAAATTTCTAAGATTATTTGGATTTTCTTTGATTTTTTATATTCCTAAAACTATTCTAAAATTCTTCTCAAAAACCTTAAAATGTCTCCTTAGAATGAATGGAGACTTTTAAAGTTTTAAAAAAAATTTATTTTTCTGAAAATTCCTATATGAGGTCAGTCTAAAATTACAGATTTTTTCTTGAAAAAATTCAAATTTCAGATTTTTATTTGGCTGAAAAAACTGAATGATTTTGAAATCTATCATCAAAGAAGCAGCATTGGATGACAAGGTGAGGGAAATATACATTTTTAGTGTTCAAAATTGAATTTTTCCGACTTTTTGAAAGATTCAAAAAATGCGGAAAAATCCTCAAATATTCTTGTTTAATACTAATTTTTCACAATTTTTAACTAGAAAAATTGGAAAATACTAAATAAGAAAAAAAATTAAGAAAAATACGGTAGTTAATCTAAATTCGTACTATTGATCTCATATGACGGTGTAGCTTTTTTCAGAAGTTTCAGAGAAAAATTAATGTGATTTTCAGAATCAGCGTGTCTGAAAACCCCTATAAGCATATTTTCAGCGAAAAAAAAAATTTCGAATCAAAAAAATGTTTTTTTGGGACCAATAATTTTTGCGAAAATTTCGAAAATTTTCCAGACTATGGCTTGATTATACTCATTTTGAAGCCTATCATTTACTGATTTTGAAAATATAAAAAATATTTAATTTGGCAGAA</canonical>
            <polymorphic>TCCTGTTAATCCTGCTCCTTCTCAAAATGAGCAGCTCAGAGCTCTAATGAAATATGGGGTGTCCAGGTGCAAATCTCTGCGTCTCTCATATTTTCCTTATCTCTCACTTAATCCCGAATTTCTAGAAATTTCCATTTCCTCATTTGTGCTCCTGCTAATCTATAAGCCCCGCCCATTTTCTTAGGCTCCGCCCACTTCCTTTTCTCGATAAAATGAGCAATTCCACGAATTGCTCATTCCCTATTTCACTGAATTCAAAGAAAAATCCCAAAAATGAAAATTTCTAAGATTATTTGGATTTTCTTTGATTTTTTATATTCCTAAAACTATTCTAAAATTCTTCTCAAAAACCTTAAAATGTCTCCTTAGAATGAATGGAGACTTTTAAAGTTTTAAAAAAAATTTATTTTTCTGAAAATTCCTATATGAGGTCAGTCTAAAATTACAGATTTTTTCTTGAAAAAATTCAAATTTCAGATTTTTATTTGGCTGAAAAAACYGAATGATTTTGAAATCTATCATCAAAGAAGCAGCATTGGATGACAAGGTGAGGGAAATATACATTTTTAGTGTTCAAAATTGAATTTTTCCGACTTTTTGAAAGATTCAAAAAATGCGGAAAAATCCTCAAATATTCTTGTTTAATACTAATTTTTCACAATTTTTAACTAGAAAAATTGGAAAATACTAAATAAGAAAAAAAATTAAGAAAAATACGGTAGTTAATCTAAATTCGTACTATTGATCTCATATGACGGTGTAGCTTTTTTCAGAAGTTTCAGAGAAAAATTAATGTGATTTTCAGAATCAGCGTGTCTGAAAACCCCTATAAGCATATTTTCAGCGAAAAAAAAAATTTCGAATCAAAAAAATGTTTTTTTGGGACCAATAATTTTTGCGAAAATTTCGAAAATTTTCCAGACTATGGCTTGATTATACTCATTTTGAAGCCTATCATTTACTGATTTTGAAAATATAAAAAATATTTAATTTGGCAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATGTCTCCTTAGAATGAATG</pcr_primer_p1>
		<pcr_primer_p2>CTTTCAAAAAGTCGGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATGTCTCCTTAGAATGAATGGAGACTTTTAAAGTTTTAAAAAAAATTTATTTTTCTGAAAATTCCTATATGAGGTCAGTCTAAAATTACAGATTTTTTCTTGAAAAAATTCAAATTTCAGATTTTTATTTGGCTGAAAAAACTGAATGATTTTGAAATCTATCATCAAAGAAGCAGCATTGGATGACAAGGTGAGGGAAATATACATTTTTAGTGTTCAAAATTGAATTTTTCCGACTTTTTGAAAG</canonical_amplicon>
		<polymorphic_amplicon>AAAATGTCTCCTTAGAATGAATGGAGACTTTTAAAGTTTTAAAAAAAATTTATTTTTCTGAAAATTCCTATATGAGGTCAGTCTAAAATTACAGATTTTTTCTTGAAAAAATTCAAATTTCAGATTTTTATTTGGCTGAAAAAACYGAATGATTTTGAAATCTATCATCAAAGAAGCAGCATTGGATGACAAGGTGAGGGAAATATACATTTTTAGTGTTCAAAATTGAATTTTTCCGACTTTTTGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4650</snp_id>
        <super_contig>c002400855.Contig3</super_contig>
        <contig_pos>12725</contig_pos>
        <strand>+</strand>
        <context>TCGGTGTCAA[A/C]AATGTCCCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTACGGTAATCTGAAGGAGTACGAAATGTCTGTTCGCGTATCGGTGTCAA</left_flank>
        <right_flank>AATGTCCCAAACGAACAGAAAACTTTTTTGTAAATGAACGAAAAGTGGCA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAATGTCTCAACGGATCGATCAAACTGTAATAGACAGGTTGAAACAACTTACAATCCAATACAAAATAGGTGAGAAAATAACAATCCAAGCTTAAATGTAGGTTTTTTGAAATTTCAGAACATATTGACCAAAATGAATACCGGGTAATTGATCAAAAAGATGGAAATGTGAGAAGTTGGAGCTTTTGCAGATGTTTTTGAGGGGTAAGAAGTGTGATTTTTGAAATCAGCGTGTCTGAAAACCCCTAGAAGCTTATTTTCAGAAAAAAAATTTTTGGACCCAAAAATTTTTTTTTCGAAATTTTCAAAGTTTTCCAAAATATGGCTTGTTTATACTCATTTTAAAGGAAATTTTGAACTGATTTCAAATTTCACATTTTCAACATTAAAAAAATCAAAACTCAAGCGTTTTTTCAGGACAAACTGATTGAGAAAAATCCGCACTTATTACGGTAATCTGAAGGAGTACGAAATGTCTGTTCGCGTATCGGTGTCAACAATGTCCCAAACGAACAGAAAACTTTTTTGTAAATGAACGAAAAGTGGCAAAATGAGATAATAAAGAAAATTGATAAAAATTGGATTCTATCACATCAACCTGGACTTATACCTCAAACACCCGTTCTCAAAGGTAGGAAAAGTGGAATTTTTCAGTTTTAATGAAGCAAATGAATGTAATTTTTGGAATCAGCGTGTCTGAAAACCACTAAAAGCAATTCTTCAAAAAAAAGTGGAAAAAAAAATTCTGGACCCAAAAATTTTTTTTCGCAATTTTCAAATTTTTCCAAGCTATGGCTTGTTTATACTCATTTTAAAGGTAATTTTGAGCTGATTTCAAATTTTACATTTTCAGCATCCGAAAATCATCCGTTCTCAAATTTGAGCGATGAGTTACAAGACAAGTTGGAGGAACTCAATCGGGTATATCCAAACGGAAATGTTCCAGAATTATCTCAAAATTGATTAATAAGCGGGCTGGCGCTGCGGATCAAGCAAGT</canonical>
            <polymorphic>TGAAATGTCTCAACGGATCGATCAAACTGTAATAGACAGGTTGAAACAACTTACAATCCAATACAAAATAGGTGAGAAAATAACAATCCAAGCTTAAATGTAGGTTTTTTGAAATTTCAGAACATATTGACCAAAATGAATACCGGGTAATTGATCAAAAAGATGGAAATGTGAGAAGTTGGAGCTTTTGCAGATGTTTTTGAGGGGTAAGAAGTGTGATTTTTGAAATCAGCGTGTCTGAAAACCCCTAGAAGCTTATTTTCAGAAAAAAAATTTTTGGACCCAAAAATTTTTTTTTCGAAATTTTCAAAGTTTTCCAAAATATGGCTTGTTTATACTCATTTTAAAGGAAATTTTGAACTGATTTCAAATTTCACATTTTCAACATTAAAAAAATCAAAACTCAAGCGTTTTTTCAGGACAAACTGATTGAGAAAAATCCGCACTTATTACGGTAATCTGAAGGAGTACGAAATGTCTGTTCGCGTATCGGTGTCAAMAATGTCCCAAACGAACAGAAAACTTTTTTGTAAATGAACGAAAAGTGGCAAAATGAGATAATAAAGAAAATTGATAAAAATTGGATTCTATCACATCAACCTGGACTTATACCTCAAACACCCGTTCTCAAAGGTAGGAAAAGTGGAATTTTTCAGTTTTAATGAAGCAAATGAATGTAATTTTTGGAATCAGCGTGTCTGAAAACCACTAAAAGCAATTCTTCAAAAAAAAGTGGAAAAAAAAATTCTGGACCCAAAAATTTTTTTTCGCAATTTTCAAATTTTTCCAAGCTATGGCTTGTTTATACTCATTTTAAAGGTAATTTTGAGCTGATTTCAAATTTTACATTTTCAGCATCCGAAAATCATCCGTTCTCAAATTTGAGCGATGAGTTACAAGACAAGTTGGAGGAACTCAATCGGGTATATCCAAACGGAAATGTTCCAGAATTATCTCAAAATTGATTAATAAGCGGGCTGGCGCTGCGGATCAAGCAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGACAAACTGATTGAGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCATTAAAACTGAAAAATTCCAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGGACAAACTGATTGAGAAAAATCCGCACTTATTACGGTAATCTGAAGGAGTACGAAATGTCTGTTCGCGTATCGGTGTCAACAATGTCCCAAACGAACAGAAAACTTTTTTGTAAATGAACGAAAAGTGGCAAAATGAGATAATAAAGAAAATTGATAAAAATTGGATTCTATCACATCAACCTGGACTTATACCTCAAACACCCGTTCTCAAAGGTAGGAAAAGTGGAATTTTTCAGTTTTAATGA</canonical_amplicon>
		<polymorphic_amplicon>AGGACAAACTGATTGAGAAAAATCCGCACTTATTACGGTAATCTGAAGGAGTACGAAATGTCTGTTCGCGTATCGGTGTCAAMAATGTCCCAAACGAACAGAAAACTTTTTTGTAAATGAACGAAAAGTGGCAAAATGAGATAATAAAGAAAATTGATAAAAATTGGATTCTATCACATCAACCTGGACTTATACCTCAAACACCCGTTCTCAAAGGTAGGAAAAGTGGAATTTTTCAGTTTTAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4651</snp_id>
        <super_contig>c002500822.Contig1</super_contig>
        <contig_pos>9494</contig_pos>
        <strand>+</strand>
        <context>AATCCAATAT[A/C]AGTAATTTtc</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAGCTGCTATCTATAAGTGAGTTTTCATTCTGATTTTTTAAATCCAATAT</left_flank>
        <right_flank>AGTAATTTTCGTCAGATTGGTAGTGGGAATTTCGAAAATCCCATTGAGCC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTTTGGCCGAAGCTGTTCTTCCAATCTCGCCAATTTCTCAAAGAAGAATCGGAATGTATTTTGAAGTGGAGTGCGATGTTCATGGCAACTCTTTCTTCTATGCTGATATCATGGATAACACTATTTATAGGTATGATTTTGAATTTAAAACCCTCCCCCCTTGTTCAAAATGACCATTCAGAATCCGCCCCGATGGAGAAGGATCAGCGCCAGTGCTAGTCACTCATAACGATGGACTCTTCTCAATGTCCTTTGACTGGATTAGCAAGCAATTGTACTATGTAGACAATATTAGAAACAGTTTGGAGGTTGTGAAAATTGGAGAAACTGGATTGGTTCAACCGGATGAGTTGGTTAGAAGACAACTGCTCACAGAGCTCAGAGATCCAGTATCAGTGGTTGTGCATCCATGGAAGGGATTGTTGTTCTATGCAGAGGCAATGAGACCAGCTGCTATCTATAAGTGAGTTTTCATTCTGATTTTTTAAATCCAATATCAGTAATTTTCGTCAGATTGGTAGTGGGAATTTCGAAAATCCCATTGAGCCACCTGTGCAATTTTTATTTAAAAAATAATAAAAATGCAGAAAAAGAGTGCATAAGATAGTTATTTTTAGCACATGTTATTTGATAAAAAACGTTTTTGAGAGATTTTAAACTTGACAAAAAGTTTTTTTCTGAAAATTTCAGGTTTTCCAAAATTTAGAGTTTTTAGTCGATAGTCACCAACATGTCAACTTTAAGCCACTGTTCCTCGGTTCCTGGGAGAGATATCAAAATTTTGTCAACGGATAAATTATTTATCATAATATCCCCAATATTTTCTCAGTTGACAAATTTTTGATATCCCTTAAAGGAACCGAGATAATTGATCTCAGAGTGCAGGCTTCCATTAGAGCATATACGGTAGCTACATCTAGGAAAGTTCGGCCTGCCCGTTACAGTTAAAGGATAATAGCTTAAAGAGAAAAAATTCAAAATTCGGATTCTAACAAATC</canonical>
            <polymorphic>GGCTTTGGCCGAAGCTGTTCTTCCAATCTCGCCAATTTCTCAAAGAAGAATCGGAATGTATTTTGAAGTGGAGTGCGATGTTCATGGCAACTCTTTCTTCTATGCTGATATCATGGATAACACTATTTATAGGTATGATTTTGAATTTAAAACCCTCCCCCCTTGTTCAAAATGACCATTCAGAATCCGCCCCGATGGAGAAGGATCAGCGCCAGTGCTAGTCACTCATAACGATGGACTCTTCTCAATGTCCTTTGACTGGATTAGCAAGCAATTGTACTATGTAGACAATATTAGAAACAGTTTGGAGGTTGTGAAAATTGGAGAAACTGGATTGGTTCAACCGGATGAGTTGGTTAGAAGACAACTGCTCACAGAGCTCAGAGATCCAGTATCAGTGGTTGTGCATCCATGGAAGGGATTGTTGTTCTATGCAGAGGCAATGAGACCAGCTGCTATCTATAAGTGAGTTTTCATTCTGATTTTTTAAATCCAATATMAGTAATTTTCGTCAGATTGGTAGTGGGAATTTCGAAAATCCCATTGAGCCACCTGTGCAATTTTTATTTAAAAAATAATAAAAATGCAGAAAAAGAGTGCATAAGATAGTTATTTTTAGCACATGTTATTTGATAAAAAACGTTTTTGAGAGATTTTAAACTTGACAAAAAGTTTTTTTCTGAAAATTTCAGGTTTTCCAAAATTTAGAGTTTTTAGTCGATAGTCACCAACATGTCAACTTTAAGCCACTGTTCCTCGGTTCCTGGGAGAGATATCAAAATTTTGTCAACGGATAAATTATTTATCATAATATCCCCAATATTTTCTCAGTTGACAAATTTTTGATATCCCTTAAAGGAACCGAGATAATTGATCTCAGAGTGCAGGCTTCCATTAGAGCATATACGGTAGCTACATCTAGGAAAGTTCGGCCTGCCCGTTACAGTTAAAGGATAATAGCTTAAAGAGAAAAAATTCAAAATTCGGATTCTAACAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCCAGTATCAGTGGTTGTG</pcr_primer_p1>
		<pcr_primer_p2>TCAAATAACATGTGCTAAAAATAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATCCAGTATCAGTGGTTGTGCATCCATGGAAGGGATTGTTGTTCTATGCAGAGGCAATGAGACCAGCTGCTATCTATAAGTGAGTTTTCATTCTGATTTTTTAAATCCAATATCAGTAATTTTCGTCAGATTGGTAGTGGGAATTTCGAAAATCCCATTGAGCCACCTGTGCAATTTTTATTTAAAAAATAATAAAAATGCAGAAAAAGAGTGCATAAGATAGTTATTTTTAGCACATGTTATTTGA</canonical_amplicon>
		<polymorphic_amplicon>GATCCAGTATCAGTGGTTGTGCATCCATGGAAGGGATTGTTGTTCTATGCAGAGGCAATGAGACCAGCTGCTATCTATAAGTGAGTTTTCATTCTGATTTTTTAAATCCAATATMAGTAATTTTCGTCAGATTGGTAGTGGGAATTTCGAAAATCCCATTGAGCCACCTGTGCAATTTTTATTTAAAAAATAATAAAAATGCAGAAAAAGAGTGCATAAGATAGTTATTTTTAGCACATGTTATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4652</snp_id>
        <super_contig>c002500822.Contig1</super_contig>
        <contig_pos>78365</contig_pos>
        <strand>+</strand>
        <context>TCATTCAGCT[C/G]ATAGGGTCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AACCTCCCTGAGACCTCATTCTTTTAGTCTCTTAACCTAATCATTCAGCT</left_flank>
        <right_flank>ATAGGGTCAACACGCTTCCACAATTTTCTCGCATTTCGTCGTGGCAAAAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGGTGTCCAGCCGAGGGGTCGACCCGATTAAATGAAAATGAGACGGGCGGTGTGGTTAGTTGGTTGGGAGATGGTGTAAAATCCGAGAAATAGTATTAAAAATGGTGGAGGGTCGGCTAGAGAAAACAGCGCTGACAAGAAAACTACGAATAAAAATGCGGAAAAAAGAAGTGTGTCCTCCGTCCCGTCTACACTCTATATGCATTTTTATACTCAAAACATCTTTTCCTCCCACTGTCTGTCTAACTATTATTTGTGATTCTTGCTGATCACCTAAAATTTTGAATTCCGAGAAACTGGACACACCGACTCACAGACAGACTTTCCAGACAAATTTAAACCTAGAGACTCACCGAGATGGGACCGAAATTTCCAGTAAACTGACGAGAACAAAAAAAAAAGGTTTTTCGCTTCATCAGCCATCTCTGATGCCAGCGTGGATAGCTTAACCTCCCTGAGACCTCATTCTTTTAGTCTCTTAACCTAATCATTCAGCTCATAGGGTCAACACGCTTCCACAATTTTCTCGCATTTCGTCGTGGCAAAAGTGGGCGGAGCTTAAGAATTATAGTCAGTGGAGACACCCAAGAACATCATATTCCATCCCAAACAGTGAGAGGAGAAGTGGGCGGAGCCTAATTCGAAAAGTCAGGTGCTCAGTTGCTTCGTTGTTGTACAACTCCCAAAGTGGCAAAAGTGGGCGGAGCCTATGGCAAGACTTTTAGTCGATCCTTGTTAACCTATCCCAGCAAACCTTCAGAACAGTGGGCGGAGCCAATTTTAGAAATTTCTTGATTTTTCTAATTCTTTATGCTATTACAACTCGACCAAAAAAGGGGCGGGGCTTCGGTGAAGTGGGCGGAGCCTCGGCTCTTGATTTTCTACAATTCAAAGAGCATGTTCAGTGGGCGGAGCTTCGAGTATTACAAATTCCGAAACTCCGAAACTTGAGTCCTTCCGAAAATTCAAATTTCATGTGTTTTTTTTCTGACGAAACC</canonical>
            <polymorphic>AAAGGTGTCCAGCCGAGGGGTCGACCCGATTAAATGAAAATGAGACGGGCGGTGTGGTTAGTTGGTTGGGAGATGGTGTAAAATCCGAGAAATAGTATTAAAAATGGTGGAGGGTCGGCTAGAGAAAACAGCGCTGACAAGAAAACTACGAATAAAAATGCGGAAAAAAGAAGTGTGTCCTCCGTCCCGTCTACACTCTATATGCATTTTTATACTCAAAACATCTTTTCCTCCCACTGTCTGTCTAACTATTATTTGTGATTCTTGCTGATCACCTAAAATTTTGAATTCCGAGAAACTGGACACACCGACTCACAGACAGACTTTCCAGACAAATTTAAACCTAGAGACTCACCGAGATGGGACCGAAATTTCCAGTAAACTGACGAGAACAAAAAAAAAAGGTTTTTCGCTTCATCAGCCATCTCTGATGCCAGCGTGGATAGCTTAACCTCCCTGAGACCTCATTCTTTTAGTCTCTTAACCTAATCATTCAGCTSATAGGGTCAACACGCTTCCACAATTTTCTCGCATTTCGTCGTGGCAAAAGTGGGCGGAGCTTAAGAATTATAGTCAGTGGAGACACCCAAGAACATCATATTCCATCCCAAACAGTGAGAGGAGAAGTGGGCGGAGCCTAATTCGAAAAGTCAGGTGCTCAGTTGCTTCGTTGTTGTACAACTCCCAAAGTGGCAAAAGTGGGCGGAGCCTATGGCAAGACTTTTAGTCGATCCTTGTTAACCTATCCCAGCAAACCTTCAGAACAGTGGGCGGAGCCAATTTTAGAAATTTCTTGATTTTTCTAATTCTTTATGCTATTACAACTCGACCAAAAAAGGGGCGGGGCTTCGGTGAAGTGGGCGGAGCCTCGGCTCTTGATTTTCTACAATTCAAAGAGCATGTTCAGTGGGCGGAGCTTCGAGTATTACAAATTCCGAAACTCCGAAACTTGAGTCCTTCCGAAAATTCAAATTTCATGTGTTTTTTTTCTGACGAAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACCTAGAGACTCACCGAGAT</pcr_primer_p1>
		<pcr_primer_p2>GGTGTCTCCACTGACTATAATTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAACCTAGAGACTCACCGAGATGGGACCGAAATTTCCAGTAAACTGACGAGAACAAAAAAAAAAGGTTTTTCGCTTCATCAGCCATCTCTGATGCCAGCGTGGATAGCTTAACCTCCCTGAGACCTCATTCTTTTAGTCTCTTAACCTAATCATTCAGCTCATAGGGTCAACACGCTTCCACAATTTTCTCGCATTTCGTCGTGGCAAAAGTGGGCGGAGCTTAAGAATTATAGTCAGTGGAGACACC</canonical_amplicon>
		<polymorphic_amplicon>AAACCTAGAGACTCACCGAGATGGGACCGAAATTTCCAGTAAACTGACGAGAACAAAAAAAAAAGGTTTTTCGCTTCATCAGCCATCTCTGATGCCAGCGTGGATAGCTTAACCTCCCTGAGACCTCATTCTTTTAGTCTCTTAACCTAATCATTCAGCTSATAGGGTCAACACGCTTCCACAATTTTCTCGCATTTCGTCGTGGCAAAAGTGGGCGGAGCTTAAGAATTATAGTCAGTGGAGACACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4653</snp_id>
        <super_contig>c002500822.Contig1</super_contig>
        <contig_pos>78428</contig_pos>
        <strand>+</strand>
        <context>GGCGGAGCTT[A/G]AGAATTATAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCTTCCACAATTTTCTCGCATTTCGTCGTGGCAAAAGTGGGCGGAGCTT</left_flank>
        <right_flank>AGAATTATAGTCAGTGGAGACACCCAAGAACATCATATTCCATCCCAAAC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTGGGAGATGGTGTAAAATCCGAGAAATAGTATTAAAAATGGTGGAGGGTCGGCTAGAGAAAACAGCGCTGACAAGAAAACTACGAATAAAAATGCGGAAAAAAGAAGTGTGTCCTCCGTCCCGTCTACACTCTATATGCATTTTTATACTCAAAACATCTTTTCCTCCCACTGTCTGTCTAACTATTATTTGTGATTCTTGCTGATCACCTAAAATTTTGAATTCCGAGAAACTGGACACACCGACTCACAGACAGACTTTCCAGACAAATTTAAACCTAGAGACTCACCGAGATGGGACCGAAATTTCCAGTAAACTGACGAGAACAAAAAAAAAAGGTTTTTCGCTTCATCAGCCATCTCTGATGCCAGCGTGGATAGCTTAACCTCCCTGAGACCTCATTCTTTTAGTCTCTTAACCTAATCATTCAGCTCATAGGGTCAACACGCTTCCACAATTTTCTCGCATTTCGTCGTGGCAAAAGTGGGCGGAGCTTAAGAATTATAGTCAGTGGAGACACCCAAGAACATCATATTCCATCCCAAACAGTGAGAGGAGAAGTGGGCGGAGCCTAATTCGAAAAGTCAGGTGCTCAGTTGCTTCGTTGTTGTACAACTCCCAAAGTGGCAAAAGTGGGCGGAGCCTATGGCAAGACTTTTAGTCGATCCTTGTTAACCTATCCCAGCAAACCTTCAGAACAGTGGGCGGAGCCAATTTTAGAAATTTCTTGATTTTTCTAATTCTTTATGCTATTACAACTCGACCAAAAAAGGGGCGGGGCTTCGGTGAAGTGGGCGGAGCCTCGGCTCTTGATTTTCTACAATTCAAAGAGCATGTTCAGTGGGCGGAGCTTCGAGTATTACAAATTCCGAAACTCCGAAACTTGAGTCCTTCCGAAAATTCAAATTTCATGTGTTTTTTTTCTGACGAAACCGAATAATAGATAAGCGAGTAAAAAAGGCATACATTCTTAACAAGATTAGACAAAAAAGGAGAA</canonical>
            <polymorphic>GGTTGGGAGATGGTGTAAAATCCGAGAAATAGTATTAAAAATGGTGGAGGGTCGGCTAGAGAAAACAGCGCTGACAAGAAAACTACGAATAAAAATGCGGAAAAAAGAAGTGTGTCCTCCGTCCCGTCTACACTCTATATGCATTTTTATACTCAAAACATCTTTTCCTCCCACTGTCTGTCTAACTATTATTTGTGATTCTTGCTGATCACCTAAAATTTTGAATTCCGAGAAACTGGACACACCGACTCACAGACAGACTTTCCAGACAAATTTAAACCTAGAGACTCACCGAGATGGGACCGAAATTTCCAGTAAACTGACGAGAACAAAAAAAAAAGGTTTTTCGCTTCATCAGCCATCTCTGATGCCAGCGTGGATAGCTTAACCTCCCTGAGACCTCATTCTTTTAGTCTCTTAACCTAATCATTCAGCTCATAGGGTCAACACGCTTCCACAATTTTCTCGCATTTCGTCGTGGCAAAAGTGGGCGGAGCTTRAGAATTATAGTCAGTGGAGACACCCAAGAACATCATATTCCATCCCAAACAGTGAGAGGAGAAGTGGGCGGAGCCTAATTCGAAAAGTCAGGTGCTCAGTTGCTTCGTTGTTGTACAACTCCCAAAGTGGCAAAAGTGGGCGGAGCCTATGGCAAGACTTTTAGTCGATCCTTGTTAACCTATCCCAGCAAACCTTCAGAACAGTGGGCGGAGCCAATTTTAGAAATTTCTTGATTTTTCTAATTCTTTATGCTATTACAACTCGACCAAAAAAGGGGCGGGGCTTCGGTGAAGTGGGCGGAGCCTCGGCTCTTGATTTTCTACAATTCAAAGAGCATGTTCAGTGGGCGGAGCTTCGAGTATTACAAATTCCGAAACTCCGAAACTTGAGTCCTTCCGAAAATTCAAATTTCATGTGTTTTTTTTCTGACGAAACCGAATAATAGATAAGCGAGTAAAAAAGGCATACATTCTTAACAAGATTAGACAAAAAAGGAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTTAAG</site>
                <isoschizomers>
                    <enzyme>AflII</enzyme>
                    <enzyme>BfrI</enzyme>
                    <enzyme>BspTI</enzyme>
                    <enzyme>Bst98I</enzyme>
                    <enzyme>MspCI</enzyme>
                    <enzyme>Vha464I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>299 240 177 110 80 35 33 26</canonical_bands>
                <polymorphic_bands>299 257 240 110 35 33 26</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>497 389 114</canonical_bands>
                <polymorphic_bands>886 114</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAGTAAACTGACGAGAAC</pcr_primer_p1>
		<pcr_primer_p2>ACTGTTTGGGATGGAATATG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAGTAAACTGACGAGAACAAAAAAAAAAGGTTTTTCGCTTCATCAGCCATCTCTGATGCCAGCGTGGATAGCTTAACCTCCCTGAGACCTCATTCTTTTAGTCTCTTAACCTAATCATTCAGCTCATAGGGTCAACACGCTTCCACAATTTTCTCGCATTTCGTCGTGGCAAAAGTGGGCGGAGCTTAAGAATTATAGTCAGTGGAGACACCCAAGAACATCATATTCCATCCCAAACAGT</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAGTAAACTGACGAGAACAAAAAAAAAAGGTTTTTCGCTTCATCAGCCATCTCTGATGCCAGCGTGGATAGCTTAACCTCCCTGAGACCTCATTCTTTTAGTCTCTTAACCTAATCATTCAGCTCATAGGGTCAACACGCTTCCACAATTTTCTCGCATTTCGTCGTGGCAAAAGTGGGCGGAGCTTRAGAATTATAGTCAGTGGAGACACCCAAGAACATCATATTCCATCCCAAACAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4654</snp_id>
        <super_contig>c002500822.Contig1</super_contig>
        <contig_pos>80787</contig_pos>
        <strand>+</strand>
        <context>AGAAAAAAGA[A/G]TCGATGGACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTTTTTAATTATTTTTCGAAGATTGGATGGAAAATGAGAGAAAAAAGA</left_flank>
        <right_flank>TCGATGGACAAGCACTCTTAGCGAAAAAAAAGAATCTTTTAAAGTTGAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCCAGAAAATTCCAAAAATCCTTTAAAATTTTCAAAAGTCCTAGAACACCTGGAAAACCCAAAAATTCTAAAAATTCAAGTAATCCGAAAAATCTTCAAAATTCCAAAAACCCTTCTAATTTCCACAAATTCCGAAAATCCCAAGAATTCTGAGAAATTTCACAAAAATCCCGGAAATCTTTTAAAAATTCTTCAAAATGTCTAAAATCACAAAAGAATCTAAAAATTTGAAAAAAAACTCTTTTCATTTTTTTATCAAATTTTTGGCATTTTTCAAACTAATACAAACAAAACAAATGAAAGGAATAGGCGACAAGGGGCTCCCGAGGAATTAGGAGCCAGATATATCATGTGAGAGAAGAAACGAAAACAAAAATTTTGGAAAAACAAAGAAACGACAAACATCTTTCAAAAGAATAGGAGGGAATTGTTATGCGAAATAAATAATATTTTTTAATTATTTTTCGAAGATTGGATGGAAAATGAGAGAAAAAAGAATCGATGGACAAGCACTCTTAGCGAAAAAAAAGAATCTTTTAAAGTTGAAAATCGATGAAAATTCGGTAGGAAACTTGAAAAATAGGGGAAAAAAACTGTTTTTGAACCGGCGCTAAAAGGAAAACCCAACACTTTACGACACTTTGCGGACAACACAACTTTTCGGCTTGCACTTTTCGGCTTGTACTATTTTTTTTTGAACCTTTTTTAGGCATTTTCAGCTCAAAAAATGTCAAAACGAGGTCAATCATCGTCAATGTCTTACAAAGACAAAGTAAGTCGGATTTCTTTCTAAAATACTCTTTCTTAAAAATGTATTTCCAGGCAAATCTTCACTTTGTCGAGCAAGAAGAGCCGGCATTTATTAAGGCGATAAAGGCAAAGATGGGATATAAGGAGCCGGCGAAATTGGAAGACAAAGTGGGTATTTTAACAGAAATGATTGATTTATTCTAAATTTTGAATTTTCAGTTCGACGATGAAGCAGGCCCAGCAGATTT</canonical>
            <polymorphic>ATTCCAGAAAATTCCAAAAATCCTTTAAAATTTTCAAAAGTCCTAGAACACCTGGAAAACCCAAAAATTCTAAAAATTCAAGTAATCCGAAAAATCTTCAAAATTCCAAAAACCCTTCTAATTTCCACAAATTCCGAAAATCCCAAGAATTCTGAGAAATTTCACAAAAATCCCGGAAATCTTTTAAAAATTCTTCAAAATGTCTAAAATCACAAAAGAATCTAAAAATTTGAAAAAAAACTCTTTTCATTTTTTTATCAAATTTTTGGCATTTTTCAAACTAATACAAACAAAACAAATGAAAGGAATAGGCGACAAGGGGCTCCCGAGGAATTAGGAGCCAGATATATCATGTGAGAGAAGAAACGAAAACAAAAATTTTGGAAAAACAAAGAAACGACAAACATCTTTCAAAAGAATAGGAGGGAATTGTTATGCGAAATAAATAATATTTTTTAATTATTTTTCGAAGATTGGATGGAAAATGAGAGAAAAAAGARTCGATGGACAAGCACTCTTAGCGAAAAAAAAGAATCTTTTAAAGTTGAAAATCGATGAAAATTCGGTAGGAAACTTGAAAAATAGGGGAAAAAAACTGTTTTTGAACCGGCGCTAAAAGGAAAACCCAACACTTTACGACACTTTGCGGACAACACAACTTTTCGGCTTGCACTTTTCGGCTTGTACTATTTTTTTTTGAACCTTTTTTAGGCATTTTCAGCTCAAAAAATGTCAAAACGAGGTCAATCATCGTCAATGTCTTACAAAGACAAAGTAAGTCGGATTTCTTTCTAAAATACTCTTTCTTAAAAATGTATTTCCAGGCAAATCTTCACTTTGTCGAGCAAGAAGAGCCGGCATTTATTAAGGCGATAAAGGCAAAGATGGGATATAAGGAGCCGGCGAAATTGGAAGACAAAGTGGGTATTTTAACAGAAATGATTGATTTATTCTAAATTTTGAATTTTCAGTTCGACGATGAAGCAGGCCCAGCAGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>501 448 51</canonical_bands>
                <polymorphic_bands>552 448</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>468 280 218 34</canonical_bands>
                <polymorphic_bands>468 314 218</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAGATATATCATGTGAGAGAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTCCCCTATTTTTCAAGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAGATATATCATGTGAGAGAAGAAACGAAAACAAAAATTTTGGAAAAACAAAGAAACGACAAACATCTTTCAAAAGAATAGGAGGGAATTGTTATGCGAAATAAATAATATTTTTTAATTATTTTTCGAAGATTGGATGGAAAATGAGAGAAAAAAGAATCGATGGACAAGCACTCTTAGCGAAAAAAAAGAATCTTTTAAAGTTGAAAATCGATGAAAATTCGGTAGGAAACTTGAAAAATAGGGGAA</canonical_amplicon>
		<polymorphic_amplicon>CCAGATATATCATGTGAGAGAAGAAACGAAAACAAAAATTTTGGAAAAACAAAGAAACGACAAACATCTTTCAAAAGAATAGGAGGGAATTGTTATGCGAAATAAATAATATTTTTTAATTATTTTTCGAAGATTGGATGGAAAATGAGAGAAAAAAGARTCGATGGACAAGCACTCTTAGCGAAAAAAAAGAATCTTTTAAAGTTGAAAATCGATGAAAATTCGGTAGGAAACTTGAAAAATAGGGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4665</snp_id>
        <super_contig>c002500822.Contig1</super_contig>
        <contig_pos>80744</contig_pos>
        <strand></strand>
        <context>taatattttk[T/G]aattattttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TCTTTCAAAAGAATAGGAGGGAATTGTTATGCGAAATAAATAATATTTTT</left_flank>
        <right_flank>AATTATTTTTCGAAGATTGGATGGAAAATGAGAGAAAAAAGAATCGATGG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATATTGAAACACAAGAATCCCATGAATCCGAAAAATACTGAATTCCAGAAAATTCCAAAAATCCTTTAAAATTTTCAAAAGTCCTAGAACACCTGGAAAACCCAAAAATTCTAAAAATTCAAGTAATCCGAAAAATCTTCAAAATTCCAAAAACCCTTCTAATTTCCACAAATTCCGAAAATCCCAAGAATTCTGAGAAATTTCACAAAAATCCCGGAAATCTTTTAAAAATTCTTCAAAATGTCTAAAATCACAAAAGAATCTAAAAATTTGAAAAAAAACTCTTTTCATTTTTTTATCAAATTTTTGGCATTTTTCAAACTAATACAAACAAAACAAATGAAAGGAATAGGCGACAAGGGGCTCCCGAGGAATTAGGAGCCAGATATATCATGTGAGAGAAGAAACGAAAACAAAAATTTTGGAAAAACAAAGAAACGACAAACATCTTTCAAAAGAATAGGAGGGAATTGTTATGCGAAATAAATAATATTTTTTAATTATTTTTCGAAGATTGGATGGAAAATGAGAGAAAAAAGAATCGATGGACAAGCACTCTTAGCGAAAAAAAAGAATCTTTTAAAGTTGAAAATCGATGAAAATTCGGTAGGAAACTTGAAAAATAGGGGAAAAAAACTGTTTTTGAACCGGCGCTAAAAGGAAAACCCAACACTTTACGACACTTTGCGGACAACACAACTTTTCGGCTTGCACTTTTCGGCTTGTACTATTTTTTTTTGAACCTTTTTTAGGCATTTTCAGCTCAAAAAATGTCAAAACGAGGTCAATCATCGTCAATGTCTTACAAAGACAAAGTAAGTCGGATTTCTTTCTAAAATACTCTTTCTTAAAAATGTATTTCCAGGCAAATCTTCACTTTGTCGAGCAAGAAGAGCCGGCATTTATTAAGGCGATAAAGGCAAAGATGGGATATAAGGAGCCGGCGAAATTGGAAGACAAAGTGGGTATTTTAACAGAAATGATTGATTTATTCTAAA</canonical>
            <polymorphic>AAATATTGAAACACAAGAATCCCATGAATCCGAAAAATACTGAATTCCAGAAAATTCCAAAAATCCTTTAAAATTTTCAAAAGTCCTAGAACACCTGGAAAACCCAAAAATTCTAAAAATTCAAGTAATCCGAAAAATCTTCAAAATTCCAAAAACCCTTCTAATTTCCACAAATTCCGAAAATCCCAAGAATTCTGAGAAATTTCACAAAAATCCCGGAAATCTTTTAAAAATTCTTCAAAATGTCTAAAATCACAAAAGAATCTAAAAATTTGAAAAAAAACTCTTTTCATTTTTTTATCAAATTTTTGGCATTTTTCAAACTAATACAAACAAAACAAATGAAAGGAATAGGCGACAAGGGGCTCCCGAGGAATTAGGAGCCAGATATATCATGTGAGAGAAGAAACGAAAACAAAAATTTTGGAAAAACAAAGAAACGACAAACATCTTTCAAAAGAATAGGAGGGAATTGTTATGCGAAATAAATAATATTTTTKAATTATTTTTCGAAGATTGGATGGAAAATGAGAGAAAAAAGAATCGATGGACAAGCACTCTTAGCGAAAAAAAAGAATCTTTTAAAGTTGAAAATCGATGAAAATTCGGTAGGAAACTTGAAAAATAGGGGAAAAAAACTGTTTTTGAACCGGCGCTAAAAGGAAAACCCAACACTTTACGACACTTTGCGGACAACACAACTTTTCGGCTTGCACTTTTCGGCTTGTACTATTTTTTTTTGAACCTTTTTTAGGCATTTTCAGCTCAAAAAATGTCAAAACGAGGTCAATCATCGTCAATGTCTTACAAAGACAAAGTAAGTCGGATTTCTTTCTAAAATACTCTTTCTTAAAAATGTATTTCCAGGCAAATCTTCACTTTGTCGAGCAAGAAGAGCCGGCATTTATTAAGGCGATAAAGGCAAAGATGGGATATAAGGAGCCGGCGAAATTGGAAGACAAAGTGGGTATTTTAACAGAAATGATTGATTTATTCTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>272 268 159 83 68 65 58 27</canonical_bands>
                <polymorphic_bands>355 268 159 68 65 58 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAGATATATCATGTGAGAGAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTCCCCTATTTTTCAAGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAGATATATCATGTGAGAGAAGAAACGAAAACAAAAATTTTGGAAAAACAAAGAAACGACAAACATCTTTCAAAAGAATAGGAGGGAATTGTTATGCGAAATAAATAATATTTTTTAATTATTTTTCGAAGATTGGATGGAAAATGAGAGAAAAAAGAATCGATGGACAAGCACTCTTAGCGAAAAAAAAGAATCTTTTAAAGTTGAAAATCGATGAAAATTCGGTAGGAAACTTGAAAAATAGGGGAA</canonical_amplicon>
		<polymorphic_amplicon>CCAGATATATCATGTGAGAGAAGAAACGAAAACAAAAATTTTGGAAAAACAAAGAAACGACAAACATCTTTCAAAAGAATAGGAGGGAATTGTTATGCGAAATAAATAATATTTTTKAATTATTTTTCGAAGATTGGATGGAAAATGAGAGAAAAAAGAATCGATGGACAAGCACTCTTAGCGAAAAAAAAGAATCTTTTAAAGTTGAAAATCGATGAAAATTCGGTAGGAAACTTGAAAAATAGGGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4666</snp_id>
        <super_contig>c002500822.Contig1</super_contig>
        <contig_pos>80743</contig_pos>
        <strand></strand>
        <context>ataatatttt[T/G]kaattatttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATCTTTCAAAAGAATAGGAGGGAATTGTTATGCGAAATAAATAATATTTT</left_flank>
        <right_flank>TAATTATTTTTCGAAGATTGGATGGAAAATGAGAGAAAAAAGAATCGATG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAATATTGAAACACAAGAATCCCATGAATCCGAAAAATACTGAATTCCAGAAAATTCCAAAAATCCTTTAAAATTTTCAAAAGTCCTAGAACACCTGGAAAACCCAAAAATTCTAAAAATTCAAGTAATCCGAAAAATCTTCAAAATTCCAAAAACCCTTCTAATTTCCACAAATTCCGAAAATCCCAAGAATTCTGAGAAATTTCACAAAAATCCCGGAAATCTTTTAAAAATTCTTCAAAATGTCTAAAATCACAAAAGAATCTAAAAATTTGAAAAAAAACTCTTTTCATTTTTTTATCAAATTTTTGGCATTTTTCAAACTAATACAAACAAAACAAATGAAAGGAATAGGCGACAAGGGGCTCCCGAGGAATTAGGAGCCAGATATATCATGTGAGAGAAGAAACGAAAACAAAAATTTTGGAAAAACAAAGAAACGACAAACATCTTTCAAAAGAATAGGAGGGAATTGTTATGCGAAATAAATAATATTTTTTAATTATTTTTCGAAGATTGGATGGAAAATGAGAGAAAAAAGAATCGATGGACAAGCACTCTTAGCGAAAAAAAAGAATCTTTTAAAGTTGAAAATCGATGAAAATTCGGTAGGAAACTTGAAAAATAGGGGAAAAAAACTGTTTTTGAACCGGCGCTAAAAGGAAAACCCAACACTTTACGACACTTTGCGGACAACACAACTTTTCGGCTTGCACTTTTCGGCTTGTACTATTTTTTTTTGAACCTTTTTTAGGCATTTTCAGCTCAAAAAATGTCAAAACGAGGTCAATCATCGTCAATGTCTTACAAAGACAAAGTAAGTCGGATTTCTTTCTAAAATACTCTTTCTTAAAAATGTATTTCCAGGCAAATCTTCACTTTGTCGAGCAAGAAGAGCCGGCATTTATTAAGGCGATAAAGGCAAAGATGGGATATAAGGAGCCGGCGAAATTGGAAGACAAAGTGGGTATTTTAACAGAAATGATTGATTTATTCTAA</canonical>
            <polymorphic>GAAATATTGAAACACAAGAATCCCATGAATCCGAAAAATACTGAATTCCAGAAAATTCCAAAAATCCTTTAAAATTTTCAAAAGTCCTAGAACACCTGGAAAACCCAAAAATTCTAAAAATTCAAGTAATCCGAAAAATCTTCAAAATTCCAAAAACCCTTCTAATTTCCACAAATTCCGAAAATCCCAAGAATTCTGAGAAATTTCACAAAAATCCCGGAAATCTTTTAAAAATTCTTCAAAATGTCTAAAATCACAAAAGAATCTAAAAATTTGAAAAAAAACTCTTTTCATTTTTTTATCAAATTTTTGGCATTTTTCAAACTAATACAAACAAAACAAATGAAAGGAATAGGCGACAAGGGGCTCCCGAGGAATTAGGAGCCAGATATATCATGTGAGAGAAGAAACGAAAACAAAAATTTTGGAAAAACAAAGAAACGACAAACATCTTTCAAAAGAATAGGAGGGAATTGTTATGCGAAATAAATAATATTTTKTAATTATTTTTCGAAGATTGGATGGAAAATGAGAGAAAAAAGAATCGATGGACAAGCACTCTTAGCGAAAAAAAAGAATCTTTTAAAGTTGAAAATCGATGAAAATTCGGTAGGAAACTTGAAAAATAGGGGAAAAAAACTGTTTTTGAACCGGCGCTAAAAGGAAAACCCAACACTTTACGACACTTTGCGGACAACACAACTTTTCGGCTTGCACTTTTCGGCTTGTACTATTTTTTTTTGAACCTTTTTTAGGCATTTTCAGCTCAAAAAATGTCAAAACGAGGTCAATCATCGTCAATGTCTTACAAAGACAAAGTAAGTCGGATTTCTTTCTAAAATACTCTTTCTTAAAAATGTATTTCCAGGCAAATCTTCACTTTGTCGAGCAAGAAGAGCCGGCATTTATTAAGGCGATAAAGGCAAAGATGGGATATAAGGAGCCGGCGAAATTGGAAGACAAAGTGGGTATTTTAACAGAAATGATTGATTTATTCTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>272 268 159 83 69 65 58 26</canonical_bands>
                <polymorphic_bands>355 268 159 69 65 58 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAGATATATCATGTGAGAGAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTCCCCTATTTTTCAAGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAGATATATCATGTGAGAGAAGAAACGAAAACAAAAATTTTGGAAAAACAAAGAAACGACAAACATCTTTCAAAAGAATAGGAGGGAATTGTTATGCGAAATAAATAATATTTTTTAATTATTTTTCGAAGATTGGATGGAAAATGAGAGAAAAAAGAATCGATGGACAAGCACTCTTAGCGAAAAAAAAGAATCTTTTAAAGTTGAAAATCGATGAAAATTCGGTAGGAAACTTGAAAAATAGGGGAA</canonical_amplicon>
		<polymorphic_amplicon>CCAGATATATCATGTGAGAGAAGAAACGAAAACAAAAATTTTGGAAAAACAAAGAAACGACAAACATCTTTCAAAAGAATAGGAGGGAATTGTTATGCGAAATAAATAATATTTTKTAATTATTTTTCGAAGATTGGATGGAAAATGAGAGAAAAAAGAATCGATGGACAAGCACTCTTAGCGAAAAAAAAGAATCTTTTAAAGTTGAAAATCGATGAAAATTCGGTAGGAAACTTGAAAAATAGGGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4683</snp_id>
        <super_contig>c002500822.Contig1</super_contig>
        <contig_pos>80701</contig_pos>
        <strand>+</strand>
        <context>ACATCTTTCA[A/G]AAGAATAGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACGAAAACAAAAATTTTGGAAAAACAAAGAAACGACAAACATCTTTCA</left_flank>
        <right_flank>AAGAATAGGAGGGAATTGTTATGCGAAATAAATAATATTTTTTAATTATT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCTTAATATTCTGAAACTAACCGAAATTCTGAAAATTTTTGAAATATTGAAACACAAGAATCCCATGAATCCGAAAAATACTGAATTCCAGAAAATTCCAAAAATCCTTTAAAATTTTCAAAAGTCCTAGAACACCTGGAAAACCCAAAAATTCTAAAAATTCAAGTAATCCGAAAAATCTTCAAAATTCCAAAAACCCTTCTAATTTCCACAAATTCCGAAAATCCCAAGAATTCTGAGAAATTTCACAAAAATCCCGGAAATCTTTTAAAAATTCTTCAAAATGTCTAAAATCACAAAAGAATCTAAAAATTTGAAAAAAAACTCTTTTCATTTTTTTATCAAATTTTTGGCATTTTTCAAACTAATACAAACAAAACAAATGAAAGGAATAGGCGACAAGGGGCTCCCGAGGAATTAGGAGCCAGATATATCATGTGAGAGAAGAAACGAAAACAAAAATTTTGGAAAAACAAAGAAACGACAAACATCTTTCAAAAGAATAGGAGGGAATTGTTATGCGAAATAAATAATATTTTTTAATTATTTTTCGAAGATTGGATGGAAAATGAGAGAAAAAAGAATCGATGGACAAGCACTCTTAGCGAAAAAAAAGAATCTTTTAAAGTTGAAAATCGATGAAAATTCGGTAGGAAACTTGAAAAATAGGGGAAAAAAACTGTTTTTGAACCGGCGCTAAAAGGAAAACCCAACACTTTACGACACTTTGCGGACAACACAACTTTTCGGCTTGCACTTTTCGGCTTGTACTATTTTTTTTTGAACCTTTTTTAGGCATTTTCAGCTCAAAAAATGTCAAAACGAGGTCAATCATCGTCAATGTCTTACAAAGACAAAGTAAGTCGGATTTCTTTCTAAAATACTCTTTCTTAAAAATGTATTTCCAGGCAAATCTTCACTTTGTCGAGCAAGAAGAGCCGGCATTTATTAAGGCGATAAAGGCAAAGATGGGATATAAGGAGCCGGCGAAATTGGAA</canonical>
            <polymorphic>TATCTTAATATTCTGAAACTAACCGAAATTCTGAAAATTTTTGAAATATTGAAACACAAGAATCCCATGAATCCGAAAAATACTGAATTCCAGAAAATTCCAAAAATCCTTTAAAATTTTCAAAAGTCCTAGAACACCTGGAAAACCCAAAAATTCTAAAAATTCAAGTAATCCGAAAAATCTTCAAAATTCCAAAAACCCTTCTAATTTCCACAAATTCCGAAAATCCCAAGAATTCTGAGAAATTTCACAAAAATCCCGGAAATCTTTTAAAAATTCTTCAAAATGTCTAAAATCACAAAAGAATCTAAAAATTTGAAAAAAAACTCTTTTCATTTTTTTATCAAATTTTTGGCATTTTTCAAACTAATACAAACAAAACAAATGAAAGGAATAGGCGACAAGGGGCTCCCGAGGAATTAGGAGCCAGATATATCATGTGAGAGAAGAAACGAAAACAAAAATTTTGGAAAAACAAAGAAACGACAAACATCTTTCARAAGAATAGGAGGGAATTGTTATGCGAAATAAATAATATTTTTTAATTATTTTTCGAAGATTGGATGGAAAATGAGAGAAAAAAGAATCGATGGACAAGCACTCTTAGCGAAAAAAAAGAATCTTTTAAAGTTGAAAATCGATGAAAATTCGGTAGGAAACTTGAAAAATAGGGGAAAAAAACTGTTTTTGAACCGGCGCTAAAAGGAAAACCCAACACTTTACGACACTTTGCGGACAACACAACTTTTCGGCTTGCACTTTTCGGCTTGTACTATTTTTTTTTGAACCTTTTTTAGGCATTTTCAGCTCAAAAAATGTCAAAACGAGGTCAATCATCGTCAATGTCTTACAAAGACAAAGTAAGTCGGATTTCTTTCTAAAATACTCTTTCTTAAAAATGTATTTCCAGGCAAATCTTCACTTTGTCGAGCAAGAAGAGCCGGCATTTATTAAGGCGATAAAGGCAAAGATGGGATATAAGGAGCCGGCGAAATTGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGATATATCATGTGAGAGAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTCCCCTATTTTTCAAGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAGATATATCATGTGAGAGAAGAAACGAAAACAAAAATTTTGGAAAAACAAAGAAACGACAAACATCTTTCAAAAGAATAGGAGGGAATTGTTATGCGAAATAAATAATATTTTTTAATTATTTTTCGAAGATTGGATGGAAAATGAGAGAAAAAAGAATCGATGGACAAGCACTCTTAGCGAAAAAAAAGAATCTTTTAAAGTTGAAAATCGATGAAAATTCGGTAGGAAACTTGAAAAATAGGGGAA</canonical_amplicon>
		<polymorphic_amplicon>CCAGATATATCATGTGAGAGAAGAAACGAAAACAAAAATTTTGGAAAAACAAAGAAACGACAAACATCTTTCARAAGAATAGGAGGGAATTGTTATGCGAAATAAATAATATTTTTTAATTATTTTTCGAAGATTGGATGGAAAATGAGAGAAAAAAGAATCGATGGACAAGCACTCTTAGCGAAAAAAAAGAATCTTTTAAAGTTGAAAATCGATGAAAATTCGGTAGGAAACTTGAAAAATAGGGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4684</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>7298</contig_pos>
        <strand>+</strand>
        <context>ATTGAGCTCA[A/C]AGTGAAGTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATCTTGTTAGTTGAAATATTTTTGATCAAAATTGAGATAATTGAGCTCA</left_flank>
        <right_flank>AGTGAAGTATAGAGTGGGCTTCTATTATTAGAGCAGTTATGGTAAGTAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACAATGGAAATTACGGTTTGTGACAGTAGAAACGACAAAACGATAACAAAAGTAAATTCAGGAAAATAATATGAAGAATAGAAAACAAATAATAGAATTGATAGGAGAAGAAACGATGATGTTCTGTAATAACTAAGTGAATGGGTAAAACAACTGTCTCTAGAGCGCATCTTCACCCCAAACCAGGTAGAGTAGATTCAATAGGTTGGAAATAGTTAGTGGGAAAAAACGACCGGGTACGAGGAGACGTTATATGTTTATTGATAGACAAGGTGAAGGAGAGCTATTTATCTAATTATGGGAATGGGGAAAAAAAGGAATAGTGAATGAAGTTACGACTGGGTACCGTATACACTCTAATAAAAGGTCCGCTCATACTTGTACTTCAAGATTTTCAGAAAAGATAACAAAAAAACTGCCAACATTATTTTTCATAATATCACCAACATCTTGTTAGTTGAAATATTTTTGATCAAAATTGAGATAATTGAGCTCACAGTGAAGTATAGAGTGGGCTTCTATTATTAGAGCAGTTATGGTAAGTAATTTAGGGTTCATTAGAAGAGACCAAAAATAATAAATACTCTAGTAATGTAATTTTCGTAAACGAATAAAGATTTTGAGATATTCATATTTCGTACTTTTGAGAATTGGAGACTGCCAAGATATTAGATTTCTAATTTTAAAGATTCTCACTAATACTCTTGTCCGGCACCAATGAACCGTGTGGTTGAAAATTTATTTTAAAAACACATCTTTGGTCCTGAAGCGAAAACAGTGACGGTTCTTACAATTTTATGCGCCTTTTCTCTGTATTTCGAAATTTATTTATAGGCTAAAAAAACAATTTCAAAATACTGAACAAAAGACGAATGAATTTATCTGTAAAAGCCGTAGCTGCGTTTGCTTCAGGACCGACAATGCGCCTTTAAATGAGTATTTAACTATAACGTTCATCGACGTCGGAAAAGAATAATTACAGAATCGAATTCAGGAT</canonical>
            <polymorphic>AAAACAATGGAAATTACGGTTTGTGACAGTAGAAACGACAAAACGATAACAAAAGTAAATTCAGGAAAATAATATGAAGAATAGAAAACAAATAATAGAATTGATAGGAGAAGAAACGATGATGTTCTGTAATAACTAAGTGAATGGGTAAAACAACTGTCTCTAGAGCGCATCTTCACCCCAAACCAGGTAGAGTAGATTCAATAGGTTGGAAATAGTTAGTGGGAAAAAACGACCGGGTACGAGGAGACGTTATATGTTTATTGATAGACAAGGTGAAGGAGAGCTATTTATCTAATTATGGGAATGGGGAAAAAAAGGAATAGTGAATGAAGTTACGACTGGGTACCGTATACACTCTAATAAAAGGTCCGCTCATACTTGTACTTCAAGATTTTCAGAAAAGATAACAAAAAAACTGCCAACATTATTTTTCATAATATCACCAACATCTTGTTAGTTGAAATATTTTTGATCAAAATTGAGATAATTGAGCTCAMAGTGAAGTATAGAGTGGGCTTCTATTATTAGAGCAGTTATGGTAAGTAATTTAGGGTTCATTAGAAGAGACCAAAAATAATAAATACTCTAGTAATGTAATTTTCGTAAACGAATAAAGATTTTGAGATATTCATATTTCGTACTTTTGAGAATTGGAGACTGCCAAGATATTAGATTTCTAATTTTAAAGATTCTCACTAATACTCTTGTCCGGCACCAATGAACCGTGTGGTTGAAAATTTATTTTAAAAACACATCTTTGGTCCTGAAGCGAAAACAGTGACGGTTCTTACAATTTTATGCGCCTTTTCTCTGTATTTCGAAATTTATTTATAGGCTAAAAAAACAATTTCAAAATACTGAACAAAAGACGAATGAATTTATCTGTAAAAGCCGTAGCTGCGTTTGCTTCAGGACCGACAATGCGCCTTTAAATGAGTATTTAACTATAACGTTCATCGACGTCGGAAAAGAATAATTACAGAATCGAATTCAGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>226 214 192 151 130 53 18 10 6</canonical_bands>
                <polymorphic_bands>377 214 192 130 53 18 10 6</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>217 182 117 88 54 54 50 46 36 29 28 25 23 19 13 12 5 2</canonical_bands>
                <polymorphic_bands>217 182 117 88 59 54 50 46 36 29 28 25 23 19 13 12 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAGTGAATGAAGTTACGACTGG</pcr_primer_p1>
		<pcr_primer_p2>GGTCTCTTCTAATGAACCCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAGTGAATGAAGTTACGACTGGGTACCGTATACACTCTAATAAAAGGTCCGCTCATACTTGTACTTCAAGATTTTCAGAAAAGATAACAAAAAAACTGCCAACATTATTTTTCATAATATCACCAACATCTTGTTAGTTGAAATATTTTTGATCAAAATTGAGATAATTGAGCTCACAGTGAAGTATAGAGTGGGCTTCTATTATTAGAGCAGTTATGGTAAGTAATTTAGGGTTCATTAGAAGAGACC</canonical_amplicon>
		<polymorphic_amplicon>ATAGTGAATGAAGTTACGACTGGGTACCGTATACACTCTAATAAAAGGTCCGCTCATACTTGTACTTCAAGATTTTCAGAAAAGATAACAAAAAAACTGCCAACATTATTTTTCATAATATCACCAACATCTTGTTAGTTGAAATATTTTTGATCAAAATTGAGATAATTGAGCTCAMAGTGAAGTATAGAGTGGGCTTCTATTATTAGAGCAGTTATGGTAAGTAATTTAGGGTTCATTAGAAGAGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4685</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>7455</contig_pos>
        <strand>+</strand>
        <context>TTGAGAATTG[A/G]AGACTGCCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAACGAATAAAGATTTTGAGATATTCATATTTCGTACTTTTGAGAATTG</left_flank>
        <right_flank>AGACTGCCAAGATATTAGATTTCTAATTTTAAAGATTCTCACTAATACTC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCTCTAGAGCGCATCTTCACCCCAAACCAGGTAGAGTAGATTCAATAGGTTGGAAATAGTTAGTGGGAAAAAACGACCGGGTACGAGGAGACGTTATATGTTTATTGATAGACAAGGTGAAGGAGAGCTATTTATCTAATTATGGGAATGGGGAAAAAAAGGAATAGTGAATGAAGTTACGACTGGGTACCGTATACACTCTAATAAAAGGTCCGCTCATACTTGTACTTCAAGATTTTCAGAAAAGATAACAAAAAAACTGCCAACATTATTTTTCATAATATCACCAACATCTTGTTAGTTGAAATATTTTTGATCAAAATTGAGATAATTGAGCTCACAGTGAAGTATAGAGTGGGCTTCTATTATTAGAGCAGTTATGGTAAGTAATTTAGGGTTCATTAGAAGAGACCAAAAATAATAAATACTCTAGTAATGTAATTTTCGTAAACGAATAAAGATTTTGAGATATTCATATTTCGTACTTTTGAGAATTGGAGACTGCCAAGATATTAGATTTCTAATTTTAAAGATTCTCACTAATACTCTTGTCCGGCACCAATGAACCGTGTGGTTGAAAATTTATTTTAAAAACACATCTTTGGTCCTGAAGCGAAAACAGTGACGGTTCTTACAATTTTATGCGCCTTTTCTCTGTATTTCGAAATTTATTTATAGGCTAAAAAAACAATTTCAAAATACTGAACAAAAGACGAATGAATTTATCTGTAAAAGCCGTAGCTGCGTTTGCTTCAGGACCGACAATGCGCCTTTAAATGAGTATTTAACTATAACGTTCATCGACGTCGGAAAAGAATAATTACAGAATCGAATTCAGGATTTAAAGCAAATCAGTCAAAACATAAGTAAAGGGAACAGTAAAATGGTGGAAGGAAAGATGAGCTCATTTCAACATAACTGAGTAAATGAATAATACAACTGTCTCTAGGGCGTGTCTTTACCCCAAACCAGGTGGGATTGGATCACATCAATCTATG</canonical>
            <polymorphic>TGTCTCTAGAGCGCATCTTCACCCCAAACCAGGTAGAGTAGATTCAATAGGTTGGAAATAGTTAGTGGGAAAAAACGACCGGGTACGAGGAGACGTTATATGTTTATTGATAGACAAGGTGAAGGAGAGCTATTTATCTAATTATGGGAATGGGGAAAAAAAGGAATAGTGAATGAAGTTACGACTGGGTACCGTATACACTCTAATAAAAGGTCCGCTCATACTTGTACTTCAAGATTTTCAGAAAAGATAACAAAAAAACTGCCAACATTATTTTTCATAATATCACCAACATCTTGTTAGTTGAAATATTTTTGATCAAAATTGAGATAATTGAGCTCACAGTGAAGTATAGAGTGGGCTTCTATTATTAGAGCAGTTATGGTAAGTAATTTAGGGTTCATTAGAAGAGACCAAAAATAATAAATACTCTAGTAATGTAATTTTCGTAAACGAATAAAGATTTTGAGATATTCATATTTCGTACTTTTGAGAATTGRAGACTGCCAAGATATTAGATTTCTAATTTTAAAGATTCTCACTAATACTCTTGTCCGGCACCAATGAACCGTGTGGTTGAAAATTTATTTTAAAAACACATCTTTGGTCCTGAAGCGAAAACAGTGACGGTTCTTACAATTTTATGCGCCTTTTCTCTGTATTTCGAAATTTATTTATAGGCTAAAAAAACAATTTCAAAATACTGAACAAAAGACGAATGAATTTATCTGTAAAAGCCGTAGCTGCGTTTGCTTCAGGACCGACAATGCGCCTTTAAATGAGTATTTAACTATAACGTTCATCGACGTCGGAAAAGAATAATTACAGAATCGAATTCAGGATTTAAAGCAAATCAGTCAAAACATAAGTAAAGGGAACAGTAAAATGGTGGAAGGAAAGATGAGCTCATTTCAACATAACTGAGTAAATGAATAATACAACTGTCTCTAGGGCGTGTCTTTACCCCAAACCAGGTGGGATTGGATCACATCAATCTATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGTAAACGAATAAAGATTTTG</pcr_primer_p1>
		<pcr_primer_p2>TGATTTGCTTTAAATCCTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>411</pcr_amplicon_size>
		<canonical_amplicon>TTCGTAAACGAATAAAGATTTTGAGATATTCATATTTCGTACTTTTGAGAATTGGAGACTGCCAAGATATTAGATTTCTAATTTTAAAGATTCTCACTAATACTCTTGTCCGGCACCAATGAACCGTGTGGTTGAAAATTTATTTTAAAAACACATCTTTGGTCCTGAAGCGAAAACAGTGACGGTTCTTACAATTTTATGCGCCTTTTCTCTGTATTTCGAAATTTATTTATAGGCTAAAAAAACAATTTCAAAATACTGAACAAAAGACGAATGAATTTATCTGTAAAAGCCGTAGCTGCGTTTGCTTCAGGACCGACAATGCGCCTTTAAATGAGTATTTAACTATAACGTTCATCGACGTCGGAAAAGAATAATTACAGAATCGAATTCAGGATTTAAAGCAAATCA</canonical_amplicon>
		<polymorphic_amplicon>TTCGTAAACGAATAAAGATTTTGAGATATTCATATTTCGTACTTTTGAGAATTGRAGACTGCCAAGATATTAGATTTCTAATTTTAAAGATTCTCACTAATACTCTTGTCCGGCACCAATGAACCGTGTGGTTGAAAATTTATTTTAAAAACACATCTTTGGTCCTGAAGCGAAAACAGTGACGGTTCTTACAATTTTATGCGCCTTTTCTCTGTATTTCGAAATTTATTTATAGGCTAAAAAAACAATTTCAAAATACTGAACAAAAGACGAATGAATTTATCTGTAAAAGCCGTAGCTGCGTTTGCTTCAGGACCGACAATGCGCCTTTAAATGAGTATTTAACTATAACGTTCATCGACGTCGGAAAAGAATAATTACAGAATCGAATTCAGGATTTAAAGCAAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4688</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>10667</contig_pos>
        <strand></strand>
        <context>GGGAAaaata[A/G]atttttggac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTTCGAGAAAATCTGTAGGATTCTTTTAAGAAAATTCGGGAAAAATA</left_flank>
        <right_flank>ATTTTTGGACGCTTTTGAAAAACGTTTAGAAAGCAACAACCACCCATAGG</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCATTTTTCACGCTCTCATTTTCCTTTTGAAAAAAAATTCAGTTTATTTTTAGAGAGGAATTGATTTTCCGAAAAAAATTTCATGAATGTATCCTTTCTCTTTTTTATTCTTTCTTCATGCAACCTTGAAATATGATTGCAATAATTTAAAAAAAAATTCAGTTAAATATGTCTGGTGATCCTTCAATCTCCGAATCTGACAAATCCGATCGAAATCTCAGCAATGAGGAGTCTGAAAAATGCACCGATGGTCTTCAATCAGAATTACAAAAAGACGTAGAACTGAAAATTCTTCGCAACGCCTTCACAAGCAAAACACAAACTATATCCCAACTGGAAGAGCAATTTATCGAACTCAATAGAATGGACGAACGTCAGAAGATGCAAATCGCTTCGCAGAAGAAACAAATTGCAGTTCTGACAATAACTAGGCAGGTTTGTAGCCATTTATTTTTCGAGAAAATCTGTAGGATTCTTTTAAGAAAATTCGGGAAAAATAAATTTTTGGACGCTTTTGAAAAACGTTTAGAAAGCAACAACCACCCATAGGTCGAGAAAAACGGGAAAAAATTAATTGAAAACCTAATGTCCCGTTTTCTTCCAAACTCTTCAAGAATTGCTGAATAATGATTTTGGAAACAATATTCGGAAACGAAAATTTCCAAAAAAAAATTTGGGGAAAATTTTCGGGAACAACAATTCCAGAACACTTTTCTTGAACAAGTATTTCCATAATGCAAATTAAAATCTTTCAGACACAATACACTGAAAGTCAACTTCTGGTGGACGAGCTCAATAAAAAAATCAAGGAGAAAAATTGCCTGATCAATAATATTATTAACAAAAAAAAGAAGGACCTCGAGAAACTGGAAGAAAAACACCAAATTGAGTTGAAAAATGCAGAAATGAAGCACAGAGCAGAGTTATGGCAATACCGACAAAATGTTAGAAACAAGAAAATGAAAGACTCTTTTATGCAAACGGAGGACTCTGACGACGA</canonical>
            <polymorphic>GCATTTTTCACGCTCTCATTTTCCTTTTGAAAAAAAATTCAGTTTATTTTTAGAGAGGAATTGATTTTCCGAAAAAAATTTCATGAATGTATCCTTTCTCTTTTTTATTCTTTCTTCATGCAACCTTGAAATATGATTGCAATAATTTAAAAAAAAATTCAGTTAAATATGTCTGGTGATCCTTCAATCTCCGAATCTGACAAATCCGATCGAAATCTCAGCAATGAGGAGTCTGAAAAATGCACCGATGGTCTTCAATCAGAATTACAAAAAGACGTAGAACTGAAAATTCTTCGCAACGCCTTCACAAGCAAAACACAAACTATATCCCAACTGGAAGAGCAATTTATCGAACTCAATAGAATGGACGAACGTCAGAAGATGCAAATCGCTTCGCAGAAGAAACAAATTGCAGTTCTGACAATAACTAGGCAGGTTTGTAGCCATTTATTTTTCGAGAAAATCTGTAGGATTCTTTTAAGAAAATTCGGGAAAAATARATTTTTGGACGCTTTTGAAAAACGTTTAGAAAGCAACAACCACCCATAGGTCGAGAAAAACGGGAAAAAATTAATTGAAAACCTAATGTCCCGTTTTCTTCCAAACTCTTCAAGAATTGCTGAATAATGATTTTGGAAACAATATTCGGAAACGAAAATTTCCAAAAAAAAATTTGGGGAAAATTTTCGGGAACAACAATTCCAGAACACTTTTCTTGAACAAGTATTTCCATAATGCAAATTAAAATCTTTCAGACACAATACACTGAAAGTCAACTTCTGGTGGACGAGCTCAATAAAAAAATCAAGGAGAAAAATTGCCTGATCAATAATATTATTAACAAAAAAAAGAAGGACCTCGAGAAACTGGAAGAAAAACACCAAATTGAGTTGAAAAATGCAGAAATGAAGCACAGAGCAGAGTTATGGCAATACCGACAAAATGTTAGAAACAAGAAAATGAAAGACTCTTTTATGCAAACGGAGGACTCTGACGACGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>319 197 157 132 79 41 35 15 14 11</canonical_bands>
                <polymorphic_bands>319 197 172 132 79 41 35 14 11</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>117 107 77 76 69 68 67 64 56 42 42 42 35 25 23 18 16 15 14 12 11 4</canonical_bands>
                <polymorphic_bands>117 107 84 77 76 68 67 64 56 42 42 42 35 25 23 18 16 14 12 11 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGTTTGTAGCCATTTATTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TCTGAAAGATTTTAATTTGCATTAT</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>AGGTTTGTAGCCATTTATTTTTCGAGAAAATCTGTAGGATTCTTTTAAGAAAATTCGGGAAAAATAAATTTTTGGACGCTTTTGAAAAACGTTTAGAAAGCAACAACCACCCATAGGTCGAGAAAAACGGGAAAAAATTAATTGAAAACCTAATGTCCCGTTTTCTTCCAAACTCTTCAAGAATTGCTGAATAATGATTTTGGAAACAATATTCGGAAACGAAAATTTCCAAAAAAAAATTTGGGGAAAATTTTCGGGAACAACAATTCCAGAACACTTTTCTTGAACAAGTATTTCCATAATGCAAATTAAAATCTTTCAGA</canonical_amplicon>
		<polymorphic_amplicon>AGGTTTGTAGCCATTTATTTTTCGAGAAAATCTGTAGGATTCTTTTAAGAAAATTCGGGAAAAATARATTTTTGGACGCTTTTGAAAAACGTTTAGAAAGCAACAACCACCCATAGGTCGAGAAAAACGGGAAAAAATTAATTGAAAACCTAATGTCCCGTTTTCTTCCAAACTCTTCAAGAATTGCTGAATAATGATTTTGGAAACAATATTCGGAAACGAAAATTTCCAAAAAAAAATTTGGGGAAAATTTTCGGGAACAACAATTCCAGAACACTTTTCTTGAACAAGTATTTCCATAATGCAAATTAAAATCTTTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4689</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>10563</contig_pos>
        <strand>+</strand>
        <context>AAATCGCTTC[A/G]CAGAAGAAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTATCGAACTCAATAGAATGGACGAACGTCAGAAGATGCAAATCGCTTC</left_flank>
        <right_flank>CAGAAGAAACAAATTGCAGTTCTGACAATAACTAGGCAGGTTTGTAGCCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGAAACTACATTTTTTGATACAAATGGCACGCTTGGACAGAGCAAGAATCCCATGGATTTTGAGAATATTTGGATCAAAAGTCATTTTCTCATTCTGATCAGTGCATTTTTCACGCTCTCATTTTCCTTTTGAAAAAAAATTCAGTTTATTTTTAGAGAGGAATTGATTTTCCGAAAAAAATTTCATGAATGTATCCTTTCTCTTTTTTATTCTTTCTTCATGCAACCTTGAAATATGATTGCAATAATTTAAAAAAAAATTCAGTTAAATATGTCTGGTGATCCTTCAATCTCCGAATCTGACAAATCCGATCGAAATCTCAGCAATGAGGAGTCTGAAAAATGCACCGATGGTCTTCAATCAGAATTACAAAAAGACGTAGAACTGAAAATTCTTCGCAACGCCTTCACAAGCAAAACACAAACTATATCCCAACTGGAAGAGCAATTTATCGAACTCAATAGAATGGACGAACGTCAGAAGATGCAAATCGCTTCGCAGAAGAAACAAATTGCAGTTCTGACAATAACTAGGCAGGTTTGTAGCCATTTATTTTTCGAGAAAATCTGTAGGATTCTTTTAAGAAAATTCGGGAAAAATAAATTTTTGGACGCTTTTGAAAAACGTTTAGAAAGCAACAACCACCCATAGGTCGAGAAAAACGGGAAAAAATTAATTGAAAACCTAATGTCCCGTTTTCTTCCAAACTCTTCAAGAATTGCTGAATAATGATTTTGGAAACAATATTCGGAAACGAAAATTTCCAAAAAAAAATTTGGGGAAAATTTTCGGGAACAACAATTCCAGAACACTTTTCTTGAACAAGTATTTCCATAATGCAAATTAAAATCTTTCAGACACAATACACTGAAAGTCAACTTCTGGTGGACGAGCTCAATAAAAAAATCAAGGAGAAAAATTGCCTGATCAATAATATTATTAACAAAAAAAAGAAGGACCTCGAGAAACTGGAAGAAAAACACCAAATTGAGTTGAAA</canonical>
            <polymorphic>TCGAAACTACATTTTTTGATACAAATGGCACGCTTGGACAGAGCAAGAATCCCATGGATTTTGAGAATATTTGGATCAAAAGTCATTTTCTCATTCTGATCAGTGCATTTTTCACGCTCTCATTTTCCTTTTGAAAAAAAATTCAGTTTATTTTTAGAGAGGAATTGATTTTCCGAAAAAAATTTCATGAATGTATCCTTTCTCTTTTTTATTCTTTCTTCATGCAACCTTGAAATATGATTGCAATAATTTAAAAAAAAATTCAGTTAAATATGTCTGGTGATCCTTCAATCTCCGAATCTGACAAATCCGATCGAAATCTCAGCAATGAGGAGTCTGAAAAATGCACCGATGGTCTTCAATCAGAATTACAAAAAGACGTAGAACTGAAAATTCTTCGCAACGCCTTCACAAGCAAAACACAAACTATATCCCAACTGGAAGAGCAATTTATCGAACTCAATAGAATGGACGAACGTCAGAAGATGCAAATCGCTTCRCAGAAGAAACAAATTGCAGTTCTGACAATAACTAGGCAGGTTTGTAGCCATTTATTTTTCGAGAAAATCTGTAGGATTCTTTTAAGAAAATTCGGGAAAAATAAATTTTTGGACGCTTTTGAAAAACGTTTAGAAAGCAACAACCACCCATAGGTCGAGAAAAACGGGAAAAAATTAATTGAAAACCTAATGTCCCGTTTTCTTCCAAACTCTTCAAGAATTGCTGAATAATGATTTTGGAAACAATATTCGGAAACGAAAATTTCCAAAAAAAAATTTGGGGAAAATTTTCGGGAACAACAATTCCAGAACACTTTTCTTGAACAAGTATTTCCATAATGCAAATTAAAATCTTTCAGACACAATACACTGAAAGTCAACTTCTGGTGGACGAGCTCAATAAAAAAATCAAGGAGAAAAATTGCCTGATCAATAATATTATTAACAAAAAAAAGAAGGACCTCGAGAAACTGGAAGAAAAACACCAAATTGAGTTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGGTCTTCAATCAGAATTACAA</pcr_primer_p1>
		<pcr_primer_p2>CGAATTTTCTTAAAAGAATCCTAC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATGGTCTTCAATCAGAATTACAAAAAGACGTAGAACTGAAAATTCTTCGCAACGCCTTCACAAGCAAAACACAAACTATATCCCAACTGGAAGAGCAATTTATCGAACTCAATAGAATGGACGAACGTCAGAAGATGCAAATCGCTTCGCAGAAGAAACAAATTGCAGTTCTGACAATAACTAGGCAGGTTTGTAGCCATTTATTTTTCGAGAAAATCTGTAGGATTCTTTTAAGAAAATTCG</canonical_amplicon>
		<polymorphic_amplicon>ATGGTCTTCAATCAGAATTACAAAAAGACGTAGAACTGAAAATTCTTCGCAACGCCTTCACAAGCAAAACACAAACTATATCCCAACTGGAAGAGCAATTTATCGAACTCAATAGAATGGACGAACGTCAGAAGATGCAAATCGCTTCRCAGAAGAAACAAATTGCAGTTCTGACAATAACTAGGCAGGTTTGTAGCCATTTATTTTTCGAGAAAATCTGTAGGATTCTTTTAAGAAAATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4690</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>10440</contig_pos>
        <strand>+</strand>
        <context>AATTACAAAA[A/G]GACGTAGAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGAGGAGTCTGAAAAATGCACCGATGGTCTTCAATCAGAATTACAAAA</left_flank>
        <right_flank>GACGTAGAACTGAAAATTCTTCGCAACGCCTTCACAAGCAAAACACAAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGACACGGCCCGTAGCAAGTATGAAGAGAATCATATTCCAAGAAAGGAATTATCCTTTAATTTTCACGTTTTTCTGATTTTCCTTTTGAAAGAAGACAAATTGTTGTTTGTTGTTCTTTATCTCGAAACTACATTTTTTGATACAAATGGCACGCTTGGACAGAGCAAGAATCCCATGGATTTTGAGAATATTTGGATCAAAAGTCATTTTCTCATTCTGATCAGTGCATTTTTCACGCTCTCATTTTCCTTTTGAAAAAAAATTCAGTTTATTTTTAGAGAGGAATTGATTTTCCGAAAAAAATTTCATGAATGTATCCTTTCTCTTTTTTATTCTTTCTTCATGCAACCTTGAAATATGATTGCAATAATTTAAAAAAAAATTCAGTTAAATATGTCTGGTGATCCTTCAATCTCCGAATCTGACAAATCCGATCGAAATCTCAGCAATGAGGAGTCTGAAAAATGCACCGATGGTCTTCAATCAGAATTACAAAAAGACGTAGAACTGAAAATTCTTCGCAACGCCTTCACAAGCAAAACACAAACTATATCCCAACTGGAAGAGCAATTTATCGAACTCAATAGAATGGACGAACGTCAGAAGATGCAAATCGCTTCGCAGAAGAAACAAATTGCAGTTCTGACAATAACTAGGCAGGTTTGTAGCCATTTATTTTTCGAGAAAATCTGTAGGATTCTTTTAAGAAAATTCGGGAAAAATAAATTTTTGGACGCTTTTGAAAAACGTTTAGAAAGCAACAACCACCCATAGGTCGAGAAAAACGGGAAAAAATTAATTGAAAACCTAATGTCCCGTTTTCTTCCAAACTCTTCAAGAATTGCTGAATAATGATTTTGGAAACAATATTCGGAAACGAAAATTTCCAAAAAAAAATTTGGGGAAAATTTTCGGGAACAACAATTCCAGAACACTTTTCTTGAACAAGTATTTCCATAATGCAAATTAAAATCTTTCAGACACAATACACTGAAAGT</canonical>
            <polymorphic>AAGACACGGCCCGTAGCAAGTATGAAGAGAATCATATTCCAAGAAAGGAATTATCCTTTAATTTTCACGTTTTTCTGATTTTCCTTTTGAAAGAAGACAAATTGTTGTTTGTTGTTCTTTATCTCGAAACTACATTTTTTGATACAAATGGCACGCTTGGACAGAGCAAGAATCCCATGGATTTTGAGAATATTTGGATCAAAAGTCATTTTCTCATTCTGATCAGTGCATTTTTCACGCTCTCATTTTCCTTTTGAAAAAAAATTCAGTTTATTTTTAGAGAGGAATTGATTTTCCGAAAAAAATTTCATGAATGTATCCTTTCTCTTTTTTATTCTTTCTTCATGCAACCTTGAAATATGATTGCAATAATTTAAAAAAAAATTCAGTTAAATATGTCTGGTGATCCTTCAATCTCCGAATCTGACAAATCCGATCGAAATCTCAGCAATGAGGAGTCTGAAAAATGCACCGATGGTCTTCAATCAGAATTACAAAARGACGTAGAACTGAAAATTCTTCGCAACGCCTTCACAAGCAAAACACAAACTATATCCCAACTGGAAGAGCAATTTATCGAACTCAATAGAATGGACGAACGTCAGAAGATGCAAATCGCTTCGCAGAAGAAACAAATTGCAGTTCTGACAATAACTAGGCAGGTTTGTAGCCATTTATTTTTCGAGAAAATCTGTAGGATTCTTTTAAGAAAATTCGGGAAAAATAAATTTTTGGACGCTTTTGAAAAACGTTTAGAAAGCAACAACCACCCATAGGTCGAGAAAAACGGGAAAAAATTAATTGAAAACCTAATGTCCCGTTTTCTTCCAAACTCTTCAAGAATTGCTGAATAATGATTTTGGAAACAATATTCGGAAACGAAAATTTCCAAAAAAAAATTTGGGGAAAATTTTCGGGAACAACAATTCCAGAACACTTTTCTTGAACAAGTATTTCCATAATGCAAATTAAAATCTTTCAGACACAATACACTGAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTCATGCAACCTTGAAATA</pcr_primer_p1>
		<pcr_primer_p2>TATTGAGTTCGATAAATTGCTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTTCATGCAACCTTGAAATATGATTGCAATAATTTAAAAAAAAATTCAGTTAAATATGTCTGGTGATCCTTCAATCTCCGAATCTGACAAATCCGATCGAAATCTCAGCAATGAGGAGTCTGAAAAATGCACCGATGGTCTTCAATCAGAATTACAAAAAGACGTAGAACTGAAAATTCTTCGCAACGCCTTCACAAGCAAAACACAAACTATATCCCAACTGGAAGAGCAATTTATCGAACTCAATA</canonical_amplicon>
		<polymorphic_amplicon>TCTTCATGCAACCTTGAAATATGATTGCAATAATTTAAAAAAAAATTCAGTTAAATATGTCTGGTGATCCTTCAATCTCCGAATCTGACAAATCCGATCGAAATCTCAGCAATGAGGAGTCTGAAAAATGCACCGATGGTCTTCAATCAGAATTACAAAARGACGTAGAACTGAAAATTCTTCGCAACGCCTTCACAAGCAAAACACAAACTATATCCCAACTGGAAGAGCAATTTATCGAACTCAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4692</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>28805</contig_pos>
        <strand>+</strand>
        <context>AGCACATCTG[C/T]AATAATACAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTTTTGCATGATCTTGCGAATCCAAAGTCGCCAATCTTGAGCACATCTG</left_flank>
        <right_flank>AATAATACATGAGGTTTCAATAACAAAATGATTTTTAAGTTCATTTCTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAACGTGTTCAATCGGAGTCAGTTTTGCACCCTTCAAACTTTTCTTTCCCCGGTTACCATCACTCCTTATTTCTTCAAATCCTTCGAATAAACGAAATATATAAACTTTTCAAAGTGATCGGAAACTTGACCACCGAGCTCCAGACTTCCGAATATGATCAAACAGGTCAAAAATCAACTGAAAATTTTTTCGTATATTTTAACGACCGGTACTGTAAGTACATCGAATCCCAATAAAAAAGTTCTGATCCATTAGTTAGCGGAAAACTTAGCTCTCCACAGCATCCTTCCACGGCTCTTTTTTTGTGATCATATTCACCAACACGATTCCAGCAGCCCAGACGTCTACAGGAGGTCCTCTCCATCTTGCATTTTCCACTAAGATTTCAGGGGCCATGTAACCATGTGTTCCGCGTTTTCTATCCAGCATAATTTCATCTCCGTTGTCAGTTTTGCATGATCTTGCGAATCCAAAGTCGCCAATCTTGAGCACATCTGCAATAATACATGAGGTTTCAATAACAAAATGATTTTTAAGTTCATTTCTTCTATCTTTAGAGAGCATTTTGAAACTAAAACTGGAAAGAACAGATTTCCAGAAATTACAATAAAAATTTTTCTGGAATCAAAGAAATAATAAGATAAACACTTACTGTTTGCTGAGATGAAGAGGTTCTCCGGTTTTATATCGAGATGGATAATATCTTTTGAATGCATGTGTTGGAGTCCGGCGATCAAATGTTTGAAGAACCGGTGATACGGGACTGCGGACGGAGATTCAAAGATTAGGTGGAACAGATCGCCCATCGAAGCGAGCTCCATGAAGAAAACAGTTTGCAGTTCCACATTCTCCATGGCGAAAATTTTTATGACGTGGTCCGCTCCTTCGCTTGCCTTCATGTGTGACGAGAATTCCCGTTCGCTTCGGTGCGCGTCGTGCTTTATTGTTTTCATCGCAATTTGATTCTTCTCGGGATTGTTGTCAACTTTTTCCACCAC</canonical>
            <polymorphic>GCAACGTGTTCAATCGGAGTCAGTTTTGCACCCTTCAAACTTTTCTTTCCCCGGTTACCATCACTCCTTATTTCTTCAAATCCTTCGAATAAACGAAATATATAAACTTTTCAAAGTGATCGGAAACTTGACCACCGAGCTCCAGACTTCCGAATATGATCAAACAGGTCAAAAATCAACTGAAAATTTTTTCGTATATTTTAACGACCGGTACTGTAAGTACATCGAATCCCAATAAAAAAGTTCTGATCCATTAGTTAGCGGAAAACTTAGCTCTCCACAGCATCCTTCCACGGCTCTTTTTTTGTGATCATATTCACCAACACGATTCCAGCAGCCCAGACGTCTACAGGAGGTCCTCTCCATCTTGCATTTTCCACTAAGATTTCAGGGGCCATGTAACCATGTGTTCCGCGTTTTCTATCCAGCATAATTTCATCTCCGTTGTCAGTTTTGCATGATCTTGCGAATCCAAAGTCGCCAATCTTGAGCACATCTGYAATAATACATGAGGTTTCAATAACAAAATGATTTTTAAGTTCATTTCTTCTATCTTTAGAGAGCATTTTGAAACTAAAACTGGAAAGAACAGATTTCCAGAAATTACAATAAAAATTTTTCTGGAATCAAAGAAATAATAAGATAAACACTTACTGTTTGCTGAGATGAAGAGGTTCTCCGGTTTTATATCGAGATGGATAATATCTTTTGAATGCATGTGTTGGAGTCCGGCGATCAAATGTTTGAAGAACCGGTGATACGGGACTGCGGACGGAGATTCAAAGATTAGGTGGAACAGATCGCCCATCGAAGCGAGCTCCATGAAGAAAACAGTTTGCAGTTCCACATTCTCCATGGCGAAAATTTTTATGACGTGGTCCGCTCCTTCGCTTGCCTTCATGTGTGACGAGAATTCCCGTTCGCTTCGGTGCGCGTCGTGCTTTATTGTTTTCATCGCAATTTGATTCTTCTCGGGATTGTTGTCAACTTTTTCCACCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>342 216 162 123 86 43 28</canonical_bands>
                <polymorphic_bands>342 259 162 123 86 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTATCCAGCATAATTTCATCTC</pcr_primer_p1>
		<pcr_primer_p2>CTTCATCTCAGCAAACAGTAAGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCTATCCAGCATAATTTCATCTCCGTTGTCAGTTTTGCATGATCTTGCGAATCCAAAGTCGCCAATCTTGAGCACATCTGCAATAATACATGAGGTTTCAATAACAAAATGATTTTTAAGTTCATTTCTTCTATCTTTAGAGAGCATTTTGAAACTAAAACTGGAAAGAACAGATTTCCAGAAATTACAATAAAAATTTTTCTGGAATCAAAGAAATAATAAGATAAACACTTACTGTTTGCTGAGATGAAG</canonical_amplicon>
		<polymorphic_amplicon>TCTATCCAGCATAATTTCATCTCCGTTGTCAGTTTTGCATGATCTTGCGAATCCAAAGTCGCCAATCTTGAGCACATCTGYAATAATACATGAGGTTTCAATAACAAAATGATTTTTAAGTTCATTTCTTCTATCTTTAGAGAGCATTTTGAAACTAAAACTGGAAAGAACAGATTTCCAGAAATTACAATAAAAATTTTTCTGGAATCAAAGAAATAATAAGATAAACACTTACTGTTTGCTGAGATGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4693</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>28834</contig_pos>
        <strand>+</strand>
        <context>AATAACAAAA[A/T]GATTTTTAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGCCAATCTTGAGCACATCTGCAATAATACATGAGGTTTCAATAACAAAA</left_flank>
        <right_flank>GATTTTTAAGTTCATTTCTTCTATCTTTAGAGAGCATTTTGAAACTAAAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCCTTCAAACTTTTCTTTCCCCGGTTACCATCACTCCTTATTTCTTCAAATCCTTCGAATAAACGAAATATATAAACTTTTCAAAGTGATCGGAAACTTGACCACCGAGCTCCAGACTTCCGAATATGATCAAACAGGTCAAAAATCAACTGAAAATTTTTTCGTATATTTTAACGACCGGTACTGTAAGTACATCGAATCCCAATAAAAAAGTTCTGATCCATTAGTTAGCGGAAAACTTAGCTCTCCACAGCATCCTTCCACGGCTCTTTTTTTGTGATCATATTCACCAACACGATTCCAGCAGCCCAGACGTCTACAGGAGGTCCTCTCCATCTTGCATTTTCCACTAAGATTTCAGGGGCCATGTAACCATGTGTTCCGCGTTTTCTATCCAGCATAATTTCATCTCCGTTGTCAGTTTTGCATGATCTTGCGAATCCAAAGTCGCCAATCTTGAGCACATCTGCAATAATACATGAGGTTTCAATAACAAAATGATTTTTAAGTTCATTTCTTCTATCTTTAGAGAGCATTTTGAAACTAAAACTGGAAAGAACAGATTTCCAGAAATTACAATAAAAATTTTTCTGGAATCAAAGAAATAATAAGATAAACACTTACTGTTTGCTGAGATGAAGAGGTTCTCCGGTTTTATATCGAGATGGATAATATCTTTTGAATGCATGTGTTGGAGTCCGGCGATCAAATGTTTGAAGAACCGGTGATACGGGACTGCGGACGGAGATTCAAAGATTAGGTGGAACAGATCGCCCATCGAAGCGAGCTCCATGAAGAAAACAGTTTGCAGTTCCACATTCTCCATGGCGAAAATTTTTATGACGTGGTCCGCTCCTTCGCTTGCCTTCATGTGTGACGAGAATTCCCGTTCGCTTCGGTGCGCGTCGTGCTTTATTGTTTTCATCGCAATTTGATTCTTCTCGGGATTGTTGTCAACTTTTTCCACCACCGAAACGGAGCCGAAATTTCCCGAAGTCA</canonical>
            <polymorphic>ACCCTTCAAACTTTTCTTTCCCCGGTTACCATCACTCCTTATTTCTTCAAATCCTTCGAATAAACGAAATATATAAACTTTTCAAAGTGATCGGAAACTTGACCACCGAGCTCCAGACTTCCGAATATGATCAAACAGGTCAAAAATCAACTGAAAATTTTTTCGTATATTTTAACGACCGGTACTGTAAGTACATCGAATCCCAATAAAAAAGTTCTGATCCATTAGTTAGCGGAAAACTTAGCTCTCCACAGCATCCTTCCACGGCTCTTTTTTTGTGATCATATTCACCAACACGATTCCAGCAGCCCAGACGTCTACAGGAGGTCCTCTCCATCTTGCATTTTCCACTAAGATTTCAGGGGCCATGTAACCATGTGTTCCGCGTTTTCTATCCAGCATAATTTCATCTCCGTTGTCAGTTTTGCATGATCTTGCGAATCCAAAGTCGCCAATCTTGAGCACATCTGCAATAATACATGAGGTTTCAATAACAAAAWGATTTTTAAGTTCATTTCTTCTATCTTTAGAGAGCATTTTGAAACTAAAACTGGAAAGAACAGATTTCCAGAAATTACAATAAAAATTTTTCTGGAATCAAAGAAATAATAAGATAAACACTTACTGTTTGCTGAGATGAAGAGGTTCTCCGGTTTTATATCGAGATGGATAATATCTTTTGAATGCATGTGTTGGAGTCCGGCGATCAAATGTTTGAAGAACCGGTGATACGGGACTGCGGACGGAGATTCAAAGATTAGGTGGAACAGATCGCCCATCGAAGCGAGCTCCATGAAGAAAACAGTTTGCAGTTCCACATTCTCCATGGCGAAAATTTTTATGACGTGGTCCGCTCCTTCGCTTGCCTTCATGTGTGACGAGAATTCCCGTTCGCTTCGGTGCGCGTCGTGCTTTATTGTTTTCATCGCAATTTGATTCTTCTCGGGATTGTTGTCAACTTTTTCCACCACCGAAACGGAGCCGAAATTTCCCGAAGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATCCAGCATAATTTCATCTC</pcr_primer_p1>
		<pcr_primer_p2>CTTCATCTCAGCAAACAGTAAGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCTATCCAGCATAATTTCATCTCCGTTGTCAGTTTTGCATGATCTTGCGAATCCAAAGTCGCCAATCTTGAGCACATCTGCAATAATACATGAGGTTTCAATAACAAAATGATTTTTAAGTTCATTTCTTCTATCTTTAGAGAGCATTTTGAAACTAAAACTGGAAAGAACAGATTTCCAGAAATTACAATAAAAATTTTTCTGGAATCAAAGAAATAATAAGATAAACACTTACTGTTTGCTGAGATGAAG</canonical_amplicon>
		<polymorphic_amplicon>TCTATCCAGCATAATTTCATCTCCGTTGTCAGTTTTGCATGATCTTGCGAATCCAAAGTCGCCAATCTTGAGCACATCTGCAATAATACATGAGGTTTCAATAACAAAAWGATTTTTAAGTTCATTTCTTCTATCTTTAGAGAGCATTTTGAAACTAAAACTGGAAAGAACAGATTTCCAGAAATTACAATAAAAATTTTTCTGGAATCAAAGAAATAATAAGATAAACACTTACTGTTTGCTGAGATGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4694</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>28887</contig_pos>
        <strand>+</strand>
        <context>AACTAAAACT[G/T]GAAAGAACAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTTAAGTTCATTTCTTCTATCTTTAGAGAGCATTTTGAAACTAAAACT</left_flank>
        <right_flank>GAAAGAACAGATTTCCAGAAATTACAATAAAAATTTTTCTGGAATCAAAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCGAATAAACGAAATATATAAACTTTTCAAAGTGATCGGAAACTTGACCACCGAGCTCCAGACTTCCGAATATGATCAAACAGGTCAAAAATCAACTGAAAATTTTTTCGTATATTTTAACGACCGGTACTGTAAGTACATCGAATCCCAATAAAAAAGTTCTGATCCATTAGTTAGCGGAAAACTTAGCTCTCCACAGCATCCTTCCACGGCTCTTTTTTTGTGATCATATTCACCAACACGATTCCAGCAGCCCAGACGTCTACAGGAGGTCCTCTCCATCTTGCATTTTCCACTAAGATTTCAGGGGCCATGTAACCATGTGTTCCGCGTTTTCTATCCAGCATAATTTCATCTCCGTTGTCAGTTTTGCATGATCTTGCGAATCCAAAGTCGCCAATCTTGAGCACATCTGCAATAATACATGAGGTTTCAATAACAAAATGATTTTTAAGTTCATTTCTTCTATCTTTAGAGAGCATTTTGAAACTAAAACTGGAAAGAACAGATTTCCAGAAATTACAATAAAAATTTTTCTGGAATCAAAGAAATAATAAGATAAACACTTACTGTTTGCTGAGATGAAGAGGTTCTCCGGTTTTATATCGAGATGGATAATATCTTTTGAATGCATGTGTTGGAGTCCGGCGATCAAATGTTTGAAGAACCGGTGATACGGGACTGCGGACGGAGATTCAAAGATTAGGTGGAACAGATCGCCCATCGAAGCGAGCTCCATGAAGAAAACAGTTTGCAGTTCCACATTCTCCATGGCGAAAATTTTTATGACGTGGTCCGCTCCTTCGCTTGCCTTCATGTGTGACGAGAATTCCCGTTCGCTTCGGTGCGCGTCGTGCTTTATTGTTTTCATCGCAATTTGATTCTTCTCGGGATTGTTGTCAACTTTTTCCACCACCGAAACGGAGCCGAAATTTCCCGAAGTCAAGTCTCTGCGCCAGTTATAGCCGAGAAGGGGAGCGAGTTGTTGATTGGAAAGC</canonical>
            <polymorphic>CTTCGAATAAACGAAATATATAAACTTTTCAAAGTGATCGGAAACTTGACCACCGAGCTCCAGACTTCCGAATATGATCAAACAGGTCAAAAATCAACTGAAAATTTTTTCGTATATTTTAACGACCGGTACTGTAAGTACATCGAATCCCAATAAAAAAGTTCTGATCCATTAGTTAGCGGAAAACTTAGCTCTCCACAGCATCCTTCCACGGCTCTTTTTTTGTGATCATATTCACCAACACGATTCCAGCAGCCCAGACGTCTACAGGAGGTCCTCTCCATCTTGCATTTTCCACTAAGATTTCAGGGGCCATGTAACCATGTGTTCCGCGTTTTCTATCCAGCATAATTTCATCTCCGTTGTCAGTTTTGCATGATCTTGCGAATCCAAAGTCGCCAATCTTGAGCACATCTGCAATAATACATGAGGTTTCAATAACAAAATGATTTTTAAGTTCATTTCTTCTATCTTTAGAGAGCATTTTGAAACTAAAACTKGAAAGAACAGATTTCCAGAAATTACAATAAAAATTTTTCTGGAATCAAAGAAATAATAAGATAAACACTTACTGTTTGCTGAGATGAAGAGGTTCTCCGGTTTTATATCGAGATGGATAATATCTTTTGAATGCATGTGTTGGAGTCCGGCGATCAAATGTTTGAAGAACCGGTGATACGGGACTGCGGACGGAGATTCAAAGATTAGGTGGAACAGATCGCCCATCGAAGCGAGCTCCATGAAGAAAACAGTTTGCAGTTCCACATTCTCCATGGCGAAAATTTTTATGACGTGGTCCGCTCCTTCGCTTGCCTTCATGTGTGACGAGAATTCCCGTTCGCTTCGGTGCGCGTCGTGCTTTATTGTTTTCATCGCAATTTGATTCTTCTCGGGATTGTTGTCAACTTTTTCCACCACCGAAACGGAGCCGAAATTTCCCGAAGTCAAGTCTCTGCGCCAGTTATAGCCGAGAAGGGGAGCGAGTTGTTGATTGGAAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATCCAGCATAATTTCATCTC</pcr_primer_p1>
		<pcr_primer_p2>CTTCATCTCAGCAAACAGTAAGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCTATCCAGCATAATTTCATCTCCGTTGTCAGTTTTGCATGATCTTGCGAATCCAAAGTCGCCAATCTTGAGCACATCTGCAATAATACATGAGGTTTCAATAACAAAATGATTTTTAAGTTCATTTCTTCTATCTTTAGAGAGCATTTTGAAACTAAAACTGGAAAGAACAGATTTCCAGAAATTACAATAAAAATTTTTCTGGAATCAAAGAAATAATAAGATAAACACTTACTGTTTGCTGAGATGAAG</canonical_amplicon>
		<polymorphic_amplicon>TCTATCCAGCATAATTTCATCTCCGTTGTCAGTTTTGCATGATCTTGCGAATCCAAAGTCGCCAATCTTGAGCACATCTGCAATAATACATGAGGTTTCAATAACAAAATGATTTTTAAGTTCATTTCTTCTATCTTTAGAGAGCATTTTGAAACTAAAACTKGAAAGAACAGATTTCCAGAAATTACAATAAAAATTTTTCTGGAATCAAAGAAATAATAAGATAAACACTTACTGTTTGCTGAGATGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4695</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>28941</contig_pos>
        <strand>+</strand>
        <context>ATCAAAGAAA[A/T]AATAAGRTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAACAGATTTCCAGAAATTACAATAAAAATTTTTCTGGAATCAAAGAAA</left_flank>
        <right_flank>AATAAGATAAACACTTACTGTTTGCTGAGATGAAGAGGTTCTCCGGTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCTCCAGACTTCCGAATATGATCAAACAGGTCAAAAATCAACTGAAAATTTTTTCGTATATTTTAACGACCGGTACTGTAAGTACATCGAATCCCAATAAAAAAGTTCTGATCCATTAGTTAGCGGAAAACTTAGCTCTCCACAGCATCCTTCCACGGCTCTTTTTTTGTGATCATATTCACCAACACGATTCCAGCAGCCCAGACGTCTACAGGAGGTCCTCTCCATCTTGCATTTTCCACTAAGATTTCAGGGGCCATGTAACCATGTGTTCCGCGTTTTCTATCCAGCATAATTTCATCTCCGTTGTCAGTTTTGCATGATCTTGCGAATCCAAAGTCGCCAATCTTGAGCACATCTGCAATAATACATGAGGTTTCAATAACAAAATGATTTTTAAGTTCATTTCTTCTATCTTTAGAGAGCATTTTGAAACTAAAACTGGAAAGAACAGATTTCCAGAAATTACAATAAAAATTTTTCTGGAATCAAAGAAATAATAAGATAAACACTTACTGTTTGCTGAGATGAAGAGGTTCTCCGGTTTTATATCGAGATGGATAATATCTTTTGAATGCATGTGTTGGAGTCCGGCGATCAAATGTTTGAAGAACCGGTGATACGGGACTGCGGACGGAGATTCAAAGATTAGGTGGAACAGATCGCCCATCGAAGCGAGCTCCATGAAGAAAACAGTTTGCAGTTCCACATTCTCCATGGCGAAAATTTTTATGACGTGGTCCGCTCCTTCGCTTGCCTTCATGTGTGACGAGAATTCCCGTTCGCTTCGGTGCGCGTCGTGCTTTATTGTTTTCATCGCAATTTGATTCTTCTCGGGATTGTTGTCAACTTTTTCCACCACCGAAACGGAGCCGAAATTTCCCGAAGTCAAGTCTCTGCGCCAGTTATAGCCGAGAAGGGGAGCGAGTTGTTGATTGGAAAGCATCTGAAAGTGGAGTTTATTGAATAAAGCAATGAGTTTAAAAATTAGGTGTTTT</canonical>
            <polymorphic>GAGCTCCAGACTTCCGAATATGATCAAACAGGTCAAAAATCAACTGAAAATTTTTTCGTATATTTTAACGACCGGTACTGTAAGTACATCGAATCCCAATAAAAAAGTTCTGATCCATTAGTTAGCGGAAAACTTAGCTCTCCACAGCATCCTTCCACGGCTCTTTTTTTGTGATCATATTCACCAACACGATTCCAGCAGCCCAGACGTCTACAGGAGGTCCTCTCCATCTTGCATTTTCCACTAAGATTTCAGGGGCCATGTAACCATGTGTTCCGCGTTTTCTATCCAGCATAATTTCATCTCCGTTGTCAGTTTTGCATGATCTTGCGAATCCAAAGTCGCCAATCTTGAGCACATCTGCAATAATACATGAGGTTTCAATAACAAAATGATTTTTAAGTTCATTTCTTCTATCTTTAGAGAGCATTTTGAAACTAAAACTGGAAAGAACAGATTTCCAGAAATTACAATAAAAATTTTTCTGGAATCAAAGAAAWAATAAGATAAACACTTACTGTTTGCTGAGATGAAGAGGTTCTCCGGTTTTATATCGAGATGGATAATATCTTTTGAATGCATGTGTTGGAGTCCGGCGATCAAATGTTTGAAGAACCGGTGATACGGGACTGCGGACGGAGATTCAAAGATTAGGTGGAACAGATCGCCCATCGAAGCGAGCTCCATGAAGAAAACAGTTTGCAGTTCCACATTCTCCATGGCGAAAATTTTTATGACGTGGTCCGCTCCTTCGCTTGCCTTCATGTGTGACGAGAATTCCCGTTCGCTTCGGTGCGCGTCGTGCTTTATTGTTTTCATCGCAATTTGATTCTTCTCGGGATTGTTGTCAACTTTTTCCACCACCGAAACGGAGCCGAAATTTCCCGAAGTCAAGTCTCTGCGCCAGTTATAGCCGAGAAGGGGAGCGAGTTGTTGATTGGAAAGCATCTGAAAGTGGAGTTTATTGAATAAAGCAATGAGTTTAAAAATTAGGTGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTATCTTTAGAGAGCATTTTGA</pcr_primer_p1>
		<pcr_primer_p2>GTTCCACCTAATCTTTGAATCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTATCTTTAGAGAGCATTTTGAAACTAAAACTGGAAAGAACAGATTTCCAGAAATTACAATAAAAATTTTTCTGGAATCAAAGAAATAATAAGATAAACACTTACTGTTTGCTGAGATGAAGAGGTTCTCCGGTTTTATATCGAGATGGATAATATCTTTTGAATGCATGTGTTGGAGTCCGGCGATCAAATGTTTGAAGAACCGGTGATACGGGACTGCGGACGGAGATTCAAAGATTAGGTGGAAC</canonical_amplicon>
		<polymorphic_amplicon>TTCTATCTTTAGAGAGCATTTTGAAACTAAAACTGGAAAGAACAGATTTCCAGAAATTACAATAAAAATTTTTCTGGAATCAAAGAAAWAATAAGATAAACACTTACTGTTTGCTGAGATGAAGAGGTTCTCCGGTTTTATATCGAGATGGATAATATCTTTTGAATGCATGTGTTGGAGTCCGGCGATCAAATGTTTGAAGAACCGGTGATACGGGACTGCGGACGGAGATTCAAAGATTAGGTGGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4697</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>29011</contig_pos>
        <strand>+</strand>
        <context>TGGATAATAT[C/T]TTTTGAATGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTGCTGAGATGAAGAGGTTCTCCGGTTTTATATCGAGATGGATAATAT</left_flank>
        <right_flank>TTTTGAATGCATGTGTTGGAGTCCGGCGATCAAATGTTTGAAGAACCGGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCGGTACTGTAAGTACATCGAATCCCAATAAAAAAGTTCTGATCCATTAGTTAGCGGAAAACTTAGCTCTCCACAGCATCCTTCCACGGCTCTTTTTTTGTGATCATATTCACCAACACGATTCCAGCAGCCCAGACGTCTACAGGAGGTCCTCTCCATCTTGCATTTTCCACTAAGATTTCAGGGGCCATGTAACCATGTGTTCCGCGTTTTCTATCCAGCATAATTTCATCTCCGTTGTCAGTTTTGCATGATCTTGCGAATCCAAAGTCGCCAATCTTGAGCACATCTGCAATAATACATGAGGTTTCAATAACAAAATGATTTTTAAGTTCATTTCTTCTATCTTTAGAGAGCATTTTGAAACTAAAACTGGAAAGAACAGATTTCCAGAAATTACAATAAAAATTTTTCTGGAATCAAAGAAATAATAAGATAAACACTTACTGTTTGCTGAGATGAAGAGGTTCTCCGGTTTTATATCGAGATGGATAATATCTTTTGAATGCATGTGTTGGAGTCCGGCGATCAAATGTTTGAAGAACCGGTGATACGGGACTGCGGACGGAGATTCAAAGATTAGGTGGAACAGATCGCCCATCGAAGCGAGCTCCATGAAGAAAACAGTTTGCAGTTCCACATTCTCCATGGCGAAAATTTTTATGACGTGGTCCGCTCCTTCGCTTGCCTTCATGTGTGACGAGAATTCCCGTTCGCTTCGGTGCGCGTCGTGCTTTATTGTTTTCATCGCAATTTGATTCTTCTCGGGATTGTTGTCAACTTTTTCCACCACCGAAACGGAGCCGAAATTTCCCGAAGTCAAGTCTCTGCGCCAGTTATAGCCGAGAAGGGGAGCGAGTTGTTGATTGGAAAGCATCTGAAAGTGGAGTTTATTGAATAAAGCAATGAGTTTAAAAATTAGGTGTTTTCCTTAAAGGAAAAAAAGACATTGAGAAAAAAAATATAAATTTTGTTCCTATCTAAAAATTAAGAAGTTGA</canonical>
            <polymorphic>ACCGGTACTGTAAGTACATCGAATCCCAATAAAAAAGTTCTGATCCATTAGTTAGCGGAAAACTTAGCTCTCCACAGCATCCTTCCACGGCTCTTTTTTTGTGATCATATTCACCAACACGATTCCAGCAGCCCAGACGTCTACAGGAGGTCCTCTCCATCTTGCATTTTCCACTAAGATTTCAGGGGCCATGTAACCATGTGTTCCGCGTTTTCTATCCAGCATAATTTCATCTCCGTTGTCAGTTTTGCATGATCTTGCGAATCCAAAGTCGCCAATCTTGAGCACATCTGCAATAATACATGAGGTTTCAATAACAAAATGATTTTTAAGTTCATTTCTTCTATCTTTAGAGAGCATTTTGAAACTAAAACTGGAAAGAACAGATTTCCAGAAATTACAATAAAAATTTTTCTGGAATCAAAGAAATAATAAGATAAACACTTACTGTTTGCTGAGATGAAGAGGTTCTCCGGTTTTATATCGAGATGGATAATATYTTTTGAATGCATGTGTTGGAGTCCGGCGATCAAATGTTTGAAGAACCGGTGATACGGGACTGCGGACGGAGATTCAAAGATTAGGTGGAACAGATCGCCCATCGAAGCGAGCTCCATGAAGAAAACAGTTTGCAGTTCCACATTCTCCATGGCGAAAATTTTTATGACGTGGTCCGCTCCTTCGCTTGCCTTCATGTGTGACGAGAATTCCCGTTCGCTTCGGTGCGCGTCGTGCTTTATTGTTTTCATCGCAATTTGATTCTTCTCGGGATTGTTGTCAACTTTTTCCACCACCGAAACGGAGCCGAAATTTCCCGAAGTCAAGTCTCTGCGCCAGTTATAGCCGAGAAGGGGAGCGAGTTGTTGATTGGAAAGCATCTGAAAGTGGAGTTTATTGAATAAAGCAATGAGTTTAAAAATTAGGTGTTTTCCTTAAAGGAAAAAAAGACATTGAGAAAAAAAATATAAATTTTGTTCCTATCTAAAAATTAAGAAGTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTATCTTTAGAGAGCATTTTGA</pcr_primer_p1>
		<pcr_primer_p2>GTTCCACCTAATCTTTGAATCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTATCTTTAGAGAGCATTTTGAAACTAAAACTGGAAAGAACAGATTTCCAGAAATTACAATAAAAATTTTTCTGGAATCAAAGAAATAATAAGATAAACACTTACTGTTTGCTGAGATGAAGAGGTTCTCCGGTTTTATATCGAGATGGATAATATCTTTTGAATGCATGTGTTGGAGTCCGGCGATCAAATGTTTGAAGAACCGGTGATACGGGACTGCGGACGGAGATTCAAAGATTAGGTGGAAC</canonical_amplicon>
		<polymorphic_amplicon>TTCTATCTTTAGAGAGCATTTTGAAACTAAAACTGGAAAGAACAGATTTCCAGAAATTACAATAAAAATTTTTCTGGAATCAAAGAAATAATAAGATAAACACTTACTGTTTGCTGAGATGAAGAGGTTCTCCGGTTTTATATCGAGATGGATAATATYTTTTGAATGCATGTGTTGGAGTCCGGCGATCAAATGTTTGAAGAACCGGTGATACGGGACTGCGGACGGAGATTCAAAGATTAGGTGGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4698</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>29252</contig_pos>
        <strand>+</strand>
        <context>CGTGCTTTAT[C/T]GTTTTCATCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCATGTGTGACGAGAATTCCCGTTCGCTTCGGTGCGCGTCGTGCTTTAT</left_flank>
        <right_flank>GTTTTCATCGCAATTTGATTCTTCTCGGGATTGTTGTCAACTTTTTCCAC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGTTTTGCATGATCTTGCGAATCCAAAGTCGCCAATCTTGAGCACATCTGCAATAATACATGAGGTTTCAATAACAAAATGATTTTTAAGTTCATTTCTTCTATCTTTAGAGAGCATTTTGAAACTAAAACTGGAAAGAACAGATTTCCAGAAATTACAATAAAAATTTTTCTGGAATCAAAGAAATAATAAGATAAACACTTACTGTTTGCTGAGATGAAGAGGTTCTCCGGTTTTATATCGAGATGGATAATATCTTTTGAATGCATGTGTTGGAGTCCGGCGATCAAATGTTTGAAGAACCGGTGATACGGGACTGCGGACGGAGATTCAAAGATTAGGTGGAACAGATCGCCCATCGAAGCGAGCTCCATGAAGAAAACAGTTTGCAGTTCCACATTCTCCATGGCGAAAATTTTTATGACGTGGTCCGCTCCTTCGCTTGCCTTCATGTGTGACGAGAATTCCCGTTCGCTTCGGTGCGCGTCGTGCTTTATTGTTTTCATCGCAATTTGATTCTTCTCGGGATTGTTGTCAACTTTTTCCACCACCGAAACGGAGCCGAAATTTCCCGAAGTCAAGTCTCTGCGCCAGTTATAGCCGAGAAGGGGAGCGAGTTGTTGATTGGAAAGCATCTGAAAGTGGAGTTTATTGAATAAAGCAATGAGTTTAAAAATTAGGTGTTTTCCTTAAAGGAAAAAAAGACATTGAGAAAAAAAATATAAATTTTGTTCCTATCTAAAAATTAAGAAGTTGAAGTTTTAAACCCAACACTCGAGGTGATGTGACACTACCATCTGAGATACGGTAGAGTAAACTGAAACGGCAGAAAGGTGAAAAACCAAAAAAAGTTGTCCTCTCCTTCAAGTGTCCGTTTCCCATATGCATCCCTCATTTTCCCACATTCCATTTTCTTTTTTATGTGTTATTTTTTCTAATTGTCATTGATTCAATGCAAAATTTCTCTTGGTTTCTCTTTTTGTTTGAAAAAGTCAGTT</canonical>
            <polymorphic>TCAGTTTTGCATGATCTTGCGAATCCAAAGTCGCCAATCTTGAGCACATCTGCAATAATACATGAGGTTTCAATAACAAAATGATTTTTAAGTTCATTTCTTCTATCTTTAGAGAGCATTTTGAAACTAAAACTGGAAAGAACAGATTTCCAGAAATTACAATAAAAATTTTTCTGGAATCAAAGAAATAATAAGATAAACACTTACTGTTTGCTGAGATGAAGAGGTTCTCCGGTTTTATATCGAGATGGATAATATCTTTTGAATGCATGTGTTGGAGTCCGGCGATCAAATGTTTGAAGAACCGGTGATACGGGACTGCGGACGGAGATTCAAAGATTAGGTGGAACAGATCGCCCATCGAAGCGAGCTCCATGAAGAAAACAGTTTGCAGTTCCACATTCTCCATGGCGAAAATTTTTATGACGTGGTCCGCTCCTTCGCTTGCCTTCATGTGTGACGAGAATTCCCGTTCGCTTCGGTGCGCGTCGTGCTTTATYGTTTTCATCGCAATTTGATTCTTCTCGGGATTGTTGTCAACTTTTTCCACCACCGAAACGGAGCCGAAATTTCCCGAAGTCAAGTCTCTGCGCCAGTTATAGCCGAGAAGGGGAGCGAGTTGTTGATTGGAAAGCATCTGAAAGTGGAGTTTATTGAATAAAGCAATGAGTTTAAAAATTAGGTGTTTTCCTTAAAGGAAAAAAAGACATTGAGAAAAAAAATATAAATTTTGTTCCTATCTAAAAATTAAGAAGTTGAAGTTTTAAACCCAACACTCGAGGTGATGTGACACTACCATCTGAGATACGGTAGAGTAAACTGAAACGGCAGAAAGGTGAAAAACCAAAAAAAGTTGTCCTCTCCTTCAAGTGTCCGTTTCCCATATGCATCCCTCATTTTCCCACATTCCATTTTCTTTTTTATGTGTTATTTTTTCTAATTGTCATTGATTCAATGCAAAATTTCTCTTGGTTTCTCTTTTTGTTTGAAAAAGTCAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTCATGTGTGACGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>CCTTTAAGGAAAACACCTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCTTCATGTGTGACGAGAATTCCCGTTCGCTTCGGTGCGCGTCGTGCTTTATTGTTTTCATCGCAATTTGATTCTTCTCGGGATTGTTGTCAACTTTTTCCACCACCGAAACGGAGCCGAAATTTCCCGAAGTCAAGTCTCTGCGCCAGTTATAGCCGAGAAGGGGAGCGAGTTGTTGATTGGAAAGCATCTGAAAGTGGAGTTTATTGAATAAAGCAATGAGTTTAAAAATTAGGTGTTTTCCTTAAAGG</canonical_amplicon>
		<polymorphic_amplicon>CCTTCATGTGTGACGAGAATTCCCGTTCGCTTCGGTGCGCGTCGTGCTTTATYGTTTTCATCGCAATTTGATTCTTCTCGGGATTGTTGTCAACTTTTTCCACCACCGAAACGGAGCCGAAATTTCCCGAAGTCAAGTCTCTGCGCCAGTTATAGCCGAGAAGGGGAGCGAGTTGTTGATTGGAAAGCATCTGAAAGTGGAGTTTATTGAATAAAGCAATGAGTTTAAAAATTAGGTGTTTTCCTTAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4699</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>31334</contig_pos>
        <strand></strand>
        <context>CGRAAAMAAA[G/A]GTGAAAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTTTTTTTTGAAAGAAGATTAAAAGACATTCGAATTTTTCGAAAACAAA</left_flank>
        <right_flank>GTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGACAACCGAGATAATCAAACTTAGAGAGGGCGTCGGCTTCTGTTGGAGCAAACACGGGATTGTAATCAAAGAAGGCGGGAACTTATTTTGAGTGATTTGATGACAGATCTTCTGTTAGTCTTTTTAACCGTATTTTACATGGTTTCAATACAAAAAATTACAGTAACCTTTGAAATCTGACAAGAACCTCAAACTTATGCTTTTTTAACCGGTATTTGGCAGTGGAAAGGACCTTTGATCGGCTTTTAACCAGCTCGAAATGTCGGAAAGATTATTTGAAAAGATAATGAAAAAAACTTATCACAATTTTCATCTAAAGTTGTACTTGTGTGTTGCGTGCTTGTCTTGATCCTGAGACTGCTGATAAAATCTGGAAGTGTTGATTCAAGACGAACCATTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTATTTTTTTTTGAAAGAAGATTAAAAGACATTCGAATTTTTCGAAAACAAAGGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCAAAAATAATTTATTGTTTTTTTTTTCCGATATTCAAATCGTGTTTAAATTTGTTTCAATTCTGCATTCATCTGATAAAAATTGAATCTTTTCTGCTGGTTTTCTTTAAGAATTAAAACTTTGTTGCGCAGTTTAAATTAAACTTTTTATAATAATCACATTTTTAGTTATTTTATTTAAATCTTATCACATGCTTTTGGAAAACAGACGATGCAGAACTCGTCCAAAAAACCTCAAAGATTGTGTTCAGAAGAAAACCTCTGTTTTAAATTACCGCGCTTGTTTTTCGGCGGATGGCCTAGAAACCTTCCCGCTCTTCCATCCCCTTTTTTCTTAATGAAAAGGCATAACGAGATCATTTAAGTGAATTTTATCAGATTTTCACCAGATTTTGGTCGCCTTTTCTGCGGAAATGTGTCAAAAACAATTTTAAAAGTAAGTTTTTTTTTTTC</canonical>
            <polymorphic>TATGACAACCGAGATAATCAAACTTAGAGAGGGCGTCGGCTTCTGTTGGAGCAAACACGGGATTGTAATCAAAGAAGGCGGGAACTTATTTTGAGTGATTTGATGACAGATCTTCTGTTAGTCTTTTTAACCGTATTTTACATGGTTTCAATACAAAAAATTACAGTAACCTTTGAAATCTGACAAGAACCTCAAACTTATGCTTTTTTAACCGGTATTTGGCAGTGGAAAGGACCTTTGATCGGCTTTTAACCAGCTCGAAATGTCGGAAAGATTATTTGAAAAGATAATGAAAAAAACTTATCACAATTTTCATCTAAAGTTGTACTTGTGTGTTGCGTGCTTGTCTTGATCCTGAGACTGCTGATAAAATCTGGAAGTGTTGATTCAAGACGAACCATTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTATTTTTTTTTGAAAGAAGATTAAAAGACATTCGAATTTTTCGAAAACAAARGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCAAAAATAATTTATTGTTTTTTTTTTCCGATATTCAAATCGTGTTTAAATTTGTTTCAATTCTGCATTCATCTGATAAAAATTGAATCTTTTCTGCTGGTTTTCTTTAAGAATTAAAACTTTGTTGCGCAGTTTAAATTAAACTTTTTATAATAATCACATTTTTAGTTATTTTATTTAAATCTTATCACATGCTTTTGGAAAACAGACGATGCAGAACTCGTCCAAAAAACCTCAAAGATTGTGTTCAGAAGAAAACCTCTGTTTTAAATTACCGCGCTTGTTTTTCGGCGGATGGCCTAGAAACCTTCCCGCTCTTCCATCCCCTTTTTTCTTAATGAAAAGGCATAACGAGATCATTTAAGTGAATTTTATCAGATTTTCACCAGATTTTGGTCGCCTTTTCTGCGGAAATGTGTCAAAAACAATTTTAAAAGTAAGTTTTTTTTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATAAAATCTGGAAGTGTTGAT</pcr_primer_p1>
		<pcr_primer_p2>ATTGAAACAAATTTAAACACGAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TGATAAAATCTGGAAGTGTTGATTCAAGACGAACCATTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTATTTTTTTTTGAAAGAAGATTAAAAGACATTCGAATTTTTCGAAAACAAAGGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCAAAAATAATTTATTGTTTTTTTTTTCCGATATTCAAATCGTGTTTAAATTTGTTTCAAT</canonical_amplicon>
		<polymorphic_amplicon>TGATAAAATCTGGAAGTGTTGATTCAAGACGAACCATTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTATTTTTTTTTGAAAGAAGATTAAAAGACATTCGAATTTTTCGAAAACAAARGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCAAAAATAATTTATTGTTTTTTTTTTCCGATATTCAAATCGTGTTTAAATTTGTTTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4700</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>31330</contig_pos>
        <strand></strand>
        <context>TTTTCGRAAA[C/A]AAARGTGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GAGTATTTTTTTTTGAAAGAAGATTAAAAGACATTCGAATTTTTCGAAAA</left_flank>
        <right_flank>AAAGGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTATGACAACCGAGATAATCAAACTTAGAGAGGGCGTCGGCTTCTGTTGGAGCAAACACGGGATTGTAATCAAAGAAGGCGGGAACTTATTTTGAGTGATTTGATGACAGATCTTCTGTTAGTCTTTTTAACCGTATTTTACATGGTTTCAATACAAAAAATTACAGTAACCTTTGAAATCTGACAAGAACCTCAAACTTATGCTTTTTTAACCGGTATTTGGCAGTGGAAAGGACCTTTGATCGGCTTTTAACCAGCTCGAAATGTCGGAAAGATTATTTGAAAAGATAATGAAAAAAACTTATCACAATTTTCATCTAAAGTTGTACTTGTGTGTTGCGTGCTTGTCTTGATCCTGAGACTGCTGATAAAATCTGGAAGTGTTGATTCAAGACGAACCATTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTATTTTTTTTTGAAAGAAGATTAAAAGACATTCGAATTTTTCGAAAACAAAGGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCAAAAATAATTTATTGTTTTTTTTTTCCGATATTCAAATCGTGTTTAAATTTGTTTCAATTCTGCATTCATCTGATAAAAATTGAATCTTTTCTGCTGGTTTTCTTTAAGAATTAAAACTTTGTTGCGCAGTTTAAATTAAACTTTTTATAATAATCACATTTTTAGTTATTTTATTTAAATCTTATCACATGCTTTTGGAAAACAGACGATGCAGAACTCGTCCAAAAAACCTCAAAGATTGTGTTCAGAAGAAAACCTCTGTTTTAAATTACCGCGCTTGTTTTTCGGCGGATGGCCTAGAAACCTTCCCGCTCTTCCATCCCCTTTTTTCTTAATGAAAAGGCATAACGAGATCATTTAAGTGAATTTTATCAGATTTTCACCAGATTTTGGTCGCCTTTTCTGCGGAAATGTGTCAAAAACAATTTTAAAAGTAAGTTTTTTTT</canonical>
            <polymorphic>GATTTATGACAACCGAGATAATCAAACTTAGAGAGGGCGTCGGCTTCTGTTGGAGCAAACACGGGATTGTAATCAAAGAAGGCGGGAACTTATTTTGAGTGATTTGATGACAGATCTTCTGTTAGTCTTTTTAACCGTATTTTACATGGTTTCAATACAAAAAATTACAGTAACCTTTGAAATCTGACAAGAACCTCAAACTTATGCTTTTTTAACCGGTATTTGGCAGTGGAAAGGACCTTTGATCGGCTTTTAACCAGCTCGAAATGTCGGAAAGATTATTTGAAAAGATAATGAAAAAAACTTATCACAATTTTCATCTAAAGTTGTACTTGTGTGTTGCGTGCTTGTCTTGATCCTGAGACTGCTGATAAAATCTGGAAGTGTTGATTCAAGACGAACCATTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTATTTTTTTTTGAAAGAAGATTAAAAGACATTCGAATTTTTCGAAAAMAAAGGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCAAAAATAATTTATTGTTTTTTTTTTCCGATATTCAAATCGTGTTTAAATTTGTTTCAATTCTGCATTCATCTGATAAAAATTGAATCTTTTCTGCTGGTTTTCTTTAAGAATTAAAACTTTGTTGCGCAGTTTAAATTAAACTTTTTATAATAATCACATTTTTAGTTATTTTATTTAAATCTTATCACATGCTTTTGGAAAACAGACGATGCAGAACTCGTCCAAAAAACCTCAAAGATTGTGTTCAGAAGAAAACCTCTGTTTTAAATTACCGCGCTTGTTTTTCGGCGGATGGCCTAGAAACCTTCCCGCTCTTCCATCCCCTTTTTTCTTAATGAAAAGGCATAACGAGATCATTTAAGTGAATTTTATCAGATTTTCACCAGATTTTGGTCGCCTTTTCTGCGGAAATGTGTCAAAAACAATTTTAAAAGTAAGTTTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATAAAATCTGGAAGTGTTGAT</pcr_primer_p1>
		<pcr_primer_p2>ATTGAAACAAATTTAAACACGAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TGATAAAATCTGGAAGTGTTGATTCAAGACGAACCATTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTATTTTTTTTTGAAAGAAGATTAAAAGACATTCGAATTTTTCGAAAACAAAGGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCAAAAATAATTTATTGTTTTTTTTTTCCGATATTCAAATCGTGTTTAAATTTGTTTCAAT</canonical_amplicon>
		<polymorphic_amplicon>TGATAAAATCTGGAAGTGTTGATTCAAGACGAACCATTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTATTTTTTTTTGAAAGAAGATTAAAAGACATTCGAATTTTTCGAAAAMAAAGGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCAAAAATAATTTATTGTTTTTTTTTTCCGATATTCAAATCGTGTTTAAATTTGTTTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4701</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>31311</contig_pos>
        <strand></strand>
        <context>GATKAAAAGA[C/T]ATTCGAATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAAATTGCAAACAAAAAAGAGTATTTTTTTTTGAAAGAAGATTAAAAGA</left_flank>
        <right_flank>ATTCGAATTTTTCGAAAACAAAGGTGAAAAAATGGAATGGATTTAGACAG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGAAAACTTTTTGGTATGATTTATGACAACCGAGATAATCAAACTTAGAGAGGGCGTCGGCTTCTGTTGGAGCAAACACGGGATTGTAATCAAAGAAGGCGGGAACTTATTTTGAGTGATTTGATGACAGATCTTCTGTTAGTCTTTTTAACCGTATTTTACATGGTTTCAATACAAAAAATTACAGTAACCTTTGAAATCTGACAAGAACCTCAAACTTATGCTTTTTTAACCGGTATTTGGCAGTGGAAAGGACCTTTGATCGGCTTTTAACCAGCTCGAAATGTCGGAAAGATTATTTGAAAAGATAATGAAAAAAACTTATCACAATTTTCATCTAAAGTTGTACTTGTGTGTTGCGTGCTTGTCTTGATCCTGAGACTGCTGATAAAATCTGGAAGTGTTGATTCAAGACGAACCATTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTATTTTTTTTTGAAAGAAGATTAAAAGACATTCGAATTTTTCGAAAACAAAGGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCAAAAATAATTTATTGTTTTTTTTTTCCGATATTCAAATCGTGTTTAAATTTGTTTCAATTCTGCATTCATCTGATAAAAATTGAATCTTTTCTGCTGGTTTTCTTTAAGAATTAAAACTTTGTTGCGCAGTTTAAATTAAACTTTTTATAATAATCACATTTTTAGTTATTTTATTTAAATCTTATCACATGCTTTTGGAAAACAGACGATGCAGAACTCGTCCAAAAAACCTCAAAGATTGTGTTCAGAAGAAAACCTCTGTTTTAAATTACCGCGCTTGTTTTTCGGCGGATGGCCTAGAAACCTTCCCGCTCTTCCATCCCCTTTTTTCTTAATGAAAAGGCATAACGAGATCATTTAAGTGAATTTTATCAGATTTTCACCAGATTTTGGTCGCCTTTTCTGCGGAAATGTGTCAAAAACAATT</canonical>
            <polymorphic>ATTGAAAACTTTTTGGTATGATTTATGACAACCGAGATAATCAAACTTAGAGAGGGCGTCGGCTTCTGTTGGAGCAAACACGGGATTGTAATCAAAGAAGGCGGGAACTTATTTTGAGTGATTTGATGACAGATCTTCTGTTAGTCTTTTTAACCGTATTTTACATGGTTTCAATACAAAAAATTACAGTAACCTTTGAAATCTGACAAGAACCTCAAACTTATGCTTTTTTAACCGGTATTTGGCAGTGGAAAGGACCTTTGATCGGCTTTTAACCAGCTCGAAATGTCGGAAAGATTATTTGAAAAGATAATGAAAAAAACTTATCACAATTTTCATCTAAAGTTGTACTTGTGTGTTGCGTGCTTGTCTTGATCCTGAGACTGCTGATAAAATCTGGAAGTGTTGATTCAAGACGAACCATTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTATTTTTTTTTGAAAGAAGATTAAAAGAYATTCGAATTTTTCGAAAACAAAGGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCAAAAATAATTTATTGTTTTTTTTTTCCGATATTCAAATCGTGTTTAAATTTGTTTCAATTCTGCATTCATCTGATAAAAATTGAATCTTTTCTGCTGGTTTTCTTTAAGAATTAAAACTTTGTTGCGCAGTTTAAATTAAACTTTTTATAATAATCACATTTTTAGTTATTTTATTTAAATCTTATCACATGCTTTTGGAAAACAGACGATGCAGAACTCGTCCAAAAAACCTCAAAGATTGTGTTCAGAAGAAAACCTCTGTTTTAAATTACCGCGCTTGTTTTTCGGCGGATGGCCTAGAAACCTTCCCGCTCTTCCATCCCCTTTTTTCTTAATGAAAAGGCATAACGAGATCATTTAAGTGAATTTTATCAGATTTTCACCAGATTTTGGTCGCCTTTTCTGCGGAAATGTGTCAAAAACAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATAAAATCTGGAAGTGTTGAT</pcr_primer_p1>
		<pcr_primer_p2>ATTGAAACAAATTTAAACACGAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TGATAAAATCTGGAAGTGTTGATTCAAGACGAACCATTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTATTTTTTTTTGAAAGAAGATTAAAAGACATTCGAATTTTTCGAAAACAAAGGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCAAAAATAATTTATTGTTTTTTTTTTCCGATATTCAAATCGTGTTTAAATTTGTTTCAAT</canonical_amplicon>
		<polymorphic_amplicon>TGATAAAATCTGGAAGTGTTGATTCAAGACGAACCATTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTATTTTTTTTTGAAAGAAGATTAAAAGAYATTCGAATTTTTCGAAAACAAAGGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCAAAAATAATTTATTGTTTTTTTTTTCCGATATTCAAATCGTGTTTAAATTTGTTTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4702</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>31304</contig_pos>
        <strand></strand>
        <context>GAAAGAAGAT[T/G]AAAAGAYATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TGTACCTGGAAATTGCAAACAAAAAAGAGTATTTTTTTTTGAAAGAAGAT</left_flank>
        <right_flank>AAAAGACATTCGAATTTTTCGAAAACAAAGGTGAAAAAATGGAATGGATT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTCAATTGAAAACTTTTTGGTATGATTTATGACAACCGAGATAATCAAACTTAGAGAGGGCGTCGGCTTCTGTTGGAGCAAACACGGGATTGTAATCAAAGAAGGCGGGAACTTATTTTGAGTGATTTGATGACAGATCTTCTGTTAGTCTTTTTAACCGTATTTTACATGGTTTCAATACAAAAAATTACAGTAACCTTTGAAATCTGACAAGAACCTCAAACTTATGCTTTTTTAACCGGTATTTGGCAGTGGAAAGGACCTTTGATCGGCTTTTAACCAGCTCGAAATGTCGGAAAGATTATTTGAAAAGATAATGAAAAAAACTTATCACAATTTTCATCTAAAGTTGTACTTGTGTGTTGCGTGCTTGTCTTGATCCTGAGACTGCTGATAAAATCTGGAAGTGTTGATTCAAGACGAACCATTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTATTTTTTTTTGAAAGAAGATTAAAAGACATTCGAATTTTTCGAAAACAAAGGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCAAAAATAATTTATTGTTTTTTTTTTCCGATATTCAAATCGTGTTTAAATTTGTTTCAATTCTGCATTCATCTGATAAAAATTGAATCTTTTCTGCTGGTTTTCTTTAAGAATTAAAACTTTGTTGCGCAGTTTAAATTAAACTTTTTATAATAATCACATTTTTAGTTATTTTATTTAAATCTTATCACATGCTTTTGGAAAACAGACGATGCAGAACTCGTCCAAAAAACCTCAAAGATTGTGTTCAGAAGAAAACCTCTGTTTTAAATTACCGCGCTTGTTTTTCGGCGGATGGCCTAGAAACCTTCCCGCTCTTCCATCCCCTTTTTTCTTAATGAAAAGGCATAACGAGATCATTTAAGTGAATTTTATCAGATTTTCACCAGATTTTGGTCGCCTTTTCTGCGGAAATGTGTCAAA</canonical>
            <polymorphic>TTTCTCAATTGAAAACTTTTTGGTATGATTTATGACAACCGAGATAATCAAACTTAGAGAGGGCGTCGGCTTCTGTTGGAGCAAACACGGGATTGTAATCAAAGAAGGCGGGAACTTATTTTGAGTGATTTGATGACAGATCTTCTGTTAGTCTTTTTAACCGTATTTTACATGGTTTCAATACAAAAAATTACAGTAACCTTTGAAATCTGACAAGAACCTCAAACTTATGCTTTTTTAACCGGTATTTGGCAGTGGAAAGGACCTTTGATCGGCTTTTAACCAGCTCGAAATGTCGGAAAGATTATTTGAAAAGATAATGAAAAAAACTTATCACAATTTTCATCTAAAGTTGTACTTGTGTGTTGCGTGCTTGTCTTGATCCTGAGACTGCTGATAAAATCTGGAAGTGTTGATTCAAGACGAACCATTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTATTTTTTTTTGAAAGAAGATKAAAAGACATTCGAATTTTTCGAAAACAAAGGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCAAAAATAATTTATTGTTTTTTTTTTCCGATATTCAAATCGTGTTTAAATTTGTTTCAATTCTGCATTCATCTGATAAAAATTGAATCTTTTCTGCTGGTTTTCTTTAAGAATTAAAACTTTGTTGCGCAGTTTAAATTAAACTTTTTATAATAATCACATTTTTAGTTATTTTATTTAAATCTTATCACATGCTTTTGGAAAACAGACGATGCAGAACTCGTCCAAAAAACCTCAAAGATTGTGTTCAGAAGAAAACCTCTGTTTTAAATTACCGCGCTTGTTTTTCGGCGGATGGCCTAGAAACCTTCCCGCTCTTCCATCCCCTTTTTTCTTAATGAAAAGGCATAACGAGATCATTTAAGTGAATTTTATCAGATTTTCACCAGATTTTGGTCGCCTTTTCTGCGGAAATGTGTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>220 157 124 89 81 68 62 61 41 39 26 20 7 5</canonical_bands>
                <polymorphic_bands>344 157 89 81 68 62 61 41 39 26 20 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATAAAATCTGGAAGTGTTGAT</pcr_primer_p1>
		<pcr_primer_p2>ATTGAAACAAATTTAAACACGAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TGATAAAATCTGGAAGTGTTGATTCAAGACGAACCATTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTATTTTTTTTTGAAAGAAGATTAAAAGACATTCGAATTTTTCGAAAACAAAGGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCAAAAATAATTTATTGTTTTTTTTTTCCGATATTCAAATCGTGTTTAAATTTGTTTCAAT</canonical_amplicon>
		<polymorphic_amplicon>TGATAAAATCTGGAAGTGTTGATTCAAGACGAACCATTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTATTTTTTTTTGAAAGAAGATKAAAAGACATTCGAATTTTTCGAAAACAAAGGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCAAAAATAATTTATTGTTTTTTTTTTCCGATATTCAAATCGTGTTTAAATTTGTTTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4703</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>31071</contig_pos>
        <strand>+</strand>
        <context>GGAAAGGACC[A/T]TTGATCGGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAACCTCAAACTTATGCTTTTTTAACCGGTATTTGGCAGTGGAAAGGACC</left_flank>
        <right_flank>TTGATCGGCTTTTAACCAGCTCGAAATGTCGGAAAGATTATTTGAAAAGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATGAAGAAGGGCTTAATTTAGTATGAAAGACAGTTTTGAGAAAACAGGGTCGAGCTCACAATTCCAAAACAACTGATTATGATCAATTTCCATGTTTGATTAATGGATATCATATTTGCTCTGATAAAAGCTCAACCTTTCCCAAGATTTTAAGCTCAATTATATCAGTTCGTTGAAGAGTTATCAAAAGTGATCAACTGGTAAAGTGTTTATCATATTATCTCCAACATTTTTCTCAATTGAAAACTTTTTGGTATGATTTATGACAACCGAGATAATCAAACTTAGAGAGGGCGTCGGCTTCTGTTGGAGCAAACACGGGATTGTAATCAAAGAAGGCGGGAACTTATTTTGAGTGATTTGATGACAGATCTTCTGTTAGTCTTTTTAACCGTATTTTACATGGTTTCAATACAAAAAATTACAGTAACCTTTGAAATCTGACAAGAACCTCAAACTTATGCTTTTTTAACCGGTATTTGGCAGTGGAAAGGACCTTTGATCGGCTTTTAACCAGCTCGAAATGTCGGAAAGATTATTTGAAAAGATAATGAAAAAAACTTATCACAATTTTCATCTAAAGTTGTACTTGTGTGTTGCGTGCTTGTCTTGATCCTGAGACTGCTGATAAAATCTGGAAGTGTTGATTCAAGACGAACCATTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTATTTTTTTTTGAAAGAAGATTAAAAGACATTCGAATTTTTCGAAAACAAAGGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCAAAAATAATTTATTGTTTTTTTTTTCCGATATTCAAATCGTGTTTAAATTTGTTTCAATTCTGCATTCATCTGATAAAAATTGAATCTTTTCTGCTGGTTTTCTTTAAGAATTAAAACTTTGTTGCGCAGTTTAAATTAAACTTTTTATAATAATCACATTTTTAGTTATTTTATTTAAATCTTATCA</canonical>
            <polymorphic>ATATGAAGAAGGGCTTAATTTAGTATGAAAGACAGTTTTGAGAAAACAGGGTCGAGCTCACAATTCCAAAACAACTGATTATGATCAATTTCCATGTTTGATTAATGGATATCATATTTGCTCTGATAAAAGCTCAACCTTTCCCAAGATTTTAAGCTCAATTATATCAGTTCGTTGAAGAGTTATCAAAAGTGATCAACTGGTAAAGTGTTTATCATATTATCTCCAACATTTTTCTCAATTGAAAACTTTTTGGTATGATTTATGACAACCGAGATAATCAAACTTAGAGAGGGCGTCGGCTTCTGTTGGAGCAAACACGGGATTGTAATCAAAGAAGGCGGGAACTTATTTTGAGTGATTTGATGACAGATCTTCTGTTAGTCTTTTTAACCGTATTTTACATGGTTTCAATACAAAAAATTACAGTAACCTTTGAAATCTGACAAGAACCTCAAACTTATGCTTTTTTAACCGGTATTTGGCAGTGGAAAGGACCWTTGATCGGCTTTTAACCAGCTCGAAATGTCGGAAAGATTATTTGAAAAGATAATGAAAAAAACTTATCACAATTTTCATCTAAAGTTGTACTTGTGTGTTGCGTGCTTGTCTTGATCCTGAGACTGCTGATAAAATCTGGAAGTGTTGATTCAAGACGAACCATTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTATTTTTTTTTGAAAGAAGATTAAAAGACATTCGAATTTTTCGAAAACAAAGGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCAAAAATAATTTATTGTTTTTTTTTTCCGATATTCAAATCGTGTTTAAATTTGTTTCAATTCTGCATTCATCTGATAAAAATTGAATCTTTTCTGCTGGTTTTCTTTAAGAATTAAAACTTTGTTGCGCAGTTTAAATTAAACTTTTTATAATAATCACATTTTTAGTTATTTTATTTAAATCTTATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AGGWCCT</site>
                <isoschizomers>
                    <enzyme>Sse8647I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTACATGGTTTCAATACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATCAACACTTCCAGATTTTATCA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTACATGGTTTCAATACAAAAAATTACAGTAACCTTTGAAATCTGACAAGAACCTCAAACTTATGCTTTTTTAACCGGTATTTGGCAGTGGAAAGGACCTTTGATCGGCTTTTAACCAGCTCGAAATGTCGGAAAGATTATTTGAAAAGATAATGAAAAAAACTTATCACAATTTTCATCTAAAGTTGTACTTGTGTGTTGCGTGCTTGTCTTGATCCTGAGACTGCTGATAAAATCTGGAAGTGTTGAT</canonical_amplicon>
		<polymorphic_amplicon>TTTACATGGTTTCAATACAAAAAATTACAGTAACCTTTGAAATCTGACAAGAACCTCAAACTTATGCTTTTTTAACCGGTATTTGGCAGTGGAAAGGACCWTTGATCGGCTTTTAACCAGCTCGAAATGTCGGAAAGATTATTTGAAAAGATAATGAAAAAAACTTATCACAATTTTCATCTAAAGTTGTACTTGTGTGTTGCGTGCTTGTCTTGATCCTGAGACTGCTGATAAAATCTGGAAGTGTTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4704</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>31050</contig_pos>
        <strand>+</strand>
        <context>TTTTAACCGG[C/T]ATTTGGCAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTAACCTTTGAAATCTGACAAGAACCTCAAACTTATGCTTTTTTAACCGG</left_flank>
        <right_flank>ATTTGGCAGTGGAAAGGACCTTTGATCGGCTTTTAACCAGCTCGAAATGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCGTCACGTGCAAAAAAAAAATATGAAGAAGGGCTTAATTTAGTATGAAAGACAGTTTTGAGAAAACAGGGTCGAGCTCACAATTCCAAAACAACTGATTATGATCAATTTCCATGTTTGATTAATGGATATCATATTTGCTCTGATAAAAGCTCAACCTTTCCCAAGATTTTAAGCTCAATTATATCAGTTCGTTGAAGAGTTATCAAAAGTGATCAACTGGTAAAGTGTTTATCATATTATCTCCAACATTTTTCTCAATTGAAAACTTTTTGGTATGATTTATGACAACCGAGATAATCAAACTTAGAGAGGGCGTCGGCTTCTGTTGGAGCAAACACGGGATTGTAATCAAAGAAGGCGGGAACTTATTTTGAGTGATTTGATGACAGATCTTCTGTTAGTCTTTTTAACCGTATTTTACATGGTTTCAATACAAAAAATTACAGTAACCTTTGAAATCTGACAAGAACCTCAAACTTATGCTTTTTTAACCGGTATTTGGCAGTGGAAAGGACCTTTGATCGGCTTTTAACCAGCTCGAAATGTCGGAAAGATTATTTGAAAAGATAATGAAAAAAACTTATCACAATTTTCATCTAAAGTTGTACTTGTGTGTTGCGTGCTTGTCTTGATCCTGAGACTGCTGATAAAATCTGGAAGTGTTGATTCAAGACGAACCATTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTATTTTTTTTTGAAAGAAGATTAAAAGACATTCGAATTTTTCGAAAACAAAGGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCAAAAATAATTTATTGTTTTTTTTTTCCGATATTCAAATCGTGTTTAAATTTGTTTCAATTCTGCATTCATCTGATAAAAATTGAATCTTTTCTGCTGGTTTTCTTTAAGAATTAAAACTTTGTTGCGCAGTTTAAATTAAACTTTTTATAATAATCACATTTTTAGT</canonical>
            <polymorphic>TGCGTCACGTGCAAAAAAAAAATATGAAGAAGGGCTTAATTTAGTATGAAAGACAGTTTTGAGAAAACAGGGTCGAGCTCACAATTCCAAAACAACTGATTATGATCAATTTCCATGTTTGATTAATGGATATCATATTTGCTCTGATAAAAGCTCAACCTTTCCCAAGATTTTAAGCTCAATTATATCAGTTCGTTGAAGAGTTATCAAAAGTGATCAACTGGTAAAGTGTTTATCATATTATCTCCAACATTTTTCTCAATTGAAAACTTTTTGGTATGATTTATGACAACCGAGATAATCAAACTTAGAGAGGGCGTCGGCTTCTGTTGGAGCAAACACGGGATTGTAATCAAAGAAGGCGGGAACTTATTTTGAGTGATTTGATGACAGATCTTCTGTTAGTCTTTTTAACCGTATTTTACATGGTTTCAATACAAAAAATTACAGTAACCTTTGAAATCTGACAAGAACCTCAAACTTATGCTTTTTTAACCGGYATTTGGCAGTGGAAAGGACCTTTGATCGGCTTTTAACCAGCTCGAAATGTCGGAAAGATTATTTGAAAAGATAATGAAAAAAACTTATCACAATTTTCATCTAAAGTTGTACTTGTGTGTTGCGTGCTTGTCTTGATCCTGAGACTGCTGATAAAATCTGGAAGTGTTGATTCAAGACGAACCATTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTATTTTTTTTTGAAAGAAGATTAAAAGACATTCGAATTTTTCGAAAACAAAGGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCAAAAATAATTTATTGTTTTTTTTTTCCGATATTCAAATCGTGTTTAAATTTGTTTCAATTCTGCATTCATCTGATAAAAATTGAATCTTTTCTGCTGGTTTTCTTTAAGAATTAAAACTTTGTTGCGCAGTTTAAATTAAACTTTTTATAATAATCACATTTTTAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACCGGT</site>
                <isoschizomers>
                    <enzyme>AgeI</enzyme>
                    <enzyme>AsiAI</enzyme>
                    <enzyme>BshTI</enzyme>
                    <enzyme>CspAI</enzyme>
                    <enzyme>PinAI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTACATGGTTTCAATACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATCAACACTTCCAGATTTTATCA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTACATGGTTTCAATACAAAAAATTACAGTAACCTTTGAAATCTGACAAGAACCTCAAACTTATGCTTTTTTAACCGGTATTTGGCAGTGGAAAGGACCTTTGATCGGCTTTTAACCAGCTCGAAATGTCGGAAAGATTATTTGAAAAGATAATGAAAAAAACTTATCACAATTTTCATCTAAAGTTGTACTTGTGTGTTGCGTGCTTGTCTTGATCCTGAGACTGCTGATAAAATCTGGAAGTGTTGAT</canonical_amplicon>
		<polymorphic_amplicon>TTTACATGGTTTCAATACAAAAAATTACAGTAACCTTTGAAATCTGACAAGAACCTCAAACTTATGCTTTTTTAACCGGYATTTGGCAGTGGAAAGGACCTTTGATCGGCTTTTAACCAGCTCGAAATGTCGGAAAGATTATTTGAAAAGATAATGAAAAAAACTTATCACAATTTTCATCTAAAGTTGTACTTGTGTGTTGCGTGCTTGTCTTGATCCTGAGACTGCTGATAAAATCTGGAAGTGTTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4705</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>30966</contig_pos>
        <strand>+</strand>
        <context>TCTTTTTAAC[C/G]GTATTTTACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAACTTATTTTGAGTGATTTGATGACAGATCTTCTGTTAGTCTTTTTAAC</left_flank>
        <right_flank>GTATTTTACATGGTTTCAATACAAAAAATTACAGTAACCTTTGAAATCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAGGCTGAGAAAATGACGAAATGAAAAAACCATGCTGAGAAATGAGAACACAAAAACGAACATCCGTGTACGCATAGAGTATGCGTCACGTGCAAAAAAAAAATATGAAGAAGGGCTTAATTTAGTATGAAAGACAGTTTTGAGAAAACAGGGTCGAGCTCACAATTCCAAAACAACTGATTATGATCAATTTCCATGTTTGATTAATGGATATCATATTTGCTCTGATAAAAGCTCAACCTTTCCCAAGATTTTAAGCTCAATTATATCAGTTCGTTGAAGAGTTATCAAAAGTGATCAACTGGTAAAGTGTTTATCATATTATCTCCAACATTTTTCTCAATTGAAAACTTTTTGGTATGATTTATGACAACCGAGATAATCAAACTTAGAGAGGGCGTCGGCTTCTGTTGGAGCAAACACGGGATTGTAATCAAAGAAGGCGGGAACTTATTTTGAGTGATTTGATGACAGATCTTCTGTTAGTCTTTTTAACCGTATTTTACATGGTTTCAATACAAAAAATTACAGTAACCTTTGAAATCTGACAAGAACCTCAAACTTATGCTTTTTTAACCGGTATTTGGCAGTGGAAAGGACCTTTGATCGGCTTTTAACCAGCTCGAAATGTCGGAAAGATTATTTGAAAAGATAATGAAAAAAACTTATCACAATTTTCATCTAAAGTTGTACTTGTGTGTTGCGTGCTTGTCTTGATCCTGAGACTGCTGATAAAATCTGGAAGTGTTGATTCAAGACGAACCATTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTATTTTTTTTTGAAAGAAGATTAAAAGACATTCGAATTTTTCGAAAACAAAGGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCAAAAATAATTTATTGTTTTTTTTTTCCGATATTCAAATCGTGTTTAAATTTGTTTCAATTCTGCATTCATCTGATAAAAATTG</canonical>
            <polymorphic>AAAAAGGCTGAGAAAATGACGAAATGAAAAAACCATGCTGAGAAATGAGAACACAAAAACGAACATCCGTGTACGCATAGAGTATGCGTCACGTGCAAAAAAAAAATATGAAGAAGGGCTTAATTTAGTATGAAAGACAGTTTTGAGAAAACAGGGTCGAGCTCACAATTCCAAAACAACTGATTATGATCAATTTCCATGTTTGATTAATGGATATCATATTTGCTCTGATAAAAGCTCAACCTTTCCCAAGATTTTAAGCTCAATTATATCAGTTCGTTGAAGAGTTATCAAAAGTGATCAACTGGTAAAGTGTTTATCATATTATCTCCAACATTTTTCTCAATTGAAAACTTTTTGGTATGATTTATGACAACCGAGATAATCAAACTTAGAGAGGGCGTCGGCTTCTGTTGGAGCAAACACGGGATTGTAATCAAAGAAGGCGGGAACTTATTTTGAGTGATTTGATGACAGATCTTCTGTTAGTCTTTTTAACSGTATTTTACATGGTTTCAATACAAAAAATTACAGTAACCTTTGAAATCTGACAAGAACCTCAAACTTATGCTTTTTTAACCGGTATTTGGCAGTGGAAAGGACCTTTGATCGGCTTTTAACCAGCTCGAAATGTCGGAAAGATTATTTGAAAAGATAATGAAAAAAACTTATCACAATTTTCATCTAAAGTTGTACTTGTGTGTTGCGTGCTTGTCTTGATCCTGAGACTGCTGATAAAATCTGGAAGTGTTGATTCAAGACGAACCATTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTATTTTTTTTTGAAAGAAGATTAAAAGACATTCGAATTTTTCGAAAACAAAGGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCAAAAATAATTTATTGTTTTTTTTTTCCGATATTCAAATCGTGTTTAAATTTGTTTCAATTCTGCATTCATCTGATAAAAATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGGAACTTATTTTGAGTGAT</pcr_primer_p1>
		<pcr_primer_p2>CAACTTTAGATGAAAATTGTGATAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CGGGAACTTATTTTGAGTGATTTGATGACAGATCTTCTGTTAGTCTTTTTAACCGTATTTTACATGGTTTCAATACAAAAAATTACAGTAACCTTTGAAATCTGACAAGAACCTCAAACTTATGCTTTTTTAACCGGTATTTGGCAGTGGAAAGGACCTTTGATCGGCTTTTAACCAGCTCGAAATGTCGGAAAGATTATTTGAAAAGATAATGAAAAAAACTTATCACAATTTTCATCTAAAGTTG</canonical_amplicon>
		<polymorphic_amplicon>CGGGAACTTATTTTGAGTGATTTGATGACAGATCTTCTGTTAGTCTTTTTAACSGTATTTTACATGGTTTCAATACAAAAAATTACAGTAACCTTTGAAATCTGACAAGAACCTCAAACTTATGCTTTTTTAACCGGTATTTGGCAGTGGAAAGGACCTTTGATCGGCTTTTAACCAGCTCGAAATGTCGGAAAGATTATTTGAAAAGATAATGAAAAAAACTTATCACAATTTTCATCTAAAGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4706</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>102110</contig_pos>
        <strand>+</strand>
        <context>CCCAAGTTCG[G/T]ATTTCRTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCG</left_flank>
        <right_flank>ATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTG</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGGTTTTTAGCAATACAAAAAACAGCAATTCGAACGCAGAAAAGTACAACGCGAGCAAAACAAGGCACTGTTGAGAGGCGGCGAACTGAATGGCAACCTCGAATTGTTATTGTGCACCTGGAAAACAGTAGCGCGCCTTTGCATAGACACTCTTGCCGCGTCATACAGAAGGCCCACTGAAGAGGTCACTCGAACGACACTGTGTAGAGATGGCCCCATGTAACGATGAGGGGCCAAAAACAACTACAACGTAGTCAGCACGCTGTGTTAAAATAATAGTTATTGATTGCAACCGGATCAAACTAGCTAGGAGAACGATAGACGACCCCGCCGTAACACAGAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAG</canonical>
            <polymorphic>ACGGTTTTTAGCAATACAAAAAACAGCAATTCGAACGCAGAAAAGTACAACGCGAGCAAAACAAGGCACTGTTGAGAGGCGGCGAACTGAATGGCAACCTCGAATTGTTATTGTGCACCTGGAAAACAGTAGCGCGCCTTTGCATAGACACTCTTGCCGCGTCATACAGAAGGCCCACTGAAGAGGTCACTCGAACGACACTGTGTAGAGATGGCCCCATGTAACGATGAGGGGCCAAAAACAACTACAACGTAGTCAGCACGCTGTGTTAAAATAATAGTTATTGATTGCAACCGGATCAAACTAGCTAGGAGAACGATAGACGACCCCGCCGTAACACAGAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGKATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGTGCCCCATAATTAGAC</pcr_primer_p1>
		<pcr_primer_p2>AAGCTTGTGTTTTCCAAGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTT</canonical_amplicon>
		<polymorphic_amplicon>GAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGKATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4707</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>102124</contig_pos>
        <strand></strand>
        <context>TCRTTTTTTT[T/A]ATGTYTGTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTT</left_flank>
        <right_flank>ATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACAAAAAACAGCAATTCGAACGCAGAAAAGTACAACGCGAGCAAAACAAGGCACTGTTGAGAGGCGGCGAACTGAATGGCAACCTCGAATTGTTATTGTGCACCTGGAAAACAGTAGCGCGCCTTTGCATAGACACTCTTGCCGCGTCATACAGAAGGCCCACTGAAGAGGTCACTCGAACGACACTGTGTAGAGATGGCCCCATGTAACGATGAGGGGCCAAAAACAACTACAACGTAGTCAGCACGCTGTGTTAAAATAATAGTTATTGATTGCAACCGGATCAAACTAGCTAGGAGAACGATAGACGACCCCGCCGTAACACAGAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAG</canonical>
            <polymorphic>TACAAAAAACAGCAATTCGAACGCAGAAAAGTACAACGCGAGCAAAACAAGGCACTGTTGAGAGGCGGCGAACTGAATGGCAACCTCGAATTGTTATTGTGCACCTGGAAAACAGTAGCGCGCCTTTGCATAGACACTCTTGCCGCGTCATACAGAAGGCCCACTGAAGAGGTCACTCGAACGACACTGTGTAGAGATGGCCCCATGTAACGATGAGGGGCCAAAAACAACTACAACGTAGTCAGCACGCTGTGTTAAAATAATAGTTATTGATTGCAACCGGATCAAACTAGCTAGGAGAACGATAGACGACCCCGCCGTAACACAGAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTWATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTGTTCCATTTACATATTAGT</pcr_primer_p1>
		<pcr_primer_p2>CTTCCTCACCATGATTATATCG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAG</canonical_amplicon>
		<polymorphic_amplicon>CGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTWATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4708</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>102129</contig_pos>
        <strand></strand>
        <context>TTTTTWATGT[T/C]TGTAAACGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGT</left_flank>
        <right_flank>TGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACAGCAATTCGAACGCAGAAAAGTACAACGCGAGCAAAACAAGGCACTGTTGAGAGGCGGCGAACTGAATGGCAACCTCGAATTGTTATTGTGCACCTGGAAAACAGTAGCGCGCCTTTGCATAGACACTCTTGCCGCGTCATACAGAAGGCCCACTGAAGAGGTCACTCGAACGACACTGTGTAGAGATGGCCCCATGTAACGATGAGGGGCCAAAAACAACTACAACGTAGTCAGCACGCTGTGTTAAAATAATAGTTATTGATTGCAACCGGATCAAACTAGCTAGGAGAACGATAGACGACCCCGCCGTAACACAGAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGT</canonical>
            <polymorphic>AAAACAGCAATTCGAACGCAGAAAAGTACAACGCGAGCAAAACAAGGCACTGTTGAGAGGCGGCGAACTGAATGGCAACCTCGAATTGTTATTGTGCACCTGGAAAACAGTAGCGCGCCTTTGCATAGACACTCTTGCCGCGTCATACAGAAGGCCCACTGAAGAGGTCACTCGAACGACACTGTGTAGAGATGGCCCCATGTAACGATGAGGGGCCAAAAACAACTACAACGTAGTCAGCACGCTGTGTTAAAATAATAGTTATTGATTGCAACCGGATCAAACTAGCTAGGAGAACGATAGACGACCCCGCCGTAACACAGAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTYTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTGTTCCATTTACATATTAGT</pcr_primer_p1>
		<pcr_primer_p2>CTTCCTCACCATGATTATATCG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAG</canonical_amplicon>
		<polymorphic_amplicon>CGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTYTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4709</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>102160</contig_pos>
        <strand></strand>
        <context>GCGATTGTTT[G/A]ATARAAATRT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTT</left_flank>
        <right_flank>ATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCGAGCAAAACAAGGCACTGTTGAGAGGCGGCGAACTGAATGGCAACCTCGAATTGTTATTGTGCACCTGGAAAACAGTAGCGCGCCTTTGCATAGACACTCTTGCCGCGTCATACAGAAGGCCCACTGAAGAGGTCACTCGAACGACACTGTGTAGAGATGGCCCCATGTAACGATGAGGGGCCAAAAACAACTACAACGTAGTCAGCACGCTGTGTTAAAATAATAGTTATTGATTGCAACCGGATCAAACTAGCTAGGAGAACGATAGACGACCCCGCCGTAACACAGAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTT</canonical>
            <polymorphic>CGCGAGCAAAACAAGGCACTGTTGAGAGGCGGCGAACTGAATGGCAACCTCGAATTGTTATTGTGCACCTGGAAAACAGTAGCGCGCCTTTGCATAGACACTCTTGCCGCGTCATACAGAAGGCCCACTGAAGAGGTCACTCGAACGACACTGTGTAGAGATGGCCCCATGTAACGATGAGGGGCCAAAAACAACTACAACGTAGTCAGCACGCTGTGTTAAAATAATAGTTATTGATTGCAACCGGATCAAACTAGCTAGGAGAACGATAGACGACCCCGCCGTAACACAGAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTRATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTGTTCCATTTACATATTAGT</pcr_primer_p1>
		<pcr_primer_p2>CTTCCTCACCATGATTATATCG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAG</canonical_amplicon>
		<polymorphic_amplicon>CGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTRATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4710</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>102164</contig_pos>
        <strand>+</strand>
        <context>TTGTTTRATA[A/G]AAATRTAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATA</left_flank>
        <right_flank>AAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCAAAACAAGGCACTGTTGAGAGGCGGCGAACTGAATGGCAACCTCGAATTGTTATTGTGCACCTGGAAAACAGTAGCGCGCCTTTGCATAGACACTCTTGCCGCGTCATACAGAAGGCCCACTGAAGAGGTCACTCGAACGACACTGTGTAGAGATGGCCCCATGTAACGATGAGGGGCCAAAAACAACTACAACGTAGTCAGCACGCTGTGTTAAAATAATAGTTATTGATTGCAACCGGATCAAACTAGCTAGGAGAACGATAGACGACCCCGCCGTAACACAGAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGA</canonical>
            <polymorphic>AGCAAAACAAGGCACTGTTGAGAGGCGGCGAACTGAATGGCAACCTCGAATTGTTATTGTGCACCTGGAAAACAGTAGCGCGCCTTTGCATAGACACTCTTGCCGCGTCATACAGAAGGCCCACTGAAGAGGTCACTCGAACGACACTGTGTAGAGATGGCCCCATGTAACGATGAGGGGCCAAAAACAACTACAACGTAGTCAGCACGCTGTGTTAAAATAATAGTTATTGATTGCAACCGGATCAAACTAGCTAGGAGAACGATAGACGACCCCGCCGTAACACAGAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATARAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTGTTCCATTTACATATTAGT</pcr_primer_p1>
		<pcr_primer_p2>CTTCCTCACCATGATTATATCG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAG</canonical_amplicon>
		<polymorphic_amplicon>CGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATARAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4711</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>102169</contig_pos>
        <strand>+</strand>
        <context>TRATARAAAT[A/G]TAATTTTCWG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAAT</left_flank>
        <right_flank>TAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAAGGCACTGTTGAGAGGCGGCGAACTGAATGGCAACCTCGAATTGTTATTGTGCACCTGGAAAACAGTAGCGCGCCTTTGCATAGACACTCTTGCCGCGTCATACAGAAGGCCCACTGAAGAGGTCACTCGAACGACACTGTGTAGAGATGGCCCCATGTAACGATGAGGGGCCAAAAACAACTACAACGTAGTCAGCACGCTGTGTTAAAATAATAGTTATTGATTGCAACCGGATCAAACTAGCTAGGAGAACGATAGACGACCCCGCCGTAACACAGAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTA</canonical>
            <polymorphic>AACAAGGCACTGTTGAGAGGCGGCGAACTGAATGGCAACCTCGAATTGTTATTGTGCACCTGGAAAACAGTAGCGCGCCTTTGCATAGACACTCTTGCCGCGTCATACAGAAGGCCCACTGAAGAGGTCACTCGAACGACACTGTGTAGAGATGGCCCCATGTAACGATGAGGGGCCAAAAACAACTACAACGTAGTCAGCACGCTGTGTTAAAATAATAGTTATTGATTGCAACCGGATCAAACTAGCTAGGAGAACGATAGACGACCCCGCCGTAACACAGAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATRTAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTGTTCCATTTACATATTAGT</pcr_primer_p1>
		<pcr_primer_p2>CTTCCTCACCATGATTATATCG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAG</canonical_amplicon>
		<polymorphic_amplicon>CGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATRTAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4712</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>102178</contig_pos>
        <strand>+</strand>
        <context>TRTAATTTTC[A/T]GGCGACTTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTC</left_flank>
        <right_flank>GGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTTGAGAGGCGGCGAACTGAATGGCAACCTCGAATTGTTATTGTGCACCTGGAAAACAGTAGCGCGCCTTTGCATAGACACTCTTGCCGCGTCATACAGAAGGCCCACTGAAGAGGTCACTCGAACGACACTGTGTAGAGATGGCCCCATGTAACGATGAGGGGCCAAAAACAACTACAACGTAGTCAGCACGCTGTGTTAAAATAATAGTTATTGATTGCAACCGGATCAAACTAGCTAGGAGAACGATAGACGACCCCGCCGTAACACAGAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTT</canonical>
            <polymorphic>CTGTTGAGAGGCGGCGAACTGAATGGCAACCTCGAATTGTTATTGTGCACCTGGAAAACAGTAGCGCGCCTTTGCATAGACACTCTTGCCGCGTCATACAGAAGGCCCACTGAAGAGGTCACTCGAACGACACTGTGTAGAGATGGCCCCATGTAACGATGAGGGGCCAAAAACAACTACAACGTAGTCAGCACGCTGTGTTAAAATAATAGTTATTGATTGCAACCGGATCAAACTAGCTAGGAGAACGATAGACGACCCCGCCGTAACACAGAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCWGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTGTTCCATTTACATATTAGT</pcr_primer_p1>
		<pcr_primer_p2>CTTCCTCACCATGATTATATCG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAG</canonical_amplicon>
		<polymorphic_amplicon>CGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCWGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4713</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>102213</contig_pos>
        <strand>+</strand>
        <context>AACACCATCA[A/T]TACATATTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCA</left_flank>
        <right_flank>TACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGTTATTGTGCACCTGGAAAACAGTAGCGCGCCTTTGCATAGACACTCTTGCCGCGTCATACAGAAGGCCCACTGAAGAGGTCACTCGAACGACACTGTGTAGAGATGGCCCCATGTAACGATGAGGGGCCAAAAACAACTACAACGTAGTCAGCACGCTGTGTTAAAATAATAGTTATTGATTGCAACCGGATCAAACTAGCTAGGAGAACGATAGACGACCCCGCCGTAACACAGAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGTGAGTTCGCAACTTCTAGCTAATTTCA</canonical>
            <polymorphic>ATTGTTATTGTGCACCTGGAAAACAGTAGCGCGCCTTTGCATAGACACTCTTGCCGCGTCATACAGAAGGCCCACTGAAGAGGTCACTCGAACGACACTGTGTAGAGATGGCCCCATGTAACGATGAGGGGCCAAAAACAACTACAACGTAGTCAGCACGCTGTGTTAAAATAATAGTTATTGATTGCAACCGGATCAAACTAGCTAGGAGAACGATAGACGACCCCGCCGTAACACAGAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAWTACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGTGAGTTCGCAACTTCTAGCTAATTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTGTTCCATTTACATATTAGT</pcr_primer_p1>
		<pcr_primer_p2>CTTCCTCACCATGATTATATCG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAG</canonical_amplicon>
		<polymorphic_amplicon>CGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAWTACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4714</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>102246</contig_pos>
        <strand>+</strand>
        <context>TAAATACATT[G/T]GACKCAGCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATT</left_flank>
        <right_flank>GACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTTGCATAGACACTCTTGCCGCGTCATACAGAAGGCCCACTGAAGAGGTCACTCGAACGACACTGTGTAGAGATGGCCCCATGTAACGATGAGGGGCCAAAAACAACTACAACGTAGTCAGCACGCTGTGTTAAAATAATAGTTATTGATTGCAACCGGATCAAACTAGCTAGGAGAACGATAGACGACCCCGCCGTAACACAGAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGTGAGTTCGCAACTTCTAGCTAATTTCAATCCCTTTATTCAATTTTCAGATAAAGTTCGTG</canonical>
            <polymorphic>CCTTTGCATAGACACTCTTGCCGCGTCATACAGAAGGCCCACTGAAGAGGTCACTCGAACGACACTGTGTAGAGATGGCCCCATGTAACGATGAGGGGCCAAAAACAACTACAACGTAGTCAGCACGCTGTGTTAAAATAATAGTTATTGATTGCAACCGGATCAAACTAGCTAGGAGAACGATAGACGACCCCGCCGTAACACAGAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTKGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGTGAGTTCGCAACTTCTAGCTAATTTCAATCCCTTTATTCAATTTTCAGATAAAGTTCGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTGTTCCATTTACATATTAGT</pcr_primer_p1>
		<pcr_primer_p2>CTTCCTCACCATGATTATATCG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAG</canonical_amplicon>
		<polymorphic_amplicon>CGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTKGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4715</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>102250</contig_pos>
        <strand>+</strand>
        <context>TACATTKGAC[G/T]CAGCAGTATA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGAC</left_flank>
        <right_flank>CAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCATAGACACTCTTGCCGCGTCATACAGAAGGCCCACTGAAGAGGTCACTCGAACGACACTGTGTAGAGATGGCCCCATGTAACGATGAGGGGCCAAAAACAACTACAACGTAGTCAGCACGCTGTGTTAAAATAATAGTTATTGATTGCAACCGGATCAAACTAGCTAGGAGAACGATAGACGACCCCGCCGTAACACAGAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGTGAGTTCGCAACTTCTAGCTAATTTCAATCCCTTTATTCAATTTTCAGATAAAGTTCGTGGAGT</canonical>
            <polymorphic>TGCATAGACACTCTTGCCGCGTCATACAGAAGGCCCACTGAAGAGGTCACTCGAACGACACTGTGTAGAGATGGCCCCATGTAACGATGAGGGGCCAAAAACAACTACAACGTAGTCAGCACGCTGTGTTAAAATAATAGTTATTGATTGCAACCGGATCAAACTAGCTAGGAGAACGATAGACGACCCCGCCGTAACACAGAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACKCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGTGAGTTCGCAACTTCTAGCTAATTTCAATCCCTTTATTCAATTTTCAGATAAAGTTCGTGGAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>327 275 162 113 96 19 8</canonical_bands>
                <polymorphic_bands>440 275 162 96 19 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>327 291 165 113 96 8</canonical_bands>
                <polymorphic_bands>440 291 165 96 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGTGTTCCATTTACATATTAGT</pcr_primer_p1>
		<pcr_primer_p2>CTTCCTCACCATGATTATATCG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAG</canonical_amplicon>
		<polymorphic_amplicon>CGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACKCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4716</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>102323</contig_pos>
        <strand>+</strand>
        <context>CGAAATCAAA[G/T]TTTTTTACAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAA</left_flank>
        <right_flank>TTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCCCATGTAACGATGAGGGGCCAAAAACAACTACAACGTAGTCAGCACGCTGTGTTAAAATAATAGTTATTGATTGCAACCGGATCAAACTAGCTAGGAGAACGATAGACGACCCCGCCGTAACACAGAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGTGAGTTCGCAACTTCTAGCTAATTTCAATCCCTTTATTCAATTTTCAGATAAAGTTCGTGGAGTGTTCGGCTTAGGTGGATTCTGTGTTGTTTACGTGATCAGAATGGTCAACAATTGACTGCGAAAGTCATTTCGA</canonical>
            <polymorphic>GCCCCATGTAACGATGAGGGGCCAAAAACAACTACAACGTAGTCAGCACGCTGTGTTAAAATAATAGTTATTGATTGCAACCGGATCAAACTAGCTAGGAGAACGATAGACGACCCCGCCGTAACACAGAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAKTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGTGAGTTCGCAACTTCTAGCTAATTTCAATCCCTTTATTCAATTTTCAGATAAAGTTCGTGGAGTGTTCGGCTTAGGTGGATTCTGTGTTGTTTACGTGATCAGAATGGTCAACAATTGACTGCGAAAGTCATTTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATCATAGAATCAAGACCAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGTGTTTTCTTTTATTCGATTTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACA</canonical_amplicon>
		<polymorphic_amplicon>AGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAKTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4717</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>102338</contig_pos>
        <strand>+</strand>
        <context>TTACAAAACT[A/G]AAYTTTTTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACT</left_flank>
        <right_flank>AATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGGGGCCAAAAACAACTACAACGTAGTCAGCACGCTGTGTTAAAATAATAGTTATTGATTGCAACCGGATCAAACTAGCTAGGAGAACGATAGACGACCCCGCCGTAACACAGAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGTGAGTTCGCAACTTCTAGCTAATTTCAATCCCTTTATTCAATTTTCAGATAAAGTTCGTGGAGTGTTCGGCTTAGGTGGATTCTGTGTTGTTTACGTGATCAGAATGGTCAACAATTGACTGCGAAAGTCATTTCGACTAGACCATACTCAA</canonical>
            <polymorphic>GAGGGGCCAAAAACAACTACAACGTAGTCAGCACGCTGTGTTAAAATAATAGTTATTGATTGCAACCGGATCAAACTAGCTAGGAGAACGATAGACGACCCCGCCGTAACACAGAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTRAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGTGAGTTCGCAACTTCTAGCTAATTTCAATCCCTTTATTCAATTTTCAGATAAAGTTCGTGGAGTGTTCGGCTTAGGTGGATTCTGTGTTGTTTACGTGATCAGAATGGTCAACAATTGACTGCGAAAGTCATTTCGACTAGACCATACTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATCATAGAATCAAGACCAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGTGTTTTCTTTTATTCGATTTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACA</canonical_amplicon>
		<polymorphic_amplicon>AGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTRAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4718</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>102341</contig_pos>
        <strand>+</strand>
        <context>CAAAACTRAA[C/T]TTTTTGTGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAA</left_flank>
        <right_flank>TTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGCCAAAAACAACTACAACGTAGTCAGCACGCTGTGTTAAAATAATAGTTATTGATTGCAACCGGATCAAACTAGCTAGGAGAACGATAGACGACCCCGCCGTAACACAGAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGTGAGTTCGCAACTTCTAGCTAATTTCAATCCCTTTATTCAATTTTCAGATAAAGTTCGTGGAGTGTTCGGCTTAGGTGGATTCTGTGTTGTTTACGTGATCAGAATGGTCAACAATTGACTGCGAAAGTCATTTCGACTAGACCATACTCAACTC</canonical>
            <polymorphic>GGGCCAAAAACAACTACAACGTAGTCAGCACGCTGTGTTAAAATAATAGTTATTGATTGCAACCGGATCAAACTAGCTAGGAGAACGATAGACGACCCCGCCGTAACACAGAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAAYTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGTGAGTTCGCAACTTCTAGCTAATTTCAATCCCTTTATTCAATTTTCAGATAAAGTTCGTGGAGTGTTCGGCTTAGGTGGATTCTGTGTTGTTTACGTGATCAGAATGGTCAACAATTGACTGCGAAAGTCATTTCGACTAGACCATACTCAACTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>305 178 168 122 74 63 42 29 19</canonical_bands>
                <polymorphic_bands>305 231 178 122 74 42 29 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATCATAGAATCAAGACCAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGTGTTTTCTTTTATTCGATTTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACA</canonical_amplicon>
		<polymorphic_amplicon>AGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAAYTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4719</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>102374</contig_pos>
        <strand>+</strand>
        <context>GGGCATAAAA[C/T]GTTTTTAACG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAA</left_flank>
        <right_flank>GTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGTTAAAATAATAGTTATTGATTGCAACCGGATCAAACTAGCTAGGAGAACGATAGACGACCCCGCCGTAACACAGAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGTGAGTTCGCAACTTCTAGCTAATTTCAATCCCTTTATTCAATTTTCAGATAAAGTTCGTGGAGTGTTCGGCTTAGGTGGATTCTGTGTTGTTTACGTGATCAGAATGGTCAACAATTGACTGCGAAAGTCATTTCGACTAGACCATACTCAACTCAGCGTGAGATGAAAGTAAGACCATTTTTCCTGA</canonical>
            <polymorphic>TGTGTTAAAATAATAGTTATTGATTGCAACCGGATCAAACTAGCTAGGAGAACGATAGACGACCCCGCCGTAACACAGAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAAYGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGTGAGTTCGCAACTTCTAGCTAATTTCAATCCCTTTATTCAATTTTCAGATAAAGTTCGTGGAGTGTTCGGCTTAGGTGGATTCTGTGTTGTTTACGTGATCAGAATGGTCAACAATTGACTGCGAAAGTCATTTCGACTAGACCATACTCAACTCAGCGTGAGATGAAAGTAAGACCATTTTTCCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATCATAGAATCAAGACCAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGTGTTTTCTTTTATTCGATTTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACA</canonical_amplicon>
		<polymorphic_amplicon>AGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAAYGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4720</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>102414</contig_pos>
        <strand>+</strand>
        <context>TTGATAGACT[G/T]AAAAATCCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACT</left_flank>
        <right_flank>AAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGCTAGGAGAACGATAGACGACCCCGCCGTAACACAGAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGTGAGTTCGCAACTTCTAGCTAATTTCAATCCCTTTATTCAATTTTCAGATAAAGTTCGTGGAGTGTTCGGCTTAGGTGGATTCTGTGTTGTTTACGTGATCAGAATGGTCAACAATTGACTGCGAAAGTCATTTCGACTAGACCATACTCAACTCAGCGTGAGATGAAAGTAAGACCATTTTTCCTGAAACAATGATCAGATGAAATAATTGTTATACAGGCGCTCCG</canonical>
            <polymorphic>TAGCTAGGAGAACGATAGACGACCCCGCCGTAACACAGAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTKAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGTGAGTTCGCAACTTCTAGCTAATTTCAATCCCTTTATTCAATTTTCAGATAAAGTTCGTGGAGTGTTCGGCTTAGGTGGATTCTGTGTTGTTTACGTGATCAGAATGGTCAACAATTGACTGCGAAAGTCATTTCGACTAGACCATACTCAACTCAGCGTGAGATGAAAGTAAGACCATTTTTCCTGAAACAATGATCAGATGAAATAATTGTTATACAGGCGCTCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>441 306 159 60 34</canonical_bands>
                <polymorphic_bands>441 306 159 94</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATCATAGAATCAAGACCAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGTGTTTTCTTTTATTCGATTTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACA</canonical_amplicon>
		<polymorphic_amplicon>AGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTKAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4721</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>102475</contig_pos>
        <strand>+</strand>
        <context>CCAGTTCATT[A/G]AACTCAACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATT</left_flank>
        <right_flank>AACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGTGAGTTCGCAACTTCTAGCTAATTTCAATCCCTTTATTCAATTTTCAGATAAAGTTCGTGGAGTGTTCGGCTTAGGTGGATTCTGTGTTGTTTACGTGATCAGAATGGTCAACAATTGACTGCGAAAGTCATTTCGACTAGACCATACTCAACTCAGCGTGAGATGAAAGTAAGACCATTTTTCCTGAAACAATGATCAGATGAAATAATTGTTATACAGGCGCTCCGTAAAATTCGAGAGAACCCACACAATAATTTATTGTTGCTGTATTCAGTTGGTATGTTGAAG</canonical>
            <polymorphic>GACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTRAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGTGAGTTCGCAACTTCTAGCTAATTTCAATCCCTTTATTCAATTTTCAGATAAAGTTCGTGGAGTGTTCGGCTTAGGTGGATTCTGTGTTGTTTACGTGATCAGAATGGTCAACAATTGACTGCGAAAGTCATTTCGACTAGACCATACTCAACTCAGCGTGAGATGAAAGTAAGACCATTTTTCCTGAAACAATGATCAGATGAAATAATTGTTATACAGGCGCTCCGTAAAATTCGAGAGAACCCACACAATAATTTATTGTTGCTGTATTCAGTTGGTATGTTGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 245 159 60 34</canonical_bands>
                <polymorphic_bands>562 245 159 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGAAACGCAAAATTGATAGA</pcr_primer_p1>
		<pcr_primer_p2>TCATAGTCATATCCTGGTGATTT</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>GTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGA</canonical_amplicon>
		<polymorphic_amplicon>GTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTRAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4722</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>102516</contig_pos>
        <strand>+</strand>
        <context>ACTATTCGTT[G/T]CAGCAGAGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTT</left_flank>
        <right_flank>CAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGTGAGTTCGCAACTTCTAGCTAATTTCAATCCCTTTATTCAATTTTCAGATAAAGTTCGTGGAGTGTTCGGCTTAGGTGGATTCTGTGTTGTTTACGTGATCAGAATGGTCAACAATTGACTGCGAAAGTCATTTCGACTAGACCATACTCAACTCAGCGTGAGATGAAAGTAAGACCATTTTTCCTGAAACAATGATCAGATGAAATAATTGTTATACAGGCGCTCCGTAAAATTCGAGAGAACCCACACAATAATTTATTGTTGCTGTATTCAGTTGGTATGTTGAAGAATCCACCGCCAGGATATACAGACGAAGTTATTATAACAGA</canonical>
            <polymorphic>GCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTKCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGTGAGTTCGCAACTTCTAGCTAATTTCAATCCCTTTATTCAATTTTCAGATAAAGTTCGTGGAGTGTTCGGCTTAGGTGGATTCTGTGTTGTTTACGTGATCAGAATGGTCAACAATTGACTGCGAAAGTCATTTCGACTAGACCATACTCAACTCAGCGTGAGATGAAAGTAAGACCATTTTTCCTGAAACAATGATCAGATGAAATAATTGTTATACAGGCGCTCCGTAAAATTCGAGAGAACCCACACAATAATTTATTGTTGCTGTATTCAGTTGGTATGTTGAAGAATCCACCGCCAGGATATACAGACGAAGTTATTATAACAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACCGTTTTTCTTGTGCTATC</pcr_primer_p1>
		<pcr_primer_p2>ACATTCTTCAAATGTTCGTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGT</canonical_amplicon>
		<polymorphic_amplicon>ATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTKCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4723</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>102551</contig_pos>
        <strand>+</strand>
        <context>AAGAAAAATA[A/C]ATTRCCTTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATA</left_flank>
        <right_flank>ATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGTGAGTTCGCAACTTCTAGCTAATTTCAATCCCTTTATTCAATTTTCAGATAAAGTTCGTGGAGTGTTCGGCTTAGGTGGATTCTGTGTTGTTTACGTGATCAGAATGGTCAACAATTGACTGCGAAAGTCATTTCGACTAGACCATACTCAACTCAGCGTGAGATGAAAGTAAGACCATTTTTCCTGAAACAATGATCAGATGAAATAATTGTTATACAGGCGCTCCGTAAAATTCGAGAGAACCCACACAATAATTTATTGTTGCTGTATTCAGTTGGTATGTTGAAGAATCCACCGCCAGGATATACAGACGAAGTTATTATAACAGAAGCATGCGGACCATCTATCAGAGAAATTATGACAA</canonical>
            <polymorphic>CTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATAMATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGTGAGTTCGCAACTTCTAGCTAATTTCAATCCCTTTATTCAATTTTCAGATAAAGTTCGTGGAGTGTTCGGCTTAGGTGGATTCTGTGTTGTTTACGTGATCAGAATGGTCAACAATTGACTGCGAAAGTCATTTCGACTAGACCATACTCAACTCAGCGTGAGATGAAAGTAAGACCATTTTTCCTGAAACAATGATCAGATGAAATAATTGTTATACAGGCGCTCCGTAAAATTCGAGAGAACCCACACAATAATTTATTGTTGCTGTATTCAGTTGGTATGTTGAAGAATCCACCGCCAGGATATACAGACGAAGTTATTATAACAGAAGCATGCGGACCATCTATCAGAGAAATTATGACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAACAAATCGAATAAAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAATAAAGGGATTGAAATTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGTGAGTTCGCAACTTCTAGCTAATTTCAATCCCTTTATTCAA</canonical_amplicon>
		<polymorphic_amplicon>CTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATAMATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGTGAGTTCGCAACTTCTAGCTAATTTCAATCCCTTTATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4724</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>102555</contig_pos>
        <strand>+</strand>
        <context>AAAATAMATT[A/G]CCTTATGCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATT</left_flank>
        <right_flank>CCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGTGAGTTCGCAACTTCTAGCTAATTTCAATCCCTTTATTCAATTTTCAGATAAAGTTCGTGGAGTGTTCGGCTTAGGTGGATTCTGTGTTGTTTACGTGATCAGAATGGTCAACAATTGACTGCGAAAGTCATTTCGACTAGACCATACTCAACTCAGCGTGAGATGAAAGTAAGACCATTTTTCCTGAAACAATGATCAGATGAAATAATTGTTATACAGGCGCTCCGTAAAATTCGAGAGAACCCACACAATAATTTATTGTTGCTGTATTCAGTTGGTATGTTGAAGAATCCACCGCCAGGATATACAGACGAAGTTATTATAACAGAAGCATGCGGACCATCTATCAGAGAAATTATGACAAGTAA</canonical>
            <polymorphic>CGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTRCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGTGAGTTCGCAACTTCTAGCTAATTTCAATCCCTTTATTCAATTTTCAGATAAAGTTCGTGGAGTGTTCGGCTTAGGTGGATTCTGTGTTGTTTACGTGATCAGAATGGTCAACAATTGACTGCGAAAGTCATTTCGACTAGACCATACTCAACTCAGCGTGAGATGAAAGTAAGACCATTTTTCCTGAAACAATGATCAGATGAAATAATTGTTATACAGGCGCTCCGTAAAATTCGAGAGAACCCACACAATAATTTATTGTTGCTGTATTCAGTTGGTATGTTGAAGAATCCACCGCCAGGATATACAGACGAAGTTATTATAACAGAAGCATGCGGACCATCTATCAGAGAAATTATGACAAGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAACAAATCGAATAAAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAATAAAGGGATTGAAATTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGTGAGTTCGCAACTTCTAGCTAATTTCAATCCCTTTATTCAA</canonical_amplicon>
		<polymorphic_amplicon>CTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTRCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGTGAGTTCGCAACTTCTAGCTAATTTCAATCCCTTTATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4725</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>102572</contig_pos>
        <strand>+</strand>
        <context>GCCAATAGCT[G/T]AGAGGCAGCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCT</left_flank>
        <right_flank>AGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGTGAGTTCGCAACTTCTAGCTAATTTCAATCCCTTTATTCAATTTTCAGATAAAGTTCGTGGAGTGTTCGGCTTAGGTGGATTCTGTGTTGTTTACGTGATCAGAATGGTCAACAATTGACTGCGAAAGTCATTTCGACTAGACCATACTCAACTCAGCGTGAGATGAAAGTAAGACCATTTTTCCTGAAACAATGATCAGATGAAATAATTGTTATACAGGCGCTCCGTAAAATTCGAGAGAACCCACACAATAATTTATTGTTGCTGTATTCAGTTGGTATGTTGAAGAATCCACCGCCAGGATATACAGACGAAGTTATTATAACAGAAGCATGCGGACCATCTATCAGAGAAATTATGACAAGTAAGTTTGGTACAATGACTT</canonical>
            <polymorphic>TCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTKAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGTGAGTTCGCAACTTCTAGCTAATTTCAATCCCTTTATTCAATTTTCAGATAAAGTTCGTGGAGTGTTCGGCTTAGGTGGATTCTGTGTTGTTTACGTGATCAGAATGGTCAACAATTGACTGCGAAAGTCATTTCGACTAGACCATACTCAACTCAGCGTGAGATGAAAGTAAGACCATTTTTCCTGAAACAATGATCAGATGAAATAATTGTTATACAGGCGCTCCGTAAAATTCGAGAGAACCCACACAATAATTTATTGTTGCTGTATTCAGTTGGTATGTTGAAGAATCCACCGCCAGGATATACAGACGAAGTTATTATAACAGAAGCATGCGGACCATCTATCAGAGAAATTATGACAAGTAAGTTTGGTACAATGACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAACAAATCGAATAAAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAATAAAGGGATTGAAATTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGTGAGTTCGCAACTTCTAGCTAATTTCAATCCCTTTATTCAA</canonical_amplicon>
		<polymorphic_amplicon>CTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTKAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATGACTATGAGCCAGTTGACCTGGATAAAAAAGCTCATCCCGCTGTTCTGAAGCTACGAACATTTGAAGAATGTGAGTTCGCAACTTCTAGCTAATTTCAATCCCTTTATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4726</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>103845</contig_pos>
        <strand>+</strand>
        <context>CGACTTCCTC[A/G]ATGATTACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTC</left_flank>
        <right_flank>ATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGATTACTTGATGGAATTTATGCGTGACGACACGGACCTTCCACTGTTCGAGTTCCTCAAATTCGCTCTCAAGTTTGATCCTGCCATCATTTGAGAAAGTGATCGAGCACGAATTCCTCACAAACTTCTAAGCTGAGTTTGTTCGTGAATTCGCTCCATTCTCCATTTTTTAATGCATTTTTTAAAAAACTTCACCTGGTTTTTTTGTTACCCGTAATTAATTGTGTTCAACACATTTCTATCTGAAACCCAGTCTACCCAATTCACCGTGTTACTTTGTGATCCTGTTCTTTTCTTGAAATTTTATTAGGATCATTTCCATTCACTTTAAAAGCACACGACAATTTTTAAGCATCACGACACTTTTATTTGAAATTCACTTTCTTGAATAATAAACGAATTTGATGCTTACACAGCTCTAGTTTTGTTTCATTGATTCTCCGGCGATAAAGGT</canonical>
            <polymorphic>GCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCRATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGATTACTTGATGGAATTTATGCGTGACGACACGGACCTTCCACTGTTCGAGTTCCTCAAATTCGCTCTCAAGTTTGATCCTGCCATCATTTGAGAAAGTGATCGAGCACGAATTCCTCACAAACTTCTAAGCTGAGTTTGTTCGTGAATTCGCTCCATTCTCCATTTTTTAATGCATTTTTTAAAAAACTTCACCTGGTTTTTTTGTTACCCGTAATTAATTGTGTTCAACACATTTCTATCTGAAACCCAGTCTACCCAATTCACCGTGTTACTTTGTGATCCTGTTCTTTTCTTGAAATTTTATTAGGATCATTTCCATTCACTTTAAAAGCACACGACAATTTTTAAGCATCACGACACTTTTATTTGAAATTCACTTTCTTGAATAATAAACGAATTTGATGCTTACACAGCTCTAGTTTTGTTTCATTGATTCTCCGGCGATAAAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTCTTGGAATGTTGTTTTCA</pcr_primer_p1>
		<pcr_primer_p2>AAACTCAGCTTAGAAGTTTGTGA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGATTACTTGATGGAATTTATGCGTGACGACACGGACCTTCCACTGTTCGAGTTCCTCAAATTCGCTCTCAAGTTTGATCCTGCCATCATTTGAGAAAGTGATCGAGCACGAATTCCTCACAAACTTCTAAGCTGAGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCRATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGATTACTTGATGGAATTTATGCGTGACGACACGGACCTTCCACTGTTCGAGTTCCTCAAATTCGCTCTCAAGTTTGATCCTGCCATCATTTGAGAAAGTGATCGAGCACGAATTCCTCACAAACTTCTAAGCTGAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4727</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>103768</contig_pos>
        <strand>+</strand>
        <context>AAGCAAAGAG[A/G]GTAAGAAGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAG</left_flank>
        <right_flank>GTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGATTACTTGATGGAATTTATGCGTGACGACACGGACCTTCCACTGTTCGAGTTCCTCAAATTCGCTCTCAAGTTTGATCCTGCCATCATTTGAGAAAGTGATCGAGCACGAATTCCTCACAAACTTCTAAGCTGAGTTTGTTCGTGAATTCGCTCCATTCTCCATTTTTTAATGCATTTTTTAAAAAACTTCACCTGGTTTTTTTGTTACCCGTAATTAATTGTGTTCAACACATTTCTATCTGAAACCCAGTCTACCCAATTCACCGTGTTACTTTGTGATCCTGTTCTTTTCTTGAAATTTTATTAGGATCATTTCCATTCACTTTAAAAGCACACGACAATTTTTAAGCATCACGACACTTTTATTTGAAATT</canonical>
            <polymorphic>TTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGRGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGATTACTTGATGGAATTTATGCGTGACGACACGGACCTTCCACTGTTCGAGTTCCTCAAATTCGCTCTCAAGTTTGATCCTGCCATCATTTGAGAAAGTGATCGAGCACGAATTCCTCACAAACTTCTAAGCTGAGTTTGTTCGTGAATTCGCTCCATTCTCCATTTTTTAATGCATTTTTTAAAAAACTTCACCTGGTTTTTTTGTTACCCGTAATTAATTGTGTTCAACACATTTCTATCTGAAACCCAGTCTACCCAATTCACCGTGTTACTTTGTGATCCTGTTCTTTTCTTGAAATTTTATTAGGATCATTTCCATTCACTTTAAAAGCACACGACAATTTTTAAGCATCACGACACTTTTATTTGAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCAGCTTGAAATACAACAGTC</pcr_primer_p1>
		<pcr_primer_p2>ACGCATAAATTCCATCAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGATTACTTGATGGAATTTATGCGT</canonical_amplicon>
		<polymorphic_amplicon>ACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGRGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGATTACTTGATGGAATTTATGCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4728</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>103744</contig_pos>
        <strand>+</strand>
        <context>TCAAGAGAAA[C/T]GCTTGAAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAA</left_flank>
        <right_flank>GCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGATTACTTGATGGAATTTATGCGTGACGACACGGACCTTCCACTGTTCGAGTTCCTCAAATTCGCTCTCAAGTTTGATCCTGCCATCATTTGAGAAAGTGATCGAGCACGAATTCCTCACAAACTTCTAAGCTGAGTTTGTTCGTGAATTCGCTCCATTCTCCATTTTTTAATGCATTTTTTAAAAAACTTCACCTGGTTTTTTTGTTACCCGTAATTAATTGTGTTCAACACATTTCTATCTGAAACCCAGTCTACCCAATTCACCGTGTTACTTTGTGATCCTGTTCTTTTCTTGAAATTTTATTAGGATCATTTCCATTCACTTTAAAAGCACACGACAATTTTTAAGC</canonical>
            <polymorphic>TCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAAYGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGATTACTTGATGGAATTTATGCGTGACGACACGGACCTTCCACTGTTCGAGTTCCTCAAATTCGCTCTCAAGTTTGATCCTGCCATCATTTGAGAAAGTGATCGAGCACGAATTCCTCACAAACTTCTAAGCTGAGTTTGTTCGTGAATTCGCTCCATTCTCCATTTTTTAATGCATTTTTTAAAAAACTTCACCTGGTTTTTTTGTTACCCGTAATTAATTGTGTTCAACACATTTCTATCTGAAACCCAGTCTACCCAATTCACCGTGTTACTTTGTGATCCTGTTCTTTTCTTGAAATTTTATTAGGATCATTTCCATTCACTTTAAAAGCACACGACAATTTTTAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTTCCCTACAACAAAAAGAC</pcr_primer_p1>
		<pcr_primer_p2>CTGAAAACAACATTCCAAGAATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAG</canonical_amplicon>
		<polymorphic_amplicon>GTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAAYGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4729</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>103714</contig_pos>
        <strand>+</strand>
        <context>ATGATGATCT[C/T]CAGAATGAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCT</left_flank>
        <right_flank>CAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGATTACTTGATGGAATTTATGCGTGACGACACGGACCTTCCACTGTTCGAGTTCCTCAAATTCGCTCTCAAGTTTGATCCTGCCATCATTTGAGAAAGTGATCGAGCACGAATTCCTCACAAACTTCTAAGCTGAGTTTGTTCGTGAATTCGCTCCATTCTCCATTTTTTAATGCATTTTTTAAAAAACTTCACCTGGTTTTTTTGTTACCCGTAATTAATTGTGTTCAACACATTTCTATCTGAAACCCAGTCTACCCAATTCACCGTGTTACTTTGTGATCCTGTTCTTTTCTTGAAATTTTATTAGGATCATTTCCATT</canonical>
            <polymorphic>GTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTYCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGATTACTTGATGGAATTTATGCGTGACGACACGGACCTTCCACTGTTCGAGTTCCTCAAATTCGCTCTCAAGTTTGATCCTGCCATCATTTGAGAAAGTGATCGAGCACGAATTCCTCACAAACTTCTAAGCTGAGTTTGTTCGTGAATTCGCTCCATTCTCCATTTTTTAATGCATTTTTTAAAAAACTTCACCTGGTTTTTTTGTTACCCGTAATTAATTGTGTTCAACACATTTCTATCTGAAACCCAGTCTACCCAATTCACCGTGTTACTTTGTGATCCTGTTCTTTTCTTGAAATTTTATTAGGATCATTTCCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>320 179 158 99 90 79 57 18</canonical_bands>
                <polymorphic_bands>320 189 179 158 79 57 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTTCCCTACAACAAAAAGAC</pcr_primer_p1>
		<pcr_primer_p2>CTGAAAACAACATTCCAAGAATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAG</canonical_amplicon>
		<polymorphic_amplicon>GTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTYCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4730</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>103657</contig_pos>
        <strand>+</strand>
        <context>CTGTTCAACT[A/C]GAGAAAAGGC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACT</left_flank>
        <right_flank>GAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAGAATTGAAACTGGAAATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGATTACTTGATGGAATTTATGCGTGACGACACGGACCTTCCACTGTTCGAGTTCCTCAAATTCGCTCTCAAGTTTGATCCTGCCATCATTTGAGAAAGTGATCGAGCACGAATTCCTCACAAACTTCTAAGCTGAGTTTGTTCGTGAATTCGCTCCATTCTCCATTTTTTAATGCATTTTTTAAAAAACTTCACCTGGTTTTTTTGTTACCCGTAATTAATTGTGTTCAACACATTTCTATCTGAAACCCAGTCTACCCAATTCA</canonical>
            <polymorphic>CTAGAATTGAAACTGGAAATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTMGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGATTACTTGATGGAATTTATGCGTGACGACACGGACCTTCCACTGTTCGAGTTCCTCAAATTCGCTCTCAAGTTTGATCCTGCCATCATTTGAGAAAGTGATCGAGCACGAATTCCTCACAAACTTCTAAGCTGAGTTTGTTCGTGAATTCGCTCCATTCTCCATTTTTTAATGCATTTTTTAAAAAACTTCACCTGGTTTTTTTGTTACCCGTAATTAATTGTGTTCAACACATTTCTATCTGAAACCCAGTCTACCCAATTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTCGAG</site>
                <isoschizomers>
                    <enzyme>BssHI</enzyme>
                    <enzyme>PaeR7I</enzyme>
                    <enzyme>SciI</enzyme>
                    <enzyme>Sfr274I</enzyme>
                    <enzyme>SlaI</enzyme>
                    <enzyme>TliI</enzyme>
                    <enzyme>XhoI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>203 178 162 149 148 105 55</canonical_bands>
                <polymorphic_bands>327 203 162 148 105 55</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>155 145 123 122 118 111 104 78 44</canonical_bands>
                <polymorphic_bands>201 155 145 122 118 111 104 44</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>375 304 198 102 21</canonical_bands>
                <polymorphic_bands>679 198 102 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTTCCCTACAACAAAAAGAC</pcr_primer_p1>
		<pcr_primer_p2>CTGAAAACAACATTCCAAGAATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAG</canonical_amplicon>
		<polymorphic_amplicon>GTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTMGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4731</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>103596</contig_pos>
        <strand>+</strand>
        <context>AGACGGATGT[C/G]TGGTCCTATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGT</left_flank>
        <right_flank>TGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAAGTTTTGAGATTATATTTCAACGATAACCTATTTTTAAAGTTTTTTTTTTCCAGAGGCTAGAATTGAAACTGGAAATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGATTACTTGATGGAATTTATGCGTGACGACACGGACCTTCCACTGTTCGAGTTCCTCAAATTCGCTCTCAAGTTTGATCCTGCCATCATTTGAGAAAGTGATCGAGCACGAATTCCTCACAAACTTCTAAGCTGAGTTTGTTCGTGAATTCGCTCCATTCTCCATTTTTTAATGCATTTTTTAAAAAACTTCACCTGGTTTTTT</canonical>
            <polymorphic>AGAAAGTTTTGAGATTATATTTCAACGATAACCTATTTTTAAAGTTTTTTTTTTCCAGAGGCTAGAATTGAAACTGGAAATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTSTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGATTACTTGATGGAATTTATGCGTGACGACACGGACCTTCCACTGTTCGAGTTCCTCAAATTCGCTCTCAAGTTTGATCCTGCCATCATTTGAGAAAGTGATCGAGCACGAATTCCTCACAAACTTCTAAGCTGAGTTTGTTCGTGAATTCGCTCCATTCTCCATTTTTTAATGCATTTTTTAAAAAACTTCACCTGGTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNNGTC</site>
                <isoschizomers>
                    <enzyme>BoxI</enzyme>
                    <enzyme>BstPAI</enzyme>
                    <enzyme>PshAI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTGTTTATGGGTGGGTTTT</pcr_primer_p1>
		<pcr_primer_p2>CATCTCAAATTGTGACTGTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>AGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATG</canonical_amplicon>
		<polymorphic_amplicon>AGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTSTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4732</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>103547</contig_pos>
        <strand>+</strand>
        <context>GATCTCCCAA[A/C]TAAATTTCCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAA</left_flank>
        <right_flank>TAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAGTAAGTTTGGTACAATGACTTTGATAGGATTGTTAGAAGAATCTGAGAAAGTTTTGAGATTATATTTCAACGATAACCTATTTTTAAAGTTTTTTTTTTCCAGAGGCTAGAATTGAAACTGGAAATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGATTACTTGATGGAATTTATGCGTGACGACACGGACCTTCCACTGTTCGAGTTCCTCAAATTCGCTCTCAAGTTTGATCCTGCCATCATTTGAGAAAGTGATCGAGCACGAATTCCTCACAAACTTCTAAGCTGAGTTTGTTCGTGAATTCGCTC</canonical>
            <polymorphic>ACAAGTAAGTTTGGTACAATGACTTTGATAGGATTGTTAGAAGAATCTGAGAAAGTTTTGAGATTATATTTCAACGATAACCTATTTTTAAAGTTTTTTTTTTCCAGAGGCTAGAATTGAAACTGGAAATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAMTAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGATTACTTGATGGAATTTATGCGTGACGACACGGACCTTCCACTGTTCGAGTTCCTCAAATTCGCTCTCAAGTTTGATCCTGCCATCATTTGAGAAAGTGATCGAGCACGAATTCCTCACAAACTTCTAAGCTGAGTTTGTTCGTGAATTCGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGTTTATGGGTGGGTTTT</pcr_primer_p1>
		<pcr_primer_p2>CATCTCAAATTGTGACTGTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>AGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATG</canonical_amplicon>
		<polymorphic_amplicon>AGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAMTAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4734</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>103495</contig_pos>
        <strand>+</strand>
        <context>GGTTTTTTWW[A/T]AAACTTTTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAA</left_flank>
        <right_flank>AAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGACGAAGTTATTATAACAGAAGCATGCGGACCATCTATCAGAGAAATTATGACAAGTAAGTTTGGTACAATGACTTTGATAGGATTGTTAGAAGAATCTGAGAAAGTTTTGAGATTATATTTCAACGATAACCTATTTTTAAAGTTTTTTTTTTCCAGAGGCTAGAATTGAAACTGGAAATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGATTACTTGATGGAATTTATGCGTGACGACACGGACCTTCCACTGTTCGAGTTCCTCAAATTCGCTCTCAAGTTTGATCCTGCCATCATTTGAGAAAGTGATC</canonical>
            <polymorphic>AGACGAAGTTATTATAACAGAAGCATGCGGACCATCTATCAGAGAAATTATGACAAGTAAGTTTGGTACAATGACTTTGATAGGATTGTTAGAAGAATCTGAGAAAGTTTTGAGATTATATTTCAACGATAACCTATTTTTAAAGTTTTTTTTTTCCAGAGGCTAGAATTGAAACTGGAAATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAWAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGATTACTTGATGGAATTTATGCGTGACGACACGGACCTTCCACTGTTCGAGTTCCTCAAATTCGCTCTCAAGTTTGATCCTGCCATCATTTGAGAAAGTGATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>503 356 141</canonical_bands>
                <polymorphic_bands>859 141</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATTATCTCAATGAGTGATTTT</pcr_primer_p1>
		<pcr_primer_p2>GTCTTTTTGTTGTAGGGAAGAC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGAC</canonical_amplicon>
		<polymorphic_amplicon>CGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAWAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4735</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>103494</contig_pos>
        <strand>+</strand>
        <context>GGGTTTTTTW[A/T]WAAACTTTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTA</left_flank>
        <right_flank>AAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGACGAAGTTATTATAACAGAAGCATGCGGACCATCTATCAGAGAAATTATGACAAGTAAGTTTGGTACAATGACTTTGATAGGATTGTTAGAAGAATCTGAGAAAGTTTTGAGATTATATTTCAACGATAACCTATTTTTAAAGTTTTTTTTTTCCAGAGGCTAGAATTGAAACTGGAAATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGATTACTTGATGGAATTTATGCGTGACGACACGGACCTTCCACTGTTCGAGTTCCTCAAATTCGCTCTCAAGTTTGATCCTGCCATCATTTGAGAAAGTGAT</canonical>
            <polymorphic>CAGACGAAGTTATTATAACAGAAGCATGCGGACCATCTATCAGAGAAATTATGACAAGTAAGTTTGGTACAATGACTTTGATAGGATTGTTAGAAGAATCTGAGAAAGTTTTGAGATTATATTTCAACGATAACCTATTTTTAAAGTTTTTTTTTTCCAGAGGCTAGAATTGAAACTGGAAATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAWAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGATTACTTGATGGAATTTATGCGTGACGACACGGACCTTCCACTGTTCGAGTTCCTCAAATTCGCTCTCAAGTTTGATCCTGCCATCATTTGAGAAAGTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 356 142</canonical_bands>
                <polymorphic_bands>858 142</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>503 239 141 117</canonical_bands>
                <polymorphic_bands>620 239 141</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATTATCTCAATGAGTGATTTT</pcr_primer_p1>
		<pcr_primer_p2>GTCTTTTTGTTGTAGGGAAGAC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGAC</canonical_amplicon>
		<polymorphic_amplicon>CGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAWAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4736</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>103466</contig_pos>
        <strand>+</strand>
        <context>CATGCGTGCC[C/T]CAGAAGTGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCC</left_flank>
        <right_flank>CAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTTGAAGAATCCACCGCCAGGATATACAGACGAAGTTATTATAACAGAAGCATGCGGACCATCTATCAGAGAAATTATGACAAGTAAGTTTGGTACAATGACTTTGATAGGATTGTTAGAAGAATCTGAGAAAGTTTTGAGATTATATTTCAACGATAACCTATTTTTAAAGTTTTTTTTTTCCAGAGGCTAGAATTGAAACTGGAAATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGATTACTTGATGGAATTTATGCGTGACGACACGGACCTTCCACTGTTCGAGTTCCTCAAATTCGCTCTCAAGTT</canonical>
            <polymorphic>ATGTTGAAGAATCCACCGCCAGGATATACAGACGAAGTTATTATAACAGAAGCATGCGGACCATCTATCAGAGAAATTATGACAAGTAAGTTTGGTACAATGACTTTGATAGGATTGTTAGAAGAATCTGAGAAAGTTTTGAGATTATATTTCAACGATAACCTATTTTTAAAGTTTTTTTTTTCCAGAGGCTAGAATTGAAACTGGAAATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCYCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGATTACTTGATGGAATTTATGCGTGACGACACGGACCTTCCACTGTTCGAGTTCCTCAAATTCGCTCTCAAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>371 210 128 109 98 84</canonical_bands>
                <polymorphic_bands>469 210 128 109 84</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>179 158 151 137 99 90 70 59 57</canonical_bands>
                <polymorphic_bands>215 179 151 137 99 90 70 59</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATTATCTCAATGAGTGATTTT</pcr_primer_p1>
		<pcr_primer_p2>GTCTTTTTGTTGTAGGGAAGAC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGAC</canonical_amplicon>
		<polymorphic_amplicon>CGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCYCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4737</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>103439</contig_pos>
        <strand>+</strand>
        <context>AGKAGTCAAR[A/C]TGGTCCAACC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAA</left_flank>
        <right_flank>TGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTATTGTTGCTGTATTCAGTTGGTATGTTGAAGAATCCACCGCCAGGATATACAGACGAAGTTATTATAACAGAAGCATGCGGACCATCTATCAGAGAAATTATGACAAGTAAGTTTGGTACAATGACTTTGATAGGATTGTTAGAAGAATCTGAGAAAGTTTTGAGATTATATTTCAACGATAACCTATTTTTAAAGTTTTTTTTTTCCAGAGGCTAGAATTGAAACTGGAAATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGATTACTTGATGGAATTTATGCGTGACGACACGGACCTTCCACTGTT</canonical>
            <polymorphic>AATTTATTGTTGCTGTATTCAGTTGGTATGTTGAAGAATCCACCGCCAGGATATACAGACGAAGTTATTATAACAGAAGCATGCGGACCATCTATCAGAGAAATTATGACAAGTAAGTTTGGTACAATGACTTTGATAGGATTGTTAGAAGAATCTGAGAAAGTTTTGAGATTATATTTCAACGATAACCTATTTTTAAAGTTTTTTTTTTCCAGAGGCTAGAATTGAAACTGGAAATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAAMTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGATTACTTGATGGAATTTATGCGTGACGACACGGACCTTCCACTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATTATCTCAATGAGTGATTTT</pcr_primer_p1>
		<pcr_primer_p2>GTCTTTTTGTTGTAGGGAAGAC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGAC</canonical_amplicon>
		<polymorphic_amplicon>CGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAAMTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4738</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>103438</contig_pos>
        <strand>+</strand>
        <context>AAGKAGTCAA[A/G]MTGGTCCAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAA</left_flank>
        <right_flank>CTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTTATTGTTGCTGTATTCAGTTGGTATGTTGAAGAATCCACCGCCAGGATATACAGACGAAGTTATTATAACAGAAGCATGCGGACCATCTATCAGAGAAATTATGACAAGTAAGTTTGGTACAATGACTTTGATAGGATTGTTAGAAGAATCTGAGAAAGTTTTGAGATTATATTTCAACGATAACCTATTTTTAAAGTTTTTTTTTTCCAGAGGCTAGAATTGAAACTGGAAATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGATTACTTGATGGAATTTATGCGTGACGACACGGACCTTCCACTGT</canonical>
            <polymorphic>TAATTTATTGTTGCTGTATTCAGTTGGTATGTTGAAGAATCCACCGCCAGGATATACAGACGAAGTTATTATAACAGAAGCATGCGGACCATCTATCAGAGAAATTATGACAAGTAAGTTTGGTACAATGACTTTGATAGGATTGTTAGAAGAATCTGAGAAAGTTTTGAGATTATATTTCAACGATAACCTATTTTTAAAGTTTTTTTTTTCCAGAGGCTAGAATTGAAACTGGAAATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAARCTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGATTACTTGATGGAATTTATGCGTGACGACACGGACCTTCCACTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATTATCTCAATGAGTGATTTT</pcr_primer_p1>
		<pcr_primer_p2>GTCTTTTTGTTGTAGGGAAGAC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGAC</canonical_amplicon>
		<polymorphic_amplicon>CGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAARCTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4739</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>103431</contig_pos>
        <strand>+</strand>
        <context>AACCCGGAAG[G/T]AGTCAARMTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAG</left_flank>
        <right_flank>AGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACACAATAATTTATTGTTGCTGTATTCAGTTGGTATGTTGAAGAATCCACCGCCAGGATATACAGACGAAGTTATTATAACAGAAGCATGCGGACCATCTATCAGAGAAATTATGACAAGTAAGTTTGGTACAATGACTTTGATAGGATTGTTAGAAGAATCTGAGAAAGTTTTGAGATTATATTTCAACGATAACCTATTTTTAAAGTTTTTTTTTTCCAGAGGCTAGAATTGAAACTGGAAATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGATTACTTGATGGAATTTATGCGTGACGACACGGACCTT</canonical>
            <polymorphic>CACACAATAATTTATTGTTGCTGTATTCAGTTGGTATGTTGAAGAATCCACCGCCAGGATATACAGACGAAGTTATTATAACAGAAGCATGCGGACCATCTATCAGAGAAATTATGACAAGTAAGTTTGGTACAATGACTTTGATAGGATTGTTAGAAGAATCTGAGAAAGTTTTGAGATTATATTTCAACGATAACCTATTTTTAAAGTTTTTTTTTTCCAGAGGCTAGAATTGAAACTGGAAATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGKAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGATTACTTGATGGAATTTATGCGTGACGACACGGACCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>322 321 179 115 44 19</canonical_bands>
                <polymorphic_bands>340 322 179 115 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATTATCTCAATGAGTGATTTT</pcr_primer_p1>
		<pcr_primer_p2>GTCTTTTTGTTGTAGGGAAGAC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGAC</canonical_amplicon>
		<polymorphic_amplicon>CGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGKAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4740</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>103392</contig_pos>
        <strand>+</strand>
        <context>ATTGATTATG[A/G]AAATTCGCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATG</left_flank>
        <right_flank>AAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTGTTATACAGGCGCTCCGTAAAATTCGAGAGAACCCACACAATAATTTATTGTTGCTGTATTCAGTTGGTATGTTGAAGAATCCACCGCCAGGATATACAGACGAAGTTATTATAACAGAAGCATGCGGACCATCTATCAGAGAAATTATGACAAGTAAGTTTGGTACAATGACTTTGATAGGATTGTTAGAAGAATCTGAGAAAGTTTTGAGATTATATTTCAACGATAACCTATTTTTAAAGTTTTTTTTTTCCAGAGGCTAGAATTGAAACTGGAAATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAA</canonical>
            <polymorphic>TAATTGTTATACAGGCGCTCCGTAAAATTCGAGAGAACCCACACAATAATTTATTGTTGCTGTATTCAGTTGGTATGTTGAAGAATCCACCGCCAGGATATACAGACGAAGTTATTATAACAGAAGCATGCGGACCATCTATCAGAGAAATTATGACAAGTAAGTTTGGTACAATGACTTTGATAGGATTGTTAGAAGAATCTGAGAAAGTTTTGAGATTATATTTCAACGATAACCTATTTTTAAAGTTTTTTTTTTCCAGAGGCTAGAATTGAAACTGGAAATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGRAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTATGAAATGGATACGAGTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAGACCTGAGAACAAAGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTT</canonical_amplicon>
		<polymorphic_amplicon>AGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGRAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4741</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>103371</contig_pos>
        <strand>+</strand>
        <context>AGTGATTTTG[A/G]TATTAAAGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTG</left_flank>
        <right_flank>TATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAACAATGATCAGATGAAATAATTGTTATACAGGCGCTCCGTAAAATTCGAGAGAACCCACACAATAATTTATTGTTGCTGTATTCAGTTGGTATGTTGAAGAATCCACCGCCAGGATATACAGACGAAGTTATTATAACAGAAGCATGCGGACCATCTATCAGAGAAATTATGACAAGTAAGTTTGGTACAATGACTTTGATAGGATTGTTAGAAGAATCTGAGAAAGTTTTGAGATTATATTTCAACGATAACCTATTTTTAAAGTTTTTTTTTTCCAGAGGCTAGAATTGAAACTGGAAATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAAC</canonical>
            <polymorphic>TGAAACAATGATCAGATGAAATAATTGTTATACAGGCGCTCCGTAAAATTCGAGAGAACCCACACAATAATTTATTGTTGCTGTATTCAGTTGGTATGTTGAAGAATCCACCGCCAGGATATACAGACGAAGTTATTATAACAGAAGCATGCGGACCATCTATCAGAGAAATTATGACAAGTAAGTTTGGTACAATGACTTTGATAGGATTGTTAGAAGAATCTGAGAAAGTTTTGAGATTATATTTCAACGATAACCTATTTTTAAAGTTTTTTTTTTCCAGAGGCTAGAATTGAAACTGGAAATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGRTATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATACCAAATTGTGTTCGTTCT</pcr_primer_p1>
		<pcr_primer_p2>GGTTTCCAGATTCAGAGTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACC</canonical_amplicon>
		<polymorphic_amplicon>AATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGRTATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4742</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>103340</contig_pos>
        <strand>+</strand>
        <context>TACGAGTTTG[A/G]CCCACGCGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTG</left_flank>
        <right_flank>CCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCGTGAGATGAAAGTAAGACCATTTTTCCTGAAACAATGATCAGATGAAATAATTGTTATACAGGCGCTCCGTAAAATTCGAGAGAACCCACACAATAATTTATTGTTGCTGTATTCAGTTGGTATGTTGAAGAATCCACCGCCAGGATATACAGACGAAGTTATTATAACAGAAGCATGCGGACCATCTATCAGAGAAATTATGACAAGTAAGTTTGGTACAATGACTTTGATAGGATTGTTAGAAGAATCTGAGAAAGTTTTGAGATTATATTTCAACGATAACCTATTTTTAAAGTTTTTTTTTTCCAGAGGCTAGAATTGAAACTGGAAATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTT</canonical>
            <polymorphic>CAGCGTGAGATGAAAGTAAGACCATTTTTCCTGAAACAATGATCAGATGAAATAATTGTTATACAGGCGCTCCGTAAAATTCGAGAGAACCCACACAATAATTTATTGTTGCTGTATTCAGTTGGTATGTTGAAGAATCCACCGCCAGGATATACAGACGAAGTTATTATAACAGAAGCATGCGGACCATCTATCAGAGAAATTATGACAAGTAAGTTTGGTACAATGACTTTGATAGGATTGTTAGAAGAATCTGAGAAAGTTTTGAGATTATATTTCAACGATAACCTATTTTTAAAGTTTTTTTTTTCCAGAGGCTAGAATTGAAACTGGAAATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGRCCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATACCAAATTGTGTTCGTTCT</pcr_primer_p1>
		<pcr_primer_p2>GGTTTCCAGATTCAGAGTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACC</canonical_amplicon>
		<polymorphic_amplicon>AATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGRCCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4743</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>114480</contig_pos>
        <strand>+</strand>
        <context>TCATTCTGAT[C/T]TTTGATCCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTGATGAAACCGATTCTCCATTGTTTGATCTTCTCAAGTTCATTCTGAT</left_flank>
        <right_flank>TTTGATCCTGCCGAGAGACCATCGTTCGCTGAAGTTATCAGCCACAAGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGTGCCCCAGAAGTATTCATGGGTGAGTTGTTCAGTTTCAGTTTCATCAGAACAGTGCTGACAATCTTTCTGGATTTTTCATAAAATATATGCTCCCTATTTTCAGGCCTTCCTTACAACGAAAAGTCGGATGTTTGGTCCATGGGATGCCTGATGGCTGAACTGTACATTGTGAAGTTGCTATTCCGTCCGAATCATGATGCTCCCACTTGCGAGAAAGATCAATCTACATTTGAGCACATGGTGTCCAGAATGAATCCAACCATTCCACCAGAAATGATCGAAGAGTCTAAGCAAAGAGGGTACGAAATTATCCTATCACCACTATTTCAGATAAATTCATTAGGAACAATTTAAAAACTTGTTTTCAGAAGTTGCACCATCAATTTCGAATTCCTCGAAAATCGCAAAGAAGCAGACAACCAGTACTTGTTAATGAAATTAATGCGTGATGAAACCGATTCTCCATTGTTTGATCTTCTCAAGTTCATTCTGATCTTTGATCCTGCCGAGAGACCATCGTTCGCTGAAGTTATCAGCCACAAGTTCTTTGCAGGCATTTAAATTCAAATTTTGTATTTCTTCCATGTTCACTTCTGTTTCATATTTTCTACCCGTTACACATTCATGTTTCAGTGACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCCATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTTGTGCTGTTTTTCAAAAACAAAAAACACTAGCTTTTTCGATTCATTCGAAAACTTTTTTAACGATGAAAACGCGGGTAGTACGTCTTACCAAAGTTCAAGGCAGAGAAGTTT</canonical>
            <polymorphic>TTCGTGCCCCAGAAGTATTCATGGGTGAGTTGTTCAGTTTCAGTTTCATCAGAACAGTGCTGACAATCTTTCTGGATTTTTCATAAAATATATGCTCCCTATTTTCAGGCCTTCCTTACAACGAAAAGTCGGATGTTTGGTCCATGGGATGCCTGATGGCTGAACTGTACATTGTGAAGTTGCTATTCCGTCCGAATCATGATGCTCCCACTTGCGAGAAAGATCAATCTACATTTGAGCACATGGTGTCCAGAATGAATCCAACCATTCCACCAGAAATGATCGAAGAGTCTAAGCAAAGAGGGTACGAAATTATCCTATCACCACTATTTCAGATAAATTCATTAGGAACAATTTAAAAACTTGTTTTCAGAAGTTGCACCATCAATTTCGAATTCCTCGAAAATCGCAAAGAAGCAGACAACCAGTACTTGTTAATGAAATTAATGCGTGATGAAACCGATTCTCCATTGTTTGATCTTCTCAAGTTCATTCTGATYTTTGATCCTGCCGAGAGACCATCGTTCGCTGAAGTTATCAGCCACAAGTTCTTTGCAGGCATTTAAATTCAAATTTTGTATTTCTTCCATGTTCACTTCTGTTTCATATTTTCTACCCGTTACACATTCATGTTTCAGTGACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCCATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTTGTGCTGTTTTTCAAAAACAAAAAACACTAGCTTTTTCGATTCATTCGAAAACTTTTTTAACGATGAAAACGCGGGTAGTACGTCTTACCAAAGTTCAAGGCAGAGAAGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>497 221 196 59 20 7</canonical_bands>
                <polymorphic_bands>497 221 196 59 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAATGAAATTAATGCGTGATG</pcr_primer_p1>
		<pcr_primer_p2>AAAAATAAGTTGAGTGTCGTCAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTAATGAAATTAATGCGTGATGAAACCGATTCTCCATTGTTTGATCTTCTCAAGTTCATTCTGATCTTTGATCCTGCCGAGAGACCATCGTTCGCTGAAGTTATCAGCCACAAGTTCTTTGCAGGCATTTAAATTCAAATTTTGTATTTCTTCCATGTTCACTTCTGTTTCATATTTTCTACCCGTTACACATTCATGTTTCAGTGACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTAATGAAATTAATGCGTGATGAAACCGATTCTCCATTGTTTGATCTTCTCAAGTTCATTCTGATYTTTGATCCTGCCGAGAGACCATCGTTCGCTGAAGTTATCAGCCACAAGTTCTTTGCAGGCATTTAAATTCAAATTTTGTATTTCTTCCATGTTCACTTCTGTTTCATATTTTCTACCCGTTACACATTCATGTTTCAGTGACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4744</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>114616</contig_pos>
        <strand>+</strand>
        <context>ATTCATGTTT[C/T]AGTGACAATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCATGTTCACTTCTGTTTCATATTTTCTACCCGTTACACATTCATGTTT</left_flank>
        <right_flank>AGTGACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGTCCATGGGATGCCTGATGGCTGAACTGTACATTGTGAAGTTGCTATTCCGTCCGAATCATGATGCTCCCACTTGCGAGAAAGATCAATCTACATTTGAGCACATGGTGTCCAGAATGAATCCAACCATTCCACCAGAAATGATCGAAGAGTCTAAGCAAAGAGGGTACGAAATTATCCTATCACCACTATTTCAGATAAATTCATTAGGAACAATTTAAAAACTTGTTTTCAGAAGTTGCACCATCAATTTCGAATTCCTCGAAAATCGCAAAGAAGCAGACAACCAGTACTTGTTAATGAAATTAATGCGTGATGAAACCGATTCTCCATTGTTTGATCTTCTCAAGTTCATTCTGATCTTTGATCCTGCCGAGAGACCATCGTTCGCTGAAGTTATCAGCCACAAGTTCTTTGCAGGCATTTAAATTCAAATTTTGTATTTCTTCCATGTTCACTTCTGTTTCATATTTTCTACCCGTTACACATTCATGTTTCAGTGACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCCATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTTGTGCTGTTTTTCAAAAACAAAAAACACTAGCTTTTTCGATTCATTCGAAAACTTTTTTAACGATGAAAACGCGGGTAGTACGTCTTACCAAAGTTCAAGGCAGAGAAGTTTTTTACGAAAAGTTTCCGTCTCTTGGAGTCGTCCCGCTTCTCACAGAAACTGTAGTTTTCTCCGAATTCCGTTGTCATTTATTGAAGTTCATCAAGATCGATTGTTTTAAATTTCCGAATGTATCCACTCTAGGAAC</canonical>
            <polymorphic>TTGGTCCATGGGATGCCTGATGGCTGAACTGTACATTGTGAAGTTGCTATTCCGTCCGAATCATGATGCTCCCACTTGCGAGAAAGATCAATCTACATTTGAGCACATGGTGTCCAGAATGAATCCAACCATTCCACCAGAAATGATCGAAGAGTCTAAGCAAAGAGGGTACGAAATTATCCTATCACCACTATTTCAGATAAATTCATTAGGAACAATTTAAAAACTTGTTTTCAGAAGTTGCACCATCAATTTCGAATTCCTCGAAAATCGCAAAGAAGCAGACAACCAGTACTTGTTAATGAAATTAATGCGTGATGAAACCGATTCTCCATTGTTTGATCTTCTCAAGTTCATTCTGATCTTTGATCCTGCCGAGAGACCATCGTTCGCTGAAGTTATCAGCCACAAGTTCTTTGCAGGCATTTAAATTCAAATTTTGTATTTCTTCCATGTTCACTTCTGTTTCATATTTTCTACCCGTTACACATTCATGTTTYAGTGACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCCATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTTGTGCTGTTTTTCAAAAACAAAAAACACTAGCTTTTTCGATTCATTCGAAAACTTTTTTAACGATGAAAACGCGGGTAGTACGTCTTACCAAAGTTCAAGGCAGAGAAGTTTTTTACGAAAAGTTTCCGTCTCTTGGAGTCGTCCCGCTTCTCACAGAAACTGTAGTTTTCTCCGAATTCCGTTGTCATTTATTGAAGTTCATCAAGATCGATTGTTTTAAATTTCCGAATGTATCCACTCTAGGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTCTCCATTGTTTGATCTTC</pcr_primer_p1>
		<pcr_primer_p2>TGAGAAGAATGGTAGTGCTAAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATTCTCCATTGTTTGATCTTCTCAAGTTCATTCTGATCTTTGATCCTGCCGAGAGACCATCGTTCGCTGAAGTTATCAGCCACAAGTTCTTTGCAGGCATTTAAATTCAAATTTTGTATTTCTTCCATGTTCACTTCTGTTTCATATTTTCTACCCGTTACACATTCATGTTTCAGTGACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCA</canonical_amplicon>
		<polymorphic_amplicon>GATTCTCCATTGTTTGATCTTCTCAAGTTCATTCTGATCTTTGATCCTGCCGAGAGACCATCGTTCGCTGAAGTTATCAGCCACAAGTTCTTTGCAGGCATTTAAATTCAAATTTTGTATTTCTTCCATGTTCACTTCTGTTTCATATTTTCTACCCGTTACACATTCATGTTTYAGTGACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4745</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>114725</contig_pos>
        <strand>+</strand>
        <context>CAAATCACCT[G/T]TTTTGTGAGY</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCT</left_flank>
        <right_flank>TTTTGTGAGCCATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTCCAGAATGAATCCAACCATTCCACCAGAAATGATCGAAGAGTCTAAGCAAAGAGGGTACGAAATTATCCTATCACCACTATTTCAGATAAATTCATTAGGAACAATTTAAAAACTTGTTTTCAGAAGTTGCACCATCAATTTCGAATTCCTCGAAAATCGCAAAGAAGCAGACAACCAGTACTTGTTAATGAAATTAATGCGTGATGAAACCGATTCTCCATTGTTTGATCTTCTCAAGTTCATTCTGATCTTTGATCCTGCCGAGAGACCATCGTTCGCTGAAGTTATCAGCCACAAGTTCTTTGCAGGCATTTAAATTCAAATTTTGTATTTCTTCCATGTTCACTTCTGTTTCATATTTTCTACCCGTTACACATTCATGTTTCAGTGACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCCATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTTGTGCTGTTTTTCAAAAACAAAAAACACTAGCTTTTTCGATTCATTCGAAAACTTTTTTAACGATGAAAACGCGGGTAGTACGTCTTACCAAAGTTCAAGGCAGAGAAGTTTTTTACGAAAAGTTTCCGTCTCTTGGAGTCGTCCCGCTTCTCACAGAAACTGTAGTTTTCTCCGAATTCCGTTGTCATTTATTGAAGTTCATCAAGATCGATTGTTTTAAATTTCCGAATGTATCCACTCTAGGAACTTTTCCGGCTTGTTTGATGTGCCGATATCAGAATACCTTTTTTAAAAAATGTTTGATGAAGAATCAAGAAAGCTGAATTAGAATTTTGAAAACATCGAAATCGTATATT</canonical>
            <polymorphic>GTGTCCAGAATGAATCCAACCATTCCACCAGAAATGATCGAAGAGTCTAAGCAAAGAGGGTACGAAATTATCCTATCACCACTATTTCAGATAAATTCATTAGGAACAATTTAAAAACTTGTTTTCAGAAGTTGCACCATCAATTTCGAATTCCTCGAAAATCGCAAAGAAGCAGACAACCAGTACTTGTTAATGAAATTAATGCGTGATGAAACCGATTCTCCATTGTTTGATCTTCTCAAGTTCATTCTGATCTTTGATCCTGCCGAGAGACCATCGTTCGCTGAAGTTATCAGCCACAAGTTCTTTGCAGGCATTTAAATTCAAATTTTGTATTTCTTCCATGTTCACTTCTGTTTCATATTTTCTACCCGTTACACATTCATGTTTCAGTGACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTKTTTTGTGAGCCATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTTGTGCTGTTTTTCAAAAACAAAAAACACTAGCTTTTTCGATTCATTCGAAAACTTTTTTAACGATGAAAACGCGGGTAGTACGTCTTACCAAAGTTCAAGGCAGAGAAGTTTTTTACGAAAAGTTTCCGTCTCTTGGAGTCGTCCCGCTTCTCACAGAAACTGTAGTTTTCTCCGAATTCCGTTGTCATTTATTGAAGTTCATCAAGATCGATTGTTTTAAATTTCCGAATGTATCCACTCTAGGAACTTTTCCGGCTTGTTTGATGTGCCGATATCAGAATACCTTTTTTAAAAAATGTTTGATGAAGAATCAAGAAAGCTGAATTAGAATTTTGAAAACATCGAAATCGTATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAATGTTCCTTATCCCACT</pcr_primer_p1>
		<pcr_primer_p2>AAAATGCAAACGATTATTTTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCCATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTT</canonical_amplicon>
		<polymorphic_amplicon>GACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTKTTTTGTGAGCCATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4746</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>114735</contig_pos>
        <strand>+</strand>
        <context>KTTTTGTGAG[C/T]YWTTTGACAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAG</left_flank>
        <right_flank>CATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAATCCAACCATTCCACCAGAAATGATCGAAGAGTCTAAGCAAAGAGGGTACGAAATTATCCTATCACCACTATTTCAGATAAATTCATTAGGAACAATTTAAAAACTTGTTTTCAGAAGTTGCACCATCAATTTCGAATTCCTCGAAAATCGCAAAGAAGCAGACAACCAGTACTTGTTAATGAAATTAATGCGTGATGAAACCGATTCTCCATTGTTTGATCTTCTCAAGTTCATTCTGATCTTTGATCCTGCCGAGAGACCATCGTTCGCTGAAGTTATCAGCCACAAGTTCTTTGCAGGCATTTAAATTCAAATTTTGTATTTCTTCCATGTTCACTTCTGTTTCATATTTTCTACCCGTTACACATTCATGTTTCAGTGACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCCATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTTGTGCTGTTTTTCAAAAACAAAAAACACTAGCTTTTTCGATTCATTCGAAAACTTTTTTAACGATGAAAACGCGGGTAGTACGTCTTACCAAAGTTCAAGGCAGAGAAGTTTTTTACGAAAAGTTTCCGTCTCTTGGAGTCGTCCCGCTTCTCACAGAAACTGTAGTTTTCTCCGAATTCCGTTGTCATTTATTGAAGTTCATCAAGATCGATTGTTTTAAATTTCCGAATGTATCCACTCTAGGAACTTTTCCGGCTTGTTTGATGTGCCGATATCAGAATACCTTTTTTAAAAAATGTTTGATGAAGAATCAAGAAAGCTGAATTAGAATTTTGAAAACATCGAAATCGTATATTATTTAAGAAA</canonical>
            <polymorphic>TGAATCCAACCATTCCACCAGAAATGATCGAAGAGTCTAAGCAAAGAGGGTACGAAATTATCCTATCACCACTATTTCAGATAAATTCATTAGGAACAATTTAAAAACTTGTTTTCAGAAGTTGCACCATCAATTTCGAATTCCTCGAAAATCGCAAAGAAGCAGACAACCAGTACTTGTTAATGAAATTAATGCGTGATGAAACCGATTCTCCATTGTTTGATCTTCTCAAGTTCATTCTGATCTTTGATCCTGCCGAGAGACCATCGTTCGCTGAAGTTATCAGCCACAAGTTCTTTGCAGGCATTTAAATTCAAATTTTGTATTTCTTCCATGTTCACTTCTGTTTCATATTTTCTACCCGTTACACATTCATGTTTCAGTGACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGYCATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTTGTGCTGTTTTTCAAAAACAAAAAACACTAGCTTTTTCGATTCATTCGAAAACTTTTTTAACGATGAAAACGCGGGTAGTACGTCTTACCAAAGTTCAAGGCAGAGAAGTTTTTTACGAAAAGTTTCCGTCTCTTGGAGTCGTCCCGCTTCTCACAGAAACTGTAGTTTTCTCCGAATTCCGTTGTCATTTATTGAAGTTCATCAAGATCGATTGTTTTAAATTTCCGAATGTATCCACTCTAGGAACTTTTCCGGCTTGTTTGATGTGCCGATATCAGAATACCTTTTTTAAAAAATGTTTGATGAAGAATCAAGAAAGCTGAATTAGAATTTTGAAAACATCGAAATCGTATATTATTTAAGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>286 225 213 165 64 47</canonical_bands>
                <polymorphic_bands>378 286 225 64 47</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACAATGTTCCTTATCCCACT</pcr_primer_p1>
		<pcr_primer_p2>AAAATGCAAACGATTATTTTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCCATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTT</canonical_amplicon>
		<polymorphic_amplicon>GACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGYCATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4747</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>114736</contig_pos>
        <strand>+</strand>
        <context>TTTTGTGAGY[C/T]WTTTGACACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGC</left_flank>
        <right_flank>ATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATCCAACCATTCCACCAGAAATGATCGAAGAGTCTAAGCAAAGAGGGTACGAAATTATCCTATCACCACTATTTCAGATAAATTCATTAGGAACAATTTAAAAACTTGTTTTCAGAAGTTGCACCATCAATTTCGAATTCCTCGAAAATCGCAAAGAAGCAGACAACCAGTACTTGTTAATGAAATTAATGCGTGATGAAACCGATTCTCCATTGTTTGATCTTCTCAAGTTCATTCTGATCTTTGATCCTGCCGAGAGACCATCGTTCGCTGAAGTTATCAGCCACAAGTTCTTTGCAGGCATTTAAATTCAAATTTTGTATTTCTTCCATGTTCACTTCTGTTTCATATTTTCTACCCGTTACACATTCATGTTTCAGTGACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCCATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTTGTGCTGTTTTTCAAAAACAAAAAACACTAGCTTTTTCGATTCATTCGAAAACTTTTTTAACGATGAAAACGCGGGTAGTACGTCTTACCAAAGTTCAAGGCAGAGAAGTTTTTTACGAAAAGTTTCCGTCTCTTGGAGTCGTCCCGCTTCTCACAGAAACTGTAGTTTTCTCCGAATTCCGTTGTCATTTATTGAAGTTCATCAAGATCGATTGTTTTAAATTTCCGAATGTATCCACTCTAGGAACTTTTCCGGCTTGTTTGATGTGCCGATATCAGAATACCTTTTTTAAAAAATGTTTGATGAAGAATCAAGAAAGCTGAATTAGAATTTTGAAAACATCGAAATCGTATATTATTTAAGAAAA</canonical>
            <polymorphic>GAATCCAACCATTCCACCAGAAATGATCGAAGAGTCTAAGCAAAGAGGGTACGAAATTATCCTATCACCACTATTTCAGATAAATTCATTAGGAACAATTTAAAAACTTGTTTTCAGAAGTTGCACCATCAATTTCGAATTCCTCGAAAATCGCAAAGAAGCAGACAACCAGTACTTGTTAATGAAATTAATGCGTGATGAAACCGATTCTCCATTGTTTGATCTTCTCAAGTTCATTCTGATCTTTGATCCTGCCGAGAGACCATCGTTCGCTGAAGTTATCAGCCACAAGTTCTTTGCAGGCATTTAAATTCAAATTTTGTATTTCTTCCATGTTCACTTCTGTTTCATATTTTCTACCCGTTACACATTCATGTTTCAGTGACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCYATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTTGTGCTGTTTTTCAAAAACAAAAAACACTAGCTTTTTCGATTCATTCGAAAACTTTTTTAACGATGAAAACGCGGGTAGTACGTCTTACCAAAGTTCAAGGCAGAGAAGTTTTTTACGAAAAGTTTCCGTCTCTTGGAGTCGTCCCGCTTCTCACAGAAACTGTAGTTTTCTCCGAATTCCGTTGTCATTTATTGAAGTTCATCAAGATCGATTGTTTTAAATTTCCGAATGTATCCACTCTAGGAACTTTTCCGGCTTGTTTGATGTGCCGATATCAGAATACCTTTTTTAAAAAATGTTTGATGAAGAATCAAGAAAGCTGAATTAGAATTTTGAAAACATCGAAATCGTATATTATTTAAGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>285 225 213 165 64 48</canonical_bands>
                <polymorphic_bands>378 285 225 64 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACAATGTTCCTTATCCCACT</pcr_primer_p1>
		<pcr_primer_p2>AAAATGCAAACGATTATTTTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCCATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTT</canonical_amplicon>
		<polymorphic_amplicon>GACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCYATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4748</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>114737</contig_pos>
        <strand>+</strand>
        <context>TTTGTGAGYY[A/T]TTTGACACCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCC</left_flank>
        <right_flank>TTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCCAACCATTCCACCAGAAATGATCGAAGAGTCTAAGCAAAGAGGGTACGAAATTATCCTATCACCACTATTTCAGATAAATTCATTAGGAACAATTTAAAAACTTGTTTTCAGAAGTTGCACCATCAATTTCGAATTCCTCGAAAATCGCAAAGAAGCAGACAACCAGTACTTGTTAATGAAATTAATGCGTGATGAAACCGATTCTCCATTGTTTGATCTTCTCAAGTTCATTCTGATCTTTGATCCTGCCGAGAGACCATCGTTCGCTGAAGTTATCAGCCACAAGTTCTTTGCAGGCATTTAAATTCAAATTTTGTATTTCTTCCATGTTCACTTCTGTTTCATATTTTCTACCCGTTACACATTCATGTTTCAGTGACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCCATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTTGTGCTGTTTTTCAAAAACAAAAAACACTAGCTTTTTCGATTCATTCGAAAACTTTTTTAACGATGAAAACGCGGGTAGTACGTCTTACCAAAGTTCAAGGCAGAGAAGTTTTTTACGAAAAGTTTCCGTCTCTTGGAGTCGTCCCGCTTCTCACAGAAACTGTAGTTTTCTCCGAATTCCGTTGTCATTTATTGAAGTTCATCAAGATCGATTGTTTTAAATTTCCGAATGTATCCACTCTAGGAACTTTTCCGGCTTGTTTGATGTGCCGATATCAGAATACCTTTTTTAAAAAATGTTTGATGAAGAATCAAGAAAGCTGAATTAGAATTTTGAAAACATCGAAATCGTATATTATTTAAGAAAAT</canonical>
            <polymorphic>AATCCAACCATTCCACCAGAAATGATCGAAGAGTCTAAGCAAAGAGGGTACGAAATTATCCTATCACCACTATTTCAGATAAATTCATTAGGAACAATTTAAAAACTTGTTTTCAGAAGTTGCACCATCAATTTCGAATTCCTCGAAAATCGCAAAGAAGCAGACAACCAGTACTTGTTAATGAAATTAATGCGTGATGAAACCGATTCTCCATTGTTTGATCTTCTCAAGTTCATTCTGATCTTTGATCCTGCCGAGAGACCATCGTTCGCTGAAGTTATCAGCCACAAGTTCTTTGCAGGCATTTAAATTCAAATTTTGTATTTCTTCCATGTTCACTTCTGTTTCATATTTTCTACCCGTTACACATTCATGTTTCAGTGACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCCWTTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTTGTGCTGTTTTTCAAAAACAAAAAACACTAGCTTTTTCGATTCATTCGAAAACTTTTTTAACGATGAAAACGCGGGTAGTACGTCTTACCAAAGTTCAAGGCAGAGAAGTTTTTTACGAAAAGTTTCCGTCTCTTGGAGTCGTCCCGCTTCTCACAGAAACTGTAGTTTTCTCCGAATTCCGTTGTCATTTATTGAAGTTCATCAAGATCGATTGTTTTAAATTTCCGAATGTATCCACTCTAGGAACTTTTCCGGCTTGTTTGATGTGCCGATATCAGAATACCTTTTTTAAAAAATGTTTGATGAAGAATCAAGAAAGCTGAATTAGAATTTTGAAAACATCGAAATCGTATATTATTTAAGAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAATGTTCCTTATCCCACT</pcr_primer_p1>
		<pcr_primer_p2>AAAATGCAAACGATTATTTTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCCATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTT</canonical_amplicon>
		<polymorphic_amplicon>GACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCCWTTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4749</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>114769</contig_pos>
        <strand>+</strand>
        <context>CACTTCTTTG[A/G]AATATAAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCACCTTTTTTGTGAGCCATTTGACACCCAATTCATGGTCCACTTCTTTG</left_flank>
        <right_flank>AATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCTAAGCAAAGAGGGTACGAAATTATCCTATCACCACTATTTCAGATAAATTCATTAGGAACAATTTAAAAACTTGTTTTCAGAAGTTGCACCATCAATTTCGAATTCCTCGAAAATCGCAAAGAAGCAGACAACCAGTACTTGTTAATGAAATTAATGCGTGATGAAACCGATTCTCCATTGTTTGATCTTCTCAAGTTCATTCTGATCTTTGATCCTGCCGAGAGACCATCGTTCGCTGAAGTTATCAGCCACAAGTTCTTTGCAGGCATTTAAATTCAAATTTTGTATTTCTTCCATGTTCACTTCTGTTTCATATTTTCTACCCGTTACACATTCATGTTTCAGTGACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCCATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTTGTGCTGTTTTTCAAAAACAAAAAACACTAGCTTTTTCGATTCATTCGAAAACTTTTTTAACGATGAAAACGCGGGTAGTACGTCTTACCAAAGTTCAAGGCAGAGAAGTTTTTTACGAAAAGTTTCCGTCTCTTGGAGTCGTCCCGCTTCTCACAGAAACTGTAGTTTTCTCCGAATTCCGTTGTCATTTATTGAAGTTCATCAAGATCGATTGTTTTAAATTTCCGAATGTATCCACTCTAGGAACTTTTCCGGCTTGTTTGATGTGCCGATATCAGAATACCTTTTTTAAAAAATGTTTGATGAAGAATCAAGAAAGCTGAATTAGAATTTTGAAAACATCGAAATCGTATATTATTTAAGAAAATGATTTTTAAGAAGAGTGTGAGGATGCTTCAAA</canonical>
            <polymorphic>GTCTAAGCAAAGAGGGTACGAAATTATCCTATCACCACTATTTCAGATAAATTCATTAGGAACAATTTAAAAACTTGTTTTCAGAAGTTGCACCATCAATTTCGAATTCCTCGAAAATCGCAAAGAAGCAGACAACCAGTACTTGTTAATGAAATTAATGCGTGATGAAACCGATTCTCCATTGTTTGATCTTCTCAAGTTCATTCTGATCTTTGATCCTGCCGAGAGACCATCGTTCGCTGAAGTTATCAGCCACAAGTTCTTTGCAGGCATTTAAATTCAAATTTTGTATTTCTTCCATGTTCACTTCTGTTTCATATTTTCTACCCGTTACACATTCATGTTTCAGTGACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCCATTTGACACCCAATTCATGGTCCACTTCTTTGRAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTTGTGCTGTTTTTCAAAAACAAAAAACACTAGCTTTTTCGATTCATTCGAAAACTTTTTTAACGATGAAAACGCGGGTAGTACGTCTTACCAAAGTTCAAGGCAGAGAAGTTTTTTACGAAAAGTTTCCGTCTCTTGGAGTCGTCCCGCTTCTCACAGAAACTGTAGTTTTCTCCGAATTCCGTTGTCATTTATTGAAGTTCATCAAGATCGATTGTTTTAAATTTCCGAATGTATCCACTCTAGGAACTTTTCCGGCTTGTTTGATGTGCCGATATCAGAATACCTTTTTTAAAAAATGTTTGATGAAGAATCAAGAAAGCTGAATTAGAATTTTGAAAACATCGAAATCGTATATTATTTAAGAAAATGATTTTTAAGAAGAGTGTGAGGATGCTTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>BstXI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACAATGTTCCTTATCCCACT</pcr_primer_p1>
		<pcr_primer_p2>AAAATGCAAACGATTATTTTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCCATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTT</canonical_amplicon>
		<polymorphic_amplicon>GACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCCATTTGACACCCAATTCATGGTCCACTTCTTTGRAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4750</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>114785</contig_pos>
        <strand>+</strand>
        <context>AAATTTGATG[C/T]TTTCAAGTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATG</left_flank>
        <right_flank>TTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACGAAATTATCCTATCACCACTATTTCAGATAAATTCATTAGGAACAATTTAAAAACTTGTTTTCAGAAGTTGCACCATCAATTTCGAATTCCTCGAAAATCGCAAAGAAGCAGACAACCAGTACTTGTTAATGAAATTAATGCGTGATGAAACCGATTCTCCATTGTTTGATCTTCTCAAGTTCATTCTGATCTTTGATCCTGCCGAGAGACCATCGTTCGCTGAAGTTATCAGCCACAAGTTCTTTGCAGGCATTTAAATTCAAATTTTGTATTTCTTCCATGTTCACTTCTGTTTCATATTTTCTACCCGTTACACATTCATGTTTCAGTGACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCCATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTTGTGCTGTTTTTCAAAAACAAAAAACACTAGCTTTTTCGATTCATTCGAAAACTTTTTTAACGATGAAAACGCGGGTAGTACGTCTTACCAAAGTTCAAGGCAGAGAAGTTTTTTACGAAAAGTTTCCGTCTCTTGGAGTCGTCCCGCTTCTCACAGAAACTGTAGTTTTCTCCGAATTCCGTTGTCATTTATTGAAGTTCATCAAGATCGATTGTTTTAAATTTCCGAATGTATCCACTCTAGGAACTTTTCCGGCTTGTTTGATGTGCCGATATCAGAATACCTTTTTTAAAAAATGTTTGATGAAGAATCAAGAAAGCTGAATTAGAATTTTGAAAACATCGAAATCGTATATTATTTAAGAAAATGATTTTTAAGAAGAGTGTGAGGATGCTTCAAAATTAACGAGTGCTTTG</canonical>
            <polymorphic>TACGAAATTATCCTATCACCACTATTTCAGATAAATTCATTAGGAACAATTTAAAAACTTGTTTTCAGAAGTTGCACCATCAATTTCGAATTCCTCGAAAATCGCAAAGAAGCAGACAACCAGTACTTGTTAATGAAATTAATGCGTGATGAAACCGATTCTCCATTGTTTGATCTTCTCAAGTTCATTCTGATCTTTGATCCTGCCGAGAGACCATCGTTCGCTGAAGTTATCAGCCACAAGTTCTTTGCAGGCATTTAAATTCAAATTTTGTATTTCTTCCATGTTCACTTCTGTTTCATATTTTCTACCCGTTACACATTCATGTTTCAGTGACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCCATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGYTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTTGTGCTGTTTTTCAAAAACAAAAAACACTAGCTTTTTCGATTCATTCGAAAACTTTTTTAACGATGAAAACGCGGGTAGTACGTCTTACCAAAGTTCAAGGCAGAGAAGTTTTTTACGAAAAGTTTCCGTCTCTTGGAGTCGTCCCGCTTCTCACAGAAACTGTAGTTTTCTCCGAATTCCGTTGTCATTTATTGAAGTTCATCAAGATCGATTGTTTTAAATTTCCGAATGTATCCACTCTAGGAACTTTTCCGGCTTGTTTGATGTGCCGATATCAGAATACCTTTTTTAAAAAATGTTTGATGAAGAATCAAGAAAGCTGAATTAGAATTTTGAAAACATCGAAATCGTATATTATTTAAGAAAATGATTTTTAAGAAGAGTGTGAGGATGCTTCAAAATTAACGAGTGCTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAATGTTCCTTATCCCACT</pcr_primer_p1>
		<pcr_primer_p2>AAAATGCAAACGATTATTTTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCCATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTT</canonical_amplicon>
		<polymorphic_amplicon>GACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCCATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGYTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4751</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>114796</contig_pos>
        <strand>+</strand>
        <context>TTTCAAGTTG[C/T]TGGTTTTGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTG</left_flank>
        <right_flank>TGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTATCACCACTATTTCAGATAAATTCATTAGGAACAATTTAAAAACTTGTTTTCAGAAGTTGCACCATCAATTTCGAATTCCTCGAAAATCGCAAAGAAGCAGACAACCAGTACTTGTTAATGAAATTAATGCGTGATGAAACCGATTCTCCATTGTTTGATCTTCTCAAGTTCATTCTGATCTTTGATCCTGCCGAGAGACCATCGTTCGCTGAAGTTATCAGCCACAAGTTCTTTGCAGGCATTTAAATTCAAATTTTGTATTTCTTCCATGTTCACTTCTGTTTCATATTTTCTACCCGTTACACATTCATGTTTCAGTGACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCCATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTTGTGCTGTTTTTCAAAAACAAAAAACACTAGCTTTTTCGATTCATTCGAAAACTTTTTTAACGATGAAAACGCGGGTAGTACGTCTTACCAAAGTTCAAGGCAGAGAAGTTTTTTACGAAAAGTTTCCGTCTCTTGGAGTCGTCCCGCTTCTCACAGAAACTGTAGTTTTCTCCGAATTCCGTTGTCATTTATTGAAGTTCATCAAGATCGATTGTTTTAAATTTCCGAATGTATCCACTCTAGGAACTTTTCCGGCTTGTTTGATGTGCCGATATCAGAATACCTTTTTTAAAAAATGTTTGATGAAGAATCAAGAAAGCTGAATTAGAATTTTGAAAACATCGAAATCGTATATTATTTAAGAAAATGATTTTTAAGAAGAGTGTGAGGATGCTTCAAAATTAACGAGTGCTTTGAAAGTATGTAG</canonical>
            <polymorphic>CCTATCACCACTATTTCAGATAAATTCATTAGGAACAATTTAAAAACTTGTTTTCAGAAGTTGCACCATCAATTTCGAATTCCTCGAAAATCGCAAAGAAGCAGACAACCAGTACTTGTTAATGAAATTAATGCGTGATGAAACCGATTCTCCATTGTTTGATCTTCTCAAGTTCATTCTGATCTTTGATCCTGCCGAGAGACCATCGTTCGCTGAAGTTATCAGCCACAAGTTCTTTGCAGGCATTTAAATTCAAATTTTGTATTTCTTCCATGTTCACTTCTGTTTCATATTTTCTACCCGTTACACATTCATGTTTCAGTGACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCCATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTGYTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTTGTGCTGTTTTTCAAAAACAAAAAACACTAGCTTTTTCGATTCATTCGAAAACTTTTTTAACGATGAAAACGCGGGTAGTACGTCTTACCAAAGTTCAAGGCAGAGAAGTTTTTTACGAAAAGTTTCCGTCTCTTGGAGTCGTCCCGCTTCTCACAGAAACTGTAGTTTTCTCCGAATTCCGTTGTCATTTATTGAAGTTCATCAAGATCGATTGTTTTAAATTTCCGAATGTATCCACTCTAGGAACTTTTCCGGCTTGTTTGATGTGCCGATATCAGAATACCTTTTTTAAAAAATGTTTGATGAAGAATCAAGAAAGCTGAATTAGAATTTTGAAAACATCGAAATCGTATATTATTTAAGAAAATGATTTTTAAGAAGAGTGTGAGGATGCTTCAAAATTAACGAGTGCTTTGAAAGTATGTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAATGTTCCTTATCCCACT</pcr_primer_p1>
		<pcr_primer_p2>AAAATGCAAACGATTATTTTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCCATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTT</canonical_amplicon>
		<polymorphic_amplicon>GACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCCATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTGYTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4752</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>114812</contig_pos>
        <strand>+</strand>
        <context>TTGTTTCATA[A/T]TTTCATCTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCTTTGGAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATA</left_flank>
        <right_flank>TTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGATAAATTCATTAGGAACAATTTAAAAACTTGTTTTCAGAAGTTGCACCATCAATTTCGAATTCCTCGAAAATCGCAAAGAAGCAGACAACCAGTACTTGTTAATGAAATTAATGCGTGATGAAACCGATTCTCCATTGTTTGATCTTCTCAAGTTCATTCTGATCTTTGATCCTGCCGAGAGACCATCGTTCGCTGAAGTTATCAGCCACAAGTTCTTTGCAGGCATTTAAATTCAAATTTTGTATTTCTTCCATGTTCACTTCTGTTTCATATTTTCTACCCGTTACACATTCATGTTTCAGTGACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCCATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTTGTGCTGTTTTTCAAAAACAAAAAACACTAGCTTTTTCGATTCATTCGAAAACTTTTTTAACGATGAAAACGCGGGTAGTACGTCTTACCAAAGTTCAAGGCAGAGAAGTTTTTTACGAAAAGTTTCCGTCTCTTGGAGTCGTCCCGCTTCTCACAGAAACTGTAGTTTTCTCCGAATTCCGTTGTCATTTATTGAAGTTCATCAAGATCGATTGTTTTAAATTTCCGAATGTATCCACTCTAGGAACTTTTCCGGCTTGTTTGATGTGCCGATATCAGAATACCTTTTTTAAAAAATGTTTGATGAAGAATCAAGAAAGCTGAATTAGAATTTTGAAAACATCGAAATCGTATATTATTTAAGAAAATGATTTTTAAGAAGAGTGTGAGGATGCTTCAAAATTAACGAGTGCTTTGAAAGTATGTAGGAATGATCGTAATAGG</canonical>
            <polymorphic>CAGATAAATTCATTAGGAACAATTTAAAAACTTGTTTTCAGAAGTTGCACCATCAATTTCGAATTCCTCGAAAATCGCAAAGAAGCAGACAACCAGTACTTGTTAATGAAATTAATGCGTGATGAAACCGATTCTCCATTGTTTGATCTTCTCAAGTTCATTCTGATCTTTGATCCTGCCGAGAGACCATCGTTCGCTGAAGTTATCAGCCACAAGTTCTTTGCAGGCATTTAAATTCAAATTTTGTATTTCTTCCATGTTCACTTCTGTTTCATATTTTCTACCCGTTACACATTCATGTTTCAGTGACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCCATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAWTTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTTGTGCTGTTTTTCAAAAACAAAAAACACTAGCTTTTTCGATTCATTCGAAAACTTTTTTAACGATGAAAACGCGGGTAGTACGTCTTACCAAAGTTCAAGGCAGAGAAGTTTTTTACGAAAAGTTTCCGTCTCTTGGAGTCGTCCCGCTTCTCACAGAAACTGTAGTTTTCTCCGAATTCCGTTGTCATTTATTGAAGTTCATCAAGATCGATTGTTTTAAATTTCCGAATGTATCCACTCTAGGAACTTTTCCGGCTTGTTTGATGTGCCGATATCAGAATACCTTTTTTAAAAAATGTTTGATGAAGAATCAAGAAAGCTGAATTAGAATTTTGAAAACATCGAAATCGTATATTATTTAAGAAAATGATTTTTAAGAAGAGTGTGAGGATGCTTCAAAATTAACGAGTGCTTTGAAAGTATGTAGGAATGATCGTAATAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>207 196 124 103 71 48 45 44 35 34 28 26 14 7 6 6 6</canonical_bands>
                <polymorphic_bands>207 196 124 103 71 61 48 45 44 34 28 14 7 6 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACAATGTTCCTTATCCCACT</pcr_primer_p1>
		<pcr_primer_p2>AAAATGCAAACGATTATTTTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCCATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAATTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTT</canonical_amplicon>
		<polymorphic_amplicon>GACAATGTTCCTTATCCCACTGACGACACTCAACTTATTTTTCGTGTGTTTAGCACTACCATTCTTCTCAAAATCTCAATAGTACGAGTCTTTTTCAAATCACCTTTTTTGTGAGCCATTTGACACCCAATTCATGGTCCACTTCTTTGGAATATAAATTTGATGCTTTCAAGTTGTTGGTTTTGTTTCATAWTTTCATCTTTCAGAAACAAAAAACAATTTTGACTCTTAAAATAATCGTTTGCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4753</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>116546</contig_pos>
        <strand>+</strand>
        <context>AGTTGATGTG[A/G]GGGTTTTGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACGGATTCAACAATTTTTCTGACAAATGCAACGTTAGCAAGTTGATGTG</left_flank>
        <right_flank>GGGTTTTGAGCAATTCTCTGATATGTCTGAAAATTGAATTGATAGAGTTC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTGGACCAGCTTATAGATTTCTGGGATTCCAGGTGTCGAATGGGGCAAAGAATTTCCATAATCAATTAATTTAATTTGAAGATCATTCATTGTGATGCTCGGTTGAGCCAAGTTCGTATCCACATCGTATTTGACGGTGCTCATAAATGTAACGTTGGCAGATTTGATGTCCAAATGATAGATTTTGAGCTTTTCCAAGTGGAACAATGCCTCTCCAACTTGTCGACCAATACTTTTAATAGCGTTGATTGAGAACGTAGGCGATTGGACATTACCAATATCTCTTTTAGCTCCTGAAAATACGGTTTATAGAACGATTAATCAGTTTAATTTCCAATCCAATATATTTTTGAGATAAGGACTCTACCGACCAACTCACTCATCATAATATCTTTGATGGACGGTCCACATGCTTCAGTGATAAAAACGTCATCTCTATAACCTGGCGACGGATTCAACAATTTTTCTGACAAATGCAACGTTAGCAAGTTGATGTGGGGGTTTTGAGCAATTCTCTGATATGTCTGAAAATTGAATTGATAGAGTTCTTTTCATCAAACATCAACTTGATGCAACAACATTCAGAACGGTAAAAAACTTCAACAACAAAAAGGTGTGGTATTTTTTTATGTAGTACTATATTTTCCATAGTTCAGAACACTCGTTGAGTCAAATTCGATACTCGAACTCTACAAATTTTGCTTACCTCCAGCTCGCGTTGAATTGAATGACGACTAGCTTTTTCTGTTAGCACTTTTGCCGCGTATTGGTGACCATTCCGATCCCTGACGCGGAATACAACGCTGGAACCGCCTTGACCAAACACTCCGCGAAGGAAATCTGAAAATTTTGTTTGTGTCAATGAATTTTCAATCTGTTCACTCACATTCTTCATAATTGGTAAGTTGAACTGAAACAGGGAGGGCTCTATGGTCCACGCCTGGTGGCTCATAGTCATATCCAGGAGATTGTTGGTCGTCTTGCTGCATTCTTGAATT</canonical>
            <polymorphic>GGTTGGACCAGCTTATAGATTTCTGGGATTCCAGGTGTCGAATGGGGCAAAGAATTTCCATAATCAATTAATTTAATTTGAAGATCATTCATTGTGATGCTCGGTTGAGCCAAGTTCGTATCCACATCGTATTTGACGGTGCTCATAAATGTAACGTTGGCAGATTTGATGTCCAAATGATAGATTTTGAGCTTTTCCAAGTGGAACAATGCCTCTCCAACTTGTCGACCAATACTTTTAATAGCGTTGATTGAGAACGTAGGCGATTGGACATTACCAATATCTCTTTTAGCTCCTGAAAATACGGTTTATAGAACGATTAATCAGTTTAATTTCCAATCCAATATATTTTTGAGATAAGGACTCTACCGACCAACTCACTCATCATAATATCTTTGATGGACGGTCCACATGCTTCAGTGATAAAAACGTCATCTCTATAACCTGGCGACGGATTCAACAATTTTTCTGACAAATGCAACGTTAGCAAGTTGATGTGRGGGTTTTGAGCAATTCTCTGATATGTCTGAAAATTGAATTGATAGAGTTCTTTTCATCAAACATCAACTTGATGCAACAACATTCAGAACGGTAAAAAACTTCAACAACAAAAAGGTGTGGTATTTTTTTATGTAGTACTATATTTTCCATAGTTCAGAACACTCGTTGAGTCAAATTCGATACTCGAACTCTACAAATTTTGCTTACCTCCAGCTCGCGTTGAATTGAATGACGACTAGCTTTTTCTGTTAGCACTTTTGCCGCGTATTGGTGACCATTCCGATCCCTGACGCGGAATACAACGCTGGAACCGCCTTGACCAAACACTCCGCGAAGGAAATCTGAAAATTTTGTTTGTGTCAATGAATTTTCAATCTGTTCACTCACATTCTTCATAATTGGTAAGTTGAACTGAAACAGGGAGGGCTCTATGGTCCACGCCTGGTGGCTCATAGTCATATCCAGGAGATTGTTGGTCGTCTTGCTGCATTCTTGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGTTTAATTTCCAATCCAATA</pcr_primer_p1>
		<pcr_primer_p2>TTGATGTTTGATGAAAAGAACTC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TCAGTTTAATTTCCAATCCAATATATTTTTGAGATAAGGACTCTACCGACCAACTCACTCATCATAATATCTTTGATGGACGGTCCACATGCTTCAGTGATAAAAACGTCATCTCTATAACCTGGCGACGGATTCAACAATTTTTCTGACAAATGCAACGTTAGCAAGTTGATGTGGGGGTTTTGAGCAATTCTCTGATATGTCTGAAAATTGAATTGATAGAGTTCTTTTCATCAAACATCAA</canonical_amplicon>
		<polymorphic_amplicon>TCAGTTTAATTTCCAATCCAATATATTTTTGAGATAAGGACTCTACCGACCAACTCACTCATCATAATATCTTTGATGGACGGTCCACATGCTTCAGTGATAAAAACGTCATCTCTATAACCTGGCGACGGATTCAACAATTTTTCTGACAAATGCAACGTTAGCAAGTTGATGTGRGGGTTTTGAGCAATTCTCTGATATGTCTGAAAATTGAATTGATAGAGTTCTTTTCATCAAACATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4754</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>116196</contig_pos>
        <strand>+</strand>
        <context>TGCTCATAAA[A/T]GTAACGTTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCGGTTGAGCCAAGTTCGTATCCACATCGTATTTGACGGTGCTCATAAA</left_flank>
        <right_flank>GTAACGTTGGCAGATTTGATGTCCAAATGATAGATTTTGAGCTTTTCCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCATATTTTAGAACAGTTTCAAAAAAAAAAATAAATAAGAAGTATGTCCTTACCTTCCTTGTCTGGACACCTCAATCATTTCCTCTGGAATGGTTGCATTCATTCTATTAACAATCAACTCAAATTGCGATTGTTGTATTTCGATCTGAGTTGCGCCGGTTCTAGACATAAAAATTGATTTTCCGAGATACATTTGGCCCATCAGGTATCCCATGGACCAGACATCAGTCTTTTCGCTGTGAGGAATTCCTGAAAAATTCAAATACAGAGTATTCACAAAACAAACTCACACATAAAAATGTTTTTAAAAACTCACCCATAAAAATTTCTGGTGCACGCAAGTTTTGTGGTTGGACCAGCTTATAGATTTCTGGGATTCCAGGTGTCGAATGGGGCAAAGAATTTCCATAATCAATTAATTTAATTTGAAGATCATTCATTGTGATGCTCGGTTGAGCCAAGTTCGTATCCACATCGTATTTGACGGTGCTCATAAATGTAACGTTGGCAGATTTGATGTCCAAATGATAGATTTTGAGCTTTTCCAAGTGGAACAATGCCTCTCCAACTTGTCGACCAATACTTTTAATAGCGTTGATTGAGAACGTAGGCGATTGGACATTACCAATATCTCTTTTAGCTCCTGAAAATACGGTTTATAGAACGATTAATCAGTTTAATTTCCAATCCAATATATTTTTGAGATAAGGACTCTACCGACCAACTCACTCATCATAATATCTTTGATGGACGGTCCACATGCTTCAGTGATAAAAACGTCATCTCTATAACCTGGCGACGGATTCAACAATTTTTCTGACAAATGCAACGTTAGCAAGTTGATGTGGGGGTTTTGAGCAATTCTCTGATATGTCTGAAAATTGAATTGATAGAGTTCTTTTCATCAAACATCAACTTGATGCAACAACATTCAGAACGGTAAAAAACTTCAACAACAAAAAGGTGTGGTATTTTTTTATGTAGTACTATATTTTCCA</canonical>
            <polymorphic>AATCATATTTTAGAACAGTTTCAAAAAAAAAAATAAATAAGAAGTATGTCCTTACCTTCCTTGTCTGGACACCTCAATCATTTCCTCTGGAATGGTTGCATTCATTCTATTAACAATCAACTCAAATTGCGATTGTTGTATTTCGATCTGAGTTGCGCCGGTTCTAGACATAAAAATTGATTTTCCGAGATACATTTGGCCCATCAGGTATCCCATGGACCAGACATCAGTCTTTTCGCTGTGAGGAATTCCTGAAAAATTCAAATACAGAGTATTCACAAAACAAACTCACACATAAAAATGTTTTTAAAAACTCACCCATAAAAATTTCTGGTGCACGCAAGTTTTGTGGTTGGACCAGCTTATAGATTTCTGGGATTCCAGGTGTCGAATGGGGCAAAGAATTTCCATAATCAATTAATTTAATTTGAAGATCATTCATTGTGATGCTCGGTTGAGCCAAGTTCGTATCCACATCGTATTTGACGGTGCTCATAAAWGTAACGTTGGCAGATTTGATGTCCAAATGATAGATTTTGAGCTTTTCCAAGTGGAACAATGCCTCTCCAACTTGTCGACCAATACTTTTAATAGCGTTGATTGAGAACGTAGGCGATTGGACATTACCAATATCTCTTTTAGCTCCTGAAAATACGGTTTATAGAACGATTAATCAGTTTAATTTCCAATCCAATATATTTTTGAGATAAGGACTCTACCGACCAACTCACTCATCATAATATCTTTGATGGACGGTCCACATGCTTCAGTGATAAAAACGTCATCTCTATAACCTGGCGACGGATTCAACAATTTTTCTGACAAATGCAACGTTAGCAAGTTGATGTGGGGGTTTTGAGCAATTCTCTGATATGTCTGAAAATTGAATTGATAGAGTTCTTTTCATCAAACATCAACTTGATGCAACAACATTCAGAACGGTAAAAAACTTCAACAACAAAAAGGTGTGGTATTTTTTTATGTAGTACTATATTTTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGAAGATCATTCATTGTGAT</pcr_primer_p1>
		<pcr_primer_p2>CGTTCTATAAACCGTATTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATTTGAAGATCATTCATTGTGATGCTCGGTTGAGCCAAGTTCGTATCCACATCGTATTTGACGGTGCTCATAAATGTAACGTTGGCAGATTTGATGTCCAAATGATAGATTTTGAGCTTTTCCAAGTGGAACAATGCCTCTCCAACTTGTCGACCAATACTTTTAATAGCGTTGATTGAGAACGTAGGCGATTGGACATTACCAATATCTCTTTTAGCTCCTGAAAATACGGTTTATAGAACG</canonical_amplicon>
		<polymorphic_amplicon>ATTTGAAGATCATTCATTGTGATGCTCGGTTGAGCCAAGTTCGTATCCACATCGTATTTGACGGTGCTCATAAAWGTAACGTTGGCAGATTTGATGTCCAAATGATAGATTTTGAGCTTTTCCAAGTGGAACAATGCCTCTCCAACTTGTCGACCAATACTTTTAATAGCGTTGATTGAGAACGTAGGCGATTGGACATTACCAATATCTCTTTTAGCTCCTGAAAATACGGTTTATAGAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4755</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>21374</contig_pos>
        <strand>+</strand>
        <context>ATCTGACCTC[A/T]TYYTTCCCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGATTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCTC</left_flank>
        <right_flank>TCCTTCCCGTCCGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTGGAAAATACAACTTACAGTCACAAAAACACTAAAAACTTTCACTATGTCTTTCAAAAATTCGCTCTCAAAGTGAGAAATCGGTATTTTCCTGAAATAGGTCAGCTTTTTTCAAACATCTTCATTATTTTTTCGATTTTCTATTAGCTTGACCATTTTTTCACAACAATGTGAACGAAATGACTAGATTTCTACAGAAAATATTGTAAAAAAGCATTGGCGACAAAAAACCAACAAAATAACAATAATTAGTGAGCAAAAGTGTTTTTAACTTTCCATAAGGAGTAATTTTGCTTTTTTTGTTTCTTATGAGCTTTTTTCCTTTTTTTTTTCGGGAATCTGATCGAAATTCAGTTCGAAACTGTTTTTGAACGAAAAAACTAAATTTGAATGTCGCGCGAGATTTTGTTCAACGGGGCGCACTTTCTGACGATCGTTTGCAGCCGTCGATTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCTCTTCCTTCCCGTCCGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAACAGAAGGTCGCTGGTTCGATTCCAGCATGAGGCACCGAACTTCTTTTTTGTTTTTTATTTTATTTATAAGAGGTAGGGAAGACGATTTCGAGGAAATAATAAAATTTTGAGATCTCTGAAAAGAAGAAATTGAAAAATGCACCTGTCTTTGACTAATTTAGCATTTAATTCAGGAAGTGACTCTTCATTCATTCTTCTTTTCGTCAGAGTCTCAAAAATTACGTAGCCAAATTCTTGCTGAATGAATTTCTTAATTTTCAGCTGTTCATAGTAAAACTTTGGAGTATAAAATGGAAAGTGGGACTCTAGAATTTTTCATCAAACCCACAAAACTCCGCAATGTTCCATATTCCCACATATTCTGATAATTTGCTTTCTGGACCGCCTGATATTTTGAAAAGAAGGCAAAATTTGAGGATTCAAAGAAGACAATTGTGATTTTCATTGAAT</canonical>
            <polymorphic>CATTGGAAAATACAACTTACAGTCACAAAAACACTAAAAACTTTCACTATGTCTTTCAAAAATTCGCTCTCAAAGTGAGAAATCGGTATTTTCCTGAAATAGGTCAGCTTTTTTCAAACATCTTCATTATTTTTTCGATTTTCTATTAGCTTGACCATTTTTTCACAACAATGTGAACGAAATGACTAGATTTCTACAGAAAATATTGTAAAAAAGCATTGGCGACAAAAAACCAACAAAATAACAATAATTAGTGAGCAAAAGTGTTTTTAACTTTCCATAAGGAGTAATTTTGCTTTTTTTGTTTCTTATGAGCTTTTTTCCTTTTTTTTTTCGGGAATCTGATCGAAATTCAGTTCGAAACTGTTTTTGAACGAAAAAACTAAATTTGAATGTCGCGCGAGATTTTGTTCAACGGGGCGCACTTTCTGACGATCGTTTGCAGCCGTCGATTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCTCWTCCTTCCCGTCCGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAACAGAAGGTCGCTGGTTCGATTCCAGCATGAGGCACCGAACTTCTTTTTTGTTTTTTATTTTATTTATAAGAGGTAGGGAAGACGATTTCGAGGAAATAATAAAATTTTGAGATCTCTGAAAAGAAGAAATTGAAAAATGCACCTGTCTTTGACTAATTTAGCATTTAATTCAGGAAGTGACTCTTCATTCATTCTTCTTTTCGTCAGAGTCTCAAAAATTACGTAGCCAAATTCTTGCTGAATGAATTTCTTAATTTTCAGCTGTTCATAGTAAAACTTTGGAGTATAAAATGGAAAGTGGGACTCTAGAATTTTTCATCAAACCCACAAAACTCCGCAATGTTCCATATTCCCACATATTCTGATAATTTGCTTTCTGGACCGCCTGATATTTTGAAAAGAAGGCAAAATTTGAGGATTCAAAGAAGACAATTGTGATTTTCATTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTGAGAACGGGCTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CGTCTTCCCTACCTCTTATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>820</pcr_amplicon_size>
		<canonical_amplicon>CTTCCTTCCCGTCCGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAACAGAAGGTCGCTGGTTCGATTCCAGCATGAGGCACCGAACTTCTTTTTTGTTTTTTATTTTATTTATAAGAGGTAGGGAAGACG</canonical_amplicon>
		<polymorphic_amplicon>CWTCCTTCCCGTCCGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAACAGAAGGTCGCTGGTTCGATTCCAGCATGAGGCACCGAACTTCTTTTTTGTTTTTTATTTTATTTATAAGAGGTAGGGAAGACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4756</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>21376</contig_pos>
        <strand>+</strand>
        <context>CTGACCTCWT[C/T]YTTCCCGTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCTCTT</left_flank>
        <right_flank>CTTCCCGTCCGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAACA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGAAAATACAACTTACAGTCACAAAAACACTAAAAACTTTCACTATGTCTTTCAAAAATTCGCTCTCAAAGTGAGAAATCGGTATTTTCCTGAAATAGGTCAGCTTTTTTCAAACATCTTCATTATTTTTTCGATTTTCTATTAGCTTGACCATTTTTTCACAACAATGTGAACGAAATGACTAGATTTCTACAGAAAATATTGTAAAAAAGCATTGGCGACAAAAAACCAACAAAATAACAATAATTAGTGAGCAAAAGTGTTTTTAACTTTCCATAAGGAGTAATTTTGCTTTTTTTGTTTCTTATGAGCTTTTTTCCTTTTTTTTTTCGGGAATCTGATCGAAATTCAGTTCGAAACTGTTTTTGAACGAAAAAACTAAATTTGAATGTCGCGCGAGATTTTGTTCAACGGGGCGCACTTTCTGACGATCGTTTGCAGCCGTCGATTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCTCTTCCTTCCCGTCCGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAACAGAAGGTCGCTGGTTCGATTCCAGCATGAGGCACCGAACTTCTTTTTTGTTTTTTATTTTATTTATAAGAGGTAGGGAAGACGATTTCGAGGAAATAATAAAATTTTGAGATCTCTGAAAAGAAGAAATTGAAAAATGCACCTGTCTTTGACTAATTTAGCATTTAATTCAGGAAGTGACTCTTCATTCATTCTTCTTTTCGTCAGAGTCTCAAAAATTACGTAGCCAAATTCTTGCTGAATGAATTTCTTAATTTTCAGCTGTTCATAGTAAAACTTTGGAGTATAAAATGGAAAGTGGGACTCTAGAATTTTTCATCAAACCCACAAAACTCCGCAATGTTCCATATTCCCACATATTCTGATAATTTGCTTTCTGGACCGCCTGATATTTTGAAAAGAAGGCAAAATTTGAGGATTCAAAGAAGACAATTGTGATTTTCATTGAATAT</canonical>
            <polymorphic>TTGGAAAATACAACTTACAGTCACAAAAACACTAAAAACTTTCACTATGTCTTTCAAAAATTCGCTCTCAAAGTGAGAAATCGGTATTTTCCTGAAATAGGTCAGCTTTTTTCAAACATCTTCATTATTTTTTCGATTTTCTATTAGCTTGACCATTTTTTCACAACAATGTGAACGAAATGACTAGATTTCTACAGAAAATATTGTAAAAAAGCATTGGCGACAAAAAACCAACAAAATAACAATAATTAGTGAGCAAAAGTGTTTTTAACTTTCCATAAGGAGTAATTTTGCTTTTTTTGTTTCTTATGAGCTTTTTTCCTTTTTTTTTTCGGGAATCTGATCGAAATTCAGTTCGAAACTGTTTTTGAACGAAAAAACTAAATTTGAATGTCGCGCGAGATTTTGTTCAACGGGGCGCACTTTCTGACGATCGTTTGCAGCCGTCGATTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCTCTTYCTTCCCGTCCGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAACAGAAGGTCGCTGGTTCGATTCCAGCATGAGGCACCGAACTTCTTTTTTGTTTTTTATTTTATTTATAAGAGGTAGGGAAGACGATTTCGAGGAAATAATAAAATTTTGAGATCTCTGAAAAGAAGAAATTGAAAAATGCACCTGTCTTTGACTAATTTAGCATTTAATTCAGGAAGTGACTCTTCATTCATTCTTCTTTTCGTCAGAGTCTCAAAAATTACGTAGCCAAATTCTTGCTGAATGAATTTCTTAATTTTCAGCTGTTCATAGTAAAACTTTGGAGTATAAAATGGAAAGTGGGACTCTAGAATTTTTCATCAAACCCACAAAACTCCGCAATGTTCCATATTCCCACATATTCTGATAATTTGCTTTCTGGACCGCCTGATATTTTGAAAAGAAGGCAAAATTTGAGGATTCAAAGAAGACAATTGTGATTTTCATTGAATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTGAGAACGGGCTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CGTCTTCCCTACCTCTTATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>820</pcr_amplicon_size>
		<canonical_amplicon>TCCTTCCCGTCCGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAACAGAAGGTCGCTGGTTCGATTCCAGCATGAGGCACCGAACTTCTTTTTTGTTTTTTATTTTATTTATAAGAGGTAGGGAAGACG</canonical_amplicon>
		<polymorphic_amplicon>TYCTTCCCGTCCGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAACAGAAGGTCGCTGGTTCGATTCCAGCATGAGGCACCGAACTTCTTTTTTGTTTTTTATTTTATTTATAAGAGGTAGGGAAGACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4757</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>21377</contig_pos>
        <strand>+</strand>
        <context>TGACCTCWTY[C/T]TTCCCGTCCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCTCTTC</left_flank>
        <right_flank>TTCCCGTCCGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAACAG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAAAATACAACTTACAGTCACAAAAACACTAAAAACTTTCACTATGTCTTTCAAAAATTCGCTCTCAAAGTGAGAAATCGGTATTTTCCTGAAATAGGTCAGCTTTTTTCAAACATCTTCATTATTTTTTCGATTTTCTATTAGCTTGACCATTTTTTCACAACAATGTGAACGAAATGACTAGATTTCTACAGAAAATATTGTAAAAAAGCATTGGCGACAAAAAACCAACAAAATAACAATAATTAGTGAGCAAAAGTGTTTTTAACTTTCCATAAGGAGTAATTTTGCTTTTTTTGTTTCTTATGAGCTTTTTTCCTTTTTTTTTTCGGGAATCTGATCGAAATTCAGTTCGAAACTGTTTTTGAACGAAAAAACTAAATTTGAATGTCGCGCGAGATTTTGTTCAACGGGGCGCACTTTCTGACGATCGTTTGCAGCCGTCGATTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCTCTTCCTTCCCGTCCGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAACAGAAGGTCGCTGGTTCGATTCCAGCATGAGGCACCGAACTTCTTTTTTGTTTTTTATTTTATTTATAAGAGGTAGGGAAGACGATTTCGAGGAAATAATAAAATTTTGAGATCTCTGAAAAGAAGAAATTGAAAAATGCACCTGTCTTTGACTAATTTAGCATTTAATTCAGGAAGTGACTCTTCATTCATTCTTCTTTTCGTCAGAGTCTCAAAAATTACGTAGCCAAATTCTTGCTGAATGAATTTCTTAATTTTCAGCTGTTCATAGTAAAACTTTGGAGTATAAAATGGAAAGTGGGACTCTAGAATTTTTCATCAAACCCACAAAACTCCGCAATGTTCCATATTCCCACATATTCTGATAATTTGCTTTCTGGACCGCCTGATATTTTGAAAAGAAGGCAAAATTTGAGGATTCAAAGAAGACAATTGTGATTTTCATTGAATATT</canonical>
            <polymorphic>TGGAAAATACAACTTACAGTCACAAAAACACTAAAAACTTTCACTATGTCTTTCAAAAATTCGCTCTCAAAGTGAGAAATCGGTATTTTCCTGAAATAGGTCAGCTTTTTTCAAACATCTTCATTATTTTTTCGATTTTCTATTAGCTTGACCATTTTTTCACAACAATGTGAACGAAATGACTAGATTTCTACAGAAAATATTGTAAAAAAGCATTGGCGACAAAAAACCAACAAAATAACAATAATTAGTGAGCAAAAGTGTTTTTAACTTTCCATAAGGAGTAATTTTGCTTTTTTTGTTTCTTATGAGCTTTTTTCCTTTTTTTTTTCGGGAATCTGATCGAAATTCAGTTCGAAACTGTTTTTGAACGAAAAAACTAAATTTGAATGTCGCGCGAGATTTTGTTCAACGGGGCGCACTTTCTGACGATCGTTTGCAGCCGTCGATTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCTCTTCYTTCCCGTCCGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAACAGAAGGTCGCTGGTTCGATTCCAGCATGAGGCACCGAACTTCTTTTTTGTTTTTTATTTTATTTATAAGAGGTAGGGAAGACGATTTCGAGGAAATAATAAAATTTTGAGATCTCTGAAAAGAAGAAATTGAAAAATGCACCTGTCTTTGACTAATTTAGCATTTAATTCAGGAAGTGACTCTTCATTCATTCTTCTTTTCGTCAGAGTCTCAAAAATTACGTAGCCAAATTCTTGCTGAATGAATTTCTTAATTTTCAGCTGTTCATAGTAAAACTTTGGAGTATAAAATGGAAAGTGGGACTCTAGAATTTTTCATCAAACCCACAAAACTCCGCAATGTTCCATATTCCCACATATTCTGATAATTTGCTTTCTGGACCGCCTGATATTTTGAAAAGAAGGCAAAATTTGAGGATTCAAAGAAGACAATTGTGATTTTCATTGAATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTGAGAACGGGCTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CGTCTTCCCTACCTCTTATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>820</pcr_amplicon_size>
		<canonical_amplicon>CCTTCCCGTCCGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAACAGAAGGTCGCTGGTTCGATTCCAGCATGAGGCACCGAACTTCTTTTTTGTTTTTTATTTTATTTATAAGAGGTAGGGAAGACG</canonical_amplicon>
		<polymorphic_amplicon>CYTTCCCGTCCGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAACAGAAGGTCGCTGGTTCGATTCCAGCATGAGGCACCGAACTTCTTTTTTGTTTTTTATTTTATTTATAAGAGGTAGGGAAGACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4758</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>22605</contig_pos>
        <strand>+</strand>
        <context>GAAAATAAAC[A/C]ATTTTCAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAGGGCAAAAATTGCCAGTAGCAGCCGAACTACCGCTGAGAAAATAAAC</left_flank>
        <right_flank>ATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATAT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAATTTTGAGATTCTGAGATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGACTTTTTAACTTTTATTTGCCTAGCGTTCTAATTTGTTACCTTTTAATATAACCTCTGTATGTCGGAGTACTGATAATTAAAATAATTGCATTTACAGTCGAATGAAGGGCAAAAATTGCCAGTAGCAGCCGAACTACCGCTGAGAAAATAAACCATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCTCATTTATATTGGTTCCCGTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAGAAATTGAGATAATTGAGCTCAACACTGACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATCAAAAACTCACCCTGTGAATGTTCATAATGACTGATAATTGCTATCACTAATCCAACAGGAGGCAGCAGACACATTGATGACGTGGCAAGCTGAGCAATCAGACTAATCACAGCCGCTTGGTGTCTTTGGAAATTTTTAGCAGAGATTTTCTTCTTGACGCCGGATAATAATGTAAAAATATCAATGATAAGGAAAGAGAAAAATAATGAAAATAAAGTAACTGCGAAGAAGCAACCAACTGCGATGAGTTTGAAG</canonical>
            <polymorphic>TTAATTTTGAGATTCTGAGATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGACTTTTTAACTTTTATTTGCCTAGCGTTCTAATTTGTTACCTTTTAATATAACCTCTGTATGTCGGAGTACTGATAATTAAAATAATTGCATTTACAGTCGAATGAAGGGCAAAAATTGCCAGTAGCAGCCGAACTACCGCTGAGAAAATAAACMATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCTCATTTATATTGGTTCCCGTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAGAAATTGAGATAATTGAGCTCAACACTGACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATCAAAAACTCACCCTGTGAATGTTCATAATGACTGATAATTGCTATCACTAATCCAACAGGAGGCAGCAGACACATTGATGACGTGGCAAGCTGAGCAATCAGACTAATCACAGCCGCTTGGTGTCTTTGGAAATTTTTAGCAGAGATTTTCTTCTTGACGCCGGATAATAATGTAAAAATATCAATGATAAGGAAAGAGAAAAATAATGAAAATAAAGTAACTGCGAAGAAGCAACCAACTGCGATGAGTTTGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGTATGTCGGAGTACTGATAAT</pcr_primer_p1>
		<pcr_primer_p2>ACAGGGTGAGTTTTTGATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>361</pcr_amplicon_size>
		<canonical_amplicon>TCTGTATGTCGGAGTACTGATAATTAAAATAATTGCATTTACAGTCGAATGAAGGGCAAAAATTGCCAGTAGCAGCCGAACTACCGCTGAGAAAATAAACCATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCTCATTTATATTGGTTCCCGTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAGAAATTGAGATAATTGAGCTCAACACTGACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATCAAAAACTCACCCTGT</canonical_amplicon>
		<polymorphic_amplicon>TCTGTATGTCGGAGTACTGATAATTAAAATAATTGCATTTACAGTCGAATGAAGGGCAAAAATTGCCAGTAGCAGCCGAACTACCGCTGAGAAAATAAACMATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCTCATTTATATTGGTTCCCGTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAGAAATTGAGATAATTGAGCTCAACACTGACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATCAAAAACTCACCCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4759</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>3648</contig_pos>
        <strand>+</strand>
        <context>CTCCGGCTAT[A/T]GGKCCATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTAT</left_flank>
        <right_flank>GGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGACGGTGTTTTGCAAAAAAAATCGAATTTAGAGAAATGGTCAAAACTACAGTAACTACAGTAAACTACACCACATAAATTGTTTTATTTTCCGAATTTTCAACATTAAAGTCATTTCTGATGACGGTGGTTATTGTTTCAAGACATTTAAACACTGTCGTTTTCCTTCAATCCCTTCGATTTTTTGATTTTCGATAAAAAGAAATATCAGAAAGGAAATGAAGAAGACTCCTATTGCGTACGATTGTACATACATAAAATGTGGGAACATTGCATACAATGCATGGGAATTAGAACTGATGATGGAATATATATTGTTCTAGGTACAGTACCCTGCAGAAAGAATTTTTGAAGCACTGAAAAATCATTGCAGAACTTTTCGATTTGACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTA</canonical>
            <polymorphic>TGTGACGGTGTTTTGCAAAAAAAATCGAATTTAGAGAAATGGTCAAAACTACAGTAACTACAGTAAACTACACCACATAAATTGTTTTATTTTCCGAATTTTCAACATTAAAGTCATTTCTGATGACGGTGGTTATTGTTTCAAGACATTTAAACACTGTCGTTTTCCTTCAATCCCTTCGATTTTTTGATTTTCGATAAAAAGAAATATCAGAAAGGAAATGAAGAAGACTCCTATTGCGTACGATTGTACATACATAAAATGTGGGAACATTGCATACAATGCATGGGAATTAGAACTGATGATGGAATATATATTGTTCTAGGTACAGTACCCTGCAGAAAGAATTTTTGAAGCACTGAAAAATCATTGCAGAACTTTTCGATTTGACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATWGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 278 160 49 9</canonical_bands>
                <polymorphic_bands>664 278 49 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACAGTACCCTGCAGAAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>CAATCGATCAAGCTCAAACT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TACAGTACCCTGCAGAAAGAATTTTTGAAGCACTGAAAAATCATTGCAGAACTTTTCGATTTGACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTG</canonical_amplicon>
		<polymorphic_amplicon>TACAGTACCCTGCAGAAAGAATTTTTGAAGCACTGAAAAATCATTGCAGAACTTTTCGATTTGACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATWGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4760</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>3651</contig_pos>
        <strand>+</strand>
        <context>CGGCTATWGG[G/T]CCATTTTCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGG</left_flank>
        <right_flank>CCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACGGTGTTTTGCAAAAAAAATCGAATTTAGAGAAATGGTCAAAACTACAGTAACTACAGTAAACTACACCACATAAATTGTTTTATTTTCCGAATTTTCAACATTAAAGTCATTTCTGATGACGGTGGTTATTGTTTCAAGACATTTAAACACTGTCGTTTTCCTTCAATCCCTTCGATTTTTTGATTTTCGATAAAAAGAAATATCAGAAAGGAAATGAAGAAGACTCCTATTGCGTACGATTGTACATACATAAAATGTGGGAACATTGCATACAATGCATGGGAATTAGAACTGATGATGGAATATATATTGTTCTAGGTACAGTACCCTGCAGAAAGAATTTTTGAAGCACTGAAAAATCATTGCAGAACTTTTCGATTTGACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCC</canonical>
            <polymorphic>GACGGTGTTTTGCAAAAAAAATCGAATTTAGAGAAATGGTCAAAACTACAGTAACTACAGTAAACTACACCACATAAATTGTTTTATTTTCCGAATTTTCAACATTAAAGTCATTTCTGATGACGGTGGTTATTGTTTCAAGACATTTAAACACTGTCGTTTTCCTTCAATCCCTTCGATTTTTTGATTTTCGATAAAAAGAAATATCAGAAAGGAAATGAAGAAGACTCCTATTGCGTACGATTGTACATACATAAAATGTGGGAACATTGCATACAATGCATGGGAATTAGAACTGATGATGGAATATATATTGTTCTAGGTACAGTACCCTGCAGAAAGAATTTTTGAAGCACTGAAAAATCATTGCAGAACTTTTCGATTTGACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGKCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACAGTACCCTGCAGAAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>CAATCGATCAAGCTCAAACT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TACAGTACCCTGCAGAAAGAATTTTTGAAGCACTGAAAAATCATTGCAGAACTTTTCGATTTGACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTG</canonical_amplicon>
		<polymorphic_amplicon>TACAGTACCCTGCAGAAAGAATTTTTGAAGCACTGAAAAATCATTGCAGAACTTTTCGATTTGACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGKCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4761</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>3685</contig_pos>
        <strand>+</strand>
        <context>CCCTGGGTTC[C/T]CTGAATTTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTC</left_flank>
        <right_flank>CTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGGTCAAAACTACAGTAACTACAGTAAACTACACCACATAAATTGTTTTATTTTCCGAATTTTCAACATTAAAGTCATTTCTGATGACGGTGGTTATTGTTTCAAGACATTTAAACACTGTCGTTTTCCTTCAATCCCTTCGATTTTTTGATTTTCGATAAAAAGAAATATCAGAAAGGAAATGAAGAAGACTCCTATTGCGTACGATTGTACATACATAAAATGTGGGAACATTGCATACAATGCATGGGAATTAGAACTGATGATGGAATATATATTGTTCTAGGTACAGTACCCTGCAGAAAGAATTTTTGAAGCACTGAAAAATCATTGCAGAACTTTTCGATTTGACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGG</canonical>
            <polymorphic>AATGGTCAAAACTACAGTAACTACAGTAAACTACACCACATAAATTGTTTTATTTTCCGAATTTTCAACATTAAAGTCATTTCTGATGACGGTGGTTATTGTTTCAAGACATTTAAACACTGTCGTTTTCCTTCAATCCCTTCGATTTTTTGATTTTCGATAAAAAGAAATATCAGAAAGGAAATGAAGAAGACTCCTATTGCGTACGATTGTACATACATAAAATGTGGGAACATTGCATACAATGCATGGGAATTAGAACTGATGATGGAATATATATTGTTCTAGGTACAGTACCCTGCAGAAAGAATTTTTGAAGCACTGAAAAATCATTGCAGAACTTTTCGATTTGACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCYCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>300 188 126 117 91 58 27 26 25 24 18</canonical_bands>
                <polymorphic_bands>300 188 144 126 91 58 26 25 24 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTGAAATCAGGAACACATTCT</pcr_primer_p1>
		<pcr_primer_p2>CCAAATATTCTGAAGCTGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>ACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGG</canonical_amplicon>
		<polymorphic_amplicon>ACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCYCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4762</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>3730</contig_pos>
        <strand>+</strand>
        <context>AAGATTTGAA[A/C]TTACGGTTGR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAA</left_flank>
        <right_flank>TTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTTTATTTTCCGAATTTTCAACATTAAAGTCATTTCTGATGACGGTGGTTATTGTTTCAAGACATTTAAACACTGTCGTTTTCCTTCAATCCCTTCGATTTTTTGATTTTCGATAAAAAGAAATATCAGAAAGGAAATGAAGAAGACTCCTATTGCGTACGATTGTACATACATAAAATGTGGGAACATTGCATACAATGCATGGGAATTAGAACTGATGATGGAATATATATTGTTCTAGGTACAGTACCCTGCAGAAAGAATTTTTGAAGCACTGAAAAATCATTGCAGAACTTTTCGATTTGACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTT</canonical>
            <polymorphic>TGTTTTATTTTCCGAATTTTCAACATTAAAGTCATTTCTGATGACGGTGGTTATTGTTTCAAGACATTTAAACACTGTCGTTTTCCTTCAATCCCTTCGATTTTTTGATTTTCGATAAAAAGAAATATCAGAAAGGAAATGAAGAAGACTCCTATTGCGTACGATTGTACATACATAAAATGTGGGAACATTGCATACAATGCATGGGAATTAGAACTGATGATGGAATATATATTGTTCTAGGTACAGTACCCTGCAGAAAGAATTTTTGAAGCACTGAAAAATCATTGCAGAACTTTTCGATTTGACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAMTTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>204 194 121 100 65 55 43 41 40 35 34 18 14 9 8 6 5 4 4</canonical_bands>
                <polymorphic_bands>204 194 161 100 65 55 43 41 35 34 18 14 9 8 6 5 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTGAAATCAGGAACACATTCT</pcr_primer_p1>
		<pcr_primer_p2>CCAAATATTCTGAAGCTGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>ACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGG</canonical_amplicon>
		<polymorphic_amplicon>ACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAMTTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4763</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>3740</contig_pos>
        <strand>+</strand>
        <context>MTTACGGTTG[A/G]GAGCGTRRAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTG</left_flank>
        <right_flank>GAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCGAATTTTCAACATTAAAGTCATTTCTGATGACGGTGGTTATTGTTTCAAGACATTTAAACACTGTCGTTTTCCTTCAATCCCTTCGATTTTTTGATTTTCGATAAAAAGAAATATCAGAAAGGAAATGAAGAAGACTCCTATTGCGTACGATTGTACATACATAAAATGTGGGAACATTGCATACAATGCATGGGAATTAGAACTGATGATGGAATATATATTGTTCTAGGTACAGTACCCTGCAGAAAGAATTTTTGAAGCACTGAAAAATCATTGCAGAACTTTTCGATTTGACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGC</canonical>
            <polymorphic>TCCGAATTTTCAACATTAAAGTCATTTCTGATGACGGTGGTTATTGTTTCAAGACATTTAAACACTGTCGTTTTCCTTCAATCCCTTCGATTTTTTGATTTTCGATAAAAAGAAATATCAGAAAGGAAATGAAGAAGACTCCTATTGCGTACGATTGTACATACATAAAATGTGGGAACATTGCATACAATGCATGGGAATTAGAACTGATGATGGAATATATATTGTTCTAGGTACAGTACCCTGCAGAAAGAATTTTTGAAGCACTGAAAAATCATTGCAGAACTTTTCGATTTGACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGRGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTGGAGTTTGAGCTTGAT</pcr_primer_p1>
		<pcr_primer_p2>CGTTATTTCTGTGAATTTGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACG</canonical_amplicon>
		<polymorphic_amplicon>AATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGRGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4764</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>3747</contig_pos>
        <strand>+</strand>
        <context>TTGRGAGCGT[A/G]RATCACRACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGT</left_flank>
        <right_flank>AATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCAACATTAAAGTCATTTCTGATGACGGTGGTTATTGTTTCAAGACATTTAAACACTGTCGTTTTCCTTCAATCCCTTCGATTTTTTGATTTTCGATAAAAAGAAATATCAGAAAGGAAATGAAGAAGACTCCTATTGCGTACGATTGTACATACATAAAATGTGGGAACATTGCATACAATGCATGGGAATTAGAACTGATGATGGAATATATATTGTTCTAGGTACAGTACCCTGCAGAAAGAATTTTTGAAGCACTGAAAAATCATTGCAGAACTTTTCGATTTGACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAAT</canonical>
            <polymorphic>TTTCAACATTAAAGTCATTTCTGATGACGGTGGTTATTGTTTCAAGACATTTAAACACTGTCGTTTTCCTTCAATCCCTTCGATTTTTTGATTTTCGATAAAAAGAAATATCAGAAAGGAAATGAAGAAGACTCCTATTGCGTACGATTGTACATACATAAAATGTGGGAACATTGCATACAATGCATGGGAATTAGAACTGATGATGGAATATATATTGTTCTAGGTACAGTACCCTGCAGAAAGAATTTTTGAAGCACTGAAAAATCATTGCAGAACTTTTCGATTTGACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTRAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>194 110 103 94 92 81 68 62 47 34 32 25 21 12 10 8 5 2</canonical_bands>
                <polymorphic_bands>199 110 103 94 92 81 68 62 47 34 32 25 21 12 10 8 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>477 370 130 23</canonical_bands>
                <polymorphic_bands>847 130 23</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 477 23</canonical_bands>
                <polymorphic_bands>977 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTTGAGCTTGATCGATTG</pcr_primer_p1>
		<pcr_primer_p2>GTTGTCGTTATTTCTGTGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAAC</canonical_amplicon>
		<polymorphic_amplicon>AGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTRAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4765</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>3748</contig_pos>
        <strand>+</strand>
        <context>TGRGAGCGTR[A/G]ATCACRACAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTG</left_flank>
        <right_flank>ATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAACATTAAAGTCATTTCTGATGACGGTGGTTATTGTTTCAAGACATTTAAACACTGTCGTTTTCCTTCAATCCCTTCGATTTTTTGATTTTCGATAAAAAGAAATATCAGAAAGGAAATGAAGAAGACTCCTATTGCGTACGATTGTACATACATAAAATGTGGGAACATTGCATACAATGCATGGGAATTAGAACTGATGATGGAATATATATTGTTCTAGGTACAGTACCCTGCAGAAAGAATTTTTGAAGCACTGAAAAATCATTGCAGAACTTTTCGATTTGACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATT</canonical>
            <polymorphic>TTCAACATTAAAGTCATTTCTGATGACGGTGGTTATTGTTTCAAGACATTTAAACACTGTCGTTTTCCTTCAATCCCTTCGATTTTTTGATTTTCGATAAAAAGAAATATCAGAAAGGAAATGAAGAAGACTCCTATTGCGTACGATTGTACATACATAAAATGTGGGAACATTGCATACAATGCATGGGAATTAGAACTGATGATGGAATATATATTGTTCTAGGTACAGTACCCTGCAGAAAGAATTTTTGAAGCACTGAAAAATCATTGCAGAACTTTTCGATTTGACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGRATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>477 370 129 24</canonical_bands>
                <polymorphic_bands>847 129 24</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>499 477 24</canonical_bands>
                <polymorphic_bands>976 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTTGAGCTTGATCGATTG</pcr_primer_p1>
		<pcr_primer_p2>GTTGTCGTTATTTCTGTGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAAC</canonical_amplicon>
		<polymorphic_amplicon>AGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGRATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4766</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>3754</contig_pos>
        <strand>+</strand>
        <context>CGTRRATCAC[A/G]ACAGTGTTAR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCAC</left_flank>
        <right_flank>ACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAAAGTCATTTCTGATGACGGTGGTTATTGTTTCAAGACATTTAAACACTGTCGTTTTCCTTCAATCCCTTCGATTTTTTGATTTTCGATAAAAAGAAATATCAGAAAGGAAATGAAGAAGACTCCTATTGCGTACGATTGTACATACATAAAATGTGGGAACATTGCATACAATGCATGGGAATTAGAACTGATGATGGAATATATATTGTTCTAGGTACAGTACCCTGCAGAAAGAATTTTTGAAGCACTGAAAAATCATTGCAGAACTTTTCGATTTGACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAG</canonical>
            <polymorphic>ATTAAAGTCATTTCTGATGACGGTGGTTATTGTTTCAAGACATTTAAACACTGTCGTTTTCCTTCAATCCCTTCGATTTTTTGATTTTCGATAAAAAGAAATATCAGAAAGGAAATGAAGAAGACTCCTATTGCGTACGATTGTACATACATAAAATGTGGGAACATTGCATACAATGCATGGGAATTAGAACTGATGATGGAATATATATTGTTCTAGGTACAGTACCCTGCAGAAAGAATTTTTGAAGCACTGAAAAATCATTGCAGAACTTTTCGATTTGACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACRACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTTGAGCTTGATCGATTG</pcr_primer_p1>
		<pcr_primer_p2>GTTGTCGTTATTTCTGTGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAAC</canonical_amplicon>
		<polymorphic_amplicon>AGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACRACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4767</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>3764</contig_pos>
        <strand>+</strand>
        <context>RACAGTGTTA[A/G]AATGAAGTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTA</left_flank>
        <right_flank>AATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTGATGACGGTGGTTATTGTTTCAAGACATTTAAACACTGTCGTTTTCCTTCAATCCCTTCGATTTTTTGATTTTCGATAAAAAGAAATATCAGAAAGGAAATGAAGAAGACTCCTATTGCGTACGATTGTACATACATAAAATGTGGGAACATTGCATACAATGCATGGGAATTAGAACTGATGATGGAATATATATTGTTCTAGGTACAGTACCCTGCAGAAAGAATTTTTGAAGCACTGAAAAATCATTGCAGAACTTTTCGATTTGACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAAC</canonical>
            <polymorphic>TTTCTGATGACGGTGGTTATTGTTTCAAGACATTTAAACACTGTCGTTTTCCTTCAATCCCTTCGATTTTTTGATTTTCGATAAAAAGAAATATCAGAAAGGAAATGAAGAAGACTCCTATTGCGTACGATTGTACATACATAAAATGTGGGAACATTGCATACAATGCATGGGAATTAGAACTGATGATGGAATATATATTGTTCTAGGTACAGTACCCTGCAGAAAGAATTTTTGAAGCACTGAAAAATCATTGCAGAACTTTTCGATTTGACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTARAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTTGAGCTTGATCGATTG</pcr_primer_p1>
		<pcr_primer_p2>GTTGTCGTTATTTCTGTGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAAC</canonical_amplicon>
		<polymorphic_amplicon>AGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTARAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4768</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>3779</contig_pos>
        <strand>+</strand>
        <context>AAGTTTAAAG[C/G]AACCTTGTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAG</left_flank>
        <right_flank>AACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTATTGTTTCAAGACATTTAAACACTGTCGTTTTCCTTCAATCCCTTCGATTTTTTGATTTTCGATAAAAAGAAATATCAGAAAGGAAATGAAGAAGACTCCTATTGCGTACGATTGTACATACATAAAATGTGGGAACATTGCATACAATGCATGGGAATTAGAACTGATGATGGAATATATATTGTTCTAGGTACAGTACCCTGCAGAAAGAATTTTTGAAGCACTGAAAAATCATTGCAGAACTTTTCGATTTGACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTA</canonical>
            <polymorphic>GTTATTGTTTCAAGACATTTAAACACTGTCGTTTTCCTTCAATCCCTTCGATTTTTTGATTTTCGATAAAAAGAAATATCAGAAAGGAAATGAAGAAGACTCCTATTGCGTACGATTGTACATACATAAAATGTGGGAACATTGCATACAATGCATGGGAATTAGAACTGATGATGGAATATATATTGTTCTAGGTACAGTACCCTGCAGAAAGAATTTTTGAAGCACTGAAAAATCATTGCAGAACTTTTCGATTTGACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGSAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTTGAGCTTGATCGATTG</pcr_primer_p1>
		<pcr_primer_p2>GTTGTCGTTATTTCTGTGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAAC</canonical_amplicon>
		<polymorphic_amplicon>AGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGSAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4770</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>3916</contig_pos>
        <strand>+</strand>
        <context>GGTGTTTTGC[A/G]AAATCTCAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGC</left_flank>
        <right_flank>AAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACATTGCATACAATGCATGGGAATTAGAACTGATGATGGAATATATATTGTTCTAGGTACAGTACCCTGCAGAAAGAATTTTTGAAGCACTGAAAAATCATTGCAGAACTTTTCGATTTGACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAAATGAGAGTTGTGCCCCTTTAACACTGCTTATCTCGTTTTCGTTAGAAA</canonical>
            <polymorphic>AACATTGCATACAATGCATGGGAATTAGAACTGATGATGGAATATATATTGTTCTAGGTACAGTACCCTGCAGAAAGAATTTTTGAAGCACTGAAAAATCATTGCAGAACTTTTCGATTTGACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCRAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAAATGAGAGTTGTGCCCCTTTAACACTGCTTATCTCGTTTTCGTTAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTCCAGATTGTGTAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TCCACACTATATGTAGTTCCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGA</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCRAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4771</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>3974</contig_pos>
        <strand>+</strand>
        <context>TTATTGATTT[C/T]CAAAATTKTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTT</left_flank>
        <right_flank>CAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACAGTACCCTGCAGAAAGAATTTTTGAAGCACTGAAAAATCATTGCAGAACTTTTCGATTTGACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAAATGAGAGTTGTGCCCCTTTAACACTGCTTATCTCGTTTTCGTTAGAAAATCCAAGCTTTAATTTTGTTTAGTGCACTCTAAGAAAATACGAAAAATTCTGGAATTC</canonical>
            <polymorphic>TACAGTACCCTGCAGAAAGAATTTTTGAAGCACTGAAAAATCATTGCAGAACTTTTCGATTTGACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTYCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAAATGAGAGTTGTGCCCCTTTAACACTGCTTATCTCGTTTTCGTTAGAAAATCCAAGCTTTAATTTTGTTTAGTGCACTCTAAGAAAATACGAAAAATTCTGGAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTCCAGATTGTGTAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TCCACACTATATGTAGTTCCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGA</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTYCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4772</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>3982</contig_pos>
        <strand>+</strand>
        <context>TTYCAAAATT[G/T]TAATTTTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATT</left_flank>
        <right_flank>TAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGCAGAAAGAATTTTTGAAGCACTGAAAAATCATTGCAGAACTTTTCGATTTGACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAAATGAGAGTTGTGCCCCTTTAACACTGCTTATCTCGTTTTCGTTAGAAAATCCAAGCTTTAATTTTGTTTAGTGCACTCTAAGAAAATACGAAAAATTCTGGAATTCTGGATTTT</canonical>
            <polymorphic>CCTGCAGAAAGAATTTTTGAAGCACTGAAAAATCATTGCAGAACTTTTCGATTTGACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTKTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAAATGAGAGTTGTGCCCCTTTAACACTGCTTATCTCGTTTTCGTTAGAAAATCCAAGCTTTAATTTTGTTTAGTGCACTCTAAGAAAATACGAAAAATTCTGGAATTCTGGATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTCCAGATTGTGTAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TCCACACTATATGTAGTTCCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGA</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTKTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4773</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>4091</contig_pos>
        <strand>+</strand>
        <context>GGAAATATTG[A/C]ATATTATGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTG</left_flank>
        <right_flank>ATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAAATGAGAGTTGTGCCCCTTTAACACTGCTTATCTCGTTTTCGTTAGAAAATCCAAGCTTTAATTTTGTTTAGTGCACTCTAAGAAAATACGAAAAATTCTGGAATTCTGGATTTTTCCAAAAATGAGACCTCAAAAACCACTCACCATTTTGAATATCCGCCAATTTTAAAAATTTTAGAATAAACATTTATAGAATTTAAAAAAAAATCAAGAATATAGTTGG</canonical>
            <polymorphic>ATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGMATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAAATGAGAGTTGTGCCCCTTTAACACTGCTTATCTCGTTTTCGTTAGAAAATCCAAGCTTTAATTTTGTTTAGTGCACTCTAAGAAAATACGAAAAATTCTGGAATTCTGGATTTTTCCAAAAATGAGACCTCAAAAACCACTCACCATTTTGAATATCCGCCAATTTTAAAAATTTTAGAATAAACATTTATAGAATTTAAAAAAAAATCAAGAATATAGTTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>498 278 217 7</canonical_bands>
                <polymorphic_bands>505 278 217</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGACAACTACTGTAACCAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>AGTTTACTATCTTCCCCTGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>CGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACT</canonical_amplicon>
		<polymorphic_amplicon>CGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGMATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4774</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>4106</contig_pos>
        <strand>+</strand>
        <context>TATGTATGGG[A/T]ATTAGAACAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGG</left_flank>
        <right_flank>ATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAAATGAGAGTTGTGCCCCTTTAACACTGCTTATCTCGTTTTCGTTAGAAAATCCAAGCTTTAATTTTGTTTAGTGCACTCTAAGAAAATACGAAAAATTCTGGAATTCTGGATTTTTCCAAAAATGAGACCTCAAAAACCACTCACCATTTTGAATATCCGCCAATTTTAAAAATTTTAGAATAAACATTTATAGAATTTAAAAAAAAATCAAGAATATAGTTGGCTCCATACACAAGGA</canonical>
            <polymorphic>AATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGWATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAAATGAGAGTTGTGCCCCTTTAACACTGCTTATCTCGTTTTCGTTAGAAAATCCAAGCTTTAATTTTGTTTAGTGCACTCTAAGAAAATACGAAAAATTCTGGAATTCTGGATTTTTCCAAAAATGAGACCTCAAAAACCACTCACCATTTTGAATATCCGCCAATTTTAAAAATTTTAGAATAAACATTTATAGAATTTAAAAAAAAATCAAGAATATAGTTGGCTCCATACACAAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGACAACTACTGTAACCAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>AGTTTACTATCTTCCCCTGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>CGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACT</canonical_amplicon>
		<polymorphic_amplicon>CGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGWATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4775</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>4118</contig_pos>
        <strand>+</strand>
        <context>TTAGAACAGA[A/T]TATGAAATAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGA</left_flank>
        <right_flank>TATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAAATGAGAGTTGTGCCCCTTTAACACTGCTTATCTCGTTTTCGTTAGAAAATCCAAGCTTTAATTTTGTTTAGTGCACTCTAAGAAAATACGAAAAATTCTGGAATTCTGGATTTTTCCAAAAATGAGACCTCAAAAACCACTCACCATTTTGAATATCCGCCAATTTTAAAAATTTTAGAATAAACATTTATAGAATTTAAAAAAAAATCAAGAATATAGTTGGCTCCATACACAAGGAGCCTGTAGATGT</canonical>
            <polymorphic>AAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAWTATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAAATGAGAGTTGTGCCCCTTTAACACTGCTTATCTCGTTTTCGTTAGAAAATCCAAGCTTTAATTTTGTTTAGTGCACTCTAAGAAAATACGAAAAATTCTGGAATTCTGGATTTTTCCAAAAATGAGACCTCAAAAACCACTCACCATTTTGAATATCCGCCAATTTTAAAAATTTTAGAATAAACATTTATAGAATTTAAAAAAAAATCAAGAATATAGTTGGCTCCATACACAAGGAGCCTGTAGATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGACAACTACTGTAACCAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>AGTTTACTATCTTCCCCTGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>CGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACT</canonical_amplicon>
		<polymorphic_amplicon>CGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAWTATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4776</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>4165</contig_pos>
        <strand>+</strand>
        <context>AGAAATATAT[C/G]ATWKTTTRAY</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATAT</left_flank>
        <right_flank>ATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAAATGAGAGTTGTGCCCCTTTAACACTGCTTATCTCGTTTTCGTTAGAAAATCCAAGCTTTAATTTTGTTTAGTGCACTCTAAGAAAATACGAAAAATTCTGGAATTCTGGATTTTTCCAAAAATGAGACCTCAAAAACCACTCACCATTTTGAATATCCGCCAATTTTAAAAATTTTAGAATAAACATTTATAGAATTTAAAAAAAAATCAAGAATATAGTTGGCTCCATACACAAGGAGCCTGTAGATGTCCTTAAGGGAATCAGAAATAATGTGGACGGAGAACTAGTCCGCCCTT</canonical>
            <polymorphic>AGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATSATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAAATGAGAGTTGTGCCCCTTTAACACTGCTTATCTCGTTTTCGTTAGAAAATCCAAGCTTTAATTTTGTTTAGTGCACTCTAAGAAAATACGAAAAATTCTGGAATTCTGGATTTTTCCAAAAATGAGACCTCAAAAACCACTCACCATTTTGAATATCCGCCAATTTTAAAAATTTTAGAATAAACATTTATAGAATTTAAAAAAAAATCAAGAATATAGTTGGCTCCATACACAAGGAGCCTGTAGATGTCCTTAAGGGAATCAGAAATAATGTGGACGGAGAACTAGTCCGCCCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGAACTACATATAGTGTGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTCAGTGCTTATTTTCAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>AAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAA</canonical_amplicon>
		<polymorphic_amplicon>AAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATSATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4777</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>4168</contig_pos>
        <strand>+</strand>
        <context>AATATATSAT[A/T]KTTTRAYMTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCAT</left_flank>
        <right_flank>GTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAAATGAGAGTTGTGCCCCTTTAACACTGCTTATCTCGTTTTCGTTAGAAAATCCAAGCTTTAATTTTGTTTAGTGCACTCTAAGAAAATACGAAAAATTCTGGAATTCTGGATTTTTCCAAAAATGAGACCTCAAAAACCACTCACCATTTTGAATATCCGCCAATTTTAAAAATTTTAGAATAAACATTTATAGAATTTAAAAAAAAATCAAGAATATAGTTGGCTCCATACACAAGGAGCCTGTAGATGTCCTTAAGGGAATCAGAAATAATGTGGACGGAGAACTAGTCCGCCCTTTTA</canonical>
            <polymorphic>CGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATWGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAAATGAGAGTTGTGCCCCTTTAACACTGCTTATCTCGTTTTCGTTAGAAAATCCAAGCTTTAATTTTGTTTAGTGCACTCTAAGAAAATACGAAAAATTCTGGAATTCTGGATTTTTCCAAAAATGAGACCTCAAAAACCACTCACCATTTTGAATATCCGCCAATTTTAAAAATTTTAGAATAAACATTTATAGAATTTAAAAAAAAATCAAGAATATAGTTGGCTCCATACACAAGGAGCCTGTAGATGTCCTTAAGGGAATCAGAAATAATGTGGACGGAGAACTAGTCCGCCCTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGAACTACATATAGTGTGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTCAGTGCTTATTTTCAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>AAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAA</canonical_amplicon>
		<polymorphic_amplicon>AAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATWGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4778</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>4169</contig_pos>
        <strand>+</strand>
        <context>ATATATSATW[G/T]TTTRAYMTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATA</left_flank>
        <right_flank>TTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAAATGAGAGTTGTGCCCCTTTAACACTGCTTATCTCGTTTTCGTTAGAAAATCCAAGCTTTAATTTTGTTTAGTGCACTCTAAGAAAATACGAAAAATTCTGGAATTCTGGATTTTTCCAAAAATGAGACCTCAAAAACCACTCACCATTTTGAATATCCGCCAATTTTAAAAATTTTAGAATAAACATTTATAGAATTTAAAAAAAAATCAAGAATATAGTTGGCTCCATACACAAGGAGCCTGTAGATGTCCTTAAGGGAATCAGAAATAATGTGGACGGAGAACTAGTCCGCCCTTTTAT</canonical>
            <polymorphic>GAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAKTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAAATGAGAGTTGTGCCCCTTTAACACTGCTTATCTCGTTTTCGTTAGAAAATCCAAGCTTTAATTTTGTTTAGTGCACTCTAAGAAAATACGAAAAATTCTGGAATTCTGGATTTTTCCAAAAATGAGACCTCAAAAACCACTCACCATTTTGAATATCCGCCAATTTTAAAAATTTTAGAATAAACATTTATAGAATTTAAAAAAAAATCAAGAATATAGTTGGCTCCATACACAAGGAGCCTGTAGATGTCCTTAAGGGAATCAGAAATAATGTGGACGGAGAACTAGTCCGCCCTTTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGAACTACATATAGTGTGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTCAGTGCTTATTTTCAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>AAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAA</canonical_amplicon>
		<polymorphic_amplicon>AAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAKTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4779</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>4173</contig_pos>
        <strand>+</strand>
        <context>ATSATWKTTT[A/G]AYMTTTTCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTT</left_flank>
        <right_flank>ACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAAATGAGAGTTGTGCCCCTTTAACACTGCTTATCTCGTTTTCGTTAGAAAATCCAAGCTTTAATTTTGTTTAGTGCACTCTAAGAAAATACGAAAAATTCTGGAATTCTGGATTTTTCCAAAAATGAGACCTCAAAAACCACTCACCATTTTGAATATCCGCCAATTTTAAAAATTTTAGAATAAACATTTATAGAATTTAAAAAAAAATCAAGAATATAGTTGGCTCCATACACAAGGAGCCTGTAGATGTCCTTAAGGGAATCAGAAATAATGTGGACGGAGAACTAGTCCGCCCTTTTATACCC</canonical>
            <polymorphic>TCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTRACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAAATGAGAGTTGTGCCCCTTTAACACTGCTTATCTCGTTTTCGTTAGAAAATCCAAGCTTTAATTTTGTTTAGTGCACTCTAAGAAAATACGAAAAATTCTGGAATTCTGGATTTTTCCAAAAATGAGACCTCAAAAACCACTCACCATTTTGAATATCCGCCAATTTTAAAAATTTTAGAATAAACATTTATAGAATTTAAAAAAAAATCAAGAATATAGTTGGCTCCATACACAAGGAGCCTGTAGATGTCCTTAAGGGAATCAGAAATAATGTGGACGGAGAACTAGTCCGCCCTTTTATACCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>398 215 108 100 56 52 40 31</canonical_bands>
                <polymorphic_bands>613 108 100 56 52 40 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGAACTACATATAGTGTGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTCAGTGCTTATTTTCAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>AAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAA</canonical_amplicon>
		<polymorphic_amplicon>AAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTRACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4780</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>4677</contig_pos>
        <strand>+</strand>
        <context>TATACCCCCT[C/T]TTTGTGAGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAATCAGAAATAATGTGGACGGAGAACTAGTCCGCCCTTTTATACCCCCT</left_flank>
        <right_flank>TTTGTGAGACTCCGCCCACATGGGTCGAGAGACGCATGTGGGCGGAGTCT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAAATGAGAGTTGTGCCCCTTTAACACTGCTTATCTCGTTTTCGTTAGAAAATCCAAGCTTTAATTTTGTTTAGTGCACTCTAAGAAAATACGAAAAATTCTGGAATTCTGGATTTTTCCAAAAATGAGACCTCAAAAACCACTCACCATTTTGAATATCCGCCAATTTTAAAAATTTTAGAATAAACATTTATAGAATTTAAAAAAAAATCAAGAATATAGTTGGCTCCATACACAAGGAGCCTGTAGATGTCCTTAAGGGAATCAGAAATAATGTGGACGGAGAACTAGTCCGCCCTTTTATACCCCCTTTTTGTGAGACTCCGCCCACATGGGTCGAGAGACGCATGTGGGCGGAGTCTAAACTCATGATCAAAAATCGTGTGTTTCCGTCAGTTTGTGCTAAACTCTGAGATTGAAGCATTGACAGAAAGTTGACAAAACATTTCTTTATCAATGAAGACAGCGCCTTGAGGAACCTTTATTGCTCAAAGTTCTTCTGTGGAGGAACAAAACTTTAAGCCAGTATATCTCGGTCTCTGTACAAGATATCAAAAACAGATCAACTAACAAAATACGTTTGACATTATAATGAACACTTTATCAATAAGCCACTTTTAAATATCTTTCTGTTCTTTTAAAGATATCGGAAGAGTGCCAAGGAAAAATGGAAGAATCGACACTATTTTTTTTGTGGGATTTGGTGATTTAAAATAGTAACAAAATTAAAAAATGAAAAAACAAAACTTTTTTATTATCCGATTCAAATAATGCTAAAAATTTGAATTAATTCCTCTGGATCATTTCCCCAT</canonical>
            <polymorphic>TTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAAATGAGAGTTGTGCCCCTTTAACACTGCTTATCTCGTTTTCGTTAGAAAATCCAAGCTTTAATTTTGTTTAGTGCACTCTAAGAAAATACGAAAAATTCTGGAATTCTGGATTTTTCCAAAAATGAGACCTCAAAAACCACTCACCATTTTGAATATCCGCCAATTTTAAAAATTTTAGAATAAACATTTATAGAATTTAAAAAAAAATCAAGAATATAGTTGGCTCCATACACAAGGAGCCTGTAGATGTCCTTAAGGGAATCAGAAATAATGTGGACGGAGAACTAGTCCGCCCTTTTATACCCCCTYTTTGTGAGACTCCGCCCACATGGGTCGAGAGACGCATGTGGGCGGAGTCTAAACTCATGATCAAAAATCGTGTGTTTCCGTCAGTTTGTGCTAAACTCTGAGATTGAAGCATTGACAGAAAGTTGACAAAACATTTCTTTATCAATGAAGACAGCGCCTTGAGGAACCTTTATTGCTCAAAGTTCTTCTGTGGAGGAACAAAACTTTAAGCCAGTATATCTCGGTCTCTGTACAAGATATCAAAAACAGATCAACTAACAAAATACGTTTGACATTATAATGAACACTTTATCAATAAGCCACTTTTAAATATCTTTCTGTTCTTTTAAAGATATCGGAAGAGTGCCAAGGAAAAATGGAAGAATCGACACTATTTTTTTTGTGGGATTTGGTGATTTAAAATAGTAACAAAATTAAAAAATGAAAAAACAAAACTTTTTTATTATCCGATTCAAATAATGCTAAAAATTTGAATTAATTCCTCTGGATCATTTCCCCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTTAAGGGAATCAGAAATAAT</pcr_primer_p1>
		<pcr_primer_p2>CAGAAGAACTTTGAGCAATAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCTTAAGGGAATCAGAAATAATGTGGACGGAGAACTAGTCCGCCCTTTTATACCCCCTTTTTGTGAGACTCCGCCCACATGGGTCGAGAGACGCATGTGGGCGGAGTCTAAACTCATGATCAAAAATCGTGTGTTTCCGTCAGTTTGTGCTAAACTCTGAGATTGAAGCATTGACAGAAAGTTGACAAAACATTTCTTTATCAATGAAGACAGCGCCTTGAGGAACCTTTATTGCTCAAAGTTCTTCTG</canonical_amplicon>
		<polymorphic_amplicon>TCCTTAAGGGAATCAGAAATAATGTGGACGGAGAACTAGTCCGCCCTTTTATACCCCCTYTTTGTGAGACTCCGCCCACATGGGTCGAGAGACGCATGTGGGCGGAGTCTAAACTCATGATCAAAAATCGTGTGTTTCCGTCAGTTTGTGCTAAACTCTGAGATTGAAGCATTGACAGAAAGTTGACAAAACATTTCTTTATCAATGAAGACAGCGCCTTGAGGAACCTTTATTGCTCAAAGTTCTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4781</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>4715</contig_pos>
        <strand>+</strand>
        <context>AGAGACGCAT[A/G]TGGGCGGAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTATACCCCCTTTTTGTGAGACTCCGCCCACATGGGTCGAGAGACGCAT</left_flank>
        <right_flank>TGGGCGGAGTCTAAACTCATGATCAAAAATCGTGTGTTTCCGTCAGTTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAAATGAGAGTTGTGCCCCTTTAACACTGCTTATCTCGTTTTCGTTAGAAAATCCAAGCTTTAATTTTGTTTAGTGCACTCTAAGAAAATACGAAAAATTCTGGAATTCTGGATTTTTCCAAAAATGAGACCTCAAAAACCACTCACCATTTTGAATATCCGCCAATTTTAAAAATTTTAGAATAAACATTTATAGAATTTAAAAAAAAATCAAGAATATAGTTGGCTCCATACACAAGGAGCCTGTAGATGTCCTTAAGGGAATCAGAAATAATGTGGACGGAGAACTAGTCCGCCCTTTTATACCCCCTTTTTGTGAGACTCCGCCCACATGGGTCGAGAGACGCATGTGGGCGGAGTCTAAACTCATGATCAAAAATCGTGTGTTTCCGTCAGTTTGTGCTAAACTCTGAGATTGAAGCATTGACAGAAAGTTGACAAAACATTTCTTTATCAATGAAGACAGCGCCTTGAGGAACCTTTATTGCTCAAAGTTCTTCTGTGGAGGAACAAAACTTTAAGCCAGTATATCTCGGTCTCTGTACAAGATATCAAAAACAGATCAACTAACAAAATACGTTTGACATTATAATGAACACTTTATCAATAAGCCACTTTTAAATATCTTTCTGTTCTTTTAAAGATATCGGAAGAGTGCCAAGGAAAAATGGAAGAATCGACACTATTTTTTTTGTGGGATTTGGTGATTTAAAATAGTAACAAAATTAAAAAATGAAAAAACAAAACTTTTTTATTATCCGATTCAAATAATGCTAAAAATTTGAATTAATTCCTCTGGATCATTTCCCCATCATTTTTTCCTCTTGAGCTCCACCAGAAGTTCCCAGTT</canonical>
            <polymorphic>GTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAAATGAGAGTTGTGCCCCTTTAACACTGCTTATCTCGTTTTCGTTAGAAAATCCAAGCTTTAATTTTGTTTAGTGCACTCTAAGAAAATACGAAAAATTCTGGAATTCTGGATTTTTCCAAAAATGAGACCTCAAAAACCACTCACCATTTTGAATATCCGCCAATTTTAAAAATTTTAGAATAAACATTTATAGAATTTAAAAAAAAATCAAGAATATAGTTGGCTCCATACACAAGGAGCCTGTAGATGTCCTTAAGGGAATCAGAAATAATGTGGACGGAGAACTAGTCCGCCCTTTTATACCCCCTTTTTGTGAGACTCCGCCCACATGGGTCGAGAGACGCATRTGGGCGGAGTCTAAACTCATGATCAAAAATCGTGTGTTTCCGTCAGTTTGTGCTAAACTCTGAGATTGAAGCATTGACAGAAAGTTGACAAAACATTTCTTTATCAATGAAGACAGCGCCTTGAGGAACCTTTATTGCTCAAAGTTCTTCTGTGGAGGAACAAAACTTTAAGCCAGTATATCTCGGTCTCTGTACAAGATATCAAAAACAGATCAACTAACAAAATACGTTTGACATTATAATGAACACTTTATCAATAAGCCACTTTTAAATATCTTTCTGTTCTTTTAAAGATATCGGAAGAGTGCCAAGGAAAAATGGAAGAATCGACACTATTTTTTTTGTGGGATTTGGTGATTTAAAATAGTAACAAAATTAAAAAATGAAAAAACAAAACTTTTTTATTATCCGATTCAAATAATGCTAAAAATTTGAATTAATTCCTCTGGATCATTTCCCCATCATTTTTTCCTCTTGAGCTCCACCAGAAGTTCCCAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>482 481 21 16</canonical_bands>
                <polymorphic_bands>482 481 37</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>148 128 102 94 89 64 50 43 43 40 32 25 22 17 16 16 16 14 12 11 10 4 2 2</canonical_bands>
                <polymorphic_bands>148 128 102 94 89 64 54 50 43 43 40 25 17 16 16 16 14 12 11 10 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTTAAGGGAATCAGAAATAAT</pcr_primer_p1>
		<pcr_primer_p2>CAGAAGAACTTTGAGCAATAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCTTAAGGGAATCAGAAATAATGTGGACGGAGAACTAGTCCGCCCTTTTATACCCCCTTTTTGTGAGACTCCGCCCACATGGGTCGAGAGACGCATGTGGGCGGAGTCTAAACTCATGATCAAAAATCGTGTGTTTCCGTCAGTTTGTGCTAAACTCTGAGATTGAAGCATTGACAGAAAGTTGACAAAACATTTCTTTATCAATGAAGACAGCGCCTTGAGGAACCTTTATTGCTCAAAGTTCTTCTG</canonical_amplicon>
		<polymorphic_amplicon>TCCTTAAGGGAATCAGAAATAATGTGGACGGAGAACTAGTCCGCCCTTTTATACCCCCTTTTTGTGAGACTCCGCCCACATGGGTCGAGAGACGCATRTGGGCGGAGTCTAAACTCATGATCAAAAATCGTGTGTTTCCGTCAGTTTGTGCTAAACTCTGAGATTGAAGCATTGACAGAAAGTTGACAAAACATTTCTTTATCAATGAAGACAGCGCCTTGAGGAACCTTTATTGCTCAAAGTTCTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4782</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>4935</contig_pos>
        <strand></strand>
        <context>agatcaacta[A/C]caaaatacgt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGCCAGTATATCTCGGTCTCTGTACAAGATATCAAAAACAGATCAACTA</left_flank>
        <right_flank>CAAAATACGTTTGACATTATAATGAACACTTTATCAATAAGCCACTTTTA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGTGCACTCTAAGAAAATACGAAAAATTCTGGAATTCTGGATTTTTCCAAAAATGAGACCTCAAAAACCACTCACCATTTTGAATATCCGCCAATTTTAAAAATTTTAGAATAAACATTTATAGAATTTAAAAAAAAATCAAGAATATAGTTGGCTCCATACACAAGGAGCCTGTAGATGTCCTTAAGGGAATCAGAAATAATGTGGACGGAGAACTAGTCCGCCCTTTTATACCCCCTTTTTGTGAGACTCCGCCCACATGGGTCGAGAGACGCATGTGGGCGGAGTCTAAACTCATGATCAAAAATCGTGTGTTTCCGTCAGTTTGTGCTAAACTCTGAGATTGAAGCATTGACAGAAAGTTGACAAAACATTTCTTTATCAATGAAGACAGCGCCTTGAGGAACCTTTATTGCTCAAAGTTCTTCTGTGGAGGAACAAAACTTTAAGCCAGTATATCTCGGTCTCTGTACAAGATATCAAAAACAGATCAACTAACAAAATACGTTTGACATTATAATGAACACTTTATCAATAAGCCACTTTTAAATATCTTTCTGTTCTTTTAAAGATATCGGAAGAGTGCCAAGGAAAAATGGAAGAATCGACACTATTTTTTTTGTGGGATTTGGTGATTTAAAATAGTAACAAAATTAAAAAATGAAAAAACAAAACTTTTTTATTATCCGATTCAAATAATGCTAAAAATTTGAATTAATTCCTCTGGATCATTTCCCCATCATTTTTTCCTCTTGAGCTCCACCAGAAGTTCCCAGTTCCAACTCTTTGATCTGTAAAAACAACAGTGTTTTCTCATTATTATCCGTTTTATCAAAATATTACTTTTCGAGAATGTCGACTTTCTTTTTCAGAAGCGCATTTTCGGCTCTTTAGTCTGATCGTTGGAGTGACAATTCGTTTCCAATTCGTCCCTCCTAAAAATAAGAGAAATGAATTAAGGTGAAAATAGTTCAGTAACCTTACTTTACGAAAGGACC</canonical>
            <polymorphic>TTAGTGCACTCTAAGAAAATACGAAAAATTCTGGAATTCTGGATTTTTCCAAAAATGAGACCTCAAAAACCACTCACCATTTTGAATATCCGCCAATTTTAAAAATTTTAGAATAAACATTTATAGAATTTAAAAAAAAATCAAGAATATAGTTGGCTCCATACACAAGGAGCCTGTAGATGTCCTTAAGGGAATCAGAAATAATGTGGACGGAGAACTAGTCCGCCCTTTTATACCCCCTTTTTGTGAGACTCCGCCCACATGGGTCGAGAGACGCATGTGGGCGGAGTCTAAACTCATGATCAAAAATCGTGTGTTTCCGTCAGTTTGTGCTAAACTCTGAGATTGAAGCATTGACAGAAAGTTGACAAAACATTTCTTTATCAATGAAGACAGCGCCTTGAGGAACCTTTATTGCTCAAAGTTCTTCTGTGGAGGAACAAAACTTTAAGCCAGTATATCTCGGTCTCTGTACAAGATATCAAAAACAGATCAACTAMCAAAATACGTTTGACATTATAATGAACACTTTATCAATAAGCCACTTTTAAATATCTTTCTGTTCTTTTAAAGATATCGGAAGAGTGCCAAGGAAAAATGGAAGAATCGACACTATTTTTTTTGTGGGATTTGGTGATTTAAAATAGTAACAAAATTAAAAAATGAAAAAACAAAACTTTTTTATTATCCGATTCAAATAATGCTAAAAATTTGAATTAATTCCTCTGGATCATTTCCCCATCATTTTTTCCTCTTGAGCTCCACCAGAAGTTCCCAGTTCCAACTCTTTGATCTGTAAAAACAACAGTGTTTTCTCATTATTATCCGTTTTATCAAAATATTACTTTTCGAGAATGTCGACTTTCTTTTTCAGAAGCGCATTTTCGGCTCTTTAGTCTGATCGTTGGAGTGACAATTCGTTTCCAATTCGTCCCTCCTAAAAATAAGAGAAATGAATTAAGGTGAAAATAGTTCAGTAACCTTACTTTACGAAAGGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACCTTTATTGCTCAAAGTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTGTTACTATTTTAAATCACCAAATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAACCTTTATTGCTCAAAGTTCTTCTGTGGAGGAACAAAACTTTAAGCCAGTATATCTCGGTCTCTGTACAAGATATCAAAAACAGATCAACTAACAAAATACGTTTGACATTATAATGAACACTTTATCAATAAGCCACTTTTAAATATCTTTCTGTTCTTTTAAAGATATCGGAAGAGTGCCAAGGAAAAATGGAAGAATCGACACTATTTTTTTTGTGGGATTTGGTGATTTAAAATAGTAACAA</canonical_amplicon>
		<polymorphic_amplicon>GAACCTTTATTGCTCAAAGTTCTTCTGTGGAGGAACAAAACTTTAAGCCAGTATATCTCGGTCTCTGTACAAGATATCAAAAACAGATCAACTAMCAAAATACGTTTGACATTATAATGAACACTTTATCAATAAGCCACTTTTAAATATCTTTCTGTTCTTTTAAAGATATCGGAAGAGTGCCAAGGAAAAATGGAAGAATCGACACTATTTTTTTTGTGGGATTTGGTGATTTAAAATAGTAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4783</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>5022</contig_pos>
        <strand>+</strand>
        <context>TCGGAAGAGT[A/G]CCAAGGAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAAGCCACTTTTAAATATCTTTCTGTTCTTTTAAAGATATCGGAAGAGT</left_flank>
        <right_flank>CCAAGGAAAAATGGAAGAATCGACACTATTTTTTTTGTGGGATTTGGTGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCGCCAATTTTAAAAATTTTAGAATAAACATTTATAGAATTTAAAAAAAAATCAAGAATATAGTTGGCTCCATACACAAGGAGCCTGTAGATGTCCTTAAGGGAATCAGAAATAATGTGGACGGAGAACTAGTCCGCCCTTTTATACCCCCTTTTTGTGAGACTCCGCCCACATGGGTCGAGAGACGCATGTGGGCGGAGTCTAAACTCATGATCAAAAATCGTGTGTTTCCGTCAGTTTGTGCTAAACTCTGAGATTGAAGCATTGACAGAAAGTTGACAAAACATTTCTTTATCAATGAAGACAGCGCCTTGAGGAACCTTTATTGCTCAAAGTTCTTCTGTGGAGGAACAAAACTTTAAGCCAGTATATCTCGGTCTCTGTACAAGATATCAAAAACAGATCAACTAACAAAATACGTTTGACATTATAATGAACACTTTATCAATAAGCCACTTTTAAATATCTTTCTGTTCTTTTAAAGATATCGGAAGAGTGCCAAGGAAAAATGGAAGAATCGACACTATTTTTTTTGTGGGATTTGGTGATTTAAAATAGTAACAAAATTAAAAAATGAAAAAACAAAACTTTTTTATTATCCGATTCAAATAATGCTAAAAATTTGAATTAATTCCTCTGGATCATTTCCCCATCATTTTTTCCTCTTGAGCTCCACCAGAAGTTCCCAGTTCCAACTCTTTGATCTGTAAAAACAACAGTGTTTTCTCATTATTATCCGTTTTATCAAAATATTACTTTTCGAGAATGTCGACTTTCTTTTTCAGAAGCGCATTTTCGGCTCTTTAGTCTGATCGTTGGAGTGACAATTCGTTTCCAATTCGTCCCTCCTAAAAATAAGAGAAATGAATTAAGGTGAAAATAGTTCAGTAACCTTACTTTACGAAAGGACCCTCCTTCAAGTCGGTTCACAATTAAGAGCCGGGAATGGGTTTGGAATTTTTAACAGTCAGCAGTTGTCTCTCCGGGCCGGTTTTTCG</canonical>
            <polymorphic>ATCCGCCAATTTTAAAAATTTTAGAATAAACATTTATAGAATTTAAAAAAAAATCAAGAATATAGTTGGCTCCATACACAAGGAGCCTGTAGATGTCCTTAAGGGAATCAGAAATAATGTGGACGGAGAACTAGTCCGCCCTTTTATACCCCCTTTTTGTGAGACTCCGCCCACATGGGTCGAGAGACGCATGTGGGCGGAGTCTAAACTCATGATCAAAAATCGTGTGTTTCCGTCAGTTTGTGCTAAACTCTGAGATTGAAGCATTGACAGAAAGTTGACAAAACATTTCTTTATCAATGAAGACAGCGCCTTGAGGAACCTTTATTGCTCAAAGTTCTTCTGTGGAGGAACAAAACTTTAAGCCAGTATATCTCGGTCTCTGTACAAGATATCAAAAACAGATCAACTAACAAAATACGTTTGACATTATAATGAACACTTTATCAATAAGCCACTTTTAAATATCTTTCTGTTCTTTTAAAGATATCGGAAGAGTRCCAAGGAAAAATGGAAGAATCGACACTATTTTTTTTGTGGGATTTGGTGATTTAAAATAGTAACAAAATTAAAAAATGAAAAAACAAAACTTTTTTATTATCCGATTCAAATAATGCTAAAAATTTGAATTAATTCCTCTGGATCATTTCCCCATCATTTTTTCCTCTTGAGCTCCACCAGAAGTTCCCAGTTCCAACTCTTTGATCTGTAAAAACAACAGTGTTTTCTCATTATTATCCGTTTTATCAAAATATTACTTTTCGAGAATGTCGACTTTCTTTTTCAGAAGCGCATTTTCGGCTCTTTAGTCTGATCGTTGGAGTGACAATTCGTTTCCAATTCGTCCCTCCTAAAAATAAGAGAAATGAATTAAGGTGAAAATAGTTCAGTAACCTTACTTTACGAAAGGACCCTCCTTCAAGTCGGTTCACAATTAAGAGCCGGGAATGGGTTTGGAATTTTTAACAGTCAGCAGTTGTCTCTCCGGGCCGGTTTTTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>128 102 102 94 78 69 53 53 46 43 43 40 32 25 22 16 16 14 12 10 2</canonical_bands>
                <polymorphic_bands>128 102 102 94 78 69 68 53 53 46 43 40 32 22 16 16 14 12 10 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACCTTTATTGCTCAAAGTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTGTTACTATTTTAAATCACCAAATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAACCTTTATTGCTCAAAGTTCTTCTGTGGAGGAACAAAACTTTAAGCCAGTATATCTCGGTCTCTGTACAAGATATCAAAAACAGATCAACTAACAAAATACGTTTGACATTATAATGAACACTTTATCAATAAGCCACTTTTAAATATCTTTCTGTTCTTTTAAAGATATCGGAAGAGTGCCAAGGAAAAATGGAAGAATCGACACTATTTTTTTTGTGGGATTTGGTGATTTAAAATAGTAACAA</canonical_amplicon>
		<polymorphic_amplicon>GAACCTTTATTGCTCAAAGTTCTTCTGTGGAGGAACAAAACTTTAAGCCAGTATATCTCGGTCTCTGTACAAGATATCAAAAACAGATCAACTAACAAAATACGTTTGACATTATAATGAACACTTTATCAATAAGCCACTTTTAAATATCTTTCTGTTCTTTTAAAGATATCGGAAGAGTRCCAAGGAAAAATGGAAGAATCGACACTATTTTTTTTGTGGGATTTGGTGATTTAAAATAGTAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4785</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>5114</contig_pos>
        <strand>+</strand>
        <context>AAACAAAACT[A/T]TTTTATTATC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTGGTGATTTAAAATAGTAACAAAATTAAAAAATGAAAAAACAAAACT</left_flank>
        <right_flank>TTTTATTATCCGATTCAAATAATGCTAAAAATTTGAATTAATTCCTCTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTCCTTAAGGGAATCAGAAATAATGTGGACGGAGAACTAGTCCGCCCTTTTATACCCCCTTTTTGTGAGACTCCGCCCACATGGGTCGAGAGACGCATGTGGGCGGAGTCTAAACTCATGATCAAAAATCGTGTGTTTCCGTCAGTTTGTGCTAAACTCTGAGATTGAAGCATTGACAGAAAGTTGACAAAACATTTCTTTATCAATGAAGACAGCGCCTTGAGGAACCTTTATTGCTCAAAGTTCTTCTGTGGAGGAACAAAACTTTAAGCCAGTATATCTCGGTCTCTGTACAAGATATCAAAAACAGATCAACTAACAAAATACGTTTGACATTATAATGAACACTTTATCAATAAGCCACTTTTAAATATCTTTCTGTTCTTTTAAAGATATCGGAAGAGTGCCAAGGAAAAATGGAAGAATCGACACTATTTTTTTTGTGGGATTTGGTGATTTAAAATAGTAACAAAATTAAAAAATGAAAAAACAAAACTTTTTTATTATCCGATTCAAATAATGCTAAAAATTTGAATTAATTCCTCTGGATCATTTCCCCATCATTTTTTCCTCTTGAGCTCCACCAGAAGTTCCCAGTTCCAACTCTTTGATCTGTAAAAACAACAGTGTTTTCTCATTATTATCCGTTTTATCAAAATATTACTTTTCGAGAATGTCGACTTTCTTTTTCAGAAGCGCATTTTCGGCTCTTTAGTCTGATCGTTGGAGTGACAATTCGTTTCCAATTCGTCCCTCCTAAAAATAAGAGAAATGAATTAAGGTGAAAATAGTTCAGTAACCTTACTTTACGAAAGGACCCTCCTTCAAGTCGGTTCACAATTAAGAGCCGGGAATGGGTTTGGAATTTTTAACAGTCAGCAGTTGTCTCTCCGGGCCGGTTTTTCGAGAGCCATCCTTCGGTGACGTAGCTTAAAAAACAGTAATTACCATCAACGGAATAATTTTTAATTAATTACCCTCCAAACACCTGACACTGG</canonical>
            <polymorphic>ATGTCCTTAAGGGAATCAGAAATAATGTGGACGGAGAACTAGTCCGCCCTTTTATACCCCCTTTTTGTGAGACTCCGCCCACATGGGTCGAGAGACGCATGTGGGCGGAGTCTAAACTCATGATCAAAAATCGTGTGTTTCCGTCAGTTTGTGCTAAACTCTGAGATTGAAGCATTGACAGAAAGTTGACAAAACATTTCTTTATCAATGAAGACAGCGCCTTGAGGAACCTTTATTGCTCAAAGTTCTTCTGTGGAGGAACAAAACTTTAAGCCAGTATATCTCGGTCTCTGTACAAGATATCAAAAACAGATCAACTAACAAAATACGTTTGACATTATAATGAACACTTTATCAATAAGCCACTTTTAAATATCTTTCTGTTCTTTTAAAGATATCGGAAGAGTGCCAAGGAAAAATGGAAGAATCGACACTATTTTTTTTGTGGGATTTGGTGATTTAAAATAGTAACAAAATTAAAAAATGAAAAAACAAAACTWTTTTATTATCCGATTCAAATAATGCTAAAAATTTGAATTAATTCCTCTGGATCATTTCCCCATCATTTTTTCCTCTTGAGCTCCACCAGAAGTTCCCAGTTCCAACTCTTTGATCTGTAAAAACAACAGTGTTTTCTCATTATTATCCGTTTTATCAAAATATTACTTTTCGAGAATGTCGACTTTCTTTTTCAGAAGCGCATTTTCGGCTCTTTAGTCTGATCGTTGGAGTGACAATTCGTTTCCAATTCGTCCCTCCTAAAAATAAGAGAAATGAATTAAGGTGAAAATAGTTCAGTAACCTTACTTTACGAAAGGACCCTCCTTCAAGTCGGTTCACAATTAAGAGCCGGGAATGGGTTTGGAATTTTTAACAGTCAGCAGTTGTCTCTCCGGGCCGGTTTTTCGAGAGCCATCCTTCGGTGACGTAGCTTAAAAAACAGTAATTACCATCAACGGAATAATTTTTAATTAATTACCCTCCAAACACCTGACACTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGGAAGAATCGACACTAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGATAAAACGGATAATAATGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGGAAGAATCGACACTATTTTTTTTGTGGGATTTGGTGATTTAAAATAGTAACAAAATTAAAAAATGAAAAAACAAAACTTTTTTATTATCCGATTCAAATAATGCTAAAAATTTGAATTAATTCCTCTGGATCATTTCCCCATCATTTTTTCCTCTTGAGCTCCACCAGAAGTTCCCAGTTCCAACTCTTTGATCTGTAAAAACAACAGTGTTTTCTCATTATTATCCGTTTTATCAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGGAAGAATCGACACTATTTTTTTTGTGGGATTTGGTGATTTAAAATAGTAACAAAATTAAAAAATGAAAAAACAAAACTWTTTTATTATCCGATTCAAATAATGCTAAAAATTTGAATTAATTCCTCTGGATCATTTCCCCATCATTTTTTCCTCTTGAGCTCCACCAGAAGTTCCCAGTTCCAACTCTTTGATCTGTAAAAACAACAGTGTTTTCTCATTATTATCCGTTTTATCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4786</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>5181</contig_pos>
        <strand>+</strand>
        <context>TCCCCATCAT[G/T]TTTTCCTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATAATGCTAAAAATTTGAATTAATTCCTCTGGATCATTTCCCCATCAT</left_flank>
        <right_flank>TTTTCCTCTTGAGCTCCACCAGAAGTTCCCAGTTCCAACTCTTTGATCTG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGACTCCGCCCACATGGGTCGAGAGACGCATGTGGGCGGAGTCTAAACTCATGATCAAAAATCGTGTGTTTCCGTCAGTTTGTGCTAAACTCTGAGATTGAAGCATTGACAGAAAGTTGACAAAACATTTCTTTATCAATGAAGACAGCGCCTTGAGGAACCTTTATTGCTCAAAGTTCTTCTGTGGAGGAACAAAACTTTAAGCCAGTATATCTCGGTCTCTGTACAAGATATCAAAAACAGATCAACTAACAAAATACGTTTGACATTATAATGAACACTTTATCAATAAGCCACTTTTAAATATCTTTCTGTTCTTTTAAAGATATCGGAAGAGTGCCAAGGAAAAATGGAAGAATCGACACTATTTTTTTTGTGGGATTTGGTGATTTAAAATAGTAACAAAATTAAAAAATGAAAAAACAAAACTTTTTTATTATCCGATTCAAATAATGCTAAAAATTTGAATTAATTCCTCTGGATCATTTCCCCATCATTTTTTCCTCTTGAGCTCCACCAGAAGTTCCCAGTTCCAACTCTTTGATCTGTAAAAACAACAGTGTTTTCTCATTATTATCCGTTTTATCAAAATATTACTTTTCGAGAATGTCGACTTTCTTTTTCAGAAGCGCATTTTCGGCTCTTTAGTCTGATCGTTGGAGTGACAATTCGTTTCCAATTCGTCCCTCCTAAAAATAAGAGAAATGAATTAAGGTGAAAATAGTTCAGTAACCTTACTTTACGAAAGGACCCTCCTTCAAGTCGGTTCACAATTAAGAGCCGGGAATGGGTTTGGAATTTTTAACAGTCAGCAGTTGTCTCTCCGGGCCGGTTTTTCGAGAGCCATCCTTCGGTGACGTAGCTTAAAAAACAGTAATTACCATCAACGGAATAATTTTTAATTAATTACCCTCCAAACACCTGACACTGGATGAATTGTCCCCCACGACGGTAATAGACATTATTTTATCAGTTTAAAACCGTTATGGCATCTTCCA</canonical>
            <polymorphic>TGAGACTCCGCCCACATGGGTCGAGAGACGCATGTGGGCGGAGTCTAAACTCATGATCAAAAATCGTGTGTTTCCGTCAGTTTGTGCTAAACTCTGAGATTGAAGCATTGACAGAAAGTTGACAAAACATTTCTTTATCAATGAAGACAGCGCCTTGAGGAACCTTTATTGCTCAAAGTTCTTCTGTGGAGGAACAAAACTTTAAGCCAGTATATCTCGGTCTCTGTACAAGATATCAAAAACAGATCAACTAACAAAATACGTTTGACATTATAATGAACACTTTATCAATAAGCCACTTTTAAATATCTTTCTGTTCTTTTAAAGATATCGGAAGAGTGCCAAGGAAAAATGGAAGAATCGACACTATTTTTTTTGTGGGATTTGGTGATTTAAAATAGTAACAAAATTAAAAAATGAAAAAACAAAACTTTTTTATTATCCGATTCAAATAATGCTAAAAATTTGAATTAATTCCTCTGGATCATTTCCCCATCATKTTTTCCTCTTGAGCTCCACCAGAAGTTCCCAGTTCCAACTCTTTGATCTGTAAAAACAACAGTGTTTTCTCATTATTATCCGTTTTATCAAAATATTACTTTTCGAGAATGTCGACTTTCTTTTTCAGAAGCGCATTTTCGGCTCTTTAGTCTGATCGTTGGAGTGACAATTCGTTTCCAATTCGTCCCTCCTAAAAATAAGAGAAATGAATTAAGGTGAAAATAGTTCAGTAACCTTACTTTACGAAAGGACCCTCCTTCAAGTCGGTTCACAATTAAGAGCCGGGAATGGGTTTGGAATTTTTAACAGTCAGCAGTTGTCTCTCCGGGCCGGTTTTTCGAGAGCCATCCTTCGGTGACGTAGCTTAAAAAACAGTAATTACCATCAACGGAATAATTTTTAATTAATTACCCTCCAAACACCTGACACTGGATGAATTGTCCCCCACGACGGTAATAGACATTATTTTATCAGTTTAAAACCGTTATGGCATCTTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGGAAGAATCGACACTAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGATAAAACGGATAATAATGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGGAAGAATCGACACTATTTTTTTTGTGGGATTTGGTGATTTAAAATAGTAACAAAATTAAAAAATGAAAAAACAAAACTTTTTTATTATCCGATTCAAATAATGCTAAAAATTTGAATTAATTCCTCTGGATCATTTCCCCATCATTTTTTCCTCTTGAGCTCCACCAGAAGTTCCCAGTTCCAACTCTTTGATCTGTAAAAACAACAGTGTTTTCTCATTATTATCCGTTTTATCAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGGAAGAATCGACACTATTTTTTTTGTGGGATTTGGTGATTTAAAATAGTAACAAAATTAAAAAATGAAAAAACAAAACTTTTTTATTATCCGATTCAAATAATGCTAAAAATTTGAATTAATTCCTCTGGATCATTTCCCCATCATKTTTTCCTCTTGAGCTCCACCAGAAGTTCCCAGTTCCAACTCTTTGATCTGTAAAAACAACAGTGTTTTCTCATTATTATCCGTTTTATCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4787</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>5227</contig_pos>
        <strand></strand>
        <context>CAACTCTTTG[A/G]TCTGTAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATTTTTTCCTCTTGAGCTCCACCAGAAGTTCCCAGTTCCAACTCTTTG</left_flank>
        <right_flank>TCTGTAAAAACAACAGTGTTTTCTCATTATTATCCGTTTTATCAAAATAT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTCATGATCAAAAATCGTGTGTTTCCGTCAGTTTGTGCTAAACTCTGAGATTGAAGCATTGACAGAAAGTTGACAAAACATTTCTTTATCAATGAAGACAGCGCCTTGAGGAACCTTTATTGCTCAAAGTTCTTCTGTGGAGGAACAAAACTTTAAGCCAGTATATCTCGGTCTCTGTACAAGATATCAAAAACAGATCAACTAACAAAATACGTTTGACATTATAATGAACACTTTATCAATAAGCCACTTTTAAATATCTTTCTGTTCTTTTAAAGATATCGGAAGAGTGCCAAGGAAAAATGGAAGAATCGACACTATTTTTTTTGTGGGATTTGGTGATTTAAAATAGTAACAAAATTAAAAAATGAAAAAACAAAACTTTTTTATTATCCGATTCAAATAATGCTAAAAATTTGAATTAATTCCTCTGGATCATTTCCCCATCATTTTTTCCTCTTGAGCTCCACCAGAAGTTCCCAGTTCCAACTCTTTGATCTGTAAAAACAACAGTGTTTTCTCATTATTATCCGTTTTATCAAAATATTACTTTTCGAGAATGTCGACTTTCTTTTTCAGAAGCGCATTTTCGGCTCTTTAGTCTGATCGTTGGAGTGACAATTCGTTTCCAATTCGTCCCTCCTAAAAATAAGAGAAATGAATTAAGGTGAAAATAGTTCAGTAACCTTACTTTACGAAAGGACCCTCCTTCAAGTCGGTTCACAATTAAGAGCCGGGAATGGGTTTGGAATTTTTAACAGTCAGCAGTTGTCTCTCCGGGCCGGTTTTTCGAGAGCCATCCTTCGGTGACGTAGCTTAAAAAACAGTAATTACCATCAACGGAATAATTTTTAATTAATTACCCTCCAAACACCTGACACTGGATGAATTGTCCCCCACGACGGTAATAGACATTATTTTATCAGTTTAAAACCGTTATGGCATCTTCCACCTTTTTTCGATAGCAGATTTCTTCCATTTTAACAATTATGGCAAC</canonical>
            <polymorphic>AAACTCATGATCAAAAATCGTGTGTTTCCGTCAGTTTGTGCTAAACTCTGAGATTGAAGCATTGACAGAAAGTTGACAAAACATTTCTTTATCAATGAAGACAGCGCCTTGAGGAACCTTTATTGCTCAAAGTTCTTCTGTGGAGGAACAAAACTTTAAGCCAGTATATCTCGGTCTCTGTACAAGATATCAAAAACAGATCAACTAACAAAATACGTTTGACATTATAATGAACACTTTATCAATAAGCCACTTTTAAATATCTTTCTGTTCTTTTAAAGATATCGGAAGAGTGCCAAGGAAAAATGGAAGAATCGACACTATTTTTTTTGTGGGATTTGGTGATTTAAAATAGTAACAAAATTAAAAAATGAAAAAACAAAACTTTTTTATTATCCGATTCAAATAATGCTAAAAATTTGAATTAATTCCTCTGGATCATTTCCCCATCATTTTTTCCTCTTGAGCTCCACCAGAAGTTCCCAGTTCCAACTCTTTGRTCTGTAAAAACAACAGTGTTTTCTCATTATTATCCGTTTTATCAAAATATTACTTTTCGAGAATGTCGACTTTCTTTTTCAGAAGCGCATTTTCGGCTCTTTAGTCTGATCGTTGGAGTGACAATTCGTTTCCAATTCGTCCCTCCTAAAAATAAGAGAAATGAATTAAGGTGAAAATAGTTCAGTAACCTTACTTTACGAAAGGACCCTCCTTCAAGTCGGTTCACAATTAAGAGCCGGGAATGGGTTTGGAATTTTTAACAGTCAGCAGTTGTCTCTCCGGGCCGGTTTTTCGAGAGCCATCCTTCGGTGACGTAGCTTAAAAAACAGTAATTACCATCAACGGAATAATTTTTAATTAATTACCCTCCAAACACCTGACACTGGATGAATTGTCCCCCACGACGGTAATAGACATTATTTTATCAGTTTAAAACCGTTATGGCATCTTCCACCTTTTTTCGATAGCAGATTTCTTCCATTTTAACAATTATGGCAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>393 238 190 109 62 8</canonical_bands>
                <polymorphic_bands>393 238 190 171 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGATTTGGTGATTTAAAATAGT</pcr_primer_p1>
		<pcr_primer_p2>GTCGACATTCTCGAAAAGTAATA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GGGATTTGGTGATTTAAAATAGTAACAAAATTAAAAAATGAAAAAACAAAACTTTTTTATTATCCGATTCAAATAATGCTAAAAATTTGAATTAATTCCTCTGGATCATTTCCCCATCATTTTTTCCTCTTGAGCTCCACCAGAAGTTCCCAGTTCCAACTCTTTGATCTGTAAAAACAACAGTGTTTTCTCATTATTATCCGTTTTATCAAAATATTACTTTTCGAGAATGTCGAC</canonical_amplicon>
		<polymorphic_amplicon>GGGATTTGGTGATTTAAAATAGTAACAAAATTAAAAAATGAAAAAACAAAACTTTTTTATTATCCGATTCAAATAATGCTAAAAATTTGAATTAATTCCTCTGGATCATTTCCCCATCATTTTTTCCTCTTGAGCTCCACCAGAAGTTCCCAGTTCCAACTCTTTGRTCTGTAAAAACAACAGTGTTTTCTCATTATTATCCGTTTTATCAAAATATTACTTTTCGAGAATGTCGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4788</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>6855</contig_pos>
        <strand>+</strand>
        <context>ATGTGGCAGT[C/T]TTTTGACAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAATAAGCAATCGGAACTCTATGTATTGGCGAGAGAAGAATGTGGCAGT</left_flank>
        <right_flank>TTTTGACAGACTATGCAGACTATGACAGACTATGTAACTATGCATAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTGAAATTAGATTTTTTCCAGTTCAAAATCGTTGATCTCGCTTCGTTGGATATTCATTTAAAAAAAGTTATCAATTACAAAAATGAAGCTCTATTTTTGCTTATTATATTCTAGAATTTTCAGAGAAATCAAACAATTTTGGTCTGCTTTTTAGGGCATCGAAAATGAGGACTCCAAAACCACTCACCATTTTGAATATCCGCGAACTAAATAAAATTTCAGAATAAATATTTATAGAATTTAAATAAAAATCAAGAATCGTATGGCCTTCATGCAGAAAGTGGCCTGTAGATGTCCTAAAGGGACATCAGAAATAATGTGAATAGAGAACTAGGGCGCTCTTTTATACCCCTTTTTTTTGGTAGGCTCCGCCCACATGGGTCGAGGGCACATGTGGGCGGAGTCTATAGTATAGAAGTTCTGGATAAATGTGACAGGATAGAATCATGAATAAGCAATCGGAACTCTATGTATTGGCGAGAGAAGAATGTGGCAGTTTTTTGACAGACTATGCAGACTATGACAGACTATGTAACTATGCATAAAAAAAAACCGTTTTCTACATACCGTAAAACCTCTAATAGAACGACACCAGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGTGAAAGATATCAAAAAAGTGGTTAACTAGTAAAATNNNNNNNNNNNNAAAATTTGGAATCAAAAAATAGACGGGCATCATCTCGCTGCTATTTCGAATCATCTGGGAAAATTGGAAAATTTTCGGTCTACCGGGGACTTCGCTAGGGTCGTGGAACCGGGAACAAACGGACACACAGACAGAATTTGGTGATTGTAAAGATTCCCTCTCTCGCCACCAGAGTTTGAAGTGCTTATTCATGATTCAGGTGTCCCTCGACCCACCGGGTGTCGTTCTATTAGAGGTTTTACGGTATATATGAATAGTGGGCTTTTTCTTTCCATTTTCAAGAGTGCCAAAGACACCCAAGGGTGGTTCAAACTCAATTT</canonical>
            <polymorphic>CACTGAAATTAGATTTTTTCCAGTTCAAAATCGTTGATCTCGCTTCGTTGGATATTCATTTAAAAAAAGTTATCAATTACAAAAATGAAGCTCTATTTTTGCTTATTATATTCTAGAATTTTCAGAGAAATCAAACAATTTTGGTCTGCTTTTTAGGGCATCGAAAATGAGGACTCCAAAACCACTCACCATTTTGAATATCCGCGAACTAAATAAAATTTCAGAATAAATATTTATAGAATTTAAATAAAAATCAAGAATCGTATGGCCTTCATGCAGAAAGTGGCCTGTAGATGTCCTAAAGGGACATCAGAAATAATGTGAATAGAGAACTAGGGCGCTCTTTTATACCCCTTTTTTTTGGTAGGCTCCGCCCACATGGGTCGAGGGCACATGTGGGCGGAGTCTATAGTATAGAAGTTCTGGATAAATGTGACAGGATAGAATCATGAATAAGCAATCGGAACTCTATGTATTGGCGAGAGAAGAATGTGGCAGTYTTTTGACAGACTATGCAGACTATGACAGACTATGTAACTATGCATAAAAAAAAACCGTTTTCTACATACCGTAAAACCTCTAATAGAACGACACCAGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGTGAAAGATATCAAAAAAGTGGTTAACTAGTAAAATNNNNNNNNNNNNAAAATTTGGAATCAAAAAATAGACGGGCATCATCTCGCTGCTATTTCGAATCATCTGGGAAAATTGGAAAATTTTCGGTCTACCGGGGACTTCGCTAGGGTCGTGGAACCGGGAACAAACGGACACACAGACAGAATTTGGTGATTGTAAAGATTCCCTCTCTCGCCACCAGAGTTTGAAGTGCTTATTCATGATTCAGGTGTCCCTCGACCCACCGGGTGTCGTTCTATTAGAGGTTTTACGGTATATATGAATAGTGGGCTTTTTCTTTCCATTTTCAAGAGTGCCAAAGACACCCAAGGGTGGTTCAAACTCAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATAAGCAATCGGAACTC</pcr_primer_p1>
		<pcr_primer_p2>AATAAGCACTTCAAACTCTGGT</pcr_primer_p2>
		<pcr_amplicon_size>420</pcr_amplicon_size>
		<canonical_amplicon>TGAATAAGCAATCGGAACTCTATGTATTGGCGAGAGAAGAATGTGGCAGTTTTTTGACAGACTATGCAGACTATGACAGACTATGTAACTATGCATAAAAAAAAACCGTTTTCTACATACCGTAAAACCTCTAATAGAACGACACCAGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGTGAAAGATATCAAAAAAGTGGTTAACTAGTAAAATNNNNNNNNNNNNAAAATTTGGAATCAAAAAATAGACGGGCATCATCTCGCTGCTATTTCGAATCATCTGGGAAAATTGGAAAATTTTCGGTCTACCGGGGACTTCGCTAGGGTCGTGGAACCGGGAACAAACGGACACACAGACAGAATTTGGTGATTGTAAAGATTCCCTCTCTCGCCACCAGAGTTTGAAGTGCTTATT</canonical_amplicon>
		<polymorphic_amplicon>TGAATAAGCAATCGGAACTCTATGTATTGGCGAGAGAAGAATGTGGCAGTYTTTTGACAGACTATGCAGACTATGACAGACTATGTAACTATGCATAAAAAAAAACCGTTTTCTACATACCGTAAAACCTCTAATAGAACGACACCAGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGTGAAAGATATCAAAAAAGTGGTTAACTAGTAAAATNNNNNNNNNNNNAAAATTTGGAATCAAAAAATAGACGGGCATCATCTCGCTGCTATTTCGAATCATCTGGGAAAATTGGAAAATTTTCGGTCTACCGGGGACTTCGCTAGGGTCGTGGAACCGGGAACAAACGGACACACAGACAGAATTTGGTGATTGTAAAGATTCCCTCTCTCGCCACCAGAGTTTGAAGTGCTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4795</snp_id>
        <super_contig>c002601468.Contig2</super_contig>
        <contig_pos>22032</contig_pos>
        <strand>+</strand>
        <context>CCGTAGCAAA[A/T]AATTTTGAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGTATGAAAGTTTCAGAAATCAAAAAAATCGCCGTCGTTCCGTAGCAAA</left_flank>
        <right_flank>AATTTTGAAGCTCATTGTAAATGAGCTCCGTTCAAATCGAATTTTCTGAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGAAGGCGCAGCAGCCAGCAGGGTGGTTTTTAATAACTTTCAAAGTGATTTTTTATTCCAAAAATGTTTTTTCTCAAAAAACAAAAATTCTCTTTTTAGGTGCTCCTTTAAGATTTGAATCAATATAATCCATCAAAACAATAATCATAAACCAATTAAGTGCACAACTGAAATGAGCAATATCGTTCCAATCGATGCCAGGAAGAATGCAATTTTGGTTGAGCACACGAGATTTTGCAGGGCTTAGCTGGAAAACAAACGCACTTGGAAGCAATTTATCTCGGCTCTTTTGAAAGAAATCTAGAAGTGGTCAATTGATAAAAAATTCATTATCACATAAATAATATTTTGTTAGTTGACCACTTTCTCATACCTTCAACAGGAAACGAGATATACGAGCTCAACTTACCTGTACAGAATAGGTCCTCAACTGATGATAAAAAATGTCGTGTATGAAAGTTTCAGAAATCAAAAAAATCGCCGTCGTTCCGTAGCAAATAATTTTGAAGCTCATTGTAAATGAGCTCCGTTCAAATCGAATTTTCTGAATCAAATAGTAGCAAAAATAGATGCCAACTTGTCCTTTTGCCCAGTCGAACGACGAATAGATTACGGTATTTTTAGGGTTTAGCAGAGCAGTGACAGGGCTGGAAATCTCTTTTTCAAGCTAACAAGGTCTTCAAAAACTCACATATAAACCGAAAACCCCATTGCTAGAACCATGTAACAAATTTTGGATTTCAAAGGCCTGTACACTCCATTGGCATCGCATAGGGTTGGCCCGGTAGAGAATAGAGATGGGATCCATTGACTTACTTGAAGACCTGAGGGTCTCTGTAGAGATTTGAAATTTTGGAGAAAATAACCTTTGCCAATACTAACCTCAAAATAGTACTTGTAGCAGAAAAAACCAGTAGAACTTATTGTGACCAACAGAAAGATGATTTTGAGGGGTGTTGTAGAAGATTCGGTAGATTCGAAGATCTGAAAATTTGGGAA</canonical>
            <polymorphic>CCGAAGGCGCAGCAGCCAGCAGGGTGGTTTTTAATAACTTTCAAAGTGATTTTTTATTCCAAAAATGTTTTTTCTCAAAAAACAAAAATTCTCTTTTTAGGTGCTCCTTTAAGATTTGAATCAATATAATCCATCAAAACAATAATCATAAACCAATTAAGTGCACAACTGAAATGAGCAATATCGTTCCAATCGATGCCAGGAAGAATGCAATTTTGGTTGAGCACACGAGATTTTGCAGGGCTTAGCTGGAAAACAAACGCACTTGGAAGCAATTTATCTCGGCTCTTTTGAAAGAAATCTAGAAGTGGTCAATTGATAAAAAATTCATTATCACATAAATAATATTTTGTTAGTTGACCACTTTCTCATACCTTCAACAGGAAACGAGATATACGAGCTCAACTTACCTGTACAGAATAGGTCCTCAACTGATGATAAAAAATGTCGTGTATGAAAGTTTCAGAAATCAAAAAAATCGCCGTCGTTCCGTAGCAAAWAATTTTGAAGCTCATTGTAAATGAGCTCCGTTCAAATCGAATTTTCTGAATCAAATAGTAGCAAAAATAGATGCCAACTTGTCCTTTTGCCCAGTCGAACGACGAATAGATTACGGTATTTTTAGGGTTTAGCAGAGCAGTGACAGGGCTGGAAATCTCTTTTTCAAGCTAACAAGGTCTTCAAAAACTCACATATAAACCGAAAACCCCATTGCTAGAACCATGTAACAAATTTTGGATTTCAAAGGCCTGTACACTCCATTGGCATCGCATAGGGTTGGCCCGGTAGAGAATAGAGATGGGATCCATTGACTTACTTGAAGACCTGAGGGTCTCTGTAGAGATTTGAAATTTTGGAGAAAATAACCTTTGCCAATACTAACCTCAAAATAGTACTTGTAGCAGAAAAAACCAGTAGAACTTATTGTGACCAACAGAAAGATGATTTTGAGGGGTGTTGTAGAAGATTCGGTAGATTCGAAGATCTGAAAATTTGGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGGTCCTCAACTGATGATAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGTTAGCTTGAAAAAGAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TAGGTCCTCAACTGATGATAAAAAATGTCGTGTATGAAAGTTTCAGAAATCAAAAAAATCGCCGTCGTTCCGTAGCAAATAATTTTGAAGCTCATTGTAAATGAGCTCCGTTCAAATCGAATTTTCTGAATCAAATAGTAGCAAAAATAGATGCCAACTTGTCCTTTTGCCCAGTCGAACGACGAATAGATTACGGTATTTTTAGGGTTTAGCAGAGCAGTGACAGGGCTGGAAATCTCTTTTTCAAGCTAACAA</canonical_amplicon>
		<polymorphic_amplicon>TAGGTCCTCAACTGATGATAAAAAATGTCGTGTATGAAAGTTTCAGAAATCAAAAAAATCGCCGTCGTTCCGTAGCAAAWAATTTTGAAGCTCATTGTAAATGAGCTCCGTTCAAATCGAATTTTCTGAATCAAATAGTAGCAAAAATAGATGCCAACTTGTCCTTTTGCCCAGTCGAACGACGAATAGATTACGGTATTTTTAGGGTTTAGCAGAGCAGTGACAGGGCTGGAAATCTCTTTTTCAAGCTAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4796</snp_id>
        <super_contig>c002601468.Contig2</super_contig>
        <contig_pos>22044</contig_pos>
        <strand>+</strand>
        <context>ATTTTGAAGC[A/T]CATTGTAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCAGAAATCAAAAAAATCGCCGTCGTTCCGTAGCAAATAATTTTGAAGC</left_flank>
        <right_flank>CATTGTAAATGAGCTCCGTTCAAATCGAATTTTCTGAATCAAATAGTAGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGCCAGCAGGGTGGTTTTTAATAACTTTCAAAGTGATTTTTTATTCCAAAAATGTTTTTTCTCAAAAAACAAAAATTCTCTTTTTAGGTGCTCCTTTAAGATTTGAATCAATATAATCCATCAAAACAATAATCATAAACCAATTAAGTGCACAACTGAAATGAGCAATATCGTTCCAATCGATGCCAGGAAGAATGCAATTTTGGTTGAGCACACGAGATTTTGCAGGGCTTAGCTGGAAAACAAACGCACTTGGAAGCAATTTATCTCGGCTCTTTTGAAAGAAATCTAGAAGTGGTCAATTGATAAAAAATTCATTATCACATAAATAATATTTTGTTAGTTGACCACTTTCTCATACCTTCAACAGGAAACGAGATATACGAGCTCAACTTACCTGTACAGAATAGGTCCTCAACTGATGATAAAAAATGTCGTGTATGAAAGTTTCAGAAATCAAAAAAATCGCCGTCGTTCCGTAGCAAATAATTTTGAAGCTCATTGTAAATGAGCTCCGTTCAAATCGAATTTTCTGAATCAAATAGTAGCAAAAATAGATGCCAACTTGTCCTTTTGCCCAGTCGAACGACGAATAGATTACGGTATTTTTAGGGTTTAGCAGAGCAGTGACAGGGCTGGAAATCTCTTTTTCAAGCTAACAAGGTCTTCAAAAACTCACATATAAACCGAAAACCCCATTGCTAGAACCATGTAACAAATTTTGGATTTCAAAGGCCTGTACACTCCATTGGCATCGCATAGGGTTGGCCCGGTAGAGAATAGAGATGGGATCCATTGACTTACTTGAAGACCTGAGGGTCTCTGTAGAGATTTGAAATTTTGGAGAAAATAACCTTTGCCAATACTAACCTCAAAATAGTACTTGTAGCAGAAAAAACCAGTAGAACTTATTGTGACCAACAGAAAGATGATTTTGAGGGGTGTTGTAGAAGATTCGGTAGATTCGAAGATCTGAAAATTTGGGAAATTGTTGAATTG</canonical>
            <polymorphic>CAGCCAGCAGGGTGGTTTTTAATAACTTTCAAAGTGATTTTTTATTCCAAAAATGTTTTTTCTCAAAAAACAAAAATTCTCTTTTTAGGTGCTCCTTTAAGATTTGAATCAATATAATCCATCAAAACAATAATCATAAACCAATTAAGTGCACAACTGAAATGAGCAATATCGTTCCAATCGATGCCAGGAAGAATGCAATTTTGGTTGAGCACACGAGATTTTGCAGGGCTTAGCTGGAAAACAAACGCACTTGGAAGCAATTTATCTCGGCTCTTTTGAAAGAAATCTAGAAGTGGTCAATTGATAAAAAATTCATTATCACATAAATAATATTTTGTTAGTTGACCACTTTCTCATACCTTCAACAGGAAACGAGATATACGAGCTCAACTTACCTGTACAGAATAGGTCCTCAACTGATGATAAAAAATGTCGTGTATGAAAGTTTCAGAAATCAAAAAAATCGCCGTCGTTCCGTAGCAAATAATTTTGAAGCWCATTGTAAATGAGCTCCGTTCAAATCGAATTTTCTGAATCAAATAGTAGCAAAAATAGATGCCAACTTGTCCTTTTGCCCAGTCGAACGACGAATAGATTACGGTATTTTTAGGGTTTAGCAGAGCAGTGACAGGGCTGGAAATCTCTTTTTCAAGCTAACAAGGTCTTCAAAAACTCACATATAAACCGAAAACCCCATTGCTAGAACCATGTAACAAATTTTGGATTTCAAAGGCCTGTACACTCCATTGGCATCGCATAGGGTTGGCCCGGTAGAGAATAGAGATGGGATCCATTGACTTACTTGAAGACCTGAGGGTCTCTGTAGAGATTTGAAATTTTGGAGAAAATAACCTTTGCCAATACTAACCTCAAAATAGTACTTGTAGCAGAAAAAACCAGTAGAACTTATTGTGACCAACAGAAAGATGATTTTGAGGGGTGTTGTAGAAGATTCGGTAGATTCGAAGATCTGAAAATTTGGGAAATTGTTGAATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>344 236 152 143 110 15</canonical_bands>
                <polymorphic_bands>344 236 152 143 125</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>231 228 123 115 110 80 37 33 20 15 5 3</canonical_bands>
                <polymorphic_bands>231 228 125 123 115 80 37 33 20 5 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGGTCCTCAACTGATGATAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGTTAGCTTGAAAAAGAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TAGGTCCTCAACTGATGATAAAAAATGTCGTGTATGAAAGTTTCAGAAATCAAAAAAATCGCCGTCGTTCCGTAGCAAATAATTTTGAAGCTCATTGTAAATGAGCTCCGTTCAAATCGAATTTTCTGAATCAAATAGTAGCAAAAATAGATGCCAACTTGTCCTTTTGCCCAGTCGAACGACGAATAGATTACGGTATTTTTAGGGTTTAGCAGAGCAGTGACAGGGCTGGAAATCTCTTTTTCAAGCTAACAA</canonical_amplicon>
		<polymorphic_amplicon>TAGGTCCTCAACTGATGATAAAAAATGTCGTGTATGAAAGTTTCAGAAATCAAAAAAATCGCCGTCGTTCCGTAGCAAATAATTTTGAAGCWCATTGTAAATGAGCTCCGTTCAAATCGAATTTTCTGAATCAAATAGTAGCAAAAATAGATGCCAACTTGTCCTTTTGCCCAGTCGAACGACGAATAGATTACGGTATTTTTAGGGTTTAGCAGAGCAGTGACAGGGCTGGAAATCTCTTTTTCAAGCTAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4797</snp_id>
        <super_contig>c002601468.Contig2</super_contig>
        <contig_pos>22239</contig_pos>
        <strand>+</strand>
        <context>AAACCGAAAA[C/T]CCCATTGCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCTTTTTCAAGCTAACAAGGTCTTCAAAAACTCACATATAAACCGAAAA</left_flank>
        <right_flank>CCCATTGCTAGAACCATGTAACAAATTTTGGATTTCAAAGGCCTGTACAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCAATTTTGGTTGAGCACACGAGATTTTGCAGGGCTTAGCTGGAAAACAAACGCACTTGGAAGCAATTTATCTCGGCTCTTTTGAAAGAAATCTAGAAGTGGTCAATTGATAAAAAATTCATTATCACATAAATAATATTTTGTTAGTTGACCACTTTCTCATACCTTCAACAGGAAACGAGATATACGAGCTCAACTTACCTGTACAGAATAGGTCCTCAACTGATGATAAAAAATGTCGTGTATGAAAGTTTCAGAAATCAAAAAAATCGCCGTCGTTCCGTAGCAAATAATTTTGAAGCTCATTGTAAATGAGCTCCGTTCAAATCGAATTTTCTGAATCAAATAGTAGCAAAAATAGATGCCAACTTGTCCTTTTGCCCAGTCGAACGACGAATAGATTACGGTATTTTTAGGGTTTAGCAGAGCAGTGACAGGGCTGGAAATCTCTTTTTCAAGCTAACAAGGTCTTCAAAAACTCACATATAAACCGAAAACCCCATTGCTAGAACCATGTAACAAATTTTGGATTTCAAAGGCCTGTACACTCCATTGGCATCGCATAGGGTTGGCCCGGTAGAGAATAGAGATGGGATCCATTGACTTACTTGAAGACCTGAGGGTCTCTGTAGAGATTTGAAATTTTGGAGAAAATAACCTTTGCCAATACTAACCTCAAAATAGTACTTGTAGCAGAAAAAACCAGTAGAACTTATTGTGACCAACAGAAAGATGATTTTGAGGGGTGTTGTAGAAGATTCGGTAGATTCGAAGATCTGAAAATTTGGGAAATTGTTGAATTGCATTTTGTTTTGTAGGACTATTTGAAAGCTACATTTCAATTTTTAGATTTAAAAAAAAATCTTTAGTTTGAAAGAAATTATGGGCTAACGCCTGTGGTGACCCATATCGTCCGGGTTTCTATCGTACCGTCCAGTTTCAACGGCTTCGTCACCTAACCCTCCCAGCTTTAACGGCTCGCCTTCAAAGAGATAAGA</canonical>
            <polymorphic>ATGCAATTTTGGTTGAGCACACGAGATTTTGCAGGGCTTAGCTGGAAAACAAACGCACTTGGAAGCAATTTATCTCGGCTCTTTTGAAAGAAATCTAGAAGTGGTCAATTGATAAAAAATTCATTATCACATAAATAATATTTTGTTAGTTGACCACTTTCTCATACCTTCAACAGGAAACGAGATATACGAGCTCAACTTACCTGTACAGAATAGGTCCTCAACTGATGATAAAAAATGTCGTGTATGAAAGTTTCAGAAATCAAAAAAATCGCCGTCGTTCCGTAGCAAATAATTTTGAAGCTCATTGTAAATGAGCTCCGTTCAAATCGAATTTTCTGAATCAAATAGTAGCAAAAATAGATGCCAACTTGTCCTTTTGCCCAGTCGAACGACGAATAGATTACGGTATTTTTAGGGTTTAGCAGAGCAGTGACAGGGCTGGAAATCTCTTTTTCAAGCTAACAAGGTCTTCAAAAACTCACATATAAACCGAAAAYCCCATTGCTAGAACCATGTAACAAATTTTGGATTTCAAAGGCCTGTACACTCCATTGGCATCGCATAGGGTTGGCCCGGTAGAGAATAGAGATGGGATCCATTGACTTACTTGAAGACCTGAGGGTCTCTGTAGAGATTTGAAATTTTGGAGAAAATAACCTTTGCCAATACTAACCTCAAAATAGTACTTGTAGCAGAAAAAACCAGTAGAACTTATTGTGACCAACAGAAAGATGATTTTGAGGGGTGTTGTAGAAGATTCGGTAGATTCGAAGATCTGAAAATTTGGGAAATTGTTGAATTGCATTTTGTTTTGTAGGACTATTTGAAAGCTACATTTCAATTTTTAGATTTAAAAAAAAATCTTTAGTTTGAAAGAAATTATGGGCTAACGCCTGTGGTGACCCATATCGTCCGGGTTTCTATCGTACCGTCCAGTTTCAACGGCTTCGTCACCTAACCCTCCCAGCTTTAACGGCTCGCCTTCAAAGAGATAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACGGTATTTTTAGGGTTTAGC</pcr_primer_p1>
		<pcr_primer_p2>CTCCAAAATTTCAAATCTCTACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTACGGTATTTTTAGGGTTTAGCAGAGCAGTGACAGGGCTGGAAATCTCTTTTTCAAGCTAACAAGGTCTTCAAAAACTCACATATAAACCGAAAACCCCATTGCTAGAACCATGTAACAAATTTTGGATTTCAAAGGCCTGTACACTCCATTGGCATCGCATAGGGTTGGCCCGGTAGAGAATAGAGATGGGATCCATTGACTTACTTGAAGACCTGAGGGTCTCTGTAGAGATTTGAAATTTTGGAG</canonical_amplicon>
		<polymorphic_amplicon>TTACGGTATTTTTAGGGTTTAGCAGAGCAGTGACAGGGCTGGAAATCTCTTTTTCAAGCTAACAAGGTCTTCAAAAACTCACATATAAACCGAAAAYCCCATTGCTAGAACCATGTAACAAATTTTGGATTTCAAAGGCCTGTACACTCCATTGGCATCGCATAGGGTTGGCCCGGTAGAGAATAGAGATGGGATCCATTGACTTACTTGAAGACCTGAGGGTCTCTGTAGAGATTTGAAATTTTGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4798</snp_id>
        <super_contig>c002601468.Contig2</super_contig>
        <contig_pos>22348</contig_pos>
        <strand>+</strand>
        <context>CCATTGACTT[A/T]CTTGAAGRCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATCGCATAGGGTTGGCCCGGTAGAGAATAGAGATGGGATCCATTGACTT</left_flank>
        <right_flank>CTTGAAGACCTGAGGGTCTCTGTAGAGATTTGAAATTTTGGAGAAAATAA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATAAAAAATTCATTATCACATAAATAATATTTTGTTAGTTGACCACTTTCTCATACCTTCAACAGGAAACGAGATATACGAGCTCAACTTACCTGTACAGAATAGGTCCTCAACTGATGATAAAAAATGTCGTGTATGAAAGTTTCAGAAATCAAAAAAATCGCCGTCGTTCCGTAGCAAATAATTTTGAAGCTCATTGTAAATGAGCTCCGTTCAAATCGAATTTTCTGAATCAAATAGTAGCAAAAATAGATGCCAACTTGTCCTTTTGCCCAGTCGAACGACGAATAGATTACGGTATTTTTAGGGTTTAGCAGAGCAGTGACAGGGCTGGAAATCTCTTTTTCAAGCTAACAAGGTCTTCAAAAACTCACATATAAACCGAAAACCCCATTGCTAGAACCATGTAACAAATTTTGGATTTCAAAGGCCTGTACACTCCATTGGCATCGCATAGGGTTGGCCCGGTAGAGAATAGAGATGGGATCCATTGACTTACTTGAAGACCTGAGGGTCTCTGTAGAGATTTGAAATTTTGGAGAAAATAACCTTTGCCAATACTAACCTCAAAATAGTACTTGTAGCAGAAAAAACCAGTAGAACTTATTGTGACCAACAGAAAGATGATTTTGAGGGGTGTTGTAGAAGATTCGGTAGATTCGAAGATCTGAAAATTTGGGAAATTGTTGAATTGCATTTTGTTTTGTAGGACTATTTGAAAGCTACATTTCAATTTTTAGATTTAAAAAAAAATCTTTAGTTTGAAAGAAATTATGGGCTAACGCCTGTGGTGACCCATATCGTCCGGGTTTCTATCGTACCGTCCAGTTTCAACGGCTTCGTCACCTAACCCTCCCAGCTTTAACGGCTCGCCTTCAAAGAGATAAGATTTCCAAATTTATTATAGTTTTCATAGATTTGTAGAACTTTTAAAGATCTATAAACTCCTTTTTGGATTTTTCAAAAAATGTTAAATTTGAACGAAGTTATAAGTTAAC</canonical>
            <polymorphic>TGATAAAAAATTCATTATCACATAAATAATATTTTGTTAGTTGACCACTTTCTCATACCTTCAACAGGAAACGAGATATACGAGCTCAACTTACCTGTACAGAATAGGTCCTCAACTGATGATAAAAAATGTCGTGTATGAAAGTTTCAGAAATCAAAAAAATCGCCGTCGTTCCGTAGCAAATAATTTTGAAGCTCATTGTAAATGAGCTCCGTTCAAATCGAATTTTCTGAATCAAATAGTAGCAAAAATAGATGCCAACTTGTCCTTTTGCCCAGTCGAACGACGAATAGATTACGGTATTTTTAGGGTTTAGCAGAGCAGTGACAGGGCTGGAAATCTCTTTTTCAAGCTAACAAGGTCTTCAAAAACTCACATATAAACCGAAAACCCCATTGCTAGAACCATGTAACAAATTTTGGATTTCAAAGGCCTGTACACTCCATTGGCATCGCATAGGGTTGGCCCGGTAGAGAATAGAGATGGGATCCATTGACTTWCTTGAAGACCTGAGGGTCTCTGTAGAGATTTGAAATTTTGGAGAAAATAACCTTTGCCAATACTAACCTCAAAATAGTACTTGTAGCAGAAAAAACCAGTAGAACTTATTGTGACCAACAGAAAGATGATTTTGAGGGGTGTTGTAGAAGATTCGGTAGATTCGAAGATCTGAAAATTTGGGAAATTGTTGAATTGCATTTTGTTTTGTAGGACTATTTGAAAGCTACATTTCAATTTTTAGATTTAAAAAAAAATCTTTAGTTTGAAAGAAATTATGGGCTAACGCCTGTGGTGACCCATATCGTCCGGGTTTCTATCGTACCGTCCAGTTTCAACGGCTTCGTCACCTAACCCTCCCAGCTTTAACGGCTCGCCTTCAAAGAGATAAGATTTCCAAATTTATTATAGTTTTCATAGATTTGTAGAACTTTTAAAGATCTATAAACTCCTTTTTGGATTTTTCAAAAAATGTTAAATTTGAACGAAGTTATAAGTTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTTCAAGCTAACAAGGTC</pcr_primer_p1>
		<pcr_primer_p2>TGCTACAAGTACTATTTTGAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTTCAAGCTAACAAGGTCTTCAAAAACTCACATATAAACCGAAAACCCCATTGCTAGAACCATGTAACAAATTTTGGATTTCAAAGGCCTGTACACTCCATTGGCATCGCATAGGGTTGGCCCGGTAGAGAATAGAGATGGGATCCATTGACTTACTTGAAGACCTGAGGGTCTCTGTAGAGATTTGAAATTTTGGAGAAAATAACCTTTGCCAATACTAACCTCAAAATAGTACTTGTAGCA</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTTCAAGCTAACAAGGTCTTCAAAAACTCACATATAAACCGAAAACCCCATTGCTAGAACCATGTAACAAATTTTGGATTTCAAAGGCCTGTACACTCCATTGGCATCGCATAGGGTTGGCCCGGTAGAGAATAGAGATGGGATCCATTGACTTWCTTGAAGACCTGAGGGTCTCTGTAGAGATTTGAAATTTTGGAGAAAATAACCTTTGCCAATACTAACCTCAAAATAGTACTTGTAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4799</snp_id>
        <super_contig>c002601468.Contig2</super_contig>
        <contig_pos>22456</contig_pos>
        <strand>+</strand>
        <context>AGTAGAACTT[A/G]TTGTGACCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATACTAACCTCAAAATAGTACTTGTAGCAGAAAAAACCAGTAGAACTT</left_flank>
        <right_flank>TTGTGACCAACAGAAAGATGATTTTGAGGGGTGTTGTAGAAGATTCGGTA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTCAACTGATGATAAAAAATGTCGTGTATGAAAGTTTCAGAAATCAAAAAAATCGCCGTCGTTCCGTAGCAAATAATTTTGAAGCTCATTGTAAATGAGCTCCGTTCAAATCGAATTTTCTGAATCAAATAGTAGCAAAAATAGATGCCAACTTGTCCTTTTGCCCAGTCGAACGACGAATAGATTACGGTATTTTTAGGGTTTAGCAGAGCAGTGACAGGGCTGGAAATCTCTTTTTCAAGCTAACAAGGTCTTCAAAAACTCACATATAAACCGAAAACCCCATTGCTAGAACCATGTAACAAATTTTGGATTTCAAAGGCCTGTACACTCCATTGGCATCGCATAGGGTTGGCCCGGTAGAGAATAGAGATGGGATCCATTGACTTACTTGAAGACCTGAGGGTCTCTGTAGAGATTTGAAATTTTGGAGAAAATAACCTTTGCCAATACTAACCTCAAAATAGTACTTGTAGCAGAAAAAACCAGTAGAACTTATTGTGACCAACAGAAAGATGATTTTGAGGGGTGTTGTAGAAGATTCGGTAGATTCGAAGATCTGAAAATTTGGGAAATTGTTGAATTGCATTTTGTTTTGTAGGACTATTTGAAAGCTACATTTCAATTTTTAGATTTAAAAAAAAATCTTTAGTTTGAAAGAAATTATGGGCTAACGCCTGTGGTGACCCATATCGTCCGGGTTTCTATCGTACCGTCCAGTTTCAACGGCTTCGTCACCTAACCCTCCCAGCTTTAACGGCTCGCCTTCAAAGAGATAAGATTTCCAAATTTATTATAGTTTTCATAGATTTGTAGAACTTTTAAAGATCTATAAACTCCTTTTTGGATTTTTCAAAAAATGTTAAATTTGAACGAAGTTATAAGTTAACGCCTGGGGTGACCCATGCCTGCGCGATGGCAACATCATTCTATCGTCCCGCTAAGTTTCAACGACTCCCCTTCAAAGGGTGATGTTTCCCAGCTAAATAAGTTTCATA</canonical>
            <polymorphic>TCCTCAACTGATGATAAAAAATGTCGTGTATGAAAGTTTCAGAAATCAAAAAAATCGCCGTCGTTCCGTAGCAAATAATTTTGAAGCTCATTGTAAATGAGCTCCGTTCAAATCGAATTTTCTGAATCAAATAGTAGCAAAAATAGATGCCAACTTGTCCTTTTGCCCAGTCGAACGACGAATAGATTACGGTATTTTTAGGGTTTAGCAGAGCAGTGACAGGGCTGGAAATCTCTTTTTCAAGCTAACAAGGTCTTCAAAAACTCACATATAAACCGAAAACCCCATTGCTAGAACCATGTAACAAATTTTGGATTTCAAAGGCCTGTACACTCCATTGGCATCGCATAGGGTTGGCCCGGTAGAGAATAGAGATGGGATCCATTGACTTACTTGAAGACCTGAGGGTCTCTGTAGAGATTTGAAATTTTGGAGAAAATAACCTTTGCCAATACTAACCTCAAAATAGTACTTGTAGCAGAAAAAACCAGTAGAACTTRTTGTGACCAACAGAAAGATGATTTTGAGGGGTGTTGTAGAAGATTCGGTAGATTCGAAGATCTGAAAATTTGGGAAATTGTTGAATTGCATTTTGTTTTGTAGGACTATTTGAAAGCTACATTTCAATTTTTAGATTTAAAAAAAAATCTTTAGTTTGAAAGAAATTATGGGCTAACGCCTGTGGTGACCCATATCGTCCGGGTTTCTATCGTACCGTCCAGTTTCAACGGCTTCGTCACCTAACCCTCCCAGCTTTAACGGCTCGCCTTCAAAGAGATAAGATTTCCAAATTTATTATAGTTTTCATAGATTTGTAGAACTTTTAAAGATCTATAAACTCCTTTTTGGATTTTTCAAAAAATGTTAAATTTGAACGAAGTTATAAGTTAACGCCTGGGGTGACCCATGCCTGCGCGATGGCAACATCATTCTATCGTCCCGCTAAGTTTCAACGACTCCCCTTCAAAGGGTGATGTTTCCCAGCTAAATAAGTTTCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATTTTGGAGAAAATAACCTT</pcr_primer_p1>
		<pcr_primer_p2>GCCCATAATTTCTTTCAAACTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAATTTTGGAGAAAATAACCTTTGCCAATACTAACCTCAAAATAGTACTTGTAGCAGAAAAAACCAGTAGAACTTATTGTGACCAACAGAAAGATGATTTTGAGGGGTGTTGTAGAAGATTCGGTAGATTCGAAGATCTGAAAATTTGGGAAATTGTTGAATTGCATTTTGTTTTGTAGGACTATTTGAAAGCTACATTTCAATTTTTAGATTTAAAAAAAAATCTTTAGTTTGAAAGAAATTATGGGC</canonical_amplicon>
		<polymorphic_amplicon>GAAATTTTGGAGAAAATAACCTTTGCCAATACTAACCTCAAAATAGTACTTGTAGCAGAAAAAACCAGTAGAACTTRTTGTGACCAACAGAAAGATGATTTTGAGGGGTGTTGTAGAAGATTCGGTAGATTCGAAGATCTGAAAATTTGGGAAATTGTTGAATTGCATTTTGTTTTGTAGGACTATTTGAAAGCTACATTTCAATTTTTAGATTTAAAAAAAAATCTTTAGTTTGAAAGAAATTATGGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4808</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>12723</contig_pos>
        <strand></strand>
        <context>tctacatttc[T/A]cagaaaagtg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CATTCTTTTATGTTTTGGCATAACTTTTCTCGGGTTATTTTCTACATTTC</left_flank>
        <right_flank>CAGAAAAGTGTGACGCTGCTTCAGCACTACGCATTCTTCATGACCAGTAC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGATAACGCCTCCAACATAAAAGAGGCAACTCAGATGGTTTGGGCTTCGACAAGCTCAATTGGGTGTGGAGTGAAGGTTTGTCCAAAGGACCCGTCCCATAACGACATGTTCAAGTATGTTGTGGTGTGCCATTATGAGCAACCGTGAGTGGCTTTTGTAGAAAAATATGAAATTAATAATTTCAGAGGAAACGTGAAGGGCCGTGAGATTTATAAGGAAGGAAAGACCTGCTCTACTTGCTATACTGGATTGACTTGTGAGACTGCAACTGGATTGTGTGTTTAACCTTGTTTCTTTTCACTGTGTTGTAAATTTTGAGTAATAAATCATTCATGAATGCATTTGAGATTTCATGATTCGAAAATACAGGGTACATTTCCCTGCCCAATTCCATGACATACCTTCAAGGGACTCAAGTCTCAAAGTTATGGTGAATCATTTTCCAACCATTCTTTTATGTTTTGGCATAACTTTTCTCGGGTTATTTTCTACATTTCTCAGAAAAGTGTGACGCTGCTTCAGCACTACGCATTCTTCATGACCAGTACTGTATATGTATTCGTCGACGCTGGGCCGACTGTCGCCGGTGATCCGATCTATATAGAATCCATATAGGATGTATGATCTTTCCAAGAAAACAAAAGTCCCCCAACGACACTCTGCCCATTCGCTGATCGCCACCGAACTTGATCAATGTTTTGATCCTCTTCGCCATTTTTTCCTATTTTCAAAGAGCGTCAAAAGTATCCAACATCCGGGATGCATAAAGAATTCATGAGTGTGGTCCAAATGAGCATATTGATTTTCCATTTTCGTTTATGTTTCACCTGTCGTATTTTTGCAGAAAGTGAAACATGTAAAAACCGAAATTATAATTATTCCTTATTCGAGCTGAAAATACATATGTTTTCTGCTCCCTGTTTTGGTGTGTCCTGGGCAAAAATGAACTCTTCACGGCCGACCTTGATCACTTTTTTGATCCTTTCCAAAGAGCTCCT</canonical>
            <polymorphic>ATGATAACGCCTCCAACATAAAAGAGGCAACTCAGATGGTTTGGGCTTCGACAAGCTCAATTGGGTGTGGAGTGAAGGTTTGTCCAAAGGACCCGTCCCATAACGACATGTTCAAGTATGTTGTGGTGTGCCATTATGAGCAACCGTGAGTGGCTTTTGTAGAAAAATATGAAATTAATAATTTCAGAGGAAACGTGAAGGGCCGTGAGATTTATAAGGAAGGAAAGACCTGCTCTACTTGCTATACTGGATTGACTTGTGAGACTGCAACTGGATTGTGTGTTTAACCTTGTTTCTTTTCACTGTGTTGTAAATTTTGAGTAATAAATCATTCATGAATGCATTTGAGATTTCATGATTCGAAAATACAGGGTACATTTCCCTGCCCAATTCCATGACATACCTTCAAGGGACTCAAGTCTCAAAGTTATGGTGAATCATTTTCCAACCATTCTTTTATGTTTTGGCATAACTTTTCTCGGGTTATTTTCTACATTTCWCAGAAAAGTGTGACGCTGCTTCAGCACTACGCATTCTTCATGACCAGTACTGTATATGTATTCGTCGACGCTGGGCCGACTGTCGCCGGTGATCCGATCTATATAGAATCCATATAGGATGTATGATCTTTCCAAGAAAACAAAAGTCCCCCAACGACACTCTGCCCATTCGCTGATCGCCACCGAACTTGATCAATGTTTTGATCCTCTTCGCCATTTTTTCCTATTTTCAAAGAGCGTCAAAAGTATCCAACATCCGGGATGCATAAAGAATTCATGAGTGTGGTCCAAATGAGCATATTGATTTTCCATTTTCGTTTATGTTTCACCTGTCGTATTTTTGCAGAAAGTGAAACATGTAAAAACCGAAATTATAATTATTCCTTATTCGAGCTGAAAATACATATGTTTTCTGCTCCCTGTTTTGGTGTGTCCTGGGCAAAAATGAACTCTTCACGGCCGACCTTGATCACTTTTTTGATCCTTTCCAAAGAGCTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 468 31</canonical_bands>
                <polymorphic_bands>969 31</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>405 316 152 93 34</canonical_bands>
                <polymorphic_bands>409 405 152 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCACTGTGTTGTAAATTTTGAG</pcr_primer_p1>
		<pcr_primer_p2>TACAGTACTGGTCATGAAGAATG</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TTCACTGTGTTGTAAATTTTGAGTAATAAATCATTCATGAATGCATTTGAGATTTCATGATTCGAAAATACAGGGTACATTTCCCTGCCCAATTCCATGACATACCTTCAAGGGACTCAAGTCTCAAAGTTATGGTGAATCATTTTCCAACCATTCTTTTATGTTTTGGCATAACTTTTCTCGGGTTATTTTCTACATTTCTCAGAAAAGTGTGACGCTGCTTCAGCACTACGCATTCTTCATGACCAGTACTGTA</canonical_amplicon>
		<polymorphic_amplicon>TTCACTGTGTTGTAAATTTTGAGTAATAAATCATTCATGAATGCATTTGAGATTTCATGATTCGAAAATACAGGGTACATTTCCCTGCCCAATTCCATGACATACCTTCAAGGGACTCAAGTCTCAAAGTTATGGTGAATCATTTTCCAACCATTCTTTTATGTTTTGGCATAACTTTTCTCGGGTTATTTTCTACATTTCWCAGAAAAGTGTGACGCTGCTTCAGCACTACGCATTCTTCATGACCAGTACTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4809</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>12735</contig_pos>
        <strand></strand>
        <context>agaaaagtgt[G/A]acgctgcttc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTGGCATAACTTTTCTCGGGTTATTTTCTACATTTCTCAGAAAAGTGT</left_flank>
        <right_flank>ACGCTGCTTCAGCACTACGCATTCTTCATGACCAGTACTGTATATGTATT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAACATAAAAGAGGCAACTCAGATGGTTTGGGCTTCGACAAGCTCAATTGGGTGTGGAGTGAAGGTTTGTCCAAAGGACCCGTCCCATAACGACATGTTCAAGTATGTTGTGGTGTGCCATTATGAGCAACCGTGAGTGGCTTTTGTAGAAAAATATGAAATTAATAATTTCAGAGGAAACGTGAAGGGCCGTGAGATTTATAAGGAAGGAAAGACCTGCTCTACTTGCTATACTGGATTGACTTGTGAGACTGCAACTGGATTGTGTGTTTAACCTTGTTTCTTTTCACTGTGTTGTAAATTTTGAGTAATAAATCATTCATGAATGCATTTGAGATTTCATGATTCGAAAATACAGGGTACATTTCCCTGCCCAATTCCATGACATACCTTCAAGGGACTCAAGTCTCAAAGTTATGGTGAATCATTTTCCAACCATTCTTTTATGTTTTGGCATAACTTTTCTCGGGTTATTTTCTACATTTCTCAGAAAAGTGTGACGCTGCTTCAGCACTACGCATTCTTCATGACCAGTACTGTATATGTATTCGTCGACGCTGGGCCGACTGTCGCCGGTGATCCGATCTATATAGAATCCATATAGGATGTATGATCTTTCCAAGAAAACAAAAGTCCCCCAACGACACTCTGCCCATTCGCTGATCGCCACCGAACTTGATCAATGTTTTGATCCTCTTCGCCATTTTTTCCTATTTTCAAAGAGCGTCAAAAGTATCCAACATCCGGGATGCATAAAGAATTCATGAGTGTGGTCCAAATGAGCATATTGATTTTCCATTTTCGTTTATGTTTCACCTGTCGTATTTTTGCAGAAAGTGAAACATGTAAAAACCGAAATTATAATTATTCCTTATTCGAGCTGAAAATACATATGTTTTCTGCTCCCTGTTTTGGTGTGTCCTGGGCAAAAATGAACTCTTCACGGCCGACCTTGATCACTTTTTTGATCCTTTCCAAAGAGCTCCTAACTATTTCCAC</canonical>
            <polymorphic>CCAACATAAAAGAGGCAACTCAGATGGTTTGGGCTTCGACAAGCTCAATTGGGTGTGGAGTGAAGGTTTGTCCAAAGGACCCGTCCCATAACGACATGTTCAAGTATGTTGTGGTGTGCCATTATGAGCAACCGTGAGTGGCTTTTGTAGAAAAATATGAAATTAATAATTTCAGAGGAAACGTGAAGGGCCGTGAGATTTATAAGGAAGGAAAGACCTGCTCTACTTGCTATACTGGATTGACTTGTGAGACTGCAACTGGATTGTGTGTTTAACCTTGTTTCTTTTCACTGTGTTGTAAATTTTGAGTAATAAATCATTCATGAATGCATTTGAGATTTCATGATTCGAAAATACAGGGTACATTTCCCTGCCCAATTCCATGACATACCTTCAAGGGACTCAAGTCTCAAAGTTATGGTGAATCATTTTCCAACCATTCTTTTATGTTTTGGCATAACTTTTCTCGGGTTATTTTCTACATTTCTCAGAAAAGTGTRACGCTGCTTCAGCACTACGCATTCTTCATGACCAGTACTGTATATGTATTCGTCGACGCTGGGCCGACTGTCGCCGGTGATCCGATCTATATAGAATCCATATAGGATGTATGATCTTTCCAAGAAAACAAAAGTCCCCCAACGACACTCTGCCCATTCGCTGATCGCCACCGAACTTGATCAATGTTTTGATCCTCTTCGCCATTTTTTCCTATTTTCAAAGAGCGTCAAAAGTATCCAACATCCGGGATGCATAAAGAATTCATGAGTGTGGTCCAAATGAGCATATTGATTTTCCATTTTCGTTTATGTTTCACCTGTCGTATTTTTGCAGAAAGTGAAACATGTAAAAACCGAAATTATAATTATTCCTTATTCGAGCTGAAAATACATATGTTTTCTGCTCCCTGTTTTGGTGTGTCCTGGGCAAAAATGAACTCTTCACGGCCGACCTTGATCACTTTTTTGATCCTTTCCAAAGAGCTCCTAACTATTTCCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>128 101 78 75 68 65 55 54 51 45 43 39 24 24 23 20 19 18 16 14 10 5 5 4 3 2 2 2 2 2 2 1</canonical_bands>
                <polymorphic_bands>128 101 78 75 68 65 55 54 51 45 43 39 24 24 23 20 19 18 16 16 10 5 5 4 3 2 2 2 2 2 1</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATGAATGCATTTGAGATTT</pcr_primer_p1>
		<pcr_primer_p2>GCGTCGACGAATACATATACA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TCATGAATGCATTTGAGATTTCATGATTCGAAAATACAGGGTACATTTCCCTGCCCAATTCCATGACATACCTTCAAGGGACTCAAGTCTCAAAGTTATGGTGAATCATTTTCCAACCATTCTTTTATGTTTTGGCATAACTTTTCTCGGGTTATTTTCTACATTTCTCAGAAAAGTGTGACGCTGCTTCAGCACTACGCATTCTTCATGACCAGTACTGTATATGTATTCGTCGACGC</canonical_amplicon>
		<polymorphic_amplicon>TCATGAATGCATTTGAGATTTCATGATTCGAAAATACAGGGTACATTTCCCTGCCCAATTCCATGACATACCTTCAAGGGACTCAAGTCTCAAAGTTATGGTGAATCATTTTCCAACCATTCTTTTATGTTTTGGCATAACTTTTCTCGGGTTATTTTCTACATTTCTCAGAAAAGTGTRACGCTGCTTCAGCACTACGCATTCTTCATGACCAGTACTGTATATGTATTCGTCGACGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4810</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>12854</contig_pos>
        <strand>+</strand>
        <context>GTATGATCTT[C/T]CCAAGAAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTCGCCGGTGATCCGATCTATATAGAATCCATATAGGATGTATGATCTT</left_flank>
        <right_flank>CCAAGAAAACAAAAGTCCCCCAACGACACTCTGCCCATTCGCTGATCGCC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTATGAGCAACCGTGAGTGGCTTTTGTAGAAAAATATGAAATTAATAATTTCAGAGGAAACGTGAAGGGCCGTGAGATTTATAAGGAAGGAAAGACCTGCTCTACTTGCTATACTGGATTGACTTGTGAGACTGCAACTGGATTGTGTGTTTAACCTTGTTTCTTTTCACTGTGTTGTAAATTTTGAGTAATAAATCATTCATGAATGCATTTGAGATTTCATGATTCGAAAATACAGGGTACATTTCCCTGCCCAATTCCATGACATACCTTCAAGGGACTCAAGTCTCAAAGTTATGGTGAATCATTTTCCAACCATTCTTTTATGTTTTGGCATAACTTTTCTCGGGTTATTTTCTACATTTCTCAGAAAAGTGTGACGCTGCTTCAGCACTACGCATTCTTCATGACCAGTACTGTATATGTATTCGTCGACGCTGGGCCGACTGTCGCCGGTGATCCGATCTATATAGAATCCATATAGGATGTATGATCTTTCCAAGAAAACAAAAGTCCCCCAACGACACTCTGCCCATTCGCTGATCGCCACCGAACTTGATCAATGTTTTGATCCTCTTCGCCATTTTTTCCTATTTTCAAAGAGCGTCAAAAGTATCCAACATCCGGGATGCATAAAGAATTCATGAGTGTGGTCCAAATGAGCATATTGATTTTCCATTTTCGTTTATGTTTCACCTGTCGTATTTTTGCAGAAAGTGAAACATGTAAAAACCGAAATTATAATTATTCCTTATTCGAGCTGAAAATACATATGTTTTCTGCTCCCTGTTTTGGTGTGTCCTGGGCAAAAATGAACTCTTCACGGCCGACCTTGATCACTTTTTTGATCCTTTCCAAAGAGCTCCTAACTATTTCCACCTGCGTCTTTGCACATCAGTTTCACCTATATGGCTTTGAAAGACTTTATCACACAATTTCAATGAACTTTATGATATAATAAAACTCAAATCTACTTGTTGTAACAATAAGAAAAAAAT</canonical>
            <polymorphic>CATTATGAGCAACCGTGAGTGGCTTTTGTAGAAAAATATGAAATTAATAATTTCAGAGGAAACGTGAAGGGCCGTGAGATTTATAAGGAAGGAAAGACCTGCTCTACTTGCTATACTGGATTGACTTGTGAGACTGCAACTGGATTGTGTGTTTAACCTTGTTTCTTTTCACTGTGTTGTAAATTTTGAGTAATAAATCATTCATGAATGCATTTGAGATTTCATGATTCGAAAATACAGGGTACATTTCCCTGCCCAATTCCATGACATACCTTCAAGGGACTCAAGTCTCAAAGTTATGGTGAATCATTTTCCAACCATTCTTTTATGTTTTGGCATAACTTTTCTCGGGTTATTTTCTACATTTCTCAGAAAAGTGTGACGCTGCTTCAGCACTACGCATTCTTCATGACCAGTACTGTATATGTATTCGTCGACGCTGGGCCGACTGTCGCCGGTGATCCGATCTATATAGAATCCATATAGGATGTATGATCTTYCCAAGAAAACAAAAGTCCCCCAACGACACTCTGCCCATTCGCTGATCGCCACCGAACTTGATCAATGTTTTGATCCTCTTCGCCATTTTTTCCTATTTTCAAAGAGCGTCAAAAGTATCCAACATCCGGGATGCATAAAGAATTCATGAGTGTGGTCCAAATGAGCATATTGATTTTCCATTTTCGTTTATGTTTCACCTGTCGTATTTTTGCAGAAAGTGAAACATGTAAAAACCGAAATTATAATTATTCCTTATTCGAGCTGAAAATACATATGTTTTCTGCTCCCTGTTTTGGTGTGTCCTGGGCAAAAATGAACTCTTCACGGCCGACCTTGATCACTTTTTTGATCCTTTCCAAAGAGCTCCTAACTATTTCCACCTGCGTCTTTGCACATCAGTTTCACCTATATGGCTTTGAAAGACTTTATCACACAATTTCAATGAACTTTATGATATAATAAAACTCAAATCTACTTGTTGTAACAATAAGAAAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCATTTTCCAACCATTCTT</pcr_primer_p1>
		<pcr_primer_p2>CGAAGAGGATCAAAACATTG</pcr_primer_p2>
		<pcr_amplicon_size>278</pcr_amplicon_size>
		<canonical_amplicon>AATCATTTTCCAACCATTCTTTTATGTTTTGGCATAACTTTTCTCGGGTTATTTTCTACATTTCTCAGAAAAGTGTGACGCTGCTTCAGCACTACGCATTCTTCATGACCAGTACTGTATATGTATTCGTCGACGCTGGGCCGACTGTCGCCGGTGATCCGATCTATATAGAATCCATATAGGATGTATGATCTTTCCAAGAAAACAAAAGTCCCCCAACGACACTCTGCCCATTCGCTGATCGCCACCGAACTTGATCAATGTTTTGATCCTCTTCG</canonical_amplicon>
		<polymorphic_amplicon>AATCATTTTCCAACCATTCTTTTATGTTTTGGCATAACTTTTCTCGGGTTATTTTCTACATTTCTCAGAAAAGTGTGACGCTGCTTCAGCACTACGCATTCTTCATGACCAGTACTGTATATGTATTCGTCGACGCTGGGCCGACTGTCGCCGGTGATCCGATCTATATAGAATCCATATAGGATGTATGATCTTYCCAAGAAAACAAAAGTCCCCCAACGACACTCTGCCCATTCGCTGATCGCCACCGAACTTGATCAATGTTTTGATCCTCTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4811</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>12882</contig_pos>
        <strand>+</strand>
        <context>CCCCAACGAC[A/T]CTCWGCCCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCATATAGGATGTATGATCTTTCCAAGAAAACAAAAGTCCCCCAACGAC</left_flank>
        <right_flank>CTCTGCCCATTCGCTGATCGCCACCGAACTTGATCAATGTTTTGATCCTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGAAAAATATGAAATTAATAATTTCAGAGGAAACGTGAAGGGCCGTGAGATTTATAAGGAAGGAAAGACCTGCTCTACTTGCTATACTGGATTGACTTGTGAGACTGCAACTGGATTGTGTGTTTAACCTTGTTTCTTTTCACTGTGTTGTAAATTTTGAGTAATAAATCATTCATGAATGCATTTGAGATTTCATGATTCGAAAATACAGGGTACATTTCCCTGCCCAATTCCATGACATACCTTCAAGGGACTCAAGTCTCAAAGTTATGGTGAATCATTTTCCAACCATTCTTTTATGTTTTGGCATAACTTTTCTCGGGTTATTTTCTACATTTCTCAGAAAAGTGTGACGCTGCTTCAGCACTACGCATTCTTCATGACCAGTACTGTATATGTATTCGTCGACGCTGGGCCGACTGTCGCCGGTGATCCGATCTATATAGAATCCATATAGGATGTATGATCTTTCCAAGAAAACAAAAGTCCCCCAACGACACTCTGCCCATTCGCTGATCGCCACCGAACTTGATCAATGTTTTGATCCTCTTCGCCATTTTTTCCTATTTTCAAAGAGCGTCAAAAGTATCCAACATCCGGGATGCATAAAGAATTCATGAGTGTGGTCCAAATGAGCATATTGATTTTCCATTTTCGTTTATGTTTCACCTGTCGTATTTTTGCAGAAAGTGAAACATGTAAAAACCGAAATTATAATTATTCCTTATTCGAGCTGAAAATACATATGTTTTCTGCTCCCTGTTTTGGTGTGTCCTGGGCAAAAATGAACTCTTCACGGCCGACCTTGATCACTTTTTTGATCCTTTCCAAAGAGCTCCTAACTATTTCCACCTGCGTCTTTGCACATCAGTTTCACCTATATGGCTTTGAAAGACTTTATCACACAATTTCAATGAACTTTATGATATAATAAAACTCAAATCTACTTGTTGTAACAATAAGAAAAAAATCAAATTTATGAAAAGTCAAGATGAGACA</canonical>
            <polymorphic>TAGAAAAATATGAAATTAATAATTTCAGAGGAAACGTGAAGGGCCGTGAGATTTATAAGGAAGGAAAGACCTGCTCTACTTGCTATACTGGATTGACTTGTGAGACTGCAACTGGATTGTGTGTTTAACCTTGTTTCTTTTCACTGTGTTGTAAATTTTGAGTAATAAATCATTCATGAATGCATTTGAGATTTCATGATTCGAAAATACAGGGTACATTTCCCTGCCCAATTCCATGACATACCTTCAAGGGACTCAAGTCTCAAAGTTATGGTGAATCATTTTCCAACCATTCTTTTATGTTTTGGCATAACTTTTCTCGGGTTATTTTCTACATTTCTCAGAAAAGTGTGACGCTGCTTCAGCACTACGCATTCTTCATGACCAGTACTGTATATGTATTCGTCGACGCTGGGCCGACTGTCGCCGGTGATCCGATCTATATAGAATCCATATAGGATGTATGATCTTTCCAAGAAAACAAAAGTCCCCCAACGACWCTCTGCCCATTCGCTGATCGCCACCGAACTTGATCAATGTTTTGATCCTCTTCGCCATTTTTTCCTATTTTCAAAGAGCGTCAAAAGTATCCAACATCCGGGATGCATAAAGAATTCATGAGTGTGGTCCAAATGAGCATATTGATTTTCCATTTTCGTTTATGTTTCACCTGTCGTATTTTTGCAGAAAGTGAAACATGTAAAAACCGAAATTATAATTATTCCTTATTCGAGCTGAAAATACATATGTTTTCTGCTCCCTGTTTTGGTGTGTCCTGGGCAAAAATGAACTCTTCACGGCCGACCTTGATCACTTTTTTGATCCTTTCCAAAGAGCTCCTAACTATTTCCACCTGCGTCTTTGCACATCAGTTTCACCTATATGGCTTTGAAAGACTTTATCACACAATTTCAATGAACTTTATGATATAATAAAACTCAAATCTACTTGTTGTAACAATAAGAAAAAAATCAAATTTATGAAAAGTCAAGATGAGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>128 101 94 78 75 68 65 54 43 39 38 27 24 24 23 20 19 16 14 14 11 10 5 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>128 101 94 91 78 75 65 54 43 39 38 27 24 24 20 19 16 14 14 11 10 5 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCATTTTCCAACCATTCTT</pcr_primer_p1>
		<pcr_primer_p2>CGAAGAGGATCAAAACATTG</pcr_primer_p2>
		<pcr_amplicon_size>278</pcr_amplicon_size>
		<canonical_amplicon>AATCATTTTCCAACCATTCTTTTATGTTTTGGCATAACTTTTCTCGGGTTATTTTCTACATTTCTCAGAAAAGTGTGACGCTGCTTCAGCACTACGCATTCTTCATGACCAGTACTGTATATGTATTCGTCGACGCTGGGCCGACTGTCGCCGGTGATCCGATCTATATAGAATCCATATAGGATGTATGATCTTTCCAAGAAAACAAAAGTCCCCCAACGACACTCTGCCCATTCGCTGATCGCCACCGAACTTGATCAATGTTTTGATCCTCTTCG</canonical_amplicon>
		<polymorphic_amplicon>AATCATTTTCCAACCATTCTTTTATGTTTTGGCATAACTTTTCTCGGGTTATTTTCTACATTTCTCAGAAAAGTGTGACGCTGCTTCAGCACTACGCATTCTTCATGACCAGTACTGTATATGTATTCGTCGACGCTGGGCCGACTGTCGCCGGTGATCCGATCTATATAGAATCCATATAGGATGTATGATCTTTCCAAGAAAACAAAAGTCCCCCAACGACWCTCTGCCCATTCGCTGATCGCCACCGAACTTGATCAATGTTTTGATCCTCTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4812</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>12886</contig_pos>
        <strand>+</strand>
        <context>AACGACWCTC[A/T]GCCCATTCGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATAGGATGTATGATCTTTCCAAGAAAACAAAAGTCCCCCAACGACACTC</left_flank>
        <right_flank>GCCCATTCGCTGATCGCCACCGAACTTGATCAATGTTTTGATCCTCTTCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATATGAAATTAATAATTTCAGAGGAAACGTGAAGGGCCGTGAGATTTATAAGGAAGGAAAGACCTGCTCTACTTGCTATACTGGATTGACTTGTGAGACTGCAACTGGATTGTGTGTTTAACCTTGTTTCTTTTCACTGTGTTGTAAATTTTGAGTAATAAATCATTCATGAATGCATTTGAGATTTCATGATTCGAAAATACAGGGTACATTTCCCTGCCCAATTCCATGACATACCTTCAAGGGACTCAAGTCTCAAAGTTATGGTGAATCATTTTCCAACCATTCTTTTATGTTTTGGCATAACTTTTCTCGGGTTATTTTCTACATTTCTCAGAAAAGTGTGACGCTGCTTCAGCACTACGCATTCTTCATGACCAGTACTGTATATGTATTCGTCGACGCTGGGCCGACTGTCGCCGGTGATCCGATCTATATAGAATCCATATAGGATGTATGATCTTTCCAAGAAAACAAAAGTCCCCCAACGACACTCTGCCCATTCGCTGATCGCCACCGAACTTGATCAATGTTTTGATCCTCTTCGCCATTTTTTCCTATTTTCAAAGAGCGTCAAAAGTATCCAACATCCGGGATGCATAAAGAATTCATGAGTGTGGTCCAAATGAGCATATTGATTTTCCATTTTCGTTTATGTTTCACCTGTCGTATTTTTGCAGAAAGTGAAACATGTAAAAACCGAAATTATAATTATTCCTTATTCGAGCTGAAAATACATATGTTTTCTGCTCCCTGTTTTGGTGTGTCCTGGGCAAAAATGAACTCTTCACGGCCGACCTTGATCACTTTTTTGATCCTTTCCAAAGAGCTCCTAACTATTTCCACCTGCGTCTTTGCACATCAGTTTCACCTATATGGCTTTGAAAGACTTTATCACACAATTTCAATGAACTTTATGATATAATAAAACTCAAATCTACTTGTTGTAACAATAAGAAAAAAATCAAATTTATGAAAAGTCAAGATGAGACAGCTC</canonical>
            <polymorphic>AAAATATGAAATTAATAATTTCAGAGGAAACGTGAAGGGCCGTGAGATTTATAAGGAAGGAAAGACCTGCTCTACTTGCTATACTGGATTGACTTGTGAGACTGCAACTGGATTGTGTGTTTAACCTTGTTTCTTTTCACTGTGTTGTAAATTTTGAGTAATAAATCATTCATGAATGCATTTGAGATTTCATGATTCGAAAATACAGGGTACATTTCCCTGCCCAATTCCATGACATACCTTCAAGGGACTCAAGTCTCAAAGTTATGGTGAATCATTTTCCAACCATTCTTTTATGTTTTGGCATAACTTTTCTCGGGTTATTTTCTACATTTCTCAGAAAAGTGTGACGCTGCTTCAGCACTACGCATTCTTCATGACCAGTACTGTATATGTATTCGTCGACGCTGGGCCGACTGTCGCCGGTGATCCGATCTATATAGAATCCATATAGGATGTATGATCTTTCCAAGAAAACAAAAGTCCCCCAACGACACTCWGCCCATTCGCTGATCGCCACCGAACTTGATCAATGTTTTGATCCTCTTCGCCATTTTTTCCTATTTTCAAAGAGCGTCAAAAGTATCCAACATCCGGGATGCATAAAGAATTCATGAGTGTGGTCCAAATGAGCATATTGATTTTCCATTTTCGTTTATGTTTCACCTGTCGTATTTTTGCAGAAAGTGAAACATGTAAAAACCGAAATTATAATTATTCCTTATTCGAGCTGAAAATACATATGTTTTCTGCTCCCTGTTTTGGTGTGTCCTGGGCAAAAATGAACTCTTCACGGCCGACCTTGATCACTTTTTTGATCCTTTCCAAAGAGCTCCTAACTATTTCCACCTGCGTCTTTGCACATCAGTTTCACCTATATGGCTTTGAAAGACTTTATCACACAATTTCAATGAACTTTATGATATAATAAAACTCAAATCTACTTGTTGTAACAATAAGAAAAAAATCAAATTTATGAAAAGTCAAGATGAGACAGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTTCCAACCATTCTTTTA</pcr_primer_p1>
		<pcr_primer_p2>GACGCTCTTTGAAAATAGGA</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>CATTTTCCAACCATTCTTTTATGTTTTGGCATAACTTTTCTCGGGTTATTTTCTACATTTCTCAGAAAAGTGTGACGCTGCTTCAGCACTACGCATTCTTCATGACCAGTACTGTATATGTATTCGTCGACGCTGGGCCGACTGTCGCCGGTGATCCGATCTATATAGAATCCATATAGGATGTATGATCTTTCCAAGAAAACAAAAGTCCCCCAACGACACTCTGCCCATTCGCTGATCGCCACCGAACTTGATCAATGTTTTGATCCTCTTCGCCATTTTTTCCTATTTTCAAAGAGCGTC</canonical_amplicon>
		<polymorphic_amplicon>CATTTTCCAACCATTCTTTTATGTTTTGGCATAACTTTTCTCGGGTTATTTTCTACATTTCTCAGAAAAGTGTGACGCTGCTTCAGCACTACGCATTCTTCATGACCAGTACTGTATATGTATTCGTCGACGCTGGGCCGACTGTCGCCGGTGATCCGATCTATATAGAATCCATATAGGATGTATGATCTTTCCAAGAAAACAAAAGTCCCCCAACGACACTCWGCCCATTCGCTGATCGCCACCGAACTTGATCAATGTTTTGATCCTCTTCGCCATTTTTTCCTATTTTCAAAGAGCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4813</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>13011</contig_pos>
        <strand>+</strand>
        <context>TGAGTGTGGT[C/T]CAAATGAGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTCAAAAGTATCCAACATCCGGGATGCATAAAGAATTCATGAGTGTGGT</left_flank>
        <right_flank>CAAATGAGCATATTGATTTTCCATTTTCGTTTATGTTTCACCTGTCGTAT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTGTTTCTTTTCACTGTGTTGTAAATTTTGAGTAATAAATCATTCATGAATGCATTTGAGATTTCATGATTCGAAAATACAGGGTACATTTCCCTGCCCAATTCCATGACATACCTTCAAGGGACTCAAGTCTCAAAGTTATGGTGAATCATTTTCCAACCATTCTTTTATGTTTTGGCATAACTTTTCTCGGGTTATTTTCTACATTTCTCAGAAAAGTGTGACGCTGCTTCAGCACTACGCATTCTTCATGACCAGTACTGTATATGTATTCGTCGACGCTGGGCCGACTGTCGCCGGTGATCCGATCTATATAGAATCCATATAGGATGTATGATCTTTCCAAGAAAACAAAAGTCCCCCAACGACACTCTGCCCATTCGCTGATCGCCACCGAACTTGATCAATGTTTTGATCCTCTTCGCCATTTTTTCCTATTTTCAAAGAGCGTCAAAAGTATCCAACATCCGGGATGCATAAAGAATTCATGAGTGTGGTCCAAATGAGCATATTGATTTTCCATTTTCGTTTATGTTTCACCTGTCGTATTTTTGCAGAAAGTGAAACATGTAAAAACCGAAATTATAATTATTCCTTATTCGAGCTGAAAATACATATGTTTTCTGCTCCCTGTTTTGGTGTGTCCTGGGCAAAAATGAACTCTTCACGGCCGACCTTGATCACTTTTTTGATCCTTTCCAAAGAGCTCCTAACTATTTCCACCTGCGTCTTTGCACATCAGTTTCACCTATATGGCTTTGAAAGACTTTATCACACAATTTCAATGAACTTTATGATATAATAAAACTCAAATCTACTTGTTGTAACAATAAGAAAAAAATCAAATTTATGAAAAGTCAAGATGAGACAGCTCCAACAGAAACATCTCGACGATAACGCAAGAAGCGCCTGAAAGAGCTTTCTCCAAATCGGACGGTCACGTTCTCTTCGAAAAAAATGAGCAATGCATCTCGATAAGGACGATGAACTAAGATCATA</canonical>
            <polymorphic>CTTGTTTCTTTTCACTGTGTTGTAAATTTTGAGTAATAAATCATTCATGAATGCATTTGAGATTTCATGATTCGAAAATACAGGGTACATTTCCCTGCCCAATTCCATGACATACCTTCAAGGGACTCAAGTCTCAAAGTTATGGTGAATCATTTTCCAACCATTCTTTTATGTTTTGGCATAACTTTTCTCGGGTTATTTTCTACATTTCTCAGAAAAGTGTGACGCTGCTTCAGCACTACGCATTCTTCATGACCAGTACTGTATATGTATTCGTCGACGCTGGGCCGACTGTCGCCGGTGATCCGATCTATATAGAATCCATATAGGATGTATGATCTTTCCAAGAAAACAAAAGTCCCCCAACGACACTCTGCCCATTCGCTGATCGCCACCGAACTTGATCAATGTTTTGATCCTCTTCGCCATTTTTTCCTATTTTCAAAGAGCGTCAAAAGTATCCAACATCCGGGATGCATAAAGAATTCATGAGTGTGGTYCAAATGAGCATATTGATTTTCCATTTTCGTTTATGTTTCACCTGTCGTATTTTTGCAGAAAGTGAAACATGTAAAAACCGAAATTATAATTATTCCTTATTCGAGCTGAAAATACATATGTTTTCTGCTCCCTGTTTTGGTGTGTCCTGGGCAAAAATGAACTCTTCACGGCCGACCTTGATCACTTTTTTGATCCTTTCCAAAGAGCTCCTAACTATTTCCACCTGCGTCTTTGCACATCAGTTTCACCTATATGGCTTTGAAAGACTTTATCACACAATTTCAATGAACTTTATGATATAATAAAACTCAAATCTACTTGTTGTAACAATAAGAAAAAAATCAAATTTATGAAAAGTCAAGATGAGACAGCTCCAACAGAAACATCTCGACGATAACGCAAGAAGCGCCTGAAAGAGCTTTCTCCAAATCGGACGGTCACGTTCTCTTCGAAAAAAATGAGCAATGCATCTCGATAAGGACGATGAACTAAGATCATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>503 285 212</canonical_bands>
                <polymorphic_bands>715 285</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAAGAGCGTCAAAAGTAT</pcr_primer_p1>
		<pcr_primer_p2>CCGTGAAGAGTTCATTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAAGAGCGTCAAAAGTATCCAACATCCGGGATGCATAAAGAATTCATGAGTGTGGTCCAAATGAGCATATTGATTTTCCATTTTCGTTTATGTTTCACCTGTCGTATTTTTGCAGAAAGTGAAACATGTAAAAACCGAAATTATAATTATTCCTTATTCGAGCTGAAAATACATATGTTTTCTGCTCCCTGTTTTGGTGTGTCCTGGGCAAAAATGAACTCTTCACGG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAAGAGCGTCAAAAGTATCCAACATCCGGGATGCATAAAGAATTCATGAGTGTGGTYCAAATGAGCATATTGATTTTCCATTTTCGTTTATGTTTCACCTGTCGTATTTTTGCAGAAAGTGAAACATGTAAAAACCGAAATTATAATTATTCCTTATTCGAGCTGAAAATACATATGTTTTCTGCTCCCTGTTTTGGTGTGTCCTGGGCAAAAATGAACTCTTCACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4814</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>13025</contig_pos>
        <strand>+</strand>
        <context>ATGAGCATAT[C/T]GATTTTCSAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACATCCGGGATGCATAAAGAATTCATGAGTGTGGTCCAAATGAGCATAT</left_flank>
        <right_flank>GATTTTCCATTTTCGTTTATGTTTCACCTGTCGTATTTTTGCAGAAAGTG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTGTTGTAAATTTTGAGTAATAAATCATTCATGAATGCATTTGAGATTTCATGATTCGAAAATACAGGGTACATTTCCCTGCCCAATTCCATGACATACCTTCAAGGGACTCAAGTCTCAAAGTTATGGTGAATCATTTTCCAACCATTCTTTTATGTTTTGGCATAACTTTTCTCGGGTTATTTTCTACATTTCTCAGAAAAGTGTGACGCTGCTTCAGCACTACGCATTCTTCATGACCAGTACTGTATATGTATTCGTCGACGCTGGGCCGACTGTCGCCGGTGATCCGATCTATATAGAATCCATATAGGATGTATGATCTTTCCAAGAAAACAAAAGTCCCCCAACGACACTCTGCCCATTCGCTGATCGCCACCGAACTTGATCAATGTTTTGATCCTCTTCGCCATTTTTTCCTATTTTCAAAGAGCGTCAAAAGTATCCAACATCCGGGATGCATAAAGAATTCATGAGTGTGGTCCAAATGAGCATATTGATTTTCCATTTTCGTTTATGTTTCACCTGTCGTATTTTTGCAGAAAGTGAAACATGTAAAAACCGAAATTATAATTATTCCTTATTCGAGCTGAAAATACATATGTTTTCTGCTCCCTGTTTTGGTGTGTCCTGGGCAAAAATGAACTCTTCACGGCCGACCTTGATCACTTTTTTGATCCTTTCCAAAGAGCTCCTAACTATTTCCACCTGCGTCTTTGCACATCAGTTTCACCTATATGGCTTTGAAAGACTTTATCACACAATTTCAATGAACTTTATGATATAATAAAACTCAAATCTACTTGTTGTAACAATAAGAAAAAAATCAAATTTATGAAAAGTCAAGATGAGACAGCTCCAACAGAAACATCTCGACGATAACGCAAGAAGCGCCTGAAAGAGCTTTCTCCAAATCGGACGGTCACGTTCTCTTCGAAAAAAATGAGCAATGCATCTCGATAAGGACGATGAACTAAGATCATAGTTAATGAAGACGA</canonical>
            <polymorphic>CTGTGTTGTAAATTTTGAGTAATAAATCATTCATGAATGCATTTGAGATTTCATGATTCGAAAATACAGGGTACATTTCCCTGCCCAATTCCATGACATACCTTCAAGGGACTCAAGTCTCAAAGTTATGGTGAATCATTTTCCAACCATTCTTTTATGTTTTGGCATAACTTTTCTCGGGTTATTTTCTACATTTCTCAGAAAAGTGTGACGCTGCTTCAGCACTACGCATTCTTCATGACCAGTACTGTATATGTATTCGTCGACGCTGGGCCGACTGTCGCCGGTGATCCGATCTATATAGAATCCATATAGGATGTATGATCTTTCCAAGAAAACAAAAGTCCCCCAACGACACTCTGCCCATTCGCTGATCGCCACCGAACTTGATCAATGTTTTGATCCTCTTCGCCATTTTTTCCTATTTTCAAAGAGCGTCAAAAGTATCCAACATCCGGGATGCATAAAGAATTCATGAGTGTGGTCCAAATGAGCATATYGATTTTCCATTTTCGTTTATGTTTCACCTGTCGTATTTTTGCAGAAAGTGAAACATGTAAAAACCGAAATTATAATTATTCCTTATTCGAGCTGAAAATACATATGTTTTCTGCTCCCTGTTTTGGTGTGTCCTGGGCAAAAATGAACTCTTCACGGCCGACCTTGATCACTTTTTTGATCCTTTCCAAAGAGCTCCTAACTATTTCCACCTGCGTCTTTGCACATCAGTTTCACCTATATGGCTTTGAAAGACTTTATCACACAATTTCAATGAACTTTATGATATAATAAAACTCAAATCTACTTGTTGTAACAATAAGAAAAAAATCAAATTTATGAAAAGTCAAGATGAGACAGCTCCAACAGAAACATCTCGACGATAACGCAAGAAGCGCCTGAAAGAGCTTTCTCCAAATCGGACGGTCACGTTCTCTTCGAAAAAAATGAGCAATGCATCTCGATAAGGACGATGAACTAAGATCATAGTTAATGAAGACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAAGAGCGTCAAAAGTAT</pcr_primer_p1>
		<pcr_primer_p2>CCGTGAAGAGTTCATTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAAGAGCGTCAAAAGTATCCAACATCCGGGATGCATAAAGAATTCATGAGTGTGGTCCAAATGAGCATATTGATTTTCCATTTTCGTTTATGTTTCACCTGTCGTATTTTTGCAGAAAGTGAAACATGTAAAAACCGAAATTATAATTATTCCTTATTCGAGCTGAAAATACATATGTTTTCTGCTCCCTGTTTTGGTGTGTCCTGGGCAAAAATGAACTCTTCACGG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAAGAGCGTCAAAAGTATCCAACATCCGGGATGCATAAAGAATTCATGAGTGTGGTCCAAATGAGCATATYGATTTTCCATTTTCGTTTATGTTTCACCTGTCGTATTTTTGCAGAAAGTGAAACATGTAAAAACCGAAATTATAATTATTCCTTATTCGAGCTGAAAATACATATGTTTTCTGCTCCCTGTTTTGGTGTGTCCTGGGCAAAAATGAACTCTTCACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4815</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>13033</contig_pos>
        <strand>+</strand>
        <context>ATYGATTTTC[C/G]ATTTTCGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGATGCATAAAGAATTCATGAGTGTGGTCCAAATGAGCATATTGATTTTC</left_flank>
        <right_flank>ATTTTCGTTTATGTTTCACCTGTCGTATTTTTGCAGAAAGTGAAACATGT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATTTTGAGTAATAAATCATTCATGAATGCATTTGAGATTTCATGATTCGAAAATACAGGGTACATTTCCCTGCCCAATTCCATGACATACCTTCAAGGGACTCAAGTCTCAAAGTTATGGTGAATCATTTTCCAACCATTCTTTTATGTTTTGGCATAACTTTTCTCGGGTTATTTTCTACATTTCTCAGAAAAGTGTGACGCTGCTTCAGCACTACGCATTCTTCATGACCAGTACTGTATATGTATTCGTCGACGCTGGGCCGACTGTCGCCGGTGATCCGATCTATATAGAATCCATATAGGATGTATGATCTTTCCAAGAAAACAAAAGTCCCCCAACGACACTCTGCCCATTCGCTGATCGCCACCGAACTTGATCAATGTTTTGATCCTCTTCGCCATTTTTTCCTATTTTCAAAGAGCGTCAAAAGTATCCAACATCCGGGATGCATAAAGAATTCATGAGTGTGGTCCAAATGAGCATATTGATTTTCCATTTTCGTTTATGTTTCACCTGTCGTATTTTTGCAGAAAGTGAAACATGTAAAAACCGAAATTATAATTATTCCTTATTCGAGCTGAAAATACATATGTTTTCTGCTCCCTGTTTTGGTGTGTCCTGGGCAAAAATGAACTCTTCACGGCCGACCTTGATCACTTTTTTGATCCTTTCCAAAGAGCTCCTAACTATTTCCACCTGCGTCTTTGCACATCAGTTTCACCTATATGGCTTTGAAAGACTTTATCACACAATTTCAATGAACTTTATGATATAATAAAACTCAAATCTACTTGTTGTAACAATAAGAAAAAAATCAAATTTATGAAAAGTCAAGATGAGACAGCTCCAACAGAAACATCTCGACGATAACGCAAGAAGCGCCTGAAAGAGCTTTCTCCAAATCGGACGGTCACGTTCTCTTCGAAAAAAATGAGCAATGCATCTCGATAAGGACGATGAACTAAGATCATAGTTAATGAAGACGAAAATCCAT</canonical>
            <polymorphic>TAAATTTTGAGTAATAAATCATTCATGAATGCATTTGAGATTTCATGATTCGAAAATACAGGGTACATTTCCCTGCCCAATTCCATGACATACCTTCAAGGGACTCAAGTCTCAAAGTTATGGTGAATCATTTTCCAACCATTCTTTTATGTTTTGGCATAACTTTTCTCGGGTTATTTTCTACATTTCTCAGAAAAGTGTGACGCTGCTTCAGCACTACGCATTCTTCATGACCAGTACTGTATATGTATTCGTCGACGCTGGGCCGACTGTCGCCGGTGATCCGATCTATATAGAATCCATATAGGATGTATGATCTTTCCAAGAAAACAAAAGTCCCCCAACGACACTCTGCCCATTCGCTGATCGCCACCGAACTTGATCAATGTTTTGATCCTCTTCGCCATTTTTTCCTATTTTCAAAGAGCGTCAAAAGTATCCAACATCCGGGATGCATAAAGAATTCATGAGTGTGGTCCAAATGAGCATATTGATTTTCSATTTTCGTTTATGTTTCACCTGTCGTATTTTTGCAGAAAGTGAAACATGTAAAAACCGAAATTATAATTATTCCTTATTCGAGCTGAAAATACATATGTTTTCTGCTCCCTGTTTTGGTGTGTCCTGGGCAAAAATGAACTCTTCACGGCCGACCTTGATCACTTTTTTGATCCTTTCCAAAGAGCTCCTAACTATTTCCACCTGCGTCTTTGCACATCAGTTTCACCTATATGGCTTTGAAAGACTTTATCACACAATTTCAATGAACTTTATGATATAATAAAACTCAAATCTACTTGTTGTAACAATAAGAAAAAAATCAAATTTATGAAAAGTCAAGATGAGACAGCTCCAACAGAAACATCTCGACGATAACGCAAGAAGCGCCTGAAAGAGCTTTCTCCAAATCGGACGGTCACGTTCTCTTCGAAAAAAATGAGCAATGCATCTCGATAAGGACGATGAACTAAGATCATAGTTAATGAAGACGAAAATCCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAAGAGCGTCAAAAGTAT</pcr_primer_p1>
		<pcr_primer_p2>CCGTGAAGAGTTCATTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAAGAGCGTCAAAAGTATCCAACATCCGGGATGCATAAAGAATTCATGAGTGTGGTCCAAATGAGCATATTGATTTTCCATTTTCGTTTATGTTTCACCTGTCGTATTTTTGCAGAAAGTGAAACATGTAAAAACCGAAATTATAATTATTCCTTATTCGAGCTGAAAATACATATGTTTTCTGCTCCCTGTTTTGGTGTGTCCTGGGCAAAAATGAACTCTTCACGG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAAGAGCGTCAAAAGTATCCAACATCCGGGATGCATAAAGAATTCATGAGTGTGGTCCAAATGAGCATATTGATTTTCSATTTTCGTTTATGTTTCACCTGTCGTATTTTTGCAGAAAGTGAAACATGTAAAAACCGAAATTATAATTATTCCTTATTCGAGCTGAAAATACATATGTTTTCTGCTCCCTGTTTTGGTGTGTCCTGGGCAAAAATGAACTCTTCACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4816</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>17108</contig_pos>
        <strand>+</strand>
        <context>AAAAATAGAG[C/T]TCCATAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATAGTTGGTTCATAACTGCCTTTAAGAATTCGTTATTACAAAAATAGAG</left_flank>
        <right_flank>TCCATAAAAAATTATTCCAAAACCGCCTTCATCATGTCGTCAAAAACTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACTACTATGTGAGTTTCGAATGATTTGAAATTTTATAACTGTGTGATTTTTTCAGGGAGCAAGAGCCTCACAGTTGTGGGAAGAGGAGTTCCAACAATATGGATGGGATTCCACTACGATGGATGACAACGCCTCCAACATCAAAGACGCTACTCAAATGGCTTGGGCTGAGACTGGTTTGATTGGATGCGGGTTAAAGTATGTGGAAAGGACAAGTCTGGGGCAAGCCAGTTCAAGTATGTTGTGGTGTGCCATTATAAGAAACCGTAAGTAACTCTTGTTTTAAAATAGTAATGTATAATTTCAGAGGAAACAAAATCGGTGCTGAGATTTATCAGCCAGGAGACACCTGCACTGCTTGCTCGGCTGGCCTGACTTGTGAGACTGCTTCTGGATTGTGTGCTTAAACTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATAGTTGGTTCATAACTGCCTTTAAGAATTCGTTATTACAAAAATAGAGTTCCATAAAAAATTATTCCAAAACCGCCTTCATCATGTCGTCAAAAACTTTTTGACGTTTGGGTTGAAATGTTCCAAAAGTTTGAATCAAAACGTTATCTCAATGGCTCTTCTGAACTCAAGCTAAATCAAGCTGTGTGTTGATCCGAATTAGAGCAGATGAACAAACCCACGCGGTTTTTTTCTGAATTCAAACGAATATAAAACTGGGAAGGATACATGAAAAAAAATCAAAAGGGCATATAAAAAAGTAAAGTATCTTGAAACAACTGTCACTCCTTTTTATACCATTTTTTATCGCCCAACTTTCCGTGAATTCCTCAAACGACCCGGTTCCAAAATCATGGACTTTTTTTTTGGCACGTAAAAAGTCCGGTGATGTGAACGAATTCCAAGTAACGACAGCTTCAGAGTAGACTTTTTGTCTTCAGTTCTTGCAAAAAATGAGGTACCAAGAATAGAAAGTTCTCGGCCTACACCGCTGTGTCTGCTGAGTCATCAT</canonical>
            <polymorphic>TGACTACTATGTGAGTTTCGAATGATTTGAAATTTTATAACTGTGTGATTTTTTCAGGGAGCAAGAGCCTCACAGTTGTGGGAAGAGGAGTTCCAACAATATGGATGGGATTCCACTACGATGGATGACAACGCCTCCAACATCAAAGACGCTACTCAAATGGCTTGGGCTGAGACTGGTTTGATTGGATGCGGGTTAAAGTATGTGGAAAGGACAAGTCTGGGGCAAGCCAGTTCAAGTATGTTGTGGTGTGCCATTATAAGAAACCGTAAGTAACTCTTGTTTTAAAATAGTAATGTATAATTTCAGAGGAAACAAAATCGGTGCTGAGATTTATCAGCCAGGAGACACCTGCACTGCTTGCTCGGCTGGCCTGACTTGTGAGACTGCTTCTGGATTGTGTGCTTAAACTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATAGTTGGTTCATAACTGCCTTTAAGAATTCGTTATTACAAAAATAGAGYTCCATAAAAAATTATTCCAAAACCGCCTTCATCATGTCGTCAAAAACTTTTTGACGTTTGGGTTGAAATGTTCCAAAAGTTTGAATCAAAACGTTATCTCAATGGCTCTTCTGAACTCAAGCTAAATCAAGCTGTGTGTTGATCCGAATTAGAGCAGATGAACAAACCCACGCGGTTTTTTTCTGAATTCAAACGAATATAAAACTGGGAAGGATACATGAAAAAAAATCAAAAGGGCATATAAAAAAGTAAAGTATCTTGAAACAACTGTCACTCCTTTTTATACCATTTTTTATCGCCCAACTTTCCGTGAATTCCTCAAACGACCCGGTTCCAAAATCATGGACTTTTTTTTTGGCACGTAAAAAGTCCGGTGATGTGAACGAATTCCAAGTAACGACAGCTTCAGAGTAGACTTTTTGTCTTCAGTTCTTGCAAAAAATGAGGTACCAAGAATAGAAAGTTCTCGGCCTACACCGCTGTGTCTGCTGAGTCATCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTGGATTGTGTGCTTAAA</pcr_primer_p1>
		<pcr_primer_p2>ACAGCTTGATTTAGCTTGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTTCTGGATTGTGTGCTTAAACTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATAGTTGGTTCATAACTGCCTTTAAGAATTCGTTATTACAAAAATAGAGTTCCATAAAAAATTATTCCAAAACCGCCTTCATCATGTCGTCAAAAACTTTTTGACGTTTGGGTTGAAATGTTCCAAAAGTTTGAATCAAAACGTTATCTCAATGGCTCTTCTGAACTCAAGCTAAATCAAGCTGT</canonical_amplicon>
		<polymorphic_amplicon>CTTCTGGATTGTGTGCTTAAACTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATAGTTGGTTCATAACTGCCTTTAAGAATTCGTTATTACAAAAATAGAGYTCCATAAAAAATTATTCCAAAACCGCCTTCATCATGTCGTCAAAAACTTTTTGACGTTTGGGTTGAAATGTTCCAAAAGTTTGAATCAAAACGTTATCTCAATGGCTCTTCTGAACTCAAGCTAAATCAAGCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4817</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>17093</contig_pos>
        <strand>+</strand>
        <context>AGAATTCGTY[A/G]TTACAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTAAAGTAATATAAATAGTTGGTTCATAACTGCCTTTAAGAATTCGTT</left_flank>
        <right_flank>TTACAAAAATAGAGTTCCATAAAAAATTATTCCAAAACCGCCTTCATCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACAAAAACAGTCTTGACTACTATGTGAGTTTCGAATGATTTGAAATTTTATAACTGTGTGATTTTTTCAGGGAGCAAGAGCCTCACAGTTGTGGGAAGAGGAGTTCCAACAATATGGATGGGATTCCACTACGATGGATGACAACGCCTCCAACATCAAAGACGCTACTCAAATGGCTTGGGCTGAGACTGGTTTGATTGGATGCGGGTTAAAGTATGTGGAAAGGACAAGTCTGGGGCAAGCCAGTTCAAGTATGTTGTGGTGTGCCATTATAAGAAACCGTAAGTAACTCTTGTTTTAAAATAGTAATGTATAATTTCAGAGGAAACAAAATCGGTGCTGAGATTTATCAGCCAGGAGACACCTGCACTGCTTGCTCGGCTGGCCTGACTTGTGAGACTGCTTCTGGATTGTGTGCTTAAACTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATAGTTGGTTCATAACTGCCTTTAAGAATTCGTTATTACAAAAATAGAGTTCCATAAAAAATTATTCCAAAACCGCCTTCATCATGTCGTCAAAAACTTTTTGACGTTTGGGTTGAAATGTTCCAAAAGTTTGAATCAAAACGTTATCTCAATGGCTCTTCTGAACTCAAGCTAAATCAAGCTGTGTGTTGATCCGAATTAGAGCAGATGAACAAACCCACGCGGTTTTTTTCTGAATTCAAACGAATATAAAACTGGGAAGGATACATGAAAAAAAATCAAAAGGGCATATAAAAAAGTAAAGTATCTTGAAACAACTGTCACTCCTTTTTATACCATTTTTTATCGCCCAACTTTCCGTGAATTCCTCAAACGACCCGGTTCCAAAATCATGGACTTTTTTTTTGGCACGTAAAAAGTCCGGTGATGTGAACGAATTCCAAGTAACGACAGCTTCAGAGTAGACTTTTTGTCTTCAGTTCTTGCAAAAAATGAGGTACCAAGAATAGAAAGTTCTCGGCCTACACCGCTGTGT</canonical>
            <polymorphic>TGACAAAAACAGTCTTGACTACTATGTGAGTTTCGAATGATTTGAAATTTTATAACTGTGTGATTTTTTCAGGGAGCAAGAGCCTCACAGTTGTGGGAAGAGGAGTTCCAACAATATGGATGGGATTCCACTACGATGGATGACAACGCCTCCAACATCAAAGACGCTACTCAAATGGCTTGGGCTGAGACTGGTTTGATTGGATGCGGGTTAAAGTATGTGGAAAGGACAAGTCTGGGGCAAGCCAGTTCAAGTATGTTGTGGTGTGCCATTATAAGAAACCGTAAGTAACTCTTGTTTTAAAATAGTAATGTATAATTTCAGAGGAAACAAAATCGGTGCTGAGATTTATCAGCCAGGAGACACCTGCACTGCTTGCTCGGCTGGCCTGACTTGTGAGACTGCTTCTGGATTGTGTGCTTAAACTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATAGTTGGTTCATAACTGCCTTTAAGAATTCGTTRTTACAAAAATAGAGTTCCATAAAAAATTATTCCAAAACCGCCTTCATCATGTCGTCAAAAACTTTTTGACGTTTGGGTTGAAATGTTCCAAAAGTTTGAATCAAAACGTTATCTCAATGGCTCTTCTGAACTCAAGCTAAATCAAGCTGTGTGTTGATCCGAATTAGAGCAGATGAACAAACCCACGCGGTTTTTTTCTGAATTCAAACGAATATAAAACTGGGAAGGATACATGAAAAAAAATCAAAAGGGCATATAAAAAAGTAAAGTATCTTGAAACAACTGTCACTCCTTTTTATACCATTTTTTATCGCCCAACTTTCCGTGAATTCCTCAAACGACCCGGTTCCAAAATCATGGACTTTTTTTTTGGCACGTAAAAAGTCCGGTGATGTGAACGAATTCCAAGTAACGACAGCTTCAGAGTAGACTTTTTGTCTTCAGTTCTTGCAAAAAATGAGGTACCAAGAATAGAAAGTTCTCGGCCTACACCGCTGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATAATTTCAGAGGAAACAAAA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTGACGACATGATGAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGTATAATTTCAGAGGAAACAAAATCGGTGCTGAGATTTATCAGCCAGGAGACACCTGCACTGCTTGCTCGGCTGGCCTGACTTGTGAGACTGCTTCTGGATTGTGTGCTTAAACTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATAGTTGGTTCATAACTGCCTTTAAGAATTCGTTATTACAAAAATAGAGTTCCATAAAAAATTATTCCAAAACCGCCTTCATCATGTCGTCAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TGTATAATTTCAGAGGAAACAAAATCGGTGCTGAGATTTATCAGCCAGGAGACACCTGCACTGCTTGCTCGGCTGGCCTGACTTGTGAGACTGCTTCTGGATTGTGTGCTTAAACTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATAGTTGGTTCATAACTGCCTTTAAGAATTCGTTRTTACAAAAATAGAGTTCCATAAAAAATTATTCCAAAACCGCCTTCATCATGTCGTCAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4818</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>17092</contig_pos>
        <strand>+</strand>
        <context>AAGAATTCGT[C/T]RTTACAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTTTAAAGTAATATAAATAGTTGGTTCATAACTGCCTTTAAGAATTCGT</left_flank>
        <right_flank>ATTACAAAAATAGAGTTCCATAAAAAATTATTCCAAAACCGCCTTCATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGACAAAAACAGTCTTGACTACTATGTGAGTTTCGAATGATTTGAAATTTTATAACTGTGTGATTTTTTCAGGGAGCAAGAGCCTCACAGTTGTGGGAAGAGGAGTTCCAACAATATGGATGGGATTCCACTACGATGGATGACAACGCCTCCAACATCAAAGACGCTACTCAAATGGCTTGGGCTGAGACTGGTTTGATTGGATGCGGGTTAAAGTATGTGGAAAGGACAAGTCTGGGGCAAGCCAGTTCAAGTATGTTGTGGTGTGCCATTATAAGAAACCGTAAGTAACTCTTGTTTTAAAATAGTAATGTATAATTTCAGAGGAAACAAAATCGGTGCTGAGATTTATCAGCCAGGAGACACCTGCACTGCTTGCTCGGCTGGCCTGACTTGTGAGACTGCTTCTGGATTGTGTGCTTAAACTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATAGTTGGTTCATAACTGCCTTTAAGAATTCGTTATTACAAAAATAGAGTTCCATAAAAAATTATTCCAAAACCGCCTTCATCATGTCGTCAAAAACTTTTTGACGTTTGGGTTGAAATGTTCCAAAAGTTTGAATCAAAACGTTATCTCAATGGCTCTTCTGAACTCAAGCTAAATCAAGCTGTGTGTTGATCCGAATTAGAGCAGATGAACAAACCCACGCGGTTTTTTTCTGAATTCAAACGAATATAAAACTGGGAAGGATACATGAAAAAAAATCAAAAGGGCATATAAAAAAGTAAAGTATCTTGAAACAACTGTCACTCCTTTTTATACCATTTTTTATCGCCCAACTTTCCGTGAATTCCTCAAACGACCCGGTTCCAAAATCATGGACTTTTTTTTTGGCACGTAAAAAGTCCGGTGATGTGAACGAATTCCAAGTAACGACAGCTTCAGAGTAGACTTTTTGTCTTCAGTTCTTGCAAAAAATGAGGTACCAAGAATAGAAAGTTCTCGGCCTACACCGCTGTG</canonical>
            <polymorphic>CTGACAAAAACAGTCTTGACTACTATGTGAGTTTCGAATGATTTGAAATTTTATAACTGTGTGATTTTTTCAGGGAGCAAGAGCCTCACAGTTGTGGGAAGAGGAGTTCCAACAATATGGATGGGATTCCACTACGATGGATGACAACGCCTCCAACATCAAAGACGCTACTCAAATGGCTTGGGCTGAGACTGGTTTGATTGGATGCGGGTTAAAGTATGTGGAAAGGACAAGTCTGGGGCAAGCCAGTTCAAGTATGTTGTGGTGTGCCATTATAAGAAACCGTAAGTAACTCTTGTTTTAAAATAGTAATGTATAATTTCAGAGGAAACAAAATCGGTGCTGAGATTTATCAGCCAGGAGACACCTGCACTGCTTGCTCGGCTGGCCTGACTTGTGAGACTGCTTCTGGATTGTGTGCTTAAACTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATAGTTGGTTCATAACTGCCTTTAAGAATTCGTYATTACAAAAATAGAGTTCCATAAAAAATTATTCCAAAACCGCCTTCATCATGTCGTCAAAAACTTTTTGACGTTTGGGTTGAAATGTTCCAAAAGTTTGAATCAAAACGTTATCTCAATGGCTCTTCTGAACTCAAGCTAAATCAAGCTGTGTGTTGATCCGAATTAGAGCAGATGAACAAACCCACGCGGTTTTTTTCTGAATTCAAACGAATATAAAACTGGGAAGGATACATGAAAAAAAATCAAAAGGGCATATAAAAAAGTAAAGTATCTTGAAACAACTGTCACTCCTTTTTATACCATTTTTTATCGCCCAACTTTCCGTGAATTCCTCAAACGACCCGGTTCCAAAATCATGGACTTTTTTTTTGGCACGTAAAAAGTCCGGTGATGTGAACGAATTCCAAGTAACGACAGCTTCAGAGTAGACTTTTTGTCTTCAGTTCTTGCAAAAAATGAGGTACCAAGAATAGAAAGTTCTCGGCCTACACCGCTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATAATTTCAGAGGAAACAAAA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTGACGACATGATGAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGTATAATTTCAGAGGAAACAAAATCGGTGCTGAGATTTATCAGCCAGGAGACACCTGCACTGCTTGCTCGGCTGGCCTGACTTGTGAGACTGCTTCTGGATTGTGTGCTTAAACTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATAGTTGGTTCATAACTGCCTTTAAGAATTCGTTATTACAAAAATAGAGTTCCATAAAAAATTATTCCAAAACCGCCTTCATCATGTCGTCAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TGTATAATTTCAGAGGAAACAAAATCGGTGCTGAGATTTATCAGCCAGGAGACACCTGCACTGCTTGCTCGGCTGGCCTGACTTGTGAGACTGCTTCTGGATTGTGTGCTTAAACTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATAGTTGGTTCATAACTGCCTTTAAGAATTCGTYATTACAAAAATAGAGTTCCATAAAAAATTATTCCAAAACCGCCTTCATCATGTCGTCAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4819</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>17063</contig_pos>
        <strand>+</strand>
        <context>ATATAAATAR[A/T]TGGTTCATAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTAAACTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATAG</left_flank>
        <right_flank>TGGTTCATAACTGCCTTTAAGAATTCGTTATTACAAAAATAGAGTTCCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGAACATTTTCTTTTCCTACAGTGCAACTGACAAAAACAGTCTTGACTACTATGTGAGTTTCGAATGATTTGAAATTTTATAACTGTGTGATTTTTTCAGGGAGCAAGAGCCTCACAGTTGTGGGAAGAGGAGTTCCAACAATATGGATGGGATTCCACTACGATGGATGACAACGCCTCCAACATCAAAGACGCTACTCAAATGGCTTGGGCTGAGACTGGTTTGATTGGATGCGGGTTAAAGTATGTGGAAAGGACAAGTCTGGGGCAAGCCAGTTCAAGTATGTTGTGGTGTGCCATTATAAGAAACCGTAAGTAACTCTTGTTTTAAAATAGTAATGTATAATTTCAGAGGAAACAAAATCGGTGCTGAGATTTATCAGCCAGGAGACACCTGCACTGCTTGCTCGGCTGGCCTGACTTGTGAGACTGCTTCTGGATTGTGTGCTTAAACTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATAGTTGGTTCATAACTGCCTTTAAGAATTCGTTATTACAAAAATAGAGTTCCATAAAAAATTATTCCAAAACCGCCTTCATCATGTCGTCAAAAACTTTTTGACGTTTGGGTTGAAATGTTCCAAAAGTTTGAATCAAAACGTTATCTCAATGGCTCTTCTGAACTCAAGCTAAATCAAGCTGTGTGTTGATCCGAATTAGAGCAGATGAACAAACCCACGCGGTTTTTTTCTGAATTCAAACGAATATAAAACTGGGAAGGATACATGAAAAAAAATCAAAAGGGCATATAAAAAAGTAAAGTATCTTGAAACAACTGTCACTCCTTTTTATACCATTTTTTATCGCCCAACTTTCCGTGAATTCCTCAAACGACCCGGTTCCAAAATCATGGACTTTTTTTTTGGCACGTAAAAAGTCCGGTGATGTGAACGAATTCCAAGTAACGACAGCTTCAGAGTAGACTTTTTGTCTTCAGTTCTTGCAAAAAATGAGGTACCAAGA</canonical>
            <polymorphic>AGAGAACATTTTCTTTTCCTACAGTGCAACTGACAAAAACAGTCTTGACTACTATGTGAGTTTCGAATGATTTGAAATTTTATAACTGTGTGATTTTTTCAGGGAGCAAGAGCCTCACAGTTGTGGGAAGAGGAGTTCCAACAATATGGATGGGATTCCACTACGATGGATGACAACGCCTCCAACATCAAAGACGCTACTCAAATGGCTTGGGCTGAGACTGGTTTGATTGGATGCGGGTTAAAGTATGTGGAAAGGACAAGTCTGGGGCAAGCCAGTTCAAGTATGTTGTGGTGTGCCATTATAAGAAACCGTAAGTAACTCTTGTTTTAAAATAGTAATGTATAATTTCAGAGGAAACAAAATCGGTGCTGAGATTTATCAGCCAGGAGACACCTGCACTGCTTGCTCGGCTGGCCTGACTTGTGAGACTGCTTCTGGATTGTGTGCTTAAACTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATAGWTGGTTCATAACTGCCTTTAAGAATTCGTTATTACAAAAATAGAGTTCCATAAAAAATTATTCCAAAACCGCCTTCATCATGTCGTCAAAAACTTTTTGACGTTTGGGTTGAAATGTTCCAAAAGTTTGAATCAAAACGTTATCTCAATGGCTCTTCTGAACTCAAGCTAAATCAAGCTGTGTGTTGATCCGAATTAGAGCAGATGAACAAACCCACGCGGTTTTTTTCTGAATTCAAACGAATATAAAACTGGGAAGGATACATGAAAAAAAATCAAAAGGGCATATAAAAAAGTAAAGTATCTTGAAACAACTGTCACTCCTTTTTATACCATTTTTTATCGCCCAACTTTCCGTGAATTCCTCAAACGACCCGGTTCCAAAATCATGGACTTTTTTTTTGGCACGTAAAAAGTCCGGTGATGTGAACGAATTCCAAGTAACGACAGCTTCAGAGTAGACTTTTTGTCTTCAGTTCTTGCAAAAAATGAGGTACCAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATAATTTCAGAGGAAACAAAA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTGACGACATGATGAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGTATAATTTCAGAGGAAACAAAATCGGTGCTGAGATTTATCAGCCAGGAGACACCTGCACTGCTTGCTCGGCTGGCCTGACTTGTGAGACTGCTTCTGGATTGTGTGCTTAAACTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATAGTTGGTTCATAACTGCCTTTAAGAATTCGTTATTACAAAAATAGAGTTCCATAAAAAATTATTCCAAAACCGCCTTCATCATGTCGTCAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TGTATAATTTCAGAGGAAACAAAATCGGTGCTGAGATTTATCAGCCAGGAGACACCTGCACTGCTTGCTCGGCTGGCCTGACTTGTGAGACTGCTTCTGGATTGTGTGCTTAAACTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATAGWTGGTTCATAACTGCCTTTAAGAATTCGTTATTACAAAAATAGAGTTCCATAAAAAATTATTCCAAAACCGCCTTCATCATGTCGTCAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4820</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>17062</contig_pos>
        <strand>+</strand>
        <context>AATATAAATA[A/G]WTGGTTCATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTTAAACTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATA</left_flank>
        <right_flank>TTGGTTCATAACTGCCTTTAAGAATTCGTTATTACAAAAATAGAGTTCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAGAACATTTTCTTTTCCTACAGTGCAACTGACAAAAACAGTCTTGACTACTATGTGAGTTTCGAATGATTTGAAATTTTATAACTGTGTGATTTTTTCAGGGAGCAAGAGCCTCACAGTTGTGGGAAGAGGAGTTCCAACAATATGGATGGGATTCCACTACGATGGATGACAACGCCTCCAACATCAAAGACGCTACTCAAATGGCTTGGGCTGAGACTGGTTTGATTGGATGCGGGTTAAAGTATGTGGAAAGGACAAGTCTGGGGCAAGCCAGTTCAAGTATGTTGTGGTGTGCCATTATAAGAAACCGTAAGTAACTCTTGTTTTAAAATAGTAATGTATAATTTCAGAGGAAACAAAATCGGTGCTGAGATTTATCAGCCAGGAGACACCTGCACTGCTTGCTCGGCTGGCCTGACTTGTGAGACTGCTTCTGGATTGTGTGCTTAAACTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATAGTTGGTTCATAACTGCCTTTAAGAATTCGTTATTACAAAAATAGAGTTCCATAAAAAATTATTCCAAAACCGCCTTCATCATGTCGTCAAAAACTTTTTGACGTTTGGGTTGAAATGTTCCAAAAGTTTGAATCAAAACGTTATCTCAATGGCTCTTCTGAACTCAAGCTAAATCAAGCTGTGTGTTGATCCGAATTAGAGCAGATGAACAAACCCACGCGGTTTTTTTCTGAATTCAAACGAATATAAAACTGGGAAGGATACATGAAAAAAAATCAAAAGGGCATATAAAAAAGTAAAGTATCTTGAAACAACTGTCACTCCTTTTTATACCATTTTTTATCGCCCAACTTTCCGTGAATTCCTCAAACGACCCGGTTCCAAAATCATGGACTTTTTTTTTGGCACGTAAAAAGTCCGGTGATGTGAACGAATTCCAAGTAACGACAGCTTCAGAGTAGACTTTTTGTCTTCAGTTCTTGCAAAAAATGAGGTACCAAG</canonical>
            <polymorphic>GAGAGAACATTTTCTTTTCCTACAGTGCAACTGACAAAAACAGTCTTGACTACTATGTGAGTTTCGAATGATTTGAAATTTTATAACTGTGTGATTTTTTCAGGGAGCAAGAGCCTCACAGTTGTGGGAAGAGGAGTTCCAACAATATGGATGGGATTCCACTACGATGGATGACAACGCCTCCAACATCAAAGACGCTACTCAAATGGCTTGGGCTGAGACTGGTTTGATTGGATGCGGGTTAAAGTATGTGGAAAGGACAAGTCTGGGGCAAGCCAGTTCAAGTATGTTGTGGTGTGCCATTATAAGAAACCGTAAGTAACTCTTGTTTTAAAATAGTAATGTATAATTTCAGAGGAAACAAAATCGGTGCTGAGATTTATCAGCCAGGAGACACCTGCACTGCTTGCTCGGCTGGCCTGACTTGTGAGACTGCTTCTGGATTGTGTGCTTAAACTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATARTTGGTTCATAACTGCCTTTAAGAATTCGTTATTACAAAAATAGAGTTCCATAAAAAATTATTCCAAAACCGCCTTCATCATGTCGTCAAAAACTTTTTGACGTTTGGGTTGAAATGTTCCAAAAGTTTGAATCAAAACGTTATCTCAATGGCTCTTCTGAACTCAAGCTAAATCAAGCTGTGTGTTGATCCGAATTAGAGCAGATGAACAAACCCACGCGGTTTTTTTCTGAATTCAAACGAATATAAAACTGGGAAGGATACATGAAAAAAAATCAAAAGGGCATATAAAAAAGTAAAGTATCTTGAAACAACTGTCACTCCTTTTTATACCATTTTTTATCGCCCAACTTTCCGTGAATTCCTCAAACGACCCGGTTCCAAAATCATGGACTTTTTTTTTGGCACGTAAAAAGTCCGGTGATGTGAACGAATTCCAAGTAACGACAGCTTCAGAGTAGACTTTTTGTCTTCAGTTCTTGCAAAAAATGAGGTACCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATAATTTCAGAGGAAACAAAA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTGACGACATGATGAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGTATAATTTCAGAGGAAACAAAATCGGTGCTGAGATTTATCAGCCAGGAGACACCTGCACTGCTTGCTCGGCTGGCCTGACTTGTGAGACTGCTTCTGGATTGTGTGCTTAAACTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATAGTTGGTTCATAACTGCCTTTAAGAATTCGTTATTACAAAAATAGAGTTCCATAAAAAATTATTCCAAAACCGCCTTCATCATGTCGTCAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TGTATAATTTCAGAGGAAACAAAATCGGTGCTGAGATTTATCAGCCAGGAGACACCTGCACTGCTTGCTCGGCTGGCCTGACTTGTGAGACTGCTTCTGGATTGTGTGCTTAAACTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATARTTGGTTCATAACTGCCTTTAAGAATTCGTTATTACAAAAATAGAGTTCCATAAAAAATTATTCCAAAACCGCCTTCATCATGTCGTCAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4823</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>16963</contig_pos>
        <strand>+</strand>
        <context>GAGACACCTG[C/T]ACTGCTTGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAGAGGAAACAAAATCGGTGCTGAGATTTATCAGCCAGGAGACACCTG</left_flank>
        <right_flank>ACTGCTTGCTCGGCTGGCCTGACTTGTGAGACTGCTTCTGGATTGTGTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTAAATGTTTTTTAGACTTGGGATTCGTCTCTTGCCACCTCTGCTCAAGCATTCGCCGAAACCTGCCCAACTAATCACTCGAATGCTGATGGACTTGGAGAGAACATTTTCTTTTCCTACAGTGCAACTGACAAAAACAGTCTTGACTACTATGTGAGTTTCGAATGATTTGAAATTTTATAACTGTGTGATTTTTTCAGGGAGCAAGAGCCTCACAGTTGTGGGAAGAGGAGTTCCAACAATATGGATGGGATTCCACTACGATGGATGACAACGCCTCCAACATCAAAGACGCTACTCAAATGGCTTGGGCTGAGACTGGTTTGATTGGATGCGGGTTAAAGTATGTGGAAAGGACAAGTCTGGGGCAAGCCAGTTCAAGTATGTTGTGGTGTGCCATTATAAGAAACCGTAAGTAACTCTTGTTTTAAAATAGTAATGTATAATTTCAGAGGAAACAAAATCGGTGCTGAGATTTATCAGCCAGGAGACACCTGCACTGCTTGCTCGGCTGGCCTGACTTGTGAGACTGCTTCTGGATTGTGTGCTTAAACTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATAGTTGGTTCATAACTGCCTTTAAGAATTCGTTATTACAAAAATAGAGTTCCATAAAAAATTATTCCAAAACCGCCTTCATCATGTCGTCAAAAACTTTTTGACGTTTGGGTTGAAATGTTCCAAAAGTTTGAATCAAAACGTTATCTCAATGGCTCTTCTGAACTCAAGCTAAATCAAGCTGTGTGTTGATCCGAATTAGAGCAGATGAACAAACCCACGCGGTTTTTTTCTGAATTCAAACGAATATAAAACTGGGAAGGATACATGAAAAAAAATCAAAAGGGCATATAAAAAAGTAAAGTATCTTGAAACAACTGTCACTCCTTTTTATACCATTTTTTATCGCCCAACTTTCCGTGAATTCCTCAAACGACCCGGTTCCAAAATCATGGACTTTTTTTT</canonical>
            <polymorphic>AATTAAATGTTTTTTAGACTTGGGATTCGTCTCTTGCCACCTCTGCTCAAGCATTCGCCGAAACCTGCCCAACTAATCACTCGAATGCTGATGGACTTGGAGAGAACATTTTCTTTTCCTACAGTGCAACTGACAAAAACAGTCTTGACTACTATGTGAGTTTCGAATGATTTGAAATTTTATAACTGTGTGATTTTTTCAGGGAGCAAGAGCCTCACAGTTGTGGGAAGAGGAGTTCCAACAATATGGATGGGATTCCACTACGATGGATGACAACGCCTCCAACATCAAAGACGCTACTCAAATGGCTTGGGCTGAGACTGGTTTGATTGGATGCGGGTTAAAGTATGTGGAAAGGACAAGTCTGGGGCAAGCCAGTTCAAGTATGTTGTGGTGTGCCATTATAAGAAACCGTAAGTAACTCTTGTTTTAAAATAGTAATGTATAATTTCAGAGGAAACAAAATCGGTGCTGAGATTTATCAGCCAGGAGACACCTGYACTGCTTGCTCGGCTGGCCTGACTTGTGAGACTGCTTCTGGATTGTGTGCTTAAACTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATAGTTGGTTCATAACTGCCTTTAAGAATTCGTTATTACAAAAATAGAGTTCCATAAAAAATTATTCCAAAACCGCCTTCATCATGTCGTCAAAAACTTTTTGACGTTTGGGTTGAAATGTTCCAAAAGTTTGAATCAAAACGTTATCTCAATGGCTCTTCTGAACTCAAGCTAAATCAAGCTGTGTGTTGATCCGAATTAGAGCAGATGAACAAACCCACGCGGTTTTTTTCTGAATTCAAACGAATATAAAACTGGGAAGGATACATGAAAAAAAATCAAAAGGGCATATAAAAAAGTAAAGTATCTTGAAACAACTGTCACTCCTTTTTATACCATTTTTTATCGCCCAACTTTCCGTGAATTCCTCAAACGACCCGGTTCCAAAATCATGGACTTTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCANNNNNTGC</site>
                <isoschizomers>
                    <enzyme>ApaBI</enzyme>
                    <enzyme>BstAPI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>495 463 42</canonical_bands>
                <polymorphic_bands>490 468 42</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>501 373 126</canonical_bands>
                <polymorphic_bands>874 126</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>232 103 92 73 47 43 41 40 39 39 35 32 32 32 27 25 24 19 8 6 3 2 2 2 2</canonical_bands>
                <polymorphic_bands>232 103 92 73 47 43 41 40 39 39 35 33 32 32 32 25 24 19 8 3 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTTCAAGTATGTTGTGGTGT</pcr_primer_p1>
		<pcr_primer_p2>TTCTTAAAGGCAGTTATGAACC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGTTCAAGTATGTTGTGGTGTGCCATTATAAGAAACCGTAAGTAACTCTTGTTTTAAAATAGTAATGTATAATTTCAGAGGAAACAAAATCGGTGCTGAGATTTATCAGCCAGGAGACACCTGCACTGCTTGCTCGGCTGGCCTGACTTGTGAGACTGCTTCTGGATTGTGTGCTTAAACTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATAGTTGGTTCATAACTGCCTTTAAGAA</canonical_amplicon>
		<polymorphic_amplicon>CAGTTCAAGTATGTTGTGGTGTGCCATTATAAGAAACCGTAAGTAACTCTTGTTTTAAAATAGTAATGTATAATTTCAGAGGAAACAAAATCGGTGCTGAGATTTATCAGCCAGGAGACACCTGYACTGCTTGCTCGGCTGGCCTGACTTGTGAGACTGCTTCTGGATTGTGTGCTTAAACTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATAGTTGGTTCATAACTGCCTTTAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4824</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>16895</contig_pos>
        <strand>+</strand>
        <context>CTCTTGTTTT[A/T]AAATAGTAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGTATGTTGTGGTGTGCCATTATAAGAAACCGTAAGTAACTCTTGTTTT</left_flank>
        <right_flank>AAATAGTAATGTATAATTTCAGAGGAAACAAAATCGGTGCTGAGATTTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGATCCATAAAACCACCAGCAACCAACATGCGCAAAATGGTGAGGTTATAATATTCTGATTACTTTGAATTAAATGTTTTTTAGACTTGGGATTCGTCTCTTGCCACCTCTGCTCAAGCATTCGCCGAAACCTGCCCAACTAATCACTCGAATGCTGATGGACTTGGAGAGAACATTTTCTTTTCCTACAGTGCAACTGACAAAAACAGTCTTGACTACTATGTGAGTTTCGAATGATTTGAAATTTTATAACTGTGTGATTTTTTCAGGGAGCAAGAGCCTCACAGTTGTGGGAAGAGGAGTTCCAACAATATGGATGGGATTCCACTACGATGGATGACAACGCCTCCAACATCAAAGACGCTACTCAAATGGCTTGGGCTGAGACTGGTTTGATTGGATGCGGGTTAAAGTATGTGGAAAGGACAAGTCTGGGGCAAGCCAGTTCAAGTATGTTGTGGTGTGCCATTATAAGAAACCGTAAGTAACTCTTGTTTTAAAATAGTAATGTATAATTTCAGAGGAAACAAAATCGGTGCTGAGATTTATCAGCCAGGAGACACCTGCACTGCTTGCTCGGCTGGCCTGACTTGTGAGACTGCTTCTGGATTGTGTGCTTAAACTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATAGTTGGTTCATAACTGCCTTTAAGAATTCGTTATTACAAAAATAGAGTTCCATAAAAAATTATTCCAAAACCGCCTTCATCATGTCGTCAAAAACTTTTTGACGTTTGGGTTGAAATGTTCCAAAAGTTTGAATCAAAACGTTATCTCAATGGCTCTTCTGAACTCAAGCTAAATCAAGCTGTGTGTTGATCCGAATTAGAGCAGATGAACAAACCCACGCGGTTTTTTTCTGAATTCAAACGAATATAAAACTGGGAAGGATACATGAAAAAAAATCAAAAGGGCATATAAAAAAGTAAAGTATCTTGAAACAACTGTCACTCCTTTTTATACC</canonical>
            <polymorphic>TGGATCCATAAAACCACCAGCAACCAACATGCGCAAAATGGTGAGGTTATAATATTCTGATTACTTTGAATTAAATGTTTTTTAGACTTGGGATTCGTCTCTTGCCACCTCTGCTCAAGCATTCGCCGAAACCTGCCCAACTAATCACTCGAATGCTGATGGACTTGGAGAGAACATTTTCTTTTCCTACAGTGCAACTGACAAAAACAGTCTTGACTACTATGTGAGTTTCGAATGATTTGAAATTTTATAACTGTGTGATTTTTTCAGGGAGCAAGAGCCTCACAGTTGTGGGAAGAGGAGTTCCAACAATATGGATGGGATTCCACTACGATGGATGACAACGCCTCCAACATCAAAGACGCTACTCAAATGGCTTGGGCTGAGACTGGTTTGATTGGATGCGGGTTAAAGTATGTGGAAAGGACAAGTCTGGGGCAAGCCAGTTCAAGTATGTTGTGGTGTGCCATTATAAGAAACCGTAAGTAACTCTTGTTTTWAAATAGTAATGTATAATTTCAGAGGAAACAAAATCGGTGCTGAGATTTATCAGCCAGGAGACACCTGCACTGCTTGCTCGGCTGGCCTGACTTGTGAGACTGCTTCTGGATTGTGTGCTTAAACTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATAGTTGGTTCATAACTGCCTTTAAGAATTCGTTATTACAAAAATAGAGTTCCATAAAAAATTATTCCAAAACCGCCTTCATCATGTCGTCAAAAACTTTTTGACGTTTGGGTTGAAATGTTCCAAAAGTTTGAATCAAAACGTTATCTCAATGGCTCTTCTGAACTCAAGCTAAATCAAGCTGTGTGTTGATCCGAATTAGAGCAGATGAACAAACCCACGCGGTTTTTTTCTGAATTCAAACGAATATAAAACTGGGAAGGATACATGAAAAAAAATCAAAAGGGCATATAAAAAAGTAAAGTATCTTGAAACAACTGTCACTCCTTTTTATACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 349 152</canonical_bands>
                <polymorphic_bands>651 349</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>338 315 121 89 71 35 31</canonical_bands>
                <polymorphic_bands>338 315 210 71 35 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTTCAAGTATGTTGTGGTGT</pcr_primer_p1>
		<pcr_primer_p2>TTCTTAAAGGCAGTTATGAACC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGTTCAAGTATGTTGTGGTGTGCCATTATAAGAAACCGTAAGTAACTCTTGTTTTAAAATAGTAATGTATAATTTCAGAGGAAACAAAATCGGTGCTGAGATTTATCAGCCAGGAGACACCTGCACTGCTTGCTCGGCTGGCCTGACTTGTGAGACTGCTTCTGGATTGTGTGCTTAAACTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATAGTTGGTTCATAACTGCCTTTAAGAA</canonical_amplicon>
		<polymorphic_amplicon>CAGTTCAAGTATGTTGTGGTGTGCCATTATAAGAAACCGTAAGTAACTCTTGTTTTWAAATAGTAATGTATAATTTCAGAGGAAACAAAATCGGTGCTGAGATTTATCAGCCAGGAGACACCTGCACTGCTTGCTCGGCTGGCCTGACTTGTGAGACTGCTTCTGGATTGTGTGCTTAAACTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATAGTTGGTTCATAACTGCCTTTAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4825</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>42330</contig_pos>
        <strand></strand>
        <context>agatatcata[A/T]gtttgttaac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATATGTGCCTTTTGATCACAATTATCTAGATTCGTTTGAGAGATATCATA</left_flank>
        <right_flank>GTTTGTTAACTGATAAAATACTTTTGATGTTATGACAAATATTATATCAG</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGCGCATTTTCTCATCTCTAGGTCTTGCAAAAAGATAGATCATTCATATATTTTTTGTCGAATGAGCTGGATTTGTTGAGCCATTGAATCGGGCGGGGCGCTTCGAGAAAAGCGGATTGCTCTAGAAATGTGATCAAGATGAGAAGTGGAGGGTGATACAGAGCAGGCTGGAATCTCAGTCATTGTTTGGAGCATCGGGAATATCATGTTGCCGATCTACCCGCTTCAGTATGGAGTACTGGATCCTTCGCAACCTCAGATGGTCCGGTGTCAAGTTTGTTACCACTCGGCGTTTGGTATGAATTATGGAGTGAGTTGGGAATAAAGCTACAGTAACTAGAGTACTCCACTGTTATCAGTTTACAGTTTAGTAAAATGTACTGTAAATGGTCTGTGCATATAACTCTCTGAAACATGTACCGTATTCGCTTAACAAGAGGTTTGCCCTATATGTGCCTTTTGATCACAATTATCTAGATTCGTTTGAGAGATATCATAAGTTTGTTAACTGATAAAATACTTTTGATGTTATGACAAATATTATATCAGTTGAAATTTTAATGATGTCTGAAGTAGGAACGGTGAGAATTCCAAATGCAAACGTTAAAAACGGGGCTTTGCAACGGATCTTCAACTGTTAACCATCTATCAAAGCAATCCTCGTACTAAAGCTTTCCAGTGGAAAGGTAATATTCCTTTCCTAATTTACAGGTCCCATCATGCAATGCTTGTAAGATGTTCTTCCGAAGAGTGGTTCTCAACAATGTCACTTATCAGTGCCGTGATTTGAGACGGTGCTATTGGAGAGTTGGTGAGTTATGGTTTACAGTAACTTTCACTTACTGTATTTGTTCTAATATTATAGAAGCCCATCCAAACCGACACTCTGAGCACAATTATCTCGATTCCAGTAAACGATATCAACATTTTCTCAATTGACAAATTATTTATCATAGTGTCGCCTATATTTTATCAGTTCTTAAATTTCCGACATCTTTC</canonical>
            <polymorphic>ACGCGCATTTTCTCATCTCTAGGTCTTGCAAAAAGATAGATCATTCATATATTTTTTGTCGAATGAGCTGGATTTGTTGAGCCATTGAATCGGGCGGGGCGCTTCGAGAAAAGCGGATTGCTCTAGAAATGTGATCAAGATGAGAAGTGGAGGGTGATACAGAGCAGGCTGGAATCTCAGTCATTGTTTGGAGCATCGGGAATATCATGTTGCCGATCTACCCGCTTCAGTATGGAGTACTGGATCCTTCGCAACCTCAGATGGTCCGGTGTCAAGTTTGTTACCACTCGGCGTTTGGTATGAATTATGGAGTGAGTTGGGAATAAAGCTACAGTAACTAGAGTACTCCACTGTTATCAGTTTACAGTTTAGTAAAATGTACTGTAAATGGTCTGTGCATATAACTCTCTGAAACATGTACCGTATTCGCTTAACAAGAGGTTTGCCCTATATGTGCCTTTTGATCACAATTATCTAGATTCGTTTGAGAGATATCATAWGTTTGTTAACTGATAAAATACTTTTGATGTTATGACAAATATTATATCAGTTGAAATTTTAATGATGTCTGAAGTAGGAACGGTGAGAATTCCAAATGCAAACGTTAAAAACGGGGCTTTGCAACGGATCTTCAACTGTTAACCATCTATCAAAGCAATCCTCGTACTAAAGCTTTCCAGTGGAAAGGTAATATTCCTTTCCTAATTTACAGGTCCCATCATGCAATGCTTGTAAGATGTTCTTCCGAAGAGTGGTTCTCAACAATGTCACTTATCAGTGCCGTGATTTGAGACGGTGCTATTGGAGAGTTGGTGAGTTATGGTTTACAGTAACTTTCACTTACTGTATTTGTTCTAATATTATAGAAGCCCATCCAAACCGACACTCTGAGCACAATTATCTCGATTCCAGTAAACGATATCAACATTTTCTCAATTGACAAATTATTTATCATAGTGTCGCCTATATTTTATCAGTTCTTAAATTTCCGACATCTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTCTGAAACATGTACCGTATT</pcr_primer_p1>
		<pcr_primer_p2>TTGATAGATGGTTAACAGTTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCTCTGAAACATGTACCGTATTCGCTTAACAAGAGGTTTGCCCTATATGTGCCTTTTGATCACAATTATCTAGATTCGTTTGAGAGATATCATAAGTTTGTTAACTGATAAAATACTTTTGATGTTATGACAAATATTATATCAGTTGAAATTTTAATGATGTCTGAAGTAGGAACGGTGAGAATTCCAAATGCAAACGTTAAAAACGGGGCTTTGCAACGGATCTTCAACTGTTAACCATCTATCAA</canonical_amplicon>
		<polymorphic_amplicon>CTCTCTGAAACATGTACCGTATTCGCTTAACAAGAGGTTTGCCCTATATGTGCCTTTTGATCACAATTATCTAGATTCGTTTGAGAGATATCATAWGTTTGTTAACTGATAAAATACTTTTGATGTTATGACAAATATTATATCAGTTGAAATTTTAATGATGTCTGAAGTAGGAACGGTGAGAATTCCAAATGCAAACGTTAAAAACGGGGCTTTGCAACGGATCTTCAACTGTTAACCATCTATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4826</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>42377</contig_pos>
        <strand></strand>
        <context>aaatattata[T/C]cagttgaaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATAAGTTTGTTAACTGATAAAATACTTTTGATGTTATGACAAATATTATA</left_flank>
        <right_flank>CAGTTGAAATTTTAATGATGTCTGAAGTAGGAACGGTGAGAATTCCAAAT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATATTTTTTGTCGAATGAGCTGGATTTGTTGAGCCATTGAATCGGGCGGGGCGCTTCGAGAAAAGCGGATTGCTCTAGAAATGTGATCAAGATGAGAAGTGGAGGGTGATACAGAGCAGGCTGGAATCTCAGTCATTGTTTGGAGCATCGGGAATATCATGTTGCCGATCTACCCGCTTCAGTATGGAGTACTGGATCCTTCGCAACCTCAGATGGTCCGGTGTCAAGTTTGTTACCACTCGGCGTTTGGTATGAATTATGGAGTGAGTTGGGAATAAAGCTACAGTAACTAGAGTACTCCACTGTTATCAGTTTACAGTTTAGTAAAATGTACTGTAAATGGTCTGTGCATATAACTCTCTGAAACATGTACCGTATTCGCTTAACAAGAGGTTTGCCCTATATGTGCCTTTTGATCACAATTATCTAGATTCGTTTGAGAGATATCATAAGTTTGTTAACTGATAAAATACTTTTGATGTTATGACAAATATTATATCAGTTGAAATTTTAATGATGTCTGAAGTAGGAACGGTGAGAATTCCAAATGCAAACGTTAAAAACGGGGCTTTGCAACGGATCTTCAACTGTTAACCATCTATCAAAGCAATCCTCGTACTAAAGCTTTCCAGTGGAAAGGTAATATTCCTTTCCTAATTTACAGGTCCCATCATGCAATGCTTGTAAGATGTTCTTCCGAAGAGTGGTTCTCAACAATGTCACTTATCAGTGCCGTGATTTGAGACGGTGCTATTGGAGAGTTGGTGAGTTATGGTTTACAGTAACTTTCACTTACTGTATTTGTTCTAATATTATAGAAGCCCATCCAAACCGACACTCTGAGCACAATTATCTCGATTCCAGTAAACGATATCAACATTTTCTCAATTGACAAATTATTTATCATAGTGTCGCCTATATTTTATCAGTTCTTAAATTTCCGACATCTTTCACAGAAATCGAGATAATTAAGATCGAAATTGACGGTTTGGTTAAGCT</canonical>
            <polymorphic>TATATTTTTTGTCGAATGAGCTGGATTTGTTGAGCCATTGAATCGGGCGGGGCGCTTCGAGAAAAGCGGATTGCTCTAGAAATGTGATCAAGATGAGAAGTGGAGGGTGATACAGAGCAGGCTGGAATCTCAGTCATTGTTTGGAGCATCGGGAATATCATGTTGCCGATCTACCCGCTTCAGTATGGAGTACTGGATCCTTCGCAACCTCAGATGGTCCGGTGTCAAGTTTGTTACCACTCGGCGTTTGGTATGAATTATGGAGTGAGTTGGGAATAAAGCTACAGTAACTAGAGTACTCCACTGTTATCAGTTTACAGTTTAGTAAAATGTACTGTAAATGGTCTGTGCATATAACTCTCTGAAACATGTACCGTATTCGCTTAACAAGAGGTTTGCCCTATATGTGCCTTTTGATCACAATTATCTAGATTCGTTTGAGAGATATCATAAGTTTGTTAACTGATAAAATACTTTTGATGTTATGACAAATATTATAYCAGTTGAAATTTTAATGATGTCTGAAGTAGGAACGGTGAGAATTCCAAATGCAAACGTTAAAAACGGGGCTTTGCAACGGATCTTCAACTGTTAACCATCTATCAAAGCAATCCTCGTACTAAAGCTTTCCAGTGGAAAGGTAATATTCCTTTCCTAATTTACAGGTCCCATCATGCAATGCTTGTAAGATGTTCTTCCGAAGAGTGGTTCTCAACAATGTCACTTATCAGTGCCGTGATTTGAGACGGTGCTATTGGAGAGTTGGTGAGTTATGGTTTACAGTAACTTTCACTTACTGTATTTGTTCTAATATTATAGAAGCCCATCCAAACCGACACTCTGAGCACAATTATCTCGATTCCAGTAAACGATATCAACATTTTCTCAATTGACAAATTATTTATCATAGTGTCGCCTATATTTTATCAGTTCTTAAATTTCCGACATCTTTCACAGAAATCGAGATAATTAAGATCGAAATTGACGGTTTGGTTAAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTCTGAAACATGTACCGTATT</pcr_primer_p1>
		<pcr_primer_p2>TTGATAGATGGTTAACAGTTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCTCTGAAACATGTACCGTATTCGCTTAACAAGAGGTTTGCCCTATATGTGCCTTTTGATCACAATTATCTAGATTCGTTTGAGAGATATCATAAGTTTGTTAACTGATAAAATACTTTTGATGTTATGACAAATATTATATCAGTTGAAATTTTAATGATGTCTGAAGTAGGAACGGTGAGAATTCCAAATGCAAACGTTAAAAACGGGGCTTTGCAACGGATCTTCAACTGTTAACCATCTATCAA</canonical_amplicon>
		<polymorphic_amplicon>CTCTCTGAAACATGTACCGTATTCGCTTAACAAGAGGTTTGCCCTATATGTGCCTTTTGATCACAATTATCTAGATTCGTTTGAGAGATATCATAAGTTTGTTAACTGATAAAATACTTTTGATGTTATGACAAATATTATAYCAGTTGAAATTTTAATGATGTCTGAAGTAGGAACGGTGAGAATTCCAAATGCAAACGTTAAAAACGGGGCTTTGCAACGGATCTTCAACTGTTAACCATCTATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4827</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>42497</contig_pos>
        <strand>+</strand>
        <context>AATCCTCGTA[A/C]TAAAGCTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTTGCAACGGATCTTCAACTGTTAACCATCTATCAAAGCAATCCTCGTA</left_flank>
        <right_flank>TAAAGCTTTCCAGTGGAAAGGTAATATTCCTTTCCTAATTTACAGGTCCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTGGAATCTCAGTCATTGTTTGGAGCATCGGGAATATCATGTTGCCGATCTACCCGCTTCAGTATGGAGTACTGGATCCTTCGCAACCTCAGATGGTCCGGTGTCAAGTTTGTTACCACTCGGCGTTTGGTATGAATTATGGAGTGAGTTGGGAATAAAGCTACAGTAACTAGAGTACTCCACTGTTATCAGTTTACAGTTTAGTAAAATGTACTGTAAATGGTCTGTGCATATAACTCTCTGAAACATGTACCGTATTCGCTTAACAAGAGGTTTGCCCTATATGTGCCTTTTGATCACAATTATCTAGATTCGTTTGAGAGATATCATAAGTTTGTTAACTGATAAAATACTTTTGATGTTATGACAAATATTATATCAGTTGAAATTTTAATGATGTCTGAAGTAGGAACGGTGAGAATTCCAAATGCAAACGTTAAAAACGGGGCTTTGCAACGGATCTTCAACTGTTAACCATCTATCAAAGCAATCCTCGTACTAAAGCTTTCCAGTGGAAAGGTAATATTCCTTTCCTAATTTACAGGTCCCATCATGCAATGCTTGTAAGATGTTCTTCCGAAGAGTGGTTCTCAACAATGTCACTTATCAGTGCCGTGATTTGAGACGGTGCTATTGGAGAGTTGGTGAGTTATGGTTTACAGTAACTTTCACTTACTGTATTTGTTCTAATATTATAGAAGCCCATCCAAACCGACACTCTGAGCACAATTATCTCGATTCCAGTAAACGATATCAACATTTTCTCAATTGACAAATTATTTATCATAGTGTCGCCTATATTTTATCAGTTCTTAAATTTCCGACATCTTTCACAGAAATCGAGATAATTAAGATCGAAATTGACGGTTTGGTTAAGCTTCTACATCTACGTTTACCATGGTCCAGCAGGTTGGGGGGGGGGGGGGGGGGTTAGCGAGAGAAGGATTTTAATTAAATTGTCTTCAGGTCTGCATAATATGAATTACCGAGCCTTGTGAT</canonical>
            <polymorphic>GCTGGAATCTCAGTCATTGTTTGGAGCATCGGGAATATCATGTTGCCGATCTACCCGCTTCAGTATGGAGTACTGGATCCTTCGCAACCTCAGATGGTCCGGTGTCAAGTTTGTTACCACTCGGCGTTTGGTATGAATTATGGAGTGAGTTGGGAATAAAGCTACAGTAACTAGAGTACTCCACTGTTATCAGTTTACAGTTTAGTAAAATGTACTGTAAATGGTCTGTGCATATAACTCTCTGAAACATGTACCGTATTCGCTTAACAAGAGGTTTGCCCTATATGTGCCTTTTGATCACAATTATCTAGATTCGTTTGAGAGATATCATAAGTTTGTTAACTGATAAAATACTTTTGATGTTATGACAAATATTATATCAGTTGAAATTTTAATGATGTCTGAAGTAGGAACGGTGAGAATTCCAAATGCAAACGTTAAAAACGGGGCTTTGCAACGGATCTTCAACTGTTAACCATCTATCAAAGCAATCCTCGTAMTAAAGCTTTCCAGTGGAAAGGTAATATTCCTTTCCTAATTTACAGGTCCCATCATGCAATGCTTGTAAGATGTTCTTCCGAAGAGTGGTTCTCAACAATGTCACTTATCAGTGCCGTGATTTGAGACGGTGCTATTGGAGAGTTGGTGAGTTATGGTTTACAGTAACTTTCACTTACTGTATTTGTTCTAATATTATAGAAGCCCATCCAAACCGACACTCTGAGCACAATTATCTCGATTCCAGTAAACGATATCAACATTTTCTCAATTGACAAATTATTTATCATAGTGTCGCCTATATTTTATCAGTTCTTAAATTTCCGACATCTTTCACAGAAATCGAGATAATTAAGATCGAAATTGACGGTTTGGTTAAGCTTCTACATCTACGTTTACCATGGTCCAGCAGGTTGGGGGGGGGGGGGGGGGGTTAGCGAGAGAAGGATTTTAATTAAATTGTCTTCAGGTCTGCATAATATGAATTACCGAGCCTTGTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 246 106 71 39 36</canonical_bands>
                <polymorphic_bands>748 106 71 39 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGAATTCCAAATGCAAAC</pcr_primer_p1>
		<pcr_primer_p2>CTGTAAACCATAACTCACCAACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGAGAATTCCAAATGCAAACGTTAAAAACGGGGCTTTGCAACGGATCTTCAACTGTTAACCATCTATCAAAGCAATCCTCGTACTAAAGCTTTCCAGTGGAAAGGTAATATTCCTTTCCTAATTTACAGGTCCCATCATGCAATGCTTGTAAGATGTTCTTCCGAAGAGTGGTTCTCAACAATGTCACTTATCAGTGCCGTGATTTGAGACGGTGCTATTGGAGAGTTGGTGAGTTATGGTTTACAG</canonical_amplicon>
		<polymorphic_amplicon>TGAGAATTCCAAATGCAAACGTTAAAAACGGGGCTTTGCAACGGATCTTCAACTGTTAACCATCTATCAAAGCAATCCTCGTAMTAAAGCTTTCCAGTGGAAAGGTAATATTCCTTTCCTAATTTACAGGTCCCATCATGCAATGCTTGTAAGATGTTCTTCCGAAGAGTGGTTCTCAACAATGTCACTTATCAGTGCCGTGATTTGAGACGGTGCTATTGGAGAGTTGGTGAGTTATGGTTTACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4828</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>42789</contig_pos>
        <strand></strand>
        <context>ttatcatagt[G/A]tygcctatat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CCAGTAAACGATATCAACATTTTCTCAATTGACAAATTATTTATCATAGT</left_flank>
        <right_flank>TCGCCTATATTTTATCAGTTCTTAAATTTCCGACATCTTTCACAGAAATC</right_flank>
        <qual_score>35</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGATCACAATTATCTAGATTCGTTTGAGAGATATCATAAGTTTGTTAACTGATAAAATACTTTTGATGTTATGACAAATATTATATCAGTTGAAATTTTAATGATGTCTGAAGTAGGAACGGTGAGAATTCCAAATGCAAACGTTAAAAACGGGGCTTTGCAACGGATCTTCAACTGTTAACCATCTATCAAAGCAATCCTCGTACTAAAGCTTTCCAGTGGAAAGGTAATATTCCTTTCCTAATTTACAGGTCCCATCATGCAATGCTTGTAAGATGTTCTTCCGAAGAGTGGTTCTCAACAATGTCACTTATCAGTGCCGTGATTTGAGACGGTGCTATTGGAGAGTTGGTGAGTTATGGTTTACAGTAACTTTCACTTACTGTATTTGTTCTAATATTATAGAAGCCCATCCAAACCGACACTCTGAGCACAATTATCTCGATTCCAGTAAACGATATCAACATTTTCTCAATTGACAAATTATTTATCATAGTGTCGCCTATATTTTATCAGTTCTTAAATTTCCGACATCTTTCACAGAAATCGAGATAATTAAGATCGAAATTGACGGTTTGGTTAAGCTTCTACATCTACGTTTACCATGGTCCAGCAGGTTGGGGGGGGGGGGGGGGGGTTAGCGAGAGAAGGATTTTAATTAAATTGTCTTCAGGTCTGCATAATATGAATTACCGAGCCTTGTGATTCATCAACTCACAGCATGGAGCAAGAGCTTGATAGTTTTTTTTTACTTTGCTTAGCTTCATACTACATACCAAAATTACCATAAATCATGTAATAAAAAGACACGGTAGATTTCATACTTGTCGACAGGCCGATTCCGGACCGGCACGGGCGGGAAAAGCACTCGTTTCACATTTCAAATTGTGAGCATAACAACATACGAGATGATAGAGCTCAATTATAAAACCCGACCAGCATTTAAATCTTATAAAACCCGACCAGAAAACCCGACCAGCATTTAAATCAGTAACCAG</canonical>
            <polymorphic>TTTGATCACAATTATCTAGATTCGTTTGAGAGATATCATAAGTTTGTTAACTGATAAAATACTTTTGATGTTATGACAAATATTATATCAGTTGAAATTTTAATGATGTCTGAAGTAGGAACGGTGAGAATTCCAAATGCAAACGTTAAAAACGGGGCTTTGCAACGGATCTTCAACTGTTAACCATCTATCAAAGCAATCCTCGTACTAAAGCTTTCCAGTGGAAAGGTAATATTCCTTTCCTAATTTACAGGTCCCATCATGCAATGCTTGTAAGATGTTCTTCCGAAGAGTGGTTCTCAACAATGTCACTTATCAGTGCCGTGATTTGAGACGGTGCTATTGGAGAGTTGGTGAGTTATGGTTTACAGTAACTTTCACTTACTGTATTTGTTCTAATATTATAGAAGCCCATCCAAACCGACACTCTGAGCACAATTATCTCGATTCCAGTAAACGATATCAACATTTTCTCAATTGACAAATTATTTATCATAGTRTCGCCTATATTTTATCAGTTCTTAAATTTCCGACATCTTTCACAGAAATCGAGATAATTAAGATCGAAATTGACGGTTTGGTTAAGCTTCTACATCTACGTTTACCATGGTCCAGCAGGTTGGGGGGGGGGGGGGGGGGTTAGCGAGAGAAGGATTTTAATTAAATTGTCTTCAGGTCTGCATAATATGAATTACCGAGCCTTGTGATTCATCAACTCACAGCATGGAGCAAGAGCTTGATAGTTTTTTTTTACTTTGCTTAGCTTCATACTACATACCAAAATTACCATAAATCATGTAATAAAAAGACACGGTAGATTTCATACTTGTCGACAGGCCGATTCCGGACCGGCACGGGCGGGAAAAGCACTCGTTTCACATTTCAAATTGTGAGCATAACAACATACGAGATGATAGAGCTCAATTATAAAACCCGACCAGCATTTAAATCTTATAAAACCCGACCAGAAAACCCGACCAGCATTTAAATCAGTAACCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>164 118 108 97 92 72 65 46 43 42 24 17 16 15 14 13 13 10 9 9 8 5</canonical_bands>
                <polymorphic_bands>164 118 108 107 97 92 72 46 43 24 17 16 15 14 13 13 10 9 9 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTATGGTTTACAGTAACTTTCACTT</pcr_primer_p1>
		<pcr_primer_p2>CTGGACCATGGTAAACGTAG</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>GTTATGGTTTACAGTAACTTTCACTTACTGTATTTGTTCTAATATTATAGAAGCCCATCCAAACCGACACTCTGAGCACAATTATCTCGATTCCAGTAAACGATATCAACATTTTCTCAATTGACAAATTATTTATCATAGTGTCGCCTATATTTTATCAGTTCTTAAATTTCCGACATCTTTCACAGAAATCGAGATAATTAAGATCGAAATTGACGGTTTGGTTAAGCTTCTACATCTACGTTTACCATGGTCCAG</canonical_amplicon>
		<polymorphic_amplicon>GTTATGGTTTACAGTAACTTTCACTTACTGTATTTGTTCTAATATTATAGAAGCCCATCCAAACCGACACTCTGAGCACAATTATCTCGATTCCAGTAAACGATATCAACATTTTCTCAATTGACAAATTATTTATCATAGTRTCGCCTATATTTTATCAGTTCTTAAATTTCCGACATCTTTCACAGAAATCGAGATAATTAAGATCGAAATTGACGGTTTGGTTAAGCTTCTACATCTACGTTTACCATGGTCCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4829</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>42791</contig_pos>
        <strand></strand>
        <context>atcatagtrt[C/T]gcctatattt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTAAACGATATCAACATTTTCTCAATTGACAAATTATTTATCATAGTGT</left_flank>
        <right_flank>GCCTATATTTTATCAGTTCTTAAATTTCCGACATCTTTCACAGAAATCGA</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATCACAATTATCTAGATTCGTTTGAGAGATATCATAAGTTTGTTAACTGATAAAATACTTTTGATGTTATGACAAATATTATATCAGTTGAAATTTTAATGATGTCTGAAGTAGGAACGGTGAGAATTCCAAATGCAAACGTTAAAAACGGGGCTTTGCAACGGATCTTCAACTGTTAACCATCTATCAAAGCAATCCTCGTACTAAAGCTTTCCAGTGGAAAGGTAATATTCCTTTCCTAATTTACAGGTCCCATCATGCAATGCTTGTAAGATGTTCTTCCGAAGAGTGGTTCTCAACAATGTCACTTATCAGTGCCGTGATTTGAGACGGTGCTATTGGAGAGTTGGTGAGTTATGGTTTACAGTAACTTTCACTTACTGTATTTGTTCTAATATTATAGAAGCCCATCCAAACCGACACTCTGAGCACAATTATCTCGATTCCAGTAAACGATATCAACATTTTCTCAATTGACAAATTATTTATCATAGTGTCGCCTATATTTTATCAGTTCTTAAATTTCCGACATCTTTCACAGAAATCGAGATAATTAAGATCGAAATTGACGGTTTGGTTAAGCTTCTACATCTACGTTTACCATGGTCCAGCAGGTTGGGGGGGGGGGGGGGGGGTTAGCGAGAGAAGGATTTTAATTAAATTGTCTTCAGGTCTGCATAATATGAATTACCGAGCCTTGTGATTCATCAACTCACAGCATGGAGCAAGAGCTTGATAGTTTTTTTTTACTTTGCTTAGCTTCATACTACATACCAAAATTACCATAAATCATGTAATAAAAAGACACGGTAGATTTCATACTTGTCGACAGGCCGATTCCGGACCGGCACGGGCGGGAAAAGCACTCGTTTCACATTTCAAATTGTGAGCATAACAACATACGAGATGATAGAGCTCAATTATAAAACCCGACCAGCATTTAAATCTTATAAAACCCGACCAGAAAACCCGACCAGCATTTAAATCAGTAACCAGGT</canonical>
            <polymorphic>TGATCACAATTATCTAGATTCGTTTGAGAGATATCATAAGTTTGTTAACTGATAAAATACTTTTGATGTTATGACAAATATTATATCAGTTGAAATTTTAATGATGTCTGAAGTAGGAACGGTGAGAATTCCAAATGCAAACGTTAAAAACGGGGCTTTGCAACGGATCTTCAACTGTTAACCATCTATCAAAGCAATCCTCGTACTAAAGCTTTCCAGTGGAAAGGTAATATTCCTTTCCTAATTTACAGGTCCCATCATGCAATGCTTGTAAGATGTTCTTCCGAAGAGTGGTTCTCAACAATGTCACTTATCAGTGCCGTGATTTGAGACGGTGCTATTGGAGAGTTGGTGAGTTATGGTTTACAGTAACTTTCACTTACTGTATTTGTTCTAATATTATAGAAGCCCATCCAAACCGACACTCTGAGCACAATTATCTCGATTCCAGTAAACGATATCAACATTTTCTCAATTGACAAATTATTTATCATAGTGTYGCCTATATTTTATCAGTTCTTAAATTTCCGACATCTTTCACAGAAATCGAGATAATTAAGATCGAAATTGACGGTTTGGTTAAGCTTCTACATCTACGTTTACCATGGTCCAGCAGGTTGGGGGGGGGGGGGGGGGGTTAGCGAGAGAAGGATTTTAATTAAATTGTCTTCAGGTCTGCATAATATGAATTACCGAGCCTTGTGATTCATCAACTCACAGCATGGAGCAAGAGCTTGATAGTTTTTTTTTACTTTGCTTAGCTTCATACTACATACCAAAATTACCATAAATCATGTAATAAAAAGACACGGTAGATTTCATACTTGTCGACAGGCCGATTCCGGACCGGCACGGGCGGGAAAAGCACTCGTTTCACATTTCAAATTGTGAGCATAACAACATACGAGATGATAGAGCTCAATTATAAAACCCGACCAGCATTTAAATCTTATAAAACCCGACCAGAAAACCCGACCAGCATTTAAATCAGTAACCAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTATGGTTTACAGTAACTTTCACTT</pcr_primer_p1>
		<pcr_primer_p2>CTGGACCATGGTAAACGTAG</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>GTTATGGTTTACAGTAACTTTCACTTACTGTATTTGTTCTAATATTATAGAAGCCCATCCAAACCGACACTCTGAGCACAATTATCTCGATTCCAGTAAACGATATCAACATTTTCTCAATTGACAAATTATTTATCATAGTGTCGCCTATATTTTATCAGTTCTTAAATTTCCGACATCTTTCACAGAAATCGAGATAATTAAGATCGAAATTGACGGTTTGGTTAAGCTTCTACATCTACGTTTACCATGGTCCAG</canonical_amplicon>
		<polymorphic_amplicon>GTTATGGTTTACAGTAACTTTCACTTACTGTATTTGTTCTAATATTATAGAAGCCCATCCAAACCGACACTCTGAGCACAATTATCTCGATTCCAGTAAACGATATCAACATTTTCTCAATTGACAAATTATTTATCATAGTGTYGCCTATATTTTATCAGTTCTTAAATTTCCGACATCTTTCACAGAAATCGAGATAATTAAGATCGAAATTGACGGTTTGGTTAAGCTTCTACATCTACGTTTACCATGGTCCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4830</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>42861</contig_pos>
        <strand></strand>
        <context>gatcgaaatt[G/T]acggtttggt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTAAATTTCCGACATCTTTCACAGAAATCGAGATAATTAAGATCGAAATT</left_flank>
        <right_flank>ACGGTTTGGTTAAGCTTCTACATCTACGTTTACCATGGTCCAGCAGGTTG</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGACAAATATTATATCAGTTGAAATTTTAATGATGTCTGAAGTAGGAACGGTGAGAATTCCAAATGCAAACGTTAAAAACGGGGCTTTGCAACGGATCTTCAACTGTTAACCATCTATCAAAGCAATCCTCGTACTAAAGCTTTCCAGTGGAAAGGTAATATTCCTTTCCTAATTTACAGGTCCCATCATGCAATGCTTGTAAGATGTTCTTCCGAAGAGTGGTTCTCAACAATGTCACTTATCAGTGCCGTGATTTGAGACGGTGCTATTGGAGAGTTGGTGAGTTATGGTTTACAGTAACTTTCACTTACTGTATTTGTTCTAATATTATAGAAGCCCATCCAAACCGACACTCTGAGCACAATTATCTCGATTCCAGTAAACGATATCAACATTTTCTCAATTGACAAATTATTTATCATAGTGTCGCCTATATTTTATCAGTTCTTAAATTTCCGACATCTTTCACAGAAATCGAGATAATTAAGATCGAAATTGACGGTTTGGTTAAGCTTCTACATCTACGTTTACCATGGTCCAGCAGGTTGGGGGGGGGGGGGGGGGGTTAGCGAGAGAAGGATTTTAATTAAATTGTCTTCAGGTCTGCATAATATGAATTACCGAGCCTTGTGATTCATCAACTCACAGCATGGAGCAAGAGCTTGATAGTTTTTTTTTACTTTGCTTAGCTTCATACTACATACCAAAATTACCATAAATCATGTAATAAAAAGACACGGTAGATTTCATACTTGTCGACAGGCCGATTCCGGACCGGCACGGGCGGGAAAAGCACTCGTTTCACATTTCAAATTGTGAGCATAACAACATACGAGATGATAGAGCTCAATTATAAAACCCGACCAGCATTTAAATCTTATAAAACCCGACCAGAAAACCCGACCAGCATTTAAATCAGTAACCAGGTGCGGTCCGACGTTTAATAGCCGGGCCGGGCAAAAATCGTTGGCCCGGATCAAAGTACAGCTTTCGAAACC</canonical>
            <polymorphic>ATGACAAATATTATATCAGTTGAAATTTTAATGATGTCTGAAGTAGGAACGGTGAGAATTCCAAATGCAAACGTTAAAAACGGGGCTTTGCAACGGATCTTCAACTGTTAACCATCTATCAAAGCAATCCTCGTACTAAAGCTTTCCAGTGGAAAGGTAATATTCCTTTCCTAATTTACAGGTCCCATCATGCAATGCTTGTAAGATGTTCTTCCGAAGAGTGGTTCTCAACAATGTCACTTATCAGTGCCGTGATTTGAGACGGTGCTATTGGAGAGTTGGTGAGTTATGGTTTACAGTAACTTTCACTTACTGTATTTGTTCTAATATTATAGAAGCCCATCCAAACCGACACTCTGAGCACAATTATCTCGATTCCAGTAAACGATATCAACATTTTCTCAATTGACAAATTATTTATCATAGTGTCGCCTATATTTTATCAGTTCTTAAATTTCCGACATCTTTCACAGAAATCGAGATAATTAAGATCGAAATTKACGGTTTGGTTAAGCTTCTACATCTACGTTTACCATGGTCCAGCAGGTTGGGGGGGGGGGGGGGGGGTTAGCGAGAGAAGGATTTTAATTAAATTGTCTTCAGGTCTGCATAATATGAATTACCGAGCCTTGTGATTCATCAACTCACAGCATGGAGCAAGAGCTTGATAGTTTTTTTTTACTTTGCTTAGCTTCATACTACATACCAAAATTACCATAAATCATGTAATAAAAAGACACGGTAGATTTCATACTTGTCGACAGGCCGATTCCGGACCGGCACGGGCGGGAAAAGCACTCGTTTCACATTTCAAATTGTGAGCATAACAACATACGAGATGATAGAGCTCAATTATAAAACCCGACCAGCATTTAAATCTTATAAAACCCGACCAGAAAACCCGACCAGCATTTAAATCAGTAACCAGGTGCGGTCCGACGTTTAATAGCCGGGCCGGGCAAAAATCGTTGGCCCGGATCAAAGTACAGCTTTCGAAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTATGGTTTACAGTAACTTTCACTT</pcr_primer_p1>
		<pcr_primer_p2>ATTAAAATCCTTCTCTCGCTAAC</pcr_primer_p2>
		<pcr_amplicon_size>304</pcr_amplicon_size>
		<canonical_amplicon>GTTATGGTTTACAGTAACTTTCACTTACTGTATTTGTTCTAATATTATAGAAGCCCATCCAAACCGACACTCTGAGCACAATTATCTCGATTCCAGTAAACGATATCAACATTTTCTCAATTGACAAATTATTTATCATAGTGTCGCCTATATTTTATCAGTTCTTAAATTTCCGACATCTTTCACAGAAATCGAGATAATTAAGATCGAAATTGACGGTTTGGTTAAGCTTCTACATCTACGTTTACCATGGTCCAGCAGGTTGGGGGGGGGGGGGGGGGGTTAGCGAGAGAAGGATTTTAAT</canonical_amplicon>
		<polymorphic_amplicon>GTTATGGTTTACAGTAACTTTCACTTACTGTATTTGTTCTAATATTATAGAAGCCCATCCAAACCGACACTCTGAGCACAATTATCTCGATTCCAGTAAACGATATCAACATTTTCTCAATTGACAAATTATTTATCATAGTGTCGCCTATATTTTATCAGTTCTTAAATTTCCGACATCTTTCACAGAAATCGAGATAATTAAGATCGAAATTKACGGTTTGGTTAAGCTTCTACATCTACGTTTACCATGGTCCAGCAGGTTGGGGGGGGGGGGGGGGGGTTAGCGAGAGAAGGATTTTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4870</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>45261</contig_pos>
        <strand>+</strand>
        <context>GGATAAGGAA[A/T]TCATGATCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTGAATTGTATTGATTTCATGCATCTTCTCACCTCAGAGGATAAGGAA</left_flank>
        <right_flank>TCATGATCAAGAGCTTTGCCATGAATTCGTATCTTCTTTCATCTGCATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATTTTCAGAGTCATGCAGAGAACGCCCAAAATGCCGTGCCTGTCGATTTCAAAGATGCCTGGACGTCGGTATGAAGTACACTCCAGGAGAATGCTCTGAAGATGCATCAAAGCTTCCGATAGCAAAGTTCACTGATCAATCACCCATTCCACCAGTGGTCCTGAGCCCTGTCGACGTGTTGACCAACATGATTCAAGGATTACTGTACTTGGATTCACACCGGTTGAGAAGTTTCACGCTAATGCGCAGTGATCAGGATCCGACGATTGATGAACTCATCAATGGGACCTGTAGGGGATTCTCAGCTTTGAGAATTAGCGATGTATGGTTTTTTTGGAATTAAAAAAAAACTACAAGTAAAATTCTAGGGACCCTCCTCACCACCACCCTGCAATGGATTGATTCTATCTCAATGGTCATTCTTTGGAGTCTGGACTTCTGTGGAGTTTTTGAATTGTATTGATTTCATGCATCTTCTCACCTCAGAGGATAAGGAATTCATGATCAAGAGCTTTGCCATGAATTCGTATCTTCTTTCATCTGCATTCTTCTCGGCTAGCTATAACAGTGACCTTCTACTGAATCCAGATGGTACCGAATTGTACTCATGTAGAATTAAGAAGTGAATCTGGATTCGAAAATTTGAAAACTTGAACACAGCCAATTTTCAGTATGCCAGAACTTTCCGAGGACATGGTGGAGCGTGTCCAGAAGCTGCTGGTGGCTAAATTGAAGAATGTTCGTATAACCCAAGAAGAATACATTCTTATGACTATGATTCTATTCTGTACTCCGAGTACTGTACTCCTTCCGATATTTTCCCTAAATCCCATATTCCAGAACTCCCTGGCATCTCGAGATCCGGATTAGAAATTGTCTCCGAGCAACAAAGAAAGTACAGTAAGGCACTTATGGACTACTGTAGATTTACGCGTCACGATATGGGACCTCTCCGGTTCCAGGAGCTCATTTCCGTTGGTACGGTGCTGGCGAAATGT</canonical>
            <polymorphic>CGATTTTCAGAGTCATGCAGAGAACGCCCAAAATGCCGTGCCTGTCGATTTCAAAGATGCCTGGACGTCGGTATGAAGTACACTCCAGGAGAATGCTCTGAAGATGCATCAAAGCTTCCGATAGCAAAGTTCACTGATCAATCACCCATTCCACCAGTGGTCCTGAGCCCTGTCGACGTGTTGACCAACATGATTCAAGGATTACTGTACTTGGATTCACACCGGTTGAGAAGTTTCACGCTAATGCGCAGTGATCAGGATCCGACGATTGATGAACTCATCAATGGGACCTGTAGGGGATTCTCAGCTTTGAGAATTAGCGATGTATGGTTTTTTTGGAATTAAAAAAAAACTACAAGTAAAATTCTAGGGACCCTCCTCACCACCACCCTGCAATGGATTGATTCTATCTCAATGGTCATTCTTTGGAGTCTGGACTTCTGTGGAGTTTTTGAATTGTATTGATTTCATGCATCTTCTCACCTCAGAGGATAAGGAAWTCATGATCAAGAGCTTTGCCATGAATTCGTATCTTCTTTCATCTGCATTCTTCTCGGCTAGCTATAACAGTGACCTTCTACTGAATCCAGATGGTACCGAATTGTACTCATGTAGAATTAAGAAGTGAATCTGGATTCGAAAATTTGAAAACTTGAACACAGCCAATTTTCAGTATGCCAGAACTTTCCGAGGACATGGTGGAGCGTGTCCAGAAGCTGCTGGTGGCTAAATTGAAGAATGTTCGTATAACCCAAGAAGAATACATTCTTATGACTATGATTCTATTCTGTACTCCGAGTACTGTACTCCTTCCGATATTTTCCCTAAATCCCATATTCCAGAACTCCCTGGCATCTCGAGATCCGGATTAGAAATTGTCTCCGAGCAACAAAGAAAGTACAGTAAGGCACTTATGGACTACTGTAGATTTACGCGTCACGATATGGGACCTCTCCGGTTCCAGGAGCTCATTTCCGTTGGTACGGTGCTGGCGAAATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>362 359 135 118 26</canonical_bands>
                <polymorphic_bands>362 359 161 118</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>497 477 26</canonical_bands>
                <polymorphic_bands>523 477</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>314 144 127 92 76 65 43 26 26 25 23 23 16</canonical_bands>
                <polymorphic_bands>314 144 127 92 76 69 65 26 25 23 23 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGTGGAGTTTTTGAATTGTAT</pcr_primer_p1>
		<pcr_primer_p2>AAAGTTCTGGCATACTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTGTGGAGTTTTTGAATTGTATTGATTTCATGCATCTTCTCACCTCAGAGGATAAGGAATTCATGATCAAGAGCTTTGCCATGAATTCGTATCTTCTTTCATCTGCATTCTTCTCGGCTAGCTATAACAGTGACCTTCTACTGAATCCAGATGGTACCGAATTGTACTCATGTAGAATTAAGAAGTGAATCTGGATTCGAAAATTTGAAAACTTGAACACAGCCAATTTTCAGTATGCCAGAACTTT</canonical_amplicon>
		<polymorphic_amplicon>TCTGTGGAGTTTTTGAATTGTATTGATTTCATGCATCTTCTCACCTCAGAGGATAAGGAAWTCATGATCAAGAGCTTTGCCATGAATTCGTATCTTCTTTCATCTGCATTCTTCTCGGCTAGCTATAACAGTGACCTTCTACTGAATCCAGATGGTACCGAATTGTACTCATGTAGAATTAAGAAGTGAATCTGGATTCGAAAATTTGAAAACTTGAACACAGCCAATTTTCAGTATGCCAGAACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4871</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>45158</contig_pos>
        <strand>+</strand>
        <context>CACCCTGCAA[C/T]GGATTGATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAACTACAAGTAAAATTCTAGGGACCCTCCTCACCACCACCCTGCAA</left_flank>
        <right_flank>GGATTGATTCTATCTCAATGGTCATTCTTTGGAGTCTGGACTTCTGTGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAACTGAGCTACGTGGTCGCAAACTCGACTGACAACAAATGCCGCAACCACAAGAAACCCCCCAGGACTTTCTTGTCTCCCCACCTTCTTCTGAATTTTTTCGATTTTCAGAGTCATGCAGAGAACGCCCAAAATGCCGTGCCTGTCGATTTCAAAGATGCCTGGACGTCGGTATGAAGTACACTCCAGGAGAATGCTCTGAAGATGCATCAAAGCTTCCGATAGCAAAGTTCACTGATCAATCACCCATTCCACCAGTGGTCCTGAGCCCTGTCGACGTGTTGACCAACATGATTCAAGGATTACTGTACTTGGATTCACACCGGTTGAGAAGTTTCACGCTAATGCGCAGTGATCAGGATCCGACGATTGATGAACTCATCAATGGGACCTGTAGGGGATTCTCAGCTTTGAGAATTAGCGATGTATGGTTTTTTTGGAATTAAAAAAAAACTACAAGTAAAATTCTAGGGACCCTCCTCACCACCACCCTGCAATGGATTGATTCTATCTCAATGGTCATTCTTTGGAGTCTGGACTTCTGTGGAGTTTTTGAATTGTATTGATTTCATGCATCTTCTCACCTCAGAGGATAAGGAATTCATGATCAAGAGCTTTGCCATGAATTCGTATCTTCTTTCATCTGCATTCTTCTCGGCTAGCTATAACAGTGACCTTCTACTGAATCCAGATGGTACCGAATTGTACTCATGTAGAATTAAGAAGTGAATCTGGATTCGAAAATTTGAAAACTTGAACACAGCCAATTTTCAGTATGCCAGAACTTTCCGAGGACATGGTGGAGCGTGTCCAGAAGCTGCTGGTGGCTAAATTGAAGAATGTTCGTATAACCCAAGAAGAATACATTCTTATGACTATGATTCTATTCTGTACTCCGAGTACTGTACTCCTTCCGATATTTTCCCTAAATCCCATATTCCAGAACTCCCTGGCATCTCGAGATCCGGATTAGAAATTGTCTCCGAGCAACAAAGAAA</canonical>
            <polymorphic>ACCAACTGAGCTACGTGGTCGCAAACTCGACTGACAACAAATGCCGCAACCACAAGAAACCCCCCAGGACTTTCTTGTCTCCCCACCTTCTTCTGAATTTTTTCGATTTTCAGAGTCATGCAGAGAACGCCCAAAATGCCGTGCCTGTCGATTTCAAAGATGCCTGGACGTCGGTATGAAGTACACTCCAGGAGAATGCTCTGAAGATGCATCAAAGCTTCCGATAGCAAAGTTCACTGATCAATCACCCATTCCACCAGTGGTCCTGAGCCCTGTCGACGTGTTGACCAACATGATTCAAGGATTACTGTACTTGGATTCACACCGGTTGAGAAGTTTCACGCTAATGCGCAGTGATCAGGATCCGACGATTGATGAACTCATCAATGGGACCTGTAGGGGATTCTCAGCTTTGAGAATTAGCGATGTATGGTTTTTTTGGAATTAAAAAAAAACTACAAGTAAAATTCTAGGGACCCTCCTCACCACCACCCTGCAAYGGATTGATTCTATCTCAATGGTCATTCTTTGGAGTCTGGACTTCTGTGGAGTTTTTGAATTGTATTGATTTCATGCATCTTCTCACCTCAGAGGATAAGGAATTCATGATCAAGAGCTTTGCCATGAATTCGTATCTTCTTTCATCTGCATTCTTCTCGGCTAGCTATAACAGTGACCTTCTACTGAATCCAGATGGTACCGAATTGTACTCATGTAGAATTAAGAAGTGAATCTGGATTCGAAAATTTGAAAACTTGAACACAGCCAATTTTCAGTATGCCAGAACTTTCCGAGGACATGGTGGAGCGTGTCCAGAAGCTGCTGGTGGCTAAATTGAAGAATGTTCGTATAACCCAAGAAGAATACATTCTTATGACTATGATTCTATTCTGTACTCCGAGTACTGTACTCCTTCCGATATTTTCCCTAAATCCCATATTCCAGAACTCCCTGGCATCTCGAGATCCGGATTAGAAATTGTCTCCGAGCAACAAAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTTGAGAATTAGCGATGTAT</pcr_primer_p1>
		<pcr_primer_p2>AAGAATGCAGATGAAAGAAGATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GCTTTGAGAATTAGCGATGTATGGTTTTTTTGGAATTAAAAAAAAACTACAAGTAAAATTCTAGGGACCCTCCTCACCACCACCCTGCAATGGATTGATTCTATCTCAATGGTCATTCTTTGGAGTCTGGACTTCTGTGGAGTTTTTGAATTGTATTGATTTCATGCATCTTCTCACCTCAGAGGATAAGGAATTCATGATCAAGAGCTTTGCCATGAATTCGTATCTTCTTTCATCTGCATTCTT</canonical_amplicon>
		<polymorphic_amplicon>GCTTTGAGAATTAGCGATGTATGGTTTTTTTGGAATTAAAAAAAAACTACAAGTAAAATTCTAGGGACCCTCCTCACCACCACCCTGCAAYGGATTGATTCTATCTCAATGGTCATTCTTTGGAGTCTGGACTTCTGTGGAGTTTTTGAATTGTATTGATTTCATGCATCTTCTCACCTCAGAGGATAAGGAATTCATGATCAAGAGCTTTGCCATGAATTCGTATCTTCTTTCATCTGCATTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4872</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>44948</contig_pos>
        <strand>+</strand>
        <context>CGTGTTGACC[A/G]ACATGATTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCAATCACCCATTCCACCAGTGGTCCTGAGCCCTGTCGACGTGTTGACC</left_flank>
        <right_flank>ACATGATTCAAGGATTACTGTACTTGGATTCACACCGGTTGAGAAGTTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGATATTAACTAGAGTGCTTTATAATGTGCGTCAGCTGAGAATTTGAATGGAAGCGTGGAACGAGAAGGGAAGAGCAATGAAAATAGGTGGAAACTGGATTAGGAAATTCAAAAATGAATTGAATTCTACTTTTCAAAAAGGTAGACATGATAAAACGCCTCTGATGGAGTTGAACTTCTGAGCAAGTTTTCATGGTGACCTCACCGCTACCAACTGAGCTACGTGGTCGCAAACTCGACTGACAACAAATGCCGCAACCACAAGAAACCCCCCAGGACTTTCTTGTCTCCCCACCTTCTTCTGAATTTTTTCGATTTTCAGAGTCATGCAGAGAACGCCCAAAATGCCGTGCCTGTCGATTTCAAAGATGCCTGGACGTCGGTATGAAGTACACTCCAGGAGAATGCTCTGAAGATGCATCAAAGCTTCCGATAGCAAAGTTCACTGATCAATCACCCATTCCACCAGTGGTCCTGAGCCCTGTCGACGTGTTGACCAACATGATTCAAGGATTACTGTACTTGGATTCACACCGGTTGAGAAGTTTCACGCTAATGCGCAGTGATCAGGATCCGACGATTGATGAACTCATCAATGGGACCTGTAGGGGATTCTCAGCTTTGAGAATTAGCGATGTATGGTTTTTTTGGAATTAAAAAAAAACTACAAGTAAAATTCTAGGGACCCTCCTCACCACCACCCTGCAATGGATTGATTCTATCTCAATGGTCATTCTTTGGAGTCTGGACTTCTGTGGAGTTTTTGAATTGTATTGATTTCATGCATCTTCTCACCTCAGAGGATAAGGAATTCATGATCAAGAGCTTTGCCATGAATTCGTATCTTCTTTCATCTGCATTCTTCTCGGCTAGCTATAACAGTGACCTTCTACTGAATCCAGATGGTACCGAATTGTACTCATGTAGAATTAAGAAGTGAATCTGGATTCGAAAATTTGAAAACTTGAACACAGCCAATTTTCAGTATGCCAGAACTTT</canonical>
            <polymorphic>TGGATATTAACTAGAGTGCTTTATAATGTGCGTCAGCTGAGAATTTGAATGGAAGCGTGGAACGAGAAGGGAAGAGCAATGAAAATAGGTGGAAACTGGATTAGGAAATTCAAAAATGAATTGAATTCTACTTTTCAAAAAGGTAGACATGATAAAACGCCTCTGATGGAGTTGAACTTCTGAGCAAGTTTTCATGGTGACCTCACCGCTACCAACTGAGCTACGTGGTCGCAAACTCGACTGACAACAAATGCCGCAACCACAAGAAACCCCCCAGGACTTTCTTGTCTCCCCACCTTCTTCTGAATTTTTTCGATTTTCAGAGTCATGCAGAGAACGCCCAAAATGCCGTGCCTGTCGATTTCAAAGATGCCTGGACGTCGGTATGAAGTACACTCCAGGAGAATGCTCTGAAGATGCATCAAAGCTTCCGATAGCAAAGTTCACTGATCAATCACCCATTCCACCAGTGGTCCTGAGCCCTGTCGACGTGTTGACCRACATGATTCAAGGATTACTGTACTTGGATTCACACCGGTTGAGAAGTTTCACGCTAATGCGCAGTGATCAGGATCCGACGATTGATGAACTCATCAATGGGACCTGTAGGGGATTCTCAGCTTTGAGAATTAGCGATGTATGGTTTTTTTGGAATTAAAAAAAAACTACAAGTAAAATTCTAGGGACCCTCCTCACCACCACCCTGCAATGGATTGATTCTATCTCAATGGTCATTCTTTGGAGTCTGGACTTCTGTGGAGTTTTTGAATTGTATTGATTTCATGCATCTTCTCACCTCAGAGGATAAGGAATTCATGATCAAGAGCTTTGCCATGAATTCGTATCTTCTTTCATCTGCATTCTTCTCGGCTAGCTATAACAGTGACCTTCTACTGAATCCAGATGGTACCGAATTGTACTCATGTAGAATTAAGAAGTGAATCTGGATTCGAAAATTTGAAAACTTGAACACAGCCAATTTTCAGTATGCCAGAACTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGAGAATGCTCTGAAGAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAACCATACATCGCTAATTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGGAGAATGCTCTGAAGATGCATCAAAGCTTCCGATAGCAAAGTTCACTGATCAATCACCCATTCCACCAGTGGTCCTGAGCCCTGTCGACGTGTTGACCAACATGATTCAAGGATTACTGTACTTGGATTCACACCGGTTGAGAAGTTTCACGCTAATGCGCAGTGATCAGGATCCGACGATTGATGAACTCATCAATGGGACCTGTAGGGGATTCTCAGCTTTGAGAATTAGCGATGTATGGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CAGGAGAATGCTCTGAAGATGCATCAAAGCTTCCGATAGCAAAGTTCACTGATCAATCACCCATTCCACCAGTGGTCCTGAGCCCTGTCGACGTGTTGACCRACATGATTCAAGGATTACTGTACTTGGATTCACACCGGTTGAGAAGTTTCACGCTAATGCGCAGTGATCAGGATCCGACGATTGATGAACTCATCAATGGGACCTGTAGGGGATTCTCAGCTTTGAGAATTAGCGATGTATGGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4873</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>44778</contig_pos>
        <strand>+</strand>
        <context>TCAGAGTCAT[C/G]CAGAGAACGC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTTTCTTGTCTCCCCACCTTCTTCTGAATTTTTTCGATTTTCAGAGTCAT</left_flank>
        <right_flank>CAGAGAACGCCCAAAATGCCGTGCCTGTCGATTTCAAAGATGCCTGGACG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTCTCCAACTTTGGATCAGCTATTCTATCTGTTTTTTCTCATTGAGCGTCACAAAAAAAAATCGGAGATTTCAAGCTTTTATGTAATATTAAATGCCGATTATCTGTTAAAATGAGACTCAGTCTGCAGGGAAATTACAGGAGGGTGGAGATTGAGAGAGCTTAATCATGGATATTAACTAGAGTGCTTTATAATGTGCGTCAGCTGAGAATTTGAATGGAAGCGTGGAACGAGAAGGGAAGAGCAATGAAAATAGGTGGAAACTGGATTAGGAAATTCAAAAATGAATTGAATTCTACTTTTCAAAAAGGTAGACATGATAAAACGCCTCTGATGGAGTTGAACTTCTGAGCAAGTTTTCATGGTGACCTCACCGCTACCAACTGAGCTACGTGGTCGCAAACTCGACTGACAACAAATGCCGCAACCACAAGAAACCCCCCAGGACTTTCTTGTCTCCCCACCTTCTTCTGAATTTTTTCGATTTTCAGAGTCATGCAGAGAACGCCCAAAATGCCGTGCCTGTCGATTTCAAAGATGCCTGGACGTCGGTATGAAGTACACTCCAGGAGAATGCTCTGAAGATGCATCAAAGCTTCCGATAGCAAAGTTCACTGATCAATCACCCATTCCACCAGTGGTCCTGAGCCCTGTCGACGTGTTGACCAACATGATTCAAGGATTACTGTACTTGGATTCACACCGGTTGAGAAGTTTCACGCTAATGCGCAGTGATCAGGATCCGACGATTGATGAACTCATCAATGGGACCTGTAGGGGATTCTCAGCTTTGAGAATTAGCGATGTATGGTTTTTTTGGAATTAAAAAAAAACTACAAGTAAAATTCTAGGGACCCTCCTCACCACCACCCTGCAATGGATTGATTCTATCTCAATGGTCATTCTTTGGAGTCTGGACTTCTGTGGAGTTTTTGAATTGTATTGATTTCATGCATCTTCTCACCTCAGAGGATAAGGAATTCATGATCAAGAGCTTT</canonical>
            <polymorphic>CGTTCTCCAACTTTGGATCAGCTATTCTATCTGTTTTTTCTCATTGAGCGTCACAAAAAAAAATCGGAGATTTCAAGCTTTTATGTAATATTAAATGCCGATTATCTGTTAAAATGAGACTCAGTCTGCAGGGAAATTACAGGAGGGTGGAGATTGAGAGAGCTTAATCATGGATATTAACTAGAGTGCTTTATAATGTGCGTCAGCTGAGAATTTGAATGGAAGCGTGGAACGAGAAGGGAAGAGCAATGAAAATAGGTGGAAACTGGATTAGGAAATTCAAAAATGAATTGAATTCTACTTTTCAAAAAGGTAGACATGATAAAACGCCTCTGATGGAGTTGAACTTCTGAGCAAGTTTTCATGGTGACCTCACCGCTACCAACTGAGCTACGTGGTCGCAAACTCGACTGACAACAAATGCCGCAACCACAAGAAACCCCCCAGGACTTTCTTGTCTCCCCACCTTCTTCTGAATTTTTTCGATTTTCAGAGTCATSCAGAGAACGCCCAAAATGCCGTGCCTGTCGATTTCAAAGATGCCTGGACGTCGGTATGAAGTACACTCCAGGAGAATGCTCTGAAGATGCATCAAAGCTTCCGATAGCAAAGTTCACTGATCAATCACCCATTCCACCAGTGGTCCTGAGCCCTGTCGACGTGTTGACCAACATGATTCAAGGATTACTGTACTTGGATTCACACCGGTTGAGAAGTTTCACGCTAATGCGCAGTGATCAGGATCCGACGATTGATGAACTCATCAATGGGACCTGTAGGGGATTCTCAGCTTTGAGAATTAGCGATGTATGGTTTTTTTGGAATTAAAAAAAAACTACAAGTAAAATTCTAGGGACCCTCCTCACCACCACCCTGCAATGGATTGATTCTATCTCAATGGTCATTCTTTGGAGTCTGGACTTCTGTGGAGTTTTTGAATTGTATTGATTTCATGCATCTTCTCACCTCAGAGGATAAGGAATTCATGATCAAGAGCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>515 485</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>280 175 169 149 134 45 33 15</canonical_bands>
                <polymorphic_bands>309 280 169 149 45 33 15</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>372 287 128 89 79 45</canonical_bands>
                <polymorphic_bands>461 287 128 79 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGATGGAGTTGAACTTCTG</pcr_primer_p1>
		<pcr_primer_p2>TTCTCCTGGAGTGTACTTCATAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TCTGATGGAGTTGAACTTCTGAGCAAGTTTTCATGGTGACCTCACCGCTACCAACTGAGCTACGTGGTCGCAAACTCGACTGACAACAAATGCCGCAACCACAAGAAACCCCCCAGGACTTTCTTGTCTCCCCACCTTCTTCTGAATTTTTTCGATTTTCAGAGTCATGCAGAGAACGCCCAAAATGCCGTGCCTGTCGATTTCAAAGATGCCTGGACGTCGGTATGAAGTACACTCCAGGAGAA</canonical_amplicon>
		<polymorphic_amplicon>TCTGATGGAGTTGAACTTCTGAGCAAGTTTTCATGGTGACCTCACCGCTACCAACTGAGCTACGTGGTCGCAAACTCGACTGACAACAAATGCCGCAACCACAAGAAACCCCCCAGGACTTTCTTGTCTCCCCACCTTCTTCTGAATTTTTTCGATTTTCAGAGTCATSCAGAGAACGCCCAAAATGCCGTGCCTGTCGATTTCAAAGATGCCTGGACGTCGGTATGAAGTACACTCCAGGAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4874</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>55596</contig_pos>
        <strand>+</strand>
        <context>AATTCATTGT[A/C]TTCCTCTTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CACAATTTCAATCTTCGGCCCTCTTCAAATGCTGAATTGAAATTCATTGT</left_flank>
        <right_flank>TTCCTCTTATTTTTTTTCCTCCTTTTCTCATTTTTGCTCTTTCCATTACA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAGGTTTAGGCATTCTGTGTTAGTTCAGAGATTAGCGTAATTTCTTTATTCAGAATGCCAAACAAACCGTCAACTTTGAGCTCAGATATCTCATTTCCCGTAAAAGATATCAAAAAATGCCCAAGTCCTAAAATGTTTATCATAATATATAAAAAACATTTTGTCAGTTGACCATTTTTTGATATCTTTTACAGAAACTGAGATAAAATGGCTCAAAGTAAAACCAATTAGGCTACGCGGTGGTAAGAGTCGGCGACCGCGTAGCTCAGTCGGTAGCGGTGCGACAATCCTGATTTTTGGCCCTGTAGTACGTCTTCTAAAGAACTTCCACCTGCTACCTGGAGCTTCTTAAAATCCCCAATTTCTGGACCCCTAACGATATTTTCTTTCACACTTTAATGCATTTCCCCTTTTCCTAAATAACTCATTTCCTGCCATTGAGAAAACCACAATTTCAATCTTCGGCCCTCTTCAAATGCTGAATTGAAATTCATTGTCTTCCTCTTATTTTTTTTCCTCCTTTTCTCATTTTTGCTCTTTCCATTACAAATCTCTGATCTCTCATCTTATCAGATACCAAACCCAAAAAAAATGGACGTTCTTCGTCGAATTATGCCCCGAAAAATGAAACGTGATCAGTATTCATTTGAGCTGCTGAAAAGCAGTTCGAATATAGAATTATCTACTGGAGTGGGTCCGGGCACTCCGTTACCCAGAAATTTTTCCCATTATGACAGTATACGTATCGCGCCATCTTCACAGTCAACGGTGGTGAAAAAACAGCCAGTTGTGCAGGTAAGAAACTTGAAATTTTGGAGTGTTAGTCATTATTGAACGTCTATACACACTCCTTGCACTTCGAGCTCAATTATCTCGGTTCCTATGAAAGACATCGAAAAACTGATAAAATATTGGCGAGATTATGGTAAACACATTTTCAGTCGACAGATTTTCGATATCTTCTGTAGAAACCGAGATAAATTGAGTTCAAACTGTAA</canonical>
            <polymorphic>TCAAGGTTTAGGCATTCTGTGTTAGTTCAGAGATTAGCGTAATTTCTTTATTCAGAATGCCAAACAAACCGTCAACTTTGAGCTCAGATATCTCATTTCCCGTAAAAGATATCAAAAAATGCCCAAGTCCTAAAATGTTTATCATAATATATAAAAAACATTTTGTCAGTTGACCATTTTTTGATATCTTTTACAGAAACTGAGATAAAATGGCTCAAAGTAAAACCAATTAGGCTACGCGGTGGTAAGAGTCGGCGACCGCGTAGCTCAGTCGGTAGCGGTGCGACAATCCTGATTTTTGGCCCTGTAGTACGTCTTCTAAAGAACTTCCACCTGCTACCTGGAGCTTCTTAAAATCCCCAATTTCTGGACCCCTAACGATATTTTCTTTCACACTTTAATGCATTTCCCCTTTTCCTAAATAACTCATTTCCTGCCATTGAGAAAACCACAATTTCAATCTTCGGCCCTCTTCAAATGCTGAATTGAAATTCATTGTMTTCCTCTTATTTTTTTTCCTCCTTTTCTCATTTTTGCTCTTTCCATTACAAATCTCTGATCTCTCATCTTATCAGATACCAAACCCAAAAAAAATGGACGTTCTTCGTCGAATTATGCCCCGAAAAATGAAACGTGATCAGTATTCATTTGAGCTGCTGAAAAGCAGTTCGAATATAGAATTATCTACTGGAGTGGGTCCGGGCACTCCGTTACCCAGAAATTTTTCCCATTATGACAGTATACGTATCGCGCCATCTTCACAGTCAACGGTGGTGAAAAAACAGCCAGTTGTGCAGGTAAGAAACTTGAAATTTTGGAGTGTTAGTCATTATTGAACGTCTATACACACTCCTTGCACTTCGAGCTCAATTATCTCGGTTCCTATGAAAGACATCGAAAAACTGATAAAATATTGGCGAGATTATGGTAAACACATTTTCAGTCGACAGATTTTCGATATCTTCTGTAGAAACCGAGATAAATTGAGTTCAAACTGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACGTCTTCTAAAGAACTTCCAC</pcr_primer_p1>
		<pcr_primer_p2>TCAGAGATTTGTAATGGAAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TACGTCTTCTAAAGAACTTCCACCTGCTACCTGGAGCTTCTTAAAATCCCCAATTTCTGGACCCCTAACGATATTTTCTTTCACACTTTAATGCATTTCCCCTTTTCCTAAATAACTCATTTCCTGCCATTGAGAAAACCACAATTTCAATCTTCGGCCCTCTTCAAATGCTGAATTGAAATTCATTGTCTTCCTCTTATTTTTTTTCCTCCTTTTCTCATTTTTGCTCTTTCCATTACAAATCTCTGA</canonical_amplicon>
		<polymorphic_amplicon>TACGTCTTCTAAAGAACTTCCACCTGCTACCTGGAGCTTCTTAAAATCCCCAATTTCTGGACCCCTAACGATATTTTCTTTCACACTTTAATGCATTTCCCCTTTTCCTAAATAACTCATTTCCTGCCATTGAGAAAACCACAATTTCAATCTTCGGCCCTCTTCAAATGCTGAATTGAAATTCATTGTMTTCCTCTTATTTTTTTTCCTCCTTTTCTCATTTTTGCTCTTTCCATTACAAATCTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4875</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>55710</contig_pos>
        <strand>+</strand>
        <context>TTCGTCGAAT[G/T]ATGCCCCGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCATCTTATCAGATACCAAACCCAAAAAAAATGGACGTTCTTCGTCGAAT</left_flank>
        <right_flank>ATGCCCCGAAAAATGAAACGTGATCAGTATTCATTTGAGCTGCTGAAAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATGCCCAAGTCCTAAAATGTTTATCATAATATATAAAAAACATTTTGTCAGTTGACCATTTTTTGATATCTTTTACAGAAACTGAGATAAAATGGCTCAAAGTAAAACCAATTAGGCTACGCGGTGGTAAGAGTCGGCGACCGCGTAGCTCAGTCGGTAGCGGTGCGACAATCCTGATTTTTGGCCCTGTAGTACGTCTTCTAAAGAACTTCCACCTGCTACCTGGAGCTTCTTAAAATCCCCAATTTCTGGACCCCTAACGATATTTTCTTTCACACTTTAATGCATTTCCCCTTTTCCTAAATAACTCATTTCCTGCCATTGAGAAAACCACAATTTCAATCTTCGGCCCTCTTCAAATGCTGAATTGAAATTCATTGTCTTCCTCTTATTTTTTTTCCTCCTTTTCTCATTTTTGCTCTTTCCATTACAAATCTCTGATCTCTCATCTTATCAGATACCAAACCCAAAAAAAATGGACGTTCTTCGTCGAATTATGCCCCGAAAAATGAAACGTGATCAGTATTCATTTGAGCTGCTGAAAAGCAGTTCGAATATAGAATTATCTACTGGAGTGGGTCCGGGCACTCCGTTACCCAGAAATTTTTCCCATTATGACAGTATACGTATCGCGCCATCTTCACAGTCAACGGTGGTGAAAAAACAGCCAGTTGTGCAGGTAAGAAACTTGAAATTTTGGAGTGTTAGTCATTATTGAACGTCTATACACACTCCTTGCACTTCGAGCTCAATTATCTCGGTTCCTATGAAAGACATCGAAAAACTGATAAAATATTGGCGAGATTATGGTAAACACATTTTCAGTCGACAGATTTTCGATATCTTCTGTAGAAACCGAGATAAATTGAGTTCAAACTGTAAGCATTCATGGTAAGCTAGAGTCCATATTGAGCCTTAAACTTTATAAATGAATATTTTGCATTAAAATGTAAAATGAATTGTAAAACTTATGTATCAGGCAACTATTACTCAGAA</canonical>
            <polymorphic>AAAAATGCCCAAGTCCTAAAATGTTTATCATAATATATAAAAAACATTTTGTCAGTTGACCATTTTTTGATATCTTTTACAGAAACTGAGATAAAATGGCTCAAAGTAAAACCAATTAGGCTACGCGGTGGTAAGAGTCGGCGACCGCGTAGCTCAGTCGGTAGCGGTGCGACAATCCTGATTTTTGGCCCTGTAGTACGTCTTCTAAAGAACTTCCACCTGCTACCTGGAGCTTCTTAAAATCCCCAATTTCTGGACCCCTAACGATATTTTCTTTCACACTTTAATGCATTTCCCCTTTTCCTAAATAACTCATTTCCTGCCATTGAGAAAACCACAATTTCAATCTTCGGCCCTCTTCAAATGCTGAATTGAAATTCATTGTCTTCCTCTTATTTTTTTTCCTCCTTTTCTCATTTTTGCTCTTTCCATTACAAATCTCTGATCTCTCATCTTATCAGATACCAAACCCAAAAAAAATGGACGTTCTTCGTCGAATKATGCCCCGAAAAATGAAACGTGATCAGTATTCATTTGAGCTGCTGAAAAGCAGTTCGAATATAGAATTATCTACTGGAGTGGGTCCGGGCACTCCGTTACCCAGAAATTTTTCCCATTATGACAGTATACGTATCGCGCCATCTTCACAGTCAACGGTGGTGAAAAAACAGCCAGTTGTGCAGGTAAGAAACTTGAAATTTTGGAGTGTTAGTCATTATTGAACGTCTATACACACTCCTTGCACTTCGAGCTCAATTATCTCGGTTCCTATGAAAGACATCGAAAAACTGATAAAATATTGGCGAGATTATGGTAAACACATTTTCAGTCGACAGATTTTCGATATCTTCTGTAGAAACCGAGATAAATTGAGTTCAAACTGTAAGCATTCATGGTAAGCTAGAGTCCATATTGAGCCTTAAACTTTATAAATGAATATTTTGCATTAAAATGTAAAATGAATTGTAAAACTTATGTATCAGGCAACTATTACTCAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>134 121 113 113 94 91 91 68 58 41 39 31 6</canonical_bands>
                <polymorphic_bands>189 134 113 113 94 91 91 58 41 39 31 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCCTCCTTTTCTCATTT</pcr_primer_p1>
		<pcr_primer_p2>CGCGATACGTATACTGTCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCCTCCTTTTCTCATTTTTGCTCTTTCCATTACAAATCTCTGATCTCTCATCTTATCAGATACCAAACCCAAAAAAAATGGACGTTCTTCGTCGAATTATGCCCCGAAAAATGAAACGTGATCAGTATTCATTTGAGCTGCTGAAAAGCAGTTCGAATATAGAATTATCTACTGGAGTGGGTCCGGGCACTCCGTTACCCAGAAATTTTTCCCATTATGACAGTATACGTATCGCG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCCTCCTTTTCTCATTTTTGCTCTTTCCATTACAAATCTCTGATCTCTCATCTTATCAGATACCAAACCCAAAAAAAATGGACGTTCTTCGTCGAATKATGCCCCGAAAAATGAAACGTGATCAGTATTCATTTGAGCTGCTGAAAAGCAGTTCGAATATAGAATTATCTACTGGAGTGGGTCCGGGCACTCCGTTACCCAGAAATTTTTCCCATTATGACAGTATACGTATCGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4876</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>55773</contig_pos>
        <strand>+</strand>
        <context>GTTCGAATAT[A/G]GAATTATCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGAAACGTGATCAGTATTCATTTGAGCTGCTGAAAAGCAGTTCGAATAT</left_flank>
        <right_flank>GAATTATCTACTGGAGTGGGTCCGGGCACTCCGTTACCCAGAAATTTTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGATATCTTTTACAGAAACTGAGATAAAATGGCTCAAAGTAAAACCAATTAGGCTACGCGGTGGTAAGAGTCGGCGACCGCGTAGCTCAGTCGGTAGCGGTGCGACAATCCTGATTTTTGGCCCTGTAGTACGTCTTCTAAAGAACTTCCACCTGCTACCTGGAGCTTCTTAAAATCCCCAATTTCTGGACCCCTAACGATATTTTCTTTCACACTTTAATGCATTTCCCCTTTTCCTAAATAACTCATTTCCTGCCATTGAGAAAACCACAATTTCAATCTTCGGCCCTCTTCAAATGCTGAATTGAAATTCATTGTCTTCCTCTTATTTTTTTTCCTCCTTTTCTCATTTTTGCTCTTTCCATTACAAATCTCTGATCTCTCATCTTATCAGATACCAAACCCAAAAAAAATGGACGTTCTTCGTCGAATTATGCCCCGAAAAATGAAACGTGATCAGTATTCATTTGAGCTGCTGAAAAGCAGTTCGAATATAGAATTATCTACTGGAGTGGGTCCGGGCACTCCGTTACCCAGAAATTTTTCCCATTATGACAGTATACGTATCGCGCCATCTTCACAGTCAACGGTGGTGAAAAAACAGCCAGTTGTGCAGGTAAGAAACTTGAAATTTTGGAGTGTTAGTCATTATTGAACGTCTATACACACTCCTTGCACTTCGAGCTCAATTATCTCGGTTCCTATGAAAGACATCGAAAAACTGATAAAATATTGGCGAGATTATGGTAAACACATTTTCAGTCGACAGATTTTCGATATCTTCTGTAGAAACCGAGATAAATTGAGTTCAAACTGTAAGCATTCATGGTAAGCTAGAGTCCATATTGAGCCTTAAACTTTATAAATGAATATTTTGCATTAAAATGTAAAATGAATTGTAAAACTTATGTATCAGGCAACTATTACTCAGAATTTGTATTATAAAAACTACAAAACATTGATAATGATTCATTTCCGAAGTTTTAAGCCCAATTT</canonical>
            <polymorphic>TTTTTGATATCTTTTACAGAAACTGAGATAAAATGGCTCAAAGTAAAACCAATTAGGCTACGCGGTGGTAAGAGTCGGCGACCGCGTAGCTCAGTCGGTAGCGGTGCGACAATCCTGATTTTTGGCCCTGTAGTACGTCTTCTAAAGAACTTCCACCTGCTACCTGGAGCTTCTTAAAATCCCCAATTTCTGGACCCCTAACGATATTTTCTTTCACACTTTAATGCATTTCCCCTTTTCCTAAATAACTCATTTCCTGCCATTGAGAAAACCACAATTTCAATCTTCGGCCCTCTTCAAATGCTGAATTGAAATTCATTGTCTTCCTCTTATTTTTTTTCCTCCTTTTCTCATTTTTGCTCTTTCCATTACAAATCTCTGATCTCTCATCTTATCAGATACCAAACCCAAAAAAAATGGACGTTCTTCGTCGAATTATGCCCCGAAAAATGAAACGTGATCAGTATTCATTTGAGCTGCTGAAAAGCAGTTCGAATATRGAATTATCTACTGGAGTGGGTCCGGGCACTCCGTTACCCAGAAATTTTTCCCATTATGACAGTATACGTATCGCGCCATCTTCACAGTCAACGGTGGTGAAAAAACAGCCAGTTGTGCAGGTAAGAAACTTGAAATTTTGGAGTGTTAGTCATTATTGAACGTCTATACACACTCCTTGCACTTCGAGCTCAATTATCTCGGTTCCTATGAAAGACATCGAAAAACTGATAAAATATTGGCGAGATTATGGTAAACACATTTTCAGTCGACAGATTTTCGATATCTTCTGTAGAAACCGAGATAAATTGAGTTCAAACTGTAAGCATTCATGGTAAGCTAGAGTCCATATTGAGCCTTAAACTTTATAAATGAATATTTTGCATTAAAATGTAAAATGAATTGTAAAACTTATGTATCAGGCAACTATTACTCAGAATTTGTATTATAAAAACTACAAAACATTGATAATGATTCATTTCCGAAGTTTTAAGCCCAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCAGATACCAAACCCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCAAAATTTCAAGTTTCTTACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATCAGATACCAAACCCAAAAAAAATGGACGTTCTTCGTCGAATTATGCCCCGAAAAATGAAACGTGATCAGTATTCATTTGAGCTGCTGAAAAGCAGTTCGAATATAGAATTATCTACTGGAGTGGGTCCGGGCACTCCGTTACCCAGAAATTTTTCCCATTATGACAGTATACGTATCGCGCCATCTTCACAGTCAACGGTGGTGAAAAAACAGCCAGTTGTGCAGGTAAGAAACTTGAAATTTTGG</canonical_amplicon>
		<polymorphic_amplicon>TATCAGATACCAAACCCAAAAAAAATGGACGTTCTTCGTCGAATTATGCCCCGAAAAATGAAACGTGATCAGTATTCATTTGAGCTGCTGAAAAGCAGTTCGAATATRGAATTATCTACTGGAGTGGGTCCGGGCACTCCGTTACCCAGAAATTTTTCCCATTATGACAGTATACGTATCGCGCCATCTTCACAGTCAACGGTGGTGAAAAAACAGCCAGTTGTGCAGGTAAGAAACTTGAAATTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4877</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>56977</contig_pos>
        <strand>+</strand>
        <context>GATCTCATTA[G/T]AATTCCATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATTTCAGCTCACATCAGCTCTTCTCCATTTTCAGAACTAGATCTCATTA</left_flank>
        <right_flank>AATTCCATTTTCTCTCTTCCAGCAAACTTCCCTTTCAATTATTTTATAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGTCTGTAATACTGTAAAACCTGCAATAGAAGGGCCCTCTGACTTTCAACTTTGAGCCAACTTATCTCGATTCCTGTGAAAGATATAAAAAATTACAACAACTGATAAATTGTTCACATGAAGTGAGATAATTGAGCGCAGATGTGACAGCGCGCTCTTCTATTATAGGTTTTACGGTTTTTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTATGAGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGTCACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTCATCTTCTGCCTATCCCACGATTTCAGCTCACATCAGCTCTTCTCCATTTTCAGAACTAGATCTCATTATAATTCCATTTTCTCTCTTCCAGCAAACTTCCCTTTCAATTATTTTATAATTTCCAGTAACTGCTCTTTTTGCTCATATTTTATGATGAGCGCTGAAAGTTTTCAACTCATTTCCAATTAATTTCTCTCAGCTCTCTGCTTCCATTTTTTGCATCCATTCGTTTTTTTTCTGTTTTGTCGGACACTGACATATTTATGTTGTCTCGTGTTGGCATATGGACAGGAGAGGCTTGGAGCAAAAAGACGCCAAAATTTTTCTTTCTTTTTCATTCGTCTGTTTTTTCGCAGAAAATGCTGAGAAGTACTCAGAATTTATTTCACCTGTCCCCGCCAAAGTCACATTTTCTAATTTTTTTTGTCCCTCAAAATTTCAGTTTCTCGGTTTTCTTGGGGCTTTTGTGATTTTTACGAAACTTTTTCTCTCTCCCCAAACATGTGACTTCCTCTTATTTTTTGGTCCGTTTTTTCGGAAATTCAATGCTTCTAAATCTGTCCTTTCTT</canonical>
            <polymorphic>TTCTGTCTGTAATACTGTAAAACCTGCAATAGAAGGGCCCTCTGACTTTCAACTTTGAGCCAACTTATCTCGATTCCTGTGAAAGATATAAAAAATTACAACAACTGATAAATTGTTCACATGAAGTGAGATAATTGAGCGCAGATGTGACAGCGCGCTCTTCTATTATAGGTTTTACGGTTTTTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTATGAGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGTCACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTCATCTTCTGCCTATCCCACGATTTCAGCTCACATCAGCTCTTCTCCATTTTCAGAACTAGATCTCATTAKAATTCCATTTTCTCTCTTCCAGCAAACTTCCCTTTCAATTATTTTATAATTTCCAGTAACTGCTCTTTTTGCTCATATTTTATGATGAGCGCTGAAAGTTTTCAACTCATTTCCAATTAATTTCTCTCAGCTCTCTGCTTCCATTTTTTGCATCCATTCGTTTTTTTTCTGTTTTGTCGGACACTGACATATTTATGTTGTCTCGTGTTGGCATATGGACAGGAGAGGCTTGGAGCAAAAAGACGCCAAAATTTTTCTTTCTTTTTCATTCGTCTGTTTTTTCGCAGAAAATGCTGAGAAGTACTCAGAATTTATTTCACCTGTCCCCGCCAAAGTCACATTTTCTAATTTTTTTTGTCCCTCAAAATTTCAGTTTCTCGGTTTTCTTGGGGCTTTTGTGATTTTTACGAAACTTTTTCTCTCTCCCCAAACATGTGACTTCCTCTTATTTTTTGGTCCGTTTTTTCGGAAATTCAATGCTTCTAAATCTGTCCTTTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>454 291 208 47</canonical_bands>
                <polymorphic_bands>454 338 208</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAGTTTTGTTTTAGATTTCA</pcr_primer_p1>
		<pcr_primer_p2>CTGAGAGAAATTAATTGGAAATG</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAGTTTTGTTTTAGATTTCACAATTCTTTCATCTTCTGCCTATCCCACGATTTCAGCTCACATCAGCTCTTCTCCATTTTCAGAACTAGATCTCATTATAATTCCATTTTCTCTCTTCCAGCAAACTTCCCTTTCAATTATTTTATAATTTCCAGTAACTGCTCTTTTTGCTCATATTTTATGATGAGCGCTGAAAGTTTTCAACTCATTTCCAATTAATTTCTCTCAG</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAGTTTTGTTTTAGATTTCACAATTCTTTCATCTTCTGCCTATCCCACGATTTCAGCTCACATCAGCTCTTCTCCATTTTCAGAACTAGATCTCATTAKAATTCCATTTTCTCTCTTCCAGCAAACTTCCCTTTCAATTATTTTATAATTTCCAGTAACTGCTCTTTTTGCTCATATTTTATGATGAGCGCTGAAAGTTTTCAACTCATTTCCAATTAATTTCTCTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4878</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>56925</contig_pos>
        <strand></strand>
        <context>TGCCTATCCC[A/G]RGATTTCAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGAGTTTTGTTTTAGATTTCACAATTCTTTCATCTTCTGCCTATCCC</left_flank>
        <right_flank>CGATTTCAGCTCACATCAGCTCTTCTCCATTTTCAGAACTAGATCTCATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTCTTTGTACTGTCATTTCCAATTATCAGATTTTCAGCTGTCTGTCTTTGTTCTGTCTGTAATACTGTAAAACCTGCAATAGAAGGGCCCTCTGACTTTCAACTTTGAGCCAACTTATCTCGATTCCTGTGAAAGATATAAAAAATTACAACAACTGATAAATTGTTCACATGAAGTGAGATAATTGAGCGCAGATGTGACAGCGCGCTCTTCTATTATAGGTTTTACGGTTTTTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTATGAGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGTCACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTCATCTTCTGCCTATCCCACGATTTCAGCTCACATCAGCTCTTCTCCATTTTCAGAACTAGATCTCATTATAATTCCATTTTCTCTCTTCCAGCAAACTTCCCTTTCAATTATTTTATAATTTCCAGTAACTGCTCTTTTTGCTCATATTTTATGATGAGCGCTGAAAGTTTTCAACTCATTTCCAATTAATTTCTCTCAGCTCTCTGCTTCCATTTTTTGCATCCATTCGTTTTTTTTCTGTTTTGTCGGACACTGACATATTTATGTTGTCTCGTGTTGGCATATGGACAGGAGAGGCTTGGAGCAAAAAGACGCCAAAATTTTTCTTTCTTTTTCATTCGTCTGTTTTTTCGCAGAAAATGCTGAGAAGTACTCAGAATTTATTTCACCTGTCCCCGCCAAAGTCACATTTTCTAATTTTTTTTGTCCCTCAAAATTTCAGTTTCTCGGTTTTCTTGGGGCTTTTGTGATTTTTACGAAACTTTTTCTCTCTCCCCAAACATGTGACTTCCTCTTA</canonical>
            <polymorphic>CTGTCTTTGTACTGTCATTTCCAATTATCAGATTTTCAGCTGTCTGTCTTTGTTCTGTCTGTAATACTGTAAAACCTGCAATAGAAGGGCCCTCTGACTTTCAACTTTGAGCCAACTTATCTCGATTCCTGTGAAAGATATAAAAAATTACAACAACTGATAAATTGTTCACATGAAGTGAGATAATTGAGCGCAGATGTGACAGCGCGCTCTTCTATTATAGGTTTTACGGTTTTTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTATGAGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGTCACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTCATCTTCTGCCTATCCCRCGATTTCAGCTCACATCAGCTCTTCTCCATTTTCAGAACTAGATCTCATTATAATTCCATTTTCTCTCTTCCAGCAAACTTCCCTTTCAATTATTTTATAATTTCCAGTAACTGCTCTTTTTGCTCATATTTTATGATGAGCGCTGAAAGTTTTCAACTCATTTCCAATTAATTTCTCTCAGCTCTCTGCTTCCATTTTTTGCATCCATTCGTTTTTTTTCTGTTTTGTCGGACACTGACATATTTATGTTGTCTCGTGTTGGCATATGGACAGGAGAGGCTTGGAGCAAAAAGACGCCAAAATTTTTCTTTCTTTTTCATTCGTCTGTTTTTTCGCAGAAAATGCTGAGAAGTACTCAGAATTTATTTCACCTGTCCCCGCCAAAGTCACATTTTCTAATTTTTTTTGTCCCTCAAAATTTCAGTTTCTCGGTTTTCTTGGGGCTTTTGTGATTTTTACGAAACTTTTTCTCTCTCCCCAAACATGTGACTTCCTCTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>222 133 116 112 103 62 53 38 37 27 24 21 19 13 11 9</canonical_bands>
                <polymorphic_bands>222 133 116 112 103 62 53 40 38 37 24 21 19 11 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAGAATAAAAGGAGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGCTGGAAGAGAGAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTATGAGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGTCACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTCATCTTCTGCCTATCCCACGATTTCAGCTCACATCAGCTCTTCTCCATTTTCAGAACTAGATCTCATTATAATTCCATTTTCTCTCTTCCAGCAA</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTATGAGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGTCACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTCATCTTCTGCCTATCCCRCGATTTCAGCTCACATCAGCTCTTCTCCATTTTCAGAACTAGATCTCATTATAATTCCATTTTCTCTCTTCCAGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4879</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>56849</contig_pos>
        <strand></strand>
        <context>TTTGTSACAG[A/G]TTTCAAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGTCACAG</left_flank>
        <right_flank>TTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCCTAGATTTTAAGGTTCTATTATTCATTTAAATTGGAAATTTCATTAATACCAGGGGTCAAATTCCTAGAAACCTGTCTTTGTACTGTCATTTCCAATTATCAGATTTTCAGCTGTCTGTCTTTGTTCTGTCTGTAATACTGTAAAACCTGCAATAGAAGGGCCCTCTGACTTTCAACTTTGAGCCAACTTATCTCGATTCCTGTGAAAGATATAAAAAATTACAACAACTGATAAATTGTTCACATGAAGTGAGATAATTGAGCGCAGATGTGACAGCGCGCTCTTCTATTATAGGTTTTACGGTTTTTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTATGAGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGTCACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTCATCTTCTGCCTATCCCACGATTTCAGCTCACATCAGCTCTTCTCCATTTTCAGAACTAGATCTCATTATAATTCCATTTTCTCTCTTCCAGCAAACTTCCCTTTCAATTATTTTATAATTTCCAGTAACTGCTCTTTTTGCTCATATTTTATGATGAGCGCTGAAAGTTTTCAACTCATTTCCAATTAATTTCTCTCAGCTCTCTGCTTCCATTTTTTGCATCCATTCGTTTTTTTTCTGTTTTGTCGGACACTGACATATTTATGTTGTCTCGTGTTGGCATATGGACAGGAGAGGCTTGGAGCAAAAAGACGCCAAAATTTTTCTTTCTTTTTCATTCGTCTGTTTTTTCGCAGAAAATGCTGAGAAGTACTCAGAATTTATTTCACCTGTCCCCGCCAAAGTCACATTTTCTAATTTTTTTTGTCCCTCAAAATTTCA</canonical>
            <polymorphic>ATTCCTAGATTTTAAGGTTCTATTATTCATTTAAATTGGAAATTTCATTAATACCAGGGGTCAAATTCCTAGAAACCTGTCTTTGTACTGTCATTTCCAATTATCAGATTTTCAGCTGTCTGTCTTTGTTCTGTCTGTAATACTGTAAAACCTGCAATAGAAGGGCCCTCTGACTTTCAACTTTGAGCCAACTTATCTCGATTCCTGTGAAAGATATAAAAAATTACAACAACTGATAAATTGTTCACATGAAGTGAGATAATTGAGCGCAGATGTGACAGCGCGCTCTTCTATTATAGGTTTTACGGTTTTTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTATGAGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGTCACAGRTTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTCATCTTCTGCCTATCCCACGATTTCAGCTCACATCAGCTCTTCTCCATTTTCAGAACTAGATCTCATTATAATTCCATTTTCTCTCTTCCAGCAAACTTCCCTTTCAATTATTTTATAATTTCCAGTAACTGCTCTTTTTGCTCATATTTTATGATGAGCGCTGAAAGTTTTCAACTCATTTCCAATTAATTTCTCTCAGCTCTCTGCTTCCATTTTTTGCATCCATTCGTTTTTTTTCTGTTTTGTCGGACACTGACATATTTATGTTGTCTCGTGTTGGCATATGGACAGGAGAGGCTTGGAGCAAAAAGACGCCAAAATTTTTCTTTCTTTTTCATTCGTCTGTTTTTTCGCAGAAAATGCTGAGAAGTACTCAGAATTTATTTCACCTGTCCCCGCCAAAGTCACATTTTCTAATTTTTTTTGTCCCTCAAAATTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGAAGAATAAAAGGAGATTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAGAATTGTGAAATCTAAAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTATGAGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGTCACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTATGAGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGTCACAGRTTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4880</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>56844</contig_pos>
        <strand></strand>
        <context>TGAATTTTGT[C/G]ACAGRTTTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTATGAGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGT</left_flank>
        <right_flank>ACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGAT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAATTCCTAGATTTTAAGGTTCTATTATTCATTTAAATTGGAAATTTCATTAATACCAGGGGTCAAATTCCTAGAAACCTGTCTTTGTACTGTCATTTCCAATTATCAGATTTTCAGCTGTCTGTCTTTGTTCTGTCTGTAATACTGTAAAACCTGCAATAGAAGGGCCCTCTGACTTTCAACTTTGAGCCAACTTATCTCGATTCCTGTGAAAGATATAAAAAATTACAACAACTGATAAATTGTTCACATGAAGTGAGATAATTGAGCGCAGATGTGACAGCGCGCTCTTCTATTATAGGTTTTACGGTTTTTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTATGAGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGTCACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTCATCTTCTGCCTATCCCACGATTTCAGCTCACATCAGCTCTTCTCCATTTTCAGAACTAGATCTCATTATAATTCCATTTTCTCTCTTCCAGCAAACTTCCCTTTCAATTATTTTATAATTTCCAGTAACTGCTCTTTTTGCTCATATTTTATGATGAGCGCTGAAAGTTTTCAACTCATTTCCAATTAATTTCTCTCAGCTCTCTGCTTCCATTTTTTGCATCCATTCGTTTTTTTTCTGTTTTGTCGGACACTGACATATTTATGTTGTCTCGTGTTGGCATATGGACAGGAGAGGCTTGGAGCAAAAAGACGCCAAAATTTTTCTTTCTTTTTCATTCGTCTGTTTTTTCGCAGAAAATGCTGAGAAGTACTCAGAATTTATTTCACCTGTCCCCGCCAAAGTCACATTTTCTAATTTTTTTTGTCCCTCAAAA</canonical>
            <polymorphic>TTTGAATTCCTAGATTTTAAGGTTCTATTATTCATTTAAATTGGAAATTTCATTAATACCAGGGGTCAAATTCCTAGAAACCTGTCTTTGTACTGTCATTTCCAATTATCAGATTTTCAGCTGTCTGTCTTTGTTCTGTCTGTAATACTGTAAAACCTGCAATAGAAGGGCCCTCTGACTTTCAACTTTGAGCCAACTTATCTCGATTCCTGTGAAAGATATAAAAAATTACAACAACTGATAAATTGTTCACATGAAGTGAGATAATTGAGCGCAGATGTGACAGCGCGCTCTTCTATTATAGGTTTTACGGTTTTTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTATGAGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGTSACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTCATCTTCTGCCTATCCCACGATTTCAGCTCACATCAGCTCTTCTCCATTTTCAGAACTAGATCTCATTATAATTCCATTTTCTCTCTTCCAGCAAACTTCCCTTTCAATTATTTTATAATTTCCAGTAACTGCTCTTTTTGCTCATATTTTATGATGAGCGCTGAAAGTTTTCAACTCATTTCCAATTAATTTCTCTCAGCTCTCTGCTTCCATTTTTTGCATCCATTCGTTTTTTTTCTGTTTTGTCGGACACTGACATATTTATGTTGTCTCGTGTTGGCATATGGACAGGAGAGGCTTGGAGCAAAAAGACGCCAAAATTTTTCTTTCTTTTTCATTCGTCTGTTTTTTCGCAGAAAATGCTGAGAAGTACTCAGAATTTATTTCACCTGTCCCCGCCAAAGTCACATTTTCTAATTTTTTTTGTCCCTCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>222 214 116 112 103 53 38 29 27 24 21 19 13 9</canonical_bands>
                <polymorphic_bands>222 214 169 112 103 38 29 27 24 21 19 13 9</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>470 279 218 33</canonical_bands>
                <polymorphic_bands>688 279 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGAAGAATAAAAGGAGATTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAGAATTGTGAAATCTAAAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTATGAGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGTCACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTATGAGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGTSACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4881</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>56829</contig_pos>
        <strand>+</strand>
        <context>CATTTCGTAA[A/G]ATCATGAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAATGATTGTAAATTATGAGGGAAAAATCAGCATCAATCATTTCGTAA</left_flank>
        <right_flank>ATCATGAATTTTGTCACAGATTTCAAAATTTATTTTTGGACAATTTTTTG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTATTTGTTCATTCTTTGAATTCCTAGATTTTAAGGTTCTATTATTCATTTAAATTGGAAATTTCATTAATACCAGGGGTCAAATTCCTAGAAACCTGTCTTTGTACTGTCATTTCCAATTATCAGATTTTCAGCTGTCTGTCTTTGTTCTGTCTGTAATACTGTAAAACCTGCAATAGAAGGGCCCTCTGACTTTCAACTTTGAGCCAACTTATCTCGATTCCTGTGAAAGATATAAAAAATTACAACAACTGATAAATTGTTCACATGAAGTGAGATAATTGAGCGCAGATGTGACAGCGCGCTCTTCTATTATAGGTTTTACGGTTTTTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTATGAGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGTCACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTCATCTTCTGCCTATCCCACGATTTCAGCTCACATCAGCTCTTCTCCATTTTCAGAACTAGATCTCATTATAATTCCATTTTCTCTCTTCCAGCAAACTTCCCTTTCAATTATTTTATAATTTCCAGTAACTGCTCTTTTTGCTCATATTTTATGATGAGCGCTGAAAGTTTTCAACTCATTTCCAATTAATTTCTCTCAGCTCTCTGCTTCCATTTTTTGCATCCATTCGTTTTTTTTCTGTTTTGTCGGACACTGACATATTTATGTTGTCTCGTGTTGGCATATGGACAGGAGAGGCTTGGAGCAAAAAGACGCCAAAATTTTTCTTTCTTTTTCATTCGTCTGTTTTTTCGCAGAAAATGCTGAGAAGTACTCAGAATTTATTTCACCTGTCCCCGCCAAAGTCACATTTTCTAATTTT</canonical>
            <polymorphic>TTTATTTGTTCATTCTTTGAATTCCTAGATTTTAAGGTTCTATTATTCATTTAAATTGGAAATTTCATTAATACCAGGGGTCAAATTCCTAGAAACCTGTCTTTGTACTGTCATTTCCAATTATCAGATTTTCAGCTGTCTGTCTTTGTTCTGTCTGTAATACTGTAAAACCTGCAATAGAAGGGCCCTCTGACTTTCAACTTTGAGCCAACTTATCTCGATTCCTGTGAAAGATATAAAAAATTACAACAACTGATAAATTGTTCACATGAAGTGAGATAATTGAGCGCAGATGTGACAGCGCGCTCTTCTATTATAGGTTTTACGGTTTTTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTATGAGGGAAAAATCAGCATCAATCATTTCGTAARATCATGAATTTTGTCACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTCATCTTCTGCCTATCCCACGATTTCAGCTCACATCAGCTCTTCTCCATTTTCAGAACTAGATCTCATTATAATTCCATTTTCTCTCTTCCAGCAAACTTCCCTTTCAATTATTTTATAATTTCCAGTAACTGCTCTTTTTGCTCATATTTTATGATGAGCGCTGAAAGTTTTCAACTCATTTCCAATTAATTTCTCTCAGCTCTCTGCTTCCATTTTTTGCATCCATTCGTTTTTTTTCTGTTTTGTCGGACACTGACATATTTATGTTGTCTCGTGTTGGCATATGGACAGGAGAGGCTTGGAGCAAAAAGACGCCAAAATTTTTCTTTCTTTTTCATTCGTCTGTTTTTTCGCAGAAAATGCTGAGAAGTACTCAGAATTTATTTCACCTGTCCCCGCCAAAGTCACATTTTCTAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>499 363 138</canonical_bands>
                <polymorphic_bands>637 363</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGAAGAATAAAAGGAGATTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAGAATTGTGAAATCTAAAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTATGAGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGTCACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTATGAGGGAAAAATCAGCATCAATCATTTCGTAARATCATGAATTTTGTCACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4882</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>56813</contig_pos>
        <strand>+</strand>
        <context>AAAAATCAGC[A/T]TCAATCATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTATTTTTAATATCTGAAAATGATTGTAAATTATGAGGGAAAAATCAGC</left_flank>
        <right_flank>TCAATCATTTCGTAAGATCATGAATTTTGTCACAGATTTCAAAATTTATT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATATTTTCATCCAATTTTATTTGTTCATTCTTTGAATTCCTAGATTTTAAGGTTCTATTATTCATTTAAATTGGAAATTTCATTAATACCAGGGGTCAAATTCCTAGAAACCTGTCTTTGTACTGTCATTTCCAATTATCAGATTTTCAGCTGTCTGTCTTTGTTCTGTCTGTAATACTGTAAAACCTGCAATAGAAGGGCCCTCTGACTTTCAACTTTGAGCCAACTTATCTCGATTCCTGTGAAAGATATAAAAAATTACAACAACTGATAAATTGTTCACATGAAGTGAGATAATTGAGCGCAGATGTGACAGCGCGCTCTTCTATTATAGGTTTTACGGTTTTTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTATGAGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGTCACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTCATCTTCTGCCTATCCCACGATTTCAGCTCACATCAGCTCTTCTCCATTTTCAGAACTAGATCTCATTATAATTCCATTTTCTCTCTTCCAGCAAACTTCCCTTTCAATTATTTTATAATTTCCAGTAACTGCTCTTTTTGCTCATATTTTATGATGAGCGCTGAAAGTTTTCAACTCATTTCCAATTAATTTCTCTCAGCTCTCTGCTTCCATTTTTTGCATCCATTCGTTTTTTTTCTGTTTTGTCGGACACTGACATATTTATGTTGTCTCGTGTTGGCATATGGACAGGAGAGGCTTGGAGCAAAAAGACGCCAAAATTTTTCTTTCTTTTTCATTCGTCTGTTTTTTCGCAGAAAATGCTGAGAAGTACTCAGAATTTATTTCACCTGTCCCCGCCAAAGT</canonical>
            <polymorphic>CATATTTTCATCCAATTTTATTTGTTCATTCTTTGAATTCCTAGATTTTAAGGTTCTATTATTCATTTAAATTGGAAATTTCATTAATACCAGGGGTCAAATTCCTAGAAACCTGTCTTTGTACTGTCATTTCCAATTATCAGATTTTCAGCTGTCTGTCTTTGTTCTGTCTGTAATACTGTAAAACCTGCAATAGAAGGGCCCTCTGACTTTCAACTTTGAGCCAACTTATCTCGATTCCTGTGAAAGATATAAAAAATTACAACAACTGATAAATTGTTCACATGAAGTGAGATAATTGAGCGCAGATGTGACAGCGCGCTCTTCTATTATAGGTTTTACGGTTTTTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTATGAGGGAAAAATCAGCWTCAATCATTTCGTAAGATCATGAATTTTGTCACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTCATCTTCTGCCTATCCCACGATTTCAGCTCACATCAGCTCTTCTCCATTTTCAGAACTAGATCTCATTATAATTCCATTTTCTCTCTTCCAGCAAACTTCCCTTTCAATTATTTTATAATTTCCAGTAACTGCTCTTTTTGCTCATATTTTATGATGAGCGCTGAAAGTTTTCAACTCATTTCCAATTAATTTCTCTCAGCTCTCTGCTTCCATTTTTTGCATCCATTCGTTTTTTTTCTGTTTTGTCGGACACTGACATATTTATGTTGTCTCGTGTTGGCATATGGACAGGAGAGGCTTGGAGCAAAAAGACGCCAAAATTTTTCTTTCTTTTTCATTCGTCTGTTTTTTCGCAGAAAATGCTGAGAAGTACTCAGAATTTATTTCACCTGTCCCCGCCAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGAAGAATAAAAGGAGATTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAGAATTGTGAAATCTAAAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTATGAGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGTCACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTATGAGGGAAAAATCAGCWTCAATCATTTCGTAAGATCATGAATTTTGTCACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4884</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>107710</contig_pos>
        <strand>+</strand>
        <context>GTTTCCTCTT[C/T]TTGAAAACAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCTGGAAGAGTCCACCCGATTATTAAAGGGTTCCACTCTGTTTCCTCTT</left_flank>
        <right_flank>TTGAAAACAATTTCAGCACAGTATCACGATATTGAGAAGACAAGAAGAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCGATGAAATTTAAAAAATTTATAGAAAACTCGCCATTGATTCAAATAGTTTCCAACCCGAAACTTAAGAAAACAACACTTCTCAGTTTAGAGGTAACATCATAAGACTACTTGAAAAATGAAGGACTTTTACAGCACATAATAGCTCGAGGAAATAGATCGGTCATTCTACAGGACAACATTTTTGTACGCAACAACTCCAAAAAGTGCAATATTTTAGACAAATGGAGTATGTTCAAGAAACAGTTAAATCTGGACTATACGGGAAGTGACTGTGGTAAGTTGTCTTGAACTGTCAGATTGAGTTTACATAATTTATTTCAGGAAATCGTGTATTGATAAATGCCAGCAAGAGGCTTTTGAAATCTTCAATAACAATTATATTAATTTATTTCTCTCTTTTTATGTAAATAAATAAATAAATAAAAATCATTCACTGATAGGATGTCTGGAAGAGTCCACCCGATTATTAAAGGGTTCCACTCTGTTTCCTCTTTTTGAAAACAATTTCAGCACAGTATCACGATATTGAGAAGACAAGAAGAAACATAGAATACTGTGGATTGTGGAGTTGACAATGAGAAGCGTCAAGGTGAACGAGTCGAACTTCTCAAAGTCTTTTCTGAAAGTCAAACAAACATCGCCCATTGATTGATTAACAACGTTACCCGTCTTTGTAATCATAAAGTTTATAATAACTCCACATAAATAATGCGCCGTATACGGTTTCAGAAATGAATACAGTTATAGCCATTGTCACGATTAATTTAGATGTGTTGTTTGGTGTTCTGAATTAAGCTTTGTCTTACAATATCCAGGCCAACTACTGTCAGATGCATAACTCGGTCCAATCTTGGAATTTCATCTCGAAGCAAACAGTAGAATATAAAGCTTGACGAGTTCTACAAAATGGTACCAAATTCAACTGTATTTACCAATCCAGTTTAAGATCAAATGGCGAGGAACAGCAGAATCAAACAACTTATATTTTACGATC</canonical>
            <polymorphic>AAATCGATGAAATTTAAAAAATTTATAGAAAACTCGCCATTGATTCAAATAGTTTCCAACCCGAAACTTAAGAAAACAACACTTCTCAGTTTAGAGGTAACATCATAAGACTACTTGAAAAATGAAGGACTTTTACAGCACATAATAGCTCGAGGAAATAGATCGGTCATTCTACAGGACAACATTTTTGTACGCAACAACTCCAAAAAGTGCAATATTTTAGACAAATGGAGTATGTTCAAGAAACAGTTAAATCTGGACTATACGGGAAGTGACTGTGGTAAGTTGTCTTGAACTGTCAGATTGAGTTTACATAATTTATTTCAGGAAATCGTGTATTGATAAATGCCAGCAAGAGGCTTTTGAAATCTTCAATAACAATTATATTAATTTATTTCTCTCTTTTTATGTAAATAAATAAATAAATAAAAATCATTCACTGATAGGATGTCTGGAAGAGTCCACCCGATTATTAAAGGGTTCCACTCTGTTTCCTCTTYTTGAAAACAATTTCAGCACAGTATCACGATATTGAGAAGACAAGAAGAAACATAGAATACTGTGGATTGTGGAGTTGACAATGAGAAGCGTCAAGGTGAACGAGTCGAACTTCTCAAAGTCTTTTCTGAAAGTCAAACAAACATCGCCCATTGATTGATTAACAACGTTACCCGTCTTTGTAATCATAAAGTTTATAATAACTCCACATAAATAATGCGCCGTATACGGTTTCAGAAATGAATACAGTTATAGCCATTGTCACGATTAATTTAGATGTGTTGTTTGGTGTTCTGAATTAAGCTTTGTCTTACAATATCCAGGCCAACTACTGTCAGATGCATAACTCGGTCCAATCTTGGAATTTCATCTCGAAGCAAACAGTAGAATATAAAGCTTGACGAGTTCTACAAAATGGTACCAAATTCAACTGTATTTACCAATCCAGTTTAAGATCAAATGGCGAGGAACAGCAGAATCAAACAACTTATATTTTACGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTGATAGGATGTCTGGAAGAGT</pcr_primer_p1>
		<pcr_primer_p2>TTATGATTACAAAGACGGGTAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACTGATAGGATGTCTGGAAGAGTCCACCCGATTATTAAAGGGTTCCACTCTGTTTCCTCTTTTTGAAAACAATTTCAGCACAGTATCACGATATTGAGAAGACAAGAAGAAACATAGAATACTGTGGATTGTGGAGTTGACAATGAGAAGCGTCAAGGTGAACGAGTCGAACTTCTCAAAGTCTTTTCTGAAAGTCAAACAAACATCGCCCATTGATTGATTAACAACGTTACCCGTCTTTGTAATCATAA</canonical_amplicon>
		<polymorphic_amplicon>ACTGATAGGATGTCTGGAAGAGTCCACCCGATTATTAAAGGGTTCCACTCTGTTTCCTCTTYTTGAAAACAATTTCAGCACAGTATCACGATATTGAGAAGACAAGAAGAAACATAGAATACTGTGGATTGTGGAGTTGACAATGAGAAGCGTCAAGGTGAACGAGTCGAACTTCTCAAAGTCTTTTCTGAAAGTCAAACAAACATCGCCCATTGATTGATTAACAACGTTACCCGTCTTTGTAATCATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4903</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>136656</contig_pos>
        <strand>+</strand>
        <context>ATGAAAATGA[A/T]CAAGGCACAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAGAGAACTTACTGATCCTGGAAATCATTGTAATAATAAATGAAAATGA</left_flank>
        <right_flank>CAAGGCACATATGTTGCTTCAGATAGGAACAGGGAGACAGCCATCATAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGATTTGGTGGTAAAACGTGATTTTCTCATAGAAATCAGCCTCTCAAGGAGTTGAACACATTTTTCATGTCTCCTAATGATTCAAAGGTTTTTGAATATGGTTTATTCAGAAATCAAAATGAAATACTGAAATTTTCTCAAAATGTCTTCGAATCGTTTGACGTTTTCGAGGTATGTGCAGTCGAGGGATGTGCTGATGATTCGACAACAATCAGATTCTGAAACAGAACACTCATTAATCTTCCAACACCAACATAATTACCTTAACATTGTCCATCTTCTGTTTCTCTTTCCATCCGACAATTCTTTTGATAGTGTCTCTGTACTGTGAAGACATGAAAACGCAAATAATACAATGAGTTGTAGAATTTATCATGGAGAAAATAAGTGCAAGAAAATCTTCCAAAATCAATCTGAATCATGTGGTATTTGAATAAAAATAATAGAGGAGAGAACTTACTGATCCTGGAAATCATTGTAATAATAAATGAAAATGAACAAGGCACATATGTTGCTTCAGATAGGAACAGGGAGACAGCCATCATAACAATCAATCCAGATGTGTTATTGGGTCTGAAACAAAATCAAGGTTGCTGAAAGCTTTCATACCACGCCAATTTATCTATAAGCCAGGCCGCGGTCGCAACCTCTTTTTGACACCCACAAACTCACTTGTCATTTTTCAAGCCTTTTCTTCGTTTTTAGCCTGATACAATGCTATAACAAGTGCAGCGGTAGCGAAAATATAAATGAAGCTAACGCTAACAGAAATGTATCCATTCACATAACGGAATGTTCTCTCCCATTGTTCTCCAGTTACAAACCGGTAGGGATCGTAAGTGGTGCGGTATCCTGGTTCAATTGGGTTGCATCTGAAAAATACAAATTGTTTTGAGATTTGGAGAACAACTCACTCAGGAACAGTTTCAATTTTACTCGATACGAAATAATACATTCCCCATGCTCCGGAAACGATTGAGAAAGATAAAACAACAAGG</canonical>
            <polymorphic>TGGGATTTGGTGGTAAAACGTGATTTTCTCATAGAAATCAGCCTCTCAAGGAGTTGAACACATTTTTCATGTCTCCTAATGATTCAAAGGTTTTTGAATATGGTTTATTCAGAAATCAAAATGAAATACTGAAATTTTCTCAAAATGTCTTCGAATCGTTTGACGTTTTCGAGGTATGTGCAGTCGAGGGATGTGCTGATGATTCGACAACAATCAGATTCTGAAACAGAACACTCATTAATCTTCCAACACCAACATAATTACCTTAACATTGTCCATCTTCTGTTTCTCTTTCCATCCGACAATTCTTTTGATAGTGTCTCTGTACTGTGAAGACATGAAAACGCAAATAATACAATGAGTTGTAGAATTTATCATGGAGAAAATAAGTGCAAGAAAATCTTCCAAAATCAATCTGAATCATGTGGTATTTGAATAAAAATAATAGAGGAGAGAACTTACTGATCCTGGAAATCATTGTAATAATAAATGAAAATGAWCAAGGCACATATGTTGCTTCAGATAGGAACAGGGAGACAGCCATCATAACAATCAATCCAGATGTGTTATTGGGTCTGAAACAAAATCAAGGTTGCTGAAAGCTTTCATACCACGCCAATTTATCTATAAGCCAGGCCGCGGTCGCAACCTCTTTTTGACACCCACAAACTCACTTGTCATTTTTCAAGCCTTTTCTTCGTTTTTAGCCTGATACAATGCTATAACAAGTGCAGCGGTAGCGAAAATATAAATGAAGCTAACGCTAACAGAAATGTATCCATTCACATAACGGAATGTTCTCTCCCATTGTTCTCCAGTTACAAACCGGTAGGGATCGTAAGTGGTGCGGTATCCTGGTTCAATTGGGTTGCATCTGAAAAATACAAATTGTTTTGAGATTTGGAGAACAACTCACTCAGGAACAGTTTCAATTTTACTCGATACGAAATAATACATTCCCCATGCTCCGGAAACGATTGAGAAAGATAAAACAACAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCTGTACTGTGAAGACATGAA</pcr_primer_p1>
		<pcr_primer_p2>AACACATCTGGATTGATTGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTCTGTACTGTGAAGACATGAAAACGCAAATAATACAATGAGTTGTAGAATTTATCATGGAGAAAATAAGTGCAAGAAAATCTTCCAAAATCAATCTGAATCATGTGGTATTTGAATAAAAATAATAGAGGAGAGAACTTACTGATCCTGGAAATCATTGTAATAATAAATGAAAATGAACAAGGCACATATGTTGCTTCAGATAGGAACAGGGAGACAGCCATCATAACAATCAATCCAGATGTGTT</canonical_amplicon>
		<polymorphic_amplicon>TCTCTGTACTGTGAAGACATGAAAACGCAAATAATACAATGAGTTGTAGAATTTATCATGGAGAAAATAAGTGCAAGAAAATCTTCCAAAATCAATCTGAATCATGTGGTATTTGAATAAAAATAATAGAGGAGAGAACTTACTGATCCTGGAAATCATTGTAATAATAAATGAAAATGAWCAAGGCACATATGTTGCTTCAGATAGGAACAGGGAGACAGCCATCATAACAATCAATCCAGATGTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4904</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>144781</contig_pos>
        <strand>+</strand>
        <context>GAAAGGATTT[C/T]TGAATACCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCAGCATAACATCCCATGTTGAATTTAAAAAAAGTTTAAGAAAGGATTT</left_flank>
        <right_flank>TGAATACCAGATTTTTTTAGGTGATGGTGGAGGTTTAAATCTTTGTTTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTGGCTTTGAAAATATCCCAAATCTCGGGTTCAATGGATTTCTTACAATAAAAGTTCTGATAAGAGTGATACTGAAACTGAGCCAAGTTGAACATCTTCTGGTGAAGTTTCTAAAGCAATCCATAAAAATCTCGAGCCATATTATTTTATAATCTGTCTCCTTAGAATAGCAAATGTTCAAAATCTTGAAAAGATTCACAACCTCCCGATGGACATCAAATAGCACTGAGCAGATATCAATTAGGGCAATTGCAGTCATTATTACGTAAATTGGAGAGTTCCTTAATGGTTTTCGAGTGAGGATAAGAATGTGGAATATGTTTATTAAAATACAAGGACCAGATATAAAAATTCCATTGTCATAAAGCTGAAAGCCAATAATTTCGCATGACCTATTAAAAACTTTCCAAAGAAATGTGAGAAGTTTCGAATTTCGATAGATGTAATCAGCATAACATCCCATGTTGAATTTAAAAAAAGTTTAAGAAAGGATTTCTGAATACCAGATTTTTTTAGGTGATGGTGGAGGTTTAAATCTTTGTTTTCTTGGTTTATAGCATGCCAAAATTAGAATGATGTCAATATAATAAAATGTTTCCAGGGAAAAAATGATGTTAGCACTGAAACGTTTTTTGGTCCACTAATAATTAGAGCTTCTAGTCCAAGCTGTTCAAGATGATTTTAGTCCAAGCTGTTTGAGAGTATGCATTCTGACGTGACGGGTGGACCAAGGGGGCTTACAGGGTGCGGCAAAAGTTCTGCAAGCGATGTTTGACGCATGCGAACGCGCTTTTCGTGCATTGTATTTATGTTCATATTTTTCCTCGTCTCTTCATTAGTAAATGTGCAGAGTTTCATGTCCTCAATTAAAAAAAAATGGCACTACTTATAGATTTACTATAACCCTCATATTCATAAAGAACACAGGTCTCCATCAGAATCTTAGTTGTTTGAATTTTCGAAGACTGATAGTGAGAGAAATTCTGCTCAGGTGGT</canonical>
            <polymorphic>ATTTTTGGCTTTGAAAATATCCCAAATCTCGGGTTCAATGGATTTCTTACAATAAAAGTTCTGATAAGAGTGATACTGAAACTGAGCCAAGTTGAACATCTTCTGGTGAAGTTTCTAAAGCAATCCATAAAAATCTCGAGCCATATTATTTTATAATCTGTCTCCTTAGAATAGCAAATGTTCAAAATCTTGAAAAGATTCACAACCTCCCGATGGACATCAAATAGCACTGAGCAGATATCAATTAGGGCAATTGCAGTCATTATTACGTAAATTGGAGAGTTCCTTAATGGTTTTCGAGTGAGGATAAGAATGTGGAATATGTTTATTAAAATACAAGGACCAGATATAAAAATTCCATTGTCATAAAGCTGAAAGCCAATAATTTCGCATGACCTATTAAAAACTTTCCAAAGAAATGTGAGAAGTTTCGAATTTCGATAGATGTAATCAGCATAACATCCCATGTTGAATTTAAAAAAAGTTTAAGAAAGGATTTYTGAATACCAGATTTTTTTAGGTGATGGTGGAGGTTTAAATCTTTGTTTTCTTGGTTTATAGCATGCCAAAATTAGAATGATGTCAATATAATAAAATGTTTCCAGGGAAAAAATGATGTTAGCACTGAAACGTTTTTTGGTCCACTAATAATTAGAGCTTCTAGTCCAAGCTGTTCAAGATGATTTTAGTCCAAGCTGTTTGAGAGTATGCATTCTGACGTGACGGGTGGACCAAGGGGGCTTACAGGGTGCGGCAAAAGTTCTGCAAGCGATGTTTGACGCATGCGAACGCGCTTTTCGTGCATTGTATTTATGTTCATATTTTTCCTCGTCTCTTCATTAGTAAATGTGCAGAGTTTCATGTCCTCAATTAAAAAAAAATGGCACTACTTATAGATTTACTATAACCCTCATATTCATAAAGAACACAGGTCTCCATCAGAATCTTAGTTGTTTGAATTTTCGAAGACTGATAGTGAGAGAAATTCTGCTCAGGTGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>439 225 215 62 59</canonical_bands>
                <polymorphic_bands>654 225 62 59</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAATTTCGCATGACCTATTAAA</pcr_primer_p1>
		<pcr_primer_p2>GTTTCAGTGCTAACATCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAATTTCGCATGACCTATTAAAAACTTTCCAAAGAAATGTGAGAAGTTTCGAATTTCGATAGATGTAATCAGCATAACATCCCATGTTGAATTTAAAAAAAGTTTAAGAAAGGATTTCTGAATACCAGATTTTTTTAGGTGATGGTGGAGGTTTAAATCTTTGTTTTCTTGGTTTATAGCATGCCAAAATTAGAATGATGTCAATATAATAAAATGTTTCCAGGGAAAAAATGATGTTAGCACTGAAAC</canonical_amplicon>
		<polymorphic_amplicon>ATAATTTCGCATGACCTATTAAAAACTTTCCAAAGAAATGTGAGAAGTTTCGAATTTCGATAGATGTAATCAGCATAACATCCCATGTTGAATTTAAAAAAAGTTTAAGAAAGGATTTYTGAATACCAGATTTTTTTAGGTGATGGTGGAGGTTTAAATCTTTGTTTTCTTGGTTTATAGCATGCCAAAATTAGAATGATGTCAATATAATAAAATGTTTCCAGGGAAAAAATGATGTTAGCACTGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4905</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>144644</contig_pos>
        <strand>+</strand>
        <context>AAATTCCATT[G/T]TCATAAAGCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGTGGAATATGTTTATTAAAATACAAGGACCAGATATAAAAATTCCATT</left_flank>
        <right_flank>TCATAAAGCTGAAAGCCAATAATTTCGCATGACCTATTAAAAACTTTCCA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAAAAAATAATATTTGTTTCTGGATACTGTGTAAATTTGTAGTTTTTGTTGTCCAAAACTATTTTAAACTTGTACAAATCGAAAATATGAATTGGAGCACATAAGACTAAAACACCGGTTATAAAAAGATATGCAATTTTTGGCTTTGAAAATATCCCAAATCTCGGGTTCAATGGATTTCTTACAATAAAAGTTCTGATAAGAGTGATACTGAAACTGAGCCAAGTTGAACATCTTCTGGTGAAGTTTCTAAAGCAATCCATAAAAATCTCGAGCCATATTATTTTATAATCTGTCTCCTTAGAATAGCAAATGTTCAAAATCTTGAAAAGATTCACAACCTCCCGATGGACATCAAATAGCACTGAGCAGATATCAATTAGGGCAATTGCAGTCATTATTACGTAAATTGGAGAGTTCCTTAATGGTTTTCGAGTGAGGATAAGAATGTGGAATATGTTTATTAAAATACAAGGACCAGATATAAAAATTCCATTGTCATAAAGCTGAAAGCCAATAATTTCGCATGACCTATTAAAAACTTTCCAAAGAAATGTGAGAAGTTTCGAATTTCGATAGATGTAATCAGCATAACATCCCATGTTGAATTTAAAAAAAGTTTAAGAAAGGATTTCTGAATACCAGATTTTTTTAGGTGATGGTGGAGGTTTAAATCTTTGTTTTCTTGGTTTATAGCATGCCAAAATTAGAATGATGTCAATATAATAAAATGTTTCCAGGGAAAAAATGATGTTAGCACTGAAACGTTTTTTGGTCCACTAATAATTAGAGCTTCTAGTCCAAGCTGTTCAAGATGATTTTAGTCCAAGCTGTTTGAGAGTATGCATTCTGACGTGACGGGTGGACCAAGGGGGCTTACAGGGTGCGGCAAAAGTTCTGCAAGCGATGTTTGACGCATGCGAACGCGCTTTTCGTGCATTGTATTTATGTTCATATTTTTCCTCGTCTCTTCATTAGTAAATGTGCAGAGTTTCATG</canonical>
            <polymorphic>AATAAAAAATAATATTTGTTTCTGGATACTGTGTAAATTTGTAGTTTTTGTTGTCCAAAACTATTTTAAACTTGTACAAATCGAAAATATGAATTGGAGCACATAAGACTAAAACACCGGTTATAAAAAGATATGCAATTTTTGGCTTTGAAAATATCCCAAATCTCGGGTTCAATGGATTTCTTACAATAAAAGTTCTGATAAGAGTGATACTGAAACTGAGCCAAGTTGAACATCTTCTGGTGAAGTTTCTAAAGCAATCCATAAAAATCTCGAGCCATATTATTTTATAATCTGTCTCCTTAGAATAGCAAATGTTCAAAATCTTGAAAAGATTCACAACCTCCCGATGGACATCAAATAGCACTGAGCAGATATCAATTAGGGCAATTGCAGTCATTATTACGTAAATTGGAGAGTTCCTTAATGGTTTTCGAGTGAGGATAAGAATGTGGAATATGTTTATTAAAATACAAGGACCAGATATAAAAATTCCATTKTCATAAAGCTGAAAGCCAATAATTTCGCATGACCTATTAAAAACTTTCCAAAGAAATGTGAGAAGTTTCGAATTTCGATAGATGTAATCAGCATAACATCCCATGTTGAATTTAAAAAAAGTTTAAGAAAGGATTTCTGAATACCAGATTTTTTTAGGTGATGGTGGAGGTTTAAATCTTTGTTTTCTTGGTTTATAGCATGCCAAAATTAGAATGATGTCAATATAATAAAATGTTTCCAGGGAAAAAATGATGTTAGCACTGAAACGTTTTTTGGTCCACTAATAATTAGAGCTTCTAGTCCAAGCTGTTCAAGATGATTTTAGTCCAAGCTGTTTGAGAGTATGCATTCTGACGTGACGGGTGGACCAAGGGGGCTTACAGGGTGCGGCAAAAGTTCTGCAAGCGATGTTTGACGCATGCGAACGCGCTTTTCGTGCATTGTATTTATGTTCATATTTTTCCTCGTCTCTTCATTAGTAAATGTGCAGAGTTTCATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGAGGATAAGAATGTGGAATA</pcr_primer_p1>
		<pcr_primer_p2>AAAACAAAGATTTAAACCTCCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTGAGGATAAGAATGTGGAATATGTTTATTAAAATACAAGGACCAGATATAAAAATTCCATTGTCATAAAGCTGAAAGCCAATAATTTCGCATGACCTATTAAAAACTTTCCAAAGAAATGTGAGAAGTTTCGAATTTCGATAGATGTAATCAGCATAACATCCCATGTTGAATTTAAAAAAAGTTTAAGAAAGGATTTCTGAATACCAGATTTTTTTAGGTGATGGTGGAGGTTTAAATCTTTGTTTT</canonical_amplicon>
		<polymorphic_amplicon>AGTGAGGATAAGAATGTGGAATATGTTTATTAAAATACAAGGACCAGATATAAAAATTCCATTKTCATAAAGCTGAAAGCCAATAATTTCGCATGACCTATTAAAAACTTTCCAAAGAAATGTGAGAAGTTTCGAATTTCGATAGATGTAATCAGCATAACATCCCATGTTGAATTTAAAAAAAGTTTAAGAAAGGATTTCTGAATACCAGATTTTTTTAGGTGATGGTGGAGGTTTAAATCTTTGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4906</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>144511</contig_pos>
        <strand>+</strand>
        <context>TCAAATAGCA[C/G]TGAGCAGATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTTCAAAATCTTGAAAAGATTCACAACCTCCCGATGGACATCAAATAGCA</left_flank>
        <right_flank>TGAGCAGATATCAATTAGGGCAATTGCAGTCATTATTACGTAAATTGGAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACCAAGCCAACACCAACACCATGGCCAATTCAAAAGAAAGGATCTCACCTTTGAAATCAATCCATCAAGAAGCTTGTGCATAGTGTAAACTGCGTCATCATGATCCCAAAATAATTCCGTTGTTTCCCATGAATAAAAAATAATATTTGTTTCTGGATACTGTGTAAATTTGTAGTTTTTGTTGTCCAAAACTATTTTAAACTTGTACAAATCGAAAATATGAATTGGAGCACATAAGACTAAAACACCGGTTATAAAAAGATATGCAATTTTTGGCTTTGAAAATATCCCAAATCTCGGGTTCAATGGATTTCTTACAATAAAAGTTCTGATAAGAGTGATACTGAAACTGAGCCAAGTTGAACATCTTCTGGTGAAGTTTCTAAAGCAATCCATAAAAATCTCGAGCCATATTATTTTATAATCTGTCTCCTTAGAATAGCAAATGTTCAAAATCTTGAAAAGATTCACAACCTCCCGATGGACATCAAATAGCACTGAGCAGATATCAATTAGGGCAATTGCAGTCATTATTACGTAAATTGGAGAGTTCCTTAATGGTTTTCGAGTGAGGATAAGAATGTGGAATATGTTTATTAAAATACAAGGACCAGATATAAAAATTCCATTGTCATAAAGCTGAAAGCCAATAATTTCGCATGACCTATTAAAAACTTTCCAAAGAAATGTGAGAAGTTTCGAATTTCGATAGATGTAATCAGCATAACATCCCATGTTGAATTTAAAAAAAGTTTAAGAAAGGATTTCTGAATACCAGATTTTTTTAGGTGATGGTGGAGGTTTAAATCTTTGTTTTCTTGGTTTATAGCATGCCAAAATTAGAATGATGTCAATATAATAAAATGTTTCCAGGGAAAAAATGATGTTAGCACTGAAACGTTTTTTGGTCCACTAATAATTAGAGCTTCTAGTCCAAGCTGTTCAAGATGATTTTAGTCCAAGCTGTTTGAGAGTATGCATTCTGACGTGACGGGTGG</canonical>
            <polymorphic>ACACCAAGCCAACACCAACACCATGGCCAATTCAAAAGAAAGGATCTCACCTTTGAAATCAATCCATCAAGAAGCTTGTGCATAGTGTAAACTGCGTCATCATGATCCCAAAATAATTCCGTTGTTTCCCATGAATAAAAAATAATATTTGTTTCTGGATACTGTGTAAATTTGTAGTTTTTGTTGTCCAAAACTATTTTAAACTTGTACAAATCGAAAATATGAATTGGAGCACATAAGACTAAAACACCGGTTATAAAAAGATATGCAATTTTTGGCTTTGAAAATATCCCAAATCTCGGGTTCAATGGATTTCTTACAATAAAAGTTCTGATAAGAGTGATACTGAAACTGAGCCAAGTTGAACATCTTCTGGTGAAGTTTCTAAAGCAATCCATAAAAATCTCGAGCCATATTATTTTATAATCTGTCTCCTTAGAATAGCAAATGTTCAAAATCTTGAAAAGATTCACAACCTCCCGATGGACATCAAATAGCASTGAGCAGATATCAATTAGGGCAATTGCAGTCATTATTACGTAAATTGGAGAGTTCCTTAATGGTTTTCGAGTGAGGATAAGAATGTGGAATATGTTTATTAAAATACAAGGACCAGATATAAAAATTCCATTGTCATAAAGCTGAAAGCCAATAATTTCGCATGACCTATTAAAAACTTTCCAAAGAAATGTGAGAAGTTTCGAATTTCGATAGATGTAATCAGCATAACATCCCATGTTGAATTTAAAAAAAGTTTAAGAAAGGATTTCTGAATACCAGATTTTTTTAGGTGATGGTGGAGGTTTAAATCTTTGTTTTCTTGGTTTATAGCATGCCAAAATTAGAATGATGTCAATATAATAAAATGTTTCCAGGGAAAAAATGATGTTAGCACTGAAACGTTTTTTGGTCCACTAATAATTAGAGCTTCTAGTCCAAGCTGTTCAAGATGATTTTAGTCCAAGCTGTTTGAGAGTATGCATTCTGACGTGACGGGTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 352 83 65</canonical_bands>
                <polymorphic_bands>565 352 83</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>106 100 95 94 93 79 78 74 68 36 31 29 27 20 15 14 11 7 7 6 6 3 1</canonical_bands>
                <polymorphic_bands>106 101 100 95 94 93 79 78 68 36 31 29 20 15 14 11 7 7 6 6 3 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTCTCCTTAGAATAGCAAATG</pcr_primer_p1>
		<pcr_primer_p2>TTTAATAGGTCATGCGAAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTGTCTCCTTAGAATAGCAAATGTTCAAAATCTTGAAAAGATTCACAACCTCCCGATGGACATCAAATAGCACTGAGCAGATATCAATTAGGGCAATTGCAGTCATTATTACGTAAATTGGAGAGTTCCTTAATGGTTTTCGAGTGAGGATAAGAATGTGGAATATGTTTATTAAAATACAAGGACCAGATATAAAAATTCCATTGTCATAAAGCTGAAAGCCAATAATTTCGCATGACCTATTAAA</canonical_amplicon>
		<polymorphic_amplicon>CTGTCTCCTTAGAATAGCAAATGTTCAAAATCTTGAAAAGATTCACAACCTCCCGATGGACATCAAATAGCASTGAGCAGATATCAATTAGGGCAATTGCAGTCATTATTACGTAAATTGGAGAGTTCCTTAATGGTTTTCGAGTGAGGATAAGAATGTGGAATATGTTTATTAAAATACAAGGACCAGATATAAAAATTCCATTGTCATAAAGCTGAAAGCCAATAATTTCGCATGACCTATTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4907</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>188889</contig_pos>
        <strand>+</strand>
        <context>GATATTCAAG[C/T]TCATTCGRAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACCAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAG</left_flank>
        <right_flank>TCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCGGTCGACGCGCGGGCCAGGTCGGTCAACTGGGTCGGTTGGCGGTTGACGATTTTGGACCGACGAAAGTAAAAGCCTCTGACCAGGATCCGGATAAGGAGTCCAGAGACAGCAAAATAATTTTGTTCGGACAACGGACGGCCTGACCGGGGAACAACGGACTGTCCGTACATCTCTAGATGGGACCATGTTCGTCTTGTTGGGACTTTGGGACCCATGATCACACCATGACCAACTATCCCAATTTACGACCTCTCATATGGGATAGACCCTATAACTTACAACATCAACTGCTCCATGGAATAATCAGTGCACCAACTCAAGTCAATCTCAAAATTCCCAAATTCCAAACATGTATCGTTTCCCAACATATGAACGTCTTCAGGGAAAATCTGTTTCCTTTGATAGTCGGCAGTTTCAGATAGCTTTTCTAGACGAATCCAACCGAACCAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGACTATTCTGATATTGATAAGGTCTGCAGTTGATGGAGGGTGGCTGAAAAATAGTGAGTAAGAAGTTTCTAGCTCTATTTGAACCTGATGAAAAATCCAATTAGTCTTATTCACGAGGTAAGTCACATCTATAACGGTGTTTCTGAATGTAGCTTTATCGGGTTCACAGCACAAAATGAAGCTTGGTCGGCCCAGGAAATTTGATAAACTTTGCGGGGACGATGCTATGAAATTTTGGCGTTTTGAAAAATTGCTCGAGCAGGAGATCAAGTCGCGATTGTTTTGGAATTCTGTAAAAGTCA</canonical>
            <polymorphic>GATCGGTCGACGCGCGGGCCAGGTCGGTCAACTGGGTCGGTTGGCGGTTGACGATTTTGGACCGACGAAAGTAAAAGCCTCTGACCAGGATCCGGATAAGGAGTCCAGAGACAGCAAAATAATTTTGTTCGGACAACGGACGGCCTGACCGGGGAACAACGGACTGTCCGTACATCTCTAGATGGGACCATGTTCGTCTTGTTGGGACTTTGGGACCCATGATCACACCATGACCAACTATCCCAATTTACGACCTCTCATATGGGATAGACCCTATAACTTACAACATCAACTGCTCCATGGAATAATCAGTGCACCAACTCAAGTCAATCTCAAAATTCCCAAATTCCAAACATGTATCGTTTCCCAACATATGAACGTCTTCAGGGAAAATCTGTTTCCTTTGATAGTCGGCAGTTTCAGATAGCTTTTCTAGACGAATCCAACCGAACCAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGYTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGACTATTCTGATATTGATAAGGTCTGCAGTTGATGGAGGGTGGCTGAAAAATAGTGAGTAAGAAGTTTCTAGCTCTATTTGAACCTGATGAAAAATCCAATTAGTCTTATTCACGAGGTAAGTCACATCTATAACGGTGTTTCTGAATGTAGCTTTATCGGGTTCACAGCACAAAATGAAGCTTGGTCGGCCCAGGAAATTTGATAAACTTTGCGGGGACGATGCTATGAAATTTTGGCGTTTTGAAAAATTGCTCGAGCAGGAGATCAAGTCGCGATTGTTTTGGAATTCTGTAAAAGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCAGGCGGTTTTTATTAT</pcr_primer_p1>
		<pcr_primer_p2>GAAAAACTGGCATTTAGTTTAGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AACCAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTC</canonical_amplicon>
		<polymorphic_amplicon>AACCAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGYTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4908</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>188897</contig_pos>
        <strand>+</strand>
        <context>AGYTCATTCG[A/G]AACTCTAGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCG</left_flank>
        <right_flank>AACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACGCGCGGGCCAGGTCGGTCAACTGGGTCGGTTGGCGGTTGACGATTTTGGACCGACGAAAGTAAAAGCCTCTGACCAGGATCCGGATAAGGAGTCCAGAGACAGCAAAATAATTTTGTTCGGACAACGGACGGCCTGACCGGGGAACAACGGACTGTCCGTACATCTCTAGATGGGACCATGTTCGTCTTGTTGGGACTTTGGGACCCATGATCACACCATGACCAACTATCCCAATTTACGACCTCTCATATGGGATAGACCCTATAACTTACAACATCAACTGCTCCATGGAATAATCAGTGCACCAACTCAAGTCAATCTCAAAATTCCCAAATTCCAAACATGTATCGTTTCCCAACATATGAACGTCTTCAGGGAAAATCTGTTTCCTTTGATAGTCGGCAGTTTCAGATAGCTTTTCTAGACGAATCCAACCGAACCAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGACTATTCTGATATTGATAAGGTCTGCAGTTGATGGAGGGTGGCTGAAAAATAGTGAGTAAGAAGTTTCTAGCTCTATTTGAACCTGATGAAAAATCCAATTAGTCTTATTCACGAGGTAAGTCACATCTATAACGGTGTTTCTGAATGTAGCTTTATCGGGTTCACAGCACAAAATGAAGCTTGGTCGGCCCAGGAAATTTGATAAACTTTGCGGGGACGATGCTATGAAATTTTGGCGTTTTGAAAAATTGCTCGAGCAGGAGATCAAGTCGCGATTGTTTTGGAATTCTGTAAAAGTCAATTTTGAA</canonical>
            <polymorphic>GACGCGCGGGCCAGGTCGGTCAACTGGGTCGGTTGGCGGTTGACGATTTTGGACCGACGAAAGTAAAAGCCTCTGACCAGGATCCGGATAAGGAGTCCAGAGACAGCAAAATAATTTTGTTCGGACAACGGACGGCCTGACCGGGGAACAACGGACTGTCCGTACATCTCTAGATGGGACCATGTTCGTCTTGTTGGGACTTTGGGACCCATGATCACACCATGACCAACTATCCCAATTTACGACCTCTCATATGGGATAGACCCTATAACTTACAACATCAACTGCTCCATGGAATAATCAGTGCACCAACTCAAGTCAATCTCAAAATTCCCAAATTCCAAACATGTATCGTTTCCCAACATATGAACGTCTTCAGGGAAAATCTGTTTCCTTTGATAGTCGGCAGTTTCAGATAGCTTTTCTAGACGAATCCAACCGAACCAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCGRAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGACTATTCTGATATTGATAAGGTCTGCAGTTGATGGAGGGTGGCTGAAAAATAGTGAGTAAGAAGTTTCTAGCTCTATTTGAACCTGATGAAAAATCCAATTAGTCTTATTCACGAGGTAAGTCACATCTATAACGGTGTTTCTGAATGTAGCTTTATCGGGTTCACAGCACAAAATGAAGCTTGGTCGGCCCAGGAAATTTGATAAACTTTGCGGGGACGATGCTATGAAATTTTGGCGTTTTGAAAAATTGCTCGAGCAGGAGATCAAGTCGCGATTGTTTTGGAATTCTGTAAAAGTCAATTTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>497 450 53</canonical_bands>
                <polymorphic_bands>550 450</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 395 54 53</canonical_bands>
                <polymorphic_bands>551 395 54</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGGCGGTTTTTATTATCTCTA</pcr_primer_p1>
		<pcr_primer_p2>GTCTAGAAAAACTGGCATTTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGAC</canonical_amplicon>
		<polymorphic_amplicon>CAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCGRAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4909</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>188936</contig_pos>
        <strand>+</strand>
        <context>GTTCTTGAAA[C/T]TCTGAAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGTTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAA</left_flank>
        <right_flank>TCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGACGATTTTGGACCGACGAAAGTAAAAGCCTCTGACCAGGATCCGGATAAGGAGTCCAGAGACAGCAAAATAATTTTGTTCGGACAACGGACGGCCTGACCGGGGAACAACGGACTGTCCGTACATCTCTAGATGGGACCATGTTCGTCTTGTTGGGACTTTGGGACCCATGATCACACCATGACCAACTATCCCAATTTACGACCTCTCATATGGGATAGACCCTATAACTTACAACATCAACTGCTCCATGGAATAATCAGTGCACCAACTCAAGTCAATCTCAAAATTCCCAAATTCCAAACATGTATCGTTTCCCAACATATGAACGTCTTCAGGGAAAATCTGTTTCCTTTGATAGTCGGCAGTTTCAGATAGCTTTTCTAGACGAATCCAACCGAACCAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGACTATTCTGATATTGATAAGGTCTGCAGTTGATGGAGGGTGGCTGAAAAATAGTGAGTAAGAAGTTTCTAGCTCTATTTGAACCTGATGAAAAATCCAATTAGTCTTATTCACGAGGTAAGTCACATCTATAACGGTGTTTCTGAATGTAGCTTTATCGGGTTCACAGCACAAAATGAAGCTTGGTCGGCCCAGGAAATTTGATAAACTTTGCGGGGACGATGCTATGAAATTTTGGCGTTTTGAAAAATTGCTCGAGCAGGAGATCAAGTCGCGATTGTTTTGGAATTCTGTAAAAGTCAATTTTGAAGCTTTTATGGGTTTTGAGCACTCCGACCCCTAAGATAAT</canonical>
            <polymorphic>TTGACGATTTTGGACCGACGAAAGTAAAAGCCTCTGACCAGGATCCGGATAAGGAGTCCAGAGACAGCAAAATAATTTTGTTCGGACAACGGACGGCCTGACCGGGGAACAACGGACTGTCCGTACATCTCTAGATGGGACCATGTTCGTCTTGTTGGGACTTTGGGACCCATGATCACACCATGACCAACTATCCCAATTTACGACCTCTCATATGGGATAGACCCTATAACTTACAACATCAACTGCTCCATGGAATAATCAGTGCACCAACTCAAGTCAATCTCAAAATTCCCAAATTCCAAACATGTATCGTTTCCCAACATATGAACGTCTTCAGGGAAAATCTGTTTCCTTTGATAGTCGGCAGTTTCAGATAGCTTTTCTAGACGAATCCAACCGAACCAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAAYTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGACTATTCTGATATTGATAAGGTCTGCAGTTGATGGAGGGTGGCTGAAAAATAGTGAGTAAGAAGTTTCTAGCTCTATTTGAACCTGATGAAAAATCCAATTAGTCTTATTCACGAGGTAAGTCACATCTATAACGGTGTTTCTGAATGTAGCTTTATCGGGTTCACAGCACAAAATGAAGCTTGGTCGGCCCAGGAAATTTGATAAACTTTGCGGGGACGATGCTATGAAATTTTGGCGTTTTGAAAAATTGCTCGAGCAGGAGATCAAGTCGCGATTGTTTTGGAATTCTGTAAAAGTCAATTTTGAAGCTTTTATGGGTTTTGAGCACTCCGACCCCTAAGATAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGCGGTTTTTATTATCTCTA</pcr_primer_p1>
		<pcr_primer_p2>GTCTAGAAAAACTGGCATTTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGAC</canonical_amplicon>
		<polymorphic_amplicon>CAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAAYTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4910</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>188997</contig_pos>
        <strand>+</strand>
        <context>GATATACATC[A/G]ATTCCTCTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATC</left_flank>
        <right_flank>ATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGACAGCAAAATAATTTTGTTCGGACAACGGACGGCCTGACCGGGGAACAACGGACTGTCCGTACATCTCTAGATGGGACCATGTTCGTCTTGTTGGGACTTTGGGACCCATGATCACACCATGACCAACTATCCCAATTTACGACCTCTCATATGGGATAGACCCTATAACTTACAACATCAACTGCTCCATGGAATAATCAGTGCACCAACTCAAGTCAATCTCAAAATTCCCAAATTCCAAACATGTATCGTTTCCCAACATATGAACGTCTTCAGGGAAAATCTGTTTCCTTTGATAGTCGGCAGTTTCAGATAGCTTTTCTAGACGAATCCAACCGAACCAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGACTATTCTGATATTGATAAGGTCTGCAGTTGATGGAGGGTGGCTGAAAAATAGTGAGTAAGAAGTTTCTAGCTCTATTTGAACCTGATGAAAAATCCAATTAGTCTTATTCACGAGGTAAGTCACATCTATAACGGTGTTTCTGAATGTAGCTTTATCGGGTTCACAGCACAAAATGAAGCTTGGTCGGCCCAGGAAATTTGATAAACTTTGCGGGGACGATGCTATGAAATTTTGGCGTTTTGAAAAATTGCTCGAGCAGGAGATCAAGTCGCGATTGTTTTGGAATTCTGTAAAAGTCAATTTTGAAGCTTTTATGGGTTTTGAGCACTCCGACCCCTAAGATAATCTACCCTTGAGGTACCGTATCCGTAAGATACTGTACCCTTGAGTTATCTTAATCCCTCTTC</canonical>
            <polymorphic>AGACAGCAAAATAATTTTGTTCGGACAACGGACGGCCTGACCGGGGAACAACGGACTGTCCGTACATCTCTAGATGGGACCATGTTCGTCTTGTTGGGACTTTGGGACCCATGATCACACCATGACCAACTATCCCAATTTACGACCTCTCATATGGGATAGACCCTATAACTTACAACATCAACTGCTCCATGGAATAATCAGTGCACCAACTCAAGTCAATCTCAAAATTCCCAAATTCCAAACATGTATCGTTTCCCAACATATGAACGTCTTCAGGGAAAATCTGTTTCCTTTGATAGTCGGCAGTTTCAGATAGCTTTTCTAGACGAATCCAACCGAACCAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCRATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGACTATTCTGATATTGATAAGGTCTGCAGTTGATGGAGGGTGGCTGAAAAATAGTGAGTAAGAAGTTTCTAGCTCTATTTGAACCTGATGAAAAATCCAATTAGTCTTATTCACGAGGTAAGTCACATCTATAACGGTGTTTCTGAATGTAGCTTTATCGGGTTCACAGCACAAAATGAAGCTTGGTCGGCCCAGGAAATTTGATAAACTTTGCGGGGACGATGCTATGAAATTTTGGCGTTTTGAAAAATTGCTCGAGCAGGAGATCAAGTCGCGATTGTTTTGGAATTCTGTAAAAGTCAATTTTGAAGCTTTTATGGGTTTTGAGCACTCCGACCCCTAAGATAATCTACCCTTGAGGTACCGTATCCGTAAGATACTGTACCCTTGAGTTATCTTAATCCCTCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>210 165 124 109 99 92 53 38 33 24 18 15 12 8</canonical_bands>
                <polymorphic_bands>210 165 124 109 99 92 77 38 33 18 15 12 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGGCGGTTTTTATTATCTCTA</pcr_primer_p1>
		<pcr_primer_p2>GTCTAGAAAAACTGGCATTTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGAC</canonical_amplicon>
		<polymorphic_amplicon>CAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCRATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4911</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>189013</contig_pos>
        <strand>+</strand>
        <context>TCTTTTCCCA[G/T]TCKTCTCAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCA</left_flank>
        <right_flank>TCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTCGGACAACGGACGGCCTGACCGGGGAACAACGGACTGTCCGTACATCTCTAGATGGGACCATGTTCGTCTTGTTGGGACTTTGGGACCCATGATCACACCATGACCAACTATCCCAATTTACGACCTCTCATATGGGATAGACCCTATAACTTACAACATCAACTGCTCCATGGAATAATCAGTGCACCAACTCAAGTCAATCTCAAAATTCCCAAATTCCAAACATGTATCGTTTCCCAACATATGAACGTCTTCAGGGAAAATCTGTTTCCTTTGATAGTCGGCAGTTTCAGATAGCTTTTCTAGACGAATCCAACCGAACCAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGACTATTCTGATATTGATAAGGTCTGCAGTTGATGGAGGGTGGCTGAAAAATAGTGAGTAAGAAGTTTCTAGCTCTATTTGAACCTGATGAAAAATCCAATTAGTCTTATTCACGAGGTAAGTCACATCTATAACGGTGTTTCTGAATGTAGCTTTATCGGGTTCACAGCACAAAATGAAGCTTGGTCGGCCCAGGAAATTTGATAAACTTTGCGGGGACGATGCTATGAAATTTTGGCGTTTTGAAAAATTGCTCGAGCAGGAGATCAAGTCGCGATTGTTTTGGAATTCTGTAAAAGTCAATTTTGAAGCTTTTATGGGTTTTGAGCACTCCGACCCCTAAGATAATCTACCCTTGAGGTACCGTATCCGTAAGATACTGTACCCTTGAGTTATCTTAATCCCTCTTCTACATACGAGTGACTG</canonical>
            <polymorphic>TTGTTCGGACAACGGACGGCCTGACCGGGGAACAACGGACTGTCCGTACATCTCTAGATGGGACCATGTTCGTCTTGTTGGGACTTTGGGACCCATGATCACACCATGACCAACTATCCCAATTTACGACCTCTCATATGGGATAGACCCTATAACTTACAACATCAACTGCTCCATGGAATAATCAGTGCACCAACTCAAGTCAATCTCAAAATTCCCAAATTCCAAACATGTATCGTTTCCCAACATATGAACGTCTTCAGGGAAAATCTGTTTCCTTTGATAGTCGGCAGTTTCAGATAGCTTTTCTAGACGAATCCAACCGAACCAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAKTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGACTATTCTGATATTGATAAGGTCTGCAGTTGATGGAGGGTGGCTGAAAAATAGTGAGTAAGAAGTTTCTAGCTCTATTTGAACCTGATGAAAAATCCAATTAGTCTTATTCACGAGGTAAGTCACATCTATAACGGTGTTTCTGAATGTAGCTTTATCGGGTTCACAGCACAAAATGAAGCTTGGTCGGCCCAGGAAATTTGATAAACTTTGCGGGGACGATGCTATGAAATTTTGGCGTTTTGAAAAATTGCTCGAGCAGGAGATCAAGTCGCGATTGTTTTGGAATTCTGTAAAAGTCAATTTTGAAGCTTTTATGGGTTTTGAGCACTCCGACCCCTAAGATAATCTACCCTTGAGGTACCGTATCCGTAAGATACTGTACCCTTGAGTTATCTTAATCCCTCTTCTACATACGAGTGACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGCGGTTTTTATTATCTCTA</pcr_primer_p1>
		<pcr_primer_p2>GTCTAGAAAAACTGGCATTTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGAC</canonical_amplicon>
		<polymorphic_amplicon>CAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAKTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4912</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>189016</contig_pos>
        <strand>+</strand>
        <context>TTTCCCAKTC[G/T]TCTCAATTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTC</left_flank>
        <right_flank>TCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGGACAACGGACGGCCTGACCGGGGAACAACGGACTGTCCGTACATCTCTAGATGGGACCATGTTCGTCTTGTTGGGACTTTGGGACCCATGATCACACCATGACCAACTATCCCAATTTACGACCTCTCATATGGGATAGACCCTATAACTTACAACATCAACTGCTCCATGGAATAATCAGTGCACCAACTCAAGTCAATCTCAAAATTCCCAAATTCCAAACATGTATCGTTTCCCAACATATGAACGTCTTCAGGGAAAATCTGTTTCCTTTGATAGTCGGCAGTTTCAGATAGCTTTTCTAGACGAATCCAACCGAACCAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGACTATTCTGATATTGATAAGGTCTGCAGTTGATGGAGGGTGGCTGAAAAATAGTGAGTAAGAAGTTTCTAGCTCTATTTGAACCTGATGAAAAATCCAATTAGTCTTATTCACGAGGTAAGTCACATCTATAACGGTGTTTCTGAATGTAGCTTTATCGGGTTCACAGCACAAAATGAAGCTTGGTCGGCCCAGGAAATTTGATAAACTTTGCGGGGACGATGCTATGAAATTTTGGCGTTTTGAAAAATTGCTCGAGCAGGAGATCAAGTCGCGATTGTTTTGGAATTCTGTAAAAGTCAATTTTGAAGCTTTTATGGGTTTTGAGCACTCCGACCCCTAAGATAATCTACCCTTGAGGTACCGTATCCGTAAGATACTGTACCCTTGAGTTATCTTAATCCCTCTTCTACATACGAGTGACTGACA</canonical>
            <polymorphic>TTCGGACAACGGACGGCCTGACCGGGGAACAACGGACTGTCCGTACATCTCTAGATGGGACCATGTTCGTCTTGTTGGGACTTTGGGACCCATGATCACACCATGACCAACTATCCCAATTTACGACCTCTCATATGGGATAGACCCTATAACTTACAACATCAACTGCTCCATGGAATAATCAGTGCACCAACTCAAGTCAATCTCAAAATTCCCAAATTCCAAACATGTATCGTTTCCCAACATATGAACGTCTTCAGGGAAAATCTGTTTCCTTTGATAGTCGGCAGTTTCAGATAGCTTTTCTAGACGAATCCAACCGAACCAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCKTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGACTATTCTGATATTGATAAGGTCTGCAGTTGATGGAGGGTGGCTGAAAAATAGTGAGTAAGAAGTTTCTAGCTCTATTTGAACCTGATGAAAAATCCAATTAGTCTTATTCACGAGGTAAGTCACATCTATAACGGTGTTTCTGAATGTAGCTTTATCGGGTTCACAGCACAAAATGAAGCTTGGTCGGCCCAGGAAATTTGATAAACTTTGCGGGGACGATGCTATGAAATTTTGGCGTTTTGAAAAATTGCTCGAGCAGGAGATCAAGTCGCGATTGTTTTGGAATTCTGTAAAAGTCAATTTTGAAGCTTTTATGGGTTTTGAGCACTCCGACCCCTAAGATAATCTACCCTTGAGGTACCGTATCCGTAAGATACTGTACCCTTGAGTTATCTTAATCCCTCTTCTACATACGAGTGACTGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGCGGTTTTTATTATCTCTA</pcr_primer_p1>
		<pcr_primer_p2>GTCTAGAAAAACTGGCATTTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGAC</canonical_amplicon>
		<polymorphic_amplicon>CAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCKTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4913</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>189053</contig_pos>
        <strand>+</strand>
        <context>GATGTTTTGT[C/T]CTCAACTCGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGT</left_flank>
        <right_flank>CTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGACTATTCTGATATTG</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCCGTACATCTCTAGATGGGACCATGTTCGTCTTGTTGGGACTTTGGGACCCATGATCACACCATGACCAACTATCCCAATTTACGACCTCTCATATGGGATAGACCCTATAACTTACAACATCAACTGCTCCATGGAATAATCAGTGCACCAACTCAAGTCAATCTCAAAATTCCCAAATTCCAAACATGTATCGTTTCCCAACATATGAACGTCTTCAGGGAAAATCTGTTTCCTTTGATAGTCGGCAGTTTCAGATAGCTTTTCTAGACGAATCCAACCGAACCAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGACTATTCTGATATTGATAAGGTCTGCAGTTGATGGAGGGTGGCTGAAAAATAGTGAGTAAGAAGTTTCTAGCTCTATTTGAACCTGATGAAAAATCCAATTAGTCTTATTCACGAGGTAAGTCACATCTATAACGGTGTTTCTGAATGTAGCTTTATCGGGTTCACAGCACAAAATGAAGCTTGGTCGGCCCAGGAAATTTGATAAACTTTGCGGGGACGATGCTATGAAATTTTGGCGTTTTGAAAAATTGCTCGAGCAGGAGATCAAGTCGCGATTGTTTTGGAATTCTGTAAAAGTCAATTTTGAAGCTTTTATGGGTTTTGAGCACTCCGACCCCTAAGATAATCTACCCTTGAGGTACCGTATCCGTAAGATACTGTACCCTTGAGTTATCTTAATCCCTCTTCTACATACGAGTGACTGACAGTGACAAAAATTTAAAACTCACTTTTCACGTCCATAC</canonical>
            <polymorphic>TGTCCGTACATCTCTAGATGGGACCATGTTCGTCTTGTTGGGACTTTGGGACCCATGATCACACCATGACCAACTATCCCAATTTACGACCTCTCATATGGGATAGACCCTATAACTTACAACATCAACTGCTCCATGGAATAATCAGTGCACCAACTCAAGTCAATCTCAAAATTCCCAAATTCCAAACATGTATCGTTTCCCAACATATGAACGTCTTCAGGGAAAATCTGTTTCCTTTGATAGTCGGCAGTTTCAGATAGCTTTTCTAGACGAATCCAACCGAACCAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTYCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGACTATTCTGATATTGATAAGGTCTGCAGTTGATGGAGGGTGGCTGAAAAATAGTGAGTAAGAAGTTTCTAGCTCTATTTGAACCTGATGAAAAATCCAATTAGTCTTATTCACGAGGTAAGTCACATCTATAACGGTGTTTCTGAATGTAGCTTTATCGGGTTCACAGCACAAAATGAAGCTTGGTCGGCCCAGGAAATTTGATAAACTTTGCGGGGACGATGCTATGAAATTTTGGCGTTTTGAAAAATTGCTCGAGCAGGAGATCAAGTCGCGATTGTTTTGGAATTCTGTAAAAGTCAATTTTGAAGCTTTTATGGGTTTTGAGCACTCCGACCCCTAAGATAATCTACCCTTGAGGTACCGTATCCGTAAGATACTGTACCCTTGAGTTATCTTAATCCCTCTTCTACATACGAGTGACTGACAGTGACAAAAATTTAAAACTCACTTTTCACGTCCATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTCGAAAACCATTCAAC</pcr_primer_p1>
		<pcr_primer_p2>ACTAATTGGATTTTTCATCAGGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGACTATTCTGATATTGATAAGGTCTGCAGTTGATGGAGGGTGGCTGAAAAATAGTGAGTAAGAAGTTTCTAGCTCTATTTGAACCTGATGAAAAATCCAATTAGT</canonical_amplicon>
		<polymorphic_amplicon>AAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTYCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGACTATTCTGATATTGATAAGGTCTGCAGTTGATGGAGGGTGGCTGAAAAATAGTGAGTAAGAAGTTTCTAGCTCTATTTGAACCTGATGAAAAATCCAATTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4914</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>189149</contig_pos>
        <strand>+</strand>
        <context>TAGTGAGTAA[A/G]AAGTTTCTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTGATAAGGTCTGCAGTTGATGGAGGGTGGCTGAAAAATAGTGAGTAA</left_flank>
        <right_flank>AAGTTTCTAGCTCTATTTGAACCTGATGAAAAATCCAATTAGTCTTATTC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGGGATAGACCCTATAACTTACAACATCAACTGCTCCATGGAATAATCAGTGCACCAACTCAAGTCAATCTCAAAATTCCCAAATTCCAAACATGTATCGTTTCCCAACATATGAACGTCTTCAGGGAAAATCTGTTTCCTTTGATAGTCGGCAGTTTCAGATAGCTTTTCTAGACGAATCCAACCGAACCAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGACTATTCTGATATTGATAAGGTCTGCAGTTGATGGAGGGTGGCTGAAAAATAGTGAGTAAGAAGTTTCTAGCTCTATTTGAACCTGATGAAAAATCCAATTAGTCTTATTCACGAGGTAAGTCACATCTATAACGGTGTTTCTGAATGTAGCTTTATCGGGTTCACAGCACAAAATGAAGCTTGGTCGGCCCAGGAAATTTGATAAACTTTGCGGGGACGATGCTATGAAATTTTGGCGTTTTGAAAAATTGCTCGAGCAGGAGATCAAGTCGCGATTGTTTTGGAATTCTGTAAAAGTCAATTTTGAAGCTTTTATGGGTTTTGAGCACTCCGACCCCTAAGATAATCTACCCTTGAGGTACCGTATCCGTAAGATACTGTACCCTTGAGTTATCTTAATCCCTCTTCTACATACGAGTGACTGACAGTGACAAAAATTTAAAACTCACTTTTCACGTCCATACCAGCTTCATAGCATTTTTTCAGCCTACATCTTTTACATTGAAATCTGCAACAGGGTGAGATTGTAAGGCTATTGTCTTTACGTGTCCCTCGTTTTT</canonical>
            <polymorphic>TATGGGATAGACCCTATAACTTACAACATCAACTGCTCCATGGAATAATCAGTGCACCAACTCAAGTCAATCTCAAAATTCCCAAATTCCAAACATGTATCGTTTCCCAACATATGAACGTCTTCAGGGAAAATCTGTTTCCTTTGATAGTCGGCAGTTTCAGATAGCTTTTCTAGACGAATCCAACCGAACCAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGACTATTCTGATATTGATAAGGTCTGCAGTTGATGGAGGGTGGCTGAAAAATAGTGAGTAARAAGTTTCTAGCTCTATTTGAACCTGATGAAAAATCCAATTAGTCTTATTCACGAGGTAAGTCACATCTATAACGGTGTTTCTGAATGTAGCTTTATCGGGTTCACAGCACAAAATGAAGCTTGGTCGGCCCAGGAAATTTGATAAACTTTGCGGGGACGATGCTATGAAATTTTGGCGTTTTGAAAAATTGCTCGAGCAGGAGATCAAGTCGCGATTGTTTTGGAATTCTGTAAAAGTCAATTTTGAAGCTTTTATGGGTTTTGAGCACTCCGACCCCTAAGATAATCTACCCTTGAGGTACCGTATCCGTAAGATACTGTACCCTTGAGTTATCTTAATCCCTCTTCTACATACGAGTGACTGACAGTGACAAAAATTTAAAACTCACTTTTCACGTCCATACCAGCTTCATAGCATTTTTTCAGCCTACATCTTTTACATTGAAATCTGCAACAGGGTGAGATTGTAAGGCTATTGTCTTTACGTGTCCCTCGTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCTCTTAAAAACGACTGC</pcr_primer_p1>
		<pcr_primer_p2>TGACTTACCTCGTGAATAAGACT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGACTATTCTGATATTGATAAGGTCTGCAGTTGATGGAGGGTGGCTGAAAAATAGTGAGTAAGAAGTTTCTAGCTCTATTTGAACCTGATGAAAAATCCAATTAGTCTTATTCACGAGGTAAGTCA</canonical_amplicon>
		<polymorphic_amplicon>CAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGACTATTCTGATATTGATAAGGTCTGCAGTTGATGGAGGGTGGCTGAAAAATAGTGAGTAARAAGTTTCTAGCTCTATTTGAACCTGATGAAAAATCCAATTAGTCTTATTCACGAGGTAAGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4915</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>189229</contig_pos>
        <strand>+</strand>
        <context>TAACGGTGTT[G/T]CTGAATGTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAATCCAATTAGTCTTATTCACGAGGTAAGTCACATCTATAACGGTGTT</left_flank>
        <right_flank>CTGAATGTAGCTTTATCGGGTTCACAGCACAAAATGAAGCTTGGTCGGCC</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCAAATTCCAAACATGTATCGTTTCCCAACATATGAACGTCTTCAGGGAAAATCTGTTTCCTTTGATAGTCGGCAGTTTCAGATAGCTTTTCTAGACGAATCCAACCGAACCAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGACTATTCTGATATTGATAAGGTCTGCAGTTGATGGAGGGTGGCTGAAAAATAGTGAGTAAGAAGTTTCTAGCTCTATTTGAACCTGATGAAAAATCCAATTAGTCTTATTCACGAGGTAAGTCACATCTATAACGGTGTTTCTGAATGTAGCTTTATCGGGTTCACAGCACAAAATGAAGCTTGGTCGGCCCAGGAAATTTGATAAACTTTGCGGGGACGATGCTATGAAATTTTGGCGTTTTGAAAAATTGCTCGAGCAGGAGATCAAGTCGCGATTGTTTTGGAATTCTGTAAAAGTCAATTTTGAAGCTTTTATGGGTTTTGAGCACTCCGACCCCTAAGATAATCTACCCTTGAGGTACCGTATCCGTAAGATACTGTACCCTTGAGTTATCTTAATCCCTCTTCTACATACGAGTGACTGACAGTGACAAAAATTTAAAACTCACTTTTCACGTCCATACCAGCTTCATAGCATTTTTTCAGCCTACATCTTTTACATTGAAATCTGCAACAGGGTGAGATTGTAAGGCTATTGTCTTTACGTGTCCCTCGTTTTTGAGGGTTCCATATTTTTCCCAGGCTATCCTAGACTGGTTGAAACCTTTCAAACTTCTTGGGACCCACAAGACTAAGTCAG</canonical>
            <polymorphic>CCCAAATTCCAAACATGTATCGTTTCCCAACATATGAACGTCTTCAGGGAAAATCTGTTTCCTTTGATAGTCGGCAGTTTCAGATAGCTTTTCTAGACGAATCCAACCGAACCAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGACTATTCTGATATTGATAAGGTCTGCAGTTGATGGAGGGTGGCTGAAAAATAGTGAGTAAGAAGTTTCTAGCTCTATTTGAACCTGATGAAAAATCCAATTAGTCTTATTCACGAGGTAAGTCACATCTATAACGGTGTTKCTGAATGTAGCTTTATCGGGTTCACAGCACAAAATGAAGCTTGGTCGGCCCAGGAAATTTGATAAACTTTGCGGGGACGATGCTATGAAATTTTGGCGTTTTGAAAAATTGCTCGAGCAGGAGATCAAGTCGCGATTGTTTTGGAATTCTGTAAAAGTCAATTTTGAAGCTTTTATGGGTTTTGAGCACTCCGACCCCTAAGATAATCTACCCTTGAGGTACCGTATCCGTAAGATACTGTACCCTTGAGTTATCTTAATCCCTCTTCTACATACGAGTGACTGACAGTGACAAAAATTTAAAACTCACTTTTCACGTCCATACCAGCTTCATAGCATTTTTTCAGCCTACATCTTTTACATTGAAATCTGCAACAGGGTGAGATTGTAAGGCTATTGTCTTTACGTGTCCCTCGTTTTTGAGGGTTCCATATTTTTCCCAGGCTATCCTAGACTGGTTGAAACCTTTCAAACTTCTTGGGACCCACAAGACTAAGTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>308 190 157 135 82 67 61</canonical_bands>
                <polymorphic_bands>325 308 157 82 67 61</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTTGAACCTGATGAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAACCCATAAAAGCTTCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATTTGAACCTGATGAAAAATCCAATTAGTCTTATTCACGAGGTAAGTCACATCTATAACGGTGTTTCTGAATGTAGCTTTATCGGGTTCACAGCACAAAATGAAGCTTGGTCGGCCCAGGAAATTTGATAAACTTTGCGGGGACGATGCTATGAAATTTTGGCGTTTTGAAAAATTGCTCGAGCAGGAGATCAAGTCGCGATTGTTTTGGAATTCTGTAAAAGTCAATTTTGAAGCTTTTATGGGTTT</canonical_amplicon>
		<polymorphic_amplicon>CTATTTGAACCTGATGAAAAATCCAATTAGTCTTATTCACGAGGTAAGTCACATCTATAACGGTGTTKCTGAATGTAGCTTTATCGGGTTCACAGCACAAAATGAAGCTTGGTCGGCCCAGGAAATTTGATAAACTTTGCGGGGACGATGCTATGAAATTTTGGCGTTTTGAAAAATTGCTCGAGCAGGAGATCAAGTCGCGATTGTTTTGGAATTCTGTAAAAGTCAATTTTGAAGCTTTTATGGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4917</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>191104</contig_pos>
        <strand>+</strand>
        <context>AAAATTATTY[C/T]TCCGCCGCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTC</left_flank>
        <right_flank>TCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTCAGAATATCAGAATCCAGGAATCCGGGATTCTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTATATTGGTTCCTGTGAGAGATGCCTAAAGGAGGCCAGACACCAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGAGCCGCTACCGGCTGAGCTACGAGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGACGTGATTTCGTCCCCCGAACTGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAACTGATAAAATGTTTGTCATAAGATTTGCAACATTTTAACAGTTTACAGATTTTTATTATCTCTTGCAGTAACCAAGATAATCG</canonical>
            <polymorphic>ATCTCAGAATATCAGAATCCAGGAATCCGGGATTCTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCYTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTATATTGGTTCCTGTGAGAGATGCCTAAAGGAGGCCAGACACCAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGAGCCGCTACCGGCTGAGCTACGAGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGACGTGATTTCGTCCCCCGAACTGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAACTGATAAAATGTTTGTCATAAGATTTGCAACATTTTAACAGTTTACAGATTTTTATTATCTCTTGCAGTAACCAAGATAATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCAAATCCAAAAACACATC</pcr_primer_p1>
		<pcr_primer_p2>CACAGGAACCAATATAGTTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTATATTGGTTCCTGTG</canonical_amplicon>
		<polymorphic_amplicon>CTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCYTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTATATTGGTTCCTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4921</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>364667</contig_pos>
        <strand>+</strand>
        <context>AATGGAAATG[C/T]GGGATGTATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGAAAGAAAGCGGCCGTATCGTTTACAAAAACTGGAGATAATGGAAATG</left_flank>
        <right_flank>GGGATGTATGAAAAACGGAAAGACCAACAATACCAGCAATTCCGATGGTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCCAGCCGCCTGATTATGTTCATCATTGCCATCCTCTACACCAACACCAAGTACCTCATTTTCCTCCGCATTTTACCAAATTTCATCCAATTCAACTTCACTTCTTTCGTCAGCCTTCACAGATGCCTTGCGGTCAATGTTATCGATTTGGTTATGCTTCTCCTAACCCTAATTATCATTTTTGTCTACCTCCAACTCTCCACCGGACCATTAACTTTTGAGCAATCAGTGGTGATTTTTGAAACGGTTTGCTTGACAATATTAAAAATAGCTGGATTGATAATGGATATGATCTCTATTGGAATGTTTCGAAAAATGCACGAACACCATTTTCTGATTACCGGAGTGAATACGGAGACGATGCTCAGGAAGAACTACGAATTCACTCAGATGATCATTCCTTATCTTTTTATTATTTGTGGTTTCTTCATCAAGCTGGAGGAGGTTAGAAAGAAAGCGGCCGTATCGTTTACAAAAACTGGAGATAATGGAAATGTGGGATGTATGAAAAACGGAAAGACCAACAATACCAGCAATTCCGATGGTGCTCCGATTGGAGCTGCACCAGTAGCTGACCCAAAAGTTTGATACCTCTATTCTAATTTCACATATCATTTATCTGTATATACTGGAAGTATTTTTCTATTTTCTCTGAAATGAAATATTCTGACCTAAACAATAACTTTTTATAAGTTTCAGGTGTTTTCTGGAATCTGAAAGAACTTTCCAAGTGTCAATAAAACATTATGAAAAAGGTGAAAAGATATTTTATCAGAAAAGGAAAAAATATATATACAGATAGATTTCAAAATTTTTTAATTGTCCAGTGTTACATAGCAAAAGCATGACAATTATGTTCATTCTTTCTGGCAACACAGTAGGATGTATCGGCACGGACGGTGAACACAAATGGGTTCTAAAAATAATATTTAATTTCAACCTGAAGCAAAAAATCACCTCAGAGCACACCACGACAAATCTATTAAGCTGCTTGGCT</canonical>
            <polymorphic>TTTTCCAGCCGCCTGATTATGTTCATCATTGCCATCCTCTACACCAACACCAAGTACCTCATTTTCCTCCGCATTTTACCAAATTTCATCCAATTCAACTTCACTTCTTTCGTCAGCCTTCACAGATGCCTTGCGGTCAATGTTATCGATTTGGTTATGCTTCTCCTAACCCTAATTATCATTTTTGTCTACCTCCAACTCTCCACCGGACCATTAACTTTTGAGCAATCAGTGGTGATTTTTGAAACGGTTTGCTTGACAATATTAAAAATAGCTGGATTGATAATGGATATGATCTCTATTGGAATGTTTCGAAAAATGCACGAACACCATTTTCTGATTACCGGAGTGAATACGGAGACGATGCTCAGGAAGAACTACGAATTCACTCAGATGATCATTCCTTATCTTTTTATTATTTGTGGTTTCTTCATCAAGCTGGAGGAGGTTAGAAAGAAAGCGGCCGTATCGTTTACAAAAACTGGAGATAATGGAAATGYGGGATGTATGAAAAACGGAAAGACCAACAATACCAGCAATTCCGATGGTGCTCCGATTGGAGCTGCACCAGTAGCTGACCCAAAAGTTTGATACCTCTATTCTAATTTCACATATCATTTATCTGTATATACTGGAAGTATTTTTCTATTTTCTCTGAAATGAAATATTCTGACCTAAACAATAACTTTTTATAAGTTTCAGGTGTTTTCTGGAATCTGAAAGAACTTTCCAAGTGTCAATAAAACATTATGAAAAAGGTGAAAAGATATTTTATCAGAAAAGGAAAAAATATATATACAGATAGATTTCAAAATTTTTTAATTGTCCAGTGTTACATAGCAAAAGCATGACAATTATGTTCATTCTTTCTGGCAACACAGTAGGATGTATCGGCACGGACGGTGAACACAAATGGGTTCTAAAAATAATATTTAATTTCAACCTGAAGCAAAAAATCACCTCAGAGCACACCACGACAAATCTATTAAGCTGCTTGGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>95 86 83 77 71 54 50 49 46 43 43 37 36 31 29 26 25 22 19 18 17 10 9 6 6 4 3 3 2</canonical_bands>
                <polymorphic_bands>126 95 86 83 71 54 50 46 43 43 37 36 31 29 26 25 22 19 18 17 10 9 6 6 4 3 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGAACTACGAATTCACTCAGA</pcr_primer_p1>
		<pcr_primer_p2>AATGATATGTGAAATTAGAATAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAGAACTACGAATTCACTCAGATGATCATTCCTTATCTTTTTATTATTTGTGGTTTCTTCATCAAGCTGGAGGAGGTTAGAAAGAAAGCGGCCGTATCGTTTACAAAAACTGGAGATAATGGAAATGTGGGATGTATGAAAAACGGAAAGACCAACAATACCAGCAATTCCGATGGTGCTCCGATTGGAGCTGCACCAGTAGCTGACCCAAAAGTTTGATACCTCTATTCTAATTTCACATATCATT</canonical_amplicon>
		<polymorphic_amplicon>GAAGAACTACGAATTCACTCAGATGATCATTCCTTATCTTTTTATTATTTGTGGTTTCTTCATCAAGCTGGAGGAGGTTAGAAAGAAAGCGGCCGTATCGTTTACAAAAACTGGAGATAATGGAAATGYGGGATGTATGAAAAACGGAAAGACCAACAATACCAGCAATTCCGATGGTGCTCCGATTGGAGCTGCACCAGTAGCTGACCCAAAAGTTTGATACCTCTATTCTAATTTCACATATCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4922</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>364631</contig_pos>
        <strand>+</strand>
        <context>AAGAAAGCGG[C/T]CGTATCGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTATTTGTGGTTTCTTCATCAAGCTGGAGGAGGTTAGAAAGAAAGCGG</left_flank>
        <right_flank>CGTATCGTTTACAAAAACTGGAGATAATGGAAATGTGGGATGTATGAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTATGAAAATCTCCAGGACTTTCAACCAACCCATTTTCCAGCCGCCTGATTATGTTCATCATTGCCATCCTCTACACCAACACCAAGTACCTCATTTTCCTCCGCATTTTACCAAATTTCATCCAATTCAACTTCACTTCTTTCGTCAGCCTTCACAGATGCCTTGCGGTCAATGTTATCGATTTGGTTATGCTTCTCCTAACCCTAATTATCATTTTTGTCTACCTCCAACTCTCCACCGGACCATTAACTTTTGAGCAATCAGTGGTGATTTTTGAAACGGTTTGCTTGACAATATTAAAAATAGCTGGATTGATAATGGATATGATCTCTATTGGAATGTTTCGAAAAATGCACGAACACCATTTTCTGATTACCGGAGTGAATACGGAGACGATGCTCAGGAAGAACTACGAATTCACTCAGATGATCATTCCTTATCTTTTTATTATTTGTGGTTTCTTCATCAAGCTGGAGGAGGTTAGAAAGAAAGCGGCCGTATCGTTTACAAAAACTGGAGATAATGGAAATGTGGGATGTATGAAAAACGGAAAGACCAACAATACCAGCAATTCCGATGGTGCTCCGATTGGAGCTGCACCAGTAGCTGACCCAAAAGTTTGATACCTCTATTCTAATTTCACATATCATTTATCTGTATATACTGGAAGTATTTTTCTATTTTCTCTGAAATGAAATATTCTGACCTAAACAATAACTTTTTATAAGTTTCAGGTGTTTTCTGGAATCTGAAAGAACTTTCCAAGTGTCAATAAAACATTATGAAAAAGGTGAAAAGATATTTTATCAGAAAAGGAAAAAATATATATACAGATAGATTTCAAAATTTTTTAATTGTCCAGTGTTACATAGCAAAAGCATGACAATTATGTTCATTCTTTCTGGCAACACAGTAGGATGTATCGGCACGGACGGTGAACACAAATGGGTTCTAAAAATAATATTTAATTTCAACCTGAAGCAAAAAATCACCTCA</canonical>
            <polymorphic>AATTTATGAAAATCTCCAGGACTTTCAACCAACCCATTTTCCAGCCGCCTGATTATGTTCATCATTGCCATCCTCTACACCAACACCAAGTACCTCATTTTCCTCCGCATTTTACCAAATTTCATCCAATTCAACTTCACTTCTTTCGTCAGCCTTCACAGATGCCTTGCGGTCAATGTTATCGATTTGGTTATGCTTCTCCTAACCCTAATTATCATTTTTGTCTACCTCCAACTCTCCACCGGACCATTAACTTTTGAGCAATCAGTGGTGATTTTTGAAACGGTTTGCTTGACAATATTAAAAATAGCTGGATTGATAATGGATATGATCTCTATTGGAATGTTTCGAAAAATGCACGAACACCATTTTCTGATTACCGGAGTGAATACGGAGACGATGCTCAGGAAGAACTACGAATTCACTCAGATGATCATTCCTTATCTTTTTATTATTTGTGGTTTCTTCATCAAGCTGGAGGAGGTTAGAAAGAAAGCGGYCGTATCGTTTACAAAAACTGGAGATAATGGAAATGTGGGATGTATGAAAAACGGAAAGACCAACAATACCAGCAATTCCGATGGTGCTCCGATTGGAGCTGCACCAGTAGCTGACCCAAAAGTTTGATACCTCTATTCTAATTTCACATATCATTTATCTGTATATACTGGAAGTATTTTTCTATTTTCTCTGAAATGAAATATTCTGACCTAAACAATAACTTTTTATAAGTTTCAGGTGTTTTCTGGAATCTGAAAGAACTTTCCAAGTGTCAATAAAACATTATGAAAAAGGTGAAAAGATATTTTATCAGAAAAGGAAAAAATATATATACAGATAGATTTCAAAATTTTTTAATTGTCCAGTGTTACATAGCAAAAGCATGACAATTATGTTCATTCTTTCTGGCAACACAGTAGGATGTATCGGCACGGACGGTGAACACAAATGGGTTCTAAAAATAATATTTAATTTCAACCTGAAGCAAAAAATCACCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CGGCCG</site>
                <isoschizomers>
                    <enzyme>BseX3I</enzyme>
                    <enzyme>BstZI</enzyme>
                    <enzyme>EagI</enzyme>
                    <enzyme>EclXI</enzyme>
                    <enzyme>Eco52I</enzyme>
                    <enzyme>XmaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>452 399 102 47</canonical_bands>
                <polymorphic_bands>554 399 47</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>390 164 158 108 99 44 25 12</canonical_bands>
                <polymorphic_bands>390 164 158 124 108 44 12</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>501 452 47</canonical_bands>
                <polymorphic_bands>953 47</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGATTGATAATGGATATGATCT</pcr_primer_p1>
		<pcr_primer_p2>GTCTTTCCGTTTTTCATACATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGGATTGATAATGGATATGATCTCTATTGGAATGTTTCGAAAAATGCACGAACACCATTTTCTGATTACCGGAGTGAATACGGAGACGATGCTCAGGAAGAACTACGAATTCACTCAGATGATCATTCCTTATCTTTTTATTATTTGTGGTTTCTTCATCAAGCTGGAGGAGGTTAGAAAGAAAGCGGCCGTATCGTTTACAAAAACTGGAGATAATGGAAATGTGGGATGTATGAAAAACGGAAAGAC</canonical_amplicon>
		<polymorphic_amplicon>TGGATTGATAATGGATATGATCTCTATTGGAATGTTTCGAAAAATGCACGAACACCATTTTCTGATTACCGGAGTGAATACGGAGACGATGCTCAGGAAGAACTACGAATTCACTCAGATGATCATTCCTTATCTTTTTATTATTTGTGGTTTCTTCATCAAGCTGGAGGAGGTTAGAAAGAAAGCGGYCGTATCGTTTACAAAAACTGGAGATAATGGAAATGTGGGATGTATGAAAAACGGAAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4923</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>364522</contig_pos>
        <strand>+</strand>
        <context>CGGAGTGAAT[A/T]CGGAGACGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAATGTTTCGAAAAATGCACGAACACCATTTTCTGATTACCGGAGTGAAT</left_flank>
        <right_flank>CGGAGACGATGCTCAGGAAGAACTACGAATTCACTCAGATGATCATTCCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACATCTTCTGAACCACCATGCAATCTTNNNNNNNNNNCAGCCGAGCTCCAGACTCTTGAAAACGGTATATGAAAGCCACGCGCTAATTCATACCGTAACTCCAAAAAAAATTTATGAAAATCTCCAGGACTTTCAACCAACCCATTTTCCAGCCGCCTGATTATGTTCATCATTGCCATCCTCTACACCAACACCAAGTACCTCATTTTCCTCCGCATTTTACCAAATTTCATCCAATTCAACTTCACTTCTTTCGTCAGCCTTCACAGATGCCTTGCGGTCAATGTTATCGATTTGGTTATGCTTCTCCTAACCCTAATTATCATTTTTGTCTACCTCCAACTCTCCACCGGACCATTAACTTTTGAGCAATCAGTGGTGATTTTTGAAACGGTTTGCTTGACAATATTAAAAATAGCTGGATTGATAATGGATATGATCTCTATTGGAATGTTTCGAAAAATGCACGAACACCATTTTCTGATTACCGGAGTGAATACGGAGACGATGCTCAGGAAGAACTACGAATTCACTCAGATGATCATTCCTTATCTTTTTATTATTTGTGGTTTCTTCATCAAGCTGGAGGAGGTTAGAAAGAAAGCGGCCGTATCGTTTACAAAAACTGGAGATAATGGAAATGTGGGATGTATGAAAAACGGAAAGACCAACAATACCAGCAATTCCGATGGTGCTCCGATTGGAGCTGCACCAGTAGCTGACCCAAAAGTTTGATACCTCTATTCTAATTTCACATATCATTTATCTGTATATACTGGAAGTATTTTTCTATTTTCTCTGAAATGAAATATTCTGACCTAAACAATAACTTTTTATAAGTTTCAGGTGTTTTCTGGAATCTGAAAGAACTTTCCAAGTGTCAATAAAACATTATGAAAAAGGTGAAAAGATATTTTATCAGAAAAGGAAAAAATATATATACAGATAGATTTCAAAATTTTTTAATTGTCCAGTGTTACATAGCAAAAGCATGACAAT</canonical>
            <polymorphic>AACATCTTCTGAACCACCATGCAATCTTNNNNNNNNNNCAGCCGAGCTCCAGACTCTTGAAAACGGTATATGAAAGCCACGCGCTAATTCATACCGTAACTCCAAAAAAAATTTATGAAAATCTCCAGGACTTTCAACCAACCCATTTTCCAGCCGCCTGATTATGTTCATCATTGCCATCCTCTACACCAACACCAAGTACCTCATTTTCCTCCGCATTTTACCAAATTTCATCCAATTCAACTTCACTTCTTTCGTCAGCCTTCACAGATGCCTTGCGGTCAATGTTATCGATTTGGTTATGCTTCTCCTAACCCTAATTATCATTTTTGTCTACCTCCAACTCTCCACCGGACCATTAACTTTTGAGCAATCAGTGGTGATTTTTGAAACGGTTTGCTTGACAATATTAAAAATAGCTGGATTGATAATGGATATGATCTCTATTGGAATGTTTCGAAAAATGCACGAACACCATTTTCTGATTACCGGAGTGAATWCGGAGACGATGCTCAGGAAGAACTACGAATTCACTCAGATGATCATTCCTTATCTTTTTATTATTTGTGGTTTCTTCATCAAGCTGGAGGAGGTTAGAAAGAAAGCGGCCGTATCGTTTACAAAAACTGGAGATAATGGAAATGTGGGATGTATGAAAAACGGAAAGACCAACAATACCAGCAATTCCGATGGTGCTCCGATTGGAGCTGCACCAGTAGCTGACCCAAAAGTTTGATACCTCTATTCTAATTTCACATATCATTTATCTGTATATACTGGAAGTATTTTTCTATTTTCTCTGAAATGAAATATTCTGACCTAAACAATAACTTTTTATAAGTTTCAGGTGTTTTCTGGAATCTGAAAGAACTTTCCAAGTGTCAATAAAACATTATGAAAAAGGTGAAAAGATATTTTATCAGAAAAGGAAAAAATATATATACAGATAGATTTCAAAATTTTTTAATTGTCCAGTGTTACATAGCAAAAGCATGACAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGATTGATAATGGATATGATCT</pcr_primer_p1>
		<pcr_primer_p2>GTCTTTCCGTTTTTCATACATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGGATTGATAATGGATATGATCTCTATTGGAATGTTTCGAAAAATGCACGAACACCATTTTCTGATTACCGGAGTGAATACGGAGACGATGCTCAGGAAGAACTACGAATTCACTCAGATGATCATTCCTTATCTTTTTATTATTTGTGGTTTCTTCATCAAGCTGGAGGAGGTTAGAAAGAAAGCGGCCGTATCGTTTACAAAAACTGGAGATAATGGAAATGTGGGATGTATGAAAAACGGAAAGAC</canonical_amplicon>
		<polymorphic_amplicon>TGGATTGATAATGGATATGATCTCTATTGGAATGTTTCGAAAAATGCACGAACACCATTTTCTGATTACCGGAGTGAATWCGGAGACGATGCTCAGGAAGAACTACGAATTCACTCAGATGATCATTCCTTATCTTTTTATTATTTGTGGTTTCTTCATCAAGCTGGAGGAGGTTAGAAAGAAAGCGGCCGTATCGTTTACAAAAACTGGAGATAATGGAAATGTGGGATGTATGAAAAACGGAAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4924</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>364266</contig_pos>
        <strand>+</strand>
        <context>TYCAATTCAA[C/T]TTCACTTCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCAAGTACCTCATTTTCCTCCGCATTTTACCAAATTTCATCCAATTCAA</left_flank>
        <right_flank>TTCACTTCTTTCGTCAGCCTTCACAGATGCCTTGCGGTCAATGTTATCGA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGATTTGTTTTGCGTAGTAAATCTTCTTGAATAGTTAAAGATGTGTCACTGCCGGTGGAGCTACGCAGACGCAAATTTGGTTTAACAAGCCATTTGAAAAATGTAAAGCATACCAAGATTGGAAACTTTGGATTTATAGAGTTTTTGAATTTTCCTAGTTTCAGCTATNAAGCTTAAGGAACTATTTGGGCTGTAAACTTTAAACCGATATCTAGGTATTTAAGCATGTCATGATGACACCTTCTCCAACCCATCAACATCTTCTGAACCACCATGCAATCTTNNNNNNNNNNCAGCCGAGCTCCAGACTCTTGAAAACGGTATATGAAAGCCACGCGCTAATTCATACCGTAACTCCAAAAAAAATTTATGAAAATCTCCAGGACTTTCAACCAACCCATTTTCCAGCCGCCTGATTATGTTCATCATTGCCATCCTCTACACCAACACCAAGTACCTCATTTTCCTCCGCATTTTACCAAATTTCATCCAATTCAACTTCACTTCTTTCGTCAGCCTTCACAGATGCCTTGCGGTCAATGTTATCGATTTGGTTATGCTTCTCCTAACCCTAATTATCATTTTTGTCTACCTCCAACTCTCCACCGGACCATTAACTTTTGAGCAATCAGTGGTGATTTTTGAAACGGTTTGCTTGACAATATTAAAAATAGCTGGATTGATAATGGATATGATCTCTATTGGAATGTTTCGAAAAATGCACGAACACCATTTTCTGATTACCGGAGTGAATACGGAGACGATGCTCAGGAAGAACTACGAATTCACTCAGATGATCATTCCTTATCTTTTTATTATTTGTGGTTTCTTCATCAAGCTGGAGGAGGTTAGAAAGAAAGCGGCCGTATCGTTTACAAAAACTGGAGATAATGGAAATGTGGGATGTATGAAAAACGGAAAGACCAACAATACCAGCAATTCCGATGGTGCTCCGATTGGAGCTGCACCAGTAGCTGACCCAAAAGTTTGATACCTCTA</canonical>
            <polymorphic>AAGATTTGTTTTGCGTAGTAAATCTTCTTGAATAGTTAAAGATGTGTCACTGCCGGTGGAGCTACGCAGACGCAAATTTGGTTTAACAAGCCATTTGAAAAATGTAAAGCATACCAAGATTGGAAACTTTGGATTTATAGAGTTTTTGAATTTTCCTAGTTTCAGCTATNAAGCTTAAGGAACTATTTGGGCTGTAAACTTTAAACCGATATCTAGGTATTTAAGCATGTCATGATGACACCTTCTCCAACCCATCAACATCTTCTGAACCACCATGCAATCTTNNNNNNNNNNCAGCCGAGCTCCAGACTCTTGAAAACGGTATATGAAAGCCACGCGCTAATTCATACCGTAACTCCAAAAAAAATTTATGAAAATCTCCAGGACTTTCAACCAACCCATTTTCCAGCCGCCTGATTATGTTCATCATTGCCATCCTCTACACCAACACCAAGTACCTCATTTTCCTCCGCATTTTACCAAATTTCATCCAATTCAAYTTCACTTCTTTCGTCAGCCTTCACAGATGCCTTGCGGTCAATGTTATCGATTTGGTTATGCTTCTCCTAACCCTAATTATCATTTTTGTCTACCTCCAACTCTCCACCGGACCATTAACTTTTGAGCAATCAGTGGTGATTTTTGAAACGGTTTGCTTGACAATATTAAAAATAGCTGGATTGATAATGGATATGATCTCTATTGGAATGTTTCGAAAAATGCACGAACACCATTTTCTGATTACCGGAGTGAATACGGAGACGATGCTCAGGAAGAACTACGAATTCACTCAGATGATCATTCCTTATCTTTTTATTATTTGTGGTTTCTTCATCAAGCTGGAGGAGGTTAGAAAGAAAGCGGCCGTATCGTTTACAAAAACTGGAGATAATGGAAATGTGGGATGTATGAAAAACGGAAAGACCAACAATACCAGCAATTCCGATGGTGCTCCGATTGGAGCTGCACCAGTAGCTGACCCAAAAGTTTGATACCTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTTGAAAACGGTATATGAAAG</pcr_primer_p1>
		<pcr_primer_p2>ATAACCAAATCGATAACATTGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTTGAAAACGGTATATGAAAGCCACGCGCTAATTCATACCGTAACTCCAAAAAAAATTTATGAAAATCTCCAGGACTTTCAACCAACCCATTTTCCAGCCGCCTGATTATGTTCATCATTGCCATCCTCTACACCAACACCAAGTACCTCATTTTCCTCCGCATTTTACCAAATTTCATCCAATTCAACTTCACTTCTTTCGTCAGCCTTCACAGATGCCTTGCGGTCAATGTTATCGATTTGGTTAT</canonical_amplicon>
		<polymorphic_amplicon>CTCTTGAAAACGGTATATGAAAGCCACGCGCTAATTCATACCGTAACTCCAAAAAAAATTTATGAAAATCTCCAGGACTTTCAACCAACCCATTTTCCAGCCGCCTGATTATGTTCATCATTGCCATCCTCTACACCAACACCAAGTACCTCATTTTCCTCCGCATTTTACCAAATTTCATCCAATTCAAYTTCACTTCTTTCGTCAGCCTTCACAGATGCCTTGCGGTCAATGTTATCGATTTGGTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4925</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>381903</contig_pos>
        <strand>+</strand>
        <context>tcaaaatGCA[C/T]GGATAGGGTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAGAAGGCTTGTCTCTTATAGGAACCGAAATAATTGAGCTCAAAATGCA</left_flank>
        <right_flank>GGATAGGGTGGGCTTATACTATTAGATCATTCCAGGTTTCTCAAAAAAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGCCTATGATCAAAATGTAATAACCTCTACCGGATCAGCTACGCGATCAGGAAGTTGACCGACGCTGAAAGAGGCTGACTGCGATGGTTAGCACAAATATCTCTTTCCCTTGAAAAGATATTAAAGTATTTGAACAGATAAATTGTTTATTTTGGTATCTTCCTTATATATAAAACGCCTGACGCGTCTGTCGGTTCTATTGTCAGGCTGTCCGGTTTTGGGTTTCTGAATGAAAGGTTGGCCGCCGCCAAAACCGAACCCGCGGCCTTCCGCACAATAGCCGCTCACGCACACAGCTGCGCCATGAGGGCCACACTAGGAGAGGGGAGGGAGGGCGTATATGTTCTACAGCGTGAGAAAAAAATCGAAAAGTGAGGAGTGGAGCGATGAATAATTAAAAATGTTGAATTGCGCCGAAGGCGCAACAGCCAGCTGTTTGAAGCGGCAAACAGAAGGCTTGTCTCTTATAGGAACCGAAATAATTGAGCTCAAAATGCACGGATAGGGTGGGCTTATACTATTAGATCATTCCAGGTTTCTCAAAAAAATCATAATTCCAGTGACTACGATCAACCGACAGCGAATCAACTAGCTTACTATCTCAAAGAAAATGGTGTCACCATCATCACAGTTGCAAATATGGATGACGTGAGTACAGAGCCTTCATTCTACCAACAATTCTTTTTTTCAGTCCAACAAAATCATGAAACTGAAAGCCCTTGCAAGCGAAGGTTATGGGTTCTCCTTATCCGATGAAAACTTGACGGCGGGAATTCAAAAAGGCCTTTGTGATGCCAACTGCTTCTGTCCAGAAGGGTATCATCAATTCATGTATCCTGAGAATAACACCACTCGTAAATTTGGGTCATGTATTGAGGCAATGTTTGTCGAGAGACACTGGTCCGAGGCAAGACTAACTTGCCAGAATCGCAACCAACAAGGATATCTGGCCACTGAGTTTAGTATTGAAAAGGCGTTGTTCAATCAAGGTGAGCATTT</canonical>
            <polymorphic>CTGCCTATGATCAAAATGTAATAACCTCTACCGGATCAGCTACGCGATCAGGAAGTTGACCGACGCTGAAAGAGGCTGACTGCGATGGTTAGCACAAATATCTCTTTCCCTTGAAAAGATATTAAAGTATTTGAACAGATAAATTGTTTATTTTGGTATCTTCCTTATATATAAAACGCCTGACGCGTCTGTCGGTTCTATTGTCAGGCTGTCCGGTTTTGGGTTTCTGAATGAAAGGTTGGCCGCCGCCAAAACCGAACCCGCGGCCTTCCGCACAATAGCCGCTCACGCACACAGCTGCGCCATGAGGGCCACACTAGGAGAGGGGAGGGAGGGCGTATATGTTCTACAGCGTGAGAAAAAAATCGAAAAGTGAGGAGTGGAGCGATGAATAATTAAAAATGTTGAATTGCGCCGAAGGCGCAACAGCCAGCTGTTTGAAGCGGCAAACAGAAGGCTTGTCTCTTATAGGAACCGAAATAATTGAGCTCAAAATGCAYGGATAGGGTGGGCTTATACTATTAGATCATTCCAGGTTTCTCAAAAAAATCATAATTCCAGTGACTACGATCAACCGACAGCGAATCAACTAGCTTACTATCTCAAAGAAAATGGTGTCACCATCATCACAGTTGCAAATATGGATGACGTGAGTACAGAGCCTTCATTCTACCAACAATTCTTTTTTTCAGTCCAACAAAATCATGAAACTGAAAGCCCTTGCAAGCGAAGGTTATGGGTTCTCCTTATCCGATGAAAACTTGACGGCGGGAATTCAAAAAGGCCTTTGTGATGCCAACTGCTTCTGTCCAGAAGGGTATCATCAATTCATGTATCCTGAGAATAACACCACTCGTAAATTTGGGTCATGTATTGAGGCAATGTTTGTCGAGAGACACTGGTCCGAGGCAAGACTAACTTGCCAGAATCGCAACCAACAAGGATATCTGGCCACTGAGTTTAGTATTGAAAAGGCGTTGTTCAATCAAGGTGAGCATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>181 140 117 94 57 56 54 53 46 40 39 23 20 19 13 11 9 7 7 4 3 3 2 2</canonical_bands>
                <polymorphic_bands>181 140 128 94 57 56 54 53 46 40 39 23 20 19 13 9 7 7 4 3 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTATATGTTCTACAGCGTGAG</pcr_primer_p1>
		<pcr_primer_p2>TTGATCGTAGTCACTGGAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>CGTATATGTTCTACAGCGTGAGAAAAAAATCGAAAAGTGAGGAGTGGAGCGATGAATAATTAAAAATGTTGAATTGCGCCGAAGGCGCAACAGCCAGCTGTTTGAAGCGGCAAACAGAAGGCTTGTCTCTTATAGGAACCGAAATAATTGAGCTCAAAATGCACGGATAGGGTGGGCTTATACTATTAGATCATTCCAGGTTTCTCAAAAAAATCATAATTCCAGTGACTACGATCAA</canonical_amplicon>
		<polymorphic_amplicon>CGTATATGTTCTACAGCGTGAGAAAAAAATCGAAAAGTGAGGAGTGGAGCGATGAATAATTAAAAATGTTGAATTGCGCCGAAGGCGCAACAGCCAGCTGTTTGAAGCGGCAAACAGAAGGCTTGTCTCTTATAGGAACCGAAATAATTGAGCTCAAAATGCAYGGATAGGGTGGGCTTATACTATTAGATCATTCCAGGTTTCTCAAAAAAATCATAATTCCAGTGACTACGATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4926</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>381922</contig_pos>
        <strand>+</strand>
        <context>TGGGCTTATA[C/T]TATTWGATCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGGAACCGAAATAATTGAGCTCAAAATGCACGGATAGGGTGGGCTTATA</left_flank>
        <right_flank>TATTAGATCATTCCAGGTTTCTCAAAAAAATCATAATTCCAGTGACTACG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAACCTCTACCGGATCAGCTACGCGATCAGGAAGTTGACCGACGCTGAAAGAGGCTGACTGCGATGGTTAGCACAAATATCTCTTTCCCTTGAAAAGATATTAAAGTATTTGAACAGATAAATTGTTTATTTTGGTATCTTCCTTATATATAAAACGCCTGACGCGTCTGTCGGTTCTATTGTCAGGCTGTCCGGTTTTGGGTTTCTGAATGAAAGGTTGGCCGCCGCCAAAACCGAACCCGCGGCCTTCCGCACAATAGCCGCTCACGCACACAGCTGCGCCATGAGGGCCACACTAGGAGAGGGGAGGGAGGGCGTATATGTTCTACAGCGTGAGAAAAAAATCGAAAAGTGAGGAGTGGAGCGATGAATAATTAAAAATGTTGAATTGCGCCGAAGGCGCAACAGCCAGCTGTTTGAAGCGGCAAACAGAAGGCTTGTCTCTTATAGGAACCGAAATAATTGAGCTCAAAATGCACGGATAGGGTGGGCTTATACTATTAGATCATTCCAGGTTTCTCAAAAAAATCATAATTCCAGTGACTACGATCAACCGACAGCGAATCAACTAGCTTACTATCTCAAAGAAAATGGTGTCACCATCATCACAGTTGCAAATATGGATGACGTGAGTACAGAGCCTTCATTCTACCAACAATTCTTTTTTTCAGTCCAACAAAATCATGAAACTGAAAGCCCTTGCAAGCGAAGGTTATGGGTTCTCCTTATCCGATGAAAACTTGACGGCGGGAATTCAAAAAGGCCTTTGTGATGCCAACTGCTTCTGTCCAGAAGGGTATCATCAATTCATGTATCCTGAGAATAACACCACTCGTAAATTTGGGTCATGTATTGAGGCAATGTTTGTCGAGAGACACTGGTCCGAGGCAAGACTAACTTGCCAGAATCGCAACCAACAAGGATATCTGGCCACTGAGTTTAGTATTGAAAAGGCGTTGTTCAATCAAGGTGAGCATTTTTGCCTGTTTATGTACCAA</canonical>
            <polymorphic>AATAACCTCTACCGGATCAGCTACGCGATCAGGAAGTTGACCGACGCTGAAAGAGGCTGACTGCGATGGTTAGCACAAATATCTCTTTCCCTTGAAAAGATATTAAAGTATTTGAACAGATAAATTGTTTATTTTGGTATCTTCCTTATATATAAAACGCCTGACGCGTCTGTCGGTTCTATTGTCAGGCTGTCCGGTTTTGGGTTTCTGAATGAAAGGTTGGCCGCCGCCAAAACCGAACCCGCGGCCTTCCGCACAATAGCCGCTCACGCACACAGCTGCGCCATGAGGGCCACACTAGGAGAGGGGAGGGAGGGCGTATATGTTCTACAGCGTGAGAAAAAAATCGAAAAGTGAGGAGTGGAGCGATGAATAATTAAAAATGTTGAATTGCGCCGAAGGCGCAACAGCCAGCTGTTTGAAGCGGCAAACAGAAGGCTTGTCTCTTATAGGAACCGAAATAATTGAGCTCAAAATGCACGGATAGGGTGGGCTTATAYTATTAGATCATTCCAGGTTTCTCAAAAAAATCATAATTCCAGTGACTACGATCAACCGACAGCGAATCAACTAGCTTACTATCTCAAAGAAAATGGTGTCACCATCATCACAGTTGCAAATATGGATGACGTGAGTACAGAGCCTTCATTCTACCAACAATTCTTTTTTTCAGTCCAACAAAATCATGAAACTGAAAGCCCTTGCAAGCGAAGGTTATGGGTTCTCCTTATCCGATGAAAACTTGACGGCGGGAATTCAAAAAGGCCTTTGTGATGCCAACTGCTTCTGTCCAGAAGGGTATCATCAATTCATGTATCCTGAGAATAACACCACTCGTAAATTTGGGTCATGTATTGAGGCAATGTTTGTCGAGAGACACTGGTCCGAGGCAAGACTAACTTGCCAGAATCGCAACCAACAAGGATATCTGGCCACTGAGTTTAGTATTGAAAAGGCGTTGTTCAATCAAGGTGAGCATTTTTGCCTGTTTATGTACCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTATATGTTCTACAGCGTGAG</pcr_primer_p1>
		<pcr_primer_p2>TTGATCGTAGTCACTGGAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>CGTATATGTTCTACAGCGTGAGAAAAAAATCGAAAAGTGAGGAGTGGAGCGATGAATAATTAAAAATGTTGAATTGCGCCGAAGGCGCAACAGCCAGCTGTTTGAAGCGGCAAACAGAAGGCTTGTCTCTTATAGGAACCGAAATAATTGAGCTCAAAATGCACGGATAGGGTGGGCTTATACTATTAGATCATTCCAGGTTTCTCAAAAAAATCATAATTCCAGTGACTACGATCAA</canonical_amplicon>
		<polymorphic_amplicon>CGTATATGTTCTACAGCGTGAGAAAAAAATCGAAAAGTGAGGAGTGGAGCGATGAATAATTAAAAATGTTGAATTGCGCCGAAGGCGCAACAGCCAGCTGTTTGAAGCGGCAAACAGAAGGCTTGTCTCTTATAGGAACCGAAATAATTGAGCTCAAAATGCACGGATAGGGTGGGCTTATAYTATTAGATCATTCCAGGTTTCTCAAAAAAATCATAATTCCAGTGACTACGATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4927</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>381927</contig_pos>
        <strand>+</strand>
        <context>TTATAYTATT[A/T]GATCATTCCM</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCGAAATAATTGAGCTCAAAATGCACGGATAGGGTGGGCTTATACTATT</left_flank>
        <right_flank>GATCATTCCAGGTTTCTCAAAAAAATCATAATTCCAGTGACTACGATCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCTACCGGATCAGCTACGCGATCAGGAAGTTGACCGACGCTGAAAGAGGCTGACTGCGATGGTTAGCACAAATATCTCTTTCCCTTGAAAAGATATTAAAGTATTTGAACAGATAAATTGTTTATTTTGGTATCTTCCTTATATATAAAACGCCTGACGCGTCTGTCGGTTCTATTGTCAGGCTGTCCGGTTTTGGGTTTCTGAATGAAAGGTTGGCCGCCGCCAAAACCGAACCCGCGGCCTTCCGCACAATAGCCGCTCACGCACACAGCTGCGCCATGAGGGCCACACTAGGAGAGGGGAGGGAGGGCGTATATGTTCTACAGCGTGAGAAAAAAATCGAAAAGTGAGGAGTGGAGCGATGAATAATTAAAAATGTTGAATTGCGCCGAAGGCGCAACAGCCAGCTGTTTGAAGCGGCAAACAGAAGGCTTGTCTCTTATAGGAACCGAAATAATTGAGCTCAAAATGCACGGATAGGGTGGGCTTATACTATTAGATCATTCCAGGTTTCTCAAAAAAATCATAATTCCAGTGACTACGATCAACCGACAGCGAATCAACTAGCTTACTATCTCAAAGAAAATGGTGTCACCATCATCACAGTTGCAAATATGGATGACGTGAGTACAGAGCCTTCATTCTACCAACAATTCTTTTTTTCAGTCCAACAAAATCATGAAACTGAAAGCCCTTGCAAGCGAAGGTTATGGGTTCTCCTTATCCGATGAAAACTTGACGGCGGGAATTCAAAAAGGCCTTTGTGATGCCAACTGCTTCTGTCCAGAAGGGTATCATCAATTCATGTATCCTGAGAATAACACCACTCGTAAATTTGGGTCATGTATTGAGGCAATGTTTGTCGAGAGACACTGGTCCGAGGCAAGACTAACTTGCCAGAATCGCAACCAACAAGGATATCTGGCCACTGAGTTTAGTATTGAAAAGGCGTTGTTCAATCAAGGTGAGCATTTTTGCCTGTTTATGTACCAACTGAA</canonical>
            <polymorphic>CCTCTACCGGATCAGCTACGCGATCAGGAAGTTGACCGACGCTGAAAGAGGCTGACTGCGATGGTTAGCACAAATATCTCTTTCCCTTGAAAAGATATTAAAGTATTTGAACAGATAAATTGTTTATTTTGGTATCTTCCTTATATATAAAACGCCTGACGCGTCTGTCGGTTCTATTGTCAGGCTGTCCGGTTTTGGGTTTCTGAATGAAAGGTTGGCCGCCGCCAAAACCGAACCCGCGGCCTTCCGCACAATAGCCGCTCACGCACACAGCTGCGCCATGAGGGCCACACTAGGAGAGGGGAGGGAGGGCGTATATGTTCTACAGCGTGAGAAAAAAATCGAAAAGTGAGGAGTGGAGCGATGAATAATTAAAAATGTTGAATTGCGCCGAAGGCGCAACAGCCAGCTGTTTGAAGCGGCAAACAGAAGGCTTGTCTCTTATAGGAACCGAAATAATTGAGCTCAAAATGCACGGATAGGGTGGGCTTATACTATTWGATCATTCCAGGTTTCTCAAAAAAATCATAATTCCAGTGACTACGATCAACCGACAGCGAATCAACTAGCTTACTATCTCAAAGAAAATGGTGTCACCATCATCACAGTTGCAAATATGGATGACGTGAGTACAGAGCCTTCATTCTACCAACAATTCTTTTTTTCAGTCCAACAAAATCATGAAACTGAAAGCCCTTGCAAGCGAAGGTTATGGGTTCTCCTTATCCGATGAAAACTTGACGGCGGGAATTCAAAAAGGCCTTTGTGATGCCAACTGCTTCTGTCCAGAAGGGTATCATCAATTCATGTATCCTGAGAATAACACCACTCGTAAATTTGGGTCATGTATTGAGGCAATGTTTGTCGAGAGACACTGGTCCGAGGCAAGACTAACTTGCCAGAATCGCAACCAACAAGGATATCTGGCCACTGAGTTTAGTATTGAAAAGGCGTTGTTCAATCAAGGTGAGCATTTTTGCCTGTTTATGTACCAACTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTATATGTTCTACAGCGTGAG</pcr_primer_p1>
		<pcr_primer_p2>TAGTAAGCTAGTTGATTCGCTGT</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>CGTATATGTTCTACAGCGTGAGAAAAAAATCGAAAAGTGAGGAGTGGAGCGATGAATAATTAAAAATGTTGAATTGCGCCGAAGGCGCAACAGCCAGCTGTTTGAAGCGGCAAACAGAAGGCTTGTCTCTTATAGGAACCGAAATAATTGAGCTCAAAATGCACGGATAGGGTGGGCTTATACTATTAGATCATTCCAGGTTTCTCAAAAAAATCATAATTCCAGTGACTACGATCAACCGACAGCGAATCAACTAGCTTACTA</canonical_amplicon>
		<polymorphic_amplicon>CGTATATGTTCTACAGCGTGAGAAAAAAATCGAAAAGTGAGGAGTGGAGCGATGAATAATTAAAAATGTTGAATTGCGCCGAAGGCGCAACAGCCAGCTGTTTGAAGCGGCAAACAGAAGGCTTGTCTCTTATAGGAACCGAAATAATTGAGCTCAAAATGCACGGATAGGGTGGGCTTATACTATTWGATCATTCCAGGTTTCTCAAAAAAATCATAATTCCAGTGACTACGATCAACCGACAGCGAATCAACTAGCTTACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4928</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>381937</contig_pos>
        <strand>+</strand>
        <context>WGATCATTCC[A/C]GGTTTCTCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGAGCTCAAAATGCACGGATAGGGTGGGCTTATACTATTAGATCATTCC</left_flank>
        <right_flank>GGTTTCTCAAAAAAATCATAATTCCAGTGACTACGATCAACCGACAGCGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAGCTACGCGATCAGGAAGTTGACCGACGCTGAAAGAGGCTGACTGCGATGGTTAGCACAAATATCTCTTTCCCTTGAAAAGATATTAAAGTATTTGAACAGATAAATTGTTTATTTTGGTATCTTCCTTATATATAAAACGCCTGACGCGTCTGTCGGTTCTATTGTCAGGCTGTCCGGTTTTGGGTTTCTGAATGAAAGGTTGGCCGCCGCCAAAACCGAACCCGCGGCCTTCCGCACAATAGCCGCTCACGCACACAGCTGCGCCATGAGGGCCACACTAGGAGAGGGGAGGGAGGGCGTATATGTTCTACAGCGTGAGAAAAAAATCGAAAAGTGAGGAGTGGAGCGATGAATAATTAAAAATGTTGAATTGCGCCGAAGGCGCAACAGCCAGCTGTTTGAAGCGGCAAACAGAAGGCTTGTCTCTTATAGGAACCGAAATAATTGAGCTCAAAATGCACGGATAGGGTGGGCTTATACTATTAGATCATTCCAGGTTTCTCAAAAAAATCATAATTCCAGTGACTACGATCAACCGACAGCGAATCAACTAGCTTACTATCTCAAAGAAAATGGTGTCACCATCATCACAGTTGCAAATATGGATGACGTGAGTACAGAGCCTTCATTCTACCAACAATTCTTTTTTTCAGTCCAACAAAATCATGAAACTGAAAGCCCTTGCAAGCGAAGGTTATGGGTTCTCCTTATCCGATGAAAACTTGACGGCGGGAATTCAAAAAGGCCTTTGTGATGCCAACTGCTTCTGTCCAGAAGGGTATCATCAATTCATGTATCCTGAGAATAACACCACTCGTAAATTTGGGTCATGTATTGAGGCAATGTTTGTCGAGAGACACTGGTCCGAGGCAAGACTAACTTGCCAGAATCGCAACCAACAAGGATATCTGGCCACTGAGTTTAGTATTGAAAAGGCGTTGTTCAATCAAGGTGAGCATTTTTGCCTGTTTATGTACCAACTGAATATTTTCAGC</canonical>
            <polymorphic>ATCAGCTACGCGATCAGGAAGTTGACCGACGCTGAAAGAGGCTGACTGCGATGGTTAGCACAAATATCTCTTTCCCTTGAAAAGATATTAAAGTATTTGAACAGATAAATTGTTTATTTTGGTATCTTCCTTATATATAAAACGCCTGACGCGTCTGTCGGTTCTATTGTCAGGCTGTCCGGTTTTGGGTTTCTGAATGAAAGGTTGGCCGCCGCCAAAACCGAACCCGCGGCCTTCCGCACAATAGCCGCTCACGCACACAGCTGCGCCATGAGGGCCACACTAGGAGAGGGGAGGGAGGGCGTATATGTTCTACAGCGTGAGAAAAAAATCGAAAAGTGAGGAGTGGAGCGATGAATAATTAAAAATGTTGAATTGCGCCGAAGGCGCAACAGCCAGCTGTTTGAAGCGGCAAACAGAAGGCTTGTCTCTTATAGGAACCGAAATAATTGAGCTCAAAATGCACGGATAGGGTGGGCTTATACTATTAGATCATTCCMGGTTTCTCAAAAAAATCATAATTCCAGTGACTACGATCAACCGACAGCGAATCAACTAGCTTACTATCTCAAAGAAAATGGTGTCACCATCATCACAGTTGCAAATATGGATGACGTGAGTACAGAGCCTTCATTCTACCAACAATTCTTTTTTTCAGTCCAACAAAATCATGAAACTGAAAGCCCTTGCAAGCGAAGGTTATGGGTTCTCCTTATCCGATGAAAACTTGACGGCGGGAATTCAAAAAGGCCTTTGTGATGCCAACTGCTTCTGTCCAGAAGGGTATCATCAATTCATGTATCCTGAGAATAACACCACTCGTAAATTTGGGTCATGTATTGAGGCAATGTTTGTCGAGAGACACTGGTCCGAGGCAAGACTAACTTGCCAGAATCGCAACCAACAAGGATATCTGGCCACTGAGTTTAGTATTGAAAAGGCGTTGTTCAATCAAGGTGAGCATTTTTGCCTGTTTATGTACCAACTGAATATTTTCAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTATATGTTCTACAGCGTGAG</pcr_primer_p1>
		<pcr_primer_p2>TAGTAAGCTAGTTGATTCGCTGT</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>CGTATATGTTCTACAGCGTGAGAAAAAAATCGAAAAGTGAGGAGTGGAGCGATGAATAATTAAAAATGTTGAATTGCGCCGAAGGCGCAACAGCCAGCTGTTTGAAGCGGCAAACAGAAGGCTTGTCTCTTATAGGAACCGAAATAATTGAGCTCAAAATGCACGGATAGGGTGGGCTTATACTATTAGATCATTCCAGGTTTCTCAAAAAAATCATAATTCCAGTGACTACGATCAACCGACAGCGAATCAACTAGCTTACTA</canonical_amplicon>
		<polymorphic_amplicon>CGTATATGTTCTACAGCGTGAGAAAAAAATCGAAAAGTGAGGAGTGGAGCGATGAATAATTAAAAATGTTGAATTGCGCCGAAGGCGCAACAGCCAGCTGTTTGAAGCGGCAAACAGAAGGCTTGTCTCTTATAGGAACCGAAATAATTGAGCTCAAAATGCACGGATAGGGTGGGCTTATACTATTAGATCATTCCMGGTTTCTCAAAAAAATCATAATTCCAGTGACTACGATCAACCGACAGCGAATCAACTAGCTTACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4929</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>382025</contig_pos>
        <strand>+</strand>
        <context>ATGGTGTCAC[C/T]ATCATCACAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAACCGACAGCGAATCAACTAGCTTACTATCTCAAAGAAAATGGTGTCAC</left_flank>
        <right_flank>ATCATCACAGTTGCAAATATGGATGACGTGAGTACAGAGCCTTCATTCTA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAGTATTTGAACAGATAAATTGTTTATTTTGGTATCTTCCTTATATATAAAACGCCTGACGCGTCTGTCGGTTCTATTGTCAGGCTGTCCGGTTTTGGGTTTCTGAATGAAAGGTTGGCCGCCGCCAAAACCGAACCCGCGGCCTTCCGCACAATAGCCGCTCACGCACACAGCTGCGCCATGAGGGCCACACTAGGAGAGGGGAGGGAGGGCGTATATGTTCTACAGCGTGAGAAAAAAATCGAAAAGTGAGGAGTGGAGCGATGAATAATTAAAAATGTTGAATTGCGCCGAAGGCGCAACAGCCAGCTGTTTGAAGCGGCAAACAGAAGGCTTGTCTCTTATAGGAACCGAAATAATTGAGCTCAAAATGCACGGATAGGGTGGGCTTATACTATTAGATCATTCCAGGTTTCTCAAAAAAATCATAATTCCAGTGACTACGATCAACCGACAGCGAATCAACTAGCTTACTATCTCAAAGAAAATGGTGTCACCATCATCACAGTTGCAAATATGGATGACGTGAGTACAGAGCCTTCATTCTACCAACAATTCTTTTTTTCAGTCCAACAAAATCATGAAACTGAAAGCCCTTGCAAGCGAAGGTTATGGGTTCTCCTTATCCGATGAAAACTTGACGGCGGGAATTCAAAAAGGCCTTTGTGATGCCAACTGCTTCTGTCCAGAAGGGTATCATCAATTCATGTATCCTGAGAATAACACCACTCGTAAATTTGGGTCATGTATTGAGGCAATGTTTGTCGAGAGACACTGGTCCGAGGCAAGACTAACTTGCCAGAATCGCAACCAACAAGGATATCTGGCCACTGAGTTTAGTATTGAAAAGGCGTTGTTCAATCAAGGTGAGCATTTTTGCCTGTTTATGTACCAACTGAATATTTTCAGCTCTGTTCGATGGTCAGCTCAGAAACTATCACATCGGACTCCACTTTGTCAATGGTGCATACTTCTGGGAGCAGAAAAATGGGATGCCA</canonical>
            <polymorphic>TAAAGTATTTGAACAGATAAATTGTTTATTTTGGTATCTTCCTTATATATAAAACGCCTGACGCGTCTGTCGGTTCTATTGTCAGGCTGTCCGGTTTTGGGTTTCTGAATGAAAGGTTGGCCGCCGCCAAAACCGAACCCGCGGCCTTCCGCACAATAGCCGCTCACGCACACAGCTGCGCCATGAGGGCCACACTAGGAGAGGGGAGGGAGGGCGTATATGTTCTACAGCGTGAGAAAAAAATCGAAAAGTGAGGAGTGGAGCGATGAATAATTAAAAATGTTGAATTGCGCCGAAGGCGCAACAGCCAGCTGTTTGAAGCGGCAAACAGAAGGCTTGTCTCTTATAGGAACCGAAATAATTGAGCTCAAAATGCACGGATAGGGTGGGCTTATACTATTAGATCATTCCAGGTTTCTCAAAAAAATCATAATTCCAGTGACTACGATCAACCGACAGCGAATCAACTAGCTTACTATCTCAAAGAAAATGGTGTCACYATCATCACAGTTGCAAATATGGATGACGTGAGTACAGAGCCTTCATTCTACCAACAATTCTTTTTTTCAGTCCAACAAAATCATGAAACTGAAAGCCCTTGCAAGCGAAGGTTATGGGTTCTCCTTATCCGATGAAAACTTGACGGCGGGAATTCAAAAAGGCCTTTGTGATGCCAACTGCTTCTGTCCAGAAGGGTATCATCAATTCATGTATCCTGAGAATAACACCACTCGTAAATTTGGGTCATGTATTGAGGCAATGTTTGTCGAGAGACACTGGTCCGAGGCAAGACTAACTTGCCAGAATCGCAACCAACAAGGATATCTGGCCACTGAGTTTAGTATTGAAAAGGCGTTGTTCAATCAAGGTGAGCATTTTTGCCTGTTTATGTACCAACTGAATATTTTCAGCTCTGTTCGATGGTCAGCTCAGAAACTATCACATCGGACTCCACTTTGTCAATGGTGCATACTTCTGGGAGCAGAAAAATGGGATGCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCATAATTCCAGTGACTACG</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTTCATCGGATAAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>217</pcr_amplicon_size>
		<canonical_amplicon>AAATCATAATTCCAGTGACTACGATCAACCGACAGCGAATCAACTAGCTTACTATCTCAAAGAAAATGGTGTCACCATCATCACAGTTGCAAATATGGATGACGTGAGTACAGAGCCTTCATTCTACCAACAATTCTTTTTTTCAGTCCAACAAAATCATGAAACTGAAAGCCCTTGCAAGCGAAGGTTATGGGTTCTCCTTATCCGATGAAAACTT</canonical_amplicon>
		<polymorphic_amplicon>AAATCATAATTCCAGTGACTACGATCAACCGACAGCGAATCAACTAGCTTACTATCTCAAAGAAAATGGTGTCACYATCATCACAGTTGCAAATATGGATGACGTGAGTACAGAGCCTTCATTCTACCAACAATTCTTTTTTTCAGTCCAACAAAATCATGAAACTGAAAGCCCTTGCAAGCGAAGGTTATGGGTTCTCCTTATCCGATGAAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4930</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>382064</contig_pos>
        <strand>+</strand>
        <context>TGAGTACAGA[A/G]CCTTCATTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGGTGTCACCATCATCACAGTTGCAAATATGGATGACGTGAGTACAGA</left_flank>
        <right_flank>CCTTCATTCTACCAACAATTCTTTTTTTCAGTCCAACAAAATCATGAAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTTATATATAAAACGCCTGACGCGTCTGTCGGTTCTATTGTCAGGCTGTCCGGTTTTGGGTTTCTGAATGAAAGGTTGGCCGCCGCCAAAACCGAACCCGCGGCCTTCCGCACAATAGCCGCTCACGCACACAGCTGCGCCATGAGGGCCACACTAGGAGAGGGGAGGGAGGGCGTATATGTTCTACAGCGTGAGAAAAAAATCGAAAAGTGAGGAGTGGAGCGATGAATAATTAAAAATGTTGAATTGCGCCGAAGGCGCAACAGCCAGCTGTTTGAAGCGGCAAACAGAAGGCTTGTCTCTTATAGGAACCGAAATAATTGAGCTCAAAATGCACGGATAGGGTGGGCTTATACTATTAGATCATTCCAGGTTTCTCAAAAAAATCATAATTCCAGTGACTACGATCAACCGACAGCGAATCAACTAGCTTACTATCTCAAAGAAAATGGTGTCACCATCATCACAGTTGCAAATATGGATGACGTGAGTACAGAGCCTTCATTCTACCAACAATTCTTTTTTTCAGTCCAACAAAATCATGAAACTGAAAGCCCTTGCAAGCGAAGGTTATGGGTTCTCCTTATCCGATGAAAACTTGACGGCGGGAATTCAAAAAGGCCTTTGTGATGCCAACTGCTTCTGTCCAGAAGGGTATCATCAATTCATGTATCCTGAGAATAACACCACTCGTAAATTTGGGTCATGTATTGAGGCAATGTTTGTCGAGAGACACTGGTCCGAGGCAAGACTAACTTGCCAGAATCGCAACCAACAAGGATATCTGGCCACTGAGTTTAGTATTGAAAAGGCGTTGTTCAATCAAGGTGAGCATTTTTGCCTGTTTATGTACCAACTGAATATTTTCAGCTCTGTTCGATGGTCAGCTCAGAAACTATCACATCGGACTCCACTTTGTCAATGGTGCATACTTCTGGGAGCAGAAAAATGGGATGCCACTACTTCCCCTAACTAAACCCCTATACCAACTGGACAAG</canonical>
            <polymorphic>TCCTTATATATAAAACGCCTGACGCGTCTGTCGGTTCTATTGTCAGGCTGTCCGGTTTTGGGTTTCTGAATGAAAGGTTGGCCGCCGCCAAAACCGAACCCGCGGCCTTCCGCACAATAGCCGCTCACGCACACAGCTGCGCCATGAGGGCCACACTAGGAGAGGGGAGGGAGGGCGTATATGTTCTACAGCGTGAGAAAAAAATCGAAAAGTGAGGAGTGGAGCGATGAATAATTAAAAATGTTGAATTGCGCCGAAGGCGCAACAGCCAGCTGTTTGAAGCGGCAAACAGAAGGCTTGTCTCTTATAGGAACCGAAATAATTGAGCTCAAAATGCACGGATAGGGTGGGCTTATACTATTAGATCATTCCAGGTTTCTCAAAAAAATCATAATTCCAGTGACTACGATCAACCGACAGCGAATCAACTAGCTTACTATCTCAAAGAAAATGGTGTCACCATCATCACAGTTGCAAATATGGATGACGTGAGTACAGARCCTTCATTCTACCAACAATTCTTTTTTTCAGTCCAACAAAATCATGAAACTGAAAGCCCTTGCAAGCGAAGGTTATGGGTTCTCCTTATCCGATGAAAACTTGACGGCGGGAATTCAAAAAGGCCTTTGTGATGCCAACTGCTTCTGTCCAGAAGGGTATCATCAATTCATGTATCCTGAGAATAACACCACTCGTAAATTTGGGTCATGTATTGAGGCAATGTTTGTCGAGAGACACTGGTCCGAGGCAAGACTAACTTGCCAGAATCGCAACCAACAAGGATATCTGGCCACTGAGTTTAGTATTGAAAAGGCGTTGTTCAATCAAGGTGAGCATTTTTGCCTGTTTATGTACCAACTGAATATTTTCAGCTCTGTTCGATGGTCAGCTCAGAAACTATCACATCGGACTCCACTTTGTCAATGGTGCATACTTCTGGGAGCAGAAAAATGGGATGCCACTACTTCCCCTAACTAAACCCCTATACCAACTGGACAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>167 118 111 82 81 68 67 56 47 34 31 24 24 24 17 16 15 14 4</canonical_bands>
                <polymorphic_bands>167 124 118 111 82 81 67 47 34 31 24 24 24 17 16 15 14 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGCGAATCAACTAGCTTACTAT</pcr_primer_p1>
		<pcr_primer_p2>ATTGATGATACCCTTCTGGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGCGAATCAACTAGCTTACTATCTCAAAGAAAATGGTGTCACCATCATCACAGTTGCAAATATGGATGACGTGAGTACAGAGCCTTCATTCTACCAACAATTCTTTTTTTCAGTCCAACAAAATCATGAAACTGAAAGCCCTTGCAAGCGAAGGTTATGGGTTCTCCTTATCCGATGAAAACTTGACGGCGGGAATTCAAAAAGGCCTTTGTGATGCCAACTGCTTCTGTCCAGAAGGGTATCATCAAT</canonical_amplicon>
		<polymorphic_amplicon>CAGCGAATCAACTAGCTTACTATCTCAAAGAAAATGGTGTCACCATCATCACAGTTGCAAATATGGATGACGTGAGTACAGARCCTTCATTCTACCAACAATTCTTTTTTTCAGTCCAACAAAATCATGAAACTGAAAGCCCTTGCAAGCGAAGGTTATGGGTTCTCCTTATCCGATGAAAACTTGACGGCGGGAATTCAAAAAGGCCTTTGTGATGCCAACTGCTTCTGTCCAGAAGGGTATCATCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4931</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>384044</contig_pos>
        <strand>+</strand>
        <context>GCCAGGCYAA[A/G]AATGGCTAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTCTCCATTGGATCTTGTGTTGGTGGACAAGGGCAGAAGCCAGGCCAA</left_flank>
        <right_flank>AATGGCTAATAGGATGAACACCTTCATGTATTCTGGAAAAAAGTACGTTG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAGACATTATGGGTATGATTTCGTGATGAACTCACTCTGACAGTATCCTCTCCAAGAATACCCGCAGCATCTCCAGACTCGTACCGGATCACCCAAGACTGTCCATTCTTAACAAAAGTACTAGATTTGGTAGAATCGAATTTGCTCTTCTTATTGCAATTAGTTCTAAAATCTCACGAACACATAAATTGGTATTTCTTCCAAATCGACTACTCACGTGCAAGTGGGTCCTGGAATCCACAAATTCGCCGATCCGGTATCCAACACAACAATGAAGCTCTGGTCTGGAGTACCAATGGTAATGTTTCCGAGGTACTCGTAATCTCCAAAGTCGTTGACTTTTTGTGGAAGACTGGCCAGCATTTTTGGGGAGGACGGGCGTATTTTCTCTTGATATTCCACATAAGCAGCGTACTCTCCACTACGGAGCAACTCCATCTTCCTGGATTCTCTCCATTGGATCTTGTGTTGGTGGACAAGGGCAGAAGCCAGGCCAAAAATGGCTAATAGGATGAACACCTTCATGTATTCTGGAAAAAAGTACGTTGAGTGGGTAATGCAGCTTGAAAGCTCAGATGGATTGATTGTCATTTTCTCCTTGCTTTTATACTTTTCAGTTAACGTATCCTAGCCACGGAACTAGCATGACGTTACATCCCATCTGCTACTCCAAGCGTCACGGATGGCTCAATTGTCACCATACTCCGGGTGCGAAGGTTCCTCTCGATTCCTAATCAGTTCATTTTCAAATCAACTCTTTGTTATCTTCTAGCTCATAAACGTTGTCCTGTAAGCTTTTCGCACCCGGGAAGTTAATAATGATAACTGGAGTTCATGCTAAATACGAAAATGACGCTATTCGGTAATCACGTAGGAGTACATTGTGTAGCATTTCAGAAAAAACGGCTGGACCGATTCGAAAGAGCCATATGTGATGATATGGAGTGTGACGAGCATATTTGTTCCTCATATTCAGACAAATTTCTTCCAGATCTTCA</canonical>
            <polymorphic>TTAAGACATTATGGGTATGATTTCGTGATGAACTCACTCTGACAGTATCCTCTCCAAGAATACCCGCAGCATCTCCAGACTCGTACCGGATCACCCAAGACTGTCCATTCTTAACAAAAGTACTAGATTTGGTAGAATCGAATTTGCTCTTCTTATTGCAATTAGTTCTAAAATCTCACGAACACATAAATTGGTATTTCTTCCAAATCGACTACTCACGTGCAAGTGGGTCCTGGAATCCACAAATTCGCCGATCCGGTATCCAACACAACAATGAAGCTCTGGTCTGGAGTACCAATGGTAATGTTTCCGAGGTACTCGTAATCTCCAAAGTCGTTGACTTTTTGTGGAAGACTGGCCAGCATTTTTGGGGAGGACGGGCGTATTTTCTCTTGATATTCCACATAAGCAGCGTACTCTCCACTACGGAGCAACTCCATCTTCCTGGATTCTCTCCATTGGATCTTGTGTTGGTGGACAAGGGCAGAAGCCAGGCCAARAATGGCTAATAGGATGAACACCTTCATGTATTCTGGAAAAAAGTACGTTGAGTGGGTAATGCAGCTTGAAAGCTCAGATGGATTGATTGTCATTTTCTCCTTGCTTTTATACTTTTCAGTTAACGTATCCTAGCCACGGAACTAGCATGACGTTACATCCCATCTGCTACTCCAAGCGTCACGGATGGCTCAATTGTCACCATACTCCGGGTGCGAAGGTTCCTCTCGATTCCTAATCAGTTCATTTTCAAATCAACTCTTTGTTATCTTCTAGCTCATAAACGTTGTCCTGTAAGCTTTTCGCACCCGGGAAGTTAATAATGATAACTGGAGTTCATGCTAAATACGAAAATGACGCTATTCGGTAATCACGTAGGAGTACATTGTGTAGCATTTCAGAAAAAACGGCTGGACCGATTCGAAAGAGCCATATGTGATGATATGGAGTGTGACGAGCATATTTGTTCCTCATATTCAGACAAATTTCTTCCAGATCTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTCTTGATATTCCACATAAGC</pcr_primer_p1>
		<pcr_primer_p2>GCTAGGATACGTTAACTGAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTCTCTTGATATTCCACATAAGCAGCGTACTCTCCACTACGGAGCAACTCCATCTTCCTGGATTCTCTCCATTGGATCTTGTGTTGGTGGACAAGGGCAGAAGCCAGGCCAAAAATGGCTAATAGGATGAACACCTTCATGTATTCTGGAAAAAAGTACGTTGAGTGGGTAATGCAGCTTGAAAGCTCAGATGGATTGATTGTCATTTTCTCCTTGCTTTTATACTTTTCAGTTAACGTATCCTAGC</canonical_amplicon>
		<polymorphic_amplicon>TTCTCTTGATATTCCACATAAGCAGCGTACTCTCCACTACGGAGCAACTCCATCTTCCTGGATTCTCTCCATTGGATCTTGTGTTGGTGGACAAGGGCAGAAGCCAGGCCAARAATGGCTAATAGGATGAACACCTTCATGTATTCTGGAAAAAAGTACGTTGAGTGGGTAATGCAGCTTGAAAGCTCAGATGGATTGATTGTCATTTTCTCCTTGCTTTTATACTTTTCAGTTAACGTATCCTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4932</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>384041</contig_pos>
        <strand>+</strand>
        <context>GAAGCCAGGC[C/T]AARAATGGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGATTCTCTCCATTGGATCTTGTGTTGGTGGACAAGGGCAGAAGCCAGGC</left_flank>
        <right_flank>AAAAATGGCTAATAGGATGAACACCTTCATGTATTCTGGAAAAAAGTACG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGTTAAGACATTATGGGTATGATTTCGTGATGAACTCACTCTGACAGTATCCTCTCCAAGAATACCCGCAGCATCTCCAGACTCGTACCGGATCACCCAAGACTGTCCATTCTTAACAAAAGTACTAGATTTGGTAGAATCGAATTTGCTCTTCTTATTGCAATTAGTTCTAAAATCTCACGAACACATAAATTGGTATTTCTTCCAAATCGACTACTCACGTGCAAGTGGGTCCTGGAATCCACAAATTCGCCGATCCGGTATCCAACACAACAATGAAGCTCTGGTCTGGAGTACCAATGGTAATGTTTCCGAGGTACTCGTAATCTCCAAAGTCGTTGACTTTTTGTGGAAGACTGGCCAGCATTTTTGGGGAGGACGGGCGTATTTTCTCTTGATATTCCACATAAGCAGCGTACTCTCCACTACGGAGCAACTCCATCTTCCTGGATTCTCTCCATTGGATCTTGTGTTGGTGGACAAGGGCAGAAGCCAGGCCAAAAATGGCTAATAGGATGAACACCTTCATGTATTCTGGAAAAAAGTACGTTGAGTGGGTAATGCAGCTTGAAAGCTCAGATGGATTGATTGTCATTTTCTCCTTGCTTTTATACTTTTCAGTTAACGTATCCTAGCCACGGAACTAGCATGACGTTACATCCCATCTGCTACTCCAAGCGTCACGGATGGCTCAATTGTCACCATACTCCGGGTGCGAAGGTTCCTCTCGATTCCTAATCAGTTCATTTTCAAATCAACTCTTTGTTATCTTCTAGCTCATAAACGTTGTCCTGTAAGCTTTTCGCACCCGGGAAGTTAATAATGATAACTGGAGTTCATGCTAAATACGAAAATGACGCTATTCGGTAATCACGTAGGAGTACATTGTGTAGCATTTCAGAAAAAACGGCTGGACCGATTCGAAAGAGCCATATGTGATGATATGGAGTGTGACGAGCATATTTGTTCCTCATATTCAGACAAATTTCTTCCAGATCT</canonical>
            <polymorphic>TAGTTAAGACATTATGGGTATGATTTCGTGATGAACTCACTCTGACAGTATCCTCTCCAAGAATACCCGCAGCATCTCCAGACTCGTACCGGATCACCCAAGACTGTCCATTCTTAACAAAAGTACTAGATTTGGTAGAATCGAATTTGCTCTTCTTATTGCAATTAGTTCTAAAATCTCACGAACACATAAATTGGTATTTCTTCCAAATCGACTACTCACGTGCAAGTGGGTCCTGGAATCCACAAATTCGCCGATCCGGTATCCAACACAACAATGAAGCTCTGGTCTGGAGTACCAATGGTAATGTTTCCGAGGTACTCGTAATCTCCAAAGTCGTTGACTTTTTGTGGAAGACTGGCCAGCATTTTTGGGGAGGACGGGCGTATTTTCTCTTGATATTCCACATAAGCAGCGTACTCTCCACTACGGAGCAACTCCATCTTCCTGGATTCTCTCCATTGGATCTTGTGTTGGTGGACAAGGGCAGAAGCCAGGCYAAAAATGGCTAATAGGATGAACACCTTCATGTATTCTGGAAAAAAGTACGTTGAGTGGGTAATGCAGCTTGAAAGCTCAGATGGATTGATTGTCATTTTCTCCTTGCTTTTATACTTTTCAGTTAACGTATCCTAGCCACGGAACTAGCATGACGTTACATCCCATCTGCTACTCCAAGCGTCACGGATGGCTCAATTGTCACCATACTCCGGGTGCGAAGGTTCCTCTCGATTCCTAATCAGTTCATTTTCAAATCAACTCTTTGTTATCTTCTAGCTCATAAACGTTGTCCTGTAAGCTTTTCGCACCCGGGAAGTTAATAATGATAACTGGAGTTCATGCTAAATACGAAAATGACGCTATTCGGTAATCACGTAGGAGTACATTGTGTAGCATTTCAGAAAAAACGGCTGGACCGATTCGAAAGAGCCATATGTGATGATATGGAGTGTGACGAGCATATTTGTTCCTCATATTCAGACAAATTTCTTCCAGATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>502 361 137</canonical_bands>
                <polymorphic_bands>639 361</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>282 132 112 86 79 70 61 59 55 22 19 10 8 5</canonical_bands>
                <polymorphic_bands>282 132 112 86 79 70 61 59 55 22 19 15 8</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 361 137</canonical_bands>
                <polymorphic_bands>639 361</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTCTTGATATTCCACATAAGC</pcr_primer_p1>
		<pcr_primer_p2>GCTAGGATACGTTAACTGAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTCTCTTGATATTCCACATAAGCAGCGTACTCTCCACTACGGAGCAACTCCATCTTCCTGGATTCTCTCCATTGGATCTTGTGTTGGTGGACAAGGGCAGAAGCCAGGCCAAAAATGGCTAATAGGATGAACACCTTCATGTATTCTGGAAAAAAGTACGTTGAGTGGGTAATGCAGCTTGAAAGCTCAGATGGATTGATTGTCATTTTCTCCTTGCTTTTATACTTTTCAGTTAACGTATCCTAGC</canonical_amplicon>
		<polymorphic_amplicon>TTCTCTTGATATTCCACATAAGCAGCGTACTCTCCACTACGGAGCAACTCCATCTTCCTGGATTCTCTCCATTGGATCTTGTGTTGGTGGACAAGGGCAGAAGCCAGGCYAAAAATGGCTAATAGGATGAACACCTTCATGTATTCTGGAAAAAAGTACGTTGAGTGGGTAATGCAGCTTGAAAGCTCAGATGGATTGATTGTCATTTTCTCCTTGCTTTTATACTTTTCAGTTAACGTATCCTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4933</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>384020</contig_pos>
        <strand>+</strand>
        <context>TTGTGTTGGT[A/G]GACAAGGGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGGAGCAACTCCATCTTCCTGGATTCTCTCCATTGGATCTTGTGTTGGT</left_flank>
        <right_flank>GACAAGGGCAGAAGCCAGGCCAAAAATGGCTAATAGGATGAACACCTTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTGGCTCCGAACTGAATTATTAGTTAAGACATTATGGGTATGATTTCGTGATGAACTCACTCTGACAGTATCCTCTCCAAGAATACCCGCAGCATCTCCAGACTCGTACCGGATCACCCAAGACTGTCCATTCTTAACAAAAGTACTAGATTTGGTAGAATCGAATTTGCTCTTCTTATTGCAATTAGTTCTAAAATCTCACGAACACATAAATTGGTATTTCTTCCAAATCGACTACTCACGTGCAAGTGGGTCCTGGAATCCACAAATTCGCCGATCCGGTATCCAACACAACAATGAAGCTCTGGTCTGGAGTACCAATGGTAATGTTTCCGAGGTACTCGTAATCTCCAAAGTCGTTGACTTTTTGTGGAAGACTGGCCAGCATTTTTGGGGAGGACGGGCGTATTTTCTCTTGATATTCCACATAAGCAGCGTACTCTCCACTACGGAGCAACTCCATCTTCCTGGATTCTCTCCATTGGATCTTGTGTTGGTGGACAAGGGCAGAAGCCAGGCCAAAAATGGCTAATAGGATGAACACCTTCATGTATTCTGGAAAAAAGTACGTTGAGTGGGTAATGCAGCTTGAAAGCTCAGATGGATTGATTGTCATTTTCTCCTTGCTTTTATACTTTTCAGTTAACGTATCCTAGCCACGGAACTAGCATGACGTTACATCCCATCTGCTACTCCAAGCGTCACGGATGGCTCAATTGTCACCATACTCCGGGTGCGAAGGTTCCTCTCGATTCCTAATCAGTTCATTTTCAAATCAACTCTTTGTTATCTTCTAGCTCATAAACGTTGTCCTGTAAGCTTTTCGCACCCGGGAAGTTAATAATGATAACTGGAGTTCATGCTAAATACGAAAATGACGCTATTCGGTAATCACGTAGGAGTACATTGTGTAGCATTTCAGAAAAAACGGCTGGACCGATTCGAAAGAGCCATATGTGATGATATGGAGTGTGACGAGCATATTTGTTCCTCATATTC</canonical>
            <polymorphic>CTTGGCTCCGAACTGAATTATTAGTTAAGACATTATGGGTATGATTTCGTGATGAACTCACTCTGACAGTATCCTCTCCAAGAATACCCGCAGCATCTCCAGACTCGTACCGGATCACCCAAGACTGTCCATTCTTAACAAAAGTACTAGATTTGGTAGAATCGAATTTGCTCTTCTTATTGCAATTAGTTCTAAAATCTCACGAACACATAAATTGGTATTTCTTCCAAATCGACTACTCACGTGCAAGTGGGTCCTGGAATCCACAAATTCGCCGATCCGGTATCCAACACAACAATGAAGCTCTGGTCTGGAGTACCAATGGTAATGTTTCCGAGGTACTCGTAATCTCCAAAGTCGTTGACTTTTTGTGGAAGACTGGCCAGCATTTTTGGGGAGGACGGGCGTATTTTCTCTTGATATTCCACATAAGCAGCGTACTCTCCACTACGGAGCAACTCCATCTTCCTGGATTCTCTCCATTGGATCTTGTGTTGGTRGACAAGGGCAGAAGCCAGGCCAAAAATGGCTAATAGGATGAACACCTTCATGTATTCTGGAAAAAAGTACGTTGAGTGGGTAATGCAGCTTGAAAGCTCAGATGGATTGATTGTCATTTTCTCCTTGCTTTTATACTTTTCAGTTAACGTATCCTAGCCACGGAACTAGCATGACGTTACATCCCATCTGCTACTCCAAGCGTCACGGATGGCTCAATTGTCACCATACTCCGGGTGCGAAGGTTCCTCTCGATTCCTAATCAGTTCATTTTCAAATCAACTCTTTGTTATCTTCTAGCTCATAAACGTTGTCCTGTAAGCTTTTCGCACCCGGGAAGTTAATAATGATAACTGGAGTTCATGCTAAATACGAAAATGACGCTATTCGGTAATCACGTAGGAGTACATTGTGTAGCATTTCAGAAAAAACGGCTGGACCGATTCGAAAGAGCCATATGTGATGATATGGAGTGTGACGAGCATATTTGTTCCTCATATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>92 85 82 81 66 57 54 51 48 47 45 44 34 34 26 25 20 18 17 14 14 13 9 6 6 6 4 2</canonical_bands>
                <polymorphic_bands>92 85 82 81 66 57 54 51 50 48 47 45 34 34 26 25 20 18 17 14 14 13 9 6 6 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTCTTGATATTCCACATAAGC</pcr_primer_p1>
		<pcr_primer_p2>GCTAGGATACGTTAACTGAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTCTCTTGATATTCCACATAAGCAGCGTACTCTCCACTACGGAGCAACTCCATCTTCCTGGATTCTCTCCATTGGATCTTGTGTTGGTGGACAAGGGCAGAAGCCAGGCCAAAAATGGCTAATAGGATGAACACCTTCATGTATTCTGGAAAAAAGTACGTTGAGTGGGTAATGCAGCTTGAAAGCTCAGATGGATTGATTGTCATTTTCTCCTTGCTTTTATACTTTTCAGTTAACGTATCCTAGC</canonical_amplicon>
		<polymorphic_amplicon>TTCTCTTGATATTCCACATAAGCAGCGTACTCTCCACTACGGAGCAACTCCATCTTCCTGGATTCTCTCCATTGGATCTTGTGTTGGTRGACAAGGGCAGAAGCCAGGCCAAAAATGGCTAATAGGATGAACACCTTCATGTATTCTGGAAAAAAGTACGTTGAGTGGGTAATGCAGCTTGAAAGCTCAGATGGATTGATTGTCATTTTCTCCTTGCTTTTATACTTTTCAGTTAACGTATCCTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4934</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>383877</contig_pos>
        <strand>+</strand>
        <context>AATCTCCAAA[A/G]TCGTTGACTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGTCTGGAGTACCAATGGTAATGTTTCCGAGGTACTCGTAATCTCCAAA</left_flank>
        <right_flank>TCGTTGACTTTTTGTGGAAGACTGGCCAGCATTTTTGGGGAGGACGGGCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAGGGGTGGAACCACTCCGTCGACAGCGAGAGAGGTGAAGGCAAGTCCAAGGATTCCATCAGTAGCATCTTGTTTGAAATCAGCAGATATTTTGCTAGCTATTCCAAAGGTGGTTGATGGGATAGCAAGTTGGGATTCACCCTTGGCTCCGAACTGAATTATTAGTTAAGACATTATGGGTATGATTTCGTGATGAACTCACTCTGACAGTATCCTCTCCAAGAATACCCGCAGCATCTCCAGACTCGTACCGGATCACCCAAGACTGTCCATTCTTAACAAAAGTACTAGATTTGGTAGAATCGAATTTGCTCTTCTTATTGCAATTAGTTCTAAAATCTCACGAACACATAAATTGGTATTTCTTCCAAATCGACTACTCACGTGCAAGTGGGTCCTGGAATCCACAAATTCGCCGATCCGGTATCCAACACAACAATGAAGCTCTGGTCTGGAGTACCAATGGTAATGTTTCCGAGGTACTCGTAATCTCCAAAGTCGTTGACTTTTTGTGGAAGACTGGCCAGCATTTTTGGGGAGGACGGGCGTATTTTCTCTTGATATTCCACATAAGCAGCGTACTCTCCACTACGGAGCAACTCCATCTTCCTGGATTCTCTCCATTGGATCTTGTGTTGGTGGACAAGGGCAGAAGCCAGGCCAAAAATGGCTAATAGGATGAACACCTTCATGTATTCTGGAAAAAAGTACGTTGAGTGGGTAATGCAGCTTGAAAGCTCAGATGGATTGATTGTCATTTTCTCCTTGCTTTTATACTTTTCAGTTAACGTATCCTAGCCACGGAACTAGCATGACGTTACATCCCATCTGCTACTCCAAGCGTCACGGATGGCTCAATTGTCACCATACTCCGGGTGCGAAGGTTCCTCTCGATTCCTAATCAGTTCATTTTCAAATCAACTCTTTGTTATCTTCTAGCTCATAAACGTTGTCCTGTAAGCTTTTCGCACCCGGGAAGTTAATAATGATAACTGGAG</canonical>
            <polymorphic>ATAAGGGGTGGAACCACTCCGTCGACAGCGAGAGAGGTGAAGGCAAGTCCAAGGATTCCATCAGTAGCATCTTGTTTGAAATCAGCAGATATTTTGCTAGCTATTCCAAAGGTGGTTGATGGGATAGCAAGTTGGGATTCACCCTTGGCTCCGAACTGAATTATTAGTTAAGACATTATGGGTATGATTTCGTGATGAACTCACTCTGACAGTATCCTCTCCAAGAATACCCGCAGCATCTCCAGACTCGTACCGGATCACCCAAGACTGTCCATTCTTAACAAAAGTACTAGATTTGGTAGAATCGAATTTGCTCTTCTTATTGCAATTAGTTCTAAAATCTCACGAACACATAAATTGGTATTTCTTCCAAATCGACTACTCACGTGCAAGTGGGTCCTGGAATCCACAAATTCGCCGATCCGGTATCCAACACAACAATGAAGCTCTGGTCTGGAGTACCAATGGTAATGTTTCCGAGGTACTCGTAATCTCCAAARTCGTTGACTTTTTGTGGAAGACTGGCCAGCATTTTTGGGGAGGACGGGCGTATTTTCTCTTGATATTCCACATAAGCAGCGTACTCTCCACTACGGAGCAACTCCATCTTCCTGGATTCTCTCCATTGGATCTTGTGTTGGTGGACAAGGGCAGAAGCCAGGCCAAAAATGGCTAATAGGATGAACACCTTCATGTATTCTGGAAAAAAGTACGTTGAGTGGGTAATGCAGCTTGAAAGCTCAGATGGATTGATTGTCATTTTCTCCTTGCTTTTATACTTTTCAGTTAACGTATCCTAGCCACGGAACTAGCATGACGTTACATCCCATCTGCTACTCCAAGCGTCACGGATGGCTCAATTGTCACCATACTCCGGGTGCGAAGGTTCCTCTCGATTCCTAATCAGTTCATTTTCAAATCAACTCTTTGTTATCTTCTAGCTCATAAACGTTGTCCTGTAAGCTTTTCGCACCCGGGAAGTTAATAATGATAACTGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGGTCTGGAGTACCAATG</pcr_primer_p1>
		<pcr_primer_p2>TACATGAAGGTGTTCATCCTATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTGGTCTGGAGTACCAATGGTAATGTTTCCGAGGTACTCGTAATCTCCAAAGTCGTTGACTTTTTGTGGAAGACTGGCCAGCATTTTTGGGGAGGACGGGCGTATTTTCTCTTGATATTCCACATAAGCAGCGTACTCTCCACTACGGAGCAACTCCATCTTCCTGGATTCTCTCCATTGGATCTTGTGTTGGTGGACAAGGGCAGAAGCCAGGCCAAAAATGGCTAATAGGATGAACACCTTCATGTA</canonical_amplicon>
		<polymorphic_amplicon>TCTGGTCTGGAGTACCAATGGTAATGTTTCCGAGGTACTCGTAATCTCCAAARTCGTTGACTTTTTGTGGAAGACTGGCCAGCATTTTTGGGGAGGACGGGCGTATTTTCTCTTGATATTCCACATAAGCAGCGTACTCTCCACTACGGAGCAACTCCATCTTCCTGGATTCTCTCCATTGGATCTTGTGTTGGTGGACAAGGGCAGAAGCCAGGCCAAAAATGGCTAATAGGATGAACACCTTCATGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4935</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>383778</contig_pos>
        <strand>+</strand>
        <context>AAGTGGGTCC[C/T]GGAATCCACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACATAAATTGGTATTTCTTCCAAATCGACTACTCACGTGCAAGTGGGTCC</left_flank>
        <right_flank>GGAATCCACAAATTCGCCGATCCGGTATCCAACACAACAATGAAGCTCTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGGTGAAGACTCCTCCTCCGACGTTGTTGAGGGCTCCTCTGTGCTCAAGGAAGACAGTGAATAGTGGCTGATCGAGGATTCCTTGGTTGATAGCGTTGATAAGGGGTGGAACCACTCCGTCGACAGCGAGAGAGGTGAAGGCAAGTCCAAGGATTCCATCAGTAGCATCTTGTTTGAAATCAGCAGATATTTTGCTAGCTATTCCAAAGGTGGTTGATGGGATAGCAAGTTGGGATTCACCCTTGGCTCCGAACTGAATTATTAGTTAAGACATTATGGGTATGATTTCGTGATGAACTCACTCTGACAGTATCCTCTCCAAGAATACCCGCAGCATCTCCAGACTCGTACCGGATCACCCAAGACTGTCCATTCTTAACAAAAGTACTAGATTTGGTAGAATCGAATTTGCTCTTCTTATTGCAATTAGTTCTAAAATCTCACGAACACATAAATTGGTATTTCTTCCAAATCGACTACTCACGTGCAAGTGGGTCCTGGAATCCACAAATTCGCCGATCCGGTATCCAACACAACAATGAAGCTCTGGTCTGGAGTACCAATGGTAATGTTTCCGAGGTACTCGTAATCTCCAAAGTCGTTGACTTTTTGTGGAAGACTGGCCAGCATTTTTGGGGAGGACGGGCGTATTTTCTCTTGATATTCCACATAAGCAGCGTACTCTCCACTACGGAGCAACTCCATCTTCCTGGATTCTCTCCATTGGATCTTGTGTTGGTGGACAAGGGCAGAAGCCAGGCCAAAAATGGCTAATAGGATGAACACCTTCATGTATTCTGGAAAAAAGTACGTTGAGTGGGTAATGCAGCTTGAAAGCTCAGATGGATTGATTGTCATTTTCTCCTTGCTTTTATACTTTTCAGTTAACGTATCCTAGCCACGGAACTAGCATGACGTTACATCCCATCTGCTACTCCAAGCGTCACGGATGGCTCAATTGTCACCATACTCCGGGTGCGAAGGTTCCTCTCGATTCCT</canonical>
            <polymorphic>TAGGTGAAGACTCCTCCTCCGACGTTGTTGAGGGCTCCTCTGTGCTCAAGGAAGACAGTGAATAGTGGCTGATCGAGGATTCCTTGGTTGATAGCGTTGATAAGGGGTGGAACCACTCCGTCGACAGCGAGAGAGGTGAAGGCAAGTCCAAGGATTCCATCAGTAGCATCTTGTTTGAAATCAGCAGATATTTTGCTAGCTATTCCAAAGGTGGTTGATGGGATAGCAAGTTGGGATTCACCCTTGGCTCCGAACTGAATTATTAGTTAAGACATTATGGGTATGATTTCGTGATGAACTCACTCTGACAGTATCCTCTCCAAGAATACCCGCAGCATCTCCAGACTCGTACCGGATCACCCAAGACTGTCCATTCTTAACAAAAGTACTAGATTTGGTAGAATCGAATTTGCTCTTCTTATTGCAATTAGTTCTAAAATCTCACGAACACATAAATTGGTATTTCTTCCAAATCGACTACTCACGTGCAAGTGGGTCCYGGAATCCACAAATTCGCCGATCCGGTATCCAACACAACAATGAAGCTCTGGTCTGGAGTACCAATGGTAATGTTTCCGAGGTACTCGTAATCTCCAAAGTCGTTGACTTTTTGTGGAAGACTGGCCAGCATTTTTGGGGAGGACGGGCGTATTTTCTCTTGATATTCCACATAAGCAGCGTACTCTCCACTACGGAGCAACTCCATCTTCCTGGATTCTCTCCATTGGATCTTGTGTTGGTGGACAAGGGCAGAAGCCAGGCCAAAAATGGCTAATAGGATGAACACCTTCATGTATTCTGGAAAAAAGTACGTTGAGTGGGTAATGCAGCTTGAAAGCTCAGATGGATTGATTGTCATTTTCTCCTTGCTTTTATACTTTTCAGTTAACGTATCCTAGCCACGGAACTAGCATGACGTTACATCCCATCTGCTACTCCAAGCGTCACGGATGGCTCAATTGTCACCATACTCCGGGTGCGAAGGTTCCTCTCGATTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>499 242 212 47</canonical_bands>
                <polymorphic_bands>711 242 47</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGACAGTATCCTCTCCAAGAA</pcr_primer_p1>
		<pcr_primer_p2>GACCAGAGCTTCATTGTTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTGACAGTATCCTCTCCAAGAATACCCGCAGCATCTCCAGACTCGTACCGGATCACCCAAGACTGTCCATTCTTAACAAAAGTACTAGATTTGGTAGAATCGAATTTGCTCTTCTTATTGCAATTAGTTCTAAAATCTCACGAACACATAAATTGGTATTTCTTCCAAATCGACTACTCACGTGCAAGTGGGTCCTGGAATCCACAAATTCGCCGATCCGGTATCCAACACAACAATGAAGCTCTGGTC</canonical_amplicon>
		<polymorphic_amplicon>CTGACAGTATCCTCTCCAAGAATACCCGCAGCATCTCCAGACTCGTACCGGATCACCCAAGACTGTCCATTCTTAACAAAAGTACTAGATTTGGTAGAATCGAATTTGCTCTTCTTATTGCAATTAGTTCTAAAATCTCACGAACACATAAATTGGTATTTCTTCCAAATCGACTACTCACGTGCAAGTGGGTCCYGGAATCCACAAATTCGCCGATCCGGTATCCAACACAACAATGAAGCTCTGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4936</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>383724</contig_pos>
        <strand>+</strand>
        <context>AAAATCTCAC[A/G]AACACATAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGTAGAATCGAATTTGCTCTTCTTATTGCAATTAGTTCTAAAATCTCAC</left_flank>
        <right_flank>AACACATAAATTGGTATTTCTTCCAAATCGACTACTCACGTGCAAGTGGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAGTGGCTGGTATCCGACGACTGGTCCACAGTTAGTGTTATCAATGGCTCCATAGGTGAAGACTCCTCCTCCGACGTTGTTGAGGGCTCCTCTGTGCTCAAGGAAGACAGTGAATAGTGGCTGATCGAGGATTCCTTGGTTGATAGCGTTGATAAGGGGTGGAACCACTCCGTCGACAGCGAGAGAGGTGAAGGCAAGTCCAAGGATTCCATCAGTAGCATCTTGTTTGAAATCAGCAGATATTTTGCTAGCTATTCCAAAGGTGGTTGATGGGATAGCAAGTTGGGATTCACCCTTGGCTCCGAACTGAATTATTAGTTAAGACATTATGGGTATGATTTCGTGATGAACTCACTCTGACAGTATCCTCTCCAAGAATACCCGCAGCATCTCCAGACTCGTACCGGATCACCCAAGACTGTCCATTCTTAACAAAAGTACTAGATTTGGTAGAATCGAATTTGCTCTTCTTATTGCAATTAGTTCTAAAATCTCACGAACACATAAATTGGTATTTCTTCCAAATCGACTACTCACGTGCAAGTGGGTCCTGGAATCCACAAATTCGCCGATCCGGTATCCAACACAACAATGAAGCTCTGGTCTGGAGTACCAATGGTAATGTTTCCGAGGTACTCGTAATCTCCAAAGTCGTTGACTTTTTGTGGAAGACTGGCCAGCATTTTTGGGGAGGACGGGCGTATTTTCTCTTGATATTCCACATAAGCAGCGTACTCTCCACTACGGAGCAACTCCATCTTCCTGGATTCTCTCCATTGGATCTTGTGTTGGTGGACAAGGGCAGAAGCCAGGCCAAAAATGGCTAATAGGATGAACACCTTCATGTATTCTGGAAAAAAGTACGTTGAGTGGGTAATGCAGCTTGAAAGCTCAGATGGATTGATTGTCATTTTCTCCTTGCTTTTATACTTTTCAGTTAACGTATCCTAGCCACGGAACTAGCATGACGTTACATCCCATCTGCTACTCCAAGCGTC</canonical>
            <polymorphic>GAGAGTGGCTGGTATCCGACGACTGGTCCACAGTTAGTGTTATCAATGGCTCCATAGGTGAAGACTCCTCCTCCGACGTTGTTGAGGGCTCCTCTGTGCTCAAGGAAGACAGTGAATAGTGGCTGATCGAGGATTCCTTGGTTGATAGCGTTGATAAGGGGTGGAACCACTCCGTCGACAGCGAGAGAGGTGAAGGCAAGTCCAAGGATTCCATCAGTAGCATCTTGTTTGAAATCAGCAGATATTTTGCTAGCTATTCCAAAGGTGGTTGATGGGATAGCAAGTTGGGATTCACCCTTGGCTCCGAACTGAATTATTAGTTAAGACATTATGGGTATGATTTCGTGATGAACTCACTCTGACAGTATCCTCTCCAAGAATACCCGCAGCATCTCCAGACTCGTACCGGATCACCCAAGACTGTCCATTCTTAACAAAAGTACTAGATTTGGTAGAATCGAATTTGCTCTTCTTATTGCAATTAGTTCTAAAATCTCACRAACACATAAATTGGTATTTCTTCCAAATCGACTACTCACGTGCAAGTGGGTCCTGGAATCCACAAATTCGCCGATCCGGTATCCAACACAACAATGAAGCTCTGGTCTGGAGTACCAATGGTAATGTTTCCGAGGTACTCGTAATCTCCAAAGTCGTTGACTTTTTGTGGAAGACTGGCCAGCATTTTTGGGGAGGACGGGCGTATTTTCTCTTGATATTCCACATAAGCAGCGTACTCTCCACTACGGAGCAACTCCATCTTCCTGGATTCTCTCCATTGGATCTTGTGTTGGTGGACAAGGGCAGAAGCCAGGCCAAAAATGGCTAATAGGATGAACACCTTCATGTATTCTGGAAAAAAGTACGTTGAGTGGGTAATGCAGCTTGAAAGCTCAGATGGATTGATTGTCATTTTCTCCTTGCTTTTATACTTTTCAGTTAACGTATCCTAGCCACGGAACTAGCATGACGTTACATCCCATCTGCTACTCCAAGCGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>344 147 141 110 105 102 51</canonical_bands>
                <polymorphic_bands>344 212 147 141 105 51</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACTCACTCTGACAGTATCCTC</pcr_primer_p1>
		<pcr_primer_p2>TTCATTGTTGTGTTGGATACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAACTCACTCTGACAGTATCCTCTCCAAGAATACCCGCAGCATCTCCAGACTCGTACCGGATCACCCAAGACTGTCCATTCTTAACAAAAGTACTAGATTTGGTAGAATCGAATTTGCTCTTCTTATTGCAATTAGTTCTAAAATCTCACGAACACATAAATTGGTATTTCTTCCAAATCGACTACTCACGTGCAAGTGGGTCCTGGAATCCACAAATTCGCCGATCCGGTATCCAACACAACAATGAA</canonical_amplicon>
		<polymorphic_amplicon>GAACTCACTCTGACAGTATCCTCTCCAAGAATACCCGCAGCATCTCCAGACTCGTACCGGATCACCCAAGACTGTCCATTCTTAACAAAAGTACTAGATTTGGTAGAATCGAATTTGCTCTTCTTATTGCAATTAGTTCTAAAATCTCACRAACACATAAATTGGTATTTCTTCCAAATCGACTACTCACGTGCAAGTGGGTCCTGGAATCCACAAATTCGCCGATCCGGTATCCAACACAACAATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4937</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>383711</contig_pos>
        <strand>+</strand>
        <context>TGCAATTAGT[C/T]CTAAAATCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGTACTAGATTTGGTAGAATCGAATTTGCTCTTCTTATTGCAATTAGT</left_flank>
        <right_flank>CTAAAATCTCACGAACACATAAATTGGTATTTCTTCCAAATCGACTACTC</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAAGTGGCAGAAGAGAGTGGCTGGTATCCGACGACTGGTCCACAGTTAGTGTTATCAATGGCTCCATAGGTGAAGACTCCTCCTCCGACGTTGTTGAGGGCTCCTCTGTGCTCAAGGAAGACAGTGAATAGTGGCTGATCGAGGATTCCTTGGTTGATAGCGTTGATAAGGGGTGGAACCACTCCGTCGACAGCGAGAGAGGTGAAGGCAAGTCCAAGGATTCCATCAGTAGCATCTTGTTTGAAATCAGCAGATATTTTGCTAGCTATTCCAAAGGTGGTTGATGGGATAGCAAGTTGGGATTCACCCTTGGCTCCGAACTGAATTATTAGTTAAGACATTATGGGTATGATTTCGTGATGAACTCACTCTGACAGTATCCTCTCCAAGAATACCCGCAGCATCTCCAGACTCGTACCGGATCACCCAAGACTGTCCATTCTTAACAAAAGTACTAGATTTGGTAGAATCGAATTTGCTCTTCTTATTGCAATTAGTTCTAAAATCTCACGAACACATAAATTGGTATTTCTTCCAAATCGACTACTCACGTGCAAGTGGGTCCTGGAATCCACAAATTCGCCGATCCGGTATCCAACACAACAATGAAGCTCTGGTCTGGAGTACCAATGGTAATGTTTCCGAGGTACTCGTAATCTCCAAAGTCGTTGACTTTTTGTGGAAGACTGGCCAGCATTTTTGGGGAGGACGGGCGTATTTTCTCTTGATATTCCACATAAGCAGCGTACTCTCCACTACGGAGCAACTCCATCTTCCTGGATTCTCTCCATTGGATCTTGTGTTGGTGGACAAGGGCAGAAGCCAGGCCAAAAATGGCTAATAGGATGAACACCTTCATGTATTCTGGAAAAAAGTACGTTGAGTGGGTAATGCAGCTTGAAAGCTCAGATGGATTGATTGTCATTTTCTCCTTGCTTTTATACTTTTCAGTTAACGTATCCTAGCCACGGAACTAGCATGACGTTACATCCCATCTGC</canonical>
            <polymorphic>GTAAGTGGCAGAAGAGAGTGGCTGGTATCCGACGACTGGTCCACAGTTAGTGTTATCAATGGCTCCATAGGTGAAGACTCCTCCTCCGACGTTGTTGAGGGCTCCTCTGTGCTCAAGGAAGACAGTGAATAGTGGCTGATCGAGGATTCCTTGGTTGATAGCGTTGATAAGGGGTGGAACCACTCCGTCGACAGCGAGAGAGGTGAAGGCAAGTCCAAGGATTCCATCAGTAGCATCTTGTTTGAAATCAGCAGATATTTTGCTAGCTATTCCAAAGGTGGTTGATGGGATAGCAAGTTGGGATTCACCCTTGGCTCCGAACTGAATTATTAGTTAAGACATTATGGGTATGATTTCGTGATGAACTCACTCTGACAGTATCCTCTCCAAGAATACCCGCAGCATCTCCAGACTCGTACCGGATCACCCAAGACTGTCCATTCTTAACAAAAGTACTAGATTTGGTAGAATCGAATTTGCTCTTCTTATTGCAATTAGTYCTAAAATCTCACGAACACATAAATTGGTATTTCTTCCAAATCGACTACTCACGTGCAAGTGGGTCCTGGAATCCACAAATTCGCCGATCCGGTATCCAACACAACAATGAAGCTCTGGTCTGGAGTACCAATGGTAATGTTTCCGAGGTACTCGTAATCTCCAAAGTCGTTGACTTTTTGTGGAAGACTGGCCAGCATTTTTGGGGAGGACGGGCGTATTTTCTCTTGATATTCCACATAAGCAGCGTACTCTCCACTACGGAGCAACTCCATCTTCCTGGATTCTCTCCATTGGATCTTGTGTTGGTGGACAAGGGCAGAAGCCAGGCCAAAAATGGCTAATAGGATGAACACCTTCATGTATTCTGGAAAAAAGTACGTTGAGTGGGTAATGCAGCTTGAAAGCTCAGATGGATTGATTGTCATTTTCTCCTTGCTTTTATACTTTTCAGTTAACGTATCCTAGCCACGGAACTAGCATGACGTTACATCCCATCTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTCACTCTGACAGTATCCTC</pcr_primer_p1>
		<pcr_primer_p2>TTCATTGTTGTGTTGGATACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAACTCACTCTGACAGTATCCTCTCCAAGAATACCCGCAGCATCTCCAGACTCGTACCGGATCACCCAAGACTGTCCATTCTTAACAAAAGTACTAGATTTGGTAGAATCGAATTTGCTCTTCTTATTGCAATTAGTTCTAAAATCTCACGAACACATAAATTGGTATTTCTTCCAAATCGACTACTCACGTGCAAGTGGGTCCTGGAATCCACAAATTCGCCGATCCGGTATCCAACACAACAATGAA</canonical_amplicon>
		<polymorphic_amplicon>GAACTCACTCTGACAGTATCCTCTCCAAGAATACCCGCAGCATCTCCAGACTCGTACCGGATCACCCAAGACTGTCCATTCTTAACAAAAGTACTAGATTTGGTAGAATCGAATTTGCTCTTCTTATTGCAATTAGTYCTAAAATCTCACGAACACATAAATTGGTATTTCTTCCAAATCGACTACTCACGTGCAAGTGGGTCCTGGAATCCACAAATTCGCCGATCCGGTATCCAACACAACAATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4938</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>383630</contig_pos>
        <strand>+</strand>
        <context>CAGACTCGTA[C/T]CGGATCACCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTCTGACAGTATCCTCTCCAAGAATACCCGCAGCATCTCCAGACTCGTA</left_flank>
        <right_flank>CGGATCACCCAAGACTGTCCATTCTTAACAAAAGTACTAGATTTGGTAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTCCTGTATCGGAGATGACTTCAGCGGCCTTGCTGCTAGAGTAAGATCCAAGCTTGAATCCAGCAGCCTTGAATTGGTAGTAAGTGGCAGAAGAGAGTGGCTGGTATCCGACGACTGGTCCACAGTTAGTGTTATCAATGGCTCCATAGGTGAAGACTCCTCCTCCGACGTTGTTGAGGGCTCCTCTGTGCTCAAGGAAGACAGTGAATAGTGGCTGATCGAGGATTCCTTGGTTGATAGCGTTGATAAGGGGTGGAACCACTCCGTCGACAGCGAGAGAGGTGAAGGCAAGTCCAAGGATTCCATCAGTAGCATCTTGTTTGAAATCAGCAGATATTTTGCTAGCTATTCCAAAGGTGGTTGATGGGATAGCAAGTTGGGATTCACCCTTGGCTCCGAACTGAATTATTAGTTAAGACATTATGGGTATGATTTCGTGATGAACTCACTCTGACAGTATCCTCTCCAAGAATACCCGCAGCATCTCCAGACTCGTACCGGATCACCCAAGACTGTCCATTCTTAACAAAAGTACTAGATTTGGTAGAATCGAATTTGCTCTTCTTATTGCAATTAGTTCTAAAATCTCACGAACACATAAATTGGTATTTCTTCCAAATCGACTACTCACGTGCAAGTGGGTCCTGGAATCCACAAATTCGCCGATCCGGTATCCAACACAACAATGAAGCTCTGGTCTGGAGTACCAATGGTAATGTTTCCGAGGTACTCGTAATCTCCAAAGTCGTTGACTTTTTGTGGAAGACTGGCCAGCATTTTTGGGGAGGACGGGCGTATTTTCTCTTGATATTCCACATAAGCAGCGTACTCTCCACTACGGAGCAACTCCATCTTCCTGGATTCTCTCCATTGGATCTTGTGTTGGTGGACAAGGGCAGAAGCCAGGCCAAAAATGGCTAATAGGATGAACACCTTCATGTATTCTGGAAAAAAGTACGTTGAGTGGGTAATGCAGCTTGAAAGCTCAGATGGATTGA</canonical>
            <polymorphic>GGTTCCTGTATCGGAGATGACTTCAGCGGCCTTGCTGCTAGAGTAAGATCCAAGCTTGAATCCAGCAGCCTTGAATTGGTAGTAAGTGGCAGAAGAGAGTGGCTGGTATCCGACGACTGGTCCACAGTTAGTGTTATCAATGGCTCCATAGGTGAAGACTCCTCCTCCGACGTTGTTGAGGGCTCCTCTGTGCTCAAGGAAGACAGTGAATAGTGGCTGATCGAGGATTCCTTGGTTGATAGCGTTGATAAGGGGTGGAACCACTCCGTCGACAGCGAGAGAGGTGAAGGCAAGTCCAAGGATTCCATCAGTAGCATCTTGTTTGAAATCAGCAGATATTTTGCTAGCTATTCCAAAGGTGGTTGATGGGATAGCAAGTTGGGATTCACCCTTGGCTCCGAACTGAATTATTAGTTAAGACATTATGGGTATGATTTCGTGATGAACTCACTCTGACAGTATCCTCTCCAAGAATACCCGCAGCATCTCCAGACTCGTAYCGGATCACCCAAGACTGTCCATTCTTAACAAAAGTACTAGATTTGGTAGAATCGAATTTGCTCTTCTTATTGCAATTAGTTCTAAAATCTCACGAACACATAAATTGGTATTTCTTCCAAATCGACTACTCACGTGCAAGTGGGTCCTGGAATCCACAAATTCGCCGATCCGGTATCCAACACAACAATGAAGCTCTGGTCTGGAGTACCAATGGTAATGTTTCCGAGGTACTCGTAATCTCCAAAGTCGTTGACTTTTTGTGGAAGACTGGCCAGCATTTTTGGGGAGGACGGGCGTATTTTCTCTTGATATTCCACATAAGCAGCGTACTCTCCACTACGGAGCAACTCCATCTTCCTGGATTCTCTCCATTGGATCTTGTGTTGGTGGACAAGGGCAGAAGCCAGGCCAAAAATGGCTAATAGGATGAACACCTTCATGTATTCTGGAAAAAAGTACGTTGAGTGGGTAATGCAGCTTGAAAGCTCAGATGGATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>498 172 129 99 42 37 23</canonical_bands>
                <polymorphic_bands>535 172 129 99 42 23</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>499 331 170</canonical_bands>
                <polymorphic_bands>669 331</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 330 170</canonical_bands>
                <polymorphic_bands>670 330</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTTGAAATCAGCAGATATTTT</pcr_primer_p1>
		<pcr_primer_p2>TAAGAAGAGCAAATTCGATTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTTTGAAATCAGCAGATATTTTGCTAGCTATTCCAAAGGTGGTTGATGGGATAGCAAGTTGGGATTCACCCTTGGCTCCGAACTGAATTATTAGTTAAGACATTATGGGTATGATTTCGTGATGAACTCACTCTGACAGTATCCTCTCCAAGAATACCCGCAGCATCTCCAGACTCGTACCGGATCACCCAAGACTGTCCATTCTTAACAAAAGTACTAGATTTGGTAGAATCGAATTTGCTCTTCTTA</canonical_amplicon>
		<polymorphic_amplicon>TGTTTGAAATCAGCAGATATTTTGCTAGCTATTCCAAAGGTGGTTGATGGGATAGCAAGTTGGGATTCACCCTTGGCTCCGAACTGAATTATTAGTTAAGACATTATGGGTATGATTTCGTGATGAACTCACTCTGACAGTATCCTCTCCAAGAATACCCGCAGCATCTCCAGACTCGTAYCGGATCACCCAAGACTGTCCATTCTTAACAAAAGTACTAGATTTGGTAGAATCGAATTTGCTCTTCTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4939</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>417263</contig_pos>
        <strand></strand>
        <context>ATCTTTGAAC[T/C]CTTAAAACTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCGACGGAGCACCAGCTAGCTGATGAAGTTATATAATTCGATCTTTGAAC</left_flank>
        <right_flank>CTTAAAACTCTTCAGATCCCCTTGATGAATTATTCCTCTTTTTCCAACAA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAATCGACAGAATCGACATTCAACGATTCGACAAGGCTTTTTGTAGATAAAAATCGATAAAAATCGAAAAACCGCTCTCCAGGTGACTTATTAGGCTGTTGCGAACCCTACAGTTCTAGGGGTCGTATCTTCTGATATTGGCCCACTTGGTCACAAGACATTAAGCTTAAATATAAGATACGTATAATTTGACGTGACCTTTTGAGAACGTGAGGAGCTTAACGACGAACGAATAAAAACTAGGTTGAATCGCGCCAAAGGCGCACCAGTCAGATGTTTGAAGTGCCCGAGGCGCGGCAAACAGGCTGGTATATTAAAGTAAAATCTACGCACGTCTGTTGGTCCTGGTGTCCCGATGTGAACTTTTGAAAAGCTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCTAGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGATCCCCTTGATGAATTATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTTCCGAGTGGTTCCGACATTTTGTGCCTGTGTGAGTTGTTACAGAAAGT</canonical>
            <polymorphic>TGAAAATCGACAGAATCGACATTCAACGATTCGACAAGGCTTTTTGTAGATAAAAATCGATAAAAATCGAAAAACCGCTCTCCAGGTGACTTATTAGGCTGTTGCGAACCCTACAGTTCTAGGGGTCGTATCTTCTGATATTGGCCCACTTGGTCACAAGACATTAAGCTTAAATATAAGATACGTATAATTTGACGTGACCTTTTGAGAACGTGAGGAGCTTAACGACGAACGAATAAAAACTAGGTTGAATCGCGCCAAAGGCGCACCAGTCAGATGTTTGAAGTGCCCGAGGCGCGGCAAACAGGCTGGTATATTAAAGTAAAATCTACGCACGTCTGTTGGTCCTGGTGTCCCGATGTGAACTTTTGAAAAGCTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCTAGCTGATGAAGTTATATAATTCGATCTTTGAACYCTTAAAACTCTTCAGATCCCCTTGATGAATTATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTTCCGAGTGGTTCCGACATTTTGTGCCTGTGTGAGTTGTTACAGAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGGGGTCGTATCTTCTGATATT</pcr_primer_p1>
		<pcr_primer_p2>AAAATTGTTGGAAAAAGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>435</pcr_amplicon_size>
		<canonical_amplicon>TAGGGGTCGTATCTTCTGATATTGGCCCACTTGGTCACAAGACATTAAGCTTAAATATAAGATACGTATAATTTGACGTGACCTTTTGAGAACGTGAGGAGCTTAACGACGAACGAATAAAAACTAGGTTGAATCGCGCCAAAGGCGCACCAGTCAGATGTTTGAAGTGCCCGAGGCGCGGCAAACAGGCTGGTATATTAAAGTAAAATCTACGCACGTCTGTTGGTCCTGGTGTCCCGATGTGAACTTTTGAAAAGCTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCTAGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGATCCCCTTGATGAATTATTCCTCTTTTTCCAACAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TAGGGGTCGTATCTTCTGATATTGGCCCACTTGGTCACAAGACATTAAGCTTAAATATAAGATACGTATAATTTGACGTGACCTTTTGAGAACGTGAGGAGCTTAACGACGAACGAATAAAAACTAGGTTGAATCGCGCCAAAGGCGCACCAGTCAGATGTTTGAAGTGCCCGAGGCGCGGCAAACAGGCTGGTATATTAAAGTAAAATCTACGCACGTCTGTTGGTCCTGGTGTCCCGATGTGAACTTTTGAAAAGCTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCTAGCTGATGAAGTTATATAATTCGATCTTTGAACYCTTAAAACTCTTCAGATCCCCTTGATGAATTATTCCTCTTTTTCCAACAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4940</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>417365</contig_pos>
        <strand>+</strand>
        <context>AACTAATTTG[C/T]AATACTATTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTG</left_flank>
        <right_flank>AATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCGAACCCTACAGTTCTAGGGGTCGTATCTTCTGATATTGGCCCACTTGGTCACAAGACATTAAGCTTAAATATAAGATACGTATAATTTGACGTGACCTTTTGAGAACGTGAGGAGCTTAACGACGAACGAATAAAAACTAGGTTGAATCGCGCCAAAGGCGCACCAGTCAGATGTTTGAAGTGCCCGAGGCGCGGCAAACAGGCTGGTATATTAAAGTAAAATCTACGCACGTCTGTTGGTCCTGGTGTCCCGATGTGAACTTTTGAAAAGCTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCTAGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGATCCCCTTGATGAATTATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTTCCGAGTGGTTCCGACATTTTGTGCCTGTGTGAGTTGTTACAGAAAGTTGTACCATATAGAAGTTGATTTTGCAGTCCGGCGACTTTGAAACCCAAAATGCTCGTCGGGACGGCGGCAAGTCGACGTTTGGCACCAAATATTTTGATGAT</canonical>
            <polymorphic>TGCGAACCCTACAGTTCTAGGGGTCGTATCTTCTGATATTGGCCCACTTGGTCACAAGACATTAAGCTTAAATATAAGATACGTATAATTTGACGTGACCTTTTGAGAACGTGAGGAGCTTAACGACGAACGAATAAAAACTAGGTTGAATCGCGCCAAAGGCGCACCAGTCAGATGTTTGAAGTGCCCGAGGCGCGGCAAACAGGCTGGTATATTAAAGTAAAATCTACGCACGTCTGTTGGTCCTGGTGTCCCGATGTGAACTTTTGAAAAGCTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCTAGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGATCCCCTTGATGAATTATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGYAATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTTCCGAGTGGTTCCGACATTTTGTGCCTGTGTGAGTTGTTACAGAAAGTTGTACCATATAGAAGTTGATTTTGCAGTCCGGCGACTTTGAAACCCAAAATGCTCGTCGGGACGGCGGCAAGTCGACGTTTGGCACCAAATATTTTGATGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTCCTCTTTTTCCAACAATTT</pcr_primer_p1>
		<pcr_primer_p2>CGTGATATCCATGAACACTTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACG</canonical_amplicon>
		<polymorphic_amplicon>TATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGYAATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4941</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>417383</contig_pos>
        <strand>+</strand>
        <context>TTAACGTCTT[C/T]TATTGTATGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTT</left_flank>
        <right_flank>TATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGGGTCGTATCTTCTGATATTGGCCCACTTGGTCACAAGACATTAAGCTTAAATATAAGATACGTATAATTTGACGTGACCTTTTGAGAACGTGAGGAGCTTAACGACGAACGAATAAAAACTAGGTTGAATCGCGCCAAAGGCGCACCAGTCAGATGTTTGAAGTGCCCGAGGCGCGGCAAACAGGCTGGTATATTAAAGTAAAATCTACGCACGTCTGTTGGTCCTGGTGTCCCGATGTGAACTTTTGAAAAGCTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCTAGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGATCCCCTTGATGAATTATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTTCCGAGTGGTTCCGACATTTTGTGCCTGTGTGAGTTGTTACAGAAAGTTGTACCATATAGAAGTTGATTTTGCAGTCCGGCGACTTTGAAACCCAAAATGCTCGTCGGGACGGCGGCAAGTCGACGTTTGGCACCAAATATTTTGATGATGAAAATTTTGAGATTCTA</canonical>
            <polymorphic>AGGGGTCGTATCTTCTGATATTGGCCCACTTGGTCACAAGACATTAAGCTTAAATATAAGATACGTATAATTTGACGTGACCTTTTGAGAACGTGAGGAGCTTAACGACGAACGAATAAAAACTAGGTTGAATCGCGCCAAAGGCGCACCAGTCAGATGTTTGAAGTGCCCGAGGCGCGGCAAACAGGCTGGTATATTAAAGTAAAATCTACGCACGTCTGTTGGTCCTGGTGTCCCGATGTGAACTTTTGAAAAGCTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCTAGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGATCCCCTTGATGAATTATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTTYTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTTCCGAGTGGTTCCGACATTTTGTGCCTGTGTGAGTTGTTACAGAAAGTTGTACCATATAGAAGTTGATTTTGCAGTCCGGCGACTTTGAAACCCAAAATGCTCGTCGGGACGGCGGCAAGTCGACGTTTGGCACCAAATATTTTGATGATGAAAATTTTGAGATTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTCCTCTTTTTCCAACAATTT</pcr_primer_p1>
		<pcr_primer_p2>CGTGATATCCATGAACACTTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACG</canonical_amplicon>
		<polymorphic_amplicon>TATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTTYTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4942</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>417452</contig_pos>
        <strand>+</strand>
        <context>TCGGYTTACT[C/T]TGCTCCGCCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACT</left_flank>
        <right_flank>TGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGACGTGACCTTTTGAGAACGTGAGGAGCTTAACGACGAACGAATAAAAACTAGGTTGAATCGCGCCAAAGGCGCACCAGTCAGATGTTTGAAGTGCCCGAGGCGCGGCAAACAGGCTGGTATATTAAAGTAAAATCTACGCACGTCTGTTGGTCCTGGTGTCCCGATGTGAACTTTTGAAAAGCTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCTAGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGATCCCCTTGATGAATTATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTTCCGAGTGGTTCCGACATTTTGTGCCTGTGTGAGTTGTTACAGAAAGTTGTACCATATAGAAGTTGATTTTGCAGTCCGGCGACTTTGAAACCCAAAATGCTCGTCGGGACGGCGGCAAGTCGACGTTTGGCACCAAATATTTTGATGATGAAAATTTTGAGATTCTACACGATAAGAAGTAAAACACATATTTGAATTAAGCCTATGAGGCAAACTTTCAGAGGCATCCTTGCAAT</canonical>
            <polymorphic>ATTTGACGTGACCTTTTGAGAACGTGAGGAGCTTAACGACGAACGAATAAAAACTAGGTTGAATCGCGCCAAAGGCGCACCAGTCAGATGTTTGAAGTGCCCGAGGCGCGGCAAACAGGCTGGTATATTAAAGTAAAATCTACGCACGTCTGTTGGTCCTGGTGTCCCGATGTGAACTTTTGAAAAGCTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCTAGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGATCCCCTTGATGAATTATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTYTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTTCCGAGTGGTTCCGACATTTTGTGCCTGTGTGAGTTGTTACAGAAAGTTGTACCATATAGAAGTTGATTTTGCAGTCCGGCGACTTTGAAACCCAAAATGCTCGTCGGGACGGCGGCAAGTCGACGTTTGGCACCAAATATTTTGATGATGAAAATTTTGAGATTCTACACGATAAGAAGTAAAACACATATTTGAATTAAGCCTATGAGGCAAACTTTCAGAGGCATCCTTGCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTCCTCTTTTTCCAACAATTT</pcr_primer_p1>
		<pcr_primer_p2>CGTGATATCCATGAACACTTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACG</canonical_amplicon>
		<polymorphic_amplicon>TATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTYTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4943</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>417489</contig_pos>
        <strand>+</strand>
        <context>TTCTATTATT[C/T]ATTTTTGTGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATT</left_flank>
        <right_flank>ATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACGAACGAATAAAAACTAGGTTGAATCGCGCCAAAGGCGCACCAGTCAGATGTTTGAAGTGCCCGAGGCGCGGCAAACAGGCTGGTATATTAAAGTAAAATCTACGCACGTCTGTTGGTCCTGGTGTCCCGATGTGAACTTTTGAAAAGCTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCTAGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGATCCCCTTGATGAATTATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTTCCGAGTGGTTCCGACATTTTGTGCCTGTGTGAGTTGTTACAGAAAGTTGTACCATATAGAAGTTGATTTTGCAGTCCGGCGACTTTGAAACCCAAAATGCTCGTCGGGACGGCGGCAAGTCGACGTTTGGCACCAAATATTTTGATGATGAAAATTTTGAGATTCTACACGATAAGAAGTAAAACACATATTTGAATTAAGCCTATGAGGCAAACTTTCAGAGGCATCCTTGCAATGGACAACTACGGTTGGGAGAACACCAACTCTTCGCGG</canonical>
            <polymorphic>GACGAACGAATAAAAACTAGGTTGAATCGCGCCAAAGGCGCACCAGTCAGATGTTTGAAGTGCCCGAGGCGCGGCAAACAGGCTGGTATATTAAAGTAAAATCTACGCACGTCTGTTGGTCCTGGTGTCCCGATGTGAACTTTTGAAAAGCTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCTAGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGATCCCCTTGATGAATTATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTYATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTTCCGAGTGGTTCCGACATTTTGTGCCTGTGTGAGTTGTTACAGAAAGTTGTACCATATAGAAGTTGATTTTGCAGTCCGGCGACTTTGAAACCCAAAATGCTCGTCGGGACGGCGGCAAGTCGACGTTTGGCACCAAATATTTTGATGATGAAAATTTTGAGATTCTACACGATAAGAAGTAAAACACATATTTGAATTAAGCCTATGAGGCAAACTTTCAGAGGCATCCTTGCAATGGACAACTACGGTTGGGAGAACACCAACTCTTCGCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAACGACAGAATTTGAACTAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCGGTGTTCAACTAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAA</canonical_amplicon>
		<polymorphic_amplicon>CAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTYATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4944</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>417521</contig_pos>
        <strand>+</strand>
        <context>CAAAATCATG[C/T]YCAAAAAAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATG</left_flank>
        <right_flank>TCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAGGCGCACCAGTCAGATGTTTGAAGTGCCCGAGGCGCGGCAAACAGGCTGGTATATTAAAGTAAAATCTACGCACGTCTGTTGGTCCTGGTGTCCCGATGTGAACTTTTGAAAAGCTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCTAGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGATCCCCTTGATGAATTATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTTCCGAGTGGTTCCGACATTTTGTGCCTGTGTGAGTTGTTACAGAAAGTTGTACCATATAGAAGTTGATTTTGCAGTCCGGCGACTTTGAAACCCAAAATGCTCGTCGGGACGGCGGCAAGTCGACGTTTGGCACCAAATATTTTGATGATGAAAATTTTGAGATTCTACACGATAAGAAGTAAAACACATATTTGAATTAAGCCTATGAGGCAAACTTTCAGAGGCATCCTTGCAATGGACAACTACGGTTGGGAGAACACCAACTCTTCGCGGTTCTATGTGACATTCCGCGAGACGCCATGGAT</canonical>
            <polymorphic>CAAAGGCGCACCAGTCAGATGTTTGAAGTGCCCGAGGCGCGGCAAACAGGCTGGTATATTAAAGTAAAATCTACGCACGTCTGTTGGTCCTGGTGTCCCGATGTGAACTTTTGAAAAGCTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCTAGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGATCCCCTTGATGAATTATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGYTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTTCCGAGTGGTTCCGACATTTTGTGCCTGTGTGAGTTGTTACAGAAAGTTGTACCATATAGAAGTTGATTTTGCAGTCCGGCGACTTTGAAACCCAAAATGCTCGTCGGGACGGCGGCAAGTCGACGTTTGGCACCAAATATTTTGATGATGAAAATTTTGAGATTCTACACGATAAGAAGTAAAACACATATTTGAATTAAGCCTATGAGGCAAACTTTCAGAGGCATCCTTGCAATGGACAACTACGGTTGGGAGAACACCAACTCTTCGCGGTTCTATGTGACATTCCGCGAGACGCCATGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCTTTCATTCGTTCTATTATT</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGACGCAATTCTTGTATC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGYTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4945</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>417522</contig_pos>
        <strand>+</strand>
        <context>AAAATCATGY[C/T]CAAAAAAGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGT</left_flank>
        <right_flank>CAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGGCGCACCAGTCAGATGTTTGAAGTGCCCGAGGCGCGGCAAACAGGCTGGTATATTAAAGTAAAATCTACGCACGTCTGTTGGTCCTGGTGTCCCGATGTGAACTTTTGAAAAGCTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCTAGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGATCCCCTTGATGAATTATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTTCCGAGTGGTTCCGACATTTTGTGCCTGTGTGAGTTGTTACAGAAAGTTGTACCATATAGAAGTTGATTTTGCAGTCCGGCGACTTTGAAACCCAAAATGCTCGTCGGGACGGCGGCAAGTCGACGTTTGGCACCAAATATTTTGATGATGAAAATTTTGAGATTCTACACGATAAGAAGTAAAACACATATTTGAATTAAGCCTATGAGGCAAACTTTCAGAGGCATCCTTGCAATGGACAACTACGGTTGGGAGAACACCAACTCTTCGCGGTTCTATGTGACATTCCGCGAGACGCCATGGATG</canonical>
            <polymorphic>AAAGGCGCACCAGTCAGATGTTTGAAGTGCCCGAGGCGCGGCAAACAGGCTGGTATATTAAAGTAAAATCTACGCACGTCTGTTGGTCCTGGTGTCCCGATGTGAACTTTTGAAAAGCTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCTAGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGATCCCCTTGATGAATTATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTYCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTTCCGAGTGGTTCCGACATTTTGTGCCTGTGTGAGTTGTTACAGAAAGTTGTACCATATAGAAGTTGATTTTGCAGTCCGGCGACTTTGAAACCCAAAATGCTCGTCGGGACGGCGGCAAGTCGACGTTTGGCACCAAATATTTTGATGATGAAAATTTTGAGATTCTACACGATAAGAAGTAAAACACATATTTGAATTAAGCCTATGAGGCAAACTTTCAGAGGCATCCTTGCAATGGACAACTACGGTTGGGAGAACACCAACTCTTCGCGGTTCTATGTGACATTCCGCGAGACGCCATGGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCTTTCATTCGTTCTATTATT</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGACGCAATTCTTGTATC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTYCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4946</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>419700</contig_pos>
        <strand>+</strand>
        <context>AAATGGGATG[C/T]GCTCTACACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACTTCATTGCCGTTTGACCCGAACAATGGAAATTTAAGAAAATGGGATG</left_flank>
        <right_flank>GCTCTACACACTGTTGACCACATTGTCGACTGTATTACAATATATGATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGGGATAAGTTTTACGTGTTTGGATGCTTTGTTTCACCCGAAACTTCATTTTTATAATAGTGGTTGTGTGTTTTTCGCACTGTCTTGTCCGTTTGGATTGAGTTTAGAGATAATTCAAGCCATGTTAGGTAAGTTAATACTTAAAGTCATGGTGAAAAAATGGATACTTCGAAAATGATCAGCTTTTTACGCTAGTTTCTATTGCTTAACAATATCCATGTTAACTATTCAATTCATTTACCGTTACTGGGCTTTGTTTTCAATAAGATATCTGAAATACTTCCGTGGTTGGAAATCTGTGGTTTGGGTTGCTTGTTGTCTATTATTTGGTGCCAGTTGGTGGATGTTAGTGTTCTTCTTGCTGAAAATGGATGCGATCGCACGAAACTATTTTAAAGATGAAATAATGCTTCGCTATAACGCAATTATCGATGAGATCCCAGCGAAAACTTCATTGCCGTTTGACCCGAACAATGGAAATTTAAGAAAATGGGATGCGCTCTACACACTGTTGACCACATTGTCGACTGTATTACAATATATGATTATGATCTATTGTGGATGGAAAATGTACACGAAAATGGAAGAAAAAGTGGCGCTATTATCAGATTCATTGAAAAATCACCACCGGCAGTTGTTCAAAACTCTTGTTCTACAGATCAGCTGTCCAACTATTTTTCTTTTCTCCCCAATAATGCTCAGCATATATCTTCCGTATTGTCAAATGAAGATCAGTTTTCCGGCTGATGTTTTTTTCACTGCATACAATATCTATCCAGCTATGGATTCTACAATTGTGTTCCTAACTATTACTGAGTATAGATTTGCTGCAAAACGTTGGTGTTCGAAAACTGATTAATTTAGAGAACATATTTTTACAGGGTTATGGAATAGTTTTCTGCGGAAAATATTTTCGGCGAAAAATAAGCAACATAATTCATCAAGGCCTGCTGATGGACAACTTGCAAATACAGCTTCCACGACAATATAAAAAGAAT</canonical>
            <polymorphic>TTCGGGATAAGTTTTACGTGTTTGGATGCTTTGTTTCACCCGAAACTTCATTTTTATAATAGTGGTTGTGTGTTTTTCGCACTGTCTTGTCCGTTTGGATTGAGTTTAGAGATAATTCAAGCCATGTTAGGTAAGTTAATACTTAAAGTCATGGTGAAAAAATGGATACTTCGAAAATGATCAGCTTTTTACGCTAGTTTCTATTGCTTAACAATATCCATGTTAACTATTCAATTCATTTACCGTTACTGGGCTTTGTTTTCAATAAGATATCTGAAATACTTCCGTGGTTGGAAATCTGTGGTTTGGGTTGCTTGTTGTCTATTATTTGGTGCCAGTTGGTGGATGTTAGTGTTCTTCTTGCTGAAAATGGATGCGATCGCACGAAACTATTTTAAAGATGAAATAATGCTTCGCTATAACGCAATTATCGATGAGATCCCAGCGAAAACTTCATTGCCGTTTGACCCGAACAATGGAAATTTAAGAAAATGGGATGYGCTCTACACACTGTTGACCACATTGTCGACTGTATTACAATATATGATTATGATCTATTGTGGATGGAAAATGTACACGAAAATGGAAGAAAAAGTGGCGCTATTATCAGATTCATTGAAAAATCACCACCGGCAGTTGTTCAAAACTCTTGTTCTACAGATCAGCTGTCCAACTATTTTTCTTTTCTCCCCAATAATGCTCAGCATATATCTTCCGTATTGTCAAATGAAGATCAGTTTTCCGGCTGATGTTTTTTTCACTGCATACAATATCTATCCAGCTATGGATTCTACAATTGTGTTCCTAACTATTACTGAGTATAGATTTGCTGCAAAACGTTGGTGTTCGAAAACTGATTAATTTAGAGAACATATTTTTACAGGGTTATGGAATAGTTTTCTGCGGAAAATATTTTCGGCGAAAAATAAGCAACATAATTCATCAAGGCCTGCTGATGGACAACTTGCAAATACAGCTTCCACGACAATATAAAAAGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 400 99</canonical_bands>
                <polymorphic_bands>600 400</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATAACGCAATTATCGATGAGA</pcr_primer_p1>
		<pcr_primer_p2>GCTGATCTGTAGAACAAGAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATAACGCAATTATCGATGAGATCCCAGCGAAAACTTCATTGCCGTTTGACCCGAACAATGGAAATTTAAGAAAATGGGATGCGCTCTACACACTGTTGACCACATTGTCGACTGTATTACAATATATGATTATGATCTATTGTGGATGGAAAATGTACACGAAAATGGAAGAAAAAGTGGCGCTATTATCAGATTCATTGAAAAATCACCACCGGCAGTTGTTCAAAACTCTTGTTCTACAGATCAGC</canonical_amplicon>
		<polymorphic_amplicon>CTATAACGCAATTATCGATGAGATCCCAGCGAAAACTTCATTGCCGTTTGACCCGAACAATGGAAATTTAAGAAAATGGGATGYGCTCTACACACTGTTGACCACATTGTCGACTGTATTACAATATATGATTATGATCTATTGTGGATGGAAAATGTACACGAAAATGGAAGAAAAAGTGGCGCTATTATCAGATTCATTGAAAAATCACCACCGGCAGTTGTTCAAAACTCTTGTTCTACAGATCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4947</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>419561</contig_pos>
        <strand>+</strand>
        <context>AGTGTTCTTY[C/T]TGMTGAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGCTTGTTGTCTATTATTTGGTGCCAGTTGGTGGATGTTAGTGTTCTTC</left_flank>
        <right_flank>TGCTGAAAATGGATGCGATCGCACGAAACTATTTTAAAGATGAAATAATG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTTCAATCGCACGAACAATAAGTAACCTGGCATTTTTATCAAGCTCTCTTCTCGGTATCATTTTGATATTTCTGACTCTGTTTGGAGTTCGTAAAATCTTTGAAACGTATAAATATCTCATGATTGCCTTCACATTTTTCGGGATAAGTTTTACGTGTTTGGATGCTTTGTTTCACCCGAAACTTCATTTTTATAATAGTGGTTGTGTGTTTTTCGCACTGTCTTGTCCGTTTGGATTGAGTTTAGAGATAATTCAAGCCATGTTAGGTAAGTTAATACTTAAAGTCATGGTGAAAAAATGGATACTTCGAAAATGATCAGCTTTTTACGCTAGTTTCTATTGCTTAACAATATCCATGTTAACTATTCAATTCATTTACCGTTACTGGGCTTTGTTTTCAATAAGATATCTGAAATACTTCCGTGGTTGGAAATCTGTGGTTTGGGTTGCTTGTTGTCTATTATTTGGTGCCAGTTGGTGGATGTTAGTGTTCTTCTTGCTGAAAATGGATGCGATCGCACGAAACTATTTTAAAGATGAAATAATGCTTCGCTATAACGCAATTATCGATGAGATCCCAGCGAAAACTTCATTGCCGTTTGACCCGAACAATGGAAATTTAAGAAAATGGGATGCGCTCTACACACTGTTGACCACATTGTCGACTGTATTACAATATATGATTATGATCTATTGTGGATGGAAAATGTACACGAAAATGGAAGAAAAAGTGGCGCTATTATCAGATTCATTGAAAAATCACCACCGGCAGTTGTTCAAAACTCTTGTTCTACAGATCAGCTGTCCAACTATTTTTCTTTTCTCCCCAATAATGCTCAGCATATATCTTCCGTATTGTCAAATGAAGATCAGTTTTCCGGCTGATGTTTTTTTCACTGCATACAATATCTATCCAGCTATGGATTCTACAATTGTGTTCCTAACTATTACTGAGTATAGATTTGCTGCAAAACGTTGGTGTTCGAAAACTGATTAA</canonical>
            <polymorphic>AACTTCAATCGCACGAACAATAAGTAACCTGGCATTTTTATCAAGCTCTCTTCTCGGTATCATTTTGATATTTCTGACTCTGTTTGGAGTTCGTAAAATCTTTGAAACGTATAAATATCTCATGATTGCCTTCACATTTTTCGGGATAAGTTTTACGTGTTTGGATGCTTTGTTTCACCCGAAACTTCATTTTTATAATAGTGGTTGTGTGTTTTTCGCACTGTCTTGTCCGTTTGGATTGAGTTTAGAGATAATTCAAGCCATGTTAGGTAAGTTAATACTTAAAGTCATGGTGAAAAAATGGATACTTCGAAAATGATCAGCTTTTTACGCTAGTTTCTATTGCTTAACAATATCCATGTTAACTATTCAATTCATTTACCGTTACTGGGCTTTGTTTTCAATAAGATATCTGAAATACTTCCGTGGTTGGAAATCTGTGGTTTGGGTTGCTTGTTGTCTATTATTTGGTGCCAGTTGGTGGATGTTAGTGTTCTTCYTGCTGAAAATGGATGCGATCGCACGAAACTATTTTAAAGATGAAATAATGCTTCGCTATAACGCAATTATCGATGAGATCCCAGCGAAAACTTCATTGCCGTTTGACCCGAACAATGGAAATTTAAGAAAATGGGATGCGCTCTACACACTGTTGACCACATTGTCGACTGTATTACAATATATGATTATGATCTATTGTGGATGGAAAATGTACACGAAAATGGAAGAAAAAGTGGCGCTATTATCAGATTCATTGAAAAATCACCACCGGCAGTTGTTCAAAACTCTTGTTCTACAGATCAGCTGTCCAACTATTTTTCTTTTCTCCCCAATAATGCTCAGCATATATCTTCCGTATTGTCAAATGAAGATCAGTTTTCCGGCTGATGTTTTTTTCACTGCATACAATATCTATCCAGCTATGGATTCTACAATTGTGTTCCTAACTATTACTGAGTATAGATTTGCTGCAAAACGTTGGTGTTCGAAAACTGATTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATCAGCTTTTTACGCTAGT</pcr_primer_p1>
		<pcr_primer_p2>TATAGCGAAGCATTATTTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATGATCAGCTTTTTACGCTAGTTTCTATTGCTTAACAATATCCATGTTAACTATTCAATTCATTTACCGTTACTGGGCTTTGTTTTCAATAAGATATCTGAAATACTTCCGTGGTTGGAAATCTGTGGTTTGGGTTGCTTGTTGTCTATTATTTGGTGCCAGTTGGTGGATGTTAGTGTTCTTCTTGCTGAAAATGGATGCGATCGCACGAAACTATTTTAAAGATGAAATAATGCTTCGCTATA</canonical_amplicon>
		<polymorphic_amplicon>ATGATCAGCTTTTTACGCTAGTTTCTATTGCTTAACAATATCCATGTTAACTATTCAATTCATTTACCGTTACTGGGCTTTGTTTTCAATAAGATATCTGAAATACTTCCGTGGTTGGAAATCTGTGGTTTGGGTTGCTTGTTGTCTATTATTTGGTGCCAGTTGGTGGATGTTAGTGTTCTTCYTGCTGAAAATGGATGCGATCGCACGAAACTATTTTAAAGATGAAATAATGCTTCGCTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4948</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>419560</contig_pos>
        <strand>+</strand>
        <context>TAGTGTTCTT[C/T]YTGMTGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTGCTTGTTGTCTATTATTTGGTGCCAGTTGGTGGATGTTAGTGTTCTT</left_flank>
        <right_flank>TTGCTGAAAATGGATGCGATCGCACGAAACTATTTTAAAGATGAAATAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACTTCAATCGCACGAACAATAAGTAACCTGGCATTTTTATCAAGCTCTCTTCTCGGTATCATTTTGATATTTCTGACTCTGTTTGGAGTTCGTAAAATCTTTGAAACGTATAAATATCTCATGATTGCCTTCACATTTTTCGGGATAAGTTTTACGTGTTTGGATGCTTTGTTTCACCCGAAACTTCATTTTTATAATAGTGGTTGTGTGTTTTTCGCACTGTCTTGTCCGTTTGGATTGAGTTTAGAGATAATTCAAGCCATGTTAGGTAAGTTAATACTTAAAGTCATGGTGAAAAAATGGATACTTCGAAAATGATCAGCTTTTTACGCTAGTTTCTATTGCTTAACAATATCCATGTTAACTATTCAATTCATTTACCGTTACTGGGCTTTGTTTTCAATAAGATATCTGAAATACTTCCGTGGTTGGAAATCTGTGGTTTGGGTTGCTTGTTGTCTATTATTTGGTGCCAGTTGGTGGATGTTAGTGTTCTTCTTGCTGAAAATGGATGCGATCGCACGAAACTATTTTAAAGATGAAATAATGCTTCGCTATAACGCAATTATCGATGAGATCCCAGCGAAAACTTCATTGCCGTTTGACCCGAACAATGGAAATTTAAGAAAATGGGATGCGCTCTACACACTGTTGACCACATTGTCGACTGTATTACAATATATGATTATGATCTATTGTGGATGGAAAATGTACACGAAAATGGAAGAAAAAGTGGCGCTATTATCAGATTCATTGAAAAATCACCACCGGCAGTTGTTCAAAACTCTTGTTCTACAGATCAGCTGTCCAACTATTTTTCTTTTCTCCCCAATAATGCTCAGCATATATCTTCCGTATTGTCAAATGAAGATCAGTTTTCCGGCTGATGTTTTTTTCACTGCATACAATATCTATCCAGCTATGGATTCTACAATTGTGTTCCTAACTATTACTGAGTATAGATTTGCTGCAAAACGTTGGTGTTCGAAAACTGATTA</canonical>
            <polymorphic>TAACTTCAATCGCACGAACAATAAGTAACCTGGCATTTTTATCAAGCTCTCTTCTCGGTATCATTTTGATATTTCTGACTCTGTTTGGAGTTCGTAAAATCTTTGAAACGTATAAATATCTCATGATTGCCTTCACATTTTTCGGGATAAGTTTTACGTGTTTGGATGCTTTGTTTCACCCGAAACTTCATTTTTATAATAGTGGTTGTGTGTTTTTCGCACTGTCTTGTCCGTTTGGATTGAGTTTAGAGATAATTCAAGCCATGTTAGGTAAGTTAATACTTAAAGTCATGGTGAAAAAATGGATACTTCGAAAATGATCAGCTTTTTACGCTAGTTTCTATTGCTTAACAATATCCATGTTAACTATTCAATTCATTTACCGTTACTGGGCTTTGTTTTCAATAAGATATCTGAAATACTTCCGTGGTTGGAAATCTGTGGTTTGGGTTGCTTGTTGTCTATTATTTGGTGCCAGTTGGTGGATGTTAGTGTTCTTYTTGCTGAAAATGGATGCGATCGCACGAAACTATTTTAAAGATGAAATAATGCTTCGCTATAACGCAATTATCGATGAGATCCCAGCGAAAACTTCATTGCCGTTTGACCCGAACAATGGAAATTTAAGAAAATGGGATGCGCTCTACACACTGTTGACCACATTGTCGACTGTATTACAATATATGATTATGATCTATTGTGGATGGAAAATGTACACGAAAATGGAAGAAAAAGTGGCGCTATTATCAGATTCATTGAAAAATCACCACCGGCAGTTGTTCAAAACTCTTGTTCTACAGATCAGCTGTCCAACTATTTTTCTTTTCTCCCCAATAATGCTCAGCATATATCTTCCGTATTGTCAAATGAAGATCAGTTTTCCGGCTGATGTTTTTTTCACTGCATACAATATCTATCCAGCTATGGATTCTACAATTGTGTTCCTAACTATTACTGAGTATAGATTTGCTGCAAAACGTTGGTGTTCGAAAACTGATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATCAGCTTTTTACGCTAGT</pcr_primer_p1>
		<pcr_primer_p2>TATAGCGAAGCATTATTTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATGATCAGCTTTTTACGCTAGTTTCTATTGCTTAACAATATCCATGTTAACTATTCAATTCATTTACCGTTACTGGGCTTTGTTTTCAATAAGATATCTGAAATACTTCCGTGGTTGGAAATCTGTGGTTTGGGTTGCTTGTTGTCTATTATTTGGTGCCAGTTGGTGGATGTTAGTGTTCTTCTTGCTGAAAATGGATGCGATCGCACGAAACTATTTTAAAGATGAAATAATGCTTCGCTATA</canonical_amplicon>
		<polymorphic_amplicon>ATGATCAGCTTTTTACGCTAGTTTCTATTGCTTAACAATATCCATGTTAACTATTCAATTCATTTACCGTTACTGGGCTTTGTTTTCAATAAGATATCTGAAATACTTCCGTGGTTGGAAATCTGTGGTTTGGGTTGCTTGTTGTCTATTATTTGGTGCCAGTTGGTGGATGTTAGTGTTCTTYTTGCTGAAAATGGATGCGATCGCACGAAACTATTTTAAAGATGAAATAATGCTTCGCTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4949</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>419470</contig_pos>
        <strand>+</strand>
        <context>TTTCAATAAG[A/C]TATCTGAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGTTAACTATTCAATTCATTTACCGTTACTGGGCTTTGTTTTCAATAAG</left_flank>
        <right_flank>TATCTGAAATACTTCCGTGGTTGGAAATCTGTGGTTTGGGTTGCTTGTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTCTATATAGTATTTGGCAATCATATTTAAAGCCTCACCAGTCTTCTACTGTTTTTATCACAAAAAATGTCGGATAACTTTCTCTTTCTAACTTCAATCGCACGAACAATAAGTAACCTGGCATTTTTATCAAGCTCTCTTCTCGGTATCATTTTGATATTTCTGACTCTGTTTGGAGTTCGTAAAATCTTTGAAACGTATAAATATCTCATGATTGCCTTCACATTTTTCGGGATAAGTTTTACGTGTTTGGATGCTTTGTTTCACCCGAAACTTCATTTTTATAATAGTGGTTGTGTGTTTTTCGCACTGTCTTGTCCGTTTGGATTGAGTTTAGAGATAATTCAAGCCATGTTAGGTAAGTTAATACTTAAAGTCATGGTGAAAAAATGGATACTTCGAAAATGATCAGCTTTTTACGCTAGTTTCTATTGCTTAACAATATCCATGTTAACTATTCAATTCATTTACCGTTACTGGGCTTTGTTTTCAATAAGATATCTGAAATACTTCCGTGGTTGGAAATCTGTGGTTTGGGTTGCTTGTTGTCTATTATTTGGTGCCAGTTGGTGGATGTTAGTGTTCTTCTTGCTGAAAATGGATGCGATCGCACGAAACTATTTTAAAGATGAAATAATGCTTCGCTATAACGCAATTATCGATGAGATCCCAGCGAAAACTTCATTGCCGTTTGACCCGAACAATGGAAATTTAAGAAAATGGGATGCGCTCTACACACTGTTGACCACATTGTCGACTGTATTACAATATATGATTATGATCTATTGTGGATGGAAAATGTACACGAAAATGGAAGAAAAAGTGGCGCTATTATCAGATTCATTGAAAAATCACCACCGGCAGTTGTTCAAAACTCTTGTTCTACAGATCAGCTGTCCAACTATTTTTCTTTTCTCCCCAATAATGCTCAGCATATATCTTCCGTATTGTCAAATGAAGATCAGTTTTCCGGCTGATGTTTTTTTCACTGCATACAA</canonical>
            <polymorphic>TCTTCTATATAGTATTTGGCAATCATATTTAAAGCCTCACCAGTCTTCTACTGTTTTTATCACAAAAAATGTCGGATAACTTTCTCTTTCTAACTTCAATCGCACGAACAATAAGTAACCTGGCATTTTTATCAAGCTCTCTTCTCGGTATCATTTTGATATTTCTGACTCTGTTTGGAGTTCGTAAAATCTTTGAAACGTATAAATATCTCATGATTGCCTTCACATTTTTCGGGATAAGTTTTACGTGTTTGGATGCTTTGTTTCACCCGAAACTTCATTTTTATAATAGTGGTTGTGTGTTTTTCGCACTGTCTTGTCCGTTTGGATTGAGTTTAGAGATAATTCAAGCCATGTTAGGTAAGTTAATACTTAAAGTCATGGTGAAAAAATGGATACTTCGAAAATGATCAGCTTTTTACGCTAGTTTCTATTGCTTAACAATATCCATGTTAACTATTCAATTCATTTACCGTTACTGGGCTTTGTTTTCAATAAGMTATCTGAAATACTTCCGTGGTTGGAAATCTGTGGTTTGGGTTGCTTGTTGTCTATTATTTGGTGCCAGTTGGTGGATGTTAGTGTTCTTCTTGCTGAAAATGGATGCGATCGCACGAAACTATTTTAAAGATGAAATAATGCTTCGCTATAACGCAATTATCGATGAGATCCCAGCGAAAACTTCATTGCCGTTTGACCCGAACAATGGAAATTTAAGAAAATGGGATGCGCTCTACACACTGTTGACCACATTGTCGACTGTATTACAATATATGATTATGATCTATTGTGGATGGAAAATGTACACGAAAATGGAAGAAAAAGTGGCGCTATTATCAGATTCATTGAAAAATCACCACCGGCAGTTGTTCAAAACTCTTGTTCTACAGATCAGCTGTCCAACTATTTTTCTTTTCTCCCCAATAATGCTCAGCATATATCTTCCGTATTGTCAAATGAAGATCAGTTTTCCGGCTGATGTTTTTTTCACTGCATACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATAATTCAAGCCATGTTAGGTA</pcr_primer_p1>
		<pcr_primer_p2>AGAACACTAACATCCACCAACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATAATTCAAGCCATGTTAGGTAAGTTAATACTTAAAGTCATGGTGAAAAAATGGATACTTCGAAAATGATCAGCTTTTTACGCTAGTTTCTATTGCTTAACAATATCCATGTTAACTATTCAATTCATTTACCGTTACTGGGCTTTGTTTTCAATAAGATATCTGAAATACTTCCGTGGTTGGAAATCTGTGGTTTGGGTTGCTTGTTGTCTATTATTTGGTGCCAGTTGGTGGATGTTAGTGTTCT</canonical_amplicon>
		<polymorphic_amplicon>GATAATTCAAGCCATGTTAGGTAAGTTAATACTTAAAGTCATGGTGAAAAAATGGATACTTCGAAAATGATCAGCTTTTTACGCTAGTTTCTATTGCTTAACAATATCCATGTTAACTATTCAATTCATTTACCGTTACTGGGCTTTGTTTTCAATAAGMTATCTGAAATACTTCCGTGGTTGGAAATCTGTGGTTTGGGTTGCTTGTTGTCTATTATTTGGTGCCAGTTGGTGGATGTTAGTGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4950</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>458176</contig_pos>
        <strand>+</strand>
        <context>GACYTGTTTG[A/G]AAAGGGAMTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATGATCATTTAAAGGAAGCTTTTGTGACACAAGGTACTGACTTGTTTG</left_flank>
        <right_flank>AAAGGGAATTGAGCTTTTTTGAAAGATGAACTTCAATACTTCAGGCGACG</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACACACAGAAAACAAAAACTCCGATTCAAAAATCGCTTGCGACCAACAACCTTTGACCATGTTTTCGAAGACAGTCAGAGACGATAAGGAAGTTCTCTAGTTATTGTGACTAGTGTTACTAGAAAACAGAGAAGCCTATATAAAAGAATGTCTGGTGAAAATTGTTTATACCGATTCAAAAATGAGTGTGTTCATCGTCGCATTTTTCTCATTCATAGCCGCGTACATTGTTCATTTCTACTGGAAGGTTAGCAAATATCCAAAAGGACCACTTCCACTTCCATTTGTCGGGAATTTACTACAGGTTTGTTCATTGGTCTGGGATGTAAAGAAAAATAAAGTTTAGTTCCCCGCAACCCACATACAAACGTTTTATGACGATTTGGCCAAAACCTATGGTCCATGCTTCACACTTTGGACACCAACGCCGTCGGTAGTCATCACGGATTATGATCATTTAAAGGAAGCTTTTGTGACACAAGGTACTGACTTGTTTGGAAAGGGAATTGAGCTTTTTTGAAAGATGAACTTCAATACTTCAGGCGACGCGTTCATCACACGTGGTCTCCGTCCTCCAGAAACACTTCTACACCCAGATGTGGATACTGGAATTGTTTTCTCTAATGCAGATACTTGGAGAGTTCAAAGAAGAACTTCATTGAAAATTCTCCGAGATTTTGGACTTGGCCGAAACTTGATGGAAGAGCAAGTGACACGATCGGTCCATGAAATGCTCCAACAGCTGGATAACATCAAGGATAAAACGGATGTTGATATGTACTGGCCTATTCAGCTTTGTGTCGGAAATGTGATCAATGAGAGCTTGTTCGGCTATCACTATAGTTATAAAGACACGGAAAAATTTCAAAAGTTTGTGATGATTGTGGATAGACACTTGAAAAATCTTTCTGGTCGTCCACAACTTTTGATCGCTGCCTGGCCGTGGTTAAGACATGTCCCAATCATTGGAGAAATGGGTTATCATAGCATCAAAAGAA</canonical>
            <polymorphic>AAACACACAGAAAACAAAAACTCCGATTCAAAAATCGCTTGCGACCAACAACCTTTGACCATGTTTTCGAAGACAGTCAGAGACGATAAGGAAGTTCTCTAGTTATTGTGACTAGTGTTACTAGAAAACAGAGAAGCCTATATAAAAGAATGTCTGGTGAAAATTGTTTATACCGATTCAAAAATGAGTGTGTTCATCGTCGCATTTTTCTCATTCATAGCCGCGTACATTGTTCATTTCTACTGGAAGGTTAGCAAATATCCAAAAGGACCACTTCCACTTCCATTTGTCGGGAATTTACTACAGGTTTGTTCATTGGTCTGGGATGTAAAGAAAAATAAAGTTTAGTTCCCCGCAACCCACATACAAACGTTTTATGACGATTTGGCCAAAACCTATGGTCCATGCTTCACACTTTGGACACCAACGCCGTCGGTAGTCATCACGGATTATGATCATTTAAAGGAAGCTTTTGTGACACAAGGTACTGACTTGTTTGRAAAGGGAATTGAGCTTTTTTGAAAGATGAACTTCAATACTTCAGGCGACGCGTTCATCACACGTGGTCTCCGTCCTCCAGAAACACTTCTACACCCAGATGTGGATACTGGAATTGTTTTCTCTAATGCAGATACTTGGAGAGTTCAAAGAAGAACTTCATTGAAAATTCTCCGAGATTTTGGACTTGGCCGAAACTTGATGGAAGAGCAAGTGACACGATCGGTCCATGAAATGCTCCAACAGCTGGATAACATCAAGGATAAAACGGATGTTGATATGTACTGGCCTATTCAGCTTTGTGTCGGAAATGTGATCAATGAGAGCTTGTTCGGCTATCACTATAGTTATAAAGACACGGAAAAATTTCAAAAGTTTGTGATGATTGTGGATAGACACTTGAAAAATCTTTCTGGTCGTCCACAACTTTTGATCGCTGCCTGGCCGTGGTTAAGACATGTCCCAATCATTGGAGAAATGGGTTATCATAGCATCAAAAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGCTTCACACTTTGGACAC</pcr_primer_p1>
		<pcr_primer_p2>TCTTTGAACTCTCCAAGTATCTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATGCTTCACACTTTGGACACCAACGCCGTCGGTAGTCATCACGGATTATGATCATTTAAAGGAAGCTTTTGTGACACAAGGTACTGACTTGTTTGGAAAGGGAATTGAGCTTTTTTGAAAGATGAACTTCAATACTTCAGGCGACGCGTTCATCACACGTGGTCTCCGTCCTCCAGAAACACTTCTACACCCAGATGTGGATACTGGAATTGTTTTCTCTAATGCAGATACTTGGAGAGTTCAAAGA</canonical_amplicon>
		<polymorphic_amplicon>ATGCTTCACACTTTGGACACCAACGCCGTCGGTAGTCATCACGGATTATGATCATTTAAAGGAAGCTTTTGTGACACAAGGTACTGACTTGTTTGRAAAGGGAATTGAGCTTTTTTGAAAGATGAACTTCAATACTTCAGGCGACGCGTTCATCACACGTGGTCTCCGTCCTCCAGAAACACTTCTACACCCAGATGTGGATACTGGAATTGTTTTCTCTAATGCAGATACTTGGAGAGTTCAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4951</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>458184</contig_pos>
        <strand>+</strand>
        <context>TGRAAAGGGA[A/C]TTGAGCTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTAAAGGAAGCTTTTGTGACACAAGGTACTGACTTGTTTGGAAAGGGA</left_flank>
        <right_flank>TTGAGCTTTTTTGAAAGATGAACTTCAATACTTCAGGCGACGCGTTCATC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAAACAAAAACTCCGATTCAAAAATCGCTTGCGACCAACAACCTTTGACCATGTTTTCGAAGACAGTCAGAGACGATAAGGAAGTTCTCTAGTTATTGTGACTAGTGTTACTAGAAAACAGAGAAGCCTATATAAAAGAATGTCTGGTGAAAATTGTTTATACCGATTCAAAAATGAGTGTGTTCATCGTCGCATTTTTCTCATTCATAGCCGCGTACATTGTTCATTTCTACTGGAAGGTTAGCAAATATCCAAAAGGACCACTTCCACTTCCATTTGTCGGGAATTTACTACAGGTTTGTTCATTGGTCTGGGATGTAAAGAAAAATAAAGTTTAGTTCCCCGCAACCCACATACAAACGTTTTATGACGATTTGGCCAAAACCTATGGTCCATGCTTCACACTTTGGACACCAACGCCGTCGGTAGTCATCACGGATTATGATCATTTAAAGGAAGCTTTTGTGACACAAGGTACTGACTTGTTTGGAAAGGGAATTGAGCTTTTTTGAAAGATGAACTTCAATACTTCAGGCGACGCGTTCATCACACGTGGTCTCCGTCCTCCAGAAACACTTCTACACCCAGATGTGGATACTGGAATTGTTTTCTCTAATGCAGATACTTGGAGAGTTCAAAGAAGAACTTCATTGAAAATTCTCCGAGATTTTGGACTTGGCCGAAACTTGATGGAAGAGCAAGTGACACGATCGGTCCATGAAATGCTCCAACAGCTGGATAACATCAAGGATAAAACGGATGTTGATATGTACTGGCCTATTCAGCTTTGTGTCGGAAATGTGATCAATGAGAGCTTGTTCGGCTATCACTATAGTTATAAAGACACGGAAAAATTTCAAAAGTTTGTGATGATTGTGGATAGACACTTGAAAAATCTTTCTGGTCGTCCACAACTTTTGATCGCTGCCTGGCCGTGGTTAAGACATGTCCCAATCATTGGAGAAATGGGTTATCATAGCATCAAAAGAAATATTAAA</canonical>
            <polymorphic>AGAAAACAAAAACTCCGATTCAAAAATCGCTTGCGACCAACAACCTTTGACCATGTTTTCGAAGACAGTCAGAGACGATAAGGAAGTTCTCTAGTTATTGTGACTAGTGTTACTAGAAAACAGAGAAGCCTATATAAAAGAATGTCTGGTGAAAATTGTTTATACCGATTCAAAAATGAGTGTGTTCATCGTCGCATTTTTCTCATTCATAGCCGCGTACATTGTTCATTTCTACTGGAAGGTTAGCAAATATCCAAAAGGACCACTTCCACTTCCATTTGTCGGGAATTTACTACAGGTTTGTTCATTGGTCTGGGATGTAAAGAAAAATAAAGTTTAGTTCCCCGCAACCCACATACAAACGTTTTATGACGATTTGGCCAAAACCTATGGTCCATGCTTCACACTTTGGACACCAACGCCGTCGGTAGTCATCACGGATTATGATCATTTAAAGGAAGCTTTTGTGACACAAGGTACTGACTTGTTTGGAAAGGGAMTTGAGCTTTTTTGAAAGATGAACTTCAATACTTCAGGCGACGCGTTCATCACACGTGGTCTCCGTCCTCCAGAAACACTTCTACACCCAGATGTGGATACTGGAATTGTTTTCTCTAATGCAGATACTTGGAGAGTTCAAAGAAGAACTTCATTGAAAATTCTCCGAGATTTTGGACTTGGCCGAAACTTGATGGAAGAGCAAGTGACACGATCGGTCCATGAAATGCTCCAACAGCTGGATAACATCAAGGATAAAACGGATGTTGATATGTACTGGCCTATTCAGCTTTGTGTCGGAAATGTGATCAATGAGAGCTTGTTCGGCTATCACTATAGTTATAAAGACACGGAAAAATTTCAAAAGTTTGTGATGATTGTGGATAGACACTTGAAAAATCTTTCTGGTCGTCCACAACTTTTGATCGCTGCCTGGCCGTGGTTAAGACATGTCCCAATCATTGGAGAAATGGGTTATCATAGCATCAAAAGAAATATTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>212 197 153 146 133 105 54</canonical_bands>
                <polymorphic_bands>317 197 153 146 133 54</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGCTTCACACTTTGGACAC</pcr_primer_p1>
		<pcr_primer_p2>TCTTTGAACTCTCCAAGTATCTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATGCTTCACACTTTGGACACCAACGCCGTCGGTAGTCATCACGGATTATGATCATTTAAAGGAAGCTTTTGTGACACAAGGTACTGACTTGTTTGGAAAGGGAATTGAGCTTTTTTGAAAGATGAACTTCAATACTTCAGGCGACGCGTTCATCACACGTGGTCTCCGTCCTCCAGAAACACTTCTACACCCAGATGTGGATACTGGAATTGTTTTCTCTAATGCAGATACTTGGAGAGTTCAAAGA</canonical_amplicon>
		<polymorphic_amplicon>ATGCTTCACACTTTGGACACCAACGCCGTCGGTAGTCATCACGGATTATGATCATTTAAAGGAAGCTTTTGTGACACAAGGTACTGACTTGTTTGGAAAGGGAMTTGAGCTTTTTTGAAAGATGAACTTCAATACTTCAGGCGACGCGTTCATCACACGTGGTCTCCGTCCTCCAGAAACACTTCTACACCCAGATGTGGATACTGGAATTGTTTTCTCTAATGCAGATACTTGGAGAGTTCAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4952</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>458280</contig_pos>
        <strand>+</strand>
        <context>CCCAGATGTG[A/G]ATACTGGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATCACACGTGGTCTCCGTCCTCCAGAAACACTTCTACACCCAGATGTG</left_flank>
        <right_flank>ATACTGGAATTGTTTTCTCTAATGCAGATACTTGGAGAGTTCAAAGAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGTGACTAGTGTTACTAGAAAACAGAGAAGCCTATATAAAAGAATGTCTGGTGAAAATTGTTTATACCGATTCAAAAATGAGTGTGTTCATCGTCGCATTTTTCTCATTCATAGCCGCGTACATTGTTCATTTCTACTGGAAGGTTAGCAAATATCCAAAAGGACCACTTCCACTTCCATTTGTCGGGAATTTACTACAGGTTTGTTCATTGGTCTGGGATGTAAAGAAAAATAAAGTTTAGTTCCCCGCAACCCACATACAAACGTTTTATGACGATTTGGCCAAAACCTATGGTCCATGCTTCACACTTTGGACACCAACGCCGTCGGTAGTCATCACGGATTATGATCATTTAAAGGAAGCTTTTGTGACACAAGGTACTGACTTGTTTGGAAAGGGAATTGAGCTTTTTTGAAAGATGAACTTCAATACTTCAGGCGACGCGTTCATCACACGTGGTCTCCGTCCTCCAGAAACACTTCTACACCCAGATGTGGATACTGGAATTGTTTTCTCTAATGCAGATACTTGGAGAGTTCAAAGAAGAACTTCATTGAAAATTCTCCGAGATTTTGGACTTGGCCGAAACTTGATGGAAGAGCAAGTGACACGATCGGTCCATGAAATGCTCCAACAGCTGGATAACATCAAGGATAAAACGGATGTTGATATGTACTGGCCTATTCAGCTTTGTGTCGGAAATGTGATCAATGAGAGCTTGTTCGGCTATCACTATAGTTATAAAGACACGGAAAAATTTCAAAAGTTTGTGATGATTGTGGATAGACACTTGAAAAATCTTTCTGGTCGTCCACAACTTTTGATCGCTGCCTGGCCGTGGTTAAGACATGTCCCAATCATTGGAGAAATGGGTTATCATAGCATCAAAAGAAATATTAAAACGTAAGTTTTTAAAAAACCTGGAATATATCAGATGGGATCTTTTCAGTACCACAAGTTCATCGAGGATGAGGTAGCCAGTCAGATAAAGGAGTAT</canonical>
            <polymorphic>ATTGTGACTAGTGTTACTAGAAAACAGAGAAGCCTATATAAAAGAATGTCTGGTGAAAATTGTTTATACCGATTCAAAAATGAGTGTGTTCATCGTCGCATTTTTCTCATTCATAGCCGCGTACATTGTTCATTTCTACTGGAAGGTTAGCAAATATCCAAAAGGACCACTTCCACTTCCATTTGTCGGGAATTTACTACAGGTTTGTTCATTGGTCTGGGATGTAAAGAAAAATAAAGTTTAGTTCCCCGCAACCCACATACAAACGTTTTATGACGATTTGGCCAAAACCTATGGTCCATGCTTCACACTTTGGACACCAACGCCGTCGGTAGTCATCACGGATTATGATCATTTAAAGGAAGCTTTTGTGACACAAGGTACTGACTTGTTTGGAAAGGGAATTGAGCTTTTTTGAAAGATGAACTTCAATACTTCAGGCGACGCGTTCATCACACGTGGTCTCCGTCCTCCAGAAACACTTCTACACCCAGATGTGRATACTGGAATTGTTTTCTCTAATGCAGATACTTGGAGAGTTCAAAGAAGAACTTCATTGAAAATTCTCCGAGATTTTGGACTTGGCCGAAACTTGATGGAAGAGCAAGTGACACGATCGGTCCATGAAATGCTCCAACAGCTGGATAACATCAAGGATAAAACGGATGTTGATATGTACTGGCCTATTCAGCTTTGTGTCGGAAATGTGATCAATGAGAGCTTGTTCGGCTATCACTATAGTTATAAAGACACGGAAAAATTTCAAAAGTTTGTGATGATTGTGGATAGACACTTGAAAAATCTTTCTGGTCGTCCACAACTTTTGATCGCTGCCTGGCCGTGGTTAAGACATGTCCCAATCATTGGAGAAATGGGTTATCATAGCATCAAAAGAAATATTAAAACGTAAGTTTTTAAAAAACCTGGAATATATCAGATGGGATCTTTTCAGTACCACAAGTTCATCGAGGATGAGGTAGCCAGTCAGATAAAGGAGTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>311 200 185 144 137 23</canonical_bands>
                <polymorphic_bands>455 200 185 137 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGTAGTCATCACGGATTAT</pcr_primer_p1>
		<pcr_primer_p2>AATCTCGGAGAATTTTCAATG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CGGTAGTCATCACGGATTATGATCATTTAAAGGAAGCTTTTGTGACACAAGGTACTGACTTGTTTGGAAAGGGAATTGAGCTTTTTTGAAAGATGAACTTCAATACTTCAGGCGACGCGTTCATCACACGTGGTCTCCGTCCTCCAGAAACACTTCTACACCCAGATGTGGATACTGGAATTGTTTTCTCTAATGCAGATACTTGGAGAGTTCAAAGAAGAACTTCATTGAAAATTCTCCGAGATT</canonical_amplicon>
		<polymorphic_amplicon>CGGTAGTCATCACGGATTATGATCATTTAAAGGAAGCTTTTGTGACACAAGGTACTGACTTGTTTGGAAAGGGAATTGAGCTTTTTTGAAAGATGAACTTCAATACTTCAGGCGACGCGTTCATCACACGTGGTCTCCGTCCTCCAGAAACACTTCTACACCCAGATGTGRATACTGGAATTGTTTTCTCTAATGCAGATACTTGGAGAGTTCAAAGAAGAACTTCATTGAAAATTCTCCGAGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4953</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>462356</contig_pos>
        <strand>+</strand>
        <context>GTATTGCGTT[A/G]GTCAGCCGCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAAAAAAAGAAAAAAAGTTGTGGGTTTAAATCCAGATTGTATTGCGTT</left_flank>
        <right_flank>GTCAGCCGCGGGCGTCGACCATGAGCCGGTAGCGGAGAGACACTTGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACTCAACTGTTATTCAGTTGGATTGGACACGCTCACGATTGCATCACCGAAGACATAGGGAGCATCTGAACCATGAATTGTTGCTTTGAATGACAGTGTTGCAGATTGAGGGTCTATTTCTCTTTCAGTGTTGAAGTAATCAAAAGATGCCATTCTTTAAGAATTGGATATTCAGGCAGTGCTAGAAAAAATCATCCCATTCACTATCGGAAAGAGAAACTGTTTTGGAGAAGGATTGGCTCGAATGGAACTCTTCCTGATTTTCAGTGCATTGATCCAGAAGTACGAATTTTGTGCCAAAATCGAGCATTGACTTGTCACCAGTCTGGGGAGCAGCACTTACTTCAAAACAAACTTTATCAATGTCAACTGATTTCTCAAACTGCTTGAGTTCTCAAAGTGAACATTTCTTGATTTGTATATTATGGGTTATATTAATGAATTTCTGAAAAAAAAAGAAAAAAAGTTGTGGGTTTAAATCCAGATTGTATTGCGTTGGTCAGCCGCGGGCGTCGACCATGAGCCGGTAGCGGAGAGACACTTGAAAAGAAGGTGCTTTTCGTCTTGCGGTTCATTTCCTGTACGGAAGCTGTCTACTAGTGGTTCTTCATAATATTGAGAAAAAAGTGTTATCCTTTTCTCACGGAATTGGTCTCATACAGTTGATTAACCAGTTAATATTCTTACATTTTTAGTTTGCATTTCAAGATGAATATTGATGAACCGTATATTCACTACTCCAGATATGCTCAGAATATTGCACTTGCCGGTTTTTTCCTAACAACTTTCTTATGTTCCCTTCTCGTTTATCTGACAATATTTGAAATAACTCGTAACTTTGGAAGTTATAAAAACCTACTGGTAACATTTGCGAGTTTTGGAATATTTTTTGCTTCAACGGAGGTTGTTCTAAAATTGGTAATTTGGGTGGTAATATGATCATCATGAAGGTAATAAGCTCAGAATGTCTACTCTCACAATGCTGGCTGGATTTTTTA</canonical>
            <polymorphic>TCACTCAACTGTTATTCAGTTGGATTGGACACGCTCACGATTGCATCACCGAAGACATAGGGAGCATCTGAACCATGAATTGTTGCTTTGAATGACAGTGTTGCAGATTGAGGGTCTATTTCTCTTTCAGTGTTGAAGTAATCAAAAGATGCCATTCTTTAAGAATTGGATATTCAGGCAGTGCTAGAAAAAATCATCCCATTCACTATCGGAAAGAGAAACTGTTTTGGAGAAGGATTGGCTCGAATGGAACTCTTCCTGATTTTCAGTGCATTGATCCAGAAGTACGAATTTTGTGCCAAAATCGAGCATTGACTTGTCACCAGTCTGGGGAGCAGCACTTACTTCAAAACAAACTTTATCAATGTCAACTGATTTCTCAAACTGCTTGAGTTCTCAAAGTGAACATTTCTTGATTTGTATATTATGGGTTATATTAATGAATTTCTGAAAAAAAAAGAAAAAAAGTTGTGGGTTTAAATCCAGATTGTATTGCGTTRGTCAGCCGCGGGCGTCGACCATGAGCCGGTAGCGGAGAGACACTTGAAAAGAAGGTGCTTTTCGTCTTGCGGTTCATTTCCTGTACGGAAGCTGTCTACTAGTGGTTCTTCATAATATTGAGAAAAAAGTGTTATCCTTTTCTCACGGAATTGGTCTCATACAGTTGATTAACCAGTTAATATTCTTACATTTTTAGTTTGCATTTCAAGATGAATATTGATGAACCGTATATTCACTACTCCAGATATGCTCAGAATATTGCACTTGCCGGTTTTTTCCTAACAACTTTCTTATGTTCCCTTCTCGTTTATCTGACAATATTTGAAATAACTCGTAACTTTGGAAGTTATAAAAACCTACTGGTAACATTTGCGAGTTTTGGAATATTTTTTGCTTCAACGGAGGTTGTTCTAAAATTGGTAATTTGGGTGGTAATATGATCATCATGAAGGTAATAAGCTCAGAATGTCTACTCTCACAATGCTGGCTGGATTTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTCAACTGATTTCTCAAACT</pcr_primer_p1>
		<pcr_primer_p2>ATGAAGAACCACTAGTAGACAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATGTCAACTGATTTCTCAAACTGCTTGAGTTCTCAAAGTGAACATTTCTTGATTTGTATATTATGGGTTATATTAATGAATTTCTGAAAAAAAAAGAAAAAAAGTTGTGGGTTTAAATCCAGATTGTATTGCGTTGGTCAGCCGCGGGCGTCGACCATGAGCCGGTAGCGGAGAGACACTTGAAAAGAAGGTGCTTTTCGTCTTGCGGTTCATTTCCTGTACGGAAGCTGTCTACTAGTGGTTCTTCAT</canonical_amplicon>
		<polymorphic_amplicon>AATGTCAACTGATTTCTCAAACTGCTTGAGTTCTCAAAGTGAACATTTCTTGATTTGTATATTATGGGTTATATTAATGAATTTCTGAAAAAAAAAGAAAAAAAGTTGTGGGTTTAAATCCAGATTGTATTGCGTTRGTCAGCCGCGGGCGTCGACCATGAGCCGGTAGCGGAGAGACACTTGAAAAGAAGGTGCTTTTCGTCTTGCGGTTCATTTCCTGTACGGAAGCTGTCTACTAGTGGTTCTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4955</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>462681</contig_pos>
        <strand></strand>
        <context>GACAATATTT[G/A]AAATAACTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTCCTAACAACTTTCTTATGTTCCCTTCTCGTTTATCTGACAATATTT</left_flank>
        <right_flank>AAATAACTCGTAACTTTGGAAGTTATAAAAACCTACTGGTAACATTTGCG</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTGGGGAGCAGCACTTACTTCAAAACAAACTTTATCAATGTCAACTGATTTCTCAAACTGCTTGAGTTCTCAAAGTGAACATTTCTTGATTTGTATATTATGGGTTATATTAATGAATTTCTGAAAAAAAAAGAAAAAAAGTTGTGGGTTTAAATCCAGATTGTATTGCGTTGGTCAGCCGCGGGCGTCGACCATGAGCCGGTAGCGGAGAGACACTTGAAAAGAAGGTGCTTTTCGTCTTGCGGTTCATTTCCTGTACGGAAGCTGTCTACTAGTGGTTCTTCATAATATTGAGAAAAAAGTGTTATCCTTTTCTCACGGAATTGGTCTCATACAGTTGATTAACCAGTTAATATTCTTACATTTTTAGTTTGCATTTCAAGATGAATATTGATGAACCGTATATTCACTACTCCAGATATGCTCAGAATATTGCACTTGCCGGTTTTTTCCTAACAACTTTCTTATGTTCCCTTCTCGTTTATCTGACAATATTTGAAATAACTCGTAACTTTGGAAGTTATAAAAACCTACTGGTAACATTTGCGAGTTTTGGAATATTTTTTGCTTCAACGGAGGTTGTTCTAAAATTGGTAATTTGGGTGGTAATATGATCATCATGAAGGTAATAAGCTCAGAATGTCTACTCTCACAATGCTGGCTGGATTTTTTATGCCATCAGTCGCCCATTCGACCTGAGTACGTCTTTTATGAATTGGTTGTTACCTTTATATACGGGGAGCTATTCCCTAACAACATCCATGTTGTCTGTACAGTTTGTGTACCGGTATTGTGCACTTTTTCAGTAAGTTGCCGCAAACATTCTAATAGAACGGCACCCAAAGCGTCCACTTTGAGCTTACACTTCTCATTTCCTGTAAGGTATTGCAAAACGTGATAAACTGACAATATGATTATTATAATGTCAAAAACATTTGGTCGGTTGAACAATAACTGATACCTATAACAAAAAATTAGATATATGAGCTCAAAGTTGA</canonical>
            <polymorphic>GTCTGGGGAGCAGCACTTACTTCAAAACAAACTTTATCAATGTCAACTGATTTCTCAAACTGCTTGAGTTCTCAAAGTGAACATTTCTTGATTTGTATATTATGGGTTATATTAATGAATTTCTGAAAAAAAAAGAAAAAAAGTTGTGGGTTTAAATCCAGATTGTATTGCGTTGGTCAGCCGCGGGCGTCGACCATGAGCCGGTAGCGGAGAGACACTTGAAAAGAAGGTGCTTTTCGTCTTGCGGTTCATTTCCTGTACGGAAGCTGTCTACTAGTGGTTCTTCATAATATTGAGAAAAAAGTGTTATCCTTTTCTCACGGAATTGGTCTCATACAGTTGATTAACCAGTTAATATTCTTACATTTTTAGTTTGCATTTCAAGATGAATATTGATGAACCGTATATTCACTACTCCAGATATGCTCAGAATATTGCACTTGCCGGTTTTTTCCTAACAACTTTCTTATGTTCCCTTCTCGTTTATCTGACAATATTTRAAATAACTCGTAACTTTGGAAGTTATAAAAACCTACTGGTAACATTTGCGAGTTTTGGAATATTTTTTGCTTCAACGGAGGTTGTTCTAAAATTGGTAATTTGGGTGGTAATATGATCATCATGAAGGTAATAAGCTCAGAATGTCTACTCTCACAATGCTGGCTGGATTTTTTATGCCATCAGTCGCCCATTCGACCTGAGTACGTCTTTTATGAATTGGTTGTTACCTTTATATACGGGGAGCTATTCCCTAACAACATCCATGTTGTCTGTACAGTTTGTGTACCGGTATTGTGCACTTTTTCAGTAAGTTGCCGCAAACATTCTAATAGAACGGCACCCAAAGCGTCCACTTTGAGCTTACACTTCTCATTTCCTGTAAGGTATTGCAAAACGTGATAAACTGACAATATGATTATTATAATGTCAAAAACATTTGGTCGGTTGAACAATAACTGATACCTATAACAAAAAATTAGATATATGAGCTCAAAGTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGTTTGCATTTCAAGATGAAT</pcr_primer_p1>
		<pcr_primer_p2>TCATATTACCACCCAAATTACC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTAGTTTGCATTTCAAGATGAATATTGATGAACCGTATATTCACTACTCCAGATATGCTCAGAATATTGCACTTGCCGGTTTTTTCCTAACAACTTTCTTATGTTCCCTTCTCGTTTATCTGACAATATTTGAAATAACTCGTAACTTTGGAAGTTATAAAAACCTACTGGTAACATTTGCGAGTTTTGGAATATTTTTTGCTTCAACGGAGGTTGTTCTAAAATTGGTAATTTGGGTGGTAATATGA</canonical_amplicon>
		<polymorphic_amplicon>TTAGTTTGCATTTCAAGATGAATATTGATGAACCGTATATTCACTACTCCAGATATGCTCAGAATATTGCACTTGCCGGTTTTTTCCTAACAACTTTCTTATGTTCCCTTCTCGTTTATCTGACAATATTTRAAATAACTCGTAACTTTGGAAGTTATAAAAACCTACTGGTAACATTTGCGAGTTTTGGAATATTTTTTGCTTCAACGGAGGTTGTTCTAAAATTGGTAATTTGGGTGGTAATATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4956</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>567807</contig_pos>
        <strand>+</strand>
        <context>TGATTTTTTG[G/T]TCAGCACCTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGTTTCCTGGTTCAATTTACATAAACTGTCCGTATTTTGTGATTTTTTG</left_flank>
        <right_flank>TCAGCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTGTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATGTAGATCAGGGTCTGGAATTATAGGTTTTTAGGAGTTGAACCTAGGGGGGGAGCATGAAGAAAGAAGGCTCTTGAGGAGTTGAACCTGTGGGAAAATATTGGACGTTCTGCGCTGCTACCGGCTGAGCTACGATGGCTAGTCAACCGATGGCTTCTATTAGAAGGGTACTGTAGCCACAGGAGAAAAGGGAATGTGTGAAAATACATAACTTTTTCTCTGTACAGTCTATTTCTGGTGGGAAAAAGACAACTTCAGAAGAATGTTCAAATTTCAAAATTCCATACTGACTTTTTTTTCCAAATTTAAGATTTTTTAACCTACCTTAACCTTGTATTTTGTCAATTATTGTTTTCATGCGATGTCTTCCTTTGCTCATTATCTGATTTTCATTCATTTTCCAGAGTTCATTTTTAGCCTACAAAACTCAAAAGATTTTGTTTTTTTTTGTTTCCTGGTTCAATTTACATAAACTGTCCGTATTTTGTGATTTTTTGGTCAGCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTGTTTTTTGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCGATGGGACGTAAAAGGGTGGATAGGACCGCGGTTGAAGGTATGGGACCACGGTTATCATGTGGCAACCACTCTCATGATTGATGGAATCTTTTTGGAACCCCTCTTCCTAGATAGACCCATAGTTTCTTTACCTAAAAATAAGAATGCAAGTTAAACATTTTTATTATAAACAAAAAAATGCACAACAAT</canonical>
            <polymorphic>TGATGTAGATCAGGGTCTGGAATTATAGGTTTTTAGGAGTTGAACCTAGGGGGGGAGCATGAAGAAAGAAGGCTCTTGAGGAGTTGAACCTGTGGGAAAATATTGGACGTTCTGCGCTGCTACCGGCTGAGCTACGATGGCTAGTCAACCGATGGCTTCTATTAGAAGGGTACTGTAGCCACAGGAGAAAAGGGAATGTGTGAAAATACATAACTTTTTCTCTGTACAGTCTATTTCTGGTGGGAAAAAGACAACTTCAGAAGAATGTTCAAATTTCAAAATTCCATACTGACTTTTTTTTCCAAATTTAAGATTTTTTAACCTACCTTAACCTTGTATTTTGTCAATTATTGTTTTCATGCGATGTCTTCCTTTGCTCATTATCTGATTTTCATTCATTTTCCAGAGTTCATTTTTAGCCTACAAAACTCAAAAGATTTTGTTTTTTTTTGTTTCCTGGTTCAATTTACATAAACTGTCCGTATTTTGTGATTTTTTGKTCAGCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTGTTTTTTGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCGATGGGACGTAAAAGGGTGGATAGGACCGCGGTTGAAGGTATGGGACCACGGTTATCATGTGGCAACCACTCTCATGATTGATGGAATCTTTTTGGAACCCCTCTTCCTAGATAGACCCATAGTTTCTTTACCTAAAAATAAGAATGCAAGTTAAACATTTTTATTATAAACAAAAAAATGCACAACAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTATTGTTTTCATGCGATGT</pcr_primer_p1>
		<pcr_primer_p2>ACGACCATAAGTTATTTGCTCTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATTATTGTTTTCATGCGATGTCTTCCTTTGCTCATTATCTGATTTTCATTCATTTTCCAGAGTTCATTTTTAGCCTACAAAACTCAAAAGATTTTGTTTTTTTTTGTTTCCTGGTTCAATTTACATAAACTGTCCGTATTTTGTGATTTTTTGGTCAGCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTGTTTTTTGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGT</canonical_amplicon>
		<polymorphic_amplicon>AATTATTGTTTTCATGCGATGTCTTCCTTTGCTCATTATCTGATTTTCATTCATTTTCCAGAGTTCATTTTTAGCCTACAAAACTCAAAAGATTTTGTTTTTTTTTGTTTCCTGGTTCAATTTACATAAACTGTCCGTATTTTGTGATTTTTTGKTCAGCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTGTTTTTTGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4957</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>567856</contig_pos>
        <strand>+</strand>
        <context>ATATGACTTG[A/T]TTTTYGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTCAGCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTG</left_flank>
        <right_flank>TTTTTGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGTTTTAGGTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGGGGAGCATGAAGAAAGAAGGCTCTTGAGGAGTTGAACCTGTGGGAAAATATTGGACGTTCTGCGCTGCTACCGGCTGAGCTACGATGGCTAGTCAACCGATGGCTTCTATTAGAAGGGTACTGTAGCCACAGGAGAAAAGGGAATGTGTGAAAATACATAACTTTTTCTCTGTACAGTCTATTTCTGGTGGGAAAAAGACAACTTCAGAAGAATGTTCAAATTTCAAAATTCCATACTGACTTTTTTTTCCAAATTTAAGATTTTTTAACCTACCTTAACCTTGTATTTTGTCAATTATTGTTTTCATGCGATGTCTTCCTTTGCTCATTATCTGATTTTCATTCATTTTCCAGAGTTCATTTTTAGCCTACAAAACTCAAAAGATTTTGTTTTTTTTTGTTTCCTGGTTCAATTTACATAAACTGTCCGTATTTTGTGATTTTTTGGTCAGCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTGTTTTTTGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCGATGGGACGTAAAAGGGTGGATAGGACCGCGGTTGAAGGTATGGGACCACGGTTATCATGTGGCAACCACTCTCATGATTGATGGAATCTTTTTGGAACCCCTCTTCCTAGATAGACCCATAGTTTCTTTACCTAAAAATAAGAATGCAAGTTAAACATTTTTATTATAAACAAAAAAATGCACAACAATTAAAATATTCTAGAAAATGATTAGAATGTTAGGCTTGTTGCATAGCTTC</canonical>
            <polymorphic>GGGGGGAGCATGAAGAAAGAAGGCTCTTGAGGAGTTGAACCTGTGGGAAAATATTGGACGTTCTGCGCTGCTACCGGCTGAGCTACGATGGCTAGTCAACCGATGGCTTCTATTAGAAGGGTACTGTAGCCACAGGAGAAAAGGGAATGTGTGAAAATACATAACTTTTTCTCTGTACAGTCTATTTCTGGTGGGAAAAAGACAACTTCAGAAGAATGTTCAAATTTCAAAATTCCATACTGACTTTTTTTTCCAAATTTAAGATTTTTTAACCTACCTTAACCTTGTATTTTGTCAATTATTGTTTTCATGCGATGTCTTCCTTTGCTCATTATCTGATTTTCATTCATTTTCCAGAGTTCATTTTTAGCCTACAAAACTCAAAAGATTTTGTTTTTTTTTGTTTCCTGGTTCAATTTACATAAACTGTCCGTATTTTGTGATTTTTTGGTCAGCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTGWTTTTTGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCGATGGGACGTAAAAGGGTGGATAGGACCGCGGTTGAAGGTATGGGACCACGGTTATCATGTGGCAACCACTCTCATGATTGATGGAATCTTTTTGGAACCCCTCTTCCTAGATAGACCCATAGTTTCTTTACCTAAAAATAAGAATGCAAGTTAAACATTTTTATTATAAACAAAAAAATGCACAACAATTAAAATATTCTAGAAAATGATTAGAATGTTAGGCTTGTTGCATAGCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTTTCCTGGTTCAATTTAC</pcr_primer_p1>
		<pcr_primer_p2>TACCGTGATAGGAAGGATAAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTGTTTCCTGGTTCAATTTACATAAACTGTCCGTATTTTGTGATTTTTTGGTCAGCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTGTTTTTTGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTA</canonical_amplicon>
		<polymorphic_amplicon>TTTGTTTCCTGGTTCAATTTACATAAACTGTCCGTATTTTGTGATTTTTTGGTCAGCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTGWTTTTTGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4958</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>567861</contig_pos>
        <strand>+</strand>
        <context>ACTTGWTTTT[C/T]GAAAATCTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTGTTTTT</left_flank>
        <right_flank>GAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCATGAAGAAAGAAGGCTCTTGAGGAGTTGAACCTGTGGGAAAATATTGGACGTTCTGCGCTGCTACCGGCTGAGCTACGATGGCTAGTCAACCGATGGCTTCTATTAGAAGGGTACTGTAGCCACAGGAGAAAAGGGAATGTGTGAAAATACATAACTTTTTCTCTGTACAGTCTATTTCTGGTGGGAAAAAGACAACTTCAGAAGAATGTTCAAATTTCAAAATTCCATACTGACTTTTTTTTCCAAATTTAAGATTTTTTAACCTACCTTAACCTTGTATTTTGTCAATTATTGTTTTCATGCGATGTCTTCCTTTGCTCATTATCTGATTTTCATTCATTTTCCAGAGTTCATTTTTAGCCTACAAAACTCAAAAGATTTTGTTTTTTTTTGTTTCCTGGTTCAATTTACATAAACTGTCCGTATTTTGTGATTTTTTGGTCAGCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTGTTTTTTGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCGATGGGACGTAAAAGGGTGGATAGGACCGCGGTTGAAGGTATGGGACCACGGTTATCATGTGGCAACCACTCTCATGATTGATGGAATCTTTTTGGAACCCCTCTTCCTAGATAGACCCATAGTTTCTTTACCTAAAAATAAGAATGCAAGTTAAACATTTTTATTATAAACAAAAAAATGCACAACAATTAAAATATTCTAGAAAATGATTAGAATGTTAGGCTTGTTGCATAGCTTCCAGTT</canonical>
            <polymorphic>GAGCATGAAGAAAGAAGGCTCTTGAGGAGTTGAACCTGTGGGAAAATATTGGACGTTCTGCGCTGCTACCGGCTGAGCTACGATGGCTAGTCAACCGATGGCTTCTATTAGAAGGGTACTGTAGCCACAGGAGAAAAGGGAATGTGTGAAAATACATAACTTTTTCTCTGTACAGTCTATTTCTGGTGGGAAAAAGACAACTTCAGAAGAATGTTCAAATTTCAAAATTCCATACTGACTTTTTTTTCCAAATTTAAGATTTTTTAACCTACCTTAACCTTGTATTTTGTCAATTATTGTTTTCATGCGATGTCTTCCTTTGCTCATTATCTGATTTTCATTCATTTTCCAGAGTTCATTTTTAGCCTACAAAACTCAAAAGATTTTGTTTTTTTTTGTTTCCTGGTTCAATTTACATAAACTGTCCGTATTTTGTGATTTTTTGGTCAGCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTGTTTTTYGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCGATGGGACGTAAAAGGGTGGATAGGACCGCGGTTGAAGGTATGGGACCACGGTTATCATGTGGCAACCACTCTCATGATTGATGGAATCTTTTTGGAACCCCTCTTCCTAGATAGACCCATAGTTTCTTTACCTAAAAATAAGAATGCAAGTTAAACATTTTTATTATAAACAAAAAAATGCACAACAATTAAAATATTCTAGAAAATGATTAGAATGTTAGGCTTGTTGCATAGCTTCCAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTTTCCTGGTTCAATTTAC</pcr_primer_p1>
		<pcr_primer_p2>TACCGTGATAGGAAGGATAAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTGTTTCCTGGTTCAATTTACATAAACTGTCCGTATTTTGTGATTTTTTGGTCAGCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTGTTTTTTGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTA</canonical_amplicon>
		<polymorphic_amplicon>TTTGTTTCCTGGTTCAATTTACATAAACTGTCCGTATTTTGTGATTTTTTGGTCAGCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTGTTTTTYGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4959</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>567926</contig_pos>
        <strand>+</strand>
        <context>AGAGTGCTCC[A/G]AAAAAGGTWT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCC</left_flank>
        <right_flank>AAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTACCGGCTGAGCTACGATGGCTAGTCAACCGATGGCTTCTATTAGAAGGGTACTGTAGCCACAGGAGAAAAGGGAATGTGTGAAAATACATAACTTTTTCTCTGTACAGTCTATTTCTGGTGGGAAAAAGACAACTTCAGAAGAATGTTCAAATTTCAAAATTCCATACTGACTTTTTTTTCCAAATTTAAGATTTTTTAACCTACCTTAACCTTGTATTTTGTCAATTATTGTTTTCATGCGATGTCTTCCTTTGCTCATTATCTGATTTTCATTCATTTTCCAGAGTTCATTTTTAGCCTACAAAACTCAAAAGATTTTGTTTTTTTTTGTTTCCTGGTTCAATTTACATAAACTGTCCGTATTTTGTGATTTTTTGGTCAGCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTGTTTTTTGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCGATGGGACGTAAAAGGGTGGATAGGACCGCGGTTGAAGGTATGGGACCACGGTTATCATGTGGCAACCACTCTCATGATTGATGGAATCTTTTTGGAACCCCTCTTCCTAGATAGACCCATAGTTTCTTTACCTAAAAATAAGAATGCAAGTTAAACATTTTTATTATAAACAAAAAAATGCACAACAATTAAAATATTCTAGAAAATGATTAGAATGTTAGGCTTGTTGCATAGCTTCCAGTTCTTTAGCGATCCACCGTTTCTCAGATTCCTCGAGCTCTTGCGTCAGTTTCCGTTCCATAACTTGA</canonical>
            <polymorphic>CTACCGGCTGAGCTACGATGGCTAGTCAACCGATGGCTTCTATTAGAAGGGTACTGTAGCCACAGGAGAAAAGGGAATGTGTGAAAATACATAACTTTTTCTCTGTACAGTCTATTTCTGGTGGGAAAAAGACAACTTCAGAAGAATGTTCAAATTTCAAAATTCCATACTGACTTTTTTTTCCAAATTTAAGATTTTTTAACCTACCTTAACCTTGTATTTTGTCAATTATTGTTTTCATGCGATGTCTTCCTTTGCTCATTATCTGATTTTCATTCATTTTCCAGAGTTCATTTTTAGCCTACAAAACTCAAAAGATTTTGTTTTTTTTTGTTTCCTGGTTCAATTTACATAAACTGTCCGTATTTTGTGATTTTTTGGTCAGCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTGTTTTTTGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCRAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCGATGGGACGTAAAAGGGTGGATAGGACCGCGGTTGAAGGTATGGGACCACGGTTATCATGTGGCAACCACTCTCATGATTGATGGAATCTTTTTGGAACCCCTCTTCCTAGATAGACCCATAGTTTCTTTACCTAAAAATAAGAATGCAAGTTAAACATTTTTATTATAAACAAAAAAATGCACAACAATTAAAATATTCTAGAAAATGATTAGAATGTTAGGCTTGTTGCATAGCTTCCAGTTCTTTAGCGATCCACCGTTTCTCAGATTCCTCGAGCTCTTGCGTCAGTTTCCGTTCCATAACTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>322 232 140 137 127 42</canonical_bands>
                <polymorphic_bands>369 322 140 127 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTCAACGAAACAATTTATATG</pcr_primer_p1>
		<pcr_primer_p2>AACATTTAAGGGATCGGACTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTTCAACGAAACAATTTATATGACTTGTTTTTTGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTT</canonical_amplicon>
		<polymorphic_amplicon>TGTTCAACGAAACAATTTATATGACTTGTTTTTTGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCRAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4960</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>567935</contig_pos>
        <strand>+</strand>
        <context>CRAAAAAGGT[A/T]TCTCGGTCCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGT</left_flank>
        <right_flank>TCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCTACGATGGCTAGTCAACCGATGGCTTCTATTAGAAGGGTACTGTAGCCACAGGAGAAAAGGGAATGTGTGAAAATACATAACTTTTTCTCTGTACAGTCTATTTCTGGTGGGAAAAAGACAACTTCAGAAGAATGTTCAAATTTCAAAATTCCATACTGACTTTTTTTTCCAAATTTAAGATTTTTTAACCTACCTTAACCTTGTATTTTGTCAATTATTGTTTTCATGCGATGTCTTCCTTTGCTCATTATCTGATTTTCATTCATTTTCCAGAGTTCATTTTTAGCCTACAAAACTCAAAAGATTTTGTTTTTTTTTGTTTCCTGGTTCAATTTACATAAACTGTCCGTATTTTGTGATTTTTTGGTCAGCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTGTTTTTTGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCGATGGGACGTAAAAGGGTGGATAGGACCGCGGTTGAAGGTATGGGACCACGGTTATCATGTGGCAACCACTCTCATGATTGATGGAATCTTTTTGGAACCCCTCTTCCTAGATAGACCCATAGTTTCTTTACCTAAAAATAAGAATGCAAGTTAAACATTTTTATTATAAACAAAAAAATGCACAACAATTAAAATATTCTAGAAAATGATTAGAATGTTAGGCTTGTTGCATAGCTTCCAGTTCTTTAGCGATCCACCGTTTCTCAGATTCCTCGAGCTCTTGCGTCAGTTTCCGTTCCATAACTTGAGTCTGGCCA</canonical>
            <polymorphic>GAGCTACGATGGCTAGTCAACCGATGGCTTCTATTAGAAGGGTACTGTAGCCACAGGAGAAAAGGGAATGTGTGAAAATACATAACTTTTTCTCTGTACAGTCTATTTCTGGTGGGAAAAAGACAACTTCAGAAGAATGTTCAAATTTCAAAATTCCATACTGACTTTTTTTTCCAAATTTAAGATTTTTTAACCTACCTTAACCTTGTATTTTGTCAATTATTGTTTTCATGCGATGTCTTCCTTTGCTCATTATCTGATTTTCATTCATTTTCCAGAGTTCATTTTTAGCCTACAAAACTCAAAAGATTTTGTTTTTTTTTGTTTCCTGGTTCAATTTACATAAACTGTCCGTATTTTGTGATTTTTTGGTCAGCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTGTTTTTTGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTWTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCGATGGGACGTAAAAGGGTGGATAGGACCGCGGTTGAAGGTATGGGACCACGGTTATCATGTGGCAACCACTCTCATGATTGATGGAATCTTTTTGGAACCCCTCTTCCTAGATAGACCCATAGTTTCTTTACCTAAAAATAAGAATGCAAGTTAAACATTTTTATTATAAACAAAAAAATGCACAACAATTAAAATATTCTAGAAAATGATTAGAATGTTAGGCTTGTTGCATAGCTTCCAGTTCTTTAGCGATCCACCGTTTCTCAGATTCCTCGAGCTCTTGCGTCAGTTTCCGTTCCATAACTTGAGTCTGGCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAGCAAATAACTTATGGTCGT</pcr_primer_p1>
		<pcr_primer_p2>CGCCAAATAAGAAATCTAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCG</canonical_amplicon>
		<polymorphic_amplicon>TAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTWTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4961</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>567949</contig_pos>
        <strand>+</strand>
        <context>CGGTCCCATT[A/G]CCCCGACCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATT</left_flank>
        <right_flank>CCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCAACCGATGGCTTCTATTAGAAGGGTACTGTAGCCACAGGAGAAAAGGGAATGTGTGAAAATACATAACTTTTTCTCTGTACAGTCTATTTCTGGTGGGAAAAAGACAACTTCAGAAGAATGTTCAAATTTCAAAATTCCATACTGACTTTTTTTTCCAAATTTAAGATTTTTTAACCTACCTTAACCTTGTATTTTGTCAATTATTGTTTTCATGCGATGTCTTCCTTTGCTCATTATCTGATTTTCATTCATTTTCCAGAGTTCATTTTTAGCCTACAAAACTCAAAAGATTTTGTTTTTTTTTGTTTCCTGGTTCAATTTACATAAACTGTCCGTATTTTGTGATTTTTTGGTCAGCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTGTTTTTTGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCGATGGGACGTAAAAGGGTGGATAGGACCGCGGTTGAAGGTATGGGACCACGGTTATCATGTGGCAACCACTCTCATGATTGATGGAATCTTTTTGGAACCCCTCTTCCTAGATAGACCCATAGTTTCTTTACCTAAAAATAAGAATGCAAGTTAAACATTTTTATTATAAACAAAAAAATGCACAACAATTAAAATATTCTAGAAAATGATTAGAATGTTAGGCTTGTTGCATAGCTTCCAGTTCTTTAGCGATCCACCGTTTCTCAGATTCCTCGAGCTCTTGCGTCAGTTTCCGTTCCATAACTTGAGTCTGGCCAGCTTGGCGAAAGAA</canonical>
            <polymorphic>AGTCAACCGATGGCTTCTATTAGAAGGGTACTGTAGCCACAGGAGAAAAGGGAATGTGTGAAAATACATAACTTTTTCTCTGTACAGTCTATTTCTGGTGGGAAAAAGACAACTTCAGAAGAATGTTCAAATTTCAAAATTCCATACTGACTTTTTTTTCCAAATTTAAGATTTTTTAACCTACCTTAACCTTGTATTTTGTCAATTATTGTTTTCATGCGATGTCTTCCTTTGCTCATTATCTGATTTTCATTCATTTTCCAGAGTTCATTTTTAGCCTACAAAACTCAAAAGATTTTGTTTTTTTTTGTTTCCTGGTTCAATTTACATAAACTGTCCGTATTTTGTGATTTTTTGGTCAGCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTGTTTTTTGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTRCCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCGATGGGACGTAAAAGGGTGGATAGGACCGCGGTTGAAGGTATGGGACCACGGTTATCATGTGGCAACCACTCTCATGATTGATGGAATCTTTTTGGAACCCCTCTTCCTAGATAGACCCATAGTTTCTTTACCTAAAAATAAGAATGCAAGTTAAACATTTTTATTATAAACAAAAAAATGCACAACAATTAAAATATTCTAGAAAATGATTAGAATGTTAGGCTTGTTGCATAGCTTCCAGTTCTTTAGCGATCCACCGTTTCTCAGATTCCTCGAGCTCTTGCGTCAGTTTCCGTTCCATAACTTGAGTCTGGCCAGCTTGGCGAAAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAGCAAATAACTTATGGTCGT</pcr_primer_p1>
		<pcr_primer_p2>CGCCAAATAAGAAATCTAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCG</canonical_amplicon>
		<polymorphic_amplicon>TAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTRCCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4962</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>568010</contig_pos>
        <strand>+</strand>
        <context>GGTAGCATTT[C/T]TTCTACCATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTT</left_flank>
        <right_flank>TTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATACATAACTTTTTCTCTGTACAGTCTATTTCTGGTGGGAAAAAGACAACTTCAGAAGAATGTTCAAATTTCAAAATTCCATACTGACTTTTTTTTCCAAATTTAAGATTTTTTAACCTACCTTAACCTTGTATTTTGTCAATTATTGTTTTCATGCGATGTCTTCCTTTGCTCATTATCTGATTTTCATTCATTTTCCAGAGTTCATTTTTAGCCTACAAAACTCAAAAGATTTTGTTTTTTTTTGTTTCCTGGTTCAATTTACATAAACTGTCCGTATTTTGTGATTTTTTGGTCAGCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTGTTTTTTGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCGATGGGACGTAAAAGGGTGGATAGGACCGCGGTTGAAGGTATGGGACCACGGTTATCATGTGGCAACCACTCTCATGATTGATGGAATCTTTTTGGAACCCCTCTTCCTAGATAGACCCATAGTTTCTTTACCTAAAAATAAGAATGCAAGTTAAACATTTTTATTATAAACAAAAAAATGCACAACAATTAAAATATTCTAGAAAATGATTAGAATGTTAGGCTTGTTGCATAGCTTCCAGTTCTTTAGCGATCCACCGTTTCTCAGATTCCTCGAGCTCTTGCGTCAGTTTCCGTTCCATAACTTGAGTCTGGCCAGCTTGGCGAAAGAAGAAAATGCAAGCGAAAAAACATAGCACTGGAATTCCAAACACGTAATGATAGAGGTTTAGG</canonical>
            <polymorphic>AAATACATAACTTTTTCTCTGTACAGTCTATTTCTGGTGGGAAAAAGACAACTTCAGAAGAATGTTCAAATTTCAAAATTCCATACTGACTTTTTTTTCCAAATTTAAGATTTTTTAACCTACCTTAACCTTGTATTTTGTCAATTATTGTTTTCATGCGATGTCTTCCTTTGCTCATTATCTGATTTTCATTCATTTTCCAGAGTTCATTTTTAGCCTACAAAACTCAAAAGATTTTGTTTTTTTTTGTTTCCTGGTTCAATTTACATAAACTGTCCGTATTTTGTGATTTTTTGGTCAGCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTGTTTTTTGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTYTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCGATGGGACGTAAAAGGGTGGATAGGACCGCGGTTGAAGGTATGGGACCACGGTTATCATGTGGCAACCACTCTCATGATTGATGGAATCTTTTTGGAACCCCTCTTCCTAGATAGACCCATAGTTTCTTTACCTAAAAATAAGAATGCAAGTTAAACATTTTTATTATAAACAAAAAAATGCACAACAATTAAAATATTCTAGAAAATGATTAGAATGTTAGGCTTGTTGCATAGCTTCCAGTTCTTTAGCGATCCACCGTTTCTCAGATTCCTCGAGCTCTTGCGTCAGTTTCCGTTCCATAACTTGAGTCTGGCCAGCTTGGCGAAAGAAGAAAATGCAAGCGAAAAAACATAGCACTGGAATTCCAAACACGTAATGATAGAGGTTTAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAGCAAATAACTTATGGTCGT</pcr_primer_p1>
		<pcr_primer_p2>CGCCAAATAAGAAATCTAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCG</canonical_amplicon>
		<polymorphic_amplicon>TAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTYTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4963</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>568021</contig_pos>
        <strand>+</strand>
        <context>TTCTACCATG[G/T]CCCAACCCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATG</left_flank>
        <right_flank>CCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCTCTGTACAGTCTATTTCTGGTGGGAAAAAGACAACTTCAGAAGAATGTTCAAATTTCAAAATTCCATACTGACTTTTTTTTCCAAATTTAAGATTTTTTAACCTACCTTAACCTTGTATTTTGTCAATTATTGTTTTCATGCGATGTCTTCCTTTGCTCATTATCTGATTTTCATTCATTTTCCAGAGTTCATTTTTAGCCTACAAAACTCAAAAGATTTTGTTTTTTTTTGTTTCCTGGTTCAATTTACATAAACTGTCCGTATTTTGTGATTTTTTGGTCAGCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTGTTTTTTGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCGATGGGACGTAAAAGGGTGGATAGGACCGCGGTTGAAGGTATGGGACCACGGTTATCATGTGGCAACCACTCTCATGATTGATGGAATCTTTTTGGAACCCCTCTTCCTAGATAGACCCATAGTTTCTTTACCTAAAAATAAGAATGCAAGTTAAACATTTTTATTATAAACAAAAAAATGCACAACAATTAAAATATTCTAGAAAATGATTAGAATGTTAGGCTTGTTGCATAGCTTCCAGTTCTTTAGCGATCCACCGTTTCTCAGATTCCTCGAGCTCTTGCGTCAGTTTCCGTTCCATAACTTGAGTCTGGCCAGCTTGGCGAAAGAAGAAAATGCAAGCGAAAAAACATAGCACTGGAATTCCAAACACGTAATGATAGAGGTTTAGGAATGGAGAGAT</canonical>
            <polymorphic>TTTTTCTCTGTACAGTCTATTTCTGGTGGGAAAAAGACAACTTCAGAAGAATGTTCAAATTTCAAAATTCCATACTGACTTTTTTTTCCAAATTTAAGATTTTTTAACCTACCTTAACCTTGTATTTTGTCAATTATTGTTTTCATGCGATGTCTTCCTTTGCTCATTATCTGATTTTCATTCATTTTCCAGAGTTCATTTTTAGCCTACAAAACTCAAAAGATTTTGTTTTTTTTTGTTTCCTGGTTCAATTTACATAAACTGTCCGTATTTTGTGATTTTTTGGTCAGCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTGTTTTTTGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGKCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCGATGGGACGTAAAAGGGTGGATAGGACCGCGGTTGAAGGTATGGGACCACGGTTATCATGTGGCAACCACTCTCATGATTGATGGAATCTTTTTGGAACCCCTCTTCCTAGATAGACCCATAGTTTCTTTACCTAAAAATAAGAATGCAAGTTAAACATTTTTATTATAAACAAAAAAATGCACAACAATTAAAATATTCTAGAAAATGATTAGAATGTTAGGCTTGTTGCATAGCTTCCAGTTCTTTAGCGATCCACCGTTTCTCAGATTCCTCGAGCTCTTGCGTCAGTTTCCGTTCCATAACTTGAGTCTGGCCAGCTTGGCGAAAGAAGAAAATGCAAGCGAAAAAACATAGCACTGGAATTCCAAACACGTAATGATAGAGGTTTAGGAATGGAGAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAGCAAATAACTTATGGTCGT</pcr_primer_p1>
		<pcr_primer_p2>CGCCAAATAAGAAATCTAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCG</canonical_amplicon>
		<polymorphic_amplicon>TAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGKCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4964</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>568047</contig_pos>
        <strand>+</strand>
        <context>CACGGTCCAA[C/T]TTTTCATTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAA</left_flank>
        <right_flank>TTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGAAAAAGACAACTTCAGAAGAATGTTCAAATTTCAAAATTCCATACTGACTTTTTTTTCCAAATTTAAGATTTTTTAACCTACCTTAACCTTGTATTTTGTCAATTATTGTTTTCATGCGATGTCTTCCTTTGCTCATTATCTGATTTTCATTCATTTTCCAGAGTTCATTTTTAGCCTACAAAACTCAAAAGATTTTGTTTTTTTTTGTTTCCTGGTTCAATTTACATAAACTGTCCGTATTTTGTGATTTTTTGGTCAGCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTGTTTTTTGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCGATGGGACGTAAAAGGGTGGATAGGACCGCGGTTGAAGGTATGGGACCACGGTTATCATGTGGCAACCACTCTCATGATTGATGGAATCTTTTTGGAACCCCTCTTCCTAGATAGACCCATAGTTTCTTTACCTAAAAATAAGAATGCAAGTTAAACATTTTTATTATAAACAAAAAAATGCACAACAATTAAAATATTCTAGAAAATGATTAGAATGTTAGGCTTGTTGCATAGCTTCCAGTTCTTTAGCGATCCACCGTTTCTCAGATTCCTCGAGCTCTTGCGTCAGTTTCCGTTCCATAACTTGAGTCTGGCCAGCTTGGCGAAAGAAGAAAATGCAAGCGAAAAAACATAGCACTGGAATTCCAAACACGTAATGATAGAGGTTTAGGAATGGAGAGATAAAGAAGATGACACAAGATCCAAGGG</canonical>
            <polymorphic>TGGGAAAAAGACAACTTCAGAAGAATGTTCAAATTTCAAAATTCCATACTGACTTTTTTTTCCAAATTTAAGATTTTTTAACCTACCTTAACCTTGTATTTTGTCAATTATTGTTTTCATGCGATGTCTTCCTTTGCTCATTATCTGATTTTCATTCATTTTCCAGAGTTCATTTTTAGCCTACAAAACTCAAAAGATTTTGTTTTTTTTTGTTTCCTGGTTCAATTTACATAAACTGTCCGTATTTTGTGATTTTTTGGTCAGCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTGTTTTTTGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAAYTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCGATGGGACGTAAAAGGGTGGATAGGACCGCGGTTGAAGGTATGGGACCACGGTTATCATGTGGCAACCACTCTCATGATTGATGGAATCTTTTTGGAACCCCTCTTCCTAGATAGACCCATAGTTTCTTTACCTAAAAATAAGAATGCAAGTTAAACATTTTTATTATAAACAAAAAAATGCACAACAATTAAAATATTCTAGAAAATGATTAGAATGTTAGGCTTGTTGCATAGCTTCCAGTTCTTTAGCGATCCACCGTTTCTCAGATTCCTCGAGCTCTTGCGTCAGTTTCCGTTCCATAACTTGAGTCTGGCCAGCTTGGCGAAAGAAGAAAATGCAAGCGAAAAAACATAGCACTGGAATTCCAAACACGTAATGATAGAGGTTTAGGAATGGAGAGATAAAGAAGATGACACAAGATCCAAGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAGCAAATAACTTATGGTCGT</pcr_primer_p1>
		<pcr_primer_p2>CGCCAAATAAGAAATCTAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCG</canonical_amplicon>
		<polymorphic_amplicon>TAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAAYTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4966</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>568144</contig_pos>
        <strand></strand>
        <context>GTGGATAGGA[C/A]MGCGGTTGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTCTTCTAGATTTCTTATTTGGCGATGGGACGTAAAAGGGTGGATAGGA</left_flank>
        <right_flank>CGCGGTTGAAGGTATGGGACCACGGTTATCATGTGGCAACCACTCTCATG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTGTCAATTATTGTTTTCATGCGATGTCTTCCTTTGCTCATTATCTGATTTTCATTCATTTTCCAGAGTTCATTTTTAGCCTACAAAACTCAAAAGATTTTGTTTTTTTTTGTTTCCTGGTTCAATTTACATAAACTGTCCGTATTTTGTGATTTTTTGGTCAGCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTGTTTTTTGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCGATGGGACGTAAAAGGGTGGATAGGACCGCGGTTGAAGGTATGGGACCACGGTTATCATGTGGCAACCACTCTCATGATTGATGGAATCTTTTTGGAACCCCTCTTCCTAGATAGACCCATAGTTTCTTTACCTAAAAATAAGAATGCAAGTTAAACATTTTTATTATAAACAAAAAAATGCACAACAATTAAAATATTCTAGAAAATGATTAGAATGTTAGGCTTGTTGCATAGCTTCCAGTTCTTTAGCGATCCACCGTTTCTCAGATTCCTCGAGCTCTTGCGTCAGTTTCCGTTCCATAACTTGAGTCTGGCCAGCTTGGCGAAAGAAGAAAATGCAAGCGAAAAAACATAGCACTGGAATTCCAAACACGTAATGATAGAGGTTTAGGAATGGAGAGATAAAGAAGATGACACAAGATCCAAGGGACTGAAAATGTGGAATTTGGAATTTTTGAGATAGTAAGCCTACCTGATAGATTTTAGACACTGAAAACGCTTGAGCTCTGCGTTTGGGCATAGCCAG</canonical>
            <polymorphic>ATTTTGTCAATTATTGTTTTCATGCGATGTCTTCCTTTGCTCATTATCTGATTTTCATTCATTTTCCAGAGTTCATTTTTAGCCTACAAAACTCAAAAGATTTTGTTTTTTTTTGTTTCCTGGTTCAATTTACATAAACTGTCCGTATTTTGTGATTTTTTGGTCAGCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTGTTTTTTGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCGATGGGACGTAAAAGGGTGGATAGGAMCGCGGTTGAAGGTATGGGACCACGGTTATCATGTGGCAACCACTCTCATGATTGATGGAATCTTTTTGGAACCCCTCTTCCTAGATAGACCCATAGTTTCTTTACCTAAAAATAAGAATGCAAGTTAAACATTTTTATTATAAACAAAAAAATGCACAACAATTAAAATATTCTAGAAAATGATTAGAATGTTAGGCTTGTTGCATAGCTTCCAGTTCTTTAGCGATCCACCGTTTCTCAGATTCCTCGAGCTCTTGCGTCAGTTTCCGTTCCATAACTTGAGTCTGGCCAGCTTGGCGAAAGAAGAAAATGCAAGCGAAAAAACATAGCACTGGAATTCCAAACACGTAATGATAGAGGTTTAGGAATGGAGAGATAAAGAAGATGACACAAGATCCAAGGGACTGAAAATGTGGAATTTGGAATTTTTGAGATAGTAAGCCTACCTGATAGATTTTAGACACTGAAAACGCTTGAGCTCTGCGTTTGGGCATAGCCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>483 296 101 100 20</canonical_bands>
                <polymorphic_bands>483 296 121 100</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>483 296 101 100 20</canonical_bands>
                <polymorphic_bands>483 296 121 100</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>392 377 108 103 20</canonical_bands>
                <polymorphic_bands>392 377 128 103</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>480 392 108 20</canonical_bands>
                <polymorphic_bands>480 392 128</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGCGG</site>
                <isoschizomers>
                    <enzyme>Cfr42I</enzyme>
                    <enzyme>KspI</enzyme>
                    <enzyme>SacII</enzyme>
                    <enzyme>Sfr303I</enzyme>
                    <enzyme>SgrBI</enzyme>
                    <enzyme>SstII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCCTTCCTATCACGGTAGC</pcr_primer_p1>
		<pcr_primer_p2>GTCTATCTAGGAAGAGGGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCGATGGGACGTAAAAGGGTGGATAGGACCGCGGTTGAAGGTATGGGACCACGGTTATCATGTGGCAACCACTCTCATGATTGATGGAATCTTTTTGGAACCCCTCTTCCTAGATAGAC</canonical_amplicon>
		<polymorphic_amplicon>TATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCGATGGGACGTAAAAGGGTGGATAGGAMCGCGGTTGAAGGTATGGGACCACGGTTATCATGTGGCAACCACTCTCATGATTGATGGAATCTTTTTGGAACCCCTCTTCCTAGATAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4967</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>570050</contig_pos>
        <strand>+</strand>
        <context>GGCGGTAGCC[C/T]TATTAATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAATCCGTTTTTGAAATAAACAAGCTCAGTGGATAGCGGGGCGGTAGCC</left_flank>
        <right_flank>TATTAATTTTCCCACAAGTTCAATTTCCTAATTGGCTCAATAGGGCAAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGACACCAAGAAAGAGAGACGTTGGACTCGATGGTTTTACGAGTTGAGTGGGAAGTGATGTATCCACCGTTACCAGTGTAGTAAACTAAAAAGTTACTTGAATTAAAGAGGCAAATCCATAATTCAGAGGGGTTCAACGACTCAGGAAAACAATGTGATTCAGCGGTATACCCCAATGATCTCAAAGTATTTCTATCCGAATTATTTGCCAATTAAGGATCCTTCCTATTTTTACCATAACTCACAAGCAAATCCAATTCCATTTAAAGCTGATGAAAAATAGTAGTAGTACGAGTTGGTAAACAAGAAGCCCAATGGGAACGATGTGAAGCAGATTGAAGAGATCAGAAGGGTAGTTTTGGCACTGGTTGCATAGAGGAAGGACGGTGAGAAGAAACAAGCGGTGACATAGGCCAGGTAGCAGACGGCTTGGCTGGAATTTTGAGAACAATCCGTTTTTGAAATAAACAAGCTCAGTGGATAGCGGGGCGGTAGCCCTATTAATTTTCCCACAAGTTCAATTTCCTAATTGGCTCAATAGGGCAAGAATTAGGACAACGTTTTTCATGTTCCACCAATGTTCAGATCTTCAGTCCATCATCCGTCTAATATCCGTCCGATGTCCGTCCGGTGTCCGTCCACTTCATCTTCTGGCTGGATTTTTTTGCCCGTTTTTCATACTTTTTTTTTTTTTTTATCAGACGAAGTTCAAAATTGTTAGCTATTTAACATTTATCAAAACGAAATTTACTCACCCATAGTACCCGGCATATGGACTAATCCTCTCGGGTTCCTTCTCATGAATCGAATGTATCACCGATTCCAAAATGAACGACTGTGAATCGTATCCCGTCATGATGCATAACTGCCCAAAGGTGAGCATCATAATGCACAGCATTTCGAATCGACGAGTGGTATTTGCTCCAGAAGACGTTGATGGTTTTGGAGTGTCCATAGTTTTGCTGAAATTGAGATGTACAAAACTAGAACAAAGCAAC</canonical>
            <polymorphic>CTAGACACCAAGAAAGAGAGACGTTGGACTCGATGGTTTTACGAGTTGAGTGGGAAGTGATGTATCCACCGTTACCAGTGTAGTAAACTAAAAAGTTACTTGAATTAAAGAGGCAAATCCATAATTCAGAGGGGTTCAACGACTCAGGAAAACAATGTGATTCAGCGGTATACCCCAATGATCTCAAAGTATTTCTATCCGAATTATTTGCCAATTAAGGATCCTTCCTATTTTTACCATAACTCACAAGCAAATCCAATTCCATTTAAAGCTGATGAAAAATAGTAGTAGTACGAGTTGGTAAACAAGAAGCCCAATGGGAACGATGTGAAGCAGATTGAAGAGATCAGAAGGGTAGTTTTGGCACTGGTTGCATAGAGGAAGGACGGTGAGAAGAAACAAGCGGTGACATAGGCCAGGTAGCAGACGGCTTGGCTGGAATTTTGAGAACAATCCGTTTTTGAAATAAACAAGCTCAGTGGATAGCGGGGCGGTAGCCYTATTAATTTTCCCACAAGTTCAATTTCCTAATTGGCTCAATAGGGCAAGAATTAGGACAACGTTTTTCATGTTCCACCAATGTTCAGATCTTCAGTCCATCATCCGTCTAATATCCGTCCGATGTCCGTCCGGTGTCCGTCCACTTCATCTTCTGGCTGGATTTTTTTGCCCGTTTTTCATACTTTTTTTTTTTTTTTATCAGACGAAGTTCAAAATTGTTAGCTATTTAACATTTATCAAAACGAAATTTACTCACCCATAGTACCCGGCATATGGACTAATCCTCTCGGGTTCCTTCTCATGAATCGAATGTATCACCGATTCCAAAATGAACGACTGTGAATCGTATCCCGTCATGATGCATAACTGCCCAAAGGTGAGCATCATAATGCACAGCATTTCGAATCGACGAGTGGTATTTGCTCCAGAAGACGTTGATGGTTTTGGAGTGTCCATAGTTTTGCTGAAATTGAGATGTACAAAACTAGAACAAAGCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTGAAGCAGATTGAAGAGAT</pcr_primer_p1>
		<pcr_primer_p2>ACATGAAAAACGTTGTCCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATGTGAAGCAGATTGAAGAGATCAGAAGGGTAGTTTTGGCACTGGTTGCATAGAGGAAGGACGGTGAGAAGAAACAAGCGGTGACATAGGCCAGGTAGCAGACGGCTTGGCTGGAATTTTGAGAACAATCCGTTTTTGAAATAAACAAGCTCAGTGGATAGCGGGGCGGTAGCCCTATTAATTTTCCCACAAGTTCAATTTCCTAATTGGCTCAATAGGGCAAGAATTAGGACAACGTTTTTCATGT</canonical_amplicon>
		<polymorphic_amplicon>ATGTGAAGCAGATTGAAGAGATCAGAAGGGTAGTTTTGGCACTGGTTGCATAGAGGAAGGACGGTGAGAAGAAACAAGCGGTGACATAGGCCAGGTAGCAGACGGCTTGGCTGGAATTTTGAGAACAATCCGTTTTTGAAATAAACAAGCTCAGTGGATAGCGGGGCGGTAGCCYTATTAATTTTCCCACAAGTTCAATTTCCTAATTGGCTCAATAGGGCAAGAATTAGGACAACGTTTTTCATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4968</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>569925</contig_pos>
        <strand>+</strand>
        <context>CACTGGTTGC[A/G]TAGAGGAAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATGTGAAGCAGATTGAAGAGATCAGAAGGGTAGTTTTGGCACTGGTTGC</left_flank>
        <right_flank>TAGAGGAAGGACGGTGAGAAGAAACAAGCGGTGACATAGGCCAGGTAGCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATCTTCTTTCTATTCCATGACCACCGATTGTGATCTTAGCTGCTGTTTCCAGAATTTCTGGCGCCTGGGTTACTGCTGTGATTATCGCCATTATGATTGACCCAACGATCATACAACAGCATCCTAGACACCAAGAAAGAGAGACGTTGGACTCGATGGTTTTACGAGTTGAGTGGGAAGTGATGTATCCACCGTTACCAGTGTAGTAAACTAAAAAGTTACTTGAATTAAAGAGGCAAATCCATAATTCAGAGGGGTTCAACGACTCAGGAAAACAATGTGATTCAGCGGTATACCCCAATGATCTCAAAGTATTTCTATCCGAATTATTTGCCAATTAAGGATCCTTCCTATTTTTACCATAACTCACAAGCAAATCCAATTCCATTTAAAGCTGATGAAAAATAGTAGTAGTACGAGTTGGTAAACAAGAAGCCCAATGGGAACGATGTGAAGCAGATTGAAGAGATCAGAAGGGTAGTTTTGGCACTGGTTGCATAGAGGAAGGACGGTGAGAAGAAACAAGCGGTGACATAGGCCAGGTAGCAGACGGCTTGGCTGGAATTTTGAGAACAATCCGTTTTTGAAATAAACAAGCTCAGTGGATAGCGGGGCGGTAGCCCTATTAATTTTCCCACAAGTTCAATTTCCTAATTGGCTCAATAGGGCAAGAATTAGGACAACGTTTTTCATGTTCCACCAATGTTCAGATCTTCAGTCCATCATCCGTCTAATATCCGTCCGATGTCCGTCCGGTGTCCGTCCACTTCATCTTCTGGCTGGATTTTTTTGCCCGTTTTTCATACTTTTTTTTTTTTTTTATCAGACGAAGTTCAAAATTGTTAGCTATTTAACATTTATCAAAACGAAATTTACTCACCCATAGTACCCGGCATATGGACTAATCCTCTCGGGTTCCTTCTCATGAATCGAATGTATCACCGATTCCAAAATGAACGACTGTGAATCGTATCCCGTCATGATGCATAACTGCCCAA</canonical>
            <polymorphic>AAATCTTCTTTCTATTCCATGACCACCGATTGTGATCTTAGCTGCTGTTTCCAGAATTTCTGGCGCCTGGGTTACTGCTGTGATTATCGCCATTATGATTGACCCAACGATCATACAACAGCATCCTAGACACCAAGAAAGAGAGACGTTGGACTCGATGGTTTTACGAGTTGAGTGGGAAGTGATGTATCCACCGTTACCAGTGTAGTAAACTAAAAAGTTACTTGAATTAAAGAGGCAAATCCATAATTCAGAGGGGTTCAACGACTCAGGAAAACAATGTGATTCAGCGGTATACCCCAATGATCTCAAAGTATTTCTATCCGAATTATTTGCCAATTAAGGATCCTTCCTATTTTTACCATAACTCACAAGCAAATCCAATTCCATTTAAAGCTGATGAAAAATAGTAGTAGTACGAGTTGGTAAACAAGAAGCCCAATGGGAACGATGTGAAGCAGATTGAAGAGATCAGAAGGGTAGTTTTGGCACTGGTTGCRTAGAGGAAGGACGGTGAGAAGAAACAAGCGGTGACATAGGCCAGGTAGCAGACGGCTTGGCTGGAATTTTGAGAACAATCCGTTTTTGAAATAAACAAGCTCAGTGGATAGCGGGGCGGTAGCCCTATTAATTTTCCCACAAGTTCAATTTCCTAATTGGCTCAATAGGGCAAGAATTAGGACAACGTTTTTCATGTTCCACCAATGTTCAGATCTTCAGTCCATCATCCGTCTAATATCCGTCCGATGTCCGTCCGGTGTCCGTCCACTTCATCTTCTGGCTGGATTTTTTTGCCCGTTTTTCATACTTTTTTTTTTTTTTTATCAGACGAAGTTCAAAATTGTTAGCTATTTAACATTTATCAAAACGAAATTTACTCACCCATAGTACCCGGCATATGGACTAATCCTCTCGGGTTCCTTCTCATGAATCGAATGTATCACCGATTCCAAAATGAACGACTGTGAATCGTATCCCGTCATGATGCATAACTGCCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>498 489 13</canonical_bands>
                <polymorphic_bands>987 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACCATAACTCACAAGCAAATC</pcr_primer_p1>
		<pcr_primer_p2>TATCCACTGAGCTTGTTTATTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTACCATAACTCACAAGCAAATCCAATTCCATTTAAAGCTGATGAAAAATAGTAGTAGTACGAGTTGGTAAACAAGAAGCCCAATGGGAACGATGTGAAGCAGATTGAAGAGATCAGAAGGGTAGTTTTGGCACTGGTTGCATAGAGGAAGGACGGTGAGAAGAAACAAGCGGTGACATAGGCCAGGTAGCAGACGGCTTGGCTGGAATTTTGAGAACAATCCGTTTTTGAAATAAACAAGCTCAGTGGATA</canonical_amplicon>
		<polymorphic_amplicon>TTACCATAACTCACAAGCAAATCCAATTCCATTTAAAGCTGATGAAAAATAGTAGTAGTACGAGTTGGTAAACAAGAAGCCCAATGGGAACGATGTGAAGCAGATTGAAGAGATCAGAAGGGTAGTTTTGGCACTGGTTGCRTAGAGGAAGGACGGTGAGAAGAAACAAGCGGTGACATAGGCCAGGTAGCAGACGGCTTGGCTGGAATTTTGAGAACAATCCGTTTTTGAAATAAACAAGCTCAGTGGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb4969</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>569767</contig_pos>
        <strand>+</strand>
        <context>TTTGCCAATT[A/T]AGGATCCTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTATACCCCAATGATCTCAAAGTATTTCTATCCGAATTATTTGCCAATT</left_flank>
        <right_flank>AGGATCCTTCCTATTTTTACCATAACTCACAAGCAAATCCAATTCCATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTAGATTCTATGCAATTCGCGACATCTTGGGATGGCAGGAGCATGAAAATGAAAATGGCTAGTGAGGAGATGGCGGCGAAGACAGAGAATAGGAGGTAGCTGAAAGTGTCAAAACTTGGTACTTGAAATCTGAAACAAGTTACATTTCACTATCCCCAAATCTTCTTTCTATTCCATGACCACCGATTGTGATCTTAGCTGCTGTTTCCAGAATTTCTGGCGCCTGGGTTACTGCTGTGATTATCGCCATTATGATTGACCCAACGATCATACAACAGCATCCTAGACACCAAGAAAGAGAGACGTTGGACTCGATGGTTTTACGAGTTGAGTGGGAAGTGATGTATCCACCGTTACCAGTGTAGTAAACTAAAAAGTTACTTGAATTAAAGAGGCAAATCCATAATTCAGAGGGGTTCAACGACTCAGGAAAACAATGTGATTCAGCGGTATACCCCAATGATCTCAAAGTATTTCTATCCGAATTATTTGCCAATTAAGGATCCTTCCTATTTTTACCATAACTCACAAGCAAATCCAATTCCATTTAAAGCTGATGAAAAATAGTAGTAGTACGAGTTGGTAAACAAGAAGCCCAATGGGAACGATGTGAAGCAGATTGAAGAGATCAGAAGGGTAGTTTTGGCACTGGTTGCATAGAGGAAGGACGGTGAGAAGAAACAAGCGGTGACATAGGCCAGGTAGCAGACGGCTTGGCTGGAATTTTGAGAACAATCCGTTTTTGAAATAAACAAGCTCAGTGGATAGCGGGGCGGTAGCCCTATTAATTTTCCCACAAGTTCAATTTCCTAATTGGCTCAATAGGGCAAGAATTAGGACAACGTTTTTCATGTTCCACCAATGTTCAGATCTTCAGTCCATCATCCGTCTAATATCCGTCCGATGTCCGTCCGGTGTCCGTCCACTTCATCTTCTGGCTGGATTTTTTTGCCCGTTTTTCATACTTTTTTTTTTTTTTTATCAGACGAAGTTCAAAAT</canonical>
            <polymorphic>ACTAGATTCTATGCAATTCGCGACATCTTGGGATGGCAGGAGCATGAAAATGAAAATGGCTAGTGAGGAGATGGCGGCGAAGACAGAGAATAGGAGGTAGCTGAAAGTGTCAAAACTTGGTACTTGAAATCTGAAACAAGTTACATTTCACTATCCCCAAATCTTCTTTCTATTCCATGACCACCGATTGTGATCTTAGCTGCTGTTTCCAGAATTTCTGGCGCCTGGGTTACTGCTGTGATTATCGCCATTATGATTGACCCAACGATCATACAACAGCATCCTAGACACCAAGAAAGAGAGACGTTGGACTCGATGGTTTTACGAGTTGAGTGGGAAGTGATGTATCCACCGTTACCAGTGTAGTAAACTAAAAAGTTACTTGAATTAAAGAGGCAAATCCATAATTCAGAGGGGTTCAACGACTCAGGAAAACAATGTGATTCAGCGGTATACCCCAATGATCTCAAAGTATTTCTATCCGAATTATTTGCCAATTWAGGATCCTTCCTATTTTTACCATAACTCACAAGCAAATCCAATTCCATTTAAAGCTGATGAAAAATAGTAGTAGTACGAGTTGGTAAACAAGAAGCCCAATGGGAACGATGTGAAGCAGATTGAAGAGATCAGAAGGGTAGTTTTGGCACTGGTTGCATAGAGGAAGGACGGTGAGAAGAAACAAGCGGTGACATAGGCCAGGTAGCAGACGGCTTGGCTGGAATTTTGAGAACAATCCGTTTTTGAAATAAACAAGCTCAGTGGATAGCGGGGCGGTAGCCCTATTAATTTTCCCACAAGTTCAATTTCCTAATTGGCTCAATAGGGCAAGAATTAGGACAACGTTTTTCATGTTCCACCAATGTTCAGATCTTCAGTCCATCATCCGTCTAATATCCGTCCGATGTCCGTCCGGTGTCCGTCCACTTCATCTTCTGGCTGGATTTTTTTGCCCGTTTTTCATACTTTTTTTTTTTTTTTATCAGACGAAGTTCAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>388 237 214 110 51</canonical_bands>
                <polymorphic_bands>388 237 214 161</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACTTGAATTAAAGAGGCAAATC</pcr_primer_p1>
		<pcr_primer_p2>ATCTCTTCAATCTGCTTCACAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TACTTGAATTAAAGAGGCAAATCCATAATTCAGAGGGGTTCAACGACTCAGGAAAACAATGTGATTCAGCGGTATACCCCAATGATCTCAAAGTATTTCTATCCGAATTATTTGCCAATTAAGGATCCTTCCTATTTTTACCATAACTCACAAGCAAATCCAATTCCATTTAAAGCTGATGAAAAATAGTAGTAGTACGAGTTGGTAAACAAGAAGCCCAATGGGAACGATGTGAAGCAGATTGAAGAGAT</canonical_amplicon>
		<polymorphic_amplicon>TACTTGAATTAAAGAGGCAAATCCATAATTCAGAGGGGTTCAACGACTCAGGAAAACAATGTGATTCAGCGGTATACCCCAATGATCTCAAAGTATTTCTATCCGAATTATTTGCCAATTWAGGATCCTTCCTATTTTTACCATAACTCACAAGCAAATCCAATTCCATTTAAAGCTGATGAAAAATAGTAGTAGTACGAGTTGGTAAACAAGAAGCCCAATGGGAACGATGTGAAGCAGATTGAAGAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5015</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>569686</contig_pos>
        <strand>+</strand>
        <context>TCAGAGGGGT[A/T]CAACGACTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACTAAAAAGTTACTTGAATTAAAGAGGCAAATCCATAATTCAGAGGGGT</left_flank>
        <right_flank>CAACGACTCAGGAAAACAATGTGATTCAGCGGTATACCCCAATGATCTCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATGAAGCCTCGCGCTTTGTAAGAACAAAGCTGTAAAGAAAATACTCACTCATCCCATCTGTAAAGCTAACTTGCTTATCACTAGATTCTATGCAATTCGCGACATCTTGGGATGGCAGGAGCATGAAAATGAAAATGGCTAGTGAGGAGATGGCGGCGAAGACAGAGAATAGGAGGTAGCTGAAAGTGTCAAAACTTGGTACTTGAAATCTGAAACAAGTTACATTTCACTATCCCCAAATCTTCTTTCTATTCCATGACCACCGATTGTGATCTTAGCTGCTGTTTCCAGAATTTCTGGCGCCTGGGTTACTGCTGTGATTATCGCCATTATGATTGACCCAACGATCATACAACAGCATCCTAGACACCAAGAAAGAGAGACGTTGGACTCGATGGTTTTACGAGTTGAGTGGGAAGTGATGTATCCACCGTTACCAGTGTAGTAAACTAAAAAGTTACTTGAATTAAAGAGGCAAATCCATAATTCAGAGGGGTTCAACGACTCAGGAAAACAATGTGATTCAGCGGTATACCCCAATGATCTCAAAGTATTTCTATCCGAATTATTTGCCAATTAAGGATCCTTCCTATTTTTACCATAACTCACAAGCAAATCCAATTCCATTTAAAGCTGATGAAAAATAGTAGTAGTACGAGTTGGTAAACAAGAAGCCCAATGGGAACGATGTGAAGCAGATTGAAGAGATCAGAAGGGTAGTTTTGGCACTGGTTGCATAGAGGAAGGACGGTGAGAAGAAACAAGCGGTGACATAGGCCAGGTAGCAGACGGCTTGGCTGGAATTTTGAGAACAATCCGTTTTTGAAATAAACAAGCTCAGTGGATAGCGGGGCGGTAGCCCTATTAATTTTCCCACAAGTTCAATTTCCTAATTGGCTCAATAGGGCAAGAATTAGGACAACGTTTTTCATGTTCCACCAATGTTCAGATCTTCAGTCCATCATCCGTCTAATATCCGTCCGATGTCCGTCCGGTGT</canonical>
            <polymorphic>TCATGAAGCCTCGCGCTTTGTAAGAACAAAGCTGTAAAGAAAATACTCACTCATCCCATCTGTAAAGCTAACTTGCTTATCACTAGATTCTATGCAATTCGCGACATCTTGGGATGGCAGGAGCATGAAAATGAAAATGGCTAGTGAGGAGATGGCGGCGAAGACAGAGAATAGGAGGTAGCTGAAAGTGTCAAAACTTGGTACTTGAAATCTGAAACAAGTTACATTTCACTATCCCCAAATCTTCTTTCTATTCCATGACCACCGATTGTGATCTTAGCTGCTGTTTCCAGAATTTCTGGCGCCTGGGTTACTGCTGTGATTATCGCCATTATGATTGACCCAACGATCATACAACAGCATCCTAGACACCAAGAAAGAGAGACGTTGGACTCGATGGTTTTACGAGTTGAGTGGGAAGTGATGTATCCACCGTTACCAGTGTAGTAAACTAAAAAGTTACTTGAATTAAAGAGGCAAATCCATAATTCAGAGGGGTWCAACGACTCAGGAAAACAATGTGATTCAGCGGTATACCCCAATGATCTCAAAGTATTTCTATCCGAATTATTTGCCAATTAAGGATCCTTCCTATTTTTACCATAACTCACAAGCAAATCCAATTCCATTTAAAGCTGATGAAAAATAGTAGTAGTACGAGTTGGTAAACAAGAAGCCCAATGGGAACGATGTGAAGCAGATTGAAGAGATCAGAAGGGTAGTTTTGGCACTGGTTGCATAGAGGAAGGACGGTGAGAAGAAACAAGCGGTGACATAGGCCAGGTAGCAGACGGCTTGGCTGGAATTTTGAGAACAATCCGTTTTTGAAATAAACAAGCTCAGTGGATAGCGGGGCGGTAGCCCTATTAATTTTCCCACAAGTTCAATTTCCTAATTGGCTCAATAGGGCAAGAATTAGGACAACGTTTTTCATGTTCCACCAATGTTCAGATCTTCAGTCCATCATCCGTCTAATATCCGTCCGATGTCCGTCCGGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAGAGAGACGTTGGACTC</pcr_primer_p1>
		<pcr_primer_p2>ATTGGATTTGCTTGTGAGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAAGAGAGACGTTGGACTCGATGGTTTTACGAGTTGAGTGGGAAGTGATGTATCCACCGTTACCAGTGTAGTAAACTAAAAAGTTACTTGAATTAAAGAGGCAAATCCATAATTCAGAGGGGTTCAACGACTCAGGAAAACAATGTGATTCAGCGGTATACCCCAATGATCTCAAAGTATTTCTATCCGAATTATTTGCCAATTAAGGATCCTTCCTATTTTTACCATAACTCACAAGCAAATCCAAT</canonical_amplicon>
		<polymorphic_amplicon>AGAAAGAGAGACGTTGGACTCGATGGTTTTACGAGTTGAGTGGGAAGTGATGTATCCACCGTTACCAGTGTAGTAAACTAAAAAGTTACTTGAATTAAAGAGGCAAATCCATAATTCAGAGGGGTWCAACGACTCAGGAAAACAATGTGATTCAGCGGTATACCCCAATGATCTCAAAGTATTTCTATCCGAATTATTTGCCAATTAAGGATCCTTCCTATTTTTACCATAACTCACAAGCAAATCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5016</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>569556</contig_pos>
        <strand>+</strand>
        <context>GCATCCTAGA[C/G]ACCAAGAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGATTATCGCCATTATGATTGACCCAACGATCATACAACAGCATCCTAGA</left_flank>
        <right_flank>ACCAAGAAAGAGAGACGTTGGACTCGATGGTTTTACGAGTTGAGTGGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAAGTCAAAGTTGTCGGGAAAACGGACAACCAGAATGACGTATGAATTCCTGTGAGCAGGAATGTTGGCGCCAATTTGAACATTTTTGAGGAGACCAGCGTATCGGCCATGAGTTCTGAAATTGAGATTCATGAAGCCTCGCGCTTTGTAAGAACAAAGCTGTAAAGAAAATACTCACTCATCCCATCTGTAAAGCTAACTTGCTTATCACTAGATTCTATGCAATTCGCGACATCTTGGGATGGCAGGAGCATGAAAATGAAAATGGCTAGTGAGGAGATGGCGGCGAAGACAGAGAATAGGAGGTAGCTGAAAGTGTCAAAACTTGGTACTTGAAATCTGAAACAAGTTACATTTCACTATCCCCAAATCTTCTTTCTATTCCATGACCACCGATTGTGATCTTAGCTGCTGTTTCCAGAATTTCTGGCGCCTGGGTTACTGCTGTGATTATCGCCATTATGATTGACCCAACGATCATACAACAGCATCCTAGACACCAAGAAAGAGAGACGTTGGACTCGATGGTTTTACGAGTTGAGTGGGAAGTGATGTATCCACCGTTACCAGTGTAGTAAACTAAAAAGTTACTTGAATTAAAGAGGCAAATCCATAATTCAGAGGGGTTCAACGACTCAGGAAAACAATGTGATTCAGCGGTATACCCCAATGATCTCAAAGTATTTCTATCCGAATTATTTGCCAATTAAGGATCCTTCCTATTTTTACCATAACTCACAAGCAAATCCAATTCCATTTAAAGCTGATGAAAAATAGTAGTAGTACGAGTTGGTAAACAAGAAGCCCAATGGGAACGATGTGAAGCAGATTGAAGAGATCAGAAGGGTAGTTTTGGCACTGGTTGCATAGAGGAAGGACGGTGAGAAGAAACAAGCGGTGACATAGGCCAGGTAGCAGACGGCTTGGCTGGAATTTTGAGAACAATCCGTTTTTGAAATAAACAAGCTCAGTGGATAGCGGGGCGGTAGCCCTATTAA</canonical>
            <polymorphic>TGAAAGTCAAAGTTGTCGGGAAAACGGACAACCAGAATGACGTATGAATTCCTGTGAGCAGGAATGTTGGCGCCAATTTGAACATTTTTGAGGAGACCAGCGTATCGGCCATGAGTTCTGAAATTGAGATTCATGAAGCCTCGCGCTTTGTAAGAACAAAGCTGTAAAGAAAATACTCACTCATCCCATCTGTAAAGCTAACTTGCTTATCACTAGATTCTATGCAATTCGCGACATCTTGGGATGGCAGGAGCATGAAAATGAAAATGGCTAGTGAGGAGATGGCGGCGAAGACAGAGAATAGGAGGTAGCTGAAAGTGTCAAAACTTGGTACTTGAAATCTGAAACAAGTTACATTTCACTATCCCCAAATCTTCTTTCTATTCCATGACCACCGATTGTGATCTTAGCTGCTGTTTCCAGAATTTCTGGCGCCTGGGTTACTGCTGTGATTATCGCCATTATGATTGACCCAACGATCATACAACAGCATCCTAGASACCAAGAAAGAGAGACGTTGGACTCGATGGTTTTACGAGTTGAGTGGGAAGTGATGTATCCACCGTTACCAGTGTAGTAAACTAAAAAGTTACTTGAATTAAAGAGGCAAATCCATAATTCAGAGGGGTTCAACGACTCAGGAAAACAATGTGATTCAGCGGTATACCCCAATGATCTCAAAGTATTTCTATCCGAATTATTTGCCAATTAAGGATCCTTCCTATTTTTACCATAACTCACAAGCAAATCCAATTCCATTTAAAGCTGATGAAAAATAGTAGTAGTACGAGTTGGTAAACAAGAAGCCCAATGGGAACGATGTGAAGCAGATTGAAGAGATCAGAAGGGTAGTTTTGGCACTGGTTGCATAGAGGAAGGACGGTGAGAAGAAACAAGCGGTGACATAGGCCAGGTAGCAGACGGCTTGGCTGGAATTTTGAGAACAATCCGTTTTTGAAATAAACAAGCTCAGTGGATAGCGGGGCGGTAGCCCTATTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>123 87 84 79 73 64 56 50 48 45 44 41 36 33 33 25 25 17 12 9 9 7</canonical_bands>
                <polymorphic_bands>123 95 87 84 79 73 64 56 48 44 41 36 33 33 25 25 17 12 9 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCTTCTTTCTATTCCATGACC</pcr_primer_p1>
		<pcr_primer_p2>AATTATGGATTTGCCTCTTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCTTCTTTCTATTCCATGACCACCGATTGTGATCTTAGCTGCTGTTTCCAGAATTTCTGGCGCCTGGGTTACTGCTGTGATTATCGCCATTATGATTGACCCAACGATCATACAACAGCATCCTAGACACCAAGAAAGAGAGACGTTGGACTCGATGGTTTTACGAGTTGAGTGGGAAGTGATGTATCCACCGTTACCAGTGTAGTAAACTAAAAAGTTACTTGAATTAAAGAGGCAAATCCATAATT</canonical_amplicon>
		<polymorphic_amplicon>AATCTTCTTTCTATTCCATGACCACCGATTGTGATCTTAGCTGCTGTTTCCAGAATTTCTGGCGCCTGGGTTACTGCTGTGATTATCGCCATTATGATTGACCCAACGATCATACAACAGCATCCTAGASACCAAGAAAGAGAGACGTTGGACTCGATGGTTTTACGAGTTGAGTGGGAAGTGATGTATCCACCGTTACCAGTGTAGTAAACTAAAAAGTTACTTGAATTAAAGAGGCAAATCCATAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5017</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>569522</contig_pos>
        <strand>+</strand>
        <context>TCGCCATTAT[A/G]ATTGACCCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTCCAGAATTTCTGGCGCCTGGGTTACTGCTGTGATTATCGCCATTAT</left_flank>
        <right_flank>ATTGACCCAACGATCATACAACAGCATCCTAGACACCAAGAAAGAGAGAC</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGGGAAGATAGATCAATTTCGAATTGTGCATGTTGAAAGTCAAAGTTGTCGGGAAAACGGACAACCAGAATGACGTATGAATTCCTGTGAGCAGGAATGTTGGCGCCAATTTGAACATTTTTGAGGAGACCAGCGTATCGGCCATGAGTTCTGAAATTGAGATTCATGAAGCCTCGCGCTTTGTAAGAACAAAGCTGTAAAGAAAATACTCACTCATCCCATCTGTAAAGCTAACTTGCTTATCACTAGATTCTATGCAATTCGCGACATCTTGGGATGGCAGGAGCATGAAAATGAAAATGGCTAGTGAGGAGATGGCGGCGAAGACAGAGAATAGGAGGTAGCTGAAAGTGTCAAAACTTGGTACTTGAAATCTGAAACAAGTTACATTTCACTATCCCCAAATCTTCTTTCTATTCCATGACCACCGATTGTGATCTTAGCTGCTGTTTCCAGAATTTCTGGCGCCTGGGTTACTGCTGTGATTATCGCCATTATGATTGACCCAACGATCATACAACAGCATCCTAGACACCAAGAAAGAGAGACGTTGGACTCGATGGTTTTACGAGTTGAGTGGGAAGTGATGTATCCACCGTTACCAGTGTAGTAAACTAAAAAGTTACTTGAATTAAAGAGGCAAATCCATAATTCAGAGGGGTTCAACGACTCAGGAAAACAATGTGATTCAGCGGTATACCCCAATGATCTCAAAGTATTTCTATCCGAATTATTTGCCAATTAAGGATCCTTCCTATTTTTACCATAACTCACAAGCAAATCCAATTCCATTTAAAGCTGATGAAAAATAGTAGTAGTACGAGTTGGTAAACAAGAAGCCCAATGGGAACGATGTGAAGCAGATTGAAGAGATCAGAAGGGTAGTTTTGGCACTGGTTGCATAGAGGAAGGACGGTGAGAAGAAACAAGCGGTGACATAGGCCAGGTAGCAGACGGCTTGGCTGGAATTTTGAGAACAATCCGTTTTTGAAATAAACA</canonical>
            <polymorphic>GCGGGAAGATAGATCAATTTCGAATTGTGCATGTTGAAAGTCAAAGTTGTCGGGAAAACGGACAACCAGAATGACGTATGAATTCCTGTGAGCAGGAATGTTGGCGCCAATTTGAACATTTTTGAGGAGACCAGCGTATCGGCCATGAGTTCTGAAATTGAGATTCATGAAGCCTCGCGCTTTGTAAGAACAAAGCTGTAAAGAAAATACTCACTCATCCCATCTGTAAAGCTAACTTGCTTATCACTAGATTCTATGCAATTCGCGACATCTTGGGATGGCAGGAGCATGAAAATGAAAATGGCTAGTGAGGAGATGGCGGCGAAGACAGAGAATAGGAGGTAGCTGAAAGTGTCAAAACTTGGTACTTGAAATCTGAAACAAGTTACATTTCACTATCCCCAAATCTTCTTTCTATTCCATGACCACCGATTGTGATCTTAGCTGCTGTTTCCAGAATTTCTGGCGCCTGGGTTACTGCTGTGATTATCGCCATTATRATTGACCCAACGATCATACAACAGCATCCTAGACACCAAGAAAGAGAGACGTTGGACTCGATGGTTTTACGAGTTGAGTGGGAAGTGATGTATCCACCGTTACCAGTGTAGTAAACTAAAAAGTTACTTGAATTAAAGAGGCAAATCCATAATTCAGAGGGGTTCAACGACTCAGGAAAACAATGTGATTCAGCGGTATACCCCAATGATCTCAAAGTATTTCTATCCGAATTATTTGCCAATTAAGGATCCTTCCTATTTTTACCATAACTCACAAGCAAATCCAATTCCATTTAAAGCTGATGAAAAATAGTAGTAGTACGAGTTGGTAAACAAGAAGCCCAATGGGAACGATGTGAAGCAGATTGAAGAGATCAGAAGGGTAGTTTTGGCACTGGTTGCATAGAGGAAGGACGGTGAGAAGAAACAAGCGGTGACATAGGCCAGGTAGCAGACGGCTTGGCTGGAATTTTGAGAACAATCCGTTTTTGAAATAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCTTCTTTCTATTCCATGACC</pcr_primer_p1>
		<pcr_primer_p2>AATTATGGATTTGCCTCTTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCTTCTTTCTATTCCATGACCACCGATTGTGATCTTAGCTGCTGTTTCCAGAATTTCTGGCGCCTGGGTTACTGCTGTGATTATCGCCATTATGATTGACCCAACGATCATACAACAGCATCCTAGACACCAAGAAAGAGAGACGTTGGACTCGATGGTTTTACGAGTTGAGTGGGAAGTGATGTATCCACCGTTACCAGTGTAGTAAACTAAAAAGTTACTTGAATTAAAGAGGCAAATCCATAATT</canonical_amplicon>
		<polymorphic_amplicon>AATCTTCTTTCTATTCCATGACCACCGATTGTGATCTTAGCTGCTGTTTCCAGAATTTCTGGCGCCTGGGTTACTGCTGTGATTATCGCCATTATRATTGACCCAACGATCATACAACAGCATCCTAGACACCAAGAAAGAGAGACGTTGGACTCGATGGTTTTACGAGTTGAGTGGGAAGTGATGTATCCACCGTTACCAGTGTAGTAAACTAAAAAGTTACTTGAATTAAAGAGGCAAATCCATAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5018</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>627000</contig_pos>
        <strand>+</strand>
        <context>GTCGATTTCT[G/T]GTACCTGACC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTTCTTCAGAAATTCCAGATTTTTCGATTGTATGATCTGTCGATTTCT</left_flank>
        <right_flank>GTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATATGTATAGTTTCAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATGTTCATAGACAAGATACAGTATTCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCCACCAGCAGCTCAAGCTTCACAAGAATCCCAAAAAGAGATCGCACATCGCCGGAGAAGGGAGAGCCATCATCAAAGCGCTCCGGTAAGTTCTCAAACCCCAATTCAAAACCATAGCTTTGAAAATGCCAGCTCCATTCNCCGGATTACAAGTATGCTATTTTGGGTATCACCGCAAAATTAAAGTTTTGCCGAACTTTCAGATTTTTTTTTCTTCAGAAATTCCAGATTTTTCGATTGTATGATCTGTCGATTTCTGGTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATATGTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTCATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCACAAAAACGTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCAAGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATT</canonical>
            <polymorphic>CTATGTTCATAGACAAGATACAGTATTCCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCCACCAGCAGCTCAAGCTTCACAAGAATCCCAAAAAGAGATCGCACATCGCCGGAGAAGGGAGAGCCATCATCAAAGCGCTCCGGTAAGTTCTCAAACCCCAATTCAAAACCATAGCTTTGAAAATGCCAGCTCCATTCNCCGGATTACAAGTATGCTATTTTGGGTATCACCGCAAAATTAAAGTTTTGCCGAACTTTCAGATTTTTTTTTCTTCAGAAATTCCAGATTTTTCGATTGTATGATCTGTCGATTTCTKGTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATATGTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTCATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCACAAAAACGTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCAAGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGTACC</site>
                <isoschizomers>
                    <enzyme>Acc65I</enzyme>
                    <enzyme>Asp718I</enzyme>
                    <enzyme>KpnI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 335 163</canonical_bands>
                <polymorphic_bands>665 335</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGATTACAAGTATGCTATTTTG</pcr_primer_p1>
		<pcr_primer_p2>AACTGTGTACGTGACGATTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>CGGATTACAAGTATGCTATTTTGGGTATCACCGCAAAATTAAAGTTTTGCCGAACTTTCAGATTTTTTTTTCTTCAGAAATTCCAGATTTTTCGATTGTATGATCTGTCGATTTCTGGTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATATGTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTCATATAAAATCGTCACGTACACAGTT</canonical_amplicon>
		<polymorphic_amplicon>CGGATTACAAGTATGCTATTTTGGGTATCACCGCAAAATTAAAGTTTTGCCGAACTTTCAGATTTTTTTTTCTTCAGAAATTCCAGATTTTTCGATTGTATGATCTGTCGATTTCTKGTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATATGTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTCATATAAAATCGTCACGTACACAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5019</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>627038</contig_pos>
        <strand>+</strand>
        <context>CGAAAAAATA[A/T]GTATARTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGTCGATTTCTGGTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATA</left_flank>
        <right_flank>GTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCCACCAGCAGCTCAAGCTTCACAAGAATCCCAAAAAGAGATCGCACATCGCCGGAGAAGGGAGAGCCATCATCAAAGCGCTCCGGTAAGTTCTCAAACCCCAATTCAAAACCATAGCTTTGAAAATGCCAGCTCCATTCNCCGGATTACAAGTATGCTATTTTGGGTATCACCGCAAAATTAAAGTTTTGCCGAACTTTCAGATTTTTTTTTCTTCAGAAATTCCAGATTTTTCGATTGTATGATCTGTCGATTTCTGGTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATATGTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTCATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCACAAAAACGTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCAAGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAATAAAGCTACTGATAACAATATT</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCCACCAGCAGCTCAAGCTTCACAAGAATCCCAAAAAGAGATCGCACATCGCCGGAGAAGGGAGAGCCATCATCAAAGCGCTCCGGTAAGTTCTCAAACCCCAATTCAAAACCATAGCTTTGAAAATGCCAGCTCCATTCNCCGGATTACAAGTATGCTATTTTGGGTATCACCGCAAAATTAAAGTTTTGCCGAACTTTCAGATTTTTTTTTCTTCAGAAATTCCAGATTTTTCGATTGTATGATCTGTCGATTTCTGGTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATAWGTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTCATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCACAAAAACGTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCAAGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAATAAAGCTACTGATAACAATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTGTATGATCTGTCGATTTCT</pcr_primer_p1>
		<pcr_primer_p2>AATTTCAGGAATGCATTATTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATTGTATGATCTGTCGATTTCTGGTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATATGTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTCATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCACAAAAACGTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATT</canonical_amplicon>
		<polymorphic_amplicon>GATTGTATGATCTGTCGATTTCTGGTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATAWGTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTCATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCACAAAAACGTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5020</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>627044</contig_pos>
        <strand>+</strand>
        <context>AATAWGTATA[A/G]TTTCAGGTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTCTGGTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATATGTATA</left_flank>
        <right_flank>TTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCCACCAGCAGCTCAAGCTTCACAAGAATCCCAAAAAGAGATCGCACATCGCCGGAGAAGGGAGAGCCATCATCAAAGCGCTCCGGTAAGTTCTCAAACCCCAATTCAAAACCATAGCTTTGAAAATGCCAGCTCCATTCNCCGGATTACAAGTATGCTATTTTGGGTATCACCGCAAAATTAAAGTTTTGCCGAACTTTCAGATTTTTTTTTCTTCAGAAATTCCAGATTTTTCGATTGTATGATCTGTCGATTTCTGGTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATATGTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTCATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCACAAAAACGTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCAAGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAATAAAGCTACTGATAACAATATTGAAACC</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCCACCAGCAGCTCAAGCTTCACAAGAATCCCAAAAAGAGATCGCACATCGCCGGAGAAGGGAGAGCCATCATCAAAGCGCTCCGGTAAGTTCTCAAACCCCAATTCAAAACCATAGCTTTGAAAATGCCAGCTCCATTCNCCGGATTACAAGTATGCTATTTTGGGTATCACCGCAAAATTAAAGTTTTGCCGAACTTTCAGATTTTTTTTTCTTCAGAAATTCCAGATTTTTCGATTGTATGATCTGTCGATTTCTGGTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATATGTATARTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTCATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCACAAAAACGTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCAAGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAATAAAGCTACTGATAACAATATTGAAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTGTATGATCTGTCGATTTCT</pcr_primer_p1>
		<pcr_primer_p2>AATTTCAGGAATGCATTATTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATTGTATGATCTGTCGATTTCTGGTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATATGTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTCATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCACAAAAACGTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATT</canonical_amplicon>
		<polymorphic_amplicon>GATTGTATGATCTGTCGATTTCTGGTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATATGTATARTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTCATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCACAAAAACGTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5021</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>627093</contig_pos>
        <strand>+</strand>
        <context>AGCGGAAAAG[G/T]CATATAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAG</left_flank>
        <right_flank>CATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCCACCAGCAGCTCAAGCTTCACAAGAATCCCAAAAAGAGATCGCACATCGCCGGAGAAGGGAGAGCCATCATCAAAGCGCTCCGGTAAGTTCTCAAACCCCAATTCAAAACCATAGCTTTGAAAATGCCAGCTCCATTCNCCGGATTACAAGTATGCTATTTTGGGTATCACCGCAAAATTAAAGTTTTGCCGAACTTTCAGATTTTTTTTTCTTCAGAAATTCCAGATTTTTCGATTGTATGATCTGTCGATTTCTGGTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATATGTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTCATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCACAAAAACGTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCAAGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAATAAAGCTACTGATAACAATATTGAAACCTATCAATTTCCCACTGTTTTTATTGTTTTATTTTCACTAAATTTTCCTC</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCCACCAGCAGCTCAAGCTTCACAAGAATCCCAAAAAGAGATCGCACATCGCCGGAGAAGGGAGAGCCATCATCAAAGCGCTCCGGTAAGTTCTCAAACCCCAATTCAAAACCATAGCTTTGAAAATGCCAGCTCCATTCNCCGGATTACAAGTATGCTATTTTGGGTATCACCGCAAAATTAAAGTTTTGCCGAACTTTCAGATTTTTTTTTCTTCAGAAATTCCAGATTTTTCGATTGTATGATCTGTCGATTTCTGGTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATATGTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGKCATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCACAAAAACGTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCAAGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAATAAAGCTACTGATAACAATATTGAAACCTATCAATTTCCCACTGTTTTTATTGTTTTATTTTCACTAAATTTTCCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTGTATGATCTGTCGATTTCT</pcr_primer_p1>
		<pcr_primer_p2>AATTTCAGGAATGCATTATTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATTGTATGATCTGTCGATTTCTGGTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATATGTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTCATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCACAAAAACGTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATT</canonical_amplicon>
		<polymorphic_amplicon>GATTGTATGATCTGTCGATTTCTGGTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATATGTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGKCATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCACAAAAACGTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5022</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>627251</contig_pos>
        <strand>+</strand>
        <context>ATTTAAGGAA[A/C]ATTTTCARRC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAA</left_flank>
        <right_flank>ATTTTCAAGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCAAGCTTCACAAGAATCCCAAAAAGAGATCGCACATCGCCGGAGAAGGGAGAGCCATCATCAAAGCGCTCCGGTAAGTTCTCAAACCCCAATTCAAAACCATAGCTTTGAAAATGCCAGCTCCATTCNCCGGATTACAAGTATGCTATTTTGGGTATCACCGCAAAATTAAAGTTTTGCCGAACTTTCAGATTTTTTTTTCTTCAGAAATTCCAGATTTTTCGATTGTATGATCTGTCGATTTCTGGTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATATGTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTCATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCACAAAAACGTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCAAGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAATAAAGCTACTGATAACAATATTGAAACCTATCAATTTCCCACTGTTTTTATTGTTTTATTTTCACTAAATTTTCCTCCAAATTCCCTCTATTTTCCCCTATTTTTGCCTGAATGTTTCCAATAAATTTCCCCCCACAGTAACCCGATTTCACGTGCCAAAAACGAATATAACAACTAAAAATATTTACAACAGGAGGGCTGCTCGCCGAGCACCTCACCTCCGGCTGTACAAATC</canonical>
            <polymorphic>GCTCAAGCTTCACAAGAATCCCAAAAAGAGATCGCACATCGCCGGAGAAGGGAGAGCCATCATCAAAGCGCTCCGGTAAGTTCTCAAACCCCAATTCAAAACCATAGCTTTGAAAATGCCAGCTCCATTCNCCGGATTACAAGTATGCTATTTTGGGTATCACCGCAAAATTAAAGTTTTGCCGAACTTTCAGATTTTTTTTTCTTCAGAAATTCCAGATTTTTCGATTGTATGATCTGTCGATTTCTGGTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATATGTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTCATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCACAAAAACGTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAAMATTTTCAAGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAATAAAGCTACTGATAACAATATTGAAACCTATCAATTTCCCACTGTTTTTATTGTTTTATTTTCACTAAATTTTCCTCCAAATTCCCTCTATTTTCCCCTATTTTTGCCTGAATGTTTCCAATAAATTTCCCCCCACAGTAACCCGATTTCACGTGCCAAAAACGAATATAACAACTAAAAATATTTACAACAGGAGGGCTGCTCGCCGAGCACCTCACCTCCGGCTGTACAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTAAAAATAAGGTCCCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTCATTTTTCAGGTCCACT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCAAGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAAT</canonical_amplicon>
		<polymorphic_amplicon>GTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAAMATTTTCAAGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5023</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>627259</contig_pos>
        <strand>+</strand>
        <context>AAMATTTTCA[A/G]RCTCCGAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCA</left_flank>
        <right_flank>GCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCACAAGAATCCCAAAAAGAGATCGCACATCGCCGGAGAAGGGAGAGCCATCATCAAAGCGCTCCGGTAAGTTCTCAAACCCCAATTCAAAACCATAGCTTTGAAAATGCCAGCTCCATTCNCCGGATTACAAGTATGCTATTTTGGGTATCACCGCAAAATTAAAGTTTTGCCGAACTTTCAGATTTTTTTTTCTTCAGAAATTCCAGATTTTTCGATTGTATGATCTGTCGATTTCTGGTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATATGTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTCATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCACAAAAACGTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCAAGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAATAAAGCTACTGATAACAATATTGAAACCTATCAATTTCCCACTGTTTTTATTGTTTTATTTTCACTAAATTTTCCTCCAAATTCCCTCTATTTTCCCCTATTTTTGCCTGAATGTTTCCAATAAATTTCCCCCCACAGTAACCCGATTTCACGTGCCAAAAACGAATATAACAACTAAAAATATTTACAACAGGAGGGCTGCTCGCCGAGCACCTCACCTCCGGCTGTACAAATCTTCACACA</canonical>
            <polymorphic>TTCACAAGAATCCCAAAAAGAGATCGCACATCGCCGGAGAAGGGAGAGCCATCATCAAAGCGCTCCGGTAAGTTCTCAAACCCCAATTCAAAACCATAGCTTTGAAAATGCCAGCTCCATTCNCCGGATTACAAGTATGCTATTTTGGGTATCACCGCAAAATTAAAGTTTTGCCGAACTTTCAGATTTTTTTTTCTTCAGAAATTCCAGATTTTTCGATTGTATGATCTGTCGATTTCTGGTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATATGTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTCATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCACAAAAACGTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCARGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAATAAAGCTACTGATAACAATATTGAAACCTATCAATTTCCCACTGTTTTTATTGTTTTATTTTCACTAAATTTTCCTCCAAATTCCCTCTATTTTCCCCTATTTTTGCCTGAATGTTTCCAATAAATTTCCCCCCACAGTAACCCGATTTCACGTGCCAAAAACGAATATAACAACTAAAAATATTTACAACAGGAGGGCTGCTCGCCGAGCACCTCACCTCCGGCTGTACAAATCTTCACACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>387 238 193 99 68 15</canonical_bands>
                <polymorphic_bands>455 238 193 99 15</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>387 193 138 68 55 51 48 26 19 15</canonical_bands>
                <polymorphic_bands>455 193 138 55 51 48 26 19 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTAAAAATAAGGTCCCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTCATTTTTCAGGTCCACT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCAAGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAAT</canonical_amplicon>
		<polymorphic_amplicon>GTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCARGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5024</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>627260</contig_pos>
        <strand>+</strand>
        <context>AMATTTTCAR[A/G]CTCCGAGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCAA</left_flank>
        <right_flank>CTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACAAGAATCCCAAAAAGAGATCGCACATCGCCGGAGAAGGGAGAGCCATCATCAAAGCGCTCCGGTAAGTTCTCAAACCCCAATTCAAAACCATAGCTTTGAAAATGCCAGCTCCATTCNCCGGATTACAAGTATGCTATTTTGGGTATCACCGCAAAATTAAAGTTTTGCCGAACTTTCAGATTTTTTTTTCTTCAGAAATTCCAGATTTTTCGATTGTATGATCTGTCGATTTCTGGTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATATGTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTCATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCACAAAAACGTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCAAGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAATAAAGCTACTGATAACAATATTGAAACCTATCAATTTCCCACTGTTTTTATTGTTTTATTTTCACTAAATTTTCCTCCAAATTCCCTCTATTTTCCCCTATTTTTGCCTGAATGTTTCCAATAAATTTCCCCCCACAGTAACCCGATTTCACGTGCCAAAAACGAATATAACAACTAAAAATATTTACAACAGGAGGGCTGCTCGCCGAGCACCTCACCTCCGGCTGTACAAATCTTCACACAC</canonical>
            <polymorphic>TCACAAGAATCCCAAAAAGAGATCGCACATCGCCGGAGAAGGGAGAGCCATCATCAAAGCGCTCCGGTAAGTTCTCAAACCCCAATTCAAAACCATAGCTTTGAAAATGCCAGCTCCATTCNCCGGATTACAAGTATGCTATTTTGGGTATCACCGCAAAATTAAAGTTTTGCCGAACTTTCAGATTTTTTTTTCTTCAGAAATTCCAGATTTTTCGATTGTATGATCTGTCGATTTCTGGTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATATGTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTCATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCACAAAAACGTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCAARCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAATAAAGCTACTGATAACAATATTGAAACCTATCAATTTCCCACTGTTTTTATTGTTTTATTTTCACTAAATTTTCCTCCAAATTCCCTCTATTTTCCCCTATTTTTGCCTGAATGTTTCCAATAAATTTCCCCCCACAGTAACCCGATTTCACGTGCCAAAAACGAATATAACAACTAAAAATATTTACAACAGGAGGGCTGCTCGCCGAGCACCTCACCTCCGGCTGTACAAATCTTCACACAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>387 239 193 98 68 15</canonical_bands>
                <polymorphic_bands>455 239 193 98 15</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>387 193 138 68 55 51 47 26 20 15</canonical_bands>
                <polymorphic_bands>455 193 138 55 51 47 26 20 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTAAAAATAAGGTCCCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTCATTTTTCAGGTCCACT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCAAGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAAT</canonical_amplicon>
		<polymorphic_amplicon>GTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCAARCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5025</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>627333</contig_pos>
        <strand>+</strand>
        <context>AAGCAGCTGA[A/T]AATTCAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGA</left_flank>
        <right_flank>AATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAAACCCCAATTCAAAACCATAGCTTTGAAAATGCCAGCTCCATTCNCCGGATTACAAGTATGCTATTTTGGGTATCACCGCAAAATTAAAGTTTTGCCGAACTTTCAGATTTTTTTTTCTTCAGAAATTCCAGATTTTTCGATTGTATGATCTGTCGATTTCTGGTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATATGTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTCATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCACAAAAACGTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCAAGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAATAAAGCTACTGATAACAATATTGAAACCTATCAATTTCCCACTGTTTTTATTGTTTTATTTTCACTAAATTTTCCTCCAAATTCCCTCTATTTTCCCCTATTTTTGCCTGAATGTTTCCAATAAATTTCCCCCCACAGTAACCCGATTTCACGTGCCAAAAACGAATATAACAACTAAAAATATTTACAACAGGAGGGCTGCTCGCCGAGCACCTCACCTCCGGCTGTACAAATCTTCACACACTTTGACACCGGTGAAAAGTGGCAAATATTGGAAAAAATAGTTCGAAAAAACGAAACAAAAAAGGTGTCAAAAA</canonical>
            <polymorphic>CTCAAACCCCAATTCAAAACCATAGCTTTGAAAATGCCAGCTCCATTCNCCGGATTACAAGTATGCTATTTTGGGTATCACCGCAAAATTAAAGTTTTGCCGAACTTTCAGATTTTTTTTTCTTCAGAAATTCCAGATTTTTCGATTGTATGATCTGTCGATTTCTGGTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATATGTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTCATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCACAAAAACGTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCAAGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGAWAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAATAAAGCTACTGATAACAATATTGAAACCTATCAATTTCCCACTGTTTTTATTGTTTTATTTTCACTAAATTTTCCTCCAAATTCCCTCTATTTTCCCCTATTTTTGCCTGAATGTTTCCAATAAATTTCCCCCCACAGTAACCCGATTTCACGTGCCAAAAACGAATATAACAACTAAAAATATTTACAACAGGAGGGCTGCTCGCCGAGCACCTCACCTCCGGCTGTACAAATCTTCACACACTTTGACACCGGTGAAAAGTGGCAAATATTGGAAAAAATAGTTCGAAAAAACGAAACAAAAAAGGTGTCAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTAAAAATAAGGTCCCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTCATTTTTCAGGTCCACT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCAAGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAAT</canonical_amplicon>
		<polymorphic_amplicon>GTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCAAGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGAWAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5026</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>627370</contig_pos>
        <strand>+</strand>
        <context>CACCTGAAAA[A/T]ATCAGTGGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAA</left_flank>
        <right_flank>ATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCTCCATTCNCCGGATTACAAGTATGCTATTTTGGGTATCACCGCAAAATTAAAGTTTTGCCGAACTTTCAGATTTTTTTTTCTTCAGAAATTCCAGATTTTTCGATTGTATGATCTGTCGATTTCTGGTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATATGTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTCATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCACAAAAACGTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCAAGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAATAAAGCTACTGATAACAATATTGAAACCTATCAATTTCCCACTGTTTTTATTGTTTTATTTTCACTAAATTTTCCTCCAAATTCCCTCTATTTTCCCCTATTTTTGCCTGAATGTTTCCAATAAATTTCCCCCCACAGTAACCCGATTTCACGTGCCAAAAACGAATATAACAACTAAAAATATTTACAACAGGAGGGCTGCTCGCCGAGCACCTCACCTCCGGCTGTACAAATCTTCACACACTTTGACACCGGTGAAAAGTGGCAAATATTGGAAAAAATAGTTCGAAAAAACGAAACAAAAAAGGTGTCAAAAATCTCGGATTTGATGAAATTTACACCTTTTTCAACTGT</canonical>
            <polymorphic>CAGCTCCATTCNCCGGATTACAAGTATGCTATTTTGGGTATCACCGCAAAATTAAAGTTTTGCCGAACTTTCAGATTTTTTTTTCTTCAGAAATTCCAGATTTTTCGATTGTATGATCTGTCGATTTCTGGTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATATGTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTCATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCACAAAAACGTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCAAGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAAWATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAATAAAGCTACTGATAACAATATTGAAACCTATCAATTTCCCACTGTTTTTATTGTTTTATTTTCACTAAATTTTCCTCCAAATTCCCTCTATTTTCCCCTATTTTTGCCTGAATGTTTCCAATAAATTTCCCCCCACAGTAACCCGATTTCACGTGCCAAAAACGAATATAACAACTAAAAATATTTACAACAGGAGGGCTGCTCGCCGAGCACCTCACCTCCGGCTGTACAAATCTTCACACACTTTGACACCGGTGAAAAGTGGCAAATATTGGAAAAAATAGTTCGAAAAAACGAAACAAAAAAGGTGTCAAAAATCTCGGATTTGATGAAATTTACACCTTTTTCAACTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCTCCACCTGCTCTT</pcr_primer_p1>
		<pcr_primer_p2>AGGTTTCAATATTGTTATCAGTAGC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAATAAAGCTACTGATAACAATATTGAAACCT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAAWATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAATAAAGCTACTGATAACAATATTGAAACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5027</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>627424</contig_pos>
        <strand>+</strand>
        <context>GGCGGGGATT[A/T]AAATGAGTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATT</left_flank>
        <right_flank>AAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTTTTGCCGAACTTTCAGATTTTTTTTTCTTCAGAAATTCCAGATTTTTCGATTGTATGATCTGTCGATTTCTGGTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATATGTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTCATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCACAAAAACGTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCAAGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAATAAAGCTACTGATAACAATATTGAAACCTATCAATTTCCCACTGTTTTTATTGTTTTATTTTCACTAAATTTTCCTCCAAATTCCCTCTATTTTCCCCTATTTTTGCCTGAATGTTTCCAATAAATTTCCCCCCACAGTAACCCGATTTCACGTGCCAAAAACGAATATAACAACTAAAAATATTTACAACAGGAGGGCTGCTCGCCGAGCACCTCACCTCCGGCTGTACAAATCTTCACACACTTTGACACCGGTGAAAAGTGGCAAATATTGGAAAAAATAGTTCGAAAAAACGAAACAAAAAAGGTGTCAAAAATCTCGGATTTGATGAAATTTACACCTTTTTCAACTGTTCGAAATTCAAATTTTTGAAATAAGAAATCTCGCTCTTTTGATAATTTCTTGGC</canonical>
            <polymorphic>AAGTTTTGCCGAACTTTCAGATTTTTTTTTCTTCAGAAATTCCAGATTTTTCGATTGTATGATCTGTCGATTTCTGGTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATATGTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTCATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCACAAAAACGTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCAAGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTWAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAATAAAGCTACTGATAACAATATTGAAACCTATCAATTTCCCACTGTTTTTATTGTTTTATTTTCACTAAATTTTCCTCCAAATTCCCTCTATTTTCCCCTATTTTTGCCTGAATGTTTCCAATAAATTTCCCCCCACAGTAACCCGATTTCACGTGCCAAAAACGAATATAACAACTAAAAATATTTACAACAGGAGGGCTGCTCGCCGAGCACCTCACCTCCGGCTGTACAAATCTTCACACACTTTGACACCGGTGAAAAGTGGCAAATATTGGAAAAAATAGTTCGAAAAAACGAAACAAAAAAGGTGTCAAAAATCTCGGATTTGATGAAATTTACACCTTTTTCAACTGTTCGAAATTCAAATTTTTGAAATAAGAAATCTCGCTCTTTTGATAATTTCTTGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>439 229 179 90 63</canonical_bands>
                <polymorphic_bands>439 242 229 90</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATCATCACATCACCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TGGAGGAAAATTTAGTGAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAATAAAGCTACTGATAACAATATTGAAACCTATCAATTTCCCACTGTTTTTATTGTTTTATTTTCACTAAATTTTCCTCCA</canonical_amplicon>
		<polymorphic_amplicon>AGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTWAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAATAAAGCTACTGATAACAATATTGAAACCTATCAATTTCCCACTGTTTTTATTGTTTTATTTTCACTAAATTTTCCTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5028</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>627505</contig_pos>
        <strand>+</strand>
        <context>TTTATTTCAT[A/T]ATTTTTGCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCAT</left_flank>
        <right_flank>ATTTTTGCGAATAAAGCTACTGATAACAATATTGAAACCTATCAATTTCC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACCGAAAAAGTTCAAAATTTCGAAAAAATATGTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTCATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCACAAAAACGTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCAAGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAATAAAGCTACTGATAACAATATTGAAACCTATCAATTTCCCACTGTTTTTATTGTTTTATTTTCACTAAATTTTCCTCCAAATTCCCTCTATTTTCCCCTATTTTTGCCTGAATGTTTCCAATAAATTTCCCCCCACAGTAACCCGATTTCACGTGCCAAAAACGAATATAACAACTAAAAATATTTACAACAGGAGGGCTGCTCGCCGAGCACCTCACCTCCGGCTGTACAAATCTTCACACACTTTGACACCGGTGAAAAGTGGCAAATATTGGAAAAAATAGTTCGAAAAAACGAAACAAAAAAGGTGTCAAAAATCTCGGATTTGATGAAATTTACACCTTTTTCAACTGTTCGAAATTCAAATTTTTGAAATAAGAAATCTCGCTCTTTTGATAATTTCTTGGCTTTATCAGTAGAGCGCGATTTCTAAAGTTTGCTGCTACCTGAAAAAAACAGGAAAAAATGTCTAAAGTGGCGAATTCGAAG</canonical>
            <polymorphic>TGACCGAAAAAGTTCAAAATTTCGAAAAAATATGTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTCATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCACAAAAACGTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCAAGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATWATTTTTGCGAATAAAGCTACTGATAACAATATTGAAACCTATCAATTTCCCACTGTTTTTATTGTTTTATTTTCACTAAATTTTCCTCCAAATTCCCTCTATTTTCCCCTATTTTTGCCTGAATGTTTCCAATAAATTTCCCCCCACAGTAACCCGATTTCACGTGCCAAAAACGAATATAACAACTAAAAATATTTACAACAGGAGGGCTGCTCGCCGAGCACCTCACCTCCGGCTGTACAAATCTTCACACACTTTGACACCGGTGAAAAGTGGCAAATATTGGAAAAAATAGTTCGAAAAAACGAAACAAAAAAGGTGTCAAAAATCTCGGATTTGATGAAATTTACACCTTTTTCAACTGTTCGAAATTCAAATTTTTGAAATAAGAAATCTCGCTCTTTTGATAATTTCTTGGCTTTATCAGTAGAGCGCGATTTCTAAAGTTTGCTGCTACCTGAAAAAAACAGGAAAAAATGTCTAAAGTGGCGAATTCGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATCATCACATCACCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TGGAGGAAAATTTAGTGAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAATAAAGCTACTGATAACAATATTGAAACCTATCAATTTCCCACTGTTTTTATTGTTTTATTTTCACTAAATTTTCCTCCA</canonical_amplicon>
		<polymorphic_amplicon>AGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATWATTTTTGCGAATAAAGCTACTGATAACAATATTGAAACCTATCAATTTCCCACTGTTTTTATTGTTTTATTTTCACTAAATTTTCCTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5029</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>627518</contig_pos>
        <strand>+</strand>
        <context>TTTTGCGAAT[A/G]AAGCTACTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAAT</left_flank>
        <right_flank>AAGCTACTGATAACAATATTGAAACCTATCAATTTCCCACTGTTTTTATT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAATTTCGAAAAAATATGTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTCATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCACAAAAACGTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCAAGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAATAAAGCTACTGATAACAATATTGAAACCTATCAATTTCCCACTGTTTTTATTGTTTTATTTTCACTAAATTTTCCTCCAAATTCCCTCTATTTTCCCCTATTTTTGCCTGAATGTTTCCAATAAATTTCCCCCCACAGTAACCCGATTTCACGTGCCAAAAACGAATATAACAACTAAAAATATTTACAACAGGAGGGCTGCTCGCCGAGCACCTCACCTCCGGCTGTACAAATCTTCACACACTTTGACACCGGTGAAAAGTGGCAAATATTGGAAAAAATAGTTCGAAAAAACGAAACAAAAAAGGTGTCAAAAATCTCGGATTTGATGAAATTTACACCTTTTTCAACTGTTCGAAATTCAAATTTTTGAAATAAGAAATCTCGCTCTTTTGATAATTTCTTGGCTTTATCAGTAGAGCGCGATTTCTAAAGTTTGCTGCTACCTGAAAAAAACAGGAAAAAATGTCTAAAGTGGCGAATTCGAAGAAATTCAGATCAA</canonical>
            <polymorphic>TCAAAATTTCGAAAAAATATGTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTCATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCACAAAAACGTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCAAGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAATRAAGCTACTGATAACAATATTGAAACCTATCAATTTCCCACTGTTTTTATTGTTTTATTTTCACTAAATTTTCCTCCAAATTCCCTCTATTTTCCCCTATTTTTGCCTGAATGTTTCCAATAAATTTCCCCCCACAGTAACCCGATTTCACGTGCCAAAAACGAATATAACAACTAAAAATATTTACAACAGGAGGGCTGCTCGCCGAGCACCTCACCTCCGGCTGTACAAATCTTCACACACTTTGACACCGGTGAAAAGTGGCAAATATTGGAAAAAATAGTTCGAAAAAACGAAACAAAAAAGGTGTCAAAAATCTCGGATTTGATGAAATTTACACCTTTTTCAACTGTTCGAAATTCAAATTTTTGAAATAAGAAATCTCGCTCTTTTGATAATTTCTTGGCTTTATCAGTAGAGCGCGATTTCTAAAGTTTGCTGCTACCTGAAAAAAACAGGAAAAAATGTCTAAAGTGGCGAATTCGAAGAAATTCAGATCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATCATCACATCACCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TGGAGGAAAATTTAGTGAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAATAAAGCTACTGATAACAATATTGAAACCTATCAATTTCCCACTGTTTTTATTGTTTTATTTTCACTAAATTTTCCTCCA</canonical_amplicon>
		<polymorphic_amplicon>AGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAATRAAGCTACTGATAACAATATTGAAACCTATCAATTTCCCACTGTTTTTATTGTTTTATTTTCACTAAATTTTCCTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5030</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>628906</contig_pos>
        <strand>+</strand>
        <context>TTGCACTTTC[G/T]CTAGATTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTTGTCGTCCAAATCGAAAATCGGTCAAATATAAATTTTTGCACTTTC</left_flank>
        <right_flank>CTAGATTTTGCGTGTTTTTCTTATTATTTATCTCATGACTATCGTGCCGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTTTAATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAAAATCGGTCAAATATAAATTTTTGCACTTTCTCTAGATTTTGCGTGTTTTTCTTATTATTTATCTCATGACTATCGTGCCGCCTTCCTATATATCATCAGTCGACCGCTCAGCTACCGTAGCTCAGCTGGTAGCAACGTGGCACCTCCAAGATTTGTTACACATGTTCAACTCCGCGAAGGGCTTATACCAACGAATTTTCGAGATTTCTTATTTTTAATAAGTTTTGTAAAATTCAAAACTCCAACAACATCTCCTCCCACTCTTCAATTTTCCTTATCTAGATTCCGCGCATCGACCCACAAAAATTTCGAAAAATGTTTCTCAAAAATTTCAAACTTCTCCTCCCGTCCTTGTCCTCAATACCCCAACCTTTCCAAAAAAAAACTGCACAAAAAAGTTGTCTTAAAAGTCGGCGTCTCATTTGTTTCCGAAATTTAGCAGATAAGGATCTCGTACCGCGCCTCGCGCGAGGCGCCGGCGCATTTTTTTTCAGATAACTTTTTTTTATAAACTGAAAAAAAGTCGTCCTT</canonical>
            <polymorphic>ATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTTTAATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAAAATCGGTCAAATATAAATTTTTGCACTTTCKCTAGATTTTGCGTGTTTTTCTTATTATTTATCTCATGACTATCGTGCCGCCTTCCTATATATCATCAGTCGACCGCTCAGCTACCGTAGCTCAGCTGGTAGCAACGTGGCACCTCCAAGATTTGTTACACATGTTCAACTCCGCGAAGGGCTTATACCAACGAATTTTCGAGATTTCTTATTTTTAATAAGTTTTGTAAAATTCAAAACTCCAACAACATCTCCTCCCACTCTTCAATTTTCCTTATCTAGATTCCGCGCATCGACCCACAAAAATTTCGAAAAATGTTTCTCAAAAATTTCAAACTTCTCCTCCCGTCCTTGTCCTCAATACCCCAACCTTTCCAAAAAAAAACTGCACAAAAAAGTTGTCTTAAAAGTCGGCGTCTCATTTGTTTCCGAAATTTAGCAGATAAGGATCTCGTACCGCGCCTCGCGCGAGGCGCCGGCGCATTTTTTTTCAGATAACTTTTTTTTATAAACTGAAAAAAAGTCGTCCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>352 252 135 102 79 47 33</canonical_bands>
                <polymorphic_bands>385 252 135 102 79 47</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 253 247</canonical_bands>
                <polymorphic_bands>747 253</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCATTATTTTGTCGTCCA</pcr_primer_p1>
		<pcr_primer_p2>TGTTGGAGTTTTGAATTTTACA</pcr_primer_p2>
		<pcr_amplicon_size>275</pcr_amplicon_size>
		<canonical_amplicon>ATTTCATTATTTTGTCGTCCAAATCGAAAATCGGTCAAATATAAATTTTTGCACTTTCTCTAGATTTTGCGTGTTTTTCTTATTATTTATCTCATGACTATCGTGCCGCCTTCCTATATATCATCAGTCGACCGCTCAGCTACCGTAGCTCAGCTGGTAGCAACGTGGCACCTCCAAGATTTGTTACACATGTTCAACTCCGCGAAGGGCTTATACCAACGAATTTTCGAGATTTCTTATTTTTAATAAGTTTTGTAAAATTCAAAACTCCAACA</canonical_amplicon>
		<polymorphic_amplicon>ATTTCATTATTTTGTCGTCCAAATCGAAAATCGGTCAAATATAAATTTTTGCACTTTCKCTAGATTTTGCGTGTTTTTCTTATTATTTATCTCATGACTATCGTGCCGCCTTCCTATATATCATCAGTCGACCGCTCAGCTACCGTAGCTCAGCTGGTAGCAACGTGGCACCTCCAAGATTTGTTACACATGTTCAACTCCGCGAAGGGCTTATACCAACGAATTTTCGAGATTTCTTATTTTTAATAAGTTTTGTAAAATTCAAAACTCCAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5031</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>628885</contig_pos>
        <strand>+</strand>
        <context>WAATCGGTCA[A/T]ATATAAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAAAATCGGTCA</left_flank>
        <right_flank>ATATAAATTTTTGCACTTTCTCTAGATTTTGCGTGTTTTTCTTATTATTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTTTAATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAAAATCGGTCAAATATAAATTTTTGCACTTTCTCTAGATTTTGCGTGTTTTTCTTATTATTTATCTCATGACTATCGTGCCGCCTTCCTATATATCATCAGTCGACCGCTCAGCTACCGTAGCTCAGCTGGTAGCAACGTGGCACCTCCAAGATTTGTTACACATGTTCAACTCCGCGAAGGGCTTATACCAACGAATTTTCGAGATTTCTTATTTTTAATAAGTTTTGTAAAATTCAAAACTCCAACAACATCTCCTCCCACTCTTCAATTTTCCTTATCTAGATTCCGCGCATCGACCCACAAAAATTTCGAAAAATGTTTCTCAAAAATTTCAAACTTCTCCTCCCGTCCTTGTCCTCAATACCCCAACCTTTCCAAAAAAAAACTGCACAAAAAAGTTGTCTTAAAAGTCGGCGTCTCATTTGTTTCCGAAATTTAGCAGATAAGGATCTCGTACCGCGCCTCGCGCGAGGCGCCGGCGCATTTTTTTTCAGATAACTTTTTTTTATA</canonical>
            <polymorphic>TTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTTTAATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAAAATCGGTCAWATATAAATTTTTGCACTTTCTCTAGATTTTGCGTGTTTTTCTTATTATTTATCTCATGACTATCGTGCCGCCTTCCTATATATCATCAGTCGACCGCTCAGCTACCGTAGCTCAGCTGGTAGCAACGTGGCACCTCCAAGATTTGTTACACATGTTCAACTCCGCGAAGGGCTTATACCAACGAATTTTCGAGATTTCTTATTTTTAATAAGTTTTGTAAAATTCAAAACTCCAACAACATCTCCTCCCACTCTTCAATTTTCCTTATCTAGATTCCGCGCATCGACCCACAAAAATTTCGAAAAATGTTTCTCAAAAATTTCAAACTTCTCCTCCCGTCCTTGTCCTCAATACCCCAACCTTTCCAAAAAAAAACTGCACAAAAAAGTTGTCTTAAAAGTCGGCGTCTCATTTGTTTCCGAAATTTAGCAGATAAGGATCTCGTACCGCGCCTCGCGCGAGGCGCCGGCGCATTTTTTTTCAGATAACTTTTTTTTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATTTTAGTTATCCGTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>GCACGATAGTCATGAGATAAATAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAAAATCGGTCAAATATAAATTTTTGCACTTTCTCTAGATTTTGCGTGTTTTTCTTATTATTTATCTCATGACTATCGTGC</canonical_amplicon>
		<polymorphic_amplicon>CGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAAAATCGGTCAWATATAAATTTTTGCACTTTCTCTAGATTTTGCGTGTTTTTCTTATTATTTATCTCATGACTATCGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5032</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>628875</contig_pos>
        <strand>+</strand>
        <context>TCCAAATCGA[A/T]AATCGGTCAW</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGA</left_flank>
        <right_flank>AATCGGTCAAATATAAATTTTTGCACTTTCTCTAGATTTTGCGTGTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTTTAATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAAAATCGGTCAAATATAAATTTTTGCACTTTCTCTAGATTTTGCGTGTTTTTCTTATTATTTATCTCATGACTATCGTGCCGCCTTCCTATATATCATCAGTCGACCGCTCAGCTACCGTAGCTCAGCTGGTAGCAACGTGGCACCTCCAAGATTTGTTACACATGTTCAACTCCGCGAAGGGCTTATACCAACGAATTTTCGAGATTTCTTATTTTTAATAAGTTTTGTAAAATTCAAAACTCCAACAACATCTCCTCCCACTCTTCAATTTTCCTTATCTAGATTCCGCGCATCGACCCACAAAAATTTCGAAAAATGTTTCTCAAAAATTTCAAACTTCTCCTCCCGTCCTTGTCCTCAATACCCCAACCTTTCCAAAAAAAAACTGCACAAAAAAGTTGTCTTAAAAGTCGGCGTCTCATTTGTTTCCGAAATTTAGCAGATAAGGATCTCGTACCGCGCCTCGCGCGAGGCGCCGGCGCATTTTTTTTCAGATAACT</canonical>
            <polymorphic>TATATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTTTAATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAWAATCGGTCAAATATAAATTTTTGCACTTTCTCTAGATTTTGCGTGTTTTTCTTATTATTTATCTCATGACTATCGTGCCGCCTTCCTATATATCATCAGTCGACCGCTCAGCTACCGTAGCTCAGCTGGTAGCAACGTGGCACCTCCAAGATTTGTTACACATGTTCAACTCCGCGAAGGGCTTATACCAACGAATTTTCGAGATTTCTTATTTTTAATAAGTTTTGTAAAATTCAAAACTCCAACAACATCTCCTCCCACTCTTCAATTTTCCTTATCTAGATTCCGCGCATCGACCCACAAAAATTTCGAAAAATGTTTCTCAAAAATTTCAAACTTCTCCTCCCGTCCTTGTCCTCAATACCCCAACCTTTCCAAAAAAAAACTGCACAAAAAAGTTGTCTTAAAAGTCGGCGTCTCATTTGTTTCCGAAATTTAGCAGATAAGGATCTCGTACCGCGCCTCGCGCGAGGCGCCGGCGCATTTTTTTTCAGATAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATTTTAGTTATCCGTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>GCACGATAGTCATGAGATAAATAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAAAATCGGTCAAATATAAATTTTTGCACTTTCTCTAGATTTTGCGTGTTTTTCTTATTATTTATCTCATGACTATCGTGC</canonical_amplicon>
		<polymorphic_amplicon>CGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAWAATCGGTCAAATATAAATTTTTGCACTTTCTCTAGATTTTGCGTGTTTTTCTTATTATTTATCTCATGACTATCGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5033</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>628660</contig_pos>
        <strand>+</strand>
        <context>CAAAAATTTT[C/T]AATAGATTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTT</left_flank>
        <right_flank>AATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGAGAAATAGCATCGAAAAACAAATTTTCCTGTACGAGGTGTAAGAGCGAGAGTTTTCTAGTCCGCGAACTTCAATGTTTTTTCTGAAAAAAATCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTTTAATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAAAATCGGTCAAATATAAATTTTTGCACTTTCTCTAGATTTTGCGTGTTTTTCTTATTATTTATCTCATGACTATCGTGCCGCCTTCCTATATATCATCAGTCGACCGCTCAGCTACCGTAGCTCAGCTGGTAGCAACGTGGCACCTCCAAGATTTGTTACACATGTTCAACTCCGCGAAGGGCTTATACCAACGAATTTTCGAGATTTCTTATTTTTAATAAGTTTTGTAAAATTCAAAACTCCAACAACATCTCCTCCCACTCTTCAATTTTCCTTATCTAGATT</canonical>
            <polymorphic>CCGAGAAATAGCATCGAAAAACAAATTTTCCTGTACGAGGTGTAAGAGCGAGAGTTTTCTAGTCCGCGAACTTCAATGTTTTTTCTGAAAAAAATCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTTYAATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAAAATCGGTCAAATATAAATTTTTGCACTTTCTCTAGATTTTGCGTGTTTTTCTTATTATTTATCTCATGACTATCGTGCCGCCTTCCTATATATCATCAGTCGACCGCTCAGCTACCGTAGCTCAGCTGGTAGCAACGTGGCACCTCCAAGATTTGTTACACATGTTCAACTCCGCGAAGGGCTTATACCAACGAATTTTCGAGATTTCTTATTTTTAATAAGTTTTGTAAAATTCAAAACTCCAACAACATCTCCTCCCACTCTTCAATTTTCCTTATCTAGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>409 162 89 79 78 70 24 22 22 21 13 11</canonical_bands>
                <polymorphic_bands>409 162 101 89 78 70 24 22 21 13 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTCTCAAAAATCAGTAAACCTT</pcr_primer_p1>
		<pcr_primer_p2>ATGCCAGACAATGATAATAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTTTAATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCAT</canonical_amplicon>
		<polymorphic_amplicon>AATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTTYAATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5034</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>628585</contig_pos>
        <strand>+</strand>
        <context>AATTTTTAAC[A/G]TCTTTTTTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAAC</left_flank>
        <right_flank>TCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAAAAAAAAGCTAGATTTGGTGTGAAAAACCCGATTTTTTCGCAATAAAACTACAAAAAATTGTTTAAAAAACCGAGAAATAGCATCGAAAAACAAATTTTCCTGTACGAGGTGTAAGAGCGAGAGTTTTCTAGTCCGCGAACTTCAATGTTTTTTCTGAAAAAAATCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTTTAATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAAAATCGGTCAAATATAAATTTTTGCACTTTCTCTAGATTTTGCGTGTTTTTCTTATTATTTATCTCATGACTATCGTGCCGCCTTCCTATATATCATCAGTCGACCGCTCAGCTACCGTAGCTCAGCTGGTAGCAACGTGGCACCTCCAAGATTTGTTACACATGTTCAACTCCGCGAAGGGCTTATACCAACGAATTTTCGAGATTTCTT</canonical>
            <polymorphic>TTTGAAAAAAAAGCTAGATTTGGTGTGAAAAACCCGATTTTTTCGCAATAAAACTACAAAAAATTGTTTAAAAAACCGAGAAATAGCATCGAAAAACAAATTTTCCTGTACGAGGTGTAAGAGCGAGAGTTTTCTAGTCCGCGAACTTCAATGTTTTTTCTGAAAAAAATCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACRTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTTTAATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAAAATCGGTCAAATATAAATTTTTGCACTTTCTCTAGATTTTGCGTGTTTTTCTTATTATTTATCTCATGACTATCGTGCCGCCTTCCTATATATCATCAGTCGACCGCTCAGCTACCGTAGCTCAGCTGGTAGCAACGTGGCACCTCCAAGATTTGTTACACATGTTCAACTCCGCGAAGGGCTTATACCAACGAATTTTCGAGATTTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>498 427 75</canonical_bands>
                <polymorphic_bands>925 75</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCATTTAGAAATTGCGCTCTA</pcr_primer_p1>
		<pcr_primer_p2>AAAATTTTTGGGTTTTATCAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTT</canonical_amplicon>
		<polymorphic_amplicon>ATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACRTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5036</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>628480</contig_pos>
        <strand>+</strand>
        <context>AAATAGTTTT[A/T]AAATTTTGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTT</left_flank>
        <right_flank>AAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGTCTAAAGTGGCGAATTCGAAGAAATTCAGATCAAAATTTTAGAGCTATTTAATGAATTTTTGGCTTTTTATCAGTAGAGCGCAACTTCTAAACTTTAAATTTTTGAAAAAAAAGCTAGATTTGGTGTGAAAAACCCGATTTTTTCGCAATAAAACTACAAAAAATTGTTTAAAAAACCGAGAAATAGCATCGAAAAACAAATTTTCCTGTACGAGGTGTAAGAGCGAGAGTTTTCTAGTCCGCGAACTTCAATGTTTTTTCTGAAAAAAATCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTTTAATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAAAATCGGTCAAATATAAATTTTTGCACTTTCTCTAGATTTTGCGTGTTTTTCTTATTATTTATCTCATGACTATCGTGCCGCCTTCCTATATATCATCAGTCGACC</canonical>
            <polymorphic>AATGTCTAAAGTGGCGAATTCGAAGAAATTCAGATCAAAATTTTAGAGCTATTTAATGAATTTTTGGCTTTTTATCAGTAGAGCGCAACTTCTAAACTTTAAATTTTTGAAAAAAAAGCTAGATTTGGTGTGAAAAACCCGATTTTTTCGCAATAAAACTACAAAAAATTGTTTAAAAAACCGAGAAATAGCATCGAAAAACAAATTTTCCTGTACGAGGTGTAAGAGCGAGAGTTTTCTAGTCCGCGAACTTCAATGTTTTTTCTGAAAAAAATCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTWAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTTTAATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAAAATCGGTCAAATATAAATTTTTGCACTTTCTCTAGATTTTGCGTGTTTTTCTTATTATTTATCTCATGACTATCGTGCCGCCTTCCTATATATCATCAGTCGACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>488 236 100 78 74 13 11</canonical_bands>
                <polymorphic_bands>488 236 100 78 74 24</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>299 169 89 79 78 74 53 46 24 22 22 21 13 11</canonical_bands>
                <polymorphic_bands>299 169 89 79 78 74 53 46 24 24 22 22 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCATTTAGAAATTGCGCTCTA</pcr_primer_p1>
		<pcr_primer_p2>AAAATTTTTGGGTTTTATCAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTT</canonical_amplicon>
		<polymorphic_amplicon>ATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTWAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5037</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>628466</contig_pos>
        <strand>+</strand>
        <context>AGTTTTTCTC[A/T]TTAAAATAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTC</left_flank>
        <right_flank>TTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAACAGGAAAAAATGTCTAAAGTGGCGAATTCGAAGAAATTCAGATCAAAATTTTAGAGCTATTTAATGAATTTTTGGCTTTTTATCAGTAGAGCGCAACTTCTAAACTTTAAATTTTTGAAAAAAAAGCTAGATTTGGTGTGAAAAACCCGATTTTTTCGCAATAAAACTACAAAAAATTGTTTAAAAAACCGAGAAATAGCATCGAAAAACAAATTTTCCTGTACGAGGTGTAAGAGCGAGAGTTTTCTAGTCCGCGAACTTCAATGTTTTTTCTGAAAAAAATCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTTTAATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAAAATCGGTCAAATATAAATTTTTGCACTTTCTCTAGATTTTGCGTGTTTTTCTTATTATTTATCTCATGACTATCGTGCCGCCTTCCTATAT</canonical>
            <polymorphic>AAAAAACAGGAAAAAATGTCTAAAGTGGCGAATTCGAAGAAATTCAGATCAAAATTTTAGAGCTATTTAATGAATTTTTGGCTTTTTATCAGTAGAGCGCAACTTCTAAACTTTAAATTTTTGAAAAAAAAGCTAGATTTGGTGTGAAAAACCCGATTTTTTCGCAATAAAACTACAAAAAATTGTTTAAAAAACCGAGAAATAGCATCGAAAAACAAATTTTCCTGTACGAGGTGTAAGAGCGAGAGTTTTCTAGTCCGCGAACTTCAATGTTTTTTCTGAAAAAAATCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCWTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTTTAATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAAAATCGGTCAAATATAAATTTTTGCACTTTCTCTAGATTTTGCGTGTTTTTCTTATTATTTATCTCATGACTATCGTGCCGCCTTCCTATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>474 236 114 78 74 13 11</canonical_bands>
                <polymorphic_bands>474 236 114 89 74 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCATTTAGAAATTGCGCTCTA</pcr_primer_p1>
		<pcr_primer_p2>AAAATTTTTGGGTTTTATCAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTT</canonical_amplicon>
		<polymorphic_amplicon>ATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCWTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5038</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>628437</contig_pos>
        <strand>+</strand>
        <context>TGATAAACCA[A/G]AAAATTATCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCA</left_flank>
        <right_flank>AAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCGATTTCTAAAGTTTGCTGCTACCTGAAAAAAACAGGAAAAAATGTCTAAAGTGGCGAATTCGAAGAAATTCAGATCAAAATTTTAGAGCTATTTAATGAATTTTTGGCTTTTTATCAGTAGAGCGCAACTTCTAAACTTTAAATTTTTGAAAAAAAAGCTAGATTTGGTGTGAAAAACCCGATTTTTTCGCAATAAAACTACAAAAAATTGTTTAAAAAACCGAGAAATAGCATCGAAAAACAAATTTTCCTGTACGAGGTGTAAGAGCGAGAGTTTTCTAGTCCGCGAACTTCAATGTTTTTTCTGAAAAAAATCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTTTAATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAAAATCGGTCAAATATAAATTTTTGCACTTTCTCTAGATTTTGCGTGTTTTTCTTATTATTTAT</canonical>
            <polymorphic>CGCGATTTCTAAAGTTTGCTGCTACCTGAAAAAAACAGGAAAAAATGTCTAAAGTGGCGAATTCGAAGAAATTCAGATCAAAATTTTAGAGCTATTTAATGAATTTTTGGCTTTTTATCAGTAGAGCGCAACTTCTAAACTTTAAATTTTTGAAAAAAAAGCTAGATTTGGTGTGAAAAACCCGATTTTTTCGCAATAAAACTACAAAAAATTGTTTAAAAAACCGAGAAATAGCATCGAAAAACAAATTTTCCTGTACGAGGTGTAAGAGCGAGAGTTTTCTAGTCCGCGAACTTCAATGTTTTTTCTGAAAAAAATCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCARAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTTTAATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAAAATCGGTCAAATATAAATTTTTGCACTTTCTCTAGATTTTGCGTGTTTTTCTTATTATTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTCTGGAATCAAATCCTAAAT</pcr_primer_p1>
		<pcr_primer_p2>CGACGAAATTTAAACCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCG</canonical_amplicon>
		<polymorphic_amplicon>TCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCARAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5039</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>628389</contig_pos>
        <strand>+</strand>
        <context>ATCATTTTTW[A/T]WAMATTAGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTT</left_flank>
        <right_flank>TAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAAGAAATCTCGCTCTTTTGATAATTTCTTGGCTTTATCAGTAGAGCGCGATTTCTAAAGTTTGCTGCTACCTGAAAAAAACAGGAAAAAATGTCTAAAGTGGCGAATTCGAAGAAATTCAGATCAAAATTTTAGAGCTATTTAATGAATTTTTGGCTTTTTATCAGTAGAGCGCAACTTCTAAACTTTAAATTTTTGAAAAAAAAGCTAGATTTGGTGTGAAAAACCCGATTTTTTCGCAATAAAACTACAAAAAATTGTTTAAAAAACCGAGAAATAGCATCGAAAAACAAATTTTCCTGTACGAGGTGTAAGAGCGAGAGTTTTCTAGTCCGCGAACTTCAATGTTTTTTCTGAAAAAAATCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTTTAATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAAAATCGGTCAAATAT</canonical>
            <polymorphic>AATAAGAAATCTCGCTCTTTTGATAATTTCTTGGCTTTATCAGTAGAGCGCGATTTCTAAAGTTTGCTGCTACCTGAAAAAAACAGGAAAAAATGTCTAAAGTGGCGAATTCGAAGAAATTCAGATCAAAATTTTAGAGCTATTTAATGAATTTTTGGCTTTTTATCAGTAGAGCGCAACTTCTAAACTTTAAATTTTTGAAAAAAAAGCTAGATTTGGTGTGAAAAACCCGATTTTTTCGCAATAAAACTACAAAAAATTGTTTAAAAAACCGAGAAATAGCATCGAAAAACAAATTTTCCTGTACGAGGTGTAAGAGCGAGAGTTTTCTAGTCCGCGAACTTCAATGTTTTTTCTGAAAAAAATCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTWTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTTTAATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAAAATCGGTCAAATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>397 236 191 78 74 13 11</canonical_bands>
                <polymorphic_bands>397 314 191 74 13 11</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>208 169 144 89 79 78 74 46 24 22 22 21 13 11</canonical_bands>
                <polymorphic_bands>208 169 144 102 89 79 74 46 22 22 21 13 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTCTGGAATCAAATCCTAAAT</pcr_primer_p1>
		<pcr_primer_p2>CGACGAAATTTAAACCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCG</canonical_amplicon>
		<polymorphic_amplicon>TCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTWTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5040</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>628388</contig_pos>
        <strand>+</strand>
        <context>TATCATTTTT[A/T]WWAMATTAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTT</left_flank>
        <right_flank>TTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATAAGAAATCTCGCTCTTTTGATAATTTCTTGGCTTTATCAGTAGAGCGCGATTTCTAAAGTTTGCTGCTACCTGAAAAAAACAGGAAAAAATGTCTAAAGTGGCGAATTCGAAGAAATTCAGATCAAAATTTTAGAGCTATTTAATGAATTTTTGGCTTTTTATCAGTAGAGCGCAACTTCTAAACTTTAAATTTTTGAAAAAAAAGCTAGATTTGGTGTGAAAAACCCGATTTTTTCGCAATAAAACTACAAAAAATTGTTTAAAAAACCGAGAAATAGCATCGAAAAACAAATTTTCCTGTACGAGGTGTAAGAGCGAGAGTTTTCTAGTCCGCGAACTTCAATGTTTTTTCTGAAAAAAATCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTTTAATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAAAATCGGTCAAATA</canonical>
            <polymorphic>AAATAAGAAATCTCGCTCTTTTGATAATTTCTTGGCTTTATCAGTAGAGCGCGATTTCTAAAGTTTGCTGCTACCTGAAAAAAACAGGAAAAAATGTCTAAAGTGGCGAATTCGAAGAAATTCAGATCAAAATTTTAGAGCTATTTAATGAATTTTTGGCTTTTTATCAGTAGAGCGCAACTTCTAAACTTTAAATTTTTGAAAAAAAAGCTAGATTTGGTGTGAAAAACCCGATTTTTTCGCAATAAAACTACAAAAAATTGTTTAAAAAACCGAGAAATAGCATCGAAAAACAAATTTTCCTGTACGAGGTGTAAGAGCGAGAGTTTTCTAGTCCGCGAACTTCAATGTTTTTTCTGAAAAAAATCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTWTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTTTAATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAAAATCGGTCAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>396 236 192 78 74 13 11</canonical_bands>
                <polymorphic_bands>396 314 192 74 13 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTCTGGAATCAAATCCTAAAT</pcr_primer_p1>
		<pcr_primer_p2>CGACGAAATTTAAACCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCG</canonical_amplicon>
		<polymorphic_amplicon>TCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTWTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5041</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>628366</contig_pos>
        <strand>+</strand>
        <context>TTCGGTTTTT[A/T]AACACAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTT</left_flank>
        <right_flank>AACACAAAATATATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTTCGAAATTCAAATTTTTGAAATAAGAAATCTCGCTCTTTTGATAATTTCTTGGCTTTATCAGTAGAGCGCGATTTCTAAAGTTTGCTGCTACCTGAAAAAAACAGGAAAAAATGTCTAAAGTGGCGAATTCGAAGAAATTCAGATCAAAATTTTAGAGCTATTTAATGAATTTTTGGCTTTTTATCAGTAGAGCGCAACTTCTAAACTTTAAATTTTTGAAAAAAAAGCTAGATTTGGTGTGAAAAACCCGATTTTTTCGCAATAAAACTACAAAAAATTGTTTAAAAAACCGAGAAATAGCATCGAAAAACAAATTTTCCTGTACGAGGTGTAAGAGCGAGAGTTTTCTAGTCCGCGAACTTCAATGTTTTTTCTGAAAAAAATCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTTTAATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTC</canonical>
            <polymorphic>CTGTTCGAAATTCAAATTTTTGAAATAAGAAATCTCGCTCTTTTGATAATTTCTTGGCTTTATCAGTAGAGCGCGATTTCTAAAGTTTGCTGCTACCTGAAAAAAACAGGAAAAAATGTCTAAAGTGGCGAATTCGAAGAAATTCAGATCAAAATTTTAGAGCTATTTAATGAATTTTTGGCTTTTTATCAGTAGAGCGCAACTTCTAAACTTTAAATTTTTGAAAAAAAAGCTAGATTTGGTGTGAAAAACCCGATTTTTTCGCAATAAAACTACAAAAAATTGTTTAAAAAACCGAGAAATAGCATCGAAAAACAAATTTTCCTGTACGAGGTGTAAGAGCGAGAGTTTTCTAGTCCGCGAACTTCAATGTTTTTTCTGAAAAAAATCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTWAACACAAAATATATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTTTAATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>185 169 167 89 79 78 74 46 24 22 22 21 13 11</canonical_bands>
                <polymorphic_bands>185 169 167 89 79 78 74 46 45 22 22 13 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTTTCCTGTACGAGGTGTA</pcr_primer_p1>
		<pcr_primer_p2>TTATCAGTAGAGCGCAATTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTTTCCTGTACGAGGTGTAAGAGCGAGAGTTTTCTAGTCCGCGAACTTCAATGTTTTTTCTGAAAAAAATCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAA</canonical_amplicon>
		<polymorphic_amplicon>AAATTTTCCTGTACGAGGTGTAAGAGCGAGAGTTTTCTAGTCCGCGAACTTCAATGTTTTTTCTGAAAAAAATCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTWAACACAAAATATATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5042</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>632295</contig_pos>
        <strand></strand>
        <context>tgatcgcaaa[G/T]ttAGTACCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGACAGAGTTTGATTATCTCTTATGGGTATCGAGATAATTGATCGCAAA</left_flank>
        <right_flank>TTAGTACCAGTAGGTTGCTCCATTCATCCCGGAACAGTTGAATCTAGGCA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACCTGAAGTATGCGCACAGTACTGTAATCCGGAAAATGAGACTCTGGGTAGACTGTGGGTATACAGTACTCCATTATCCTTGACCCAACTATCCTTGTGGTGGTCATGTCGAGCCCCAAGGTGCCGTAACCCAAGAAAAAAAAATCTAGCCTATCCCAAGATACCTAAATTGAACCTACCGTAACCTATGGCTGTTGGAAACAGAACCACGGCTTTTTGATTACGGTACTTCTGGAGTTACTAAGATACCGCAAAGCTCATTTCCGAAAGAACGGACGGCATGGTCCCACCTACCTACAGCATGTTCGTGGTCTTGTTTTTGACAGCTGTACCGTAACCCATAAGCACATTTTCTCTTTGAGCTCAATTACAGCGGTTTCTATAAGAGATATAAAAAAACTGTCAACTGACAAAATATTGGTGATATTATGACAAAGAATGTAGCAGTTGACAGAGTTTGATTATCTCTTATGGGTATCGAGATAATTGATCGCAAAGTTAGTACCAGTAGGTTGCTCCATTCATCCCGGAACAGTTGAATCTAGGCAAACCGAGAAAAGATTTGTTCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTTCTAGCTTCCAAAAATAACGAGGCACACCCTATCACCCACTAAAACCCGAAATCTACGTCAACATTCGTCAACGCGCGGGAAGTAAGTCGGATTAGCGA</canonical>
            <polymorphic>TGACCTGAAGTATGCGCACAGTACTGTAATCCGGAAAATGAGACTCTGGGTAGACTGTGGGTATACAGTACTCCATTATCCTTGACCCAACTATCCTTGTGGTGGTCATGTCGAGCCCCAAGGTGCCGTAACCCAAGAAAAAAAAATCTAGCCTATCCCAAGATACCTAAATTGAACCTACCGTAACCTATGGCTGTTGGAAACAGAACCACGGCTTTTTGATTACGGTACTTCTGGAGTTACTAAGATACCGCAAAGCTCATTTCCGAAAGAACGGACGGCATGGTCCCACCTACCTACAGCATGTTCGTGGTCTTGTTTTTGACAGCTGTACCGTAACCCATAAGCACATTTTCTCTTTGAGCTCAATTACAGCGGTTTCTATAAGAGATATAAAAAAACTGTCAACTGACAAAATATTGGTGATATTATGACAAAGAATGTAGCAGTTGACAGAGTTTGATTATCTCTTATGGGTATCGAGATAATTGATCGCAAAKTTAGTACCAGTAGGTTGCTCCATTCATCCCGGAACAGTTGAATCTAGGCAAACCGAGAAAAGATTTGTTCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTTCTAGCTTCCAAAAATAACGAGGCACACCCTATCACCCACTAAAACCCGAAATCTACGTCAACATTCGTCAACGCGCGGGAAGTAAGTCGGATTAGCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTACAGCATGTTCGTGGTCT</pcr_primer_p1>
		<pcr_primer_p2>GTTTGCCTAGATTCAACTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>CTACAGCATGTTCGTGGTCTTGTTTTTGACAGCTGTACCGTAACCCATAAGCACATTTTCTCTTTGAGCTCAATTACAGCGGTTTCTATAAGAGATATAAAAAAACTGTCAACTGACAAAATATTGGTGATATTATGACAAAGAATGTAGCAGTTGACAGAGTTTGATTATCTCTTATGGGTATCGAGATAATTGATCGCAAAGTTAGTACCAGTAGGTTGCTCCATTCATCCCGGAACAGTTGAATCTAGGCAAAC</canonical_amplicon>
		<polymorphic_amplicon>CTACAGCATGTTCGTGGTCTTGTTTTTGACAGCTGTACCGTAACCCATAAGCACATTTTCTCTTTGAGCTCAATTACAGCGGTTTCTATAAGAGATATAAAAAAACTGTCAACTGACAAAATATTGGTGATATTATGACAAAGAATGTAGCAGTTGACAGAGTTTGATTATCTCTTATGGGTATCGAGATAATTGATCGCAAAKTTAGTACCAGTAGGTTGCTCCATTCATCCCGGAACAGTTGAATCTAGGCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5043</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>632445</contig_pos>
        <strand>+</strand>
        <context>AAATCGGACA[A/G]TCCGATTTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACA</left_flank>
        <right_flank>TCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCTATCCCAAGATACCTAAATTGAACCTACCGTAACCTATGGCTGTTGGAAACAGAACCACGGCTTTTTGATTACGGTACTTCTGGAGTTACTAAGATACCGCAAAGCTCATTTCCGAAAGAACGGACGGCATGGTCCCACCTACCTACAGCATGTTCGTGGTCTTGTTTTTGACAGCTGTACCGTAACCCATAAGCACATTTTCTCTTTGAGCTCAATTACAGCGGTTTCTATAAGAGATATAAAAAAACTGTCAACTGACAAAATATTGGTGATATTATGACAAAGAATGTAGCAGTTGACAGAGTTTGATTATCTCTTATGGGTATCGAGATAATTGATCGCAAAGTTAGTACCAGTAGGTTGCTCCATTCATCCCGGAACAGTTGAATCTAGGCAAACCGAGAAAAGATTTGTTCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTTCTAGCTTCCAAAAATAACGAGGCACACCCTATCACCCACTAAAACCCGAAATCTACGTCAACATTCGTCAACGCGCGGGAAGTAAGTCGGATTAGCGAGTTGACATGGAATCGGACATATCCAGATATTCTGATGATATCTGTCAATTCAAGTAGATATGTTTCTTGGTTGTCACCTGCTGGATGTTCTTTTTTCGTGTGGAATCCAGAAAATTTTTCGTAGTAAATTTTGCCAATTTTTTAGTCGTC</canonical>
            <polymorphic>GCCTATCCCAAGATACCTAAATTGAACCTACCGTAACCTATGGCTGTTGGAAACAGAACCACGGCTTTTTGATTACGGTACTTCTGGAGTTACTAAGATACCGCAAAGCTCATTTCCGAAAGAACGGACGGCATGGTCCCACCTACCTACAGCATGTTCGTGGTCTTGTTTTTGACAGCTGTACCGTAACCCATAAGCACATTTTCTCTTTGAGCTCAATTACAGCGGTTTCTATAAGAGATATAAAAAAACTGTCAACTGACAAAATATTGGTGATATTATGACAAAGAATGTAGCAGTTGACAGAGTTTGATTATCTCTTATGGGTATCGAGATAATTGATCGCAAAGTTAGTACCAGTAGGTTGCTCCATTCATCCCGGAACAGTTGAATCTAGGCAAACCGAGAAAAGATTTGTTCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACARTCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTTCTAGCTTCCAAAAATAACGAGGCACACCCTATCACCCACTAAAACCCGAAATCTACGTCAACATTCGTCAACGCGCGGGAAGTAAGTCGGATTAGCGAGTTGACATGGAATCGGACATATCCAGATATTCTGATGATATCTGTCAATTCAAGTAGATATGTTTCTTGGTTGTCACCTGCTGGATGTTCTTTTTTCGTGTGGAATCCAGAAAATTTTTCGTAGTAAATTTTGCCAATTTTTTAGTCGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCGTAGGAATACCAACAAAT</pcr_primer_p1>
		<pcr_primer_p2>AATTCGTGACCAAGGATTTAG</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>TCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATT</canonical_amplicon>
		<polymorphic_amplicon>TCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACARTCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5044</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>632464</contig_pos>
        <strand>+</strand>
        <context>TAACACAAAT[G/T]GAAATAYACC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAAT</left_flank>
        <right_flank>GAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGAACCTACCGTAACCTATGGCTGTTGGAAACAGAACCACGGCTTTTTGATTACGGTACTTCTGGAGTTACTAAGATACCGCAAAGCTCATTTCCGAAAGAACGGACGGCATGGTCCCACCTACCTACAGCATGTTCGTGGTCTTGTTTTTGACAGCTGTACCGTAACCCATAAGCACATTTTCTCTTTGAGCTCAATTACAGCGGTTTCTATAAGAGATATAAAAAAACTGTCAACTGACAAAATATTGGTGATATTATGACAAAGAATGTAGCAGTTGACAGAGTTTGATTATCTCTTATGGGTATCGAGATAATTGATCGCAAAGTTAGTACCAGTAGGTTGCTCCATTCATCCCGGAACAGTTGAATCTAGGCAAACCGAGAAAAGATTTGTTCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTTCTAGCTTCCAAAAATAACGAGGCACACCCTATCACCCACTAAAACCCGAAATCTACGTCAACATTCGTCAACGCGCGGGAAGTAAGTCGGATTAGCGAGTTGACATGGAATCGGACATATCCAGATATTCTGATGATATCTGTCAATTCAAGTAGATATGTTTCTTGGTTGTCACCTGCTGGATGTTCTTTTTTCGTGTGGAATCCAGAAAATTTTTCGTAGTAAATTTTGCCAATTTTTTAGTCGTCAGTTATTTTCACCTGCCCT</canonical>
            <polymorphic>AATTGAACCTACCGTAACCTATGGCTGTTGGAAACAGAACCACGGCTTTTTGATTACGGTACTTCTGGAGTTACTAAGATACCGCAAAGCTCATTTCCGAAAGAACGGACGGCATGGTCCCACCTACCTACAGCATGTTCGTGGTCTTGTTTTTGACAGCTGTACCGTAACCCATAAGCACATTTTCTCTTTGAGCTCAATTACAGCGGTTTCTATAAGAGATATAAAAAAACTGTCAACTGACAAAATATTGGTGATATTATGACAAAGAATGTAGCAGTTGACAGAGTTTGATTATCTCTTATGGGTATCGAGATAATTGATCGCAAAGTTAGTACCAGTAGGTTGCTCCATTCATCCCGGAACAGTTGAATCTAGGCAAACCGAGAAAAGATTTGTTCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATKGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTTCTAGCTTCCAAAAATAACGAGGCACACCCTATCACCCACTAAAACCCGAAATCTACGTCAACATTCGTCAACGCGCGGGAAGTAAGTCGGATTAGCGAGTTGACATGGAATCGGACATATCCAGATATTCTGATGATATCTGTCAATTCAAGTAGATATGTTTCTTGGTTGTCACCTGCTGGATGTTCTTTTTTCGTGTGGAATCCAGAAAATTTTTCGTAGTAAATTTTGCCAATTTTTTAGTCGTCAGTTATTTTCACCTGCCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCGTAGGAATACCAACAAAT</pcr_primer_p1>
		<pcr_primer_p2>AATTCGTGACCAAGGATTTAG</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>TCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATT</canonical_amplicon>
		<polymorphic_amplicon>TCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATKGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5045</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>632471</contig_pos>
        <strand>+</strand>
        <context>AATKGAAATA[C/T]ACCTAATTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATA</left_flank>
        <right_flank>ACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTACCGTAACCTATGGCTGTTGGAAACAGAACCACGGCTTTTTGATTACGGTACTTCTGGAGTTACTAAGATACCGCAAAGCTCATTTCCGAAAGAACGGACGGCATGGTCCCACCTACCTACAGCATGTTCGTGGTCTTGTTTTTGACAGCTGTACCGTAACCCATAAGCACATTTTCTCTTTGAGCTCAATTACAGCGGTTTCTATAAGAGATATAAAAAAACTGTCAACTGACAAAATATTGGTGATATTATGACAAAGAATGTAGCAGTTGACAGAGTTTGATTATCTCTTATGGGTATCGAGATAATTGATCGCAAAGTTAGTACCAGTAGGTTGCTCCATTCATCCCGGAACAGTTGAATCTAGGCAAACCGAGAAAAGATTTGTTCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTTCTAGCTTCCAAAAATAACGAGGCACACCCTATCACCCACTAAAACCCGAAATCTACGTCAACATTCGTCAACGCGCGGGAAGTAAGTCGGATTAGCGAGTTGACATGGAATCGGACATATCCAGATATTCTGATGATATCTGTCAATTCAAGTAGATATGTTTCTTGGTTGTCACCTGCTGGATGTTCTTTTTTCGTGTGGAATCCAGAAAATTTTTCGTAGTAAATTTTGCCAATTTTTTAGTCGTCAGTTATTTTCACCTGCCCTTTGTCAG</canonical>
            <polymorphic>CCTACCGTAACCTATGGCTGTTGGAAACAGAACCACGGCTTTTTGATTACGGTACTTCTGGAGTTACTAAGATACCGCAAAGCTCATTTCCGAAAGAACGGACGGCATGGTCCCACCTACCTACAGCATGTTCGTGGTCTTGTTTTTGACAGCTGTACCGTAACCCATAAGCACATTTTCTCTTTGAGCTCAATTACAGCGGTTTCTATAAGAGATATAAAAAAACTGTCAACTGACAAAATATTGGTGATATTATGACAAAGAATGTAGCAGTTGACAGAGTTTGATTATCTCTTATGGGTATCGAGATAATTGATCGCAAAGTTAGTACCAGTAGGTTGCTCCATTCATCCCGGAACAGTTGAATCTAGGCAAACCGAGAAAAGATTTGTTCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATAYACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTTCTAGCTTCCAAAAATAACGAGGCACACCCTATCACCCACTAAAACCCGAAATCTACGTCAACATTCGTCAACGCGCGGGAAGTAAGTCGGATTAGCGAGTTGACATGGAATCGGACATATCCAGATATTCTGATGATATCTGTCAATTCAAGTAGATATGTTTCTTGGTTGTCACCTGCTGGATGTTCTTTTTTCGTGTGGAATCCAGAAAATTTTTCGTAGTAAATTTTGCCAATTTTTTAGTCGTCAGTTATTTTCACCTGCCCTTTGTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCGTAGGAATACCAACAAAT</pcr_primer_p1>
		<pcr_primer_p2>AATTCGTGACCAAGGATTTAG</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>TCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATT</canonical_amplicon>
		<polymorphic_amplicon>TCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATAYACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5046</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>632647</contig_pos>
        <strand></strand>
        <context>GGGAACGGAC[T/C]YCCCAACTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGAC</left_flank>
        <right_flank>CCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTCTTTGAGCTCAATTACAGCGGTTTCTATAAGAGATATAAAAAAACTGTCAACTGACAAAATATTGGTGATATTATGACAAAGAATGTAGCAGTTGACAGAGTTTGATTATCTCTTATGGGTATCGAGATAATTGATCGCAAAGTTAGTACCAGTAGGTTGCTCCATTCATCCCGGAACAGTTGAATCTAGGCAAACCGAGAAAAGATTTGTTCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTTCTAGCTTCCAAAAATAACGAGGCACACCCTATCACCCACTAAAACCCGAAATCTACGTCAACATTCGTCAACGCGCGGGAAGTAAGTCGGATTAGCGAGTTGACATGGAATCGGACATATCCAGATATTCTGATGATATCTGTCAATTCAAGTAGATATGTTTCTTGGTTGTCACCTGCTGGATGTTCTTTTTTCGTGTGGAATCCAGAAAATTTTTCGTAGTAAATTTTGCCAATTTTTTAGTCGTCAGTTATTTTCACCTGCCCTTTGTCAGTTGTTAAATCGATGTAGATGTTGGTAGGGGGAAGTTTTGGTTTTGTCTGCAAAAGTTAATTATAAGTCTTGTTAAGCTAATTGCGTCTAAGAGCCAATAAGATCGTTCTGACATACTGTAAAAACTGTCATGGAAAGATCCTCACGCTGTCAACTGAAGTTTGAGCTCAATTGTCT</canonical>
            <polymorphic>TTTCTCTTTGAGCTCAATTACAGCGGTTTCTATAAGAGATATAAAAAAACTGTCAACTGACAAAATATTGGTGATATTATGACAAAGAATGTAGCAGTTGACAGAGTTTGATTATCTCTTATGGGTATCGAGATAATTGATCGCAAAGTTAGTACCAGTAGGTTGCTCCATTCATCCCGGAACAGTTGAATCTAGGCAAACCGAGAAAAGATTTGTTCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACYCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTTCTAGCTTCCAAAAATAACGAGGCACACCCTATCACCCACTAAAACCCGAAATCTACGTCAACATTCGTCAACGCGCGGGAAGTAAGTCGGATTAGCGAGTTGACATGGAATCGGACATATCCAGATATTCTGATGATATCTGTCAATTCAAGTAGATATGTTTCTTGGTTGTCACCTGCTGGATGTTCTTTTTTCGTGTGGAATCCAGAAAATTTTTCGTAGTAAATTTTGCCAATTTTTTAGTCGTCAGTTATTTTCACCTGCCCTTTGTCAGTTGTTAAATCGATGTAGATGTTGGTAGGGGGAAGTTTTGGTTTTGTCTGCAAAAGTTAATTATAAGTCTTGTTAAGCTAATTGCGTCTAAGAGCCAATAAGATCGTTCTGACATACTGTAAAAACTGTCATGGAAAGATCCTCACGCTGTCAACTGAAGTTTGAGCTCAATTGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>309 249 188 161 93</canonical_bands>
                <polymorphic_bands>470 249 188 93</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCGTAGGAATACCAACAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGCTAGAAGGATGGACTAGGA</pcr_primer_p2>
		<pcr_amplicon_size>340</pcr_amplicon_size>
		<canonical_amplicon>TCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTTCTAGCT</canonical_amplicon>
		<polymorphic_amplicon>TCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACYCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTTCTAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5047</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>632660</contig_pos>
        <strand>+</strand>
        <context>CCAACTTAAG[C/T]GCCTAAATCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAG</left_flank>
        <right_flank>GCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTTCTAGCTTCCAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAATTACAGCGGTTTCTATAAGAGATATAAAAAAACTGTCAACTGACAAAATATTGGTGATATTATGACAAAGAATGTAGCAGTTGACAGAGTTTGATTATCTCTTATGGGTATCGAGATAATTGATCGCAAAGTTAGTACCAGTAGGTTGCTCCATTCATCCCGGAACAGTTGAATCTAGGCAAACCGAGAAAAGATTTGTTCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTTCTAGCTTCCAAAAATAACGAGGCACACCCTATCACCCACTAAAACCCGAAATCTACGTCAACATTCGTCAACGCGCGGGAAGTAAGTCGGATTAGCGAGTTGACATGGAATCGGACATATCCAGATATTCTGATGATATCTGTCAATTCAAGTAGATATGTTTCTTGGTTGTCACCTGCTGGATGTTCTTTTTTCGTGTGGAATCCAGAAAATTTTTCGTAGTAAATTTTGCCAATTTTTTAGTCGTCAGTTATTTTCACCTGCCCTTTGTCAGTTGTTAAATCGATGTAGATGTTGGTAGGGGGAAGTTTTGGTTTTGTCTGCAAAAGTTAATTATAAGTCTTGTTAAGCTAATTGCGTCTAAGAGCCAATAAGATCGTTCTGACATACTGTAAAAACTGTCATGGAAAGATCCTCACGCTGTCAACTGAAGTTTGAGCTCAATTGTCTCAACCTAACTCTG</canonical>
            <polymorphic>TCAATTACAGCGGTTTCTATAAGAGATATAAAAAAACTGTCAACTGACAAAATATTGGTGATATTATGACAAAGAATGTAGCAGTTGACAGAGTTTGATTATCTCTTATGGGTATCGAGATAATTGATCGCAAAGTTAGTACCAGTAGGTTGCTCCATTCATCCCGGAACAGTTGAATCTAGGCAAACCGAGAAAAGATTTGTTCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGYGCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTTCTAGCTTCCAAAAATAACGAGGCACACCCTATCACCCACTAAAACCCGAAATCTACGTCAACATTCGTCAACGCGCGGGAAGTAAGTCGGATTAGCGAGTTGACATGGAATCGGACATATCCAGATATTCTGATGATATCTGTCAATTCAAGTAGATATGTTTCTTGGTTGTCACCTGCTGGATGTTCTTTTTTCGTGTGGAATCCAGAAAATTTTTCGTAGTAAATTTTGCCAATTTTTTAGTCGTCAGTTATTTTCACCTGCCCTTTGTCAGTTGTTAAATCGATGTAGATGTTGGTAGGGGGAAGTTTTGGTTTTGTCTGCAAAAGTTAATTATAAGTCTTGTTAAGCTAATTGCGTCTAAGAGCCAATAAGATCGTTCTGACATACTGTAAAAACTGTCATGGAAAGATCCTCACGCTGTCAACTGAAGTTTGAGCTCAATTGTCTCAACCTAACTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>186 169 159 136 60 59 52 45 44 34 24 16 8 4 2 2</canonical_bands>
                <polymorphic_bands>186 185 159 136 60 59 52 45 44 34 24 8 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCGTAGGAATACCAACAA</pcr_primer_p1>
		<pcr_primer_p2>TTATTTTTGGAAGCTAGAAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>352</pcr_amplicon_size>
		<canonical_amplicon>TTCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTTCTAGCTTCCAAAAATAA</canonical_amplicon>
		<polymorphic_amplicon>TTCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGYGCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTTCTAGCTTCCAAAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5048</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>632723</contig_pos>
        <strand>+</strand>
        <context>AACGAGGCAC[A/C]CCCTATCACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGTCACGAATTCCTAGTCCATCCTTCTAGCTTCCAAAAATAACGAGGCAC</left_flank>
        <right_flank>CCCTATCACCCACTAAAACCCGAAATCTACGTCAACATTCGTCAACGCGC</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATGACAAAGAATGTAGCAGTTGACAGAGTTTGATTATCTCTTATGGGTATCGAGATAATTGATCGCAAAGTTAGTACCAGTAGGTTGCTCCATTCATCCCGGAACAGTTGAATCTAGGCAAACCGAGAAAAGATTTGTTCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTTCTAGCTTCCAAAAATAACGAGGCACACCCTATCACCCACTAAAACCCGAAATCTACGTCAACATTCGTCAACGCGCGGGAAGTAAGTCGGATTAGCGAGTTGACATGGAATCGGACATATCCAGATATTCTGATGATATCTGTCAATTCAAGTAGATATGTTTCTTGGTTGTCACCTGCTGGATGTTCTTTTTTCGTGTGGAATCCAGAAAATTTTTCGTAGTAAATTTTGCCAATTTTTTAGTCGTCAGTTATTTTCACCTGCCCTTTGTCAGTTGTTAAATCGATGTAGATGTTGGTAGGGGGAAGTTTTGGTTTTGTCTGCAAAAGTTAATTATAAGTCTTGTTAAGCTAATTGCGTCTAAGAGCCAATAAGATCGTTCTGACATACTGTAAAAACTGTCATGGAAAGATCCTCACGCTGTCAACTGAAGTTTGAGCTCAATTGTCTCAACCTAACTCTGTTTTACAACCTTTGGACTAAAACTCGGCATTCAAACATAATTGAATTAGGTATAGTTTTGAAG</canonical>
            <polymorphic>TTATGACAAAGAATGTAGCAGTTGACAGAGTTTGATTATCTCTTATGGGTATCGAGATAATTGATCGCAAAGTTAGTACCAGTAGGTTGCTCCATTCATCCCGGAACAGTTGAATCTAGGCAAACCGAGAAAAGATTTGTTCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTTCTAGCTTCCAAAAATAACGAGGCACMCCCTATCACCCACTAAAACCCGAAATCTACGTCAACATTCGTCAACGCGCGGGAAGTAAGTCGGATTAGCGAGTTGACATGGAATCGGACATATCCAGATATTCTGATGATATCTGTCAATTCAAGTAGATATGTTTCTTGGTTGTCACCTGCTGGATGTTCTTTTTTCGTGTGGAATCCAGAAAATTTTTCGTAGTAAATTTTGCCAATTTTTTAGTCGTCAGTTATTTTCACCTGCCCTTTGTCAGTTGTTAAATCGATGTAGATGTTGGTAGGGGGAAGTTTTGGTTTTGTCTGCAAAAGTTAATTATAAGTCTTGTTAAGCTAATTGCGTCTAAGAGCCAATAAGATCGTTCTGACATACTGTAAAAACTGTCATGGAAAGATCCTCACGCTGTCAACTGAAGTTTGAGCTCAATTGTCTCAACCTAACTCTGTTTTACAACCTTTGGACTAAAACTCGGCATTCAAACATAATTGAATTAGGTATAGTTTTGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>183 169 159 136 108 59 52 44 34 24 16 8 4 2 2</canonical_bands>
                <polymorphic_bands>183 169 159 136 108 59 52 44 34 24 16 10 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCGTAGGAATACCAACAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTCGCTAATCCGACTTACTTC</pcr_primer_p2>
		<pcr_amplicon_size>433</pcr_amplicon_size>
		<canonical_amplicon>TCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTTCTAGCTTCCAAAAATAACGAGGCACACCCTATCACCCACTAAAACCCGAAATCTACGTCAACATTCGTCAACGCGCGGGAAGTAAGTCGGATTAGCGAG</canonical_amplicon>
		<polymorphic_amplicon>TCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTTCTAGCTTCCAAAAATAACGAGGCACMCCCTATCACCCACTAAAACCCGAAATCTACGTCAACATTCGTCAACGCGCGGGAAGTAAGTCGGATTAGCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5049</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>632735</contig_pos>
        <strand>+</strand>
        <context>CCTATCACCC[A/C]CTAAAACCCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTAGTCCATCCTTCTAGCTTCCAAAAATAACGAGGCACACCCTATCACCC</left_flank>
        <right_flank>CTAAAACCCGAAATCTACGTCAACATTCGTCAACGCGCGGGAAGTAAGTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTAGCAGTTGACAGAGTTTGATTATCTCTTATGGGTATCGAGATAATTGATCGCAAAGTTAGTACCAGTAGGTTGCTCCATTCATCCCGGAACAGTTGAATCTAGGCAAACCGAGAAAAGATTTGTTCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTTCTAGCTTCCAAAAATAACGAGGCACACCCTATCACCCACTAAAACCCGAAATCTACGTCAACATTCGTCAACGCGCGGGAAGTAAGTCGGATTAGCGAGTTGACATGGAATCGGACATATCCAGATATTCTGATGATATCTGTCAATTCAAGTAGATATGTTTCTTGGTTGTCACCTGCTGGATGTTCTTTTTTCGTGTGGAATCCAGAAAATTTTTCGTAGTAAATTTTGCCAATTTTTTAGTCGTCAGTTATTTTCACCTGCCCTTTGTCAGTTGTTAAATCGATGTAGATGTTGGTAGGGGGAAGTTTTGGTTTTGTCTGCAAAAGTTAATTATAAGTCTTGTTAAGCTAATTGCGTCTAAGAGCCAATAAGATCGTTCTGACATACTGTAAAAACTGTCATGGAAAGATCCTCACGCTGTCAACTGAAGTTTGAGCTCAATTGTCTCAACCTAACTCTGTTTTACAACCTTTGGACTAAAACTCGGCATTCAAACATAATTGAATTAGGTATAGTTTTGAAGGTCTTGTTAAGT</canonical>
            <polymorphic>ATGTAGCAGTTGACAGAGTTTGATTATCTCTTATGGGTATCGAGATAATTGATCGCAAAGTTAGTACCAGTAGGTTGCTCCATTCATCCCGGAACAGTTGAATCTAGGCAAACCGAGAAAAGATTTGTTCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTTCTAGCTTCCAAAAATAACGAGGCACACCCTATCACCCMCTAAAACCCGAAATCTACGTCAACATTCGTCAACGCGCGGGAAGTAAGTCGGATTAGCGAGTTGACATGGAATCGGACATATCCAGATATTCTGATGATATCTGTCAATTCAAGTAGATATGTTTCTTGGTTGTCACCTGCTGGATGTTCTTTTTTCGTGTGGAATCCAGAAAATTTTTCGTAGTAAATTTTGCCAATTTTTTAGTCGTCAGTTATTTTCACCTGCCCTTTGTCAGTTGTTAAATCGATGTAGATGTTGGTAGGGGGAAGTTTTGGTTTTGTCTGCAAAAGTTAATTATAAGTCTTGTTAAGCTAATTGCGTCTAAGAGCCAATAAGATCGTTCTGACATACTGTAAAAACTGTCATGGAAAGATCCTCACGCTGTCAACTGAAGTTTGAGCTCAATTGTCTCAACCTAACTCTGTTTTACAACCTTTGGACTAAAACTCGGCATTCAAACATAATTGAATTAGGTATAGTTTTGAAGGTCTTGTTAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>171 169 159 136 120 59 52 44 34 24 16 8 4 2 2</canonical_bands>
                <polymorphic_bands>171 169 159 140 120 59 52 44 34 24 16 8 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCCTAGTCCATCCTTCTAGC</pcr_primer_p1>
		<pcr_primer_p2>AAATTGGCAAAATTTACTACGA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>ATTCCTAGTCCATCCTTCTAGCTTCCAAAAATAACGAGGCACACCCTATCACCCACTAAAACCCGAAATCTACGTCAACATTCGTCAACGCGCGGGAAGTAAGTCGGATTAGCGAGTTGACATGGAATCGGACATATCCAGATATTCTGATGATATCTGTCAATTCAAGTAGATATGTTTCTTGGTTGTCACCTGCTGGATGTTCTTTTTTCGTGTGGAATCCAGAAAATTTTTCGTAGTAAATTTTGCCAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATTCCTAGTCCATCCTTCTAGCTTCCAAAAATAACGAGGCACACCCTATCACCCMCTAAAACCCGAAATCTACGTCAACATTCGTCAACGCGCGGGAAGTAAGTCGGATTAGCGAGTTGACATGGAATCGGACATATCCAGATATTCTGATGATATCTGTCAATTCAAGTAGATATGTTTCTTGGTTGTCACCTGCTGGATGTTCTTTTTTCGTGTGGAATCCAGAAAATTTTTCGTAGTAAATTTTGCCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5050</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>637165</contig_pos>
        <strand>+</strand>
        <context>AGTCTTCACG[G/T]CACCCCTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGTTTCTAGGTCATTGATAAGGTGTGATCTCAGAGATAGAAGTCTTCACG</left_flank>
        <right_flank>CACCCCTTTGGGACCCTCTAGACCATCTTGTGATGATTCTGGTGTCTAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATGTACCCCTTCTCTTACTTCACCCCCCCCCCCCCCTCCCTAATCCATGTCAATCCACGGATTGCCCCCTAGAATTAAGGGCCTTGATCTTCTTTCCCACCCGGTTTTACGTAGATTCTAAAATTCCCCATTTCCGTCATAAAAACTCTCAAAAATAGAAATCAGACTTAAATCAAGTTTACGGAATTCTCCAGAAAACATTTTTTGTGATAGATTTCGAGAGAGCAGACAATCAGACAGCAATCGGCCTAAAATGGGGAGGAGTCGAAAGAAGAGAAGAAAGAAGAAGAATATGGAATATCTATAATTCCTGTATGGATAACATGAAGATGAATATATTTATTTGGATTTCATTTCAAATGTGAATGTGACTCTTGAGATCTCACGTCTTCCGAATTCTTCCAATTCTGAAATGAAGGACTCCCATTTCTAGTTCTACTCTTCTAGGGTTTCTAGGTCATTGATAAGGTGTGATCTCAGAGATAGAAGTCTTCACGTCACCCCTTTGGGACCCTCTAGACCATCTTGTGATGATTCTGGTGTCTAGACACTAATTGTTATGGCTCCACCTACATGAAAACGTGCATAGTGTCTTTGCTTTTAAACGCTAACAATCCAATTCAGTTATTATTCTTCTTGTTTTCTGACAGATACCCCTCCTAGTGATCCTCACAGTACTCCAACTTCCAGAAAAAATGCTCTCCAATTCCTCATCCTCCTCATCCAACTCTTCATCCAACGACTCGTCTTCATCGCTCTCCGCCGGGAGTCCACCAAAGGGAAGCTTGTCTCCAGATGGTGGTGCTCAGCGCTTCTTCAGCCAAGGAAAGCGGATTCCAAAAGGTAAGCCCCGGGTAAAAAAGGGGTGGGTTCTTTTAAGCAGATGGAGACAGAGCAAGGCTGTAGAGAGCAGAACCGGTCGCAGCCCGGGTCGTGGGGGGGGGGGGGTACCGTGGAGCAAGTTGTCAATTCATTCAGGATTCAAGGACAGTAGGATT</canonical>
            <polymorphic>ACATGTACCCCTTCTCTTACTTCACCCCCCCCCCCCCCTCCCTAATCCATGTCAATCCACGGATTGCCCCCTAGAATTAAGGGCCTTGATCTTCTTTCCCACCCGGTTTTACGTAGATTCTAAAATTCCCCATTTCCGTCATAAAAACTCTCAAAAATAGAAATCAGACTTAAATCAAGTTTACGGAATTCTCCAGAAAACATTTTTTGTGATAGATTTCGAGAGAGCAGACAATCAGACAGCAATCGGCCTAAAATGGGGAGGAGTCGAAAGAAGAGAAGAAAGAAGAAGAATATGGAATATCTATAATTCCTGTATGGATAACATGAAGATGAATATATTTATTTGGATTTCATTTCAAATGTGAATGTGACTCTTGAGATCTCACGTCTTCCGAATTCTTCCAATTCTGAAATGAAGGACTCCCATTTCTAGTTCTACTCTTCTAGGGTTTCTAGGTCATTGATAAGGTGTGATCTCAGAGATAGAAGTCTTCACGKCACCCCTTTGGGACCCTCTAGACCATCTTGTGATGATTCTGGTGTCTAGACACTAATTGTTATGGCTCCACCTACATGAAAACGTGCATAGTGTCTTTGCTTTTAAACGCTAACAATCCAATTCAGTTATTATTCTTCTTGTTTTCTGACAGATACCCCTCCTAGTGATCCTCACAGTACTCCAACTTCCAGAAAAAATGCTCTCCAATTCCTCATCCTCCTCATCCAACTCTTCATCCAACGACTCGTCTTCATCGCTCTCCGCCGGGAGTCCACCAAAGGGAAGCTTGTCTCCAGATGGTGGTGCTCAGCGCTTCTTCAGCCAAGGAAAGCGGATTCCAAAAGGTAAGCCCCGGGTAAAAAAGGGGTGGGTTCTTTTAAGCAGATGGAGACAGAGCAAGGCTGTAGAGAGCAGAACCGGTCGCAGCCCGGGTCGTGGGGGGGGGGGGGTACCGTGGAGCAAGTTGTCAATTCATTCAGGATTCAAGGACAGTAGGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>418 276 111 110 85</canonical_bands>
                <polymorphic_bands>418 276 195 111</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 369 129</canonical_bands>
                <polymorphic_bands>631 369</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>502 369 129</canonical_bands>
                <polymorphic_bands>631 369</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGTGAATGTGACTCTTGAGAT</pcr_primer_p1>
		<pcr_primer_p2>CGTTTAAAAGCAAAGACACTATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATGTGAATGTGACTCTTGAGATCTCACGTCTTCCGAATTCTTCCAATTCTGAAATGAAGGACTCCCATTTCTAGTTCTACTCTTCTAGGGTTTCTAGGTCATTGATAAGGTGTGATCTCAGAGATAGAAGTCTTCACGTCACCCCTTTGGGACCCTCTAGACCATCTTGTGATGATTCTGGTGTCTAGACACTAATTGTTATGGCTCCACCTACATGAAAACGTGCATAGTGTCTTTGCTTTTAAACG</canonical_amplicon>
		<polymorphic_amplicon>AATGTGAATGTGACTCTTGAGATCTCACGTCTTCCGAATTCTTCCAATTCTGAAATGAAGGACTCCCATTTCTAGTTCTACTCTTCTAGGGTTTCTAGGTCATTGATAAGGTGTGATCTCAGAGATAGAAGTCTTCACGKCACCCCTTTGGGACCCTCTAGACCATCTTGTGATGATTCTGGTGTCTAGACACTAATTGTTATGGCTCCACCTACATGAAAACGTGCATAGTGTCTTTGCTTTTAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5051</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>636938</contig_pos>
        <strand>+</strand>
        <context>GGAGTCGAAA[A/G]AAGAGAAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGAGCAGACAATCAGACAGCAATCGGCCTAAAATGGGGAGGAGTCGAAA</left_flank>
        <right_flank>AAGAGAAGAAAGAAGAAGAATATGGAATATCTATAATTCCTGTATGGATA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTATTAAGATATATGGGTTCGAAGTTGACTGTTAGAATTTTTACGGTAGGTTCCAGCCCCCTTTATATGCGGTCAAAGTTGGGGTTCGAACTATTCCTATCTGGAACTACATTCAGCTCCCCCAGACTTTTAGTTCAAATCCGTTGGACGATAGTAACATTTATTTCACCTTCTCCACTTTTTGAACTCATAACCTAAATCATACGAATCAGCTAACTATTAGAAACATGTACCCCTTCTCTTACTTCACCCCCCCCCCCCCCTCCCTAATCCATGTCAATCCACGGATTGCCCCCTAGAATTAAGGGCCTTGATCTTCTTTCCCACCCGGTTTTACGTAGATTCTAAAATTCCCCATTTCCGTCATAAAAACTCTCAAAAATAGAAATCAGACTTAAATCAAGTTTACGGAATTCTCCAGAAAACATTTTTTGTGATAGATTTCGAGAGAGCAGACAATCAGACAGCAATCGGCCTAAAATGGGGAGGAGTCGAAAGAAGAGAAGAAAGAAGAAGAATATGGAATATCTATAATTCCTGTATGGATAACATGAAGATGAATATATTTATTTGGATTTCATTTCAAATGTGAATGTGACTCTTGAGATCTCACGTCTTCCGAATTCTTCCAATTCTGAAATGAAGGACTCCCATTTCTAGTTCTACTCTTCTAGGGTTTCTAGGTCATTGATAAGGTGTGATCTCAGAGATAGAAGTCTTCACGTCACCCCTTTGGGACCCTCTAGACCATCTTGTGATGATTCTGGTGTCTAGACACTAATTGTTATGGCTCCACCTACATGAAAACGTGCATAGTGTCTTTGCTTTTAAACGCTAACAATCCAATTCAGTTATTATTCTTCTTGTTTTCTGACAGATACCCCTCCTAGTGATCCTCACAGTACTCCAACTTCCAGAAAAAATGCTCTCCAATTCCTCATCCTCCTCATCCAACTCTTCATCCAACGACTCGTCTTCATCGCTCTCCGCCGGGAGTC</canonical>
            <polymorphic>AGGTATTAAGATATATGGGTTCGAAGTTGACTGTTAGAATTTTTACGGTAGGTTCCAGCCCCCTTTATATGCGGTCAAAGTTGGGGTTCGAACTATTCCTATCTGGAACTACATTCAGCTCCCCCAGACTTTTAGTTCAAATCCGTTGGACGATAGTAACATTTATTTCACCTTCTCCACTTTTTGAACTCATAACCTAAATCATACGAATCAGCTAACTATTAGAAACATGTACCCCTTCTCTTACTTCACCCCCCCCCCCCCCTCCCTAATCCATGTCAATCCACGGATTGCCCCCTAGAATTAAGGGCCTTGATCTTCTTTCCCACCCGGTTTTACGTAGATTCTAAAATTCCCCATTTCCGTCATAAAAACTCTCAAAAATAGAAATCAGACTTAAATCAAGTTTACGGAATTCTCCAGAAAACATTTTTTGTGATAGATTTCGAGAGAGCAGACAATCAGACAGCAATCGGCCTAAAATGGGGAGGAGTCGAAARAAGAGAAGAAAGAAGAAGAATATGGAATATCTATAATTCCTGTATGGATAACATGAAGATGAATATATTTATTTGGATTTCATTTCAAATGTGAATGTGACTCTTGAGATCTCACGTCTTCCGAATTCTTCCAATTCTGAAATGAAGGACTCCCATTTCTAGTTCTACTCTTCTAGGGTTTCTAGGTCATTGATAAGGTGTGATCTCAGAGATAGAAGTCTTCACGTCACCCCTTTGGGACCCTCTAGACCATCTTGTGATGATTCTGGTGTCTAGACACTAATTGTTATGGCTCCACCTACATGAAAACGTGCATAGTGTCTTTGCTTTTAAACGCTAACAATCCAATTCAGTTATTATTCTTCTTGTTTTCTGACAGATACCCCTCCTAGTGATCCTCACAGTACTCCAACTTCCAGAAAAAATGCTCTCCAATTCCTCATCCTCCTCATCCAACTCTTCATCCAACGACTCGTCTTCATCGCTCTCCGCCGGGAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTCATAAAAACTCTCAAAAATAG</pcr_primer_p1>
		<pcr_primer_p2>GAGATCTCAAGAGTCACATTCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTCATAAAAACTCTCAAAAATAGAAATCAGACTTAAATCAAGTTTACGGAATTCTCCAGAAAACATTTTTTGTGATAGATTTCGAGAGAGCAGACAATCAGACAGCAATCGGCCTAAAATGGGGAGGAGTCGAAAGAAGAGAAGAAAGAAGAAGAATATGGAATATCTATAATTCCTGTATGGATAACATGAAGATGAATATATTTATTTGGATTTCATTTCAAATGTGAATGTGACTCTTGAGATCTC</canonical_amplicon>
		<polymorphic_amplicon>CGTCATAAAAACTCTCAAAAATAGAAATCAGACTTAAATCAAGTTTACGGAATTCTCCAGAAAACATTTTTTGTGATAGATTTCGAGAGAGCAGACAATCAGACAGCAATCGGCCTAAAATGGGGAGGAGTCGAAARAAGAGAAGAAAGAAGAAGAATATGGAATATCTATAATTCCTGTATGGATAACATGAAGATGAATATATTTATTTGGATTTCATTTCAAATGTGAATGTGACTCTTGAGATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5052</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>688560</contig_pos>
        <strand>+</strand>
        <context>AAGSTTTTTT[C/T]GACTAAGWCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTT</left_flank>
        <right_flank>GACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCGGATCTTGCCAATGACTCCCCGAGACATGAACGCTTTCCTAAACCAAATGGTATCACTTTTTGAAGAAGCTTCTCATCCCTTATGAATCTTTCTGGATCGAATTTCTCTGGATGTTCAAAAACTGTTTCATTGACATGAAGAGCGCTCAATTGAGCCGTCACCAGTGCTCCGGAATCCACCATATGCCCTCCCATATAGGTTGGCTCATTGTTCCATCTCCAGAAGTTGACATTTAGAATCGAAGCGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCT</canonical>
            <polymorphic>GTTCGGATCTTGCCAATGACTCCCCGAGACATGAACGCTTTCCTAAACCAAATGGTATCACTTTTTGAAGAAGCTTCTCATCCCTTATGAATCTTTCTGGATCGAATTTCTCTGGATGTTCAAAAACTGTTTCATTGACATGAAGAGCGCTCAATTGAGCCGTCACCAGTGCTCCGGAATCCACCATATGCCCTCCCATATAGGTTGGCTCATTGTTCCATCTCCAGAAGTTGACATTTAGAATCGAAGCGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTYGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>157 142 126 117 103 101 98 97 30 29</canonical_bands>
                <polymorphic_bands>258 142 126 117 103 98 97 30 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATCCACAAGTCCAAAATCAT</pcr_primer_p1>
		<pcr_primer_p2>TCTTTATTGAAAGGTGAGATACG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGA</canonical_amplicon>
		<polymorphic_amplicon>TAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTYGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5053</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>688568</contig_pos>
        <strand>+</strand>
        <context>TTYGACTAAG[A/T]CTTCAAGTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAG</left_flank>
        <right_flank>CTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTGCCAATGACTCCCCGAGACATGAACGCTTTCCTAAACCAAATGGTATCACTTTTTGAAGAAGCTTCTCATCCCTTATGAATCTTTCTGGATCGAATTTCTCTGGATGTTCAAAAACTGTTTCATTGACATGAAGAGCGCTCAATTGAGCCGTCACCAGTGCTCCGGAATCCACCATATGCCCTCCCATATAGGTTGGCTCATTGTTCCATCTCCAGAAGTTGACATTTAGAATCGAAGCGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGT</canonical>
            <polymorphic>CTTGCCAATGACTCCCCGAGACATGAACGCTTTCCTAAACCAAATGGTATCACTTTTTGAAGAAGCTTCTCATCCCTTATGAATCTTTCTGGATCGAATTTCTCTGGATGTTCAAAAACTGTTTCATTGACATGAAGAGCGCTCAATTGAGCCGTCACCAGTGCTCCGGAATCCACCATATGCCCTCCCATATAGGTTGGCTCATTGTTCCATCTCCAGAAGTTGACATTTAGAATCGAAGCGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGWCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNGTC</site>
                <isoschizomers>
                    <enzyme>AspI</enzyme>
                    <enzyme>PflFI</enzyme>
                    <enzyme>PsyI</enzyme>
                    <enzyme>TelI</enzyme>
                    <enzyme>Tth111I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATCCACAAGTCCAAAATCAT</pcr_primer_p1>
		<pcr_primer_p2>TCTTTATTGAAAGGTGAGATACG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGA</canonical_amplicon>
		<polymorphic_amplicon>TAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGWCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5054</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>688635</contig_pos>
        <strand>+</strand>
        <context>AAAACGCATC[A/G]GTATAGTCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATC</left_flank>
        <right_flank>GTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCATCCCTTATGAATCTTTCTGGATCGAATTTCTCTGGATGTTCAAAAACTGTTTCATTGACATGAAGAGCGCTCAATTGAGCCGTCACCAGTGCTCCGGAATCCACCATATGCCCTCCCATATAGGTTGGCTCATTGTTCCATCTCCAGAAGTTGACATTTAGAATCGAAGCGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTA</canonical>
            <polymorphic>TCTCATCCCTTATGAATCTTTCTGGATCGAATTTCTCTGGATGTTCAAAAACTGTTTCATTGACATGAAGAGCGCTCAATTGAGCCGTCACCAGTGCTCCGGAATCCACCATATGCCCTCCCATATAGGTTGGCTCATTGTTCCATCTCCAGAAGTTGACATTTAGAATCGAAGCGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCRGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATCCACAAGTCCAAAATCAT</pcr_primer_p1>
		<pcr_primer_p2>TCTTTATTGAAAGGTGAGATACG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGA</canonical_amplicon>
		<polymorphic_amplicon>TAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCRGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5055</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>688664</contig_pos>
        <strand>+</strand>
        <context>TTCTCATCGA[C/T]CACATACCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGA</left_flank>
        <right_flank>CACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTCTCTGGATGTTCAAAAACTGTTTCATTGACATGAAGAGCGCTCAATTGAGCCGTCACCAGTGCTCCGGAATCCACCATATGCCCTCCCATATAGGTTGGCTCATTGTTCCATCTCCAGAAGTTGACATTTAGAATCGAAGCGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATT</canonical>
            <polymorphic>AATTTCTCTGGATGTTCAAAAACTGTTTCATTGACATGAAGAGCGCTCAATTGAGCCGTCACCAGTGCTCCGGAATCCACCATATGCCCTCCCATATAGGTTGGCTCATTGTTCCATCTCCAGAAGTTGACATTTAGAATCGAAGCGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGAYCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>496 474 30</canonical_bands>
                <polymorphic_bands>526 474</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>308 278 219 174 21</canonical_bands>
                <polymorphic_bands>308 299 219 174</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATCCACAAGTCCAAAATCAT</pcr_primer_p1>
		<pcr_primer_p2>TCTTTATTGAAAGGTGAGATACG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGA</canonical_amplicon>
		<polymorphic_amplicon>TAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGAYCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5056</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>688708</contig_pos>
        <strand>+</strand>
        <context>GAAAAAAATT[A/C]TTTTGAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATT</left_flank>
        <right_flank>TTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCAATTGAGCCGTCACCAGTGCTCCGGAATCCACCATATGCCCTCCCATATAGGTTGGCTCATTGTTCCATCTCCAGAAGTTGACATTTAGAATCGAAGCGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTC</canonical>
            <polymorphic>GCTCAATTGAGCCGTCACCAGTGCTCCGGAATCCACCATATGCCCTCCCATATAGGTTGGCTCATTGTTCCATCTCCAGAAGTTGACATTTAGAATCGAAGCGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTMTTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTCTTGGAAGTTGTTCTCATC</pcr_primer_p1>
		<pcr_primer_p2>ACATTTTCTCCATTTGATATGAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGT</canonical_amplicon>
		<polymorphic_amplicon>TAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTMTTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5057</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>688725</contig_pos>
        <strand>+</strand>
        <context>ATTTCTGATA[A/G]CGTATCTCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATA</left_flank>
        <right_flank>CGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGTGCTCCGGAATCCACCATATGCCCTCCCATATAGGTTGGCTCATTGTTCCATCTCCAGAAGTTGACATTTAGAATCGAAGCGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTG</canonical>
            <polymorphic>CCAGTGCTCCGGAATCCACCATATGCCCTCCCATATAGGTTGGCTCATTGTTCCATCTCCAGAAGTTGACATTTAGAATCGAAGCGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATARCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTCTTGGAAGTTGTTCTCATC</pcr_primer_p1>
		<pcr_primer_p2>ACATTTTCTCCATTTGATATGAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGT</canonical_amplicon>
		<polymorphic_amplicon>TAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATARCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5058</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>693126</contig_pos>
        <strand>+</strand>
        <context>ATATAAACAG[A/T]AGGAAGAGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAG</left_flank>
        <right_flank>AGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAAAAAACGCTCCATTGCTAATTGATCCGTTTCAGGAGCAAGAATGGCCGGCCGGACGCTGAAAAGAATCATGACCTGAATTCTGCTTGCCACGTGAAATTACGTTGTTTGAAGACCGAGAAAACCATCGTTAAGACGTATCATATGGATTTTGGAGAGGGGCAAGCTGGAATTAAAGCTCATGACTTGATGGATCGAACTGTTTTTCGTCAGGATATCGCTCCATATGTATCCTACTCGGTGAACAAAAAGAAGAGATGGGAAATGGTGGAAAATGATAAAATTGAAATTCTTGGAGAGGTTCAAAAACTATATGATGATATGGAGGTATTGATTCTTGATCGAGTTCAATTTAGATGTCCAACATTTATTTGTAAGATTTTAAATTTTTAAAATTTTCAGTCATTTTAATTTTTTCAGCTGGCCGCTAT</canonical>
            <polymorphic>CTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGWAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAAAAAACGCTCCATTGCTAATTGATCCGTTTCAGGAGCAAGAATGGCCGGCCGGACGCTGAAAAGAATCATGACCTGAATTCTGCTTGCCACGTGAAATTACGTTGTTTGAAGACCGAGAAAACCATCGTTAAGACGTATCATATGGATTTTGGAGAGGGGCAAGCTGGAATTAAAGCTCATGACTTGATGGATCGAACTGTTTTTCGTCAGGATATCGCTCCATATGTATCCTACTCGGTGAACAAAAAGAAGAGATGGGAAATGGTGGAAAATGATAAAATTGAAATTCTTGGAGAGGTTCAAAAACTATATGATGATATGGAGGTATTGATTCTTGATCGAGTTCAATTTAGATGTCCAACATTTATTTGTAAGATTTTAAATTTTTAAAATTTTCAGTCATTTTAATTTTTTCAGCTGGCCGCTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>498 272 230</canonical_bands>
                <polymorphic_bands>770 230</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACATTTTTCTCCGTTATCA</pcr_primer_p1>
		<pcr_primer_p2>TTAACAAGACTCACCAGAAATAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAA</canonical_amplicon>
		<polymorphic_amplicon>AAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGWAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5059</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>693080</contig_pos>
        <strand>+</strand>
        <context>CAAACGCAAA[C/T]AGTGACGTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAA</left_flank>
        <right_flank>AGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAAAAAACGCTCCATTGCTAATTGATCCGTTTCAGGAGCAAGAATGGCCGGCCGGACGCTGAAAAGAATCATGACCTGAATTCTGCTTGCCACGTGAAATTACGTTGTTTGAAGACCGAGAAAACCATCGTTAAGACGTATCATATGGATTTTGGAGAGGGGCAAGCTGGAATTAAAGCTCATGACTTGATGGATCGAACTGTTTTTCGTCAGGATATCGCTCCATATGTATCCTACTCGGTGAACAAAAAGAAGAGATGGGAAATGGTGGAAAATGATAAAATTGAAATTCTTGGAGAGGTTCAAAAACTATATGATGATATGGAGGTATTGATTCTTGATCGAGTTCAATTTAGATGTCCAACATTTATTTGTAAGATTTTAA</canonical>
            <polymorphic>ATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAAYAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAAAAAACGCTCCATTGCTAATTGATCCGTTTCAGGAGCAAGAATGGCCGGCCGGACGCTGAAAAGAATCATGACCTGAATTCTGCTTGCCACGTGAAATTACGTTGTTTGAAGACCGAGAAAACCATCGTTAAGACGTATCATATGGATTTTGGAGAGGGGCAAGCTGGAATTAAAGCTCATGACTTGATGGATCGAACTGTTTTTCGTCAGGATATCGCTCCATATGTATCCTACTCGGTGAACAAAAAGAAGAGATGGGAAATGGTGGAAAATGATAAAATTGAAATTCTTGGAGAGGTTCAAAAACTATATGATGATATGGAGGTATTGATTCTTGATCGAGTTCAATTTAGATGTCCAACATTTATTTGTAAGATTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACATTTTTCTCCGTTATCA</pcr_primer_p1>
		<pcr_primer_p2>TTAACAAGACTCACCAGAAATAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAA</canonical_amplicon>
		<polymorphic_amplicon>AAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAAYAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5060</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>692999</contig_pos>
        <strand>+</strand>
        <context>TTGTRTGTAT[C/G]CTAATGTTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTAT</left_flank>
        <right_flank>CTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTCTTCGGATTTCAATTTTCAGTGGATAATTCTCATTATGTTCATTACTGGAGTCATCACTTCTTCATGCTGGATTCTTATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAAAAAACGCTCCATTGCTAATTGATCCGTTTCAGGAGCAAGAATGGCCGGCCGGACGCTGAAAAGAATCATGACCTGAATTCTGCTTGCCACGTGAAATTACGTTGTTTGAAGACCGAGAAAACCATCGTTAAGACGTATCATATGGATTTTGGAGAGGGGCAAGCTGGAATTAAAGCTCATGACTTGATGGATCGAACTGTTTTTCGTCAGGATATCGCTCCATATGTATCCTACTCGGTGAACAAAAAGAAGAGATGGGAAATGGTGGAAAATGATAAAATTGAAATTCTTGGAGAGGTTC</canonical>
            <polymorphic>AAGTCTTCGGATTTCAATTTTCAGTGGATAATTCTCATTATGTTCATTACTGGAGTCATCACTTCTTCATGCTGGATTCTTATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATSCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAAAAAACGCTCCATTGCTAATTGATCCGTTTCAGGAGCAAGAATGGCCGGCCGGACGCTGAAAAGAATCATGACCTGAATTCTGCTTGCCACGTGAAATTACGTTGTTTGAAGACCGAGAAAACCATCGTTAAGACGTATCATATGGATTTTGGAGAGGGGCAAGCTGGAATTAAAGCTCATGACTTGATGGATCGAACTGTTTTTCGTCAGGATATCGCTCCATATGTATCCTACTCGGTGAACAAAAAGAAGAGATGGGAAATGGTGGAAAATGATAAAATTGAAATTCTTGGAGAGGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAACATTTTTCTCCGTTAT</pcr_primer_p1>
		<pcr_primer_p2>TTAACAAGACTCACCAGAAATAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAA</canonical_amplicon>
		<polymorphic_amplicon>CAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATSCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5061</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>692993</contig_pos>
        <strand>+</strand>
        <context>TTTKGATTGT[A/G]TGTATSCTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGT</left_flank>
        <right_flank>TGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTAAGTCTTCGGATTTCAATTTTCAGTGGATAATTCTCATTATGTTCATTACTGGAGTCATCACTTCTTCATGCTGGATTCTTATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAAAAAACGCTCCATTGCTAATTGATCCGTTTCAGGAGCAAGAATGGCCGGCCGGACGCTGAAAAGAATCATGACCTGAATTCTGCTTGCCACGTGAAATTACGTTGTTTGAAGACCGAGAAAACCATCGTTAAGACGTATCATATGGATTTTGGAGAGGGGCAAGCTGGAATTAAAGCTCATGACTTGATGGATCGAACTGTTTTTCGTCAGGATATCGCTCCATATGTATCCTACTCGGTGAACAAAAAGAAGAGATGGGAAATGGTGGAAAATGATAAAATTGAAATTCTTGGAG</canonical>
            <polymorphic>ATTTTTAAGTCTTCGGATTTCAATTTTCAGTGGATAATTCTCATTATGTTCATTACTGGAGTCATCACTTCTTCATGCTGGATTCTTATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTRTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAAAAAACGCTCCATTGCTAATTGATCCGTTTCAGGAGCAAGAATGGCCGGCCGGACGCTGAAAAGAATCATGACCTGAATTCTGCTTGCCACGTGAAATTACGTTGTTTGAAGACCGAGAAAACCATCGTTAAGACGTATCATATGGATTTTGGAGAGGGGCAAGCTGGAATTAAAGCTCATGACTTGATGGATCGAACTGTTTTTCGTCAGGATATCGCTCCATATGTATCCTACTCGGTGAACAAAAAGAAGAGATGGGAAATGGTGGAAAATGATAAAATTGAAATTCTTGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>147 101 100 92 79 63 60 51 39 36 35 32 29 28 28 27 23 16 5 4 3 2</canonical_bands>
                <polymorphic_bands>147 101 100 92 79 63 60 54 51 39 36 35 32 28 28 27 16 5 4 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCTAACGATCATACACCCTAC</pcr_primer_p1>
		<pcr_primer_p2>CTGTTTATATACCCTTGTGGTGA</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>AGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAG</canonical_amplicon>
		<polymorphic_amplicon>AGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTRTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5062</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>692986</contig_pos>
        <strand>+</strand>
        <context>TTTCCAGTTT[G/T]GATTGTRTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTT</left_flank>
        <right_flank>GATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCAT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAATCATTTTTAAGTCTTCGGATTTCAATTTTCAGTGGATAATTCTCATTATGTTCATTACTGGAGTCATCACTTCTTCATGCTGGATTCTTATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAAAAAACGCTCCATTGCTAATTGATCCGTTTCAGGAGCAAGAATGGCCGGCCGGACGCTGAAAAGAATCATGACCTGAATTCTGCTTGCCACGTGAAATTACGTTGTTTGAAGACCGAGAAAACCATCGTTAAGACGTATCATATGGATTTTGGAGAGGGGCAAGCTGGAATTAAAGCTCATGACTTGATGGATCGAACTGTTTTTCGTCAGGATATCGCTCCATATGTATCCTACTCGGTGAACAAAAAGAAGAGATGGGAAATGGTGGAAAATGATAAAATTGAAATT</canonical>
            <polymorphic>TATAATCATTTTTAAGTCTTCGGATTTCAATTTTCAGTGGATAATTCTCATTATGTTCATTACTGGAGTCATCACTTCTTCATGCTGGATTCTTATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTKGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAAAAAACGCTCCATTGCTAATTGATCCGTTTCAGGAGCAAGAATGGCCGGCCGGACGCTGAAAAGAATCATGACCTGAATTCTGCTTGCCACGTGAAATTACGTTGTTTGAAGACCGAGAAAACCATCGTTAAGACGTATCATATGGATTTTGGAGAGGGGCAAGCTGGAATTAAAGCTCATGACTTGATGGATCGAACTGTTTTTCGTCAGGATATCGCTCCATATGTATCCTACTCGGTGAACAAAAAGAAGAGATGGGAAATGGTGGAAAATGATAAAATTGAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTAACGATCATACACCCTAC</pcr_primer_p1>
		<pcr_primer_p2>CTGTTTATATACCCTTGTGGTGA</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>AGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAG</canonical_amplicon>
		<polymorphic_amplicon>AGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTKGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5063</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>692971</contig_pos>
        <strand>+</strand>
        <context>TCCGTTATCA[C/T]GCTCTTTCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCA</left_flank>
        <right_flank>GCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAGAGAGGTTTGACTATAATCATTTTTAAGTCTTCGGATTTCAATTTTCAGTGGATAATTCTCATTATGTTCATTACTGGAGTCATCACTTCTTCATGCTGGATTCTTATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAAAAAACGCTCCATTGCTAATTGATCCGTTTCAGGAGCAAGAATGGCCGGCCGGACGCTGAAAAGAATCATGACCTGAATTCTGCTTGCCACGTGAAATTACGTTGTTTGAAGACCGAGAAAACCATCGTTAAGACGTATCATATGGATTTTGGAGAGGGGCAAGCTGGAATTAAAGCTCATGACTTGATGGATCGAACTGTTTTTCGTCAGGATATCGCTCCATATGTATCCTACTCGGTGAACAAAAAGAAGAGATGGGAAATGGTGGAAAAT</canonical>
            <polymorphic>TTAGAGAGGTTTGACTATAATCATTTTTAAGTCTTCGGATTTCAATTTTCAGTGGATAATTCTCATTATGTTCATTACTGGAGTCATCACTTCTTCATGCTGGATTCTTATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCAYGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAAAAAACGCTCCATTGCTAATTGATCCGTTTCAGGAGCAAGAATGGCCGGCCGGACGCTGAAAAGAATCATGACCTGAATTCTGCTTGCCACGTGAAATTACGTTGTTTGAAGACCGAGAAAACCATCGTTAAGACGTATCATATGGATTTTGGAGAGGGGCAAGCTGGAATTAAAGCTCATGACTTGATGGATCGAACTGTTTTTCGTCAGGATATCGCTCCATATGTATCCTACTCGGTGAACAAAAAGAAGAGATGGGAAATGGTGGAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>147 101 100 92 79 63 60 54 51 39 36 35 29 28 27 23 16 6 5 4 3 2</canonical_bands>
                <polymorphic_bands>147 101 100 92 86 79 60 54 51 39 36 35 29 28 27 16 6 5 4 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAAATATAGTTCAAGGATTTCTTA</pcr_primer_p1>
		<pcr_primer_p2>AGTGAAAAGATGATAAAGGAACA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACT</canonical_amplicon>
		<polymorphic_amplicon>CTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCAYGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5064</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>692872</contig_pos>
        <strand></strand>
        <context>TTCATAAAAT[T/C]TCTTGTCTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAAT</left_flank>
        <right_flank>TCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACC</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCCCTGCTCGATCGAAAAAGATGGGAATGTTACAATTTGTATGATAGAATCAATTGAAAAACTAGATGCGCAAAGCGCTCCATCTTTCGTCTTCGAGTTTAGAGAGGTTTGACTATAATCATTTTTAAGTCTTCGGATTTCAATTTTCAGTGGATAATTCTCATTATGTTCATTACTGGAGTCATCACTTCTTCATGCTGGATTCTTATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAAAAAACGCTCCATTGCTAATTGATCCGTTTCAGGAGCAAGAATGGCCGGCCGGACGCTGAAAAGAATCATGACCTGAATTCTGCTTGCCACGTGAAATTACGTTGTTTGAAGACCGAGAAAACCATCGTTAAGACGTATCATATGGATTTTGGAGAGGGGCAAGCTGGAATTAAA</canonical>
            <polymorphic>GTCCCTGCTCGATCGAAAAAGATGGGAATGTTACAATTTGTATGATAGAATCAATTGAAAAACTAGATGCGCAAAGCGCTCCATCTTTCGTCTTCGAGTTTAGAGAGGTTTGACTATAATCATTTTTAAGTCTTCGGATTTCAATTTTCAGTGGATAATTCTCATTATGTTCATTACTGGAGTCATCACTTCTTCATGCTGGATTCTTATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATYTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAAAAAACGCTCCATTGCTAATTGATCCGTTTCAGGAGCAAGAATGGCCGGCCGGACGCTGAAAAGAATCATGACCTGAATTCTGCTTGCCACGTGAAATTACGTTGTTTGAAGACCGAGAAAACCATCGTTAAGACGTATCATATGGATTTTGGAGAGGGGCAAGCTGGAATTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>476 304 101 99 20</canonical_bands>
                <polymorphic_bands>476 324 101 99</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>304 150 149 90 73 59 42 34 21 20 19 18 14 7</canonical_bands>
                <polymorphic_bands>324 150 149 90 73 59 42 34 21 19 18 14 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAAATATAGTTCAAGGATTTCTTA</pcr_primer_p1>
		<pcr_primer_p2>AGTGAAAAGATGATAAAGGAACA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACT</canonical_amplicon>
		<polymorphic_amplicon>CTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATYTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5065</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>692842</contig_pos>
        <strand>+</strand>
        <context>AGATATATAC[C/T]GCYAAAAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATAC</left_flank>
        <right_flank>GCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCTGAGAGATATAACCGAAATATGGATAGTCCCTGCTCGATCGAAAAAGATGGGAATGTTACAATTTGTATGATAGAATCAATTGAAAAACTAGATGCGCAAAGCGCTCCATCTTTCGTCTTCGAGTTTAGAGAGGTTTGACTATAATCATTTTTAAGTCTTCGGATTTCAATTTTCAGTGGATAATTCTCATTATGTTCATTACTGGAGTCATCACTTCTTCATGCTGGATTCTTATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAAAAAACGCTCCATTGCTAATTGATCCGTTTCAGGAGCAAGAATGGCCGGCCGGACGCTGAAAAGAATCATGACCTGAATTCTGCTTGCCACGTGAAATTACGTTGTTTGAAGACCGAGAAAACCATCGTTAAGACGTATCATATG</canonical>
            <polymorphic>TTCCTGAGAGATATAACCGAAATATGGATAGTCCCTGCTCGATCGAAAAAGATGGGAATGTTACAATTTGTATGATAGAATCAATTGAAAAACTAGATGCGCAAAGCGCTCCATCTTTCGTCTTCGAGTTTAGAGAGGTTTGACTATAATCATTTTTAAGTCTTCGGATTTCAATTTTCAGTGGATAATTCTCATTATGTTCATTACTGGAGTCATCACTTCTTCATGCTGGATTCTTATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACYGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAAAAAACGCTCCATTGCTAATTGATCCGTTTCAGGAGCAAGAATGGCCGGCCGGACGCTGAAAAGAATCATGACCTGAATTCTGCTTGCCACGTGAAATTACGTTGTTTGAAGACCGAGAAAACCATCGTTAAGACGTATCATATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>499 234 193 74</canonical_bands>
                <polymorphic_bands>573 234 193</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAAATATAGTTCAAGGATTTCTTA</pcr_primer_p1>
		<pcr_primer_p2>AGTGAAAAGATGATAAAGGAACA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACT</canonical_amplicon>
		<polymorphic_amplicon>CTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACYGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5066</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>692806</contig_pos>
        <strand></strand>
        <context>GGATTTCTTA[T/C]AAYTAGTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTA</left_flank>
        <right_flank>AAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTGGAAATTTTGTGGTTCTTTTTTTAAAGTTTTCTTCCTGAGAGATATAACCGAAATATGGATAGTCCCTGCTCGATCGAAAAAGATGGGAATGTTACAATTTGTATGATAGAATCAATTGAAAAACTAGATGCGCAAAGCGCTCCATCTTTCGTCTTCGAGTTTAGAGAGGTTTGACTATAATCATTTTTAAGTCTTCGGATTTCAATTTTCAGTGGATAATTCTCATTATGTTCATTACTGGAGTCATCACTTCTTCATGCTGGATTCTTATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAAAAAACGCTCCATTGCTAATTGATCCGTTTCAGGAGCAAGAATGGCCGGCCGGACGCTGAAAAGAATCATGACCTGAATTCTGCTTGCCACGTGAAATTACGTTGTTTG</canonical>
            <polymorphic>CTTTGGAAATTTTGTGGTTCTTTTTTTAAAGTTTTCTTCCTGAGAGATATAACCGAAATATGGATAGTCCCTGCTCGATCGAAAAAGATGGGAATGTTACAATTTGTATGATAGAATCAATTGAAAAACTAGATGCGCAAAGCGCTCCATCTTTCGTCTTCGAGTTTAGAGAGGTTTGACTATAATCATTTTTAAGTCTTCGGATTTCAATTTTCAGTGGATAATTCTCATTATGTTCATTACTGGAGTCATCACTTCTTCATGCTGGATTCTTATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTAYAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAAAAAACGCTCCATTGCTAATTGATCCGTTTCAGGAGCAAGAATGGCCGGCCGGACGCTGAAAAGAATCATGACCTGAATTCTGCTTGCCACGTGAAATTACGTTGTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACCAAGTTTAAAGGTGGAGATA</pcr_primer_p1>
		<pcr_primer_p2>AAGAACTCTCCTCCTTCTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>AACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTT</canonical_amplicon>
		<polymorphic_amplicon>AACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTAYAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5067</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>692675</contig_pos>
        <strand>+</strand>
        <context>TTTTCCTGTA[C/T]GAAAATTAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTA</left_flank>
        <right_flank>GAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATAAATTGAAAAAAAATTGTGATCTTTGCAGGGAAAGATGTGCGCGGAGCCCCAAACTAGGAAAAGTCACAAAAAAAGCACAACAAAGAGATAGACAAAGTCTCTTCCATAAAAGCCGATTTTTTTCTGGCTTTGGAAATTTTGTGGTTCTTTTTTTAAAGTTTTCTTCCTGAGAGATATAACCGAAATATGGATAGTCCCTGCTCGATCGAAAAAGATGGGAATGTTACAATTTGTATGATAGAATCAATTGAAAAACTAGATGCGCAAAGCGCTCCATCTTTCGTCTTCGAGTTTAGAGAGGTTTGACTATAATCATTTTTAAGTCTTCGGATTTCAATTTTCAGTGGATAATTCTCATTATGTTCATTACTGGAGTCATCACTTCTTCATGCTGGATTCTTATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAAT</canonical>
            <polymorphic>CATAAATTGAAAAAAAATTGTGATCTTTGCAGGGAAAGATGTGCGCGGAGCCCCAAACTAGGAAAAGTCACAAAAAAAGCACAACAAAGAGATAGACAAAGTCTCTTCCATAAAAGCCGATTTTTTTCTGGCTTTGGAAATTTTGTGGTTCTTTTTTTAAAGTTTTCTTCCTGAGAGATATAACCGAAATATGGATAGTCCCTGCTCGATCGAAAAAGATGGGAATGTTACAATTTGTATGATAGAATCAATTGAAAAACTAGATGCGCAAAGCGCTCCATCTTTCGTCTTCGAGTTTAGAGAGGTTTGACTATAATCATTTTTAAGTCTTCGGATTTCAATTTTCAGTGGATAATTCTCATTATGTTCATTACTGGAGTCATCACTTCTTCATGCTGGATTCTTATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTAYGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCATTTTTAAGTCTTCGGATTT</pcr_primer_p1>
		<pcr_primer_p2>GTCTACATATCTCCACCTTTAAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCATTTTTAAGTCTTCGGATTTCAATTTTCAGTGGATAATTCTCATTATGTTCATTACTGGAGTCATCACTTCTTCATGCTGGATTCTTATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGAC</canonical_amplicon>
		<polymorphic_amplicon>ATCATTTTTAAGTCTTCGGATTTCAATTTTCAGTGGATAATTCTCATTATGTTCATTACTGGAGTCATCACTTCTTCATGCTGGATTCTTATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTAYGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5068</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>751992</contig_pos>
        <strand></strand>
        <context>ACTATATAGT[C/T]AGAAACAATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTATCGTGATCCTCACCTCTATATTGTATATTCCCTTTTACTATATAGT</left_flank>
        <right_flank>AGAAACAATCTAAACGCAGCTGGCACTCAGTCAAGGATGCAAAATGCCGT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCTGATCATGCTCGACAAAGAGCATTTCAAACTGTCCTGCTTCAAAATCATGTTCCAACTTGCCATCACCGACTTTTTTGTCATTTGTATCAATTCGATTGTTACTGGAATCTTAGCTATCCTGGGAGCAGTATACTGTACCTATCCGACACTCATCTACCTTACTGGTCTGGTGGCAATGTCGTTGTGGTGCTCTTCATGTTTCACCTCGTTGATCCTGGTTTGCAATCGGATCTTGGTGATATCGAAACCACATCTGGAGATGGTCATTTTTGAGGGCAATAAAACATATATAGTGCTGAGCTTCTCTTTGATTTACGCTCTATACTTCTTGTTCACCACACCGCACGTTTACAATTCGAAGCATCATGCATGGCTCTTCGACCCCATGATTTTCCCAGATATGGCTAAAGAGTACGATAATTTGGCTCATACAATCAACAACTTTTCTATCGTGATCCTCACCTCTATATTGTATATTCCCTTTTACTATATAGTCAGAAACAATCTAAACGCAGCTGGCACTCAGTCAAGGATGCAAAATGCCGTAAGCTTCGACAAACAAGTATTTTATTATTTCAGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATACTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAATCTAGTTAACGTGTCTCCTGGAGTCATAATTTTCGGACATGTGCTCTGGCAATTCGTGCATGGAGCACCTGTTTTTATTTATATCGCTTTGAATGATATGATAAGAAAACGGTTTTTTGCAATGATAAAAGTCCAGAAAAAAAGTAATTCAACTGTGGTGGCTTTATCAATAATCAATCATTCGGCGCTTGTGCAACACTAAGTGTCAGTATTCGAATCAACAAGTCCGGTTCCTGGGTCGAAAGTGACTTTTTTGCATTTCAAATGAGTTTTATCGAATAAAGTGTTATTTCCTAGTCTCTGAATTTCCTATAAACAAGATAATTTTCA</canonical>
            <polymorphic>CCCTGATCATGCTCGACAAAGAGCATTTCAAACTGTCCTGCTTCAAAATCATGTTCCAACTTGCCATCACCGACTTTTTTGTCATTTGTATCAATTCGATTGTTACTGGAATCTTAGCTATCCTGGGAGCAGTATACTGTACCTATCCGACACTCATCTACCTTACTGGTCTGGTGGCAATGTCGTTGTGGTGCTCTTCATGTTTCACCTCGTTGATCCTGGTTTGCAATCGGATCTTGGTGATATCGAAACCACATCTGGAGATGGTCATTTTTGAGGGCAATAAAACATATATAGTGCTGAGCTTCTCTTTGATTTACGCTCTATACTTCTTGTTCACCACACCGCACGTTTACAATTCGAAGCATCATGCATGGCTCTTCGACCCCATGATTTTCCCAGATATGGCTAAAGAGTACGATAATTTGGCTCATACAATCAACAACTTTTCTATCGTGATCCTCACCTCTATATTGTATATTCCCTTTTACTATATAGTYAGAAACAATCTAAACGCAGCTGGCACTCAGTCAAGGATGCAAAATGCCGTAAGCTTCGACAAACAAGTATTTTATTATTTCAGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATACTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAATCTAGTTAACGTGTCTCCTGGAGTCATAATTTTCGGACATGTGCTCTGGCAATTCGTGCATGGAGCACCTGTTTTTATTTATATCGCTTTGAATGATATGATAAGAAAACGGTTTTTTGCAATGATAAAAGTCCAGAAAAAAAGTAATTCAACTGTGGTGGCTTTATCAATAATCAATCATTCGGCGCTTGTGCAACACTAAGTGTCAGTATTCGAATCAACAAGTCCGGTTCCTGGGTCGAAAGTGACTTTTTTGCATTTCAAATGAGTTTTATCGAATAAAGTGTTATTTCCTAGTCTCTGAATTTCCTATAAACAAGATAATTTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>269 267 148 113 84 81 28 10</canonical_bands>
                <polymorphic_bands>350 267 148 113 84 28 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAATTTGGCTCATACAATCAAC</pcr_primer_p1>
		<pcr_primer_p2>TTCATGAAAACGTAAATCACAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAATTTGGCTCATACAATCAACAACTTTTCTATCGTGATCCTCACCTCTATATTGTATATTCCCTTTTACTATATAGTCAGAAACAATCTAAACGCAGCTGGCACTCAGTCAAGGATGCAAAATGCCGTAAGCTTCGACAAACAAGTATTTTATTATTTCAGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATACTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAA</canonical_amplicon>
		<polymorphic_amplicon>ATAATTTGGCTCATACAATCAACAACTTTTCTATCGTGATCCTCACCTCTATATTGTATATTCCCTTTTACTATATAGTYAGAAACAATCTAAACGCAGCTGGCACTCAGTCAAGGATGCAAAATGCCGTAAGCTTCGACAAACAAGTATTTTATTATTTCAGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATACTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5069</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>752019</contig_pos>
        <strand></strand>
        <context>CAGCTGGCAC[T/C]CAGTCAAGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TATATTCCCTTTTACTATATAGTCAGAAACAATCTAAACGCAGCTGGCAC</left_flank>
        <right_flank>CAGTCAAGGATGCAAAATGCCGTAAGCTTCGACAAACAAGTATTTTATTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAACTGTCCTGCTTCAAAATCATGTTCCAACTTGCCATCACCGACTTTTTTGTCATTTGTATCAATTCGATTGTTACTGGAATCTTAGCTATCCTGGGAGCAGTATACTGTACCTATCCGACACTCATCTACCTTACTGGTCTGGTGGCAATGTCGTTGTGGTGCTCTTCATGTTTCACCTCGTTGATCCTGGTTTGCAATCGGATCTTGGTGATATCGAAACCACATCTGGAGATGGTCATTTTTGAGGGCAATAAAACATATATAGTGCTGAGCTTCTCTTTGATTTACGCTCTATACTTCTTGTTCACCACACCGCACGTTTACAATTCGAAGCATCATGCATGGCTCTTCGACCCCATGATTTTCCCAGATATGGCTAAAGAGTACGATAATTTGGCTCATACAATCAACAACTTTTCTATCGTGATCCTCACCTCTATATTGTATATTCCCTTTTACTATATAGTCAGAAACAATCTAAACGCAGCTGGCACTCAGTCAAGGATGCAAAATGCCGTAAGCTTCGACAAACAAGTATTTTATTATTTCAGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATACTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAATCTAGTTAACGTGTCTCCTGGAGTCATAATTTTCGGACATGTGCTCTGGCAATTCGTGCATGGAGCACCTGTTTTTATTTATATCGCTTTGAATGATATGATAAGAAAACGGTTTTTTGCAATGATAAAAGTCCAGAAAAAAAGTAATTCAACTGTGGTGGCTTTATCAATAATCAATCATTCGGCGCTTGTGCAACACTAAGTGTCAGTATTCGAATCAACAAGTCCGGTTCCTGGGTCGAAAGTGACTTTTTTGCATTTCAAATGAGTTTTATCGAATAAAGTGTTATTTCCTAGTCTCTGAATTTCCTATAAACAAGATAATTTTCAGCTAAGTCTGTTTAGAAATGAGCTTAA</canonical>
            <polymorphic>TCAAACTGTCCTGCTTCAAAATCATGTTCCAACTTGCCATCACCGACTTTTTTGTCATTTGTATCAATTCGATTGTTACTGGAATCTTAGCTATCCTGGGAGCAGTATACTGTACCTATCCGACACTCATCTACCTTACTGGTCTGGTGGCAATGTCGTTGTGGTGCTCTTCATGTTTCACCTCGTTGATCCTGGTTTGCAATCGGATCTTGGTGATATCGAAACCACATCTGGAGATGGTCATTTTTGAGGGCAATAAAACATATATAGTGCTGAGCTTCTCTTTGATTTACGCTCTATACTTCTTGTTCACCACACCGCACGTTTACAATTCGAAGCATCATGCATGGCTCTTCGACCCCATGATTTTCCCAGATATGGCTAAAGAGTACGATAATTTGGCTCATACAATCAACAACTTTTCTATCGTGATCCTCACCTCTATATTGTATATTCCCTTTTACTATATAGTCAGAAACAATCTAAACGCAGCTGGCACYCAGTCAAGGATGCAAAATGCCGTAAGCTTCGACAAACAAGTATTTTATTATTTCAGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATACTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAATCTAGTTAACGTGTCTCCTGGAGTCATAATTTTCGGACATGTGCTCTGGCAATTCGTGCATGGAGCACCTGTTTTTATTTATATCGCTTTGAATGATATGATAAGAAAACGGTTTTTTGCAATGATAAAAGTCCAGAAAAAAAGTAATTCAACTGTGGTGGCTTTATCAATAATCAATCATTCGGCGCTTGTGCAACACTAAGTGTCAGTATTCGAATCAACAAGTCCGGTTCCTGGGTCGAAAGTGACTTTTTTGCATTTCAAATGAGTTTTATCGAATAAAGTGTTATTTCCTAGTCTCTGAATTTCCTATAAACAAGATAATTTTCAGCTAAGTCTGTTTAGAAATGAGCTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>343 226 187 133 86 25</canonical_bands>
                <polymorphic_bands>569 187 133 86 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAATTTGGCTCATACAATCAAC</pcr_primer_p1>
		<pcr_primer_p2>TTCATGAAAACGTAAATCACAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAATTTGGCTCATACAATCAACAACTTTTCTATCGTGATCCTCACCTCTATATTGTATATTCCCTTTTACTATATAGTCAGAAACAATCTAAACGCAGCTGGCACTCAGTCAAGGATGCAAAATGCCGTAAGCTTCGACAAACAAGTATTTTATTATTTCAGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATACTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAA</canonical_amplicon>
		<polymorphic_amplicon>ATAATTTGGCTCATACAATCAACAACTTTTCTATCGTGATCCTCACCTCTATATTGTATATTCCCTTTTACTATATAGTCAGAAACAATCTAAACGCAGCTGGCACYCAGTCAAGGATGCAAAATGCCGTAAGCTTCGACAAACAAGTATTTTATTATTTCAGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATACTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5070</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>752040</contig_pos>
        <strand></strand>
        <context>TGCAAAATGC[C/G]GTAAGCTTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTCAGAAACAATCTAAACGCAGCTGGCACTCAGTCAAGGATGCAAAATGC</left_flank>
        <right_flank>GTAAGCTTCGACAAACAAGTATTTTATTATTTCAGAATCTTTCAGAAAAT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATGTTCCAACTTGCCATCACCGACTTTTTTGTCATTTGTATCAATTCGATTGTTACTGGAATCTTAGCTATCCTGGGAGCAGTATACTGTACCTATCCGACACTCATCTACCTTACTGGTCTGGTGGCAATGTCGTTGTGGTGCTCTTCATGTTTCACCTCGTTGATCCTGGTTTGCAATCGGATCTTGGTGATATCGAAACCACATCTGGAGATGGTCATTTTTGAGGGCAATAAAACATATATAGTGCTGAGCTTCTCTTTGATTTACGCTCTATACTTCTTGTTCACCACACCGCACGTTTACAATTCGAAGCATCATGCATGGCTCTTCGACCCCATGATTTTCCCAGATATGGCTAAAGAGTACGATAATTTGGCTCATACAATCAACAACTTTTCTATCGTGATCCTCACCTCTATATTGTATATTCCCTTTTACTATATAGTCAGAAACAATCTAAACGCAGCTGGCACTCAGTCAAGGATGCAAAATGCCGTAAGCTTCGACAAACAAGTATTTTATTATTTCAGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATACTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAATCTAGTTAACGTGTCTCCTGGAGTCATAATTTTCGGACATGTGCTCTGGCAATTCGTGCATGGAGCACCTGTTTTTATTTATATCGCTTTGAATGATATGATAAGAAAACGGTTTTTTGCAATGATAAAAGTCCAGAAAAAAAGTAATTCAACTGTGGTGGCTTTATCAATAATCAATCATTCGGCGCTTGTGCAACACTAAGTGTCAGTATTCGAATCAACAAGTCCGGTTCCTGGGTCGAAAGTGACTTTTTTGCATTTCAAATGAGTTTTATCGAATAAAGTGTTATTTCCTAGTCTCTGAATTTCCTATAAACAAGATAATTTTCAGCTAAGTCTGTTTAGAAATGAGCTTAACAGAGGAAATGCAATGATCTG</canonical>
            <polymorphic>TCATGTTCCAACTTGCCATCACCGACTTTTTTGTCATTTGTATCAATTCGATTGTTACTGGAATCTTAGCTATCCTGGGAGCAGTATACTGTACCTATCCGACACTCATCTACCTTACTGGTCTGGTGGCAATGTCGTTGTGGTGCTCTTCATGTTTCACCTCGTTGATCCTGGTTTGCAATCGGATCTTGGTGATATCGAAACCACATCTGGAGATGGTCATTTTTGAGGGCAATAAAACATATATAGTGCTGAGCTTCTCTTTGATTTACGCTCTATACTTCTTGTTCACCACACCGCACGTTTACAATTCGAAGCATCATGCATGGCTCTTCGACCCCATGATTTTCCCAGATATGGCTAAAGAGTACGATAATTTGGCTCATACAATCAACAACTTTTCTATCGTGATCCTCACCTCTATATTGTATATTCCCTTTTACTATATAGTCAGAAACAATCTAAACGCAGCTGGCACTCAGTCAAGGATGCAAAATGCSGTAAGCTTCGACAAACAAGTATTTTATTATTTCAGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATACTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAATCTAGTTAACGTGTCTCCTGGAGTCATAATTTTCGGACATGTGCTCTGGCAATTCGTGCATGGAGCACCTGTTTTTATTTATATCGCTTTGAATGATATGATAAGAAAACGGTTTTTTGCAATGATAAAAGTCCAGAAAAAAAGTAATTCAACTGTGGTGGCTTTATCAATAATCAATCATTCGGCGCTTGTGCAACACTAAGTGTCAGTATTCGAATCAACAAGTCCGGTTCCTGGGTCGAAAGTGACTTTTTTGCATTTCAAATGAGTTTTATCGAATAAAGTGTTATTTCCTAGTCTCTGAATTTCCTATAAACAAGATAATTTTCAGCTAAGTCTGTTTAGAAATGAGCTTAACAGAGGAAATGCAATGATCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAATTTGGCTCATACAATCAAC</pcr_primer_p1>
		<pcr_primer_p2>TTCATGAAAACGTAAATCACAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAATTTGGCTCATACAATCAACAACTTTTCTATCGTGATCCTCACCTCTATATTGTATATTCCCTTTTACTATATAGTCAGAAACAATCTAAACGCAGCTGGCACTCAGTCAAGGATGCAAAATGCCGTAAGCTTCGACAAACAAGTATTTTATTATTTCAGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATACTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAA</canonical_amplicon>
		<polymorphic_amplicon>ATAATTTGGCTCATACAATCAACAACTTTTCTATCGTGATCCTCACCTCTATATTGTATATTCCCTTTTACTATATAGTCAGAAACAATCTAAACGCAGCTGGCACTCAGTCAAGGATGCAAAATGCSGTAAGCTTCGACAAACAAGTATTTTATTATTTCAGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATACTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5071</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>752057</contig_pos>
        <strand></strand>
        <context>TTCGACAAAC[A/G]AGTATTTTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCAGCTGGCACTCAGTCAAGGATGCAAAATGCCGTAAGCTTCGACAAAC</left_flank>
        <right_flank>AGTATTTTATTATTTCAGAATCTTTCAGAAAATCCAAGTGTTCATTCAAT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCACCGACTTTTTTGTCATTTGTATCAATTCGATTGTTACTGGAATCTTAGCTATCCTGGGAGCAGTATACTGTACCTATCCGACACTCATCTACCTTACTGGTCTGGTGGCAATGTCGTTGTGGTGCTCTTCATGTTTCACCTCGTTGATCCTGGTTTGCAATCGGATCTTGGTGATATCGAAACCACATCTGGAGATGGTCATTTTTGAGGGCAATAAAACATATATAGTGCTGAGCTTCTCTTTGATTTACGCTCTATACTTCTTGTTCACCACACCGCACGTTTACAATTCGAAGCATCATGCATGGCTCTTCGACCCCATGATTTTCCCAGATATGGCTAAAGAGTACGATAATTTGGCTCATACAATCAACAACTTTTCTATCGTGATCCTCACCTCTATATTGTATATTCCCTTTTACTATATAGTCAGAAACAATCTAAACGCAGCTGGCACTCAGTCAAGGATGCAAAATGCCGTAAGCTTCGACAAACAAGTATTTTATTATTTCAGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATACTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAATCTAGTTAACGTGTCTCCTGGAGTCATAATTTTCGGACATGTGCTCTGGCAATTCGTGCATGGAGCACCTGTTTTTATTTATATCGCTTTGAATGATATGATAAGAAAACGGTTTTTTGCAATGATAAAAGTCCAGAAAAAAAGTAATTCAACTGTGGTGGCTTTATCAATAATCAATCATTCGGCGCTTGTGCAACACTAAGTGTCAGTATTCGAATCAACAAGTCCGGTTCCTGGGTCGAAAGTGACTTTTTTGCATTTCAAATGAGTTTTATCGAATAAAGTGTTATTTCCTAGTCTCTGAATTTCCTATAAACAAGATAATTTTCAGCTAAGTCTGTTTAGAAATGAGCTTAACAGAGGAAATGCAATGATCTGACGTAATGAACCTTTAC</canonical>
            <polymorphic>ATCACCGACTTTTTTGTCATTTGTATCAATTCGATTGTTACTGGAATCTTAGCTATCCTGGGAGCAGTATACTGTACCTATCCGACACTCATCTACCTTACTGGTCTGGTGGCAATGTCGTTGTGGTGCTCTTCATGTTTCACCTCGTTGATCCTGGTTTGCAATCGGATCTTGGTGATATCGAAACCACATCTGGAGATGGTCATTTTTGAGGGCAATAAAACATATATAGTGCTGAGCTTCTCTTTGATTTACGCTCTATACTTCTTGTTCACCACACCGCACGTTTACAATTCGAAGCATCATGCATGGCTCTTCGACCCCATGATTTTCCCAGATATGGCTAAAGAGTACGATAATTTGGCTCATACAATCAACAACTTTTCTATCGTGATCCTCACCTCTATATTGTATATTCCCTTTTACTATATAGTCAGAAACAATCTAAACGCAGCTGGCACTCAGTCAAGGATGCAAAATGCCGTAAGCTTCGACAAACRAGTATTTTATTATTTCAGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATACTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAATCTAGTTAACGTGTCTCCTGGAGTCATAATTTTCGGACATGTGCTCTGGCAATTCGTGCATGGAGCACCTGTTTTTATTTATATCGCTTTGAATGATATGATAAGAAAACGGTTTTTTGCAATGATAAAAGTCCAGAAAAAAAGTAATTCAACTGTGGTGGCTTTATCAATAATCAATCATTCGGCGCTTGTGCAACACTAAGTGTCAGTATTCGAATCAACAAGTCCGGTTCCTGGGTCGAAAGTGACTTTTTTGCATTTCAAATGAGTTTTATCGAATAAAGTGTTATTTCCTAGTCTCTGAATTTCCTATAAACAAGATAATTTTCAGCTAAGTCTGTTTAGAAATGAGCTTAACAGAGGAAATGCAATGATCTGACGTAATGAACCTTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAATTTGGCTCATACAATCAAC</pcr_primer_p1>
		<pcr_primer_p2>TTCATGAAAACGTAAATCACAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAATTTGGCTCATACAATCAACAACTTTTCTATCGTGATCCTCACCTCTATATTGTATATTCCCTTTTACTATATAGTCAGAAACAATCTAAACGCAGCTGGCACTCAGTCAAGGATGCAAAATGCCGTAAGCTTCGACAAACAAGTATTTTATTATTTCAGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATACTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAA</canonical_amplicon>
		<polymorphic_amplicon>ATAATTTGGCTCATACAATCAACAACTTTTCTATCGTGATCCTCACCTCTATATTGTATATTCCCTTTTACTATATAGTCAGAAACAATCTAAACGCAGCTGGCACTCAGTCAAGGATGCAAAATGCCGTAAGCTTCGACAAACRAGTATTTTATTATTTCAGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATACTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5072</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>752112</contig_pos>
        <strand></strand>
        <context>TTCAATCGAT[A/C]CTAATTTGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTATTATTTCAGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGAT</left_flank>
        <right_flank>CTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAA</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTGGGAGCAGTATACTGTACCTATCCGACACTCATCTACCTTACTGGTCTGGTGGCAATGTCGTTGTGGTGCTCTTCATGTTTCACCTCGTTGATCCTGGTTTGCAATCGGATCTTGGTGATATCGAAACCACATCTGGAGATGGTCATTTTTGAGGGCAATAAAACATATATAGTGCTGAGCTTCTCTTTGATTTACGCTCTATACTTCTTGTTCACCACACCGCACGTTTACAATTCGAAGCATCATGCATGGCTCTTCGACCCCATGATTTTCCCAGATATGGCTAAAGAGTACGATAATTTGGCTCATACAATCAACAACTTTTCTATCGTGATCCTCACCTCTATATTGTATATTCCCTTTTACTATATAGTCAGAAACAATCTAAACGCAGCTGGCACTCAGTCAAGGATGCAAAATGCCGTAAGCTTCGACAAACAAGTATTTTATTATTTCAGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATACTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAATCTAGTTAACGTGTCTCCTGGAGTCATAATTTTCGGACATGTGCTCTGGCAATTCGTGCATGGAGCACCTGTTTTTATTTATATCGCTTTGAATGATATGATAAGAAAACGGTTTTTTGCAATGATAAAAGTCCAGAAAAAAAGTAATTCAACTGTGGTGGCTTTATCAATAATCAATCATTCGGCGCTTGTGCAACACTAAGTGTCAGTATTCGAATCAACAAGTCCGGTTCCTGGGTCGAAAGTGACTTTTTTGCATTTCAAATGAGTTTTATCGAATAAAGTGTTATTTCCTAGTCTCTGAATTTCCTATAAACAAGATAATTTTCAGCTAAGTCTGTTTAGAAATGAGCTTAACAGAGGAAATGCAATGATCTGACGTAATGAACCTTTACAGTTTCGATTTATACATCGAAATAGCGTAGTCTTCCTAGTAGCCAATGGTGTTCC</canonical>
            <polymorphic>TCCTGGGAGCAGTATACTGTACCTATCCGACACTCATCTACCTTACTGGTCTGGTGGCAATGTCGTTGTGGTGCTCTTCATGTTTCACCTCGTTGATCCTGGTTTGCAATCGGATCTTGGTGATATCGAAACCACATCTGGAGATGGTCATTTTTGAGGGCAATAAAACATATATAGTGCTGAGCTTCTCTTTGATTTACGCTCTATACTTCTTGTTCACCACACCGCACGTTTACAATTCGAAGCATCATGCATGGCTCTTCGACCCCATGATTTTCCCAGATATGGCTAAAGAGTACGATAATTTGGCTCATACAATCAACAACTTTTCTATCGTGATCCTCACCTCTATATTGTATATTCCCTTTTACTATATAGTCAGAAACAATCTAAACGCAGCTGGCACTCAGTCAAGGATGCAAAATGCCGTAAGCTTCGACAAACAAGTATTTTATTATTTCAGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATMCTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAATCTAGTTAACGTGTCTCCTGGAGTCATAATTTTCGGACATGTGCTCTGGCAATTCGTGCATGGAGCACCTGTTTTTATTTATATCGCTTTGAATGATATGATAAGAAAACGGTTTTTTGCAATGATAAAAGTCCAGAAAAAAAGTAATTCAACTGTGGTGGCTTTATCAATAATCAATCATTCGGCGCTTGTGCAACACTAAGTGTCAGTATTCGAATCAACAAGTCCGGTTCCTGGGTCGAAAGTGACTTTTTTGCATTTCAAATGAGTTTTATCGAATAAAGTGTTATTTCCTAGTCTCTGAATTTCCTATAAACAAGATAATTTTCAGCTAAGTCTGTTTAGAAATGAGCTTAACAGAGGAAATGCAATGATCTGACGTAATGAACCTTTACAGTTTCGATTTATACATCGAAATAGCGTAGTCTTCCTAGTAGCCAATGGTGTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCATACAATCAACAACTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CTAGATTCATGAAAACGTAAATCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GCTCATACAATCAACAACTTTTCTATCGTGATCCTCACCTCTATATTGTATATTCCCTTTTACTATATAGTCAGAAACAATCTAAACGCAGCTGGCACTCAGTCAAGGATGCAAAATGCCGTAAGCTTCGACAAACAAGTATTTTATTATTTCAGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATACTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAATCTAG</canonical_amplicon>
		<polymorphic_amplicon>GCTCATACAATCAACAACTTTTCTATCGTGATCCTCACCTCTATATTGTATATTCCCTTTTACTATATAGTCAGAAACAATCTAAACGCAGCTGGCACTCAGTCAAGGATGCAAAATGCCGTAAGCTTCGACAAACAAGTATTTTATTATTTCAGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATMCTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAATCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5073</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>752169</contig_pos>
        <strand></strand>
        <context>TGAATCTAGT[T/A]AACGTGTCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAATCTAGT</left_flank>
        <right_flank>AACGTGTCTCCTGGAGTCATAATTTTCGGACATGTGCTCTGGCAATTCGT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATGTCGTTGTGGTGCTCTTCATGTTTCACCTCGTTGATCCTGGTTTGCAATCGGATCTTGGTGATATCGAAACCACATCTGGAGATGGTCATTTTTGAGGGCAATAAAACATATATAGTGCTGAGCTTCTCTTTGATTTACGCTCTATACTTCTTGTTCACCACACCGCACGTTTACAATTCGAAGCATCATGCATGGCTCTTCGACCCCATGATTTTCCCAGATATGGCTAAAGAGTACGATAATTTGGCTCATACAATCAACAACTTTTCTATCGTGATCCTCACCTCTATATTGTATATTCCCTTTTACTATATAGTCAGAAACAATCTAAACGCAGCTGGCACTCAGTCAAGGATGCAAAATGCCGTAAGCTTCGACAAACAAGTATTTTATTATTTCAGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATACTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAATCTAGTTAACGTGTCTCCTGGAGTCATAATTTTCGGACATGTGCTCTGGCAATTCGTGCATGGAGCACCTGTTTTTATTTATATCGCTTTGAATGATATGATAAGAAAACGGTTTTTTGCAATGATAAAAGTCCAGAAAAAAAGTAATTCAACTGTGGTGGCTTTATCAATAATCAATCATTCGGCGCTTGTGCAACACTAAGTGTCAGTATTCGAATCAACAAGTCCGGTTCCTGGGTCGAAAGTGACTTTTTTGCATTTCAAATGAGTTTTATCGAATAAAGTGTTATTTCCTAGTCTCTGAATTTCCTATAAACAAGATAATTTTCAGCTAAGTCTGTTTAGAAATGAGCTTAACAGAGGAAATGCAATGATCTGACGTAATGAACCTTTACAGTTTCGATTTATACATCGAAATAGCGTAGTCTTCCTAGTAGCCAATGGTGTTCCTTGTGGCATCTGACATTTTAGCCTGTGGGTGTGGACAAGTCTTGGCCAGGTTTTGGT</canonical>
            <polymorphic>CAATGTCGTTGTGGTGCTCTTCATGTTTCACCTCGTTGATCCTGGTTTGCAATCGGATCTTGGTGATATCGAAACCACATCTGGAGATGGTCATTTTTGAGGGCAATAAAACATATATAGTGCTGAGCTTCTCTTTGATTTACGCTCTATACTTCTTGTTCACCACACCGCACGTTTACAATTCGAAGCATCATGCATGGCTCTTCGACCCCATGATTTTCCCAGATATGGCTAAAGAGTACGATAATTTGGCTCATACAATCAACAACTTTTCTATCGTGATCCTCACCTCTATATTGTATATTCCCTTTTACTATATAGTCAGAAACAATCTAAACGCAGCTGGCACTCAGTCAAGGATGCAAAATGCCGTAAGCTTCGACAAACAAGTATTTTATTATTTCAGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATACTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAATCTAGTWAACGTGTCTCCTGGAGTCATAATTTTCGGACATGTGCTCTGGCAATTCGTGCATGGAGCACCTGTTTTTATTTATATCGCTTTGAATGATATGATAAGAAAACGGTTTTTTGCAATGATAAAAGTCCAGAAAAAAAGTAATTCAACTGTGGTGGCTTTATCAATAATCAATCATTCGGCGCTTGTGCAACACTAAGTGTCAGTATTCGAATCAACAAGTCCGGTTCCTGGGTCGAAAGTGACTTTTTTGCATTTCAAATGAGTTTTATCGAATAAAGTGTTATTTCCTAGTCTCTGAATTTCCTATAAACAAGATAATTTTCAGCTAAGTCTGTTTAGAAATGAGCTTAACAGAGGAAATGCAATGATCTGACGTAATGAACCTTTACAGTTTCGATTTATACATCGAAATAGCGTAGTCTTCCTAGTAGCCAATGGTGTTCCTTGTGGCATCTGACATTTTAGCCTGTGGGTGTGGACAAGTCTTGGCCAGGTTTTGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTTAAC</site>
                <isoschizomers>
                    <enzyme>BstHPI</enzyme>
                    <enzyme>HpaI</enzyme>
                    <enzyme>KspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>499 348 153</canonical_bands>
                <polymorphic_bands>847 153</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAATCTTTCAGAAAATCCAAGT</pcr_primer_p1>
		<pcr_primer_p2>CCACCACAGTTGAATTACTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATACTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAATCTAGTTAACGTGTCTCCTGGAGTCATAATTTTCGGACATGTGCTCTGGCAATTCGTGCATGGAGCACCTGTTTTTATTTATATCGCTTTGAATGATATGATAAGAAAACGGTTTTTTGCAATGATAAAAGTCCAGAAAAAAAGTAATTCAACTGTGGTGG</canonical_amplicon>
		<polymorphic_amplicon>AGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATACTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAATCTAGTWAACGTGTCTCCTGGAGTCATAATTTTCGGACATGTGCTCTGGCAATTCGTGCATGGAGCACCTGTTTTTATTTATATCGCTTTGAATGATATGATAAGAAAACGGTTTTTTGCAATGATAAAAGTCCAGAAAAAAAGTAATTCAACTGTGGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5074</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>752190</contig_pos>
        <strand></strand>
        <context>CTGGAGTCAT[A/T]ATTTTCGGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTGTGATTTACGTTTTCATGAATCTAGTTAACGTGTCTCCTGGAGTCAT</left_flank>
        <right_flank>ATTTTCGGACATGTGCTCTGGCAATTCGTGCATGGAGCACCTGTTTTTAT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGTTTCACCTCGTTGATCCTGGTTTGCAATCGGATCTTGGTGATATCGAAACCACATCTGGAGATGGTCATTTTTGAGGGCAATAAAACATATATAGTGCTGAGCTTCTCTTTGATTTACGCTCTATACTTCTTGTTCACCACACCGCACGTTTACAATTCGAAGCATCATGCATGGCTCTTCGACCCCATGATTTTCCCAGATATGGCTAAAGAGTACGATAATTTGGCTCATACAATCAACAACTTTTCTATCGTGATCCTCACCTCTATATTGTATATTCCCTTTTACTATATAGTCAGAAACAATCTAAACGCAGCTGGCACTCAGTCAAGGATGCAAAATGCCGTAAGCTTCGACAAACAAGTATTTTATTATTTCAGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATACTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAATCTAGTTAACGTGTCTCCTGGAGTCATAATTTTCGGACATGTGCTCTGGCAATTCGTGCATGGAGCACCTGTTTTTATTTATATCGCTTTGAATGATATGATAAGAAAACGGTTTTTTGCAATGATAAAAGTCCAGAAAAAAAGTAATTCAACTGTGGTGGCTTTATCAATAATCAATCATTCGGCGCTTGTGCAACACTAAGTGTCAGTATTCGAATCAACAAGTCCGGTTCCTGGGTCGAAAGTGACTTTTTTGCATTTCAAATGAGTTTTATCGAATAAAGTGTTATTTCCTAGTCTCTGAATTTCCTATAAACAAGATAATTTTCAGCTAAGTCTGTTTAGAAATGAGCTTAACAGAGGAAATGCAATGATCTGACGTAATGAACCTTTACAGTTTCGATTTATACATCGAAATAGCGTAGTCTTCCTAGTAGCCAATGGTGTTCCTTGTGGCATCTGACATTTTAGCCTGTGGGTGTGGACAAGTCTTGGCCAGGTTTTGGTCCAAAGTTTTTCAAAAACGGT</canonical>
            <polymorphic>CATGTTTCACCTCGTTGATCCTGGTTTGCAATCGGATCTTGGTGATATCGAAACCACATCTGGAGATGGTCATTTTTGAGGGCAATAAAACATATATAGTGCTGAGCTTCTCTTTGATTTACGCTCTATACTTCTTGTTCACCACACCGCACGTTTACAATTCGAAGCATCATGCATGGCTCTTCGACCCCATGATTTTCCCAGATATGGCTAAAGAGTACGATAATTTGGCTCATACAATCAACAACTTTTCTATCGTGATCCTCACCTCTATATTGTATATTCCCTTTTACTATATAGTCAGAAACAATCTAAACGCAGCTGGCACTCAGTCAAGGATGCAAAATGCCGTAAGCTTCGACAAACAAGTATTTTATTATTTCAGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATACTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAATCTAGTTAACGTGTCTCCTGGAGTCATWATTTTCGGACATGTGCTCTGGCAATTCGTGCATGGAGCACCTGTTTTTATTTATATCGCTTTGAATGATATGATAAGAAAACGGTTTTTTGCAATGATAAAAGTCCAGAAAAAAAGTAATTCAACTGTGGTGGCTTTATCAATAATCAATCATTCGGCGCTTGTGCAACACTAAGTGTCAGTATTCGAATCAACAAGTCCGGTTCCTGGGTCGAAAGTGACTTTTTTGCATTTCAAATGAGTTTTATCGAATAAAGTGTTATTTCCTAGTCTCTGAATTTCCTATAAACAAGATAATTTTCAGCTAAGTCTGTTTAGAAATGAGCTTAACAGAGGAAATGCAATGATCTGACGTAATGAACCTTTACAGTTTCGATTTATACATCGAAATAGCGTAGTCTTCCTAGTAGCCAATGGTGTTCCTTGTGGCATCTGACATTTTAGCCTGTGGGTGTGGACAAGTCTTGGCCAGGTTTTGGTCCAAAGTTTTTCAAAAACGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>206 200 158 158 95 75 66 23 19</canonical_bands>
                <polymorphic_bands>206 200 158 158 98 95 66 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAATCTTTCAGAAAATCCAAGT</pcr_primer_p1>
		<pcr_primer_p2>CCACCACAGTTGAATTACTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATACTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAATCTAGTTAACGTGTCTCCTGGAGTCATAATTTTCGGACATGTGCTCTGGCAATTCGTGCATGGAGCACCTGTTTTTATTTATATCGCTTTGAATGATATGATAAGAAAACGGTTTTTTGCAATGATAAAAGTCCAGAAAAAAAGTAATTCAACTGTGGTGG</canonical_amplicon>
		<polymorphic_amplicon>AGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATACTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAATCTAGTTAACGTGTCTCCTGGAGTCATWATTTTCGGACATGTGCTCTGGCAATTCGTGCATGGAGCACCTGTTTTTATTTATATCGCTTTGAATGATATGATAAGAAAACGGTTTTTTGCAATGATAAAAGTCCAGAAAAAAAGTAATTCAACTGTGGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5083</snp_id>
        <super_contig>c002701403.Contig1</super_contig>
        <contig_pos>34006</contig_pos>
        <strand>+</strand>
        <context>AGCTGAGAAC[A/C]CTAAACCAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACGGATATTCTCGATGAGCTGTGGTCGGGAATTCGTCAGGAGCTGAGAAC</left_flank>
        <right_flank>CTAAACCAGGAGTCCCTGTTGGATATGATGTATGTGCAACGACGAGCTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCTAGGATCCTGAGTCTTTCGATATTCAGACCCTGGATCCTTCGATCATAGGTCCTAGATTCCCGAATCCGAGGGTCCTAGGGTCCTAGGATCCTAAATTTCTAGACACCTAGATCTTCGGAGTCTGAATCCCAACGGTCCAGAAACCTAGGACCGTGAATTCTTGAATCCTCGGACCTTCGGAATCTGAATTCCTTAATCCCAGAACCTCGAACCCCAAATCCCTAATTTCCCAAATAATTCCAGGACACCGCAATGTTCTACTGTAAATCGATCAACGACAACGCGCTCTTCCTCGAGACAATGTCGGAAAAACGAGAGCTCGATCCAGACTGCGCCGCGCATATCCCATCGGACGATGGCTCCGACTTCTGGATAATTCTTACTGTAGACTCTCATATCCACAGTATCGACGTCCACTTCTGCCAACGATACGACGGCCAACACACGGATATTCTCGATGAGCTGTGGTCGGGAATTCGTCAGGAGCTGAGAACCCTAAACCAGGAGTCCCTGTTGGATATGATGTATGTGCAACGACGAGCTGATAAGCTGCTGATCGCTGAATCTCGAAAAATCGCAGCGTTCGAGGTGGAGAAATCGGATAGTGGCATTCGGACTTTGACGAAAAAGCAACAGTTGAAACAGGCGGCGGCGAATGGCGGACTGGTTCATGAGGACTTGTATTACTACTTCCCCGAGCGATATTTTGGATGCAAATTGCAGAGGGAGATATGGTAAGGGCTAAAAATGAGCGAAAAACTAGGTAAAAAATGACCGAGACTTGACGAGACTCGGCGAGACTAAGCTTGGAATCGACGAGACCCGACGAGACTAGGCTAAAAATTGTTGAGACTGGATGAGACCAAGCTAGAACGGTTCGACATTTGGCCGAGACTAGACTAGAAATAGACGGGACCTAACGAAACTAGGCTAGAAATCACCGAAACTTAGCGAGACTATGCTAAAATAGGCCGAGACTCAACGAGACTACGCTA</canonical>
            <polymorphic>ATTCTAGGATCCTGAGTCTTTCGATATTCAGACCCTGGATCCTTCGATCATAGGTCCTAGATTCCCGAATCCGAGGGTCCTAGGGTCCTAGGATCCTAAATTTCTAGACACCTAGATCTTCGGAGTCTGAATCCCAACGGTCCAGAAACCTAGGACCGTGAATTCTTGAATCCTCGGACCTTCGGAATCTGAATTCCTTAATCCCAGAACCTCGAACCCCAAATCCCTAATTTCCCAAATAATTCCAGGACACCGCAATGTTCTACTGTAAATCGATCAACGACAACGCGCTCTTCCTCGAGACAATGTCGGAAAAACGAGAGCTCGATCCAGACTGCGCCGCGCATATCCCATCGGACGATGGCTCCGACTTCTGGATAATTCTTACTGTAGACTCTCATATCCACAGTATCGACGTCCACTTCTGCCAACGATACGACGGCCAACACACGGATATTCTCGATGAGCTGTGGTCGGGAATTCGTCAGGAGCTGAGAACMCTAAACCAGGAGTCCCTGTTGGATATGATGTATGTGCAACGACGAGCTGATAAGCTGCTGATCGCTGAATCTCGAAAAATCGCAGCGTTCGAGGTGGAGAAATCGGATAGTGGCATTCGGACTTTGACGAAAAAGCAACAGTTGAAACAGGCGGCGGCGAATGGCGGACTGGTTCATGAGGACTTGTATTACTACTTCCCCGAGCGATATTTTGGATGCAAATTGCAGAGGGAGATATGGTAAGGGCTAAAAATGAGCGAAAAACTAGGTAAAAAATGACCGAGACTTGACGAGACTCGGCGAGACTAAGCTTGGAATCGACGAGACCCGACGAGACTAGGCTAAAAATTGTTGAGACTGGATGAGACCAAGCTAGAACGGTTCGACATTTGGCCGAGACTAGACTAGAAATAGACGGGACCTAACGAAACTAGGCTAGAAATCACCGAAACTTAGCGAGACTATGCTAAAATAGGCCGAGACTCAACGAGACTACGCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>494 373 76 57</canonical_bands>
                <polymorphic_bands>551 373 76</polymorphic_bands>
            </assay>
            <assay>
                <site>CCTNNNNNAGG</site>
                <isoschizomers>
                    <enzyme>BstENI</enzyme>
                    <enzyme>EcoNI</enzyme>
                    <enzyme>XagI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGACTTCTGGATAATTCTTACTG</pcr_primer_p1>
		<pcr_primer_p2>AATGCCACTATCCGATTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGACTTCTGGATAATTCTTACTGTAGACTCTCATATCCACAGTATCGACGTCCACTTCTGCCAACGATACGACGGCCAACACACGGATATTCTCGATGAGCTGTGGTCGGGAATTCGTCAGGAGCTGAGAACCCTAAACCAGGAGTCCCTGTTGGATATGATGTATGTGCAACGACGAGCTGATAAGCTGCTGATCGCTGAATCTCGAAAAATCGCAGCGTTCGAGGTGGAGAAATCGGATAGTGGCATT</canonical_amplicon>
		<polymorphic_amplicon>CGACTTCTGGATAATTCTTACTGTAGACTCTCATATCCACAGTATCGACGTCCACTTCTGCCAACGATACGACGGCCAACACACGGATATTCTCGATGAGCTGTGGTCGGGAATTCGTCAGGAGCTGAGAACMCTAAACCAGGAGTCCCTGTTGGATATGATGTATGTGCAACGACGAGCTGATAAGCTGCTGATCGCTGAATCTCGAAAAATCGCAGCGTTCGAGGTGGAGAAATCGGATAGTGGCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5084</snp_id>
        <super_contig>c002701403.Contig1</super_contig>
        <contig_pos>33902</contig_pos>
        <strand>+</strand>
        <context>TACTGTAGAC[C/T]CTCATATCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATATCCCATCGGACGATGGCTCCGACTTCTGGATAATTCTTACTGTAGAC</left_flank>
        <right_flank>CTCATATCCACAGTATCGACGTCCACTTCTGCCAACGATACGACGGCCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCGGTTTTTCATAGATACCTTGCAGACATCCGGACACTTGGACAGAGAGAAAAATGAATGGGTTACTGGATTCCTGGAATCCTGGTTTCCTAGATTCCTGGATTCTAGGATCCTGAGTCTTTCGATATTCAGACCCTGGATCCTTCGATCATAGGTCCTAGATTCCCGAATCCGAGGGTCCTAGGGTCCTAGGATCCTAAATTTCTAGACACCTAGATCTTCGGAGTCTGAATCCCAACGGTCCAGAAACCTAGGACCGTGAATTCTTGAATCCTCGGACCTTCGGAATCTGAATTCCTTAATCCCAGAACCTCGAACCCCAAATCCCTAATTTCCCAAATAATTCCAGGACACCGCAATGTTCTACTGTAAATCGATCAACGACAACGCGCTCTTCCTCGAGACAATGTCGGAAAAACGAGAGCTCGATCCAGACTGCGCCGCGCATATCCCATCGGACGATGGCTCCGACTTCTGGATAATTCTTACTGTAGACTCTCATATCCACAGTATCGACGTCCACTTCTGCCAACGATACGACGGCCAACACACGGATATTCTCGATGAGCTGTGGTCGGGAATTCGTCAGGAGCTGAGAACCCTAAACCAGGAGTCCCTGTTGGATATGATGTATGTGCAACGACGAGCTGATAAGCTGCTGATCGCTGAATCTCGAAAAATCGCAGCGTTCGAGGTGGAGAAATCGGATAGTGGCATTCGGACTTTGACGAAAAAGCAACAGTTGAAACAGGCGGCGGCGAATGGCGGACTGGTTCATGAGGACTTGTATTACTACTTCCCCGAGCGATATTTTGGATGCAAATTGCAGAGGGAGATATGGTAAGGGCTAAAAATGAGCGAAAAACTAGGTAAAAAATGACCGAGACTTGACGAGACTCGGCGAGACTAAGCTTGGAATCGACGAGACCCGACGAGACTAGGCTAAAAATTGTTGAGACTGGATGAGACCAAGCTAGAACGGTTCGACATTTGGCCG</canonical>
            <polymorphic>TTTTCGGTTTTTCATAGATACCTTGCAGACATCCGGACACTTGGACAGAGAGAAAAATGAATGGGTTACTGGATTCCTGGAATCCTGGTTTCCTAGATTCCTGGATTCTAGGATCCTGAGTCTTTCGATATTCAGACCCTGGATCCTTCGATCATAGGTCCTAGATTCCCGAATCCGAGGGTCCTAGGGTCCTAGGATCCTAAATTTCTAGACACCTAGATCTTCGGAGTCTGAATCCCAACGGTCCAGAAACCTAGGACCGTGAATTCTTGAATCCTCGGACCTTCGGAATCTGAATTCCTTAATCCCAGAACCTCGAACCCCAAATCCCTAATTTCCCAAATAATTCCAGGACACCGCAATGTTCTACTGTAAATCGATCAACGACAACGCGCTCTTCCTCGAGACAATGTCGGAAAAACGAGAGCTCGATCCAGACTGCGCCGCGCATATCCCATCGGACGATGGCTCCGACTTCTGGATAATTCTTACTGTAGACYCTCATATCCACAGTATCGACGTCCACTTCTGCCAACGATACGACGGCCAACACACGGATATTCTCGATGAGCTGTGGTCGGGAATTCGTCAGGAGCTGAGAACCCTAAACCAGGAGTCCCTGTTGGATATGATGTATGTGCAACGACGAGCTGATAAGCTGCTGATCGCTGAATCTCGAAAAATCGCAGCGTTCGAGGTGGAGAAATCGGATAGTGGCATTCGGACTTTGACGAAAAAGCAACAGTTGAAACAGGCGGCGGCGAATGGCGGACTGGTTCATGAGGACTTGTATTACTACTTCCCCGAGCGATATTTTGGATGCAAATTGCAGAGGGAGATATGGTAAGGGCTAAAAATGAGCGAAAAACTAGGTAAAAAATGACCGAGACTTGACGAGACTCGGCGAGACTAAGCTTGGAATCGACGAGACCCGACGAGACTAGGCTAAAAATTGTTGAGACTGGATGAGACCAAGCTAGAACGGTTCGACATTTGGCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>227 208 117 81 72 57 56 46 39 21 17 16 14 8 8 7 6</canonical_bands>
                <polymorphic_bands>325 227 81 72 57 56 46 39 21 17 16 14 8 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCCTAATTTCCCAAATAATTC</pcr_primer_p1>
		<pcr_primer_p2>ACCACAGCTCATCGAGAATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCCCTAATTTCCCAAATAATTCCAGGACACCGCAATGTTCTACTGTAAATCGATCAACGACAACGCGCTCTTCCTCGAGACAATGTCGGAAAAACGAGAGCTCGATCCAGACTGCGCCGCGCATATCCCATCGGACGATGGCTCCGACTTCTGGATAATTCTTACTGTAGACTCTCATATCCACAGTATCGACGTCCACTTCTGCCAACGATACGACGGCCAACACACGGATATTCTCGATGAGCTGTGGT</canonical_amplicon>
		<polymorphic_amplicon>TCCCTAATTTCCCAAATAATTCCAGGACACCGCAATGTTCTACTGTAAATCGATCAACGACAACGCGCTCTTCCTCGAGACAATGTCGGAAAAACGAGAGCTCGATCCAGACTGCGCCGCGCATATCCCATCGGACGATGGCTCCGACTTCTGGATAATTCTTACTGTAGACYCTCATATCCACAGTATCGACGTCCACTTCTGCCAACGATACGACGGCCAACACACGGATATTCTCGATGAGCTGTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5088</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>1944</contig_pos>
        <strand></strand>
        <context>CCCGAAAAAA[G/A]CAATATTTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAAAGAGAGGGGAAAAACTTTTTCCTCCTCATTTTTCCCCCCGAAAAAA</left_flank>
        <right_flank>CAATATTTACTCAGTCGGAGAGCTCATCTGAATGGACCATGTGACCAGTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAGCGTCTTTCAGCTTTTAACTTTGAGCTCTATTATCTTACTTCCTGTAACAGATATTAAAAAGTGCTTAACTGATAAATTGTTTATCATGATATCAGCTACATTTTATTAGTTGACACATTTTTGATATCTCTCATAGGAATGAAGATAAAGCTGGTAAAAGCAAAGCCCCCCCCCCCTTCCAAAGTAGGGGGGGGGGAGGTCTCTACTATTGTCGTTGAAGTCAATTATCTCACTTTCTGTAAAAGATATCAAAAAGTGGTCAACTGATAAAGTACTTATCTTTTTATCAGTTACATTTTATCACCTGACAACTTTTTGATATCTTCCACAGGAATTGAGATATGGGAGCTCTTCTATTACAGGTTTTACGGTCACTAGAAAAATTGCCTTTTTTTGGAAAATATGCTCAAAAAAAGCAAAAAAATTGTTTTTTGATTCCTCAAAAAAAAAGAGAGGGGAAAAACTTTTTCCTCCTCATTTTTCCCCCCGAAAAAAGCAATATTTACTCAGTCGGAGAGCTCATCTGAATGGACCATGTGACCAGTTTTTTCTTTTCATTATTTTTACCTTTTTCGTCTGGAGGCCTTCATATGAGTTCAAAAATCTTATAAAAATTTATTATTTTTAAGGTTTTGAAATCCTTTAAAAATGTTTGAATTTTACTTTTTTTCATTATAAATCTCATACCGTAGACACTCTAATAGAACGTCACCCGAATCATCGTCAAATTTGAGCCCATGTATCTCATTTTCTGTAAGAGATATCAAAAAGTGATCAATTGATAAAATGTAGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATATCTCTCAAAAGAAGTGAGATATATATGCTGAAAGTTTACGGTCCTGGTGGCGTTCTATTAGAGTGTTTACTGTAATACGATTTTTCACAATTTTCTTGTATTTTAAATTCTAAAAAAATTAAAACTCGATTTCTAGAATTTTTGAAATTATGATCTATTT</canonical>
            <polymorphic>GTAGCGTCTTTCAGCTTTTAACTTTGAGCTCTATTATCTTACTTCCTGTAACAGATATTAAAAAGTGCTTAACTGATAAATTGTTTATCATGATATCAGCTACATTTTATTAGTTGACACATTTTTGATATCTCTCATAGGAATGAAGATAAAGCTGGTAAAAGCAAAGCCCCCCCCCCCTTCCAAAGTAGGGGGGGGGGAGGTCTCTACTATTGTCGTTGAAGTCAATTATCTCACTTTCTGTAAAAGATATCAAAAAGTGGTCAACTGATAAAGTACTTATCTTTTTATCAGTTACATTTTATCACCTGACAACTTTTTGATATCTTCCACAGGAATTGAGATATGGGAGCTCTTCTATTACAGGTTTTACGGTCACTAGAAAAATTGCCTTTTTTTGGAAAATATGCTCAAAAAAAGCAAAAAAATTGTTTTTTGATTCCTCAAAAAAAAAGAGAGGGGAAAAACTTTTTCCTCCTCATTTTTCCCCCCGAAAAAARCAATATTTACTCAGTCGGAGAGCTCATCTGAATGGACCATGTGACCAGTTTTTTCTTTTCATTATTTTTACCTTTTTCGTCTGGAGGCCTTCATATGAGTTCAAAAATCTTATAAAAATTTATTATTTTTAAGGTTTTGAAATCCTTTAAAAATGTTTGAATTTTACTTTTTTTCATTATAAATCTCATACCGTAGACACTCTAATAGAACGTCACCCGAATCATCGTCAAATTTGAGCCCATGTATCTCATTTTCTGTAAGAGATATCAAAAAGTGATCAATTGATAAAATGTAGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATATCTCTCAAAAGAAGTGAGATATATATGCTGAAAGTTTACGGTCCTGGTGGCGTTCTATTAGAGTGTTTACTGTAATACGATTTTTCACAATTTTCTTGTATTTTAAATTCTAAAAAAATTAAAACTCGATTTCTAGAATTTTTGAAATTATGATCTATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGAGAGGGGAAAAACTT</pcr_primer_p1>
		<pcr_primer_p2>CCAGACGAAAAAGGTAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>135</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGAGAGGGGAAAAACTTTTTCCTCCTCATTTTTCCCCCCGAAAAAAGCAATATTTACTCAGTCGGAGAGCTCATCTGAATGGACCATGTGACCAGTTTTTTCTTTTCATTATTTTTACCTTTTTCGTCTGG</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGAGAGGGGAAAAACTTTTTCCTCCTCATTTTTCCCCCCGAAAAAARCAATATTTACTCAGTCGGAGAGCTCATCTGAATGGACCATGTGACCAGTTTTTTCTTTTCATTATTTTTACCTTTTTCGTCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5091</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>55783</contig_pos>
        <strand>+</strand>
        <context>TGAAGCTAGC[A/T]TRAGTTGGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAATTGAAATTGAAGTTGACTAGAAGAATTACAGTAAATTTGAAGCTAGC</left_flank>
        <right_flank>TGAGTTGGGTGAAAATCAACCGATTTATACGAATTTTGGCTTACAATCGC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGGTGCTTTTAAAGTTCATCATGTTGTTCACAGGTACAGTAATCTTACTAAAATTTTGGAAAAAAAAGTGTTTTTGAAGTAAAAAGTTACTGTATTTCCTGTAATTGGCCTGTCCCAGCAAAGCAGTTGTCTTTGAACCTATTTATTTCGGTTACTGTAAGAGATATCAAAATGCGGTTAATTGATAAAATGTTTATCATTATATCAGCTACATTTTATCAGTCGAACAATTTTTCATATCTATAACATGAATCGAGATAAACTAGGTCAAATGTGGGAGGAGTCACGCCTCTGTAAGCTAAGCTCGATTAGCGCCGACTTTAACCCAGTGTATCATGGTTACTGTAAGAGGTATCAAAAATTTGTCAACTAATAAATGATAGCTCTTATTATGATAAATGTTTTATCAGTTAACAAATTTTTGATATCTTTTACAGGAACTGAGATAATTGAAATTGAAGTTGACTAGAAGAATTACAGTAAATTTGAAGCTAGCATGAGTTGGGTGAAAATCAACCGATTTATACGAATTTTGGCTTACAATCGCTTGAAAATATTACTGTACTTTATTCCAGAACCTTCGTCATCAAAATCCTCCACGGATAGCTACCGTATCCGATGCTACCGTCTCAAATACTGCGAATTGCTCAGGAAATACATAATGGCTCAAATTCCGGACCCCGAGAAGCGGATAGCGAGAATTGCCGAGTTGCTGAAGATTGTAGAATCTGTTAGAGTGAGTTTAGCTACAGTAATCCTGAAAAAAATGTTTTGAAAACTTTTTTTAAATTTTTCGAAAAGCTCCAACTCTGCTCAAAAAGAAACAATCTTCAAAAAAAAATTTTTGTAAAAAATTTCAAATTTTCTACAGTATCTTACTACAGTACCCCTATTCTAGAACACCGCGACATATTTGGACAAATGGATGACCATGTTCTACACCTCCAACACCTGCCAAATGAATGATGTCTTGGTTTACGATTTCCATGTTAGGACC</canonical>
            <polymorphic>AATTGGTGCTTTTAAAGTTCATCATGTTGTTCACAGGTACAGTAATCTTACTAAAATTTTGGAAAAAAAAGTGTTTTTGAAGTAAAAAGTTACTGTATTTCCTGTAATTGGCCTGTCCCAGCAAAGCAGTTGTCTTTGAACCTATTTATTTCGGTTACTGTAAGAGATATCAAAATGCGGTTAATTGATAAAATGTTTATCATTATATCAGCTACATTTTATCAGTCGAACAATTTTTCATATCTATAACATGAATCGAGATAAACTAGGTCAAATGTGGGAGGAGTCACGCCTCTGTAAGCTAAGCTCGATTAGCGCCGACTTTAACCCAGTGTATCATGGTTACTGTAAGAGGTATCAAAAATTTGTCAACTAATAAATGATAGCTCTTATTATGATAAATGTTTTATCAGTTAACAAATTTTTGATATCTTTTACAGGAACTGAGATAATTGAAATTGAAGTTGACTAGAAGAATTACAGTAAATTTGAAGCTAGCWTGAGTTGGGTGAAAATCAACCGATTTATACGAATTTTGGCTTACAATCGCTTGAAAATATTACTGTACTTTATTCCAGAACCTTCGTCATCAAAATCCTCCACGGATAGCTACCGTATCCGATGCTACCGTCTCAAATACTGCGAATTGCTCAGGAAATACATAATGGCTCAAATTCCGGACCCCGAGAAGCGGATAGCGAGAATTGCCGAGTTGCTGAAGATTGTAGAATCTGTTAGAGTGAGTTTAGCTACAGTAATCCTGAAAAAAATGTTTTGAAAACTTTTTTTAAATTTTTCGAAAAGCTCCAACTCTGCTCAAAAAGAAACAATCTTCAAAAAAAAATTTTTGTAAAAAATTTCAAATTTTCTACAGTATCTTACTACAGTACCCCTATTCTAGAACACCGCGACATATTTGGACAAATGGATGACCATGTTCTACACCTCCAACACCTGCCAAATGAATGATGTCTTGGTTTACGATTTCCATGTTAGGACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>435 227 161 88 55 23 11</canonical_bands>
                <polymorphic_bands>596 227 88 55 23 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCACGCCTCTGTAAGCTAAG</pcr_primer_p1>
		<pcr_primer_p2>GAAGGTTCTGGAATAAAGTACAGT</pcr_primer_p2>
		<pcr_amplicon_size>299</pcr_amplicon_size>
		<canonical_amplicon>TCACGCCTCTGTAAGCTAAGCTCGATTAGCGCCGACTTTAACCCAGTGTATCATGGTTACTGTAAGAGGTATCAAAAATTTGTCAACTAATAAATGATAGCTCTTATTATGATAAATGTTTTATCAGTTAACAAATTTTTGATATCTTTTACAGGAACTGAGATAATTGAAATTGAAGTTGACTAGAAGAATTACAGTAAATTTGAAGCTAGCATGAGTTGGGTGAAAATCAACCGATTTATACGAATTTTGGCTTACAATCGCTTGAAAATATTACTGTACTTTATTCCAGAACCTTC</canonical_amplicon>
		<polymorphic_amplicon>TCACGCCTCTGTAAGCTAAGCTCGATTAGCGCCGACTTTAACCCAGTGTATCATGGTTACTGTAAGAGGTATCAAAAATTTGTCAACTAATAAATGATAGCTCTTATTATGATAAATGTTTTATCAGTTAACAAATTTTTGATATCTTTTACAGGAACTGAGATAATTGAAATTGAAGTTGACTAGAAGAATTACAGTAAATTTGAAGCTAGCWTGAGTTGGGTGAAAATCAACCGATTTATACGAATTTTGGCTTACAATCGCTTGAAAATATTACTGTACTTTATTCCAGAACCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5092</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>55785</contig_pos>
        <strand>+</strand>
        <context>AAGCTAGCWT[A/G]AGTTGGGTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGAAATTGAAGTTGACTAGAAGAATTACAGTAAATTTGAAGCTAGCAT</left_flank>
        <right_flank>AGTTGGGTGAAAATCAACCGATTTATACGAATTTTGGCTTACAATCGCTT</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGTGCTTTTAAAGTTCATCATGTTGTTCACAGGTACAGTAATCTTACTAAAATTTTGGAAAAAAAAGTGTTTTTGAAGTAAAAAGTTACTGTATTTCCTGTAATTGGCCTGTCCCAGCAAAGCAGTTGTCTTTGAACCTATTTATTTCGGTTACTGTAAGAGATATCAAAATGCGGTTAATTGATAAAATGTTTATCATTATATCAGCTACATTTTATCAGTCGAACAATTTTTCATATCTATAACATGAATCGAGATAAACTAGGTCAAATGTGGGAGGAGTCACGCCTCTGTAAGCTAAGCTCGATTAGCGCCGACTTTAACCCAGTGTATCATGGTTACTGTAAGAGGTATCAAAAATTTGTCAACTAATAAATGATAGCTCTTATTATGATAAATGTTTTATCAGTTAACAAATTTTTGATATCTTTTACAGGAACTGAGATAATTGAAATTGAAGTTGACTAGAAGAATTACAGTAAATTTGAAGCTAGCATGAGTTGGGTGAAAATCAACCGATTTATACGAATTTTGGCTTACAATCGCTTGAAAATATTACTGTACTTTATTCCAGAACCTTCGTCATCAAAATCCTCCACGGATAGCTACCGTATCCGATGCTACCGTCTCAAATACTGCGAATTGCTCAGGAAATACATAATGGCTCAAATTCCGGACCCCGAGAAGCGGATAGCGAGAATTGCCGAGTTGCTGAAGATTGTAGAATCTGTTAGAGTGAGTTTAGCTACAGTAATCCTGAAAAAAATGTTTTGAAAACTTTTTTTAAATTTTTCGAAAAGCTCCAACTCTGCTCAAAAAGAAACAATCTTCAAAAAAAAATTTTTGTAAAAAATTTCAAATTTTCTACAGTATCTTACTACAGTACCCCTATTCTAGAACACCGCGACATATTTGGACAAATGGATGACCATGTTCTACACCTCCAACACCTGCCAAATGAATGATGTCTTGGTTTACGATTTCCATGTTAGGACCTA</canonical>
            <polymorphic>TTGGTGCTTTTAAAGTTCATCATGTTGTTCACAGGTACAGTAATCTTACTAAAATTTTGGAAAAAAAAGTGTTTTTGAAGTAAAAAGTTACTGTATTTCCTGTAATTGGCCTGTCCCAGCAAAGCAGTTGTCTTTGAACCTATTTATTTCGGTTACTGTAAGAGATATCAAAATGCGGTTAATTGATAAAATGTTTATCATTATATCAGCTACATTTTATCAGTCGAACAATTTTTCATATCTATAACATGAATCGAGATAAACTAGGTCAAATGTGGGAGGAGTCACGCCTCTGTAAGCTAAGCTCGATTAGCGCCGACTTTAACCCAGTGTATCATGGTTACTGTAAGAGGTATCAAAAATTTGTCAACTAATAAATGATAGCTCTTATTATGATAAATGTTTTATCAGTTAACAAATTTTTGATATCTTTTACAGGAACTGAGATAATTGAAATTGAAGTTGACTAGAAGAATTACAGTAAATTTGAAGCTAGCATRAGTTGGGTGAAAATCAACCGATTTATACGAATTTTGGCTTACAATCGCTTGAAAATATTACTGTACTTTATTCCAGAACCTTCGTCATCAAAATCCTCCACGGATAGCTACCGTATCCGATGCTACCGTCTCAAATACTGCGAATTGCTCAGGAAATACATAATGGCTCAAATTCCGGACCCCGAGAAGCGGATAGCGAGAATTGCCGAGTTGCTGAAGATTGTAGAATCTGTTAGAGTGAGTTTAGCTACAGTAATCCTGAAAAAAATGTTTTGAAAACTTTTTTTAAATTTTTCGAAAAGCTCCAACTCTGCTCAAAAAGAAACAATCTTCAAAAAAAAATTTTTGTAAAAAATTTCAAATTTTCTACAGTATCTTACTACAGTACCCCTATTCTAGAACACCGCGACATATTTGGACAAATGGATGACCATGTTCTACACCTCCAACACCTGCCAAATGAATGATGTCTTGGTTTACGATTTCCATGTTAGGACCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>435 227 161 88 55 21 13</canonical_bands>
                <polymorphic_bands>596 227 88 55 21 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCACGCCTCTGTAAGCTAAG</pcr_primer_p1>
		<pcr_primer_p2>GAAGGTTCTGGAATAAAGTACAGT</pcr_primer_p2>
		<pcr_amplicon_size>299</pcr_amplicon_size>
		<canonical_amplicon>TCACGCCTCTGTAAGCTAAGCTCGATTAGCGCCGACTTTAACCCAGTGTATCATGGTTACTGTAAGAGGTATCAAAAATTTGTCAACTAATAAATGATAGCTCTTATTATGATAAATGTTTTATCAGTTAACAAATTTTTGATATCTTTTACAGGAACTGAGATAATTGAAATTGAAGTTGACTAGAAGAATTACAGTAAATTTGAAGCTAGCATGAGTTGGGTGAAAATCAACCGATTTATACGAATTTTGGCTTACAATCGCTTGAAAATATTACTGTACTTTATTCCAGAACCTTC</canonical_amplicon>
		<polymorphic_amplicon>TCACGCCTCTGTAAGCTAAGCTCGATTAGCGCCGACTTTAACCCAGTGTATCATGGTTACTGTAAGAGGTATCAAAAATTTGTCAACTAATAAATGATAGCTCTTATTATGATAAATGTTTTATCAGTTAACAAATTTTTGATATCTTTTACAGGAACTGAGATAATTGAAATTGAAGTTGACTAGAAGAATTACAGTAAATTTGAAGCTAGCATRAGTTGGGTGAAAATCAACCGATTTATACGAATTTTGGCTTACAATCGCTTGAAAATATTACTGTACTTTATTCCAGAACCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5093</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>55808</contig_pos>
        <strand>+</strand>
        <context>ATCAACCGAT[G/T]TATACGAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAATTACAGTAAATTTGAAGCTAGCATGAGTTGGGTGAAAATCAACCGAT</left_flank>
        <right_flank>TATACGAATTTTGGCTTACAATCGCTTGAAAATATTACTGTACTTTATTC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGTTCACAGGTACAGTAATCTTACTAAAATTTTGGAAAAAAAAGTGTTTTTGAAGTAAAAAGTTACTGTATTTCCTGTAATTGGCCTGTCCCAGCAAAGCAGTTGTCTTTGAACCTATTTATTTCGGTTACTGTAAGAGATATCAAAATGCGGTTAATTGATAAAATGTTTATCATTATATCAGCTACATTTTATCAGTCGAACAATTTTTCATATCTATAACATGAATCGAGATAAACTAGGTCAAATGTGGGAGGAGTCACGCCTCTGTAAGCTAAGCTCGATTAGCGCCGACTTTAACCCAGTGTATCATGGTTACTGTAAGAGGTATCAAAAATTTGTCAACTAATAAATGATAGCTCTTATTATGATAAATGTTTTATCAGTTAACAAATTTTTGATATCTTTTACAGGAACTGAGATAATTGAAATTGAAGTTGACTAGAAGAATTACAGTAAATTTGAAGCTAGCATGAGTTGGGTGAAAATCAACCGATTTATACGAATTTTGGCTTACAATCGCTTGAAAATATTACTGTACTTTATTCCAGAACCTTCGTCATCAAAATCCTCCACGGATAGCTACCGTATCCGATGCTACCGTCTCAAATACTGCGAATTGCTCAGGAAATACATAATGGCTCAAATTCCGGACCCCGAGAAGCGGATAGCGAGAATTGCCGAGTTGCTGAAGATTGTAGAATCTGTTAGAGTGAGTTTAGCTACAGTAATCCTGAAAAAAATGTTTTGAAAACTTTTTTTAAATTTTTCGAAAAGCTCCAACTCTGCTCAAAAAGAAACAATCTTCAAAAAAAAATTTTTGTAAAAAATTTCAAATTTTCTACAGTATCTTACTACAGTACCCCTATTCTAGAACACCGCGACATATTTGGACAAATGGATGACCATGTTCTACACCTCCAACACCTGCCAAATGAATGATGTCTTGGTTTACGATTTCCATGTTAGGACCTATCGCAATGGGGCGAACTTGCCAA</canonical>
            <polymorphic>GTTGTTCACAGGTACAGTAATCTTACTAAAATTTTGGAAAAAAAAGTGTTTTTGAAGTAAAAAGTTACTGTATTTCCTGTAATTGGCCTGTCCCAGCAAAGCAGTTGTCTTTGAACCTATTTATTTCGGTTACTGTAAGAGATATCAAAATGCGGTTAATTGATAAAATGTTTATCATTATATCAGCTACATTTTATCAGTCGAACAATTTTTCATATCTATAACATGAATCGAGATAAACTAGGTCAAATGTGGGAGGAGTCACGCCTCTGTAAGCTAAGCTCGATTAGCGCCGACTTTAACCCAGTGTATCATGGTTACTGTAAGAGGTATCAAAAATTTGTCAACTAATAAATGATAGCTCTTATTATGATAAATGTTTTATCAGTTAACAAATTTTTGATATCTTTTACAGGAACTGAGATAATTGAAATTGAAGTTGACTAGAAGAATTACAGTAAATTTGAAGCTAGCATGAGTTGGGTGAAAATCAACCGATKTATACGAATTTTGGCTTACAATCGCTTGAAAATATTACTGTACTTTATTCCAGAACCTTCGTCATCAAAATCCTCCACGGATAGCTACCGTATCCGATGCTACCGTCTCAAATACTGCGAATTGCTCAGGAAATACATAATGGCTCAAATTCCGGACCCCGAGAAGCGGATAGCGAGAATTGCCGAGTTGCTGAAGATTGTAGAATCTGTTAGAGTGAGTTTAGCTACAGTAATCCTGAAAAAAATGTTTTGAAAACTTTTTTTAAATTTTTCGAAAAGCTCCAACTCTGCTCAAAAAGAAACAATCTTCAAAAAAAAATTTTTGTAAAAAATTTCAAATTTTCTACAGTATCTTACTACAGTACCCCTATTCTAGAACACCGCGACATATTTGGACAAATGGATGACCATGTTCTACACCTCCAACACCTGCCAAATGAATGATGTCTTGGTTTACGATTTCCATGTTAGGACCTATCGCAATGGGGCGAACTTGCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCACGCCTCTGTAAGCTAAG</pcr_primer_p1>
		<pcr_primer_p2>GAAGGTTCTGGAATAAAGTACAGT</pcr_primer_p2>
		<pcr_amplicon_size>299</pcr_amplicon_size>
		<canonical_amplicon>TCACGCCTCTGTAAGCTAAGCTCGATTAGCGCCGACTTTAACCCAGTGTATCATGGTTACTGTAAGAGGTATCAAAAATTTGTCAACTAATAAATGATAGCTCTTATTATGATAAATGTTTTATCAGTTAACAAATTTTTGATATCTTTTACAGGAACTGAGATAATTGAAATTGAAGTTGACTAGAAGAATTACAGTAAATTTGAAGCTAGCATGAGTTGGGTGAAAATCAACCGATTTATACGAATTTTGGCTTACAATCGCTTGAAAATATTACTGTACTTTATTCCAGAACCTTC</canonical_amplicon>
		<polymorphic_amplicon>TCACGCCTCTGTAAGCTAAGCTCGATTAGCGCCGACTTTAACCCAGTGTATCATGGTTACTGTAAGAGGTATCAAAAATTTGTCAACTAATAAATGATAGCTCTTATTATGATAAATGTTTTATCAGTTAACAAATTTTTGATATCTTTTACAGGAACTGAGATAATTGAAATTGAAGTTGACTAGAAGAATTACAGTAAATTTGAAGCTAGCATGAGTTGGGTGAAAATCAACCGATKTATACGAATTTTGGCTTACAATCGCTTGAAAATATTACTGTACTTTATTCCAGAACCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5094</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>55836</contig_pos>
        <strand>+</strand>
        <context>ACAATCGCTT[C/G]AAAATATTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGTTGGGTGAAAATCAACCGATTTATACGAATTTTGGCTTACAATCGCTT</left_flank>
        <right_flank>AAAATATTACTGTACTTTATTCCAGAACCTTCGTCATCAAAATCCTCCAC</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTTGGAAAAAAAAGTGTTTTTGAAGTAAAAAGTTACTGTATTTCCTGTAATTGGCCTGTCCCAGCAAAGCAGTTGTCTTTGAACCTATTTATTTCGGTTACTGTAAGAGATATCAAAATGCGGTTAATTGATAAAATGTTTATCATTATATCAGCTACATTTTATCAGTCGAACAATTTTTCATATCTATAACATGAATCGAGATAAACTAGGTCAAATGTGGGAGGAGTCACGCCTCTGTAAGCTAAGCTCGATTAGCGCCGACTTTAACCCAGTGTATCATGGTTACTGTAAGAGGTATCAAAAATTTGTCAACTAATAAATGATAGCTCTTATTATGATAAATGTTTTATCAGTTAACAAATTTTTGATATCTTTTACAGGAACTGAGATAATTGAAATTGAAGTTGACTAGAAGAATTACAGTAAATTTGAAGCTAGCATGAGTTGGGTGAAAATCAACCGATTTATACGAATTTTGGCTTACAATCGCTTGAAAATATTACTGTACTTTATTCCAGAACCTTCGTCATCAAAATCCTCCACGGATAGCTACCGTATCCGATGCTACCGTCTCAAATACTGCGAATTGCTCAGGAAATACATAATGGCTCAAATTCCGGACCCCGAGAAGCGGATAGCGAGAATTGCCGAGTTGCTGAAGATTGTAGAATCTGTTAGAGTGAGTTTAGCTACAGTAATCCTGAAAAAAATGTTTTGAAAACTTTTTTTAAATTTTTCGAAAAGCTCCAACTCTGCTCAAAAAGAAACAATCTTCAAAAAAAAATTTTTGTAAAAAATTTCAAATTTTCTACAGTATCTTACTACAGTACCCCTATTCTAGAACACCGCGACATATTTGGACAAATGGATGACCATGTTCTACACCTCCAACACCTGCCAAATGAATGATGTCTTGGTTTACGATTTCCATGTTAGGACCTATCGCAATGGGGCGAACTTGCCAAATTTGTGCTTTCCTCCGAATGGCCTTCC</canonical>
            <polymorphic>AAATTTTGGAAAAAAAAGTGTTTTTGAAGTAAAAAGTTACTGTATTTCCTGTAATTGGCCTGTCCCAGCAAAGCAGTTGTCTTTGAACCTATTTATTTCGGTTACTGTAAGAGATATCAAAATGCGGTTAATTGATAAAATGTTTATCATTATATCAGCTACATTTTATCAGTCGAACAATTTTTCATATCTATAACATGAATCGAGATAAACTAGGTCAAATGTGGGAGGAGTCACGCCTCTGTAAGCTAAGCTCGATTAGCGCCGACTTTAACCCAGTGTATCATGGTTACTGTAAGAGGTATCAAAAATTTGTCAACTAATAAATGATAGCTCTTATTATGATAAATGTTTTATCAGTTAACAAATTTTTGATATCTTTTACAGGAACTGAGATAATTGAAATTGAAGTTGACTAGAAGAATTACAGTAAATTTGAAGCTAGCATGAGTTGGGTGAAAATCAACCGATTTATACGAATTTTGGCTTACAATCGCTTSAAAATATTACTGTACTTTATTCCAGAACCTTCGTCATCAAAATCCTCCACGGATAGCTACCGTATCCGATGCTACCGTCTCAAATACTGCGAATTGCTCAGGAAATACATAATGGCTCAAATTCCGGACCCCGAGAAGCGGATAGCGAGAATTGCCGAGTTGCTGAAGATTGTAGAATCTGTTAGAGTGAGTTTAGCTACAGTAATCCTGAAAAAAATGTTTTGAAAACTTTTTTTAAATTTTTCGAAAAGCTCCAACTCTGCTCAAAAAGAAACAATCTTCAAAAAAAAATTTTTGTAAAAAATTTCAAATTTTCTACAGTATCTTACTACAGTACCCCTATTCTAGAACACCGCGACATATTTGGACAAATGGATGACCATGTTCTACACCTCCAACACCTGCCAAATGAATGATGTCTTGGTTTACGATTTCCATGTTAGGACCTATCGCAATGGGGCGAACTTGCCAAATTTGTGCTTTCCTCCGAATGGCCTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGAATTACAGTAAATTTGAAGCTA</pcr_primer_p1>
		<pcr_primer_p2>GAATTTGAGCCATTATGTATTTC</pcr_primer_p2>
		<pcr_amplicon_size>206</pcr_amplicon_size>
		<canonical_amplicon>GAAGAATTACAGTAAATTTGAAGCTAGCATGAGTTGGGTGAAAATCAACCGATTTATACGAATTTTGGCTTACAATCGCTTGAAAATATTACTGTACTTTATTCCAGAACCTTCGTCATCAAAATCCTCCACGGATAGCTACCGTATCCGATGCTACCGTCTCAAATACTGCGAATTGCTCAGGAAATACATAATGGCTCAAATTC</canonical_amplicon>
		<polymorphic_amplicon>GAAGAATTACAGTAAATTTGAAGCTAGCATGAGTTGGGTGAAAATCAACCGATTTATACGAATTTTGGCTTACAATCGCTTSAAAATATTACTGTACTTTATTCCAGAACCTTCGTCATCAAAATCCTCCACGGATAGCTACCGTATCCGATGCTACCGTCTCAAATACTGCGAATTGCTCAGGAAATACATAATGGCTCAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5096</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>59428</contig_pos>
        <strand>+</strand>
        <context>GAATCCTCTC[A/T]CAAAACAGGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGCCAACTGGAAGGCAGCAGGGGCTACTGTAGATGCCAAGAATCCTCTC</left_flank>
        <right_flank>CAAAACAGGCCTACGCTCAGAAGAAGGCGTTGACCTTCATAGATTTCAGA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACAGTCTGAAACCCTTTAAAAACCAAGAAAACCCCAAAAATAGACCTAGAATTGAAACTTGCTCGTCAAATCTATTGCCTTGCACACAAGCTGTTTCCCCTAATTTCCCTTAACTTCCCTCCCCGGCGCCCTCCACCCTCCGCTCCCCCGCGCTCTCCTATACGCCCTCCACCTCCCTGTTTTCTCGTGTCCTCGGTAGTATAGTGGTGAGTATCCGCGTCTGTCACATGCGAGACCCGGGTTCAATACCCGGCCGGGGAGAAACCTTTTTTGCTTTTTTGATGAGCACTAATAAGTGATGGAACATGGTTTTTAGGTGTTTTTTAAATGATTTTTGGACATGGTAGGATGAATTTTCAGGCCAAATCCGACCATTTTCAGCTAACCACCAACGTCAACAAGCAAACCGCGAAGCCGGCCGCCAAAACCGTCATCACCAAATGGATTCCAGCCAACTGGAAGGCAGCAGGGGCTACTGTAGATGCCAAGAATCCTCTCACAAAACAGGCCTACGCTCAGAAGAAGGCGTTGACCTTCATAGATTTCAGATTTTCGCTTAAAAAGTACATCAACTATTTGTTTGTTCAAGCAGTTAGTACGAAATACTTGACTCAAGCGGAGGCGGATAACATGAAGAAAATGTATTGGGCTGCTGATACTAAAGCGGTCAATAATTTCACAATGACCACTCAGATCTTCATGGCTGATGCTTCAAAGGTTGGTGATTCTAAAACTGTTGAAATTCTATACATTACGGAAATTTGGAATTCTCATTATTAGTTTAGTCTCCTGGCAAATTTTCAAAGCGTTACGACCACTGGGAGCCGAGATACAGCCATTTGAATTTTCGGCGGCGCGGTCGCGTCGCGGCTCTTCCAAAACTTCAAAGGGCCGTATATCGGCTCCTAGTGGGTCAAACTGGCTGAAATTTTGTAAGAACAGTTATTTCAGCATGGCAAACATTTTGATGTAACAATTATCCTAAGATTCAAAAATCAG</canonical>
            <polymorphic>CACAGTCTGAAACCCTTTAAAAACCAAGAAAACCCCAAAAATAGACCTAGAATTGAAACTTGCTCGTCAAATCTATTGCCTTGCACACAAGCTGTTTCCCCTAATTTCCCTTAACTTCCCTCCCCGGCGCCCTCCACCCTCCGCTCCCCCGCGCTCTCCTATACGCCCTCCACCTCCCTGTTTTCTCGTGTCCTCGGTAGTATAGTGGTGAGTATCCGCGTCTGTCACATGCGAGACCCGGGTTCAATACCCGGCCGGGGAGAAACCTTTTTTGCTTTTTTGATGAGCACTAATAAGTGATGGAACATGGTTTTTAGGTGTTTTTTAAATGATTTTTGGACATGGTAGGATGAATTTTCAGGCCAAATCCGACCATTTTCAGCTAACCACCAACGTCAACAAGCAAACCGCGAAGCCGGCCGCCAAAACCGTCATCACCAAATGGATTCCAGCCAACTGGAAGGCAGCAGGGGCTACTGTAGATGCCAAGAATCCTCTCWCAAAACAGGCCTACGCTCAGAAGAAGGCGTTGACCTTCATAGATTTCAGATTTTCGCTTAAAAAGTACATCAACTATTTGTTTGTTCAAGCAGTTAGTACGAAATACTTGACTCAAGCGGAGGCGGATAACATGAAGAAAATGTATTGGGCTGCTGATACTAAAGCGGTCAATAATTTCACAATGACCACTCAGATCTTCATGGCTGATGCTTCAAAGGTTGGTGATTCTAAAACTGTTGAAATTCTATACATTACGGAAATTTGGAATTCTCATTATTAGTTTAGTCTCCTGGCAAATTTTCAAAGCGTTACGACCACTGGGAGCCGAGATACAGCCATTTGAATTTTCGGCGGCGCGGTCGCGTCGCGGCTCTTCCAAAACTTCAAAGGGCCGTATATCGGCTCCTAGTGGGTCAAACTGGCTGAAATTTTGTAAGAACAGTTATTTCAGCATGGCAAACATTTTGATGTAACAATTATCCTAAGATTCAAAAATCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>180 94 93 88 83 69 63 62 49 48 36 36 21 18 17 17 10 9 3 2 2</canonical_bands>
                <polymorphic_bands>243 94 93 88 83 69 62 49 48 36 36 21 18 17 17 10 9 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAATGATTTTTGGACATGGTAG</pcr_primer_p1>
		<pcr_primer_p2>TGATGTACTTTTTAAGCGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TAAATGATTTTTGGACATGGTAGGATGAATTTTCAGGCCAAATCCGACCATTTTCAGCTAACCACCAACGTCAACAAGCAAACCGCGAAGCCGGCCGCCAAAACCGTCATCACCAAATGGATTCCAGCCAACTGGAAGGCAGCAGGGGCTACTGTAGATGCCAAGAATCCTCTCACAAAACAGGCCTACGCTCAGAAGAAGGCGTTGACCTTCATAGATTTCAGATTTTCGCTTAAAAAGTACATCA</canonical_amplicon>
		<polymorphic_amplicon>TAAATGATTTTTGGACATGGTAGGATGAATTTTCAGGCCAAATCCGACCATTTTCAGCTAACCACCAACGTCAACAAGCAAACCGCGAAGCCGGCCGCCAAAACCGTCATCACCAAATGGATTCCAGCCAACTGGAAGGCAGCAGGGGCTACTGTAGATGCCAAGAATCCTCTCWCAAAACAGGCCTACGCTCAGAAGAAGGCGTTGACCTTCATAGATTTCAGATTTTCGCTTAAAAAGTACATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5097</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>59362</contig_pos>
        <strand>+</strand>
        <context>CAAAACCGTC[A/G]TCACCAAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAACCACCAACGTCAACAAGCAAACCGCGAAGCCGGCCGCCAAAACCGTC</left_flank>
        <right_flank>TCACCAAATGGATTCCAGCCAACTGGAAGGCAGCAGGGGCTACTGTAGAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTAACAATCGTTAAATGTGATGGAAAATAGCCCAACAATTGAAAAAAGGTTTCTAAAAGCAAAAACACAGTCTGAAACCCTTTAAAAACCAAGAAAACCCCAAAAATAGACCTAGAATTGAAACTTGCTCGTCAAATCTATTGCCTTGCACACAAGCTGTTTCCCCTAATTTCCCTTAACTTCCCTCCCCGGCGCCCTCCACCCTCCGCTCCCCCGCGCTCTCCTATACGCCCTCCACCTCCCTGTTTTCTCGTGTCCTCGGTAGTATAGTGGTGAGTATCCGCGTCTGTCACATGCGAGACCCGGGTTCAATACCCGGCCGGGGAGAAACCTTTTTTGCTTTTTTGATGAGCACTAATAAGTGATGGAACATGGTTTTTAGGTGTTTTTTAAATGATTTTTGGACATGGTAGGATGAATTTTCAGGCCAAATCCGACCATTTTCAGCTAACCACCAACGTCAACAAGCAAACCGCGAAGCCGGCCGCCAAAACCGTCATCACCAAATGGATTCCAGCCAACTGGAAGGCAGCAGGGGCTACTGTAGATGCCAAGAATCCTCTCACAAAACAGGCCTACGCTCAGAAGAAGGCGTTGACCTTCATAGATTTCAGATTTTCGCTTAAAAAGTACATCAACTATTTGTTTGTTCAAGCAGTTAGTACGAAATACTTGACTCAAGCGGAGGCGGATAACATGAAGAAAATGTATTGGGCTGCTGATACTAAAGCGGTCAATAATTTCACAATGACCACTCAGATCTTCATGGCTGATGCTTCAAAGGTTGGTGATTCTAAAACTGTTGAAATTCTATACATTACGGAAATTTGGAATTCTCATTATTAGTTTAGTCTCCTGGCAAATTTTCAAAGCGTTACGACCACTGGGAGCCGAGATACAGCCATTTGAATTTTCGGCGGCGCGGTCGCGTCGCGGCTCTTCCAAAACTTCAAAGGGCCGTATATCGGCTCCTAGTGGGTCAAACTGGCTGAAATTTTG</canonical>
            <polymorphic>CTTAACAATCGTTAAATGTGATGGAAAATAGCCCAACAATTGAAAAAAGGTTTCTAAAAGCAAAAACACAGTCTGAAACCCTTTAAAAACCAAGAAAACCCCAAAAATAGACCTAGAATTGAAACTTGCTCGTCAAATCTATTGCCTTGCACACAAGCTGTTTCCCCTAATTTCCCTTAACTTCCCTCCCCGGCGCCCTCCACCCTCCGCTCCCCCGCGCTCTCCTATACGCCCTCCACCTCCCTGTTTTCTCGTGTCCTCGGTAGTATAGTGGTGAGTATCCGCGTCTGTCACATGCGAGACCCGGGTTCAATACCCGGCCGGGGAGAAACCTTTTTTGCTTTTTTGATGAGCACTAATAAGTGATGGAACATGGTTTTTAGGTGTTTTTTAAATGATTTTTGGACATGGTAGGATGAATTTTCAGGCCAAATCCGACCATTTTCAGCTAACCACCAACGTCAACAAGCAAACCGCGAAGCCGGCCGCCAAAACCGTCRTCACCAAATGGATTCCAGCCAACTGGAAGGCAGCAGGGGCTACTGTAGATGCCAAGAATCCTCTCACAAAACAGGCCTACGCTCAGAAGAAGGCGTTGACCTTCATAGATTTCAGATTTTCGCTTAAAAAGTACATCAACTATTTGTTTGTTCAAGCAGTTAGTACGAAATACTTGACTCAAGCGGAGGCGGATAACATGAAGAAAATGTATTGGGCTGCTGATACTAAAGCGGTCAATAATTTCACAATGACCACTCAGATCTTCATGGCTGATGCTTCAAAGGTTGGTGATTCTAAAACTGTTGAAATTCTATACATTACGGAAATTTGGAATTCTCATTATTAGTTTAGTCTCCTGGCAAATTTTCAAAGCGTTACGACCACTGGGAGCCGAGATACAGCCATTTGAATTTTCGGCGGCGCGGTCGCGTCGCGGCTCTTCCAAAACTTCAAAGGGCCGTATATCGGCTCCTAGTGGGTCAAACTGGCTGAAATTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATGATTTTTGGACATGGTAG</pcr_primer_p1>
		<pcr_primer_p2>TGATGTACTTTTTAAGCGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TAAATGATTTTTGGACATGGTAGGATGAATTTTCAGGCCAAATCCGACCATTTTCAGCTAACCACCAACGTCAACAAGCAAACCGCGAAGCCGGCCGCCAAAACCGTCATCACCAAATGGATTCCAGCCAACTGGAAGGCAGCAGGGGCTACTGTAGATGCCAAGAATCCTCTCACAAAACAGGCCTACGCTCAGAAGAAGGCGTTGACCTTCATAGATTTCAGATTTTCGCTTAAAAAGTACATCA</canonical_amplicon>
		<polymorphic_amplicon>TAAATGATTTTTGGACATGGTAGGATGAATTTTCAGGCCAAATCCGACCATTTTCAGCTAACCACCAACGTCAACAAGCAAACCGCGAAGCCGGCCGCCAAAACCGTCRTCACCAAATGGATTCCAGCCAACTGGAAGGCAGCAGGGGCTACTGTAGATGCCAAGAATCCTCTCACAAAACAGGCCTACGCTCAGAAGAAGGCGTTGACCTTCATAGATTTCAGATTTTCGCTTAAAAAGTACATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5108</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>65239</contig_pos>
        <strand>+</strand>
        <context>CATAAAAAGA[A/G]CAATGAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTATTATCATTTTCTTTCTAGTTTTTCATCATTTTTTTCACATAAAAAGA</left_flank>
        <right_flank>CAATGAAAATACCCCAAAAATATATAGAAACTATTGAAAAAATCAATAGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCACCGTATCTAGGCTCCTAGAGCTCGGAATGAGCTCAAATTTTGTGTGGACAAAGAAAATAAAAGTGCAAATTTGTGCAGCAATTTTAACCTAGAAAATCGGAAATTTTTCAAATTCTTCAAAACATGCTATTTTTGATTTTTGAGCACAAATTTGGTAGAAATATGTATATTTGCCAAATCTGCGGTCTCACCAAGTTTCAGTCTTTTGGCTTGTCTGGGAGTCGAATTATAGCCATTTGAAAAAAGTGGCGTGCGGCGCGGTCGCGTAGCGGCTCACCTTCAAGTTCAAAGTGGCATATCTCAGTTCCTAGAGCTCGGATTGAGCCCGAATTTTGTGAGCACATAAAACAGAAAAGAGCAAACATATAGCCAGAACGAAAAGTCTAACAAAAAACAGGAAAAAAATTAGCTAATGTACCGGAAATTAAGTCATTTCCTTGTCTATGTATTATCATTTTCTTTCTAGTTTTTCATCATTTTTTTCACATAAAAAGAGCAATGAAAATACCCCAAAAATATATAGAAACTATTGAAAAAATCAATAGTTATTTGGCATTGCTCACTCTTACCATCCTACTGTACCTCATCATCTTTAAATCTCCCCACCGTCTGGGCACCTATAAATATCTAATGACCTATTTATCGATTTTTGAAATGGTTTACGCCGGTCTAATGATTTTGAGCTTACCGCAAATTTATACAAAGGATTCGGGCTTTTTTGTGGTTATGAATAGAAATGTGACTGGAGAGAATTTCCGGATTTTTAACATTTTCTATTTTGCAATGTTTTCCACTTCAATGGCTAATTTCAGTGTACATTTTGTTTATAGATTTTTGGCGATCAAGGGGTGAGATTTGTACTGATATTTTGTCAAAACAATAAACAGGTTATAATAAACTTTCTCACCAATTTTCAGCCTTCTACATAGCTTGTCTTGGAGCTGACAAGGGAACCATGTTTAGCCTTCATCTCAGAATTTTTTCTAAATTTGCTCA</canonical>
            <polymorphic>AGCACCGTATCTAGGCTCCTAGAGCTCGGAATGAGCTCAAATTTTGTGTGGACAAAGAAAATAAAAGTGCAAATTTGTGCAGCAATTTTAACCTAGAAAATCGGAAATTTTTCAAATTCTTCAAAACATGCTATTTTTGATTTTTGAGCACAAATTTGGTAGAAATATGTATATTTGCCAAATCTGCGGTCTCACCAAGTTTCAGTCTTTTGGCTTGTCTGGGAGTCGAATTATAGCCATTTGAAAAAAGTGGCGTGCGGCGCGGTCGCGTAGCGGCTCACCTTCAAGTTCAAAGTGGCATATCTCAGTTCCTAGAGCTCGGATTGAGCCCGAATTTTGTGAGCACATAAAACAGAAAAGAGCAAACATATAGCCAGAACGAAAAGTCTAACAAAAAACAGGAAAAAAATTAGCTAATGTACCGGAAATTAAGTCATTTCCTTGTCTATGTATTATCATTTTCTTTCTAGTTTTTCATCATTTTTTTCACATAAAAAGARCAATGAAAATACCCCAAAAATATATAGAAACTATTGAAAAAATCAATAGTTATTTGGCATTGCTCACTCTTACCATCCTACTGTACCTCATCATCTTTAAATCTCCCCACCGTCTGGGCACCTATAAATATCTAATGACCTATTTATCGATTTTTGAAATGGTTTACGCCGGTCTAATGATTTTGAGCTTACCGCAAATTTATACAAAGGATTCGGGCTTTTTTGTGGTTATGAATAGAAATGTGACTGGAGAGAATTTCCGGATTTTTAACATTTTCTATTTTGCAATGTTTTCCACTTCAATGGCTAATTTCAGTGTACATTTTGTTTATAGATTTTTGGCGATCAAGGGGTGAGATTTGTACTGATATTTTGTCAAAACAATAAACAGGTTATAATAAACTTTCTCACCAATTTTCAGCCTTCTACATAGCTTGTCTTGGAGCTGACAAGGGAACCATGTTTAGCCTTCATCTCAGAATTTTTTCTAAATTTGCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAATGTACCGGAAATTAAGTCA</pcr_primer_p1>
		<pcr_primer_p2>ACCATTTCAAAAATCGATAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAATGTACCGGAAATTAAGTCATTTCCTTGTCTATGTATTATCATTTTCTTTCTAGTTTTTCATCATTTTTTTCACATAAAAAGAGCAATGAAAATACCCCAAAAATATATAGAAACTATTGAAAAAATCAATAGTTATTTGGCATTGCTCACTCTTACCATCCTACTGTACCTCATCATCTTTAAATCTCCCCACCGTCTGGGCACCTATAAATATCTAATGACCTATTTATCGATTTTTGAAATGGT</canonical_amplicon>
		<polymorphic_amplicon>CTAATGTACCGGAAATTAAGTCATTTCCTTGTCTATGTATTATCATTTTCTTTCTAGTTTTTCATCATTTTTTTCACATAAAAAGARCAATGAAAATACCCCAAAAATATATAGAAACTATTGAAAAAATCAATAGTTATTTGGCATTGCTCACTCTTACCATCCTACTGTACCTCATCATCTTTAAATCTCCCCACCGTCTGGGCACCTATAAATATCTAATGACCTATTTATCGATTTTTGAAATGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5109</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>67763</contig_pos>
        <strand>+</strand>
        <context>CTCATTTTTT[A/G]AAACCCTCGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTT</left_flank>
        <right_flank>AAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAATTTAACATTCATTAATTTAGGTACAAGTCCTGGACCCAATTTAGTCCCTCAAAACTATTGATCTATATTTCTTGTCCTCTAATTGTTGGCATAGCGGATACGGTAGTTGTAATCACATTTTGGGGTGAAAATGAGTCAACGCAGTGGTTTATGAGGCAGGTCATGTGGTAGTAAATCAAAACAAAGAATTTTTCCAGAATGAAAATTTCTGAAAATTTGGAAAATTTGAGTTTCATTGGGTTTTGTATTATTGCACAAGACGAAAACTCAATAAAGTATATAAATTGGCATAGTATAATTGGTATAGCAGCTGCTTGTCTATTAATTGTGAGTTTTTGGACGCGACGCGGTCGCGAAGCGGTCTAAAAGAAAAGTTTCCAGACGTTTTCGATGATTATCATGTTATATTTTGGAAT</canonical>
            <polymorphic>AAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTRAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAATTTAACATTCATTAATTTAGGTACAAGTCCTGGACCCAATTTAGTCCCTCAAAACTATTGATCTATATTTCTTGTCCTCTAATTGTTGGCATAGCGGATACGGTAGTTGTAATCACATTTTGGGGTGAAAATGAGTCAACGCAGTGGTTTATGAGGCAGGTCATGTGGTAGTAAATCAAAACAAAGAATTTTTCCAGAATGAAAATTTCTGAAAATTTGGAAAATTTGAGTTTCATTGGGTTTTGTATTATTGCACAAGACGAAAACTCAATAAAGTATATAAATTGGCATAGTATAATTGGTATAGCAGCTGCTTGTCTATTAATTGTGAGTTTTTGGACGCGACGCGGTCGCGAAGCGGTCTAAAAGAAAAGTTTCCAGACGTTTTCGATGATTATCATGTTATATTTTGGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 348 65 60 26</canonical_bands>
                <polymorphic_bands>527 348 65 60</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>310 124 94 88 77 74 65 60 56 26 16 10</canonical_bands>
                <polymorphic_bands>310 124 114 94 77 74 65 60 56 16 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTAACTTGGGTTCTAGGTG</pcr_primer_p1>
		<pcr_primer_p2>TGAATGTTAAATTTTCAGGATCT</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>CGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAATTTAACATTCA</canonical_amplicon>
		<polymorphic_amplicon>CGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTRAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAATTTAACATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5110</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>67729</contig_pos>
        <strand></strand>
        <context>AAAYAMATTT[G/T]AAATTTTAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTT</left_flank>
        <right_flank>AAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAATTTAACATTCATTAATTTAGGTACAAGTCCTGGACCCAATTTAGTCCCTCAAAACTATTGATCTATATTTCTTGTCCTCTAATTGTTGGCATAGCGGATACGGTAGTTGTAATCACATTTTGGGGTGAAAATGAGTCAACGCAGTGGTTTATGAGGCAGGTCATGTGGTAGTAAATCAAAACAAAGAATTTTTCCAGAATGAAAATTTCTGAAAATTTGGAAAATTTGAGTTTCATTGGGTTTTGTATTATTGCACAAGACGAAAACTCAATAAAGTATATAAATTGGCATAGTATAATTGGTATAGCAGCTGCTTGTCTATTAATTGTGAGTTTTTGGACGCGACGCGGTCGCGAAGCGGTCTAAAAGAAAAGTTTCCAGA</canonical>
            <polymorphic>ACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTKAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAATTTAACATTCATTAATTTAGGTACAAGTCCTGGACCCAATTTAGTCCCTCAAAACTATTGATCTATATTTCTTGTCCTCTAATTGTTGGCATAGCGGATACGGTAGTTGTAATCACATTTTGGGGTGAAAATGAGTCAACGCAGTGGTTTATGAGGCAGGTCATGTGGTAGTAAATCAAAACAAAGAATTTTTCCAGAATGAAAATTTCTGAAAATTTGGAAAATTTGAGTTTCATTGGGTTTTGTATTATTGCACAAGACGAAAACTCAATAAAGTATATAAATTGGCATAGTATAATTGGTATAGCAGCTGCTTGTCTATTAATTGTGAGTTTTTGGACGCGACGCGGTCGCGAAGCGGTCTAAAAGAAAAGTTTCCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTTATGGCCACTTGAAGA</pcr_primer_p1>
		<pcr_primer_p2>AGAGAAATTAGTCCATGGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCT</canonical_amplicon>
		<polymorphic_amplicon>GAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTKAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5111</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>67724</contig_pos>
        <strand></strand>
        <context>AGAAAAAAYA[A/C]ATTTKAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACA</left_flank>
        <right_flank>ATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTA</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAATTTAACATTCATTAATTTAGGTACAAGTCCTGGACCCAATTTAGTCCCTCAAAACTATTGATCTATATTTCTTGTCCTCTAATTGTTGGCATAGCGGATACGGTAGTTGTAATCACATTTTGGGGTGAAAATGAGTCAACGCAGTGGTTTATGAGGCAGGTCATGTGGTAGTAAATCAAAACAAAGAATTTTTCCAGAATGAAAATTTCTGAAAATTTGGAAAATTTGAGTTTCATTGGGTTTTGTATTATTGCACAAGACGAAAACTCAATAAAGTATATAAATTGGCATAGTATAATTGGTATAGCAGCTGCTTGTCTATTAATTGTGAGTTTTTGGACGCGACGCGGTCGCGAAGCGGTCTAAAAGAAAAGTTT</canonical>
            <polymorphic>TTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAMATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAATTTAACATTCATTAATTTAGGTACAAGTCCTGGACCCAATTTAGTCCCTCAAAACTATTGATCTATATTTCTTGTCCTCTAATTGTTGGCATAGCGGATACGGTAGTTGTAATCACATTTTGGGGTGAAAATGAGTCAACGCAGTGGTTTATGAGGCAGGTCATGTGGTAGTAAATCAAAACAAAGAATTTTTCCAGAATGAAAATTTCTGAAAATTTGGAAAATTTGAGTTTCATTGGGTTTTGTATTATTGCACAAGACGAAAACTCAATAAAGTATATAAATTGGCATAGTATAATTGGTATAGCAGCTGCTTGTCTATTAATTGTGAGTTTTTGGACGCGACGCGGTCGCGAAGCGGTCTAAAAGAAAAGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>188 155 153 136 82 63 56 43 41 21 17 11 10 9 8 7</canonical_bands>
                <polymorphic_bands>188 155 153 136 82 63 56 43 41 28 17 11 10 9 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>153 136 106 60 56 54 52 44 43 43 41 27 24 21 20 18 17 15 14 11 11 10 9 8 7</canonical_bands>
                <polymorphic_bands>153 136 106 60 56 54 52 44 43 43 41 28 27 24 20 18 17 15 14 11 11 10 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTTATGGCCACTTGAAGA</pcr_primer_p1>
		<pcr_primer_p2>AGAGAAATTAGTCCATGGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCT</canonical_amplicon>
		<polymorphic_amplicon>GAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAMATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5112</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>67722</contig_pos>
        <strand></strand>
        <context>CCAGAAAAAA[C/T]AMATTTKAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAA</left_flank>
        <right_flank>AAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAATTTAACATTCATTAATTTAGGTACAAGTCCTGGACCCAATTTAGTCCCTCAAAACTATTGATCTATATTTCTTGTCCTCTAATTGTTGGCATAGCGGATACGGTAGTTGTAATCACATTTTGGGGTGAAAATGAGTCAACGCAGTGGTTTATGAGGCAGGTCATGTGGTAGTAAATCAAAACAAAGAATTTTTCCAGAATGAAAATTTCTGAAAATTTGGAAAATTTGAGTTTCATTGGGTTTTGTATTATTGCACAAGACGAAAACTCAATAAAGTATATAAATTGGCATAGTATAATTGGTATAGCAGCTGCTTGTCTATTAATTGTGAGTTTTTGGACGCGACGCGGTCGCGAAGCGGTCTAAAAGAAAAGT</canonical>
            <polymorphic>CGTTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAAYAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAATTTAACATTCATTAATTTAGGTACAAGTCCTGGACCCAATTTAGTCCCTCAAAACTATTGATCTATATTTCTTGTCCTCTAATTGTTGGCATAGCGGATACGGTAGTTGTAATCACATTTTGGGGTGAAAATGAGTCAACGCAGTGGTTTATGAGGCAGGTCATGTGGTAGTAAATCAAAACAAAGAATTTTTCCAGAATGAAAATTTCTGAAAATTTGGAAAATTTGAGTTTCATTGGGTTTTGTATTATTGCACAAGACGAAAACTCAATAAAGTATATAAATTGGCATAGTATAATTGGTATAGCAGCTGCTTGTCTATTAATTGTGAGTTTTTGGACGCGACGCGGTCGCGAAGCGGTCTAAAAGAAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTTATGGCCACTTGAAGA</pcr_primer_p1>
		<pcr_primer_p2>AGAGAAATTAGTCCATGGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCT</canonical_amplicon>
		<polymorphic_amplicon>GAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAAYAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5113</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>67702</contig_pos>
        <strand>+</strand>
        <context>ATATCTTTGC[A/G]AATTTTCAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGC</left_flank>
        <right_flank>AATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATAATGCTAGTAAAAACAACGTTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAATTTAACATTCATTAATTTAGGTACAAGTCCTGGACCCAATTTAGTCCCTCAAAACTATTGATCTATATTTCTTGTCCTCTAATTGTTGGCATAGCGGATACGGTAGTTGTAATCACATTTTGGGGTGAAAATGAGTCAACGCAGTGGTTTATGAGGCAGGTCATGTGGTAGTAAATCAAAACAAAGAATTTTTCCAGAATGAAAATTTCTGAAAATTTGGAAAATTTGAGTTTCATTGGGTTTTGTATTATTGCACAAGACGAAAACTCAATAAAGTATATAAATTGGCATAGTATAATTGGTATAGCAGCTGCTTGTCTATTAATTGTGAGTTTTTGGACGCGACGCGGTCGCG</canonical>
            <polymorphic>GATAATGCTAGTAAAAACAACGTTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCRAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAATTTAACATTCATTAATTTAGGTACAAGTCCTGGACCCAATTTAGTCCCTCAAAACTATTGATCTATATTTCTTGTCCTCTAATTGTTGGCATAGCGGATACGGTAGTTGTAATCACATTTTGGGGTGAAAATGAGTCAACGCAGTGGTTTATGAGGCAGGTCATGTGGTAGTAAATCAAAACAAAGAATTTTTCCAGAATGAAAATTTCTGAAAATTTGGAAAATTTGAGTTTCATTGGGTTTTGTATTATTGCACAAGACGAAAACTCAATAAAGTATATAAATTGGCATAGTATAATTGGTATAGCAGCTGCTTGTCTATTAATTGTGAGTTTTTGGACGCGACGCGGTCGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>188 153 136 133 82 63 56 43 41 30 21 17 11 10 9 7</canonical_bands>
                <polymorphic_bands>188 153 136 133 82 64 63 56 41 30 17 11 10 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTTATGGCCACTTGAAGA</pcr_primer_p1>
		<pcr_primer_p2>AGAGAAATTAGTCCATGGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCT</canonical_amplicon>
		<polymorphic_amplicon>GAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCRAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5114</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>67645</contig_pos>
        <strand>+</strand>
        <context>GTTCTAGGTG[C/T]CCAAAAGCGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTG</left_flank>
        <right_flank>CCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTTTTTTTTTGAAAATTTTCAAGTTACGAATTTTTGGCTCGAAATTGGTTTACATGATAATGCTAGTAAAAACAACGTTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAATTTAACATTCATTAATTTAGGTACAAGTCCTGGACCCAATTTAGTCCCTCAAAACTATTGATCTATATTTCTTGTCCTCTAATTGTTGGCATAGCGGATACGGTAGTTGTAATCACATTTTGGGGTGAAAATGAGTCAACGCAGTGGTTTATGAGGCAGGTCATGTGGTAGTAAATCAAAACAAAGAATTTTTCCAGAATGAAAATTTCTGAAAATTTGGAAAATTTGAGTTTCATTGGGTTTTGTATTATTGCACAAGACGAAAACTCAATAAAGTATATAAATTGGCATAGTATAA</canonical>
            <polymorphic>AGTTTTTTTTTTGAAAATTTTCAAGTTACGAATTTTTGGCTCGAAATTGGTTTACATGATAATGCTAGTAAAAACAACGTTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGYCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAATTTAACATTCATTAATTTAGGTACAAGTCCTGGACCCAATTTAGTCCCTCAAAACTATTGATCTATATTTCTTGTCCTCTAATTGTTGGCATAGCGGATACGGTAGTTGTAATCACATTTTGGGGTGAAAATGAGTCAACGCAGTGGTTTATGAGGCAGGTCATGTGGTAGTAAATCAAAACAAAGAATTTTTCCAGAATGAAAATTTCTGAAAATTTGGAAAATTTGAGTTTCATTGGGTTTTGTATTATTGCACAAGACGAAAACTCAATAAAGTATATAAATTGGCATAGTATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>498 264 238</canonical_bands>
                <polymorphic_bands>736 264</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTTATGGCCACTTGAAGA</pcr_primer_p1>
		<pcr_primer_p2>AGAGAAATTAGTCCATGGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCT</canonical_amplicon>
		<polymorphic_amplicon>GAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGYCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5115</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>67605</contig_pos>
        <strand>+</strand>
        <context>CGTCGCGGCC[G/T]CTGTTTAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCC</left_flank>
        <right_flank>CTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCATATTTTTCAGTTTTCAGCTTTTTCCTCTAACTTTCAGTTTTTTTTTTGAAAATTTTCAAGTTACGAATTTTTGGCTCGAAATTGGTTTACATGATAATGCTAGTAAAAACAACGTTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAATTTAACATTCATTAATTTAGGTACAAGTCCTGGACCCAATTTAGTCCCTCAAAACTATTGATCTATATTTCTTGTCCTCTAATTGTTGGCATAGCGGATACGGTAGTTGTAATCACATTTTGGGGTGAAAATGAGTCAACGCAGTGGTTTATGAGGCAGGTCATGTGGTAGTAAATCAAAACAAAGAATTTTTCCAGAATGAAAATTTCTGAAAATTTGGAAAATTTGAGTTTCATTGGGTTTTGTATTATTGCACAA</canonical>
            <polymorphic>AAGCATATTTTTCAGTTTTCAGCTTTTTCCTCTAACTTTCAGTTTTTTTTTTGAAAATTTTCAAGTTACGAATTTTTGGCTCGAAATTGGTTTACATGATAATGCTAGTAAAAACAACGTTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCKCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAATTTAACATTCATTAATTTAGGTACAAGTCCTGGACCCAATTTAGTCCCTCAAAACTATTGATCTATATTTCTTGTCCTCTAATTGTTGGCATAGCGGATACGGTAGTTGTAATCACATTTTGGGGTGAAAATGAGTCAACGCAGTGGTTTATGAGGCAGGTCATGTGGTAGTAAATCAAAACAAAGAATTTTTCCAGAATGAAAATTTCTGAAAATTTGGAAAATTTGAGTTTCATTGGGTTTTGTATTATTGCACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTTATGGCCACTTGAAGA</pcr_primer_p1>
		<pcr_primer_p2>AGAGAAATTAGTCCATGGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCT</canonical_amplicon>
		<polymorphic_amplicon>GAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCKCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5116</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>67548</contig_pos>
        <strand>+</strand>
        <context>AGCTCATCTG[G/T]GAGTCGAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTG</left_flank>
        <right_flank>GAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGTTCTAGGTGTCCAAAAGCGCTGCGAATTGGCGAGGACTCAGAAATTATGCAAGGAAGCATATTTTTCAGTTTTCAGCTTTTTCCTCTAACTTTCAGTTTTTTTTTTGAAAATTTTCAAGTTACGAATTTTTGGCTCGAAATTGGTTTACATGATAATGCTAGTAAAAACAACGTTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAATTTAACATTCATTAATTTAGGTACAAGTCCTGGACCCAATTTAGTCCCTCAAAACTATTGATCTATATTTCTTGTCCTCTAATTGTTGGCATAGCGGATACGGTAGTTGTAATCACATTTTGGGGTGAAAATGAGTCAACGCAGTGGTTTATGAGGCAGGTCATGTGGTAGTAAATCAAAACAAAGAATTTTTCCAGAATG</canonical>
            <polymorphic>GGGTTCTAGGTGTCCAAAAGCGCTGCGAATTGGCGAGGACTCAGAAATTATGCAAGGAAGCATATTTTTCAGTTTTCAGCTTTTTCCTCTAACTTTCAGTTTTTTTTTTGAAAATTTTCAAGTTACGAATTTTTGGCTCGAAATTGGTTTACATGATAATGCTAGTAAAAACAACGTTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGKGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAATTTAACATTCATTAATTTAGGTACAAGTCCTGGACCCAATTTAGTCCCTCAAAACTATTGATCTATATTTCTTGTCCTCTAATTGTTGGCATAGCGGATACGGTAGTTGTAATCACATTTTGGGGTGAAAATGAGTCAACGCAGTGGTTTATGAGGCAGGTCATGTGGTAGTAAATCAAAACAAAGAATTTTTCCAGAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>170 145 131 117 63 61 47 34 29 26 23 23 21 19 18 17 16 12 12 8 8</canonical_bands>
                <polymorphic_bands>170 145 131 117 63 61 47 45 34 26 23 23 21 19 18 17 12 12 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATAAACATATTTTCCAATTTTCA</pcr_primer_p1>
		<pcr_primer_p2>CACCTAGAACCCAAGTTACG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTG</canonical_amplicon>
		<polymorphic_amplicon>GATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGKGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5117</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>67481</contig_pos>
        <strand>+</strand>
        <context>YAAGCCCAAG[C/T]TTGATTAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAG</left_flank>
        <right_flank>TTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAAAAATGAGGGACGCGGCGCGGTCGCGTCGCGGCTGCTGTCTATAGCAAAAGGCTCGTAACTTGGGTTCTAGGTGTCCAAAAGCGCTGCGAATTGGCGAGGACTCAGAAATTATGCAAGGAAGCATATTTTTCAGTTTTCAGCTTTTTCCTCTAACTTTCAGTTTTTTTTTTGAAAATTTTCAAGTTACGAATTTTTGGCTCGAAATTGGTTTACATGATAATGCTAGTAAAAACAACGTTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAATTTAACATTCATTAATTTAGGTACAAGTCCTGGACCCAATTTAGTCCCTCAAAACTATTGATCTATATTTCTTGTCCTCTAATTGTTGGCATAGCGGATACGGTAGTTGTAATCACATTTTGGGGTGAAAATGA</canonical>
            <polymorphic>TTTGAAAAATGAGGGACGCGGCGCGGTCGCGTCGCGGCTGCTGTCTATAGCAAAAGGCTCGTAACTTGGGTTCTAGGTGTCCAAAAGCGCTGCGAATTGGCGAGGACTCAGAAATTATGCAAGGAAGCATATTTTTCAGTTTTCAGCTTTTTCCTCTAACTTTCAGTTTTTTTTTTGAAAATTTTCAAGTTACGAATTTTTGGCTCGAAATTGGTTTACATGATAATGCTAGTAAAAACAACGTTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGYTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAATTTAACATTCATTAATTTAGGTACAAGTCCTGGACCCAATTTAGTCCCTCAAAACTATTGATCTATATTTCTTGTCCTCTAATTGTTGGCATAGCGGATACGGTAGTTGTAATCACATTTTGGGGTGAAAATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>442 217 146 136 59</canonical_bands>
                <polymorphic_bands>442 217 195 146</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>201 109 89 78 59 57 57 52 41 40 40 37 32 31 28 23 20 6</canonical_bands>
                <polymorphic_bands>201 109 89 78 65 57 57 52 41 40 40 37 32 31 28 23 20</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATAAACATATTTTCCAATTTTCA</pcr_primer_p1>
		<pcr_primer_p2>CACCTAGAACCCAAGTTACG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTG</canonical_amplicon>
		<polymorphic_amplicon>GATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGYTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5118</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>67471</contig_pos>
        <strand>+</strand>
        <context>ATACGCTTTT[C/T]AAGCCCAAGY</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTT</left_flank>
        <right_flank>AAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTATGGTCTTTTGAAAAATGAGGGACGCGGCGCGGTCGCGTCGCGGCTGCTGTCTATAGCAAAAGGCTCGTAACTTGGGTTCTAGGTGTCCAAAAGCGCTGCGAATTGGCGAGGACTCAGAAATTATGCAAGGAAGCATATTTTTCAGTTTTCAGCTTTTTCCTCTAACTTTCAGTTTTTTTTTTGAAAATTTTCAAGTTACGAATTTTTGGCTCGAAATTGGTTTACATGATAATGCTAGTAAAAACAACGTTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAATTTAACATTCATTAATTTAGGTACAAGTCCTGGACCCAATTTAGTCCCTCAAAACTATTGATCTATATTTCTTGTCCTCTAATTGTTGGCATAGCGGATACGGTAGTTGTAATCACATTTTGGG</canonical>
            <polymorphic>GTTATGGTCTTTTGAAAAATGAGGGACGCGGCGCGGTCGCGTCGCGGCTGCTGTCTATAGCAAAAGGCTCGTAACTTGGGTTCTAGGTGTCCAAAAGCGCTGCGAATTGGCGAGGACTCAGAAATTATGCAAGGAAGCATATTTTTCAGTTTTCAGCTTTTTCCTCTAACTTTCAGTTTTTTTTTTGAAAATTTTCAAGTTACGAATTTTTGGCTCGAAATTGGTTTACATGATAATGCTAGTAAAAACAACGTTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTYAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAATTTAACATTCATTAATTTAGGTACAAGTCCTGGACCCAATTTAGTCCCTCAAAACTATTGATCTATATTTCTTGTCCTCTAATTGTTGGCATAGCGGATACGGTAGTTGTAATCACATTTTGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>348 124 112 88 77 74 65 60 26 16 10</canonical_bands>
                <polymorphic_bands>348 124 112 93 88 74 65 60 26 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATAAACATATTTTCCAATTTTCA</pcr_primer_p1>
		<pcr_primer_p2>CACCTAGAACCCAAGTTACG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTG</canonical_amplicon>
		<polymorphic_amplicon>GATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTYAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5120</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>67292</contig_pos>
        <strand></strand>
        <context>aaatgagagg[T/A]gcggcgcgrt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGG</left_flank>
        <right_flank>GCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGTGGAAGGGAAGGAGGAGACAAAAAAAAAACAGCATATTTTCAGATGGAATTTCCTCGAATTCTAGAAATTTGTGCAGAAAACCGAATACACCACGAGAAAGCCCGTATTCGAAACTATAAATGAGCTAATTTAGAAGAAATTCTGAGATGAAGGCTAAACATGGTTCCCTTATGAGTTATGGTCTTTTGAAAAATGAGGGACGCGGCGCGGTCGCGTCGCGGCTGCTGTCTATAGCAAAAGGCTCGTAACTTGGGTTCTAGGTGTCCAAAAGCGCTGCGAATTGGCGAGGACTCAGAAATTATGCAAGGAAGCATATTTTTCAGTTTTCAGCTTTTTCCTCTAACTTTCAGTTTTTTTTTTGAAAATTTTCAAGTTACGAATTTTTGGCTCGAAATTGGTTTACATGATAATGCTAGTAAAAACAACGTTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGAC</canonical>
            <polymorphic>AAAGTGGAAGGGAAGGAGGAGACAAAAAAAAAACAGCATATTTTCAGATGGAATTTCCTCGAATTCTAGAAATTTGTGCAGAAAACCGAATACACCACGAGAAAGCCCGTATTCGAAACTATAAATGAGCTAATTTAGAAGAAATTCTGAGATGAAGGCTAAACATGGTTCCCTTATGAGTTATGGTCTTTTGAAAAATGAGGGACGCGGCGCGGTCGCGTCGCGGCTGCTGTCTATAGCAAAAGGCTCGTAACTTGGGTTCTAGGTGTCCAAAAGCGCTGCGAATTGGCGAGGACTCAGAAATTATGCAAGGAAGCATATTTTTCAGTTTTCAGCTTTTTCCTCTAACTTTCAGTTTTTTTTTTGAAAATTTTCAAGTTACGAATTTTTGGCTCGAAATTGGTTTACATGATAATGCTAGTAAAAACAACGTTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGWGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>171 170 145 117 72 63 61 29 26 23 23 18 17 16 16 8 8 8 6 3</canonical_bands>
                <polymorphic_bands>171 170 145 117 86 72 61 29 26 23 18 17 16 16 8 8 8 6 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCCTCTAACTTTCAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTCATAAAATTTCACCTCAACAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCCTCTAACTTTCAGTTTTTTTTTTGAAAATTTTCAAGTTACGAATTTTTGGCTCGAAATTGGTTTACATGATAATGCTAGTAAAAACAACGTTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCCTCTAACTTTCAGTTTTTTTTTTGAAAATTTTCAAGTTACGAATTTTTGGCTCGAAATTGGTTTACATGATAATGCTAGTAAAAACAACGTTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGWGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5146</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>189548</contig_pos>
        <strand></strand>
        <context>ACACTAAAAA[G/A]CTGACCCAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AACCCTAAAAATCACCAAAAGTTGGAAAAATGGCCTAAAAACACTAAAAA</left_flank>
        <right_flank>CTGACCCAAATCACCTGAATAATGATCTGAAAATTGGGAAAACGACTTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTAAAGCTGGAAAATCGAAAAATTGGATTAACATATACTTCAAATGAGAATTTCATACTCTAAAAGTTGAGAAAATCGTAAATTCAGAAGTTTGACTATTCTAGATTGGAAATTCTCAACAAAAAAATTTCAGCCTGAAATCAAAAAAAAAAAACCTAAATTTGAGCTATAATAGCCTAAATTTCCCCTAAATTTAAGCCTAAATAGCCTAAATTTGAGCTGTCTGGACCAGAAAAATACATATCTATTCCATTTTTCAGCGCCCAATTCGATCGCGCCTATAACAGTGGAAGCGGTGGAGGACAGGATCGTCCATCAGTCGATCCATTCGGACGTCCGATGTATTCAGGTAAGAGGGTTTTCAGAGAAACTTGGGGGGAAGAAACTGAAAAAAATGACCCAAAATTGAAAACAAAGACTTAAAAACACGGAAAAATGACCCAAAACAACCCTAAAAATCACCAAAAGTTGGAAAAATGGCCTAAAAACACTAAAAAGCTGACCCAAATCACCTGAATAATGATCTGAAAATTGGGAAAACGACTTTAAAAACTCAGAAATGGAACCTGAAAAATTAGAACAATCACTTAAAAAATAATAAAAAATGATCTAAAAATTAGAAAAATGGCCTGAAAATGAGGAATTCCAAGAATTGGCTAATAAAGTTCAAAAATGATATCATAATATTTACCGGGAAAAATGTTGCAAAAGTTGCTTTTTTATTAGAAAAGAAGAGCATCATCTCACTATTGTGTGATAAGGACTCCCTGGAATTATGATTGCACACATAGCTAAAACAAACTTTAACACCTATTTAGCTGCTCCGTTTGTAGAGCGTAAAATGAACTCATTTTATGTGTAAATTGACACAGAATTGTCAATTTTCGAGCTGAAACTCGCTATTTTTGACAGTTCAGGCGTTATAATTGAGCTGAAAACCACATTTAGAGCTAAAATTAGTCTTGGAACCATGATTATTGAAGCCAGAACATTGACAA</canonical>
            <polymorphic>TTCTAAAGCTGGAAAATCGAAAAATTGGATTAACATATACTTCAAATGAGAATTTCATACTCTAAAAGTTGAGAAAATCGTAAATTCAGAAGTTTGACTATTCTAGATTGGAAATTCTCAACAAAAAAATTTCAGCCTGAAATCAAAAAAAAAAAACCTAAATTTGAGCTATAATAGCCTAAATTTCCCCTAAATTTAAGCCTAAATAGCCTAAATTTGAGCTGTCTGGACCAGAAAAATACATATCTATTCCATTTTTCAGCGCCCAATTCGATCGCGCCTATAACAGTGGAAGCGGTGGAGGACAGGATCGTCCATCAGTCGATCCATTCGGACGTCCGATGTATTCAGGTAAGAGGGTTTTCAGAGAAACTTGGGGGGAAGAAACTGAAAAAAATGACCCAAAATTGAAAACAAAGACTTAAAAACACGGAAAAATGACCCAAAACAACCCTAAAAATCACCAAAAGTTGGAAAAATGGCCTAAAAACACTAAAAARCTGACCCAAATCACCTGAATAATGATCTGAAAATTGGGAAAACGACTTTAAAAACTCAGAAATGGAACCTGAAAAATTAGAACAATCACTTAAAAAATAATAAAAAATGATCTAAAAATTAGAAAAATGGCCTGAAAATGAGGAATTCCAAGAATTGGCTAATAAAGTTCAAAAATGATATCATAATATTTACCGGGAAAAATGTTGCAAAAGTTGCTTTTTTATTAGAAAAGAAGAGCATCATCTCACTATTGTGTGATAAGGACTCCCTGGAATTATGATTGCACACATAGCTAAAACAAACTTTAACACCTATTTAGCTGCTCCGTTTGTAGAGCGTAAAATGAACTCATTTTATGTGTAAATTGACACAGAATTGTCAATTTTCGAGCTGAAACTCGCTATTTTTGACAGTTCAGGCGTTATAATTGAGCTGAAAACCACATTTAGAGCTAAAATTAGTCTTGGAACCATGATTATTGAAGCCAGAACATTGACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>293 279 160 71 53 48 42 27 19 8</canonical_bands>
                <polymorphic_bands>572 160 71 53 48 42 27 19 8</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>261 135 130 127 71 42 33 33 28 27 23 19 18 15 12 9 9 8</canonical_bands>
                <polymorphic_bands>261 148 135 127 71 42 33 33 28 27 23 19 15 12 9 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTATTCAGGTAAGAGGGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGATTGTTCTAATTTTTCAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATGTATTCAGGTAAGAGGGTTTTCAGAGAAACTTGGGGGGAAGAAACTGAAAAAAATGACCCAAAATTGAAAACAAAGACTTAAAAACACGGAAAAATGACCCAAAACAACCCTAAAAATCACCAAAAGTTGGAAAAATGGCCTAAAAACACTAAAAAGCTGACCCAAATCACCTGAATAATGATCTGAAAATTGGGAAAACGACTTTAAAAACTCAGAAATGGAACCTGAAAAATTAGAACAATCA</canonical_amplicon>
		<polymorphic_amplicon>ATGTATTCAGGTAAGAGGGTTTTCAGAGAAACTTGGGGGGAAGAAACTGAAAAAAATGACCCAAAATTGAAAACAAAGACTTAAAAACACGGAAAAATGACCCAAAACAACCCTAAAAATCACCAAAAGTTGGAAAAATGGCCTAAAAACACTAAAAARCTGACCCAAATCACCTGAATAATGATCTGAAAATTGGGAAAACGACTTTAAAAACTCAGAAATGGAACCTGAAAAATTAGAACAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5147</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>189577</contig_pos>
        <strand></strand>
        <context>ATAATGATCT[G/A]AAAATTGGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATGGCCTAAAAACACTAAAAAGCTGACCCAAATCACCTGAATAATGATCT</left_flank>
        <right_flank>AAAATTGGGAAAACGACTTTAAAAACTCAGAAATGGAACCTGAAAAATTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAACATATACTTCAAATGAGAATTTCATACTCTAAAAGTTGAGAAAATCGTAAATTCAGAAGTTTGACTATTCTAGATTGGAAATTCTCAACAAAAAAATTTCAGCCTGAAATCAAAAAAAAAAAACCTAAATTTGAGCTATAATAGCCTAAATTTCCCCTAAATTTAAGCCTAAATAGCCTAAATTTGAGCTGTCTGGACCAGAAAAATACATATCTATTCCATTTTTCAGCGCCCAATTCGATCGCGCCTATAACAGTGGAAGCGGTGGAGGACAGGATCGTCCATCAGTCGATCCATTCGGACGTCCGATGTATTCAGGTAAGAGGGTTTTCAGAGAAACTTGGGGGGAAGAAACTGAAAAAAATGACCCAAAATTGAAAACAAAGACTTAAAAACACGGAAAAATGACCCAAAACAACCCTAAAAATCACCAAAAGTTGGAAAAATGGCCTAAAAACACTAAAAAGCTGACCCAAATCACCTGAATAATGATCTGAAAATTGGGAAAACGACTTTAAAAACTCAGAAATGGAACCTGAAAAATTAGAACAATCACTTAAAAAATAATAAAAAATGATCTAAAAATTAGAAAAATGGCCTGAAAATGAGGAATTCCAAGAATTGGCTAATAAAGTTCAAAAATGATATCATAATATTTACCGGGAAAAATGTTGCAAAAGTTGCTTTTTTATTAGAAAAGAAGAGCATCATCTCACTATTGTGTGATAAGGACTCCCTGGAATTATGATTGCACACATAGCTAAAACAAACTTTAACACCTATTTAGCTGCTCCGTTTGTAGAGCGTAAAATGAACTCATTTTATGTGTAAATTGACACAGAATTGTCAATTTTCGAGCTGAAACTCGCTATTTTTGACAGTTCAGGCGTTATAATTGAGCTGAAAACCACATTTAGAGCTAAAATTAGTCTTGGAACCATGATTATTGAAGCCAGAACATTGACAATGCCATTTTGGAGTCATTTTTCTTATTTT</canonical>
            <polymorphic>TTAACATATACTTCAAATGAGAATTTCATACTCTAAAAGTTGAGAAAATCGTAAATTCAGAAGTTTGACTATTCTAGATTGGAAATTCTCAACAAAAAAATTTCAGCCTGAAATCAAAAAAAAAAAACCTAAATTTGAGCTATAATAGCCTAAATTTCCCCTAAATTTAAGCCTAAATAGCCTAAATTTGAGCTGTCTGGACCAGAAAAATACATATCTATTCCATTTTTCAGCGCCCAATTCGATCGCGCCTATAACAGTGGAAGCGGTGGAGGACAGGATCGTCCATCAGTCGATCCATTCGGACGTCCGATGTATTCAGGTAAGAGGGTTTTCAGAGAAACTTGGGGGGAAGAAACTGAAAAAAATGACCCAAAATTGAAAACAAAGACTTAAAAACACGGAAAAATGACCCAAAACAACCCTAAAAATCACCAAAAGTTGGAAAAATGGCCTAAAAACACTAAAAAGCTGACCCAAATCACCTGAATAATGATCTRAAAATTGGGAAAACGACTTTAAAAACTCAGAAATGGAACCTGAAAAATTAGAACAATCACTTAAAAAATAATAAAAAATGATCTAAAAATTAGAAAAATGGCCTGAAAATGAGGAATTCCAAGAATTGGCTAATAAAGTTCAAAAATGATATCATAATATTTACCGGGAAAAATGTTGCAAAAGTTGCTTTTTTATTAGAAAAGAAGAGCATCATCTCACTATTGTGTGATAAGGACTCCCTGGAATTATGATTGCACACATAGCTAAAACAAACTTTAACACCTATTTAGCTGCTCCGTTTGTAGAGCGTAAAATGAACTCATTTTATGTGTAAATTGACACAGAATTGTCAATTTTCGAGCTGAAACTCGCTATTTTTGACAGTTCAGGCGTTATAATTGAGCTGAAAACCACATTTAGAGCTAAAATTAGTCTTGGAACCATGATTATTGAAGCCAGAACATTGACAATGCCATTTTGGAGTCATTTTTCTTATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>471 245 162 59 30 26 7</canonical_bands>
                <polymorphic_bands>471 245 192 59 26 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTATTCAGGTAAGAGGGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGATTGTTCTAATTTTTCAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATGTATTCAGGTAAGAGGGTTTTCAGAGAAACTTGGGGGGAAGAAACTGAAAAAAATGACCCAAAATTGAAAACAAAGACTTAAAAACACGGAAAAATGACCCAAAACAACCCTAAAAATCACCAAAAGTTGGAAAAATGGCCTAAAAACACTAAAAAGCTGACCCAAATCACCTGAATAATGATCTGAAAATTGGGAAAACGACTTTAAAAACTCAGAAATGGAACCTGAAAAATTAGAACAATCA</canonical_amplicon>
		<polymorphic_amplicon>ATGTATTCAGGTAAGAGGGTTTTCAGAGAAACTTGGGGGGAAGAAACTGAAAAAAATGACCCAAAATTGAAAACAAAGACTTAAAAACACGGAAAAATGACCCAAAACAACCCTAAAAATCACCAAAAGTTGGAAAAATGGCCTAAAAACACTAAAAAGCTGACCCAAATCACCTGAATAATGATCTRAAAATTGGGAAAACGACTTTAAAAACTCAGAAATGGAACCTGAAAAATTAGAACAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5148</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>189688</contig_pos>
        <strand></strand>
        <context>GCCTGAAAAT[G/A]AGGAATTCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTAAAAAATAATAAAAAATGATCTAAAAATTAGAAAAATGGCCTGAAAAT</left_flank>
        <right_flank>AGGAATTCCAAGAATTGGCTAATAAAGTTCAAAAATGATATCATAATATT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCAAAAAAAAAAAACCTAAATTTGAGCTATAATAGCCTAAATTTCCCCTAAATTTAAGCCTAAATAGCCTAAATTTGAGCTGTCTGGACCAGAAAAATACATATCTATTCCATTTTTCAGCGCCCAATTCGATCGCGCCTATAACAGTGGAAGCGGTGGAGGACAGGATCGTCCATCAGTCGATCCATTCGGACGTCCGATGTATTCAGGTAAGAGGGTTTTCAGAGAAACTTGGGGGGAAGAAACTGAAAAAAATGACCCAAAATTGAAAACAAAGACTTAAAAACACGGAAAAATGACCCAAAACAACCCTAAAAATCACCAAAAGTTGGAAAAATGGCCTAAAAACACTAAAAAGCTGACCCAAATCACCTGAATAATGATCTGAAAATTGGGAAAACGACTTTAAAAACTCAGAAATGGAACCTGAAAAATTAGAACAATCACTTAAAAAATAATAAAAAATGATCTAAAAATTAGAAAAATGGCCTGAAAATGAGGAATTCCAAGAATTGGCTAATAAAGTTCAAAAATGATATCATAATATTTACCGGGAAAAATGTTGCAAAAGTTGCTTTTTTATTAGAAAAGAAGAGCATCATCTCACTATTGTGTGATAAGGACTCCCTGGAATTATGATTGCACACATAGCTAAAACAAACTTTAACACCTATTTAGCTGCTCCGTTTGTAGAGCGTAAAATGAACTCATTTTATGTGTAAATTGACACAGAATTGTCAATTTTCGAGCTGAAACTCGCTATTTTTGACAGTTCAGGCGTTATAATTGAGCTGAAAACCACATTTAGAGCTAAAATTAGTCTTGGAACCATGATTATTGAAGCCAGAACATTGACAATGCCATTTTGGAGTCATTTTTCTTATTTTTCTAGATATAGGGGCCCTAAAATGTCATTTTTGGAGTCATATGTAGTTTTGGAACCATGATTTTTGGAGTTATACGGATGAAAATGTCATTTATAGAGCCATTTTTCTTGT</canonical>
            <polymorphic>AATCAAAAAAAAAAAACCTAAATTTGAGCTATAATAGCCTAAATTTCCCCTAAATTTAAGCCTAAATAGCCTAAATTTGAGCTGTCTGGACCAGAAAAATACATATCTATTCCATTTTTCAGCGCCCAATTCGATCGCGCCTATAACAGTGGAAGCGGTGGAGGACAGGATCGTCCATCAGTCGATCCATTCGGACGTCCGATGTATTCAGGTAAGAGGGTTTTCAGAGAAACTTGGGGGGAAGAAACTGAAAAAAATGACCCAAAATTGAAAACAAAGACTTAAAAACACGGAAAAATGACCCAAAACAACCCTAAAAATCACCAAAAGTTGGAAAAATGGCCTAAAAACACTAAAAAGCTGACCCAAATCACCTGAATAATGATCTGAAAATTGGGAAAACGACTTTAAAAACTCAGAAATGGAACCTGAAAAATTAGAACAATCACTTAAAAAATAATAAAAAATGATCTAAAAATTAGAAAAATGGCCTGAAAATRAGGAATTCCAAGAATTGGCTAATAAAGTTCAAAAATGATATCATAATATTTACCGGGAAAAATGTTGCAAAAGTTGCTTTTTTATTAGAAAAGAAGAGCATCATCTCACTATTGTGTGATAAGGACTCCCTGGAATTATGATTGCACACATAGCTAAAACAAACTTTAACACCTATTTAGCTGCTCCGTTTGTAGAGCGTAAAATGAACTCATTTTATGTGTAAATTGACACAGAATTGTCAATTTTCGAGCTGAAACTCGCTATTTTTGACAGTTCAGGCGTTATAATTGAGCTGAAAACCACATTTAGAGCTAAAATTAGTCTTGGAACCATGATTATTGAAGCCAGAACATTGACAATGCCATTTTGGAGTCATTTTTCTTATTTTTCTAGATATAGGGGCCCTAAAATGTCATTTTTGGAGTCATATGTAGTTTTGGAACCATGATTTTTGGAGTTATACGGATGAAAATGTCATTTATAGAGCCATTTTTCTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCCAAATCACCTGAATAAT</pcr_primer_p1>
		<pcr_primer_p2>TAGTGAGATGATGCTCTTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GACCCAAATCACCTGAATAATGATCTGAAAATTGGGAAAACGACTTTAAAAACTCAGAAATGGAACCTGAAAAATTAGAACAATCACTTAAAAAATAATAAAAAATGATCTAAAAATTAGAAAAATGGCCTGAAAATGAGGAATTCCAAGAATTGGCTAATAAAGTTCAAAAATGATATCATAATATTTACCGGGAAAAATGTTGCAAAAGTTGCTTTTTTATTAGAAAAGAAGAGCATCATCTCACTA</canonical_amplicon>
		<polymorphic_amplicon>GACCCAAATCACCTGAATAATGATCTGAAAATTGGGAAAACGACTTTAAAAACTCAGAAATGGAACCTGAAAAATTAGAACAATCACTTAAAAAATAATAAAAAATGATCTAAAAATTAGAAAAATGGCCTGAAAATRAGGAATTCCAAGAATTGGCTAATAAAGTTCAAAAATGATATCATAATATTTACCGGGAAAAATGTTGCAAAAGTTGCTTTTTTATTAGAAAAGAAGAGCATCATCTCACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5149</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>189740</contig_pos>
        <strand></strand>
        <context>CATAATATTT[A/T]CCGGGAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAATTCCAAGAATTGGCTAATAAAGTTCAAAAATGATATCATAATATTT</left_flank>
        <right_flank>CCGGGAAAAATGTTGCAAAAGTTGCTTTTTTATTAGAAAAGAAGAGCATC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTAAGCCTAAATAGCCTAAATTTGAGCTGTCTGGACCAGAAAAATACATATCTATTCCATTTTTCAGCGCCCAATTCGATCGCGCCTATAACAGTGGAAGCGGTGGAGGACAGGATCGTCCATCAGTCGATCCATTCGGACGTCCGATGTATTCAGGTAAGAGGGTTTTCAGAGAAACTTGGGGGGAAGAAACTGAAAAAAATGACCCAAAATTGAAAACAAAGACTTAAAAACACGGAAAAATGACCCAAAACAACCCTAAAAATCACCAAAAGTTGGAAAAATGGCCTAAAAACACTAAAAAGCTGACCCAAATCACCTGAATAATGATCTGAAAATTGGGAAAACGACTTTAAAAACTCAGAAATGGAACCTGAAAAATTAGAACAATCACTTAAAAAATAATAAAAAATGATCTAAAAATTAGAAAAATGGCCTGAAAATGAGGAATTCCAAGAATTGGCTAATAAAGTTCAAAAATGATATCATAATATTTACCGGGAAAAATGTTGCAAAAGTTGCTTTTTTATTAGAAAAGAAGAGCATCATCTCACTATTGTGTGATAAGGACTCCCTGGAATTATGATTGCACACATAGCTAAAACAAACTTTAACACCTATTTAGCTGCTCCGTTTGTAGAGCGTAAAATGAACTCATTTTATGTGTAAATTGACACAGAATTGTCAATTTTCGAGCTGAAACTCGCTATTTTTGACAGTTCAGGCGTTATAATTGAGCTGAAAACCACATTTAGAGCTAAAATTAGTCTTGGAACCATGATTATTGAAGCCAGAACATTGACAATGCCATTTTGGAGTCATTTTTCTTATTTTTCTAGATATAGGGGCCCTAAAATGTCATTTTTGGAGTCATATGTAGTTTTGGAACCATGATTTTTGGAGTTATACGGATGAAAATGTCATTTATAGAGCCATTTTTCTTGTTTTTCTAGACAATTTGAGCACATATTTCTCCTATTTATCATCGTTTTTCTTT</canonical>
            <polymorphic>AATTTAAGCCTAAATAGCCTAAATTTGAGCTGTCTGGACCAGAAAAATACATATCTATTCCATTTTTCAGCGCCCAATTCGATCGCGCCTATAACAGTGGAAGCGGTGGAGGACAGGATCGTCCATCAGTCGATCCATTCGGACGTCCGATGTATTCAGGTAAGAGGGTTTTCAGAGAAACTTGGGGGGAAGAAACTGAAAAAAATGACCCAAAATTGAAAACAAAGACTTAAAAACACGGAAAAATGACCCAAAACAACCCTAAAAATCACCAAAAGTTGGAAAAATGGCCTAAAAACACTAAAAAGCTGACCCAAATCACCTGAATAATGATCTGAAAATTGGGAAAACGACTTTAAAAACTCAGAAATGGAACCTGAAAAATTAGAACAATCACTTAAAAAATAATAAAAAATGATCTAAAAATTAGAAAAATGGCCTGAAAATGAGGAATTCCAAGAATTGGCTAATAAAGTTCAAAAATGATATCATAATATTTWCCGGGAAAAATGTTGCAAAAGTTGCTTTTTTATTAGAAAAGAAGAGCATCATCTCACTATTGTGTGATAAGGACTCCCTGGAATTATGATTGCACACATAGCTAAAACAAACTTTAACACCTATTTAGCTGCTCCGTTTGTAGAGCGTAAAATGAACTCATTTTATGTGTAAATTGACACAGAATTGTCAATTTTCGAGCTGAAACTCGCTATTTTTGACAGTTCAGGCGTTATAATTGAGCTGAAAACCACATTTAGAGCTAAAATTAGTCTTGGAACCATGATTATTGAAGCCAGAACATTGACAATGCCATTTTGGAGTCATTTTTCTTATTTTTCTAGATATAGGGGCCCTAAAATGTCATTTTTGGAGTCATATGTAGTTTTGGAACCATGATTTTTGGAGTTATACGGATGAAAATGTCATTTATAGAGCCATTTTTCTTGTTTTTCTAGACAATTTGAGCACATATTTCTCCTATTTATCATCGTTTTTCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCCAAATCACCTGAATAAT</pcr_primer_p1>
		<pcr_primer_p2>TAGTGAGATGATGCTCTTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GACCCAAATCACCTGAATAATGATCTGAAAATTGGGAAAACGACTTTAAAAACTCAGAAATGGAACCTGAAAAATTAGAACAATCACTTAAAAAATAATAAAAAATGATCTAAAAATTAGAAAAATGGCCTGAAAATGAGGAATTCCAAGAATTGGCTAATAAAGTTCAAAAATGATATCATAATATTTACCGGGAAAAATGTTGCAAAAGTTGCTTTTTTATTAGAAAAGAAGAGCATCATCTCACTA</canonical_amplicon>
		<polymorphic_amplicon>GACCCAAATCACCTGAATAATGATCTGAAAATTGGGAAAACGACTTTAAAAACTCAGAAATGGAACCTGAAAAATTAGAACAATCACTTAAAAAATAATAAAAAATGATCTAAAAATTAGAAAAATGGCCTGAAAATGAGGAATTCCAAGAATTGGCTAATAAAGTTCAAAAATGATATCATAATATTTWCCGGGAAAAATGTTGCAAAAGTTGCTTTTTTATTAGAAAAGAAGAGCATCATCTCACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5150</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>189839</contig_pos>
        <strand></strand>
        <context>ATTGCACACA[T/A]AGCTARAACA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCATCTCACTATTGTGTGATAAGGACTCCCTGGAATTATGATTGCACACA</left_flank>
        <right_flank>AGCTAAAACAAACTTTAACACCTATTTAGCTGCTCCGTTTGTAGAGCGTA</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGCGGTGGAGGACAGGATCGTCCATCAGTCGATCCATTCGGACGTCCGATGTATTCAGGTAAGAGGGTTTTCAGAGAAACTTGGGGGGAAGAAACTGAAAAAAATGACCCAAAATTGAAAACAAAGACTTAAAAACACGGAAAAATGACCCAAAACAACCCTAAAAATCACCAAAAGTTGGAAAAATGGCCTAAAAACACTAAAAAGCTGACCCAAATCACCTGAATAATGATCTGAAAATTGGGAAAACGACTTTAAAAACTCAGAAATGGAACCTGAAAAATTAGAACAATCACTTAAAAAATAATAAAAAATGATCTAAAAATTAGAAAAATGGCCTGAAAATGAGGAATTCCAAGAATTGGCTAATAAAGTTCAAAAATGATATCATAATATTTACCGGGAAAAATGTTGCAAAAGTTGCTTTTTTATTAGAAAAGAAGAGCATCATCTCACTATTGTGTGATAAGGACTCCCTGGAATTATGATTGCACACATAGCTAAAACAAACTTTAACACCTATTTAGCTGCTCCGTTTGTAGAGCGTAAAATGAACTCATTTTATGTGTAAATTGACACAGAATTGTCAATTTTCGAGCTGAAACTCGCTATTTTTGACAGTTCAGGCGTTATAATTGAGCTGAAAACCACATTTAGAGCTAAAATTAGTCTTGGAACCATGATTATTGAAGCCAGAACATTGACAATGCCATTTTGGAGTCATTTTTCTTATTTTTCTAGATATAGGGGCCCTAAAATGTCATTTTTGGAGTCATATGTAGTTTTGGAACCATGATTTTTGGAGTTATACGGATGAAAATGTCATTTATAGAGCCATTTTTCTTGTTTTTCTAGACAATTTGAGCACATATTTCTCCTATTTATCATCGTTTTTCTTTCAGTTCCCGCCTTCTCCAACTCGTCCTCATCGTCATTCCGTCATGACGATCATCGAGGAGGAAGCGGTGGTTTTGGCTCGTCGTCATCATTCGAGTGAG</canonical>
            <polymorphic>GAAGCGGTGGAGGACAGGATCGTCCATCAGTCGATCCATTCGGACGTCCGATGTATTCAGGTAAGAGGGTTTTCAGAGAAACTTGGGGGGAAGAAACTGAAAAAAATGACCCAAAATTGAAAACAAAGACTTAAAAACACGGAAAAATGACCCAAAACAACCCTAAAAATCACCAAAAGTTGGAAAAATGGCCTAAAAACACTAAAAAGCTGACCCAAATCACCTGAATAATGATCTGAAAATTGGGAAAACGACTTTAAAAACTCAGAAATGGAACCTGAAAAATTAGAACAATCACTTAAAAAATAATAAAAAATGATCTAAAAATTAGAAAAATGGCCTGAAAATGAGGAATTCCAAGAATTGGCTAATAAAGTTCAAAAATGATATCATAATATTTACCGGGAAAAATGTTGCAAAAGTTGCTTTTTTATTAGAAAAGAAGAGCATCATCTCACTATTGTGTGATAAGGACTCCCTGGAATTATGATTGCACACAWAGCTAAAACAAACTTTAACACCTATTTAGCTGCTCCGTTTGTAGAGCGTAAAATGAACTCATTTTATGTGTAAATTGACACAGAATTGTCAATTTTCGAGCTGAAACTCGCTATTTTTGACAGTTCAGGCGTTATAATTGAGCTGAAAACCACATTTAGAGCTAAAATTAGTCTTGGAACCATGATTATTGAAGCCAGAACATTGACAATGCCATTTTGGAGTCATTTTTCTTATTTTTCTAGATATAGGGGCCCTAAAATGTCATTTTTGGAGTCATATGTAGTTTTGGAACCATGATTTTTGGAGTTATACGGATGAAAATGTCATTTATAGAGCCATTTTTCTTGTTTTTCTAGACAATTTGAGCACATATTTCTCCTATTTATCATCGTTTTTCTTTCAGTTCCCGCCTTCTCCAACTCGTCCTCATCGTCATTCCGTCATGACGATCATCGAGGAGGAAGCGGTGGTTTTGGCTCGTCGTCATCATTCGAGTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAAGAGCATCATCTCACTA</pcr_primer_p1>
		<pcr_primer_p2>AATCATGGTTCCAAGACTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAAGAGCATCATCTCACTATTGTGTGATAAGGACTCCCTGGAATTATGATTGCACACATAGCTAAAACAAACTTTAACACCTATTTAGCTGCTCCGTTTGTAGAGCGTAAAATGAACTCATTTTATGTGTAAATTGACACAGAATTGTCAATTTTCGAGCTGAAACTCGCTATTTTTGACAGTTCAGGCGTTATAATTGAGCTGAAAACCACATTTAGAGCTAAAATTAGTCTTGGAACCATGATT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAAGAGCATCATCTCACTATTGTGTGATAAGGACTCCCTGGAATTATGATTGCACACAWAGCTAAAACAAACTTTAACACCTATTTAGCTGCTCCGTTTGTAGAGCGTAAAATGAACTCATTTTATGTGTAAATTGACACAGAATTGTCAATTTTCGAGCTGAAACTCGCTATTTTTGACAGTTCAGGCGTTATAATTGAGCTGAAAACCACATTTAGAGCTAAAATTAGTCTTGGAACCATGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5151</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>189845</contig_pos>
        <strand></strand>
        <context>CACAWAGCTA[A/G]AACAAACTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACTATTGTGTGATAAGGACTCCCTGGAATTATGATTGCACACATAGCTA</left_flank>
        <right_flank>AACAAACTTTAACACCTATTTAGCTGCTCCGTTTGTAGAGCGTAAAATGA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGAGGACAGGATCGTCCATCAGTCGATCCATTCGGACGTCCGATGTATTCAGGTAAGAGGGTTTTCAGAGAAACTTGGGGGGAAGAAACTGAAAAAAATGACCCAAAATTGAAAACAAAGACTTAAAAACACGGAAAAATGACCCAAAACAACCCTAAAAATCACCAAAAGTTGGAAAAATGGCCTAAAAACACTAAAAAGCTGACCCAAATCACCTGAATAATGATCTGAAAATTGGGAAAACGACTTTAAAAACTCAGAAATGGAACCTGAAAAATTAGAACAATCACTTAAAAAATAATAAAAAATGATCTAAAAATTAGAAAAATGGCCTGAAAATGAGGAATTCCAAGAATTGGCTAATAAAGTTCAAAAATGATATCATAATATTTACCGGGAAAAATGTTGCAAAAGTTGCTTTTTTATTAGAAAAGAAGAGCATCATCTCACTATTGTGTGATAAGGACTCCCTGGAATTATGATTGCACACATAGCTAAAACAAACTTTAACACCTATTTAGCTGCTCCGTTTGTAGAGCGTAAAATGAACTCATTTTATGTGTAAATTGACACAGAATTGTCAATTTTCGAGCTGAAACTCGCTATTTTTGACAGTTCAGGCGTTATAATTGAGCTGAAAACCACATTTAGAGCTAAAATTAGTCTTGGAACCATGATTATTGAAGCCAGAACATTGACAATGCCATTTTGGAGTCATTTTTCTTATTTTTCTAGATATAGGGGCCCTAAAATGTCATTTTTGGAGTCATATGTAGTTTTGGAACCATGATTTTTGGAGTTATACGGATGAAAATGTCATTTATAGAGCCATTTTTCTTGTTTTTCTAGACAATTTGAGCACATATTTCTCCTATTTATCATCGTTTTTCTTTCAGTTCCCGCCTTCTCCAACTCGTCCTCATCGTCATTCCGTCATGACGATCATCGAGGAGGAAGCGGTGGTTTTGGCTCGTCGTCATCATTCGAGTGAGTTTTTC</canonical>
            <polymorphic>GTGGAGGACAGGATCGTCCATCAGTCGATCCATTCGGACGTCCGATGTATTCAGGTAAGAGGGTTTTCAGAGAAACTTGGGGGGAAGAAACTGAAAAAAATGACCCAAAATTGAAAACAAAGACTTAAAAACACGGAAAAATGACCCAAAACAACCCTAAAAATCACCAAAAGTTGGAAAAATGGCCTAAAAACACTAAAAAGCTGACCCAAATCACCTGAATAATGATCTGAAAATTGGGAAAACGACTTTAAAAACTCAGAAATGGAACCTGAAAAATTAGAACAATCACTTAAAAAATAATAAAAAATGATCTAAAAATTAGAAAAATGGCCTGAAAATGAGGAATTCCAAGAATTGGCTAATAAAGTTCAAAAATGATATCATAATATTTACCGGGAAAAATGTTGCAAAAGTTGCTTTTTTATTAGAAAAGAAGAGCATCATCTCACTATTGTGTGATAAGGACTCCCTGGAATTATGATTGCACACATAGCTARAACAAACTTTAACACCTATTTAGCTGCTCCGTTTGTAGAGCGTAAAATGAACTCATTTTATGTGTAAATTGACACAGAATTGTCAATTTTCGAGCTGAAACTCGCTATTTTTGACAGTTCAGGCGTTATAATTGAGCTGAAAACCACATTTAGAGCTAAAATTAGTCTTGGAACCATGATTATTGAAGCCAGAACATTGACAATGCCATTTTGGAGTCATTTTTCTTATTTTTCTAGATATAGGGGCCCTAAAATGTCATTTTTGGAGTCATATGTAGTTTTGGAACCATGATTTTTGGAGTTATACGGATGAAAATGTCATTTATAGAGCCATTTTTCTTGTTTTTCTAGACAATTTGAGCACATATTTCTCCTATTTATCATCGTTTTTCTTTCAGTTCCCGCCTTCTCCAACTCGTCCTCATCGTCATTCCGTCATGACGATCATCGAGGAGGAAGCGGTGGTTTTGGCTCGTCGTCATCATTCGAGTGAGTTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAAGAGCATCATCTCACTA</pcr_primer_p1>
		<pcr_primer_p2>AATCATGGTTCCAAGACTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAAGAGCATCATCTCACTATTGTGTGATAAGGACTCCCTGGAATTATGATTGCACACATAGCTAAAACAAACTTTAACACCTATTTAGCTGCTCCGTTTGTAGAGCGTAAAATGAACTCATTTTATGTGTAAATTGACACAGAATTGTCAATTTTCGAGCTGAAACTCGCTATTTTTGACAGTTCAGGCGTTATAATTGAGCTGAAAACCACATTTAGAGCTAAAATTAGTCTTGGAACCATGATT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAAGAGCATCATCTCACTATTGTGTGATAAGGACTCCCTGGAATTATGATTGCACACATAGCTARAACAAACTTTAACACCTATTTAGCTGCTCCGTTTGTAGAGCGTAAAATGAACTCATTTTATGTGTAAATTGACACAGAATTGTCAATTTTCGAGCTGAAACTCGCTATTTTTGACAGTTCAGGCGTTATAATTGAGCTGAAAACCACATTTAGAGCTAAAATTAGTCTTGGAACCATGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5152</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>189896</contig_pos>
        <strand></strand>
        <context>CGTAAAATGA[A/T]CTCATTTTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACAAACTTTAACACCTATTTAGCTGCTCCGTTTGTAGAGCGTAAAATGA</left_flank>
        <right_flank>CTCATTTTATGTGTAAATTGACACAGAATTGTCAATTTTCGAGCTGAAAC</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGGTAAGAGGGTTTTCAGAGAAACTTGGGGGGAAGAAACTGAAAAAAATGACCCAAAATTGAAAACAAAGACTTAAAAACACGGAAAAATGACCCAAAACAACCCTAAAAATCACCAAAAGTTGGAAAAATGGCCTAAAAACACTAAAAAGCTGACCCAAATCACCTGAATAATGATCTGAAAATTGGGAAAACGACTTTAAAAACTCAGAAATGGAACCTGAAAAATTAGAACAATCACTTAAAAAATAATAAAAAATGATCTAAAAATTAGAAAAATGGCCTGAAAATGAGGAATTCCAAGAATTGGCTAATAAAGTTCAAAAATGATATCATAATATTTACCGGGAAAAATGTTGCAAAAGTTGCTTTTTTATTAGAAAAGAAGAGCATCATCTCACTATTGTGTGATAAGGACTCCCTGGAATTATGATTGCACACATAGCTAAAACAAACTTTAACACCTATTTAGCTGCTCCGTTTGTAGAGCGTAAAATGAACTCATTTTATGTGTAAATTGACACAGAATTGTCAATTTTCGAGCTGAAACTCGCTATTTTTGACAGTTCAGGCGTTATAATTGAGCTGAAAACCACATTTAGAGCTAAAATTAGTCTTGGAACCATGATTATTGAAGCCAGAACATTGACAATGCCATTTTGGAGTCATTTTTCTTATTTTTCTAGATATAGGGGCCCTAAAATGTCATTTTTGGAGTCATATGTAGTTTTGGAACCATGATTTTTGGAGTTATACGGATGAAAATGTCATTTATAGAGCCATTTTTCTTGTTTTTCTAGACAATTTGAGCACATATTTCTCCTATTTATCATCGTTTTTCTTTCAGTTCCCGCCTTCTCCAACTCGTCCTCATCGTCATTCCGTCATGACGATCATCGAGGAGGAAGCGGTGGTTTTGGCTCGTCGTCATCATTCGAGTGAGTTTTTCCCTTCCTTTCTTTATTATTGTTATTTTTGCTCTGGAATTTTCTAATTGAAT</canonical>
            <polymorphic>CAGGTAAGAGGGTTTTCAGAGAAACTTGGGGGGAAGAAACTGAAAAAAATGACCCAAAATTGAAAACAAAGACTTAAAAACACGGAAAAATGACCCAAAACAACCCTAAAAATCACCAAAAGTTGGAAAAATGGCCTAAAAACACTAAAAAGCTGACCCAAATCACCTGAATAATGATCTGAAAATTGGGAAAACGACTTTAAAAACTCAGAAATGGAACCTGAAAAATTAGAACAATCACTTAAAAAATAATAAAAAATGATCTAAAAATTAGAAAAATGGCCTGAAAATGAGGAATTCCAAGAATTGGCTAATAAAGTTCAAAAATGATATCATAATATTTACCGGGAAAAATGTTGCAAAAGTTGCTTTTTTATTAGAAAAGAAGAGCATCATCTCACTATTGTGTGATAAGGACTCCCTGGAATTATGATTGCACACATAGCTAAAACAAACTTTAACACCTATTTAGCTGCTCCGTTTGTAGAGCGTAAAATGAWCTCATTTTATGTGTAAATTGACACAGAATTGTCAATTTTCGAGCTGAAACTCGCTATTTTTGACAGTTCAGGCGTTATAATTGAGCTGAAAACCACATTTAGAGCTAAAATTAGTCTTGGAACCATGATTATTGAAGCCAGAACATTGACAATGCCATTTTGGAGTCATTTTTCTTATTTTTCTAGATATAGGGGCCCTAAAATGTCATTTTTGGAGTCATATGTAGTTTTGGAACCATGATTTTTGGAGTTATACGGATGAAAATGTCATTTATAGAGCCATTTTTCTTGTTTTTCTAGACAATTTGAGCACATATTTCTCCTATTTATCATCGTTTTTCTTTCAGTTCCCGCCTTCTCCAACTCGTCCTCATCGTCATTCCGTCATGACGATCATCGAGGAGGAAGCGGTGGTTTTGGCTCGTCGTCATCATTCGAGTGAGTTTTTCCCTTCCTTTCTTTATTATTGTTATTTTTGCTCTGGAATTTTCTAATTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAAGAGCATCATCTCACTA</pcr_primer_p1>
		<pcr_primer_p2>AATCATGGTTCCAAGACTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAAGAGCATCATCTCACTATTGTGTGATAAGGACTCCCTGGAATTATGATTGCACACATAGCTAAAACAAACTTTAACACCTATTTAGCTGCTCCGTTTGTAGAGCGTAAAATGAACTCATTTTATGTGTAAATTGACACAGAATTGTCAATTTTCGAGCTGAAACTCGCTATTTTTGACAGTTCAGGCGTTATAATTGAGCTGAAAACCACATTTAGAGCTAAAATTAGTCTTGGAACCATGATT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAAGAGCATCATCTCACTATTGTGTGATAAGGACTCCCTGGAATTATGATTGCACACATAGCTAAAACAAACTTTAACACCTATTTAGCTGCTCCGTTTGTAGAGCGTAAAATGAWCTCATTTTATGTGTAAATTGACACAGAATTGTCAATTTTCGAGCTGAAACTCGCTATTTTTGACAGTTCAGGCGTTATAATTGAGCTGAAAACCACATTTAGAGCTAAAATTAGTCTTGGAACCATGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5153</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>189921</contig_pos>
        <strand></strand>
        <context>AAATTGACAC[A/T]GAATTGTCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTCCGTTTGTAGAGCGTAAAATGAACTCATTTTATGTGTAAATTGACAC</left_flank>
        <right_flank>GAATTGTCAATTTTCGAGCTGAAACTCGCTATTTTTGACAGTTCAGGCGT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGGGGGAAGAAACTGAAAAAAATGACCCAAAATTGAAAACAAAGACTTAAAAACACGGAAAAATGACCCAAAACAACCCTAAAAATCACCAAAAGTTGGAAAAATGGCCTAAAAACACTAAAAAGCTGACCCAAATCACCTGAATAATGATCTGAAAATTGGGAAAACGACTTTAAAAACTCAGAAATGGAACCTGAAAAATTAGAACAATCACTTAAAAAATAATAAAAAATGATCTAAAAATTAGAAAAATGGCCTGAAAATGAGGAATTCCAAGAATTGGCTAATAAAGTTCAAAAATGATATCATAATATTTACCGGGAAAAATGTTGCAAAAGTTGCTTTTTTATTAGAAAAGAAGAGCATCATCTCACTATTGTGTGATAAGGACTCCCTGGAATTATGATTGCACACATAGCTAAAACAAACTTTAACACCTATTTAGCTGCTCCGTTTGTAGAGCGTAAAATGAACTCATTTTATGTGTAAATTGACACAGAATTGTCAATTTTCGAGCTGAAACTCGCTATTTTTGACAGTTCAGGCGTTATAATTGAGCTGAAAACCACATTTAGAGCTAAAATTAGTCTTGGAACCATGATTATTGAAGCCAGAACATTGACAATGCCATTTTGGAGTCATTTTTCTTATTTTTCTAGATATAGGGGCCCTAAAATGTCATTTTTGGAGTCATATGTAGTTTTGGAACCATGATTTTTGGAGTTATACGGATGAAAATGTCATTTATAGAGCCATTTTTCTTGTTTTTCTAGACAATTTGAGCACATATTTCTCCTATTTATCATCGTTTTTCTTTCAGTTCCCGCCTTCTCCAACTCGTCCTCATCGTCATTCCGTCATGACGATCATCGAGGAGGAAGCGGTGGTTTTGGCTCGTCGTCATCATTCGAGTGAGTTTTTCCCTTCCTTTCTTTATTATTGTTATTTTTGCTCTGGAATTTTCTAATTGAATTGACTCGCCCCTTCGCGGAAAATAA</canonical>
            <polymorphic>TTGGGGGGAAGAAACTGAAAAAAATGACCCAAAATTGAAAACAAAGACTTAAAAACACGGAAAAATGACCCAAAACAACCCTAAAAATCACCAAAAGTTGGAAAAATGGCCTAAAAACACTAAAAAGCTGACCCAAATCACCTGAATAATGATCTGAAAATTGGGAAAACGACTTTAAAAACTCAGAAATGGAACCTGAAAAATTAGAACAATCACTTAAAAAATAATAAAAAATGATCTAAAAATTAGAAAAATGGCCTGAAAATGAGGAATTCCAAGAATTGGCTAATAAAGTTCAAAAATGATATCATAATATTTACCGGGAAAAATGTTGCAAAAGTTGCTTTTTTATTAGAAAAGAAGAGCATCATCTCACTATTGTGTGATAAGGACTCCCTGGAATTATGATTGCACACATAGCTAAAACAAACTTTAACACCTATTTAGCTGCTCCGTTTGTAGAGCGTAAAATGAACTCATTTTATGTGTAAATTGACACWGAATTGTCAATTTTCGAGCTGAAACTCGCTATTTTTGACAGTTCAGGCGTTATAATTGAGCTGAAAACCACATTTAGAGCTAAAATTAGTCTTGGAACCATGATTATTGAAGCCAGAACATTGACAATGCCATTTTGGAGTCATTTTTCTTATTTTTCTAGATATAGGGGCCCTAAAATGTCATTTTTGGAGTCATATGTAGTTTTGGAACCATGATTTTTGGAGTTATACGGATGAAAATGTCATTTATAGAGCCATTTTTCTTGTTTTTCTAGACAATTTGAGCACATATTTCTCCTATTTATCATCGTTTTTCTTTCAGTTCCCGCCTTCTCCAACTCGTCCTCATCGTCATTCCGTCATGACGATCATCGAGGAGGAAGCGGTGGTTTTGGCTCGTCGTCATCATTCGAGTGAGTTTTTCCCTTCCTTTCTTTATTATTGTTATTTTTGCTCTGGAATTTTCTAATTGAATTGACTCGCCCCTTCGCGGAAAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAAGAGCATCATCTCACTA</pcr_primer_p1>
		<pcr_primer_p2>AATCATGGTTCCAAGACTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAAGAGCATCATCTCACTATTGTGTGATAAGGACTCCCTGGAATTATGATTGCACACATAGCTAAAACAAACTTTAACACCTATTTAGCTGCTCCGTTTGTAGAGCGTAAAATGAACTCATTTTATGTGTAAATTGACACAGAATTGTCAATTTTCGAGCTGAAACTCGCTATTTTTGACAGTTCAGGCGTTATAATTGAGCTGAAAACCACATTTAGAGCTAAAATTAGTCTTGGAACCATGATT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAAGAGCATCATCTCACTATTGTGTGATAAGGACTCCCTGGAATTATGATTGCACACATAGCTAAAACAAACTTTAACACCTATTTAGCTGCTCCGTTTGTAGAGCGTAAAATGAACTCATTTTATGTGTAAATTGACACWGAATTGTCAATTTTCGAGCTGAAACTCGCTATTTTTGACAGTTCAGGCGTTATAATTGAGCTGAAAACCACATTTAGAGCTAAAATTAGTCTTGGAACCATGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5154</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>189936</contig_pos>
        <strand></strand>
        <context>TGTCAATTTT[C/T]GAGCTGAAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTAAAATGAACTCATTTTATGTGTAAATTGACACAGAATTGTCAATTTT</left_flank>
        <right_flank>GAGCTGAAACTCGCTATTTTTGACAGTTCAGGCGTTATAATTGAGCTGAA</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAAAAAATGACCCAAAATTGAAAACAAAGACTTAAAAACACGGAAAAATGACCCAAAACAACCCTAAAAATCACCAAAAGTTGGAAAAATGGCCTAAAAACACTAAAAAGCTGACCCAAATCACCTGAATAATGATCTGAAAATTGGGAAAACGACTTTAAAAACTCAGAAATGGAACCTGAAAAATTAGAACAATCACTTAAAAAATAATAAAAAATGATCTAAAAATTAGAAAAATGGCCTGAAAATGAGGAATTCCAAGAATTGGCTAATAAAGTTCAAAAATGATATCATAATATTTACCGGGAAAAATGTTGCAAAAGTTGCTTTTTTATTAGAAAAGAAGAGCATCATCTCACTATTGTGTGATAAGGACTCCCTGGAATTATGATTGCACACATAGCTAAAACAAACTTTAACACCTATTTAGCTGCTCCGTTTGTAGAGCGTAAAATGAACTCATTTTATGTGTAAATTGACACAGAATTGTCAATTTTCGAGCTGAAACTCGCTATTTTTGACAGTTCAGGCGTTATAATTGAGCTGAAAACCACATTTAGAGCTAAAATTAGTCTTGGAACCATGATTATTGAAGCCAGAACATTGACAATGCCATTTTGGAGTCATTTTTCTTATTTTTCTAGATATAGGGGCCCTAAAATGTCATTTTTGGAGTCATATGTAGTTTTGGAACCATGATTTTTGGAGTTATACGGATGAAAATGTCATTTATAGAGCCATTTTTCTTGTTTTTCTAGACAATTTGAGCACATATTTCTCCTATTTATCATCGTTTTTCTTTCAGTTCCCGCCTTCTCCAACTCGTCCTCATCGTCATTCCGTCATGACGATCATCGAGGAGGAAGCGGTGGTTTTGGCTCGTCGTCATCATTCGAGTGAGTTTTTCCCTTCCTTTCTTTATTATTGTTATTTTTGCTCTGGAATTTTCTAATTGAATTGACTCGCCCCTTCGCGGAAAATAAAGGGAAAAATAGGGA</canonical>
            <polymorphic>TGAAAAAAATGACCCAAAATTGAAAACAAAGACTTAAAAACACGGAAAAATGACCCAAAACAACCCTAAAAATCACCAAAAGTTGGAAAAATGGCCTAAAAACACTAAAAAGCTGACCCAAATCACCTGAATAATGATCTGAAAATTGGGAAAACGACTTTAAAAACTCAGAAATGGAACCTGAAAAATTAGAACAATCACTTAAAAAATAATAAAAAATGATCTAAAAATTAGAAAAATGGCCTGAAAATGAGGAATTCCAAGAATTGGCTAATAAAGTTCAAAAATGATATCATAATATTTACCGGGAAAAATGTTGCAAAAGTTGCTTTTTTATTAGAAAAGAAGAGCATCATCTCACTATTGTGTGATAAGGACTCCCTGGAATTATGATTGCACACATAGCTAAAACAAACTTTAACACCTATTTAGCTGCTCCGTTTGTAGAGCGTAAAATGAACTCATTTTATGTGTAAATTGACACAGAATTGTCAATTTTYGAGCTGAAACTCGCTATTTTTGACAGTTCAGGCGTTATAATTGAGCTGAAAACCACATTTAGAGCTAAAATTAGTCTTGGAACCATGATTATTGAAGCCAGAACATTGACAATGCCATTTTGGAGTCATTTTTCTTATTTTTCTAGATATAGGGGCCCTAAAATGTCATTTTTGGAGTCATATGTAGTTTTGGAACCATGATTTTTGGAGTTATACGGATGAAAATGTCATTTATAGAGCCATTTTTCTTGTTTTTCTAGACAATTTGAGCACATATTTCTCCTATTTATCATCGTTTTTCTTTCAGTTCCCGCCTTCTCCAACTCGTCCTCATCGTCATTCCGTCATGACGATCATCGAGGAGGAAGCGGTGGTTTTGGCTCGTCGTCATCATTCGAGTGAGTTTTTCCCTTCCTTTCTTTATTATTGTTATTTTTGCTCTGGAATTTTCTAATTGAATTGACTCGCCCCTTCGCGGAAAATAAAGGGAAAAATAGGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 358 104 38</canonical_bands>
                <polymorphic_bands>858 104 38</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAAGAGCATCATCTCACTA</pcr_primer_p1>
		<pcr_primer_p2>AATCATGGTTCCAAGACTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAAGAGCATCATCTCACTATTGTGTGATAAGGACTCCCTGGAATTATGATTGCACACATAGCTAAAACAAACTTTAACACCTATTTAGCTGCTCCGTTTGTAGAGCGTAAAATGAACTCATTTTATGTGTAAATTGACACAGAATTGTCAATTTTCGAGCTGAAACTCGCTATTTTTGACAGTTCAGGCGTTATAATTGAGCTGAAAACCACATTTAGAGCTAAAATTAGTCTTGGAACCATGATT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAAGAGCATCATCTCACTATTGTGTGATAAGGACTCCCTGGAATTATGATTGCACACATAGCTAAAACAAACTTTAACACCTATTTAGCTGCTCCGTTTGTAGAGCGTAAAATGAACTCATTTTATGTGTAAATTGACACAGAATTGTCAATTTTYGAGCTGAAACTCGCTATTTTTGACAGTTCAGGCGTTATAATTGAGCTGAAAACCACATTTAGAGCTAAAATTAGTCTTGGAACCATGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5156</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>191509</contig_pos>
        <strand>+</strand>
        <context>ATAACRAGAA[A/G]ACGTGCGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAAGCCTTTATAGAAAAAAGAGTGAAATTGGAAGAGAAAATAACGAGAA</left_flank>
        <right_flank>ACGTGCGAAAAGTGACTAGAAAATACACTTTTTTCTTCTTCAGAGAGACG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTGAATTTTGACCTATTTTAAGGCAAACTTTAAACTAGCTTTCGAGACTAGAATTTAGCTAAATTATGGCAAATTTTTGGGCTCATTTTCAGGGCTAAATTTAGCTAATCTTTAATCCTTTTTTAGGCTCTTTACCAGGTCTAAAATTCAGTTTCTGCCATTAGAGATGTTCTAATCTCAATATATCCTTGACCGTTTTTCTACCTTTTTTCCCTCTTTTTCTTGATCCTATCCTCATTCTTCTATTTTCTTTTCTTTCCTCCGCCCGTGTTTCTTCATGACGCAATTCGTATCTCTGCGTCTCTCTCCAGCAGTCCCTCTATCTCTTTATCTCTAACTTTTCACGCACAGCCCGTATGGTTGTTGGTTACAAATCACTCATATATGAACCATAACAATTGGATGTTTCTCTGTAGATTTAGATTCATTTTCTGATGACCTCTTTTGCCAAGCCTTTATAGAAAAAAGAGTGAAATTGGAAGAGAAAATAACGAGAAGACGTGCGAAAAGTGACTAGAAAATACACTTTTTTCTTCTTCAGAGAGACGTAGAGATAGAATTCTGATGAACACTTGATTCTTTGGGTTTTCTCTGGGTGGCCTAATGGATTTTTGGCTATTTTAACGCTATTTTTGAACTAGATTTGATTGAAATTCTGTACTAATTACGAAATTACTGCTCAACTAGAGCTTGCCTTAATTCCAGTAGGTTTAGATTCAGATTTCATATAGTTCAGATTCATTTTTAAAGCATTCGCAAAGTTTCAGCTTTTTTCTCCTTCAAAATTCCGACCTGTCTACGTCACACTTGCCCTCCTACTCCTTATCAGATTCTCCTTGTCAGACTGCTCATATCTCACCTACCATACCCCTCTAGGGCTCTTCCAGCAACCACTAAGCTCCGCCTTCCTGGCGGCTACTGACTTCTAGGAGCCTTAGGAATTTTCATTTGATTTATTGCTGAGCATCATCATCATCATCTTCTTCTATTCTAACCAA</canonical>
            <polymorphic>GGCTGAATTTTGACCTATTTTAAGGCAAACTTTAAACTAGCTTTCGAGACTAGAATTTAGCTAAATTATGGCAAATTTTTGGGCTCATTTTCAGGGCTAAATTTAGCTAATCTTTAATCCTTTTTTAGGCTCTTTACCAGGTCTAAAATTCAGTTTCTGCCATTAGAGATGTTCTAATCTCAATATATCCTTGACCGTTTTTCTACCTTTTTTCCCTCTTTTTCTTGATCCTATCCTCATTCTTCTATTTTCTTTTCTTTCCTCCGCCCGTGTTTCTTCATGACGCAATTCGTATCTCTGCGTCTCTCTCCAGCAGTCCCTCTATCTCTTTATCTCTAACTTTTCACGCACAGCCCGTATGGTTGTTGGTTACAAATCACTCATATATGAACCATAACAATTGGATGTTTCTCTGTAGATTTAGATTCATTTTCTGATGACCTCTTTTGCCAAGCCTTTATAGAAAAAAGAGTGAAATTGGAAGAGAAAATAACGAGAARACGTGCGAAAAGTGACTAGAAAATACACTTTTTTCTTCTTCAGAGAGACGTAGAGATAGAATTCTGATGAACACTTGATTCTTTGGGTTTTCTCTGGGTGGCCTAATGGATTTTTGGCTATTTTAACGCTATTTTTGAACTAGATTTGATTGAAATTCTGTACTAATTACGAAATTACTGCTCAACTAGAGCTTGCCTTAATTCCAGTAGGTTTAGATTCAGATTTCATATAGTTCAGATTCATTTTTAAAGCATTCGCAAAGTTTCAGCTTTTTTCTCCTTCAAAATTCCGACCTGTCTACGTCACACTTGCCCTCCTACTCCTTATCAGATTCTCCTTGTCAGACTGCTCATATCTCACCTACCATACCCCTCTAGGGCTCTTCCAGCAACCACTAAGCTCCGCCTTCCTGGCGGCTACTGACTTCTAGGAGCCTTAGGAATTTTCATTTGATTTATTGCTGAGCATCATCATCATCATCTTCTTCTATTCTAACCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCATAACAATTGGATGTTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAAATAGCGTTAAAATAGC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACCATAACAATTGGATGTTTCTCTGTAGATTTAGATTCATTTTCTGATGACCTCTTTTGCCAAGCCTTTATAGAAAAAAGAGTGAAATTGGAAGAGAAAATAACGAGAAGACGTGCGAAAAGTGACTAGAAAATACACTTTTTTCTTCTTCAGAGAGACGTAGAGATAGAATTCTGATGAACACTTGATTCTTTGGGTTTTCTCTGGGTGGCCTAATGGATTTTTGGCTATTTTAACGCTATTTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>ACCATAACAATTGGATGTTTCTCTGTAGATTTAGATTCATTTTCTGATGACCTCTTTTGCCAAGCCTTTATAGAAAAAAGAGTGAAATTGGAAGAGAAAATAACGAGAARACGTGCGAAAAGTGACTAGAAAATACACTTTTTTCTTCTTCAGAGAGACGTAGAGATAGAATTCTGATGAACACTTGATTCTTTGGGTTTTCTCTGGGTGGCCTAATGGATTTTTGGCTATTTTAACGCTATTTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5157</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>191504</contig_pos>
        <strand>+</strand>
        <context>AGAAAATAAC[A/G]AGAARACGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGCCAAGCCTTTATAGAAAAAAGAGTGAAATTGGAAGAGAAAATAAC</left_flank>
        <right_flank>AGAAGACGTGCGAAAAGTGACTAGAAAATACACTTTTTTCTTCTTCAGAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCGGCTGAATTTTGACCTATTTTAAGGCAAACTTTAAACTAGCTTTCGAGACTAGAATTTAGCTAAATTATGGCAAATTTTTGGGCTCATTTTCAGGGCTAAATTTAGCTAATCTTTAATCCTTTTTTAGGCTCTTTACCAGGTCTAAAATTCAGTTTCTGCCATTAGAGATGTTCTAATCTCAATATATCCTTGACCGTTTTTCTACCTTTTTTCCCTCTTTTTCTTGATCCTATCCTCATTCTTCTATTTTCTTTTCTTTCCTCCGCCCGTGTTTCTTCATGACGCAATTCGTATCTCTGCGTCTCTCTCCAGCAGTCCCTCTATCTCTTTATCTCTAACTTTTCACGCACAGCCCGTATGGTTGTTGGTTACAAATCACTCATATATGAACCATAACAATTGGATGTTTCTCTGTAGATTTAGATTCATTTTCTGATGACCTCTTTTGCCAAGCCTTTATAGAAAAAAGAGTGAAATTGGAAGAGAAAATAACGAGAAGACGTGCGAAAAGTGACTAGAAAATACACTTTTTTCTTCTTCAGAGAGACGTAGAGATAGAATTCTGATGAACACTTGATTCTTTGGGTTTTCTCTGGGTGGCCTAATGGATTTTTGGCTATTTTAACGCTATTTTTGAACTAGATTTGATTGAAATTCTGTACTAATTACGAAATTACTGCTCAACTAGAGCTTGCCTTAATTCCAGTAGGTTTAGATTCAGATTTCATATAGTTCAGATTCATTTTTAAAGCATTCGCAAAGTTTCAGCTTTTTTCTCCTTCAAAATTCCGACCTGTCTACGTCACACTTGCCCTCCTACTCCTTATCAGATTCTCCTTGTCAGACTGCTCATATCTCACCTACCATACCCCTCTAGGGCTCTTCCAGCAACCACTAAGCTCCGCCTTCCTGGCGGCTACTGACTTCTAGGAGCCTTAGGAATTTTCATTTGATTTATTGCTGAGCATCATCATCATCATCTTCTTCTATTCTA</canonical>
            <polymorphic>AATTCGGCTGAATTTTGACCTATTTTAAGGCAAACTTTAAACTAGCTTTCGAGACTAGAATTTAGCTAAATTATGGCAAATTTTTGGGCTCATTTTCAGGGCTAAATTTAGCTAATCTTTAATCCTTTTTTAGGCTCTTTACCAGGTCTAAAATTCAGTTTCTGCCATTAGAGATGTTCTAATCTCAATATATCCTTGACCGTTTTTCTACCTTTTTTCCCTCTTTTTCTTGATCCTATCCTCATTCTTCTATTTTCTTTTCTTTCCTCCGCCCGTGTTTCTTCATGACGCAATTCGTATCTCTGCGTCTCTCTCCAGCAGTCCCTCTATCTCTTTATCTCTAACTTTTCACGCACAGCCCGTATGGTTGTTGGTTACAAATCACTCATATATGAACCATAACAATTGGATGTTTCTCTGTAGATTTAGATTCATTTTCTGATGACCTCTTTTGCCAAGCCTTTATAGAAAAAAGAGTGAAATTGGAAGAGAAAATAACRAGAAGACGTGCGAAAAGTGACTAGAAAATACACTTTTTTCTTCTTCAGAGAGACGTAGAGATAGAATTCTGATGAACACTTGATTCTTTGGGTTTTCTCTGGGTGGCCTAATGGATTTTTGGCTATTTTAACGCTATTTTTGAACTAGATTTGATTGAAATTCTGTACTAATTACGAAATTACTGCTCAACTAGAGCTTGCCTTAATTCCAGTAGGTTTAGATTCAGATTTCATATAGTTCAGATTCATTTTTAAAGCATTCGCAAAGTTTCAGCTTTTTTCTCCTTCAAAATTCCGACCTGTCTACGTCACACTTGCCCTCCTACTCCTTATCAGATTCTCCTTGTCAGACTGCTCATATCTCACCTACCATACCCCTCTAGGGCTCTTCCAGCAACCACTAAGCTCCGCCTTCCTGGCGGCTACTGACTTCTAGGAGCCTTAGGAATTTTCATTTGATTTATTGCTGAGCATCATCATCATCATCTTCTTCTATTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCATAACAATTGGATGTTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAAATAGCGTTAAAATAGC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACCATAACAATTGGATGTTTCTCTGTAGATTTAGATTCATTTTCTGATGACCTCTTTTGCCAAGCCTTTATAGAAAAAAGAGTGAAATTGGAAGAGAAAATAACGAGAAGACGTGCGAAAAGTGACTAGAAAATACACTTTTTTCTTCTTCAGAGAGACGTAGAGATAGAATTCTGATGAACACTTGATTCTTTGGGTTTTCTCTGGGTGGCCTAATGGATTTTTGGCTATTTTAACGCTATTTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>ACCATAACAATTGGATGTTTCTCTGTAGATTTAGATTCATTTTCTGATGACCTCTTTTGCCAAGCCTTTATAGAAAAAAGAGTGAAATTGGAAGAGAAAATAACRAGAAGACGTGCGAAAAGTGACTAGAAAATACACTTTTTTCTTCTTCAGAGAGACGTAGAGATAGAATTCTGATGAACACTTGATTCTTTGGGTTTTCTCTGGGTGGCCTAATGGATTTTTGGCTATTTTAACGCTATTTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5158</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>191451</contig_pos>
        <strand>+</strand>
        <context>TTCTGATGAC[C/G]TCTTTTGCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCATAACAATTGGATGTTTCTCTGTAGATTTAGATTCATTTTCTGATGAC</left_flank>
        <right_flank>TCTTTTGCCAAGCCTTTATAGAAAAAAGAGTGAAATTGGAAGAGAAAATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCACGAGTTTAGTTGAATTTTGACCCATTTTCTGGCTCATATACAGGGCTAAAATTCGGCTGAATTTTGACCTATTTTAAGGCAAACTTTAAACTAGCTTTCGAGACTAGAATTTAGCTAAATTATGGCAAATTTTTGGGCTCATTTTCAGGGCTAAATTTAGCTAATCTTTAATCCTTTTTTAGGCTCTTTACCAGGTCTAAAATTCAGTTTCTGCCATTAGAGATGTTCTAATCTCAATATATCCTTGACCGTTTTTCTACCTTTTTTCCCTCTTTTTCTTGATCCTATCCTCATTCTTCTATTTTCTTTTCTTTCCTCCGCCCGTGTTTCTTCATGACGCAATTCGTATCTCTGCGTCTCTCTCCAGCAGTCCCTCTATCTCTTTATCTCTAACTTTTCACGCACAGCCCGTATGGTTGTTGGTTACAAATCACTCATATATGAACCATAACAATTGGATGTTTCTCTGTAGATTTAGATTCATTTTCTGATGACCTCTTTTGCCAAGCCTTTATAGAAAAAAGAGTGAAATTGGAAGAGAAAATAACGAGAAGACGTGCGAAAAGTGACTAGAAAATACACTTTTTTCTTCTTCAGAGAGACGTAGAGATAGAATTCTGATGAACACTTGATTCTTTGGGTTTTCTCTGGGTGGCCTAATGGATTTTTGGCTATTTTAACGCTATTTTTGAACTAGATTTGATTGAAATTCTGTACTAATTACGAAATTACTGCTCAACTAGAGCTTGCCTTAATTCCAGTAGGTTTAGATTCAGATTTCATATAGTTCAGATTCATTTTTAAAGCATTCGCAAAGTTTCAGCTTTTTTCTCCTTCAAAATTCCGACCTGTCTACGTCACACTTGCCCTCCTACTCCTTATCAGATTCTCCTTGTCAGACTGCTCATATCTCACCTACCATACCCCTCTAGGGCTCTTCCAGCAACCACTAAGCTCCGCCTTCCTGGCGGCTACTGACTTCTAGGAGCCTTAGGA</canonical>
            <polymorphic>CCCACGAGTTTAGTTGAATTTTGACCCATTTTCTGGCTCATATACAGGGCTAAAATTCGGCTGAATTTTGACCTATTTTAAGGCAAACTTTAAACTAGCTTTCGAGACTAGAATTTAGCTAAATTATGGCAAATTTTTGGGCTCATTTTCAGGGCTAAATTTAGCTAATCTTTAATCCTTTTTTAGGCTCTTTACCAGGTCTAAAATTCAGTTTCTGCCATTAGAGATGTTCTAATCTCAATATATCCTTGACCGTTTTTCTACCTTTTTTCCCTCTTTTTCTTGATCCTATCCTCATTCTTCTATTTTCTTTTCTTTCCTCCGCCCGTGTTTCTTCATGACGCAATTCGTATCTCTGCGTCTCTCTCCAGCAGTCCCTCTATCTCTTTATCTCTAACTTTTCACGCACAGCCCGTATGGTTGTTGGTTACAAATCACTCATATATGAACCATAACAATTGGATGTTTCTCTGTAGATTTAGATTCATTTTCTGATGACSTCTTTTGCCAAGCCTTTATAGAAAAAAGAGTGAAATTGGAAGAGAAAATAACGAGAAGACGTGCGAAAAGTGACTAGAAAATACACTTTTTTCTTCTTCAGAGAGACGTAGAGATAGAATTCTGATGAACACTTGATTCTTTGGGTTTTCTCTGGGTGGCCTAATGGATTTTTGGCTATTTTAACGCTATTTTTGAACTAGATTTGATTGAAATTCTGTACTAATTACGAAATTACTGCTCAACTAGAGCTTGCCTTAATTCCAGTAGGTTTAGATTCAGATTTCATATAGTTCAGATTCATTTTTAAAGCATTCGCAAAGTTTCAGCTTTTTTCTCCTTCAAAATTCCGACCTGTCTACGTCACACTTGCCCTCCTACTCCTTATCAGATTCTCCTTGTCAGACTGCTCATATCTCACCTACCATACCCCTCTAGGGCTCTTCCAGCAACCACTAAGCTCCGCCTTCCTGGCGGCTACTGACTTCTAGGAGCCTTAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCATAACAATTGGATGTTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAAATAGCGTTAAAATAGC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACCATAACAATTGGATGTTTCTCTGTAGATTTAGATTCATTTTCTGATGACCTCTTTTGCCAAGCCTTTATAGAAAAAAGAGTGAAATTGGAAGAGAAAATAACGAGAAGACGTGCGAAAAGTGACTAGAAAATACACTTTTTTCTTCTTCAGAGAGACGTAGAGATAGAATTCTGATGAACACTTGATTCTTTGGGTTTTCTCTGGGTGGCCTAATGGATTTTTGGCTATTTTAACGCTATTTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>ACCATAACAATTGGATGTTTCTCTGTAGATTTAGATTCATTTTCTGATGACSTCTTTTGCCAAGCCTTTATAGAAAAAAGAGTGAAATTGGAAGAGAAAATAACGAGAAGACGTGCGAAAAGTGACTAGAAAATACACTTTTTTCTTCTTCAGAGAGACGTAGAGATAGAATTCTGATGAACACTTGATTCTTTGGGTTTTCTCTGGGTGGCCTAATGGATTTTTGGCTATTTTAACGCTATTTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5159</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>191274</contig_pos>
        <strand>+</strand>
        <context>ttctttcctc[A/C]GCCCGTGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCTCTTTTTCTTGATCCTATCCTCATTCTTCTATTTTCTTTTCTTTCCTC</left_flank>
        <right_flank>GCCCGTGTTTCTTCATGACGCAATTCGTATCTCTGCGTCTCTCTCCAGCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTTTTTTTTCTCAGAGAATTTATGGTCATTTTCAGATAGGTTGAACCCTAGATTCGGTCTCTTTTTAGCCATTTTCAGTCATTTTTAGAGACAAAGGAACCTAGAATTTTGCTTTCCAGGAGAAAACGTGACTTTTTGAAAGTTTTCTTCCTGGGGGAAACTCTAGCTCCGATTTCCCACGAGTTTAGTTGAATTTTGACCCATTTTCTGGCTCATATACAGGGCTAAAATTCGGCTGAATTTTGACCTATTTTAAGGCAAACTTTAAACTAGCTTTCGAGACTAGAATTTAGCTAAATTATGGCAAATTTTTGGGCTCATTTTCAGGGCTAAATTTAGCTAATCTTTAATCCTTTTTTAGGCTCTTTACCAGGTCTAAAATTCAGTTTCTGCCATTAGAGATGTTCTAATCTCAATATATCCTTGACCGTTTTTCTACCTTTTTTCCCTCTTTTTCTTGATCCTATCCTCATTCTTCTATTTTCTTTTCTTTCCTCCGCCCGTGTTTCTTCATGACGCAATTCGTATCTCTGCGTCTCTCTCCAGCAGTCCCTCTATCTCTTTATCTCTAACTTTTCACGCACAGCCCGTATGGTTGTTGGTTACAAATCACTCATATATGAACCATAACAATTGGATGTTTCTCTGTAGATTTAGATTCATTTTCTGATGACCTCTTTTGCCAAGCCTTTATAGAAAAAAGAGTGAAATTGGAAGAGAAAATAACGAGAAGACGTGCGAAAAGTGACTAGAAAATACACTTTTTTCTTCTTCAGAGAGACGTAGAGATAGAATTCTGATGAACACTTGATTCTTTGGGTTTTCTCTGGGTGGCCTAATGGATTTTTGGCTATTTTAACGCTATTTTTGAACTAGATTTGATTGAAATTCTGTACTAATTACGAAATTACTGCTCAACTAGAGCTTGCCTTAATTCCAGTAGGTTTAGATTCAGATTTCATATAGTTCAGATTCATTTTTAAAGCATTCGCAAAGTT</canonical>
            <polymorphic>ACCTTTTTTTTCTCAGAGAATTTATGGTCATTTTCAGATAGGTTGAACCCTAGATTCGGTCTCTTTTTAGCCATTTTCAGTCATTTTTAGAGACAAAGGAACCTAGAATTTTGCTTTCCAGGAGAAAACGTGACTTTTTGAAAGTTTTCTTCCTGGGGGAAACTCTAGCTCCGATTTCCCACGAGTTTAGTTGAATTTTGACCCATTTTCTGGCTCATATACAGGGCTAAAATTCGGCTGAATTTTGACCTATTTTAAGGCAAACTTTAAACTAGCTTTCGAGACTAGAATTTAGCTAAATTATGGCAAATTTTTGGGCTCATTTTCAGGGCTAAATTTAGCTAATCTTTAATCCTTTTTTAGGCTCTTTACCAGGTCTAAAATTCAGTTTCTGCCATTAGAGATGTTCTAATCTCAATATATCCTTGACCGTTTTTCTACCTTTTTTCCCTCTTTTTCTTGATCCTATCCTCATTCTTCTATTTTCTTTTCTTTCCTCMGCCCGTGTTTCTTCATGACGCAATTCGTATCTCTGCGTCTCTCTCCAGCAGTCCCTCTATCTCTTTATCTCTAACTTTTCACGCACAGCCCGTATGGTTGTTGGTTACAAATCACTCATATATGAACCATAACAATTGGATGTTTCTCTGTAGATTTAGATTCATTTTCTGATGACCTCTTTTGCCAAGCCTTTATAGAAAAAAGAGTGAAATTGGAAGAGAAAATAACGAGAAGACGTGCGAAAAGTGACTAGAAAATACACTTTTTTCTTCTTCAGAGAGACGTAGAGATAGAATTCTGATGAACACTTGATTCTTTGGGTTTTCTCTGGGTGGCCTAATGGATTTTTGGCTATTTTAACGCTATTTTTGAACTAGATTTGATTGAAATTCTGTACTAATTACGAAATTACTGCTCAACTAGAGCTTGCCTTAATTCCAGTAGGTTTAGATTCAGATTTCATATAGTTCAGATTCATTTTTAAAGCATTCGCAAAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAGGTCTAAAATTCAGTTTCT</pcr_primer_p1>
		<pcr_primer_p2>TATGAGTGATTTGTAACCAACAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCAGGTCTAAAATTCAGTTTCTGCCATTAGAGATGTTCTAATCTCAATATATCCTTGACCGTTTTTCTACCTTTTTTCCCTCTTTTTCTTGATCCTATCCTCATTCTTCTATTTTCTTTTCTTTCCTCCGCCCGTGTTTCTTCATGACGCAATTCGTATCTCTGCGTCTCTCTCCAGCAGTCCCTCTATCTCTTTATCTCTAACTTTTCACGCACAGCCCGTATGGTTGTTGGTTACAAATCACTCATA</canonical_amplicon>
		<polymorphic_amplicon>ACCAGGTCTAAAATTCAGTTTCTGCCATTAGAGATGTTCTAATCTCAATATATCCTTGACCGTTTTTCTACCTTTTTTCCCTCTTTTTCTTGATCCTATCCTCATTCTTCTATTTTCTTTTCTTTCCTCMGCCCGTGTTTCTTCATGACGCAATTCGTATCTCTGCGTCTCTCTCCAGCAGTCCCTCTATCTCTTTATCTCTAACTTTTCACGCACAGCCCGTATGGTTGTTGGTTACAAATCACTCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5160</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>191168</contig_pos>
        <strand>+</strand>
        <context>TTCAGTTTCT[A/G]CCATTAGAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCTTTAATCCTTTTTTAGGCTCTTTACCAGGTCTAAAATTCAGTTTCT</left_flank>
        <right_flank>CCATTAGAGATGTTCTAATCTCAATATATCCTTGACCGTTTTTCTACCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGCTGCTCCAAAAGAATTTTCAATTAAGAAAAATTGCCAATTTAGACTAGATAGACACTTCTAATTTCTCAATAGTGACGGATTAGTGGAATTTGTAAGACGAGTACCTTTTTTTTCTCAGAGAATTTATGGTCATTTTCAGATAGGTTGAACCCTAGATTCGGTCTCTTTTTAGCCATTTTCAGTCATTTTTAGAGACAAAGGAACCTAGAATTTTGCTTTCCAGGAGAAAACGTGACTTTTTGAAAGTTTTCTTCCTGGGGGAAACTCTAGCTCCGATTTCCCACGAGTTTAGTTGAATTTTGACCCATTTTCTGGCTCATATACAGGGCTAAAATTCGGCTGAATTTTGACCTATTTTAAGGCAAACTTTAAACTAGCTTTCGAGACTAGAATTTAGCTAAATTATGGCAAATTTTTGGGCTCATTTTCAGGGCTAAATTTAGCTAATCTTTAATCCTTTTTTAGGCTCTTTACCAGGTCTAAAATTCAGTTTCTGCCATTAGAGATGTTCTAATCTCAATATATCCTTGACCGTTTTTCTACCTTTTTTCCCTCTTTTTCTTGATCCTATCCTCATTCTTCTATTTTCTTTTCTTTCCTCCGCCCGTGTTTCTTCATGACGCAATTCGTATCTCTGCGTCTCTCTCCAGCAGTCCCTCTATCTCTTTATCTCTAACTTTTCACGCACAGCCCGTATGGTTGTTGGTTACAAATCACTCATATATGAACCATAACAATTGGATGTTTCTCTGTAGATTTAGATTCATTTTCTGATGACCTCTTTTGCCAAGCCTTTATAGAAAAAAGAGTGAAATTGGAAGAGAAAATAACGAGAAGACGTGCGAAAAGTGACTAGAAAATACACTTTTTTCTTCTTCAGAGAGACGTAGAGATAGAATTCTGATGAACACTTGATTCTTTGGGTTTTCTCTGGGTGGCCTAATGGATTTTTGGCTATTTTAACGCTATTTTTGAACTAGATTTGATTGAAATTCT</canonical>
            <polymorphic>TAGCTGCTCCAAAAGAATTTTCAATTAAGAAAAATTGCCAATTTAGACTAGATAGACACTTCTAATTTCTCAATAGTGACGGATTAGTGGAATTTGTAAGACGAGTACCTTTTTTTTCTCAGAGAATTTATGGTCATTTTCAGATAGGTTGAACCCTAGATTCGGTCTCTTTTTAGCCATTTTCAGTCATTTTTAGAGACAAAGGAACCTAGAATTTTGCTTTCCAGGAGAAAACGTGACTTTTTGAAAGTTTTCTTCCTGGGGGAAACTCTAGCTCCGATTTCCCACGAGTTTAGTTGAATTTTGACCCATTTTCTGGCTCATATACAGGGCTAAAATTCGGCTGAATTTTGACCTATTTTAAGGCAAACTTTAAACTAGCTTTCGAGACTAGAATTTAGCTAAATTATGGCAAATTTTTGGGCTCATTTTCAGGGCTAAATTTAGCTAATCTTTAATCCTTTTTTAGGCTCTTTACCAGGTCTAAAATTCAGTTTCTRCCATTAGAGATGTTCTAATCTCAATATATCCTTGACCGTTTTTCTACCTTTTTTCCCTCTTTTTCTTGATCCTATCCTCATTCTTCTATTTTCTTTTCTTTCCTCCGCCCGTGTTTCTTCATGACGCAATTCGTATCTCTGCGTCTCTCTCCAGCAGTCCCTCTATCTCTTTATCTCTAACTTTTCACGCACAGCCCGTATGGTTGTTGGTTACAAATCACTCATATATGAACCATAACAATTGGATGTTTCTCTGTAGATTTAGATTCATTTTCTGATGACCTCTTTTGCCAAGCCTTTATAGAAAAAAGAGTGAAATTGGAAGAGAAAATAACGAGAAGACGTGCGAAAAGTGACTAGAAAATACACTTTTTTCTTCTTCAGAGAGACGTAGAGATAGAATTCTGATGAACACTTGATTCTTTGGGTTTTCTCTGGGTGGCCTAATGGATTTTTGGCTATTTTAACGCTATTTTTGAACTAGATTTGATTGAAATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAGNNNCTG</site>
                <isoschizomers>
                    <enzyme>AlwNI</enzyme>
                    <enzyme>CaiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTCATTTTCAGGGCTAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGATAAAGAGATAGAGGGACTGC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GCTCATTTTCAGGGCTAAATTTAGCTAATCTTTAATCCTTTTTTAGGCTCTTTACCAGGTCTAAAATTCAGTTTCTGCCATTAGAGATGTTCTAATCTCAATATATCCTTGACCGTTTTTCTACCTTTTTTCCCTCTTTTTCTTGATCCTATCCTCATTCTTCTATTTTCTTTTCTTTCCTCCGCCCGTGTTTCTTCATGACGCAATTCGTATCTCTGCGTCTCTCTCCAGCAGTCCCTCTATCTCTTTATCT</canonical_amplicon>
		<polymorphic_amplicon>GCTCATTTTCAGGGCTAAATTTAGCTAATCTTTAATCCTTTTTTAGGCTCTTTACCAGGTCTAAAATTCAGTTTCTRCCATTAGAGATGTTCTAATCTCAATATATCCTTGACCGTTTTTCTACCTTTTTTCCCTCTTTTTCTTGATCCTATCCTCATTCTTCTATTTTCTTTTCTTTCCTCCGCCCGTGTTTCTTCATGACGCAATTCGTATCTCTGCGTCTCTCTCCAGCAGTCCCTCTATCTCTTTATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5165</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>405364</contig_pos>
        <strand>+</strand>
        <context>TTTACTTTGA[A/G]AACTTTCTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATCCCTAGATCTCAATTTTTCCATAAATTTTCCTAAAATTTTACTTTGA</left_flank>
        <right_flank>AACTTTCTAATTAAGTAGTCCAATTAAGTTTCCTCCTAGTTTTCCAATTT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTAACCGAGATATTTTAGCTCAAAATTAGGAGTCTCGCAGGGGTTACGGTAGCAGATGCCCAATTTTTTAAAACGCCATATTTTGGCTCAGAATTGAGCTAGAAAAGTGAAATTTAGTGCAAAATGTTCAGAAATTCAAGAAAAACAAATTGTTCTAATATTTAAATTCTTTTTTTTTTGCCTCTTTTCTAGTTTGCTGGGACATAACTTGCCCAAACGTCTTATCTTTTTTCAATGGATTTCCCTCCAGGCAATCAACTTTGAGCCCATATATCTCGATCCCTGTAAAAGGTATCAAAACGTTGTCAACAAAGAAAATGTTTATCATGATATCAGCAATATTTTAACAGTTTATTACTTTTTGATATCTCTCACAGAAAATGAGATACATAGGCTCAAAGTTAAAGGTCCTGGTGGCCTTCTATGAGAGGGTTAACGGCAATTTCAGATCCCTAGATCTCAATTTTTCCATAAATTTTCCTAAAATTTTACTTTGAGAACTTTCTAATTAAGTAGTCCAATTAAGTTTCCTCCTAGTTTTCCAATTTCGAAATTTACATAATTGCTAATTTAATTGCTAATAATTGGTAATTTCAGATACCTAGTTTTCTTTTTTTGAGTATTTTCAAAACTTTTAGATTCTAATTTTCGAAAATTTCCAATTAAGTTTCCAAATTCTTCTCCTAATCTTCCAATTTCGAAATTTACATAATTGCTAATTTATGATCATTTTTCACCCCCGTTGATGCAACATGTCCCCTTCGGAAACATACAAATTAATTGGTTGAGGATTTATAGCGGATTACTGTCATCGAAGTAGGGAATTAAAATTTCGAGGATCCTAATTATTGTAATAATCTAAAATTTCTGAAAATCCGAAAAAATACAAAAATCCGAAATTCAAAATCCCTAAAAATCTGGAACACCTAACACTTTGAAAATCCAAAAAAAAAATCCAAAATACCCATGGTTCTGAAAATTCTGAAATCCTGAAAATC</canonical>
            <polymorphic>CAGTAACCGAGATATTTTAGCTCAAAATTAGGAGTCTCGCAGGGGTTACGGTAGCAGATGCCCAATTTTTTAAAACGCCATATTTTGGCTCAGAATTGAGCTAGAAAAGTGAAATTTAGTGCAAAATGTTCAGAAATTCAAGAAAAACAAATTGTTCTAATATTTAAATTCTTTTTTTTTTGCCTCTTTTCTAGTTTGCTGGGACATAACTTGCCCAAACGTCTTATCTTTTTTCAATGGATTTCCCTCCAGGCAATCAACTTTGAGCCCATATATCTCGATCCCTGTAAAAGGTATCAAAACGTTGTCAACAAAGAAAATGTTTATCATGATATCAGCAATATTTTAACAGTTTATTACTTTTTGATATCTCTCACAGAAAATGAGATACATAGGCTCAAAGTTAAAGGTCCTGGTGGCCTTCTATGAGAGGGTTAACGGCAATTTCAGATCCCTAGATCTCAATTTTTCCATAAATTTTCCTAAAATTTTACTTTGARAACTTTCTAATTAAGTAGTCCAATTAAGTTTCCTCCTAGTTTTCCAATTTCGAAATTTACATAATTGCTAATTTAATTGCTAATAATTGGTAATTTCAGATACCTAGTTTTCTTTTTTTGAGTATTTTCAAAACTTTTAGATTCTAATTTTCGAAAATTTCCAATTAAGTTTCCAAATTCTTCTCCTAATCTTCCAATTTCGAAATTTACATAATTGCTAATTTATGATCATTTTTCACCCCCGTTGATGCAACATGTCCCCTTCGGAAACATACAAATTAATTGGTTGAGGATTTATAGCGGATTACTGTCATCGAAGTAGGGAATTAAAATTTCGAGGATCCTAATTATTGTAATAATCTAAAATTTCTGAAAATCCGAAAAAATACAAAAATCCGAAATTCAAAATCCCTAAAAATCTGGAACACCTAACACTTTGAAAATCCAAAAAAAAAATCCAAAATACCCATGGTTCTGAAAATTCTGAAATCCTGAAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGATCCCTAGATCTCAATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGGAAGATTAGGAGAAGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCAGATCCCTAGATCTCAATTTTTCCATAAATTTTCCTAAAATTTTACTTTGAGAACTTTCTAATTAAGTAGTCCAATTAAGTTTCCTCCTAGTTTTCCAATTTCGAAATTTACATAATTGCTAATTTAATTGCTAATAATTGGTAATTTCAGATACCTAGTTTTCTTTTTTTGAGTATTTTCAAAACTTTTAGATTCTAATTTTCGAAAATTTCCAATTAAGTTTCCAAATTCTTCTCCTAATCTTCCAA</canonical_amplicon>
		<polymorphic_amplicon>TCAGATCCCTAGATCTCAATTTTTCCATAAATTTTCCTAAAATTTTACTTTGARAACTTTCTAATTAAGTAGTCCAATTAAGTTTCCTCCTAGTTTTCCAATTTCGAAATTTACATAATTGCTAATTTAATTGCTAATAATTGGTAATTTCAGATACCTAGTTTTCTTTTTTTGAGTATTTTCAAAACTTTTAGATTCTAATTTTCGAAAATTTCCAATTAAGTTTCCAAATTCTTCTCCTAATCTTCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5166</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>24891</contig_pos>
        <strand>+</strand>
        <context>AGCCCTTCAC[A/C]GCGAACGGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTATTTCTCGCTTAAAGTTGAGTTTTTGTGTTCGTCTACCAGCCCTTCAC</left_flank>
        <right_flank>GCGAACGGCTGCACTTTCGTTGCATTACGCTCTGGCGGACTAGTTTTTTT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAACTTTAATATAGGAATGAAACTATTAAAATGAAAAAAACAACTTCAACAAGAGAAAGCGCAGTAGAAATCGTCAGAATTCAAACAAAAACGAAAGATTTGTCAAGAAAACAATAAATTAAAGGCGCACAGCTTATAAAAAACAAAGTGTCTTACCACGAAAATGAAAGAAACATCACAGCCGACAGAAAAAGTGTCCCGCAACGATTAGAGGATTACTGTACCATTCAAATGTTTTAATCGACTTTTCGCTGTTCGTTTCGCCAGCTGCTCAAGGGAGTTTGTTTTCCGGCCGTTCTGGAATAAGTACAGGCTCAAATCCGTCGAGCCATCGCCCGGCAAAGACGACGAACTCATTTGATTTGCATGCTCTCAAAGAAATGTAGGTTTTTGTTCGGGAAAAAGTGATGAATGTCTTTCTTGCTCATTATAAAGAAGAAAACATTCGTATTTCTCGCTTAAAGTTGAGTTTTTGTGTTCGTCTACCAGCCCTTCACAGCGAACGGCTGCACTTTCGTTGCATTACGCTCTGGCGGACTAGTTTTTTTCCGCACGGCCTAACAAACGCCCGCACTGTCGAGTATTAGCGCGTAGTTCGAATCAAAACTGTTTTCTCTGCTCTTTTCTATAAAACTATTTTATTTTCAGAATGTCAGCACCGAAAAAACGAAAAAGTGATATTCATGTAAGTTTGTCGTCGAAAATTTCACCAAGGAACTAAAATTTTGCAGATCGACCTCTGCGCAAGAGATGAAGCGGATCACAAGTCGAAGAAAGAGAAGACCAATTGGCATCATGAGGTTCTAAATTAATCATCACCTCGTTTACTTAAAATCGCTTTTTCAGGAACAAGTCGAGAATCGACGAGGCTCGTTTCTCAAAGGAATCATCAACAAAGTGAAAAGCACAGCGTCTTTGAAGACTTTGAACAGAGGACCATCAACATCGAAGCTCGAAACGATAGCTAATGACACGCAGTTATCAATCAAGAGCGAGTC</canonical>
            <polymorphic>CAAAACTTTAATATAGGAATGAAACTATTAAAATGAAAAAAACAACTTCAACAAGAGAAAGCGCAGTAGAAATCGTCAGAATTCAAACAAAAACGAAAGATTTGTCAAGAAAACAATAAATTAAAGGCGCACAGCTTATAAAAAACAAAGTGTCTTACCACGAAAATGAAAGAAACATCACAGCCGACAGAAAAAGTGTCCCGCAACGATTAGAGGATTACTGTACCATTCAAATGTTTTAATCGACTTTTCGCTGTTCGTTTCGCCAGCTGCTCAAGGGAGTTTGTTTTCCGGCCGTTCTGGAATAAGTACAGGCTCAAATCCGTCGAGCCATCGCCCGGCAAAGACGACGAACTCATTTGATTTGCATGCTCTCAAAGAAATGTAGGTTTTTGTTCGGGAAAAAGTGATGAATGTCTTTCTTGCTCATTATAAAGAAGAAAACATTCGTATTTCTCGCTTAAAGTTGAGTTTTTGTGTTCGTCTACCAGCCCTTCACMGCGAACGGCTGCACTTTCGTTGCATTACGCTCTGGCGGACTAGTTTTTTTCCGCACGGCCTAACAAACGCCCGCACTGTCGAGTATTAGCGCGTAGTTCGAATCAAAACTGTTTTCTCTGCTCTTTTCTATAAAACTATTTTATTTTCAGAATGTCAGCACCGAAAAAACGAAAAAGTGATATTCATGTAAGTTTGTCGTCGAAAATTTCACCAAGGAACTAAAATTTTGCAGATCGACCTCTGCGCAAGAGATGAAGCGGATCACAAGTCGAAGAAAGAGAAGACCAATTGGCATCATGAGGTTCTAAATTAATCATCACCTCGTTTACTTAAAATCGCTTTTTCAGGAACAAGTCGAGAATCGACGAGGCTCGTTTCTCAAAGGAATCATCAACAAAGTGAAAAGCACAGCGTCTTTGAAGACTTTGAACAGAGGACCATCAACATCGAAGCTCGAAACGATAGCTAATGACACGCAGTTATCAATCAAGAGCGAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATGTCTTTCTTGCTCATTAT</pcr_primer_p1>
		<pcr_primer_p2>TGCTGACATTCTGAAAATAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAATGTCTTTCTTGCTCATTATAAAGAAGAAAACATTCGTATTTCTCGCTTAAAGTTGAGTTTTTGTGTTCGTCTACCAGCCCTTCACAGCGAACGGCTGCACTTTCGTTGCATTACGCTCTGGCGGACTAGTTTTTTTCCGCACGGCCTAACAAACGCCCGCACTGTCGAGTATTAGCGCGTAGTTCGAATCAAAACTGTTTTCTCTGCTCTTTTCTATAAAACTATTTTATTTTCAGAATGTCAGCA</canonical_amplicon>
		<polymorphic_amplicon>TGAATGTCTTTCTTGCTCATTATAAAGAAGAAAACATTCGTATTTCTCGCTTAAAGTTGAGTTTTTGTGTTCGTCTACCAGCCCTTCACMGCGAACGGCTGCACTTTCGTTGCATTACGCTCTGGCGGACTAGTTTTTTTCCGCACGGCCTAACAAACGCCCGCACTGTCGAGTATTAGCGCGTAGTTCGAATCAAAACTGTTTTCTCTGCTCTTTTCTATAAAACTATTTTATTTTCAGAATGTCAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5167</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>26516</contig_pos>
        <strand>+</strand>
        <context>CAAAAATACG[C/T]AAGAAGGCAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAATGACGAGCGTAGCGTCGACTGAATCACAACAGAAACCAAAAATACG</left_flank>
        <right_flank>AAGAAGGCACCATCCACTTCAAATCTCACTCAACGTCTCTCGTCGGTGTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAATTCAAACTTATATAAATTGTGGAATGAATTTAGATAAGAATGAGTGCACCGATCGCAGAAGAAGAAGAAAGTGGTGAGCAATTCGGAGCAGCAAAAGAGTTTTTCGACGGGAACATAACATCCCATGACGAATCAGCAGATGAAGGGAGTGCTTCAATATCTCGTCTTTCAACAGCTTCAGTAACGTCTTGCAGCGGACATAGTATTGTAAGTTGTTCAGCTGATAGAAGCAAGCAACCATTCATTTCTTTTTAGGGTCGCAAGAGCTCAATTTTCCGAAAAATCTTCAACCCAAAGGATAGGGAACGAAGATTGAGTGACGTCTTCCACGGTCCAACATCTTCTACTTCCAACGAACGCCGTGCATCGATTATCTCCTTCACAAACGACTGCTCTTTTGCCGCCGGAGGTATGACGTCAGCTTCGGCTTCTGCCACGAACGTATCAATGACGAGCGTAGCGTCGACTGAATCACAACAGAAACCAAAAATACGCAAGAAGGCACCATCCACTTCAAATCTCACTCAACGTCTCTCGTCGGTGTTCCGAAGAAGTTCCACTTCTGCGAATAAGGACGATGACATGATTGGTCCGCACAGCCAATCCCGTCGCAGTACTTTGACTGGATATTCCTCGATTTCTTCCGGAATTGGTAGCATAGCCAGCGGTGTTTCAGATCAAGGGTACGGTACTATCGGATCTCGAAATGGGCAGAGTATATCGAGGTCTGGGTCGAAGAGAGATGATCAAAACAAGCGTGGTTTGTTGACTGAAACAAAATTCCATTCATTCAATTATTTCGTTCAGAACGTTCTCGTCGTCTACTTGATCGCATCATCATCTCCGAGATTCCAGCAGAAGATCTTTTGAGGATGAAGGTCGAGCAGATGAAGAGAAAAGAAGAGGAAGCCGACACTTCAACCTGCATTTCTGAAAACGAGCTTCTGAATTTTGACGTTGTGGCTGTTGATGTCAAAGCCGACGGCTCTCCATGT</canonical>
            <polymorphic>TCTAATTCAAACTTATATAAATTGTGGAATGAATTTAGATAAGAATGAGTGCACCGATCGCAGAAGAAGAAGAAAGTGGTGAGCAATTCGGAGCAGCAAAAGAGTTTTTCGACGGGAACATAACATCCCATGACGAATCAGCAGATGAAGGGAGTGCTTCAATATCTCGTCTTTCAACAGCTTCAGTAACGTCTTGCAGCGGACATAGTATTGTAAGTTGTTCAGCTGATAGAAGCAAGCAACCATTCATTTCTTTTTAGGGTCGCAAGAGCTCAATTTTCCGAAAAATCTTCAACCCAAAGGATAGGGAACGAAGATTGAGTGACGTCTTCCACGGTCCAACATCTTCTACTTCCAACGAACGCCGTGCATCGATTATCTCCTTCACAAACGACTGCTCTTTTGCCGCCGGAGGTATGACGTCAGCTTCGGCTTCTGCCACGAACGTATCAATGACGAGCGTAGCGTCGACTGAATCACAACAGAAACCAAAAATACGYAAGAAGGCACCATCCACTTCAAATCTCACTCAACGTCTCTCGTCGGTGTTCCGAAGAAGTTCCACTTCTGCGAATAAGGACGATGACATGATTGGTCCGCACAGCCAATCCCGTCGCAGTACTTTGACTGGATATTCCTCGATTTCTTCCGGAATTGGTAGCATAGCCAGCGGTGTTTCAGATCAAGGGTACGGTACTATCGGATCTCGAAATGGGCAGAGTATATCGAGGTCTGGGTCGAAGAGAGATGATCAAAACAAGCGTGGTTTGTTGACTGAAACAAAATTCCATTCATTCAATTATTTCGTTCAGAACGTTCTCGTCGTCTACTTGATCGCATCATCATCTCCGAGATTCCAGCAGAAGATCTTTTGAGGATGAAGGTCGAGCAGATGAAGAGAAAAGAAGAGGAAGCCGACACTTCAACCTGCATTTCTGAAAACGAGCTTCTGAATTTTGACGTTGTGGCTGTTGATGTCAAAGCCGACGGCTCTCCATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATCAATGACGAGCGTAGC</pcr_primer_p1>
		<pcr_primer_p2>TACCGTACCCTTGATCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTATCAATGACGAGCGTAGCGTCGACTGAATCACAACAGAAACCAAAAATACGCAAGAAGGCACCATCCACTTCAAATCTCACTCAACGTCTCTCGTCGGTGTTCCGAAGAAGTTCCACTTCTGCGAATAAGGACGATGACATGATTGGTCCGCACAGCCAATCCCGTCGCAGTACTTTGACTGGATATTCCTCGATTTCTTCCGGAATTGGTAGCATAGCCAGCGGTGTTTCAGATCAAGGGTACGGTA</canonical_amplicon>
		<polymorphic_amplicon>GTATCAATGACGAGCGTAGCGTCGACTGAATCACAACAGAAACCAAAAATACGYAAGAAGGCACCATCCACTTCAAATCTCACTCAACGTCTCTCGTCGGTGTTCCGAAGAAGTTCCACTTCTGCGAATAAGGACGATGACATGATTGGTCCGCACAGCCAATCCCGTCGCAGTACTTTGACTGGATATTCCTCGATTTCTTCCGGAATTGGTAGCATAGCCAGCGGTGTTTCAGATCAAGGGTACGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5168</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>28432</contig_pos>
        <strand>+</strand>
        <context>TGTGAGATGA[A/C]ATTGATGAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAAAATTATGATGATTGATATAGAGGGGAAAAGTACAAAGTGTGAGATGA</left_flank>
        <right_flank>ATTGATGAGAAAAAAGTAGAGAGATATTGAGAGAAAAATGTAATCGGATC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTTATATCTGAAACAAGACGATGAATTCTGTGAATAAAATGTCCCATCCCTATTCCTTCCATTCCGAGCAATCATCATCATTTTGTTGTAATAAATCGTATGTGCAGGATAAATTTGTGTTGTAATGTTTTGTTTTCTAAAACATTTGCCCTTTTCCCTCCCTAATGTTTTCCCTTCAAGTTCCCGAAAATTCACATCCGGTTGCTCATCATCTCCACAGATGATGATCAATCGATCATAACTCTGCGTCTTCACGGATCTCCTGTTTTCTCCTCTTATCTTTTACTATGCTTTGTCGTAATGAAAGAAACATTGGAAATTGCGAGAGAGAGGCAAAGAGAGCACTCTTTCGGGAAACAAAAATCCACTCCATCTTCTTCATTATTTTGTTTATCCACCTGTTTTCGCTCAACAAATTCCGCTAAAGTGCCACGTGTACAACATAGTAAAATTATGATGATTGATATAGAGGGGAAAAGTACAAAGTGTGAGATGACATTGATGAGAAAAAAGTAGAGAGATATTGAGAGAAAAATGTAATCGGATCGCTTTTTCTTCTCACTTATCTTTTCAATTGGTTCACTTTGTCACTCAAGAAATAGACAATAGGCATATTTTTTTTTATTCTGGGTTTCTTATTATTTTGGTACGAAAAAATCCGAGTTGTGGCTGCGGCCTAAGCTCTGGTAACCGGTTTCCAACCAGATTCGGGAAAATTCCGGAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGGAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCAGACCTGGTCAGAAAATCGCCAGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGGTTGTAAAATGCGCGTTCCCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGAGAGGTCCCACAACGAAAACTACCGTATCCTAAAAATAATTATATTTTCCGGATTGGTTATTAT</canonical>
            <polymorphic>TTCTTTATATCTGAAACAAGACGATGAATTCTGTGAATAAAATGTCCCATCCCTATTCCTTCCATTCCGAGCAATCATCATCATTTTGTTGTAATAAATCGTATGTGCAGGATAAATTTGTGTTGTAATGTTTTGTTTTCTAAAACATTTGCCCTTTTCCCTCCCTAATGTTTTCCCTTCAAGTTCCCGAAAATTCACATCCGGTTGCTCATCATCTCCACAGATGATGATCAATCGATCATAACTCTGCGTCTTCACGGATCTCCTGTTTTCTCCTCTTATCTTTTACTATGCTTTGTCGTAATGAAAGAAACATTGGAAATTGCGAGAGAGAGGCAAAGAGAGCACTCTTTCGGGAAACAAAAATCCACTCCATCTTCTTCATTATTTTGTTTATCCACCTGTTTTCGCTCAACAAATTCCGCTAAAGTGCCACGTGTACAACATAGTAAAATTATGATGATTGATATAGAGGGGAAAAGTACAAAGTGTGAGATGAMATTGATGAGAAAAAAGTAGAGAGATATTGAGAGAAAAATGTAATCGGATCGCTTTTTCTTCTCACTTATCTTTTCAATTGGTTCACTTTGTCACTCAAGAAATAGACAATAGGCATATTTTTTTTTATTCTGGGTTTCTTATTATTTTGGTACGAAAAAATCCGAGTTGTGGCTGCGGCCTAAGCTCTGGTAACCGGTTTCCAACCAGATTCGGGAAAATTCCGGAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGGAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCAGACCTGGTCAGAAAATCGCCAGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGGTTGTAAAATGCGCGTTCCCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGAGAGGTCCCACAACGAAAACTACCGTATCCTAAAAATAATTATATTTTCCGGATTGGTTATTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCACTCCATCTTCTTCATTAT</pcr_primer_p1>
		<pcr_primer_p2>TGCCTATTGTCTATTTCTTGAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCCACTCCATCTTCTTCATTATTTTGTTTATCCACCTGTTTTCGCTCAACAAATTCCGCTAAAGTGCCACGTGTACAACATAGTAAAATTATGATGATTGATATAGAGGGGAAAAGTACAAAGTGTGAGATGACATTGATGAGAAAAAAGTAGAGAGATATTGAGAGAAAAATGTAATCGGATCGCTTTTTCTTCTCACTTATCTTTTCAATTGGTTCACTTTGTCACTCAAGAAATAGACAATAGGCA</canonical_amplicon>
		<polymorphic_amplicon>ATCCACTCCATCTTCTTCATTATTTTGTTTATCCACCTGTTTTCGCTCAACAAATTCCGCTAAAGTGCCACGTGTACAACATAGTAAAATTATGATGATTGATATAGAGGGGAAAAGTACAAAGTGTGAGATGAMATTGATGAGAAAAAAGTAGAGAGATATTGAGAGAAAAATGTAATCGGATCGCTTTTTCTTCTCACTTATCTTTTCAATTGGTTCACTTTGTCACTCAAGAAATAGACAATAGGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5191</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>82100</contig_pos>
        <strand>+</strand>
        <context>TGCTGATGAA[A/G]ACGAAGAACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGATATGGACGACAATGTTGAAGACGACGATCGCAGCGATGCTGATGAA</left_flank>
        <right_flank>ACGAAGAACCGGATCGAATGGAGGAGGATGAGGCGGAAGAGATTCCACAG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGGCTGTGTAGCTAATAATCCAACTCCGCCCACTTTCCCAGGTTTTTTTTCCCCGATTTTCTCCCCGGAATTGCGGGGTCTCCTGTCTTTGAATCGATTGAGTAACGGCGCTCCACTGTTCACATCGAAGAGCGATTTTCGAAAACGAGTATCGAACCCTGAAAATGCGACTGTACATTGATTTCTAGAGTAGCTCTCATTCTAAAACTTTCTACTAGAAATTTTAGTTGTGAATAAACTGTTTGTTTTCCTCAGATATTTCTCTCTCATTGACTATATCGCCTCTTTAGGACAGAAGTCCTATATTTCGTTCCTAAACACGATTCTTCAATCTTCATGATCTGTAAATTGTGATTTTAGACCGAAGATCCTCAAACGATGGATTCTGATCTTTACGACGAGTTCGGTAACTACATCGGTCCCGAGTTGGACTCGGACGACGATGTAGGGGATATGGACGACAATGTTGAAGACGACGATCGCAGCGATGCTGATGAAAACGAAGAACCGGATCGAATGGAGGAGGATGAGGCGGAAGAGATTCCACAGAACCAAGTGGTGCTCCACGAAGACAAGAAGTACTACGCTTCGGCGCTGGAAGTGTACGGAGAAAATGTCGAGACGTTGGTGCAGGAAGAGGATGCCCAACCTCTGACTGAACCGATTGTCAAGCCAGTCTCAAAAAAGAAGTTCCAAGCTGCGGAACACAGACTCCCAGAGACCGTCTACAAAAAGGAGTATCTCGCAGACTTGATGGATTGCCCTCATATCATGAGAAACGTCGCCATTGCTGGCCATTTGCATCACGGAAAGACGACGTTCTTGGATTGCCTAATGGAGCAGACACATCCAGAATTCTACAGAGCCGAAGACGCAGACACTCGTTTCACCGACACTCTTTTCATCGAACAGCAAAGAGGATGCTCGATCAAGTCGCAACCGGTAAGCATTGTAGCTCAGGATAGTCGCAGCAAAAGCTATTTGCTAAACGTTATTGAC</canonical>
            <polymorphic>GCGGCTGTGTAGCTAATAATCCAACTCCGCCCACTTTCCCAGGTTTTTTTTCCCCGATTTTCTCCCCGGAATTGCGGGGTCTCCTGTCTTTGAATCGATTGAGTAACGGCGCTCCACTGTTCACATCGAAGAGCGATTTTCGAAAACGAGTATCGAACCCTGAAAATGCGACTGTACATTGATTTCTAGAGTAGCTCTCATTCTAAAACTTTCTACTAGAAATTTTAGTTGTGAATAAACTGTTTGTTTTCCTCAGATATTTCTCTCTCATTGACTATATCGCCTCTTTAGGACAGAAGTCCTATATTTCGTTCCTAAACACGATTCTTCAATCTTCATGATCTGTAAATTGTGATTTTAGACCGAAGATCCTCAAACGATGGATTCTGATCTTTACGACGAGTTCGGTAACTACATCGGTCCCGAGTTGGACTCGGACGACGATGTAGGGGATATGGACGACAATGTTGAAGACGACGATCGCAGCGATGCTGATGAARACGAAGAACCGGATCGAATGGAGGAGGATGAGGCGGAAGAGATTCCACAGAACCAAGTGGTGCTCCACGAAGACAAGAAGTACTACGCTTCGGCGCTGGAAGTGTACGGAGAAAATGTCGAGACGTTGGTGCAGGAAGAGGATGCCCAACCTCTGACTGAACCGATTGTCAAGCCAGTCTCAAAAAAGAAGTTCCAAGCTGCGGAACACAGACTCCCAGAGACCGTCTACAAAAAGGAGTATCTCGCAGACTTGATGGATTGCCCTCATATCATGAGAAACGTCGCCATTGCTGGCCATTTGCATCACGGAAAGACGACGTTCTTGGATTGCCTAATGGAGCAGACACATCCAGAATTCTACAGAGCCGAAGACGCAGACACTCGTTTCACCGACACTCTTTTCATCGAACAGCAAAGAGGATGCTCGATCAAGTCGCAACCGGTAAGCATTGTAGCTCAGGATAGTCGCAGCAAAAGCTATTTGCTAAACGTTATTGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATGATCTGTAAATTGTGATTTT</pcr_primer_p1>
		<pcr_primer_p2>GTAGTACTTCTTGTCTTCGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCATGATCTGTAAATTGTGATTTTAGACCGAAGATCCTCAAACGATGGATTCTGATCTTTACGACGAGTTCGGTAACTACATCGGTCCCGAGTTGGACTCGGACGACGATGTAGGGGATATGGACGACAATGTTGAAGACGACGATCGCAGCGATGCTGATGAAAACGAAGAACCGGATCGAATGGAGGAGGATGAGGCGGAAGAGATTCCACAGAACCAAGTGGTGCTCCACGAAGACAAGAAGTACTAC</canonical_amplicon>
		<polymorphic_amplicon>TCATGATCTGTAAATTGTGATTTTAGACCGAAGATCCTCAAACGATGGATTCTGATCTTTACGACGAGTTCGGTAACTACATCGGTCCCGAGTTGGACTCGGACGACGATGTAGGGGATATGGACGACAATGTTGAAGACGACGATCGCAGCGATGCTGATGAARACGAAGAACCGGATCGAATGGAGGAGGATGAGGCGGAAGAGATTCCACAGAACCAAGTGGTGCTCCACGAAGACAAGAAGTACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5192</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>82312</contig_pos>
        <strand>+</strand>
        <context>CGGAACACAG[A/G]CTCCCAGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGATTGTCAAGCCAGTCTCAAAAAAGAAGTTCCAAGCTGCGGAACACAG</left_flank>
        <right_flank>CTCCCAGAGACCGTCTACAAAAAGGAGTATCTCGCAGACTTGATGGATTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTACTAGAAATTTTAGTTGTGAATAAACTGTTTGTTTTCCTCAGATATTTCTCTCTCATTGACTATATCGCCTCTTTAGGACAGAAGTCCTATATTTCGTTCCTAAACACGATTCTTCAATCTTCATGATCTGTAAATTGTGATTTTAGACCGAAGATCCTCAAACGATGGATTCTGATCTTTACGACGAGTTCGGTAACTACATCGGTCCCGAGTTGGACTCGGACGACGATGTAGGGGATATGGACGACAATGTTGAAGACGACGATCGCAGCGATGCTGATGAAAACGAAGAACCGGATCGAATGGAGGAGGATGAGGCGGAAGAGATTCCACAGAACCAAGTGGTGCTCCACGAAGACAAGAAGTACTACGCTTCGGCGCTGGAAGTGTACGGAGAAAATGTCGAGACGTTGGTGCAGGAAGAGGATGCCCAACCTCTGACTGAACCGATTGTCAAGCCAGTCTCAAAAAAGAAGTTCCAAGCTGCGGAACACAGACTCCCAGAGACCGTCTACAAAAAGGAGTATCTCGCAGACTTGATGGATTGCCCTCATATCATGAGAAACGTCGCCATTGCTGGCCATTTGCATCACGGAAAGACGACGTTCTTGGATTGCCTAATGGAGCAGACACATCCAGAATTCTACAGAGCCGAAGACGCAGACACTCGTTTCACCGACACTCTTTTCATCGAACAGCAAAGAGGATGCTCGATCAAGTCGCAACCGGTAAGCATTGTAGCTCAGGATAGTCGCAGCAAAAGCTATTTGCTAAACGTTATTGACACTCCGGGACACGTCAACTTTTCTGATGAAATGACTGCTGCGTACCGCTTGTCAGATGGAGTCGTCATTCTGGTTGACGCTCATGAAGGAGTCATGATGAACACGGAAAGAGCGATTCGTCATGCTATCCAAGAACGACTATCAGTGACGCTCTGTATCTCGAAGATCGATCGTCTTCTGTTGGAATTGAAGCTGCCACCTGCAGATGCCTA</canonical>
            <polymorphic>CTACTAGAAATTTTAGTTGTGAATAAACTGTTTGTTTTCCTCAGATATTTCTCTCTCATTGACTATATCGCCTCTTTAGGACAGAAGTCCTATATTTCGTTCCTAAACACGATTCTTCAATCTTCATGATCTGTAAATTGTGATTTTAGACCGAAGATCCTCAAACGATGGATTCTGATCTTTACGACGAGTTCGGTAACTACATCGGTCCCGAGTTGGACTCGGACGACGATGTAGGGGATATGGACGACAATGTTGAAGACGACGATCGCAGCGATGCTGATGAAAACGAAGAACCGGATCGAATGGAGGAGGATGAGGCGGAAGAGATTCCACAGAACCAAGTGGTGCTCCACGAAGACAAGAAGTACTACGCTTCGGCGCTGGAAGTGTACGGAGAAAATGTCGAGACGTTGGTGCAGGAAGAGGATGCCCAACCTCTGACTGAACCGATTGTCAAGCCAGTCTCAAAAAAGAAGTTCCAAGCTGCGGAACACAGRCTCCCAGAGACCGTCTACAAAAAGGAGTATCTCGCAGACTTGATGGATTGCCCTCATATCATGAGAAACGTCGCCATTGCTGGCCATTTGCATCACGGAAAGACGACGTTCTTGGATTGCCTAATGGAGCAGACACATCCAGAATTCTACAGAGCCGAAGACGCAGACACTCGTTTCACCGACACTCTTTTCATCGAACAGCAAAGAGGATGCTCGATCAAGTCGCAACCGGTAAGCATTGTAGCTCAGGATAGTCGCAGCAAAAGCTATTTGCTAAACGTTATTGACACTCCGGGACACGTCAACTTTTCTGATGAAATGACTGCTGCGTACCGCTTGTCAGATGGAGTCGTCATTCTGGTTGACGCTCATGAAGGAGTCATGATGAACACGGAAAGAGCGATTCGTCATGCTATCCAAGAACGACTATCAGTGACGCTCTGTATCTCGAAGATCGATCGTCTTCTGTTGGAATTGAAGCTGCCACCTGCAGATGCCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>348 170 111 110 98 60 48 30 25</canonical_bands>
                <polymorphic_bands>518 111 110 98 60 48 30 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGATTCCACAGAACCAAGT</pcr_primer_p1>
		<pcr_primer_p2>CTCATGATATGAGGGCAATC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AGAGATTCCACAGAACCAAGTGGTGCTCCACGAAGACAAGAAGTACTACGCTTCGGCGCTGGAAGTGTACGGAGAAAATGTCGAGACGTTGGTGCAGGAAGAGGATGCCCAACCTCTGACTGAACCGATTGTCAAGCCAGTCTCAAAAAAGAAGTTCCAAGCTGCGGAACACAGACTCCCAGAGACCGTCTACAAAAAGGAGTATCTCGCAGACTTGATGGATTGCCCTCATATCATGAG</canonical_amplicon>
		<polymorphic_amplicon>AGAGATTCCACAGAACCAAGTGGTGCTCCACGAAGACAAGAAGTACTACGCTTCGGCGCTGGAAGTGTACGGAGAAAATGTCGAGACGTTGGTGCAGGAAGAGGATGCCCAACCTCTGACTGAACCGATTGTCAAGCCAGTCTCAAAAAAGAAGTTCCAAGCTGCGGAACACAGRCTCCCAGAGACCGTCTACAAAAAGGAGTATCTCGCAGACTTGATGGATTGCCCTCATATCATGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5193</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>83722</contig_pos>
        <strand>+</strand>
        <context>TCGTGAAAAC[A/C]GCTACGATCG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCTGGTTGTTGGGTTTTGATCGAAGGAATCGATCAACCAATCGTGAAAAC</left_flank>
        <right_flank>GCTACGATCGCTGAACTTGAGTACGAAGACGACGTTTACATTTTCCGGCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGCTGAGCTGGGGATTCGTTTGTCCAAAGAGGAGCAAAAGATGAACGTCCGCCCGTTGATCGCTCTTATTTGCAAGAGATTCTTCGGAGATTTCAGCGCATTCGTCGATTTGGTTGTTCAGAACATCAAGTCGCCACTGGATAATGCGAAAACCAAGGTCGAACAAACGTACTTGGGTCCAGCTGATTCTCAATTAGCTATCGAAATGCACAAATGTAATGCCGAAGGACCATTGATGGTGCACACCACGAAGAACTACCCAGTTGCCGATGCCACTCAGTTCAGAGTGTTCGGAAGAGTTATGAGTGGAACATTAGAAGCCAACTCAGACGTTCGTGTTCTTGGAGAAAACTACAGTATCCAAGATGAAGAGGATTGTCGGCGAATGACAGTGGGACGTCTGTTTGTACACGTCGCCAGATACCAAATCGAAGTCTCGCGGGTTCCAGCTGGTTGTTGGGTTTTGATCGAAGGAATCGATCAACCAATCGTGAAAACCGCTACGATCGCTGAACTTGAGTACGAAGACGACGTTTACATTTTCCGGCCACTGAAATTCAACACTCGCAGTTGTGTCAAGCTGGCTGTTGAACCGATCAATCCATCAGAACTGCCGAAGATGTTGGATGGATTGAGAAAAGTGAACAAGTCCTATCCATTGCTGACAACACGAGTCGAAGAATCCGGAGAGCATGTTCTACTCGGAACTGGAGAGTTGTACATGGATTGTGTTATGCACGATATGAGAAAAGTCTTCTCAGAAATTGATATCAAGGTCGCAGATCCTGTGGTCACATTCAATGAAACAGTTATCGAAACAAGTACACTGAAGTGCTTCGCAGAGACACCAAACAAGAAGTGAGTTCTATTGAAAGATTCAGTCAAGAATCTATGTTTTTTTCCAGGAACAAGATCACAATGATGGCCGAGCCATTAGAAAAACAATTGGACGAAGACATCGAGAATGAGGTTGTCCAAATCGGCTGGAACCGACGGCGT</canonical>
            <polymorphic>TGGCTGAGCTGGGGATTCGTTTGTCCAAAGAGGAGCAAAAGATGAACGTCCGCCCGTTGATCGCTCTTATTTGCAAGAGATTCTTCGGAGATTTCAGCGCATTCGTCGATTTGGTTGTTCAGAACATCAAGTCGCCACTGGATAATGCGAAAACCAAGGTCGAACAAACGTACTTGGGTCCAGCTGATTCTCAATTAGCTATCGAAATGCACAAATGTAATGCCGAAGGACCATTGATGGTGCACACCACGAAGAACTACCCAGTTGCCGATGCCACTCAGTTCAGAGTGTTCGGAAGAGTTATGAGTGGAACATTAGAAGCCAACTCAGACGTTCGTGTTCTTGGAGAAAACTACAGTATCCAAGATGAAGAGGATTGTCGGCGAATGACAGTGGGACGTCTGTTTGTACACGTCGCCAGATACCAAATCGAAGTCTCGCGGGTTCCAGCTGGTTGTTGGGTTTTGATCGAAGGAATCGATCAACCAATCGTGAAAACMGCTACGATCGCTGAACTTGAGTACGAAGACGACGTTTACATTTTCCGGCCACTGAAATTCAACACTCGCAGTTGTGTCAAGCTGGCTGTTGAACCGATCAATCCATCAGAACTGCCGAAGATGTTGGATGGATTGAGAAAAGTGAACAAGTCCTATCCATTGCTGACAACACGAGTCGAAGAATCCGGAGAGCATGTTCTACTCGGAACTGGAGAGTTGTACATGGATTGTGTTATGCACGATATGAGAAAAGTCTTCTCAGAAATTGATATCAAGGTCGCAGATCCTGTGGTCACATTCAATGAAACAGTTATCGAAACAAGTACACTGAAGTGCTTCGCAGAGACACCAAACAAGAAGTGAGTTCTATTGAAAGATTCAGTCAAGAATCTATGTTTTTTTCCAGGAACAAGATCACAATGATGGCCGAGCCATTAGAAAAACAATTGGACGAAGACATCGAGAATGAGGTTGTCCAAATCGGCTGGAACCGACGGCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 449 50</canonical_bands>
                <polymorphic_bands>950 50</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAGATACCAAATCGAAGTCT</pcr_primer_p1>
		<pcr_primer_p2>AATGGATAGGACTTGTTCACTTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CCAGATACCAAATCGAAGTCTCGCGGGTTCCAGCTGGTTGTTGGGTTTTGATCGAAGGAATCGATCAACCAATCGTGAAAACCGCTACGATCGCTGAACTTGAGTACGAAGACGACGTTTACATTTTCCGGCCACTGAAATTCAACACTCGCAGTTGTGTCAAGCTGGCTGTTGAACCGATCAATCCATCAGAACTGCCGAAGATGTTGGATGGATTGAGAAAAGTGAACAAGTCCTATCCATT</canonical_amplicon>
		<polymorphic_amplicon>CCAGATACCAAATCGAAGTCTCGCGGGTTCCAGCTGGTTGTTGGGTTTTGATCGAAGGAATCGATCAACCAATCGTGAAAACMGCTACGATCGCTGAACTTGAGTACGAAGACGACGTTTACATTTTCCGGCCACTGAAATTCAACACTCGCAGTTGTGTCAAGCTGGCTGTTGAACCGATCAATCCATCAGAACTGCCGAAGATGTTGGATGGATTGAGAAAAGTGAACAAGTCCTATCCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5194</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>91501</contig_pos>
        <strand>+</strand>
        <context>AATGACATAA[C/T]AAGTATGGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTATTTGTTTCACACAATTTTTCTATTTAGACATTCTTGAAATGACATAA</left_flank>
        <right_flank>AAGTATGGGTAACACAATACTGACAGGACGCTCGAATGCGATTGCTCCGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTTGCCCGAAGAGCCCACTCCCGCTACTGGATCCAAAACTCGAAGAACCGAATGACTTGTTCTGACCGAACATTTTGGCTGAAAGAATTAACTCAATGAGAAACGATCGGACATAAAAATTACAAAAAAACAGCCTTCCAGCCAGTTATTCGATAAACTTGAAGAAAAATGAGACAAACGAGTTGGCGGCTGATTGGGAAACAAAATAATTCAAACTTCGAAAAAAGACGGAACGAGGGAATCCAAAAATTGGCATCGGAGCGCGCTTACAACACTACATCACGGTTGCTCTGCGTCCCTTCGTTTAGCACACTCTCTCGCTGCGCAGCCGACTTTGGACAGCTCGCTTCGTCTCTATTTTCCCGCAATTTCGTGGCCTTTCCTGGCTTTTATGTACAAACCAGCTTTGCGAACTTGTTACGATTCATATTACGAATAACCCAAAACTATTTGTTTCACACAATTTTTCTATTTAGACATTCTTGAAATGACATAACAAGTATGGGTAACACAATACTGACAGGACGCTCGAATGCGATTGCTCCGATAATTAGTGCAGAAGACGCCAGAACTCATAGTAAAACTGAAAAACAATGGTTGAAATTATGATGTTTGAATTTTCAGTAACCGAAGAAGAGTATCGACGGATTCGGCAGGCATTCCAGAGATTTAAGAATGGCTGTATCAACTACGATGTAAGAATTTCAATTTTAATTTTTTTTCCTCAATGTTAAAATTCAGGAATTTTGCTACCATGTCCTCGGAGGAGCACAAATTCCAGAAGACAAACGACGTCTTCTGTTCAGCTTCTTCTCTCATGGTGCCGAGACGATTTCTTTCGATAATCTCCTATCCTCGCTCGTCGGATTATGTAGAGTAGAAGAAGTGCAATCGAGTAAGGGGTTCCTGAATTTTTCAACGAATTCTTTTTTTTCAGGATTCATTGAAGAATATCATGAATTCGCTTCGTGGGGATTGAGTCCGCCTAAGCTCACGA</canonical>
            <polymorphic>TATTTTGCCCGAAGAGCCCACTCCCGCTACTGGATCCAAAACTCGAAGAACCGAATGACTTGTTCTGACCGAACATTTTGGCTGAAAGAATTAACTCAATGAGAAACGATCGGACATAAAAATTACAAAAAAACAGCCTTCCAGCCAGTTATTCGATAAACTTGAAGAAAAATGAGACAAACGAGTTGGCGGCTGATTGGGAAACAAAATAATTCAAACTTCGAAAAAAGACGGAACGAGGGAATCCAAAAATTGGCATCGGAGCGCGCTTACAACACTACATCACGGTTGCTCTGCGTCCCTTCGTTTAGCACACTCTCTCGCTGCGCAGCCGACTTTGGACAGCTCGCTTCGTCTCTATTTTCCCGCAATTTCGTGGCCTTTCCTGGCTTTTATGTACAAACCAGCTTTGCGAACTTGTTACGATTCATATTACGAATAACCCAAAACTATTTGTTTCACACAATTTTTCTATTTAGACATTCTTGAAATGACATAAYAAGTATGGGTAACACAATACTGACAGGACGCTCGAATGCGATTGCTCCGATAATTAGTGCAGAAGACGCCAGAACTCATAGTAAAACTGAAAAACAATGGTTGAAATTATGATGTTTGAATTTTCAGTAACCGAAGAAGAGTATCGACGGATTCGGCAGGCATTCCAGAGATTTAAGAATGGCTGTATCAACTACGATGTAAGAATTTCAATTTTAATTTTTTTTCCTCAATGTTAAAATTCAGGAATTTTGCTACCATGTCCTCGGAGGAGCACAAATTCCAGAAGACAAACGACGTCTTCTGTTCAGCTTCTTCTCTCATGGTGCCGAGACGATTTCTTTCGATAATCTCCTATCCTCGCTCGTCGGATTATGTAGAGTAGAAGAAGTGCAATCGAGTAAGGGGTTCCTGAATTTTTCAACGAATTCTTTTTTTTCAGGATTCATTGAAGAATATCATGAATTCGCTTCGTGGGGATTGAGTCCGCCTAAGCTCACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACCCAAAACTATTTGTTTCAC</pcr_primer_p1>
		<pcr_primer_p2>TGATACAGCCATTCTTAAATCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAACCCAAAACTATTTGTTTCACACAATTTTTCTATTTAGACATTCTTGAAATGACATAACAAGTATGGGTAACACAATACTGACAGGACGCTCGAATGCGATTGCTCCGATAATTAGTGCAGAAGACGCCAGAACTCATAGTAAAACTGAAAAACAATGGTTGAAATTATGATGTTTGAATTTTCAGTAACCGAAGAAGAGTATCGACGGATTCGGCAGGCATTCCAGAGATTTAAGAATGGCTGTATCA</canonical_amplicon>
		<polymorphic_amplicon>TAACCCAAAACTATTTGTTTCACACAATTTTTCTATTTAGACATTCTTGAAATGACATAAYAAGTATGGGTAACACAATACTGACAGGACGCTCGAATGCGATTGCTCCGATAATTAGTGCAGAAGACGCCAGAACTCATAGTAAAACTGAAAAACAATGGTTGAAATTATGATGTTTGAATTTTCAGTAACCGAAGAAGAGTATCGACGGATTCGGCAGGCATTCCAGAGATTTAAGAATGGCTGTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5195</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>96546</contig_pos>
        <strand>+</strand>
        <context>TGTAACTTTT[C/T]ATTGCATAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGAGAGATCTCTTTGAATGGGTAATTTTTTGTTCAATTTTGTAACTTTT</left_flank>
        <right_flank>ATTGCATAAAAATGTTCCCAAAGTGGTGGATTTTCATGTTTCTGCTTCGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGAACTGCCGAAAGAGCCACTTCTGAAGCCGTACGTTCAGAAGGAAAATGTACACGCGCAGATTGTAGAAGATGATTTGGAAGAGGCTCAGAACAGATTCCGAGTTGATTCCACACAAACTTACACAGTTGCAGAGGACTTTAAGGCTTTAGAAGATATTGGGAAGGATAAGAAAAATAGGGAAAAGAGTTCTGAAGGGAAGAGAGAGAGAGATCGAGTGTTGAGATGGAAAGGGATTACGGTAGAGGAGATGAAGAAGAAGAGGGTGGAAAGAACGATTTTGGATGATAGTATGGATAAGAATGGAAATTTCTTAATGCATTTGGTTTTTAGTAAGTGGTCATGCGTTCGGTGGAGAGTTGACATTCATAATGGGATCGTCGGGTGCTGGAAAAACTACACTTTTGAATGTGCTAACTGGAAGAAATAAGGGAAGTTTGAGAACGAATGGAGAGATCTCTTTGAATGGGTAATTTTTTGTTCAATTTTGTAACTTTTCATTGCATAAAAATGTTCCCAAAGTGGTGGATTTTCATGTTTCTGCTTCGATAAAACTCAGAAATGTTTGAAATCCCTGACAAACGCCGCGAAGCGCGCTCAGTCTCGTCCAAATTGTTTTCATGTAATTTTTGAGCCATTTGTGAGGTCAACGAGACTTTCTTGTCCTTATTGTCGAGTTTTCAATTAAATAATTCAATTTTTCTGAAAAAAAGAGAATCATGACCGAAAACGGCGTCATTTTGAAGGGTTTTGAATTTTTTAAAAGTAAGATTAGGAAAATTCATAACTCTGGGAGCATATTAAACCAAAAACATATATGAAATTTTGGTTAAAGTCCCCTTCAATCAAATTTAACCTAAATACTAGGTAAGATTTCCAGACGTAAGATGACGTCTTCTGGAATGAAACAACTCAGCGCTTATGTTCAACAAGAAGATGTTTTCATGGCGAGTCAAACAGTTTCAGAAGTTCTTCATTTTGCTGTCAAAATGAGAAGTC</canonical>
            <polymorphic>TCGAACTGCCGAAAGAGCCACTTCTGAAGCCGTACGTTCAGAAGGAAAATGTACACGCGCAGATTGTAGAAGATGATTTGGAAGAGGCTCAGAACAGATTCCGAGTTGATTCCACACAAACTTACACAGTTGCAGAGGACTTTAAGGCTTTAGAAGATATTGGGAAGGATAAGAAAAATAGGGAAAAGAGTTCTGAAGGGAAGAGAGAGAGAGATCGAGTGTTGAGATGGAAAGGGATTACGGTAGAGGAGATGAAGAAGAAGAGGGTGGAAAGAACGATTTTGGATGATAGTATGGATAAGAATGGAAATTTCTTAATGCATTTGGTTTTTAGTAAGTGGTCATGCGTTCGGTGGAGAGTTGACATTCATAATGGGATCGTCGGGTGCTGGAAAAACTACACTTTTGAATGTGCTAACTGGAAGAAATAAGGGAAGTTTGAGAACGAATGGAGAGATCTCTTTGAATGGGTAATTTTTTGTTCAATTTTGTAACTTTTYATTGCATAAAAATGTTCCCAAAGTGGTGGATTTTCATGTTTCTGCTTCGATAAAACTCAGAAATGTTTGAAATCCCTGACAAACGCCGCGAAGCGCGCTCAGTCTCGTCCAAATTGTTTTCATGTAATTTTTGAGCCATTTGTGAGGTCAACGAGACTTTCTTGTCCTTATTGTCGAGTTTTCAATTAAATAATTCAATTTTTCTGAAAAAAAGAGAATCATGACCGAAAACGGCGTCATTTTGAAGGGTTTTGAATTTTTTAAAAGTAAGATTAGGAAAATTCATAACTCTGGGAGCATATTAAACCAAAAACATATATGAAATTTTGGTTAAAGTCCCCTTCAATCAAATTTAACCTAAATACTAGGTAAGATTTCCAGACGTAAGATGACGTCTTCTGGAATGAAACAACTCAGCGCTTATGTTCAACAAGAAGATGTTTTCATGGCGAGTCAAACAGTTTCAGAAGTTCTTCATTTTGCTGTCAAAATGAGAAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGAACGAATGGAGAGAT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAACCCTTCAAAATGA</pcr_primer_p2>
		<pcr_amplicon_size>318</pcr_amplicon_size>
		<canonical_amplicon>TTGAGAACGAATGGAGAGATCTCTTTGAATGGGTAATTTTTTGTTCAATTTTGTAACTTTTCATTGCATAAAAATGTTCCCAAAGTGGTGGATTTTCATGTTTCTGCTTCGATAAAACTCAGAAATGTTTGAAATCCCTGACAAACGCCGCGAAGCGCGCTCAGTCTCGTCCAAATTGTTTTCATGTAATTTTTGAGCCATTTGTGAGGTCAACGAGACTTTCTTGTCCTTATTGTCGAGTTTTCAATTAAATAATTCAATTTTTCTGAAAAAAAGAGAATCATGACCGAAAACGGCGTCATTTTGAAGGGTTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>TTGAGAACGAATGGAGAGATCTCTTTGAATGGGTAATTTTTTGTTCAATTTTGTAACTTTTYATTGCATAAAAATGTTCCCAAAGTGGTGGATTTTCATGTTTCTGCTTCGATAAAACTCAGAAATGTTTGAAATCCCTGACAAACGCCGCGAAGCGCGCTCAGTCTCGTCCAAATTGTTTTCATGTAATTTTTGAGCCATTTGTGAGGTCAACGAGACTTTCTTGTCCTTATTGTCGAGTTTTCAATTAAATAATTCAATTTTTCTGAAAAAAAGAGAATCATGACCGAAAACGGCGTCATTTTGAAGGGTTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5196</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>96388</contig_pos>
        <strand>+</strand>
        <context>TAGTAAGTGG[G/T]CATGCGTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTATGGATAAGAATGGAAATTTCTTAATGCATTTGGTTTTTAGTAAGTGG</left_flank>
        <right_flank>CATGCGTTCGGTGGAGAGTTGACATTCATAATGGGATCGTCGGGTGCTGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTAGCGAACCACAAGAGGTAATTAAGCGCCGCGCCAGCAATCAACGCCCCTGCCTGTTTCCAGCAAAACACGCAACCTTTGAGCGAAGATTATAAATCGGATCGTACACAAGTGGAAACTGAAAAATCTCCACCCAAATCAACGGATAAAGAGAGAATCGAACTGCCGAAAGAGCCACTTCTGAAGCCGTACGTTCAGAAGGAAAATGTACACGCGCAGATTGTAGAAGATGATTTGGAAGAGGCTCAGAACAGATTCCGAGTTGATTCCACACAAACTTACACAGTTGCAGAGGACTTTAAGGCTTTAGAAGATATTGGGAAGGATAAGAAAAATAGGGAAAAGAGTTCTGAAGGGAAGAGAGAGAGAGATCGAGTGTTGAGATGGAAAGGGATTACGGTAGAGGAGATGAAGAAGAAGAGGGTGGAAAGAACGATTTTGGATGATAGTATGGATAAGAATGGAAATTTCTTAATGCATTTGGTTTTTAGTAAGTGGTCATGCGTTCGGTGGAGAGTTGACATTCATAATGGGATCGTCGGGTGCTGGAAAAACTACACTTTTGAATGTGCTAACTGGAAGAAATAAGGGAAGTTTGAGAACGAATGGAGAGATCTCTTTGAATGGGTAATTTTTTGTTCAATTTTGTAACTTTTCATTGCATAAAAATGTTCCCAAAGTGGTGGATTTTCATGTTTCTGCTTCGATAAAACTCAGAAATGTTTGAAATCCCTGACAAACGCCGCGAAGCGCGCTCAGTCTCGTCCAAATTGTTTTCATGTAATTTTTGAGCCATTTGTGAGGTCAACGAGACTTTCTTGTCCTTATTGTCGAGTTTTCAATTAAATAATTCAATTTTTCTGAAAAAAAGAGAATCATGACCGAAAACGGCGTCATTTTGAAGGGTTTTGAATTTTTTAAAAGTAAGATTAGGAAAATTCATAACTCTGGGAGCATATTAAACCAAAAACATATATGAAATTTTGGTTAAAGTCCCCT</canonical>
            <polymorphic>CTTAGCGAACCACAAGAGGTAATTAAGCGCCGCGCCAGCAATCAACGCCCCTGCCTGTTTCCAGCAAAACACGCAACCTTTGAGCGAAGATTATAAATCGGATCGTACACAAGTGGAAACTGAAAAATCTCCACCCAAATCAACGGATAAAGAGAGAATCGAACTGCCGAAAGAGCCACTTCTGAAGCCGTACGTTCAGAAGGAAAATGTACACGCGCAGATTGTAGAAGATGATTTGGAAGAGGCTCAGAACAGATTCCGAGTTGATTCCACACAAACTTACACAGTTGCAGAGGACTTTAAGGCTTTAGAAGATATTGGGAAGGATAAGAAAAATAGGGAAAAGAGTTCTGAAGGGAAGAGAGAGAGAGATCGAGTGTTGAGATGGAAAGGGATTACGGTAGAGGAGATGAAGAAGAAGAGGGTGGAAAGAACGATTTTGGATGATAGTATGGATAAGAATGGAAATTTCTTAATGCATTTGGTTTTTAGTAAGTGGKCATGCGTTCGGTGGAGAGTTGACATTCATAATGGGATCGTCGGGTGCTGGAAAAACTACACTTTTGAATGTGCTAACTGGAAGAAATAAGGGAAGTTTGAGAACGAATGGAGAGATCTCTTTGAATGGGTAATTTTTTGTTCAATTTTGTAACTTTTCATTGCATAAAAATGTTCCCAAAGTGGTGGATTTTCATGTTTCTGCTTCGATAAAACTCAGAAATGTTTGAAATCCCTGACAAACGCCGCGAAGCGCGCTCAGTCTCGTCCAAATTGTTTTCATGTAATTTTTGAGCCATTTGTGAGGTCAACGAGACTTTCTTGTCCTTATTGTCGAGTTTTCAATTAAATAATTCAATTTTTCTGAAAAAAAGAGAATCATGACCGAAAACGGCGTCATTTTGAAGGGTTTTGAATTTTTTAAAAGTAAGATTAGGAAAATTCATAACTCTGGGAGCATATTAAACCAAAAACATATATGAAATTTTGGTTAAAGTCCCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAGAGAGAGAGATCGAGTGTT</pcr_primer_p1>
		<pcr_primer_p2>GTTCTCAAACTTCCCTTATTTCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAGAGAGAGAGAGATCGAGTGTTGAGATGGAAAGGGATTACGGTAGAGGAGATGAAGAAGAAGAGGGTGGAAAGAACGATTTTGGATGATAGTATGGATAAGAATGGAAATTTCTTAATGCATTTGGTTTTTAGTAAGTGGTCATGCGTTCGGTGGAGAGTTGACATTCATAATGGGATCGTCGGGTGCTGGAAAAACTACACTTTTGAATGTGCTAACTGGAAGAAATAAGGGAAGTTTGAGAAC</canonical_amplicon>
		<polymorphic_amplicon>AAGAGAGAGAGAGATCGAGTGTTGAGATGGAAAGGGATTACGGTAGAGGAGATGAAGAAGAAGAGGGTGGAAAGAACGATTTTGGATGATAGTATGGATAAGAATGGAAATTTCTTAATGCATTTGGTTTTTAGTAAGTGGKCATGCGTTCGGTGGAGAGTTGACATTCATAATGGGATCGTCGGGTGCTGGAAAAACTACACTTTTGAATGTGCTAACTGGAAGAAATAAGGGAAGTTTGAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5197</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>96373</contig_pos>
        <strand>+</strand>
        <context>AATGCATTTG[A/G]TTTTTAGTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGATTTTGGATGATAGTATGGATAAGAATGGAAATTTCTTAATGCATTTG</left_flank>
        <right_flank>TTTTTAGTAAGTGGTCATGCGTTCGGTGGAGAGTTGACATTCATAATGGG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGCCTGACGACGCGCTTAGCGAACCACAAGAGGTAATTAAGCGCCGCGCCAGCAATCAACGCCCCTGCCTGTTTCCAGCAAAACACGCAACCTTTGAGCGAAGATTATAAATCGGATCGTACACAAGTGGAAACTGAAAAATCTCCACCCAAATCAACGGATAAAGAGAGAATCGAACTGCCGAAAGAGCCACTTCTGAAGCCGTACGTTCAGAAGGAAAATGTACACGCGCAGATTGTAGAAGATGATTTGGAAGAGGCTCAGAACAGATTCCGAGTTGATTCCACACAAACTTACACAGTTGCAGAGGACTTTAAGGCTTTAGAAGATATTGGGAAGGATAAGAAAAATAGGGAAAAGAGTTCTGAAGGGAAGAGAGAGAGAGATCGAGTGTTGAGATGGAAAGGGATTACGGTAGAGGAGATGAAGAAGAAGAGGGTGGAAAGAACGATTTTGGATGATAGTATGGATAAGAATGGAAATTTCTTAATGCATTTGGTTTTTAGTAAGTGGTCATGCGTTCGGTGGAGAGTTGACATTCATAATGGGATCGTCGGGTGCTGGAAAAACTACACTTTTGAATGTGCTAACTGGAAGAAATAAGGGAAGTTTGAGAACGAATGGAGAGATCTCTTTGAATGGGTAATTTTTTGTTCAATTTTGTAACTTTTCATTGCATAAAAATGTTCCCAAAGTGGTGGATTTTCATGTTTCTGCTTCGATAAAACTCAGAAATGTTTGAAATCCCTGACAAACGCCGCGAAGCGCGCTCAGTCTCGTCCAAATTGTTTTCATGTAATTTTTGAGCCATTTGTGAGGTCAACGAGACTTTCTTGTCCTTATTGTCGAGTTTTCAATTAAATAATTCAATTTTTCTGAAAAAAAGAGAATCATGACCGAAAACGGCGTCATTTTGAAGGGTTTTGAATTTTTTAAAAGTAAGATTAGGAAAATTCATAACTCTGGGAGCATATTAAACCAAAAACATATATGAAATTT</canonical>
            <polymorphic>ACGCCTGACGACGCGCTTAGCGAACCACAAGAGGTAATTAAGCGCCGCGCCAGCAATCAACGCCCCTGCCTGTTTCCAGCAAAACACGCAACCTTTGAGCGAAGATTATAAATCGGATCGTACACAAGTGGAAACTGAAAAATCTCCACCCAAATCAACGGATAAAGAGAGAATCGAACTGCCGAAAGAGCCACTTCTGAAGCCGTACGTTCAGAAGGAAAATGTACACGCGCAGATTGTAGAAGATGATTTGGAAGAGGCTCAGAACAGATTCCGAGTTGATTCCACACAAACTTACACAGTTGCAGAGGACTTTAAGGCTTTAGAAGATATTGGGAAGGATAAGAAAAATAGGGAAAAGAGTTCTGAAGGGAAGAGAGAGAGAGATCGAGTGTTGAGATGGAAAGGGATTACGGTAGAGGAGATGAAGAAGAAGAGGGTGGAAAGAACGATTTTGGATGATAGTATGGATAAGAATGGAAATTTCTTAATGCATTTGRTTTTTAGTAAGTGGTCATGCGTTCGGTGGAGAGTTGACATTCATAATGGGATCGTCGGGTGCTGGAAAAACTACACTTTTGAATGTGCTAACTGGAAGAAATAAGGGAAGTTTGAGAACGAATGGAGAGATCTCTTTGAATGGGTAATTTTTTGTTCAATTTTGTAACTTTTCATTGCATAAAAATGTTCCCAAAGTGGTGGATTTTCATGTTTCTGCTTCGATAAAACTCAGAAATGTTTGAAATCCCTGACAAACGCCGCGAAGCGCGCTCAGTCTCGTCCAAATTGTTTTCATGTAATTTTTGAGCCATTTGTGAGGTCAACGAGACTTTCTTGTCCTTATTGTCGAGTTTTCAATTAAATAATTCAATTTTTCTGAAAAAAAGAGAATCATGACCGAAAACGGCGTCATTTTGAAGGGTTTTGAATTTTTTAAAAGTAAGATTAGGAAAATTCATAACTCTGGGAGCATATTAAACCAAAAACATATATGAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAGAGAGAGAGATCGAGTGTT</pcr_primer_p1>
		<pcr_primer_p2>GTTCTCAAACTTCCCTTATTTCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAGAGAGAGAGAGATCGAGTGTTGAGATGGAAAGGGATTACGGTAGAGGAGATGAAGAAGAAGAGGGTGGAAAGAACGATTTTGGATGATAGTATGGATAAGAATGGAAATTTCTTAATGCATTTGGTTTTTAGTAAGTGGTCATGCGTTCGGTGGAGAGTTGACATTCATAATGGGATCGTCGGGTGCTGGAAAAACTACACTTTTGAATGTGCTAACTGGAAGAAATAAGGGAAGTTTGAGAAC</canonical_amplicon>
		<polymorphic_amplicon>AAGAGAGAGAGAGATCGAGTGTTGAGATGGAAAGGGATTACGGTAGAGGAGATGAAGAAGAAGAGGGTGGAAAGAACGATTTTGGATGATAGTATGGATAAGAATGGAAATTTCTTAATGCATTTGRTTTTTAGTAAGTGGTCATGCGTTCGGTGGAGAGTTGACATTCATAATGGGATCGTCGGGTGCTGGAAAAACTACACTTTTGAATGTGCTAACTGGAAGAAATAAGGGAAGTTTGAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5198</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>96948</contig_pos>
        <strand></strand>
        <context>ACGTCTTCTG[G/A]AATGAAACAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTAACCTAAATACTAGGTAAGATTTCCAGACGTAAGATGACGTCTTCTG</left_flank>
        <right_flank>AATGAAACAACTCAGCGCTTATGTTCAACAAGAAGATGTTTTCATGGCGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTGAATGTGCTAACTGGAAGAAATAAGGGAAGTTTGAGAACGAATGGAGAGATCTCTTTGAATGGGTAATTTTTTGTTCAATTTTGTAACTTTTCATTGCATAAAAATGTTCCCAAAGTGGTGGATTTTCATGTTTCTGCTTCGATAAAACTCAGAAATGTTTGAAATCCCTGACAAACGCCGCGAAGCGCGCTCAGTCTCGTCCAAATTGTTTTCATGTAATTTTTGAGCCATTTGTGAGGTCAACGAGACTTTCTTGTCCTTATTGTCGAGTTTTCAATTAAATAATTCAATTTTTCTGAAAAAAAGAGAATCATGACCGAAAACGGCGTCATTTTGAAGGGTTTTGAATTTTTTAAAAGTAAGATTAGGAAAATTCATAACTCTGGGAGCATATTAAACCAAAAACATATATGAAATTTTGGTTAAAGTCCCCTTCAATCAAATTTAACCTAAATACTAGGTAAGATTTCCAGACGTAAGATGACGTCTTCTGGAATGAAACAACTCAGCGCTTATGTTCAACAAGAAGATGTTTTCATGGCGAGTCAAACAGTTTCAGAAGTTCTTCATTTTGCTGTCAAAATGAGAAGTCCGGAGAGGTTGAGCAAGAAGAAAAGAAAGAATTTAGTAGAGAGTATGTTGACGACTTTTGGATTGAAGAATTGTGAGAATACCCGAGTAGGATCAGTAAAAGAGAAGGGAATATCGAGAGGGGAGAAGAAAAGATTGACGATTGCTTGTGAGGTTAGAATTACTAGAAACCAGAGATTTCCGAATTTTGGATTCTCAGATTCCAGATTTCGTACTCCGGATTCCGAATTTCGGATTCTGGATTCCAAATTCCAGACTCCAGATTCCAGATTCTGAGATTATGAGGTTCTGAGATTCTGAGATTCTGAGACTCTGAGACTTTGAGATTCTGAGATTCTGAGACTCTGAGACTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAGATTCTG</canonical>
            <polymorphic>CTTTTGAATGTGCTAACTGGAAGAAATAAGGGAAGTTTGAGAACGAATGGAGAGATCTCTTTGAATGGGTAATTTTTTGTTCAATTTTGTAACTTTTCATTGCATAAAAATGTTCCCAAAGTGGTGGATTTTCATGTTTCTGCTTCGATAAAACTCAGAAATGTTTGAAATCCCTGACAAACGCCGCGAAGCGCGCTCAGTCTCGTCCAAATTGTTTTCATGTAATTTTTGAGCCATTTGTGAGGTCAACGAGACTTTCTTGTCCTTATTGTCGAGTTTTCAATTAAATAATTCAATTTTTCTGAAAAAAAGAGAATCATGACCGAAAACGGCGTCATTTTGAAGGGTTTTGAATTTTTTAAAAGTAAGATTAGGAAAATTCATAACTCTGGGAGCATATTAAACCAAAAACATATATGAAATTTTGGTTAAAGTCCCCTTCAATCAAATTTAACCTAAATACTAGGTAAGATTTCCAGACGTAAGATGACGTCTTCTGRAATGAAACAACTCAGCGCTTATGTTCAACAAGAAGATGTTTTCATGGCGAGTCAAACAGTTTCAGAAGTTCTTCATTTTGCTGTCAAAATGAGAAGTCCGGAGAGGTTGAGCAAGAAGAAAAGAAAGAATTTAGTAGAGAGTATGTTGACGACTTTTGGATTGAAGAATTGTGAGAATACCCGAGTAGGATCAGTAAAAGAGAAGGGAATATCGAGAGGGGAGAAGAAAAGATTGACGATTGCTTGTGAGGTTAGAATTACTAGAAACCAGAGATTTCCGAATTTTGGATTCTCAGATTCCAGATTTCGTACTCCGGATTCCGAATTTCGGATTCTGGATTCCAAATTCCAGACTCCAGATTCCAGATTCTGAGATTATGAGGTTCTGAGATTCTGAGATTCTGAGACTCTGAGACTTTGAGATTCTGAGATTCTGAGACTCTGAGACTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAGATTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>318 158 137 115 101 87 21 21 14 14 7 7</canonical_bands>
                <polymorphic_bands>318 158 137 122 115 87 21 14 14 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCTTCAATCAAATTTAACCTA</pcr_primer_p1>
		<pcr_primer_p2>GGTATTCTCACAATTCTTCAATC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CCCTTCAATCAAATTTAACCTAAATACTAGGTAAGATTTCCAGACGTAAGATGACGTCTTCTGGAATGAAACAACTCAGCGCTTATGTTCAACAAGAAGATGTTTTCATGGCGAGTCAAACAGTTTCAGAAGTTCTTCATTTTGCTGTCAAAATGAGAAGTCCGGAGAGGTTGAGCAAGAAGAAAAGAAAGAATTTAGTAGAGAGTATGTTGACGACTTTTGGATTGAAGAATTGTGAGAATACC</canonical_amplicon>
		<polymorphic_amplicon>CCCTTCAATCAAATTTAACCTAAATACTAGGTAAGATTTCCAGACGTAAGATGACGTCTTCTGRAATGAAACAACTCAGCGCTTATGTTCAACAAGAAGATGTTTTCATGGCGAGTCAAACAGTTTCAGAAGTTCTTCATTTTGCTGTCAAAATGAGAAGTCCGGAGAGGTTGAGCAAGAAGAAAAGAAAGAATTTAGTAGAGAGTATGTTGACGACTTTTGGATTGAAGAATTGTGAGAATACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5199</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>97073</contig_pos>
        <strand></strand>
        <context>GAAGAAAAGA[A/G]AGAATTTAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTGCTGTCAAAATGAGAAGTCCGGAGAGGTTGAGCAAGAAGAAAAGA</left_flank>
        <right_flank>AGAATTTAGTAGAGAGTATGTTGACGACTTTTGGATTGAAGAATTGTGAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATTTTCATGTTTCTGCTTCGATAAAACTCAGAAATGTTTGAAATCCCTGACAAACGCCGCGAAGCGCGCTCAGTCTCGTCCAAATTGTTTTCATGTAATTTTTGAGCCATTTGTGAGGTCAACGAGACTTTCTTGTCCTTATTGTCGAGTTTTCAATTAAATAATTCAATTTTTCTGAAAAAAAGAGAATCATGACCGAAAACGGCGTCATTTTGAAGGGTTTTGAATTTTTTAAAAGTAAGATTAGGAAAATTCATAACTCTGGGAGCATATTAAACCAAAAACATATATGAAATTTTGGTTAAAGTCCCCTTCAATCAAATTTAACCTAAATACTAGGTAAGATTTCCAGACGTAAGATGACGTCTTCTGGAATGAAACAACTCAGCGCTTATGTTCAACAAGAAGATGTTTTCATGGCGAGTCAAACAGTTTCAGAAGTTCTTCATTTTGCTGTCAAAATGAGAAGTCCGGAGAGGTTGAGCAAGAAGAAAAGAAAGAATTTAGTAGAGAGTATGTTGACGACTTTTGGATTGAAGAATTGTGAGAATACCCGAGTAGGATCAGTAAAAGAGAAGGGAATATCGAGAGGGGAGAAGAAAAGATTGACGATTGCTTGTGAGGTTAGAATTACTAGAAACCAGAGATTTCCGAATTTTGGATTCTCAGATTCCAGATTTCGTACTCCGGATTCCGAATTTCGGATTCTGGATTCCAAATTCCAGACTCCAGATTCCAGATTCTGAGATTATGAGGTTCTGAGATTCTGAGATTCTGAGACTCTGAGACTTTGAGATTCTGAGATTCTGAGACTCTGAGACTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTAAGATTCTGAGGTTTTGAGATTCTGAGATTCTGAGATTTTGAGGTTCTGAGATTCTGAGATTCTGAGACTCTGAGACTCTGAGATTCTGAGACTCTGAGACTCTGAGATT</canonical>
            <polymorphic>GGATTTTCATGTTTCTGCTTCGATAAAACTCAGAAATGTTTGAAATCCCTGACAAACGCCGCGAAGCGCGCTCAGTCTCGTCCAAATTGTTTTCATGTAATTTTTGAGCCATTTGTGAGGTCAACGAGACTTTCTTGTCCTTATTGTCGAGTTTTCAATTAAATAATTCAATTTTTCTGAAAAAAAGAGAATCATGACCGAAAACGGCGTCATTTTGAAGGGTTTTGAATTTTTTAAAAGTAAGATTAGGAAAATTCATAACTCTGGGAGCATATTAAACCAAAAACATATATGAAATTTTGGTTAAAGTCCCCTTCAATCAAATTTAACCTAAATACTAGGTAAGATTTCCAGACGTAAGATGACGTCTTCTGGAATGAAACAACTCAGCGCTTATGTTCAACAAGAAGATGTTTTCATGGCGAGTCAAACAGTTTCAGAAGTTCTTCATTTTGCTGTCAAAATGAGAAGTCCGGAGAGGTTGAGCAAGAAGAAAAGARAGAATTTAGTAGAGAGTATGTTGACGACTTTTGGATTGAAGAATTGTGAGAATACCCGAGTAGGATCAGTAAAAGAGAAGGGAATATCGAGAGGGGAGAAGAAAAGATTGACGATTGCTTGTGAGGTTAGAATTACTAGAAACCAGAGATTTCCGAATTTTGGATTCTCAGATTCCAGATTTCGTACTCCGGATTCCGAATTTCGGATTCTGGATTCCAAATTCCAGACTCCAGATTCCAGATTCTGAGATTATGAGGTTCTGAGATTCTGAGATTCTGAGACTCTGAGACTTTGAGATTCTGAGATTCTGAGACTCTGAGACTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTAAGATTCTGAGGTTTTGAGATTCTGAGATTCTGAGATTTTGAGGTTCTGAGATTCTGAGATTCTGAGACTCTGAGACTCTGAGATTCTGAGACTCTGAGACTCTGAGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTAAGATTTCCAGACGTAAGAT</pcr_primer_p1>
		<pcr_primer_p2>TCGATATTCCCTTCTCTTTTACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTAAGATTTCCAGACGTAAGATGACGTCTTCTGGAATGAAACAACTCAGCGCTTATGTTCAACAAGAAGATGTTTTCATGGCGAGTCAAACAGTTTCAGAAGTTCTTCATTTTGCTGTCAAAATGAGAAGTCCGGAGAGGTTGAGCAAGAAGAAAAGAAAGAATTTAGTAGAGAGTATGTTGACGACTTTTGGATTGAAGAATTGTGAGAATACCCGAGTAGGATCAGTAAAAGAGAAGGGAATATCGA</canonical_amplicon>
		<polymorphic_amplicon>GGTAAGATTTCCAGACGTAAGATGACGTCTTCTGGAATGAAACAACTCAGCGCTTATGTTCAACAAGAAGATGTTTTCATGGCGAGTCAAACAGTTTCAGAAGTTCTTCATTTTGCTGTCAAAATGAGAAGTCCGGAGAGGTTGAGCAAGAAGAAAAGARAGAATTTAGTAGAGAGTATGTTGACGACTTTTGGATTGAAGAATTGTGAGAATACCCGAGTAGGATCAGTAAAAGAGAAGGGAATATCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5200</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>105306</contig_pos>
        <strand>+</strand>
        <context>TATTCCAGAT[C/T]TTCCTGAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTGAACGAAGGTAATTTAAAACTTTAGTAAATCGCTTATTCCAGAT</left_flank>
        <right_flank>TTCCTGAACTCAATGCATCGCTATGTTCCCCGATTCCATATTGTCCGATG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTAGTGAATCACTTTTTTTGTACAAACACATCCAAAGGAGATGGAAAAATTTAAAGATATTGTAGTTATAAACAACGTTTCGTTTGAGAATTGATTGTGCTAAAAAGCGGGCTGAAAACTCGACTTTTTGGTGTCTGAAACTGCGAAAATCGATGTTTTCAGCGTCTTTCACCCCGAAAATCGATTTCGGAGCTCTTGGATTACTGTAGTTTGATTTTTGTGCAAACACCGAAAACATCTACCACATTTTACAACGAAATTTGAATGTTCAATGAAAAAATACAAGTTTGTTTTCAGTATATTCGCCGCTTTTTCTCGTAATTTCTGGTACATTGTCTCTTTATCTGCACAGAATCGGAGCTATAGTAATCCCGGGGCTAGGATCTTCGTTTAGGACCGTTTTTTTTAAATTTAAAATGAAATTTATTTGGTCATTTTCGTGAATTTTTTTTTGAACGAAGGTAATTTAAAACTTTAGTAAATCGCTTATTCCAGATTTTCCTGAACTCAATGCATCGCTATGTTCCCCGATTCCATATTGTCCGATGCGACTGTTTTGGCAATCCAATCTTCTCAACTTTCAAAAGTTTCGTATTCGATCACACGGATTTTATTGCAGTAACGGCTTATCAGAATATAGAGGTATTACATACTCCAGTTTCAATCTTTTCATAATTTTCAAATTTTCAGGTAACAGCCAAAAAAATCGCCAACAACCCGTTTGCAAAGGGTTTCCGGAAACCAAATCTTGAAGAGAAACAACGAAGGAATAGTCGAGTTTTGAAGAAACAAGAAACCGTGGAATCTTCTTCAGAAGACATGGATCAACCTTCGATTTTGCCAAATATTTCTAATGAATTGATGGCTCAGTGGCAATTGGCACTATTCTCTTCATATGGATCTATTCAACCAGAGCCTCTGAATCTCAAAATTCCAGATATTCCAAAGAAAAGTGGATTCGGAGTGCTGGATTTGTTAGCTGAACCGAATCTATAATT</canonical>
            <polymorphic>TTGTAGTGAATCACTTTTTTTGTACAAACACATCCAAAGGAGATGGAAAAATTTAAAGATATTGTAGTTATAAACAACGTTTCGTTTGAGAATTGATTGTGCTAAAAAGCGGGCTGAAAACTCGACTTTTTGGTGTCTGAAACTGCGAAAATCGATGTTTTCAGCGTCTTTCACCCCGAAAATCGATTTCGGAGCTCTTGGATTACTGTAGTTTGATTTTTGTGCAAACACCGAAAACATCTACCACATTTTACAACGAAATTTGAATGTTCAATGAAAAAATACAAGTTTGTTTTCAGTATATTCGCCGCTTTTTCTCGTAATTTCTGGTACATTGTCTCTTTATCTGCACAGAATCGGAGCTATAGTAATCCCGGGGCTAGGATCTTCGTTTAGGACCGTTTTTTTTAAATTTAAAATGAAATTTATTTGGTCATTTTCGTGAATTTTTTTTTGAACGAAGGTAATTTAAAACTTTAGTAAATCGCTTATTCCAGATYTTCCTGAACTCAATGCATCGCTATGTTCCCCGATTCCATATTGTCCGATGCGACTGTTTTGGCAATCCAATCTTCTCAACTTTCAAAAGTTTCGTATTCGATCACACGGATTTTATTGCAGTAACGGCTTATCAGAATATAGAGGTATTACATACTCCAGTTTCAATCTTTTCATAATTTTCAAATTTTCAGGTAACAGCCAAAAAAATCGCCAACAACCCGTTTGCAAAGGGTTTCCGGAAACCAAATCTTGAAGAGAAACAACGAAGGAATAGTCGAGTTTTGAAGAAACAAGAAACCGTGGAATCTTCTTCAGAAGACATGGATCAACCTTCGATTTTGCCAAATATTTCTAATGAATTGATGGCTCAGTGGCAATTGGCACTATTCTCTTCATATGGATCTATTCAACCAGAGCCTCTGAATCTCAAAATTCCAGATATTCCAAAGAAAAGTGGATTCGGAGTGCTGGATTTGTTAGCTGAACCGAATCTATAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCATTTTCGTGAATTT</pcr_primer_p1>
		<pcr_primer_p2>AATTATGAAAAGATTGAAACTGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGGTCATTTTCGTGAATTTTTTTTTGAACGAAGGTAATTTAAAACTTTAGTAAATCGCTTATTCCAGATTTTCCTGAACTCAATGCATCGCTATGTTCCCCGATTCCATATTGTCCGATGCGACTGTTTTGGCAATCCAATCTTCTCAACTTTCAAAAGTTTCGTATTCGATCACACGGATTTTATTGCAGTAACGGCTTATCAGAATATAGAGGTATTACATACTCCAGTTTCAATCTTTTCATAATT</canonical_amplicon>
		<polymorphic_amplicon>TTGGTCATTTTCGTGAATTTTTTTTTGAACGAAGGTAATTTAAAACTTTAGTAAATCGCTTATTCCAGATYTTCCTGAACTCAATGCATCGCTATGTTCCCCGATTCCATATTGTCCGATGCGACTGTTTTGGCAATCCAATCTTCTCAACTTTCAAAAGTTTCGTATTCGATCACACGGATTTTATTGCAGTAACGGCTTATCAGAATATAGAGGTATTACATACTCCAGTTTCAATCTTTTCATAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5201</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>105673</contig_pos>
        <strand>+</strand>
        <context>TGAATTGATG[A/G]CTCAGTGGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGACATGGATCAACCTTCGATTTTGCCAAATATTTCTAATGAATTGATG</left_flank>
        <right_flank>CTCAGTGGCAATTGGCACTATTCTCTTCATATGGATCTATTCAACCAGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAATCCCGGGGCTAGGATCTTCGTTTAGGACCGTTTTTTTTAAATTTAAAATGAAATTTATTTGGTCATTTTCGTGAATTTTTTTTTGAACGAAGGTAATTTAAAACTTTAGTAAATCGCTTATTCCAGATTTTCCTGAACTCAATGCATCGCTATGTTCCCCGATTCCATATTGTCCGATGCGACTGTTTTGGCAATCCAATCTTCTCAACTTTCAAAAGTTTCGTATTCGATCACACGGATTTTATTGCAGTAACGGCTTATCAGAATATAGAGGTATTACATACTCCAGTTTCAATCTTTTCATAATTTTCAAATTTTCAGGTAACAGCCAAAAAAATCGCCAACAACCCGTTTGCAAAGGGTTTCCGGAAACCAAATCTTGAAGAGAAACAACGAAGGAATAGTCGAGTTTTGAAGAAACAAGAAACCGTGGAATCTTCTTCAGAAGACATGGATCAACCTTCGATTTTGCCAAATATTTCTAATGAATTGATGGCTCAGTGGCAATTGGCACTATTCTCTTCATATGGATCTATTCAACCAGAGCCTCTGAATCTCAAAATTCCAGATATTCCAAAGAAAAGTGGATTCGGAGTGCTGGATTTGTTAGCTGAACCGAATCTATAATTTTTCTTTTTTCAATTGAATTGTCTCATTTTTCTCATTTTCTACACGGGCCGATTTTGACTCTTTCTTATTTGCTACTATTTCAGTTATTTGACCTATTTAATAAATTATTACTCATGTTATTGGACTCGGTGAAAAAACAACATTTTAATGAAATGTATGGATTATTCAAAATTATTCATTAGTTTATAGTTTCGGGGTTATTAAATGTTCTGACTTCCAGAATAGAAATTTTTACAAGTGTGGATTGTAAAGATCAAAGGGTGATCTTCAAGATTAATAGAAAGCATGAATCACTTGGGTTCAAGCGAGGGGGTCAGAAAGCGCGCTCCAGCAAACTCGTAGGCCAGAAGAAATTTAATAATTTTA</canonical>
            <polymorphic>GTAATCCCGGGGCTAGGATCTTCGTTTAGGACCGTTTTTTTTAAATTTAAAATGAAATTTATTTGGTCATTTTCGTGAATTTTTTTTTGAACGAAGGTAATTTAAAACTTTAGTAAATCGCTTATTCCAGATTTTCCTGAACTCAATGCATCGCTATGTTCCCCGATTCCATATTGTCCGATGCGACTGTTTTGGCAATCCAATCTTCTCAACTTTCAAAAGTTTCGTATTCGATCACACGGATTTTATTGCAGTAACGGCTTATCAGAATATAGAGGTATTACATACTCCAGTTTCAATCTTTTCATAATTTTCAAATTTTCAGGTAACAGCCAAAAAAATCGCCAACAACCCGTTTGCAAAGGGTTTCCGGAAACCAAATCTTGAAGAGAAACAACGAAGGAATAGTCGAGTTTTGAAGAAACAAGAAACCGTGGAATCTTCTTCAGAAGACATGGATCAACCTTCGATTTTGCCAAATATTTCTAATGAATTGATGRCTCAGTGGCAATTGGCACTATTCTCTTCATATGGATCTATTCAACCAGAGCCTCTGAATCTCAAAATTCCAGATATTCCAAAGAAAAGTGGATTCGGAGTGCTGGATTTGTTAGCTGAACCGAATCTATAATTTTTCTTTTTTCAATTGAATTGTCTCATTTTTCTCATTTTCTACACGGGCCGATTTTGACTCTTTCTTATTTGCTACTATTTCAGTTATTTGACCTATTTAATAAATTATTACTCATGTTATTGGACTCGGTGAAAAAACAACATTTTAATGAAATGTATGGATTATTCAAAATTATTCATTAGTTTATAGTTTCGGGGTTATTAAATGTTCTGACTTCCAGAATAGAAATTTTTACAAGTGTGGATTGTAAAGATCAAAGGGTGATCTTCAAGATTAATAGAAAGCATGAATCACTTGGGTTCAAGCGAGGGGGTCAGAAAGCGCGCTCCAGCAAACTCGTAGGCCAGAAGAAATTTAATAATTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>296 248 168 72 67 64 50 23 12</canonical_bands>
                <polymorphic_bands>296 248 218 72 67 64 23 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAGAAACAACGAAGGAATAGT</pcr_primer_p1>
		<pcr_primer_p2>AAATTATAGATTCGGTTCAGCTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGAGAAACAACGAAGGAATAGTCGAGTTTTGAAGAAACAAGAAACCGTGGAATCTTCTTCAGAAGACATGGATCAACCTTCGATTTTGCCAAATATTTCTAATGAATTGATGGCTCAGTGGCAATTGGCACTATTCTCTTCATATGGATCTATTCAACCAGAGCCTCTGAATCTCAAAATTCCAGATATTCCAAAGAAAAGTGGATTCGGAGTGCTGGATTTGTTAGCTGAACCGAATCTATAATTT</canonical_amplicon>
		<polymorphic_amplicon>AAGAGAAACAACGAAGGAATAGTCGAGTTTTGAAGAAACAAGAAACCGTGGAATCTTCTTCAGAAGACATGGATCAACCTTCGATTTTGCCAAATATTTCTAATGAATTGATGRCTCAGTGGCAATTGGCACTATTCTCTTCATATGGATCTATTCAACCAGAGCCTCTGAATCTCAAAATTCCAGATATTCCAAAGAAAAGTGGATTCGGAGTGCTGGATTTGTTAGCTGAACCGAATCTATAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5202</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>107752</contig_pos>
        <strand>+</strand>
        <context>CCCTTCCCCT[C/T]CTCTTCTGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTATGTATTCTATGGCACCACTTGATATCACCTCCACACCCTTCCCCT</left_flank>
        <right_flank>CTCTTCTGCTCTTCTTCAAATTTGCTTTGACAGTCTTCAGTTATCCTAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTCCACTAGCACCAACATCGAGTAAAGCGTTGTACTGGGCTCAAATTTGCAGTGCAAAAATTCAAATAGTTTATCAGTAAACTGACCAAAGTTCAAGTCATTTGATCAACTTTGAGTTGAGTTATCGTTTCTCAAATTTGCTTCATCTCATGAGAATGTGCAACATTACGTCATGCATCTTTAGACAATCATAACAATACCTAGACTTCAGGAATAGCTTTGAAAATCTCAGTAGCTTTGAATCAAACGTAAAATTTGATTTCTAACGATTTTCTTGCTTCCAAGACACTCATGTCTAACGATACACCCGTTTTTATCAGTCCGGGTCATTTAGCGCCACATTGTAAAGTTAGAAAAAAAATCTACAGTAACCTTCATTGATTATCTCAACGTGTTTATATAATCACTTGCTGTCACTTATCGTGTTCTTGACAGTAGTCAATGTATCTATGTATTCTATGGCACCACTTGATATCACCTCCACACCCTTCCCCTTCTCTTCTGCTCTTCTTCAAATTTGCTTTGACAGTCTTCAGTTATCCTAATAAGTACTTCTCCATCCGCTTTCACCCTTATAAACACGTGTTCCTCGCCGCTGTTTGTCCTATGCAATCAGTAGTGTGTTCTGTGTGTCCTGAGGTTAATCTCCTATGTGAAAAGAGTAATGAGTATGATGATAGTAGCACGGGAATTAAATAGAGATCGGGAGCTTCTAAGGTGTCATATATGAAATGTTAGTTGGAAATCTACAACTCTGGGGAAACTAACAATGGACTTCAAAGAGAGTGTTTTTCAACTGCTAAGAGTAGTGTTTGAAACAACTACAGTAATCTTGGTGACAATTTTTTATAAAGAGATCCGGAAAATAATGTTACTCAAGCTACTTTTATGTCAATCTATCTGCTTCCGTTTCCGCCGTTTTTGGCTTCAAACTATGTGACAACTTGTATTATTTTTCCAAGGAAATGAGATAAGATCCGGAAAGATCAAAGGAAC</canonical>
            <polymorphic>AAATTTCCACTAGCACCAACATCGAGTAAAGCGTTGTACTGGGCTCAAATTTGCAGTGCAAAAATTCAAATAGTTTATCAGTAAACTGACCAAAGTTCAAGTCATTTGATCAACTTTGAGTTGAGTTATCGTTTCTCAAATTTGCTTCATCTCATGAGAATGTGCAACATTACGTCATGCATCTTTAGACAATCATAACAATACCTAGACTTCAGGAATAGCTTTGAAAATCTCAGTAGCTTTGAATCAAACGTAAAATTTGATTTCTAACGATTTTCTTGCTTCCAAGACACTCATGTCTAACGATACACCCGTTTTTATCAGTCCGGGTCATTTAGCGCCACATTGTAAAGTTAGAAAAAAAATCTACAGTAACCTTCATTGATTATCTCAACGTGTTTATATAATCACTTGCTGTCACTTATCGTGTTCTTGACAGTAGTCAATGTATCTATGTATTCTATGGCACCACTTGATATCACCTCCACACCCTTCCCCTYCTCTTCTGCTCTTCTTCAAATTTGCTTTGACAGTCTTCAGTTATCCTAATAAGTACTTCTCCATCCGCTTTCACCCTTATAAACACGTGTTCCTCGCCGCTGTTTGTCCTATGCAATCAGTAGTGTGTTCTGTGTGTCCTGAGGTTAATCTCCTATGTGAAAAGAGTAATGAGTATGATGATAGTAGCACGGGAATTAAATAGAGATCGGGAGCTTCTAAGGTGTCATATATGAAATGTTAGTTGGAAATCTACAACTCTGGGGAAACTAACAATGGACTTCAAAGAGAGTGTTTTTCAACTGCTAAGAGTAGTGTTTGAAACAACTACAGTAATCTTGGTGACAATTTTTTATAAAGAGATCCGGAAAATAATGTTACTCAAGCTACTTTTATGTCAATCTATCTGCTTCCGTTTCCGCCGTTTTTGGCTTCAAACTATGTGACAACTTGTATTATTTTTCCAAGGAAATGAGATAAGATCCGGAAAGATCAAAGGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTGATTATCTCAACGTGTTTAT</pcr_primer_p1>
		<pcr_primer_p2>ACACACTACTGATTGCATAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATTGATTATCTCAACGTGTTTATATAATCACTTGCTGTCACTTATCGTGTTCTTGACAGTAGTCAATGTATCTATGTATTCTATGGCACCACTTGATATCACCTCCACACCCTTCCCCTTCTCTTCTGCTCTTCTTCAAATTTGCTTTGACAGTCTTCAGTTATCCTAATAAGTACTTCTCCATCCGCTTTCACCCTTATAAACACGTGTTCCTCGCCGCTGTTTGTCCTATGCAATCAGTAGTGTGT</canonical_amplicon>
		<polymorphic_amplicon>CATTGATTATCTCAACGTGTTTATATAATCACTTGCTGTCACTTATCGTGTTCTTGACAGTAGTCAATGTATCTATGTATTCTATGGCACCACTTGATATCACCTCCACACCCTTCCCCTYCTCTTCTGCTCTTCTTCAAATTTGCTTTGACAGTCTTCAGTTATCCTAATAAGTACTTCTCCATCCGCTTTCACCCTTATAAACACGTGTTCCTCGCCGCTGTTTGTCCTATGCAATCAGTAGTGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5208</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>228468</contig_pos>
        <strand>+</strand>
        <context>GCATCCAGAA[A/T]AAGTCTGTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAA</left_flank>
        <right_flank>AAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTCCTAAAAAAGTCCCGAAAATTGCTAAAATTATTGCCGAAATGAGAATTGGGCATTTCGAAACATCTTATCTCGTTTTGTTAAAATTTCTAAAAAGTTGGAAACTACAAAATTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAACTGAAAAATTCTGGACCATTTTTGTAGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCAAGAGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAAATTAAAGCTCTTATTTTATTTTGAATTTTCTGAAGTTTTCAAAAAAAAATTGAAAATTTCTGAACCACTTTCATT</canonical>
            <polymorphic>TGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAAWAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTCCTAAAAAAGTCCCGAAAATTGCTAAAATTATTGCCGAAATGAGAATTGGGCATTTCGAAACATCTTATCTCGTTTTGTTAAAATTTCTAAAAAGTTGGAAACTACAAAATTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAACTGAAAAATTCTGGACCATTTTTGTAGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCAAGAGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAAATTAAAGCTCTTATTTTATTTTGAATTTTCTGAAGTTTTCAAAAAAAAATTGAAAATTTCTGAACCACTTTCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTTCAAAAGATTGTCAAACA</pcr_primer_p1>
		<pcr_primer_p2>TGAAAAAGAAAAACTAACCGTAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCA</canonical_amplicon>
		<polymorphic_amplicon>AAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAAWAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5209</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>228420</contig_pos>
        <strand>+</strand>
        <context>CGGTTTCAAA[A/C]GTTTTCGGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAA</left_flank>
        <right_flank>GTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAA</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTCCTAAAAAAGTCCCGAAAATTGCTAAAATTATTGCCGAAATGAGAATTGGGCATTTCGAAACATCTTATCTCGTTTTGTTAAAATTTCTAAAAAGTTGGAAACTACAAAATTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAACTGAAAAATTCTGGACCATTTTTGTAGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCAAGAGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAAATTAAAGCTCTTATTTTATTTTGAATT</canonical>
            <polymorphic>TTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAMGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTCCTAAAAAAGTCCCGAAAATTGCTAAAATTATTGCCGAAATGAGAATTGGGCATTTCGAAACATCTTATCTCGTTTTGTTAAAATTTCTAAAAAGTTGGAAACTACAAAATTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAACTGAAAAATTCTGGACCATTTTTGTAGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCAAGAGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAAATTAAAGCTCTTATTTTATTTTGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTTCAAAAGATTGTCAAACA</pcr_primer_p1>
		<pcr_primer_p2>TGAAAAAGAAAAACTAACCGTAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCA</canonical_amplicon>
		<polymorphic_amplicon>AAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAMGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5210</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>303410</contig_pos>
        <strand>+</strand>
        <context>TTCCGGGCTT[G/T]ATATTTTCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGTTCACAGACTTTTGAAACAAAAAACATCTGGAATTTTTTCCGGGCTT</left_flank>
        <right_flank>ATATTTTCTGAAATTGAGTTTGAAGCATTTTATGAGTTGATCTAAACAAT</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTCTTTTTCTTCTCCATCCATTTAATCTACTCTGGATAATCCTTGATTGTCTGCATTTTTGTGGAAAGATGCACCATAATATAATATAATTGGGGGCTTTCTCCTTTTTCTCTTCCTCTTTTTTCCCCAGTCAACTACAAAATAATGTGCACTTCTCTCCCTTTTTCCTTCTTAAGTCATATTTTAATAGTCATATTTTAATAAAGATTTTTGAAATTCCATACCAATCACGGAAATTGAGAGATGGCGAATATGTAAATTCTGGTAAACTAAAACCCCCAAAAATCTTTGAAATCCTGGATTCAGTCTGTGTAATCTGACTTTAGGATTTGCAATGCAAAATCCGAAACACAAACTAGAAAAGTGGCGTGGTATCTGGAATTTCAAAAATAGGTCCACGTTTTTGATATTCTGATGTCTGATTTCAAAAGAAAGTGTGTAGTTTAAAGTTCACAGACTTTTGAAACAAAAAACATCTGGAATTTTTTCCGGGCTTGATATTTTCTGAAATTGAGTTTGAAGCATTTTATGAGTTGATCTAAACAATTTTCAAATTCGAACCCCAAGGGTAATTTTTGGTCTTTTTGAGAAAAATCTAAAATTTATATCTTTCAAAGTGGTTGGTTCTTTTTCGGATACTTTCCAACTTTACCACAATCAACTTTGTTCCCAAAAATAGATTCAGGAAGTTCCATTTTCGAATTAAAAGCTAATTTAAAATACATTCAGACATTTTGGAGGGAGGTTAATTAAGCATAATCGGTTCATTTGGAAATGTCATTTTTAGAAACTATGAGCCAAAAAGAAATTTCAAAATTTGCGAAACTTTGAAAATTTTTTCTGGCTTTTGAAGATTTCACAAAGAATCATCGAAATTCGAAAAAAAATCTGATGCTTTTGGGTGCTAAATACCGTATTTTCTCTAATAGAAGCCCACCCAATACGTGCACTGTGAGCTCAATTATCTCGCTTCCTATTAGAGATGTCAAAATTTTGT</canonical>
            <polymorphic>TTCTTCTTTTTCTTCTCCATCCATTTAATCTACTCTGGATAATCCTTGATTGTCTGCATTTTTGTGGAAAGATGCACCATAATATAATATAATTGGGGGCTTTCTCCTTTTTCTCTTCCTCTTTTTTCCCCAGTCAACTACAAAATAATGTGCACTTCTCTCCCTTTTTCCTTCTTAAGTCATATTTTAATAGTCATATTTTAATAAAGATTTTTGAAATTCCATACCAATCACGGAAATTGAGAGATGGCGAATATGTAAATTCTGGTAAACTAAAACCCCCAAAAATCTTTGAAATCCTGGATTCAGTCTGTGTAATCTGACTTTAGGATTTGCAATGCAAAATCCGAAACACAAACTAGAAAAGTGGCGTGGTATCTGGAATTTCAAAAATAGGTCCACGTTTTTGATATTCTGATGTCTGATTTCAAAAGAAAGTGTGTAGTTTAAAGTTCACAGACTTTTGAAACAAAAAACATCTGGAATTTTTTCCGGGCTTKATATTTTCTGAAATTGAGTTTGAAGCATTTTATGAGTTGATCTAAACAATTTTCAAATTCGAACCCCAAGGGTAATTTTTGGTCTTTTTGAGAAAAATCTAAAATTTATATCTTTCAAAGTGGTTGGTTCTTTTTCGGATACTTTCCAACTTTACCACAATCAACTTTGTTCCCAAAAATAGATTCAGGAAGTTCCATTTTCGAATTAAAAGCTAATTTAAAATACATTCAGACATTTTGGAGGGAGGTTAATTAAGCATAATCGGTTCATTTGGAAATGTCATTTTTAGAAACTATGAGCCAAAAAGAAATTTCAAAATTTGCGAAACTTTGAAAATTTTTTCTGGCTTTTGAAGATTTCACAAAGAATCATCGAAATTCGAAAAAAAATCTGATGCTTTTGGGTGCTAAATACCGTATTTTCTCTAATAGAAGCCCACCCAATACGTGCACTGTGAGCTCAATTATCTCGCTTCCTATTAGAGATGTCAAAATTTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTGGAATTTCAAAAATAGGTC</pcr_primer_p1>
		<pcr_primer_p2>CCAACCACTTTGAAAGATATAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATCTGGAATTTCAAAAATAGGTCCACGTTTTTGATATTCTGATGTCTGATTTCAAAAGAAAGTGTGTAGTTTAAAGTTCACAGACTTTTGAAACAAAAAACATCTGGAATTTTTTCCGGGCTTGATATTTTCTGAAATTGAGTTTGAAGCATTTTATGAGTTGATCTAAACAATTTTCAAATTCGAACCCCAAGGGTAATTTTTGGTCTTTTTGAGAAAAATCTAAAATTTATATCTTTCAAAGTGGTTGG</canonical_amplicon>
		<polymorphic_amplicon>ATCTGGAATTTCAAAAATAGGTCCACGTTTTTGATATTCTGATGTCTGATTTCAAAAGAAAGTGTGTAGTTTAAAGTTCACAGACTTTTGAAACAAAAAACATCTGGAATTTTTTCCGGGCTTKATATTTTCTGAAATTGAGTTTGAAGCATTTTATGAGTTGATCTAAACAATTTTCAAATTCGAACCCCAAGGGTAATTTTTGGTCTTTTTGAGAAAAATCTAAAATTTATATCTTTCAAAGTGGTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5211</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>305390</contig_pos>
        <strand>+</strand>
        <context>TAATTTTTAA[C/T]AATATGTTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACTCGAGCAAATCTGAATTCACAAAAAATTTCGTTTTACTAATTTTTAA</left_flank>
        <right_flank>AATATGTTCAAGTTTGAATATATGTTTTCAGTTTCCCCATAATTAAAAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGCGCTTGTCCTTCTTCTTCGCCAGGCCTTTTTCCTTCATTCATTTTCTTCTCTCAGGATCACTTGTATCCATTTTTTCTTTTTGTTTTTCTATGTGCAACCACCTCCTTTTCCTCTTTTTTCCGTTATTTCAGTCTTCTGTACCTTTTTTTTCTTTTTTTTTATGTTCTTTTGTTCTTCATCCACTCGGAAACTAATCAAATTTAAGATTCTTCCGAAGAAAAGAACTTTTGTGTTTTGTTGGAGTTTAGTAGATTCCGGAAGAATTTTTTTTGGAGAAAAAGTTTCAAAAAAAATTCTGACTGAAGCTCTTACTTCCTTTCCAATTTCTCCATAATTAATTAAAAAAATACAAAATATGATTTTTTCAGATTTTCGCGAATTTTTGAATATTTTATTTTTTACTTTTCTCATTTTTTAATTTAAATATAAACTGTATTCTTTGAAACTCGAGCAAATCTGAATTCACAAAAAATTTCGTTTTACTAATTTTTAACAATATGTTCAAGTTTGAATATATGTTTTCAGTTTCCCCATAATTAAAAAAGTAGAAACTATGAATTTGGATTTTAAAACAATTTAAAAACTTGGATGCTTCGATTTTCAAAACATTCCAATTTAAATCTTATCACTGAAAATTGATTATTTAAAAACTCGAAATTTTGAAATTGAAAAAATTTGAAAAGTCGAAATTGAGACTATGAATTCAAAACAACAAACTATGAATTTAGGTTTTCGCGAAGTTTTGAAATGCCGATGTTTCAATTTCCAAAATTTCAAATTTTAATCTTTTCCCTGAAAATTGTCATCAGACAAATTTTTGAATCTGATTCTGAAATTTTCTAAATATTTGCATTTCTTTTTTTTCTGCAAATTTCTCGACAATATAGTTTTTTACAAACTCTGCAAAACGGAATTTTTTAAAAATTATAGGAATTGAGATAATGGAGATCAAAGTAGAAGTGTAGAAAGTCCTTCTATTAGAGTGTTTACGGGA</canonical>
            <polymorphic>AAATGCGCTTGTCCTTCTTCTTCGCCAGGCCTTTTTCCTTCATTCATTTTCTTCTCTCAGGATCACTTGTATCCATTTTTTCTTTTTGTTTTTCTATGTGCAACCACCTCCTTTTCCTCTTTTTTCCGTTATTTCAGTCTTCTGTACCTTTTTTTTCTTTTTTTTTATGTTCTTTTGTTCTTCATCCACTCGGAAACTAATCAAATTTAAGATTCTTCCGAAGAAAAGAACTTTTGTGTTTTGTTGGAGTTTAGTAGATTCCGGAAGAATTTTTTTTGGAGAAAAAGTTTCAAAAAAAATTCTGACTGAAGCTCTTACTTCCTTTCCAATTTCTCCATAATTAATTAAAAAAATACAAAATATGATTTTTTCAGATTTTCGCGAATTTTTGAATATTTTATTTTTTACTTTTCTCATTTTTTAATTTAAATATAAACTGTATTCTTTGAAACTCGAGCAAATCTGAATTCACAAAAAATTTCGTTTTACTAATTTTTAAYAATATGTTCAAGTTTGAATATATGTTTTCAGTTTCCCCATAATTAAAAAAGTAGAAACTATGAATTTGGATTTTAAAACAATTTAAAAACTTGGATGCTTCGATTTTCAAAACATTCCAATTTAAATCTTATCACTGAAAATTGATTATTTAAAAACTCGAAATTTTGAAATTGAAAAAATTTGAAAAGTCGAAATTGAGACTATGAATTCAAAACAACAAACTATGAATTTAGGTTTTCGCGAAGTTTTGAAATGCCGATGTTTCAATTTCCAAAATTTCAAATTTTAATCTTTTCCCTGAAAATTGTCATCAGACAAATTTTTGAATCTGATTCTGAAATTTTCTAAATATTTGCATTTCTTTTTTTTCTGCAAATTTCTCGACAATATAGTTTTTTACAAACTCTGCAAAACGGAATTTTTTAAAAATTATAGGAATTGAGATAATGGAGATCAAAGTAGAAGTGTAGAAAGTCCTTCTATTAGAGTGTTTACGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTTACTTCCTTTCCAATTTCT</pcr_primer_p1>
		<pcr_primer_p2>TCCAAATTCATAGTTTCTACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>CTCTTACTTCCTTTCCAATTTCTCCATAATTAATTAAAAAAATACAAAATATGATTTTTTCAGATTTTCGCGAATTTTTGAATATTTTATTTTTTACTTTTCTCATTTTTTAATTTAAATATAAACTGTATTCTTTGAAACTCGAGCAAATCTGAATTCACAAAAAATTTCGTTTTACTAATTTTTAACAATATGTTCAAGTTTGAATATATGTTTTCAGTTTCCCCATAATTAAAAAAGTAGAAACTATGAATTTGGA</canonical_amplicon>
		<polymorphic_amplicon>CTCTTACTTCCTTTCCAATTTCTCCATAATTAATTAAAAAAATACAAAATATGATTTTTTCAGATTTTCGCGAATTTTTGAATATTTTATTTTTTACTTTTCTCATTTTTTAATTTAAATATAAACTGTATTCTTTGAAACTCGAGCAAATCTGAATTCACAAAAAATTTCGTTTTACTAATTTTTAAYAATATGTTCAAGTTTGAATATATGTTTTCAGTTTCCCCATAATTAAAAAAGTAGAAACTATGAATTTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5212</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>312408</contig_pos>
        <strand>+</strand>
        <context>TTGTGTTAAT[C/T]GGTTCCTACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGCATATTCGACTTCCTTCCTTCCTCTTCCCCCCAAAATTGTGTTAAT</left_flank>
        <right_flank>GGTTCCTACTTACGTCATGTTTAGATGATTCTCACTGTTTTTAGTTTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAATTGATTTTCCAGAAAGAGAAAAAAAGCAAAATACTGTTAAAAATAAATAGACAATAATTATTAACAAAATTTTGGGCATAGTAATCTACAGTAATCAAATACGCATGCATTTCTGAAAAAAATTAACTTGGGTATTTAAAGAACAGTTTCTGGAGTACTGTGAAGTTGAATTACTGCATTTCCTATGATAGAAGCCCGCCCAAACCATCAACTTTGAGCTCAATTATCTCGGTTCCTATGAGAGATGTAAAACATCAGACAATTGATAAAATGTAGGCAATACTTTGATAAAAACTTTGTCAATTGACAGATTTTTGTTATCTTTTATAGAAATTGAGATAACTGAGCTCAAAGTGTAAGTATAGGGTAACCTTCTATGTTTACAGTATATGCGTTTCTGGATTACTGTAAAGTTTGAACATCTCAATACCTTCTTACCTGATTGAAAGCATATTCGACTTCCTTCCTTCCTCTTCCCCCCAAAATTGTGTTAATTGGTTCCTACTTACGTCATGTTTAGATGATTCTCACTGTTTTTAGTTTTCATCATAAAAACAAATTATGAATATCCCTGGAGAAAATAGAAGAGATCCTCAAAAATAGAGATAATTAGGTCATAACCGCCTCCACATGATTCCCGTTATCATGTGGGAAAAAGGAGATATTGTTTTTATGAAACTAGAAATTTCTTTTATCAGGAGAATTGAGAGAAATTCCTAGACTTTTTGTTATCATTGAGTGATTCTGAGTATGTTCTAATTTTGGAAATAGACTCCATCTTTTCAGATTCACTGTCTTGCTTTTGTTTAGAAACTTCCAGTTGTTTCTTTTTTCTGAAAATCGGGGGGTTTCTGTTATTATCCATGTTCTTATCCCCCAATGTGATGGTTTCCCAGTTCTCTGATGATTTCACTTTTTTCGTATTTTTTGAAAACCGTTTGGTATTTTATAATATCCGAAAGTTGTCTTTATTGGAACGTTTTTTTCTCCGAATGT</canonical>
            <polymorphic>TTAATTGATTTTCCAGAAAGAGAAAAAAAGCAAAATACTGTTAAAAATAAATAGACAATAATTATTAACAAAATTTTGGGCATAGTAATCTACAGTAATCAAATACGCATGCATTTCTGAAAAAAATTAACTTGGGTATTTAAAGAACAGTTTCTGGAGTACTGTGAAGTTGAATTACTGCATTTCCTATGATAGAAGCCCGCCCAAACCATCAACTTTGAGCTCAATTATCTCGGTTCCTATGAGAGATGTAAAACATCAGACAATTGATAAAATGTAGGCAATACTTTGATAAAAACTTTGTCAATTGACAGATTTTTGTTATCTTTTATAGAAATTGAGATAACTGAGCTCAAAGTGTAAGTATAGGGTAACCTTCTATGTTTACAGTATATGCGTTTCTGGATTACTGTAAAGTTTGAACATCTCAATACCTTCTTACCTGATTGAAAGCATATTCGACTTCCTTCCTTCCTCTTCCCCCCAAAATTGTGTTAATYGGTTCCTACTTACGTCATGTTTAGATGATTCTCACTGTTTTTAGTTTTCATCATAAAAACAAATTATGAATATCCCTGGAGAAAATAGAAGAGATCCTCAAAAATAGAGATAATTAGGTCATAACCGCCTCCACATGATTCCCGTTATCATGTGGGAAAAAGGAGATATTGTTTTTATGAAACTAGAAATTTCTTTTATCAGGAGAATTGAGAGAAATTCCTAGACTTTTTGTTATCATTGAGTGATTCTGAGTATGTTCTAATTTTGGAAATAGACTCCATCTTTTCAGATTCACTGTCTTGCTTTTGTTTAGAAACTTCCAGTTGTTTCTTTTTTCTGAAAATCGGGGGGTTTCTGTTATTATCCATGTTCTTATCCCCCAATGTGATGGTTTCCCAGTTCTCTGATGATTTCACTTTTTTCGTATTTTTTGAAAACCGTTTGGTATTTTATAATATCCGAAAGTTGTCTTTATTGGAACGTTTTTTTCTCCGAATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>239 152 76 65 57 53 53 50 48 46 41 39 30 18 12 10 9 2</canonical_bands>
                <polymorphic_bands>239 152 76 74 57 53 53 50 48 46 41 39 30 18 12 10 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGAACATCTCAATACCTTCTT</pcr_primer_p1>
		<pcr_primer_p2>CTCCTTTTTCCCACATGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTGAACATCTCAATACCTTCTTACCTGATTGAAAGCATATTCGACTTCCTTCCTTCCTCTTCCCCCCAAAATTGTGTTAATTGGTTCCTACTTACGTCATGTTTAGATGATTCTCACTGTTTTTAGTTTTCATCATAAAAACAAATTATGAATATCCCTGGAGAAAATAGAAGAGATCCTCAAAAATAGAGATAATTAGGTCATAACCGCCTCCACATGATTCCCGTTATCATGTGGGAAAAAGGAG</canonical_amplicon>
		<polymorphic_amplicon>TTTGAACATCTCAATACCTTCTTACCTGATTGAAAGCATATTCGACTTCCTTCCTTCCTCTTCCCCCCAAAATTGTGTTAATYGGTTCCTACTTACGTCATGTTTAGATGATTCTCACTGTTTTTAGTTTTCATCATAAAAACAAATTATGAATATCCCTGGAGAAAATAGAAGAGATCCTCAAAAATAGAGATAATTAGGTCATAACCGCCTCCACATGATTCCCGTTATCATGTGGGAAAAAGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5213</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>312480</contig_pos>
        <strand>+</strand>
        <context>AATTATGAAT[A/C]TCCCTGGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAGATGATTCTCACTGTTTTTAGTTTTCATCATAAAAACAAATTATGAAT</left_flank>
        <right_flank>TCCCTGGAGAAAATAGAAGAGATCCTCAAAAATAGAGATAATTAGGTCAT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTGGGCATAGTAATCTACAGTAATCAAATACGCATGCATTTCTGAAAAAAATTAACTTGGGTATTTAAAGAACAGTTTCTGGAGTACTGTGAAGTTGAATTACTGCATTTCCTATGATAGAAGCCCGCCCAAACCATCAACTTTGAGCTCAATTATCTCGGTTCCTATGAGAGATGTAAAACATCAGACAATTGATAAAATGTAGGCAATACTTTGATAAAAACTTTGTCAATTGACAGATTTTTGTTATCTTTTATAGAAATTGAGATAACTGAGCTCAAAGTGTAAGTATAGGGTAACCTTCTATGTTTACAGTATATGCGTTTCTGGATTACTGTAAAGTTTGAACATCTCAATACCTTCTTACCTGATTGAAAGCATATTCGACTTCCTTCCTTCCTCTTCCCCCCAAAATTGTGTTAATTGGTTCCTACTTACGTCATGTTTAGATGATTCTCACTGTTTTTAGTTTTCATCATAAAAACAAATTATGAATATCCCTGGAGAAAATAGAAGAGATCCTCAAAAATAGAGATAATTAGGTCATAACCGCCTCCACATGATTCCCGTTATCATGTGGGAAAAAGGAGATATTGTTTTTATGAAACTAGAAATTTCTTTTATCAGGAGAATTGAGAGAAATTCCTAGACTTTTTGTTATCATTGAGTGATTCTGAGTATGTTCTAATTTTGGAAATAGACTCCATCTTTTCAGATTCACTGTCTTGCTTTTGTTTAGAAACTTCCAGTTGTTTCTTTTTTCTGAAAATCGGGGGGTTTCTGTTATTATCCATGTTCTTATCCCCCAATGTGATGGTTTCCCAGTTCTCTGATGATTTCACTTTTTTCGTATTTTTTGAAAACCGTTTGGTATTTTATAATATCCGAAAGTTGTCTTTATTGGAACGTTTTTTTCTCCGAATGTTTTTTGATTCTTGGCACTTGAATTTCTAATAACCAGACTTCATAAAACCATCAAAAGCAACTTCCCGGAGGA</canonical>
            <polymorphic>ATTTTGGGCATAGTAATCTACAGTAATCAAATACGCATGCATTTCTGAAAAAAATTAACTTGGGTATTTAAAGAACAGTTTCTGGAGTACTGTGAAGTTGAATTACTGCATTTCCTATGATAGAAGCCCGCCCAAACCATCAACTTTGAGCTCAATTATCTCGGTTCCTATGAGAGATGTAAAACATCAGACAATTGATAAAATGTAGGCAATACTTTGATAAAAACTTTGTCAATTGACAGATTTTTGTTATCTTTTATAGAAATTGAGATAACTGAGCTCAAAGTGTAAGTATAGGGTAACCTTCTATGTTTACAGTATATGCGTTTCTGGATTACTGTAAAGTTTGAACATCTCAATACCTTCTTACCTGATTGAAAGCATATTCGACTTCCTTCCTTCCTCTTCCCCCCAAAATTGTGTTAATTGGTTCCTACTTACGTCATGTTTAGATGATTCTCACTGTTTTTAGTTTTCATCATAAAAACAAATTATGAATMTCCCTGGAGAAAATAGAAGAGATCCTCAAAAATAGAGATAATTAGGTCATAACCGCCTCCACATGATTCCCGTTATCATGTGGGAAAAAGGAGATATTGTTTTTATGAAACTAGAAATTTCTTTTATCAGGAGAATTGAGAGAAATTCCTAGACTTTTTGTTATCATTGAGTGATTCTGAGTATGTTCTAATTTTGGAAATAGACTCCATCTTTTCAGATTCACTGTCTTGCTTTTGTTTAGAAACTTCCAGTTGTTTCTTTTTTCTGAAAATCGGGGGGTTTCTGTTATTATCCATGTTCTTATCCCCCAATGTGATGGTTTCCCAGTTCTCTGATGATTTCACTTTTTTCGTATTTTTTGAAAACCGTTTGGTATTTTATAATATCCGAAAGTTGTCTTTATTGGAACGTTTTTTTCTCCGAATGTTTTTTGATTCTTGGCACTTGAATTTCTAATAACCAGACTTCATAAAACCATCAAAAGCAACTTCCCGGAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTCCTACTTACGTCATGTTTA</pcr_primer_p1>
		<pcr_primer_p2>CAGAATCACTCAATGATAACAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGTTCCTACTTACGTCATGTTTAGATGATTCTCACTGTTTTTAGTTTTCATCATAAAAACAAATTATGAATATCCCTGGAGAAAATAGAAGAGATCCTCAAAAATAGAGATAATTAGGTCATAACCGCCTCCACATGATTCCCGTTATCATGTGGGAAAAAGGAGATATTGTTTTTATGAAACTAGAAATTTCTTTTATCAGGAGAATTGAGAGAAATTCCTAGACTTTTTGTTATCATTGAGTGATTCTG</canonical_amplicon>
		<polymorphic_amplicon>GGTTCCTACTTACGTCATGTTTAGATGATTCTCACTGTTTTTAGTTTTCATCATAAAAACAAATTATGAATMTCCCTGGAGAAAATAGAAGAGATCCTCAAAAATAGAGATAATTAGGTCATAACCGCCTCCACATGATTCCCGTTATCATGTGGGAAAAAGGAGATATTGTTTTTATGAAACTAGAAATTTCTTTTATCAGGAGAATTGAGAGAAATTCCTAGACTTTTTGTTATCATTGAGTGATTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5214</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>312810</contig_pos>
        <strand>+</strand>
        <context>GTTTCCCAGT[G/T]CTCTGATGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTTCTGTTATTATCCATGTTCTTATCCCCCAATGTGATGGTTTCCCAGT</left_flank>
        <right_flank>CTCTGATGATTTCACTTTTTTCGTATTTTTTGAAAACCGTTTGGTATTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGATTACTGTAAAGTTTGAACATCTCAATACCTTCTTACCTGATTGAAAGCATATTCGACTTCCTTCCTTCCTCTTCCCCCCAAAATTGTGTTAATTGGTTCCTACTTACGTCATGTTTAGATGATTCTCACTGTTTTTAGTTTTCATCATAAAAACAAATTATGAATATCCCTGGAGAAAATAGAAGAGATCCTCAAAAATAGAGATAATTAGGTCATAACCGCCTCCACATGATTCCCGTTATCATGTGGGAAAAAGGAGATATTGTTTTTATGAAACTAGAAATTTCTTTTATCAGGAGAATTGAGAGAAATTCCTAGACTTTTTGTTATCATTGAGTGATTCTGAGTATGTTCTAATTTTGGAAATAGACTCCATCTTTTCAGATTCACTGTCTTGCTTTTGTTTAGAAACTTCCAGTTGTTTCTTTTTTCTGAAAATCGGGGGGTTTCTGTTATTATCCATGTTCTTATCCCCCAATGTGATGGTTTCCCAGTTCTCTGATGATTTCACTTTTTTCGTATTTTTTGAAAACCGTTTGGTATTTTATAATATCCGAAAGTTGTCTTTATTGGAACGTTTTTTTCTCCGAATGTTTTTTGATTCTTGGCACTTGAATTTCTAATAACCAGACTTCATAAAACCATCAAAAGCAACTTCCCGGAGGAGTCTTAAAATTTTTTTCGAAAAAGAGAATAAAGTTGAAACATCGGAAATTGAAAGTTCGAAATCTTGAGGAACCGATGAAATCAATAAATTTCAATATATTTTAAAATTATCGAATTTAATATTTGGGGAATTCTAAATTTATAGAAACTTCAAATCCCACGAATCAACCTATCCAATGAGCCTCAGATAGTAAATTTAAAGATTTTAATAATCTACAAAAATTGCTAGGGATATTCGGAATGTTTTTTTTTGGAATTTTTGAATGTCCAAAATTCCCGATTTGGAAATTTTAAAAATTTCGGAATTTCGGAATATTCCGATTTTGAAAA</canonical>
            <polymorphic>TGGATTACTGTAAAGTTTGAACATCTCAATACCTTCTTACCTGATTGAAAGCATATTCGACTTCCTTCCTTCCTCTTCCCCCCAAAATTGTGTTAATTGGTTCCTACTTACGTCATGTTTAGATGATTCTCACTGTTTTTAGTTTTCATCATAAAAACAAATTATGAATATCCCTGGAGAAAATAGAAGAGATCCTCAAAAATAGAGATAATTAGGTCATAACCGCCTCCACATGATTCCCGTTATCATGTGGGAAAAAGGAGATATTGTTTTTATGAAACTAGAAATTTCTTTTATCAGGAGAATTGAGAGAAATTCCTAGACTTTTTGTTATCATTGAGTGATTCTGAGTATGTTCTAATTTTGGAAATAGACTCCATCTTTTCAGATTCACTGTCTTGCTTTTGTTTAGAAACTTCCAGTTGTTTCTTTTTTCTGAAAATCGGGGGGTTTCTGTTATTATCCATGTTCTTATCCCCCAATGTGATGGTTTCCCAGTKCTCTGATGATTTCACTTTTTTCGTATTTTTTGAAAACCGTTTGGTATTTTATAATATCCGAAAGTTGTCTTTATTGGAACGTTTTTTTCTCCGAATGTTTTTTGATTCTTGGCACTTGAATTTCTAATAACCAGACTTCATAAAACCATCAAAAGCAACTTCCCGGAGGAGTCTTAAAATTTTTTTCGAAAAAGAGAATAAAGTTGAAACATCGGAAATTGAAAGTTCGAAATCTTGAGGAACCGATGAAATCAATAAATTTCAATATATTTTAAAATTATCGAATTTAATATTTGGGGAATTCTAAATTTATAGAAACTTCAAATCCCACGAATCAACCTATCCAATGAGCCTCAGATAGTAAATTTAAAGATTTTAATAATCTACAAAAATTGCTAGGGATATTCGGAATGTTTTTTTTTGGAATTTTTGAATGTCCAAAATTCCCGATTTGGAAATTTTAAAAATTTCGGAATTTCGGAATATTCCGATTTTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGTTTAGAAACTTCCAGTTG</pcr_primer_p1>
		<pcr_primer_p2>GATGGTTTTATGAAGTCTGGTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTTGTTTAGAAACTTCCAGTTGTTTCTTTTTTCTGAAAATCGGGGGGTTTCTGTTATTATCCATGTTCTTATCCCCCAATGTGATGGTTTCCCAGTTCTCTGATGATTTCACTTTTTTCGTATTTTTTGAAAACCGTTTGGTATTTTATAATATCCGAAAGTTGTCTTTATTGGAACGTTTTTTTCTCCGAATGTTTTTTGATTCTTGGCACTTGAATTTCTAATAACCAGACTTCATAAAACCATC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGTTTAGAAACTTCCAGTTGTTTCTTTTTTCTGAAAATCGGGGGGTTTCTGTTATTATCCATGTTCTTATCCCCCAATGTGATGGTTTCCCAGTKCTCTGATGATTTCACTTTTTTCGTATTTTTTGAAAACCGTTTGGTATTTTATAATATCCGAAAGTTGTCTTTATTGGAACGTTTTTTTCTCCGAATGTTTTTTGATTCTTGGCACTTGAATTTCTAATAACCAGACTTCATAAAACCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5215</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>312990</contig_pos>
        <strand>+</strand>
        <context>AGTCTTAAAA[C/T]TTTTTTCGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCAGACTTCATAAAACCATCAAAAGCAACTTCCCGGAGGAGTCTTAAAA</left_flank>
        <right_flank>TTTTTTCGAAAAAGAGAATAAAGTTGAAACATCGGAAATTGAAAGTTCGA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATAGAAGAGATCCTCAAAAATAGAGATAATTAGGTCATAACCGCCTCCACATGATTCCCGTTATCATGTGGGAAAAAGGAGATATTGTTTTTATGAAACTAGAAATTTCTTTTATCAGGAGAATTGAGAGAAATTCCTAGACTTTTTGTTATCATTGAGTGATTCTGAGTATGTTCTAATTTTGGAAATAGACTCCATCTTTTCAGATTCACTGTCTTGCTTTTGTTTAGAAACTTCCAGTTGTTTCTTTTTTCTGAAAATCGGGGGGTTTCTGTTATTATCCATGTTCTTATCCCCCAATGTGATGGTTTCCCAGTTCTCTGATGATTTCACTTTTTTCGTATTTTTTGAAAACCGTTTGGTATTTTATAATATCCGAAAGTTGTCTTTATTGGAACGTTTTTTTCTCCGAATGTTTTTTGATTCTTGGCACTTGAATTTCTAATAACCAGACTTCATAAAACCATCAAAAGCAACTTCCCGGAGGAGTCTTAAAATTTTTTTCGAAAAAGAGAATAAAGTTGAAACATCGGAAATTGAAAGTTCGAAATCTTGAGGAACCGATGAAATCAATAAATTTCAATATATTTTAAAATTATCGAATTTAATATTTGGGGAATTCTAAATTTATAGAAACTTCAAATCCCACGAATCAACCTATCCAATGAGCCTCAGATAGTAAATTTAAAGATTTTAATAATCTACAAAAATTGCTAGGGATATTCGGAATGTTTTTTTTTGGAATTTTTGAATGTCCAAAATTCCCGATTTGGAAATTTTAAAAATTTCGGAATTTCGGAATATTCCGATTTTGAAAATTTGGAATTTTGAAATAATTCGATGTTCTAAATTATAATTTTTGATTTTCGAAGATTTTGATTTTTGAAAATCCCGAAATTTCCAATTACAAAAACACTAAAAATTAGTGAAAAATTGACAAACAGATTTCGAAAACGCGGAAAAAATGTTTACAGTAATTTCACTCGAGACTCGCAAGG</canonical>
            <polymorphic>AAATAGAAGAGATCCTCAAAAATAGAGATAATTAGGTCATAACCGCCTCCACATGATTCCCGTTATCATGTGGGAAAAAGGAGATATTGTTTTTATGAAACTAGAAATTTCTTTTATCAGGAGAATTGAGAGAAATTCCTAGACTTTTTGTTATCATTGAGTGATTCTGAGTATGTTCTAATTTTGGAAATAGACTCCATCTTTTCAGATTCACTGTCTTGCTTTTGTTTAGAAACTTCCAGTTGTTTCTTTTTTCTGAAAATCGGGGGGTTTCTGTTATTATCCATGTTCTTATCCCCCAATGTGATGGTTTCCCAGTTCTCTGATGATTTCACTTTTTTCGTATTTTTTGAAAACCGTTTGGTATTTTATAATATCCGAAAGTTGTCTTTATTGGAACGTTTTTTTCTCCGAATGTTTTTTGATTCTTGGCACTTGAATTTCTAATAACCAGACTTCATAAAACCATCAAAAGCAACTTCCCGGAGGAGTCTTAAAAYTTTTTTCGAAAAAGAGAATAAAGTTGAAACATCGGAAATTGAAAGTTCGAAATCTTGAGGAACCGATGAAATCAATAAATTTCAATATATTTTAAAATTATCGAATTTAATATTTGGGGAATTCTAAATTTATAGAAACTTCAAATCCCACGAATCAACCTATCCAATGAGCCTCAGATAGTAAATTTAAAGATTTTAATAATCTACAAAAATTGCTAGGGATATTCGGAATGTTTTTTTTTGGAATTTTTGAATGTCCAAAATTCCCGATTTGGAAATTTTAAAAATTTCGGAATTTCGGAATATTCCGATTTTGAAAATTTGGAATTTTGAAATAATTCGATGTTCTAAATTATAATTTTTGATTTTCGAAGATTTTGATTTTTGAAAATCCCGAAATTTCCAATTACAAAAACACTAAAAATTAGTGAAAAATTGACAAACAGATTTCGAAAACGCGGAAAAAATGTTTACAGTAATTTCACTCGAGACTCGCAAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>305 105 103 80 72 61 59 57 28 26 25 17 16 15 9 8 7 7</canonical_bands>
                <polymorphic_bands>305 139 105 103 72 61 57 28 26 25 17 16 15 9 8 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>259 76 59 57 46 44 41 41 39 34 29 27 25 23 18 18 18 17 16 15 14 11 11 10 9 8 8 7 7 7 6</canonical_bands>
                <polymorphic_bands>259 98 76 57 46 44 41 41 34 29 27 25 23 18 18 18 17 16 15 14 11 11 10 9 8 8 7 7 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCACTTGAATTTCTAATAACCAG</pcr_primer_p1>
		<pcr_primer_p2>TATCTGAGGCTCATTGGATAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCACTTGAATTTCTAATAACCAGACTTCATAAAACCATCAAAAGCAACTTCCCGGAGGAGTCTTAAAATTTTTTTCGAAAAAGAGAATAAAGTTGAAACATCGGAAATTGAAAGTTCGAAATCTTGAGGAACCGATGAAATCAATAAATTTCAATATATTTTAAAATTATCGAATTTAATATTTGGGGAATTCTAAATTTATAGAAACTTCAAATCCCACGAATCAACCTATCCAATGAGCCTCAGATA</canonical_amplicon>
		<polymorphic_amplicon>GCACTTGAATTTCTAATAACCAGACTTCATAAAACCATCAAAAGCAACTTCCCGGAGGAGTCTTAAAAYTTTTTTCGAAAAAGAGAATAAAGTTGAAACATCGGAAATTGAAAGTTCGAAATCTTGAGGAACCGATGAAATCAATAAATTTCAATATATTTTAAAATTATCGAATTTAATATTTGGGGAATTCTAAATTTATAGAAACTTCAAATCCCACGAATCAACCTATCCAATGAGCCTCAGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5216</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>339613</contig_pos>
        <strand>+</strand>
        <context>ACGACGTCAG[C/T]TCGTTGTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGGCTGGTCGGTGGGGTCGATGTCTTCGGGTCGATGACGACGACGTCAG</left_flank>
        <right_flank>TCGTTGTTCTTCTTCTTCTTCTTCCAAAAACTTTTTGACTTCTTGACACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTGAAGCTCGGAATTTTAAAAGGCATGGCTTTCAATAGTTGTAGTACATCTGTTCGTTTTGATTGCTCATCTTGATACCACATTATCCAGAACACAGTATAATTCCTTATATTGCTCCCCTTCAAAAAGACCTTGGATACTCCGAGACCCAACCCAAAAACCACTTACCCATTCCATTGTCCCCCAAAAAAACTGTTCCCCTCTTCTCAATTTCCGTTGTCCTCCTCCCCTCGTTTTTCCTCTCAATTTGCTGCTGTTCAGAGGATTTTTGACGGTCAGTTCTTCTCAAGGAGTCGCAATTTCGAAAATTTAATAATGGGTGGGATCTGATTCTCTATGAGAAGAAGAGGTGTGTGTTTCCATAAATAATAGTATAAGTATGTACATATGGCATGACCTTCTCGAAAAATGCTTCTCCGTCCCTTCTCCGAATTATAATTGATGCTGTGGCTGGTCGGTGGGGTCGATGTCTTCGGGTCGATGACGACGACGTCAGTTCGTTGTTCTTCTTCTTCTTCTTCCAAAAACTTTTTGACTTCTTGACACAAAGCAACTTGTTCTTCTACTCATCGATTTTTAAGTGGCTTGTGGATTAGTCATAAGTGTGGGCTATTTGTGTTTTAGGAATTCCCGAATGACCGTTTTCCTCCTTATTATGGTTTCCATATCTTCCTCCCGTCCCTTCAGTTCTTTTTCTTCTGTTCACTTCATTGTTTTCCATCACATTCAATTCAAATTGGCGTCGTCAGTGCCGCTGGTTTCGTTTCAAGAACACTTGTATGCGATTCATATCACATCCAGTCGGGGGATCTTTCCATAACCCTATCCGGGTATTCATTGGGAAAACGATGGAAAACAGTAACTTCTGCTTCTGCTTCTTCTTTTTCTTCATCTTCTTTTGGTCATGGTTCAGATTCTTGAGAAGGATCCTTCACTTTCTGACGGGGTTAGGATCTTTGACTTTCAGATAAAAGTTAGCTGTGTCAATTGTACAGAA</canonical>
            <polymorphic>TTTCTGAAGCTCGGAATTTTAAAAGGCATGGCTTTCAATAGTTGTAGTACATCTGTTCGTTTTGATTGCTCATCTTGATACCACATTATCCAGAACACAGTATAATTCCTTATATTGCTCCCCTTCAAAAAGACCTTGGATACTCCGAGACCCAACCCAAAAACCACTTACCCATTCCATTGTCCCCCAAAAAAACTGTTCCCCTCTTCTCAATTTCCGTTGTCCTCCTCCCCTCGTTTTTCCTCTCAATTTGCTGCTGTTCAGAGGATTTTTGACGGTCAGTTCTTCTCAAGGAGTCGCAATTTCGAAAATTTAATAATGGGTGGGATCTGATTCTCTATGAGAAGAAGAGGTGTGTGTTTCCATAAATAATAGTATAAGTATGTACATATGGCATGACCTTCTCGAAAAATGCTTCTCCGTCCCTTCTCCGAATTATAATTGATGCTGTGGCTGGTCGGTGGGGTCGATGTCTTCGGGTCGATGACGACGACGTCAGYTCGTTGTTCTTCTTCTTCTTCTTCCAAAAACTTTTTGACTTCTTGACACAAAGCAACTTGTTCTTCTACTCATCGATTTTTAAGTGGCTTGTGGATTAGTCATAAGTGTGGGCTATTTGTGTTTTAGGAATTCCCGAATGACCGTTTTCCTCCTTATTATGGTTTCCATATCTTCCTCCCGTCCCTTCAGTTCTTTTTCTTCTGTTCACTTCATTGTTTTCCATCACATTCAATTCAAATTGGCGTCGTCAGTGCCGCTGGTTTCGTTTCAAGAACACTTGTATGCGATTCATATCACATCCAGTCGGGGGATCTTTCCATAACCCTATCCGGGTATTCATTGGGAAAACGATGGAAAACAGTAACTTCTGCTTCTGCTTCTTCTTTTTCTTCATCTTCTTTTGGTCATGGTTCAGATTCTTGAGAAGGATCCTTCACTTTCTGACGGGGTTAGGATCTTTGACTTTCAGATAAAAGTTAGCTGTGTCAATTGTACAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATGAGAAGAAGAGGTGTGTGT</pcr_primer_p1>
		<pcr_primer_p2>CCACTTAAAAATCGATGAGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATGAGAAGAAGAGGTGTGTGTTTCCATAAATAATAGTATAAGTATGTACATATGGCATGACCTTCTCGAAAAATGCTTCTCCGTCCCTTCTCCGAATTATAATTGATGCTGTGGCTGGTCGGTGGGGTCGATGTCTTCGGGTCGATGACGACGACGTCAGTTCGTTGTTCTTCTTCTTCTTCTTCCAAAAACTTTTTGACTTCTTGACACAAAGCAACTTGTTCTTCTACTCATCGATTTTTAAGTGG</canonical_amplicon>
		<polymorphic_amplicon>CTATGAGAAGAAGAGGTGTGTGTTTCCATAAATAATAGTATAAGTATGTACATATGGCATGACCTTCTCGAAAAATGCTTCTCCGTCCCTTCTCCGAATTATAATTGATGCTGTGGCTGGTCGGTGGGGTCGATGTCTTCGGGTCGATGACGACGACGTCAGYTCGTTGTTCTTCTTCTTCTTCTTCCAAAAACTTTTTGACTTCTTGACACAAAGCAACTTGTTCTTCTACTCATCGATTTTTAAGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5217</snp_id>
        <super_contig>c002901207.Contig2</super_contig>
        <contig_pos>3100</contig_pos>
        <strand>+</strand>
        <context>CTTGAAATTC[C/T]ACAAGAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTTTCCTCCCAAAAATGCACATCTGCCCAATCGATGAACTTGAAATTC</left_flank>
        <right_flank>ACAAGAAAAAGATGATATACTGTATGAAGTGGATGAGCTTTTGAGCACAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACATTTTTGTCAATTGATAAAATATTACTGATAACATGATAAACATTTTATCAGTTTTCACTTTTTTGATATCTCGTACAGTTACCGAGATATAAGGGCTCAAAGTTGACGGTGGTTGCGGGGCCTGCTACTAATGTGTTTACGGTGGTGAGCTTTTGTAGTCTTTGTAGTCATTGTAGTTAAGCAATTTTGAAATTTTAATTTTTTCTGTAAGTTTTATTTTTTTCCCTTTACCTCTAACAATTTTTCTTGAAACGTTTTTTTGTAATTTTAATAAATCAATTAATTTTTGAAAATCTCTTTTTTTTCAGTTTTTTTCTATTTTTACGGGTTCTTGCCTGGTTTCTACCTTTTTTTTCTTTTTTTTTGTGGAAGTTCATTTAAACATATTCCAAACATTCAAAAAATTTCCTATCAATTGATATAATTTGCATAATTTTTTTCAGATTCTTTCCTCCCAAAAATGCACATCTGCCCAATCGATGAACTTGAAATTCCACAAGAAAAAGATGATATACTGTATGAAGTGGATGAGCTTTTGAGCACATTCCGGGTCAAGGACACTTATGAGGCATTTGAGAAACTTCAATTTGTGAGTTTTAATTAACTGAAAGTTTAGAAAAACTAGAGCTCTCAAATGATCCAAAAATCAAAGTTCTGGGTGGGAAATGAGAGGAGTTATAAGCCTTTTTCGATATATCGACTCTAGAAAATTCAATTTCGAACTTTTCGTATTGGTTTTTTGGGATTTTAATTAAGAAAATTTCGAGGTATCACATGATACTTTAACTAAAGCTCTAGGTTGAAAACAAACAAAGTAATAAAACGGTTTACAGGGGTTAGACGTCTTTCAGAGCCGCTGGCCGCGGCCGACCGCGACTTAGAATAATCATTTTTATACCAAAATGATCCTTGTGGCATGAGCTACAAAAATATATTAATAACTTTGCAGGATTCTAACTTTGAAGCTAGTTACAGTTCAGAAAATAAACGCTAAC</canonical>
            <polymorphic>TCACATTTTTGTCAATTGATAAAATATTACTGATAACATGATAAACATTTTATCAGTTTTCACTTTTTTGATATCTCGTACAGTTACCGAGATATAAGGGCTCAAAGTTGACGGTGGTTGCGGGGCCTGCTACTAATGTGTTTACGGTGGTGAGCTTTTGTAGTCTTTGTAGTCATTGTAGTTAAGCAATTTTGAAATTTTAATTTTTTCTGTAAGTTTTATTTTTTTCCCTTTACCTCTAACAATTTTTCTTGAAACGTTTTTTTGTAATTTTAATAAATCAATTAATTTTTGAAAATCTCTTTTTTTTCAGTTTTTTTCTATTTTTACGGGTTCTTGCCTGGTTTCTACCTTTTTTTTCTTTTTTTTTGTGGAAGTTCATTTAAACATATTCCAAACATTCAAAAAATTTCCTATCAATTGATATAATTTGCATAATTTTTTTCAGATTCTTTCCTCCCAAAAATGCACATCTGCCCAATCGATGAACTTGAAATTCYACAAGAAAAAGATGATATACTGTATGAAGTGGATGAGCTTTTGAGCACATTCCGGGTCAAGGACACTTATGAGGCATTTGAGAAACTTCAATTTGTGAGTTTTAATTAACTGAAAGTTTAGAAAAACTAGAGCTCTCAAATGATCCAAAAATCAAAGTTCTGGGTGGGAAATGAGAGGAGTTATAAGCCTTTTTCGATATATCGACTCTAGAAAATTCAATTTCGAACTTTTCGTATTGGTTTTTTGGGATTTTAATTAAGAAAATTTCGAGGTATCACATGATACTTTAACTAAAGCTCTAGGTTGAAAACAAACAAAGTAATAAAACGGTTTACAGGGGTTAGACGTCTTTCAGAGCCGCTGGCCGCGGCCGACCGCGACTTAGAATAATCATTTTTATACCAAAATGATCCTTGTGGCATGAGCTACAAAAATATATTAATAACTTTGCAGGATTCTAACTTTGAAGCTAGTTACAGTTCAGAAAATAAACGCTAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>221 141 112 97 81 69 59 54 32 31 30 24 18 16 9 3 3</canonical_bands>
                <polymorphic_bands>221 141 112 97 81 69 61 59 54 32 24 18 16 9 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACATATTCCAAACATTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGCTCTAGTTTTTCTAAACTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACATATTCCAAACATTCAAAAAATTTCCTATCAATTGATATAATTTGCATAATTTTTTTCAGATTCTTTCCTCCCAAAAATGCACATCTGCCCAATCGATGAACTTGAAATTCCACAAGAAAAAGATGATATACTGTATGAAGTGGATGAGCTTTTGAGCACATTCCGGGTCAAGGACACTTATGAGGCATTTGAGAAACTTCAATTTGTGAGTTTTAATTAACTGAAAGTTTAGAAAAACTAGAGCTC</canonical_amplicon>
		<polymorphic_amplicon>AACATATTCCAAACATTCAAAAAATTTCCTATCAATTGATATAATTTGCATAATTTTTTTCAGATTCTTTCCTCCCAAAAATGCACATCTGCCCAATCGATGAACTTGAAATTCYACAAGAAAAAGATGATATACTGTATGAAGTGGATGAGCTTTTGAGCACATTCCGGGTCAAGGACACTTATGAGGCATTTGAGAAACTTCAATTTGTGAGTTTTAATTAACTGAAAGTTTAGAAAAACTAGAGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5218</snp_id>
        <super_contig>c002901207.Contig2</super_contig>
        <contig_pos>3210</contig_pos>
        <strand>+</strand>
        <context>TTTTAATTAA[C/T]TGAAAGTTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGACACTTATGAGGCATTTGAGAAACTTCAATTTGTGAGTTTTAATTAA</left_flank>
        <right_flank>TGAAAGTTTAGAAAAACTAGAGCTCTCAAATGATCCAAAAATCAAAGTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGGTGGTTGCGGGGCCTGCTACTAATGTGTTTACGGTGGTGAGCTTTTGTAGTCTTTGTAGTCATTGTAGTTAAGCAATTTTGAAATTTTAATTTTTTCTGTAAGTTTTATTTTTTTCCCTTTACCTCTAACAATTTTTCTTGAAACGTTTTTTTGTAATTTTAATAAATCAATTAATTTTTGAAAATCTCTTTTTTTTCAGTTTTTTTCTATTTTTACGGGTTCTTGCCTGGTTTCTACCTTTTTTTTCTTTTTTTTTGTGGAAGTTCATTTAAACATATTCCAAACATTCAAAAAATTTCCTATCAATTGATATAATTTGCATAATTTTTTTCAGATTCTTTCCTCCCAAAAATGCACATCTGCCCAATCGATGAACTTGAAATTCCACAAGAAAAAGATGATATACTGTATGAAGTGGATGAGCTTTTGAGCACATTCCGGGTCAAGGACACTTATGAGGCATTTGAGAAACTTCAATTTGTGAGTTTTAATTAACTGAAAGTTTAGAAAAACTAGAGCTCTCAAATGATCCAAAAATCAAAGTTCTGGGTGGGAAATGAGAGGAGTTATAAGCCTTTTTCGATATATCGACTCTAGAAAATTCAATTTCGAACTTTTCGTATTGGTTTTTTGGGATTTTAATTAAGAAAATTTCGAGGTATCACATGATACTTTAACTAAAGCTCTAGGTTGAAAACAAACAAAGTAATAAAACGGTTTACAGGGGTTAGACGTCTTTCAGAGCCGCTGGCCGCGGCCGACCGCGACTTAGAATAATCATTTTTATACCAAAATGATCCTTGTGGCATGAGCTACAAAAATATATTAATAACTTTGCAGGATTCTAACTTTGAAGCTAGTTACAGTTCAGAAAATAAACGCTAACTTGAAAACGAAGGGAGTTTTGGTGAAACTTTAATTTTAGGGTTTCAAAGCCTCGGAACTACGGTCGACCGCTACCGAGGACAATGGTTTTTGTATCAGAATGACCCTTAT</canonical>
            <polymorphic>ACGGTGGTTGCGGGGCCTGCTACTAATGTGTTTACGGTGGTGAGCTTTTGTAGTCTTTGTAGTCATTGTAGTTAAGCAATTTTGAAATTTTAATTTTTTCTGTAAGTTTTATTTTTTTCCCTTTACCTCTAACAATTTTTCTTGAAACGTTTTTTTGTAATTTTAATAAATCAATTAATTTTTGAAAATCTCTTTTTTTTCAGTTTTTTTCTATTTTTACGGGTTCTTGCCTGGTTTCTACCTTTTTTTTCTTTTTTTTTGTGGAAGTTCATTTAAACATATTCCAAACATTCAAAAAATTTCCTATCAATTGATATAATTTGCATAATTTTTTTCAGATTCTTTCCTCCCAAAAATGCACATCTGCCCAATCGATGAACTTGAAATTCCACAAGAAAAAGATGATATACTGTATGAAGTGGATGAGCTTTTGAGCACATTCCGGGTCAAGGACACTTATGAGGCATTTGAGAAACTTCAATTTGTGAGTTTTAATTAAYTGAAAGTTTAGAAAAACTAGAGCTCTCAAATGATCCAAAAATCAAAGTTCTGGGTGGGAAATGAGAGGAGTTATAAGCCTTTTTCGATATATCGACTCTAGAAAATTCAATTTCGAACTTTTCGTATTGGTTTTTTGGGATTTTAATTAAGAAAATTTCGAGGTATCACATGATACTTTAACTAAAGCTCTAGGTTGAAAACAAACAAAGTAATAAAACGGTTTACAGGGGTTAGACGTCTTTCAGAGCCGCTGGCCGCGGCCGACCGCGACTTAGAATAATCATTTTTATACCAAAATGATCCTTGTGGCATGAGCTACAAAAATATATTAATAACTTTGCAGGATTCTAACTTTGAAGCTAGTTACAGTTCAGAAAATAAACGCTAACTTGAAAACGAAGGGAGTTTTGGTGAAACTTTAATTTTAGGGTTTCAAAGCCTCGGAACTACGGTCGACCGCTACCGAGGACAATGGTTTTTGTATCAGAATGACCCTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATTCTTTCCTCCCAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGGCTTATAACTCCTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGATTCTTTCCTCCCAAAAATGCACATCTGCCCAATCGATGAACTTGAAATTCCACAAGAAAAAGATGATATACTGTATGAAGTGGATGAGCTTTTGAGCACATTCCGGGTCAAGGACACTTATGAGGCATTTGAGAAACTTCAATTTGTGAGTTTTAATTAACTGAAAGTTTAGAAAAACTAGAGCTCTCAAATGATCCAAAAATCAAAGTTCTGGGTGGGAAATGAGAGGAGTTATAAGCCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>AGATTCTTTCCTCCCAAAAATGCACATCTGCCCAATCGATGAACTTGAAATTCCACAAGAAAAAGATGATATACTGTATGAAGTGGATGAGCTTTTGAGCACATTCCGGGTCAAGGACACTTATGAGGCATTTGAGAAACTTCAATTTGTGAGTTTTAATTAAYTGAAAGTTTAGAAAAACTAGAGCTCTCAAATGATCCAAAAATCAAAGTTCTGGGTGGGAAATGAGAGGAGTTATAAGCCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5219</snp_id>
        <super_contig>c002901207.Contig2</super_contig>
        <contig_pos>3301</contig_pos>
        <strand>+</strand>
        <context>TTTTCGATAT[A/T]TCGACTCTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCAAAGTTCTGGGTGGGAAATGAGAGGAGTTATAAGCCTTTTTCGATAT</left_flank>
        <right_flank>TCGACTCTAGAAAATTCAATTTCGAACTTTTCGTATTGGTTTTTTGGGAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTTTCTGTAAGTTTTATTTTTTTCCCTTTACCTCTAACAATTTTTCTTGAAACGTTTTTTTGTAATTTTAATAAATCAATTAATTTTTGAAAATCTCTTTTTTTTCAGTTTTTTTCTATTTTTACGGGTTCTTGCCTGGTTTCTACCTTTTTTTTCTTTTTTTTTGTGGAAGTTCATTTAAACATATTCCAAACATTCAAAAAATTTCCTATCAATTGATATAATTTGCATAATTTTTTTCAGATTCTTTCCTCCCAAAAATGCACATCTGCCCAATCGATGAACTTGAAATTCCACAAGAAAAAGATGATATACTGTATGAAGTGGATGAGCTTTTGAGCACATTCCGGGTCAAGGACACTTATGAGGCATTTGAGAAACTTCAATTTGTGAGTTTTAATTAACTGAAAGTTTAGAAAAACTAGAGCTCTCAAATGATCCAAAAATCAAAGTTCTGGGTGGGAAATGAGAGGAGTTATAAGCCTTTTTCGATATATCGACTCTAGAAAATTCAATTTCGAACTTTTCGTATTGGTTTTTTGGGATTTTAATTAAGAAAATTTCGAGGTATCACATGATACTTTAACTAAAGCTCTAGGTTGAAAACAAACAAAGTAATAAAACGGTTTACAGGGGTTAGACGTCTTTCAGAGCCGCTGGCCGCGGCCGACCGCGACTTAGAATAATCATTTTTATACCAAAATGATCCTTGTGGCATGAGCTACAAAAATATATTAATAACTTTGCAGGATTCTAACTTTGAAGCTAGTTACAGTTCAGAAAATAAACGCTAACTTGAAAACGAAGGGAGTTTTGGTGAAACTTTAATTTTAGGGTTTCAAAGCCTCGGAACTACGGTCGACCGCTACCGAGGACAATGGTTTTTGTATCAGAATGACCCTTATCACATAAGCTACAAAAATATACAACTAATTAATTAAAATTCTAATTATGAAGCTAGTTACAGGTTAAAACATGATGCATGTCTCCAGCTCG</canonical>
            <polymorphic>AATTTTTTCTGTAAGTTTTATTTTTTTCCCTTTACCTCTAACAATTTTTCTTGAAACGTTTTTTTGTAATTTTAATAAATCAATTAATTTTTGAAAATCTCTTTTTTTTCAGTTTTTTTCTATTTTTACGGGTTCTTGCCTGGTTTCTACCTTTTTTTTCTTTTTTTTTGTGGAAGTTCATTTAAACATATTCCAAACATTCAAAAAATTTCCTATCAATTGATATAATTTGCATAATTTTTTTCAGATTCTTTCCTCCCAAAAATGCACATCTGCCCAATCGATGAACTTGAAATTCCACAAGAAAAAGATGATATACTGTATGAAGTGGATGAGCTTTTGAGCACATTCCGGGTCAAGGACACTTATGAGGCATTTGAGAAACTTCAATTTGTGAGTTTTAATTAACTGAAAGTTTAGAAAAACTAGAGCTCTCAAATGATCCAAAAATCAAAGTTCTGGGTGGGAAATGAGAGGAGTTATAAGCCTTTTTCGATATWTCGACTCTAGAAAATTCAATTTCGAACTTTTCGTATTGGTTTTTTGGGATTTTAATTAAGAAAATTTCGAGGTATCACATGATACTTTAACTAAAGCTCTAGGTTGAAAACAAACAAAGTAATAAAACGGTTTACAGGGGTTAGACGTCTTTCAGAGCCGCTGGCCGCGGCCGACCGCGACTTAGAATAATCATTTTTATACCAAAATGATCCTTGTGGCATGAGCTACAAAAATATATTAATAACTTTGCAGGATTCTAACTTTGAAGCTAGTTACAGTTCAGAAAATAAACGCTAACTTGAAAACGAAGGGAGTTTTGGTGAAACTTTAATTTTAGGGTTTCAAAGCCTCGGAACTACGGTCGACCGCTACCGAGGACAATGGTTTTTGTATCAGAATGACCCTTATCACATAAGCTACAAAAATATACAACTAATTAATTAAAATTCTAATTATGAAGCTAGTTACAGGTTAAAACATGATGCATGTCTCCAGCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAGAAACTTCAATTTGTGAG</pcr_primer_p1>
		<pcr_primer_p2>CTTTGTTTGTTTTCAACCTAGAG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTTGAGAAACTTCAATTTGTGAGTTTTAATTAACTGAAAGTTTAGAAAAACTAGAGCTCTCAAATGATCCAAAAATCAAAGTTCTGGGTGGGAAATGAGAGGAGTTATAAGCCTTTTTCGATATATCGACTCTAGAAAATTCAATTTCGAACTTTTCGTATTGGTTTTTTGGGATTTTAATTAAGAAAATTTCGAGGTATCACATGATACTTTAACTAAAGCTCTAGGTTGAAAACAAACAAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTGAGAAACTTCAATTTGTGAGTTTTAATTAACTGAAAGTTTAGAAAAACTAGAGCTCTCAAATGATCCAAAAATCAAAGTTCTGGGTGGGAAATGAGAGGAGTTATAAGCCTTTTTCGATATWTCGACTCTAGAAAATTCAATTTCGAACTTTTCGTATTGGTTTTTTGGGATTTTAATTAAGAAAATTTCGAGGTATCACATGATACTTTAACTAAAGCTCTAGGTTGAAAACAAACAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5220</snp_id>
        <super_contig>c002901562.Contig1</super_contig>
        <contig_pos>20591</contig_pos>
        <strand>+</strand>
        <context>GACCCGGAGA[C/T]GTTATCAGTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGTCTGAAAAACCATCTGCTTCTGAAATTTTCTCGAATCGACCCGGAGA</left_flank>
        <right_flank>GTTATCAGTGTATTCCCCCATGCTTCACATTCCAATATGATTTATGGATA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGTATTATCTCATTTTGGAACCTACTTATTAAAATGTCAAATTTGAAAAGTTTCCGGTTATTGGAAACGATTTTCAAAAACGACGAAAAGTTGAAACGCACACACACAGGCATCACACGCAAAAAGTAGCTGCGCAAGTGCTGTCGGAAAGGTTTCCTTTTCGTTTTTTTCCGTCCAACTACCGCACTTCAAAAAAATTTCACATATATATGTATTTGAAAGTGAAGCGGCATGTTCTATTCCGTCTCTCTTTCTCTATTTCTTTGTTGTTTGTTCATTTCGCTTCCTTCCGATTCGTGTACTCTCTCCCCTACCTTTTGCCTCCTACTTCTTCCTCTCCTTCTAGTTACCTAGGGGATATATGTACACTCTTTTTAAAAAAAATGCCTCAAAATCGTACAGATTTTGATGACGACGATCTAGAAAGCTATCTAGAAGGCTCTGTTTGGTCTGAAAAACCATCTGCTTCTGAAATTTTCTCGAATCGACCCGGAGACGTTATCAGTGTATTCCCCCATGCTTCACATTCCAATATGATTTATGGATATCCTTCGAACTTTCGAGAGACAGTTTTCCCGTAAATTTTCAATTATTCGTATAAAAGTAAAAGATGATTCCCCTTCCAGAACACAACGTGGTTCTACAGACCCCAGTTATGATGATTACTATACAAAGGTATCAACAATATTTAAACTCCAAGCCCAGATGGAGAAGGTTTTTTGGATAACCCAATTGAAAATTTTTAATAAGATTAAAAAAAATTTTTTTTCTGAGTTTCCGCATATTAGAACTTTGGAATTAGACCACTTATAAATTTCTGATTAGCAGAGGTTCATAATTTTCGGATTTGGTACTTTCGAATTTCGAACTTTTAAACTTATTGTTAGAATTTTCGAATTATTGAACGTTTGAATTTCTGAATATTTTTTTTGGAATTCTCATTTATATATTTTGGAATTCTCATTTATAAGAATATATCTCAACCAGCAAGCTGGTG</canonical>
            <polymorphic>TTTCGTATTATCTCATTTTGGAACCTACTTATTAAAATGTCAAATTTGAAAAGTTTCCGGTTATTGGAAACGATTTTCAAAAACGACGAAAAGTTGAAACGCACACACACAGGCATCACACGCAAAAAGTAGCTGCGCAAGTGCTGTCGGAAAGGTTTCCTTTTCGTTTTTTTCCGTCCAACTACCGCACTTCAAAAAAATTTCACATATATATGTATTTGAAAGTGAAGCGGCATGTTCTATTCCGTCTCTCTTTCTCTATTTCTTTGTTGTTTGTTCATTTCGCTTCCTTCCGATTCGTGTACTCTCTCCCCTACCTTTTGCCTCCTACTTCTTCCTCTCCTTCTAGTTACCTAGGGGATATATGTACACTCTTTTTAAAAAAAATGCCTCAAAATCGTACAGATTTTGATGACGACGATCTAGAAAGCTATCTAGAAGGCTCTGTTTGGTCTGAAAAACCATCTGCTTCTGAAATTTTCTCGAATCGACCCGGAGAYGTTATCAGTGTATTCCCCCATGCTTCACATTCCAATATGATTTATGGATATCCTTCGAACTTTCGAGAGACAGTTTTCCCGTAAATTTTCAATTATTCGTATAAAAGTAAAAGATGATTCCCCTTCCAGAACACAACGTGGTTCTACAGACCCCAGTTATGATGATTACTATACAAAGGTATCAACAATATTTAAACTCCAAGCCCAGATGGAGAAGGTTTTTTGGATAACCCAATTGAAAATTTTTAATAAGATTAAAAAAAATTTTTTTTCTGAGTTTCCGCATATTAGAACTTTGGAATTAGACCACTTATAAATTTCTGATTAGCAGAGGTTCATAATTTTCGGATTTGGTACTTTCGAATTTCGAACTTTTAAACTTATTGTTAGAATTTTCGAATTATTGAACGTTTGAATTTCTGAATATTTTTTTTGGAATTCTCATTTATATATTTTGGAATTCTCATTTATAAGAATATATCTCAACCAGCAAGCTGGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>499 272 137 92</canonical_bands>
                <polymorphic_bands>636 272 92</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGCTATCTAGAAGGCTCTGTT</pcr_primer_p1>
		<pcr_primer_p2>AGTAATCATCATAACTGGGGTCT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAAGCTATCTAGAAGGCTCTGTTTGGTCTGAAAAACCATCTGCTTCTGAAATTTTCTCGAATCGACCCGGAGACGTTATCAGTGTATTCCCCCATGCTTCACATTCCAATATGATTTATGGATATCCTTCGAACTTTCGAGAGACAGTTTTCCCGTAAATTTTCAATTATTCGTATAAAAGTAAAAGATGATTCCCCTTCCAGAACACAACGTGGTTCTACAGACCCCAGTTATGATGATTACT</canonical_amplicon>
		<polymorphic_amplicon>AAAGCTATCTAGAAGGCTCTGTTTGGTCTGAAAAACCATCTGCTTCTGAAATTTTCTCGAATCGACCCGGAGAYGTTATCAGTGTATTCCCCCATGCTTCACATTCCAATATGATTTATGGATATCCTTCGAACTTTCGAGAGACAGTTTTCCCGTAAATTTTCAATTATTCGTATAAAAGTAAAAGATGATTCCCCTTCCAGAACACAACGTGGTTCTACAGACCCCAGTTATGATGATTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5221</snp_id>
        <super_contig>c002901562.Contig1</super_contig>
        <contig_pos>20393</contig_pos>
        <strand>+</strand>
        <context>TCCGATTCGT[A/G]TACTCTCTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTTCTCTATTTCTTTGTTGTTTGTTCATTTCGCTTCCTTCCGATTCGT</left_flank>
        <right_flank>TACTCTCTCCCCTACCTTTTGCCTCCTACTTCTTCCTCTCCTTCTAGTTA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTTGCTTGAGAGTTGATGTAATTATAAAGACTAGATATCGTTGGGATTATTGTAGTTACTAATCTAACAAGATTCCATTTTGATGGAAATTTTGATAAGTAGAGCTGTTTACTCCATCCCAGGAAAAGTTTTTAAATGATGGTTTATCCTATTTTTACATTGTCAGTTTGCCATGTGCACGTAAAAGTAGATCACATTTCGTATTATCTCATTTTGGAACCTACTTATTAAAATGTCAAATTTGAAAAGTTTCCGGTTATTGGAAACGATTTTCAAAAACGACGAAAAGTTGAAACGCACACACACAGGCATCACACGCAAAAAGTAGCTGCGCAAGTGCTGTCGGAAAGGTTTCCTTTTCGTTTTTTTCCGTCCAACTACCGCACTTCAAAAAAATTTCACATATATATGTATTTGAAAGTGAAGCGGCATGTTCTATTCCGTCTCTCTTTCTCTATTTCTTTGTTGTTTGTTCATTTCGCTTCCTTCCGATTCGTGTACTCTCTCCCCTACCTTTTGCCTCCTACTTCTTCCTCTCCTTCTAGTTACCTAGGGGATATATGTACACTCTTTTTAAAAAAAATGCCTCAAAATCGTACAGATTTTGATGACGACGATCTAGAAAGCTATCTAGAAGGCTCTGTTTGGTCTGAAAAACCATCTGCTTCTGAAATTTTCTCGAATCGACCCGGAGACGTTATCAGTGTATTCCCCCATGCTTCACATTCCAATATGATTTATGGATATCCTTCGAACTTTCGAGAGACAGTTTTCCCGTAAATTTTCAATTATTCGTATAAAAGTAAAAGATGATTCCCCTTCCAGAACACAACGTGGTTCTACAGACCCCAGTTATGATGATTACTATACAAAGGTATCAACAATATTTAAACTCCAAGCCCAGATGGAGAAGGTTTTTTGGATAACCCAATTGAAAATTTTTAATAAGATTAAAAAAAATTTTTTTTCTGAGTTTCCGCATATTAGAACTTTGGAAT</canonical>
            <polymorphic>TCTTTGCTTGAGAGTTGATGTAATTATAAAGACTAGATATCGTTGGGATTATTGTAGTTACTAATCTAACAAGATTCCATTTTGATGGAAATTTTGATAAGTAGAGCTGTTTACTCCATCCCAGGAAAAGTTTTTAAATGATGGTTTATCCTATTTTTACATTGTCAGTTTGCCATGTGCACGTAAAAGTAGATCACATTTCGTATTATCTCATTTTGGAACCTACTTATTAAAATGTCAAATTTGAAAAGTTTCCGGTTATTGGAAACGATTTTCAAAAACGACGAAAAGTTGAAACGCACACACACAGGCATCACACGCAAAAAGTAGCTGCGCAAGTGCTGTCGGAAAGGTTTCCTTTTCGTTTTTTTCCGTCCAACTACCGCACTTCAAAAAAATTTCACATATATATGTATTTGAAAGTGAAGCGGCATGTTCTATTCCGTCTCTCTTTCTCTATTTCTTTGTTGTTTGTTCATTTCGCTTCCTTCCGATTCGTRTACTCTCTCCCCTACCTTTTGCCTCCTACTTCTTCCTCTCCTTCTAGTTACCTAGGGGATATATGTACACTCTTTTTAAAAAAAATGCCTCAAAATCGTACAGATTTTGATGACGACGATCTAGAAAGCTATCTAGAAGGCTCTGTTTGGTCTGAAAAACCATCTGCTTCTGAAATTTTCTCGAATCGACCCGGAGACGTTATCAGTGTATTCCCCCATGCTTCACATTCCAATATGATTTATGGATATCCTTCGAACTTTCGAGAGACAGTTTTCCCGTAAATTTTCAATTATTCGTATAAAAGTAAAAGATGATTCCCCTTCCAGAACACAACGTGGTTCTACAGACCCCAGTTATGATGATTACTATACAAAGGTATCAACAATATTTAAACTCCAAGCCCAGATGGAGAAGGTTTTTTGGATAACCCAATTGAAAATTTTTAATAAGATTAAAAAAAATTTTTTTTCTGAGTTTCCGCATATTAGAACTTTGGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 401 65 33</canonical_bands>
                <polymorphic_bands>566 401 33</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>179 162 139 106 105 75 69 46 23 22 17 16 15 9 7 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>179 162 144 139 106 105 46 23 22 17 16 15 9 7 2 2 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>499 436 65</canonical_bands>
                <polymorphic_bands>564 436</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTTCTATTCCGTCTCTCTTTC</pcr_primer_p1>
		<pcr_primer_p2>GAGAAAATTTCAGAAGCAGATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGTTCTATTCCGTCTCTCTTTCTCTATTTCTTTGTTGTTTGTTCATTTCGCTTCCTTCCGATTCGTGTACTCTCTCCCCTACCTTTTGCCTCCTACTTCTTCCTCTCCTTCTAGTTACCTAGGGGATATATGTACACTCTTTTTAAAAAAAATGCCTCAAAATCGTACAGATTTTGATGACGACGATCTAGAAAGCTATCTAGAAGGCTCTGTTTGGTCTGAAAAACCATCTGCTTCTGAAATTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>ATGTTCTATTCCGTCTCTCTTTCTCTATTTCTTTGTTGTTTGTTCATTTCGCTTCCTTCCGATTCGTRTACTCTCTCCCCTACCTTTTGCCTCCTACTTCTTCCTCTCCTTCTAGTTACCTAGGGGATATATGTACACTCTTTTTAAAAAAAATGCCTCAAAATCGTACAGATTTTGATGACGACGATCTAGAAAGCTATCTAGAAGGCTCTGTTTGGTCTGAAAAACCATCTGCTTCTGAAATTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5258</snp_id>
        <super_contig>c003000925.Contig2</super_contig>
        <contig_pos>8934</contig_pos>
        <strand>+</strand>
        <context>GAAATGTTTT[A/G]ATTTGCCCCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGTTTGTAAATTTAATGAAATTTGGACCTAATTTAGACAGAAATGTTTT</left_flank>
        <right_flank>ATTTGCCCCCTGAAAATCTTAGTCGCTCCAGGAATTCTGAAACAATGTTT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACGATAAAGGGAGGGGGATCGACGCAATGGACCGCCCGAAAGACCACCTGTGTCTGCTTCCCTCTCTCTCTCTCTCTCTCTCTTTTCGGGAGATTCGTCCTTAACTGGGTCATATCACGTCGTCGTCATTTCCTCGGTTCTCCTTAAAGGAATGTATTGTTGAAAACTTTTTTCCTTCTTTTTTGTTTTTGTTTTCTTCTTCTGCAAGGTGTTCGAATTATTGATTGATTACCGTACTAAACTTGGTATTTCCTGTTTCAGTTTATTTAAAACAAAATAAACACCACCATCATCATAATGTCACTTTATAATAACCAAAAAAACCATAATAGTGTAAAAAGGGGGAGAAACCGGATTTAGGACACAGGGCATTTTGGAGGGGTTGTTTTTTTTGGATGGGGTCTCATCATCACAAAATTTTTAGTTTTTAGTACTGCTTTGATTTTATTAGTTTGTAAATTTAATGAAATTTGGACCTAATTTAGACAGAAATGTTTTAATTTGCCCCCTGAAAATCTTAGTCGCTCCAGGAATTCTGAAACAATGTTTTTAAAATTTTGAGAAACTTTTTTGTGAGAATGTTATAATTTTTCAAGACCTCGAATTTGGAATCCCTCAAAATCTAGTCATTTTTAGCTGATTTCTAAGAAAAAGGTTATCTGGGCCGATTTCTTTCCCAAATCTCACATTTTTGGCCAGACCTAAAGTATATATTCTTTGAAGGGCTAAAAAAGTATTCTAGAACTTTTCAATGTTTGTGAAACATTTAGAGTACACTAAACAAAAAGAGAGCTTCATTTTTCTAGTTGACGACTTTTTTCTAAAATTTAGTCCTGAGGAGCACATCTCCTTAGAATTGAATTTTACGAAAAAGTTGTCAATTACAAAAATAAAGCTCTATTTTTGTTCAGTATGCTATAAAATTTTCAGAGAAATCGAAAAATTATGAAGTTATTTTGTAGAGCTTTAAACATCACTATCTTTCAACGAAAAAGTCAA</canonical>
            <polymorphic>CACGATAAAGGGAGGGGGATCGACGCAATGGACCGCCCGAAAGACCACCTGTGTCTGCTTCCCTCTCTCTCTCTCTCTCTCTCTTTTCGGGAGATTCGTCCTTAACTGGGTCATATCACGTCGTCGTCATTTCCTCGGTTCTCCTTAAAGGAATGTATTGTTGAAAACTTTTTTCCTTCTTTTTTGTTTTTGTTTTCTTCTTCTGCAAGGTGTTCGAATTATTGATTGATTACCGTACTAAACTTGGTATTTCCTGTTTCAGTTTATTTAAAACAAAATAAACACCACCATCATCATAATGTCACTTTATAATAACCAAAAAAACCATAATAGTGTAAAAAGGGGGAGAAACCGGATTTAGGACACAGGGCATTTTGGAGGGGTTGTTTTTTTTGGATGGGGTCTCATCATCACAAAATTTTTAGTTTTTAGTACTGCTTTGATTTTATTAGTTTGTAAATTTAATGAAATTTGGACCTAATTTAGACAGAAATGTTTTRATTTGCCCCCTGAAAATCTTAGTCGCTCCAGGAATTCTGAAACAATGTTTTTAAAATTTTGAGAAACTTTTTTGTGAGAATGTTATAATTTTTCAAGACCTCGAATTTGGAATCCCTCAAAATCTAGTCATTTTTAGCTGATTTCTAAGAAAAAGGTTATCTGGGCCGATTTCTTTCCCAAATCTCACATTTTTGGCCAGACCTAAAGTATATATTCTTTGAAGGGCTAAAAAAGTATTCTAGAACTTTTCAATGTTTGTGAAACATTTAGAGTACACTAAACAAAAAGAGAGCTTCATTTTTCTAGTTGACGACTTTTTTCTAAAATTTAGTCCTGAGGAGCACATCTCCTTAGAATTGAATTTTACGAAAAAGTTGTCAATTACAAAAATAAAGCTCTATTTTTGTTCAGTATGCTATAAAATTTTCAGAGAAATCGAAAAATTATGAAGTTATTTTGTAGAGCTTTAAACATCACTATCTTTCAACGAAAAAGTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>417 194 123 102 53 43 36 32</canonical_bands>
                <polymorphic_bands>417 194 123 102 89 43 32</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>222 216 200 58 42 42 33 32 30 22 20 20 20 17 11 10 5</canonical_bands>
                <polymorphic_bands>222 216 200 58 53 42 42 32 30 22 20 20 17 11 10 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTAGGACACAGGGCATTT</pcr_primer_p1>
		<pcr_primer_p2>CGAGGTCTTGAAAAATTATAACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTTAGGACACAGGGCATTTTGGAGGGGTTGTTTTTTTTGGATGGGGTCTCATCATCACAAAATTTTTAGTTTTTAGTACTGCTTTGATTTTATTAGTTTGTAAATTTAATGAAATTTGGACCTAATTTAGACAGAAATGTTTTAATTTGCCCCCTGAAAATCTTAGTCGCTCCAGGAATTCTGAAACAATGTTTTTAAAATTTTGAGAAACTTTTTTGTGAGAATGTTATAATTTTTCAAGACCTCG</canonical_amplicon>
		<polymorphic_amplicon>ATTTAGGACACAGGGCATTTTGGAGGGGTTGTTTTTTTTGGATGGGGTCTCATCATCACAAAATTTTTAGTTTTTAGTACTGCTTTGATTTTATTAGTTTGTAAATTTAATGAAATTTGGACCTAATTTAGACAGAAATGTTTTRATTTGCCCCCTGAAAATCTTAGTCGCTCCAGGAATTCTGAAACAATGTTTTTAAAATTTTGAGAAACTTTTTTGTGAGAATGTTATAATTTTTCAAGACCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5259</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>52427</contig_pos>
        <strand>+</strand>
        <context>ACCTAATTTC[G/T]AAGATTTAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACAGAGAATATTAATTTCTTACAGGATAAAAAGAATGTGACCTAATTTC</left_flank>
        <right_flank>AAGATTTAGTTTATAACCGAAAGTCAATAAAATCTAGCTCAAAACCGGCG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACGAACACGGAAGTTGCGTTGTGGATTACGAGCCATTGGTTTCGAAGTGTCGACGAGTTGGAAGTTGTGCTCATCCATTCCGTGGATGTAGTCGAATTGGCTTCCAGCATTGGCAGCGGATCCGTAGACGCGCTCGTTGTATCTGAAACATTTTTTTGTTTGCGAAAACTGGCAACTAAAAGTCAATACCTCTCATTTCCTCTTCGGAAGAAACGATCGACTCCAATCCAGTCAGCAACACGACCAATACGATCGGCTTTGTTGAACTGCTGGAACGGAACTGGCTCCACAGACGAAGAGCTGGTTGTCAATGGTCCCCATCCGGACGTGTTATCAGCCAACGACAATAATTCGAATTTCGGTAGTTCTGTTGTAGCCATACCTGAAAGGAAAAAAAGCAAAATTGTGAAATCCGCAATTTTAGGCCGAGGGGGATTTAAGACGAAGGAACAGAGAATATTAATTTCTTACAGGATAAAAAGAATGTGACCTAATTTCGAAGATTTAGTTTATAACCGAAAGTCAATAAAATCTAGCTCAAAACCGGCGAAAACTCGGAAAACGCGTGGAGAAATTGGAAAAAATTTTGAAGGCAGAACGACGCCAATGGTGCACACTAATTGCGTCAGCATGGCGCAATCCTCGATGTTTACTCCTGGGAAGAATCCGAAGTAAACAGGAGCCAGTGGAAGTTTCTAATCCATATTTTTCAACGTTAAAAATTTTCGAAAAGCTCTAAAAGTATCAAAGTTATGGAAAATATATAAACTATATCAGGAACATAGTTGAAAACCTATCAAAAACTTGTTCCGCGAAGACGTAAAACTGAAAATCTTCTGTTTATAGGAACGGGTTTGATGAATACGGTGCCACAGCGTCAACGCGTCATTCAACTCTACAGACAAATCCTAAAATTGGCCAAGAACTGGAAAGCCAAAGAGGAGCCGAACACCATCACTGAGCGCCAGCAAATTATCGCCGAAGCGCAACGAACATTCA</canonical>
            <polymorphic>GACGAACACGGAAGTTGCGTTGTGGATTACGAGCCATTGGTTTCGAAGTGTCGACGAGTTGGAAGTTGTGCTCATCCATTCCGTGGATGTAGTCGAATTGGCTTCCAGCATTGGCAGCGGATCCGTAGACGCGCTCGTTGTATCTGAAACATTTTTTTGTTTGCGAAAACTGGCAACTAAAAGTCAATACCTCTCATTTCCTCTTCGGAAGAAACGATCGACTCCAATCCAGTCAGCAACACGACCAATACGATCGGCTTTGTTGAACTGCTGGAACGGAACTGGCTCCACAGACGAAGAGCTGGTTGTCAATGGTCCCCATCCGGACGTGTTATCAGCCAACGACAATAATTCGAATTTCGGTAGTTCTGTTGTAGCCATACCTGAAAGGAAAAAAAGCAAAATTGTGAAATCCGCAATTTTAGGCCGAGGGGGATTTAAGACGAAGGAACAGAGAATATTAATTTCTTACAGGATAAAAAGAATGTGACCTAATTTCKAAGATTTAGTTTATAACCGAAAGTCAATAAAATCTAGCTCAAAACCGGCGAAAACTCGGAAAACGCGTGGAGAAATTGGAAAAAATTTTGAAGGCAGAACGACGCCAATGGTGCACACTAATTGCGTCAGCATGGCGCAATCCTCGATGTTTACTCCTGGGAAGAATCCGAAGTAAACAGGAGCCAGTGGAAGTTTCTAATCCATATTTTTCAACGTTAAAAATTTTCGAAAAGCTCTAAAAGTATCAAAGTTATGGAAAATATATAAACTATATCAGGAACATAGTTGAAAACCTATCAAAAACTTGTTCCGCGAAGACGTAAAACTGAAAATCTTCTGTTTATAGGAACGGGTTTGATGAATACGGTGCCACAGCGTCAACGCGTCATTCAACTCTACAGACAAATCCTAAAATTGGCCAAGAACTGGAAAGCCAAAGAGGAGCCGAACACCATCACTGAGCGCCAGCAAATTATCGCCGAAGCGCAACGAACATTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>310 273 229 145 43</canonical_bands>
                <polymorphic_bands>374 310 273 43</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>272 146 145 135 125 83 44 42 8</canonical_bands>
                <polymorphic_bands>291 272 135 125 83 44 42 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAAGACGAAGGAACAGAGAATA</pcr_primer_p1>
		<pcr_primer_p2>CACTGGCTCCTGTTTACTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTAAGACGAAGGAACAGAGAATATTAATTTCTTACAGGATAAAAAGAATGTGACCTAATTTCGAAGATTTAGTTTATAACCGAAAGTCAATAAAATCTAGCTCAAAACCGGCGAAAACTCGGAAAACGCGTGGAGAAATTGGAAAAAATTTTGAAGGCAGAACGACGCCAATGGTGCACACTAATTGCGTCAGCATGGCGCAATCCTCGATGTTTACTCCTGGGAAGAATCCGAAGTAAACAGGAGCCAGTG</canonical_amplicon>
		<polymorphic_amplicon>TTAAGACGAAGGAACAGAGAATATTAATTTCTTACAGGATAAAAAGAATGTGACCTAATTTCKAAGATTTAGTTTATAACCGAAAGTCAATAAAATCTAGCTCAAAACCGGCGAAAACTCGGAAAACGCGTGGAGAAATTGGAAAAAATTTTGAAGGCAGAACGACGCCAATGGTGCACACTAATTGCGTCAGCATGGCGCAATCCTCGATGTTTACTCCTGGGAAGAATCCGAAGTAAACAGGAGCCAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5260</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>106702</contig_pos>
        <strand>+</strand>
        <context>CCAAAATTTA[C/G]TTAAAATTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAAATGAAAAAATCCCGGATAAATATTGCCGAAAATATACCAAAATTTA</left_flank>
        <right_flank>TTAAAATTTCTTATTTGTAGATTTTCCCAACAAATTCCCTTTAAACTCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCAAGCTCGGTGAGGCTTGTGGGCCGGGTCCTGGCCTGTTGAGTTTGGTTTTATTATGCTCAGTTTTATTATGTTACAGTTTTATTCTACTCACTATCAGTTTTGTTAGCGAGTACCGCCTGCTACTCGACACATTTGGCGGTGGTACAGATTTCAAAAACCCATCAGAAAAAATGAAAAAATCCCGGATAAATATTGCCGAAAATATACCAAAATTTAGTTAAAATTTCTTATTTGTAGATTTTCCCAACAAATTCCCTTTAAACTCTGGAACGAAATTGAATTAAAGAAATGCAGAAAACATCAAAAAGTTAGCTAAAAATCAGTTCAAAGGAAGATGACTTTCTTTGGAGGCTACAGATTACGGTGTCAATCGGGAAGATTCTACATTCAGATCTGAAATGAGACAACACTGCTTAATCAAAATTATAGAAAATATTATTCAAATCACAACAATTTATTCACATAACAAACCAATAAAAGATTATCAAAATCAGAAATGTGGAGCACTTAATCCAGGATAATCTCTGAAAAAAGTTTTGTCCGTTAAAAAAACGAAGAAGAATCTCGAATAATCTTGTTAATCCAGCTGACTGATTTCAAGACATGAGCTCTACTTTTCCCCATTCTGGTATGAAGAGCTCTTCAGAAACTGATTTCGAGAAAAATATGTTTTAGACGATTTTTGAGCTCTCGCCTTCCTATCGAAAACCCCATTTG</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCAAGCTCGGTGAGGCTTGTGGGCCGGGTCCTGGCCTGTTGAGTTTGGTTTTATTATGCTCAGTTTTATTATGTTACAGTTTTATTCTACTCACTATCAGTTTTGTTAGCGAGTACCGCCTGCTACTCGACACATTTGGCGGTGGTACAGATTTCAAAAACCCATCAGAAAAAATGAAAAAATCCCGGATAAATATTGCCGAAAATATACCAAAATTTASTTAAAATTTCTTATTTGTAGATTTTCCCAACAAATTCCCTTTAAACTCTGGAACGAAATTGAATTAAAGAAATGCAGAAAACATCAAAAAGTTAGCTAAAAATCAGTTCAAAGGAAGATGACTTTCTTTGGAGGCTACAGATTACGGTGTCAATCGGGAAGATTCTACATTCAGATCTGAAATGAGACAACACTGCTTAATCAAAATTATAGAAAATATTATTCAAATCACAACAATTTATTCACATAACAAACCAATAAAAGATTATCAAAATCAGAAATGTGGAGCACTTAATCCAGGATAATCTCTGAAAAAAGTTTTGTCCGTTAAAAAAACGAAGAAGAATCTCGAATAATCTTGTTAATCCAGCTGACTGATTTCAAGACATGAGCTCTACTTTTCCCCATTCTGGTATGAAGAGCTCTTCAGAAACTGATTTCGAGAAAAATATGTTTTAGACGATTTTTGAGCTCTCGCCTTCCTATCGAAAACCCCATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCAGTTTTGTTAGCGAGTACC</pcr_primer_p1>
		<pcr_primer_p2>AAGTCATCTTCCTTTGAACTGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATCAGTTTTGTTAGCGAGTACCGCCTGCTACTCGACACATTTGGCGGTGGTACAGATTTCAAAAACCCATCAGAAAAAATGAAAAAATCCCGGATAAATATTGCCGAAAATATACCAAAATTTAGTTAAAATTTCTTATTTGTAGATTTTCCCAACAAATTCCCTTTAAACTCTGGAACGAAATTGAATTAAAGAAATGCAGAAAACATCAAAAAGTTAGCTAAAAATCAGTTCAAAGGAAGATGACTT</canonical_amplicon>
		<polymorphic_amplicon>TATCAGTTTTGTTAGCGAGTACCGCCTGCTACTCGACACATTTGGCGGTGGTACAGATTTCAAAAACCCATCAGAAAAAATGAAAAAATCCCGGATAAATATTGCCGAAAATATACCAAAATTTASTTAAAATTTCTTATTTGTAGATTTTCCCAACAAATTCCCTTTAAACTCTGGAACGAAATTGAATTAAAGAAATGCAGAAAACATCAAAAAGTTAGCTAAAAATCAGTTCAAAGGAAGATGACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5262</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>107169</contig_pos>
        <strand>+</strand>
        <context>AGACGATTTT[C/T]GAGCTCTCGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGAGCTCTTCAGAAACTGATTTCGAGAAAAATATGTTTTAGACGATTTT</left_flank>
        <right_flank>GAGCTCTCGCCTTCCTATCGAAAACCCCATTTGAAAATAATTTGAAAGGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAAATATTGCCGAAAATATACCAAAATTTAGTTAAAATTTCTTATTTGTAGATTTTCCCAACAAATTCCCTTTAAACTCTGGAACGAAATTGAATTAAAGAAATGCAGAAAACATCAAAAAGTTAGCTAAAAATCAGTTCAAAGGAAGATGACTTTCTTTGGAGGCTACAGATTACGGTGTCAATCGGGAAGATTCTACATTCAGATCTGAAATGAGACAACACTGCTTAATCAAAATTATAGAAAATATTATTCAAATCACAACAATTTATTCACATAACAAACCAATAAAAGATTATCAAAATCAGAAATGTGGAGCACTTAATCCAGGATAATCTCTGAAAAAAGTTTTGTCCGTTAAAAAAACGAAGAAGAATCTCGAATAATCTTGTTAATCCAGCTGACTGATTTCAAGACATGAGCTCTACTTTTCCCCATTCTGGTATGAAGAGCTCTTCAGAAACTGATTTCGAGAAAAATATGTTTTAGACGATTTTTGAGCTCTCGCCTTCCTATCGAAAACCCCATTTGAAAATAATTTGAAAGGTGCTCGTTTTGTTTATTGAATGGTTAATTGGTTTCTTAATTGTCTTCCTGAACCTTTCAAAACTCTCCATTATTTTCAAGGTGCTCTATCAACAGAGCGCATTTTCTACCTTTTCTAATCCTGCTAAAATAAAAGAGAATCCTAATGAAGTGGTGGGTATAAAAAGAGAGAAAGAGCAGAAAAGTGCAAATAATGGAAGTCATTTCAGATGCATACCTGACCTCTTCCTCTTCTTTTTCCTGGACAACTTACTCACCTTTTTTGTGTCTCCTATTCTTGCTTTTTTTGTTCTTTCTGACTCAGTTTTCTCTTTTTAGCTGTTTTTATTCAAGTTCGAATGATCTTTAAAAACCATATTTAGCCATTTGAAATCCATTAAAAAGTTATATGGAAAATACTAGGAAACTTCCGGAAAATTGCTTTTTCGATTTCTAGAAAAATTTTGAAGTTT</canonical>
            <polymorphic>GATAAATATTGCCGAAAATATACCAAAATTTAGTTAAAATTTCTTATTTGTAGATTTTCCCAACAAATTCCCTTTAAACTCTGGAACGAAATTGAATTAAAGAAATGCAGAAAACATCAAAAAGTTAGCTAAAAATCAGTTCAAAGGAAGATGACTTTCTTTGGAGGCTACAGATTACGGTGTCAATCGGGAAGATTCTACATTCAGATCTGAAATGAGACAACACTGCTTAATCAAAATTATAGAAAATATTATTCAAATCACAACAATTTATTCACATAACAAACCAATAAAAGATTATCAAAATCAGAAATGTGGAGCACTTAATCCAGGATAATCTCTGAAAAAAGTTTTGTCCGTTAAAAAAACGAAGAAGAATCTCGAATAATCTTGTTAATCCAGCTGACTGATTTCAAGACATGAGCTCTACTTTTCCCCATTCTGGTATGAAGAGCTCTTCAGAAACTGATTTCGAGAAAAATATGTTTTAGACGATTTTYGAGCTCTCGCCTTCCTATCGAAAACCCCATTTGAAAATAATTTGAAAGGTGCTCGTTTTGTTTATTGAATGGTTAATTGGTTTCTTAATTGTCTTCCTGAACCTTTCAAAACTCTCCATTATTTTCAAGGTGCTCTATCAACAGAGCGCATTTTCTACCTTTTCTAATCCTGCTAAAATAAAAGAGAATCCTAATGAAGTGGTGGGTATAAAAAGAGAGAAAGAGCAGAAAAGTGCAAATAATGGAAGTCATTTCAGATGCATACCTGACCTCTTCCTCTTCTTTTTCCTGGACAACTTACTCACCTTTTTTGTGTCTCCTATTCTTGCTTTTTTTGTTCTTTCTGACTCAGTTTTCTCTTTTTAGCTGTTTTTATTCAAGTTCGAATGATCTTTAAAAACCATATTTAGCCATTTGAAATCCATTAAAAAGTTATATGGAAAATACTAGGAAACTTCCGGAAAATTGCTTTTTCGATTTCTAGAAAAATTTTGAAGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTAATCCAGCTGACTGATTTC</pcr_primer_p1>
		<pcr_primer_p2>GTTGATAGAGCACCTTGAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTAATCCAGCTGACTGATTTCAAGACATGAGCTCTACTTTTCCCCATTCTGGTATGAAGAGCTCTTCAGAAACTGATTTCGAGAAAAATATGTTTTAGACGATTTTTGAGCTCTCGCCTTCCTATCGAAAACCCCATTTGAAAATAATTTGAAAGGTGCTCGTTTTGTTTATTGAATGGTTAATTGGTTTCTTAATTGTCTTCCTGAACCTTTCAAAACTCTCCATTATTTTCAAGGTGCTCTATCAAC</canonical_amplicon>
		<polymorphic_amplicon>GTTAATCCAGCTGACTGATTTCAAGACATGAGCTCTACTTTTCCCCATTCTGGTATGAAGAGCTCTTCAGAAACTGATTTCGAGAAAAATATGTTTTAGACGATTTTYGAGCTCTCGCCTTCCTATCGAAAACCCCATTTGAAAATAATTTGAAAGGTGCTCGTTTTGTTTATTGAATGGTTAATTGGTTTCTTAATTGTCTTCCTGAACCTTTCAAAACTCTCCATTATTTTCAAGGTGCTCTATCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5264</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>108939</contig_pos>
        <strand></strand>
        <context>TTTCGTaaga[C/T]atcgaaattc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCTTTCCTTGTAGAAAGTTCTGTGGACAATTTTTAAGTTTTCGTAAGA</left_flank>
        <right_flank>ATCGAAATTCTATCAAGGGATAAAATGTTTTTTTTAATATTATCAAAAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTTTTCAAACACAATTTTCAACACATGTTTCCTGTCAAATCACTTGTCATTTTCCTAACCACAAATCAATCTTTTCTCGCAAAAAAATCACATTTTCTCCAGAAAGATGAACTTCCAAGCACCAAGACGACATCAGTACTCAAAGGACAACAGTGAAATTGATGAGGAGCGGAGGTAAAACGAAGAATATGACAGCAAAAGATATCAAAGTGTAATACTAAATTCTCTTGGGAGCGGATGATCCATTCCACGTACTTTAGGTTGTGTCCTCCTATTCTCCTATTCTTCTCTTTCTCTTTCCGGAGAACATAATTTGGTTAGATGTCGTCTCGAAGAAATAGTATTCGAGTTTGAATGACACAGAGTAATGCACATCTTGGACAGATTGCTTTCCACCCAAATCCTTTTCTCCACCTTTTTTGTTTTTTTTGTTTCGAGTTTTTCGCATTTCTTTCCTTGTAGAAAGTTCTGTGGACAATTTTTAAGTTTTCGTAAGACATCGAAATTCTATCAAGGGATAAAATGTTTTTTTTAATATTATCAAAAATATTTTATCAGCTGATCACTTTTTGATATACTATATTGAAATCTAGATAATTGAAATACAGTTCCATTTGGGTTTCAATTTTAACTTTCACAACAAAGTTACCATAAGAAAAAGTGTGTCCCATCCGAGAAGGAGTAATGTTGTTTACAAAATTTTATGCTAAACTTGACCTANTTTTCTCAAAAATTTTTAATAATCAGTTTTTCCCAAACCATTAAAGCATTGCTCCTCTTGCAAAATATGCCATATTTGGGTCAAAGTGTTGAAATTGCTACCTTGAACTTTGAAATGAATTATCTCGGTTCCTATAAGAGGTATCAAAATCATTGAAACTGATATATTGTTTATCATAACATCACCTATATTTCAGTTGACAGTTTTTGACATCTTTCAAAGGAACCGAGATAATTGAGCTCAAAGTGCAATTAAGTGGCGACGTTCCATGCCTAAT</canonical>
            <polymorphic>CTCTTTTCAAACACAATTTTCAACACATGTTTCCTGTCAAATCACTTGTCATTTTCCTAACCACAAATCAATCTTTTCTCGCAAAAAAATCACATTTTCTCCAGAAAGATGAACTTCCAAGCACCAAGACGACATCAGTACTCAAAGGACAACAGTGAAATTGATGAGGAGCGGAGGTAAAACGAAGAATATGACAGCAAAAGATATCAAAGTGTAATACTAAATTCTCTTGGGAGCGGATGATCCATTCCACGTACTTTAGGTTGTGTCCTCCTATTCTCCTATTCTTCTCTTTCTCTTTCCGGAGAACATAATTTGGTTAGATGTCGTCTCGAAGAAATAGTATTCGAGTTTGAATGACACAGAGTAATGCACATCTTGGACAGATTGCTTTCCACCCAAATCCTTTTCTCCACCTTTTTTGTTTTTTTTGTTTCGAGTTTTTCGCATTTCTTTCCTTGTAGAAAGTTCTGTGGACAATTTTTAAGTTTTCGTAAGAYATCGAAATTCTATCAAGGGATAAAATGTTTTTTTTAATATTATCAAAAATATTTTATCAGCTGATCACTTTTTGATATACTATATTGAAATCTAGATAATTGAAATACAGTTCCATTTGGGTTTCAATTTTAACTTTCACAACAAAGTTACCATAAGAAAAAGTGTGTCCCATCCGAGAAGGAGTAATGTTGTTTACAAAATTTTATGCTAAACTTGACCTANTTTTCTCAAAAATTTTTAATAATCAGTTTTTCCCAAACCATTAAAGCATTGCTCCTCTTGCAAAATATGCCATATTTGGGTCAAAGTGTTGAAATTGCTACCTTGAACTTTGAAATGAATTATCTCGGTTCCTATAAGAGGTATCAAAATCATTGAAACTGATATATTGTTTATCATAACATCACCTATATTTCAGTTGACAGTTTTTGACATCTTTCAAAGGAACCGAGATAATTGAGCTCAAAGTGCAATTAAGTGGCGACGTTCCATGCCTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCATTTCTTTCCTTGTAGAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTGTAAACAACATTACTCCTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GCATTTCTTTCCTTGTAGAAAGTTCTGTGGACAATTTTTAAGTTTTCGTAAGACATCGAAATTCTATCAAGGGATAAAATGTTTTTTTTAATATTATCAAAAATATTTTATCAGCTGATCACTTTTTGATATACTATATTGAAATCTAGATAATTGAAATACAGTTCCATTTGGGTTTCAATTTTAACTTTCACAACAAAGTTACCATAAGAAAAAGTGTGTCCCATCCGAGAAGGAGTAATGTTGTTTACAA</canonical_amplicon>
		<polymorphic_amplicon>GCATTTCTTTCCTTGTAGAAAGTTCTGTGGACAATTTTTAAGTTTTCGTAAGAYATCGAAATTCTATCAAGGGATAAAATGTTTTTTTTAATATTATCAAAAATATTTTATCAGCTGATCACTTTTTGATATACTATATTGAAATCTAGATAATTGAAATACAGTTCCATTTGGGTTTCAATTTTAACTTTCACAACAAAGTTACCATAAGAAAAAGTGTGTCCCATCCGAGAAGGAGTAATGTTGTTTACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5265</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>108923</contig_pos>
        <strand>+</strand>
        <context>TGGRCAATTT[C/T]TAAGTTTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCGAGTTTTTCGCATTTCTTTCCTTGTAGAAAGTTCTGTGGACAATTT</left_flank>
        <right_flank>TAAGTTTTCGTAAGACATCGAAATTCTATCAAGGGATAAAATGTTTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTAAAAGAATCTTGCTCTTTTCAAACACAATTTTCAACACATGTTTCCTGTCAAATCACTTGTCATTTTCCTAACCACAAATCAATCTTTTCTCGCAAAAAAATCACATTTTCTCCAGAAAGATGAACTTCCAAGCACCAAGACGACATCAGTACTCAAAGGACAACAGTGAAATTGATGAGGAGCGGAGGTAAAACGAAGAATATGACAGCAAAAGATATCAAAGTGTAATACTAAATTCTCTTGGGAGCGGATGATCCATTCCACGTACTTTAGGTTGTGTCCTCCTATTCTCCTATTCTTCTCTTTCTCTTTCCGGAGAACATAATTTGGTTAGATGTCGTCTCGAAGAAATAGTATTCGAGTTTGAATGACACAGAGTAATGCACATCTTGGACAGATTGCTTTCCACCCAAATCCTTTTCTCCACCTTTTTTGTTTTTTTTGTTTCGAGTTTTTCGCATTTCTTTCCTTGTAGAAAGTTCTGTGGACAATTTTTAAGTTTTCGTAAGACATCGAAATTCTATCAAGGGATAAAATGTTTTTTTTAATATTATCAAAAATATTTTATCAGCTGATCACTTTTTGATATACTATATTGAAATCTAGATAATTGAAATACAGTTCCATTTGGGTTTCAATTTTAACTTTCACAACAAAGTTACCATAAGAAAAAGTGTGTCCCATCCGAGAAGGAGTAATGTTGTTTACAAAATTTTATGCTAAACTTGACCTANTTTTCTCAAAAATTTTTAATAATCAGTTTTTCCCAAACCATTAAAGCATTGCTCCTCTTGCAAAATATGCCATATTTGGGTCAAAGTGTTGAAATTGCTACCTTGAACTTTGAAATGAATTATCTCGGTTCCTATAAGAGGTATCAAAATCATTGAAACTGATATATTGTTTATCATAACATCACCTATATTTCAGTTGACAGTTTTTGACATCTTTCAAAGGAACCGAGATAATTGAGCTCAAAGTGCAATTAAGTGGCG</canonical>
            <polymorphic>TTTTAAAAGAATCTTGCTCTTTTCAAACACAATTTTCAACACATGTTTCCTGTCAAATCACTTGTCATTTTCCTAACCACAAATCAATCTTTTCTCGCAAAAAAATCACATTTTCTCCAGAAAGATGAACTTCCAAGCACCAAGACGACATCAGTACTCAAAGGACAACAGTGAAATTGATGAGGAGCGGAGGTAAAACGAAGAATATGACAGCAAAAGATATCAAAGTGTAATACTAAATTCTCTTGGGAGCGGATGATCCATTCCACGTACTTTAGGTTGTGTCCTCCTATTCTCCTATTCTTCTCTTTCTCTTTCCGGAGAACATAATTTGGTTAGATGTCGTCTCGAAGAAATAGTATTCGAGTTTGAATGACACAGAGTAATGCACATCTTGGACAGATTGCTTTCCACCCAAATCCTTTTCTCCACCTTTTTTGTTTTTTTTGTTTCGAGTTTTTCGCATTTCTTTCCTTGTAGAAAGTTCTGTGGACAATTTYTAAGTTTTCGTAAGACATCGAAATTCTATCAAGGGATAAAATGTTTTTTTTAATATTATCAAAAATATTTTATCAGCTGATCACTTTTTGATATACTATATTGAAATCTAGATAATTGAAATACAGTTCCATTTGGGTTTCAATTTTAACTTTCACAACAAAGTTACCATAAGAAAAAGTGTGTCCCATCCGAGAAGGAGTAATGTTGTTTACAAAATTTTATGCTAAACTTGACCTANTTTTCTCAAAAATTTTTAATAATCAGTTTTTCCCAAACCATTAAAGCATTGCTCCTCTTGCAAAATATGCCATATTTGGGTCAAAGTGTTGAAATTGCTACCTTGAACTTTGAAATGAATTATCTCGGTTCCTATAAGAGGTATCAAAATCATTGAAACTGATATATTGTTTATCATAACATCACCTATATTTCAGTTGACAGTTTTTGACATCTTTCAAAGGAACCGAGATAATTGAGCTCAAAGTGCAATTAAGTGGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>497 211 109 96 50 25 9 3</canonical_bands>
                <polymorphic_bands>547 211 109 96 25 9 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCCTTTTCTCCACCTTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTTTGTTGTGAAAGTTAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAATCCTTTTCTCCACCTTTTTTGTTTTTTTTGTTTCGAGTTTTTCGCATTTCTTTCCTTGTAGAAAGTTCTGTGGACAATTTTTAAGTTTTCGTAAGACATCGAAATTCTATCAAGGGATAAAATGTTTTTTTTAATATTATCAAAAATATTTTATCAGCTGATCACTTTTTGATATACTATATTGAAATCTAGATAATTGAAATACAGTTCCATTTGGGTTTCAATTTTAACTTTCACAACAAAGT</canonical_amplicon>
		<polymorphic_amplicon>AAATCCTTTTCTCCACCTTTTTTGTTTTTTTTGTTTCGAGTTTTTCGCATTTCTTTCCTTGTAGAAAGTTCTGTGGACAATTTYTAAGTTTTCGTAAGACATCGAAATTCTATCAAGGGATAAAATGTTTTTTTTAATATTATCAAAAATATTTTATCAGCTGATCACTTTTTGATATACTATATTGAAATCTAGATAATTGAAATACAGTTCCATTTGGGTTTCAATTTTAACTTTCACAACAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5266</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>108916</contig_pos>
        <strand>+</strand>
        <context>AGTTCTGTGG[A/G]CAATTTYTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTGTTTCGAGTTTTTCGCATTTCTTTCCTTGTAGAAAGTTCTGTGG</left_flank>
        <right_flank>CAATTTTTAAGTTTTCGTAAGACATCGAAATTCTATCAAGGGATAAAATG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACATTTTTTAAAAGAATCTTGCTCTTTTCAAACACAATTTTCAACACATGTTTCCTGTCAAATCACTTGTCATTTTCCTAACCACAAATCAATCTTTTCTCGCAAAAAAATCACATTTTCTCCAGAAAGATGAACTTCCAAGCACCAAGACGACATCAGTACTCAAAGGACAACAGTGAAATTGATGAGGAGCGGAGGTAAAACGAAGAATATGACAGCAAAAGATATCAAAGTGTAATACTAAATTCTCTTGGGAGCGGATGATCCATTCCACGTACTTTAGGTTGTGTCCTCCTATTCTCCTATTCTTCTCTTTCTCTTTCCGGAGAACATAATTTGGTTAGATGTCGTCTCGAAGAAATAGTATTCGAGTTTGAATGACACAGAGTAATGCACATCTTGGACAGATTGCTTTCCACCCAAATCCTTTTCTCCACCTTTTTTGTTTTTTTTGTTTCGAGTTTTTCGCATTTCTTTCCTTGTAGAAAGTTCTGTGGACAATTTTTAAGTTTTCGTAAGACATCGAAATTCTATCAAGGGATAAAATGTTTTTTTTAATATTATCAAAAATATTTTATCAGCTGATCACTTTTTGATATACTATATTGAAATCTAGATAATTGAAATACAGTTCCATTTGGGTTTCAATTTTAACTTTCACAACAAAGTTACCATAAGAAAAAGTGTGTCCCATCCGAGAAGGAGTAATGTTGTTTACAAAATTTTATGCTAAACTTGACCTANTTTTCTCAAAAATTTTTAATAATCAGTTTTTCCCAAACCATTAAAGCATTGCTCCTCTTGCAAAATATGCCATATTTGGGTCAAAGTGTTGAAATTGCTACCTTGAACTTTGAAATGAATTATCTCGGTTCCTATAAGAGGTATCAAAATCATTGAAACTGATATATTGTTTATCATAACATCACCTATATTTCAGTTGACAGTTTTTGACATCTTTCAAAGGAACCGAGATAATTGAGCTCAAAGTGCAATTA</canonical>
            <polymorphic>TTACATTTTTTAAAAGAATCTTGCTCTTTTCAAACACAATTTTCAACACATGTTTCCTGTCAAATCACTTGTCATTTTCCTAACCACAAATCAATCTTTTCTCGCAAAAAAATCACATTTTCTCCAGAAAGATGAACTTCCAAGCACCAAGACGACATCAGTACTCAAAGGACAACAGTGAAATTGATGAGGAGCGGAGGTAAAACGAAGAATATGACAGCAAAAGATATCAAAGTGTAATACTAAATTCTCTTGGGAGCGGATGATCCATTCCACGTACTTTAGGTTGTGTCCTCCTATTCTCCTATTCTTCTCTTTCTCTTTCCGGAGAACATAATTTGGTTAGATGTCGTCTCGAAGAAATAGTATTCGAGTTTGAATGACACAGAGTAATGCACATCTTGGACAGATTGCTTTCCACCCAAATCCTTTTCTCCACCTTTTTTGTTTTTTTTGTTTCGAGTTTTTCGCATTTCTTTCCTTGTAGAAAGTTCTGTGGRCAATTTTTAAGTTTTCGTAAGACATCGAAATTCTATCAAGGGATAAAATGTTTTTTTTAATATTATCAAAAATATTTTATCAGCTGATCACTTTTTGATATACTATATTGAAATCTAGATAATTGAAATACAGTTCCATTTGGGTTTCAATTTTAACTTTCACAACAAAGTTACCATAAGAAAAAGTGTGTCCCATCCGAGAAGGAGTAATGTTGTTTACAAAATTTTATGCTAAACTTGACCTANTTTTCTCAAAAATTTTTAATAATCAGTTTTTCCCAAACCATTAAAGCATTGCTCCTCTTGCAAAATATGCCATATTTGGGTCAAAGTGTTGAAATTGCTACCTTGAACTTTGAAATGAATTATCTCGGTTCCTATAAGAGGTATCAAAATCATTGAAACTGATATATTGTTTATCATAACATCACCTATATTTCAGTTGACAGTTTTTGACATCTTTCAAAGGAACCGAGATAATTGAGCTCAAAGTGCAATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 227 219 56</canonical_bands>
                <polymorphic_bands>717 227 56</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCCTTTTCTCCACCTTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTTTGTTGTGAAAGTTAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAATCCTTTTCTCCACCTTTTTTGTTTTTTTTGTTTCGAGTTTTTCGCATTTCTTTCCTTGTAGAAAGTTCTGTGGACAATTTTTAAGTTTTCGTAAGACATCGAAATTCTATCAAGGGATAAAATGTTTTTTTTAATATTATCAAAAATATTTTATCAGCTGATCACTTTTTGATATACTATATTGAAATCTAGATAATTGAAATACAGTTCCATTTGGGTTTCAATTTTAACTTTCACAACAAAGT</canonical_amplicon>
		<polymorphic_amplicon>AAATCCTTTTCTCCACCTTTTTTGTTTTTTTTGTTTCGAGTTTTTCGCATTTCTTTCCTTGTAGAAAGTTCTGTGGRCAATTTTTAAGTTTTCGTAAGACATCGAAATTCTATCAAGGGATAAAATGTTTTTTTTAATATTATCAAAAATATTTTATCAGCTGATCACTTTTTGATATACTATATTGAAATCTAGATAATTGAAATACAGTTCCATTTGGGTTTCAATTTTAACTTTCACAACAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5267</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>108807</contig_pos>
        <strand>+</strand>
        <context>TGACACAGAG[A/T]AATGCACATC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTTAGATGTCGTCTCGAAGAAATAGTATTCGAGTTTGAATGACACAGAG</left_flank>
        <right_flank>AATGCACATCTTGGACAGATTGCTTTCCACCCAAATCCTTTTCTCCACCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGAATTTGCAAGGGTTTTTTGAGTACACAATGAATTTTCAAACAGGCAAATTTTCCAGAACTTTCGGAAATTCGGACTGAATTTGAAACTACTCGGAAAAGTTCTTCTTACATTTTTTAAAAGAATCTTGCTCTTTTCAAACACAATTTTCAACACATGTTTCCTGTCAAATCACTTGTCATTTTCCTAACCACAAATCAATCTTTTCTCGCAAAAAAATCACATTTTCTCCAGAAAGATGAACTTCCAAGCACCAAGACGACATCAGTACTCAAAGGACAACAGTGAAATTGATGAGGAGCGGAGGTAAAACGAAGAATATGACAGCAAAAGATATCAAAGTGTAATACTAAATTCTCTTGGGAGCGGATGATCCATTCCACGTACTTTAGGTTGTGTCCTCCTATTCTCCTATTCTTCTCTTTCTCTTTCCGGAGAACATAATTTGGTTAGATGTCGTCTCGAAGAAATAGTATTCGAGTTTGAATGACACAGAGTAATGCACATCTTGGACAGATTGCTTTCCACCCAAATCCTTTTCTCCACCTTTTTTGTTTTTTTTGTTTCGAGTTTTTCGCATTTCTTTCCTTGTAGAAAGTTCTGTGGACAATTTTTAAGTTTTCGTAAGACATCGAAATTCTATCAAGGGATAAAATGTTTTTTTTAATATTATCAAAAATATTTTATCAGCTGATCACTTTTTGATATACTATATTGAAATCTAGATAATTGAAATACAGTTCCATTTGGGTTTCAATTTTAACTTTCACAACAAAGTTACCATAAGAAAAAGTGTGTCCCATCCGAGAAGGAGTAATGTTGTTTACAAAATTTTATGCTAAACTTGACCTANTTTTCTCAAAAATTTTTAATAATCAGTTTTTCCCAAACCATTAAAGCATTGCTCCTCTTGCAAAATATGCCATATTTGGGTCAAAGTGTTGAAATTGCTACCTTGAACTTTGAAATGAATTATCTCGGTTCCTATAAGAGGTATC</canonical>
            <polymorphic>TAAGAATTTGCAAGGGTTTTTTGAGTACACAATGAATTTTCAAACAGGCAAATTTTCCAGAACTTTCGGAAATTCGGACTGAATTTGAAACTACTCGGAAAAGTTCTTCTTACATTTTTTAAAAGAATCTTGCTCTTTTCAAACACAATTTTCAACACATGTTTCCTGTCAAATCACTTGTCATTTTCCTAACCACAAATCAATCTTTTCTCGCAAAAAAATCACATTTTCTCCAGAAAGATGAACTTCCAAGCACCAAGACGACATCAGTACTCAAAGGACAACAGTGAAATTGATGAGGAGCGGAGGTAAAACGAAGAATATGACAGCAAAAGATATCAAAGTGTAATACTAAATTCTCTTGGGAGCGGATGATCCATTCCACGTACTTTAGGTTGTGTCCTCCTATTCTCCTATTCTTCTCTTTCTCTTTCCGGAGAACATAATTTGGTTAGATGTCGTCTCGAAGAAATAGTATTCGAGTTTGAATGACACAGAGWAATGCACATCTTGGACAGATTGCTTTCCACCCAAATCCTTTTCTCCACCTTTTTTGTTTTTTTTGTTTCGAGTTTTTCGCATTTCTTTCCTTGTAGAAAGTTCTGTGGACAATTTTTAAGTTTTCGTAAGACATCGAAATTCTATCAAGGGATAAAATGTTTTTTTTAATATTATCAAAAATATTTTATCAGCTGATCACTTTTTGATATACTATATTGAAATCTAGATAATTGAAATACAGTTCCATTTGGGTTTCAATTTTAACTTTCACAACAAAGTTACCATAAGAAAAAGTGTGTCCCATCCGAGAAGGAGTAATGTTGTTTACAAAATTTTATGCTAAACTTGACCTANTTTTCTCAAAAATTTTTAATAATCAGTTTTTCCCAAACCATTAAAGCATTGCTCCTCTTGCAAAATATGCCATATTTGGGTCAAAGTGTTGAAATTGCTACCTTGAACTTTGAAATGAATTATCTCGGTTCCTATAAGAGGTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGTAAAACGAAGAATATGACA</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGTGGAGAAAAGGATTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAGGTAAAACGAAGAATATGACAGCAAAAGATATCAAAGTGTAATACTAAATTCTCTTGGGAGCGGATGATCCATTCCACGTACTTTAGGTTGTGTCCTCCTATTCTCCTATTCTTCTCTTTCTCTTTCCGGAGAACATAATTTGGTTAGATGTCGTCTCGAAGAAATAGTATTCGAGTTTGAATGACACAGAGTAATGCACATCTTGGACAGATTGCTTTCCACCCAAATCCTTTTCTCCACCTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAGGTAAAACGAAGAATATGACAGCAAAAGATATCAAAGTGTAATACTAAATTCTCTTGGGAGCGGATGATCCATTCCACGTACTTTAGGTTGTGTCCTCCTATTCTCCTATTCTTCTCTTTCTCTTTCCGGAGAACATAATTTGGTTAGATGTCGTCTCGAAGAAATAGTATTCGAGTTTGAATGACACAGAGWAATGCACATCTTGGACAGATTGCTTTCCACCCAAATCCTTTTCTCCACCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5268</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>108592</contig_pos>
        <strand>+</strand>
        <context>CAAAGGACAA[A/C]AGTGAAATTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAAAGATGAACTTCCAAGCACCAAGACGACATCAGTACTCAAAGGACAA</left_flank>
        <right_flank>AGTGAAATTGATGAGGAGCGGAGGTAAAACGAAGAATATGACAGCAAAAG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCGAAAATGTTCTAAATGTCAGCCCTATATGGTCATTGTGAGCTTAGTTATCTCGGCTCCTATGAGAAATATCAACAACCTGCTTACTGATAAAATATAGGTGATATTATAGGAAGTATTAAATTTGTTGAAAACTTTTTGATATCTTTCAAAAAACCGAGATAGTTGAGCTGAAAAAAAAAGTAAGGCTGGACTCCTATTAGAGCATTTACCGTAAGAATTTGCAAGGGTTTTTTGAGTACACAATGAATTTTCAAACAGGCAAATTTTCCAGAACTTTCGGAAATTCGGACTGAATTTGAAACTACTCGGAAAAGTTCTTCTTACATTTTTTAAAAGAATCTTGCTCTTTTCAAACACAATTTTCAACACATGTTTCCTGTCAAATCACTTGTCATTTTCCTAACCACAAATCAATCTTTTCTCGCAAAAAAATCACATTTTCTCCAGAAAGATGAACTTCCAAGCACCAAGACGACATCAGTACTCAAAGGACAACAGTGAAATTGATGAGGAGCGGAGGTAAAACGAAGAATATGACAGCAAAAGATATCAAAGTGTAATACTAAATTCTCTTGGGAGCGGATGATCCATTCCACGTACTTTAGGTTGTGTCCTCCTATTCTCCTATTCTTCTCTTTCTCTTTCCGGAGAACATAATTTGGTTAGATGTCGTCTCGAAGAAATAGTATTCGAGTTTGAATGACACAGAGTAATGCACATCTTGGACAGATTGCTTTCCACCCAAATCCTTTTCTCCACCTTTTTTGTTTTTTTTGTTTCGAGTTTTTCGCATTTCTTTCCTTGTAGAAAGTTCTGTGGACAATTTTTAAGTTTTCGTAAGACATCGAAATTCTATCAAGGGATAAAATGTTTTTTTTAATATTATCAAAAATATTTTATCAGCTGATCACTTTTTGATATACTATATTGAAATCTAGATAATTGAAATACAGTTCCATTTGGGTTTCAATTTTAACTTTCACAACAAAGTTACCA</canonical>
            <polymorphic>TCCGAAAATGTTCTAAATGTCAGCCCTATATGGTCATTGTGAGCTTAGTTATCTCGGCTCCTATGAGAAATATCAACAACCTGCTTACTGATAAAATATAGGTGATATTATAGGAAGTATTAAATTTGTTGAAAACTTTTTGATATCTTTCAAAAAACCGAGATAGTTGAGCTGAAAAAAAAAGTAAGGCTGGACTCCTATTAGAGCATTTACCGTAAGAATTTGCAAGGGTTTTTTGAGTACACAATGAATTTTCAAACAGGCAAATTTTCCAGAACTTTCGGAAATTCGGACTGAATTTGAAACTACTCGGAAAAGTTCTTCTTACATTTTTTAAAAGAATCTTGCTCTTTTCAAACACAATTTTCAACACATGTTTCCTGTCAAATCACTTGTCATTTTCCTAACCACAAATCAATCTTTTCTCGCAAAAAAATCACATTTTCTCCAGAAAGATGAACTTCCAAGCACCAAGACGACATCAGTACTCAAAGGACAAMAGTGAAATTGATGAGGAGCGGAGGTAAAACGAAGAATATGACAGCAAAAGATATCAAAGTGTAATACTAAATTCTCTTGGGAGCGGATGATCCATTCCACGTACTTTAGGTTGTGTCCTCCTATTCTCCTATTCTTCTCTTTCTCTTTCCGGAGAACATAATTTGGTTAGATGTCGTCTCGAAGAAATAGTATTCGAGTTTGAATGACACAGAGTAATGCACATCTTGGACAGATTGCTTTCCACCCAAATCCTTTTCTCCACCTTTTTTGTTTTTTTTGTTTCGAGTTTTTCGCATTTCTTTCCTTGTAGAAAGTTCTGTGGACAATTTTTAAGTTTTCGTAAGACATCGAAATTCTATCAAGGGATAAAATGTTTTTTTTAATATTATCAAAAATATTTTATCAGCTGATCACTTTTTGATATACTATATTGAAATCTAGATAATTGAAATACAGTTCCATTTGGGTTTCAATTTTAACTTTCACAACAAAGTTACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>455 287 214 44</canonical_bands>
                <polymorphic_bands>742 214 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGAAAAGTTCTTCTTACATTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTTTGATATCTTTTGCTGTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGGAAAAGTTCTTCTTACATTTTTTAAAAGAATCTTGCTCTTTTCAAACACAATTTTCAACACATGTTTCCTGTCAAATCACTTGTCATTTTCCTAACCACAAATCAATCTTTTCTCGCAAAAAAATCACATTTTCTCCAGAAAGATGAACTTCCAAGCACCAAGACGACATCAGTACTCAAAGGACAACAGTGAAATTGATGAGGAGCGGAGGTAAAACGAAGAATATGACAGCAAAAGATATCAAAGT</canonical_amplicon>
		<polymorphic_amplicon>CGGAAAAGTTCTTCTTACATTTTTTAAAAGAATCTTGCTCTTTTCAAACACAATTTTCAACACATGTTTCCTGTCAAATCACTTGTCATTTTCCTAACCACAAATCAATCTTTTCTCGCAAAAAAATCACATTTTCTCCAGAAAGATGAACTTCCAAGCACCAAGACGACATCAGTACTCAAAGGACAAMAGTGAAATTGATGAGGAGCGGAGGTAAAACGAAGAATATGACAGCAAAAGATATCAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5269</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>120465</contig_pos>
        <strand>+</strand>
        <context>GTAAATGCCA[A/C]AAAGTGATCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGTGACTGATAGTCCTGCGAGCGTTTTAGCTCATTTGTCGTAAATGCCA</left_flank>
        <right_flank>AAAGTGATCTTCGTCTAAACTATTTATCATAATATCGGAAACATTTTATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAGGCGCTGCATACAGAACCAACGACCACACAAAAGTTATGGTTTCCCATGACATTCGTTCCCCATAACCCCCTCTCATCCTTCATTTTCTCTCTTTTTTTGAACCAACAGCTGTGTCAACTGATATGATGAGGAGAGGGCGGATATGTATGTATTTTTGAAACGATGATTGAGGTGAAACTCGCTTCTATTTTCTATCCATTCAAACACCCAGAAACACCTCTCAAATAACATTTTTTCGTGGTTTTTCCCTCAACAGAGGATACGAGTTTCCGTTTTTTTTCCGTGTTGTTGTCACTCAAAAATAGTGTTTATTGATGAACAAGTTAGGTTTCTGAGAAACTTCTAGTTACTTTCTTTTAATTTTTTTAAATTTATCTTCTTTCCTGTTCCTAGACGAACATAATTTCTAACTCATTTGTTTAATTTGTAACACATTGATTTTATAAGTGACTGATAGTCCTGCGAGCGTTTTAGCTCATTTGTCGTAAATGCCACAAAGTGATCTTCGTCTAAACTATTTATCATAATATCGGAAACATTTTATCAGTTGACACATTCTTGATATCTCTCATAGATGACGAGATAATGGAGCTCAGTCTTTACTGTGTGGGGCCCTTCTAATACATTTTTCACGGTATATGACATCGTTCAGCATCAAGATTCCTTCTTGAATTTTTCCTGTGTTCATTGGATTTTTTACAATAACATCCAAATCAATGAAAAATAACCTGAAATTATCTCCCATGGAGTATACAGCTGTACAGATTGTTATTCAAAATCAGTCTAGAAAATTCACAGATTTCCGTATACGAGTTATGTTGTTGTGATATTAATGAGAATCTATTGTTTTGGCAGTATACACTTGTCTATCTATAGTTTTTCGTTTGATCATATATTCTTCAGGGAGGTTTTTAAACCAGGTCCGGCCTGTTATAACTGTTAAATCTTTTGAACCTAATTCCGTAGTATTTTTCTGGCACAAAAAACCAGAGCAT</canonical>
            <polymorphic>CAGAGGCGCTGCATACAGAACCAACGACCACACAAAAGTTATGGTTTCCCATGACATTCGTTCCCCATAACCCCCTCTCATCCTTCATTTTCTCTCTTTTTTTGAACCAACAGCTGTGTCAACTGATATGATGAGGAGAGGGCGGATATGTATGTATTTTTGAAACGATGATTGAGGTGAAACTCGCTTCTATTTTCTATCCATTCAAACACCCAGAAACACCTCTCAAATAACATTTTTTCGTGGTTTTTCCCTCAACAGAGGATACGAGTTTCCGTTTTTTTTCCGTGTTGTTGTCACTCAAAAATAGTGTTTATTGATGAACAAGTTAGGTTTCTGAGAAACTTCTAGTTACTTTCTTTTAATTTTTTTAAATTTATCTTCTTTCCTGTTCCTAGACGAACATAATTTCTAACTCATTTGTTTAATTTGTAACACATTGATTTTATAAGTGACTGATAGTCCTGCGAGCGTTTTAGCTCATTTGTCGTAAATGCCAMAAAGTGATCTTCGTCTAAACTATTTATCATAATATCGGAAACATTTTATCAGTTGACACATTCTTGATATCTCTCATAGATGACGAGATAATGGAGCTCAGTCTTTACTGTGTGGGGCCCTTCTAATACATTTTTCACGGTATATGACATCGTTCAGCATCAAGATTCCTTCTTGAATTTTTCCTGTGTTCATTGGATTTTTTACAATAACATCCAAATCAATGAAAAATAACCTGAAATTATCTCCCATGGAGTATACAGCTGTACAGATTGTTATTCAAAATCAGTCTAGAAAATTCACAGATTTCCGTATACGAGTTATGTTGTTGTGATATTAATGAGAATCTATTGTTTTGGCAGTATACACTTGTCTATCTATAGTTTTTCGTTTGATCATATATTCTTCAGGGAGGTTTTTAAACCAGGTCCGGCCTGTTATAACTGTTAAATCTTTTGAACCTAATTCCGTAGTATTTTTCTGGCACAAAAAACCAGAGCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACNNNGTG</site>
                <isoschizomers>
                    <enzyme>AdeI</enzyme>
                    <enzyme>DraIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>125 118 112 86 61 54 52 51 45 45 35 32 31 30 24 23 17 16 13 10 9 7 2 2</canonical_bands>
                <polymorphic_bands>125 118 112 86 61 54 52 52 51 45 35 32 31 30 24 23 17 16 13 10 9 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTAACACATTGATTTTATAAGTGA</pcr_primer_p1>
		<pcr_primer_p2>AATTCAAGAAGGAATCTTGATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGTAACACATTGATTTTATAAGTGACTGATAGTCCTGCGAGCGTTTTAGCTCATTTGTCGTAAATGCCACAAAGTGATCTTCGTCTAAACTATTTATCATAATATCGGAAACATTTTATCAGTTGACACATTCTTGATATCTCTCATAGATGACGAGATAATGGAGCTCAGTCTTTACTGTGTGGGGCCCTTCTAATACATTTTTCACGGTATATGACATCGTTCAGCATCAAGATTCCTTCTTGAATT</canonical_amplicon>
		<polymorphic_amplicon>TTGTAACACATTGATTTTATAAGTGACTGATAGTCCTGCGAGCGTTTTAGCTCATTTGTCGTAAATGCCAMAAAGTGATCTTCGTCTAAACTATTTATCATAATATCGGAAACATTTTATCAGTTGACACATTCTTGATATCTCTCATAGATGACGAGATAATGGAGCTCAGTCTTTACTGTGTGGGGCCCTTCTAATACATTTTTCACGGTATATGACATCGTTCAGCATCAAGATTCCTTCTTGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5270</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>124956</contig_pos>
        <strand></strand>
        <context>TGTTTTACTT[A/T]TCATTTTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTCTACGAAAGATAAAAAAAAGGATGAGATTAGTGTATTGTTTTACTT</left_flank>
        <right_flank>TCATTTTTGAAGTGTTCACTTTTTTATTTGATGAGATCAGATTATGGATT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTCTAGAAGCCACGTGTACATTCAGGTTTCAGATATCATTTTTACGGTATTCAAGAGATACATCAGTGACCGAAAAAGAAATGACGATGTTAATTGGAAAAGGGTGTCATCTCTGGGAAACTGAACACCGTAAAACCTGTATTACTAGAAGTTAGAAGAGCAGGTATTGTTCCAAGGGGCCTCCGGAGAGTTCGTTCTTTTACAGGGACCCTTCAATCAGAGGGAGGTCTCGTTTTTTCTGGGCTAAAATCCATGAAATCAAAATTGAATTTTTGAGCAAAACGAGAAAACGTACAGAAGATTTTTAAGCTTGAATAACACATTTTGAAACTGGTCCTTCTATATTCCAAGCCCCTCTTGGAGAGCCCTTCTATTAGGAGGTCCTTCTATTGAAGAGGTTTTCCTTATACTTTGACTGTTTTTCTGAAGACTTTATTGGTAGACTATTTTTCTACGAAAGATAAAAAAAAGGATGAGATTAGTGTATTGTTTTACTTATCATTTTTGAAGTGTTCACTTTTTTATTTGATGAGATCAGATTATGGATTCAGGCTTTTTAGTCTAAGAGTTGAGATTTTGAACATTTAAATTTTTCCTGTACTGCTTCCAATAAATTCAATTTTATGTAAATTCGAAATCTTTAAAAAATGTAACTCAGAGAACAGTATAAAAGATTGACAGATCATACCTTTTCTTGGGATTAGAACTTTGAAATTTTGGGAGATGTTGAGAATTGGATTTTTTTTAATTTTTGAGAGAAACTCTGACAACTTTCAGGAATAAAGATTTTTTAGAAATACTTTTTTTCAAAATTCTCCTTTTTCATAGATTCTATCTTCCTAGACCCATAATTTTTGATCCCTAGATTAGTGACGGATTTCTTATTCATATTAATACGAACTGTTTTTTTCCAGATTTTCTGTCTGACTTGTCTTCCTGAACTATCCAAAACACGACTAATGTAAATTATATATTATATAATTTAAAAAATTTATAAG</canonical>
            <polymorphic>TAGTCTAGAAGCCACGTGTACATTCAGGTTTCAGATATCATTTTTACGGTATTCAAGAGATACATCAGTGACCGAAAAAGAAATGACGATGTTAATTGGAAAAGGGTGTCATCTCTGGGAAACTGAACACCGTAAAACCTGTATTACTAGAAGTTAGAAGAGCAGGTATTGTTCCAAGGGGCCTCCGGAGAGTTCGTTCTTTTACAGGGACCCTTCAATCAGAGGGAGGTCTCGTTTTTTCTGGGCTAAAATCCATGAAATCAAAATTGAATTTTTGAGCAAAACGAGAAAACGTACAGAAGATTTTTAAGCTTGAATAACACATTTTGAAACTGGTCCTTCTATATTCCAAGCCCCTCTTGGAGAGCCCTTCTATTAGGAGGTCCTTCTATTGAAGAGGTTTTCCTTATACTTTGACTGTTTTTCTGAAGACTTTATTGGTAGACTATTTTTCTACGAAAGATAAAAAAAAGGATGAGATTAGTGTATTGTTTTACTTWTCATTTTTGAAGTGTTCACTTTTTTATTTGATGAGATCAGATTATGGATTCAGGCTTTTTAGTCTAAGAGTTGAGATTTTGAACATTTAAATTTTTCCTGTACTGCTTCCAATAAATTCAATTTTATGTAAATTCGAAATCTTTAAAAAATGTAACTCAGAGAACAGTATAAAAGATTGACAGATCATACCTTTTCTTGGGATTAGAACTTTGAAATTTTGGGAGATGTTGAGAATTGGATTTTTTTTAATTTTTGAGAGAAACTCTGACAACTTTCAGGAATAAAGATTTTTTAGAAATACTTTTTTTCAAAATTCTCCTTTTTCATAGATTCTATCTTCCTAGACCCATAATTTTTGATCCCTAGATTAGTGACGGATTTCTTATTCATATTAATACGAACTGTTTTTTTCCAGATTTTCTGTCTGACTTGTCTTCCTGAACTATCCAAAACACGACTAATGTAAATTATATATTATATAATTTAAAAAATTTATAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTGAATAACACATTTTGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TAAAAAGCCTGAATCCATAATCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCTTGAATAACACATTTTGAAACTGGTCCTTCTATATTCCAAGCCCCTCTTGGAGAGCCCTTCTATTAGGAGGTCCTTCTATTGAAGAGGTTTTCCTTATACTTTGACTGTTTTTCTGAAGACTTTATTGGTAGACTATTTTTCTACGAAAGATAAAAAAAAGGATGAGATTAGTGTATTGTTTTACTTATCATTTTTGAAGTGTTCACTTTTTTATTTGATGAGATCAGATTATGGATTCAGGCTTTTTA</canonical_amplicon>
		<polymorphic_amplicon>GCTTGAATAACACATTTTGAAACTGGTCCTTCTATATTCCAAGCCCCTCTTGGAGAGCCCTTCTATTAGGAGGTCCTTCTATTGAAGAGGTTTTCCTTATACTTTGACTGTTTTTCTGAAGACTTTATTGGTAGACTATTTTTCTACGAAAGATAAAAAAAAGGATGAGATTAGTGTATTGTTTTACTTWTCATTTTTGAAGTGTTCACTTTTTTATTTGATGAGATCAGATTATGGATTCAGGCTTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5271</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>175348</contig_pos>
        <strand>+</strand>
        <context>ATGCCACTGA[C/T]GATAGACGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGGAGAACAGTGATTCGGATAAGAAGCACTCGAACAAGGATGCCACTGA</left_flank>
        <right_flank>GATAGACGCAATGAGTTTATTCACAAGGGATTGGATGGAAGAATGCAGCA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCCAATATCGCTGCATCGCAGTACCAGAAGGGTCTCAATGGAATGATGAGCAATGAAACCACTGATATCGGAAGTTCCTTCAACTCATCCGATGATGAGTCCAACCAATTCAACCATCTCCACCAGATAGCTGCCAATGGATCGACCATCGATCACAACAAGGATAGCAGACAAGTCGCTTCCTCTCTCAACAATCAAAACCGTCTCAAGAGTTCCATGGTTTCTGACGATGGAGCTGGACATAAGATCAATGAACAGACTGAAGAGGCTTCGGATCTTCATGACGCTGGAAGTGCTAGCAGTGATATGGACCAGAAGAGGGTTGTGAACAAGGACGGAACTTCTCAGATTTCCAATGACAGCAGCAACCAAACAGCAGTTGAGCATAGCGATTCGGAGAAGAAGAAGCATCACAGAGGAGAACAGAGAGCTGATGGATCATTCATCGAGGAGAACAGTGATTCGGATAAGAAGCACTCGAACAAGGATGCCACTGATGATAGACGCAATGAGTTTATTCACAAGGGATTGGATGGAAGAATGCAGCATGAAATTAAGACCAGCAATCTCCAGAATCATAAGAATGATACGGTAATCAAAGAGGGAATTATAGTACTGATAAGAATAATTTTCAGGATGAGGTTGTCAACTCTAGCCTCCATGCCAAGTCTGCCAATGGAACCGAGATCAATGACGTTCAACACTCGGATGTTTCTCTTTCTGATCTTCAGGAATCTCAAGCCGCCGCTAAGAATGCAGTACTGAAACTTGCTGACGGAAGCACTGTCATCAACAAGGATGAGAGTCATGTCAACCACGGAAAATCCAGAAACGACGCTGCAGCTTCCCACAAGAGAAATCAAACAAATGCTGATGGATCCAGTGCTAGTTTGGATATTGGATCAAATTCTCATACGGATTTGGAGACACGTGGCGAAGGAGGAAAGAAGGAGAGATATCAAGATCTTGGAACCGGAAAAGTTAGCTCAATGAGTCAA</canonical>
            <polymorphic>TCTCCAATATCGCTGCATCGCAGTACCAGAAGGGTCTCAATGGAATGATGAGCAATGAAACCACTGATATCGGAAGTTCCTTCAACTCATCCGATGATGAGTCCAACCAATTCAACCATCTCCACCAGATAGCTGCCAATGGATCGACCATCGATCACAACAAGGATAGCAGACAAGTCGCTTCCTCTCTCAACAATCAAAACCGTCTCAAGAGTTCCATGGTTTCTGACGATGGAGCTGGACATAAGATCAATGAACAGACTGAAGAGGCTTCGGATCTTCATGACGCTGGAAGTGCTAGCAGTGATATGGACCAGAAGAGGGTTGTGAACAAGGACGGAACTTCTCAGATTTCCAATGACAGCAGCAACCAAACAGCAGTTGAGCATAGCGATTCGGAGAAGAAGAAGCATCACAGAGGAGAACAGAGAGCTGATGGATCATTCATCGAGGAGAACAGTGATTCGGATAAGAAGCACTCGAACAAGGATGCCACTGAYGATAGACGCAATGAGTTTATTCACAAGGGATTGGATGGAAGAATGCAGCATGAAATTAAGACCAGCAATCTCCAGAATCATAAGAATGATACGGTAATCAAAGAGGGAATTATAGTACTGATAAGAATAATTTTCAGGATGAGGTTGTCAACTCTAGCCTCCATGCCAAGTCTGCCAATGGAACCGAGATCAATGACGTTCAACACTCGGATGTTTCTCTTTCTGATCTTCAGGAATCTCAAGCCGCCGCTAAGAATGCAGTACTGAAACTTGCTGACGGAAGCACTGTCATCAACAAGGATGAGAGTCATGTCAACCACGGAAAATCCAGAAACGACGCTGCAGCTTCCCACAAGAGAAATCAAACAAATGCTGATGGATCCAGTGCTAGTTTGGATATTGGATCAAATTCTCATACGGATTTGGAGACACGTGGCGAAGGAGGAAAGAAGGAGAGATATCAAGATCTTGGAACCGGAAAAGTTAGCTCAATGAGTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAGAAGAAGCATCACAGAG</pcr_primer_p1>
		<pcr_primer_p2>GACAACCTCATCCTGAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAGAAGAAGAAGCATCACAGAGGAGAACAGAGAGCTGATGGATCATTCATCGAGGAGAACAGTGATTCGGATAAGAAGCACTCGAACAAGGATGCCACTGATGATAGACGCAATGAGTTTATTCACAAGGGATTGGATGGAAGAATGCAGCATGAAATTAAGACCAGCAATCTCCAGAATCATAAGAATGATACGGTAATCAAAGAGGGAATTATAGTACTGATAAGAATAATTTTCAGGATGAGGTTGTC</canonical_amplicon>
		<polymorphic_amplicon>GAGAAGAAGAAGCATCACAGAGGAGAACAGAGAGCTGATGGATCATTCATCGAGGAGAACAGTGATTCGGATAAGAAGCACTCGAACAAGGATGCCACTGAYGATAGACGCAATGAGTTTATTCACAAGGGATTGGATGGAAGAATGCAGCATGAAATTAAGACCAGCAATCTCCAGAATCATAAGAATGATACGGTAATCAAAGAGGGAATTATAGTACTGATAAGAATAATTTTCAGGATGAGGTTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5272</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>175418</contig_pos>
        <strand>+</strand>
        <context>GACCAGCAAT[C/G]TCCAGAATCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCACAAGGGATTGGATGGAAGAATGCAGCATGAAATTAAGACCAGCAAT</left_flank>
        <right_flank>TCCAGAATCATAAGAATGATACGGTAATCAAAGAGGGAATTATAGTACTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGAAGTTCCTTCAACTCATCCGATGATGAGTCCAACCAATTCAACCATCTCCACCAGATAGCTGCCAATGGATCGACCATCGATCACAACAAGGATAGCAGACAAGTCGCTTCCTCTCTCAACAATCAAAACCGTCTCAAGAGTTCCATGGTTTCTGACGATGGAGCTGGACATAAGATCAATGAACAGACTGAAGAGGCTTCGGATCTTCATGACGCTGGAAGTGCTAGCAGTGATATGGACCAGAAGAGGGTTGTGAACAAGGACGGAACTTCTCAGATTTCCAATGACAGCAGCAACCAAACAGCAGTTGAGCATAGCGATTCGGAGAAGAAGAAGCATCACAGAGGAGAACAGAGAGCTGATGGATCATTCATCGAGGAGAACAGTGATTCGGATAAGAAGCACTCGAACAAGGATGCCACTGATGATAGACGCAATGAGTTTATTCACAAGGGATTGGATGGAAGAATGCAGCATGAAATTAAGACCAGCAATCTCCAGAATCATAAGAATGATACGGTAATCAAAGAGGGAATTATAGTACTGATAAGAATAATTTTCAGGATGAGGTTGTCAACTCTAGCCTCCATGCCAAGTCTGCCAATGGAACCGAGATCAATGACGTTCAACACTCGGATGTTTCTCTTTCTGATCTTCAGGAATCTCAAGCCGCCGCTAAGAATGCAGTACTGAAACTTGCTGACGGAAGCACTGTCATCAACAAGGATGAGAGTCATGTCAACCACGGAAAATCCAGAAACGACGCTGCAGCTTCCCACAAGAGAAATCAAACAAATGCTGATGGATCCAGTGCTAGTTTGGATATTGGATCAAATTCTCATACGGATTTGGAGACACGTGGCGAAGGAGGAAAGAAGGAGAGATATCAAGATCTTGGAACCGGAAAAGTTAGCTCAATGAGTCAAGGATACGAGAAGACTCAAGCGAAGGGAGGAGACAAGTCTTCGAGTCATGATAGTTCATTGACCAGTGACG</canonical>
            <polymorphic>CGGAAGTTCCTTCAACTCATCCGATGATGAGTCCAACCAATTCAACCATCTCCACCAGATAGCTGCCAATGGATCGACCATCGATCACAACAAGGATAGCAGACAAGTCGCTTCCTCTCTCAACAATCAAAACCGTCTCAAGAGTTCCATGGTTTCTGACGATGGAGCTGGACATAAGATCAATGAACAGACTGAAGAGGCTTCGGATCTTCATGACGCTGGAAGTGCTAGCAGTGATATGGACCAGAAGAGGGTTGTGAACAAGGACGGAACTTCTCAGATTTCCAATGACAGCAGCAACCAAACAGCAGTTGAGCATAGCGATTCGGAGAAGAAGAAGCATCACAGAGGAGAACAGAGAGCTGATGGATCATTCATCGAGGAGAACAGTGATTCGGATAAGAAGCACTCGAACAAGGATGCCACTGATGATAGACGCAATGAGTTTATTCACAAGGGATTGGATGGAAGAATGCAGCATGAAATTAAGACCAGCAATSTCCAGAATCATAAGAATGATACGGTAATCAAAGAGGGAATTATAGTACTGATAAGAATAATTTTCAGGATGAGGTTGTCAACTCTAGCCTCCATGCCAAGTCTGCCAATGGAACCGAGATCAATGACGTTCAACACTCGGATGTTTCTCTTTCTGATCTTCAGGAATCTCAAGCCGCCGCTAAGAATGCAGTACTGAAACTTGCTGACGGAAGCACTGTCATCAACAAGGATGAGAGTCATGTCAACCACGGAAAATCCAGAAACGACGCTGCAGCTTCCCACAAGAGAAATCAAACAAATGCTGATGGATCCAGTGCTAGTTTGGATATTGGATCAAATTCTCATACGGATTTGGAGACACGTGGCGAAGGAGGAAAGAAGGAGAGATATCAAGATCTTGGAACCGGAAAAGTTAGCTCAATGAGTCAAGGATACGAGAAGACTCAAGCGAAGGGAGGAGACAAGTCTTCGAGTCATGATAGTTCATTGACCAGTGACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAGAAGAAGCATCACAGAG</pcr_primer_p1>
		<pcr_primer_p2>GACAACCTCATCCTGAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAGAAGAAGAAGCATCACAGAGGAGAACAGAGAGCTGATGGATCATTCATCGAGGAGAACAGTGATTCGGATAAGAAGCACTCGAACAAGGATGCCACTGATGATAGACGCAATGAGTTTATTCACAAGGGATTGGATGGAAGAATGCAGCATGAAATTAAGACCAGCAATCTCCAGAATCATAAGAATGATACGGTAATCAAAGAGGGAATTATAGTACTGATAAGAATAATTTTCAGGATGAGGTTGTC</canonical_amplicon>
		<polymorphic_amplicon>GAGAAGAAGAAGCATCACAGAGGAGAACAGAGAGCTGATGGATCATTCATCGAGGAGAACAGTGATTCGGATAAGAAGCACTCGAACAAGGATGCCACTGATGATAGACGCAATGAGTTTATTCACAAGGGATTGGATGGAAGAATGCAGCATGAAATTAAGACCAGCAATSTCCAGAATCATAAGAATGATACGGTAATCAAAGAGGGAATTATAGTACTGATAAGAATAATTTTCAGGATGAGGTTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5273</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>175473</contig_pos>
        <strand>+</strand>
        <context>GTACTGATAA[A/G]AATAATTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATCATAAGAATGATACGGTAATCAAAGAGGGAATTATAGTACTGATAA</left_flank>
        <right_flank>AATAATTTTCAGGATGAGGTTGTCAACTCTAGCCTCCATGCCAAGTCTGC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGATAGCTGCCAATGGATCGACCATCGATCACAACAAGGATAGCAGACAAGTCGCTTCCTCTCTCAACAATCAAAACCGTCTCAAGAGTTCCATGGTTTCTGACGATGGAGCTGGACATAAGATCAATGAACAGACTGAAGAGGCTTCGGATCTTCATGACGCTGGAAGTGCTAGCAGTGATATGGACCAGAAGAGGGTTGTGAACAAGGACGGAACTTCTCAGATTTCCAATGACAGCAGCAACCAAACAGCAGTTGAGCATAGCGATTCGGAGAAGAAGAAGCATCACAGAGGAGAACAGAGAGCTGATGGATCATTCATCGAGGAGAACAGTGATTCGGATAAGAAGCACTCGAACAAGGATGCCACTGATGATAGACGCAATGAGTTTATTCACAAGGGATTGGATGGAAGAATGCAGCATGAAATTAAGACCAGCAATCTCCAGAATCATAAGAATGATACGGTAATCAAAGAGGGAATTATAGTACTGATAAGAATAATTTTCAGGATGAGGTTGTCAACTCTAGCCTCCATGCCAAGTCTGCCAATGGAACCGAGATCAATGACGTTCAACACTCGGATGTTTCTCTTTCTGATCTTCAGGAATCTCAAGCCGCCGCTAAGAATGCAGTACTGAAACTTGCTGACGGAAGCACTGTCATCAACAAGGATGAGAGTCATGTCAACCACGGAAAATCCAGAAACGACGCTGCAGCTTCCCACAAGAGAAATCAAACAAATGCTGATGGATCCAGTGCTAGTTTGGATATTGGATCAAATTCTCATACGGATTTGGAGACACGTGGCGAAGGAGGAAAGAAGGAGAGATATCAAGATCTTGGAACCGGAAAAGTTAGCTCAATGAGTCAAGGATACGAGAAGACTCAAGCGAAGGGAGGAGACAAGTCTTCGAGTCATGATAGTTCATTGACCAGTGACGGAAAGGGACACTTCGTGAAGAGCAACAATGCATCTGATTCTCATCATGTTATTGA</canonical>
            <polymorphic>CAGATAGCTGCCAATGGATCGACCATCGATCACAACAAGGATAGCAGACAAGTCGCTTCCTCTCTCAACAATCAAAACCGTCTCAAGAGTTCCATGGTTTCTGACGATGGAGCTGGACATAAGATCAATGAACAGACTGAAGAGGCTTCGGATCTTCATGACGCTGGAAGTGCTAGCAGTGATATGGACCAGAAGAGGGTTGTGAACAAGGACGGAACTTCTCAGATTTCCAATGACAGCAGCAACCAAACAGCAGTTGAGCATAGCGATTCGGAGAAGAAGAAGCATCACAGAGGAGAACAGAGAGCTGATGGATCATTCATCGAGGAGAACAGTGATTCGGATAAGAAGCACTCGAACAAGGATGCCACTGATGATAGACGCAATGAGTTTATTCACAAGGGATTGGATGGAAGAATGCAGCATGAAATTAAGACCAGCAATCTCCAGAATCATAAGAATGATACGGTAATCAAAGAGGGAATTATAGTACTGATAARAATAATTTTCAGGATGAGGTTGTCAACTCTAGCCTCCATGCCAAGTCTGCCAATGGAACCGAGATCAATGACGTTCAACACTCGGATGTTTCTCTTTCTGATCTTCAGGAATCTCAAGCCGCCGCTAAGAATGCAGTACTGAAACTTGCTGACGGAAGCACTGTCATCAACAAGGATGAGAGTCATGTCAACCACGGAAAATCCAGAAACGACGCTGCAGCTTCCCACAAGAGAAATCAAACAAATGCTGATGGATCCAGTGCTAGTTTGGATATTGGATCAAATTCTCATACGGATTTGGAGACACGTGGCGAAGGAGGAAAGAAGGAGAGATATCAAGATCTTGGAACCGGAAAAGTTAGCTCAATGAGTCAAGGATACGAGAAGACTCAAGCGAAGGGAGGAGACAAGTCTTCGAGTCATGATAGTTCATTGACCAGTGACGGAAAGGGACACTTCGTGAAGAGCAACAATGCATCTGATTCTCATCATGTTATTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACAGTGATTCGGATAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>GTGTTGAACGTCATTGATCTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GAACAGTGATTCGGATAAGAAGCACTCGAACAAGGATGCCACTGATGATAGACGCAATGAGTTTATTCACAAGGGATTGGATGGAAGAATGCAGCATGAAATTAAGACCAGCAATCTCCAGAATCATAAGAATGATACGGTAATCAAAGAGGGAATTATAGTACTGATAAGAATAATTTTCAGGATGAGGTTGTCAACTCTAGCCTCCATGCCAAGTCTGCCAATGGAACCGAGATCAATGACGTTCAACAC</canonical_amplicon>
		<polymorphic_amplicon>GAACAGTGATTCGGATAAGAAGCACTCGAACAAGGATGCCACTGATGATAGACGCAATGAGTTTATTCACAAGGGATTGGATGGAAGAATGCAGCATGAAATTAAGACCAGCAATCTCCAGAATCATAAGAATGATACGGTAATCAAAGAGGGAATTATAGTACTGATAARAATAATTTTCAGGATGAGGTTGTCAACTCTAGCCTCCATGCCAAGTCTGCCAATGGAACCGAGATCAATGACGTTCAACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5274</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>175558</contig_pos>
        <strand>+</strand>
        <context>TCAACACTCG[A/G]ATGTTTCTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCATGCCAAGTCTGCCAATGGAACCGAGATCAATGACGTTCAACACTCG</left_flank>
        <right_flank>ATGTTTCTCTTTCTGATCTTCAGGAATCTCAAGCCGCCGCTAAGAATGCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGTTCCATGGTTTCTGACGATGGAGCTGGACATAAGATCAATGAACAGACTGAAGAGGCTTCGGATCTTCATGACGCTGGAAGTGCTAGCAGTGATATGGACCAGAAGAGGGTTGTGAACAAGGACGGAACTTCTCAGATTTCCAATGACAGCAGCAACCAAACAGCAGTTGAGCATAGCGATTCGGAGAAGAAGAAGCATCACAGAGGAGAACAGAGAGCTGATGGATCATTCATCGAGGAGAACAGTGATTCGGATAAGAAGCACTCGAACAAGGATGCCACTGATGATAGACGCAATGAGTTTATTCACAAGGGATTGGATGGAAGAATGCAGCATGAAATTAAGACCAGCAATCTCCAGAATCATAAGAATGATACGGTAATCAAAGAGGGAATTATAGTACTGATAAGAATAATTTTCAGGATGAGGTTGTCAACTCTAGCCTCCATGCCAAGTCTGCCAATGGAACCGAGATCAATGACGTTCAACACTCGGATGTTTCTCTTTCTGATCTTCAGGAATCTCAAGCCGCCGCTAAGAATGCAGTACTGAAACTTGCTGACGGAAGCACTGTCATCAACAAGGATGAGAGTCATGTCAACCACGGAAAATCCAGAAACGACGCTGCAGCTTCCCACAAGAGAAATCAAACAAATGCTGATGGATCCAGTGCTAGTTTGGATATTGGATCAAATTCTCATACGGATTTGGAGACACGTGGCGAAGGAGGAAAGAAGGAGAGATATCAAGATCTTGGAACCGGAAAAGTTAGCTCAATGAGTCAAGGATACGAGAAGACTCAAGCGAAGGGAGGAGACAAGTCTTCGAGTCATGATAGTTCATTGACCAGTGACGGAAAGGGACACTTCGTGAAGAGCAACAATGCATCTGATTCTCATCATGTTATTGATGATAAGGACATTGTCAGACATAAGGATGTCATTGTCATGTAAGATTGTGGTGTCTAGAGGTGTTTTCTTTTTTGTGTGCGTGTC</canonical>
            <polymorphic>AGAGTTCCATGGTTTCTGACGATGGAGCTGGACATAAGATCAATGAACAGACTGAAGAGGCTTCGGATCTTCATGACGCTGGAAGTGCTAGCAGTGATATGGACCAGAAGAGGGTTGTGAACAAGGACGGAACTTCTCAGATTTCCAATGACAGCAGCAACCAAACAGCAGTTGAGCATAGCGATTCGGAGAAGAAGAAGCATCACAGAGGAGAACAGAGAGCTGATGGATCATTCATCGAGGAGAACAGTGATTCGGATAAGAAGCACTCGAACAAGGATGCCACTGATGATAGACGCAATGAGTTTATTCACAAGGGATTGGATGGAAGAATGCAGCATGAAATTAAGACCAGCAATCTCCAGAATCATAAGAATGATACGGTAATCAAAGAGGGAATTATAGTACTGATAAGAATAATTTTCAGGATGAGGTTGTCAACTCTAGCCTCCATGCCAAGTCTGCCAATGGAACCGAGATCAATGACGTTCAACACTCGRATGTTTCTCTTTCTGATCTTCAGGAATCTCAAGCCGCCGCTAAGAATGCAGTACTGAAACTTGCTGACGGAAGCACTGTCATCAACAAGGATGAGAGTCATGTCAACCACGGAAAATCCAGAAACGACGCTGCAGCTTCCCACAAGAGAAATCAAACAAATGCTGATGGATCCAGTGCTAGTTTGGATATTGGATCAAATTCTCATACGGATTTGGAGACACGTGGCGAAGGAGGAAAGAAGGAGAGATATCAAGATCTTGGAACCGGAAAAGTTAGCTCAATGAGTCAAGGATACGAGAAGACTCAAGCGAAGGGAGGAGACAAGTCTTCGAGTCATGATAGTTCATTGACCAGTGACGGAAAGGGACACTTCGTGAAGAGCAACAATGCATCTGATTCTCATCATGTTATTGATGATAAGGACATTGTCAGACATAAGGATGTCATTGTCATGTAAGATTGTGGTGTCTAGAGGTGTTTTCTTTTTTGTGTGCGTGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>381 242 74 69 68 49 48 37 17 15</canonical_bands>
                <polymorphic_bands>381 257 74 69 68 49 48 37 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAATTTTCAGGATGAGGTTGT</pcr_primer_p1>
		<pcr_primer_p2>CATTTGTTTGATTTCTCTTGTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATAATTTTCAGGATGAGGTTGTCAACTCTAGCCTCCATGCCAAGTCTGCCAATGGAACCGAGATCAATGACGTTCAACACTCGGATGTTTCTCTTTCTGATCTTCAGGAATCTCAAGCCGCCGCTAAGAATGCAGTACTGAAACTTGCTGACGGAAGCACTGTCATCAACAAGGATGAGAGTCATGTCAACCACGGAAAATCCAGAAACGACGCTGCAGCTTCCCACAAGAGAAATCAAACAAATG</canonical_amplicon>
		<polymorphic_amplicon>AATAATTTTCAGGATGAGGTTGTCAACTCTAGCCTCCATGCCAAGTCTGCCAATGGAACCGAGATCAATGACGTTCAACACTCGRATGTTTCTCTTTCTGATCTTCAGGAATCTCAAGCCGCCGCTAAGAATGCAGTACTGAAACTTGCTGACGGAAGCACTGTCATCAACAAGGATGAGAGTCATGTCAACCACGGAAAATCCAGAAACGACGCTGCAGCTTCCCACAAGAGAAATCAAACAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5275</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>175606</contig_pos>
        <strand>+</strand>
        <context>CGCTAAGAAT[G/T]CAGTACTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGGATGTTTCTCTTTCTGATCTTCAGGAATCTCAAGCCGCCGCTAAGAAT</left_flank>
        <right_flank>CAGTACTGAAACTTGCTGACGGAAGCACTGTCATCAACAAGGATGAGAGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGACTGAAGAGGCTTCGGATCTTCATGACGCTGGAAGTGCTAGCAGTGATATGGACCAGAAGAGGGTTGTGAACAAGGACGGAACTTCTCAGATTTCCAATGACAGCAGCAACCAAACAGCAGTTGAGCATAGCGATTCGGAGAAGAAGAAGCATCACAGAGGAGAACAGAGAGCTGATGGATCATTCATCGAGGAGAACAGTGATTCGGATAAGAAGCACTCGAACAAGGATGCCACTGATGATAGACGCAATGAGTTTATTCACAAGGGATTGGATGGAAGAATGCAGCATGAAATTAAGACCAGCAATCTCCAGAATCATAAGAATGATACGGTAATCAAAGAGGGAATTATAGTACTGATAAGAATAATTTTCAGGATGAGGTTGTCAACTCTAGCCTCCATGCCAAGTCTGCCAATGGAACCGAGATCAATGACGTTCAACACTCGGATGTTTCTCTTTCTGATCTTCAGGAATCTCAAGCCGCCGCTAAGAATGCAGTACTGAAACTTGCTGACGGAAGCACTGTCATCAACAAGGATGAGAGTCATGTCAACCACGGAAAATCCAGAAACGACGCTGCAGCTTCCCACAAGAGAAATCAAACAAATGCTGATGGATCCAGTGCTAGTTTGGATATTGGATCAAATTCTCATACGGATTTGGAGACACGTGGCGAAGGAGGAAAGAAGGAGAGATATCAAGATCTTGGAACCGGAAAAGTTAGCTCAATGAGTCAAGGATACGAGAAGACTCAAGCGAAGGGAGGAGACAAGTCTTCGAGTCATGATAGTTCATTGACCAGTGACGGAAAGGGACACTTCGTGAAGAGCAACAATGCATCTGATTCTCATCATGTTATTGATGATAAGGACATTGTCAGACATAAGGATGTCATTGTCATGTAAGATTGTGGTGTCTAGAGGTGTTTTCTTTTTTGTGTGCGTGTCAAAAATTTGGTTTTTTTATGAAATAAAGTTTCCAACTTTTTCTGGTCG</canonical>
            <polymorphic>AGACTGAAGAGGCTTCGGATCTTCATGACGCTGGAAGTGCTAGCAGTGATATGGACCAGAAGAGGGTTGTGAACAAGGACGGAACTTCTCAGATTTCCAATGACAGCAGCAACCAAACAGCAGTTGAGCATAGCGATTCGGAGAAGAAGAAGCATCACAGAGGAGAACAGAGAGCTGATGGATCATTCATCGAGGAGAACAGTGATTCGGATAAGAAGCACTCGAACAAGGATGCCACTGATGATAGACGCAATGAGTTTATTCACAAGGGATTGGATGGAAGAATGCAGCATGAAATTAAGACCAGCAATCTCCAGAATCATAAGAATGATACGGTAATCAAAGAGGGAATTATAGTACTGATAAGAATAATTTTCAGGATGAGGTTGTCAACTCTAGCCTCCATGCCAAGTCTGCCAATGGAACCGAGATCAATGACGTTCAACACTCGGATGTTTCTCTTTCTGATCTTCAGGAATCTCAAGCCGCCGCTAAGAATKCAGTACTGAAACTTGCTGACGGAAGCACTGTCATCAACAAGGATGAGAGTCATGTCAACCACGGAAAATCCAGAAACGACGCTGCAGCTTCCCACAAGAGAAATCAAACAAATGCTGATGGATCCAGTGCTAGTTTGGATATTGGATCAAATTCTCATACGGATTTGGAGACACGTGGCGAAGGAGGAAAGAAGGAGAGATATCAAGATCTTGGAACCGGAAAAGTTAGCTCAATGAGTCAAGGATACGAGAAGACTCAAGCGAAGGGAGGAGACAAGTCTTCGAGTCATGATAGTTCATTGACCAGTGACGGAAAGGGACACTTCGTGAAGAGCAACAATGCATCTGATTCTCATCATGTTATTGATGATAAGGACATTGTCAGACATAAGGATGTCATTGTCATGTAAGATTGTGGTGTCTAGAGGTGTTTTCTTTTTTGTGTGCGTGTCAAAAATTTGGTTTTTTTATGAAATAAAGTTTCCAACTTTTTCTGGTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 377 84 36</canonical_bands>
                <polymorphic_bands>587 377 36</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>287 258 213 158 84</canonical_bands>
                <polymorphic_bands>297 287 258 158</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAATTTTCAGGATGAGGTTGT</pcr_primer_p1>
		<pcr_primer_p2>CATTTGTTTGATTTCTCTTGTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATAATTTTCAGGATGAGGTTGTCAACTCTAGCCTCCATGCCAAGTCTGCCAATGGAACCGAGATCAATGACGTTCAACACTCGGATGTTTCTCTTTCTGATCTTCAGGAATCTCAAGCCGCCGCTAAGAATGCAGTACTGAAACTTGCTGACGGAAGCACTGTCATCAACAAGGATGAGAGTCATGTCAACCACGGAAAATCCAGAAACGACGCTGCAGCTTCCCACAAGAGAAATCAAACAAATG</canonical_amplicon>
		<polymorphic_amplicon>AATAATTTTCAGGATGAGGTTGTCAACTCTAGCCTCCATGCCAAGTCTGCCAATGGAACCGAGATCAATGACGTTCAACACTCGGATGTTTCTCTTTCTGATCTTCAGGAATCTCAAGCCGCCGCTAAGAATKCAGTACTGAAACTTGCTGACGGAAGCACTGTCATCAACAAGGATGAGAGTCATGTCAACCACGGAAAATCCAGAAACGACGCTGCAGCTTCCCACAAGAGAAATCAAACAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5276</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>175635</contig_pos>
        <strand>+</strand>
        <context>ACGGAAGCAC[A/T]GTCATCAACA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTCAAGCCGCCGCTAAGAATGCAGTACTGAAACTTGCTGACGGAAGCAC</left_flank>
        <right_flank>GTCATCAACAAGGATGAGAGTCATGTCAACCACGGAAAATCCAGAAACGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTGGAAGTGCTAGCAGTGATATGGACCAGAAGAGGGTTGTGAACAAGGACGGAACTTCTCAGATTTCCAATGACAGCAGCAACCAAACAGCAGTTGAGCATAGCGATTCGGAGAAGAAGAAGCATCACAGAGGAGAACAGAGAGCTGATGGATCATTCATCGAGGAGAACAGTGATTCGGATAAGAAGCACTCGAACAAGGATGCCACTGATGATAGACGCAATGAGTTTATTCACAAGGGATTGGATGGAAGAATGCAGCATGAAATTAAGACCAGCAATCTCCAGAATCATAAGAATGATACGGTAATCAAAGAGGGAATTATAGTACTGATAAGAATAATTTTCAGGATGAGGTTGTCAACTCTAGCCTCCATGCCAAGTCTGCCAATGGAACCGAGATCAATGACGTTCAACACTCGGATGTTTCTCTTTCTGATCTTCAGGAATCTCAAGCCGCCGCTAAGAATGCAGTACTGAAACTTGCTGACGGAAGCACTGTCATCAACAAGGATGAGAGTCATGTCAACCACGGAAAATCCAGAAACGACGCTGCAGCTTCCCACAAGAGAAATCAAACAAATGCTGATGGATCCAGTGCTAGTTTGGATATTGGATCAAATTCTCATACGGATTTGGAGACACGTGGCGAAGGAGGAAAGAAGGAGAGATATCAAGATCTTGGAACCGGAAAAGTTAGCTCAATGAGTCAAGGATACGAGAAGACTCAAGCGAAGGGAGGAGACAAGTCTTCGAGTCATGATAGTTCATTGACCAGTGACGGAAAGGGACACTTCGTGAAGAGCAACAATGCATCTGATTCTCATCATGTTATTGATGATAAGGACATTGTCAGACATAAGGATGTCATTGTCATGTAAGATTGTGGTGTCTAGAGGTGTTTTCTTTTTTGTGTGCGTGTCAAAAATTTGGTTTTTTTATGAAATAAAGTTTCCAACTTTTTCTGGTCGAACTGTCTCTTTCAAATTGCCTTTTTTCG</canonical>
            <polymorphic>GCTGGAAGTGCTAGCAGTGATATGGACCAGAAGAGGGTTGTGAACAAGGACGGAACTTCTCAGATTTCCAATGACAGCAGCAACCAAACAGCAGTTGAGCATAGCGATTCGGAGAAGAAGAAGCATCACAGAGGAGAACAGAGAGCTGATGGATCATTCATCGAGGAGAACAGTGATTCGGATAAGAAGCACTCGAACAAGGATGCCACTGATGATAGACGCAATGAGTTTATTCACAAGGGATTGGATGGAAGAATGCAGCATGAAATTAAGACCAGCAATCTCCAGAATCATAAGAATGATACGGTAATCAAAGAGGGAATTATAGTACTGATAAGAATAATTTTCAGGATGAGGTTGTCAACTCTAGCCTCCATGCCAAGTCTGCCAATGGAACCGAGATCAATGACGTTCAACACTCGGATGTTTCTCTTTCTGATCTTCAGGAATCTCAAGCCGCCGCTAAGAATGCAGTACTGAAACTTGCTGACGGAAGCACWGTCATCAACAAGGATGAGAGTCATGTCAACCACGGAAAATCCAGAAACGACGCTGCAGCTTCCCACAAGAGAAATCAAACAAATGCTGATGGATCCAGTGCTAGTTTGGATATTGGATCAAATTCTCATACGGATTTGGAGACACGTGGCGAAGGAGGAAAGAAGGAGAGATATCAAGATCTTGGAACCGGAAAAGTTAGCTCAATGAGTCAAGGATACGAGAAGACTCAAGCGAAGGGAGGAGACAAGTCTTCGAGTCATGATAGTTCATTGACCAGTGACGGAAAGGGACACTTCGTGAAGAGCAACAATGCATCTGATTCTCATCATGTTATTGATGATAAGGACATTGTCAGACATAAGGATGTCATTGTCATGTAAGATTGTGGTGTCTAGAGGTGTTTTCTTTTTTGTGTGCGTGTCAAAAATTTGGTTTTTTTATGAAATAAAGTTTCCAACTTTTTCTGGTCGAACTGTCTCTTTCAAATTGCCTTTTTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTTTCTGATCTTCAGGAATCT</pcr_primer_p1>
		<pcr_primer_p2>TTGATATCTCTCCTTCTTTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTCTTTCTGATCTTCAGGAATCTCAAGCCGCCGCTAAGAATGCAGTACTGAAACTTGCTGACGGAAGCACTGTCATCAACAAGGATGAGAGTCATGTCAACCACGGAAAATCCAGAAACGACGCTGCAGCTTCCCACAAGAGAAATCAAACAAATGCTGATGGATCCAGTGCTAGTTTGGATATTGGATCAAATTCTCATACGGATTTGGAGACACGTGGCGAAGGAGGAAAGAAGGAGAGATATCAA</canonical_amplicon>
		<polymorphic_amplicon>CTCTTTCTGATCTTCAGGAATCTCAAGCCGCCGCTAAGAATGCAGTACTGAAACTTGCTGACGGAAGCACWGTCATCAACAAGGATGAGAGTCATGTCAACCACGGAAAATCCAGAAACGACGCTGCAGCTTCCCACAAGAGAAATCAAACAAATGCTGATGGATCCAGTGCTAGTTTGGATATTGGATCAAATTCTCATACGGATTTGGAGACACGTGGCGAAGGAGGAAAGAAGGAGAGATATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5277</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>175692</contig_pos>
        <strand>+</strand>
        <context>ACGACGCTGC[A/C]GCTTCCCACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACAAGGATGAGAGTCATGTCAACCACGGAAAATCCAGAAACGACGCTGC</left_flank>
        <right_flank>GCTTCCCACAAGAGAAATCAAACAAATGCTGATGGATCCAGTGCTAGTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCAGATTTCCAATGACAGCAGCAACCAAACAGCAGTTGAGCATAGCGATTCGGAGAAGAAGAAGCATCACAGAGGAGAACAGAGAGCTGATGGATCATTCATCGAGGAGAACAGTGATTCGGATAAGAAGCACTCGAACAAGGATGCCACTGATGATAGACGCAATGAGTTTATTCACAAGGGATTGGATGGAAGAATGCAGCATGAAATTAAGACCAGCAATCTCCAGAATCATAAGAATGATACGGTAATCAAAGAGGGAATTATAGTACTGATAAGAATAATTTTCAGGATGAGGTTGTCAACTCTAGCCTCCATGCCAAGTCTGCCAATGGAACCGAGATCAATGACGTTCAACACTCGGATGTTTCTCTTTCTGATCTTCAGGAATCTCAAGCCGCCGCTAAGAATGCAGTACTGAAACTTGCTGACGGAAGCACTGTCATCAACAAGGATGAGAGTCATGTCAACCACGGAAAATCCAGAAACGACGCTGCAGCTTCCCACAAGAGAAATCAAACAAATGCTGATGGATCCAGTGCTAGTTTGGATATTGGATCAAATTCTCATACGGATTTGGAGACACGTGGCGAAGGAGGAAAGAAGGAGAGATATCAAGATCTTGGAACCGGAAAAGTTAGCTCAATGAGTCAAGGATACGAGAAGACTCAAGCGAAGGGAGGAGACAAGTCTTCGAGTCATGATAGTTCATTGACCAGTGACGGAAAGGGACACTTCGTGAAGAGCAACAATGCATCTGATTCTCATCATGTTATTGATGATAAGGACATTGTCAGACATAAGGATGTCATTGTCATGTAAGATTGTGGTGTCTAGAGGTGTTTTCTTTTTTGTGTGCGTGTCAAAAATTTGGTTTTTTTATGAAATAAAGTTTCCAACTTTTTCTGGTCGAACTGTCTCTTTCAAATTGCCTTTTTTCGGTAGTCGTTGCGTTTTTGCTCTTATAGAAGCCTACCCGTGAACTTTGAGCTTACTAG</canonical>
            <polymorphic>TCTCAGATTTCCAATGACAGCAGCAACCAAACAGCAGTTGAGCATAGCGATTCGGAGAAGAAGAAGCATCACAGAGGAGAACAGAGAGCTGATGGATCATTCATCGAGGAGAACAGTGATTCGGATAAGAAGCACTCGAACAAGGATGCCACTGATGATAGACGCAATGAGTTTATTCACAAGGGATTGGATGGAAGAATGCAGCATGAAATTAAGACCAGCAATCTCCAGAATCATAAGAATGATACGGTAATCAAAGAGGGAATTATAGTACTGATAAGAATAATTTTCAGGATGAGGTTGTCAACTCTAGCCTCCATGCCAAGTCTGCCAATGGAACCGAGATCAATGACGTTCAACACTCGGATGTTTCTCTTTCTGATCTTCAGGAATCTCAAGCCGCCGCTAAGAATGCAGTACTGAAACTTGCTGACGGAAGCACTGTCATCAACAAGGATGAGAGTCATGTCAACCACGGAAAATCCAGAAACGACGCTGCMGCTTCCCACAAGAGAAATCAAACAAATGCTGATGGATCCAGTGCTAGTTTGGATATTGGATCAAATTCTCATACGGATTTGGAGACACGTGGCGAAGGAGGAAAGAAGGAGAGATATCAAGATCTTGGAACCGGAAAAGTTAGCTCAATGAGTCAAGGATACGAGAAGACTCAAGCGAAGGGAGGAGACAAGTCTTCGAGTCATGATAGTTCATTGACCAGTGACGGAAAGGGACACTTCGTGAAGAGCAACAATGCATCTGATTCTCATCATGTTATTGATGATAAGGACATTGTCAGACATAAGGATGTCATTGTCATGTAAGATTGTGGTGTCTAGAGGTGTTTTCTTTTTTGTGTGCGTGTCAAAAATTTGGTTTTTTTATGAAATAAAGTTTCCAACTTTTTCTGGTCGAACTGTCTCTTTCAAATTGCCTTTTTTCGGTAGTCGTTGCGTTTTTGCTCTTATAGAAGCCTACCCGTGAACTTTGAGCTTACTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>413 349 142 88 8</canonical_bands>
                <polymorphic_bands>555 349 88 8</polymorphic_bands>
            </assay>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTGCAG</site>
                <isoschizomers>
                    <enzyme>BloHII</enzyme>
                    <enzyme>BstMAI</enzyme>
                    <enzyme>PstI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>330 225 142 102 88 86 19 8</canonical_bands>
                <polymorphic_bands>330 244 225 88 86 19 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>258 244 213 201 84</canonical_bands>
                <polymorphic_bands>342 244 213 201</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTTTCTGATCTTCAGGAATCT</pcr_primer_p1>
		<pcr_primer_p2>TTGATATCTCTCCTTCTTTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTCTTTCTGATCTTCAGGAATCTCAAGCCGCCGCTAAGAATGCAGTACTGAAACTTGCTGACGGAAGCACTGTCATCAACAAGGATGAGAGTCATGTCAACCACGGAAAATCCAGAAACGACGCTGCAGCTTCCCACAAGAGAAATCAAACAAATGCTGATGGATCCAGTGCTAGTTTGGATATTGGATCAAATTCTCATACGGATTTGGAGACACGTGGCGAAGGAGGAAAGAAGGAGAGATATCAA</canonical_amplicon>
		<polymorphic_amplicon>CTCTTTCTGATCTTCAGGAATCTCAAGCCGCCGCTAAGAATGCAGTACTGAAACTTGCTGACGGAAGCACTGTCATCAACAAGGATGAGAGTCATGTCAACCACGGAAAATCCAGAAACGACGCTGCMGCTTCCCACAAGAGAAATCAAACAAATGCTGATGGATCCAGTGCTAGTTTGGATATTGGATCAAATTCTCATACGGATTTGGAGACACGTGGCGAAGGAGGAAAGAAGGAGAGATATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5278</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>181520</contig_pos>
        <strand></strand>
        <context>CAGTRACAAC[C/A]CACTTTTGCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AACATTTCCAATCTGTAGACTTTTGAGTTAGATTGTTTCACAGTAACAAC</left_flank>
        <right_flank>CACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCCTATTCCTTAGAAAATTGGTTACTGTAGCTCCTTGAAGAGATATGGTGTTCCCCACCATATCTCTTCCAACATTCACACTATCCGCATTCACGATTCCTGTATTCTCCTTTTGGATTCTTTATGATCTAGTCTACGTCAAAGGAAACAAAGAACTCGAACACTTCTTCTGGATCTATGGTGTCTACAACGTCTTTGTGGTCTTTCTCACACTCTTGATTCACAATTTATGGAATACTGTATACACGAGTCAGCAGAAATTGAATTTATTGAGAAACTATTTGTCTGTGTGTACAATCTTTTTAATGGTTCAATTCGTCGCAGCCGAGTATCTTTTGTTTGGAGGATCTCTCGATTTGGATTCTGTATGGACTGATGTGAGTTGGATCAGGGGGTGGGATTCATCCTCTCGAACAACAGAGCAAATTTTCAGGCTTAAAAGATCAAAACATTTCCAATCTGTAGACTTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTTGTATTAAAGGTCTACGGTATTCCAGTTTATGGGAAAATATATTTTCCTCTTTTATCTACAGGGTGGCCGATAAGTATAGGACGTTTTGAAAGTGCTCCCATTTTTTCAATTTGAGGATTTTTCGAGAACAACCTTTATTAAACAACAAAAAATAAGCAGAAAATTTGATTTTACAAGAGAAATTCGAAGTTGGATCCACGAGCTTTGACACAGGCTCTCAAACGTTTCTTCACCGAATTGACAGTGCGCCGCAGGTATCCGTCG</canonical>
            <polymorphic>CTTCCTATTCCTTAGAAAATTGGTTACTGTAGCTCCTTGAAGAGATATGGTGTTCCCCACCATATCTCTTCCAACATTCACACTATCCGCATTCACGATTCCTGTATTCTCCTTTTGGATTCTTTATGATCTAGTCTACGTCAAAGGAAACAAAGAACTCGAACACTTCTTCTGGATCTATGGTGTCTACAACGTCTTTGTGGTCTTTCTCACACTCTTGATTCACAATTTATGGAATACTGTATACACGAGTCAGCAGAAATTGAATTTATTGAGAAACTATTTGTCTGTGTGTACAATCTTTTTAATGGTTCAATTCGTCGCAGCCGAGTATCTTTTGTTTGGAGGATCTCTCGATTTGGATTCTGTATGGACTGATGTGAGTTGGATCAGGGGGTGGGATTCATCCTCTCGAACAACAGAGCAAATTTTCAGGCTTAAAAGATCAAAACATTTCCAATCTGTAGACTTTTGAGTTAGATTGTTTCACAGTAACAACMCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTTGTATTAAAGGTCTACGGTATTCCAGTTTATGGGAAAATATATTTTCCTCTTTTATCTACAGGGTGGCCGATAAGTATAGGACGTTTTGAAAGTGCTCCCATTTTTTCAATTTGAGGATTTTTCGAGAACAACCTTTATTAAACAACAAAAAATAAGCAGAAAATTTGATTTTACAAGAGAAATTCGAAGTTGGATCCACGAGCTTTGACACAGGCTCTCAAACGTTTCTTCACCGAATTGACAGTGCGCCGCAGGTATCCGTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAAAACATTTCCAATCTGTAG</pcr_primer_p1>
		<pcr_primer_p2>TGGAATACCGTAGACCTTTAATA</pcr_primer_p2>
		<pcr_amplicon_size>316</pcr_amplicon_size>
		<canonical_amplicon>ATCAAAACATTTCCAATCTGTAGACTTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTTGTATTAAAGGTCTACGGTATTCCA</canonical_amplicon>
		<polymorphic_amplicon>ATCAAAACATTTCCAATCTGTAGACTTTTGAGTTAGATTGTTTCACAGTAACAACMCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTTGTATTAAAGGTCTACGGTATTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5279</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>181514</contig_pos>
        <strand></strand>
        <context>GTTTCACAGT[A/G]ACAACMCACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATCAAAACATTTCCAATCTGTAGACTTTTGAGTTAGATTGTTTCACAGT</left_flank>
        <right_flank>ACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACCTCTTCCTATTCCTTAGAAAATTGGTTACTGTAGCTCCTTGAAGAGATATGGTGTTCCCCACCATATCTCTTCCAACATTCACACTATCCGCATTCACGATTCCTGTATTCTCCTTTTGGATTCTTTATGATCTAGTCTACGTCAAAGGAAACAAAGAACTCGAACACTTCTTCTGGATCTATGGTGTCTACAACGTCTTTGTGGTCTTTCTCACACTCTTGATTCACAATTTATGGAATACTGTATACACGAGTCAGCAGAAATTGAATTTATTGAGAAACTATTTGTCTGTGTGTACAATCTTTTTAATGGTTCAATTCGTCGCAGCCGAGTATCTTTTGTTTGGAGGATCTCTCGATTTGGATTCTGTATGGACTGATGTGAGTTGGATCAGGGGGTGGGATTCATCCTCTCGAACAACAGAGCAAATTTTCAGGCTTAAAAGATCAAAACATTTCCAATCTGTAGACTTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTTGTATTAAAGGTCTACGGTATTCCAGTTTATGGGAAAATATATTTTCCTCTTTTATCTACAGGGTGGCCGATAAGTATAGGACGTTTTGAAAGTGCTCCCATTTTTTCAATTTGAGGATTTTTCGAGAACAACCTTTATTAAACAACAAAAAATAAGCAGAAAATTTGATTTTACAAGAGAAATTCGAAGTTGGATCCACGAGCTTTGACACAGGCTCTCAAACGTTTCTTCACCGAATTGACAGTGCGCCGCAGGTAT</canonical>
            <polymorphic>AAACCTCTTCCTATTCCTTAGAAAATTGGTTACTGTAGCTCCTTGAAGAGATATGGTGTTCCCCACCATATCTCTTCCAACATTCACACTATCCGCATTCACGATTCCTGTATTCTCCTTTTGGATTCTTTATGATCTAGTCTACGTCAAAGGAAACAAAGAACTCGAACACTTCTTCTGGATCTATGGTGTCTACAACGTCTTTGTGGTCTTTCTCACACTCTTGATTCACAATTTATGGAATACTGTATACACGAGTCAGCAGAAATTGAATTTATTGAGAAACTATTTGTCTGTGTGTACAATCTTTTTAATGGTTCAATTCGTCGCAGCCGAGTATCTTTTGTTTGGAGGATCTCTCGATTTGGATTCTGTATGGACTGATGTGAGTTGGATCAGGGGGTGGGATTCATCCTCTCGAACAACAGAGCAAATTTTCAGGCTTAAAAGATCAAAACATTTCCAATCTGTAGACTTTTGAGTTAGATTGTTTCACAGTRACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTTGTATTAAAGGTCTACGGTATTCCAGTTTATGGGAAAATATATTTTCCTCTTTTATCTACAGGGTGGCCGATAAGTATAGGACGTTTTGAAAGTGCTCCCATTTTTTCAATTTGAGGATTTTTCGAGAACAACCTTTATTAAACAACAAAAAATAAGCAGAAAATTTGATTTTACAAGAGAAATTCGAAGTTGGATCCACGAGCTTTGACACAGGCTCTCAAACGTTTCTTCACCGAATTGACAGTGCGCCGCAGGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATCAAAACATTTCCAATCTG</pcr_primer_p1>
		<pcr_primer_p2>TGGAATACCGTAGACCTTTAATA</pcr_primer_p2>
		<pcr_amplicon_size>318</pcr_amplicon_size>
		<canonical_amplicon>AGATCAAAACATTTCCAATCTGTAGACTTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTTGTATTAAAGGTCTACGGTATTCCA</canonical_amplicon>
		<polymorphic_amplicon>AGATCAAAACATTTCCAATCTGTAGACTTTTGAGTTAGATTGTTTCACAGTRACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTTGTATTAAAGGTCTACGGTATTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5280</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>181489</contig_pos>
        <strand></strand>
        <context>AATCTGTAGA[C/A]TTTTGAGTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ACAGAGCAAATTTTCAGGCTTAAAAGATCAAAACATTTCCAATCTGTAGA</left_flank>
        <right_flank>TTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTTCCCAAATTTTGAATTCCTAGAAACCTCTTCCTATTCCTTAGAAAATTGGTTACTGTAGCTCCTTGAAGAGATATGGTGTTCCCCACCATATCTCTTCCAACATTCACACTATCCGCATTCACGATTCCTGTATTCTCCTTTTGGATTCTTTATGATCTAGTCTACGTCAAAGGAAACAAAGAACTCGAACACTTCTTCTGGATCTATGGTGTCTACAACGTCTTTGTGGTCTTTCTCACACTCTTGATTCACAATTTATGGAATACTGTATACACGAGTCAGCAGAAATTGAATTTATTGAGAAACTATTTGTCTGTGTGTACAATCTTTTTAATGGTTCAATTCGTCGCAGCCGAGTATCTTTTGTTTGGAGGATCTCTCGATTTGGATTCTGTATGGACTGATGTGAGTTGGATCAGGGGGTGGGATTCATCCTCTCGAACAACAGAGCAAATTTTCAGGCTTAAAAGATCAAAACATTTCCAATCTGTAGACTTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTTGTATTAAAGGTCTACGGTATTCCAGTTTATGGGAAAATATATTTTCCTCTTTTATCTACAGGGTGGCCGATAAGTATAGGACGTTTTGAAAGTGCTCCCATTTTTTCAATTTGAGGATTTTTCGAGAACAACCTTTATTAAACAACAAAAAATAAGCAGAAAATTTGATTTTACAAGAGAAATTCGAAGTTGGATCCACGAGCTTTGACACAGGCTCTCAAACGTTTCTTCAC</canonical>
            <polymorphic>ACCTTCCCAAATTTTGAATTCCTAGAAACCTCTTCCTATTCCTTAGAAAATTGGTTACTGTAGCTCCTTGAAGAGATATGGTGTTCCCCACCATATCTCTTCCAACATTCACACTATCCGCATTCACGATTCCTGTATTCTCCTTTTGGATTCTTTATGATCTAGTCTACGTCAAAGGAAACAAAGAACTCGAACACTTCTTCTGGATCTATGGTGTCTACAACGTCTTTGTGGTCTTTCTCACACTCTTGATTCACAATTTATGGAATACTGTATACACGAGTCAGCAGAAATTGAATTTATTGAGAAACTATTTGTCTGTGTGTACAATCTTTTTAATGGTTCAATTCGTCGCAGCCGAGTATCTTTTGTTTGGAGGATCTCTCGATTTGGATTCTGTATGGACTGATGTGAGTTGGATCAGGGGGTGGGATTCATCCTCTCGAACAACAGAGCAAATTTTCAGGCTTAAAAGATCAAAACATTTCCAATCTGTAGAMTTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTTGTATTAAAGGTCTACGGTATTCCAGTTTATGGGAAAATATATTTTCCTCTTTTATCTACAGGGTGGCCGATAAGTATAGGACGTTTTGAAAGTGCTCCCATTTTTTCAATTTGAGGATTTTTCGAGAACAACCTTTATTAAACAACAAAAAATAAGCAGAAAATTTGATTTTACAAGAGAAATTCGAAGTTGGATCCACGAGCTTTGACACAGGCTCTCAAACGTTTCTTCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>282 222 222 166 57 51</canonical_bands>
                <polymorphic_bands>504 222 166 57 51</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>221 172 167 116 105 61 57 51 50</canonical_bands>
                <polymorphic_bands>233 221 167 116 105 57 51 50</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAACAGAGCAAATTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>TGGAATACCGTAGACCTTTAATA</pcr_primer_p2>
		<pcr_amplicon_size>346</pcr_amplicon_size>
		<canonical_amplicon>AACAACAGAGCAAATTTTCAGGCTTAAAAGATCAAAACATTTCCAATCTGTAGACTTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTTGTATTAAAGGTCTACGGTATTCCA</canonical_amplicon>
		<polymorphic_amplicon>AACAACAGAGCAAATTTTCAGGCTTAAAAGATCAAAACATTTCCAATCTGTAGAMTTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTTGTATTAAAGGTCTACGGTATTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5281</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>181414</contig_pos>
        <strand></strand>
        <context>GTTGGATCAG[G/C]GGGTGGGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GGAGGATCTCTCGATTTGGATTCTGTATGGACTGATGTGAGTTGGATCAG</left_flank>
        <right_flank>GGGTGGGATTCATCCTCTCGAACAACAGAGCAAATTTTCAGGCTTAAAAG</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAGAGTATTACATGTTTAGAGACGCAGAAAAATGGGCGGATCCAAAGGAGAGAGCCTCTTCTTCCTTTTTCATACCTTCCCAAATTTTGAATTCCTAGAAACCTCTTCCTATTCCTTAGAAAATTGGTTACTGTAGCTCCTTGAAGAGATATGGTGTTCCCCACCATATCTCTTCCAACATTCACACTATCCGCATTCACGATTCCTGTATTCTCCTTTTGGATTCTTTATGATCTAGTCTACGTCAAAGGAAACAAAGAACTCGAACACTTCTTCTGGATCTATGGTGTCTACAACGTCTTTGTGGTCTTTCTCACACTCTTGATTCACAATTTATGGAATACTGTATACACGAGTCAGCAGAAATTGAATTTATTGAGAAACTATTTGTCTGTGTGTACAATCTTTTTAATGGTTCAATTCGTCGCAGCCGAGTATCTTTTGTTTGGAGGATCTCTCGATTTGGATTCTGTATGGACTGATGTGAGTTGGATCAGGGGGTGGGATTCATCCTCTCGAACAACAGAGCAAATTTTCAGGCTTAAAAGATCAAAACATTTCCAATCTGTAGACTTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTTGTATTAAAGGTCTACGGTATTCCAGTTTATGGGAAAATATATTTTCCTCTTTTATCTACAGGGTGGCCGATAAGTATAGGACGTTTTGAAAGTGCTCCCATTTTTTCAATTTGAGGATTTTTCGAGAACAACCTTTATTAAACAACAAAAAATAAGCA</canonical>
            <polymorphic>GAGAGAGTATTACATGTTTAGAGACGCAGAAAAATGGGCGGATCCAAAGGAGAGAGCCTCTTCTTCCTTTTTCATACCTTCCCAAATTTTGAATTCCTAGAAACCTCTTCCTATTCCTTAGAAAATTGGTTACTGTAGCTCCTTGAAGAGATATGGTGTTCCCCACCATATCTCTTCCAACATTCACACTATCCGCATTCACGATTCCTGTATTCTCCTTTTGGATTCTTTATGATCTAGTCTACGTCAAAGGAAACAAAGAACTCGAACACTTCTTCTGGATCTATGGTGTCTACAACGTCTTTGTGGTCTTTCTCACACTCTTGATTCACAATTTATGGAATACTGTATACACGAGTCAGCAGAAATTGAATTTATTGAGAAACTATTTGTCTGTGTGTACAATCTTTTTAATGGTTCAATTCGTCGCAGCCGAGTATCTTTTGTTTGGAGGATCTCTCGATTTGGATTCTGTATGGACTGATGTGAGTTGGATCAGSGGGTGGGATTCATCCTCTCGAACAACAGAGCAAATTTTCAGGCTTAAAAGATCAAAACATTTCCAATCTGTAGACTTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTTGTATTAAAGGTCTACGGTATTCCAGTTTATGGGAAAATATATTTTCCTCTTTTATCTACAGGGTGGCCGATAAGTATAGGACGTTTTGAAAGTGCTCCCATTTTTTCAATTTGAGGATTTTTCGAGAACAACCTTTATTAAACAACAAAAAATAAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCACACTCTTGATTCACAATTTA</pcr_primer_p1>
		<pcr_primer_p2>ATTGGAAATGTTTTGATCTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCACACTCTTGATTCACAATTTATGGAATACTGTATACACGAGTCAGCAGAAATTGAATTTATTGAGAAACTATTTGTCTGTGTGTACAATCTTTTTAATGGTTCAATTCGTCGCAGCCGAGTATCTTTTGTTTGGAGGATCTCTCGATTTGGATTCTGTATGGACTGATGTGAGTTGGATCAGGGGGTGGGATTCATCCTCTCGAACAACAGAGCAAATTTTCAGGCTTAAAAGATCAAAACATTTCCAAT</canonical_amplicon>
		<polymorphic_amplicon>TCACACTCTTGATTCACAATTTATGGAATACTGTATACACGAGTCAGCAGAAATTGAATTTATTGAGAAACTATTTGTCTGTGTGTACAATCTTTTTAATGGTTCAATTCGTCGCAGCCGAGTATCTTTTGTTTGGAGGATCTCTCGATTTGGATTCTGTATGGACTGATGTGAGTTGGATCAGSGGGTGGGATTCATCCTCTCGAACAACAGAGCAAATTTTCAGGCTTAAAAGATCAAAACATTTCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5282</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>181360</contig_pos>
        <strand></strand>
        <context>AGTATCTTTT[G/T]TTTGGAGGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGTGTACAATCTTTTTAATGGTTCAATTCGTCGCAGCCGAGTATCTTTT</left_flank>
        <right_flank>TTTGGAGGATCTCTCGATTTGGATTCTGTATGGACTGATGTGAGTTGGAT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGAAACAAACGATTTGGGTTTCCCGAAAAAGCCATTTAAATATGTGCACAACGAGAGAGTATTACATGTTTAGAGACGCAGAAAAATGGGCGGATCCAAAGGAGAGAGCCTCTTCTTCCTTTTTCATACCTTCCCAAATTTTGAATTCCTAGAAACCTCTTCCTATTCCTTAGAAAATTGGTTACTGTAGCTCCTTGAAGAGATATGGTGTTCCCCACCATATCTCTTCCAACATTCACACTATCCGCATTCACGATTCCTGTATTCTCCTTTTGGATTCTTTATGATCTAGTCTACGTCAAAGGAAACAAAGAACTCGAACACTTCTTCTGGATCTATGGTGTCTACAACGTCTTTGTGGTCTTTCTCACACTCTTGATTCACAATTTATGGAATACTGTATACACGAGTCAGCAGAAATTGAATTTATTGAGAAACTATTTGTCTGTGTGTACAATCTTTTTAATGGTTCAATTCGTCGCAGCCGAGTATCTTTTGTTTGGAGGATCTCTCGATTTGGATTCTGTATGGACTGATGTGAGTTGGATCAGGGGGTGGGATTCATCCTCTCGAACAACAGAGCAAATTTTCAGGCTTAAAAGATCAAAACATTTCCAATCTGTAGACTTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTTGTATTAAAGGTCTACGGTATTCCAGTTTATGGGAAAATATATTTTCCTCTTTTATCTACAGGGTGGCCGATAAGTATAGGACGTTTTGAAAGTGCTCCCATTTT</canonical>
            <polymorphic>ACAGAAACAAACGATTTGGGTTTCCCGAAAAAGCCATTTAAATATGTGCACAACGAGAGAGTATTACATGTTTAGAGACGCAGAAAAATGGGCGGATCCAAAGGAGAGAGCCTCTTCTTCCTTTTTCATACCTTCCCAAATTTTGAATTCCTAGAAACCTCTTCCTATTCCTTAGAAAATTGGTTACTGTAGCTCCTTGAAGAGATATGGTGTTCCCCACCATATCTCTTCCAACATTCACACTATCCGCATTCACGATTCCTGTATTCTCCTTTTGGATTCTTTATGATCTAGTCTACGTCAAAGGAAACAAAGAACTCGAACACTTCTTCTGGATCTATGGTGTCTACAACGTCTTTGTGGTCTTTCTCACACTCTTGATTCACAATTTATGGAATACTGTATACACGAGTCAGCAGAAATTGAATTTATTGAGAAACTATTTGTCTGTGTGTACAATCTTTTTAATGGTTCAATTCGTCGCAGCCGAGTATCTTTTKTTTGGAGGATCTCTCGATTTGGATTCTGTATGGACTGATGTGAGTTGGATCAGGGGGTGGGATTCATCCTCTCGAACAACAGAGCAAATTTTCAGGCTTAAAAGATCAAAACATTTCCAATCTGTAGACTTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTTGTATTAAAGGTCTACGGTATTCCAGTTTATGGGAAAATATATTTTCCTCTTTTATCTACAGGGTGGCCGATAAGTATAGGACGTTTTGAAAGTGCTCCCATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCACACTCTTGATTCACAATTTA</pcr_primer_p1>
		<pcr_primer_p2>ATTGGAAATGTTTTGATCTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCACACTCTTGATTCACAATTTATGGAATACTGTATACACGAGTCAGCAGAAATTGAATTTATTGAGAAACTATTTGTCTGTGTGTACAATCTTTTTAATGGTTCAATTCGTCGCAGCCGAGTATCTTTTGTTTGGAGGATCTCTCGATTTGGATTCTGTATGGACTGATGTGAGTTGGATCAGGGGGTGGGATTCATCCTCTCGAACAACAGAGCAAATTTTCAGGCTTAAAAGATCAAAACATTTCCAAT</canonical_amplicon>
		<polymorphic_amplicon>TCACACTCTTGATTCACAATTTATGGAATACTGTATACACGAGTCAGCAGAAATTGAATTTATTGAGAAACTATTTGTCTGTGTGTACAATCTTTTTAATGGTTCAATTCGTCGCAGCCGAGTATCTTTTKTTTGGAGGATCTCTCGATTTGGATTCTGTATGGACTGATGTGAGTTGGATCAGGGGGTGGGATTCATCCTCTCGAACAACAGAGCAAATTTTCAGGCTTAAAAGATCAAAACATTTCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5283</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>181806</contig_pos>
        <strand></strand>
        <context>TATTTTCCTC[T/A]TTTATCTACA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGTATTAAAGGTCTACGGTATTCCAGTTTATGGGAAAATATATTTTCCTC</left_flank>
        <right_flank>TTTATCTACAGGGTGGCCGATAAGTATAGGACGTTTTGAAAGTGCTCCCA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGTGTGTACAATCTTTTTAATGGTTCAATTCGTCGCAGCCGAGTATCTTTTGTTTGGAGGATCTCTCGATTTGGATTCTGTATGGACTGATGTGAGTTGGATCAGGGGGTGGGATTCATCCTCTCGAACAACAGAGCAAATTTTCAGGCTTAAAAGATCAAAACATTTCCAATCTGTAGACTTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTTGTATTAAAGGTCTACGGTATTCCAGTTTATGGGAAAATATATTTTCCTCTTTTATCTACAGGGTGGCCGATAAGTATAGGACGTTTTGAAAGTGCTCCCATTTTTTCAATTTGAGGATTTTTCGAGAACAACCTTTATTAAACAACAAAAAATAAGCAGAAAATTTGATTTTACAAGAGAAATTCGAAGTTGGATCCACGAGCTTTGACACAGGCTCTCAAACGTTTCTTCACCGAATTGACAGTGCGCCGCAGGTATCCGTCGTCGATCGAAGCCCATGCTACCTCGAGAGCGGCCTTCAAGTCATCGACAGTAGCAAAAACTTTTCCCGCGATCTTCCCTTCCAACATGCCCAAACGCTGAAATCCATCGGATTGAGATCCGGGCTGGAAGCAGGCCACAAGTTCTTGTCCAGGAATCCAGGGAAATGCGCCTCCAAGACGGCCAATGTCGATCTCGAGCCATGGGACGGTGCCCAGTCTTGTTGAAGGATAAATGGACCGCCAGCAAAGTGCTGAGTGACCCAGGGTAACAAATTATCCATCAACAC</canonical>
            <polymorphic>TCTGTGTGTACAATCTTTTTAATGGTTCAATTCGTCGCAGCCGAGTATCTTTTGTTTGGAGGATCTCTCGATTTGGATTCTGTATGGACTGATGTGAGTTGGATCAGGGGGTGGGATTCATCCTCTCGAACAACAGAGCAAATTTTCAGGCTTAAAAGATCAAAACATTTCCAATCTGTAGACTTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTTGTATTAAAGGTCTACGGTATTCCAGTTTATGGGAAAATATATTTTCCTCWTTTATCTACAGGGTGGCCGATAAGTATAGGACGTTTTGAAAGTGCTCCCATTTTTTCAATTTGAGGATTTTTCGAGAACAACCTTTATTAAACAACAAAAAATAAGCAGAAAATTTGATTTTACAAGAGAAATTCGAAGTTGGATCCACGAGCTTTGACACAGGCTCTCAAACGTTTCTTCACCGAATTGACAGTGCGCCGCAGGTATCCGTCGTCGATCGAAGCCCATGCTACCTCGAGAGCGGCCTTCAAGTCATCGACAGTAGCAAAAACTTTTCCCGCGATCTTCCCTTCCAACATGCCCAAACGCTGAAATCCATCGGATTGAGATCCGGGCTGGAAGCAGGCCACAAGTTCTTGTCCAGGAATCCAGGGAAATGCGCCTCCAAGACGGCCAATGTCGATCTCGAGCCATGGGACGGTGCCCAGTCTTGTTGAAGGATAAATGGACCGCCAGCAAAGTGCTGAGTGACCCAGGGTAACAAATTATCCATCAACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAGTTAGATTGTTTCACAGT</pcr_primer_p1>
		<pcr_primer_p2>GTTCTCGAAAAATCCTCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>396</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTTGTATTAAAGGTCTACGGTATTCCAGTTTATGGGAAAATATATTTTCCTCTTTTATCTACAGGGTGGCCGATAAGTATAGGACGTTTTGAAAGTGCTCCCATTTTTTCAATTTGAGGATTTTTCGAGAAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTTGTATTAAAGGTCTACGGTATTCCAGTTTATGGGAAAATATATTTTCCTCWTTTATCTACAGGGTGGCCGATAAGTATAGGACGTTTTGAAAGTGCTCCCATTTTTTCAATTTGAGGATTTTTCGAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5284</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>181756</contig_pos>
        <strand></strand>
        <context>TGGAATGSCT[T/C]GTATTAAAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCT</left_flank>
        <right_flank>GTATTAAAGGTCTACGGTATTCCAGTTTATGGGAAAATATATTTTCCTCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATACTGTATACACGAGTCAGCAGAAATTGAATTTATTGAGAAACTATTTGTCTGTGTGTACAATCTTTTTAATGGTTCAATTCGTCGCAGCCGAGTATCTTTTGTTTGGAGGATCTCTCGATTTGGATTCTGTATGGACTGATGTGAGTTGGATCAGGGGGTGGGATTCATCCTCTCGAACAACAGAGCAAATTTTCAGGCTTAAAAGATCAAAACATTTCCAATCTGTAGACTTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTTGTATTAAAGGTCTACGGTATTCCAGTTTATGGGAAAATATATTTTCCTCTTTTATCTACAGGGTGGCCGATAAGTATAGGACGTTTTGAAAGTGCTCCCATTTTTTCAATTTGAGGATTTTTCGAGAACAACCTTTATTAAACAACAAAAAATAAGCAGAAAATTTGATTTTACAAGAGAAATTCGAAGTTGGATCCACGAGCTTTGACACAGGCTCTCAAACGTTTCTTCACCGAATTGACAGTGCGCCGCAGGTATCCGTCGTCGATCGAAGCCCATGCTACCTCGAGAGCGGCCTTCAAGTCATCGACAGTAGCAAAAACTTTTCCCGCGATCTTCCCTTCCAACATGCCCAAACGCTGAAATCCATCGGATTGAGATCCGGGCTGGAAGCAGGCCACAAGTTCTTGTCCAGGAATCCAGGGAAATGCGCCTCCAAGACGGCCAATGTCGATCTCGAGCCATGGGACGGTGCCCAGTCTTGTTGAAGGATAAATGGA</canonical>
            <polymorphic>ATACTGTATACACGAGTCAGCAGAAATTGAATTTATTGAGAAACTATTTGTCTGTGTGTACAATCTTTTTAATGGTTCAATTCGTCGCAGCCGAGTATCTTTTGTTTGGAGGATCTCTCGATTTGGATTCTGTATGGACTGATGTGAGTTGGATCAGGGGGTGGGATTCATCCTCTCGAACAACAGAGCAAATTTTCAGGCTTAAAAGATCAAAACATTTCCAATCTGTAGACTTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTYGTATTAAAGGTCTACGGTATTCCAGTTTATGGGAAAATATATTTTCCTCTTTTATCTACAGGGTGGCCGATAAGTATAGGACGTTTTGAAAGTGCTCCCATTTTTTCAATTTGAGGATTTTTCGAGAACAACCTTTATTAAACAACAAAAAATAAGCAGAAAATTTGATTTTACAAGAGAAATTCGAAGTTGGATCCACGAGCTTTGACACAGGCTCTCAAACGTTTCTTCACCGAATTGACAGTGCGCCGCAGGTATCCGTCGTCGATCGAAGCCCATGCTACCTCGAGAGCGGCCTTCAAGTCATCGACAGTAGCAAAAACTTTTCCCGCGATCTTCCCTTCCAACATGCCCAAACGCTGAAATCCATCGGATTGAGATCCGGGCTGGAAGCAGGCCACAAGTTCTTGTCCAGGAATCCAGGGAAATGCGCCTCCAAGACGGCCAATGTCGATCTCGAGCCATGGGACGGTGCCCAGTCTTGTTGAAGGATAAATGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAGTTAGATTGTTTCACAGT</pcr_primer_p1>
		<pcr_primer_p2>ACTTTCAAAACGTCCTATACTTATC</pcr_primer_p2>
		<pcr_amplicon_size>360</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTTGTATTAAAGGTCTACGGTATTCCAGTTTATGGGAAAATATATTTTCCTCTTTTATCTACAGGGTGGCCGATAAGTATAGGACGTTTTGAAAGT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTYGTATTAAAGGTCTACGGTATTCCAGTTTATGGGAAAATATATTTTCCTCTTTTATCTACAGGGTGGCCGATAAGTATAGGACGTTTTGAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5285</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>181753</contig_pos>
        <strand></strand>
        <context>GTATGGAATG[G/C]CTYGTATTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATG</left_flank>
        <right_flank>CTTGTATTAAAGGTCTACGGTATTCCAGTTTATGGGAAAATATATTTTCC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAATACTGTATACACGAGTCAGCAGAAATTGAATTTATTGAGAAACTATTTGTCTGTGTGTACAATCTTTTTAATGGTTCAATTCGTCGCAGCCGAGTATCTTTTGTTTGGAGGATCTCTCGATTTGGATTCTGTATGGACTGATGTGAGTTGGATCAGGGGGTGGGATTCATCCTCTCGAACAACAGAGCAAATTTTCAGGCTTAAAAGATCAAAACATTTCCAATCTGTAGACTTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTTGTATTAAAGGTCTACGGTATTCCAGTTTATGGGAAAATATATTTTCCTCTTTTATCTACAGGGTGGCCGATAAGTATAGGACGTTTTGAAAGTGCTCCCATTTTTTCAATTTGAGGATTTTTCGAGAACAACCTTTATTAAACAACAAAAAATAAGCAGAAAATTTGATTTTACAAGAGAAATTCGAAGTTGGATCCACGAGCTTTGACACAGGCTCTCAAACGTTTCTTCACCGAATTGACAGTGCGCCGCAGGTATCCGTCGTCGATCGAAGCCCATGCTACCTCGAGAGCGGCCTTCAAGTCATCGACAGTAGCAAAAACTTTTCCCGCGATCTTCCCTTCCAACATGCCCAAACGCTGAAATCCATCGGATTGAGATCCGGGCTGGAAGCAGGCCACAAGTTCTTGTCCAGGAATCCAGGGAAATGCGCCTCCAAGACGGCCAATGTCGATCTCGAGCCATGGGACGGTGCCCAGTCTTGTTGAAGGATAAAT</canonical>
            <polymorphic>GGAATACTGTATACACGAGTCAGCAGAAATTGAATTTATTGAGAAACTATTTGTCTGTGTGTACAATCTTTTTAATGGTTCAATTCGTCGCAGCCGAGTATCTTTTGTTTGGAGGATCTCTCGATTTGGATTCTGTATGGACTGATGTGAGTTGGATCAGGGGGTGGGATTCATCCTCTCGAACAACAGAGCAAATTTTCAGGCTTAAAAGATCAAAACATTTCCAATCTGTAGACTTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGSCTTGTATTAAAGGTCTACGGTATTCCAGTTTATGGGAAAATATATTTTCCTCTTTTATCTACAGGGTGGCCGATAAGTATAGGACGTTTTGAAAGTGCTCCCATTTTTTCAATTTGAGGATTTTTCGAGAACAACCTTTATTAAACAACAAAAAATAAGCAGAAAATTTGATTTTACAAGAGAAATTCGAAGTTGGATCCACGAGCTTTGACACAGGCTCTCAAACGTTTCTTCACCGAATTGACAGTGCGCCGCAGGTATCCGTCGTCGATCGAAGCCCATGCTACCTCGAGAGCGGCCTTCAAGTCATCGACAGTAGCAAAAACTTTTCCCGCGATCTTCCCTTCCAACATGCCCAAACGCTGAAATCCATCGGATTGAGATCCGGGCTGGAAGCAGGCCACAAGTTCTTGTCCAGGAATCCAGGGAAATGCGCCTCCAAGACGGCCAATGTCGATCTCGAGCCATGGGACGGTGCCCAGTCTTGTTGAAGGATAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>136 117 110 109 93 91 69 60 49 47 36 22 21 17 12 11</canonical_bands>
                <polymorphic_bands>136 118 117 110 109 93 91 60 47 36 22 21 17 12 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAGTTAGATTGTTTCACAGT</pcr_primer_p1>
		<pcr_primer_p2>ACTTTCAAAACGTCCTATACTTATC</pcr_primer_p2>
		<pcr_amplicon_size>360</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTTGTATTAAAGGTCTACGGTATTCCAGTTTATGGGAAAATATATTTTCCTCTTTTATCTACAGGGTGGCCGATAAGTATAGGACGTTTTGAAAGT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGSCTTGTATTAAAGGTCTACGGTATTCCAGTTTATGGGAAAATATATTTTCCTCTTTTATCTACAGGGTGGCCGATAAGTATAGGACGTTTTGAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5288</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>187958</contig_pos>
        <strand></strand>
        <context>AATTTTTAGA[G/T]ATTTAGAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGCTCCAAATCGATGATGGTCTTAGCGTACTTTTCCTGAAATTTTTAGA</left_flank>
        <right_flank>ATTTAGAAATTTGAAAATGACTCAAAACTGACCTGGAATTTGATAGGATA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTAGTGGGTCTCCTACCTCAATTTTTTTTTAAATTCGGTGTTTGCGAACTTTCAAAACCACAGTAACCCGAAACACTCAAAATCATCAAACCCATTCAATACGGGTATAAAAATGTCGGAAATTTCAAGATTAGATTAGATTCGCCTCCAAATTTCCAAAAACTGTACCTGTAACAAGACGGCAGTCAACGCTTGAATCAGTGTCAACGCATGAACATTCTCCACGTTTAACCCTTGATTGCAGTGCTCTACAAATCGTCCCGCCTGTTGATAACACACTTTTCGAACCGCTTCTGGTTTCATATTCGCCGTGGAGATCTGAAATTGCTTTTGATATTTATAAAGAGCTGAGCTATTGGAAAATTCCTTCTTACATCATTAGACGATGAGAAGTACATTGTATGATCCTGAATTCCGGTCATATTAACATCGATGTGATGATTCACATGCTCCAAATCGATGATGGTCTTAGCGTACTTTTCCTGAAATTTTTAGAGATTTAGAAATTTGAAAATGACTCAAAACTGACCTGGAATTTGATAGGATACTTATCATTTGTCAAATGTTGCATCTCTGCTTCTACATTCAAATCCGTCAAATTCTTAATTAATCCTCTTTTAATCTCAACCAGTTTCGTCAGATTAACAAGATTGACCATGAATTTCAATGGATAATTTCCAACGATTTCCTGATTCTTTCCAGTCAGTCTCTCGTCATCTAACCCATTCAATGGACCGCCCTTCTCTAATTTTCTAGCGACAAGTTCATGCGAACCAGATGCGGTCGATTCGGATCACGAACCGCGGCGACGAATGGGCGAACGCCGATGGGAAGTTTCGAGTTAGCTTGTTCAATGAAGTAAGCGATGCTCAGAAGGTCGGTTTTTCCGTCGAGGAGCACTTCGGTGTCACTGACAAGCGATGGTGGAATGTCGGGCTGGAATTGAGCAATTGATTTTTCATTACAGTGAACACTAATAGAAGGCCACAAGAGCCTC</canonical>
            <polymorphic>TTTTTAGTGGGTCTCCTACCTCAATTTTTTTTTAAATTCGGTGTTTGCGAACTTTCAAAACCACAGTAACCCGAAACACTCAAAATCATCAAACCCATTCAATACGGGTATAAAAATGTCGGAAATTTCAAGATTAGATTAGATTCGCCTCCAAATTTCCAAAAACTGTACCTGTAACAAGACGGCAGTCAACGCTTGAATCAGTGTCAACGCATGAACATTCTCCACGTTTAACCCTTGATTGCAGTGCTCTACAAATCGTCCCGCCTGTTGATAACACACTTTTCGAACCGCTTCTGGTTTCATATTCGCCGTGGAGATCTGAAATTGCTTTTGATATTTATAAAGAGCTGAGCTATTGGAAAATTCCTTCTTACATCATTAGACGATGAGAAGTACATTGTATGATCCTGAATTCCGGTCATATTAACATCGATGTGATGATTCACATGCTCCAAATCGATGATGGTCTTAGCGTACTTTTCCTGAAATTTTTAGAKATTTAGAAATTTGAAAATGACTCAAAACTGACCTGGAATTTGATAGGATACTTATCATTTGTCAAATGTTGCATCTCTGCTTCTACATTCAAATCCGTCAAATTCTTAATTAATCCTCTTTTAATCTCAACCAGTTTCGTCAGATTAACAAGATTGACCATGAATTTCAATGGATAATTTCCAACGATTTCCTGATTCTTTCCAGTCAGTCTCTCGTCATCTAACCCATTCAATGGACCGCCCTTCTCTAATTTTCTAGCGACAAGTTCATGCGAACCAGATGCGGTCGATTCGGATCACGAACCGCGGCGACGAATGGGCGAACGCCGATGGGAAGTTTCGAGTTAGCTTGTTCAATGAAGTAAGCGATGCTCAGAAGGTCGGTTTTTCCGTCGAGGAGCACTTCGGTGTCACTGACAAGCGATGGTGGAATGTCGGGCTGGAATTGAGCAATTGATTTTTCATTACAGTGAACACTAATAGAAGGCCACAAGAGCCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAATTCCTTCTTACATCATT</pcr_primer_p1>
		<pcr_primer_p2>TAATTAAGAATTTGACGGATTTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGAAAATTCCTTCTTACATCATTAGACGATGAGAAGTACATTGTATGATCCTGAATTCCGGTCATATTAACATCGATGTGATGATTCACATGCTCCAAATCGATGATGGTCTTAGCGTACTTTTCCTGAAATTTTTAGAGATTTAGAAATTTGAAAATGACTCAAAACTGACCTGGAATTTGATAGGATACTTATCATTTGTCAAATGTTGCATCTCTGCTTCTACATTCAAATCCGTCAAATTCTTAATTA</canonical_amplicon>
		<polymorphic_amplicon>GGAAAATTCCTTCTTACATCATTAGACGATGAGAAGTACATTGTATGATCCTGAATTCCGGTCATATTAACATCGATGTGATGATTCACATGCTCCAAATCGATGATGGTCTTAGCGTACTTTTCCTGAAATTTTTAGAKATTTAGAAATTTGAAAATGACTCAAAACTGACCTGGAATTTGATAGGATACTTATCATTTGTCAAATGTTGCATCTCTGCTTCTACATTCAAATCCGTCAAATTCTTAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5289</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>188290</contig_pos>
        <strand></strand>
        <context>GAACGCCGAT[G/T]GGAAGTTTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGCGGTCGATTCGGATCACGAACCGCGGCGACGAATGGGCGAACGCCGAT</left_flank>
        <right_flank>GGAAGTTTCGAGTTAGCTTGTTCAATGAAGTAAGCGATGCTCAGAAGGTC</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGATATTTATAAAGAGCTGAGCTATTGGAAAATTCCTTCTTACATCATTAGACGATGAGAAGTACATTGTATGATCCTGAATTCCGGTCATATTAACATCGATGTGATGATTCACATGCTCCAAATCGATGATGGTCTTAGCGTACTTTTCCTGAAATTTTTAGAGATTTAGAAATTTGAAAATGACTCAAAACTGACCTGGAATTTGATAGGATACTTATCATTTGTCAAATGTTGCATCTCTGCTTCTACATTCAAATCCGTCAAATTCTTAATTAATCCTCTTTTAATCTCAACCAGTTTCGTCAGATTAACAAGATTGACCATGAATTTCAATGGATAATTTCCAACGATTTCCTGATTCTTTCCAGTCAGTCTCTCGTCATCTAACCCATTCAATGGACCGCCCTTCTCTAATTTTCTAGCGACAAGTTCATGCGAACCAGATGCGGTCGATTCGGATCACGAACCGCGGCGACGAATGGGCGAACGCCGATGGGAAGTTTCGAGTTAGCTTGTTCAATGAAGTAAGCGATGCTCAGAAGGTCGGTTTTTCCGTCGAGGAGCACTTCGGTGTCACTGACAAGCGATGGTGGAATGTCGGGCTGGAATTGAGCAATTGATTTTTCATTACAGTGAACACTAATAGAAGGCCACAAGAGCCTCCAACTTTGAGCTCACATATCTCGATTGGTGTAAAAGATATGGAATAGTGGTCAACTGATAAAAAATGGGTGTTATTATGATAAACATTTTGTTAGTTGACCACTTTTAAATATCTTTTACAGGAACCGGGATATGTGAGCTAAAAGTTGGCGGCTCGGGCTGCCTATTATTAGGTTGGCGGGAAAGTCTTTGTCACTTTTTCAATAGTTTATTTCTCAAAGAAAAAATAACCGAATAATTAATTATATTGTCCATCATTATCAACAACATGTCTCCAACGTTCCCTCAATTTATGGATTCCATTGCGGTAGAATCCAGCCGGGCGTGAGGCA</canonical>
            <polymorphic>TTTGATATTTATAAAGAGCTGAGCTATTGGAAAATTCCTTCTTACATCATTAGACGATGAGAAGTACATTGTATGATCCTGAATTCCGGTCATATTAACATCGATGTGATGATTCACATGCTCCAAATCGATGATGGTCTTAGCGTACTTTTCCTGAAATTTTTAGAGATTTAGAAATTTGAAAATGACTCAAAACTGACCTGGAATTTGATAGGATACTTATCATTTGTCAAATGTTGCATCTCTGCTTCTACATTCAAATCCGTCAAATTCTTAATTAATCCTCTTTTAATCTCAACCAGTTTCGTCAGATTAACAAGATTGACCATGAATTTCAATGGATAATTTCCAACGATTTCCTGATTCTTTCCAGTCAGTCTCTCGTCATCTAACCCATTCAATGGACCGCCCTTCTCTAATTTTCTAGCGACAAGTTCATGCGAACCAGATGCGGTCGATTCGGATCACGAACCGCGGCGACGAATGGGCGAACGCCGATKGGAAGTTTCGAGTTAGCTTGTTCAATGAAGTAAGCGATGCTCAGAAGGTCGGTTTTTCCGTCGAGGAGCACTTCGGTGTCACTGACAAGCGATGGTGGAATGTCGGGCTGGAATTGAGCAATTGATTTTTCATTACAGTGAACACTAATAGAAGGCCACAAGAGCCTCCAACTTTGAGCTCACATATCTCGATTGGTGTAAAAGATATGGAATAGTGGTCAACTGATAAAAAATGGGTGTTATTATGATAAACATTTTGTTAGTTGACCACTTTTAAATATCTTTTACAGGAACCGGGATATGTGAGCTAAAAGTTGGCGGCTCGGGCTGCCTATTATTAGGTTGGCGGGAAAGTCTTTGTCACTTTTTCAATAGTTTATTTCTCAAAGAAAAAATAACCGAATAATTAATTATATTGTCCATCATTATCAACAACATGTCTCCAACGTTCCCTCAATTTATGGATTCCATTGCGGTAGAATCCAGCCGGGCGTGAGGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTCTAATTTTCTAGCGACAAG</pcr_primer_p1>
		<pcr_primer_p2>TGTTCACTGTAATGAAAAATCAA</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>TTCTCTAATTTTCTAGCGACAAGTTCATGCGAACCAGATGCGGTCGATTCGGATCACGAACCGCGGCGACGAATGGGCGAACGCCGATGGGAAGTTTCGAGTTAGCTTGTTCAATGAAGTAAGCGATGCTCAGAAGGTCGGTTTTTCCGTCGAGGAGCACTTCGGTGTCACTGACAAGCGATGGTGGAATGTCGGGCTGGAATTGAGCAATTGATTTTTCATTACAGTGAACA</canonical_amplicon>
		<polymorphic_amplicon>TTCTCTAATTTTCTAGCGACAAGTTCATGCGAACCAGATGCGGTCGATTCGGATCACGAACCGCGGCGACGAATGGGCGAACGCCGATKGGAAGTTTCGAGTTAGCTTGTTCAATGAAGTAAGCGATGCTCAGAAGGTCGGTTTTTCCGTCGAGGAGCACTTCGGTGTCACTGACAAGCGATGGTGGAATGTCGGGCTGGAATTGAGCAATTGATTTTTCATTACAGTGAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5290</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>193260</contig_pos>
        <strand></strand>
        <context>ATTTTTCCAG[T/A]WAACGACAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CACGTTTTCTATTTTTTGCTTCAGAATTCTTTTAAGCCATATTTTTCCAG</left_flank>
        <right_flank>AAACGACAAGATGGGTGATTACGTGACTCCTGGCGAGGAGCCACAAGAGC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTTAAACATTGCGGGGAAAAGACATCTGGGTTGAAAACCGGTCCTCTACGTCTTTTCTTCCTCATGTATTTCCTCATGTAATTTCTTTTTTTTAATTTGCCACCTCAAAGCAGTAATTTCTGCTTCTCTGCGTCTCTGAACAAATCCAGAGGAATCGTGCGCTCTATCGTCAATGACGTGTCTTTTCGGGATAGATCGATTCACCCAGATTGCGCAATGCAATTAGTCATGTTTTCTAGGAAATTACATACAAAATGAATATTGTCGTCGAAAATTCTTTTTTTCCTATTTCCCGCCTTTCTTTCTTTCTTTTCCTGTTGCTGCTCATGCTCCCCTGCTCCGTATCGATCCCTCTCTCCACGCGCTCCGCACTCTTTCTCCGGCCCCTTGCTATTGGGGCTCCATCAATATCTGGTCTTCGGTCCTGGTCTTCATGCTCTTTTTTCTCACGTTTTCTATTTTTTGCTTCAGAATTCTTTTAAGCCATATTTTTCCAGTAAACGACAAGATGGGTGATTACGTGACTCCTGGCGAGGAGCCACAAGAGCCAGGCATCTACCGAAGTGAGCAGATGTGTTTGGCACAGCTCTATCTTCAATCCGATGCCTCTTATCAGTGTGTTGCCGAGTTGGGAGAGCTGGGACTCGTGCAGTTTCGTGATGTGAGTGCTTTGAGTGAAATCTCTTACTCATTAAATTTTGCTTCAGTTAAACCCAGACGTCAGCTCTTTCCAACGAAAATATGTGAACGAGGTGAGACGATGTGATGAGATGGAAAGGAAATTGAGTGAGTATTTAAATTTCTATGATTTCGAGAACGAAATTTTAAATTTTAGGATTCCTGGAGCGTGAAATCAAAAAAGATCAGATTCCAATGCTAGACACCGGCGAGAATCCCGATGCGCCGTTGCCAAGAGAGATGATTGATTTAGAGGTGCTCTTCAAGAAACCAAAATTCCTTAAAACTAATAATTTTCTAGGCCACATTCGAAAAACTCG</canonical>
            <polymorphic>TGTTTAAACATTGCGGGGAAAAGACATCTGGGTTGAAAACCGGTCCTCTACGTCTTTTCTTCCTCATGTATTTCCTCATGTAATTTCTTTTTTTTAATTTGCCACCTCAAAGCAGTAATTTCTGCTTCTCTGCGTCTCTGAACAAATCCAGAGGAATCGTGCGCTCTATCGTCAATGACGTGTCTTTTCGGGATAGATCGATTCACCCAGATTGCGCAATGCAATTAGTCATGTTTTCTAGGAAATTACATACAAAATGAATATTGTCGTCGAAAATTCTTTTTTTCCTATTTCCCGCCTTTCTTTCTTTCTTTTCCTGTTGCTGCTCATGCTCCCCTGCTCCGTATCGATCCCTCTCTCCACGCGCTCCGCACTCTTTCTCCGGCCCCTTGCTATTGGGGCTCCATCAATATCTGGTCTTCGGTCCTGGTCTTCATGCTCTTTTTTCTCACGTTTTCTATTTTTTGCTTCAGAATTCTTTTAAGCCATATTTTTCCAGWAAACGACAAGATGGGTGATTACGTGACTCCTGGCGAGGAGCCACAAGAGCCAGGCATCTACCGAAGTGAGCAGATGTGTTTGGCACAGCTCTATCTTCAATCCGATGCCTCTTATCAGTGTGTTGCCGAGTTGGGAGAGCTGGGACTCGTGCAGTTTCGTGATGTGAGTGCTTTGAGTGAAATCTCTTACTCATTAAATTTTGCTTCAGTTAAACCCAGACGTCAGCTCTTTCCAACGAAAATATGTGAACGAGGTGAGACGATGTGATGAGATGGAAAGGAAATTGAGTGAGTATTTAAATTTCTATGATTTCGAGAACGAAATTTTAAATTTTAGGATTCCTGGAGCGTGAAATCAAAAAAGATCAGATTCCAATGCTAGACACCGGCGAGAATCCCGATGCGCCGTTGCCAAGAGAGATGATTGATTTAGAGGTGCTCTTCAAGAAACCAAAATTCCTTAAAACTAATAATTTTCTAGGCCACATTCGAAAAACTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 252 247</canonical_bands>
                <polymorphic_bands>748 252</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTCACGTTTTCTATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AGATTTCACTCAAAGCACTCAC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTCACGTTTTCTATTTTTTGCTTCAGAATTCTTTTAAGCCATATTTTTCCAGTAAACGACAAGATGGGTGATTACGTGACTCCTGGCGAGGAGCCACAAGAGCCAGGCATCTACCGAAGTGAGCAGATGTGTTTGGCACAGCTCTATCTTCAATCCGATGCCTCTTATCAGTGTGTTGCCGAGTTGGGAGAGCTGGGACTCGTGCAGTTTCGTGATGTGAGTGCTTTGAGTGAAATCT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTCACGTTTTCTATTTTTTGCTTCAGAATTCTTTTAAGCCATATTTTTCCAGWAAACGACAAGATGGGTGATTACGTGACTCCTGGCGAGGAGCCACAAGAGCCAGGCATCTACCGAAGTGAGCAGATGTGTTTGGCACAGCTCTATCTTCAATCCGATGCCTCTTATCAGTGTGTTGCCGAGTTGGGAGAGCTGGGACTCGTGCAGTTTCGTGATGTGAGTGCTTTGAGTGAAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5330</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>193005</contig_pos>
        <strand>+</strand>
        <context>TTTCTAGGAA[A/T]TTACATACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGATCGATTCACCCAGATTGCGCAATGCAATTAGTCATGTTTTCTAGGAA</left_flank>
        <right_flank>TTACATACAAAATGAATATTGTCGTCGAAAATTCTTTTTTTCCTATTTCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATCAGACGTTTTTCTATCTATAAAGCTATGGTTGACCTCTCTCTTGCAAGAACTTTATCTTATCATTCTGTTTCTCCCGTTATCAGGTTCATATTGCTCTCAATCTCACCCCCAATTGTGCTCCGCACTTCAGTAATATATTAATTCAAGTTTTGTTTCGAATTCTCATCGATTTCAAACGAAAATTGAGCCAAATGTTTATGTTTTGGTGGTTTTTCTAAACATTGACTGCCGCCCGCTAGGGGTTTCTAGGTGTTTAAACATTGCGGGGAAAAGACATCTGGGTTGAAAACCGGTCCTCTACGTCTTTTCTTCCTCATGTATTTCCTCATGTAATTTCTTTTTTTTAATTTGCCACCTCAAAGCAGTAATTTCTGCTTCTCTGCGTCTCTGAACAAATCCAGAGGAATCGTGCGCTCTATCGTCAATGACGTGTCTTTTCGGGATAGATCGATTCACCCAGATTGCGCAATGCAATTAGTCATGTTTTCTAGGAAATTACATACAAAATGAATATTGTCGTCGAAAATTCTTTTTTTCCTATTTCCCGCCTTTCTTTCTTTCTTTTCCTGTTGCTGCTCATGCTCCCCTGCTCCGTATCGATCCCTCTCTCCACGCGCTCCGCACTCTTTCTCCGGCCCCTTGCTATTGGGGCTCCATCAATATCTGGTCTTCGGTCCTGGTCTTCATGCTCTTTTTTCTCACGTTTTCTATTTTTTGCTTCAGAATTCTTTTAAGCCATATTTTTCCAGTAAACGACAAGATGGGTGATTACGTGACTCCTGGCGAGGAGCCACAAGAGCCAGGCATCTACCGAAGTGAGCAGATGTGTTTGGCACAGCTCTATCTTCAATCCGATGCCTCTTATCAGTGTGTTGCCGAGTTGGGAGAGCTGGGACTCGTGCAGTTTCGTGATGTGAGTGCTTTGAGTGAAATCTCTTACTCATTAAATTTTGCTTCAGTTAAACCCAGACGTCAGCTCTTTCCAACGAAAATAT</canonical>
            <polymorphic>CTATCAGACGTTTTTCTATCTATAAAGCTATGGTTGACCTCTCTCTTGCAAGAACTTTATCTTATCATTCTGTTTCTCCCGTTATCAGGTTCATATTGCTCTCAATCTCACCCCCAATTGTGCTCCGCACTTCAGTAATATATTAATTCAAGTTTTGTTTCGAATTCTCATCGATTTCAAACGAAAATTGAGCCAAATGTTTATGTTTTGGTGGTTTTTCTAAACATTGACTGCCGCCCGCTAGGGGTTTCTAGGTGTTTAAACATTGCGGGGAAAAGACATCTGGGTTGAAAACCGGTCCTCTACGTCTTTTCTTCCTCATGTATTTCCTCATGTAATTTCTTTTTTTTAATTTGCCACCTCAAAGCAGTAATTTCTGCTTCTCTGCGTCTCTGAACAAATCCAGAGGAATCGTGCGCTCTATCGTCAATGACGTGTCTTTTCGGGATAGATCGATTCACCCAGATTGCGCAATGCAATTAGTCATGTTTTCTAGGAAWTTACATACAAAATGAATATTGTCGTCGAAAATTCTTTTTTTCCTATTTCCCGCCTTTCTTTCTTTCTTTTCCTGTTGCTGCTCATGCTCCCCTGCTCCGTATCGATCCCTCTCTCCACGCGCTCCGCACTCTTTCTCCGGCCCCTTGCTATTGGGGCTCCATCAATATCTGGTCTTCGGTCCTGGTCTTCATGCTCTTTTTTCTCACGTTTTCTATTTTTTGCTTCAGAATTCTTTTAAGCCATATTTTTCCAGTAAACGACAAGATGGGTGATTACGTGACTCCTGGCGAGGAGCCACAAGAGCCAGGCATCTACCGAAGTGAGCAGATGTGTTTGGCACAGCTCTATCTTCAATCCGATGCCTCTTATCAGTGTGTTGCCGAGTTGGGAGAGCTGGGACTCGTGCAGTTTCGTGATGTGAGTGCTTTGAGTGAAATCTCTTACTCATTAAATTTTGCTTCAGTTAAACCCAGACGTCAGCTCTTTCCAACGAAAATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>223 199 151 115 106 49 31 29 23 21 21 18 14</canonical_bands>
                <polymorphic_bands>223 199 151 115 106 52 49 29 23 21 18 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAGATCGATTCACCCAGATT</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGAGCATGAAGACCAG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ATAGATCGATTCACCCAGATTGCGCAATGCAATTAGTCATGTTTTCTAGGAAATTACATACAAAATGAATATTGTCGTCGAAAATTCTTTTTTTCCTATTTCCCGCCTTTCTTTCTTTCTTTTCCTGTTGCTGCTCATGCTCCCCTGCTCCGTATCGATCCCTCTCTCCACGCGCTCCGCACTCTTTCTCCGGCCCCTTGCTATTGGGGCTCCATCAATATCTGGTCTTCGGTCCTGGTCTTCATGCTCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATAGATCGATTCACCCAGATTGCGCAATGCAATTAGTCATGTTTTCTAGGAAWTTACATACAAAATGAATATTGTCGTCGAAAATTCTTTTTTTCCTATTTCCCGCCTTTCTTTCTTTCTTTTCCTGTTGCTGCTCATGCTCCCCTGCTCCGTATCGATCCCTCTCTCCACGCGCTCCGCACTCTTTCTCCGGCCCCTTGCTATTGGGGCTCCATCAATATCTGGTCTTCGGTCCTGGTCTTCATGCTCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5331</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>192949</contig_pos>
        <strand>+</strand>
        <context>CGTGTCTTTT[C/T]GGGATAGATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAACAAATCCAGAGGAATCGTGCGCTCTATCGTCAATGACGTGTCTTTT</left_flank>
        <right_flank>GGGATAGATCGATTCACCCAGATTGCGCAATGCAATTAGTCATGTTTTCT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACACTAAACCGGTTTTTTAAAAGACGTTGCTTTTTTTTAGCTGATTGATATTTCCCTATCAGACGTTTTTCTATCTATAAAGCTATGGTTGACCTCTCTCTTGCAAGAACTTTATCTTATCATTCTGTTTCTCCCGTTATCAGGTTCATATTGCTCTCAATCTCACCCCCAATTGTGCTCCGCACTTCAGTAATATATTAATTCAAGTTTTGTTTCGAATTCTCATCGATTTCAAACGAAAATTGAGCCAAATGTTTATGTTTTGGTGGTTTTTCTAAACATTGACTGCCGCCCGCTAGGGGTTTCTAGGTGTTTAAACATTGCGGGGAAAAGACATCTGGGTTGAAAACCGGTCCTCTACGTCTTTTCTTCCTCATGTATTTCCTCATGTAATTTCTTTTTTTTAATTTGCCACCTCAAAGCAGTAATTTCTGCTTCTCTGCGTCTCTGAACAAATCCAGAGGAATCGTGCGCTCTATCGTCAATGACGTGTCTTTTCGGGATAGATCGATTCACCCAGATTGCGCAATGCAATTAGTCATGTTTTCTAGGAAATTACATACAAAATGAATATTGTCGTCGAAAATTCTTTTTTTCCTATTTCCCGCCTTTCTTTCTTTCTTTTCCTGTTGCTGCTCATGCTCCCCTGCTCCGTATCGATCCCTCTCTCCACGCGCTCCGCACTCTTTCTCCGGCCCCTTGCTATTGGGGCTCCATCAATATCTGGTCTTCGGTCCTGGTCTTCATGCTCTTTTTTCTCACGTTTTCTATTTTTTGCTTCAGAATTCTTTTAAGCCATATTTTTCCAGTAAACGACAAGATGGGTGATTACGTGACTCCTGGCGAGGAGCCACAAGAGCCAGGCATCTACCGAAGTGAGCAGATGTGTTTGGCACAGCTCTATCTTCAATCCGATGCCTCTTATCAGTGTGTTGCCGAGTTGGGAGAGCTGGGACTCGTGCAGTTTCGTGATGTGAGTGCTTTGAGTGAAATCTCTTA</canonical>
            <polymorphic>CACACTAAACCGGTTTTTTAAAAGACGTTGCTTTTTTTTAGCTGATTGATATTTCCCTATCAGACGTTTTTCTATCTATAAAGCTATGGTTGACCTCTCTCTTGCAAGAACTTTATCTTATCATTCTGTTTCTCCCGTTATCAGGTTCATATTGCTCTCAATCTCACCCCCAATTGTGCTCCGCACTTCAGTAATATATTAATTCAAGTTTTGTTTCGAATTCTCATCGATTTCAAACGAAAATTGAGCCAAATGTTTATGTTTTGGTGGTTTTTCTAAACATTGACTGCCGCCCGCTAGGGGTTTCTAGGTGTTTAAACATTGCGGGGAAAAGACATCTGGGTTGAAAACCGGTCCTCTACGTCTTTTCTTCCTCATGTATTTCCTCATGTAATTTCTTTTTTTTAATTTGCCACCTCAAAGCAGTAATTTCTGCTTCTCTGCGTCTCTGAACAAATCCAGAGGAATCGTGCGCTCTATCGTCAATGACGTGTCTTTTYGGGATAGATCGATTCACCCAGATTGCGCAATGCAATTAGTCATGTTTTCTAGGAAATTACATACAAAATGAATATTGTCGTCGAAAATTCTTTTTTTCCTATTTCCCGCCTTTCTTTCTTTCTTTTCCTGTTGCTGCTCATGCTCCCCTGCTCCGTATCGATCCCTCTCTCCACGCGCTCCGCACTCTTTCTCCGGCCCCTTGCTATTGGGGCTCCATCAATATCTGGTCTTCGGTCCTGGTCTTCATGCTCTTTTTTCTCACGTTTTCTATTTTTTGCTTCAGAATTCTTTTAAGCCATATTTTTCCAGTAAACGACAAGATGGGTGATTACGTGACTCCTGGCGAGGAGCCACAAGAGCCAGGCATCTACCGAAGTGAGCAGATGTGTTTGGCACAGCTCTATCTTCAATCCGATGCCTCTTATCAGTGTGTTGCCGAGTTGGGAGAGCTGGGACTCGTGCAGTTTCGTGATGTGAGTGCTTTGAGTGAAATCTCTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>469 459 41 31</canonical_bands>
                <polymorphic_bands>510 459 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGACATCTGGGTTGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>ACGACAATATTCATTTTGTATGTAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAGACATCTGGGTTGAAAACCGGTCCTCTACGTCTTTTCTTCCTCATGTATTTCCTCATGTAATTTCTTTTTTTTAATTTGCCACCTCAAAGCAGTAATTTCTGCTTCTCTGCGTCTCTGAACAAATCCAGAGGAATCGTGCGCTCTATCGTCAATGACGTGTCTTTTCGGGATAGATCGATTCACCCAGATTGCGCAATGCAATTAGTCATGTTTTCTAGGAAATTACATACAAAATGAATATTGTCGT</canonical_amplicon>
		<polymorphic_amplicon>AAAGACATCTGGGTTGAAAACCGGTCCTCTACGTCTTTTCTTCCTCATGTATTTCCTCATGTAATTTCTTTTTTTTAATTTGCCACCTCAAAGCAGTAATTTCTGCTTCTCTGCGTCTCTGAACAAATCCAGAGGAATCGTGCGCTCTATCGTCAATGACGTGTCTTTTYGGGATAGATCGATTCACCCAGATTGCGCAATGCAATTAGTCATGTTTTCTAGGAAATTACATACAAAATGAATATTGTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5332</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>219421</contig_pos>
        <strand>+</strand>
        <context>TTCCAGGGAC[A/C]ACATTGTTGC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCAACTATCCGCATACTCAAAAGCTTCGAATTTCTTGTTTTCCAGGGAC</left_flank>
        <right_flank>ACATTGTTGCAACGCCTAGTCATTTTGTCTGCACCTAAAGTATACAGAAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAAGTTATTTTTCACGTTAACACTTTTTCACGAATGTTTACCTAAATAGGCGTATTATGCGAGAGAAATTGCGAGACTTGCAAGACTCGCATAAAAAGTGCGAGTCTTGCACGTGAAATGAGAAATTGCGAGCATTTGCGAGAACGAGAAATTGCAAGGCGAGACAATGCGAGAATTTGCGAACGCAAGGCAAGACAAACATTTATGCAAGACAAGACAAGACCCGTCAAGACGAGACAAAAGCAAAGTCATGCAAGAAATTTCTCGCGAGACGACACTCTAGTACTTACTTGACCGTTGCTTTTTAGAATATTCGAAGCAAGGGAATGAAATGTCTGTGTGTCTGTATTGTCTAGTTAGTTCAGAAAATTCAAGTTTTCTTTGTTTTCAGATTTCTTTCCTTGATTTCTCAATCTCGACTCAACAGCTACAAAAATTAAAAAAGGCTTCAACTATCCGCATACTCAAAAGCTTCGAATTTCTTGTTTTCCAGGGACCACATTGTTGCAACGCCTAGTCATTTTGTCTGCACCTAAAGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGTGTCCCTTCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGCACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGTATGCAATTCTCGATTGTTTACTTCCTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATCATGATTGTCTCGTTCATCTGGAGATTCAATCAATGGAATATTCTGAAACTGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTCT</canonical>
            <polymorphic>TTGAAGTTATTTTTCACGTTAACACTTTTTCACGAATGTTTACCTAAATAGGCGTATTATGCGAGAGAAATTGCGAGACTTGCAAGACTCGCATAAAAAGTGCGAGTCTTGCACGTGAAATGAGAAATTGCGAGCATTTGCGAGAACGAGAAATTGCAAGGCGAGACAATGCGAGAATTTGCGAACGCAAGGCAAGACAAACATTTATGCAAGACAAGACAAGACCCGTCAAGACGAGACAAAAGCAAAGTCATGCAAGAAATTTCTCGCGAGACGACACTCTAGTACTTACTTGACCGTTGCTTTTTAGAATATTCGAAGCAAGGGAATGAAATGTCTGTGTGTCTGTATTGTCTAGTTAGTTCAGAAAATTCAAGTTTTCTTTGTTTTCAGATTTCTTTCCTTGATTTCTCAATCTCGACTCAACAGCTACAAAAATTAAAAAAGGCTTCAACTATCCGCATACTCAAAAGCTTCGAATTTCTTGTTTTCCAGGGACMACATTGTTGCAACGCCTAGTCATTTTGTCTGCACCTAAAGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGTGTCCCTTCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGCACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGTATGCAATTCTCGATTGTTTACTTCCTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATCATGATTGTCTCGTTCATCTGGAGATTCAATCAATGGAATATTCTGAAACTGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>496 265 239</canonical_bands>
                <polymorphic_bands>761 239</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>496 265 239</canonical_bands>
                <polymorphic_bands>761 239</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>497 266 237</canonical_bands>
                <polymorphic_bands>763 237</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>162 157 143 128 70 63 57 57 32 25 21 16 14 12 11 10 8 8 4 2</canonical_bands>
                <polymorphic_bands>189 162 143 128 70 63 57 57 25 21 16 14 12 11 10 8 8 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAGTTTTCTTTGTTTTCAGAT</pcr_primer_p1>
		<pcr_primer_p2>CGGTATACTGTGGTTTTAGAATAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCAAGTTTTCTTTGTTTTCAGATTTCTTTCCTTGATTTCTCAATCTCGACTCAACAGCTACAAAAATTAAAAAAGGCTTCAACTATCCGCATACTCAAAAGCTTCGAATTTCTTGTTTTCCAGGGACCACATTGTTGCAACGCCTAGTCATTTTGTCTGCACCTAAAGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCG</canonical_amplicon>
		<polymorphic_amplicon>TCAAGTTTTCTTTGTTTTCAGATTTCTTTCCTTGATTTCTCAATCTCGACTCAACAGCTACAAAAATTAAAAAAGGCTTCAACTATCCGCATACTCAAAAGCTTCGAATTTCTTGTTTTCCAGGGACMACATTGTTGCAACGCCTAGTCATTTTGTCTGCACCTAAAGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5333</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>219433</contig_pos>
        <strand>+</strand>
        <context>CATTGTTGCA[A/C]CGCCTAGTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATACTCAAAAGCTTCGAATTTCTTGTTTTCCAGGGACCACATTGTTGCA</left_flank>
        <right_flank>CGCCTAGTCATTTTGTCTGCACCTAAAGTATACAGAAAAACACAAAAATG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCACGTTAACACTTTTTCACGAATGTTTACCTAAATAGGCGTATTATGCGAGAGAAATTGCGAGACTTGCAAGACTCGCATAAAAAGTGCGAGTCTTGCACGTGAAATGAGAAATTGCGAGCATTTGCGAGAACGAGAAATTGCAAGGCGAGACAATGCGAGAATTTGCGAACGCAAGGCAAGACAAACATTTATGCAAGACAAGACAAGACCCGTCAAGACGAGACAAAAGCAAAGTCATGCAAGAAATTTCTCGCGAGACGACACTCTAGTACTTACTTGACCGTTGCTTTTTAGAATATTCGAAGCAAGGGAATGAAATGTCTGTGTGTCTGTATTGTCTAGTTAGTTCAGAAAATTCAAGTTTTCTTTGTTTTCAGATTTCTTTCCTTGATTTCTCAATCTCGACTCAACAGCTACAAAAATTAAAAAAGGCTTCAACTATCCGCATACTCAAAAGCTTCGAATTTCTTGTTTTCCAGGGACCACATTGTTGCAACGCCTAGTCATTTTGTCTGCACCTAAAGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGTGTCCCTTCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGCACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGTATGCAATTCTCGATTGTTTACTTCCTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATCATGATTGTCTCGTTCATCTGGAGATTCAATCAATGGAATATTCTGAAACTGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTCTATTCATTTTCAA</canonical>
            <polymorphic>TTCACGTTAACACTTTTTCACGAATGTTTACCTAAATAGGCGTATTATGCGAGAGAAATTGCGAGACTTGCAAGACTCGCATAAAAAGTGCGAGTCTTGCACGTGAAATGAGAAATTGCGAGCATTTGCGAGAACGAGAAATTGCAAGGCGAGACAATGCGAGAATTTGCGAACGCAAGGCAAGACAAACATTTATGCAAGACAAGACAAGACCCGTCAAGACGAGACAAAAGCAAAGTCATGCAAGAAATTTCTCGCGAGACGACACTCTAGTACTTACTTGACCGTTGCTTTTTAGAATATTCGAAGCAAGGGAATGAAATGTCTGTGTGTCTGTATTGTCTAGTTAGTTCAGAAAATTCAAGTTTTCTTTGTTTTCAGATTTCTTTCCTTGATTTCTCAATCTCGACTCAACAGCTACAAAAATTAAAAAAGGCTTCAACTATCCGCATACTCAAAAGCTTCGAATTTCTTGTTTTCCAGGGACCACATTGTTGCAMCGCCTAGTCATTTTGTCTGCACCTAAAGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGTGTCCCTTCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGCACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGTATGCAATTCTCGATTGTTTACTTCCTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATCATGATTGTCTCGTTCATCTGGAGATTCAATCAATGGAATATTCTGAAACTGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTCTATTCATTTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAGTTTTCTTTGTTTTCAGAT</pcr_primer_p1>
		<pcr_primer_p2>CGGTATACTGTGGTTTTAGAATAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCAAGTTTTCTTTGTTTTCAGATTTCTTTCCTTGATTTCTCAATCTCGACTCAACAGCTACAAAAATTAAAAAAGGCTTCAACTATCCGCATACTCAAAAGCTTCGAATTTCTTGTTTTCCAGGGACCACATTGTTGCAACGCCTAGTCATTTTGTCTGCACCTAAAGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCG</canonical_amplicon>
		<polymorphic_amplicon>TCAAGTTTTCTTTGTTTTCAGATTTCTTTCCTTGATTTCTCAATCTCGACTCAACAGCTACAAAAATTAAAAAAGGCTTCAACTATCCGCATACTCAAAAGCTTCGAATTTCTTGTTTTCCAGGGACCACATTGTTGCAMCGCCTAGTCATTTTGTCTGCACCTAAAGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5334</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>219459</contig_pos>
        <strand>+</strand>
        <context>TCTGCACCTA[A/G]AGTATACAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCCAGGGACCACATTGTTGCAACGCCTAGTCATTTTGTCTGCACCTA</left_flank>
        <right_flank>AGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTACCTAAATAGGCGTATTATGCGAGAGAAATTGCGAGACTTGCAAGACTCGCATAAAAAGTGCGAGTCTTGCACGTGAAATGAGAAATTGCGAGCATTTGCGAGAACGAGAAATTGCAAGGCGAGACAATGCGAGAATTTGCGAACGCAAGGCAAGACAAACATTTATGCAAGACAAGACAAGACCCGTCAAGACGAGACAAAAGCAAAGTCATGCAAGAAATTTCTCGCGAGACGACACTCTAGTACTTACTTGACCGTTGCTTTTTAGAATATTCGAAGCAAGGGAATGAAATGTCTGTGTGTCTGTATTGTCTAGTTAGTTCAGAAAATTCAAGTTTTCTTTGTTTTCAGATTTCTTTCCTTGATTTCTCAATCTCGACTCAACAGCTACAAAAATTAAAAAAGGCTTCAACTATCCGCATACTCAAAAGCTTCGAATTTCTTGTTTTCCAGGGACCACATTGTTGCAACGCCTAGTCATTTTGTCTGCACCTAAAGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGTGTCCCTTCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGCACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGTATGCAATTCTCGATTGTTTACTTCCTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATCATGATTGTCTCGTTCATCTGGAGATTCAATCAATGGAATATTCTGAAACTGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTCTATTCATTTTCAAATTCTCCATCATTTCTCTGGAGTATC</canonical>
            <polymorphic>TTTACCTAAATAGGCGTATTATGCGAGAGAAATTGCGAGACTTGCAAGACTCGCATAAAAAGTGCGAGTCTTGCACGTGAAATGAGAAATTGCGAGCATTTGCGAGAACGAGAAATTGCAAGGCGAGACAATGCGAGAATTTGCGAACGCAAGGCAAGACAAACATTTATGCAAGACAAGACAAGACCCGTCAAGACGAGACAAAAGCAAAGTCATGCAAGAAATTTCTCGCGAGACGACACTCTAGTACTTACTTGACCGTTGCTTTTTAGAATATTCGAAGCAAGGGAATGAAATGTCTGTGTGTCTGTATTGTCTAGTTAGTTCAGAAAATTCAAGTTTTCTTTGTTTTCAGATTTCTTTCCTTGATTTCTCAATCTCGACTCAACAGCTACAAAAATTAAAAAAGGCTTCAACTATCCGCATACTCAAAAGCTTCGAATTTCTTGTTTTCCAGGGACCACATTGTTGCAACGCCTAGTCATTTTGTCTGCACCTARAGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGTGTCCCTTCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGCACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGTATGCAATTCTCGATTGTTTACTTCCTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATCATGATTGTCTCGTTCATCTGGAGATTCAATCAATGGAATATTCTGAAACTGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTCTATTCATTTTCAAATTCTCCATCATTTCTCTGGAGTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAGTTTTCTTTGTTTTCAGAT</pcr_primer_p1>
		<pcr_primer_p2>CGGTATACTGTGGTTTTAGAATAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCAAGTTTTCTTTGTTTTCAGATTTCTTTCCTTGATTTCTCAATCTCGACTCAACAGCTACAAAAATTAAAAAAGGCTTCAACTATCCGCATACTCAAAAGCTTCGAATTTCTTGTTTTCCAGGGACCACATTGTTGCAACGCCTAGTCATTTTGTCTGCACCTAAAGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCG</canonical_amplicon>
		<polymorphic_amplicon>TCAAGTTTTCTTTGTTTTCAGATTTCTTTCCTTGATTTCTCAATCTCGACTCAACAGCTACAAAAATTAAAAAAGGCTTCAACTATCCGCATACTCAAAAGCTTCGAATTTCTTGTTTTCCAGGGACCACATTGTTGCAACGCCTAGTCATTTTGTCTGCACCTARAGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5335</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>219493</contig_pos>
        <strand>+</strand>
        <context>GATTACAAAT[G/T]ATTTCATATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTTGTCTGCACCTAAAGTATACAGAAAAACACAAAAATGATTACAAAT</left_flank>
        <right_flank>ATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGAGACTTGCAAGACTCGCATAAAAAGTGCGAGTCTTGCACGTGAAATGAGAAATTGCGAGCATTTGCGAGAACGAGAAATTGCAAGGCGAGACAATGCGAGAATTTGCGAACGCAAGGCAAGACAAACATTTATGCAAGACAAGACAAGACCCGTCAAGACGAGACAAAAGCAAAGTCATGCAAGAAATTTCTCGCGAGACGACACTCTAGTACTTACTTGACCGTTGCTTTTTAGAATATTCGAAGCAAGGGAATGAAATGTCTGTGTGTCTGTATTGTCTAGTTAGTTCAGAAAATTCAAGTTTTCTTTGTTTTCAGATTTCTTTCCTTGATTTCTCAATCTCGACTCAACAGCTACAAAAATTAAAAAAGGCTTCAACTATCCGCATACTCAAAAGCTTCGAATTTCTTGTTTTCCAGGGACCACATTGTTGCAACGCCTAGTCATTTTGTCTGCACCTAAAGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGTGTCCCTTCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGCACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGTATGCAATTCTCGATTGTTTACTTCCTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATCATGATTGTCTCGTTCATCTGGAGATTCAATCAATGGAATATTCTGAAACTGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTCTATTCATTTTCAAATTCTCCATCATTTCTCTGGAGTATCACTTTCCGATGTCTCTTCTCAGCTATTCAAATTG</canonical>
            <polymorphic>GCGAGACTTGCAAGACTCGCATAAAAAGTGCGAGTCTTGCACGTGAAATGAGAAATTGCGAGCATTTGCGAGAACGAGAAATTGCAAGGCGAGACAATGCGAGAATTTGCGAACGCAAGGCAAGACAAACATTTATGCAAGACAAGACAAGACCCGTCAAGACGAGACAAAAGCAAAGTCATGCAAGAAATTTCTCGCGAGACGACACTCTAGTACTTACTTGACCGTTGCTTTTTAGAATATTCGAAGCAAGGGAATGAAATGTCTGTGTGTCTGTATTGTCTAGTTAGTTCAGAAAATTCAAGTTTTCTTTGTTTTCAGATTTCTTTCCTTGATTTCTCAATCTCGACTCAACAGCTACAAAAATTAAAAAAGGCTTCAACTATCCGCATACTCAAAAGCTTCGAATTTCTTGTTTTCCAGGGACCACATTGTTGCAACGCCTAGTCATTTTGTCTGCACCTAAAGTATACAGAAAAACACAAAAATGATTACAAATKATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGTGTCCCTTCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGCACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGTATGCAATTCTCGATTGTTTACTTCCTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATCATGATTGTCTCGTTCATCTGGAGATTCAATCAATGGAATATTCTGAAACTGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTCTATTCATTTTCAAATTCTCCATCATTTCTCTGGAGTATCACTTTCCGATGTCTCTTCTCAGCTATTCAAATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAACAGCTACAAAAATTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GGAACTTACTTGAATTAGTCATCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCAACAGCTACAAAAATTAAAAAAGGCTTCAACTATCCGCATACTCAAAAGCTTCGAATTTCTTGTTTTCCAGGGACCACATTGTTGCAACGCCTAGTCATTTTGTCTGCACCTAAAGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGTGTCCCTTCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCC</canonical_amplicon>
		<polymorphic_amplicon>CTCAACAGCTACAAAAATTAAAAAAGGCTTCAACTATCCGCATACTCAAAAGCTTCGAATTTCTTGTTTTCCAGGGACCACATTGTTGCAACGCCTAGTCATTTTGTCTGCACCTAAAGTATACAGAAAAACACAAAAATGATTACAAATKATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGTGTCCCTTCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5336</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>219600</contig_pos>
        <strand></strand>
        <context>TCCTATATTG[C/T]YCCATAAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTG</left_flank>
        <right_flank>ACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCGAACGCAAGGCAAGACAAACATTTATGCAAGACAAGACAAGACCCGTCAAGACGAGACAAAAGCAAAGTCATGCAAGAAATTTCTCGCGAGACGACACTCTAGTACTTACTTGACCGTTGCTTTTTAGAATATTCGAAGCAAGGGAATGAAATGTCTGTGTGTCTGTATTGTCTAGTTAGTTCAGAAAATTCAAGTTTTCTTTGTTTTCAGATTTCTTTCCTTGATTTCTCAATCTCGACTCAACAGCTACAAAAATTAAAAAAGGCTTCAACTATCCGCATACTCAAAAGCTTCGAATTTCTTGTTTTCCAGGGACCACATTGTTGCAACGCCTAGTCATTTTGTCTGCACCTAAAGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGTGTCCCTTCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGCACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGTATGCAATTCTCGATTGTTTACTTCCTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATCATGATTGTCTCGTTCATCTGGAGATTCAATCAATGGAATATTCTGAAACTGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTCTATTCATTTTCAAATTCTCCATCATTTCTCTGGAGTATCACTTTCCGATGTCTCTTCTCAGCTATTCAAATTGGATAACAATGGCATTTGGGAGCCACGTGTCATTGATTCGAATCAAGTGATTCTATCGATTCAATCCAATTTCCACTGTCAAAAAGGATTCTATGGACCAATTTGTGA</canonical>
            <polymorphic>TGCGAACGCAAGGCAAGACAAACATTTATGCAAGACAAGACAAGACCCGTCAAGACGAGACAAAAGCAAAGTCATGCAAGAAATTTCTCGCGAGACGACACTCTAGTACTTACTTGACCGTTGCTTTTTAGAATATTCGAAGCAAGGGAATGAAATGTCTGTGTGTCTGTATTGTCTAGTTAGTTCAGAAAATTCAAGTTTTCTTTGTTTTCAGATTTCTTTCCTTGATTTCTCAATCTCGACTCAACAGCTACAAAAATTAAAAAAGGCTTCAACTATCCGCATACTCAAAAGCTTCGAATTTCTTGTTTTCCAGGGACCACATTGTTGCAACGCCTAGTCATTTTGTCTGCACCTAAAGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGTGTCCCTTCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGYACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGTATGCAATTCTCGATTGTTTACTTCCTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATCATGATTGTCTCGTTCATCTGGAGATTCAATCAATGGAATATTCTGAAACTGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTCTATTCATTTTCAAATTCTCCATCATTTCTCTGGAGTATCACTTTCCGATGTCTCTTCTCAGCTATTCAAATTGGATAACAATGGCATTTGGGAGCCACGTGTCATTGATTCGAATCAAGTGATTCTATCGATTCAATCCAATTTCCACTGTCAAAAAGGATTCTATGGACCAATTTGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>383 254 118 95 52 46 30 22</canonical_bands>
                <polymorphic_bands>383 254 213 52 46 30 22</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>157 143 128 100 63 57 57 57 53 32 32 26 25 21 20 12 10 4 2 1</canonical_bands>
                <polymorphic_bands>200 157 128 100 63 57 57 53 32 32 26 25 21 20 12 10 4 2 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACACAAAAATGATTACAAA</pcr_primer_p1>
		<pcr_primer_p2>ACTGATATAATGAATGGGTACTTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGTGTCCCTTCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGCACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGT</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGTGTCCCTTCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGYACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5341</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>219738</contig_pos>
        <strand>+</strand>
        <context>TTGTTTACTT[C/T]CTTGTGTTTM</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGAAAGTACCCATTCATTATATCAGTATGCAATTCTCGATTGTTTACTT</left_flank>
        <right_flank>CTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGCAAGGGAATGAAATGTCTGTGTGTCTGTATTGTCTAGTTAGTTCAGAAAATTCAAGTTTTCTTTGTTTTCAGATTTCTTTCCTTGATTTCTCAATCTCGACTCAACAGCTACAAAAATTAAAAAAGGCTTCAACTATCCGCATACTCAAAAGCTTCGAATTTCTTGTTTTCCAGGGACCACATTGTTGCAACGCCTAGTCATTTTGTCTGCACCTAAAGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGTGTCCCTTCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGCACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGTATGCAATTCTCGATTGTTTACTTCCTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATCATGATTGTCTCGTTCATCTGGAGATTCAATCAATGGAATATTCTGAAACTGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTCTATTCATTTTCAAATTCTCCATCATTTCTCTGGAGTATCACTTTCCGATGTCTCTTCTCAGCTATTCAAATTGGATAACAATGGCATTTGGGAGCCACGTGTCATTGATTCGAATCAAGTGATTCTATCGATTCAATCCAATTTCCACTGTCAAAAAGGATTCTATGGACCAATTTGTGAACGTCGTTCGAGAAGCACTTCTACTATTAAAACAACGACTTCTATTCCAACTGCCACGTCATCACCATTTCATCTTCCAATCAGTGAGGTCCAAATTAATAAGTAAGTTTTCAATTTCTTCTTCTTTAATCCAAATCT</canonical>
            <polymorphic>GAAGCAAGGGAATGAAATGTCTGTGTGTCTGTATTGTCTAGTTAGTTCAGAAAATTCAAGTTTTCTTTGTTTTCAGATTTCTTTCCTTGATTTCTCAATCTCGACTCAACAGCTACAAAAATTAAAAAAGGCTTCAACTATCCGCATACTCAAAAGCTTCGAATTTCTTGTTTTCCAGGGACCACATTGTTGCAACGCCTAGTCATTTTGTCTGCACCTAAAGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGTGTCCCTTCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGCACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGTATGCAATTCTCGATTGTTTACTTYCTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATCATGATTGTCTCGTTCATCTGGAGATTCAATCAATGGAATATTCTGAAACTGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTCTATTCATTTTCAAATTCTCCATCATTTCTCTGGAGTATCACTTTCCGATGTCTCTTCTCAGCTATTCAAATTGGATAACAATGGCATTTGGGAGCCACGTGTCATTGATTCGAATCAAGTGATTCTATCGATTCAATCCAATTTCCACTGTCAAAAAGGATTCTATGGACCAATTTGTGAACGTCGTTCGAGAAGCACTTCTACTATTAAAACAACGACTTCTATTCCAACTGCCACGTCATCACCATTTCATCTTCCAATCAGTGAGGTCCAAATTAATAAGTAAGTTTTCAATTTCTTCTTCTTTAATCCAAATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCGAAACAATGATGACTAAT</pcr_primer_p1>
		<pcr_primer_p2>GATCAGATGTCAATTTGAGAGATA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGCACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGTATGCAATTCTCGATTGTTTACTTCCTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATC</canonical_amplicon>
		<polymorphic_amplicon>AACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGCACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGTATGCAATTCTCGATTGTTTACTTYCTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5342</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>219748</contig_pos>
        <strand>+</strand>
        <context>YCTTGTGTTT[A/C]TTATTCCATC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCATTCATTATATCAGTATGCAATTCTCGATTGTTTACTTCCTTGTGTTT</left_flank>
        <right_flank>TTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGAAATGTCTGTGTGTCTGTATTGTCTAGTTAGTTCAGAAAATTCAAGTTTTCTTTGTTTTCAGATTTCTTTCCTTGATTTCTCAATCTCGACTCAACAGCTACAAAAATTAAAAAAGGCTTCAACTATCCGCATACTCAAAAGCTTCGAATTTCTTGTTTTCCAGGGACCACATTGTTGCAACGCCTAGTCATTTTGTCTGCACCTAAAGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGTGTCCCTTCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGCACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGTATGCAATTCTCGATTGTTTACTTCCTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATCATGATTGTCTCGTTCATCTGGAGATTCAATCAATGGAATATTCTGAAACTGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTCTATTCATTTTCAAATTCTCCATCATTTCTCTGGAGTATCACTTTCCGATGTCTCTTCTCAGCTATTCAAATTGGATAACAATGGCATTTGGGAGCCACGTGTCATTGATTCGAATCAAGTGATTCTATCGATTCAATCCAATTTCCACTGTCAAAAAGGATTCTATGGACCAATTTGTGAACGTCGTTCGAGAAGCACTTCTACTATTAAAACAACGACTTCTATTCCAACTGCCACGTCATCACCATTTCATCTTCCAATCAGTGAGGTCCAAATTAATAAGTAAGTTTTCAATTTCTTCTTCTTTAATCCAAATCTATAATAAATA</canonical>
            <polymorphic>AATGAAATGTCTGTGTGTCTGTATTGTCTAGTTAGTTCAGAAAATTCAAGTTTTCTTTGTTTTCAGATTTCTTTCCTTGATTTCTCAATCTCGACTCAACAGCTACAAAAATTAAAAAAGGCTTCAACTATCCGCATACTCAAAAGCTTCGAATTTCTTGTTTTCCAGGGACCACATTGTTGCAACGCCTAGTCATTTTGTCTGCACCTAAAGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGTGTCCCTTCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGCACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGTATGCAATTCTCGATTGTTTACTTCCTTGTGTTTMTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATCATGATTGTCTCGTTCATCTGGAGATTCAATCAATGGAATATTCTGAAACTGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTCTATTCATTTTCAAATTCTCCATCATTTCTCTGGAGTATCACTTTCCGATGTCTCTTCTCAGCTATTCAAATTGGATAACAATGGCATTTGGGAGCCACGTGTCATTGATTCGAATCAAGTGATTCTATCGATTCAATCCAATTTCCACTGTCAAAAAGGATTCTATGGACCAATTTGTGAACGTCGTTCGAGAAGCACTTCTACTATTAAAACAACGACTTCTATTCCAACTGCCACGTCATCACCATTTCATCTTCCAATCAGTGAGGTCCAAATTAATAAGTAAGTTTTCAATTTCTTCTTCTTTAATCCAAATCTATAATAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCGAAACAATGATGACTAAT</pcr_primer_p1>
		<pcr_primer_p2>GATCAGATGTCAATTTGAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGCACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGTATGCAATTCTCGATTGTTTACTTCCTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATC</canonical_amplicon>
		<polymorphic_amplicon>AACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGCACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGTATGCAATTCTCGATTGTTTACTTCCTTGTGTTTMTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5344</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>219862</contig_pos>
        <strand>+</strand>
        <context>TGTACGTCTT[C/T]TRGCATATGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGTTCATCTGGAGATTCAATCAATGGAATATTCTGAAACTGTACGTCTT</left_flank>
        <right_flank>TAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAGGCTTCAACTATCCGCATACTCAAAAGCTTCGAATTTCTTGTTTTCCAGGGACCACATTGTTGCAACGCCTAGTCATTTTGTCTGCACCTAAAGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGTGTCCCTTCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGCACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGTATGCAATTCTCGATTGTTTACTTCCTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATCATGATTGTCTCGTTCATCTGGAGATTCAATCAATGGAATATTCTGAAACTGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTCTATTCATTTTCAAATTCTCCATCATTTCTCTGGAGTATCACTTTCCGATGTCTCTTCTCAGCTATTCAAATTGGATAACAATGGCATTTGGGAGCCACGTGTCATTGATTCGAATCAAGTGATTCTATCGATTCAATCCAATTTCCACTGTCAAAAAGGATTCTATGGACCAATTTGTGAACGTCGTTCGAGAAGCACTTCTACTATTAAAACAACGACTTCTATTCCAACTGCCACGTCATCACCATTTCATCTTCCAATCAGTGAGGTCCAAATTAATAAGTAAGTTTTCAATTTCTTCTTCTTTAATCCAAATCTATAATAAATATTTTTCAGCCTAATCATCTATGCAGTTCTATCATCAGTGGTCCTTCTTCTAATCATTGCCAACTGTTTCCTGTGTTTCTGTCGTCCTAAACCATCCAAATACATTGATTACACA</canonical>
            <polymorphic>AAAAAGGCTTCAACTATCCGCATACTCAAAAGCTTCGAATTTCTTGTTTTCCAGGGACCACATTGTTGCAACGCCTAGTCATTTTGTCTGCACCTAAAGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGTGTCCCTTCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGCACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGTATGCAATTCTCGATTGTTTACTTCCTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATCATGATTGTCTCGTTCATCTGGAGATTCAATCAATGGAATATTCTGAAACTGTACGTCTTYTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTCTATTCATTTTCAAATTCTCCATCATTTCTCTGGAGTATCACTTTCCGATGTCTCTTCTCAGCTATTCAAATTGGATAACAATGGCATTTGGGAGCCACGTGTCATTGATTCGAATCAAGTGATTCTATCGATTCAATCCAATTTCCACTGTCAAAAAGGATTCTATGGACCAATTTGTGAACGTCGTTCGAGAAGCACTTCTACTATTAAAACAACGACTTCTATTCCAACTGCCACGTCATCACCATTTCATCTTCCAATCAGTGAGGTCCAAATTAATAAGTAAGTTTTCAATTTCTTCTTCTTTAATCCAAATCTATAATAAATATTTTTCAGCCTAATCATCTATGCAGTTCTATCATCAGTGGTCCTTCTTCTAATCATTGCCAACTGTTTCCTGTGTTTCTGTCGTCCTAAACCATCCAAATACATTGATTACACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGCAATTCTCGATTGTTTACT</pcr_primer_p1>
		<pcr_primer_p2>GATGGAGAATTTGAAAATGAATA</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>TATGCAATTCTCGATTGTTTACTTCCTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATCATGATTGTCTCGTTCATCTGGAGATTCAATCAATGGAATATTCTGAAACTGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTCTATTCATTTTCAAATTCTCCATC</canonical_amplicon>
		<polymorphic_amplicon>TATGCAATTCTCGATTGTTTACTTCCTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATCATGATTGTCTCGTTCATCTGGAGATTCAATCAATGGAATATTCTGAAACTGTACGTCTTYTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTCTATTCATTTTCAAATTCTCCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5345</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>219864</contig_pos>
        <strand>+</strand>
        <context>TACGTCTTYT[A/G]GCATATGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTCATCTGGAGATTCAATCAATGGAATATTCTGAAACTGTACGTCTTTT</left_flank>
        <right_flank>GCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGGCTTCAACTATCCGCATACTCAAAAGCTTCGAATTTCTTGTTTTCCAGGGACCACATTGTTGCAACGCCTAGTCATTTTGTCTGCACCTAAAGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGTGTCCCTTCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGCACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGTATGCAATTCTCGATTGTTTACTTCCTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATCATGATTGTCTCGTTCATCTGGAGATTCAATCAATGGAATATTCTGAAACTGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTCTATTCATTTTCAAATTCTCCATCATTTCTCTGGAGTATCACTTTCCGATGTCTCTTCTCAGCTATTCAAATTGGATAACAATGGCATTTGGGAGCCACGTGTCATTGATTCGAATCAAGTGATTCTATCGATTCAATCCAATTTCCACTGTCAAAAAGGATTCTATGGACCAATTTGTGAACGTCGTTCGAGAAGCACTTCTACTATTAAAACAACGACTTCTATTCCAACTGCCACGTCATCACCATTTCATCTTCCAATCAGTGAGGTCCAAATTAATAAGTAAGTTTTCAATTTCTTCTTCTTTAATCCAAATCTATAATAAATATTTTTCAGCCTAATCATCTATGCAGTTCTATCATCAGTGGTCCTTCTTCTAATCATTGCCAACTGTTTCCTGTGTTTCTGTCGTCCTAAACCATCCAAATACATTGATTACACATT</canonical>
            <polymorphic>AAAGGCTTCAACTATCCGCATACTCAAAAGCTTCGAATTTCTTGTTTTCCAGGGACCACATTGTTGCAACGCCTAGTCATTTTGTCTGCACCTAAAGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGTGTCCCTTCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGCACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGTATGCAATTCTCGATTGTTTACTTCCTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATCATGATTGTCTCGTTCATCTGGAGATTCAATCAATGGAATATTCTGAAACTGTACGTCTTTTRGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTCTATTCATTTTCAAATTCTCCATCATTTCTCTGGAGTATCACTTTCCGATGTCTCTTCTCAGCTATTCAAATTGGATAACAATGGCATTTGGGAGCCACGTGTCATTGATTCGAATCAAGTGATTCTATCGATTCAATCCAATTTCCACTGTCAAAAAGGATTCTATGGACCAATTTGTGAACGTCGTTCGAGAAGCACTTCTACTATTAAAACAACGACTTCTATTCCAACTGCCACGTCATCACCATTTCATCTTCCAATCAGTGAGGTCCAAATTAATAAGTAAGTTTTCAATTTCTTCTTCTTTAATCCAAATCTATAATAAATATTTTTCAGCCTAATCATCTATGCAGTTCTATCATCAGTGGTCCTTCTTCTAATCATTGCCAACTGTTTCCTGTGTTTCTGTCGTCCTAAACCATCCAAATACATTGATTACACATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGCAATTCTCGATTGTTTACT</pcr_primer_p1>
		<pcr_primer_p2>GATGGAGAATTTGAAAATGAATA</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>TATGCAATTCTCGATTGTTTACTTCCTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATCATGATTGTCTCGTTCATCTGGAGATTCAATCAATGGAATATTCTGAAACTGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTCTATTCATTTTCAAATTCTCCATC</canonical_amplicon>
		<polymorphic_amplicon>TATGCAATTCTCGATTGTTTACTTCCTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATCATGATTGTCTCGTTCATCTGGAGATTCAATCAATGGAATATTCTGAAACTGTACGTCTTTTRGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTCTATTCATTTTCAAATTCTCCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5346</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>219920</contig_pos>
        <strand>+</strand>
        <context>AATCAACTTT[C/T]TATTCATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTT</left_flank>
        <right_flank>TATTCATTTTCAAATTCTCCATCATTTCTCTGGAGTATCACTTTCCGATG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACATTGTTGCAACGCCTAGTCATTTTGTCTGCACCTAAAGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGTGTCCCTTCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGCACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGTATGCAATTCTCGATTGTTTACTTCCTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATCATGATTGTCTCGTTCATCTGGAGATTCAATCAATGGAATATTCTGAAACTGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTCTATTCATTTTCAAATTCTCCATCATTTCTCTGGAGTATCACTTTCCGATGTCTCTTCTCAGCTATTCAAATTGGATAACAATGGCATTTGGGAGCCACGTGTCATTGATTCGAATCAAGTGATTCTATCGATTCAATCCAATTTCCACTGTCAAAAAGGATTCTATGGACCAATTTGTGAACGTCGTTCGAGAAGCACTTCTACTATTAAAACAACGACTTCTATTCCAACTGCCACGTCATCACCATTTCATCTTCCAATCAGTGAGGTCCAAATTAATAAGTAAGTTTTCAATTTCTTCTTCTTTAATCCAAATCTATAATAAATATTTTTCAGCCTAATCATCTATGCAGTTCTATCATCAGTGGTCCTTCTTCTAATCATTGCCAACTGTTTCCTGTGTTTCTGTCGTCCTAAACCATCCAAATACATTGATTACACATTCCAAAACGTCTTCCCAATGGATGAATTCTTCCCAATGGAGAAAACCATCGGATCAC</canonical>
            <polymorphic>CACATTGTTGCAACGCCTAGTCATTTTGTCTGCACCTAAAGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGTGTCCCTTCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGCACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGTATGCAATTCTCGATTGTTTACTTCCTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATCATGATTGTCTCGTTCATCTGGAGATTCAATCAATGGAATATTCTGAAACTGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTYTATTCATTTTCAAATTCTCCATCATTTCTCTGGAGTATCACTTTCCGATGTCTCTTCTCAGCTATTCAAATTGGATAACAATGGCATTTGGGAGCCACGTGTCATTGATTCGAATCAAGTGATTCTATCGATTCAATCCAATTTCCACTGTCAAAAAGGATTCTATGGACCAATTTGTGAACGTCGTTCGAGAAGCACTTCTACTATTAAAACAACGACTTCTATTCCAACTGCCACGTCATCACCATTTCATCTTCCAATCAGTGAGGTCCAAATTAATAAGTAAGTTTTCAATTTCTTCTTCTTTAATCCAAATCTATAATAAATATTTTTCAGCCTAATCATCTATGCAGTTCTATCATCAGTGGTCCTTCTTCTAATCATTGCCAACTGTTTCCTGTGTTTCTGTCGTCCTAAACCATCCAAATACATTGATTACACATTCCAAAACGTCTTCCCAATGGATGAATTCTTCCCAATGGAGAAAACCATCGGATCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAATATTCTGAAACTGTACGTC</pcr_primer_p1>
		<pcr_primer_p2>ATAGAATCCTTTTTGACAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAATATTCTGAAACTGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTCTATTCATTTTCAAATTCTCCATCATTTCTCTGGAGTATCACTTTCCGATGTCTCTTCTCAGCTATTCAAATTGGATAACAATGGCATTTGGGAGCCACGTGTCATTGATTCGAATCAAGTGATTCTATCGATTCAATCCAATTTCCACTGTCAAAAAGGATTCTAT</canonical_amplicon>
		<polymorphic_amplicon>GGAATATTCTGAAACTGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTYTATTCATTTTCAAATTCTCCATCATTTCTCTGGAGTATCACTTTCCGATGTCTCTTCTCAGCTATTCAAATTGGATAACAATGGCATTTGGGAGCCACGTGTCATTGATTCGAATCAAGTGATTCTATCGATTCAATCCAATTTCCACTGTCAAAAAGGATTCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5347</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>221105</contig_pos>
        <strand>+</strand>
        <context>AACGGAYCTA[A/T]AATCATTCCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCCTATCTGAACCGGATTGAAACTGCAAAAAATCCGTCTGAACGGACCTA</left_flank>
        <right_flank>AATCATTCCGAAAGGAGTCAAAAATAGCTTCGATAAGATAAATAGGATAG</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCACAACTCAAACAAATCAGATTCTTTATTCCCAACCAAAAAAAATTTCAAGTCAAGTTAGTGCCAATGGGAGGGTTTTTCAATATAATAACCCATTGACTCCGTACCGATGGGGAATGAAAGAATCGAAGGGGTTTATATAGGAGACACTTTCGAAGCGACCGACATTTCATGACAAATTTCACAATTTGTTTGCCAAACGAAAGGAAAAGAGAAACCAGTTATGAAATATTTCAGCATTAAAAAATGTCGGCTGCATGGAGAGTGTTTAGTATATAAACACTCTGAAAAATGAGTTCTTTCGGTGTCCGGTCCGGCGTTGATGGGTTATCAATTTCTGAACCCCTCCCATTGGCACCCATTTGACCGTTGAGTTTTGTAATTTCTTTTTGGAAATAGTGAACAAAAATGAGTTTTTTTCATACATTTTCTGAAAAATCTGGAATTCCCTATCTGAACCGGATTGAAACTGCAAAAAATCCGTCTGAACGGACCTAAAATCATTCCGAAAGGAGTCAAAAATAGCTTCGATAAGATAAATAGGATAGCTTTAATTTTGATTCTACTTTTGCCGGGAAAAAGTTTTTTTCGAATATTCTTTGGAATTTCCAAAGCTTCAATTTCAATTTTCAGCTGTTTACAGTGTCTTTATTTATTTATCCAGATTTCCAAGTTTAAGCCAGTGAGTTACCGTTTCTCTGTCACCCTTTGGCACCAACTTAAATGACGATTGTTTTTCCTTTTTAGAAAAACTCAACTTTGAAAATATTTCTACGGATCGCGCTTTATCAATCTTGTCTACCGTCTCCCCGGTTGTATTTTTTGTCACGATTTCTGGATCTACCGTATCTCAGGTTGCATCCAAAACTGATGGGGTGATTTCCTCTTCAACGAACTCATTTTTCTGGGTGTTTATATACTAAACACTTTCCAGGCAACCGACATTTTACTGCTGAAATATTTCATAACTGGTTTCTCTGTGTCTCTCTTCCTCATTG</canonical>
            <polymorphic>CTTCACAACTCAAACAAATCAGATTCTTTATTCCCAACCAAAAAAAATTTCAAGTCAAGTTAGTGCCAATGGGAGGGTTTTTCAATATAATAACCCATTGACTCCGTACCGATGGGGAATGAAAGAATCGAAGGGGTTTATATAGGAGACACTTTCGAAGCGACCGACATTTCATGACAAATTTCACAATTTGTTTGCCAAACGAAAGGAAAAGAGAAACCAGTTATGAAATATTTCAGCATTAAAAAATGTCGGCTGCATGGAGAGTGTTTAGTATATAAACACTCTGAAAAATGAGTTCTTTCGGTGTCCGGTCCGGCGTTGATGGGTTATCAATTTCTGAACCCCTCCCATTGGCACCCATTTGACCGTTGAGTTTTGTAATTTCTTTTTGGAAATAGTGAACAAAAATGAGTTTTTTTCATACATTTTCTGAAAAATCTGGAATTCCCTATCTGAACCGGATTGAAACTGCAAAAAATCCGTCTGAACGGACCTAWAATCATTCCGAAAGGAGTCAAAAATAGCTTCGATAAGATAAATAGGATAGCTTTAATTTTGATTCTACTTTTGCCGGGAAAAAGTTTTTTTCGAATATTCTTTGGAATTTCCAAAGCTTCAATTTCAATTTTCAGCTGTTTACAGTGTCTTTATTTATTTATCCAGATTTCCAAGTTTAAGCCAGTGAGTTACCGTTTCTCTGTCACCCTTTGGCACCAACTTAAATGACGATTGTTTTTCCTTTTTAGAAAAACTCAACTTTGAAAATATTTCTACGGATCGCGCTTTATCAATCTTGTCTACCGTCTCCCCGGTTGTATTTTTTGTCACGATTTCTGGATCTACCGTATCTCAGGTTGCATCCAAAACTGATGGGGTGATTTCCTCTTCAACGAACTCATTTTTCTGGGTGTTTATATACTAAACACTTTCCAGGCAACCGACATTTTACTGCTGAAATATTTCATAACTGGTTTCTCTGTGTCTCTCTTCCTCATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCTGGAATTCCCTATCTGA</pcr_primer_p1>
		<pcr_primer_p2>TTAAACTTGGAAATCTGGATAAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AATCTGGAATTCCCTATCTGAACCGGATTGAAACTGCAAAAAATCCGTCTGAACGGACCTAAAATCATTCCGAAAGGAGTCAAAAATAGCTTCGATAAGATAAATAGGATAGCTTTAATTTTGATTCTACTTTTGCCGGGAAAAAGTTTTTTTCGAATATTCTTTGGAATTTCCAAAGCTTCAATTTCAATTTTCAGCTGTTTACAGTGTCTTTATTTATTTATCCAGATTTCCAAGTTTAA</canonical_amplicon>
		<polymorphic_amplicon>AATCTGGAATTCCCTATCTGAACCGGATTGAAACTGCAAAAAATCCGTCTGAACGGACCTAWAATCATTCCGAAAGGAGTCAAAAATAGCTTCGATAAGATAAATAGGATAGCTTTAATTTTGATTCTACTTTTGCCGGGAAAAAGTTTTTTTCGAATATTCTTTGGAATTTCCAAAGCTTCAATTTCAATTTTCAGCTGTTTACAGTGTCTTTATTTATTTATCCAGATTTCCAAGTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5348</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>221101</contig_pos>
        <strand>+</strand>
        <context>TCTGAACGGA[C/T]CTAWAATCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTCCCTATCTGAACCGGATTGAAACTGCAAAAAATCCGTCTGAACGGA</left_flank>
        <right_flank>CTAAAATCATTCCGAAAGGAGTCAAAAATAGCTTCGATAAGATAAATAGG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGCTTCACAACTCAAACAAATCAGATTCTTTATTCCCAACCAAAAAAAATTTCAAGTCAAGTTAGTGCCAATGGGAGGGTTTTTCAATATAATAACCCATTGACTCCGTACCGATGGGGAATGAAAGAATCGAAGGGGTTTATATAGGAGACACTTTCGAAGCGACCGACATTTCATGACAAATTTCACAATTTGTTTGCCAAACGAAAGGAAAAGAGAAACCAGTTATGAAATATTTCAGCATTAAAAAATGTCGGCTGCATGGAGAGTGTTTAGTATATAAACACTCTGAAAAATGAGTTCTTTCGGTGTCCGGTCCGGCGTTGATGGGTTATCAATTTCTGAACCCCTCCCATTGGCACCCATTTGACCGTTGAGTTTTGTAATTTCTTTTTGGAAATAGTGAACAAAAATGAGTTTTTTTCATACATTTTCTGAAAAATCTGGAATTCCCTATCTGAACCGGATTGAAACTGCAAAAAATCCGTCTGAACGGACCTAAAATCATTCCGAAAGGAGTCAAAAATAGCTTCGATAAGATAAATAGGATAGCTTTAATTTTGATTCTACTTTTGCCGGGAAAAAGTTTTTTTCGAATATTCTTTGGAATTTCCAAAGCTTCAATTTCAATTTTCAGCTGTTTACAGTGTCTTTATTTATTTATCCAGATTTCCAAGTTTAAGCCAGTGAGTTACCGTTTCTCTGTCACCCTTTGGCACCAACTTAAATGACGATTGTTTTTCCTTTTTAGAAAAACTCAACTTTGAAAATATTTCTACGGATCGCGCTTTATCAATCTTGTCTACCGTCTCCCCGGTTGTATTTTTTGTCACGATTTCTGGATCTACCGTATCTCAGGTTGCATCCAAAACTGATGGGGTGATTTCCTCTTCAACGAACTCATTTTTCTGGGTGTTTATATACTAAACACTTTCCAGGCAACCGACATTTTACTGCTGAAATATTTCATAACTGGTTTCTCTGTGTCTCTCTTCCTC</canonical>
            <polymorphic>TCAGCTTCACAACTCAAACAAATCAGATTCTTTATTCCCAACCAAAAAAAATTTCAAGTCAAGTTAGTGCCAATGGGAGGGTTTTTCAATATAATAACCCATTGACTCCGTACCGATGGGGAATGAAAGAATCGAAGGGGTTTATATAGGAGACACTTTCGAAGCGACCGACATTTCATGACAAATTTCACAATTTGTTTGCCAAACGAAAGGAAAAGAGAAACCAGTTATGAAATATTTCAGCATTAAAAAATGTCGGCTGCATGGAGAGTGTTTAGTATATAAACACTCTGAAAAATGAGTTCTTTCGGTGTCCGGTCCGGCGTTGATGGGTTATCAATTTCTGAACCCCTCCCATTGGCACCCATTTGACCGTTGAGTTTTGTAATTTCTTTTTGGAAATAGTGAACAAAAATGAGTTTTTTTCATACATTTTCTGAAAAATCTGGAATTCCCTATCTGAACCGGATTGAAACTGCAAAAAATCCGTCTGAACGGAYCTAAAATCATTCCGAAAGGAGTCAAAAATAGCTTCGATAAGATAAATAGGATAGCTTTAATTTTGATTCTACTTTTGCCGGGAAAAAGTTTTTTTCGAATATTCTTTGGAATTTCCAAAGCTTCAATTTCAATTTTCAGCTGTTTACAGTGTCTTTATTTATTTATCCAGATTTCCAAGTTTAAGCCAGTGAGTTACCGTTTCTCTGTCACCCTTTGGCACCAACTTAAATGACGATTGTTTTTCCTTTTTAGAAAAACTCAACTTTGAAAATATTTCTACGGATCGCGCTTTATCAATCTTGTCTACCGTCTCCCCGGTTGTATTTTTTGTCACGATTTCTGGATCTACCGTATCTCAGGTTGCATCCAAAACTGATGGGGTGATTTCCTCTTCAACGAACTCATTTTTCTGGGTGTTTATATACTAAACACTTTCCAGGCAACCGACATTTTACTGCTGAAATATTTCATAACTGGTTTCTCTGTGTCTCTCTTCCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>503 317 180</canonical_bands>
                <polymorphic_bands>683 317</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>503 317 180</canonical_bands>
                <polymorphic_bands>683 317</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCTGGAATTCCCTATCTGA</pcr_primer_p1>
		<pcr_primer_p2>TTAAACTTGGAAATCTGGATAAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AATCTGGAATTCCCTATCTGAACCGGATTGAAACTGCAAAAAATCCGTCTGAACGGACCTAAAATCATTCCGAAAGGAGTCAAAAATAGCTTCGATAAGATAAATAGGATAGCTTTAATTTTGATTCTACTTTTGCCGGGAAAAAGTTTTTTTCGAATATTCTTTGGAATTTCCAAAGCTTCAATTTCAATTTTCAGCTGTTTACAGTGTCTTTATTTATTTATCCAGATTTCCAAGTTTAA</canonical_amplicon>
		<polymorphic_amplicon>AATCTGGAATTCCCTATCTGAACCGGATTGAAACTGCAAAAAATCCGTCTGAACGGAYCTAAAATCATTCCGAAAGGAGTCAAAAATAGCTTCGATAAGATAAATAGGATAGCTTTAATTTTGATTCTACTTTTGCCGGGAAAAAGTTTTTTTCGAATATTCTTTGGAATTTCCAAAGCTTCAATTTCAATTTTCAGCTGTTTACAGTGTCTTTATTTATTTATCCAGATTTCCAAGTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5349</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>221065</contig_pos>
        <strand>+</strand>
        <context>CCCTATCTGA[A/G]CCGGATTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGAGTTTTTTTCATACATTTTCTGAAAAATCTGGAATTCCCTATCTGA</left_flank>
        <right_flank>CCGGATTGAAACTGCAAAAAATCCGTCTGAACGGACCTAAAATCATTCCG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATGTAACCAATTTAAAAATGTATATTTTTGACAATCAGCTTCACAACTCAAACAAATCAGATTCTTTATTCCCAACCAAAAAAAATTTCAAGTCAAGTTAGTGCCAATGGGAGGGTTTTTCAATATAATAACCCATTGACTCCGTACCGATGGGGAATGAAAGAATCGAAGGGGTTTATATAGGAGACACTTTCGAAGCGACCGACATTTCATGACAAATTTCACAATTTGTTTGCCAAACGAAAGGAAAAGAGAAACCAGTTATGAAATATTTCAGCATTAAAAAATGTCGGCTGCATGGAGAGTGTTTAGTATATAAACACTCTGAAAAATGAGTTCTTTCGGTGTCCGGTCCGGCGTTGATGGGTTATCAATTTCTGAACCCCTCCCATTGGCACCCATTTGACCGTTGAGTTTTGTAATTTCTTTTTGGAAATAGTGAACAAAAATGAGTTTTTTTCATACATTTTCTGAAAAATCTGGAATTCCCTATCTGAACCGGATTGAAACTGCAAAAAATCCGTCTGAACGGACCTAAAATCATTCCGAAAGGAGTCAAAAATAGCTTCGATAAGATAAATAGGATAGCTTTAATTTTGATTCTACTTTTGCCGGGAAAAAGTTTTTTTCGAATATTCTTTGGAATTTCCAAAGCTTCAATTTCAATTTTCAGCTGTTTACAGTGTCTTTATTTATTTATCCAGATTTCCAAGTTTAAGCCAGTGAGTTACCGTTTCTCTGTCACCCTTTGGCACCAACTTAAATGACGATTGTTTTTCCTTTTTAGAAAAACTCAACTTTGAAAATATTTCTACGGATCGCGCTTTATCAATCTTGTCTACCGTCTCCCCGGTTGTATTTTTTGTCACGATTTCTGGATCTACCGTATCTCAGGTTGCATCCAAAACTGATGGGGTGATTTCCTCTTCAACGAACTCATTTTTCTGGGTGTTTATATACTAAACACTTTCCAGGCAACCGACATTTTACTGCTGAAA</canonical>
            <polymorphic>AGATGTAACCAATTTAAAAATGTATATTTTTGACAATCAGCTTCACAACTCAAACAAATCAGATTCTTTATTCCCAACCAAAAAAAATTTCAAGTCAAGTTAGTGCCAATGGGAGGGTTTTTCAATATAATAACCCATTGACTCCGTACCGATGGGGAATGAAAGAATCGAAGGGGTTTATATAGGAGACACTTTCGAAGCGACCGACATTTCATGACAAATTTCACAATTTGTTTGCCAAACGAAAGGAAAAGAGAAACCAGTTATGAAATATTTCAGCATTAAAAAATGTCGGCTGCATGGAGAGTGTTTAGTATATAAACACTCTGAAAAATGAGTTCTTTCGGTGTCCGGTCCGGCGTTGATGGGTTATCAATTTCTGAACCCCTCCCATTGGCACCCATTTGACCGTTGAGTTTTGTAATTTCTTTTTGGAAATAGTGAACAAAAATGAGTTTTTTTCATACATTTTCTGAAAAATCTGGAATTCCCTATCTGARCCGGATTGAAACTGCAAAAAATCCGTCTGAACGGACCTAAAATCATTCCGAAAGGAGTCAAAAATAGCTTCGATAAGATAAATAGGATAGCTTTAATTTTGATTCTACTTTTGCCGGGAAAAAGTTTTTTTCGAATATTCTTTGGAATTTCCAAAGCTTCAATTTCAATTTTCAGCTGTTTACAGTGTCTTTATTTATTTATCCAGATTTCCAAGTTTAAGCCAGTGAGTTACCGTTTCTCTGTCACCCTTTGGCACCAACTTAAATGACGATTGTTTTTCCTTTTTAGAAAAACTCAACTTTGAAAATATTTCTACGGATCGCGCTTTATCAATCTTGTCTACCGTCTCCCCGGTTGTATTTTTTGTCACGATTTCTGGATCTACCGTATCTCAGGTTGCATCCAAAACTGATGGGGTGATTTCCTCTTCAACGAACTCATTTTTCTGGGTGTTTATATACTAAACACTTTCCAGGCAACCGACATTTTACTGCTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>500 350 150</canonical_bands>
                <polymorphic_bands>650 350</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGAGTTCTTTCGGTGT</pcr_primer_p1>
		<pcr_primer_p2>TCTTATCGAAGCTATTTTTGACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGAGTTCTTTCGGTGTCCGGTCCGGCGTTGATGGGTTATCAATTTCTGAACCCCTCCCATTGGCACCCATTTGACCGTTGAGTTTTGTAATTTCTTTTTGGAAATAGTGAACAAAAATGAGTTTTTTTCATACATTTTCTGAAAAATCTGGAATTCCCTATCTGAACCGGATTGAAACTGCAAAAAATCCGTCTGAACGGACCTAAAATCATTCCGAAAGGAGTCAAAAATAGCTTCGATAAGA</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGAGTTCTTTCGGTGTCCGGTCCGGCGTTGATGGGTTATCAATTTCTGAACCCCTCCCATTGGCACCCATTTGACCGTTGAGTTTTGTAATTTCTTTTTGGAAATAGTGAACAAAAATGAGTTTTTTTCATACATTTTCTGAAAAATCTGGAATTCCCTATCTGARCCGGATTGAAACTGCAAAAAATCCGTCTGAACGGACCTAAAATCATTCCGAAAGGAGTCAAAAATAGCTTCGATAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5351</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>220993</contig_pos>
        <strand>+</strand>
        <context>TTTGTAATTT[C/T]TTTTTGGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTGAACCCCTCCCATTGGCACCCATTTGACCGTTGAGTTTTGTAATTT</left_flank>
        <right_flank>TTTTTGGAAATAGTGAACAAAAATGAGTTTTTTTCATACATTTTCTGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCTTTTTAATTTTTTTAAATAATAATTTCAAATGATTCCTAATAAATTATCATTACTAACTAGTCAATAAAGATGTAACCAATTTAAAAATGTATATTTTTGACAATCAGCTTCACAACTCAAACAAATCAGATTCTTTATTCCCAACCAAAAAAAATTTCAAGTCAAGTTAGTGCCAATGGGAGGGTTTTTCAATATAATAACCCATTGACTCCGTACCGATGGGGAATGAAAGAATCGAAGGGGTTTATATAGGAGACACTTTCGAAGCGACCGACATTTCATGACAAATTTCACAATTTGTTTGCCAAACGAAAGGAAAAGAGAAACCAGTTATGAAATATTTCAGCATTAAAAAATGTCGGCTGCATGGAGAGTGTTTAGTATATAAACACTCTGAAAAATGAGTTCTTTCGGTGTCCGGTCCGGCGTTGATGGGTTATCAATTTCTGAACCCCTCCCATTGGCACCCATTTGACCGTTGAGTTTTGTAATTTCTTTTTGGAAATAGTGAACAAAAATGAGTTTTTTTCATACATTTTCTGAAAAATCTGGAATTCCCTATCTGAACCGGATTGAAACTGCAAAAAATCCGTCTGAACGGACCTAAAATCATTCCGAAAGGAGTCAAAAATAGCTTCGATAAGATAAATAGGATAGCTTTAATTTTGATTCTACTTTTGCCGGGAAAAAGTTTTTTTCGAATATTCTTTGGAATTTCCAAAGCTTCAATTTCAATTTTCAGCTGTTTACAGTGTCTTTATTTATTTATCCAGATTTCCAAGTTTAAGCCAGTGAGTTACCGTTTCTCTGTCACCCTTTGGCACCAACTTAAATGACGATTGTTTTTCCTTTTTAGAAAAACTCAACTTTGAAAATATTTCTACGGATCGCGCTTTATCAATCTTGTCTACCGTCTCCCCGGTTGTATTTTTTGTCACGATTTCTGGATCTACCGTATCTCAGGTTGCATCCAAAACTGATGGGGTGATTTCCTC</canonical>
            <polymorphic>TATCTTTTTAATTTTTTTAAATAATAATTTCAAATGATTCCTAATAAATTATCATTACTAACTAGTCAATAAAGATGTAACCAATTTAAAAATGTATATTTTTGACAATCAGCTTCACAACTCAAACAAATCAGATTCTTTATTCCCAACCAAAAAAAATTTCAAGTCAAGTTAGTGCCAATGGGAGGGTTTTTCAATATAATAACCCATTGACTCCGTACCGATGGGGAATGAAAGAATCGAAGGGGTTTATATAGGAGACACTTTCGAAGCGACCGACATTTCATGACAAATTTCACAATTTGTTTGCCAAACGAAAGGAAAAGAGAAACCAGTTATGAAATATTTCAGCATTAAAAAATGTCGGCTGCATGGAGAGTGTTTAGTATATAAACACTCTGAAAAATGAGTTCTTTCGGTGTCCGGTCCGGCGTTGATGGGTTATCAATTTCTGAACCCCTCCCATTGGCACCCATTTGACCGTTGAGTTTTGTAATTTYTTTTTGGAAATAGTGAACAAAAATGAGTTTTTTTCATACATTTTCTGAAAAATCTGGAATTCCCTATCTGAACCGGATTGAAACTGCAAAAAATCCGTCTGAACGGACCTAAAATCATTCCGAAAGGAGTCAAAAATAGCTTCGATAAGATAAATAGGATAGCTTTAATTTTGATTCTACTTTTGCCGGGAAAAAGTTTTTTTCGAATATTCTTTGGAATTTCCAAAGCTTCAATTTCAATTTTCAGCTGTTTACAGTGTCTTTATTTATTTATCCAGATTTCCAAGTTTAAGCCAGTGAGTTACCGTTTCTCTGTCACCCTTTGGCACCAACTTAAATGACGATTGTTTTTCCTTTTTAGAAAAACTCAACTTTGAAAATATTTCTACGGATCGCGCTTTATCAATCTTGTCTACCGTCTCCCCGGTTGTATTTTTTGTCACGATTTCTGGATCTACCGTATCTCAGGTTGCATCCAAAACTGATGGGGTGATTTCCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAAAAGAGAAACCAGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>GATAGGGAATTCCAGATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGAAAAGAGAAACCAGTTATGAAATATTTCAGCATTAAAAAATGTCGGCTGCATGGAGAGTGTTTAGTATATAAACACTCTGAAAAATGAGTTCTTTCGGTGTCCGGTCCGGCGTTGATGGGTTATCAATTTCTGAACCCCTCCCATTGGCACCCATTTGACCGTTGAGTTTTGTAATTTCTTTTTGGAAATAGTGAACAAAAATGAGTTTTTTTCATACATTTTCTGAAAAATCTGGAATTCCCTATC</canonical_amplicon>
		<polymorphic_amplicon>AGGAAAAGAGAAACCAGTTATGAAATATTTCAGCATTAAAAAATGTCGGCTGCATGGAGAGTGTTTAGTATATAAACACTCTGAAAAATGAGTTCTTTCGGTGTCCGGTCCGGCGTTGATGGGTTATCAATTTCTGAACCCCTCCCATTGGCACCCATTTGACCGTTGAGTTTTGTAATTTYTTTTTGGAAATAGTGAACAAAAATGAGTTTTTTTCATACATTTTCTGAAAAATCTGGAATTCCCTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5352</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>220981</contig_pos>
        <strand>+</strand>
        <context>TGACCGTTGA[G/T]TTTTGTAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGGGTTATCAATTTCTGAACCCCTCCCATTGGCACCCATTTGACCGTTGA</left_flank>
        <right_flank>TTTTGTAATTTCTTTTTGGAAATAGTGAACAAAAATGAGTTTTTTTCATA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCTAATCTTATATCTTTTTAATTTTTTTAAATAATAATTTCAAATGATTCCTAATAAATTATCATTACTAACTAGTCAATAAAGATGTAACCAATTTAAAAATGTATATTTTTGACAATCAGCTTCACAACTCAAACAAATCAGATTCTTTATTCCCAACCAAAAAAAATTTCAAGTCAAGTTAGTGCCAATGGGAGGGTTTTTCAATATAATAACCCATTGACTCCGTACCGATGGGGAATGAAAGAATCGAAGGGGTTTATATAGGAGACACTTTCGAAGCGACCGACATTTCATGACAAATTTCACAATTTGTTTGCCAAACGAAAGGAAAAGAGAAACCAGTTATGAAATATTTCAGCATTAAAAAATGTCGGCTGCATGGAGAGTGTTTAGTATATAAACACTCTGAAAAATGAGTTCTTTCGGTGTCCGGTCCGGCGTTGATGGGTTATCAATTTCTGAACCCCTCCCATTGGCACCCATTTGACCGTTGAGTTTTGTAATTTCTTTTTGGAAATAGTGAACAAAAATGAGTTTTTTTCATACATTTTCTGAAAAATCTGGAATTCCCTATCTGAACCGGATTGAAACTGCAAAAAATCCGTCTGAACGGACCTAAAATCATTCCGAAAGGAGTCAAAAATAGCTTCGATAAGATAAATAGGATAGCTTTAATTTTGATTCTACTTTTGCCGGGAAAAAGTTTTTTTCGAATATTCTTTGGAATTTCCAAAGCTTCAATTTCAATTTTCAGCTGTTTACAGTGTCTTTATTTATTTATCCAGATTTCCAAGTTTAAGCCAGTGAGTTACCGTTTCTCTGTCACCCTTTGGCACCAACTTAAATGACGATTGTTTTTCCTTTTTAGAAAAACTCAACTTTGAAAATATTTCTACGGATCGCGCTTTATCAATCTTGTCTACCGTCTCCCCGGTTGTATTTTTTGTCACGATTTCTGGATCTACCGTATCTCAGGTTGCATCCAAAACTGATGG</canonical>
            <polymorphic>AGTCTAATCTTATATCTTTTTAATTTTTTTAAATAATAATTTCAAATGATTCCTAATAAATTATCATTACTAACTAGTCAATAAAGATGTAACCAATTTAAAAATGTATATTTTTGACAATCAGCTTCACAACTCAAACAAATCAGATTCTTTATTCCCAACCAAAAAAAATTTCAAGTCAAGTTAGTGCCAATGGGAGGGTTTTTCAATATAATAACCCATTGACTCCGTACCGATGGGGAATGAAAGAATCGAAGGGGTTTATATAGGAGACACTTTCGAAGCGACCGACATTTCATGACAAATTTCACAATTTGTTTGCCAAACGAAAGGAAAAGAGAAACCAGTTATGAAATATTTCAGCATTAAAAAATGTCGGCTGCATGGAGAGTGTTTAGTATATAAACACTCTGAAAAATGAGTTCTTTCGGTGTCCGGTCCGGCGTTGATGGGTTATCAATTTCTGAACCCCTCCCATTGGCACCCATTTGACCGTTGAKTTTTGTAATTTCTTTTTGGAAATAGTGAACAAAAATGAGTTTTTTTCATACATTTTCTGAAAAATCTGGAATTCCCTATCTGAACCGGATTGAAACTGCAAAAAATCCGTCTGAACGGACCTAAAATCATTCCGAAAGGAGTCAAAAATAGCTTCGATAAGATAAATAGGATAGCTTTAATTTTGATTCTACTTTTGCCGGGAAAAAGTTTTTTTCGAATATTCTTTGGAATTTCCAAAGCTTCAATTTCAATTTTCAGCTGTTTACAGTGTCTTTATTTATTTATCCAGATTTCCAAGTTTAAGCCAGTGAGTTACCGTTTCTCTGTCACCCTTTGGCACCAACTTAAATGACGATTGTTTTTCCTTTTTAGAAAAACTCAACTTTGAAAATATTTCTACGGATCGCGCTTTATCAATCTTGTCTACCGTCTCCCCGGTTGTATTTTTTGTCACGATTTCTGGATCTACCGTATCTCAGGTTGCATCCAAAACTGATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAAAAGAGAAACCAGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>GATAGGGAATTCCAGATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGAAAAGAGAAACCAGTTATGAAATATTTCAGCATTAAAAAATGTCGGCTGCATGGAGAGTGTTTAGTATATAAACACTCTGAAAAATGAGTTCTTTCGGTGTCCGGTCCGGCGTTGATGGGTTATCAATTTCTGAACCCCTCCCATTGGCACCCATTTGACCGTTGAGTTTTGTAATTTCTTTTTGGAAATAGTGAACAAAAATGAGTTTTTTTCATACATTTTCTGAAAAATCTGGAATTCCCTATC</canonical_amplicon>
		<polymorphic_amplicon>AGGAAAAGAGAAACCAGTTATGAAATATTTCAGCATTAAAAAATGTCGGCTGCATGGAGAGTGTTTAGTATATAAACACTCTGAAAAATGAGTTCTTTCGGTGTCCGGTCCGGCGTTGATGGGTTATCAATTTCTGAACCCCTCCCATTGGCACCCATTTGACCGTTGAKTTTTGTAATTTCTTTTTGGAAATAGTGAACAAAAATGAGTTTTTTTCATACATTTTCTGAAAAATCTGGAATTCCCTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5353</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>220967</contig_pos>
        <strand>+</strand>
        <context>CATTGGCACC[A/C]ATTTGACCGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGGTCCGGCGTTGATGGGTTATCAATTTCTGAACCCCTCCCATTGGCACC</left_flank>
        <right_flank>ATTTGACCGTTGAGTTTTGTAATTTCTTTTTGGAAATAGTGAACAAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCTTCAATCAAGAGTCTAATCTTATATCTTTTTAATTTTTTTAAATAATAATTTCAAATGATTCCTAATAAATTATCATTACTAACTAGTCAATAAAGATGTAACCAATTTAAAAATGTATATTTTTGACAATCAGCTTCACAACTCAAACAAATCAGATTCTTTATTCCCAACCAAAAAAAATTTCAAGTCAAGTTAGTGCCAATGGGAGGGTTTTTCAATATAATAACCCATTGACTCCGTACCGATGGGGAATGAAAGAATCGAAGGGGTTTATATAGGAGACACTTTCGAAGCGACCGACATTTCATGACAAATTTCACAATTTGTTTGCCAAACGAAAGGAAAAGAGAAACCAGTTATGAAATATTTCAGCATTAAAAAATGTCGGCTGCATGGAGAGTGTTTAGTATATAAACACTCTGAAAAATGAGTTCTTTCGGTGTCCGGTCCGGCGTTGATGGGTTATCAATTTCTGAACCCCTCCCATTGGCACCCATTTGACCGTTGAGTTTTGTAATTTCTTTTTGGAAATAGTGAACAAAAATGAGTTTTTTTCATACATTTTCTGAAAAATCTGGAATTCCCTATCTGAACCGGATTGAAACTGCAAAAAATCCGTCTGAACGGACCTAAAATCATTCCGAAAGGAGTCAAAAATAGCTTCGATAAGATAAATAGGATAGCTTTAATTTTGATTCTACTTTTGCCGGGAAAAAGTTTTTTTCGAATATTCTTTGGAATTTCCAAAGCTTCAATTTCAATTTTCAGCTGTTTACAGTGTCTTTATTTATTTATCCAGATTTCCAAGTTTAAGCCAGTGAGTTACCGTTTCTCTGTCACCCTTTGGCACCAACTTAAATGACGATTGTTTTTCCTTTTTAGAAAAACTCAACTTTGAAAATATTTCTACGGATCGCGCTTTATCAATCTTGTCTACCGTCTCCCCGGTTGTATTTTTTGTCACGATTTCTGGATCTACCGTATCTCAGGTTGCA</canonical>
            <polymorphic>ACTCTTCAATCAAGAGTCTAATCTTATATCTTTTTAATTTTTTTAAATAATAATTTCAAATGATTCCTAATAAATTATCATTACTAACTAGTCAATAAAGATGTAACCAATTTAAAAATGTATATTTTTGACAATCAGCTTCACAACTCAAACAAATCAGATTCTTTATTCCCAACCAAAAAAAATTTCAAGTCAAGTTAGTGCCAATGGGAGGGTTTTTCAATATAATAACCCATTGACTCCGTACCGATGGGGAATGAAAGAATCGAAGGGGTTTATATAGGAGACACTTTCGAAGCGACCGACATTTCATGACAAATTTCACAATTTGTTTGCCAAACGAAAGGAAAAGAGAAACCAGTTATGAAATATTTCAGCATTAAAAAATGTCGGCTGCATGGAGAGTGTTTAGTATATAAACACTCTGAAAAATGAGTTCTTTCGGTGTCCGGTCCGGCGTTGATGGGTTATCAATTTCTGAACCCCTCCCATTGGCACCMATTTGACCGTTGAGTTTTGTAATTTCTTTTTGGAAATAGTGAACAAAAATGAGTTTTTTTCATACATTTTCTGAAAAATCTGGAATTCCCTATCTGAACCGGATTGAAACTGCAAAAAATCCGTCTGAACGGACCTAAAATCATTCCGAAAGGAGTCAAAAATAGCTTCGATAAGATAAATAGGATAGCTTTAATTTTGATTCTACTTTTGCCGGGAAAAAGTTTTTTTCGAATATTCTTTGGAATTTCCAAAGCTTCAATTTCAATTTTCAGCTGTTTACAGTGTCTTTATTTATTTATCCAGATTTCCAAGTTTAAGCCAGTGAGTTACCGTTTCTCTGTCACCCTTTGGCACCAACTTAAATGACGATTGTTTTTCCTTTTTAGAAAAACTCAACTTTGAAAATATTTCTACGGATCGCGCTTTATCAATCTTGTCTACCGTCTCCCCGGTTGTATTTTTTGTCACGATTTCTGGATCTACCGTATCTCAGGTTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAAAAGAGAAACCAGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>GATAGGGAATTCCAGATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGAAAAGAGAAACCAGTTATGAAATATTTCAGCATTAAAAAATGTCGGCTGCATGGAGAGTGTTTAGTATATAAACACTCTGAAAAATGAGTTCTTTCGGTGTCCGGTCCGGCGTTGATGGGTTATCAATTTCTGAACCCCTCCCATTGGCACCCATTTGACCGTTGAGTTTTGTAATTTCTTTTTGGAAATAGTGAACAAAAATGAGTTTTTTTCATACATTTTCTGAAAAATCTGGAATTCCCTATC</canonical_amplicon>
		<polymorphic_amplicon>AGGAAAAGAGAAACCAGTTATGAAATATTTCAGCATTAAAAAATGTCGGCTGCATGGAGAGTGTTTAGTATATAAACACTCTGAAAAATGAGTTCTTTCGGTGTCCGGTCCGGCGTTGATGGGTTATCAATTTCTGAACCCCTCCCATTGGCACCMATTTGACCGTTGAGTTTTGTAATTTCTTTTTGGAAATAGTGAACAAAAATGAGTTTTTTTCATACATTTTCTGAAAAATCTGGAATTCCCTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5354</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>253564</contig_pos>
        <strand>+</strand>
        <context>TCACAAAAAT[G/T]GTGTTGATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGCTCTAAAATAGTTGAAATTCTCAAAAAATCCATGAAGATCACAAAAAT</left_flank>
        <right_flank>GTGTTGATAAATAGAATCGACCGAAAAATACATCTTATCGAGAAACCAGA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTGGATTTCTCTCACAAATTTTCGACGATTTTTACCGTTTTTTTCAATGGTTTTCATCATTAAAAAAAAACGGTGAAAATTGTCAGAAAATTGAGGAAATGGTGAAAAGAAATGTAAAATGTTCTCAAAGTACGGTAGTTTTCGCACTTGCGCATTTAAACAAAATTTAACGAAATATCCACACTCAGCCTTTTTTTCTAGACAGCGATAATAGAAACTAGAGGTTACAGTATTCCTATTCCAGCGTCTAAAGGACCAACGTCTAAGCGTCTAATTCCCAGATTCCAAGTAATTTTAAGCATCTAATTCCAGCGTCAAAGCGAGAAAATATTTGGAAAAACCGGGAAAAACTGTAAAGAATGCAAACGCGCTCTATTTTTTCGAGTTCTCAATTGAGAACTCGAAAAAATTTGATTTCCCACAGAATTCACAAAACTTAAAGAAAAGGGCTCTAAAATAGTTGAAATTCTCAAAAAATCCATGAAGATCACAAAAATGGTGTTGATAAATAGAATCGACCGAAAAATACATCTTATCGAGAAACCAGAACCAAAAATAGGTCAAATCGCTCTCAAAAAAAGAAAAGAAGAATATTTCAACGCCTTTCCATCTTCTTCTTCCTCCTTTCTCATTCTTATTTTATCGGGCGACTATGATCGATTCGAATGCAATTCAATTCAACTCAAAAAAACGTTGATGGGCGTGAAGAAGAATGAATATACACATAGATTGCGAATGAGAAGAGAAGAAGAAGAAGGGAAGGAGAGAAGAAATACAACTGATAACGACATCGTCGGTTGTCGTCACCCAACATCTCGATTTGAATGTGAGAGAGAGTGAAGAGACGCAGACACACTCCCTACAGTAGGCATCTCTCACACAAGGAGAAGCAATCGAGCGAAGAAGAAGAAGAAGGCGGACACACAACTTGGCATTGAGCCAGCCCTCGAATGGAAAAAGAGAGAAATATGGAAGAAGCACGAAGAATTCTACGAGCG</canonical>
            <polymorphic>ATTTGGATTTCTCTCACAAATTTTCGACGATTTTTACCGTTTTTTTCAATGGTTTTCATCATTAAAAAAAAACGGTGAAAATTGTCAGAAAATTGAGGAAATGGTGAAAAGAAATGTAAAATGTTCTCAAAGTACGGTAGTTTTCGCACTTGCGCATTTAAACAAAATTTAACGAAATATCCACACTCAGCCTTTTTTTCTAGACAGCGATAATAGAAACTAGAGGTTACAGTATTCCTATTCCAGCGTCTAAAGGACCAACGTCTAAGCGTCTAATTCCCAGATTCCAAGTAATTTTAAGCATCTAATTCCAGCGTCAAAGCGAGAAAATATTTGGAAAAACCGGGAAAAACTGTAAAGAATGCAAACGCGCTCTATTTTTTCGAGTTCTCAATTGAGAACTCGAAAAAATTTGATTTCCCACAGAATTCACAAAACTTAAAGAAAAGGGCTCTAAAATAGTTGAAATTCTCAAAAAATCCATGAAGATCACAAAAATKGTGTTGATAAATAGAATCGACCGAAAAATACATCTTATCGAGAAACCAGAACCAAAAATAGGTCAAATCGCTCTCAAAAAAAGAAAAGAAGAATATTTCAACGCCTTTCCATCTTCTTCTTCCTCCTTTCTCATTCTTATTTTATCGGGCGACTATGATCGATTCGAATGCAATTCAATTCAACTCAAAAAAACGTTGATGGGCGTGAAGAAGAATGAATATACACATAGATTGCGAATGAGAAGAGAAGAAGAAGAAGGGAAGGAGAGAAGAAATACAACTGATAACGACATCGTCGGTTGTCGTCACCCAACATCTCGATTTGAATGTGAGAGAGAGTGAAGAGACGCAGACACACTCCCTACAGTAGGCATCTCTCACACAAGGAGAAGCAATCGAGCGAAGAAGAAGAAGAAGGCGGACACACAACTTGGCATTGAGCCAGCCCTCGAATGGAAAAAGAGAGAAATATGGAAGAAGCACGAAGAATTCTACGAGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCGAGAAAATATTTGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTTGACCTATTTTTGGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGCGAGAAAATATTTGGAAAAACCGGGAAAAACTGTAAAGAATGCAAACGCGCTCTATTTTTTCGAGTTCTCAATTGAGAACTCGAAAAAATTTGATTTCCCACAGAATTCACAAAACTTAAAGAAAAGGGCTCTAAAATAGTTGAAATTCTCAAAAAATCCATGAAGATCACAAAAATGGTGTTGATAAATAGAATCGACCGAAAAATACATCTTATCGAGAAACCAGAACCAAAAATAGGTCAAAT</canonical_amplicon>
		<polymorphic_amplicon>AGCGAGAAAATATTTGGAAAAACCGGGAAAAACTGTAAAGAATGCAAACGCGCTCTATTTTTTCGAGTTCTCAATTGAGAACTCGAAAAAATTTGATTTCCCACAGAATTCACAAAACTTAAAGAAAAGGGCTCTAAAATAGTTGAAATTCTCAAAAAATCCATGAAGATCACAAAAATKGTGTTGATAAATAGAATCGACCGAAAAATACATCTTATCGAGAAACCAGAACCAAAAATAGGTCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5355</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>253687</contig_pos>
        <strand>+</strand>
        <context>CTTCTTCTTC[A/C]TCMTTTCTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTCAAAAAAAGAAAAGAAGAATATTTCAACGCCTTTCCATCTTCTTCTTC</left_flank>
        <right_flank>TCCTTTCTCATTCTTATTTTATCGGGCGACTATGATCGATTCGAATGCAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTCAAAGTACGGTAGTTTTCGCACTTGCGCATTTAAACAAAATTTAACGAAATATCCACACTCAGCCTTTTTTTCTAGACAGCGATAATAGAAACTAGAGGTTACAGTATTCCTATTCCAGCGTCTAAAGGACCAACGTCTAAGCGTCTAATTCCCAGATTCCAAGTAATTTTAAGCATCTAATTCCAGCGTCAAAGCGAGAAAATATTTGGAAAAACCGGGAAAAACTGTAAAGAATGCAAACGCGCTCTATTTTTTCGAGTTCTCAATTGAGAACTCGAAAAAATTTGATTTCCCACAGAATTCACAAAACTTAAAGAAAAGGGCTCTAAAATAGTTGAAATTCTCAAAAAATCCATGAAGATCACAAAAATGGTGTTGATAAATAGAATCGACCGAAAAATACATCTTATCGAGAAACCAGAACCAAAAATAGGTCAAATCGCTCTCAAAAAAAGAAAAGAAGAATATTTCAACGCCTTTCCATCTTCTTCTTCCTCCTTTCTCATTCTTATTTTATCGGGCGACTATGATCGATTCGAATGCAATTCAATTCAACTCAAAAAAACGTTGATGGGCGTGAAGAAGAATGAATATACACATAGATTGCGAATGAGAAGAGAAGAAGAAGAAGGGAAGGAGAGAAGAAATACAACTGATAACGACATCGTCGGTTGTCGTCACCCAACATCTCGATTTGAATGTGAGAGAGAGTGAAGAGACGCAGACACACTCCCTACAGTAGGCATCTCTCACACAAGGAGAAGCAATCGAGCGAAGAAGAAGAAGAAGGCGGACACACAACTTGGCATTGAGCCAGCCCTCGAATGGAAAAAGAGAGAAATATGGAAGAAGCACGAAGAATTCTACGAGCGGCTCTTCTATGTCACATGCATGCATACTCTCGTTTCTGCTTCTTCTTTCACAAACACACACAAATAGCAACAACGCCCCCTAGAGCAGTAGCTCTTTTTACTCTTACTATCTGCGTTTTGTGG</canonical>
            <polymorphic>TTCTCAAAGTACGGTAGTTTTCGCACTTGCGCATTTAAACAAAATTTAACGAAATATCCACACTCAGCCTTTTTTTCTAGACAGCGATAATAGAAACTAGAGGTTACAGTATTCCTATTCCAGCGTCTAAAGGACCAACGTCTAAGCGTCTAATTCCCAGATTCCAAGTAATTTTAAGCATCTAATTCCAGCGTCAAAGCGAGAAAATATTTGGAAAAACCGGGAAAAACTGTAAAGAATGCAAACGCGCTCTATTTTTTCGAGTTCTCAATTGAGAACTCGAAAAAATTTGATTTCCCACAGAATTCACAAAACTTAAAGAAAAGGGCTCTAAAATAGTTGAAATTCTCAAAAAATCCATGAAGATCACAAAAATGGTGTTGATAAATAGAATCGACCGAAAAATACATCTTATCGAGAAACCAGAACCAAAAATAGGTCAAATCGCTCTCAAAAAAAGAAAAGAAGAATATTTCAACGCCTTTCCATCTTCTTCTTCMTCCTTTCTCATTCTTATTTTATCGGGCGACTATGATCGATTCGAATGCAATTCAATTCAACTCAAAAAAACGTTGATGGGCGTGAAGAAGAATGAATATACACATAGATTGCGAATGAGAAGAGAAGAAGAAGAAGGGAAGGAGAGAAGAAATACAACTGATAACGACATCGTCGGTTGTCGTCACCCAACATCTCGATTTGAATGTGAGAGAGAGTGAAGAGACGCAGACACACTCCCTACAGTAGGCATCTCTCACACAAGGAGAAGCAATCGAGCGAAGAAGAAGAAGAAGGCGGACACACAACTTGGCATTGAGCCAGCCCTCGAATGGAAAAAGAGAGAAATATGGAAGAAGCACGAAGAATTCTACGAGCGGCTCTTCTATGTCACATGCATGCATACTCTCGTTTCTGCTTCTTCTTTCACAAACACACACAAATAGCAACAACGCCCCCTAGAGCAGTAGCTCTTTTTACTCTTACTATCTGCGTTTTGTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAACCAAAAATAGGTCAAAT</pcr_primer_p1>
		<pcr_primer_p2>ACGATGTCGTTATCAGTTGTATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGAACCAAAAATAGGTCAAATCGCTCTCAAAAAAAGAAAAGAAGAATATTTCAACGCCTTTCCATCTTCTTCTTCCTCCTTTCTCATTCTTATTTTATCGGGCGACTATGATCGATTCGAATGCAATTCAATTCAACTCAAAAAAACGTTGATGGGCGTGAAGAAGAATGAATATACACATAGATTGCGAATGAGAAGAGAAGAAGAAGAAGGGAAGGAGAGAAGAAATACAACTGATAACGACATCGT</canonical_amplicon>
		<polymorphic_amplicon>CAGAACCAAAAATAGGTCAAATCGCTCTCAAAAAAAGAAAAGAAGAATATTTCAACGCCTTTCCATCTTCTTCTTCMTCCTTTCTCATTCTTATTTTATCGGGCGACTATGATCGATTCGAATGCAATTCAATTCAACTCAAAAAAACGTTGATGGGCGTGAAGAAGAATGAATATACACATAGATTGCGAATGAGAAGAGAAGAAGAAGAAGGGAAGGAGAGAAGAAATACAACTGATAACGACATCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5356</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>253690</contig_pos>
        <strand>+</strand>
        <context>CTTCTTCMTC[A/C]TTTCTCATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAAAAAGAAAAGAAGAATATTTCAACGCCTTTCCATCTTCTTCTTCCTC</left_flank>
        <right_flank>TTTCTCATTCTTATTTTATCGGGCGACTATGATCGATTCGAATGCAATTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAGTACGGTAGTTTTCGCACTTGCGCATTTAAACAAAATTTAACGAAATATCCACACTCAGCCTTTTTTTCTAGACAGCGATAATAGAAACTAGAGGTTACAGTATTCCTATTCCAGCGTCTAAAGGACCAACGTCTAAGCGTCTAATTCCCAGATTCCAAGTAATTTTAAGCATCTAATTCCAGCGTCAAAGCGAGAAAATATTTGGAAAAACCGGGAAAAACTGTAAAGAATGCAAACGCGCTCTATTTTTTCGAGTTCTCAATTGAGAACTCGAAAAAATTTGATTTCCCACAGAATTCACAAAACTTAAAGAAAAGGGCTCTAAAATAGTTGAAATTCTCAAAAAATCCATGAAGATCACAAAAATGGTGTTGATAAATAGAATCGACCGAAAAATACATCTTATCGAGAAACCAGAACCAAAAATAGGTCAAATCGCTCTCAAAAAAAGAAAAGAAGAATATTTCAACGCCTTTCCATCTTCTTCTTCCTCCTTTCTCATTCTTATTTTATCGGGCGACTATGATCGATTCGAATGCAATTCAATTCAACTCAAAAAAACGTTGATGGGCGTGAAGAAGAATGAATATACACATAGATTGCGAATGAGAAGAGAAGAAGAAGAAGGGAAGGAGAGAAGAAATACAACTGATAACGACATCGTCGGTTGTCGTCACCCAACATCTCGATTTGAATGTGAGAGAGAGTGAAGAGACGCAGACACACTCCCTACAGTAGGCATCTCTCACACAAGGAGAAGCAATCGAGCGAAGAAGAAGAAGAAGGCGGACACACAACTTGGCATTGAGCCAGCCCTCGAATGGAAAAAGAGAGAAATATGGAAGAAGCACGAAGAATTCTACGAGCGGCTCTTCTATGTCACATGCATGCATACTCTCGTTTCTGCTTCTTCTTTCACAAACACACACAAATAGCAACAACGCCCCCTAGAGCAGTAGCTCTTTTTACTCTTACTATCTGCGTTTTGTGGTCT</canonical>
            <polymorphic>TCAAAGTACGGTAGTTTTCGCACTTGCGCATTTAAACAAAATTTAACGAAATATCCACACTCAGCCTTTTTTTCTAGACAGCGATAATAGAAACTAGAGGTTACAGTATTCCTATTCCAGCGTCTAAAGGACCAACGTCTAAGCGTCTAATTCCCAGATTCCAAGTAATTTTAAGCATCTAATTCCAGCGTCAAAGCGAGAAAATATTTGGAAAAACCGGGAAAAACTGTAAAGAATGCAAACGCGCTCTATTTTTTCGAGTTCTCAATTGAGAACTCGAAAAAATTTGATTTCCCACAGAATTCACAAAACTTAAAGAAAAGGGCTCTAAAATAGTTGAAATTCTCAAAAAATCCATGAAGATCACAAAAATGGTGTTGATAAATAGAATCGACCGAAAAATACATCTTATCGAGAAACCAGAACCAAAAATAGGTCAAATCGCTCTCAAAAAAAGAAAAGAAGAATATTTCAACGCCTTTCCATCTTCTTCTTCCTCMTTTCTCATTCTTATTTTATCGGGCGACTATGATCGATTCGAATGCAATTCAATTCAACTCAAAAAAACGTTGATGGGCGTGAAGAAGAATGAATATACACATAGATTGCGAATGAGAAGAGAAGAAGAAGAAGGGAAGGAGAGAAGAAATACAACTGATAACGACATCGTCGGTTGTCGTCACCCAACATCTCGATTTGAATGTGAGAGAGAGTGAAGAGACGCAGACACACTCCCTACAGTAGGCATCTCTCACACAAGGAGAAGCAATCGAGCGAAGAAGAAGAAGAAGGCGGACACACAACTTGGCATTGAGCCAGCCCTCGAATGGAAAAAGAGAGAAATATGGAAGAAGCACGAAGAATTCTACGAGCGGCTCTTCTATGTCACATGCATGCATACTCTCGTTTCTGCTTCTTCTTTCACAAACACACACAAATAGCAACAACGCCCCCTAGAGCAGTAGCTCTTTTTACTCTTACTATCTGCGTTTTGTGGTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAACCAAAAATAGGTCAAAT</pcr_primer_p1>
		<pcr_primer_p2>ACGATGTCGTTATCAGTTGTATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGAACCAAAAATAGGTCAAATCGCTCTCAAAAAAAGAAAAGAAGAATATTTCAACGCCTTTCCATCTTCTTCTTCCTCCTTTCTCATTCTTATTTTATCGGGCGACTATGATCGATTCGAATGCAATTCAATTCAACTCAAAAAAACGTTGATGGGCGTGAAGAAGAATGAATATACACATAGATTGCGAATGAGAAGAGAAGAAGAAGAAGGGAAGGAGAGAAGAAATACAACTGATAACGACATCGT</canonical_amplicon>
		<polymorphic_amplicon>CAGAACCAAAAATAGGTCAAATCGCTCTCAAAAAAAGAAAAGAAGAATATTTCAACGCCTTTCCATCTTCTTCTTCCTCMTTTCTCATTCTTATTTTATCGGGCGACTATGATCGATTCGAATGCAATTCAATTCAACTCAAAAAAACGTTGATGGGCGTGAAGAAGAATGAATATACACATAGATTGCGAATGAGAAGAGAAGAAGAAGAAGGGAAGGAGAGAAGAAATACAACTGATAACGACATCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5357</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>253720</contig_pos>
        <strand>+</strand>
        <context>CGGGCGACTA[C/T]GATCGATTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCCATCTTCTTCTTCCTCCTTTCTCATTCTTATTTTATCGGGCGACTA</left_flank>
        <right_flank>GATCGATTCGAATGCAATTCAATTCAACTCAAAAAAACGTTGATGGGCGT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAAACAAAATTTAACGAAATATCCACACTCAGCCTTTTTTTCTAGACAGCGATAATAGAAACTAGAGGTTACAGTATTCCTATTCCAGCGTCTAAAGGACCAACGTCTAAGCGTCTAATTCCCAGATTCCAAGTAATTTTAAGCATCTAATTCCAGCGTCAAAGCGAGAAAATATTTGGAAAAACCGGGAAAAACTGTAAAGAATGCAAACGCGCTCTATTTTTTCGAGTTCTCAATTGAGAACTCGAAAAAATTTGATTTCCCACAGAATTCACAAAACTTAAAGAAAAGGGCTCTAAAATAGTTGAAATTCTCAAAAAATCCATGAAGATCACAAAAATGGTGTTGATAAATAGAATCGACCGAAAAATACATCTTATCGAGAAACCAGAACCAAAAATAGGTCAAATCGCTCTCAAAAAAAGAAAAGAAGAATATTTCAACGCCTTTCCATCTTCTTCTTCCTCCTTTCTCATTCTTATTTTATCGGGCGACTATGATCGATTCGAATGCAATTCAATTCAACTCAAAAAAACGTTGATGGGCGTGAAGAAGAATGAATATACACATAGATTGCGAATGAGAAGAGAAGAAGAAGAAGGGAAGGAGAGAAGAAATACAACTGATAACGACATCGTCGGTTGTCGTCACCCAACATCTCGATTTGAATGTGAGAGAGAGTGAAGAGACGCAGACACACTCCCTACAGTAGGCATCTCTCACACAAGGAGAAGCAATCGAGCGAAGAAGAAGAAGAAGGCGGACACACAACTTGGCATTGAGCCAGCCCTCGAATGGAAAAAGAGAGAAATATGGAAGAAGCACGAAGAATTCTACGAGCGGCTCTTCTATGTCACATGCATGCATACTCTCGTTTCTGCTTCTTCTTTCACAAACACACACAAATAGCAACAACGCCCCCTAGAGCAGTAGCTCTTTTTACTCTTACTATCTGCGTTTTGTGGTCTCTCCTCTTCTATTTTTTTTCTCTTTCACTC</canonical>
            <polymorphic>TTTAAACAAAATTTAACGAAATATCCACACTCAGCCTTTTTTTCTAGACAGCGATAATAGAAACTAGAGGTTACAGTATTCCTATTCCAGCGTCTAAAGGACCAACGTCTAAGCGTCTAATTCCCAGATTCCAAGTAATTTTAAGCATCTAATTCCAGCGTCAAAGCGAGAAAATATTTGGAAAAACCGGGAAAAACTGTAAAGAATGCAAACGCGCTCTATTTTTTCGAGTTCTCAATTGAGAACTCGAAAAAATTTGATTTCCCACAGAATTCACAAAACTTAAAGAAAAGGGCTCTAAAATAGTTGAAATTCTCAAAAAATCCATGAAGATCACAAAAATGGTGTTGATAAATAGAATCGACCGAAAAATACATCTTATCGAGAAACCAGAACCAAAAATAGGTCAAATCGCTCTCAAAAAAAGAAAAGAAGAATATTTCAACGCCTTTCCATCTTCTTCTTCCTCCTTTCTCATTCTTATTTTATCGGGCGACTAYGATCGATTCGAATGCAATTCAATTCAACTCAAAAAAACGTTGATGGGCGTGAAGAAGAATGAATATACACATAGATTGCGAATGAGAAGAGAAGAAGAAGAAGGGAAGGAGAGAAGAAATACAACTGATAACGACATCGTCGGTTGTCGTCACCCAACATCTCGATTTGAATGTGAGAGAGAGTGAAGAGACGCAGACACACTCCCTACAGTAGGCATCTCTCACACAAGGAGAAGCAATCGAGCGAAGAAGAAGAAGAAGGCGGACACACAACTTGGCATTGAGCCAGCCCTCGAATGGAAAAAGAGAGAAATATGGAAGAAGCACGAAGAATTCTACGAGCGGCTCTTCTATGTCACATGCATGCATACTCTCGTTTCTGCTTCTTCTTTCACAAACACACACAAATAGCAACAACGCCCCCTAGAGCAGTAGCTCTTTTTACTCTTACTATCTGCGTTTTGTGGTCTCTCCTCTTCTATTTTTTTTCTCTTTCACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAACCAAAAATAGGTCAAAT</pcr_primer_p1>
		<pcr_primer_p2>ACGATGTCGTTATCAGTTGTATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGAACCAAAAATAGGTCAAATCGCTCTCAAAAAAAGAAAAGAAGAATATTTCAACGCCTTTCCATCTTCTTCTTCCTCCTTTCTCATTCTTATTTTATCGGGCGACTATGATCGATTCGAATGCAATTCAATTCAACTCAAAAAAACGTTGATGGGCGTGAAGAAGAATGAATATACACATAGATTGCGAATGAGAAGAGAAGAAGAAGAAGGGAAGGAGAGAAGAAATACAACTGATAACGACATCGT</canonical_amplicon>
		<polymorphic_amplicon>CAGAACCAAAAATAGGTCAAATCGCTCTCAAAAAAAGAAAAGAAGAATATTTCAACGCCTTTCCATCTTCTTCTTCCTCCTTTCTCATTCTTATTTTATCGGGCGACTAYGATCGATTCGAATGCAATTCAATTCAACTCAAAAAAACGTTGATGGGCGTGAAGAAGAATGAATATACACATAGATTGCGAATGAGAAGAGAAGAAGAAGAAGGGAAGGAGAGAAGAAATACAACTGATAACGACATCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5358</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>356201</contig_pos>
        <strand>+</strand>
        <context>GATGTTATTC[A/G]GAGTCTTTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTTTTCACCAAATCTTGCCGAATTTCGCAATTTGTCGCGATGTTATTC</left_flank>
        <right_flank>GAGTCTTTATAATATCCAGATATATCCAAAGATTTCTGAAGTTATTGAAT</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGAGCCACTGAAATTGAATATTTTCAAATTAGAAAATCTTCTAGAACTTGACAAAGCGTTTTTAAATCTAGAGACACAGACAACGAGACATTCTAGTTGTTTGTGTCTCTTCAAAATTTCAAAGCGCTGTATCTCATTGTCAGCTCCCAGACAGCCTACTAAGCTGGTTTTTGGACATGATAAGAGCAAACGTTGAGTAATTTCTGAAAACACTTACAGCTAGCGGGAAATGAAGATGAATTTCAATCCAGCAAGGGATTGAAGACAAAAAACCAATTTGTTTTCTGTTAGTCGTAGTGTTCCGTGTATTTATCTCTTTTTCCCTTTCGTTCTCTCTCATACTGCGTCTTGTTTTCTCTCGCAATTCTCTGTCTGTTTCGTGTATCTTTGATTCTTCTGAACTTTTTCCATTTACTTTTGAGTCATTCGTTGTAAACAAGGTCATGATATTTTTCACCAAATCTTGCCGAATTTCGCAATTTGTCGCGATGTTATTCAGAGTCTTTATAATATCCAGATATATCCAAAGATTTCTGAAGTTATTGAATTTTTAGTTTTTATGTTCTCTCCTAGTTTCTAAATCAGCCACGAAAATTGGAGCTGTAAAAGAGAACATTTGGTGGCAGCAACCACCACTGAACTAATTAGCAAATATTGTTTAGTTTTTTTTTCGATTTTCGTCCGTTTTCCGGCAATTTTTTAGATCCAGAAAAATTTATTTATTTTCCTTTTTTGGAGGTTTTCAACACAAAAATTGTCGAAAAGCAATTTCGATCGAGAAGAAATGACCGGAAGATTTAGGTTACGGTGGTTTTCGTTACTGGGGCCGTTGGCCACGCCCACAAGCTTTTCTCTTCCACAGCTTCGATTTTTTGTATCAGAATGATTAACCTGAAATTATCGATGTTTTTTCTCCCTCCTAGTTTTTTAATCAGCCACATTCTTTATTCAATCAACCGAAACTTGCTTTCAATACATCTCTCTTTTCTGTTCCCAAT</canonical>
            <polymorphic>ATCGAGCCACTGAAATTGAATATTTTCAAATTAGAAAATCTTCTAGAACTTGACAAAGCGTTTTTAAATCTAGAGACACAGACAACGAGACATTCTAGTTGTTTGTGTCTCTTCAAAATTTCAAAGCGCTGTATCTCATTGTCAGCTCCCAGACAGCCTACTAAGCTGGTTTTTGGACATGATAAGAGCAAACGTTGAGTAATTTCTGAAAACACTTACAGCTAGCGGGAAATGAAGATGAATTTCAATCCAGCAAGGGATTGAAGACAAAAAACCAATTTGTTTTCTGTTAGTCGTAGTGTTCCGTGTATTTATCTCTTTTTCCCTTTCGTTCTCTCTCATACTGCGTCTTGTTTTCTCTCGCAATTCTCTGTCTGTTTCGTGTATCTTTGATTCTTCTGAACTTTTTCCATTTACTTTTGAGTCATTCGTTGTAAACAAGGTCATGATATTTTTCACCAAATCTTGCCGAATTTCGCAATTTGTCGCGATGTTATTCRGAGTCTTTATAATATCCAGATATATCCAAAGATTTCTGAAGTTATTGAATTTTTAGTTTTTATGTTCTCTCCTAGTTTCTAAATCAGCCACGAAAATTGGAGCTGTAAAAGAGAACATTTGGTGGCAGCAACCACCACTGAACTAATTAGCAAATATTGTTTAGTTTTTTTTTCGATTTTCGTCCGTTTTCCGGCAATTTTTTAGATCCAGAAAAATTTATTTATTTTCCTTTTTTGGAGGTTTTCAACACAAAAATTGTCGAAAAGCAATTTCGATCGAGAAGAAATGACCGGAAGATTTAGGTTACGGTGGTTTTCGTTACTGGGGCCGTTGGCCACGCCCACAAGCTTTTCTCTTCCACAGCTTCGATTTTTTGTATCAGAATGATTAACCTGAAATTATCGATGTTTTTTCTCCCTCCTAGTTTTTTAATCAGCCACATTCTTTATTCAATCAACCGAAACTTGCTTTCAATACATCTCTCTTTTCTGTTCCCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACTGCGTCTTGTTTTCTCTC</pcr_primer_p1>
		<pcr_primer_p2>TGGCTGATTTAGAAACTAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATACTGCGTCTTGTTTTCTCTCGCAATTCTCTGTCTGTTTCGTGTATCTTTGATTCTTCTGAACTTTTTCCATTTACTTTTGAGTCATTCGTTGTAAACAAGGTCATGATATTTTTCACCAAATCTTGCCGAATTTCGCAATTTGTCGCGATGTTATTCAGAGTCTTTATAATATCCAGATATATCCAAAGATTTCTGAAGTTATTGAATTTTTAGTTTTTATGTTCTCTCCTAGTTTCTAAATCAGCCA</canonical_amplicon>
		<polymorphic_amplicon>ATACTGCGTCTTGTTTTCTCTCGCAATTCTCTGTCTGTTTCGTGTATCTTTGATTCTTCTGAACTTTTTCCATTTACTTTTGAGTCATTCGTTGTAAACAAGGTCATGATATTTTTCACCAAATCTTGCCGAATTTCGCAATTTGTCGCGATGTTATTCRGAGTCTTTATAATATCCAGATATATCCAAAGATTTCTGAAGTTATTGAATTTTTAGTTTTTATGTTCTCTCCTAGTTTCTAAATCAGCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5359</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>356257</contig_pos>
        <strand>+</strand>
        <context>TGAATTTTTA[A/G]TTTTTATGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTATAATATCCAGATATATCCAAAGATTTCTGAAGTTATTGAATTTTTA</left_flank>
        <right_flank>TTTTTATGTTCTCTCCTAGTTTCTAAATCAGCCACGAAAATTGGAGCTGT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCGTTTTTAAATCTAGAGACACAGACAACGAGACATTCTAGTTGTTTGTGTCTCTTCAAAATTTCAAAGCGCTGTATCTCATTGTCAGCTCCCAGACAGCCTACTAAGCTGGTTTTTGGACATGATAAGAGCAAACGTTGAGTAATTTCTGAAAACACTTACAGCTAGCGGGAAATGAAGATGAATTTCAATCCAGCAAGGGATTGAAGACAAAAAACCAATTTGTTTTCTGTTAGTCGTAGTGTTCCGTGTATTTATCTCTTTTTCCCTTTCGTTCTCTCTCATACTGCGTCTTGTTTTCTCTCGCAATTCTCTGTCTGTTTCGTGTATCTTTGATTCTTCTGAACTTTTTCCATTTACTTTTGAGTCATTCGTTGTAAACAAGGTCATGATATTTTTCACCAAATCTTGCCGAATTTCGCAATTTGTCGCGATGTTATTCAGAGTCTTTATAATATCCAGATATATCCAAAGATTTCTGAAGTTATTGAATTTTTAGTTTTTATGTTCTCTCCTAGTTTCTAAATCAGCCACGAAAATTGGAGCTGTAAAAGAGAACATTTGGTGGCAGCAACCACCACTGAACTAATTAGCAAATATTGTTTAGTTTTTTTTTCGATTTTCGTCCGTTTTCCGGCAATTTTTTAGATCCAGAAAAATTTATTTATTTTCCTTTTTTGGAGGTTTTCAACACAAAAATTGTCGAAAAGCAATTTCGATCGAGAAGAAATGACCGGAAGATTTAGGTTACGGTGGTTTTCGTTACTGGGGCCGTTGGCCACGCCCACAAGCTTTTCTCTTCCACAGCTTCGATTTTTTGTATCAGAATGATTAACCTGAAATTATCGATGTTTTTTCTCCCTCCTAGTTTTTTAATCAGCCACATTCTTTATTCAATCAACCGAAACTTGCTTTCAATACATCTCTCTTTTCTGTTCCCAATCTTTAAAAAATTTTAAATTCACAGATCCCATCATGTCACCTTCTGAAGAAGTTCCG</canonical>
            <polymorphic>AGCGTTTTTAAATCTAGAGACACAGACAACGAGACATTCTAGTTGTTTGTGTCTCTTCAAAATTTCAAAGCGCTGTATCTCATTGTCAGCTCCCAGACAGCCTACTAAGCTGGTTTTTGGACATGATAAGAGCAAACGTTGAGTAATTTCTGAAAACACTTACAGCTAGCGGGAAATGAAGATGAATTTCAATCCAGCAAGGGATTGAAGACAAAAAACCAATTTGTTTTCTGTTAGTCGTAGTGTTCCGTGTATTTATCTCTTTTTCCCTTTCGTTCTCTCTCATACTGCGTCTTGTTTTCTCTCGCAATTCTCTGTCTGTTTCGTGTATCTTTGATTCTTCTGAACTTTTTCCATTTACTTTTGAGTCATTCGTTGTAAACAAGGTCATGATATTTTTCACCAAATCTTGCCGAATTTCGCAATTTGTCGCGATGTTATTCAGAGTCTTTATAATATCCAGATATATCCAAAGATTTCTGAAGTTATTGAATTTTTARTTTTTATGTTCTCTCCTAGTTTCTAAATCAGCCACGAAAATTGGAGCTGTAAAAGAGAACATTTGGTGGCAGCAACCACCACTGAACTAATTAGCAAATATTGTTTAGTTTTTTTTTCGATTTTCGTCCGTTTTCCGGCAATTTTTTAGATCCAGAAAAATTTATTTATTTTCCTTTTTTGGAGGTTTTCAACACAAAAATTGTCGAAAAGCAATTTCGATCGAGAAGAAATGACCGGAAGATTTAGGTTACGGTGGTTTTCGTTACTGGGGCCGTTGGCCACGCCCACAAGCTTTTCTCTTCCACAGCTTCGATTTTTTGTATCAGAATGATTAACCTGAAATTATCGATGTTTTTTCTCCCTCCTAGTTTTTTAATCAGCCACATTCTTTATTCAATCAACCGAAACTTGCTTTCAATACATCTCTCTTTTCTGTTCCCAATCTTTAAAAAATTTTAAATTCACAGATCCCATCATGTCACCTTCTGAAGAAGTTCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTGTCGCGATGTTATTC</pcr_primer_p1>
		<pcr_primer_p2>AAACATCGATAATTTCAGGTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>432</pcr_amplicon_size>
		<canonical_amplicon>AATTTGTCGCGATGTTATTCAGAGTCTTTATAATATCCAGATATATCCAAAGATTTCTGAAGTTATTGAATTTTTAGTTTTTATGTTCTCTCCTAGTTTCTAAATCAGCCACGAAAATTGGAGCTGTAAAAGAGAACATTTGGTGGCAGCAACCACCACTGAACTAATTAGCAAATATTGTTTAGTTTTTTTTTCGATTTTCGTCCGTTTTCCGGCAATTTTTTAGATCCAGAAAAATTTATTTATTTTCCTTTTTTGGAGGTTTTCAACACAAAAATTGTCGAAAAGCAATTTCGATCGAGAAGAAATGACCGGAAGATTTAGGTTACGGTGGTTTTCGTTACTGGGGCCGTTGGCCACGCCCACAAGCTTTTCTCTTCCACAGCTTCGATTTTTTGTATCAGAATGATTAACCTGAAATTATCGATGTTT</canonical_amplicon>
		<polymorphic_amplicon>AATTTGTCGCGATGTTATTCAGAGTCTTTATAATATCCAGATATATCCAAAGATTTCTGAAGTTATTGAATTTTTARTTTTTATGTTCTCTCCTAGTTTCTAAATCAGCCACGAAAATTGGAGCTGTAAAAGAGAACATTTGGTGGCAGCAACCACCACTGAACTAATTAGCAAATATTGTTTAGTTTTTTTTTCGATTTTCGTCCGTTTTCCGGCAATTTTTTAGATCCAGAAAAATTTATTTATTTTCCTTTTTTGGAGGTTTTCAACACAAAAATTGTCGAAAAGCAATTTCGATCGAGAAGAAATGACCGGAAGATTTAGGTTACGGTGGTTTTCGTTACTGGGGCCGTTGGCCACGCCCACAAGCTTTTCTCTTCCACAGCTTCGATTTTTTGTATCAGAATGATTAACCTGAAATTATCGATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5360</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>358751</contig_pos>
        <strand>+</strand>
        <context>TCGATCCATA[C/T]GAAAGTTTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTGTGGTCGTGGAAATTGTGTACAAATCTACAGTAAAATCGATCCATA</left_flank>
        <right_flank>GAAAGTTTAACATTGAATGTCTCAAGTGACTGCGTGGCAATTTACTGGAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCATGTTTTGTATTTTCGCAAAAAAAAGTGAAATTTGCTGAGAAATGGATGAAAAAATGTAACTTCGAGTTGAAGGATATCAAAATCGAAATGAAGAACTATCCGATGGATAAAAGTAAAATTAAGAGTCTTCCGAAATGTAAATGTATTCGAATTGGCTCTGATGACGTGGAAACATTCCGTTGGTGGCTCCAGAAAGTTCCAAATCAGCTGAAAGATGTTGAACTGGTTGCACTGGATGCTGATCGCGAAGTCTTCACTATCCCATCAGATCTTCTGAACGCTCCACAGGTAACTTGAATTTTTGAAAAAACTTGAATTGACACGTGGATTGGAATATAGGCAATGGGATGCTGAATTTGAAGAGGAAGCGTAAGTCGCTATTAATCAGGAATCTAATAAATTCTTTGAAAATTTCAGAGCAGGATTCTGTGGCGATTTCGAGCGAGTTTGTGGTCGTGGAAATTGTGTACAAATCTACAGTAAAATCGATCCATACGAAAGTTTAACATTGAATGTCTCAAGTGACTGCGTGGCAATTTACTGGACCGGACACAAACATGAATATAATGGAAGAACGTATTCCTATTATTCGATTCCTTGAAATTCTGACATTCGTTTTGTAATCTTTAAAAATGAATTTATTTATCTGTCGTTTATTATTAGCTTTTATAGCTTCTCGGAACTTAAAATTGAAAAATAAACAATGGAAATTGAACTCATGTGAACGTTAACCATTGAAAAAAACTATTAAAAAATATATTTATGAAATTGAAGAAATCGGGCGAGGAGTTGGAGACATTGTGAACAGAACTCGATCGAGCCACTGAAATCAAATAATTTGGAATTTAAAAAAAAGTCATTTACCGTAAAACCTGATTAGAAGAGTCTACTAGCAGGAAAATTTGAGACAATTTATCTCGGGTCCGGACAGGGTTGCGGATTGACGGGCCGGCCCGGCCCGGCCCGTCGGCCCGTCCATAGCTTTTTCAGAGAAAA</canonical>
            <polymorphic>ATCATGTTTTGTATTTTCGCAAAAAAAAGTGAAATTTGCTGAGAAATGGATGAAAAAATGTAACTTCGAGTTGAAGGATATCAAAATCGAAATGAAGAACTATCCGATGGATAAAAGTAAAATTAAGAGTCTTCCGAAATGTAAATGTATTCGAATTGGCTCTGATGACGTGGAAACATTCCGTTGGTGGCTCCAGAAAGTTCCAAATCAGCTGAAAGATGTTGAACTGGTTGCACTGGATGCTGATCGCGAAGTCTTCACTATCCCATCAGATCTTCTGAACGCTCCACAGGTAACTTGAATTTTTGAAAAAACTTGAATTGACACGTGGATTGGAATATAGGCAATGGGATGCTGAATTTGAAGAGGAAGCGTAAGTCGCTATTAATCAGGAATCTAATAAATTCTTTGAAAATTTCAGAGCAGGATTCTGTGGCGATTTCGAGCGAGTTTGTGGTCGTGGAAATTGTGTACAAATCTACAGTAAAATCGATCCATAYGAAAGTTTAACATTGAATGTCTCAAGTGACTGCGTGGCAATTTACTGGACCGGACACAAACATGAATATAATGGAAGAACGTATTCCTATTATTCGATTCCTTGAAATTCTGACATTCGTTTTGTAATCTTTAAAAATGAATTTATTTATCTGTCGTTTATTATTAGCTTTTATAGCTTCTCGGAACTTAAAATTGAAAAATAAACAATGGAAATTGAACTCATGTGAACGTTAACCATTGAAAAAAACTATTAAAAAATATATTTATGAAATTGAAGAAATCGGGCGAGGAGTTGGAGACATTGTGAACAGAACTCGATCGAGCCACTGAAATCAAATAATTTGGAATTTAAAAAAAAGTCATTTACCGTAAAACCTGATTAGAAGAGTCTACTAGCAGGAAAATTTGAGACAATTTATCTCGGGTCCGGACAGGGTTGCGGATTGACGGGCCGGCCCGGCCCGGCCCGTCGGCCCGTCCATAGCTTTTTCAGAGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCGCTATTAATCAGGAATCTAA</pcr_primer_p1>
		<pcr_primer_p2>TTACAAAACGAATGTCAGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCGCTATTAATCAGGAATCTAATAAATTCTTTGAAAATTTCAGAGCAGGATTCTGTGGCGATTTCGAGCGAGTTTGTGGTCGTGGAAATTGTGTACAAATCTACAGTAAAATCGATCCATACGAAAGTTTAACATTGAATGTCTCAAGTGACTGCGTGGCAATTTACTGGACCGGACACAAACATGAATATAATGGAAGAACGTATTCCTATTATTCGATTCCTTGAAATTCTGACATTCGTTTTGTAA</canonical_amplicon>
		<polymorphic_amplicon>GTCGCTATTAATCAGGAATCTAATAAATTCTTTGAAAATTTCAGAGCAGGATTCTGTGGCGATTTCGAGCGAGTTTGTGGTCGTGGAAATTGTGTACAAATCTACAGTAAAATCGATCCATAYGAAAGTTTAACATTGAATGTCTCAAGTGACTGCGTGGCAATTTACTGGACCGGACACAAACATGAATATAATGGAAGAACGTATTCCTATTATTCGATTCCTTGAAATTCTGACATTCGTTTTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5361</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>358548</contig_pos>
        <strand>+</strand>
        <context>CCACAGGTAA[C/T]TTGAATTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGCGAAGTCTTCACTATCCCATCAGATCTTCTGAACGCTCCACAGGTAA</left_flank>
        <right_flank>TTGAATTTTTGAAAAAACTTGAATTGACACGTGGATTGGAATATAGGCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACTGGGTATTAATTTACAAAACCGGAAACAAAATGGAAGATAATGGACACACATATTCTGATTACTCGATTCCTTTCTGAACGTTGTTTTTAAAAAATCCAACTATCGCTTTTTTTGGAGTTTGGTTGAAATAAAGATGGTTGTTTTAGTTCTAAGAAAAGGAAAACTATGATTCCCAAGGATGTGCATCGTCACTTTTCGAATCATGTTTTGTATTTTCGCAAAAAAAAGTGAAATTTGCTGAGAAATGGATGAAAAAATGTAACTTCGAGTTGAAGGATATCAAAATCGAAATGAAGAACTATCCGATGGATAAAAGTAAAATTAAGAGTCTTCCGAAATGTAAATGTATTCGAATTGGCTCTGATGACGTGGAAACATTCCGTTGGTGGCTCCAGAAAGTTCCAAATCAGCTGAAAGATGTTGAACTGGTTGCACTGGATGCTGATCGCGAAGTCTTCACTATCCCATCAGATCTTCTGAACGCTCCACAGGTAACTTGAATTTTTGAAAAAACTTGAATTGACACGTGGATTGGAATATAGGCAATGGGATGCTGAATTTGAAGAGGAAGCGTAAGTCGCTATTAATCAGGAATCTAATAAATTCTTTGAAAATTTCAGAGCAGGATTCTGTGGCGATTTCGAGCGAGTTTGTGGTCGTGGAAATTGTGTACAAATCTACAGTAAAATCGATCCATACGAAAGTTTAACATTGAATGTCTCAAGTGACTGCGTGGCAATTTACTGGACCGGACACAAACATGAATATAATGGAAGAACGTATTCCTATTATTCGATTCCTTGAAATTCTGACATTCGTTTTGTAATCTTTAAAAATGAATTTATTTATCTGTCGTTTATTATTAGCTTTTATAGCTTCTCGGAACTTAAAATTGAAAAATAAACAATGGAAATTGAACTCATGTGAACGTTAACCATTGAAAAAAACTATTAAAAAATATATTTATGAAATTGAAGAAATCGGGCGAGGAGTTGG</canonical>
            <polymorphic>GACTGGGTATTAATTTACAAAACCGGAAACAAAATGGAAGATAATGGACACACATATTCTGATTACTCGATTCCTTTCTGAACGTTGTTTTTAAAAAATCCAACTATCGCTTTTTTTGGAGTTTGGTTGAAATAAAGATGGTTGTTTTAGTTCTAAGAAAAGGAAAACTATGATTCCCAAGGATGTGCATCGTCACTTTTCGAATCATGTTTTGTATTTTCGCAAAAAAAAGTGAAATTTGCTGAGAAATGGATGAAAAAATGTAACTTCGAGTTGAAGGATATCAAAATCGAAATGAAGAACTATCCGATGGATAAAAGTAAAATTAAGAGTCTTCCGAAATGTAAATGTATTCGAATTGGCTCTGATGACGTGGAAACATTCCGTTGGTGGCTCCAGAAAGTTCCAAATCAGCTGAAAGATGTTGAACTGGTTGCACTGGATGCTGATCGCGAAGTCTTCACTATCCCATCAGATCTTCTGAACGCTCCACAGGTAAYTTGAATTTTTGAAAAAACTTGAATTGACACGTGGATTGGAATATAGGCAATGGGATGCTGAATTTGAAGAGGAAGCGTAAGTCGCTATTAATCAGGAATCTAATAAATTCTTTGAAAATTTCAGAGCAGGATTCTGTGGCGATTTCGAGCGAGTTTGTGGTCGTGGAAATTGTGTACAAATCTACAGTAAAATCGATCCATACGAAAGTTTAACATTGAATGTCTCAAGTGACTGCGTGGCAATTTACTGGACCGGACACAAACATGAATATAATGGAAGAACGTATTCCTATTATTCGATTCCTTGAAATTCTGACATTCGTTTTGTAATCTTTAAAAATGAATTTATTTATCTGTCGTTTATTATTAGCTTTTATAGCTTCTCGGAACTTAAAATTGAAAAATAAACAATGGAAATTGAACTCATGTGAACGTTAACCATTGAAAAAAACTATTAAAAAATATATTTATGAAATTGAAGAAATCGGGCGAGGAGTTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>272 233 233 191 71</canonical_bands>
                <polymorphic_bands>466 272 191 71</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTCCGAAATGTAAATGTATTC</pcr_primer_p1>
		<pcr_primer_p2>ACTTACGCTTCCTCTTCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTCCGAAATGTAAATGTATTCGAATTGGCTCTGATGACGTGGAAACATTCCGTTGGTGGCTCCAGAAAGTTCCAAATCAGCTGAAAGATGTTGAACTGGTTGCACTGGATGCTGATCGCGAAGTCTTCACTATCCCATCAGATCTTCTGAACGCTCCACAGGTAACTTGAATTTTTGAAAAAACTTGAATTGACACGTGGATTGGAATATAGGCAATGGGATGCTGAATTTGAAGAGGAAGCGTAAGT</canonical_amplicon>
		<polymorphic_amplicon>TCTTCCGAAATGTAAATGTATTCGAATTGGCTCTGATGACGTGGAAACATTCCGTTGGTGGCTCCAGAAAGTTCCAAATCAGCTGAAAGATGTTGAACTGGTTGCACTGGATGCTGATCGCGAAGTCTTCACTATCCCATCAGATCTTCTGAACGCTCCACAGGTAAYTTGAATTTTTGAAAAAACTTGAATTGACACGTGGATTGGAATATAGGCAATGGGATGCTGAATTTGAAGAGGAAGCGTAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5362</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>24421</contig_pos>
        <strand></strand>
        <context>AGCGGTGACG[G/A]CGTGTTTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATATCTAAAAAGACGAAGGAGCAGGTGAAAGTGAGAACAAGCGGTGACG</left_flank>
        <right_flank>CGTGTTTTCAGCTGTTCCATTTTTCAGCATTTCGGAGTTTTGAGGTGCTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCACAAATCTCAAATTTACAATTTTCAGTGAAAAGAGACTACGATTTCGTTCGATTCGGAAGATCTGCTCCAATGAAAAAAGCGTCGTACGATTACATCCGATTCGGACGGAAATGACCGTTGTTTCTCTGATCCTCTGCGTCTCTCTGTAAATCCTGTGTGCCATAAAATGCTCTCTCTCTCATCATCATGCCTTCTTCATCCACTCAAGTAGATCCACCATCGCAATTCTCCACTGTATTATTCCCCCCATAAGCACCATCTGACATGTGATACGCATTAATACCGCTTATGAATCATATTGTGGCCTCTCGCTATCCTTCATCTCGAATAAAAACGCACCGTTGACTTTATATTTCTTTTTCAGAAGAAGTCAAACTTCAGATGATTGATTCAGAATTCCAAGAGATTTTTATTCCAATTTCTCTAAATCTCTTTCAATTACTGCAATATCTAAAAAGACGAAGGAGCAGGTGAAAGTGAGAACAAGCGGTGACGGCGTGTTTTCAGCTGTTCCATTTTTCAGCATTTCGGAGTTTTGAGGTGCTTGAAAAGGTTGTAAAGTGATCGATAATATCGAAGAAATAGGAAAAATGAACAGAAAAAAGGAGTGAAAGGTGTTATTCTGGTAAAAAAAAGGGATATTTGAAAGAGAAACAGCGGTGGCTGTGGCCGAAAACCTAAACATACCGTAAACACTCTAATAGAAGTCCACCCAAACCGCTAACTTTGAACCCAAATATCAGTCGTACCAGGGATGAGAACTCGGAAAATGAGAACTCAGTTTATCAGCTCTAACTTCCGGCTCAGGATCCAACTTTTTTAGGAAAATATTTTCGAAATAGTCTCGGTCTTCACAAAACGTTAAGATTTTCCAAAAATCCCTGTTTTTACATGTATTTTACGAATTCTTATTCGTAGGAGTTTTTATTTGTATCAGTTCTTATTTTCCGAATTCTCATCGCTGGTACCACCCGAATATCTCGGTTTTTGAAAAGA</canonical>
            <polymorphic>ACCACAAATCTCAAATTTACAATTTTCAGTGAAAAGAGACTACGATTTCGTTCGATTCGGAAGATCTGCTCCAATGAAAAAAGCGTCGTACGATTACATCCGATTCGGACGGAAATGACCGTTGTTTCTCTGATCCTCTGCGTCTCTCTGTAAATCCTGTGTGCCATAAAATGCTCTCTCTCTCATCATCATGCCTTCTTCATCCACTCAAGTAGATCCACCATCGCAATTCTCCACTGTATTATTCCCCCCATAAGCACCATCTGACATGTGATACGCATTAATACCGCTTATGAATCATATTGTGGCCTCTCGCTATCCTTCATCTCGAATAAAAACGCACCGTTGACTTTATATTTCTTTTTCAGAAGAAGTCAAACTTCAGATGATTGATTCAGAATTCCAAGAGATTTTTATTCCAATTTCTCTAAATCTCTTTCAATTACTGCAATATCTAAAAAGACGAAGGAGCAGGTGAAAGTGAGAACAAGCGGTGACGRCGTGTTTTCAGCTGTTCCATTTTTCAGCATTTCGGAGTTTTGAGGTGCTTGAAAAGGTTGTAAAGTGATCGATAATATCGAAGAAATAGGAAAAATGAACAGAAAAAAGGAGTGAAAGGTGTTATTCTGGTAAAAAAAAGGGATATTTGAAAGAGAAACAGCGGTGGCTGTGGCCGAAAACCTAAACATACCGTAAACACTCTAATAGAAGTCCACCCAAACCGCTAACTTTGAACCCAAATATCAGTCGTACCAGGGATGAGAACTCGGAAAATGAGAACTCAGTTTATCAGCTCTAACTTCCGGCTCAGGATCCAACTTTTTTAGGAAAATATTTTCGAAATAGTCTCGGTCTTCACAAAACGTTAAGATTTTCCAAAAATCCCTGTTTTTACATGTATTTTACGAATTCTTATTCGTAGGAGTTTTTATTTGTATCAGTTCTTATTTTCCGAATTCTCATCGCTGGTACCACCCGAATATCTCGGTTTTTGAAAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCCTTCATCTCGAATAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>ACTTTACAACCTTTTCAAGCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATCCTTCATCTCGAATAAAAACGCACCGTTGACTTTATATTTCTTTTTCAGAAGAAGTCAAACTTCAGATGATTGATTCAGAATTCCAAGAGATTTTTATTCCAATTTCTCTAAATCTCTTTCAATTACTGCAATATCTAAAAAGACGAAGGAGCAGGTGAAAGTGAGAACAAGCGGTGACGGCGTGTTTTCAGCTGTTCCATTTTTCAGCATTTCGGAGTTTTGAGGTGCTTGAAAAGGTTGTAAAGT</canonical_amplicon>
		<polymorphic_amplicon>TATCCTTCATCTCGAATAAAAACGCACCGTTGACTTTATATTTCTTTTTCAGAAGAAGTCAAACTTCAGATGATTGATTCAGAATTCCAAGAGATTTTTATTCCAATTTCTCTAAATCTCTTTCAATTACTGCAATATCTAAAAAGACGAAGGAGCAGGTGAAAGTGAGAACAAGCGGTGACGRCGTGTTTTCAGCTGTTCCATTTTTCAGCATTTCGGAGTTTTGAGGTGCTTGAAAAGGTTGTAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5363</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>23951</contig_pos>
        <strand></strand>
        <context>CAATTTTCAG[T/A]GAAAAGAGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GTTAAAAGTCGAAAATTCAGAACCACAAATCTCAAATTTACAATTTTCAG</left_flank>
        <right_flank>GAAAAGAGACTACGATTTCGTTCGATTCGGAAGATCTGCTCCAATGAAAA</right_flank>
        <qual_score>35</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAATCCTCGAAAATTGAATTGAAACTTATTGGAACAAACTTATACTTTATTGGGTTAGTGAAATGTACGTAAGCCGAAAATGTCCAAGTTTTTGGAATAAAGTCAGGTGGCCTTGAAATCAATGATTGATCTATCTAAATGTCGATTTGTAGTGATCTAGAAAATTCTGAACAATGTTTGGTCCAGAATTCTAAAACTTTTATTTTTTTTTTATAGTGAATAGCTGGGGTTTTCACCACCTGATTATTCCAAAATCCCAGAATTTCGCTCTCGTTTGTTATCTAATCATCTGGGTTGACACATGTCCAGTTAATCAAAAAATTGTTTTGCACTCAAAAATAACATTTTTGAAACAAGGAAGTCATGCGACTTGGGTGGGGATATAATCTAATATTGCTTTAACTTTTTGACTCAACATTTTAGAATTCTAGACACTTCGAATTTTGTTAAAAGTCGAAAATTCAGAACCACAAATCTCAAATTTACAATTTTCAGTGAAAAGAGACTACGATTTCGTTCGATTCGGAAGATCTGCTCCAATGAAAAAAGCGTCGTACGATTACATCCGATTCGGACGGAAATGACCGTTGTTTCTCTGATCCTCTGCGTCTCTCTGTAAATCCTGTGTGCCATAAAATGCTCTCTCTCTCATCATCATGCCTTCTTCATCCACTCAAGTAGATCCACCATCGCAATTCTCCACTGTATTATTCCCCCCATAAGCACCATCTGACATGTGATACGCATTAATACCGCTTATGAATCATATTGTGGCCTCTCGCTATCCTTCATCTCGAATAAAAACGCACCGTTGACTTTATATTTCTTTTTCAGAAGAAGTCAAACTTCAGATGATTGATTCAGAATTCCAAGAGATTTTTATTCCAATTTCTCTAAATCTCTTTCAATTACTGCAATATCTAAAAAGACGAAGGAGCAGGTGAAAGTGAGAACAAGCGGTGACGGCGTGTTTTCAGCTGTTCCATTTTTCAGCAT</canonical>
            <polymorphic>AAAAAAATCCTCGAAAATTGAATTGAAACTTATTGGAACAAACTTATACTTTATTGGGTTAGTGAAATGTACGTAAGCCGAAAATGTCCAAGTTTTTGGAATAAAGTCAGGTGGCCTTGAAATCAATGATTGATCTATCTAAATGTCGATTTGTAGTGATCTAGAAAATTCTGAACAATGTTTGGTCCAGAATTCTAAAACTTTTATTTTTTTTTTATAGTGAATAGCTGGGGTTTTCACCACCTGATTATTCCAAAATCCCAGAATTTCGCTCTCGTTTGTTATCTAATCATCTGGGTTGACACATGTCCAGTTAATCAAAAAATTGTTTTGCACTCAAAAATAACATTTTTGAAACAAGGAAGTCATGCGACTTGGGTGGGGATATAATCTAATATTGCTTTAACTTTTTGACTCAACATTTTAGAATTCTAGACACTTCGAATTTTGTTAAAAGTCGAAAATTCAGAACCACAAATCTCAAATTTACAATTTTCAGWGAAAAGAGACTACGATTTCGTTCGATTCGGAAGATCTGCTCCAATGAAAAAAGCGTCGTACGATTACATCCGATTCGGACGGAAATGACCGTTGTTTCTCTGATCCTCTGCGTCTCTCTGTAAATCCTGTGTGCCATAAAATGCTCTCTCTCTCATCATCATGCCTTCTTCATCCACTCAAGTAGATCCACCATCGCAATTCTCCACTGTATTATTCCCCCCATAAGCACCATCTGACATGTGATACGCATTAATACCGCTTATGAATCATATTGTGGCCTCTCGCTATCCTTCATCTCGAATAAAAACGCACCGTTGACTTTATATTTCTTTTTCAGAAGAAGTCAAACTTCAGATGATTGATTCAGAATTCCAAGAGATTTTTATTCCAATTTCTCTAAATCTCTTTCAATTACTGCAATATCTAAAAAGACGAAGGAGCAGGTGAAAGTGAGAACAAGCGGTGACGGCGTGTTTTCAGCTGTTCCATTTTTCAGCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>135 130 64 64 62 57 49 46 45 43 36 35 34 31 27 26 23 17 16 14 14 13 8 6 3 2</canonical_bands>
                <polymorphic_bands>157 135 64 64 62 57 49 46 45 43 36 35 34 31 26 23 17 16 14 14 13 8 6 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGTTAAAAGTCGAAAATTCAG</pcr_primer_p1>
		<pcr_primer_p2>GATCTACTTGAGTGGATGAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTGTTAAAAGTCGAAAATTCAGAACCACAAATCTCAAATTTACAATTTTCAGTGAAAAGAGACTACGATTTCGTTCGATTCGGAAGATCTGCTCCAATGAAAAAAGCGTCGTACGATTACATCCGATTCGGACGGAAATGACCGTTGTTTCTCTGATCCTCTGCGTCTCTCTGTAAATCCTGTGTGCCATAAAATGCTCTCTCTCTCATCATCATGCCTTCTTCATCCACTCAAGTAGATC</canonical_amplicon>
		<polymorphic_amplicon>TTTGTTAAAAGTCGAAAATTCAGAACCACAAATCTCAAATTTACAATTTTCAGWGAAAAGAGACTACGATTTCGTTCGATTCGGAAGATCTGCTCCAATGAAAAAAGCGTCGTACGATTACATCCGATTCGGACGGAAATGACCGTTGTTTCTCTGATCCTCTGCGTCTCTCTGTAAATCCTGTGTGCCATAAAATGCTCTCTCTCTCATCATCATGCCTTCTTCATCCACTCAAGTAGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5364</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>80353</contig_pos>
        <strand>+</strand>
        <context>TTCCTCCATT[C/T]CAAAGAAACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAGGATATTTATACTTCAAACTTCTAAGATCCTGTTGTATTCCTCCATT</left_flank>
        <right_flank>CAAAGAAACATAAAAGAATCGTAGATTACTTTGAAGATATTACCATTGAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTAGCCTAATATCGGAAGTGTTTTGTCAGTTGACACATTTTTGATATCTTGCATAGAAGTTGAGATAATTGAGCTCAAACTTGTGGGGTTTTTTTACAGGCTCAACGGTAAATGTTCTGTGGACCCACCAAATTTGTGTGCGCGGATGGTAGAGTACTGTAGTGTTGGTGTGAGGATCGATTCTGAGCTGTCTCGCAAAAAAGTCGGCTCGGTGAATGATGTGAAAGGAATAAAGGAACTGAAAACAAGATTGTTAGTAGCAAAGCGTCCCTGTCACTTACTGTATTTGTATACCAAACTGCAAAATCATAGTCACCAAGTCTCGGACTTCCAAATGTCACAACTTTAATATCTTCTGCTTTGTACAAACCAGTGGTTACGAGATAAGAAGATGCAACTCACGAAAGCATTCCTCCGAGTGAATGTCCATTGATCCATAATTCAAATCCAGGATATTTATACTTCAAACTTCTAAGATCCTGTTGTATTCCTCCATTTCAAAGAAACATAAAAGAATCGTAGATTACTTTGAAGATATTACCATTGATATCAGGATACCACTGGATTCCTCTGAAAGAGAACAATGCAACTATTTCTTTCGAATTTTCCAAACTCATTAATAAATCCATTATTCAATTGTTCACTCTGATCAGTTCCACTGGACCCTCTGAACGAGAGAACGATCACTTTTTGGGTGACGTCATAAGCGGTGAACCCACGACATGATATCTGAACGAACTCCTGATTTTCAGAATTTAAATTCGTACCACATACTCGCATTTCCCTCCGAACAAGTAACGGCTCGAAGTTTGAAAAGTTTCATCGTGGGAATTTGATTTCTGAAAAAAAATTCGAGAGAGATTTTTGATCGACAATTTTCAAGAAAATTCATTCTTTGAACTCAATCAAATGATGCGAATTGCAACAATGATGCGAATTGCAACACAACCCAATAAAATTGTTTGTAAAGAAGTTAACTTTTGATCTCAAAAAATGTT</canonical>
            <polymorphic>GCTTAGCCTAATATCGGAAGTGTTTTGTCAGTTGACACATTTTTGATATCTTGCATAGAAGTTGAGATAATTGAGCTCAAACTTGTGGGGTTTTTTTACAGGCTCAACGGTAAATGTTCTGTGGACCCACCAAATTTGTGTGCGCGGATGGTAGAGTACTGTAGTGTTGGTGTGAGGATCGATTCTGAGCTGTCTCGCAAAAAAGTCGGCTCGGTGAATGATGTGAAAGGAATAAAGGAACTGAAAACAAGATTGTTAGTAGCAAAGCGTCCCTGTCACTTACTGTATTTGTATACCAAACTGCAAAATCATAGTCACCAAGTCTCGGACTTCCAAATGTCACAACTTTAATATCTTCTGCTTTGTACAAACCAGTGGTTACGAGATAAGAAGATGCAACTCACGAAAGCATTCCTCCGAGTGAATGTCCATTGATCCATAATTCAAATCCAGGATATTTATACTTCAAACTTCTAAGATCCTGTTGTATTCCTCCATTYCAAAGAAACATAAAAGAATCGTAGATTACTTTGAAGATATTACCATTGATATCAGGATACCACTGGATTCCTCTGAAAGAGAACAATGCAACTATTTCTTTCGAATTTTCCAAACTCATTAATAAATCCATTATTCAATTGTTCACTCTGATCAGTTCCACTGGACCCTCTGAACGAGAGAACGATCACTTTTTGGGTGACGTCATAAGCGGTGAACCCACGACATGATATCTGAACGAACTCCTGATTTTCAGAATTTAAATTCGTACCACATACTCGCATTTCCCTCCGAACAAGTAACGGCTCGAAGTTTGAAAAGTTTCATCGTGGGAATTTGATTTCTGAAAAAAAATTCGAGAGAGATTTTTGATCGACAATTTTCAAGAAAATTCATTCTTTGAACTCAATCAAATGATGCGAATTGCAACAATGATGCGAATTGCAACACAACCCAATAAAATTGTTTGTAAAGAAGTTAACTTTTGATCTCAAAAAATGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTGGTTACGAGATAAGAAGAT</pcr_primer_p1>
		<pcr_primer_p2>TTGGAAAATTCGAAAGAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CAGTGGTTACGAGATAAGAAGATGCAACTCACGAAAGCATTCCTCCGAGTGAATGTCCATTGATCCATAATTCAAATCCAGGATATTTATACTTCAAACTTCTAAGATCCTGTTGTATTCCTCCATTTCAAAGAAACATAAAAGAATCGTAGATTACTTTGAAGATATTACCATTGATATCAGGATACCACTGGATTCCTCTGAAAGAGAACAATGCAACTATTTCTTTCGAATTTTCCAA</canonical_amplicon>
		<polymorphic_amplicon>CAGTGGTTACGAGATAAGAAGATGCAACTCACGAAAGCATTCCTCCGAGTGAATGTCCATTGATCCATAATTCAAATCCAGGATATTTATACTTCAAACTTCTAAGATCCTGTTGTATTCCTCCATTYCAAAGAAACATAAAAGAATCGTAGATTACTTTGAAGATATTACCATTGATATCAGGATACCACTGGATTCCTCTGAAAGAGAACAATGCAACTATTTCTTTCGAATTTTCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5365</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>80254</contig_pos>
        <strand>+</strand>
        <context>AAGATGCAAC[C/T]CACGAAAGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATATCTTCTGCTTTGTACAAACCAGTGGTTACGAGATAAGAAGATGCAAC</left_flank>
        <right_flank>CACGAAAGCATTCCTCCGAGTGAATGTCCATTGATCCATAATTCAAATCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTGTTATACCTAAAAATGTTATCTGGTTATACTTAATTCTTAGCTAATTTTTCTTTGCTATTATACAAGATATCAAAATTGTGTCAACTGATAAATTGCTTAGCCTAATATCGGAAGTGTTTTGTCAGTTGACACATTTTTGATATCTTGCATAGAAGTTGAGATAATTGAGCTCAAACTTGTGGGGTTTTTTTACAGGCTCAACGGTAAATGTTCTGTGGACCCACCAAATTTGTGTGCGCGGATGGTAGAGTACTGTAGTGTTGGTGTGAGGATCGATTCTGAGCTGTCTCGCAAAAAAGTCGGCTCGGTGAATGATGTGAAAGGAATAAAGGAACTGAAAACAAGATTGTTAGTAGCAAAGCGTCCCTGTCACTTACTGTATTTGTATACCAAACTGCAAAATCATAGTCACCAAGTCTCGGACTTCCAAATGTCACAACTTTAATATCTTCTGCTTTGTACAAACCAGTGGTTACGAGATAAGAAGATGCAACTCACGAAAGCATTCCTCCGAGTGAATGTCCATTGATCCATAATTCAAATCCAGGATATTTATACTTCAAACTTCTAAGATCCTGTTGTATTCCTCCATTTCAAAGAAACATAAAAGAATCGTAGATTACTTTGAAGATATTACCATTGATATCAGGATACCACTGGATTCCTCTGAAAGAGAACAATGCAACTATTTCTTTCGAATTTTCCAAACTCATTAATAAATCCATTATTCAATTGTTCACTCTGATCAGTTCCACTGGACCCTCTGAACGAGAGAACGATCACTTTTTGGGTGACGTCATAAGCGGTGAACCCACGACATGATATCTGAACGAACTCCTGATTTTCAGAATTTAAATTCGTACCACATACTCGCATTTCCCTCCGAACAAGTAACGGCTCGAAGTTTGAAAAGTTTCATCGTGGGAATTTGATTTCTGAAAAAAAATTCGAGAGAGATTTTTGATCGACAATTTTCAAGAAAATTCATTCTTTGA</canonical>
            <polymorphic>AGTTGTTATACCTAAAAATGTTATCTGGTTATACTTAATTCTTAGCTAATTTTTCTTTGCTATTATACAAGATATCAAAATTGTGTCAACTGATAAATTGCTTAGCCTAATATCGGAAGTGTTTTGTCAGTTGACACATTTTTGATATCTTGCATAGAAGTTGAGATAATTGAGCTCAAACTTGTGGGGTTTTTTTACAGGCTCAACGGTAAATGTTCTGTGGACCCACCAAATTTGTGTGCGCGGATGGTAGAGTACTGTAGTGTTGGTGTGAGGATCGATTCTGAGCTGTCTCGCAAAAAAGTCGGCTCGGTGAATGATGTGAAAGGAATAAAGGAACTGAAAACAAGATTGTTAGTAGCAAAGCGTCCCTGTCACTTACTGTATTTGTATACCAAACTGCAAAATCATAGTCACCAAGTCTCGGACTTCCAAATGTCACAACTTTAATATCTTCTGCTTTGTACAAACCAGTGGTTACGAGATAAGAAGATGCAACYCACGAAAGCATTCCTCCGAGTGAATGTCCATTGATCCATAATTCAAATCCAGGATATTTATACTTCAAACTTCTAAGATCCTGTTGTATTCCTCCATTTCAAAGAAACATAAAAGAATCGTAGATTACTTTGAAGATATTACCATTGATATCAGGATACCACTGGATTCCTCTGAAAGAGAACAATGCAACTATTTCTTTCGAATTTTCCAAACTCATTAATAAATCCATTATTCAATTGTTCACTCTGATCAGTTCCACTGGACCCTCTGAACGAGAGAACGATCACTTTTTGGGTGACGTCATAAGCGGTGAACCCACGACATGATATCTGAACGAACTCCTGATTTTCAGAATTTAAATTCGTACCACATACTCGCATTTCCCTCCGAACAAGTAACGGCTCGAAGTTTGAAAAGTTTCATCGTGGGAATTTGATTTCTGAAAAAAAATTCGAGAGAGATTTTTGATCGACAATTTTCAAGAAAATTCATTCTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>501 190 151 112 27 19</canonical_bands>
                <polymorphic_bands>652 190 112 27 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGAATGATGTGAAAGGAATAAA</pcr_primer_p1>
		<pcr_primer_p2>AATATCCTGGATTTGAATTATGG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTGAATGATGTGAAAGGAATAAAGGAACTGAAAACAAGATTGTTAGTAGCAAAGCGTCCCTGTCACTTACTGTATTTGTATACCAAACTGCAAAATCATAGTCACCAAGTCTCGGACTTCCAAATGTCACAACTTTAATATCTTCTGCTTTGTACAAACCAGTGGTTACGAGATAAGAAGATGCAACTCACGAAAGCATTCCTCCGAGTGAATGTCCATTGATCCATAATTCAAATCCAGGATATT</canonical_amplicon>
		<polymorphic_amplicon>GTGAATGATGTGAAAGGAATAAAGGAACTGAAAACAAGATTGTTAGTAGCAAAGCGTCCCTGTCACTTACTGTATTTGTATACCAAACTGCAAAATCATAGTCACCAAGTCTCGGACTTCCAAATGTCACAACTTTAATATCTTCTGCTTTGTACAAACCAGTGGTTACGAGATAAGAAGATGCAACYCACGAAAGCATTCCTCCGAGTGAATGTCCATTGATCCATAATTCAAATCCAGGATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5366</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>123307</contig_pos>
        <strand></strand>
        <context>GAAAACACAA[G/A]GAAAAGTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCTGATAAATTTATGAACGTTTTGAAATCAGCAGAACACTGAAAACACAA</left_flank>
        <right_flank>GAAAAGTTGAGAAAATTTTCATTTTTAAATTGGCCCTAATTTGATTTCTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAGAAATTTAAGAGAGATTCCCATCAAAATCCAAACAAAGTATCATCGAAAAAATAATCTGCGCCGCATCGTCGTTCGTGTTCTCTGTCAACGATAACTAAGCGCGCTAAGGATTAGGAGTATTTTTCACTTCCGAAATTTTACAAAACATGCTTATCTACGTAGTAGTATTAGGCTATTTTATTGTAGGATAAGAACTGTTACGTGGCAGTATCATCCGGTCTGAAATAGTGACCGGGTGGAAAACCGGGAAATATAAAATAGTTGGGACGAATAGTGGAAAAATACCAGATGAGATGTTGGCCGCCTACAGTATCCCGCTATGCCATTTCGAGGACTTCAACAGAAATTAGTTGAATTTCAGAGTGTGAAAAATGAGAATCGCAGAAAAAAAGCTTCATTTTCGAGGTTTTTTTTATTCGTGTTATTCAAAAAATTACAGTAGATCTCTGATAAATTTATGAACGTTTTGAAATCAGCAGAACACTGAAAACACAAGGAAAAGTTGAGAAAATTTTCATTTTTAAATTGGCCCTAATTTGATTTCTAAAATGAATATAATCATGTATTGCTTCTGAGTTTCTCATTTGAGATATGCGCCTTGAACCGAAAATTTCAAAATCTAACAAGGGAAGTGTTTTCGGACACCGGAATTTGTTGAAAATTTGAACAAGTATACTATATGAGTCCCTAAGCATGGTGCCATTTTTAGTTTTCCCCCTCGGCCTCCAGAAGCTGAAAATTTGCGTCTGAAATTTTAACGGGCTTTTAAAGGCCTTTGAGCGCGCCTTCCCTCTTTCTTATATTCATTGAGGAACTAGGAGAAAGCAGCCAGCAGTGGTGTAGTGGTGAGGACTGTCTGACAAGGGTCAGGTTCGATCCCTCTCTCTTGATTTCTCTTTTGTTTTTTTTTAACACTTCTGGAAGTCAAAAAAAAGTTGCATAATTTTTTTATTCAGGTTGCCTTTTTTTTGGAAAATTTTTGCATTGGAAAAAGGC</canonical>
            <polymorphic>GCAGAAATTTAAGAGAGATTCCCATCAAAATCCAAACAAAGTATCATCGAAAAAATAATCTGCGCCGCATCGTCGTTCGTGTTCTCTGTCAACGATAACTAAGCGCGCTAAGGATTAGGAGTATTTTTCACTTCCGAAATTTTACAAAACATGCTTATCTACGTAGTAGTATTAGGCTATTTTATTGTAGGATAAGAACTGTTACGTGGCAGTATCATCCGGTCTGAAATAGTGACCGGGTGGAAAACCGGGAAATATAAAATAGTTGGGACGAATAGTGGAAAAATACCAGATGAGATGTTGGCCGCCTACAGTATCCCGCTATGCCATTTCGAGGACTTCAACAGAAATTAGTTGAATTTCAGAGTGTGAAAAATGAGAATCGCAGAAAAAAAGCTTCATTTTCGAGGTTTTTTTTATTCGTGTTATTCAAAAAATTACAGTAGATCTCTGATAAATTTATGAACGTTTTGAAATCAGCAGAACACTGAAAACACAARGAAAAGTTGAGAAAATTTTCATTTTTAAATTGGCCCTAATTTGATTTCTAAAATGAATATAATCATGTATTGCTTCTGAGTTTCTCATTTGAGATATGCGCCTTGAACCGAAAATTTCAAAATCTAACAAGGGAAGTGTTTTCGGACACCGGAATTTGTTGAAAATTTGAACAAGTATACTATATGAGTCCCTAAGCATGGTGCCATTTTTAGTTTTCCCCCTCGGCCTCCAGAAGCTGAAAATTTGCGTCTGAAATTTTAACGGGCTTTTAAAGGCCTTTGAGCGCGCCTTCCCTCTTTCTTATATTCATTGAGGAACTAGGAGAAAGCAGCCAGCAGTGGTGTAGTGGTGAGGACTGTCTGACAAGGGTCAGGTTCGATCCCTCTCTCTTGATTTCTCTTTTGTTTTTTTTTAACACTTCTGGAAGTCAAAAAAAAGTTGCATAATTTTTTTATTCAGGTTGCCTTTTTTTTGGAAAATTTTTGCATTGGAAAAAGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTAGTTGAATTTCAGAGTGTG</pcr_primer_p1>
		<pcr_primer_p2>AAATGAGAAACTCAGAAGCAATA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAATTAGTTGAATTTCAGAGTGTGAAAAATGAGAATCGCAGAAAAAAAGCTTCATTTTCGAGGTTTTTTTTATTCGTGTTATTCAAAAAATTACAGTAGATCTCTGATAAATTTATGAACGTTTTGAAATCAGCAGAACACTGAAAACACAAGGAAAAGTTGAGAAAATTTTCATTTTTAAATTGGCCCTAATTTGATTTCTAAAATGAATATAATCATGTATTGCTTCTGAGTTTCTCATTT</canonical_amplicon>
		<polymorphic_amplicon>AAATTAGTTGAATTTCAGAGTGTGAAAAATGAGAATCGCAGAAAAAAAGCTTCATTTTCGAGGTTTTTTTTATTCGTGTTATTCAAAAAATTACAGTAGATCTCTGATAAATTTATGAACGTTTTGAAATCAGCAGAACACTGAAAACACAARGAAAAGTTGAGAAAATTTTCATTTTTAAATTGGCCCTAATTTGATTTCTAAAATGAATATAATCATGTATTGCTTCTGAGTTTCTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5367</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>125155</contig_pos>
        <strand>+</strand>
        <context>TTATGGATCA[C/T]AGCCTACGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAAAAGACTGCTGGAAAATTTAAAGGGCTAAGGCTGACATTATGGATCA</left_flank>
        <right_flank>AGCCTACGTTGAAAGGAACCTTCGGAAACCTGAAGCCAAGAGGTAAGATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCCCCAGTACTCATGGTCCCACCGACGTCTTCTGATGCCTTCGACGCCTTCTTTTCCCCTTTCCAATATCTCATTTGTCATATTCAATGTGCCAGTATGCGCAGCGCCATAAGCGCGGCGTACTGCGAAACATGGGCTTACCGATGGGATTACTACCATCTTGAAATGAGAAGAAAAAGGAGGCGAATGTCATCGGACACACATTTTTCGGTGGGAAAGGGAAAGGTCCCCGACAAAAACATTGATAATGACTGGGAGAGGACACGAATATGAGCCTAGGAGCCAAAACATTATTTTTTGGCGGCAGGGAATTCGGTAATGGGATCTTAAGATGGGGATGAAGGATAAGGGAAAAGGATAGGGATGAAGTATGGTCTAGATAATAGAGCCGGAAGGAAAATTGGGATATGTGGATGGGGGATTTAGGGAAAAATTGTATTTTGATTTCGAAAAGACTGCTGGAAAATTTAAAGGGCTAAGGCTGACATTATGGATCATAGCCTACGTTGAAAGGAACCTTCGGAAACCTGAAGCCAAGAGGTAAGATGCCTAGAACATGGTATTATCCAATTCAAAATTCAAGGCTAGTTTATGGCCCAAACTAATAAATTTCAGAGACTGAAATCCTGGAATTCTGAGTTTTAATTTTTGCTCTCCACCGCCTCTTCTTAAAAAAAACTGACGTTAGTTTTTTTTTCAGAATCACTCTATTCCTTGTTTCAAAAATGACTCTTTAATTCAGATCAACCCCCTTCTTCTTTCGCCAAAAACGAGTCAATCCCAGATAATTCTAGATCACTTCAGTCATTTTTCCCCAGTTTTCAGCTCAATCTCTTTCCAATTCCAGCTCATTTACGCAAGCCATAGGTCGTTGTTATCCGTGTCAGTATAAGAAGGTGTGATCTAGAGAATGTGTGTCTGTTTTTACGGAATTAACTGCACACATACTCTTAGGCGATGGGTTTTATTGAAAAAGAGCTCATCTCCAGCTCATTTTT</canonical>
            <polymorphic>GTTCCCCAGTACTCATGGTCCCACCGACGTCTTCTGATGCCTTCGACGCCTTCTTTTCCCCTTTCCAATATCTCATTTGTCATATTCAATGTGCCAGTATGCGCAGCGCCATAAGCGCGGCGTACTGCGAAACATGGGCTTACCGATGGGATTACTACCATCTTGAAATGAGAAGAAAAAGGAGGCGAATGTCATCGGACACACATTTTTCGGTGGGAAAGGGAAAGGTCCCCGACAAAAACATTGATAATGACTGGGAGAGGACACGAATATGAGCCTAGGAGCCAAAACATTATTTTTTGGCGGCAGGGAATTCGGTAATGGGATCTTAAGATGGGGATGAAGGATAAGGGAAAAGGATAGGGATGAAGTATGGTCTAGATAATAGAGCCGGAAGGAAAATTGGGATATGTGGATGGGGGATTTAGGGAAAAATTGTATTTTGATTTCGAAAAGACTGCTGGAAAATTTAAAGGGCTAAGGCTGACATTATGGATCAYAGCCTACGTTGAAAGGAACCTTCGGAAACCTGAAGCCAAGAGGTAAGATGCCTAGAACATGGTATTATCCAATTCAAAATTCAAGGCTAGTTTATGGCCCAAACTAATAAATTTCAGAGACTGAAATCCTGGAATTCTGAGTTTTAATTTTTGCTCTCCACCGCCTCTTCTTAAAAAAAACTGACGTTAGTTTTTTTTTCAGAATCACTCTATTCCTTGTTTCAAAAATGACTCTTTAATTCAGATCAACCCCCTTCTTCTTTCGCCAAAAACGAGTCAATCCCAGATAATTCTAGATCACTTCAGTCATTTTTCCCCAGTTTTCAGCTCAATCTCTTTCCAATTCCAGCTCATTTACGCAAGCCATAGGTCGTTGTTATCCGTGTCAGTATAAGAAGGTGTGATCTAGAGAATGTGTGTCTGTTTTTACGGAATTAACTGCACACATACTCTTAGGCGATGGGTTTTATTGAAAAAGAGCTCATCTCCAGCTCATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGGATAAGGGAAAAGGATAG</pcr_primer_p1>
		<pcr_primer_p2>ACTAGCCTTGAATTTTGAATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGGATAAGGGAAAAGGATAGGGATGAAGTATGGTCTAGATAATAGAGCCGGAAGGAAAATTGGGATATGTGGATGGGGGATTTAGGGAAAAATTGTATTTTGATTTCGAAAAGACTGCTGGAAAATTTAAAGGGCTAAGGCTGACATTATGGATCATAGCCTACGTTGAAAGGAACCTTCGGAAACCTGAAGCCAAGAGGTAAGATGCCTAGAACATGGTATTATCCAATTCAAAATTCAAGGCTAGT</canonical_amplicon>
		<polymorphic_amplicon>GAAGGATAAGGGAAAAGGATAGGGATGAAGTATGGTCTAGATAATAGAGCCGGAAGGAAAATTGGGATATGTGGATGGGGGATTTAGGGAAAAATTGTATTTTGATTTCGAAAAGACTGCTGGAAAATTTAAAGGGCTAAGGCTGACATTATGGATCAYAGCCTACGTTGAAAGGAACCTTCGGAAACCTGAAGCCAAGAGGTAAGATGCCTAGAACATGGTATTATCCAATTCAAAATTCAAGGCTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5368</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>125038</contig_pos>
        <strand>+</strand>
        <context>ATGGTCTAGA[G/T]AATAGAGCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATGGGGATGAAGGATAAGGGAAAAGGATAGGGATGAAGTATGGTCTAGA</left_flank>
        <right_flank>AATAGAGCCGGAAGGAAAATTGGGATATGTGGATGGGGGATTTAGGGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCACCAAAAATGCATCAGAAAGTTGAAGCAAATGAGGTCCTTCTCTCGTTTTTGTCTTCGATAGTAGGCTCCATGAGTCGTAACCGAAAAAGGCCACAAAAGGATTAAGCGCGCGGTTCCCCAGTACTCATGGTCCCACCGACGTCTTCTGATGCCTTCGACGCCTTCTTTTCCCCTTTCCAATATCTCATTTGTCATATTCAATGTGCCAGTATGCGCAGCGCCATAAGCGCGGCGTACTGCGAAACATGGGCTTACCGATGGGATTACTACCATCTTGAAATGAGAAGAAAAAGGAGGCGAATGTCATCGGACACACATTTTTCGGTGGGAAAGGGAAAGGTCCCCGACAAAAACATTGATAATGACTGGGAGAGGACACGAATATGAGCCTAGGAGCCAAAACATTATTTTTTGGCGGCAGGGAATTCGGTAATGGGATCTTAAGATGGGGATGAAGGATAAGGGAAAAGGATAGGGATGAAGTATGGTCTAGATAATAGAGCCGGAAGGAAAATTGGGATATGTGGATGGGGGATTTAGGGAAAAATTGTATTTTGATTTCGAAAAGACTGCTGGAAAATTTAAAGGGCTAAGGCTGACATTATGGATCATAGCCTACGTTGAAAGGAACCTTCGGAAACCTGAAGCCAAGAGGTAAGATGCCTAGAACATGGTATTATCCAATTCAAAATTCAAGGCTAGTTTATGGCCCAAACTAATAAATTTCAGAGACTGAAATCCTGGAATTCTGAGTTTTAATTTTTGCTCTCCACCGCCTCTTCTTAAAAAAAACTGACGTTAGTTTTTTTTTCAGAATCACTCTATTCCTTGTTTCAAAAATGACTCTTTAATTCAGATCAACCCCCTTCTTCTTTCGCCAAAAACGAGTCAATCCCAGATAATTCTAGATCACTTCAGTCATTTTTCCCCAGTTTTCAGCTCAATCTCTTTCCAATTCCAGCTCATTTACGCAAGCCATAGGTCGTTGTTATCCG</canonical>
            <polymorphic>TGTCACCAAAAATGCATCAGAAAGTTGAAGCAAATGAGGTCCTTCTCTCGTTTTTGTCTTCGATAGTAGGCTCCATGAGTCGTAACCGAAAAAGGCCACAAAAGGATTAAGCGCGCGGTTCCCCAGTACTCATGGTCCCACCGACGTCTTCTGATGCCTTCGACGCCTTCTTTTCCCCTTTCCAATATCTCATTTGTCATATTCAATGTGCCAGTATGCGCAGCGCCATAAGCGCGGCGTACTGCGAAACATGGGCTTACCGATGGGATTACTACCATCTTGAAATGAGAAGAAAAAGGAGGCGAATGTCATCGGACACACATTTTTCGGTGGGAAAGGGAAAGGTCCCCGACAAAAACATTGATAATGACTGGGAGAGGACACGAATATGAGCCTAGGAGCCAAAACATTATTTTTTGGCGGCAGGGAATTCGGTAATGGGATCTTAAGATGGGGATGAAGGATAAGGGAAAAGGATAGGGATGAAGTATGGTCTAGAKAATAGAGCCGGAAGGAAAATTGGGATATGTGGATGGGGGATTTAGGGAAAAATTGTATTTTGATTTCGAAAAGACTGCTGGAAAATTTAAAGGGCTAAGGCTGACATTATGGATCATAGCCTACGTTGAAAGGAACCTTCGGAAACCTGAAGCCAAGAGGTAAGATGCCTAGAACATGGTATTATCCAATTCAAAATTCAAGGCTAGTTTATGGCCCAAACTAATAAATTTCAGAGACTGAAATCCTGGAATTCTGAGTTTTAATTTTTGCTCTCCACCGCCTCTTCTTAAAAAAAACTGACGTTAGTTTTTTTTTCAGAATCACTCTATTCCTTGTTTCAAAAATGACTCTTTAATTCAGATCAACCCCCTTCTTCTTTCGCCAAAAACGAGTCAATCCCAGATAATTCTAGATCACTTCAGTCATTTTTCCCCAGTTTTCAGCTCAATCTCTTTCCAATTCCAGCTCATTTACGCAAGCCATAGGTCGTTGTTATCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTCGGTAATGGGATCTTA</pcr_primer_p1>
		<pcr_primer_p2>ATGTTCTAGGCATCTTACCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATTCGGTAATGGGATCTTAAGATGGGGATGAAGGATAAGGGAAAAGGATAGGGATGAAGTATGGTCTAGATAATAGAGCCGGAAGGAAAATTGGGATATGTGGATGGGGGATTTAGGGAAAAATTGTATTTTGATTTCGAAAAGACTGCTGGAAAATTTAAAGGGCTAAGGCTGACATTATGGATCATAGCCTACGTTGAAAGGAACCTTCGGAAACCTGAAGCCAAGAGGTAAGATGCCTAGAACAT</canonical_amplicon>
		<polymorphic_amplicon>GAATTCGGTAATGGGATCTTAAGATGGGGATGAAGGATAAGGGAAAAGGATAGGGATGAAGTATGGTCTAGAKAATAGAGCCGGAAGGAAAATTGGGATATGTGGATGGGGGATTTAGGGAAAAATTGTATTTTGATTTCGAAAAGACTGCTGGAAAATTTAAAGGGCTAAGGCTGACATTATGGATCATAGCCTACGTTGAAAGGAACCTTCGGAAACCTGAAGCCAAGAGGTAAGATGCCTAGAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5396</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>147833</contig_pos>
        <strand></strand>
        <context>awatctgaaa[G/A]tgattttcGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAA</left_flank>
        <right_flank>TGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCATTTTTTGTAGTTGACAACTTTTTGATTCAAACTCATCCTTGAAATCTTGAAATTATAAGGGTCGAGATCAAAGAAATTACAACTAGAAATAAATAGAAAATTGAGTAATTACAGGCACATTTTTGATGCCATAAGGACAGTACCGGACGAAAAATATAGACATGTTTGAACTTTTTCAATAGAACAACTATGAAATCCTGAAAAAGTAATTTATAATGTTTTGATTTGTCTGAAAATGTTTGAGCATACTAAACTAAAATAGAGCTTTAGTTTGGAATTCACAACATTCTTGTAGGAAATCAGCAATGCAAGATAAATGGTTTCAAAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTCTGATGATTTCCAAAGATATGTGCATACTCTCTTTTTATT</canonical>
            <polymorphic>CTCCATTTTTTGTAGTTGACAACTTTTTGATTCAAACTCATCCTTGAAATCTTGAAATTATAAGGGTCGAGATCAAAGAAATTACAACTAGAAATAAATAGAAAATTGAGTAATTACAGGCACATTTTTGATGCCATAAGGACAGTACCGGACGAAAAATATAGACATGTTTGAACTTTTTCAATAGAACAACTATGAAATCCTGAAAAAGTAATTTATAATGTTTTGATTTGTCTGAAAATGTTTGAGCATACTAAACTAAAATAGAGCTTTAGTTTGGAATTCACAACATTCTTGTAGGAAATCAGCAATGCAAGATAAATGGTTTCAAAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAARTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTCTGATGATTTCCAAAGATATGTGCATACTCTCTTTTTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>164 127 122 116 97 69 65 57 53 28 25 20 18 17 13 9</canonical_bands>
                <polymorphic_bands>164 127 125 122 97 69 65 57 53 28 25 20 18 17 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCAATAGAACAACTATGAAATC</pcr_primer_p1>
		<pcr_primer_p2>GAACGGTATGATATTTTGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>389</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCAATAGAACAACTATGAAATCCTGAAAAAGTAATTTATAATGTTTTGATTTGTCTGAAAATGTTTGAGCATACTAAACTAAAATAGAGCTTTAGTTTGGAATTCACAACATTCTTGTAGGAAATCAGCAATGCAAGATAAATGGTTTCAAAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCAATAGAACAACTATGAAATCCTGAAAAAGTAATTTATAATGTTTTGATTTGTCTGAAAATGTTTGAGCATACTAAACTAAAATAGAGCTTTAGTTTGGAATTCACAACATTCTTGTAGGAAATCAGCAATGCAAGATAAATGGTTTCAAAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAARTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5397</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>147920</contig_pos>
        <strand>+</strand>
        <context>GTACATCTTT[G/T]CATAACGCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTT</left_flank>
        <right_flank>CATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAA</right_flank>
        <qual_score>145</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAGAAATAAATAGAAAATTGAGTAATTACAGGCACATTTTTGATGCCATAAGGACAGTACCGGACGAAAAATATAGACATGTTTGAACTTTTTCAATAGAACAACTATGAAATCCTGAAAAAGTAATTTATAATGTTTTGATTTGTCTGAAAATGTTTGAGCATACTAAACTAAAATAGAGCTTTAGTTTGGAATTCACAACATTCTTGTAGGAAATCAGCAATGCAAGATAAATGGTTTCAAAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTCTGATGATTTCCAAAGATATGTGCATACTCTCTTTTTATTATTCTTGCTCTGTCAGATCATCAATTATCTAATAAAGTTCATTAACTCATCGGCATCTTCTTTTTTCAATGTCTCCATCGAACTCCC</canonical>
            <polymorphic>CTAGAAATAAATAGAAAATTGAGTAATTACAGGCACATTTTTGATGCCATAAGGACAGTACCGGACGAAAAATATAGACATGTTTGAACTTTTTCAATAGAACAACTATGAAATCCTGAAAAAGTAATTTATAATGTTTTGATTTGTCTGAAAATGTTTGAGCATACTAAACTAAAATAGAGCTTTAGTTTGGAATTCACAACATTCTTGTAGGAAATCAGCAATGCAAGATAAATGGTTTCAAAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTKCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTCTGATGATTTCCAAAGATATGTGCATACTCTCTTTTTATTATTCTTGCTCTGTCAGATCATCAATTATCTAATAAAGTTCATTAACTCATCGGCATCTTCTTTTTTCAATGTCTCCATCGAACTCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>274 226 215 162 104 19</canonical_bands>
                <polymorphic_bands>436 226 215 104 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGAATCTGACTATTTTATCACTG</pcr_primer_p1>
		<pcr_primer_p2>GATAATTGTATTCGAATTTTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>392</pcr_amplicon_size>
		<canonical_amplicon>TGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATC</canonical_amplicon>
		<polymorphic_amplicon>TGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTKCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5398</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>148162</contig_pos>
        <strand></strand>
        <context>YGAGCAAGTG[C/T]YGTATCGTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTG</left_flank>
        <right_flank>GGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTCTGATGATTTCCAAAGATATGTGCATACTCTCTTTTTATTATTCTTGCTCTGTCAGATCATCAATTATCTAATAAAGTTCATTAACTCATCGGCATCTTCTTTTTTCAATGTCTCCATCGAACTCCCATACCCCATTTTCCATCCATCAATCAATCGAGATATTCCTGCGCAGAAAAAGACAACAGTTGCTCTGTGTCTGAGGAGCGGCTCCCTTTTGAGCTCTCATTTAAATGACCAATTGAAGTTTCGCCGAGTTTATAAACTGAGAAAAGGGAAGAAGAGGAAAATGAGTCAACACGTGTTGGGCACCCGATAATTTATATGCATGGCACTAGGTCTCTGTCTGTCAGGAATAAAAAGTAAGGGAA</canonical>
            <polymorphic>AAAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGYGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTCTGATGATTTCCAAAGATATGTGCATACTCTCTTTTTATTATTCTTGCTCTGTCAGATCATCAATTATCTAATAAAGTTCATTAACTCATCGGCATCTTCTTTTTTCAATGTCTCCATCGAACTCCCATACCCCATTTTCCATCCATCAATCAATCGAGATATTCCTGCGCAGAAAAAGACAACAGTTGCTCTGTGTCTGAGGAGCGGCTCCCTTTTGAGCTCTCATTTAAATGACCAATTGAAGTTTCGCCGAGTTTATAAACTGAGAAAAGGGAAGAAGAGGAAAATGAGTCAACACGTGTTGGGCACCCGATAATTTATATGCATGGCACTAGGTCTCTGTCTGTCAGGAATAAAAAGTAAGGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTCCGGTATTGTACATCTTT</pcr_primer_p1>
		<pcr_primer_p2>GATAATTGTATTCGAATTTTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>CTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATC</canonical_amplicon>
		<polymorphic_amplicon>CTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGYGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5399</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>148202</contig_pos>
        <strand>+</strand>
        <context>GTAAATAAAA[C/T]AACTGAACGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAA</left_flank>
        <right_flank>AACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTG</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTCTGATGATTTCCAAAGATATGTGCATACTCTCTTTTTATTATTCTTGCTCTGTCAGATCATCAATTATCTAATAAAGTTCATTAACTCATCGGCATCTTCTTTTTTCAATGTCTCCATCGAACTCCCATACCCCATTTTCCATCCATCAATCAATCGAGATATTCCTGCGCAGAAAAAGACAACAGTTGCTCTGTGTCTGAGGAGCGGCTCCCTTTTGAGCTCTCATTTAAATGACCAATTGAAGTTTCGCCGAGTTTATAAACTGAGAAAAGGGAAGAAGAGGAAAATGAGTCAACACGTGTTGGGCACCCGATAATTTATATGCATGGCACTAGGTCTCTGTCTGTCAGGAATAAAAAGTAAGGGAACGAAAACTTCAGGGACATCAGGGGGTTCCCAGAGTTTGTG</canonical>
            <polymorphic>TTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAAYAACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTCTGATGATTTCCAAAGATATGTGCATACTCTCTTTTTATTATTCTTGCTCTGTCAGATCATCAATTATCTAATAAAGTTCATTAACTCATCGGCATCTTCTTTTTTCAATGTCTCCATCGAACTCCCATACCCCATTTTCCATCCATCAATCAATCGAGATATTCCTGCGCAGAAAAAGACAACAGTTGCTCTGTGTCTGAGGAGCGGCTCCCTTTTGAGCTCTCATTTAAATGACCAATTGAAGTTTCGCCGAGTTTATAAACTGAGAAAAGGGAAGAAGAGGAAAATGAGTCAACACGTGTTGGGCACCCGATAATTTATATGCATGGCACTAGGTCTCTGTCTGTCAGGAATAAAAAGTAAGGGAACGAAAACTTCAGGGACATCAGGGGGTTCCCAGAGTTTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTCCGGTATTGTACATCTTT</pcr_primer_p1>
		<pcr_primer_p2>CCGTAATCTCAAATGTCTTAATG</pcr_primer_p2>
		<pcr_amplicon_size>364</pcr_amplicon_size>
		<canonical_amplicon>CTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGG</canonical_amplicon>
		<polymorphic_amplicon>CTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAAYAACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5400</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>150577</contig_pos>
        <strand>+</strand>
        <context>TGTGCTCAAA[C/T]GAGAAGATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGATTTTCGGAATCCAATTTCTTCTGGACCCCATTTTCTCTGTGCTCAAA</left_flank>
        <right_flank>GAGAAGATTTACGGGAGCTTCAACGCTAGAAATCAGAAAAAATTTGCATT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGCCTGGAATTTATAATTAAAGTCACCGTCTGCTGTTGCTGCCCGCTCTTTTTCCTTGTCTTCTAGCTTTTCTTATTCTCTTCATTTCTATTTCCAATTTCCCCCTAACACCATTTTCCATTCTGAACGAAAGCTCTCATTTCATTAAAAAAGGGAGCGGAAAGAAGGCTCATTTAACTCGTAAAACCCTTTTCTGGACATCGTTTTTTCTCTCTTCTATCCTCTTTTCTTGCTCAATCCAAAGTGCTCCAAAACGGAGCCACGAAGCCTTTCTCAGAGTGTCTCAGTCTCCTCCAAACACGCCATCTCATATCGATTTCTCTGCGGCTCTTTCTTTTCTTTCCAAACAAAGTCAGAAGGGGTCCCCCGAAAAAGAAGAGGACCACAACTCCATTCTCCTATTTTTCGAAATTGTGTAAACCACAACATGTCCTTTTTCTTTTCTTAAGATTTTCGGAATCCAATTTCTTCTGGACCCCATTTTCTCTGTGCTCAAACGAGAAGATTTACGGGAGCTTCAACGCTAGAAATCAGAAAAAATTTGCATTCCATTTTCAATTTCCATTTCGTAAAACTCAATTCAATTCATCTGAATTCGTAAACGATGGAATTAATGGAGCGCCCCTCCTCTCGTTTCGTCGACGTTTTCAATATTTGCTCCGATGTCGTTTTCTTTTTTGGCCTTCTTTTTCCTCTGGGGACAGAACCATTGGATGTTAGTTGTGGCTTCAGTTGCGAAATCGTCATATGTTGGCTCATTTTATCGGTTTGACGTAGTTATTCCAGAATAACTCCTCTTTGCGTTTTGCGAAGGAGAAAGTTAGTTTTGAACTGGAAGTTTGAAATTCATGAATATTAAAAGGCTTTTCTTTGTGAAAGTTTGATTGCTTTTGAGTGGTTGTTTTTTAAATGTGATGTGAAATTCCTATTGCTTAATTTTGTAAAAAAATTTCAGTATTGGTTTTCAGTTGATTTTCTGCATTTTCAGGAGTCTGGAG</canonical>
            <polymorphic>AATGCCTGGAATTTATAATTAAAGTCACCGTCTGCTGTTGCTGCCCGCTCTTTTTCCTTGTCTTCTAGCTTTTCTTATTCTCTTCATTTCTATTTCCAATTTCCCCCTAACACCATTTTCCATTCTGAACGAAAGCTCTCATTTCATTAAAAAAGGGAGCGGAAAGAAGGCTCATTTAACTCGTAAAACCCTTTTCTGGACATCGTTTTTTCTCTCTTCTATCCTCTTTTCTTGCTCAATCCAAAGTGCTCCAAAACGGAGCCACGAAGCCTTTCTCAGAGTGTCTCAGTCTCCTCCAAACACGCCATCTCATATCGATTTCTCTGCGGCTCTTTCTTTTCTTTCCAAACAAAGTCAGAAGGGGTCCCCCGAAAAAGAAGAGGACCACAACTCCATTCTCCTATTTTTCGAAATTGTGTAAACCACAACATGTCCTTTTTCTTTTCTTAAGATTTTCGGAATCCAATTTCTTCTGGACCCCATTTTCTCTGTGCTCAAAYGAGAAGATTTACGGGAGCTTCAACGCTAGAAATCAGAAAAAATTTGCATTCCATTTTCAATTTCCATTTCGTAAAACTCAATTCAATTCATCTGAATTCGTAAACGATGGAATTAATGGAGCGCCCCTCCTCTCGTTTCGTCGACGTTTTCAATATTTGCTCCGATGTCGTTTTCTTTTTTGGCCTTCTTTTTCCTCTGGGGACAGAACCATTGGATGTTAGTTGTGGCTTCAGTTGCGAAATCGTCATATGTTGGCTCATTTTATCGGTTTGACGTAGTTATTCCAGAATAACTCCTCTTTGCGTTTTGCGAAGGAGAAAGTTAGTTTTGAACTGGAAGTTTGAAATTCATGAATATTAAAAGGCTTTTCTTTGTGAAAGTTTGATTGCTTTTGAGTGGTTGTTTTTTAAATGTGATGTGAAATTCCTATTGCTTAATTTTGTAAAAAAATTTCAGTATTGGTTTTCAGTTGATTTTCTGCATTTTCAGGAGTCTGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTCCAAACAAAGTCAGAAG</pcr_primer_p1>
		<pcr_primer_p2>ATTGAATTGAGTTTTACGAAATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTTTCCAAACAAAGTCAGAAGGGGTCCCCCGAAAAAGAAGAGGACCACAACTCCATTCTCCTATTTTTCGAAATTGTGTAAACCACAACATGTCCTTTTTCTTTTCTTAAGATTTTCGGAATCCAATTTCTTCTGGACCCCATTTTCTCTGTGCTCAAACGAGAAGATTTACGGGAGCTTCAACGCTAGAAATCAGAAAAAATTTGCATTCCATTTTCAATTTCCATTTCGTAAAACTCAATTCAAT</canonical_amplicon>
		<polymorphic_amplicon>TCTTTCCAAACAAAGTCAGAAGGGGTCCCCCGAAAAAGAAGAGGACCACAACTCCATTCTCCTATTTTTCGAAATTGTGTAAACCACAACATGTCCTTTTTCTTTTCTTAAGATTTTCGGAATCCAATTTCTTCTGGACCCCATTTTCTCTGTGCTCAAAYGAGAAGATTTACGGGAGCTTCAACGCTAGAAATCAGAAAAAATTTGCATTCCATTTTCAATTTCCATTTCGTAAAACTCAATTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5401</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>150499</contig_pos>
        <strand>+</strand>
        <context>AATTGTGTAA[A/G]CCACAACATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAGAAGAGGACCACAACTCCATTCTCCTATTTTTCGAAATTGTGTAA</left_flank>
        <right_flank>CCACAACATGTCCTTTTTCTTTTCTTAAGATTTTCGGAATCCAATTTCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTACGTATGAACTTATAGAATTCTATCATCGTCATGTTCTTTATCTTCAACTGATGCGCTGTTGACTGGTCGATTGGAATGCCTGGAATTTATAATTAAAGTCACCGTCTGCTGTTGCTGCCCGCTCTTTTTCCTTGTCTTCTAGCTTTTCTTATTCTCTTCATTTCTATTTCCAATTTCCCCCTAACACCATTTTCCATTCTGAACGAAAGCTCTCATTTCATTAAAAAAGGGAGCGGAAAGAAGGCTCATTTAACTCGTAAAACCCTTTTCTGGACATCGTTTTTTCTCTCTTCTATCCTCTTTTCTTGCTCAATCCAAAGTGCTCCAAAACGGAGCCACGAAGCCTTTCTCAGAGTGTCTCAGTCTCCTCCAAACACGCCATCTCATATCGATTTCTCTGCGGCTCTTTCTTTTCTTTCCAAACAAAGTCAGAAGGGGTCCCCCGAAAAAGAAGAGGACCACAACTCCATTCTCCTATTTTTCGAAATTGTGTAAACCACAACATGTCCTTTTTCTTTTCTTAAGATTTTCGGAATCCAATTTCTTCTGGACCCCATTTTCTCTGTGCTCAAACGAGAAGATTTACGGGAGCTTCAACGCTAGAAATCAGAAAAAATTTGCATTCCATTTTCAATTTCCATTTCGTAAAACTCAATTCAATTCATCTGAATTCGTAAACGATGGAATTAATGGAGCGCCCCTCCTCTCGTTTCGTCGACGTTTTCAATATTTGCTCCGATGTCGTTTTCTTTTTTGGCCTTCTTTTTCCTCTGGGGACAGAACCATTGGATGTTAGTTGTGGCTTCAGTTGCGAAATCGTCATATGTTGGCTCATTTTATCGGTTTGACGTAGTTATTCCAGAATAACTCCTCTTTGCGTTTTGCGAAGGAGAAAGTTAGTTTTGAACTGGAAGTTTGAAATTCATGAATATTAAAAGGCTTTTCTTTGTGAAAGTTTGATTGCTTTTGAGTGGTTGTTTTTTAAATGTGATGTGA</canonical>
            <polymorphic>ATTACGTATGAACTTATAGAATTCTATCATCGTCATGTTCTTTATCTTCAACTGATGCGCTGTTGACTGGTCGATTGGAATGCCTGGAATTTATAATTAAAGTCACCGTCTGCTGTTGCTGCCCGCTCTTTTTCCTTGTCTTCTAGCTTTTCTTATTCTCTTCATTTCTATTTCCAATTTCCCCCTAACACCATTTTCCATTCTGAACGAAAGCTCTCATTTCATTAAAAAAGGGAGCGGAAAGAAGGCTCATTTAACTCGTAAAACCCTTTTCTGGACATCGTTTTTTCTCTCTTCTATCCTCTTTTCTTGCTCAATCCAAAGTGCTCCAAAACGGAGCCACGAAGCCTTTCTCAGAGTGTCTCAGTCTCCTCCAAACACGCCATCTCATATCGATTTCTCTGCGGCTCTTTCTTTTCTTTCCAAACAAAGTCAGAAGGGGTCCCCCGAAAAAGAAGAGGACCACAACTCCATTCTCCTATTTTTCGAAATTGTGTAARCCACAACATGTCCTTTTTCTTTTCTTAAGATTTTCGGAATCCAATTTCTTCTGGACCCCATTTTCTCTGTGCTCAAACGAGAAGATTTACGGGAGCTTCAACGCTAGAAATCAGAAAAAATTTGCATTCCATTTTCAATTTCCATTTCGTAAAACTCAATTCAATTCATCTGAATTCGTAAACGATGGAATTAATGGAGCGCCCCTCCTCTCGTTTCGTCGACGTTTTCAATATTTGCTCCGATGTCGTTTTCTTTTTTGGCCTTCTTTTTCCTCTGGGGACAGAACCATTGGATGTTAGTTGTGGCTTCAGTTGCGAAATCGTCATATGTTGGCTCATTTTATCGGTTTGACGTAGTTATTCCAGAATAACTCCTCTTTGCGTTTTGCGAAGGAGAAAGTTAGTTTTGAACTGGAAGTTTGAAATTCATGAATATTAAAAGGCTTTTCTTTGTGAAAGTTTGATTGCTTTTGAGTGGTTGTTTTTTAAATGTGATGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>434 280 182 64 40</canonical_bands>
                <polymorphic_bands>616 280 64 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTCCAAACAAAGTCAGAAG</pcr_primer_p1>
		<pcr_primer_p2>ATTGAATTGAGTTTTACGAAATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTTTCCAAACAAAGTCAGAAGGGGTCCCCCGAAAAAGAAGAGGACCACAACTCCATTCTCCTATTTTTCGAAATTGTGTAAACCACAACATGTCCTTTTTCTTTTCTTAAGATTTTCGGAATCCAATTTCTTCTGGACCCCATTTTCTCTGTGCTCAAACGAGAAGATTTACGGGAGCTTCAACGCTAGAAATCAGAAAAAATTTGCATTCCATTTTCAATTTCCATTTCGTAAAACTCAATTCAAT</canonical_amplicon>
		<polymorphic_amplicon>TCTTTCCAAACAAAGTCAGAAGGGGTCCCCCGAAAAAGAAGAGGACCACAACTCCATTCTCCTATTTTTCGAAATTGTGTAARCCACAACATGTCCTTTTTCTTTTCTTAAGATTTTCGGAATCCAATTTCTTCTGGACCCCATTTTCTCTGTGCTCAAACGAGAAGATTTACGGGAGCTTCAACGCTAGAAATCAGAAAAAATTTGCATTCCATTTTCAATTTCCATTTCGTAAAACTCAATTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5402</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>159615</contig_pos>
        <strand>+</strand>
        <context>ATTTTTTCGC[A/C]ACTTCAATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATTCTATACATACAACCCTGGGACGCATTCTTCTTTTCAATTTTTTCGC</left_flank>
        <right_flank>ACTTCAATTTTTTACAAAAGAATGTCTGTTCAATAGACACTTTCTCTCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCAGAAATCCTATTTTCCCGGTATTTAAGGATCAGATCCATCTAAAAAACTAACCTTCTAAACAATTCGTCTGCGGATTATCCACATAATCCAATCTCCCCCTTCCCACTGGTCAACAAAAATTGTATACTTTCGATTTTACCTAGAGGGACAATGGTTTATGATCCCTTTGGTCGTATACTTTATGCCAATATGTATACAAATTCAATTTTAAAACAATTTCAAAATTGAATAGTATTCAAAAACCTTATTTGTTTGTTTACCCATACAACTCAACAAGATTTCTACCACAAAATCCAAAAATCCCAAAAAGCCCAAAGTTTTCCCACGAAATCCGAGTGGTCAAGTTGTTGCACTTCCTGTCCATTCGCCCATTTTCTCCCCTTCTCTCTACGTATATATAATAACAATAATAGCACGGCTGAATGCGTGCCAGAAGAATTCTCTTATTCTATACATACAACCCTGGGACGCATTCTTCTTTTCAATTTTTTCGCCACTTCAATTTTTTACAAAAGAATGTCTGTTCAATAGACACTTTCTCTCTTATCCTGTCTTCTTCCAAAACTTATCTTTTATCCGTTTTTATTCCGGTCATGTTGTAAAGTGTGTGTTTTGTCATGCCCCTTGGAGCTCACACGGGGGCTCTCCAACCTCCCCGAGCACTTTTTCTCTCTTTACCTGATATCTCTCTTGCTTCAGAAGATTTCTTTAAAAACACCTGGCGCGTCTCTTTTTGCATCAATAGTAGTTATTAGAATAGTTTTGTGGCTTAATTCTTTAAATCCGTTGTATAAGATTCAAAAGAATATTCTTCCAGTTCTCGAACGGGTCCTGGAGTGATATTGGCGAATCGATGATCACCTCGAATTGCACTTTCACTGTTCGAAAAGGAGTGAGTTTAAAAATTCAAATCTTCAAAAAAATGAAAATGTTCCAGCCGCCATTACCAATGGACGATGATACGGATCTGATGAGTGTTCCGATGGTTCAATCAG</canonical>
            <polymorphic>AACCAGAAATCCTATTTTCCCGGTATTTAAGGATCAGATCCATCTAAAAAACTAACCTTCTAAACAATTCGTCTGCGGATTATCCACATAATCCAATCTCCCCCTTCCCACTGGTCAACAAAAATTGTATACTTTCGATTTTACCTAGAGGGACAATGGTTTATGATCCCTTTGGTCGTATACTTTATGCCAATATGTATACAAATTCAATTTTAAAACAATTTCAAAATTGAATAGTATTCAAAAACCTTATTTGTTTGTTTACCCATACAACTCAACAAGATTTCTACCACAAAATCCAAAAATCCCAAAAAGCCCAAAGTTTTCCCACGAAATCCGAGTGGTCAAGTTGTTGCACTTCCTGTCCATTCGCCCATTTTCTCCCCTTCTCTCTACGTATATATAATAACAATAATAGCACGGCTGAATGCGTGCCAGAAGAATTCTCTTATTCTATACATACAACCCTGGGACGCATTCTTCTTTTCAATTTTTTCGCMACTTCAATTTTTTACAAAAGAATGTCTGTTCAATAGACACTTTCTCTCTTATCCTGTCTTCTTCCAAAACTTATCTTTTATCCGTTTTTATTCCGGTCATGTTGTAAAGTGTGTGTTTTGTCATGCCCCTTGGAGCTCACACGGGGGCTCTCCAACCTCCCCGAGCACTTTTTCTCTCTTTACCTGATATCTCTCTTGCTTCAGAAGATTTCTTTAAAAACACCTGGCGCGTCTCTTTTTGCATCAATAGTAGTTATTAGAATAGTTTTGTGGCTTAATTCTTTAAATCCGTTGTATAAGATTCAAAAGAATATTCTTCCAGTTCTCGAACGGGTCCTGGAGTGATATTGGCGAATCGATGATCACCTCGAATTGCACTTTCACTGTTCGAAAAGGAGTGAGTTTAAAAATTCAAATCTTCAAAAAAATGAAAATGTTCCAGCCGCCATTACCAATGGACGATGATACGGATCTGATGAGTGTTCCGATGGTTCAATCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>182 86 82 72 72 67 63 55 50 38 38 26 24 24 21 18 17 14 14 13 12 6 2 2 2</canonical_bands>
                <polymorphic_bands>182 105 86 82 72 72 63 55 50 38 26 24 24 21 18 17 14 14 13 12 6 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTTTCTCCCCTTCTCTCTAC</pcr_primer_p1>
		<pcr_primer_p2>TGACAAAACACACACTTTACAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATTTTCTCCCCTTCTCTCTACGTATATATAATAACAATAATAGCACGGCTGAATGCGTGCCAGAAGAATTCTCTTATTCTATACATACAACCCTGGGACGCATTCTTCTTTTCAATTTTTTCGCCACTTCAATTTTTTACAAAAGAATGTCTGTTCAATAGACACTTTCTCTCTTATCCTGTCTTCTTCCAAAACTTATCTTTTATCCGTTTTTATTCCGGTCATGTTGTAAAGTGTGTGTTTTGTCA</canonical_amplicon>
		<polymorphic_amplicon>CATTTTCTCCCCTTCTCTCTACGTATATATAATAACAATAATAGCACGGCTGAATGCGTGCCAGAAGAATTCTCTTATTCTATACATACAACCCTGGGACGCATTCTTCTTTTCAATTTTTTCGCMACTTCAATTTTTTACAAAAGAATGTCTGTTCAATAGACACTTTCTCTCTTATCCTGTCTTCTTCCAAAACTTATCTTTTATCCGTTTTTATTCCGGTCATGTTGTAAAGTGTGTGTTTTGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5403</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>159685</contig_pos>
        <strand>+</strand>
        <context>TCTTCCAAAA[A/C]TTATCTTTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAATGTCTGTTCAATAGACACTTTCTCTCTTATCCTGTCTTCTTCCAAAA</left_flank>
        <right_flank>TTATCTTTTATCCGTTTTTATTCCGGTCATGTTGTAAAGTGTGTGTTTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTGCGGATTATCCACATAATCCAATCTCCCCCTTCCCACTGGTCAACAAAAATTGTATACTTTCGATTTTACCTAGAGGGACAATGGTTTATGATCCCTTTGGTCGTATACTTTATGCCAATATGTATACAAATTCAATTTTAAAACAATTTCAAAATTGAATAGTATTCAAAAACCTTATTTGTTTGTTTACCCATACAACTCAACAAGATTTCTACCACAAAATCCAAAAATCCCAAAAAGCCCAAAGTTTTCCCACGAAATCCGAGTGGTCAAGTTGTTGCACTTCCTGTCCATTCGCCCATTTTCTCCCCTTCTCTCTACGTATATATAATAACAATAATAGCACGGCTGAATGCGTGCCAGAAGAATTCTCTTATTCTATACATACAACCCTGGGACGCATTCTTCTTTTCAATTTTTTCGCCACTTCAATTTTTTACAAAAGAATGTCTGTTCAATAGACACTTTCTCTCTTATCCTGTCTTCTTCCAAAACTTATCTTTTATCCGTTTTTATTCCGGTCATGTTGTAAAGTGTGTGTTTTGTCATGCCCCTTGGAGCTCACACGGGGGCTCTCCAACCTCCCCGAGCACTTTTTCTCTCTTTACCTGATATCTCTCTTGCTTCAGAAGATTTCTTTAAAAACACCTGGCGCGTCTCTTTTTGCATCAATAGTAGTTATTAGAATAGTTTTGTGGCTTAATTCTTTAAATCCGTTGTATAAGATTCAAAAGAATATTCTTCCAGTTCTCGAACGGGTCCTGGAGTGATATTGGCGAATCGATGATCACCTCGAATTGCACTTTCACTGTTCGAAAAGGAGTGAGTTTAAAAATTCAAATCTTCAAAAAAATGAAAATGTTCCAGCCGCCATTACCAATGGACGATGATACGGATCTGATGAGTGTTCCGATGGTTCAATCAGTGTTCAATATTGATAGAGAGGCATTGCGAAGGGAAGAGCAGTGTGAGTTTTTGAAATTACTTTAAGGCCT</canonical>
            <polymorphic>GTCTGCGGATTATCCACATAATCCAATCTCCCCCTTCCCACTGGTCAACAAAAATTGTATACTTTCGATTTTACCTAGAGGGACAATGGTTTATGATCCCTTTGGTCGTATACTTTATGCCAATATGTATACAAATTCAATTTTAAAACAATTTCAAAATTGAATAGTATTCAAAAACCTTATTTGTTTGTTTACCCATACAACTCAACAAGATTTCTACCACAAAATCCAAAAATCCCAAAAAGCCCAAAGTTTTCCCACGAAATCCGAGTGGTCAAGTTGTTGCACTTCCTGTCCATTCGCCCATTTTCTCCCCTTCTCTCTACGTATATATAATAACAATAATAGCACGGCTGAATGCGTGCCAGAAGAATTCTCTTATTCTATACATACAACCCTGGGACGCATTCTTCTTTTCAATTTTTTCGCCACTTCAATTTTTTACAAAAGAATGTCTGTTCAATAGACACTTTCTCTCTTATCCTGTCTTCTTCCAAAAMTTATCTTTTATCCGTTTTTATTCCGGTCATGTTGTAAAGTGTGTGTTTTGTCATGCCCCTTGGAGCTCACACGGGGGCTCTCCAACCTCCCCGAGCACTTTTTCTCTCTTTACCTGATATCTCTCTTGCTTCAGAAGATTTCTTTAAAAACACCTGGCGCGTCTCTTTTTGCATCAATAGTAGTTATTAGAATAGTTTTGTGGCTTAATTCTTTAAATCCGTTGTATAAGATTCAAAAGAATATTCTTCCAGTTCTCGAACGGGTCCTGGAGTGATATTGGCGAATCGATGATCACCTCGAATTGCACTTTCACTGTTCGAAAAGGAGTGAGTTTAAAAATTCAAATCTTCAAAAAAATGAAAATGTTCCAGCCGCCATTACCAATGGACGATGATACGGATCTGATGAGTGTTCCGATGGTTCAATCAGTGTTCAATATTGATAGAGAGGCATTGCGAAGGGAAGAGCAGTGTGAGTTTTTGAAATTACTTTAAGGCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTTCTCCCCTTCTCTCTAC</pcr_primer_p1>
		<pcr_primer_p2>ATGACAAAACACACACTTTACAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTTTCTCCCCTTCTCTCTACGTATATATAATAACAATAATAGCACGGCTGAATGCGTGCCAGAAGAATTCTCTTATTCTATACATACAACCCTGGGACGCATTCTTCTTTTCAATTTTTTCGCCACTTCAATTTTTTACAAAAGAATGTCTGTTCAATAGACACTTTCTCTCTTATCCTGTCTTCTTCCAAAACTTATCTTTTATCCGTTTTTATTCCGGTCATGTTGTAAAGTGTGTGTTTTGTCAT</canonical_amplicon>
		<polymorphic_amplicon>CATTTTCTCCCCTTCTCTCTACGTATATATAATAACAATAATAGCACGGCTGAATGCGTGCCAGAAGAATTCTCTTATTCTATACATACAACCCTGGGACGCATTCTTCTTTTCAATTTTTTCGCCACTTCAATTTTTTACAAAAGAATGTCTGTTCAATAGACACTTTCTCTCTTATCCTGTCTTCTTCCAAAAMTTATCTTTTATCCGTTTTTATTCCGGTCATGTTGTAAAGTGTGTGTTTTGTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5404</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>160343</contig_pos>
        <strand>+</strand>
        <context>AAGGACGACC[C/T]TTCTTATACa</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTAATAAAAGGGTCCTTCGCAGGCAGCTTGGGATAAGAGAAAGGACGACC</left_flank>
        <right_flank>TTCTTATACATAGTAGCGGACATTAAGATATACAAAAACATAACTTTCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGTCTCTTTTTGCATCAATAGTAGTTATTAGAATAGTTTTGTGGCTTAATTCTTTAAATCCGTTGTATAAGATTCAAAAGAATATTCTTCCAGTTCTCGAACGGGTCCTGGAGTGATATTGGCGAATCGATGATCACCTCGAATTGCACTTTCACTGTTCGAAAAGGAGTGAGTTTAAAAATTCAAATCTTCAAAAAAATGAAAATGTTCCAGCCGCCATTACCAATGGACGATGATACGGATCTGATGAGTGTTCCGATGGTTCAATCAGTGTTCAATATTGATAGAGAGGCATTGCGAAGGGAAGAGCAGTGTGAGTTTTTGAAATTACTTTAAGGCCTGTATTAGAAAGGTCCCTTTAACAGAAGGGCCCCTCTAACAAAAAGGCCCTAATTGTAAGAGAAGGGCTTGGAAAAATGGAAGGATTCCCTCTTATTGCAGGAATCCTGTAATAAAAGGGTCCTTCGCAGGCAGCTTGGGATAAGAGAAAGGACGACCTTTCTTATACATAGTAGCGGACATTAAGATATACAAAAACATAACTTTCAGTTGATAATCAACTGAAACATACATTTTTGTAGATCTGATAGACCGGTACTGTCTAGACTTCTAGCAAATTACACTTTAGCCCTCTTTCTGGATTTTTAAATCATGGGAATTTTATTTTGATGAAAAAAACCCTGGTTTTTTTTTCAATACTATGTATTAGTTTTTTCAGTGCAATCGTCTGTTGTGCTCGGCGAGTCGCGCATCGGCGTCGAGCATCTTCCGATAATAGAAGACGAGAACGAACTCGAGACGCCTCTCGTCGAGACGAGAACTCTGCCAATTCCAAACGATGTGAATGCGAACTTATCGAAAAATCTCTCACCCACTAATCCATTCATCCAAGACACACTGCCTCCTATATTGGAAACCCCAAAAGTGGAAGTTCGTGAAAATGGTGAGTTTGGAAATTTAAGAAGAAGTGTATAAGAATGATTGATGAGAATTCATTTT</canonical>
            <polymorphic>GCGTCTCTTTTTGCATCAATAGTAGTTATTAGAATAGTTTTGTGGCTTAATTCTTTAAATCCGTTGTATAAGATTCAAAAGAATATTCTTCCAGTTCTCGAACGGGTCCTGGAGTGATATTGGCGAATCGATGATCACCTCGAATTGCACTTTCACTGTTCGAAAAGGAGTGAGTTTAAAAATTCAAATCTTCAAAAAAATGAAAATGTTCCAGCCGCCATTACCAATGGACGATGATACGGATCTGATGAGTGTTCCGATGGTTCAATCAGTGTTCAATATTGATAGAGAGGCATTGCGAAGGGAAGAGCAGTGTGAGTTTTTGAAATTACTTTAAGGCCTGTATTAGAAAGGTCCCTTTAACAGAAGGGCCCCTCTAACAAAAAGGCCCTAATTGTAAGAGAAGGGCTTGGAAAAATGGAAGGATTCCCTCTTATTGCAGGAATCCTGTAATAAAAGGGTCCTTCGCAGGCAGCTTGGGATAAGAGAAAGGACGACCYTTCTTATACATAGTAGCGGACATTAAGATATACAAAAACATAACTTTCAGTTGATAATCAACTGAAACATACATTTTTGTAGATCTGATAGACCGGTACTGTCTAGACTTCTAGCAAATTACACTTTAGCCCTCTTTCTGGATTTTTAAATCATGGGAATTTTATTTTGATGAAAAAAACCCTGGTTTTTTTTTCAATACTATGTATTAGTTTTTTCAGTGCAATCGTCTGTTGTGCTCGGCGAGTCGCGCATCGGCGTCGAGCATCTTCCGATAATAGAAGACGAGAACGAACTCGAGACGCCTCTCGTCGAGACGAGAACTCTGCCAATTCCAAACGATGTGAATGCGAACTTATCGAAAAATCTCTCACCCACTAATCCATTCATCCAAGACACACTGCCTCCTATATTGGAAACCCCAAAAGTGGAAGTTCGTGAAAATGGTGAGTTTGGAAATTTAAGAAGAAGTGTATAAGAATGATTGATGAGAATTCATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGCCCTAATTGTAAGAGAAG</pcr_primer_p1>
		<pcr_primer_p2>AGGGCTAAAGTGTAATTTGCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGGCCCTAATTGTAAGAGAAGGGCTTGGAAAAATGGAAGGATTCCCTCTTATTGCAGGAATCCTGTAATAAAAGGGTCCTTCGCAGGCAGCTTGGGATAAGAGAAAGGACGACCTTTCTTATACATAGTAGCGGACATTAAGATATACAAAAACATAACTTTCAGTTGATAATCAACTGAAACATACATTTTTGTAGATCTGATAGACCGGTACTGTCTAGACTTCTAGCAAATTACACTTTAGCCCT</canonical_amplicon>
		<polymorphic_amplicon>AAGGCCCTAATTGTAAGAGAAGGGCTTGGAAAAATGGAAGGATTCCCTCTTATTGCAGGAATCCTGTAATAAAAGGGTCCTTCGCAGGCAGCTTGGGATAAGAGAAAGGACGACCYTTCTTATACATAGTAGCGGACATTAAGATATACAAAAACATAACTTTCAGTTGATAATCAACTGAAACATACATTTTTGTAGATCTGATAGACCGGTACTGTCTAGACTTCTAGCAAATTACACTTTAGCCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5405</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>174264</contig_pos>
        <strand></strand>
        <context>TGAGAATCTA[T/C]TACTTTCTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTAGAATTTTATAATAAAATTTTAAAATAATGCTCTCCAATGAGAATCTA</left_flank>
        <right_flank>TACTTTCTAAAAAACAAGCCCTCGGTGCCCAGAAGAACTATTTAAAAAAT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGCTGGGCTTCAAAATGAGTACAAACGAGGTTCGGTTTTTTAAAGATTTTATATATTTCTTAAAATCTTCGTCGCGGGCAAATATTCGATGGTGGGCGGAGCTTCAGTTCGGTAGCGAAATCTTTGAAGAAACATATAATTTTCGTAATTATTTATATGGAATTCCATGGAGCCCCATGGAAATTCCAGACGTTTTTTTTTCGAGATTTCCAATGAATTTCATAAATTTTTTCCCCAAAAATCCGAAAAATGAAAAAAAAACAGCATAAAAACAGTGAAAATTATCGAAAAATCGATGAAACTCATCTAAAAATCGAAAAAGTAGGACTGAAAATGATAACGAAAAACCCTATAATTGTACCTTCAAGGATTTCAATACCGGGCCTAACCCCTTGTAAGCTCCGCCCAGAAGAAAAACTCTAAAAACCGAAAAAAAGGCATCATTTTTTAGAATTTTATAATAAAATTTTAAAATAATGCTCTCCAATGAGAATCTATTACTTTCTAAAAAACAAGCCCTCGGTGCCCAGAAGAACTATTTAAAAAATTTAAACAGTCCAAATATTTTTGACATCGAAAAAAATTGTCCACCTATATATTTTCTTTCCTATGCTGTCAAATATATCATTCTGACCATCACCTCCGCCCTCATGATACATTTTTCTTAAAAATCCAATTTCCACAAAAATGTAGCTCACAGAGCTCCGACTATAATGTATCACGAGGCAGAATGAATTTATGATTTTCCCGGTTGTTTTGTACGAATTCTCCACAAAACGGGCCGCCCATTTTTATCAGATTGTGTTGCTCTTTCTGTTATCTTGAGGGAGAGAACGACACGGTCGAAAGCACAGTTTCATGTGACTGATGAATGAGGGTCAAAAAATGACGTTATGTCAAAAATTCATGTCAAAAATTTAGAGAAAAAGAAGAGGAGAAAAATATATGTTAAGAAAAGTGTGTTAAGCTAAAAGTTTCGAAAAATTTGCAAACATGGA</canonical>
            <polymorphic>TGAGCTGGGCTTCAAAATGAGTACAAACGAGGTTCGGTTTTTTAAAGATTTTATATATTTCTTAAAATCTTCGTCGCGGGCAAATATTCGATGGTGGGCGGAGCTTCAGTTCGGTAGCGAAATCTTTGAAGAAACATATAATTTTCGTAATTATTTATATGGAATTCCATGGAGCCCCATGGAAATTCCAGACGTTTTTTTTTCGAGATTTCCAATGAATTTCATAAATTTTTTCCCCAAAAATCCGAAAAATGAAAAAAAAACAGCATAAAAACAGTGAAAATTATCGAAAAATCGATGAAACTCATCTAAAAATCGAAAAAGTAGGACTGAAAATGATAACGAAAAACCCTATAATTGTACCTTCAAGGATTTCAATACCGGGCCTAACCCCTTGTAAGCTCCGCCCAGAAGAAAAACTCTAAAAACCGAAAAAAAGGCATCATTTTTTAGAATTTTATAATAAAATTTTAAAATAATGCTCTCCAATGAGAATCTAYTACTTTCTAAAAAACAAGCCCTCGGTGCCCAGAAGAACTATTTAAAAAATTTAAACAGTCCAAATATTTTTGACATCGAAAAAAATTGTCCACCTATATATTTTCTTTCCTATGCTGTCAAATATATCATTCTGACCATCACCTCCGCCCTCATGATACATTTTTCTTAAAAATCCAATTTCCACAAAAATGTAGCTCACAGAGCTCCGACTATAATGTATCACGAGGCAGAATGAATTTATGATTTTCCCGGTTGTTTTGTACGAATTCTCCACAAAACGGGCCGCCCATTTTTATCAGATTGTGTTGCTCTTTCTGTTATCTTGAGGGAGAGAACGACACGGTCGAAAGCACAGTTTCATGTGACTGATGAATGAGGGTCAAAAAATGACGTTATGTCAAAAATTCATGTCAAAAATTTAGAGAAAAAGAAGAGGAGAAAAATATATGTTAAGAAAAGTGTGTTAAGCTAAAAGTTTCGAAAAATTTGCAAACATGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAAACTCTAAAAACCGAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGGTGATGGTCAGAATGATA</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>AGAAAAACTCTAAAAACCGAAAAAAAGGCATCATTTTTTAGAATTTTATAATAAAATTTTAAAATAATGCTCTCCAATGAGAATCTATTACTTTCTAAAAAACAAGCCCTCGGTGCCCAGAAGAACTATTTAAAAAATTTAAACAGTCCAAATATTTTTGACATCGAAAAAAATTGTCCACCTATATATTTTCTTTCCTATGCTGTCAAATATATCATTCTGACCATCACCTC</canonical_amplicon>
		<polymorphic_amplicon>AGAAAAACTCTAAAAACCGAAAAAAAGGCATCATTTTTTAGAATTTTATAATAAAATTTTAAAATAATGCTCTCCAATGAGAATCTAYTACTTTCTAAAAAACAAGCCCTCGGTGCCCAGAAGAACTATTTAAAAAATTTAAACAGTCCAAATATTTTTGACATCGAAAAAAATTGTCCACCTATATATTTTCTTTCCTATGCTGTCAAATATATCATTCTGACCATCACCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5406</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>175571</contig_pos>
        <strand>+</strand>
        <context>ACTAATAGTA[A/T]GTGTTTTATA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGAAAAGAATCTTCTAGACAAAAAATTTACAGATTTCTGACTAATAGTA</left_flank>
        <right_flank>GTGTTTTATATAAACATTCATTATATAAGGCAAACAAATTGAGTGGGTCG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATTTCGCCCTTGTTCTCTCGCAGCAGTCATGTCCGAGTGGTTAAGGAGATTGACTAGAAATCAATTGGGCTCTGCCCGCGTAGGTTCGAATCCTGCTGACTGCGTTAAACCTTTTTGATTTTTGACGGAACGAGAACAATATAGAAATCTCTAGAACAGAGTAGAATTCAGTTGACGTAGCTCTTCATGTAGTGCGGAATGGAAAATTTTTAAAAAGGAGAAGTTGAATAATAAAACTTTGGAATAGCACTCAAGGTGATTGATTTCCATCACTTATCTAGATGAGGATGAGTATTTTTACGACTTGAATGGAATTTTTAAGGTTCAAAAAAAAGTTGGTAATTAAAAAAGGAGTAGCACTTCTGATTAATTGAAAAAAGTAAGAATTAAATGCAAAAACTGAAGTCAAGGAATTTTAAGCAAGTTGGATCTCGAATTCCCCGAAACTAGAAAAGAATCTTCTAGACAAAAAATTTACAGATTTCTGACTAATAGTATGTGTTTTATATAAACATTCATTATATAAGGCAAACAAATTGAGTGGGTCGAAAAGTACTCGGAATTGTCGAGGAAGATTAAGATTTTCATTAGATTCTTCACGTTTTCAACATGTGAGTCTAATCCTAGCATGTTAGGGCTTTATAATGGGAACAGAAAAGGTTTGAGGACAATTTTTTTGGTTTATCGCAAATATGAGATTTTTGAAAAATTGTCTACAGTTTTACAGAGATTGCAGAATATGTATATTACTGTATTCCCTTCAATAGACGCCCACTCAAATCGTCAACTTCGAGCTCAATTACCTCGGTTGCTATTGTCGAATTAAAAAAAGTGGGTCCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAACGTAATATTTCAGATTTTCGCCTCGTTCGAGCTACTTTCGTAATTAAGTTCGGTTTTTCGATAAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAG</canonical>
            <polymorphic>TCATTTCGCCCTTGTTCTCTCGCAGCAGTCATGTCCGAGTGGTTAAGGAGATTGACTAGAAATCAATTGGGCTCTGCCCGCGTAGGTTCGAATCCTGCTGACTGCGTTAAACCTTTTTGATTTTTGACGGAACGAGAACAATATAGAAATCTCTAGAACAGAGTAGAATTCAGTTGACGTAGCTCTTCATGTAGTGCGGAATGGAAAATTTTTAAAAAGGAGAAGTTGAATAATAAAACTTTGGAATAGCACTCAAGGTGATTGATTTCCATCACTTATCTAGATGAGGATGAGTATTTTTACGACTTGAATGGAATTTTTAAGGTTCAAAAAAAAGTTGGTAATTAAAAAAGGAGTAGCACTTCTGATTAATTGAAAAAAGTAAGAATTAAATGCAAAAACTGAAGTCAAGGAATTTTAAGCAAGTTGGATCTCGAATTCCCCGAAACTAGAAAAGAATCTTCTAGACAAAAAATTTACAGATTTCTGACTAATAGTAWGTGTTTTATATAAACATTCATTATATAAGGCAAACAAATTGAGTGGGTCGAAAAGTACTCGGAATTGTCGAGGAAGATTAAGATTTTCATTAGATTCTTCACGTTTTCAACATGTGAGTCTAATCCTAGCATGTTAGGGCTTTATAATGGGAACAGAAAAGGTTTGAGGACAATTTTTTTGGTTTATCGCAAATATGAGATTTTTGAAAAATTGTCTACAGTTTTACAGAGATTGCAGAATATGTATATTACTGTATTCCCTTCAATAGACGCCCACTCAAATCGTCAACTTCGAGCTCAATTACCTCGGTTGCTATTGTCGAATTAAAAAAAGTGGGTCCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAACGTAATATTTCAGATTTTCGCCTCGTTCGAGCTACTTTCGTAATTAAGTTCGGTTTTTCGATAAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAATTAAATGCAAAAACTGAAG</pcr_primer_p1>
		<pcr_primer_p2>ACATGCTAGGATTAGACTCACAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAATTAAATGCAAAAACTGAAGTCAAGGAATTTTAAGCAAGTTGGATCTCGAATTCCCCGAAACTAGAAAAGAATCTTCTAGACAAAAAATTTACAGATTTCTGACTAATAGTATGTGTTTTATATAAACATTCATTATATAAGGCAAACAAATTGAGTGGGTCGAAAAGTACTCGGAATTGTCGAGGAAGATTAAGATTTTCATTAGATTCTTCACGTTTTCAACATGTGAGTCTAATCCTAGCATGT</canonical_amplicon>
		<polymorphic_amplicon>AGAATTAAATGCAAAAACTGAAGTCAAGGAATTTTAAGCAAGTTGGATCTCGAATTCCCCGAAACTAGAAAAGAATCTTCTAGACAAAAAATTTACAGATTTCTGACTAATAGTAWGTGTTTTATATAAACATTCATTATATAAGGCAAACAAATTGAGTGGGTCGAAAAGTACTCGGAATTGTCGAGGAAGATTAAGATTTTCATTAGATTCTTCACGTTTTCAACATGTGAGTCTAATCCTAGCATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5407</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>196338</contig_pos>
        <strand></strand>
        <context>taGAAAAAAA[A/G]ATATAACAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAGATGAGCTCAAAGCTGACGGTTCAGATAAGCTTCTATTAGAAAAAAA</left_flank>
        <right_flank>ATATAACAAAAAACCCTAAGAAACAGAAATCTACAAAAATTGACTGGTGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAGAATACAAAGGGGTCGTTGAGCAAGTTTTAGGCAGGTGATAAGTATTGAAAAAATTCCTAAATAATTTTAACAAACTACAAATGGTTTAAAAGCCTCACAACAGACTAGGGATACTGTAGTTGTGATGAGATCTACAGAATGCATATTTTGAAAAGATAATGAACTTTCTGACACAAAAAGAACCCTTTGAAAGTTGATAACATATCTTCAGTTAAACGTTCTTGATTTCATTTTTCAGAAATTCTAGAACCATTAATCAATTTACAGTGTTTCCGCTAATGAAGCCTGCCCGAACCATCCTCTTCAAGAGGATTCCTCTTCGAGCTAAATTATCATGGTTCCTATGAGAGATATCAAAAATCTGTCAACTGATAGAATGTTTTTGATATAATGATAAAAATGTATATGTTGAACAAATTTTTGATATCTTTCTCAGGAATCGAGATAGATGAGCTCAAAGCTGACGGTTCAGATAAGCTTCTATTAGAAAAAAAAATATAACAAAAAACCCTAAGAAACAGAAATCTACAAAAATTGACTGGTGATCAGCGGCGAACTCCAAATTAACGACCTATTCAAGTGTCAAGTGGATGTTTACACCAAACAACAATCTAAAACTAAATCAACTATCCTGAAAACCAAACACACATATTTATTTACTATCTCTTCTCCGCCTTATTTGTAGAAAAAATCTCTCAAAATCCAAACATCAATGTCAACAATTCAAGGTTTGACAGCGTCGGGGACGACCTCGCGGGATGGATGGAACACGAAAACACAAAACTGACTACTGTGTAATTGATTAGTTTAGCAGGAAAGGAACTCTTTTTTCTTTGTTTTCCTTCTATTTCGGGGAACTGTTATCACAGCTGAACAATAGGACAGAAAAAGAACGAACATCAGAAAAGAACTGACCTTCGATATCATCAAGCTATCAATCTACTTTTCTCCTCTATCGAAAAAAAGAACGAAGGTGCGGAAAAAGGTAAACGGGA</canonical>
            <polymorphic>ACCAGAATACAAAGGGGTCGTTGAGCAAGTTTTAGGCAGGTGATAAGTATTGAAAAAATTCCTAAATAATTTTAACAAACTACAAATGGTTTAAAAGCCTCACAACAGACTAGGGATACTGTAGTTGTGATGAGATCTACAGAATGCATATTTTGAAAAGATAATGAACTTTCTGACACAAAAAGAACCCTTTGAAAGTTGATAACATATCTTCAGTTAAACGTTCTTGATTTCATTTTTCAGAAATTCTAGAACCATTAATCAATTTACAGTGTTTCCGCTAATGAAGCCTGCCCGAACCATCCTCTTCAAGAGGATTCCTCTTCGAGCTAAATTATCATGGTTCCTATGAGAGATATCAAAAATCTGTCAACTGATAGAATGTTTTTGATATAATGATAAAAATGTATATGTTGAACAAATTTTTGATATCTTTCTCAGGAATCGAGATAGATGAGCTCAAAGCTGACGGTTCAGATAAGCTTCTATTAGAAAAAAARATATAACAAAAAACCCTAAGAAACAGAAATCTACAAAAATTGACTGGTGATCAGCGGCGAACTCCAAATTAACGACCTATTCAAGTGTCAAGTGGATGTTTACACCAAACAACAATCTAAAACTAAATCAACTATCCTGAAAACCAAACACACATATTTATTTACTATCTCTTCTCCGCCTTATTTGTAGAAAAAATCTCTCAAAATCCAAACATCAATGTCAACAATTCAAGGTTTGACAGCGTCGGGGACGACCTCGCGGGATGGATGGAACACGAAAACACAAAACTGACTACTGTGTAATTGATTAGTTTAGCAGGAAAGGAACTCTTTTTTCTTTGTTTTCCTTCTATTTCGGGGAACTGTTATCACAGCTGAACAATAGGACAGAAAAAGAACGAACATCAGAAAAGAACTGACCTTCGATATCATCAAGCTATCAATCTACTTTTCTCCTCTATCGAAAAAAAGAACGAAGGTGCGGAAAAAGGTAAACGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTGTTTCCGCTAATGAAG</pcr_primer_p1>
		<pcr_primer_p2>TGATCACCAGTCAATTTTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>CAGTGTTTCCGCTAATGAAGCCTGCCCGAACCATCCTCTTCAAGAGGATTCCTCTTCGAGCTAAATTATCATGGTTCCTATGAGAGATATCAAAAATCTGTCAACTGATAGAATGTTTTTGATATAATGATAAAAATGTATATGTTGAACAAATTTTTGATATCTTTCTCAGGAATCGAGATAGATGAGCTCAAAGCTGACGGTTCAGATAAGCTTCTATTAGAAAAAAAAATATAACAAAAAACCCTAAGAAACAGAAATCTACAAAAATTGACTGGTGATCA</canonical_amplicon>
		<polymorphic_amplicon>CAGTGTTTCCGCTAATGAAGCCTGCCCGAACCATCCTCTTCAAGAGGATTCCTCTTCGAGCTAAATTATCATGGTTCCTATGAGAGATATCAAAAATCTGTCAACTGATAGAATGTTTTTGATATAATGATAAAAATGTATATGTTGAACAAATTTTTGATATCTTTCTCAGGAATCGAGATAGATGAGCTCAAAGCTGACGGTTCAGATAAGCTTCTATTAGAAAAAAARATATAACAAAAAACCCTAAGAAACAGAAATCTACAAAAATTGACTGGTGATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5408</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>199798</contig_pos>
        <strand>+</strand>
        <context>GTGGTTCTTT[C/T]TGTTTCTACC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCCCTGTGTCCTTTTAAAATGAATCTATTGCTATTTCAGTGGTTCTTT</left_flank>
        <right_flank>TGTTTCTACCAAGAAAGCCCCTCTAGGTAATTGCACACACATAACCCCAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGAAATGCCAGCTTACACTGAATCAAAATATTTTATTTTAAACTGAAATAAATAGAACATATTTTGAACAATTAGTTTTCAAAGTCCCAAATTCCATGGAAAAGACAATCATCGTTTATAGACACTAAATTAAACAGATACTATTTCAGTCAAGACATCCTCAATGCATCATTCCTCATCTCTGAACCACTGCTTTCAAAAATTCGAAACAAAGCTGCAGCCACCTATGATAAGTACAAAGTGTTTCTCCCTCAACAACAGTCCAGTTTCATCTAAATATCTGTGCATTTATACTATTTTTCAAATCCGATTTATATAATATCTTCATTTTTCCGATTACAATGACCTCATACTCTTGTCTTCCTCGTATTCATGTAAATCTAAGTCTCAAAAAATTAGACGCTAGTTTCTTTTTTGTTTATATATATACAATGCCCTCCTCAAATATTTCCCTGTGTCCTTTTAAAATGAATCTATTGCTATTTCAGTGGTTCTTTTTGTTTCTACCAAGAAAGCCCCTCTAGGTAATTGCACACACATAACCCCAGATACATGACATAAGCTCATGTAGAAAAAAAAGAAAAAAGAAGTATAAGTAGATAGATGCTTTCCGGCAATTATCCACCGCACCGTAGTTATCGGGAGCAGAGTTTGTGGGTCGTCAGGAGACGACAGACATGATTCAGAAACGGGGATTCAGAAGAAAAACGACGATGATATTGAGGGAGGAGGAGAAGGTATACACACACCGGAATACTTCGACATGCCACTCTCTTCTTGGATATTCCCGATTTTTCCCGAACTCAGGAGAGACCCTCTCACATTTTTCTCTTTTTTGTTGGATTTGGTTCCTGGAGAAGTGGCTCTTTTTTATTAATTTTTTTGATAATTTATAAACGGATAAGGTTAAAATTCAGATTTGAAAAGTCCCATCGAAAAACTGTATTCTCGTTTCCTGAGTCACCGAAATCTCTAGTTATGCAGTTGGTGCCAACAGG</canonical>
            <polymorphic>TCTGAAATGCCAGCTTACACTGAATCAAAATATTTTATTTTAAACTGAAATAAATAGAACATATTTTGAACAATTAGTTTTCAAAGTCCCAAATTCCATGGAAAAGACAATCATCGTTTATAGACACTAAATTAAACAGATACTATTTCAGTCAAGACATCCTCAATGCATCATTCCTCATCTCTGAACCACTGCTTTCAAAAATTCGAAACAAAGCTGCAGCCACCTATGATAAGTACAAAGTGTTTCTCCCTCAACAACAGTCCAGTTTCATCTAAATATCTGTGCATTTATACTATTTTTCAAATCCGATTTATATAATATCTTCATTTTTCCGATTACAATGACCTCATACTCTTGTCTTCCTCGTATTCATGTAAATCTAAGTCTCAAAAAATTAGACGCTAGTTTCTTTTTTGTTTATATATATACAATGCCCTCCTCAAATATTTCCCTGTGTCCTTTTAAAATGAATCTATTGCTATTTCAGTGGTTCTTTYTGTTTCTACCAAGAAAGCCCCTCTAGGTAATTGCACACACATAACCCCAGATACATGACATAAGCTCATGTAGAAAAAAAAGAAAAAAGAAGTATAAGTAGATAGATGCTTTCCGGCAATTATCCACCGCACCGTAGTTATCGGGAGCAGAGTTTGTGGGTCGTCAGGAGACGACAGACATGATTCAGAAACGGGGATTCAGAAGAAAAACGACGATGATATTGAGGGAGGAGGAGAAGGTATACACACACCGGAATACTTCGACATGCCACTCTCTTCTTGGATATTCCCGATTTTTCCCGAACTCAGGAGAGACCCTCTCACATTTTTCTCTTTTTTGTTGGATTTGGTTCCTGGAGAAGTGGCTCTTTTTTATTAATTTTTTTGATAATTTATAAACGGATAAGGTTAAAATTCAGATTTGAAAAGTCCCATCGAAAAACTGTATTCTCGTTTCCTGAGTCACCGAAATCTCTAGTTATGCAGTTGGTGCCAACAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCTTCATTTTTCCGATTACAA</pcr_primer_p1>
		<pcr_primer_p2>CATGAGCTTATGTCATGTATCTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATCTTCATTTTTCCGATTACAATGACCTCATACTCTTGTCTTCCTCGTATTCATGTAAATCTAAGTCTCAAAAAATTAGACGCTAGTTTCTTTTTTGTTTATATATATACAATGCCCTCCTCAAATATTTCCCTGTGTCCTTTTAAAATGAATCTATTGCTATTTCAGTGGTTCTTTTTGTTTCTACCAAGAAAGCCCCTCTAGGTAATTGCACACACATAACCCCAGATACATGACATAAGCTCATG</canonical_amplicon>
		<polymorphic_amplicon>TATCTTCATTTTTCCGATTACAATGACCTCATACTCTTGTCTTCCTCGTATTCATGTAAATCTAAGTCTCAAAAAATTAGACGCTAGTTTCTTTTTTGTTTATATATATACAATGCCCTCCTCAAATATTTCCCTGTGTCCTTTTAAAATGAATCTATTGCTATTTCAGTGGTTCTTTYTGTTTCTACCAAGAAAGCCCCTCTAGGTAATTGCACACACATAACCCCAGATACATGACATAAGCTCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5409</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>199450</contig_pos>
        <strand>+</strand>
        <context>ACTATTTCAG[C/T]CAAGACATCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAGACAATCATCGTTTATAGACACTAAATTAAACAGATACTATTTCAG</left_flank>
        <right_flank>CAAGACATCCTCAATGCATCATTCCTCATCTCTGAACCACTGCTTTCAAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTATTTGTAAGTTTGTTATGAATGTTTAAAGGTAACAGCAAGAAAAAAGAGAGAAAAGGAGTAGGGGCAGGAAATGATTATCTTTTTTCTTTTTTGTCGATGGATAATGTTTCGAATTAGAACTTGCTTCGCCGAGCAGCACTTCCTTCCAACAACGACGGATAATGCAAAAGAATTCAAGAAAAGAAAAAAGTTCAACGAAAAAAGAGAAAATTTCAAAAAACATCGCTGAAAAGTCATTGAAAAAAACGCAAAAATTCTGCGGTTTCCCACGAACTGTACACGAGGACAACAGTAGCGCGCATTTGCATACCGCCAAATTGACTGAAAATTGCTCGTAATTATAGTCTGAAATGCCAGCTTACACTGAATCAAAATATTTTATTTTAAACTGAAATAAATAGAACATATTTTGAACAATTAGTTTTCAAAGTCCCAAATTCCATGGAAAAGACAATCATCGTTTATAGACACTAAATTAAACAGATACTATTTCAGTCAAGACATCCTCAATGCATCATTCCTCATCTCTGAACCACTGCTTTCAAAAATTCGAAACAAAGCTGCAGCCACCTATGATAAGTACAAAGTGTTTCTCCCTCAACAACAGTCCAGTTTCATCTAAATATCTGTGCATTTATACTATTTTTCAAATCCGATTTATATAATATCTTCATTTTTCCGATTACAATGACCTCATACTCTTGTCTTCCTCGTATTCATGTAAATCTAAGTCTCAAAAAATTAGACGCTAGTTTCTTTTTTGTTTATATATATACAATGCCCTCCTCAAATATTTCCCTGTGTCCTTTTAAAATGAATCTATTGCTATTTCAGTGGTTCTTTTTGTTTCTACCAAGAAAGCCCCTCTAGGTAATTGCACACACATAACCCCAGATACATGACATAAGCTCATGTAGAAAAAAAAGAAAAAAGAAGTATAAGTAGATAGATGCTTTCCGGCAATTATCCACCGCACCGTAGTTATCGGGAGCAGAG</canonical>
            <polymorphic>ACTATTTGTAAGTTTGTTATGAATGTTTAAAGGTAACAGCAAGAAAAAAGAGAGAAAAGGAGTAGGGGCAGGAAATGATTATCTTTTTTCTTTTTTGTCGATGGATAATGTTTCGAATTAGAACTTGCTTCGCCGAGCAGCACTTCCTTCCAACAACGACGGATAATGCAAAAGAATTCAAGAAAAGAAAAAAGTTCAACGAAAAAAGAGAAAATTTCAAAAAACATCGCTGAAAAGTCATTGAAAAAAACGCAAAAATTCTGCGGTTTCCCACGAACTGTACACGAGGACAACAGTAGCGCGCATTTGCATACCGCCAAATTGACTGAAAATTGCTCGTAATTATAGTCTGAAATGCCAGCTTACACTGAATCAAAATATTTTATTTTAAACTGAAATAAATAGAACATATTTTGAACAATTAGTTTTCAAAGTCCCAAATTCCATGGAAAAGACAATCATCGTTTATAGACACTAAATTAAACAGATACTATTTCAGYCAAGACATCCTCAATGCATCATTCCTCATCTCTGAACCACTGCTTTCAAAAATTCGAAACAAAGCTGCAGCCACCTATGATAAGTACAAAGTGTTTCTCCCTCAACAACAGTCCAGTTTCATCTAAATATCTGTGCATTTATACTATTTTTCAAATCCGATTTATATAATATCTTCATTTTTCCGATTACAATGACCTCATACTCTTGTCTTCCTCGTATTCATGTAAATCTAAGTCTCAAAAAATTAGACGCTAGTTTCTTTTTTGTTTATATATATACAATGCCCTCCTCAAATATTTCCCTGTGTCCTTTTAAAATGAATCTATTGCTATTTCAGTGGTTCTTTTTGTTTCTACCAAGAAAGCCCCTCTAGGTAATTGCACACACATAACCCCAGATACATGACATAAGCTCATGTAGAAAAAAAAGAAAAAAGAAGTATAAGTAGATAGATGCTTTCCGGCAATTATCCACCGCACCGTAGTTATCGGGAGCAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>489 322 179 10</canonical_bands>
                <polymorphic_bands>811 179 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAGCTTACACTGAATCAAAATA</pcr_primer_p1>
		<pcr_primer_p2>GAGGGAGAAACACTTTGTACTTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CCAGCTTACACTGAATCAAAATATTTTATTTTAAACTGAAATAAATAGAACATATTTTGAACAATTAGTTTTCAAAGTCCCAAATTCCATGGAAAAGACAATCATCGTTTATAGACACTAAATTAAACAGATACTATTTCAGTCAAGACATCCTCAATGCATCATTCCTCATCTCTGAACCACTGCTTTCAAAAATTCGAAACAAAGCTGCAGCCACCTATGATAAGTACAAAGTGTTTCTCCCTC</canonical_amplicon>
		<polymorphic_amplicon>CCAGCTTACACTGAATCAAAATATTTTATTTTAAACTGAAATAAATAGAACATATTTTGAACAATTAGTTTTCAAAGTCCCAAATTCCATGGAAAAGACAATCATCGTTTATAGACACTAAATTAAACAGATACTATTTCAGYCAAGACATCCTCAATGCATCATTCCTCATCTCTGAACCACTGCTTTCAAAAATTCGAAACAAAGCTGCAGCCACCTATGATAAGTACAAAGTGTTTCTCCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5410</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>199391</contig_pos>
        <strand></strand>
        <context>AAAGTCCCAA[A/T]TTWCATGGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACTGAAATAAATAGAACATATTTTGAACAATTAGTTTTCAAAGTCCCAA</left_flank>
        <right_flank>TTCCATGGAAAAGACAATCATCGTTTATAGACACTAAATTAAACAGATAC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCACCTGGTAGATGCTATCTACTCGCTGCTGAAGACGCCCGTCAACTCGTGTCCCCTAACTATTTGTAAGTTTGTTATGAATGTTTAAAGGTAACAGCAAGAAAAAAGAGAGAAAAGGAGTAGGGGCAGGAAATGATTATCTTTTTTCTTTTTTGTCGATGGATAATGTTTCGAATTAGAACTTGCTTCGCCGAGCAGCACTTCCTTCCAACAACGACGGATAATGCAAAAGAATTCAAGAAAAGAAAAAAGTTCAACGAAAAAAGAGAAAATTTCAAAAAACATCGCTGAAAAGTCATTGAAAAAAACGCAAAAATTCTGCGGTTTCCCACGAACTGTACACGAGGACAACAGTAGCGCGCATTTGCATACCGCCAAATTGACTGAAAATTGCTCGTAATTATAGTCTGAAATGCCAGCTTACACTGAATCAAAATATTTTATTTTAAACTGAAATAAATAGAACATATTTTGAACAATTAGTTTTCAAAGTCCCAAATTCCATGGAAAAGACAATCATCGTTTATAGACACTAAATTAAACAGATACTATTTCAGTCAAGACATCCTCAATGCATCATTCCTCATCTCTGAACCACTGCTTTCAAAAATTCGAAACAAAGCTGCAGCCACCTATGATAAGTACAAAGTGTTTCTCCCTCAACAACAGTCCAGTTTCATCTAAATATCTGTGCATTTATACTATTTTTCAAATCCGATTTATATAATATCTTCATTTTTCCGATTACAATGACCTCATACTCTTGTCTTCCTCGTATTCATGTAAATCTAAGTCTCAAAAAATTAGACGCTAGTTTCTTTTTTGTTTATATATATACAATGCCCTCCTCAAATATTTCCCTGTGTCCTTTTAAAATGAATCTATTGCTATTTCAGTGGTTCTTTTTGTTTCTACCAAGAAAGCCCCTCTAGGTAATTGCACACACATAACCCCAGATACATGACATAAGCTCATGTAGAAAAAAAAGAAAAAAGAAGT</canonical>
            <polymorphic>GGCACCTGGTAGATGCTATCTACTCGCTGCTGAAGACGCCCGTCAACTCGTGTCCCCTAACTATTTGTAAGTTTGTTATGAATGTTTAAAGGTAACAGCAAGAAAAAAGAGAGAAAAGGAGTAGGGGCAGGAAATGATTATCTTTTTTCTTTTTTGTCGATGGATAATGTTTCGAATTAGAACTTGCTTCGCCGAGCAGCACTTCCTTCCAACAACGACGGATAATGCAAAAGAATTCAAGAAAAGAAAAAAGTTCAACGAAAAAAGAGAAAATTTCAAAAAACATCGCTGAAAAGTCATTGAAAAAAACGCAAAAATTCTGCGGTTTCCCACGAACTGTACACGAGGACAACAGTAGCGCGCATTTGCATACCGCCAAATTGACTGAAAATTGCTCGTAATTATAGTCTGAAATGCCAGCTTACACTGAATCAAAATATTTTATTTTAAACTGAAATAAATAGAACATATTTTGAACAATTAGTTTTCAAAGTCCCAAWTTCCATGGAAAAGACAATCATCGTTTATAGACACTAAATTAAACAGATACTATTTCAGTCAAGACATCCTCAATGCATCATTCCTCATCTCTGAACCACTGCTTTCAAAAATTCGAAACAAAGCTGCAGCCACCTATGATAAGTACAAAGTGTTTCTCCCTCAACAACAGTCCAGTTTCATCTAAATATCTGTGCATTTATACTATTTTTCAAATCCGATTTATATAATATCTTCATTTTTCCGATTACAATGACCTCATACTCTTGTCTTCCTCGTATTCATGTAAATCTAAGTCTCAAAAAATTAGACGCTAGTTTCTTTTTTGTTTATATATATACAATGCCCTCCTCAAATATTTCCCTGTGTCCTTTTAAAATGAATCTATTGCTATTTCAGTGGTTCTTTTTGTTTCTACCAAGAAAGCCCCTCTAGGTAATTGCACACACATAACCCCAGATACATGACATAAGCTCATGTAGAAAAAAAAGAAAAAAGAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>391 233 183 111 44 38</canonical_bands>
                <polymorphic_bands>391 294 233 44 38</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>193 174 133 79 73 65 63 59 44 38 38 20 11 10</canonical_bands>
                <polymorphic_bands>193 174 133 79 73 65 63 59 58 44 38 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAGCTTACACTGAATCAAAATA</pcr_primer_p1>
		<pcr_primer_p2>GAGGGAGAAACACTTTGTACTTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CCAGCTTACACTGAATCAAAATATTTTATTTTAAACTGAAATAAATAGAACATATTTTGAACAATTAGTTTTCAAAGTCCCAAATTCCATGGAAAAGACAATCATCGTTTATAGACACTAAATTAAACAGATACTATTTCAGTCAAGACATCCTCAATGCATCATTCCTCATCTCTGAACCACTGCTTTCAAAAATTCGAAACAAAGCTGCAGCCACCTATGATAAGTACAAAGTGTTTCTCCCTC</canonical_amplicon>
		<polymorphic_amplicon>CCAGCTTACACTGAATCAAAATATTTTATTTTAAACTGAAATAAATAGAACATATTTTGAACAATTAGTTTTCAAAGTCCCAAWTTCCATGGAAAAGACAATCATCGTTTATAGACACTAAATTAAACAGATACTATTTCAGTCAAGACATCCTCAATGCATCATTCCTCATCTCTGAACCACTGCTTTCAAAAATTCGAAACAAAGCTGCAGCCACCTATGATAAGTACAAAGTGTTTCTCCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5411</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>231954</contig_pos>
        <strand>+</strand>
        <context>ATTCTTACTT[A/T]ACCGTGTACT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGGATTTTTTAAAAGAGTTTTTTGGAGTTAGAATATTCATTCTTACTT</left_flank>
        <right_flank>ACCGTGTACTATGCTCAGTGGACAGCTATCGTATCCGCTGTTATACTTGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCCCTCCTGGTCCGTCCAAAGTCTTAAAACTTTCCCTCTATTTTTGCCACTCTCAAATTTCCTTGGTCTTCTTATTCCTCGATTTCCGGTGCAACCACTCCCTTTTGAGTTTCTATCTCTATTTATTCCATGTCATCATAATATCTTCTATAGAAACTTTGTTTATTCCAGAAAAATCTTGGTACATCAGATACCAAGAATTATCTTTTCTACGAGGGGTTGATCTTTTGGGAAATATTTGAAACCCGGAAAAAGCGCGATGTACCGGGGGAAAGATGTTTGAGTTATTATTATTTTAATTGCTATATTTGCAATTCGAAGGAGGTTCTTCGAAATAATTTTCTATTTTCCGCCCGCTATCCATACTTTGAAAATTGAAGGAGGCTTGTCTGTTTTGAAGTTTGTATATTGCACATTTTTGAGCTTTAGAAGAGCTAGGATTTGAATTTTGGATTTTTTAAAAGAGTTTTTTGGAGTTAGAATATTCATTCTTACTTTACCGTGTACTATGCTCAGTGGACAGCTATCGTATCCGCTGTTATACTTGGCCATTCTAGCTTCGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCTTCAATATTCGTCCCACAGGTTCAAATCCTTGAGAGGCTTAAATTAACAAAATTTTGAGACAGTTTTTTTTCGGCACTTGGGGGTACAAAGTGATTTAGGGGTACAAAATCCTCGATTCGGGGGTTAAAAATCGGATTTTCGGGTATCTTGTACCACGAAGTGAAAATTTTGTAGCCCTAAATTTCTTTGTGCTCCTTTGTGCAAATTATTTTTCTTTGTGCAAATTATTTTCTTTTTTTGATTTCTTTGTGCAAATTATTTTCTTTTTTTAATGCCCTCCTTTTTTTAAATTAGAACACCAATTGAAGAAAGTGACAAGAATAGACTTTATTTGTATTCATAAATCTCTGTGGACCATGAATTCTGAATTATAAATTGTAACATCTGGTTTCTGAATAACTT</canonical>
            <polymorphic>TTCCCCTCCTGGTCCGTCCAAAGTCTTAAAACTTTCCCTCTATTTTTGCCACTCTCAAATTTCCTTGGTCTTCTTATTCCTCGATTTCCGGTGCAACCACTCCCTTTTGAGTTTCTATCTCTATTTATTCCATGTCATCATAATATCTTCTATAGAAACTTTGTTTATTCCAGAAAAATCTTGGTACATCAGATACCAAGAATTATCTTTTCTACGAGGGGTTGATCTTTTGGGAAATATTTGAAACCCGGAAAAAGCGCGATGTACCGGGGGAAAGATGTTTGAGTTATTATTATTTTAATTGCTATATTTGCAATTCGAAGGAGGTTCTTCGAAATAATTTTCTATTTTCCGCCCGCTATCCATACTTTGAAAATTGAAGGAGGCTTGTCTGTTTTGAAGTTTGTATATTGCACATTTTTGAGCTTTAGAAGAGCTAGGATTTGAATTTTGGATTTTTTAAAAGAGTTTTTTGGAGTTAGAATATTCATTCTTACTTWACCGTGTACTATGCTCAGTGGACAGCTATCGTATCCGCTGTTATACTTGGCCATTCTAGCTTCGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCTTCAATATTCGTCCCACAGGTTCAAATCCTTGAGAGGCTTAAATTAACAAAATTTTGAGACAGTTTTTTTTCGGCACTTGGGGGTACAAAGTGATTTAGGGGTACAAAATCCTCGATTCGGGGGTTAAAAATCGGATTTTCGGGTATCTTGTACCACGAAGTGAAAATTTTGTAGCCCTAAATTTCTTTGTGCTCCTTTGTGCAAATTATTTTTCTTTGTGCAAATTATTTTCTTTTTTTGATTTCTTTGTGCAAATTATTTTCTTTTTTTAATGCCCTCCTTTTTTTAAATTAGAACACCAATTGAAGAAAGTGACAAGAATAGACTTTATTTGTATTCATAAATCTCTGTGGACCATGAATTCTGAATTATAAATTGTAACATCTGGTTTCTGAATAACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTTGTATATTGCACATTTTTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTTAATTTAAGCCTCTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGTTTGTATATTGCACATTTTTGAGCTTTAGAAGAGCTAGGATTTGAATTTTGGATTTTTTAAAAGAGTTTTTTGGAGTTAGAATATTCATTCTTACTTTACCGTGTACTATGCTCAGTGGACAGCTATCGTATCCGCTGTTATACTTGGCCATTCTAGCTTCGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCTTCAATATTCGTCCCACAGGTTCAAATCCTTGAGAGGCTTAAATTAACAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAGTTTGTATATTGCACATTTTTGAGCTTTAGAAGAGCTAGGATTTGAATTTTGGATTTTTTAAAAGAGTTTTTTGGAGTTAGAATATTCATTCTTACTTWACCGTGTACTATGCTCAGTGGACAGCTATCGTATCCGCTGTTATACTTGGCCATTCTAGCTTCGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCTTCAATATTCGTCCCACAGGTTCAAATCCTTGAGAGGCTTAAATTAACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5412</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>22108</contig_pos>
        <strand>+</strand>
        <context>TCTGGTAYGA[A/G]TTCTGTTCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGA</left_flank>
        <right_flank>TTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGTTTTTTTAGGTTTTAGTCGCCCTGGAATTTTTTAATTCAAACCAAAATTGGGGTACCAACAATGCAATAAAAACTGGATACAAAAAAGTTTTAAATCCTTGAAATCAGCTGAAAGTAAGCTTCGAACCGGTCAAGAAAAGGTAAAAGTGCTCCAGGACTGAAGACTGAAAACCGAAGACAAACTTTTTTGGTTTTCAATTTTCGTCTTATCAGCTCGAGTGTGCACAATGGAGCGAAAAGGAAATGGTGGTGCACTATCAATTTCCAATCATTTTCTGTTGGCTGCTGGAATGTGGGAGACAAAAAAAAGTAGATGATGTAATAGACGGAGTTGGAAGTATTCGTAGAGTACGAATC</canonical>
            <polymorphic>TAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGARTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGTTTTTTTAGGTTTTAGTCGCCCTGGAATTTTTTAATTCAAACCAAAATTGGGGTACCAACAATGCAATAAAAACTGGATACAAAAAAGTTTTAAATCCTTGAAATCAGCTGAAAGTAAGCTTCGAACCGGTCAAGAAAAGGTAAAAGTGCTCCAGGACTGAAGACTGAAAACCGAAGACAAACTTTTTTGGTTTTCAATTTTCGTCTTATCAGCTCGAGTGTGCACAATGGAGCGAAAAGGAAATGGTGGTGCACTATCAATTTCCAATCATTTTCTGTTGGCTGCTGGAATGTGGGAGACAAAAAAAAGTAGATGATGTAATAGACGGAGTTGGAAGTATTCGTAGAGTACGAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATCCATCTCTTCACATCTTC</pcr_primer_p1>
		<pcr_primer_p2>CCCAATTTTGGTTTGAATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGTTTTTTTAGGTTTTAGTCGCCCTGGAATTTTTTAATTCAAACCAAAATTGGG</canonical_amplicon>
		<polymorphic_amplicon>TCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGARTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGTTTTTTTAGGTTTTAGTCGCCCTGGAATTTTTTAATTCAAACCAAAATTGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5413</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>22105</contig_pos>
        <strand>+</strand>
        <context>TTCTCTGGTA[C/T]GARTTCTGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTA</left_flank>
        <right_flank>GAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGTTTTTTTAGGTTTTAGTCGCCCTGGAATTTTTTAATTCAAACCAAAATTGGGGTACCAACAATGCAATAAAAACTGGATACAAAAAAGTTTTAAATCCTTGAAATCAGCTGAAAGTAAGCTTCGAACCGGTCAAGAAAAGGTAAAAGTGCTCCAGGACTGAAGACTGAAAACCGAAGACAAACTTTTTTGGTTTTCAATTTTCGTCTTATCAGCTCGAGTGTGCACAATGGAGCGAAAAGGAAATGGTGGTGCACTATCAATTTCCAATCATTTTCTGTTGGCTGCTGGAATGTGGGAGACAAAAAAAAGTAGATGATGTAATAGACGGAGTTGGAAGTATTCGTAGAGTACGA</canonical>
            <polymorphic>ATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTAYGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGTTTTTTTAGGTTTTAGTCGCCCTGGAATTTTTTAATTCAAACCAAAATTGGGGTACCAACAATGCAATAAAAACTGGATACAAAAAAGTTTTAAATCCTTGAAATCAGCTGAAAGTAAGCTTCGAACCGGTCAAGAAAAGGTAAAAGTGCTCCAGGACTGAAGACTGAAAACCGAAGACAAACTTTTTTGGTTTTCAATTTTCGTCTTATCAGCTCGAGTGTGCACAATGGAGCGAAAAGGAAATGGTGGTGCACTATCAATTTCCAATCATTTTCTGTTGGCTGCTGGAATGTGGGAGACAAAAAAAAGTAGATGATGTAATAGACGGAGTTGGAAGTATTCGTAGAGTACGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>498 296 202 4</canonical_bands>
                <polymorphic_bands>700 296 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAGATCTTTGTTGATTTCAT</pcr_primer_p1>
		<pcr_primer_p2>GAAATTGTGCCAAATCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTC</canonical_amplicon>
		<polymorphic_amplicon>ACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTAYGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5416</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>22011</contig_pos>
        <strand>+</strand>
        <context>TRAAMATAAT[A/T]CAGATGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAAT</left_flank>
        <right_flank>CAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGTTTTTTTAGGTTTTAGTCGCCCTGGAATTTTTTAATTCAAACCAAAATTGGGGTACCAACAATGCAATAAAAACTGGATACAAAAAAGTTTTAAATCCTTGAAATCAGCTGAAAGTAAGCTTCGAACCGGTCAAGAAAAGGTAAAAGTGCTCCAGGACTGAAGACTGAAAACCGAAGACAAACTTTTTTGGTTTTCAATTTTCGTCTTATCAGCTCGAGTGTGCACAATGGAGCGAAAAGGAAATGGTGGTGCACTATCA</canonical>
            <polymorphic>TGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATWCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGTTTTTTTAGGTTTTAGTCGCCCTGGAATTTTTTAATTCAAACCAAAATTGGGGTACCAACAATGCAATAAAAACTGGATACAAAAAAGTTTTAAATCCTTGAAATCAGCTGAAAGTAAGCTTCGAACCGGTCAAGAAAAGGTAAAAGTGCTCCAGGACTGAAGACTGAAAACCGAAGACAAACTTTTTTGGTTTTCAATTTTCGTCTTATCAGCTCGAGTGTGCACAATGGAGCGAAAAGGAAATGGTGGTGCACTATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>289 242 173 162 37 36 31 30</canonical_bands>
                <polymorphic_bands>415 289 162 37 36 31 30</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>211 186 151 125 99 75 69 64 12 8</canonical_bands>
                <polymorphic_bands>311 211 151 99 75 69 64 12 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTTCGAGTTTCTCCAAGTT</pcr_primer_p1>
		<pcr_primer_p2>GACTTGAACGAGGAACAGAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTC</canonical_amplicon>
		<polymorphic_amplicon>TTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATWCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5417</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>22005</contig_pos>
        <strand>+</strand>
        <context>GAACGCTRAA[A/C]ATAATWCAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAA</left_flank>
        <right_flank>ATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGTTTTTTTAGGTTTTAGTCGCCCTGGAATTTTTTAATTCAAACCAAAATTGGGGTACCAACAATGCAATAAAAACTGGATACAAAAAAGTTTTAAATCCTTGAAATCAGCTGAAAGTAAGCTTCGAACCGGTCAAGAAAAGGTAAAAGTGCTCCAGGACTGAAGACTGAAAACCGAAGACAAACTTTTTTGGTTTTCAATTTTCGTCTTATCAGCTCGAGTGTGCACAATGGAGCGAAAAGGAAATGGTGGTGCA</canonical>
            <polymorphic>TGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAMATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGTTTTTTTAGGTTTTAGTCGCCCTGGAATTTTTTAATTCAAACCAAAATTGGGGTACCAACAATGCAATAAAAACTGGATACAAAAAAGTTTTAAATCCTTGAAATCAGCTGAAAGTAAGCTTCGAACCGGTCAAGAAAAGGTAAAAGTGCTCCAGGACTGAAGACTGAAAACCGAAGACAAACTTTTTTGGTTTTCAATTTTCGTCTTATCAGCTCGAGTGTGCACAATGGAGCGAAAAGGAAATGGTGGTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTCGAGTTTCTCCAAGTT</pcr_primer_p1>
		<pcr_primer_p2>GACTTGAACGAGGAACAGAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTC</canonical_amplicon>
		<polymorphic_amplicon>TTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAMATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5418</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>22002</contig_pos>
        <strand>+</strand>
        <context>AACGAACGCT[A/G]AAMATAATWC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCT</left_flank>
        <right_flank>AAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGTTTTTTTAGGTTTTAGTCGCCCTGGAATTTTTTAATTCAAACCAAAATTGGGGTACCAACAATGCAATAAAAACTGGATACAAAAAAGTTTTAAATCCTTGAAATCAGCTGAAAGTAAGCTTCGAACCGGTCAAGAAAAGGTAAAAGTGCTCCAGGACTGAAGACTGAAAACCGAAGACAAACTTTTTTGGTTTTCAATTTTCGTCTTATCAGCTCGAGTGTGCACAATGGAGCGAAAAGGAAATGGTGGT</canonical>
            <polymorphic>TCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTRAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGTTTTTTTAGGTTTTAGTCGCCCTGGAATTTTTTAATTCAAACCAAAATTGGGGTACCAACAATGCAATAAAAACTGGATACAAAAAAGTTTTAAATCCTTGAAATCAGCTGAAAGTAAGCTTCGAACCGGTCAAGAAAAGGTAAAAGTGCTCCAGGACTGAAGACTGAAAACCGAAGACAAACTTTTTTGGTTTTCAATTTTCGTCTTATCAGCTCGAGTGTGCACAATGGAGCGAAAAGGAAATGGTGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTCGAGTTTCTCCAAGTT</pcr_primer_p1>
		<pcr_primer_p2>GACTTGAACGAGGAACAGAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTC</canonical_amplicon>
		<polymorphic_amplicon>TTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTRAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5419</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21965</contig_pos>
        <strand>+</strand>
        <context>CTGGGATTGG[C/T]ACCAGATCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGG</left_flank>
        <right_flank>ACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGTTTTTTTAGGTTTTAGTCGCCCTGGAATTTTTTAATTCAAACCAAAATTGGGGTACCAACAATGCAATAAAAACTGGATACAAAAAAGTTTTAAATCCTTGAAATCAGCTGAAAGTAAGCTTCGAACCGGTCAAGAAAAGGTAAAAGTGCTCCAGGACTGAAGACTGAAAACCGAAGACAAACTTTTTTGGTTTTCAATTTTCGTCTTATCAGC</canonical>
            <polymorphic>TTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGYACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGTTTTTTTAGGTTTTAGTCGCCCTGGAATTTTTTAATTCAAACCAAAATTGGGGTACCAACAATGCAATAAAAACTGGATACAAAAAAGTTTTAAATCCTTGAAATCAGCTGAAAGTAAGCTTCGAACCGGTCAAGAAAAGGTAAAAGTGCTCCAGGACTGAAGACTGAAAACCGAAGACAAACTTTTTTGGTTTTCAATTTTCGTCTTATCAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>498 340 162</canonical_bands>
                <polymorphic_bands>838 162</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>182 147 106 80 79 65 65 65 47 45 38 24 19 18 12 8</canonical_bands>
                <polymorphic_bands>182 147 126 106 80 65 65 65 45 38 24 19 18 12 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTTCGAGTTTCTCCAAGTT</pcr_primer_p1>
		<pcr_primer_p2>GACTTGAACGAGGAACAGAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTC</canonical_amplicon>
		<polymorphic_amplicon>TTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGYACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5420</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21871</contig_pos>
        <strand>+</strand>
        <context>TTGATTTGAA[C/G]AAGTTCTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAA</left_flank>
        <right_flank>AAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGTTTTTTTAGGTTTTAGTCGCCCTGGAATTTTTTAATTCAAACCAAAATTGGGGTACCAACAATGCAATAAAAACTGGATACAAAAAAGTTTTAAATCCTTGAAATCAGCTGAAAGTAAGC</canonical>
            <polymorphic>CTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAASAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGTTTTTTTAGGTTTTAGTCGCCCTGGAATTTTTTAATTCAAACCAAAATTGGGGTACCAACAATGCAATAAAAACTGGATACAAAAAAGTTTTAAATCCTTGAAATCAGCTGAAAGTAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTCTCTCTTGCTCTGATG</pcr_primer_p1>
		<pcr_primer_p2>GTTGAGGATGAAATCAACAAA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAAC</canonical_amplicon>
		<polymorphic_amplicon>GCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAASAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5421</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21860</contig_pos>
        <strand>+</strand>
        <context>TCGTGTTYTT[A/G]TTGATTTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTT</left_flank>
        <right_flank>TTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGTTTTTTTAGGTTTTAGTCGCCCTGGAATTTTTTAATTCAAACCAAAATTGGGGTACCAACAATGCAATAAAAACTGGATACAAAAAAGTTTTAAATCCTTGAAATCAGC</canonical>
            <polymorphic>GGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTRTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGTTTTTTTAGGTTTTAGTCGCCCTGGAATTTTTTAATTCAAACCAAAATTGGGGTACCAACAATGCAATAAAAACTGGATACAAAAAAGTTTTAAATCCTTGAAATCAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTCTCTCTTGCTCTGATG</pcr_primer_p1>
		<pcr_primer_p2>GTTGAGGATGAAATCAACAAA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAAC</canonical_amplicon>
		<polymorphic_amplicon>GCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTRTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5422</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21857</contig_pos>
        <strand>+</strand>
        <context>TTTTCGTGTT[C/T]TTRTTGATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTT</left_flank>
        <right_flank>TTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGTTTTTTTAGGTTTTAGTCGCCCTGGAATTTTTTAATTCAAACCAAAATTGGGGTACCAACAATGCAATAAAAACTGGATACAAAAAAGTTTTAAATCCTTGAAATC</canonical>
            <polymorphic>CTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTYTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGTTTTTTTAGGTTTTAGTCGCCCTGGAATTTTTTAATTCAAACCAAAATTGGGGTACCAACAATGCAATAAAAACTGGATACAAAAAAGTTTTAAATCCTTGAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTCTCTCTTGCTCTGATG</pcr_primer_p1>
		<pcr_primer_p2>GTTGAGGATGAAATCAACAAA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAAC</canonical_amplicon>
		<polymorphic_amplicon>GCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTYTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5423</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21839</contig_pos>
        <strand>+</strand>
        <context>TATGRTTGGT[C/T]TTGAGAGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGT</left_flank>
        <right_flank>TTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGTTTTTTTAGGTTTTAGTCGCCCTGGAATTTTTTAATTCAAACCAAAATTGGGGTACCAACAATGCAATAAAAACTGGATACAAAAAAG</canonical>
            <polymorphic>ATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTYTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGTTTTTTTAGGTTTTAGTCGCCCTGGAATTTTTTAATTCAAACCAAAATTGGGGTACCAACAATGCAATAAAAACTGGATACAAAAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>500 195 94 70 43 40 29 25 4</canonical_bands>
                <polymorphic_bands>695 94 70 43 40 29 25 4</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>500 314 162 24</canonical_bands>
                <polymorphic_bands>524 314 162</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTCTGACTGGCTTATCAAAC</pcr_primer_p1>
		<pcr_primer_p2>ACTTGGAGAAACTCGAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>ATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGT</canonical_amplicon>
		<polymorphic_amplicon>ATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTYTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5424</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21833</contig_pos>
        <strand>+</strand>
        <context>ATTGAATATG[A/G]TTGGTYTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATG</left_flank>
        <right_flank>TTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGTTTTTTTAGGTTTTAGTCGCCCTGGAATTTTTTAATTCAAACCAAAATTGGGGTACCAACAATGCAATAAAAACTGGATACA</canonical>
            <polymorphic>AATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGRTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGTTTTTTTAGGTTTTAGTCGCCCTGGAATTTTTTAATTCAAACCAAAATTGGGGTACCAACAATGCAATAAAAACTGGATACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTCTGACTGGCTTATCAAAC</pcr_primer_p1>
		<pcr_primer_p2>ACTTGGAGAAACTCGAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>ATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGT</canonical_amplicon>
		<polymorphic_amplicon>ATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGRTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5425</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21803</contig_pos>
        <strand>+</strand>
        <context>CATGCTCCAA[A/G]ACAGCTTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAA</left_flank>
        <right_flank>ACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGTTTTTTTAGGTTTTAGTCGCCCTGGAATTTTTTAATTCAAACCAAAATTGGG</canonical>
            <polymorphic>AACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAARACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGTTTTTTTAGGTTTTAGTCGCCCTGGAATTTTTTAATTCAAACCAAAATTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTCTGACTGGCTTATCAAAC</pcr_primer_p1>
		<pcr_primer_p2>ACTTGGAGAAACTCGAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>ATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGT</canonical_amplicon>
		<polymorphic_amplicon>ATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAARACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5426</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21788</contig_pos>
        <strand>+</strand>
        <context>CCATCAAAGA[A/C]GTAACATGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGA</left_flank>
        <right_flank>GTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGTTTTTTTAGGTTTTAGTCGCCCTGGAATTTTTTAATT</canonical>
            <polymorphic>CAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGAMGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGTTTTTTTAGGTTTTAGTCGCCCTGGAATTTTTTAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>501 295 204</canonical_bands>
                <polymorphic_bands>705 295</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTCTGACTGGCTTATCAAAC</pcr_primer_p1>
		<pcr_primer_p2>ACTTGGAGAAACTCGAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>ATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGT</canonical_amplicon>
		<polymorphic_amplicon>ATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGAMGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5427</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21752</contig_pos>
        <strand>+</strand>
        <context>AGATKGACAT[A/T]GCTGCTTCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACAT</left_flank>
        <right_flank>GCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGT</canonical>
            <polymorphic>TCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATWGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTCTGACTGGCTTATCAAAC</pcr_primer_p1>
		<pcr_primer_p2>ACTTGGAGAAACTCGAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>ATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGT</canonical_amplicon>
		<polymorphic_amplicon>ATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATWGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5428</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21746</contig_pos>
        <strand>+</strand>
        <context>CTTCGGAGAT[G/T]GACATWGCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGAT</left_flank>
        <right_flank>GACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTT</canonical>
            <polymorphic>CAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATKGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTCTGACTGGCTTATCAAAC</pcr_primer_p1>
		<pcr_primer_p2>ACTTGGAGAAACTCGAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>ATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGT</canonical_amplicon>
		<polymorphic_amplicon>ATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATKGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5429</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21716</contig_pos>
        <strand>+</strand>
        <context>CACTRAATGG[C/T]CCAGCCTCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGG</left_flank>
        <right_flank>CCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATG</canonical>
            <polymorphic>GACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGYCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>266 206 93 72 67 51 41 39 36 33 30 21 15 15 10 5</canonical_bands>
                <polymorphic_bands>266 206 93 72 67 51 41 41 39 33 30 21 15 15 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATCTCTGACTGGCTTATCA</pcr_primer_p1>
		<pcr_primer_p2>ACTTGGAGAAACTCGAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>TCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGT</canonical_amplicon>
		<polymorphic_amplicon>TCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGYCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5430</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21710</contig_pos>
        <strand></strand>
        <context>ATCCSACACT[A/G]AATGGYCCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACT</left_flank>
        <right_flank>AATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAAT</canonical>
            <polymorphic>TGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTRAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACTCTTGGCACGTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>TATTCAATTGCTTGAGATGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>ATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATA</canonical_amplicon>
		<polymorphic_amplicon>ATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTRAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5431</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21704</contig_pos>
        <strand></strand>
        <context>GCTTCAATCC[G/C]ACACTRAATG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCC</left_flank>
        <right_flank>ACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGG</canonical>
            <polymorphic>GAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCSACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>469 242 173 37 31 30 18</canonical_bands>
                <polymorphic_bands>469 242 173 67 31 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACTCTTGGCACGTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>TATTCAATTGCTTGAGATGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>ATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATA</canonical_amplicon>
		<polymorphic_amplicon>ATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCSACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5432</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21665</contig_pos>
        <strand>+</strand>
        <context>TRRGCTCATT[C/T]TCATCTCTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATT</left_flank>
        <right_flank>TCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCG</canonical>
            <polymorphic>TTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTYTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACTCTTGGCACGTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>TATTCAATTGCTTGAGATGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>ATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATA</canonical_amplicon>
		<polymorphic_amplicon>ATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTYTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5433</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21656</contig_pos>
        <strand></strand>
        <context>AGACTTACTT[A/G]RGCTCATTYT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTT</left_flank>
        <right_flank>AGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGAC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCA</canonical>
            <polymorphic>AATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTRAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTTAAG</site>
                <isoschizomers>
                    <enzyme>AflII</enzyme>
                    <enzyme>BfrI</enzyme>
                    <enzyme>BspTI</enzyme>
                    <enzyme>Bst98I</enzyme>
                    <enzyme>MspCI</enzyme>
                    <enzyme>Vha464I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 322 176</canonical_bands>
                <polymorphic_bands>824 176</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>408 317 162 89 24</canonical_bands>
                <polymorphic_bands>570 317 89 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACTCTTGGCACGTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>TATTCAATTGCTTGAGATGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>ATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATA</canonical_amplicon>
		<polymorphic_amplicon>ATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTRAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5434</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21636</contig_pos>
        <strand></strand>
        <context>TAKKRRTTTC[A/T]WAACTGTCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTC</left_flank>
        <right_flank>AAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATT</canonical>
            <polymorphic>TCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCWAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAACGCATTTGTCTTCATA</pcr_primer_p1>
		<pcr_primer_p2>GATTGAAGCAAGAGTTTGATAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATC</canonical_amplicon>
		<polymorphic_amplicon>GAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCWAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5435</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21630</contig_pos>
        <strand></strand>
        <context>YYTTCATAKK[G/A]RTTTCWWAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGC</left_flank>
        <right_flank>ATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAA</canonical>
            <polymorphic>TCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCRATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAACGCATTTGTCTTCATA</pcr_primer_p1>
		<pcr_primer_p2>GATTGAAGCAAGAGTTTGATAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATC</canonical_amplicon>
		<polymorphic_amplicon>GAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCRATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5436</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21628</contig_pos>
        <strand></strand>
        <context>GGYYTTCATA[G/T]KRRTTTCWWA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATA</left_flank>
        <right_flank>CGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTC</canonical>
            <polymorphic>TATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAKCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAACGCATTTGTCTTCATA</pcr_primer_p1>
		<pcr_primer_p2>GATTGAAGCAAGAGTTTGATAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATC</canonical_amplicon>
		<polymorphic_amplicon>GAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAKCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5437</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21620</contig_pos>
        <strand></strand>
        <context>RAATTTYKGG[T/C]YTTCATAKKR</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGG</left_flank>
        <right_flank>TTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATC</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAGCAATATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCG</canonical>
            <polymorphic>TTGAGCAATATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGYTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAACGCATTTGTCTTCATA</pcr_primer_p1>
		<pcr_primer_p2>GATTGAAGCAAGAGTTTGATAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATC</canonical_amplicon>
		<polymorphic_amplicon>GAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGYTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5438</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21617</contig_pos>
        <strand>+</strand>
        <context>YCTRAATTTY[G/T]GGYYTTCATA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTC</left_flank>
        <right_flank>GGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTTGAGCAATATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCC</canonical>
            <polymorphic>CACTTGAGCAATATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCKGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAACGCATTTGTCTTCATA</pcr_primer_p1>
		<pcr_primer_p2>GATTGAAGCAAGAGTTTGATAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATC</canonical_amplicon>
		<polymorphic_amplicon>GAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCKGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5439</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21616</contig_pos>
        <strand>+</strand>
        <context>AYCTRAATTT[C/T]KGGYYTTCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTT</left_flank>
        <right_flank>GGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACTTGAGCAATATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTC</canonical>
            <polymorphic>TCACTTGAGCAATATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTYGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAACGCATTTGTCTTCATA</pcr_primer_p1>
		<pcr_primer_p2>GATTGAAGCAAGAGTTTGATAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATC</canonical_amplicon>
		<polymorphic_amplicon>GAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTYGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5440</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21604</contig_pos>
        <strand>+</strand>
        <context>CTCCGGTGAC[A/G]AAYCTRAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGAC</left_flank>
        <right_flank>AATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGAGAGTTCTTCACTTGAGCAATATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTA</canonical>
            <polymorphic>GGAGAGAGTTCTTCACTTGAGCAATATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACRAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>500 262 147 48 31 12</canonical_bands>
                <polymorphic_bands>512 262 147 48 31</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 262 207 31</canonical_bands>
                <polymorphic_bands>707 262 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAACGCATTTGTCTTCATA</pcr_primer_p1>
		<pcr_primer_p2>GATTGAAGCAAGAGTTTGATAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATC</canonical_amplicon>
		<polymorphic_amplicon>GAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACRAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5441</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21568</contig_pos>
        <strand>+</strand>
        <context>AACGCTCAAA[A/G]GCAATACTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAA</left_flank>
        <right_flank>GCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGAACTGAAGATCCAGAGTGGATGGTTCCCATGTGGAGAGAGTTCTTCACTTGAGCAATATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTC</canonical>
            <polymorphic>CTGGAACTGAAGATCCAGAGTGGATGGTTCCCATGTGGAGAGAGTTCTTCACTTGAGCAATATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAARGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAACGCATTTGTCTTCATA</pcr_primer_p1>
		<pcr_primer_p2>GATTGAAGCAAGAGTTTGATAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATC</canonical_amplicon>
		<polymorphic_amplicon>GAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAARGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5442</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21523</contig_pos>
        <strand>+</strand>
        <context>GAACAAACTT[A/G]GCGAASACTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTT</left_flank>
        <right_flank>GCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTAGGTTGGTGGATATTTCTCAGTTTCCATTTCATTGAGAATAGCTGGAACTGAAGATCCAGAGTGGATGGTTCCCATGTGGAGAGAGTTCTTCACTTGAGCAATATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAA</canonical>
            <polymorphic>AGTAGGTTGGTGGATATTTCTCAGTTTCCATTTCATTGAGAATAGCTGGAACTGAAGATCCAGAGTGGATGGTTCCCATGTGGAGAGAGTTCTTCACTTGAGCAATATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTRGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAACGCATTTGTCTTCATA</pcr_primer_p1>
		<pcr_primer_p2>GATTGAAGCAAGAGTTTGATAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATC</canonical_amplicon>
		<polymorphic_amplicon>GAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTRGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5443</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21492</contig_pos>
        <strand>+</strand>
        <context>TGAGARAASA[A/G]GTCRGTTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGA</left_flank>
        <right_flank>GTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAATCCTTGAGTGAATTTGTTGAGTTTGAAGTAGGTTGGTGGATATTTCTCAGTTTCCATTTCATTGAGAATAGCTGGAACTGAAGATCCAGAGTGGATGGTTCCCATGTGGAGAGAGTTCTTCACTTGAGCAATATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCA</canonical>
            <polymorphic>TGGAATCCTTGAGTGAATTTGTTGAGTTTGAAGTAGGTTGGTGGATATTTCTCAGTTTCCATTTCATTGAGAATAGCTGGAACTGAAGATCCAGAGTGGATGGTTCCCATGTGGAGAGAGTTCTTCACTTGAGCAATATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGARGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATAACAGCTTTCATATCATTG</pcr_primer_p1>
		<pcr_primer_p2>AGACTCTCCCGTGCTAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCT</canonical_amplicon>
		<polymorphic_amplicon>CAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGARGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5445</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>71117</contig_pos>
        <strand>+</strand>
        <context>CTTTCTCTCC[A/G]TTATCTCTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTACTCTAGTCTTGACTCCTGATTCTGATTCTGAATGCACTTTCTCTCC</left_flank>
        <right_flank>TTATCTCTTGGTTTCTTTCTCTTTTCTCTCTCGTTATTTAAGAAAGTGAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCAAATTTTTTACATCTTTCAAGAGAATCGAGATAATTGAGCTCAAAGTTTACGGTTTGGGTGGGCTTCCATTAGAGGATATACGGTAGCTTGAACTGAAACTTTTTGAGAATATTGAGTAAAAACCTTGATTTTTATTTTATTTGTATTCCGAATATAGGTTTCAAGTGTTTGCAACTTTTCAAACCGTTTCCGCTAAGATAATTTGAACCTTGTCAAGCTTGTCAAGTTTTATTGTTCTTATCTGTATAGTATGCCTGATCTAGATAATGACATTCATCTCGAGGCTTAATTTCGTTCAAGGTCTCACACTCTCCCTGATTCTCTCATTATGTCTACAGTAATCCTGTTCTCACGTCAGATCCTTTCTATCTCATTTCTCTCTCTGATTTTCTCTTTCTGTGTTCATTCTTGTACTTTTCCAATATCCCGAAATTTCACTTTTTCTTCTACTCTAGTCTTGACTCCTGATTCTGATTCTGAATGCACTTTCTCTCCGTTATCTCTTGGTTTCTTTCTCTTTTCTCTCTCGTTATTTAAGAAAGTGATAGTTGCGGACAACGTCTGTATCATTGCTTGTCAGAGACGAGGGAGACACCTCAAGAAACCAGATATAAGGAAACATGTTAGCCGGTACGTGATTCGAGATTGTTGAAAAAAAGAAAGATGGGATTATAGAGGAAGAATGATGGATTACGCAAGGCTCTATTAGAAACAGATACCAATGGATCAGTTTATAGTTTTTGTTCCTGGAAAACTTTACGGATTTCATAACTAGTCATTCAATTCACCACCAAGCTCTTGTTTAAATCCCAGTATTTGAAAGACCATGGATTCAATGAATCAAGTGTTTCATAAATCTAATAATTGAATTCTTATAGACCCCGTAGAATCTCAGAATGATGGGTTTCAAGAGCCTTAAGTATCTGAATATTGGATAGAACTAGTTCTGAAAATTTAAAATTAATATCTGAGCTTCAGATTCTTAGTTTTTGATTC</canonical>
            <polymorphic>GCCAAATTTTTTACATCTTTCAAGAGAATCGAGATAATTGAGCTCAAAGTTTACGGTTTGGGTGGGCTTCCATTAGAGGATATACGGTAGCTTGAACTGAAACTTTTTGAGAATATTGAGTAAAAACCTTGATTTTTATTTTATTTGTATTCCGAATATAGGTTTCAAGTGTTTGCAACTTTTCAAACCGTTTCCGCTAAGATAATTTGAACCTTGTCAAGCTTGTCAAGTTTTATTGTTCTTATCTGTATAGTATGCCTGATCTAGATAATGACATTCATCTCGAGGCTTAATTTCGTTCAAGGTCTCACACTCTCCCTGATTCTCTCATTATGTCTACAGTAATCCTGTTCTCACGTCAGATCCTTTCTATCTCATTTCTCTCTCTGATTTTCTCTTTCTGTGTTCATTCTTGTACTTTTCCAATATCCCGAAATTTCACTTTTTCTTCTACTCTAGTCTTGACTCCTGATTCTGATTCTGAATGCACTTTCTCTCCRTTATCTCTTGGTTTCTTTCTCTTTTCTCTCTCGTTATTTAAGAAAGTGATAGTTGCGGACAACGTCTGTATCATTGCTTGTCAGAGACGAGGGAGACACCTCAAGAAACCAGATATAAGGAAACATGTTAGCCGGTACGTGATTCGAGATTGTTGAAAAAAAGAAAGATGGGATTATAGAGGAAGAATGATGGATTACGCAAGGCTCTATTAGAAACAGATACCAATGGATCAGTTTATAGTTTTTGTTCCTGGAAAACTTTACGGATTTCATAACTAGTCATTCAATTCACCACCAAGCTCTTGTTTAAATCCCAGTATTTGAAAGACCATGGATTCAATGAATCAAGTGTTTCATAAATCTAATAATTGAATTCTTATAGACCCCGTAGAATCTCAGAATGATGGGTTTCAAGAGCCTTAAGTATCTGAATATTGGATAGAACTAGTTCTGAAAATTTAAAATTAATATCTGAGCTTCAGATTCTTAGTTTTTGATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTTCTCTCTCTGATTTTCTC</pcr_primer_p1>
		<pcr_primer_p2>TTTCCTTATATCTGGTTTCTTGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCATTTCTCTCTCTGATTTTCTCTTTCTGTGTTCATTCTTGTACTTTTCCAATATCCCGAAATTTCACTTTTTCTTCTACTCTAGTCTTGACTCCTGATTCTGATTCTGAATGCACTTTCTCTCCGTTATCTCTTGGTTTCTTTCTCTTTTCTCTCTCGTTATTTAAGAAAGTGATAGTTGCGGACAACGTCTGTATCATTGCTTGTCAGAGACGAGGGAGACACCTCAAGAAACCAGATATAAGGAAA</canonical_amplicon>
		<polymorphic_amplicon>TCATTTCTCTCTCTGATTTTCTCTTTCTGTGTTCATTCTTGTACTTTTCCAATATCCCGAAATTTCACTTTTTCTTCTACTCTAGTCTTGACTCCTGATTCTGATTCTGAATGCACTTTCTCTCCRTTATCTCTTGGTTTCTTTCTCTTTTCTCTCTCGTTATTTAAGAAAGTGATAGTTGCGGACAACGTCTGTATCATTGCTTGTCAGAGACGAGGGAGACACCTCAAGAAACCAGATATAAGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5446</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>71244</contig_pos>
        <strand>+</strand>
        <context>AAGGAAACAT[A/G]TTAGCCGGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTGTCAGAGACGAGGGAGACACCTCAAGAAACCAGATATAAGGAAACAT</left_flank>
        <right_flank>TTAGCCGGTACGTGATTCGAGATTGTTGAAAAAAAGAAAGATGGGATTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTGATTTTTATTTTATTTGTATTCCGAATATAGGTTTCAAGTGTTTGCAACTTTTCAAACCGTTTCCGCTAAGATAATTTGAACCTTGTCAAGCTTGTCAAGTTTTATTGTTCTTATCTGTATAGTATGCCTGATCTAGATAATGACATTCATCTCGAGGCTTAATTTCGTTCAAGGTCTCACACTCTCCCTGATTCTCTCATTATGTCTACAGTAATCCTGTTCTCACGTCAGATCCTTTCTATCTCATTTCTCTCTCTGATTTTCTCTTTCTGTGTTCATTCTTGTACTTTTCCAATATCCCGAAATTTCACTTTTTCTTCTACTCTAGTCTTGACTCCTGATTCTGATTCTGAATGCACTTTCTCTCCGTTATCTCTTGGTTTCTTTCTCTTTTCTCTCTCGTTATTTAAGAAAGTGATAGTTGCGGACAACGTCTGTATCATTGCTTGTCAGAGACGAGGGAGACACCTCAAGAAACCAGATATAAGGAAACATGTTAGCCGGTACGTGATTCGAGATTGTTGAAAAAAAGAAAGATGGGATTATAGAGGAAGAATGATGGATTACGCAAGGCTCTATTAGAAACAGATACCAATGGATCAGTTTATAGTTTTTGTTCCTGGAAAACTTTACGGATTTCATAACTAGTCATTCAATTCACCACCAAGCTCTTGTTTAAATCCCAGTATTTGAAAGACCATGGATTCAATGAATCAAGTGTTTCATAAATCTAATAATTGAATTCTTATAGACCCCGTAGAATCTCAGAATGATGGGTTTCAAGAGCCTTAAGTATCTGAATATTGGATAGAACTAGTTCTGAAAATTTAAAATTAATATCTGAGCTTCAGATTCTTAGTTTTTGATTCTGCTGATCACGAACTGTCGAATTTCTGAATTAAATAGATTTTAAATAAATGTGACGTTAGCAGGATAAAATATCTTGAATATATTTAGATATCTCTGAAAGTTTCAGAATTCGTTCATTAGTTACAG</canonical>
            <polymorphic>CTTGATTTTTATTTTATTTGTATTCCGAATATAGGTTTCAAGTGTTTGCAACTTTTCAAACCGTTTCCGCTAAGATAATTTGAACCTTGTCAAGCTTGTCAAGTTTTATTGTTCTTATCTGTATAGTATGCCTGATCTAGATAATGACATTCATCTCGAGGCTTAATTTCGTTCAAGGTCTCACACTCTCCCTGATTCTCTCATTATGTCTACAGTAATCCTGTTCTCACGTCAGATCCTTTCTATCTCATTTCTCTCTCTGATTTTCTCTTTCTGTGTTCATTCTTGTACTTTTCCAATATCCCGAAATTTCACTTTTTCTTCTACTCTAGTCTTGACTCCTGATTCTGATTCTGAATGCACTTTCTCTCCGTTATCTCTTGGTTTCTTTCTCTTTTCTCTCTCGTTATTTAAGAAAGTGATAGTTGCGGACAACGTCTGTATCATTGCTTGTCAGAGACGAGGGAGACACCTCAAGAAACCAGATATAAGGAAACATRTTAGCCGGTACGTGATTCGAGATTGTTGAAAAAAAGAAAGATGGGATTATAGAGGAAGAATGATGGATTACGCAAGGCTCTATTAGAAACAGATACCAATGGATCAGTTTATAGTTTTTGTTCCTGGAAAACTTTACGGATTTCATAACTAGTCATTCAATTCACCACCAAGCTCTTGTTTAAATCCCAGTATTTGAAAGACCATGGATTCAATGAATCAAGTGTTTCATAAATCTAATAATTGAATTCTTATAGACCCCGTAGAATCTCAGAATGATGGGTTTCAAGAGCCTTAAGTATCTGAATATTGGATAGAACTAGTTCTGAAAATTTAAAATTAATATCTGAGCTTCAGATTCTTAGTTTTTGATTCTGCTGATCACGAACTGTCGAATTTCTGAATTAAATAGATTTTAAATAAATGTGACGTTAGCAGGATAAAATATCTTGAATATATTTAGATATCTCTGAAAGTTTCAGAATTCGTTCATTAGTTACAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>497 297 206</canonical_bands>
                <polymorphic_bands>703 297</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTTGGTTTCTTTCTCTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>CCAGGAACAAAAACTATAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTTGGTTTCTTTCTCTTTTCTCTCTCGTTATTTAAGAAAGTGATAGTTGCGGACAACGTCTGTATCATTGCTTGTCAGAGACGAGGGAGACACCTCAAGAAACCAGATATAAGGAAACATGTTAGCCGGTACGTGATTCGAGATTGTTGAAAAAAAGAAAGATGGGATTATAGAGGAAGAATGATGGATTACGCAAGGCTCTATTAGAAACAGATACCAATGGATCAGTTTATAGTTTTTGTTCCTGG</canonical_amplicon>
		<polymorphic_amplicon>CTCTTGGTTTCTTTCTCTTTTCTCTCTCGTTATTTAAGAAAGTGATAGTTGCGGACAACGTCTGTATCATTGCTTGTCAGAGACGAGGGAGACACCTCAAGAAACCAGATATAAGGAAACATRTTAGCCGGTACGTGATTCGAGATTGTTGAAAAAAAGAAAGATGGGATTATAGAGGAAGAATGATGGATTACGCAAGGCTCTATTAGAAACAGATACCAATGGATCAGTTTATAGTTTTTGTTCCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5447</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>85900</contig_pos>
        <strand>+</strand>
        <context>CAACCAACAA[A/G]TCAGGTTCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCACGATCTGTCCACACGATTCTTAGTTCAGAAAGAACAACCAACAA</left_flank>
        <right_flank>TCAGGTTCCTGCTTCTGAATATAGTTTCTCCACGACCAAACATGTCGTTG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGACGGATGATACCCTTAATATGCTCCTCATTTCCACGTAGGTATGCCTCCATCAGAAGAGAGATACGCCGGTATTCCTCGTTATTTGTTGCACAGTCTCTGGAACTTTTGATTCGTGTTTCTCTGAGCAATTGAATCTATACTTACTTCAATCGACAAATTTCTGAACGAAGCAGCCAAAATAGTCTATGTCCGATACGGTAACTGCTGAGTGCTCGTGTCAACAACATCATTCCAACTTCTGAATAAGCACGTGGTTCGTATTTCAATGCCTGAATGAGTGGGAGAAGGAAGAGATGAACATTGAACTGGCTGAGTTGATCATTCAACTTGTTAACAGCGAACTTTCGAATCACTCGATCAGTACATCGTTTTCCAAGTAGAGTCAATGCAGCAGCCACACTTGGAGCCTTCCATGTCTCAAGCATCACATAGAGTTCCGAAAAGTTTTCACGATCTGTCCACACGATTCTTAGTTCAGAAAGAACAACCAACAAGTCAGGTTCCTGCTTCTGAATATAGTTTCTCCACGACCAAACATGTCGTTGCTCAGAATCGTCTAGAATCACTCCAGATTCATGTTTTTTCACCAAATCCTGCAGCTTCTTATATCCTGGATCTCCAATACATGCCTCGTAATCGTCGCCAACAATTTCTACAGTGTCTGACCAACTTATTCGATGATCCACAAGATACTTGTATTGCGCTTCATTTGGCATTTTCACTCGTCGACCATGACTGGATATTTCAACGGTTACTGACAACGATGTTCCTATTTTCGCACCATTGTGACCAATTCTACTTCTGTTCGCTGACGGTTCTGGCCCCCAGAGGTTCAGTTTTATCTGTCCTTGCCGTAGTTCATCTCGCCAGTCGCTGAGAGAAATGTTCACCCATCCGAGTTCAATTTCTTCTTTCATTTTTGTAGTCTTCATTGAATAGACTCGAACACTTAATATAGCTGATGGTGGCATATCCTTCATGTACAAGTCGAATGT</canonical>
            <polymorphic>CTTGACGGATGATACCCTTAATATGCTCCTCATTTCCACGTAGGTATGCCTCCATCAGAAGAGAGATACGCCGGTATTCCTCGTTATTTGTTGCACAGTCTCTGGAACTTTTGATTCGTGTTTCTCTGAGCAATTGAATCTATACTTACTTCAATCGACAAATTTCTGAACGAAGCAGCCAAAATAGTCTATGTCCGATACGGTAACTGCTGAGTGCTCGTGTCAACAACATCATTCCAACTTCTGAATAAGCACGTGGTTCGTATTTCAATGCCTGAATGAGTGGGAGAAGGAAGAGATGAACATTGAACTGGCTGAGTTGATCATTCAACTTGTTAACAGCGAACTTTCGAATCACTCGATCAGTACATCGTTTTCCAAGTAGAGTCAATGCAGCAGCCACACTTGGAGCCTTCCATGTCTCAAGCATCACATAGAGTTCCGAAAAGTTTTCACGATCTGTCCACACGATTCTTAGTTCAGAAAGAACAACCAACAARTCAGGTTCCTGCTTCTGAATATAGTTTCTCCACGACCAAACATGTCGTTGCTCAGAATCGTCTAGAATCACTCCAGATTCATGTTTTTTCACCAAATCCTGCAGCTTCTTATATCCTGGATCTCCAATACATGCCTCGTAATCGTCGCCAACAATTTCTACAGTGTCTGACCAACTTATTCGATGATCCACAAGATACTTGTATTGCGCTTCATTTGGCATTTTCACTCGTCGACCATGACTGGATATTTCAACGGTTACTGACAACGATGTTCCTATTTTCGCACCATTGTGACCAATTCTACTTCTGTTCGCTGACGGTTCTGGCCCCCAGAGGTTCAGTTTTATCTGTCCTTGCCGTAGTTCATCTCGCCAGTCGCTGAGAGAAATGTTCACCCATCCGAGTTCAATTTCTTCTTTCATTTTTGTAGTCTTCATTGAATAGACTCGAACACTTAATATAGCTGATGGTGGCATATCCTTCATGTACAAGTCGAATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCACATAGAGTTCCGAAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTGGTCAGACACTGTAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCACATAGAGTTCCGAAAAGTTTTCACGATCTGTCCACACGATTCTTAGTTCAGAAAGAACAACCAACAAGTCAGGTTCCTGCTTCTGAATATAGTTTCTCCACGACCAAACATGTCGTTGCTCAGAATCGTCTAGAATCACTCCAGATTCATGTTTTTTCACCAAATCCTGCAGCTTCTTATATCCTGGATCTCCAATACATGCCTCGTAATCGTCGCCAACAATTTCTACAGTGTCTGACCAACTT</canonical_amplicon>
		<polymorphic_amplicon>ATCACATAGAGTTCCGAAAAGTTTTCACGATCTGTCCACACGATTCTTAGTTCAGAAAGAACAACCAACAARTCAGGTTCCTGCTTCTGAATATAGTTTCTCCACGACCAAACATGTCGTTGCTCAGAATCGTCTAGAATCACTCCAGATTCATGTTTTTTCACCAAATCCTGCAGCTTCTTATATCCTGGATCTCCAATACATGCCTCGTAATCGTCGCCAACAATTTCTACAGTGTCTGACCAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5448</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>171398</contig_pos>
        <strand>+</strand>
        <context>AACACAGATA[C/T]CAAAAAAGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCACTCAGATCATGATAATAGTTGGCCCGTGCCGTCGTGGAACACAGATA</left_flank>
        <right_flank>CAAAAAAGTGTATACCGATATGGGAACGGAGTGGGTGCTTCTTCGGGTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTGAGAGAGACCGAGGATGTTGAAGAGTATAGGAGAGCGATTGGGGCGTTAAAAGTGCAACCGAAGTGCACACGTCAGTCGAAAGTGGTATAAAAATATGTTGAGACTGGTGACTGGGACAGAAGAAACAGAAGATGGTGTTTCTGTCGAGGACGTCAATTGGAGAACGCAATCTTCTTTTTACGCTTGATGAAGATATCAGGCAACTCGAAGGGACAGATAAGAAGAGCGTCGACCGAAATGTACTTTTTTATCAGCAGTTGTTCAGCAAAGAGGAGTGAATCAACGTCGATTGTGCAACTTTGTAATTGAAGAGAATATTTCGGTGAAGAGGAAAATATATATTGATTACGGTAGAAGAGGTAGACGAATTAATAGTTTTGAGAGATGAATAAGAAGAGGTAGTTCAGTAGTGAGGTAGTTCAAGTTATAGATACAAAATGATTCCACTCAGATCATGATAATAGTTGGCCCGTGCCGTCGTGGAACACAGATATCAAAAAAGTGTATACCGATATGGGAACGGAGTGGGTGCTTCTTCGGGTTGCTTCTACTGACTGACTGGAAGCTTCGCCGACAAGTGAGTGGCGAGAGAACGACAATCAACCGTGGCTGGGGATAGAGAGCGCGCGACGACACAACAACCGAATAGTGGGCGGGACCTTCCTAGGAGTGAGCGCGGGGCGCGCGCGACCGACCAAGCGAATGAGCGTGCGTCGCGCTCCAAAACAACAGCGCCACGCATGGAGGCCGCAGGCACGACTTATAGTGCATCTCCTCCGGCGCCTCGAACATCATTGCCGCCTTATGCGAAAAGTGAGACCCAGAGAATAAGCGAAAAGCGCTGTGGGCGCCTCCAAGTACACAACACACAGCAGGGATAATAAGAGAGATGTTGCGAACAACGTTCTCTCGACCCTCTCGCGCCTCCAGCTCCTCTCGTCTCGATTTCTACTTCTCCACTTACTCTGTCCGTTCGCGCCAGAGAAGCGAAGGA</canonical>
            <polymorphic>AAACTGAGAGAGACCGAGGATGTTGAAGAGTATAGGAGAGCGATTGGGGCGTTAAAAGTGCAACCGAAGTGCACACGTCAGTCGAAAGTGGTATAAAAATATGTTGAGACTGGTGACTGGGACAGAAGAAACAGAAGATGGTGTTTCTGTCGAGGACGTCAATTGGAGAACGCAATCTTCTTTTTACGCTTGATGAAGATATCAGGCAACTCGAAGGGACAGATAAGAAGAGCGTCGACCGAAATGTACTTTTTTATCAGCAGTTGTTCAGCAAAGAGGAGTGAATCAACGTCGATTGTGCAACTTTGTAATTGAAGAGAATATTTCGGTGAAGAGGAAAATATATATTGATTACGGTAGAAGAGGTAGACGAATTAATAGTTTTGAGAGATGAATAAGAAGAGGTAGTTCAGTAGTGAGGTAGTTCAAGTTATAGATACAAAATGATTCCACTCAGATCATGATAATAGTTGGCCCGTGCCGTCGTGGAACACAGATAYCAAAAAAGTGTATACCGATATGGGAACGGAGTGGGTGCTTCTTCGGGTTGCTTCTACTGACTGACTGGAAGCTTCGCCGACAAGTGAGTGGCGAGAGAACGACAATCAACCGTGGCTGGGGATAGAGAGCGCGCGACGACACAACAACCGAATAGTGGGCGGGACCTTCCTAGGAGTGAGCGCGGGGCGCGCGCGACCGACCAAGCGAATGAGCGTGCGTCGCGCTCCAAAACAACAGCGCCACGCATGGAGGCCGCAGGCACGACTTATAGTGCATCTCCTCCGGCGCCTCGAACATCATTGCCGCCTTATGCGAAAAGTGAGACCCAGAGAATAAGCGAAAAGCGCTGTGGGCGCCTCCAAGTACACAACACACAGCAGGGATAATAAGAGAGATGTTGCGAACAACGTTCTCTCGACCCTCTCGCGCCTCCAGCTCCTCTCGTCTCGATTTCTACTTCTCCACTTACTCTGTCCGTTCGCGCCAGAGAAGCGAAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>502 298 200</canonical_bands>
                <polymorphic_bands>800 200</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATTTCGGTGAAGAGGAAAATA</pcr_primer_p1>
		<pcr_primer_p2>AAGCTTCCAGTCAGTCAGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ATATTTCGGTGAAGAGGAAAATATATATTGATTACGGTAGAAGAGGTAGACGAATTAATAGTTTTGAGAGATGAATAAGAAGAGGTAGTTCAGTAGTGAGGTAGTTCAAGTTATAGATACAAAATGATTCCACTCAGATCATGATAATAGTTGGCCCGTGCCGTCGTGGAACACAGATATCAAAAAAGTGTATACCGATATGGGAACGGAGTGGGTGCTTCTTCGGGTTGCTTCTACTGACTGACTGGAAGCTT</canonical_amplicon>
		<polymorphic_amplicon>ATATTTCGGTGAAGAGGAAAATATATATTGATTACGGTAGAAGAGGTAGACGAATTAATAGTTTTGAGAGATGAATAAGAAGAGGTAGTTCAGTAGTGAGGTAGTTCAAGTTATAGATACAAAATGATTCCACTCAGATCATGATAATAGTTGGCCCGTGCCGTCGTGGAACACAGATAYCAAAAAAGTGTATACCGATATGGGAACGGAGTGGGTGCTTCTTCGGGTTGCTTCTACTGACTGACTGGAAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5480</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>179883</contig_pos>
        <strand>+</strand>
        <context>CCTTGCTCTT[A/T]AATTATGTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCAAAATGTCCGGTTTTGAACTGTCCGAATTTTGAAACGCCTTGCTCTT</left_flank>
        <right_flank>AATTATGTCGGAGCTAAACTTACGGGGTGCCGTAGCATTCTGCTTCCTCT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATCTTTTACTGGGACCAGGCGAGTCATCAATTGTATCCGTCTCGCCATCTTCACTTTTACCATGACTGTGCCTCAATCCGGATCCCGAAAAACCATTATCATCATCTGAATTTTCTTTTGCGTTGCATTCGTTGCTAGTTGACCTGAAAAACAGACAAATGACAAGTTTCCAAAACAAAGTGATGAAAGCAATATCCAGCTGAAACACGGCTCAGCTTAGGGATGATTGAAATATTTGAAACATTTTCGGACTTTTCAAAACCAGAAATTTTCGCAACCGTGATAATGCAGTCGAATTGATAGGTTTTAGAGTACAACAATGGTGCTATGGCTTTCGGATGGTTTTTATTTCTAATAGAACACTACCAAAAATTCGAAAAATTTACATTTTAAAAATGTATTTGGTCAGAAAACCATTTTGTTGTCTTGTCTCTGTATTATCAGAATGTCAAAATGTCCGGTTTTGAACTGTCCGAATTTTGAAACGCCTTGCTCTTAAATTATGTCGGAGCTAAACTTACGGGGTGCCGTAGCATTCTGCTTCCTCTTGATCCTTGTGCTGTTCTTCCACTGATGATTTCGATTCTCTCGCGCTCTTATGACCTTGTGATAAAGAACCCGATGGCGTCGCATGAGCTGTATCTGTGTTTCTTGATAGACCATCCGTTTTTTCAGCTTCAGCTTGTTCCTCGGCTTGTCTCTTTTTTTCGGCTGCTTCCTGTTTTCGTCTTTCAGTGGCCTCTACGATAAAATCGTATAACTTATCAGGGCAATAGTCCACTGCAGTTGATTGCTCTATGTAGTGACTGTAACGACTGTAATGAAGTTTTATTTAGTTATGATGAAACATTGAGAATATATTTCAAATCTATTGAAGCCCTTTTTCAAACATTTATTTCTATAATGCTTGAGATACTAGGCGCGAGATAATGATCCTAATATTTCAGGGGACTACATACCACATGTTCTTCTCGATCTCACAAATGATGTGGGTGCAA</canonical>
            <polymorphic>AGATCTTTTACTGGGACCAGGCGAGTCATCAATTGTATCCGTCTCGCCATCTTCACTTTTACCATGACTGTGCCTCAATCCGGATCCCGAAAAACCATTATCATCATCTGAATTTTCTTTTGCGTTGCATTCGTTGCTAGTTGACCTGAAAAACAGACAAATGACAAGTTTCCAAAACAAAGTGATGAAAGCAATATCCAGCTGAAACACGGCTCAGCTTAGGGATGATTGAAATATTTGAAACATTTTCGGACTTTTCAAAACCAGAAATTTTCGCAACCGTGATAATGCAGTCGAATTGATAGGTTTTAGAGTACAACAATGGTGCTATGGCTTTCGGATGGTTTTTATTTCTAATAGAACACTACCAAAAATTCGAAAAATTTACATTTTAAAAATGTATTTGGTCAGAAAACCATTTTGTTGTCTTGTCTCTGTATTATCAGAATGTCAAAATGTCCGGTTTTGAACTGTCCGAATTTTGAAACGCCTTGCTCTTWAATTATGTCGGAGCTAAACTTACGGGGTGCCGTAGCATTCTGCTTCCTCTTGATCCTTGTGCTGTTCTTCCACTGATGATTTCGATTCTCTCGCGCTCTTATGACCTTGTGATAAAGAACCCGATGGCGTCGCATGAGCTGTATCTGTGTTTCTTGATAGACCATCCGTTTTTTCAGCTTCAGCTTGTTCCTCGGCTTGTCTCTTTTTTTCGGCTGCTTCCTGTTTTCGTCTTTCAGTGGCCTCTACGATAAAATCGTATAACTTATCAGGGCAATAGTCCACTGCAGTTGATTGCTCTATGTAGTGACTGTAACGACTGTAATGAAGTTTTATTTAGTTATGATGAAACATTGAGAATATATTTCAAATCTATTGAAGCCCTTTTTCAAACATTTATTTCTATAATGCTTGAGATACTAGGCGCGAGATAATGATCCTAATATTTCAGGGGACTACATACCACATGTTCTTCTCGATCTCACAAATGATGTGGGTGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 392 106</canonical_bands>
                <polymorphic_bands>608 392</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAACCATTTTGTTGTCTTGT</pcr_primer_p1>
		<pcr_primer_p2>ATCAAGAAACACAGATACAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAAACCATTTTGTTGTCTTGTCTCTGTATTATCAGAATGTCAAAATGTCCGGTTTTGAACTGTCCGAATTTTGAAACGCCTTGCTCTTAAATTATGTCGGAGCTAAACTTACGGGGTGCCGTAGCATTCTGCTTCCTCTTGATCCTTGTGCTGTTCTTCCACTGATGATTTCGATTCTCTCGCGCTCTTATGACCTTGTGATAAAGAACCCGATGGCGTCGCATGAGCTGTATCTGTGTTTCTTGAT</canonical_amplicon>
		<polymorphic_amplicon>GAAAACCATTTTGTTGTCTTGTCTCTGTATTATCAGAATGTCAAAATGTCCGGTTTTGAACTGTCCGAATTTTGAAACGCCTTGCTCTTWAATTATGTCGGAGCTAAACTTACGGGGTGCCGTAGCATTCTGCTTCCTCTTGATCCTTGTGCTGTTCTTCCACTGATGATTTCGATTCTCTCGCGCTCTTATGACCTTGTGATAAAGAACCCGATGGCGTCGCATGAGCTGTATCTGTGTTTCTTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5481</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>179835</contig_pos>
        <strand>+</strand>
        <context>ATCAGAATGT[C/T]AAAATGTCCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTGGTCAGAAAACCATTTTGTTGTCTTGTCTCTGTATTATCAGAATGT</left_flank>
        <right_flank>AAAATGTCCGGTTTTGAACTGTCCGAATTTTGAAACGCCTTGCTCTTAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCGCCGTTCGACTTTTCTGGTTCCTCTCTTTGTTTACGCTCCGAATCAGATCTTTTACTGGGACCAGGCGAGTCATCAATTGTATCCGTCTCGCCATCTTCACTTTTACCATGACTGTGCCTCAATCCGGATCCCGAAAAACCATTATCATCATCTGAATTTTCTTTTGCGTTGCATTCGTTGCTAGTTGACCTGAAAAACAGACAAATGACAAGTTTCCAAAACAAAGTGATGAAAGCAATATCCAGCTGAAACACGGCTCAGCTTAGGGATGATTGAAATATTTGAAACATTTTCGGACTTTTCAAAACCAGAAATTTTCGCAACCGTGATAATGCAGTCGAATTGATAGGTTTTAGAGTACAACAATGGTGCTATGGCTTTCGGATGGTTTTTATTTCTAATAGAACACTACCAAAAATTCGAAAAATTTACATTTTAAAAATGTATTTGGTCAGAAAACCATTTTGTTGTCTTGTCTCTGTATTATCAGAATGTCAAAATGTCCGGTTTTGAACTGTCCGAATTTTGAAACGCCTTGCTCTTAAATTATGTCGGAGCTAAACTTACGGGGTGCCGTAGCATTCTGCTTCCTCTTGATCCTTGTGCTGTTCTTCCACTGATGATTTCGATTCTCTCGCGCTCTTATGACCTTGTGATAAAGAACCCGATGGCGTCGCATGAGCTGTATCTGTGTTTCTTGATAGACCATCCGTTTTTTCAGCTTCAGCTTGTTCCTCGGCTTGTCTCTTTTTTTCGGCTGCTTCCTGTTTTCGTCTTTCAGTGGCCTCTACGATAAAATCGTATAACTTATCAGGGCAATAGTCCACTGCAGTTGATTGCTCTATGTAGTGACTGTAACGACTGTAATGAAGTTTTATTTAGTTATGATGAAACATTGAGAATATATTTCAAATCTATTGAAGCCCTTTTTCAAACATTTATTTCTATAATGCTTGAGATACTAGGCGCGAGATAATGATCCTAATATTTCAGGGG</canonical>
            <polymorphic>TCCGCCGTTCGACTTTTCTGGTTCCTCTCTTTGTTTACGCTCCGAATCAGATCTTTTACTGGGACCAGGCGAGTCATCAATTGTATCCGTCTCGCCATCTTCACTTTTACCATGACTGTGCCTCAATCCGGATCCCGAAAAACCATTATCATCATCTGAATTTTCTTTTGCGTTGCATTCGTTGCTAGTTGACCTGAAAAACAGACAAATGACAAGTTTCCAAAACAAAGTGATGAAAGCAATATCCAGCTGAAACACGGCTCAGCTTAGGGATGATTGAAATATTTGAAACATTTTCGGACTTTTCAAAACCAGAAATTTTCGCAACCGTGATAATGCAGTCGAATTGATAGGTTTTAGAGTACAACAATGGTGCTATGGCTTTCGGATGGTTTTTATTTCTAATAGAACACTACCAAAAATTCGAAAAATTTACATTTTAAAAATGTATTTGGTCAGAAAACCATTTTGTTGTCTTGTCTCTGTATTATCAGAATGTYAAAATGTCCGGTTTTGAACTGTCCGAATTTTGAAACGCCTTGCTCTTAAATTATGTCGGAGCTAAACTTACGGGGTGCCGTAGCATTCTGCTTCCTCTTGATCCTTGTGCTGTTCTTCCACTGATGATTTCGATTCTCTCGCGCTCTTATGACCTTGTGATAAAGAACCCGATGGCGTCGCATGAGCTGTATCTGTGTTTCTTGATAGACCATCCGTTTTTTCAGCTTCAGCTTGTTCCTCGGCTTGTCTCTTTTTTTCGGCTGCTTCCTGTTTTCGTCTTTCAGTGGCCTCTACGATAAAATCGTATAACTTATCAGGGCAATAGTCCACTGCAGTTGATTGCTCTATGTAGTGACTGTAACGACTGTAATGAAGTTTTATTTAGTTATGATGAAACATTGAGAATATATTTCAAATCTATTGAAGCCCTTTTTCAAACATTTATTTCTATAATGCTTGAGATACTAGGCGCGAGATAATGATCCTAATATTTCAGGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGGATGGTTTTTATTTCTAAT</pcr_primer_p1>
		<pcr_primer_p2>GAAATCATCAGTGGAAGAACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTCGGATGGTTTTTATTTCTAATAGAACACTACCAAAAATTCGAAAAATTTACATTTTAAAAATGTATTTGGTCAGAAAACCATTTTGTTGTCTTGTCTCTGTATTATCAGAATGTCAAAATGTCCGGTTTTGAACTGTCCGAATTTTGAAACGCCTTGCTCTTAAATTATGTCGGAGCTAAACTTACGGGGTGCCGTAGCATTCTGCTTCCTCTTGATCCTTGTGCTGTTCTTCCACTGATGATTTC</canonical_amplicon>
		<polymorphic_amplicon>TTCGGATGGTTTTTATTTCTAATAGAACACTACCAAAAATTCGAAAAATTTACATTTTAAAAATGTATTTGGTCAGAAAACCATTTTGTTGTCTTGTCTCTGTATTATCAGAATGTYAAAATGTCCGGTTTTGAACTGTCCGAATTTTGAAACGCCTTGCTCTTAAATTATGTCGGAGCTAAACTTACGGGGTGCCGTAGCATTCTGCTTCCTCTTGATCCTTGTGCTGTTCTTCCACTGATGATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5482</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>257786</contig_pos>
        <strand>+</strand>
        <context>TTTTCCCTGT[C/T]TTGGCAGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTTCACACGGTCTCACAGTAATCCTGATCTACAACATCTTTTTCCCTGT</left_flank>
        <right_flank>TTGGCAGAAAAGTTTTGCAGAAAATAATTCTAATGATGACCAATTTTCGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAAATGAGAACTCAGTTTACCGGCTCTAATTTCCGGCTCAGGATCCAACTTTTTTAGAAAAATAGTTTCGAAACCGTCTTGTTCTTCACAATACTTCGAGATTCTTCAAAAAATCCATGTTTTGGCCTTTATTTTACGAGTTGTTATTCGTACGAGTTCTTATTTGTAGCAGTTCTCATTTTCCGAGTTCTCAACCTTTGTACCACCCTTTGAAAGACCTCCAAACACCTTGCATCCCCCAGCTATTCTTTGTCAATTAACTGACCCTTTCGCACATTGGTAGAGTAACTTACCCACTTCTTATCTACAATAATCAGATTCTCCAACCAACTGAACGTGCGAAAAAATAATAGGAGAAAACCGTCCCACTAAACAGTTATCGATTTTCAAAGTTGAGCCTTCAAAATCGGAAGAAACTTATGCACCAACCTAGTATTAGGATTTTGTACTTCACACGGTCTCACAGTAATCCTGATCTACAACATCTTTTTCCCTGTCTTGGCAGAAAAGTTTTGCAGAAAATAATTCTAATGATGACCAATTTTCGAAATCATGAGAGCCTTATCGCTATGTATTCCCATTAAAGTGCAGGCCATTACGACAATTGGCCTCTATTACTTTTTGAAAATGAAAGAAAAACGGTAGTTTCTTTTGGTTACAATTTCAAATTGGAACTAATTATTAAAAATGAATACAGAAAAGAATAGCGGTCTTCTCCAAAACAGGAATTGCAAAAGCTTGAAAGAAACGATCTGGCTTGATGCCAGATCGTTAACAGGTGCACAGCAAAAAGATAGAGCAAAGAAGAGAGAGGGATGAGAGCTTTGTCTCTTGTCGCATCATTATGTTGATCTTCCTTGTTTTCTTTTTGTCTCTCTTGTAAAATGACAAAGTTTATCCAAGACGTGAGATTTAGTACAAATAGACACATTGTCGTCGCCGCCAACGATTGATTGATGTACTGATAGAAGAAACATGACAGGGGGAATAGGGAGAGG</canonical>
            <polymorphic>AGAAAATGAGAACTCAGTTTACCGGCTCTAATTTCCGGCTCAGGATCCAACTTTTTTAGAAAAATAGTTTCGAAACCGTCTTGTTCTTCACAATACTTCGAGATTCTTCAAAAAATCCATGTTTTGGCCTTTATTTTACGAGTTGTTATTCGTACGAGTTCTTATTTGTAGCAGTTCTCATTTTCCGAGTTCTCAACCTTTGTACCACCCTTTGAAAGACCTCCAAACACCTTGCATCCCCCAGCTATTCTTTGTCAATTAACTGACCCTTTCGCACATTGGTAGAGTAACTTACCCACTTCTTATCTACAATAATCAGATTCTCCAACCAACTGAACGTGCGAAAAAATAATAGGAGAAAACCGTCCCACTAAACAGTTATCGATTTTCAAAGTTGAGCCTTCAAAATCGGAAGAAACTTATGCACCAACCTAGTATTAGGATTTTGTACTTCACACGGTCTCACAGTAATCCTGATCTACAACATCTTTTTCCCTGTYTTGGCAGAAAAGTTTTGCAGAAAATAATTCTAATGATGACCAATTTTCGAAATCATGAGAGCCTTATCGCTATGTATTCCCATTAAAGTGCAGGCCATTACGACAATTGGCCTCTATTACTTTTTGAAAATGAAAGAAAAACGGTAGTTTCTTTTGGTTACAATTTCAAATTGGAACTAATTATTAAAAATGAATACAGAAAAGAATAGCGGTCTTCTCCAAAACAGGAATTGCAAAAGCTTGAAAGAAACGATCTGGCTTGATGCCAGATCGTTAACAGGTGCACAGCAAAAAGATAGAGCAAAGAAGAGAGAGGGATGAGAGCTTTGTCTCTTGTCGCATCATTATGTTGATCTTCCTTGTTTTCTTTTTGTCTCTCTTGTAAAATGACAAAGTTTATCCAAGACGTGAGATTTAGTACAAATAGACACATTGTCGTCGCCGCCAACGATTGATTGATGTACTGATAGAAGAAACATGACAGGGGGAATAGGGAGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTGTACTTCACACGGTCT</pcr_primer_p1>
		<pcr_primer_p2>TTGAAATTGTAACCAAAAGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>GATTTTGTACTTCACACGGTCTCACAGTAATCCTGATCTACAACATCTTTTTCCCTGTCTTGGCAGAAAAGTTTTGCAGAAAATAATTCTAATGATGACCAATTTTCGAAATCATGAGAGCCTTATCGCTATGTATTCCCATTAAAGTGCAGGCCATTACGACAATTGGCCTCTATTACTTTTTGAAAATGAAAGAAAAACGGTAGTTTCTTTTGGTTACAATTTCAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTGTACTTCACACGGTCTCACAGTAATCCTGATCTACAACATCTTTTTCCCTGTYTTGGCAGAAAAGTTTTGCAGAAAATAATTCTAATGATGACCAATTTTCGAAATCATGAGAGCCTTATCGCTATGTATTCCCATTAAAGTGCAGGCCATTACGACAATTGGCCTCTATTACTTTTTGAAAATGAAAGAAAAACGGTAGTTTCTTTTGGTTACAATTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5483</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>257976</contig_pos>
        <strand>+</strand>
        <context>ATTATTAAAA[A/T]TGAATACAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACGGTAGTTTCTTTTGGTTACAATTTCAAATTGGAACTAATTATTAAAA</left_flank>
        <right_flank>TGAATACAGAAAAGAATAGCGGTCTTCTCCAAAACAGGAATTGCAAAAGC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCAACCTTTGTACCACCCTTTGAAAGACCTCCAAACACCTTGCATCCCCCAGCTATTCTTTGTCAATTAACTGACCCTTTCGCACATTGGTAGAGTAACTTACCCACTTCTTATCTACAATAATCAGATTCTCCAACCAACTGAACGTGCGAAAAAATAATAGGAGAAAACCGTCCCACTAAACAGTTATCGATTTTCAAAGTTGAGCCTTCAAAATCGGAAGAAACTTATGCACCAACCTAGTATTAGGATTTTGTACTTCACACGGTCTCACAGTAATCCTGATCTACAACATCTTTTTCCCTGTCTTGGCAGAAAAGTTTTGCAGAAAATAATTCTAATGATGACCAATTTTCGAAATCATGAGAGCCTTATCGCTATGTATTCCCATTAAAGTGCAGGCCATTACGACAATTGGCCTCTATTACTTTTTGAAAATGAAAGAAAAACGGTAGTTTCTTTTGGTTACAATTTCAAATTGGAACTAATTATTAAAAATGAATACAGAAAAGAATAGCGGTCTTCTCCAAAACAGGAATTGCAAAAGCTTGAAAGAAACGATCTGGCTTGATGCCAGATCGTTAACAGGTGCACAGCAAAAAGATAGAGCAAAGAAGAGAGAGGGATGAGAGCTTTGTCTCTTGTCGCATCATTATGTTGATCTTCCTTGTTTTCTTTTTGTCTCTCTTGTAAAATGACAAAGTTTATCCAAGACGTGAGATTTAGTACAAATAGACACATTGTCGTCGCCGCCAACGATTGATTGATGTACTGATAGAAGAAACATGACAGGGGGAATAGGGAGAGGAGATGGAGCAAAAAATGAAAAAAAGAGTTTTGGGAAGTCGAAGTTATTTTTGTAGATCTCAATGGTGCATAAATTTGGTTTGAATTTCATAAAACTGTAAAGAATTGAATAATTATGGAGCTCTAATACCCGAAAACTTATGATATCTTTTGGAAATGCTCAAGCGATTTGAATTTGAAACTATCATCAT</canonical>
            <polymorphic>TCTCAACCTTTGTACCACCCTTTGAAAGACCTCCAAACACCTTGCATCCCCCAGCTATTCTTTGTCAATTAACTGACCCTTTCGCACATTGGTAGAGTAACTTACCCACTTCTTATCTACAATAATCAGATTCTCCAACCAACTGAACGTGCGAAAAAATAATAGGAGAAAACCGTCCCACTAAACAGTTATCGATTTTCAAAGTTGAGCCTTCAAAATCGGAAGAAACTTATGCACCAACCTAGTATTAGGATTTTGTACTTCACACGGTCTCACAGTAATCCTGATCTACAACATCTTTTTCCCTGTCTTGGCAGAAAAGTTTTGCAGAAAATAATTCTAATGATGACCAATTTTCGAAATCATGAGAGCCTTATCGCTATGTATTCCCATTAAAGTGCAGGCCATTACGACAATTGGCCTCTATTACTTTTTGAAAATGAAAGAAAAACGGTAGTTTCTTTTGGTTACAATTTCAAATTGGAACTAATTATTAAAAWTGAATACAGAAAAGAATAGCGGTCTTCTCCAAAACAGGAATTGCAAAAGCTTGAAAGAAACGATCTGGCTTGATGCCAGATCGTTAACAGGTGCACAGCAAAAAGATAGAGCAAAGAAGAGAGAGGGATGAGAGCTTTGTCTCTTGTCGCATCATTATGTTGATCTTCCTTGTTTTCTTTTTGTCTCTCTTGTAAAATGACAAAGTTTATCCAAGACGTGAGATTTAGTACAAATAGACACATTGTCGTCGCCGCCAACGATTGATTGATGTACTGATAGAAGAAACATGACAGGGGGAATAGGGAGAGGAGATGGAGCAAAAAATGAAAAAAAGAGTTTTGGGAAGTCGAAGTTATTTTTGTAGATCTCAATGGTGCATAAATTTGGTTTGAATTTCATAAAACTGTAAAGAATTGAATAATTATGGAGCTCTAATACCCGAAAACTTATGATATCTTTTGGAAATGCTCAAGCGATTTGAATTTGAAACTATCATCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTATCGCTATGTATTCCCATTA</pcr_primer_p1>
		<pcr_primer_p2>CTCTTCTTTGCTCTATCTTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTATCGCTATGTATTCCCATTAAAGTGCAGGCCATTACGACAATTGGCCTCTATTACTTTTTGAAAATGAAAGAAAAACGGTAGTTTCTTTTGGTTACAATTTCAAATTGGAACTAATTATTAAAAATGAATACAGAAAAGAATAGCGGTCTTCTCCAAAACAGGAATTGCAAAAGCTTGAAAGAAACGATCTGGCTTGATGCCAGATCGTTAACAGGTGCACAGCAAAAAGATAGAGCAAAGAAGAG</canonical_amplicon>
		<polymorphic_amplicon>CTTATCGCTATGTATTCCCATTAAAGTGCAGGCCATTACGACAATTGGCCTCTATTACTTTTTGAAAATGAAAGAAAAACGGTAGTTTCTTTTGGTTACAATTTCAAATTGGAACTAATTATTAAAAWTGAATACAGAAAAGAATAGCGGTCTTCTCCAAAACAGGAATTGCAAAAGCTTGAAAGAAACGATCTGGCTTGATGCCAGATCGTTAACAGGTGCACAGCAAAAAGATAGAGCAAAGAAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5484</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>259743</contig_pos>
        <strand>+</strand>
        <context>GGATAGAATG[A/G]ATGGAACAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTGTTTTTGAATGGATCAAGGGTTGAAGATCGGAAGATAGGATAGAATG</left_flank>
        <right_flank>ATGGAACAAATAGAATGGATGCATGAAACCCAGGAAGTTTTGGCTTGAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTGAAGAGATATCAGCGAAATAGTGTGTCTGACGAAGAGACGCGGGCAGAATTGAACGGTAAATAAGTGTGAAGTACTGTATGGCGGTGGCGGGAAGTTGTGCAAAAGACACAACTTGTTAGTACTCTTTTTATCAATAATACGTTTGCTACAGAACACTGGGAAGTCTTTTTTTTTGGGTTGTGATTGGCAAACGAATGTCTTTGAGATTTGATTTGATTTCACACGGAAAAGGTTTCAACACAGACATAAAATTGGATTTCTGGAGAAGAAGAAGAAGAATAAGGATGAGGGAGCAAACTGATTTTTGGAAGAAAGAGAGTGCAAGTTTTTCGAGTAAAAGAGGAGGAAGAGAAGAAAGTAGGAAGGCTGGAATTTCAAATCAAAAGACGATTTTGAAATGGTCTTAGAATTGGTAAGGAGTTCTGGAATACGAGATTATGATGACTTGTTTTTGAATGGATCAAGGGTTGAAGATCGGAAGATAGGATAGAATGGATGGAACAAATAGAATGGATGCATGAAACCCAGGAAGTTTTGGCTTGAAATTTTGTATAGTTCTGGAATCATGAAAAGCCAATGAATTACAGTATTAATAGGGCAAATAAATAAAACACAAACGACTGGAAAATCGATCAAGTACTAAAAATCGGAAATTTTTTCAAATGTTTTTGCGAAAAAAAGTTTCAATGACACTTCATTCTTGGCGAGCTTATCATCTGACAGAACTGTTATATATTTTTAATTGACTCGGGTTTTCTATTTGTAAAAAAAACAGGAAAAACGCTGAAAATCCGAGCTGAAAAACCGGGCATTGAAAATTCTGAAAAAAAAGTCTGGCTCGTACGATTATATGAAGTAAAGTTATTAAAACGGAAGTTTTACTTTGAAAACTCAGAAATTTTGCGAAAGTTGAACGTTTGAAACTTCGAGAAGTTTTTTTCCTGGTTCTAGTCCTCAAGAGTTTCTGATAATTTGAAACTATGCGAAGTTTTCTA</canonical>
            <polymorphic>ATCTGAAGAGATATCAGCGAAATAGTGTGTCTGACGAAGAGACGCGGGCAGAATTGAACGGTAAATAAGTGTGAAGTACTGTATGGCGGTGGCGGGAAGTTGTGCAAAAGACACAACTTGTTAGTACTCTTTTTATCAATAATACGTTTGCTACAGAACACTGGGAAGTCTTTTTTTTTGGGTTGTGATTGGCAAACGAATGTCTTTGAGATTTGATTTGATTTCACACGGAAAAGGTTTCAACACAGACATAAAATTGGATTTCTGGAGAAGAAGAAGAAGAATAAGGATGAGGGAGCAAACTGATTTTTGGAAGAAAGAGAGTGCAAGTTTTTCGAGTAAAAGAGGAGGAAGAGAAGAAAGTAGGAAGGCTGGAATTTCAAATCAAAAGACGATTTTGAAATGGTCTTAGAATTGGTAAGGAGTTCTGGAATACGAGATTATGATGACTTGTTTTTGAATGGATCAAGGGTTGAAGATCGGAAGATAGGATAGAATGRATGGAACAAATAGAATGGATGCATGAAACCCAGGAAGTTTTGGCTTGAAATTTTGTATAGTTCTGGAATCATGAAAAGCCAATGAATTACAGTATTAATAGGGCAAATAAATAAAACACAAACGACTGGAAAATCGATCAAGTACTAAAAATCGGAAATTTTTTCAAATGTTTTTGCGAAAAAAAGTTTCAATGACACTTCATTCTTGGCGAGCTTATCATCTGACAGAACTGTTATATATTTTTAATTGACTCGGGTTTTCTATTTGTAAAAAAAACAGGAAAAACGCTGAAAATCCGAGCTGAAAAACCGGGCATTGAAAATTCTGAAAAAAAAGTCTGGCTCGTACGATTATATGAAGTAAAGTTATTAAAACGGAAGTTTTACTTTGAAAACTCAGAAATTTTGCGAAAGTTGAACGTTTGAAACTTCGAGAAGTTTTTTTCCTGGTTCTAGTCCTCAAGAGTTTCTGATAATTTGAAACTATGCGAAGTTTTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAAATGGTCTTAGAATTGGTA</pcr_primer_p1>
		<pcr_primer_p2>TAGTACTTGATCGATTTTCCAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGAAATGGTCTTAGAATTGGTAAGGAGTTCTGGAATACGAGATTATGATGACTTGTTTTTGAATGGATCAAGGGTTGAAGATCGGAAGATAGGATAGAATGGATGGAACAAATAGAATGGATGCATGAAACCCAGGAAGTTTTGGCTTGAAATTTTGTATAGTTCTGGAATCATGAAAAGCCAATGAATTACAGTATTAATAGGGCAAATAAATAAAACACAAACGACTGGAAAATCGATCAAGTACTA</canonical_amplicon>
		<polymorphic_amplicon>TTGAAATGGTCTTAGAATTGGTAAGGAGTTCTGGAATACGAGATTATGATGACTTGTTTTTGAATGGATCAAGGGTTGAAGATCGGAAGATAGGATAGAATGRATGGAACAAATAGAATGGATGCATGAAACCCAGGAAGTTTTGGCTTGAAATTTTGTATAGTTCTGGAATCATGAAAAGCCAATGAATTACAGTATTAATAGGGCAAATAAATAAAACACAAACGACTGGAAAATCGATCAAGTACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5485</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>289307</contig_pos>
        <strand>+</strand>
        <context>CCACCAAAAA[A/C]CTACATAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAACAGATTGGTTTCGTATTTCTTTTTGGAGAACACAAACCACCAAAAA</left_flank>
        <right_flank>CTACATAAAGAACTTTAAAAGGGGGATTCTGAAGTCCGTGCAGAAGTTAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCAATTGATAAACTATCATTCTTATAATAAATAAATGAAGTTGCGTCTCTTTATTTCTCACTTTGTCCGAACATCATTTATCATAATATCTCCAATATTTTATCAGGTGGCGGATTGTTGATATCTTTCACAAGAATCGACAAAATTTCAGACGCCTATAACCATGTTACAAACGCCTTTCGTAACATTTTCCAGATTTCTTTTTTCTCTCTTTTTAAGATCTTCCGCCTATTTTTTTGCACTTTTCCATTTTTCCTTTTTTCCTCCTATTATCTAAAAAATGACGCACCTAAAATGATTTCGTGAAGAAAAGGCTAAAAAGTTCCTCCTTATTTTTTACGAAAAGCACTTTGGATTTAAACCCGTTCGAGCATTAAAGTGAAAGTGGAGAAGTGCAAAACCACTTTGCATTTTTTCGTATTTTCTTAAAGTTGAAAATGGAGAAAAAGAAACAGATTGGTTTCGTATTTCTTTTTGGAGAACACAAACCACCAAAAACCTACATAAAGAACTTTAAAAGGGGGATTCTGAAGTCCGTGCAGAAGTTAAAAAACCAAGAAGGGACAACCGGAAACTTGAAAAGTGAAACAAATAGTTTAGAAATATGAAACCAAGTTTTCGAAACTTCCGAAAGAACTACTTTTTTTGGTTTTAAAATGAATCATGATAGACTGACGAAAGGGGCTTCTGTGTCAGTTTTTTTTTTTACTTTTGTGATCAGACGAATAACAATCGAAGCCGTGAAACTAGAACTTTTGTTTGTTGAGATCAAAAATATATATATTGTTTTGGGTTGGCTGAAAAACGCCGAAAAATTCAAAAGATGTGCGGTAAATTGAAATTTTCTATTTAGGATTATTCTTCTTATCCAGATGAACTTCCTCCTAGCTTCCCCACTTCAGACTACTAAAATGTATTCATGATTACTTGGGTATCCATACAAAATTTCCTGATTCCAAAGAAAGCGAAAGCTAATGAAAACTTGTTATGAGCAATTCC</canonical>
            <polymorphic>GTCAATTGATAAACTATCATTCTTATAATAAATAAATGAAGTTGCGTCTCTTTATTTCTCACTTTGTCCGAACATCATTTATCATAATATCTCCAATATTTTATCAGGTGGCGGATTGTTGATATCTTTCACAAGAATCGACAAAATTTCAGACGCCTATAACCATGTTACAAACGCCTTTCGTAACATTTTCCAGATTTCTTTTTTCTCTCTTTTTAAGATCTTCCGCCTATTTTTTTGCACTTTTCCATTTTTCCTTTTTTCCTCCTATTATCTAAAAAATGACGCACCTAAAATGATTTCGTGAAGAAAAGGCTAAAAAGTTCCTCCTTATTTTTTACGAAAAGCACTTTGGATTTAAACCCGTTCGAGCATTAAAGTGAAAGTGGAGAAGTGCAAAACCACTTTGCATTTTTTCGTATTTTCTTAAAGTTGAAAATGGAGAAAAAGAAACAGATTGGTTTCGTATTTCTTTTTGGAGAACACAAACCACCAAAAAMCTACATAAAGAACTTTAAAAGGGGGATTCTGAAGTCCGTGCAGAAGTTAAAAAACCAAGAAGGGACAACCGGAAACTTGAAAAGTGAAACAAATAGTTTAGAAATATGAAACCAAGTTTTCGAAACTTCCGAAAGAACTACTTTTTTTGGTTTTAAAATGAATCATGATAGACTGACGAAAGGGGCTTCTGTGTCAGTTTTTTTTTTTACTTTTGTGATCAGACGAATAACAATCGAAGCCGTGAAACTAGAACTTTTGTTTGTTGAGATCAAAAATATATATATTGTTTTGGGTTGGCTGAAAAACGCCGAAAAATTCAAAAGATGTGCGGTAAATTGAAATTTTCTATTTAGGATTATTCTTCTTATCCAGATGAACTTCCTCCTAGCTTCCCCACTTCAGACTACTAAAATGTATTCATGATTACTTGGGTATCCATACAAAATTTCCTGATTCCAAAGAAAGCGAAAGCTAATGAAAACTTGTTATGAGCAATTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTAAAGTGAAAGTGGAGAAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCGAAAACTTGGTTTCATATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTAAAGTGAAAGTGGAGAAGTGCAAAACCACTTTGCATTTTTTCGTATTTTCTTAAAGTTGAAAATGGAGAAAAAGAAACAGATTGGTTTCGTATTTCTTTTTGGAGAACACAAACCACCAAAAACCTACATAAAGAACTTTAAAAGGGGGATTCTGAAGTCCGTGCAGAAGTTAAAAAACCAAGAAGGGACAACCGGAAACTTGAAAAGTGAAACAAATAGTTTAGAAATATGAAACCAAGTTTTCGA</canonical_amplicon>
		<polymorphic_amplicon>ATTAAAGTGAAAGTGGAGAAGTGCAAAACCACTTTGCATTTTTTCGTATTTTCTTAAAGTTGAAAATGGAGAAAAAGAAACAGATTGGTTTCGTATTTCTTTTTGGAGAACACAAACCACCAAAAAMCTACATAAAGAACTTTAAAAGGGGGATTCTGAAGTCCGTGCAGAAGTTAAAAAACCAAGAAGGGACAACCGGAAACTTGAAAAGTGAAACAAATAGTTTAGAAATATGAAACCAAGTTTTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5486</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>315131</contig_pos>
        <strand>+</strand>
        <context>TCAAGTGATT[C/T]GAAACTGTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACGTTCTGGAGGGATCGATCGATCAGTAGGAGTAGAACATCAAGTGATT</left_flank>
        <right_flank>GAAACTGTGATTTGTAAAACACAAATATTCGGCTTCGAAATGCATGGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCATTCTAAAGGAATATTTCAAAGTCTAGGAGCTTCAAATAACTTTCCAGAAAGTTTAGAACCCGCAACCGTACCTTCTCAGTTTCGTACCAACGGAGGAATTGTGGAGTCGACATGGCGATGAAGTGGGGGGACTGAGCTGATTTCTAATCAGAGAGGAAAATTTAGATGATCGTTCAGGACGAGTGTCAAACGGGAGACTGACTGTCCCTGTAAACAGTTCCAACACAAGCTGAGCGAGAGTGAGAGAGAACTAGACACAACTACAGTCATAATATTCGCAAGACCCGCCCACTTTTGCGGGAAAGAGCGAAGCATCCATGGAGGTCTGCGACATGAGAATGTTTCTTTTTGTGCACCACCCTGGGTCTCCGACCATCTCTCCACTATCTAAACAACGTCTTCCAGTGATTCATCGGTGTTGCGCGGAACGGACCGAACGAAAAGAACGTTCTGGAGGGATCGATCGATCAGTAGGAGTAGAACATCAAGTGATTTGAAACTGTGATTTGTAAAACACAAATATTCGGCTTCGAAATGCATGGAAACCTTCCGTTTCCATTGCTCAATATTTGGCGTCTTCGCATTACTGTTTACCGCCTCTGGCGTCACGTGCACTTCAAAGGCACGAATTTCGTTTGGGAAATGACCCGAAATACACTTCAAACAAACGCCAGGTGTTGCGATATTAGTTTCTGCTGTCCTTCACAGTACTGCCACGTGTCTTTCAGGGTGAGGGATCATTCGTTCAGCTAGCTGTATAGCTTCCCACGGTTGCCACATTGATTGCTTTCCAAGTCAAATTTCCATGTTGTTGTTGTTGTTCTTTTGGTACTCGATGGACGCTCAAAAGTGACAAAGAAACGAGGGGGAGAAGATTGTATTAAAATTTGAAGATGAATTCAACCGAAGAAGAGAAGACGTGTCGGAGGAGAATTGAGGCAGAAAAGGGTTTAGTGAGGGAAAAAACTGCAACTGGAAATGCCTGGAATTCCTGA</canonical>
            <polymorphic>GATCATTCTAAAGGAATATTTCAAAGTCTAGGAGCTTCAAATAACTTTCCAGAAAGTTTAGAACCCGCAACCGTACCTTCTCAGTTTCGTACCAACGGAGGAATTGTGGAGTCGACATGGCGATGAAGTGGGGGGACTGAGCTGATTTCTAATCAGAGAGGAAAATTTAGATGATCGTTCAGGACGAGTGTCAAACGGGAGACTGACTGTCCCTGTAAACAGTTCCAACACAAGCTGAGCGAGAGTGAGAGAGAACTAGACACAACTACAGTCATAATATTCGCAAGACCCGCCCACTTTTGCGGGAAAGAGCGAAGCATCCATGGAGGTCTGCGACATGAGAATGTTTCTTTTTGTGCACCACCCTGGGTCTCCGACCATCTCTCCACTATCTAAACAACGTCTTCCAGTGATTCATCGGTGTTGCGCGGAACGGACCGAACGAAAAGAACGTTCTGGAGGGATCGATCGATCAGTAGGAGTAGAACATCAAGTGATTYGAAACTGTGATTTGTAAAACACAAATATTCGGCTTCGAAATGCATGGAAACCTTCCGTTTCCATTGCTCAATATTTGGCGTCTTCGCATTACTGTTTACCGCCTCTGGCGTCACGTGCACTTCAAAGGCACGAATTTCGTTTGGGAAATGACCCGAAATACACTTCAAACAAACGCCAGGTGTTGCGATATTAGTTTCTGCTGTCCTTCACAGTACTGCCACGTGTCTTTCAGGGTGAGGGATCATTCGTTCAGCTAGCTGTATAGCTTCCCACGGTTGCCACATTGATTGCTTTCCAAGTCAAATTTCCATGTTGTTGTTGTTGTTCTTTTGGTACTCGATGGACGCTCAAAAGTGACAAAGAAACGAGGGGGAGAAGATTGTATTAAAATTTGAAGATGAATTCAACCGAAGAAGAGAAGACGTGTCGGAGGAGAATTGAGGCAGAAAAGGGTTTAGTGAGGGAAAAAACTGCAACTGGAAATGCCTGGAATTCCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATGAGAATGTTTCTTTTTGTG</pcr_primer_p1>
		<pcr_primer_p2>CAAATATTGAGCAATGGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ACATGAGAATGTTTCTTTTTGTGCACCACCCTGGGTCTCCGACCATCTCTCCACTATCTAAACAACGTCTTCCAGTGATTCATCGGTGTTGCGCGGAACGGACCGAACGAAAAGAACGTTCTGGAGGGATCGATCGATCAGTAGGAGTAGAACATCAAGTGATTTGAAACTGTGATTTGTAAAACACAAATATTCGGCTTCGAAATGCATGGAAACCTTCCGTTTCCATTGCTCAATATTTG</canonical_amplicon>
		<polymorphic_amplicon>ACATGAGAATGTTTCTTTTTGTGCACCACCCTGGGTCTCCGACCATCTCTCCACTATCTAAACAACGTCTTCCAGTGATTCATCGGTGTTGCGCGGAACGGACCGAACGAAAAGAACGTTCTGGAGGGATCGATCGATCAGTAGGAGTAGAACATCAAGTGATTYGAAACTGTGATTTGTAAAACACAAATATTCGGCTTCGAAATGCATGGAAACCTTCCGTTTCCATTGCTCAATATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5487</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>315079</contig_pos>
        <strand>+</strand>
        <context>CCGAACGAAA[A/G]GAACGTTCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAACGTCTTCCAGTGATTCATCGGTGTTGCGCGGAACGGACCGAACGAAA</left_flank>
        <right_flank>GAACGTTCTGGAGGGATCGATCGATCAGTAGGAGTAGAACATCAAGTGAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGTTGGAATAATGATGTCTGATGGAAGTGAAATCGTTTCTGATCTGTGAGGATCATTCTAAAGGAATATTTCAAAGTCTAGGAGCTTCAAATAACTTTCCAGAAAGTTTAGAACCCGCAACCGTACCTTCTCAGTTTCGTACCAACGGAGGAATTGTGGAGTCGACATGGCGATGAAGTGGGGGGACTGAGCTGATTTCTAATCAGAGAGGAAAATTTAGATGATCGTTCAGGACGAGTGTCAAACGGGAGACTGACTGTCCCTGTAAACAGTTCCAACACAAGCTGAGCGAGAGTGAGAGAGAACTAGACACAACTACAGTCATAATATTCGCAAGACCCGCCCACTTTTGCGGGAAAGAGCGAAGCATCCATGGAGGTCTGCGACATGAGAATGTTTCTTTTTGTGCACCACCCTGGGTCTCCGACCATCTCTCCACTATCTAAACAACGTCTTCCAGTGATTCATCGGTGTTGCGCGGAACGGACCGAACGAAAAGAACGTTCTGGAGGGATCGATCGATCAGTAGGAGTAGAACATCAAGTGATTTGAAACTGTGATTTGTAAAACACAAATATTCGGCTTCGAAATGCATGGAAACCTTCCGTTTCCATTGCTCAATATTTGGCGTCTTCGCATTACTGTTTACCGCCTCTGGCGTCACGTGCACTTCAAAGGCACGAATTTCGTTTGGGAAATGACCCGAAATACACTTCAAACAAACGCCAGGTGTTGCGATATTAGTTTCTGCTGTCCTTCACAGTACTGCCACGTGTCTTTCAGGGTGAGGGATCATTCGTTCAGCTAGCTGTATAGCTTCCCACGGTTGCCACATTGATTGCTTTCCAAGTCAAATTTCCATGTTGTTGTTGTTGTTCTTTTGGTACTCGATGGACGCTCAAAAGTGACAAAGAAACGAGGGGGAGAAGATTGTATTAAAATTTGAAGATGAATTCAACCGAAGAAGAGAAGACGTGTCGGAGGAGAATTGAGGCAGA</canonical>
            <polymorphic>TTAGTTGGAATAATGATGTCTGATGGAAGTGAAATCGTTTCTGATCTGTGAGGATCATTCTAAAGGAATATTTCAAAGTCTAGGAGCTTCAAATAACTTTCCAGAAAGTTTAGAACCCGCAACCGTACCTTCTCAGTTTCGTACCAACGGAGGAATTGTGGAGTCGACATGGCGATGAAGTGGGGGGACTGAGCTGATTTCTAATCAGAGAGGAAAATTTAGATGATCGTTCAGGACGAGTGTCAAACGGGAGACTGACTGTCCCTGTAAACAGTTCCAACACAAGCTGAGCGAGAGTGAGAGAGAACTAGACACAACTACAGTCATAATATTCGCAAGACCCGCCCACTTTTGCGGGAAAGAGCGAAGCATCCATGGAGGTCTGCGACATGAGAATGTTTCTTTTTGTGCACCACCCTGGGTCTCCGACCATCTCTCCACTATCTAAACAACGTCTTCCAGTGATTCATCGGTGTTGCGCGGAACGGACCGAACGAAARGAACGTTCTGGAGGGATCGATCGATCAGTAGGAGTAGAACATCAAGTGATTTGAAACTGTGATTTGTAAAACACAAATATTCGGCTTCGAAATGCATGGAAACCTTCCGTTTCCATTGCTCAATATTTGGCGTCTTCGCATTACTGTTTACCGCCTCTGGCGTCACGTGCACTTCAAAGGCACGAATTTCGTTTGGGAAATGACCCGAAATACACTTCAAACAAACGCCAGGTGTTGCGATATTAGTTTCTGCTGTCCTTCACAGTACTGCCACGTGTCTTTCAGGGTGAGGGATCATTCGTTCAGCTAGCTGTATAGCTTCCCACGGTTGCCACATTGATTGCTTTCCAAGTCAAATTTCCATGTTGTTGTTGTTGTTCTTTTGGTACTCGATGGACGCTCAAAAGTGACAAAGAAACGAGGGGGAGAAGATTGTATTAAAATTTGAAGATGAATTCAACCGAAGAAGAGAAGACGTGTCGGAGGAGAATTGAGGCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATGAGAATGTTTCTTTTTGTG</pcr_primer_p1>
		<pcr_primer_p2>CAAATATTGAGCAATGGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ACATGAGAATGTTTCTTTTTGTGCACCACCCTGGGTCTCCGACCATCTCTCCACTATCTAAACAACGTCTTCCAGTGATTCATCGGTGTTGCGCGGAACGGACCGAACGAAAAGAACGTTCTGGAGGGATCGATCGATCAGTAGGAGTAGAACATCAAGTGATTTGAAACTGTGATTTGTAAAACACAAATATTCGGCTTCGAAATGCATGGAAACCTTCCGTTTCCATTGCTCAATATTTG</canonical_amplicon>
		<polymorphic_amplicon>ACATGAGAATGTTTCTTTTTGTGCACCACCCTGGGTCTCCGACCATCTCTCCACTATCTAAACAACGTCTTCCAGTGATTCATCGGTGTTGCGCGGAACGGACCGAACGAAARGAACGTTCTGGAGGGATCGATCGATCAGTAGGAGTAGAACATCAAGTGATTTGAAACTGTGATTTGTAAAACACAAATATTCGGCTTCGAAATGCATGGAAACCTTCCGTTTCCATTGCTCAATATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5567</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>81365</contig_pos>
        <strand>+</strand>
        <context>AGATCTGGAA[C/T]ATTCCAAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAATTGGAGCAGTCTGAAATTTCAAAGATTATCATTTTTAGATCTGGAA</left_flank>
        <right_flank>ATTCCAAACTTACCGTACTCTTACATGGACCCGGAATTTCCAAAATTTCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTGGGTTACTGTAGCCAGTAGCTCATTGAGACGTTTGCTATCCAATTTTTTTGAAAATTCCAAAATCGGTCTGTTGGAATTTTGAGGACTCGTGATTGGAACAGGTTTTTGGACTCGAGGCGTCTGAAATCAATTTTTTCGAATTTCAAAAACTAATATTCGAAAAAACATACCGTATCCTTATTGAAATTTTGAGATGATGCTGAGTTTTCCTGTTCAACCAGAAAATCGAAAAGACTCATTTCTTTGGGAACCAGAACTTTTGGAGCTTTCGGAGCTGAAACTTGGGGTGACGTCTTCTGGAAAAGTGAAAATTTTAATTCTCAAAAAAGCCTGAAAAATTAGACTTACCGTATTCATACACTGGACCGACGATTGTGAATTTTGTGGTGTCAAAAATCTAGATATATTGAAATTTGCTAATTTTGAAGTTTCCAGAGCAGGTTTCTGAATTGGAGCAGTCTGAAATTTCAAAGATTATCATTTTTAGATCTGGAATATTCCAAACTTACCGTACTCTTACATGGACCCGGAATTTCCAAAATTTCAGATAAACTGGAAGTGGAGGATTGTACAGAATTTTCCTCTGAATTTTCAGATTCCATTTTCCTCAAATTCTCCTCTTGAACCAAAAAATCGAAAAAGCTCAATTCTTTGGAATCCCGATTTTCTGAACTCTGGAAGATCAGTATTTCAGATTTCGAATCAATGAAAATGGGGACCTACCGTTTTCTTAACTTGCTCAAAACTCTGTGATAGTAATTGCAAAATTTCATCTAAATTGGGACATACCATATTCGAAGTTTTCAGAACAGGTCTCTGAAAACAATTTTTAAATTTACAAATTCAAAAAAAATCACCCACCTCAATTTGGTTCAAATTCACAGAATCTTTCTGGGAATTTTCAGACTTCTCCCTATCAAATTCTAAATTTAATTTTTTCGAATCTTCCCTTTTTCTTTTTTTCGGATTCAAAATTTTTGATACTCCCAGAACTTG</canonical>
            <polymorphic>ACTGGGTTACTGTAGCCAGTAGCTCATTGAGACGTTTGCTATCCAATTTTTTTGAAAATTCCAAAATCGGTCTGTTGGAATTTTGAGGACTCGTGATTGGAACAGGTTTTTGGACTCGAGGCGTCTGAAATCAATTTTTTCGAATTTCAAAAACTAATATTCGAAAAAACATACCGTATCCTTATTGAAATTTTGAGATGATGCTGAGTTTTCCTGTTCAACCAGAAAATCGAAAAGACTCATTTCTTTGGGAACCAGAACTTTTGGAGCTTTCGGAGCTGAAACTTGGGGTGACGTCTTCTGGAAAAGTGAAAATTTTAATTCTCAAAAAAGCCTGAAAAATTAGACTTACCGTATTCATACACTGGACCGACGATTGTGAATTTTGTGGTGTCAAAAATCTAGATATATTGAAATTTGCTAATTTTGAAGTTTCCAGAGCAGGTTTCTGAATTGGAGCAGTCTGAAATTTCAAAGATTATCATTTTTAGATCTGGAAYATTCCAAACTTACCGTACTCTTACATGGACCCGGAATTTCCAAAATTTCAGATAAACTGGAAGTGGAGGATTGTACAGAATTTTCCTCTGAATTTTCAGATTCCATTTTCCTCAAATTCTCCTCTTGAACCAAAAAATCGAAAAAGCTCAATTCTTTGGAATCCCGATTTTCTGAACTCTGGAAGATCAGTATTTCAGATTTCGAATCAATGAAAATGGGGACCTACCGTTTTCTTAACTTGCTCAAAACTCTGTGATAGTAATTGCAAAATTTCATCTAAATTGGGACATACCATATTCGAAGTTTTCAGAACAGGTCTCTGAAAACAATTTTTAAATTTACAAATTCAAAAAAAATCACCCACCTCAATTTGGTTCAAATTCACAGAATCTTTCTGGGAATTTTCAGACTTCTCCCTATCAAATTCTAAATTTAATTTTTTCGAATCTTCCCTTTTTCTTTTTTTCGGATTCAAAATTTTTGATACTCCCAGAACTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 342 158</canonical_bands>
                <polymorphic_bands>842 158</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTACCGTATTCATACACTGGAC</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTCAGAGGAAAATTCTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTACCGTATTCATACACTGGACCGACGATTGTGAATTTTGTGGTGTCAAAAATCTAGATATATTGAAATTTGCTAATTTTGAAGTTTCCAGAGCAGGTTTCTGAATTGGAGCAGTCTGAAATTTCAAAGATTATCATTTTTAGATCTGGAATATTCCAAACTTACCGTACTCTTACATGGACCCGGAATTTCCAAAATTTCAGATAAACTGGAAGTGGAGGATTGTACAGAATTTTCCTCTGAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTTACCGTATTCATACACTGGACCGACGATTGTGAATTTTGTGGTGTCAAAAATCTAGATATATTGAAATTTGCTAATTTTGAAGTTTCCAGAGCAGGTTTCTGAATTGGAGCAGTCTGAAATTTCAAAGATTATCATTTTTAGATCTGGAAYATTCCAAACTTACCGTACTCTTACATGGACCCGGAATTTCCAAAATTTCAGATAAACTGGAAGTGGAGGATTGTACAGAATTTTCCTCTGAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5568</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>81349</contig_pos>
        <strand>+</strand>
        <context>AAAGATTATC[A/C]TTTTTAGATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCCAGAGCAGGTTTCTGAATTGGAGCAGTCTGAAATTTCAAAGATTATC</left_flank>
        <right_flank>TTTTTAGATCTGGAATATTCCAAACTTACCGTACTCTTACATGGACCCGG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGACGTTTTTGGTGACTGGGTTACTGTAGCCAGTAGCTCATTGAGACGTTTGCTATCCAATTTTTTTGAAAATTCCAAAATCGGTCTGTTGGAATTTTGAGGACTCGTGATTGGAACAGGTTTTTGGACTCGAGGCGTCTGAAATCAATTTTTTCGAATTTCAAAAACTAATATTCGAAAAAACATACCGTATCCTTATTGAAATTTTGAGATGATGCTGAGTTTTCCTGTTCAACCAGAAAATCGAAAAGACTCATTTCTTTGGGAACCAGAACTTTTGGAGCTTTCGGAGCTGAAACTTGGGGTGACGTCTTCTGGAAAAGTGAAAATTTTAATTCTCAAAAAAGCCTGAAAAATTAGACTTACCGTATTCATACACTGGACCGACGATTGTGAATTTTGTGGTGTCAAAAATCTAGATATATTGAAATTTGCTAATTTTGAAGTTTCCAGAGCAGGTTTCTGAATTGGAGCAGTCTGAAATTTCAAAGATTATCATTTTTAGATCTGGAATATTCCAAACTTACCGTACTCTTACATGGACCCGGAATTTCCAAAATTTCAGATAAACTGGAAGTGGAGGATTGTACAGAATTTTCCTCTGAATTTTCAGATTCCATTTTCCTCAAATTCTCCTCTTGAACCAAAAAATCGAAAAAGCTCAATTCTTTGGAATCCCGATTTTCTGAACTCTGGAAGATCAGTATTTCAGATTTCGAATCAATGAAAATGGGGACCTACCGTTTTCTTAACTTGCTCAAAACTCTGTGATAGTAATTGCAAAATTTCATCTAAATTGGGACATACCATATTCGAAGTTTTCAGAACAGGTCTCTGAAAACAATTTTTAAATTTACAAATTCAAAAAAAATCACCCACCTCAATTTGGTTCAAATTCACAGAATCTTTCTGGGAATTTTCAGACTTCTCCCTATCAAATTCTAAATTTAATTTTTTCGAATCTTCCCTTTTTCTTTTTTTCGGATTCAAAATTTTTG</canonical>
            <polymorphic>TTTGACGTTTTTGGTGACTGGGTTACTGTAGCCAGTAGCTCATTGAGACGTTTGCTATCCAATTTTTTTGAAAATTCCAAAATCGGTCTGTTGGAATTTTGAGGACTCGTGATTGGAACAGGTTTTTGGACTCGAGGCGTCTGAAATCAATTTTTTCGAATTTCAAAAACTAATATTCGAAAAAACATACCGTATCCTTATTGAAATTTTGAGATGATGCTGAGTTTTCCTGTTCAACCAGAAAATCGAAAAGACTCATTTCTTTGGGAACCAGAACTTTTGGAGCTTTCGGAGCTGAAACTTGGGGTGACGTCTTCTGGAAAAGTGAAAATTTTAATTCTCAAAAAAGCCTGAAAAATTAGACTTACCGTATTCATACACTGGACCGACGATTGTGAATTTTGTGGTGTCAAAAATCTAGATATATTGAAATTTGCTAATTTTGAAGTTTCCAGAGCAGGTTTCTGAATTGGAGCAGTCTGAAATTTCAAAGATTATCMTTTTTAGATCTGGAATATTCCAAACTTACCGTACTCTTACATGGACCCGGAATTTCCAAAATTTCAGATAAACTGGAAGTGGAGGATTGTACAGAATTTTCCTCTGAATTTTCAGATTCCATTTTCCTCAAATTCTCCTCTTGAACCAAAAAATCGAAAAAGCTCAATTCTTTGGAATCCCGATTTTCTGAACTCTGGAAGATCAGTATTTCAGATTTCGAATCAATGAAAATGGGGACCTACCGTTTTCTTAACTTGCTCAAAACTCTGTGATAGTAATTGCAAAATTTCATCTAAATTGGGACATACCATATTCGAAGTTTTCAGAACAGGTCTCTGAAAACAATTTTTAAATTTACAAATTCAAAAAAAATCACCCACCTCAATTTGGTTCAAATTCACAGAATCTTTCTGGGAATTTTCAGACTTCTCCCTATCAAATTCTAAATTTAATTTTTTCGAATCTTCCCTTTTTCTTTTTTTCGGATTCAAAATTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTACCGTATTCATACACTGGAC</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTCAGAGGAAAATTCTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTACCGTATTCATACACTGGACCGACGATTGTGAATTTTGTGGTGTCAAAAATCTAGATATATTGAAATTTGCTAATTTTGAAGTTTCCAGAGCAGGTTTCTGAATTGGAGCAGTCTGAAATTTCAAAGATTATCATTTTTAGATCTGGAATATTCCAAACTTACCGTACTCTTACATGGACCCGGAATTTCCAAAATTTCAGATAAACTGGAAGTGGAGGATTGTACAGAATTTTCCTCTGAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTTACCGTATTCATACACTGGACCGACGATTGTGAATTTTGTGGTGTCAAAAATCTAGATATATTGAAATTTGCTAATTTTGAAGTTTCCAGAGCAGGTTTCTGAATTGGAGCAGTCTGAAATTTCAAAGATTATCMTTTTTAGATCTGGAATATTCCAAACTTACCGTACTCTTACATGGACCCGGAATTTCCAAAATTTCAGATAAACTGGAAGTGGAGGATTGTACAGAATTTTCCTCTGAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5569</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>81129</contig_pos>
        <strand>+</strand>
        <context>ACCAGAACTT[C/T]TGGAGCTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGTTCAACCAGAAAATCGAAAAGACTCATTTCTTTGGGAACCAGAACTT</left_flank>
        <right_flank>TGGAGCTTTCGGAGCTGAAACTTGGGGTGACGTCTTCTGGAAAAGTGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTTAAAACTCGATTTTTTGAAGTAGCTTCCTTTTCTTCGTTCAGAGTCCAAAGACACAAAATAAATGTTCTAAAAATAAAACATTTATATTTTCCCACCAACAATAAACCATCACATTTTCACAAATCAAAATATTTTGGAAATCAAATTTTGATCCAATTTTCTGTGTTTCTCATTATTCAACTCATTTCTCTGCTTCGAATTATTCAAATTTGATTTTGACGTTTTTGGTGACTGGGTTACTGTAGCCAGTAGCTCATTGAGACGTTTGCTATCCAATTTTTTTGAAAATTCCAAAATCGGTCTGTTGGAATTTTGAGGACTCGTGATTGGAACAGGTTTTTGGACTCGAGGCGTCTGAAATCAATTTTTTCGAATTTCAAAAACTAATATTCGAAAAAACATACCGTATCCTTATTGAAATTTTGAGATGATGCTGAGTTTTCCTGTTCAACCAGAAAATCGAAAAGACTCATTTCTTTGGGAACCAGAACTTTTGGAGCTTTCGGAGCTGAAACTTGGGGTGACGTCTTCTGGAAAAGTGAAAATTTTAATTCTCAAAAAAGCCTGAAAAATTAGACTTACCGTATTCATACACTGGACCGACGATTGTGAATTTTGTGGTGTCAAAAATCTAGATATATTGAAATTTGCTAATTTTGAAGTTTCCAGAGCAGGTTTCTGAATTGGAGCAGTCTGAAATTTCAAAGATTATCATTTTTAGATCTGGAATATTCCAAACTTACCGTACTCTTACATGGACCCGGAATTTCCAAAATTTCAGATAAACTGGAAGTGGAGGATTGTACAGAATTTTCCTCTGAATTTTCAGATTCCATTTTCCTCAAATTCTCCTCTTGAACCAAAAAATCGAAAAAGCTCAATTCTTTGGAATCCCGATTTTCTGAACTCTGGAAGATCAGTATTTCAGATTTCGAATCAATGAAAATGGGGACCTACCGTTTTCTTAACTTGCTCAAAACTCTGTGATAGTAAT</canonical>
            <polymorphic>TTTCTTAAAACTCGATTTTTTGAAGTAGCTTCCTTTTCTTCGTTCAGAGTCCAAAGACACAAAATAAATGTTCTAAAAATAAAACATTTATATTTTCCCACCAACAATAAACCATCACATTTTCACAAATCAAAATATTTTGGAAATCAAATTTTGATCCAATTTTCTGTGTTTCTCATTATTCAACTCATTTCTCTGCTTCGAATTATTCAAATTTGATTTTGACGTTTTTGGTGACTGGGTTACTGTAGCCAGTAGCTCATTGAGACGTTTGCTATCCAATTTTTTTGAAAATTCCAAAATCGGTCTGTTGGAATTTTGAGGACTCGTGATTGGAACAGGTTTTTGGACTCGAGGCGTCTGAAATCAATTTTTTCGAATTTCAAAAACTAATATTCGAAAAAACATACCGTATCCTTATTGAAATTTTGAGATGATGCTGAGTTTTCCTGTTCAACCAGAAAATCGAAAAGACTCATTTCTTTGGGAACCAGAACTTYTGGAGCTTTCGGAGCTGAAACTTGGGGTGACGTCTTCTGGAAAAGTGAAAATTTTAATTCTCAAAAAAGCCTGAAAAATTAGACTTACCGTATTCATACACTGGACCGACGATTGTGAATTTTGTGGTGTCAAAAATCTAGATATATTGAAATTTGCTAATTTTGAAGTTTCCAGAGCAGGTTTCTGAATTGGAGCAGTCTGAAATTTCAAAGATTATCATTTTTAGATCTGGAATATTCCAAACTTACCGTACTCTTACATGGACCCGGAATTTCCAAAATTTCAGATAAACTGGAAGTGGAGGATTGTACAGAATTTTCCTCTGAATTTTCAGATTCCATTTTCCTCAAATTCTCCTCTTGAACCAAAAAATCGAAAAAGCTCAATTCTTTGGAATCCCGATTTTCTGAACTCTGGAAGATCAGTATTTCAGATTTCGAATCAATGAAAATGGGGACCTACCGTTTTCTTAACTTGCTCAAAACTCTGTGATAGTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACATACCGTATCCTTATTGA</pcr_primer_p1>
		<pcr_primer_p2>ATATCTAGATTTTTGACACCACAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAAACATACCGTATCCTTATTGAAATTTTGAGATGATGCTGAGTTTTCCTGTTCAACCAGAAAATCGAAAAGACTCATTTCTTTGGGAACCAGAACTTTTGGAGCTTTCGGAGCTGAAACTTGGGGTGACGTCTTCTGGAAAAGTGAAAATTTTAATTCTCAAAAAAGCCTGAAAAATTAGACTTACCGTATTCATACACTGGACCGACGATTGTGAATTTTGTGGTGTCAAAAATCTAGATAT</canonical_amplicon>
		<polymorphic_amplicon>AAAACATACCGTATCCTTATTGAAATTTTGAGATGATGCTGAGTTTTCCTGTTCAACCAGAAAATCGAAAAGACTCATTTCTTTGGGAACCAGAACTTYTGGAGCTTTCGGAGCTGAAACTTGGGGTGACGTCTTCTGGAAAAGTGAAAATTTTAATTCTCAAAAAAGCCTGAAAAATTAGACTTACCGTATTCATACACTGGACCGACGATTGTGAATTTTGTGGTGTCAAAAATCTAGATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5570</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>80968</contig_pos>
        <strand>+</strand>
        <context>GTGATTGGAA[A/C]AGGTTTTTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGAAAATTCCAAAATCGGTCTGTTGGAATTTTGAGGACTCGTGATTGGAA</left_flank>
        <right_flank>AGGTTTTTGGACTCGAGGCGTCTGAAATCAATTTTTTCGAATTTCAAAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCGAGATGAAAAATTTTGGGATACAACACTTGGAGTAGAAATTTTCGATTTTTTTACGTGAACTCTCGAAAATCTTTCAAATAGGATTTTTAGAAAACGTATTTCAAAAGATGACAGGTCATTCTCATGAGCGAGGTCAGTTTCAACATCATTTCCCTTATTTCTTAAAACTCGATTTTTTGAAGTAGCTTCCTTTTCTTCGTTCAGAGTCCAAAGACACAAAATAAATGTTCTAAAAATAAAACATTTATATTTTCCCACCAACAATAAACCATCACATTTTCACAAATCAAAATATTTTGGAAATCAAATTTTGATCCAATTTTCTGTGTTTCTCATTATTCAACTCATTTCTCTGCTTCGAATTATTCAAATTTGATTTTGACGTTTTTGGTGACTGGGTTACTGTAGCCAGTAGCTCATTGAGACGTTTGCTATCCAATTTTTTTGAAAATTCCAAAATCGGTCTGTTGGAATTTTGAGGACTCGTGATTGGAACAGGTTTTTGGACTCGAGGCGTCTGAAATCAATTTTTTCGAATTTCAAAAACTAATATTCGAAAAAACATACCGTATCCTTATTGAAATTTTGAGATGATGCTGAGTTTTCCTGTTCAACCAGAAAATCGAAAAGACTCATTTCTTTGGGAACCAGAACTTTTGGAGCTTTCGGAGCTGAAACTTGGGGTGACGTCTTCTGGAAAAGTGAAAATTTTAATTCTCAAAAAAGCCTGAAAAATTAGACTTACCGTATTCATACACTGGACCGACGATTGTGAATTTTGTGGTGTCAAAAATCTAGATATATTGAAATTTGCTAATTTTGAAGTTTCCAGAGCAGGTTTCTGAATTGGAGCAGTCTGAAATTTCAAAGATTATCATTTTTAGATCTGGAATATTCCAAACTTACCGTACTCTTACATGGACCCGGAATTTCCAAAATTTCAGATAAACTGGAAGTGGAGGATTGTACAGAATTTTCCTCTGAATTTTCAGATTC</canonical>
            <polymorphic>TGCGAGATGAAAAATTTTGGGATACAACACTTGGAGTAGAAATTTTCGATTTTTTTACGTGAACTCTCGAAAATCTTTCAAATAGGATTTTTAGAAAACGTATTTCAAAAGATGACAGGTCATTCTCATGAGCGAGGTCAGTTTCAACATCATTTCCCTTATTTCTTAAAACTCGATTTTTTGAAGTAGCTTCCTTTTCTTCGTTCAGAGTCCAAAGACACAAAATAAATGTTCTAAAAATAAAACATTTATATTTTCCCACCAACAATAAACCATCACATTTTCACAAATCAAAATATTTTGGAAATCAAATTTTGATCCAATTTTCTGTGTTTCTCATTATTCAACTCATTTCTCTGCTTCGAATTATTCAAATTTGATTTTGACGTTTTTGGTGACTGGGTTACTGTAGCCAGTAGCTCATTGAGACGTTTGCTATCCAATTTTTTTGAAAATTCCAAAATCGGTCTGTTGGAATTTTGAGGACTCGTGATTGGAAMAGGTTTTTGGACTCGAGGCGTCTGAAATCAATTTTTTCGAATTTCAAAAACTAATATTCGAAAAAACATACCGTATCCTTATTGAAATTTTGAGATGATGCTGAGTTTTCCTGTTCAACCAGAAAATCGAAAAGACTCATTTCTTTGGGAACCAGAACTTTTGGAGCTTTCGGAGCTGAAACTTGGGGTGACGTCTTCTGGAAAAGTGAAAATTTTAATTCTCAAAAAAGCCTGAAAAATTAGACTTACCGTATTCATACACTGGACCGACGATTGTGAATTTTGTGGTGTCAAAAATCTAGATATATTGAAATTTGCTAATTTTGAAGTTTCCAGAGCAGGTTTCTGAATTGGAGCAGTCTGAAATTTCAAAGATTATCATTTTTAGATCTGGAATATTCCAAACTTACCGTACTCTTACATGGACCCGGAATTTCCAAAATTTCAGATAAACTGGAAGTGGAGGATTGTACAGAATTTTCCTCTGAATTTTCAGATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTTCTCTGCTTCGAATTAT</pcr_primer_p1>
		<pcr_primer_p2>CATCTCAAAATTTCAATAAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCATTTCTCTGCTTCGAATTATTCAAATTTGATTTTGACGTTTTTGGTGACTGGGTTACTGTAGCCAGTAGCTCATTGAGACGTTTGCTATCCAATTTTTTTGAAAATTCCAAAATCGGTCTGTTGGAATTTTGAGGACTCGTGATTGGAACAGGTTTTTGGACTCGAGGCGTCTGAAATCAATTTTTTCGAATTTCAAAAACTAATATTCGAAAAAACATACCGTATCCTTATTGAAATTTTGAGATG</canonical_amplicon>
		<polymorphic_amplicon>TCATTTCTCTGCTTCGAATTATTCAAATTTGATTTTGACGTTTTTGGTGACTGGGTTACTGTAGCCAGTAGCTCATTGAGACGTTTGCTATCCAATTTTTTTGAAAATTCCAAAATCGGTCTGTTGGAATTTTGAGGACTCGTGATTGGAAMAGGTTTTTGGACTCGAGGCGTCTGAAATCAATTTTTTCGAATTTCAAAAACTAATATTCGAAAAAACATACCGTATCCTTATTGAAATTTTGAGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5571</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>223377</contig_pos>
        <strand>+</strand>
        <context>GATTTGACAA[C/T]CCGAGYGCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAACAATGGAAAACCAACGAGTTCACTTCAAATTTTGTCGATTTGACAA</left_flank>
        <right_flank>CCGAGTGCCAATGATTATTATCAACTGTTGCAAGGCTGGCTGGCAATTGA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCGCAGCAAACTGCTTCCGTTCAATTACCGACGAAACAACTTATCTCCTCCATATACATGTTACATCCAACTCACTATTACCCAAGAAGATGCCACAACGATTCAGAGATATGAGTATAATCACAAACTCTACGAAGCCGCTAAGAAACTCAACGAAACTCTCTTCGCGAATCGTCATGTAATCATTGTCAATCATTTACAGAGTGCTTGTTTTGATGTTTTGCGTATGCCAATTGGATTAAAGATATCCGCTAAAGTTGTATCTGGAGATAGTAGACAATTAATCCCCATTTCTTCAATTGTGGACTCTTCGAAGCCTTTGCCTGAATTGAAAATTAATGTCACATCAGAATCAGCTTTGACTTTACAACACAGTTTTGTGAAAAATGCGGTAGTATTATCAATTTGGACACATAAGAACAGAGTCGATCAGCTTGCGAGGGCTTTTAAAACAATGGAAAACCAACGAGTTCACTTCAAATTTTGTCGATTTGACAATCCGAGTGCCAATGATTATTATCAACTGTTGCAAGGCTGGCTGGCAATTGAACGAAATGTTGGGTCCATGATAACGTTTGAATTGAATGCTGATCATATTGGTGAATCAATTTTAGAGTTGGTGAGAAATCAAAACGAAATAACAGAGAGTACTGATCGGTAATATGATATTTTTGATTACTTCATTTTCTAGCCAAATTTTCATTTCAGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGTCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAGAATTCTCGAAAAGATAATTGATACATTTTGAACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTATTTAGCATCAACTTTCTAGTCAAACTGTTCTCTACATTTTTTATTCCCAATTCTTCATTTTACTCCTTCAATCCCATTCGTTTGTCCCCATTTTTTGTTTCCGATT</canonical>
            <polymorphic>GTCGCAGCAAACTGCTTCCGTTCAATTACCGACGAAACAACTTATCTCCTCCATATACATGTTACATCCAACTCACTATTACCCAAGAAGATGCCACAACGATTCAGAGATATGAGTATAATCACAAACTCTACGAAGCCGCTAAGAAACTCAACGAAACTCTCTTCGCGAATCGTCATGTAATCATTGTCAATCATTTACAGAGTGCTTGTTTTGATGTTTTGCGTATGCCAATTGGATTAAAGATATCCGCTAAAGTTGTATCTGGAGATAGTAGACAATTAATCCCCATTTCTTCAATTGTGGACTCTTCGAAGCCTTTGCCTGAATTGAAAATTAATGTCACATCAGAATCAGCTTTGACTTTACAACACAGTTTTGTGAAAAATGCGGTAGTATTATCAATTTGGACACATAAGAACAGAGTCGATCAGCTTGCGAGGGCTTTTAAAACAATGGAAAACCAACGAGTTCACTTCAAATTTTGTCGATTTGACAAYCCGAGTGCCAATGATTATTATCAACTGTTGCAAGGCTGGCTGGCAATTGAACGAAATGTTGGGTCCATGATAACGTTTGAATTGAATGCTGATCATATTGGTGAATCAATTTTAGAGTTGGTGAGAAATCAAAACGAAATAACAGAGAGTACTGATCGGTAATATGATATTTTTGATTACTTCATTTTCTAGCCAAATTTTCATTTCAGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGTCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAGAATTCTCGAAAAGATAATTGATACATTTTGAACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTATTTAGCATCAACTTTCTAGTCAAACTGTTCTCTACATTTTTTATTCCCAATTCTTCATTTTACTCCTTCAATCCCATTCGTTTGTCCCCATTTTTTGTTTCCGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>288 244 206 152 106 4</canonical_bands>
                <polymorphic_bands>358 288 244 106 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAATGCGGTAGTATTATCAA</pcr_primer_p1>
		<pcr_primer_p2>TTGATTTCTCACCAACTCTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAAATGCGGTAGTATTATCAATTTGGACACATAAGAACAGAGTCGATCAGCTTGCGAGGGCTTTTAAAACAATGGAAAACCAACGAGTTCACTTCAAATTTTGTCGATTTGACAATCCGAGTGCCAATGATTATTATCAACTGTTGCAAGGCTGGCTGGCAATTGAACGAAATGTTGGGTCCATGATAACGTTTGAATTGAATGCTGATCATATTGGTGAATCAATTTTAGAGTTGGTGAGAAATCAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAATGCGGTAGTATTATCAATTTGGACACATAAGAACAGAGTCGATCAGCTTGCGAGGGCTTTTAAAACAATGGAAAACCAACGAGTTCACTTCAAATTTTGTCGATTTGACAAYCCGAGTGCCAATGATTATTATCAACTGTTGCAAGGCTGGCTGGCAATTGAACGAAATGTTGGGTCCATGATAACGTTTGAATTGAATGCTGATCATATTGGTGAATCAATTTTAGAGTTGGTGAGAAATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5572</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>223383</contig_pos>
        <strand>+</strand>
        <context>ACAAYCCGAG[C/T]GCCAATGAWT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGGAAAACCAACGAGTTCACTTCAAATTTTGTCGATTTGACAATCCGAG</left_flank>
        <right_flank>GCCAATGATTATTATCAACTGTTGCAAGGCTGGCTGGCAATTGAACGAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAAACTGCTTCCGTTCAATTACCGACGAAACAACTTATCTCCTCCATATACATGTTACATCCAACTCACTATTACCCAAGAAGATGCCACAACGATTCAGAGATATGAGTATAATCACAAACTCTACGAAGCCGCTAAGAAACTCAACGAAACTCTCTTCGCGAATCGTCATGTAATCATTGTCAATCATTTACAGAGTGCTTGTTTTGATGTTTTGCGTATGCCAATTGGATTAAAGATATCCGCTAAAGTTGTATCTGGAGATAGTAGACAATTAATCCCCATTTCTTCAATTGTGGACTCTTCGAAGCCTTTGCCTGAATTGAAAATTAATGTCACATCAGAATCAGCTTTGACTTTACAACACAGTTTTGTGAAAAATGCGGTAGTATTATCAATTTGGACACATAAGAACAGAGTCGATCAGCTTGCGAGGGCTTTTAAAACAATGGAAAACCAACGAGTTCACTTCAAATTTTGTCGATTTGACAATCCGAGTGCCAATGATTATTATCAACTGTTGCAAGGCTGGCTGGCAATTGAACGAAATGTTGGGTCCATGATAACGTTTGAATTGAATGCTGATCATATTGGTGAATCAATTTTAGAGTTGGTGAGAAATCAAAACGAAATAACAGAGAGTACTGATCGGTAATATGATATTTTTGATTACTTCATTTTCTAGCCAAATTTTCATTTCAGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGTCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAGAATTCTCGAAAAGATAATTGATACATTTTGAACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTATTTAGCATCAACTTTCTAGTCAAACTGTTCTCTACATTTTTTATTCCCAATTCTTCATTTTACTCCTTCAATCCCATTCGTTTGTCCCCATTTTTTGTTTCCGATTTTTATT</canonical>
            <polymorphic>GCAAACTGCTTCCGTTCAATTACCGACGAAACAACTTATCTCCTCCATATACATGTTACATCCAACTCACTATTACCCAAGAAGATGCCACAACGATTCAGAGATATGAGTATAATCACAAACTCTACGAAGCCGCTAAGAAACTCAACGAAACTCTCTTCGCGAATCGTCATGTAATCATTGTCAATCATTTACAGAGTGCTTGTTTTGATGTTTTGCGTATGCCAATTGGATTAAAGATATCCGCTAAAGTTGTATCTGGAGATAGTAGACAATTAATCCCCATTTCTTCAATTGTGGACTCTTCGAAGCCTTTGCCTGAATTGAAAATTAATGTCACATCAGAATCAGCTTTGACTTTACAACACAGTTTTGTGAAAAATGCGGTAGTATTATCAATTTGGACACATAAGAACAGAGTCGATCAGCTTGCGAGGGCTTTTAAAACAATGGAAAACCAACGAGTTCACTTCAAATTTTGTCGATTTGACAATCCGAGYGCCAATGATTATTATCAACTGTTGCAAGGCTGGCTGGCAATTGAACGAAATGTTGGGTCCATGATAACGTTTGAATTGAATGCTGATCATATTGGTGAATCAATTTTAGAGTTGGTGAGAAATCAAAACGAAATAACAGAGAGTACTGATCGGTAATATGATATTTTTGATTACTTCATTTTCTAGCCAAATTTTCATTTCAGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGTCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAGAATTCTCGAAAAGATAATTGATACATTTTGAACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTATTTAGCATCAACTTTCTAGTCAAACTGTTCTCTACATTTTTTATTCCCAATTCTTCATTTTACTCCTTCAATCCCATTCGTTTGTCCCCATTTTTTGTTTCCGATTTTTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>221 98 96 91 83 69 62 40 32 31 30 28 28 21 20 16 13 11 10</canonical_bands>
                <polymorphic_bands>221 128 98 91 83 69 62 40 31 30 28 28 21 20 16 13 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAATGCGGTAGTATTATCAA</pcr_primer_p1>
		<pcr_primer_p2>TTGATTTCTCACCAACTCTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAAATGCGGTAGTATTATCAATTTGGACACATAAGAACAGAGTCGATCAGCTTGCGAGGGCTTTTAAAACAATGGAAAACCAACGAGTTCACTTCAAATTTTGTCGATTTGACAATCCGAGTGCCAATGATTATTATCAACTGTTGCAAGGCTGGCTGGCAATTGAACGAAATGTTGGGTCCATGATAACGTTTGAATTGAATGCTGATCATATTGGTGAATCAATTTTAGAGTTGGTGAGAAATCAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAATGCGGTAGTATTATCAATTTGGACACATAAGAACAGAGTCGATCAGCTTGCGAGGGCTTTTAAAACAATGGAAAACCAACGAGTTCACTTCAAATTTTGTCGATTTGACAATCCGAGYGCCAATGATTATTATCAACTGTTGCAAGGCTGGCTGGCAATTGAACGAAATGTTGGGTCCATGATAACGTTTGAATTGAATGCTGATCATATTGGTGAATCAATTTTAGAGTTGGTGAGAAATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5573</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>223392</contig_pos>
        <strand>+</strand>
        <context>GYGCCAATGA[A/T]TATTATCAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAACGAGTTCACTTCAAATTTTGTCGATTTGACAATCCGAGTGCCAATGA</left_flank>
        <right_flank>TATTATCAACTGTTGCAAGGCTGGCTGGCAATTGAACGAAATGTTGGGTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCGTTCAATTACCGACGAAACAACTTATCTCCTCCATATACATGTTACATCCAACTCACTATTACCCAAGAAGATGCCACAACGATTCAGAGATATGAGTATAATCACAAACTCTACGAAGCCGCTAAGAAACTCAACGAAACTCTCTTCGCGAATCGTCATGTAATCATTGTCAATCATTTACAGAGTGCTTGTTTTGATGTTTTGCGTATGCCAATTGGATTAAAGATATCCGCTAAAGTTGTATCTGGAGATAGTAGACAATTAATCCCCATTTCTTCAATTGTGGACTCTTCGAAGCCTTTGCCTGAATTGAAAATTAATGTCACATCAGAATCAGCTTTGACTTTACAACACAGTTTTGTGAAAAATGCGGTAGTATTATCAATTTGGACACATAAGAACAGAGTCGATCAGCTTGCGAGGGCTTTTAAAACAATGGAAAACCAACGAGTTCACTTCAAATTTTGTCGATTTGACAATCCGAGTGCCAATGATTATTATCAACTGTTGCAAGGCTGGCTGGCAATTGAACGAAATGTTGGGTCCATGATAACGTTTGAATTGAATGCTGATCATATTGGTGAATCAATTTTAGAGTTGGTGAGAAATCAAAACGAAATAACAGAGAGTACTGATCGGTAATATGATATTTTTGATTACTTCATTTTCTAGCCAAATTTTCATTTCAGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGTCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAGAATTCTCGAAAAGATAATTGATACATTTTGAACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTATTTAGCATCAACTTTCTAGTCAAACTGTTCTCTACATTTTTTATTCCCAATTCTTCATTTTACTCCTTCAATCCCATTCGTTTGTCCCCATTTTTTGTTTCCGATTTTTATTCGTAATATT</canonical>
            <polymorphic>TTCCGTTCAATTACCGACGAAACAACTTATCTCCTCCATATACATGTTACATCCAACTCACTATTACCCAAGAAGATGCCACAACGATTCAGAGATATGAGTATAATCACAAACTCTACGAAGCCGCTAAGAAACTCAACGAAACTCTCTTCGCGAATCGTCATGTAATCATTGTCAATCATTTACAGAGTGCTTGTTTTGATGTTTTGCGTATGCCAATTGGATTAAAGATATCCGCTAAAGTTGTATCTGGAGATAGTAGACAATTAATCCCCATTTCTTCAATTGTGGACTCTTCGAAGCCTTTGCCTGAATTGAAAATTAATGTCACATCAGAATCAGCTTTGACTTTACAACACAGTTTTGTGAAAAATGCGGTAGTATTATCAATTTGGACACATAAGAACAGAGTCGATCAGCTTGCGAGGGCTTTTAAAACAATGGAAAACCAACGAGTTCACTTCAAATTTTGTCGATTTGACAATCCGAGTGCCAATGAWTATTATCAACTGTTGCAAGGCTGGCTGGCAATTGAACGAAATGTTGGGTCCATGATAACGTTTGAATTGAATGCTGATCATATTGGTGAATCAATTTTAGAGTTGGTGAGAAATCAAAACGAAATAACAGAGAGTACTGATCGGTAATATGATATTTTTGATTACTTCATTTTCTAGCCAAATTTTCATTTCAGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGTCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAGAATTCTCGAAAAGATAATTGATACATTTTGAACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTATTTAGCATCAACTTTCTAGTCAAACTGTTCTCTACATTTTTTATTCCCAATTCTTCATTTTACTCCTTCAATCCCATTCGTTTGTCCCCATTTTTTGTTTCCGATTTTTATTCGTAATATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATNNNNATC</site>
                <isoschizomers>
                    <enzyme>BsaBI</enzyme>
                    <enzyme>Bse8I</enzyme>
                    <enzyme>BseJI</enzyme>
                    <enzyme>BsiBI</enzyme>
                    <enzyme>BsrBRI</enzyme>
                    <enzyme>MamI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAATGCGGTAGTATTATCAA</pcr_primer_p1>
		<pcr_primer_p2>TTGATTTCTCACCAACTCTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAAATGCGGTAGTATTATCAATTTGGACACATAAGAACAGAGTCGATCAGCTTGCGAGGGCTTTTAAAACAATGGAAAACCAACGAGTTCACTTCAAATTTTGTCGATTTGACAATCCGAGTGCCAATGATTATTATCAACTGTTGCAAGGCTGGCTGGCAATTGAACGAAATGTTGGGTCCATGATAACGTTTGAATTGAATGCTGATCATATTGGTGAATCAATTTTAGAGTTGGTGAGAAATCAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAATGCGGTAGTATTATCAATTTGGACACATAAGAACAGAGTCGATCAGCTTGCGAGGGCTTTTAAAACAATGGAAAACCAACGAGTTCACTTCAAATTTTGTCGATTTGACAATCCGAGTGCCAATGAWTATTATCAACTGTTGCAAGGCTGGCTGGCAATTGAACGAAATGTTGGGTCCATGATAACGTTTGAATTGAATGCTGATCATATTGGTGAATCAATTTTAGAGTTGGTGAGAAATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5574</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>223542</contig_pos>
        <strand>+</strand>
        <context>ATCGGTAATA[C/T]GATATTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGTTGGTGAGAAATCAAAACGAAATAACAGAGAGTACTGATCGGTAATA</left_flank>
        <right_flank>GATATTTTTGATTACTTCATTTTCTAGCCAAATTTTCATTTCAGATGTGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGCGAATCGTCATGTAATCATTGTCAATCATTTACAGAGTGCTTGTTTTGATGTTTTGCGTATGCCAATTGGATTAAAGATATCCGCTAAAGTTGTATCTGGAGATAGTAGACAATTAATCCCCATTTCTTCAATTGTGGACTCTTCGAAGCCTTTGCCTGAATTGAAAATTAATGTCACATCAGAATCAGCTTTGACTTTACAACACAGTTTTGTGAAAAATGCGGTAGTATTATCAATTTGGACACATAAGAACAGAGTCGATCAGCTTGCGAGGGCTTTTAAAACAATGGAAAACCAACGAGTTCACTTCAAATTTTGTCGATTTGACAATCCGAGTGCCAATGATTATTATCAACTGTTGCAAGGCTGGCTGGCAATTGAACGAAATGTTGGGTCCATGATAACGTTTGAATTGAATGCTGATCATATTGGTGAATCAATTTTAGAGTTGGTGAGAAATCAAAACGAAATAACAGAGAGTACTGATCGGTAATATGATATTTTTGATTACTTCATTTTCTAGCCAAATTTTCATTTCAGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGTCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAGAATTCTCGAAAAGATAATTGATACATTTTGAACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTATTTAGCATCAACTTTCTAGTCAAACTGTTCTCTACATTTTTTATTCCCAATTCTTCATTTTACTCCTTCAATCCCATTCGTTTGTCCCCATTTTTTGTTTCCGATTTTTATTCGTAATATTCTCCATTTCTCTTTTTACTCCCATTTTCTTGTTCCCATTTTTCAATATCATTTCTTTGGCCGAAAAACAAATGACGATAATAAATGCATTTTTAATAATGATTCTGGAGGTTTAATACTGAAATGTTAGCACGAAATTAGAGTCATGCAA</canonical>
            <polymorphic>TCGCGAATCGTCATGTAATCATTGTCAATCATTTACAGAGTGCTTGTTTTGATGTTTTGCGTATGCCAATTGGATTAAAGATATCCGCTAAAGTTGTATCTGGAGATAGTAGACAATTAATCCCCATTTCTTCAATTGTGGACTCTTCGAAGCCTTTGCCTGAATTGAAAATTAATGTCACATCAGAATCAGCTTTGACTTTACAACACAGTTTTGTGAAAAATGCGGTAGTATTATCAATTTGGACACATAAGAACAGAGTCGATCAGCTTGCGAGGGCTTTTAAAACAATGGAAAACCAACGAGTTCACTTCAAATTTTGTCGATTTGACAATCCGAGTGCCAATGATTATTATCAACTGTTGCAAGGCTGGCTGGCAATTGAACGAAATGTTGGGTCCATGATAACGTTTGAATTGAATGCTGATCATATTGGTGAATCAATTTTAGAGTTGGTGAGAAATCAAAACGAAATAACAGAGAGTACTGATCGGTAATAYGATATTTTTGATTACTTCATTTTCTAGCCAAATTTTCATTTCAGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGTCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAGAATTCTCGAAAAGATAATTGATACATTTTGAACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTATTTAGCATCAACTTTCTAGTCAAACTGTTCTCTACATTTTTTATTCCCAATTCTTCATTTTACTCCTTCAATCCCATTCGTTTGTCCCCATTTTTTGTTTCCGATTTTTATTCGTAATATTCTCCATTTCTCTTTTTACTCCCATTTTCTTGTTCCCATTTTTCAATATCATTTCTTTGGCCGAAAAACAAATGACGATAATAAATGCATTTTTAATAATGATTCTGGAGGTTTAATACTGAAATGTTAGCACGAAATTAGAGTCATGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAATTGAATGCTGATCATA</pcr_primer_p1>
		<pcr_primer_p2>CTACGATTTCTCAATCCTGACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTGAATTGAATGCTGATCATATTGGTGAATCAATTTTAGAGTTGGTGAGAAATCAAAACGAAATAACAGAGAGTACTGATCGGTAATATGATATTTTTGATTACTTCATTTTCTAGCCAAATTTTCATTTCAGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGTCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAG</canonical_amplicon>
		<polymorphic_amplicon>TTTGAATTGAATGCTGATCATATTGGTGAATCAATTTTAGAGTTGGTGAGAAATCAAAACGAAATAACAGAGAGTACTGATCGGTAATAYGATATTTTTGATTACTTCATTTTCTAGCCAAATTTTCATTTCAGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGTCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5575</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>223571</contig_pos>
        <strand>+</strand>
        <context>ATTTTCTAGC[A/C]AAATTTTCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAGAGTACTGATCGGTAATATGATATTTTTGATTACTTCATTTTCTAGC</left_flank>
        <right_flank>AAATTTTCATTTCAGATGTGTTACAGTTCCACTGAGAAATGCCACAAAAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTACAGAGTGCTTGTTTTGATGTTTTGCGTATGCCAATTGGATTAAAGATATCCGCTAAAGTTGTATCTGGAGATAGTAGACAATTAATCCCCATTTCTTCAATTGTGGACTCTTCGAAGCCTTTGCCTGAATTGAAAATTAATGTCACATCAGAATCAGCTTTGACTTTACAACACAGTTTTGTGAAAAATGCGGTAGTATTATCAATTTGGACACATAAGAACAGAGTCGATCAGCTTGCGAGGGCTTTTAAAACAATGGAAAACCAACGAGTTCACTTCAAATTTTGTCGATTTGACAATCCGAGTGCCAATGATTATTATCAACTGTTGCAAGGCTGGCTGGCAATTGAACGAAATGTTGGGTCCATGATAACGTTTGAATTGAATGCTGATCATATTGGTGAATCAATTTTAGAGTTGGTGAGAAATCAAAACGAAATAACAGAGAGTACTGATCGGTAATATGATATTTTTGATTACTTCATTTTCTAGCCAAATTTTCATTTCAGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGTCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAGAATTCTCGAAAAGATAATTGATACATTTTGAACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTATTTAGCATCAACTTTCTAGTCAAACTGTTCTCTACATTTTTTATTCCCAATTCTTCATTTTACTCCTTCAATCCCATTCGTTTGTCCCCATTTTTTGTTTCCGATTTTTATTCGTAATATTCTCCATTTCTCTTTTTACTCCCATTTTCTTGTTCCCATTTTTCAATATCATTTCTTTGGCCGAAAAACAAATGACGATAATAAATGCATTTTTAATAATGATTCTGGAGGTTTAATACTGAAATGTTAGCACGAAATTAGAGTCATGCAAACTGGTGAATAAAAACTATTCTGATCTCA</canonical>
            <polymorphic>CATTTACAGAGTGCTTGTTTTGATGTTTTGCGTATGCCAATTGGATTAAAGATATCCGCTAAAGTTGTATCTGGAGATAGTAGACAATTAATCCCCATTTCTTCAATTGTGGACTCTTCGAAGCCTTTGCCTGAATTGAAAATTAATGTCACATCAGAATCAGCTTTGACTTTACAACACAGTTTTGTGAAAAATGCGGTAGTATTATCAATTTGGACACATAAGAACAGAGTCGATCAGCTTGCGAGGGCTTTTAAAACAATGGAAAACCAACGAGTTCACTTCAAATTTTGTCGATTTGACAATCCGAGTGCCAATGATTATTATCAACTGTTGCAAGGCTGGCTGGCAATTGAACGAAATGTTGGGTCCATGATAACGTTTGAATTGAATGCTGATCATATTGGTGAATCAATTTTAGAGTTGGTGAGAAATCAAAACGAAATAACAGAGAGTACTGATCGGTAATATGATATTTTTGATTACTTCATTTTCTAGCMAAATTTTCATTTCAGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGTCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAGAATTCTCGAAAAGATAATTGATACATTTTGAACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTATTTAGCATCAACTTTCTAGTCAAACTGTTCTCTACATTTTTTATTCCCAATTCTTCATTTTACTCCTTCAATCCCATTCGTTTGTCCCCATTTTTTGTTTCCGATTTTTATTCGTAATATTCTCCATTTCTCTTTTTACTCCCATTTTCTTGTTCCCATTTTTCAATATCATTTCTTTGGCCGAAAAACAAATGACGATAATAAATGCATTTTTAATAATGATTCTGGAGGTTTAATACTGAAATGTTAGCACGAAATTAGAGTCATGCAAACTGGTGAATAAAAACTATTCTGATCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>382 153 123 120 91 77 40 10 4</canonical_bands>
                <polymorphic_bands>535 123 120 91 77 40 10 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGAATTGAATGCTGATCATA</pcr_primer_p1>
		<pcr_primer_p2>CTACGATTTCTCAATCCTGACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTGAATTGAATGCTGATCATATTGGTGAATCAATTTTAGAGTTGGTGAGAAATCAAAACGAAATAACAGAGAGTACTGATCGGTAATATGATATTTTTGATTACTTCATTTTCTAGCCAAATTTTCATTTCAGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGTCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAG</canonical_amplicon>
		<polymorphic_amplicon>TTTGAATTGAATGCTGATCATATTGGTGAATCAATTTTAGAGTTGGTGAGAAATCAAAACGAAATAACAGAGAGTACTGATCGGTAATATGATATTTTTGATTACTTCATTTTCTAGCMAAATTTTCATTTCAGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGTCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5576</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>223628</contig_pos>
        <strand>+</strand>
        <context>AAACTCGAAG[C/T]CTTCTACGCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATTTCAGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAG</left_flank>
        <right_flank>CTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTAAAGTTGTATCTGGAGATAGTAGACAATTAATCCCCATTTCTTCAATTGTGGACTCTTCGAAGCCTTTGCCTGAATTGAAAATTAATGTCACATCAGAATCAGCTTTGACTTTACAACACAGTTTTGTGAAAAATGCGGTAGTATTATCAATTTGGACACATAAGAACAGAGTCGATCAGCTTGCGAGGGCTTTTAAAACAATGGAAAACCAACGAGTTCACTTCAAATTTTGTCGATTTGACAATCCGAGTGCCAATGATTATTATCAACTGTTGCAAGGCTGGCTGGCAATTGAACGAAATGTTGGGTCCATGATAACGTTTGAATTGAATGCTGATCATATTGGTGAATCAATTTTAGAGTTGGTGAGAAATCAAAACGAAATAACAGAGAGTACTGATCGGTAATATGATATTTTTGATTACTTCATTTTCTAGCCAAATTTTCATTTCAGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGTCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAGAATTCTCGAAAAGATAATTGATACATTTTGAACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTATTTAGCATCAACTTTCTAGTCAAACTGTTCTCTACATTTTTTATTCCCAATTCTTCATTTTACTCCTTCAATCCCATTCGTTTGTCCCCATTTTTTGTTTCCGATTTTTATTCGTAATATTCTCCATTTCTCTTTTTACTCCCATTTTCTTGTTCCCATTTTTCAATATCATTTCTTTGGCCGAAAAACAAATGACGATAATAAATGCATTTTTAATAATGATTCTGGAGGTTTAATACTGAAATGTTAGCACGAAATTAGAGTCATGCAAACTGGTGAATAAAAACTATTCTGATCTCAAAACAGTCTTTAGGTTTGAGATCTGAAAAAGTTCTAGGAACACAGAGAAAAAAGTCT</canonical>
            <polymorphic>GCTAAAGTTGTATCTGGAGATAGTAGACAATTAATCCCCATTTCTTCAATTGTGGACTCTTCGAAGCCTTTGCCTGAATTGAAAATTAATGTCACATCAGAATCAGCTTTGACTTTACAACACAGTTTTGTGAAAAATGCGGTAGTATTATCAATTTGGACACATAAGAACAGAGTCGATCAGCTTGCGAGGGCTTTTAAAACAATGGAAAACCAACGAGTTCACTTCAAATTTTGTCGATTTGACAATCCGAGTGCCAATGATTATTATCAACTGTTGCAAGGCTGGCTGGCAATTGAACGAAATGTTGGGTCCATGATAACGTTTGAATTGAATGCTGATCATATTGGTGAATCAATTTTAGAGTTGGTGAGAAATCAAAACGAAATAACAGAGAGTACTGATCGGTAATATGATATTTTTGATTACTTCATTTTCTAGCCAAATTTTCATTTCAGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGYCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAGAATTCTCGAAAAGATAATTGATACATTTTGAACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTATTTAGCATCAACTTTCTAGTCAAACTGTTCTCTACATTTTTTATTCCCAATTCTTCATTTTACTCCTTCAATCCCATTCGTTTGTCCCCATTTTTTGTTTCCGATTTTTATTCGTAATATTCTCCATTTCTCTTTTTACTCCCATTTTCTTGTTCCCATTTTTCAATATCATTTCTTTGGCCGAAAAACAAATGACGATAATAAATGCATTTTTAATAATGATTCTGGAGGTTTAATACTGAAATGTTAGCACGAAATTAGAGTCATGCAAACTGGTGAATAAAAACTATTCTGATCTCAAAACAGTCTTTAGGTTTGAGATCTGAAAAAGTTCTAGGAACACAGAGAAAAAAGTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAATTGAATGCTGATCATA</pcr_primer_p1>
		<pcr_primer_p2>CTACGATTTCTCAATCCTGACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTGAATTGAATGCTGATCATATTGGTGAATCAATTTTAGAGTTGGTGAGAAATCAAAACGAAATAACAGAGAGTACTGATCGGTAATATGATATTTTTGATTACTTCATTTTCTAGCCAAATTTTCATTTCAGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGTCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAG</canonical_amplicon>
		<polymorphic_amplicon>TTTGAATTGAATGCTGATCATATTGGTGAATCAATTTTAGAGTTGGTGAGAAATCAAAACGAAATAACAGAGAGTACTGATCGGTAATATGATATTTTTGATTACTTCATTTTCTAGCCAAATTTTCATTTCAGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGYCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5577</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>223730</contig_pos>
        <strand>+</strand>
        <context>TGATACATTT[C/T]GAACTCATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTCAGGATTGAGAAATCGTAGAATTCTCGAAAAGATAATTGATACATTT</left_flank>
        <right_flank>GAACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTATTTAGCATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGCTTTGACTTTACAACACAGTTTTGTGAAAAATGCGGTAGTATTATCAATTTGGACACATAAGAACAGAGTCGATCAGCTTGCGAGGGCTTTTAAAACAATGGAAAACCAACGAGTTCACTTCAAATTTTGTCGATTTGACAATCCGAGTGCCAATGATTATTATCAACTGTTGCAAGGCTGGCTGGCAATTGAACGAAATGTTGGGTCCATGATAACGTTTGAATTGAATGCTGATCATATTGGTGAATCAATTTTAGAGTTGGTGAGAAATCAAAACGAAATAACAGAGAGTACTGATCGGTAATATGATATTTTTGATTACTTCATTTTCTAGCCAAATTTTCATTTCAGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGTCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAGAATTCTCGAAAAGATAATTGATACATTTTGAACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTATTTAGCATCAACTTTCTAGTCAAACTGTTCTCTACATTTTTTATTCCCAATTCTTCATTTTACTCCTTCAATCCCATTCGTTTGTCCCCATTTTTTGTTTCCGATTTTTATTCGTAATATTCTCCATTTCTCTTTTTACTCCCATTTTCTTGTTCCCATTTTTCAATATCATTTCTTTGGCCGAAAAACAAATGACGATAATAAATGCATTTTTAATAATGATTCTGGAGGTTTAATACTGAAATGTTAGCACGAAATTAGAGTCATGCAAACTGGTGAATAAAAACTATTCTGATCTCAAAACAGTCTTTAGGTTTGAGATCTGAAAAAGTTCTAGGAACACAGAGAAAAAAGTCTGTTCTCAATCTGGGCCTTCTGGGAAGGTTGGTCTCCTACATACAGGTCTCCTACGACGTGAGTCATCATCGTCATCGGGGTCCCATCTACAGTAATGTCCTC</canonical>
            <polymorphic>TCAGCTTTGACTTTACAACACAGTTTTGTGAAAAATGCGGTAGTATTATCAATTTGGACACATAAGAACAGAGTCGATCAGCTTGCGAGGGCTTTTAAAACAATGGAAAACCAACGAGTTCACTTCAAATTTTGTCGATTTGACAATCCGAGTGCCAATGATTATTATCAACTGTTGCAAGGCTGGCTGGCAATTGAACGAAATGTTGGGTCCATGATAACGTTTGAATTGAATGCTGATCATATTGGTGAATCAATTTTAGAGTTGGTGAGAAATCAAAACGAAATAACAGAGAGTACTGATCGGTAATATGATATTTTTGATTACTTCATTTTCTAGCCAAATTTTCATTTCAGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGTCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAGAATTCTCGAAAAGATAATTGATACATTTYGAACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTATTTAGCATCAACTTTCTAGTCAAACTGTTCTCTACATTTTTTATTCCCAATTCTTCATTTTACTCCTTCAATCCCATTCGTTTGTCCCCATTTTTTGTTTCCGATTTTTATTCGTAATATTCTCCATTTCTCTTTTTACTCCCATTTTCTTGTTCCCATTTTTCAATATCATTTCTTTGGCCGAAAAACAAATGACGATAATAAATGCATTTTTAATAATGATTCTGGAGGTTTAATACTGAAATGTTAGCACGAAATTAGAGTCATGCAAACTGGTGAATAAAAACTATTCTGATCTCAAAACAGTCTTTAGGTTTGAGATCTGAAAAAGTTCTAGGAACACAGAGAAAAAAGTCTGTTCTCAATCTGGGCCTTCTGGGAAGGTTGGTCTCCTACATACAGGTCTCCTACGACGTGAGTCATCATCGTCATCGGGGTCCCATCTACAGTAATGTCCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATGTGTTACAGTTCCACTGAG</pcr_primer_p1>
		<pcr_primer_p2>TAAAATGAAGAATTGGGAATAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGTCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAGAATTCTCGAAAAGATAATTGATACATTTTGAACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTATTTAGCATCAACTTTCTAGTCAAACTGTTCTCTACATTTTTTATTCCCAATTCTTCATTTTA</canonical_amplicon>
		<polymorphic_amplicon>AGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGTCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAGAATTCTCGAAAAGATAATTGATACATTTYGAACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTATTTAGCATCAACTTTCTAGTCAAACTGTTCTCTACATTTTTTATTCCCAATTCTTCATTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5578</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>223773</contig_pos>
        <strand>+</strand>
        <context>CTTAATTTAT[G/T]TAGCATCAAM</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TACATTTTGAACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTAT</left_flank>
        <right_flank>TAGCATCAACTTTCTAGTCAAACTGTTCTCTACATTTTTTATTCCCAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTATCAATTTGGACACATAAGAACAGAGTCGATCAGCTTGCGAGGGCTTTTAAAACAATGGAAAACCAACGAGTTCACTTCAAATTTTGTCGATTTGACAATCCGAGTGCCAATGATTATTATCAACTGTTGCAAGGCTGGCTGGCAATTGAACGAAATGTTGGGTCCATGATAACGTTTGAATTGAATGCTGATCATATTGGTGAATCAATTTTAGAGTTGGTGAGAAATCAAAACGAAATAACAGAGAGTACTGATCGGTAATATGATATTTTTGATTACTTCATTTTCTAGCCAAATTTTCATTTCAGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGTCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAGAATTCTCGAAAAGATAATTGATACATTTTGAACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTATTTAGCATCAACTTTCTAGTCAAACTGTTCTCTACATTTTTTATTCCCAATTCTTCATTTTACTCCTTCAATCCCATTCGTTTGTCCCCATTTTTTGTTTCCGATTTTTATTCGTAATATTCTCCATTTCTCTTTTTACTCCCATTTTCTTGTTCCCATTTTTCAATATCATTTCTTTGGCCGAAAAACAAATGACGATAATAAATGCATTTTTAATAATGATTCTGGAGGTTTAATACTGAAATGTTAGCACGAAATTAGAGTCATGCAAACTGGTGAATAAAAACTATTCTGATCTCAAAACAGTCTTTAGGTTTGAGATCTGAAAAAGTTCTAGGAACACAGAGAAAAAAGTCTGTTCTCAATCTGGGCCTTCTGGGAAGGTTGGTCTCCTACATACAGGTCTCCTACGACGTGAGTCATCATCGTCATCGGGGTCCCATCTACAGTAATGTCCTCATAGAGGCAGATGTCTTTTTTTTTCATTTATCTGTTCTTCTTC</canonical>
            <polymorphic>TATTATCAATTTGGACACATAAGAACAGAGTCGATCAGCTTGCGAGGGCTTTTAAAACAATGGAAAACCAACGAGTTCACTTCAAATTTTGTCGATTTGACAATCCGAGTGCCAATGATTATTATCAACTGTTGCAAGGCTGGCTGGCAATTGAACGAAATGTTGGGTCCATGATAACGTTTGAATTGAATGCTGATCATATTGGTGAATCAATTTTAGAGTTGGTGAGAAATCAAAACGAAATAACAGAGAGTACTGATCGGTAATATGATATTTTTGATTACTTCATTTTCTAGCCAAATTTTCATTTCAGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGTCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAGAATTCTCGAAAAGATAATTGATACATTTTGAACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTATKTAGCATCAACTTTCTAGTCAAACTGTTCTCTACATTTTTTATTCCCAATTCTTCATTTTACTCCTTCAATCCCATTCGTTTGTCCCCATTTTTTGTTTCCGATTTTTATTCGTAATATTCTCCATTTCTCTTTTTACTCCCATTTTCTTGTTCCCATTTTTCAATATCATTTCTTTGGCCGAAAAACAAATGACGATAATAAATGCATTTTTAATAATGATTCTGGAGGTTTAATACTGAAATGTTAGCACGAAATTAGAGTCATGCAAACTGGTGAATAAAAACTATTCTGATCTCAAAACAGTCTTTAGGTTTGAGATCTGAAAAAGTTCTAGGAACACAGAGAAAAAAGTCTGTTCTCAATCTGGGCCTTCTGGGAAGGTTGGTCTCCTACATACAGGTCTCCTACGACGTGAGTCATCATCGTCATCGGGGTCCCATCTACAGTAATGTCCTCATAGAGGCAGATGTCTTTTTTTTTCATTTATCTGTTCTTCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATGTGTTACAGTTCCACTGAG</pcr_primer_p1>
		<pcr_primer_p2>TAAAATGAAGAATTGGGAATAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGTCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAGAATTCTCGAAAAGATAATTGATACATTTTGAACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTATTTAGCATCAACTTTCTAGTCAAACTGTTCTCTACATTTTTTATTCCCAATTCTTCATTTTA</canonical_amplicon>
		<polymorphic_amplicon>AGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGTCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAGAATTCTCGAAAAGATAATTGATACATTTTGAACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTATKTAGCATCAACTTTCTAGTCAAACTGTTCTCTACATTTTTTATTCCCAATTCTTCATTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5579</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>223783</contig_pos>
        <strand>+</strand>
        <context>KTAGCATCAA[A/C]TTTCTAGTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTATTTAGCATCAA</left_flank>
        <right_flank>TTTCTAGTCAAACTGTTCTCTACATTTTTTATTCCCAATTCTTCATTTTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGACACATAAGAACAGAGTCGATCAGCTTGCGAGGGCTTTTAAAACAATGGAAAACCAACGAGTTCACTTCAAATTTTGTCGATTTGACAATCCGAGTGCCAATGATTATTATCAACTGTTGCAAGGCTGGCTGGCAATTGAACGAAATGTTGGGTCCATGATAACGTTTGAATTGAATGCTGATCATATTGGTGAATCAATTTTAGAGTTGGTGAGAAATCAAAACGAAATAACAGAGAGTACTGATCGGTAATATGATATTTTTGATTACTTCATTTTCTAGCCAAATTTTCATTTCAGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGTCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAGAATTCTCGAAAAGATAATTGATACATTTTGAACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTATTTAGCATCAACTTTCTAGTCAAACTGTTCTCTACATTTTTTATTCCCAATTCTTCATTTTACTCCTTCAATCCCATTCGTTTGTCCCCATTTTTTGTTTCCGATTTTTATTCGTAATATTCTCCATTTCTCTTTTTACTCCCATTTTCTTGTTCCCATTTTTCAATATCATTTCTTTGGCCGAAAAACAAATGACGATAATAAATGCATTTTTAATAATGATTCTGGAGGTTTAATACTGAAATGTTAGCACGAAATTAGAGTCATGCAAACTGGTGAATAAAAACTATTCTGATCTCAAAACAGTCTTTAGGTTTGAGATCTGAAAAAGTTCTAGGAACACAGAGAAAAAAGTCTGTTCTCAATCTGGGCCTTCTGGGAAGGTTGGTCTCCTACATACAGGTCTCCTACGACGTGAGTCATCATCGTCATCGGGGTCCCATCTACAGTAATGTCCTCATAGAGGCAGATGTCTTTTTTTTTCATTTATCTGTTCTTCTTCCTCTCCCACA</canonical>
            <polymorphic>TTGGACACATAAGAACAGAGTCGATCAGCTTGCGAGGGCTTTTAAAACAATGGAAAACCAACGAGTTCACTTCAAATTTTGTCGATTTGACAATCCGAGTGCCAATGATTATTATCAACTGTTGCAAGGCTGGCTGGCAATTGAACGAAATGTTGGGTCCATGATAACGTTTGAATTGAATGCTGATCATATTGGTGAATCAATTTTAGAGTTGGTGAGAAATCAAAACGAAATAACAGAGAGTACTGATCGGTAATATGATATTTTTGATTACTTCATTTTCTAGCCAAATTTTCATTTCAGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGTCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAGAATTCTCGAAAAGATAATTGATACATTTTGAACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTATTTAGCATCAAMTTTCTAGTCAAACTGTTCTCTACATTTTTTATTCCCAATTCTTCATTTTACTCCTTCAATCCCATTCGTTTGTCCCCATTTTTTGTTTCCGATTTTTATTCGTAATATTCTCCATTTCTCTTTTTACTCCCATTTTCTTGTTCCCATTTTTCAATATCATTTCTTTGGCCGAAAAACAAATGACGATAATAAATGCATTTTTAATAATGATTCTGGAGGTTTAATACTGAAATGTTAGCACGAAATTAGAGTCATGCAAACTGGTGAATAAAAACTATTCTGATCTCAAAACAGTCTTTAGGTTTGAGATCTGAAAAAGTTCTAGGAACACAGAGAAAAAAGTCTGTTCTCAATCTGGGCCTTCTGGGAAGGTTGGTCTCCTACATACAGGTCTCCTACGACGTGAGTCATCATCGTCATCGGGGTCCCATCTACAGTAATGTCCTCATAGAGGCAGATGTCTTTTTTTTTCATTTATCTGTTCTTCTTCCTCTCCCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAGTCAGGATTGAGAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAGAAAATGGGAGTAAAAAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAGTCAGGATTGAGAAATCGTAGAATTCTCGAAAAGATAATTGATACATTTTGAACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTATTTAGCATCAACTTTCTAGTCAAACTGTTCTCTACATTTTTTATTCCCAATTCTTCATTTTACTCCTTCAATCCCATTCGTTTGTCCCCATTTTTTGTTTCCGATTTTTATTCGTAATATTCTCCATTTCTCTTTTTACTCCCATTTTCTT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAGTCAGGATTGAGAAATCGTAGAATTCTCGAAAAGATAATTGATACATTTTGAACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTATTTAGCATCAAMTTTCTAGTCAAACTGTTCTCTACATTTTTTATTCCCAATTCTTCATTTTACTCCTTCAATCCCATTCGTTTGTCCCCATTTTTTGTTTCCGATTTTTATTCGTAATATTCTCCATTTCTCTTTTTACTCCCATTTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5580</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>225606</contig_pos>
        <strand>+</strand>
        <context>CTGAAACGCT[C/T]TCAATTTATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTGTAGTCTCGAATTTCTCACACAGTCTTGTGAAAAATGCTGAAACGCT</left_flank>
        <right_flank>TCAATTTATATAAATGAGGGAAGAATTAATCAGCTCGCGATCGCTTTGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGACGACTTTTTAGCTGGACCAATGAATGAGGATGATCAACGTATTAGACGCACTTTGGAAATCCCCAAGGAACAGTTACAATCAGGAGTTAATCGATACCGCAGCGCACTACTTCCGTTCCATTACCGACGAAACAACTTATCTCCTCCGTATACATGTTACATCCAACTGACCATTATCCAAGGAAATGTCACAAATATTCAGAGATATGAGTATAATCATAAACTCTACGAAGCCTCTAAGAAACTCAACGAAATTCTCTTTGTGAATCGTTCTGTAATTATTGCCGATCACTTCCAGAATACATGTGCCGATGTTTTGCGTACACCGATTGGATTCAAAATATTTGCTAATAATGTATACGGATATAATTTCCAAATAATCCCTATGTCTTCAATTGTCGATTCTTCGAGAGCTTTGCCCGAATTGAGCATTAGTGTCACATCCGGTGTAGTCTCGAATTTCTCACACAGTCTTGTGAAAAATGCTGAAACGCTCTCAATTTATATAAATGAGGGAAGAATTAATCAGCTCGCGATCGCTTTGGAAACTATGGAAAATCAACACATTCACATCCAATTTGGCCAATTCGATAACCCGAGCCCAAATGAATATTTTCAATTGTTGCACGGCTGGCTGGCAACAGAACGCAGTGTCGGATTGATGATTACGTCTGGATTGAAAACTGATCAAATTGGAGAAGAAATCTTAGAGTTAGTGAGAAATGGAAACGAGAGAACACAGAGTACTGACGGGTAACTCAACATTTAACTTCAATTTAGTTCCAATTATTCATTTCAGGTCAGTCACAGTTCTTCGGAGTAATGCTACAATACTCGAAGTTTTTTATGTGCCTAATAACGAGGAGGAAAACTTGTCCAGATTCATTCTCGCAGCTAGGATTAAGAGAGCGTAGAATTCTCAGAAAGGTAATCGATCAATGAGATTTTTAACCCAATTTGTCGTTGCCATCATTTTCATTTCGTGTTCCAATTATT</canonical>
            <polymorphic>TCGACGACTTTTTAGCTGGACCAATGAATGAGGATGATCAACGTATTAGACGCACTTTGGAAATCCCCAAGGAACAGTTACAATCAGGAGTTAATCGATACCGCAGCGCACTACTTCCGTTCCATTACCGACGAAACAACTTATCTCCTCCGTATACATGTTACATCCAACTGACCATTATCCAAGGAAATGTCACAAATATTCAGAGATATGAGTATAATCATAAACTCTACGAAGCCTCTAAGAAACTCAACGAAATTCTCTTTGTGAATCGTTCTGTAATTATTGCCGATCACTTCCAGAATACATGTGCCGATGTTTTGCGTACACCGATTGGATTCAAAATATTTGCTAATAATGTATACGGATATAATTTCCAAATAATCCCTATGTCTTCAATTGTCGATTCTTCGAGAGCTTTGCCCGAATTGAGCATTAGTGTCACATCCGGTGTAGTCTCGAATTTCTCACACAGTCTTGTGAAAAATGCTGAAACGCTYTCAATTTATATAAATGAGGGAAGAATTAATCAGCTCGCGATCGCTTTGGAAACTATGGAAAATCAACACATTCACATCCAATTTGGCCAATTCGATAACCCGAGCCCAAATGAATATTTTCAATTGTTGCACGGCTGGCTGGCAACAGAACGCAGTGTCGGATTGATGATTACGTCTGGATTGAAAACTGATCAAATTGGAGAAGAAATCTTAGAGTTAGTGAGAAATGGAAACGAGAGAACACAGAGTACTGACGGGTAACTCAACATTTAACTTCAATTTAGTTCCAATTATTCATTTCAGGTCAGTCACAGTTCTTCGGAGTAATGCTACAATACTCGAAGTTTTTTATGTGCCTAATAACGAGGAGGAAAACTTGTCCAGATTCATTCTCGCAGCTAGGATTAAGAGAGCGTAGAATTCTCAGAAAGGTAATCGATCAATGAGATTTTTAACCCAATTTGTCGTTGCCATCATTTTCATTTCGTGTTCCAATTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTGTCACATCCGGTGTAGT</pcr_primer_p1>
		<pcr_primer_p2>AATCCAGACGTAATCATCAATC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TAGTGTCACATCCGGTGTAGTCTCGAATTTCTCACACAGTCTTGTGAAAAATGCTGAAACGCTCTCAATTTATATAAATGAGGGAAGAATTAATCAGCTCGCGATCGCTTTGGAAACTATGGAAAATCAACACATTCACATCCAATTTGGCCAATTCGATAACCCGAGCCCAAATGAATATTTTCAATTGTTGCACGGCTGGCTGGCAACAGAACGCAGTGTCGGATTGATGATTACGTCTGGATT</canonical_amplicon>
		<polymorphic_amplicon>TAGTGTCACATCCGGTGTAGTCTCGAATTTCTCACACAGTCTTGTGAAAAATGCTGAAACGCTYTCAATTTATATAAATGAGGGAAGAATTAATCAGCTCGCGATCGCTTTGGAAACTATGGAAAATCAACACATTCACATCCAATTTGGCCAATTCGATAACCCGAGCCCAAATGAATATTTTCAATTGTTGCACGGCTGGCTGGCAACAGAACGCAGTGTCGGATTGATGATTACGTCTGGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5581</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>225510</contig_pos>
        <strand>+</strand>
        <context>CTTCAATTGT[C/G]GATTCTTCGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATAATGTATACGGATATAATTTCCAAATAATCCCTATGTCTTCAATTGT</left_flank>
        <right_flank>GATTCTTCGAGAGCTTTGCCCGAATTGAGCATTAGTGTCACATCCGGTGT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATACAGAAGAAAGAGAGCAACGTTTGCAGTTCTCACTGAGAAGATATGAAGAAGCTCTAGCAAAAATCAATCAATTGGAATCGGAGGGAAAAACGGTCGACGACTTTTTAGCTGGACCAATGAATGAGGATGATCAACGTATTAGACGCACTTTGGAAATCCCCAAGGAACAGTTACAATCAGGAGTTAATCGATACCGCAGCGCACTACTTCCGTTCCATTACCGACGAAACAACTTATCTCCTCCGTATACATGTTACATCCAACTGACCATTATCCAAGGAAATGTCACAAATATTCAGAGATATGAGTATAATCATAAACTCTACGAAGCCTCTAAGAAACTCAACGAAATTCTCTTTGTGAATCGTTCTGTAATTATTGCCGATCACTTCCAGAATACATGTGCCGATGTTTTGCGTACACCGATTGGATTCAAAATATTTGCTAATAATGTATACGGATATAATTTCCAAATAATCCCTATGTCTTCAATTGTCGATTCTTCGAGAGCTTTGCCCGAATTGAGCATTAGTGTCACATCCGGTGTAGTCTCGAATTTCTCACACAGTCTTGTGAAAAATGCTGAAACGCTCTCAATTTATATAAATGAGGGAAGAATTAATCAGCTCGCGATCGCTTTGGAAACTATGGAAAATCAACACATTCACATCCAATTTGGCCAATTCGATAACCCGAGCCCAAATGAATATTTTCAATTGTTGCACGGCTGGCTGGCAACAGAACGCAGTGTCGGATTGATGATTACGTCTGGATTGAAAACTGATCAAATTGGAGAAGAAATCTTAGAGTTAGTGAGAAATGGAAACGAGAGAACACAGAGTACTGACGGGTAACTCAACATTTAACTTCAATTTAGTTCCAATTATTCATTTCAGGTCAGTCACAGTTCTTCGGAGTAATGCTACAATACTCGAAGTTTTTTATGTGCCTAATAACGAGGAGGAAAACTTGTCCAGATTCATTCTCGCAGCTAGGA</canonical>
            <polymorphic>ATACAGAAGAAAGAGAGCAACGTTTGCAGTTCTCACTGAGAAGATATGAAGAAGCTCTAGCAAAAATCAATCAATTGGAATCGGAGGGAAAAACGGTCGACGACTTTTTAGCTGGACCAATGAATGAGGATGATCAACGTATTAGACGCACTTTGGAAATCCCCAAGGAACAGTTACAATCAGGAGTTAATCGATACCGCAGCGCACTACTTCCGTTCCATTACCGACGAAACAACTTATCTCCTCCGTATACATGTTACATCCAACTGACCATTATCCAAGGAAATGTCACAAATATTCAGAGATATGAGTATAATCATAAACTCTACGAAGCCTCTAAGAAACTCAACGAAATTCTCTTTGTGAATCGTTCTGTAATTATTGCCGATCACTTCCAGAATACATGTGCCGATGTTTTGCGTACACCGATTGGATTCAAAATATTTGCTAATAATGTATACGGATATAATTTCCAAATAATCCCTATGTCTTCAATTGTSGATTCTTCGAGAGCTTTGCCCGAATTGAGCATTAGTGTCACATCCGGTGTAGTCTCGAATTTCTCACACAGTCTTGTGAAAAATGCTGAAACGCTCTCAATTTATATAAATGAGGGAAGAATTAATCAGCTCGCGATCGCTTTGGAAACTATGGAAAATCAACACATTCACATCCAATTTGGCCAATTCGATAACCCGAGCCCAAATGAATATTTTCAATTGTTGCACGGCTGGCTGGCAACAGAACGCAGTGTCGGATTGATGATTACGTCTGGATTGAAAACTGATCAAATTGGAGAAGAAATCTTAGAGTTAGTGAGAAATGGAAACGAGAGAACACAGAGTACTGACGGGTAACTCAACATTTAACTTCAATTTAGTTCCAATTATTCATTTCAGGTCAGTCACAGTTCTTCGGAGTAATGCTACAATACTCGAAGTTTTTTATGTGCCTAATAACGAGGAGGAAAACTTGTCCAGATTCATTCTCGCAGCTAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>308 247 133 98 94 64 48 8</canonical_bands>
                <polymorphic_bands>316 247 133 98 94 64 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCTACGAAGCCTCTAAGAAAC</pcr_primer_p1>
		<pcr_primer_p2>ACTGTGTGAGAAATTCGAGACTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTCTACGAAGCCTCTAAGAAACTCAACGAAATTCTCTTTGTGAATCGTTCTGTAATTATTGCCGATCACTTCCAGAATACATGTGCCGATGTTTTGCGTACACCGATTGGATTCAAAATATTTGCTAATAATGTATACGGATATAATTTCCAAATAATCCCTATGTCTTCAATTGTCGATTCTTCGAGAGCTTTGCCCGAATTGAGCATTAGTGTCACATCCGGTGTAGTCTCGAATTTCTCACACAGT</canonical_amplicon>
		<polymorphic_amplicon>ACTCTACGAAGCCTCTAAGAAACTCAACGAAATTCTCTTTGTGAATCGTTCTGTAATTATTGCCGATCACTTCCAGAATACATGTGCCGATGTTTTGCGTACACCGATTGGATTCAAAATATTTGCTAATAATGTATACGGATATAATTTCCAAATAATCCCTATGTCTTCAATTGTSGATTCTTCGAGAGCTTTGCCCGAATTGAGCATTAGTGTCACATCCGGTGTAGTCTCGAATTTCTCACACAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5582</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>229331</contig_pos>
        <strand></strand>
        <context>CACAGTATTC[T/A]AATCTCTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTCTTAAGAATTCTTTTCAGCATCATTCTGAATACCTCTCACAGTATTC</left_flank>
        <right_flank>AATCTCTCCAATTTCGTCATATACGAACCAAATTTTTGGCTCTACTTTGT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTTCAGGAGTCTAAAGCTCGACTGTCCAGTTTCCAAACACTTTGAAAATTTTAGAGGTTTTAAAAGAGACCTAGATTGAAAAGTTTGCATTCACAGAAGTTTCTGAAAATTTCTAGTTTTTTCAGATATTTGCCGATTTCTGGAAGACTCTTCGTTTAACCCGTTTTAGTACTGAAAATGTGAAAAGGGGATCTTCAGAAATCGGCAAATAGCTGAAAAACTAGGAATTTTTGAAGAATTATGTAAATGCAAAATGTTCAATCTAGGTATGTTTCACACTCTCCGAAATTTTCAAAGTGATCGAAAACTTGACAGCCGAGCTCTGGACACCTGAAAAAGGCCAAAACCAACTAAAAAAAATACATTTTTAAGATATCTTATTGATCGGTACTGTATACCCGAAAACCTGTAATAGAAGGGCTCCATACCTTTCAACTTTGATCCTATTTCTTAAGAATTCTTTTCAGCATCATTCTGAATACCTCTCACAGTATTCTAATCTCTCCAATTTCGTCATATACGAACCAAATTTTTGGCTCTACTTTGTAATCTGGTTTGGGTTCTTTGGTGGAATATTCACTGGATTTGTTTTCACCTTTACCACGGTGGACATGTTCAAAATGTTGGGAAAATCGAGACGAAAAATATCTGTGACAAATTTCAAAAGACACCGATCTACTGTTAAAAGTCTATTGGCACAGTTTGCAGCTTCTTCTCTTCTATTAGTCCCGTTATTTTGTTTTACTCTGGTTGTGATGGGTGAATTCGAACATTCTCAAATGATGATTAATATTATTTTGGCAGTTTTTTCCTTGAGATCTTCAGTGAATGCATTGGTTCTAATCGTGACGACTCCTTCGTTTAGGAAGTTTATTTTGAGGTGAGTGACTTGGAAAAATAATTGATTAAGTTGCTTTTTGAAGAAGTTCGAAAGCATAATTTAAAAAAAATGTTTTTAGAGACGAAAATTTTTGCATGGTCGCCAAAAAATTTTTAA</canonical>
            <polymorphic>CATTTTCAGGAGTCTAAAGCTCGACTGTCCAGTTTCCAAACACTTTGAAAATTTTAGAGGTTTTAAAAGAGACCTAGATTGAAAAGTTTGCATTCACAGAAGTTTCTGAAAATTTCTAGTTTTTTCAGATATTTGCCGATTTCTGGAAGACTCTTCGTTTAACCCGTTTTAGTACTGAAAATGTGAAAAGGGGATCTTCAGAAATCGGCAAATAGCTGAAAAACTAGGAATTTTTGAAGAATTATGTAAATGCAAAATGTTCAATCTAGGTATGTTTCACACTCTCCGAAATTTTCAAAGTGATCGAAAACTTGACAGCCGAGCTCTGGACACCTGAAAAAGGCCAAAACCAACTAAAAAAAATACATTTTTAAGATATCTTATTGATCGGTACTGTATACCCGAAAACCTGTAATAGAAGGGCTCCATACCTTTCAACTTTGATCCTATTTCTTAAGAATTCTTTTCAGCATCATTCTGAATACCTCTCACAGTATTCWAATCTCTCCAATTTCGTCATATACGAACCAAATTTTTGGCTCTACTTTGTAATCTGGTTTGGGTTCTTTGGTGGAATATTCACTGGATTTGTTTTCACCTTTACCACGGTGGACATGTTCAAAATGTTGGGAAAATCGAGACGAAAAATATCTGTGACAAATTTCAAAAGACACCGATCTACTGTTAAAAGTCTATTGGCACAGTTTGCAGCTTCTTCTCTTCTATTAGTCCCGTTATTTTGTTTTACTCTGGTTGTGATGGGTGAATTCGAACATTCTCAAATGATGATTAATATTATTTTGGCAGTTTTTTCCTTGAGATCTTCAGTGAATGCATTGGTTCTAATCGTGACGACTCCTTCGTTTAGGAAGTTTATTTTGAGGTGAGTGACTTGGAAAAATAATTGATTAAGTTGCTTTTTGAAGAAGTTCGAAAGCATAATTTAAAAAAAATGTTTTTAGAGACGAAAATTTTTGCATGGTCGCCAAAAAATTTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCGTACAGTGATTAGTGATTAG</pcr_primer_p1>
		<pcr_primer_p2>CAAACCAGATTACAAAGTAGAGC</pcr_primer_p2>
		<pcr_amplicon_size>790</pcr_amplicon_size>
		<canonical_amplicon>CTAATCTCTCCAATTTCGTCATATACGAACCAAATTTTTGGCTCTACTTTGTAATCTGGTTTG</canonical_amplicon>
		<polymorphic_amplicon>CWAATCTCTCCAATTTCGTCATATACGAACCAAATTTTTGGCTCTACTTTGTAATCTGGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5583</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>229367</contig_pos>
        <strand></strand>
        <context>AACCAAATTT[T/C]TGGCTCTACT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTCTCACAGTATTCTAATCTCTCCAATTTCGTCATATACGAACCAAATTT</left_flank>
        <right_flank>TGGCTCTACTTTGTAATCTGGTTTGGGTTCTTTGGTGGAATATTCACTGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAACACTTTGAAAATTTTAGAGGTTTTAAAAGAGACCTAGATTGAAAAGTTTGCATTCACAGAAGTTTCTGAAAATTTCTAGTTTTTTCAGATATTTGCCGATTTCTGGAAGACTCTTCGTTTAACCCGTTTTAGTACTGAAAATGTGAAAAGGGGATCTTCAGAAATCGGCAAATAGCTGAAAAACTAGGAATTTTTGAAGAATTATGTAAATGCAAAATGTTCAATCTAGGTATGTTTCACACTCTCCGAAATTTTCAAAGTGATCGAAAACTTGACAGCCGAGCTCTGGACACCTGAAAAAGGCCAAAACCAACTAAAAAAAATACATTTTTAAGATATCTTATTGATCGGTACTGTATACCCGAAAACCTGTAATAGAAGGGCTCCATACCTTTCAACTTTGATCCTATTTCTTAAGAATTCTTTTCAGCATCATTCTGAATACCTCTCACAGTATTCTAATCTCTCCAATTTCGTCATATACGAACCAAATTTTTGGCTCTACTTTGTAATCTGGTTTGGGTTCTTTGGTGGAATATTCACTGGATTTGTTTTCACCTTTACCACGGTGGACATGTTCAAAATGTTGGGAAAATCGAGACGAAAAATATCTGTGACAAATTTCAAAAGACACCGATCTACTGTTAAAAGTCTATTGGCACAGTTTGCAGCTTCTTCTCTTCTATTAGTCCCGTTATTTTGTTTTACTCTGGTTGTGATGGGTGAATTCGAACATTCTCAAATGATGATTAATATTATTTTGGCAGTTTTTTCCTTGAGATCTTCAGTGAATGCATTGGTTCTAATCGTGACGACTCCTTCGTTTAGGAAGTTTATTTTGAGGTGAGTGACTTGGAAAAATAATTGATTAAGTTGCTTTTTGAAGAAGTTCGAAAGCATAATTTAAAAAAAATGTTTTTAGAGACGAAAATTTTTGCATGGTCGCCAAAAAATTTTTAATGTGTTCAAAATAAAAAGGAAATTCAATTTTTTTTA</canonical>
            <polymorphic>CAAACACTTTGAAAATTTTAGAGGTTTTAAAAGAGACCTAGATTGAAAAGTTTGCATTCACAGAAGTTTCTGAAAATTTCTAGTTTTTTCAGATATTTGCCGATTTCTGGAAGACTCTTCGTTTAACCCGTTTTAGTACTGAAAATGTGAAAAGGGGATCTTCAGAAATCGGCAAATAGCTGAAAAACTAGGAATTTTTGAAGAATTATGTAAATGCAAAATGTTCAATCTAGGTATGTTTCACACTCTCCGAAATTTTCAAAGTGATCGAAAACTTGACAGCCGAGCTCTGGACACCTGAAAAAGGCCAAAACCAACTAAAAAAAATACATTTTTAAGATATCTTATTGATCGGTACTGTATACCCGAAAACCTGTAATAGAAGGGCTCCATACCTTTCAACTTTGATCCTATTTCTTAAGAATTCTTTTCAGCATCATTCTGAATACCTCTCACAGTATTCTAATCTCTCCAATTTCGTCATATACGAACCAAATTTYTGGCTCTACTTTGTAATCTGGTTTGGGTTCTTTGGTGGAATATTCACTGGATTTGTTTTCACCTTTACCACGGTGGACATGTTCAAAATGTTGGGAAAATCGAGACGAAAAATATCTGTGACAAATTTCAAAAGACACCGATCTACTGTTAAAAGTCTATTGGCACAGTTTGCAGCTTCTTCTCTTCTATTAGTCCCGTTATTTTGTTTTACTCTGGTTGTGATGGGTGAATTCGAACATTCTCAAATGATGATTAATATTATTTTGGCAGTTTTTTCCTTGAGATCTTCAGTGAATGCATTGGTTCTAATCGTGACGACTCCTTCGTTTAGGAAGTTTATTTTGAGGTGAGTGACTTGGAAAAATAATTGATTAAGTTGCTTTTTGAAGAAGTTCGAAAGCATAATTTAAAAAAAATGTTTTTAGAGACGAAAATTTTTGCATGGTCGCCAAAAAATTTTTAATGTGTTCAAAATAAAAAGGAAATTCAATTTTTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTCTGAATACCTCTCACAGT</pcr_primer_p1>
		<pcr_primer_p2>GAAGAGAAGAAGCTGCAAACT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCATTCTGAATACCTCTCACAGTATTCTAATCTCTCCAATTTCGTCATATACGAACCAAATTTTTGGCTCTACTTTGTAATCTGGTTTGGGTTCTTTGGTGGAATATTCACTGGATTTGTTTTCACCTTTACCACGGTGGACATGTTCAAAATGTTGGGAAAATCGAGACGAAAAATATCTGTGACAAATTTCAAAAGACACCGATCTACTGTTAAAAGTCTATTGGCACAGTTTGCAGCTTCTTCTCTTC</canonical_amplicon>
		<polymorphic_amplicon>TCATTCTGAATACCTCTCACAGTATTCTAATCTCTCCAATTTCGTCATATACGAACCAAATTTYTGGCTCTACTTTGTAATCTGGTTTGGGTTCTTTGGTGGAATATTCACTGGATTTGTTTTCACCTTTACCACGGTGGACATGTTCAAAATGTTGGGAAAATCGAGACGAAAAATATCTGTGACAAATTTCAAAAGACACCGATCTACTGTTAAAAGTCTATTGGCACAGTTTGCAGCTTCTTCTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5584</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>234732</contig_pos>
        <strand>+</strand>
        <context>CAMAATATGT[C/T]MGTAATSGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATAATTGGAAATAATGGGATTGGTTGCATTAGAAAAGTCCAGAATATGT</left_flank>
        <right_flank>TGTAATCGTGCAGAGAATCTGAAATTCGTAAATCAGAAATTCAAAAAACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAGTCCCCGTAACATTTTTCGCATATCAATAGTGGTAAAAGTGAATGTGAAGCCAGAAAAGAACATTCCAAAACTAGAGATAAAGAGCACAATCACAAACCATCCATCGATTTCGTAAATTGAAAAGTTTTGCAAATTTTTGAACTTTTGAAAATATTCTGGATAATTCTTTTCAACGTATTCCATTTGGATGCTTCTACTAATTCCAGTATTGTAGCAAGCCCAAAAAGTTAACGCTGGAGATATAATTGAAAAAATTCCGCCAGAAAAATAAACATAATTTGAGATTATTCTTCCACTTGTAACCAGGCCAATGGTCCGATGTTTTAAAGCAAAACACCATACGAGTGCCGATATTTGGGATACCATAAGACACGTCCATGATACCATAAGATAGTGACAGTAGATATTGCACAGTCTTACTAGGAGGCCATTACAGTAAGCTGCGATAATTGGAAATAATGGGATTGGTTGCATTAGAAAAGTCCAGAATATGTTTGTAATCGTGCAGAGAATCTGAAATTCGTAAATCAGAAATTCAAAAAACCTAAAATTCAAAACAAATTCCAAAAACCTCAAATTGTAAAAAATTCAAATATCAAAATTTCGAAAACTCAAAAAACCTAAAACCTGAAAAATTCTAAAACTATAAATTTCAAGCAATTCAAATAAATTCAAAAATTCGAAAATTCAGAAAATGGGAAATTCCGAATTTCCAAATTTCCGAAATTTCAGAATTTCAGAATTTCGTAATCTTAGAAACTCAGAATCTCAGAATTTTAGAACTTCAGAATTTCAAAAGTCCAGAATTTCGGAATTTCAGAATTTCAGAATTTCGTAATCTTAGAAACTCAGAATCTCAGAATTTTAGAACTTCAGAATTTCAAAAGTCCAGAATTTCGGAATTTCAGAATTTCAGAATTTCGTAATCTTAGAAACCCAGAATCTCAGAATTTCAGAACTTCAGAATTTCAAAAGTCCGGAATTTCGGAATTTCA</canonical>
            <polymorphic>TTCAGTCCCCGTAACATTTTTCGCATATCAATAGTGGTAAAAGTGAATGTGAAGCCAGAAAAGAACATTCCAAAACTAGAGATAAAGAGCACAATCACAAACCATCCATCGATTTCGTAAATTGAAAAGTTTTGCAAATTTTTGAACTTTTGAAAATATTCTGGATAATTCTTTTCAACGTATTCCATTTGGATGCTTCTACTAATTCCAGTATTGTAGCAAGCCCAAAAAGTTAACGCTGGAGATATAATTGAAAAAATTCCGCCAGAAAAATAAACATAATTTGAGATTATTCTTCCACTTGTAACCAGGCCAATGGTCCGATGTTTTAAAGCAAAACACCATACGAGTGCCGATATTTGGGATACCATAAGACACGTCCATGATACCATAAGATAGTGACAGTAGATATTGCACAGTCTTACTAGGAGGCCATTACAGTAAGCTGCGATAATTGGAAATAATGGGATTGGTTGCATTAGAAAAGTCCAGAATATGTYTGTAATCGTGCAGAGAATCTGAAATTCGTAAATCAGAAATTCAAAAAACCTAAAATTCAAAACAAATTCCAAAAACCTCAAATTGTAAAAAATTCAAATATCAAAATTTCGAAAACTCAAAAAACCTAAAACCTGAAAAATTCTAAAACTATAAATTTCAAGCAATTCAAATAAATTCAAAAATTCGAAAATTCAGAAAATGGGAAATTCCGAATTTCCAAATTTCCGAAATTTCAGAATTTCAGAATTTCGTAATCTTAGAAACTCAGAATCTCAGAATTTTAGAACTTCAGAATTTCAAAAGTCCAGAATTTCGGAATTTCAGAATTTCAGAATTTCGTAATCTTAGAAACTCAGAATCTCAGAATTTTAGAACTTCAGAATTTCAAAAGTCCAGAATTTCGGAATTTCAGAATTTCAGAATTTCGTAATCTTAGAAACCCAGAATCTCAGAATTTCAGAACTTCAGAATTTCAAAAGTCCGGAATTTCGGAATTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTTTTAAAGCAAAACACCATA</pcr_primer_p1>
		<pcr_primer_p2>GGAATTTGTTTTGAATTTTAGGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATGTTTTAAAGCAAAACACCATACGAGTGCCGATATTTGGGATACCATAAGACACGTCCATGATACCATAAGATAGTGACAGTAGATATTGCACAGTCTTACTAGGAGGCCATTACAGTAAGCTGCGATAATTGGAAATAATGGGATTGGTTGCATTAGAAAAGTCCAGAATATGTTTGTAATCGTGCAGAGAATCTGAAATTCGTAAATCAGAAATTCAAAAAACCTAAAATTCAAAACAAATTCC</canonical_amplicon>
		<polymorphic_amplicon>ATGTTTTAAAGCAAAACACCATACGAGTGCCGATATTTGGGATACCATAAGACACGTCCATGATACCATAAGATAGTGACAGTAGATATTGCACAGTCTTACTAGGAGGCCATTACAGTAAGCTGCGATAATTGGAAATAATGGGATTGGTTGCATTAGAAAAGTCCAGAATATGTYTGTAATCGTGCAGAGAATCTGAAATTCGTAAATCAGAAATTCAAAAAACCTAAAATTCAAAACAAATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5585</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>341652</contig_pos>
        <strand>+</strand>
        <context>GGCTGAAAAA[A/G]CTGAAATTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACATTCGCAAATACCAAACATATAATTTTCTGTCTGAACGGCTGAAAAA</left_flank>
        <right_flank>CTGAAATTTGGAGCAATTTCGTTTCAAAAAGTTTGTCACATTCATCAAAA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTGAGATTCTAGGATTCTGACATTTAGAAATTTAGAAATTCAGAGACTCAGTAATTCAGAAATTCAGTGATTCTAAATGAAAGATTCTGAGATTCTAAGATCCTAAGATTTTAATATTCTGAGATTCTGAGATTTTGAAAATCTAAACACTCAGAAATACTAGAATTCCGAAATCGCCAAAAATTAGAAGTATCTGGAAATCCAAAGTTTCGACATCTTTTTGGCGCTGGAATGACGGACCAAAGTGGTTTTTTCTGTATGCCTTTTTCAATAAAATTTAGCGGTCAATTTTATAAAAAAAACAGACGAAACTTCGGTCAAAAAAAGCTAGCAAAGATTAAGAACGTTTTTCACAAAACAACATCTGAAAAATTACTGAAACTTCAGAATCCTTTCAAGCGACAATTTGAGTTGATTCGTTTCAAAAGTTCAAACTTATTTTCTACAACATTCGCAAATACCAAACATATAATTTTCTGTCTGAACGGCTGAAAAAGCTGAAATTTGGAGCAATTTCGTTTCAAAAAGTTTGTCACATTCATCAAAAAAAATTCCACAAAAACGAAATCAAAAAGAACAATAAAACATCATCACAACCTCACGCTCCCTAAATCTCTTCCTATCCAATTATCTTTTTTTCAATTTCAAATAAATTTCACTCCATTATGACACATAACCTGTTTGACCTATTCAAACAGGAAAACCTCCGATTTCGAAAAAAAAATTCAAAAAAAATTGTCGAGTTTTTGAATTCCAGATTTCCGAATTGTGGATTTTTGAACTTTTTTACGAATTTAAAAAATGGATTTTAGAAAAAGGGGAGAAAAAGAGGCTGAATGAGACACGAAAAATATTTTTAATCAAAGAAAGTAGTGTCCTAGTTTTGAATATTTTATGAGCCATCTGTCTCCATTAGAACATGTCCTTCAGAATTCAAAATTCAGGGAAAAAATCAAAAAAAAAAAATTGAAAAGATGCAAAACAGTAAACGTAGTTT</canonical>
            <polymorphic>ATTTTGAGATTCTAGGATTCTGACATTTAGAAATTTAGAAATTCAGAGACTCAGTAATTCAGAAATTCAGTGATTCTAAATGAAAGATTCTGAGATTCTAAGATCCTAAGATTTTAATATTCTGAGATTCTGAGATTTTGAAAATCTAAACACTCAGAAATACTAGAATTCCGAAATCGCCAAAAATTAGAAGTATCTGGAAATCCAAAGTTTCGACATCTTTTTGGCGCTGGAATGACGGACCAAAGTGGTTTTTTCTGTATGCCTTTTTCAATAAAATTTAGCGGTCAATTTTATAAAAAAAACAGACGAAACTTCGGTCAAAAAAAGCTAGCAAAGATTAAGAACGTTTTTCACAAAACAACATCTGAAAAATTACTGAAACTTCAGAATCCTTTCAAGCGACAATTTGAGTTGATTCGTTTCAAAAGTTCAAACTTATTTTCTACAACATTCGCAAATACCAAACATATAATTTTCTGTCTGAACGGCTGAAAAARCTGAAATTTGGAGCAATTTCGTTTCAAAAAGTTTGTCACATTCATCAAAAAAAATTCCACAAAAACGAAATCAAAAAGAACAATAAAACATCATCACAACCTCACGCTCCCTAAATCTCTTCCTATCCAATTATCTTTTTTTCAATTTCAAATAAATTTCACTCCATTATGACACATAACCTGTTTGACCTATTCAAACAGGAAAACCTCCGATTTCGAAAAAAAAATTCAAAAAAAATTGTCGAGTTTTTGAATTCCAGATTTCCGAATTGTGGATTTTTGAACTTTTTTACGAATTTAAAAAATGGATTTTAGAAAAAGGGGAGAAAAAGAGGCTGAATGAGACACGAAAAATATTTTTAATCAAAGAAAGTAGTGTCCTAGTTTTGAATATTTTATGAGCCATCTGTCTCCATTAGAACATGTCCTTCAGAATTCAAAATTCAGGGAAAAAATCAAAAAAAAAAAATTGAAAAGATGCAAAACAGTAAACGTAGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>500 330 170</canonical_bands>
                <polymorphic_bands>670 330</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>335 330 161 98 67 9</canonical_bands>
                <polymorphic_bands>344 330 161 98 67</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGATTAAGAACGTTTTTCACAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTCTTTTTGATTTCGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGATTAAGAACGTTTTTCACAAAACAACATCTGAAAAATTACTGAAACTTCAGAATCCTTTCAAGCGACAATTTGAGTTGATTCGTTTCAAAAGTTCAAACTTATTTTCTACAACATTCGCAAATACCAAACATATAATTTTCTGTCTGAACGGCTGAAAAAGCTGAAATTTGGAGCAATTTCGTTTCAAAAAGTTTGTCACATTCATCAAAAAAAATTCCACAAAAACGAAATCAAAAAGAACAAT</canonical_amplicon>
		<polymorphic_amplicon>AAGATTAAGAACGTTTTTCACAAAACAACATCTGAAAAATTACTGAAACTTCAGAATCCTTTCAAGCGACAATTTGAGTTGATTCGTTTCAAAAGTTCAAACTTATTTTCTACAACATTCGCAAATACCAAACATATAATTTTCTGTCTGAACGGCTGAAAAARCTGAAATTTGGAGCAATTTCGTTTCAAAAAGTTTGTCACATTCATCAAAAAAAATTCCACAAAAACGAAATCAAAAAGAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5586</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>341739</contig_pos>
        <strand>+</strand>
        <context>AGAACAATAA[A/T]ACATCATCAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CACATTCATCAAAAAAAATTCCACAAAAACGAAATCAAAAAGAACAATAA</left_flank>
        <right_flank>ACATCATCACAACCTCACGCTCCCTAAATCTCTTCCTATCCAATTATCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGAGATTCTAAGATCCTAAGATTTTAATATTCTGAGATTCTGAGATTTTGAAAATCTAAACACTCAGAAATACTAGAATTCCGAAATCGCCAAAAATTAGAAGTATCTGGAAATCCAAAGTTTCGACATCTTTTTGGCGCTGGAATGACGGACCAAAGTGGTTTTTTCTGTATGCCTTTTTCAATAAAATTTAGCGGTCAATTTTATAAAAAAAACAGACGAAACTTCGGTCAAAAAAAGCTAGCAAAGATTAAGAACGTTTTTCACAAAACAACATCTGAAAAATTACTGAAACTTCAGAATCCTTTCAAGCGACAATTTGAGTTGATTCGTTTCAAAAGTTCAAACTTATTTTCTACAACATTCGCAAATACCAAACATATAATTTTCTGTCTGAACGGCTGAAAAAGCTGAAATTTGGAGCAATTTCGTTTCAAAAAGTTTGTCACATTCATCAAAAAAAATTCCACAAAAACGAAATCAAAAAGAACAATAAAACATCATCACAACCTCACGCTCCCTAAATCTCTTCCTATCCAATTATCTTTTTTTCAATTTCAAATAAATTTCACTCCATTATGACACATAACCTGTTTGACCTATTCAAACAGGAAAACCTCCGATTTCGAAAAAAAAATTCAAAAAAAATTGTCGAGTTTTTGAATTCCAGATTTCCGAATTGTGGATTTTTGAACTTTTTTACGAATTTAAAAAATGGATTTTAGAAAAAGGGGAGAAAAAGAGGCTGAATGAGACACGAAAAATATTTTTAATCAAAGAAAGTAGTGTCCTAGTTTTGAATATTTTATGAGCCATCTGTCTCCATTAGAACATGTCCTTCAGAATTCAAAATTCAGGGAAAAAATCAAAAAAAAAAAATTGAAAAGATGCAAAACAGTAAACGTAGTTTTTCCTTGTGTCTAAAAATTTTTCTCGCAATCAGAAGACTAGAAAAAAGAAAAAGAAAAAGAGAGAATTTTCAATTTTGTGCAAATCA</canonical>
            <polymorphic>TTCTGAGATTCTAAGATCCTAAGATTTTAATATTCTGAGATTCTGAGATTTTGAAAATCTAAACACTCAGAAATACTAGAATTCCGAAATCGCCAAAAATTAGAAGTATCTGGAAATCCAAAGTTTCGACATCTTTTTGGCGCTGGAATGACGGACCAAAGTGGTTTTTTCTGTATGCCTTTTTCAATAAAATTTAGCGGTCAATTTTATAAAAAAAACAGACGAAACTTCGGTCAAAAAAAGCTAGCAAAGATTAAGAACGTTTTTCACAAAACAACATCTGAAAAATTACTGAAACTTCAGAATCCTTTCAAGCGACAATTTGAGTTGATTCGTTTCAAAAGTTCAAACTTATTTTCTACAACATTCGCAAATACCAAACATATAATTTTCTGTCTGAACGGCTGAAAAAGCTGAAATTTGGAGCAATTTCGTTTCAAAAAGTTTGTCACATTCATCAAAAAAAATTCCACAAAAACGAAATCAAAAAGAACAATAAWACATCATCACAACCTCACGCTCCCTAAATCTCTTCCTATCCAATTATCTTTTTTTCAATTTCAAATAAATTTCACTCCATTATGACACATAACCTGTTTGACCTATTCAAACAGGAAAACCTCCGATTTCGAAAAAAAAATTCAAAAAAAATTGTCGAGTTTTTGAATTCCAGATTTCCGAATTGTGGATTTTTGAACTTTTTTACGAATTTAAAAAATGGATTTTAGAAAAAGGGGAGAAAAAGAGGCTGAATGAGACACGAAAAATATTTTTAATCAAAGAAAGTAGTGTCCTAGTTTTGAATATTTTATGAGCCATCTGTCTCCATTAGAACATGTCCTTCAGAATTCAAAATTCAGGGAAAAAATCAAAAAAAAAAAATTGAAAAGATGCAAAACAGTAAACGTAGTTTTTCCTTGTGTCTAAAAATTTTTCTCGCAATCAGAAGACTAGAAAAAAGAAAAAGAAAAAGAGAGAATTTTCAATTTTGTGCAAATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCGCAAATACCAAACATATAA</pcr_primer_p1>
		<pcr_primer_p2>GTTTGAATAGGTCAAACAGGTTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTCGCAAATACCAAACATATAATTTTCTGTCTGAACGGCTGAAAAAGCTGAAATTTGGAGCAATTTCGTTTCAAAAAGTTTGTCACATTCATCAAAAAAAATTCCACAAAAACGAAATCAAAAAGAACAATAAAACATCATCACAACCTCACGCTCCCTAAATCTCTTCCTATCCAATTATCTTTTTTTCAATTTCAAATAAATTTCACTCCATTATGACACATAACCTGTTTGACCTATTCAAAC</canonical_amplicon>
		<polymorphic_amplicon>ATTCGCAAATACCAAACATATAATTTTCTGTCTGAACGGCTGAAAAAGCTGAAATTTGGAGCAATTTCGTTTCAAAAAGTTTGTCACATTCATCAAAAAAAATTCCACAAAAACGAAATCAAAAAGAACAATAAWACATCATCACAACCTCACGCTCCCTAAATCTCTTCCTATCCAATTATCTTTTTTTCAATTTCAAATAAATTTCACTCCATTATGACACATAACCTGTTTGACCTATTCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5665</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>341966</contig_pos>
        <strand>+</strand>
        <context>AATGGATTTT[A/T]GAAAAAGGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCGAATTGTGGATTTTTGAACTTTTTTACGAATTTAAAAAATGGATTTT</left_flank>
        <right_flank>GAAAAAGGGGAGAAAAAGAGGCTGAATGAGACACGAAAAATATTTTTAAT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCGGTCAAAAAAAGCTAGCAAAGATTAAGAACGTTTTTCACAAAACAACATCTGAAAAATTACTGAAACTTCAGAATCCTTTCAAGCGACAATTTGAGTTGATTCGTTTCAAAAGTTCAAACTTATTTTCTACAACATTCGCAAATACCAAACATATAATTTTCTGTCTGAACGGCTGAAAAAGCTGAAATTTGGAGCAATTTCGTTTCAAAAAGTTTGTCACATTCATCAAAAAAAATTCCACAAAAACGAAATCAAAAAGAACAATAAAACATCATCACAACCTCACGCTCCCTAAATCTCTTCCTATCCAATTATCTTTTTTTCAATTTCAAATAAATTTCACTCCATTATGACACATAACCTGTTTGACCTATTCAAACAGGAAAACCTCCGATTTCGAAAAAAAAATTCAAAAAAAATTGTCGAGTTTTTGAATTCCAGATTTCCGAATTGTGGATTTTTGAACTTTTTTACGAATTTAAAAAATGGATTTTAGAAAAAGGGGAGAAAAAGAGGCTGAATGAGACACGAAAAATATTTTTAATCAAAGAAAGTAGTGTCCTAGTTTTGAATATTTTATGAGCCATCTGTCTCCATTAGAACATGTCCTTCAGAATTCAAAATTCAGGGAAAAAATCAAAAAAAAAAAATTGAAAAGATGCAAAACAGTAAACGTAGTTTTTCCTTGTGTCTAAAAATTTTTCTCGCAATCAGAAGACTAGAAAAAAGAAAAAGAAAAAGAGAGAATTTTCAATTTTGTGCAAATCAAATCGGAACTTTTTTCTTTGTCTTTTGTCTTCTCTTTTTTTTCGTTTCGTTGAAATTTTTATCGAATTTTAGGGAGAAAGGGTTACTAGCTTTTTTGTTTTTTTTTGTGTTGCGATCTGAGAATTTCCGAATTTCAGAATTTTCATGATTTTTGTAGTTTCAGACTTTTAGAACTTCAGGATTTCAGAATCTCAGAATCCTCAGAATCTCAGAATCCTCAGAATCTC</canonical>
            <polymorphic>CTTCGGTCAAAAAAAGCTAGCAAAGATTAAGAACGTTTTTCACAAAACAACATCTGAAAAATTACTGAAACTTCAGAATCCTTTCAAGCGACAATTTGAGTTGATTCGTTTCAAAAGTTCAAACTTATTTTCTACAACATTCGCAAATACCAAACATATAATTTTCTGTCTGAACGGCTGAAAAAGCTGAAATTTGGAGCAATTTCGTTTCAAAAAGTTTGTCACATTCATCAAAAAAAATTCCACAAAAACGAAATCAAAAAGAACAATAAAACATCATCACAACCTCACGCTCCCTAAATCTCTTCCTATCCAATTATCTTTTTTTCAATTTCAAATAAATTTCACTCCATTATGACACATAACCTGTTTGACCTATTCAAACAGGAAAACCTCCGATTTCGAAAAAAAAATTCAAAAAAAATTGTCGAGTTTTTGAATTCCAGATTTCCGAATTGTGGATTTTTGAACTTTTTTACGAATTTAAAAAATGGATTTTWGAAAAAGGGGAGAAAAAGAGGCTGAATGAGACACGAAAAATATTTTTAATCAAAGAAAGTAGTGTCCTAGTTTTGAATATTTTATGAGCCATCTGTCTCCATTAGAACATGTCCTTCAGAATTCAAAATTCAGGGAAAAAATCAAAAAAAAAAAATTGAAAAGATGCAAAACAGTAAACGTAGTTTTTCCTTGTGTCTAAAAATTTTTCTCGCAATCAGAAGACTAGAAAAAAGAAAAAGAAAAAGAGAGAATTTTCAATTTTGTGCAAATCAAATCGGAACTTTTTTCTTTGTCTTTTGTCTTCTCTTTTTTTTCGTTTCGTTGAAATTTTTATCGAATTTTAGGGAGAAAGGGTTACTAGCTTTTTTGTTTTTTTTTGTGTTGCGATCTGAGAATTTCCGAATTTCAGAATTTTCATGATTTTTGTAGTTTCAGACTTTTAGAACTTCAGGATTTCAGAATCTCAGAATCCTCAGAATCTCAGAATCCTCAGAATCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCCATTATGACACATAACCTG</pcr_primer_p1>
		<pcr_primer_p2>ACAGATGGCTCATAAAATATTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTCCATTATGACACATAACCTGTTTGACCTATTCAAACAGGAAAACCTCCGATTTCGAAAAAAAAATTCAAAAAAAATTGTCGAGTTTTTGAATTCCAGATTTCCGAATTGTGGATTTTTGAACTTTTTTACGAATTTAAAAAATGGATTTTAGAAAAAGGGGAGAAAAAGAGGCTGAATGAGACACGAAAAATATTTTTAATCAAAGAAAGTAGTGTCCTAGTTTTGAATATTTTATGAGCCATCTGT</canonical_amplicon>
		<polymorphic_amplicon>ACTCCATTATGACACATAACCTGTTTGACCTATTCAAACAGGAAAACCTCCGATTTCGAAAAAAAAATTCAAAAAAAATTGTCGAGTTTTTGAATTCCAGATTTCCGAATTGTGGATTTTTGAACTTTTTTACGAATTTAAAAAATGGATTTTWGAAAAAGGGGAGAAAAAGAGGCTGAATGAGACACGAAAAATATTTTTAATCAAAGAAAGTAGTGTCCTAGTTTTGAATATTTTATGAGCCATCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5666</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>341989</contig_pos>
        <strand>+</strand>
        <context>AAAAAGAGGC[G/T]GAATGAGACA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTTACGAATTTAAAAAATGGATTTTAGAAAAAGGGGAGAAAAAGAGGC</left_flank>
        <right_flank>GAATGAGACACGAAAAATATTTTTAATCAAAGAAAGTAGTGTCCTAGTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATTAAGAACGTTTTTCACAAAACAACATCTGAAAAATTACTGAAACTTCAGAATCCTTTCAAGCGACAATTTGAGTTGATTCGTTTCAAAAGTTCAAACTTATTTTCTACAACATTCGCAAATACCAAACATATAATTTTCTGTCTGAACGGCTGAAAAAGCTGAAATTTGGAGCAATTTCGTTTCAAAAAGTTTGTCACATTCATCAAAAAAAATTCCACAAAAACGAAATCAAAAAGAACAATAAAACATCATCACAACCTCACGCTCCCTAAATCTCTTCCTATCCAATTATCTTTTTTTCAATTTCAAATAAATTTCACTCCATTATGACACATAACCTGTTTGACCTATTCAAACAGGAAAACCTCCGATTTCGAAAAAAAAATTCAAAAAAAATTGTCGAGTTTTTGAATTCCAGATTTCCGAATTGTGGATTTTTGAACTTTTTTACGAATTTAAAAAATGGATTTTAGAAAAAGGGGAGAAAAAGAGGCTGAATGAGACACGAAAAATATTTTTAATCAAAGAAAGTAGTGTCCTAGTTTTGAATATTTTATGAGCCATCTGTCTCCATTAGAACATGTCCTTCAGAATTCAAAATTCAGGGAAAAAATCAAAAAAAAAAAATTGAAAAGATGCAAAACAGTAAACGTAGTTTTTCCTTGTGTCTAAAAATTTTTCTCGCAATCAGAAGACTAGAAAAAAGAAAAAGAAAAAGAGAGAATTTTCAATTTTGTGCAAATCAAATCGGAACTTTTTTCTTTGTCTTTTGTCTTCTCTTTTTTTTCGTTTCGTTGAAATTTTTATCGAATTTTAGGGAGAAAGGGTTACTAGCTTTTTTGTTTTTTTTTGTGTTGCGATCTGAGAATTTCCGAATTTCAGAATTTTCATGATTTTTGTAGTTTCAGACTTTTAGAACTTCAGGATTTCAGAATCTCAGAATCCTCAGAATCTCAGAATCCTCAGAATCTCAGAATATCAGAATATCAGAATCT</canonical>
            <polymorphic>AGATTAAGAACGTTTTTCACAAAACAACATCTGAAAAATTACTGAAACTTCAGAATCCTTTCAAGCGACAATTTGAGTTGATTCGTTTCAAAAGTTCAAACTTATTTTCTACAACATTCGCAAATACCAAACATATAATTTTCTGTCTGAACGGCTGAAAAAGCTGAAATTTGGAGCAATTTCGTTTCAAAAAGTTTGTCACATTCATCAAAAAAAATTCCACAAAAACGAAATCAAAAAGAACAATAAAACATCATCACAACCTCACGCTCCCTAAATCTCTTCCTATCCAATTATCTTTTTTTCAATTTCAAATAAATTTCACTCCATTATGACACATAACCTGTTTGACCTATTCAAACAGGAAAACCTCCGATTTCGAAAAAAAAATTCAAAAAAAATTGTCGAGTTTTTGAATTCCAGATTTCCGAATTGTGGATTTTTGAACTTTTTTACGAATTTAAAAAATGGATTTTAGAAAAAGGGGAGAAAAAGAGGCKGAATGAGACACGAAAAATATTTTTAATCAAAGAAAGTAGTGTCCTAGTTTTGAATATTTTATGAGCCATCTGTCTCCATTAGAACATGTCCTTCAGAATTCAAAATTCAGGGAAAAAATCAAAAAAAAAAAATTGAAAAGATGCAAAACAGTAAACGTAGTTTTTCCTTGTGTCTAAAAATTTTTCTCGCAATCAGAAGACTAGAAAAAAGAAAAAGAAAAAGAGAGAATTTTCAATTTTGTGCAAATCAAATCGGAACTTTTTTCTTTGTCTTTTGTCTTCTCTTTTTTTTCGTTTCGTTGAAATTTTTATCGAATTTTAGGGAGAAAGGGTTACTAGCTTTTTTGTTTTTTTTTGTGTTGCGATCTGAGAATTTCCGAATTTCAGAATTTTCATGATTTTTGTAGTTTCAGACTTTTAGAACTTCAGGATTTCAGAATCTCAGAATCCTCAGAATCTCAGAATCCTCAGAATCTCAGAATATCAGAATATCAGAATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>335 274 161 154 67 9</canonical_bands>
                <polymorphic_bands>402 274 161 154 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCCATTATGACACATAACCTG</pcr_primer_p1>
		<pcr_primer_p2>ACAGATGGCTCATAAAATATTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTCCATTATGACACATAACCTGTTTGACCTATTCAAACAGGAAAACCTCCGATTTCGAAAAAAAAATTCAAAAAAAATTGTCGAGTTTTTGAATTCCAGATTTCCGAATTGTGGATTTTTGAACTTTTTTACGAATTTAAAAAATGGATTTTAGAAAAAGGGGAGAAAAAGAGGCTGAATGAGACACGAAAAATATTTTTAATCAAAGAAAGTAGTGTCCTAGTTTTGAATATTTTATGAGCCATCTGT</canonical_amplicon>
		<polymorphic_amplicon>ACTCCATTATGACACATAACCTGTTTGACCTATTCAAACAGGAAAACCTCCGATTTCGAAAAAAAAATTCAAAAAAAATTGTCGAGTTTTTGAATTCCAGATTTCCGAATTGTGGATTTTTGAACTTTTTTACGAATTTAAAAAATGGATTTTAGAAAAAGGGGAGAAAAAGAGGCKGAATGAGACACGAAAAATATTTTTAATCAAAGAAAGTAGTGTCCTAGTTTTGAATATTTTATGAGCCATCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5667</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>342001</contig_pos>
        <strand>+</strand>
        <context>AATGAGACAC[G/T]AAAAATATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAAAAAATGGATTTTAGAAAAAGGGGAGAAAAAGAGGCTGAATGAGACAC</left_flank>
        <right_flank>AAAAATATTTTTAATCAAAGAAAGTAGTGTCCTAGTTTTGAATATTTTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCACAAAACAACATCTGAAAAATTACTGAAACTTCAGAATCCTTTCAAGCGACAATTTGAGTTGATTCGTTTCAAAAGTTCAAACTTATTTTCTACAACATTCGCAAATACCAAACATATAATTTTCTGTCTGAACGGCTGAAAAAGCTGAAATTTGGAGCAATTTCGTTTCAAAAAGTTTGTCACATTCATCAAAAAAAATTCCACAAAAACGAAATCAAAAAGAACAATAAAACATCATCACAACCTCACGCTCCCTAAATCTCTTCCTATCCAATTATCTTTTTTTCAATTTCAAATAAATTTCACTCCATTATGACACATAACCTGTTTGACCTATTCAAACAGGAAAACCTCCGATTTCGAAAAAAAAATTCAAAAAAAATTGTCGAGTTTTTGAATTCCAGATTTCCGAATTGTGGATTTTTGAACTTTTTTACGAATTTAAAAAATGGATTTTAGAAAAAGGGGAGAAAAAGAGGCTGAATGAGACACGAAAAATATTTTTAATCAAAGAAAGTAGTGTCCTAGTTTTGAATATTTTATGAGCCATCTGTCTCCATTAGAACATGTCCTTCAGAATTCAAAATTCAGGGAAAAAATCAAAAAAAAAAAATTGAAAAGATGCAAAACAGTAAACGTAGTTTTTCCTTGTGTCTAAAAATTTTTCTCGCAATCAGAAGACTAGAAAAAAGAAAAAGAAAAAGAGAGAATTTTCAATTTTGTGCAAATCAAATCGGAACTTTTTTCTTTGTCTTTTGTCTTCTCTTTTTTTTCGTTTCGTTGAAATTTTTATCGAATTTTAGGGAGAAAGGGTTACTAGCTTTTTTGTTTTTTTTTGTGTTGCGATCTGAGAATTTCCGAATTTCAGAATTTTCATGATTTTTGTAGTTTCAGACTTTTAGAACTTCAGGATTTCAGAATCTCAGAATCCTCAGAATCTCAGAATCCTCAGAATCTCAGAATATCAGAATATCAGAATCTCAGAATCTAAGC</canonical>
            <polymorphic>TTTTTCACAAAACAACATCTGAAAAATTACTGAAACTTCAGAATCCTTTCAAGCGACAATTTGAGTTGATTCGTTTCAAAAGTTCAAACTTATTTTCTACAACATTCGCAAATACCAAACATATAATTTTCTGTCTGAACGGCTGAAAAAGCTGAAATTTGGAGCAATTTCGTTTCAAAAAGTTTGTCACATTCATCAAAAAAAATTCCACAAAAACGAAATCAAAAAGAACAATAAAACATCATCACAACCTCACGCTCCCTAAATCTCTTCCTATCCAATTATCTTTTTTTCAATTTCAAATAAATTTCACTCCATTATGACACATAACCTGTTTGACCTATTCAAACAGGAAAACCTCCGATTTCGAAAAAAAAATTCAAAAAAAATTGTCGAGTTTTTGAATTCCAGATTTCCGAATTGTGGATTTTTGAACTTTTTTACGAATTTAAAAAATGGATTTTAGAAAAAGGGGAGAAAAAGAGGCTGAATGAGACACKAAAAATATTTTTAATCAAAGAAAGTAGTGTCCTAGTTTTGAATATTTTATGAGCCATCTGTCTCCATTAGAACATGTCCTTCAGAATTCAAAATTCAGGGAAAAAATCAAAAAAAAAAAATTGAAAAGATGCAAAACAGTAAACGTAGTTTTTCCTTGTGTCTAAAAATTTTTCTCGCAATCAGAAGACTAGAAAAAAGAAAAAGAAAAAGAGAGAATTTTCAATTTTGTGCAAATCAAATCGGAACTTTTTTCTTTGTCTTTTGTCTTCTCTTTTTTTTCGTTTCGTTGAAATTTTTATCGAATTTTAGGGAGAAAGGGTTACTAGCTTTTTTGTTTTTTTTTGTGTTGCGATCTGAGAATTTCCGAATTTCAGAATTTTCATGATTTTTGTAGTTTCAGACTTTTAGAACTTCAGGATTTCAGAATCTCAGAATCCTCAGAATCTCAGAATCCTCAGAATCTCAGAATATCAGAATATCAGAATCTCAGAATCTAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCCATTATGACACATAACCTG</pcr_primer_p1>
		<pcr_primer_p2>ACAGATGGCTCATAAAATATTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTCCATTATGACACATAACCTGTTTGACCTATTCAAACAGGAAAACCTCCGATTTCGAAAAAAAAATTCAAAAAAAATTGTCGAGTTTTTGAATTCCAGATTTCCGAATTGTGGATTTTTGAACTTTTTTACGAATTTAAAAAATGGATTTTAGAAAAAGGGGAGAAAAAGAGGCTGAATGAGACACGAAAAATATTTTTAATCAAAGAAAGTAGTGTCCTAGTTTTGAATATTTTATGAGCCATCTGT</canonical_amplicon>
		<polymorphic_amplicon>ACTCCATTATGACACATAACCTGTTTGACCTATTCAAACAGGAAAACCTCCGATTTCGAAAAAAAAATTCAAAAAAAATTGTCGAGTTTTTGAATTCCAGATTTCCGAATTGTGGATTTTTGAACTTTTTTACGAATTTAAAAAATGGATTTTAGAAAAAGGGGAGAAAAAGAGGCTGAATGAGACACKAAAAATATTTTTAATCAAAGAAAGTAGTGTCCTAGTTTTGAATATTTTATGAGCCATCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5668</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>342036</contig_pos>
        <strand>+</strand>
        <context>TAGTGTCCTA[G/T]TTTTGAATAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGCTGAATGAGACACGAAAAATATTTTTAATCAAAGAAAGTAGTGTCCTA</left_flank>
        <right_flank>TTTTGAATATTTTATGAGCCATCTGTCTCCATTAGAACATGTCCTTCAGA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCAGAATCCTTTCAAGCGACAATTTGAGTTGATTCGTTTCAAAAGTTCAAACTTATTTTCTACAACATTCGCAAATACCAAACATATAATTTTCTGTCTGAACGGCTGAAAAAGCTGAAATTTGGAGCAATTTCGTTTCAAAAAGTTTGTCACATTCATCAAAAAAAATTCCACAAAAACGAAATCAAAAAGAACAATAAAACATCATCACAACCTCACGCTCCCTAAATCTCTTCCTATCCAATTATCTTTTTTTCAATTTCAAATAAATTTCACTCCATTATGACACATAACCTGTTTGACCTATTCAAACAGGAAAACCTCCGATTTCGAAAAAAAAATTCAAAAAAAATTGTCGAGTTTTTGAATTCCAGATTTCCGAATTGTGGATTTTTGAACTTTTTTACGAATTTAAAAAATGGATTTTAGAAAAAGGGGAGAAAAAGAGGCTGAATGAGACACGAAAAATATTTTTAATCAAAGAAAGTAGTGTCCTAGTTTTGAATATTTTATGAGCCATCTGTCTCCATTAGAACATGTCCTTCAGAATTCAAAATTCAGGGAAAAAATCAAAAAAAAAAAATTGAAAAGATGCAAAACAGTAAACGTAGTTTTTCCTTGTGTCTAAAAATTTTTCTCGCAATCAGAAGACTAGAAAAAAGAAAAAGAAAAAGAGAGAATTTTCAATTTTGTGCAAATCAAATCGGAACTTTTTTCTTTGTCTTTTGTCTTCTCTTTTTTTTCGTTTCGTTGAAATTTTTATCGAATTTTAGGGAGAAAGGGTTACTAGCTTTTTTGTTTTTTTTTGTGTTGCGATCTGAGAATTTCCGAATTTCAGAATTTTCATGATTTTTGTAGTTTCAGACTTTTAGAACTTCAGGATTTCAGAATCTCAGAATCCTCAGAATCTCAGAATCCTCAGAATCTCAGAATATCAGAATATCAGAATCTCAGAATCTAAGCATCTCAGAATCTCAGAATCTCAGAATCTCAGAATT</canonical>
            <polymorphic>CTTCAGAATCCTTTCAAGCGACAATTTGAGTTGATTCGTTTCAAAAGTTCAAACTTATTTTCTACAACATTCGCAAATACCAAACATATAATTTTCTGTCTGAACGGCTGAAAAAGCTGAAATTTGGAGCAATTTCGTTTCAAAAAGTTTGTCACATTCATCAAAAAAAATTCCACAAAAACGAAATCAAAAAGAACAATAAAACATCATCACAACCTCACGCTCCCTAAATCTCTTCCTATCCAATTATCTTTTTTTCAATTTCAAATAAATTTCACTCCATTATGACACATAACCTGTTTGACCTATTCAAACAGGAAAACCTCCGATTTCGAAAAAAAAATTCAAAAAAAATTGTCGAGTTTTTGAATTCCAGATTTCCGAATTGTGGATTTTTGAACTTTTTTACGAATTTAAAAAATGGATTTTAGAAAAAGGGGAGAAAAAGAGGCTGAATGAGACACGAAAAATATTTTTAATCAAAGAAAGTAGTGTCCTAKTTTTGAATATTTTATGAGCCATCTGTCTCCATTAGAACATGTCCTTCAGAATTCAAAATTCAGGGAAAAAATCAAAAAAAAAAAATTGAAAAGATGCAAAACAGTAAACGTAGTTTTTCCTTGTGTCTAAAAATTTTTCTCGCAATCAGAAGACTAGAAAAAAGAAAAAGAAAAAGAGAGAATTTTCAATTTTGTGCAAATCAAATCGGAACTTTTTTCTTTGTCTTTTGTCTTCTCTTTTTTTTCGTTTCGTTGAAATTTTTATCGAATTTTAGGGAGAAAGGGTTACTAGCTTTTTTGTTTTTTTTTGTGTTGCGATCTGAGAATTTCCGAATTTCAGAATTTTCATGATTTTTGTAGTTTCAGACTTTTAGAACTTCAGGATTTCAGAATCTCAGAATCCTCAGAATCTCAGAATCCTCAGAATCTCAGAATATCAGAATATCAGAATCTCAGAATCTAAGCATCTCAGAATCTCAGAATCTCAGAATCTCAGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>497 211 157 135</canonical_bands>
                <polymorphic_bands>654 211 135</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGACCTATTCAAACAGGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>AATTTTGAATTCTGAAGGACAT</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>TGACCTATTCAAACAGGAAAACCTCCGATTTCGAAAAAAAAATTCAAAAAAAATTGTCGAGTTTTTGAATTCCAGATTTCCGAATTGTGGATTTTTGAACTTTTTTACGAATTTAAAAAATGGATTTTAGAAAAAGGGGAGAAAAAGAGGCTGAATGAGACACGAAAAATATTTTTAATCAAAGAAAGTAGTGTCCTAGTTTTGAATATTTTATGAGCCATCTGTCTCCATTAGAACATGTCCTTCAGAATTCAAAATT</canonical_amplicon>
		<polymorphic_amplicon>TGACCTATTCAAACAGGAAAACCTCCGATTTCGAAAAAAAAATTCAAAAAAAATTGTCGAGTTTTTGAATTCCAGATTTCCGAATTGTGGATTTTTGAACTTTTTTACGAATTTAAAAAATGGATTTTAGAAAAAGGGGAGAAAAAGAGGCTGAATGAGACACGAAAAATATTTTTAATCAAAGAAAGTAGTGTCCTAKTTTTGAATATTTTATGAGCCATCTGTCTCCATTAGAACATGTCCTTCAGAATTCAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5670</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>343735</contig_pos>
        <strand>+</strand>
        <context>CATGACCGCG[A/G]ACCTCTTTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCATCCAGTTGCACCAATGACAAAGAAGTCACATTGCCTTCATGACCGCG</left_flank>
        <right_flank>ACCTCTTTGGACATTCTCGAGTTTCGAATGTCGTATGACTGTAATTTTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTTTCCAAAAATCTGAAAATCCTGAAAACAGCCCGGCCCGGCCCGTTTCAAGTATGCTTAAAACCTGTAATAGAAGCCCCCCATTGTCAGGTTTGAGGCAATTTATCTAGGTTCCTGTAAAAGATATGAAAAAGTTGTCAACTGATAAAATGTTTATCATATAATCACCTAAGTTTCATCAATGAACACATTTTTGATAGCTTTCATAGGAATTCAGATAAATTGGTTGAAAGTTAAAATACTCACTGTCCGTCCGGATATGTGCAGACTTGAAGATTGTCAGCTTCCAGTGGCACGTCCTCGTTCCAAAAGGGTTTTAGGACTATAAATCAAAATTTTCAGAATATTTTAGAATCTTCTAGACTTACCATTGATCCCATCTTCCTCGATTTTCCAAAGCCTTATCTGTTTATCCGCTGAAACTGATACCAGCAATCGTTTGGCTCCATCCAGTTGCACCAATGACAAAGAAGTCACATTGCCTTCATGACCGCGAACCTCTTTGGACATTCTCGAGTTTCGAATGTCGTATGACTGTAATTTTAATTCATGAAATAATGATTACATTAATTAGTGGTACCGTAATTTCACACCCATCATGGTTAAACCCGTTGGAGCAGGAGAATAGTCGGTTAACGCCATCAAACTCGCAGTACATTTGGATGTGACGTTTTCGTGGGAATTCCATGACAACTGCCAGAGAGCGTGGGTCCCAGAGTCTGAAAAATAAAAAATTGGCAAAATTGAGCACTAAAAAAAATTTCTCCTGAATTTTCTCATTGCTCGAAAAGTTCAGTTTTTAGAAAAAAGGGAATTAAAAGAGGAATGTTCGAAATGAAATGCGGCAATCCGCAAATTCCAAAATTACCACGAAAAAACATTCCTTTCTCTTCAAAACCTAGAATCTCGGTTTGCTGGATTTCTATCGAAAAGCTGCCAACAACAAAATTAAAGCTCTAACTTTCTTTAGTATATCCTAAAATTTTCAGAGGAATT</canonical>
            <polymorphic>AAATTTTTCCAAAAATCTGAAAATCCTGAAAACAGCCCGGCCCGGCCCGTTTCAAGTATGCTTAAAACCTGTAATAGAAGCCCCCCATTGTCAGGTTTGAGGCAATTTATCTAGGTTCCTGTAAAAGATATGAAAAAGTTGTCAACTGATAAAATGTTTATCATATAATCACCTAAGTTTCATCAATGAACACATTTTTGATAGCTTTCATAGGAATTCAGATAAATTGGTTGAAAGTTAAAATACTCACTGTCCGTCCGGATATGTGCAGACTTGAAGATTGTCAGCTTCCAGTGGCACGTCCTCGTTCCAAAAGGGTTTTAGGACTATAAATCAAAATTTTCAGAATATTTTAGAATCTTCTAGACTTACCATTGATCCCATCTTCCTCGATTTTCCAAAGCCTTATCTGTTTATCCGCTGAAACTGATACCAGCAATCGTTTGGCTCCATCCAGTTGCACCAATGACAAAGAAGTCACATTGCCTTCATGACCGCGRACCTCTTTGGACATTCTCGAGTTTCGAATGTCGTATGACTGTAATTTTAATTCATGAAATAATGATTACATTAATTAGTGGTACCGTAATTTCACACCCATCATGGTTAAACCCGTTGGAGCAGGAGAATAGTCGGTTAACGCCATCAAACTCGCAGTACATTTGGATGTGACGTTTTCGTGGGAATTCCATGACAACTGCCAGAGAGCGTGGGTCCCAGAGTCTGAAAAATAAAAAATTGGCAAAATTGAGCACTAAAAAAAATTTCTCCTGAATTTTCTCATTGCTCGAAAAGTTCAGTTTTTAGAAAAAAGGGAATTAAAAGAGGAATGTTCGAAATGAAATGCGGCAATCCGCAAATTCCAAAATTACCACGAAAAAACATTCCTTTCTCTTCAAAACCTAGAATCTCGGTTTGCTGGATTTCTATCGAAAAGCTGCCAACAACAAAATTAAAGCTCTAACTTTCTTTAGTATATCCTAAAATTTTCAGAGGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAAAAGGGTTTTAGGACTAT</pcr_primer_p1>
		<pcr_primer_p2>CATGAATTAAAATTACAGTCATACG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCCAAAAGGGTTTTAGGACTATAAATCAAAATTTTCAGAATATTTTAGAATCTTCTAGACTTACCATTGATCCCATCTTCCTCGATTTTCCAAAGCCTTATCTGTTTATCCGCTGAAACTGATACCAGCAATCGTTTGGCTCCATCCAGTTGCACCAATGACAAAGAAGTCACATTGCCTTCATGACCGCGAACCTCTTTGGACATTCTCGAGTTTCGAATGTCGTATGACTGTAATTTTAATTCATG</canonical_amplicon>
		<polymorphic_amplicon>TCCAAAAGGGTTTTAGGACTATAAATCAAAATTTTCAGAATATTTTAGAATCTTCTAGACTTACCATTGATCCCATCTTCCTCGATTTTCCAAAGCCTTATCTGTTTATCCGCTGAAACTGATACCAGCAATCGTTTGGCTCCATCCAGTTGCACCAATGACAAAGAAGTCACATTGCCTTCATGACCGCGRACCTCTTTGGACATTCTCGAGTTTCGAATGTCGTATGACTGTAATTTTAATTCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5671</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>343654</contig_pos>
        <strand>+</strand>
        <context>TCTGTTTATC[C/T]GCTGAAACTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTACCATTGATCCCATCTTCCTCGATTTTCCAAAGCCTTATCTGTTTATC</left_flank>
        <right_flank>GCTGAAACTGATACCAGCAATCGTTTGGCTCCATCCAGTTGCACCAATGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGCGCACTCTTATCTTGAAAATTTTTTTTCTTGTCCATTTTTTTCTGTTAACCCCAAAAAATTTTTTGAAATACAGAAAAAATTTTTCCAAAAATCTGAAAATCCTGAAAACAGCCCGGCCCGGCCCGTTTCAAGTATGCTTAAAACCTGTAATAGAAGCCCCCCATTGTCAGGTTTGAGGCAATTTATCTAGGTTCCTGTAAAAGATATGAAAAAGTTGTCAACTGATAAAATGTTTATCATATAATCACCTAAGTTTCATCAATGAACACATTTTTGATAGCTTTCATAGGAATTCAGATAAATTGGTTGAAAGTTAAAATACTCACTGTCCGTCCGGATATGTGCAGACTTGAAGATTGTCAGCTTCCAGTGGCACGTCCTCGTTCCAAAAGGGTTTTAGGACTATAAATCAAAATTTTCAGAATATTTTAGAATCTTCTAGACTTACCATTGATCCCATCTTCCTCGATTTTCCAAAGCCTTATCTGTTTATCCGCTGAAACTGATACCAGCAATCGTTTGGCTCCATCCAGTTGCACCAATGACAAAGAAGTCACATTGCCTTCATGACCGCGAACCTCTTTGGACATTCTCGAGTTTCGAATGTCGTATGACTGTAATTTTAATTCATGAAATAATGATTACATTAATTAGTGGTACCGTAATTTCACACCCATCATGGTTAAACCCGTTGGAGCAGGAGAATAGTCGGTTAACGCCATCAAACTCGCAGTACATTTGGATGTGACGTTTTCGTGGGAATTCCATGACAACTGCCAGAGAGCGTGGGTCCCAGAGTCTGAAAAATAAAAAATTGGCAAAATTGAGCACTAAAAAAAATTTCTCCTGAATTTTCTCATTGCTCGAAAAGTTCAGTTTTTAGAAAAAAGGGAATTAAAAGAGGAATGTTCGAAATGAAATGCGGCAATCCGCAAATTCCAAAATTACCACGAAAAAACATTCCTTTCTCTTCAAAACCTAGAATCTCGGTTTGC</canonical>
            <polymorphic>TATGCGCACTCTTATCTTGAAAATTTTTTTTCTTGTCCATTTTTTTCTGTTAACCCCAAAAAATTTTTTGAAATACAGAAAAAATTTTTCCAAAAATCTGAAAATCCTGAAAACAGCCCGGCCCGGCCCGTTTCAAGTATGCTTAAAACCTGTAATAGAAGCCCCCCATTGTCAGGTTTGAGGCAATTTATCTAGGTTCCTGTAAAAGATATGAAAAAGTTGTCAACTGATAAAATGTTTATCATATAATCACCTAAGTTTCATCAATGAACACATTTTTGATAGCTTTCATAGGAATTCAGATAAATTGGTTGAAAGTTAAAATACTCACTGTCCGTCCGGATATGTGCAGACTTGAAGATTGTCAGCTTCCAGTGGCACGTCCTCGTTCCAAAAGGGTTTTAGGACTATAAATCAAAATTTTCAGAATATTTTAGAATCTTCTAGACTTACCATTGATCCCATCTTCCTCGATTTTCCAAAGCCTTATCTGTTTATCYGCTGAAACTGATACCAGCAATCGTTTGGCTCCATCCAGTTGCACCAATGACAAAGAAGTCACATTGCCTTCATGACCGCGAACCTCTTTGGACATTCTCGAGTTTCGAATGTCGTATGACTGTAATTTTAATTCATGAAATAATGATTACATTAATTAGTGGTACCGTAATTTCACACCCATCATGGTTAAACCCGTTGGAGCAGGAGAATAGTCGGTTAACGCCATCAAACTCGCAGTACATTTGGATGTGACGTTTTCGTGGGAATTCCATGACAACTGCCAGAGAGCGTGGGTCCCAGAGTCTGAAAAATAAAAAATTGGCAAAATTGAGCACTAAAAAAAATTTCTCCTGAATTTTCTCATTGCTCGAAAAGTTCAGTTTTTAGAAAAAAGGGAATTAAAAGAGGAATGTTCGAAATGAAATGCGGCAATCCGCAAATTCCAAAATTACCACGAAAAAACATTCCTTTCTCTTCAAAACCTAGAATCTCGGTTTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>499 359 77 65</canonical_bands>
                <polymorphic_bands>576 359 65</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCAAAAGGGTTTTAGGACTAT</pcr_primer_p1>
		<pcr_primer_p2>CATGAATTAAAATTACAGTCATACG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCCAAAAGGGTTTTAGGACTATAAATCAAAATTTTCAGAATATTTTAGAATCTTCTAGACTTACCATTGATCCCATCTTCCTCGATTTTCCAAAGCCTTATCTGTTTATCCGCTGAAACTGATACCAGCAATCGTTTGGCTCCATCCAGTTGCACCAATGACAAAGAAGTCACATTGCCTTCATGACCGCGAACCTCTTTGGACATTCTCGAGTTTCGAATGTCGTATGACTGTAATTTTAATTCATG</canonical_amplicon>
		<polymorphic_amplicon>TCCAAAAGGGTTTTAGGACTATAAATCAAAATTTTCAGAATATTTTAGAATCTTCTAGACTTACCATTGATCCCATCTTCCTCGATTTTCCAAAGCCTTATCTGTTTATCYGCTGAAACTGATACCAGCAATCGTTTGGCTCCATCCAGTTGCACCAATGACAAAGAAGTCACATTGCCTTCATGACCGCGAACCTCTTTGGACATTCTCGAGTTTCGAATGTCGTATGACTGTAATTTTAATTCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5672</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>385134</contig_pos>
        <strand>+</strand>
        <context>TAGAACCGAT[G/T]TAATCTTTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGCTGGAAACGTAACCGTAGTTACCAGACCTGGTAACAATAGAACCGAT</left_flank>
        <right_flank>TAATCTTTGTACGTCAGTGCGCAATCAAAATCGTCCAAATCCACCTGAAA</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATATGGCTCTGCCTAGGATGAATAAAACTTGAGACAAGAGTCAAGCTCAAGTGGTCTGGATAATAAAAAAAGGATACTTTTTTTCTTGAGTGGAGATCAAACTACAAACGAAATATGAATTTTAGTTTAGTCGCAGATTTTAAATTTTCTAGGTACCCATACTTACCGTAAGCGCTCTCTAACTTTGAGCACATGTATCTCATTTCCTGTGAAAAATTCCGGAAAGAGGTCAATTAGCAAAATGTTCATCATAATATCACAAATATTTTATTAGTGGACAAATTTTTGATTAGGAACCGAGATAATTGAAATCAAAGTGGATTGATATAAGAGAAATACGATGTTTTCAACCAACAAGTTTATTTTCACAGGAAACAATTTCAGAATGCAAAGAATTATCACATTGTCATTGTCCATCCATTGTCGGTTTTCTCCCATTTTATTATCTTGCTGGAAACGTAACCGTAGTTACCAGACCTGGTAACAATAGAACCGATGTAATCTTTGTACGTCAGTGCGCAATCAAAATCGTCCAAATCCACCTGAAAATTTGAGTTAAAACCTTTAATAAAAGGGACCCACACTGTTAACGTTTTATCTCGATTCTTATGCAAGATATCAAAAATTCATCAACTGACAAAGCATTTCTTTATGAATGACGATTCATCAGTGGACAACGTTTTTGTATCTTTGACAGGAACCGGGATAATTGAGCTATTAGAATACGGTACTTATTTCCAATTCCCTCACCTTAAACCCAACGACTTCTCCATCCTTATCAGTAGTCTCTTCAATAATAATAGTTGTTCCTTCCGTATAATCATAGAATCTGCATGTTCGTCTTGTGTCCATATCAGCAAGAAGCGGCAAAACTTGCTGGCAAAACACTCCTGGATACATTCCTTCGCACTGTGGTTGGTGAAATAACTTTCCCATAAAACATGATCATTTTGGTGTAGGTTGGTTTGGGACTGATCGAAGACATCAATACAACCACG</canonical>
            <polymorphic>GAATATGGCTCTGCCTAGGATGAATAAAACTTGAGACAAGAGTCAAGCTCAAGTGGTCTGGATAATAAAAAAAGGATACTTTTTTTCTTGAGTGGAGATCAAACTACAAACGAAATATGAATTTTAGTTTAGTCGCAGATTTTAAATTTTCTAGGTACCCATACTTACCGTAAGCGCTCTCTAACTTTGAGCACATGTATCTCATTTCCTGTGAAAAATTCCGGAAAGAGGTCAATTAGCAAAATGTTCATCATAATATCACAAATATTTTATTAGTGGACAAATTTTTGATTAGGAACCGAGATAATTGAAATCAAAGTGGATTGATATAAGAGAAATACGATGTTTTCAACCAACAAGTTTATTTTCACAGGAAACAATTTCAGAATGCAAAGAATTATCACATTGTCATTGTCCATCCATTGTCGGTTTTCTCCCATTTTATTATCTTGCTGGAAACGTAACCGTAGTTACCAGACCTGGTAACAATAGAACCGATKTAATCTTTGTACGTCAGTGCGCAATCAAAATCGTCCAAATCCACCTGAAAATTTGAGTTAAAACCTTTAATAAAAGGGACCCACACTGTTAACGTTTTATCTCGATTCTTATGCAAGATATCAAAAATTCATCAACTGACAAAGCATTTCTTTATGAATGACGATTCATCAGTGGACAACGTTTTTGTATCTTTGACAGGAACCGGGATAATTGAGCTATTAGAATACGGTACTTATTTCCAATTCCCTCACCTTAAACCCAACGACTTCTCCATCCTTATCAGTAGTCTCTTCAATAATAATAGTTGTTCCTTCCGTATAATCATAGAATCTGCATGTTCGTCTTGTGTCCATATCAGCAAGAAGCGGCAAAACTTGCTGGCAAAACACTCCTGGATACATTCCTTCGCACTGTGGTTGGTGAAATAACTTTCCCATAAAACATGATCATTTTGGTGTAGGTTGGTTTGGGACTGATCGAAGACATCAATACAACCACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAGAAATACGATGTTTTCAAC</pcr_primer_p1>
		<pcr_primer_p2>CTCAAATTTTCAGGTGGATTT</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>AAGAGAAATACGATGTTTTCAACCAACAAGTTTATTTTCACAGGAAACAATTTCAGAATGCAAAGAATTATCACATTGTCATTGTCCATCCATTGTCGGTTTTCTCCCATTTTATTATCTTGCTGGAAACGTAACCGTAGTTACCAGACCTGGTAACAATAGAACCGATGTAATCTTTGTACGTCAGTGCGCAATCAAAATCGTCCAAATCCACCTGAAAATTTGAG</canonical_amplicon>
		<polymorphic_amplicon>AAGAGAAATACGATGTTTTCAACCAACAAGTTTATTTTCACAGGAAACAATTTCAGAATGCAAAGAATTATCACATTGTCATTGTCCATCCATTGTCGGTTTTCTCCCATTTTATTATCTTGCTGGAAACGTAACCGTAGTTACCAGACCTGGTAACAATAGAACCGATKTAATCTTTGTACGTCAGTGCGCAATCAAAATCGTCCAAATCCACCTGAAAATTTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5673</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>542431</contig_pos>
        <strand></strand>
        <context>GCTTGGCGAG[T/C]TCACGGAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGATCTCCTCCACGCTTCGCTGAGCTGCAATCGCTGAACTGCTTGGCGAG</left_flank>
        <right_flank>TCACGGAACTTTCCCTGGACATCCGATGCGTCTTTGAGCTCTTTTTCGTA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCCGAAATTTTTGTCTGAAATTTGACAGGATGGCATTCGCGTAGATTACTGTAGTTTTTTTTGCAAACACAATCACGTCAGAATGCAGACAAAAGAACTACAAAATTTAAAGATTTTTCACAGTAATCTACAGTAATCCTCGCGAACAACATCATGTCAAATTTCAGGCAAAAATTAGGGAAATCAAAAAAGAATCTTTGAAAATAGCTGAAAACCCTGAAAAGGCCAAAAAAATTCTGCAAAAAATCGACGAAAAAATTAATTATTCTCTCGAAAAATTGCTGATTTTTCAGAGTTTCCAGTTTTGGCGGGAATTCAAAAAGAGAAAATTCGAGAACATTCCAAAACAGATTTTTTGAGATTTTTGGTTCTATATGAATCTACATATTTTTCCTCTCGTTTGAAGGCCTTATGAGAATTCAGAAGATAAAAAAAAACGTACTCCAAGATCTCCTCCACGCTTCGCTGAGCTGCAATCGCTGAACTGCTTGGCGAGTTCACGGAACTTTCCCTGGACATCCGATGCGTCTTTGAGCTCTTTTTCGTAGTCTAAAATGATGAAATATGACTTTTTTTAAACAGAAATCTTGCTCCAACTACAGTAGTTGAACTACTAACTTCTCAAAATATTGATCGCATCCTCCTTGGATCGTGTGATACGATCCGAACGCCACGACGATGGATTACGACTTCCTTCGTGCTTCACCAGAAGATGAAGACATTGGACTTGAGTCAGCTCGGATCCTTTTCCGAACGCCGTATGCTCCGGTCGTTCCCATTGGGATTGACCGGTAGCCGTGTTGAAGTAGTAGACTCGGTCTGGAATTTTTTTTTGATAAAAAAATCGCATAAACTTTTTTTCAACTTTCCGACATTTCATCGCTTTTTTCTTTTTTATTAATCAAAAACTGTTAAAAACCATCAAAAATTATCAAAAAATCGATAAAATTCCTACAGTAATACTTTGAAGGCGCAGCCTTCAGGAGGAGCATGGGTT</canonical>
            <polymorphic>TTTTCCGAAATTTTTGTCTGAAATTTGACAGGATGGCATTCGCGTAGATTACTGTAGTTTTTTTTGCAAACACAATCACGTCAGAATGCAGACAAAAGAACTACAAAATTTAAAGATTTTTCACAGTAATCTACAGTAATCCTCGCGAACAACATCATGTCAAATTTCAGGCAAAAATTAGGGAAATCAAAAAAGAATCTTTGAAAATAGCTGAAAACCCTGAAAAGGCCAAAAAAATTCTGCAAAAAATCGACGAAAAAATTAATTATTCTCTCGAAAAATTGCTGATTTTTCAGAGTTTCCAGTTTTGGCGGGAATTCAAAAAGAGAAAATTCGAGAACATTCCAAAACAGATTTTTTGAGATTTTTGGTTCTATATGAATCTACATATTTTTCCTCTCGTTTGAAGGCCTTATGAGAATTCAGAAGATAAAAAAAAACGTACTCCAAGATCTCCTCCACGCTTCGCTGAGCTGCAATCGCTGAACTGCTTGGCGAGYTCACGGAACTTTCCCTGGACATCCGATGCGTCTTTGAGCTCTTTTTCGTAGTCTAAAATGATGAAATATGACTTTTTTTAAACAGAAATCTTGCTCCAACTACAGTAGTTGAACTACTAACTTCTCAAAATATTGATCGCATCCTCCTTGGATCGTGTGATACGATCCGAACGCCACGACGATGGATTACGACTTCCTTCGTGCTTCACCAGAAGATGAAGACATTGGACTTGAGTCAGCTCGGATCCTTTTCCGAACGCCGTATGCTCCGGTCGTTCCCATTGGGATTGACCGGTAGCCGTGTTGAAGTAGTAGACTCGGTCTGGAATTTTTTTTTGATAAAAAAATCGCATAAACTTTTTTTCAACTTTCCGACATTTCATCGCTTTTTTCTTTTTTATTAATCAAAAACTGTTAAAAACCATCAAAAATTATCAAAAAATCGATAAAATTCCTACAGTAATACTTTGAAGGCGCAGCCTTCAGGAGGAGCATGGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 313 186</canonical_bands>
                <polymorphic_bands>814 186</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAGATTTTTGGTTCTATATG</pcr_primer_p1>
		<pcr_primer_p2>TACTGTAGTTGGAGCAAGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAGATTTTTGGTTCTATATGAATCTACATATTTTTCCTCTCGTTTGAAGGCCTTATGAGAATTCAGAAGATAAAAAAAAACGTACTCCAAGATCTCCTCCACGCTTCGCTGAGCTGCAATCGCTGAACTGCTTGGCGAGTTCACGGAACTTTCCCTGGACATCCGATGCGTCTTTGAGCTCTTTTTCGTAGTCTAAAATGATGAAATATGACTTTTTTTAAACAGAAATCTTGCTCCAACTACAGTA</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAGATTTTTGGTTCTATATGAATCTACATATTTTTCCTCTCGTTTGAAGGCCTTATGAGAATTCAGAAGATAAAAAAAAACGTACTCCAAGATCTCCTCCACGCTTCGCTGAGCTGCAATCGCTGAACTGCTTGGCGAGYTCACGGAACTTTCCCTGGACATCCGATGCGTCTTTGAGCTCTTTTTCGTAGTCTAAAATGATGAAATATGACTTTTTTTAAACAGAAATCTTGCTCCAACTACAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5674</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>542449</contig_pos>
        <strand></strand>
        <context>ACTTTCCCTG[G/A]ACATCCGATG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GCTGAGCTGCAATCGCTGAACTGCTTGGCGAGTTCACGGAACTTTCCCTG</left_flank>
        <right_flank>ACATCCGATGCGTCTTTGAGCTCTTTTTCGTAGTCTAAAATGATGAAATA</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAATTTGACAGGATGGCATTCGCGTAGATTACTGTAGTTTTTTTTGCAAACACAATCACGTCAGAATGCAGACAAAAGAACTACAAAATTTAAAGATTTTTCACAGTAATCTACAGTAATCCTCGCGAACAACATCATGTCAAATTTCAGGCAAAAATTAGGGAAATCAAAAAAGAATCTTTGAAAATAGCTGAAAACCCTGAAAAGGCCAAAAAAATTCTGCAAAAAATCGACGAAAAAATTAATTATTCTCTCGAAAAATTGCTGATTTTTCAGAGTTTCCAGTTTTGGCGGGAATTCAAAAAGAGAAAATTCGAGAACATTCCAAAACAGATTTTTTGAGATTTTTGGTTCTATATGAATCTACATATTTTTCCTCTCGTTTGAAGGCCTTATGAGAATTCAGAAGATAAAAAAAAACGTACTCCAAGATCTCCTCCACGCTTCGCTGAGCTGCAATCGCTGAACTGCTTGGCGAGTTCACGGAACTTTCCCTGGACATCCGATGCGTCTTTGAGCTCTTTTTCGTAGTCTAAAATGATGAAATATGACTTTTTTTAAACAGAAATCTTGCTCCAACTACAGTAGTTGAACTACTAACTTCTCAAAATATTGATCGCATCCTCCTTGGATCGTGTGATACGATCCGAACGCCACGACGATGGATTACGACTTCCTTCGTGCTTCACCAGAAGATGAAGACATTGGACTTGAGTCAGCTCGGATCCTTTTCCGAACGCCGTATGCTCCGGTCGTTCCCATTGGGATTGACCGGTAGCCGTGTTGAAGTAGTAGACTCGGTCTGGAATTTTTTTTTGATAAAAAAATCGCATAAACTTTTTTTCAACTTTCCGACATTTCATCGCTTTTTTCTTTTTTATTAATCAAAAACTGTTAAAAACCATCAAAAATTATCAAAAAATCGATAAAATTCCTACAGTAATACTTTGAAGGCGCAGCCTTCAGGAGGAGCATGGGTTTCGACACGACATTCGACT</canonical>
            <polymorphic>TGAAATTTGACAGGATGGCATTCGCGTAGATTACTGTAGTTTTTTTTGCAAACACAATCACGTCAGAATGCAGACAAAAGAACTACAAAATTTAAAGATTTTTCACAGTAATCTACAGTAATCCTCGCGAACAACATCATGTCAAATTTCAGGCAAAAATTAGGGAAATCAAAAAAGAATCTTTGAAAATAGCTGAAAACCCTGAAAAGGCCAAAAAAATTCTGCAAAAAATCGACGAAAAAATTAATTATTCTCTCGAAAAATTGCTGATTTTTCAGAGTTTCCAGTTTTGGCGGGAATTCAAAAAGAGAAAATTCGAGAACATTCCAAAACAGATTTTTTGAGATTTTTGGTTCTATATGAATCTACATATTTTTCCTCTCGTTTGAAGGCCTTATGAGAATTCAGAAGATAAAAAAAAACGTACTCCAAGATCTCCTCCACGCTTCGCTGAGCTGCAATCGCTGAACTGCTTGGCGAGTTCACGGAACTTTCCCTGRACATCCGATGCGTCTTTGAGCTCTTTTTCGTAGTCTAAAATGATGAAATATGACTTTTTTTAAACAGAAATCTTGCTCCAACTACAGTAGTTGAACTACTAACTTCTCAAAATATTGATCGCATCCTCCTTGGATCGTGTGATACGATCCGAACGCCACGACGATGGATTACGACTTCCTTCGTGCTTCACCAGAAGATGAAGACATTGGACTTGAGTCAGCTCGGATCCTTTTCCGAACGCCGTATGCTCCGGTCGTTCCCATTGGGATTGACCGGTAGCCGTGTTGAAGTAGTAGACTCGGTCTGGAATTTTTTTTTGATAAAAAAATCGCATAAACTTTTTTTCAACTTTCCGACATTTCATCGCTTTTTTCTTTTTTATTAATCAAAAACTGTTAAAAACCATCAAAAATTATCAAAAAATCGATAAAATTCCTACAGTAATACTTTGAAGGCGCAGCCTTCAGGAGGAGCATGGGTTTCGACACGACATTCGACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>495 372 133</canonical_bands>
                <polymorphic_bands>628 372</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAGATTTTTGGTTCTATATG</pcr_primer_p1>
		<pcr_primer_p2>TACTGTAGTTGGAGCAAGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAGATTTTTGGTTCTATATGAATCTACATATTTTTCCTCTCGTTTGAAGGCCTTATGAGAATTCAGAAGATAAAAAAAAACGTACTCCAAGATCTCCTCCACGCTTCGCTGAGCTGCAATCGCTGAACTGCTTGGCGAGTTCACGGAACTTTCCCTGGACATCCGATGCGTCTTTGAGCTCTTTTTCGTAGTCTAAAATGATGAAATATGACTTTTTTTAAACAGAAATCTTGCTCCAACTACAGTA</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAGATTTTTGGTTCTATATGAATCTACATATTTTTCCTCTCGTTTGAAGGCCTTATGAGAATTCAGAAGATAAAAAAAAACGTACTCCAAGATCTCCTCCACGCTTCGCTGAGCTGCAATCGCTGAACTGCTTGGCGAGTTCACGGAACTTTCCCTGRACATCCGATGCGTCTTTGAGCTCTTTTTCGTAGTCTAAAATGATGAAATATGACTTTTTTTAAACAGAAATCTTGCTCCAACTACAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5675</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>542704</contig_pos>
        <strand></strand>
        <context>TATGCTCCGG[T/G]CGTTCCCATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CATTGGACTTGAGTCAGCTCGGATCCTTTTCCGAACGCCGTATGCTCCGG</left_flank>
        <right_flank>CGTTCCCATTGGGATTGACCGGTAGCCGTGTTGAAGTAGTAGACTCGGTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAAAAATTGCTGATTTTTCAGAGTTTCCAGTTTTGGCGGGAATTCAAAAAGAGAAAATTCGAGAACATTCCAAAACAGATTTTTTGAGATTTTTGGTTCTATATGAATCTACATATTTTTCCTCTCGTTTGAAGGCCTTATGAGAATTCAGAAGATAAAAAAAAACGTACTCCAAGATCTCCTCCACGCTTCGCTGAGCTGCAATCGCTGAACTGCTTGGCGAGTTCACGGAACTTTCCCTGGACATCCGATGCGTCTTTGAGCTCTTTTTCGTAGTCTAAAATGATGAAATATGACTTTTTTTAAACAGAAATCTTGCTCCAACTACAGTAGTTGAACTACTAACTTCTCAAAATATTGATCGCATCCTCCTTGGATCGTGTGATACGATCCGAACGCCACGACGATGGATTACGACTTCCTTCGTGCTTCACCAGAAGATGAAGACATTGGACTTGAGTCAGCTCGGATCCTTTTCCGAACGCCGTATGCTCCGGTCGTTCCCATTGGGATTGACCGGTAGCCGTGTTGAAGTAGTAGACTCGGTCTGGAATTTTTTTTTGATAAAAAAATCGCATAAACTTTTTTTCAACTTTCCGACATTTCATCGCTTTTTTCTTTTTTATTAATCAAAAACTGTTAAAAACCATCAAAAATTATCAAAAAATCGATAAAATTCCTACAGTAATACTTTGAAGGCGCAGCCTTCAGGAGGAGCATGGGTTTCGACACGACATTCGACTTTTTAATTTATTTTTTTTTCAATTTTTCTCTTTTTTTTCTTACCATTGGTGCGACTCTGGCGCTTCTCCCATCCTGGTGGCAGCGAGTTGTCGGACATTCTGAAATTTTTCTTTAAATTTTAAATTAAAAATTTTTCCGAAAATATAAATCGATCTAACAAGTTCCAAATATCTAGATTCTGGTTAATCAAATAATTTATGGAAAGACAATTTTCAAATTATGCATGCAATTTATAAAAAAACCTCGTAAAAAAA</canonical>
            <polymorphic>TCGAAAAATTGCTGATTTTTCAGAGTTTCCAGTTTTGGCGGGAATTCAAAAAGAGAAAATTCGAGAACATTCCAAAACAGATTTTTTGAGATTTTTGGTTCTATATGAATCTACATATTTTTCCTCTCGTTTGAAGGCCTTATGAGAATTCAGAAGATAAAAAAAAACGTACTCCAAGATCTCCTCCACGCTTCGCTGAGCTGCAATCGCTGAACTGCTTGGCGAGTTCACGGAACTTTCCCTGGACATCCGATGCGTCTTTGAGCTCTTTTTCGTAGTCTAAAATGATGAAATATGACTTTTTTTAAACAGAAATCTTGCTCCAACTACAGTAGTTGAACTACTAACTTCTCAAAATATTGATCGCATCCTCCTTGGATCGTGTGATACGATCCGAACGCCACGACGATGGATTACGACTTCCTTCGTGCTTCACCAGAAGATGAAGACATTGGACTTGAGTCAGCTCGGATCCTTTTCCGAACGCCGTATGCTCCGGKCGTTCCCATTGGGATTGACCGGTAGCCGTGTTGAAGTAGTAGACTCGGTCTGGAATTTTTTTTTGATAAAAAAATCGCATAAACTTTTTTTCAACTTTCCGACATTTCATCGCTTTTTTCTTTTTTATTAATCAAAAACTGTTAAAAACCATCAAAAATTATCAAAAAATCGATAAAATTCCTACAGTAATACTTTGAAGGCGCAGCCTTCAGGAGGAGCATGGGTTTCGACACGACATTCGACTTTTTAATTTATTTTTTTTTCAATTTTTCTCTTTTTTTTCTTACCATTGGTGCGACTCTGGCGCTTCTCCCATCCTGGTGGCAGCGAGTTGTCGGACATTCTGAAATTTTTCTTTAAATTTTAAATTAAAAATTTTTCCGAAAATATAAATCGATCTAACAAGTTCCAAATATCTAGATTCTGGTTAATCAAATAATTTATGGAAAGACAATTTTCAAATTATGCATGCAATTTATAAAAAAACCTCGTAAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>495 482 23</canonical_bands>
                <polymorphic_bands>518 482</polymorphic_bands>
            </assay>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGAAATCTTGCTCCAACTAC</pcr_primer_p1>
		<pcr_primer_p2>AAATTCCAGACCGAGTCTACTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACAGAAATCTTGCTCCAACTACAGTAGTTGAACTACTAACTTCTCAAAATATTGATCGCATCCTCCTTGGATCGTGTGATACGATCCGAACGCCACGACGATGGATTACGACTTCCTTCGTGCTTCACCAGAAGATGAAGACATTGGACTTGAGTCAGCTCGGATCCTTTTCCGAACGCCGTATGCTCCGGTCGTTCCCATTGGGATTGACCGGTAGCCGTGTTGAAGTAGTAGACTCGGTCTGGAATTT</canonical_amplicon>
		<polymorphic_amplicon>ACAGAAATCTTGCTCCAACTACAGTAGTTGAACTACTAACTTCTCAAAATATTGATCGCATCCTCCTTGGATCGTGTGATACGATCCGAACGCCACGACGATGGATTACGACTTCCTTCGTGCTTCACCAGAAGATGAAGACATTGGACTTGAGTCAGCTCGGATCCTTTTCCGAACGCCGTATGCTCCGGKCGTTCCCATTGGGATTGACCGGTAGCCGTGTTGAAGTAGTAGACTCGGTCTGGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5676</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>542740</contig_pos>
        <strand></strand>
        <context>CCGTGTTGAA[G/A]TAGTAGACTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GCCGTATGCTCCGGTCGTTCCCATTGGGATTGACCGGTAGCCGTGTTGAA</left_flank>
        <right_flank>TAGTAGACTCGGTCTGGAATTTTTTTTTGATAAAAAAATCGCATAAACTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCGGGAATTCAAAAAGAGAAAATTCGAGAACATTCCAAAACAGATTTTTTGAGATTTTTGGTTCTATATGAATCTACATATTTTTCCTCTCGTTTGAAGGCCTTATGAGAATTCAGAAGATAAAAAAAAACGTACTCCAAGATCTCCTCCACGCTTCGCTGAGCTGCAATCGCTGAACTGCTTGGCGAGTTCACGGAACTTTCCCTGGACATCCGATGCGTCTTTGAGCTCTTTTTCGTAGTCTAAAATGATGAAATATGACTTTTTTTAAACAGAAATCTTGCTCCAACTACAGTAGTTGAACTACTAACTTCTCAAAATATTGATCGCATCCTCCTTGGATCGTGTGATACGATCCGAACGCCACGACGATGGATTACGACTTCCTTCGTGCTTCACCAGAAGATGAAGACATTGGACTTGAGTCAGCTCGGATCCTTTTCCGAACGCCGTATGCTCCGGTCGTTCCCATTGGGATTGACCGGTAGCCGTGTTGAAGTAGTAGACTCGGTCTGGAATTTTTTTTTGATAAAAAAATCGCATAAACTTTTTTTCAACTTTCCGACATTTCATCGCTTTTTTCTTTTTTATTAATCAAAAACTGTTAAAAACCATCAAAAATTATCAAAAAATCGATAAAATTCCTACAGTAATACTTTGAAGGCGCAGCCTTCAGGAGGAGCATGGGTTTCGACACGACATTCGACTTTTTAATTTATTTTTTTTTCAATTTTTCTCTTTTTTTTCTTACCATTGGTGCGACTCTGGCGCTTCTCCCATCCTGGTGGCAGCGAGTTGTCGGACATTCTGAAATTTTTCTTTAAATTTTAAATTAAAAATTTTTCCGAAAATATAAATCGATCTAACAAGTTCCAAATATCTAGATTCTGGTTAATCAAATAATTTATGGAAAGACAATTTTCAAATTATGCATGCAATTTATAAAAAAACCTCGTAAAAAAAGAATTCTGGCAAATCAGAGGAAGAAAAGCTACGAAG</canonical>
            <polymorphic>GGCGGGAATTCAAAAAGAGAAAATTCGAGAACATTCCAAAACAGATTTTTTGAGATTTTTGGTTCTATATGAATCTACATATTTTTCCTCTCGTTTGAAGGCCTTATGAGAATTCAGAAGATAAAAAAAAACGTACTCCAAGATCTCCTCCACGCTTCGCTGAGCTGCAATCGCTGAACTGCTTGGCGAGTTCACGGAACTTTCCCTGGACATCCGATGCGTCTTTGAGCTCTTTTTCGTAGTCTAAAATGATGAAATATGACTTTTTTTAAACAGAAATCTTGCTCCAACTACAGTAGTTGAACTACTAACTTCTCAAAATATTGATCGCATCCTCCTTGGATCGTGTGATACGATCCGAACGCCACGACGATGGATTACGACTTCCTTCGTGCTTCACCAGAAGATGAAGACATTGGACTTGAGTCAGCTCGGATCCTTTTCCGAACGCCGTATGCTCCGGTCGTTCCCATTGGGATTGACCGGTAGCCGTGTTGAARTAGTAGACTCGGTCTGGAATTTTTTTTTGATAAAAAAATCGCATAAACTTTTTTTCAACTTTCCGACATTTCATCGCTTTTTTCTTTTTTATTAATCAAAAACTGTTAAAAACCATCAAAAATTATCAAAAAATCGATAAAATTCCTACAGTAATACTTTGAAGGCGCAGCCTTCAGGAGGAGCATGGGTTTCGACACGACATTCGACTTTTTAATTTATTTTTTTTTCAATTTTTCTCTTTTTTTTCTTACCATTGGTGCGACTCTGGCGCTTCTCCCATCCTGGTGGCAGCGAGTTGTCGGACATTCTGAAATTTTTCTTTAAATTTTAAATTAAAAATTTTTCCGAAAATATAAATCGATCTAACAAGTTCCAAATATCTAGATTCTGGTTAATCAAATAATTTATGGAAAGACAATTTTCAAATTATGCATGCAATTTATAAAAAAACCTCGTAAAAAAAGAATTCTGGCAAATCAGAGGAAGAAAAGCTACGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATGAAGACATTGGACTTGAG</pcr_primer_p1>
		<pcr_primer_p2>ACTGTAGGAATTTTATCGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGATGAAGACATTGGACTTGAGTCAGCTCGGATCCTTTTCCGAACGCCGTATGCTCCGGTCGTTCCCATTGGGATTGACCGGTAGCCGTGTTGAAGTAGTAGACTCGGTCTGGAATTTTTTTTTGATAAAAAAATCGCATAAACTTTTTTTCAACTTTCCGACATTTCATCGCTTTTTTCTTTTTTATTAATCAAAAACTGTTAAAAACCATCAAAAATTATCAAAAAATCGATAAAATTCCTACAGT</canonical_amplicon>
		<polymorphic_amplicon>AGATGAAGACATTGGACTTGAGTCAGCTCGGATCCTTTTCCGAACGCCGTATGCTCCGGTCGTTCCCATTGGGATTGACCGGTAGCCGTGTTGAARTAGTAGACTCGGTCTGGAATTTTTTTTTGATAAAAAAATCGCATAAACTTTTTTTCAACTTTCCGACATTTCATCGCTTTTTTCTTTTTTATTAATCAAAAACTGTTAAAAACCATCAAAAATTATCAAAAAATCGATAAAATTCCTACAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5677</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>542788</contig_pos>
        <strand></strand>
        <context>ATCGCATAAA[C/A]YTTTTTTCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AAGTAGTAGACTCGGTCTGGAATTTTTTTTTGATAAAAAAATCGCATAAA</left_flank>
        <right_flank>TTTTTTTCAACTTTCCGACATTTCATCGCTTTTTTCTTTTTTATTAATCA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAGATTTTTGGTTCTATATGAATCTACATATTTTTCCTCTCGTTTGAAGGCCTTATGAGAATTCAGAAGATAAAAAAAAACGTACTCCAAGATCTCCTCCACGCTTCGCTGAGCTGCAATCGCTGAACTGCTTGGCGAGTTCACGGAACTTTCCCTGGACATCCGATGCGTCTTTGAGCTCTTTTTCGTAGTCTAAAATGATGAAATATGACTTTTTTTAAACAGAAATCTTGCTCCAACTACAGTAGTTGAACTACTAACTTCTCAAAATATTGATCGCATCCTCCTTGGATCGTGTGATACGATCCGAACGCCACGACGATGGATTACGACTTCCTTCGTGCTTCACCAGAAGATGAAGACATTGGACTTGAGTCAGCTCGGATCCTTTTCCGAACGCCGTATGCTCCGGTCGTTCCCATTGGGATTGACCGGTAGCCGTGTTGAAGTAGTAGACTCGGTCTGGAATTTTTTTTTGATAAAAAAATCGCATAAACTTTTTTTCAACTTTCCGACATTTCATCGCTTTTTTCTTTTTTATTAATCAAAAACTGTTAAAAACCATCAAAAATTATCAAAAAATCGATAAAATTCCTACAGTAATACTTTGAAGGCGCAGCCTTCAGGAGGAGCATGGGTTTCGACACGACATTCGACTTTTTAATTTATTTTTTTTTCAATTTTTCTCTTTTTTTTCTTACCATTGGTGCGACTCTGGCGCTTCTCCCATCCTGGTGGCAGCGAGTTGTCGGACATTCTGAAATTTTTCTTTAAATTTTAAATTAAAAATTTTTCCGAAAATATAAATCGATCTAACAAGTTCCAAATATCTAGATTCTGGTTAATCAAATAATTTATGGAAAGACAATTTTCAAATTATGCATGCAATTTATAAAAAAACCTCGTAAAAAAAGAATTCTGGCAAATCAGAGGAAGAAAAGCTACGAAGAAGGACCGGTATGAGGGAGAAAAATGCAATTCTTACACACAAAAAAAA</canonical>
            <polymorphic>TTTGAGATTTTTGGTTCTATATGAATCTACATATTTTTCCTCTCGTTTGAAGGCCTTATGAGAATTCAGAAGATAAAAAAAAACGTACTCCAAGATCTCCTCCACGCTTCGCTGAGCTGCAATCGCTGAACTGCTTGGCGAGTTCACGGAACTTTCCCTGGACATCCGATGCGTCTTTGAGCTCTTTTTCGTAGTCTAAAATGATGAAATATGACTTTTTTTAAACAGAAATCTTGCTCCAACTACAGTAGTTGAACTACTAACTTCTCAAAATATTGATCGCATCCTCCTTGGATCGTGTGATACGATCCGAACGCCACGACGATGGATTACGACTTCCTTCGTGCTTCACCAGAAGATGAAGACATTGGACTTGAGTCAGCTCGGATCCTTTTCCGAACGCCGTATGCTCCGGTCGTTCCCATTGGGATTGACCGGTAGCCGTGTTGAAGTAGTAGACTCGGTCTGGAATTTTTTTTTGATAAAAAAATCGCATAAAMTTTTTTTCAACTTTCCGACATTTCATCGCTTTTTTCTTTTTTATTAATCAAAAACTGTTAAAAACCATCAAAAATTATCAAAAAATCGATAAAATTCCTACAGTAATACTTTGAAGGCGCAGCCTTCAGGAGGAGCATGGGTTTCGACACGACATTCGACTTTTTAATTTATTTTTTTTTCAATTTTTCTCTTTTTTTTCTTACCATTGGTGCGACTCTGGCGCTTCTCCCATCCTGGTGGCAGCGAGTTGTCGGACATTCTGAAATTTTTCTTTAAATTTTAAATTAAAAATTTTTCCGAAAATATAAATCGATCTAACAAGTTCCAAATATCTAGATTCTGGTTAATCAAATAATTTATGGAAAGACAATTTTCAAATTATGCATGCAATTTATAAAAAAACCTCGTAAAAAAAGAATTCTGGCAAATCAGAGGAAGAAAAGCTACGAAGAAGGACCGGTATGAGGGAGAAAAATGCAATTCTTACACACAAAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATGAAGACATTGGACTTGAG</pcr_primer_p1>
		<pcr_primer_p2>ACTGTAGGAATTTTATCGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGATGAAGACATTGGACTTGAGTCAGCTCGGATCCTTTTCCGAACGCCGTATGCTCCGGTCGTTCCCATTGGGATTGACCGGTAGCCGTGTTGAAGTAGTAGACTCGGTCTGGAATTTTTTTTTGATAAAAAAATCGCATAAACTTTTTTTCAACTTTCCGACATTTCATCGCTTTTTTCTTTTTTATTAATCAAAAACTGTTAAAAACCATCAAAAATTATCAAAAAATCGATAAAATTCCTACAGT</canonical_amplicon>
		<polymorphic_amplicon>AGATGAAGACATTGGACTTGAGTCAGCTCGGATCCTTTTCCGAACGCCGTATGCTCCGGTCGTTCCCATTGGGATTGACCGGTAGCCGTGTTGAAGTAGTAGACTCGGTCTGGAATTTTTTTTTGATAAAAAAATCGCATAAAMTTTTTTTCAACTTTCCGACATTTCATCGCTTTTTTCTTTTTTATTAATCAAAAACTGTTAAAAACCATCAAAAATTATCAAAAAATCGATAAAATTCCTACAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5678</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>542789</contig_pos>
        <strand></strand>
        <context>TCGCATAAAM[T/C]TTTTTTCAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGTAGTAGACTCGGTCTGGAATTTTTTTTTGATAAAAAAATCGCATAAAC</left_flank>
        <right_flank>TTTTTTCAACTTTCCGACATTTCATCGCTTTTTTCTTTTTTATTAATCAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAGATTTTTGGTTCTATATGAATCTACATATTTTTCCTCTCGTTTGAAGGCCTTATGAGAATTCAGAAGATAAAAAAAAACGTACTCCAAGATCTCCTCCACGCTTCGCTGAGCTGCAATCGCTGAACTGCTTGGCGAGTTCACGGAACTTTCCCTGGACATCCGATGCGTCTTTGAGCTCTTTTTCGTAGTCTAAAATGATGAAATATGACTTTTTTTAAACAGAAATCTTGCTCCAACTACAGTAGTTGAACTACTAACTTCTCAAAATATTGATCGCATCCTCCTTGGATCGTGTGATACGATCCGAACGCCACGACGATGGATTACGACTTCCTTCGTGCTTCACCAGAAGATGAAGACATTGGACTTGAGTCAGCTCGGATCCTTTTCCGAACGCCGTATGCTCCGGTCGTTCCCATTGGGATTGACCGGTAGCCGTGTTGAAGTAGTAGACTCGGTCTGGAATTTTTTTTTGATAAAAAAATCGCATAAACTTTTTTTCAACTTTCCGACATTTCATCGCTTTTTTCTTTTTTATTAATCAAAAACTGTTAAAAACCATCAAAAATTATCAAAAAATCGATAAAATTCCTACAGTAATACTTTGAAGGCGCAGCCTTCAGGAGGAGCATGGGTTTCGACACGACATTCGACTTTTTAATTTATTTTTTTTTCAATTTTTCTCTTTTTTTTCTTACCATTGGTGCGACTCTGGCGCTTCTCCCATCCTGGTGGCAGCGAGTTGTCGGACATTCTGAAATTTTTCTTTAAATTTTAAATTAAAAATTTTTCCGAAAATATAAATCGATCTAACAAGTTCCAAATATCTAGATTCTGGTTAATCAAATAATTTATGGAAAGACAATTTTCAAATTATGCATGCAATTTATAAAAAAACCTCGTAAAAAAAGAATTCTGGCAAATCAGAGGAAGAAAAGCTACGAAGAAGGACCGGTATGAGGGAGAAAAATGCAATTCTTACACACAAAAAAAAG</canonical>
            <polymorphic>TTGAGATTTTTGGTTCTATATGAATCTACATATTTTTCCTCTCGTTTGAAGGCCTTATGAGAATTCAGAAGATAAAAAAAAACGTACTCCAAGATCTCCTCCACGCTTCGCTGAGCTGCAATCGCTGAACTGCTTGGCGAGTTCACGGAACTTTCCCTGGACATCCGATGCGTCTTTGAGCTCTTTTTCGTAGTCTAAAATGATGAAATATGACTTTTTTTAAACAGAAATCTTGCTCCAACTACAGTAGTTGAACTACTAACTTCTCAAAATATTGATCGCATCCTCCTTGGATCGTGTGATACGATCCGAACGCCACGACGATGGATTACGACTTCCTTCGTGCTTCACCAGAAGATGAAGACATTGGACTTGAGTCAGCTCGGATCCTTTTCCGAACGCCGTATGCTCCGGTCGTTCCCATTGGGATTGACCGGTAGCCGTGTTGAAGTAGTAGACTCGGTCTGGAATTTTTTTTTGATAAAAAAATCGCATAAACYTTTTTTCAACTTTCCGACATTTCATCGCTTTTTTCTTTTTTATTAATCAAAAACTGTTAAAAACCATCAAAAATTATCAAAAAATCGATAAAATTCCTACAGTAATACTTTGAAGGCGCAGCCTTCAGGAGGAGCATGGGTTTCGACACGACATTCGACTTTTTAATTTATTTTTTTTTCAATTTTTCTCTTTTTTTTCTTACCATTGGTGCGACTCTGGCGCTTCTCCCATCCTGGTGGCAGCGAGTTGTCGGACATTCTGAAATTTTTCTTTAAATTTTAAATTAAAAATTTTTCCGAAAATATAAATCGATCTAACAAGTTCCAAATATCTAGATTCTGGTTAATCAAATAATTTATGGAAAGACAATTTTCAAATTATGCATGCAATTTATAAAAAAACCTCGTAAAAAAAGAATTCTGGCAAATCAGAGGAAGAAAAGCTACGAAGAAGGACCGGTATGAGGGAGAAAAATGCAATTCTTACACACAAAAAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATGAAGACATTGGACTTGAG</pcr_primer_p1>
		<pcr_primer_p2>ACTGTAGGAATTTTATCGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGATGAAGACATTGGACTTGAGTCAGCTCGGATCCTTTTCCGAACGCCGTATGCTCCGGTCGTTCCCATTGGGATTGACCGGTAGCCGTGTTGAAGTAGTAGACTCGGTCTGGAATTTTTTTTTGATAAAAAAATCGCATAAACTTTTTTTCAACTTTCCGACATTTCATCGCTTTTTTCTTTTTTATTAATCAAAAACTGTTAAAAACCATCAAAAATTATCAAAAAATCGATAAAATTCCTACAGT</canonical_amplicon>
		<polymorphic_amplicon>AGATGAAGACATTGGACTTGAGTCAGCTCGGATCCTTTTCCGAACGCCGTATGCTCCGGTCGTTCCCATTGGGATTGACCGGTAGCCGTGTTGAAGTAGTAGACTCGGTCTGGAATTTTTTTTTGATAAAAAAATCGCATAAACYTTTTTTCAACTTTCCGACATTTCATCGCTTTTTTCTTTTTTATTAATCAAAAACTGTTAAAAACCATCAAAAATTATCAAAAAATCGATAAAATTCCTACAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5679</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>542843</contig_pos>
        <strand></strand>
        <context>TAATCAAAAA[C/T]YGTTAAAAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCAACTTTCCGACATTTCATCGCTTTTTTCTTTTTTATTAATCAAAAA</left_flank>
        <right_flank>TGTTAAAAACCATCAAAAATTATCAAAAAATCGATAAAATTCCTACAGTA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATGAGAATTCAGAAGATAAAAAAAAACGTACTCCAAGATCTCCTCCACGCTTCGCTGAGCTGCAATCGCTGAACTGCTTGGCGAGTTCACGGAACTTTCCCTGGACATCCGATGCGTCTTTGAGCTCTTTTTCGTAGTCTAAAATGATGAAATATGACTTTTTTTAAACAGAAATCTTGCTCCAACTACAGTAGTTGAACTACTAACTTCTCAAAATATTGATCGCATCCTCCTTGGATCGTGTGATACGATCCGAACGCCACGACGATGGATTACGACTTCCTTCGTGCTTCACCAGAAGATGAAGACATTGGACTTGAGTCAGCTCGGATCCTTTTCCGAACGCCGTATGCTCCGGTCGTTCCCATTGGGATTGACCGGTAGCCGTGTTGAAGTAGTAGACTCGGTCTGGAATTTTTTTTTGATAAAAAAATCGCATAAACTTTTTTTCAACTTTCCGACATTTCATCGCTTTTTTCTTTTTTATTAATCAAAAACTGTTAAAAACCATCAAAAATTATCAAAAAATCGATAAAATTCCTACAGTAATACTTTGAAGGCGCAGCCTTCAGGAGGAGCATGGGTTTCGACACGACATTCGACTTTTTAATTTATTTTTTTTTCAATTTTTCTCTTTTTTTTCTTACCATTGGTGCGACTCTGGCGCTTCTCCCATCCTGGTGGCAGCGAGTTGTCGGACATTCTGAAATTTTTCTTTAAATTTTAAATTAAAAATTTTTCCGAAAATATAAATCGATCTAACAAGTTCCAAATATCTAGATTCTGGTTAATCAAATAATTTATGGAAAGACAATTTTCAAATTATGCATGCAATTTATAAAAAAACCTCGTAAAAAAAGAATTCTGGCAAATCAGAGGAAGAAAAGCTACGAAGAAGGACCGGTATGAGGGAGAAAAATGCAATTCTTACACACAAAAAAAAGGAAATTAACAATAAATTATGGAATATTGGTGCCATTGACTCTTGTACAACACTC</canonical>
            <polymorphic>TTATGAGAATTCAGAAGATAAAAAAAAACGTACTCCAAGATCTCCTCCACGCTTCGCTGAGCTGCAATCGCTGAACTGCTTGGCGAGTTCACGGAACTTTCCCTGGACATCCGATGCGTCTTTGAGCTCTTTTTCGTAGTCTAAAATGATGAAATATGACTTTTTTTAAACAGAAATCTTGCTCCAACTACAGTAGTTGAACTACTAACTTCTCAAAATATTGATCGCATCCTCCTTGGATCGTGTGATACGATCCGAACGCCACGACGATGGATTACGACTTCCTTCGTGCTTCACCAGAAGATGAAGACATTGGACTTGAGTCAGCTCGGATCCTTTTCCGAACGCCGTATGCTCCGGTCGTTCCCATTGGGATTGACCGGTAGCCGTGTTGAAGTAGTAGACTCGGTCTGGAATTTTTTTTTGATAAAAAAATCGCATAAACTTTTTTTCAACTTTCCGACATTTCATCGCTTTTTTCTTTTTTATTAATCAAAAAYTGTTAAAAACCATCAAAAATTATCAAAAAATCGATAAAATTCCTACAGTAATACTTTGAAGGCGCAGCCTTCAGGAGGAGCATGGGTTTCGACACGACATTCGACTTTTTAATTTATTTTTTTTTCAATTTTTCTCTTTTTTTTCTTACCATTGGTGCGACTCTGGCGCTTCTCCCATCCTGGTGGCAGCGAGTTGTCGGACATTCTGAAATTTTTCTTTAAATTTTAAATTAAAAATTTTTCCGAAAATATAAATCGATCTAACAAGTTCCAAATATCTAGATTCTGGTTAATCAAATAATTTATGGAAAGACAATTTTCAAATTATGCATGCAATTTATAAAAAAACCTCGTAAAAAAAGAATTCTGGCAAATCAGAGGAAGAAAAGCTACGAAGAAGGACCGGTATGAGGGAGAAAAATGCAATTCTTACACACAAAAAAAAGGAAATTAACAATAAATTATGGAATATTGGTGCCATTGACTCTTGTACAACACTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>453 309 192 46</canonical_bands>
                <polymorphic_bands>453 355 192</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCAACTTTCCGACATT</pcr_primer_p1>
		<pcr_primer_p2>GGAACTTGTTAGATCGATTTATATT</pcr_primer_p2>
		<pcr_amplicon_size>325</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCAACTTTCCGACATTTCATCGCTTTTTTCTTTTTTATTAATCAAAAACTGTTAAAAACCATCAAAAATTATCAAAAAATCGATAAAATTCCTACAGTAATACTTTGAAGGCGCAGCCTTCAGGAGGAGCATGGGTTTCGACACGACATTCGACTTTTTAATTTATTTTTTTTTCAATTTTTCTCTTTTTTTTCTTACCATTGGTGCGACTCTGGCGCTTCTCCCATCCTGGTGGCAGCGAGTTGTCGGACATTCTGAAATTTTTCTTTAAATTTTAAATTAAAAATTTTTCCGAAAATATAAATCGATCTAACAAGTTCC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCAACTTTCCGACATTTCATCGCTTTTTTCTTTTTTATTAATCAAAAAYTGTTAAAAACCATCAAAAATTATCAAAAAATCGATAAAATTCCTACAGTAATACTTTGAAGGCGCAGCCTTCAGGAGGAGCATGGGTTTCGACACGACATTCGACTTTTTAATTTATTTTTTTTTCAATTTTTCTCTTTTTTTTCTTACCATTGGTGCGACTCTGGCGCTTCTCCCATCCTGGTGGCAGCGAGTTGTCGGACATTCTGAAATTTTTCTTTAAATTTTAAATTAAAAATTTTTCCGAAAATATAAATCGATCTAACAAGTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5680</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>542844</contig_pos>
        <strand></strand>
        <context>AATCAAAAAY[T/C]GTTAAAAACC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCAACTTTCCGACATTTCATCGCTTTTTTCTTTTTTATTAATCAAAAAC</left_flank>
        <right_flank>GTTAAAAACCATCAAAAATTATCAAAAAATCGATAAAATTCCTACAGTAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGAGAATTCAGAAGATAAAAAAAAACGTACTCCAAGATCTCCTCCACGCTTCGCTGAGCTGCAATCGCTGAACTGCTTGGCGAGTTCACGGAACTTTCCCTGGACATCCGATGCGTCTTTGAGCTCTTTTTCGTAGTCTAAAATGATGAAATATGACTTTTTTTAAACAGAAATCTTGCTCCAACTACAGTAGTTGAACTACTAACTTCTCAAAATATTGATCGCATCCTCCTTGGATCGTGTGATACGATCCGAACGCCACGACGATGGATTACGACTTCCTTCGTGCTTCACCAGAAGATGAAGACATTGGACTTGAGTCAGCTCGGATCCTTTTCCGAACGCCGTATGCTCCGGTCGTTCCCATTGGGATTGACCGGTAGCCGTGTTGAAGTAGTAGACTCGGTCTGGAATTTTTTTTTGATAAAAAAATCGCATAAACTTTTTTTCAACTTTCCGACATTTCATCGCTTTTTTCTTTTTTATTAATCAAAAACTGTTAAAAACCATCAAAAATTATCAAAAAATCGATAAAATTCCTACAGTAATACTTTGAAGGCGCAGCCTTCAGGAGGAGCATGGGTTTCGACACGACATTCGACTTTTTAATTTATTTTTTTTTCAATTTTTCTCTTTTTTTTCTTACCATTGGTGCGACTCTGGCGCTTCTCCCATCCTGGTGGCAGCGAGTTGTCGGACATTCTGAAATTTTTCTTTAAATTTTAAATTAAAAATTTTTCCGAAAATATAAATCGATCTAACAAGTTCCAAATATCTAGATTCTGGTTAATCAAATAATTTATGGAAAGACAATTTTCAAATTATGCATGCAATTTATAAAAAAACCTCGTAAAAAAAGAATTCTGGCAAATCAGAGGAAGAAAAGCTACGAAGAAGGACCGGTATGAGGGAGAAAAATGCAATTCTTACACACAAAAAAAAGGAAATTAACAATAAATTATGGAATATTGGTGCCATTGACTCTTGTACAACACTCG</canonical>
            <polymorphic>TATGAGAATTCAGAAGATAAAAAAAAACGTACTCCAAGATCTCCTCCACGCTTCGCTGAGCTGCAATCGCTGAACTGCTTGGCGAGTTCACGGAACTTTCCCTGGACATCCGATGCGTCTTTGAGCTCTTTTTCGTAGTCTAAAATGATGAAATATGACTTTTTTTAAACAGAAATCTTGCTCCAACTACAGTAGTTGAACTACTAACTTCTCAAAATATTGATCGCATCCTCCTTGGATCGTGTGATACGATCCGAACGCCACGACGATGGATTACGACTTCCTTCGTGCTTCACCAGAAGATGAAGACATTGGACTTGAGTCAGCTCGGATCCTTTTCCGAACGCCGTATGCTCCGGTCGTTCCCATTGGGATTGACCGGTAGCCGTGTTGAAGTAGTAGACTCGGTCTGGAATTTTTTTTTGATAAAAAAATCGCATAAACTTTTTTTCAACTTTCCGACATTTCATCGCTTTTTTCTTTTTTATTAATCAAAAACYGTTAAAAACCATCAAAAATTATCAAAAAATCGATAAAATTCCTACAGTAATACTTTGAAGGCGCAGCCTTCAGGAGGAGCATGGGTTTCGACACGACATTCGACTTTTTAATTTATTTTTTTTTCAATTTTTCTCTTTTTTTTCTTACCATTGGTGCGACTCTGGCGCTTCTCCCATCCTGGTGGCAGCGAGTTGTCGGACATTCTGAAATTTTTCTTTAAATTTTAAATTAAAAATTTTTCCGAAAATATAAATCGATCTAACAAGTTCCAAATATCTAGATTCTGGTTAATCAAATAATTTATGGAAAGACAATTTTCAAATTATGCATGCAATTTATAAAAAAACCTCGTAAAAAAAGAATTCTGGCAAATCAGAGGAAGAAAAGCTACGAAGAAGGACCGGTATGAGGGAGAAAAATGCAATTCTTACACACAAAAAAAAGGAAATTAACAATAAATTATGGAATATTGGTGCCATTGACTCTTGTACAACACTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAACTTTCCGACATTTCAT</pcr_primer_p1>
		<pcr_primer_p2>GGAACTTGTTAGATCGATTTATATT</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>TCAACTTTCCGACATTTCATCGCTTTTTTCTTTTTTATTAATCAAAAACTGTTAAAAACCATCAAAAATTATCAAAAAATCGATAAAATTCCTACAGTAATACTTTGAAGGCGCAGCCTTCAGGAGGAGCATGGGTTTCGACACGACATTCGACTTTTTAATTTATTTTTTTTTCAATTTTTCTCTTTTTTTTCTTACCATTGGTGCGACTCTGGCGCTTCTCCCATCCTGGTGGCAGCGAGTTGTCGGACATTCTGAAATTTTTCTTTAAATTTTAAATTAAAAATTTTTCCGAAAATATAAATCGATCTAACAAGTTCC</canonical_amplicon>
		<polymorphic_amplicon>TCAACTTTCCGACATTTCATCGCTTTTTTCTTTTTTATTAATCAAAAACYGTTAAAAACCATCAAAAATTATCAAAAAATCGATAAAATTCCTACAGTAATACTTTGAAGGCGCAGCCTTCAGGAGGAGCATGGGTTTCGACACGACATTCGACTTTTTAATTTATTTTTTTTTCAATTTTTCTCTTTTTTTTCTTACCATTGGTGCGACTCTGGCGCTTCTCCCATCCTGGTGGCAGCGAGTTGTCGGACATTCTGAAATTTTTCTTTAAATTTTAAATTAAAAATTTTTCCGAAAATATAAATCGATCTAACAAGTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5682</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>559106</contig_pos>
        <strand>+</strand>
        <context>gaatAACATT[A/G]WAAAAAAACA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATT</left_flank>
        <right_flank>TAAAAAAACATTGCTATGAATATTTTCCAGCAAACAATCTGTTTACTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCCCCTCCAAGAGGATTATATGGCAATAGATTAGGAGTTGTAAGTTATAACACATTGAATTTTGCACGTTTTTTGTTTGTTGACAGTTGAGAAAAATTCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACAATCTGTTTACTTTATCAGGTGTTAACCAAATAATATCGAAACTGCAAAATTCAAATATTTGAAGAATTTTTTATATGCTGAGAAATTCAGTTTTATTTAGAAATATTGGTGGTTAGTGGATTACTGTAGTTTTGAAAAAAAACTTTAAATTTAAAATTGTGATTCAAACTTCTCCATCGATCGGAAATTTCGATTTTTGAATTTCCGAGTTTTCAAAAACTATGAAACCTGTAATAGAAAGACCCCTAATTTTTTACTTCGGGCTAATTTATCTCGGTTCTTGTCAGAGATATTGAAAAGTTGTCAACTGATAAATTTTTAATCATAATATCAAAAATGTTTTGTCAGTTGACCACTTTTTTATATCTCTTATAGAAATTGAGATAATTGAGCTCAAACTTGACAGTATGGGTGCCCTTCTATTAAAGGTTTTACAGTATTATTTGAAAACTCCAAAAGTGTAC</canonical>
            <polymorphic>TCTCCCCTCCAAGAGGATTATATGGCAATAGATTAGGAGTTGTAAGTTATAACACATTGAATTTTGCACGTTTTTTGTTTGTTGACAGTTGAGAAAAATTCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTRTAAAAAAACATTGCTATGAATATTTTCCAGCAAACAATCTGTTTACTTTATCAGGTGTTAACCAAATAATATCGAAACTGCAAAATTCAAATATTTGAAGAATTTTTTATATGCTGAGAAATTCAGTTTTATTTAGAAATATTGGTGGTTAGTGGATTACTGTAGTTTTGAAAAAAAACTTTAAATTTAAAATTGTGATTCAAACTTCTCCATCGATCGGAAATTTCGATTTTTGAATTTCCGAGTTTTCAAAAACTATGAAACCTGTAATAGAAAGACCCCTAATTTTTTACTTCGGGCTAATTTATCTCGGTTCTTGTCAGAGATATTGAAAAGTTGTCAACTGATAAATTTTTAATCATAATATCAAAAATGTTTTGTCAGTTGACCACTTTTTTATATCTCTTATAGAAATTGAGATAATTGAGCTCAAACTTGACAGTATGGGTGCCCTTCTATTAAAGGTTTTACAGTATTATTTGAAAACTCCAAAAGTGTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>312 181 170 127 122 61 21 6</canonical_bands>
                <polymorphic_bands>351 312 127 122 61 21 6</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>170 168 123 121 104 90 58 41 24 21 20 19 18 17 6</canonical_bands>
                <polymorphic_bands>228 168 123 121 104 90 41 24 21 20 19 18 17 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTGGGATACTGTATTTGTGTT</pcr_primer_p1>
		<pcr_primer_p2>ACACCTGATAAAGTAAACAGATTG</pcr_primer_p2>
		<pcr_amplicon_size>460</pcr_amplicon_size>
		<canonical_amplicon>TTCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACAATCTGTTTACTTTATCAGGTGT</canonical_amplicon>
		<polymorphic_amplicon>TTCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTRTAAAAAAACATTGCTATGAATATTTTCCAGCAAACAATCTGTTTACTTTATCAGGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5683</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>559107</contig_pos>
        <strand>+</strand>
        <context>aatAACATTR[A/T]AAAAAAACAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTT</left_flank>
        <right_flank>AAAAAAACATTGCTATGAATATTTTCCAGCAAACAATCTGTTTACTTTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCCCTCCAAGAGGATTATATGGCAATAGATTAGGAGTTGTAAGTTATAACACATTGAATTTTGCACGTTTTTTGTTTGTTGACAGTTGAGAAAAATTCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACAATCTGTTTACTTTATCAGGTGTTAACCAAATAATATCGAAACTGCAAAATTCAAATATTTGAAGAATTTTTTATATGCTGAGAAATTCAGTTTTATTTAGAAATATTGGTGGTTAGTGGATTACTGTAGTTTTGAAAAAAAACTTTAAATTTAAAATTGTGATTCAAACTTCTCCATCGATCGGAAATTTCGATTTTTGAATTTCCGAGTTTTCAAAAACTATGAAACCTGTAATAGAAAGACCCCTAATTTTTTACTTCGGGCTAATTTATCTCGGTTCTTGTCAGAGATATTGAAAAGTTGTCAACTGATAAATTTTTAATCATAATATCAAAAATGTTTTGTCAGTTGACCACTTTTTTATATCTCTTATAGAAATTGAGATAATTGAGCTCAAACTTGACAGTATGGGTGCCCTTCTATTAAAGGTTTTACAGTATTATTTGAAAACTCCAAAAGTGTACT</canonical>
            <polymorphic>CTCCCCTCCAAGAGGATTATATGGCAATAGATTAGGAGTTGTAAGTTATAACACATTGAATTTTGCACGTTTTTTGTTTGTTGACAGTTGAGAAAAATTCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTWAAAAAAACATTGCTATGAATATTTTCCAGCAAACAATCTGTTTACTTTATCAGGTGTTAACCAAATAATATCGAAACTGCAAAATTCAAATATTTGAAGAATTTTTTATATGCTGAGAAATTCAGTTTTATTTAGAAATATTGGTGGTTAGTGGATTACTGTAGTTTTGAAAAAAAACTTTAAATTTAAAATTGTGATTCAAACTTCTCCATCGATCGGAAATTTCGATTTTTGAATTTCCGAGTTTTCAAAAACTATGAAACCTGTAATAGAAAGACCCCTAATTTTTTACTTCGGGCTAATTTATCTCGGTTCTTGTCAGAGATATTGAAAAGTTGTCAACTGATAAATTTTTAATCATAATATCAAAAATGTTTTGTCAGTTGACCACTTTTTTATATCTCTTATAGAAATTGAGATAATTGAGCTCAAACTTGACAGTATGGGTGCCCTTCTATTAAAGGTTTTACAGTATTATTTGAAAACTCCAAAAGTGTACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>313 181 170 127 121 61 21 6</canonical_bands>
                <polymorphic_bands>351 313 127 121 61 21 6</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>170 168 123 120 104 90 58 42 24 21 20 19 18 17 6</canonical_bands>
                <polymorphic_bands>228 168 123 120 104 90 42 24 21 20 19 18 17 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTGGGATACTGTATTTGTGTT</pcr_primer_p1>
		<pcr_primer_p2>ACACCTGATAAAGTAAACAGATTG</pcr_primer_p2>
		<pcr_amplicon_size>460</pcr_amplicon_size>
		<canonical_amplicon>TTCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACAATCTGTTTACTTTATCAGGTGT</canonical_amplicon>
		<polymorphic_amplicon>TTCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTWAAAAAAACATTGCTATGAATATTTTCCAGCAAACAATCTGTTTACTTTATCAGGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5685</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>560348</contig_pos>
        <strand>+</strand>
        <context>TTGGTGAGTT[C/T]TCCTTAATGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATGTATTGTGTGCGAATTGTATTGGTCAGAAAAATGTGATTGGTGAGTT</left_flank>
        <right_flank>TCCTTAATGTTTTTAGAGGGACATAAGGCTCTGGAATTGGAAAAATGAGT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATTTTTTCCAGAAAAAAACTATACATTTTTTGGATTCAAATTCCAAAAAAATGTACGTTGGGCGAGCCCTTCAGAAGGCCAGTCTACTGACGGACCTGGATAAGGCAATACCCTCAACATCATCATTTTTGGATTGGATTTGTAAGTTTTGAAATTTCGAATTACCGTAAAACCTGCATAGGGTCCCCTAGTTTGAGCTCAATTATCTCGGCTTCTATAAGAGATATCACAAATGTGTCAACTGATAAAATGTTTTTCATATTATCACCAACATTTTATTAGTTAACACATTTTTGATATCTATTCTCGGAACCGAGATAATTGAGCTCAAATCGCACGGACAGGGTAGGTTTCTATTAGAGAAAATACGGTAATTAGAATACCTAATTAACGCTTTTTTTAGTATCACCACCATATGAAAATGAGACTGGAGAACACAATTCGACAGATGTATTGTGTGCGAATTGTATTGGTCAGAAAAATGTGATTGGTGAGTTCTCCTTAATGTTTTTAGAGGGACATAAGGCTCTGGAATTGGAAAAATGAGTTTTTTCACCCAACTGTCAAATTTAAGGTTAATTATCTCGGTTCCTATGATATATATTAAAAATCTGTCAGCTGATAAATTGTTAATCATAATATCATCAGTATTTTATTAATTGACAAAGTTTTGATATCTTTCACAGAAATCTAGATAATTGAGCTCAAAATTGACGGTTTCGGTGAGCTGCATTAGGGGAAATACGGTATCTGAAATTTTGAAAATTTCAGCATGCGTTCGTTCAAGTGTTATAGCTGTTCTGGGTCTGTGTACGGCTGCAATGTGCATGGCACGAATCGCAAAACTCCATGCCACGTCACAGTCACAATTGATGCTCCTTCTCTATTATATTCTGGCAGTTCATTGTTTTGGAGGGTGAGTCAACGGTTTGAGCTGATTATCTCGGTTCCTAAAAGAGCTATCATAAATTAGTCAACTGATAAAATATGAATCATAT</canonical>
            <polymorphic>CTATTTTTTCCAGAAAAAAACTATACATTTTTTGGATTCAAATTCCAAAAAAATGTACGTTGGGCGAGCCCTTCAGAAGGCCAGTCTACTGACGGACCTGGATAAGGCAATACCCTCAACATCATCATTTTTGGATTGGATTTGTAAGTTTTGAAATTTCGAATTACCGTAAAACCTGCATAGGGTCCCCTAGTTTGAGCTCAATTATCTCGGCTTCTATAAGAGATATCACAAATGTGTCAACTGATAAAATGTTTTTCATATTATCACCAACATTTTATTAGTTAACACATTTTTGATATCTATTCTCGGAACCGAGATAATTGAGCTCAAATCGCACGGACAGGGTAGGTTTCTATTAGAGAAAATACGGTAATTAGAATACCTAATTAACGCTTTTTTTAGTATCACCACCATATGAAAATGAGACTGGAGAACACAATTCGACAGATGTATTGTGTGCGAATTGTATTGGTCAGAAAAATGTGATTGGTGAGTTYTCCTTAATGTTTTTAGAGGGACATAAGGCTCTGGAATTGGAAAAATGAGTTTTTTCACCCAACTGTCAAATTTAAGGTTAATTATCTCGGTTCCTATGATATATATTAAAAATCTGTCAGCTGATAAATTGTTAATCATAATATCATCAGTATTTTATTAATTGACAAAGTTTTGATATCTTTCACAGAAATCTAGATAATTGAGCTCAAAATTGACGGTTTCGGTGAGCTGCATTAGGGGAAATACGGTATCTGAAATTTTGAAAATTTCAGCATGCGTTCGTTCAAGTGTTATAGCTGTTCTGGGTCTGTGTACGGCTGCAATGTGCATGGCACGAATCGCAAAACTCCATGCCACGTCACAGTCACAATTGATGCTCCTTCTCTATTATATTCTGGCAGTTCATTGTTTTGGAGGGTGAGTCAACGGTTTGAGCTGATTATCTCGGTTCCTAAAAGAGCTATCATAAATTAGTCAACTGATAAAATATGAATCATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCGACAGATGTATTGTGTG</pcr_primer_p1>
		<pcr_primer_p2>CCAGAACAGCTATAACACTTGA</pcr_primer_p2>
		<pcr_amplicon_size>366</pcr_amplicon_size>
		<canonical_amplicon>AATTCGACAGATGTATTGTGTGCGAATTGTATTGGTCAGAAAAATGTGATTGGTGAGTTCTCCTTAATGTTTTTAGAGGGACATAAGGCTCTGGAATTGGAAAAATGAGTTTTTTCACCCAACTGTCAAATTTAAGGTTAATTATCTCGGTTCCTATGATATATATTAAAAATCTGTCAGCTGATAAATTGTTAATCATAATATCATCAGTATTTTATTAATTGACAAAGTTTTGATATCTTTCACAGAAATCTAGATAATTGAGCTCAAAATTGACGGTTTCGGTGAGCTGCATTAGGGGAAATACGGTATCTGAAATTTTGAAAATTTCAGCATGCGTTCGTTCAAGTGTTATAGCTGTTCTGG</canonical_amplicon>
		<polymorphic_amplicon>AATTCGACAGATGTATTGTGTGCGAATTGTATTGGTCAGAAAAATGTGATTGGTGAGTTYTCCTTAATGTTTTTAGAGGGACATAAGGCTCTGGAATTGGAAAAATGAGTTTTTTCACCCAACTGTCAAATTTAAGGTTAATTATCTCGGTTCCTATGATATATATTAAAAATCTGTCAGCTGATAAATTGTTAATCATAATATCATCAGTATTTTATTAATTGACAAAGTTTTGATATCTTTCACAGAAATCTAGATAATTGAGCTCAAAATTGACGGTTTCGGTGAGCTGCATTAGGGGAAATACGGTATCTGAAATTTTGAAAATTTCAGCATGCGTTCGTTCAAGTGTTATAGCTGTTCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5686</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>560312</contig_pos>
        <strand>+</strand>
        <context>TATTGTGTGC[A/G]AATTGTATTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCATATGAAAATGAGACTGGAGAACACAATTCGACAGATGTATTGTGTGC</left_flank>
        <right_flank>AATTGTATTGGTCAGAAAAATGTGATTGGTGAGTTCTCCTTAATGTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCATCGATTTTGTGAAGGTTTCCTAATAAATTTTTCTATTTTTTCCAGAAAAAAACTATACATTTTTTGGATTCAAATTCCAAAAAAATGTACGTTGGGCGAGCCCTTCAGAAGGCCAGTCTACTGACGGACCTGGATAAGGCAATACCCTCAACATCATCATTTTTGGATTGGATTTGTAAGTTTTGAAATTTCGAATTACCGTAAAACCTGCATAGGGTCCCCTAGTTTGAGCTCAATTATCTCGGCTTCTATAAGAGATATCACAAATGTGTCAACTGATAAAATGTTTTTCATATTATCACCAACATTTTATTAGTTAACACATTTTTGATATCTATTCTCGGAACCGAGATAATTGAGCTCAAATCGCACGGACAGGGTAGGTTTCTATTAGAGAAAATACGGTAATTAGAATACCTAATTAACGCTTTTTTTAGTATCACCACCATATGAAAATGAGACTGGAGAACACAATTCGACAGATGTATTGTGTGCGAATTGTATTGGTCAGAAAAATGTGATTGGTGAGTTCTCCTTAATGTTTTTAGAGGGACATAAGGCTCTGGAATTGGAAAAATGAGTTTTTTCACCCAACTGTCAAATTTAAGGTTAATTATCTCGGTTCCTATGATATATATTAAAAATCTGTCAGCTGATAAATTGTTAATCATAATATCATCAGTATTTTATTAATTGACAAAGTTTTGATATCTTTCACAGAAATCTAGATAATTGAGCTCAAAATTGACGGTTTCGGTGAGCTGCATTAGGGGAAATACGGTATCTGAAATTTTGAAAATTTCAGCATGCGTTCGTTCAAGTGTTATAGCTGTTCTGGGTCTGTGTACGGCTGCAATGTGCATGGCACGAATCGCAAAACTCCATGCCACGTCACAGTCACAATTGATGCTCCTTCTCTATTATATTCTGGCAGTTCATTGTTTTGGAGGGTGAGTCAACGGTTTGAGCTGATTATCTCGGTTCCTAAAAGAGCTA</canonical>
            <polymorphic>GTCATCGATTTTGTGAAGGTTTCCTAATAAATTTTTCTATTTTTTCCAGAAAAAAACTATACATTTTTTGGATTCAAATTCCAAAAAAATGTACGTTGGGCGAGCCCTTCAGAAGGCCAGTCTACTGACGGACCTGGATAAGGCAATACCCTCAACATCATCATTTTTGGATTGGATTTGTAAGTTTTGAAATTTCGAATTACCGTAAAACCTGCATAGGGTCCCCTAGTTTGAGCTCAATTATCTCGGCTTCTATAAGAGATATCACAAATGTGTCAACTGATAAAATGTTTTTCATATTATCACCAACATTTTATTAGTTAACACATTTTTGATATCTATTCTCGGAACCGAGATAATTGAGCTCAAATCGCACGGACAGGGTAGGTTTCTATTAGAGAAAATACGGTAATTAGAATACCTAATTAACGCTTTTTTTAGTATCACCACCATATGAAAATGAGACTGGAGAACACAATTCGACAGATGTATTGTGTGCRAATTGTATTGGTCAGAAAAATGTGATTGGTGAGTTCTCCTTAATGTTTTTAGAGGGACATAAGGCTCTGGAATTGGAAAAATGAGTTTTTTCACCCAACTGTCAAATTTAAGGTTAATTATCTCGGTTCCTATGATATATATTAAAAATCTGTCAGCTGATAAATTGTTAATCATAATATCATCAGTATTTTATTAATTGACAAAGTTTTGATATCTTTCACAGAAATCTAGATAATTGAGCTCAAAATTGACGGTTTCGGTGAGCTGCATTAGGGGAAATACGGTATCTGAAATTTTGAAAATTTCAGCATGCGTTCGTTCAAGTGTTATAGCTGTTCTGGGTCTGTGTACGGCTGCAATGTGCATGGCACGAATCGCAAAACTCCATGCCACGTCACAGTCACAATTGATGCTCCTTCTCTATTATATTCTGGCAGTTCATTGTTTTGGAGGGTGAGTCAACGGTTTGAGCTGATTATCTCGGTTCCTAAAAGAGCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGAATACCTAATTAACGCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCATTTTTCCAATTCCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>172</pcr_amplicon_size>
		<canonical_amplicon>TTAGAATACCTAATTAACGCTTTTTTTAGTATCACCACCATATGAAAATGAGACTGGAGAACACAATTCGACAGATGTATTGTGTGCGAATTGTATTGGTCAGAAAAATGTGATTGGTGAGTTCTCCTTAATGTTTTTAGAGGGACATAAGGCTCTGGAATTGGAAAAATGA</canonical_amplicon>
		<polymorphic_amplicon>TTAGAATACCTAATTAACGCTTTTTTTAGTATCACCACCATATGAAAATGAGACTGGAGAACACAATTCGACAGATGTATTGTGTGCRAATTGTATTGGTCAGAAAAATGTGATTGGTGAGTTCTCCTTAATGTTTTTAGAGGGACATAAGGCTCTGGAATTGGAAAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5706</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>592016</contig_pos>
        <strand></strand>
        <context>tcatatcgat[T/C]cttcgctttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCAGATTAAAACTAGTTACATATTTGAATGAAACACATTTTCATATCGAT</left_flank>
        <right_flank>CTTCGCTTTTAGTCAAAGTTACAGCCAGTCAAAGGAAAAAAATAAATAGG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATCACTTTTCTGATAAGCTTGGCCTGAGCTTTAAAATGAGTATAAACATGACCTAATTTCCAGAGTTTTGAATTCCGACTCCTCTCATGCGCCTTTAAAGTCGAAAATCTAAAAATTGAGAAACCCTAGCAATGTTTATACTTATTTTGAAGCTCGCAACAAGCCAAAAAAAAATATTTTTAAAGTTTAAAATTTGGTCGAAAACTGACTGATTTCTTTATCATACAAAAGATTGGCTTTTCATACAAAAATCGAAATCTTCAATCTATTGATCTACCCTGTTAGAAAATTTGAAAATCCTGGTCTAATTTCAGATTCCCACGAGCTGGAAGTGCCTACACCTACACTTACATTGGATTTGGAGAACTCTGGGCGTTTATTGTTGGCTGGACCATCCCACTTGAGTACATGATTGGGAATGCTGGTGAGTTCTTTTTTTCAAATCTTTCAGATTAAAACTAGTTACATATTTGAATGAAACACATTTTCATATCGATTCTTCGCTTTTAGTCAAAGTTACAGCCAGTCAAAGGAAAAAAATAAATAGGCTCCGCCCCTTTTTACCTTTACCACATATTTTCAGCTGTTGCTCGCTCCTGGTCCGCATATTTCGATAATCTTCTGGACAATTATGTGAAAAATACAACGATTGGATTGGTGGGAGAGATGGGGGAGGTAAGAAATTATCTGAAAATGACCAAAAAATGAAAAATTTGTAGCCCGGCGGATTCTTCTCTACATATCCAGATGTTCTATCATTCATTTTGATTTGTCTGTGTGCCATTGTGATTGGAATTGGATCCAAAGTTTCAGCACATGTGAATACAAGTTTTGTGGTCTTGAATATTATTGTAAGTTTTATAGATCTACCGTTTTCAGTTGATTCTCGGTTTTTAAAAAATCATTTTCATGAGCCTGGAACTCGACTGTCAAGTTTACGATCACTTTGAAAATTTTGGAGGGTGTAGAACAGACCTAGATTGAAAACTTTGCATTTT</canonical>
            <polymorphic>ATATCACTTTTCTGATAAGCTTGGCCTGAGCTTTAAAATGAGTATAAACATGACCTAATTTCCAGAGTTTTGAATTCCGACTCCTCTCATGCGCCTTTAAAGTCGAAAATCTAAAAATTGAGAAACCCTAGCAATGTTTATACTTATTTTGAAGCTCGCAACAAGCCAAAAAAAAATATTTTTAAAGTTTAAAATTTGGTCGAAAACTGACTGATTTCTTTATCATACAAAAGATTGGCTTTTCATACAAAAATCGAAATCTTCAATCTATTGATCTACCCTGTTAGAAAATTTGAAAATCCTGGTCTAATTTCAGATTCCCACGAGCTGGAAGTGCCTACACCTACACTTACATTGGATTTGGAGAACTCTGGGCGTTTATTGTTGGCTGGACCATCCCACTTGAGTACATGATTGGGAATGCTGGTGAGTTCTTTTTTTCAAATCTTTCAGATTAAAACTAGTTACATATTTGAATGAAACACATTTTCATATCGATYCTTCGCTTTTAGTCAAAGTTACAGCCAGTCAAAGGAAAAAAATAAATAGGCTCCGCCCCTTTTTACCTTTACCACATATTTTCAGCTGTTGCTCGCTCCTGGTCCGCATATTTCGATAATCTTCTGGACAATTATGTGAAAAATACAACGATTGGATTGGTGGGAGAGATGGGGGAGGTAAGAAATTATCTGAAAATGACCAAAAAATGAAAAATTTGTAGCCCGGCGGATTCTTCTCTACATATCCAGATGTTCTATCATTCATTTTGATTTGTCTGTGTGCCATTGTGATTGGAATTGGATCCAAAGTTTCAGCACATGTGAATACAAGTTTTGTGGTCTTGAATATTATTGTAAGTTTTATAGATCTACCGTTTTCAGTTGATTCTCGGTTTTTAAAAAATCATTTTCATGAGCCTGGAACTCGACTGTCAAGTTTACGATCACTTTGAAAATTTTGGAGGGTGTAGAACAGACCTAGATTGAAAACTTTGCATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>237 232 181 155 116 79</canonical_bands>
                <polymorphic_bands>413 237 155 116 79</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>316 232 181 155 116</canonical_bands>
                <polymorphic_bands>413 316 155 116</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACACCTACACTTACATTGGATTT</pcr_primer_p1>
		<pcr_primer_p2>ACAGCTGAAAATATGTGGTAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACACCTACACTTACATTGGATTTGGAGAACTCTGGGCGTTTATTGTTGGCTGGACCATCCCACTTGAGTACATGATTGGGAATGCTGGTGAGTTCTTTTTTTCAAATCTTTCAGATTAAAACTAGTTACATATTTGAATGAAACACATTTTCATATCGATTCTTCGCTTTTAGTCAAAGTTACAGCCAGTCAAAGGAAAAAAATAAATAGGCTCCGCCCCTTTTTACCTTTACCACATATTTTCAGCTGT</canonical_amplicon>
		<polymorphic_amplicon>ACACCTACACTTACATTGGATTTGGAGAACTCTGGGCGTTTATTGTTGGCTGGACCATCCCACTTGAGTACATGATTGGGAATGCTGGTGAGTTCTTTTTTTCAAATCTTTCAGATTAAAACTAGTTACATATTTGAATGAAACACATTTTCATATCGATYCTTCGCTTTTAGTCAAAGTTACAGCCAGTCAAAGGAAAAAAATAAATAGGCTCCGCCCCTTTTTACCTTTACCACATATTTTCAGCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5707</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>592029</contig_pos>
        <strand></strand>
        <context>tcgcttttag[T/C]caaagytaca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGTTACATATTTGAATGAAACACATTTTCATATCGATTCTTCGCTTTTAG</left_flank>
        <right_flank>CAAAGTTACAGCCAGTCAAAGGAAAAAAATAAATAGGCTCCGCCCCTTTT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAAGCTTGGCCTGAGCTTTAAAATGAGTATAAACATGACCTAATTTCCAGAGTTTTGAATTCCGACTCCTCTCATGCGCCTTTAAAGTCGAAAATCTAAAAATTGAGAAACCCTAGCAATGTTTATACTTATTTTGAAGCTCGCAACAAGCCAAAAAAAAATATTTTTAAAGTTTAAAATTTGGTCGAAAACTGACTGATTTCTTTATCATACAAAAGATTGGCTTTTCATACAAAAATCGAAATCTTCAATCTATTGATCTACCCTGTTAGAAAATTTGAAAATCCTGGTCTAATTTCAGATTCCCACGAGCTGGAAGTGCCTACACCTACACTTACATTGGATTTGGAGAACTCTGGGCGTTTATTGTTGGCTGGACCATCCCACTTGAGTACATGATTGGGAATGCTGGTGAGTTCTTTTTTTCAAATCTTTCAGATTAAAACTAGTTACATATTTGAATGAAACACATTTTCATATCGATTCTTCGCTTTTAGTCAAAGTTACAGCCAGTCAAAGGAAAAAAATAAATAGGCTCCGCCCCTTTTTACCTTTACCACATATTTTCAGCTGTTGCTCGCTCCTGGTCCGCATATTTCGATAATCTTCTGGACAATTATGTGAAAAATACAACGATTGGATTGGTGGGAGAGATGGGGGAGGTAAGAAATTATCTGAAAATGACCAAAAAATGAAAAATTTGTAGCCCGGCGGATTCTTCTCTACATATCCAGATGTTCTATCATTCATTTTGATTTGTCTGTGTGCCATTGTGATTGGAATTGGATCCAAAGTTTCAGCACATGTGAATACAAGTTTTGTGGTCTTGAATATTATTGTAAGTTTTATAGATCTACCGTTTTCAGTTGATTCTCGGTTTTTAAAAAATCATTTTCATGAGCCTGGAACTCGACTGTCAAGTTTACGATCACTTTGAAAATTTTGGAGGGTGTAGAACAGACCTAGATTGAAAACTTTGCATTTTGCAATTCCTAGTT</canonical>
            <polymorphic>GATAAGCTTGGCCTGAGCTTTAAAATGAGTATAAACATGACCTAATTTCCAGAGTTTTGAATTCCGACTCCTCTCATGCGCCTTTAAAGTCGAAAATCTAAAAATTGAGAAACCCTAGCAATGTTTATACTTATTTTGAAGCTCGCAACAAGCCAAAAAAAAATATTTTTAAAGTTTAAAATTTGGTCGAAAACTGACTGATTTCTTTATCATACAAAAGATTGGCTTTTCATACAAAAATCGAAATCTTCAATCTATTGATCTACCCTGTTAGAAAATTTGAAAATCCTGGTCTAATTTCAGATTCCCACGAGCTGGAAGTGCCTACACCTACACTTACATTGGATTTGGAGAACTCTGGGCGTTTATTGTTGGCTGGACCATCCCACTTGAGTACATGATTGGGAATGCTGGTGAGTTCTTTTTTTCAAATCTTTCAGATTAAAACTAGTTACATATTTGAATGAAACACATTTTCATATCGATTCTTCGCTTTTAGYCAAAGTTACAGCCAGTCAAAGGAAAAAAATAAATAGGCTCCGCCCCTTTTTACCTTTACCACATATTTTCAGCTGTTGCTCGCTCCTGGTCCGCATATTTCGATAATCTTCTGGACAATTATGTGAAAAATACAACGATTGGATTGGTGGGAGAGATGGGGGAGGTAAGAAATTATCTGAAAATGACCAAAAAATGAAAAATTTGTAGCCCGGCGGATTCTTCTCTACATATCCAGATGTTCTATCATTCATTTTGATTTGTCTGTGTGCCATTGTGATTGGAATTGGATCCAAAGTTTCAGCACATGTGAATACAAGTTTTGTGGTCTTGAATATTATTGTAAGTTTTATAGATCTACCGTTTTCAGTTGATTCTCGGTTTTTAAAAAATCATTTTCATGAGCCTGGAACTCGACTGTCAAGTTTACGATCACTTTGAAAATTTTGGAGGGTGTAGAACAGACCTAGATTGAAAACTTTGCATTTTGCAATTCCTAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACCTACACTTACATTGGATTT</pcr_primer_p1>
		<pcr_primer_p2>ACAGCTGAAAATATGTGGTAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACACCTACACTTACATTGGATTTGGAGAACTCTGGGCGTTTATTGTTGGCTGGACCATCCCACTTGAGTACATGATTGGGAATGCTGGTGAGTTCTTTTTTTCAAATCTTTCAGATTAAAACTAGTTACATATTTGAATGAAACACATTTTCATATCGATTCTTCGCTTTTAGTCAAAGTTACAGCCAGTCAAAGGAAAAAAATAAATAGGCTCCGCCCCTTTTTACCTTTACCACATATTTTCAGCTGT</canonical_amplicon>
		<polymorphic_amplicon>ACACCTACACTTACATTGGATTTGGAGAACTCTGGGCGTTTATTGTTGGCTGGACCATCCCACTTGAGTACATGATTGGGAATGCTGGTGAGTTCTTTTTTTCAAATCTTTCAGATTAAAACTAGTTACATATTTGAATGAAACACATTTTCATATCGATTCTTCGCTTTTAGYCAAAGTTACAGCCAGTCAAAGGAAAAAAATAAATAGGCTCCGCCCCTTTTTACCTTTACCACATATTTTCAGCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5708</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>592035</contig_pos>
        <strand></strand>
        <context>ttagycaaag[T/C]tacagccagt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATATTTGAATGAAACACATTTTCATATCGATTCTTCGCTTTTAGTCAAAG</left_flank>
        <right_flank>TACAGCCAGTCAAAGGAAAAAAATAAATAGGCTCCGCCCCTTTTTACCTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTGGCCTGAGCTTTAAAATGAGTATAAACATGACCTAATTTCCAGAGTTTTGAATTCCGACTCCTCTCATGCGCCTTTAAAGTCGAAAATCTAAAAATTGAGAAACCCTAGCAATGTTTATACTTATTTTGAAGCTCGCAACAAGCCAAAAAAAAATATTTTTAAAGTTTAAAATTTGGTCGAAAACTGACTGATTTCTTTATCATACAAAAGATTGGCTTTTCATACAAAAATCGAAATCTTCAATCTATTGATCTACCCTGTTAGAAAATTTGAAAATCCTGGTCTAATTTCAGATTCCCACGAGCTGGAAGTGCCTACACCTACACTTACATTGGATTTGGAGAACTCTGGGCGTTTATTGTTGGCTGGACCATCCCACTTGAGTACATGATTGGGAATGCTGGTGAGTTCTTTTTTTCAAATCTTTCAGATTAAAACTAGTTACATATTTGAATGAAACACATTTTCATATCGATTCTTCGCTTTTAGTCAAAGTTACAGCCAGTCAAAGGAAAAAAATAAATAGGCTCCGCCCCTTTTTACCTTTACCACATATTTTCAGCTGTTGCTCGCTCCTGGTCCGCATATTTCGATAATCTTCTGGACAATTATGTGAAAAATACAACGATTGGATTGGTGGGAGAGATGGGGGAGGTAAGAAATTATCTGAAAATGACCAAAAAATGAAAAATTTGTAGCCCGGCGGATTCTTCTCTACATATCCAGATGTTCTATCATTCATTTTGATTTGTCTGTGTGCCATTGTGATTGGAATTGGATCCAAAGTTTCAGCACATGTGAATACAAGTTTTGTGGTCTTGAATATTATTGTAAGTTTTATAGATCTACCGTTTTCAGTTGATTCTCGGTTTTTAAAAAATCATTTTCATGAGCCTGGAACTCGACTGTCAAGTTTACGATCACTTTGAAAATTTTGGAGGGTGTAGAACAGACCTAGATTGAAAACTTTGCATTTTGCAATTCCTAGTTTTTCAG</canonical>
            <polymorphic>CTTGGCCTGAGCTTTAAAATGAGTATAAACATGACCTAATTTCCAGAGTTTTGAATTCCGACTCCTCTCATGCGCCTTTAAAGTCGAAAATCTAAAAATTGAGAAACCCTAGCAATGTTTATACTTATTTTGAAGCTCGCAACAAGCCAAAAAAAAATATTTTTAAAGTTTAAAATTTGGTCGAAAACTGACTGATTTCTTTATCATACAAAAGATTGGCTTTTCATACAAAAATCGAAATCTTCAATCTATTGATCTACCCTGTTAGAAAATTTGAAAATCCTGGTCTAATTTCAGATTCCCACGAGCTGGAAGTGCCTACACCTACACTTACATTGGATTTGGAGAACTCTGGGCGTTTATTGTTGGCTGGACCATCCCACTTGAGTACATGATTGGGAATGCTGGTGAGTTCTTTTTTTCAAATCTTTCAGATTAAAACTAGTTACATATTTGAATGAAACACATTTTCATATCGATTCTTCGCTTTTAGTCAAAGYTACAGCCAGTCAAAGGAAAAAAATAAATAGGCTCCGCCCCTTTTTACCTTTACCACATATTTTCAGCTGTTGCTCGCTCCTGGTCCGCATATTTCGATAATCTTCTGGACAATTATGTGAAAAATACAACGATTGGATTGGTGGGAGAGATGGGGGAGGTAAGAAATTATCTGAAAATGACCAAAAAATGAAAAATTTGTAGCCCGGCGGATTCTTCTCTACATATCCAGATGTTCTATCATTCATTTTGATTTGTCTGTGTGCCATTGTGATTGGAATTGGATCCAAAGTTTCAGCACATGTGAATACAAGTTTTGTGGTCTTGAATATTATTGTAAGTTTTATAGATCTACCGTTTTCAGTTGATTCTCGGTTTTTAAAAAATCATTTTCATGAGCCTGGAACTCGACTGTCAAGTTTACGATCACTTTGAAAATTTTGGAGGGTGTAGAACAGACCTAGATTGAAAACTTTGCATTTTGCAATTCCTAGTTTTTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 444 54</canonical_bands>
                <polymorphic_bands>556 444</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACACCTACACTTACATTGGATTT</pcr_primer_p1>
		<pcr_primer_p2>ACAGCTGAAAATATGTGGTAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACACCTACACTTACATTGGATTTGGAGAACTCTGGGCGTTTATTGTTGGCTGGACCATCCCACTTGAGTACATGATTGGGAATGCTGGTGAGTTCTTTTTTTCAAATCTTTCAGATTAAAACTAGTTACATATTTGAATGAAACACATTTTCATATCGATTCTTCGCTTTTAGTCAAAGTTACAGCCAGTCAAAGGAAAAAAATAAATAGGCTCCGCCCCTTTTTACCTTTACCACATATTTTCAGCTGT</canonical_amplicon>
		<polymorphic_amplicon>ACACCTACACTTACATTGGATTTGGAGAACTCTGGGCGTTTATTGTTGGCTGGACCATCCCACTTGAGTACATGATTGGGAATGCTGGTGAGTTCTTTTTTTCAAATCTTTCAGATTAAAACTAGTTACATATTTGAATGAAACACATTTTCATATCGATTCTTCGCTTTTAGTCAAAGYTACAGCCAGTCAAAGGAAAAAAATAAATAGGCTCCGCCCCTTTTTACCTTTACCACATATTTTCAGCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5740</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>594232</contig_pos>
        <strand>+</strand>
        <context>TCCTTCGCTA[C/T]CAATCCGCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCCTCTTTGCATATTCGTTCGTCTCCGCTTCTGTCCTTGTCCTTCGCTA</left_flank>
        <right_flank>CAATCCGCTCCGATCGACGGAGATGAAAAACGAATGGATGGTGGTGGAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGCTGGTTTTTGATATTGAGGCATTGGTGAGTTGGTTTATACGGTATCTCTTCGTACTTTAACATGTACTGTACTTTGATTCGGTACTGTGCCCTACATAAATTTAGGTCGTGAAATCGGGCCGACCAACCGAATGCCAACCCAACCTTGCTCACCGAATCCTTGCATTTGCGCGTCAATATTCCAGATTGTTTGCGTACCCAGCGCATTTACTGAATAGTGTGTCTTAAATTAAAATTCTGCGTACGCAAATGCTCTCTGTCAGGTTGACGCGAAATTGCATGAATTCGGTGGGCGCGCCGTCCGATCGGTCAGCTCGGTCGGCTGTCTGTCTACTGGGTCGGCGGTCGGTCGGCGGTCGCTGATTTTCGATCAACCGAAATAAGATCCCCAATTCTATCTCATCAAATATTGATCACTTTTACAGGTTGAATTCCTCTCAATCGGAACCCTCTTTGCATATTCGTTCGTCTCCGCTTCTGTCCTTGTCCTTCGCTATCAATCCGCTCCGATCGACGGAGATGAAAAACGAATGGATGGTGGTGGAGAATTAAGCTCATGGATTCCTGCTCGAAACTTTTGGGAATCTCTTCCATCTGGAACATCCATATCTCTAGCTGTTGCTGCATTGATAGCCTCCTTTTTCTGGCTCTCGTTCACATTTAGAACTGGTTTCTATGAAAGTTGGTATGGTCAGGTGTCGGTTGGATTCAATGGATTGTGTATAGTTTTGATAATGGCATTTATTTTGGGACATTCTCAAAATTCGTTGAAGACTAATTTCAAGGTGAGTACTCCTTCTATGGTTCTCGAATTTCTGAACATTTGAGATTTTAAATTTTTGAATATTTGAATTTGAGAACTTCTGAATCTCTCGATTTCCGCTAAAACAAAACATTTGGGCAATTGTTTCACGGCTTCAGAGTTAACTATCTTCCACGGAAGAAGTCAAAATATTTGGTCCGGACTATACATCAGAAGTTATCTTTCAGGTTCCTT</canonical>
            <polymorphic>TCGCTGGTTTTTGATATTGAGGCATTGGTGAGTTGGTTTATACGGTATCTCTTCGTACTTTAACATGTACTGTACTTTGATTCGGTACTGTGCCCTACATAAATTTAGGTCGTGAAATCGGGCCGACCAACCGAATGCCAACCCAACCTTGCTCACCGAATCCTTGCATTTGCGCGTCAATATTCCAGATTGTTTGCGTACCCAGCGCATTTACTGAATAGTGTGTCTTAAATTAAAATTCTGCGTACGCAAATGCTCTCTGTCAGGTTGACGCGAAATTGCATGAATTCGGTGGGCGCGCCGTCCGATCGGTCAGCTCGGTCGGCTGTCTGTCTACTGGGTCGGCGGTCGGTCGGCGGTCGCTGATTTTCGATCAACCGAAATAAGATCCCCAATTCTATCTCATCAAATATTGATCACTTTTACAGGTTGAATTCCTCTCAATCGGAACCCTCTTTGCATATTCGTTCGTCTCCGCTTCTGTCCTTGTCCTTCGCTAYCAATCCGCTCCGATCGACGGAGATGAAAAACGAATGGATGGTGGTGGAGAATTAAGCTCATGGATTCCTGCTCGAAACTTTTGGGAATCTCTTCCATCTGGAACATCCATATCTCTAGCTGTTGCTGCATTGATAGCCTCCTTTTTCTGGCTCTCGTTCACATTTAGAACTGGTTTCTATGAAAGTTGGTATGGTCAGGTGTCGGTTGGATTCAATGGATTGTGTATAGTTTTGATAATGGCATTTATTTTGGGACATTCTCAAAATTCGTTGAAGACTAATTTCAAGGTGAGTACTCCTTCTATGGTTCTCGAATTTCTGAACATTTGAGATTTTAAATTTTTGAATATTTGAATTTGAGAACTTCTGAATCTCTCGATTTCCGCTAAAACAAAACATTTGGGCAATTGTTTCACGGCTTCAGAGTTAACTATCTTCCACGGAAGAAGTCAAAATATTTGGTCCGGACTATACATCAGAAGTTATCTTTCAGGTTCCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACAGGTTGAATTCCTCTCAAT</pcr_primer_p1>
		<pcr_primer_p2>AGTTCTAAATGTGAACGAGAGC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TACAGGTTGAATTCCTCTCAATCGGAACCCTCTTTGCATATTCGTTCGTCTCCGCTTCTGTCCTTGTCCTTCGCTATCAATCCGCTCCGATCGACGGAGATGAAAAACGAATGGATGGTGGTGGAGAATTAAGCTCATGGATTCCTGCTCGAAACTTTTGGGAATCTCTTCCATCTGGAACATCCATATCTCTAGCTGTTGCTGCATTGATAGCCTCCTTTTTCTGGCTCTCGTTCACATTTAGAACT</canonical_amplicon>
		<polymorphic_amplicon>TACAGGTTGAATTCCTCTCAATCGGAACCCTCTTTGCATATTCGTTCGTCTCCGCTTCTGTCCTTGTCCTTCGCTAYCAATCCGCTCCGATCGACGGAGATGAAAAACGAATGGATGGTGGTGGAGAATTAAGCTCATGGATTCCTGCTCGAAACTTTTGGGAATCTCTTCCATCTGGAACATCCATATCTCTAGCTGTTGCTGCATTGATAGCCTCCTTTTTCTGGCTCTCGTTCACATTTAGAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5741</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>594136</contig_pos>
        <strand>+</strand>
        <context>AATTMTATCT[C/T]ATCAAATATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGCGGTCGCTGATTTTCGATCAACCGAAATAAGATCCCCAATTCTATCT</left_flank>
        <right_flank>ATCAAATATTGATCACTTTTACAGGTTGAATTCCTCTCAATCGGAACCCT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGGTCTTCTTTTTGGATGGTTGGCACAAGTAAATTCGTATACAAAGGTTCCATTGAACGCAATTGTGGTGTTTACATTGATCAATGCGGTCATTTCGCTGGTTTTTGATATTGAGGCATTGGTGAGTTGGTTTATACGGTATCTCTTCGTACTTTAACATGTACTGTACTTTGATTCGGTACTGTGCCCTACATAAATTTAGGTCGTGAAATCGGGCCGACCAACCGAATGCCAACCCAACCTTGCTCACCGAATCCTTGCATTTGCGCGTCAATATTCCAGATTGTTTGCGTACCCAGCGCATTTACTGAATAGTGTGTCTTAAATTAAAATTCTGCGTACGCAAATGCTCTCTGTCAGGTTGACGCGAAATTGCATGAATTCGGTGGGCGCGCCGTCCGATCGGTCAGCTCGGTCGGCTGTCTGTCTACTGGGTCGGCGGTCGGTCGGCGGTCGCTGATTTTCGATCAACCGAAATAAGATCCCCAATTCTATCTCATCAAATATTGATCACTTTTACAGGTTGAATTCCTCTCAATCGGAACCCTCTTTGCATATTCGTTCGTCTCCGCTTCTGTCCTTGTCCTTCGCTATCAATCCGCTCCGATCGACGGAGATGAAAAACGAATGGATGGTGGTGGAGAATTAAGCTCATGGATTCCTGCTCGAAACTTTTGGGAATCTCTTCCATCTGGAACATCCATATCTCTAGCTGTTGCTGCATTGATAGCCTCCTTTTTCTGGCTCTCGTTCACATTTAGAACTGGTTTCTATGAAAGTTGGTATGGTCAGGTGTCGGTTGGATTCAATGGATTGTGTATAGTTTTGATAATGGCATTTATTTTGGGACATTCTCAAAATTCGTTGAAGACTAATTTCAAGGTGAGTACTCCTTCTATGGTTCTCGAATTTCTGAACATTTGAGATTTTAAATTTTTGAATATTTGAATTTGAGAACTTCTGAATCTCTCGATTTCCGCTAAAACAAAACATTTGGG</canonical>
            <polymorphic>GATGGTCTTCTTTTTGGATGGTTGGCACAAGTAAATTCGTATACAAAGGTTCCATTGAACGCAATTGTGGTGTTTACATTGATCAATGCGGTCATTTCGCTGGTTTTTGATATTGAGGCATTGGTGAGTTGGTTTATACGGTATCTCTTCGTACTTTAACATGTACTGTACTTTGATTCGGTACTGTGCCCTACATAAATTTAGGTCGTGAAATCGGGCCGACCAACCGAATGCCAACCCAACCTTGCTCACCGAATCCTTGCATTTGCGCGTCAATATTCCAGATTGTTTGCGTACCCAGCGCATTTACTGAATAGTGTGTCTTAAATTAAAATTCTGCGTACGCAAATGCTCTCTGTCAGGTTGACGCGAAATTGCATGAATTCGGTGGGCGCGCCGTCCGATCGGTCAGCTCGGTCGGCTGTCTGTCTACTGGGTCGGCGGTCGGTCGGCGGTCGCTGATTTTCGATCAACCGAAATAAGATCCCCAATTCTATCTYATCAAATATTGATCACTTTTACAGGTTGAATTCCTCTCAATCGGAACCCTCTTTGCATATTCGTTCGTCTCCGCTTCTGTCCTTGTCCTTCGCTATCAATCCGCTCCGATCGACGGAGATGAAAAACGAATGGATGGTGGTGGAGAATTAAGCTCATGGATTCCTGCTCGAAACTTTTGGGAATCTCTTCCATCTGGAACATCCATATCTCTAGCTGTTGCTGCATTGATAGCCTCCTTTTTCTGGCTCTCGTTCACATTTAGAACTGGTTTCTATGAAAGTTGGTATGGTCAGGTGTCGGTTGGATTCAATGGATTGTGTATAGTTTTGATAATGGCATTTATTTTGGGACATTCTCAAAATTCGTTGAAGACTAATTTCAAGGTGAGTACTCCTTCTATGGTTCTCGAATTTCTGAACATTTGAGATTTTAAATTTTTGAATATTTGAATTTGAGAACTTCTGAATCTCTCGATTTCCGCTAAAACAAAACATTTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCATTTACTGAATAGTGTGTCT</pcr_primer_p1>
		<pcr_primer_p2>GAATATGCAAAGAGGGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>CGCATTTACTGAATAGTGTGTCTTAAATTAAAATTCTGCGTACGCAAATGCTCTCTGTCAGGTTGACGCGAAATTGCATGAATTCGGTGGGCGCGCCGTCCGATCGGTCAGCTCGGTCGGCTGTCTGTCTACTGGGTCGGCGGTCGGTCGGCGGTCGCTGATTTTCGATCAACCGAAATAAGATCCCCAATTCTATCTCATCAAATATTGATCACTTTTACAGGTTGAATTCCTCTCAATCGGAACCCTCTTTGCATATTC</canonical_amplicon>
		<polymorphic_amplicon>CGCATTTACTGAATAGTGTGTCTTAAATTAAAATTCTGCGTACGCAAATGCTCTCTGTCAGGTTGACGCGAAATTGCATGAATTCGGTGGGCGCGCCGTCCGATCGGTCAGCTCGGTCGGCTGTCTGTCTACTGGGTCGGCGGTCGGTCGGCGGTCGCTGATTTTCGATCAACCGAAATAAGATCCCCAATTCTATCTYATCAAATATTGATCACTTTTACAGGTTGAATTCCTCTCAATCGGAACCCTCTTTGCATATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5742</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>594130</contig_pos>
        <strand>+</strand>
        <context>ATCCCCAATT[A/C]TATCTYATCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTCGGTCGGCGGTCGCTGATTTTCGATCAACCGAAATAAGATCCCCAATT</left_flank>
        <right_flank>TATCTCATCAAATATTGATCACTTTTACAGGTTGAATTCCTCTCAATCGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAGATGATGGTCTTCTTTTTGGATGGTTGGCACAAGTAAATTCGTATACAAAGGTTCCATTGAACGCAATTGTGGTGTTTACATTGATCAATGCGGTCATTTCGCTGGTTTTTGATATTGAGGCATTGGTGAGTTGGTTTATACGGTATCTCTTCGTACTTTAACATGTACTGTACTTTGATTCGGTACTGTGCCCTACATAAATTTAGGTCGTGAAATCGGGCCGACCAACCGAATGCCAACCCAACCTTGCTCACCGAATCCTTGCATTTGCGCGTCAATATTCCAGATTGTTTGCGTACCCAGCGCATTTACTGAATAGTGTGTCTTAAATTAAAATTCTGCGTACGCAAATGCTCTCTGTCAGGTTGACGCGAAATTGCATGAATTCGGTGGGCGCGCCGTCCGATCGGTCAGCTCGGTCGGCTGTCTGTCTACTGGGTCGGCGGTCGGTCGGCGGTCGCTGATTTTCGATCAACCGAAATAAGATCCCCAATTCTATCTCATCAAATATTGATCACTTTTACAGGTTGAATTCCTCTCAATCGGAACCCTCTTTGCATATTCGTTCGTCTCCGCTTCTGTCCTTGTCCTTCGCTATCAATCCGCTCCGATCGACGGAGATGAAAAACGAATGGATGGTGGTGGAGAATTAAGCTCATGGATTCCTGCTCGAAACTTTTGGGAATCTCTTCCATCTGGAACATCCATATCTCTAGCTGTTGCTGCATTGATAGCCTCCTTTTTCTGGCTCTCGTTCACATTTAGAACTGGTTTCTATGAAAGTTGGTATGGTCAGGTGTCGGTTGGATTCAATGGATTGTGTATAGTTTTGATAATGGCATTTATTTTGGGACATTCTCAAAATTCGTTGAAGACTAATTTCAAGGTGAGTACTCCTTCTATGGTTCTCGAATTTCTGAACATTTGAGATTTTAAATTTTTGAATATTTGAATTTGAGAACTTCTGAATCTCTCGATTTCCGCTAAAACAAAACA</canonical>
            <polymorphic>GCAGATGATGGTCTTCTTTTTGGATGGTTGGCACAAGTAAATTCGTATACAAAGGTTCCATTGAACGCAATTGTGGTGTTTACATTGATCAATGCGGTCATTTCGCTGGTTTTTGATATTGAGGCATTGGTGAGTTGGTTTATACGGTATCTCTTCGTACTTTAACATGTACTGTACTTTGATTCGGTACTGTGCCCTACATAAATTTAGGTCGTGAAATCGGGCCGACCAACCGAATGCCAACCCAACCTTGCTCACCGAATCCTTGCATTTGCGCGTCAATATTCCAGATTGTTTGCGTACCCAGCGCATTTACTGAATAGTGTGTCTTAAATTAAAATTCTGCGTACGCAAATGCTCTCTGTCAGGTTGACGCGAAATTGCATGAATTCGGTGGGCGCGCCGTCCGATCGGTCAGCTCGGTCGGCTGTCTGTCTACTGGGTCGGCGGTCGGTCGGCGGTCGCTGATTTTCGATCAACCGAAATAAGATCCCCAATTMTATCTCATCAAATATTGATCACTTTTACAGGTTGAATTCCTCTCAATCGGAACCCTCTTTGCATATTCGTTCGTCTCCGCTTCTGTCCTTGTCCTTCGCTATCAATCCGCTCCGATCGACGGAGATGAAAAACGAATGGATGGTGGTGGAGAATTAAGCTCATGGATTCCTGCTCGAAACTTTTGGGAATCTCTTCCATCTGGAACATCCATATCTCTAGCTGTTGCTGCATTGATAGCCTCCTTTTTCTGGCTCTCGTTCACATTTAGAACTGGTTTCTATGAAAGTTGGTATGGTCAGGTGTCGGTTGGATTCAATGGATTGTGTATAGTTTTGATAATGGCATTTATTTTGGGACATTCTCAAAATTCGTTGAAGACTAATTTCAAGGTGAGTACTCCTTCTATGGTTCTCGAATTTCTGAACATTTGAGATTTTAAATTTTTGAATATTTGAATTTGAGAACTTCTGAATCTCTCGATTTCCGCTAAAACAAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCATTTACTGAATAGTGTGTCT</pcr_primer_p1>
		<pcr_primer_p2>GAATATGCAAAGAGGGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>CGCATTTACTGAATAGTGTGTCTTAAATTAAAATTCTGCGTACGCAAATGCTCTCTGTCAGGTTGACGCGAAATTGCATGAATTCGGTGGGCGCGCCGTCCGATCGGTCAGCTCGGTCGGCTGTCTGTCTACTGGGTCGGCGGTCGGTCGGCGGTCGCTGATTTTCGATCAACCGAAATAAGATCCCCAATTCTATCTCATCAAATATTGATCACTTTTACAGGTTGAATTCCTCTCAATCGGAACCCTCTTTGCATATTC</canonical_amplicon>
		<polymorphic_amplicon>CGCATTTACTGAATAGTGTGTCTTAAATTAAAATTCTGCGTACGCAAATGCTCTCTGTCAGGTTGACGCGAAATTGCATGAATTCGGTGGGCGCGCCGTCCGATCGGTCAGCTCGGTCGGCTGTCTGTCTACTGGGTCGGCGGTCGGTCGGCGGTCGCTGATTTTCGATCAACCGAAATAAGATCCCCAATTMTATCTCATCAAATATTGATCACTTTTACAGGTTGAATTCCTCTCAATCGGAACCCTCTTTGCATATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5743</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>40288</contig_pos>
        <strand></strand>
        <context>GATGATGTTT[T/C]GGTACGAGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATAAGAAGAGGAAAAATGATTTTATGCTTAGTGACTTTCTGATGATGTTT</left_flank>
        <right_flank>GGTACGAGTGATAATGAATCATCCAAAAGAAAAGAGAATGAAAAAATAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTTACGTTTGAAAGTTGCTATCACTTTTATCACTGCCAATATCTTCGTTGGAGCCAGAATTGATTTTGATTGGAGAAGCATCGACATTCTCAGCCTGCCCGGATGGATCTTCCAACATAATATCAGATCTCGTAGCAAAGAAACTGTGAGGCATGAGAATATTTGAAGTAACTGGAGCAACGAGAAGAACCATGATAGCCAACAATTGGAGCGACATTCTGAACGGTGAGTTTGCAAGCCACCACAGCTAATTGCAAATGAAAAGCAGCTCGGAAAAAAGGGGCGGCGCTCAGTGGCAAAAACTGAACGCGTGGAGCGGCGAGAGCTGAAGCCGAAACGGAATGAAGAGACTGGATGCAAAGCACCGCCCTTTATAGACGTGCGGAAAGAAAAAGGGGGCGAGGCTTCGGATGATCTGGATTTCGGGGGGCAGCAATAACGTTGGAGATAAGAAGAGGAAAAATGATTTTATGCTTAGTGACTTTCTGATGATGTTTTGGTACGAGTGATAATGAATCATCCAAAAGAAAAGAGAATGAAAAAATAAAAATTAGACCATAAATTTCAAATACCATTAAGGATACCTCGGTTTTCACAAAATAAGATAATGTTTAGAAAATCACGAAAAATCAGATCTGCAATTTTTGAAGAATTTTACAAAATTCCTTTTTGCAAAACTAGACCAGACGTCACTGCCACTTTGCACAATAAACTGGGAGCAGTCATCCATGAAAAAAGTAGTAAAATATTCTATATAGGGTAATAAGTCATACTTCCTACACTTATTTAGACCGGAGTTCTATGAAATAAACAAAATTAAAACTTTTAATAAACAAACTTGAGAGTCGCACTGTTTCAAACTGTACAACTTCTTAAGAAACGTGACAAAAATTAATTACCGTAAACCAGTGATAGAAGAGCACTGTCAACATTAAGCTCAATTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGAC</canonical>
            <polymorphic>TACTTACGTTTGAAAGTTGCTATCACTTTTATCACTGCCAATATCTTCGTTGGAGCCAGAATTGATTTTGATTGGAGAAGCATCGACATTCTCAGCCTGCCCGGATGGATCTTCCAACATAATATCAGATCTCGTAGCAAAGAAACTGTGAGGCATGAGAATATTTGAAGTAACTGGAGCAACGAGAAGAACCATGATAGCCAACAATTGGAGCGACATTCTGAACGGTGAGTTTGCAAGCCACCACAGCTAATTGCAAATGAAAAGCAGCTCGGAAAAAAGGGGCGGCGCTCAGTGGCAAAAACTGAACGCGTGGAGCGGCGAGAGCTGAAGCCGAAACGGAATGAAGAGACTGGATGCAAAGCACCGCCCTTTATAGACGTGCGGAAAGAAAAAGGGGGCGAGGCTTCGGATGATCTGGATTTCGGGGGGCAGCAATAACGTTGGAGATAAGAAGAGGAAAAATGATTTTATGCTTAGTGACTTTCTGATGATGTTTYGGTACGAGTGATAATGAATCATCCAAAAGAAAAGAGAATGAAAAAATAAAAATTAGACCATAAATTTCAAATACCATTAAGGATACCTCGGTTTTCACAAAATAAGATAATGTTTAGAAAATCACGAAAAATCAGATCTGCAATTTTTGAAGAATTTTACAAAATTCCTTTTTGCAAAACTAGACCAGACGTCACTGCCACTTTGCACAATAAACTGGGAGCAGTCATCCATGAAAAAAGTAGTAAAATATTCTATATAGGGTAATAAGTCATACTTCCTACACTTATTTAGACCGGAGTTCTATGAAATAAACAAAATTAAAACTTTTAATAAACAAACTTGAGAGTCGCACTGTTTCAAACTGTACAACTTCTTAAGAAACGTGACAAAAATTAATTACCGTAAACCAGTGATAGAAGAGCACTGTCAACATTAAGCTCAATTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGATAAGAAGAGGAAAAATGA</pcr_primer_p1>
		<pcr_primer_p2>AGTGACGTCTGGTCTAGTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGAGATAAGAAGAGGAAAAATGATTTTATGCTTAGTGACTTTCTGATGATGTTTTGGTACGAGTGATAATGAATCATCCAAAAGAAAAGAGAATGAAAAAATAAAAATTAGACCATAAATTTCAAATACCATTAAGGATACCTCGGTTTTCACAAAATAAGATAATGTTTAGAAAATCACGAAAAATCAGATCTGCAATTTTTGAAGAATTTTACAAAATTCCTTTTTGCAAAACTAGACCAGACGTCACT</canonical_amplicon>
		<polymorphic_amplicon>GGAGATAAGAAGAGGAAAAATGATTTTATGCTTAGTGACTTTCTGATGATGTTTYGGTACGAGTGATAATGAATCATCCAAAAGAAAAGAGAATGAAAAAATAAAAATTAGACCATAAATTTCAAATACCATTAAGGATACCTCGGTTTTCACAAAATAAGATAATGTTTAGAAAATCACGAAAAATCAGATCTGCAATTTTTGAAGAATTTTACAAAATTCCTTTTTGCAAAACTAGACCAGACGTCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5744</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>40379</contig_pos>
        <strand></strand>
        <context>GGATACCTCG[G/C]YYTTCACAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AAAAAATAAAAATTAGACCATAAATTTCAAATACCATTAAGGATACCTCG</left_flank>
        <right_flank>TTTTCACAAAATAAGATAATGTTTAGAAAATCACGAAAAATCAGATCTGC</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGCCTGCCCGGATGGATCTTCCAACATAATATCAGATCTCGTAGCAAAGAAACTGTGAGGCATGAGAATATTTGAAGTAACTGGAGCAACGAGAAGAACCATGATAGCCAACAATTGGAGCGACATTCTGAACGGTGAGTTTGCAAGCCACCACAGCTAATTGCAAATGAAAAGCAGCTCGGAAAAAAGGGGCGGCGCTCAGTGGCAAAAACTGAACGCGTGGAGCGGCGAGAGCTGAAGCCGAAACGGAATGAAGAGACTGGATGCAAAGCACCGCCCTTTATAGACGTGCGGAAAGAAAAAGGGGGCGAGGCTTCGGATGATCTGGATTTCGGGGGGCAGCAATAACGTTGGAGATAAGAAGAGGAAAAATGATTTTATGCTTAGTGACTTTCTGATGATGTTTTGGTACGAGTGATAATGAATCATCCAAAAGAAAAGAGAATGAAAAAATAAAAATTAGACCATAAATTTCAAATACCATTAAGGATACCTCGGTTTTCACAAAATAAGATAATGTTTAGAAAATCACGAAAAATCAGATCTGCAATTTTTGAAGAATTTTACAAAATTCCTTTTTGCAAAACTAGACCAGACGTCACTGCCACTTTGCACAATAAACTGGGAGCAGTCATCCATGAAAAAAGTAGTAAAATATTCTATATAGGGTAATAAGTCATACTTCCTACACTTATTTAGACCGGAGTTCTATGAAATAAACAAAATTAAAACTTTTAATAAACAAACTTGAGAGTCGCACTGTTTCAAACTGTACAACTTCTTAAGAAACGTGACAAAAATTAATTACCGTAAACCAGTGATAGAAGAGCACTGTCAACATTAAGCTCAATTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGAGGGCACTTGAAAAATAGACTTGCAGCCTTTAATTGAATTGCCCCCGTAATACAATTGCATCTGCAGCAGTATTGCGTC</canonical>
            <polymorphic>TCAGCCTGCCCGGATGGATCTTCCAACATAATATCAGATCTCGTAGCAAAGAAACTGTGAGGCATGAGAATATTTGAAGTAACTGGAGCAACGAGAAGAACCATGATAGCCAACAATTGGAGCGACATTCTGAACGGTGAGTTTGCAAGCCACCACAGCTAATTGCAAATGAAAAGCAGCTCGGAAAAAAGGGGCGGCGCTCAGTGGCAAAAACTGAACGCGTGGAGCGGCGAGAGCTGAAGCCGAAACGGAATGAAGAGACTGGATGCAAAGCACCGCCCTTTATAGACGTGCGGAAAGAAAAAGGGGGCGAGGCTTCGGATGATCTGGATTTCGGGGGGCAGCAATAACGTTGGAGATAAGAAGAGGAAAAATGATTTTATGCTTAGTGACTTTCTGATGATGTTTTGGTACGAGTGATAATGAATCATCCAAAAGAAAAGAGAATGAAAAAATAAAAATTAGACCATAAATTTCAAATACCATTAAGGATACCTCGSTTTTCACAAAATAAGATAATGTTTAGAAAATCACGAAAAATCAGATCTGCAATTTTTGAAGAATTTTACAAAATTCCTTTTTGCAAAACTAGACCAGACGTCACTGCCACTTTGCACAATAAACTGGGAGCAGTCATCCATGAAAAAAGTAGTAAAATATTCTATATAGGGTAATAAGTCATACTTCCTACACTTATTTAGACCGGAGTTCTATGAAATAAACAAAATTAAAACTTTTAATAAACAAACTTGAGAGTCGCACTGTTTCAAACTGTACAACTTCTTAAGAAACGTGACAAAAATTAATTACCGTAAACCAGTGATAGAAGAGCACTGTCAACATTAAGCTCAATTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGAGGGCACTTGAAAAATAGACTTGCAGCCTTTAATTGAATTGCCCCCGTAATACAATTGCATCTGCAGCAGTATTGCGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAGATAAGAAGAGGAAAAATGA</pcr_primer_p1>
		<pcr_primer_p2>AGTGACGTCTGGTCTAGTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGAGATAAGAAGAGGAAAAATGATTTTATGCTTAGTGACTTTCTGATGATGTTTTGGTACGAGTGATAATGAATCATCCAAAAGAAAAGAGAATGAAAAAATAAAAATTAGACCATAAATTTCAAATACCATTAAGGATACCTCGGTTTTCACAAAATAAGATAATGTTTAGAAAATCACGAAAAATCAGATCTGCAATTTTTGAAGAATTTTACAAAATTCCTTTTTGCAAAACTAGACCAGACGTCACT</canonical_amplicon>
		<polymorphic_amplicon>GGAGATAAGAAGAGGAAAAATGATTTTATGCTTAGTGACTTTCTGATGATGTTTTGGTACGAGTGATAATGAATCATCCAAAAGAAAAGAGAATGAAAAAATAAAAATTAGACCATAAATTTCAAATACCATTAAGGATACCTCGSTTTTCACAAAATAAGATAATGTTTAGAAAATCACGAAAAATCAGATCTGCAATTTTTGAAGAATTTTACAAAATTCCTTTTTGCAAAACTAGACCAGACGTCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5745</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>40380</contig_pos>
        <strand></strand>
        <context>GATACCTCGS[T/C]YTTCACAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAAATAAAAATTAGACCATAAATTTCAAATACCATTAAGGATACCTCGG</left_flank>
        <right_flank>TTTCACAAAATAAGATAATGTTTAGAAAATCACGAAAAATCAGATCTGCA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCCTGCCCGGATGGATCTTCCAACATAATATCAGATCTCGTAGCAAAGAAACTGTGAGGCATGAGAATATTTGAAGTAACTGGAGCAACGAGAAGAACCATGATAGCCAACAATTGGAGCGACATTCTGAACGGTGAGTTTGCAAGCCACCACAGCTAATTGCAAATGAAAAGCAGCTCGGAAAAAAGGGGCGGCGCTCAGTGGCAAAAACTGAACGCGTGGAGCGGCGAGAGCTGAAGCCGAAACGGAATGAAGAGACTGGATGCAAAGCACCGCCCTTTATAGACGTGCGGAAAGAAAAAGGGGGCGAGGCTTCGGATGATCTGGATTTCGGGGGGCAGCAATAACGTTGGAGATAAGAAGAGGAAAAATGATTTTATGCTTAGTGACTTTCTGATGATGTTTTGGTACGAGTGATAATGAATCATCCAAAAGAAAAGAGAATGAAAAAATAAAAATTAGACCATAAATTTCAAATACCATTAAGGATACCTCGGTTTTCACAAAATAAGATAATGTTTAGAAAATCACGAAAAATCAGATCTGCAATTTTTGAAGAATTTTACAAAATTCCTTTTTGCAAAACTAGACCAGACGTCACTGCCACTTTGCACAATAAACTGGGAGCAGTCATCCATGAAAAAAGTAGTAAAATATTCTATATAGGGTAATAAGTCATACTTCCTACACTTATTTAGACCGGAGTTCTATGAAATAAACAAAATTAAAACTTTTAATAAACAAACTTGAGAGTCGCACTGTTTCAAACTGTACAACTTCTTAAGAAACGTGACAAAAATTAATTACCGTAAACCAGTGATAGAAGAGCACTGTCAACATTAAGCTCAATTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGAGGGCACTTGAAAAATAGACTTGCAGCCTTTAATTGAATTGCCCCCGTAATACAATTGCATCTGCAGCAGTATTGCGTCT</canonical>
            <polymorphic>CAGCCTGCCCGGATGGATCTTCCAACATAATATCAGATCTCGTAGCAAAGAAACTGTGAGGCATGAGAATATTTGAAGTAACTGGAGCAACGAGAAGAACCATGATAGCCAACAATTGGAGCGACATTCTGAACGGTGAGTTTGCAAGCCACCACAGCTAATTGCAAATGAAAAGCAGCTCGGAAAAAAGGGGCGGCGCTCAGTGGCAAAAACTGAACGCGTGGAGCGGCGAGAGCTGAAGCCGAAACGGAATGAAGAGACTGGATGCAAAGCACCGCCCTTTATAGACGTGCGGAAAGAAAAAGGGGGCGAGGCTTCGGATGATCTGGATTTCGGGGGGCAGCAATAACGTTGGAGATAAGAAGAGGAAAAATGATTTTATGCTTAGTGACTTTCTGATGATGTTTTGGTACGAGTGATAATGAATCATCCAAAAGAAAAGAGAATGAAAAAATAAAAATTAGACCATAAATTTCAAATACCATTAAGGATACCTCGGYTTTCACAAAATAAGATAATGTTTAGAAAATCACGAAAAATCAGATCTGCAATTTTTGAAGAATTTTACAAAATTCCTTTTTGCAAAACTAGACCAGACGTCACTGCCACTTTGCACAATAAACTGGGAGCAGTCATCCATGAAAAAAGTAGTAAAATATTCTATATAGGGTAATAAGTCATACTTCCTACACTTATTTAGACCGGAGTTCTATGAAATAAACAAAATTAAAACTTTTAATAAACAAACTTGAGAGTCGCACTGTTTCAAACTGTACAACTTCTTAAGAAACGTGACAAAAATTAATTACCGTAAACCAGTGATAGAAGAGCACTGTCAACATTAAGCTCAATTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGAGGGCACTTGAAAAATAGACTTGCAGCCTTTAATTGAATTGCCCCCGTAATACAATTGCATCTGCAGCAGTATTGCGTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGATAAGAAGAGGAAAAATGA</pcr_primer_p1>
		<pcr_primer_p2>AGTGACGTCTGGTCTAGTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGAGATAAGAAGAGGAAAAATGATTTTATGCTTAGTGACTTTCTGATGATGTTTTGGTACGAGTGATAATGAATCATCCAAAAGAAAAGAGAATGAAAAAATAAAAATTAGACCATAAATTTCAAATACCATTAAGGATACCTCGGTTTTCACAAAATAAGATAATGTTTAGAAAATCACGAAAAATCAGATCTGCAATTTTTGAAGAATTTTACAAAATTCCTTTTTGCAAAACTAGACCAGACGTCACT</canonical_amplicon>
		<polymorphic_amplicon>GGAGATAAGAAGAGGAAAAATGATTTTATGCTTAGTGACTTTCTGATGATGTTTTGGTACGAGTGATAATGAATCATCCAAAAGAAAAGAGAATGAAAAAATAAAAATTAGACCATAAATTTCAAATACCATTAAGGATACCTCGGYTTTCACAAAATAAGATAATGTTTAGAAAATCACGAAAAATCAGATCTGCAATTTTTGAAGAATTTTACAAAATTCCTTTTTGCAAAACTAGACCAGACGTCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5746</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>40381</contig_pos>
        <strand></strand>
        <context>ATACCTCGSY[T/C]TTCACAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAATAAAAATTAGACCATAAATTTCAAATACCATTAAGGATACCTCGGT</left_flank>
        <right_flank>TTCACAAAATAAGATAATGTTTAGAAAATCACGAAAAATCAGATCTGCAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCTGCCCGGATGGATCTTCCAACATAATATCAGATCTCGTAGCAAAGAAACTGTGAGGCATGAGAATATTTGAAGTAACTGGAGCAACGAGAAGAACCATGATAGCCAACAATTGGAGCGACATTCTGAACGGTGAGTTTGCAAGCCACCACAGCTAATTGCAAATGAAAAGCAGCTCGGAAAAAAGGGGCGGCGCTCAGTGGCAAAAACTGAACGCGTGGAGCGGCGAGAGCTGAAGCCGAAACGGAATGAAGAGACTGGATGCAAAGCACCGCCCTTTATAGACGTGCGGAAAGAAAAAGGGGGCGAGGCTTCGGATGATCTGGATTTCGGGGGGCAGCAATAACGTTGGAGATAAGAAGAGGAAAAATGATTTTATGCTTAGTGACTTTCTGATGATGTTTTGGTACGAGTGATAATGAATCATCCAAAAGAAAAGAGAATGAAAAAATAAAAATTAGACCATAAATTTCAAATACCATTAAGGATACCTCGGTTTTCACAAAATAAGATAATGTTTAGAAAATCACGAAAAATCAGATCTGCAATTTTTGAAGAATTTTACAAAATTCCTTTTTGCAAAACTAGACCAGACGTCACTGCCACTTTGCACAATAAACTGGGAGCAGTCATCCATGAAAAAAGTAGTAAAATATTCTATATAGGGTAATAAGTCATACTTCCTACACTTATTTAGACCGGAGTTCTATGAAATAAACAAAATTAAAACTTTTAATAAACAAACTTGAGAGTCGCACTGTTTCAAACTGTACAACTTCTTAAGAAACGTGACAAAAATTAATTACCGTAAACCAGTGATAGAAGAGCACTGTCAACATTAAGCTCAATTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGAGGGCACTTGAAAAATAGACTTGCAGCCTTTAATTGAATTGCCCCCGTAATACAATTGCATCTGCAGCAGTATTGCGTCTC</canonical>
            <polymorphic>AGCCTGCCCGGATGGATCTTCCAACATAATATCAGATCTCGTAGCAAAGAAACTGTGAGGCATGAGAATATTTGAAGTAACTGGAGCAACGAGAAGAACCATGATAGCCAACAATTGGAGCGACATTCTGAACGGTGAGTTTGCAAGCCACCACAGCTAATTGCAAATGAAAAGCAGCTCGGAAAAAAGGGGCGGCGCTCAGTGGCAAAAACTGAACGCGTGGAGCGGCGAGAGCTGAAGCCGAAACGGAATGAAGAGACTGGATGCAAAGCACCGCCCTTTATAGACGTGCGGAAAGAAAAAGGGGGCGAGGCTTCGGATGATCTGGATTTCGGGGGGCAGCAATAACGTTGGAGATAAGAAGAGGAAAAATGATTTTATGCTTAGTGACTTTCTGATGATGTTTTGGTACGAGTGATAATGAATCATCCAAAAGAAAAGAGAATGAAAAAATAAAAATTAGACCATAAATTTCAAATACCATTAAGGATACCTCGGTYTTCACAAAATAAGATAATGTTTAGAAAATCACGAAAAATCAGATCTGCAATTTTTGAAGAATTTTACAAAATTCCTTTTTGCAAAACTAGACCAGACGTCACTGCCACTTTGCACAATAAACTGGGAGCAGTCATCCATGAAAAAAGTAGTAAAATATTCTATATAGGGTAATAAGTCATACTTCCTACACTTATTTAGACCGGAGTTCTATGAAATAAACAAAATTAAAACTTTTAATAAACAAACTTGAGAGTCGCACTGTTTCAAACTGTACAACTTCTTAAGAAACGTGACAAAAATTAATTACCGTAAACCAGTGATAGAAGAGCACTGTCAACATTAAGCTCAATTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGAGGGCACTTGAAAAATAGACTTGCAGCCTTTAATTGAATTGCCCCCGTAATACAATTGCATCTGCAGCAGTATTGCGTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGATAAGAAGAGGAAAAATGA</pcr_primer_p1>
		<pcr_primer_p2>AGTGACGTCTGGTCTAGTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGAGATAAGAAGAGGAAAAATGATTTTATGCTTAGTGACTTTCTGATGATGTTTTGGTACGAGTGATAATGAATCATCCAAAAGAAAAGAGAATGAAAAAATAAAAATTAGACCATAAATTTCAAATACCATTAAGGATACCTCGGTTTTCACAAAATAAGATAATGTTTAGAAAATCACGAAAAATCAGATCTGCAATTTTTGAAGAATTTTACAAAATTCCTTTTTGCAAAACTAGACCAGACGTCACT</canonical_amplicon>
		<polymorphic_amplicon>GGAGATAAGAAGAGGAAAAATGATTTTATGCTTAGTGACTTTCTGATGATGTTTTGGTACGAGTGATAATGAATCATCCAAAAGAAAAGAGAATGAAAAAATAAAAATTAGACCATAAATTTCAAATACCATTAAGGATACCTCGGTYTTCACAAAATAAGATAATGTTTAGAAAATCACGAAAAATCAGATCTGCAATTTTTGAAGAATTTTACAAAATTCCTTTTTGCAAAACTAGACCAGACGTCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5747</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>40636</contig_pos>
        <strand></strand>
        <context>AACTTGAGAG[T/C]CGCACTGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGTTCTATGAAATAAACAAAATTAAAACTTTTAATAAACAAACTTGAGAG</left_flank>
        <right_flank>CGCACTGTTTCAAACTGTACAACTTCTTAAGAAACGTGACAAAAATTAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGACTGGATGCAAAGCACCGCCCTTTATAGACGTGCGGAAAGAAAAAGGGGGCGAGGCTTCGGATGATCTGGATTTCGGGGGGCAGCAATAACGTTGGAGATAAGAAGAGGAAAAATGATTTTATGCTTAGTGACTTTCTGATGATGTTTTGGTACGAGTGATAATGAATCATCCAAAAGAAAAGAGAATGAAAAAATAAAAATTAGACCATAAATTTCAAATACCATTAAGGATACCTCGGTTTTCACAAAATAAGATAATGTTTAGAAAATCACGAAAAATCAGATCTGCAATTTTTGAAGAATTTTACAAAATTCCTTTTTGCAAAACTAGACCAGACGTCACTGCCACTTTGCACAATAAACTGGGAGCAGTCATCCATGAAAAAAGTAGTAAAATATTCTATATAGGGTAATAAGTCATACTTCCTACACTTATTTAGACCGGAGTTCTATGAAATAAACAAAATTAAAACTTTTAATAAACAAACTTGAGAGTCGCACTGTTTCAAACTGTACAACTTCTTAAGAAACGTGACAAAAATTAATTACCGTAAACCAGTGATAGAAGAGCACTGTCAACATTAAGCTCAATTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGAGGGCACTTGAAAAATAGACTTGCAGCCTTTAATTGAATTGCCCCCGTAATACAATTGCATCTGCAGCAGTATTGCGTCTCCGCCGGGAGCACTGTACAATTTTTAGTCTGTGACACCGTGGCGAACTATTGCACAGTTGTTTTTCGAATTTCTTTTTTTTTTAAACTACCCACCTAATTTCTGGTTTATTTTTATTTTTCTTGAGCGAGAAATGGAAGAAATTCAGGTGATTCTTGGAGATATTGAAATTGAGGAAGACGATAGAGAAGTGAACCATGCCGAAGAAGAAGACAATAACTATGACAGTGATGCCTCGATTTTTTGATTTTTTAAAA</canonical>
            <polymorphic>GAGACTGGATGCAAAGCACCGCCCTTTATAGACGTGCGGAAAGAAAAAGGGGGCGAGGCTTCGGATGATCTGGATTTCGGGGGGCAGCAATAACGTTGGAGATAAGAAGAGGAAAAATGATTTTATGCTTAGTGACTTTCTGATGATGTTTTGGTACGAGTGATAATGAATCATCCAAAAGAAAAGAGAATGAAAAAATAAAAATTAGACCATAAATTTCAAATACCATTAAGGATACCTCGGTTTTCACAAAATAAGATAATGTTTAGAAAATCACGAAAAATCAGATCTGCAATTTTTGAAGAATTTTACAAAATTCCTTTTTGCAAAACTAGACCAGACGTCACTGCCACTTTGCACAATAAACTGGGAGCAGTCATCCATGAAAAAAGTAGTAAAATATTCTATATAGGGTAATAAGTCATACTTCCTACACTTATTTAGACCGGAGTTCTATGAAATAAACAAAATTAAAACTTTTAATAAACAAACTTGAGAGYCGCACTGTTTCAAACTGTACAACTTCTTAAGAAACGTGACAAAAATTAATTACCGTAAACCAGTGATAGAAGAGCACTGTCAACATTAAGCTCAATTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGAGGGCACTTGAAAAATAGACTTGCAGCCTTTAATTGAATTGCCCCCGTAATACAATTGCATCTGCAGCAGTATTGCGTCTCCGCCGGGAGCACTGTACAATTTTTAGTCTGTGACACCGTGGCGAACTATTGCACAGTTGTTTTTCGAATTTCTTTTTTTTTTAAACTACCCACCTAATTTCTGGTTTATTTTTATTTTTCTTGAGCGAGAAATGGAAGAAATTCAGGTGATTCTTGGAGATATTGAAATTGAGGAAGACGATAGAGAAGTGAACCATGCCGAAGAAGAAGACAATAACTATGACAGTGATGCCTCGATTTTTTGATTTTTTAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>397 329 168 106</canonical_bands>
                <polymorphic_bands>726 168 106</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACTAGACCAGACGTCACTG</pcr_primer_p1>
		<pcr_primer_p2>GTGCTCTTCTATCACTGGTTTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAACTAGACCAGACGTCACTGCCACTTTGCACAATAAACTGGGAGCAGTCATCCATGAAAAAAGTAGTAAAATATTCTATATAGGGTAATAAGTCATACTTCCTACACTTATTTAGACCGGAGTTCTATGAAATAAACAAAATTAAAACTTTTAATAAACAAACTTGAGAGTCGCACTGTTTCAAACTGTACAACTTCTTAAGAAACGTGACAAAAATTAATTACCGTAAACCAGTGATAGAAGAGCAC</canonical_amplicon>
		<polymorphic_amplicon>AAAACTAGACCAGACGTCACTGCCACTTTGCACAATAAACTGGGAGCAGTCATCCATGAAAAAAGTAGTAAAATATTCTATATAGGGTAATAAGTCATACTTCCTACACTTATTTAGACCGGAGTTCTATGAAATAAACAAAATTAAAACTTTTAATAAACAAACTTGAGAGYCGCACTGTTTCAAACTGTACAACTTCTTAAGAAACGTGACAAAAATTAATTACCGTAAACCAGTGATAGAAGAGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5748</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>104796</contig_pos>
        <strand>+</strand>
        <context>TCGTCATCCC[C/T]TAAATTGAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATGGTGGGGATTGTCATTCTTATTTTTCCTTTTCTCGTCGTCATCCC</left_flank>
        <right_flank>TAAATTGAGTAATGTACATAACCTGTCTCATAATTGTCCCTTACGCAACC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCACGCGCGATTCTTTTCTGCCACTCTATCGTCTCATCAAAACGCTCTTCGTTTTTCACAGTCTTACCATGTTGCACAGTTTTTTAAAATTATGACACACAAGAAGAATTTAAGAGAACGTTGAATGACAAACGGAAAAAAACATTTTTTTTTATTTTTATTGATTCTTTTTTCTGTATGCCTGACAGTTTTTCCTACCATCAGCTATTACCAGTCTAGGAATCTCAAGAAAAATTATATCTAATTAGCCTTTTTGTGTTTTCCATTCGACAGGAGCCATTATTTGCTCTATGAGAAATTCTGATACGATAGTTGTGAAGAAATAGAAGTTTAATAAAACGAGTATTCTTTCAAAATTCAACAAAAAAACGAAAATGAAGCGTAGCACGAGAAAAAAGTAATCCTTTCGATGAGAATGTAACGAGTCTAATACATAACCACCGGAAAAGAAAATGGTGGGGATTGTCATTCTTATTTTTCCTTTTCTCGTCGTCATCCCTTAAATTGAGTAATGTACATAACCTGTCTCATAATTGTCCCTTACGCAACCTTCACGATTTCGATTTGGCATGTAGAAGCCGCTAAAAACTTTCAATTCACTTTTCGGACGATTTCGACTTCATCCGAAGGTTACTACATGCTTTTTGTGAGAAATTGAACTGAGATTGGAGAAGGGAAAATGAAAGTGAAAGAAGTACAGAGCTACAGTAAGACTTCTACGCATTATAAAAGTCTTAGAAATATTAATCTGGATTTTACAATTGTCTGATCTACGAAAACGTCATCTTCATACTGTATTTTTTGTTTATCTTATTTGACTACACATACAACAATCATTTCAGGAAAGAGCCCACTCCAAATATATTCAATTATCAATCATATAATCCGGTGAATAAAATGTTGAAGAGTCAAACTGCTGCTCGGCCAATCAGTTATAGTCAAGAATCCGCGTCTACTAATCTTCTTGGTATCATTGATGTGAAAACCAAAGCAGTTCAAA</canonical>
            <polymorphic>GCACGCGCGATTCTTTTCTGCCACTCTATCGTCTCATCAAAACGCTCTTCGTTTTTCACAGTCTTACCATGTTGCACAGTTTTTTAAAATTATGACACACAAGAAGAATTTAAGAGAACGTTGAATGACAAACGGAAAAAAACATTTTTTTTTATTTTTATTGATTCTTTTTTCTGTATGCCTGACAGTTTTTCCTACCATCAGCTATTACCAGTCTAGGAATCTCAAGAAAAATTATATCTAATTAGCCTTTTTGTGTTTTCCATTCGACAGGAGCCATTATTTGCTCTATGAGAAATTCTGATACGATAGTTGTGAAGAAATAGAAGTTTAATAAAACGAGTATTCTTTCAAAATTCAACAAAAAAACGAAAATGAAGCGTAGCACGAGAAAAAAGTAATCCTTTCGATGAGAATGTAACGAGTCTAATACATAACCACCGGAAAAGAAAATGGTGGGGATTGTCATTCTTATTTTTCCTTTTCTCGTCGTCATCCCYTAAATTGAGTAATGTACATAACCTGTCTCATAATTGTCCCTTACGCAACCTTCACGATTTCGATTTGGCATGTAGAAGCCGCTAAAAACTTTCAATTCACTTTTCGGACGATTTCGACTTCATCCGAAGGTTACTACATGCTTTTTGTGAGAAATTGAACTGAGATTGGAGAAGGGAAAATGAAAGTGAAAGAAGTACAGAGCTACAGTAAGACTTCTACGCATTATAAAAGTCTTAGAAATATTAATCTGGATTTTACAATTGTCTGATCTACGAAAACGTCATCTTCATACTGTATTTTTTGTTTATCTTATTTGACTACACATACAACAATCATTTCAGGAAAGAGCCCACTCCAAATATATTCAATTATCAATCATATAATCCGGTGAATAAAATGTTGAAGAGTCAAACTGCTGCTCGGCCAATCAGTTATAGTCAAGAATCCGCGTCTACTAATCTTCTTGGTATCATTGATGTGAAAACCAAAGCAGTTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>256 244 221 169 84 26</canonical_bands>
                <polymorphic_bands>413 256 221 84 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATCCTTTCGATGAGAATGTAA</pcr_primer_p1>
		<pcr_primer_p2>CACAAAAAGCATGTAGTAACCTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAATCCTTTCGATGAGAATGTAACGAGTCTAATACATAACCACCGGAAAAGAAAATGGTGGGGATTGTCATTCTTATTTTTCCTTTTCTCGTCGTCATCCCTTAAATTGAGTAATGTACATAACCTGTCTCATAATTGTCCCTTACGCAACCTTCACGATTTCGATTTGGCATGTAGAAGCCGCTAAAAACTTTCAATTCACTTTTCGGACGATTTCGACTTCATCCGAAGGTTACTACATGCTTTTTGTG</canonical_amplicon>
		<polymorphic_amplicon>TAATCCTTTCGATGAGAATGTAACGAGTCTAATACATAACCACCGGAAAAGAAAATGGTGGGGATTGTCATTCTTATTTTTCCTTTTCTCGTCGTCATCCCYTAAATTGAGTAATGTACATAACCTGTCTCATAATTGTCCCTTACGCAACCTTCACGATTTCGATTTGGCATGTAGAAGCCGCTAAAAACTTTCAATTCACTTTTCGGACGATTTCGACTTCATCCGAAGGTTACTACATGCTTTTTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5749</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>104971</contig_pos>
        <strand>+</strand>
        <context>ATTGGAGAAG[A/G]GAAAATGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAAGGTTACTACATGCTTTTTGTGAGAAATTGAACTGAGATTGGAGAAG</left_flank>
        <right_flank>GAAAATGAAAGTGAAAGAAGTACAGAGCTACAGTAAGACTTCTACGCATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATGCCTGACAGTTTTTCCTACCATCAGCTATTACCAGTCTAGGAATCTCAAGAAAAATTATATCTAATTAGCCTTTTTGTGTTTTCCATTCGACAGGAGCCATTATTTGCTCTATGAGAAATTCTGATACGATAGTTGTGAAGAAATAGAAGTTTAATAAAACGAGTATTCTTTCAAAATTCAACAAAAAAACGAAAATGAAGCGTAGCACGAGAAAAAAGTAATCCTTTCGATGAGAATGTAACGAGTCTAATACATAACCACCGGAAAAGAAAATGGTGGGGATTGTCATTCTTATTTTTCCTTTTCTCGTCGTCATCCCTTAAATTGAGTAATGTACATAACCTGTCTCATAATTGTCCCTTACGCAACCTTCACGATTTCGATTTGGCATGTAGAAGCCGCTAAAAACTTTCAATTCACTTTTCGGACGATTTCGACTTCATCCGAAGGTTACTACATGCTTTTTGTGAGAAATTGAACTGAGATTGGAGAAGGGAAAATGAAAGTGAAAGAAGTACAGAGCTACAGTAAGACTTCTACGCATTATAAAAGTCTTAGAAATATTAATCTGGATTTTACAATTGTCTGATCTACGAAAACGTCATCTTCATACTGTATTTTTTGTTTATCTTATTTGACTACACATACAACAATCATTTCAGGAAAGAGCCCACTCCAAATATATTCAATTATCAATCATATAATCCGGTGAATAAAATGTTGAAGAGTCAAACTGCTGCTCGGCCAATCAGTTATAGTCAAGAATCCGCGTCTACTAATCTTCTTGGTATCATTGATGTGAAAACCAAAGCAGTTCAAAATTTAAGAGGTAACTAGTGATATCAGAAATTGAGCGAATTTTTTTTGTTTCAGATGCTTTGAAACTAACGACCATCAACCGACTTCTAACCACAAGCTACGATGAGGACGCTAAAAATATAGAAGTTGGTGAAAACCCCGGGAAAAATAACTTATTTCCAAAATATTCGGTGGAA</canonical>
            <polymorphic>GTATGCCTGACAGTTTTTCCTACCATCAGCTATTACCAGTCTAGGAATCTCAAGAAAAATTATATCTAATTAGCCTTTTTGTGTTTTCCATTCGACAGGAGCCATTATTTGCTCTATGAGAAATTCTGATACGATAGTTGTGAAGAAATAGAAGTTTAATAAAACGAGTATTCTTTCAAAATTCAACAAAAAAACGAAAATGAAGCGTAGCACGAGAAAAAAGTAATCCTTTCGATGAGAATGTAACGAGTCTAATACATAACCACCGGAAAAGAAAATGGTGGGGATTGTCATTCTTATTTTTCCTTTTCTCGTCGTCATCCCTTAAATTGAGTAATGTACATAACCTGTCTCATAATTGTCCCTTACGCAACCTTCACGATTTCGATTTGGCATGTAGAAGCCGCTAAAAACTTTCAATTCACTTTTCGGACGATTTCGACTTCATCCGAAGGTTACTACATGCTTTTTGTGAGAAATTGAACTGAGATTGGAGAAGRGAAAATGAAAGTGAAAGAAGTACAGAGCTACAGTAAGACTTCTACGCATTATAAAAGTCTTAGAAATATTAATCTGGATTTTACAATTGTCTGATCTACGAAAACGTCATCTTCATACTGTATTTTTTGTTTATCTTATTTGACTACACATACAACAATCATTTCAGGAAAGAGCCCACTCCAAATATATTCAATTATCAATCATATAATCCGGTGAATAAAATGTTGAAGAGTCAAACTGCTGCTCGGCCAATCAGTTATAGTCAAGAATCCGCGTCTACTAATCTTCTTGGTATCATTGATGTGAAAACCAAAGCAGTTCAAAATTTAAGAGGTAACTAGTGATATCAGAAATTGAGCGAATTTTTTTTGTTTCAGATGCTTTGAAACTAACGACCATCAACCGACTTCTAACCACAAGCTACGATGAGGACGCTAAAAATATAGAAGTTGGTGAAAACCCCGGGAAAAATAACTTATTTCCAAAATATTCGGTGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTCATCCGAAGGTTACTACAT</pcr_primer_p1>
		<pcr_primer_p2>CTTTCCTGAAATGATTGTTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>ACTTCATCCGAAGGTTACTACATGCTTTTTGTGAGAAATTGAACTGAGATTGGAGAAGGGAAAATGAAAGTGAAAGAAGTACAGAGCTACAGTAAGACTTCTACGCATTATAAAAGTCTTAGAAATATTAATCTGGATTTTACAATTGTCTGATCTACGAAAACGTCATCTTCATACTGTATTTTTTGTTTATCTTATTTGACTACACATACAACAATCATTTCAGGAAAG</canonical_amplicon>
		<polymorphic_amplicon>ACTTCATCCGAAGGTTACTACATGCTTTTTGTGAGAAATTGAACTGAGATTGGAGAAGRGAAAATGAAAGTGAAAGAAGTACAGAGCTACAGTAAGACTTCTACGCATTATAAAAGTCTTAGAAATATTAATCTGGATTTTACAATTGTCTGATCTACGAAAACGTCATCTTCATACTGTATTTTTTGTTTATCTTATTTGACTACACATACAACAATCATTTCAGGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5750</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>105093</contig_pos>
        <strand>+</strand>
        <context>TTCATACTGT[A/C]TTTTTTGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCTGGATTTTACAATTGTCTGATCTACGAAAACGTCATCTTCATACTGT</left_flank>
        <right_flank>TTTTTTGTTTATCTTATTTGACTACACATACAACAATCATTTCAGGAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTGATACGATAGTTGTGAAGAAATAGAAGTTTAATAAAACGAGTATTCTTTCAAAATTCAACAAAAAAACGAAAATGAAGCGTAGCACGAGAAAAAAGTAATCCTTTCGATGAGAATGTAACGAGTCTAATACATAACCACCGGAAAAGAAAATGGTGGGGATTGTCATTCTTATTTTTCCTTTTCTCGTCGTCATCCCTTAAATTGAGTAATGTACATAACCTGTCTCATAATTGTCCCTTACGCAACCTTCACGATTTCGATTTGGCATGTAGAAGCCGCTAAAAACTTTCAATTCACTTTTCGGACGATTTCGACTTCATCCGAAGGTTACTACATGCTTTTTGTGAGAAATTGAACTGAGATTGGAGAAGGGAAAATGAAAGTGAAAGAAGTACAGAGCTACAGTAAGACTTCTACGCATTATAAAAGTCTTAGAAATATTAATCTGGATTTTACAATTGTCTGATCTACGAAAACGTCATCTTCATACTGTATTTTTTGTTTATCTTATTTGACTACACATACAACAATCATTTCAGGAAAGAGCCCACTCCAAATATATTCAATTATCAATCATATAATCCGGTGAATAAAATGTTGAAGAGTCAAACTGCTGCTCGGCCAATCAGTTATAGTCAAGAATCCGCGTCTACTAATCTTCTTGGTATCATTGATGTGAAAACCAAAGCAGTTCAAAATTTAAGAGGTAACTAGTGATATCAGAAATTGAGCGAATTTTTTTTGTTTCAGATGCTTTGAAACTAACGACCATCAACCGACTTCTAACCACAAGCTACGATGAGGACGCTAAAAATATAGAAGTTGGTGAAAACCCCGGGAAAAATAACTTATTTCCAAAATATTCGGTGGAAGATAGCCAACTTTGATAGCCTAGAAAAATAGTCCAACATTTTTCAAAATGTCTTAGTCCGTTCAAGAGTATACTAAACAAAAAATTGAAGCCTAATTTTTGCAATTAACAAAAAAATGCAAT</canonical>
            <polymorphic>ATTCTGATACGATAGTTGTGAAGAAATAGAAGTTTAATAAAACGAGTATTCTTTCAAAATTCAACAAAAAAACGAAAATGAAGCGTAGCACGAGAAAAAAGTAATCCTTTCGATGAGAATGTAACGAGTCTAATACATAACCACCGGAAAAGAAAATGGTGGGGATTGTCATTCTTATTTTTCCTTTTCTCGTCGTCATCCCTTAAATTGAGTAATGTACATAACCTGTCTCATAATTGTCCCTTACGCAACCTTCACGATTTCGATTTGGCATGTAGAAGCCGCTAAAAACTTTCAATTCACTTTTCGGACGATTTCGACTTCATCCGAAGGTTACTACATGCTTTTTGTGAGAAATTGAACTGAGATTGGAGAAGGGAAAATGAAAGTGAAAGAAGTACAGAGCTACAGTAAGACTTCTACGCATTATAAAAGTCTTAGAAATATTAATCTGGATTTTACAATTGTCTGATCTACGAAAACGTCATCTTCATACTGTMTTTTTTGTTTATCTTATTTGACTACACATACAACAATCATTTCAGGAAAGAGCCCACTCCAAATATATTCAATTATCAATCATATAATCCGGTGAATAAAATGTTGAAGAGTCAAACTGCTGCTCGGCCAATCAGTTATAGTCAAGAATCCGCGTCTACTAATCTTCTTGGTATCATTGATGTGAAAACCAAAGCAGTTCAAAATTTAAGAGGTAACTAGTGATATCAGAAATTGAGCGAATTTTTTTTGTTTCAGATGCTTTGAAACTAACGACCATCAACCGACTTCTAACCACAAGCTACGATGAGGACGCTAAAAATATAGAAGTTGGTGAAAACCCCGGGAAAAATAACTTATTTCCAAAATATTCGGTGGAAGATAGCCAACTTTGATAGCCTAGAAAAATAGTCCAACATTTTTCAAAATGTCTTAGTCCGTTCAAGAGTATACTAAACAAAAAATTGAAGCCTAATTTTTGCAATTAACAAAAAAATGCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTTTTGTGAGAAATTGAACT</pcr_primer_p1>
		<pcr_primer_p2>CCGGATTATATGATTGATAATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTTTTTGTGAGAAATTGAACTGAGATTGGAGAAGGGAAAATGAAAGTGAAAGAAGTACAGAGCTACAGTAAGACTTCTACGCATTATAAAAGTCTTAGAAATATTAATCTGGATTTTACAATTGTCTGATCTACGAAAACGTCATCTTCATACTGTATTTTTTGTTTATCTTATTTGACTACACATACAACAATCATTTCAGGAAAGAGCCCACTCCAAATATATTCAATTATCAATCATATAATCCGG</canonical_amplicon>
		<polymorphic_amplicon>GCTTTTTGTGAGAAATTGAACTGAGATTGGAGAAGGGAAAATGAAAGTGAAAGAAGTACAGAGCTACAGTAAGACTTCTACGCATTATAAAAGTCTTAGAAATATTAATCTGGATTTTACAATTGTCTGATCTACGAAAACGTCATCTTCATACTGTMTTTTTTGTTTATCTTATTTGACTACACATACAACAATCATTTCAGGAAAGAGCCCACTCCAAATATATTCAATTATCAATCATATAATCCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5772</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>108057</contig_pos>
        <strand>+</strand>
        <context>TGAAACTTAA[C/T]AAAAGCTCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTAAGGCGTGTGGTTAGCATAAACTAGTTTAATTTCCATGAAACTTAA</left_flank>
        <right_flank>AAAAGCTCGAAAGTACATTTTTTAAAATAAAATTTAACATGATATCAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATTCAGCTTTTTTGCGCTAATATTGTATTCATCGAATGACGAAATGTAAAAACGAATCATTTGTAGTTAGATTTAGCAGAATTTCTCAAAATTTCAAATTTCTGGCAGTAAAATATGATGAAAAAACTTTTTTCTAGAAAAATGAGAGATTTAATAGCGGGATCTGCTAATTTTGTTCTTCAAACAAAGCATAGGTTATTTAAATGTACTAAATGTGGAAGGAAATATAATAACAAGTAATTTTAACCAATATTTAGCAGAAACCTCCAAAATTTCTAATTTCTAACAGTTTGTGTTGTTGCAAATGTCTTTTTTTCGAACAATATGGATTTGCAATGCCGGTAGTCTTCTAAAACGACGTTGAGGTTATTTAAGTGTACCAACATGAAAATCTGAAAACTAAACAAATGTCAAATTTAATCTTTTTTTCTGTTGCTTTTTTCATCGTTTTAAGGCGTGTGGTTAGCATAAACTAGTTTAATTTCCATGAAACTTAATAAAAGCTCGAAAGTACATTTTTTAAAATAAAATTTAACATGATATCAAATTGCTTCAAAGTGTTTCTTCACATACTTTAGTCTAAAAAATTATGCAAAACGTGTTCTGTTTTTCAAAAGTGAAATTTACAAAAAAAATTCAAACAGAAATTTCCTGAAATCATTTCGAGTTTCGTATTACCGAATTTCATAAGAATCAAGTACTCAACCGATTACGGCGAACTTTGTCAATATTTAATACTTTTTTTCAATTTTTTTTCTCCTACTTTACCCCACTAACCAACCCTCATTTTTATGTTCTCCTATCAGTTTTTCTTATCACTCGGTTCTCTTTTTCCCTCTCAACGTATGGGCCAATTGGTCACATTTGGACAGAGAACGGAAAGGCCTTGAGAAAAGACTATCCATCAAAATGTCCTTTTCGACAAGTGTCGAAATGAAGGACATAAGCAGAATTATGAAGTTTTACAAATCATCTCATTCATCAATCGCATGTCTTCT</canonical>
            <polymorphic>TTATTCAGCTTTTTTGCGCTAATATTGTATTCATCGAATGACGAAATGTAAAAACGAATCATTTGTAGTTAGATTTAGCAGAATTTCTCAAAATTTCAAATTTCTGGCAGTAAAATATGATGAAAAAACTTTTTTCTAGAAAAATGAGAGATTTAATAGCGGGATCTGCTAATTTTGTTCTTCAAACAAAGCATAGGTTATTTAAATGTACTAAATGTGGAAGGAAATATAATAACAAGTAATTTTAACCAATATTTAGCAGAAACCTCCAAAATTTCTAATTTCTAACAGTTTGTGTTGTTGCAAATGTCTTTTTTTCGAACAATATGGATTTGCAATGCCGGTAGTCTTCTAAAACGACGTTGAGGTTATTTAAGTGTACCAACATGAAAATCTGAAAACTAAACAAATGTCAAATTTAATCTTTTTTTCTGTTGCTTTTTTCATCGTTTTAAGGCGTGTGGTTAGCATAAACTAGTTTAATTTCCATGAAACTTAAYAAAAGCTCGAAAGTACATTTTTTAAAATAAAATTTAACATGATATCAAATTGCTTCAAAGTGTTTCTTCACATACTTTAGTCTAAAAAATTATGCAAAACGTGTTCTGTTTTTCAAAAGTGAAATTTACAAAAAAAATTCAAACAGAAATTTCCTGAAATCATTTCGAGTTTCGTATTACCGAATTTCATAAGAATCAAGTACTCAACCGATTACGGCGAACTTTGTCAATATTTAATACTTTTTTTCAATTTTTTTTCTCCTACTTTACCCCACTAACCAACCCTCATTTTTATGTTCTCCTATCAGTTTTTCTTATCACTCGGTTCTCTTTTTCCCTCTCAACGTATGGGCCAATTGGTCACATTTGGACAGAGAACGGAAAGGCCTTGAGAAAAGACTATCCATCAAAATGTCCTTTTCGACAAGTGTCGAAATGAAGGACATAAGCAGAATTATGAAGTTTTACAAATCATCTCATTCATCAATCGCATGTCTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTGTACCAACATGAAAATCTG</pcr_primer_p1>
		<pcr_primer_p2>TTCACTTTTGAAAAACAGAACAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGTGTACCAACATGAAAATCTGAAAACTAAACAAATGTCAAATTTAATCTTTTTTTCTGTTGCTTTTTTCATCGTTTTAAGGCGTGTGGTTAGCATAAACTAGTTTAATTTCCATGAAACTTAATAAAAGCTCGAAAGTACATTTTTTAAAATAAAATTTAACATGATATCAAATTGCTTCAAAGTGTTTCTTCACATACTTTAGTCTAAAAAATTATGCAAAACGTGTTCTGTTTTTCAAAAGTGAA</canonical_amplicon>
		<polymorphic_amplicon>AAGTGTACCAACATGAAAATCTGAAAACTAAACAAATGTCAAATTTAATCTTTTTTTCTGTTGCTTTTTTCATCGTTTTAAGGCGTGTGGTTAGCATAAACTAGTTTAATTTCCATGAAACTTAAYAAAAGCTCGAAAGTACATTTTTTAAAATAAAATTTAACATGATATCAAATTGCTTCAAAGTGTTTCTTCACATACTTTAGTCTAAAAAATTATGCAAAACGTGTTCTGTTTTTCAAAAGTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5773</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>108039</contig_pos>
        <strand>+</strand>
        <context>AAACTAGTTT[A/G]ATTTCCATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGTTGCTTTTTTCATCGTTTTAAGGCGTGTGGTTAGCATAAACTAGTTT</left_flank>
        <right_flank>ATTTCCATGAAACTTAATAAAAGCTCGAAAGTACATTTTTTAAAATAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCCAGCTATACAATGCTTATTCAGCTTTTTTGCGCTAATATTGTATTCATCGAATGACGAAATGTAAAAACGAATCATTTGTAGTTAGATTTAGCAGAATTTCTCAAAATTTCAAATTTCTGGCAGTAAAATATGATGAAAAAACTTTTTTCTAGAAAAATGAGAGATTTAATAGCGGGATCTGCTAATTTTGTTCTTCAAACAAAGCATAGGTTATTTAAATGTACTAAATGTGGAAGGAAATATAATAACAAGTAATTTTAACCAATATTTAGCAGAAACCTCCAAAATTTCTAATTTCTAACAGTTTGTGTTGTTGCAAATGTCTTTTTTTCGAACAATATGGATTTGCAATGCCGGTAGTCTTCTAAAACGACGTTGAGGTTATTTAAGTGTACCAACATGAAAATCTGAAAACTAAACAAATGTCAAATTTAATCTTTTTTTCTGTTGCTTTTTTCATCGTTTTAAGGCGTGTGGTTAGCATAAACTAGTTTAATTTCCATGAAACTTAATAAAAGCTCGAAAGTACATTTTTTAAAATAAAATTTAACATGATATCAAATTGCTTCAAAGTGTTTCTTCACATACTTTAGTCTAAAAAATTATGCAAAACGTGTTCTGTTTTTCAAAAGTGAAATTTACAAAAAAAATTCAAACAGAAATTTCCTGAAATCATTTCGAGTTTCGTATTACCGAATTTCATAAGAATCAAGTACTCAACCGATTACGGCGAACTTTGTCAATATTTAATACTTTTTTTCAATTTTTTTTCTCCTACTTTACCCCACTAACCAACCCTCATTTTTATGTTCTCCTATCAGTTTTTCTTATCACTCGGTTCTCTTTTTCCCTCTCAACGTATGGGCCAATTGGTCACATTTGGACAGAGAACGGAAAGGCCTTGAGAAAAGACTATCCATCAAAATGTCCTTTTCGACAAGTGTCGAAATGAAGGACATAAGCAGAATTATGAAGTTTTACAAATCATCTCATTC</canonical>
            <polymorphic>TTGCCAGCTATACAATGCTTATTCAGCTTTTTTGCGCTAATATTGTATTCATCGAATGACGAAATGTAAAAACGAATCATTTGTAGTTAGATTTAGCAGAATTTCTCAAAATTTCAAATTTCTGGCAGTAAAATATGATGAAAAAACTTTTTTCTAGAAAAATGAGAGATTTAATAGCGGGATCTGCTAATTTTGTTCTTCAAACAAAGCATAGGTTATTTAAATGTACTAAATGTGGAAGGAAATATAATAACAAGTAATTTTAACCAATATTTAGCAGAAACCTCCAAAATTTCTAATTTCTAACAGTTTGTGTTGTTGCAAATGTCTTTTTTTCGAACAATATGGATTTGCAATGCCGGTAGTCTTCTAAAACGACGTTGAGGTTATTTAAGTGTACCAACATGAAAATCTGAAAACTAAACAAATGTCAAATTTAATCTTTTTTTCTGTTGCTTTTTTCATCGTTTTAAGGCGTGTGGTTAGCATAAACTAGTTTRATTTCCATGAAACTTAATAAAAGCTCGAAAGTACATTTTTTAAAATAAAATTTAACATGATATCAAATTGCTTCAAAGTGTTTCTTCACATACTTTAGTCTAAAAAATTATGCAAAACGTGTTCTGTTTTTCAAAAGTGAAATTTACAAAAAAAATTCAAACAGAAATTTCCTGAAATCATTTCGAGTTTCGTATTACCGAATTTCATAAGAATCAAGTACTCAACCGATTACGGCGAACTTTGTCAATATTTAATACTTTTTTTCAATTTTTTTTCTCCTACTTTACCCCACTAACCAACCCTCATTTTTATGTTCTCCTATCAGTTTTTCTTATCACTCGGTTCTCTTTTTCCCTCTCAACGTATGGGCCAATTGGTCACATTTGGACAGAGAACGGAAAGGCCTTGAGAAAAGACTATCCATCAAAATGTCCTTTTCGACAAGTGTCGAAATGAAGGACATAAGCAGAATTATGAAGTTTTACAAATCATCTCATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>248 200 171 128 49 46 43 33 28 26 16 12</canonical_bands>
                <polymorphic_bands>248 200 171 128 49 46 44 43 33 26 12</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>136 106 99 98 72 70 66 66 49 40 35 35 32 30 17 13 12 10 7 7</canonical_bands>
                <polymorphic_bands>136 115 106 99 98 72 70 66 40 35 35 32 30 17 13 12 10 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTGTACCAACATGAAAATCTG</pcr_primer_p1>
		<pcr_primer_p2>TTCACTTTTGAAAAACAGAACAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGTGTACCAACATGAAAATCTGAAAACTAAACAAATGTCAAATTTAATCTTTTTTTCTGTTGCTTTTTTCATCGTTTTAAGGCGTGTGGTTAGCATAAACTAGTTTAATTTCCATGAAACTTAATAAAAGCTCGAAAGTACATTTTTTAAAATAAAATTTAACATGATATCAAATTGCTTCAAAGTGTTTCTTCACATACTTTAGTCTAAAAAATTATGCAAAACGTGTTCTGTTTTTCAAAAGTGAA</canonical_amplicon>
		<polymorphic_amplicon>AAGTGTACCAACATGAAAATCTGAAAACTAAACAAATGTCAAATTTAATCTTTTTTTCTGTTGCTTTTTTCATCGTTTTAAGGCGTGTGGTTAGCATAAACTAGTTTRATTTCCATGAAACTTAATAAAAGCTCGAAAGTACATTTTTTAAAATAAAATTTAACATGATATCAAATTGCTTCAAAGTGTTTCTTCACATACTTTAGTCTAAAAAATTATGCAAAACGTGTTCTGTTTTTCAAAAGTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5774</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>107837</contig_pos>
        <strand>+</strand>
        <context>CAAAATTTCT[A/C]ATTTCTAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAATAACAAGTAATTTTAACCAATATTTAGCAGAAACCTCCAAAATTTCT</left_flank>
        <right_flank>ATTTCTAACAGTTTGTGTTGTTGCAAATGTCTTTTTTTCGAACAATATGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATTTTGCTTTGAAAGCGAGGGAAATTCAAAAATAATCATTGCGAGCCAATTTAATTATCAGCGCATTTCGTAATTGATGTTTTTCATCTTTTTTTTTTGTTTTTCGAAATGTGGTTTTGTGTTTTTTTTTGTGTCTGAAAAATGTGTTCACTAGTTTTTTTTGTAGGTTTTCCCGTTTTTGTGCATTCAAAATTGGCTTCTTGCCAGCTATACAATGCTTATTCAGCTTTTTTGCGCTAATATTGTATTCATCGAATGACGAAATGTAAAAACGAATCATTTGTAGTTAGATTTAGCAGAATTTCTCAAAATTTCAAATTTCTGGCAGTAAAATATGATGAAAAAACTTTTTTCTAGAAAAATGAGAGATTTAATAGCGGGATCTGCTAATTTTGTTCTTCAAACAAAGCATAGGTTATTTAAATGTACTAAATGTGGAAGGAAATATAATAACAAGTAATTTTAACCAATATTTAGCAGAAACCTCCAAAATTTCTAATTTCTAACAGTTTGTGTTGTTGCAAATGTCTTTTTTTCGAACAATATGGATTTGCAATGCCGGTAGTCTTCTAAAACGACGTTGAGGTTATTTAAGTGTACCAACATGAAAATCTGAAAACTAAACAAATGTCAAATTTAATCTTTTTTTCTGTTGCTTTTTTCATCGTTTTAAGGCGTGTGGTTAGCATAAACTAGTTTAATTTCCATGAAACTTAATAAAAGCTCGAAAGTACATTTTTTAAAATAAAATTTAACATGATATCAAATTGCTTCAAAGTGTTTCTTCACATACTTTAGTCTAAAAAATTATGCAAAACGTGTTCTGTTTTTCAAAAGTGAAATTTACAAAAAAAATTCAAACAGAAATTTCCTGAAATCATTTCGAGTTTCGTATTACCGAATTTCATAAGAATCAAGTACTCAACCGATTACGGCGAACTTTGTCAATATTTAATACTTTTTTTCAATTTTTTTTCTCCTACTTTACCCCACTAACC</canonical>
            <polymorphic>GTATTTTGCTTTGAAAGCGAGGGAAATTCAAAAATAATCATTGCGAGCCAATTTAATTATCAGCGCATTTCGTAATTGATGTTTTTCATCTTTTTTTTTTGTTTTTCGAAATGTGGTTTTGTGTTTTTTTTTGTGTCTGAAAAATGTGTTCACTAGTTTTTTTTGTAGGTTTTCCCGTTTTTGTGCATTCAAAATTGGCTTCTTGCCAGCTATACAATGCTTATTCAGCTTTTTTGCGCTAATATTGTATTCATCGAATGACGAAATGTAAAAACGAATCATTTGTAGTTAGATTTAGCAGAATTTCTCAAAATTTCAAATTTCTGGCAGTAAAATATGATGAAAAAACTTTTTTCTAGAAAAATGAGAGATTTAATAGCGGGATCTGCTAATTTTGTTCTTCAAACAAAGCATAGGTTATTTAAATGTACTAAATGTGGAAGGAAATATAATAACAAGTAATTTTAACCAATATTTAGCAGAAACCTCCAAAATTTCTMATTTCTAACAGTTTGTGTTGTTGCAAATGTCTTTTTTTCGAACAATATGGATTTGCAATGCCGGTAGTCTTCTAAAACGACGTTGAGGTTATTTAAGTGTACCAACATGAAAATCTGAAAACTAAACAAATGTCAAATTTAATCTTTTTTTCTGTTGCTTTTTTCATCGTTTTAAGGCGTGTGGTTAGCATAAACTAGTTTAATTTCCATGAAACTTAATAAAAGCTCGAAAGTACATTTTTTAAAATAAAATTTAACATGATATCAAATTGCTTCAAAGTGTTTCTTCACATACTTTAGTCTAAAAAATTATGCAAAACGTGTTCTGTTTTTCAAAAGTGAAATTTACAAAAAAAATTCAAACAGAAATTTCCTGAAATCATTTCGAGTTTCGTATTACCGAATTTCATAAGAATCAAGTACTCAACCGATTACGGCGAACTTTGTCAATATTTAATACTTTTTTTCAATTTTTTTTCTCCTACTTTACCCCACTAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>136 119 109 72 70 66 66 49 40 35 35 32 32 25 24 19 17 13 12 10 7 7 5</canonical_bands>
                <polymorphic_bands>143 119 109 72 70 66 66 49 40 35 35 32 32 25 24 19 17 13 12 10 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGCTAATTTTGTTCTTCAAAC</pcr_primer_p1>
		<pcr_primer_p2>TGACATTTGTTTAGTTTTCAGATT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTGCTAATTTTGTTCTTCAAACAAAGCATAGGTTATTTAAATGTACTAAATGTGGAAGGAAATATAATAACAAGTAATTTTAACCAATATTTAGCAGAAACCTCCAAAATTTCTAATTTCTAACAGTTTGTGTTGTTGCAAATGTCTTTTTTTCGAACAATATGGATTTGCAATGCCGGTAGTCTTCTAAAACGACGTTGAGGTTATTTAAGTGTACCAACATGAAAATCTGAAAACTAAACAAATGTCA</canonical_amplicon>
		<polymorphic_amplicon>TCTGCTAATTTTGTTCTTCAAACAAAGCATAGGTTATTTAAATGTACTAAATGTGGAAGGAAATATAATAACAAGTAATTTTAACCAATATTTAGCAGAAACCTCCAAAATTTCTMATTTCTAACAGTTTGTGTTGTTGCAAATGTCTTTTTTTCGAACAATATGGATTTGCAATGCCGGTAGTCTTCTAAAACGACGTTGAGGTTATTTAAGTGTACCAACATGAAAATCTGAAAACTAAACAAATGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5775</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>107817</contig_pos>
        <strand>+</strand>
        <context>CAATATTTAK[C/G]AGAAACCTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACTAAATGTGGAAGGAAATATAATAACAAGTAATTTTAACCAATATTTAG</left_flank>
        <right_flank>AGAAACCTCCAAAATTTCTAATTTCTAACAGTTTGTGTTGTTGCAAATGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTAGCTAAATAATTTATTCGTATTTTGCTTTGAAAGCGAGGGAAATTCAAAAATAATCATTGCGAGCCAATTTAATTATCAGCGCATTTCGTAATTGATGTTTTTCATCTTTTTTTTTTGTTTTTCGAAATGTGGTTTTGTGTTTTTTTTTGTGTCTGAAAAATGTGTTCACTAGTTTTTTTTGTAGGTTTTCCCGTTTTTGTGCATTCAAAATTGGCTTCTTGCCAGCTATACAATGCTTATTCAGCTTTTTTGCGCTAATATTGTATTCATCGAATGACGAAATGTAAAAACGAATCATTTGTAGTTAGATTTAGCAGAATTTCTCAAAATTTCAAATTTCTGGCAGTAAAATATGATGAAAAAACTTTTTTCTAGAAAAATGAGAGATTTAATAGCGGGATCTGCTAATTTTGTTCTTCAAACAAAGCATAGGTTATTTAAATGTACTAAATGTGGAAGGAAATATAATAACAAGTAATTTTAACCAATATTTAGCAGAAACCTCCAAAATTTCTAATTTCTAACAGTTTGTGTTGTTGCAAATGTCTTTTTTTCGAACAATATGGATTTGCAATGCCGGTAGTCTTCTAAAACGACGTTGAGGTTATTTAAGTGTACCAACATGAAAATCTGAAAACTAAACAAATGTCAAATTTAATCTTTTTTTCTGTTGCTTTTTTCATCGTTTTAAGGCGTGTGGTTAGCATAAACTAGTTTAATTTCCATGAAACTTAATAAAAGCTCGAAAGTACATTTTTTAAAATAAAATTTAACATGATATCAAATTGCTTCAAAGTGTTTCTTCACATACTTTAGTCTAAAAAATTATGCAAAACGTGTTCTGTTTTTCAAAAGTGAAATTTACAAAAAAAATTCAAACAGAAATTTCCTGAAATCATTTCGAGTTTCGTATTACCGAATTTCATAAGAATCAAGTACTCAACCGATTACGGCGAACTTTGTCAATATTTAATACTTTTTTTCAATTTTTTTTCT</canonical>
            <polymorphic>GCTAGCTAAATAATTTATTCGTATTTTGCTTTGAAAGCGAGGGAAATTCAAAAATAATCATTGCGAGCCAATTTAATTATCAGCGCATTTCGTAATTGATGTTTTTCATCTTTTTTTTTTGTTTTTCGAAATGTGGTTTTGTGTTTTTTTTTGTGTCTGAAAAATGTGTTCACTAGTTTTTTTTGTAGGTTTTCCCGTTTTTGTGCATTCAAAATTGGCTTCTTGCCAGCTATACAATGCTTATTCAGCTTTTTTGCGCTAATATTGTATTCATCGAATGACGAAATGTAAAAACGAATCATTTGTAGTTAGATTTAGCAGAATTTCTCAAAATTTCAAATTTCTGGCAGTAAAATATGATGAAAAAACTTTTTTCTAGAAAAATGAGAGATTTAATAGCGGGATCTGCTAATTTTGTTCTTCAAACAAAGCATAGGTTATTTAAATGTACTAAATGTGGAAGGAAATATAATAACAAGTAATTTTAACCAATATTTAGSAGAAACCTCCAAAATTTCTAATTTCTAACAGTTTGTGTTGTTGCAAATGTCTTTTTTTCGAACAATATGGATTTGCAATGCCGGTAGTCTTCTAAAACGACGTTGAGGTTATTTAAGTGTACCAACATGAAAATCTGAAAACTAAACAAATGTCAAATTTAATCTTTTTTTCTGTTGCTTTTTTCATCGTTTTAAGGCGTGTGGTTAGCATAAACTAGTTTAATTTCCATGAAACTTAATAAAAGCTCGAAAGTACATTTTTTAAAATAAAATTTAACATGATATCAAATTGCTTCAAAGTGTTTCTTCACATACTTTAGTCTAAAAAATTATGCAAAACGTGTTCTGTTTTTCAAAAGTGAAATTTACAAAAAAAATTCAAACAGAAATTTCCTGAAATCATTTCGAGTTTCGTATTACCGAATTTCATAAGAATCAAGTACTCAACCGATTACGGCGAACTTTGTCAATATTTAATACTTTTTTTCAATTTTTTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGCTAATTTTGTTCTTCAAAC</pcr_primer_p1>
		<pcr_primer_p2>TGACATTTGTTTAGTTTTCAGATT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTGCTAATTTTGTTCTTCAAACAAAGCATAGGTTATTTAAATGTACTAAATGTGGAAGGAAATATAATAACAAGTAATTTTAACCAATATTTAGCAGAAACCTCCAAAATTTCTAATTTCTAACAGTTTGTGTTGTTGCAAATGTCTTTTTTTCGAACAATATGGATTTGCAATGCCGGTAGTCTTCTAAAACGACGTTGAGGTTATTTAAGTGTACCAACATGAAAATCTGAAAACTAAACAAATGTCA</canonical_amplicon>
		<polymorphic_amplicon>TCTGCTAATTTTGTTCTTCAAACAAAGCATAGGTTATTTAAATGTACTAAATGTGGAAGGAAATATAATAACAAGTAATTTTAACCAATATTTAGSAGAAACCTCCAAAATTTCTAATTTCTAACAGTTTGTGTTGTTGCAAATGTCTTTTTTTCGAACAATATGGATTTGCAATGCCGGTAGTCTTCTAAAACGACGTTGAGGTTATTTAAGTGTACCAACATGAAAATCTGAAAACTAAACAAATGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5776</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>107816</contig_pos>
        <strand>+</strand>
        <context>CCAATATTTA[G/T]SAGAAACCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TACTAAATGTGGAAGGAAATATAATAACAAGTAATTTTAACCAATATTTA</left_flank>
        <right_flank>CAGAAACCTCCAAAATTTCTAATTTCTAACAGTTTGTGTTGTTGCAAATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTAGCTAAATAATTTATTCGTATTTTGCTTTGAAAGCGAGGGAAATTCAAAAATAATCATTGCGAGCCAATTTAATTATCAGCGCATTTCGTAATTGATGTTTTTCATCTTTTTTTTTTGTTTTTCGAAATGTGGTTTTGTGTTTTTTTTTGTGTCTGAAAAATGTGTTCACTAGTTTTTTTTGTAGGTTTTCCCGTTTTTGTGCATTCAAAATTGGCTTCTTGCCAGCTATACAATGCTTATTCAGCTTTTTTGCGCTAATATTGTATTCATCGAATGACGAAATGTAAAAACGAATCATTTGTAGTTAGATTTAGCAGAATTTCTCAAAATTTCAAATTTCTGGCAGTAAAATATGATGAAAAAACTTTTTTCTAGAAAAATGAGAGATTTAATAGCGGGATCTGCTAATTTTGTTCTTCAAACAAAGCATAGGTTATTTAAATGTACTAAATGTGGAAGGAAATATAATAACAAGTAATTTTAACCAATATTTAGCAGAAACCTCCAAAATTTCTAATTTCTAACAGTTTGTGTTGTTGCAAATGTCTTTTTTTCGAACAATATGGATTTGCAATGCCGGTAGTCTTCTAAAACGACGTTGAGGTTATTTAAGTGTACCAACATGAAAATCTGAAAACTAAACAAATGTCAAATTTAATCTTTTTTTCTGTTGCTTTTTTCATCGTTTTAAGGCGTGTGGTTAGCATAAACTAGTTTAATTTCCATGAAACTTAATAAAAGCTCGAAAGTACATTTTTTAAAATAAAATTTAACATGATATCAAATTGCTTCAAAGTGTTTCTTCACATACTTTAGTCTAAAAAATTATGCAAAACGTGTTCTGTTTTTCAAAAGTGAAATTTACAAAAAAAATTCAAACAGAAATTTCCTGAAATCATTTCGAGTTTCGTATTACCGAATTTCATAAGAATCAAGTACTCAACCGATTACGGCGAACTTTGTCAATATTTAATACTTTTTTTCAATTTTTTTTC</canonical>
            <polymorphic>AGCTAGCTAAATAATTTATTCGTATTTTGCTTTGAAAGCGAGGGAAATTCAAAAATAATCATTGCGAGCCAATTTAATTATCAGCGCATTTCGTAATTGATGTTTTTCATCTTTTTTTTTTGTTTTTCGAAATGTGGTTTTGTGTTTTTTTTTGTGTCTGAAAAATGTGTTCACTAGTTTTTTTTGTAGGTTTTCCCGTTTTTGTGCATTCAAAATTGGCTTCTTGCCAGCTATACAATGCTTATTCAGCTTTTTTGCGCTAATATTGTATTCATCGAATGACGAAATGTAAAAACGAATCATTTGTAGTTAGATTTAGCAGAATTTCTCAAAATTTCAAATTTCTGGCAGTAAAATATGATGAAAAAACTTTTTTCTAGAAAAATGAGAGATTTAATAGCGGGATCTGCTAATTTTGTTCTTCAAACAAAGCATAGGTTATTTAAATGTACTAAATGTGGAAGGAAATATAATAACAAGTAATTTTAACCAATATTTAKCAGAAACCTCCAAAATTTCTAATTTCTAACAGTTTGTGTTGTTGCAAATGTCTTTTTTTCGAACAATATGGATTTGCAATGCCGGTAGTCTTCTAAAACGACGTTGAGGTTATTTAAGTGTACCAACATGAAAATCTGAAAACTAAACAAATGTCAAATTTAATCTTTTTTTCTGTTGCTTTTTTCATCGTTTTAAGGCGTGTGGTTAGCATAAACTAGTTTAATTTCCATGAAACTTAATAAAAGCTCGAAAGTACATTTTTTAAAATAAAATTTAACATGATATCAAATTGCTTCAAAGTGTTTCTTCACATACTTTAGTCTAAAAAATTATGCAAAACGTGTTCTGTTTTTCAAAAGTGAAATTTACAAAAAAAATTCAAACAGAAATTTCCTGAAATCATTTCGAGTTTCGTATTACCGAATTTCATAAGAATCAAGTACTCAACCGATTACGGCGAACTTTGTCAATATTTAATACTTTTTTTCAATTTTTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGCTAATTTTGTTCTTCAAAC</pcr_primer_p1>
		<pcr_primer_p2>TGACATTTGTTTAGTTTTCAGATT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTGCTAATTTTGTTCTTCAAACAAAGCATAGGTTATTTAAATGTACTAAATGTGGAAGGAAATATAATAACAAGTAATTTTAACCAATATTTAGCAGAAACCTCCAAAATTTCTAATTTCTAACAGTTTGTGTTGTTGCAAATGTCTTTTTTTCGAACAATATGGATTTGCAATGCCGGTAGTCTTCTAAAACGACGTTGAGGTTATTTAAGTGTACCAACATGAAAATCTGAAAACTAAACAAATGTCA</canonical_amplicon>
		<polymorphic_amplicon>TCTGCTAATTTTGTTCTTCAAACAAAGCATAGGTTATTTAAATGTACTAAATGTGGAAGGAAATATAATAACAAGTAATTTTAACCAATATTTAKCAGAAACCTCCAAAATTTCTAATTTCTAACAGTTTGTGTTGTTGCAAATGTCTTTTTTTCGAACAATATGGATTTGCAATGCCGGTAGTCTTCTAAAACGACGTTGAGGTTATTTAAGTGTACCAACATGAAAATCTGAAAACTAAACAAATGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5777</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>107790</contig_pos>
        <strand>+</strand>
        <context>GGAAATATAA[G/T]AACAAGTAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAAACAAAGCATAGGTTATTTAAATGTACTAAATGTGGAAGGAAATATAA</left_flank>
        <right_flank>AACAAGTAATTTTAACCAATATTTAGCAGAAACCTCCAAAATTTCTAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCCAAATATATATTTTTTTTCCAAGCTAGCTAAATAATTTATTCGTATTTTGCTTTGAAAGCGAGGGAAATTCAAAAATAATCATTGCGAGCCAATTTAATTATCAGCGCATTTCGTAATTGATGTTTTTCATCTTTTTTTTTTGTTTTTCGAAATGTGGTTTTGTGTTTTTTTTTGTGTCTGAAAAATGTGTTCACTAGTTTTTTTTGTAGGTTTTCCCGTTTTTGTGCATTCAAAATTGGCTTCTTGCCAGCTATACAATGCTTATTCAGCTTTTTTGCGCTAATATTGTATTCATCGAATGACGAAATGTAAAAACGAATCATTTGTAGTTAGATTTAGCAGAATTTCTCAAAATTTCAAATTTCTGGCAGTAAAATATGATGAAAAAACTTTTTTCTAGAAAAATGAGAGATTTAATAGCGGGATCTGCTAATTTTGTTCTTCAAACAAAGCATAGGTTATTTAAATGTACTAAATGTGGAAGGAAATATAATAACAAGTAATTTTAACCAATATTTAGCAGAAACCTCCAAAATTTCTAATTTCTAACAGTTTGTGTTGTTGCAAATGTCTTTTTTTCGAACAATATGGATTTGCAATGCCGGTAGTCTTCTAAAACGACGTTGAGGTTATTTAAGTGTACCAACATGAAAATCTGAAAACTAAACAAATGTCAAATTTAATCTTTTTTTCTGTTGCTTTTTTCATCGTTTTAAGGCGTGTGGTTAGCATAAACTAGTTTAATTTCCATGAAACTTAATAAAAGCTCGAAAGTACATTTTTTAAAATAAAATTTAACATGATATCAAATTGCTTCAAAGTGTTTCTTCACATACTTTAGTCTAAAAAATTATGCAAAACGTGTTCTGTTTTTCAAAAGTGAAATTTACAAAAAAAATTCAAACAGAAATTTCCTGAAATCATTTCGAGTTTCGTATTACCGAATTTCATAAGAATCAAGTACTCAACCGATTACGGCGAACTTTGTCAATAT</canonical>
            <polymorphic>AATTCCAAATATATATTTTTTTTCCAAGCTAGCTAAATAATTTATTCGTATTTTGCTTTGAAAGCGAGGGAAATTCAAAAATAATCATTGCGAGCCAATTTAATTATCAGCGCATTTCGTAATTGATGTTTTTCATCTTTTTTTTTTGTTTTTCGAAATGTGGTTTTGTGTTTTTTTTTGTGTCTGAAAAATGTGTTCACTAGTTTTTTTTGTAGGTTTTCCCGTTTTTGTGCATTCAAAATTGGCTTCTTGCCAGCTATACAATGCTTATTCAGCTTTTTTGCGCTAATATTGTATTCATCGAATGACGAAATGTAAAAACGAATCATTTGTAGTTAGATTTAGCAGAATTTCTCAAAATTTCAAATTTCTGGCAGTAAAATATGATGAAAAAACTTTTTTCTAGAAAAATGAGAGATTTAATAGCGGGATCTGCTAATTTTGTTCTTCAAACAAAGCATAGGTTATTTAAATGTACTAAATGTGGAAGGAAATATAAKAACAAGTAATTTTAACCAATATTTAGCAGAAACCTCCAAAATTTCTAATTTCTAACAGTTTGTGTTGTTGCAAATGTCTTTTTTTCGAACAATATGGATTTGCAATGCCGGTAGTCTTCTAAAACGACGTTGAGGTTATTTAAGTGTACCAACATGAAAATCTGAAAACTAAACAAATGTCAAATTTAATCTTTTTTTCTGTTGCTTTTTTCATCGTTTTAAGGCGTGTGGTTAGCATAAACTAGTTTAATTTCCATGAAACTTAATAAAAGCTCGAAAGTACATTTTTTAAAATAAAATTTAACATGATATCAAATTGCTTCAAAGTGTTTCTTCACATACTTTAGTCTAAAAAATTATGCAAAACGTGTTCTGTTTTTCAAAAGTGAAATTTACAAAAAAAATTCAAACAGAAATTTCCTGAAATCATTTCGAGTTTCGTATTACCGAATTTCATAAGAATCAAGTACTCAACCGATTACGGCGAACTTTGTCAATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGCTAATTTTGTTCTTCAAAC</pcr_primer_p1>
		<pcr_primer_p2>TGACATTTGTTTAGTTTTCAGATT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTGCTAATTTTGTTCTTCAAACAAAGCATAGGTTATTTAAATGTACTAAATGTGGAAGGAAATATAATAACAAGTAATTTTAACCAATATTTAGCAGAAACCTCCAAAATTTCTAATTTCTAACAGTTTGTGTTGTTGCAAATGTCTTTTTTTCGAACAATATGGATTTGCAATGCCGGTAGTCTTCTAAAACGACGTTGAGGTTATTTAAGTGTACCAACATGAAAATCTGAAAACTAAACAAATGTCA</canonical_amplicon>
		<polymorphic_amplicon>TCTGCTAATTTTGTTCTTCAAACAAAGCATAGGTTATTTAAATGTACTAAATGTGGAAGGAAATATAAKAACAAGTAATTTTAACCAATATTTAGCAGAAACCTCCAAAATTTCTAATTTCTAACAGTTTGTGTTGTTGCAAATGTCTTTTTTTCGAACAATATGGATTTGCAATGCCGGTAGTCTTCTAAAACGACGTTGAGGTTATTTAAGTGTACCAACATGAAAATCTGAAAACTAAACAAATGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5778</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>107682</contig_pos>
        <strand>+</strand>
        <context>ATATGATGAA[A/G]AAACTTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAGCAGAATTTCTCAAAATTTCAAATTTCTGGCAGTAAAATATGATGAA</left_flank>
        <right_flank>AAACTTTTTTCTAGAAAAATGAGAGATTTAATAGCGGGATCTGCTAATTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTTTTTTTCTCTGTGGCCATAGAACTGCGGCTCTTTTTTTCCTGAATTTTGTTTTGTGTTGCTTCTCATTTGTTTTTTCAGCCAAAATTGTAAAACTAAAAGCGAAAATTCCAAATATATATTTTTTTTCCAAGCTAGCTAAATAATTTATTCGTATTTTGCTTTGAAAGCGAGGGAAATTCAAAAATAATCATTGCGAGCCAATTTAATTATCAGCGCATTTCGTAATTGATGTTTTTCATCTTTTTTTTTTGTTTTTCGAAATGTGGTTTTGTGTTTTTTTTTGTGTCTGAAAAATGTGTTCACTAGTTTTTTTTGTAGGTTTTCCCGTTTTTGTGCATTCAAAATTGGCTTCTTGCCAGCTATACAATGCTTATTCAGCTTTTTTGCGCTAATATTGTATTCATCGAATGACGAAATGTAAAAACGAATCATTTGTAGTTAGATTTAGCAGAATTTCTCAAAATTTCAAATTTCTGGCAGTAAAATATGATGAAAAAACTTTTTTCTAGAAAAATGAGAGATTTAATAGCGGGATCTGCTAATTTTGTTCTTCAAACAAAGCATAGGTTATTTAAATGTACTAAATGTGGAAGGAAATATAATAACAAGTAATTTTAACCAATATTTAGCAGAAACCTCCAAAATTTCTAATTTCTAACAGTTTGTGTTGTTGCAAATGTCTTTTTTTCGAACAATATGGATTTGCAATGCCGGTAGTCTTCTAAAACGACGTTGAGGTTATTTAAGTGTACCAACATGAAAATCTGAAAACTAAACAAATGTCAAATTTAATCTTTTTTTCTGTTGCTTTTTTCATCGTTTTAAGGCGTGTGGTTAGCATAAACTAGTTTAATTTCCATGAAACTTAATAAAAGCTCGAAAGTACATTTTTTAAAATAAAATTTAACATGATATCAAATTGCTTCAAAGTGTTTCTTCACATACTTTAGTCTAAAAAATTATGCAAAACGTGTTCTGTTTTTCAAAAGTGAAAT</canonical>
            <polymorphic>CTCTTTTTTTCTCTGTGGCCATAGAACTGCGGCTCTTTTTTTCCTGAATTTTGTTTTGTGTTGCTTCTCATTTGTTTTTTCAGCCAAAATTGTAAAACTAAAAGCGAAAATTCCAAATATATATTTTTTTTCCAAGCTAGCTAAATAATTTATTCGTATTTTGCTTTGAAAGCGAGGGAAATTCAAAAATAATCATTGCGAGCCAATTTAATTATCAGCGCATTTCGTAATTGATGTTTTTCATCTTTTTTTTTTGTTTTTCGAAATGTGGTTTTGTGTTTTTTTTTGTGTCTGAAAAATGTGTTCACTAGTTTTTTTTGTAGGTTTTCCCGTTTTTGTGCATTCAAAATTGGCTTCTTGCCAGCTATACAATGCTTATTCAGCTTTTTTGCGCTAATATTGTATTCATCGAATGACGAAATGTAAAAACGAATCATTTGTAGTTAGATTTAGCAGAATTTCTCAAAATTTCAAATTTCTGGCAGTAAAATATGATGAARAAACTTTTTTCTAGAAAAATGAGAGATTTAATAGCGGGATCTGCTAATTTTGTTCTTCAAACAAAGCATAGGTTATTTAAATGTACTAAATGTGGAAGGAAATATAATAACAAGTAATTTTAACCAATATTTAGCAGAAACCTCCAAAATTTCTAATTTCTAACAGTTTGTGTTGTTGCAAATGTCTTTTTTTCGAACAATATGGATTTGCAATGCCGGTAGTCTTCTAAAACGACGTTGAGGTTATTTAAGTGTACCAACATGAAAATCTGAAAACTAAACAAATGTCAAATTTAATCTTTTTTTCTGTTGCTTTTTTCATCGTTTTAAGGCGTGTGGTTAGCATAAACTAGTTTAATTTCCATGAAACTTAATAAAAGCTCGAAAGTACATTTTTTAAAATAAAATTTAACATGATATCAAATTGCTTCAAAGTGTTTCTTCACATACTTTAGTCTAAAAAATTATGCAAAACGTGTTCTGTTTTTCAAAAGTGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGCTATACAATGCTTATTCAG</pcr_primer_p1>
		<pcr_primer_p2>TTTCCTTCCACATTTAGTACATT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CCAGCTATACAATGCTTATTCAGCTTTTTTGCGCTAATATTGTATTCATCGAATGACGAAATGTAAAAACGAATCATTTGTAGTTAGATTTAGCAGAATTTCTCAAAATTTCAAATTTCTGGCAGTAAAATATGATGAAAAAACTTTTTTCTAGAAAAATGAGAGATTTAATAGCGGGATCTGCTAATTTTGTTCTTCAAACAAAGCATAGGTTATTTAAATGTACTAAATGTGGAAGGAAA</canonical_amplicon>
		<polymorphic_amplicon>CCAGCTATACAATGCTTATTCAGCTTTTTTGCGCTAATATTGTATTCATCGAATGACGAAATGTAAAAACGAATCATTTGTAGTTAGATTTAGCAGAATTTCTCAAAATTTCAAATTTCTGGCAGTAAAATATGATGAARAAACTTTTTTCTAGAAAAATGAGAGATTTAATAGCGGGATCTGCTAATTTTGTTCTTCAAACAAAGCATAGGTTATTTAAATGTACTAAATGTGGAAGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5779</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>107622</contig_pos>
        <strand>+</strand>
        <context>CGAATCATTT[G/T]TAGTTAGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGCGCTAATATTGTATTCATCGAATGACGAAATGTAAAAACGAATCATTT</left_flank>
        <right_flank>TAGTTAGATTTAGCAGAATTTCTCAAAATTTCAAATTTCTGGCAGTAAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTATCTTTCCACCTTCTGCATTCTACTTTCCTCTCTCTTTCTTTGTCACTCTCTATGTCTCTTTTTTTCTCTGTGGCCATAGAACTGCGGCTCTTTTTTTCCTGAATTTTGTTTTGTGTTGCTTCTCATTTGTTTTTTCAGCCAAAATTGTAAAACTAAAAGCGAAAATTCCAAATATATATTTTTTTTCCAAGCTAGCTAAATAATTTATTCGTATTTTGCTTTGAAAGCGAGGGAAATTCAAAAATAATCATTGCGAGCCAATTTAATTATCAGCGCATTTCGTAATTGATGTTTTTCATCTTTTTTTTTTGTTTTTCGAAATGTGGTTTTGTGTTTTTTTTTGTGTCTGAAAAATGTGTTCACTAGTTTTTTTTGTAGGTTTTCCCGTTTTTGTGCATTCAAAATTGGCTTCTTGCCAGCTATACAATGCTTATTCAGCTTTTTTGCGCTAATATTGTATTCATCGAATGACGAAATGTAAAAACGAATCATTTGTAGTTAGATTTAGCAGAATTTCTCAAAATTTCAAATTTCTGGCAGTAAAATATGATGAAAAAACTTTTTTCTAGAAAAATGAGAGATTTAATAGCGGGATCTGCTAATTTTGTTCTTCAAACAAAGCATAGGTTATTTAAATGTACTAAATGTGGAAGGAAATATAATAACAAGTAATTTTAACCAATATTTAGCAGAAACCTCCAAAATTTCTAATTTCTAACAGTTTGTGTTGTTGCAAATGTCTTTTTTTCGAACAATATGGATTTGCAATGCCGGTAGTCTTCTAAAACGACGTTGAGGTTATTTAAGTGTACCAACATGAAAATCTGAAAACTAAACAAATGTCAAATTTAATCTTTTTTTCTGTTGCTTTTTTCATCGTTTTAAGGCGTGTGGTTAGCATAAACTAGTTTAATTTCCATGAAACTTAATAAAAGCTCGAAAGTACATTTTTTAAAATAAAATTTAACATGATATCAAATTGCTTCAAAGTGTTT</canonical>
            <polymorphic>TCCTATCTTTCCACCTTCTGCATTCTACTTTCCTCTCTCTTTCTTTGTCACTCTCTATGTCTCTTTTTTTCTCTGTGGCCATAGAACTGCGGCTCTTTTTTTCCTGAATTTTGTTTTGTGTTGCTTCTCATTTGTTTTTTCAGCCAAAATTGTAAAACTAAAAGCGAAAATTCCAAATATATATTTTTTTTCCAAGCTAGCTAAATAATTTATTCGTATTTTGCTTTGAAAGCGAGGGAAATTCAAAAATAATCATTGCGAGCCAATTTAATTATCAGCGCATTTCGTAATTGATGTTTTTCATCTTTTTTTTTTGTTTTTCGAAATGTGGTTTTGTGTTTTTTTTTGTGTCTGAAAAATGTGTTCACTAGTTTTTTTTGTAGGTTTTCCCGTTTTTGTGCATTCAAAATTGGCTTCTTGCCAGCTATACAATGCTTATTCAGCTTTTTTGCGCTAATATTGTATTCATCGAATGACGAAATGTAAAAACGAATCATTTKTAGTTAGATTTAGCAGAATTTCTCAAAATTTCAAATTTCTGGCAGTAAAATATGATGAAAAAACTTTTTTCTAGAAAAATGAGAGATTTAATAGCGGGATCTGCTAATTTTGTTCTTCAAACAAAGCATAGGTTATTTAAATGTACTAAATGTGGAAGGAAATATAATAACAAGTAATTTTAACCAATATTTAGCAGAAACCTCCAAAATTTCTAATTTCTAACAGTTTGTGTTGTTGCAAATGTCTTTTTTTCGAACAATATGGATTTGCAATGCCGGTAGTCTTCTAAAACGACGTTGAGGTTATTTAAGTGTACCAACATGAAAATCTGAAAACTAAACAAATGTCAAATTTAATCTTTTTTTCTGTTGCTTTTTTCATCGTTTTAAGGCGTGTGGTTAGCATAAACTAGTTTAATTTCCATGAAACTTAATAAAAGCTCGAAAGTACATTTTTTAAAATAAAATTTAACATGATATCAAATTGCTTCAAAGTGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTCTGAAAAATGTGTTCACTA</pcr_primer_p1>
		<pcr_primer_p2>CCGCTATTAAATCTCTCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGTCTGAAAAATGTGTTCACTAGTTTTTTTTGTAGGTTTTCCCGTTTTTGTGCATTCAAAATTGGCTTCTTGCCAGCTATACAATGCTTATTCAGCTTTTTTGCGCTAATATTGTATTCATCGAATGACGAAATGTAAAAACGAATCATTTGTAGTTAGATTTAGCAGAATTTCTCAAAATTTCAAATTTCTGGCAGTAAAATATGATGAAAAAACTTTTTTCTAGAAAAATGAGAGATTTAATAGCGG</canonical_amplicon>
		<polymorphic_amplicon>GTGTCTGAAAAATGTGTTCACTAGTTTTTTTTGTAGGTTTTCCCGTTTTTGTGCATTCAAAATTGGCTTCTTGCCAGCTATACAATGCTTATTCAGCTTTTTTGCGCTAATATTGTATTCATCGAATGACGAAATGTAAAAACGAATCATTTKTAGTTAGATTTAGCAGAATTTCTCAAAATTTCAAATTTCTGGCAGTAAAATATGATGAAAAAACTTTTTTCTAGAAAAATGAGAGATTTAATAGCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5780</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>111090</contig_pos>
        <strand>+</strand>
        <context>TCATCAACTT[G/T]GAAAAAACGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAAACGCGAAACTCATTTTTCAATGATCTGATATTATTCTTCATCAACTT</left_flank>
        <right_flank>GAAAAAACGACAACAGTTAAAGAAAAAAGACCGGGGGTCACTTACACTAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCACCGAAAATTTACCATGGTCACTACCATCGCAAACTAAATCTGGTGGTATTAGGGTAACTATCACTGCGATGAAAATATTCGAAAAATAATAAGTACAAGCAAAATAAGTCAAATTTTTATCTTAGTTATTGGAGATAATTGTTTTTGCAAAAAAAAAGTTGAAGTGGGACATATTAATGGTAACGTGCATATAGCTTAAATTATAATAAAAACCAAAATAAAATTGGCTTCTTGAAAAATTGAATTGAAACAGAGACACTTAAAATATTAAAAACCACTTGTGTTAAACATTAAGGTTTTGAATACCGGTTGAGAATTTGCTCAAAATTTGTACAGAGATACTTTCGCATATGCCGAAAACTGTTTTGGCAGAATTATAAGCCCGTTCCTAACAGAAATAAAAATTGGGGCTTTAGAGTGTAAGTTAGTTTTCTGGGTTTTCTTCAAACGCGAAACTCATTTTTCAATGATCTGATATTATTCTTCATCAACTTGGAAAAAACGACAACAGTTAAAGAAAAAAGACCGGGGGTCACTTACACTACAAAACGATTTTTCCAAAAAACCAGTTCGAAACATCCAGGCACGCCAAATTTTTAAAAGTGTGGTTATGGATAAGATGTTTACACATCCGAATTTTGTGAATATTGTTGAAAAATAACTGAACCTATAGAAATGGGTACAAATCTTGTATGTAAAGAATTTAATAGTACTCCACTTCAAAAATCTAAAATTGAGCAAGTTCCGAAGACGAAGATTCTTGTTTTTAATGATAGGATAATGTAAGAACTGTCATAAAAACTATTACTTAATTTTTCATCAAGTTCTCATAAAAATTTAAATTTCTTTGAAATCTTTTACTAAAGACTTCGTAAATTCATCACATCGGCAATAATAGAGTACCCATAGGGCCAAACTCGAAATCAAACATTTGTTTCGAACAAAAACCACAACACATATTCTCCACAGGTCCAGAAGGGGTGGAGAAAAGAGAT</canonical>
            <polymorphic>CATCACCGAAAATTTACCATGGTCACTACCATCGCAAACTAAATCTGGTGGTATTAGGGTAACTATCACTGCGATGAAAATATTCGAAAAATAATAAGTACAAGCAAAATAAGTCAAATTTTTATCTTAGTTATTGGAGATAATTGTTTTTGCAAAAAAAAAGTTGAAGTGGGACATATTAATGGTAACGTGCATATAGCTTAAATTATAATAAAAACCAAAATAAAATTGGCTTCTTGAAAAATTGAATTGAAACAGAGACACTTAAAATATTAAAAACCACTTGTGTTAAACATTAAGGTTTTGAATACCGGTTGAGAATTTGCTCAAAATTTGTACAGAGATACTTTCGCATATGCCGAAAACTGTTTTGGCAGAATTATAAGCCCGTTCCTAACAGAAATAAAAATTGGGGCTTTAGAGTGTAAGTTAGTTTTCTGGGTTTTCTTCAAACGCGAAACTCATTTTTCAATGATCTGATATTATTCTTCATCAACTTKGAAAAAACGACAACAGTTAAAGAAAAAAGACCGGGGGTCACTTACACTACAAAACGATTTTTCCAAAAAACCAGTTCGAAACATCCAGGCACGCCAAATTTTTAAAAGTGTGGTTATGGATAAGATGTTTACACATCCGAATTTTGTGAATATTGTTGAAAAATAACTGAACCTATAGAAATGGGTACAAATCTTGTATGTAAAGAATTTAATAGTACTCCACTTCAAAAATCTAAAATTGAGCAAGTTCCGAAGACGAAGATTCTTGTTTTTAATGATAGGATAATGTAAGAACTGTCATAAAAACTATTACTTAATTTTTCATCAAGTTCTCATAAAAATTTAAATTTCTTTGAAATCTTTTACTAAAGACTTCGTAAATTCATCACATCGGCAATAATAGAGTACCCATAGGGCCAAACTCGAAATCAAACATTTGTTTCGAACAAAAACCACAACACATATTCTCCACAGGTCCAGAAGGGGTGGAGAAAAGAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGTTCCTAACAGAAATAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGTGTAAACATCTTATCCATAACC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCGTTCCTAACAGAAATAAAAATTGGGGCTTTAGAGTGTAAGTTAGTTTTCTGGGTTTTCTTCAAACGCGAAACTCATTTTTCAATGATCTGATATTATTCTTCATCAACTTGGAAAAAACGACAACAGTTAAAGAAAAAAGACCGGGGGTCACTTACACTACAAAACGATTTTTCCAAAAAACCAGTTCGAAACATCCAGGCACGCCAAATTTTTAAAAGTGTGGTTATGGATAAGATGTTTACACA</canonical_amplicon>
		<polymorphic_amplicon>CCGTTCCTAACAGAAATAAAAATTGGGGCTTTAGAGTGTAAGTTAGTTTTCTGGGTTTTCTTCAAACGCGAAACTCATTTTTCAATGATCTGATATTATTCTTCATCAACTTKGAAAAAACGACAACAGTTAAAGAAAAAAGACCGGGGGTCACTTACACTACAAAACGATTTTTCCAAAAAACCAGTTCGAAACATCCAGGCACGCCAAATTTTTAAAAGTGTGGTTATGGATAAGATGTTTACACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5781</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>111106</contig_pos>
        <strand>+</strand>
        <context>AACGACAACA[G/T]TTAAAGAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTCAATGATCTGATATTATTCTTCATCAACTTGGAAAAAACGACAACA</left_flank>
        <right_flank>TTAAAGAAAAAAGACCGGGGGTCACTTACACTACAAAACGATTTTTCCAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCATGGTCACTACCATCGCAAACTAAATCTGGTGGTATTAGGGTAACTATCACTGCGATGAAAATATTCGAAAAATAATAAGTACAAGCAAAATAAGTCAAATTTTTATCTTAGTTATTGGAGATAATTGTTTTTGCAAAAAAAAAGTTGAAGTGGGACATATTAATGGTAACGTGCATATAGCTTAAATTATAATAAAAACCAAAATAAAATTGGCTTCTTGAAAAATTGAATTGAAACAGAGACACTTAAAATATTAAAAACCACTTGTGTTAAACATTAAGGTTTTGAATACCGGTTGAGAATTTGCTCAAAATTTGTACAGAGATACTTTCGCATATGCCGAAAACTGTTTTGGCAGAATTATAAGCCCGTTCCTAACAGAAATAAAAATTGGGGCTTTAGAGTGTAAGTTAGTTTTCTGGGTTTTCTTCAAACGCGAAACTCATTTTTCAATGATCTGATATTATTCTTCATCAACTTGGAAAAAACGACAACAGTTAAAGAAAAAAGACCGGGGGTCACTTACACTACAAAACGATTTTTCCAAAAAACCAGTTCGAAACATCCAGGCACGCCAAATTTTTAAAAGTGTGGTTATGGATAAGATGTTTACACATCCGAATTTTGTGAATATTGTTGAAAAATAACTGAACCTATAGAAATGGGTACAAATCTTGTATGTAAAGAATTTAATAGTACTCCACTTCAAAAATCTAAAATTGAGCAAGTTCCGAAGACGAAGATTCTTGTTTTTAATGATAGGATAATGTAAGAACTGTCATAAAAACTATTACTTAATTTTTCATCAAGTTCTCATAAAAATTTAAATTTCTTTGAAATCTTTTACTAAAGACTTCGTAAATTCATCACATCGGCAATAATAGAGTACCCATAGGGCCAAACTCGAAATCAAACATTTGTTTCGAACAAAAACCACAACACATATTCTCCACAGGTCCAGAAGGGGTGGAGAAAAGAGATGAAAAGTGCTTGCCGT</canonical>
            <polymorphic>CCATGGTCACTACCATCGCAAACTAAATCTGGTGGTATTAGGGTAACTATCACTGCGATGAAAATATTCGAAAAATAATAAGTACAAGCAAAATAAGTCAAATTTTTATCTTAGTTATTGGAGATAATTGTTTTTGCAAAAAAAAAGTTGAAGTGGGACATATTAATGGTAACGTGCATATAGCTTAAATTATAATAAAAACCAAAATAAAATTGGCTTCTTGAAAAATTGAATTGAAACAGAGACACTTAAAATATTAAAAACCACTTGTGTTAAACATTAAGGTTTTGAATACCGGTTGAGAATTTGCTCAAAATTTGTACAGAGATACTTTCGCATATGCCGAAAACTGTTTTGGCAGAATTATAAGCCCGTTCCTAACAGAAATAAAAATTGGGGCTTTAGAGTGTAAGTTAGTTTTCTGGGTTTTCTTCAAACGCGAAACTCATTTTTCAATGATCTGATATTATTCTTCATCAACTTGGAAAAAACGACAACAKTTAAAGAAAAAAGACCGGGGGTCACTTACACTACAAAACGATTTTTCCAAAAAACCAGTTCGAAACATCCAGGCACGCCAAATTTTTAAAAGTGTGGTTATGGATAAGATGTTTACACATCCGAATTTTGTGAATATTGTTGAAAAATAACTGAACCTATAGAAATGGGTACAAATCTTGTATGTAAAGAATTTAATAGTACTCCACTTCAAAAATCTAAAATTGAGCAAGTTCCGAAGACGAAGATTCTTGTTTTTAATGATAGGATAATGTAAGAACTGTCATAAAAACTATTACTTAATTTTTCATCAAGTTCTCATAAAAATTTAAATTTCTTTGAAATCTTTTACTAAAGACTTCGTAAATTCATCACATCGGCAATAATAGAGTACCCATAGGGCCAAACTCGAAATCAAACATTTGTTTCGAACAAAAACCACAACACATATTCTCCACAGGTCCAGAAGGGGTGGAGAAAAGAGATGAAAAGTGCTTGCCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>351 281 220 148</canonical_bands>
                <polymorphic_bands>429 351 220</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGTTCCTAACAGAAATAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGTGTAAACATCTTATCCATAACC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCGTTCCTAACAGAAATAAAAATTGGGGCTTTAGAGTGTAAGTTAGTTTTCTGGGTTTTCTTCAAACGCGAAACTCATTTTTCAATGATCTGATATTATTCTTCATCAACTTGGAAAAAACGACAACAGTTAAAGAAAAAAGACCGGGGGTCACTTACACTACAAAACGATTTTTCCAAAAAACCAGTTCGAAACATCCAGGCACGCCAAATTTTTAAAAGTGTGGTTATGGATAAGATGTTTACACA</canonical_amplicon>
		<polymorphic_amplicon>CCGTTCCTAACAGAAATAAAAATTGGGGCTTTAGAGTGTAAGTTAGTTTTCTGGGTTTTCTTCAAACGCGAAACTCATTTTTCAATGATCTGATATTATTCTTCATCAACTTGGAAAAAACGACAACAKTTAAAGAAAAAAGACCGGGGGTCACTTACACTACAAAACGATTTTTCCAAAAAACCAGTTCGAAACATCCAGGCACGCCAAATTTTTAAAAGTGTGGTTATGGATAAGATGTTTACACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5782</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>111145</contig_pos>
        <strand>+</strand>
        <context>CACTACAAAA[C/T]GATTTTTCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACGACAACAGTTAAAGAAAAAAGACCGGGGGTCACTTACACTACAAAA</left_flank>
        <right_flank>GATTTTTCCAAAAAACCAGTTCGAAACATCCAGGCACGCCAAATTTTTAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGGTAACTATCACTGCGATGAAAATATTCGAAAAATAATAAGTACAAGCAAAATAAGTCAAATTTTTATCTTAGTTATTGGAGATAATTGTTTTTGCAAAAAAAAAGTTGAAGTGGGACATATTAATGGTAACGTGCATATAGCTTAAATTATAATAAAAACCAAAATAAAATTGGCTTCTTGAAAAATTGAATTGAAACAGAGACACTTAAAATATTAAAAACCACTTGTGTTAAACATTAAGGTTTTGAATACCGGTTGAGAATTTGCTCAAAATTTGTACAGAGATACTTTCGCATATGCCGAAAACTGTTTTGGCAGAATTATAAGCCCGTTCCTAACAGAAATAAAAATTGGGGCTTTAGAGTGTAAGTTAGTTTTCTGGGTTTTCTTCAAACGCGAAACTCATTTTTCAATGATCTGATATTATTCTTCATCAACTTGGAAAAAACGACAACAGTTAAAGAAAAAAGACCGGGGGTCACTTACACTACAAAACGATTTTTCCAAAAAACCAGTTCGAAACATCCAGGCACGCCAAATTTTTAAAAGTGTGGTTATGGATAAGATGTTTACACATCCGAATTTTGTGAATATTGTTGAAAAATAACTGAACCTATAGAAATGGGTACAAATCTTGTATGTAAAGAATTTAATAGTACTCCACTTCAAAAATCTAAAATTGAGCAAGTTCCGAAGACGAAGATTCTTGTTTTTAATGATAGGATAATGTAAGAACTGTCATAAAAACTATTACTTAATTTTTCATCAAGTTCTCATAAAAATTTAAATTTCTTTGAAATCTTTTACTAAAGACTTCGTAAATTCATCACATCGGCAATAATAGAGTACCCATAGGGCCAAACTCGAAATCAAACATTTGTTTCGAACAAAAACCACAACACATATTCTCCACAGGTCCAGAAGGGGTGGAGAAAAGAGATGAAAAGTGCTTGCCGTAGCCGGCTAAATTTTTTTCAGAATGTGTTACAACCTTCT</canonical>
            <polymorphic>AGGGTAACTATCACTGCGATGAAAATATTCGAAAAATAATAAGTACAAGCAAAATAAGTCAAATTTTTATCTTAGTTATTGGAGATAATTGTTTTTGCAAAAAAAAAGTTGAAGTGGGACATATTAATGGTAACGTGCATATAGCTTAAATTATAATAAAAACCAAAATAAAATTGGCTTCTTGAAAAATTGAATTGAAACAGAGACACTTAAAATATTAAAAACCACTTGTGTTAAACATTAAGGTTTTGAATACCGGTTGAGAATTTGCTCAAAATTTGTACAGAGATACTTTCGCATATGCCGAAAACTGTTTTGGCAGAATTATAAGCCCGTTCCTAACAGAAATAAAAATTGGGGCTTTAGAGTGTAAGTTAGTTTTCTGGGTTTTCTTCAAACGCGAAACTCATTTTTCAATGATCTGATATTATTCTTCATCAACTTGGAAAAAACGACAACAGTTAAAGAAAAAAGACCGGGGGTCACTTACACTACAAAAYGATTTTTCCAAAAAACCAGTTCGAAACATCCAGGCACGCCAAATTTTTAAAAGTGTGGTTATGGATAAGATGTTTACACATCCGAATTTTGTGAATATTGTTGAAAAATAACTGAACCTATAGAAATGGGTACAAATCTTGTATGTAAAGAATTTAATAGTACTCCACTTCAAAAATCTAAAATTGAGCAAGTTCCGAAGACGAAGATTCTTGTTTTTAATGATAGGATAATGTAAGAACTGTCATAAAAACTATTACTTAATTTTTCATCAAGTTCTCATAAAAATTTAAATTTCTTTGAAATCTTTTACTAAAGACTTCGTAAATTCATCACATCGGCAATAATAGAGTACCCATAGGGCCAAACTCGAAATCAAACATTTGTTTCGAACAAAAACCACAACACATATTCTCCACAGGTCCAGAAGGGGTGGAGAAAAGAGATGAAAAGTGCTTGCCGTAGCCGGCTAAATTTTTTTCAGAATGTGTTACAACCTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGTTCCTAACAGAAATAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGTGTAAACATCTTATCCATAACC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCGTTCCTAACAGAAATAAAAATTGGGGCTTTAGAGTGTAAGTTAGTTTTCTGGGTTTTCTTCAAACGCGAAACTCATTTTTCAATGATCTGATATTATTCTTCATCAACTTGGAAAAAACGACAACAGTTAAAGAAAAAAGACCGGGGGTCACTTACACTACAAAACGATTTTTCCAAAAAACCAGTTCGAAACATCCAGGCACGCCAAATTTTTAAAAGTGTGGTTATGGATAAGATGTTTACACA</canonical_amplicon>
		<polymorphic_amplicon>CCGTTCCTAACAGAAATAAAAATTGGGGCTTTAGAGTGTAAGTTAGTTTTCTGGGTTTTCTTCAAACGCGAAACTCATTTTTCAATGATCTGATATTATTCTTCATCAACTTGGAAAAAACGACAACAGTTAAAGAAAAAAGACCGGGGGTCACTTACACTACAAAAYGATTTTTCCAAAAAACCAGTTCGAAACATCCAGGCACGCCAAATTTTTAAAAGTGTGGTTATGGATAAGATGTTTACACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5783</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>111586</contig_pos>
        <strand></strand>
        <context>GTGGAGAAAA[G/A]RGATGAAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACAAAAACCACAACACATATTCTCCACAGGTCCAGAAGGGGTGGAGAAAA</left_flank>
        <right_flank>AGATGAAAAGTGCTTGCCGTAGCCGGCTAAATTTTTTTCAGAATGTGTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGGAAAAAACGACAACAGTTAAAGAAAAAAGACCGGGGGTCACTTACACTACAAAACGATTTTTCCAAAAAACCAGTTCGAAACATCCAGGCACGCCAAATTTTTAAAAGTGTGGTTATGGATAAGATGTTTACACATCCGAATTTTGTGAATATTGTTGAAAAATAACTGAACCTATAGAAATGGGTACAAATCTTGTATGTAAAGAATTTAATAGTACTCCACTTCAAAAATCTAAAATTGAGCAAGTTCCGAAGACGAAGATTCTTGTTTTTAATGATAGGATAATGTAAGAACTGTCATAAAAACTATTACTTAATTTTTCATCAAGTTCTCATAAAAATTTAAATTTCTTTGAAATCTTTTACTAAAGACTTCGTAAATTCATCACATCGGCAATAATAGAGTACCCATAGGGCCAAACTCGAAATCAAACATTTGTTTCGAACAAAAACCACAACACATATTCTCCACAGGTCCAGAAGGGGTGGAGAAAAGAGATGAAAAGTGCTTGCCGTAGCCGGCTAAATTTTTTTCAGAATGTGTTACAACCTTCTGGTGAGAACCGGTTACATTTTTTCTCTCATCTCGAAGAGAATTCTCAATGTATAAGTACCCCAATTTTTAGCAAACTCTCGACCAGTATCCTAAAAATGTTCGGAAGATAAAAACGTTTTAAAAAACGAATGTAATGTTAACGTTGGGGATAAAGTAGAATAAAATCAAAGAAGAGGTGTCTCACTATCAACTATCAAAAGCCGAAAAATGATGAAAACAAGTTCAAGTCTGGCGGATGAGAGGAAGTAGCTTTAGATAGTCACAAAATTGTTATAATGAACAAACTTAATGCAAAAAAAAGGGCACACCTTAAAGAATTGAAATACTTTCCACTTAAAAATACAATAATAGTATTCTCAAAATAACCATTCTATTTTTTAGCCGCGGCACCAAAGTCACCAAAAGCAGCACGACTGGTACATGCAATACCTCACAAATGG</canonical>
            <polymorphic>CTTGGAAAAAACGACAACAGTTAAAGAAAAAAGACCGGGGGTCACTTACACTACAAAACGATTTTTCCAAAAAACCAGTTCGAAACATCCAGGCACGCCAAATTTTTAAAAGTGTGGTTATGGATAAGATGTTTACACATCCGAATTTTGTGAATATTGTTGAAAAATAACTGAACCTATAGAAATGGGTACAAATCTTGTATGTAAAGAATTTAATAGTACTCCACTTCAAAAATCTAAAATTGAGCAAGTTCCGAAGACGAAGATTCTTGTTTTTAATGATAGGATAATGTAAGAACTGTCATAAAAACTATTACTTAATTTTTCATCAAGTTCTCATAAAAATTTAAATTTCTTTGAAATCTTTTACTAAAGACTTCGTAAATTCATCACATCGGCAATAATAGAGTACCCATAGGGCCAAACTCGAAATCAAACATTTGTTTCGAACAAAAACCACAACACATATTCTCCACAGGTCCAGAAGGGGTGGAGAAAARAGATGAAAAGTGCTTGCCGTAGCCGGCTAAATTTTTTTCAGAATGTGTTACAACCTTCTGGTGAGAACCGGTTACATTTTTTCTCTCATCTCGAAGAGAATTCTCAATGTATAAGTACCCCAATTTTTAGCAAACTCTCGACCAGTATCCTAAAAATGTTCGGAAGATAAAAACGTTTTAAAAAACGAATGTAATGTTAACGTTGGGGATAAAGTAGAATAAAATCAAAGAAGAGGTGTCTCACTATCAACTATCAAAAGCCGAAAAATGATGAAAACAAGTTCAAGTCTGGCGGATGAGAGGAAGTAGCTTTAGATAGTCACAAAATTGTTATAATGAACAAACTTAATGCAAAAAAAAGGGCACACCTTAAAGAATTGAAATACTTTCCACTTAAAAATACAATAATAGTATTCTCAAAATAACCATTCTATTTTTTAGCCGCGGCACCAAAGTCACCAAAAGCAGCACGACTGGTACATGCAATACCTCACAAATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCGAATTTTGTGAATATTGT</pcr_primer_p1>
		<pcr_primer_p2>TCCGAACATTTTTAGGATACTG</pcr_primer_p2>
		<pcr_amplicon_size>526</pcr_amplicon_size>
		<canonical_amplicon>ATCCGAATTTTGTGAATATTGTTGAAAAATAACTGAACCTATAGAAATGGGTACAAATCTTGTATGTAAAGAATTTAATAGTACTCCACTTCAAAAATCTAAAATTGAGCAAGTTCCGAAGACGAAGATTCTTGTTTTTAATGATAGGATAATGTAAGAACTGTCATAAAAACTATTACTTAATTTTTCATCAAGTTCTCATAAAAATTTAAATTTCTTTGAAATCTTTTACTAAAGACTTCGTAAATTCATCACATCGGCAATAATAGAGTACCCATAGGGCCAAACTCGAAATCAAACATTTGTTTCGAACAAAAACCACAACACATATTCTCCACAGGTCCAGAAGGGGTGGAGAAAAGAGATGAAAAGTGCTTGCCGTAGCCGGCTAAATTTTTTTCAGAATGTGTTACAACCTTCTGGTGAGAACCGGTTACATTTTTTCTCTCATCTCGAAGAGAATTCTCAATGTATAAGTACCCCAATTTTTAGCAAACTCTCGACCAGTATCCTAAAAATGTTCGGA</canonical_amplicon>
		<polymorphic_amplicon>ATCCGAATTTTGTGAATATTGTTGAAAAATAACTGAACCTATAGAAATGGGTACAAATCTTGTATGTAAAGAATTTAATAGTACTCCACTTCAAAAATCTAAAATTGAGCAAGTTCCGAAGACGAAGATTCTTGTTTTTAATGATAGGATAATGTAAGAACTGTCATAAAAACTATTACTTAATTTTTCATCAAGTTCTCATAAAAATTTAAATTTCTTTGAAATCTTTTACTAAAGACTTCGTAAATTCATCACATCGGCAATAATAGAGTACCCATAGGGCCAAACTCGAAATCAAACATTTGTTTCGAACAAAAACCACAACACATATTCTCCACAGGTCCAGAAGGGGTGGAGAAAARAGATGAAAAGTGCTTGCCGTAGCCGGCTAAATTTTTTTCAGAATGTGTTACAACCTTCTGGTGAGAACCGGTTACATTTTTTCTCTCATCTCGAAGAGAATTCTCAATGTATAAGTACCCCAATTTTTAGCAAACTCTCGACCAGTATCCTAAAAATGTTCGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5784</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>115182</contig_pos>
        <strand>+</strand>
        <context>AAATTTGTCA[A/G]GCTGTGTCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAACCATTAGACTTGCCGACCACACGGATGATTGCAAGACAAATTTGTCA</left_flank>
        <right_flank>GCTGTGTCCTACCTTCACACAAAGAAAATTCTTCACAAGGATCTGAGAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCTGGATTTTAAAGAAACTCTAGTGAAAAAACCTCAAAAACAGGTTTTTTGGTCTAAGACATCCACCGTATCAAAGAATATGTATTGTCCTCGGTGTTGTGTAGCTACAATTAGTTAATCCCATTCGAAGATCGTCTAGGAGAGATCACGAAGAAAAATTCTGCTTTTCGTTCTGTTTTTCCTCGGGGTGTACAACGCCCTCTTCTCAATACAAGTGTGCCTCTCGTTGATACAAGTGTGATCAGGCAGACTAAATCTAAGAGTCTAGCGATTTGTCAATTGGAGCTTGTCACGTTGGGCCGTCTTGGATGTCTAGTTTTTCAGAACACTCGTCACGACAACATTGCGTTATTCCTTGGATACTTCATGACGGACGGGAAGTACGGGATGGTTATGTCGTTGTCGCGCGGCAGTCAATCCTTATACACACTCATACATGTCATCCGAGAACCATTAGACTTGCCGACCACACGGATGATTGCAAGACAAATTTGTCAGGCTGTGTCCTACCTTCACACAAAGAAAATTCTTCACAAGGATCTGAGAAGCAAGAATATTCTTCTGGAGAGCAAGAATAAAGTGGTGATCACCGATTTCGGCATTCTTTCCATGAAGAGACTTGCCTATCCTAAAGGGTATTTTTTGAAATTGAACGAGAGCTCAGATAATGTATTTTTTTAATTTCAGAAAACTCGGATGGCACACCTCCAGATTCTGGGCCAACTACCTCGCTCCAGAATTGGCGATGGCTTTGAGGACAGAGTTTGATGAGCATGAGAGTGAAGATTTCCCATTCACAGAGGCTTCCGATGTCTATGCATTTGGGTTAGTAGAGAACTACAGTAATAGGAAAAACAAACAATTCAATATATTTTGACCATTTTCAGGAGTCTGGAGCTTGGCTGTCAAGTTTCCGATCGTTTTGAAAGTTTTGGAAGGTGTAAAATAGACCTCGATTAAAAGTTTTGCTGTCCCCAAATTTTTTGGAAAATTCTAGT</canonical>
            <polymorphic>AAGCTGGATTTTAAAGAAACTCTAGTGAAAAAACCTCAAAAACAGGTTTTTTGGTCTAAGACATCCACCGTATCAAAGAATATGTATTGTCCTCGGTGTTGTGTAGCTACAATTAGTTAATCCCATTCGAAGATCGTCTAGGAGAGATCACGAAGAAAAATTCTGCTTTTCGTTCTGTTTTTCCTCGGGGTGTACAACGCCCTCTTCTCAATACAAGTGTGCCTCTCGTTGATACAAGTGTGATCAGGCAGACTAAATCTAAGAGTCTAGCGATTTGTCAATTGGAGCTTGTCACGTTGGGCCGTCTTGGATGTCTAGTTTTTCAGAACACTCGTCACGACAACATTGCGTTATTCCTTGGATACTTCATGACGGACGGGAAGTACGGGATGGTTATGTCGTTGTCGCGCGGCAGTCAATCCTTATACACACTCATACATGTCATCCGAGAACCATTAGACTTGCCGACCACACGGATGATTGCAAGACAAATTTGTCARGCTGTGTCCTACCTTCACACAAAGAAAATTCTTCACAAGGATCTGAGAAGCAAGAATATTCTTCTGGAGAGCAAGAATAAAGTGGTGATCACCGATTTCGGCATTCTTTCCATGAAGAGACTTGCCTATCCTAAAGGGTATTTTTTGAAATTGAACGAGAGCTCAGATAATGTATTTTTTTAATTTCAGAAAACTCGGATGGCACACCTCCAGATTCTGGGCCAACTACCTCGCTCCAGAATTGGCGATGGCTTTGAGGACAGAGTTTGATGAGCATGAGAGTGAAGATTTCCCATTCACAGAGGCTTCCGATGTCTATGCATTTGGGTTAGTAGAGAACTACAGTAATAGGAAAAACAAACAATTCAATATATTTTGACCATTTTCAGGAGTCTGGAGCTTGGCTGTCAAGTTTCCGATCGTTTTGAAAGTTTTGGAAGGTGTAAAATAGACCTCGATTAAAAGTTTTGCTGTCCCCAAATTTTTTGGAAAATTCTAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>200 181 160 103 96 94 60 54 30 14 5 3</canonical_bands>
                <polymorphic_bands>360 181 103 96 94 60 54 30 14 5 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGTTTTTCAGAACACTCGTCAC</pcr_primer_p1>
		<pcr_primer_p2>AATATTCTTGCTTCTCAGATCCT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TAGTTTTTCAGAACACTCGTCACGACAACATTGCGTTATTCCTTGGATACTTCATGACGGACGGGAAGTACGGGATGGTTATGTCGTTGTCGCGCGGCAGTCAATCCTTATACACACTCATACATGTCATCCGAGAACCATTAGACTTGCCGACCACACGGATGATTGCAAGACAAATTTGTCAGGCTGTGTCCTACCTTCACACAAAGAAAATTCTTCACAAGGATCTGAGAAGCAAGAATATT</canonical_amplicon>
		<polymorphic_amplicon>TAGTTTTTCAGAACACTCGTCACGACAACATTGCGTTATTCCTTGGATACTTCATGACGGACGGGAAGTACGGGATGGTTATGTCGTTGTCGCGCGGCAGTCAATCCTTATACACACTCATACATGTCATCCGAGAACCATTAGACTTGCCGACCACACGGATGATTGCAAGACAAATTTGTCARGCTGTGTCCTACCTTCACACAAAGAAAATTCTTCACAAGGATCTGAGAAGCAAGAATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5785</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>115170</contig_pos>
        <strand>+</strand>
        <context>TGATTGCAAG[A/G]CAAATTTGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATGTCATCCGAGAACCATTAGACTTGCCGACCACACGGATGATTGCAAG</left_flank>
        <right_flank>CAAATTTGTCAGGCTGTGTCCTACCTTCACACAAAGAAAATTCTTCACAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCGTACAAGGTAAGCTGGATTTTAAAGAAACTCTAGTGAAAAAACCTCAAAAACAGGTTTTTTGGTCTAAGACATCCACCGTATCAAAGAATATGTATTGTCCTCGGTGTTGTGTAGCTACAATTAGTTAATCCCATTCGAAGATCGTCTAGGAGAGATCACGAAGAAAAATTCTGCTTTTCGTTCTGTTTTTCCTCGGGGTGTACAACGCCCTCTTCTCAATACAAGTGTGCCTCTCGTTGATACAAGTGTGATCAGGCAGACTAAATCTAAGAGTCTAGCGATTTGTCAATTGGAGCTTGTCACGTTGGGCCGTCTTGGATGTCTAGTTTTTCAGAACACTCGTCACGACAACATTGCGTTATTCCTTGGATACTTCATGACGGACGGGAAGTACGGGATGGTTATGTCGTTGTCGCGCGGCAGTCAATCCTTATACACACTCATACATGTCATCCGAGAACCATTAGACTTGCCGACCACACGGATGATTGCAAGACAAATTTGTCAGGCTGTGTCCTACCTTCACACAAAGAAAATTCTTCACAAGGATCTGAGAAGCAAGAATATTCTTCTGGAGAGCAAGAATAAAGTGGTGATCACCGATTTCGGCATTCTTTCCATGAAGAGACTTGCCTATCCTAAAGGGTATTTTTTGAAATTGAACGAGAGCTCAGATAATGTATTTTTTTAATTTCAGAAAACTCGGATGGCACACCTCCAGATTCTGGGCCAACTACCTCGCTCCAGAATTGGCGATGGCTTTGAGGACAGAGTTTGATGAGCATGAGAGTGAAGATTTCCCATTCACAGAGGCTTCCGATGTCTATGCATTTGGGTTAGTAGAGAACTACAGTAATAGGAAAAACAAACAATTCAATATATTTTGACCATTTTCAGGAGTCTGGAGCTTGGCTGTCAAGTTTCCGATCGTTTTGAAAGTTTTGGAAGGTGTAAAATAGACCTCGATTAAAAGTTTTGCTGTCCCCAAATTTTTTG</canonical>
            <polymorphic>TGCGTACAAGGTAAGCTGGATTTTAAAGAAACTCTAGTGAAAAAACCTCAAAAACAGGTTTTTTGGTCTAAGACATCCACCGTATCAAAGAATATGTATTGTCCTCGGTGTTGTGTAGCTACAATTAGTTAATCCCATTCGAAGATCGTCTAGGAGAGATCACGAAGAAAAATTCTGCTTTTCGTTCTGTTTTTCCTCGGGGTGTACAACGCCCTCTTCTCAATACAAGTGTGCCTCTCGTTGATACAAGTGTGATCAGGCAGACTAAATCTAAGAGTCTAGCGATTTGTCAATTGGAGCTTGTCACGTTGGGCCGTCTTGGATGTCTAGTTTTTCAGAACACTCGTCACGACAACATTGCGTTATTCCTTGGATACTTCATGACGGACGGGAAGTACGGGATGGTTATGTCGTTGTCGCGCGGCAGTCAATCCTTATACACACTCATACATGTCATCCGAGAACCATTAGACTTGCCGACCACACGGATGATTGCAAGRCAAATTTGTCAGGCTGTGTCCTACCTTCACACAAAGAAAATTCTTCACAAGGATCTGAGAAGCAAGAATATTCTTCTGGAGAGCAAGAATAAAGTGGTGATCACCGATTTCGGCATTCTTTCCATGAAGAGACTTGCCTATCCTAAAGGGTATTTTTTGAAATTGAACGAGAGCTCAGATAATGTATTTTTTTAATTTCAGAAAACTCGGATGGCACACCTCCAGATTCTGGGCCAACTACCTCGCTCCAGAATTGGCGATGGCTTTGAGGACAGAGTTTGATGAGCATGAGAGTGAAGATTTCCCATTCACAGAGGCTTCCGATGTCTATGCATTTGGGTTAGTAGAGAACTACAGTAATAGGAAAAACAAACAATTCAATATATTTTGACCATTTTCAGGAGTCTGGAGCTTGGCTGTCAAGTTTCCGATCGTTTTGAAAGTTTTGGAAGGTGTAAAATAGACCTCGATTAAAAGTTTTGCTGTCCCCAAATTTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNNNNGTC</site>
                <isoschizomers>
                    <enzyme>AasI</enzyme>
                    <enzyme>DrdI</enzyme>
                    <enzyme>DseDI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGTTTTTCAGAACACTCGTCAC</pcr_primer_p1>
		<pcr_primer_p2>AATATTCTTGCTTCTCAGATCCT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TAGTTTTTCAGAACACTCGTCACGACAACATTGCGTTATTCCTTGGATACTTCATGACGGACGGGAAGTACGGGATGGTTATGTCGTTGTCGCGCGGCAGTCAATCCTTATACACACTCATACATGTCATCCGAGAACCATTAGACTTGCCGACCACACGGATGATTGCAAGACAAATTTGTCAGGCTGTGTCCTACCTTCACACAAAGAAAATTCTTCACAAGGATCTGAGAAGCAAGAATATT</canonical_amplicon>
		<polymorphic_amplicon>TAGTTTTTCAGAACACTCGTCACGACAACATTGCGTTATTCCTTGGATACTTCATGACGGACGGGAAGTACGGGATGGTTATGTCGTTGTCGCGCGGCAGTCAATCCTTATACACACTCATACATGTCATCCGAGAACCATTAGACTTGCCGACCACACGGATGATTGCAAGRCAAATTTGTCAGGCTGTGTCCTACCTTCACACAAAGAAAATTCTTCACAAGGATCTGAGAAGCAAGAATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5786</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>114994</contig_pos>
        <strand>+</strand>
        <context>CCGTCTTGGA[C/T]GTCTAGTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAGTCTAGCGATTTGTCAATTGGAGCTTGTCACGTTGGGCCGTCTTGGA</left_flank>
        <right_flank>GTCTAGTTTTTCAGAACACTCGTCACGACAACATTGCGTTATTCCTTGGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTCTATTGCCTTCGACACAATCGAGTTTGACAAACAAAATCCGATAATTGGTCGCGGGCGGTTCGGAGAAGTTCAACGTGGATTTCATTATGGCGACGTGGCCGTCAAAATCTACAATATGGAACACATCTCGGACCACTCAAAGAGAGCGGAGGAGTTCAAATTGGAAGTTTCTGCGTACAAGGTAAGCTGGATTTTAAAGAAACTCTAGTGAAAAAACCTCAAAAACAGGTTTTTTGGTCTAAGACATCCACCGTATCAAAGAATATGTATTGTCCTCGGTGTTGTGTAGCTACAATTAGTTAATCCCATTCGAAGATCGTCTAGGAGAGATCACGAAGAAAAATTCTGCTTTTCGTTCTGTTTTTCCTCGGGGTGTACAACGCCCTCTTCTCAATACAAGTGTGCCTCTCGTTGATACAAGTGTGATCAGGCAGACTAAATCTAAGAGTCTAGCGATTTGTCAATTGGAGCTTGTCACGTTGGGCCGTCTTGGATGTCTAGTTTTTCAGAACACTCGTCACGACAACATTGCGTTATTCCTTGGATACTTCATGACGGACGGGAAGTACGGGATGGTTATGTCGTTGTCGCGCGGCAGTCAATCCTTATACACACTCATACATGTCATCCGAGAACCATTAGACTTGCCGACCACACGGATGATTGCAAGACAAATTTGTCAGGCTGTGTCCTACCTTCACACAAAGAAAATTCTTCACAAGGATCTGAGAAGCAAGAATATTCTTCTGGAGAGCAAGAATAAAGTGGTGATCACCGATTTCGGCATTCTTTCCATGAAGAGACTTGCCTATCCTAAAGGGTATTTTTTGAAATTGAACGAGAGCTCAGATAATGTATTTTTTTAATTTCAGAAAACTCGGATGGCACACCTCCAGATTCTGGGCCAACTACCTCGCTCCAGAATTGGCGATGGCTTTGAGGACAGAGTTTGATGAGCATGAGAGTGAAGATTTCCCATTCACAGAGGCTTCCGA</canonical>
            <polymorphic>GTTTCTATTGCCTTCGACACAATCGAGTTTGACAAACAAAATCCGATAATTGGTCGCGGGCGGTTCGGAGAAGTTCAACGTGGATTTCATTATGGCGACGTGGCCGTCAAAATCTACAATATGGAACACATCTCGGACCACTCAAAGAGAGCGGAGGAGTTCAAATTGGAAGTTTCTGCGTACAAGGTAAGCTGGATTTTAAAGAAACTCTAGTGAAAAAACCTCAAAAACAGGTTTTTTGGTCTAAGACATCCACCGTATCAAAGAATATGTATTGTCCTCGGTGTTGTGTAGCTACAATTAGTTAATCCCATTCGAAGATCGTCTAGGAGAGATCACGAAGAAAAATTCTGCTTTTCGTTCTGTTTTTCCTCGGGGTGTACAACGCCCTCTTCTCAATACAAGTGTGCCTCTCGTTGATACAAGTGTGATCAGGCAGACTAAATCTAAGAGTCTAGCGATTTGTCAATTGGAGCTTGTCACGTTGGGCCGTCTTGGAYGTCTAGTTTTTCAGAACACTCGTCACGACAACATTGCGTTATTCCTTGGATACTTCATGACGGACGGGAAGTACGGGATGGTTATGTCGTTGTCGCGCGGCAGTCAATCCTTATACACACTCATACATGTCATCCGAGAACCATTAGACTTGCCGACCACACGGATGATTGCAAGACAAATTTGTCAGGCTGTGTCCTACCTTCACACAAAGAAAATTCTTCACAAGGATCTGAGAAGCAAGAATATTCTTCTGGAGAGCAAGAATAAAGTGGTGATCACCGATTTCGGCATTCTTTCCATGAAGAGACTTGCCTATCCTAAAGGGTATTTTTTGAAATTGAACGAGAGCTCAGATAATGTATTTTTTTAATTTCAGAAAACTCGGATGGCACACCTCCAGATTCTGGGCCAACTACCTCGCTCCAGAATTGGCGATGGCTTTGAGGACAGAGTTTGATGAGCATGAGAGTGAAGATTTCCCATTCACAGAGGCTTCCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTAGGAGAGATCACGAAGAA</pcr_primer_p1>
		<pcr_primer_p2>GTCATGAAGTATCCAAGGAATAA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>GTCTAGGAGAGATCACGAAGAAAAATTCTGCTTTTCGTTCTGTTTTTCCTCGGGGTGTACAACGCCCTCTTCTCAATACAAGTGTGCCTCTCGTTGATACAAGTGTGATCAGGCAGACTAAATCTAAGAGTCTAGCGATTTGTCAATTGGAGCTTGTCACGTTGGGCCGTCTTGGATGTCTAGTTTTTCAGAACACTCGTCACGACAACATTGCGTTATTCCTTGGATACTTCATGAC</canonical_amplicon>
		<polymorphic_amplicon>GTCTAGGAGAGATCACGAAGAAAAATTCTGCTTTTCGTTCTGTTTTTCCTCGGGGTGTACAACGCCCTCTTCTCAATACAAGTGTGCCTCTCGTTGATACAAGTGTGATCAGGCAGACTAAATCTAAGAGTCTAGCGATTTGTCAATTGGAGCTTGTCACGTTGGGCCGTCTTGGAYGTCTAGTTTTTCAGAACACTCGTCACGACAACATTGCGTTATTCCTTGGATACTTCATGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5787</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>121324</contig_pos>
        <strand>+</strand>
        <context>AAGTTGACCT[A/G]CAGATGAGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTATCCCCGTCGCGTCGCGCTTTTGTTTCGCGTCACTAATAAGTTGACCT</left_flank>
        <right_flank>CAGATGAGATAAGGCCCATTTTGTCTCATTCGCGCCATAGATTGCTATGT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAGCTCCGGACTCTTGAAAATGATCAACTGGCACTGTAAGCTTTATCTGCCTTGAATGGATATATCCACTTTGATTTTCGATCACTTCCTGATTTTTTGTTAGCCTTCTAATCTATCACAGCTTTTTCTATTCCCTATCCTTACCGCCAAGACTGCTGGACTTGTCCGTTCCTCGAGGATACTTCCGTAATCCATTCTTTTGTGTTGTTCCTACAAAAATACGCATATCAAGTGCCTGTGTTATTATGTAAATGGAGAGAAAGCAAATGAAGAAGAAAAAAGAAAAAAAAAGAGAGGAACAGATTAGATTCCAATCGCGGGGGAAATAGCCATAAGGAAAACAATCGGATAAGTGTTTAGAGAAGAAGGAATAAGATGAAAAGAAGGGGATAAAGTTACAACTTTGTCTCTCGGGAGGAGAAAGCCATAATCGAATCATCAAGTATATGTATCCCCGTCGCGTCGCGCTTTTGTTTCGCGTCACTAATAAGTTGACCTGCAGATGAGATAAGGCCCATTTTGTCTCATTCGCGCCATAGATTGCTATGTCGGATATATCCTTAAGACTATCTGTTCGCATCTCTCCCATTACTTTTGTGTCTCGGCGCATCGTTCCCTTCTTTTTTCTTCCTCCTATCTTTGCTTTTGATTTCACTCATTTCCTTTTCAAAGACATTTCGCTTTTCATCCTCAAAAAATCCGATTGCTAATATTTTTACTCAGTTTGCAAACAAGAAAAATTGCACAACTCAAAAAACTGCTATTATCAGTATGGAGATATGACTTCAAGAATATCGCAAGCGACGGTTTTCTCATTCCTTATATACTCCCAATTTTCACAGGTGAGCTATCTTACAAGGATGTTTGAAGCGGAATTTGGAATCCTGAAAATTCCGATCGGAATATTTCCAAAAAAAAAAAATTTTCCTCGGAATTAGGGATTTTTGAACTACCGTAAGTCAAAGGCGCACGCGAAAATTTTGCTCGCGGCTCACGAGC</canonical>
            <polymorphic>CGAGCTCCGGACTCTTGAAAATGATCAACTGGCACTGTAAGCTTTATCTGCCTTGAATGGATATATCCACTTTGATTTTCGATCACTTCCTGATTTTTTGTTAGCCTTCTAATCTATCACAGCTTTTTCTATTCCCTATCCTTACCGCCAAGACTGCTGGACTTGTCCGTTCCTCGAGGATACTTCCGTAATCCATTCTTTTGTGTTGTTCCTACAAAAATACGCATATCAAGTGCCTGTGTTATTATGTAAATGGAGAGAAAGCAAATGAAGAAGAAAAAAGAAAAAAAAAGAGAGGAACAGATTAGATTCCAATCGCGGGGGAAATAGCCATAAGGAAAACAATCGGATAAGTGTTTAGAGAAGAAGGAATAAGATGAAAAGAAGGGGATAAAGTTACAACTTTGTCTCTCGGGAGGAGAAAGCCATAATCGAATCATCAAGTATATGTATCCCCGTCGCGTCGCGCTTTTGTTTCGCGTCACTAATAAGTTGACCTRCAGATGAGATAAGGCCCATTTTGTCTCATTCGCGCCATAGATTGCTATGTCGGATATATCCTTAAGACTATCTGTTCGCATCTCTCCCATTACTTTTGTGTCTCGGCGCATCGTTCCCTTCTTTTTTCTTCCTCCTATCTTTGCTTTTGATTTCACTCATTTCCTTTTCAAAGACATTTCGCTTTTCATCCTCAAAAAATCCGATTGCTAATATTTTTACTCAGTTTGCAAACAAGAAAAATTGCACAACTCAAAAAACTGCTATTATCAGTATGGAGATATGACTTCAAGAATATCGCAAGCGACGGTTTTCTCATTCCTTATATACTCCCAATTTTCACAGGTGAGCTATCTTACAAGGATGTTTGAAGCGGAATTTGGAATCCTGAAAATTCCGATCGGAATATTTCCAAAAAAAAAAAATTTTCCTCGGAATTAGGGATTTTTGAACTACCGTAAGTCAAAGGCGCACGCGAAAATTTTGCTCGCGGCTCACGAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTGCAG</site>
                <isoschizomers>
                    <enzyme>BloHII</enzyme>
                    <enzyme>BstMAI</enzyme>
                    <enzyme>PstI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 256 228 16</canonical_bands>
                <polymorphic_bands>728 256 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAACAATCGGATAAGTGTTTA</pcr_primer_p1>
		<pcr_primer_p2>AGAGATGCGAACAGATAGTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAAACAATCGGATAAGTGTTTAGAGAAGAAGGAATAAGATGAAAAGAAGGGGATAAAGTTACAACTTTGTCTCTCGGGAGGAGAAAGCCATAATCGAATCATCAAGTATATGTATCCCCGTCGCGTCGCGCTTTTGTTTCGCGTCACTAATAAGTTGACCTGCAGATGAGATAAGGCCCATTTTGTCTCATTCGCGCCATAGATTGCTATGTCGGATATATCCTTAAGACTATCTGTTCGCATCTCT</canonical_amplicon>
		<polymorphic_amplicon>GAAAACAATCGGATAAGTGTTTAGAGAAGAAGGAATAAGATGAAAAGAAGGGGATAAAGTTACAACTTTGTCTCTCGGGAGGAGAAAGCCATAATCGAATCATCAAGTATATGTATCCCCGTCGCGTCGCGCTTTTGTTTCGCGTCACTAATAAGTTGACCTRCAGATGAGATAAGGCCCATTTTGTCTCATTCGCGCCATAGATTGCTATGTCGGATATATCCTTAAGACTATCTGTTCGCATCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5841</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>140092</contig_pos>
        <strand>+</strand>
        <context>TAATTGAGAA[A/C]TTCTGGATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGGAGGGAATTATTTAAAGCACACTTTTTCAATTTCTCAATAATTGAGAA</left_flank>
        <right_flank>TTCTGGATAATTGAAAATTGATTTTTGCGATTTCTGAAACTCTTAGTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTCATGAGTTCAACCCCTCGTGGGGGTTCTCTATGCAAAAAATCAGGAAAACTTTTTTTTTGGTGTCGGGCCTCCTTTAACGAAAGTTTAAAATATATTCTGGCGTTTCAAGAATAAACGTCGGGTTTCAGAATGTGTCAGGGACATAGTTTTGAAAATCCTCAAATGATCCCAAAATGCTGCAGTGTCTTGTTTTCACCTATTTTATTCAAAATCGTGCCTCCAACCGATAAGGTCACCAAGAAGATTCTTCACACACAAGTTCACCTATTTTATTTGATTTATGTTTTAAAATTAGTTTTTGCTTTTCTTATTGTTCTTTTTTCCATTTTTAAAAATGTTTCGCATCCTAATAGTTTTCGATTTTCAAAGTACAGTTCAAAAAACGTTGTAGTCAATGGGCATTCAATGTGGACTCCTATTTTAGAAGAGACCTTACTAGAAAACTAGGAGGGAATTATTTAAAGCACACTTTTTCAATTTCTCAATAATTGAGAAATTCTGGATAATTGAAAATTGATTTTTGCGATTTCTGAAACTCTTAGTTTTTGAAGTTCTTGTTAACTGATTAATGGAATTTCTAATTCAGAAATTAAGATTTACAAGTGTCTCAGGAGGTCAGGGTATCTGATATTTAAAAAAATTACAACGCAGAATTTTTAATTTTCGAAATTTCGAGTGTTGTGAAATTCTAGCATTCCAAAAATAGAAATCCGGTTTTCAAAAAGATGTAATAATTAGAAAACAATTTTTTTCAATTCCTGAATCTAATATAACGCTCTCCCAGCTATACATTAAAAAATAGAACGACTTGGTTAAATTAGGGTTTTTACGGTATTTGTTTACAACTAATACAATAGTAATTATGAATACAAACGAATTGATGAATAGACAAGGCTCTAAATGATTCCATATCGAATTCGCAATGGTAAGAATGTAAACGCGCCAAACAACAACAAAACATCTGAAAAATCATTTAAAAAGTCAAGAAATTGCGTG</canonical>
            <polymorphic>TGTCATGAGTTCAACCCCTCGTGGGGGTTCTCTATGCAAAAAATCAGGAAAACTTTTTTTTTGGTGTCGGGCCTCCTTTAACGAAAGTTTAAAATATATTCTGGCGTTTCAAGAATAAACGTCGGGTTTCAGAATGTGTCAGGGACATAGTTTTGAAAATCCTCAAATGATCCCAAAATGCTGCAGTGTCTTGTTTTCACCTATTTTATTCAAAATCGTGCCTCCAACCGATAAGGTCACCAAGAAGATTCTTCACACACAAGTTCACCTATTTTATTTGATTTATGTTTTAAAATTAGTTTTTGCTTTTCTTATTGTTCTTTTTTCCATTTTTAAAAATGTTTCGCATCCTAATAGTTTTCGATTTTCAAAGTACAGTTCAAAAAACGTTGTAGTCAATGGGCATTCAATGTGGACTCCTATTTTAGAAGAGACCTTACTAGAAAACTAGGAGGGAATTATTTAAAGCACACTTTTTCAATTTCTCAATAATTGAGAAMTTCTGGATAATTGAAAATTGATTTTTGCGATTTCTGAAACTCTTAGTTTTTGAAGTTCTTGTTAACTGATTAATGGAATTTCTAATTCAGAAATTAAGATTTACAAGTGTCTCAGGAGGTCAGGGTATCTGATATTTAAAAAAATTACAACGCAGAATTTTTAATTTTCGAAATTTCGAGTGTTGTGAAATTCTAGCATTCCAAAAATAGAAATCCGGTTTTCAAAAAGATGTAATAATTAGAAAACAATTTTTTTCAATTCCTGAATCTAATATAACGCTCTCCCAGCTATACATTAAAAAATAGAACGACTTGGTTAAATTAGGGTTTTTACGGTATTTGTTTACAACTAATACAATAGTAATTATGAATACAAACGAATTGATGAATAGACAAGGCTCTAAATGATTCCATATCGAATTCGCAATGGTAAGAATGTAAACGCGCCAAACAACAACAAAACATCTGAAAAATCATTTAAAAAGTCAAGAAATTGCGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>498 230 82 79 78 17 16</canonical_bands>
                <polymorphic_bands>576 230 82 79 17 16</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>293 163 73 62 61 51 48 43 39 23 17 17 13 11 11 10 10 9 9 8 8 7 7 7</canonical_bands>
                <polymorphic_bands>293 163 73 62 61 51 48 43 39 23 18 17 17 13 11 11 10 9 9 8 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAAATGTTTCGCATCCTAATA</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCCATTAATCAGTTAACAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAAAAATGTTTCGCATCCTAATAGTTTTCGATTTTCAAAGTACAGTTCAAAAAACGTTGTAGTCAATGGGCATTCAATGTGGACTCCTATTTTAGAAGAGACCTTACTAGAAAACTAGGAGGGAATTATTTAAAGCACACTTTTTCAATTTCTCAATAATTGAGAAATTCTGGATAATTGAAAATTGATTTTTGCGATTTCTGAAACTCTTAGTTTTTGAAGTTCTTGTTAACTGATTAATGGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>TAAAAATGTTTCGCATCCTAATAGTTTTCGATTTTCAAAGTACAGTTCAAAAAACGTTGTAGTCAATGGGCATTCAATGTGGACTCCTATTTTAGAAGAGACCTTACTAGAAAACTAGGAGGGAATTATTTAAAGCACACTTTTTCAATTTCTCAATAATTGAGAAMTTCTGGATAATTGAAAATTGATTTTTGCGATTTCTGAAACTCTTAGTTTTTGAAGTTCTTGTTAACTGATTAATGGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5842</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>140309</contig_pos>
        <strand>+</strand>
        <context>ATAGAAATCC[A/G]GTTTTCAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGAAATTTCGAGTGTTGTGAAATTCTAGCATTCCAAAAATAGAAATCC</left_flank>
        <right_flank>GTTTTCAAAAAGATGTAATAATTAGAAAACAATTTTTTTCAATTCCTGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGCCTCCAACCGATAAGGTCACCAAGAAGATTCTTCACACACAAGTTCACCTATTTTATTTGATTTATGTTTTAAAATTAGTTTTTGCTTTTCTTATTGTTCTTTTTTCCATTTTTAAAAATGTTTCGCATCCTAATAGTTTTCGATTTTCAAAGTACAGTTCAAAAAACGTTGTAGTCAATGGGCATTCAATGTGGACTCCTATTTTAGAAGAGACCTTACTAGAAAACTAGGAGGGAATTATTTAAAGCACACTTTTTCAATTTCTCAATAATTGAGAAATTCTGGATAATTGAAAATTGATTTTTGCGATTTCTGAAACTCTTAGTTTTTGAAGTTCTTGTTAACTGATTAATGGAATTTCTAATTCAGAAATTAAGATTTACAAGTGTCTCAGGAGGTCAGGGTATCTGATATTTAAAAAAATTACAACGCAGAATTTTTAATTTTCGAAATTTCGAGTGTTGTGAAATTCTAGCATTCCAAAAATAGAAATCCGGTTTTCAAAAAGATGTAATAATTAGAAAACAATTTTTTTCAATTCCTGAATCTAATATAACGCTCTCCCAGCTATACATTAAAAAATAGAACGACTTGGTTAAATTAGGGTTTTTACGGTATTTGTTTACAACTAATACAATAGTAATTATGAATACAAACGAATTGATGAATAGACAAGGCTCTAAATGATTCCATATCGAATTCGCAATGGTAAGAATGTAAACGCGCCAAACAACAACAAAACATCTGAAAAATCATTTAAAAAGTCAAGAAATTGCGTGACCAAAACATTCAAAAAATCGGTTCTAGTTGTTTATTTCGGCCATTAATTTTTTTGGTCCTTAGAATTATTGTTGGTCCTTAGATTATTTTTGGTCCTTGGAAATATTTTAAATGTTTATATTAATTTCCAGCCTGAATTTTCTTTTTCTTTGAATTTTGAATTTTCTGAATTTTTTTTCTGGGGTACAGGATGCCCAGTGAGGAAAGATTTTAGAA</canonical>
            <polymorphic>GTGCCTCCAACCGATAAGGTCACCAAGAAGATTCTTCACACACAAGTTCACCTATTTTATTTGATTTATGTTTTAAAATTAGTTTTTGCTTTTCTTATTGTTCTTTTTTCCATTTTTAAAAATGTTTCGCATCCTAATAGTTTTCGATTTTCAAAGTACAGTTCAAAAAACGTTGTAGTCAATGGGCATTCAATGTGGACTCCTATTTTAGAAGAGACCTTACTAGAAAACTAGGAGGGAATTATTTAAAGCACACTTTTTCAATTTCTCAATAATTGAGAAATTCTGGATAATTGAAAATTGATTTTTGCGATTTCTGAAACTCTTAGTTTTTGAAGTTCTTGTTAACTGATTAATGGAATTTCTAATTCAGAAATTAAGATTTACAAGTGTCTCAGGAGGTCAGGGTATCTGATATTTAAAAAAATTACAACGCAGAATTTTTAATTTTCGAAATTTCGAGTGTTGTGAAATTCTAGCATTCCAAAAATAGAAATCCRGTTTTCAAAAAGATGTAATAATTAGAAAACAATTTTTTTCAATTCCTGAATCTAATATAACGCTCTCCCAGCTATACATTAAAAAATAGAACGACTTGGTTAAATTAGGGTTTTTACGGTATTTGTTTACAACTAATACAATAGTAATTATGAATACAAACGAATTGATGAATAGACAAGGCTCTAAATGATTCCATATCGAATTCGCAATGGTAAGAATGTAAACGCGCCAAACAACAACAAAACATCTGAAAAATCATTTAAAAAGTCAAGAAATTGCGTGACCAAAACATTCAAAAAATCGGTTCTAGTTGTTTATTTCGGCCATTAATTTTTTTGGTCCTTAGAATTATTGTTGGTCCTTAGATTATTTTTGGTCCTTGGAAATATTTTAAATGTTTATATTAATTTCCAGCCTGAATTTTCTTTTTCTTTGAATTTTGAATTTTCTGAATTTTTTTTCTGGGGTACAGGATGCCCAGTGAGGAAAGATTTTAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTACAACGCAGAATTTTTA</pcr_primer_p1>
		<pcr_primer_p2>CTATTCATCAATTCGTTTGTATTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAAATTACAACGCAGAATTTTTAATTTTCGAAATTTCGAGTGTTGTGAAATTCTAGCATTCCAAAAATAGAAATCCGGTTTTCAAAAAGATGTAATAATTAGAAAACAATTTTTTTCAATTCCTGAATCTAATATAACGCTCTCCCAGCTATACATTAAAAAATAGAACGACTTGGTTAAATTAGGGTTTTTACGGTATTTGTTTACAACTAATACAATAGTAATTATGAATACAAACGAATTGATGAATAG</canonical_amplicon>
		<polymorphic_amplicon>AAAATTACAACGCAGAATTTTTAATTTTCGAAATTTCGAGTGTTGTGAAATTCTAGCATTCCAAAAATAGAAATCCRGTTTTCAAAAAGATGTAATAATTAGAAAACAATTTTTTTCAATTCCTGAATCTAATATAACGCTCTCCCAGCTATACATTAAAAAATAGAACGACTTGGTTAAATTAGGGTTTTTACGGTATTTGTTTACAACTAATACAATAGTAATTATGAATACAAACGAATTGATGAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5860</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>140377</contig_pos>
        <strand></strand>
        <context>taacgctctc[C/T]cagctataca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAATTAGAAAACAATTTTTTTCAATTCCTGAATCTAATATAACGCTCTC</left_flank>
        <right_flank>CAGCTATACATTAAAAAATAGAACGACTTGGTTAAATTAGGGTTTTTACG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTTAAAATTAGTTTTTGCTTTTCTTATTGTTCTTTTTTCCATTTTTAAAAATGTTTCGCATCCTAATAGTTTTCGATTTTCAAAGTACAGTTCAAAAAACGTTGTAGTCAATGGGCATTCAATGTGGACTCCTATTTTAGAAGAGACCTTACTAGAAAACTAGGAGGGAATTATTTAAAGCACACTTTTTCAATTTCTCAATAATTGAGAAATTCTGGATAATTGAAAATTGATTTTTGCGATTTCTGAAACTCTTAGTTTTTGAAGTTCTTGTTAACTGATTAATGGAATTTCTAATTCAGAAATTAAGATTTACAAGTGTCTCAGGAGGTCAGGGTATCTGATATTTAAAAAAATTACAACGCAGAATTTTTAATTTTCGAAATTTCGAGTGTTGTGAAATTCTAGCATTCCAAAAATAGAAATCCGGTTTTCAAAAAGATGTAATAATTAGAAAACAATTTTTTTCAATTCCTGAATCTAATATAACGCTCTCCCAGCTATACATTAAAAAATAGAACGACTTGGTTAAATTAGGGTTTTTACGGTATTTGTTTACAACTAATACAATAGTAATTATGAATACAAACGAATTGATGAATAGACAAGGCTCTAAATGATTCCATATCGAATTCGCAATGGTAAGAATGTAAACGCGCCAAACAACAACAAAACATCTGAAAAATCATTTAAAAAGTCAAGAAATTGCGTGACCAAAACATTCAAAAAATCGGTTCTAGTTGTTTATTTCGGCCATTAATTTTTTTGGTCCTTAGAATTATTGTTGGTCCTTAGATTATTTTTGGTCCTTGGAAATATTTTAAATGTTTATATTAATTTCCAGCCTGAATTTTCTTTTTCTTTGAATTTTGAATTTTCTGAATTTTTTTTCTGGGGTACAGGATGCCCAGTGAGGAAAGATTTTAGAACTTATCTTGATTTTCAATGAAAACGGCCTCAATATTACAGCTCTCAATTTAGTGTTGATTTCTCCGTT</canonical>
            <polymorphic>TGTTTTAAAATTAGTTTTTGCTTTTCTTATTGTTCTTTTTTCCATTTTTAAAAATGTTTCGCATCCTAATAGTTTTCGATTTTCAAAGTACAGTTCAAAAAACGTTGTAGTCAATGGGCATTCAATGTGGACTCCTATTTTAGAAGAGACCTTACTAGAAAACTAGGAGGGAATTATTTAAAGCACACTTTTTCAATTTCTCAATAATTGAGAAATTCTGGATAATTGAAAATTGATTTTTGCGATTTCTGAAACTCTTAGTTTTTGAAGTTCTTGTTAACTGATTAATGGAATTTCTAATTCAGAAATTAAGATTTACAAGTGTCTCAGGAGGTCAGGGTATCTGATATTTAAAAAAATTACAACGCAGAATTTTTAATTTTCGAAATTTCGAGTGTTGTGAAATTCTAGCATTCCAAAAATAGAAATCCGGTTTTCAAAAAGATGTAATAATTAGAAAACAATTTTTTTCAATTCCTGAATCTAATATAACGCTCTCYCAGCTATACATTAAAAAATAGAACGACTTGGTTAAATTAGGGTTTTTACGGTATTTGTTTACAACTAATACAATAGTAATTATGAATACAAACGAATTGATGAATAGACAAGGCTCTAAATGATTCCATATCGAATTCGCAATGGTAAGAATGTAAACGCGCCAAACAACAACAAAACATCTGAAAAATCATTTAAAAAGTCAAGAAATTGCGTGACCAAAACATTCAAAAAATCGGTTCTAGTTGTTTATTTCGGCCATTAATTTTTTTGGTCCTTAGAATTATTGTTGGTCCTTAGATTATTTTTGGTCCTTGGAAATATTTTAAATGTTTATATTAATTTCCAGCCTGAATTTTCTTTTTCTTTGAATTTTGAATTTTCTGAATTTTTTTTCTGGGGTACAGGATGCCCAGTGAGGAAAGATTTTAGAACTTATCTTGATTTTCAATGAAAACGGCCTCAATATTACAGCTCTCAATTTAGTGTTGATTTCTCCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTACAACGCAGAATTTTTA</pcr_primer_p1>
		<pcr_primer_p2>CTATTCATCAATTCGTTTGTATTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAAATTACAACGCAGAATTTTTAATTTTCGAAATTTCGAGTGTTGTGAAATTCTAGCATTCCAAAAATAGAAATCCGGTTTTCAAAAAGATGTAATAATTAGAAAACAATTTTTTTCAATTCCTGAATCTAATATAACGCTCTCCCAGCTATACATTAAAAAATAGAACGACTTGGTTAAATTAGGGTTTTTACGGTATTTGTTTACAACTAATACAATAGTAATTATGAATACAAACGAATTGATGAATAG</canonical_amplicon>
		<polymorphic_amplicon>AAAATTACAACGCAGAATTTTTAATTTTCGAAATTTCGAGTGTTGTGAAATTCTAGCATTCCAAAAATAGAAATCCGGTTTTCAAAAAGATGTAATAATTAGAAAACAATTTTTTTCAATTCCTGAATCTAATATAACGCTCTCYCAGCTATACATTAAAAAATAGAACGACTTGGTTAAATTAGGGTTTTTACGGTATTTGTTTACAACTAATACAATAGTAATTATGAATACAAACGAATTGATGAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5915</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>140624</contig_pos>
        <strand>+</strand>
        <context>GTTCTAGTTG[G/T]TTATTTCGGC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAGTCAAGAAATTGCGTGACCAAAACATTCAAAAAATCGGTTCTAGTTG</left_flank>
        <right_flank>TTATTTCGGCCATTAATTTTTTTGGTCCTTAGAATTATTGTTGGTCCTTA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGAAACTCTTAGTTTTTGAAGTTCTTGTTAACTGATTAATGGAATTTCTAATTCAGAAATTAAGATTTACAAGTGTCTCAGGAGGTCAGGGTATCTGATATTTAAAAAAATTACAACGCAGAATTTTTAATTTTCGAAATTTCGAGTGTTGTGAAATTCTAGCATTCCAAAAATAGAAATCCGGTTTTCAAAAAGATGTAATAATTAGAAAACAATTTTTTTCAATTCCTGAATCTAATATAACGCTCTCCCAGCTATACATTAAAAAATAGAACGACTTGGTTAAATTAGGGTTTTTACGGTATTTGTTTACAACTAATACAATAGTAATTATGAATACAAACGAATTGATGAATAGACAAGGCTCTAAATGATTCCATATCGAATTCGCAATGGTAAGAATGTAAACGCGCCAAACAACAACAAAACATCTGAAAAATCATTTAAAAAGTCAAGAAATTGCGTGACCAAAACATTCAAAAAATCGGTTCTAGTTGTTTATTTCGGCCATTAATTTTTTTGGTCCTTAGAATTATTGTTGGTCCTTAGATTATTTTTGGTCCTTGGAAATATTTTAAATGTTTATATTAATTTCCAGCCTGAATTTTCTTTTTCTTTGAATTTTGAATTTTCTGAATTTTTTTTCTGGGGTACAGGATGCCCAGTGAGGAAAGATTTTAGAACTTATCTTGATTTTCAATGAAAACGGCCTCAATATTACAGCTCTCAATTTAGTGTTGATTTCTCCGTTTTTTTTTTGAGATTCAAAATTTCGTTAGGTTGAATTAAAAGGAGACTCTGATAAAAAATGATTATCTCAAAATGGAAACTTCTAGGATGTTCTGGAATCATTTTTGCATTACTCGGAAAACTGAAAACTCAGTTTTAAATTCCTAACACTTCTTTGGAAAATACCTAGAAAAGTCAGTTATGCCGGAAATTCAGAAACATTCCCGAACTTTCTGAAATTGTTCTTTTCGAGCGATTTTTTGATGTTG</canonical>
            <polymorphic>TCTGAAACTCTTAGTTTTTGAAGTTCTTGTTAACTGATTAATGGAATTTCTAATTCAGAAATTAAGATTTACAAGTGTCTCAGGAGGTCAGGGTATCTGATATTTAAAAAAATTACAACGCAGAATTTTTAATTTTCGAAATTTCGAGTGTTGTGAAATTCTAGCATTCCAAAAATAGAAATCCGGTTTTCAAAAAGATGTAATAATTAGAAAACAATTTTTTTCAATTCCTGAATCTAATATAACGCTCTCCCAGCTATACATTAAAAAATAGAACGACTTGGTTAAATTAGGGTTTTTACGGTATTTGTTTACAACTAATACAATAGTAATTATGAATACAAACGAATTGATGAATAGACAAGGCTCTAAATGATTCCATATCGAATTCGCAATGGTAAGAATGTAAACGCGCCAAACAACAACAAAACATCTGAAAAATCATTTAAAAAGTCAAGAAATTGCGTGACCAAAACATTCAAAAAATCGGTTCTAGTTGKTTATTTCGGCCATTAATTTTTTTGGTCCTTAGAATTATTGTTGGTCCTTAGATTATTTTTGGTCCTTGGAAATATTTTAAATGTTTATATTAATTTCCAGCCTGAATTTTCTTTTTCTTTGAATTTTGAATTTTCTGAATTTTTTTTCTGGGGTACAGGATGCCCAGTGAGGAAAGATTTTAGAACTTATCTTGATTTTCAATGAAAACGGCCTCAATATTACAGCTCTCAATTTAGTGTTGATTTCTCCGTTTTTTTTTTGAGATTCAAAATTTCGTTAGGTTGAATTAAAAGGAGACTCTGATAAAAAATGATTATCTCAAAATGGAAACTTCTAGGATGTTCTGGAATCATTTTTGCATTACTCGGAAAACTGAAAACTCAGTTTTAAATTCCTAACACTTCTTTGGAAAATACCTAGAAAAGTCAGTTATGCCGGAAATTCAGAAACATTCCCGAACTTTCTGAAATTGTTCTTTTCGAGCGATTTTTTGATGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATAGACAAGGCTCTAAATGA</pcr_primer_p1>
		<pcr_primer_p2>CAGGCTGGAAATTAATATAAACA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGAATAGACAAGGCTCTAAATGATTCCATATCGAATTCGCAATGGTAAGAATGTAAACGCGCCAAACAACAACAAAACATCTGAAAAATCATTTAAAAAGTCAAGAAATTGCGTGACCAAAACATTCAAAAAATCGGTTCTAGTTGTTTATTTCGGCCATTAATTTTTTTGGTCCTTAGAATTATTGTTGGTCCTTAGATTATTTTTGGTCCTTGGAAATATTTTAAATGTTTATATTAATTTCCAGCCTG</canonical_amplicon>
		<polymorphic_amplicon>TGAATAGACAAGGCTCTAAATGATTCCATATCGAATTCGCAATGGTAAGAATGTAAACGCGCCAAACAACAACAAAACATCTGAAAAATCATTTAAAAAGTCAAGAAATTGCGTGACCAAAACATTCAAAAAATCGGTTCTAGTTGKTTATTTCGGCCATTAATTTTTTTGGTCCTTAGAATTATTGTTGGTCCTTAGATTATTTTTGGTCCTTGGAAATATTTTAAATGTTTATATTAATTTCCAGCCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5916</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>145565</contig_pos>
        <strand>+</strand>
        <context>AGGGAATCAA[C/G]ACTTTCCAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAGGTTTCTTCGGCTGTCTACTCTGATTCTATAGAAGAGCAGGGAATCAA</left_flank>
        <right_flank>ACTTTCCAATCTCGAGGAACACTCGTCTAGGAGGCTCATCAACAGGAAGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTATAATGTCTGCTTTATTATTTGTCTTCTCCCGCCCCTTTTAGTCCGCGCTCCTTTTACATTTCGGCGCCGCCTCTGGGAGATTTTTAGTATAAAAGAAAGAGAGCACTGAAGTTCTTATCACAACTCTTATGGGCACCACTGCTCATATAATACATTGCACAAATTATTCTGCTCTTCTTGCCTTCCTTCTCACTAAACCTTAATTTGAAACTTTCAGACATGCGTTTGTTCATCATTGCTACGATTATCATTGCTTTCGTTGTCGTCTCTGGTGAGGACAACTCTACTGATTCCGTCACCTCTGAAATCAATTCTACTGCAGCAGTCTCTTCAGACAAAATCGCCTCTACATTTGAAAACATTGATGACTCTTTCTCAGATGACTTCTTCTCCGATGAAACCATCACCTCCATCATCACCAACGCTCATGGAATCGGCACTTTCCAGGTTTCTTCGGCTGTCTACTCTGATTCTATAGAAGAGCAGGGAATCAACACTTTCCAATCTCGAGGAACACTCGTCTAGGAGGCTCATCAACAGGAAGATAGACTACTCCAATGCTGGGAACCTCTCGATCCGGTCAATGCTACTAGTGCTTCCATTCTAAGCAAGCCTATCTTCACCCTCTGCTCTTACATCCCTCTGAACTCCAAAGGAATCAAATTCGAGACTTTTGCAGTAAATGGGGTCGGGTCGGAATACTACGACCCACTGCTCTCGGTCTTCGATTATTCAGAGAAGAACTCCGAGGAGGACTACGAAGCAATCGTCATCTGTGCTATAGAAGTGAGAAAACAAATAATTATCCACAGTTTGAAATCATTTTATTTGCAGAAACTCCAACTCCACAAGCCGCCACATCCACCAAGCACGGCTATGAGGTGCCTTTGCAACCAGTCCGGCTGCAATGTCCCTGAACCACTCGAGGAGTTCTTGAAGTTCAATCGCAATGTATTCCCCGAGAAGAACAATGCCACTGACTTGACTGACCACTA</canonical>
            <polymorphic>ATGTATAATGTCTGCTTTATTATTTGTCTTCTCCCGCCCCTTTTAGTCCGCGCTCCTTTTACATTTCGGCGCCGCCTCTGGGAGATTTTTAGTATAAAAGAAAGAGAGCACTGAAGTTCTTATCACAACTCTTATGGGCACCACTGCTCATATAATACATTGCACAAATTATTCTGCTCTTCTTGCCTTCCTTCTCACTAAACCTTAATTTGAAACTTTCAGACATGCGTTTGTTCATCATTGCTACGATTATCATTGCTTTCGTTGTCGTCTCTGGTGAGGACAACTCTACTGATTCCGTCACCTCTGAAATCAATTCTACTGCAGCAGTCTCTTCAGACAAAATCGCCTCTACATTTGAAAACATTGATGACTCTTTCTCAGATGACTTCTTCTCCGATGAAACCATCACCTCCATCATCACCAACGCTCATGGAATCGGCACTTTCCAGGTTTCTTCGGCTGTCTACTCTGATTCTATAGAAGAGCAGGGAATCAASACTTTCCAATCTCGAGGAACACTCGTCTAGGAGGCTCATCAACAGGAAGATAGACTACTCCAATGCTGGGAACCTCTCGATCCGGTCAATGCTACTAGTGCTTCCATTCTAAGCAAGCCTATCTTCACCCTCTGCTCTTACATCCCTCTGAACTCCAAAGGAATCAAATTCGAGACTTTTGCAGTAAATGGGGTCGGGTCGGAATACTACGACCCACTGCTCTCGGTCTTCGATTATTCAGAGAAGAACTCCGAGGAGGACTACGAAGCAATCGTCATCTGTGCTATAGAAGTGAGAAAACAAATAATTATCCACAGTTTGAAATCATTTTATTTGCAGAAACTCCAACTCCACAAGCCGCCACATCCACCAAGCACGGCTATGAGGTGCCTTTGCAACCAGTCCGGCTGCAATGTCCCTGAACCACTCGAGGAGTTCTTGAAGTTCAATCGCAATGTATTCCCCGAGAAGAACAATGCCACTGACTTGACTGACCACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>110 108 89 82 79 67 57 55 39 37 33 27 24 21 21 20 20 16 15 15 13 12 11 10 7 6 3 3</canonical_bands>
                <polymorphic_bands>110 108 89 82 79 77 67 55 39 37 33 27 24 21 21 20 16 15 15 13 12 11 10 7 6 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATGACTCTTTCTCAGATGACT</pcr_primer_p1>
		<pcr_primer_p2>TTGCTTAGAATGGAAGCACTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGATGACTCTTTCTCAGATGACTTCTTCTCCGATGAAACCATCACCTCCATCATCACCAACGCTCATGGAATCGGCACTTTCCAGGTTTCTTCGGCTGTCTACTCTGATTCTATAGAAGAGCAGGGAATCAACACTTTCCAATCTCGAGGAACACTCGTCTAGGAGGCTCATCAACAGGAAGATAGACTACTCCAATGCTGGGAACCTCTCGATCCGGTCAATGCTACTAGTGCTTCCATTCTAAGCAA</canonical_amplicon>
		<polymorphic_amplicon>TGATGACTCTTTCTCAGATGACTTCTTCTCCGATGAAACCATCACCTCCATCATCACCAACGCTCATGGAATCGGCACTTTCCAGGTTTCTTCGGCTGTCTACTCTGATTCTATAGAAGAGCAGGGAATCAASACTTTCCAATCTCGAGGAACACTCGTCTAGGAGGCTCATCAACAGGAAGATAGACTACTCCAATGCTGGGAACCTCTCGATCCGGTCAATGCTACTAGTGCTTCCATTCTAAGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5917</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>145476</contig_pos>
        <strand>+</strand>
        <context>TGAAACCATC[A/G]CCTCCATCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAACATTGATGACTCTTTCTCAGATGACTTCTTCTCCGATGAAACCATC</left_flank>
        <right_flank>CCTCCATCATCACCAACGCTCATGGAATCGGCACTTTCCAGGTTTCTTCG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACAACGAACCACCGCATGCCAGTCAACGTGCCAGACAGCGTGACAGTCTCCTTAATCTCTAACTACTCCAATTTTCAGACTCTTCAAATGTATAATGTCTGCTTTATTATTTGTCTTCTCCCGCCCCTTTTAGTCCGCGCTCCTTTTACATTTCGGCGCCGCCTCTGGGAGATTTTTAGTATAAAAGAAAGAGAGCACTGAAGTTCTTATCACAACTCTTATGGGCACCACTGCTCATATAATACATTGCACAAATTATTCTGCTCTTCTTGCCTTCCTTCTCACTAAACCTTAATTTGAAACTTTCAGACATGCGTTTGTTCATCATTGCTACGATTATCATTGCTTTCGTTGTCGTCTCTGGTGAGGACAACTCTACTGATTCCGTCACCTCTGAAATCAATTCTACTGCAGCAGTCTCTTCAGACAAAATCGCCTCTACATTTGAAAACATTGATGACTCTTTCTCAGATGACTTCTTCTCCGATGAAACCATCACCTCCATCATCACCAACGCTCATGGAATCGGCACTTTCCAGGTTTCTTCGGCTGTCTACTCTGATTCTATAGAAGAGCAGGGAATCAACACTTTCCAATCTCGAGGAACACTCGTCTAGGAGGCTCATCAACAGGAAGATAGACTACTCCAATGCTGGGAACCTCTCGATCCGGTCAATGCTACTAGTGCTTCCATTCTAAGCAAGCCTATCTTCACCCTCTGCTCTTACATCCCTCTGAACTCCAAAGGAATCAAATTCGAGACTTTTGCAGTAAATGGGGTCGGGTCGGAATACTACGACCCACTGCTCTCGGTCTTCGATTATTCAGAGAAGAACTCCGAGGAGGACTACGAAGCAATCGTCATCTGTGCTATAGAAGTGAGAAAACAAATAATTATCCACAGTTTGAAATCATTTTATTTGCAGAAACTCCAACTCCACAAGCCGCCACATCCACCAAGCACGGCTATGAGGTGCCTTTGCAACCAGTCCGGCTGC</canonical>
            <polymorphic>GAACAACGAACCACCGCATGCCAGTCAACGTGCCAGACAGCGTGACAGTCTCCTTAATCTCTAACTACTCCAATTTTCAGACTCTTCAAATGTATAATGTCTGCTTTATTATTTGTCTTCTCCCGCCCCTTTTAGTCCGCGCTCCTTTTACATTTCGGCGCCGCCTCTGGGAGATTTTTAGTATAAAAGAAAGAGAGCACTGAAGTTCTTATCACAACTCTTATGGGCACCACTGCTCATATAATACATTGCACAAATTATTCTGCTCTTCTTGCCTTCCTTCTCACTAAACCTTAATTTGAAACTTTCAGACATGCGTTTGTTCATCATTGCTACGATTATCATTGCTTTCGTTGTCGTCTCTGGTGAGGACAACTCTACTGATTCCGTCACCTCTGAAATCAATTCTACTGCAGCAGTCTCTTCAGACAAAATCGCCTCTACATTTGAAAACATTGATGACTCTTTCTCAGATGACTTCTTCTCCGATGAAACCATCRCCTCCATCATCACCAACGCTCATGGAATCGGCACTTTCCAGGTTTCTTCGGCTGTCTACTCTGATTCTATAGAAGAGCAGGGAATCAACACTTTCCAATCTCGAGGAACACTCGTCTAGGAGGCTCATCAACAGGAAGATAGACTACTCCAATGCTGGGAACCTCTCGATCCGGTCAATGCTACTAGTGCTTCCATTCTAAGCAAGCCTATCTTCACCCTCTGCTCTTACATCCCTCTGAACTCCAAAGGAATCAAATTCGAGACTTTTGCAGTAAATGGGGTCGGGTCGGAATACTACGACCCACTGCTCTCGGTCTTCGATTATTCAGAGAAGAACTCCGAGGAGGACTACGAAGCAATCGTCATCTGTGCTATAGAAGTGAGAAAACAAATAATTATCCACAGTTTGAAATCATTTTATTTGCAGAAACTCCAACTCCACAAGCCGCCACATCCACCAAGCACGGCTATGAGGTGCCTTTGCAACCAGTCCGGCTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>155 108 89 82 79 67 57 39 33 27 24 22 21 21 20 20 19 15 15 13 13 12 12 11 10 7 6 3</canonical_bands>
                <polymorphic_bands>155 120 89 82 79 67 57 39 33 27 24 22 21 21 20 20 19 15 15 13 13 12 11 10 7 6 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCAGTCTCTTCAGACAAAATC</pcr_primer_p1>
		<pcr_primer_p2>TGGAGTAGTCTATCTTCCTGTTG</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>AGCAGTCTCTTCAGACAAAATCGCCTCTACATTTGAAAACATTGATGACTCTTTCTCAGATGACTTCTTCTCCGATGAAACCATCACCTCCATCATCACCAACGCTCATGGAATCGGCACTTTCCAGGTTTCTTCGGCTGTCTACTCTGATTCTATAGAAGAGCAGGGAATCAACACTTTCCAATCTCGAGGAACACTCGTCTAGGAGGCTCATCAACAGGAAGATAGACTACTCCA</canonical_amplicon>
		<polymorphic_amplicon>AGCAGTCTCTTCAGACAAAATCGCCTCTACATTTGAAAACATTGATGACTCTTTCTCAGATGACTTCTTCTCCGATGAAACCATCRCCTCCATCATCACCAACGCTCATGGAATCGGCACTTTCCAGGTTTCTTCGGCTGTCTACTCTGATTCTATAGAAGAGCAGGGAATCAACACTTTCCAATCTCGAGGAACACTCGTCTAGGAGGCTCATCAACAGGAAGATAGACTACTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5918</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>145120</contig_pos>
        <strand>+</strand>
        <context>AGTCCGCGCT[C/G]CTTTTACATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATAATGTCTGCTTTATTATTTGTCTTCTCCCGCCCCTTTTAGTCCGCGCT</left_flank>
        <right_flank>CTTTTACATTTCGGCGCCGCCTCTGGGAGATTTTTAGTATAAAAGAAAGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTATGGCATTCTGAAAGTCAATATGAACACTGGTTCTCCAGATTCGTGCTCAGAACAAGAAAAAATTCACATGTTCCATATCGAAACACAGAACAGGCAAAAAAAAACTAGAGAGCAACTTTTGTTAGCTCTGTAGAAAACTGCCTCTTCTTTGTTCATATCGCATATTGAATATGTTTCTCGTACATTTCCTGGTTTCGTGTTTCTGTAAAACTCGAACTCTTTCAGTGATTAGTAGTCACACTTTTGCAGATAGTTCGTAAGATCAACAATGTGAACAACGAACATTTTCAGAAGAATATGGAACAGAGTTCAAAAATGAATATGGAACAGAGTTCAAAAATGTGTGCGAACGAACAACGAACCACCGCATGCCAGTCAACGTGCCAGACAGCGTGACAGTCTCCTTAATCTCTAACTACTCCAATTTTCAGACTCTTCAAATGTATAATGTCTGCTTTATTATTTGTCTTCTCCCGCCCCTTTTAGTCCGCGCTCCTTTTACATTTCGGCGCCGCCTCTGGGAGATTTTTAGTATAAAAGAAAGAGAGCACTGAAGTTCTTATCACAACTCTTATGGGCACCACTGCTCATATAATACATTGCACAAATTATTCTGCTCTTCTTGCCTTCCTTCTCACTAAACCTTAATTTGAAACTTTCAGACATGCGTTTGTTCATCATTGCTACGATTATCATTGCTTTCGTTGTCGTCTCTGGTGAGGACAACTCTACTGATTCCGTCACCTCTGAAATCAATTCTACTGCAGCAGTCTCTTCAGACAAAATCGCCTCTACATTTGAAAACATTGATGACTCTTTCTCAGATGACTTCTTCTCCGATGAAACCATCACCTCCATCATCACCAACGCTCATGGAATCGGCACTTTCCAGGTTTCTTCGGCTGTCTACTCTGATTCTATAGAAGAGCAGGGAATCAACACTTTCCAATCTCGAGGAACACTCGTCTAGGAGGCTCATCAACAGGAAGATAGAC</canonical>
            <polymorphic>AGCTATGGCATTCTGAAAGTCAATATGAACACTGGTTCTCCAGATTCGTGCTCAGAACAAGAAAAAATTCACATGTTCCATATCGAAACACAGAACAGGCAAAAAAAAACTAGAGAGCAACTTTTGTTAGCTCTGTAGAAAACTGCCTCTTCTTTGTTCATATCGCATATTGAATATGTTTCTCGTACATTTCCTGGTTTCGTGTTTCTGTAAAACTCGAACTCTTTCAGTGATTAGTAGTCACACTTTTGCAGATAGTTCGTAAGATCAACAATGTGAACAACGAACATTTTCAGAAGAATATGGAACAGAGTTCAAAAATGAATATGGAACAGAGTTCAAAAATGTGTGCGAACGAACAACGAACCACCGCATGCCAGTCAACGTGCCAGACAGCGTGACAGTCTCCTTAATCTCTAACTACTCCAATTTTCAGACTCTTCAAATGTATAATGTCTGCTTTATTATTTGTCTTCTCCCGCCCCTTTTAGTCCGCGCTSCTTTTACATTTCGGCGCCGCCTCTGGGAGATTTTTAGTATAAAAGAAAGAGAGCACTGAAGTTCTTATCACAACTCTTATGGGCACCACTGCTCATATAATACATTGCACAAATTATTCTGCTCTTCTTGCCTTCCTTCTCACTAAACCTTAATTTGAAACTTTCAGACATGCGTTTGTTCATCATTGCTACGATTATCATTGCTTTCGTTGTCGTCTCTGGTGAGGACAACTCTACTGATTCCGTCACCTCTGAAATCAATTCTACTGCAGCAGTCTCTTCAGACAAAATCGCCTCTACATTTGAAAACATTGATGACTCTTTCTCAGATGACTTCTTCTCCGATGAAACCATCACCTCCATCATCACCAACGCTCATGGAATCGGCACTTTCCAGGTTTCTTCGGCTGTCTACTCTGATTCTATAGAAGAGCAGGGAATCAACACTTTCCAATCTCGAGGAACACTCGTCTAGGAGGCTCATCAACAGGAAGATAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCAAAAATGAATATGGAACAG</pcr_primer_p1>
		<pcr_primer_p2>ACTTCAGTGCTCTCTTTCTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTCAAAAATGAATATGGAACAGAGTTCAAAAATGTGTGCGAACGAACAACGAACCACCGCATGCCAGTCAACGTGCCAGACAGCGTGACAGTCTCCTTAATCTCTAACTACTCCAATTTTCAGACTCTTCAAATGTATAATGTCTGCTTTATTATTTGTCTTCTCCCGCCCCTTTTAGTCCGCGCTCCTTTTACATTTCGGCGCCGCCTCTGGGAGATTTTTAGTATAAAAGAAAGAGAGCACTGAAGT</canonical_amplicon>
		<polymorphic_amplicon>GTTCAAAAATGAATATGGAACAGAGTTCAAAAATGTGTGCGAACGAACAACGAACCACCGCATGCCAGTCAACGTGCCAGACAGCGTGACAGTCTCCTTAATCTCTAACTACTCCAATTTTCAGACTCTTCAAATGTATAATGTCTGCTTTATTATTTGTCTTCTCCCGCCCCTTTTAGTCCGCGCTSCTTTTACATTTCGGCGCCGCCTCTGGGAGATTTTTAGTATAAAAGAAAGAGAGCACTGAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5919</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>162298</contig_pos>
        <strand>+</strand>
        <context>AAGAGATGGG[A/T]TACAATTATA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGATTTGAAAGAGATGGATATTTATTTGAAGAGAAATAGAAAGAGATGGG</left_flank>
        <right_flank>TACAATTATAATCTTTTTATAGATAAGAATGTCTGAACATTGATAGATCA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTGAACAGAATGTATTATCTTTTGTGGATAACTAAAGTTCAAAACATACAGATTCGAACGAACTTGTTTTGGAAAAAAACATTCGTTTGGTGGCGAAAACCTACAAGCCAAAATTATTTTAAAATGTTTTCAGTTTCAATGTTTATGTAGTTTAAAAACACAGGATTCAATTAAAAAAAACTCAAATGTAGAAACCGCGAGTCTTCCAAATCAATCATGCTGCTCAAACTTTATCAGCAGACCTGGTAATAAAATAAAACATTCAAAAACTTTCAATGACCAAACTGAAGGAAAACATCTCTACAATGACATCAAAAACGCCGCAGAGTACACATTTGAGTGTATTTTTTTTACTTTTTTCTTTCTTCTTTTTATTATCTTTTTGTGGGCATCCCTGAACAAAGATTCGCCGATTACCTTTTATTGTGAAATTTGTTCTTGGAAAAAAGATTTGAAAGAGATGGATATTTATTTGAAGAGAAATAGAAAGAGATGGGTTACAATTATAATCTTTTTATAGATAAGAATGTCTGAACATTGATAGATCATTTACCCATTATCGGATGTAAATCTAAGTTGTGAAAGCTAAGTTTTCGAGTCATGAAAACAAAAAGACAGACAATATGTGTCAATTCATTTGGAATAACATTAACATCAGGGACCAATGAGGAAAGTCTTTGGGAAAATGGAATAAAAAAAATATCTATGAAATTAAAAAAATTGAATAAATTAGTGTAATTTAGTTTTTAAACAAGAAGAACTATGAGACCACACAGTCCACTGATCATCACCGCTTTGCCGATTCCATAATTCGTCCTTTCCTCTGTCATAACCATTTTCTGTCGAATCGCGGTTTGTCCCGCGGCCATTTCTTTACTGACTGCGTCGTACGAGTTCTGAAACTGATATCTGTGTCACTTGATCATTTTGCTGATAGATGTGGAGAGAGAGAAAGCTCAAAGCATGCGAAATTTGATATCTTACGTTCAGCATCTTTC</canonical>
            <polymorphic>TGTTGAACAGAATGTATTATCTTTTGTGGATAACTAAAGTTCAAAACATACAGATTCGAACGAACTTGTTTTGGAAAAAAACATTCGTTTGGTGGCGAAAACCTACAAGCCAAAATTATTTTAAAATGTTTTCAGTTTCAATGTTTATGTAGTTTAAAAACACAGGATTCAATTAAAAAAAACTCAAATGTAGAAACCGCGAGTCTTCCAAATCAATCATGCTGCTCAAACTTTATCAGCAGACCTGGTAATAAAATAAAACATTCAAAAACTTTCAATGACCAAACTGAAGGAAAACATCTCTACAATGACATCAAAAACGCCGCAGAGTACACATTTGAGTGTATTTTTTTTACTTTTTTCTTTCTTCTTTTTATTATCTTTTTGTGGGCATCCCTGAACAAAGATTCGCCGATTACCTTTTATTGTGAAATTTGTTCTTGGAAAAAAGATTTGAAAGAGATGGATATTTATTTGAAGAGAAATAGAAAGAGATGGGWTACAATTATAATCTTTTTATAGATAAGAATGTCTGAACATTGATAGATCATTTACCCATTATCGGATGTAAATCTAAGTTGTGAAAGCTAAGTTTTCGAGTCATGAAAACAAAAAGACAGACAATATGTGTCAATTCATTTGGAATAACATTAACATCAGGGACCAATGAGGAAAGTCTTTGGGAAAATGGAATAAAAAAAATATCTATGAAATTAAAAAAATTGAATAAATTAGTGTAATTTAGTTTTTAAACAAGAAGAACTATGAGACCACACAGTCCACTGATCATCACCGCTTTGCCGATTCCATAATTCGTCCTTTCCTCTGTCATAACCATTTTCTGTCGAATCGCGGTTTGTCCCGCGGCCATTTCTTTACTGACTGCGTCGTACGAGTTCTGAAACTGATATCTGTGTCACTTGATCATTTTGCTGATAGATGTGGAGAGAGAGAAAGCTCAAAGCATGCGAAATTTGATATCTTACGTTCAGCATCTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>498 417 85</canonical_bands>
                <polymorphic_bands>915 85</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGATTACCTTTTATTGTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTATTCCAAATGAATTGACACAT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CCGATTACCTTTTATTGTGAAATTTGTTCTTGGAAAAAAGATTTGAAAGAGATGGATATTTATTTGAAGAGAAATAGAAAGAGATGGGTTACAATTATAATCTTTTTATAGATAAGAATGTCTGAACATTGATAGATCATTTACCCATTATCGGATGTAAATCTAAGTTGTGAAAGCTAAGTTTTCGAGTCATGAAAACAAAAAGACAGACAATATGTGTCAATTCATTTGGAATAA</canonical_amplicon>
		<polymorphic_amplicon>CCGATTACCTTTTATTGTGAAATTTGTTCTTGGAAAAAAGATTTGAAAGAGATGGATATTTATTTGAAGAGAAATAGAAAGAGATGGGWTACAATTATAATCTTTTTATAGATAAGAATGTCTGAACATTGATAGATCATTTACCCATTATCGGATGTAAATCTAAGTTGTGAAAGCTAAGTTTTCGAGTCATGAAAACAAAAAGACAGACAATATGTGTCAATTCATTTGGAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5920</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>162397</contig_pos>
        <strand>+</strand>
        <context>TAAGTTTTCG[A/G]GTCATGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTTACCCATTATCGGATGTAAATCTAAGTTGTGAAAGCTAAGTTTTCG</left_flank>
        <right_flank>GTCATGAAAACAAAAAGACAGACAATATGTGTCAATTCATTTGGAATAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCTACAAGCCAAAATTATTTTAAAATGTTTTCAGTTTCAATGTTTATGTAGTTTAAAAACACAGGATTCAATTAAAAAAAACTCAAATGTAGAAACCGCGAGTCTTCCAAATCAATCATGCTGCTCAAACTTTATCAGCAGACCTGGTAATAAAATAAAACATTCAAAAACTTTCAATGACCAAACTGAAGGAAAACATCTCTACAATGACATCAAAAACGCCGCAGAGTACACATTTGAGTGTATTTTTTTTACTTTTTTCTTTCTTCTTTTTATTATCTTTTTGTGGGCATCCCTGAACAAAGATTCGCCGATTACCTTTTATTGTGAAATTTGTTCTTGGAAAAAAGATTTGAAAGAGATGGATATTTATTTGAAGAGAAATAGAAAGAGATGGGTTACAATTATAATCTTTTTATAGATAAGAATGTCTGAACATTGATAGATCATTTACCCATTATCGGATGTAAATCTAAGTTGTGAAAGCTAAGTTTTCGAGTCATGAAAACAAAAAGACAGACAATATGTGTCAATTCATTTGGAATAACATTAACATCAGGGACCAATGAGGAAAGTCTTTGGGAAAATGGAATAAAAAAAATATCTATGAAATTAAAAAAATTGAATAAATTAGTGTAATTTAGTTTTTAAACAAGAAGAACTATGAGACCACACAGTCCACTGATCATCACCGCTTTGCCGATTCCATAATTCGTCCTTTCCTCTGTCATAACCATTTTCTGTCGAATCGCGGTTTGTCCCGCGGCCATTTCTTTACTGACTGCGTCGTACGAGTTCTGAAACTGATATCTGTGTCACTTGATCATTTTGCTGATAGATGTGGAGAGAGAGAAAGCTCAAAGCATGCGAAATTTGATATCTTACGTTCAGCATCTTTCCTATTCTCTCGTATTGCTCATCGTTTGGCAGCTCTCGAATTATCTCTTTCACGTATTCGGAGACTCCTTTGTGTTTGGTGTCGCGTTGGACAATGGGCA</canonical>
            <polymorphic>AACCTACAAGCCAAAATTATTTTAAAATGTTTTCAGTTTCAATGTTTATGTAGTTTAAAAACACAGGATTCAATTAAAAAAAACTCAAATGTAGAAACCGCGAGTCTTCCAAATCAATCATGCTGCTCAAACTTTATCAGCAGACCTGGTAATAAAATAAAACATTCAAAAACTTTCAATGACCAAACTGAAGGAAAACATCTCTACAATGACATCAAAAACGCCGCAGAGTACACATTTGAGTGTATTTTTTTTACTTTTTTCTTTCTTCTTTTTATTATCTTTTTGTGGGCATCCCTGAACAAAGATTCGCCGATTACCTTTTATTGTGAAATTTGTTCTTGGAAAAAAGATTTGAAAGAGATGGATATTTATTTGAAGAGAAATAGAAAGAGATGGGTTACAATTATAATCTTTTTATAGATAAGAATGTCTGAACATTGATAGATCATTTACCCATTATCGGATGTAAATCTAAGTTGTGAAAGCTAAGTTTTCGRGTCATGAAAACAAAAAGACAGACAATATGTGTCAATTCATTTGGAATAACATTAACATCAGGGACCAATGAGGAAAGTCTTTGGGAAAATGGAATAAAAAAAATATCTATGAAATTAAAAAAATTGAATAAATTAGTGTAATTTAGTTTTTAAACAAGAAGAACTATGAGACCACACAGTCCACTGATCATCACCGCTTTGCCGATTCCATAATTCGTCCTTTCCTCTGTCATAACCATTTTCTGTCGAATCGCGGTTTGTCCCGCGGCCATTTCTTTACTGACTGCGTCGTACGAGTTCTGAAACTGATATCTGTGTCACTTGATCATTTTGCTGATAGATGTGGAGAGAGAGAAAGCTCAAAGCATGCGAAATTTGATATCTTACGTTCAGCATCTTTCCTATTCTCTCGTATTGCTCATCGTTTGGCAGCTCTCGAATTATCTCTTTCACGTATTCGGAGACTCCTTTGTGTTTGGTGTCGCGTTGGACAATGGGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 249 190 63</canonical_bands>
                <polymorphic_bands>747 190 63</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>215 205 205 192 67 44 37 35</canonical_bands>
                <polymorphic_bands>397 215 205 67 44 37 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTGATAGATCATTTACCCATTA</pcr_primer_p1>
		<pcr_primer_p2>GACTGTGTGGTCTCATAGTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CATTGATAGATCATTTACCCATTATCGGATGTAAATCTAAGTTGTGAAAGCTAAGTTTTCGAGTCATGAAAACAAAAAGACAGACAATATGTGTCAATTCATTTGGAATAACATTAACATCAGGGACCAATGAGGAAAGTCTTTGGGAAAATGGAATAAAAAAAATATCTATGAAATTAAAAAAATTGAATAAATTAGTGTAATTTAGTTTTTAAACAAGAAGAACTATGAGACCACACAGTC</canonical_amplicon>
		<polymorphic_amplicon>CATTGATAGATCATTTACCCATTATCGGATGTAAATCTAAGTTGTGAAAGCTAAGTTTTCGRGTCATGAAAACAAAAAGACAGACAATATGTGTCAATTCATTTGGAATAACATTAACATCAGGGACCAATGAGGAAAGTCTTTGGGAAAATGGAATAAAAAAAATATCTATGAAATTAAAAAAATTGAATAAATTAGTGTAATTTAGTTTTTAAACAAGAAGAACTATGAGACCACACAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5921</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>162453</contig_pos>
        <strand>+</strand>
        <context>ATAACATTAA[A/C]ATCAGGGACC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAAACAAAAAGACAGACAATATGTGTCAATTCATTTGGAATAACATTAA</left_flank>
        <right_flank>ATCAGGGACCAATGAGGAAAGTCTTTGGGAAAATGGAATAAAAAAAATAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAACACAGGATTCAATTAAAAAAAACTCAAATGTAGAAACCGCGAGTCTTCCAAATCAATCATGCTGCTCAAACTTTATCAGCAGACCTGGTAATAAAATAAAACATTCAAAAACTTTCAATGACCAAACTGAAGGAAAACATCTCTACAATGACATCAAAAACGCCGCAGAGTACACATTTGAGTGTATTTTTTTTACTTTTTTCTTTCTTCTTTTTATTATCTTTTTGTGGGCATCCCTGAACAAAGATTCGCCGATTACCTTTTATTGTGAAATTTGTTCTTGGAAAAAAGATTTGAAAGAGATGGATATTTATTTGAAGAGAAATAGAAAGAGATGGGTTACAATTATAATCTTTTTATAGATAAGAATGTCTGAACATTGATAGATCATTTACCCATTATCGGATGTAAATCTAAGTTGTGAAAGCTAAGTTTTCGAGTCATGAAAACAAAAAGACAGACAATATGTGTCAATTCATTTGGAATAACATTAACATCAGGGACCAATGAGGAAAGTCTTTGGGAAAATGGAATAAAAAAAATATCTATGAAATTAAAAAAATTGAATAAATTAGTGTAATTTAGTTTTTAAACAAGAAGAACTATGAGACCACACAGTCCACTGATCATCACCGCTTTGCCGATTCCATAATTCGTCCTTTCCTCTGTCATAACCATTTTCTGTCGAATCGCGGTTTGTCCCGCGGCCATTTCTTTACTGACTGCGTCGTACGAGTTCTGAAACTGATATCTGTGTCACTTGATCATTTTGCTGATAGATGTGGAGAGAGAGAAAGCTCAAAGCATGCGAAATTTGATATCTTACGTTCAGCATCTTTCCTATTCTCTCGTATTGCTCATCGTTTGGCAGCTCTCGAATTATCTCTTTCACGTATTCGGAGACTCCTTTGTGTTTGGTGTCGCGTTGGACAATGGGCATGATTTCAATTTTTCCAGGAAATGGTTGGTCAGGAACTGGAACTTGAAACTGTTTT</canonical>
            <polymorphic>AAAAACACAGGATTCAATTAAAAAAAACTCAAATGTAGAAACCGCGAGTCTTCCAAATCAATCATGCTGCTCAAACTTTATCAGCAGACCTGGTAATAAAATAAAACATTCAAAAACTTTCAATGACCAAACTGAAGGAAAACATCTCTACAATGACATCAAAAACGCCGCAGAGTACACATTTGAGTGTATTTTTTTTACTTTTTTCTTTCTTCTTTTTATTATCTTTTTGTGGGCATCCCTGAACAAAGATTCGCCGATTACCTTTTATTGTGAAATTTGTTCTTGGAAAAAAGATTTGAAAGAGATGGATATTTATTTGAAGAGAAATAGAAAGAGATGGGTTACAATTATAATCTTTTTATAGATAAGAATGTCTGAACATTGATAGATCATTTACCCATTATCGGATGTAAATCTAAGTTGTGAAAGCTAAGTTTTCGAGTCATGAAAACAAAAAGACAGACAATATGTGTCAATTCATTTGGAATAACATTAAMATCAGGGACCAATGAGGAAAGTCTTTGGGAAAATGGAATAAAAAAAATATCTATGAAATTAAAAAAATTGAATAAATTAGTGTAATTTAGTTTTTAAACAAGAAGAACTATGAGACCACACAGTCCACTGATCATCACCGCTTTGCCGATTCCATAATTCGTCCTTTCCTCTGTCATAACCATTTTCTGTCGAATCGCGGTTTGTCCCGCGGCCATTTCTTTACTGACTGCGTCGTACGAGTTCTGAAACTGATATCTGTGTCACTTGATCATTTTGCTGATAGATGTGGAGAGAGAGAAAGCTCAAAGCATGCGAAATTTGATATCTTACGTTCAGCATCTTTCCTATTCTCTCGTATTGCTCATCGTTTGGCAGCTCTCGAATTATCTCTTTCACGTATTCGGAGACTCCTTTGTGTTTGGTGTCGCGTTGGACAATGGGCATGATTTCAATTTTTCCAGGAAATGGTTGGTCAGGAACTGGAACTTGAAACTGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCATGAAAACAAAAAGACAGAC</pcr_primer_p1>
		<pcr_primer_p2>GACAGAAAATGGTTATGACAGAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTCATGAAAACAAAAAGACAGACAATATGTGTCAATTCATTTGGAATAACATTAACATCAGGGACCAATGAGGAAAGTCTTTGGGAAAATGGAATAAAAAAAATATCTATGAAATTAAAAAAATTGAATAAATTAGTGTAATTTAGTTTTTAAACAAGAAGAACTATGAGACCACACAGTCCACTGATCATCACCGCTTTGCCGATTCCATAATTCGTCCTTTCCTCTGTCATAACCATTTTCTGTC</canonical_amplicon>
		<polymorphic_amplicon>GTCATGAAAACAAAAAGACAGACAATATGTGTCAATTCATTTGGAATAACATTAAMATCAGGGACCAATGAGGAAAGTCTTTGGGAAAATGGAATAAAAAAAATATCTATGAAATTAAAAAAATTGAATAAATTAGTGTAATTTAGTTTTTAAACAAGAAGAACTATGAGACCACACAGTCCACTGATCATCACCGCTTTGCCGATTCCATAATTCGTCCTTTCCTCTGTCATAACCATTTTCTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5922</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>162473</contig_pos>
        <strand>+</strand>
        <context>CAATGAGGAA[A/T]GTCTTTGGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATGTGTCAATTCATTTGGAATAACATTAACATCAGGGACCAATGAGGAA</left_flank>
        <right_flank>GTCTTTGGGAAAATGGAATAAAAAAAATATCTATGAAATTAAAAAAATTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAACTCAAATGTAGAAACCGCGAGTCTTCCAAATCAATCATGCTGCTCAAACTTTATCAGCAGACCTGGTAATAAAATAAAACATTCAAAAACTTTCAATGACCAAACTGAAGGAAAACATCTCTACAATGACATCAAAAACGCCGCAGAGTACACATTTGAGTGTATTTTTTTTACTTTTTTCTTTCTTCTTTTTATTATCTTTTTGTGGGCATCCCTGAACAAAGATTCGCCGATTACCTTTTATTGTGAAATTTGTTCTTGGAAAAAAGATTTGAAAGAGATGGATATTTATTTGAAGAGAAATAGAAAGAGATGGGTTACAATTATAATCTTTTTATAGATAAGAATGTCTGAACATTGATAGATCATTTACCCATTATCGGATGTAAATCTAAGTTGTGAAAGCTAAGTTTTCGAGTCATGAAAACAAAAAGACAGACAATATGTGTCAATTCATTTGGAATAACATTAACATCAGGGACCAATGAGGAAAGTCTTTGGGAAAATGGAATAAAAAAAATATCTATGAAATTAAAAAAATTGAATAAATTAGTGTAATTTAGTTTTTAAACAAGAAGAACTATGAGACCACACAGTCCACTGATCATCACCGCTTTGCCGATTCCATAATTCGTCCTTTCCTCTGTCATAACCATTTTCTGTCGAATCGCGGTTTGTCCCGCGGCCATTTCTTTACTGACTGCGTCGTACGAGTTCTGAAACTGATATCTGTGTCACTTGATCATTTTGCTGATAGATGTGGAGAGAGAGAAAGCTCAAAGCATGCGAAATTTGATATCTTACGTTCAGCATCTTTCCTATTCTCTCGTATTGCTCATCGTTTGGCAGCTCTCGAATTATCTCTTTCACGTATTCGGAGACTCCTTTGTGTTTGGTGTCGCGTTGGACAATGGGCATGATTTCAATTTTTCCAGGAAATGGTTGGTCAGGAACTGGAACTTGAAACTGTTTTGAAAAACAAACCAACGGTTT</canonical>
            <polymorphic>AAAAAAACTCAAATGTAGAAACCGCGAGTCTTCCAAATCAATCATGCTGCTCAAACTTTATCAGCAGACCTGGTAATAAAATAAAACATTCAAAAACTTTCAATGACCAAACTGAAGGAAAACATCTCTACAATGACATCAAAAACGCCGCAGAGTACACATTTGAGTGTATTTTTTTTACTTTTTTCTTTCTTCTTTTTATTATCTTTTTGTGGGCATCCCTGAACAAAGATTCGCCGATTACCTTTTATTGTGAAATTTGTTCTTGGAAAAAAGATTTGAAAGAGATGGATATTTATTTGAAGAGAAATAGAAAGAGATGGGTTACAATTATAATCTTTTTATAGATAAGAATGTCTGAACATTGATAGATCATTTACCCATTATCGGATGTAAATCTAAGTTGTGAAAGCTAAGTTTTCGAGTCATGAAAACAAAAAGACAGACAATATGTGTCAATTCATTTGGAATAACATTAACATCAGGGACCAATGAGGAAWGTCTTTGGGAAAATGGAATAAAAAAAATATCTATGAAATTAAAAAAATTGAATAAATTAGTGTAATTTAGTTTTTAAACAAGAAGAACTATGAGACCACACAGTCCACTGATCATCACCGCTTTGCCGATTCCATAATTCGTCCTTTCCTCTGTCATAACCATTTTCTGTCGAATCGCGGTTTGTCCCGCGGCCATTTCTTTACTGACTGCGTCGTACGAGTTCTGAAACTGATATCTGTGTCACTTGATCATTTTGCTGATAGATGTGGAGAGAGAGAAAGCTCAAAGCATGCGAAATTTGATATCTTACGTTCAGCATCTTTCCTATTCTCTCGTATTGCTCATCGTTTGGCAGCTCTCGAATTATCTCTTTCACGTATTCGGAGACTCCTTTGTGTTTGGTGTCGCGTTGGACAATGGGCATGATTTCAATTTTTCCAGGAAATGGTTGGTCAGGAACTGGAACTTGAAACTGTTTTGAAAAACAAACCAACGGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCATGAAAACAAAAAGACAGAC</pcr_primer_p1>
		<pcr_primer_p2>GACAGAAAATGGTTATGACAGAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTCATGAAAACAAAAAGACAGACAATATGTGTCAATTCATTTGGAATAACATTAACATCAGGGACCAATGAGGAAAGTCTTTGGGAAAATGGAATAAAAAAAATATCTATGAAATTAAAAAAATTGAATAAATTAGTGTAATTTAGTTTTTAAACAAGAAGAACTATGAGACCACACAGTCCACTGATCATCACCGCTTTGCCGATTCCATAATTCGTCCTTTCCTCTGTCATAACCATTTTCTGTC</canonical_amplicon>
		<polymorphic_amplicon>GTCATGAAAACAAAAAGACAGACAATATGTGTCAATTCATTTGGAATAACATTAACATCAGGGACCAATGAGGAAWGTCTTTGGGAAAATGGAATAAAAAAAATATCTATGAAATTAAAAAAATTGAATAAATTAGTGTAATTTAGTTTTTAAACAAGAAGAACTATGAGACCACACAGTCCACTGATCATCACCGCTTTGCCGATTCCATAATTCGTCCTTTCCTCTGTCATAACCATTTTCTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5966</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>164839</contig_pos>
        <strand>+</strand>
        <context>ATAGTTTCAG[A/G]AATTAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAACCTGAAATTTGATACTACTGTCTCATGAGAAATGCGATAGTTTCAG</left_flank>
        <right_flank>AATTAAAAAAAATTTCAGAACAACAACAAGACTATCAGCTAGAACGAATT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAGTATCTACATATTCATTTCAAAAATTCTCATCAATCACTACCAGCCGCCTATCTGCCCAAATTTTGACACACAAAGTGGCAAGTGGTGGTGAGAAGCCAAAAAAGGAAATTTGAAAAAAGAAAAGTGTGAAAAAGAAGAGGAGTAGTTTTTTCTCTTTTTTTTGTAGAAAAAAACGGATAACGTAATCAAATGTGTTGGGTGCGCGAGTAAAAGTGGAAAGGAAGCGAGTTCAAACGACTTTAGAAGTGTATAACGGGAAATTGAAGGAAAAAGCGAGAAAAAGAAAGAAAAATCCAATTCGAAAACTCCTTCTCATCTTACATGAATCTCACCAAGGAGACCACGCCTCCTTGTGTTTTAAGAGTTTTCCCTGATATCAAAAATAAGAAAATATGTGGAAATTTTGAAAAAAAAGTGCAATGTTTTTTATTCAAAGTGAGAAAAAAAACCTGAAATTTGATACTACTGTCTCATGAGAAATGCGATAGTTTCAGAAATTAAAAAAAATTTCAGAACAACAACAAGACTATCAGCTAGAACGAATTCTCTGAAAAGCAAGGAATGGAGACTCTTTTGTCCATTTTCCACTCGCCTTTTGTTCTGTTCTACGATAATTAAAAATCTCAAGAGGGTTTCTTCTGGTTTGGCGCCATTGCTCGTTAGCGAATCGAATACTAATTCGCTTAAGGAAGTAGTTTTACTATACTAGTTTTTTTCAAGGAGTAACCAACGTTCTGAAGCATTTTTTAACAAATAATAACTGGCTCTCGTTCTGACTTTCTAAATAGCCACCGGAAAAGTACATTCCATTTTTTTATAACCAAACGGGACACAGAGGAAATGTGAAATGTCAAGAACTACACCGGGAAGTGAGAGAAGAAAATGTGATGTCCGGCCATAAAATTGCACAAAAGTGGCCCACTTTGATGGGAGAGAAGAAAGATAGTGAACCTTTTGAAGAACTACGTTTTTGGGTTCCCAAAATGAAAAGGATA</canonical>
            <polymorphic>ATGAGTATCTACATATTCATTTCAAAAATTCTCATCAATCACTACCAGCCGCCTATCTGCCCAAATTTTGACACACAAAGTGGCAAGTGGTGGTGAGAAGCCAAAAAAGGAAATTTGAAAAAAGAAAAGTGTGAAAAAGAAGAGGAGTAGTTTTTTCTCTTTTTTTTGTAGAAAAAAACGGATAACGTAATCAAATGTGTTGGGTGCGCGAGTAAAAGTGGAAAGGAAGCGAGTTCAAACGACTTTAGAAGTGTATAACGGGAAATTGAAGGAAAAAGCGAGAAAAAGAAAGAAAAATCCAATTCGAAAACTCCTTCTCATCTTACATGAATCTCACCAAGGAGACCACGCCTCCTTGTGTTTTAAGAGTTTTCCCTGATATCAAAAATAAGAAAATATGTGGAAATTTTGAAAAAAAAGTGCAATGTTTTTTATTCAAAGTGAGAAAAAAAACCTGAAATTTGATACTACTGTCTCATGAGAAATGCGATAGTTTCAGRAATTAAAAAAAATTTCAGAACAACAACAAGACTATCAGCTAGAACGAATTCTCTGAAAAGCAAGGAATGGAGACTCTTTTGTCCATTTTCCACTCGCCTTTTGTTCTGTTCTACGATAATTAAAAATCTCAAGAGGGTTTCTTCTGGTTTGGCGCCATTGCTCGTTAGCGAATCGAATACTAATTCGCTTAAGGAAGTAGTTTTACTATACTAGTTTTTTTCAAGGAGTAACCAACGTTCTGAAGCATTTTTTAACAAATAATAACTGGCTCTCGTTCTGACTTTCTAAATAGCCACCGGAAAAGTACATTCCATTTTTTTATAACCAAACGGGACACAGAGGAAATGTGAAATGTCAAGAACTACACCGGGAAGTGAGAGAAGAAAATGTGATGTCCGGCCATAAAATTGCACAAAAGTGGCCCACTTTGATGGGAGAGAAGAAAGATAGTGAACCTTTTGAAGAACTACGTTTTTGGGTTCCCAAAATGAAAAGGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>498 221 187 38 37 19</canonical_bands>
                <polymorphic_bands>517 221 187 38 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAAATATGTGGAAATTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>GAAACCCTCTTGAGATTTTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGAAAATATGTGGAAATTTTGAAAAAAAAGTGCAATGTTTTTTATTCAAAGTGAGAAAAAAAACCTGAAATTTGATACTACTGTCTCATGAGAAATGCGATAGTTTCAGAAATTAAAAAAAATTTCAGAACAACAACAAGACTATCAGCTAGAACGAATTCTCTGAAAAGCAAGGAATGGAGACTCTTTTGTCCATTTTCCACTCGCCTTTTGTTCTGTTCTACGATAATTAAAAATCTCAAGAGGGTTTC</canonical_amplicon>
		<polymorphic_amplicon>AGAAAATATGTGGAAATTTTGAAAAAAAAGTGCAATGTTTTTTATTCAAAGTGAGAAAAAAAACCTGAAATTTGATACTACTGTCTCATGAGAAATGCGATAGTTTCAGRAATTAAAAAAAATTTCAGAACAACAACAAGACTATCAGCTAGAACGAATTCTCTGAAAAGCAAGGAATGGAGACTCTTTTGTCCATTTTCCACTCGCCTTTTGTTCTGTTCTACGATAATTAAAAATCTCAAGAGGGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5967</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>164584</contig_pos>
        <strand>+</strand>
        <context>TCAAACGACT[C/T]TAGAAGTGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGTGTTGGGTGCGCGAGTAAAAGTGGAAAGGAAGCGAGTTCAAACGACT</left_flank>
        <right_flank>TAGAAGTGTATAACGGGAAATTGAAGGAAAAAGCGAGAAAAAGAAAGAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAAGAAAAATGAGTAGGAAGAAGAGAACACACGTTTTTGTGGTTGTACAACAGACACTTTGAGAATGTTAGTTGCTGTGGAAATCTGAGAAAAAAAATAAAGAAGAGAAGAGTTAGAAAAATAAAAACGGAAACCTTACAAATTTGTAAATTGGTGAAAATTGGAACATGAAAATTTTCTCACCCCCATCCCATTATTTCATTCTCAAGTGACATTGGATAGGGAGTGAGAGTAACCCATCCCTTGTGTCCAGATGAGTATCTACATATTCATTTCAAAAATTCTCATCAATCACTACCAGCCGCCTATCTGCCCAAATTTTGACACACAAAGTGGCAAGTGGTGGTGAGAAGCCAAAAAAGGAAATTTGAAAAAAGAAAAGTGTGAAAAAGAAGAGGAGTAGTTTTTTCTCTTTTTTTTGTAGAAAAAAACGGATAACGTAATCAAATGTGTTGGGTGCGCGAGTAAAAGTGGAAAGGAAGCGAGTTCAAACGACTTTAGAAGTGTATAACGGGAAATTGAAGGAAAAAGCGAGAAAAAGAAAGAAAAATCCAATTCGAAAACTCCTTCTCATCTTACATGAATCTCACCAAGGAGACCACGCCTCCTTGTGTTTTAAGAGTTTTCCCTGATATCAAAAATAAGAAAATATGTGGAAATTTTGAAAAAAAAGTGCAATGTTTTTTATTCAAAGTGAGAAAAAAAACCTGAAATTTGATACTACTGTCTCATGAGAAATGCGATAGTTTCAGAAATTAAAAAAAATTTCAGAACAACAACAAGACTATCAGCTAGAACGAATTCTCTGAAAAGCAAGGAATGGAGACTCTTTTGTCCATTTTCCACTCGCCTTTTGTTCTGTTCTACGATAATTAAAAATCTCAAGAGGGTTTCTTCTGGTTTGGCGCCATTGCTCGTTAGCGAATCGAATACTAATTCGCTTAAGGAAGTAGTTTTACTATACTAGTTTTTTTCAAGGAGTAACCAACGTTCTGAAG</canonical>
            <polymorphic>AGAAAGAAAAATGAGTAGGAAGAAGAGAACACACGTTTTTGTGGTTGTACAACAGACACTTTGAGAATGTTAGTTGCTGTGGAAATCTGAGAAAAAAAATAAAGAAGAGAAGAGTTAGAAAAATAAAAACGGAAACCTTACAAATTTGTAAATTGGTGAAAATTGGAACATGAAAATTTTCTCACCCCCATCCCATTATTTCATTCTCAAGTGACATTGGATAGGGAGTGAGAGTAACCCATCCCTTGTGTCCAGATGAGTATCTACATATTCATTTCAAAAATTCTCATCAATCACTACCAGCCGCCTATCTGCCCAAATTTTGACACACAAAGTGGCAAGTGGTGGTGAGAAGCCAAAAAAGGAAATTTGAAAAAAGAAAAGTGTGAAAAAGAAGAGGAGTAGTTTTTTCTCTTTTTTTTGTAGAAAAAAACGGATAACGTAATCAAATGTGTTGGGTGCGCGAGTAAAAGTGGAAAGGAAGCGAGTTCAAACGACTYTAGAAGTGTATAACGGGAAATTGAAGGAAAAAGCGAGAAAAAGAAAGAAAAATCCAATTCGAAAACTCCTTCTCATCTTACATGAATCTCACCAAGGAGACCACGCCTCCTTGTGTTTTAAGAGTTTTCCCTGATATCAAAAATAAGAAAATATGTGGAAATTTTGAAAAAAAAGTGCAATGTTTTTTATTCAAAGTGAGAAAAAAAACCTGAAATTTGATACTACTGTCTCATGAGAAATGCGATAGTTTCAGAAATTAAAAAAAATTTCAGAACAACAACAAGACTATCAGCTAGAACGAATTCTCTGAAAAGCAAGGAATGGAGACTCTTTTGTCCATTTTCCACTCGCCTTTTGTTCTGTTCTACGATAATTAAAAATCTCAAGAGGGTTTCTTCTGGTTTGGCGCCATTGCTCGTTAGCGAATCGAATACTAATTCGCTTAAGGAAGTAGTTTTACTATACTAGTTTTTTTCAAGGAGTAACCAACGTTCTGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGTGTGAAAAAGAAGAGGAGT</pcr_primer_p1>
		<pcr_primer_p2>GAAAACTCTTAAAACACAAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAGTGTGAAAAAGAAGAGGAGTAGTTTTTTCTCTTTTTTTTGTAGAAAAAAACGGATAACGTAATCAAATGTGTTGGGTGCGCGAGTAAAAGTGGAAAGGAAGCGAGTTCAAACGACTTTAGAAGTGTATAACGGGAAATTGAAGGAAAAAGCGAGAAAAAGAAAGAAAAATCCAATTCGAAAACTCCTTCTCATCTTACATGAATCTCACCAAGGAGACCACGCCTCCTTGTGTTTTAAGAGTTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAGTGTGAAAAAGAAGAGGAGTAGTTTTTTCTCTTTTTTTTGTAGAAAAAAACGGATAACGTAATCAAATGTGTTGGGTGCGCGAGTAAAAGTGGAAAGGAAGCGAGTTCAAACGACTYTAGAAGTGTATAACGGGAAATTGAAGGAAAAAGCGAGAAAAAGAAAGAAAAATCCAATTCGAAAACTCCTTCTCATCTTACATGAATCTCACCAAGGAGACCACGCCTCCTTGTGTTTTAAGAGTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5968</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>192607</contig_pos>
        <strand>+</strand>
        <context>TTCTCTACTC[C/T]TTCTGGCAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGCATGCGTTTCTCCGAGAATAACCCGAAGAAATAGGTTTTCTCTACTC</left_flank>
        <right_flank>TTCTGGCAATGCCTCAGTTACCGTCTCTACAACATCCATCATCACGGGAC</right_flank>
        <qual_score>149</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAATATCAAGAAGTGAAGAGCTCAATGTGTTTTCAGATGATGGTCGCAGCATGTGAGCAGATGAACAATCAAGGTAGGCGGCGCTTCTGAAAAATGGAAATTAAGAAATGTTCTTTTAAAAAGTTTTTGTGACTCACCTCGACTGAATTTTGGATTTCCCCTTGAACGGCGATTTTTTCATAAGCGCGGAACGCGTGTCAAGTCCAGCAGTCTTGATATGACTTCCCATTTGTTGGATATTCTTCCAGATCGGCGTTAGAGACGTGTTGACTGTGCTGGTTGCGTTTCCGTTGTCAAACACGGATGTGTTAATGGCTGATCGTGTTCCATTTGCTCGGCCTGTGTTCGAGCGTAAGTTCCGGTTGAGAAAGGAATAGAAGAGCCAGTTGAACGCGGATTGGGCGTAGGTGAGAGAGTGTAGAATGTAGATCATGGCGATTTCGATGTTGTGCATGCGTTTCTCCGAGAATAACCCGAAGAAATAGGTTTTCTCTACTCCTTCTGGCAATGCCTCAGTTACCGTCTCTACAACATCCATCATCACGGGACCACCTGAAAAAAGCAACACATAGTTGTGGTTGAACTGTGAATAAAGTCAAAATGATTCTAGGCATTCAAAAGTCAATCTAATTCAAAAAATCTACTTGAAATTCTGCAGTCATTTCATGTGTTCTTCATTTTCTTAAGCTCTACACAAAAACAAAGTAATGAGAAGAGACAATTTCTTTCCTGAAAAATAGACGCTCTCAAGACCCCTTTAGTGGTCCATGGATGTTTTGATAGCTTTGGTAGCTTTGATAGCTTCGATAGGTCACTCACCATCTCTGTATTTTTCCAATAACCTCACAACGAGATAGTGAAACCGCATTGTCCAATAAGGGGTCCAGCAAATGAAGTAGAAAGCAACCACCATCACACTGCACTTGACGACTCTACCCAAAGAAATGCTTGTTTTCTTTCCAACAGTTGAAAAACGGGTATGACGGTAGAGTTTATGAA</canonical>
            <polymorphic>GGAATATCAAGAAGTGAAGAGCTCAATGTGTTTTCAGATGATGGTCGCAGCATGTGAGCAGATGAACAATCAAGGTAGGCGGCGCTTCTGAAAAATGGAAATTAAGAAATGTTCTTTTAAAAAGTTTTTGTGACTCACCTCGACTGAATTTTGGATTTCCCCTTGAACGGCGATTTTTTCATAAGCGCGGAACGCGTGTCAAGTCCAGCAGTCTTGATATGACTTCCCATTTGTTGGATATTCTTCCAGATCGGCGTTAGAGACGTGTTGACTGTGCTGGTTGCGTTTCCGTTGTCAAACACGGATGTGTTAATGGCTGATCGTGTTCCATTTGCTCGGCCTGTGTTCGAGCGTAAGTTCCGGTTGAGAAAGGAATAGAAGAGCCAGTTGAACGCGGATTGGGCGTAGGTGAGAGAGTGTAGAATGTAGATCATGGCGATTTCGATGTTGTGCATGCGTTTCTCCGAGAATAACCCGAAGAAATAGGTTTTCTCTACTCYTTCTGGCAATGCCTCAGTTACCGTCTCTACAACATCCATCATCACGGGACCACCTGAAAAAAGCAACACATAGTTGTGGTTGAACTGTGAATAAAGTCAAAATGATTCTAGGCATTCAAAAGTCAATCTAATTCAAAAAATCTACTTGAAATTCTGCAGTCATTTCATGTGTTCTTCATTTTCTTAAGCTCTACACAAAAACAAAGTAATGAGAAGAGACAATTTCTTTCCTGAAAAATAGACGCTCTCAAGACCCCTTTAGTGGTCCATGGATGTTTTGATAGCTTTGGTAGCTTTGATAGCTTCGATAGGTCACTCACCATCTCTGTATTTTTCCAATAACCTCACAACGAGATAGTGAAACCGCATTGTCCAATAAGGGGTCCAGCAAATGAAGTAGAAAGCAACCACCATCACACTGCACTTGACGACTCTACCCAAAGAAATGCTTGTTTTCTTTCCAACAGTTGAAAAACGGGTATGACGGTAGAGTTTATGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAGGAATAGAAGAGCCAGT</pcr_primer_p1>
		<pcr_primer_p2>AATGCCTAGAATCATTTTGACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAAGGAATAGAAGAGCCAGTTGAACGCGGATTGGGCGTAGGTGAGAGAGTGTAGAATGTAGATCATGGCGATTTCGATGTTGTGCATGCGTTTCTCCGAGAATAACCCGAAGAAATAGGTTTTCTCTACTCCTTCTGGCAATGCCTCAGTTACCGTCTCTACAACATCCATCATCACGGGACCACCTGAAAAAAGCAACACATAGTTGTGGTTGAACTGTGAATAAAGTCAAAATGATTCTAGGCATT</canonical_amplicon>
		<polymorphic_amplicon>AGAAAGGAATAGAAGAGCCAGTTGAACGCGGATTGGGCGTAGGTGAGAGAGTGTAGAATGTAGATCATGGCGATTTCGATGTTGTGCATGCGTTTCTCCGAGAATAACCCGAAGAAATAGGTTTTCTCTACTCYTTCTGGCAATGCCTCAGTTACCGTCTCTACAACATCCATCATCACGGGACCACCTGAAAAAAGCAACACATAGTTGTGGTTGAACTGTGAATAAAGTCAAAATGATTCTAGGCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5970</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>229750</contig_pos>
        <strand>+</strand>
        <context>AATTAATATT[A/G]AATGATATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGATATTCAAACCAACTAAAATCTGGAGAAAGCTAAAAAAATTAATATT</left_flank>
        <right_flank>AATGATATTTTATTGCTAAGTACGAATATAGCTCTGATATTTGATTGCTA</right_flank>
        <qual_score>149</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGTTTTTTTTGGTCGACCGTGAAAAAAATTAAAGAACGTTTTTTTGCAATTAGATGAAAGCAAAATCAGACTGTCTAGGAGGACAAAAATAATCTCACTTCGAGAAAACCTGTAAACCTACCATGCTATTTCCGAATCCAATAGCGGTCCATCCAGATCCATTAGGAGCGATTCCTGTCAAGACAACACGGAAGTGAATTGTGTTTCCTCGAACACCATAAGTGATTTGTTGCCCATTGGTGACAAATGTGCATGGTGTTGATTCAACATTTGCTAAAAATTTGGATTTATTTCTTTTGGAAAATTTCAAAGCTAAGATGAGACTCCAGTTAACAGTGATCGGTTTGAAACATGCTTATATGAAACTTGTTTCATTTGCATTTTTGAGCTGATCTTTGTGTTTTGTTGCAATATTTTTTTCCGCATTACGGTATTCTAATTAGCTATCTCGATATTCAAACCAACTAAAATCTGGAGAAAGCTAAAAAAATTAATATTGAATGATATTTTATTGCTAAGTACGAATATAGCTCTGATATTTGATTGCTACAGTACGAATATAGCTCATTTCTGGAGTCTCAATGAGTGATTCCTCTCAATATTCCAAAGTTCAATGTTCCAAGGATACTATTTTCGTTACGCCAAACAATCATAAACTGACCGATTAGAAGGGAAAGCAATGCAACGGAGATTAATCGAATCATGAGGAAAATGCGATTTGACTTGGATAACAGAAGGACAAAGAGGGGATATATATCTCTTCTTCTGGGTGGGTGGAAGGTGCCGAAATGAGAAGTGATGTGATCAGGCGGTGATGATGCCCTGCGGTTTTGTCCAAGTGTCCGACCTGTCTCTTCTTTGATGGCATCGGTCGTCCGGTGCGTGACGCCGCCCCTCAACCGAGACACTTTTTGAAGGAGAAGGCGTTACGAAAATTCGGAAAGGAAACAAAGGTCACGGTTTTTTGAAGAGAATAGACATACATACAAGACACAAAAA</canonical>
            <polymorphic>GGGTTTTTTTTGGTCGACCGTGAAAAAAATTAAAGAACGTTTTTTTGCAATTAGATGAAAGCAAAATCAGACTGTCTAGGAGGACAAAAATAATCTCACTTCGAGAAAACCTGTAAACCTACCATGCTATTTCCGAATCCAATAGCGGTCCATCCAGATCCATTAGGAGCGATTCCTGTCAAGACAACACGGAAGTGAATTGTGTTTCCTCGAACACCATAAGTGATTTGTTGCCCATTGGTGACAAATGTGCATGGTGTTGATTCAACATTTGCTAAAAATTTGGATTTATTTCTTTTGGAAAATTTCAAAGCTAAGATGAGACTCCAGTTAACAGTGATCGGTTTGAAACATGCTTATATGAAACTTGTTTCATTTGCATTTTTGAGCTGATCTTTGTGTTTTGTTGCAATATTTTTTTCCGCATTACGGTATTCTAATTAGCTATCTCGATATTCAAACCAACTAAAATCTGGAGAAAGCTAAAAAAATTAATATTRAATGATATTTTATTGCTAAGTACGAATATAGCTCTGATATTTGATTGCTACAGTACGAATATAGCTCATTTCTGGAGTCTCAATGAGTGATTCCTCTCAATATTCCAAAGTTCAATGTTCCAAGGATACTATTTTCGTTACGCCAAACAATCATAAACTGACCGATTAGAAGGGAAAGCAATGCAACGGAGATTAATCGAATCATGAGGAAAATGCGATTTGACTTGGATAACAGAAGGACAAAGAGGGGATATATATCTCTTCTTCTGGGTGGGTGGAAGGTGCCGAAATGAGAAGTGATGTGATCAGGCGGTGATGATGCCCTGCGGTTTTGTCCAAGTGTCCGACCTGTCTCTTCTTTGATGGCATCGGTCGTCCGGTGCGTGACGCCGCCCCTCAACCGAGACACTTTTTGAAGGAGAAGGCGTTACGAAAATTCGGAAAGGAAACAAAGGTCACGGTTTTTTGAAGAGAATAGACATACATACAAGACACAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGCTAAGATGAGACTCCAGTT</pcr_primer_p1>
		<pcr_primer_p2>CGTACTGTAGCAATCAAATATCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAGCTAAGATGAGACTCCAGTTAACAGTGATCGGTTTGAAACATGCTTATATGAAACTTGTTTCATTTGCATTTTTGAGCTGATCTTTGTGTTTTGTTGCAATATTTTTTTCCGCATTACGGTATTCTAATTAGCTATCTCGATATTCAAACCAACTAAAATCTGGAGAAAGCTAAAAAAATTAATATTGAATGATATTTTATTGCTAAGTACGAATATAGCTCTGATATTTGATTGCTACAGTACG</canonical_amplicon>
		<polymorphic_amplicon>AAAGCTAAGATGAGACTCCAGTTAACAGTGATCGGTTTGAAACATGCTTATATGAAACTTGTTTCATTTGCATTTTTGAGCTGATCTTTGTGTTTTGTTGCAATATTTTTTTCCGCATTACGGTATTCTAATTAGCTATCTCGATATTCAAACCAACTAAAATCTGGAGAAAGCTAAAAAAATTAATATTRAATGATATTTTATTGCTAAGTACGAATATAGCTCTGATATTTGATTGCTACAGTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5972</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>243240</contig_pos>
        <strand></strand>
        <context>TGAAATTTTA[G/A]GGGTTGTTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAGAATCAAGAAGAAGACGTGACTGTTTTTTTTTTGAATTTGAAATTTTA</left_flank>
        <right_flank>GGGTTGTTAAAATAAGTAGAACTCCAAGTTTTGATTATCAAAAGTTCACT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAATTGTGTAAGTATATGGGTGTCTATGTATGTATATTCCTGTCCTTTTTGTCCGGGCTGCGATCCTCTTCTTTAACTTTTCCACTTCTCCATTTCCTTGGATTCCCAAAAAATTTCAATCTCAAGAACGAGGATTTAGATGGATCACATCCGTTGGTGAAAACAAAAAAGGGAGGAAAACGAGAAGGACGCGTACCCTTTTTCGCCTTCGAGTTTTTAAATTTATGCACAAATACATCAAATTAATGAATGAGCAAAAGCAGAAGCAGAGGAGAGAGGAGCAATGAAGGGCGGGAGGCGGAGAATGAGAAGGGCATAGGCAAAAACCACGACAGATCGGTATCTTTTGAAGCTAAGAATGGCGTAGGAAGCAAGGGTTGACACTGAAGAATAACAGAAATGAAGGATTGGAGATGAGAACAAGAAGAAGGAACCATGGGAAAAGTGTGAGAATCAAGAAGAAGACGTGACTGTTTTTTTTTTGAATTTGAAATTTTAGGGGTTGTTAAAATAAGTAGAACTCCAAGTTTTGATTATCAAAAGTTCACTAGTTTATATATTTTTGCGAAATTAGGAAAACACGCAATTTGCAATTGCTTTTTGGCCGTTTTGCACTATTCTGGAGTCTTAAGCTTGCTGGTCAAGTTTCCAATCAACTTGAAAAAATCGAAGGGTATGAAACAGACCTAGATTGAAAACTTTGAACTAGCAGAATTTTTGAAAAATTCTTAGTTTCCCAGGTTATTGCCAATTTTGGAAGACACCTGTTGTCTTCACGTTTTCCGTTAAAAAAACGGGCCGAAAAAGGAAATAACAGGAATCGGCAAATGACCAAAAAACTAAGAATCTTCTAAAAATTCTGTAGAAGCAATGTTTTCAATCTAGGTCTGTTTTACACCCTCCAAAAGTTTCAGAGAGATTGAAAAATTTACAGCCGAGTTCCAGACTCCTGAAAATGATCAAAATAACCGTGACTGAGAAGTACCGTTTTCTGTATGT</canonical>
            <polymorphic>GCAATTGTGTAAGTATATGGGTGTCTATGTATGTATATTCCTGTCCTTTTTGTCCGGGCTGCGATCCTCTTCTTTAACTTTTCCACTTCTCCATTTCCTTGGATTCCCAAAAAATTTCAATCTCAAGAACGAGGATTTAGATGGATCACATCCGTTGGTGAAAACAAAAAAGGGAGGAAAACGAGAAGGACGCGTACCCTTTTTCGCCTTCGAGTTTTTAAATTTATGCACAAATACATCAAATTAATGAATGAGCAAAAGCAGAAGCAGAGGAGAGAGGAGCAATGAAGGGCGGGAGGCGGAGAATGAGAAGGGCATAGGCAAAAACCACGACAGATCGGTATCTTTTGAAGCTAAGAATGGCGTAGGAAGCAAGGGTTGACACTGAAGAATAACAGAAATGAAGGATTGGAGATGAGAACAAGAAGAAGGAACCATGGGAAAAGTGTGAGAATCAAGAAGAAGACGTGACTGTTTTTTTTTTGAATTTGAAATTTTARGGGTTGTTAAAATAAGTAGAACTCCAAGTTTTGATTATCAAAAGTTCACTAGTTTATATATTTTTGCGAAATTAGGAAAACACGCAATTTGCAATTGCTTTTTGGCCGTTTTGCACTATTCTGGAGTCTTAAGCTTGCTGGTCAAGTTTCCAATCAACTTGAAAAAATCGAAGGGTATGAAACAGACCTAGATTGAAAACTTTGAACTAGCAGAATTTTTGAAAAATTCTTAGTTTCCCAGGTTATTGCCAATTTTGGAAGACACCTGTTGTCTTCACGTTTTCCGTTAAAAAAACGGGCCGAAAAAGGAAATAACAGGAATCGGCAAATGACCAAAAAACTAAGAATCTTCTAAAAATTCTGTAGAAGCAATGTTTTCAATCTAGGTCTGTTTTACACCCTCCAAAAGTTTCAGAGAGATTGAAAAATTTACAGCCGAGTTCCAGACTCCTGAAAATGATCAAAATAACCGTGACTGAGAAGTACCGTTTTCTGTATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAGATCGGTATCTTTTGAAG</pcr_primer_p1>
		<pcr_primer_p2>CCTAATTTCGCAAAAATATATAAAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GACAGATCGGTATCTTTTGAAGCTAAGAATGGCGTAGGAAGCAAGGGTTGACACTGAAGAATAACAGAAATGAAGGATTGGAGATGAGAACAAGAAGAAGGAACCATGGGAAAAGTGTGAGAATCAAGAAGAAGACGTGACTGTTTTTTTTTTGAATTTGAAATTTTAGGGGTTGTTAAAATAAGTAGAACTCCAAGTTTTGATTATCAAAAGTTCACTAGTTTATATATTTTTGCGAAATTAGG</canonical_amplicon>
		<polymorphic_amplicon>GACAGATCGGTATCTTTTGAAGCTAAGAATGGCGTAGGAAGCAAGGGTTGACACTGAAGAATAACAGAAATGAAGGATTGGAGATGAGAACAAGAAGAAGGAACCATGGGAAAAGTGTGAGAATCAAGAAGAAGACGTGACTGTTTTTTTTTTGAATTTGAAATTTTARGGGTTGTTAAAATAAGTAGAACTCCAAGTTTTGATTATCAAAAGTTCACTAGTTTATATATTTTTGCGAAATTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5973</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>255811</contig_pos>
        <strand>+</strand>
        <context>AAAACTTACC[A/G]ATAAAAAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGATTCCTAAAACTGAAAATTAGTATTTTTGTGTTTATTGAAAACTTACC</left_flank>
        <right_flank>ATAAAAAATGTAGCTGGAACACCGATTCGGATTTTTTCGATAAGAGGGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTAGTAGAAATCACAAGTGGCTCTGATTGACACTTTACCACATTTTAGAAAATATTTCTTTAAAGAATATTGTTTTGAATGTTCGCAATCATTCTGCCATTGAACACCAGAAAAAGATTTCAGGATATTCAAAAAATGTTATTCCATATGTACAGATGCATTTTTCAAGAAAAAAAAATCAACACGTGAGATCAGATTCCAACCAGAATTTTCAATTCAAACAACCAGCAATTCAATTATGACACTCGTCTTCTTCCAGGAGAGACTCTGAAGTTGTTGGCACAGAGTGTTCCTCGATTTCTTCTATATGTTCAGCTTTCTCGATCGCAGCTGATGGAATCCCATTTAGCTCGGATACCACGAGCTTCTCGTTGCGCTCAACATTTGGCGCTTCCAAATCTTGCCTTCGATTTGGGTGGAAGAATTTGTAGTAGATCAGCATGATGAAGATTCCTAAAACTGAAAATTAGTATTTTTGTGTTTATTGAAAACTTACCAATAAAAAATGTAGCTGGAACACCGATTCGGATTTTTTCGATAAGAGGGAATGCATCGAGCGGTGTGGGTAGGAGTAAAAAGATGATCTGGAAGCGTTTCAAGTTTTCTGTACAATCCAGATAACTAAACTCACCATCATTTCTATGAATTCAACAGTATATGCCACTAAATACCGATATCTTGTGTTTCCTTCAGCCATGTTGAACGGTGTGAAGAGGTGAATCATAGCGTTGATGAGCAAAAGAAGCTTCTCGATGTGTGTGCATGCTTCAATGTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTTAGTAAATTTTCTACCTGTAAGAAGATAACGTGTACCAGAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACAACAGCACGAACGCTACCAGTGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTTTG</canonical>
            <polymorphic>GTCTAGTAGAAATCACAAGTGGCTCTGATTGACACTTTACCACATTTTAGAAAATATTTCTTTAAAGAATATTGTTTTGAATGTTCGCAATCATTCTGCCATTGAACACCAGAAAAAGATTTCAGGATATTCAAAAAATGTTATTCCATATGTACAGATGCATTTTTCAAGAAAAAAAAATCAACACGTGAGATCAGATTCCAACCAGAATTTTCAATTCAAACAACCAGCAATTCAATTATGACACTCGTCTTCTTCCAGGAGAGACTCTGAAGTTGTTGGCACAGAGTGTTCCTCGATTTCTTCTATATGTTCAGCTTTCTCGATCGCAGCTGATGGAATCCCATTTAGCTCGGATACCACGAGCTTCTCGTTGCGCTCAACATTTGGCGCTTCCAAATCTTGCCTTCGATTTGGGTGGAAGAATTTGTAGTAGATCAGCATGATGAAGATTCCTAAAACTGAAAATTAGTATTTTTGTGTTTATTGAAAACTTACCRATAAAAAATGTAGCTGGAACACCGATTCGGATTTTTTCGATAAGAGGGAATGCATCGAGCGGTGTGGGTAGGAGTAAAAAGATGATCTGGAAGCGTTTCAAGTTTTCTGTACAATCCAGATAACTAAACTCACCATCATTTCTATGAATTCAACAGTATATGCCACTAAATACCGATATCTTGTGTTTCCTTCAGCCATGTTGAACGGTGTGAAGAGGTGAATCATAGCGTTGATGAGCAAAAGAAGCTTCTCGATGTGTGTGCATGCTTCAATGTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTTAGTAAATTTTCTACCTGTAAGAAGATAACGTGTACCAGAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACAACAGCACGAACGCTACCAGTGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGATGAAGATTCCTAAAACTG</pcr_primer_p1>
		<pcr_primer_p2>AGATATCGGTATTTAGTGGCATA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CATGATGAAGATTCCTAAAACTGAAAATTAGTATTTTTGTGTTTATTGAAAACTTACCAATAAAAAATGTAGCTGGAACACCGATTCGGATTTTTTCGATAAGAGGGAATGCATCGAGCGGTGTGGGTAGGAGTAAAAAGATGATCTGGAAGCGTTTCAAGTTTTCTGTACAATCCAGATAACTAAACTCACCATCATTTCTATGAATTCAACAGTATATGCCACTAAATACCGATATCT</canonical_amplicon>
		<polymorphic_amplicon>CATGATGAAGATTCCTAAAACTGAAAATTAGTATTTTTGTGTTTATTGAAAACTTACCRATAAAAAATGTAGCTGGAACACCGATTCGGATTTTTTCGATAAGAGGGAATGCATCGAGCGGTGTGGGTAGGAGTAAAAAGATGATCTGGAAGCGTTTCAAGTTTTCTGTACAATCCAGATAACTAAACTCACCATCATTTCTATGAATTCAACAGTATATGCCACTAAATACCGATATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5974</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>255823</contig_pos>
        <strand>+</strand>
        <context>TAAAAAATGT[A/G]GCTGGAACAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGAAAATTAGTATTTTTGTGTTTATTGAAAACTTACCAATAAAAAATGT</left_flank>
        <right_flank>GCTGGAACACCGATTCGGATTTTTTCGATAAGAGGGAATGCATCGAGCGG</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACAAGTGGCTCTGATTGACACTTTACCACATTTTAGAAAATATTTCTTTAAAGAATATTGTTTTGAATGTTCGCAATCATTCTGCCATTGAACACCAGAAAAAGATTTCAGGATATTCAAAAAATGTTATTCCATATGTACAGATGCATTTTTCAAGAAAAAAAAATCAACACGTGAGATCAGATTCCAACCAGAATTTTCAATTCAAACAACCAGCAATTCAATTATGACACTCGTCTTCTTCCAGGAGAGACTCTGAAGTTGTTGGCACAGAGTGTTCCTCGATTTCTTCTATATGTTCAGCTTTCTCGATCGCAGCTGATGGAATCCCATTTAGCTCGGATACCACGAGCTTCTCGTTGCGCTCAACATTTGGCGCTTCCAAATCTTGCCTTCGATTTGGGTGGAAGAATTTGTAGTAGATCAGCATGATGAAGATTCCTAAAACTGAAAATTAGTATTTTTGTGTTTATTGAAAACTTACCAATAAAAAATGTAGCTGGAACACCGATTCGGATTTTTTCGATAAGAGGGAATGCATCGAGCGGTGTGGGTAGGAGTAAAAAGATGATCTGGAAGCGTTTCAAGTTTTCTGTACAATCCAGATAACTAAACTCACCATCATTTCTATGAATTCAACAGTATATGCCACTAAATACCGATATCTTGTGTTTCCTTCAGCCATGTTGAACGGTGTGAAGAGGTGAATCATAGCGTTGATGAGCAAAAGAAGCTTCTCGATGTGTGTGCATGCTTCAATGTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTTAGTAAATTTTCTACCTGTAAGAAGATAACGTGTACCAGAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACAACAGCACGAACGCTACCAGTGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTTTGTCCTTCTCTCCC</canonical>
            <polymorphic>TCACAAGTGGCTCTGATTGACACTTTACCACATTTTAGAAAATATTTCTTTAAAGAATATTGTTTTGAATGTTCGCAATCATTCTGCCATTGAACACCAGAAAAAGATTTCAGGATATTCAAAAAATGTTATTCCATATGTACAGATGCATTTTTCAAGAAAAAAAAATCAACACGTGAGATCAGATTCCAACCAGAATTTTCAATTCAAACAACCAGCAATTCAATTATGACACTCGTCTTCTTCCAGGAGAGACTCTGAAGTTGTTGGCACAGAGTGTTCCTCGATTTCTTCTATATGTTCAGCTTTCTCGATCGCAGCTGATGGAATCCCATTTAGCTCGGATACCACGAGCTTCTCGTTGCGCTCAACATTTGGCGCTTCCAAATCTTGCCTTCGATTTGGGTGGAAGAATTTGTAGTAGATCAGCATGATGAAGATTCCTAAAACTGAAAATTAGTATTTTTGTGTTTATTGAAAACTTACCAATAAAAAATGTRGCTGGAACACCGATTCGGATTTTTTCGATAAGAGGGAATGCATCGAGCGGTGTGGGTAGGAGTAAAAAGATGATCTGGAAGCGTTTCAAGTTTTCTGTACAATCCAGATAACTAAACTCACCATCATTTCTATGAATTCAACAGTATATGCCACTAAATACCGATATCTTGTGTTTCCTTCAGCCATGTTGAACGGTGTGAAGAGGTGAATCATAGCGTTGATGAGCAAAAGAAGCTTCTCGATGTGTGTGCATGCTTCAATGTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTTAGTAAATTTTCTACCTGTAAGAAGATAACGTGTACCAGAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACAACAGCACGAACGCTACCAGTGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTTTGTCCTTCTCTCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>305 265 234 147 19 15 15</canonical_bands>
                <polymorphic_bands>381 305 265 19 15 15</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>295 230 182 147 52 35 19 15 15 10</canonical_bands>
                <polymorphic_bands>329 295 230 52 35 19 15 15 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGATGAAGATTCCTAAAACTG</pcr_primer_p1>
		<pcr_primer_p2>AGATATCGGTATTTAGTGGCATA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CATGATGAAGATTCCTAAAACTGAAAATTAGTATTTTTGTGTTTATTGAAAACTTACCAATAAAAAATGTAGCTGGAACACCGATTCGGATTTTTTCGATAAGAGGGAATGCATCGAGCGGTGTGGGTAGGAGTAAAAAGATGATCTGGAAGCGTTTCAAGTTTTCTGTACAATCCAGATAACTAAACTCACCATCATTTCTATGAATTCAACAGTATATGCCACTAAATACCGATATCT</canonical_amplicon>
		<polymorphic_amplicon>CATGATGAAGATTCCTAAAACTGAAAATTAGTATTTTTGTGTTTATTGAAAACTTACCAATAAAAAATGTRGCTGGAACACCGATTCGGATTTTTTCGATAAGAGGGAATGCATCGAGCGGTGTGGGTAGGAGTAAAAAGATGATCTGGAAGCGTTTCAAGTTTTCTGTACAATCCAGATAACTAAACTCACCATCATTTCTATGAATTCAACAGTATATGCCACTAAATACCGATATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5975</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>255871</contig_pos>
        <strand>+</strand>
        <context>ATGCATCGAG[C/T]GGTGTGGGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTAGCTGGAACACCGATTCGGATTTTTTCGATAAGAGGGAATGCATCGAG</left_flank>
        <right_flank>GGTGTGGGTAGGAGTAAAAAGATGATCTGGAAGCGTTTCAAGTTTTCTGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAAAGAATATTGTTTTGAATGTTCGCAATCATTCTGCCATTGAACACCAGAAAAAGATTTCAGGATATTCAAAAAATGTTATTCCATATGTACAGATGCATTTTTCAAGAAAAAAAAATCAACACGTGAGATCAGATTCCAACCAGAATTTTCAATTCAAACAACCAGCAATTCAATTATGACACTCGTCTTCTTCCAGGAGAGACTCTGAAGTTGTTGGCACAGAGTGTTCCTCGATTTCTTCTATATGTTCAGCTTTCTCGATCGCAGCTGATGGAATCCCATTTAGCTCGGATACCACGAGCTTCTCGTTGCGCTCAACATTTGGCGCTTCCAAATCTTGCCTTCGATTTGGGTGGAAGAATTTGTAGTAGATCAGCATGATGAAGATTCCTAAAACTGAAAATTAGTATTTTTGTGTTTATTGAAAACTTACCAATAAAAAATGTAGCTGGAACACCGATTCGGATTTTTTCGATAAGAGGGAATGCATCGAGCGGTGTGGGTAGGAGTAAAAAGATGATCTGGAAGCGTTTCAAGTTTTCTGTACAATCCAGATAACTAAACTCACCATCATTTCTATGAATTCAACAGTATATGCCACTAAATACCGATATCTTGTGTTTCCTTCAGCCATGTTGAACGGTGTGAAGAGGTGAATCATAGCGTTGATGAGCAAAAGAAGCTTCTCGATGTGTGTGCATGCTTCAATGTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTTAGTAAATTTTCTACCTGTAAGAAGATAACGTGTACCAGAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACAACAGCACGAACGCTACCAGTGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTTTGTCCTTCTCTCCCAATTGTATACTTTTATCGCTTTTGCAATCTCTCACCTGCAGTACTGCT</canonical>
            <polymorphic>TTTAAAGAATATTGTTTTGAATGTTCGCAATCATTCTGCCATTGAACACCAGAAAAAGATTTCAGGATATTCAAAAAATGTTATTCCATATGTACAGATGCATTTTTCAAGAAAAAAAAATCAACACGTGAGATCAGATTCCAACCAGAATTTTCAATTCAAACAACCAGCAATTCAATTATGACACTCGTCTTCTTCCAGGAGAGACTCTGAAGTTGTTGGCACAGAGTGTTCCTCGATTTCTTCTATATGTTCAGCTTTCTCGATCGCAGCTGATGGAATCCCATTTAGCTCGGATACCACGAGCTTCTCGTTGCGCTCAACATTTGGCGCTTCCAAATCTTGCCTTCGATTTGGGTGGAAGAATTTGTAGTAGATCAGCATGATGAAGATTCCTAAAACTGAAAATTAGTATTTTTGTGTTTATTGAAAACTTACCAATAAAAAATGTAGCTGGAACACCGATTCGGATTTTTTCGATAAGAGGGAATGCATCGAGYGGTGTGGGTAGGAGTAAAAAGATGATCTGGAAGCGTTTCAAGTTTTCTGTACAATCCAGATAACTAAACTCACCATCATTTCTATGAATTCAACAGTATATGCCACTAAATACCGATATCTTGTGTTTCCTTCAGCCATGTTGAACGGTGTGAAGAGGTGAATCATAGCGTTGATGAGCAAAAGAAGCTTCTCGATGTGTGTGCATGCTTCAATGTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTTAGTAAATTTTCTACCTGTAAGAAGATAACGTGTACCAGAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACAACAGCACGAACGCTACCAGTGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTTTGTCCTTCTCTCCCAATTGTATACTTTTATCGCTTTTGCAATCTCTCACCTGCAGTACTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGATGAAGATTCCTAAAACTG</pcr_primer_p1>
		<pcr_primer_p2>AGATATCGGTATTTAGTGGCATA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CATGATGAAGATTCCTAAAACTGAAAATTAGTATTTTTGTGTTTATTGAAAACTTACCAATAAAAAATGTAGCTGGAACACCGATTCGGATTTTTTCGATAAGAGGGAATGCATCGAGCGGTGTGGGTAGGAGTAAAAAGATGATCTGGAAGCGTTTCAAGTTTTCTGTACAATCCAGATAACTAAACTCACCATCATTTCTATGAATTCAACAGTATATGCCACTAAATACCGATATCT</canonical_amplicon>
		<polymorphic_amplicon>CATGATGAAGATTCCTAAAACTGAAAATTAGTATTTTTGTGTTTATTGAAAACTTACCAATAAAAAATGTAGCTGGAACACCGATTCGGATTTTTTCGATAAGAGGGAATGCATCGAGYGGTGTGGGTAGGAGTAAAAAGATGATCTGGAAGCGTTTCAAGTTTTCTGTACAATCCAGATAACTAAACTCACCATCATTTCTATGAATTCAACAGTATATGCCACTAAATACCGATATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5976</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>255956</contig_pos>
        <strand>+</strand>
        <context>ATCATTTCTA[A/T]GAATTCAACA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTTCAAGTTTTCTGTACAATCCAGATAACTAAACTCACCATCATTTCTA</left_flank>
        <right_flank>GAATTCAACAGTATATGCCACTAAATACCGATATCTTGTGTTTCCTTCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCATATGTACAGATGCATTTTTCAAGAAAAAAAAATCAACACGTGAGATCAGATTCCAACCAGAATTTTCAATTCAAACAACCAGCAATTCAATTATGACACTCGTCTTCTTCCAGGAGAGACTCTGAAGTTGTTGGCACAGAGTGTTCCTCGATTTCTTCTATATGTTCAGCTTTCTCGATCGCAGCTGATGGAATCCCATTTAGCTCGGATACCACGAGCTTCTCGTTGCGCTCAACATTTGGCGCTTCCAAATCTTGCCTTCGATTTGGGTGGAAGAATTTGTAGTAGATCAGCATGATGAAGATTCCTAAAACTGAAAATTAGTATTTTTGTGTTTATTGAAAACTTACCAATAAAAAATGTAGCTGGAACACCGATTCGGATTTTTTCGATAAGAGGGAATGCATCGAGCGGTGTGGGTAGGAGTAAAAAGATGATCTGGAAGCGTTTCAAGTTTTCTGTACAATCCAGATAACTAAACTCACCATCATTTCTATGAATTCAACAGTATATGCCACTAAATACCGATATCTTGTGTTTCCTTCAGCCATGTTGAACGGTGTGAAGAGGTGAATCATAGCGTTGATGAGCAAAAGAAGCTTCTCGATGTGTGTGCATGCTTCAATGTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTTAGTAAATTTTCTACCTGTAAGAAGATAACGTGTACCAGAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACAACAGCACGAACGCTACCAGTGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTTTGTCCTTCTCTCCCAATTGTATACTTTTATCGCTTTTGCAATCTCTCACCTGCAGTACTGCTTCGTGTGGCCAAATATTGACTTTGTCATCTCTGGTCATTCGTAACGAACGGTTTTGAACGACAACGGACCAGGAAATACTAATAA</canonical>
            <polymorphic>CCATATGTACAGATGCATTTTTCAAGAAAAAAAAATCAACACGTGAGATCAGATTCCAACCAGAATTTTCAATTCAAACAACCAGCAATTCAATTATGACACTCGTCTTCTTCCAGGAGAGACTCTGAAGTTGTTGGCACAGAGTGTTCCTCGATTTCTTCTATATGTTCAGCTTTCTCGATCGCAGCTGATGGAATCCCATTTAGCTCGGATACCACGAGCTTCTCGTTGCGCTCAACATTTGGCGCTTCCAAATCTTGCCTTCGATTTGGGTGGAAGAATTTGTAGTAGATCAGCATGATGAAGATTCCTAAAACTGAAAATTAGTATTTTTGTGTTTATTGAAAACTTACCAATAAAAAATGTAGCTGGAACACCGATTCGGATTTTTTCGATAAGAGGGAATGCATCGAGCGGTGTGGGTAGGAGTAAAAAGATGATCTGGAAGCGTTTCAAGTTTTCTGTACAATCCAGATAACTAAACTCACCATCATTTCTAWGAATTCAACAGTATATGCCACTAAATACCGATATCTTGTGTTTCCTTCAGCCATGTTGAACGGTGTGAAGAGGTGAATCATAGCGTTGATGAGCAAAAGAAGCTTCTCGATGTGTGTGCATGCTTCAATGTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTTAGTAAATTTTCTACCTGTAAGAAGATAACGTGTACCAGAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACAACAGCACGAACGCTACCAGTGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTTTGTCCTTCTCTCCCAATTGTATACTTTTATCGCTTTTGCAATCTCTCACCTGCAGTACTGCTTCGTGTGGCCAAATATTGACTTTGTCATCTCTGGTCATTCGTAACGAACGGTTTTGAACGACAACGGACCAGGAAATACTAATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGGGTAGGAGTAAAAAGATGAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGCGTTGAAAACTAATACAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGGGTAGGAGTAAAAAGATGATCTGGAAGCGTTTCAAGTTTTCTGTACAATCCAGATAACTAAACTCACCATCATTTCTATGAATTCAACAGTATATGCCACTAAATACCGATATCTTGTGTTTCCTTCAGCCATGTTGAACGGTGTGAAGAGGTGAATCATAGCGTTGATGAGCAAAAGAAGCTTCTCGATGTGTGTGCATGCTTCAATGTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTT</canonical_amplicon>
		<polymorphic_amplicon>GTGGGTAGGAGTAAAAAGATGATCTGGAAGCGTTTCAAGTTTTCTGTACAATCCAGATAACTAAACTCACCATCATTTCTAWGAATTCAACAGTATATGCCACTAAATACCGATATCTTGTGTTTCCTTCAGCCATGTTGAACGGTGTGAAGAGGTGAATCATAGCGTTGATGAGCAAAAGAAGCTTCTCGATGTGTGTGCATGCTTCAATGTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5977</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>256077</contig_pos>
        <strand>+</strand>
        <context>TGTGTGTGCA[C/T]GCTTCAATGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGTGAATCATAGCGTTGATGAGCAAAAGAAGCTTCTCGATGTGTGTGCA</left_flank>
        <right_flank>GCTTCAATGTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTTAGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCTGAAGTTGTTGGCACAGAGTGTTCCTCGATTTCTTCTATATGTTCAGCTTTCTCGATCGCAGCTGATGGAATCCCATTTAGCTCGGATACCACGAGCTTCTCGTTGCGCTCAACATTTGGCGCTTCCAAATCTTGCCTTCGATTTGGGTGGAAGAATTTGTAGTAGATCAGCATGATGAAGATTCCTAAAACTGAAAATTAGTATTTTTGTGTTTATTGAAAACTTACCAATAAAAAATGTAGCTGGAACACCGATTCGGATTTTTTCGATAAGAGGGAATGCATCGAGCGGTGTGGGTAGGAGTAAAAAGATGATCTGGAAGCGTTTCAAGTTTTCTGTACAATCCAGATAACTAAACTCACCATCATTTCTATGAATTCAACAGTATATGCCACTAAATACCGATATCTTGTGTTTCCTTCAGCCATGTTGAACGGTGTGAAGAGGTGAATCATAGCGTTGATGAGCAAAAGAAGCTTCTCGATGTGTGTGCATGCTTCAATGTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTTAGTAAATTTTCTACCTGTAAGAAGATAACGTGTACCAGAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACAACAGCACGAACGCTACCAGTGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTTTGTCCTTCTCTCCCAATTGTATACTTTTATCGCTTTTGCAATCTCTCACCTGCAGTACTGCTTCGTGTGGCCAAATATTGACTTTGTCATCTCTGGTCATTCGTAACGAACGGTTTTGAACGACAACGGACCAGGAAATACTAATAATTGATAGTGTGAGAGAGGCAGCTTGAAAATAGAGCCAGTATGGGTACTTTCCAGAGATATAGTAGTTCTGGAAGTAGTTAGCAGCAATGGATCCTTGAATGATGAGCTGAGGTGCAGATTC</canonical>
            <polymorphic>ACTCTGAAGTTGTTGGCACAGAGTGTTCCTCGATTTCTTCTATATGTTCAGCTTTCTCGATCGCAGCTGATGGAATCCCATTTAGCTCGGATACCACGAGCTTCTCGTTGCGCTCAACATTTGGCGCTTCCAAATCTTGCCTTCGATTTGGGTGGAAGAATTTGTAGTAGATCAGCATGATGAAGATTCCTAAAACTGAAAATTAGTATTTTTGTGTTTATTGAAAACTTACCAATAAAAAATGTAGCTGGAACACCGATTCGGATTTTTTCGATAAGAGGGAATGCATCGAGCGGTGTGGGTAGGAGTAAAAAGATGATCTGGAAGCGTTTCAAGTTTTCTGTACAATCCAGATAACTAAACTCACCATCATTTCTATGAATTCAACAGTATATGCCACTAAATACCGATATCTTGTGTTTCCTTCAGCCATGTTGAACGGTGTGAAGAGGTGAATCATAGCGTTGATGAGCAAAAGAAGCTTCTCGATGTGTGTGCAYGCTTCAATGTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTTAGTAAATTTTCTACCTGTAAGAAGATAACGTGTACCAGAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACAACAGCACGAACGCTACCAGTGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTTTGTCCTTCTCTCCCAATTGTATACTTTTATCGCTTTTGCAATCTCTCACCTGCAGTACTGCTTCGTGTGGCCAAATATTGACTTTGTCATCTCTGGTCATTCGTAACGAACGGTTTTGAACGACAACGGACCAGGAAATACTAATAATTGATAGTGTGAGAGAGGCAGCTTGAAAATAGAGCCAGTATGGGTACTTTCCAGAGATATAGTAGTTCTGGAAGTAGTTAGCAGCAATGGATCCTTGAATGATGAGCTGAGGTGCAGATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCATGC</site>
                <isoschizomers>
                    <enzyme>BbuI</enzyme>
                    <enzyme>PaeI</enzyme>
                    <enzyme>SpaHI</enzyme>
                    <enzyme>SphI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 255 176 67</canonical_bands>
                <polymorphic_bands>569 255 176</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATCCAGATAACTAAACTCACC</pcr_primer_p1>
		<pcr_primer_p2>GTCACTCTGGTACACGTTATCTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAATCCAGATAACTAAACTCACCATCATTTCTATGAATTCAACAGTATATGCCACTAAATACCGATATCTTGTGTTTCCTTCAGCCATGTTGAACGGTGTGAAGAGGTGAATCATAGCGTTGATGAGCAAAAGAAGCTTCTCGATGTGTGTGCATGCTTCAATGTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTTAGTAAATTTTCTACCTGTAAGAAGATAACGTGTACCAGAGTGAC</canonical_amplicon>
		<polymorphic_amplicon>CAATCCAGATAACTAAACTCACCATCATTTCTATGAATTCAACAGTATATGCCACTAAATACCGATATCTTGTGTTTCCTTCAGCCATGTTGAACGGTGTGAAGAGGTGAATCATAGCGTTGATGAGCAAAAGAAGCTTCTCGATGTGTGTGCAYGCTTCAATGTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTTAGTAAATTTTCTACCTGTAAGAAGATAACGTGTACCAGAGTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5978</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>256132</contig_pos>
        <strand>+</strand>
        <context>TTTAGTAAAT[C/T]TTCTACCTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATGTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTTAGTAAAT</left_flank>
        <right_flank>TTCTACCTGTAAGAAGATAACGTGTACCAGAGTGACTATCAAGTGTCCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCGATCGCAGCTGATGGAATCCCATTTAGCTCGGATACCACGAGCTTCTCGTTGCGCTCAACATTTGGCGCTTCCAAATCTTGCCTTCGATTTGGGTGGAAGAATTTGTAGTAGATCAGCATGATGAAGATTCCTAAAACTGAAAATTAGTATTTTTGTGTTTATTGAAAACTTACCAATAAAAAATGTAGCTGGAACACCGATTCGGATTTTTTCGATAAGAGGGAATGCATCGAGCGGTGTGGGTAGGAGTAAAAAGATGATCTGGAAGCGTTTCAAGTTTTCTGTACAATCCAGATAACTAAACTCACCATCATTTCTATGAATTCAACAGTATATGCCACTAAATACCGATATCTTGTGTTTCCTTCAGCCATGTTGAACGGTGTGAAGAGGTGAATCATAGCGTTGATGAGCAAAAGAAGCTTCTCGATGTGTGTGCATGCTTCAATGTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTTAGTAAATTTTCTACCTGTAAGAAGATAACGTGTACCAGAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACAACAGCACGAACGCTACCAGTGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTTTGTCCTTCTCTCCCAATTGTATACTTTTATCGCTTTTGCAATCTCTCACCTGCAGTACTGCTTCGTGTGGCCAAATATTGACTTTGTCATCTCTGGTCATTCGTAACGAACGGTTTTGAACGACAACGGACCAGGAAATACTAATAATTGATAGTGTGAGAGAGGCAGCTTGAAAATAGAGCCAGTATGGGTACTTTCCAGAGATATAGTAGTTCTGGAAGTAGTTAGCAGCAATGGATCCTTGAATGATGAGCTGAGGTGCAGATTCGAGGAAGGCTTCGAAGAACCTAAAATGAAAATTTGATTTTTGAAATGTTATTCTG</canonical>
            <polymorphic>CTCGATCGCAGCTGATGGAATCCCATTTAGCTCGGATACCACGAGCTTCTCGTTGCGCTCAACATTTGGCGCTTCCAAATCTTGCCTTCGATTTGGGTGGAAGAATTTGTAGTAGATCAGCATGATGAAGATTCCTAAAACTGAAAATTAGTATTTTTGTGTTTATTGAAAACTTACCAATAAAAAATGTAGCTGGAACACCGATTCGGATTTTTTCGATAAGAGGGAATGCATCGAGCGGTGTGGGTAGGAGTAAAAAGATGATCTGGAAGCGTTTCAAGTTTTCTGTACAATCCAGATAACTAAACTCACCATCATTTCTATGAATTCAACAGTATATGCCACTAAATACCGATATCTTGTGTTTCCTTCAGCCATGTTGAACGGTGTGAAGAGGTGAATCATAGCGTTGATGAGCAAAAGAAGCTTCTCGATGTGTGTGCATGCTTCAATGTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTTAGTAAATYTTCTACCTGTAAGAAGATAACGTGTACCAGAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACAACAGCACGAACGCTACCAGTGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTTTGTCCTTCTCTCCCAATTGTATACTTTTATCGCTTTTGCAATCTCTCACCTGCAGTACTGCTTCGTGTGGCCAAATATTGACTTTGTCATCTCTGGTCATTCGTAACGAACGGTTTTGAACGACAACGGACCAGGAAATACTAATAATTGATAGTGTGAGAGAGGCAGCTTGAAAATAGAGCCAGTATGGGTACTTTCCAGAGATATAGTAGTTCTGGAAGTAGTTAGCAGCAATGGATCCTTGAATGATGAGCTGAGGTGCAGATTCGAGGAAGGCTTCGAAGAACCTAAAATGAAAATTTGATTTTTGAAATGTTATTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>478 222 171 103 26</canonical_bands>
                <polymorphic_bands>649 222 103 26</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>180 154 152 142 131 103 42 41 29 26</canonical_bands>
                <polymorphic_bands>183 180 152 142 131 103 42 41 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTCAACAGTATATGCCACTAAA</pcr_primer_p1>
		<pcr_primer_p2>CGGAATCTATGTAGTTTTTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATTCAACAGTATATGCCACTAAATACCGATATCTTGTGTTTCCTTCAGCCATGTTGAACGGTGTGAAGAGGTGAATCATAGCGTTGATGAGCAAAAGAAGCTTCTCGATGTGTGTGCATGCTTCAATGTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTTAGTAAATTTTCTACCTGTAAGAAGATAACGTGTACCAGAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCG</canonical_amplicon>
		<polymorphic_amplicon>AATTCAACAGTATATGCCACTAAATACCGATATCTTGTGTTTCCTTCAGCCATGTTGAACGGTGTGAAGAGGTGAATCATAGCGTTGATGAGCAAAAGAAGCTTCTCGATGTGTGTGCATGCTTCAATGTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTTAGTAAATYTTCTACCTGTAAGAAGATAACGTGTACCAGAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5979</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>256213</contig_pos>
        <strand>+</strand>
        <context>ATTCCGAACA[A/T]CAGCACGAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACA</left_flank>
        <right_flank>CAGCACGAACGCTACCAGTGTGATGATTCTCGCCAAGATCGTGAGGAATC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCCTTCGATTTGGGTGGAAGAATTTGTAGTAGATCAGCATGATGAAGATTCCTAAAACTGAAAATTAGTATTTTTGTGTTTATTGAAAACTTACCAATAAAAAATGTAGCTGGAACACCGATTCGGATTTTTTCGATAAGAGGGAATGCATCGAGCGGTGTGGGTAGGAGTAAAAAGATGATCTGGAAGCGTTTCAAGTTTTCTGTACAATCCAGATAACTAAACTCACCATCATTTCTATGAATTCAACAGTATATGCCACTAAATACCGATATCTTGTGTTTCCTTCAGCCATGTTGAACGGTGTGAAGAGGTGAATCATAGCGTTGATGAGCAAAAGAAGCTTCTCGATGTGTGTGCATGCTTCAATGTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTTAGTAAATTTTCTACCTGTAAGAAGATAACGTGTACCAGAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACAACAGCACGAACGCTACCAGTGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTTTGTCCTTCTCTCCCAATTGTATACTTTTATCGCTTTTGCAATCTCTCACCTGCAGTACTGCTTCGTGTGGCCAAATATTGACTTTGTCATCTCTGGTCATTCGTAACGAACGGTTTTGAACGACAACGGACCAGGAAATACTAATAATTGATAGTGTGAGAGAGGCAGCTTGAAAATAGAGCCAGTATGGGTACTTTCCAGAGATATAGTAGTTCTGGAAGTAGTTAGCAGCAATGGATCCTTGAATGATGAGCTGAGGTGCAGATTCGAGGAAGGCTTCGAAGAACCTAAAATGAAAATTTGATTTTTGAAATGTTATTCTGCAATAGCTACCTCAAAAGTGTTGCATCTCGTTCTGCTTCCACCATTTTCATGAAAAATTTTCGTTTTTCTTTGTCTGTATC</canonical>
            <polymorphic>TTGCCTTCGATTTGGGTGGAAGAATTTGTAGTAGATCAGCATGATGAAGATTCCTAAAACTGAAAATTAGTATTTTTGTGTTTATTGAAAACTTACCAATAAAAAATGTAGCTGGAACACCGATTCGGATTTTTTCGATAAGAGGGAATGCATCGAGCGGTGTGGGTAGGAGTAAAAAGATGATCTGGAAGCGTTTCAAGTTTTCTGTACAATCCAGATAACTAAACTCACCATCATTTCTATGAATTCAACAGTATATGCCACTAAATACCGATATCTTGTGTTTCCTTCAGCCATGTTGAACGGTGTGAAGAGGTGAATCATAGCGTTGATGAGCAAAAGAAGCTTCTCGATGTGTGTGCATGCTTCAATGTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTTAGTAAATTTTCTACCTGTAAGAAGATAACGTGTACCAGAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACAWCAGCACGAACGCTACCAGTGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTTTGTCCTTCTCTCCCAATTGTATACTTTTATCGCTTTTGCAATCTCTCACCTGCAGTACTGCTTCGTGTGGCCAAATATTGACTTTGTCATCTCTGGTCATTCGTAACGAACGGTTTTGAACGACAACGGACCAGGAAATACTAATAATTGATAGTGTGAGAGAGGCAGCTTGAAAATAGAGCCAGTATGGGTACTTTCCAGAGATATAGTAGTTCTGGAAGTAGTTAGCAGCAATGGATCCTTGAATGATGAGCTGAGGTGCAGATTCGAGGAAGGCTTCGAAGAACCTAAAATGAAAATTTGATTTTTGAAATGTTATTCTGCAATAGCTACCTCAAAAGTGTTGCATCTCGTTCTGCTTCCACCATTTTCATGAAAAATTTTCGTTTTTCTTTGTCTGTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGAGAGCCTAAAAATTGTATT</pcr_primer_p1>
		<pcr_primer_p2>GTATACAATTGGGAGAGAAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTTAGTAAATTTTCTACCTGTAAGAAGATAACGTGTACCAGAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACAACAGCACGAACGCTACCAGTGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTTTGTCCTTCTCTCCCAATTGTATAC</canonical_amplicon>
		<polymorphic_amplicon>GTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTTAGTAAATTTTCTACCTGTAAGAAGATAACGTGTACCAGAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACAWCAGCACGAACGCTACCAGTGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTTTGTCCTTCTCTCCCAATTGTATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5980</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>256231</contig_pos>
        <strand>+</strand>
        <context>AACGCTACCA[A/G]TGTGATGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGATCAGAAAAACTACATAGATTCCGAACAACAGCACGAACGCTACCA</left_flank>
        <right_flank>TGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGAATTTGTAGTAGATCAGCATGATGAAGATTCCTAAAACTGAAAATTAGTATTTTTGTGTTTATTGAAAACTTACCAATAAAAAATGTAGCTGGAACACCGATTCGGATTTTTTCGATAAGAGGGAATGCATCGAGCGGTGTGGGTAGGAGTAAAAAGATGATCTGGAAGCGTTTCAAGTTTTCTGTACAATCCAGATAACTAAACTCACCATCATTTCTATGAATTCAACAGTATATGCCACTAAATACCGATATCTTGTGTTTCCTTCAGCCATGTTGAACGGTGTGAAGAGGTGAATCATAGCGTTGATGAGCAAAAGAAGCTTCTCGATGTGTGTGCATGCTTCAATGTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTTAGTAAATTTTCTACCTGTAAGAAGATAACGTGTACCAGAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACAACAGCACGAACGCTACCAGTGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTTTGTCCTTCTCTCCCAATTGTATACTTTTATCGCTTTTGCAATCTCTCACCTGCAGTACTGCTTCGTGTGGCCAAATATTGACTTTGTCATCTCTGGTCATTCGTAACGAACGGTTTTGAACGACAACGGACCAGGAAATACTAATAATTGATAGTGTGAGAGAGGCAGCTTGAAAATAGAGCCAGTATGGGTACTTTCCAGAGATATAGTAGTTCTGGAAGTAGTTAGCAGCAATGGATCCTTGAATGATGAGCTGAGGTGCAGATTCGAGGAAGGCTTCGAAGAACCTAAAATGAAAATTTGATTTTTGAAATGTTATTCTGCAATAGCTACCTCAAAAGTGTTGCATCTCGTTCTGCTTCCACCATTTTCATGAAAAATTTTCGTTTTTCTTTGTCTGTATCATCCTTTTTGTTTTTTGT</canonical>
            <polymorphic>GAAGAATTTGTAGTAGATCAGCATGATGAAGATTCCTAAAACTGAAAATTAGTATTTTTGTGTTTATTGAAAACTTACCAATAAAAAATGTAGCTGGAACACCGATTCGGATTTTTTCGATAAGAGGGAATGCATCGAGCGGTGTGGGTAGGAGTAAAAAGATGATCTGGAAGCGTTTCAAGTTTTCTGTACAATCCAGATAACTAAACTCACCATCATTTCTATGAATTCAACAGTATATGCCACTAAATACCGATATCTTGTGTTTCCTTCAGCCATGTTGAACGGTGTGAAGAGGTGAATCATAGCGTTGATGAGCAAAAGAAGCTTCTCGATGTGTGTGCATGCTTCAATGTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTTAGTAAATTTTCTACCTGTAAGAAGATAACGTGTACCAGAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACAACAGCACGAACGCTACCARTGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTTTGTCCTTCTCTCCCAATTGTATACTTTTATCGCTTTTGCAATCTCTCACCTGCAGTACTGCTTCGTGTGGCCAAATATTGACTTTGTCATCTCTGGTCATTCGTAACGAACGGTTTTGAACGACAACGGACCAGGAAATACTAATAATTGATAGTGTGAGAGAGGCAGCTTGAAAATAGAGCCAGTATGGGTACTTTCCAGAGATATAGTAGTTCTGGAAGTAGTTAGCAGCAATGGATCCTTGAATGATGAGCTGAGGTGCAGATTCGAGGAAGGCTTCGAAGAACCTAAAATGAAAATTTGATTTTTGAAATGTTATTCTGCAATAGCTACCTCAAAAGTGTTGCATCTCGTTCTGCTTCCACCATTTTCATGAAAAATTTTCGTTTTTCTTTGTCTGTATCATCCTTTTTGTTTTTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>103 101 87 82 68 66 62 58 43 41 39 39 33 25 21 21 20 19 15 14 11 10 8 2 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>103 101 87 82 68 66 62 58 43 41 39 39 33 25 21 21 20 19 17 14 11 10 8 2 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGGAGAGCCTAAAAATTGTATT</pcr_primer_p1>
		<pcr_primer_p2>GTATACAATTGGGAGAGAAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTTAGTAAATTTTCTACCTGTAAGAAGATAACGTGTACCAGAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACAACAGCACGAACGCTACCAGTGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTTTGTCCTTCTCTCCCAATTGTATAC</canonical_amplicon>
		<polymorphic_amplicon>GTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTTAGTAAATTTTCTACCTGTAAGAAGATAACGTGTACCAGAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACAACAGCACGAACGCTACCARTGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTTTGTCCTTCTCTCCCAATTGTATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5981</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>256310</contig_pos>
        <strand>+</strand>
        <context>ATAATAACTT[C/T]GTCCTTCTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTT</left_flank>
        <right_flank>GTCCTTCTCTCCCAATTGTATACTTTTATCGCTTTTGCAATCTCTCACCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAAAAAATGTAGCTGGAACACCGATTCGGATTTTTTCGATAAGAGGGAATGCATCGAGCGGTGTGGGTAGGAGTAAAAAGATGATCTGGAAGCGTTTCAAGTTTTCTGTACAATCCAGATAACTAAACTCACCATCATTTCTATGAATTCAACAGTATATGCCACTAAATACCGATATCTTGTGTTTCCTTCAGCCATGTTGAACGGTGTGAAGAGGTGAATCATAGCGTTGATGAGCAAAAGAAGCTTCTCGATGTGTGTGCATGCTTCAATGTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTTAGTAAATTTTCTACCTGTAAGAAGATAACGTGTACCAGAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACAACAGCACGAACGCTACCAGTGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTTTGTCCTTCTCTCCCAATTGTATACTTTTATCGCTTTTGCAATCTCTCACCTGCAGTACTGCTTCGTGTGGCCAAATATTGACTTTGTCATCTCTGGTCATTCGTAACGAACGGTTTTGAACGACAACGGACCAGGAAATACTAATAATTGATAGTGTGAGAGAGGCAGCTTGAAAATAGAGCCAGTATGGGTACTTTCCAGAGATATAGTAGTTCTGGAAGTAGTTAGCAGCAATGGATCCTTGAATGATGAGCTGAGGTGCAGATTCGAGGAAGGCTTCGAAGAACCTAAAATGAAAATTTGATTTTTGAAATGTTATTCTGCAATAGCTACCTCAAAAGTGTTGCATCTCGTTCTGCTTCCACCATTTTCATGAAAAATTTTCGTTTTTCTTTGTCTGTATCATCCTTTTTGTTTTTTGTGAACATCCAACCGTAGTACAAGGCTTTGTAGTACCAAAACAACGGACCCATCTAAATATTTTCATTTAAAAAGACTTTT</canonical>
            <polymorphic>AATAAAAAATGTAGCTGGAACACCGATTCGGATTTTTTCGATAAGAGGGAATGCATCGAGCGGTGTGGGTAGGAGTAAAAAGATGATCTGGAAGCGTTTCAAGTTTTCTGTACAATCCAGATAACTAAACTCACCATCATTTCTATGAATTCAACAGTATATGCCACTAAATACCGATATCTTGTGTTTCCTTCAGCCATGTTGAACGGTGTGAAGAGGTGAATCATAGCGTTGATGAGCAAAAGAAGCTTCTCGATGTGTGTGCATGCTTCAATGTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTTAGTAAATTTTCTACCTGTAAGAAGATAACGTGTACCAGAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACAACAGCACGAACGCTACCAGTGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTTYGTCCTTCTCTCCCAATTGTATACTTTTATCGCTTTTGCAATCTCTCACCTGCAGTACTGCTTCGTGTGGCCAAATATTGACTTTGTCATCTCTGGTCATTCGTAACGAACGGTTTTGAACGACAACGGACCAGGAAATACTAATAATTGATAGTGTGAGAGAGGCAGCTTGAAAATAGAGCCAGTATGGGTACTTTCCAGAGATATAGTAGTTCTGGAAGTAGTTAGCAGCAATGGATCCTTGAATGATGAGCTGAGGTGCAGATTCGAGGAAGGCTTCGAAGAACCTAAAATGAAAATTTGATTTTTGAAATGTTATTCTGCAATAGCTACCTCAAAAGTGTTGCATCTCGTTCTGCTTCCACCATTTTCATGAAAAATTTTCGTTTTTCTTTGTCTGTATCATCCTTTTTGTTTTTTGTGAACATCCAACCGTAGTACAAGGCTTTGTAGTACCAAAACAACGGACCCATCTAAATATTTTCATTTAAAAAGACTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTGACTATCAAGTGTCCAAAG</pcr_primer_p1>
		<pcr_primer_p2>GACCAGAGATGACAAAGTCAATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACAACAGCACGAACGCTACCAGTGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTTTGTCCTTCTCTCCCAATTGTATACTTTTATCGCTTTTGCAATCTCTCACCTGCAGTACTGCTTCGTGTGGCCAAATATTGACTTTGTCATCTCTGGTC</canonical_amplicon>
		<polymorphic_amplicon>GAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACAACAGCACGAACGCTACCAGTGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTTYGTCCTTCTCTCCCAATTGTATACTTTTATCGCTTTTGCAATCTCTCACCTGCAGTACTGCTTCGTGTGGCCAAATATTGACTTTGTCATCTCTGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5982</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>256340</contig_pos>
        <strand>+</strand>
        <context>ATACTTTTAT[C/T]RCTTTTGCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTCGCCCATAATAACTTTGTCCTTCTCTCCCAATTGTATACTTTTAT</left_flank>
        <right_flank>GCTTTTGCAATCTCTCACCTGCAGTACTGCTTCGTGTGGCCAAATATTGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTTTTCGATAAGAGGGAATGCATCGAGCGGTGTGGGTAGGAGTAAAAAGATGATCTGGAAGCGTTTCAAGTTTTCTGTACAATCCAGATAACTAAACTCACCATCATTTCTATGAATTCAACAGTATATGCCACTAAATACCGATATCTTGTGTTTCCTTCAGCCATGTTGAACGGTGTGAAGAGGTGAATCATAGCGTTGATGAGCAAAAGAAGCTTCTCGATGTGTGTGCATGCTTCAATGTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTTAGTAAATTTTCTACCTGTAAGAAGATAACGTGTACCAGAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACAACAGCACGAACGCTACCAGTGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTTTGTCCTTCTCTCCCAATTGTATACTTTTATCGCTTTTGCAATCTCTCACCTGCAGTACTGCTTCGTGTGGCCAAATATTGACTTTGTCATCTCTGGTCATTCGTAACGAACGGTTTTGAACGACAACGGACCAGGAAATACTAATAATTGATAGTGTGAGAGAGGCAGCTTGAAAATAGAGCCAGTATGGGTACTTTCCAGAGATATAGTAGTTCTGGAAGTAGTTAGCAGCAATGGATCCTTGAATGATGAGCTGAGGTGCAGATTCGAGGAAGGCTTCGAAGAACCTAAAATGAAAATTTGATTTTTGAAATGTTATTCTGCAATAGCTACCTCAAAAGTGTTGCATCTCGTTCTGCTTCCACCATTTTCATGAAAAATTTTCGTTTTTCTTTGTCTGTATCATCCTTTTTGTTTTTTGTGAACATCCAACCGTAGTACAAGGCTTTGTAGTACCAAAACAACGGACCCATCTAAATATTTTCATTTAAAAAGACTTTTAAAATAAACTTACTTGAAAAATACATAGAG</canonical>
            <polymorphic>GATTTTTTCGATAAGAGGGAATGCATCGAGCGGTGTGGGTAGGAGTAAAAAGATGATCTGGAAGCGTTTCAAGTTTTCTGTACAATCCAGATAACTAAACTCACCATCATTTCTATGAATTCAACAGTATATGCCACTAAATACCGATATCTTGTGTTTCCTTCAGCCATGTTGAACGGTGTGAAGAGGTGAATCATAGCGTTGATGAGCAAAAGAAGCTTCTCGATGTGTGTGCATGCTTCAATGTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTTAGTAAATTTTCTACCTGTAAGAAGATAACGTGTACCAGAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACAACAGCACGAACGCTACCAGTGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTTTGTCCTTCTCTCCCAATTGTATACTTTTATYGCTTTTGCAATCTCTCACCTGCAGTACTGCTTCGTGTGGCCAAATATTGACTTTGTCATCTCTGGTCATTCGTAACGAACGGTTTTGAACGACAACGGACCAGGAAATACTAATAATTGATAGTGTGAGAGAGGCAGCTTGAAAATAGAGCCAGTATGGGTACTTTCCAGAGATATAGTAGTTCTGGAAGTAGTTAGCAGCAATGGATCCTTGAATGATGAGCTGAGGTGCAGATTCGAGGAAGGCTTCGAAGAACCTAAAATGAAAATTTGATTTTTGAAATGTTATTCTGCAATAGCTACCTCAAAAGTGTTGCATCTCGTTCTGCTTCCACCATTTTCATGAAAAATTTTCGTTTTTCTTTGTCTGTATCATCCTTTTTGTTTTTTGTGAACATCCAACCGTAGTACAAGGCTTTGTAGTACCAAAACAACGGACCCATCTAAATATTTTCATTTAAAAAGACTTTTAAAATAAACTTACTTGAAAAATACATAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTGACTATCAAGTGTCCAAAG</pcr_primer_p1>
		<pcr_primer_p2>GACCAGAGATGACAAAGTCAATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACAACAGCACGAACGCTACCAGTGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTTTGTCCTTCTCTCCCAATTGTATACTTTTATCGCTTTTGCAATCTCTCACCTGCAGTACTGCTTCGTGTGGCCAAATATTGACTTTGTCATCTCTGGTC</canonical_amplicon>
		<polymorphic_amplicon>GAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACAACAGCACGAACGCTACCAGTGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTTTGTCCTTCTCTCCCAATTGTATACTTTTATYGCTTTTGCAATCTCTCACCTGCAGTACTGCTTCGTGTGGCCAAATATTGACTTTGTCATCTCTGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5983</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>256341</contig_pos>
        <strand>+</strand>
        <context>TACTTTTATY[A/G]CTTTTGCAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCGCCCATAATAACTTTGTCCTTCTCTCCCAATTGTATACTTTTATC</left_flank>
        <right_flank>CTTTTGCAATCTCTCACCTGCAGTACTGCTTCGTGTGGCCAAATATTGAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTCGATAAGAGGGAATGCATCGAGCGGTGTGGGTAGGAGTAAAAAGATGATCTGGAAGCGTTTCAAGTTTTCTGTACAATCCAGATAACTAAACTCACCATCATTTCTATGAATTCAACAGTATATGCCACTAAATACCGATATCTTGTGTTTCCTTCAGCCATGTTGAACGGTGTGAAGAGGTGAATCATAGCGTTGATGAGCAAAAGAAGCTTCTCGATGTGTGTGCATGCTTCAATGTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTTAGTAAATTTTCTACCTGTAAGAAGATAACGTGTACCAGAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACAACAGCACGAACGCTACCAGTGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTTTGTCCTTCTCTCCCAATTGTATACTTTTATCGCTTTTGCAATCTCTCACCTGCAGTACTGCTTCGTGTGGCCAAATATTGACTTTGTCATCTCTGGTCATTCGTAACGAACGGTTTTGAACGACAACGGACCAGGAAATACTAATAATTGATAGTGTGAGAGAGGCAGCTTGAAAATAGAGCCAGTATGGGTACTTTCCAGAGATATAGTAGTTCTGGAAGTAGTTAGCAGCAATGGATCCTTGAATGATGAGCTGAGGTGCAGATTCGAGGAAGGCTTCGAAGAACCTAAAATGAAAATTTGATTTTTGAAATGTTATTCTGCAATAGCTACCTCAAAAGTGTTGCATCTCGTTCTGCTTCCACCATTTTCATGAAAAATTTTCGTTTTTCTTTGTCTGTATCATCCTTTTTGTTTTTTGTGAACATCCAACCGTAGTACAAGGCTTTGTAGTACCAAAACAACGGACCCATCTAAATATTTTCATTTAAAAAGACTTTTAAAATAAACTTACTTGAAAAATACATAGAGT</canonical>
            <polymorphic>ATTTTTTCGATAAGAGGGAATGCATCGAGCGGTGTGGGTAGGAGTAAAAAGATGATCTGGAAGCGTTTCAAGTTTTCTGTACAATCCAGATAACTAAACTCACCATCATTTCTATGAATTCAACAGTATATGCCACTAAATACCGATATCTTGTGTTTCCTTCAGCCATGTTGAACGGTGTGAAGAGGTGAATCATAGCGTTGATGAGCAAAAGAAGCTTCTCGATGTGTGTGCATGCTTCAATGTGGAGAGCCTAAAAATTGTATTAGTTTTCAACGCTTTTAGTAAATTTTCTACCTGTAAGAAGATAACGTGTACCAGAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACAACAGCACGAACGCTACCAGTGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTTTGTCCTTCTCTCCCAATTGTATACTTTTATCRCTTTTGCAATCTCTCACCTGCAGTACTGCTTCGTGTGGCCAAATATTGACTTTGTCATCTCTGGTCATTCGTAACGAACGGTTTTGAACGACAACGGACCAGGAAATACTAATAATTGATAGTGTGAGAGAGGCAGCTTGAAAATAGAGCCAGTATGGGTACTTTCCAGAGATATAGTAGTTCTGGAAGTAGTTAGCAGCAATGGATCCTTGAATGATGAGCTGAGGTGCAGATTCGAGGAAGGCTTCGAAGAACCTAAAATGAAAATTTGATTTTTGAAATGTTATTCTGCAATAGCTACCTCAAAAGTGTTGCATCTCGTTCTGCTTCCACCATTTTCATGAAAAATTTTCGTTTTTCTTTGTCTGTATCATCCTTTTTGTTTTTTGTGAACATCCAACCGTAGTACAAGGCTTTGTAGTACCAAAACAACGGACCCATCTAAATATTTTCATTTAAAAAGACTTTTAAAATAAACTTACTTGAAAAATACATAGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTGACTATCAAGTGTCCAAAG</pcr_primer_p1>
		<pcr_primer_p2>GACCAGAGATGACAAAGTCAATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACAACAGCACGAACGCTACCAGTGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTTTGTCCTTCTCTCCCAATTGTATACTTTTATCGCTTTTGCAATCTCTCACCTGCAGTACTGCTTCGTGTGGCCAAATATTGACTTTGTCATCTCTGGTC</canonical_amplicon>
		<polymorphic_amplicon>GAGTGACTATCAAGTGTCCAAAGATCAGAAAAACTACATAGATTCCGAACAACAGCACGAACGCTACCAGTGTGATGATTCTCGCCAAGATCGTGAGGAATCTCCAGCAAAACTGAAAAACAATTAACTTTTTCGCCCATAATAACTTTGTCCTTCTCTCCCAATTGTATACTTTTATCRCTTTTGCAATCTCTCACCTGCAGTACTGCTTCGTGTGGCCAAATATTGACTTTGTCATCTCTGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5984</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>259056</contig_pos>
        <strand>+</strand>
        <context>GTTGGAACAT[A/T]AAAAAAAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATGACACTCACAAAGCAATTTGTCGTCTCGGAAGGTAGGTTGGAACAT</left_flank>
        <right_flank>AAAAAAAAGAAATTTTCTTTTGACAGATGGTACACGCTGAACAAGTATGG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTCACAGCTGTCAGCGGCCAACAACACAATCACCTGATGATAAAAAGAAAGAAGATATAAAACAACGAAGTATTGAACACAATTCATAGTTCAATTTTCATTCTCTATGTGTTCCAGCACAATAATTCTTGCTATTTCCACGCTAATCTGTATTCTGTCAAAGCATATCGTTACAGCTGCAGGAAGTAAAATTTAGATTGCCTTATAAATAATATATGTAACAAATTTCAGAACAATGCCCCGATATTGCAACTGTCAGGGACAATAAGGATGACACAGTTGACGCGAAAATAATGTAAGTCAGCATACATTATTTTATAACCTATTTTTCTGTTATTCGAGATATTTCGAAGGTTCTGGCCAACAAATTGCTCACATTTCGTGTGAAGGAGAGACTAGTGGTGTTGTTGAGTTGGTTTCCAACGATAACTCGTTAGGATTAATTGAAAATGACACTCACAAAGCAATTTGTCGTCTCGGAAGGTAGGTTGGAACATTAAAAAAAAGAAATTTTCTTTTGACAGATGGTACACGCTGAACAAGTATGGCAGAATTGCAGTTATCAAGGAAATAGCGTGTTATGTTCATCATTGAACTATTTTTCCATTTATCTGGTGTTTTGAATGAATCGGTTTTTTCTCCATGTAACCTAAAAATATAACTGTCAAAAAAAATTGAGAAGAGTCGAAGTCAAATCCACAGAAGTTCAAATTTATTAGGAAAAAAGAAAAATGTGTTTATTGTTTATTTTTTCACGAAATCCCGAATTGTCACAAATAAAGTTATTATTGATACAAACAAAGCGATCGTTTTCTAACAGAACTTGGCACAAGCTTGCTTTGGCTCCAAATGATTTCTGACGTATTTGATAATGTCGGGCAGCTCTTCCTGAACACAAAAAAGTGGATTTATCGATTTCAGATTTTACAAAACTCACCTTAATCAATTCCTCACAGAATGACTCTTTCTTCTTGTCATCTCCGAAAACTCTATAGCAC</canonical>
            <polymorphic>CATTCACAGCTGTCAGCGGCCAACAACACAATCACCTGATGATAAAAAGAAAGAAGATATAAAACAACGAAGTATTGAACACAATTCATAGTTCAATTTTCATTCTCTATGTGTTCCAGCACAATAATTCTTGCTATTTCCACGCTAATCTGTATTCTGTCAAAGCATATCGTTACAGCTGCAGGAAGTAAAATTTAGATTGCCTTATAAATAATATATGTAACAAATTTCAGAACAATGCCCCGATATTGCAACTGTCAGGGACAATAAGGATGACACAGTTGACGCGAAAATAATGTAAGTCAGCATACATTATTTTATAACCTATTTTTCTGTTATTCGAGATATTTCGAAGGTTCTGGCCAACAAATTGCTCACATTTCGTGTGAAGGAGAGACTAGTGGTGTTGTTGAGTTGGTTTCCAACGATAACTCGTTAGGATTAATTGAAAATGACACTCACAAAGCAATTTGTCGTCTCGGAAGGTAGGTTGGAACATWAAAAAAAAGAAATTTTCTTTTGACAGATGGTACACGCTGAACAAGTATGGCAGAATTGCAGTTATCAAGGAAATAGCGTGTTATGTTCATCATTGAACTATTTTTCCATTTATCTGGTGTTTTGAATGAATCGGTTTTTTCTCCATGTAACCTAAAAATATAACTGTCAAAAAAAATTGAGAAGAGTCGAAGTCAAATCCACAGAAGTTCAAATTTATTAGGAAAAAAGAAAAATGTGTTTATTGTTTATTTTTTCACGAAATCCCGAATTGTCACAAATAAAGTTATTATTGATACAAACAAAGCGATCGTTTTCTAACAGAACTTGGCACAAGCTTGCTTTGGCTCCAAATGATTTCTGACGTATTTGATAATGTCGGGCAGCTCTTCCTGAACACAAAAAAGTGGATTTATCGATTTCAGATTTTACAAAACTCACCTTAATCAATTCCTCACAGAATGACTCTTTCTTCTTGTCATCTCCGAAAACTCTATAGCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>442 442 59 57</canonical_bands>
                <polymorphic_bands>499 442 59</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGTGAAGGAGAGACTAGTGGT</pcr_primer_p1>
		<pcr_primer_p2>ATTCATTCAAAACACCAGATAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTGTGAAGGAGAGACTAGTGGTGTTGTTGAGTTGGTTTCCAACGATAACTCGTTAGGATTAATTGAAAATGACACTCACAAAGCAATTTGTCGTCTCGGAAGGTAGGTTGGAACATTAAAAAAAAGAAATTTTCTTTTGACAGATGGTACACGCTGAACAAGTATGGCAGAATTGCAGTTATCAAGGAAATAGCGTGTTATGTTCATCATTGAACTATTTTTCCATTTATCTGGTGTTTTGAATGAAT</canonical_amplicon>
		<polymorphic_amplicon>GTGTGAAGGAGAGACTAGTGGTGTTGTTGAGTTGGTTTCCAACGATAACTCGTTAGGATTAATTGAAAATGACACTCACAAAGCAATTTGTCGTCTCGGAAGGTAGGTTGGAACATWAAAAAAAAGAAATTTTCTTTTGACAGATGGTACACGCTGAACAAGTATGGCAGAATTGCAGTTATCAAGGAAATAGCGTGTTATGTTCATCATTGAACTATTTTTCCATTTATCTGGTGTTTTGAATGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5985</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>259033</contig_pos>
        <strand>+</strand>
        <context>CAATTTGTCG[G/T]CTCGGAAGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATAACTCGTTAGGATTAATTGAAAATGACACTCACAAAGCAATTTGTCG</left_flank>
        <right_flank>CTCGGAAGGTAGGTTGGAACATTAAAAAAAAGAAATTTTCTTTTGACAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCTATGACTCATCAGCCATTTCATTCACAGCTGTCAGCGGCCAACAACACAATCACCTGATGATAAAAAGAAAGAAGATATAAAACAACGAAGTATTGAACACAATTCATAGTTCAATTTTCATTCTCTATGTGTTCCAGCACAATAATTCTTGCTATTTCCACGCTAATCTGTATTCTGTCAAAGCATATCGTTACAGCTGCAGGAAGTAAAATTTAGATTGCCTTATAAATAATATATGTAACAAATTTCAGAACAATGCCCCGATATTGCAACTGTCAGGGACAATAAGGATGACACAGTTGACGCGAAAATAATGTAAGTCAGCATACATTATTTTATAACCTATTTTTCTGTTATTCGAGATATTTCGAAGGTTCTGGCCAACAAATTGCTCACATTTCGTGTGAAGGAGAGACTAGTGGTGTTGTTGAGTTGGTTTCCAACGATAACTCGTTAGGATTAATTGAAAATGACACTCACAAAGCAATTTGTCGTCTCGGAAGGTAGGTTGGAACATTAAAAAAAAGAAATTTTCTTTTGACAGATGGTACACGCTGAACAAGTATGGCAGAATTGCAGTTATCAAGGAAATAGCGTGTTATGTTCATCATTGAACTATTTTTCCATTTATCTGGTGTTTTGAATGAATCGGTTTTTTCTCCATGTAACCTAAAAATATAACTGTCAAAAAAAATTGAGAAGAGTCGAAGTCAAATCCACAGAAGTTCAAATTTATTAGGAAAAAAGAAAAATGTGTTTATTGTTTATTTTTTCACGAAATCCCGAATTGTCACAAATAAAGTTATTATTGATACAAACAAAGCGATCGTTTTCTAACAGAACTTGGCACAAGCTTGCTTTGGCTCCAAATGATTTCTGACGTATTTGATAATGTCGGGCAGCTCTTCCTGAACACAAAAAAGTGGATTTATCGATTTCAGATTTTACAAAACTCACCTTAATCAATTCCTCACAGAATGACTCTTTCTTCTTGT</canonical>
            <polymorphic>TGTCTATGACTCATCAGCCATTTCATTCACAGCTGTCAGCGGCCAACAACACAATCACCTGATGATAAAAAGAAAGAAGATATAAAACAACGAAGTATTGAACACAATTCATAGTTCAATTTTCATTCTCTATGTGTTCCAGCACAATAATTCTTGCTATTTCCACGCTAATCTGTATTCTGTCAAAGCATATCGTTACAGCTGCAGGAAGTAAAATTTAGATTGCCTTATAAATAATATATGTAACAAATTTCAGAACAATGCCCCGATATTGCAACTGTCAGGGACAATAAGGATGACACAGTTGACGCGAAAATAATGTAAGTCAGCATACATTATTTTATAACCTATTTTTCTGTTATTCGAGATATTTCGAAGGTTCTGGCCAACAAATTGCTCACATTTCGTGTGAAGGAGAGACTAGTGGTGTTGTTGAGTTGGTTTCCAACGATAACTCGTTAGGATTAATTGAAAATGACACTCACAAAGCAATTTGTCGKCTCGGAAGGTAGGTTGGAACATTAAAAAAAAGAAATTTTCTTTTGACAGATGGTACACGCTGAACAAGTATGGCAGAATTGCAGTTATCAAGGAAATAGCGTGTTATGTTCATCATTGAACTATTTTTCCATTTATCTGGTGTTTTGAATGAATCGGTTTTTTCTCCATGTAACCTAAAAATATAACTGTCAAAAAAAATTGAGAAGAGTCGAAGTCAAATCCACAGAAGTTCAAATTTATTAGGAAAAAAGAAAAATGTGTTTATTGTTTATTTTTTCACGAAATCCCGAATTGTCACAAATAAAGTTATTATTGATACAAACAAAGCGATCGTTTTCTAACAGAACTTGGCACAAGCTTGCTTTGGCTCCAAATGATTTCTGACGTATTTGATAATGTCGGGCAGCTCTTCCTGAACACAAAAAAGTGGATTTATCGATTTCAGATTTTACAAAACTCACCTTAATCAATTCCTCACAGAATGACTCTTTCTTCTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTGAAGGAGAGACTAGTGGT</pcr_primer_p1>
		<pcr_primer_p2>ATTCATTCAAAACACCAGATAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTGTGAAGGAGAGACTAGTGGTGTTGTTGAGTTGGTTTCCAACGATAACTCGTTAGGATTAATTGAAAATGACACTCACAAAGCAATTTGTCGTCTCGGAAGGTAGGTTGGAACATTAAAAAAAAGAAATTTTCTTTTGACAGATGGTACACGCTGAACAAGTATGGCAGAATTGCAGTTATCAAGGAAATAGCGTGTTATGTTCATCATTGAACTATTTTTCCATTTATCTGGTGTTTTGAATGAAT</canonical_amplicon>
		<polymorphic_amplicon>GTGTGAAGGAGAGACTAGTGGTGTTGTTGAGTTGGTTTCCAACGATAACTCGTTAGGATTAATTGAAAATGACACTCACAAAGCAATTTGTCGKCTCGGAAGGTAGGTTGGAACATTAAAAAAAAGAAATTTTCTTTTGACAGATGGTACACGCTGAACAAGTATGGCAGAATTGCAGTTATCAAGGAAATAGCGTGTTATGTTCATCATTGAACTATTTTTCCATTTATCTGGTGTTTTGAATGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5986</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>258878</contig_pos>
        <strand>+</strand>
        <context>ATTATTTTAT[A/G]ACCTATTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATGACACAGTTGACGCGAAAATAATGTAAGTCAGCATACATTATTTTAT</left_flank>
        <right_flank>ACCTATTTTTCTGTTATTCGAGATATTTCGAAGGTTCTGGCCAACAAATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAATGTGTAAAAAATGACATTTCCTTGGCAGTTCCAGGAATCAAGGAATTAAAATCGTGTCATGAATTTTGAAGCTGTGTATCTTCCCCAACCTCAAATATTCCCTAAAGTTTTAATTAAAAGTTTAGTTTTTCTCCGTCGGAATTCATTGGGGTGTCTATGACTCATCAGCCATTTCATTCACAGCTGTCAGCGGCCAACAACACAATCACCTGATGATAAAAAGAAAGAAGATATAAAACAACGAAGTATTGAACACAATTCATAGTTCAATTTTCATTCTCTATGTGTTCCAGCACAATAATTCTTGCTATTTCCACGCTAATCTGTATTCTGTCAAAGCATATCGTTACAGCTGCAGGAAGTAAAATTTAGATTGCCTTATAAATAATATATGTAACAAATTTCAGAACAATGCCCCGATATTGCAACTGTCAGGGACAATAAGGATGACACAGTTGACGCGAAAATAATGTAAGTCAGCATACATTATTTTATAACCTATTTTTCTGTTATTCGAGATATTTCGAAGGTTCTGGCCAACAAATTGCTCACATTTCGTGTGAAGGAGAGACTAGTGGTGTTGTTGAGTTGGTTTCCAACGATAACTCGTTAGGATTAATTGAAAATGACACTCACAAAGCAATTTGTCGTCTCGGAAGGTAGGTTGGAACATTAAAAAAAAGAAATTTTCTTTTGACAGATGGTACACGCTGAACAAGTATGGCAGAATTGCAGTTATCAAGGAAATAGCGTGTTATGTTCATCATTGAACTATTTTTCCATTTATCTGGTGTTTTGAATGAATCGGTTTTTTCTCCATGTAACCTAAAAATATAACTGTCAAAAAAAATTGAGAAGAGTCGAAGTCAAATCCACAGAAGTTCAAATTTATTAGGAAAAAAGAAAAATGTGTTTATTGTTTATTTTTTCACGAAATCCCGAATTGTCACAAATAAAGTTATTATTGATACAAACAAAGCGATCGTTTTCTAACAG</canonical>
            <polymorphic>TGAATGTGTAAAAAATGACATTTCCTTGGCAGTTCCAGGAATCAAGGAATTAAAATCGTGTCATGAATTTTGAAGCTGTGTATCTTCCCCAACCTCAAATATTCCCTAAAGTTTTAATTAAAAGTTTAGTTTTTCTCCGTCGGAATTCATTGGGGTGTCTATGACTCATCAGCCATTTCATTCACAGCTGTCAGCGGCCAACAACACAATCACCTGATGATAAAAAGAAAGAAGATATAAAACAACGAAGTATTGAACACAATTCATAGTTCAATTTTCATTCTCTATGTGTTCCAGCACAATAATTCTTGCTATTTCCACGCTAATCTGTATTCTGTCAAAGCATATCGTTACAGCTGCAGGAAGTAAAATTTAGATTGCCTTATAAATAATATATGTAACAAATTTCAGAACAATGCCCCGATATTGCAACTGTCAGGGACAATAAGGATGACACAGTTGACGCGAAAATAATGTAAGTCAGCATACATTATTTTATRACCTATTTTTCTGTTATTCGAGATATTTCGAAGGTTCTGGCCAACAAATTGCTCACATTTCGTGTGAAGGAGAGACTAGTGGTGTTGTTGAGTTGGTTTCCAACGATAACTCGTTAGGATTAATTGAAAATGACACTCACAAAGCAATTTGTCGTCTCGGAAGGTAGGTTGGAACATTAAAAAAAAGAAATTTTCTTTTGACAGATGGTACACGCTGAACAAGTATGGCAGAATTGCAGTTATCAAGGAAATAGCGTGTTATGTTCATCATTGAACTATTTTTCCATTTATCTGGTGTTTTGAATGAATCGGTTTTTTCTCCATGTAACCTAAAAATATAACTGTCAAAAAAAATTGAGAAGAGTCGAAGTCAAATCCACAGAAGTTCAAATTTATTAGGAAAAAAGAAAAATGTGTTTATTGTTTATTTTTTCACGAAATCCCGAATTGTCACAAATAAAGTTATTATTGATACAAACAAAGCGATCGTTTTCTAACAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 385 113</canonical_bands>
                <polymorphic_bands>615 385</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATGTAACAAATTTCAGAACAATG</pcr_primer_p1>
		<pcr_primer_p2>TTTGTGAGTGTCATTTTCAATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATGTAACAAATTTCAGAACAATGCCCCGATATTGCAACTGTCAGGGACAATAAGGATGACACAGTTGACGCGAAAATAATGTAAGTCAGCATACATTATTTTATAACCTATTTTTCTGTTATTCGAGATATTTCGAAGGTTCTGGCCAACAAATTGCTCACATTTCGTGTGAAGGAGAGACTAGTGGTGTTGTTGAGTTGGTTTCCAACGATAACTCGTTAGGATTAATTGAAAATGACACTCACAAA</canonical_amplicon>
		<polymorphic_amplicon>ATATGTAACAAATTTCAGAACAATGCCCCGATATTGCAACTGTCAGGGACAATAAGGATGACACAGTTGACGCGAAAATAATGTAAGTCAGCATACATTATTTTATRACCTATTTTTCTGTTATTCGAGATATTTCGAAGGTTCTGGCCAACAAATTGCTCACATTTCGTGTGAAGGAGAGACTAGTGGTGTTGTTGAGTTGGTTTCCAACGATAACTCGTTAGGATTAATTGAAAATGACACTCACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5987</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>258630</contig_pos>
        <strand>+</strand>
        <context>ACAACGAAGT[A/G]TTGAACACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAACACAATCACCTGATGATAAAAAGAAAGAAGATATAAAACAACGAAGT</left_flank>
        <right_flank>TTGAACACAATTCATAGTTCAATTTTCATTCTCTATGTGTTCCAGCACAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGGCCATCTCTCCACATGAGTTTCTTTGTCAGTGCTAGCTTATCAACATGATATCGACTCTCGGCTGCTGGAATTACCAATTCGTAGTCTAGCAGAAATCACAAGTGGCTCTGATTGACACTTTACCACATTTTAGAAAATGTTTCTTTGAAGAATATTGTTTTGAATGTTCGCAATCATTCTGCCATTGAACACCAGAAAAAGTCAACCGGCATTTATCTTTTTTTTCTCTCAAAACCAGCACAGTGAATGTGTAAAAAATGACATTTCCTTGGCAGTTCCAGGAATCAAGGAATTAAAATCGTGTCATGAATTTTGAAGCTGTGTATCTTCCCCAACCTCAAATATTCCCTAAAGTTTTAATTAAAAGTTTAGTTTTTCTCCGTCGGAATTCATTGGGGTGTCTATGACTCATCAGCCATTTCATTCACAGCTGTCAGCGGCCAACAACACAATCACCTGATGATAAAAAGAAAGAAGATATAAAACAACGAAGTATTGAACACAATTCATAGTTCAATTTTCATTCTCTATGTGTTCCAGCACAATAATTCTTGCTATTTCCACGCTAATCTGTATTCTGTCAAAGCATATCGTTACAGCTGCAGGAAGTAAAATTTAGATTGCCTTATAAATAATATATGTAACAAATTTCAGAACAATGCCCCGATATTGCAACTGTCAGGGACAATAAGGATGACACAGTTGACGCGAAAATAATGTAAGTCAGCATACATTATTTTATAACCTATTTTTCTGTTATTCGAGATATTTCGAAGGTTCTGGCCAACAAATTGCTCACATTTCGTGTGAAGGAGAGACTAGTGGTGTTGTTGAGTTGGTTTCCAACGATAACTCGTTAGGATTAATTGAAAATGACACTCACAAAGCAATTTGTCGTCTCGGAAGGTAGGTTGGAACATTAAAAAAAAGAAATTTTCTTTTGACAGATGGTACACGCTGAACAAGTATGGCAGAATTGCAGTTATCAAGGAAAT</canonical>
            <polymorphic>CTCGGCCATCTCTCCACATGAGTTTCTTTGTCAGTGCTAGCTTATCAACATGATATCGACTCTCGGCTGCTGGAATTACCAATTCGTAGTCTAGCAGAAATCACAAGTGGCTCTGATTGACACTTTACCACATTTTAGAAAATGTTTCTTTGAAGAATATTGTTTTGAATGTTCGCAATCATTCTGCCATTGAACACCAGAAAAAGTCAACCGGCATTTATCTTTTTTTTCTCTCAAAACCAGCACAGTGAATGTGTAAAAAATGACATTTCCTTGGCAGTTCCAGGAATCAAGGAATTAAAATCGTGTCATGAATTTTGAAGCTGTGTATCTTCCCCAACCTCAAATATTCCCTAAAGTTTTAATTAAAAGTTTAGTTTTTCTCCGTCGGAATTCATTGGGGTGTCTATGACTCATCAGCCATTTCATTCACAGCTGTCAGCGGCCAACAACACAATCACCTGATGATAAAAAGAAAGAAGATATAAAACAACGAAGTRTTGAACACAATTCATAGTTCAATTTTCATTCTCTATGTGTTCCAGCACAATAATTCTTGCTATTTCCACGCTAATCTGTATTCTGTCAAAGCATATCGTTACAGCTGCAGGAAGTAAAATTTAGATTGCCTTATAAATAATATATGTAACAAATTTCAGAACAATGCCCCGATATTGCAACTGTCAGGGACAATAAGGATGACACAGTTGACGCGAAAATAATGTAAGTCAGCATACATTATTTTATAACCTATTTTTCTGTTATTCGAGATATTTCGAAGGTTCTGGCCAACAAATTGCTCACATTTCGTGTGAAGGAGAGACTAGTGGTGTTGTTGAGTTGGTTTCCAACGATAACTCGTTAGGATTAATTGAAAATGACACTCACAAAGCAATTTGTCGTCTCGGAAGGTAGGTTGGAACATTAAAAAAAAGAAATTTTCTTTTGACAGATGGTACACGCTGAACAAGTATGGCAGAATTGCAGTTATCAAGGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACCTCAAATATTCCCTAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GAATACAGATTAGCGTGGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAACCTCAAATATTCCCTAAAGTTTTAATTAAAAGTTTAGTTTTTCTCCGTCGGAATTCATTGGGGTGTCTATGACTCATCAGCCATTTCATTCACAGCTGTCAGCGGCCAACAACACAATCACCTGATGATAAAAAGAAAGAAGATATAAAACAACGAAGTATTGAACACAATTCATAGTTCAATTTTCATTCTCTATGTGTTCCAGCACAATAATTCTTGCTATTTCCACGCTAATCTGTATTC</canonical_amplicon>
		<polymorphic_amplicon>CAACCTCAAATATTCCCTAAAGTTTTAATTAAAAGTTTAGTTTTTCTCCGTCGGAATTCATTGGGGTGTCTATGACTCATCAGCCATTTCATTCACAGCTGTCAGCGGCCAACAACACAATCACCTGATGATAAAAAGAAAGAAGATATAAAACAACGAAGTRTTGAACACAATTCATAGTTCAATTTTCATTCTCTATGTGTTCCAGCACAATAATTCTTGCTATTTCCACGCTAATCTGTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5988</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>258609</contig_pos>
        <strand>+</strand>
        <context>TAAAAAGAAA[A/G]AAGATATAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCACAGCTGTCAGCGGCCAACAACACAATCACCTGATGATAAAAAGAAA</left_flank>
        <right_flank>AAGATATAAAACAACGAAGTATTGAACACAATTCATAGTTCAATTTTCAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAACCAGCGCCTTAGACCGCTCGGCCATCTCTCCACATGAGTTTCTTTGTCAGTGCTAGCTTATCAACATGATATCGACTCTCGGCTGCTGGAATTACCAATTCGTAGTCTAGCAGAAATCACAAGTGGCTCTGATTGACACTTTACCACATTTTAGAAAATGTTTCTTTGAAGAATATTGTTTTGAATGTTCGCAATCATTCTGCCATTGAACACCAGAAAAAGTCAACCGGCATTTATCTTTTTTTTCTCTCAAAACCAGCACAGTGAATGTGTAAAAAATGACATTTCCTTGGCAGTTCCAGGAATCAAGGAATTAAAATCGTGTCATGAATTTTGAAGCTGTGTATCTTCCCCAACCTCAAATATTCCCTAAAGTTTTAATTAAAAGTTTAGTTTTTCTCCGTCGGAATTCATTGGGGTGTCTATGACTCATCAGCCATTTCATTCACAGCTGTCAGCGGCCAACAACACAATCACCTGATGATAAAAAGAAAGAAGATATAAAACAACGAAGTATTGAACACAATTCATAGTTCAATTTTCATTCTCTATGTGTTCCAGCACAATAATTCTTGCTATTTCCACGCTAATCTGTATTCTGTCAAAGCATATCGTTACAGCTGCAGGAAGTAAAATTTAGATTGCCTTATAAATAATATATGTAACAAATTTCAGAACAATGCCCCGATATTGCAACTGTCAGGGACAATAAGGATGACACAGTTGACGCGAAAATAATGTAAGTCAGCATACATTATTTTATAACCTATTTTTCTGTTATTCGAGATATTTCGAAGGTTCTGGCCAACAAATTGCTCACATTTCGTGTGAAGGAGAGACTAGTGGTGTTGTTGAGTTGGTTTCCAACGATAACTCGTTAGGATTAATTGAAAATGACACTCACAAAGCAATTTGTCGTCTCGGAAGGTAGGTTGGAACATTAAAAAAAAGAAATTTTCTTTTGACAGATGGTACACGCTGAACAAGTATGGCAG</canonical>
            <polymorphic>TTAAACCAGCGCCTTAGACCGCTCGGCCATCTCTCCACATGAGTTTCTTTGTCAGTGCTAGCTTATCAACATGATATCGACTCTCGGCTGCTGGAATTACCAATTCGTAGTCTAGCAGAAATCACAAGTGGCTCTGATTGACACTTTACCACATTTTAGAAAATGTTTCTTTGAAGAATATTGTTTTGAATGTTCGCAATCATTCTGCCATTGAACACCAGAAAAAGTCAACCGGCATTTATCTTTTTTTTCTCTCAAAACCAGCACAGTGAATGTGTAAAAAATGACATTTCCTTGGCAGTTCCAGGAATCAAGGAATTAAAATCGTGTCATGAATTTTGAAGCTGTGTATCTTCCCCAACCTCAAATATTCCCTAAAGTTTTAATTAAAAGTTTAGTTTTTCTCCGTCGGAATTCATTGGGGTGTCTATGACTCATCAGCCATTTCATTCACAGCTGTCAGCGGCCAACAACACAATCACCTGATGATAAAAAGAAARAAGATATAAAACAACGAAGTATTGAACACAATTCATAGTTCAATTTTCATTCTCTATGTGTTCCAGCACAATAATTCTTGCTATTTCCACGCTAATCTGTATTCTGTCAAAGCATATCGTTACAGCTGCAGGAAGTAAAATTTAGATTGCCTTATAAATAATATATGTAACAAATTTCAGAACAATGCCCCGATATTGCAACTGTCAGGGACAATAAGGATGACACAGTTGACGCGAAAATAATGTAAGTCAGCATACATTATTTTATAACCTATTTTTCTGTTATTCGAGATATTTCGAAGGTTCTGGCCAACAAATTGCTCACATTTCGTGTGAAGGAGAGACTAGTGGTGTTGTTGAGTTGGTTTCCAACGATAACTCGTTAGGATTAATTGAAAATGACACTCACAAAGCAATTTGTCGTCTCGGAAGGTAGGTTGGAACATTAAAAAAAAGAAATTTTCTTTTGACAGATGGTACACGCTGAACAAGTATGGCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACCTCAAATATTCCCTAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GAATACAGATTAGCGTGGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAACCTCAAATATTCCCTAAAGTTTTAATTAAAAGTTTAGTTTTTCTCCGTCGGAATTCATTGGGGTGTCTATGACTCATCAGCCATTTCATTCACAGCTGTCAGCGGCCAACAACACAATCACCTGATGATAAAAAGAAAGAAGATATAAAACAACGAAGTATTGAACACAATTCATAGTTCAATTTTCATTCTCTATGTGTTCCAGCACAATAATTCTTGCTATTTCCACGCTAATCTGTATTC</canonical_amplicon>
		<polymorphic_amplicon>CAACCTCAAATATTCCCTAAAGTTTTAATTAAAAGTTTAGTTTTTCTCCGTCGGAATTCATTGGGGTGTCTATGACTCATCAGCCATTTCATTCACAGCTGTCAGCGGCCAACAACACAATCACCTGATGATAAAAAGAAARAAGATATAAAACAACGAAGTATTGAACACAATTCATAGTTCAATTTTCATTCTCTATGTGTTCCAGCACAATAATTCTTGCTATTTCCACGCTAATCTGTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5989</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>268185</contig_pos>
        <strand>+</strand>
        <context>CTGAGATAGG[A/G]AACTGTTGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGCATATGTGCATTTTCAAGTGGAGAGTTTGGTCAAAAACTGAGATAGG</left_flank>
        <right_flank>AACTGTTGGGGAGGATGGTCACAAAAAGGCAGCTCTTCCTTTTCGTACAG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTGTGAATGCAAAGTTCTCAATCTAGGTCTGTTTTATATTTTGCAAAGTTTTTAAAGTATTCCGACACTTGACAGCCAAGGTTCAGTTTCCTGAAAATGGTCAACATCAAAAGGAAAACACTTTTTTGTACATCTTATTGACCGATACTGTATACCGGAAGGTGCTAGCTGGGAAATCTGCAAACGGAACCCATCTGGTTGTTGACTAGGTGTTGACCCGAAAGATGGAGCATATAAAATGAGGTCAGCAGGAATAATGAATTGCGCTCGGGGACACATGTGGTCAGCCAGTCATCCACAATTTCATAATTGCCTAGCCACCAACAAAAACGATGGAAACAGAACAATAGCTGATGCTTAAGGCTTGATTTATATACTTTGGTCAAAACCAGGTGATGGTGGGAGAAAGTGCTCGTGAGGAAAATAGAAATGTGTTATTGATAAACAGGCATATGTGCATTTTCAAGTGGAGAGTTTGGTCAAAAACTGAGATAGGGAACTGTTGGGGAGGATGGTCACAAAAAGGCAGCTCTTCCTTTTCGTACAGTTTTTTTTTCTAAGCGCAAAAAAAGCAAAATATTTGCACTAGGTTTTTCTCTTTCTACGCTTAGGAATGTAAAAACAACGAGAAAAAATGCTTCAGCTGATCATCCGGTCAGCTGTGAGTCAGAGATAAGTGGAGGAGAGACAAGGAAGGATGTGTTGCGAAATATTTGGACGAATACAGTCGTTTTATAAGTTATTGTTTGGGAAGTGAGAATGTTTTGAAAAAAAAAACTTCTTAAAAGCGTACAGTGCCGGCCACAAATACATGAAAAAACGTGTTTTTGCAGTTGATTTTGACCGTTCTCAAGAGTCTGGAGCTTGTCTGATAAGTGTAGGATCACATTGAAAATTTTGAAGGTTTTAAAACAGATTTAGATTAAAAACTGTGCATTCACAAAATTTTTTTTTAATTCCTAAATTTTCAGCTACTTGGCAAATCCTGAAAGACACC</canonical>
            <polymorphic>TTTCTGTGAATGCAAAGTTCTCAATCTAGGTCTGTTTTATATTTTGCAAAGTTTTTAAAGTATTCCGACACTTGACAGCCAAGGTTCAGTTTCCTGAAAATGGTCAACATCAAAAGGAAAACACTTTTTTGTACATCTTATTGACCGATACTGTATACCGGAAGGTGCTAGCTGGGAAATCTGCAAACGGAACCCATCTGGTTGTTGACTAGGTGTTGACCCGAAAGATGGAGCATATAAAATGAGGTCAGCAGGAATAATGAATTGCGCTCGGGGACACATGTGGTCAGCCAGTCATCCACAATTTCATAATTGCCTAGCCACCAACAAAAACGATGGAAACAGAACAATAGCTGATGCTTAAGGCTTGATTTATATACTTTGGTCAAAACCAGGTGATGGTGGGAGAAAGTGCTCGTGAGGAAAATAGAAATGTGTTATTGATAAACAGGCATATGTGCATTTTCAAGTGGAGAGTTTGGTCAAAAACTGAGATAGGRAACTGTTGGGGAGGATGGTCACAAAAAGGCAGCTCTTCCTTTTCGTACAGTTTTTTTTTCTAAGCGCAAAAAAAGCAAAATATTTGCACTAGGTTTTTCTCTTTCTACGCTTAGGAATGTAAAAACAACGAGAAAAAATGCTTCAGCTGATCATCCGGTCAGCTGTGAGTCAGAGATAAGTGGAGGAGAGACAAGGAAGGATGTGTTGCGAAATATTTGGACGAATACAGTCGTTTTATAAGTTATTGTTTGGGAAGTGAGAATGTTTTGAAAAAAAAAACTTCTTAAAAGCGTACAGTGCCGGCCACAAATACATGAAAAAACGTGTTTTTGCAGTTGATTTTGACCGTTCTCAAGAGTCTGGAGCTTGTCTGATAAGTGTAGGATCACATTGAAAATTTTGAAGGTTTTAAAACAGATTTAGATTAAAAACTGTGCATTCACAAAATTTTTTTTTAATTCCTAAATTTTCAGCTACTTGGCAAATCCTGAAAGACACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGCTTGATTTATATACTTTGGTC</pcr_primer_p1>
		<pcr_primer_p2>TAAGCGTAGAAAGAGAAAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGCTTGATTTATATACTTTGGTCAAAACCAGGTGATGGTGGGAGAAAGTGCTCGTGAGGAAAATAGAAATGTGTTATTGATAAACAGGCATATGTGCATTTTCAAGTGGAGAGTTTGGTCAAAAACTGAGATAGGGAACTGTTGGGGAGGATGGTCACAAAAAGGCAGCTCTTCCTTTTCGTACAGTTTTTTTTTCTAAGCGCAAAAAAAGCAAAATATTTGCACTAGGTTTTTCTCTTTCTACGCTTA</canonical_amplicon>
		<polymorphic_amplicon>AGGCTTGATTTATATACTTTGGTCAAAACCAGGTGATGGTGGGAGAAAGTGCTCGTGAGGAAAATAGAAATGTGTTATTGATAAACAGGCATATGTGCATTTTCAAGTGGAGAGTTTGGTCAAAAACTGAGATAGGRAACTGTTGGGGAGGATGGTCACAAAAAGGCAGCTCTTCCTTTTCGTACAGTTTTTTTTTCTAAGCGCAAAAAAAGCAAAATATTTGCACTAGGTTTTTCTCTTTCTACGCTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5990</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>270197</contig_pos>
        <strand>+</strand>
        <context>AAATACTATA[A/T]TATCCCAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTATTGCATCCTTCCAGAAACTAGTTCGATTTTTTCATTGAAATACTATA</left_flank>
        <right_flank>TATCCCAAAAAAATAAAATACATTGGAATGCTATGGCATTTTAAAAACCG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGCAAACATTGGCTTTTCTCCCCAAATTGACCACCGCCTCCATGTTTGTGCATATTTAGGGGGTCTCTGCTGCACGAAAAATGGCCTCTTCTTGTATGAAAGGAGGGTTCTTTCCGCGCGGCGCGTTAAGCGGTGGGTGGTGTTGGCGTTAAGGCGGTCGGCACGGATCAAGGTTATACTATTTCGTACGAGAAACCAAAAAAGGGCACCTTGTAAGAGATTGTTAGAGCTGGAGTAGATGTCAGGGCGTGATAAATATGGGGGTTAGTGGTGGGAAGAGATGGATAGATAAACAAATAATGCATAACGACGAATCTGGCACAAAAATACTATTCAATACTGATTAAGGAAGTTTAAACGGGAAAATTTTCAACCGGCCAGTTCGAAAATTCCTTCGTACGAATAAACCCACCATTGAATGCCAAAATTTTGTGTCACCATCACCATGTTATTGCATCCTTCCAGAAACTAGTTCGATTTTTTCATTGAAATACTATAATATCCCAAAAAAATAAAATACATTGGAATGCTATGGCATTTTAAAAACCGGTCGTTCCTTTTTTTAAGATGGATAAAAAATATGGAGAATCGACAATTAAAGGCCTAGTATTTTCGGGTATTTTTTCTTGTAAAAATTAAACTATTTGCGGTATAATGGAATGGGTTCAATAGTTCAAATGATTTTCTATAAATATAGGCGATTTGGAAGAATTCGAACCAGGTACCAGTTTAACTTTTTTAAGAAGAAGGAAGTTTTTTTTTGTTACGATTTGAACAATTATAGGCCCAGGCGGAGAAGGTTTCAGTTCAAGGAAAATCACAAACGTCAATTTTAATATTACCCGGAAATCGGAGTTACACAATTAATAAAAATAAAGATAACGAAAAAAGTTTAACGGTGTTTATCAACAAAAAAATTAAATACAGTGAATGCTCTGATAGAAGCTCACCCTGTACGTCCACTTTGAGCTCAATTATCTCGGTTGCTTCAAGAGATAT</canonical>
            <polymorphic>GTGCAAACATTGGCTTTTCTCCCCAAATTGACCACCGCCTCCATGTTTGTGCATATTTAGGGGGTCTCTGCTGCACGAAAAATGGCCTCTTCTTGTATGAAAGGAGGGTTCTTTCCGCGCGGCGCGTTAAGCGGTGGGTGGTGTTGGCGTTAAGGCGGTCGGCACGGATCAAGGTTATACTATTTCGTACGAGAAACCAAAAAAGGGCACCTTGTAAGAGATTGTTAGAGCTGGAGTAGATGTCAGGGCGTGATAAATATGGGGGTTAGTGGTGGGAAGAGATGGATAGATAAACAAATAATGCATAACGACGAATCTGGCACAAAAATACTATTCAATACTGATTAAGGAAGTTTAAACGGGAAAATTTTCAACCGGCCAGTTCGAAAATTCCTTCGTACGAATAAACCCACCATTGAATGCCAAAATTTTGTGTCACCATCACCATGTTATTGCATCCTTCCAGAAACTAGTTCGATTTTTTCATTGAAATACTATAWTATCCCAAAAAAATAAAATACATTGGAATGCTATGGCATTTTAAAAACCGGTCGTTCCTTTTTTTAAGATGGATAAAAAATATGGAGAATCGACAATTAAAGGCCTAGTATTTTCGGGTATTTTTTCTTGTAAAAATTAAACTATTTGCGGTATAATGGAATGGGTTCAATAGTTCAAATGATTTTCTATAAATATAGGCGATTTGGAAGAATTCGAACCAGGTACCAGTTTAACTTTTTTAAGAAGAAGGAAGTTTTTTTTTGTTACGATTTGAACAATTATAGGCCCAGGCGGAGAAGGTTTCAGTTCAAGGAAAATCACAAACGTCAATTTTAATATTACCCGGAAATCGGAGTTACACAATTAATAAAAATAAAGATAACGAAAAAAGTTTAACGGTGTTTATCAACAAAAAAATTAAATACAGTGAATGCTCTGATAGAAGCTCACCCTGTACGTCCACTTTGAGCTCAATTATCTCGGTTGCTTCAAGAGATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTTTGTGTCACCATCAC</pcr_primer_p1>
		<pcr_primer_p2>AACTATTGAACCCATTCCATTAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAATTTTGTGTCACCATCACCATGTTATTGCATCCTTCCAGAAACTAGTTCGATTTTTTCATTGAAATACTATAATATCCCAAAAAAATAAAATACATTGGAATGCTATGGCATTTTAAAAACCGGTCGTTCCTTTTTTTAAGATGGATAAAAAATATGGAGAATCGACAATTAAAGGCCTAGTATTTTCGGGTATTTTTTCTTGTAAAAATTAAACTATTTGCGGTATAATGGAATGGGTTCAATAGTT</canonical_amplicon>
		<polymorphic_amplicon>AAAATTTTGTGTCACCATCACCATGTTATTGCATCCTTCCAGAAACTAGTTCGATTTTTTCATTGAAATACTATAWTATCCCAAAAAAATAAAATACATTGGAATGCTATGGCATTTTAAAAACCGGTCGTTCCTTTTTTTAAGATGGATAAAAAATATGGAGAATCGACAATTAAAGGCCTAGTATTTTCGGGTATTTTTTCTTGTAAAAATTAAACTATTTGCGGTATAATGGAATGGGTTCAATAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5991</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>269999</contig_pos>
        <strand>+</strand>
        <context>AAACAAATAA[G/T]GCATAACGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATAAATATGGGGGTTAGTGGTGGGAAGAGATGGATAGATAAACAAATAA</left_flank>
        <right_flank>GCATAACGACGAATCTGGCACAAAAATACTATTCAATACTGATTAAGGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCATTTTGTTTCTGTTTCTGTTTCCCCCTGGGTTGTTTTTTGTACAAAAGAATAAGGAGAAGGAGGAAAAGAGGATTTCGTTCTCTTTTTTGCCTTCTTTTTGGAGCGATTTTGAGGTTGTTTCGACTTTGCGAGGGCAAAGGCGAGCAACTAGACGAACCAGAAACCAATTGTTCAACTGGATGATGGAAAGAACGGTGCAAACATTGGCTTTTCTCCCCAAATTGACCACCGCCTCCATGTTTGTGCATATTTAGGGGGTCTCTGCTGCACGAAAAATGGCCTCTTCTTGTATGAAAGGAGGGTTCTTTCCGCGCGGCGCGTTAAGCGGTGGGTGGTGTTGGCGTTAAGGCGGTCGGCACGGATCAAGGTTATACTATTTCGTACGAGAAACCAAAAAAGGGCACCTTGTAAGAGATTGTTAGAGCTGGAGTAGATGTCAGGGCGTGATAAATATGGGGGTTAGTGGTGGGAAGAGATGGATAGATAAACAAATAATGCATAACGACGAATCTGGCACAAAAATACTATTCAATACTGATTAAGGAAGTTTAAACGGGAAAATTTTCAACCGGCCAGTTCGAAAATTCCTTCGTACGAATAAACCCACCATTGAATGCCAAAATTTTGTGTCACCATCACCATGTTATTGCATCCTTCCAGAAACTAGTTCGATTTTTTCATTGAAATACTATAATATCCCAAAAAAATAAAATACATTGGAATGCTATGGCATTTTAAAAACCGGTCGTTCCTTTTTTTAAGATGGATAAAAAATATGGAGAATCGACAATTAAAGGCCTAGTATTTTCGGGTATTTTTTCTTGTAAAAATTAAACTATTTGCGGTATAATGGAATGGGTTCAATAGTTCAAATGATTTTCTATAAATATAGGCGATTTGGAAGAATTCGAACCAGGTACCAGTTTAACTTTTTTAAGAAGAAGGAAGTTTTTTTTTGTTACGATTTGAACAATTATAGGCCCAGGCGGAGAAGGT</canonical>
            <polymorphic>GTCATTTTGTTTCTGTTTCTGTTTCCCCCTGGGTTGTTTTTTGTACAAAAGAATAAGGAGAAGGAGGAAAAGAGGATTTCGTTCTCTTTTTTGCCTTCTTTTTGGAGCGATTTTGAGGTTGTTTCGACTTTGCGAGGGCAAAGGCGAGCAACTAGACGAACCAGAAACCAATTGTTCAACTGGATGATGGAAAGAACGGTGCAAACATTGGCTTTTCTCCCCAAATTGACCACCGCCTCCATGTTTGTGCATATTTAGGGGGTCTCTGCTGCACGAAAAATGGCCTCTTCTTGTATGAAAGGAGGGTTCTTTCCGCGCGGCGCGTTAAGCGGTGGGTGGTGTTGGCGTTAAGGCGGTCGGCACGGATCAAGGTTATACTATTTCGTACGAGAAACCAAAAAAGGGCACCTTGTAAGAGATTGTTAGAGCTGGAGTAGATGTCAGGGCGTGATAAATATGGGGGTTAGTGGTGGGAAGAGATGGATAGATAAACAAATAAKGCATAACGACGAATCTGGCACAAAAATACTATTCAATACTGATTAAGGAAGTTTAAACGGGAAAATTTTCAACCGGCCAGTTCGAAAATTCCTTCGTACGAATAAACCCACCATTGAATGCCAAAATTTTGTGTCACCATCACCATGTTATTGCATCCTTCCAGAAACTAGTTCGATTTTTTCATTGAAATACTATAATATCCCAAAAAAATAAAATACATTGGAATGCTATGGCATTTTAAAAACCGGTCGTTCCTTTTTTTAAGATGGATAAAAAATATGGAGAATCGACAATTAAAGGCCTAGTATTTTCGGGTATTTTTTCTTGTAAAAATTAAACTATTTGCGGTATAATGGAATGGGTTCAATAGTTCAAATGATTTTCTATAAATATAGGCGATTTGGAAGAATTCGAACCAGGTACCAGTTTAACTTTTTTAAGAAGAAGGAAGTTTTTTTTTGTTACGATTTGAACAATTATAGGCCCAGGCGGAGAAGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATGCAT</site>
                <isoschizomers>
                    <enzyme>BfrBI</enzyme>
                    <enzyme>EcoT22I</enzyme>
                    <enzyme>Mph1103I</enzyme>
                    <enzyme>NsiI</enzyme>
                    <enzyme>Ppu10I</enzyme>
                    <enzyme>Zsp2I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>347 230 201 152 48 22</canonical_bands>
                <polymorphic_bands>382 347 201 48 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTTAGAGCTGGAGTAGATGTC</pcr_primer_p1>
		<pcr_primer_p2>GTTTCTGGAAGGATGCAATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGTTAGAGCTGGAGTAGATGTCAGGGCGTGATAAATATGGGGGTTAGTGGTGGGAAGAGATGGATAGATAAACAAATAATGCATAACGACGAATCTGGCACAAAAATACTATTCAATACTGATTAAGGAAGTTTAAACGGGAAAATTTTCAACCGGCCAGTTCGAAAATTCCTTCGTACGAATAAACCCACCATTGAATGCCAAAATTTTGTGTCACCATCACCATGTTATTGCATCCTTCCAGAAAC</canonical_amplicon>
		<polymorphic_amplicon>TTGTTAGAGCTGGAGTAGATGTCAGGGCGTGATAAATATGGGGGTTAGTGGTGGGAAGAGATGGATAGATAAACAAATAAKGCATAACGACGAATCTGGCACAAAAATACTATTCAATACTGATTAAGGAAGTTTAAACGGGAAAATTTTCAACCGGCCAGTTCGAAAATTCCTTCGTACGAATAAACCCACCATTGAATGCCAAAATTTTGTGTCACCATCACCATGTTATTGCATCCTTCCAGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb5999</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>308113</contig_pos>
        <strand>+</strand>
        <context>TCAAGAGAGC[G/T]GTTCCCGCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCCAAATACAAAAGCATCCACCTTGCCATATGTTTTGGGTTCAAGAGAGC</left_flank>
        <right_flank>GTTCCCGCATAGGACTTCCAATAATCCTGGTATGACGGACATGTGAAATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTTGGCATATTGAAAAGACCATGGAATGCACGGGGGAAATGCTGCCAAATTGTGCGAACGCCTGATTGTTTAAGTTTATTGGCATACTGGACTCCTTCGTCTCTGAAATTGTGAAATTTTAAAAGTAGTCTTCAAAAAGGTTGACTCACTGAAGAATGTCGTAACCAGCAGTTAATACCAATGCTGGCGGAAGACCTTTCGTATCTCCGAACATTGGAGACACATCTGGATTTGTTCCAAGTTTGAAGAACTGCTCTGCCAACTCTCGGTCCACTGGTTTATCCCGTTTTCTTTCATTTAAGTGGTACAACCACTCGGAGTACTGCTTTTGCTCGGAAAGCTCACTAAAAAATATTATTGAATTTTTATTCGAAAATTCTTGTTTCTTACGGTAGCACATGCTGTGAATTCATAACCTTCTTAATGTTACTTTTAGTTGCATCCATTCCCAAATACAAAAGCATCCACCTTGCCATATGTTTTGGGTTCAAGAGAGCTGTTCCCGCATAGGACTTCCAATAATCCTGGTATGACGGACATGTGAAATTGAAAACATGTGTGACCGGATAGATCAGTATCTGACCCCTAAGAACGTCCCGGTTTTCTCGATGTAATCGTTGACACACAACTGCCGCCAGGTTTCCGCCAGCACTATCTCCAGAAATCAAAACTTTCTTTTTGTTGAACGGGAGGTCCGGCAATCTAAATAGATGAAATTATAATTCTTTAGATAATTGAATGGTGAGATACCCATTTTCACAGAGTTCCGATACAACTGCATAACAATCGTTGAGTCCAGCAGGGAATGGGTGTTCTGGAGCAAGACGATAGTCAATGGAGACTCCGTGGCAACCGATTCTGCGGCAAAGTTGATACATTATTCCGTCATAGTATCCTGTAAAGCTGTCATTGTGGTCAGCAGTTTTTTAATTCATGTAGAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATTTGCTGAA</canonical>
            <polymorphic>TGTTTGGCATATTGAAAAGACCATGGAATGCACGGGGGAAATGCTGCCAAATTGTGCGAACGCCTGATTGTTTAAGTTTATTGGCATACTGGACTCCTTCGTCTCTGAAATTGTGAAATTTTAAAAGTAGTCTTCAAAAAGGTTGACTCACTGAAGAATGTCGTAACCAGCAGTTAATACCAATGCTGGCGGAAGACCTTTCGTATCTCCGAACATTGGAGACACATCTGGATTTGTTCCAAGTTTGAAGAACTGCTCTGCCAACTCTCGGTCCACTGGTTTATCCCGTTTTCTTTCATTTAAGTGGTACAACCACTCGGAGTACTGCTTTTGCTCGGAAAGCTCACTAAAAAATATTATTGAATTTTTATTCGAAAATTCTTGTTTCTTACGGTAGCACATGCTGTGAATTCATAACCTTCTTAATGTTACTTTTAGTTGCATCCATTCCCAAATACAAAAGCATCCACCTTGCCATATGTTTTGGGTTCAAGAGAGCKGTTCCCGCATAGGACTTCCAATAATCCTGGTATGACGGACATGTGAAATTGAAAACATGTGTGACCGGATAGATCAGTATCTGACCCCTAAGAACGTCCCGGTTTTCTCGATGTAATCGTTGACACACAACTGCCGCCAGGTTTCCGCCAGCACTATCTCCAGAAATCAAAACTTTCTTTTTGTTGAACGGGAGGTCCGGCAATCTAAATAGATGAAATTATAATTCTTTAGATAATTGAATGGTGAGATACCCATTTTCACAGAGTTCCGATACAACTGCATAACAATCGTTGAGTCCAGCAGGGAATGGGTGTTCTGGAGCAAGACGATAGTCAATGGAGACTCCGTGGCAACCGATTCTGCGGCAAAGTTGATACATTATTCCGTCATAGTATCCTGTAAAGCTGTCATTGTGGTCAGCAGTTTTTTAATTCATGTAGAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATTTGCTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>407 342 156 95</canonical_bands>
                <polymorphic_bands>563 342 95</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>407 342 156 95</canonical_bands>
                <polymorphic_bands>563 342 95</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTACTTTTAGTTGCATCCATTC</pcr_primer_p1>
		<pcr_primer_p2>GAAAGTTTTGATTTCTGGAGATAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTACTTTTAGTTGCATCCATTCCCAAATACAAAAGCATCCACCTTGCCATATGTTTTGGGTTCAAGAGAGCTGTTCCCGCATAGGACTTCCAATAATCCTGGTATGACGGACATGTGAAATTGAAAACATGTGTGACCGGATAGATCAGTATCTGACCCCTAAGAACGTCCCGGTTTTCTCGATGTAATCGTTGACACACAACTGCCGCCAGGTTTCCGCCAGCACTATCTCCAGAAATCAAAACTTTC</canonical_amplicon>
		<polymorphic_amplicon>GTTACTTTTAGTTGCATCCATTCCCAAATACAAAAGCATCCACCTTGCCATATGTTTTGGGTTCAAGAGAGCKGTTCCCGCATAGGACTTCCAATAATCCTGGTATGACGGACATGTGAAATTGAAAACATGTGTGACCGGATAGATCAGTATCTGACCCCTAAGAACGTCCCGGTTTTCTCGATGTAATCGTTGACACACAACTGCCGCCAGGTTTCCGCCAGCACTATCTCCAGAAATCAAAACTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6000</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>308154</contig_pos>
        <strand>+</strand>
        <context>TATGACGGAC[A/T]TGTGAAATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAGAGAGCTGTTCCCGCATAGGACTTCCAATAATCCTGGTATGACGGAC</left_flank>
        <right_flank>TGTGAAATTGAAAACATGTGTGACCGGATAGATCAGTATCTGACCCCTAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCTGCCAAATTGTGCGAACGCCTGATTGTTTAAGTTTATTGGCATACTGGACTCCTTCGTCTCTGAAATTGTGAAATTTTAAAAGTAGTCTTCAAAAAGGTTGACTCACTGAAGAATGTCGTAACCAGCAGTTAATACCAATGCTGGCGGAAGACCTTTCGTATCTCCGAACATTGGAGACACATCTGGATTTGTTCCAAGTTTGAAGAACTGCTCTGCCAACTCTCGGTCCACTGGTTTATCCCGTTTTCTTTCATTTAAGTGGTACAACCACTCGGAGTACTGCTTTTGCTCGGAAAGCTCACTAAAAAATATTATTGAATTTTTATTCGAAAATTCTTGTTTCTTACGGTAGCACATGCTGTGAATTCATAACCTTCTTAATGTTACTTTTAGTTGCATCCATTCCCAAATACAAAAGCATCCACCTTGCCATATGTTTTGGGTTCAAGAGAGCTGTTCCCGCATAGGACTTCCAATAATCCTGGTATGACGGACATGTGAAATTGAAAACATGTGTGACCGGATAGATCAGTATCTGACCCCTAAGAACGTCCCGGTTTTCTCGATGTAATCGTTGACACACAACTGCCGCCAGGTTTCCGCCAGCACTATCTCCAGAAATCAAAACTTTCTTTTTGTTGAACGGGAGGTCCGGCAATCTAAATAGATGAAATTATAATTCTTTAGATAATTGAATGGTGAGATACCCATTTTCACAGAGTTCCGATACAACTGCATAACAATCGTTGAGTCCAGCAGGGAATGGGTGTTCTGGAGCAAGACGATAGTCAATGGAGACTCCGTGGCAACCGATTCTGCGGCAAAGTTGATACATTATTCCGTCATAGTATCCTGTAAAGCTGTCATTGTGGTCAGCAGTTTTTTAATTCATGTAGAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATTTGCTGAATTTTTCTAATATATCGTCTAAATTACATTCTAAATTGTCTA</canonical>
            <polymorphic>TGCTGCCAAATTGTGCGAACGCCTGATTGTTTAAGTTTATTGGCATACTGGACTCCTTCGTCTCTGAAATTGTGAAATTTTAAAAGTAGTCTTCAAAAAGGTTGACTCACTGAAGAATGTCGTAACCAGCAGTTAATACCAATGCTGGCGGAAGACCTTTCGTATCTCCGAACATTGGAGACACATCTGGATTTGTTCCAAGTTTGAAGAACTGCTCTGCCAACTCTCGGTCCACTGGTTTATCCCGTTTTCTTTCATTTAAGTGGTACAACCACTCGGAGTACTGCTTTTGCTCGGAAAGCTCACTAAAAAATATTATTGAATTTTTATTCGAAAATTCTTGTTTCTTACGGTAGCACATGCTGTGAATTCATAACCTTCTTAATGTTACTTTTAGTTGCATCCATTCCCAAATACAAAAGCATCCACCTTGCCATATGTTTTGGGTTCAAGAGAGCTGTTCCCGCATAGGACTTCCAATAATCCTGGTATGACGGACWTGTGAAATTGAAAACATGTGTGACCGGATAGATCAGTATCTGACCCCTAAGAACGTCCCGGTTTTCTCGATGTAATCGTTGACACACAACTGCCGCCAGGTTTCCGCCAGCACTATCTCCAGAAATCAAAACTTTCTTTTTGTTGAACGGGAGGTCCGGCAATCTAAATAGATGAAATTATAATTCTTTAGATAATTGAATGGTGAGATACCCATTTTCACAGAGTTCCGATACAACTGCATAACAATCGTTGAGTCCAGCAGGGAATGGGTGTTCTGGAGCAAGACGATAGTCAATGGAGACTCCGTGGCAACCGATTCTGCGGCAAAGTTGATACATTATTCCGTCATAGTATCCTGTAAAGCTGTCATTGTGGTCAGCAGTTTTTTAATTCATGTAGAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATTTGCTGAATTTTTCTAATATATCGTCTAAATTACATTCTAAATTGTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>498 486 16</canonical_bands>
                <polymorphic_bands>514 486</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>498 486 16</canonical_bands>
                <polymorphic_bands>514 486</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>482 362 140 16</canonical_bands>
                <polymorphic_bands>482 362 156</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>379 359 140 106 16</canonical_bands>
                <polymorphic_bands>379 359 156 106</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTACTTTTAGTTGCATCCATTC</pcr_primer_p1>
		<pcr_primer_p2>GAAAGTTTTGATTTCTGGAGATAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTACTTTTAGTTGCATCCATTCCCAAATACAAAAGCATCCACCTTGCCATATGTTTTGGGTTCAAGAGAGCTGTTCCCGCATAGGACTTCCAATAATCCTGGTATGACGGACATGTGAAATTGAAAACATGTGTGACCGGATAGATCAGTATCTGACCCCTAAGAACGTCCCGGTTTTCTCGATGTAATCGTTGACACACAACTGCCGCCAGGTTTCCGCCAGCACTATCTCCAGAAATCAAAACTTTC</canonical_amplicon>
		<polymorphic_amplicon>GTTACTTTTAGTTGCATCCATTCCCAAATACAAAAGCATCCACCTTGCCATATGTTTTGGGTTCAAGAGAGCTGTTCCCGCATAGGACTTCCAATAATCCTGGTATGACGGACWTGTGAAATTGAAAACATGTGTGACCGGATAGATCAGTATCTGACCCCTAAGAACGTCCCGGTTTTCTCGATGTAATCGTTGACACACAACTGCCGCCAGGTTTCCGCCAGCACTATCTCCAGAAATCAAAACTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6001</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>308214</contig_pos>
        <strand>+</strand>
        <context>AGAACGTCCC[G/T]GTTTTCTCGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAAACATGTGTGACCGGATAGATCAGTATCTGACCCCTAAGAACGTCCC</left_flank>
        <right_flank>GTTTTCTCGATGTAATCGTTGACACACAACTGCCGCCAGGTTTCCGCCAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCTGAAATTGTGAAATTTTAAAAGTAGTCTTCAAAAAGGTTGACTCACTGAAGAATGTCGTAACCAGCAGTTAATACCAATGCTGGCGGAAGACCTTTCGTATCTCCGAACATTGGAGACACATCTGGATTTGTTCCAAGTTTGAAGAACTGCTCTGCCAACTCTCGGTCCACTGGTTTATCCCGTTTTCTTTCATTTAAGTGGTACAACCACTCGGAGTACTGCTTTTGCTCGGAAAGCTCACTAAAAAATATTATTGAATTTTTATTCGAAAATTCTTGTTTCTTACGGTAGCACATGCTGTGAATTCATAACCTTCTTAATGTTACTTTTAGTTGCATCCATTCCCAAATACAAAAGCATCCACCTTGCCATATGTTTTGGGTTCAAGAGAGCTGTTCCCGCATAGGACTTCCAATAATCCTGGTATGACGGACATGTGAAATTGAAAACATGTGTGACCGGATAGATCAGTATCTGACCCCTAAGAACGTCCCGGTTTTCTCGATGTAATCGTTGACACACAACTGCCGCCAGGTTTCCGCCAGCACTATCTCCAGAAATCAAAACTTTCTTTTTGTTGAACGGGAGGTCCGGCAATCTAAATAGATGAAATTATAATTCTTTAGATAATTGAATGGTGAGATACCCATTTTCACAGAGTTCCGATACAACTGCATAACAATCGTTGAGTCCAGCAGGGAATGGGTGTTCTGGAGCAAGACGATAGTCAATGGAGACTCCGTGGCAACCGATTCTGCGGCAAAGTTGATACATTATTCCGTCATAGTATCCTGTAAAGCTGTCATTGTGGTCAGCAGTTTTTTAATTCATGTAGAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATTTGCTGAATTTTTCTAATATATCGTCTAAATTACATTCTAAATTGTCTATTTCTGTGAAACCTGTATTATAAAGGCAGACCATTATACATTTCCGCTGGACCCCGTACT</canonical>
            <polymorphic>TCTCTGAAATTGTGAAATTTTAAAAGTAGTCTTCAAAAAGGTTGACTCACTGAAGAATGTCGTAACCAGCAGTTAATACCAATGCTGGCGGAAGACCTTTCGTATCTCCGAACATTGGAGACACATCTGGATTTGTTCCAAGTTTGAAGAACTGCTCTGCCAACTCTCGGTCCACTGGTTTATCCCGTTTTCTTTCATTTAAGTGGTACAACCACTCGGAGTACTGCTTTTGCTCGGAAAGCTCACTAAAAAATATTATTGAATTTTTATTCGAAAATTCTTGTTTCTTACGGTAGCACATGCTGTGAATTCATAACCTTCTTAATGTTACTTTTAGTTGCATCCATTCCCAAATACAAAAGCATCCACCTTGCCATATGTTTTGGGTTCAAGAGAGCTGTTCCCGCATAGGACTTCCAATAATCCTGGTATGACGGACATGTGAAATTGAAAACATGTGTGACCGGATAGATCAGTATCTGACCCCTAAGAACGTCCCKGTTTTCTCGATGTAATCGTTGACACACAACTGCCGCCAGGTTTCCGCCAGCACTATCTCCAGAAATCAAAACTTTCTTTTTGTTGAACGGGAGGTCCGGCAATCTAAATAGATGAAATTATAATTCTTTAGATAATTGAATGGTGAGATACCCATTTTCACAGAGTTCCGATACAACTGCATAACAATCGTTGAGTCCAGCAGGGAATGGGTGTTCTGGAGCAAGACGATAGTCAATGGAGACTCCGTGGCAACCGATTCTGCGGCAAAGTTGATACATTATTCCGTCATAGTATCCTGTAAAGCTGTCATTGTGGTCAGCAGTTTTTTAATTCATGTAGAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATTTGCTGAATTTTTCTAATATATCGTCTAAATTACATTCTAAATTGTCTATTTCTGTGAAACCTGTATTATAAAGGCAGACCATTATACATTTCCGCTGGACCCCGTACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>463 426 72 39</canonical_bands>
                <polymorphic_bands>463 426 111</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>464 404 98 34</canonical_bands>
                <polymorphic_bands>464 404 132</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTACTTTTAGTTGCATCCATTC</pcr_primer_p1>
		<pcr_primer_p2>GAAAGTTTTGATTTCTGGAGATAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTACTTTTAGTTGCATCCATTCCCAAATACAAAAGCATCCACCTTGCCATATGTTTTGGGTTCAAGAGAGCTGTTCCCGCATAGGACTTCCAATAATCCTGGTATGACGGACATGTGAAATTGAAAACATGTGTGACCGGATAGATCAGTATCTGACCCCTAAGAACGTCCCGGTTTTCTCGATGTAATCGTTGACACACAACTGCCGCCAGGTTTCCGCCAGCACTATCTCCAGAAATCAAAACTTTC</canonical_amplicon>
		<polymorphic_amplicon>GTTACTTTTAGTTGCATCCATTCCCAAATACAAAAGCATCCACCTTGCCATATGTTTTGGGTTCAAGAGAGCTGTTCCCGCATAGGACTTCCAATAATCCTGGTATGACGGACATGTGAAATTGAAAACATGTGTGACCGGATAGATCAGTATCTGACCCCTAAGAACGTCCCKGTTTTCTCGATGTAATCGTTGACACACAACTGCCGCCAGGTTTCCGCCAGCACTATCTCCAGAAATCAAAACTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6002</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>308344</contig_pos>
        <strand>+</strand>
        <context>ATAATTCTTT[A/T]GATAATTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGTTGAACGGGAGGTCCGGCAATCTAAATAGATGAAATTATAATTCTTT</left_flank>
        <right_flank>GATAATTGAATGGTGAGATACCCATTTTCACAGAGTTCCGATACAACTGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGTTCCAAGTTTGAAGAACTGCTCTGCCAACTCTCGGTCCACTGGTTTATCCCGTTTTCTTTCATTTAAGTGGTACAACCACTCGGAGTACTGCTTTTGCTCGGAAAGCTCACTAAAAAATATTATTGAATTTTTATTCGAAAATTCTTGTTTCTTACGGTAGCACATGCTGTGAATTCATAACCTTCTTAATGTTACTTTTAGTTGCATCCATTCCCAAATACAAAAGCATCCACCTTGCCATATGTTTTGGGTTCAAGAGAGCTGTTCCCGCATAGGACTTCCAATAATCCTGGTATGACGGACATGTGAAATTGAAAACATGTGTGACCGGATAGATCAGTATCTGACCCCTAAGAACGTCCCGGTTTTCTCGATGTAATCGTTGACACACAACTGCCGCCAGGTTTCCGCCAGCACTATCTCCAGAAATCAAAACTTTCTTTTTGTTGAACGGGAGGTCCGGCAATCTAAATAGATGAAATTATAATTCTTTAGATAATTGAATGGTGAGATACCCATTTTCACAGAGTTCCGATACAACTGCATAACAATCGTTGAGTCCAGCAGGGAATGGGTGTTCTGGAGCAAGACGATAGTCAATGGAGACTCCGTGGCAACCGATTCTGCGGCAAAGTTGATACATTATTCCGTCATAGTATCCTGTAAAGCTGTCATTGTGGTCAGCAGTTTTTTAATTCATGTAGAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATTTGCTGAATTTTTCTAATATATCGTCTAAATTACATTCTAAATTGTCTATTTCTGTGAAACCTGTATTATAAAGGCAGACCATTATACATTTCCGCTGGACCCCGTACTTCCAAAGAGCGCTTCTAGTACAAGGGTTTTCCGATCGGGAGGAGTTTTTTCAATTTTCCCGTTGCCCTAAAGTTTTTATTGAAATTTCGGCAGAATATAATTCCCGGAATAATATTCACTGCGAATCAAC</canonical>
            <polymorphic>ATTTGTTCCAAGTTTGAAGAACTGCTCTGCCAACTCTCGGTCCACTGGTTTATCCCGTTTTCTTTCATTTAAGTGGTACAACCACTCGGAGTACTGCTTTTGCTCGGAAAGCTCACTAAAAAATATTATTGAATTTTTATTCGAAAATTCTTGTTTCTTACGGTAGCACATGCTGTGAATTCATAACCTTCTTAATGTTACTTTTAGTTGCATCCATTCCCAAATACAAAAGCATCCACCTTGCCATATGTTTTGGGTTCAAGAGAGCTGTTCCCGCATAGGACTTCCAATAATCCTGGTATGACGGACATGTGAAATTGAAAACATGTGTGACCGGATAGATCAGTATCTGACCCCTAAGAACGTCCCGGTTTTCTCGATGTAATCGTTGACACACAACTGCCGCCAGGTTTCCGCCAGCACTATCTCCAGAAATCAAAACTTTCTTTTTGTTGAACGGGAGGTCCGGCAATCTAAATAGATGAAATTATAATTCTTTWGATAATTGAATGGTGAGATACCCATTTTCACAGAGTTCCGATACAACTGCATAACAATCGTTGAGTCCAGCAGGGAATGGGTGTTCTGGAGCAAGACGATAGTCAATGGAGACTCCGTGGCAACCGATTCTGCGGCAAAGTTGATACATTATTCCGTCATAGTATCCTGTAAAGCTGTCATTGTGGTCAGCAGTTTTTTAATTCATGTAGAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATTTGCTGAATTTTTCTAATATATCGTCTAAATTACATTCTAAATTGTCTATTTCTGTGAAACCTGTATTATAAAGGCAGACCATTATACATTTCCGCTGGACCCCGTACTTCCAAAGAGCGCTTCTAGTACAAGGGTTTTCCGATCGGGAGGAGTTTTTTCAATTTTCCCGTTGCCCTAAAGTTTTTATTGAAATTTCGGCAGAATATAATTCCCGGAATAATATTCACTGCGAATCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTATCTCCAGAAATCAAAACT</pcr_primer_p1>
		<pcr_primer_p2>CAGGATACTATGACGGAATAATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CACTATCTCCAGAAATCAAAACTTTCTTTTTGTTGAACGGGAGGTCCGGCAATCTAAATAGATGAAATTATAATTCTTTAGATAATTGAATGGTGAGATACCCATTTTCACAGAGTTCCGATACAACTGCATAACAATCGTTGAGTCCAGCAGGGAATGGGTGTTCTGGAGCAAGACGATAGTCAATGGAGACTCCGTGGCAACCGATTCTGCGGCAAAGTTGATACATTATTCCGTCATAGTATCCTG</canonical_amplicon>
		<polymorphic_amplicon>CACTATCTCCAGAAATCAAAACTTTCTTTTTGTTGAACGGGAGGTCCGGCAATCTAAATAGATGAAATTATAATTCTTTWGATAATTGAATGGTGAGATACCCATTTTCACAGAGTTCCGATACAACTGCATAACAATCGTTGAGTCCAGCAGGGAATGGGTGTTCTGGAGCAAGACGATAGTCAATGGAGACTCCGTGGCAACCGATTCTGCGGCAAAGTTGATACATTATTCCGTCATAGTATCCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6003</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>308526</contig_pos>
        <strand>+</strand>
        <context>AAGCTGTCAT[A/T]GTGGTCAGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCGGCAAAGTTGATACATTATTCCGTCATAGTATCCTGTAAAGCTGTCAT</left_flank>
        <right_flank>GTGGTCAGCAGTTTTTTAATTCATGTAGAGTTCAAATCGCCTGAATTTTC</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAACCTTCTTAATGTTACTTTTAGTTGCATCCATTCCCAAATACAAAAGCATCCACCTTGCCATATGTTTTGGGTTCAAGAGAGCTGTTCCCGCATAGGACTTCCAATAATCCTGGTATGACGGACATGTGAAATTGAAAACATGTGTGACCGGATAGATCAGTATCTGACCCCTAAGAACGTCCCGGTTTTCTCGATGTAATCGTTGACACACAACTGCCGCCAGGTTTCCGCCAGCACTATCTCCAGAAATCAAAACTTTCTTTTTGTTGAACGGGAGGTCCGGCAATCTAAATAGATGAAATTATAATTCTTTAGATAATTGAATGGTGAGATACCCATTTTCACAGAGTTCCGATACAACTGCATAACAATCGTTGAGTCCAGCAGGGAATGGGTGTTCTGGAGCAAGACGATAGTCAATGGAGACTCCGTGGCAACCGATTCTGCGGCAAAGTTGATACATTATTCCGTCATAGTATCCTGTAAAGCTGTCATTGTGGTCAGCAGTTTTTTAATTCATGTAGAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATTTGCTGAATTTTTCTAATATATCGTCTAAATTACATTCTAAATTGTCTATTTCTGTGAAACCTGTATTATAAAGGCAGACCATTATACATTTCCGCTGGACCCCGTACTTCCAAAGAGCGCTTCTAGTACAAGGGTTTTCCGATCGGGAGGAGTTTTTTCAATTTTCCCGTTGCCCTAAAGTTTTTATTGAAATTTCGGCAGAATATAATTCCCGGAATAATATTCACTGCGAATCAACGAAAATTCTTGATTTCAAACAACGAATTTCAAAGGGAGCTCTTCTATTCTTTGAACCTCTCTTGGAATGTCCTTCTATTAGAGGGTCCAGTAGTACTCACTTGCTTCACCAACACACCATCCACCTCCATGAATGAAAATGAGAAGACCATCGTTTTTCGATTCCTCGACTTTGTAAGTAAT</canonical>
            <polymorphic>ATAACCTTCTTAATGTTACTTTTAGTTGCATCCATTCCCAAATACAAAAGCATCCACCTTGCCATATGTTTTGGGTTCAAGAGAGCTGTTCCCGCATAGGACTTCCAATAATCCTGGTATGACGGACATGTGAAATTGAAAACATGTGTGACCGGATAGATCAGTATCTGACCCCTAAGAACGTCCCGGTTTTCTCGATGTAATCGTTGACACACAACTGCCGCCAGGTTTCCGCCAGCACTATCTCCAGAAATCAAAACTTTCTTTTTGTTGAACGGGAGGTCCGGCAATCTAAATAGATGAAATTATAATTCTTTAGATAATTGAATGGTGAGATACCCATTTTCACAGAGTTCCGATACAACTGCATAACAATCGTTGAGTCCAGCAGGGAATGGGTGTTCTGGAGCAAGACGATAGTCAATGGAGACTCCGTGGCAACCGATTCTGCGGCAAAGTTGATACATTATTCCGTCATAGTATCCTGTAAAGCTGTCATWGTGGTCAGCAGTTTTTTAATTCATGTAGAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATTTGCTGAATTTTTCTAATATATCGTCTAAATTACATTCTAAATTGTCTATTTCTGTGAAACCTGTATTATAAAGGCAGACCATTATACATTTCCGCTGGACCCCGTACTTCCAAAGAGCGCTTCTAGTACAAGGGTTTTCCGATCGGGAGGAGTTTTTTCAATTTTCCCGTTGCCCTAAAGTTTTTATTGAAATTTCGGCAGAATATAATTCCCGGAATAATATTCACTGCGAATCAACGAAAATTCTTGATTTCAAACAACGAATTTCAAAGGGAGCTCTTCTATTCTTTGAACCTCTCTTGGAATGTCCTTCTATTAGAGGGTCCAGTAGTACTCACTTGCTTCACCAACACACCATCCACCTCCATGAATGAAAATGAGAAGACCATCGTTTTTCGATTCCTCGACTTTGTAAGTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGACGATAGTCAATGGAGACT</pcr_primer_p1>
		<pcr_primer_p2>CTTTATAATACAGGTTTCACAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAGACGATAGTCAATGGAGACTCCGTGGCAACCGATTCTGCGGCAAAGTTGATACATTATTCCGTCATAGTATCCTGTAAAGCTGTCATTGTGGTCAGCAGTTTTTTAATTCATGTAGAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATTTGCTGAATTTTTCTAATATATCGTCTAAATTACATTCTAAATTGTCTATTTCTGTGAAACCTGTATTATAAAG</canonical_amplicon>
		<polymorphic_amplicon>AAGACGATAGTCAATGGAGACTCCGTGGCAACCGATTCTGCGGCAAAGTTGATACATTATTCCGTCATAGTATCCTGTAAAGCTGTCATWGTGGTCAGCAGTTTTTTAATTCATGTAGAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATTTGCTGAATTTTTCTAATATATCGTCTAAATTACATTCTAAATTGTCTATTTCTGTGAAACCTGTATTATAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6004</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>308628</contig_pos>
        <strand>+</strand>
        <context>TCTAATATAT[C/T]GTCTAAATTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGATCTTATTTTATAAAATACGTTTATTTGCTGAATTTTTCTAATATAT</left_flank>
        <right_flank>GTCTAAATTACATTCTAAATTGTCTATTTCTGTGAAACCTGTATTATAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCAATAATCCTGGTATGACGGACATGTGAAATTGAAAACATGTGTGACCGGATAGATCAGTATCTGACCCCTAAGAACGTCCCGGTTTTCTCGATGTAATCGTTGACACACAACTGCCGCCAGGTTTCCGCCAGCACTATCTCCAGAAATCAAAACTTTCTTTTTGTTGAACGGGAGGTCCGGCAATCTAAATAGATGAAATTATAATTCTTTAGATAATTGAATGGTGAGATACCCATTTTCACAGAGTTCCGATACAACTGCATAACAATCGTTGAGTCCAGCAGGGAATGGGTGTTCTGGAGCAAGACGATAGTCAATGGAGACTCCGTGGCAACCGATTCTGCGGCAAAGTTGATACATTATTCCGTCATAGTATCCTGTAAAGCTGTCATTGTGGTCAGCAGTTTTTTAATTCATGTAGAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATTTGCTGAATTTTTCTAATATATCGTCTAAATTACATTCTAAATTGTCTATTTCTGTGAAACCTGTATTATAAAGGCAGACCATTATACATTTCCGCTGGACCCCGTACTTCCAAAGAGCGCTTCTAGTACAAGGGTTTTCCGATCGGGAGGAGTTTTTTCAATTTTCCCGTTGCCCTAAAGTTTTTATTGAAATTTCGGCAGAATATAATTCCCGGAATAATATTCACTGCGAATCAACGAAAATTCTTGATTTCAAACAACGAATTTCAAAGGGAGCTCTTCTATTCTTTGAACCTCTCTTGGAATGTCCTTCTATTAGAGGGTCCAGTAGTACTCACTTGCTTCACCAACACACCATCCACCTCCATGAATGAAAATGAGAAGACCATCGTTTTTCGATTCCTCGACTTTGTAAGTAATGCAACTAACTCCTTGGATTCTGGTTCGTTTTTTCTGAAAAAAAATTTTTGAGAGATTATTATTCTTCACTATATCCTCACGGTCACCCCTTTTGGCGGTCCC</canonical>
            <polymorphic>TTCCAATAATCCTGGTATGACGGACATGTGAAATTGAAAACATGTGTGACCGGATAGATCAGTATCTGACCCCTAAGAACGTCCCGGTTTTCTCGATGTAATCGTTGACACACAACTGCCGCCAGGTTTCCGCCAGCACTATCTCCAGAAATCAAAACTTTCTTTTTGTTGAACGGGAGGTCCGGCAATCTAAATAGATGAAATTATAATTCTTTAGATAATTGAATGGTGAGATACCCATTTTCACAGAGTTCCGATACAACTGCATAACAATCGTTGAGTCCAGCAGGGAATGGGTGTTCTGGAGCAAGACGATAGTCAATGGAGACTCCGTGGCAACCGATTCTGCGGCAAAGTTGATACATTATTCCGTCATAGTATCCTGTAAAGCTGTCATTGTGGTCAGCAGTTTTTTAATTCATGTAGAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATTTGCTGAATTTTTCTAATATATYGTCTAAATTACATTCTAAATTGTCTATTTCTGTGAAACCTGTATTATAAAGGCAGACCATTATACATTTCCGCTGGACCCCGTACTTCCAAAGAGCGCTTCTAGTACAAGGGTTTTCCGATCGGGAGGAGTTTTTTCAATTTTCCCGTTGCCCTAAAGTTTTTATTGAAATTTCGGCAGAATATAATTCCCGGAATAATATTCACTGCGAATCAACGAAAATTCTTGATTTCAAACAACGAATTTCAAAGGGAGCTCTTCTATTCTTTGAACCTCTCTTGGAATGTCCTTCTATTAGAGGGTCCAGTAGTACTCACTTGCTTCACCAACACACCATCCACCTCCATGAATGAAAATGAGAAGACCATCGTTTTTCGATTCCTCGACTTTGTAAGTAATGCAACTAACTCCTTGGATTCTGGTTCGTTTTTTCTGAAAAAAAATTTTTGAGAGATTATTATTCTTCACTATATCCTCACGGTCACCCCTTTTGGCGGTCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATAGTATCCTGTAAAGCTGTCAT</pcr_primer_p1>
		<pcr_primer_p2>GATCGGAAAACCCTTGTACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATAGTATCCTGTAAAGCTGTCATTGTGGTCAGCAGTTTTTTAATTCATGTAGAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATTTGCTGAATTTTTCTAATATATCGTCTAAATTACATTCTAAATTGTCTATTTCTGTGAAACCTGTATTATAAAGGCAGACCATTATACATTTCCGCTGGACCCCGTACTTCCAAAGAGCGCTTCTAGTACAAGGGTTTTCCGATC</canonical_amplicon>
		<polymorphic_amplicon>CATAGTATCCTGTAAAGCTGTCATTGTGGTCAGCAGTTTTTTAATTCATGTAGAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATTTGCTGAATTTTTCTAATATATYGTCTAAATTACATTCTAAATTGTCTATTTCTGTGAAACCTGTATTATAAAGGCAGACCATTATACATTTCCGCTGGACCCCGTACTTCCAAAGAGCGCTTCTAGTACAAGGGTTTTCCGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6005</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>310360</contig_pos>
        <strand>+</strand>
        <context>ACGCTGTCAC[A/C]TCTTCCTCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGTCAC</left_flank>
        <right_flank>TCTTCCTCTTCTCACCAAAATGTTGCTTTCGAAATAGTTGACCTACTTTG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGGAGTTGTTCAAAAATTCTGTAAAAGGAAAGTTTTTAACCTAGATCTCATTGATCGTATTATAGAATACTTAGGTCCACAACAAAAGTTTACCACAGTATCTTTATAAGGTTTTTAGTGGAGCAAAATTAAGAGAAATCTAGGTTTGTTCAGAAAGAATTGTATTTGTTTTTTTTTGCTGAAAAAGATAACTCTGAATCTTCAGATTGTTTCTTGAAATATTAAAAAAAAAAACCTAGTTCATCACCTGCAATAAGAAGAAAAATGAAGAAATGTGGGATTGTAGGGAATGGGAACACAAACGATTACATCTTCCATGACATCTACGAACTGCATCGGTTTTATCCGATCGGTTTCATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGAGAGACAAGGACAGAGTGACACCTCTTTTTTCCCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGTCACATCTTCCTCTTCTCACCAAAATGTTGCTTTCGAAATAGTTGACCTACTTTGCACCTCACAGAGAAATGAAGGTGATTTTAAATCCGAAGTTTAGTTCAAATAGAACAAAAGTAGAGATGAAAATTGTTTGAATGGGTGAGAGAGGCAAAGAAATAACACGAAATGGAAAGGTGACAAAAAGATTGGGGGCAAAGTGGCTAAATCATTTGGAAGAAGAGGTGTGGAAAAGATCACCGTGTCAGTCATCTTGGTTATCTTTCAAAATGAGTGTATATGACATTTGGAATGTGATGCACTTTAGGAATTTTTTTCGGCTTAGCTGGTAATATATTAAAATTGAGAAGATCACCTGTTGGGGAAAACTTGACAATAATCCGAGAAACAGCATTCTTCCCAAGAAACAATGAAAAAAGATTAATGAGATAACACGACGTTCCACTAATGGGCAGCAGACTACAGATTGAAACGTTTTCAAACTTGATCGAGATTTAGGATGTGACG</canonical>
            <polymorphic>TTAGGAGTTGTTCAAAAATTCTGTAAAAGGAAAGTTTTTAACCTAGATCTCATTGATCGTATTATAGAATACTTAGGTCCACAACAAAAGTTTACCACAGTATCTTTATAAGGTTTTTAGTGGAGCAAAATTAAGAGAAATCTAGGTTTGTTCAGAAAGAATTGTATTTGTTTTTTTTTGCTGAAAAAGATAACTCTGAATCTTCAGATTGTTTCTTGAAATATTAAAAAAAAAAACCTAGTTCATCACCTGCAATAAGAAGAAAAATGAAGAAATGTGGGATTGTAGGGAATGGGAACACAAACGATTACATCTTCCATGACATCTACGAACTGCATCGGTTTTATCCGATCGGTTTCATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGAGAGACAAGGACAGAGTGACACCTCTTTTTTCCCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGTCACMTCTTCCTCTTCTCACCAAAATGTTGCTTTCGAAATAGTTGACCTACTTTGCACCTCACAGAGAAATGAAGGTGATTTTAAATCCGAAGTTTAGTTCAAATAGAACAAAAGTAGAGATGAAAATTGTTTGAATGGGTGAGAGAGGCAAAGAAATAACACGAAATGGAAAGGTGACAAAAAGATTGGGGGCAAAGTGGCTAAATCATTTGGAAGAAGAGGTGTGGAAAAGATCACCGTGTCAGTCATCTTGGTTATCTTTCAAAATGAGTGTATATGACATTTGGAATGTGATGCACTTTAGGAATTTTTTTCGGCTTAGCTGGTAATATATTAAAATTGAGAAGATCACCTGTTGGGGAAAACTTGACAATAATCCGAGAAACAGCATTCTTCCCAAGAAACAATGAAAAAAGATTAATGAGATAACACGACGTTCCACTAATGGGCAGCAGACTACAGATTGAAACGTTTTCAAACTTGATCGAGATTTAGGATGTGACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTACTTCAATACACAACACTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTTGTCACCTTTCCATTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGTCACATCTTCCTCTTCTCACCAAAATGTTGCTTTCGAAATAGTTGACCTACTTTGCACCTCACAGAGAAATGAAGGTGATTTTAAATCCGAAGTTTAGTTCAAATAGAACAAAAGTAGAGATGAAAATTGTTTGAATGGGTGAGAGAGGCAAAGAAATAACACGAAATGGAAAGGTGACAAAAAG</canonical_amplicon>
		<polymorphic_amplicon>CCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGTCACMTCTTCCTCTTCTCACCAAAATGTTGCTTTCGAAATAGTTGACCTACTTTGCACCTCACAGAGAAATGAAGGTGATTTTAAATCCGAAGTTTAGTTCAAATAGAACAAAAGTAGAGATGAAAATTGTTTGAATGGGTGAGAGAGGCAAAGAAATAACACGAAATGGAAAGGTGACAAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6006</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>310293</contig_pos>
        <strand>+</strand>
        <context>CCTCTTTTTT[C/T]CCTACTTCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATATATTTACAAGCCAGAGAGACAAGGACAGAGTGACACCTCTTTTTT</left_flank>
        <right_flank>CCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCCCATTTTTGTAATGAAAACGTGAAAAAATTGGGTGACTTCAGAAATCGGCTAATAGCTGTAAAATTAGGAGTTGTTCAAAAATTCTGTAAAAGGAAAGTTTTTAACCTAGATCTCATTGATCGTATTATAGAATACTTAGGTCCACAACAAAAGTTTACCACAGTATCTTTATAAGGTTTTTAGTGGAGCAAAATTAAGAGAAATCTAGGTTTGTTCAGAAAGAATTGTATTTGTTTTTTTTTGCTGAAAAAGATAACTCTGAATCTTCAGATTGTTTCTTGAAATATTAAAAAAAAAAACCTAGTTCATCACCTGCAATAAGAAGAAAAATGAAGAAATGTGGGATTGTAGGGAATGGGAACACAAACGATTACATCTTCCATGACATCTACGAACTGCATCGGTTTTATCCGATCGGTTTCATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGAGAGACAAGGACAGAGTGACACCTCTTTTTTCCCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGTCACATCTTCCTCTTCTCACCAAAATGTTGCTTTCGAAATAGTTGACCTACTTTGCACCTCACAGAGAAATGAAGGTGATTTTAAATCCGAAGTTTAGTTCAAATAGAACAAAAGTAGAGATGAAAATTGTTTGAATGGGTGAGAGAGGCAAAGAAATAACACGAAATGGAAAGGTGACAAAAAGATTGGGGGCAAAGTGGCTAAATCATTTGGAAGAAGAGGTGTGGAAAAGATCACCGTGTCAGTCATCTTGGTTATCTTTCAAAATGAGTGTATATGACATTTGGAATGTGATGCACTTTAGGAATTTTTTTCGGCTTAGCTGGTAATATATTAAAATTGAGAAGATCACCTGTTGGGGAAAACTTGACAATAATCCGAGAAACAGCATTCTTCCCAAGAAACAATGAAAAAAGATTAATGAGATAACACGACGT</canonical>
            <polymorphic>GGCCCATTTTTGTAATGAAAACGTGAAAAAATTGGGTGACTTCAGAAATCGGCTAATAGCTGTAAAATTAGGAGTTGTTCAAAAATTCTGTAAAAGGAAAGTTTTTAACCTAGATCTCATTGATCGTATTATAGAATACTTAGGTCCACAACAAAAGTTTACCACAGTATCTTTATAAGGTTTTTAGTGGAGCAAAATTAAGAGAAATCTAGGTTTGTTCAGAAAGAATTGTATTTGTTTTTTTTTGCTGAAAAAGATAACTCTGAATCTTCAGATTGTTTCTTGAAATATTAAAAAAAAAAACCTAGTTCATCACCTGCAATAAGAAGAAAAATGAAGAAATGTGGGATTGTAGGGAATGGGAACACAAACGATTACATCTTCCATGACATCTACGAACTGCATCGGTTTTATCCGATCGGTTTCATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGAGAGACAAGGACAGAGTGACACCTCTTTTTTYCCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGTCACATCTTCCTCTTCTCACCAAAATGTTGCTTTCGAAATAGTTGACCTACTTTGCACCTCACAGAGAAATGAAGGTGATTTTAAATCCGAAGTTTAGTTCAAATAGAACAAAAGTAGAGATGAAAATTGTTTGAATGGGTGAGAGAGGCAAAGAAATAACACGAAATGGAAAGGTGACAAAAAGATTGGGGGCAAAGTGGCTAAATCATTTGGAAGAAGAGGTGTGGAAAAGATCACCGTGTCAGTCATCTTGGTTATCTTTCAAAATGAGTGTATATGACATTTGGAATGTGATGCACTTTAGGAATTTTTTTCGGCTTAGCTGGTAATATATTAAAATTGAGAAGATCACCTGTTGGGGAAAACTTGACAATAATCCGAGAAACAGCATTCTTCCCAAGAAACAATGAAAAAAGATTAATGAGATAACACGACGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGGGAACACAAACGATTA</pcr_primer_p1>
		<pcr_primer_p2>AACTATTTCGAAAGCAACATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATGGGAACACAAACGATTACATCTTCCATGACATCTACGAACTGCATCGGTTTTATCCGATCGGTTTCATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGAGAGACAAGGACAGAGTGACACCTCTTTTTTCCCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGTCACATCTTCCTCTTCTCACCAAAATGTTGCTTTCGAAATAGTT</canonical_amplicon>
		<polymorphic_amplicon>AATGGGAACACAAACGATTACATCTTCCATGACATCTACGAACTGCATCGGTTTTATCCGATCGGTTTCATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGAGAGACAAGGACAGAGTGACACCTCTTTTTTYCCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGTCACATCTTCCTCTTCTCACCAAAATGTTGCTTTCGAAATAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6007</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>310270</contig_pos>
        <strand>+</strand>
        <context>AGARAGWCAR[A/G]GACAGAGTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGAGAGACAA</left_flank>
        <right_flank>GACAGAGTGACACCTCTTTTTTCCCTACTTCAATACACAACACTTTTGCT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCAGGTATTTGCCTATTTTTGGCCCATTTTTGTAATGAAAACGTGAAAAAATTGGGTGACTTCAGAAATCGGCTAATAGCTGTAAAATTAGGAGTTGTTCAAAAATTCTGTAAAAGGAAAGTTTTTAACCTAGATCTCATTGATCGTATTATAGAATACTTAGGTCCACAACAAAAGTTTACCACAGTATCTTTATAAGGTTTTTAGTGGAGCAAAATTAAGAGAAATCTAGGTTTGTTCAGAAAGAATTGTATTTGTTTTTTTTTGCTGAAAAAGATAACTCTGAATCTTCAGATTGTTTCTTGAAATATTAAAAAAAAAAACCTAGTTCATCACCTGCAATAAGAAGAAAAATGAAGAAATGTGGGATTGTAGGGAATGGGAACACAAACGATTACATCTTCCATGACATCTACGAACTGCATCGGTTTTATCCGATCGGTTTCATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGAGAGACAAGGACAGAGTGACACCTCTTTTTTCCCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGTCACATCTTCCTCTTCTCACCAAAATGTTGCTTTCGAAATAGTTGACCTACTTTGCACCTCACAGAGAAATGAAGGTGATTTTAAATCCGAAGTTTAGTTCAAATAGAACAAAAGTAGAGATGAAAATTGTTTGAATGGGTGAGAGAGGCAAAGAAATAACACGAAATGGAAAGGTGACAAAAAGATTGGGGGCAAAGTGGCTAAATCATTTGGAAGAAGAGGTGTGGAAAAGATCACCGTGTCAGTCATCTTGGTTATCTTTCAAAATGAGTGTATATGACATTTGGAATGTGATGCACTTTAGGAATTTTTTTCGGCTTAGCTGGTAATATATTAAAATTGAGAAGATCACCTGTTGGGGAAAACTTGACAATAATCCGAGAAACAGCATTCTTCCCAAGAAACAATGAAAAA</canonical>
            <polymorphic>TTTCCAGGTATTTGCCTATTTTTGGCCCATTTTTGTAATGAAAACGTGAAAAAATTGGGTGACTTCAGAAATCGGCTAATAGCTGTAAAATTAGGAGTTGTTCAAAAATTCTGTAAAAGGAAAGTTTTTAACCTAGATCTCATTGATCGTATTATAGAATACTTAGGTCCACAACAAAAGTTTACCACAGTATCTTTATAAGGTTTTTAGTGGAGCAAAATTAAGAGAAATCTAGGTTTGTTCAGAAAGAATTGTATTTGTTTTTTTTTGCTGAAAAAGATAACTCTGAATCTTCAGATTGTTTCTTGAAATATTAAAAAAAAAAACCTAGTTCATCACCTGCAATAAGAAGAAAAATGAAGAAATGTGGGATTGTAGGGAATGGGAACACAAACGATTACATCTTCCATGACATCTACGAACTGCATCGGTTTTATCCGATCGGTTTCATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGAGAGACAARGACAGAGTGACACCTCTTTTTTCCCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGTCACATCTTCCTCTTCTCACCAAAATGTTGCTTTCGAAATAGTTGACCTACTTTGCACCTCACAGAGAAATGAAGGTGATTTTAAATCCGAAGTTTAGTTCAAATAGAACAAAAGTAGAGATGAAAATTGTTTGAATGGGTGAGAGAGGCAAAGAAATAACACGAAATGGAAAGGTGACAAAAAGATTGGGGGCAAAGTGGCTAAATCATTTGGAAGAAGAGGTGTGGAAAAGATCACCGTGTCAGTCATCTTGGTTATCTTTCAAAATGAGTGTATATGACATTTGGAATGTGATGCACTTTAGGAATTTTTTTCGGCTTAGCTGGTAATATATTAAAATTGAGAAGATCACCTGTTGGGGAAAACTTGACAATAATCCGAGAAACAGCATTCTTCCCAAGAAACAATGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGGGAACACAAACGATTA</pcr_primer_p1>
		<pcr_primer_p2>AACTATTTCGAAAGCAACATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATGGGAACACAAACGATTACATCTTCCATGACATCTACGAACTGCATCGGTTTTATCCGATCGGTTTCATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGAGAGACAAGGACAGAGTGACACCTCTTTTTTCCCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGTCACATCTTCCTCTTCTCACCAAAATGTTGCTTTCGAAATAGTT</canonical_amplicon>
		<polymorphic_amplicon>AATGGGAACACAAACGATTACATCTTCCATGACATCTACGAACTGCATCGGTTTTATCCGATCGGTTTCATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGAGAGACAARGACAGAGTGACACCTCTTTTTTCCCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGTCACATCTTCCTCTTCTCACCAAAATGTTGCTTTCGAAATAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6008</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>310269</contig_pos>
        <strand>+</strand>
        <context>CAGARAGWCA[A/G]RGACAGAGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGAGAGACA</left_flank>
        <right_flank>GGACAGAGTGACACCTCTTTTTTCCCTACTTCAATACACAACACTTTTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCCAGGTATTTGCCTATTTTTGGCCCATTTTTGTAATGAAAACGTGAAAAAATTGGGTGACTTCAGAAATCGGCTAATAGCTGTAAAATTAGGAGTTGTTCAAAAATTCTGTAAAAGGAAAGTTTTTAACCTAGATCTCATTGATCGTATTATAGAATACTTAGGTCCACAACAAAAGTTTACCACAGTATCTTTATAAGGTTTTTAGTGGAGCAAAATTAAGAGAAATCTAGGTTTGTTCAGAAAGAATTGTATTTGTTTTTTTTTGCTGAAAAAGATAACTCTGAATCTTCAGATTGTTTCTTGAAATATTAAAAAAAAAAACCTAGTTCATCACCTGCAATAAGAAGAAAAATGAAGAAATGTGGGATTGTAGGGAATGGGAACACAAACGATTACATCTTCCATGACATCTACGAACTGCATCGGTTTTATCCGATCGGTTTCATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGAGAGACAAGGACAGAGTGACACCTCTTTTTTCCCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGTCACATCTTCCTCTTCTCACCAAAATGTTGCTTTCGAAATAGTTGACCTACTTTGCACCTCACAGAGAAATGAAGGTGATTTTAAATCCGAAGTTTAGTTCAAATAGAACAAAAGTAGAGATGAAAATTGTTTGAATGGGTGAGAGAGGCAAAGAAATAACACGAAATGGAAAGGTGACAAAAAGATTGGGGGCAAAGTGGCTAAATCATTTGGAAGAAGAGGTGTGGAAAAGATCACCGTGTCAGTCATCTTGGTTATCTTTCAAAATGAGTGTATATGACATTTGGAATGTGATGCACTTTAGGAATTTTTTTCGGCTTAGCTGGTAATATATTAAAATTGAGAAGATCACCTGTTGGGGAAAACTTGACAATAATCCGAGAAACAGCATTCTTCCCAAGAAACAATGAAAA</canonical>
            <polymorphic>TTTTCCAGGTATTTGCCTATTTTTGGCCCATTTTTGTAATGAAAACGTGAAAAAATTGGGTGACTTCAGAAATCGGCTAATAGCTGTAAAATTAGGAGTTGTTCAAAAATTCTGTAAAAGGAAAGTTTTTAACCTAGATCTCATTGATCGTATTATAGAATACTTAGGTCCACAACAAAAGTTTACCACAGTATCTTTATAAGGTTTTTAGTGGAGCAAAATTAAGAGAAATCTAGGTTTGTTCAGAAAGAATTGTATTTGTTTTTTTTTGCTGAAAAAGATAACTCTGAATCTTCAGATTGTTTCTTGAAATATTAAAAAAAAAAACCTAGTTCATCACCTGCAATAAGAAGAAAAATGAAGAAATGTGGGATTGTAGGGAATGGGAACACAAACGATTACATCTTCCATGACATCTACGAACTGCATCGGTTTTATCCGATCGGTTTCATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGAGAGACARGGACAGAGTGACACCTCTTTTTTCCCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGTCACATCTTCCTCTTCTCACCAAAATGTTGCTTTCGAAATAGTTGACCTACTTTGCACCTCACAGAGAAATGAAGGTGATTTTAAATCCGAAGTTTAGTTCAAATAGAACAAAAGTAGAGATGAAAATTGTTTGAATGGGTGAGAGAGGCAAAGAAATAACACGAAATGGAAAGGTGACAAAAAGATTGGGGGCAAAGTGGCTAAATCATTTGGAAGAAGAGGTGTGGAAAAGATCACCGTGTCAGTCATCTTGGTTATCTTTCAAAATGAGTGTATATGACATTTGGAATGTGATGCACTTTAGGAATTTTTTTCGGCTTAGCTGGTAATATATTAAAATTGAGAAGATCACCTGTTGGGGAAAACTTGACAATAATCCGAGAAACAGCATTCTTCCCAAGAAACAATGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGGGAACACAAACGATTA</pcr_primer_p1>
		<pcr_primer_p2>AACTATTTCGAAAGCAACATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATGGGAACACAAACGATTACATCTTCCATGACATCTACGAACTGCATCGGTTTTATCCGATCGGTTTCATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGAGAGACAAGGACAGAGTGACACCTCTTTTTTCCCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGTCACATCTTCCTCTTCTCACCAAAATGTTGCTTTCGAAATAGTT</canonical_amplicon>
		<polymorphic_amplicon>AATGGGAACACAAACGATTACATCTTCCATGACATCTACGAACTGCATCGGTTTTATCCGATCGGTTTCATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGAGAGACARGGACAGAGTGACACCTCTTTTTTCCCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGTCACATCTTCCTCTTCTCACCAAAATGTTGCTTTCGAAATAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6009</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>310266</contig_pos>
        <strand>+</strand>
        <context>AGCCAGARAG[A/T]CARRGACAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGAGAG</left_flank>
        <right_flank>CAAGGACAGAGTGACACCTCTTTTTTCCCTACTTCAATACACAACACTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTTTTCCAGGTATTTGCCTATTTTTGGCCCATTTTTGTAATGAAAACGTGAAAAAATTGGGTGACTTCAGAAATCGGCTAATAGCTGTAAAATTAGGAGTTGTTCAAAAATTCTGTAAAAGGAAAGTTTTTAACCTAGATCTCATTGATCGTATTATAGAATACTTAGGTCCACAACAAAAGTTTACCACAGTATCTTTATAAGGTTTTTAGTGGAGCAAAATTAAGAGAAATCTAGGTTTGTTCAGAAAGAATTGTATTTGTTTTTTTTTGCTGAAAAAGATAACTCTGAATCTTCAGATTGTTTCTTGAAATATTAAAAAAAAAAACCTAGTTCATCACCTGCAATAAGAAGAAAAATGAAGAAATGTGGGATTGTAGGGAATGGGAACACAAACGATTACATCTTCCATGACATCTACGAACTGCATCGGTTTTATCCGATCGGTTTCATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGAGAGACAAGGACAGAGTGACACCTCTTTTTTCCCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGTCACATCTTCCTCTTCTCACCAAAATGTTGCTTTCGAAATAGTTGACCTACTTTGCACCTCACAGAGAAATGAAGGTGATTTTAAATCCGAAGTTTAGTTCAAATAGAACAAAAGTAGAGATGAAAATTGTTTGAATGGGTGAGAGAGGCAAAGAAATAACACGAAATGGAAAGGTGACAAAAAGATTGGGGGCAAAGTGGCTAAATCATTTGGAAGAAGAGGTGTGGAAAAGATCACCGTGTCAGTCATCTTGGTTATCTTTCAAAATGAGTGTATATGACATTTGGAATGTGATGCACTTTAGGAATTTTTTTCGGCTTAGCTGGTAATATATTAAAATTGAGAAGATCACCTGTTGGGGAAAACTTGACAATAATCCGAGAAACAGCATTCTTCCCAAGAAACAATGA</canonical>
            <polymorphic>TAGTTTTCCAGGTATTTGCCTATTTTTGGCCCATTTTTGTAATGAAAACGTGAAAAAATTGGGTGACTTCAGAAATCGGCTAATAGCTGTAAAATTAGGAGTTGTTCAAAAATTCTGTAAAAGGAAAGTTTTTAACCTAGATCTCATTGATCGTATTATAGAATACTTAGGTCCACAACAAAAGTTTACCACAGTATCTTTATAAGGTTTTTAGTGGAGCAAAATTAAGAGAAATCTAGGTTTGTTCAGAAAGAATTGTATTTGTTTTTTTTTGCTGAAAAAGATAACTCTGAATCTTCAGATTGTTTCTTGAAATATTAAAAAAAAAAACCTAGTTCATCACCTGCAATAAGAAGAAAAATGAAGAAATGTGGGATTGTAGGGAATGGGAACACAAACGATTACATCTTCCATGACATCTACGAACTGCATCGGTTTTATCCGATCGGTTTCATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGAGAGWCAAGGACAGAGTGACACCTCTTTTTTCCCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGTCACATCTTCCTCTTCTCACCAAAATGTTGCTTTCGAAATAGTTGACCTACTTTGCACCTCACAGAGAAATGAAGGTGATTTTAAATCCGAAGTTTAGTTCAAATAGAACAAAAGTAGAGATGAAAATTGTTTGAATGGGTGAGAGAGGCAAAGAAATAACACGAAATGGAAAGGTGACAAAAAGATTGGGGGCAAAGTGGCTAAATCATTTGGAAGAAGAGGTGTGGAAAAGATCACCGTGTCAGTCATCTTGGTTATCTTTCAAAATGAGTGTATATGACATTTGGAATGTGATGCACTTTAGGAATTTTTTTCGGCTTAGCTGGTAATATATTAAAATTGAGAAGATCACCTGTTGGGGAAAACTTGACAATAATCCGAGAAACAGCATTCTTCCCAAGAAACAATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGGGAACACAAACGATTA</pcr_primer_p1>
		<pcr_primer_p2>AACTATTTCGAAAGCAACATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATGGGAACACAAACGATTACATCTTCCATGACATCTACGAACTGCATCGGTTTTATCCGATCGGTTTCATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGAGAGACAAGGACAGAGTGACACCTCTTTTTTCCCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGTCACATCTTCCTCTTCTCACCAAAATGTTGCTTTCGAAATAGTT</canonical_amplicon>
		<polymorphic_amplicon>AATGGGAACACAAACGATTACATCTTCCATGACATCTACGAACTGCATCGGTTTTATCCGATCGGTTTCATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGAGAGWCAAGGACAGAGTGACACCTCTTTTTTCCCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGTCACATCTTCCTCTTCTCACCAAAATGTTGCTTTCGAAATAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6010</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>310263</contig_pos>
        <strand>+</strand>
        <context>ACAAGCCAGA[A/G]AGWCARRGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGTTTCATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGA</left_flank>
        <right_flank>AGACAAGGACAGAGTGACACCTCTTTTTTCCCTACTTCAATACACAACAC</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTAGTTTTCCAGGTATTTGCCTATTTTTGGCCCATTTTTGTAATGAAAACGTGAAAAAATTGGGTGACTTCAGAAATCGGCTAATAGCTGTAAAATTAGGAGTTGTTCAAAAATTCTGTAAAAGGAAAGTTTTTAACCTAGATCTCATTGATCGTATTATAGAATACTTAGGTCCACAACAAAAGTTTACCACAGTATCTTTATAAGGTTTTTAGTGGAGCAAAATTAAGAGAAATCTAGGTTTGTTCAGAAAGAATTGTATTTGTTTTTTTTTGCTGAAAAAGATAACTCTGAATCTTCAGATTGTTTCTTGAAATATTAAAAAAAAAAACCTAGTTCATCACCTGCAATAAGAAGAAAAATGAAGAAATGTGGGATTGTAGGGAATGGGAACACAAACGATTACATCTTCCATGACATCTACGAACTGCATCGGTTTTATCCGATCGGTTTCATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGAGAGACAAGGACAGAGTGACACCTCTTTTTTCCCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGTCACATCTTCCTCTTCTCACCAAAATGTTGCTTTCGAAATAGTTGACCTACTTTGCACCTCACAGAGAAATGAAGGTGATTTTAAATCCGAAGTTTAGTTCAAATAGAACAAAAGTAGAGATGAAAATTGTTTGAATGGGTGAGAGAGGCAAAGAAATAACACGAAATGGAAAGGTGACAAAAAGATTGGGGGCAAAGTGGCTAAATCATTTGGAAGAAGAGGTGTGGAAAAGATCACCGTGTCAGTCATCTTGGTTATCTTTCAAAATGAGTGTATATGACATTTGGAATGTGATGCACTTTAGGAATTTTTTTCGGCTTAGCTGGTAATATATTAAAATTGAGAAGATCACCTGTTGGGGAAAACTTGACAATAATCCGAGAAACAGCATTCTTCCCAAGAAACAA</canonical>
            <polymorphic>TCCTAGTTTTCCAGGTATTTGCCTATTTTTGGCCCATTTTTGTAATGAAAACGTGAAAAAATTGGGTGACTTCAGAAATCGGCTAATAGCTGTAAAATTAGGAGTTGTTCAAAAATTCTGTAAAAGGAAAGTTTTTAACCTAGATCTCATTGATCGTATTATAGAATACTTAGGTCCACAACAAAAGTTTACCACAGTATCTTTATAAGGTTTTTAGTGGAGCAAAATTAAGAGAAATCTAGGTTTGTTCAGAAAGAATTGTATTTGTTTTTTTTTGCTGAAAAAGATAACTCTGAATCTTCAGATTGTTTCTTGAAATATTAAAAAAAAAAACCTAGTTCATCACCTGCAATAAGAAGAAAAATGAAGAAATGTGGGATTGTAGGGAATGGGAACACAAACGATTACATCTTCCATGACATCTACGAACTGCATCGGTTTTATCCGATCGGTTTCATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGARAGACAAGGACAGAGTGACACCTCTTTTTTCCCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGTCACATCTTCCTCTTCTCACCAAAATGTTGCTTTCGAAATAGTTGACCTACTTTGCACCTCACAGAGAAATGAAGGTGATTTTAAATCCGAAGTTTAGTTCAAATAGAACAAAAGTAGAGATGAAAATTGTTTGAATGGGTGAGAGAGGCAAAGAAATAACACGAAATGGAAAGGTGACAAAAAGATTGGGGGCAAAGTGGCTAAATCATTTGGAAGAAGAGGTGTGGAAAAGATCACCGTGTCAGTCATCTTGGTTATCTTTCAAAATGAGTGTATATGACATTTGGAATGTGATGCACTTTAGGAATTTTTTTCGGCTTAGCTGGTAATATATTAAAATTGAGAAGATCACCTGTTGGGGAAAACTTGACAATAATCCGAGAAACAGCATTCTTCCCAAGAAACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGGGAACACAAACGATTA</pcr_primer_p1>
		<pcr_primer_p2>AACTATTTCGAAAGCAACATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATGGGAACACAAACGATTACATCTTCCATGACATCTACGAACTGCATCGGTTTTATCCGATCGGTTTCATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGAGAGACAAGGACAGAGTGACACCTCTTTTTTCCCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGTCACATCTTCCTCTTCTCACCAAAATGTTGCTTTCGAAATAGTT</canonical_amplicon>
		<polymorphic_amplicon>AATGGGAACACAAACGATTACATCTTCCATGACATCTACGAACTGCATCGGTTTTATCCGATCGGTTTCATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGARAGACAAGGACAGAGTGACACCTCTTTTTTCCCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGTCACATCTTCCTCTTCTCACCAAAATGTTGCTTTCGAAATAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6011</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>309991</contig_pos>
        <strand>+</strand>
        <context>TGGAGCAAAA[C/T]TAAGAGAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAACAAAAGTTTACCACAGTATCTTTATAAGGTTTTTAGTGGAGCAAAA</left_flank>
        <right_flank>TAAGAGAAATCTAGGTTTGTTCAGAAAGAATTGTATTTGTTTTTTTTTGC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGAATGTGTTATCAGGAACAATACAAGGGTAAATATGTAGAGTGATAATAAGTAATGGGGTCTTAAAGGGTTGATAGCACAATATAACGACTTTTTATGACTTGTTTATGTACAATTATGGAATGACTTGTTCAAAATGTCGTTGGCTACATTTTAGACAAGTGGTTTTCACAAAAAAGTTTGTTGTGGAACATCTCAAGAAGTTACAATCGAATTTTTCAAAATTTGAGAAAATTTGAAAACTTTGCATTCACAGATTTTTATGAAAACTCCTAGTTTTCCAGGTATTTGCCTATTTTTGGCCCATTTTTGTAATGAAAACGTGAAAAAATTGGGTGACTTCAGAAATCGGCTAATAGCTGTAAAATTAGGAGTTGTTCAAAAATTCTGTAAAAGGAAAGTTTTTAACCTAGATCTCATTGATCGTATTATAGAATACTTAGGTCCACAACAAAAGTTTACCACAGTATCTTTATAAGGTTTTTAGTGGAGCAAAATTAAGAGAAATCTAGGTTTGTTCAGAAAGAATTGTATTTGTTTTTTTTTGCTGAAAAAGATAACTCTGAATCTTCAGATTGTTTCTTGAAATATTAAAAAAAAAAACCTAGTTCATCACCTGCAATAAGAAGAAAAATGAAGAAATGTGGGATTGTAGGGAATGGGAACACAAACGATTACATCTTCCATGACATCTACGAACTGCATCGGTTTTATCCGATCGGTTTCATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGAGAGACAAGGACAGAGTGACACCTCTTTTTTCCCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGTCACATCTTCCTCTTCTCACCAAAATGTTGCTTTCGAAATAGTTGACCTACTTTGCACCTCACAGAGAAATGAAGGTGATTTTAAATCCGAAGTTTAGTTCAAATAGAACAAAAGTAGAGATGAAAATTGTTTGAA</canonical>
            <polymorphic>TGTGAATGTGTTATCAGGAACAATACAAGGGTAAATATGTAGAGTGATAATAAGTAATGGGGTCTTAAAGGGTTGATAGCACAATATAACGACTTTTTATGACTTGTTTATGTACAATTATGGAATGACTTGTTCAAAATGTCGTTGGCTACATTTTAGACAAGTGGTTTTCACAAAAAAGTTTGTTGTGGAACATCTCAAGAAGTTACAATCGAATTTTTCAAAATTTGAGAAAATTTGAAAACTTTGCATTCACAGATTTTTATGAAAACTCCTAGTTTTCCAGGTATTTGCCTATTTTTGGCCCATTTTTGTAATGAAAACGTGAAAAAATTGGGTGACTTCAGAAATCGGCTAATAGCTGTAAAATTAGGAGTTGTTCAAAAATTCTGTAAAAGGAAAGTTTTTAACCTAGATCTCATTGATCGTATTATAGAATACTTAGGTCCACAACAAAAGTTTACCACAGTATCTTTATAAGGTTTTTAGTGGAGCAAAAYTAAGAGAAATCTAGGTTTGTTCAGAAAGAATTGTATTTGTTTTTTTTTGCTGAAAAAGATAACTCTGAATCTTCAGATTGTTTCTTGAAATATTAAAAAAAAAAACCTAGTTCATCACCTGCAATAAGAAGAAAAATGAAGAAATGTGGGATTGTAGGGAATGGGAACACAAACGATTACATCTTCCATGACATCTACGAACTGCATCGGTTTTATCCGATCGGTTTCATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGAGAGACAAGGACAGAGTGACACCTCTTTTTTCCCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGTCACATCTTCCTCTTCTCACCAAAATGTTGCTTTCGAAATAGTTGACCTACTTTGCACCTCACAGAGAAATGAAGGTGATTTTAAATCCGAAGTTTAGTTCAAATAGAACAAAAGTAGAGATGAAAATTGTTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>353 342 93 93 65 54</canonical_bands>
                <polymorphic_bands>353 342 186 65 54</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>461 115 112 99 97 36 31 18 11 10 10</canonical_bands>
                <polymorphic_bands>461 143 115 99 97 36 18 11 10 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTATAGAATACTTAGGTCCACAACA</pcr_primer_p1>
		<pcr_primer_p2>GTGTTCCCATTCCCTACAAT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATTATAGAATACTTAGGTCCACAACAAAAGTTTACCACAGTATCTTTATAAGGTTTTTAGTGGAGCAAAATTAAGAGAAATCTAGGTTTGTTCAGAAAGAATTGTATTTGTTTTTTTTTGCTGAAAAAGATAACTCTGAATCTTCAGATTGTTTCTTGAAATATTAAAAAAAAAAACCTAGTTCATCACCTGCAATAAGAAGAAAAATGAAGAAATGTGGGATTGTAGGGAATGGGAACAC</canonical_amplicon>
		<polymorphic_amplicon>ATTATAGAATACTTAGGTCCACAACAAAAGTTTACCACAGTATCTTTATAAGGTTTTTAGTGGAGCAAAAYTAAGAGAAATCTAGGTTTGTTCAGAAAGAATTGTATTTGTTTTTTTTTGCTGAAAAAGATAACTCTGAATCTTCAGATTGTTTCTTGAAATATTAAAAAAAAAAACCTAGTTCATCACCTGCAATAAGAAGAAAAATGAAGAAATGTGGGATTGTAGGGAATGGGAACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6012</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>309947</contig_pos>
        <strand></strand>
        <context>GTCCACAACA[A/T]AAGTTTACCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTAACCTAGATCTCATTGATCGTATTATAGAATACTTAGGTCCACAACA</left_flank>
        <right_flank>AAGTTTACCACAGTATCTTTATAAGGTTTTTAGTGGAGCAAAATTAAGAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTCCATGGTAAGACACCAGAAAAAAAGATGGAGTTGTGTGTATGTGAATGTGTTATCAGGAACAATACAAGGGTAAATATGTAGAGTGATAATAAGTAATGGGGTCTTAAAGGGTTGATAGCACAATATAACGACTTTTTATGACTTGTTTATGTACAATTATGGAATGACTTGTTCAAAATGTCGTTGGCTACATTTTAGACAAGTGGTTTTCACAAAAAAGTTTGTTGTGGAACATCTCAAGAAGTTACAATCGAATTTTTCAAAATTTGAGAAAATTTGAAAACTTTGCATTCACAGATTTTTATGAAAACTCCTAGTTTTCCAGGTATTTGCCTATTTTTGGCCCATTTTTGTAATGAAAACGTGAAAAAATTGGGTGACTTCAGAAATCGGCTAATAGCTGTAAAATTAGGAGTTGTTCAAAAATTCTGTAAAAGGAAAGTTTTTAACCTAGATCTCATTGATCGTATTATAGAATACTTAGGTCCACAACAAAAGTTTACCACAGTATCTTTATAAGGTTTTTAGTGGAGCAAAATTAAGAGAAATCTAGGTTTGTTCAGAAAGAATTGTATTTGTTTTTTTTTGCTGAAAAAGATAACTCTGAATCTTCAGATTGTTTCTTGAAATATTAAAAAAAAAAACCTAGTTCATCACCTGCAATAAGAAGAAAAATGAAGAAATGTGGGATTGTAGGGAATGGGAACACAAACGATTACATCTTCCATGACATCTACGAACTGCATCGGTTTTATCCGATCGGTTTCATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGAGAGACAAGGACAGAGTGACACCTCTTTTTTCCCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGTCACATCTTCCTCTTCTCACCAAAATGTTGCTTTCGAAATAGTTGACCTACTTTGCACCTCACAGAGAAATGAAGGTGATTTTAAATCCGAA</canonical>
            <polymorphic>CACTCCATGGTAAGACACCAGAAAAAAAGATGGAGTTGTGTGTATGTGAATGTGTTATCAGGAACAATACAAGGGTAAATATGTAGAGTGATAATAAGTAATGGGGTCTTAAAGGGTTGATAGCACAATATAACGACTTTTTATGACTTGTTTATGTACAATTATGGAATGACTTGTTCAAAATGTCGTTGGCTACATTTTAGACAAGTGGTTTTCACAAAAAAGTTTGTTGTGGAACATCTCAAGAAGTTACAATCGAATTTTTCAAAATTTGAGAAAATTTGAAAACTTTGCATTCACAGATTTTTATGAAAACTCCTAGTTTTCCAGGTATTTGCCTATTTTTGGCCCATTTTTGTAATGAAAACGTGAAAAAATTGGGTGACTTCAGAAATCGGCTAATAGCTGTAAAATTAGGAGTTGTTCAAAAATTCTGTAAAAGGAAAGTTTTTAACCTAGATCTCATTGATCGTATTATAGAATACTTAGGTCCACAACAWAAGTTTACCACAGTATCTTTATAAGGTTTTTAGTGGAGCAAAATTAAGAGAAATCTAGGTTTGTTCAGAAAGAATTGTATTTGTTTTTTTTTGCTGAAAAAGATAACTCTGAATCTTCAGATTGTTTCTTGAAATATTAAAAAAAAAAACCTAGTTCATCACCTGCAATAAGAAGAAAAATGAAGAAATGTGGGATTGTAGGGAATGGGAACACAAACGATTACATCTTCCATGACATCTACGAACTGCATCGGTTTTATCCGATCGGTTTCATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGAGAGACAAGGACAGAGTGACACCTCTTTTTTCCCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGTCACATCTTCCTCTTCTCACCAAAATGTTGCTTTCGAAATAGTTGACCTACTTTGCACCTCACAGAGAAATGAAGGTGATTTTAAATCCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTTACAATCGAATTTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>ACAATTCTTTCTGAACAAACCTA</pcr_primer_p2>
		<pcr_amplicon_size>333</pcr_amplicon_size>
		<canonical_amplicon>GAAGTTACAATCGAATTTTTCAAAATTTGAGAAAATTTGAAAACTTTGCATTCACAGATTTTTATGAAAACTCCTAGTTTTCCAGGTATTTGCCTATTTTTGGCCCATTTTTGTAATGAAAACGTGAAAAAATTGGGTGACTTCAGAAATCGGCTAATAGCTGTAAAATTAGGAGTTGTTCAAAAATTCTGTAAAAGGAAAGTTTTTAACCTAGATCTCATTGATCGTATTATAGAATACTTAGGTCCACAACAAAAGTTTACCACAGTATCTTTATAAGGTTTTTAGTGGAGCAAAATTAAGAGAAATCTAGGTTTGTTCAGAAAGAATTGT</canonical_amplicon>
		<polymorphic_amplicon>GAAGTTACAATCGAATTTTTCAAAATTTGAGAAAATTTGAAAACTTTGCATTCACAGATTTTTATGAAAACTCCTAGTTTTCCAGGTATTTGCCTATTTTTGGCCCATTTTTGTAATGAAAACGTGAAAAAATTGGGTGACTTCAGAAATCGGCTAATAGCTGTAAAATTAGGAGTTGTTCAAAAATTCTGTAAAAGGAAAGTTTTTAACCTAGATCTCATTGATCGTATTATAGAATACTTAGGTCCACAACAWAAGTTTACCACAGTATCTTTATAAGGTTTTTAGTGGAGCAAAATTAAGAGAAATCTAGGTTTGTTCAGAAAGAATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6013</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>330288</contig_pos>
        <strand></strand>
        <context>CAAAAAATCC[G/A]AAAAATCGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GCTCTAAACAAGTTGTGTCTCGAAAACGTAATCGAAAAAGCAAAAAATCC</left_flank>
        <right_flank>AAAAATCGGAAAAGTCCAAATCCAATATTTCTATTTCCGTCATAATAGAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTCAGAAATAGAATAAAAATAGACTTGGTTTGATGATTTCATTGTTTGGAACGATATAACGGTTTTTATGGATTTACGGTATCTAAAAACGTCAAGACGTAAACACAAAACGCCAATACGATTCAAATTCTTGACAAAATATAATTGTAGAGAAAAATTTTTATTACGGTTGTGTCTTGAGGCGCTGTTAAATTTCGGCTTATGTCAGCAACTGTAACTCTTCTCTTAATGTGTTGCTGAAACATTTTACAATTACATATTTTGATTGTAGTGGTTCTTCTAAGAAATTGATCATCATTTTTCTCTTTCTGTCAGCTTTTCAGTCTTTCTGTCAGTTGTTCAAAACTTTGAAATATTTGAAAACCATCAGGAGCGGAGCGACAAACCAATGAGAAACTATTGAAGTGCGCCAAAGGAGCACCAGTCAGTTGTTTGAACAGCCAGAAGTGCTCTAAACAAGTTGTGTCTCGAAAACGTAATCGAAAAAGCAAAAAATCCGAAAAATCGGAAAAGTCCAAATCCAATATTTCTATTTCCGTCATAATAGATTATTGTACTTTTTGAAACTTCAAAGTTTGAACAAAATCCACAAATTTAAAAATGTAAAAGTCCTACTTGAGTAACACCCTTCCAGATTTTAGTAGAAAGTAAAAAGTTTCTTTATCGGAGTTTCCAAAATTGCAATTAACACAATATGGTTAACAGTAAAGCAGATACACTCAAAACATTTGAAAACCAAGAAACATCTGAAGTTTTTATTTTAACAAGCCATGAAAAAATCTTGATTTGTTCAAAAATCTTGATTTGTTTTTATCAAAATCACTTTCTGACCTCCTTGCTTTTTTCCTGTAGTATGGCTTCCTGCAAACTAGACATCCTAACATCCACCTACATTCTCATCAAAGCATTTTGCATCTGTCACAAAAAAATTTTTCTGAAAAAAACTTGCAGTGTATGAAATGCTTCAGCCCGATCTTTGTATTATGTGCTCTTCGTCGT</canonical>
            <polymorphic>AGTCAGAAATAGAATAAAAATAGACTTGGTTTGATGATTTCATTGTTTGGAACGATATAACGGTTTTTATGGATTTACGGTATCTAAAAACGTCAAGACGTAAACACAAAACGCCAATACGATTCAAATTCTTGACAAAATATAATTGTAGAGAAAAATTTTTATTACGGTTGTGTCTTGAGGCGCTGTTAAATTTCGGCTTATGTCAGCAACTGTAACTCTTCTCTTAATGTGTTGCTGAAACATTTTACAATTACATATTTTGATTGTAGTGGTTCTTCTAAGAAATTGATCATCATTTTTCTCTTTCTGTCAGCTTTTCAGTCTTTCTGTCAGTTGTTCAAAACTTTGAAATATTTGAAAACCATCAGGAGCGGAGCGACAAACCAATGAGAAACTATTGAAGTGCGCCAAAGGAGCACCAGTCAGTTGTTTGAACAGCCAGAAGTGCTCTAAACAAGTTGTGTCTCGAAAACGTAATCGAAAAAGCAAAAAATCCRAAAAATCGGAAAAGTCCAAATCCAATATTTCTATTTCCGTCATAATAGATTATTGTACTTTTTGAAACTTCAAAGTTTGAACAAAATCCACAAATTTAAAAATGTAAAAGTCCTACTTGAGTAACACCCTTCCAGATTTTAGTAGAAAGTAAAAAGTTTCTTTATCGGAGTTTCCAAAATTGCAATTAACACAATATGGTTAACAGTAAAGCAGATACACTCAAAACATTTGAAAACCAAGAAACATCTGAAGTTTTTATTTTAACAAGCCATGAAAAAATCTTGATTTGTTCAAAAATCTTGATTTGTTTTTATCAAAATCACTTTCTGACCTCCTTGCTTTTTTCCTGTAGTATGGCTTCCTGCAAACTAGACATCCTAACATCCACCTACATTCTCATCAAAGCATTTTGCATCTGTCACAAAAAAATTTTTCTGAAAAAAACTTGCAGTGTATGAAATGCTTCAGCCCGATCTTTGTATTATGTGCTCTTCGTCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>494 159 108 82 80 63 9 5</canonical_bands>
                <polymorphic_bands>503 159 108 82 80 63 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAACCAATGAGAAACTATTGA</pcr_primer_p1>
		<pcr_primer_p2>GGGTGTTACTCAAGTAGGACTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACAAACCAATGAGAAACTATTGAAGTGCGCCAAAGGAGCACCAGTCAGTTGTTTGAACAGCCAGAAGTGCTCTAAACAAGTTGTGTCTCGAAAACGTAATCGAAAAAGCAAAAAATCCGAAAAATCGGAAAAGTCCAAATCCAATATTTCTATTTCCGTCATAATAGATTATTGTACTTTTTGAAACTTCAAAGTTTGAACAAAATCCACAAATTTAAAAATGTAAAAGTCCTACTTGAGTAACACCC</canonical_amplicon>
		<polymorphic_amplicon>ACAAACCAATGAGAAACTATTGAAGTGCGCCAAAGGAGCACCAGTCAGTTGTTTGAACAGCCAGAAGTGCTCTAAACAAGTTGTGTCTCGAAAACGTAATCGAAAAAGCAAAAAATCCRAAAAATCGGAAAAGTCCAAATCCAATATTTCTATTTCCGTCATAATAGATTATTGTACTTTTTGAAACTTCAAAGTTTGAACAAAATCCACAAATTTAAAAATGTAAAAGTCCTACTTGAGTAACACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6014</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>330480</contig_pos>
        <strand>+</strand>
        <context>GCAATTAACA[C/G]AATATGGTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTAGAAAGTAAAAAGTTTCTTTATCGGAGTTTCCAAAATTGCAATTAACA</left_flank>
        <right_flank>AATATGGTTAACAGTAAAGCAGATACACTCAAAACATTTGAAAACCAAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCGGCTTATGTCAGCAACTGTAACTCTTCTCTTAATGTGTTGCTGAAACATTTTACAATTACATATTTTGATTGTAGTGGTTCTTCTAAGAAATTGATCATCATTTTTCTCTTTCTGTCAGCTTTTCAGTCTTTCTGTCAGTTGTTCAAAACTTTGAAATATTTGAAAACCATCAGGAGCGGAGCGACAAACCAATGAGAAACTATTGAAGTGCGCCAAAGGAGCACCAGTCAGTTGTTTGAACAGCCAGAAGTGCTCTAAACAAGTTGTGTCTCGAAAACGTAATCGAAAAAGCAAAAAATCCGAAAAATCGGAAAAGTCCAAATCCAATATTTCTATTTCCGTCATAATAGATTATTGTACTTTTTGAAACTTCAAAGTTTGAACAAAATCCACAAATTTAAAAATGTAAAAGTCCTACTTGAGTAACACCCTTCCAGATTTTAGTAGAAAGTAAAAAGTTTCTTTATCGGAGTTTCCAAAATTGCAATTAACACAATATGGTTAACAGTAAAGCAGATACACTCAAAACATTTGAAAACCAAGAAACATCTGAAGTTTTTATTTTAACAAGCCATGAAAAAATCTTGATTTGTTCAAAAATCTTGATTTGTTTTTATCAAAATCACTTTCTGACCTCCTTGCTTTTTTCCTGTAGTATGGCTTCCTGCAAACTAGACATCCTAACATCCACCTACATTCTCATCAAAGCATTTTGCATCTGTCACAAAAAAATTTTTCTGAAAAAAACTTGCAGTGTATGAAATGCTTCAGCCCGATCTTTGTATTATGTGCTCTTCGTCGTATGTACATATATACATTTCTAGACGCACGGCCGATATATATTTTATTCCTCGCAGTTGACGGATTATTTAGTAGTTTAGTGCGGGAAGTAAAACATTGAAACGTCAGGATGATTTATTTGAACTCTGGAATTTTCGATGAAGCTGCTGAAAAATTGTAAAGATGAACATTGGGAAAATGTGTGATGCGTAAG</canonical>
            <polymorphic>ATTTCGGCTTATGTCAGCAACTGTAACTCTTCTCTTAATGTGTTGCTGAAACATTTTACAATTACATATTTTGATTGTAGTGGTTCTTCTAAGAAATTGATCATCATTTTTCTCTTTCTGTCAGCTTTTCAGTCTTTCTGTCAGTTGTTCAAAACTTTGAAATATTTGAAAACCATCAGGAGCGGAGCGACAAACCAATGAGAAACTATTGAAGTGCGCCAAAGGAGCACCAGTCAGTTGTTTGAACAGCCAGAAGTGCTCTAAACAAGTTGTGTCTCGAAAACGTAATCGAAAAAGCAAAAAATCCGAAAAATCGGAAAAGTCCAAATCCAATATTTCTATTTCCGTCATAATAGATTATTGTACTTTTTGAAACTTCAAAGTTTGAACAAAATCCACAAATTTAAAAATGTAAAAGTCCTACTTGAGTAACACCCTTCCAGATTTTAGTAGAAAGTAAAAAGTTTCTTTATCGGAGTTTCCAAAATTGCAATTAACASAATATGGTTAACAGTAAAGCAGATACACTCAAAACATTTGAAAACCAAGAAACATCTGAAGTTTTTATTTTAACAAGCCATGAAAAAATCTTGATTTGTTCAAAAATCTTGATTTGTTTTTATCAAAATCACTTTCTGACCTCCTTGCTTTTTTCCTGTAGTATGGCTTCCTGCAAACTAGACATCCTAACATCCACCTACATTCTCATCAAAGCATTTTGCATCTGTCACAAAAAAATTTTTCTGAAAAAAACTTGCAGTGTATGAAATGCTTCAGCCCGATCTTTGTATTATGTGCTCTTCGTCGTATGTACATATATACATTTCTAGACGCACGGCCGATATATATTTTATTCCTCGCAGTTGACGGATTATTTAGTAGTTTAGTGCGGGAAGTAAAACATTGAAACGTCAGGATGATTTATTTGAACTCTGGAATTTTCGATGAAGCTGCTGAAAAATTGTAAAGATGAACATTGGGAAAATGTGTGATGCGTAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>134 124 104 100 65 65 54 42 40 38 36 35 34 32 29 28 16 13 9 2</canonical_bands>
                <polymorphic_bands>134 124 104 100 93 65 54 42 40 38 36 35 34 32 29 16 13 9 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAATATTTCTATTTCCGTCATA</pcr_primer_p1>
		<pcr_primer_p2>GGCTTGTTAAAATAAAAACTTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAATATTTCTATTTCCGTCATAATAGATTATTGTACTTTTTGAAACTTCAAAGTTTGAACAAAATCCACAAATTTAAAAATGTAAAAGTCCTACTTGAGTAACACCCTTCCAGATTTTAGTAGAAAGTAAAAAGTTTCTTTATCGGAGTTTCCAAAATTGCAATTAACACAATATGGTTAACAGTAAAGCAGATACACTCAAAACATTTGAAAACCAAGAAACATCTGAAGTTTTTATTTTAACAAGCC</canonical_amplicon>
		<polymorphic_amplicon>CCAATATTTCTATTTCCGTCATAATAGATTATTGTACTTTTTGAAACTTCAAAGTTTGAACAAAATCCACAAATTTAAAAATGTAAAAGTCCTACTTGAGTAACACCCTTCCAGATTTTAGTAGAAAGTAAAAAGTTTCTTTATCGGAGTTTCCAAAATTGCAATTAACASAATATGGTTAACAGTAAAGCAGATACACTCAAAACATTTGAAAACCAAGAAACATCTGAAGTTTTTATTTTAACAAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6015</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>330652</contig_pos>
        <strand>+</strand>
        <context>TATGGCTTCC[A/T]GCAAACTAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCAAAATCACTTTCTGACCTCCTTGCTTTTTTCCTGTAGTATGGCTTCC</left_flank>
        <right_flank>GCAAACTAGACATCCTAACATCCACCTACATTCTCATCAAAGCATTTTGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCATCAGGAGCGGAGCGACAAACCAATGAGAAACTATTGAAGTGCGCCAAAGGAGCACCAGTCAGTTGTTTGAACAGCCAGAAGTGCTCTAAACAAGTTGTGTCTCGAAAACGTAATCGAAAAAGCAAAAAATCCGAAAAATCGGAAAAGTCCAAATCCAATATTTCTATTTCCGTCATAATAGATTATTGTACTTTTTGAAACTTCAAAGTTTGAACAAAATCCACAAATTTAAAAATGTAAAAGTCCTACTTGAGTAACACCCTTCCAGATTTTAGTAGAAAGTAAAAAGTTTCTTTATCGGAGTTTCCAAAATTGCAATTAACACAATATGGTTAACAGTAAAGCAGATACACTCAAAACATTTGAAAACCAAGAAACATCTGAAGTTTTTATTTTAACAAGCCATGAAAAAATCTTGATTTGTTCAAAAATCTTGATTTGTTTTTATCAAAATCACTTTCTGACCTCCTTGCTTTTTTCCTGTAGTATGGCTTCCTGCAAACTAGACATCCTAACATCCACCTACATTCTCATCAAAGCATTTTGCATCTGTCACAAAAAAATTTTTCTGAAAAAAACTTGCAGTGTATGAAATGCTTCAGCCCGATCTTTGTATTATGTGCTCTTCGTCGTATGTACATATATACATTTCTAGACGCACGGCCGATATATATTTTATTCCTCGCAGTTGACGGATTATTTAGTAGTTTAGTGCGGGAAGTAAAACATTGAAACGTCAGGATGATTTATTTGAACTCTGGAATTTTCGATGAAGCTGCTGAAAAATTGTAAAGATGAACATTGGGAAAATGTGTGATGCGTAAGTAACGGGAGAAGCTGATTCAAATATATTTTGAAAATTAACAATTTTTCAGTTTTGTTATACCGTAAGCATTTTTTTCAGAATACGTACATAACCGTCAACTTTGAGCTGATTAATTTTGGTCCCAGTGAAGTATATCAAAACGTTATATGCTGACAAAATATTTCAAATACC</canonical>
            <polymorphic>CCATCAGGAGCGGAGCGACAAACCAATGAGAAACTATTGAAGTGCGCCAAAGGAGCACCAGTCAGTTGTTTGAACAGCCAGAAGTGCTCTAAACAAGTTGTGTCTCGAAAACGTAATCGAAAAAGCAAAAAATCCGAAAAATCGGAAAAGTCCAAATCCAATATTTCTATTTCCGTCATAATAGATTATTGTACTTTTTGAAACTTCAAAGTTTGAACAAAATCCACAAATTTAAAAATGTAAAAGTCCTACTTGAGTAACACCCTTCCAGATTTTAGTAGAAAGTAAAAAGTTTCTTTATCGGAGTTTCCAAAATTGCAATTAACACAATATGGTTAACAGTAAAGCAGATACACTCAAAACATTTGAAAACCAAGAAACATCTGAAGTTTTTATTTTAACAAGCCATGAAAAAATCTTGATTTGTTCAAAAATCTTGATTTGTTTTTATCAAAATCACTTTCTGACCTCCTTGCTTTTTTCCTGTAGTATGGCTTCCWGCAAACTAGACATCCTAACATCCACCTACATTCTCATCAAAGCATTTTGCATCTGTCACAAAAAAATTTTTCTGAAAAAAACTTGCAGTGTATGAAATGCTTCAGCCCGATCTTTGTATTATGTGCTCTTCGTCGTATGTACATATATACATTTCTAGACGCACGGCCGATATATATTTTATTCCTCGCAGTTGACGGATTATTTAGTAGTTTAGTGCGGGAAGTAAAACATTGAAACGTCAGGATGATTTATTTGAACTCTGGAATTTTCGATGAAGCTGCTGAAAAATTGTAAAGATGAACATTGGGAAAATGTGTGATGCGTAAGTAACGGGAGAAGCTGATTCAAATATATTTTGAAAATTAACAATTTTTCAGTTTTGTTATACCGTAAGCATTTTTTTCAGAATACGTACATAACCGTCAACTTTGAGCTGATTAATTTTGGTCCCAGTGAAGTATATCAAAACGTTATATGCTGACAAAATATTTCAAATACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>415 318 183 48 36</canonical_bands>
                <polymorphic_bands>415 318 231 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTTATTTTAACAAGCCATGA</pcr_primer_p1>
		<pcr_primer_p2>ATACGACGAAGAGCACATAATAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTTTATTTTAACAAGCCATGAAAAAATCTTGATTTGTTCAAAAATCTTGATTTGTTTTTATCAAAATCACTTTCTGACCTCCTTGCTTTTTTCCTGTAGTATGGCTTCCTGCAAACTAGACATCCTAACATCCACCTACATTCTCATCAAAGCATTTTGCATCTGTCACAAAAAAATTTTTCTGAAAAAAACTTGCAGTGTATGAAATGCTTCAGCCCGATCTTTGTATTATGTGCTCTTCGTCGTAT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTTATTTTAACAAGCCATGAAAAAATCTTGATTTGTTCAAAAATCTTGATTTGTTTTTATCAAAATCACTTTCTGACCTCCTTGCTTTTTTCCTGTAGTATGGCTTCCWGCAAACTAGACATCCTAACATCCACCTACATTCTCATCAAAGCATTTTGCATCTGTCACAAAAAAATTTTTCTGAAAAAAACTTGCAGTGTATGAAATGCTTCAGCCCGATCTTTGTATTATGTGCTCTTCGTCGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6016</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>330675</contig_pos>
        <strand>+</strand>
        <context>TCCTAACATC[C/T]ACCYACATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGCTTTTTTCCTGTAGTATGGCTTCCTGCAAACTAGACATCCTAACATC</left_flank>
        <right_flank>ACCTACATTCTCATCAAAGCATTTTGCATCTGTCACAAAAAAATTTTTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATGAGAAACTATTGAAGTGCGCCAAAGGAGCACCAGTCAGTTGTTTGAACAGCCAGAAGTGCTCTAAACAAGTTGTGTCTCGAAAACGTAATCGAAAAAGCAAAAAATCCGAAAAATCGGAAAAGTCCAAATCCAATATTTCTATTTCCGTCATAATAGATTATTGTACTTTTTGAAACTTCAAAGTTTGAACAAAATCCACAAATTTAAAAATGTAAAAGTCCTACTTGAGTAACACCCTTCCAGATTTTAGTAGAAAGTAAAAAGTTTCTTTATCGGAGTTTCCAAAATTGCAATTAACACAATATGGTTAACAGTAAAGCAGATACACTCAAAACATTTGAAAACCAAGAAACATCTGAAGTTTTTATTTTAACAAGCCATGAAAAAATCTTGATTTGTTCAAAAATCTTGATTTGTTTTTATCAAAATCACTTTCTGACCTCCTTGCTTTTTTCCTGTAGTATGGCTTCCTGCAAACTAGACATCCTAACATCCACCTACATTCTCATCAAAGCATTTTGCATCTGTCACAAAAAAATTTTTCTGAAAAAAACTTGCAGTGTATGAAATGCTTCAGCCCGATCTTTGTATTATGTGCTCTTCGTCGTATGTACATATATACATTTCTAGACGCACGGCCGATATATATTTTATTCCTCGCAGTTGACGGATTATTTAGTAGTTTAGTGCGGGAAGTAAAACATTGAAACGTCAGGATGATTTATTTGAACTCTGGAATTTTCGATGAAGCTGCTGAAAAATTGTAAAGATGAACATTGGGAAAATGTGTGATGCGTAAGTAACGGGAGAAGCTGATTCAAATATATTTTGAAAATTAACAATTTTTCAGTTTTGTTATACCGTAAGCATTTTTTTCAGAATACGTACATAACCGTCAACTTTGAGCTGATTAATTTTGGTCCCAGTGAAGTATATCAAAACGTTATATGCTGACAAAATATTTCAAATACCATGTTGATCATGTTATCAGCCGA</canonical>
            <polymorphic>CAATGAGAAACTATTGAAGTGCGCCAAAGGAGCACCAGTCAGTTGTTTGAACAGCCAGAAGTGCTCTAAACAAGTTGTGTCTCGAAAACGTAATCGAAAAAGCAAAAAATCCGAAAAATCGGAAAAGTCCAAATCCAATATTTCTATTTCCGTCATAATAGATTATTGTACTTTTTGAAACTTCAAAGTTTGAACAAAATCCACAAATTTAAAAATGTAAAAGTCCTACTTGAGTAACACCCTTCCAGATTTTAGTAGAAAGTAAAAAGTTTCTTTATCGGAGTTTCCAAAATTGCAATTAACACAATATGGTTAACAGTAAAGCAGATACACTCAAAACATTTGAAAACCAAGAAACATCTGAAGTTTTTATTTTAACAAGCCATGAAAAAATCTTGATTTGTTCAAAAATCTTGATTTGTTTTTATCAAAATCACTTTCTGACCTCCTTGCTTTTTTCCTGTAGTATGGCTTCCTGCAAACTAGACATCCTAACATCYACCTACATTCTCATCAAAGCATTTTGCATCTGTCACAAAAAAATTTTTCTGAAAAAAACTTGCAGTGTATGAAATGCTTCAGCCCGATCTTTGTATTATGTGCTCTTCGTCGTATGTACATATATACATTTCTAGACGCACGGCCGATATATATTTTATTCCTCGCAGTTGACGGATTATTTAGTAGTTTAGTGCGGGAAGTAAAACATTGAAACGTCAGGATGATTTATTTGAACTCTGGAATTTTCGATGAAGCTGCTGAAAAATTGTAAAGATGAACATTGGGAAAATGTGTGATGCGTAAGTAACGGGAGAAGCTGATTCAAATATATTTTGAAAATTAACAATTTTTCAGTTTTGTTATACCGTAAGCATTTTTTTCAGAATACGTACATAACCGTCAACTTTGAGCTGATTAATTTTGGTCCCAGTGAAGTATATCAAAACGTTATATGCTGACAAAATATTTCAAATACCATGTTGATCATGTTATCAGCCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>137 124 104 100 67 65 65 54 38 36 35 34 32 29 28 21 16 13 2</canonical_bands>
                <polymorphic_bands>137 124 104 100 99 67 65 54 38 36 35 32 29 28 21 16 13 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTTATTTTAACAAGCCATGA</pcr_primer_p1>
		<pcr_primer_p2>ATACGACGAAGAGCACATAATAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTTTATTTTAACAAGCCATGAAAAAATCTTGATTTGTTCAAAAATCTTGATTTGTTTTTATCAAAATCACTTTCTGACCTCCTTGCTTTTTTCCTGTAGTATGGCTTCCTGCAAACTAGACATCCTAACATCCACCTACATTCTCATCAAAGCATTTTGCATCTGTCACAAAAAAATTTTTCTGAAAAAAACTTGCAGTGTATGAAATGCTTCAGCCCGATCTTTGTATTATGTGCTCTTCGTCGTAT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTTATTTTAACAAGCCATGAAAAAATCTTGATTTGTTCAAAAATCTTGATTTGTTTTTATCAAAATCACTTTCTGACCTCCTTGCTTTTTTCCTGTAGTATGGCTTCCTGCAAACTAGACATCCTAACATCYACCTACATTCTCATCAAAGCATTTTGCATCTGTCACAAAAAAATTTTTCTGAAAAAAACTTGCAGTGTATGAAATGCTTCAGCCCGATCTTTGTATTATGTGCTCTTCGTCGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6017</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>330679</contig_pos>
        <strand>+</strand>
        <context>AACATCYACC[C/T]ACATTCTCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTCCTGTAGTATGGCTTCCTGCAAACTAGACATCCTAACATCCACC</left_flank>
        <right_flank>ACATTCTCATCAAAGCATTTTGCATCTGTCACAAAAAAATTTTTCTGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAAACTATTGAAGTGCGCCAAAGGAGCACCAGTCAGTTGTTTGAACAGCCAGAAGTGCTCTAAACAAGTTGTGTCTCGAAAACGTAATCGAAAAAGCAAAAAATCCGAAAAATCGGAAAAGTCCAAATCCAATATTTCTATTTCCGTCATAATAGATTATTGTACTTTTTGAAACTTCAAAGTTTGAACAAAATCCACAAATTTAAAAATGTAAAAGTCCTACTTGAGTAACACCCTTCCAGATTTTAGTAGAAAGTAAAAAGTTTCTTTATCGGAGTTTCCAAAATTGCAATTAACACAATATGGTTAACAGTAAAGCAGATACACTCAAAACATTTGAAAACCAAGAAACATCTGAAGTTTTTATTTTAACAAGCCATGAAAAAATCTTGATTTGTTCAAAAATCTTGATTTGTTTTTATCAAAATCACTTTCTGACCTCCTTGCTTTTTTCCTGTAGTATGGCTTCCTGCAAACTAGACATCCTAACATCCACCTACATTCTCATCAAAGCATTTTGCATCTGTCACAAAAAAATTTTTCTGAAAAAAACTTGCAGTGTATGAAATGCTTCAGCCCGATCTTTGTATTATGTGCTCTTCGTCGTATGTACATATATACATTTCTAGACGCACGGCCGATATATATTTTATTCCTCGCAGTTGACGGATTATTTAGTAGTTTAGTGCGGGAAGTAAAACATTGAAACGTCAGGATGATTTATTTGAACTCTGGAATTTTCGATGAAGCTGCTGAAAAATTGTAAAGATGAACATTGGGAAAATGTGTGATGCGTAAGTAACGGGAGAAGCTGATTCAAATATATTTTGAAAATTAACAATTTTTCAGTTTTGTTATACCGTAAGCATTTTTTTCAGAATACGTACATAACCGTCAACTTTGAGCTGATTAATTTTGGTCCCAGTGAAGTATATCAAAACGTTATATGCTGACAAAATATTTCAAATACCATGTTGATCATGTTATCAGCCGATCGT</canonical>
            <polymorphic>GAGAAACTATTGAAGTGCGCCAAAGGAGCACCAGTCAGTTGTTTGAACAGCCAGAAGTGCTCTAAACAAGTTGTGTCTCGAAAACGTAATCGAAAAAGCAAAAAATCCGAAAAATCGGAAAAGTCCAAATCCAATATTTCTATTTCCGTCATAATAGATTATTGTACTTTTTGAAACTTCAAAGTTTGAACAAAATCCACAAATTTAAAAATGTAAAAGTCCTACTTGAGTAACACCCTTCCAGATTTTAGTAGAAAGTAAAAAGTTTCTTTATCGGAGTTTCCAAAATTGCAATTAACACAATATGGTTAACAGTAAAGCAGATACACTCAAAACATTTGAAAACCAAGAAACATCTGAAGTTTTTATTTTAACAAGCCATGAAAAAATCTTGATTTGTTCAAAAATCTTGATTTGTTTTTATCAAAATCACTTTCTGACCTCCTTGCTTTTTTCCTGTAGTATGGCTTCCTGCAAACTAGACATCCTAACATCCACCYACATTCTCATCAAAGCATTTTGCATCTGTCACAAAAAAATTTTTCTGAAAAAAACTTGCAGTGTATGAAATGCTTCAGCCCGATCTTTGTATTATGTGCTCTTCGTCGTATGTACATATATACATTTCTAGACGCACGGCCGATATATATTTTATTCCTCGCAGTTGACGGATTATTTAGTAGTTTAGTGCGGGAAGTAAAACATTGAAACGTCAGGATGATTTATTTGAACTCTGGAATTTTCGATGAAGCTGCTGAAAAATTGTAAAGATGAACATTGGGAAAATGTGTGATGCGTAAGTAACGGGAGAAGCTGATTCAAATATATTTTGAAAATTAACAATTTTTCAGTTTTGTTATACCGTAAGCATTTTTTTCAGAATACGTACATAACCGTCAACTTTGAGCTGATTAATTTTGGTCCCAGTGAAGTATATCAAAACGTTATATGCTGACAAAATATTTCAAATACCATGTTGATCATGTTATCAGCCGATCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTTATTTTAACAAGCCATGA</pcr_primer_p1>
		<pcr_primer_p2>ATACGACGAAGAGCACATAATAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTTTATTTTAACAAGCCATGAAAAAATCTTGATTTGTTCAAAAATCTTGATTTGTTTTTATCAAAATCACTTTCTGACCTCCTTGCTTTTTTCCTGTAGTATGGCTTCCTGCAAACTAGACATCCTAACATCCACCTACATTCTCATCAAAGCATTTTGCATCTGTCACAAAAAAATTTTTCTGAAAAAAACTTGCAGTGTATGAAATGCTTCAGCCCGATCTTTGTATTATGTGCTCTTCGTCGTAT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTTATTTTAACAAGCCATGAAAAAATCTTGATTTGTTCAAAAATCTTGATTTGTTTTTATCAAAATCACTTTCTGACCTCCTTGCTTTTTTCCTGTAGTATGGCTTCCTGCAAACTAGACATCCTAACATCCACCYACATTCTCATCAAAGCATTTTGCATCTGTCACAAAAAAATTTTTCTGAAAAAAACTTGCAGTGTATGAAATGCTTCAGCCCGATCTTTGTATTATGTGCTCTTCGTCGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6018</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>330801</contig_pos>
        <strand>+</strand>
        <context>GTACATATAT[A/G]CATTTYTAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTTCAGCCCGATCTTTGTATTATGTGCTCTTCGTCGTATGTACATATAT</left_flank>
        <right_flank>CATTTCTAGACGCACGGCCGATATATATTTTATTCCTCGCAGTTGACGGA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCAAATCCAATATTTCTATTTCCGTCATAATAGATTATTGTACTTTTTGAAACTTCAAAGTTTGAACAAAATCCACAAATTTAAAAATGTAAAAGTCCTACTTGAGTAACACCCTTCCAGATTTTAGTAGAAAGTAAAAAGTTTCTTTATCGGAGTTTCCAAAATTGCAATTAACACAATATGGTTAACAGTAAAGCAGATACACTCAAAACATTTGAAAACCAAGAAACATCTGAAGTTTTTATTTTAACAAGCCATGAAAAAATCTTGATTTGTTCAAAAATCTTGATTTGTTTTTATCAAAATCACTTTCTGACCTCCTTGCTTTTTTCCTGTAGTATGGCTTCCTGCAAACTAGACATCCTAACATCCACCTACATTCTCATCAAAGCATTTTGCATCTGTCACAAAAAAATTTTTCTGAAAAAAACTTGCAGTGTATGAAATGCTTCAGCCCGATCTTTGTATTATGTGCTCTTCGTCGTATGTACATATATACATTTCTAGACGCACGGCCGATATATATTTTATTCCTCGCAGTTGACGGATTATTTAGTAGTTTAGTGCGGGAAGTAAAACATTGAAACGTCAGGATGATTTATTTGAACTCTGGAATTTTCGATGAAGCTGCTGAAAAATTGTAAAGATGAACATTGGGAAAATGTGTGATGCGTAAGTAACGGGAGAAGCTGATTCAAATATATTTTGAAAATTAACAATTTTTCAGTTTTGTTATACCGTAAGCATTTTTTTCAGAATACGTACATAACCGTCAACTTTGAGCTGATTAATTTTGGTCCCAGTGAAGTATATCAAAACGTTATATGCTGACAAAATATTTCAAATACCATGTTGATCATGTTATCAGCCGATCGTTTTTTTGATATTCCTCGTTCAATTCCTCGTTCAGCTTACCTCATCGAGTTGCCTTAAACAGTATCAGAGAATGCCCCCGGACGGTTTCTATGGATTTATCAAAACGTTACATGCTGACAAAA</canonical>
            <polymorphic>GTCCAAATCCAATATTTCTATTTCCGTCATAATAGATTATTGTACTTTTTGAAACTTCAAAGTTTGAACAAAATCCACAAATTTAAAAATGTAAAAGTCCTACTTGAGTAACACCCTTCCAGATTTTAGTAGAAAGTAAAAAGTTTCTTTATCGGAGTTTCCAAAATTGCAATTAACACAATATGGTTAACAGTAAAGCAGATACACTCAAAACATTTGAAAACCAAGAAACATCTGAAGTTTTTATTTTAACAAGCCATGAAAAAATCTTGATTTGTTCAAAAATCTTGATTTGTTTTTATCAAAATCACTTTCTGACCTCCTTGCTTTTTTCCTGTAGTATGGCTTCCTGCAAACTAGACATCCTAACATCCACCTACATTCTCATCAAAGCATTTTGCATCTGTCACAAAAAAATTTTTCTGAAAAAAACTTGCAGTGTATGAAATGCTTCAGCCCGATCTTTGTATTATGTGCTCTTCGTCGTATGTACATATATRCATTTCTAGACGCACGGCCGATATATATTTTATTCCTCGCAGTTGACGGATTATTTAGTAGTTTAGTGCGGGAAGTAAAACATTGAAACGTCAGGATGATTTATTTGAACTCTGGAATTTTCGATGAAGCTGCTGAAAAATTGTAAAGATGAACATTGGGAAAATGTGTGATGCGTAAGTAACGGGAGAAGCTGATTCAAATATATTTTGAAAATTAACAATTTTTCAGTTTTGTTATACCGTAAGCATTTTTTTCAGAATACGTACATAACCGTCAACTTTGAGCTGATTAATTTTGGTCCCAGTGAAGTATATCAAAACGTTATATGCTGACAAAATATTTCAAATACCATGTTGATCATGTTATCAGCCGATCGTTTTTTTGATATTCCTCGTTCAATTCCTCGTTCAGCTTACCTCATCGAGTTGCCTTAAACAGTATCAGAGAATGCCCCCGGACGGTTTCTATGGATTTATCAAAACGTTACATGCTGACAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGTGTATGAAATGCTTCAG</pcr_primer_p1>
		<pcr_primer_p2>GTTACTTACGCATCACACATTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCAGTGTATGAAATGCTTCAGCCCGATCTTTGTATTATGTGCTCTTCGTCGTATGTACATATATACATTTCTAGACGCACGGCCGATATATATTTTATTCCTCGCAGTTGACGGATTATTTAGTAGTTTAGTGCGGGAAGTAAAACATTGAAACGTCAGGATGATTTATTTGAACTCTGGAATTTTCGATGAAGCTGCTGAAAAATTGTAAAGATGAACATTGGGAAAATGTGTGATGCGTAAGTAAC</canonical_amplicon>
		<polymorphic_amplicon>GCAGTGTATGAAATGCTTCAGCCCGATCTTTGTATTATGTGCTCTTCGTCGTATGTACATATATRCATTTCTAGACGCACGGCCGATATATATTTTATTCCTCGCAGTTGACGGATTATTTAGTAGTTTAGTGCGGGAAGTAAAACATTGAAACGTCAGGATGATTTATTTGAACTCTGGAATTTTCGATGAAGCTGCTGAAAAATTGTAAAGATGAACATTGGGAAAATGTGTGATGCGTAAGTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6019</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>330807</contig_pos>
        <strand>+</strand>
        <context>ATATRCATTT[C/T]TAGACGCACG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCCGATCTTTGTATTATGTGCTCTTCGTCGTATGTACATATATACATTT</left_flank>
        <right_flank>TAGACGCACGGCCGATATATATTTTATTCCTCGCAGTTGACGGATTATTT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCAATATTTCTATTTCCGTCATAATAGATTATTGTACTTTTTGAAACTTCAAAGTTTGAACAAAATCCACAAATTTAAAAATGTAAAAGTCCTACTTGAGTAACACCCTTCCAGATTTTAGTAGAAAGTAAAAAGTTTCTTTATCGGAGTTTCCAAAATTGCAATTAACACAATATGGTTAACAGTAAAGCAGATACACTCAAAACATTTGAAAACCAAGAAACATCTGAAGTTTTTATTTTAACAAGCCATGAAAAAATCTTGATTTGTTCAAAAATCTTGATTTGTTTTTATCAAAATCACTTTCTGACCTCCTTGCTTTTTTCCTGTAGTATGGCTTCCTGCAAACTAGACATCCTAACATCCACCTACATTCTCATCAAAGCATTTTGCATCTGTCACAAAAAAATTTTTCTGAAAAAAACTTGCAGTGTATGAAATGCTTCAGCCCGATCTTTGTATTATGTGCTCTTCGTCGTATGTACATATATACATTTCTAGACGCACGGCCGATATATATTTTATTCCTCGCAGTTGACGGATTATTTAGTAGTTTAGTGCGGGAAGTAAAACATTGAAACGTCAGGATGATTTATTTGAACTCTGGAATTTTCGATGAAGCTGCTGAAAAATTGTAAAGATGAACATTGGGAAAATGTGTGATGCGTAAGTAACGGGAGAAGCTGATTCAAATATATTTTGAAAATTAACAATTTTTCAGTTTTGTTATACCGTAAGCATTTTTTTCAGAATACGTACATAACCGTCAACTTTGAGCTGATTAATTTTGGTCCCAGTGAAGTATATCAAAACGTTATATGCTGACAAAATATTTCAAATACCATGTTGATCATGTTATCAGCCGATCGTTTTTTTGATATTCCTCGTTCAATTCCTCGTTCAGCTTACCTCATCGAGTTGCCTTAAACAGTATCAGAGAATGCCCCCGGACGGTTTCTATGGATTTATCAAAACGTTACATGCTGACAAAATATTTC</canonical>
            <polymorphic>ATCCAATATTTCTATTTCCGTCATAATAGATTATTGTACTTTTTGAAACTTCAAAGTTTGAACAAAATCCACAAATTTAAAAATGTAAAAGTCCTACTTGAGTAACACCCTTCCAGATTTTAGTAGAAAGTAAAAAGTTTCTTTATCGGAGTTTCCAAAATTGCAATTAACACAATATGGTTAACAGTAAAGCAGATACACTCAAAACATTTGAAAACCAAGAAACATCTGAAGTTTTTATTTTAACAAGCCATGAAAAAATCTTGATTTGTTCAAAAATCTTGATTTGTTTTTATCAAAATCACTTTCTGACCTCCTTGCTTTTTTCCTGTAGTATGGCTTCCTGCAAACTAGACATCCTAACATCCACCTACATTCTCATCAAAGCATTTTGCATCTGTCACAAAAAAATTTTTCTGAAAAAAACTTGCAGTGTATGAAATGCTTCAGCCCGATCTTTGTATTATGTGCTCTTCGTCGTATGTACATATATACATTTYTAGACGCACGGCCGATATATATTTTATTCCTCGCAGTTGACGGATTATTTAGTAGTTTAGTGCGGGAAGTAAAACATTGAAACGTCAGGATGATTTATTTGAACTCTGGAATTTTCGATGAAGCTGCTGAAAAATTGTAAAGATGAACATTGGGAAAATGTGTGATGCGTAAGTAACGGGAGAAGCTGATTCAAATATATTTTGAAAATTAACAATTTTTCAGTTTTGTTATACCGTAAGCATTTTTTTCAGAATACGTACATAACCGTCAACTTTGAGCTGATTAATTTTGGTCCCAGTGAAGTATATCAAAACGTTATATGCTGACAAAATATTTCAAATACCATGTTGATCATGTTATCAGCCGATCGTTTTTTTGATATTCCTCGTTCAATTCCTCGTTCAGCTTACCTCATCGAGTTGCCTTAAACAGTATCAGAGAATGCCCCCGGACGGTTTCTATGGATTTATCAAAACGTTACATGCTGACAAAATATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 351 149</canonical_bands>
                <polymorphic_bands>649 351</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>394 219 150 113 86 20 18</canonical_bands>
                <polymorphic_bands>394 305 150 113 20 18</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAGTGTATGAAATGCTTCAG</pcr_primer_p1>
		<pcr_primer_p2>GTTACTTACGCATCACACATTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCAGTGTATGAAATGCTTCAGCCCGATCTTTGTATTATGTGCTCTTCGTCGTATGTACATATATACATTTCTAGACGCACGGCCGATATATATTTTATTCCTCGCAGTTGACGGATTATTTAGTAGTTTAGTGCGGGAAGTAAAACATTGAAACGTCAGGATGATTTATTTGAACTCTGGAATTTTCGATGAAGCTGCTGAAAAATTGTAAAGATGAACATTGGGAAAATGTGTGATGCGTAAGTAAC</canonical_amplicon>
		<polymorphic_amplicon>GCAGTGTATGAAATGCTTCAGCCCGATCTTTGTATTATGTGCTCTTCGTCGTATGTACATATATACATTTYTAGACGCACGGCCGATATATATTTTATTCCTCGCAGTTGACGGATTATTTAGTAGTTTAGTGCGGGAAGTAAAACATTGAAACGTCAGGATGATTTATTTGAACTCTGGAATTTTCGATGAAGCTGCTGAAAAATTGTAAAGATGAACATTGGGAAAATGTGTGATGCGTAAGTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6035</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>350567</contig_pos>
        <strand>+</strand>
        <context>AATWGCTCAT[A/G]CCCTTTCTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATAGCTCAT</left_flank>
        <right_flank>CCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATTATATTCCAAACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATATTATTTGTTGTCCCCCTCCTTGAACATCTTCCCTTTTTCTTACCTCATTTTTTTCGTCTTGTGAGTTAGGTTCCTCCTTTTTCGGCATTTTTCTTTTCGCTGTGAAAAAATGAAGGAAGAAATAAGGAGACGCTTCTTTTCGGCTCTACATTTTTCCCCTCTTACAACTACAAAAACTTGATGATGCGCACTTCTTCTCGCTTCACATCATGGAAAACGACAAGAAGTAGTTTTCACACAATCAAAACTCAAGTCCAGTTTTGAAGAATTTTAGGACTTCCGAGTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATAGCTCATACCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATTATATTCCAAACACAAATGAGGATTTTGTTTCAAGTCTAAAATTTTTTATCAGAACATTTCCAAGTTTTTTTTTCTTAAAAACAGAGTTTTAGGAATACAAAACTAGAAACGAATGTTTTCTTTAGGGTCTCAAGCAGATTTACTTTTATTTTCATTGCTTTTTTGGAATATTTCTGTCGAGTTTCGCAAGTTTTGTTAAAGCTTTTGTGATGGGAAAATGGAATTTCTATATTCGAAAGTTTCTAAATTGGACAATTTCGAGTTTCCAAAATTTTGAAAATCGGAGTATCCCAAGATTCCGAAATTCCAAAATTTTCGAAATCGGATAATTCCAAACTTCCGAAATTTTGAATATCAGCATTTTCGACATTCCGAAAATTTTCGAAAAAGACATTACCGAATCTTAGTCGTTTCACGTCACATCAATATTGCTGATTTTATCTACAGTAACATTTTATTCAC</canonical>
            <polymorphic>TAAATATTATTTGTTGTCCCCCTCCTTGAACATCTTCCCTTTTTCTTACCTCATTTTTTTCGTCTTGTGAGTTAGGTTCCTCCTTTTTCGGCATTTTTCTTTTCGCTGTGAAAAAATGAAGGAAGAAATAAGGAGACGCTTCTTTTCGGCTCTACATTTTTCCCCTCTTACAACTACAAAAACTTGATGATGCGCACTTCTTCTCGCTTCACATCATGGAAAACGACAAGAAGTAGTTTTCACACAATCAAAACTCAAGTCCAGTTTTGAAGAATTTTAGGACTTCCGAGTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATAGCTCATRCCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATTATATTCCAAACACAAATGAGGATTTTGTTTCAAGTCTAAAATTTTTTATCAGAACATTTCCAAGTTTTTTTTTCTTAAAAACAGAGTTTTAGGAATACAAAACTAGAAACGAATGTTTTCTTTAGGGTCTCAAGCAGATTTACTTTTATTTTCATTGCTTTTTTGGAATATTTCTGTCGAGTTTCGCAAGTTTTGTTAAAGCTTTTGTGATGGGAAAATGGAATTTCTATATTCGAAAGTTTCTAAATTGGACAATTTCGAGTTTCCAAAATTTTGAAAATCGGAGTATCCCAAGATTCCGAAATTCCAAAATTTTCGAAATCGGATAATTCCAAACTTCCGAAATTTTGAATATCAGCATTTTCGACATTCCGAAAATTTTCGAAAAAGACATTACCGAATCTTAGTCGTTTCACGTCACATCAATATTGCTGATTTTATCTACAGTAACATTTTATTCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGTGATAATTAGTGAGCATGT</pcr_primer_p1>
		<pcr_primer_p2>CCTCATTTGTGTTTGGAATATAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATAGCTCATACCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATTATATTCCAAACACAAATGAGG</canonical_amplicon>
		<polymorphic_amplicon>GGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATAGCTCATRCCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATTATATTCCAAACACAAATGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6036</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>350552</contig_pos>
        <strand></strand>
        <context>ATGATTGAAC[G/T]GGGGAATWGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATTATGTCTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAAC</left_flank>
        <right_flank>GGGGAATAGCTCATACCCTTTCTCCATAGGGAAAAATCGAAAAATCCAAT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATACTAGGAGGCCTAAATATTATTTGTTGTCCCCCTCCTTGAACATCTTCCCTTTTTCTTACCTCATTTTTTTCGTCTTGTGAGTTAGGTTCCTCCTTTTTCGGCATTTTTCTTTTCGCTGTGAAAAAATGAAGGAAGAAATAAGGAGACGCTTCTTTTCGGCTCTACATTTTTCCCCTCTTACAACTACAAAAACTTGATGATGCGCACTTCTTCTCGCTTCACATCATGGAAAACGACAAGAAGTAGTTTTCACACAATCAAAACTCAAGTCCAGTTTTGAAGAATTTTAGGACTTCCGAGTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATAGCTCATACCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATTATATTCCAAACACAAATGAGGATTTTGTTTCAAGTCTAAAATTTTTTATCAGAACATTTCCAAGTTTTTTTTTCTTAAAAACAGAGTTTTAGGAATACAAAACTAGAAACGAATGTTTTCTTTAGGGTCTCAAGCAGATTTACTTTTATTTTCATTGCTTTTTTGGAATATTTCTGTCGAGTTTCGCAAGTTTTGTTAAAGCTTTTGTGATGGGAAAATGGAATTTCTATATTCGAAAGTTTCTAAATTGGACAATTTCGAGTTTCCAAAATTTTGAAAATCGGAGTATCCCAAGATTCCGAAATTCCAAAATTTTCGAAATCGGATAATTCCAAACTTCCGAAATTTTGAATATCAGCATTTTCGACATTCCGAAAATTTTCGAAAAAGACATTACCGAATCTTAGTCGTTTCACGTCACATCAATATTGCTGATTTTATCTACAG</canonical>
            <polymorphic>ATATACTAGGAGGCCTAAATATTATTTGTTGTCCCCCTCCTTGAACATCTTCCCTTTTTCTTACCTCATTTTTTTCGTCTTGTGAGTTAGGTTCCTCCTTTTTCGGCATTTTTCTTTTCGCTGTGAAAAAATGAAGGAAGAAATAAGGAGACGCTTCTTTTCGGCTCTACATTTTTCCCCTCTTACAACTACAAAAACTTGATGATGCGCACTTCTTCTCGCTTCACATCATGGAAAACGACAAGAAGTAGTTTTCACACAATCAAAACTCAAGTCCAGTTTTGAAGAATTTTAGGACTTCCGAGTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACKGGGGAATAGCTCATACCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATTATATTCCAAACACAAATGAGGATTTTGTTTCAAGTCTAAAATTTTTTATCAGAACATTTCCAAGTTTTTTTTTCTTAAAAACAGAGTTTTAGGAATACAAAACTAGAAACGAATGTTTTCTTTAGGGTCTCAAGCAGATTTACTTTTATTTTCATTGCTTTTTTGGAATATTTCTGTCGAGTTTCGCAAGTTTTGTTAAAGCTTTTGTGATGGGAAAATGGAATTTCTATATTCGAAAGTTTCTAAATTGGACAATTTCGAGTTTCCAAAATTTTGAAAATCGGAGTATCCCAAGATTCCGAAATTCCAAAATTTTCGAAATCGGATAATTCCAAACTTCCGAAATTTTGAATATCAGCATTTTCGACATTCCGAAAATTTTCGAAAAAGACATTACCGAATCTTAGTCGTTTCACGTCACATCAATATTGCTGATTTTATCTACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGTGATAATTAGTGAGCATGT</pcr_primer_p1>
		<pcr_primer_p2>CCTCATTTGTGTTTGGAATATAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATAGCTCATACCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATTATATTCCAAACACAAATGAGG</canonical_amplicon>
		<polymorphic_amplicon>GGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACKGGGGAATAGCTCATACCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATTATATTCCAAACACAAATGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6038</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>350513</contig_pos>
        <strand>+</strand>
        <context>ATTATGTCTC[A/G]CWTTTTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTC</left_flank>
        <right_flank>CTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATAGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAAAGAATGAATGAGAAAAAGGAATCAAATGGGAATGATATACTAGGAGGCCTAAATATTATTTGTTGTCCCCCTCCTTGAACATCTTCCCTTTTTCTTACCTCATTTTTTTCGTCTTGTGAGTTAGGTTCCTCCTTTTTCGGCATTTTTCTTTTCGCTGTGAAAAAATGAAGGAAGAAATAAGGAGACGCTTCTTTTCGGCTCTACATTTTTCCCCTCTTACAACTACAAAAACTTGATGATGCGCACTTCTTCTCGCTTCACATCATGGAAAACGACAAGAAGTAGTTTTCACACAATCAAAACTCAAGTCCAGTTTTGAAGAATTTTAGGACTTCCGAGTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATAGCTCATACCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATTATATTCCAAACACAAATGAGGATTTTGTTTCAAGTCTAAAATTTTTTATCAGAACATTTCCAAGTTTTTTTTTCTTAAAAACAGAGTTTTAGGAATACAAAACTAGAAACGAATGTTTTCTTTAGGGTCTCAAGCAGATTTACTTTTATTTTCATTGCTTTTTTGGAATATTTCTGTCGAGTTTCGCAAGTTTTGTTAAAGCTTTTGTGATGGGAAAATGGAATTTCTATATTCGAAAGTTTCTAAATTGGACAATTTCGAGTTTCCAAAATTTTGAAAATCGGAGTATCCCAAGATTCCGAAATTCCAAAATTTTCGAAATCGGATAATTCCAAACTTCCGAAATTTTGAATATCAGCATTTTCGACATTCCGAAAATTTTCGAAAAAGACATTACCGAATCTTAGT</canonical>
            <polymorphic>ATGAAAGAATGAATGAGAAAAAGGAATCAAATGGGAATGATATACTAGGAGGCCTAAATATTATTTGTTGTCCCCCTCCTTGAACATCTTCCCTTTTTCTTACCTCATTTTTTTCGTCTTGTGAGTTAGGTTCCTCCTTTTTCGGCATTTTTCTTTTCGCTGTGAAAAAATGAAGGAAGAAATAAGGAGACGCTTCTTTTCGGCTCTACATTTTTCCCCTCTTACAACTACAAAAACTTGATGATGCGCACTTCTTCTCGCTTCACATCATGGAAAACGACAAGAAGTAGTTTTCACACAATCAAAACTCAAGTCCAGTTTTGAAGAATTTTAGGACTTCCGAGTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCRCTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATAGCTCATACCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATTATATTCCAAACACAAATGAGGATTTTGTTTCAAGTCTAAAATTTTTTATCAGAACATTTCCAAGTTTTTTTTTCTTAAAAACAGAGTTTTAGGAATACAAAACTAGAAACGAATGTTTTCTTTAGGGTCTCAAGCAGATTTACTTTTATTTTCATTGCTTTTTTGGAATATTTCTGTCGAGTTTCGCAAGTTTTGTTAAAGCTTTTGTGATGGGAAAATGGAATTTCTATATTCGAAAGTTTCTAAATTGGACAATTTCGAGTTTCCAAAATTTTGAAAATCGGAGTATCCCAAGATTCCGAAATTCCAAAATTTTCGAAATCGGATAATTCCAAACTTCCGAAATTTTGAATATCAGCATTTTCGACATTCCGAAAATTTTCGAAAAAGACATTACCGAATCTTAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>199 197 123 86 82 75 55 41 31 31 22 20 15 10 9 2 2</canonical_bands>
                <polymorphic_bands>199 197 123 86 82 77 75 41 31 31 20 15 10 9 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATATTTTCCCATTTTGTTGTC</pcr_primer_p1>
		<pcr_primer_p2>AATATTGGATTTTTCGATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATAGCTCATACCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATT</canonical_amplicon>
		<polymorphic_amplicon>GTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCRCTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATAGCTCATACCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6039</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>350502</contig_pos>
        <strand>+</strand>
        <context>CCAGATGATT[C/T]ATTATGTCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATT</left_flank>
        <right_flank>ATTATGTCTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGGTTTGAATGAAAGAATGAATGAGAAAAAGGAATCAAATGGGAATGATATACTAGGAGGCCTAAATATTATTTGTTGTCCCCCTCCTTGAACATCTTCCCTTTTTCTTACCTCATTTTTTTCGTCTTGTGAGTTAGGTTCCTCCTTTTTCGGCATTTTTCTTTTCGCTGTGAAAAAATGAAGGAAGAAATAAGGAGACGCTTCTTTTCGGCTCTACATTTTTCCCCTCTTACAACTACAAAAACTTGATGATGCGCACTTCTTCTCGCTTCACATCATGGAAAACGACAAGAAGTAGTTTTCACACAATCAAAACTCAAGTCCAGTTTTGAAGAATTTTAGGACTTCCGAGTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATAGCTCATACCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATTATATTCCAAACACAAATGAGGATTTTGTTTCAAGTCTAAAATTTTTTATCAGAACATTTCCAAGTTTTTTTTTCTTAAAAACAGAGTTTTAGGAATACAAAACTAGAAACGAATGTTTTCTTTAGGGTCTCAAGCAGATTTACTTTTATTTTCATTGCTTTTTTGGAATATTTCTGTCGAGTTTCGCAAGTTTTGTTAAAGCTTTTGTGATGGGAAAATGGAATTTCTATATTCGAAAGTTTCTAAATTGGACAATTTCGAGTTTCCAAAATTTTGAAAATCGGAGTATCCCAAGATTCCGAAATTCCAAAATTTTCGAAATCGGATAATTCCAAACTTCCGAAATTTTGAATATCAGCATTTTCGACATTCCGAAAATTTTCGAAAAAGACATTAC</canonical>
            <polymorphic>TTCTGGTTTGAATGAAAGAATGAATGAGAAAAAGGAATCAAATGGGAATGATATACTAGGAGGCCTAAATATTATTTGTTGTCCCCCTCCTTGAACATCTTCCCTTTTTCTTACCTCATTTTTTTCGTCTTGTGAGTTAGGTTCCTCCTTTTTCGGCATTTTTCTTTTCGCTGTGAAAAAATGAAGGAAGAAATAAGGAGACGCTTCTTTTCGGCTCTACATTTTTCCCCTCTTACAACTACAAAAACTTGATGATGCGCACTTCTTCTCGCTTCACATCATGGAAAACGACAAGAAGTAGTTTTCACACAATCAAAACTCAAGTCCAGTTTTGAAGAATTTTAGGACTTCCGAGTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTYATTATGTCTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATAGCTCATACCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATTATATTCCAAACACAAATGAGGATTTTGTTTCAAGTCTAAAATTTTTTATCAGAACATTTCCAAGTTTTTTTTTCTTAAAAACAGAGTTTTAGGAATACAAAACTAGAAACGAATGTTTTCTTTAGGGTCTCAAGCAGATTTACTTTTATTTTCATTGCTTTTTTGGAATATTTCTGTCGAGTTTCGCAAGTTTTGTTAAAGCTTTTGTGATGGGAAAATGGAATTTCTATATTCGAAAGTTTCTAAATTGGACAATTTCGAGTTTCCAAAATTTTGAAAATCGGAGTATCCCAAGATTCCGAAATTCCAAAATTTTCGAAATCGGATAATTCCAAACTTCCGAAATTTTGAATATCAGCATTTTCGACATTCCGAAAATTTTCGAAAAAGACATTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATATTTTCCCATTTTGTTGTC</pcr_primer_p1>
		<pcr_primer_p2>AATATTGGATTTTTCGATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATAGCTCATACCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATT</canonical_amplicon>
		<polymorphic_amplicon>GTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTYATTATGTCTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATAGCTCATACCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6040</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>350446</contig_pos>
        <strand>+</strand>
        <context>TAAGAATACG[A/C]ATTTTTCATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACG</left_flank>
        <right_flank>ATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATCCAATCCCTGTGTTGTCCCATTCCTATTCTTATTTCGAGAGAAAAGCATTTATTCTGGTTTGAATGAAAGAATGAATGAGAAAAAGGAATCAAATGGGAATGATATACTAGGAGGCCTAAATATTATTTGTTGTCCCCCTCCTTGAACATCTTCCCTTTTTCTTACCTCATTTTTTTCGTCTTGTGAGTTAGGTTCCTCCTTTTTCGGCATTTTTCTTTTCGCTGTGAAAAAATGAAGGAAGAAATAAGGAGACGCTTCTTTTCGGCTCTACATTTTTCCCCTCTTACAACTACAAAAACTTGATGATGCGCACTTCTTCTCGCTTCACATCATGGAAAACGACAAGAAGTAGTTTTCACACAATCAAAACTCAAGTCCAGTTTTGAAGAATTTTAGGACTTCCGAGTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATAGCTCATACCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATTATATTCCAAACACAAATGAGGATTTTGTTTCAAGTCTAAAATTTTTTATCAGAACATTTCCAAGTTTTTTTTTCTTAAAAACAGAGTTTTAGGAATACAAAACTAGAAACGAATGTTTTCTTTAGGGTCTCAAGCAGATTTACTTTTATTTTCATTGCTTTTTTGGAATATTTCTGTCGAGTTTCGCAAGTTTTGTTAAAGCTTTTGTGATGGGAAAATGGAATTTCTATATTCGAAAGTTTCTAAATTGGACAATTTCGAGTTTCCAAAATTTTGAAAATCGGAGTATCCCAAGATTCCGAAATTCCAAAATTTTCGAAATCGGATAATTCCAAACTTCC</canonical>
            <polymorphic>TCATCCAATCCCTGTGTTGTCCCATTCCTATTCTTATTTCGAGAGAAAAGCATTTATTCTGGTTTGAATGAAAGAATGAATGAGAAAAAGGAATCAAATGGGAATGATATACTAGGAGGCCTAAATATTATTTGTTGTCCCCCTCCTTGAACATCTTCCCTTTTTCTTACCTCATTTTTTTCGTCTTGTGAGTTAGGTTCCTCCTTTTTCGGCATTTTTCTTTTCGCTGTGAAAAAATGAAGGAAGAAATAAGGAGACGCTTCTTTTCGGCTCTACATTTTTCCCCTCTTACAACTACAAAAACTTGATGATGCGCACTTCTTCTCGCTTCACATCATGGAAAACGACAAGAAGTAGTTTTCACACAATCAAAACTCAAGTCCAGTTTTGAAGAATTTTAGGACTTCCGAGTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGMATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATAGCTCATACCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATTATATTCCAAACACAAATGAGGATTTTGTTTCAAGTCTAAAATTTTTTATCAGAACATTTCCAAGTTTTTTTTTCTTAAAAACAGAGTTTTAGGAATACAAAACTAGAAACGAATGTTTTCTTTAGGGTCTCAAGCAGATTTACTTTTATTTTCATTGCTTTTTTGGAATATTTCTGTCGAGTTTCGCAAGTTTTGTTAAAGCTTTTGTGATGGGAAAATGGAATTTCTATATTCGAAAGTTTCTAAATTGGACAATTTCGAGTTTCCAAAATTTTGAAAATCGGAGTATCCCAAGATTCCGAAATTCCAAAATTTTCGAAATCGGATAATTCCAAACTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>393 182 158 77 48 33 32 31 29 9 8</canonical_bands>
                <polymorphic_bands>393 182 158 77 61 48 33 31 9 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>393 182 120 51 38 33 32 29 26 24 17 16 14 9 8 8</canonical_bands>
                <polymorphic_bands>393 182 120 61 51 38 33 26 24 17 16 14 9 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGTAGTTTTCACACAATCAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATCATTTCAGACACTCCAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGTAGTTTTCACACAATCAAAACTCAAGTCCAGTTTTGAAGAATTTTAGGACTTCCGAGTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGAT</canonical_amplicon>
		<polymorphic_amplicon>GAAGTAGTTTTCACACAATCAAAACTCAAGTCCAGTTTTGAAGAATTTTAGGACTTCCGAGTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGMATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6041</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>350329</contig_pos>
        <strand>+</strand>
        <context>AACTCAAGTC[C/G]AGTTTTGAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CATCATGGAAAACGACAAGAAGTAGTTTTCACACAATCAAAACTCAAGTC</left_flank>
        <right_flank>AGTTTTGAAGAATTTTAGGACTTCCGAGTATATTTTCCCATTTTGTTGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAATAATTATGAATTGTCTTGATGAAAAAGATCTCTAGGGAGTTAGCCTTGTTGACTGGGACGCGGACACGATTACAGATTACAAATTCGAGTGTCCAAAACCGAAACAACAATTTCATCCAATCCCTGTGTTGTCCCATTCCTATTCTTATTTCGAGAGAAAAGCATTTATTCTGGTTTGAATGAAAGAATGAATGAGAAAAAGGAATCAAATGGGAATGATATACTAGGAGGCCTAAATATTATTTGTTGTCCCCCTCCTTGAACATCTTCCCTTTTTCTTACCTCATTTTTTTCGTCTTGTGAGTTAGGTTCCTCCTTTTTCGGCATTTTTCTTTTCGCTGTGAAAAAATGAAGGAAGAAATAAGGAGACGCTTCTTTTCGGCTCTACATTTTTCCCCTCTTACAACTACAAAAACTTGATGATGCGCACTTCTTCTCGCTTCACATCATGGAAAACGACAAGAAGTAGTTTTCACACAATCAAAACTCAAGTCCAGTTTTGAAGAATTTTAGGACTTCCGAGTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATAGCTCATACCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATTATATTCCAAACACAAATGAGGATTTTGTTTCAAGTCTAAAATTTTTTATCAGAACATTTCCAAGTTTTTTTTTCTTAAAAACAGAGTTTTAGGAATACAAAACTAGAAACGAATGTTTTCTTTAGGGTCTCAAGCAGATTTACTTTTATTTTCATTGCTTTTTTGGAATATTTCTGTCGAGTTTCGCAAGTTTTGTTAAAGCTTTTGTGATGGGAAAATGGAAT</canonical>
            <polymorphic>CAAAATAATTATGAATTGTCTTGATGAAAAAGATCTCTAGGGAGTTAGCCTTGTTGACTGGGACGCGGACACGATTACAGATTACAAATTCGAGTGTCCAAAACCGAAACAACAATTTCATCCAATCCCTGTGTTGTCCCATTCCTATTCTTATTTCGAGAGAAAAGCATTTATTCTGGTTTGAATGAAAGAATGAATGAGAAAAAGGAATCAAATGGGAATGATATACTAGGAGGCCTAAATATTATTTGTTGTCCCCCTCCTTGAACATCTTCCCTTTTTCTTACCTCATTTTTTTCGTCTTGTGAGTTAGGTTCCTCCTTTTTCGGCATTTTTCTTTTCGCTGTGAAAAAATGAAGGAAGAAATAAGGAGACGCTTCTTTTCGGCTCTACATTTTTCCCCTCTTACAACTACAAAAACTTGATGATGCGCACTTCTTCTCGCTTCACATCATGGAAAACGACAAGAAGTAGTTTTCACACAATCAAAACTCAAGTCSAGTTTTGAAGAATTTTAGGACTTCCGAGTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATAGCTCATACCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATTATATTCCAAACACAAATGAGGATTTTGTTTCAAGTCTAAAATTTTTTATCAGAACATTTCCAAGTTTTTTTTTCTTAAAAACAGAGTTTTAGGAATACAAAACTAGAAACGAATGTTTTCTTTAGGGTCTCAAGCAGATTTACTTTTATTTTCATTGCTTTTTTGGAATATTTCTGTCGAGTTTCGCAAGTTTTGTTAAAGCTTTTGTGATGGGAAAATGGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATTTTTCCCCTCTTACAACTA</pcr_primer_p1>
		<pcr_primer_p2>TTGATTAACAATCACATGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATTTTTCCCCTCTTACAACTACAAAAACTTGATGATGCGCACTTCTTCTCGCTTCACATCATGGAAAACGACAAGAAGTAGTTTTCACACAATCAAAACTCAAGTCCAGTTTTGAAGAATTTTAGGACTTCCGAGTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAA</canonical_amplicon>
		<polymorphic_amplicon>ACATTTTTCCCCTCTTACAACTACAAAAACTTGATGATGCGCACTTCTTCTCGCTTCACATCATGGAAAACGACAAGAAGTAGTTTTCACACAATCAAAACTCAAGTCSAGTTTTGAAGAATTTTAGGACTTCCGAGTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6042</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>426137</contig_pos>
        <strand>+</strand>
        <context>TTTCGTGGTC[C/T]AAATAGAACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTTCTATTCAGTATTTTCTTGCTCTTTTCGGAATAGACTTTCGTGGTC</left_flank>
        <right_flank>AAATAGAACAAATGTTTTAAATAGTCCATCACATTATACGTGTCTTCTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATCTGAGCTTCAAAGTGTGTCTCCTTGGGTTTCTTCGCTTAGTGACTATTGCGAGAGTCTGTTGGCTCCGCCTCCAACTCTTCAAAAAATCTGGCTGGTGCGCCTACGGCACGATTTCGCTGTCTCAATCTTAATTTTCATATCACTAATTTGAAACCGGCCGTTGCCGAGGACTTATCAGTCCGCTCTTTCGGAAATGAGCTCTGGGACTCAGAAACTAATAAGCCGTCGTATCCTACCTATCACAGAAGTGTCCTATCTAAAACGCAGCAGCCGTCCGTAACCCAGCCTTGGTGAAAACGAAGAGCTCCTTTGGAAAACTTATTAAAAGAATGATGACGATAATCTTCTTTGACCTTGATTAGAGCACTAATCTTTTTTTTTTCTCACCTAGACATCTAACTATTCACCTCCCCAATTTCTTCTCCCATATTTCCTTATGGTTCGTCTTTCTATTCAGTATTTTCTTGCTCTTTTCGGAATAGACTTTCGTGGTCCAAATAGAACAAATGTTTTAAATAGTCCATCACATTATACGTGTCTTCTCTTTTTTTTTCCTCCCTCTTTTTTTCAATGTTTTCTCAACTAAGTCATTCGTTCTCAAAGATAACAGCAAATTTTATAAAAACAGTTATTTCAGCACTGGTCAAATTCCTGCAGCTTCATTTTGCCGTTGGATTTGCACACTGCCTAACGATGAACGATCCACCATTAGGAAGGTCGCAAGTGCCTTCCAATTCGAGGACCCAGCCAATGAACCAAATGGAACAGCTTTTGCAGTTGAGGAAAACGCTAGAGGTTTGTCAGAGCACTGGAAAAAGCTTGATGGACGACGTGGATGAGAAGATCTCTATTGTGAAACTCTCGGAAGATGTCGAGAAGCTTCATGGTCAGATTTCAAACGTGTCTTCCGAGGTGAATTCAATTAATACTCGAACCGGGTCAATGGAGTCGGTGCTGGAGAAACTTCTTGAGAATTCGAACAAAACTTTGGAGAA</canonical>
            <polymorphic>CTATCTGAGCTTCAAAGTGTGTCTCCTTGGGTTTCTTCGCTTAGTGACTATTGCGAGAGTCTGTTGGCTCCGCCTCCAACTCTTCAAAAAATCTGGCTGGTGCGCCTACGGCACGATTTCGCTGTCTCAATCTTAATTTTCATATCACTAATTTGAAACCGGCCGTTGCCGAGGACTTATCAGTCCGCTCTTTCGGAAATGAGCTCTGGGACTCAGAAACTAATAAGCCGTCGTATCCTACCTATCACAGAAGTGTCCTATCTAAAACGCAGCAGCCGTCCGTAACCCAGCCTTGGTGAAAACGAAGAGCTCCTTTGGAAAACTTATTAAAAGAATGATGACGATAATCTTCTTTGACCTTGATTAGAGCACTAATCTTTTTTTTTTCTCACCTAGACATCTAACTATTCACCTCCCCAATTTCTTCTCCCATATTTCCTTATGGTTCGTCTTTCTATTCAGTATTTTCTTGCTCTTTTCGGAATAGACTTTCGTGGTCYAAATAGAACAAATGTTTTAAATAGTCCATCACATTATACGTGTCTTCTCTTTTTTTTTCCTCCCTCTTTTTTTCAATGTTTTCTCAACTAAGTCATTCGTTCTCAAAGATAACAGCAAATTTTATAAAAACAGTTATTTCAGCACTGGTCAAATTCCTGCAGCTTCATTTTGCCGTTGGATTTGCACACTGCCTAACGATGAACGATCCACCATTAGGAAGGTCGCAAGTGCCTTCCAATTCGAGGACCCAGCCAATGAACCAAATGGAACAGCTTTTGCAGTTGAGGAAAACGCTAGAGGTTTGTCAGAGCACTGGAAAAAGCTTGATGGACGACGTGGATGAGAAGATCTCTATTGTGAAACTCTCGGAAGATGTCGAGAAGCTTCATGGTCAGATTTCAAACGTGTCTTCCGAGGTGAATTCAATTAATACTCGAACCGGGTCAATGGAGTCGGTGCTGGAGAAACTTCTTGAGAATTCGAACAAAACTTTGGAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>496 255 249</canonical_bands>
                <polymorphic_bands>745 255</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>496 255 249</canonical_bands>
                <polymorphic_bands>745 255</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCTTCTTTGACCTTGATTAGAG</pcr_primer_p1>
		<pcr_primer_p2>TGACTTAGTTGAGAAAACATTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCTTCTTTGACCTTGATTAGAGCACTAATCTTTTTTTTTTCTCACCTAGACATCTAACTATTCACCTCCCCAATTTCTTCTCCCATATTTCCTTATGGTTCGTCTTTCTATTCAGTATTTTCTTGCTCTTTTCGGAATAGACTTTCGTGGTCCAAATAGAACAAATGTTTTAAATAGTCCATCACATTATACGTGTCTTCTCTTTTTTTTTCCTCCCTCTTTTTTTCAATGTTTTCTCAACTAAGTCA</canonical_amplicon>
		<polymorphic_amplicon>AATCTTCTTTGACCTTGATTAGAGCACTAATCTTTTTTTTTTCTCACCTAGACATCTAACTATTCACCTCCCCAATTTCTTCTCCCATATTTCCTTATGGTTCGTCTTTCTATTCAGTATTTTCTTGCTCTTTTCGGAATAGACTTTCGTGGTCYAAATAGAACAAATGTTTTAAATAGTCCATCACATTATACGTGTCTTCTCTTTTTTTTTCCTCCCTCTTTTTTTCAATGTTTTCTCAACTAAGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6043</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>426151</contig_pos>
        <strand>+</strand>
        <context>TAGAACAAAT[A/G]TTTTAAATAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTCTTGCTCTTTTCGGAATAGACTTTCGTGGTCCAAATAGAACAAAT</left_flank>
        <right_flank>TTTTAAATAGTCCATCACATTATACGTGTCTTCTCTTTTTTTTTCCTCCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTGTGTCTCCTTGGGTTTCTTCGCTTAGTGACTATTGCGAGAGTCTGTTGGCTCCGCCTCCAACTCTTCAAAAAATCTGGCTGGTGCGCCTACGGCACGATTTCGCTGTCTCAATCTTAATTTTCATATCACTAATTTGAAACCGGCCGTTGCCGAGGACTTATCAGTCCGCTCTTTCGGAAATGAGCTCTGGGACTCAGAAACTAATAAGCCGTCGTATCCTACCTATCACAGAAGTGTCCTATCTAAAACGCAGCAGCCGTCCGTAACCCAGCCTTGGTGAAAACGAAGAGCTCCTTTGGAAAACTTATTAAAAGAATGATGACGATAATCTTCTTTGACCTTGATTAGAGCACTAATCTTTTTTTTTTCTCACCTAGACATCTAACTATTCACCTCCCCAATTTCTTCTCCCATATTTCCTTATGGTTCGTCTTTCTATTCAGTATTTTCTTGCTCTTTTCGGAATAGACTTTCGTGGTCCAAATAGAACAAATGTTTTAAATAGTCCATCACATTATACGTGTCTTCTCTTTTTTTTTCCTCCCTCTTTTTTTCAATGTTTTCTCAACTAAGTCATTCGTTCTCAAAGATAACAGCAAATTTTATAAAAACAGTTATTTCAGCACTGGTCAAATTCCTGCAGCTTCATTTTGCCGTTGGATTTGCACACTGCCTAACGATGAACGATCCACCATTAGGAAGGTCGCAAGTGCCTTCCAATTCGAGGACCCAGCCAATGAACCAAATGGAACAGCTTTTGCAGTTGAGGAAAACGCTAGAGGTTTGTCAGAGCACTGGAAAAAGCTTGATGGACGACGTGGATGAGAAGATCTCTATTGTGAAACTCTCGGAAGATGTCGAGAAGCTTCATGGTCAGATTTCAAACGTGTCTTCCGAGGTGAATTCAATTAATACTCGAACCGGGTCAATGGAGTCGGTGCTGGAGAAACTTCTTGAGAATTCGAACAAAACTTTGGAGAATCATTCGAGTCTGG</canonical>
            <polymorphic>AAGTGTGTCTCCTTGGGTTTCTTCGCTTAGTGACTATTGCGAGAGTCTGTTGGCTCCGCCTCCAACTCTTCAAAAAATCTGGCTGGTGCGCCTACGGCACGATTTCGCTGTCTCAATCTTAATTTTCATATCACTAATTTGAAACCGGCCGTTGCCGAGGACTTATCAGTCCGCTCTTTCGGAAATGAGCTCTGGGACTCAGAAACTAATAAGCCGTCGTATCCTACCTATCACAGAAGTGTCCTATCTAAAACGCAGCAGCCGTCCGTAACCCAGCCTTGGTGAAAACGAAGAGCTCCTTTGGAAAACTTATTAAAAGAATGATGACGATAATCTTCTTTGACCTTGATTAGAGCACTAATCTTTTTTTTTTCTCACCTAGACATCTAACTATTCACCTCCCCAATTTCTTCTCCCATATTTCCTTATGGTTCGTCTTTCTATTCAGTATTTTCTTGCTCTTTTCGGAATAGACTTTCGTGGTCCAAATAGAACAAATRTTTTAAATAGTCCATCACATTATACGTGTCTTCTCTTTTTTTTTCCTCCCTCTTTTTTTCAATGTTTTCTCAACTAAGTCATTCGTTCTCAAAGATAACAGCAAATTTTATAAAAACAGTTATTTCAGCACTGGTCAAATTCCTGCAGCTTCATTTTGCCGTTGGATTTGCACACTGCCTAACGATGAACGATCCACCATTAGGAAGGTCGCAAGTGCCTTCCAATTCGAGGACCCAGCCAATGAACCAAATGGAACAGCTTTTGCAGTTGAGGAAAACGCTAGAGGTTTGTCAGAGCACTGGAAAAAGCTTGATGGACGACGTGGATGAGAAGATCTCTATTGTGAAACTCTCGGAAGATGTCGAGAAGCTTCATGGTCAGATTTCAAACGTGTCTTCCGAGGTGAATTCAATTAATACTCGAACCGGGTCAATGGAGTCGGTGCTGGAGAAACTTCTTGAGAATTCGAACAAAACTTTGGAGAATCATTCGAGTCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCTTCTTTGACCTTGATTAGAG</pcr_primer_p1>
		<pcr_primer_p2>TGACTTAGTTGAGAAAACATTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCTTCTTTGACCTTGATTAGAGCACTAATCTTTTTTTTTTCTCACCTAGACATCTAACTATTCACCTCCCCAATTTCTTCTCCCATATTTCCTTATGGTTCGTCTTTCTATTCAGTATTTTCTTGCTCTTTTCGGAATAGACTTTCGTGGTCCAAATAGAACAAATGTTTTAAATAGTCCATCACATTATACGTGTCTTCTCTTTTTTTTTCCTCCCTCTTTTTTTCAATGTTTTCTCAACTAAGTCA</canonical_amplicon>
		<polymorphic_amplicon>AATCTTCTTTGACCTTGATTAGAGCACTAATCTTTTTTTTTTCTCACCTAGACATCTAACTATTCACCTCCCCAATTTCTTCTCCCATATTTCCTTATGGTTCGTCTTTCTATTCAGTATTTTCTTGCTCTTTTCGGAATAGACTTTCGTGGTCCAAATAGAACAAATRTTTTAAATAGTCCATCACATTATACGTGTCTTCTCTTTTTTTTTCCTCCCTCTTTTTTTCAATGTTTTCTCAACTAAGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6044</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>426179</contig_pos>
        <strand>+</strand>
        <context>CATTATACGT[A/G]TCTTCTCTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGTGGTCCAAATAGAACAAATGTTTTAAATAGTCCATCACATTATACGT</left_flank>
        <right_flank>TCTTCTCTTTTTTTTTCCTCCCTCTTTTTTTCAATGTTTTCTCAACTAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTGACTATTGCGAGAGTCTGTTGGCTCCGCCTCCAACTCTTCAAAAAATCTGGCTGGTGCGCCTACGGCACGATTTCGCTGTCTCAATCTTAATTTTCATATCACTAATTTGAAACCGGCCGTTGCCGAGGACTTATCAGTCCGCTCTTTCGGAAATGAGCTCTGGGACTCAGAAACTAATAAGCCGTCGTATCCTACCTATCACAGAAGTGTCCTATCTAAAACGCAGCAGCCGTCCGTAACCCAGCCTTGGTGAAAACGAAGAGCTCCTTTGGAAAACTTATTAAAAGAATGATGACGATAATCTTCTTTGACCTTGATTAGAGCACTAATCTTTTTTTTTTCTCACCTAGACATCTAACTATTCACCTCCCCAATTTCTTCTCCCATATTTCCTTATGGTTCGTCTTTCTATTCAGTATTTTCTTGCTCTTTTCGGAATAGACTTTCGTGGTCCAAATAGAACAAATGTTTTAAATAGTCCATCACATTATACGTGTCTTCTCTTTTTTTTTCCTCCCTCTTTTTTTCAATGTTTTCTCAACTAAGTCATTCGTTCTCAAAGATAACAGCAAATTTTATAAAAACAGTTATTTCAGCACTGGTCAAATTCCTGCAGCTTCATTTTGCCGTTGGATTTGCACACTGCCTAACGATGAACGATCCACCATTAGGAAGGTCGCAAGTGCCTTCCAATTCGAGGACCCAGCCAATGAACCAAATGGAACAGCTTTTGCAGTTGAGGAAAACGCTAGAGGTTTGTCAGAGCACTGGAAAAAGCTTGATGGACGACGTGGATGAGAAGATCTCTATTGTGAAACTCTCGGAAGATGTCGAGAAGCTTCATGGTCAGATTTCAAACGTGTCTTCCGAGGTGAATTCAATTAATACTCGAACCGGGTCAATGGAGTCGGTGCTGGAGAAACTTCTTGAGAATTCGAACAAAACTTTGGAGAATCATTCGAGTCTGGAAGCAACAATCACCAAGTCGAATGCCGA</canonical>
            <polymorphic>AGTGACTATTGCGAGAGTCTGTTGGCTCCGCCTCCAACTCTTCAAAAAATCTGGCTGGTGCGCCTACGGCACGATTTCGCTGTCTCAATCTTAATTTTCATATCACTAATTTGAAACCGGCCGTTGCCGAGGACTTATCAGTCCGCTCTTTCGGAAATGAGCTCTGGGACTCAGAAACTAATAAGCCGTCGTATCCTACCTATCACAGAAGTGTCCTATCTAAAACGCAGCAGCCGTCCGTAACCCAGCCTTGGTGAAAACGAAGAGCTCCTTTGGAAAACTTATTAAAAGAATGATGACGATAATCTTCTTTGACCTTGATTAGAGCACTAATCTTTTTTTTTTCTCACCTAGACATCTAACTATTCACCTCCCCAATTTCTTCTCCCATATTTCCTTATGGTTCGTCTTTCTATTCAGTATTTTCTTGCTCTTTTCGGAATAGACTTTCGTGGTCCAAATAGAACAAATGTTTTAAATAGTCCATCACATTATACGTRTCTTCTCTTTTTTTTTCCTCCCTCTTTTTTTCAATGTTTTCTCAACTAAGTCATTCGTTCTCAAAGATAACAGCAAATTTTATAAAAACAGTTATTTCAGCACTGGTCAAATTCCTGCAGCTTCATTTTGCCGTTGGATTTGCACACTGCCTAACGATGAACGATCCACCATTAGGAAGGTCGCAAGTGCCTTCCAATTCGAGGACCCAGCCAATGAACCAAATGGAACAGCTTTTGCAGTTGAGGAAAACGCTAGAGGTTTGTCAGAGCACTGGAAAAAGCTTGATGGACGACGTGGATGAGAAGATCTCTATTGTGAAACTCTCGGAAGATGTCGAGAAGCTTCATGGTCAGATTTCAAACGTGTCTTCCGAGGTGAATTCAATTAATACTCGAACCGGGTCAATGGAGTCGGTGCTGGAGAAACTTCTTGAGAATTCGAACAAAACTTTGGAGAATCATTCGAGTCTGGAAGCAACAATCACCAAGTCGAATGCCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>496 366 138</canonical_bands>
                <polymorphic_bands>862 138</polymorphic_bands>
            </assay>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>102 100 85 82 73 67 56 48 43 42 39 35 34 26 22 21 21 20 20 16 12 11 11 8 4 2</canonical_bands>
                <polymorphic_bands>113 100 85 82 73 67 56 48 43 42 39 35 34 26 22 21 21 20 20 16 12 11 8 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTGACCTTGATTAGAGCAC</pcr_primer_p1>
		<pcr_primer_p2>AACGAATGACTTAGTTGAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTTTGACCTTGATTAGAGCACTAATCTTTTTTTTTTCTCACCTAGACATCTAACTATTCACCTCCCCAATTTCTTCTCCCATATTTCCTTATGGTTCGTCTTTCTATTCAGTATTTTCTTGCTCTTTTCGGAATAGACTTTCGTGGTCCAAATAGAACAAATGTTTTAAATAGTCCATCACATTATACGTGTCTTCTCTTTTTTTTTCCTCCCTCTTTTTTTCAATGTTTTCTCAACTAAGTCATTCGTT</canonical_amplicon>
		<polymorphic_amplicon>TCTTTGACCTTGATTAGAGCACTAATCTTTTTTTTTTCTCACCTAGACATCTAACTATTCACCTCCCCAATTTCTTCTCCCATATTTCCTTATGGTTCGTCTTTCTATTCAGTATTTTCTTGCTCTTTTCGGAATAGACTTTCGTGGTCCAAATAGAACAAATGTTTTAAATAGTCCATCACATTATACGTRTCTTCTCTTTTTTTTTCCTCCCTCTTTTTTTCAATGTTTTCTCAACTAAGTCATTCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6045</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>426312</contig_pos>
        <strand>+</strand>
        <context>TCATTTTGCC[A/G]TTGGATTTGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAAAACAGTTATTTCAGCACTGGTCAAATTCCTGCAGCTTCATTTTGCC</left_flank>
        <right_flank>TTGGATTTGCACACTGCCTAACGATGAACGATCCACCATTAGGAAGGTCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTATCAGTCCGCTCTTTCGGAAATGAGCTCTGGGACTCAGAAACTAATAAGCCGTCGTATCCTACCTATCACAGAAGTGTCCTATCTAAAACGCAGCAGCCGTCCGTAACCCAGCCTTGGTGAAAACGAAGAGCTCCTTTGGAAAACTTATTAAAAGAATGATGACGATAATCTTCTTTGACCTTGATTAGAGCACTAATCTTTTTTTTTTCTCACCTAGACATCTAACTATTCACCTCCCCAATTTCTTCTCCCATATTTCCTTATGGTTCGTCTTTCTATTCAGTATTTTCTTGCTCTTTTCGGAATAGACTTTCGTGGTCCAAATAGAACAAATGTTTTAAATAGTCCATCACATTATACGTGTCTTCTCTTTTTTTTTCCTCCCTCTTTTTTTCAATGTTTTCTCAACTAAGTCATTCGTTCTCAAAGATAACAGCAAATTTTATAAAAACAGTTATTTCAGCACTGGTCAAATTCCTGCAGCTTCATTTTGCCGTTGGATTTGCACACTGCCTAACGATGAACGATCCACCATTAGGAAGGTCGCAAGTGCCTTCCAATTCGAGGACCCAGCCAATGAACCAAATGGAACAGCTTTTGCAGTTGAGGAAAACGCTAGAGGTTTGTCAGAGCACTGGAAAAAGCTTGATGGACGACGTGGATGAGAAGATCTCTATTGTGAAACTCTCGGAAGATGTCGAGAAGCTTCATGGTCAGATTTCAAACGTGTCTTCCGAGGTGAATTCAATTAATACTCGAACCGGGTCAATGGAGTCGGTGCTGGAGAAACTTCTTGAGAATTCGAACAAAACTTTGGAGAATCATTCGAGTCTGGAAGCAACAATCACCAAGTCGAATGCCGATGTTGAAGCCATCAAACAACATATTCAAATGTTTGATTCACACAATTTTCAAGAAAAGTACTCGAGAATAGAGCAAGCTGTTATCACGTCAGCAGGCGGTATCGAAAAAATCAATCAACATTTGGAAGCGTTT</canonical>
            <polymorphic>CTTATCAGTCCGCTCTTTCGGAAATGAGCTCTGGGACTCAGAAACTAATAAGCCGTCGTATCCTACCTATCACAGAAGTGTCCTATCTAAAACGCAGCAGCCGTCCGTAACCCAGCCTTGGTGAAAACGAAGAGCTCCTTTGGAAAACTTATTAAAAGAATGATGACGATAATCTTCTTTGACCTTGATTAGAGCACTAATCTTTTTTTTTTCTCACCTAGACATCTAACTATTCACCTCCCCAATTTCTTCTCCCATATTTCCTTATGGTTCGTCTTTCTATTCAGTATTTTCTTGCTCTTTTCGGAATAGACTTTCGTGGTCCAAATAGAACAAATGTTTTAAATAGTCCATCACATTATACGTGTCTTCTCTTTTTTTTTCCTCCCTCTTTTTTTCAATGTTTTCTCAACTAAGTCATTCGTTCTCAAAGATAACAGCAAATTTTATAAAAACAGTTATTTCAGCACTGGTCAAATTCCTGCAGCTTCATTTTGCCRTTGGATTTGCACACTGCCTAACGATGAACGATCCACCATTAGGAAGGTCGCAAGTGCCTTCCAATTCGAGGACCCAGCCAATGAACCAAATGGAACAGCTTTTGCAGTTGAGGAAAACGCTAGAGGTTTGTCAGAGCACTGGAAAAAGCTTGATGGACGACGTGGATGAGAAGATCTCTATTGTGAAACTCTCGGAAGATGTCGAGAAGCTTCATGGTCAGATTTCAAACGTGTCTTCCGAGGTGAATTCAATTAATACTCGAACCGGGTCAATGGAGTCGGTGCTGGAGAAACTTCTTGAGAATTCGAACAAAACTTTGGAGAATCATTCGAGTCTGGAAGCAACAATCACCAAGTCGAATGCCGATGTTGAAGCCATCAAACAACATATTCAAATGTTTGATTCACACAATTTTCAAGAAAAGTACTCGAGAATAGAGCAAGCTGTTATCACGTCAGCAGGCGGTATCGAAAAAATCAATCAACATTTGGAAGCGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCAATGTTTTCTCAACTAAG</pcr_primer_p1>
		<pcr_primer_p2>CAGTGCTCTGACAAACCTCTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCAATGTTTTCTCAACTAAGTCATTCGTTCTCAAAGATAACAGCAAATTTTATAAAAACAGTTATTTCAGCACTGGTCAAATTCCTGCAGCTTCATTTTGCCGTTGGATTTGCACACTGCCTAACGATGAACGATCCACCATTAGGAAGGTCGCAAGTGCCTTCCAATTCGAGGACCCAGCCAATGAACCAAATGGAACAGCTTTTGCAGTTGAGGAAAACGCTAGAGGTTTGTCAGAGCACTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCAATGTTTTCTCAACTAAGTCATTCGTTCTCAAAGATAACAGCAAATTTTATAAAAACAGTTATTTCAGCACTGGTCAAATTCCTGCAGCTTCATTTTGCCRTTGGATTTGCACACTGCCTAACGATGAACGATCCACCATTAGGAAGGTCGCAAGTGCCTTCCAATTCGAGGACCCAGCCAATGAACCAAATGGAACAGCTTTTGCAGTTGAGGAAAACGCTAGAGGTTTGTCAGAGCACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6046</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>426366</contig_pos>
        <strand>+</strand>
        <context>AAGGTCGCAA[C/G]TGCCTTCCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GATTTGCACACTGCCTAACGATGAACGATCCACCATTAGGAAGGTCGCAA</left_flank>
        <right_flank>TGCCTTCCAATTCGAGGACCCAGCCAATGAACCAAATGGAACAGCTTTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCGTATCCTACCTATCACAGAAGTGTCCTATCTAAAACGCAGCAGCCGTCCGTAACCCAGCCTTGGTGAAAACGAAGAGCTCCTTTGGAAAACTTATTAAAAGAATGATGACGATAATCTTCTTTGACCTTGATTAGAGCACTAATCTTTTTTTTTTCTCACCTAGACATCTAACTATTCACCTCCCCAATTTCTTCTCCCATATTTCCTTATGGTTCGTCTTTCTATTCAGTATTTTCTTGCTCTTTTCGGAATAGACTTTCGTGGTCCAAATAGAACAAATGTTTTAAATAGTCCATCACATTATACGTGTCTTCTCTTTTTTTTTCCTCCCTCTTTTTTTCAATGTTTTCTCAACTAAGTCATTCGTTCTCAAAGATAACAGCAAATTTTATAAAAACAGTTATTTCAGCACTGGTCAAATTCCTGCAGCTTCATTTTGCCGTTGGATTTGCACACTGCCTAACGATGAACGATCCACCATTAGGAAGGTCGCAAGTGCCTTCCAATTCGAGGACCCAGCCAATGAACCAAATGGAACAGCTTTTGCAGTTGAGGAAAACGCTAGAGGTTTGTCAGAGCACTGGAAAAAGCTTGATGGACGACGTGGATGAGAAGATCTCTATTGTGAAACTCTCGGAAGATGTCGAGAAGCTTCATGGTCAGATTTCAAACGTGTCTTCCGAGGTGAATTCAATTAATACTCGAACCGGGTCAATGGAGTCGGTGCTGGAGAAACTTCTTGAGAATTCGAACAAAACTTTGGAGAATCATTCGAGTCTGGAAGCAACAATCACCAAGTCGAATGCCGATGTTGAAGCCATCAAACAACATATTCAAATGTTTGATTCACACAATTTTCAAGAAAAGTACTCGAGAATAGAGCAAGCTGTTATCACGTCAGCAGGCGGTATCGAAAAAATCAATCAACATTTGGAAGCGTTTGATTCGAATAAAATCCTTGAAAAACAATCGAGTTTGGAACAAACAGTCATCAAT</canonical>
            <polymorphic>GTCGTATCCTACCTATCACAGAAGTGTCCTATCTAAAACGCAGCAGCCGTCCGTAACCCAGCCTTGGTGAAAACGAAGAGCTCCTTTGGAAAACTTATTAAAAGAATGATGACGATAATCTTCTTTGACCTTGATTAGAGCACTAATCTTTTTTTTTTCTCACCTAGACATCTAACTATTCACCTCCCCAATTTCTTCTCCCATATTTCCTTATGGTTCGTCTTTCTATTCAGTATTTTCTTGCTCTTTTCGGAATAGACTTTCGTGGTCCAAATAGAACAAATGTTTTAAATAGTCCATCACATTATACGTGTCTTCTCTTTTTTTTTCCTCCCTCTTTTTTTCAATGTTTTCTCAACTAAGTCATTCGTTCTCAAAGATAACAGCAAATTTTATAAAAACAGTTATTTCAGCACTGGTCAAATTCCTGCAGCTTCATTTTGCCGTTGGATTTGCACACTGCCTAACGATGAACGATCCACCATTAGGAAGGTCGCAASTGCCTTCCAATTCGAGGACCCAGCCAATGAACCAAATGGAACAGCTTTTGCAGTTGAGGAAAACGCTAGAGGTTTGTCAGAGCACTGGAAAAAGCTTGATGGACGACGTGGATGAGAAGATCTCTATTGTGAAACTCTCGGAAGATGTCGAGAAGCTTCATGGTCAGATTTCAAACGTGTCTTCCGAGGTGAATTCAATTAATACTCGAACCGGGTCAATGGAGTCGGTGCTGGAGAAACTTCTTGAGAATTCGAACAAAACTTTGGAGAATCATTCGAGTCTGGAAGCAACAATCACCAAGTCGAATGCCGATGTTGAAGCCATCAAACAACATATTCAAATGTTTGATTCACACAATTTTCAAGAAAAGTACTCGAGAATAGAGCAAGCTGTTATCACGTCAGCAGGCGGTATCGAAAAAATCAATCAACATTTGGAAGCGTTTGATTCGAATAAAATCCTTGAAAAACAATCGAGTTTGGAACAAACAGTCATCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>102 101 85 82 73 67 56 48 44 43 42 39 35 26 22 21 21 20 20 18 12 11 8 2 2</canonical_bands>
                <polymorphic_bands>103 102 101 85 73 67 56 48 44 43 42 39 35 26 22 21 20 20 18 12 11 8 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACAGTTATTTCAGCACTGGT</pcr_primer_p1>
		<pcr_primer_p2>CCGAGAGTTTCACAATAGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAACAGTTATTTCAGCACTGGTCAAATTCCTGCAGCTTCATTTTGCCGTTGGATTTGCACACTGCCTAACGATGAACGATCCACCATTAGGAAGGTCGCAAGTGCCTTCCAATTCGAGGACCCAGCCAATGAACCAAATGGAACAGCTTTTGCAGTTGAGGAAAACGCTAGAGGTTTGTCAGAGCACTGGAAAAAGCTTGATGGACGACGTGGATGAGAAGATCTCTATTGTGAAACTCTCGG</canonical_amplicon>
		<polymorphic_amplicon>AAACAGTTATTTCAGCACTGGTCAAATTCCTGCAGCTTCATTTTGCCGTTGGATTTGCACACTGCCTAACGATGAACGATCCACCATTAGGAAGGTCGCAASTGCCTTCCAATTCGAGGACCCAGCCAATGAACCAAATGGAACAGCTTTTGCAGTTGAGGAAAACGCTAGAGGTTTGTCAGAGCACTGGAAAAAGCTTGATGGACGACGTGGATGAGAAGATCTCTATTGTGAAACTCTCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6047</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>426510</contig_pos>
        <strand>+</strand>
        <context>ACTCTCGGAA[A/G]ATGTCGAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTTGATGGACGACGTGGATGAGAAGATCTCTATTGTGAAACTCTCGGAA</left_flank>
        <right_flank>ATGTCGAGAAGCTTCATGGTCAGATTTCAAACGTGTCTTCCGAGGTGAAT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCTTTTTTTTTTCTCACCTAGACATCTAACTATTCACCTCCCCAATTTCTTCTCCCATATTTCCTTATGGTTCGTCTTTCTATTCAGTATTTTCTTGCTCTTTTCGGAATAGACTTTCGTGGTCCAAATAGAACAAATGTTTTAAATAGTCCATCACATTATACGTGTCTTCTCTTTTTTTTTCCTCCCTCTTTTTTTCAATGTTTTCTCAACTAAGTCATTCGTTCTCAAAGATAACAGCAAATTTTATAAAAACAGTTATTTCAGCACTGGTCAAATTCCTGCAGCTTCATTTTGCCGTTGGATTTGCACACTGCCTAACGATGAACGATCCACCATTAGGAAGGTCGCAAGTGCCTTCCAATTCGAGGACCCAGCCAATGAACCAAATGGAACAGCTTTTGCAGTTGAGGAAAACGCTAGAGGTTTGTCAGAGCACTGGAAAAAGCTTGATGGACGACGTGGATGAGAAGATCTCTATTGTGAAACTCTCGGAAGATGTCGAGAAGCTTCATGGTCAGATTTCAAACGTGTCTTCCGAGGTGAATTCAATTAATACTCGAACCGGGTCAATGGAGTCGGTGCTGGAGAAACTTCTTGAGAATTCGAACAAAACTTTGGAGAATCATTCGAGTCTGGAAGCAACAATCACCAAGTCGAATGCCGATGTTGAAGCCATCAAACAACATATTCAAATGTTTGATTCACACAATTTTCAAGAAAAGTACTCGAGAATAGAGCAAGCTGTTATCACGTCAGCAGGCGGTATCGAAAAAATCAATCAACATTTGGAAGCGTTTGATTCGAATAAAATCCTTGAAAAACAATCGAGTTTGGAACAAACAGTCATCAATTCAACCTGTGTTGTCCAAGAAATCAAACATCAATTGGAAGCGAAGGCGATTTCGGATGAAGCTGATTTGCGCAAACTGATGGAAATGCAAAATCGGAAGCTAGAAGAACATAAGAACGAAATTGTCACTGCAATCAATGAAATC</canonical>
            <polymorphic>AATCTTTTTTTTTTCTCACCTAGACATCTAACTATTCACCTCCCCAATTTCTTCTCCCATATTTCCTTATGGTTCGTCTTTCTATTCAGTATTTTCTTGCTCTTTTCGGAATAGACTTTCGTGGTCCAAATAGAACAAATGTTTTAAATAGTCCATCACATTATACGTGTCTTCTCTTTTTTTTTCCTCCCTCTTTTTTTCAATGTTTTCTCAACTAAGTCATTCGTTCTCAAAGATAACAGCAAATTTTATAAAAACAGTTATTTCAGCACTGGTCAAATTCCTGCAGCTTCATTTTGCCGTTGGATTTGCACACTGCCTAACGATGAACGATCCACCATTAGGAAGGTCGCAAGTGCCTTCCAATTCGAGGACCCAGCCAATGAACCAAATGGAACAGCTTTTGCAGTTGAGGAAAACGCTAGAGGTTTGTCAGAGCACTGGAAAAAGCTTGATGGACGACGTGGATGAGAAGATCTCTATTGTGAAACTCTCGGAARATGTCGAGAAGCTTCATGGTCAGATTTCAAACGTGTCTTCCGAGGTGAATTCAATTAATACTCGAACCGGGTCAATGGAGTCGGTGCTGGAGAAACTTCTTGAGAATTCGAACAAAACTTTGGAGAATCATTCGAGTCTGGAAGCAACAATCACCAAGTCGAATGCCGATGTTGAAGCCATCAAACAACATATTCAAATGTTTGATTCACACAATTTTCAAGAAAAGTACTCGAGAATAGAGCAAGCTGTTATCACGTCAGCAGGCGGTATCGAAAAAATCAATCAACATTTGGAAGCGTTTGATTCGAATAAAATCCTTGAAAAACAATCGAGTTTGGAACAAACAGTCATCAATTCAACCTGTGTTGTCCAAGAAATCAAACATCAATTGGAAGCGAAGGCGATTTCGGATGAAGCTGATTTGCGCAAACTGATGGAAATGCAAAATCGGAAGCTAGAAGAACATAAGAACGAAATTGTCACTGCAATCAATGAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACGCTAGAGGTTTGTCA</pcr_primer_p1>
		<pcr_primer_p2>CATTCGACTTGGTGATTGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAACGCTAGAGGTTTGTCAGAGCACTGGAAAAAGCTTGATGGACGACGTGGATGAGAAGATCTCTATTGTGAAACTCTCGGAAGATGTCGAGAAGCTTCATGGTCAGATTTCAAACGTGTCTTCCGAGGTGAATTCAATTAATACTCGAACCGGGTCAATGGAGTCGGTGCTGGAGAAACTTCTTGAGAATTCGAACAAAACTTTGGAGAATCATTCGAGTCTGGAAGCAACAATCACCAAGTCGAATG</canonical_amplicon>
		<polymorphic_amplicon>AAAACGCTAGAGGTTTGTCAGAGCACTGGAAAAAGCTTGATGGACGACGTGGATGAGAAGATCTCTATTGTGAAACTCTCGGAARATGTCGAGAAGCTTCATGGTCAGATTTCAAACGTGTCTTCCGAGGTGAATTCAATTAATACTCGAACCGGGTCAATGGAGTCGGTGCTGGAGAAACTTCTTGAGAATTCGAACAAAACTTTGGAGAATCATTCGAGTCTGGAAGCAACAATCACCAAGTCGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6048</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>426554</contig_pos>
        <strand>+</strand>
        <context>TGTCTTCCGA[G/T]GTGAATTCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGGAAGATGTCGAGAAGCTTCATGGTCAGATTTCAAACGTGTCTTCCGA</left_flank>
        <right_flank>GTGAATTCAATTAATACTCGAACCGGGTCAATGGAGTCGGTGCTGGAGAA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATTTCTTCTCCCATATTTCCTTATGGTTCGTCTTTCTATTCAGTATTTTCTTGCTCTTTTCGGAATAGACTTTCGTGGTCCAAATAGAACAAATGTTTTAAATAGTCCATCACATTATACGTGTCTTCTCTTTTTTTTTCCTCCCTCTTTTTTTCAATGTTTTCTCAACTAAGTCATTCGTTCTCAAAGATAACAGCAAATTTTATAAAAACAGTTATTTCAGCACTGGTCAAATTCCTGCAGCTTCATTTTGCCGTTGGATTTGCACACTGCCTAACGATGAACGATCCACCATTAGGAAGGTCGCAAGTGCCTTCCAATTCGAGGACCCAGCCAATGAACCAAATGGAACAGCTTTTGCAGTTGAGGAAAACGCTAGAGGTTTGTCAGAGCACTGGAAAAAGCTTGATGGACGACGTGGATGAGAAGATCTCTATTGTGAAACTCTCGGAAGATGTCGAGAAGCTTCATGGTCAGATTTCAAACGTGTCTTCCGAGGTGAATTCAATTAATACTCGAACCGGGTCAATGGAGTCGGTGCTGGAGAAACTTCTTGAGAATTCGAACAAAACTTTGGAGAATCATTCGAGTCTGGAAGCAACAATCACCAAGTCGAATGCCGATGTTGAAGCCATCAAACAACATATTCAAATGTTTGATTCACACAATTTTCAAGAAAAGTACTCGAGAATAGAGCAAGCTGTTATCACGTCAGCAGGCGGTATCGAAAAAATCAATCAACATTTGGAAGCGTTTGATTCGAATAAAATCCTTGAAAAACAATCGAGTTTGGAACAAACAGTCATCAATTCAACCTGTGTTGTCCAAGAAATCAAACATCAATTGGAAGCGAAGGCGATTTCGGATGAAGCTGATTTGCGCAAACTGATGGAAATGCAAAATCGGAAGCTAGAAGAACATAAGAACGAAATTGTCACTGCAATCAATGAAATCAGTCAGAATGTGGAGGCATCTCAAGTCAACGAAACTCTTCACTC</canonical>
            <polymorphic>CAATTTCTTCTCCCATATTTCCTTATGGTTCGTCTTTCTATTCAGTATTTTCTTGCTCTTTTCGGAATAGACTTTCGTGGTCCAAATAGAACAAATGTTTTAAATAGTCCATCACATTATACGTGTCTTCTCTTTTTTTTTCCTCCCTCTTTTTTTCAATGTTTTCTCAACTAAGTCATTCGTTCTCAAAGATAACAGCAAATTTTATAAAAACAGTTATTTCAGCACTGGTCAAATTCCTGCAGCTTCATTTTGCCGTTGGATTTGCACACTGCCTAACGATGAACGATCCACCATTAGGAAGGTCGCAAGTGCCTTCCAATTCGAGGACCCAGCCAATGAACCAAATGGAACAGCTTTTGCAGTTGAGGAAAACGCTAGAGGTTTGTCAGAGCACTGGAAAAAGCTTGATGGACGACGTGGATGAGAAGATCTCTATTGTGAAACTCTCGGAAGATGTCGAGAAGCTTCATGGTCAGATTTCAAACGTGTCTTCCGAKGTGAATTCAATTAATACTCGAACCGGGTCAATGGAGTCGGTGCTGGAGAAACTTCTTGAGAATTCGAACAAAACTTTGGAGAATCATTCGAGTCTGGAAGCAACAATCACCAAGTCGAATGCCGATGTTGAAGCCATCAAACAACATATTCAAATGTTTGATTCACACAATTTTCAAGAAAAGTACTCGAGAATAGAGCAAGCTGTTATCACGTCAGCAGGCGGTATCGAAAAAATCAATCAACATTTGGAAGCGTTTGATTCGAATAAAATCCTTGAAAAACAATCGAGTTTGGAACAAACAGTCATCAATTCAACCTGTGTTGTCCAAGAAATCAAACATCAATTGGAAGCGAAGGCGATTTCGGATGAAGCTGATTTGCGCAAACTGATGGAAATGCAAAATCGGAAGCTAGAAGAACATAAGAACGAAATTGTCACTGCAATCAATGAAATCAGTCAGAATGTGGAGGCATCTCAAGTCAACGAAACTCTTCACTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGATGAGAAGATCTCTATTGTG</pcr_primer_p1>
		<pcr_primer_p2>ACATTTGAATATGTTGTTTGATG</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>TGGATGAGAAGATCTCTATTGTGAAACTCTCGGAAGATGTCGAGAAGCTTCATGGTCAGATTTCAAACGTGTCTTCCGAGGTGAATTCAATTAATACTCGAACCGGGTCAATGGAGTCGGTGCTGGAGAAACTTCTTGAGAATTCGAACAAAACTTTGGAGAATCATTCGAGTCTGGAAGCAACAATCACCAAGTCGAATGCCGATGTTGAAGCCATCAAACAACATATTCAAATGT</canonical_amplicon>
		<polymorphic_amplicon>TGGATGAGAAGATCTCTATTGTGAAACTCTCGGAAGATGTCGAGAAGCTTCATGGTCAGATTTCAAACGTGTCTTCCGAKGTGAATTCAATTAATACTCGAACCGGGTCAATGGAGTCGGTGCTGGAGAAACTTCTTGAGAATTCGAACAAAACTTTGGAGAATCATTCGAGTCTGGAAGCAACAATCACCAAGTCGAATGCCGATGTTGAAGCCATCAAACAACATATTCAAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6049</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>429946</contig_pos>
        <strand></strand>
        <context>TYAAAACTAA[C/G]GTCCATAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCTACAAATTCCACGACAATGAGAGTAATGAAACTATTGTTCAAAACTAA</left_flank>
        <right_flank>GTCCATAAGACTGACTAAAACAGTCAATTTGAATTTTCAAGTTTAGTTAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATTTGAAACTTGTTTTTCTCGAAACTGGTAGCTCTTTAGCAAAATCTGAATATAGATTTGAAAATGACTCATTCTCAGCTTTCGAATGATATAGGTCTCATACCGAAGTTCCACCCCGCGATTACAACCTTCCCTAGTAAGAACTCAAATAACGAAGTTCTTAACTTTTACGCCAAAATGGACAAAAATTTATAAGTCAAGCTATTAAAAAGTATTAGCTTGCATTTCTCATTGAATTTTTTCAGCTCAAGTACGGATTGAACTAGAGCAAAGCCCGAGAGCTACTCCAGCGATACATTCAAATATTCCCAGTACCAGTTCGCCGACCCCTGAAGACGCTGAAGCTAATGTAGTAGATGAAAAAGTGGCCGATGCGTCATCAATGGATTTTTCTGACAACAGAAGTTCCGGTGAGATATGAATCAGATAAGATCTAAATCACAATGTCTACAAATTCCACGACAATGAGAGTAATGAAACTATTGTTCAAAACTAACGTCCATAAGACTGACTAAAACAGTCAATTTGAATTTTCAAGTTTAGTTAAACCATTGGTTTTCTTAACGTCGCTTCCCAACGACCCCGAAATACTGAATTTTTAACTTTTACGCCAAAATAAACAAGGAAAACATAATACAATACACCTGGATTTCTTATCAAATTTTTTTCAGCTCAAAAGCCGATTGAACGTGAGGAAACCACTCCAGGAATTTCTTCAAATTATTCAGATAGCGTTTCGACCGCCCCCGAGGCTAAAGCTATTGTAGTAGATAAAGAAAGGACCGATGCACCAATAATGGATTCTTCTGACCACCGAACTGATGAACTTCCTCATAATCAACCGGCTATAGGAAATGAACTTTATGATTTTGAAGCTCAACACAAAGATCTTGATGCGATGCCAGAAAAAGAAGAAGGCGGCGTTCAACGAGAAGAGGTCGTCATTCAAATGGAGAATGATCAAGACCCCGTGGAAGATTCTGAGGAATTTTTTGTG</canonical>
            <polymorphic>AAAATTTGAAACTTGTTTTTCTCGAAACTGGTAGCTCTTTAGCAAAATCTGAATATAGATTTGAAAATGACTCATTCTCAGCTTTCGAATGATATAGGTCTCATACCGAAGTTCCACCCCGCGATTACAACCTTCCCTAGTAAGAACTCAAATAACGAAGTTCTTAACTTTTACGCCAAAATGGACAAAAATTTATAAGTCAAGCTATTAAAAAGTATTAGCTTGCATTTCTCATTGAATTTTTTCAGCTCAAGTACGGATTGAACTAGAGCAAAGCCCGAGAGCTACTCCAGCGATACATTCAAATATTCCCAGTACCAGTTCGCCGACCCCTGAAGACGCTGAAGCTAATGTAGTAGATGAAAAAGTGGCCGATGCGTCATCAATGGATTTTTCTGACAACAGAAGTTCCGGTGAGATATGAATCAGATAAGATCTAAATCACAATGTCTACAAATTCCACGACAATGAGAGTAATGAAACTATTGTTCAAAACTAASGTCCATAAGACTGACTAAAACAGTCAATTTGAATTTTCAAGTTTAGTTAAACCATTGGTTTTCTTAACGTCGCTTCCCAACGACCCCGAAATACTGAATTTTTAACTTTTACGCCAAAATAAACAAGGAAAACATAATACAATACACCTGGATTTCTTATCAAATTTTTTTCAGCTCAAAAGCCGATTGAACGTGAGGAAACCACTCCAGGAATTTCTTCAAATTATTCAGATAGCGTTTCGACCGCCCCCGAGGCTAAAGCTATTGTAGTAGATAAAGAAAGGACCGATGCACCAATAATGGATTCTTCTGACCACCGAACTGATGAACTTCCTCATAATCAACCGGCTATAGGAAATGAACTTTATGATTTTGAAGCTCAACACAAAGATCTTGATGCGATGCCAGAAAAAGAAGAAGGCGGCGTTCAACGAGAAGAGGTCGTCATTCAAATGGAGAATGATCAAGACCCCGTGGAAGATTCTGAGGAATTTTTTGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>499 309 124 68</canonical_bands>
                <polymorphic_bands>567 309 124</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGTGAGATATGAATCAGATAAG</pcr_primer_p1>
		<pcr_primer_p2>GATAAGAAATCCAGGTGTATTGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGGTGAGATATGAATCAGATAAGATCTAAATCACAATGTCTACAAATTCCACGACAATGAGAGTAATGAAACTATTGTTCAAAACTAACGTCCATAAGACTGACTAAAACAGTCAATTTGAATTTTCAAGTTTAGTTAAACCATTGGTTTTCTTAACGTCGCTTCCCAACGACCCCGAAATACTGAATTTTTAACTTTTACGCCAAAATAAACAAGGAAAACATAATACAATACACCTGGATTTCTTATC</canonical_amplicon>
		<polymorphic_amplicon>CGGTGAGATATGAATCAGATAAGATCTAAATCACAATGTCTACAAATTCCACGACAATGAGAGTAATGAAACTATTGTTCAAAACTAASGTCCATAAGACTGACTAAAACAGTCAATTTGAATTTTCAAGTTTAGTTAAACCATTGGTTTTCTTAACGTCGCTTCCCAACGACCCCGAAATACTGAATTTTTAACTTTTACGCCAAAATAAACAAGGAAAACATAATACAATACACCTGGATTTCTTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6050</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>429937</contig_pos>
        <strand></strand>
        <context>AACTWTTGTT[C/T]AAAACTAASG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCACAATGTCTACAAATTCCACGACAATGAGAGTAATGAAACTATTGTT</left_flank>
        <right_flank>AAAACTAACGTCCATAAGACTGACTAAAACAGTCAATTTGAATTTTCAAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGAGCCAAAATTTGAAACTTGTTTTTCTCGAAACTGGTAGCTCTTTAGCAAAATCTGAATATAGATTTGAAAATGACTCATTCTCAGCTTTCGAATGATATAGGTCTCATACCGAAGTTCCACCCCGCGATTACAACCTTCCCTAGTAAGAACTCAAATAACGAAGTTCTTAACTTTTACGCCAAAATGGACAAAAATTTATAAGTCAAGCTATTAAAAAGTATTAGCTTGCATTTCTCATTGAATTTTTTCAGCTCAAGTACGGATTGAACTAGAGCAAAGCCCGAGAGCTACTCCAGCGATACATTCAAATATTCCCAGTACCAGTTCGCCGACCCCTGAAGACGCTGAAGCTAATGTAGTAGATGAAAAAGTGGCCGATGCGTCATCAATGGATTTTTCTGACAACAGAAGTTCCGGTGAGATATGAATCAGATAAGATCTAAATCACAATGTCTACAAATTCCACGACAATGAGAGTAATGAAACTATTGTTCAAAACTAACGTCCATAAGACTGACTAAAACAGTCAATTTGAATTTTCAAGTTTAGTTAAACCATTGGTTTTCTTAACGTCGCTTCCCAACGACCCCGAAATACTGAATTTTTAACTTTTACGCCAAAATAAACAAGGAAAACATAATACAATACACCTGGATTTCTTATCAAATTTTTTTCAGCTCAAAAGCCGATTGAACGTGAGGAAACCACTCCAGGAATTTCTTCAAATTATTCAGATAGCGTTTCGACCGCCCCCGAGGCTAAAGCTATTGTAGTAGATAAAGAAAGGACCGATGCACCAATAATGGATTCTTCTGACCACCGAACTGATGAACTTCCTCATAATCAACCGGCTATAGGAAATGAACTTTATGATTTTGAAGCTCAACACAAAGATCTTGATGCGATGCCAGAAAAAGAAGAAGGCGGCGTTCAACGAGAAGAGGTCGTCATTCAAATGGAGAATGATCAAGACCCCGTGGAAGATTCTGAGGAA</canonical>
            <polymorphic>ATTTGAGCCAAAATTTGAAACTTGTTTTTCTCGAAACTGGTAGCTCTTTAGCAAAATCTGAATATAGATTTGAAAATGACTCATTCTCAGCTTTCGAATGATATAGGTCTCATACCGAAGTTCCACCCCGCGATTACAACCTTCCCTAGTAAGAACTCAAATAACGAAGTTCTTAACTTTTACGCCAAAATGGACAAAAATTTATAAGTCAAGCTATTAAAAAGTATTAGCTTGCATTTCTCATTGAATTTTTTCAGCTCAAGTACGGATTGAACTAGAGCAAAGCCCGAGAGCTACTCCAGCGATACATTCAAATATTCCCAGTACCAGTTCGCCGACCCCTGAAGACGCTGAAGCTAATGTAGTAGATGAAAAAGTGGCCGATGCGTCATCAATGGATTTTTCTGACAACAGAAGTTCCGGTGAGATATGAATCAGATAAGATCTAAATCACAATGTCTACAAATTCCACGACAATGAGAGTAATGAAACTATTGTTYAAAACTAACGTCCATAAGACTGACTAAAACAGTCAATTTGAATTTTCAAGTTTAGTTAAACCATTGGTTTTCTTAACGTCGCTTCCCAACGACCCCGAAATACTGAATTTTTAACTTTTACGCCAAAATAAACAAGGAAAACATAATACAATACACCTGGATTTCTTATCAAATTTTTTTCAGCTCAAAAGCCGATTGAACGTGAGGAAACCACTCCAGGAATTTCTTCAAATTATTCAGATAGCGTTTCGACCGCCCCCGAGGCTAAAGCTATTGTAGTAGATAAAGAAAGGACCGATGCACCAATAATGGATTCTTCTGACCACCGAACTGATGAACTTCCTCATAATCAACCGGCTATAGGAAATGAACTTTATGATTTTGAAGCTCAACACAAAGATCTTGATGCGATGCCAGAAAAAGAAGAAGGCGGCGTTCAACGAGAAGAGGTCGTCATTCAAATGGAGAATGATCAAGACCCCGTGGAAGATTCTGAGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTGAGATATGAATCAGATAAG</pcr_primer_p1>
		<pcr_primer_p2>GATAAGAAATCCAGGTGTATTGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGGTGAGATATGAATCAGATAAGATCTAAATCACAATGTCTACAAATTCCACGACAATGAGAGTAATGAAACTATTGTTCAAAACTAACGTCCATAAGACTGACTAAAACAGTCAATTTGAATTTTCAAGTTTAGTTAAACCATTGGTTTTCTTAACGTCGCTTCCCAACGACCCCGAAATACTGAATTTTTAACTTTTACGCCAAAATAAACAAGGAAAACATAATACAATACACCTGGATTTCTTATC</canonical_amplicon>
		<polymorphic_amplicon>CGGTGAGATATGAATCAGATAAGATCTAAATCACAATGTCTACAAATTCCACGACAATGAGAGTAATGAAACTATTGTTYAAAACTAACGTCCATAAGACTGACTAAAACAGTCAATTTGAATTTTCAAGTTTAGTTAAACCATTGGTTTTCTTAACGTCGCTTCCCAACGACCCCGAAATACTGAATTTTTAACTTTTACGCCAAAATAAACAAGGAAAACATAATACAATACACCTGGATTTCTTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6051</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>429931</contig_pos>
        <strand></strand>
        <context>TAATGAAACT[A/T]TTGTTYAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCTAAATCACAATGTCTACAAATTCCACGACAATGAGAGTAATGAAACT</left_flank>
        <right_flank>TTGTTCAAAACTAACGTCCATAAGACTGACTAAAACAGTCAATTTGAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTCAAATTTGAGCCAAAATTTGAAACTTGTTTTTCTCGAAACTGGTAGCTCTTTAGCAAAATCTGAATATAGATTTGAAAATGACTCATTCTCAGCTTTCGAATGATATAGGTCTCATACCGAAGTTCCACCCCGCGATTACAACCTTCCCTAGTAAGAACTCAAATAACGAAGTTCTTAACTTTTACGCCAAAATGGACAAAAATTTATAAGTCAAGCTATTAAAAAGTATTAGCTTGCATTTCTCATTGAATTTTTTCAGCTCAAGTACGGATTGAACTAGAGCAAAGCCCGAGAGCTACTCCAGCGATACATTCAAATATTCCCAGTACCAGTTCGCCGACCCCTGAAGACGCTGAAGCTAATGTAGTAGATGAAAAAGTGGCCGATGCGTCATCAATGGATTTTTCTGACAACAGAAGTTCCGGTGAGATATGAATCAGATAAGATCTAAATCACAATGTCTACAAATTCCACGACAATGAGAGTAATGAAACTATTGTTCAAAACTAACGTCCATAAGACTGACTAAAACAGTCAATTTGAATTTTCAAGTTTAGTTAAACCATTGGTTTTCTTAACGTCGCTTCCCAACGACCCCGAAATACTGAATTTTTAACTTTTACGCCAAAATAAACAAGGAAAACATAATACAATACACCTGGATTTCTTATCAAATTTTTTTCAGCTCAAAAGCCGATTGAACGTGAGGAAACCACTCCAGGAATTTCTTCAAATTATTCAGATAGCGTTTCGACCGCCCCCGAGGCTAAAGCTATTGTAGTAGATAAAGAAAGGACCGATGCACCAATAATGGATTCTTCTGACCACCGAACTGATGAACTTCCTCATAATCAACCGGCTATAGGAAATGAACTTTATGATTTTGAAGCTCAACACAAAGATCTTGATGCGATGCCAGAAAAAGAAGAAGGCGGCGTTCAACGAGAAGAGGTCGTCATTCAAATGGAGAATGATCAAGACCCCGTGGAAGATTCT</canonical>
            <polymorphic>GGTCAAATTTGAGCCAAAATTTGAAACTTGTTTTTCTCGAAACTGGTAGCTCTTTAGCAAAATCTGAATATAGATTTGAAAATGACTCATTCTCAGCTTTCGAATGATATAGGTCTCATACCGAAGTTCCACCCCGCGATTACAACCTTCCCTAGTAAGAACTCAAATAACGAAGTTCTTAACTTTTACGCCAAAATGGACAAAAATTTATAAGTCAAGCTATTAAAAAGTATTAGCTTGCATTTCTCATTGAATTTTTTCAGCTCAAGTACGGATTGAACTAGAGCAAAGCCCGAGAGCTACTCCAGCGATACATTCAAATATTCCCAGTACCAGTTCGCCGACCCCTGAAGACGCTGAAGCTAATGTAGTAGATGAAAAAGTGGCCGATGCGTCATCAATGGATTTTTCTGACAACAGAAGTTCCGGTGAGATATGAATCAGATAAGATCTAAATCACAATGTCTACAAATTCCACGACAATGAGAGTAATGAAACTWTTGTTCAAAACTAACGTCCATAAGACTGACTAAAACAGTCAATTTGAATTTTCAAGTTTAGTTAAACCATTGGTTTTCTTAACGTCGCTTCCCAACGACCCCGAAATACTGAATTTTTAACTTTTACGCCAAAATAAACAAGGAAAACATAATACAATACACCTGGATTTCTTATCAAATTTTTTTCAGCTCAAAAGCCGATTGAACGTGAGGAAACCACTCCAGGAATTTCTTCAAATTATTCAGATAGCGTTTCGACCGCCCCCGAGGCTAAAGCTATTGTAGTAGATAAAGAAAGGACCGATGCACCAATAATGGATTCTTCTGACCACCGAACTGATGAACTTCCTCATAATCAACCGGCTATAGGAAATGAACTTTATGATTTTGAAGCTCAACACAAAGATCTTGATGCGATGCCAGAAAAAGAAGAAGGCGGCGTTCAACGAGAAGAGGTCGTCATTCAAATGGAGAATGATCAAGACCCCGTGGAAGATTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTGAGATATGAATCAGATAAG</pcr_primer_p1>
		<pcr_primer_p2>GATAAGAAATCCAGGTGTATTGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGGTGAGATATGAATCAGATAAGATCTAAATCACAATGTCTACAAATTCCACGACAATGAGAGTAATGAAACTATTGTTCAAAACTAACGTCCATAAGACTGACTAAAACAGTCAATTTGAATTTTCAAGTTTAGTTAAACCATTGGTTTTCTTAACGTCGCTTCCCAACGACCCCGAAATACTGAATTTTTAACTTTTACGCCAAAATAAACAAGGAAAACATAATACAATACACCTGGATTTCTTATC</canonical_amplicon>
		<polymorphic_amplicon>CGGTGAGATATGAATCAGATAAGATCTAAATCACAATGTCTACAAATTCCACGACAATGAGAGTAATGAAACTWTTGTTCAAAACTAACGTCCATAAGACTGACTAAAACAGTCAATTTGAATTTTCAAGTTTAGTTAAACCATTGGTTTTCTTAACGTCGCTTCCCAACGACCCCGAAATACTGAATTTTTAACTTTTACGCCAAAATAAACAAGGAAAACATAATACAATACACCTGGATTTCTTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6056</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>434211</contig_pos>
        <strand></strand>
        <context>TTTTCTCAGA[G/T]TTCAAAATAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACCAGAAGACTTTCTAATTTATTTTAAATAGCGTGCTTCTTTTTCTCAGA</left_flank>
        <right_flank>TTCAAAATATGTATTAAAAATTTTAGATCAATTTTCGAATGAAAAAGTAC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGAGATTCCATTTCCAACATTGTGAGCTAAAATATTCGTTTCTTCATTCCAAAAATGTTTTCACCAAAGTTCACAAATTTCCAAAAACGTGTGAATTGTTCATGACTTTTCCCCCGATTCTCTTTTACTATTTACCACTCATTGTTTCTCATGATCCCCGCTATCCACTATATCTGAAGAGCAATTTTAATGGTTTTCTGATTTCTGTCGGTCAAAAATATCCATTTTCGTAGTTCTTACAAATTGTTCATCGACATCTCTATTTTCAAAAAGCGCGTACCATTTTTTATGTCCTCGATTCTCTCCAACTGTTTACCTCCATCGTTTTTGTTTATAAGAAGCAGCCCTCACACATAAGCTATCCAATTGTCACAAAAATATCTCAATAAATTTTTTTCGAGAAGAAATAATTGGTTTTTGTTATTCATTTAAAAAAGTTTGATTATAACCAGAAGACTTTCTAATTTATTTTAAATAGCGTGCTTCTTTTTCTCAGAGTTCAAAATATGTATTAAAAATTTTAGATCAATTTTCGAATGAAAAAGTACCCGGGACCATGTCTATCAGATTTCACAAGCCGCGTATTTTGAATAAGTGGATAGTGCGCCTATAGCGCCAATCCGTCGCTCGACTTCGCAGTTTTTGCAAACGAATGTTCTTCTGTTGTGACGAGAAGATGCACACATTTCATTATTGCGCAAGCGCAGTTGTCGTCCATAGGTGAGAGAGCGGAGAGTGTGAGAGTTATGACAGAACGACGATCCTGTGGAAATTTTGATTTAAATATAGACATTTCCGGAAAGTGTTCAATTCATTCTTATCCAAAATGCTGAGGTCAACCGCGTCTTTGTGAAACCGGAGAGACACGCTGAAAAGAAAAGAAACCCCACTCCACTTGTTTACTATTAAAAAAAAGATGATTATCTCTTTTGACCTTCCGAAGAGCACTATTCTTGGTGTTCTTCCTACACCACTCAGATCTAGATAGGTAACAACCA</canonical>
            <polymorphic>TCTGAGATTCCATTTCCAACATTGTGAGCTAAAATATTCGTTTCTTCATTCCAAAAATGTTTTCACCAAAGTTCACAAATTTCCAAAAACGTGTGAATTGTTCATGACTTTTCCCCCGATTCTCTTTTACTATTTACCACTCATTGTTTCTCATGATCCCCGCTATCCACTATATCTGAAGAGCAATTTTAATGGTTTTCTGATTTCTGTCGGTCAAAAATATCCATTTTCGTAGTTCTTACAAATTGTTCATCGACATCTCTATTTTCAAAAAGCGCGTACCATTTTTTATGTCCTCGATTCTCTCCAACTGTTTACCTCCATCGTTTTTGTTTATAAGAAGCAGCCCTCACACATAAGCTATCCAATTGTCACAAAAATATCTCAATAAATTTTTTTCGAGAAGAAATAATTGGTTTTTGTTATTCATTTAAAAAAGTTTGATTATAACCAGAAGACTTTCTAATTTATTTTAAATAGCGTGCTTCTTTTTCTCAGAKTTCAAAATATGTATTAAAAATTTTAGATCAATTTTCGAATGAAAAAGTACCCGGGACCATGTCTATCAGATTTCACAAGCCGCGTATTTTGAATAAGTGGATAGTGCGCCTATAGCGCCAATCCGTCGCTCGACTTCGCAGTTTTTGCAAACGAATGTTCTTCTGTTGTGACGAGAAGATGCACACATTTCATTATTGCGCAAGCGCAGTTGTCGTCCATAGGTGAGAGAGCGGAGAGTGTGAGAGTTATGACAGAACGACGATCCTGTGGAAATTTTGATTTAAATATAGACATTTCCGGAAAGTGTTCAATTCATTCTTATCCAAAATGCTGAGGTCAACCGCGTCTTTGTGAAACCGGAGAGACACGCTGAAAAGAAAAGAAACCCCACTCCACTTGTTTACTATTAAAAAAAAGATGATTATCTCTTTTGACCTTCCGAAGAGCACTATTCTTGGTGTTCTTCCTACACCACTCAGATCTAGATAGGTAACAACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTGTCACAAAAATATCTCAA</pcr_primer_p1>
		<pcr_primer_p2>TATAGGCGCACTATCCACTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAATTGTCACAAAAATATCTCAATAAATTTTTTTCGAGAAGAAATAATTGGTTTTTGTTATTCATTTAAAAAAGTTTGATTATAACCAGAAGACTTTCTAATTTATTTTAAATAGCGTGCTTCTTTTTCTCAGAGTTCAAAATATGTATTAAAAATTTTAGATCAATTTTCGAATGAAAAAGTACCCGGGACCATGTCTATCAGATTTCACAAGCCGCGTATTTTGAATAAGTGGATAGTGCGCCTATA</canonical_amplicon>
		<polymorphic_amplicon>CAATTGTCACAAAAATATCTCAATAAATTTTTTTCGAGAAGAAATAATTGGTTTTTGTTATTCATTTAAAAAAGTTTGATTATAACCAGAAGACTTTCTAATTTATTTTAAATAGCGTGCTTCTTTTTCTCAGAKTTCAAAATATGTATTAAAAATTTTAGATCAATTTTCGAATGAAAAAGTACCCGGGACCATGTCTATCAGATTTCACAAGCCGCGTATTTTGAATAAGTGGATAGTGCGCCTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6108</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>434484</contig_pos>
        <strand></strand>
        <context>ATCCTGTGGA[A/T]ATTTTGATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGAGAGAGCGGAGAGTGTGAGAGTTATGACAGAACGACGATCCTGTGGA</left_flank>
        <right_flank>ATTTTGATTTAAATATAGACATTTCCGGAAAGTGTTCAATTCATTCTTAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCGCGTACCATTTTTTATGTCCTCGATTCTCTCCAACTGTTTACCTCCATCGTTTTTGTTTATAAGAAGCAGCCCTCACACATAAGCTATCCAATTGTCACAAAAATATCTCAATAAATTTTTTTCGAGAAGAAATAATTGGTTTTTGTTATTCATTTAAAAAAGTTTGATTATAACCAGAAGACTTTCTAATTTATTTTAAATAGCGTGCTTCTTTTTCTCAGAGTTCAAAATATGTATTAAAAATTTTAGATCAATTTTCGAATGAAAAAGTACCCGGGACCATGTCTATCAGATTTCACAAGCCGCGTATTTTGAATAAGTGGATAGTGCGCCTATAGCGCCAATCCGTCGCTCGACTTCGCAGTTTTTGCAAACGAATGTTCTTCTGTTGTGACGAGAAGATGCACACATTTCATTATTGCGCAAGCGCAGTTGTCGTCCATAGGTGAGAGAGCGGAGAGTGTGAGAGTTATGACAGAACGACGATCCTGTGGAAATTTTGATTTAAATATAGACATTTCCGGAAAGTGTTCAATTCATTCTTATCCAAAATGCTGAGGTCAACCGCGTCTTTGTGAAACCGGAGAGACACGCTGAAAAGAAAAGAAACCCCACTCCACTTGTTTACTATTAAAAAAAAGATGATTATCTCTTTTGACCTTCCGAAGAGCACTATTCTTGGTGTTCTTCCTACACCACTCAGATCTAGATAGGTAACAACCACATTGTAGTCTAATACACATTATATTTGTTTATTAAAAAAATAGTGGGTGATTGTCTCTTTTGACCTACCCGAGAGCGCTAATTTTCTTATTTTTCCTATGCTATTCTGACGTCTTAATTGGTCCCGTCTACAATGTAGTCTCATTCAGTACTCCTAGCATTCTTATTGATTTGTCTCTCTATTATGTTTTTTACCTCGTTTTTTTTTCGATCTTTTCCCGCTCTTTTTGGTATAGATTGTCGCGGTCCGAGTAAAAATTTATTGAAAAAAAT</canonical>
            <polymorphic>AGCGCGTACCATTTTTTATGTCCTCGATTCTCTCCAACTGTTTACCTCCATCGTTTTTGTTTATAAGAAGCAGCCCTCACACATAAGCTATCCAATTGTCACAAAAATATCTCAATAAATTTTTTTCGAGAAGAAATAATTGGTTTTTGTTATTCATTTAAAAAAGTTTGATTATAACCAGAAGACTTTCTAATTTATTTTAAATAGCGTGCTTCTTTTTCTCAGAGTTCAAAATATGTATTAAAAATTTTAGATCAATTTTCGAATGAAAAAGTACCCGGGACCATGTCTATCAGATTTCACAAGCCGCGTATTTTGAATAAGTGGATAGTGCGCCTATAGCGCCAATCCGTCGCTCGACTTCGCAGTTTTTGCAAACGAATGTTCTTCTGTTGTGACGAGAAGATGCACACATTTCATTATTGCGCAAGCGCAGTTGTCGTCCATAGGTGAGAGAGCGGAGAGTGTGAGAGTTATGACAGAACGACGATCCTGTGGAWATTTTGATTTAAATATAGACATTTCCGGAAAGTGTTCAATTCATTCTTATCCAAAATGCTGAGGTCAACCGCGTCTTTGTGAAACCGGAGAGACACGCTGAAAAGAAAAGAAACCCCACTCCACTTGTTTACTATTAAAAAAAAGATGATTATCTCTTTTGACCTTCCGAAGAGCACTATTCTTGGTGTTCTTCCTACACCACTCAGATCTAGATAGGTAACAACCACATTGTAGTCTAATACACATTATATTTGTTTATTAAAAAAATAGTGGGTGATTGTCTCTTTTGACCTACCCGAGAGCGCTAATTTTCTTATTTTTCCTATGCTATTCTGACGTCTTAATTGGTCCCGTCTACAATGTAGTCTCATTCAGTACTCCTAGCATTCTTATTGATTTGTCTCTCTATTATGTTTTTTACCTCGTTTTTTTTTCGATCTTTTCCCGCTCTTTTTGGTATAGATTGTCGCGGTCCGAGTAAAAATTTATTGAAAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>484 254 128 117 17</canonical_bands>
                <polymorphic_bands>738 128 117 17</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>270 243 140 93 54 54 38 36 24 20 17 11</canonical_bands>
                <polymorphic_bands>281 270 140 93 54 54 36 24 20 17 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAGATGCACACATTTCATTAT</pcr_primer_p1>
		<pcr_primer_p2>TTTAATAGTAAACAAGTGGAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AGAAGATGCACACATTTCATTATTGCGCAAGCGCAGTTGTCGTCCATAGGTGAGAGAGCGGAGAGTGTGAGAGTTATGACAGAACGACGATCCTGTGGAAATTTTGATTTAAATATAGACATTTCCGGAAAGTGTTCAATTCATTCTTATCCAAAATGCTGAGGTCAACCGCGTCTTTGTGAAACCGGAGAGACACGCTGAAAAGAAAAGAAACCCCACTCCACTTGTTTACTATTAAA</canonical_amplicon>
		<polymorphic_amplicon>AGAAGATGCACACATTTCATTATTGCGCAAGCGCAGTTGTCGTCCATAGGTGAGAGAGCGGAGAGTGTGAGAGTTATGACAGAACGACGATCCTGTGGAWATTTTGATTTAAATATAGACATTTCCGGAAAGTGTTCAATTCATTCTTATCCAAAATGCTGAGGTCAACCGCGTCTTTGTGAAACCGGAGAGACACGCTGAAAAGAAAAGAAACCCCACTCCACTTGTTTACTATTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6109</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>434719</contig_pos>
        <strand></strand>
        <context>CCACATTGTA[G/A]TCTAATACAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGTGTTCTTCCTACACCACTCAGATCTAGATAGGTAACAACCACATTGTA</left_flank>
        <right_flank>TCTAATACACATTATATTTGTTTATTAAAAAAATAGTGGGTGATTGTCTC</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTATTAAAAATTTTAGATCAATTTTCGAATGAAAAAGTACCCGGGACCATGTCTATCAGATTTCACAAGCCGCGTATTTTGAATAAGTGGATAGTGCGCCTATAGCGCCAATCCGTCGCTCGACTTCGCAGTTTTTGCAAACGAATGTTCTTCTGTTGTGACGAGAAGATGCACACATTTCATTATTGCGCAAGCGCAGTTGTCGTCCATAGGTGAGAGAGCGGAGAGTGTGAGAGTTATGACAGAACGACGATCCTGTGGAAATTTTGATTTAAATATAGACATTTCCGGAAAGTGTTCAATTCATTCTTATCCAAAATGCTGAGGTCAACCGCGTCTTTGTGAAACCGGAGAGACACGCTGAAAAGAAAAGAAACCCCACTCCACTTGTTTACTATTAAAAAAAAGATGATTATCTCTTTTGACCTTCCGAAGAGCACTATTCTTGGTGTTCTTCCTACACCACTCAGATCTAGATAGGTAACAACCACATTGTAGTCTAATACACATTATATTTGTTTATTAAAAAAATAGTGGGTGATTGTCTCTTTTGACCTACCCGAGAGCGCTAATTTTCTTATTTTTCCTATGCTATTCTGACGTCTTAATTGGTCCCGTCTACAATGTAGTCTCATTCAGTACTCCTAGCATTCTTATTGATTTGTCTCTCTATTATGTTTTTTACCTCGTTTTTTTTTCGATCTTTTCCCGCTCTTTTTGGTATAGATTGTCGCGGTCCGAGTAAAAATTTATTGAAAAAAATTCATTACAAAAGTAAAAAAAAATTCATTACAAAAGTAAAAAAAAATTCTTTACAAAAGTTTCCACACATCAAAATCCATTGGATTGAAATCCGTGGAGTTAGCAGGCCTCAAAGCATTGCCGAGGTATATAGGAAAATTAGCGTCTAAGTCCAGAACAGTGGATTTCGATCCACAAGACGGTGCCCAGTCCTACTAATGATTCCAAAAACGTTCGGCAAAGTGCTGAGTTGTTTA</canonical>
            <polymorphic>ATGTATTAAAAATTTTAGATCAATTTTCGAATGAAAAAGTACCCGGGACCATGTCTATCAGATTTCACAAGCCGCGTATTTTGAATAAGTGGATAGTGCGCCTATAGCGCCAATCCGTCGCTCGACTTCGCAGTTTTTGCAAACGAATGTTCTTCTGTTGTGACGAGAAGATGCACACATTTCATTATTGCGCAAGCGCAGTTGTCGTCCATAGGTGAGAGAGCGGAGAGTGTGAGAGTTATGACAGAACGACGATCCTGTGGAAATTTTGATTTAAATATAGACATTTCCGGAAAGTGTTCAATTCATTCTTATCCAAAATGCTGAGGTCAACCGCGTCTTTGTGAAACCGGAGAGACACGCTGAAAAGAAAAGAAACCCCACTCCACTTGTTTACTATTAAAAAAAAGATGATTATCTCTTTTGACCTTCCGAAGAGCACTATTCTTGGTGTTCTTCCTACACCACTCAGATCTAGATAGGTAACAACCACATTGTARTCTAATACACATTATATTTGTTTATTAAAAAAATAGTGGGTGATTGTCTCTTTTGACCTACCCGAGAGCGCTAATTTTCTTATTTTTCCTATGCTATTCTGACGTCTTAATTGGTCCCGTCTACAATGTAGTCTCATTCAGTACTCCTAGCATTCTTATTGATTTGTCTCTCTATTATGTTTTTTACCTCGTTTTTTTTTCGATCTTTTCCCGCTCTTTTTGGTATAGATTGTCGCGGTCCGAGTAAAAATTTATTGAAAAAAATTCATTACAAAAGTAAAAAAAAATTCATTACAAAAGTAAAAAAAAATTCTTTACAAAAGTTTCCACACATCAAAATCCATTGGATTGAAATCCGTGGAGTTAGCAGGCCTCAAAGCATTGCCGAGGTATATAGGAAAATTAGCGTCTAAGTCCAGAACAGTGGATTTCGATCCACAAGACGGTGCCCAGTCCTACTAATGATTCCAAAAACGTTCGGCAAAGTGCTGAGTTGTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAATTCATTCTTATCCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGAGACAATCACCCACTATT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TTCAATTCATTCTTATCCAAAATGCTGAGGTCAACCGCGTCTTTGTGAAACCGGAGAGACACGCTGAAAAGAAAAGAAACCCCACTCCACTTGTTTACTATTAAAAAAAAGATGATTATCTCTTTTGACCTTCCGAAGAGCACTATTCTTGGTGTTCTTCCTACACCACTCAGATCTAGATAGGTAACAACCACATTGTAGTCTAATACACATTATATTTGTTTATTAAAAAAATAGTGGGTGATTGTCTCTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTCAATTCATTCTTATCCAAAATGCTGAGGTCAACCGCGTCTTTGTGAAACCGGAGAGACACGCTGAAAAGAAAAGAAACCCCACTCCACTTGTTTACTATTAAAAAAAAGATGATTATCTCTTTTGACCTTCCGAAGAGCACTATTCTTGGTGTTCTTCCTACACCACTCAGATCTAGATAGGTAACAACCACATTGTARTCTAATACACATTATATTTGTTTATTAAAAAAATAGTGGGTGATTGTCTCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6110</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>456847</contig_pos>
        <strand>+</strand>
        <context>AGTAAACAAG[A/T]CTTACGGGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCATAATTTATAGATTCTGAGGTCTAAAAGGACCACACAAGTAAACAAG</left_flank>
        <right_flank>CTTACGGGTTTCTTCGTAGTAGTTCAGAGCTGCCTAATCCTTATACTAAT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCGTTTTTTTCCCATTAAATGTCTGAAATATGAAAATGCTCTCAATTTTCAATACAGCAAAGCTAATTCTATGCCTTGAAACACCCTAAAAATGGAGAACGTCGTTTTTGAATATTGCTGTTTTGCACGGAAAAGGCAATTTTTGGTACTATAACTGATATAACTCGGTTGAAACTGGCGAACATATTCCAAAATTTTCAGACGTGCCTAGACAGGTTTTTTCCAACCTATCCTGCACAAATGCATAAAATCCGGGTTTACAAGATTTCGAGGTTGCTTTGACAATGAAAACAAGAGGGGCAACTATTTTCCTATTCATCCATGTACTTTAGGTTTTGAATGTCTTATGAAAAGCTGCTCCTAAAATACCGTGTAGTTTTTTTTTCAGTTCTTTGAAATATCTTCCAGAGCGTGACTGATTTCCATGAACCACATTATGACCTATTTATCATAATTTATAGATTCTGAGGTCTAAAAGGACCACACAAGTAAACAAGACTTACGGGTTTCTTCGTAGTAGTTCAGAGCTGCCTAATCCTTATACTAATCTCTCTTGAAATTTCCAAATTTCATTCCGTGTTCCAATTCTAGGTCTTCTCAAAATTCGTAAGGTTTCAATAGTATAGTTCTCAAAATTAATCCCGTTGAAAATTCAAAATATCAAGATGACAATGAATATTCAATGCTGGTAAGTGAGTCCCTCTTTTTTATTATTTCCTTGTTTTGTTTTATCCCAGTTAGTTTCTACTTAAAAAGAAGTGGTTTGTCCATTAGTCTAGACGATTGTTTGAAAGTCACTCATTTCTTAAAATGACTTCAAAAAAAAAGGGAAACTCAAAAATCATCACTTTTTTGCTTTATTTTGCTTTGGGAGGGGAGAAAAAGTAATTTCACGTTTGAATGCTTAAAAGCATTTCTCCCCCTTTTTTCGCCATGTTCTTTTCTTCAAAGAGATTAAATTCTTATTATTTCCCCTTCTAGACTCTTTTACGTCTTCA</canonical>
            <polymorphic>AATCGTTTTTTTCCCATTAAATGTCTGAAATATGAAAATGCTCTCAATTTTCAATACAGCAAAGCTAATTCTATGCCTTGAAACACCCTAAAAATGGAGAACGTCGTTTTTGAATATTGCTGTTTTGCACGGAAAAGGCAATTTTTGGTACTATAACTGATATAACTCGGTTGAAACTGGCGAACATATTCCAAAATTTTCAGACGTGCCTAGACAGGTTTTTTCCAACCTATCCTGCACAAATGCATAAAATCCGGGTTTACAAGATTTCGAGGTTGCTTTGACAATGAAAACAAGAGGGGCAACTATTTTCCTATTCATCCATGTACTTTAGGTTTTGAATGTCTTATGAAAAGCTGCTCCTAAAATACCGTGTAGTTTTTTTTTCAGTTCTTTGAAATATCTTCCAGAGCGTGACTGATTTCCATGAACCACATTATGACCTATTTATCATAATTTATAGATTCTGAGGTCTAAAAGGACCACACAAGTAAACAAGWCTTACGGGTTTCTTCGTAGTAGTTCAGAGCTGCCTAATCCTTATACTAATCTCTCTTGAAATTTCCAAATTTCATTCCGTGTTCCAATTCTAGGTCTTCTCAAAATTCGTAAGGTTTCAATAGTATAGTTCTCAAAATTAATCCCGTTGAAAATTCAAAATATCAAGATGACAATGAATATTCAATGCTGGTAAGTGAGTCCCTCTTTTTTATTATTTCCTTGTTTTGTTTTATCCCAGTTAGTTTCTACTTAAAAAGAAGTGGTTTGTCCATTAGTCTAGACGATTGTTTGAAAGTCACTCATTTCTTAAAATGACTTCAAAAAAAAAGGGAAACTCAAAAATCATCACTTTTTTGCTTTATTTTGCTTTGGGAGGGGAGAAAAAGTAATTTCACGTTTGAATGCTTAAAAGCATTTCTCCCCCTTTTTTCGCCATGTTCTTTTCTTCAAAGAGATTAAATTCTTATTATTTCCCCTTCTAGACTCTTTTACGTCTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATGTACTTTAGGTTTTGAATG</pcr_primer_p1>
		<pcr_primer_p2>AATTTGGAAATTTCAAGAGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCATGTACTTTAGGTTTTGAATGTCTTATGAAAAGCTGCTCCTAAAATACCGTGTAGTTTTTTTTTCAGTTCTTTGAAATATCTTCCAGAGCGTGACTGATTTCCATGAACCACATTATGACCTATTTATCATAATTTATAGATTCTGAGGTCTAAAAGGACCACACAAGTAAACAAGACTTACGGGTTTCTTCGTAGTAGTTCAGAGCTGCCTAATCCTTATACTAATCTCTCTTGAAATTTCCAAATT</canonical_amplicon>
		<polymorphic_amplicon>CCATGTACTTTAGGTTTTGAATGTCTTATGAAAAGCTGCTCCTAAAATACCGTGTAGTTTTTTTTTCAGTTCTTTGAAATATCTTCCAGAGCGTGACTGATTTCCATGAACCACATTATGACCTATTTATCATAATTTATAGATTCTGAGGTCTAAAAGGACCACACAAGTAAACAAGWCTTACGGGTTTCTTCGTAGTAGTTCAGAGCTGCCTAATCCTTATACTAATCTCTCTTGAAATTTCCAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6111</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>459373</contig_pos>
        <strand>+</strand>
        <context>AATCAATTTA[C/G]ACAATAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCATTTTGTTTCCGCTTTTACCCAATTTGAAACATTGAAAAATCAATTTA</left_flank>
        <right_flank>ACAATAAAAAATGTTCTTTTGATTATGTTTTTTTTTCAGATATCTCAAGC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTTTATGATTACAGTAAAAACTCTGATAGAACTCTCAAAAACAAATTAAACAATCAACTTTCAGCCCATGTATCTCATTTTCTGTAAAGTATATCAAAAAGTGGTTAATTAATAAAATGTTGCTGGTATAATCGCGCACATTTTGTCAGTTGACTATTTTTTGATATCTTTTACAAGAAATTAGATATATGTGCCCAAAGTTGACAATATGGGTGTCGTTCTTTTAGAATGTTTACGGTATTATTATTGGTTTAACTATTGCAGTGGTAATCATGTACATCAAGGCCATTTTGCTTGTTGTGGTTCTGTTTTTCGTTCAAAATTCCACATCCACTCGGTAAGTGTAATTTTTAGCTAATTCAGCTTTTCGTAATTTATTACTTCATGCATCATTTGATTCAAATTTCAAACACCACTAGAGGTATTAGATTTCCGGGTTTCTCAAGATCATTTTGTTTCCGCTTTTACCCAATTTGAAACATTGAAAAATCAATTTAGACAATAAAAAATGTTCTTTTGATTATGTTTTTTTTTCAGATATCTCAAGCGAGCAGACTTCGACGATCCAAGGTAAGATAAAATACACCACAACCATTTTTGTTTCAAAGTACATACTTTTTTCTCAGAATGTTCACATCGTCGTTTGGCAAGAGATCGAGCGGCGCACTTGACGAATCGGAACCAGAAGTGATCCCAAACAGCTACCGTGCCATTAGAATTCAGAGACGAAGCTTTGACGAGCTGGATGACCCAAGGTAAACATCACTTTTTAACCTTTTCCATTCTAAAGTTTCATGTTTCTAGATTGATGTCGATGTCCTTTGGAAAACGAATGATGCTCCCCTCCCTTGCCGATTTGCATAGGTACACCATTTACGACAAACGCGGATCTGATATTGATGATCCTCGGTAATCAATTCTTTTTGGAAGTTTTGAAAAATTTAAGATCTTTTCCAGATTTTTCTCCGGCGCTTTTGGAAAGAAGAAGTAACCGACAC</canonical>
            <polymorphic>TACTTTATGATTACAGTAAAAACTCTGATAGAACTCTCAAAAACAAATTAAACAATCAACTTTCAGCCCATGTATCTCATTTTCTGTAAAGTATATCAAAAAGTGGTTAATTAATAAAATGTTGCTGGTATAATCGCGCACATTTTGTCAGTTGACTATTTTTTGATATCTTTTACAAGAAATTAGATATATGTGCCCAAAGTTGACAATATGGGTGTCGTTCTTTTAGAATGTTTACGGTATTATTATTGGTTTAACTATTGCAGTGGTAATCATGTACATCAAGGCCATTTTGCTTGTTGTGGTTCTGTTTTTCGTTCAAAATTCCACATCCACTCGGTAAGTGTAATTTTTAGCTAATTCAGCTTTTCGTAATTTATTACTTCATGCATCATTTGATTCAAATTTCAAACACCACTAGAGGTATTAGATTTCCGGGTTTCTCAAGATCATTTTGTTTCCGCTTTTACCCAATTTGAAACATTGAAAAATCAATTTASACAATAAAAAATGTTCTTTTGATTATGTTTTTTTTTCAGATATCTCAAGCGAGCAGACTTCGACGATCCAAGGTAAGATAAAATACACCACAACCATTTTTGTTTCAAAGTACATACTTTTTTCTCAGAATGTTCACATCGTCGTTTGGCAAGAGATCGAGCGGCGCACTTGACGAATCGGAACCAGAAGTGATCCCAAACAGCTACCGTGCCATTAGAATTCAGAGACGAAGCTTTGACGAGCTGGATGACCCAAGGTAAACATCACTTTTTAACCTTTTCCATTCTAAAGTTTCATGTTTCTAGATTGATGTCGATGTCCTTTGGAAAACGAATGATGCTCCCCTCCCTTGCCGATTTGCATAGGTACACCATTTACGACAAACGCGGATCTGATATTGATGATCCTCGGTAATCAATTCTTTTTGGAAGTTTTGAAAAATTTAAGATCTTTTCCAGATTTTTCTCCGGCGCTTTTGGAAAGAAGAAGTAACCGACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAGCTAATTCAGCTTTTCGTA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATGGTTGTGGTGTATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTAGCTAATTCAGCTTTTCGTAATTTATTACTTCATGCATCATTTGATTCAAATTTCAAACACCACTAGAGGTATTAGATTTCCGGGTTTCTCAAGATCATTTTGTTTCCGCTTTTACCCAATTTGAAACATTGAAAAATCAATTTAGACAATAAAAAATGTTCTTTTGATTATGTTTTTTTTTCAGATATCTCAAGCGAGCAGACTTCGACGATCCAAGGTAAGATAAAATACACCACAACCATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTAGCTAATTCAGCTTTTCGTAATTTATTACTTCATGCATCATTTGATTCAAATTTCAAACACCACTAGAGGTATTAGATTTCCGGGTTTCTCAAGATCATTTTGTTTCCGCTTTTACCCAATTTGAAACATTGAAAAATCAATTTASACAATAAAAAATGTTCTTTTGATTATGTTTTTTTTTCAGATATCTCAAGCGAGCAGACTTCGACGATCCAAGGTAAGATAAAATACACCACAACCATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6112</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>459317</contig_pos>
        <strand>+</strand>
        <context>TCCGGGTTTC[C/T]CAAGATCATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTGATTCAAATTTCAAACACCACTAGAGGTATTAGATTTCCGGGTTTC</left_flank>
        <right_flank>CAAGATCATTTTGTTTCCGCTTTTACCCAATTTGAAACATTGAAAAATCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTATTTGAAACTTTTAAAACAACTTTTTCTCTTTTTATGGTGATCTTTATTTCTGTACTTTATGATTACAGTAAAAACTCTGATAGAACTCTCAAAAACAAATTAAACAATCAACTTTCAGCCCATGTATCTCATTTTCTGTAAAGTATATCAAAAAGTGGTTAATTAATAAAATGTTGCTGGTATAATCGCGCACATTTTGTCAGTTGACTATTTTTTGATATCTTTTACAAGAAATTAGATATATGTGCCCAAAGTTGACAATATGGGTGTCGTTCTTTTAGAATGTTTACGGTATTATTATTGGTTTAACTATTGCAGTGGTAATCATGTACATCAAGGCCATTTTGCTTGTTGTGGTTCTGTTTTTCGTTCAAAATTCCACATCCACTCGGTAAGTGTAATTTTTAGCTAATTCAGCTTTTCGTAATTTATTACTTCATGCATCATTTGATTCAAATTTCAAACACCACTAGAGGTATTAGATTTCCGGGTTTCTCAAGATCATTTTGTTTCCGCTTTTACCCAATTTGAAACATTGAAAAATCAATTTAGACAATAAAAAATGTTCTTTTGATTATGTTTTTTTTTCAGATATCTCAAGCGAGCAGACTTCGACGATCCAAGGTAAGATAAAATACACCACAACCATTTTTGTTTCAAAGTACATACTTTTTTCTCAGAATGTTCACATCGTCGTTTGGCAAGAGATCGAGCGGCGCACTTGACGAATCGGAACCAGAAGTGATCCCAAACAGCTACCGTGCCATTAGAATTCAGAGACGAAGCTTTGACGAGCTGGATGACCCAAGGTAAACATCACTTTTTAACCTTTTCCATTCTAAAGTTTCATGTTTCTAGATTGATGTCGATGTCCTTTGGAAAACGAATGATGCTCCCCTCCCTTGCCGATTTGCATAGGTACACCATTTACGACAAACGCGGATCTGATATTGATGATCCTCGGTAATCAATTCTTTTTGGAAGTTTTGAAAAATT</canonical>
            <polymorphic>ATTATTTGAAACTTTTAAAACAACTTTTTCTCTTTTTATGGTGATCTTTATTTCTGTACTTTATGATTACAGTAAAAACTCTGATAGAACTCTCAAAAACAAATTAAACAATCAACTTTCAGCCCATGTATCTCATTTTCTGTAAAGTATATCAAAAAGTGGTTAATTAATAAAATGTTGCTGGTATAATCGCGCACATTTTGTCAGTTGACTATTTTTTGATATCTTTTACAAGAAATTAGATATATGTGCCCAAAGTTGACAATATGGGTGTCGTTCTTTTAGAATGTTTACGGTATTATTATTGGTTTAACTATTGCAGTGGTAATCATGTACATCAAGGCCATTTTGCTTGTTGTGGTTCTGTTTTTCGTTCAAAATTCCACATCCACTCGGTAAGTGTAATTTTTAGCTAATTCAGCTTTTCGTAATTTATTACTTCATGCATCATTTGATTCAAATTTCAAACACCACTAGAGGTATTAGATTTCCGGGTTTCYCAAGATCATTTTGTTTCCGCTTTTACCCAATTTGAAACATTGAAAAATCAATTTAGACAATAAAAAATGTTCTTTTGATTATGTTTTTTTTTCAGATATCTCAAGCGAGCAGACTTCGACGATCCAAGGTAAGATAAAATACACCACAACCATTTTTGTTTCAAAGTACATACTTTTTTCTCAGAATGTTCACATCGTCGTTTGGCAAGAGATCGAGCGGCGCACTTGACGAATCGGAACCAGAAGTGATCCCAAACAGCTACCGTGCCATTAGAATTCAGAGACGAAGCTTTGACGAGCTGGATGACCCAAGGTAAACATCACTTTTTAACCTTTTCCATTCTAAAGTTTCATGTTTCTAGATTGATGTCGATGTCCTTTGGAAAACGAATGATGCTCCCCTCCCTTGCCGATTTGCATAGGTACACCATTTACGACAAACGCGGATCTGATATTGATGATCCTCGGTAATCAATTCTTTTTGGAAGTTTTGAAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>501 358 141</canonical_bands>
                <polymorphic_bands>859 141</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>499 400 101</canonical_bands>
                <polymorphic_bands>600 400</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAGCTAATTCAGCTTTTCGTA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATGGTTGTGGTGTATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTAGCTAATTCAGCTTTTCGTAATTTATTACTTCATGCATCATTTGATTCAAATTTCAAACACCACTAGAGGTATTAGATTTCCGGGTTTCTCAAGATCATTTTGTTTCCGCTTTTACCCAATTTGAAACATTGAAAAATCAATTTAGACAATAAAAAATGTTCTTTTGATTATGTTTTTTTTTCAGATATCTCAAGCGAGCAGACTTCGACGATCCAAGGTAAGATAAAATACACCACAACCATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTAGCTAATTCAGCTTTTCGTAATTTATTACTTCATGCATCATTTGATTCAAATTTCAAACACCACTAGAGGTATTAGATTTCCGGGTTTCYCAAGATCATTTTGTTTCCGCTTTTACCCAATTTGAAACATTGAAAAATCAATTTAGACAATAAAAAATGTTCTTTTGATTATGTTTTTTTTTCAGATATCTCAAGCGAGCAGACTTCGACGATCCAAGGTAAGATAAAATACACCACAACCATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6113</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>459099</contig_pos>
        <strand></strand>
        <context>tgtcgttctt[T/C]tagaatgttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAAGAAATTAGATATATGTGCCCAAAGTTGACAATATGGGTGTCGTTCTT</left_flank>
        <right_flank>TAGAATGTTTACGGTATTATTATTGGTTTAACTATTGCAGTGGTAATCAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACCATTAAGCTCCGCCCCATTTTTCTTGTTAGTAGTCTTCATTTCATTTCAATCAGTGTGCTCTCAGTGCGCGAGGCCTATCAATCACTTGCTCTCCTTTTTCTGACTTAACCTTCCAACAATTTTTCACTTTCCCACCTGTCACTTCTTTTTTCTTCATAGGTCCTCCCCCGCCTCTACCTACTTCTTCTTTCTATTTTTGTTAACTTTTTTTTCAATTATTTGAAACTTTTAAAACAACTTTTTCTCTTTTTATGGTGATCTTTATTTCTGTACTTTATGATTACAGTAAAAACTCTGATAGAACTCTCAAAAACAAATTAAACAATCAACTTTCAGCCCATGTATCTCATTTTCTGTAAAGTATATCAAAAAGTGGTTAATTAATAAAATGTTGCTGGTATAATCGCGCACATTTTGTCAGTTGACTATTTTTTGATATCTTTTACAAGAAATTAGATATATGTGCCCAAAGTTGACAATATGGGTGTCGTTCTTTTAGAATGTTTACGGTATTATTATTGGTTTAACTATTGCAGTGGTAATCATGTACATCAAGGCCATTTTGCTTGTTGTGGTTCTGTTTTTCGTTCAAAATTCCACATCCACTCGGTAAGTGTAATTTTTAGCTAATTCAGCTTTTCGTAATTTATTACTTCATGCATCATTTGATTCAAATTTCAAACACCACTAGAGGTATTAGATTTCCGGGTTTCTCAAGATCATTTTGTTTCCGCTTTTACCCAATTTGAAACATTGAAAAATCAATTTAGACAATAAAAAATGTTCTTTTGATTATGTTTTTTTTTCAGATATCTCAAGCGAGCAGACTTCGACGATCCAAGGTAAGATAAAATACACCACAACCATTTTTGTTTCAAAGTACATACTTTTTTCTCAGAATGTTCACATCGTCGTTTGGCAAGAGATCGAGCGGCGCACTTGACGAATCGGAACCAGAAGTGATCCCAAACAGCTACCGTGCCATTAGAATTCAGA</canonical>
            <polymorphic>CACCATTAAGCTCCGCCCCATTTTTCTTGTTAGTAGTCTTCATTTCATTTCAATCAGTGTGCTCTCAGTGCGCGAGGCCTATCAATCACTTGCTCTCCTTTTTCTGACTTAACCTTCCAACAATTTTTCACTTTCCCACCTGTCACTTCTTTTTTCTTCATAGGTCCTCCCCCGCCTCTACCTACTTCTTCTTTCTATTTTTGTTAACTTTTTTTTCAATTATTTGAAACTTTTAAAACAACTTTTTCTCTTTTTATGGTGATCTTTATTTCTGTACTTTATGATTACAGTAAAAACTCTGATAGAACTCTCAAAAACAAATTAAACAATCAACTTTCAGCCCATGTATCTCATTTTCTGTAAAGTATATCAAAAAGTGGTTAATTAATAAAATGTTGCTGGTATAATCGCGCACATTTTGTCAGTTGACTATTTTTTGATATCTTTTACAAGAAATTAGATATATGTGCCCAAAGTTGACAATATGGGTGTCGTTCTTYTAGAATGTTTACGGTATTATTATTGGTTTAACTATTGCAGTGGTAATCATGTACATCAAGGCCATTTTGCTTGTTGTGGTTCTGTTTTTCGTTCAAAATTCCACATCCACTCGGTAAGTGTAATTTTTAGCTAATTCAGCTTTTCGTAATTTATTACTTCATGCATCATTTGATTCAAATTTCAAACACCACTAGAGGTATTAGATTTCCGGGTTTCTCAAGATCATTTTGTTTCCGCTTTTACCCAATTTGAAACATTGAAAAATCAATTTAGACAATAAAAAATGTTCTTTTGATTATGTTTTTTTTTCAGATATCTCAAGCGAGCAGACTTCGACGATCCAAGGTAAGATAAAATACACCACAACCATTTTTGTTTCAAAGTACATACTTTTTTCTCAGAATGTTCACATCGTCGTTTGGCAAGAGATCGAGCGGCGCACTTGACGAATCGGAACCAGAAGTGATCCCAAACAGCTACCGTGCCATTAGAATTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTCTCAAAAACAAATTAAACAA</pcr_primer_p1>
		<pcr_primer_p2>TGTACATGATTACCACTGCAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACTCTCAAAAACAAATTAAACAATCAACTTTCAGCCCATGTATCTCATTTTCTGTAAAGTATATCAAAAAGTGGTTAATTAATAAAATGTTGCTGGTATAATCGCGCACATTTTGTCAGTTGACTATTTTTTGATATCTTTTACAAGAAATTAGATATATGTGCCCAAAGTTGACAATATGGGTGTCGTTCTTTTAGAATGTTTACGGTATTATTATTGGTTTAACTATTGCAGTGGTAATCATGTACA</canonical_amplicon>
		<polymorphic_amplicon>AACTCTCAAAAACAAATTAAACAATCAACTTTCAGCCCATGTATCTCATTTTCTGTAAAGTATATCAAAAAGTGGTTAATTAATAAAATGTTGCTGGTATAATCGCGCACATTTTGTCAGTTGACTATTTTTTGATATCTTTTACAAGAAATTAGATATATGTGCCCAAAGTTGACAATATGGGTGTCGTTCTTYTAGAATGTTTACGGTATTATTATTGGTTTAACTATTGCAGTGGTAATCATGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6114</snp_id>
        <super_contig>c003201051.Contig1</super_contig>
        <contig_pos>41622</contig_pos>
        <strand>+</strand>
        <context>AAAGGTGTCA[A/G]CTAGAAAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGCTCCAGCTGCAGCAACATTCAGAAAAGAGCTACAAAAAAGGTGTCA</left_flank>
        <right_flank>CTAGAAAATTGTAGAACACATCTAAAACTATAAACATGCAAAATTTGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGTGAGATGTCTTCTGAATTACTCATTTACTATGAGAAAAATTATCATTTTTGTACTATAAAAAGTTTCGTAACTTCCTGCCAAGGTTACGGTAACTTCTATATGGCAGCCCAGGAAATGGACTTTCCAATTAGGATTGAAAATAAACATAATTTATTGTCTGAATTTCAGTGGTTGGTTCTGTTTTGGAGTTAAGATGTTACTGTAGTTCAGAAACTTCAAACCACTACCCGAAAAAAAGGCATCACCCTGCCCGGCACGCATCCGCCACTTAATTGCATATAACTTTGCTCATAGACAAGATACAATTTTCCAAATAGTATCATTTTGTATTAATCGTCAAGTTTTATCATATCCAATTTACTTGGTCCAAAATATTAATTCTGGAAGAAATTATGGCACGGCCCTCAAAACGAGGACCAAGGCCTGGCTAACAAGTGTGATGTTTTTCGCTCCAGCTGCAGCAACATTCAGAAAAGAGCTACAAAAAAGGTGTCAGCTAGAAAATTGTAGAACACATCTAAAACTATAAACATGCAAAATTTGAATAAAAAGAGCTCATTAAAAAGTAAAGAAATCAATCACCCAATAGATGACCAAGTTTTGTCGGGTTACCGTAAGCTATTAACTTTGAGCTAATTTATCTCAATTCCTATGTAAGATATCAAAAAGGTGTCAACTAATAAAGTTTTTATCATAATATCAGAAATCTTTTGTCAGCTGACCACTTTTTGATATCACTTAAAGGAGCCGAGATATATGAGCTCAAAGTTAAGAGGGGAACATCCGACCGCGTAGCTCTGCCGGAAGGCGCCGATTTTTTAATTTTGAGCCAATTCATCTCGGTTTCTGTGAAAAATTAAAAAAAGATGTCAACTCAGAAGAGATTTTTAATATTACGAATAACATTTTATCAGCTCACCACTTTTTGATATCTTTCACCGGAATCCGGATAAATTGACTCAAAGATAAGGGGTCGGGAGCCGACAGCGTAGCTCA</canonical>
            <polymorphic>TCGTGAGATGTCTTCTGAATTACTCATTTACTATGAGAAAAATTATCATTTTTGTACTATAAAAAGTTTCGTAACTTCCTGCCAAGGTTACGGTAACTTCTATATGGCAGCCCAGGAAATGGACTTTCCAATTAGGATTGAAAATAAACATAATTTATTGTCTGAATTTCAGTGGTTGGTTCTGTTTTGGAGTTAAGATGTTACTGTAGTTCAGAAACTTCAAACCACTACCCGAAAAAAAGGCATCACCCTGCCCGGCACGCATCCGCCACTTAATTGCATATAACTTTGCTCATAGACAAGATACAATTTTCCAAATAGTATCATTTTGTATTAATCGTCAAGTTTTATCATATCCAATTTACTTGGTCCAAAATATTAATTCTGGAAGAAATTATGGCACGGCCCTCAAAACGAGGACCAAGGCCTGGCTAACAAGTGTGATGTTTTTCGCTCCAGCTGCAGCAACATTCAGAAAAGAGCTACAAAAAAGGTGTCARCTAGAAAATTGTAGAACACATCTAAAACTATAAACATGCAAAATTTGAATAAAAAGAGCTCATTAAAAAGTAAAGAAATCAATCACCCAATAGATGACCAAGTTTTGTCGGGTTACCGTAAGCTATTAACTTTGAGCTAATTTATCTCAATTCCTATGTAAGATATCAAAAAGGTGTCAACTAATAAAGTTTTTATCATAATATCAGAAATCTTTTGTCAGCTGACCACTTTTTGATATCACTTAAAGGAGCCGAGATATATGAGCTCAAAGTTAAGAGGGGAACATCCGACCGCGTAGCTCTGCCGGAAGGCGCCGATTTTTTAATTTTGAGCCAATTCATCTCGGTTTCTGTGAAAAATTAAAAAAAGATGTCAACTCAGAAGAGATTTTTAATATTACGAATAACATTTTATCAGCTCACCACTTTTTGATATCTTTCACCGGAATCCGGATAAATTGACTCAAAGATAAGGGGTCGGGAGCCGACAGCGTAGCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>459 119 85 78 64 58 44 34 23 18 14 4</canonical_bands>
                <polymorphic_bands>459 119 85 78 76 64 44 34 23 14 4</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>295 110 85 85 66 64 58 34 34 30 28 23 21 18 14 14 12 5 4</canonical_bands>
                <polymorphic_bands>295 110 85 85 76 66 64 34 34 30 28 23 21 14 14 12 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGGCTAACAAGTGTGATGTT</pcr_primer_p1>
		<pcr_primer_p2>CGACAAAACTTGGTCATCTATT</pcr_primer_p2>
		<pcr_amplicon_size>183</pcr_amplicon_size>
		<canonical_amplicon>CTGGCTAACAAGTGTGATGTTTTTCGCTCCAGCTGCAGCAACATTCAGAAAAGAGCTACAAAAAAGGTGTCAGCTAGAAAATTGTAGAACACATCTAAAACTATAAACATGCAAAATTTGAATAAAAAGAGCTCATTAAAAAGTAAAGAAATCAATCACCCAATAGATGACCAAGTTTTGTCG</canonical_amplicon>
		<polymorphic_amplicon>CTGGCTAACAAGTGTGATGTTTTTCGCTCCAGCTGCAGCAACATTCAGAAAAGAGCTACAAAAAAGGTGTCARCTAGAAAATTGTAGAACACATCTAAAACTATAAACATGCAAAATTTGAATAAAAAGAGCTCATTAAAAAGTAAAGAAATCAATCACCCAATAGATGACCAAGTTTTGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6115</snp_id>
        <super_contig>c003201051.Contig1</super_contig>
        <contig_pos>42507</contig_pos>
        <strand>+</strand>
        <context>AACCCCGAAG[A/C]TCCACCCACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATCCACAGATGAGTAACGCTTTCGTTATTTTTGCTGGGAAACCCCGAAG</left_flank>
        <right_flank>TCCACCCACTTGAATTTATACATAAGTTACTCGATTTGAACTCTATTACA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATTTTTAATATTACGAATAACATTTTATCAGCTCACCACTTTTTGATATCTTTCACCGGAATCCGGATAAATTGACTCAAAGATAAGGGGTCGGGAGCCGACAGCGTAGCTCAGCCGGCAGGCGCCTACTTTTTAACTTTGAGCCATTTTATCTCAACTTCTGTAAACGATATCAAAAAGTGATTGAGTAACAAAATATTTCAGATGTTATAACCAACATTTTATCAGCTCACCACTTTTTGATATCTTTTACAGGAAATGAGATATATGGGCTTAAAGTTGAAAGTGGGACTCTTACCTTTGAGCACATATATCGTTCCATTAGAGTGGTTACGGTATTTACGGAGTTTGCAGGGTTTTGGCTGTTATCAAATTTTAACATGTCATATCCACTGACAGTAGTCACTTTTCTTCGGCTGAAGATCAAATTAGTCATCATTTTTTGCGCATCCACAGATGAGTAACGCTTTCGTTATTTTTGCTGGGAAACCCCGAAGATCCACCCACTTGAATTTATACATAAGTTACTCGATTTGAACTCTATTACAAAAAAAAGAATCGCGAAAAAAGCGTACGGTACCGTCTTGCCAATCGTCGTCTTCTTTCTCTTTTCATCATTTTGATTTATACAGTTTCAGCCAACCTGATCATTGCAGATGTCGAACAACCTGAATGACATTATGGAGGTTTTGGAGCACAACGCAGGGAGATTGGTAAGAAAAAGGCACATCAAAACAATTGTTTTAATTCAAAAACTTGAAATTTCCAGACCGAAAACGATAGAAATATTCCGGAAGAGGATGAAGCTGTGATTCGATCTTCGGCATGGTCCCAGTATCCTCCAGTAATCCAGACAGAAGATTCAGCGATGAGACTTCAGATGCAGAATAATCAAGTCCACATTGATTATCCACTAATTTCGGAAAAGCTGAACACAAGTGAGTTTTCTGGTGTCTCCGCCCTCTTCTAGATTCACTTAGACTGAGGAATCACTAAGG</canonical>
            <polymorphic>AGATTTTTAATATTACGAATAACATTTTATCAGCTCACCACTTTTTGATATCTTTCACCGGAATCCGGATAAATTGACTCAAAGATAAGGGGTCGGGAGCCGACAGCGTAGCTCAGCCGGCAGGCGCCTACTTTTTAACTTTGAGCCATTTTATCTCAACTTCTGTAAACGATATCAAAAAGTGATTGAGTAACAAAATATTTCAGATGTTATAACCAACATTTTATCAGCTCACCACTTTTTGATATCTTTTACAGGAAATGAGATATATGGGCTTAAAGTTGAAAGTGGGACTCTTACCTTTGAGCACATATATCGTTCCATTAGAGTGGTTACGGTATTTACGGAGTTTGCAGGGTTTTGGCTGTTATCAAATTTTAACATGTCATATCCACTGACAGTAGTCACTTTTCTTCGGCTGAAGATCAAATTAGTCATCATTTTTTGCGCATCCACAGATGAGTAACGCTTTCGTTATTTTTGCTGGGAAACCCCGAAGMTCCACCCACTTGAATTTATACATAAGTTACTCGATTTGAACTCTATTACAAAAAAAAGAATCGCGAAAAAAGCGTACGGTACCGTCTTGCCAATCGTCGTCTTCTTTCTCTTTTCATCATTTTGATTTATACAGTTTCAGCCAACCTGATCATTGCAGATGTCGAACAACCTGAATGACATTATGGAGGTTTTGGAGCACAACGCAGGGAGATTGGTAAGAAAAAGGCACATCAAAACAATTGTTTTAATTCAAAAACTTGAAATTTCCAGACCGAAAACGATAGAAATATTCCGGAAGAGGATGAAGCTGTGATTCGATCTTCGGCATGGTCCCAGTATCCTCCAGTAATCCAGACAGAAGATTCAGCGATGAGACTTCAGATGCAGAATAATCAAGTCCACATTGATTATCCACTAATTTCGGAAAAGCTGAACACAAGTGAGTTTTCTGGTGTCTCCGCCCTCTTCTAGATTCACTTAGACTGAGGAATCACTAAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>423 183 170 149 75</canonical_bands>
                <polymorphic_bands>423 224 183 170</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACTGACAGTAGTCACTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>GGCTGAAACTGTATAAATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCACTGACAGTAGTCACTTTTCTTCGGCTGAAGATCAAATTAGTCATCATTTTTTGCGCATCCACAGATGAGTAACGCTTTCGTTATTTTTGCTGGGAAACCCCGAAGATCCACCCACTTGAATTTATACATAAGTTACTCGATTTGAACTCTATTACAAAAAAAAGAATCGCGAAAAAAGCGTACGGTACCGTCTTGCCAATCGTCGTCTTCTTTCTCTTTTCATCATTTTGATTTATACAGTTTCAGCC</canonical_amplicon>
		<polymorphic_amplicon>CCACTGACAGTAGTCACTTTTCTTCGGCTGAAGATCAAATTAGTCATCATTTTTTGCGCATCCACAGATGAGTAACGCTTTCGTTATTTTTGCTGGGAAACCCCGAAGMTCCACCCACTTGAATTTATACATAAGTTACTCGATTTGAACTCTATTACAAAAAAAAGAATCGCGAAAAAAGCGTACGGTACCGTCTTGCCAATCGTCGTCTTCTTTCTCTTTTCATCATTTTGATTTATACAGTTTCAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6116</snp_id>
        <super_contig>c003201051.Contig1</super_contig>
        <contig_pos>43703</contig_pos>
        <strand></strand>
        <context>TAGGCCTTAA[A/G]CTTTATAGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGATAATTTTTTTGAAAAAAAAAGATGTTGATATTTCTGATAGGCCTTAA</left_flank>
        <right_flank>CTTTATAGAGCTGGTATATCTCTAAATAAGATACCGTAACATCCTGTATT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAATAACAAATTATAATGGTTTTGGATATATTTTCTATTGTTTTCAGAGATTTCAAAAGCCTTTCTGATATAAACAAAAACAGTCCCATTGTATTTAAATTTTCAAATCATTTCAGTCTCCCTCGGAATAAACCAGATGTCTATCAATCAGCACCCAGTGACCCTACTGGAGGATTCAGATGGTGAGTACAACTTTAAAAAAATATTCCTCCGCAAAAAAAACCAGTCTCAATTTTGCAAAATAAGTGTTATGTTGTCTGCGTCTTGCTGATAGCTGCTGACTCATAAGAAGTCTTGGAAGTTGAGTAAAAATGAGTGACTAATGATGAACATCGGAAACAATTATTGTTCTGATTATCATTATCTTTAGTGATAAGAGGTTTCCGGTTGATATCTAGATAAAGTTAAAATAAGAGAGCTCAGAGCAACAGAAATTAAGATCAAATTAAGATAATTTTTTTGAAAAAAAAAGATGTTGATATTTCTGATAGGCCTTAAACTTTATAGAGCTGGTATATCTCTAAATAAGATACCGTAACATCCTGTATTTTGCTCCAAATCGAAACTTTTGAACAATTTCGAATTTGTTGCGTTAAGAGCTTCAAAACTAGTGTGAACATGGCTATGCCTTTAAATTCGAAGCTTTGAGTTTAAAGTCTCAAAAGGGGTCTTGAATTGAAATTATCTGAAGTAGATCATGATTATACTCATTTTGAAGCCCTTAGCATTAGAAATGTAAATCTAGCAAATAAATTGAAGTTAAACGAAAAATAAGAGCGCTACGAAGTTTCTAGTCACACAAGTGGACGGTTTTCAAAATCTGAAATTACTGTAACTTGAGCTAATTTTGTCCAGTCATGAAAATTTTGGTATAGTAGAGTTTAGCATAAAAAGAGCTTTAAAACGAGTATAATCATGACTAGAATTCTCGAATTTCGATTTTTCAAATTTTTTGGTCTATGCGCCTTGAAGCTCAAAAATCAGAAATCAAAATTTAAA</canonical>
            <polymorphic>GCAATAACAAATTATAATGGTTTTGGATATATTTTCTATTGTTTTCAGAGATTTCAAAAGCCTTTCTGATATAAACAAAAACAGTCCCATTGTATTTAAATTTTCAAATCATTTCAGTCTCCCTCGGAATAAACCAGATGTCTATCAATCAGCACCCAGTGACCCTACTGGAGGATTCAGATGGTGAGTACAACTTTAAAAAAATATTCCTCCGCAAAAAAAACCAGTCTCAATTTTGCAAAATAAGTGTTATGTTGTCTGCGTCTTGCTGATAGCTGCTGACTCATAAGAAGTCTTGGAAGTTGAGTAAAAATGAGTGACTAATGATGAACATCGGAAACAATTATTGTTCTGATTATCATTATCTTTAGTGATAAGAGGTTTCCGGTTGATATCTAGATAAAGTTAAAATAAGAGAGCTCAGAGCAACAGAAATTAAGATCAAATTAAGATAATTTTTTTGAAAAAAAAAGATGTTGATATTTCTGATAGGCCTTAARCTTTATAGAGCTGGTATATCTCTAAATAAGATACCGTAACATCCTGTATTTTGCTCCAAATCGAAACTTTTGAACAATTTCGAATTTGTTGCGTTAAGAGCTTCAAAACTAGTGTGAACATGGCTATGCCTTTAAATTCGAAGCTTTGAGTTTAAAGTCTCAAAAGGGGTCTTGAATTGAAATTATCTGAAGTAGATCATGATTATACTCATTTTGAAGCCCTTAGCATTAGAAATGTAAATCTAGCAAATAAATTGAAGTTAAACGAAAAATAAGAGCGCTACGAAGTTTCTAGTCACACAAGTGGACGGTTTTCAAAATCTGAAATTACTGTAACTTGAGCTAATTTTGTCCAGTCATGAAAATTTTGGTATAGTAGAGTTTAGCATAAAAAGAGCTTTAAAACGAGTATAATCATGACTAGAATTCTCGAATTTCGATTTTTCAAATTTTTTGGTCTATGCGCCTTGAAGCTCAAAAATCAGAAATCAAAATTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCAACAGAAATTAAGATCAAA</pcr_primer_p1>
		<pcr_primer_p2>TCCACTTGTGTGACTAGAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>385</pcr_amplicon_size>
		<canonical_amplicon>GAGCAACAGAAATTAAGATCAAATTAAGATAATTTTTTTGAAAAAAAAAGATGTTGATATTTCTGATAGGCCTTAAACTTTATAGAGCTGGTATATCTCTAAATAAGATACCGTAACATCCTGTATTTTGCTCCAAATCGAAACTTTTGAACAATTTCGAATTTGTTGCGTTAAGAGCTTCAAAACTAGTGTGAACATGGCTATGCCTTTAAATTCGAAGCTTTGAGTTTAAAGTCTCAAAAGGGGTCTTGAATTGAAATTATCTGAAGTAGATCATGATTATACTCATTTTGAAGCCCTTAGCATTAGAAATGTAAATCTAGCAAATAAATTGAAGTTAAACGAAAAATAAGAGCGCTACGAAGTTTCTAGTCACACAAGTGGA</canonical_amplicon>
		<polymorphic_amplicon>GAGCAACAGAAATTAAGATCAAATTAAGATAATTTTTTTGAAAAAAAAAGATGTTGATATTTCTGATAGGCCTTAARCTTTATAGAGCTGGTATATCTCTAAATAAGATACCGTAACATCCTGTATTTTGCTCCAAATCGAAACTTTTGAACAATTTCGAATTTGTTGCGTTAAGAGCTTCAAAACTAGTGTGAACATGGCTATGCCTTTAAATTCGAAGCTTTGAGTTTAAAGTCTCAAAAGGGGTCTTGAATTGAAATTATCTGAAGTAGATCATGATTATACTCATTTTGAAGCCCTTAGCATTAGAAATGTAAATCTAGCAAATAAATTGAAGTTAAACGAAAAATAAGAGCGCTACGAAGTTTCTAGTCACACAAGTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6118</snp_id>
        <super_contig>c003201051.Contig1</super_contig>
        <contig_pos>53373</contig_pos>
        <strand>+</strand>
        <context>AGTCCTTGAG[A/C]TGTTTGAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCAAACTCCGTGCATTGCTGGATAACAGACGCCGAGAGCAAGTCCTTGAG</left_flank>
        <right_flank>TGTTTGAATACACATGACAAAGATATCAGTGAATGGATGGAATTTCAGAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCATATATGTTAGCTGGTTTCCGAGAAGCAAGAAGAAACTCCATGATCGACAGAACGAGCAAATGATGATAGCCCAGACAGCAGTAGAAGTCATCATGTCCCGCCATGGCAATGTGGTTAGCTGGAAAACAAATTTTCGCTAGAACCCAATGATTTTTCTCAACTTACAGTCATATTCTTAACAGCTACTGTTCCAACTTTATCAGTGATAAACTTTTTCTCATCCTCTGCAATGTATCTATGAGTCGCCGGACTATCACCTGCCACATACATCCATGCAAACGCCCATATGATTCCTAGAACTCCGAAAACGTGGAATGGAGCACTCCAGTGGAAATGAGAGACGAGATAAGCCGATGCTGGTAGTCCAACCATGACTCCAATCGATGCTCCTGTGAATGTAGTCGTCGCCAGTTTAGATCTCTCCAGAGGTGGCGCCCAGAATTTCCAAACTCCGTGCATTGCTGGATAACAGACGCCGAGAGCAAGTCCTTGAGATGTTTGAATACACATGACAAAGATATCAGTGAATGGATGGAATTTCAGAGAAACTGCAGTCAAAACGTTGAGAATAGCGGCTACGAGAATTCCTAGCATGAAGAGTTTGTTGGGAGAAAATTTGGCAGCAAGGACTCCGGCGGGGATTTGAGAGGCAGCGTATCCATAGAAGAAAGAGGACTCCATCATTCCAACTTCAGTACCCGTCCAGAAAAATTCTTTTTCCTGAAAAATTAAAATGTGAAGCAAGAAACAGGTTTTTCGAATTTCTGACTTCTGATACAGTATTCGATCTAATTGAAGTCCACCCAACTGCTTTGAGCTTAATTATCTCTATTCCTGTAAGAGATATCAGAAACTTGTCAACTGACAAATTATTCATCATAATACCACCAATATTTTATCAATTGACAAATTGTTTATATCTTCTACAGGGATCGAGATAATTGATCTAAAAGTTACGGTATCCAGATTTTTTAGGAATCCAAAGGCTCGAAATC</canonical>
            <polymorphic>CTTCATATATGTTAGCTGGTTTCCGAGAAGCAAGAAGAAACTCCATGATCGACAGAACGAGCAAATGATGATAGCCCAGACAGCAGTAGAAGTCATCATGTCCCGCCATGGCAATGTGGTTAGCTGGAAAACAAATTTTCGCTAGAACCCAATGATTTTTCTCAACTTACAGTCATATTCTTAACAGCTACTGTTCCAACTTTATCAGTGATAAACTTTTTCTCATCCTCTGCAATGTATCTATGAGTCGCCGGACTATCACCTGCCACATACATCCATGCAAACGCCCATATGATTCCTAGAACTCCGAAAACGTGGAATGGAGCACTCCAGTGGAAATGAGAGACGAGATAAGCCGATGCTGGTAGTCCAACCATGACTCCAATCGATGCTCCTGTGAATGTAGTCGTCGCCAGTTTAGATCTCTCCAGAGGTGGCGCCCAGAATTTCCAAACTCCGTGCATTGCTGGATAACAGACGCCGAGAGCAAGTCCTTGAGMTGTTTGAATACACATGACAAAGATATCAGTGAATGGATGGAATTTCAGAGAAACTGCAGTCAAAACGTTGAGAATAGCGGCTACGAGAATTCCTAGCATGAAGAGTTTGTTGGGAGAAAATTTGGCAGCAAGGACTCCGGCGGGGATTTGAGAGGCAGCGTATCCATAGAAGAAAGAGGACTCCATCATTCCAACTTCAGTACCCGTCCAGAAAAATTCTTTTTCCTGAAAAATTAAAATGTGAAGCAAGAAACAGGTTTTTCGAATTTCTGACTTCTGATACAGTATTCGATCTAATTGAAGTCCACCCAACTGCTTTGAGCTTAATTATCTCTATTCCTGTAAGAGATATCAGAAACTTGTCAACTGACAAATTATTCATCATAATACCACCAATATTTTATCAATTGACAAATTGTTTATATCTTCTACAGGGATCGAGATAATTGATCTAAAAGTTACGGTATCCAGATTTTTTAGGAATCCAAAGGCTCGAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGGAAATGAGAGACGAGATA</pcr_primer_p1>
		<pcr_primer_p2>TATTCTCAACGTTTTGACTGC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGTGGAAATGAGAGACGAGATAAGCCGATGCTGGTAGTCCAACCATGACTCCAATCGATGCTCCTGTGAATGTAGTCGTCGCCAGTTTAGATCTCTCCAGAGGTGGCGCCCAGAATTTCCAAACTCCGTGCATTGCTGGATAACAGACGCCGAGAGCAAGTCCTTGAGATGTTTGAATACACATGACAAAGATATCAGTGAATGGATGGAATTTCAGAGAAACTGCAGTCAAAACGTTGAGAATA</canonical_amplicon>
		<polymorphic_amplicon>AGTGGAAATGAGAGACGAGATAAGCCGATGCTGGTAGTCCAACCATGACTCCAATCGATGCTCCTGTGAATGTAGTCGTCGCCAGTTTAGATCTCTCCAGAGGTGGCGCCCAGAATTTCCAAACTCCGTGCATTGCTGGATAACAGACGCCGAGAGCAAGTCCTTGAGMTGTTTGAATACACATGACAAAGATATCAGTGAATGGATGGAATTTCAGAGAAACTGCAGTCAAAACGTTGAGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6119</snp_id>
        <super_contig>c003201051.Contig1</super_contig>
        <contig_pos>54827</contig_pos>
        <strand>+</strand>
        <context>AGAGAAGAAA[C/T]GATATTGGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGATGAAAAGGGAGGAACAAGTTTCGGGCCGGGCCGAAAAGAGAAGAAA</left_flank>
        <right_flank>GATATTGGTTCGTATGACAACGAAAAACCGAATCGATTCAGCTGATAATT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACCGAAATTCGATCGAATTCCAAAAGAAATTGCAAAACCTATATGAGCCAAGAAGGCAATCTGCCATCGCACTTTTTTCAGGAAGAATTTATTCTGAAAAATAAATCTCTAATTTTTGAGTTCTTCTTTAAAACTCACGTCTTCTTGAAGTGTGTGAAGCTGTTCTCGATGTTCCCACGTCTTCGTTGAGAACGTTCTTCGGAGAGTGTCCGAGATGGCTGACGCCGATTTTTTGAGTGTTCTACTCGCCATTATGGGGGTAGACGAGCTACTTTGAGATGATTAGAATGTTGATAGAATGTCTGGAAAATTAAAATAAGAGAAATGAATGAATAACGTTTGGAATGTGGATACACATATAAAAAATCGAACTTTTTTGTGTAGTTGATAAAACAGGCGGATAACACACAAAACGAAAAAAATTGGGGATGAAAGGAGAGATGCGGAGAGATGAAAAGGGAGGAACAAGTTTCGGGCCGGGCCGAAAAGAGAAGAAATGATATTGGTTCGTATGACAACGAAAAACCGAATCGATTCAGCTGATAATTTTCTCTTATCTTTTTTCTTCCCTAAATCTCCCCGCCTGATCAGTGAGAGATGGGGGGGAGAAGAAGTACAGTAAAATGAGAAAGCGAATGAGATGAAACTGATAGGTTAGTCTCTCTCTCTTAAGATCAATGAATTTTTTGATTGTTCCATCCCCCTTCCTTTCTTTGAAATGAAAACCTTATCACAGTCACACGGCGGTGGGGAAAATCGCAACATTTCGGACTTGAATTGGGCTAATTGGGAGGTAGGAAATGATGTTTCTGATTCGTTCTAGATTGTTCTAGATTAGTAAAATAAGCTAAATGACGAGATTCGCCAAAGTAGAAGTTATAACTAGTACGCACTCGATAGTTGGCTTTCAAGCTTTGGTCAGAAGTTGAAGGGGTCAGCTTTAGACGGACATTGGCCAGGTTCTGGTTGAAACTTGTCCAAAAACGGCTGTATAGCGG</canonical>
            <polymorphic>ACACCGAAATTCGATCGAATTCCAAAAGAAATTGCAAAACCTATATGAGCCAAGAAGGCAATCTGCCATCGCACTTTTTTCAGGAAGAATTTATTCTGAAAAATAAATCTCTAATTTTTGAGTTCTTCTTTAAAACTCACGTCTTCTTGAAGTGTGTGAAGCTGTTCTCGATGTTCCCACGTCTTCGTTGAGAACGTTCTTCGGAGAGTGTCCGAGATGGCTGACGCCGATTTTTTGAGTGTTCTACTCGCCATTATGGGGGTAGACGAGCTACTTTGAGATGATTAGAATGTTGATAGAATGTCTGGAAAATTAAAATAAGAGAAATGAATGAATAACGTTTGGAATGTGGATACACATATAAAAAATCGAACTTTTTTGTGTAGTTGATAAAACAGGCGGATAACACACAAAACGAAAAAAATTGGGGATGAAAGGAGAGATGCGGAGAGATGAAAAGGGAGGAACAAGTTTCGGGCCGGGCCGAAAAGAGAAGAAAYGATATTGGTTCGTATGACAACGAAAAACCGAATCGATTCAGCTGATAATTTTCTCTTATCTTTTTTCTTCCCTAAATCTCCCCGCCTGATCAGTGAGAGATGGGGGGGAGAAGAAGTACAGTAAAATGAGAAAGCGAATGAGATGAAACTGATAGGTTAGTCTCTCTCTCTTAAGATCAATGAATTTTTTGATTGTTCCATCCCCCTTCCTTTCTTTGAAATGAAAACCTTATCACAGTCACACGGCGGTGGGGAAAATCGCAACATTTCGGACTTGAATTGGGCTAATTGGGAGGTAGGAAATGATGTTTCTGATTCGTTCTAGATTGTTCTAGATTAGTAAAATAAGCTAAATGACGAGATTCGCCAAAGTAGAAGTTATAACTAGTACGCACTCGATAGTTGGCTTTCAAGCTTTGGTCAGAAGTTGAAGGGGTCAGCTTTAGACGGACATTGGCCAGGTTCTGGTTGAAACTTGTCCAAAAACGGCTGTATAGCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATAAAACAGGCGGATAAC</pcr_primer_p1>
		<pcr_primer_p2>TCGCTTTCTCATTTTACTGTACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGATAAAACAGGCGGATAACACACAAAACGAAAAAAATTGGGGATGAAAGGAGAGATGCGGAGAGATGAAAAGGGAGGAACAAGTTTCGGGCCGGGCCGAAAAGAGAAGAAATGATATTGGTTCGTATGACAACGAAAAACCGAATCGATTCAGCTGATAATTTTCTCTTATCTTTTTTCTTCCCTAAATCTCCCCGCCTGATCAGTGAGAGATGGGGGGGAGAAGAAGTACAGTAAAATGAGAAAGCGA</canonical_amplicon>
		<polymorphic_amplicon>TGATAAAACAGGCGGATAACACACAAAACGAAAAAAATTGGGGATGAAAGGAGAGATGCGGAGAGATGAAAAGGGAGGAACAAGTTTCGGGCCGGGCCGAAAAGAGAAGAAAYGATATTGGTTCGTATGACAACGAAAAACCGAATCGATTCAGCTGATAATTTTCTCTTATCTTTTTTCTTCCCTAAATCTCCCCGCCTGATCAGTGAGAGATGGGGGGGAGAAGAAGTACAGTAAAATGAGAAAGCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6120</snp_id>
        <super_contig>c003201051.Contig1</super_contig>
        <contig_pos>62631</contig_pos>
        <strand>+</strand>
        <context>GGATTAGAAA[A/T]AAAAATCAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TACGATACGATGAGCTCGGACGGAAATTCCACGTATGTATGGATTAGAAA</left_flank>
        <right_flank>AAAAATCAGGCCTTCTAAAAGAATCTTTGATTTTGAGCCAGAAAAATAAG</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGCGCGCCAAAAAAGATTTGAATAGTTTTTTTCAGTTTGCAATGATTTTCTACTCACTCTTTCTTGATTTTCTCACTGTATTCACCGGTTTCAATGATTTTCTCACTTTTTGTCATCGTTTTATGACGAGTTTCCCATTTTTTCCAGCTCTGTACCATGGACAATCAAAGAAAGAAGCGAAACTCGATTCTCAAAGTTCGCCAAGAAACGAACTTAATGGATGTTTTGGAGGATACAACGGTGGCAACGTCAAGCGGTGCGACGAATCGACGCGTCAGCTTTCATCAGTTGAAACAAGTCAAGTAAGCTGAAAATTTGGGTTTTTTGGAATTTCTCAAATTCAAGAAAAACTACTTTTCCCTAGAAACCGCAGAAATCCATTTTTTCCAGAAATTACGATCGTGCTGGAGGACAAATCATCGATGCGACGCCGATCAAGGAGAAGGCGTACGATACGATGAGCTCGGACGGAAATTCCACGTATGTATGGATTAGAAAAAAAAATCAGGCCTTCTAAAAGAATCTTTGATTTTGAGCCAGAAAAATAAGAAAAAATAGCAGTTTTGATGATTTTTCAGCTGAAATCGACTCACATTCGGCCTCCTCTGAGCTAAAAATTTACATTTTCAACCCAAATTTTCATTTCAGATCGCACACGACTCGTCTCGACATGGATATCACTGGATTAAACAGTACACCAGTCACTCCGAAGACGCAAACTCCATTCAACGGATCCATGGATATGTCTGTGGAGAATTACGACGAAACCGCACGTCTCTTCGATATCACAAGAGACAAAACCATCTGTGTATACGAGAAAACCGTTGAGACGACGACGACAAAAGTTGTGGAGAGAGTTGTGAGAGTTCCAGAAGGTTCTTCAGGAGCCAACAATGACACTTTGGCACTCTTCAATATGACAGATCGAGCTGAGGTGGATATGTCGGTTGATGGAGGAAGTGAAGGAGCGTTGAAGGTCGATGATACGGTAAGAGAAAG</canonical>
            <polymorphic>TCGCGCGCCAAAAAAGATTTGAATAGTTTTTTTCAGTTTGCAATGATTTTCTACTCACTCTTTCTTGATTTTCTCACTGTATTCACCGGTTTCAATGATTTTCTCACTTTTTGTCATCGTTTTATGACGAGTTTCCCATTTTTTCCAGCTCTGTACCATGGACAATCAAAGAAAGAAGCGAAACTCGATTCTCAAAGTTCGCCAAGAAACGAACTTAATGGATGTTTTGGAGGATACAACGGTGGCAACGTCAAGCGGTGCGACGAATCGACGCGTCAGCTTTCATCAGTTGAAACAAGTCAAGTAAGCTGAAAATTTGGGTTTTTTGGAATTTCTCAAATTCAAGAAAAACTACTTTTCCCTAGAAACCGCAGAAATCCATTTTTTCCAGAAATTACGATCGTGCTGGAGGACAAATCATCGATGCGACGCCGATCAAGGAGAAGGCGTACGATACGATGAGCTCGGACGGAAATTCCACGTATGTATGGATTAGAAAWAAAAATCAGGCCTTCTAAAAGAATCTTTGATTTTGAGCCAGAAAAATAAGAAAAAATAGCAGTTTTGATGATTTTTCAGCTGAAATCGACTCACATTCGGCCTCCTCTGAGCTAAAAATTTACATTTTCAACCCAAATTTTCATTTCAGATCGCACACGACTCGTCTCGACATGGATATCACTGGATTAAACAGTACACCAGTCACTCCGAAGACGCAAACTCCATTCAACGGATCCATGGATATGTCTGTGGAGAATTACGACGAAACCGCACGTCTCTTCGATATCACAAGAGACAAAACCATCTGTGTATACGAGAAAACCGTTGAGACGACGACGACAAAAGTTGTGGAGAGAGTTGTGAGAGTTCCAGAAGGTTCTTCAGGAGCCAACAATGACACTTTGGCACTCTTCAATATGACAGATCGAGCTGAGGTGGATATGTCGGTTGATGGAGGAAGTGAAGGAGCGTTGAAGGTCGATGATACGGTAAGAGAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGCTGAAAATTTGGGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTTATTTTTCTGGCTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAGCTGAAAATTTGGGTTTTTTGGAATTTCTCAAATTCAAGAAAAACTACTTTTCCCTAGAAACCGCAGAAATCCATTTTTTCCAGAAATTACGATCGTGCTGGAGGACAAATCATCGATGCGACGCCGATCAAGGAGAAGGCGTACGATACGATGAGCTCGGACGGAAATTCCACGTATGTATGGATTAGAAAAAAAAATCAGGCCTTCTAAAAGAATCTTTGATTTTGAGCCAGAAAAATAAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TAAGCTGAAAATTTGGGTTTTTTGGAATTTCTCAAATTCAAGAAAAACTACTTTTCCCTAGAAACCGCAGAAATCCATTTTTTCCAGAAATTACGATCGTGCTGGAGGACAAATCATCGATGCGACGCCGATCAAGGAGAAGGCGTACGATACGATGAGCTCGGACGGAAATTCCACGTATGTATGGATTAGAAAWAAAAATCAGGCCTTCTAAAAGAATCTTTGATTTTGAGCCAGAAAAATAAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6121</snp_id>
        <super_contig>c003201051.Contig1</super_contig>
        <contig_pos>64366</contig_pos>
        <strand>+</strand>
        <context>TTCTGAGACT[A/G]CTCAGCCTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATCGAGTCGACGATCGTTTGTCCAGACAATGTGACGTTTTCTGAGACT</left_flank>
        <right_flank>CTCAGCCTGAAAATCCCGCTTATCACAGCTCCATGTTGATGTCTATGGCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCGTTGACATGGAGATGACGGGAATCGGGAATTCTGACGCCCCAGATGACACGATGGCGGTGTTCAGAACGCCAACAAGAGCTCAGCAGACGGTTCAGAAGACGTCAGGAGAGATTCCAGAATCCGTTGACATGGAGATGACGTTGCTGGCGTTGCTTCAGCCAGTTTCAGACGTCAAGGATAATTTTGATGACGTGGCAATGGATATCACTCAACAAACACTGGTCGGGGTTTCAGATGACACGATGGCGGTTTTCAAAAATCCAGCAGCAGAGAAAAAGGTGAAAATTAAAATTTTTGAGCTAAAAATTGACTGAAAACCTCTGGAAATTTGGCGATTCAAGCTAAAACTAGAAAATTTCTGCAAAATCTTAAACATTTTTTTCAAAAATTCAAGATTTCAAAATTTCCAGACTCCCGGCAAACCACTATTCGACGAAAGCATGGAAATCGAGTCGACGATCGTTTGTCCAGACAATGTGACGTTTTCTGAGACTGCTCAGCCTGAAAATCCCGCTTATCACAGCTCCATGTTGATGTCTATGGCGTCGGAAGTTTCAGAAGACGTCGTGGTTCAGAAGACGTCAGAATCTCTTCAACAGAGTTCTATGAGGATGTCGACGACGATCACTGAAGATGTGACTGCTTCTAAGAATCCAGAATCCTCCACGATTTCAGAAGTTCAGAAGATTCCAGAAGTTGTTCAGAAGACGTCAAATGGTGTAGAAGACATTCAGAATGCGTCAGAAACTCCAGAAGACGTTAGTATGGAAATCACGTCAGAAGTCGTCGAAGGTGAACGCGGAACGATGTATCAGATGTCAACGATGGATGTGGATAGTCTTCAGAAGACGTCGTTGGCATCTCCAAAGATTCAGATGACGTCGTTCACCGATACTTCTGAAAAAATGGGCGGAGTTTCGGAAACGTCATTGATCCAAACGATGATGATCGAAGCGTCGGAATCCATGGAATGTTCAGAAGCTCCAGAAGATGTT</canonical>
            <polymorphic>ATCCGTTGACATGGAGATGACGGGAATCGGGAATTCTGACGCCCCAGATGACACGATGGCGGTGTTCAGAACGCCAACAAGAGCTCAGCAGACGGTTCAGAAGACGTCAGGAGAGATTCCAGAATCCGTTGACATGGAGATGACGTTGCTGGCGTTGCTTCAGCCAGTTTCAGACGTCAAGGATAATTTTGATGACGTGGCAATGGATATCACTCAACAAACACTGGTCGGGGTTTCAGATGACACGATGGCGGTTTTCAAAAATCCAGCAGCAGAGAAAAAGGTGAAAATTAAAATTTTTGAGCTAAAAATTGACTGAAAACCTCTGGAAATTTGGCGATTCAAGCTAAAACTAGAAAATTTCTGCAAAATCTTAAACATTTTTTTCAAAAATTCAAGATTTCAAAATTTCCAGACTCCCGGCAAACCACTATTCGACGAAAGCATGGAAATCGAGTCGACGATCGTTTGTCCAGACAATGTGACGTTTTCTGAGACTRCTCAGCCTGAAAATCCCGCTTATCACAGCTCCATGTTGATGTCTATGGCGTCGGAAGTTTCAGAAGACGTCGTGGTTCAGAAGACGTCAGAATCTCTTCAACAGAGTTCTATGAGGATGTCGACGACGATCACTGAAGATGTGACTGCTTCTAAGAATCCAGAATCCTCCACGATTTCAGAAGTTCAGAAGATTCCAGAAGTTGTTCAGAAGACGTCAAATGGTGTAGAAGACATTCAGAATGCGTCAGAAACTCCAGAAGACGTTAGTATGGAAATCACGTCAGAAGTCGTCGAAGGTGAACGCGGAACGATGTATCAGATGTCAACGATGGATGTGGATAGTCTTCAGAAGACGTCGTTGGCATCTCCAAAGATTCAGATGACGTCGTTCACCGATACTTCTGAAAAAATGGGCGGAGTTTCGGAAACGTCATTGATCCAAACGATGATGATCGAAGCGTCGGAATCCATGGAATGTTCAGAAGCTCCAGAAGATGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCTNAGC</site>
                <isoschizomers>
                    <enzyme>BlpI</enzyme>
                    <enzyme>Bpu1102I</enzyme>
                    <enzyme>Bsp1720I</enzyme>
                    <enzyme>CelII</enzyme>
                    <enzyme>EspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 417 84</canonical_bands>
                <polymorphic_bands>916 84</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTTCTGCAAAATCTTAAACA</pcr_primer_p1>
		<pcr_primer_p2>TGAAGAGATTCTGACGTCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAATTTCTGCAAAATCTTAAACATTTTTTTCAAAAATTCAAGATTTCAAAATTTCCAGACTCCCGGCAAACCACTATTCGACGAAAGCATGGAAATCGAGTCGACGATCGTTTGTCCAGACAATGTGACGTTTTCTGAGACTGCTCAGCCTGAAAATCCCGCTTATCACAGCTCCATGTTGATGTCTATGGCGTCGGAAGTTTCAGAAGACGTCGTGGTTCAGAAGACGTCAGAATCTCTTCA</canonical_amplicon>
		<polymorphic_amplicon>AAATTTCTGCAAAATCTTAAACATTTTTTTCAAAAATTCAAGATTTCAAAATTTCCAGACTCCCGGCAAACCACTATTCGACGAAAGCATGGAAATCGAGTCGACGATCGTTTGTCCAGACAATGTGACGTTTTCTGAGACTRCTCAGCCTGAAAATCCCGCTTATCACAGCTCCATGTTGATGTCTATGGCGTCGGAAGTTTCAGAAGACGTCGTGGTTCAGAAGACGTCAGAATCTCTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6122</snp_id>
        <super_contig>c003201051.Contig1</super_contig>
        <contig_pos>64146</contig_pos>
        <strand>+</strand>
        <context>CAGCAGAGAA[A/G]AAGGTGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGGTTTCAGATGACACGATGGCGGTTTTCAAAAATCCAGCAGCAGAGAA</left_flank>
        <right_flank>AAGGTGAAAATTAAAATTTTTGAGCTAAAAATTGACTGAAAACCTCTGGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGATATGGATATCACCAGCAACGAGATGATGGCCGCATTCAAATCTCCAAAAATTATGTCTTCTGTCCTCGTCGCCGCCGTCAAGGACTCCGATGACATGGATTTGACGGGGCTTGTGAACACTGCAGCCGAAGACGTTGCAGATGACACGATGGCGGTGTTCAGAACACCAACAAGGGCTCAGACGACGATTCAGAAGACGTCGGGAGAGATTCCAGAATCCGTTGACATGGAGATGACGGGAATCGGGAATTCTGACGCCCCAGATGACACGATGGCGGTGTTCAGAACGCCAACAAGAGCTCAGCAGACGGTTCAGAAGACGTCAGGAGAGATTCCAGAATCCGTTGACATGGAGATGACGTTGCTGGCGTTGCTTCAGCCAGTTTCAGACGTCAAGGATAATTTTGATGACGTGGCAATGGATATCACTCAACAAACACTGGTCGGGGTTTCAGATGACACGATGGCGGTTTTCAAAAATCCAGCAGCAGAGAAAAAGGTGAAAATTAAAATTTTTGAGCTAAAAATTGACTGAAAACCTCTGGAAATTTGGCGATTCAAGCTAAAACTAGAAAATTTCTGCAAAATCTTAAACATTTTTTTCAAAAATTCAAGATTTCAAAATTTCCAGACTCCCGGCAAACCACTATTCGACGAAAGCATGGAAATCGAGTCGACGATCGTTTGTCCAGACAATGTGACGTTTTCTGAGACTGCTCAGCCTGAAAATCCCGCTTATCACAGCTCCATGTTGATGTCTATGGCGTCGGAAGTTTCAGAAGACGTCGTGGTTCAGAAGACGTCAGAATCTCTTCAACAGAGTTCTATGAGGATGTCGACGACGATCACTGAAGATGTGACTGCTTCTAAGAATCCAGAATCCTCCACGATTTCAGAAGTTCAGAAGATTCCAGAAGTTGTTCAGAAGACGTCAAATGGTGTAGAAGACATTCAGAATGCGTCAGAAACTCCAGAAGACGTTAGTATGGAAATCAC</canonical>
            <polymorphic>TGGATATGGATATCACCAGCAACGAGATGATGGCCGCATTCAAATCTCCAAAAATTATGTCTTCTGTCCTCGTCGCCGCCGTCAAGGACTCCGATGACATGGATTTGACGGGGCTTGTGAACACTGCAGCCGAAGACGTTGCAGATGACACGATGGCGGTGTTCAGAACACCAACAAGGGCTCAGACGACGATTCAGAAGACGTCGGGAGAGATTCCAGAATCCGTTGACATGGAGATGACGGGAATCGGGAATTCTGACGCCCCAGATGACACGATGGCGGTGTTCAGAACGCCAACAAGAGCTCAGCAGACGGTTCAGAAGACGTCAGGAGAGATTCCAGAATCCGTTGACATGGAGATGACGTTGCTGGCGTTGCTTCAGCCAGTTTCAGACGTCAAGGATAATTTTGATGACGTGGCAATGGATATCACTCAACAAACACTGGTCGGGGTTTCAGATGACACGATGGCGGTTTTCAAAAATCCAGCAGCAGAGAARAAGGTGAAAATTAAAATTTTTGAGCTAAAAATTGACTGAAAACCTCTGGAAATTTGGCGATTCAAGCTAAAACTAGAAAATTTCTGCAAAATCTTAAACATTTTTTTCAAAAATTCAAGATTTCAAAATTTCCAGACTCCCGGCAAACCACTATTCGACGAAAGCATGGAAATCGAGTCGACGATCGTTTGTCCAGACAATGTGACGTTTTCTGAGACTGCTCAGCCTGAAAATCCCGCTTATCACAGCTCCATGTTGATGTCTATGGCGTCGGAAGTTTCAGAAGACGTCGTGGTTCAGAAGACGTCAGAATCTCTTCAACAGAGTTCTATGAGGATGTCGACGACGATCACTGAAGATGTGACTGCTTCTAAGAATCCAGAATCCTCCACGATTTCAGAAGTTCAGAAGATTCCAGAAGTTGTTCAGAAGACGTCAAATGGTGTAGAAGACATTCAGAATGCGTCAGAAACTCCAGAAGACGTTAGTATGGAAATCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTTCAGACGTCAAGGATAAT</pcr_primer_p1>
		<pcr_primer_p2>TGGAAATTTTGAAATCTTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGTTTCAGACGTCAAGGATAATTTTGATGACGTGGCAATGGATATCACTCAACAAACACTGGTCGGGGTTTCAGATGACACGATGGCGGTTTTCAAAAATCCAGCAGCAGAGAAAAAGGTGAAAATTAAAATTTTTGAGCTAAAAATTGACTGAAAACCTCTGGAAATTTGGCGATTCAAGCTAAAACTAGAAAATTTCTGCAAAATCTTAAACATTTTTTTCAAAAATTCAAGATTTCAAAATTTCCA</canonical_amplicon>
		<polymorphic_amplicon>AGTTTCAGACGTCAAGGATAATTTTGATGACGTGGCAATGGATATCACTCAACAAACACTGGTCGGGGTTTCAGATGACACGATGGCGGTTTTCAAAAATCCAGCAGCAGAGAARAAGGTGAAAATTAAAATTTTTGAGCTAAAAATTGACTGAAAACCTCTGGAAATTTGGCGATTCAAGCTAAAACTAGAAAATTTCTGCAAAATCTTAAACATTTTTTTCAAAAATTCAAGATTTCAAAATTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6123</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>55363</contig_pos>
        <strand>+</strand>
        <context>GTGACTCTAA[C/T]CACTGAATAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGATTTCGAACTATTTGGATGTCGTTGTCATGGAGCAGTGACTCTAA</left_flank>
        <right_flank>CACTGAATAGTTTGATCGACTGGCGGGAGTGGTTCTGATTCTTCGTAGTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTCAAGTACTTGCAATGACGTTCCGATTGAAAAGTTTTGTAACTGAGCTGATAGCCGTAGCTGAGCTGACTGATTGATTCATAATATGTTGAAGTTATTTTAGAGTACACCCTCTGATAGAACGCGAAGTATCAAAAAGTGACCAACTGACAAAATGTATTTTATAACATAAAAAATGCTTTATTACCAAAATTTTTTATTACTACGATTTATAGCAGTAGTCCACTCTTCTCAGTCTTGGTACATCTTGAGGAACAATTCGATAACGGTCTTTGTTGAAAACATAAGGTTTTCAAAACTGAAAAATCTCTCATTGGTGTCGATTAAAAAAAAAAGAGCTTATCGTCATGGTTTTCATAAAAGTATGATTGTGGTGGGTTATCAATTAAAAATTTGAATGCATCTCCGCTGCTTTGAAACCCTTCCTCCGGAATTTCATGTGACGCGTTTTGATTTCGAACTATTTGGATGTCGTTGTCATGGAGCAGTGACTCTAATCACTGAATAGTTTGATCGACTGGCGGGAGTGGTTCTGATTCTTCGTAGTCCATTGGTTTTTCTTTAATGGTCTGGAACCGACGAAGAAGTTGAAGGCTGCCGGTTTTATCCAATTCTGAAAATAGAAATTGGTAAGATTTGTTCAGCTTTTTGTTTTTGAAGCAGCAGCTTTGTTGGCACCGATGGCCCTGAGAATTTAAATTATTTCATTGAGGCGCTTTTTTGACGAAATCGCGCAGTGGGCTTTTTGACGGGCTACATATTTTGAAATTTGAGCCAAATGTGGACGAAATGGTTGAAAATGAAAATAGACTGGATGTGTTCCATGTTCAGTTCTTTTTGATAACATTTTGACGTTTTTTTTTGCAAAAAGAATACTTTTGGGTTCTTACGTCAAAAATAACTGAAGCAGAAATTTCAGGTAAAAAATCCCAACGTTTCCAAATTCCAAATTAAAAATATAGCAATGAAATTCTGGAATTTTGAATTTTGAATTCAAA</canonical>
            <polymorphic>CTGTCAAGTACTTGCAATGACGTTCCGATTGAAAAGTTTTGTAACTGAGCTGATAGCCGTAGCTGAGCTGACTGATTGATTCATAATATGTTGAAGTTATTTTAGAGTACACCCTCTGATAGAACGCGAAGTATCAAAAAGTGACCAACTGACAAAATGTATTTTATAACATAAAAAATGCTTTATTACCAAAATTTTTTATTACTACGATTTATAGCAGTAGTCCACTCTTCTCAGTCTTGGTACATCTTGAGGAACAATTCGATAACGGTCTTTGTTGAAAACATAAGGTTTTCAAAACTGAAAAATCTCTCATTGGTGTCGATTAAAAAAAAAAGAGCTTATCGTCATGGTTTTCATAAAAGTATGATTGTGGTGGGTTATCAATTAAAAATTTGAATGCATCTCCGCTGCTTTGAAACCCTTCCTCCGGAATTTCATGTGACGCGTTTTGATTTCGAACTATTTGGATGTCGTTGTCATGGAGCAGTGACTCTAAYCACTGAATAGTTTGATCGACTGGCGGGAGTGGTTCTGATTCTTCGTAGTCCATTGGTTTTTCTTTAATGGTCTGGAACCGACGAAGAAGTTGAAGGCTGCCGGTTTTATCCAATTCTGAAAATAGAAATTGGTAAGATTTGTTCAGCTTTTTGTTTTTGAAGCAGCAGCTTTGTTGGCACCGATGGCCCTGAGAATTTAAATTATTTCATTGAGGCGCTTTTTTGACGAAATCGCGCAGTGGGCTTTTTGACGGGCTACATATTTTGAAATTTGAGCCAAATGTGGACGAAATGGTTGAAAATGAAAATAGACTGGATGTGTTCCATGTTCAGTTCTTTTTGATAACATTTTGACGTTTTTTTTTGCAAAAAGAATACTTTTGGGTTCTTACGTCAAAAATAACTGAAGCAGAAATTTCAGGTAAAAAATCCCAACGTTTCCAAATTCCAAATTAAAAATATAGCAATGAAATTCTGGAATTTTGAATTTTGAATTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCTCTCATTGGTGTCGATTA</pcr_primer_p1>
		<pcr_primer_p2>ATGGACTACGAAGAATCAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATCTCTCATTGGTGTCGATTAAAAAAAAAAGAGCTTATCGTCATGGTTTTCATAAAAGTATGATTGTGGTGGGTTATCAATTAAAAATTTGAATGCATCTCCGCTGCTTTGAAACCCTTCCTCCGGAATTTCATGTGACGCGTTTTGATTTCGAACTATTTGGATGTCGTTGTCATGGAGCAGTGACTCTAATCACTGAATAGTTTGATCGACTGGCGGGAGTGGTTCTGATTCTTCGTAGTCCAT</canonical_amplicon>
		<polymorphic_amplicon>AATCTCTCATTGGTGTCGATTAAAAAAAAAAGAGCTTATCGTCATGGTTTTCATAAAAGTATGATTGTGGTGGGTTATCAATTAAAAATTTGAATGCATCTCCGCTGCTTTGAAACCCTTCCTCCGGAATTTCATGTGACGCGTTTTGATTTCGAACTATTTGGATGTCGTTGTCATGGAGCAGTGACTCTAAYCACTGAATAGTTTGATCGACTGGCGGGAGTGGTTCTGATTCTTCGTAGTCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6124</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>59387</contig_pos>
        <strand></strand>
        <context>CTCTTATTGC[A/T]ATTTTGCTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCAAAACTTGTTTATTGTGATGTCACAATACATGGTATCCCTCTTATTGC</left_flank>
        <right_flank>ATTTTGCTGCACAAACAGGAATCACAACAAGTGACAAGATGATGATAGAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACCTCTACACTACTCAACTACGAAACCTCAAGAAAGCAGTCGACCGTTCGGCCCTGAAAGACAAGAAAGTGTACTATCAACATGATAACGCTCGCCCACATGTTTCGAAACAAGTGAAGCAGGAGCTGATGGGATATGGATGGAATGTTCTCCCTCACCCCCCGTATTCTCCTGATCTTGCTCCTTCCGACTATTGGTTATTTGGCGATATGACACGTGCCTTCGAAGGAAGAAGCTTCAATTCCCGTGGAGCGGTCGAAGCGGCACTCAAACAATACTTTGCCTCACGCCCGGCTGGATTCTACCGCAATGGAATCCATAAATTGAGGGAACGTTGGAGACATGTTGTTGATAATGATGGACAATATAATTAATTATTCGGTTATTTTTTCTTTGAGAAATAAACTATTGAAAAAGTGACAAAGACTTTCCCGCCAACCTAATAAATCCAAAACTTGTTTATTGTGATGTCACAATACATGGTATCCCTCTTATTGCAATTTTGCTGCACAAACAGGAATCACAACAAGTGACAAGATGATGATAGAAACTTGTCAGAAGAAATTTTTTTCAGGTATCATAGTTCAAAATCATTGAAATTAGGTCATATTTTATCAGAAGTTTGTTGATGCCAAAAAAAGGAAGTTCGCTTTCTGGGATCTCAATATTGAATTTGGCATAAAATAACGGTCAATACTGAAAACAGCGGAGAATTTTGTACTAAAAATTTTAAAAAATAGGTCTTTCAAAAATGGGCATACAGCTGAAAAATTAAGAATTTTCAAAAAATTCTGTGAGTTCAAAGTTTCCAGGCTAGCTCTGTTTTACAATCTCCAAAATTTTCGAAGGGAACTGAAACATCACAACCGGGCTCCATTTTTGAAAATTGTCAAAGAAAAATATGTTTGTTCACATTTCATTGACTGGTACTGTATAATTTATTGATTTTTCTTTAATGCTATGATAAATTTATTTCTTAGGAACTAGTGTAAAAATGTC</canonical>
            <polymorphic>GACCTCTACACTACTCAACTACGAAACCTCAAGAAAGCAGTCGACCGTTCGGCCCTGAAAGACAAGAAAGTGTACTATCAACATGATAACGCTCGCCCACATGTTTCGAAACAAGTGAAGCAGGAGCTGATGGGATATGGATGGAATGTTCTCCCTCACCCCCCGTATTCTCCTGATCTTGCTCCTTCCGACTATTGGTTATTTGGCGATATGACACGTGCCTTCGAAGGAAGAAGCTTCAATTCCCGTGGAGCGGTCGAAGCGGCACTCAAACAATACTTTGCCTCACGCCCGGCTGGATTCTACCGCAATGGAATCCATAAATTGAGGGAACGTTGGAGACATGTTGTTGATAATGATGGACAATATAATTAATTATTCGGTTATTTTTTCTTTGAGAAATAAACTATTGAAAAAGTGACAAAGACTTTCCCGCCAACCTAATAAATCCAAAACTTGTTTATTGTGATGTCACAATACATGGTATCCCTCTTATTGCWATTTTGCTGCACAAACAGGAATCACAACAAGTGACAAGATGATGATAGAAACTTGTCAGAAGAAATTTTTTTCAGGTATCATAGTTCAAAATCATTGAAATTAGGTCATATTTTATCAGAAGTTTGTTGATGCCAAAAAAAGGAAGTTCGCTTTCTGGGATCTCAATATTGAATTTGGCATAAAATAACGGTCAATACTGAAAACAGCGGAGAATTTTGTACTAAAAATTTTAAAAAATAGGTCTTTCAAAAATGGGCATACAGCTGAAAAATTAAGAATTTTCAAAAAATTCTGTGAGTTCAAAGTTTCCAGGCTAGCTCTGTTTTACAATCTCCAAAATTTTCGAAGGGAACTGAAACATCACAACCGGGCTCCATTTTTGAAAATTGTCAAAGAAAAATATGTTTGTTCACATTTCATTGACTGGTACTGTATAATTTATTGATTTTTCTTTAATGCTATGATAAATTTATTTCTTAGGAACTAGTGTAAAAATGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>498 491 11</canonical_bands>
                <polymorphic_bands>509 491</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>240 126 82 73 64 51 50 47 47 44 41 35 33 31 14 11 7 4</canonical_bands>
                <polymorphic_bands>240 190 82 73 51 50 47 47 44 41 35 33 31 14 11 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCCAAAACTTGTTTATTGTGA</pcr_primer_p1>
		<pcr_primer_p2>CAGTATTGACCGTTATTTTATGC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AATCCAAAACTTGTTTATTGTGATGTCACAATACATGGTATCCCTCTTATTGCAATTTTGCTGCACAAACAGGAATCACAACAAGTGACAAGATGATGATAGAAACTTGTCAGAAGAAATTTTTTTCAGGTATCATAGTTCAAAATCATTGAAATTAGGTCATATTTTATCAGAAGTTTGTTGATGCCAAAAAAAGGAAGTTCGCTTTCTGGGATCTCAATATTGAATTTGGCATAAAATAACGGTCAATACTG</canonical_amplicon>
		<polymorphic_amplicon>AATCCAAAACTTGTTTATTGTGATGTCACAATACATGGTATCCCTCTTATTGCWATTTTGCTGCACAAACAGGAATCACAACAAGTGACAAGATGATGATAGAAACTTGTCAGAAGAAATTTTTTTCAGGTATCATAGTTCAAAATCATTGAAATTAGGTCATATTTTATCAGAAGTTTGTTGATGCCAAAAAAAGGAAGTTCGCTTTCTGGGATCTCAATATTGAATTTGGCATAAAATAACGGTCAATACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6125</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>100676</contig_pos>
        <strand>+</strand>
        <context>AAGAAAAATT[A/G]AAAACTTTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTGGGGGGAAAGGTATTCTCTTATTAATTGGAAAATACAAGAAAAATT</left_flank>
        <right_flank>AAAACTTTATCTTTTGAAATATCAAAAGAAAAAGAAAAATCACCATGGGC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTAGAGACAAAAAAATTGAAAATGCGCTAATAACACTTGGGAACATGAGTCAGCTCAAGAGAAAGTTTAAACAAAATGTGTTGGTGAAGACGCGAAGCTGTCACAAAAAAGAGGTGAAGTAGTGCTTCACGTGGAAGAGAGTATAGAATTGAATACGAAGAATAAGATAATGCCAATCTCGGTAAGTATATTAATTGACAGTTTTCTGTCTTCATTAGCGTGGTGTGACATTGGTTAATGTTCTTTTTTCTTCATGACCGTGATAGGCATGCAAAAACGCAAAACGCTAAACAGTTTGCTGCCCTTTTCGAAGATGTGTCCCCATTAATTTTTCTCACCTTGGTCACACGCAACAAAAAGACAACAAGTAGAATAAAAGTACACAACAGAAAAGATAGCGAGTCACCTACTGAGAACAGCGTTTTTGTTGATTTTATACTGCGGGAAATATTGGGGGGAAAGGTATTCTCTTATTAATTGGAAAATACAAGAAAAATTGAAAACTTTATCTTTTGAAATATCAAAAGAAAAAGAAAAATCACCATGGGCAAGAAGAGATAGAATATCTTTGCTCTCTACCACAAAAATCACTTTTTTTGCTTGATTCTCAATGTTATCTTTCCGGTTAGTCTTTTTAAAATTACGGTAACAAAAGTGTCAATATGCATTTTTTTTCCTTTATTGCATCTCAATTCGGCGAAGTTACAGTACCAGCCAATAATATATGCAAAAGCGCATTTTTCAGTTGATTTTGACTTTTTTCAGGTGTCAGGAACACTACTGTCAAGTGTCCGATCACTTTGAAAATTTTGCAAGTATAAAAAAGACTCGATTAGAAATTTCACATTTACCTATTTTTCGAAAATTCCTTGTTTTTCAGATATTTGACGATTTATGAAGAACAACCCTTTTTCTCCTGTTTTTGAACTTTAAGCGTGCAAACAGGGAAGTGTCTTCAGAATTCGGAAATATCTGAAAAACTAGGAATTTTCAAAAATT</canonical>
            <polymorphic>GCTAGAGACAAAAAAATTGAAAATGCGCTAATAACACTTGGGAACATGAGTCAGCTCAAGAGAAAGTTTAAACAAAATGTGTTGGTGAAGACGCGAAGCTGTCACAAAAAAGAGGTGAAGTAGTGCTTCACGTGGAAGAGAGTATAGAATTGAATACGAAGAATAAGATAATGCCAATCTCGGTAAGTATATTAATTGACAGTTTTCTGTCTTCATTAGCGTGGTGTGACATTGGTTAATGTTCTTTTTTCTTCATGACCGTGATAGGCATGCAAAAACGCAAAACGCTAAACAGTTTGCTGCCCTTTTCGAAGATGTGTCCCCATTAATTTTTCTCACCTTGGTCACACGCAACAAAAAGACAACAAGTAGAATAAAAGTACACAACAGAAAAGATAGCGAGTCACCTACTGAGAACAGCGTTTTTGTTGATTTTATACTGCGGGAAATATTGGGGGGAAAGGTATTCTCTTATTAATTGGAAAATACAAGAAAAATTRAAAACTTTATCTTTTGAAATATCAAAAGAAAAAGAAAAATCACCATGGGCAAGAAGAGATAGAATATCTTTGCTCTCTACCACAAAAATCACTTTTTTTGCTTGATTCTCAATGTTATCTTTCCGGTTAGTCTTTTTAAAATTACGGTAACAAAAGTGTCAATATGCATTTTTTTTCCTTTATTGCATCTCAATTCGGCGAAGTTACAGTACCAGCCAATAATATATGCAAAAGCGCATTTTTCAGTTGATTTTGACTTTTTTCAGGTGTCAGGAACACTACTGTCAAGTGTCCGATCACTTTGAAAATTTTGCAAGTATAAAAAAGACTCGATTAGAAATTTCACATTTACCTATTTTTCGAAAATTCCTTGTTTTTCAGATATTTGACGATTTATGAAGAACAACCCTTTTTCTCCTGTTTTTGAACTTTAAGCGTGCAAACAGGGAAGTGTCTTCAGAATTCGGAAATATCTGAAAAACTAGGAATTTTCAAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAGATAGCGAGTCACCTACT</pcr_primer_p1>
		<pcr_primer_p2>TTAAAAAGACTAACCGGAAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAAGATAGCGAGTCACCTACTGAGAACAGCGTTTTTGTTGATTTTATACTGCGGGAAATATTGGGGGGAAAGGTATTCTCTTATTAATTGGAAAATACAAGAAAAATTGAAAACTTTATCTTTTGAAATATCAAAAGAAAAAGAAAAATCACCATGGGCAAGAAGAGATAGAATATCTTTGCTCTCTACCACAAAAATCACTTTTTTTGCTTGATTCTCAATGTTATCTTTCCGGTTAGTCTTTTTAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAGATAGCGAGTCACCTACTGAGAACAGCGTTTTTGTTGATTTTATACTGCGGGAAATATTGGGGGGAAAGGTATTCTCTTATTAATTGGAAAATACAAGAAAAATTRAAAACTTTATCTTTTGAAATATCAAAAGAAAAAGAAAAATCACCATGGGCAAGAAGAGATAGAATATCTTTGCTCTCTACCACAAAAATCACTTTTTTTGCTTGATTCTCAATGTTATCTTTCCGGTTAGTCTTTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6126</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>100704</contig_pos>
        <strand></strand>
        <context>AATATCAAAA[G/A]AAAAAGAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTGGAAAATACAAGAAAAATTGAAAACTTTATCTTTTGAAATATCAAAA</left_flank>
        <right_flank>AAAAAGAAAAATCACCATGGGCAAGAAGAGATAGAATATCTTTGCTCTCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATAACACTTGGGAACATGAGTCAGCTCAAGAGAAAGTTTAAACAAAATGTGTTGGTGAAGACGCGAAGCTGTCACAAAAAAGAGGTGAAGTAGTGCTTCACGTGGAAGAGAGTATAGAATTGAATACGAAGAATAAGATAATGCCAATCTCGGTAAGTATATTAATTGACAGTTTTCTGTCTTCATTAGCGTGGTGTGACATTGGTTAATGTTCTTTTTTCTTCATGACCGTGATAGGCATGCAAAAACGCAAAACGCTAAACAGTTTGCTGCCCTTTTCGAAGATGTGTCCCCATTAATTTTTCTCACCTTGGTCACACGCAACAAAAAGACAACAAGTAGAATAAAAGTACACAACAGAAAAGATAGCGAGTCACCTACTGAGAACAGCGTTTTTGTTGATTTTATACTGCGGGAAATATTGGGGGGAAAGGTATTCTCTTATTAATTGGAAAATACAAGAAAAATTGAAAACTTTATCTTTTGAAATATCAAAAGAAAAAGAAAAATCACCATGGGCAAGAAGAGATAGAATATCTTTGCTCTCTACCACAAAAATCACTTTTTTTGCTTGATTCTCAATGTTATCTTTCCGGTTAGTCTTTTTAAAATTACGGTAACAAAAGTGTCAATATGCATTTTTTTTCCTTTATTGCATCTCAATTCGGCGAAGTTACAGTACCAGCCAATAATATATGCAAAAGCGCATTTTTCAGTTGATTTTGACTTTTTTCAGGTGTCAGGAACACTACTGTCAAGTGTCCGATCACTTTGAAAATTTTGCAAGTATAAAAAAGACTCGATTAGAAATTTCACATTTACCTATTTTTCGAAAATTCCTTGTTTTTCAGATATTTGACGATTTATGAAGAACAACCCTTTTTCTCCTGTTTTTGAACTTTAAGCGTGCAAACAGGGAAGTGTCTTCAGAATTCGGAAATATCTGAAAAACTAGGAATTTTCAAAAATTCTGTAAATCTGAAATTTTCAATTTAGGT</canonical>
            <polymorphic>TAATAACACTTGGGAACATGAGTCAGCTCAAGAGAAAGTTTAAACAAAATGTGTTGGTGAAGACGCGAAGCTGTCACAAAAAAGAGGTGAAGTAGTGCTTCACGTGGAAGAGAGTATAGAATTGAATACGAAGAATAAGATAATGCCAATCTCGGTAAGTATATTAATTGACAGTTTTCTGTCTTCATTAGCGTGGTGTGACATTGGTTAATGTTCTTTTTTCTTCATGACCGTGATAGGCATGCAAAAACGCAAAACGCTAAACAGTTTGCTGCCCTTTTCGAAGATGTGTCCCCATTAATTTTTCTCACCTTGGTCACACGCAACAAAAAGACAACAAGTAGAATAAAAGTACACAACAGAAAAGATAGCGAGTCACCTACTGAGAACAGCGTTTTTGTTGATTTTATACTGCGGGAAATATTGGGGGGAAAGGTATTCTCTTATTAATTGGAAAATACAAGAAAAATTGAAAACTTTATCTTTTGAAATATCAAAARAAAAAGAAAAATCACCATGGGCAAGAAGAGATAGAATATCTTTGCTCTCTACCACAAAAATCACTTTTTTTGCTTGATTCTCAATGTTATCTTTCCGGTTAGTCTTTTTAAAATTACGGTAACAAAAGTGTCAATATGCATTTTTTTTCCTTTATTGCATCTCAATTCGGCGAAGTTACAGTACCAGCCAATAATATATGCAAAAGCGCATTTTTCAGTTGATTTTGACTTTTTTCAGGTGTCAGGAACACTACTGTCAAGTGTCCGATCACTTTGAAAATTTTGCAAGTATAAAAAAGACTCGATTAGAAATTTCACATTTACCTATTTTTCGAAAATTCCTTGTTTTTCAGATATTTGACGATTTATGAAGAACAACCCTTTTTCTCCTGTTTTTGAACTTTAAGCGTGCAAACAGGGAAGTGTCTTCAGAATTCGGAAATATCTGAAAAACTAGGAATTTTCAAAAATTCTGTAAATCTGAAATTTTCAATTTAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAGATAGCGAGTCACCTACT</pcr_primer_p1>
		<pcr_primer_p2>TTAAAAAGACTAACCGGAAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAAGATAGCGAGTCACCTACTGAGAACAGCGTTTTTGTTGATTTTATACTGCGGGAAATATTGGGGGGAAAGGTATTCTCTTATTAATTGGAAAATACAAGAAAAATTGAAAACTTTATCTTTTGAAATATCAAAAGAAAAAGAAAAATCACCATGGGCAAGAAGAGATAGAATATCTTTGCTCTCTACCACAAAAATCACTTTTTTTGCTTGATTCTCAATGTTATCTTTCCGGTTAGTCTTTTTAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAGATAGCGAGTCACCTACTGAGAACAGCGTTTTTGTTGATTTTATACTGCGGGAAATATTGGGGGGAAAGGTATTCTCTTATTAATTGGAAAATACAAGAAAAATTGAAAACTTTATCTTTTGAAATATCAAAARAAAAAGAAAAATCACCATGGGCAAGAAGAGATAGAATATCTTTGCTCTCTACCACAAAAATCACTTTTTTTGCTTGATTCTCAATGTTATCTTTCCGGTTAGTCTTTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6127</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>100828</contig_pos>
        <strand>+</strand>
        <context>TTACGGTAAC[A/T]AAAGTGTCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGATTCTCAATGTTATCTTTCCGGTTAGTCTTTTTAAAATTACGGTAAC</left_flank>
        <right_flank>AAAGTGTCAATATGCATTTTTTTTCCTTTATTGCATCTCAATTCGGCGAA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATACGAAGAATAAGATAATGCCAATCTCGGTAAGTATATTAATTGACAGTTTTCTGTCTTCATTAGCGTGGTGTGACATTGGTTAATGTTCTTTTTTCTTCATGACCGTGATAGGCATGCAAAAACGCAAAACGCTAAACAGTTTGCTGCCCTTTTCGAAGATGTGTCCCCATTAATTTTTCTCACCTTGGTCACACGCAACAAAAAGACAACAAGTAGAATAAAAGTACACAACAGAAAAGATAGCGAGTCACCTACTGAGAACAGCGTTTTTGTTGATTTTATACTGCGGGAAATATTGGGGGGAAAGGTATTCTCTTATTAATTGGAAAATACAAGAAAAATTGAAAACTTTATCTTTTGAAATATCAAAAGAAAAAGAAAAATCACCATGGGCAAGAAGAGATAGAATATCTTTGCTCTCTACCACAAAAATCACTTTTTTTGCTTGATTCTCAATGTTATCTTTCCGGTTAGTCTTTTTAAAATTACGGTAACAAAAGTGTCAATATGCATTTTTTTTCCTTTATTGCATCTCAATTCGGCGAAGTTACAGTACCAGCCAATAATATATGCAAAAGCGCATTTTTCAGTTGATTTTGACTTTTTTCAGGTGTCAGGAACACTACTGTCAAGTGTCCGATCACTTTGAAAATTTTGCAAGTATAAAAAAGACTCGATTAGAAATTTCACATTTACCTATTTTTCGAAAATTCCTTGTTTTTCAGATATTTGACGATTTATGAAGAACAACCCTTTTTCTCCTGTTTTTGAACTTTAAGCGTGCAAACAGGGAAGTGTCTTCAGAATTCGGAAATATCTGAAAAACTAGGAATTTTCAAAAATTCTGTAAATCTGAAATTTTCAATTTAGGTCTGTTGTATAATCTCTAAATCTTTCAAAATGATCGGACCCTTGACAGCCAAGGTTCAGACTCTGGAAAATGGTCTAAATCAACTGAAAACACGTTTTTGTATATCTTTTTGACCGGTACTGTAC</canonical>
            <polymorphic>AATACGAAGAATAAGATAATGCCAATCTCGGTAAGTATATTAATTGACAGTTTTCTGTCTTCATTAGCGTGGTGTGACATTGGTTAATGTTCTTTTTTCTTCATGACCGTGATAGGCATGCAAAAACGCAAAACGCTAAACAGTTTGCTGCCCTTTTCGAAGATGTGTCCCCATTAATTTTTCTCACCTTGGTCACACGCAACAAAAAGACAACAAGTAGAATAAAAGTACACAACAGAAAAGATAGCGAGTCACCTACTGAGAACAGCGTTTTTGTTGATTTTATACTGCGGGAAATATTGGGGGGAAAGGTATTCTCTTATTAATTGGAAAATACAAGAAAAATTGAAAACTTTATCTTTTGAAATATCAAAAGAAAAAGAAAAATCACCATGGGCAAGAAGAGATAGAATATCTTTGCTCTCTACCACAAAAATCACTTTTTTTGCTTGATTCTCAATGTTATCTTTCCGGTTAGTCTTTTTAAAATTACGGTAACWAAAGTGTCAATATGCATTTTTTTTCCTTTATTGCATCTCAATTCGGCGAAGTTACAGTACCAGCCAATAATATATGCAAAAGCGCATTTTTCAGTTGATTTTGACTTTTTTCAGGTGTCAGGAACACTACTGTCAAGTGTCCGATCACTTTGAAAATTTTGCAAGTATAAAAAAGACTCGATTAGAAATTTCACATTTACCTATTTTTCGAAAATTCCTTGTTTTTCAGATATTTGACGATTTATGAAGAACAACCCTTTTTCTCCTGTTTTTGAACTTTAAGCGTGCAAACAGGGAAGTGTCTTCAGAATTCGGAAATATCTGAAAAACTAGGAATTTTCAAAAATTCTGTAAATCTGAAATTTTCAATTTAGGTCTGTTGTATAATCTCTAAATCTTTCAAAATGATCGGACCCTTGACAGCCAAGGTTCAGACTCTGGAAAATGGTCTAAATCAACTGAAAACACGTTTTTGTATATCTTTTTGACCGGTACTGTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTTGATTCTCAATGTTATCTT</pcr_primer_p1>
		<pcr_primer_p2>GAGTTTAGCGCTTTTTAAGTATG</pcr_primer_p2>
		<pcr_amplicon_size>576</pcr_amplicon_size>
		<canonical_amplicon>TGCTTGATTCTCAATGTTATCTTTCCGGTTAGTCTTTTTAAAATTACGGTAACAAAAGTGTCAATATGCATTTTTT</canonical_amplicon>
		<polymorphic_amplicon>TGCTTGATTCTCAATGTTATCTTTCCGGTTAGTCTTTTTAAAATTACGGTAACWAAAGTGTCAATATGCATTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6128</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>103350</contig_pos>
        <strand>+</strand>
        <context>GATACGAAAC[C/T]TATAGTGAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGTGTCACTTTTTTATCTTTACAAACCTATCAATCGCCGATACGAAAC</left_flank>
        <right_flank>TATAGTGAACGCGCACATAAATGCAGCATGGATTGGAAGACTCAAATAAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAAAACTCAAAATTTGCTGATCTTCAACTCAAGAACTATATTATTCGATATACATAGAGTTAGAGGATAGAGCTGAAAAGTTCAAGTACCGTGACCAAAACAGATGATTTTTCATTCCATAGTTTAATTCAAAAATCATTTTCTGATTTTATGAATCGGAAAATCATTGAAATGAGGTTCAGAACATTATCCTTTTAGAAAAGAATGCATTTGATTTTGGAAGACAAACGGTGTTCCAAGGGAAATGTTTAACGAACATAGCCTCAAATTCTTACCGCAAATGCCAACTGACTTTCCAGTTGGATACAAAGAAGAGTTGATATCAACCCAACGAACCATACGACAAATGTAAAAAGTCCATTGTTGTAAACTGTAGCATACAGCCTAGATTTGGAAGTAAAATGTTCAACTTCATAGATTCCAGTTCTGAAAATTCAAAGTTCGAGAAATGTGTCACTTTTTTATCTTTACAAACCTATCAATCGCCGATACGAAACTTATAGTGAACGCGCACATAAATGCAGCATGGATTGGAAGACTCAAATAACGGTATCCACTCAGCAATACCTGAAAGTTAAATATTTTTAAAAAACTGCACAAGAAGGGCCACAAGGAGCACACTGTTAAATCTCAATTATCTGAATTTCTATGCAGAGCATTGAAAATTTGCAAACTAACAAAACATTTATGCTGTTACGATAAACCATTTGTCAATTGATAACTTTTTAATATTTTTGACAGGAAAAGAGAACAGTTGGCTTAAAGTGAAAAGTCTCGTCTAATACAGGTTTTACGGTGGGGTTTTTTTTGAAAAAAAAAACCTACGTAGGCATCGAGATTGAATGAAAATATAGAAAGCATCACTGTCACACCGGCTAAGAATCCTTGCACAATATTGGCAACCTGATTATATGCTCGCTGGGCTCGGAACGCCTGGCCTGGAGCTTTTAGAATGTGAGGGATGATTGAGTCTTCCTCTTTCTTTTCTTCACGCTTCG</canonical>
            <polymorphic>TTTAAAACTCAAAATTTGCTGATCTTCAACTCAAGAACTATATTATTCGATATACATAGAGTTAGAGGATAGAGCTGAAAAGTTCAAGTACCGTGACCAAAACAGATGATTTTTCATTCCATAGTTTAATTCAAAAATCATTTTCTGATTTTATGAATCGGAAAATCATTGAAATGAGGTTCAGAACATTATCCTTTTAGAAAAGAATGCATTTGATTTTGGAAGACAAACGGTGTTCCAAGGGAAATGTTTAACGAACATAGCCTCAAATTCTTACCGCAAATGCCAACTGACTTTCCAGTTGGATACAAAGAAGAGTTGATATCAACCCAACGAACCATACGACAAATGTAAAAAGTCCATTGTTGTAAACTGTAGCATACAGCCTAGATTTGGAAGTAAAATGTTCAACTTCATAGATTCCAGTTCTGAAAATTCAAAGTTCGAGAAATGTGTCACTTTTTTATCTTTACAAACCTATCAATCGCCGATACGAAACYTATAGTGAACGCGCACATAAATGCAGCATGGATTGGAAGACTCAAATAACGGTATCCACTCAGCAATACCTGAAAGTTAAATATTTTTAAAAAACTGCACAAGAAGGGCCACAAGGAGCACACTGTTAAATCTCAATTATCTGAATTTCTATGCAGAGCATTGAAAATTTGCAAACTAACAAAACATTTATGCTGTTACGATAAACCATTTGTCAATTGATAACTTTTTAATATTTTTGACAGGAAAAGAGAACAGTTGGCTTAAAGTGAAAAGTCTCGTCTAATACAGGTTTTACGGTGGGGTTTTTTTTGAAAAAAAAAACCTACGTAGGCATCGAGATTGAATGAAAATATAGAAAGCATCACTGTCACACCGGCTAAGAATCCTTGCACAATATTGGCAACCTGATTATATGCTCGCTGGGCTCGGAACGCCTGGCCTGGAGCTTTTAGAATGTGAGGGATGATTGAGTCTTCCTCTTTCTTTTCTTCACGCTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCATACGACAAATGTAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTAACTTTCAGGTATTGCTGAGT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AACCATACGACAAATGTAAAAAGTCCATTGTTGTAAACTGTAGCATACAGCCTAGATTTGGAAGTAAAATGTTCAACTTCATAGATTCCAGTTCTGAAAATTCAAAGTTCGAGAAATGTGTCACTTTTTTATCTTTACAAACCTATCAATCGCCGATACGAAACTTATAGTGAACGCGCACATAAATGCAGCATGGATTGGAAGACTCAAATAACGGTATCCACTCAGCAATACCTGAAAGTTAA</canonical_amplicon>
		<polymorphic_amplicon>AACCATACGACAAATGTAAAAAGTCCATTGTTGTAAACTGTAGCATACAGCCTAGATTTGGAAGTAAAATGTTCAACTTCATAGATTCCAGTTCTGAAAATTCAAAGTTCGAGAAATGTGTCACTTTTTTATCTTTACAAACCTATCAATCGCCGATACGAAACYTATAGTGAACGCGCACATAAATGCAGCATGGATTGGAAGACTCAAATAACGGTATCCACTCAGCAATACCTGAAAGTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6129</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>103017</contig_pos>
        <strand></strand>
        <context>atcggaaaat[C/T]attgaaatga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCATAGTTTAATTCAAAAATCATTTTCTGATTTTATGAATCGGAAAAT</left_flank>
        <right_flank>ATTGAAATGAGGTTCAGAACATTATCCTTTTAGAAAAGAATGCATTTGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCCAAGTGCAGCAGTAACCGCTCTGAATACGCTGTAGATTCTCCAGCGGCGGACAAGAGCATCTGATGGGATTTTCGTCGGCTGAAAGAAATAATCAATAATCTCGACTTGACATCTTATGTTAGGTCATATTCATGAACATTTTCCTTGGTAAACCGGTTTCTTTCAAAAATTCAACTAAAAAGAGTGAGAAATGAAGGAAAGCCGTTTTCTCTTTGGAACATCCCTCTATTTCCAAACAGGCAGACGAATTTCACTTGATGTTTACACTAACTTTTAAGAATATTTTGATTTCAAAATAAAGTAGTATATTAAGTGCATTAATATCTAATTTAAAACTCAAAATTTGCTGATCTTCAACTCAAGAACTATATTATTCGATATACATAGAGTTAGAGGATAGAGCTGAAAAGTTCAAGTACCGTGACCAAAACAGATGATTTTTCATTCCATAGTTTAATTCAAAAATCATTTTCTGATTTTATGAATCGGAAAATCATTGAAATGAGGTTCAGAACATTATCCTTTTAGAAAAGAATGCATTTGATTTTGGAAGACAAACGGTGTTCCAAGGGAAATGTTTAACGAACATAGCCTCAAATTCTTACCGCAAATGCCAACTGACTTTCCAGTTGGATACAAAGAAGAGTTGATATCAACCCAACGAACCATACGACAAATGTAAAAAGTCCATTGTTGTAAACTGTAGCATACAGCCTAGATTTGGAAGTAAAATGTTCAACTTCATAGATTCCAGTTCTGAAAATTCAAAGTTCGAGAAATGTGTCACTTTTTTATCTTTACAAACCTATCAATCGCCGATACGAAACTTATAGTGAACGCGCACATAAATGCAGCATGGATTGGAAGACTCAAATAACGGTATCCACTCAGCAATACCTGAAAGTTAAATATTTTTAAAAAACTGCACAAGAAGGGCCACAAGGAGCACACTGTTAAATCTCAATTATCTGAATTTCTATGCAGAGCATTGAAAA</canonical>
            <polymorphic>AAGCCAAGTGCAGCAGTAACCGCTCTGAATACGCTGTAGATTCTCCAGCGGCGGACAAGAGCATCTGATGGGATTTTCGTCGGCTGAAAGAAATAATCAATAATCTCGACTTGACATCTTATGTTAGGTCATATTCATGAACATTTTCCTTGGTAAACCGGTTTCTTTCAAAAATTCAACTAAAAAGAGTGAGAAATGAAGGAAAGCCGTTTTCTCTTTGGAACATCCCTCTATTTCCAAACAGGCAGACGAATTTCACTTGATGTTTACACTAACTTTTAAGAATATTTTGATTTCAAAATAAAGTAGTATATTAAGTGCATTAATATCTAATTTAAAACTCAAAATTTGCTGATCTTCAACTCAAGAACTATATTATTCGATATACATAGAGTTAGAGGATAGAGCTGAAAAGTTCAAGTACCGTGACCAAAACAGATGATTTTTCATTCCATAGTTTAATTCAAAAATCATTTTCTGATTTTATGAATCGGAAAATYATTGAAATGAGGTTCAGAACATTATCCTTTTAGAAAAGAATGCATTTGATTTTGGAAGACAAACGGTGTTCCAAGGGAAATGTTTAACGAACATAGCCTCAAATTCTTACCGCAAATGCCAACTGACTTTCCAGTTGGATACAAAGAAGAGTTGATATCAACCCAACGAACCATACGACAAATGTAAAAAGTCCATTGTTGTAAACTGTAGCATACAGCCTAGATTTGGAAGTAAAATGTTCAACTTCATAGATTCCAGTTCTGAAAATTCAAAGTTCGAGAAATGTGTCACTTTTTTATCTTTACAAACCTATCAATCGCCGATACGAAACTTATAGTGAACGCGCACATAAATGCAGCATGGATTGGAAGACTCAAATAACGGTATCCACTCAGCAATACCTGAAAGTTAAATATTTTTAAAAAACTGCACAAGAAGGGCCACAAGGAGCACACTGTTAAATCTCAATTATCTGAATTTCTATGCAGAGCATTGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>370 347 149 134</canonical_bands>
                <polymorphic_bands>717 149 134</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATAATCTCGACTTGACATCTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTCTTCCAAAATCAAATG</pcr_primer_p2>
		<pcr_amplicon_size>466</pcr_amplicon_size>
		<canonical_amplicon>CAATAATCTCGACTTGACATCTTATGTTAGGTCATATTCATGAACATTTTCCTTGGTAAACCGGTTTCTTTCAAAAATTCAACTAAAAAGAGTGAGAAATGAAGGAAAGCCGTTTTCTCTTTGGAACATCCCTCTATTTCCAAACAGGCAGACGAATTTCACTTGATGTTTACACTAACTTTTAAGAATATTTTGATTTCAAAATAAAGTAGTATATTAAGTGCATTAATATCTAATTTAAAACTCAAAATTTGCTGATCTTCAACTCAAGAACTATATTATTCGATATACATAGAGTTAGAGGATAGAGCTGAAAAGTTCAAGTACCGTGACCAAAACAGATGATTTTTCATTCCATAGTTTAATTCAAAAATCATTTTCTGATTTTATGAATCGGAAAATCATTGAAATGAGGTTCAGAACATTATCCTTTTAGAAAAGAATGCATTTGATTTTGGAAGACAAA</canonical_amplicon>
		<polymorphic_amplicon>CAATAATCTCGACTTGACATCTTATGTTAGGTCATATTCATGAACATTTTCCTTGGTAAACCGGTTTCTTTCAAAAATTCAACTAAAAAGAGTGAGAAATGAAGGAAAGCCGTTTTCTCTTTGGAACATCCCTCTATTTCCAAACAGGCAGACGAATTTCACTTGATGTTTACACTAACTTTTAAGAATATTTTGATTTCAAAATAAAGTAGTATATTAAGTGCATTAATATCTAATTTAAAACTCAAAATTTGCTGATCTTCAACTCAAGAACTATATTATTCGATATACATAGAGTTAGAGGATAGAGCTGAAAAGTTCAAGTACCGTGACCAAAACAGATGATTTTTCATTCCATAGTTTAATTCAAAAATCATTTTCTGATTTTATGAATCGGAAAATYATTGAAATGAGGTTCAGAACATTATCCTTTTAGAAAAGAATGCATTTGATTTTGGAAGACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6130</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>102987</contig_pos>
        <strand></strand>
        <context>taattcaaaa[A/G]tcattttctg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTACCGTGACCAAAACAGATGATTTTTCATTCCATAGTTTAATTCAAAA</left_flank>
        <right_flank>TCATTTTCTGATTTTATGAATCGGAAAATCATTGAAATGAGGTTCAGAAC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGAATCGGGTTTGAATGCCAGAATTAAAAAGCCAAGTGCAGCAGTAACCGCTCTGAATACGCTGTAGATTCTCCAGCGGCGGACAAGAGCATCTGATGGGATTTTCGTCGGCTGAAAGAAATAATCAATAATCTCGACTTGACATCTTATGTTAGGTCATATTCATGAACATTTTCCTTGGTAAACCGGTTTCTTTCAAAAATTCAACTAAAAAGAGTGAGAAATGAAGGAAAGCCGTTTTCTCTTTGGAACATCCCTCTATTTCCAAACAGGCAGACGAATTTCACTTGATGTTTACACTAACTTTTAAGAATATTTTGATTTCAAAATAAAGTAGTATATTAAGTGCATTAATATCTAATTTAAAACTCAAAATTTGCTGATCTTCAACTCAAGAACTATATTATTCGATATACATAGAGTTAGAGGATAGAGCTGAAAAGTTCAAGTACCGTGACCAAAACAGATGATTTTTCATTCCATAGTTTAATTCAAAAATCATTTTCTGATTTTATGAATCGGAAAATCATTGAAATGAGGTTCAGAACATTATCCTTTTAGAAAAGAATGCATTTGATTTTGGAAGACAAACGGTGTTCCAAGGGAAATGTTTAACGAACATAGCCTCAAATTCTTACCGCAAATGCCAACTGACTTTCCAGTTGGATACAAAGAAGAGTTGATATCAACCCAACGAACCATACGACAAATGTAAAAAGTCCATTGTTGTAAACTGTAGCATACAGCCTAGATTTGGAAGTAAAATGTTCAACTTCATAGATTCCAGTTCTGAAAATTCAAAGTTCGAGAAATGTGTCACTTTTTTATCTTTACAAACCTATCAATCGCCGATACGAAACTTATAGTGAACGCGCACATAAATGCAGCATGGATTGGAAGACTCAAATAACGGTATCCACTCAGCAATACCTGAAAGTTAAATATTTTTAAAAAACTGCACAAGAAGGGCCACAAGGAGCACACTGTTAAATCTCAAT</canonical>
            <polymorphic>TCAGAATCGGGTTTGAATGCCAGAATTAAAAAGCCAAGTGCAGCAGTAACCGCTCTGAATACGCTGTAGATTCTCCAGCGGCGGACAAGAGCATCTGATGGGATTTTCGTCGGCTGAAAGAAATAATCAATAATCTCGACTTGACATCTTATGTTAGGTCATATTCATGAACATTTTCCTTGGTAAACCGGTTTCTTTCAAAAATTCAACTAAAAAGAGTGAGAAATGAAGGAAAGCCGTTTTCTCTTTGGAACATCCCTCTATTTCCAAACAGGCAGACGAATTTCACTTGATGTTTACACTAACTTTTAAGAATATTTTGATTTCAAAATAAAGTAGTATATTAAGTGCATTAATATCTAATTTAAAACTCAAAATTTGCTGATCTTCAACTCAAGAACTATATTATTCGATATACATAGAGTTAGAGGATAGAGCTGAAAAGTTCAAGTACCGTGACCAAAACAGATGATTTTTCATTCCATAGTTTAATTCAAAARTCATTTTCTGATTTTATGAATCGGAAAATCATTGAAATGAGGTTCAGAACATTATCCTTTTAGAAAAGAATGCATTTGATTTTGGAAGACAAACGGTGTTCCAAGGGAAATGTTTAACGAACATAGCCTCAAATTCTTACCGCAAATGCCAACTGACTTTCCAGTTGGATACAAAGAAGAGTTGATATCAACCCAACGAACCATACGACAAATGTAAAAAGTCCATTGTTGTAAACTGTAGCATACAGCCTAGATTTGGAAGTAAAATGTTCAACTTCATAGATTCCAGTTCTGAAAATTCAAAGTTCGAGAAATGTGTCACTTTTTTATCTTTACAAACCTATCAATCGCCGATACGAAACTTATAGTGAACGCGCACATAAATGCAGCATGGATTGGAAGACTCAAATAACGGTATCCACTCAGCAATACCTGAAAGTTAAATATTTTTAAAAAACTGCACAAGAAGGGCCACAAGGAGCACACTGTTAAATCTCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTCGACTTGACATCTTATGTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTAAAAGGATAATGTTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>435</pcr_amplicon_size>
		<canonical_amplicon>ATCTCGACTTGACATCTTATGTTAGGTCATATTCATGAACATTTTCCTTGGTAAACCGGTTTCTTTCAAAAATTCAACTAAAAAGAGTGAGAAATGAAGGAAAGCCGTTTTCTCTTTGGAACATCCCTCTATTTCCAAACAGGCAGACGAATTTCACTTGATGTTTACACTAACTTTTAAGAATATTTTGATTTCAAAATAAAGTAGTATATTAAGTGCATTAATATCTAATTTAAAACTCAAAATTTGCTGATCTTCAACTCAAGAACTATATTATTCGATATACATAGAGTTAGAGGATAGAGCTGAAAAGTTCAAGTACCGTGACCAAAACAGATGATTTTTCATTCCATAGTTTAATTCAAAAATCATTTTCTGATTTTATGAATCGGAAAATCATTGAAATGAGGTTCAGAACATTATCCTTTTAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATCTCGACTTGACATCTTATGTTAGGTCATATTCATGAACATTTTCCTTGGTAAACCGGTTTCTTTCAAAAATTCAACTAAAAAGAGTGAGAAATGAAGGAAAGCCGTTTTCTCTTTGGAACATCCCTCTATTTCCAAACAGGCAGACGAATTTCACTTGATGTTTACACTAACTTTTAAGAATATTTTGATTTCAAAATAAAGTAGTATATTAAGTGCATTAATATCTAATTTAAAACTCAAAATTTGCTGATCTTCAACTCAAGAACTATATTATTCGATATACATAGAGTTAGAGGATAGAGCTGAAAAGTTCAAGTACCGTGACCAAAACAGATGATTTTTCATTCCATAGTTTAATTCAAAARTCATTTTCTGATTTTATGAATCGGAAAATCATTGAAATGAGGTTCAGAACATTATCCTTTTAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6131</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>131419</contig_pos>
        <strand>+</strand>
        <context>CGAACTTTGT[A/G]AAAAATTAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACTTTAATGCAAGAAAAATGGAAGTGAAACTAATTTAAGCGAACTTTGT</left_flank>
        <right_flank>AAAAATTAAATTGTTAGGATTAAGTTCAGGGACTTCAGACAAGATACTGC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTCTTGGGTTTACAGGGTTTACAATAACTGGCAACATGGAAAACATTCTTTTGATTTGAAAAGCATTTTCCTATTTCTTTTATTTTGATTTTGGTGCCAGGCAGAAAACATTATTGAAAACGTCTCGACGCCCACTTTCAATAAATATAATGGATTCTGGAGGCTAAAAAAGTTTTAGGGGGGGGGGGGGGCAAAAAGTTCATACCATCGAATCCTGCAGAAAAATATGAAAAATTAGCAAAATCTTTAAAAATCGATTTTGATGCAAAAAATATCAATTTCGTTCATTTCTGGAAATTTCCAAAAAGTTCTAGATTTGTTTGAATTCCAGCCAAAGCTGAAAAGTTTCAGAAATTGGGTGAGAACTGAGATTTTTTTTGATTTTGAAGGTTTTCTAAATTTTTGTAGTTTTATTCAATTTCTGGGTTAATCTACATAGTTTTCTACAAACTTTAATGCAAGAAAAATGGAAGTGAAACTAATTTAAGCGAACTTTGTGAAAAATTAAATTGTTAGGATTAAGTTCAGGGACTTCAGACAAGATACTGCAACAAAATTATGTTGCAAAAAAATGAAAAATAACTGAAAAACAACAGTTTTACAAAATAAAAGTGTCAAGAAGATTTCTATTTTAATATAATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCCAGACTGGAAACAGTGTGAAATTTCAGATATTGTGAAATAGAGATTTTTATGTTTTGAGTAAAATTTCGAAAAGTTTTGGAAAATATCTCGGAAAAAAATATTGCAAGTGACAAATAGAATTAAAACTATTTTTTTTCCTTCTAATGATAGGGTTTTACTGAATTCTGAGAAGTATACGAGAAGATTCACGAATTTTAGTAATATTTTATGAGATTCTCTTTTTTTCATTAGATTTCATTAGACTTCATGAGATTCTAATTTTGGAATTTCTGTTTGAATTTTTTTTGCAAAAATAAAATGCTGCTGCCAAA</canonical>
            <polymorphic>GGTCTTGGGTTTACAGGGTTTACAATAACTGGCAACATGGAAAACATTCTTTTGATTTGAAAAGCATTTTCCTATTTCTTTTATTTTGATTTTGGTGCCAGGCAGAAAACATTATTGAAAACGTCTCGACGCCCACTTTCAATAAATATAATGGATTCTGGAGGCTAAAAAAGTTTTAGGGGGGGGGGGGGGCAAAAAGTTCATACCATCGAATCCTGCAGAAAAATATGAAAAATTAGCAAAATCTTTAAAAATCGATTTTGATGCAAAAAATATCAATTTCGTTCATTTCTGGAAATTTCCAAAAAGTTCTAGATTTGTTTGAATTCCAGCCAAAGCTGAAAAGTTTCAGAAATTGGGTGAGAACTGAGATTTTTTTTGATTTTGAAGGTTTTCTAAATTTTTGTAGTTTTATTCAATTTCTGGGTTAATCTACATAGTTTTCTACAAACTTTAATGCAAGAAAAATGGAAGTGAAACTAATTTAAGCGAACTTTGTRAAAAATTAAATTGTTAGGATTAAGTTCAGGGACTTCAGACAAGATACTGCAACAAAATTATGTTGCAAAAAAATGAAAAATAACTGAAAAACAACAGTTTTACAAAATAAAAGTGTCAAGAAGATTTCTATTTTAATATAATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCCAGACTGGAAACAGTGTGAAATTTCAGATATTGTGAAATAGAGATTTTTATGTTTTGAGTAAAATTTCGAAAAGTTTTGGAAAATATCTCGGAAAAAAATATTGCAAGTGACAAATAGAATTAAAACTATTTTTTTTCCTTCTAATGATAGGGTTTTACTGAATTCTGAGAAGTATACGAGAAGATTCACGAATTTTAGTAATATTTTATGAGATTCTCTTTTTTTCATTAGATTTCATTAGACTTCATGAGATTCTAATTTTGGAATTTCTGTTTGAATTTTTTTTGCAAAAATAAAATGCTGCTGCCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>227 123 115 114 97 79 75 51 38 38 24 17 2</canonical_bands>
                <polymorphic_bands>227 139 123 114 97 79 75 51 38 38 17 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTACAAACTTTAATGCAAGA</pcr_primer_p1>
		<pcr_primer_p2>GGATGCAGTTGAAAATATGAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTACAAACTTTAATGCAAGAAAAATGGAAGTGAAACTAATTTAAGCGAACTTTGTGAAAAATTAAATTGTTAGGATTAAGTTCAGGGACTTCAGACAAGATACTGCAACAAAATTATGTTGCAAAAAAATGAAAAATAACTGAAAAACAACAGTTTTACAAAATAAAAGTGTCAAGAAGATTTCTATTTTAATATAATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTACAAACTTTAATGCAAGAAAAATGGAAGTGAAACTAATTTAAGCGAACTTTGTRAAAAATTAAATTGTTAGGATTAAGTTCAGGGACTTCAGACAAGATACTGCAACAAAATTATGTTGCAAAAAAATGAAAAATAACTGAAAAACAACAGTTTTACAAAATAAAAGTGTCAAGAAGATTTCTATTTTAATATAATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6132</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>131468</contig_pos>
        <strand>+</strand>
        <context>ACAAGATACT[G/T]CAACAAAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAAAAATTAAATTGTTAGGATTAAGTTCAGGGACTTCAGACAAGATACT</left_flank>
        <right_flank>CAACAAAATTATGTTGCAAAAAAATGAAAAATAACTGAAAAACAACAGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGATTTGAAAAGCATTTTCCTATTTCTTTTATTTTGATTTTGGTGCCAGGCAGAAAACATTATTGAAAACGTCTCGACGCCCACTTTCAATAAATATAATGGATTCTGGAGGCTAAAAAAGTTTTAGGGGGGGGGGGGGGCAAAAAGTTCATACCATCGAATCCTGCAGAAAAATATGAAAAATTAGCAAAATCTTTAAAAATCGATTTTGATGCAAAAAATATCAATTTCGTTCATTTCTGGAAATTTCCAAAAAGTTCTAGATTTGTTTGAATTCCAGCCAAAGCTGAAAAGTTTCAGAAATTGGGTGAGAACTGAGATTTTTTTTGATTTTGAAGGTTTTCTAAATTTTTGTAGTTTTATTCAATTTCTGGGTTAATCTACATAGTTTTCTACAAACTTTAATGCAAGAAAAATGGAAGTGAAACTAATTTAAGCGAACTTTGTGAAAAATTAAATTGTTAGGATTAAGTTCAGGGACTTCAGACAAGATACTGCAACAAAATTATGTTGCAAAAAAATGAAAAATAACTGAAAAACAACAGTTTTACAAAATAAAAGTGTCAAGAAGATTTCTATTTTAATATAATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCCAGACTGGAAACAGTGTGAAATTTCAGATATTGTGAAATAGAGATTTTTATGTTTTGAGTAAAATTTCGAAAAGTTTTGGAAAATATCTCGGAAAAAAATATTGCAAGTGACAAATAGAATTAAAACTATTTTTTTTCCTTCTAATGATAGGGTTTTACTGAATTCTGAGAAGTATACGAGAAGATTCACGAATTTTAGTAATATTTTATGAGATTCTCTTTTTTTCATTAGATTTCATTAGACTTCATGAGATTCTAATTTTGGAATTTCTGTTTGAATTTTTTTTGCAAAAATAAAATGCTGCTGCCAAAATAAAGTGTTTGATGATTTAAAAGTTATCAAATGGGAGGTCATTTTCGA</canonical>
            <polymorphic>TTTTGATTTGAAAAGCATTTTCCTATTTCTTTTATTTTGATTTTGGTGCCAGGCAGAAAACATTATTGAAAACGTCTCGACGCCCACTTTCAATAAATATAATGGATTCTGGAGGCTAAAAAAGTTTTAGGGGGGGGGGGGGGCAAAAAGTTCATACCATCGAATCCTGCAGAAAAATATGAAAAATTAGCAAAATCTTTAAAAATCGATTTTGATGCAAAAAATATCAATTTCGTTCATTTCTGGAAATTTCCAAAAAGTTCTAGATTTGTTTGAATTCCAGCCAAAGCTGAAAAGTTTCAGAAATTGGGTGAGAACTGAGATTTTTTTTGATTTTGAAGGTTTTCTAAATTTTTGTAGTTTTATTCAATTTCTGGGTTAATCTACATAGTTTTCTACAAACTTTAATGCAAGAAAAATGGAAGTGAAACTAATTTAAGCGAACTTTGTGAAAAATTAAATTGTTAGGATTAAGTTCAGGGACTTCAGACAAGATACTKCAACAAAATTATGTTGCAAAAAAATGAAAAATAACTGAAAAACAACAGTTTTACAAAATAAAAGTGTCAAGAAGATTTCTATTTTAATATAATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCCAGACTGGAAACAGTGTGAAATTTCAGATATTGTGAAATAGAGATTTTTATGTTTTGAGTAAAATTTCGAAAAGTTTTGGAAAATATCTCGGAAAAAAATATTGCAAGTGACAAATAGAATTAAAACTATTTTTTTTCCTTCTAATGATAGGGTTTTACTGAATTCTGAGAAGTATACGAGAAGATTCACGAATTTTAGTAATATTTTATGAGATTCTCTTTTTTTCATTAGATTTCATTAGACTTCATGAGATTCTAATTTTGGAATTTCTGTTTGAATTTTTTTTGCAAAAATAAAATGCTGCTGCCAAAATAAAGTGTTTGATGATTTAAAAGTTATCAAATGGGAGGTCATTTTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>193 184 169 119 108 90 73 48 16</canonical_bands>
                <polymorphic_bands>193 184 169 119 108 106 73 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTACAAACTTTAATGCAAGA</pcr_primer_p1>
		<pcr_primer_p2>GGATGCAGTTGAAAATATGAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTACAAACTTTAATGCAAGAAAAATGGAAGTGAAACTAATTTAAGCGAACTTTGTGAAAAATTAAATTGTTAGGATTAAGTTCAGGGACTTCAGACAAGATACTGCAACAAAATTATGTTGCAAAAAAATGAAAAATAACTGAAAAACAACAGTTTTACAAAATAAAAGTGTCAAGAAGATTTCTATTTTAATATAATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTACAAACTTTAATGCAAGAAAAATGGAAGTGAAACTAATTTAAGCGAACTTTGTGAAAAATTAAATTGTTAGGATTAAGTTCAGGGACTTCAGACAAGATACTKCAACAAAATTATGTTGCAAAAAAATGAAAAATAACTGAAAAACAACAGTTTTACAAAATAAAAGTGTCAAGAAGATTTCTATTTTAATATAATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6133</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>131485</contig_pos>
        <strand>+</strand>
        <context>AATTATGTTG[C/T]AARAAAATGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGATTAAGTTCAGGGACTTCAGACAAGATACTGCAACAAAATTATGTTG</left_flank>
        <right_flank>AAAAAAATGAAAAATAACTGAAAAACAACAGTTTTACAAAATAAAAGTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCCTATTTCTTTTATTTTGATTTTGGTGCCAGGCAGAAAACATTATTGAAAACGTCTCGACGCCCACTTTCAATAAATATAATGGATTCTGGAGGCTAAAAAAGTTTTAGGGGGGGGGGGGGGCAAAAAGTTCATACCATCGAATCCTGCAGAAAAATATGAAAAATTAGCAAAATCTTTAAAAATCGATTTTGATGCAAAAAATATCAATTTCGTTCATTTCTGGAAATTTCCAAAAAGTTCTAGATTTGTTTGAATTCCAGCCAAAGCTGAAAAGTTTCAGAAATTGGGTGAGAACTGAGATTTTTTTTGATTTTGAAGGTTTTCTAAATTTTTGTAGTTTTATTCAATTTCTGGGTTAATCTACATAGTTTTCTACAAACTTTAATGCAAGAAAAATGGAAGTGAAACTAATTTAAGCGAACTTTGTGAAAAATTAAATTGTTAGGATTAAGTTCAGGGACTTCAGACAAGATACTGCAACAAAATTATGTTGCAAAAAAATGAAAAATAACTGAAAAACAACAGTTTTACAAAATAAAAGTGTCAAGAAGATTTCTATTTTAATATAATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCCAGACTGGAAACAGTGTGAAATTTCAGATATTGTGAAATAGAGATTTTTATGTTTTGAGTAAAATTTCGAAAAGTTTTGGAAAATATCTCGGAAAAAAATATTGCAAGTGACAAATAGAATTAAAACTATTTTTTTTCCTTCTAATGATAGGGTTTTACTGAATTCTGAGAAGTATACGAGAAGATTCACGAATTTTAGTAATATTTTATGAGATTCTCTTTTTTTCATTAGATTTCATTAGACTTCATGAGATTCTAATTTTGGAATTTCTGTTTGAATTTTTTTTGCAAAAATAAAATGCTGCTGCCAAAATAAAGTGTTTGATGATTTAAAAGTTATCAAATGGGAGGTCATTTTCGAAACCTCCTATCTTCTCC</canonical>
            <polymorphic>TTTTCCTATTTCTTTTATTTTGATTTTGGTGCCAGGCAGAAAACATTATTGAAAACGTCTCGACGCCCACTTTCAATAAATATAATGGATTCTGGAGGCTAAAAAAGTTTTAGGGGGGGGGGGGGGCAAAAAGTTCATACCATCGAATCCTGCAGAAAAATATGAAAAATTAGCAAAATCTTTAAAAATCGATTTTGATGCAAAAAATATCAATTTCGTTCATTTCTGGAAATTTCCAAAAAGTTCTAGATTTGTTTGAATTCCAGCCAAAGCTGAAAAGTTTCAGAAATTGGGTGAGAACTGAGATTTTTTTTGATTTTGAAGGTTTTCTAAATTTTTGTAGTTTTATTCAATTTCTGGGTTAATCTACATAGTTTTCTACAAACTTTAATGCAAGAAAAATGGAAGTGAAACTAATTTAAGCGAACTTTGTGAAAAATTAAATTGTTAGGATTAAGTTCAGGGACTTCAGACAAGATACTGCAACAAAATTATGTTGYAAAAAAATGAAAAATAACTGAAAAACAACAGTTTTACAAAATAAAAGTGTCAAGAAGATTTCTATTTTAATATAATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCCAGACTGGAAACAGTGTGAAATTTCAGATATTGTGAAATAGAGATTTTTATGTTTTGAGTAAAATTTCGAAAAGTTTTGGAAAATATCTCGGAAAAAAATATTGCAAGTGACAAATAGAATTAAAACTATTTTTTTTCCTTCTAATGATAGGGTTTTACTGAATTCTGAGAAGTATACGAGAAGATTCACGAATTTTAGTAATATTTTATGAGATTCTCTTTTTTTCATTAGATTTCATTAGACTTCATGAGATTCTAATTTTGGAATTTCTGTTTGAATTTTTTTTGCAAAAATAAAATGCTGCTGCCAAAATAAAGTGTTTGATGATTTAAAAGTTATCAAATGGGAGGTCATTTTCGAAACCTCCTATCTTCTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>193 184 152 119 108 90 90 48 16</canonical_bands>
                <polymorphic_bands>193 184 152 135 108 90 90 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTACAAACTTTAATGCAAGA</pcr_primer_p1>
		<pcr_primer_p2>GGATGCAGTTGAAAATATGAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTACAAACTTTAATGCAAGAAAAATGGAAGTGAAACTAATTTAAGCGAACTTTGTGAAAAATTAAATTGTTAGGATTAAGTTCAGGGACTTCAGACAAGATACTGCAACAAAATTATGTTGCAAAAAAATGAAAAATAACTGAAAAACAACAGTTTTACAAAATAAAAGTGTCAAGAAGATTTCTATTTTAATATAATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTACAAACTTTAATGCAAGAAAAATGGAAGTGAAACTAATTTAAGCGAACTTTGTGAAAAATTAAATTGTTAGGATTAAGTTCAGGGACTTCAGACAAGATACTGCAACAAAATTATGTTGYAAAAAAATGAAAAATAACTGAAAAACAACAGTTTTACAAAATAAAAGTGTCAAGAAGATTTCTATTTTAATATAATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6134</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>131513</contig_pos>
        <strand></strand>
        <context>CTGAAAAACA[A/G]CAGTTTTAYA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATACTGCAACAAAATTATGTTGCAAAAAAATGAAAAATAACTGAAAAACA</left_flank>
        <right_flank>CAGTTTTACAAAATAAAAGTGTCAAGAAGATTTCTATTTTAATATAATTG</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGCCAGGCAGAAAACATTATTGAAAACGTCTCGACGCCCACTTTCAATAAATATAATGGATTCTGGAGGCTAAAAAAGTTTTAGGGGGGGGGGGGGGCAAAAAGTTCATACCATCGAATCCTGCAGAAAAATATGAAAAATTAGCAAAATCTTTAAAAATCGATTTTGATGCAAAAAATATCAATTTCGTTCATTTCTGGAAATTTCCAAAAAGTTCTAGATTTGTTTGAATTCCAGCCAAAGCTGAAAAGTTTCAGAAATTGGGTGAGAACTGAGATTTTTTTTGATTTTGAAGGTTTTCTAAATTTTTGTAGTTTTATTCAATTTCTGGGTTAATCTACATAGTTTTCTACAAACTTTAATGCAAGAAAAATGGAAGTGAAACTAATTTAAGCGAACTTTGTGAAAAATTAAATTGTTAGGATTAAGTTCAGGGACTTCAGACAAGATACTGCAACAAAATTATGTTGCAAAAAAATGAAAAATAACTGAAAAACAACAGTTTTACAAAATAAAAGTGTCAAGAAGATTTCTATTTTAATATAATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCCAGACTGGAAACAGTGTGAAATTTCAGATATTGTGAAATAGAGATTTTTATGTTTTGAGTAAAATTTCGAAAAGTTTTGGAAAATATCTCGGAAAAAAATATTGCAAGTGACAAATAGAATTAAAACTATTTTTTTTCCTTCTAATGATAGGGTTTTACTGAATTCTGAGAAGTATACGAGAAGATTCACGAATTTTAGTAATATTTTATGAGATTCTCTTTTTTTCATTAGATTTCATTAGACTTCATGAGATTCTAATTTTGGAATTTCTGTTTGAATTTTTTTTGCAAAAATAAAATGCTGCTGCCAAAATAAAGTGTTTGATGATTTAAAAGTTATCAAATGGGAGGTCATTTTCGAAACCTCCTATCTTCTCCCGCCATTCCACACTGAATTTTTATTGAC</canonical>
            <polymorphic>GTGCCAGGCAGAAAACATTATTGAAAACGTCTCGACGCCCACTTTCAATAAATATAATGGATTCTGGAGGCTAAAAAAGTTTTAGGGGGGGGGGGGGGCAAAAAGTTCATACCATCGAATCCTGCAGAAAAATATGAAAAATTAGCAAAATCTTTAAAAATCGATTTTGATGCAAAAAATATCAATTTCGTTCATTTCTGGAAATTTCCAAAAAGTTCTAGATTTGTTTGAATTCCAGCCAAAGCTGAAAAGTTTCAGAAATTGGGTGAGAACTGAGATTTTTTTTGATTTTGAAGGTTTTCTAAATTTTTGTAGTTTTATTCAATTTCTGGGTTAATCTACATAGTTTTCTACAAACTTTAATGCAAGAAAAATGGAAGTGAAACTAATTTAAGCGAACTTTGTGAAAAATTAAATTGTTAGGATTAAGTTCAGGGACTTCAGACAAGATACTGCAACAAAATTATGTTGCAAAAAAATGAAAAATAACTGAAAAACARCAGTTTTACAAAATAAAAGTGTCAAGAAGATTTCTATTTTAATATAATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCCAGACTGGAAACAGTGTGAAATTTCAGATATTGTGAAATAGAGATTTTTATGTTTTGAGTAAAATTTCGAAAAGTTTTGGAAAATATCTCGGAAAAAAATATTGCAAGTGACAAATAGAATTAAAACTATTTTTTTTCCTTCTAATGATAGGGTTTTACTGAATTCTGAGAAGTATACGAGAAGATTCACGAATTTTAGTAATATTTTATGAGATTCTCTTTTTTTCATTAGATTTCATTAGACTTCATGAGATTCTAATTTTGGAATTTCTGTTTGAATTTTTTTTGCAAAAATAAAATGCTGCTGCCAAAATAAAGTGTTTGATGATTTAAAAGTTATCAAATGGGAGGTCATTTTCGAAACCTCCTATCTTCTCCCGCCATTCCACACTGAATTTTTATTGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>502 393 105</canonical_bands>
                <polymorphic_bands>607 393</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTAAGTTCAGGGACTTCAGAC</pcr_primer_p1>
		<pcr_primer_p2>AAAACTTTTCGAAATTTTACTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATTAAGTTCAGGGACTTCAGACAAGATACTGCAACAAAATTATGTTGCAAAAAAATGAAAAATAACTGAAAAACAACAGTTTTACAAAATAAAAGTGTCAAGAAGATTTCTATTTTAATATAATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCCAGACTGGAAACAGTGTGAAATTTCAGATATTGTGAAATAGAGATTTTTATGTTTTGAGTAAAATTTCGAAAAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>GATTAAGTTCAGGGACTTCAGACAAGATACTGCAACAAAATTATGTTGCAAAAAAATGAAAAATAACTGAAAAACARCAGTTTTACAAAATAAAAGTGTCAAGAAGATTTCTATTTTAATATAATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCCAGACTGGAAACAGTGTGAAATTTCAGATATTGTGAAATAGAGATTTTTATGTTTTGAGTAAAATTTCGAAAAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6135</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>131522</contig_pos>
        <strand></strand>
        <context>ARCAGTTTTA[C/T]AAAATAAAYG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAAATTATGTTGCAAAAAAATGAAAAATAACTGAAAAACAACAGTTTTA</left_flank>
        <right_flank>AAAATAAAAGTGTCAAGAAGATTTCTATTTTAATATAATTGAGAAATTCA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAAACATTATTGAAAACGTCTCGACGCCCACTTTCAATAAATATAATGGATTCTGGAGGCTAAAAAAGTTTTAGGGGGGGGGGGGGGCAAAAAGTTCATACCATCGAATCCTGCAGAAAAATATGAAAAATTAGCAAAATCTTTAAAAATCGATTTTGATGCAAAAAATATCAATTTCGTTCATTTCTGGAAATTTCCAAAAAGTTCTAGATTTGTTTGAATTCCAGCCAAAGCTGAAAAGTTTCAGAAATTGGGTGAGAACTGAGATTTTTTTTGATTTTGAAGGTTTTCTAAATTTTTGTAGTTTTATTCAATTTCTGGGTTAATCTACATAGTTTTCTACAAACTTTAATGCAAGAAAAATGGAAGTGAAACTAATTTAAGCGAACTTTGTGAAAAATTAAATTGTTAGGATTAAGTTCAGGGACTTCAGACAAGATACTGCAACAAAATTATGTTGCAAAAAAATGAAAAATAACTGAAAAACAACAGTTTTACAAAATAAAAGTGTCAAGAAGATTTCTATTTTAATATAATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCCAGACTGGAAACAGTGTGAAATTTCAGATATTGTGAAATAGAGATTTTTATGTTTTGAGTAAAATTTCGAAAAGTTTTGGAAAATATCTCGGAAAAAAATATTGCAAGTGACAAATAGAATTAAAACTATTTTTTTTCCTTCTAATGATAGGGTTTTACTGAATTCTGAGAAGTATACGAGAAGATTCACGAATTTTAGTAATATTTTATGAGATTCTCTTTTTTTCATTAGATTTCATTAGACTTCATGAGATTCTAATTTTGGAATTTCTGTTTGAATTTTTTTTGCAAAAATAAAATGCTGCTGCCAAAATAAAGTGTTTGATGATTTAAAAGTTATCAAATGGGAGGTCATTTTCGAAACCTCCTATCTTCTCCCGCCATTCCACACTGAATTTTTATTGACTTTGAACAA</canonical>
            <polymorphic>AGAAAACATTATTGAAAACGTCTCGACGCCCACTTTCAATAAATATAATGGATTCTGGAGGCTAAAAAAGTTTTAGGGGGGGGGGGGGGCAAAAAGTTCATACCATCGAATCCTGCAGAAAAATATGAAAAATTAGCAAAATCTTTAAAAATCGATTTTGATGCAAAAAATATCAATTTCGTTCATTTCTGGAAATTTCCAAAAAGTTCTAGATTTGTTTGAATTCCAGCCAAAGCTGAAAAGTTTCAGAAATTGGGTGAGAACTGAGATTTTTTTTGATTTTGAAGGTTTTCTAAATTTTTGTAGTTTTATTCAATTTCTGGGTTAATCTACATAGTTTTCTACAAACTTTAATGCAAGAAAAATGGAAGTGAAACTAATTTAAGCGAACTTTGTGAAAAATTAAATTGTTAGGATTAAGTTCAGGGACTTCAGACAAGATACTGCAACAAAATTATGTTGCAAAAAAATGAAAAATAACTGAAAAACAACAGTTTTAYAAAATAAAAGTGTCAAGAAGATTTCTATTTTAATATAATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCCAGACTGGAAACAGTGTGAAATTTCAGATATTGTGAAATAGAGATTTTTATGTTTTGAGTAAAATTTCGAAAAGTTTTGGAAAATATCTCGGAAAAAAATATTGCAAGTGACAAATAGAATTAAAACTATTTTTTTTCCTTCTAATGATAGGGTTTTACTGAATTCTGAGAAGTATACGAGAAGATTCACGAATTTTAGTAATATTTTATGAGATTCTCTTTTTTTCATTAGATTTCATTAGACTTCATGAGATTCTAATTTTGGAATTTCTGTTTGAATTTTTTTTGCAAAAATAAAATGCTGCTGCCAAAATAAAGTGTTTGATGATTTAAAAGTTATCAAATGGGAGGTCATTTTCGAAACCTCCTATCTTCTCCCGCCATTCCACACTGAATTTTTATTGACTTTGAACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTAAGTTCAGGGACTTCAGAC</pcr_primer_p1>
		<pcr_primer_p2>AAAACTTTTCGAAATTTTACTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATTAAGTTCAGGGACTTCAGACAAGATACTGCAACAAAATTATGTTGCAAAAAAATGAAAAATAACTGAAAAACAACAGTTTTACAAAATAAAAGTGTCAAGAAGATTTCTATTTTAATATAATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCCAGACTGGAAACAGTGTGAAATTTCAGATATTGTGAAATAGAGATTTTTATGTTTTGAGTAAAATTTCGAAAAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>GATTAAGTTCAGGGACTTCAGACAAGATACTGCAACAAAATTATGTTGCAAAAAAATGAAAAATAACTGAAAAACAACAGTTTTAYAAAATAAAAGTGTCAAGAAGATTTCTATTTTAATATAATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCCAGACTGGAAACAGTGTGAAATTTCAGATATTGTGAAATAGAGATTTTTATGTTTTGAGTAAAATTTCGAAAAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6136</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>131559</contig_pos>
        <strand>+</strand>
        <context>ATTTTAATAT[A/T]ATTGAGAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACAACAGTTTTACAAAATAAAAGTGTCAAGAAGATTTCTATTTTAATAT</left_flank>
        <right_flank>ATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAAATATAATGGATTCTGGAGGCTAAAAAAGTTTTAGGGGGGGGGGGGGGCAAAAAGTTCATACCATCGAATCCTGCAGAAAAATATGAAAAATTAGCAAAATCTTTAAAAATCGATTTTGATGCAAAAAATATCAATTTCGTTCATTTCTGGAAATTTCCAAAAAGTTCTAGATTTGTTTGAATTCCAGCCAAAGCTGAAAAGTTTCAGAAATTGGGTGAGAACTGAGATTTTTTTTGATTTTGAAGGTTTTCTAAATTTTTGTAGTTTTATTCAATTTCTGGGTTAATCTACATAGTTTTCTACAAACTTTAATGCAAGAAAAATGGAAGTGAAACTAATTTAAGCGAACTTTGTGAAAAATTAAATTGTTAGGATTAAGTTCAGGGACTTCAGACAAGATACTGCAACAAAATTATGTTGCAAAAAAATGAAAAATAACTGAAAAACAACAGTTTTACAAAATAAAAGTGTCAAGAAGATTTCTATTTTAATATAATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCCAGACTGGAAACAGTGTGAAATTTCAGATATTGTGAAATAGAGATTTTTATGTTTTGAGTAAAATTTCGAAAAGTTTTGGAAAATATCTCGGAAAAAAATATTGCAAGTGACAAATAGAATTAAAACTATTTTTTTTCCTTCTAATGATAGGGTTTTACTGAATTCTGAGAAGTATACGAGAAGATTCACGAATTTTAGTAATATTTTATGAGATTCTCTTTTTTTCATTAGATTTCATTAGACTTCATGAGATTCTAATTTTGGAATTTCTGTTTGAATTTTTTTTGCAAAAATAAAATGCTGCTGCCAAAATAAAGTGTTTGATGATTTAAAAGTTATCAAATGGGAGGTCATTTTCGAAACCTCCTATCTTCTCCCGCCATTCCACACTGAATTTTTATTGACTTTGAACAAATACTGATCAACTGATGATGATGATGATCGACTGTTA</canonical>
            <polymorphic>AATAAATATAATGGATTCTGGAGGCTAAAAAAGTTTTAGGGGGGGGGGGGGGCAAAAAGTTCATACCATCGAATCCTGCAGAAAAATATGAAAAATTAGCAAAATCTTTAAAAATCGATTTTGATGCAAAAAATATCAATTTCGTTCATTTCTGGAAATTTCCAAAAAGTTCTAGATTTGTTTGAATTCCAGCCAAAGCTGAAAAGTTTCAGAAATTGGGTGAGAACTGAGATTTTTTTTGATTTTGAAGGTTTTCTAAATTTTTGTAGTTTTATTCAATTTCTGGGTTAATCTACATAGTTTTCTACAAACTTTAATGCAAGAAAAATGGAAGTGAAACTAATTTAAGCGAACTTTGTGAAAAATTAAATTGTTAGGATTAAGTTCAGGGACTTCAGACAAGATACTGCAACAAAATTATGTTGCAAAAAAATGAAAAATAACTGAAAAACAACAGTTTTACAAAATAAAAGTGTCAAGAAGATTTCTATTTTAATATWATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCCAGACTGGAAACAGTGTGAAATTTCAGATATTGTGAAATAGAGATTTTTATGTTTTGAGTAAAATTTCGAAAAGTTTTGGAAAATATCTCGGAAAAAAATATTGCAAGTGACAAATAGAATTAAAACTATTTTTTTTCCTTCTAATGATAGGGTTTTACTGAATTCTGAGAAGTATACGAGAAGATTCACGAATTTTAGTAATATTTTATGAGATTCTCTTTTTTTCATTAGATTTCATTAGACTTCATGAGATTCTAATTTTGGAATTTCTGTTTGAATTTTTTTTGCAAAAATAAAATGCTGCTGCCAAAATAAAGTGTTTGATGATTTAAAAGTTATCAAATGGGAGGTCATTTTCGAAACCTCCTATCTTCTCCCGCCATTCCACACTGAATTTTTATTGACTTTGAACAAATACTGATCAACTGATGATGATGATGATCGACTGTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>116 93 84 66 64 59 56 47 45 44 43 43 41 30 29 28 22 19 19 19 12 8 8 5</canonical_bands>
                <polymorphic_bands>116 93 92 66 64 59 56 47 45 44 43 43 41 30 29 28 22 19 19 19 12 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTAAGTTCAGGGACTTCAGAC</pcr_primer_p1>
		<pcr_primer_p2>AAAACTTTTCGAAATTTTACTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATTAAGTTCAGGGACTTCAGACAAGATACTGCAACAAAATTATGTTGCAAAAAAATGAAAAATAACTGAAAAACAACAGTTTTACAAAATAAAAGTGTCAAGAAGATTTCTATTTTAATATAATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCCAGACTGGAAACAGTGTGAAATTTCAGATATTGTGAAATAGAGATTTTTATGTTTTGAGTAAAATTTCGAAAAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>GATTAAGTTCAGGGACTTCAGACAAGATACTGCAACAAAATTATGTTGCAAAAAAATGAAAAATAACTGAAAAACAACAGTTTTACAAAATAAAAGTGTCAAGAAGATTTCTATTTTAATATWATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCCAGACTGGAAACAGTGTGAAATTTCAGATATTGTGAAATAGAGATTTTTATGTTTTGAGTAAAATTTCGAAAAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6137</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>147160</contig_pos>
        <strand>+</strand>
        <context>CTATTAGCTA[A/C]TAAAAAAAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATGGAAAATTAAAAAAATGAGATTTTGAAATAATTCTTACTATTAGCTA</left_flank>
        <right_flank>TAAAAAAAGTAGTAAAGTCACAATTCCAACTAACAAGCAGCCTACCAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGAGATAATTGAGCTCGAATAAAATTTTTGGCTGGGAGGAAGTACGGTTCTTCTTACAATGAAAAATGCTCCGTCTGTCTGGGACTTACTTAAACATTTCAAGGGGACATTAGGATTTCTATTGTGGTGTGCGGTATGTAATCATGAACTACAGAGCTGTTAAAATATTTGTTATTCTTGGCTTTCTGAAAGATAGAAAATCTATAGCATCGAAAATAAAAATTTAAAAAAAAGTATACTCAAATTTAATGAAACTGCACAAGCCATATTCCGGGGAAACTCGTTAGCTGCGAAAAATTTGTTTAATCTAAATTCGGACGTTTTTACAAGGTTTCTCAGTTTTTAAAAAATTTTGATTTCACAAAATACTTGAAAACGTTTTTTCTCTGCTAGCCAAACCGCTATAAAAAAAGAAATTTTAAATGAAAATTGGGTATATATGACGAAAAATGGAAAATTAAAAAAATGAGATTTTGAAATAATTCTTACTATTAGCTAATAAAAAAAGTAGTAAAGTCACAATTCCAACTAACAAGCAGCCTACCAAAATAGTGTTAATCACTCAATTTATTATCTAACTCTGCAAGCAAGACTCTTAATTCTAGTCCTGATAACCCTAACCAATATATTACGACCTGATAAAAATAAGATAAGAAAACGAACGAGCTGTGGGGTAAAACTAGTATTATAAGGATTCTTTTTCCTGTCTAGAAGGCTATTTTTGCTTCTTTCTCCATTTTGTATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACAATATGAAAAGCAAAAATGCTGGTTCAAATTTCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCAAAAAGAGGATAGTTTCCTTTGGCGTCCCAGAAATTTTACTACATTTGGTCACGAAATCGCTTTGGTGAGAGAAAGAAAAAAGACGAGAAAAGATCTAAACATGGGGAGGGCATGGATCGTAAAACTGTTCGCTTTCGG</canonical>
            <polymorphic>TCGAGATAATTGAGCTCGAATAAAATTTTTGGCTGGGAGGAAGTACGGTTCTTCTTACAATGAAAAATGCTCCGTCTGTCTGGGACTTACTTAAACATTTCAAGGGGACATTAGGATTTCTATTGTGGTGTGCGGTATGTAATCATGAACTACAGAGCTGTTAAAATATTTGTTATTCTTGGCTTTCTGAAAGATAGAAAATCTATAGCATCGAAAATAAAAATTTAAAAAAAAGTATACTCAAATTTAATGAAACTGCACAAGCCATATTCCGGGGAAACTCGTTAGCTGCGAAAAATTTGTTTAATCTAAATTCGGACGTTTTTACAAGGTTTCTCAGTTTTTAAAAAATTTTGATTTCACAAAATACTTGAAAACGTTTTTTCTCTGCTAGCCAAACCGCTATAAAAAAAGAAATTTTAAATGAAAATTGGGTATATATGACGAAAAATGGAAAATTAAAAAAATGAGATTTTGAAATAATTCTTACTATTAGCTAMTAAAAAAAGTAGTAAAGTCACAATTCCAACTAACAAGCAGCCTACCAAAATAGTGTTAATCACTCAATTTATTATCTAACTCTGCAAGCAAGACTCTTAATTCTAGTCCTGATAACCCTAACCAATATATTACGACCTGATAAAAATAAGATAAGAAAACGAACGAGCTGTGGGGTAAAACTAGTATTATAAGGATTCTTTTTCCTGTCTAGAAGGCTATTTTTGCTTCTTTCTCCATTTTGTATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACAATATGAAAAGCAAAAATGCTGGTTCAAATTTCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCAAAAAGAGGATAGTTTCCTTTGGCGTCCCAGAAATTTTACTACATTTGGTCACGAAATCGCTTTGGTGAGAGAAAGAAAAAAGACGAGAAAAGATCTAAACATGGGGAGGGCATGGATCGTAAAACTGTTCGCTTTCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGATTTCACAAAATACTTGA</pcr_primer_p1>
		<pcr_primer_p2>AGTCTTGCTTGCAGAGTTAGATA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTTTGATTTCACAAAATACTTGAAAACGTTTTTTCTCTGCTAGCCAAACCGCTATAAAAAAAGAAATTTTAAATGAAAATTGGGTATATATGACGAAAAATGGAAAATTAAAAAAATGAGATTTTGAAATAATTCTTACTATTAGCTAATAAAAAAAGTAGTAAAGTCACAATTCCAACTAACAAGCAGCCTACCAAAATAGTGTTAATCACTCAATTTATTATCTAACTCTGCAAGCAAGACT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGATTTCACAAAATACTTGAAAACGTTTTTTCTCTGCTAGCCAAACCGCTATAAAAAAAGAAATTTTAAATGAAAATTGGGTATATATGACGAAAAATGGAAAATTAAAAAAATGAGATTTTGAAATAATTCTTACTATTAGCTAMTAAAAAAAGTAGTAAAGTCACAATTCCAACTAACAAGCAGCCTACCAAAATAGTGTTAATCACTCAATTTATTATCTAACTCTGCAAGCAAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6138</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>147197</contig_pos>
        <strand>+</strand>
        <context>CAACTAACAA[A/G]CAGCCTACCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTACTATTAGCTAATAAAAAAAGTAGTAAAGTCACAATTCCAACTAACAA</left_flank>
        <right_flank>CAGCCTACCAAAATAGTGTTAATCACTCAATTTATTATCTAACTCTGCAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAAGTACGGTTCTTCTTACAATGAAAAATGCTCCGTCTGTCTGGGACTTACTTAAACATTTCAAGGGGACATTAGGATTTCTATTGTGGTGTGCGGTATGTAATCATGAACTACAGAGCTGTTAAAATATTTGTTATTCTTGGCTTTCTGAAAGATAGAAAATCTATAGCATCGAAAATAAAAATTTAAAAAAAAGTATACTCAAATTTAATGAAACTGCACAAGCCATATTCCGGGGAAACTCGTTAGCTGCGAAAAATTTGTTTAATCTAAATTCGGACGTTTTTACAAGGTTTCTCAGTTTTTAAAAAATTTTGATTTCACAAAATACTTGAAAACGTTTTTTCTCTGCTAGCCAAACCGCTATAAAAAAAGAAATTTTAAATGAAAATTGGGTATATATGACGAAAAATGGAAAATTAAAAAAATGAGATTTTGAAATAATTCTTACTATTAGCTAATAAAAAAAGTAGTAAAGTCACAATTCCAACTAACAAGCAGCCTACCAAAATAGTGTTAATCACTCAATTTATTATCTAACTCTGCAAGCAAGACTCTTAATTCTAGTCCTGATAACCCTAACCAATATATTACGACCTGATAAAAATAAGATAAGAAAACGAACGAGCTGTGGGGTAAAACTAGTATTATAAGGATTCTTTTTCCTGTCTAGAAGGCTATTTTTGCTTCTTTCTCCATTTTGTATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACAATATGAAAAGCAAAAATGCTGGTTCAAATTTCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCAAAAAGAGGATAGTTTCCTTTGGCGTCCCAGAAATTTTACTACATTTGGTCACGAAATCGCTTTGGTGAGAGAAAGAAAAAAGACGAGAAAAGATCTAAACATGGGGAGGGCATGGATCGTAAAACTGTTCGCTTTCGGTGAAGAACTCTTTTCTCGCACACAATGATGACGTAAC</canonical>
            <polymorphic>AGGAAGTACGGTTCTTCTTACAATGAAAAATGCTCCGTCTGTCTGGGACTTACTTAAACATTTCAAGGGGACATTAGGATTTCTATTGTGGTGTGCGGTATGTAATCATGAACTACAGAGCTGTTAAAATATTTGTTATTCTTGGCTTTCTGAAAGATAGAAAATCTATAGCATCGAAAATAAAAATTTAAAAAAAAGTATACTCAAATTTAATGAAACTGCACAAGCCATATTCCGGGGAAACTCGTTAGCTGCGAAAAATTTGTTTAATCTAAATTCGGACGTTTTTACAAGGTTTCTCAGTTTTTAAAAAATTTTGATTTCACAAAATACTTGAAAACGTTTTTTCTCTGCTAGCCAAACCGCTATAAAAAAAGAAATTTTAAATGAAAATTGGGTATATATGACGAAAAATGGAAAATTAAAAAAATGAGATTTTGAAATAATTCTTACTATTAGCTAATAAAAAAAGTAGTAAAGTCACAATTCCAACTAACAARCAGCCTACCAAAATAGTGTTAATCACTCAATTTATTATCTAACTCTGCAAGCAAGACTCTTAATTCTAGTCCTGATAACCCTAACCAATATATTACGACCTGATAAAAATAAGATAAGAAAACGAACGAGCTGTGGGGTAAAACTAGTATTATAAGGATTCTTTTTCCTGTCTAGAAGGCTATTTTTGCTTCTTTCTCCATTTTGTATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACAATATGAAAAGCAAAAATGCTGGTTCAAATTTCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCAAAAAGAGGATAGTTTCCTTTGGCGTCCCAGAAATTTTACTACATTTGGTCACGAAATCGCTTTGGTGAGAGAAAGAAAAAAGACGAGAAAAGATCTAAACATGGGGAGGGCATGGATCGTAAAACTGTTCGCTTTCGGTGAAGAACTCTTTTCTCGCACACAATGATGACGTAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>497 254 249</canonical_bands>
                <polymorphic_bands>746 254</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>500 251 249</canonical_bands>
                <polymorphic_bands>749 251</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGATTTCACAAAATACTTGA</pcr_primer_p1>
		<pcr_primer_p2>AGTCTTGCTTGCAGAGTTAGATA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTTTGATTTCACAAAATACTTGAAAACGTTTTTTCTCTGCTAGCCAAACCGCTATAAAAAAAGAAATTTTAAATGAAAATTGGGTATATATGACGAAAAATGGAAAATTAAAAAAATGAGATTTTGAAATAATTCTTACTATTAGCTAATAAAAAAAGTAGTAAAGTCACAATTCCAACTAACAAGCAGCCTACCAAAATAGTGTTAATCACTCAATTTATTATCTAACTCTGCAAGCAAGACT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGATTTCACAAAATACTTGAAAACGTTTTTTCTCTGCTAGCCAAACCGCTATAAAAAAAGAAATTTTAAATGAAAATTGGGTATATATGACGAAAAATGGAAAATTAAAAAAATGAGATTTTGAAATAATTCTTACTATTAGCTAATAAAAAAAGTAGTAAAGTCACAATTCCAACTAACAARCAGCCTACCAAAATAGTGTTAATCACTCAATTTATTATCTAACTCTGCAAGCAAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6139</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>147333</contig_pos>
        <strand>+</strand>
        <context>ACGAGCTGTG[C/G]GGTAAAACTA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAATATATTACGACCTGATAAAAATAAGATAAGAAAACGAACGAGCTGTG</left_flank>
        <right_flank>GGTAAAACTAGTATTATAAGGATTCTTTTTCCTGTCTAGAAGGCTATTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTCTTGGCTTTCTGAAAGATAGAAAATCTATAGCATCGAAAATAAAAATTTAAAAAAAAGTATACTCAAATTTAATGAAACTGCACAAGCCATATTCCGGGGAAACTCGTTAGCTGCGAAAAATTTGTTTAATCTAAATTCGGACGTTTTTACAAGGTTTCTCAGTTTTTAAAAAATTTTGATTTCACAAAATACTTGAAAACGTTTTTTCTCTGCTAGCCAAACCGCTATAAAAAAAGAAATTTTAAATGAAAATTGGGTATATATGACGAAAAATGGAAAATTAAAAAAATGAGATTTTGAAATAATTCTTACTATTAGCTAATAAAAAAAGTAGTAAAGTCACAATTCCAACTAACAAGCAGCCTACCAAAATAGTGTTAATCACTCAATTTATTATCTAACTCTGCAAGCAAGACTCTTAATTCTAGTCCTGATAACCCTAACCAATATATTACGACCTGATAAAAATAAGATAAGAAAACGAACGAGCTGTGGGGTAAAACTAGTATTATAAGGATTCTTTTTCCTGTCTAGAAGGCTATTTTTGCTTCTTTCTCCATTTTGTATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACAATATGAAAAGCAAAAATGCTGGTTCAAATTTCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCAAAAAGAGGATAGTTTCCTTTGGCGTCCCAGAAATTTTACTACATTTGGTCACGAAATCGCTTTGGTGAGAGAAAGAAAAAAGACGAGAAAAGATCTAAACATGGGGAGGGCATGGATCGTAAAACTGTTCGCTTTCGGTGAAGAACTCTTTTCTCGCACACAATGATGACGTAACTCCGGAGAGGTTGGCTGTTTGATGGTAGCCGTTGGTGTGAGTGGCGGTGTGGTGCATAGAAATGCGATACACATCAAGGAGTCCTATCGGTTTTTGCCCATCTTTGTTTTTGAGGCAGTTCCAATATCTGATCATG</canonical>
            <polymorphic>TATTCTTGGCTTTCTGAAAGATAGAAAATCTATAGCATCGAAAATAAAAATTTAAAAAAAAGTATACTCAAATTTAATGAAACTGCACAAGCCATATTCCGGGGAAACTCGTTAGCTGCGAAAAATTTGTTTAATCTAAATTCGGACGTTTTTACAAGGTTTCTCAGTTTTTAAAAAATTTTGATTTCACAAAATACTTGAAAACGTTTTTTCTCTGCTAGCCAAACCGCTATAAAAAAAGAAATTTTAAATGAAAATTGGGTATATATGACGAAAAATGGAAAATTAAAAAAATGAGATTTTGAAATAATTCTTACTATTAGCTAATAAAAAAAGTAGTAAAGTCACAATTCCAACTAACAAGCAGCCTACCAAAATAGTGTTAATCACTCAATTTATTATCTAACTCTGCAAGCAAGACTCTTAATTCTAGTCCTGATAACCCTAACCAATATATTACGACCTGATAAAAATAAGATAAGAAAACGAACGAGCTGTGSGGTAAAACTAGTATTATAAGGATTCTTTTTCCTGTCTAGAAGGCTATTTTTGCTTCTTTCTCCATTTTGTATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACAATATGAAAAGCAAAAATGCTGGTTCAAATTTCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCAAAAAGAGGATAGTTTCCTTTGGCGTCCCAGAAATTTTACTACATTTGGTCACGAAATCGCTTTGGTGAGAGAAAGAAAAAAGACGAGAAAAGATCTAAACATGGGGAGGGCATGGATCGTAAAACTGTTCGCTTTCGGTGAAGAACTCTTTTCTCGCACACAATGATGACGTAACTCCGGAGAGGTTGGCTGTTTGATGGTAGCCGTTGGTGTGAGTGGCGGTGTGGTGCATAGAAATGCGATACACATCAAGGAGTCCTATCGGTTTTTGCCCATCTTTGTTTTTGAGGCAGTTCCAATATCTGATCATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCTAACCAATATATTACGACCT</pcr_primer_p1>
		<pcr_primer_p2>TGAATTTTATGACTGCAGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCCTAACCAATATATTACGACCTGATAAAAATAAGATAAGAAAACGAACGAGCTGTGGGGTAAAACTAGTATTATAAGGATTCTTTTTCCTGTCTAGAAGGCTATTTTTGCTTCTTTCTCCATTTTGTATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACAATATGAAAAGCAAAAATGCTGGTTCAAATTTCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCA</canonical_amplicon>
		<polymorphic_amplicon>CCCTAACCAATATATTACGACCTGATAAAAATAAGATAAGAAAACGAACGAGCTGTGSGGTAAAACTAGTATTATAAGGATTCTTTTTCCTGTCTAGAAGGCTATTTTTGCTTCTTTCTCCATTTTGTATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACAATATGAAAAGCAAAAATGCTGGTTCAAATTTCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6140</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>147368</contig_pos>
        <strand>+</strand>
        <context>CTTTTTCCTG[A/T]CTAGAASGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACGAACGAGCTGTGGGGTAAAACTAGTATTATAAGGATTCTTTTTCCTG</left_flank>
        <right_flank>CTAGAAGGCTATTTTTGCTTCTTTCTCCATTTTGTATAATTAAGAAGACT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCGAAAATAAAAATTTAAAAAAAAGTATACTCAAATTTAATGAAACTGCACAAGCCATATTCCGGGGAAACTCGTTAGCTGCGAAAAATTTGTTTAATCTAAATTCGGACGTTTTTACAAGGTTTCTCAGTTTTTAAAAAATTTTGATTTCACAAAATACTTGAAAACGTTTTTTCTCTGCTAGCCAAACCGCTATAAAAAAAGAAATTTTAAATGAAAATTGGGTATATATGACGAAAAATGGAAAATTAAAAAAATGAGATTTTGAAATAATTCTTACTATTAGCTAATAAAAAAAGTAGTAAAGTCACAATTCCAACTAACAAGCAGCCTACCAAAATAGTGTTAATCACTCAATTTATTATCTAACTCTGCAAGCAAGACTCTTAATTCTAGTCCTGATAACCCTAACCAATATATTACGACCTGATAAAAATAAGATAAGAAAACGAACGAGCTGTGGGGTAAAACTAGTATTATAAGGATTCTTTTTCCTGTCTAGAAGGCTATTTTTGCTTCTTTCTCCATTTTGTATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACAATATGAAAAGCAAAAATGCTGGTTCAAATTTCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCAAAAAGAGGATAGTTTCCTTTGGCGTCCCAGAAATTTTACTACATTTGGTCACGAAATCGCTTTGGTGAGAGAAAGAAAAAAGACGAGAAAAGATCTAAACATGGGGAGGGCATGGATCGTAAAACTGTTCGCTTTCGGTGAAGAACTCTTTTCTCGCACACAATGATGACGTAACTCCGGAGAGGTTGGCTGTTTGATGGTAGCCGTTGGTGTGAGTGGCGGTGTGGTGCATAGAAATGCGATACACATCAAGGAGTCCTATCGGTTTTTGCCCATCTTTGTTTTTGAGGCAGTTCCAATATCTGATCATGATGTGGTATGGGGTGAGGTGAGATACGAGGAATGG</canonical>
            <polymorphic>CATCGAAAATAAAAATTTAAAAAAAAGTATACTCAAATTTAATGAAACTGCACAAGCCATATTCCGGGGAAACTCGTTAGCTGCGAAAAATTTGTTTAATCTAAATTCGGACGTTTTTACAAGGTTTCTCAGTTTTTAAAAAATTTTGATTTCACAAAATACTTGAAAACGTTTTTTCTCTGCTAGCCAAACCGCTATAAAAAAAGAAATTTTAAATGAAAATTGGGTATATATGACGAAAAATGGAAAATTAAAAAAATGAGATTTTGAAATAATTCTTACTATTAGCTAATAAAAAAAGTAGTAAAGTCACAATTCCAACTAACAAGCAGCCTACCAAAATAGTGTTAATCACTCAATTTATTATCTAACTCTGCAAGCAAGACTCTTAATTCTAGTCCTGATAACCCTAACCAATATATTACGACCTGATAAAAATAAGATAAGAAAACGAACGAGCTGTGGGGTAAAACTAGTATTATAAGGATTCTTTTTCCTGWCTAGAAGGCTATTTTTGCTTCTTTCTCCATTTTGTATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACAATATGAAAAGCAAAAATGCTGGTTCAAATTTCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCAAAAAGAGGATAGTTTCCTTTGGCGTCCCAGAAATTTTACTACATTTGGTCACGAAATCGCTTTGGTGAGAGAAAGAAAAAAGACGAGAAAAGATCTAAACATGGGGAGGGCATGGATCGTAAAACTGTTCGCTTTCGGTGAAGAACTCTTTTCTCGCACACAATGATGACGTAACTCCGGAGAGGTTGGCTGTTTGATGGTAGCCGTTGGTGTGAGTGGCGGTGTGGTGCATAGAAATGCGATACACATCAAGGAGTCCTATCGGTTTTTGCCCATCTTTGTTTTTGAGGCAGTTCCAATATCTGATCATGATGTGGTATGGGGTGAGGTGAGATACGAGGAATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>400 203 131 127 101 38</canonical_bands>
                <polymorphic_bands>400 304 131 127 38</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCTAACCAATATATTACGACCT</pcr_primer_p1>
		<pcr_primer_p2>TGAATTTTATGACTGCAGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCCTAACCAATATATTACGACCTGATAAAAATAAGATAAGAAAACGAACGAGCTGTGGGGTAAAACTAGTATTATAAGGATTCTTTTTCCTGTCTAGAAGGCTATTTTTGCTTCTTTCTCCATTTTGTATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACAATATGAAAAGCAAAAATGCTGGTTCAAATTTCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCA</canonical_amplicon>
		<polymorphic_amplicon>CCCTAACCAATATATTACGACCTGATAAAAATAAGATAAGAAAACGAACGAGCTGTGGGGTAAAACTAGTATTATAAGGATTCTTTTTCCTGWCTAGAAGGCTATTTTTGCTTCTTTCTCCATTTTGTATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACAATATGAAAAGCAAAAATGCTGGTTCAAATTTCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6141</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>147375</contig_pos>
        <strand>+</strand>
        <context>CTGWCTAGAA[C/G]GCTATTTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAGCTGTGGGGTAAAACTAGTATTATAAGGATTCTTTTTCCTGTCTAGAA</left_flank>
        <right_flank>GCTATTTTTGCTTCTTTCTCCATTTTGTATAATTAAGAAGACTCTGAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAAAAATTTAAAAAAAAGTATACTCAAATTTAATGAAACTGCACAAGCCATATTCCGGGGAAACTCGTTAGCTGCGAAAAATTTGTTTAATCTAAATTCGGACGTTTTTACAAGGTTTCTCAGTTTTTAAAAAATTTTGATTTCACAAAATACTTGAAAACGTTTTTTCTCTGCTAGCCAAACCGCTATAAAAAAAGAAATTTTAAATGAAAATTGGGTATATATGACGAAAAATGGAAAATTAAAAAAATGAGATTTTGAAATAATTCTTACTATTAGCTAATAAAAAAAGTAGTAAAGTCACAATTCCAACTAACAAGCAGCCTACCAAAATAGTGTTAATCACTCAATTTATTATCTAACTCTGCAAGCAAGACTCTTAATTCTAGTCCTGATAACCCTAACCAATATATTACGACCTGATAAAAATAAGATAAGAAAACGAACGAGCTGTGGGGTAAAACTAGTATTATAAGGATTCTTTTTCCTGTCTAGAAGGCTATTTTTGCTTCTTTCTCCATTTTGTATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACAATATGAAAAGCAAAAATGCTGGTTCAAATTTCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCAAAAAGAGGATAGTTTCCTTTGGCGTCCCAGAAATTTTACTACATTTGGTCACGAAATCGCTTTGGTGAGAGAAAGAAAAAAGACGAGAAAAGATCTAAACATGGGGAGGGCATGGATCGTAAAACTGTTCGCTTTCGGTGAAGAACTCTTTTCTCGCACACAATGATGACGTAACTCCGGAGAGGTTGGCTGTTTGATGGTAGCCGTTGGTGTGAGTGGCGGTGTGGTGCATAGAAATGCGATACACATCAAGGAGTCCTATCGGTTTTTGCCCATCTTTGTTTTTGAGGCAGTTCCAATATCTGATCATGATGTGGTATGGGGTGAGGTGAGATACGAGGAATGGCAACTTC</canonical>
            <polymorphic>AATAAAAATTTAAAAAAAAGTATACTCAAATTTAATGAAACTGCACAAGCCATATTCCGGGGAAACTCGTTAGCTGCGAAAAATTTGTTTAATCTAAATTCGGACGTTTTTACAAGGTTTCTCAGTTTTTAAAAAATTTTGATTTCACAAAATACTTGAAAACGTTTTTTCTCTGCTAGCCAAACCGCTATAAAAAAAGAAATTTTAAATGAAAATTGGGTATATATGACGAAAAATGGAAAATTAAAAAAATGAGATTTTGAAATAATTCTTACTATTAGCTAATAAAAAAAGTAGTAAAGTCACAATTCCAACTAACAAGCAGCCTACCAAAATAGTGTTAATCACTCAATTTATTATCTAACTCTGCAAGCAAGACTCTTAATTCTAGTCCTGATAACCCTAACCAATATATTACGACCTGATAAAAATAAGATAAGAAAACGAACGAGCTGTGGGGTAAAACTAGTATTATAAGGATTCTTTTTCCTGTCTAGAASGCTATTTTTGCTTCTTTCTCCATTTTGTATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACAATATGAAAAGCAAAAATGCTGGTTCAAATTTCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCAAAAAGAGGATAGTTTCCTTTGGCGTCCCAGAAATTTTACTACATTTGGTCACGAAATCGCTTTGGTGAGAGAAAGAAAAAAGACGAGAAAAGATCTAAACATGGGGAGGGCATGGATCGTAAAACTGTTCGCTTTCGGTGAAGAACTCTTTTCTCGCACACAATGATGACGTAACTCCGGAGAGGTTGGCTGTTTGATGGTAGCCGTTGGTGTGAGTGGCGGTGTGGTGCATAGAAATGCGATACACATCAAGGAGTCCTATCGGTTTTTGCCCATCTTTGTTTTTGAGGCAGTTCCAATATCTGATCATGATGTGGTATGGGGTGAGGTGAGATACGAGGAATGGCAACTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>335 150 127 106 102 49 49 44 24 14</canonical_bands>
                <polymorphic_bands>384 150 127 106 102 49 44 24 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCTAACCAATATATTACGACCT</pcr_primer_p1>
		<pcr_primer_p2>TGAATTTTATGACTGCAGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCCTAACCAATATATTACGACCTGATAAAAATAAGATAAGAAAACGAACGAGCTGTGGGGTAAAACTAGTATTATAAGGATTCTTTTTCCTGTCTAGAAGGCTATTTTTGCTTCTTTCTCCATTTTGTATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACAATATGAAAAGCAAAAATGCTGGTTCAAATTTCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCA</canonical_amplicon>
		<polymorphic_amplicon>CCCTAACCAATATATTACGACCTGATAAAAATAAGATAAGAAAACGAACGAGCTGTGGGGTAAAACTAGTATTATAAGGATTCTTTTTCCTGTCTAGAASGCTATTTTTGCTTCTTTCTCCATTTTGTATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACAATATGAAAAGCAAAAATGCTGGTTCAAATTTCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6142</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>147399</contig_pos>
        <strand>+</strand>
        <context>CTTTCTCCAT[C/T]TTGYATAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAAGGATTCTTTTTCCTGTCTAGAAGGCTATTTTTGCTTCTTTCTCCAT</left_flank>
        <right_flank>TTGTATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAAATTTAATGAAACTGCACAAGCCATATTCCGGGGAAACTCGTTAGCTGCGAAAAATTTGTTTAATCTAAATTCGGACGTTTTTACAAGGTTTCTCAGTTTTTAAAAAATTTTGATTTCACAAAATACTTGAAAACGTTTTTTCTCTGCTAGCCAAACCGCTATAAAAAAAGAAATTTTAAATGAAAATTGGGTATATATGACGAAAAATGGAAAATTAAAAAAATGAGATTTTGAAATAATTCTTACTATTAGCTAATAAAAAAAGTAGTAAAGTCACAATTCCAACTAACAAGCAGCCTACCAAAATAGTGTTAATCACTCAATTTATTATCTAACTCTGCAAGCAAGACTCTTAATTCTAGTCCTGATAACCCTAACCAATATATTACGACCTGATAAAAATAAGATAAGAAAACGAACGAGCTGTGGGGTAAAACTAGTATTATAAGGATTCTTTTTCCTGTCTAGAAGGCTATTTTTGCTTCTTTCTCCATTTTGTATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACAATATGAAAAGCAAAAATGCTGGTTCAAATTTCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCAAAAAGAGGATAGTTTCCTTTGGCGTCCCAGAAATTTTACTACATTTGGTCACGAAATCGCTTTGGTGAGAGAAAGAAAAAAGACGAGAAAAGATCTAAACATGGGGAGGGCATGGATCGTAAAACTGTTCGCTTTCGGTGAAGAACTCTTTTCTCGCACACAATGATGACGTAACTCCGGAGAGGTTGGCTGTTTGATGGTAGCCGTTGGTGTGAGTGGCGGTGTGGTGCATAGAAATGCGATACACATCAAGGAGTCCTATCGGTTTTTGCCCATCTTTGTTTTTGAGGCAGTTCCAATATCTGATCATGATGTGGTATGGGGTGAGGTGAGATACGAGGAATGGCAACTTCAGGAAAAAAATTGGAAATTCTGAT</canonical>
            <polymorphic>CTCAAATTTAATGAAACTGCACAAGCCATATTCCGGGGAAACTCGTTAGCTGCGAAAAATTTGTTTAATCTAAATTCGGACGTTTTTACAAGGTTTCTCAGTTTTTAAAAAATTTTGATTTCACAAAATACTTGAAAACGTTTTTTCTCTGCTAGCCAAACCGCTATAAAAAAAGAAATTTTAAATGAAAATTGGGTATATATGACGAAAAATGGAAAATTAAAAAAATGAGATTTTGAAATAATTCTTACTATTAGCTAATAAAAAAAGTAGTAAAGTCACAATTCCAACTAACAAGCAGCCTACCAAAATAGTGTTAATCACTCAATTTATTATCTAACTCTGCAAGCAAGACTCTTAATTCTAGTCCTGATAACCCTAACCAATATATTACGACCTGATAAAAATAAGATAAGAAAACGAACGAGCTGTGGGGTAAAACTAGTATTATAAGGATTCTTTTTCCTGTCTAGAAGGCTATTTTTGCTTCTTTCTCCATYTTGTATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACAATATGAAAAGCAAAAATGCTGGTTCAAATTTCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCAAAAAGAGGATAGTTTCCTTTGGCGTCCCAGAAATTTTACTACATTTGGTCACGAAATCGCTTTGGTGAGAGAAAGAAAAAAGACGAGAAAAGATCTAAACATGGGGAGGGCATGGATCGTAAAACTGTTCGCTTTCGGTGAAGAACTCTTTTCTCGCACACAATGATGACGTAACTCCGGAGAGGTTGGCTGTTTGATGGTAGCCGTTGGTGTGAGTGGCGGTGTGGTGCATAGAAATGCGATACACATCAAGGAGTCCTATCGGTTTTTGCCCATCTTTGTTTTTGAGGCAGTTCCAATATCTGATCATGATGTGGTATGGGGTGAGGTGAGATACGAGGAATGGCAACTTCAGGAAAAAAATTGGAAATTCTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCTAACCAATATATTACGACCT</pcr_primer_p1>
		<pcr_primer_p2>TGAATTTTATGACTGCAGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCCTAACCAATATATTACGACCTGATAAAAATAAGATAAGAAAACGAACGAGCTGTGGGGTAAAACTAGTATTATAAGGATTCTTTTTCCTGTCTAGAAGGCTATTTTTGCTTCTTTCTCCATTTTGTATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACAATATGAAAAGCAAAAATGCTGGTTCAAATTTCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCA</canonical_amplicon>
		<polymorphic_amplicon>CCCTAACCAATATATTACGACCTGATAAAAATAAGATAAGAAAACGAACGAGCTGTGGGGTAAAACTAGTATTATAAGGATTCTTTTTCCTGTCTAGAAGGCTATTTTTGCTTCTTTCTCCATYTTGTATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACAATATGAAAAGCAAAAATGCTGGTTCAAATTTCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6143</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>147403</contig_pos>
        <strand>+</strand>
        <context>CTCCATYTTG[C/T]ATAATTAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGATTCTTTTTCCTGTCTAGAAGGCTATTTTTGCTTCTTTCTCCATTTTG</left_flank>
        <right_flank>ATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTAATGAAACTGCACAAGCCATATTCCGGGGAAACTCGTTAGCTGCGAAAAATTTGTTTAATCTAAATTCGGACGTTTTTACAAGGTTTCTCAGTTTTTAAAAAATTTTGATTTCACAAAATACTTGAAAACGTTTTTTCTCTGCTAGCCAAACCGCTATAAAAAAAGAAATTTTAAATGAAAATTGGGTATATATGACGAAAAATGGAAAATTAAAAAAATGAGATTTTGAAATAATTCTTACTATTAGCTAATAAAAAAAGTAGTAAAGTCACAATTCCAACTAACAAGCAGCCTACCAAAATAGTGTTAATCACTCAATTTATTATCTAACTCTGCAAGCAAGACTCTTAATTCTAGTCCTGATAACCCTAACCAATATATTACGACCTGATAAAAATAAGATAAGAAAACGAACGAGCTGTGGGGTAAAACTAGTATTATAAGGATTCTTTTTCCTGTCTAGAAGGCTATTTTTGCTTCTTTCTCCATTTTGTATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACAATATGAAAAGCAAAAATGCTGGTTCAAATTTCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCAAAAAGAGGATAGTTTCCTTTGGCGTCCCAGAAATTTTACTACATTTGGTCACGAAATCGCTTTGGTGAGAGAAAGAAAAAAGACGAGAAAAGATCTAAACATGGGGAGGGCATGGATCGTAAAACTGTTCGCTTTCGGTGAAGAACTCTTTTCTCGCACACAATGATGACGTAACTCCGGAGAGGTTGGCTGTTTGATGGTAGCCGTTGGTGTGAGTGGCGGTGTGGTGCATAGAAATGCGATACACATCAAGGAGTCCTATCGGTTTTTGCCCATCTTTGTTTTTGAGGCAGTTCCAATATCTGATCATGATGTGGTATGGGGTGAGGTGAGATACGAGGAATGGCAACTTCAGGAAAAAAATTGGAAATTCTGATTTAG</canonical>
            <polymorphic>AATTTAATGAAACTGCACAAGCCATATTCCGGGGAAACTCGTTAGCTGCGAAAAATTTGTTTAATCTAAATTCGGACGTTTTTACAAGGTTTCTCAGTTTTTAAAAAATTTTGATTTCACAAAATACTTGAAAACGTTTTTTCTCTGCTAGCCAAACCGCTATAAAAAAAGAAATTTTAAATGAAAATTGGGTATATATGACGAAAAATGGAAAATTAAAAAAATGAGATTTTGAAATAATTCTTACTATTAGCTAATAAAAAAAGTAGTAAAGTCACAATTCCAACTAACAAGCAGCCTACCAAAATAGTGTTAATCACTCAATTTATTATCTAACTCTGCAAGCAAGACTCTTAATTCTAGTCCTGATAACCCTAACCAATATATTACGACCTGATAAAAATAAGATAAGAAAACGAACGAGCTGTGGGGTAAAACTAGTATTATAAGGATTCTTTTTCCTGTCTAGAAGGCTATTTTTGCTTCTTTCTCCATTTTGYATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACAATATGAAAAGCAAAAATGCTGGTTCAAATTTCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCAAAAAGAGGATAGTTTCCTTTGGCGTCCCAGAAATTTTACTACATTTGGTCACGAAATCGCTTTGGTGAGAGAAAGAAAAAAGACGAGAAAAGATCTAAACATGGGGAGGGCATGGATCGTAAAACTGTTCGCTTTCGGTGAAGAACTCTTTTCTCGCACACAATGATGACGTAACTCCGGAGAGGTTGGCTGTTTGATGGTAGCCGTTGGTGTGAGTGGCGGTGTGGTGCATAGAAATGCGATACACATCAAGGAGTCCTATCGGTTTTTGCCCATCTTTGTTTTTGAGGCAGTTCCAATATCTGATCATGATGTGGTATGGGGTGAGGTGAGATACGAGGAATGGCAACTTCAGGAAAAAAATTGGAAATTCTGATTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCTAACCAATATATTACGACCT</pcr_primer_p1>
		<pcr_primer_p2>TGAATTTTATGACTGCAGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCCTAACCAATATATTACGACCTGATAAAAATAAGATAAGAAAACGAACGAGCTGTGGGGTAAAACTAGTATTATAAGGATTCTTTTTCCTGTCTAGAAGGCTATTTTTGCTTCTTTCTCCATTTTGTATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACAATATGAAAAGCAAAAATGCTGGTTCAAATTTCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCA</canonical_amplicon>
		<polymorphic_amplicon>CCCTAACCAATATATTACGACCTGATAAAAATAAGATAAGAAAACGAACGAGCTGTGGGGTAAAACTAGTATTATAAGGATTCTTTTTCCTGTCTAGAAGGCTATTTTTGCTTCTTTCTCCATTTTGYATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACAATATGAAAAGCAAAAATGCTGGTTCAAATTTCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6144</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>147534</contig_pos>
        <strand>+</strand>
        <context>AAAGAGGATA[G/T]TTTYCTTTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCAAAAAGAGGATA</left_flank>
        <right_flank>TTTCCTTTGGCGTCCCAGAAATTTTACTACATTTGGTCACGAAATCGCTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACGTTTTTTCTCTGCTAGCCAAACCGCTATAAAAAAAGAAATTTTAAATGAAAATTGGGTATATATGACGAAAAATGGAAAATTAAAAAAATGAGATTTTGAAATAATTCTTACTATTAGCTAATAAAAAAAGTAGTAAAGTCACAATTCCAACTAACAAGCAGCCTACCAAAATAGTGTTAATCACTCAATTTATTATCTAACTCTGCAAGCAAGACTCTTAATTCTAGTCCTGATAACCCTAACCAATATATTACGACCTGATAAAAATAAGATAAGAAAACGAACGAGCTGTGGGGTAAAACTAGTATTATAAGGATTCTTTTTCCTGTCTAGAAGGCTATTTTTGCTTCTTTCTCCATTTTGTATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACAATATGAAAAGCAAAAATGCTGGTTCAAATTTCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCAAAAAGAGGATAGTTTCCTTTGGCGTCCCAGAAATTTTACTACATTTGGTCACGAAATCGCTTTGGTGAGAGAAAGAAAAAAGACGAGAAAAGATCTAAACATGGGGAGGGCATGGATCGTAAAACTGTTCGCTTTCGGTGAAGAACTCTTTTCTCGCACACAATGATGACGTAACTCCGGAGAGGTTGGCTGTTTGATGGTAGCCGTTGGTGTGAGTGGCGGTGTGGTGCATAGAAATGCGATACACATCAAGGAGTCCTATCGGTTTTTGCCCATCTTTGTTTTTGAGGCAGTTCCAATATCTGATCATGATGTGGTATGGGGTGAGGTGAGATACGAGGAATGGCAACTTCAGGAAAAAAATTGGAAATTCTGATTTAGAAATGAAGTCTTCTTCAGCAGAAAACTGACTGATTAGGTTAACAACTTCGATAAAGATTTCCATATAATTTTCACCTCGAAATATGTGTTTCGTACAATTATTTTTATCATCTAAATACGTGTGTAGAAGA</canonical>
            <polymorphic>AAACGTTTTTTCTCTGCTAGCCAAACCGCTATAAAAAAAGAAATTTTAAATGAAAATTGGGTATATATGACGAAAAATGGAAAATTAAAAAAATGAGATTTTGAAATAATTCTTACTATTAGCTAATAAAAAAAGTAGTAAAGTCACAATTCCAACTAACAAGCAGCCTACCAAAATAGTGTTAATCACTCAATTTATTATCTAACTCTGCAAGCAAGACTCTTAATTCTAGTCCTGATAACCCTAACCAATATATTACGACCTGATAAAAATAAGATAAGAAAACGAACGAGCTGTGGGGTAAAACTAGTATTATAAGGATTCTTTTTCCTGTCTAGAAGGCTATTTTTGCTTCTTTCTCCATTTTGTATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACAATATGAAAAGCAAAAATGCTGGTTCAAATTTCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCAAAAAGAGGATAKTTTCCTTTGGCGTCCCAGAAATTTTACTACATTTGGTCACGAAATCGCTTTGGTGAGAGAAAGAAAAAAGACGAGAAAAGATCTAAACATGGGGAGGGCATGGATCGTAAAACTGTTCGCTTTCGGTGAAGAACTCTTTTCTCGCACACAATGATGACGTAACTCCGGAGAGGTTGGCTGTTTGATGGTAGCCGTTGGTGTGAGTGGCGGTGTGGTGCATAGAAATGCGATACACATCAAGGAGTCCTATCGGTTTTTGCCCATCTTTGTTTTTGAGGCAGTTCCAATATCTGATCATGATGTGGTATGGGGTGAGGTGAGATACGAGGAATGGCAACTTCAGGAAAAAAATTGGAAATTCTGATTTAGAAATGAAGTCTTCTTCAGCAGAAAACTGACTGATTAGGTTAACAACTTCGATAAAGATTTCCATATAATTTTCACCTCGAAATATGTGTTTCGTACAATTATTTTTATCATCTAAATACGTGTGTAGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTATTTTTGCTTCTTTCTCC</pcr_primer_p1>
		<pcr_primer_p2>TGTTTAGATCTTTTCTCGTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCTATTTTTGCTTCTTTCTCCATTTTGTATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACAATATGAAAAGCAAAAATGCTGGTTCAAATTTCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCAAAAAGAGGATAGTTTCCTTTGGCGTCCCAGAAATTTTACTACATTTGGTCACGAAATCGCTTTGGTGAGAGAAAGAAAAAAGACGAGAAAAGATCTAAACA</canonical_amplicon>
		<polymorphic_amplicon>GCTATTTTTGCTTCTTTCTCCATTTTGTATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACAATATGAAAAGCAAAAATGCTGGTTCAAATTTCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCAAAAAGAGGATAKTTTCCTTTGGCGTCCCAGAAATTTTACTACATTTGGTCACGAAATCGCTTTGGTGAGAGAAAGAAAAAAGACGAGAAAAGATCTAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6145</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>147538</contig_pos>
        <strand>+</strand>
        <context>AGGATAKTTT[C/T]CTTTGGCGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGATCGCTCAGAAAATTCTGCAGTCATAAAATTCAAAAAGAGGATAGTTT</left_flank>
        <right_flank>CTTTGGCGTCCCAGAAATTTTACTACATTTGGTCACGAAATCGCTTTGGT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTTTCTCTGCTAGCCAAACCGCTATAAAAAAAGAAATTTTAAATGAAAATTGGGTATATATGACGAAAAATGGAAAATTAAAAAAATGAGATTTTGAAATAATTCTTACTATTAGCTAATAAAAAAAGTAGTAAAGTCACAATTCCAACTAACAAGCAGCCTACCAAAATAGTGTTAATCACTCAATTTATTATCTAACTCTGCAAGCAAGACTCTTAATTCTAGTCCTGATAACCCTAACCAATATATTACGACCTGATAAAAATAAGATAAGAAAACGAACGAGCTGTGGGGTAAAACTAGTATTATAAGGATTCTTTTTCCTGTCTAGAAGGCTATTTTTGCTTCTTTCTCCATTTTGTATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACAATATGAAAAGCAAAAATGCTGGTTCAAATTTCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCAAAAAGAGGATAGTTTCCTTTGGCGTCCCAGAAATTTTACTACATTTGGTCACGAAATCGCTTTGGTGAGAGAAAGAAAAAAGACGAGAAAAGATCTAAACATGGGGAGGGCATGGATCGTAAAACTGTTCGCTTTCGGTGAAGAACTCTTTTCTCGCACACAATGATGACGTAACTCCGGAGAGGTTGGCTGTTTGATGGTAGCCGTTGGTGTGAGTGGCGGTGTGGTGCATAGAAATGCGATACACATCAAGGAGTCCTATCGGTTTTTGCCCATCTTTGTTTTTGAGGCAGTTCCAATATCTGATCATGATGTGGTATGGGGTGAGGTGAGATACGAGGAATGGCAACTTCAGGAAAAAAATTGGAAATTCTGATTTAGAAATGAAGTCTTCTTCAGCAGAAAACTGACTGATTAGGTTAACAACTTCGATAAAGATTTCCATATAATTTTCACCTCGAAATATGTGTTTCGTACAATTATTTTTATCATCTAAATACGTGTGTAGAAGATAGT</canonical>
            <polymorphic>GTTTTTTCTCTGCTAGCCAAACCGCTATAAAAAAAGAAATTTTAAATGAAAATTGGGTATATATGACGAAAAATGGAAAATTAAAAAAATGAGATTTTGAAATAATTCTTACTATTAGCTAATAAAAAAAGTAGTAAAGTCACAATTCCAACTAACAAGCAGCCTACCAAAATAGTGTTAATCACTCAATTTATTATCTAACTCTGCAAGCAAGACTCTTAATTCTAGTCCTGATAACCCTAACCAATATATTACGACCTGATAAAAATAAGATAAGAAAACGAACGAGCTGTGGGGTAAAACTAGTATTATAAGGATTCTTTTTCCTGTCTAGAAGGCTATTTTTGCTTCTTTCTCCATTTTGTATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACAATATGAAAAGCAAAAATGCTGGTTCAAATTTCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCAAAAAGAGGATAGTTTYCTTTGGCGTCCCAGAAATTTTACTACATTTGGTCACGAAATCGCTTTGGTGAGAGAAAGAAAAAAGACGAGAAAAGATCTAAACATGGGGAGGGCATGGATCGTAAAACTGTTCGCTTTCGGTGAAGAACTCTTTTCTCGCACACAATGATGACGTAACTCCGGAGAGGTTGGCTGTTTGATGGTAGCCGTTGGTGTGAGTGGCGGTGTGGTGCATAGAAATGCGATACACATCAAGGAGTCCTATCGGTTTTTGCCCATCTTTGTTTTTGAGGCAGTTCCAATATCTGATCATGATGTGGTATGGGGTGAGGTGAGATACGAGGAATGGCAACTTCAGGAAAAAAATTGGAAATTCTGATTTAGAAATGAAGTCTTCTTCAGCAGAAAACTGACTGATTAGGTTAACAACTTCGATAAAGATTTCCATATAATTTTCACCTCGAAATATGTGTTTCGTACAATTATTTTTATCATCTAAATACGTGTGTAGAAGATAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTATTTTTGCTTCTTTCTCC</pcr_primer_p1>
		<pcr_primer_p2>TGTTTAGATCTTTTCTCGTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCTATTTTTGCTTCTTTCTCCATTTTGTATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACAATATGAAAAGCAAAAATGCTGGTTCAAATTTCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCAAAAAGAGGATAGTTTCCTTTGGCGTCCCAGAAATTTTACTACATTTGGTCACGAAATCGCTTTGGTGAGAGAAAGAAAAAAGACGAGAAAAGATCTAAACA</canonical_amplicon>
		<polymorphic_amplicon>GCTATTTTTGCTTCTTTCTCCATTTTGTATAATTAAGAAGACTCTGAAAAACCATGCAAATAAAATGAGAAATCTACAATATGAAAAGCAAAAATGCTGGTTCAAATTTCTGTGATCGCTCAGAAAATTCTGCAGTCATAAAATTCAAAAAGAGGATAGTTTYCTTTGGCGTCCCAGAAATTTTACTACATTTGGTCACGAAATCGCTTTGGTGAGAGAAAGAAAAAAGACGAGAAAAGATCTAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6146</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>149267</contig_pos>
        <strand>+</strand>
        <context>ACCCGAACGG[C/T]TTTGGGAGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGCGCACTACCTCTTCATCACGTCCGTCAGTCAGCATCAACCCGAACGG</left_flank>
        <right_flank>TTTGGGAGTAAGTAATGTAAATGACCAAGTGTGTACTCTCTATTAGTAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACACTAGGAATTTTCAAAAATTTATGTGAATGTAAAGTTTTCATTCTAGGTCTGTTTTACATTTTACAAATATCTCAAATGGATCGGAAACTGCACAGCCGAGCTCCACAGTCCTGAAAATGGTCAAAATAACAAAAAATCAACAAAAAATACGTTTTTTTTTTGAATATTTTAATGACCTGTACTGTATATCTTGAAAATACCAAAAACTACCCCTAGGCATCATTTTTTTTAATTCTGAATTCCAACGAAATCATTTTTATTCTCTCCCTTTCTAACCAAATAAAACCCAGAATAAGATGTCGGTTAGATGAATAAGACATAAAACCGCCGATGGAAATGAGCCGAATCCAAATGAAACCCATCGAATTGAATAAAAATGTTGTTTTCTCCAAACGACCATACCGAAATGTACAGATTCGGAGACAAATAAAATGCGCACACTTATTGCGCACTACCTCTTCATCACGTCCGTCAGTCAGCATCAACCCGAACGGCTTTGGGAGTAAGTAATGTAAATGACCAAGTGTGTACTCTCTATTAGTAACTTTCTCCAATGCCAAAACTTCTTGTGATGATGATAGCGTTGTCATTTTTCCCGAAAAGTACTTACGTTCAGATAGAAAAGTAGGTGAACATTGATATTAAACGTCGAGAATGAGGGATATGGAAGGGGAATAAGACAAACATGTCATTAAACCAAAACCGAAAGGCCATTTACCACCATACGAACACGGATCACATAATGACCGGGTATAGAGGCGGGGTGAACAAAAAAACGGGTGATATTTGAGATAGAATATCTTATTGAAAGAAGAAGATTGAAAAAAAAGCTCTAATGAGAAAAGGAATACTGGAACAGCCCATAAAAGCTCTCATTCCCTCAAATACAAATTCAAATCTTCTGATTTTCGAAAATGTGAATTGAACTCGAGGAGTCGCTATCAAGAAGGTCCTAAACCCAAATTAGATTGCAACTTAGAAGGAACGAAAACCAG</canonical>
            <polymorphic>AAACACTAGGAATTTTCAAAAATTTATGTGAATGTAAAGTTTTCATTCTAGGTCTGTTTTACATTTTACAAATATCTCAAATGGATCGGAAACTGCACAGCCGAGCTCCACAGTCCTGAAAATGGTCAAAATAACAAAAAATCAACAAAAAATACGTTTTTTTTTTGAATATTTTAATGACCTGTACTGTATATCTTGAAAATACCAAAAACTACCCCTAGGCATCATTTTTTTTAATTCTGAATTCCAACGAAATCATTTTTATTCTCTCCCTTTCTAACCAAATAAAACCCAGAATAAGATGTCGGTTAGATGAATAAGACATAAAACCGCCGATGGAAATGAGCCGAATCCAAATGAAACCCATCGAATTGAATAAAAATGTTGTTTTCTCCAAACGACCATACCGAAATGTACAGATTCGGAGACAAATAAAATGCGCACACTTATTGCGCACTACCTCTTCATCACGTCCGTCAGTCAGCATCAACCCGAACGGYTTTGGGAGTAAGTAATGTAAATGACCAAGTGTGTACTCTCTATTAGTAACTTTCTCCAATGCCAAAACTTCTTGTGATGATGATAGCGTTGTCATTTTTCCCGAAAAGTACTTACGTTCAGATAGAAAAGTAGGTGAACATTGATATTAAACGTCGAGAATGAGGGATATGGAAGGGGAATAAGACAAACATGTCATTAAACCAAAACCGAAAGGCCATTTACCACCATACGAACACGGATCACATAATGACCGGGTATAGAGGCGGGGTGAACAAAAAAACGGGTGATATTTGAGATAGAATATCTTATTGAAAGAAGAAGATTGAAAAAAAAGCTCTAATGAGAAAAGGAATACTGGAACAGCCCATAAAAGCTCTCATTCCCTCAAATACAAATTCAAATCTTCTGATTTTCGAAAATGTGAATTGAACTCGAGGAGTCGCTATCAAGAAGGTCCTAAACCCAAATTAGATTGCAACTTAGAAGGAACGAAAACCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>241 216 153 126 120 100 29 10 5</canonical_bands>
                <polymorphic_bands>369 241 126 120 100 29 10 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTACAGATTCGGAGACAAATA</pcr_primer_p1>
		<pcr_primer_p2>ATTCTCGACGTTTAATATCAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGTACAGATTCGGAGACAAATAAAATGCGCACACTTATTGCGCACTACCTCTTCATCACGTCCGTCAGTCAGCATCAACCCGAACGGCTTTGGGAGTAAGTAATGTAAATGACCAAGTGTGTACTCTCTATTAGTAACTTTCTCCAATGCCAAAACTTCTTGTGATGATGATAGCGTTGTCATTTTTCCCGAAAAGTACTTACGTTCAGATAGAAAAGTAGGTGAACATTGATATTAAACGTCGAGAAT</canonical_amplicon>
		<polymorphic_amplicon>ATGTACAGATTCGGAGACAAATAAAATGCGCACACTTATTGCGCACTACCTCTTCATCACGTCCGTCAGTCAGCATCAACCCGAACGGYTTTGGGAGTAAGTAATGTAAATGACCAAGTGTGTACTCTCTATTAGTAACTTTCTCCAATGCCAAAACTTCTTGTGATGATGATAGCGTTGTCATTTTTCCCGAAAAGTACTTACGTTCAGATAGAAAAGTAGGTGAACATTGATATTAAACGTCGAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6147</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>150795</contig_pos>
        <strand>+</strand>
        <context>AATTACATTA[A/T]AGAAATAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATTTTTACAATGTAAACAAAAACTGACACTTCAATACAAATTACATTA</left_flank>
        <right_flank>AGAAATAACATTGATTCTTCATCATAAAATTGCATCGGCTCTTGATCTAC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACGGTCAACAAAAAACACAAAAAAACGTATTTTTGAGTTGATTGTAACTATTTTCAGAAGTCTGGAGCTCGACTGCCAAGTTTCTGAACACTTTGAATTTTTTGGAGAGTGTGAAACAAACCTAGATTTAAAACTTTGCATCCACAGAATTTTTCGAAAATTCCCAGTTTTTTAGCTAGTTGCCGATTTCCGAAGCTCGCCCGTTATTGGCCTGTTTTTGTACACAACGCAATAAAAAGAATGTTTTTTTTCAGAAATTGGCAAGTAGCTGGAAAACTAGGAATTTTCAATAAATTCTATGAATGCAAAATTTCCAATCTAGATCTGTTTCTCACTTTCCAAAGGTATGGGAAACTTGACAGCCGAGCTCCAAATTGGTCAAAATGGTGATCAACTGAAAAAAAAATTTTCTCATCAACTGGTACTAAACTGTTGTTCAGACTAACCTAAATTTTTACAATGTAAACAAAAACTGACACTTCAATACAAATTACATTAAAGAAATAACATTGATTCTTCATCATAAAATTGCATCGGCTCTTGATCTACACTCTAAATGTATATGATCTCACCCCCCCCCCACCATCTGCGTGAGCACTTGTGCTCATTAGCATGAACAAATATCTGAGTGGAACTGCCGCCCGAAACGAACACAGTCCGGCCCATTTACCAATAGAAATAGGTTTAGACGAAATGAACTGGATGGATGGTTCGATGCCCATTTTTCGAAGGGATTATCCTTCTTTGTCTTTCCTTTTCAACCGTCTGCTCAATTGTACTTCTTGAGGAAAAAGAAGGCCGCCAAAGACAAAAGGGAACAATTTGAAAGAAAAACTACAGTAAATTCTTCATGGTTTGTCCTCCTCATTGATAAGAAAAAACACTTTTTCTGATTCATCCGACATGCATTATTGTGTTGAAAGAAATAAAAGAAAGGATTGACAGTATAAATGAAATGTCGGCACATACAGTTCCCATGTCTTTTTCCCTTTGTTGCTT</canonical>
            <polymorphic>AACGGTCAACAAAAAACACAAAAAAACGTATTTTTGAGTTGATTGTAACTATTTTCAGAAGTCTGGAGCTCGACTGCCAAGTTTCTGAACACTTTGAATTTTTTGGAGAGTGTGAAACAAACCTAGATTTAAAACTTTGCATCCACAGAATTTTTCGAAAATTCCCAGTTTTTTAGCTAGTTGCCGATTTCCGAAGCTCGCCCGTTATTGGCCTGTTTTTGTACACAACGCAATAAAAAGAATGTTTTTTTTCAGAAATTGGCAAGTAGCTGGAAAACTAGGAATTTTCAATAAATTCTATGAATGCAAAATTTCCAATCTAGATCTGTTTCTCACTTTCCAAAGGTATGGGAAACTTGACAGCCGAGCTCCAAATTGGTCAAAATGGTGATCAACTGAAAAAAAAATTTTCTCATCAACTGGTACTAAACTGTTGTTCAGACTAACCTAAATTTTTACAATGTAAACAAAAACTGACACTTCAATACAAATTACATTAWAGAAATAACATTGATTCTTCATCATAAAATTGCATCGGCTCTTGATCTACACTCTAAATGTATATGATCTCACCCCCCCCCCACCATCTGCGTGAGCACTTGTGCTCATTAGCATGAACAAATATCTGAGTGGAACTGCCGCCCGAAACGAACACAGTCCGGCCCATTTACCAATAGAAATAGGTTTAGACGAAATGAACTGGATGGATGGTTCGATGCCCATTTTTCGAAGGGATTATCCTTCTTTGTCTTTCCTTTTCAACCGTCTGCTCAATTGTACTTCTTGAGGAAAAAGAAGGCCGCCAAAGACAAAAGGGAACAATTTGAAAGAAAAACTACAGTAAATTCTTCATGGTTTGTCCTCCTCATTGATAAGAAAAAACACTTTTTCTGATTCATCCGACATGCATTATTGTGTTGAAAGAAATAAAAGAAAGGATTGACAGTATAAATGAAATGTCGGCACATACAGTTCCCATGTCTTTTTCCCTTTGTTGCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>503 368 129</canonical_bands>
                <polymorphic_bands>871 129</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAGACTAACCTAAATTTTTACAATG</pcr_primer_p1>
		<pcr_primer_p2>TCTAAACCTATTTCTATTGGTAAATG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TCAGACTAACCTAAATTTTTACAATGTAAACAAAAACTGACACTTCAATACAAATTACATTAAAGAAATAACATTGATTCTTCATCATAAAATTGCATCGGCTCTTGATCTACACTCTAAATGTATATGATCTCACCCCCCCCCCACCATCTGCGTGAGCACTTGTGCTCATTAGCATGAACAAATATCTGAGTGGAACTGCCGCCCGAAACGAACACAGTCCGGCCCATTTACCAATAGAAATAGGTTTAGA</canonical_amplicon>
		<polymorphic_amplicon>TCAGACTAACCTAAATTTTTACAATGTAAACAAAAACTGACACTTCAATACAAATTACATTAWAGAAATAACATTGATTCTTCATCATAAAATTGCATCGGCTCTTGATCTACACTCTAAATGTATATGATCTCACCCCCCCCCCACCATCTGCGTGAGCACTTGTGCTCATTAGCATGAACAAATATCTGAGTGGAACTGCCGCCCGAAACGAACACAGTCCGGCCCATTTACCAATAGAAATAGGTTTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6148</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>159837</contig_pos>
        <strand>+</strand>
        <context>TTGCTAGAAA[A/T]TTCTACTAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTCATTTTTCATGTTTGGTTTGTTTGTTTGGAAGTTCACTTGCTAGAAA</left_flank>
        <right_flank>TTCTACTAGGCGCCGGATAAACTGGGCCGGGCCCTCAAAAGGTGGAAAAA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGAAATGTAAAACAGACATGAATCGAAAAGTTTGCATTTAGAATATTTTTTTATTCCTAGTTTTTCACATCAGCTATTCGCCAATTTTTGAAAGCCACCTGTTTTTCTCACATTTTCAGTACAAAAAATGGGCTAATGGAAGTCGTTTTTCAGAAAACGAGAAATACCTGAAAAACTAAGTTTTCTCGAAAATTCTGTGAAAACAAAATTTTCAATCTAGGTTTATTTCACACCCTCCAAAGTTTTCGAGGTGATCGGAAACTTGACAGCCAAGCTACAGGCTCTAATGGCCACAAAGCTGCAAATCACGTGTTTTCATATATTCATGGCTAGCACTATTCAGTTATTCCAAAAAACATTCTTGTGAAATTAATTCCCAGCATACCAAAGAACAGTATTAAAAGTTCAGTATTTTTAAGCCGATTTCTGAACTCTTACTATAACGTTTTCTCATTTTTCATGTTTGGTTTGTTTGTTTGGAAGTTCACTTGCTAGAAATTTCTACTAGGCGCCGGATAAACTGGGCCGGGCCCTCAAAAGGTGGAAAAAAGCCCAACAAGTATTTAAATAATTAAATTCAAATCTTCATCTCAAAAATTTCAATCATTTCCAGGAATCAACATTTCACTACAACACGGGATATTTTCAAATATGTCGAGTTCATATCAATAACAACTCAGGAATCATTTACGATGAAATGGAAATACCACGTAATTAGGTTATCACTGTTTACAGATTATCAAAAACATTTTTCAGCATCCGAAAGTGAATATAAATGTTATCTCAACCCGCTTCTCTCTCAAGTGGATCTCACAGACATTTCGCTTGCCTCTCTCGCTGTAATTAGTGAGTTTCCTGATATTTCAGGTGACGTTGTAAACATTCTCAAAACTTTTTTTCAGTACGACTTGGTTCACCAGCTCTTCTACATGTAACCGGTGCTCTGGTATGCTGTTTTGCCTTCTTCTTGGGAGTTGTTGGCCATATCCGATCGTCATT</canonical>
            <polymorphic>GGGAAATGTAAAACAGACATGAATCGAAAAGTTTGCATTTAGAATATTTTTTTATTCCTAGTTTTTCACATCAGCTATTCGCCAATTTTTGAAAGCCACCTGTTTTTCTCACATTTTCAGTACAAAAAATGGGCTAATGGAAGTCGTTTTTCAGAAAACGAGAAATACCTGAAAAACTAAGTTTTCTCGAAAATTCTGTGAAAACAAAATTTTCAATCTAGGTTTATTTCACACCCTCCAAAGTTTTCGAGGTGATCGGAAACTTGACAGCCAAGCTACAGGCTCTAATGGCCACAAAGCTGCAAATCACGTGTTTTCATATATTCATGGCTAGCACTATTCAGTTATTCCAAAAAACATTCTTGTGAAATTAATTCCCAGCATACCAAAGAACAGTATTAAAAGTTCAGTATTTTTAAGCCGATTTCTGAACTCTTACTATAACGTTTTCTCATTTTTCATGTTTGGTTTGTTTGTTTGGAAGTTCACTTGCTAGAAAWTTCTACTAGGCGCCGGATAAACTGGGCCGGGCCCTCAAAAGGTGGAAAAAAGCCCAACAAGTATTTAAATAATTAAATTCAAATCTTCATCTCAAAAATTTCAATCATTTCCAGGAATCAACATTTCACTACAACACGGGATATTTTCAAATATGTCGAGTTCATATCAATAACAACTCAGGAATCATTTACGATGAAATGGAAATACCACGTAATTAGGTTATCACTGTTTACAGATTATCAAAAACATTTTTCAGCATCCGAAAGTGAATATAAATGTTATCTCAACCCGCTTCTCTCTCAAGTGGATCTCACAGACATTTCGCTTGCCTCTCTCGCTGTAATTAGTGAGTTTCCTGATATTTCAGGTGACGTTGTAAACATTCTCAAAACTTTTTTTCAGTACGACTTGGTTCACCAGCTCTTCTACATGTAACCGGTGCTCTGGTATGCTGTTTTGCCTTCTTCTTGGGAGTTGTTGGCCATATCCGATCGTCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>404 290 191 78 21 16</canonical_bands>
                <polymorphic_bands>404 368 191 21 16</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>161 158 129 125 117 108 83 73 21 16 5 4</canonical_bands>
                <polymorphic_bands>198 161 158 129 117 108 83 21 16 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAACGTTTTCTCATTTTTCATGT</pcr_primer_p1>
		<pcr_primer_p2>AAATGATTCCTGAGTTGTTATTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAACGTTTTCTCATTTTTCATGTTTGGTTTGTTTGTTTGGAAGTTCACTTGCTAGAAATTTCTACTAGGCGCCGGATAAACTGGGCCGGGCCCTCAAAAGGTGGAAAAAAGCCCAACAAGTATTTAAATAATTAAATTCAAATCTTCATCTCAAAAATTTCAATCATTTCCAGGAATCAACATTTCACTACAACACGGGATATTTTCAAATATGTCGAGTTCATATCAATAACAACTCAGGAATCATTT</canonical_amplicon>
		<polymorphic_amplicon>TAACGTTTTCTCATTTTTCATGTTTGGTTTGTTTGTTTGGAAGTTCACTTGCTAGAAAWTTCTACTAGGCGCCGGATAAACTGGGCCGGGCCCTCAAAAGGTGGAAAAAAGCCCAACAAGTATTTAAATAATTAAATTCAAATCTTCATCTCAAAAATTTCAATCATTTCCAGGAATCAACATTTCACTACAACACGGGATATTTTCAAATATGTCGAGTTCATATCAATAACAACTCAGGAATCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6149</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>159760</contig_pos>
        <strand>+</strand>
        <context>TTTTTAAGCC[A/G]ATTTCTGAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTCCCAGCATACCAAAGAACAGTATTAAAAGTTCAGTATTTTTAAGCC</left_flank>
        <right_flank>ATTTCTGAACTCTTACTATAACGTTTTCTCATTTTTCATGTTTGGTTTGT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATACAAAAACTTTTTTCGGTTGATTTCTACTACTTCTGCAGCTCGGCTGTCAAGCTTCCCATCACTTCGAAGATTTTGGGAAATGTAAAACAGACATGAATCGAAAAGTTTGCATTTAGAATATTTTTTTATTCCTAGTTTTTCACATCAGCTATTCGCCAATTTTTGAAAGCCACCTGTTTTTCTCACATTTTCAGTACAAAAAATGGGCTAATGGAAGTCGTTTTTCAGAAAACGAGAAATACCTGAAAAACTAAGTTTTCTCGAAAATTCTGTGAAAACAAAATTTTCAATCTAGGTTTATTTCACACCCTCCAAAGTTTTCGAGGTGATCGGAAACTTGACAGCCAAGCTACAGGCTCTAATGGCCACAAAGCTGCAAATCACGTGTTTTCATATATTCATGGCTAGCACTATTCAGTTATTCCAAAAAACATTCTTGTGAAATTAATTCCCAGCATACCAAAGAACAGTATTAAAAGTTCAGTATTTTTAAGCCGATTTCTGAACTCTTACTATAACGTTTTCTCATTTTTCATGTTTGGTTTGTTTGTTTGGAAGTTCACTTGCTAGAAATTTCTACTAGGCGCCGGATAAACTGGGCCGGGCCCTCAAAAGGTGGAAAAAAGCCCAACAAGTATTTAAATAATTAAATTCAAATCTTCATCTCAAAAATTTCAATCATTTCCAGGAATCAACATTTCACTACAACACGGGATATTTTCAAATATGTCGAGTTCATATCAATAACAACTCAGGAATCATTTACGATGAAATGGAAATACCACGTAATTAGGTTATCACTGTTTACAGATTATCAAAAACATTTTTCAGCATCCGAAAGTGAATATAAATGTTATCTCAACCCGCTTCTCTCTCAAGTGGATCTCACAGACATTTCGCTTGCCTCTCTCGCTGTAATTAGTGAGTTTCCTGATATTTCAGGTGACGTTGTAAACATTCTCAAAACTTTTTTTCAGTACGACTTGGTTCACCAGCT</canonical>
            <polymorphic>ATACAAAAACTTTTTTCGGTTGATTTCTACTACTTCTGCAGCTCGGCTGTCAAGCTTCCCATCACTTCGAAGATTTTGGGAAATGTAAAACAGACATGAATCGAAAAGTTTGCATTTAGAATATTTTTTTATTCCTAGTTTTTCACATCAGCTATTCGCCAATTTTTGAAAGCCACCTGTTTTTCTCACATTTTCAGTACAAAAAATGGGCTAATGGAAGTCGTTTTTCAGAAAACGAGAAATACCTGAAAAACTAAGTTTTCTCGAAAATTCTGTGAAAACAAAATTTTCAATCTAGGTTTATTTCACACCCTCCAAAGTTTTCGAGGTGATCGGAAACTTGACAGCCAAGCTACAGGCTCTAATGGCCACAAAGCTGCAAATCACGTGTTTTCATATATTCATGGCTAGCACTATTCAGTTATTCCAAAAAACATTCTTGTGAAATTAATTCCCAGCATACCAAAGAACAGTATTAAAAGTTCAGTATTTTTAAGCCRATTTCTGAACTCTTACTATAACGTTTTCTCATTTTTCATGTTTGGTTTGTTTGTTTGGAAGTTCACTTGCTAGAAATTTCTACTAGGCGCCGGATAAACTGGGCCGGGCCCTCAAAAGGTGGAAAAAAGCCCAACAAGTATTTAAATAATTAAATTCAAATCTTCATCTCAAAAATTTCAATCATTTCCAGGAATCAACATTTCACTACAACACGGGATATTTTCAAATATGTCGAGTTCATATCAATAACAACTCAGGAATCATTTACGATGAAATGGAAATACCACGTAATTAGGTTATCACTGTTTACAGATTATCAAAAACATTTTTCAGCATCCGAAAGTGAATATAAATGTTATCTCAACCCGCTTCTCTCTCAAGTGGATCTCACAGACATTTCGCTTGCCTCTCTCGCTGTAATTAGTGAGTTTCCTGATATTTCAGGTGACGTTGTAAACATTCTCAAAACTTTTTTTCAGTACGACTTGGTTCACCAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGAAATTAATTCCCAGCATAC</pcr_primer_p1>
		<pcr_primer_p2>AAATGATTGAAATTTTTGAGATG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTGAAATTAATTCCCAGCATACCAAAGAACAGTATTAAAAGTTCAGTATTTTTAAGCCGATTTCTGAACTCTTACTATAACGTTTTCTCATTTTTCATGTTTGGTTTGTTTGTTTGGAAGTTCACTTGCTAGAAATTTCTACTAGGCGCCGGATAAACTGGGCCGGGCCCTCAAAAGGTGGAAAAAAGCCCAACAAGTATTTAAATAATTAAATTCAAATCTTCATCTCAAAAATTTCAATCATTT</canonical_amplicon>
		<polymorphic_amplicon>GTGAAATTAATTCCCAGCATACCAAAGAACAGTATTAAAAGTTCAGTATTTTTAAGCCRATTTCTGAACTCTTACTATAACGTTTTCTCATTTTTCATGTTTGGTTTGTTTGTTTGGAAGTTCACTTGCTAGAAATTTCTACTAGGCGCCGGATAAACTGGGCCGGGCCCTCAAAAGGTGGAAAAAAGCCCAACAAGTATTTAAATAATTAAATTCAAATCTTCATCTCAAAAATTTCAATCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6150</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>217303</contig_pos>
        <strand></strand>
        <context>ATGTTCTCAA[G/A]GGACCCTTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCGTCAAAAAAATTTGTGAACAAAATTCTGAATTTTCAGAATGTTCTCAA</left_flank>
        <right_flank>GGACCCTTATTTTTGATTTATAGAAACCTGACATTATGAGAAAACTTACT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAAAAAATTTTCGAAAAACTGAAAATTTCGCAAAGGGGTACCCATGGCAAAAATTTTTTTTTTCGAAAAATGAGGAAACTTTGTCAGATTGTAGAGAAACCTTTGAAATTGCGACTGACACTTAAACAATGCCAAAAAACTCCCATTAACCCTTTCAAAAACTCACTCCAAAAATGAGAAATTAGTACTGAAATCACCTAAACAGCCCATAACTCCACTTCTAGAAATTTGTGCAGAAAACCGAATACATCAAAAGAAAGCCCGTATTTGAAACTATAACTGAGCAAATTTAGAAAAATGTCTGAGATGAAGGCTAAACATGGTTCCCTTGTGAGCTATCTTAGAATATTTTTAGCCTAGAGAGTATTTTTTAGGTCTTTTCAAATGATTTCTCGAGTCAATAAGTAAGAACAAAGTTTTTGTAAAATGAAAGTTTGCAAAAAATCATTCGTCAAAAAAATTTGTGAACAAAATTCTGAATTTTCAGAATGTTCTCAAGGGACCCTTATTTTTGATTTATAGAAACCTGACATTATGAGAAAACTTACTTGATATGGAAAAAGTGTGGAAGTGTTGACTTTGTCCCAGGCTTCAGCAATTGTTTTTTTCATGACCTCGAAAGAAGGTACTTTTCGTGTCCAGAACTGAAAATATGGAAATAGACGTTTTTAGAAGATAAGGCCCAGGAAATGTACATAAGTATAGCATAAGTACGGTGAATAAAGTTTACAAAAACGTATTTATCAGTTGATTTTCAGCCATTATCAGTAGTATGGAGCTCGGCTTCCAAGTTTCCTACGTTTGGAAATGTAAAACAGTGTTTGGAAATGTAAAACAGACCTAGACTGAAAACTTTGCATTCACAGAATTTTCTGAAAATGCCTAGTTTTTCAGTTATTTGTCGATCTCTATGAGACACCTGTATTTTCAACTTTTCGAAACGATAACAAAAAAGGAGCTCTTCCAAAACTTGGTAAATAACTGAAAAACTAGAAATTC</canonical>
            <polymorphic>TTAAAAAATTTTCGAAAAACTGAAAATTTCGCAAAGGGGTACCCATGGCAAAAATTTTTTTTTTCGAAAAATGAGGAAACTTTGTCAGATTGTAGAGAAACCTTTGAAATTGCGACTGACACTTAAACAATGCCAAAAAACTCCCATTAACCCTTTCAAAAACTCACTCCAAAAATGAGAAATTAGTACTGAAATCACCTAAACAGCCCATAACTCCACTTCTAGAAATTTGTGCAGAAAACCGAATACATCAAAAGAAAGCCCGTATTTGAAACTATAACTGAGCAAATTTAGAAAAATGTCTGAGATGAAGGCTAAACATGGTTCCCTTGTGAGCTATCTTAGAATATTTTTAGCCTAGAGAGTATTTTTTAGGTCTTTTCAAATGATTTCTCGAGTCAATAAGTAAGAACAAAGTTTTTGTAAAATGAAAGTTTGCAAAAAATCATTCGTCAAAAAAATTTGTGAACAAAATTCTGAATTTTCAGAATGTTCTCAARGGACCCTTATTTTTGATTTATAGAAACCTGACATTATGAGAAAACTTACTTGATATGGAAAAAGTGTGGAAGTGTTGACTTTGTCCCAGGCTTCAGCAATTGTTTTTTTCATGACCTCGAAAGAAGGTACTTTTCGTGTCCAGAACTGAAAATATGGAAATAGACGTTTTTAGAAGATAAGGCCCAGGAAATGTACATAAGTATAGCATAAGTACGGTGAATAAAGTTTACAAAAACGTATTTATCAGTTGATTTTCAGCCATTATCAGTAGTATGGAGCTCGGCTTCCAAGTTTCCTACGTTTGGAAATGTAAAACAGTGTTTGGAAATGTAAAACAGACCTAGACTGAAAACTTTGCATTCACAGAATTTTCTGAAAATGCCTAGTTTTTCAGTTATTTGTCGATCTCTATGAGACACCTGTATTTTCAACTTTTCGAAACGATAACAAAAAAGGAGCTCTTCCAAAACTTGGTAAATAACTGAAAAACTAGAAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>498 285 177 40</canonical_bands>
                <polymorphic_bands>497 285 178 40</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGGWCCC</site>
                <isoschizomers>
                    <enzyme>SanDI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>505 393 102</canonical_bands>
                <polymorphic_bands>607 393</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACAAAGTTTTTGTAAAATGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCCATATTTTCAGTTCTGGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAACAAAGTTTTTGTAAAATGAAAGTTTGCAAAAAATCATTCGTCAAAAAAATTTGTGAACAAAATTCTGAATTTTCAGAATGTTCTCAAGGGACCCTTATTTTTGATTTATAGAAACCTGACATTATGAGAAAACTTACTTGATATGGAAAAAGTGTGGAAGTGTTGACTTTGTCCCAGGCTTCAGCAATTGTTTTTTTCATGACCTCGAAAGAAGGTACTTTTCGTGTCCAGAACTGAAAATATGGAA</canonical_amplicon>
		<polymorphic_amplicon>GAACAAAGTTTTTGTAAAATGAAAGTTTGCAAAAAATCATTCGTCAAAAAAATTTGTGAACAAAATTCTGAATTTTCAGAATGTTCTCAARGGACCCTTATTTTTGATTTATAGAAACCTGACATTATGAGAAAACTTACTTGATATGGAAAAAGTGTGGAAGTGTTGACTTTGTCCCAGGCTTCAGCAATTGTTTTTTTCATGACCTCGAAAGAAGGTACTTTTCGTGTCCAGAACTGAAAATATGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6151</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>217278</contig_pos>
        <strand></strand>
        <context>GTGAACAAAW[T/A]TCTGAATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAAATGAAAGTTTGCAAAAAATCATTCGTCAAAAAAATTTGTGAACAAAA</left_flank>
        <right_flank>TCTGAATTTTCAGAATGTTCTCAAGGGACCCTTATTTTTGATTTATAGAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGTTTAGAATTCATTTTAGCACATTTAAAAAATTTTCGAAAAACTGAAAATTTCGCAAAGGGGTACCCATGGCAAAAATTTTTTTTTTCGAAAAATGAGGAAACTTTGTCAGATTGTAGAGAAACCTTTGAAATTGCGACTGACACTTAAACAATGCCAAAAAACTCCCATTAACCCTTTCAAAAACTCACTCCAAAAATGAGAAATTAGTACTGAAATCACCTAAACAGCCCATAACTCCACTTCTAGAAATTTGTGCAGAAAACCGAATACATCAAAAGAAAGCCCGTATTTGAAACTATAACTGAGCAAATTTAGAAAAATGTCTGAGATGAAGGCTAAACATGGTTCCCTTGTGAGCTATCTTAGAATATTTTTAGCCTAGAGAGTATTTTTTAGGTCTTTTCAAATGATTTCTCGAGTCAATAAGTAAGAACAAAGTTTTTGTAAAATGAAAGTTTGCAAAAAATCATTCGTCAAAAAAATTTGTGAACAAAATTCTGAATTTTCAGAATGTTCTCAAGGGACCCTTATTTTTGATTTATAGAAACCTGACATTATGAGAAAACTTACTTGATATGGAAAAAGTGTGGAAGTGTTGACTTTGTCCCAGGCTTCAGCAATTGTTTTTTTCATGACCTCGAAAGAAGGTACTTTTCGTGTCCAGAACTGAAAATATGGAAATAGACGTTTTTAGAAGATAAGGCCCAGGAAATGTACATAAGTATAGCATAAGTACGGTGAATAAAGTTTACAAAAACGTATTTATCAGTTGATTTTCAGCCATTATCAGTAGTATGGAGCTCGGCTTCCAAGTTTCCTACGTTTGGAAATGTAAAACAGTGTTTGGAAATGTAAAACAGACCTAGACTGAAAACTTTGCATTCACAGAATTTTCTGAAAATGCCTAGTTTTTCAGTTATTTGTCGATCTCTATGAGACACCTGTATTTTCAACTTTTCGAAACGATAACAAAAAAGGAGCTCTTCCAAAACTTGG</canonical>
            <polymorphic>GCGTTTAGAATTCATTTTAGCACATTTAAAAAATTTTCGAAAAACTGAAAATTTCGCAAAGGGGTACCCATGGCAAAAATTTTTTTTTTCGAAAAATGAGGAAACTTTGTCAGATTGTAGAGAAACCTTTGAAATTGCGACTGACACTTAAACAATGCCAAAAAACTCCCATTAACCCTTTCAAAAACTCACTCCAAAAATGAGAAATTAGTACTGAAATCACCTAAACAGCCCATAACTCCACTTCTAGAAATTTGTGCAGAAAACCGAATACATCAAAAGAAAGCCCGTATTTGAAACTATAACTGAGCAAATTTAGAAAAATGTCTGAGATGAAGGCTAAACATGGTTCCCTTGTGAGCTATCTTAGAATATTTTTAGCCTAGAGAGTATTTTTTAGGTCTTTTCAAATGATTTCTCGAGTCAATAAGTAAGAACAAAGTTTTTGTAAAATGAAAGTTTGCAAAAAATCATTCGTCAAAAAAATTTGTGAACAAAAWTCTGAATTTTCAGAATGTTCTCAAGGGACCCTTATTTTTGATTTATAGAAACCTGACATTATGAGAAAACTTACTTGATATGGAAAAAGTGTGGAAGTGTTGACTTTGTCCCAGGCTTCAGCAATTGTTTTTTTCATGACCTCGAAAGAAGGTACTTTTCGTGTCCAGAACTGAAAATATGGAAATAGACGTTTTTAGAAGATAAGGCCCAGGAAATGTACATAAGTATAGCATAAGTACGGTGAATAAAGTTTACAAAAACGTATTTATCAGTTGATTTTCAGCCATTATCAGTAGTATGGAGCTCGGCTTCCAAGTTTCCTACGTTTGGAAATGTAAAACAGTGTTTGGAAATGTAAAACAGACCTAGACTGAAAACTTTGCATTCACAGAATTTTCTGAAAATGCCTAGTTTTTCAGTTATTTGTCGATCTCTATGAGACACCTGTATTTTCAACTTTTCGAAACGATAACAAAAAAGGAGCTCTTCCAAAACTTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>388 174 172 108 61 28 23 18 13 8 7</canonical_bands>
                <polymorphic_bands>388 174 172 108 61 28 23 20 18 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>270 172 118 108 73 61 55 46 28 23 18 13 8 7</canonical_bands>
                <polymorphic_bands>270 172 118 108 73 61 55 46 28 23 20 18 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACAAAGTTTTTGTAAAATGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCCATATTTTCAGTTCTGGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAACAAAGTTTTTGTAAAATGAAAGTTTGCAAAAAATCATTCGTCAAAAAAATTTGTGAACAAAATTCTGAATTTTCAGAATGTTCTCAAGGGACCCTTATTTTTGATTTATAGAAACCTGACATTATGAGAAAACTTACTTGATATGGAAAAAGTGTGGAAGTGTTGACTTTGTCCCAGGCTTCAGCAATTGTTTTTTTCATGACCTCGAAAGAAGGTACTTTTCGTGTCCAGAACTGAAAATATGGAA</canonical_amplicon>
		<polymorphic_amplicon>GAACAAAGTTTTTGTAAAATGAAAGTTTGCAAAAAATCATTCGTCAAAAAAATTTGTGAACAAAAWTCTGAATTTTCAGAATGTTCTCAAGGGACCCTTATTTTTGATTTATAGAAACCTGACATTATGAGAAAACTTACTTGATATGGAAAAAGTGTGGAAGTGTTGACTTTGTCCCAGGCTTCAGCAATTGTTTTTTTCATGACCTCGAAAGAAGGTACTTTTCGTGTCCAGAACTGAAAATATGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6152</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>217277</contig_pos>
        <strand></strand>
        <context>TGTGAACAAA[A/T]WTCTGAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAAATGAAAGTTTGCAAAAAATCATTCGTCAAAAAAATTTGTGAACAAA</left_flank>
        <right_flank>TTCTGAATTTTCAGAATGTTCTCAAGGGACCCTTATTTTTGATTTATAGA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCGTTTAGAATTCATTTTAGCACATTTAAAAAATTTTCGAAAAACTGAAAATTTCGCAAAGGGGTACCCATGGCAAAAATTTTTTTTTTCGAAAAATGAGGAAACTTTGTCAGATTGTAGAGAAACCTTTGAAATTGCGACTGACACTTAAACAATGCCAAAAAACTCCCATTAACCCTTTCAAAAACTCACTCCAAAAATGAGAAATTAGTACTGAAATCACCTAAACAGCCCATAACTCCACTTCTAGAAATTTGTGCAGAAAACCGAATACATCAAAAGAAAGCCCGTATTTGAAACTATAACTGAGCAAATTTAGAAAAATGTCTGAGATGAAGGCTAAACATGGTTCCCTTGTGAGCTATCTTAGAATATTTTTAGCCTAGAGAGTATTTTTTAGGTCTTTTCAAATGATTTCTCGAGTCAATAAGTAAGAACAAAGTTTTTGTAAAATGAAAGTTTGCAAAAAATCATTCGTCAAAAAAATTTGTGAACAAAATTCTGAATTTTCAGAATGTTCTCAAGGGACCCTTATTTTTGATTTATAGAAACCTGACATTATGAGAAAACTTACTTGATATGGAAAAAGTGTGGAAGTGTTGACTTTGTCCCAGGCTTCAGCAATTGTTTTTTTCATGACCTCGAAAGAAGGTACTTTTCGTGTCCAGAACTGAAAATATGGAAATAGACGTTTTTAGAAGATAAGGCCCAGGAAATGTACATAAGTATAGCATAAGTACGGTGAATAAAGTTTACAAAAACGTATTTATCAGTTGATTTTCAGCCATTATCAGTAGTATGGAGCTCGGCTTCCAAGTTTCCTACGTTTGGAAATGTAAAACAGTGTTTGGAAATGTAAAACAGACCTAGACTGAAAACTTTGCATTCACAGAATTTTCTGAAAATGCCTAGTTTTTCAGTTATTTGTCGATCTCTATGAGACACCTGTATTTTCAACTTTTCGAAACGATAACAAAAAAGGAGCTCTTCCAAAACTTG</canonical>
            <polymorphic>TGCGTTTAGAATTCATTTTAGCACATTTAAAAAATTTTCGAAAAACTGAAAATTTCGCAAAGGGGTACCCATGGCAAAAATTTTTTTTTTCGAAAAATGAGGAAACTTTGTCAGATTGTAGAGAAACCTTTGAAATTGCGACTGACACTTAAACAATGCCAAAAAACTCCCATTAACCCTTTCAAAAACTCACTCCAAAAATGAGAAATTAGTACTGAAATCACCTAAACAGCCCATAACTCCACTTCTAGAAATTTGTGCAGAAAACCGAATACATCAAAAGAAAGCCCGTATTTGAAACTATAACTGAGCAAATTTAGAAAAATGTCTGAGATGAAGGCTAAACATGGTTCCCTTGTGAGCTATCTTAGAATATTTTTAGCCTAGAGAGTATTTTTTAGGTCTTTTCAAATGATTTCTCGAGTCAATAAGTAAGAACAAAGTTTTTGTAAAATGAAAGTTTGCAAAAAATCATTCGTCAAAAAAATTTGTGAACAAAWTTCTGAATTTTCAGAATGTTCTCAAGGGACCCTTATTTTTGATTTATAGAAACCTGACATTATGAGAAAACTTACTTGATATGGAAAAAGTGTGGAAGTGTTGACTTTGTCCCAGGCTTCAGCAATTGTTTTTTTCATGACCTCGAAAGAAGGTACTTTTCGTGTCCAGAACTGAAAATATGGAAATAGACGTTTTTAGAAGATAAGGCCCAGGAAATGTACATAAGTATAGCATAAGTACGGTGAATAAAGTTTACAAAAACGTATTTATCAGTTGATTTTCAGCCATTATCAGTAGTATGGAGCTCGGCTTCCAAGTTTCCTACGTTTGGAAATGTAAAACAGTGTTTGGAAATGTAAAACAGACCTAGACTGAAAACTTTGCATTCACAGAATTTTCTGAAAATGCCTAGTTTTTCAGTTATTTGTCGATCTCTATGAGACACCTGTATTTTCAACTTTTCGAAACGATAACAAAAAAGGAGCTCTTCCAAAACTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>388 174 172 107 61 28 23 18 13 9 7</canonical_bands>
                <polymorphic_bands>388 174 172 107 61 28 23 20 18 9</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>270 172 118 107 73 61 55 46 28 23 18 13 9 7</canonical_bands>
                <polymorphic_bands>270 172 118 107 73 61 55 46 28 23 20 18 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACAAAGTTTTTGTAAAATGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCCATATTTTCAGTTCTGGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAACAAAGTTTTTGTAAAATGAAAGTTTGCAAAAAATCATTCGTCAAAAAAATTTGTGAACAAAATTCTGAATTTTCAGAATGTTCTCAAGGGACCCTTATTTTTGATTTATAGAAACCTGACATTATGAGAAAACTTACTTGATATGGAAAAAGTGTGGAAGTGTTGACTTTGTCCCAGGCTTCAGCAATTGTTTTTTTCATGACCTCGAAAGAAGGTACTTTTCGTGTCCAGAACTGAAAATATGGAA</canonical_amplicon>
		<polymorphic_amplicon>GAACAAAGTTTTTGTAAAATGAAAGTTTGCAAAAAATCATTCGTCAAAAAAATTTGTGAACAAAWTTCTGAATTTTCAGAATGTTCTCAAGGGACCCTTATTTTTGATTTATAGAAACCTGACATTATGAGAAAACTTACTTGATATGGAAAAAGTGTGGAAGTGTTGACTTTGTCCCAGGCTTCAGCAATTGTTTTTTTCATGACCTCGAAAGAAGGTACTTTTCGTGTCCAGAACTGAAAATATGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6153</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97519</contig_pos>
        <strand>+</strand>
        <context>CTGATTCTCA[G/T]TACCCATGCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCA</left_flank>
        <right_flank>TACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGTCAATTTTAGTTTTTTTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAACAATTTGTCAACT</canonical>
            <polymorphic>CTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAKTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGTCAATTTTAGTTTTTTTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAACAATTTGTCAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 347 154</canonical_bands>
                <polymorphic_bands>846 154</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>496 391 113</canonical_bands>
                <polymorphic_bands>887 113</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATACCTCAAATGAAATGGTTC</pcr_primer_p1>
		<pcr_primer_p2>ATTAGTTTGAATTGAGTTGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAAT</canonical_amplicon>
		<polymorphic_amplicon>AATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAKTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6154</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97534</contig_pos>
        <strand>+</strand>
        <context>CATGCTGAAA[C/T]KTYTAGAYTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAA</left_flank>
        <right_flank>GTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGTCAATTTTAGTTTTTTTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAACAATTTGTCAACTGATAAATTGTTTATC</canonical>
            <polymorphic>AGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAAYGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGTCAATTTTAGTTTTTTTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAACAATTTGTCAACTGATAAATTGTTTATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>501 279 220</canonical_bands>
                <polymorphic_bands>721 279</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATACCTCAAATGAAATGGTTC</pcr_primer_p1>
		<pcr_primer_p2>ATTAGTTTGAATTGAGTTGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAAT</canonical_amplicon>
		<polymorphic_amplicon>AATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAAYGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6155</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97708</contig_pos>
        <strand>+</strand>
        <context>AAAAAAATGG[C/T]CCATTCTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGG</left_flank>
        <right_flank>CCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGTCAATTTTAGTTTTTTTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAACAATTTGTCAACTGATAAATTGTTTATCATAATATCACTAACATTTTATCAGTTGACATATTTTTGAAATCTTTTACGGGAACCGAGAAAAATAAACTCAAACTTGGCAGTGTAGATACCCTTCAATCACAGGTGGTAGATGTGAATTAATTTTTCATGTTTTTGGAAAACTTTCAAACTTATCCGTGATGACTTTAGGATC</canonical>
            <polymorphic>ATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGYCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGTCAATTTTAGTTTTTTTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAACAATTTGTCAACTGATAAATTGTTTATCATAATATCACTAACATTTTATCAGTTGACATATTTTTGAAATCTTTTACGGGAACCGAGAAAAATAAACTCAAACTTGGCAGTGTAGATACCCTTCAATCACAGGTGGTAGATGTGAATTAATTTTTCATGTTTTTGGAAAACTTTCAAACTTATCCGTGATGACTTTAGGATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATGATCGCTGTCTTTATGATT</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTAACTCGTGTTTCCTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>ATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGYCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6156</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97759</contig_pos>
        <strand>+</strand>
        <context>ATATGACAGC[C/T]ATCGTAAAMG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGC</left_flank>
        <right_flank>ATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGTCAATTTTAGTTTTTTTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAACAATTTGTCAACTGATAAATTGTTTATCATAATATCACTAACATTTTATCAGTTGACATATTTTTGAAATCTTTTACGGGAACCGAGAAAAATAAACTCAAACTTGGCAGTGTAGATACCCTTCAATCACAGGTGGTAGATGTGAATTAATTTTTCATGTTTTTGGAAAACTTTCAAACTTATCCGTGATGACTTTAGGATCTCAAAATTGACAATTCCAGGCTAAAAACAAGAGAATTTGACTTAAAAACTC</canonical>
            <polymorphic>TTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCYATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGTCAATTTTAGTTTTTTTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAACAATTTGTCAACTGATAAATTGTTTATCATAATATCACTAACATTTTATCAGTTGACATATTTTTGAAATCTTTTACGGGAACCGAGAAAAATAAACTCAAACTTGGCAGTGTAGATACCCTTCAATCACAGGTGGTAGATGTGAATTAATTTTTCATGTTTTTGGAAAACTTTCAAACTTATCCGTGATGACTTTAGGATCTCAAAATTGACAATTCCAGGCTAAAAACAAGAGAATTTGACTTAAAAACTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>498 286 216</canonical_bands>
                <polymorphic_bands>714 286</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>498 255 134 82 31</canonical_bands>
                <polymorphic_bands>580 255 134 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCACAACTCAATTCAAACTAAT</pcr_primer_p1>
		<pcr_primer_p2>TACTGAGGGAATGTGTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTA</canonical_amplicon>
		<polymorphic_amplicon>TCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCYATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6157</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97768</contig_pos>
        <strand>+</strand>
        <context>CYATCGTAAA[A/C]GTTTCGTTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAA</left_flank>
        <right_flank>GTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGTCAATTTTAGTTTTTTTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAACAATTTGTCAACTGATAAATTGTTTATCATAATATCACTAACATTTTATCAGTTGACATATTTTTGAAATCTTTTACGGGAACCGAGAAAAATAAACTCAAACTTGGCAGTGTAGATACCCTTCAATCACAGGTGGTAGATGTGAATTAATTTTTCATGTTTTTGGAAAACTTTCAAACTTATCCGTGATGACTTTAGGATCTCAAAATTGACAATTCCAGGCTAAAAACAAGAGAATTTGACTTAAAAACTCCAATATGAA</canonical>
            <polymorphic>TTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAMGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGTCAATTTTAGTTTTTTTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAACAATTTGTCAACTGATAAATTGTTTATCATAATATCACTAACATTTTATCAGTTGACATATTTTTGAAATCTTTTACGGGAACCGAGAAAAATAAACTCAAACTTGGCAGTGTAGATACCCTTCAATCACAGGTGGTAGATGTGAATTAATTTTTCATGTTTTTGGAAAACTTTCAAACTTATCCGTGATGACTTTAGGATCTCAAAATTGACAATTCCAGGCTAAAAACAAGAGAATTTGACTTAAAAACTCCAATATGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCACAACTCAATTCAAACTAAT</pcr_primer_p1>
		<pcr_primer_p2>TACTGAGGGAATGTGTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTA</canonical_amplicon>
		<polymorphic_amplicon>TCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAMGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6158</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97956</contig_pos>
        <strand></strand>
        <context>AACGATCACT[T/C]GAATCGtcca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTCAGTAGTCAATTTTAGTTTTTTTTTGTGGATGACTGGAAACGATCACT</left_flank>
        <right_flank>GAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGTCAATTTTAGTTTTTTTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAACAATTTGTCAACTGATAAATTGTTTATCATAATATCACTAACATTTTATCAGTTGACATATTTTTGAAATCTTTTACGGGAACCGAGAAAAATAAACTCAAACTTGGCAGTGTAGATACCCTTCAATCACAGGTGGTAGATGTGAATTAATTTTTCATGTTTTTGGAAAACTTTCAAACTTATCCGTGATGACTTTAGGATCTCAAAATTGACAATTCCAGGCTAAAAACAAGAGAATTTGACTTAAAAACTCCAATATGAAACTATGTGAGTTGAGCATATTGAACAAAATTTCGGTCTCAAAAAAAAATTAATTTACCTTATTTCCTCTAATAGAAGACCACTCAAATCGGAAACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAAATTTGTAAACTAATAAATTGTTTATCATATATCAAAAATATTTCATCAGTTG</canonical>
            <polymorphic>TGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGTCAATTTTAGTTTTTTTTTGTGGATGACTGGAAACGATCACTYGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAACAATTTGTCAACTGATAAATTGTTTATCATAATATCACTAACATTTTATCAGTTGACATATTTTTGAAATCTTTTACGGGAACCGAGAAAAATAAACTCAAACTTGGCAGTGTAGATACCCTTCAATCACAGGTGGTAGATGTGAATTAATTTTTCATGTTTTTGGAAAACTTTCAAACTTATCCGTGATGACTTTAGGATCTCAAAATTGACAATTCCAGGCTAAAAACAAGAGAATTTGACTTAAAAACTCCAATATGAAACTATGTGAGTTGAGCATATTGAACAAAATTTCGGTCTCAAAAAAAAATTAATTTACCTTATTTCCTCTAATAGAAGACCACTCAAATCGGAAACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAAATTTGTAAACTAATAAATTGTTTATCATATATCAAAAATATTTCATCAGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACATTCCCTCAGTAGTCAA</pcr_primer_p1>
		<pcr_primer_p2>CATGAAAAATTAATTCACATCTACC</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>ACACATTCCCTCAGTAGTCAATTTTAGTTTTTTTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAACAATTTGTCAACTGATAAATTGTTTATCATAATATCACTAACATTTTATCAGTTGACATATTTTTGAAATCTTTTACGGGAACCGAGAAAAATAAACTCAAACTTGGCAGTGTAGATACCCTTCAATCACAGGTGGTAGATGTGAATTAATTTTTCATG</canonical_amplicon>
		<polymorphic_amplicon>ACACATTCCCTCAGTAGTCAATTTTAGTTTTTTTTTGTGGATGACTGGAAACGATCACTYGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAACAATTTGTCAACTGATAAATTGTTTATCATAATATCACTAACATTTTATCAGTTGACATATTTTTGAAATCTTTTACGGGAACCGAGAAAAATAAACTCAAACTTGGCAGTGTAGATACCCTTCAATCACAGGTGGTAGATGTGAATTAATTTTTCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6159</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>100833</contig_pos>
        <strand>+</strand>
        <context>AAAGTTCTGA[C/T]AGGTTCAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAGATCATAGAAATTCGAAAAAAAGCCCCTTGAAAATTCAAAGTTCTGA</left_flank>
        <right_flank>AGGTTCAAAAATTCTGGAGATCTTTTGTTATGGATTTTTTAACATGAGAT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTCTGAAAAAAAAGAAAACAGAGAAATCTCTTTTCTCTTTTTTTCCATATAATCACTTTCCACTTTCCACCTCAAAAACCCAACCATTATCATCGGGAATCGAGAAAATCGACTCCATTTTTCTCGATTTTGGGGTTTTTTCCGGTTTTTTGAAGATTTTTGTTGAGAGGTAAATTTTCTTTTTCGATCAGTGATCATGGAAGTTTTCCTAGCTAATCCAAAGAGAGCTTTTCTGGAAACTCCAGCTTTACTAGAAAATTCATTTGCTAGTCAGATAAGGGGCTGGATTTTGTCATTTATTGTTAGATTTGAGATCCAAAAACTTTGAAACTTTGAATTGAAACATTTTATAAATTCAAGTTGTTGTTAGGTACTCAATTACGCTGGCCAGTTAAAAAGCATTCTTCTCCTGAAATTCAAGAAAATCTGAAGTTTCTTATAGAAATCATAGATCATAGAAATTCGAAAAAAAGCCCCTTGAAAATTCAAAGTTCTGATAGGTTCAAAAATTCTGGAGATCTTTTGTTATGGATTTTTTAACATGAGATCCAAACAGTTTTTTTTGGATTTCAAAGTTTTGAAGGAAAAAATTTGAAAATCCAAACAAAAGTTTAAAATTTTGTAGTTTTCGTGAACATAAAATACCGTAAAACCTGTAATAGAAGGGTTCCCAATACACTGTCAAGCTTGAGCTCAATTATCTTGGTTCCTGTAAAATATATCAAAAAGTGGTCTGATAAAATTTTTGGGATAATATAATGAACATTTTATCAGTGGACACCTTTTTGATTTCTTTTAATGAAACGGAGAAAAATTGGCTCAAAGTTAGGGGACCTATTAGAGGTTTTACGATATTTCAAAAGAAAAAATATTTTTGAAATTTGATAGTTCTCAAATTAGGATCTATCAAACTACAAAAAGTTTTAGATTTTGAAAAATCCGGTAGTTAGAAAATTCAAAACTATGAAAGCTAAGATTAAGATTCTAAGATTCTGAGA</canonical>
            <polymorphic>TTCTCTGAAAAAAAAGAAAACAGAGAAATCTCTTTTCTCTTTTTTTCCATATAATCACTTTCCACTTTCCACCTCAAAAACCCAACCATTATCATCGGGAATCGAGAAAATCGACTCCATTTTTCTCGATTTTGGGGTTTTTTCCGGTTTTTTGAAGATTTTTGTTGAGAGGTAAATTTTCTTTTTCGATCAGTGATCATGGAAGTTTTCCTAGCTAATCCAAAGAGAGCTTTTCTGGAAACTCCAGCTTTACTAGAAAATTCATTTGCTAGTCAGATAAGGGGCTGGATTTTGTCATTTATTGTTAGATTTGAGATCCAAAAACTTTGAAACTTTGAATTGAAACATTTTATAAATTCAAGTTGTTGTTAGGTACTCAATTACGCTGGCCAGTTAAAAAGCATTCTTCTCCTGAAATTCAAGAAAATCTGAAGTTTCTTATAGAAATCATAGATCATAGAAATTCGAAAAAAAGCCCCTTGAAAATTCAAAGTTCTGAYAGGTTCAAAAATTCTGGAGATCTTTTGTTATGGATTTTTTAACATGAGATCCAAACAGTTTTTTTTGGATTTCAAAGTTTTGAAGGAAAAAATTTGAAAATCCAAACAAAAGTTTAAAATTTTGTAGTTTTCGTGAACATAAAATACCGTAAAACCTGTAATAGAAGGGTTCCCAATACACTGTCAAGCTTGAGCTCAATTATCTTGGTTCCTGTAAAATATATCAAAAAGTGGTCTGATAAAATTTTTGGGATAATATAATGAACATTTTATCAGTGGACACCTTTTTGATTTCTTTTAATGAAACGGAGAAAAATTGGCTCAAAGTTAGGGGACCTATTAGAGGTTTTACGATATTTCAAAAGAAAAAATATTTTTGAAATTTGATAGTTCTCAAATTAGGATCTATCAAACTACAAAAAGTTTTAGATTTTGAAAAATCCGGTAGTTAGAAAATTCAAAACTATGAAAGCTAAGATTAAGATTCTAAGATTCTGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGTTGTTAGGTACTCAATTACG</pcr_primer_p1>
		<pcr_primer_p2>TTAAACTTTTGTTTGGATTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>GTTGTTGTTAGGTACTCAATTACGCTGGCCAGTTAAAAAGCATTCTTCTCCTGAAATTCAAGAAAATCTGAAGTTTCTTATAGAAATCATAGATCATAGAAATTCGAAAAAAAGCCCCTTGAAAATTCAAAGTTCTGATAGGTTCAAAAATTCTGGAGATCTTTTGTTATGGATTTTTTAACATGAGATCCAAACAGTTTTTTTTGGATTTCAAAGTTTTGAAGGAAAAAATTTGAAAATCCAAACAAAAGTTTAA</canonical_amplicon>
		<polymorphic_amplicon>GTTGTTGTTAGGTACTCAATTACGCTGGCCAGTTAAAAAGCATTCTTCTCCTGAAATTCAAGAAAATCTGAAGTTTCTTATAGAAATCATAGATCATAGAAATTCGAAAAAAAGCCCCTTGAAAATTCAAAGTTCTGAYAGGTTCAAAAATTCTGGAGATCTTTTGTTATGGATTTTTTAACATGAGATCCAAACAGTTTTTTTTGGATTTCAAAGTTTTGAAGGAAAAAATTTGAAAATCCAAACAAAAGTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6160</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>100670</contig_pos>
        <strand>+</strand>
        <context>TTGAAACTTT[A/G]AATTGAAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGATTTTGTCATTTATTGTTAGATTTGAGATCCAAAAACTTTGAAACTTT</left_flank>
        <right_flank>AATTGAAACATTTTATAAATTCAAGTTGTTGTTAGGTACTCAATTACGCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACACTATTTTTGCCTTCAATTACATCTGCCAATCAAGGCTCCACAAAACCACAAAACCTCAATCTTTTTTCTTTCTTTCTTTTCCACCTTCATTTCATTTTCCCTTCCCCCTTGTGTGTGCTGTTTTTATATTTTTCCTGTTTTCCGCTTATCCCAGAGCATTCTCTGAAAAAAAAGAAAACAGAGAAATCTCTTTTCTCTTTTTTTCCATATAATCACTTTCCACTTTCCACCTCAAAAACCCAACCATTATCATCGGGAATCGAGAAAATCGACTCCATTTTTCTCGATTTTGGGGTTTTTTCCGGTTTTTTGAAGATTTTTGTTGAGAGGTAAATTTTCTTTTTCGATCAGTGATCATGGAAGTTTTCCTAGCTAATCCAAAGAGAGCTTTTCTGGAAACTCCAGCTTTACTAGAAAATTCATTTGCTAGTCAGATAAGGGGCTGGATTTTGTCATTTATTGTTAGATTTGAGATCCAAAAACTTTGAAACTTTGAATTGAAACATTTTATAAATTCAAGTTGTTGTTAGGTACTCAATTACGCTGGCCAGTTAAAAAGCATTCTTCTCCTGAAATTCAAGAAAATCTGAAGTTTCTTATAGAAATCATAGATCATAGAAATTCGAAAAAAAGCCCCTTGAAAATTCAAAGTTCTGATAGGTTCAAAAATTCTGGAGATCTTTTGTTATGGATTTTTTAACATGAGATCCAAACAGTTTTTTTTGGATTTCAAAGTTTTGAAGGAAAAAATTTGAAAATCCAAACAAAAGTTTAAAATTTTGTAGTTTTCGTGAACATAAAATACCGTAAAACCTGTAATAGAAGGGTTCCCAATACACTGTCAAGCTTGAGCTCAATTATCTTGGTTCCTGTAAAATATATCAAAAAGTGGTCTGATAAAATTTTTGGGATAATATAATGAACATTTTATCAGTGGACACCTTTTTGATTTCTTTTAATGAAACGGAGAAAAATTGGCTCAAAGTTAGGGGACC</canonical>
            <polymorphic>CCACACTATTTTTGCCTTCAATTACATCTGCCAATCAAGGCTCCACAAAACCACAAAACCTCAATCTTTTTTCTTTCTTTCTTTTCCACCTTCATTTCATTTTCCCTTCCCCCTTGTGTGTGCTGTTTTTATATTTTTCCTGTTTTCCGCTTATCCCAGAGCATTCTCTGAAAAAAAAGAAAACAGAGAAATCTCTTTTCTCTTTTTTTCCATATAATCACTTTCCACTTTCCACCTCAAAAACCCAACCATTATCATCGGGAATCGAGAAAATCGACTCCATTTTTCTCGATTTTGGGGTTTTTTCCGGTTTTTTGAAGATTTTTGTTGAGAGGTAAATTTTCTTTTTCGATCAGTGATCATGGAAGTTTTCCTAGCTAATCCAAAGAGAGCTTTTCTGGAAACTCCAGCTTTACTAGAAAATTCATTTGCTAGTCAGATAAGGGGCTGGATTTTGTCATTTATTGTTAGATTTGAGATCCAAAAACTTTGAAACTTTRAATTGAAACATTTTATAAATTCAAGTTGTTGTTAGGTACTCAATTACGCTGGCCAGTTAAAAAGCATTCTTCTCCTGAAATTCAAGAAAATCTGAAGTTTCTTATAGAAATCATAGATCATAGAAATTCGAAAAAAAGCCCCTTGAAAATTCAAAGTTCTGATAGGTTCAAAAATTCTGGAGATCTTTTGTTATGGATTTTTTAACATGAGATCCAAACAGTTTTTTTTGGATTTCAAAGTTTTGAAGGAAAAAATTTGAAAATCCAAACAAAAGTTTAAAATTTTGTAGTTTTCGTGAACATAAAATACCGTAAAACCTGTAATAGAAGGGTTCCCAATACACTGTCAAGCTTGAGCTCAATTATCTTGGTTCCTGTAAAATATATCAAAAAGTGGTCTGATAAAATTTTTGGGATAATATAATGAACATTTTATCAGTGGACACCTTTTTGATTTCTTTTAATGAAACGGAGAAAAATTGGCTCAAAGTTAGGGGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATTTTCTTTTTCGATCAGTG</pcr_primer_p1>
		<pcr_primer_p2>CTTGAATTTCAGGAGAAGAATG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAAATTTTCTTTTTCGATCAGTGATCATGGAAGTTTTCCTAGCTAATCCAAAGAGAGCTTTTCTGGAAACTCCAGCTTTACTAGAAAATTCATTTGCTAGTCAGATAAGGGGCTGGATTTTGTCATTTATTGTTAGATTTGAGATCCAAAAACTTTGAAACTTTGAATTGAAACATTTTATAAATTCAAGTTGTTGTTAGGTACTCAATTACGCTGGCCAGTTAAAAAGCATTCTTCTCCTGAAATTCAAG</canonical_amplicon>
		<polymorphic_amplicon>TAAATTTTCTTTTTCGATCAGTGATCATGGAAGTTTTCCTAGCTAATCCAAAGAGAGCTTTTCTGGAAACTCCAGCTTTACTAGAAAATTCATTTGCTAGTCAGATAAGGGGCTGGATTTTGTCATTTATTGTTAGATTTGAGATCCAAAAACTTTGAAACTTTRAATTGAAACATTTTATAAATTCAAGTTGTTGTTAGGTACTCAATTACGCTGGCCAGTTAAAAAGCATTCTTCTCCTGAAATTCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6162</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>103360</contig_pos>
        <strand>+</strand>
        <context>CTCGGGATCC[A/G]GACGACAGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGCATGATTTTCTCCTAACAACAGGATGTTCTGATTGACCTCGGGATCC</left_flank>
        <right_flank>GACGACAGGAGCCTCCACACTGCTAAGTTTGAGCTCAATTGTCTCGGTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGTTCCACTAGAATAAATTAAATGGTTCAAAAATATTCTCGGTATACCAAATTTAATCTTTCTCCCCACCGATTTTCTCTGTGTTTTTGTTTTTTCTTGTTCTCAACAAAAAAAAGACACAACGTCAGAAAGCTGGCCTCTCATTTCTTTCACTTCTAAATGAATCACCCCTTCATTTTTTTTCTCAAAAAACTTCTTCTTTTTGAGCTTCTTCTCCTTCTTCTTCTTCCAACGATTTTTCCCTTCCCACACAAATGTTTGTATAATTGAGCAGAGGGTGGAGAAGGGAGAGGGAAAACTCATTCAGAAAACACTTCCGCTCCCCGAGAAAAAATGTCTGGACTTGGCTACCCAACAAAATTTGTATTCTTTTGAATATAAATTGTTTTCTTTTGAGCAGTTTGGGAACATTTGTACTTTTCCTGTTGTTTGTATTTTTGAGGGACTCCGCATGATTTTCTCCTAACAACAGGATGTTCTGATTGACCTCGGGATCCAGACGACAGGAGCCTCCACACTGCTAAGTTTGAGCTCAATTGTCTCGGTTCCTGTAAAAGATGTCAAGAATCTGTCAACTGATAAAATGTTTGTGACATTATGATAAACAATTTATCAGTTTTTAACTTTTTGATATCTTTTACAGGAAACGAGATAAATTGGCTCAAAGTACAAACTTATCTTTTAGCGGTATCACTGTAGATATCATAAGTTCGAACTCAATTATCTCGGCTCCTATGCAAGATATCGAAAATGTGTCAACTGATAAAACATTTATCTTATCATGATAAACATTTTATTAGTTGACAACGTTTTCATATCTTTCACAGGAACCGAAATATCTGGCTCAAAGTTAGTAGGTGATCCTTAAAGGTACCTCGGGCTCCAAATAATTATTTATGTTTCAAAAATAGTTTCTTCCACTAAATTACTGTTAACCGGAATCCAAGAACTAAATATTTTTCATATTTTCAGTGTTTTCTGAACTTTTTCGAATTCAA</canonical>
            <polymorphic>CTTGTTCCACTAGAATAAATTAAATGGTTCAAAAATATTCTCGGTATACCAAATTTAATCTTTCTCCCCACCGATTTTCTCTGTGTTTTTGTTTTTTCTTGTTCTCAACAAAAAAAAGACACAACGTCAGAAAGCTGGCCTCTCATTTCTTTCACTTCTAAATGAATCACCCCTTCATTTTTTTTCTCAAAAAACTTCTTCTTTTTGAGCTTCTTCTCCTTCTTCTTCTTCCAACGATTTTTCCCTTCCCACACAAATGTTTGTATAATTGAGCAGAGGGTGGAGAAGGGAGAGGGAAAACTCATTCAGAAAACACTTCCGCTCCCCGAGAAAAAATGTCTGGACTTGGCTACCCAACAAAATTTGTATTCTTTTGAATATAAATTGTTTTCTTTTGAGCAGTTTGGGAACATTTGTACTTTTCCTGTTGTTTGTATTTTTGAGGGACTCCGCATGATTTTCTCCTAACAACAGGATGTTCTGATTGACCTCGGGATCCRGACGACAGGAGCCTCCACACTGCTAAGTTTGAGCTCAATTGTCTCGGTTCCTGTAAAAGATGTCAAGAATCTGTCAACTGATAAAATGTTTGTGACATTATGATAAACAATTTATCAGTTTTTAACTTTTTGATATCTTTTACAGGAAACGAGATAAATTGGCTCAAAGTACAAACTTATCTTTTAGCGGTATCACTGTAGATATCATAAGTTCGAACTCAATTATCTCGGCTCCTATGCAAGATATCGAAAATGTGTCAACTGATAAAACATTTATCTTATCATGATAAACATTTTATTAGTTGACAACGTTTTCATATCTTTCACAGGAACCGAAATATCTGGCTCAAAGTTAGTAGGTGATCCTTAAAGGTACCTCGGGCTCCAAATAATTATTTATGTTTCAAAAATAGTTTCTTCCACTAAATTACTGTTAACCGGAATCCAAGAACTAAATATTTTTCATATTTTCAGTGTTTTCTGAACTTTTTCGAATTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTGTATTTTTGAGGGACTC</pcr_primer_p1>
		<pcr_primer_p2>AGTGGAAGAAACTATTTTTGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>496</pcr_amplicon_size>
		<canonical_amplicon>TGTTTGTATTTTTGAGGGACTCCGCATGATTTTCTCCTAACAACAGGATGTTCTGATTGACCTCGGGATCCAGACGACAGGAGCCTCCACACTGCTAAGTTTGAGCTCAATTGTCTCGGTTCCTGTAAAAGATGTCAAGAATCTGTCAACTGATAAAATGTTTGTGACATTATGATAAACAATTTATCAGTTTTTAACTTTTTGATATCTTTTACAGGAAACGAGATAAATTGGCTCAAAGTACAAACTTATCTTTTAGCGGTATCACTGTAGATATCATAAGTTCGAACTCAATTATCTCGGCTCCTATGCAAGATATCGAAAATGTGTCAACTGATAAAACATTTATCTTATCATGATAAACATTTTATTAGTTGACAACGTTTTCATATCTTTCACAGGAACCGAAATATCTGGCTCAAAGTTAGTAGGTGATCCTTAAAGGTACCTCGGGCTCCAAATAATTATTTATGTTTCAAAAATAGTTTCTTCCACT</canonical_amplicon>
		<polymorphic_amplicon>TGTTTGTATTTTTGAGGGACTCCGCATGATTTTCTCCTAACAACAGGATGTTCTGATTGACCTCGGGATCCRGACGACAGGAGCCTCCACACTGCTAAGTTTGAGCTCAATTGTCTCGGTTCCTGTAAAAGATGTCAAGAATCTGTCAACTGATAAAATGTTTGTGACATTATGATAAACAATTTATCAGTTTTTAACTTTTTGATATCTTTTACAGGAAACGAGATAAATTGGCTCAAAGTACAAACTTATCTTTTAGCGGTATCACTGTAGATATCATAAGTTCGAACTCAATTATCTCGGCTCCTATGCAAGATATCGAAAATGTGTCAACTGATAAAACATTTATCTTATCATGATAAACATTTTATTAGTTGACAACGTTTTCATATCTTTCACAGGAACCGAAATATCTGGCTCAAAGTTAGTAGGTGATCCTTAAAGGTACCTCGGGCTCCAAATAATTATTTATGTTTCAAAAATAGTTTCTTCCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6163</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>105507</contig_pos>
        <strand></strand>
        <context>ACTTTTCGAA[C/T]AGAGGAAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAAGTCAATTTCCATTTTTAGAAAAAAAAATTCTGCAAACTTTTCGAA</left_flank>
        <right_flank>AGAGGAAATTAAAATGGATTTTTTTGGTTGACAAAAAAGTGTGGGCGAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTGGAATCTTAGAATTTTAGAATCTTAGATTCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCTGAAGTTGTTTGTTAAATTTTTTTTACGATTTTCTTATTTTTTAATTTTCCAAGAATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTTTGCAAAAAACTTCCTTCAAATGTCCATCTGTCACCCATCCCTCAGGATCCCCATGAATTCTTCGTTCCATTTTTTTTTCCGAAAAAATTTCTTGCTGACATTTTAACGACAACATCTCATCCGTCCCATTCACACCCCTTTGAATTCCCAAAAAATTCTGAAAGTCAATTTCCATTTTTAGAAAAAAAAATTCTGCAAACTTTTCGAACAGAGGAAATTAAAATGGATTTTTTTGGTTGACAAAAAAGTGTGGGCGAAAAAATATAAGCGAAATCTGATGACTTTTTGGAGTTGAGAGAAATAGAGAAGTGCGTCAGTAGCCAGTGGTGACGCAGAAAAATACTACAAACAGAGATATAGATTCTTTGTGATTTTAGTGTACAAAAATAGGTACTGAAATCGAATTTTGAAAACCTGGTTTTTGCGAATTTCAGATTTTGAGATTTTAAAAATGTGAGTTCTAAAATTCCAAGATTCTTGAATTCTGGGATTCGGGGATTATAAGATTCTATGATGTTAAGGTCCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTC</canonical>
            <polymorphic>TCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTGGAATCTTAGAATTTTAGAATCTTAGATTCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCTGAAGTTGTTTGTTAAATTTTTTTTACGATTTTCTTATTTTTTAATTTTCCAAGAATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTTTGCAAAAAACTTCCTTCAAATGTCCATCTGTCACCCATCCCTCAGGATCCCCATGAATTCTTCGTTCCATTTTTTTTTCCGAAAAAATTTCTTGCTGACATTTTAACGACAACATCTCATCCGTCCCATTCACACCCCTTTGAATTCCCAAAAAATTCTGAAAGTCAATTTCCATTTTTAGAAAAAAAAATTCTGCAAACTTTTCGAAYAGAGGAAATTAAAATGGATTTTTTTGGTTGACAAAAAAGTGTGGGCGAAAAAATATAAGCGAAATCTGATGACTTTTTGGAGTTGAGAGAAATAGAGAAGTGCGTCAGTAGCCAGTGGTGACGCAGAAAAATACTACAAACAGAGATATAGATTCTTTGTGATTTTAGTGTACAAAAATAGGTACTGAAATCGAATTTTGAAAACCTGGTTTTTGCGAATTTCAGATTTTGAGATTTTAAAAATGTGAGTTCTAAAATTCCAAGATTCTTGAATTCTGGGATTCGGGGATTATAAGATTCTATGATGTTAAGGTCCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGAAAGTCAATTTCCATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCGATTTCAGTACCTATTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTGAAAGTCAATTTCCATTTTTAGAAAAAAAAATTCTGCAAACTTTTCGAACAGAGGAAATTAAAATGGATTTTTTTGGTTGACAAAAAAGTGTGGGCGAAAAAATATAAGCGAAATCTGATGACTTTTTGGAGTTGAGAGAAATAGAGAAGTGCGTCAGTAGCCAGTGGTGACGCAGAAAAATACTACAAACAGAGATATAGATTCTTTGTGATTTTAGTGTACAAAAATAGGTACTGAAATCGAA</canonical_amplicon>
		<polymorphic_amplicon>TCTGAAAGTCAATTTCCATTTTTAGAAAAAAAAATTCTGCAAACTTTTCGAAYAGAGGAAATTAAAATGGATTTTTTTGGTTGACAAAAAAGTGTGGGCGAAAAAATATAAGCGAAATCTGATGACTTTTTGGAGTTGAGAGAAATAGAGAAGTGCGTCAGTAGCCAGTGGTGACGCAGAAAAATACTACAAACAGAGATATAGATTCTTTGTGATTTTAGTGTACAAAAATAGGTACTGAAATCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6164</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>105325</contig_pos>
        <strand>+</strand>
        <context>CAAATGTCCA[A/T]CTGTCACCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTTCTTTTTTTTTCCAAGAATTTTGCAAAAAACTTCCTTCAAATGTCCA</left_flank>
        <right_flank>CTGTCACCCATCCCTCAGGATCCCCATGAATTCTTCGTTCCATTTTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCTAAACATAAGTTTTCCCACCTTCATTATTTTGGGTCTTATGAAAGTTTTATCAGCTGCGATGAAAATAGAAAATCGGAAAAAAAACGAGGATGGAATTTTTCATAGAGACGAATTCAGATTATCAGGATCTTTTGGATCTTAGAATCTTAGAATCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTGGAATCTTAGAATTTTAGAATCTTAGATTCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCTGAAGTTGTTTGTTAAATTTTTTTTACGATTTTCTTATTTTTTAATTTTCCAAGAATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTTTGCAAAAAACTTCCTTCAAATGTCCATCTGTCACCCATCCCTCAGGATCCCCATGAATTCTTCGTTCCATTTTTTTTTCCGAAAAAATTTCTTGCTGACATTTTAACGACAACATCTCATCCGTCCCATTCACACCCCTTTGAATTCCCAAAAAATTCTGAAAGTCAATTTCCATTTTTAGAAAAAAAAATTCTGCAAACTTTTCGAACAGAGGAAATTAAAATGGATTTTTTTGGTTGACAAAAAAGTGTGGGCGAAAAAATATAAGCGAAATCTGATGACTTTTTGGAGTTGAGAGAAATAGAGAAGTGCGTCAGTAGCCAGTGGTGACGCAGAAAAATACTACAAACAGAGATATAGATTCTTTGTGATTTTAGTGTACAAAAATAGGTACTGAAATCGAATTTTGAAAACCTGGTTTTTGCGAATTTCAGATTTTGAGATTTTAAAAATGTGAGTTCTAAAATTCCAAGATTCTTGAATTCTGGGATTCGGGGATTATAAGATTCTATGATGTTAAGGTCCTG</canonical>
            <polymorphic>ATTTCTAAACATAAGTTTTCCCACCTTCATTATTTTGGGTCTTATGAAAGTTTTATCAGCTGCGATGAAAATAGAAAATCGGAAAAAAAACGAGGATGGAATTTTTCATAGAGACGAATTCAGATTATCAGGATCTTTTGGATCTTAGAATCTTAGAATCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTGGAATCTTAGAATTTTAGAATCTTAGATTCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCTGAAGTTGTTTGTTAAATTTTTTTTACGATTTTCTTATTTTTTAATTTTCCAAGAATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTTTGCAAAAAACTTCCTTCAAATGTCCAWCTGTCACCCATCCCTCAGGATCCCCATGAATTCTTCGTTCCATTTTTTTTTCCGAAAAAATTTCTTGCTGACATTTTAACGACAACATCTCATCCGTCCCATTCACACCCCTTTGAATTCCCAAAAAATTCTGAAAGTCAATTTCCATTTTTAGAAAAAAAAATTCTGCAAACTTTTCGAACAGAGGAAATTAAAATGGATTTTTTTGGTTGACAAAAAAGTGTGGGCGAAAAAATATAAGCGAAATCTGATGACTTTTTGGAGTTGAGAGAAATAGAGAAGTGCGTCAGTAGCCAGTGGTGACGCAGAAAAATACTACAAACAGAGATATAGATTCTTTGTGATTTTAGTGTACAAAAATAGGTACTGAAATCGAATTTTGAAAACCTGGTTTTTGCGAATTTCAGATTTTGAGATTTTAAAAATGTGAGTTCTAAAATTCCAAGATTCTTGAATTCTGGGATTCGGGGATTATAAGATTCTATGATGTTAAGGTCCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCATAGAGACGAATTCAGATT</pcr_primer_p1>
		<pcr_primer_p2>CGTTAAAATGTCAGCAAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>478</pcr_amplicon_size>
		<canonical_amplicon>TTTCATAGAGACGAATTCAGATTATCAGGATCTTTTGGATCTTAGAATCTTAGAATCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTGGAATCTTAGAATTTTAGAATCTTAGATTCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCTGAAGTTGTTTGTTAAATTTTTTTTACGATTTTCTTATTTTTTAATTTTCCAAGAATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTTTGCAAAAAACTTCCTTCAAATGTCCATCTGTCACCCATCCCTCAGGATCCCCATGAATTCTTCGTTCCATTTTTTTTTCCGAAAAAATTTCTTGCTGACATTTTAACG</canonical_amplicon>
		<polymorphic_amplicon>TTTCATAGAGACGAATTCAGATTATCAGGATCTTTTGGATCTTAGAATCTTAGAATCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTGGAATCTTAGAATTTTAGAATCTTAGATTCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCTGAAGTTGTTTGTTAAATTTTTTTTACGATTTTCTTATTTTTTAATTTTCCAAGAATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTTTGCAAAAAACTTCCTTCAAATGTCCAWCTGTCACCCATCCCTCAGGATCCCCATGAATTCTTCGTTCCATTTTTTTTTCCGAAAAAATTTCTTGCTGACATTTTAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6165</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>105300</contig_pos>
        <strand></strand>
        <context>CAAGAATTTT[G/C]CAAAAAACTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>ATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTTT</left_flank>
        <right_flank>CAAAAAACTTCCTTCAAATGTCCATCTGTCACCCATCCCTCAGGATCCCC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCCTCTTTTGTTGAATCCATAATATTTCTAAACATAAGTTTTCCCACCTTCATTATTTTGGGTCTTATGAAAGTTTTATCAGCTGCGATGAAAATAGAAAATCGGAAAAAAAACGAGGATGGAATTTTTCATAGAGACGAATTCAGATTATCAGGATCTTTTGGATCTTAGAATCTTAGAATCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTGGAATCTTAGAATTTTAGAATCTTAGATTCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCTGAAGTTGTTTGTTAAATTTTTTTTACGATTTTCTTATTTTTTAATTTTCCAAGAATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTTTGCAAAAAACTTCCTTCAAATGTCCATCTGTCACCCATCCCTCAGGATCCCCATGAATTCTTCGTTCCATTTTTTTTTCCGAAAAAATTTCTTGCTGACATTTTAACGACAACATCTCATCCGTCCCATTCACACCCCTTTGAATTCCCAAAAAATTCTGAAAGTCAATTTCCATTTTTAGAAAAAAAAATTCTGCAAACTTTTCGAACAGAGGAAATTAAAATGGATTTTTTTGGTTGACAAAAAAGTGTGGGCGAAAAAATATAAGCGAAATCTGATGACTTTTTGGAGTTGAGAGAAATAGAGAAGTGCGTCAGTAGCCAGTGGTGACGCAGAAAAATACTACAAACAGAGATATAGATTCTTTGTGATTTTAGTGTACAAAAATAGGTACTGAAATCGAATTTTGAAAACCTGGTTTTTGCGAATTTCAGATTTTGAGATTTTAAAAATGTGAGTTCTAAAATTCCAAGATTCTTGAATTCTGGGATTCGGGGATTAT</canonical>
            <polymorphic>TTTCCTCTTTTGTTGAATCCATAATATTTCTAAACATAAGTTTTCCCACCTTCATTATTTTGGGTCTTATGAAAGTTTTATCAGCTGCGATGAAAATAGAAAATCGGAAAAAAAACGAGGATGGAATTTTTCATAGAGACGAATTCAGATTATCAGGATCTTTTGGATCTTAGAATCTTAGAATCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTGGAATCTTAGAATTTTAGAATCTTAGATTCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCTGAAGTTGTTTGTTAAATTTTTTTTACGATTTTCTTATTTTTTAATTTTCCAAGAATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTTTSCAAAAAACTTCCTTCAAATGTCCATCTGTCACCCATCCCTCAGGATCCCCATGAATTCTTCGTTCCATTTTTTTTTCCGAAAAAATTTCTTGCTGACATTTTAACGACAACATCTCATCCGTCCCATTCACACCCCTTTGAATTCCCAAAAAATTCTGAAAGTCAATTTCCATTTTTAGAAAAAAAAATTCTGCAAACTTTTCGAACAGAGGAAATTAAAATGGATTTTTTTGGTTGACAAAAAAGTGTGGGCGAAAAAATATAAGCGAAATCTGATGACTTTTTGGAGTTGAGAGAAATAGAGAAGTGCGTCAGTAGCCAGTGGTGACGCAGAAAAATACTACAAACAGAGATATAGATTCTTTGTGATTTTAGTGTACAAAAATAGGTACTGAAATCGAATTTTGAAAACCTGGTTTTTGCGAATTTCAGATTTTGAGATTTTAAAAATGTGAGTTCTAAAATTCCAAGATTCTTGAATTCTGGGATTCGGGGATTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 307 193</canonical_bands>
                <polymorphic_bands>693 307</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCATAGAGACGAATTCAGATT</pcr_primer_p1>
		<pcr_primer_p2>CGTTAAAATGTCAGCAAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>478</pcr_amplicon_size>
		<canonical_amplicon>TTTCATAGAGACGAATTCAGATTATCAGGATCTTTTGGATCTTAGAATCTTAGAATCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTGGAATCTTAGAATTTTAGAATCTTAGATTCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCTGAAGTTGTTTGTTAAATTTTTTTTACGATTTTCTTATTTTTTAATTTTCCAAGAATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTTTGCAAAAAACTTCCTTCAAATGTCCATCTGTCACCCATCCCTCAGGATCCCCATGAATTCTTCGTTCCATTTTTTTTTCCGAAAAAATTTCTTGCTGACATTTTAACG</canonical_amplicon>
		<polymorphic_amplicon>TTTCATAGAGACGAATTCAGATTATCAGGATCTTTTGGATCTTAGAATCTTAGAATCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTGGAATCTTAGAATTTTAGAATCTTAGATTCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCTGAAGTTGTTTGTTAAATTTTTTTTACGATTTTCTTATTTTTTAATTTTCCAAGAATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTTTSCAAAAAACTTCCTTCAAATGTCCATCTGTCACCCATCCCTCAGGATCCCCATGAATTCTTCGTTCCATTTTTTTTTCCGAAAAAATTTCTTGCTGACATTTTAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6166</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>105289</contig_pos>
        <strand></strand>
        <context>CTTTTTTTTT[C/G]CAAGAATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTTTCCAAGAATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTT</left_flank>
        <right_flank>CAAGAATTTTGCAAAAAACTTCCTTCAAATGTCCATCTGTCACCCATCCC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGAGGATTTTTCCTCTTTTGTTGAATCCATAATATTTCTAAACATAAGTTTTCCCACCTTCATTATTTTGGGTCTTATGAAAGTTTTATCAGCTGCGATGAAAATAGAAAATCGGAAAAAAAACGAGGATGGAATTTTTCATAGAGACGAATTCAGATTATCAGGATCTTTTGGATCTTAGAATCTTAGAATCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTGGAATCTTAGAATTTTAGAATCTTAGATTCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCTGAAGTTGTTTGTTAAATTTTTTTTACGATTTTCTTATTTTTTAATTTTCCAAGAATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTTTGCAAAAAACTTCCTTCAAATGTCCATCTGTCACCCATCCCTCAGGATCCCCATGAATTCTTCGTTCCATTTTTTTTTCCGAAAAAATTTCTTGCTGACATTTTAACGACAACATCTCATCCGTCCCATTCACACCCCTTTGAATTCCCAAAAAATTCTGAAAGTCAATTTCCATTTTTAGAAAAAAAAATTCTGCAAACTTTTCGAACAGAGGAAATTAAAATGGATTTTTTTGGTTGACAAAAAAGTGTGGGCGAAAAAATATAAGCGAAATCTGATGACTTTTTGGAGTTGAGAGAAATAGAGAAGTGCGTCAGTAGCCAGTGGTGACGCAGAAAAATACTACAAACAGAGATATAGATTCTTTGTGATTTTAGTGTACAAAAATAGGTACTGAAATCGAATTTTGAAAACCTGGTTTTTGCGAATTTCAGATTTTGAGATTTTAAAAATGTGAGTTCTAAAATTCCAAGATTCTTGAATTCTGGGAT</canonical>
            <polymorphic>AATTGAGGATTTTTCCTCTTTTGTTGAATCCATAATATTTCTAAACATAAGTTTTCCCACCTTCATTATTTTGGGTCTTATGAAAGTTTTATCAGCTGCGATGAAAATAGAAAATCGGAAAAAAAACGAGGATGGAATTTTTCATAGAGACGAATTCAGATTATCAGGATCTTTTGGATCTTAGAATCTTAGAATCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTGGAATCTTAGAATTTTAGAATCTTAGATTCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCTGAAGTTGTTTGTTAAATTTTTTTTACGATTTTCTTATTTTTTAATTTTCCAAGAATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTTSCAAGAATTTTGCAAAAAACTTCCTTCAAATGTCCATCTGTCACCCATCCCTCAGGATCCCCATGAATTCTTCGTTCCATTTTTTTTTCCGAAAAAATTTCTTGCTGACATTTTAACGACAACATCTCATCCGTCCCATTCACACCCCTTTGAATTCCCAAAAAATTCTGAAAGTCAATTTCCATTTTTAGAAAAAAAAATTCTGCAAACTTTTCGAACAGAGGAAATTAAAATGGATTTTTTTGGTTGACAAAAAAGTGTGGGCGAAAAAATATAAGCGAAATCTGATGACTTTTTGGAGTTGAGAGAAATAGAGAAGTGCGTCAGTAGCCAGTGGTGACGCAGAAAAATACTACAAACAGAGATATAGATTCTTTGTGATTTTAGTGTACAAAAATAGGTACTGAAATCGAATTTTGAAAACCTGGTTTTTGCGAATTTCAGATTTTGAGATTTTAAAAATGTGAGTTCTAAAATTCCAAGATTCTTGAATTCTGGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCATAGAGACGAATTCAGATT</pcr_primer_p1>
		<pcr_primer_p2>CGTTAAAATGTCAGCAAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>478</pcr_amplicon_size>
		<canonical_amplicon>TTTCATAGAGACGAATTCAGATTATCAGGATCTTTTGGATCTTAGAATCTTAGAATCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTGGAATCTTAGAATTTTAGAATCTTAGATTCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCTGAAGTTGTTTGTTAAATTTTTTTTACGATTTTCTTATTTTTTAATTTTCCAAGAATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTTTGCAAAAAACTTCCTTCAAATGTCCATCTGTCACCCATCCCTCAGGATCCCCATGAATTCTTCGTTCCATTTTTTTTTCCGAAAAAATTTCTTGCTGACATTTTAACG</canonical_amplicon>
		<polymorphic_amplicon>TTTCATAGAGACGAATTCAGATTATCAGGATCTTTTGGATCTTAGAATCTTAGAATCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTGGAATCTTAGAATTTTAGAATCTTAGATTCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCTGAAGTTGTTTGTTAAATTTTTTTTACGATTTTCTTATTTTTTAATTTTCCAAGAATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTTSCAAGAATTTTGCAAAAAACTTCCTTCAAATGTCCATCTGTCACCCATCCCTCAGGATCCCCATGAATTCTTCGTTCCATTTTTTTTTCCGAAAAAATTTCTTGCTGACATTTTAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6169</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>148657</contig_pos>
        <strand>+</strand>
        <context>AACATAATGC[C/T]AAATTTCACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAAAATTACTAAAAAGTAGGATTTGCTGACAGAACCTGAACATAATGC</left_flank>
        <right_flank>AAATTTCACAAATCTTCGAAAAGAGAAAAGTTCCAGAAATCTACATAACG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAATTTACGATAAACAATTTCAAATTTTGAAAAAAAAAAAACCAAAAAAAAAATAGAATCATGGGATTCTGGAAGAATTGAGTCATAAAAAAGAACAATGAGAGCGAAAATATCGAAATTTGGGAATTTAGAAAATCAAAAAACAAGAGATGCAGTAATAAAAATTTTAGAAACTTCAGATACTTAGAATCTCAAAAGCACGAAAGATACCGTATTTCCTCTAATAAAAGCCGACTTCGCTAGCTTTGAGCACAATTATCTCGGTTCCTTTGAAAGATATCAAAAATGTGTCAACTGATAAAATATTTCTGATATTATGACACATTTTTTATTAGTTGACAAATTTTTAATATCTTTCACAGGAAATGAGATATATGAGCTCAAAGTTGACGGATAGAGTGGCCTTCAATTTAAGGAAGTATTTAAAAAAAGTTACAGGCTCTAAAGTTCAAAATTACTAAAAAGTAGGATTTGCTGACAGAACCTGAACATAATGCCAAATTTCACAAATCTTCGAAAAGAGAAAAGTTCCAGAAATCTACATAACGGATTCCAAAAACTTATTAAAACACCTTTTCTCCGTACACGTCCCGCCAAATTTGAATAAGTCAACAAAAGCTTGAAAGGAGAGGGATTAGCAAAGTGTCAAGTATATACCACTTTGACGGGAAAGGGGGAAACTGTAAAATAGAATAGAGCCGCGTTGTTATTTGTCATGCTCAACGGTAAATTAAGTGTGTACGCATGTTTCTGGTAAACATTGGAATGAGGGACAAGTAATGGATAATACCGGAAAGTATTGCGTAAATTTTTACTCGGAAAATGTTGGTATGTTTATCTGGATGTCCGCAATAAATCAAGGATAGAAATTGACATGATCCTTTGGGAAAAAAATAGTACCCGACGAAAATACCGTATCTCCTCTAACGGAAGAGCACCCAAGCGGTCATCTTTGAGCTTAATTATCTCGACTTCTGTGAAAGATACTAAAAAGTAGT</canonical>
            <polymorphic>ATAAATTTACGATAAACAATTTCAAATTTTGAAAAAAAAAAAACCAAAAAAAAAATAGAATCATGGGATTCTGGAAGAATTGAGTCATAAAAAAGAACAATGAGAGCGAAAATATCGAAATTTGGGAATTTAGAAAATCAAAAAACAAGAGATGCAGTAATAAAAATTTTAGAAACTTCAGATACTTAGAATCTCAAAAGCACGAAAGATACCGTATTTCCTCTAATAAAAGCCGACTTCGCTAGCTTTGAGCACAATTATCTCGGTTCCTTTGAAAGATATCAAAAATGTGTCAACTGATAAAATATTTCTGATATTATGACACATTTTTTATTAGTTGACAAATTTTTAATATCTTTCACAGGAAATGAGATATATGAGCTCAAAGTTGACGGATAGAGTGGCCTTCAATTTAAGGAAGTATTTAAAAAAAGTTACAGGCTCTAAAGTTCAAAATTACTAAAAAGTAGGATTTGCTGACAGAACCTGAACATAATGCYAAATTTCACAAATCTTCGAAAAGAGAAAAGTTCCAGAAATCTACATAACGGATTCCAAAAACTTATTAAAACACCTTTTCTCCGTACACGTCCCGCCAAATTTGAATAAGTCAACAAAAGCTTGAAAGGAGAGGGATTAGCAAAGTGTCAAGTATATACCACTTTGACGGGAAAGGGGGAAACTGTAAAATAGAATAGAGCCGCGTTGTTATTTGTCATGCTCAACGGTAAATTAAGTGTGTACGCATGTTTCTGGTAAACATTGGAATGAGGGACAAGTAATGGATAATACCGGAAAGTATTGCGTAAATTTTTACTCGGAAAATGTTGGTATGTTTATCTGGATGTCCGCAATAAATCAAGGATAGAAATTGACATGATCCTTTGGGAAAAAAATAGTACCCGACGAAAATACCGTATCTCCTCTAACGGAAGAGCACCCAAGCGGTCATCTTTGAGCTTAATTATCTCGACTTCTGTGAAAGATACTAAAAAGTAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACAGGCTCTAAAGTTCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTGGTATATACTTGACACTTTGCTA</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>TTACAGGCTCTAAAGTTCAAAATTACTAAAAAGTAGGATTTGCTGACAGAACCTGAACATAATGCCAAATTTCACAAATCTTCGAAAAGAGAAAAGTTCCAGAAATCTACATAACGGATTCCAAAAACTTATTAAAACACCTTTTCTCCGTACACGTCCCGCCAAATTTGAATAAGTCAACAAAAGCTTGAAAGGAGAGGGATTAGCAAAGTGTCAAGTATATACCAC</canonical_amplicon>
		<polymorphic_amplicon>TTACAGGCTCTAAAGTTCAAAATTACTAAAAAGTAGGATTTGCTGACAGAACCTGAACATAATGCYAAATTTCACAAATCTTCGAAAAGAGAAAAGTTCCAGAAATCTACATAACGGATTCCAAAAACTTATTAAAACACCTTTTCTCCGTACACGTCCCGCCAAATTTGAATAAGTCAACAAAAGCTTGAAAGGAGAGGGATTAGCAAAGTGTCAAGTATATACCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6170</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>148700</contig_pos>
        <strand>+</strand>
        <context>CCAGAAATCT[A/G]CATAACGGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAATGCCAAATTTCACAAATCTTCGAAAAGAGAAAAGTTCCAGAAATCT</left_flank>
        <right_flank>CATAACGGATTCCAAAAACTTATTAAAACACCTTTTCTCCGTACACGTCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAAAAAAAAATAGAATCATGGGATTCTGGAAGAATTGAGTCATAAAAAAGAACAATGAGAGCGAAAATATCGAAATTTGGGAATTTAGAAAATCAAAAAACAAGAGATGCAGTAATAAAAATTTTAGAAACTTCAGATACTTAGAATCTCAAAAGCACGAAAGATACCGTATTTCCTCTAATAAAAGCCGACTTCGCTAGCTTTGAGCACAATTATCTCGGTTCCTTTGAAAGATATCAAAAATGTGTCAACTGATAAAATATTTCTGATATTATGACACATTTTTTATTAGTTGACAAATTTTTAATATCTTTCACAGGAAATGAGATATATGAGCTCAAAGTTGACGGATAGAGTGGCCTTCAATTTAAGGAAGTATTTAAAAAAAGTTACAGGCTCTAAAGTTCAAAATTACTAAAAAGTAGGATTTGCTGACAGAACCTGAACATAATGCCAAATTTCACAAATCTTCGAAAAGAGAAAAGTTCCAGAAATCTACATAACGGATTCCAAAAACTTATTAAAACACCTTTTCTCCGTACACGTCCCGCCAAATTTGAATAAGTCAACAAAAGCTTGAAAGGAGAGGGATTAGCAAAGTGTCAAGTATATACCACTTTGACGGGAAAGGGGGAAACTGTAAAATAGAATAGAGCCGCGTTGTTATTTGTCATGCTCAACGGTAAATTAAGTGTGTACGCATGTTTCTGGTAAACATTGGAATGAGGGACAAGTAATGGATAATACCGGAAAGTATTGCGTAAATTTTTACTCGGAAAATGTTGGTATGTTTATCTGGATGTCCGCAATAAATCAAGGATAGAAATTGACATGATCCTTTGGGAAAAAAATAGTACCCGACGAAAATACCGTATCTCCTCTAACGGAAGAGCACCCAAGCGGTCATCTTTGAGCTTAATTATCTCGACTTCTGTGAAAGATACTAAAAAGTAGTCAACTAATAAAATATTTTTGTGATATGATTAACATTTCATCAG</canonical>
            <polymorphic>CCAAAAAAAAAATAGAATCATGGGATTCTGGAAGAATTGAGTCATAAAAAAGAACAATGAGAGCGAAAATATCGAAATTTGGGAATTTAGAAAATCAAAAAACAAGAGATGCAGTAATAAAAATTTTAGAAACTTCAGATACTTAGAATCTCAAAAGCACGAAAGATACCGTATTTCCTCTAATAAAAGCCGACTTCGCTAGCTTTGAGCACAATTATCTCGGTTCCTTTGAAAGATATCAAAAATGTGTCAACTGATAAAATATTTCTGATATTATGACACATTTTTTATTAGTTGACAAATTTTTAATATCTTTCACAGGAAATGAGATATATGAGCTCAAAGTTGACGGATAGAGTGGCCTTCAATTTAAGGAAGTATTTAAAAAAAGTTACAGGCTCTAAAGTTCAAAATTACTAAAAAGTAGGATTTGCTGACAGAACCTGAACATAATGCCAAATTTCACAAATCTTCGAAAAGAGAAAAGTTCCAGAAATCTRCATAACGGATTCCAAAAACTTATTAAAACACCTTTTCTCCGTACACGTCCCGCCAAATTTGAATAAGTCAACAAAAGCTTGAAAGGAGAGGGATTAGCAAAGTGTCAAGTATATACCACTTTGACGGGAAAGGGGGAAACTGTAAAATAGAATAGAGCCGCGTTGTTATTTGTCATGCTCAACGGTAAATTAAGTGTGTACGCATGTTTCTGGTAAACATTGGAATGAGGGACAAGTAATGGATAATACCGGAAAGTATTGCGTAAATTTTTACTCGGAAAATGTTGGTATGTTTATCTGGATGTCCGCAATAAATCAAGGATAGAAATTGACATGATCCTTTGGGAAAAAAATAGTACCCGACGAAAATACCGTATCTCCTCTAACGGAAGAGCACCCAAGCGGTCATCTTTGAGCTTAATTATCTCGACTTCTGTGAAAGATACTAAAAAGTAGTCAACTAATAAAATATTTTTGTGATATGATTAACATTTCATCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTGACAGAACCTGAACATAAT</pcr_primer_p1>
		<pcr_primer_p2>GTTGAGCATGACAAATAACAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCTGACAGAACCTGAACATAATGCCAAATTTCACAAATCTTCGAAAAGAGAAAAGTTCCAGAAATCTACATAACGGATTCCAAAAACTTATTAAAACACCTTTTCTCCGTACACGTCCCGCCAAATTTGAATAAGTCAACAAAAGCTTGAAAGGAGAGGGATTAGCAAAGTGTCAAGTATATACCACTTTGACGGGAAAGGGGGAAACTGTAAAATAGAATAGAGCCGCGTTGTTATTTGTCATGCTCAAC</canonical_amplicon>
		<polymorphic_amplicon>GCTGACAGAACCTGAACATAATGCCAAATTTCACAAATCTTCGAAAAGAGAAAAGTTCCAGAAATCTRCATAACGGATTCCAAAAACTTATTAAAACACCTTTTCTCCGTACACGTCCCGCCAAATTTGAATAAGTCAACAAAAGCTTGAAAGGAGAGGGATTAGCAAAGTGTCAAGTATATACCACTTTGACGGGAAAGGGGGAAACTGTAAAATAGAATAGAGCCGCGTTGTTATTTGTCATGCTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6171</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>148742</contig_pos>
        <strand>+</strand>
        <context>CTTTTCTCCG[A/T]ACACGTCCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAAATCTACATAACGGATTCCAAAAACTTATTAAAACACCTTTTCTCCG</left_flank>
        <right_flank>ACACGTCCCGCCAAATTTGAATAAGTCAACAAAAGCTTGAAAGGAGAGGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATAAAAAAGAACAATGAGAGCGAAAATATCGAAATTTGGGAATTTAGAAAATCAAAAAACAAGAGATGCAGTAATAAAAATTTTAGAAACTTCAGATACTTAGAATCTCAAAAGCACGAAAGATACCGTATTTCCTCTAATAAAAGCCGACTTCGCTAGCTTTGAGCACAATTATCTCGGTTCCTTTGAAAGATATCAAAAATGTGTCAACTGATAAAATATTTCTGATATTATGACACATTTTTTATTAGTTGACAAATTTTTAATATCTTTCACAGGAAATGAGATATATGAGCTCAAAGTTGACGGATAGAGTGGCCTTCAATTTAAGGAAGTATTTAAAAAAAGTTACAGGCTCTAAAGTTCAAAATTACTAAAAAGTAGGATTTGCTGACAGAACCTGAACATAATGCCAAATTTCACAAATCTTCGAAAAGAGAAAAGTTCCAGAAATCTACATAACGGATTCCAAAAACTTATTAAAACACCTTTTCTCCGTACACGTCCCGCCAAATTTGAATAAGTCAACAAAAGCTTGAAAGGAGAGGGATTAGCAAAGTGTCAAGTATATACCACTTTGACGGGAAAGGGGGAAACTGTAAAATAGAATAGAGCCGCGTTGTTATTTGTCATGCTCAACGGTAAATTAAGTGTGTACGCATGTTTCTGGTAAACATTGGAATGAGGGACAAGTAATGGATAATACCGGAAAGTATTGCGTAAATTTTTACTCGGAAAATGTTGGTATGTTTATCTGGATGTCCGCAATAAATCAAGGATAGAAATTGACATGATCCTTTGGGAAAAAAATAGTACCCGACGAAAATACCGTATCTCCTCTAACGGAAGAGCACCCAAGCGGTCATCTTTGAGCTTAATTATCTCGACTTCTGTGAAAGATACTAAAAAGTAGTCAACTAATAAAATATTTTTGTGATATGATTAACATTTCATCAGTTGACCGCTACTTCACATCTTTAAAATAAATCGAGATATAAG</canonical>
            <polymorphic>CATAAAAAAGAACAATGAGAGCGAAAATATCGAAATTTGGGAATTTAGAAAATCAAAAAACAAGAGATGCAGTAATAAAAATTTTAGAAACTTCAGATACTTAGAATCTCAAAAGCACGAAAGATACCGTATTTCCTCTAATAAAAGCCGACTTCGCTAGCTTTGAGCACAATTATCTCGGTTCCTTTGAAAGATATCAAAAATGTGTCAACTGATAAAATATTTCTGATATTATGACACATTTTTTATTAGTTGACAAATTTTTAATATCTTTCACAGGAAATGAGATATATGAGCTCAAAGTTGACGGATAGAGTGGCCTTCAATTTAAGGAAGTATTTAAAAAAAGTTACAGGCTCTAAAGTTCAAAATTACTAAAAAGTAGGATTTGCTGACAGAACCTGAACATAATGCCAAATTTCACAAATCTTCGAAAAGAGAAAAGTTCCAGAAATCTACATAACGGATTCCAAAAACTTATTAAAACACCTTTTCTCCGWACACGTCCCGCCAAATTTGAATAAGTCAACAAAAGCTTGAAAGGAGAGGGATTAGCAAAGTGTCAAGTATATACCACTTTGACGGGAAAGGGGGAAACTGTAAAATAGAATAGAGCCGCGTTGTTATTTGTCATGCTCAACGGTAAATTAAGTGTGTACGCATGTTTCTGGTAAACATTGGAATGAGGGACAAGTAATGGATAATACCGGAAAGTATTGCGTAAATTTTTACTCGGAAAATGTTGGTATGTTTATCTGGATGTCCGCAATAAATCAAGGATAGAAATTGACATGATCCTTTGGGAAAAAAATAGTACCCGACGAAAATACCGTATCTCCTCTAACGGAAGAGCACCCAAGCGGTCATCTTTGAGCTTAATTATCTCGACTTCTGTGAAAGATACTAAAAAGTAGTCAACTAATAAAATATTTTTGTGATATGATTAACATTTCATCAGTTGACCGCTACTTCACATCTTTAAAATAAATCGAGATATAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 185 158 157</canonical_bands>
                <polymorphic_bands>657 185 158</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>243 209 196 129 51 45 44 40 26 17</canonical_bands>
                <polymorphic_bands>243 222 209 129 51 45 44 40 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCTTCGAAAAGAGAAAAGTTC</pcr_primer_p1>
		<pcr_primer_p2>AGAAACATGCGTACACACTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AATCTTCGAAAAGAGAAAAGTTCCAGAAATCTACATAACGGATTCCAAAAACTTATTAAAACACCTTTTCTCCGTACACGTCCCGCCAAATTTGAATAAGTCAACAAAAGCTTGAAAGGAGAGGGATTAGCAAAGTGTCAAGTATATACCACTTTGACGGGAAAGGGGGAAACTGTAAAATAGAATAGAGCCGCGTTGTTATTTGTCATGCTCAACGGTAAATTAAGTGTGTACGCATGTTTCT</canonical_amplicon>
		<polymorphic_amplicon>AATCTTCGAAAAGAGAAAAGTTCCAGAAATCTACATAACGGATTCCAAAAACTTATTAAAACACCTTTTCTCCGWACACGTCCCGCCAAATTTGAATAAGTCAACAAAAGCTTGAAAGGAGAGGGATTAGCAAAGTGTCAAGTATATACCACTTTGACGGGAAAGGGGGAAACTGTAAAATAGAATAGAGCCGCGTTGTTATTTGTCATGCTCAACGGTAAATTAAGTGTGTACGCATGTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6172</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>148845</contig_pos>
        <strand>+</strand>
        <context>GGAAACTGTA[A/G]AATAGAATAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGCAAAGTGTCAAGTATATACCACTTTGACGGGAAAGGGGGAAACTGTA</left_flank>
        <right_flank>AATAGAATAGAGCCGCGTTGTTATTTGTCATGCTCAACGGTAAATTAAGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATCTCAAAAGCACGAAAGATACCGTATTTCCTCTAATAAAAGCCGACTTCGCTAGCTTTGAGCACAATTATCTCGGTTCCTTTGAAAGATATCAAAAATGTGTCAACTGATAAAATATTTCTGATATTATGACACATTTTTTATTAGTTGACAAATTTTTAATATCTTTCACAGGAAATGAGATATATGAGCTCAAAGTTGACGGATAGAGTGGCCTTCAATTTAAGGAAGTATTTAAAAAAAGTTACAGGCTCTAAAGTTCAAAATTACTAAAAAGTAGGATTTGCTGACAGAACCTGAACATAATGCCAAATTTCACAAATCTTCGAAAAGAGAAAAGTTCCAGAAATCTACATAACGGATTCCAAAAACTTATTAAAACACCTTTTCTCCGTACACGTCCCGCCAAATTTGAATAAGTCAACAAAAGCTTGAAAGGAGAGGGATTAGCAAAGTGTCAAGTATATACCACTTTGACGGGAAAGGGGGAAACTGTAAAATAGAATAGAGCCGCGTTGTTATTTGTCATGCTCAACGGTAAATTAAGTGTGTACGCATGTTTCTGGTAAACATTGGAATGAGGGACAAGTAATGGATAATACCGGAAAGTATTGCGTAAATTTTTACTCGGAAAATGTTGGTATGTTTATCTGGATGTCCGCAATAAATCAAGGATAGAAATTGACATGATCCTTTGGGAAAAAAATAGTACCCGACGAAAATACCGTATCTCCTCTAACGGAAGAGCACCCAAGCGGTCATCTTTGAGCTTAATTATCTCGACTTCTGTGAAAGATACTAAAAAGTAGTCAACTAATAAAATATTTTTGTGATATGATTAACATTTCATCAGTTGACCGCTACTTCACATCTTTAAAATAAATCGAGATATAAGGGTATGTTTACGGTAAGTCATTTTTGACATTTTCAGTGGGAACTAGCCAAATTCAGATTCCTGAAAAATGAGTCTAGAATTTTTCGAGTTCTCTGAAATTATT</canonical>
            <polymorphic>GAATCTCAAAAGCACGAAAGATACCGTATTTCCTCTAATAAAAGCCGACTTCGCTAGCTTTGAGCACAATTATCTCGGTTCCTTTGAAAGATATCAAAAATGTGTCAACTGATAAAATATTTCTGATATTATGACACATTTTTTATTAGTTGACAAATTTTTAATATCTTTCACAGGAAATGAGATATATGAGCTCAAAGTTGACGGATAGAGTGGCCTTCAATTTAAGGAAGTATTTAAAAAAAGTTACAGGCTCTAAAGTTCAAAATTACTAAAAAGTAGGATTTGCTGACAGAACCTGAACATAATGCCAAATTTCACAAATCTTCGAAAAGAGAAAAGTTCCAGAAATCTACATAACGGATTCCAAAAACTTATTAAAACACCTTTTCTCCGTACACGTCCCGCCAAATTTGAATAAGTCAACAAAAGCTTGAAAGGAGAGGGATTAGCAAAGTGTCAAGTATATACCACTTTGACGGGAAAGGGGGAAACTGTARAATAGAATAGAGCCGCGTTGTTATTTGTCATGCTCAACGGTAAATTAAGTGTGTACGCATGTTTCTGGTAAACATTGGAATGAGGGACAAGTAATGGATAATACCGGAAAGTATTGCGTAAATTTTTACTCGGAAAATGTTGGTATGTTTATCTGGATGTCCGCAATAAATCAAGGATAGAAATTGACATGATCCTTTGGGAAAAAAATAGTACCCGACGAAAATACCGTATCTCCTCTAACGGAAGAGCACCCAAGCGGTCATCTTTGAGCTTAATTATCTCGACTTCTGTGAAAGATACTAAAAAGTAGTCAACTAATAAAATATTTTTGTGATATGATTAACATTTCATCAGTTGACCGCTACTTCACATCTTTAAAATAAATCGAGATATAAGGGTATGTTTACGGTAAGTCATTTTTGACATTTTCAGTGGGAACTAGCCAAATTCAGATTCCTGAAAAATGAGTCTAGAATTTTTCGAGTTCTCTGAAATTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAATTTGAATAAGTCAACAAA</pcr_primer_p1>
		<pcr_primer_p2>TCCAGATAAACATACCAACATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAAATTTGAATAAGTCAACAAAAGCTTGAAAGGAGAGGGATTAGCAAAGTGTCAAGTATATACCACTTTGACGGGAAAGGGGGAAACTGTAAAATAGAATAGAGCCGCGTTGTTATTTGTCATGCTCAACGGTAAATTAAGTGTGTACGCATGTTTCTGGTAAACATTGGAATGAGGGACAAGTAATGGATAATACCGGAAAGTATTGCGTAAATTTTTACTCGGAAAATGTTGGTATGTTTATCTGGA</canonical_amplicon>
		<polymorphic_amplicon>CCAAATTTGAATAAGTCAACAAAAGCTTGAAAGGAGAGGGATTAGCAAAGTGTCAAGTATATACCACTTTGACGGGAAAGGGGGAAACTGTARAATAGAATAGAGCCGCGTTGTTATTTGTCATGCTCAACGGTAAATTAAGTGTGTACGCATGTTTCTGGTAAACATTGGAATGAGGGACAAGTAATGGATAATACCGGAAAGTATTGCGTAAATTTTTACTCGGAAAATGTTGGTATGTTTATCTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6173</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>148858</contig_pos>
        <strand>+</strand>
        <context>TAGAATAGAG[C/T]CGCGTTGTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTATATACCACTTTGACGGGAAAGGGGGAAACTGTAAAATAGAATAGAG</left_flank>
        <right_flank>CGCGTTGTTATTTGTCATGCTCAACGGTAAATTAAGTGTGTACGCATGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGAAAGATACCGTATTTCCTCTAATAAAAGCCGACTTCGCTAGCTTTGAGCACAATTATCTCGGTTCCTTTGAAAGATATCAAAAATGTGTCAACTGATAAAATATTTCTGATATTATGACACATTTTTTATTAGTTGACAAATTTTTAATATCTTTCACAGGAAATGAGATATATGAGCTCAAAGTTGACGGATAGAGTGGCCTTCAATTTAAGGAAGTATTTAAAAAAAGTTACAGGCTCTAAAGTTCAAAATTACTAAAAAGTAGGATTTGCTGACAGAACCTGAACATAATGCCAAATTTCACAAATCTTCGAAAAGAGAAAAGTTCCAGAAATCTACATAACGGATTCCAAAAACTTATTAAAACACCTTTTCTCCGTACACGTCCCGCCAAATTTGAATAAGTCAACAAAAGCTTGAAAGGAGAGGGATTAGCAAAGTGTCAAGTATATACCACTTTGACGGGAAAGGGGGAAACTGTAAAATAGAATAGAGCCGCGTTGTTATTTGTCATGCTCAACGGTAAATTAAGTGTGTACGCATGTTTCTGGTAAACATTGGAATGAGGGACAAGTAATGGATAATACCGGAAAGTATTGCGTAAATTTTTACTCGGAAAATGTTGGTATGTTTATCTGGATGTCCGCAATAAATCAAGGATAGAAATTGACATGATCCTTTGGGAAAAAAATAGTACCCGACGAAAATACCGTATCTCCTCTAACGGAAGAGCACCCAAGCGGTCATCTTTGAGCTTAATTATCTCGACTTCTGTGAAAGATACTAAAAAGTAGTCAACTAATAAAATATTTTTGTGATATGATTAACATTTCATCAGTTGACCGCTACTTCACATCTTTAAAATAAATCGAGATATAAGGGTATGTTTACGGTAAGTCATTTTTGACATTTTCAGTGGGAACTAGCCAAATTCAGATTCCTGAAAAATGAGTCTAGAATTTTTCGAGTTCTCTGAAATTATTAGAGTATACTAAA</canonical>
            <polymorphic>ACGAAAGATACCGTATTTCCTCTAATAAAAGCCGACTTCGCTAGCTTTGAGCACAATTATCTCGGTTCCTTTGAAAGATATCAAAAATGTGTCAACTGATAAAATATTTCTGATATTATGACACATTTTTTATTAGTTGACAAATTTTTAATATCTTTCACAGGAAATGAGATATATGAGCTCAAAGTTGACGGATAGAGTGGCCTTCAATTTAAGGAAGTATTTAAAAAAAGTTACAGGCTCTAAAGTTCAAAATTACTAAAAAGTAGGATTTGCTGACAGAACCTGAACATAATGCCAAATTTCACAAATCTTCGAAAAGAGAAAAGTTCCAGAAATCTACATAACGGATTCCAAAAACTTATTAAAACACCTTTTCTCCGTACACGTCCCGCCAAATTTGAATAAGTCAACAAAAGCTTGAAAGGAGAGGGATTAGCAAAGTGTCAAGTATATACCACTTTGACGGGAAAGGGGGAAACTGTAAAATAGAATAGAGYCGCGTTGTTATTTGTCATGCTCAACGGTAAATTAAGTGTGTACGCATGTTTCTGGTAAACATTGGAATGAGGGACAAGTAATGGATAATACCGGAAAGTATTGCGTAAATTTTTACTCGGAAAATGTTGGTATGTTTATCTGGATGTCCGCAATAAATCAAGGATAGAAATTGACATGATCCTTTGGGAAAAAAATAGTACCCGACGAAAATACCGTATCTCCTCTAACGGAAGAGCACCCAAGCGGTCATCTTTGAGCTTAATTATCTCGACTTCTGTGAAAGATACTAAAAAGTAGTCAACTAATAAAATATTTTTGTGATATGATTAACATTTCATCAGTTGACCGCTACTTCACATCTTTAAAATAAATCGAGATATAAGGGTATGTTTACGGTAAGTCATTTTTGACATTTTCAGTGGGAACTAGCCAAATTCAGATTCCTGAAAAATGAGTCTAGAATTTTTCGAGTTCTCTGAAATTATTAGAGTATACTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>392 199 153 148 108</canonical_bands>
                <polymorphic_bands>392 256 199 153</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>259 179 172 136 80 70 37 31 23 13</canonical_bands>
                <polymorphic_bands>339 179 172 136 70 37 31 23 13</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAATTTGAATAAGTCAACAAA</pcr_primer_p1>
		<pcr_primer_p2>TCCAGATAAACATACCAACATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAAATTTGAATAAGTCAACAAAAGCTTGAAAGGAGAGGGATTAGCAAAGTGTCAAGTATATACCACTTTGACGGGAAAGGGGGAAACTGTAAAATAGAATAGAGCCGCGTTGTTATTTGTCATGCTCAACGGTAAATTAAGTGTGTACGCATGTTTCTGGTAAACATTGGAATGAGGGACAAGTAATGGATAATACCGGAAAGTATTGCGTAAATTTTTACTCGGAAAATGTTGGTATGTTTATCTGGA</canonical_amplicon>
		<polymorphic_amplicon>CCAAATTTGAATAAGTCAACAAAAGCTTGAAAGGAGAGGGATTAGCAAAGTGTCAAGTATATACCACTTTGACGGGAAAGGGGGAAACTGTAAAATAGAATAGAGYCGCGTTGTTATTTGTCATGCTCAACGGTAAATTAAGTGTGTACGCATGTTTCTGGTAAACATTGGAATGAGGGACAAGTAATGGATAATACCGGAAAGTATTGCGTAAATTTTTACTCGGAAAATGTTGGTATGTTTATCTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6174</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>148968</contig_pos>
        <strand>+</strand>
        <context>ATTGCGTAAA[G/T]TTTTACTCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATTGGAATGAGGGACAAGTAATGGATAATACCGGAAAGTATTGCGTAAA</left_flank>
        <right_flank>TTTTACTCGGAAAATGTTGGTATGTTTATCTGGATGTCCGCAATAAATCA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATATTATGACACATTTTTTATTAGTTGACAAATTTTTAATATCTTTCACAGGAAATGAGATATATGAGCTCAAAGTTGACGGATAGAGTGGCCTTCAATTTAAGGAAGTATTTAAAAAAAGTTACAGGCTCTAAAGTTCAAAATTACTAAAAAGTAGGATTTGCTGACAGAACCTGAACATAATGCCAAATTTCACAAATCTTCGAAAAGAGAAAAGTTCCAGAAATCTACATAACGGATTCCAAAAACTTATTAAAACACCTTTTCTCCGTACACGTCCCGCCAAATTTGAATAAGTCAACAAAAGCTTGAAAGGAGAGGGATTAGCAAAGTGTCAAGTATATACCACTTTGACGGGAAAGGGGGAAACTGTAAAATAGAATAGAGCCGCGTTGTTATTTGTCATGCTCAACGGTAAATTAAGTGTGTACGCATGTTTCTGGTAAACATTGGAATGAGGGACAAGTAATGGATAATACCGGAAAGTATTGCGTAAATTTTTACTCGGAAAATGTTGGTATGTTTATCTGGATGTCCGCAATAAATCAAGGATAGAAATTGACATGATCCTTTGGGAAAAAAATAGTACCCGACGAAAATACCGTATCTCCTCTAACGGAAGAGCACCCAAGCGGTCATCTTTGAGCTTAATTATCTCGACTTCTGTGAAAGATACTAAAAAGTAGTCAACTAATAAAATATTTTTGTGATATGATTAACATTTCATCAGTTGACCGCTACTTCACATCTTTAAAATAAATCGAGATATAAGGGTATGTTTACGGTAAGTCATTTTTGACATTTTCAGTGGGAACTAGCCAAATTCAGATTCCTGAAAAATGAGTCTAGAATTTTTCGAGTTCTCTGAAATTATTAGAGTATACTAAACAAACATAGAGCTTCATTTTTCCAATTGACAACTTTTTGTAGCTTTTGTGGTTTTGGAGATATGCGCCTTTAAAGTTGGTGACGCTTACAAGCAGCAAGAGAGACAGGAG</canonical>
            <polymorphic>TGATATTATGACACATTTTTTATTAGTTGACAAATTTTTAATATCTTTCACAGGAAATGAGATATATGAGCTCAAAGTTGACGGATAGAGTGGCCTTCAATTTAAGGAAGTATTTAAAAAAAGTTACAGGCTCTAAAGTTCAAAATTACTAAAAAGTAGGATTTGCTGACAGAACCTGAACATAATGCCAAATTTCACAAATCTTCGAAAAGAGAAAAGTTCCAGAAATCTACATAACGGATTCCAAAAACTTATTAAAACACCTTTTCTCCGTACACGTCCCGCCAAATTTGAATAAGTCAACAAAAGCTTGAAAGGAGAGGGATTAGCAAAGTGTCAAGTATATACCACTTTGACGGGAAAGGGGGAAACTGTAAAATAGAATAGAGCCGCGTTGTTATTTGTCATGCTCAACGGTAAATTAAGTGTGTACGCATGTTTCTGGTAAACATTGGAATGAGGGACAAGTAATGGATAATACCGGAAAGTATTGCGTAAAKTTTTACTCGGAAAATGTTGGTATGTTTATCTGGATGTCCGCAATAAATCAAGGATAGAAATTGACATGATCCTTTGGGAAAAAAATAGTACCCGACGAAAATACCGTATCTCCTCTAACGGAAGAGCACCCAAGCGGTCATCTTTGAGCTTAATTATCTCGACTTCTGTGAAAGATACTAAAAAGTAGTCAACTAATAAAATATTTTTGTGATATGATTAACATTTCATCAGTTGACCGCTACTTCACATCTTTAAAATAAATCGAGATATAAGGGTATGTTTACGGTAAGTCATTTTTGACATTTTCAGTGGGAACTAGCCAAATTCAGATTCCTGAAAAATGAGTCTAGAATTTTTCGAGTTCTCTGAAATTATTAGAGTATACTAAACAAACATAGAGCTTCATTTTTCCAATTGACAACTTTTTGTAGCTTTTGTGGTTTTGGAGATATGCGCCTTTAAAGTTGGTGACGCTTACAAGCAGCAAGAGAGACAGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>326 210 158 149 97 32 28</canonical_bands>
                <polymorphic_bands>536 158 149 97 32 28</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>172 132 97 93 87 78 66 61 47 45 43 32 28 19</canonical_bands>
                <polymorphic_bands>172 139 132 97 93 87 66 47 45 43 32 28 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGATTAGCAAAGTGTCAAGTA</pcr_primer_p1>
		<pcr_primer_p2>CATGTCAATTTCTATCCTTGATT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGGATTAGCAAAGTGTCAAGTATATACCACTTTGACGGGAAAGGGGGAAACTGTAAAATAGAATAGAGCCGCGTTGTTATTTGTCATGCTCAACGGTAAATTAAGTGTGTACGCATGTTTCTGGTAAACATTGGAATGAGGGACAAGTAATGGATAATACCGGAAAGTATTGCGTAAATTTTTACTCGGAAAATGTTGGTATGTTTATCTGGATGTCCGCAATAAATCAAGGATAGAAATTGACATG</canonical_amplicon>
		<polymorphic_amplicon>GGGATTAGCAAAGTGTCAAGTATATACCACTTTGACGGGAAAGGGGGAAACTGTAAAATAGAATAGAGCCGCGTTGTTATTTGTCATGCTCAACGGTAAATTAAGTGTGTACGCATGTTTCTGGTAAACATTGGAATGAGGGACAAGTAATGGATAATACCGGAAAGTATTGCGTAAAKTTTTACTCGGAAAATGTTGGTATGTTTATCTGGATGTCCGCAATAAATCAAGGATAGAAATTGACATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6175</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>151049</contig_pos>
        <strand>+</strand>
        <context>CCTCCTCATT[C/T]CATTGTTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGGTGGGCTTTTGTAACCACTTTACGATCTCCTATCCCTCCTCCTCATT</left_flank>
        <right_flank>CATTGTTTTCTTTTCCTCATTTTCCAAAGAACTACTGTACAAGAAAAAAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATTTCAGAATTTTCAAAAGCTAATTTAACCACTGCAATCACGGGTCAACGATTTGAAATTTCCAAGAAAACCGGGTTTTTGTATTTTCCTCAAACGCATAATAGTTATGACCTTTATACTTTTTCACCTCAAAAAATTCCAAAACCATGAGGATGCATCTTTTTCAAAAATCTGGGTCAAAATATCCATTATCAAAATTAAGAACCGTCACCCAAAATAAATTTTTACTACCTCCTCCGCTTCTTTTTCTTCCCATTCTCCACTAAAAAAATGAAACTGGTGGGCTTTTGTAACCACTTTACGATCTCCTATCCCTCCTCCTCATTCCATTGTTTTCTTTTCCTCATTTTCCAAAGAACTACTGTACAAGAAAAAAAAGCTATTGCGAAATTAATCATTTTTCCTCAAAAAAAAGTTGAAAAAAAGCCAAAAAAAGAGAGGCAGAATCAGATGAATTTGGGATGAATTTGGTGGTCCGTGTTTGTCAAAAAAAAGCTAAAGAAGAGAGAAAAATGGAGAAGAAAAAAAAGGATGGTTAAATTGATTAGAATTGACAAAAAATAGGAGAGAGGGAAAAACAGAAACAAAAAACCAAAGCAATTCACGAAGGGATTAAAATTGGTTTAGTGAGAGGTCGACACCAATTTTTGGTGCGTCTGTCTGTGTATCGGTATGTCCAATGAAATACAATGAATGTCCACAGGAAATGAGTAAAAGGAGGAATGGGTGATAGAGGAAAAAACAGAACAAGTTTCGATTTCATGGACATCGTAAAAGGTGGAATATGAAGGAGAAAAAGAAGAAGAAGAAGAAGAAGACCTCAGGAA</canonical>
            <polymorphic>TCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATTTCAGAATTTTCAAAAGCTAATTTAACCACTGCAATCACGGGTCAACGATTTGAAATTTCCAAGAAAACCGGGTTTTTGTATTTTCCTCAAACGCATAATAGTTATGACCTTTATACTTTTTCACCTCAAAAAATTCCAAAACCATGAGGATGCATCTTTTTCAAAAATCTGGGTCAAAATATCCATTATCAAAATTAAGAACCGTCACCCAAAATAAATTTTTACTACCTCCTCCGCTTCTTTTTCTTCCCATTCTCCACTAAAAAAATGAAACTGGTGGGCTTTTGTAACCACTTTACGATCTCCTATCCCTCCTCCTCATTYCATTGTTTTCTTTTCCTCATTTTCCAAAGAACTACTGTACAAGAAAAAAAAGCTATTGCGAAATTAATCATTTTTCCTCAAAAAAAAGTTGAAAAAAAGCCAAAAAAAGAGAGGCAGAATCAGATGAATTTGGGATGAATTTGGTGGTCCGTGTTTGTCAAAAAAAAGCTAAAGAAGAGAGAAAAATGGAGAAGAAAAAAAAGGATGGTTAAATTGATTAGAATTGACAAAAAATAGGAGAGAGGGAAAAACAGAAACAAAAAACCAAAGCAATTCACGAAGGGATTAAAATTGGTTTAGTGAGAGGTCGACACCAATTTTTGGTGCGTCTGTCTGTGTATCGGTATGTCCAATGAAATACAATGAATGTCCACAGGAAATGAGTAAAAGGAGGAATGGGTGATAGAGGAAAAAACAGAACAAGTTTCGATTTCATGGACATCGTAAAAGGTGGAATATGAAGGAGAAAAAGAAGAAGAAGAAGAAGAAGACCTCAGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCCAAAATAAATTTTTACTACC</pcr_primer_p1>
		<pcr_primer_p2>AATTCATCTGATTCTGCCTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CACCCAAAATAAATTTTTACTACCTCCTCCGCTTCTTTTTCTTCCCATTCTCCACTAAAAAAATGAAACTGGTGGGCTTTTGTAACCACTTTACGATCTCCTATCCCTCCTCCTCATTCCATTGTTTTCTTTTCCTCATTTTCCAAAGAACTACTGTACAAGAAAAAAAAGCTATTGCGAAATTAATCATTTTTCCTCAAAAAAAAGTTGAAAAAAAGCCAAAAAAAGAGAGGCAGAATCAGATGAATT</canonical_amplicon>
		<polymorphic_amplicon>CACCCAAAATAAATTTTTACTACCTCCTCCGCTTCTTTTTCTTCCCATTCTCCACTAAAAAAATGAAACTGGTGGGCTTTTGTAACCACTTTACGATCTCCTATCCCTCCTCCTCATTYCATTGTTTTCTTTTCCTCATTTTCCAAAGAACTACTGTACAAGAAAAAAAAGCTATTGCGAAATTAATCATTTTTCCTCAAAAAAAAGTTGAAAAAAAGCCAAAAAAAGAGAGGCAGAATCAGATGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6209</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>283226</contig_pos>
        <strand>+</strand>
        <context>CAAAAACTAG[A/G]TCAAGACCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAAAATCAGTACCGTTCTTGTCTTGAGACATTCGAATATCAAAAACTAG</left_flank>
        <right_flank>TCAAGACCATTATAATAATCCCAAAAAGAATCAGAAACTAAATATGTGTA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAACCTGTCCAATCCCAAATTCCTAAAGTTGCACGTAGCAATTTCAACATCTCGTAATGACTTCATCTTGACGTCGTAGAAGATTCCAACGTCGGAACGGAGCCGGATCTCGTCGAAATTTCGAATAGGCATAGAATGGTTTGCCTGGAATTTCTGACCAGCGATGTTGGTGTTTTTGATGACAGTCTCGATTTTTACATAGTTCGACGTATCAGATGAGATTGTAAATCGAAAGTCCACAAGACGATGCAAAACAACTTTTTTGCTAGTAATCTGATGATATGGCTCCATTGTTGTTGTTCCATTTTCATAAATATAGGTCAAGGCGAGAAGATCTTCGTTCAGATTGAGTTGAAAAATCGATTCATTTAAATAGTGACTCCAGAAGTCAATAGCAACCCATCTGAAGAAATCTCTAAAATCTAAAAACTCCGATCTGAGAACTCACTTAAAATCAGTACCGTTCTTGTCTTGAGACATTCGAATATCAAAAACTAGGTCAAGACCATTATAATAATCCCAAAAAGAATCAGAAACTAAATATGTGTAGTTTGACCCCAGAGACCTTCTCGGCGCTTCAATATTTTCAGAATTAAAATGGAGTTTTGGCATTGCCTCCGGTTCCAGTTTTATAGTCTCAAAACCGTAATCCGTCATCCCAATGCAATGTTTCGAGTGCTCCACATTGCTCACGACTATATTTTCTACGGAAATTAGGTCATTTCCGATATACGGATTGCCTGTGGAGGATATTGAAGATTTTTCATCGTTGTAGCGTTCAAAAACCTTGATCTTCTCGTCAAGGAAGCTAAAAATCGATTTTATTCTGGTCAAAAATTCGGGAATGGGCGGAGCTTAGGTCCTGCATCCCTAATTTCTGGCCCATTCTTGCGATTTTCTATGAATTTTGACCACACAACAATCGCATAAAACAATGCTTTTTTTCAAGTATTAGGTGCAAAATATTTAATGTAAAATTCACAGAATATCGACAGGGTT</canonical>
            <polymorphic>GGAACCTGTCCAATCCCAAATTCCTAAAGTTGCACGTAGCAATTTCAACATCTCGTAATGACTTCATCTTGACGTCGTAGAAGATTCCAACGTCGGAACGGAGCCGGATCTCGTCGAAATTTCGAATAGGCATAGAATGGTTTGCCTGGAATTTCTGACCAGCGATGTTGGTGTTTTTGATGACAGTCTCGATTTTTACATAGTTCGACGTATCAGATGAGATTGTAAATCGAAAGTCCACAAGACGATGCAAAACAACTTTTTTGCTAGTAATCTGATGATATGGCTCCATTGTTGTTGTTCCATTTTCATAAATATAGGTCAAGGCGAGAAGATCTTCGTTCAGATTGAGTTGAAAAATCGATTCATTTAAATAGTGACTCCAGAAGTCAATAGCAACCCATCTGAAGAAATCTCTAAAATCTAAAAACTCCGATCTGAGAACTCACTTAAAATCAGTACCGTTCTTGTCTTGAGACATTCGAATATCAAAAACTAGRTCAAGACCATTATAATAATCCCAAAAAGAATCAGAAACTAAATATGTGTAGTTTGACCCCAGAGACCTTCTCGGCGCTTCAATATTTTCAGAATTAAAATGGAGTTTTGGCATTGCCTCCGGTTCCAGTTTTATAGTCTCAAAACCGTAATCCGTCATCCCAATGCAATGTTTCGAGTGCTCCACATTGCTCACGACTATATTTTCTACGGAAATTAGGTCATTTCCGATATACGGATTGCCTGTGGAGGATATTGAAGATTTTTCATCGTTGTAGCGTTCAAAAACCTTGATCTTCTCGTCAAGGAAGCTAAAAATCGATTTTATTCTGGTCAAAAATTCGGGAATGGGCGGAGCTTAGGTCCTGCATCCCTAATTTCTGGCCCATTCTTGCGATTTTCTATGAATTTTGACCACACAACAATCGCATAAAACAATGCTTTTTTTCAAGTATTAGGTGCAAAATATTTAATGTAAAATTCACAGAATATCGACAGGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATTCATTTAAATAGTGACTCC</pcr_primer_p1>
		<pcr_primer_p2>CCAAAACTCCATTTTAATTCTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGATTCATTTAAATAGTGACTCCAGAAGTCAATAGCAACCCATCTGAAGAAATCTCTAAAATCTAAAAACTCCGATCTGAGAACTCACTTAAAATCAGTACCGTTCTTGTCTTGAGACATTCGAATATCAAAAACTAGGTCAAGACCATTATAATAATCCCAAAAAGAATCAGAAACTAAATATGTGTAGTTTGACCCCAGAGACCTTCTCGGCGCTTCAATATTTTCAGAATTAAAATGGAGTTTTGG</canonical_amplicon>
		<polymorphic_amplicon>CGATTCATTTAAATAGTGACTCCAGAAGTCAATAGCAACCCATCTGAAGAAATCTCTAAAATCTAAAAACTCCGATCTGAGAACTCACTTAAAATCAGTACCGTTCTTGTCTTGAGACATTCGAATATCAAAAACTAGRTCAAGACCATTATAATAATCCCAAAAAGAATCAGAAACTAAATATGTGTAGTTTGACCCCAGAGACCTTCTCGGCGCTTCAATATTTTCAGAATTAAAATGGAGTTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6210</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>283240</contig_pos>
        <strand>+</strand>
        <context>AGACCATTAT[A/T]ATAATCCCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTCTTGTCTTGAGACATTCGAATATCAAAAACTAGGTCAAGACCATTAT</left_flank>
        <right_flank>ATAATCCCAAAAAGAATCAGAAACTAAATATGTGTAGTTTGACCCCAGAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCAAATTCCTAAAGTTGCACGTAGCAATTTCAACATCTCGTAATGACTTCATCTTGACGTCGTAGAAGATTCCAACGTCGGAACGGAGCCGGATCTCGTCGAAATTTCGAATAGGCATAGAATGGTTTGCCTGGAATTTCTGACCAGCGATGTTGGTGTTTTTGATGACAGTCTCGATTTTTACATAGTTCGACGTATCAGATGAGATTGTAAATCGAAAGTCCACAAGACGATGCAAAACAACTTTTTTGCTAGTAATCTGATGATATGGCTCCATTGTTGTTGTTCCATTTTCATAAATATAGGTCAAGGCGAGAAGATCTTCGTTCAGATTGAGTTGAAAAATCGATTCATTTAAATAGTGACTCCAGAAGTCAATAGCAACCCATCTGAAGAAATCTCTAAAATCTAAAAACTCCGATCTGAGAACTCACTTAAAATCAGTACCGTTCTTGTCTTGAGACATTCGAATATCAAAAACTAGGTCAAGACCATTATAATAATCCCAAAAAGAATCAGAAACTAAATATGTGTAGTTTGACCCCAGAGACCTTCTCGGCGCTTCAATATTTTCAGAATTAAAATGGAGTTTTGGCATTGCCTCCGGTTCCAGTTTTATAGTCTCAAAACCGTAATCCGTCATCCCAATGCAATGTTTCGAGTGCTCCACATTGCTCACGACTATATTTTCTACGGAAATTAGGTCATTTCCGATATACGGATTGCCTGTGGAGGATATTGAAGATTTTTCATCGTTGTAGCGTTCAAAAACCTTGATCTTCTCGTCAAGGAAGCTAAAAATCGATTTTATTCTGGTCAAAAATTCGGGAATGGGCGGAGCTTAGGTCCTGCATCCCTAATTTCTGGCCCATTCTTGCGATTTTCTATGAATTTTGACCACACAACAATCGCATAAAACAATGCTTTTTTTCAAGTATTAGGTGCAAAATATTTAATGTAAAATTCACAGAATATCGACAGGGTTACTGTAGAGGAGGA</canonical>
            <polymorphic>CCCAAATTCCTAAAGTTGCACGTAGCAATTTCAACATCTCGTAATGACTTCATCTTGACGTCGTAGAAGATTCCAACGTCGGAACGGAGCCGGATCTCGTCGAAATTTCGAATAGGCATAGAATGGTTTGCCTGGAATTTCTGACCAGCGATGTTGGTGTTTTTGATGACAGTCTCGATTTTTACATAGTTCGACGTATCAGATGAGATTGTAAATCGAAAGTCCACAAGACGATGCAAAACAACTTTTTTGCTAGTAATCTGATGATATGGCTCCATTGTTGTTGTTCCATTTTCATAAATATAGGTCAAGGCGAGAAGATCTTCGTTCAGATTGAGTTGAAAAATCGATTCATTTAAATAGTGACTCCAGAAGTCAATAGCAACCCATCTGAAGAAATCTCTAAAATCTAAAAACTCCGATCTGAGAACTCACTTAAAATCAGTACCGTTCTTGTCTTGAGACATTCGAATATCAAAAACTAGGTCAAGACCATTATWATAATCCCAAAAAGAATCAGAAACTAAATATGTGTAGTTTGACCCCAGAGACCTTCTCGGCGCTTCAATATTTTCAGAATTAAAATGGAGTTTTGGCATTGCCTCCGGTTCCAGTTTTATAGTCTCAAAACCGTAATCCGTCATCCCAATGCAATGTTTCGAGTGCTCCACATTGCTCACGACTATATTTTCTACGGAAATTAGGTCATTTCCGATATACGGATTGCCTGTGGAGGATATTGAAGATTTTTCATCGTTGTAGCGTTCAAAAACCTTGATCTTCTCGTCAAGGAAGCTAAAAATCGATTTTATTCTGGTCAAAAATTCGGGAATGGGCGGAGCTTAGGTCCTGCATCCCTAATTTCTGGCCCATTCTTGCGATTTTCTATGAATTTTGACCACACAACAATCGCATAAAACAATGCTTTTTTTCAAGTATTAGGTGCAAAATATTTAATGTAAAATTCACAGAATATCGACAGGGTTACTGTAGAGGAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATTCATTTAAATAGTGACTCC</pcr_primer_p1>
		<pcr_primer_p2>CCAAAACTCCATTTTAATTCTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGATTCATTTAAATAGTGACTCCAGAAGTCAATAGCAACCCATCTGAAGAAATCTCTAAAATCTAAAAACTCCGATCTGAGAACTCACTTAAAATCAGTACCGTTCTTGTCTTGAGACATTCGAATATCAAAAACTAGGTCAAGACCATTATAATAATCCCAAAAAGAATCAGAAACTAAATATGTGTAGTTTGACCCCAGAGACCTTCTCGGCGCTTCAATATTTTCAGAATTAAAATGGAGTTTTGG</canonical_amplicon>
		<polymorphic_amplicon>CGATTCATTTAAATAGTGACTCCAGAAGTCAATAGCAACCCATCTGAAGAAATCTCTAAAATCTAAAAACTCCGATCTGAGAACTCACTTAAAATCAGTACCGTTCTTGTCTTGAGACATTCGAATATCAAAAACTAGGTCAAGACCATTATWATAATCCCAAAAAGAATCAGAAACTAAATATGTGTAGTTTGACCCCAGAGACCTTCTCGGCGCTTCAATATTTTCAGAATTAAAATGGAGTTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6211</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>283413</contig_pos>
        <strand>+</strand>
        <context>GTGCTCCACA[C/T]TGCTCACGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCAAAACCGTAATCCGTCATCCCAATGCAATGTTTCGAGTGCTCCACA</left_flank>
        <right_flank>TGCTCACGACTATATTTTCTACGGAAATTAGGTCATTTCCGATATACGGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGATTTTTACATAGTTCGACGTATCAGATGAGATTGTAAATCGAAAGTCCACAAGACGATGCAAAACAACTTTTTTGCTAGTAATCTGATGATATGGCTCCATTGTTGTTGTTCCATTTTCATAAATATAGGTCAAGGCGAGAAGATCTTCGTTCAGATTGAGTTGAAAAATCGATTCATTTAAATAGTGACTCCAGAAGTCAATAGCAACCCATCTGAAGAAATCTCTAAAATCTAAAAACTCCGATCTGAGAACTCACTTAAAATCAGTACCGTTCTTGTCTTGAGACATTCGAATATCAAAAACTAGGTCAAGACCATTATAATAATCCCAAAAAGAATCAGAAACTAAATATGTGTAGTTTGACCCCAGAGACCTTCTCGGCGCTTCAATATTTTCAGAATTAAAATGGAGTTTTGGCATTGCCTCCGGTTCCAGTTTTATAGTCTCAAAACCGTAATCCGTCATCCCAATGCAATGTTTCGAGTGCTCCACATTGCTCACGACTATATTTTCTACGGAAATTAGGTCATTTCCGATATACGGATTGCCTGTGGAGGATATTGAAGATTTTTCATCGTTGTAGCGTTCAAAAACCTTGATCTTCTCGTCAAGGAAGCTAAAAATCGATTTTATTCTGGTCAAAAATTCGGGAATGGGCGGAGCTTAGGTCCTGCATCCCTAATTTCTGGCCCATTCTTGCGATTTTCTATGAATTTTGACCACACAACAATCGCATAAAACAATGCTTTTTTTCAAGTATTAGGTGCAAAATATTTAATGTAAAATTCACAGAATATCGACAGGGTTACTGTAGAGGAGGAAGTGTGCAGTGTGTTTGCAGACCAGCCACATCATGATGCATCACACTACCCGCGCAAAAGTTTTTTGTCTTGAACTTTTTTTTGAAAATCGAAAAAATAGGCCTAAAAATTACAGCAATAAACGTTCCTTTAAATGTGCATTCAAAACCGGGCCTAAGCTCCGCCCACTCTCG</canonical>
            <polymorphic>CTCGATTTTTACATAGTTCGACGTATCAGATGAGATTGTAAATCGAAAGTCCACAAGACGATGCAAAACAACTTTTTTGCTAGTAATCTGATGATATGGCTCCATTGTTGTTGTTCCATTTTCATAAATATAGGTCAAGGCGAGAAGATCTTCGTTCAGATTGAGTTGAAAAATCGATTCATTTAAATAGTGACTCCAGAAGTCAATAGCAACCCATCTGAAGAAATCTCTAAAATCTAAAAACTCCGATCTGAGAACTCACTTAAAATCAGTACCGTTCTTGTCTTGAGACATTCGAATATCAAAAACTAGGTCAAGACCATTATAATAATCCCAAAAAGAATCAGAAACTAAATATGTGTAGTTTGACCCCAGAGACCTTCTCGGCGCTTCAATATTTTCAGAATTAAAATGGAGTTTTGGCATTGCCTCCGGTTCCAGTTTTATAGTCTCAAAACCGTAATCCGTCATCCCAATGCAATGTTTCGAGTGCTCCACAYTGCTCACGACTATATTTTCTACGGAAATTAGGTCATTTCCGATATACGGATTGCCTGTGGAGGATATTGAAGATTTTTCATCGTTGTAGCGTTCAAAAACCTTGATCTTCTCGTCAAGGAAGCTAAAAATCGATTTTATTCTGGTCAAAAATTCGGGAATGGGCGGAGCTTAGGTCCTGCATCCCTAATTTCTGGCCCATTCTTGCGATTTTCTATGAATTTTGACCACACAACAATCGCATAAAACAATGCTTTTTTTCAAGTATTAGGTGCAAAATATTTAATGTAAAATTCACAGAATATCGACAGGGTTACTGTAGAGGAGGAAGTGTGCAGTGTGTTTGCAGACCAGCCACATCATGATGCATCACACTACCCGCGCAAAAGTTTTTTGTCTTGAACTTTTTTTTGAAAATCGAAAAAATAGGCCTAAAAATTACAGCAATAAACGTTCCTTTAAATGTGCATTCAAAACCGGGCCTAAGCTCCGCCCACTCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAATCCCAAAAAGAATCAGAAA</pcr_primer_p1>
		<pcr_primer_p2>AAATCTTCAATATCCTCCACAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATAATCCCAAAAAGAATCAGAAACTAAATATGTGTAGTTTGACCCCAGAGACCTTCTCGGCGCTTCAATATTTTCAGAATTAAAATGGAGTTTTGGCATTGCCTCCGGTTCCAGTTTTATAGTCTCAAAACCGTAATCCGTCATCCCAATGCAATGTTTCGAGTGCTCCACATTGCTCACGACTATATTTTCTACGGAAATTAGGTCATTTCCGATATACGGATTGCCTGTGGAGGATATTGAAGATTT</canonical_amplicon>
		<polymorphic_amplicon>ATAATCCCAAAAAGAATCAGAAACTAAATATGTGTAGTTTGACCCCAGAGACCTTCTCGGCGCTTCAATATTTTCAGAATTAAAATGGAGTTTTGGCATTGCCTCCGGTTCCAGTTTTATAGTCTCAAAACCGTAATCCGTCATCCCAATGCAATGTTTCGAGTGCTCCACAYTGCTCACGACTATATTTTCTACGGAAATTAGGTCATTTCCGATATACGGATTGCCTGTGGAGGATATTGAAGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6212</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>283490</contig_pos>
        <strand>+</strand>
        <context>TTGAAGATTT[G/T]TCATCGTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTAGGTCATTTCCGATATACGGATTGCCTGTGGAGGATATTGAAGATTT</left_flank>
        <right_flank>TCATCGTTGTAGCGTTCAAAAACCTTGATCTTCTCGTCAAGGAAGCTAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTAGTAATCTGATGATATGGCTCCATTGTTGTTGTTCCATTTTCATAAATATAGGTCAAGGCGAGAAGATCTTCGTTCAGATTGAGTTGAAAAATCGATTCATTTAAATAGTGACTCCAGAAGTCAATAGCAACCCATCTGAAGAAATCTCTAAAATCTAAAAACTCCGATCTGAGAACTCACTTAAAATCAGTACCGTTCTTGTCTTGAGACATTCGAATATCAAAAACTAGGTCAAGACCATTATAATAATCCCAAAAAGAATCAGAAACTAAATATGTGTAGTTTGACCCCAGAGACCTTCTCGGCGCTTCAATATTTTCAGAATTAAAATGGAGTTTTGGCATTGCCTCCGGTTCCAGTTTTATAGTCTCAAAACCGTAATCCGTCATCCCAATGCAATGTTTCGAGTGCTCCACATTGCTCACGACTATATTTTCTACGGAAATTAGGTCATTTCCGATATACGGATTGCCTGTGGAGGATATTGAAGATTTTTCATCGTTGTAGCGTTCAAAAACCTTGATCTTCTCGTCAAGGAAGCTAAAAATCGATTTTATTCTGGTCAAAAATTCGGGAATGGGCGGAGCTTAGGTCCTGCATCCCTAATTTCTGGCCCATTCTTGCGATTTTCTATGAATTTTGACCACACAACAATCGCATAAAACAATGCTTTTTTTCAAGTATTAGGTGCAAAATATTTAATGTAAAATTCACAGAATATCGACAGGGTTACTGTAGAGGAGGAAGTGTGCAGTGTGTTTGCAGACCAGCCACATCATGATGCATCACACTACCCGCGCAAAAGTTTTTTGTCTTGAACTTTTTTTTGAAAATCGAAAAAATAGGCCTAAAAATTACAGCAATAAACGTTCCTTTAAATGTGCATTCAAAACCGGGCCTAAGCTCCGCCCACTCTCGAATTATTGGCTTTCGACTCACTCAAAAGTGGCGGTTCCGAAATATTCCACTGTCACTTGTGACTTCATTTCGCTCCT</canonical>
            <polymorphic>TGCTAGTAATCTGATGATATGGCTCCATTGTTGTTGTTCCATTTTCATAAATATAGGTCAAGGCGAGAAGATCTTCGTTCAGATTGAGTTGAAAAATCGATTCATTTAAATAGTGACTCCAGAAGTCAATAGCAACCCATCTGAAGAAATCTCTAAAATCTAAAAACTCCGATCTGAGAACTCACTTAAAATCAGTACCGTTCTTGTCTTGAGACATTCGAATATCAAAAACTAGGTCAAGACCATTATAATAATCCCAAAAAGAATCAGAAACTAAATATGTGTAGTTTGACCCCAGAGACCTTCTCGGCGCTTCAATATTTTCAGAATTAAAATGGAGTTTTGGCATTGCCTCCGGTTCCAGTTTTATAGTCTCAAAACCGTAATCCGTCATCCCAATGCAATGTTTCGAGTGCTCCACATTGCTCACGACTATATTTTCTACGGAAATTAGGTCATTTCCGATATACGGATTGCCTGTGGAGGATATTGAAGATTTKTCATCGTTGTAGCGTTCAAAAACCTTGATCTTCTCGTCAAGGAAGCTAAAAATCGATTTTATTCTGGTCAAAAATTCGGGAATGGGCGGAGCTTAGGTCCTGCATCCCTAATTTCTGGCCCATTCTTGCGATTTTCTATGAATTTTGACCACACAACAATCGCATAAAACAATGCTTTTTTTCAAGTATTAGGTGCAAAATATTTAATGTAAAATTCACAGAATATCGACAGGGTTACTGTAGAGGAGGAAGTGTGCAGTGTGTTTGCAGACCAGCCACATCATGATGCATCACACTACCCGCGCAAAAGTTTTTTGTCTTGAACTTTTTTTTGAAAATCGAAAAAATAGGCCTAAAAATTACAGCAATAAACGTTCCTTTAAATGTGCATTCAAAACCGGGCCTAAGCTCCGCCCACTCTCGAATTATTGGCTTTCGACTCACTCAAAAGTGGCGGTTCCGAAATATTCCACTGTCACTTGTGACTTCATTTCGCTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCTACGGAAATTAGGTCAT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTTTATGCGATTGTTGT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCTACGGAAATTAGGTCATTTCCGATATACGGATTGCCTGTGGAGGATATTGAAGATTTTTCATCGTTGTAGCGTTCAAAAACCTTGATCTTCTCGTCAAGGAAGCTAAAAATCGATTTTATTCTGGTCAAAAATTCGGGAATGGGCGGAGCTTAGGTCCTGCATCCCTAATTTCTGGCCCATTCTTGCGATTTTCTATGAATTTTGACCACACAACAATCGCATAAAACAAT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCTACGGAAATTAGGTCATTTCCGATATACGGATTGCCTGTGGAGGATATTGAAGATTTKTCATCGTTGTAGCGTTCAAAAACCTTGATCTTCTCGTCAAGGAAGCTAAAAATCGATTTTATTCTGGTCAAAAATTCGGGAATGGGCGGAGCTTAGGTCCTGCATCCCTAATTTCTGGCCCATTCTTGCGATTTTCTATGAATTTTGACCACACAACAATCGCATAAAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6213</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>283524</contig_pos>
        <strand>+</strand>
        <context>CTTGATCTTC[C/T]CGTCAAGGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGATATTGAAGATTTTTCATCGTTGTAGCGTTCAAAAACCTTGATCTTC</left_flank>
        <right_flank>CGTCAAGGAAGCTAAAAATCGATTTTATTCTGGTCAAAAATTCGGGAATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTCCATTTTCATAAATATAGGTCAAGGCGAGAAGATCTTCGTTCAGATTGAGTTGAAAAATCGATTCATTTAAATAGTGACTCCAGAAGTCAATAGCAACCCATCTGAAGAAATCTCTAAAATCTAAAAACTCCGATCTGAGAACTCACTTAAAATCAGTACCGTTCTTGTCTTGAGACATTCGAATATCAAAAACTAGGTCAAGACCATTATAATAATCCCAAAAAGAATCAGAAACTAAATATGTGTAGTTTGACCCCAGAGACCTTCTCGGCGCTTCAATATTTTCAGAATTAAAATGGAGTTTTGGCATTGCCTCCGGTTCCAGTTTTATAGTCTCAAAACCGTAATCCGTCATCCCAATGCAATGTTTCGAGTGCTCCACATTGCTCACGACTATATTTTCTACGGAAATTAGGTCATTTCCGATATACGGATTGCCTGTGGAGGATATTGAAGATTTTTCATCGTTGTAGCGTTCAAAAACCTTGATCTTCTCGTCAAGGAAGCTAAAAATCGATTTTATTCTGGTCAAAAATTCGGGAATGGGCGGAGCTTAGGTCCTGCATCCCTAATTTCTGGCCCATTCTTGCGATTTTCTATGAATTTTGACCACACAACAATCGCATAAAACAATGCTTTTTTTCAAGTATTAGGTGCAAAATATTTAATGTAAAATTCACAGAATATCGACAGGGTTACTGTAGAGGAGGAAGTGTGCAGTGTGTTTGCAGACCAGCCACATCATGATGCATCACACTACCCGCGCAAAAGTTTTTTGTCTTGAACTTTTTTTTGAAAATCGAAAAAATAGGCCTAAAAATTACAGCAATAAACGTTCCTTTAAATGTGCATTCAAAACCGGGCCTAAGCTCCGCCCACTCTCGAATTATTGGCTTTCGACTCACTCAAAAGTGGCGGTTCCGAAATATTCCACTGTCACTTGTGACTTCATTTCGCTCCTTGCAAAGATAATTTCTTTTTTTTCGCCCTTCAGA</canonical>
            <polymorphic>TGTTCCATTTTCATAAATATAGGTCAAGGCGAGAAGATCTTCGTTCAGATTGAGTTGAAAAATCGATTCATTTAAATAGTGACTCCAGAAGTCAATAGCAACCCATCTGAAGAAATCTCTAAAATCTAAAAACTCCGATCTGAGAACTCACTTAAAATCAGTACCGTTCTTGTCTTGAGACATTCGAATATCAAAAACTAGGTCAAGACCATTATAATAATCCCAAAAAGAATCAGAAACTAAATATGTGTAGTTTGACCCCAGAGACCTTCTCGGCGCTTCAATATTTTCAGAATTAAAATGGAGTTTTGGCATTGCCTCCGGTTCCAGTTTTATAGTCTCAAAACCGTAATCCGTCATCCCAATGCAATGTTTCGAGTGCTCCACATTGCTCACGACTATATTTTCTACGGAAATTAGGTCATTTCCGATATACGGATTGCCTGTGGAGGATATTGAAGATTTTTCATCGTTGTAGCGTTCAAAAACCTTGATCTTCYCGTCAAGGAAGCTAAAAATCGATTTTATTCTGGTCAAAAATTCGGGAATGGGCGGAGCTTAGGTCCTGCATCCCTAATTTCTGGCCCATTCTTGCGATTTTCTATGAATTTTGACCACACAACAATCGCATAAAACAATGCTTTTTTTCAAGTATTAGGTGCAAAATATTTAATGTAAAATTCACAGAATATCGACAGGGTTACTGTAGAGGAGGAAGTGTGCAGTGTGTTTGCAGACCAGCCACATCATGATGCATCACACTACCCGCGCAAAAGTTTTTTGTCTTGAACTTTTTTTTGAAAATCGAAAAAATAGGCCTAAAAATTACAGCAATAAACGTTCCTTTAAATGTGCATTCAAAACCGGGCCTAAGCTCCGCCCACTCTCGAATTATTGGCTTTCGACTCACTCAAAAGTGGCGGTTCCGAAATATTCCACTGTCACTTGTGACTTCATTTCGCTCCTTGCAAAGATAATTTCTTTTTTTTCGCCCTTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCTACGGAAATTAGGTCAT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTTTATGCGATTGTTGT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCTACGGAAATTAGGTCATTTCCGATATACGGATTGCCTGTGGAGGATATTGAAGATTTTTCATCGTTGTAGCGTTCAAAAACCTTGATCTTCTCGTCAAGGAAGCTAAAAATCGATTTTATTCTGGTCAAAAATTCGGGAATGGGCGGAGCTTAGGTCCTGCATCCCTAATTTCTGGCCCATTCTTGCGATTTTCTATGAATTTTGACCACACAACAATCGCATAAAACAAT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCTACGGAAATTAGGTCATTTCCGATATACGGATTGCCTGTGGAGGATATTGAAGATTTTTCATCGTTGTAGCGTTCAAAAACCTTGATCTTCYCGTCAAGGAAGCTAAAAATCGATTTTATTCTGGTCAAAAATTCGGGAATGGGCGGAGCTTAGGTCCTGCATCCCTAATTTCTGGCCCATTCTTGCGATTTTCTATGAATTTTGACCACACAACAATCGCATAAAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6233</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>283568</contig_pos>
        <strand></strand>
        <context>tcaaaaattc[G/T]ggaatgggcg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATCTTCTCGTCAAGGAAGCTAAAAATCGATTTTATTCTGGTCAAAAATTC</left_flank>
        <right_flank>GGAATGGGCGGAGCTTAGGTCCTGCATCCCTAATTTCTGGCCCATTCTTG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGATTGAGTTGAAAAATCGATTCATTTAAATAGTGACTCCAGAAGTCAATAGCAACCCATCTGAAGAAATCTCTAAAATCTAAAAACTCCGATCTGAGAACTCACTTAAAATCAGTACCGTTCTTGTCTTGAGACATTCGAATATCAAAAACTAGGTCAAGACCATTATAATAATCCCAAAAAGAATCAGAAACTAAATATGTGTAGTTTGACCCCAGAGACCTTCTCGGCGCTTCAATATTTTCAGAATTAAAATGGAGTTTTGGCATTGCCTCCGGTTCCAGTTTTATAGTCTCAAAACCGTAATCCGTCATCCCAATGCAATGTTTCGAGTGCTCCACATTGCTCACGACTATATTTTCTACGGAAATTAGGTCATTTCCGATATACGGATTGCCTGTGGAGGATATTGAAGATTTTTCATCGTTGTAGCGTTCAAAAACCTTGATCTTCTCGTCAAGGAAGCTAAAAATCGATTTTATTCTGGTCAAAAATTCGGGAATGGGCGGAGCTTAGGTCCTGCATCCCTAATTTCTGGCCCATTCTTGCGATTTTCTATGAATTTTGACCACACAACAATCGCATAAAACAATGCTTTTTTTCAAGTATTAGGTGCAAAATATTTAATGTAAAATTCACAGAATATCGACAGGGTTACTGTAGAGGAGGAAGTGTGCAGTGTGTTTGCAGACCAGCCACATCATGATGCATCACACTACCCGCGCAAAAGTTTTTTGTCTTGAACTTTTTTTTGAAAATCGAAAAAATAGGCCTAAAAATTACAGCAATAAACGTTCCTTTAAATGTGCATTCAAAACCGGGCCTAAGCTCCGCCCACTCTCGAATTATTGGCTTTCGACTCACTCAAAAGTGGCGGTTCCGAAATATTCCACTGTCACTTGTGACTTCATTTCGCTCCTTGCAAAGATAATTTCTTTTTTTTCGCCCTTCAGACCTGTGATTTTACATTGCGGAGACGTGTGTGGTATGAAGCAGTC</canonical>
            <polymorphic>TCAGATTGAGTTGAAAAATCGATTCATTTAAATAGTGACTCCAGAAGTCAATAGCAACCCATCTGAAGAAATCTCTAAAATCTAAAAACTCCGATCTGAGAACTCACTTAAAATCAGTACCGTTCTTGTCTTGAGACATTCGAATATCAAAAACTAGGTCAAGACCATTATAATAATCCCAAAAAGAATCAGAAACTAAATATGTGTAGTTTGACCCCAGAGACCTTCTCGGCGCTTCAATATTTTCAGAATTAAAATGGAGTTTTGGCATTGCCTCCGGTTCCAGTTTTATAGTCTCAAAACCGTAATCCGTCATCCCAATGCAATGTTTCGAGTGCTCCACATTGCTCACGACTATATTTTCTACGGAAATTAGGTCATTTCCGATATACGGATTGCCTGTGGAGGATATTGAAGATTTTTCATCGTTGTAGCGTTCAAAAACCTTGATCTTCTCGTCAAGGAAGCTAAAAATCGATTTTATTCTGGTCAAAAATTCKGGAATGGGCGGAGCTTAGGTCCTGCATCCCTAATTTCTGGCCCATTCTTGCGATTTTCTATGAATTTTGACCACACAACAATCGCATAAAACAATGCTTTTTTTCAAGTATTAGGTGCAAAATATTTAATGTAAAATTCACAGAATATCGACAGGGTTACTGTAGAGGAGGAAGTGTGCAGTGTGTTTGCAGACCAGCCACATCATGATGCATCACACTACCCGCGCAAAAGTTTTTTGTCTTGAACTTTTTTTTGAAAATCGAAAAAATAGGCCTAAAAATTACAGCAATAAACGTTCCTTTAAATGTGCATTCAAAACCGGGCCTAAGCTCCGCCCACTCTCGAATTATTGGCTTTCGACTCACTCAAAAGTGGCGGTTCCGAAATATTCCACTGTCACTTGTGACTTCATTTCGCTCCTTGCAAAGATAATTTCTTTTTTTTCGCCCTTCAGACCTGTGATTTTACATTGCGGAGACGTGTGTGGTATGAAGCAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGTAGCGTTCAAAAACCTT</pcr_primer_p1>
		<pcr_primer_p2>ACACTTCCTCCTCTACAGTAACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTGTAGCGTTCAAAAACCTTGATCTTCTCGTCAAGGAAGCTAAAAATCGATTTTATTCTGGTCAAAAATTCGGGAATGGGCGGAGCTTAGGTCCTGCATCCCTAATTTCTGGCCCATTCTTGCGATTTTCTATGAATTTTGACCACACAACAATCGCATAAAACAATGCTTTTTTTCAAGTATTAGGTGCAAAATATTTAATGTAAAATTCACAGAATATCGACAGGGTTACTGTAGAGGAGGAAGTGT</canonical_amplicon>
		<polymorphic_amplicon>GTTGTAGCGTTCAAAAACCTTGATCTTCTCGTCAAGGAAGCTAAAAATCGATTTTATTCTGGTCAAAAATTCKGGAATGGGCGGAGCTTAGGTCCTGCATCCCTAATTTCTGGCCCATTCTTGCGATTTTCTATGAATTTTGACCACACAACAATCGCATAAAACAATGCTTTTTTTCAAGTATTAGGTGCAAAATATTTAATGTAAAATTCACAGAATATCGACAGGGTTACTGTAGAGGAGGAAGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6249</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>283591</contig_pos>
        <strand>+</strand>
        <context>gcttaggtcc[G/T]GCATCCCTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATCGATTTTATTCTGGTCAAAAATTCGGGAATGGGCGGAGCTTAGGTCC</left_flank>
        <right_flank>GCATCCCTAATTTCTGGCCCATTCTTGCGATTTTCTATGAATTTTGACCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATTTAAATAGTGACTCCAGAAGTCAATAGCAACCCATCTGAAGAAATCTCTAAAATCTAAAAACTCCGATCTGAGAACTCACTTAAAATCAGTACCGTTCTTGTCTTGAGACATTCGAATATCAAAAACTAGGTCAAGACCATTATAATAATCCCAAAAAGAATCAGAAACTAAATATGTGTAGTTTGACCCCAGAGACCTTCTCGGCGCTTCAATATTTTCAGAATTAAAATGGAGTTTTGGCATTGCCTCCGGTTCCAGTTTTATAGTCTCAAAACCGTAATCCGTCATCCCAATGCAATGTTTCGAGTGCTCCACATTGCTCACGACTATATTTTCTACGGAAATTAGGTCATTTCCGATATACGGATTGCCTGTGGAGGATATTGAAGATTTTTCATCGTTGTAGCGTTCAAAAACCTTGATCTTCTCGTCAAGGAAGCTAAAAATCGATTTTATTCTGGTCAAAAATTCGGGAATGGGCGGAGCTTAGGTCCTGCATCCCTAATTTCTGGCCCATTCTTGCGATTTTCTATGAATTTTGACCACACAACAATCGCATAAAACAATGCTTTTTTTCAAGTATTAGGTGCAAAATATTTAATGTAAAATTCACAGAATATCGACAGGGTTACTGTAGAGGAGGAAGTGTGCAGTGTGTTTGCAGACCAGCCACATCATGATGCATCACACTACCCGCGCAAAAGTTTTTTGTCTTGAACTTTTTTTTGAAAATCGAAAAAATAGGCCTAAAAATTACAGCAATAAACGTTCCTTTAAATGTGCATTCAAAACCGGGCCTAAGCTCCGCCCACTCTCGAATTATTGGCTTTCGACTCACTCAAAAGTGGCGGTTCCGAAATATTCCACTGTCACTTGTGACTTCATTTCGCTCCTTGCAAAGATAATTTCTTTTTTTTCGCCCTTCAGACCTGTGATTTTACATTGCGGAGACGTGTGTGGTATGAAGCAGTCCATTGTGACGGTGTGATTTGTGG</canonical>
            <polymorphic>TCATTTAAATAGTGACTCCAGAAGTCAATAGCAACCCATCTGAAGAAATCTCTAAAATCTAAAAACTCCGATCTGAGAACTCACTTAAAATCAGTACCGTTCTTGTCTTGAGACATTCGAATATCAAAAACTAGGTCAAGACCATTATAATAATCCCAAAAAGAATCAGAAACTAAATATGTGTAGTTTGACCCCAGAGACCTTCTCGGCGCTTCAATATTTTCAGAATTAAAATGGAGTTTTGGCATTGCCTCCGGTTCCAGTTTTATAGTCTCAAAACCGTAATCCGTCATCCCAATGCAATGTTTCGAGTGCTCCACATTGCTCACGACTATATTTTCTACGGAAATTAGGTCATTTCCGATATACGGATTGCCTGTGGAGGATATTGAAGATTTTTCATCGTTGTAGCGTTCAAAAACCTTGATCTTCTCGTCAAGGAAGCTAAAAATCGATTTTATTCTGGTCAAAAATTCGGGAATGGGCGGAGCTTAGGTCCKGCATCCCTAATTTCTGGCCCATTCTTGCGATTTTCTATGAATTTTGACCACACAACAATCGCATAAAACAATGCTTTTTTTCAAGTATTAGGTGCAAAATATTTAATGTAAAATTCACAGAATATCGACAGGGTTACTGTAGAGGAGGAAGTGTGCAGTGTGTTTGCAGACCAGCCACATCATGATGCATCACACTACCCGCGCAAAAGTTTTTTGTCTTGAACTTTTTTTTGAAAATCGAAAAAATAGGCCTAAAAATTACAGCAATAAACGTTCCTTTAAATGTGCATTCAAAACCGGGCCTAAGCTCCGCCCACTCTCGAATTATTGGCTTTCGACTCACTCAAAAGTGGCGGTTCCGAAATATTCCACTGTCACTTGTGACTTCATTTCGCTCCTTGCAAAGATAATTTCTTTTTTTTCGCCCTTCAGACCTGTGATTTTACATTGCGGAGACGTGTGTGGTATGAAGCAGTCCATTGTGACGGTGTGATTTGTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>300 201 114 100 99 93 61 21 11</canonical_bands>
                <polymorphic_bands>300 294 114 100 99 61 21 11</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AGGWCCT</site>
                <isoschizomers>
                    <enzyme>Sse8647I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGTAGCGTTCAAAAACCTT</pcr_primer_p1>
		<pcr_primer_p2>ACACTTCCTCCTCTACAGTAACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTGTAGCGTTCAAAAACCTTGATCTTCTCGTCAAGGAAGCTAAAAATCGATTTTATTCTGGTCAAAAATTCGGGAATGGGCGGAGCTTAGGTCCTGCATCCCTAATTTCTGGCCCATTCTTGCGATTTTCTATGAATTTTGACCACACAACAATCGCATAAAACAATGCTTTTTTTCAAGTATTAGGTGCAAAATATTTAATGTAAAATTCACAGAATATCGACAGGGTTACTGTAGAGGAGGAAGTGT</canonical_amplicon>
		<polymorphic_amplicon>GTTGTAGCGTTCAAAAACCTTGATCTTCTCGTCAAGGAAGCTAAAAATCGATTTTATTCTGGTCAAAAATTCGGGAATGGGCGGAGCTTAGGTCCKGCATCCCTAATTTCTGGCCCATTCTTGCGATTTTCTATGAATTTTGACCACACAACAATCGCATAAAACAATGCTTTTTTTCAAGTATTAGGTGCAAAATATTTAATGTAAAATTCACAGAATATCGACAGGGTTACTGTAGAGGAGGAAGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6250</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>283615</contig_pos>
        <strand>+</strand>
        <context>CTGGCCCATT[C/T]TTGCGATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCGGGAATGGGCGGAGCTTAGGTCCTGCATCCCTAATTTCTGGCCCATT</left_flank>
        <right_flank>TTGCGATTTTCTATGAATTTTGACCACACAACAATCGCATAAAACAATGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAATAGCAACCCATCTGAAGAAATCTCTAAAATCTAAAAACTCCGATCTGAGAACTCACTTAAAATCAGTACCGTTCTTGTCTTGAGACATTCGAATATCAAAAACTAGGTCAAGACCATTATAATAATCCCAAAAAGAATCAGAAACTAAATATGTGTAGTTTGACCCCAGAGACCTTCTCGGCGCTTCAATATTTTCAGAATTAAAATGGAGTTTTGGCATTGCCTCCGGTTCCAGTTTTATAGTCTCAAAACCGTAATCCGTCATCCCAATGCAATGTTTCGAGTGCTCCACATTGCTCACGACTATATTTTCTACGGAAATTAGGTCATTTCCGATATACGGATTGCCTGTGGAGGATATTGAAGATTTTTCATCGTTGTAGCGTTCAAAAACCTTGATCTTCTCGTCAAGGAAGCTAAAAATCGATTTTATTCTGGTCAAAAATTCGGGAATGGGCGGAGCTTAGGTCCTGCATCCCTAATTTCTGGCCCATTCTTGCGATTTTCTATGAATTTTGACCACACAACAATCGCATAAAACAATGCTTTTTTTCAAGTATTAGGTGCAAAATATTTAATGTAAAATTCACAGAATATCGACAGGGTTACTGTAGAGGAGGAAGTGTGCAGTGTGTTTGCAGACCAGCCACATCATGATGCATCACACTACCCGCGCAAAAGTTTTTTGTCTTGAACTTTTTTTTGAAAATCGAAAAAATAGGCCTAAAAATTACAGCAATAAACGTTCCTTTAAATGTGCATTCAAAACCGGGCCTAAGCTCCGCCCACTCTCGAATTATTGGCTTTCGACTCACTCAAAAGTGGCGGTTCCGAAATATTCCACTGTCACTTGTGACTTCATTTCGCTCCTTGCAAAGATAATTTCTTTTTTTTCGCCCTTCAGACCTGTGATTTTACATTGCGGAGACGTGTGTGGTATGAAGCAGTCCATTGTGACGGTGTGATTTGTGGAATTTCCGATTTTGATGAATCCAT</canonical>
            <polymorphic>TCAATAGCAACCCATCTGAAGAAATCTCTAAAATCTAAAAACTCCGATCTGAGAACTCACTTAAAATCAGTACCGTTCTTGTCTTGAGACATTCGAATATCAAAAACTAGGTCAAGACCATTATAATAATCCCAAAAAGAATCAGAAACTAAATATGTGTAGTTTGACCCCAGAGACCTTCTCGGCGCTTCAATATTTTCAGAATTAAAATGGAGTTTTGGCATTGCCTCCGGTTCCAGTTTTATAGTCTCAAAACCGTAATCCGTCATCCCAATGCAATGTTTCGAGTGCTCCACATTGCTCACGACTATATTTTCTACGGAAATTAGGTCATTTCCGATATACGGATTGCCTGTGGAGGATATTGAAGATTTTTCATCGTTGTAGCGTTCAAAAACCTTGATCTTCTCGTCAAGGAAGCTAAAAATCGATTTTATTCTGGTCAAAAATTCGGGAATGGGCGGAGCTTAGGTCCTGCATCCCTAATTTCTGGCCCATTYTTGCGATTTTCTATGAATTTTGACCACACAACAATCGCATAAAACAATGCTTTTTTTCAAGTATTAGGTGCAAAATATTTAATGTAAAATTCACAGAATATCGACAGGGTTACTGTAGAGGAGGAAGTGTGCAGTGTGTTTGCAGACCAGCCACATCATGATGCATCACACTACCCGCGCAAAAGTTTTTTGTCTTGAACTTTTTTTTGAAAATCGAAAAAATAGGCCTAAAAATTACAGCAATAAACGTTCCTTTAAATGTGCATTCAAAACCGGGCCTAAGCTCCGCCCACTCTCGAATTATTGGCTTTCGACTCACTCAAAAGTGGCGGTTCCGAAATATTCCACTGTCACTTGTGACTTCATTTCGCTCCTTGCAAAGATAATTTCTTTTTTTTCGCCCTTCAGACCTGTGATTTTACATTGCGGAGACGTGTGTGGTATGAAGCAGTCCATTGTGACGGTGTGATTTGTGGAATTTCCGATTTTGATGAATCCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGTAGCGTTCAAAAACCTT</pcr_primer_p1>
		<pcr_primer_p2>ACACTTCCTCCTCTACAGTAACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTGTAGCGTTCAAAAACCTTGATCTTCTCGTCAAGGAAGCTAAAAATCGATTTTATTCTGGTCAAAAATTCGGGAATGGGCGGAGCTTAGGTCCTGCATCCCTAATTTCTGGCCCATTCTTGCGATTTTCTATGAATTTTGACCACACAACAATCGCATAAAACAATGCTTTTTTTCAAGTATTAGGTGCAAAATATTTAATGTAAAATTCACAGAATATCGACAGGGTTACTGTAGAGGAGGAAGTGT</canonical_amplicon>
		<polymorphic_amplicon>GTTGTAGCGTTCAAAAACCTTGATCTTCTCGTCAAGGAAGCTAAAAATCGATTTTATTCTGGTCAAAAATTCGGGAATGGGCGGAGCTTAGGTCCTGCATCCCTAATTTCTGGCCCATTYTTGCGATTTTCTATGAATTTTGACCACACAACAATCGCATAAAACAATGCTTTTTTTCAAGTATTAGGTGCAAAATATTTAATGTAAAATTCACAGAATATCGACAGGGTTACTGTAGAGGAGGAAGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6251</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>285553</contig_pos>
        <strand>+</strand>
        <context>TATTCTAGAT[A/G]ATTCTTATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGAAGAAAGTCTTTGAAAGTGAGGTTTTCTACCAAATTATTCTAGAT</left_flank>
        <right_flank>ATTCTTATTTCCAGAAACTCCCATGTCATCGCTCAACAACGTTCTCGTCG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATTAAAACCACTTGGCAGTGTGCAGGTGCGAGCGGTATCGTCAAAGTATCCGCGTCCAACTCCCAGACATTTCAAGTGAGATTCTCACCCTTTTTTCTATTTTAGAAATAATGTTTTTTTCAGACGACGATTATTCGAGGCGGCACTTCAACCAGAGCTTCCACCAACAGTCGCCATGTGCATGCCACCAGGCCTAGTCAAGCGACAGCACACTGAAAAATCTAAAGAAGTGAGTATCCTGCTCAAAAATCGAAGTAAACCATTTAATCTTCCAGTATTCCGATGTAGAACTAGCTCTGGCGAATCTAGTACGCAGCTGGATGGTAAAGGAGGAGTTTCGTGTGTTGGCAGTGTGCCAATTCTCGCCAGTTCCCGGTAGAACGCTGTGGTTCGCAAAGAACCAGCTGAGGTCCAAGAATATCGAGTTTCGAAGCTATGGAAACAAGATTTTGAAGAAAGTCTTTGAAAGTGAGGTTTTCTACCAAATTATTCTAGATGATTCTTATTTCCAGAAACTCCCATGTCATCGCTCAACAACGTTCTCGTCGGCTCCAACGCTATTCTCCTTGCCAAAGATATCTCTGCAATCAAGACTATCCTTCAAGAAACCGACAAGTTGAATTGGGTCGAACCCCTTGTAATGATGGCTGATGGAAGAATAGTGGATATGGTTCAAGCTCGTGACCTGGCCAAACTCTCCTCCCTTGAAGATCTTCGAGCGCATACTGTACAGATTCTCGGGCAACAAGTGGCTCAAATCACCATCTCGTTGGACACAGCCACCCGACACCTTCCGTCTCTTCTCGATGCTTATGCTTCTAGCAAGCAGGAGAATCAGAATTAACTTTTTTATTAGAGTAGAAGATTTGTTAACAGAAATTGTTTGTTATTTTTAAATATAAATACAAAAAAGGATGATTTAGACCCGAATCCAGTAACAATCAAAGGCAAAAAAACAACTAAAACATGATATCCTATTTGAAAAAATCTGAACATAT</canonical>
            <polymorphic>TCATTAAAACCACTTGGCAGTGTGCAGGTGCGAGCGGTATCGTCAAAGTATCCGCGTCCAACTCCCAGACATTTCAAGTGAGATTCTCACCCTTTTTTCTATTTTAGAAATAATGTTTTTTTCAGACGACGATTATTCGAGGCGGCACTTCAACCAGAGCTTCCACCAACAGTCGCCATGTGCATGCCACCAGGCCTAGTCAAGCGACAGCACACTGAAAAATCTAAAGAAGTGAGTATCCTGCTCAAAAATCGAAGTAAACCATTTAATCTTCCAGTATTCCGATGTAGAACTAGCTCTGGCGAATCTAGTACGCAGCTGGATGGTAAAGGAGGAGTTTCGTGTGTTGGCAGTGTGCCAATTCTCGCCAGTTCCCGGTAGAACGCTGTGGTTCGCAAAGAACCAGCTGAGGTCCAAGAATATCGAGTTTCGAAGCTATGGAAACAAGATTTTGAAGAAAGTCTTTGAAAGTGAGGTTTTCTACCAAATTATTCTAGATRATTCTTATTTCCAGAAACTCCCATGTCATCGCTCAACAACGTTCTCGTCGGCTCCAACGCTATTCTCCTTGCCAAAGATATCTCTGCAATCAAGACTATCCTTCAAGAAACCGACAAGTTGAATTGGGTCGAACCCCTTGTAATGATGGCTGATGGAAGAATAGTGGATATGGTTCAAGCTCGTGACCTGGCCAAACTCTCCTCCCTTGAAGATCTTCGAGCGCATACTGTACAGATTCTCGGGCAACAAGTGGCTCAAATCACCATCTCGTTGGACACAGCCACCCGACACCTTCCGTCTCTTCTCGATGCTTATGCTTCTAGCAAGCAGGAGAATCAGAATTAACTTTTTTATTAGAGTAGAAGATTTGTTAACAGAAATTGTTTGTTATTTTTAAATATAAATACAAAAAAGGATGATTTAGACCCGAATCCAGTAACAATCAAAGGCAAAAAAACAACTAAAACATGATATCCTATTTGAAAAAATCTGAACATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>235 222 196 99 96 82 70</canonical_bands>
                <polymorphic_bands>431 222 99 96 82 70</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>235 222 196 99 96 82 70</canonical_bands>
                <polymorphic_bands>431 222 99 96 82 70</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATGGAAACAAGATTTTGAAGA</pcr_primer_p1>
		<pcr_primer_p2>GAGCTTGAACCATATCCACTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTATGGAAACAAGATTTTGAAGAAAGTCTTTGAAAGTGAGGTTTTCTACCAAATTATTCTAGATGATTCTTATTTCCAGAAACTCCCATGTCATCGCTCAACAACGTTCTCGTCGGCTCCAACGCTATTCTCCTTGCCAAAGATATCTCTGCAATCAAGACTATCCTTCAAGAAACCGACAAGTTGAATTGGGTCGAACCCCTTGTAATGATGGCTGATGGAAGAATAGTGGATATGGTTCAAGCTC</canonical_amplicon>
		<polymorphic_amplicon>CTATGGAAACAAGATTTTGAAGAAAGTCTTTGAAAGTGAGGTTTTCTACCAAATTATTCTAGATRATTCTTATTTCCAGAAACTCCCATGTCATCGCTCAACAACGTTCTCGTCGGCTCCAACGCTATTCTCCTTGCCAAAGATATCTCTGCAATCAAGACTATCCTTCAAGAAACCGACAAGTTGAATTGGGTCGAACCCCTTGTAATGATGGCTGATGGAAGAATAGTGGATATGGTTCAAGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6252</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>285247</contig_pos>
        <strand>+</strand>
        <context>ATGCCACCAG[G/T]CCTAGTCAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGCACTTCAACCAGAGCTTCCACCAACAGTCGCCATGTGCATGCCACCAG</left_flank>
        <right_flank>CCTAGTCAAGCGACAGCACACTGAAAAATCTAAAGAAGTGAGTATCCTGC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCCAGTTATCAGAACAATAGTGTGCAATACAGAATCTAATTAAAATTGATATATTGATAAGATTTTGTAAAAGGCTTCGCATTTTGTCTTTATGTTGGAAATTCGTTACAGAACCACGAATCAAGTTTTGAAAAACCGCGCAAAAAACTCTGCAAGTGCGCTCTGCAGATCACTTCGTGCACTCCTCTCGGACAACTTTCGCTGCCTATTTTTCTTTTTCAGATTTCTTTCACTGAATTCTCGCATATTTCACCCAATTTTCTGAGATTTTCTAACTTAATTTTTTTCCAGAATGTTAAACCTATCATTAAAACCACTTGGCAGTGTGCAGGTGCGAGCGGTATCGTCAAAGTATCCGCGTCCAACTCCCAGACATTTCAAGTGAGATTCTCACCCTTTTTTCTATTTTAGAAATAATGTTTTTTTCAGACGACGATTATTCGAGGCGGCACTTCAACCAGAGCTTCCACCAACAGTCGCCATGTGCATGCCACCAGGCCTAGTCAAGCGACAGCACACTGAAAAATCTAAAGAAGTGAGTATCCTGCTCAAAAATCGAAGTAAACCATTTAATCTTCCAGTATTCCGATGTAGAACTAGCTCTGGCGAATCTAGTACGCAGCTGGATGGTAAAGGAGGAGTTTCGTGTGTTGGCAGTGTGCCAATTCTCGCCAGTTCCCGGTAGAACGCTGTGGTTCGCAAAGAACCAGCTGAGGTCCAAGAATATCGAGTTTCGAAGCTATGGAAACAAGATTTTGAAGAAAGTCTTTGAAAGTGAGGTTTTCTACCAAATTATTCTAGATGATTCTTATTTCCAGAAACTCCCATGTCATCGCTCAACAACGTTCTCGTCGGCTCCAACGCTATTCTCCTTGCCAAAGATATCTCTGCAATCAAGACTATCCTTCAAGAAACCGACAAGTTGAATTGGGTCGAACCCCTTGTAATGATGGCTGATGGAAGAATAGTGGATATGGTTCAAGCTCGTGACCTGGCCA</canonical>
            <polymorphic>CTCCCAGTTATCAGAACAATAGTGTGCAATACAGAATCTAATTAAAATTGATATATTGATAAGATTTTGTAAAAGGCTTCGCATTTTGTCTTTATGTTGGAAATTCGTTACAGAACCACGAATCAAGTTTTGAAAAACCGCGCAAAAAACTCTGCAAGTGCGCTCTGCAGATCACTTCGTGCACTCCTCTCGGACAACTTTCGCTGCCTATTTTTCTTTTTCAGATTTCTTTCACTGAATTCTCGCATATTTCACCCAATTTTCTGAGATTTTCTAACTTAATTTTTTTCCAGAATGTTAAACCTATCATTAAAACCACTTGGCAGTGTGCAGGTGCGAGCGGTATCGTCAAAGTATCCGCGTCCAACTCCCAGACATTTCAAGTGAGATTCTCACCCTTTTTTCTATTTTAGAAATAATGTTTTTTTCAGACGACGATTATTCGAGGCGGCACTTCAACCAGAGCTTCCACCAACAGTCGCCATGTGCATGCCACCAGKCCTAGTCAAGCGACAGCACACTGAAAAATCTAAAGAAGTGAGTATCCTGCTCAAAAATCGAAGTAAACCATTTAATCTTCCAGTATTCCGATGTAGAACTAGCTCTGGCGAATCTAGTACGCAGCTGGATGGTAAAGGAGGAGTTTCGTGTGTTGGCAGTGTGCCAATTCTCGCCAGTTCCCGGTAGAACGCTGTGGTTCGCAAAGAACCAGCTGAGGTCCAAGAATATCGAGTTTCGAAGCTATGGAAACAAGATTTTGAAGAAAGTCTTTGAAAGTGAGGTTTTCTACCAAATTATTCTAGATGATTCTTATTTCCAGAAACTCCCATGTCATCGCTCAACAACGTTCTCGTCGGCTCCAACGCTATTCTCCTTGCCAAAGATATCTCTGCAATCAAGACTATCCTTCAAGAAACCGACAAGTTGAATTGGGTCGAACCCCTTGTAATGATGGCTGATGGAAGAATAGTGGATATGGTTCAAGCTCGTGACCTGGCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGGCCT</site>
                <isoschizomers>
                    <enzyme>AatI</enzyme>
                    <enzyme>Eco147I</enzyme>
                    <enzyme>PceI</enzyme>
                    <enzyme>SseBI</enzyme>
                    <enzyme>StuI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>497 313 184 6</canonical_bands>
                <polymorphic_bands>681 313 6</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>497 497 6</canonical_bands>
                <polymorphic_bands>994 6</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 497 3</canonical_bands>
                <polymorphic_bands>997 3</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>389 116 102 98 88 76 35 30 29 22 12 3</canonical_bands>
                <polymorphic_bands>389 137 116 98 88 76 30 29 22 12 3</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 497 3</canonical_bands>
                <polymorphic_bands>997 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTAAAACCACTTGGCAGTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTGAGCAGGATACTCACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTAAAACCACTTGGCAGTGTGCAGGTGCGAGCGGTATCGTCAAAGTATCCGCGTCCAACTCCCAGACATTTCAAGTGAGATTCTCACCCTTTTTTCTATTTTAGAAATAATGTTTTTTTCAGACGACGATTATTCGAGGCGGCACTTCAACCAGAGCTTCCACCAACAGTCGCCATGTGCATGCCACCAGGCCTAGTCAAGCGACAGCACACTGAAAAATCTAAAGAAGTGAGTATCCTGCTCAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATTAAAACCACTTGGCAGTGTGCAGGTGCGAGCGGTATCGTCAAAGTATCCGCGTCCAACTCCCAGACATTTCAAGTGAGATTCTCACCCTTTTTTCTATTTTAGAAATAATGTTTTTTTCAGACGACGATTATTCGAGGCGGCACTTCAACCAGAGCTTCCACCAACAGTCGCCATGTGCATGCCACCAGKCCTAGTCAAGCGACAGCACACTGAAAAATCTAAAGAAGTGAGTATCCTGCTCAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6253</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>318656</contig_pos>
        <strand>+</strand>
        <context>CCAAAACAAT[A/G]AAAGCAATGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAAAATAGGAAAAATATAGAAAAACATTCGTATGAAATTCCAAAACAAT</left_flank>
        <right_flank>AAAGCAATGCATTCCTTCTGTGTCATCGCTTTATTATCATATACTTTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTTGTCGTCCATAACAATCGTCATGGATTGCGCAGCAGTGATTGAGAGCGGCTGGAAATGGAAAAAAATAGTGAGAGAACAAAAAGTCAACCAATTACCTGCAAGAGTTGGGCAATCCTTCTGAACAACGCCATACGAAAAGTTCCTCGAGATGCCCTCGCTTCCACAATGCCAATTATTATAAGGAATCAGCATTGCGTTGGATGTAGAGCCTCCGGAGCCCAAAAACGGTGCCACGGACCGCTTCGTCCTCAACTCAAGACCACTGAACATGGGGATGGAGAAAACGAGAAGGAGTAGTGTGAAGGACATCCCCGTCTGTGCCTGTAAAAAACTCAGAATGGTGCGAGCGAAGGGGGAAACACAAAAAAAAAACTATAAAGAAAATACGATTTCGGAGAAGAAATAAACTGATGGAGAGGAAGAAAAATGGGGAAAAGTGAGGAGGGAAAATAGGAAAAATATAGAAAAACATTCGTATGAAATTCCAAAACAATGAAAGCAATGCATTCCTTCTGTGTCATCGCTTTATTATCATATACTTTTTTGCTATTTATTATTCAGGAAATTCCTATAAAAATGGTTTTTTTTTCATAGAAAATGAGAAAAAAAGCAAAAATGAAACAAATGGACTTGAGAAGGAGCAAACTGACCCAAACGACAAAATCACCTCATATCTGTTTGCACAGTTCAAGAAAAAACCTATTTTTTGTCTTGTATCGGCTACACGAGTGCCTCACTCCTCACACAATCTCTTACACACTCTCTCAGCACCTCGTATCCCACTTGGTAGTGCAATCGAGTAGTTTGACAGCTCGAAGAGCCCGTAAAATGGCCTGATCATCTGCAGCACCATCCTTTTCCTCCGCCTACGCCTTTTAAGAGATTTCCGCCTCTGGCGGTAAGCAACAAAGGCATGAAGAGGGGAATGTTTGAATTTAGGGATGGGGTGATGATGGTTGGGAGCGGGCAGGAAAAGTGGCGCGAGATTAAAGGAA</canonical>
            <polymorphic>GTCTTGTCGTCCATAACAATCGTCATGGATTGCGCAGCAGTGATTGAGAGCGGCTGGAAATGGAAAAAAATAGTGAGAGAACAAAAAGTCAACCAATTACCTGCAAGAGTTGGGCAATCCTTCTGAACAACGCCATACGAAAAGTTCCTCGAGATGCCCTCGCTTCCACAATGCCAATTATTATAAGGAATCAGCATTGCGTTGGATGTAGAGCCTCCGGAGCCCAAAAACGGTGCCACGGACCGCTTCGTCCTCAACTCAAGACCACTGAACATGGGGATGGAGAAAACGAGAAGGAGTAGTGTGAAGGACATCCCCGTCTGTGCCTGTAAAAAACTCAGAATGGTGCGAGCGAAGGGGGAAACACAAAAAAAAAACTATAAAGAAAATACGATTTCGGAGAAGAAATAAACTGATGGAGAGGAAGAAAAATGGGGAAAAGTGAGGAGGGAAAATAGGAAAAATATAGAAAAACATTCGTATGAAATTCCAAAACAATRAAAGCAATGCATTCCTTCTGTGTCATCGCTTTATTATCATATACTTTTTTGCTATTTATTATTCAGGAAATTCCTATAAAAATGGTTTTTTTTTCATAGAAAATGAGAAAAAAAGCAAAAATGAAACAAATGGACTTGAGAAGGAGCAAACTGACCCAAACGACAAAATCACCTCATATCTGTTTGCACAGTTCAAGAAAAAACCTATTTTTTGTCTTGTATCGGCTACACGAGTGCCTCACTCCTCACACAATCTCTTACACACTCTCTCAGCACCTCGTATCCCACTTGGTAGTGCAATCGAGTAGTTTGACAGCTCGAAGAGCCCGTAAAATGGCCTGATCATCTGCAGCACCATCCTTTTCCTCCGCCTACGCCTTTTAAGAGATTTCCGCCTCTGGCGGTAAGCAACAAAGGCATGAAGAGGGGAATGTTTGAATTTAGGGATGGGGTGATGATGGTTGGGAGCGGGCAGGAAAAGTGGCGCGAGATTAAAGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAGGGAAAATAGGAAAAATA</pcr_primer_p1>
		<pcr_primer_p2>GAACTGTGCAAACAGATATGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGAGGGAAAATAGGAAAAATATAGAAAAACATTCGTATGAAATTCCAAAACAATGAAAGCAATGCATTCCTTCTGTGTCATCGCTTTATTATCATATACTTTTTTGCTATTTATTATTCAGGAAATTCCTATAAAAATGGTTTTTTTTTCATAGAAAATGAGAAAAAAAGCAAAAATGAAACAAATGGACTTGAGAAGGAGCAAACTGACCCAAACGACAAAATCACCTCATATCTGTTTGCACAGTTC</canonical_amplicon>
		<polymorphic_amplicon>AGGAGGGAAAATAGGAAAAATATAGAAAAACATTCGTATGAAATTCCAAAACAATRAAAGCAATGCATTCCTTCTGTGTCATCGCTTTATTATCATATACTTTTTTGCTATTTATTATTCAGGAAATTCCTATAAAAATGGTTTTTTTTTCATAGAAAATGAGAAAAAAAGCAAAAATGAAACAAATGGACTTGAGAAGGAGCAAACTGACCCAAACGACAAAATCACCTCATATCTGTTTGCACAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6254</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>319410</contig_pos>
        <strand>+</strand>
        <context>GCACACAAAA[A/G]CAAAGTTAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATAATACGCATTCGTCGCGAACACAACTACGTAAAAATGCACACAAAA</left_flank>
        <right_flank>CAAAGTTAGATGTGCAGGACATATAGCAAATCCTACTCCCAATTACTGTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTTACACACTCTCTCAGCACCTCGTATCCCACTTGGTAGTGCAATCGAGTAGTTTGACAGCTCGAAGAGCCCGTAAAATGGCCTGATCATCTGCAGCACCATCCTTTTCCTCCGCCTACGCCTTTTAAGAGATTTCCGCCTCTGGCGGTAAGCAACAAAGGCATGAAGAGGGGAATGTTTGAATTTAGGGATGGGGTGATGATGGTTGGGAGCGGGCAGGAAAAGTGGCGCGAGATTAAAGGAATGAAGAATTACGGAGGAACGGTAGCAAAAGATTTTATCTGGAGACTTTAAAAAAGAAGCGAGGACGAAGACAGGAAGAAACTTCGTAAAAAGAAGAATGCATGAACTTTTTTTGAAAAGCATTTTTAATGTCTTCTGGAATGAATTCTGTGTATTTTTTAGTTTTTGTATGAAATGCACGGTGGATTTTCAGGTAATGTCGGAGAATAATACGCATTCGTCGCGAACACAACTACGTAAAAATGCACACAAAAACAAAGTTAGATGTGCAGGACATATAGCAAATCCTACTCCCAATTACTGTACTGAAAGCGCGAAGCTGACAATTTTGAATTTCCTGAGTTCTTTTTGAATAAAAATGTCGTTTCAAGAGTTTCGTTAGCTTTGATCATTGTTTTATGGCTCCCGCGAGAAAATGAAAGGCGCCAAAAAACCAAATTTGTCTCAAAATCATCATTTGGCTTTCGCTCTTGTCTCATTTTGTCTCAACCCTTCGCGAAGCCTTCGCCGTTTACAGATACTAACCTGTAACATCCTCATTCTGTGTCAATATGAGTGAGACGTCCGGAAGAAGCAACTCGAAGTTGTCCGACTCCTCGTCGGTCAGCGAGCAGCAGACCGCGGATCTCAGCATCTTCAGCGGATCCTTCGATGGAGGTTTGATTCTTTTTGCATTATCTCGAATTTCCGAATTTTTTCAGGAGTCTTCTCATCCAACATCCCAATGTTCAACTTCGCGGGACAAGGGAGTCAAA</canonical>
            <polymorphic>CTCTTACACACTCTCTCAGCACCTCGTATCCCACTTGGTAGTGCAATCGAGTAGTTTGACAGCTCGAAGAGCCCGTAAAATGGCCTGATCATCTGCAGCACCATCCTTTTCCTCCGCCTACGCCTTTTAAGAGATTTCCGCCTCTGGCGGTAAGCAACAAAGGCATGAAGAGGGGAATGTTTGAATTTAGGGATGGGGTGATGATGGTTGGGAGCGGGCAGGAAAAGTGGCGCGAGATTAAAGGAATGAAGAATTACGGAGGAACGGTAGCAAAAGATTTTATCTGGAGACTTTAAAAAAGAAGCGAGGACGAAGACAGGAAGAAACTTCGTAAAAAGAAGAATGCATGAACTTTTTTTGAAAAGCATTTTTAATGTCTTCTGGAATGAATTCTGTGTATTTTTTAGTTTTTGTATGAAATGCACGGTGGATTTTCAGGTAATGTCGGAGAATAATACGCATTCGTCGCGAACACAACTACGTAAAAATGCACACAAAARCAAAGTTAGATGTGCAGGACATATAGCAAATCCTACTCCCAATTACTGTACTGAAAGCGCGAAGCTGACAATTTTGAATTTCCTGAGTTCTTTTTGAATAAAAATGTCGTTTCAAGAGTTTCGTTAGCTTTGATCATTGTTTTATGGCTCCCGCGAGAAAATGAAAGGCGCCAAAAAACCAAATTTGTCTCAAAATCATCATTTGGCTTTCGCTCTTGTCTCATTTTGTCTCAACCCTTCGCGAAGCCTTCGCCGTTTACAGATACTAACCTGTAACATCCTCATTCTGTGTCAATATGAGTGAGACGTCCGGAAGAAGCAACTCGAAGTTGTCCGACTCCTCGTCGGTCAGCGAGCAGCAGACCGCGGATCTCAGCATCTTCAGCGGATCCTTCGATGGAGGTTTGATTCTTTTTGCATTATCTCGAATTTCCGAATTTTTTCAGGAGTCTTCTCATCCAACATCCCAATGTTCAACTTCGCGGGACAAGGGAGTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAATGAATTCTGTGTATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAAGCTAACGAAACTCTTGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGAATGAATTCTGTGTATTTTTTAGTTTTTGTATGAAATGCACGGTGGATTTTCAGGTAATGTCGGAGAATAATACGCATTCGTCGCGAACACAACTACGTAAAAATGCACACAAAAACAAAGTTAGATGTGCAGGACATATAGCAAATCCTACTCCCAATTACTGTACTGAAAGCGCGAAGCTGACAATTTTGAATTTCCTGAGTTCTTTTTGAATAAAAATGTCGTTTCAAGAGTTTCGTTAGCTTT</canonical_amplicon>
		<polymorphic_amplicon>TGGAATGAATTCTGTGTATTTTTTAGTTTTTGTATGAAATGCACGGTGGATTTTCAGGTAATGTCGGAGAATAATACGCATTCGTCGCGAACACAACTACGTAAAAATGCACACAAAARCAAAGTTAGATGTGCAGGACATATAGCAAATCCTACTCCCAATTACTGTACTGAAAGCGCGAAGCTGACAATTTTGAATTTCCTGAGTTCTTTTTGAATAAAAATGTCGTTTCAAGAGTTTCGTTAGCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6255</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>319179</contig_pos>
        <strand>+</strand>
        <context>GAGGAACGGT[A/T]GCAAAAGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGGAAAAGTGGCGCGAGATTAAAGGAATGAAGAATTACGGAGGAACGGT</left_flank>
        <right_flank>GCAAAAGATTTTATCTGGAGACTTTAAAAAAGAAGCGAGGACGAAGACAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCGCTTTATTATCATATACTTTTTTGCTATTTATTATTCAGGAAATTCCTATAAAAATGGTTTTTTTTTCATAGAAAATGAGAAAAAAAGCAAAAATGAAACAAATGGACTTGAGAAGGAGCAAACTGACCCAAACGACAAAATCACCTCATATCTGTTTGCACAGTTCAAGAAAAAACCTATTTTTTGTCTTGTATCGGCTACACGAGTGCCTCACTCCTCACACAATCTCTTACACACTCTCTCAGCACCTCGTATCCCACTTGGTAGTGCAATCGAGTAGTTTGACAGCTCGAAGAGCCCGTAAAATGGCCTGATCATCTGCAGCACCATCCTTTTCCTCCGCCTACGCCTTTTAAGAGATTTCCGCCTCTGGCGGTAAGCAACAAAGGCATGAAGAGGGGAATGTTTGAATTTAGGGATGGGGTGATGATGGTTGGGAGCGGGCAGGAAAAGTGGCGCGAGATTAAAGGAATGAAGAATTACGGAGGAACGGTAGCAAAAGATTTTATCTGGAGACTTTAAAAAAGAAGCGAGGACGAAGACAGGAAGAAACTTCGTAAAAAGAAGAATGCATGAACTTTTTTTGAAAAGCATTTTTAATGTCTTCTGGAATGAATTCTGTGTATTTTTTAGTTTTTGTATGAAATGCACGGTGGATTTTCAGGTAATGTCGGAGAATAATACGCATTCGTCGCGAACACAACTACGTAAAAATGCACACAAAAACAAAGTTAGATGTGCAGGACATATAGCAAATCCTACTCCCAATTACTGTACTGAAAGCGCGAAGCTGACAATTTTGAATTTCCTGAGTTCTTTTTGAATAAAAATGTCGTTTCAAGAGTTTCGTTAGCTTTGATCATTGTTTTATGGCTCCCGCGAGAAAATGAAAGGCGCCAAAAAACCAAATTTGTCTCAAAATCATCATTTGGCTTTCGCTCTTGTCTCATTTTGTCTCAACCCTTCGCGAAGCCTTCGCCGTTTACAGATACTAA</canonical>
            <polymorphic>CATCGCTTTATTATCATATACTTTTTTGCTATTTATTATTCAGGAAATTCCTATAAAAATGGTTTTTTTTTCATAGAAAATGAGAAAAAAAGCAAAAATGAAACAAATGGACTTGAGAAGGAGCAAACTGACCCAAACGACAAAATCACCTCATATCTGTTTGCACAGTTCAAGAAAAAACCTATTTTTTGTCTTGTATCGGCTACACGAGTGCCTCACTCCTCACACAATCTCTTACACACTCTCTCAGCACCTCGTATCCCACTTGGTAGTGCAATCGAGTAGTTTGACAGCTCGAAGAGCCCGTAAAATGGCCTGATCATCTGCAGCACCATCCTTTTCCTCCGCCTACGCCTTTTAAGAGATTTCCGCCTCTGGCGGTAAGCAACAAAGGCATGAAGAGGGGAATGTTTGAATTTAGGGATGGGGTGATGATGGTTGGGAGCGGGCAGGAAAAGTGGCGCGAGATTAAAGGAATGAAGAATTACGGAGGAACGGTWGCAAAAGATTTTATCTGGAGACTTTAAAAAAGAAGCGAGGACGAAGACAGGAAGAAACTTCGTAAAAAGAAGAATGCATGAACTTTTTTTGAAAAGCATTTTTAATGTCTTCTGGAATGAATTCTGTGTATTTTTTAGTTTTTGTATGAAATGCACGGTGGATTTTCAGGTAATGTCGGAGAATAATACGCATTCGTCGCGAACACAACTACGTAAAAATGCACACAAAAACAAAGTTAGATGTGCAGGACATATAGCAAATCCTACTCCCAATTACTGTACTGAAAGCGCGAAGCTGACAATTTTGAATTTCCTGAGTTCTTTTTGAATAAAAATGTCGTTTCAAGAGTTTCGTTAGCTTTGATCATTGTTTTATGGCTCCCGCGAGAAAATGAAAGGCGCCAAAAAACCAAATTTGTCTCAAAATCATCATTTGGCTTTCGCTCTTGTCTCATTTTGTCTCAACCCTTCGCGAAGCCTTCGCCGTTTACAGATACTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTACGCCTTTTAAGAGATTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTCATGCATTCTTCTTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>CCTACGCCTTTTAAGAGATTTCCGCCTCTGGCGGTAAGCAACAAAGGCATGAAGAGGGGAATGTTTGAATTTAGGGATGGGGTGATGATGGTTGGGAGCGGGCAGGAAAAGTGGCGCGAGATTAAAGGAATGAAGAATTACGGAGGAACGGTAGCAAAAGATTTTATCTGGAGACTTTAAAAAAGAAGCGAGGACGAAGACAGGAAGAAACTTCGTAAAAAGAAGAATGCATGAACTT</canonical_amplicon>
		<polymorphic_amplicon>CCTACGCCTTTTAAGAGATTTCCGCCTCTGGCGGTAAGCAACAAAGGCATGAAGAGGGGAATGTTTGAATTTAGGGATGGGGTGATGATGGTTGGGAGCGGGCAGGAAAAGTGGCGCGAGATTAAAGGAATGAAGAATTACGGAGGAACGGTWGCAAAAGATTTTATCTGGAGACTTTAAAAAAGAAGCGAGGACGAAGACAGGAAGAAACTTCGTAAAAAGAAGAATGCATGAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6256</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>353493</contig_pos>
        <strand>+</strand>
        <context>ATGKAAAAAA[A/T]ATTTCTGTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGGTTTATGTTGTTCATCTTGGTGAGTCTTCCAAAAGTCAATGAAAAAAA</left_flank>
        <right_flank>ATTTCTGTGGCGCATAGCTCAAAAAAAAATTCGCTGGAATTTTGGAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACATTCTTGAAATTTTTTTCAGCTTCCCTCTATCAGATCCTAGTACTTTTGCTTGATCTTTATCCAGGTTCTTTGAAAGCCGAAATTCTGAAATTCCGAAATTCCGAAATTCTCATATTCCCATATTCTGATATTCCGAGATTCTGAAATTCTGAGATTCTGAAATTCTGAGATTCTGAGGTTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTGAGGTTCTGAGATTCTGAAATTCTGAAATTCTGAAATTCTGAGATTCTGAAATTCACAGATTTTCAGATTCACAGATTTCTAAATTTCCTCTTATTTATTTCAGATTCTCCTACTTCTATTTTTTCCAAAAAAATCCAAAAAATCCCAATAATGTGCTTTTTTCCAGACCGATGAAGTCTCTTCTTGTCTCGCTTCTACTGGTTTATGTTGTTCATCTTGGTGAGTCTTCCAAAAGTCAATGAAAAAAAAATTTCTGTGGCGCATAGCTCAAAAAAAAATTCGCTGGAATTTTGGAAAATGGATTTCAGACTTTGACCCAATTTCCTCGTGGGATAATTATCACGAATTGGCATATATTTTCAAAGGGTTTAGATAAATGGATTACTGTATTAGGATCTAAAAATTACACACAACTTTTAGTTATGCGTTCCCTTAGCCAGGAAGTATAGTTCCCTTCCAAAACTGTACTGTCCACTCTCCTAATAAGCGTCTTCGCCTTTCCCTTACGCCATATAATTGCTCATCCTCTGAACCCTACCATCTCCTCGAGACTAGCCATTATCCCTCATTCTATTCAGCCCAATCGCAGCACGCATGTGTCGACCGACACATCCACTGTGTCTTTTGGTCGCAAGCCGGAGAATGTGAGGTGAATCCAAGATTCATGAAGAGACAATGTATGAAGGCGTGTGGGGTGAGTCTCAGGATTTCAGATTATAAAAAAAGTGAGGAAATTTTAGACATGTCCA</canonical>
            <polymorphic>TACATTCTTGAAATTTTTTTCAGCTTCCCTCTATCAGATCCTAGTACTTTTGCTTGATCTTTATCCAGGTTCTTTGAAAGCCGAAATTCTGAAATTCCGAAATTCCGAAATTCTCATATTCCCATATTCTGATATTCCGAGATTCTGAAATTCTGAGATTCTGAAATTCTGAGATTCTGAGGTTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTGAGGTTCTGAGATTCTGAAATTCTGAAATTCTGAAATTCTGAGATTCTGAAATTCACAGATTTTCAGATTCACAGATTTCTAAATTTCCTCTTATTTATTTCAGATTCTCCTACTTCTATTTTTTCCAAAAAAATCCAAAAAATCCCAATAATGTGCTTTTTTCCAGACCGATGAAGTCTCTTCTTGTCTCGCTTCTACTGGTTTATGTTGTTCATCTTGGTGAGTCTTCCAAAAGTCAATGAAAAAAAWATTTCTGTGGCGCATAGCTCAAAAAAAAATTCGCTGGAATTTTGGAAAATGGATTTCAGACTTTGACCCAATTTCCTCGTGGGATAATTATCACGAATTGGCATATATTTTCAAAGGGTTTAGATAAATGGATTACTGTATTAGGATCTAAAAATTACACACAACTTTTAGTTATGCGTTCCCTTAGCCAGGAAGTATAGTTCCCTTCCAAAACTGTACTGTCCACTCTCCTAATAAGCGTCTTCGCCTTTCCCTTACGCCATATAATTGCTCATCCTCTGAACCCTACCATCTCCTCGAGACTAGCCATTATCCCTCATTCTATTCAGCCCAATCGCAGCACGCATGTGTCGACCGACACATCCACTGTGTCTTTTGGTCGCAAGCCGGAGAATGTGAGGTGAATCCAAGATTCATGAAGAGACAATGTATGAAGGCGTGTGGGGTGAGTCTCAGGATTTCAGATTATAAAAAAAGTGAGGAAATTTTAGACATGTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>446 167 80 73 40 32 28 24 17 16 16 11 10 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>446 195 80 73 40 32 24 17 16 16 11 10 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>218 167 113 80 73 57 40 32 32 28 24 17 16 16 16 11 10 10 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>218 195 113 80 73 57 40 32 32 24 17 16 16 16 11 10 10 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTTCTTGTCTCGCTTCTACT</pcr_primer_p1>
		<pcr_primer_p2>CGCATAACTAAAAGTTGTGTGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTTCTTGTCTCGCTTCTACTGGTTTATGTTGTTCATCTTGGTGAGTCTTCCAAAAGTCAATGAAAAAAAAATTTCTGTGGCGCATAGCTCAAAAAAAAATTCGCTGGAATTTTGGAAAATGGATTTCAGACTTTGACCCAATTTCCTCGTGGGATAATTATCACGAATTGGCATATATTTTCAAAGGGTTTAGATAAATGGATTACTGTATTAGGATCTAAAAATTACACACAACTTTTAGTTATGCG</canonical_amplicon>
		<polymorphic_amplicon>CTCTTCTTGTCTCGCTTCTACTGGTTTATGTTGTTCATCTTGGTGAGTCTTCCAAAAGTCAATGAAAAAAAWATTTCTGTGGCGCATAGCTCAAAAAAAAATTCGCTGGAATTTTGGAAAATGGATTTCAGACTTTGACCCAATTTCCTCGTGGGATAATTATCACGAATTGGCATATATTTTCAAAGGGTTTAGATAAATGGATTACTGTATTAGGATCTAAAAATTACACACAACTTTTAGTTATGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6258</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>358343</contig_pos>
        <strand>+</strand>
        <context>CATTWAAAAA[A/G]ACTTAAAGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATGTATGTATCCAAAAAAAAGGAAGGTTTTAAAAACTTCATTTAAAAA</left_flank>
        <right_flank>ACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAAGCCTGTATTCTTTGTTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTGGAAACCCTACGTGACAAAACTCTTCCATTTTCTAGTGGCCAGAAGTGCCCGACCAGAATGTCCGTCAACGAATCGCTCAACTCTACCGTACTCCTGACGACGTGGATTTCTATGTTGGCGGAATTCTCGAACAACCAGCCGCAGGAAGTGTCGTCGGAGCCACGTTCGCCTGTGTCATCGGAAAACAATTCGAACGTCTTCGCGATGGAGACAGATTCTATTTTGAGAATCCAGGAGTATTCACATCTTCTCAATTGGCTGAACTGAAGAGGACCACACTTTCGTGGGTGTTATGTCAGACAGGGGATAAGTGAGTTTTTTGGGTTTGGGATCAGTCGAAAAAATCAAAAATGTAGAATCAGATGGAGGCATCATGTATGTATCATGTATCATGTATCATGTATGTAAAAAAATGTATGTATGTATGTATGTATGTATGTATATATGTATGTATCCAAAAAAAAGGAAGGTTTTAAAAACTTCATTTAAAAAGACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAAGCCTGTATTCTTTGTTTCTGAAGCTCAGAAATTCAGAAATTCAAAAAAATTTAAATTTTGCGTCATTTTTTTGTGTGCCCCAGTAGAAGGAAAAGCGAGGTCTAAACCTATTATATGAAACTAAAAACCGAAAAGTCTGAAAAAAAATTTCAGTCAAAAAAAAGCTGAATCTTTCACAAGTCAAAGCAAAAATTTCCCTGATTTTTTTTTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATATACAATACAATACAAATAGGCTTGTTAGGTTTGTAAGACTTATCATAAACTTGTATGCCTAGTACAGCCTTTCAGACTTATTATAGGCTTGTAGGCTTATTTTTTGACTTGTATGCTTTTTATAGTCTTTTAGGCTTTTTATAGGCTTGTAGGCTTTTTATAGACGTGTAGGCTTGTTATAGACTTGTTAGGAAACACCTAAATATTCTAAAATCA</canonical>
            <polymorphic>AAATTTGGAAACCCTACGTGACAAAACTCTTCCATTTTCTAGTGGCCAGAAGTGCCCGACCAGAATGTCCGTCAACGAATCGCTCAACTCTACCGTACTCCTGACGACGTGGATTTCTATGTTGGCGGAATTCTCGAACAACCAGCCGCAGGAAGTGTCGTCGGAGCCACGTTCGCCTGTGTCATCGGAAAACAATTCGAACGTCTTCGCGATGGAGACAGATTCTATTTTGAGAATCCAGGAGTATTCACATCTTCTCAATTGGCTGAACTGAAGAGGACCACACTTTCGTGGGTGTTATGTCAGACAGGGGATAAGTGAGTTTTTTGGGTTTGGGATCAGTCGAAAAAATCAAAAATGTAGAATCAGATGGAGGCATCATGTATGTATCATGTATCATGTATCATGTATGTAAAAAAATGTATGTATGTATGTATGTATGTATGTATATATGTATGTATCCAAAAAAAAGGAAGGTTTTAAAAACTTCATTTAAAAARACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAAGCCTGTATTCTTTGTTTCTGAAGCTCAGAAATTCAGAAATTCAAAAAAATTTAAATTTTGCGTCATTTTTTTGTGTGCCCCAGTAGAAGGAAAAGCGAGGTCTAAACCTATTATATGAAACTAAAAACCGAAAAGTCTGAAAAAAAATTTCAGTCAAAAAAAAGCTGAATCTTTCACAAGTCAAAGCAAAAATTTCCCTGATTTTTTTTTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATATACAATACAATACAAATAGGCTTGTTAGGTTTGTAAGACTTATCATAAACTTGTATGCCTAGTACAGCCTTTCAGACTTATTATAGGCTTGTAGGCTTATTTTTTGACTTGTATGCTTTTTATAGTCTTTTAGGCTTTTTATAGGCTTGTAGGCTTTTTATAGACGTGTAGGCTTGTTATAGACTTGTTAGGAAACACCTAAATATTCTAAAATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCAAAAATGTAGAATCAGATG</pcr_primer_p1>
		<pcr_primer_p2>ACCTAACAAGCCTATTTGTATTG</pcr_primer_p2>
		<pcr_amplicon_size>466</pcr_amplicon_size>
		<canonical_amplicon>AAATCAAAAATGTAGAATCAGATGGAGGCATCATGTATGTATCATGTATCATGTATCATGTATGTAAAAAAATGTATGTATGTATGTATGTATGTATGTATATATGTATGTATCCAAAAAAAAGGAAGGTTTTAAAAACTTCATTTAAAAAGACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAAGCCTGTATTCTTTGTTTCTGAAGCTCAGAAATTCAGAAATTCAAAAAAATTTAAATTTTGCGTCATTTTTTTGTGTGCCCCAGTAGAAGGAAAAGCGAGGTCTAAACCTATTATATGAAACTAAAAACCGAAAAGTCTGAAAAAAAATTTCAGTCAAAAAAAAGCTGAATCTTTCACAAGTCAAAGCAAAAATTTCCCTGATTTTTTTTTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATATACAATACAATACAAATAGGCTTGTTAGGT</canonical_amplicon>
		<polymorphic_amplicon>AAATCAAAAATGTAGAATCAGATGGAGGCATCATGTATGTATCATGTATCATGTATCATGTATGTAAAAAAATGTATGTATGTATGTATGTATGTATGTATATATGTATGTATCCAAAAAAAAGGAAGGTTTTAAAAACTTCATTTAAAAARACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAAGCCTGTATTCTTTGTTTCTGAAGCTCAGAAATTCAGAAATTCAAAAAAATTTAAATTTTGCGTCATTTTTTTGTGTGCCCCAGTAGAAGGAAAAGCGAGGTCTAAACCTATTATATGAAACTAAAAACCGAAAAGTCTGAAAAAAAATTTCAGTCAAAAAAAAGCTGAATCTTTCACAAGTCAAAGCAAAAATTTCCCTGATTTTTTTTTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATATACAATACAATACAAATAGGCTTGTTAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6259</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>358337</contig_pos>
        <strand>+</strand>
        <context>AAAYTTCATT[A/T]AAAAARACTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGTATATATGTATGTATCCAAAAAAAAGGAAGGTTTTAAAAACTTCATT</left_flank>
        <right_flank>AAAAAGACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAAGCCTGTATTCTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTTAAAATTTGGAAACCCTACGTGACAAAACTCTTCCATTTTCTAGTGGCCAGAAGTGCCCGACCAGAATGTCCGTCAACGAATCGCTCAACTCTACCGTACTCCTGACGACGTGGATTTCTATGTTGGCGGAATTCTCGAACAACCAGCCGCAGGAAGTGTCGTCGGAGCCACGTTCGCCTGTGTCATCGGAAAACAATTCGAACGTCTTCGCGATGGAGACAGATTCTATTTTGAGAATCCAGGAGTATTCACATCTTCTCAATTGGCTGAACTGAAGAGGACCACACTTTCGTGGGTGTTATGTCAGACAGGGGATAAGTGAGTTTTTTGGGTTTGGGATCAGTCGAAAAAATCAAAAATGTAGAATCAGATGGAGGCATCATGTATGTATCATGTATCATGTATCATGTATGTAAAAAAATGTATGTATGTATGTATGTATGTATGTATATATGTATGTATCCAAAAAAAAGGAAGGTTTTAAAAACTTCATTTAAAAAGACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAAGCCTGTATTCTTTGTTTCTGAAGCTCAGAAATTCAGAAATTCAAAAAAATTTAAATTTTGCGTCATTTTTTTGTGTGCCCCAGTAGAAGGAAAAGCGAGGTCTAAACCTATTATATGAAACTAAAAACCGAAAAGTCTGAAAAAAAATTTCAGTCAAAAAAAAGCTGAATCTTTCACAAGTCAAAGCAAAAATTTCCCTGATTTTTTTTTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATATACAATACAATACAAATAGGCTTGTTAGGTTTGTAAGACTTATCATAAACTTGTATGCCTAGTACAGCCTTTCAGACTTATTATAGGCTTGTAGGCTTATTTTTTGACTTGTATGCTTTTTATAGTCTTTTAGGCTTTTTATAGGCTTGTAGGCTTTTTATAGACGTGTAGGCTTGTTATAGACTTGTTAGGAAACACCTAAATATTCTA</canonical>
            <polymorphic>AACTTAAAATTTGGAAACCCTACGTGACAAAACTCTTCCATTTTCTAGTGGCCAGAAGTGCCCGACCAGAATGTCCGTCAACGAATCGCTCAACTCTACCGTACTCCTGACGACGTGGATTTCTATGTTGGCGGAATTCTCGAACAACCAGCCGCAGGAAGTGTCGTCGGAGCCACGTTCGCCTGTGTCATCGGAAAACAATTCGAACGTCTTCGCGATGGAGACAGATTCTATTTTGAGAATCCAGGAGTATTCACATCTTCTCAATTGGCTGAACTGAAGAGGACCACACTTTCGTGGGTGTTATGTCAGACAGGGGATAAGTGAGTTTTTTGGGTTTGGGATCAGTCGAAAAAATCAAAAATGTAGAATCAGATGGAGGCATCATGTATGTATCATGTATCATGTATCATGTATGTAAAAAAATGTATGTATGTATGTATGTATGTATGTATATATGTATGTATCCAAAAAAAAGGAAGGTTTTAAAAACTTCATTWAAAAAGACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAAGCCTGTATTCTTTGTTTCTGAAGCTCAGAAATTCAGAAATTCAAAAAAATTTAAATTTTGCGTCATTTTTTTGTGTGCCCCAGTAGAAGGAAAAGCGAGGTCTAAACCTATTATATGAAACTAAAAACCGAAAAGTCTGAAAAAAAATTTCAGTCAAAAAAAAGCTGAATCTTTCACAAGTCAAAGCAAAAATTTCCCTGATTTTTTTTTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATATACAATACAATACAAATAGGCTTGTTAGGTTTGTAAGACTTATCATAAACTTGTATGCCTAGTACAGCCTTTCAGACTTATTATAGGCTTGTAGGCTTATTTTTTGACTTGTATGCTTTTTATAGTCTTTTAGGCTTTTTATAGGCTTGTAGGCTTTTTATAGACGTGTAGGCTTGTTATAGACTTGTTAGGAAACACCTAAATATTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>487 410 90 13</canonical_bands>
                <polymorphic_bands>487 410 103</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>482 216 195 80 13 10 4</canonical_bands>
                <polymorphic_bands>482 216 195 80 23 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATGTCAGACAGGGGATAAGT</pcr_primer_p1>
		<pcr_primer_p2>ACAAAGAATACAGGCTTGACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTATGTCAGACAGGGGATAAGTGAGTTTTTTGGGTTTGGGATCAGTCGAAAAAATCAAAAATGTAGAATCAGATGGAGGCATCATGTATGTATCATGTATCATGTATCATGTATGTAAAAAAATGTATGTATGTATGTATGTATGTATGTATATATGTATGTATCCAAAAAAAAGGAAGGTTTTAAAAACTTCATTTAAAAAGACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAAGCCTGTATTCTTTGT</canonical_amplicon>
		<polymorphic_amplicon>TTATGTCAGACAGGGGATAAGTGAGTTTTTTGGGTTTGGGATCAGTCGAAAAAATCAAAAATGTAGAATCAGATGGAGGCATCATGTATGTATCATGTATCATGTATCATGTATGTAAAAAAATGTATGTATGTATGTATGTATGTATGTATATATGTATGTATCCAAAAAAAAGGAAGGTTTTAAAAACTTCATTWAAAAAGACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAAGCCTGTATTCTTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6260</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>358330</contig_pos>
        <strand></strand>
        <context>GTTTTRAAAA[C/T]TTCATTWAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTATGTATGTATATATGTATGTATCCAAAAAAAAGGAAGGTTTTAAAAA</left_flank>
        <right_flank>TTCATTTAAAAAGACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAAGCCTG</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGGAAAACTTAAAATTTGGAAACCCTACGTGACAAAACTCTTCCATTTTCTAGTGGCCAGAAGTGCCCGACCAGAATGTCCGTCAACGAATCGCTCAACTCTACCGTACTCCTGACGACGTGGATTTCTATGTTGGCGGAATTCTCGAACAACCAGCCGCAGGAAGTGTCGTCGGAGCCACGTTCGCCTGTGTCATCGGAAAACAATTCGAACGTCTTCGCGATGGAGACAGATTCTATTTTGAGAATCCAGGAGTATTCACATCTTCTCAATTGGCTGAACTGAAGAGGACCACACTTTCGTGGGTGTTATGTCAGACAGGGGATAAGTGAGTTTTTTGGGTTTGGGATCAGTCGAAAAAATCAAAAATGTAGAATCAGATGGAGGCATCATGTATGTATCATGTATCATGTATCATGTATGTAAAAAAATGTATGTATGTATGTATGTATGTATGTATATATGTATGTATCCAAAAAAAAGGAAGGTTTTAAAAACTTCATTTAAAAAGACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAAGCCTGTATTCTTTGTTTCTGAAGCTCAGAAATTCAGAAATTCAAAAAAATTTAAATTTTGCGTCATTTTTTTGTGTGCCCCAGTAGAAGGAAAAGCGAGGTCTAAACCTATTATATGAAACTAAAAACCGAAAAGTCTGAAAAAAAATTTCAGTCAAAAAAAAGCTGAATCTTTCACAAGTCAAAGCAAAAATTTCCCTGATTTTTTTTTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATATACAATACAATACAAATAGGCTTGTTAGGTTTGTAAGACTTATCATAAACTTGTATGCCTAGTACAGCCTTTCAGACTTATTATAGGCTTGTAGGCTTATTTTTTGACTTGTATGCTTTTTATAGTCTTTTAGGCTTTTTATAGGCTTGTAGGCTTTTTATAGACGTGTAGGCTTGTTATAGACTTGTTAGGAAACACCTAAA</canonical>
            <polymorphic>TTAGGAAAACTTAAAATTTGGAAACCCTACGTGACAAAACTCTTCCATTTTCTAGTGGCCAGAAGTGCCCGACCAGAATGTCCGTCAACGAATCGCTCAACTCTACCGTACTCCTGACGACGTGGATTTCTATGTTGGCGGAATTCTCGAACAACCAGCCGCAGGAAGTGTCGTCGGAGCCACGTTCGCCTGTGTCATCGGAAAACAATTCGAACGTCTTCGCGATGGAGACAGATTCTATTTTGAGAATCCAGGAGTATTCACATCTTCTCAATTGGCTGAACTGAAGAGGACCACACTTTCGTGGGTGTTATGTCAGACAGGGGATAAGTGAGTTTTTTGGGTTTGGGATCAGTCGAAAAAATCAAAAATGTAGAATCAGATGGAGGCATCATGTATGTATCATGTATCATGTATCATGTATGTAAAAAAATGTATGTATGTATGTATGTATGTATGTATATATGTATGTATCCAAAAAAAAGGAAGGTTTTAAAAAYTTCATTTAAAAAGACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAAGCCTGTATTCTTTGTTTCTGAAGCTCAGAAATTCAGAAATTCAAAAAAATTTAAATTTTGCGTCATTTTTTTGTGTGCCCCAGTAGAAGGAAAAGCGAGGTCTAAACCTATTATATGAAACTAAAAACCGAAAAGTCTGAAAAAAAATTTCAGTCAAAAAAAAGCTGAATCTTTCACAAGTCAAAGCAAAAATTTCCCTGATTTTTTTTTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATATACAATACAATACAAATAGGCTTGTTAGGTTTGTAAGACTTATCATAAACTTGTATGCCTAGTACAGCCTTTCAGACTTATTATAGGCTTGTAGGCTTATTTTTTGACTTGTATGCTTTTTATAGTCTTTTAGGCTTTTTATAGGCTTGTAGGCTTTTTATAGACGTGTAGGCTTGTTATAGACTTGTTAGGAAACACCTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTATGTCAGACAGGGGATAAGT</pcr_primer_p1>
		<pcr_primer_p2>AAGAATACAGGCTTGACCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTATGTCAGACAGGGGATAAGTGAGTTTTTTGGGTTTGGGATCAGTCGAAAAAATCAAAAATGTAGAATCAGATGGAGGCATCATGTATGTATCATGTATCATGTATCATGTATGTAAAAAAATGTATGTATGTATGTATGTATGTATGTATATATGTATGTATCCAAAAAAAAGGAAGGTTTTAAAAACTTCATTTAAAAAGACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAAGCCTGTATTCTT</canonical_amplicon>
		<polymorphic_amplicon>GTTATGTCAGACAGGGGATAAGTGAGTTTTTTGGGTTTGGGATCAGTCGAAAAAATCAAAAATGTAGAATCAGATGGAGGCATCATGTATGTATCATGTATCATGTATCATGTATGTAAAAAAATGTATGTATGTATGTATGTATGTATGTATATATGTATGTATCCAAAAAAAAGGAAGGTTTTAAAAAYTTCATTTAAAAAGACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAAGCCTGTATTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6261</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>358325</contig_pos>
        <strand></strand>
        <context>GGAAGGTTTT[A/G]AAAAYTTCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGTATGTATGTATGTATATATGTATGTATCCAAAAAAAAGGAAGGTTTT</left_flank>
        <right_flank>AAAACTTCATTTAAAAAGACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAA</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCGTTAGGAAAACTTAAAATTTGGAAACCCTACGTGACAAAACTCTTCCATTTTCTAGTGGCCAGAAGTGCCCGACCAGAATGTCCGTCAACGAATCGCTCAACTCTACCGTACTCCTGACGACGTGGATTTCTATGTTGGCGGAATTCTCGAACAACCAGCCGCAGGAAGTGTCGTCGGAGCCACGTTCGCCTGTGTCATCGGAAAACAATTCGAACGTCTTCGCGATGGAGACAGATTCTATTTTGAGAATCCAGGAGTATTCACATCTTCTCAATTGGCTGAACTGAAGAGGACCACACTTTCGTGGGTGTTATGTCAGACAGGGGATAAGTGAGTTTTTTGGGTTTGGGATCAGTCGAAAAAATCAAAAATGTAGAATCAGATGGAGGCATCATGTATGTATCATGTATCATGTATCATGTATGTAAAAAAATGTATGTATGTATGTATGTATGTATGTATATATGTATGTATCCAAAAAAAAGGAAGGTTTTAAAAACTTCATTTAAAAAGACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAAGCCTGTATTCTTTGTTTCTGAAGCTCAGAAATTCAGAAATTCAAAAAAATTTAAATTTTGCGTCATTTTTTTGTGTGCCCCAGTAGAAGGAAAAGCGAGGTCTAAACCTATTATATGAAACTAAAAACCGAAAAGTCTGAAAAAAAATTTCAGTCAAAAAAAAGCTGAATCTTTCACAAGTCAAAGCAAAAATTTCCCTGATTTTTTTTTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATATACAATACAATACAAATAGGCTTGTTAGGTTTGTAAGACTTATCATAAACTTGTATGCCTAGTACAGCCTTTCAGACTTATTATAGGCTTGTAGGCTTATTTTTTGACTTGTATGCTTTTTATAGTCTTTTAGGCTTTTTATAGGCTTGTAGGCTTTTTATAGACGTGTAGGCTTGTTATAGACTTGTTAGGAAACAC</canonical>
            <polymorphic>CTTCGTTAGGAAAACTTAAAATTTGGAAACCCTACGTGACAAAACTCTTCCATTTTCTAGTGGCCAGAAGTGCCCGACCAGAATGTCCGTCAACGAATCGCTCAACTCTACCGTACTCCTGACGACGTGGATTTCTATGTTGGCGGAATTCTCGAACAACCAGCCGCAGGAAGTGTCGTCGGAGCCACGTTCGCCTGTGTCATCGGAAAACAATTCGAACGTCTTCGCGATGGAGACAGATTCTATTTTGAGAATCCAGGAGTATTCACATCTTCTCAATTGGCTGAACTGAAGAGGACCACACTTTCGTGGGTGTTATGTCAGACAGGGGATAAGTGAGTTTTTTGGGTTTGGGATCAGTCGAAAAAATCAAAAATGTAGAATCAGATGGAGGCATCATGTATGTATCATGTATCATGTATCATGTATGTAAAAAAATGTATGTATGTATGTATGTATGTATGTATATATGTATGTATCCAAAAAAAAGGAAGGTTTTRAAAACTTCATTTAAAAAGACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAAGCCTGTATTCTTTGTTTCTGAAGCTCAGAAATTCAGAAATTCAAAAAAATTTAAATTTTGCGTCATTTTTTTGTGTGCCCCAGTAGAAGGAAAAGCGAGGTCTAAACCTATTATATGAAACTAAAAACCGAAAAGTCTGAAAAAAAATTTCAGTCAAAAAAAAGCTGAATCTTTCACAAGTCAAAGCAAAAATTTCCCTGATTTTTTTTTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATATACAATACAATACAAATAGGCTTGTTAGGTTTGTAAGACTTATCATAAACTTGTATGCCTAGTACAGCCTTTCAGACTTATTATAGGCTTGTAGGCTTATTTTTTGACTTGTATGCTTTTTATAGTCTTTTAGGCTTTTTATAGGCTTGTAGGCTTTTTATAGACGTGTAGGCTTGTTATAGACTTGTTAGGAAACAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 398 90 13</canonical_bands>
                <polymorphic_bands>512 398 90</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>482 204 195 80 16 13 10</canonical_bands>
                <polymorphic_bands>495 204 195 80 16 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTATGTCAGACAGGGGATAAGT</pcr_primer_p1>
		<pcr_primer_p2>AAGAATACAGGCTTGACCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTATGTCAGACAGGGGATAAGTGAGTTTTTTGGGTTTGGGATCAGTCGAAAAAATCAAAAATGTAGAATCAGATGGAGGCATCATGTATGTATCATGTATCATGTATCATGTATGTAAAAAAATGTATGTATGTATGTATGTATGTATGTATATATGTATGTATCCAAAAAAAAGGAAGGTTTTAAAAACTTCATTTAAAAAGACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAAGCCTGTATTCTT</canonical_amplicon>
		<polymorphic_amplicon>GTTATGTCAGACAGGGGATAAGTGAGTTTTTTGGGTTTGGGATCAGTCGAAAAAATCAAAAATGTAGAATCAGATGGAGGCATCATGTATGTATCATGTATCATGTATCATGTATGTAAAAAAATGTATGTATGTATGTATGTATGTATGTATATATGTATGTATCCAAAAAAAAGGAAGGTTTTRAAAACTTCATTTAAAAAGACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAAGCCTGTATTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6265</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>358629</contig_pos>
        <strand>+</strand>
        <context>TGTTAAATAK[A/G]CAATRCAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATAT</left_flank>
        <right_flank>CAATACAATACAAATAGGCTTGTTAGGTTTGTAAGACTTATCATAAACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGTGGGTGTTATGTCAGACAGGGGATAAGTGAGTTTTTTGGGTTTGGGATCAGTCGAAAAAATCAAAAATGTAGAATCAGATGGAGGCATCATGTATGTATCATGTATCATGTATCATGTATGTAAAAAAATGTATGTATGTATGTATGTATGTATGTATATATGTATGTATCCAAAAAAAAGGAAGGTTTTAAAAACTTCATTTAAAAAGACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAAGCCTGTATTCTTTGTTTCTGAAGCTCAGAAATTCAGAAATTCAAAAAAATTTAAATTTTGCGTCATTTTTTTGTGTGCCCCAGTAGAAGGAAAAGCGAGGTCTAAACCTATTATATGAAACTAAAAACCGAAAAGTCTGAAAAAAAATTTCAGTCAAAAAAAAGCTGAATCTTTCACAAGTCAAAGCAAAAATTTCCCTGATTTTTTTTTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATATACAATACAATACAAATAGGCTTGTTAGGTTTGTAAGACTTATCATAAACTTGTATGCCTAGTACAGCCTTTCAGACTTATTATAGGCTTGTAGGCTTATTTTTTGACTTGTATGCTTTTTATAGTCTTTTAGGCTTTTTATAGGCTTGTAGGCTTTTTATAGACGTGTAGGCTTGTTATAGACTTGTTAGGAAACACCTAAATATTCTAAAATCAAATATGTGGGTTAACTAAAATTGAAAAATTTGCCGTGAGAATAAAAAAACTTACCCAAAAAATTCATTAAAAAGTAAGCATTTTTAAATAACAAAATTTATCATCTTTCAGCATGCTCCGAGTCGGCCGTCGTGCATTCGACATCGAAGATGGCTCTCGTGCCGTTCCATGCTCCTCAATCAATGGATTGAACCTCGAAGCATGGAGAGAATAGATTACCCTTTATTTTTTCTCCACTAATCCCAAAAAACTTCTTCTCCCCCCCAAAAAATGTGCCAAATTTCCT</canonical>
            <polymorphic>TTTCGTGGGTGTTATGTCAGACAGGGGATAAGTGAGTTTTTTGGGTTTGGGATCAGTCGAAAAAATCAAAAATGTAGAATCAGATGGAGGCATCATGTATGTATCATGTATCATGTATCATGTATGTAAAAAAATGTATGTATGTATGTATGTATGTATGTATATATGTATGTATCCAAAAAAAAGGAAGGTTTTAAAAACTTCATTTAAAAAGACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAAGCCTGTATTCTTTGTTTCTGAAGCTCAGAAATTCAGAAATTCAAAAAAATTTAAATTTTGCGTCATTTTTTTGTGTGCCCCAGTAGAAGGAAAAGCGAGGTCTAAACCTATTATATGAAACTAAAAACCGAAAAGTCTGAAAAAAAATTTCAGTCAAAAAAAAGCTGAATCTTTCACAAGTCAAAGCAAAAATTTCCCTGATTTTTTTTTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATATRCAATACAATACAAATAGGCTTGTTAGGTTTGTAAGACTTATCATAAACTTGTATGCCTAGTACAGCCTTTCAGACTTATTATAGGCTTGTAGGCTTATTTTTTGACTTGTATGCTTTTTATAGTCTTTTAGGCTTTTTATAGGCTTGTAGGCTTTTTATAGACGTGTAGGCTTGTTATAGACTTGTTAGGAAACACCTAAATATTCTAAAATCAAATATGTGGGTTAACTAAAATTGAAAAATTTGCCGTGAGAATAAAAAAACTTACCCAAAAAATTCATTAAAAAGTAAGCATTTTTAAATAACAAAATTTATCATCTTTCAGCATGCTCCGAGTCGGCCGTCGTGCATTCGACATCGAAGATGGCTCTCGTGCCGTTCCATGCTCCTCAATCAATGGATTGAACCTCGAAGCATGGAGAGAATAGATTACCCTTTATTTTTTCTCCACTAATCCCAAAAAACTTCTTCTCCCCCCCAAAAAATGTGCCAAATTTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGCTCAGAAATTCAGAAA</pcr_primer_p1>
		<pcr_primer_p2>GGCTGTACTAGGCATACAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>TGAAGCTCAGAAATTCAGAAATTCAAAAAAATTTAAATTTTGCGTCATTTTTTTGTGTGCCCCAGTAGAAGGAAAAGCGAGGTCTAAACCTATTATATGAAACTAAAAACCGAAAAGTCTGAAAAAAAATTTCAGTCAAAAAAAAGCTGAATCTTTCACAAGTCAAAGCAAAAATTTCCCTGATTTTTTTTTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATATACAATACAATACAAATAGGCTTGTTAGGTTTGTAAGACTTATCATAAACTTGTATGCCTAGTACAGCC</canonical_amplicon>
		<polymorphic_amplicon>TGAAGCTCAGAAATTCAGAAATTCAAAAAAATTTAAATTTTGCGTCATTTTTTTGTGTGCCCCAGTAGAAGGAAAAGCGAGGTCTAAACCTATTATATGAAACTAAAAACCGAAAAGTCTGAAAAAAAATTTCAGTCAAAAAAAAGCTGAATCTTTCACAAGTCAAAGCAAAAATTTCCCTGATTTTTTTTTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATATRCAATACAATACAAATAGGCTTGTTAGGTTTGTAAGACTTATCATAAACTTGTATGCCTAGTACAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6266</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>358628</contig_pos>
        <strand>+</strand>
        <context>TTGTTAAATA[G/T]RCAATRCAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTTTTTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATA</left_flank>
        <right_flank>ACAATACAATACAAATAGGCTTGTTAGGTTTGTAAGACTTATCATAAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTCGTGGGTGTTATGTCAGACAGGGGATAAGTGAGTTTTTTGGGTTTGGGATCAGTCGAAAAAATCAAAAATGTAGAATCAGATGGAGGCATCATGTATGTATCATGTATCATGTATCATGTATGTAAAAAAATGTATGTATGTATGTATGTATGTATGTATATATGTATGTATCCAAAAAAAAGGAAGGTTTTAAAAACTTCATTTAAAAAGACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAAGCCTGTATTCTTTGTTTCTGAAGCTCAGAAATTCAGAAATTCAAAAAAATTTAAATTTTGCGTCATTTTTTTGTGTGCCCCAGTAGAAGGAAAAGCGAGGTCTAAACCTATTATATGAAACTAAAAACCGAAAAGTCTGAAAAAAAATTTCAGTCAAAAAAAAGCTGAATCTTTCACAAGTCAAAGCAAAAATTTCCCTGATTTTTTTTTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATATACAATACAATACAAATAGGCTTGTTAGGTTTGTAAGACTTATCATAAACTTGTATGCCTAGTACAGCCTTTCAGACTTATTATAGGCTTGTAGGCTTATTTTTTGACTTGTATGCTTTTTATAGTCTTTTAGGCTTTTTATAGGCTTGTAGGCTTTTTATAGACGTGTAGGCTTGTTATAGACTTGTTAGGAAACACCTAAATATTCTAAAATCAAATATGTGGGTTAACTAAAATTGAAAAATTTGCCGTGAGAATAAAAAAACTTACCCAAAAAATTCATTAAAAAGTAAGCATTTTTAAATAACAAAATTTATCATCTTTCAGCATGCTCCGAGTCGGCCGTCGTGCATTCGACATCGAAGATGGCTCTCGTGCCGTTCCATGCTCCTCAATCAATGGATTGAACCTCGAAGCATGGAGAGAATAGATTACCCTTTATTTTTTCTCCACTAATCCCAAAAAACTTCTTCTCCCCCCCAAAAAATGTGCCAAATTTCC</canonical>
            <polymorphic>CTTTCGTGGGTGTTATGTCAGACAGGGGATAAGTGAGTTTTTTGGGTTTGGGATCAGTCGAAAAAATCAAAAATGTAGAATCAGATGGAGGCATCATGTATGTATCATGTATCATGTATCATGTATGTAAAAAAATGTATGTATGTATGTATGTATGTATGTATATATGTATGTATCCAAAAAAAAGGAAGGTTTTAAAAACTTCATTTAAAAAGACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAAGCCTGTATTCTTTGTTTCTGAAGCTCAGAAATTCAGAAATTCAAAAAAATTTAAATTTTGCGTCATTTTTTTGTGTGCCCCAGTAGAAGGAAAAGCGAGGTCTAAACCTATTATATGAAACTAAAAACCGAAAAGTCTGAAAAAAAATTTCAGTCAAAAAAAAGCTGAATCTTTCACAAGTCAAAGCAAAAATTTCCCTGATTTTTTTTTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATAKACAATACAATACAAATAGGCTTGTTAGGTTTGTAAGACTTATCATAAACTTGTATGCCTAGTACAGCCTTTCAGACTTATTATAGGCTTGTAGGCTTATTTTTTGACTTGTATGCTTTTTATAGTCTTTTAGGCTTTTTATAGGCTTGTAGGCTTTTTATAGACGTGTAGGCTTGTTATAGACTTGTTAGGAAACACCTAAATATTCTAAAATCAAATATGTGGGTTAACTAAAATTGAAAAATTTGCCGTGAGAATAAAAAAACTTACCCAAAAAATTCATTAAAAAGTAAGCATTTTTAAATAACAAAATTTATCATCTTTCAGCATGCTCCGAGTCGGCCGTCGTGCATTCGACATCGAAGATGGCTCTCGTGCCGTTCCATGCTCCTCAATCAATGGATTGAACCTCGAAGCATGGAGAGAATAGATTACCCTTTATTTTTTCTCCACTAATCCCAAAAAACTTCTTCTCCCCCCCAAAAAATGTGCCAAATTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGCTCAGAAATTCAGAAA</pcr_primer_p1>
		<pcr_primer_p2>GGCTGTACTAGGCATACAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>TGAAGCTCAGAAATTCAGAAATTCAAAAAAATTTAAATTTTGCGTCATTTTTTTGTGTGCCCCAGTAGAAGGAAAAGCGAGGTCTAAACCTATTATATGAAACTAAAAACCGAAAAGTCTGAAAAAAAATTTCAGTCAAAAAAAAGCTGAATCTTTCACAAGTCAAAGCAAAAATTTCCCTGATTTTTTTTTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATATACAATACAATACAAATAGGCTTGTTAGGTTTGTAAGACTTATCATAAACTTGTATGCCTAGTACAGCC</canonical_amplicon>
		<polymorphic_amplicon>TGAAGCTCAGAAATTCAGAAATTCAAAAAAATTTAAATTTTGCGTCATTTTTTTGTGTGCCCCAGTAGAAGGAAAAGCGAGGTCTAAACCTATTATATGAAACTAAAAACCGAAAAGTCTGAAAAAAAATTTCAGTCAAAAAAAAGCTGAATCTTTCACAAGTCAAAGCAAAAATTTCCCTGATTTTTTTTTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATAKACAATACAATACAAATAGGCTTGTTAGGTTTGTAAGACTTATCATAAACTTGTATGCCTAGTACAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6273</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>2493</contig_pos>
        <strand></strand>
        <context>AGAGGAAAAA[G/T]ATGAATTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATATATTCGCCCTTCTTCATACTCTCCTCAATTTTCGACGAGAGGAAAAA</left_flank>
        <right_flank>ATGAATTTGAATCTGACGATCACTCCGAGAGCGTTTCTTGTCGCATCCGC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGCGATTTTCAGTAAATTCTAGGAAATTTCTAGTGATTTTTTCTGGATTTTTAGTGATTTTTAAAAGAATTTCAAATTATTTTTTTGGAATTATTAGCGGATTTTTAGACCGTTCTGTTCATTCTGCGGACCATTTCTGACTATTTTTAGACCTTTTTGACCAATTTTTAGGCTTATTTGAGCTATTTTAGGTCATTTTCACAATTTTCAGTCTTATTTTAACTATTTTAGGTTGATTTTAAAGTCATTTTCGGTCAGATTTCCCGCTCTTCGGATATCAATTTTTAGCCATTTCAAGCCAATTTTCAGCCATTTTCAGCTCCAAACTCACATTCTCGAAACAATGGAACATCGGTGTCGGCGTACAACGATTTGGCTCTTGTATAATCGTTCAAAATCGTAATATATTCGCCCTTCTTCATACTCTCCTCAATTTTCGACGAGAGGAAAAAGATGAATTTGAATCTGACGATCACTCCGAGAGCGTTTCTTGTCGCATCCGCGTCGTCTTTCCGTTTCAGAACGTCTGCGAAAACGGATTCGGCTTTCAGTTTTGAGTCTTTTATCTGGAAAAATGAGGATTTTTGGGGAGGAAAACCGGCAAAAATGAGCCAAAATCGGTGAATTTCGAGCCAAAAATGAGATTTTAAAGAAATTTTTTAAAACATTTTATTGAAAAAACGACGAGTTTTTTTTCGGGAAATTCGGGGACCATTACTTTGATTTTCTGGATTTTTTTTTCCAGTTTTTTCGCCTATTTTAAAATTGAATTTCGAAAAAAAAAAGAGAATTTTGAGCCAAAATCAACTGAAAACTTTACAAAAAATTGGGATTTTCAGCAGAATTTTTGTCCGAATTTCATTAAAAAACGACGAATTTTCCGGGAAATTCTGGGACGATTTTCATGATTTTAGCTATAATTTTCCTCATTTTTGTATAGTTTTTTCGCTGAA</canonical>
            <polymorphic>TCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGCGATTTTCAGTAAATTCTAGGAAATTTCTAGTGATTTTTTCTGGATTTTTAGTGATTTTTAAAAGAATTTCAAATTATTTTTTTGGAATTATTAGCGGATTTTTAGACCGTTCTGTTCATTCTGCGGACCATTTCTGACTATTTTTAGACCTTTTTGACCAATTTTTAGGCTTATTTGAGCTATTTTAGGTCATTTTCACAATTTTCAGTCTTATTTTAACTATTTTAGGTTGATTTTAAAGTCATTTTCGGTCAGATTTCCCGCTCTTCGGATATCAATTTTTAGCCATTTCAAGCCAATTTTCAGCCATTTTCAGCTCCAAACTCACATTCTCGAAACAATGGAACATCGGTGTCGGCGTACAACGATTTGGCTCTTGTATAATCGTTCAAAATCGTAATATATTCGCCCTTCTTCATACTCTCCTCAATTTTCGACGAGAGGAAAAAKATGAATTTGAATCTGACGATCACTCCGAGAGCGTTTCTTGTCGCATCCGCGTCGTCTTTCCGTTTCAGAACGTCTGCGAAAACGGATTCGGCTTTCAGTTTTGAGTCTTTTATCTGGAAAAATGAGGATTTTTGGGGAGGAAAACCGGCAAAAATGAGCCAAAATCGGTGAATTTCGAGCCAAAAATGAGATTTTAAAGAAATTTTTTAAAACATTTTATTGAAAAAACGACGAGTTTTTTTTCGGGAAATTCGGGGACCATTACTTTGATTTTCTGGATTTTTTTTTCCAGTTTTTTCGCCTATTTTAAAATTGAATTTCGAAAAAAAAAAGAGAATTTTGAGCCAAAATCAACTGAAAACTTTACAAAAAATTGGGATTTTCAGCAGAATTTTTGTCCGAATTTCATTAAAAAACGACGAATTTTCCGGGAAATTCTGGGACGATTTTCATGATTTTAGCTATAATTTTCCTCATTTTTGTATAGTTTTTTCGCTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTCACATTCTCGAAACAAT</pcr_primer_p1>
		<pcr_primer_p2>TCCAGATAAAAGACTCAAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAACTCACATTCTCGAAACAATGGAACATCGGTGTCGGCGTACAACGATTTGGCTCTTGTATAATCGTTCAAAATCGTAATATATTCGCCCTTCTTCATACTCTCCTCAATTTTCGACGAGAGGAAAAAGATGAATTTGAATCTGACGATCACTCCGAGAGCGTTTCTTGTCGCATCCGCGTCGTCTTTCCGTTTCAGAACGTCTGCGAAAACGGATTCGGCTTTCAGTTTTGAGTCTTTTATCTGGA</canonical_amplicon>
		<polymorphic_amplicon>AAACTCACATTCTCGAAACAATGGAACATCGGTGTCGGCGTACAACGATTTGGCTCTTGTATAATCGTTCAAAATCGTAATATATTCGCCCTTCTTCATACTCTCCTCAATTTTCGACGAGAGGAAAAAKATGAATTTGAATCTGACGATCACTCCGAGAGCGTTTCTTGTCGCATCCGCGTCGTCTTTCCGTTTCAGAACGTCTGCGAAAACGGATTCGGCTTTCAGTTTTGAGTCTTTTATCTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6274</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>2711</contig_pos>
        <strand></strand>
        <context>TAAAACATTT[T/C]ATTGAAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTGAATTTCGAGCCAAAAATGAGATTTTAAAGAAATTTTTTAAAACATTT</left_flank>
        <right_flank>ATTGAAAAAACGACGAGTTTTTTTTCGGGAAATTCGGGGACCATTACTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTATTTGAGCTATTTTAGGTCATTTTCACAATTTTCAGTCTTATTTTAACTATTTTAGGTTGATTTTAAAGTCATTTTCGGTCAGATTTCCCGCTCTTCGGATATCAATTTTTAGCCATTTCAAGCCAATTTTCAGCCATTTTCAGCTCCAAACTCACATTCTCGAAACAATGGAACATCGGTGTCGGCGTACAACGATTTGGCTCTTGTATAATCGTTCAAAATCGTAATATATTCGCCCTTCTTCATACTCTCCTCAATTTTCGACGAGAGGAAAAAGATGAATTTGAATCTGACGATCACTCCGAGAGCGTTTCTTGTCGCATCCGCGTCGTCTTTCCGTTTCAGAACGTCTGCGAAAACGGATTCGGCTTTCAGTTTTGAGTCTTTTATCTGGAAAAATGAGGATTTTTGGGGAGGAAAACCGGCAAAAATGAGCCAAAATCGGTGAATTTCGAGCCAAAAATGAGATTTTAAAGAAATTTTTTAAAACATTTTATTGAAAAAACGACGAGTTTTTTTTCGGGAAATTCGGGGACCATTACTTTGATTTTCTGGATTTTTTTTTCCAGTTTTTTCGCCTATTTTAAAATTGAATTTCGAAAAAAAAAAGAGAATTTTGAGCCAAAATCAACTGAAAACTTTACAAAAAATTGGGATTTTCAGCAGAATTTTTGTCCGAATTTCATTAAAAAACGACGAATTTTCCGGGAAATTCTGGGACGATTTTCATGATTTTAGCTATAATTTTCCTCATTTTTGTATAGTTTTTTCGCTGAACTTCGAACAAATTTTGATGAAAATATCGGAATTTTTTGGGGGAAAAATCGGGTGCAAATGGGCTGAAAAATAGCCGTTTTTGAGCCGAAAATTGTTTCTTTTTCGGATTTTTTAGCTATAATTTTTTTTCGAAATTGAGATTTTTTCGGTTTTTTTGAAACTATTTTCTGCCAAATTTTGAAAATTTTCGGGTTACTGTAGTTCCAAACAGGGCGCAA</canonical>
            <polymorphic>GCTTATTTGAGCTATTTTAGGTCATTTTCACAATTTTCAGTCTTATTTTAACTATTTTAGGTTGATTTTAAAGTCATTTTCGGTCAGATTTCCCGCTCTTCGGATATCAATTTTTAGCCATTTCAAGCCAATTTTCAGCCATTTTCAGCTCCAAACTCACATTCTCGAAACAATGGAACATCGGTGTCGGCGTACAACGATTTGGCTCTTGTATAATCGTTCAAAATCGTAATATATTCGCCCTTCTTCATACTCTCCTCAATTTTCGACGAGAGGAAAAAGATGAATTTGAATCTGACGATCACTCCGAGAGCGTTTCTTGTCGCATCCGCGTCGTCTTTCCGTTTCAGAACGTCTGCGAAAACGGATTCGGCTTTCAGTTTTGAGTCTTTTATCTGGAAAAATGAGGATTTTTGGGGAGGAAAACCGGCAAAAATGAGCCAAAATCGGTGAATTTCGAGCCAAAAATGAGATTTTAAAGAAATTTTTTAAAACATTTYATTGAAAAAACGACGAGTTTTTTTTCGGGAAATTCGGGGACCATTACTTTGATTTTCTGGATTTTTTTTTCCAGTTTTTTCGCCTATTTTAAAATTGAATTTCGAAAAAAAAAAGAGAATTTTGAGCCAAAATCAACTGAAAACTTTACAAAAAATTGGGATTTTCAGCAGAATTTTTGTCCGAATTTCATTAAAAAACGACGAATTTTCCGGGAAATTCTGGGACGATTTTCATGATTTTAGCTATAATTTTCCTCATTTTTGTATAGTTTTTTCGCTGAACTTCGAACAAATTTTGATGAAAATATCGGAATTTTTTGGGGGAAAAATCGGGTGCAAATGGGCTGAAAAATAGCCGTTTTTGAGCCGAAAATTGTTTCTTTTTCGGATTTTTTAGCTATAATTTTTTTTCGAAATTGAGATTTTTTCGGTTTTTTTGAAACTATTTTCTGCCAAATTTTGAAAATTTTCGGGTTACTGTAGTTCCAAACAGGGCGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGTTTTGAGTCTTTTATCTG</pcr_primer_p1>
		<pcr_primer_p2>TTGGCTCAAAATTCTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGTTTTGAGTCTTTTATCTGGAAAAATGAGGATTTTTGGGGAGGAAAACCGGCAAAAATGAGCCAAAATCGGTGAATTTCGAGCCAAAAATGAGATTTTAAAGAAATTTTTTAAAACATTTTATTGAAAAAACGACGAGTTTTTTTTCGGGAAATTCGGGGACCATTACTTTGATTTTCTGGATTTTTTTTTCCAGTTTTTTCGCCTATTTTAAAATTGAATTTCGAAAAAAAAAAGAGAATTTTGAGCCAA</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGTTTTGAGTCTTTTATCTGGAAAAATGAGGATTTTTGGGGAGGAAAACCGGCAAAAATGAGCCAAAATCGGTGAATTTCGAGCCAAAAATGAGATTTTAAAGAAATTTTTTAAAACATTTYATTGAAAAAACGACGAGTTTTTTTTCGGGAAATTCGGGGACCATTACTTTGATTTTCTGGATTTTTTTTTCCAGTTTTTTCGCCTATTTTAAAATTGAATTTCGAAAAAAAAAAGAGAATTTTGAGCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6275</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>5953</contig_pos>
        <strand>+</strand>
        <context>TCGATTTAGA[A/G]GCRTTAATTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTATTTTTCTCTATTTCCGGGGTCCACGACTTTATCTAGGTCGATTTAGA</left_flank>
        <right_flank>GCGTTAATTCCAAATTTTTTGATTAGAAACCCCCTTTTTTAGCCTTTCTA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGTCTATTTTGAGTTGGTTTCAGCCATTTTAAAGCTATTTTCAGCTATTTTATAGTCAATTTCAAGCTTATTTTAAGCATACTTTCAGCTATTTTCCACAATTTCAAGCATATTTTCAGTCATTTCCCAGAAATTTCAGTCTATTTTTAGCAATTTTCAGCATATTTTAAAGCGTTTCAAGTCTGTTTTCAGCCATTTTCAGCATTTTCAAGCCCACCTGAATCTGTGGAACACTCCTTATCGCCTCTCTCCCAGGCACCGTTCTTGTCTCATCGACCCAAACCGCAGATTCCTCCAACGGACCGATTTGAGTGATAAAAACGCGGAATTTAACGTTGGAAGTGCCTTTTCCACCGGATTTTGTCACTATTCGGACCTCTCCGGGACCTCTGGACGCGGCTCCAACGCGGGCGATGATTTTTGATGGGGATTTCCACCTGGAAATCGTATTTTTCTCTATTTCCGGGGTCCACGACTTTATCTAGGTCGATTTAGAGGCGTTAATTCCAAATTTTTTGATTAGAAACCCCCTTTTTTAGCCTTTCTAACCCCAAATTCTCACTAACTTCATACTCCACAAACTATCGATGCCACAAATGAACAGCATGATCACATCGCTCTGATCACATCCTAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCT</canonical>
            <polymorphic>TTCTGTCTATTTTGAGTTGGTTTCAGCCATTTTAAAGCTATTTTCAGCTATTTTATAGTCAATTTCAAGCTTATTTTAAGCATACTTTCAGCTATTTTCCACAATTTCAAGCATATTTTCAGTCATTTCCCAGAAATTTCAGTCTATTTTTAGCAATTTTCAGCATATTTTAAAGCGTTTCAAGTCTGTTTTCAGCCATTTTCAGCATTTTCAAGCCCACCTGAATCTGTGGAACACTCCTTATCGCCTCTCTCCCAGGCACCGTTCTTGTCTCATCGACCCAAACCGCAGATTCCTCCAACGGACCGATTTGAGTGATAAAAACGCGGAATTTAACGTTGGAAGTGCCTTTTCCACCGGATTTTGTCACTATTCGGACCTCTCCGGGACCTCTGGACGCGGCTCCAACGCGGGCGATGATTTTTGATGGGGATTTCCACCTGGAAATCGTATTTTTCTCTATTTCCGGGGTCCACGACTTTATCTAGGTCGATTTAGARGCGTTAATTCCAAATTTTTTGATTAGAAACCCCCTTTTTTAGCCTTTCTAACCCCAAATTCTCACTAACTTCATACTCCACAAACTATCGATGCCACAAATGAACAGCATGATCACATCGCTCTGATCACATCCTAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCGATTTGAGTGATAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GGGGTTAGAAAGGCTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GACCGATTTGAGTGATAAAAACGCGGAATTTAACGTTGGAAGTGCCTTTTCCACCGGATTTTGTCACTATTCGGACCTCTCCGGGACCTCTGGACGCGGCTCCAACGCGGGCGATGATTTTTGATGGGGATTTCCACCTGGAAATCGTATTTTTCTCTATTTCCGGGGTCCACGACTTTATCTAGGTCGATTTAGAGGCGTTAATTCCAAATTTTTTGATTAGAAACCCCCTTTTTTAGCCTTTCTAACCCC</canonical_amplicon>
		<polymorphic_amplicon>GACCGATTTGAGTGATAAAAACGCGGAATTTAACGTTGGAAGTGCCTTTTCCACCGGATTTTGTCACTATTCGGACCTCTCCGGGACCTCTGGACGCGGCTCCAACGCGGGCGATGATTTTTGATGGGGATTTCCACCTGGAAATCGTATTTTTCTCTATTTCCGGGGTCCACGACTTTATCTAGGTCGATTTAGARGCGTTAATTCCAAATTTTTTGATTAGAAACCCCCTTTTTTAGCCTTTCTAACCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6276</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>5956</contig_pos>
        <strand>+</strand>
        <context>ATTTAGARGC[A/G]TTAATTCCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTCTCTATTTCCGGGGTCCACGACTTTATCTAGGTCGATTTAGAGGC</left_flank>
        <right_flank>TTAATTCCAAATTTTTTGATTAGAAACCCCCTTTTTTAGCCTTTCTAACC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCTATTTTGAGTTGGTTTCAGCCATTTTAAAGCTATTTTCAGCTATTTTATAGTCAATTTCAAGCTTATTTTAAGCATACTTTCAGCTATTTTCCACAATTTCAAGCATATTTTCAGTCATTTCCCAGAAATTTCAGTCTATTTTTAGCAATTTTCAGCATATTTTAAAGCGTTTCAAGTCTGTTTTCAGCCATTTTCAGCATTTTCAAGCCCACCTGAATCTGTGGAACACTCCTTATCGCCTCTCTCCCAGGCACCGTTCTTGTCTCATCGACCCAAACCGCAGATTCCTCCAACGGACCGATTTGAGTGATAAAAACGCGGAATTTAACGTTGGAAGTGCCTTTTCCACCGGATTTTGTCACTATTCGGACCTCTCCGGGACCTCTGGACGCGGCTCCAACGCGGGCGATGATTTTTGATGGGGATTTCCACCTGGAAATCGTATTTTTCTCTATTTCCGGGGTCCACGACTTTATCTAGGTCGATTTAGAGGCGTTAATTCCAAATTTTTTGATTAGAAACCCCCTTTTTTAGCCTTTCTAACCCCAAATTCTCACTAACTTCATACTCCACAAACTATCGATGCCACAAATGAACAGCATGATCACATCGCTCTGATCACATCCTAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCAC</canonical>
            <polymorphic>TGTCTATTTTGAGTTGGTTTCAGCCATTTTAAAGCTATTTTCAGCTATTTTATAGTCAATTTCAAGCTTATTTTAAGCATACTTTCAGCTATTTTCCACAATTTCAAGCATATTTTCAGTCATTTCCCAGAAATTTCAGTCTATTTTTAGCAATTTTCAGCATATTTTAAAGCGTTTCAAGTCTGTTTTCAGCCATTTTCAGCATTTTCAAGCCCACCTGAATCTGTGGAACACTCCTTATCGCCTCTCTCCCAGGCACCGTTCTTGTCTCATCGACCCAAACCGCAGATTCCTCCAACGGACCGATTTGAGTGATAAAAACGCGGAATTTAACGTTGGAAGTGCCTTTTCCACCGGATTTTGTCACTATTCGGACCTCTCCGGGACCTCTGGACGCGGCTCCAACGCGGGCGATGATTTTTGATGGGGATTTCCACCTGGAAATCGTATTTTTCTCTATTTCCGGGGTCCACGACTTTATCTAGGTCGATTTAGAGGCRTTAATTCCAAATTTTTTGATTAGAAACCCCCTTTTTTAGCCTTTCTAACCCCAAATTCTCACTAACTTCATACTCCACAAACTATCGATGCCACAAATGAACAGCATGATCACATCGCTCTGATCACATCCTAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCGATTTGAGTGATAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GGGGTTAGAAAGGCTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GACCGATTTGAGTGATAAAAACGCGGAATTTAACGTTGGAAGTGCCTTTTCCACCGGATTTTGTCACTATTCGGACCTCTCCGGGACCTCTGGACGCGGCTCCAACGCGGGCGATGATTTTTGATGGGGATTTCCACCTGGAAATCGTATTTTTCTCTATTTCCGGGGTCCACGACTTTATCTAGGTCGATTTAGAGGCGTTAATTCCAAATTTTTTGATTAGAAACCCCCTTTTTTAGCCTTTCTAACCCC</canonical_amplicon>
		<polymorphic_amplicon>GACCGATTTGAGTGATAAAAACGCGGAATTTAACGTTGGAAGTGCCTTTTCCACCGGATTTTGTCACTATTCGGACCTCTCCGGGACCTCTGGACGCGGCTCCAACGCGGGCGATGATTTTTGATGGGGATTTCCACCTGGAAATCGTATTTTTCTCTATTTCCGGGGTCCACGACTTTATCTAGGTCGATTTAGAGGCRTTAATTCCAAATTTTTTGATTAGAAACCCCCTTTTTTAGCCTTTCTAACCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6277</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>6090</contig_pos>
        <strand>+</strand>
        <context>TCACATCCTA[A/G]ATTCTCTCCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCGATGCCACAAATGAACAGCATGATCACATCGCTCTGATCACATCCTA</left_flank>
        <right_flank>ATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAGTCTATTTTTAGCAATTTTCAGCATATTTTAAAGCGTTTCAAGTCTGTTTTCAGCCATTTTCAGCATTTTCAAGCCCACCTGAATCTGTGGAACACTCCTTATCGCCTCTCTCCCAGGCACCGTTCTTGTCTCATCGACCCAAACCGCAGATTCCTCCAACGGACCGATTTGAGTGATAAAAACGCGGAATTTAACGTTGGAAGTGCCTTTTCCACCGGATTTTGTCACTATTCGGACCTCTCCGGGACCTCTGGACGCGGCTCCAACGCGGGCGATGATTTTTGATGGGGATTTCCACCTGGAAATCGTATTTTTCTCTATTTCCGGGGTCCACGACTTTATCTAGGTCGATTTAGAGGCGTTAATTCCAAATTTTTTGATTAGAAACCCCCTTTTTTAGCCTTTCTAACCCCAAATTCTCACTAACTTCATACTCCACAAACTATCGATGCCACAAATGAACAGCATGATCACATCGCTCTGATCACATCCTAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCC</canonical>
            <polymorphic>TTCAGTCTATTTTTAGCAATTTTCAGCATATTTTAAAGCGTTTCAAGTCTGTTTTCAGCCATTTTCAGCATTTTCAAGCCCACCTGAATCTGTGGAACACTCCTTATCGCCTCTCTCCCAGGCACCGTTCTTGTCTCATCGACCCAAACCGCAGATTCCTCCAACGGACCGATTTGAGTGATAAAAACGCGGAATTTAACGTTGGAAGTGCCTTTTCCACCGGATTTTGTCACTATTCGGACCTCTCCGGGACCTCTGGACGCGGCTCCAACGCGGGCGATGATTTTTGATGGGGATTTCCACCTGGAAATCGTATTTTTCTCTATTTCCGGGGTCCACGACTTTATCTAGGTCGATTTAGAGGCGTTAATTCCAAATTTTTTGATTAGAAACCCCCTTTTTTAGCCTTTCTAACCCCAAATTCTCACTAACTTCATACTCCACAAACTATCGATGCCACAAATGAACAGCATGATCACATCGCTCTGATCACATCCTARATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>192 189 183 150 80 70 60 44 14 12 6</canonical_bands>
                <polymorphic_bands>192 189 183 150 150 60 44 14 12 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>176 175 166 144 80 70 60 44 23 17 14 12 7 6 6</canonical_bands>
                <polymorphic_bands>176 175 166 150 144 60 44 23 17 14 12 7 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTATCGATGCCACAAATG</pcr_primer_p1>
		<pcr_primer_p2>AGGCGGTTTTTAATGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>AACTATCGATGCCACAAATGAACAGCATGATCACATCGCTCTGATCACATCCTAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCT</canonical_amplicon>
		<polymorphic_amplicon>AACTATCGATGCCACAAATGAACAGCATGATCACATCGCTCTGATCACATCCTARATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6278</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>6197</contig_pos>
        <strand>+</strand>
        <context>CAGTCGGCGA[C/T]AACCCTGTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGA</left_flank>
        <right_flank>AACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCCTCTCTCCCAGGCACCGTTCTTGTCTCATCGACCCAAACCGCAGATTCCTCCAACGGACCGATTTGAGTGATAAAAACGCGGAATTTAACGTTGGAAGTGCCTTTTCCACCGGATTTTGTCACTATTCGGACCTCTCCGGGACCTCTGGACGCGGCTCCAACGCGGGCGATGATTTTTGATGGGGATTTCCACCTGGAAATCGTATTTTTCTCTATTTCCGGGGTCCACGACTTTATCTAGGTCGATTTAGAGGCGTTAATTCCAAATTTTTTGATTAGAAACCCCCTTTTTTAGCCTTTCTAACCCCAAATTCTCACTAACTTCATACTCCACAAACTATCGATGCCACAAATGAACAGCATGATCACATCGCTCTGATCACATCCTAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAA</canonical>
            <polymorphic>CGCCTCTCTCCCAGGCACCGTTCTTGTCTCATCGACCCAAACCGCAGATTCCTCCAACGGACCGATTTGAGTGATAAAAACGCGGAATTTAACGTTGGAAGTGCCTTTTCCACCGGATTTTGTCACTATTCGGACCTCTCCGGGACCTCTGGACGCGGCTCCAACGCGGGCGATGATTTTTGATGGGGATTTCCACCTGGAAATCGTATTTTTCTCTATTTCCGGGGTCCACGACTTTATCTAGGTCGATTTAGAGGCGTTAATTCCAAATTTTTTGATTAGAAACCCCCTTTTTTAGCCTTTCTAACCCCAAATTCTCACTAACTTCATACTCCACAAACTATCGATGCCACAAATGAACAGCATGATCACATCGCTCTGATCACATCCTAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGAYAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAACAGCATGATCACATC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGAGGCGGTTTTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATGAACAGCATGATCACATCGCTCTGATCACATCCTAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AATGAACAGCATGATCACATCGCTCTGATCACATCCTAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGAYAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6279</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>6230</contig_pos>
        <strand>+</strand>
        <context>GTCTCTCCCC[A/G]AAATTCGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCC</left_flank>
        <right_flank>AAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACCCAAACCGCAGATTCCTCCAACGGACCGATTTGAGTGATAAAAACGCGGAATTTAACGTTGGAAGTGCCTTTTCCACCGGATTTTGTCACTATTCGGACCTCTCCGGGACCTCTGGACGCGGCTCCAACGCGGGCGATGATTTTTGATGGGGATTTCCACCTGGAAATCGTATTTTTCTCTATTTCCGGGGTCCACGACTTTATCTAGGTCGATTTAGAGGCGTTAATTCCAAATTTTTTGATTAGAAACCCCCTTTTTTAGCCTTTCTAACCCCAAATTCTCACTAACTTCATACTCCACAAACTATCGATGCCACAAATGAACAGCATGATCACATCGCTCTGATCACATCCTAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACG</canonical>
            <polymorphic>GACCCAAACCGCAGATTCCTCCAACGGACCGATTTGAGTGATAAAAACGCGGAATTTAACGTTGGAAGTGCCTTTTCCACCGGATTTTGTCACTATTCGGACCTCTCCGGGACCTCTGGACGCGGCTCCAACGCGGGCGATGATTTTTGATGGGGATTTCCACCTGGAAATCGTATTTTTCTCTATTTCCGGGGTCCACGACTTTATCTAGGTCGATTTAGAGGCGTTAATTCCAAATTTTTTGATTAGAAACCCCCTTTTTTAGCCTTTCTAACCCCAAATTCTCACTAACTTCATACTCCACAAACTATCGATGCCACAAATGAACAGCATGATCACATCGCTCTGATCACATCCTAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCRAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAACAGCATGATCACATC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGAGGCGGTTTTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATGAACAGCATGATCACATCGCTCTGATCACATCCTAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AATGAACAGCATGATCACATCGCTCTGATCACATCCTAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCRAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6280</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>6270</contig_pos>
        <strand>+</strand>
        <context>TAGAAACATG[A/G]AAAATCATTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATG</left_flank>
        <right_flank>AAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAAAACGCGGAATTTAACGTTGGAAGTGCCTTTTCCACCGGATTTTGTCACTATTCGGACCTCTCCGGGACCTCTGGACGCGGCTCCAACGCGGGCGATGATTTTTGATGGGGATTTCCACCTGGAAATCGTATTTTTCTCTATTTCCGGGGTCCACGACTTTATCTAGGTCGATTTAGAGGCGTTAATTCCAAATTTTTTGATTAGAAACCCCCTTTTTTAGCCTTTCTAACCCCAAATTCTCACTAACTTCATACTCCACAAACTATCGATGCCACAAATGAACAGCATGATCACATCGCTCTGATCACATCCTAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCC</canonical>
            <polymorphic>ATAAAAACGCGGAATTTAACGTTGGAAGTGCCTTTTCCACCGGATTTTGTCACTATTCGGACCTCTCCGGGACCTCTGGACGCGGCTCCAACGCGGGCGATGATTTTTGATGGGGATTTCCACCTGGAAATCGTATTTTTCTCTATTTCCGGGGTCCACGACTTTATCTAGGTCGATTTAGAGGCGTTAATTCCAAATTTTTTGATTAGAAACCCCCTTTTTTAGCCTTTCTAACCCCAAATTCTCACTAACTTCATACTCCACAAACTATCGATGCCACAAATGAACAGCATGATCACATCGCTCTGATCACATCCTAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGRAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCTCCAAACCTTCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TAGGTGAAAATCAGTGAGAAATG</pcr_primer_p2>
		<pcr_amplicon_size>299</pcr_amplicon_size>
		<canonical_amplicon>AAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTA</canonical_amplicon>
		<polymorphic_amplicon>AAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGRAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6281</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>6870</contig_pos>
        <strand>+</strand>
        <context>CGAAAAGAGC[A/G]AATAAACAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGC</left_flank>
        <right_flank>AATAAACAGATTGGTCTAGTGGTGGATCTGACGAATACCGATCGATATTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGCAAATAAACAGATTGGTCTAGTGGTGGATCTGACGAATACCGATCGATATTATAAGAAGACCGAGTGGGCGGATCATGGGGTTAAGTACCTGTAAGTGGCCCATTTTTGGCCTGGAAAGTTGGAAAATGACCCAAAAATTGTTTAGAAAACTCAATTGTCCCGGTCACGAGGTGAACGAACGCGAGGATTTGGTCCAGGACTTCATTAAAGCCGTCAAAGAGTTCGTTGAGGATCCGGAGAACGGTAAATAGGTTTTTTAATACAAAAATTTGAAAAAAGCGATATTCAGAGGGAAAACTGGTTGGCGTACACTGTACACATGGGCTCAATCGAACGGGCTATCTGATTTGTCGATATATGATAGATATCGATGGATATACGGCGGCCGATGCGATATCCAGTAAGGAAATTGCTTAAAAATAGAGGAAATCTAACTAAAAAATGAATTTTTCAGCCTGAAAATTCTCAAAAATTGGGAATTTCAGACTATTTTCAGCGAAA</canonical>
            <polymorphic>ACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGCRAATAAACAGATTGGTCTAGTGGTGGATCTGACGAATACCGATCGATATTATAAGAAGACCGAGTGGGCGGATCATGGGGTTAAGTACCTGTAAGTGGCCCATTTTTGGCCTGGAAAGTTGGAAAATGACCCAAAAATTGTTTAGAAAACTCAATTGTCCCGGTCACGAGGTGAACGAACGCGAGGATTTGGTCCAGGACTTCATTAAAGCCGTCAAAGAGTTCGTTGAGGATCCGGAGAACGGTAAATAGGTTTTTTAATACAAAAATTTGAAAAAAGCGATATTCAGAGGGAAAACTGGTTGGCGTACACTGTACACATGGGCTCAATCGAACGGGCTATCTGATTTGTCGATATATGATAGATATCGATGGATATACGGCGGCCGATGCGATATCCAGTAAGGAAATTGCTTAAAAATAGAGGAAATCTAACTAAAAAATGAATTTTTCAGCCTGAAAATTCTCAAAAATTGGGAATTTCAGACTATTTTCAGCGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCCATTCAAAACTCCACTC</pcr_primer_p1>
		<pcr_primer_p2>TCTAAACAATTTTTGGGTCATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGCAAATAAACAGATTGGTCTAGTGGTGGATCTGACGAATACCGATCGATATTATAAGAAGACCGAGTGGGCGGATCATGGGGTTAAGTACCTGTAAGTGGCCCATTTTTGGCCTGGAAAGTTGGAAAATGACCCAAAAATTGTTTAGA</canonical_amplicon>
		<polymorphic_amplicon>GTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGCRAATAAACAGATTGGTCTAGTGGTGGATCTGACGAATACCGATCGATATTATAAGAAGACCGAGTGGGCGGATCATGGGGTTAAGTACCTGTAAGTGGCCCATTTTTGGCCTGGAAAGTTGGAAAATGACCCAAAAATTGTTTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6282</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>6735</contig_pos>
        <strand>+</strand>
        <context>TCTACGAYAA[C/T]GTCGGTCGCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAA</left_flank>
        <right_flank>GTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGCAAATAAACAGATTGGTCTAGTGGTGGATCTGACGAATACCGATCGATATTATAAGAAGACCGAGTGGGCGGATCATGGGGTTAAGTACCTGTAAGTGGCCCATTTTTGGCCTGGAAAGTTGGAAAATGACCCAAAAATTGTTTAGAAAACTCAATTGTCCCGGTCACGAGGTGAACGAACGCGAGGATTTGGTCCAGGACTTCATTAAAGCCGTCAAAGAGTTCGTTGAGGATCCGGAGAACGGTAAATAGGTTTTTTAATACAAAAATTTGAAAAAAGCGATATTCAGAGGGAAAACTGGTTGGCGTACACTGTACACATGGGCTCAATCGAACGGGCTATCTGATTTGTCGATATATGATAGAT</canonical>
            <polymorphic>CGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAAYGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGCAAATAAACAGATTGGTCTAGTGGTGGATCTGACGAATACCGATCGATATTATAAGAAGACCGAGTGGGCGGATCATGGGGTTAAGTACCTGTAAGTGGCCCATTTTTGGCCTGGAAAGTTGGAAAATGACCCAAAAATTGTTTAGAAAACTCAATTGTCCCGGTCACGAGGTGAACGAACGCGAGGATTTGGTCCAGGACTTCATTAAAGCCGTCAAAGAGTTCGTTGAGGATCCGGAGAACGGTAAATAGGTTTTTTAATACAAAAATTTGAAAAAAGCGATATTCAGAGGGAAAACTGGTTGGCGTACACTGTACACATGGGCTCAATCGAACGGGCTATCTGATTTGTCGATATATGATAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGTTCAATCTAAATCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CACCACTAGACCAATCTGTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGCAAATAAACAGATTGGTCTAGTGGTG</canonical_amplicon>
		<polymorphic_amplicon>TCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAAYGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGCAAATAAACAGATTGGTCTAGTGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6283</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>6732</contig_pos>
        <strand>+</strand>
        <context>GCATCTACGA[C/T]AAYGTCGGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGA</left_flank>
        <right_flank>AATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGCAAATAAACAGATTGGTCTAGTGGTGGATCTGACGAATACCGATCGATATTATAAGAAGACCGAGTGGGCGGATCATGGGGTTAAGTACCTGTAAGTGGCCCATTTTTGGCCTGGAAAGTTGGAAAATGACCCAAAAATTGTTTAGAAAACTCAATTGTCCCGGTCACGAGGTGAACGAACGCGAGGATTTGGTCCAGGACTTCATTAAAGCCGTCAAAGAGTTCGTTGAGGATCCGGAGAACGGTAAATAGGTTTTTTAATACAAAAATTTGAAAAAAGCGATATTCAGAGGGAAAACTGGTTGGCGTACACTGTACACATGGGCTCAATCGAACGGGCTATCTGATTTGTCGATATATGATA</canonical>
            <polymorphic>ATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGAYAATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGCAAATAAACAGATTGGTCTAGTGGTGGATCTGACGAATACCGATCGATATTATAAGAAGACCGAGTGGGCGGATCATGGGGTTAAGTACCTGTAAGTGGCCCATTTTTGGCCTGGAAAGTTGGAAAATGACCCAAAAATTGTTTAGAAAACTCAATTGTCCCGGTCACGAGGTGAACGAACGCGAGGATTTGGTCCAGGACTTCATTAAAGCCGTCAAAGAGTTCGTTGAGGATCCGGAGAACGGTAAATAGGTTTTTTAATACAAAAATTTGAAAAAAGCGATATTCAGAGGGAAAACTGGTTGGCGTACACTGTACACATGGGCTCAATCGAACGGGCTATCTGATTTGTCGATATATGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGTTCAATCTAAATCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CACCACTAGACCAATCTGTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGCAAATAAACAGATTGGTCTAGTGGTG</canonical_amplicon>
		<polymorphic_amplicon>TCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGAYAATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGCAAATAAACAGATTGGTCTAGTGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6284</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>6677</contig_pos>
        <strand>+</strand>
        <context>TTTCTCTAAT[G/T]TTTGAAATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAAT</left_flank>
        <right_flank>TTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGCAAATAAACAGATTGGTCTAGTGGTGGATCTGACGAATACCGATCGATATTATAAGAAGACCGAGTGGGCGGATCATGGGGTTAAGTACCTGTAAGTGGCCCATTTTTGGCCTGGAAAGTTGGAAAATGACCCAAAAATTGTTTAGAAAACTCAATTGTCCCGGTCACGAGGTGAACGAACGCGAGGATTTGGTCCAGGACTTCATTAAAGCCGTCAAAGAGTTCGTTGAGGATCCGGAGAACGGTAAATAGGTTTTTTAATACAAAAATTTGAAAAAAGCGATATTCAGAGGGAAAACTGGTTGGCGT</canonical>
            <polymorphic>CCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATKTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGCAAATAAACAGATTGGTCTAGTGGTGGATCTGACGAATACCGATCGATATTATAAGAAGACCGAGTGGGCGGATCATGGGGTTAAGTACCTGTAAGTGGCCCATTTTTGGCCTGGAAAGTTGGAAAATGACCCAAAAATTGTTTAGAAAACTCAATTGTCCCGGTCACGAGGTGAACGAACGCGAGGATTTGGTCCAGGACTTCATTAAAGCCGTCAAAGAGTTCGTTGAGGATCCGGAGAACGGTAAATAGGTTTTTTAATACAAAAATTTGAAAAAAGCGATATTCAGAGGGAAAACTGGTTGGCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTAGCTATTCCGGCTGTA</pcr_primer_p1>
		<pcr_primer_p2>AACACTGAATTGTAGCTCTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>TTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATKTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6285</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>6587</contig_pos>
        <strand></strand>
        <context>AATTCRAAAA[A/T]TCCTAATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAA</left_flank>
        <right_flank>TCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGCAAATAAACAGATTGGTCTAGTGGTGGATCTGACGAATACCGATCGATATTATAAGAAGACCGAGTGGGCGGATCATGGGGTTAAGTACCTGTAAGTGGCCCATTTTTGGCCTGGAAAGTTGGAAAATGACCCAAAAATTGTTTAGAAAACTCAATTGTCCCGGTCACGAGGTGAACGAACGCGAGGATTTGGTCCAGGACTTCATTAAAGCCGTCAAA</canonical>
            <polymorphic>TAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAWTCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGCAAATAAACAGATTGGTCTAGTGGTGGATCTGACGAATACCGATCGATATTATAAGAAGACCGAGTGGGCGGATCATGGGGTTAAGTACCTGTAAGTGGCCCATTTTTGGCCTGGAAAGTTGGAAAATGACCCAAAAATTGTTTAGAAAACTCAATTGTCCCGGTCACGAGGTGAACGAACGCGAGGATTTGGTCCAGGACTTCATTAAAGCCGTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCACTGATTTTCACCTAGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TGCGGATGTTTTGAATAATAA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCA</canonical_amplicon>
		<polymorphic_amplicon>TCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAWTCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6286</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>6582</contig_pos>
        <strand></strand>
        <context>GTRWAAATTC[A/G]AAAAWTCCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTC</left_flank>
        <right_flank>AAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCCTAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGCAAATAAACAGATTGGTCTAGTGGTGGATCTGACGAATACCGATCGATATTATAAGAAGACCGAGTGGGCGGATCATGGGGTTAAGTACCTGTAAGTGGCCCATTTTTGGCCTGGAAAGTTGGAAAATGACCCAAAAATTGTTTAGAAAACTCAATTGTCCCGGTCACGAGGTGAACGAACGCGAGGATTTGGTCCAGGACTTCATTAAAGCCG</canonical>
            <polymorphic>CATCCTAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCRAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGCAAATAAACAGATTGGTCTAGTGGTGGATCTGACGAATACCGATCGATATTATAAGAAGACCGAGTGGGCGGATCATGGGGTTAAGTACCTGTAAGTGGCCCATTTTTGGCCTGGAAAGTTGGAAAATGACCCAAAAATTGTTTAGAAAACTCAATTGTCCCGGTCACGAGGTGAACGAACGCGAGGATTTGGTCCAGGACTTCATTAAAGCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCACTGATTTTCACCTAGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TGCGGATGTTTTGAATAATAA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCA</canonical_amplicon>
		<polymorphic_amplicon>TCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCRAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6287</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>6485</contig_pos>
        <strand>+</strand>
        <context>CARGSGATTT[C/T]CAGCTAGATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTT</left_flank>
        <right_flank>CAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTTTTTAGCCTTTCTAACCCCAAATTCTCACTAACTTCATACTCCACAAACTATCGATGCCACAAATGAACAGCATGATCACATCGCTCTGATCACATCCTAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGCAAATAAACAGATTGGTCTAGTGGTGGATCTGACGAATACCGATCGATATTATAAGAAGACCGAGTGGGCGGATCATGGGGTTAAGTACCTGTAAGTGGCCCATTTTTGGCCTGGAA</canonical>
            <polymorphic>CCTTTTTTAGCCTTTCTAACCCCAAATTCTCACTAACTTCATACTCCACAAACTATCGATGCCACAAATGAACAGCATGATCACATCGCTCTGATCACATCCTAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTYCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGCAAATAAACAGATTGGTCTAGTGGTGGATCTGACGAATACCGATCGATATTATAAGAAGACCGAGTGGGCGGATCATGGGGTTAAGTACCTGTAAGTGGCCCATTTTTGGCCTGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCCACTTCTGGTCTCCT</pcr_primer_p1>
		<pcr_primer_p2>TAGTTATCTCTGTGACGATGATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTA</canonical_amplicon>
		<polymorphic_amplicon>AAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTYCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6288</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>6479</contig_pos>
        <strand>+</strand>
        <context>AGTTTTCARG[C/G]GATTTYCAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGG</left_flank>
        <right_flank>GATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACCCCCTTTTTTAGCCTTTCTAACCCCAAATTCTCACTAACTTCATACTCCACAAACTATCGATGCCACAAATGAACAGCATGATCACATCGCTCTGATCACATCCTAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGCAAATAAACAGATTGGTCTAGTGGTGGATCTGACGAATACCGATCGATATTATAAGAAGACCGAGTGGGCGGATCATGGGGTTAAGTACCTGTAAGTGGCCCATTTTTGGC</canonical>
            <polymorphic>AAACCCCCTTTTTTAGCCTTTCTAACCCCAAATTCTCACTAACTTCATACTCCACAAACTATCGATGCCACAAATGAACAGCATGATCACATCGCTCTGATCACATCCTAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGSGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGCAAATAAACAGATTGGTCTAGTGGTGGATCTGACGAATACCGATCGATATTATAAGAAGACCGAGTGGGCGGATCATGGGGTTAAGTACCTGTAAGTGGCCCATTTTTGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAAAATCCACTTCTGGTCT</pcr_primer_p1>
		<pcr_primer_p2>TATCTCTGTGACGATGATGATTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATA</canonical_amplicon>
		<polymorphic_amplicon>CTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGSGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6289</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>6445</contig_pos>
        <strand></strand>
        <context>TTGAATATCT[T/G]KCATTTCTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCT</left_flank>
        <right_flank>ACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATA</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTAGAGGCGTTAATTCCAAATTTTTTGATTAGAAACCCCCTTTTTTAGCCTTTCTAACCCCAAATTCTCACTAACTTCATACTCCACAAACTATCGATGCCACAAATGAACAGCATGATCACATCGCTCTGATCACATCCTAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGCAAATAAACAGATTGGTCTAGTGGTGGATCTGACGAATACCGATCGATATTATAAGAAGACCGAGTGGGCGGATCAT</canonical>
            <polymorphic>ATTTAGAGGCGTTAATTCCAAATTTTTTGATTAGAAACCCCCTTTTTTAGCCTTTCTAACCCCAAATTCTCACTAACTTCATACTCCACAAACTATCGATGCCACAAATGAACAGCATGATCACATCGCTCTGATCACATCCTAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTKACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGCAAATAAACAGATTGGTCTAGTGGTGGATCTGACGAATACCGATCGATATTATAAGAAGACCGAGTGGGCGGATCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAAAATCCACTTCTGGTCT</pcr_primer_p1>
		<pcr_primer_p2>TATCTCTGTGACGATGATGATTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATA</canonical_amplicon>
		<polymorphic_amplicon>CTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTKACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6292</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>8244</contig_pos>
        <strand></strand>
        <context>TTTTATCACA[T/G]TCACCCTTGY</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AAGAAGAGGAATCCGAGGAAAAATGATCTAAATTTGTCATTTTTATCACA</left_flank>
        <right_flank>TCACCCTTGTTTTTTTTTTGAATTGTTTCTCTATGCTGAAAATTGATTTT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTCAACAGAAATGTTGTCTGAAAAATTAAAAAAAATTTTTTGAGAGAAAATTTGACTTAAAAATCCCCAGAATTGGCTAAAAATCGATTTTTTAGCCTGAAAATCCATCAAAAACGGAGATTTTCCGACTATTTTCAGCAGAAATTTTGTCTGAAAATTCCATTTTTCCGCTTTTTTGCAGGAAATTTTGATCTAAAAATCACAAAAATTGGCTGAATTTTGTCTAGAAGACGTTAAAACTGGAAAAGTTCTGATTTTCTTCAATTTTGCAGGATTCGAATACTATCGTGGACATCCAATGGAGCGGGAACACTACAAGGTGTCGCTTTACGAGGCAGAATTGCGAAAAAATCAGAGAAAGAACGAGGAGGCATCTGGAGATTCAGAAGACGTTGTGGAGTCGAAGGATTCAGAAGAGGCGGCGACGAAAGATCCAGAAGACGTGAAAGAAGAGGAATCCGAGGAAAAATGATCTAAATTTGTCATTTTTATCACATTCACCCTTGTTTTTTTTTTGAATTGTTTCTCTATGCTGAAAATTGATTTTATTGTCATCTATATCCTCCTCAACTATTCGGGTACTACACACAAAAATACACGAATTGTTTTAATAAATTTTTTTTTTCAAAAAATGGATTAAAAACGGAAATGATAAAAATTCCGGGGTGGGAAATTCGAGTTGCCTGGTAGATTGTGATGATCGGTCTGAAAATTGGGAGAAAATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGAAATTTGAGATTTCAAAAAACCAAAATTCGAAAAAAAAATCTGAAATTCAGAATTCTCGGAATTTGAAGAAATTTGAAAAGTCTGGAAATTTTCAGAGTTTCAGAAAAAAAAACTGAAAATCGGAATATTAGAAAAAAATCCAATAAAATTCTGAAATTTTTGAAATTCAGAATTTCTAAAATTCCGCGAAATTCAAATTTTCGAAAATCTGAAAAGAAATTTTATTTATTTAAATT</canonical>
            <polymorphic>ATTTTCAACAGAAATGTTGTCTGAAAAATTAAAAAAAATTTTTTGAGAGAAAATTTGACTTAAAAATCCCCAGAATTGGCTAAAAATCGATTTTTTAGCCTGAAAATCCATCAAAAACGGAGATTTTCCGACTATTTTCAGCAGAAATTTTGTCTGAAAATTCCATTTTTCCGCTTTTTTGCAGGAAATTTTGATCTAAAAATCACAAAAATTGGCTGAATTTTGTCTAGAAGACGTTAAAACTGGAAAAGTTCTGATTTTCTTCAATTTTGCAGGATTCGAATACTATCGTGGACATCCAATGGAGCGGGAACACTACAAGGTGTCGCTTTACGAGGCAGAATTGCGAAAAAATCAGAGAAAGAACGAGGAGGCATCTGGAGATTCAGAAGACGTTGTGGAGTCGAAGGATTCAGAAGAGGCGGCGACGAAAGATCCAGAAGACGTGAAAGAAGAGGAATCCGAGGAAAAATGATCTAAATTTGTCATTTTTATCACAKTCACCCTTGTTTTTTTTTTGAATTGTTTCTCTATGCTGAAAATTGATTTTATTGTCATCTATATCCTCCTCAACTATTCGGGTACTACACACAAAAATACACGAATTGTTTTAATAAATTTTTTTTTTCAAAAAATGGATTAAAAACGGAAATGATAAAAATTCCGGGGTGGGAAATTCGAGTTGCCTGGTAGATTGTGATGATCGGTCTGAAAATTGGGAGAAAATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGAAATTTGAGATTTCAAAAAACCAAAATTCGAAAAAAAAATCTGAAATTCAGAATTCTCGGAATTTGAAGAAATTTGAAAAGTCTGGAAATTTTCAGAGTTTCAGAAAAAAAAACTGAAAATCGGAATATTAGAAAAAAATCCAATAAAATTCTGAAATTTTTGAAATTCAGAATTTCTAAAATTCCGCGAAATTCAAATTTTCGAAAATCTGAAAAGAAATTTTATTTATTTAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCAGAGAAAGAACGAGGAG</pcr_primer_p1>
		<pcr_primer_p2>TTTGTGTGTAGTACCCGAATAGT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AATCAGAGAAAGAACGAGGAGGCATCTGGAGATTCAGAAGACGTTGTGGAGTCGAAGGATTCAGAAGAGGCGGCGACGAAAGATCCAGAAGACGTGAAAGAAGAGGAATCCGAGGAAAAATGATCTAAATTTGTCATTTTTATCACATTCACCCTTGTTTTTTTTTTGAATTGTTTCTCTATGCTGAAAATTGATTTTATTGTCATCTATATCCTCCTCAACTATTCGGGTACTACACACAAA</canonical_amplicon>
		<polymorphic_amplicon>AATCAGAGAAAGAACGAGGAGGCATCTGGAGATTCAGAAGACGTTGTGGAGTCGAAGGATTCAGAAGAGGCGGCGACGAAAGATCCAGAAGACGTGAAAGAAGAGGAATCCGAGGAAAAATGATCTAAATTTGTCATTTTTATCACAKTCACCCTTGTTTTTTTTTTGAATTGTTTCTCTATGCTGAAAATTGATTTTATTGTCATCTATATCCTCCTCAACTATTCGGGTACTACACACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6293</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>59971</contig_pos>
        <strand>+</strand>
        <context>TTTTGAGGTC[A/G]AAAATTGGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATTGGAAAAAAGGAGCGCAGGGTAAAGGTAAATGAGTTTTTTGAGGTC</left_flank>
        <right_flank>AAAATTGGTGATGAAATTTTTGTCTCTTCTCTGGAGCCAGTTGTTGTAGT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCCCCAAATTACATTTGGTCGAGTGCACTACGGTAGCGCCCATCGCACACCCTTATTAAATATTTTTTGGTTTGCTTGTCAAACAAATTCCAAGACAGCTTTCTAGCTTCATATATCAGGTTAGTGGTCATAGCAACTGAAAATTTTTTTTTCTCGAATTTACTTTTCAAATTTTCGAATTTTCGCGCCTAAAACTTATCCCTATTGATATCCAGTGAAACCCTCTGCGGACCCCGATCAAAGCATCTAGTGTAAAGGAACAACTGACACGAATTTTTGGGGTCCCCCCCCCCGGCCGTTTGAAAATTTTCCGTGCGTGTCTTCGCTCTGGCGGGATTCTGATATCCTTTACATATCAAAATTCTAATCAAATGACATGGATAAACTTATCGCCAGCTGGACCACTGAAACGTACCTAAATGCGTTGACCATTGCTACTGAGTATTTTAATTGGAAAAAAGGAGCGCAGGGTAAAGGTAAATGAGTTTTTTGAGGTCAAAAATTGGTGATGAAATTTTTGTCTCTTCTCTGGAGCCAGTTGTTGTAGTCTTAGGGGTCAAGTGTTGTGGGTTGAAAGTAGAAAAAATGGCTTGAAAAAGAATTAAATAAGTCGAACTAACCTAACTTTTAATCTTGAGCCAATTTATCTCGGTTCCCGTAAAAGATATCAAAACTTTATCAATTGATAAAATATTTTTGATATTATGATTAACATTTTATCAGTTGATCGCTTTTTGATATCTTTCACAGAAATCGAGGTATAAGTGCTCGAAGTTGACAGCTAGAGGGCTATTTTATCTCCAAGTGAACTTTTAAGGTTTGAGCCAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAATGATTCACTGATAAAACGTTTATCACGATTTGAGTAAATTTTAACAGTTGACTATTTTCTGATATCTTTTACAGGAACCTAGATATATAGGCTCGAAGTTGACACACCCTTCTACCACAGGTTCTAAAGGATAGGCT</canonical>
            <polymorphic>CAGCCCCAAATTACATTTGGTCGAGTGCACTACGGTAGCGCCCATCGCACACCCTTATTAAATATTTTTTGGTTTGCTTGTCAAACAAATTCCAAGACAGCTTTCTAGCTTCATATATCAGGTTAGTGGTCATAGCAACTGAAAATTTTTTTTTCTCGAATTTACTTTTCAAATTTTCGAATTTTCGCGCCTAAAACTTATCCCTATTGATATCCAGTGAAACCCTCTGCGGACCCCGATCAAAGCATCTAGTGTAAAGGAACAACTGACACGAATTTTTGGGGTCCCCCCCCCCGGCCGTTTGAAAATTTTCCGTGCGTGTCTTCGCTCTGGCGGGATTCTGATATCCTTTACATATCAAAATTCTAATCAAATGACATGGATAAACTTATCGCCAGCTGGACCACTGAAACGTACCTAAATGCGTTGACCATTGCTACTGAGTATTTTAATTGGAAAAAAGGAGCGCAGGGTAAAGGTAAATGAGTTTTTTGAGGTCRAAAATTGGTGATGAAATTTTTGTCTCTTCTCTGGAGCCAGTTGTTGTAGTCTTAGGGGTCAAGTGTTGTGGGTTGAAAGTAGAAAAAATGGCTTGAAAAAGAATTAAATAAGTCGAACTAACCTAACTTTTAATCTTGAGCCAATTTATCTCGGTTCCCGTAAAAGATATCAAAACTTTATCAATTGATAAAATATTTTTGATATTATGATTAACATTTTATCAGTTGATCGCTTTTTGATATCTTTCACAGAAATCGAGGTATAAGTGCTCGAAGTTGACAGCTAGAGGGCTATTTTATCTCCAAGTGAACTTTTAAGGTTTGAGCCAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAATGATTCACTGATAAAACGTTTATCACGATTTGAGTAAATTTTAACAGTTGACTATTTTCTGATATCTTTTACAGGAACCTAGATATATAGGCTCGAAGTTGACACACCCTTCTACCACAGGTTCTAAAGGATAGGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCAAATGACATGGATAAACTT</pcr_primer_p1>
		<pcr_primer_p2>TTCGACTTATTTAATTCTTTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCAAATGACATGGATAAACTTATCGCCAGCTGGACCACTGAAACGTACCTAAATGCGTTGACCATTGCTACTGAGTATTTTAATTGGAAAAAAGGAGCGCAGGGTAAAGGTAAATGAGTTTTTTGAGGTCAAAAATTGGTGATGAAATTTTTGTCTCTTCTCTGGAGCCAGTTGTTGTAGTCTTAGGGGTCAAGTGTTGTGGGTTGAAAGTAGAAAAAATGGCTTGAAAAAGAATTAAATAAGTCGAA</canonical_amplicon>
		<polymorphic_amplicon>AATCAAATGACATGGATAAACTTATCGCCAGCTGGACCACTGAAACGTACCTAAATGCGTTGACCATTGCTACTGAGTATTTTAATTGGAAAAAAGGAGCGCAGGGTAAAGGTAAATGAGTTTTTTGAGGTCRAAAATTGGTGATGAAATTTTTGTCTCTTCTCTGGAGCCAGTTGTTGTAGTCTTAGGGGTCAAGTGTTGTGGGTTGAAAGTAGAAAAAATGGCTTGAAAAAGAATTAAATAAGTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6294</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>63810</contig_pos>
        <strand>+</strand>
        <context>CATGATGATG[C/T]CAGGGAAGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCAGATTTTTTCTTAATGGAAATTTGATTTTTTGGAAACATGATGATG</left_flank>
        <right_flank>CAGGGAAGAGGGACTAAAAATGGAAGGGGAAAACGATTTTTTTTTGAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTAGAAGATATCAAAAATTTTTCAACTGATAAAATATTGATTATTTTATGATAAACATTTTATCAGTTGACCACTTTTTGATATCTTTCACAGAAATTGTGATGATTGAGGTCAAAGTTGACGGGCTCGGTGTTGAGACCCAAAAACTTGATTATTTCGAATTTTTTGAAATTAAAGCTCTGGCTTAGAAACCACAAAATTCATCATTTTTCAACCTTTCTCTTCCTCTTCCACCTCATTTTTTTTCTCTGAAAATGTCAACAAGTTGCTCATTTCTGAAAATTTTTGCTTTTGAATTCAAAATTTTGAAATGATGTTATCAAAAAACATGACATTTATCTTCTTCAGTCAGATGGAAAATATCATGTTATTCATCTGAAAAAATCAAATTACCGAGTGAAGTTTGAAGCCAAAATATGAAAATTCTATTGAGGGAAAAAACAGGTGTTTCAGATTTTTTCTTAATGGAAATTTGATTTTTTGGAAACATGATGATGCCAGGGAAGAGGGACTAAAAATGGAAGGGGAAAACGATTTTTTTTTGAAATTCTGAGATTGAATTCATCAGTAATCATTTTGAGATTCAGAAATTCAGAAATTCAGAAATTCTGAAATTCTGAAATTCTGAAATTCAAATTTTCAGAAAGTCAGAAATTCGGAAATTCGGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCTGAAATTCAAATTTTCAGAAAGTCAGAAATTCGGAAATTCGGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCTGAAATTCTGAAATTCTGAAATTCAAATTTTCAGAAAGTCAGAAATTCGGAAATTCGGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCTGAAATTCAAATT</canonical>
            <polymorphic>CTGTAGAAGATATCAAAAATTTTTCAACTGATAAAATATTGATTATTTTATGATAAACATTTTATCAGTTGACCACTTTTTGATATCTTTCACAGAAATTGTGATGATTGAGGTCAAAGTTGACGGGCTCGGTGTTGAGACCCAAAAACTTGATTATTTCGAATTTTTTGAAATTAAAGCTCTGGCTTAGAAACCACAAAATTCATCATTTTTCAACCTTTCTCTTCCTCTTCCACCTCATTTTTTTTCTCTGAAAATGTCAACAAGTTGCTCATTTCTGAAAATTTTTGCTTTTGAATTCAAAATTTTGAAATGATGTTATCAAAAAACATGACATTTATCTTCTTCAGTCAGATGGAAAATATCATGTTATTCATCTGAAAAAATCAAATTACCGAGTGAAGTTTGAAGCCAAAATATGAAAATTCTATTGAGGGAAAAAACAGGTGTTTCAGATTTTTTCTTAATGGAAATTTGATTTTTTGGAAACATGATGATGYCAGGGAAGAGGGACTAAAAATGGAAGGGGAAAACGATTTTTTTTTGAAATTCTGAGATTGAATTCATCAGTAATCATTTTGAGATTCAGAAATTCAGAAATTCAGAAATTCTGAAATTCTGAAATTCTGAAATTCAAATTTTCAGAAAGTCAGAAATTCGGAAATTCGGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCTGAAATTCAAATTTTCAGAAAGTCAGAAATTCGGAAATTCGGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCTGAAATTCTGAAATTCTGAAATTCAAATTTTCAGAAAGTCAGAAATTCGGAAATTCGGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCTGAAATTCAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGACATTTATCTTCTTCAGTCA</pcr_primer_p1>
		<pcr_primer_p2>TGATGAATTCAATCTCAGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CATGACATTTATCTTCTTCAGTCAGATGGAAAATATCATGTTATTCATCTGAAAAAATCAAATTACCGAGTGAAGTTTGAAGCCAAAATATGAAAATTCTATTGAGGGAAAAAACAGGTGTTTCAGATTTTTTCTTAATGGAAATTTGATTTTTTGGAAACATGATGATGCCAGGGAAGAGGGACTAAAAATGGAAGGGGAAAACGATTTTTTTTTGAAATTCTGAGATTGAATTCATCA</canonical_amplicon>
		<polymorphic_amplicon>CATGACATTTATCTTCTTCAGTCAGATGGAAAATATCATGTTATTCATCTGAAAAAATCAAATTACCGAGTGAAGTTTGAAGCCAAAATATGAAAATTCTATTGAGGGAAAAAACAGGTGTTTCAGATTTTTTCTTAATGGAAATTTGATTTTTTGGAAACATGATGATGYCAGGGAAGAGGGACTAAAAATGGAAGGGGAAAACGATTTTTTTTTGAAATTCTGAGATTGAATTCATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6295</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>63765</contig_pos>
        <strand>+</strand>
        <context>AGGTGTTTCA[A/G]ATTTTTTCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGAAGCCAAAATATGAAAATTCTATTGAGGGAAAAAACAGGTGTTTCA</left_flank>
        <right_flank>ATTTTTTCTTAATGGAAATTTGATTTTTTGGAAACATGATGATGCCAGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCAGATTTCTAGCCGTTCAGCTTCAAGCCGAGTTATCTCGATTACTGTAGAAGATATCAAAAATTTTTCAACTGATAAAATATTGATTATTTTATGATAAACATTTTATCAGTTGACCACTTTTTGATATCTTTCACAGAAATTGTGATGATTGAGGTCAAAGTTGACGGGCTCGGTGTTGAGACCCAAAAACTTGATTATTTCGAATTTTTTGAAATTAAAGCTCTGGCTTAGAAACCACAAAATTCATCATTTTTCAACCTTTCTCTTCCTCTTCCACCTCATTTTTTTTCTCTGAAAATGTCAACAAGTTGCTCATTTCTGAAAATTTTTGCTTTTGAATTCAAAATTTTGAAATGATGTTATCAAAAAACATGACATTTATCTTCTTCAGTCAGATGGAAAATATCATGTTATTCATCTGAAAAAATCAAATTACCGAGTGAAGTTTGAAGCCAAAATATGAAAATTCTATTGAGGGAAAAAACAGGTGTTTCAGATTTTTTCTTAATGGAAATTTGATTTTTTGGAAACATGATGATGCCAGGGAAGAGGGACTAAAAATGGAAGGGGAAAACGATTTTTTTTTGAAATTCTGAGATTGAATTCATCAGTAATCATTTTGAGATTCAGAAATTCAGAAATTCAGAAATTCTGAAATTCTGAAATTCTGAAATTCAAATTTTCAGAAAGTCAGAAATTCGGAAATTCGGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCTGAAATTCAAATTTTCAGAAAGTCAGAAATTCGGAAATTCGGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCTGAAATTCTGAAATTCTGAAATTCAAATTTTCAGAAAGTCAGAAATTCGGAAATTCGGAAATTCAGAAATTCAGAAATTCAGAAATTC</canonical>
            <polymorphic>ACCAGATTTCTAGCCGTTCAGCTTCAAGCCGAGTTATCTCGATTACTGTAGAAGATATCAAAAATTTTTCAACTGATAAAATATTGATTATTTTATGATAAACATTTTATCAGTTGACCACTTTTTGATATCTTTCACAGAAATTGTGATGATTGAGGTCAAAGTTGACGGGCTCGGTGTTGAGACCCAAAAACTTGATTATTTCGAATTTTTTGAAATTAAAGCTCTGGCTTAGAAACCACAAAATTCATCATTTTTCAACCTTTCTCTTCCTCTTCCACCTCATTTTTTTTCTCTGAAAATGTCAACAAGTTGCTCATTTCTGAAAATTTTTGCTTTTGAATTCAAAATTTTGAAATGATGTTATCAAAAAACATGACATTTATCTTCTTCAGTCAGATGGAAAATATCATGTTATTCATCTGAAAAAATCAAATTACCGAGTGAAGTTTGAAGCCAAAATATGAAAATTCTATTGAGGGAAAAAACAGGTGTTTCARATTTTTTCTTAATGGAAATTTGATTTTTTGGAAACATGATGATGCCAGGGAAGAGGGACTAAAAATGGAAGGGGAAAACGATTTTTTTTTGAAATTCTGAGATTGAATTCATCAGTAATCATTTTGAGATTCAGAAATTCAGAAATTCAGAAATTCTGAAATTCTGAAATTCTGAAATTCAAATTTTCAGAAAGTCAGAAATTCGGAAATTCGGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCTGAAATTCAAATTTTCAGAAAGTCAGAAATTCGGAAATTCGGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCTGAAATTCTGAAATTCTGAAATTCAAATTTTCAGAAAGTCAGAAATTCGGAAATTCGGAAATTCAGAAATTCAGAAATTCAGAAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>297 99 75 74 35 27 26 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>297 174 74 35 27 26 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAAAATTTTTGCTTTTGAAT</pcr_primer_p1>
		<pcr_primer_p2>CTTCCATTTTTAGTCCCTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAATTTTTGCTTTTGAATTCAAAATTTTGAAATGATGTTATCAAAAAACATGACATTTATCTTCTTCAGTCAGATGGAAAATATCATGTTATTCATCTGAAAAAATCAAATTACCGAGTGAAGTTTGAAGCCAAAATATGAAAATTCTATTGAGGGAAAAAACAGGTGTTTCAGATTTTTTCTTAATGGAAATTTGATTTTTTGGAAACATGATGATGCCAGGGAAGAGGGACTAAAAATGGAAG</canonical_amplicon>
		<polymorphic_amplicon>CTGAAAATTTTTGCTTTTGAATTCAAAATTTTGAAATGATGTTATCAAAAAACATGACATTTATCTTCTTCAGTCAGATGGAAAATATCATGTTATTCATCTGAAAAAATCAAATTACCGAGTGAAGTTTGAAGCCAAAATATGAAAATTCTATTGAGGGAAAAAACAGGTGTTTCARATTTTTTCTTAATGGAAATTTGATTTTTTGGAAACATGATGATGCCAGGGAAGAGGGACTAAAAATGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6296</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>140633</contig_pos>
        <strand>+</strand>
        <context>ATCTTTTTTT[A/T]AATTGAAACG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAACAGCCATAGACATTTTTTTAAAAATCGGGTTGAATTATCTTTTTTT</left_flank>
        <right_flank>AATTGAAACGGACCAATTTCGGTGCTTTTAATATTGAATAAATTTTTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGGACTCTCAGTTCCTTATTGAGCCCGATGAGCCACCGCCGCCTTATGAGGTAAAGCCATATTTGAAAATTTGAATTTAGCGGGAAAAGAGCTTCCGAATGACTATAAACATGACTGGGTTTCCAAGTTTTGAAGTTTCAAAAAATCAAAAAATTCAAAAAAAAACTTTTTTGAATTTTTTTTCAATTAAAAACCTATAATCTTTTATTTAGACGAATTTAAGATAAATTTCTATTGAATTAATTTTTCAAAAAAAACTTAAAAATTCAAATATTTGCAGGTCGCCCTCCGCATGTGCGCTCCACTGTACGAACGCCTTCGTAGATCAATTTCCTCCCGCTTGGCGTCAATTTCACACTCAAGTTCGAAGGATTTGAAGTCGTTAACGTTGAAAAATAATAATGGAGCGGCTAACAATAACAATAATAATAACAACGAAAACCCAGAAGAACAGCCATAGACATTTTTTTAAAAATCGGGTTGAATTATCTTTTTTTTAATTGAAACGGACCAATTTCGGTGCTTTTAATATTGAATAAATTTTTTTTTCTTTTTTTCTCTCATTTTCAGCGAAAATCGCTGGAATTTGGCGAAATTTCCGCTTTCAAAACTAAATTCAAACTTCCCTCTAGATTACGGTAGACAACAAAGTACCTTTACAACACACTCTACGCGCAATCTTTCTAATTCTCGTTCCAGCTTTGCTCTTGTGTTTTTCGGCCCAAAAATTTTGGTTTTTTGCAAATTTTTGGTGCAAAATTGAGTTTAAAGTCGATATTTGACTTAAATTCACTTTTTTCTTCCAATTTTCAGCAAAAATTTGCGGAAATTCGCTGAAATTTTTCTTTGGGTTACGGTAGACAGAAAAGTTCCCTCACAACAAACTTCACGCGCAATTACACACGTGGCTTTTTCTTGCTCATTTTTGTGTTTTAACCTAATTATTTTTGTGTTTTTGATCTAAAAATATCGGGTTTTCGCTAATGTTACATATAAAA</canonical>
            <polymorphic>AGAGGACTCTCAGTTCCTTATTGAGCCCGATGAGCCACCGCCGCCTTATGAGGTAAAGCCATATTTGAAAATTTGAATTTAGCGGGAAAAGAGCTTCCGAATGACTATAAACATGACTGGGTTTCCAAGTTTTGAAGTTTCAAAAAATCAAAAAATTCAAAAAAAAACTTTTTTGAATTTTTTTTCAATTAAAAACCTATAATCTTTTATTTAGACGAATTTAAGATAAATTTCTATTGAATTAATTTTTCAAAAAAAACTTAAAAATTCAAATATTTGCAGGTCGCCCTCCGCATGTGCGCTCCACTGTACGAACGCCTTCGTAGATCAATTTCCTCCCGCTTGGCGTCAATTTCACACTCAAGTTCGAAGGATTTGAAGTCGTTAACGTTGAAAAATAATAATGGAGCGGCTAACAATAACAATAATAATAACAACGAAAACCCAGAAGAACAGCCATAGACATTTTTTTAAAAATCGGGTTGAATTATCTTTTTTTWAATTGAAACGGACCAATTTCGGTGCTTTTAATATTGAATAAATTTTTTTTTCTTTTTTTCTCTCATTTTCAGCGAAAATCGCTGGAATTTGGCGAAATTTCCGCTTTCAAAACTAAATTCAAACTTCCCTCTAGATTACGGTAGACAACAAAGTACCTTTACAACACACTCTACGCGCAATCTTTCTAATTCTCGTTCCAGCTTTGCTCTTGTGTTTTTCGGCCCAAAAATTTTGGTTTTTTGCAAATTTTTGGTGCAAAATTGAGTTTAAAGTCGATATTTGACTTAAATTCACTTTTTTCTTCCAATTTTCAGCAAAAATTTGCGGAAATTCGCTGAAATTTTTCTTTGGGTTACGGTAGACAGAAAAGTTCCCTCACAACAAACTTCACGCGCAATTACACACGTGGCTTTTTCTTGCTCATTTTTGTGTTTTAACCTAATTATTTTTGTGTTTTTGATCTAAAAATATCGGGTTTTCGCTAATGTTACATATAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>240 189 149 124 86 65 32 29 28 21 19 18</canonical_bands>
                <polymorphic_bands>240 189 149 124 86 65 57 32 21 19 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTTAACGTTGAAAAATAATAATG</pcr_primer_p1>
		<pcr_primer_p2>AGAGGGAAGTTTGAATTTAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTTAACGTTGAAAAATAATAATGGAGCGGCTAACAATAACAATAATAATAACAACGAAAACCCAGAAGAACAGCCATAGACATTTTTTTAAAAATCGGGTTGAATTATCTTTTTTTTAATTGAAACGGACCAATTTCGGTGCTTTTAATATTGAATAAATTTTTTTTTCTTTTTTTCTCTCATTTTCAGCGAAAATCGCTGGAATTTGGCGAAATTTCCGCTTTCAAAACTAAATTCAAACTTCCCTCT</canonical_amplicon>
		<polymorphic_amplicon>CGTTAACGTTGAAAAATAATAATGGAGCGGCTAACAATAACAATAATAATAACAACGAAAACCCAGAAGAACAGCCATAGACATTTTTTTAAAAATCGGGTTGAATTATCTTTTTTTWAATTGAAACGGACCAATTTCGGTGCTTTTAATATTGAATAAATTTTTTTTTCTTTTTTTCTCTCATTTTCAGCGAAAATCGCTGGAATTTGGCGAAATTTCCGCTTTCAAAACTAAATTCAAACTTCCCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6297</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>140782</contig_pos>
        <strand>+</strand>
        <context>CGGTAGACAA[C/G]AAAGTACCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCCGCTTTCAAAACTAAATTCAAACTTCCCTCTAGATTACGGTAGACAA</left_flank>
        <right_flank>AAAGTACCTTTACAACACACTCTACGCGCAATCTTTCTAATTCTCGTTCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAATTCAAAAAAAAACTTTTTTGAATTTTTTTTCAATTAAAAACCTATAATCTTTTATTTAGACGAATTTAAGATAAATTTCTATTGAATTAATTTTTCAAAAAAAACTTAAAAATTCAAATATTTGCAGGTCGCCCTCCGCATGTGCGCTCCACTGTACGAACGCCTTCGTAGATCAATTTCCTCCCGCTTGGCGTCAATTTCACACTCAAGTTCGAAGGATTTGAAGTCGTTAACGTTGAAAAATAATAATGGAGCGGCTAACAATAACAATAATAATAACAACGAAAACCCAGAAGAACAGCCATAGACATTTTTTTAAAAATCGGGTTGAATTATCTTTTTTTTAATTGAAACGGACCAATTTCGGTGCTTTTAATATTGAATAAATTTTTTTTTCTTTTTTTCTCTCATTTTCAGCGAAAATCGCTGGAATTTGGCGAAATTTCCGCTTTCAAAACTAAATTCAAACTTCCCTCTAGATTACGGTAGACAACAAAGTACCTTTACAACACACTCTACGCGCAATCTTTCTAATTCTCGTTCCAGCTTTGCTCTTGTGTTTTTCGGCCCAAAAATTTTGGTTTTTTGCAAATTTTTGGTGCAAAATTGAGTTTAAAGTCGATATTTGACTTAAATTCACTTTTTTCTTCCAATTTTCAGCAAAAATTTGCGGAAATTCGCTGAAATTTTTCTTTGGGTTACGGTAGACAGAAAAGTTCCCTCACAACAAACTTCACGCGCAATTACACACGTGGCTTTTTCTTGCTCATTTTTGTGTTTTAACCTAATTATTTTTGTGTTTTTGATCTAAAAATATCGGGTTTTCGCTAATGTTACATATAAAATTGAAGTTTTAAGGTTAAAAATCAGCAGAAATTCATTTTTGGCACCCAAAAGTACCCAGATTTGCCTGAAAATCACTCAAATGAAATTCTAGAAATTTCTGAAAAATGCGAAAAAGAAGCGATTTTTATTGTTTTTTTTTCGGTCAATT</canonical>
            <polymorphic>AAAAAATTCAAAAAAAAACTTTTTTGAATTTTTTTTCAATTAAAAACCTATAATCTTTTATTTAGACGAATTTAAGATAAATTTCTATTGAATTAATTTTTCAAAAAAAACTTAAAAATTCAAATATTTGCAGGTCGCCCTCCGCATGTGCGCTCCACTGTACGAACGCCTTCGTAGATCAATTTCCTCCCGCTTGGCGTCAATTTCACACTCAAGTTCGAAGGATTTGAAGTCGTTAACGTTGAAAAATAATAATGGAGCGGCTAACAATAACAATAATAATAACAACGAAAACCCAGAAGAACAGCCATAGACATTTTTTTAAAAATCGGGTTGAATTATCTTTTTTTTAATTGAAACGGACCAATTTCGGTGCTTTTAATATTGAATAAATTTTTTTTTCTTTTTTTCTCTCATTTTCAGCGAAAATCGCTGGAATTTGGCGAAATTTCCGCTTTCAAAACTAAATTCAAACTTCCCTCTAGATTACGGTAGACAASAAAGTACCTTTACAACACACTCTACGCGCAATCTTTCTAATTCTCGTTCCAGCTTTGCTCTTGTGTTTTTCGGCCCAAAAATTTTGGTTTTTTGCAAATTTTTGGTGCAAAATTGAGTTTAAAGTCGATATTTGACTTAAATTCACTTTTTTCTTCCAATTTTCAGCAAAAATTTGCGGAAATTCGCTGAAATTTTTCTTTGGGTTACGGTAGACAGAAAAGTTCCCTCACAACAAACTTCACGCGCAATTACACACGTGGCTTTTTCTTGCTCATTTTTGTGTTTTAACCTAATTATTTTTGTGTTTTTGATCTAAAAATATCGGGTTTTCGCTAATGTTACATATAAAATTGAAGTTTTAAGGTTAAAAATCAGCAGAAATTCATTTTTGGCACCCAAAAGTACCCAGATTTGCCTGAAAATCACTCAAATGAAATTCTAGAAATTTCTGAAAAATGCGAAAAAGAAGCGATTTTTATTGTTTTTTTTTCGGTCAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAAATCGGGTTGAATTATCTT</pcr_primer_p1>
		<pcr_primer_p2>CGAAAAACACAAGAGCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAAAATCGGGTTGAATTATCTTTTTTTTAATTGAAACGGACCAATTTCGGTGCTTTTAATATTGAATAAATTTTTTTTTCTTTTTTTCTCTCATTTTCAGCGAAAATCGCTGGAATTTGGCGAAATTTCCGCTTTCAAAACTAAATTCAAACTTCCCTCTAGATTACGGTAGACAACAAAGTACCTTTACAACACACTCTACGCGCAATCTTTCTAATTCTCGTTCCAGCTTTGCTCTTGTGTTTTTCG</canonical_amplicon>
		<polymorphic_amplicon>TAAAAATCGGGTTGAATTATCTTTTTTTTAATTGAAACGGACCAATTTCGGTGCTTTTAATATTGAATAAATTTTTTTTTCTTTTTTTCTCTCATTTTCAGCGAAAATCGCTGGAATTTGGCGAAATTTCCGCTTTCAAAACTAAATTCAAACTTCCCTCTAGATTACGGTAGACAASAAAGTACCTTTACAACACACTCTACGCGCAATCTTTCTAATTCTCGTTCCAGCTTTGCTCTTGTGTTTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6300</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>143796</contig_pos>
        <strand>+</strand>
        <context>GAGAAATAGT[A/G]CGGGAAAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCCTGTTTCCTCTCGTAGAAACGGGAAATAGACGAGCAGAGAAATAGT</left_flank>
        <right_flank>CGGGAAAATGAGAGACGCAGCGAGAAAAGCAGGTTTTGACACACTTCCAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAAAAGTGGCTAAAAATGAAGAAATTTCGGTTTAAAATCTGAGAAAAATTGGCTGAAAAGGAACCCATTTTGGCTGAAAATCGGAGAAAATTTGACTGAAGATGAAGAAATTTCGGCTAAAAATTAGGAGAAAAATCGCCTCAAAATAAAGAAATTTTGGCTTGAAATTCGAGAAAAATTGGTTAAAAATAAAGAAAAATTGACTTAAAATCTGAGAAAATTTGACTGAAAATAAAGAAATTTCGGTTCAAAATCTGAGAAAAATTGGCTGAAAAGGAAGAAATTTTGGCTGAAAATTGGAGAAAAATTGGCTGAAAAACGAAGAAAAATTGGCTGAGAATGACTGAAAATATTTTGATCTACCCGAAAAAAACTTGAATTTCCGGCGCGAAATTTTTCATTTTTCGGTATTTTAAACTTCAAAAATGGGGAGTTTTCTTCTCCTTTTTCCCTGTTTCCTCTCGTAGAAACGGGAAATAGACGAGCAGAGAAATAGTACGGGAAAATGAGAGACGCAGCGAGAAAAGCAGGTTTTGACACACTTCCACACTTTAGATTTGAATTATTTTTCTAGTGAAAAATTTGGAAAAATTGAAATTCTATAAATTTTAATAGAAATTCTACTTTTTAATTAAAATATAAAAGACGATTTTTCGTTTTTTTTTTGTCTGAAAATCAGCAATTTTTCGTTCGCAAATTGATTTTTAAATCAATTTTTGTCTGAAAATCGTCTTTTTTCCCAAAAAAATCTTCGAAAAATGCATTTTTGTGTCATTTTTCAGCTATTTATCTCCCTTCAATTTTTCCTATATTTCTTCATTTTTCGCTCCGAATCCTCCTTTTCCCTCTATTTCAGTCTGAAATTTTCAGACCACGGAATCGTCGCCGTCCCCAAGAAGTCCAAAAACAACAACCTCAAAACGACCCTCTGGACTATCAGAAGGAGTTGGACGACGACGAAGTGCCTCCACTGACCACAATGGATCCAGCACCGCCGG</canonical>
            <polymorphic>AATAAAAGTGGCTAAAAATGAAGAAATTTCGGTTTAAAATCTGAGAAAAATTGGCTGAAAAGGAACCCATTTTGGCTGAAAATCGGAGAAAATTTGACTGAAGATGAAGAAATTTCGGCTAAAAATTAGGAGAAAAATCGCCTCAAAATAAAGAAATTTTGGCTTGAAATTCGAGAAAAATTGGTTAAAAATAAAGAAAAATTGACTTAAAATCTGAGAAAATTTGACTGAAAATAAAGAAATTTCGGTTCAAAATCTGAGAAAAATTGGCTGAAAAGGAAGAAATTTTGGCTGAAAATTGGAGAAAAATTGGCTGAAAAACGAAGAAAAATTGGCTGAGAATGACTGAAAATATTTTGATCTACCCGAAAAAAACTTGAATTTCCGGCGCGAAATTTTTCATTTTTCGGTATTTTAAACTTCAAAAATGGGGAGTTTTCTTCTCCTTTTTCCCTGTTTCCTCTCGTAGAAACGGGAAATAGACGAGCAGAGAAATAGTRCGGGAAAATGAGAGACGCAGCGAGAAAAGCAGGTTTTGACACACTTCCACACTTTAGATTTGAATTATTTTTCTAGTGAAAAATTTGGAAAAATTGAAATTCTATAAATTTTAATAGAAATTCTACTTTTTAATTAAAATATAAAAGACGATTTTTCGTTTTTTTTTTGTCTGAAAATCAGCAATTTTTCGTTCGCAAATTGATTTTTAAATCAATTTTTGTCTGAAAATCGTCTTTTTTCCCAAAAAAATCTTCGAAAAATGCATTTTTGTGTCATTTTTCAGCTATTTATCTCCCTTCAATTTTTCCTATATTTCTTCATTTTTCGCTCCGAATCCTCCTTTTCCCTCTATTTCAGTCTGAAATTTTCAGACCACGGAATCGTCGCCGTCCCCAAGAAGTCCAAAAACAACAACCTCAAAACGACCCTCTGGACTATCAGAAGGAGTTGGACGACGACGAAGTGCCTCCACTGACCACAATGGATCCAGCACCGCCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTTTCCCTGTTTCCTCTC</pcr_primer_p1>
		<pcr_primer_p2>GAAAAATTGCTGATTTTCAGAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTTTTTCCCTGTTTCCTCTCGTAGAAACGGGAAATAGACGAGCAGAGAAATAGTACGGGAAAATGAGAGACGCAGCGAGAAAAGCAGGTTTTGACACACTTCCACACTTTAGATTTGAATTATTTTTCTAGTGAAAAATTTGGAAAAATTGAAATTCTATAAATTTTAATAGAAATTCTACTTTTTAATTAAAATATAAAAGACGATTTTTCGTTTTTTTTTTGTCTGAAAATCAGCAATTTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTTTTTCCCTGTTTCCTCTCGTAGAAACGGGAAATAGACGAGCAGAGAAATAGTRCGGGAAAATGAGAGACGCAGCGAGAAAAGCAGGTTTTGACACACTTCCACACTTTAGATTTGAATTATTTTTCTAGTGAAAAATTTGGAAAAATTGAAATTCTATAAATTTTAATAGAAATTCTACTTTTTAATTAAAATATAAAAGACGATTTTTCGTTTTTTTTTTGTCTGAAAATCAGCAATTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6301</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>143762</contig_pos>
        <strand>+</strand>
        <context>GTTTCCTCTC[C/G]TAGAAACGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAAACTTCAAAAATGGGGAGTTTTCTTCTCCTTTTTCCCTGTTTCCTCTC</left_flank>
        <right_flank>TAGAAACGGGAAATAGACGAGCAGAGAAATAGTACGGGAAAATGAGAGAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGCCGCAACGTGCATTGGTTTCGGAGAAGAGTAATAAAAGTGGCTAAAAATGAAGAAATTTCGGTTTAAAATCTGAGAAAAATTGGCTGAAAAGGAACCCATTTTGGCTGAAAATCGGAGAAAATTTGACTGAAGATGAAGAAATTTCGGCTAAAAATTAGGAGAAAAATCGCCTCAAAATAAAGAAATTTTGGCTTGAAATTCGAGAAAAATTGGTTAAAAATAAAGAAAAATTGACTTAAAATCTGAGAAAATTTGACTGAAAATAAAGAAATTTCGGTTCAAAATCTGAGAAAAATTGGCTGAAAAGGAAGAAATTTTGGCTGAAAATTGGAGAAAAATTGGCTGAAAAACGAAGAAAAATTGGCTGAGAATGACTGAAAATATTTTGATCTACCCGAAAAAAACTTGAATTTCCGGCGCGAAATTTTTCATTTTTCGGTATTTTAAACTTCAAAAATGGGGAGTTTTCTTCTCCTTTTTCCCTGTTTCCTCTCGTAGAAACGGGAAATAGACGAGCAGAGAAATAGTACGGGAAAATGAGAGACGCAGCGAGAAAAGCAGGTTTTGACACACTTCCACACTTTAGATTTGAATTATTTTTCTAGTGAAAAATTTGGAAAAATTGAAATTCTATAAATTTTAATAGAAATTCTACTTTTTAATTAAAATATAAAAGACGATTTTTCGTTTTTTTTTTGTCTGAAAATCAGCAATTTTTCGTTCGCAAATTGATTTTTAAATCAATTTTTGTCTGAAAATCGTCTTTTTTCCCAAAAAAATCTTCGAAAAATGCATTTTTGTGTCATTTTTCAGCTATTTATCTCCCTTCAATTTTTCCTATATTTCTTCATTTTTCGCTCCGAATCCTCCTTTTCCCTCTATTTCAGTCTGAAATTTTCAGACCACGGAATCGTCGCCGTCCCCAAGAAGTCCAAAAACAACAACCTCAAAACGACCCTCTGGACTATCAGAAGGAGTTGGACGACGACGAAGTG</canonical>
            <polymorphic>TCGGCCGCAACGTGCATTGGTTTCGGAGAAGAGTAATAAAAGTGGCTAAAAATGAAGAAATTTCGGTTTAAAATCTGAGAAAAATTGGCTGAAAAGGAACCCATTTTGGCTGAAAATCGGAGAAAATTTGACTGAAGATGAAGAAATTTCGGCTAAAAATTAGGAGAAAAATCGCCTCAAAATAAAGAAATTTTGGCTTGAAATTCGAGAAAAATTGGTTAAAAATAAAGAAAAATTGACTTAAAATCTGAGAAAATTTGACTGAAAATAAAGAAATTTCGGTTCAAAATCTGAGAAAAATTGGCTGAAAAGGAAGAAATTTTGGCTGAAAATTGGAGAAAAATTGGCTGAAAAACGAAGAAAAATTGGCTGAGAATGACTGAAAATATTTTGATCTACCCGAAAAAAACTTGAATTTCCGGCGCGAAATTTTTCATTTTTCGGTATTTTAAACTTCAAAAATGGGGAGTTTTCTTCTCCTTTTTCCCTGTTTCCTCTCSTAGAAACGGGAAATAGACGAGCAGAGAAATAGTACGGGAAAATGAGAGACGCAGCGAGAAAAGCAGGTTTTGACACACTTCCACACTTTAGATTTGAATTATTTTTCTAGTGAAAAATTTGGAAAAATTGAAATTCTATAAATTTTAATAGAAATTCTACTTTTTAATTAAAATATAAAAGACGATTTTTCGTTTTTTTTTTGTCTGAAAATCAGCAATTTTTCGTTCGCAAATTGATTTTTAAATCAATTTTTGTCTGAAAATCGTCTTTTTTCCCAAAAAAATCTTCGAAAAATGCATTTTTGTGTCATTTTTCAGCTATTTATCTCCCTTCAATTTTTCCTATATTTCTTCATTTTTCGCTCCGAATCCTCCTTTTCCCTCTATTTCAGTCTGAAATTTTCAGACCACGGAATCGTCGCCGTCCCCAAGAAGTCCAAAAACAACAACCTCAAAACGACCCTCTGGACTATCAGAAGGAGTTGGACGACGACGAAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATTTTTCATTTTTCGGTATT</pcr_primer_p1>
		<pcr_primer_p2>CAATTTTTCCAAATTTTTCACTA</pcr_primer_p2>
		<pcr_amplicon_size>205</pcr_amplicon_size>
		<canonical_amplicon>GAAATTTTTCATTTTTCGGTATTTTAAACTTCAAAAATGGGGAGTTTTCTTCTCCTTTTTCCCTGTTTCCTCTCGTAGAAACGGGAAATAGACGAGCAGAGAAATAGTACGGGAAAATGAGAGACGCAGCGAGAAAAGCAGGTTTTGACACACTTCCACACTTTAGATTTGAATTATTTTTCTAGTGAAAAATTTGGAAAAATTG</canonical_amplicon>
		<polymorphic_amplicon>GAAATTTTTCATTTTTCGGTATTTTAAACTTCAAAAATGGGGAGTTTTCTTCTCCTTTTTCCCTGTTTCCTCTCSTAGAAACGGGAAATAGACGAGCAGAGAAATAGTACGGGAAAATGAGAGACGCAGCGAGAAAAGCAGGTTTTGACACACTTCCACACTTTAGATTTGAATTATTTTTCTAGTGAAAAATTTGGAAAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6302</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>143741</contig_pos>
        <strand>+</strand>
        <context>GTTTTCTTCT[C/T]CTTTTTCCCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTTCATTTTTCGGTATTTTAAACTTCAAAAATGGGGAGTTTTCTTCT</left_flank>
        <right_flank>CTTTTTCCCTGTTTCCTCTCGTAGAAACGGGAAATAGACGAGCAGAGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCCGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGGTTTCGGAGAAGAGTAATAAAAGTGGCTAAAAATGAAGAAATTTCGGTTTAAAATCTGAGAAAAATTGGCTGAAAAGGAACCCATTTTGGCTGAAAATCGGAGAAAATTTGACTGAAGATGAAGAAATTTCGGCTAAAAATTAGGAGAAAAATCGCCTCAAAATAAAGAAATTTTGGCTTGAAATTCGAGAAAAATTGGTTAAAAATAAAGAAAAATTGACTTAAAATCTGAGAAAATTTGACTGAAAATAAAGAAATTTCGGTTCAAAATCTGAGAAAAATTGGCTGAAAAGGAAGAAATTTTGGCTGAAAATTGGAGAAAAATTGGCTGAAAAACGAAGAAAAATTGGCTGAGAATGACTGAAAATATTTTGATCTACCCGAAAAAAACTTGAATTTCCGGCGCGAAATTTTTCATTTTTCGGTATTTTAAACTTCAAAAATGGGGAGTTTTCTTCTCCTTTTTCCCTGTTTCCTCTCGTAGAAACGGGAAATAGACGAGCAGAGAAATAGTACGGGAAAATGAGAGACGCAGCGAGAAAAGCAGGTTTTGACACACTTCCACACTTTAGATTTGAATTATTTTTCTAGTGAAAAATTTGGAAAAATTGAAATTCTATAAATTTTAATAGAAATTCTACTTTTTAATTAAAATATAAAAGACGATTTTTCGTTTTTTTTTTGTCTGAAAATCAGCAATTTTTCGTTCGCAAATTGATTTTTAAATCAATTTTTGTCTGAAAATCGTCTTTTTTCCCAAAAAAATCTTCGAAAAATGCATTTTTGTGTCATTTTTCAGCTATTTATCTCCCTTCAATTTTTCCTATATTTCTTCATTTTTCGCTCCGAATCCTCCTTTTCCCTCTATTTCAGTCTGAAATTTTCAGACCACGGAATCGTCGCCGTCCCCAAGAAGTCCAAAAACAACAACCTCAAAACGACCCTCTGGACTATCAGAAG</canonical>
            <polymorphic>GCTCCGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGGTTTCGGAGAAGAGTAATAAAAGTGGCTAAAAATGAAGAAATTTCGGTTTAAAATCTGAGAAAAATTGGCTGAAAAGGAACCCATTTTGGCTGAAAATCGGAGAAAATTTGACTGAAGATGAAGAAATTTCGGCTAAAAATTAGGAGAAAAATCGCCTCAAAATAAAGAAATTTTGGCTTGAAATTCGAGAAAAATTGGTTAAAAATAAAGAAAAATTGACTTAAAATCTGAGAAAATTTGACTGAAAATAAAGAAATTTCGGTTCAAAATCTGAGAAAAATTGGCTGAAAAGGAAGAAATTTTGGCTGAAAATTGGAGAAAAATTGGCTGAAAAACGAAGAAAAATTGGCTGAGAATGACTGAAAATATTTTGATCTACCCGAAAAAAACTTGAATTTCCGGCGCGAAATTTTTCATTTTTCGGTATTTTAAACTTCAAAAATGGGGAGTTTTCTTCTYCTTTTTCCCTGTTTCCTCTCGTAGAAACGGGAAATAGACGAGCAGAGAAATAGTACGGGAAAATGAGAGACGCAGCGAGAAAAGCAGGTTTTGACACACTTCCACACTTTAGATTTGAATTATTTTTCTAGTGAAAAATTTGGAAAAATTGAAATTCTATAAATTTTAATAGAAATTCTACTTTTTAATTAAAATATAAAAGACGATTTTTCGTTTTTTTTTTGTCTGAAAATCAGCAATTTTTCGTTCGCAAATTGATTTTTAAATCAATTTTTGTCTGAAAATCGTCTTTTTTCCCAAAAAAATCTTCGAAAAATGCATTTTTGTGTCATTTTTCAGCTATTTATCTCCCTTCAATTTTTCCTATATTTCTTCATTTTTCGCTCCGAATCCTCCTTTTCCCTCTATTTCAGTCTGAAATTTTCAGACCACGGAATCGTCGCCGTCCCCAAGAAGTCCAAAAACAACAACCTCAAAACGACCCTCTGGACTATCAGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATTTTTCATTTTTCGGTATT</pcr_primer_p1>
		<pcr_primer_p2>CAATTTTTCCAAATTTTTCACTA</pcr_primer_p2>
		<pcr_amplicon_size>205</pcr_amplicon_size>
		<canonical_amplicon>GAAATTTTTCATTTTTCGGTATTTTAAACTTCAAAAATGGGGAGTTTTCTTCTCCTTTTTCCCTGTTTCCTCTCGTAGAAACGGGAAATAGACGAGCAGAGAAATAGTACGGGAAAATGAGAGACGCAGCGAGAAAAGCAGGTTTTGACACACTTCCACACTTTAGATTTGAATTATTTTTCTAGTGAAAAATTTGGAAAAATTG</canonical_amplicon>
		<polymorphic_amplicon>GAAATTTTTCATTTTTCGGTATTTTAAACTTCAAAAATGGGGAGTTTTCTTCTYCTTTTTCCCTGTTTCCTCTCGTAGAAACGGGAAATAGACGAGCAGAGAAATAGTACGGGAAAATGAGAGACGCAGCGAGAAAAGCAGGTTTTGACACACTTCCACACTTTAGATTTGAATTATTTTTCTAGTGAAAAATTTGGAAAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6305</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>159510</contig_pos>
        <strand>+</strand>
        <context>AGCCCCCAAG[A/T]AGAGCAAAAa</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCCTCCTCCTCCTCTGACCATCATTTTGACCGGTTCAGAGCCCCCAAG</left_flank>
        <right_flank>AGAGCAAAAAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGGGTACACACAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATTTCTGAGGGGTTTTTCTTGAGTTTTTTCCAATTTTTCAGATTTTTTGGAACATTCAAAAAATTGAATTTTCGAGTTTTTCCGATTTTTGGAATTTTTAAGATTTTTTTGGAATTTACCGATTTTCAAAAAAAAATTGAATTTTCCGATTTTCGGGTTTTTATCCGAACCAGCCTGTTTGGCGCGCCTCCGGCGCTTCAAACGTCTGGCTGGTGCGCCTAGCGCGCTTTCCTTAGACCTTTTCAAAATTTGGGAGCCCTCGTTTTGCTGCTACCCTTTTGCACTTGCTCCCTGCATTTTTTGTCCCTGTCCTCTCCCAAAAGACGCGCTCCTCCAAAAAATTCCTTTGTCTTTTCTTCCTCACACTAGCAAACATTTTGTCTTACACATAGTGAGAGTGAGAGAGATATTGAGAAAAAAAATCGCGCGCGGCGGGCAAACACATTTTTCCTCCTCCTCCTCTGACCATCATTTTGACCGGTTCAGAGCCCCCAAGTAGAGCAAAAAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGGGTACACACAGACATTGATATGCCATCTCTTATCAGCGATTTCCGGGATGATAATCCTGGCGCATCAATACCGGTGCCGATGCACCCCTAGGGATTATCAAATAAAATATGAAATCCGGAAGTTTTTTTTTGTTGCTCCGCGCGAGTTTCATGATGTTGGATGGAATGTGTTGACTGATAAAACAAAGGAGTGGTGATATGGATTGTGTAGTTTGGACTAGAACATTTTGAACTCAATTATCTCGGTTTCTAGAAGAGATATGGAAATTTTGTGAACTGATAAAATGTTAGTGATATTATGATAAGCATTTCATCAGTTGACAACTTTTTGATAGCGGTCGACTGAGATAATGGATCTTGAAAATTTAAGCGTCGTTGAGTCGCTACTCGTCCGCTGGCGCCGGCTGCCAACCGATTGAGTACCCCTAATTGAGCTCAATTATCTCAATTCCTGTGAAAGA</canonical>
            <polymorphic>AGAATTTCTGAGGGGTTTTTCTTGAGTTTTTTCCAATTTTTCAGATTTTTTGGAACATTCAAAAAATTGAATTTTCGAGTTTTTCCGATTTTTGGAATTTTTAAGATTTTTTTGGAATTTACCGATTTTCAAAAAAAAATTGAATTTTCCGATTTTCGGGTTTTTATCCGAACCAGCCTGTTTGGCGCGCCTCCGGCGCTTCAAACGTCTGGCTGGTGCGCCTAGCGCGCTTTCCTTAGACCTTTTCAAAATTTGGGAGCCCTCGTTTTGCTGCTACCCTTTTGCACTTGCTCCCTGCATTTTTTGTCCCTGTCCTCTCCCAAAAGACGCGCTCCTCCAAAAAATTCCTTTGTCTTTTCTTCCTCACACTAGCAAACATTTTGTCTTACACATAGTGAGAGTGAGAGAGATATTGAGAAAAAAAATCGCGCGCGGCGGGCAAACACATTTTTCCTCCTCCTCCTCTGACCATCATTTTGACCGGTTCAGAGCCCCCAAGWAGAGCAAAAAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGGGTACACACAGACATTGATATGCCATCTCTTATCAGCGATTTCCGGGATGATAATCCTGGCGCATCAATACCGGTGCCGATGCACCCCTAGGGATTATCAAATAAAATATGAAATCCGGAAGTTTTTTTTTGTTGCTCCGCGCGAGTTTCATGATGTTGGATGGAATGTGTTGACTGATAAAACAAAGGAGTGGTGATATGGATTGTGTAGTTTGGACTAGAACATTTTGAACTCAATTATCTCGGTTTCTAGAAGAGATATGGAAATTTTGTGAACTGATAAAATGTTAGTGATATTATGATAAGCATTTCATCAGTTGACAACTTTTTGATAGCGGTCGACTGAGATAATGGATCTTGAAAATTTAAGCGTCGTTGAGTCGCTACTCGTCCGCTGGCGCCGGCTGCCAACCGATTGAGTACCCCTAATTGAGCTCAATTATCTCAATTCCTGTGAAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTCCTTTGTCTTTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>GAGATGGCATATCAATGTCTG</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTCCTTTGTCTTTTCTTCCTCACACTAGCAAACATTTTGTCTTACACATAGTGAGAGTGAGAGAGATATTGAGAAAAAAAATCGCGCGCGGCGGGCAAACACATTTTTCCTCCTCCTCCTCTGACCATCATTTTGACCGGTTCAGAGCCCCCAAGTAGAGCAAAAAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGGGTACACACAGACATTGATATGCCATCTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTCCTTTGTCTTTTCTTCCTCACACTAGCAAACATTTTGTCTTACACATAGTGAGAGTGAGAGAGATATTGAGAAAAAAAATCGCGCGCGGCGGGCAAACACATTTTTCCTCCTCCTCCTCTGACCATCATTTTGACCGGTTCAGAGCCCCCAAGWAGAGCAAAAAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGGGTACACACAGACATTGATATGCCATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6335</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>301458</contig_pos>
        <strand></strand>
        <context>TAGCACAAAA[C/A]CTACAAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAA</left_flank>
        <right_flank>CTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCCATTTTTCTTTTCTCGCCGCGAAATTCGACGAATGCTGTATTTTGTCGTCAAATCCAGTGCACTCGGTGTTTGCACAAAAACCAAGCTACCGTATCCCAAAAAATGTGTAAACCAATGGGGGAAAAAAGGTTTCAGGGGTAGTTTTGGCCGCGGAATTCGAATTTTTGGTTAGTTTTTAGATGGGAAATCCGAAAAAGGAAGAAATTTCAAATTTTTGAATCAAAAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTCGAAAGAGCTTCAAAATGAGTATACTCATCGCTATCTTTGGAAAAAAAATTTTTTTCAAAAAAAACTACAGTAACCCAAAAAAAATTTTTTTCTCTCAAACCTAGACA</canonical>
            <polymorphic>TGCCATTTTTCTTTTCTCGCCGCGAAATTCGACGAATGCTGTATTTTGTCGTCAAATCCAGTGCACTCGGTGTTTGCACAAAAACCAAGCTACCGTATCCCAAAAAATGTGTAAACCAATGGGGGAAAAAAGGTTTCAGGGGTAGTTTTGGCCGCGGAATTCGAATTTTTGGTTAGTTTTTAGATGGGAAATCCGAAAAAGGAAGAAATTTCAAATTTTTGAATCAAAAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAAMCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTCGAAAGAGCTTCAAAATGAGTATACTCATCGCTATCTTTGGAAAAAAAATTTTTTTCAAAAAAAACTACAGTAACCCAAAAAAAATTTTTTTCTCTCAAACCTAGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCCGAAAAAGGAAGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGTATTCTATGCTCAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>427</pcr_amplicon_size>
		<canonical_amplicon>AAATCCGAAAAAGGAAGAAATTTCAAATTTTTGAATCAAAAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAATCCGAAAAAGGAAGAAATTTCAAATTTTTGAATCAAAAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAAMCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6336</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>301299</contig_pos>
        <strand>+</strand>
        <context>TTGTGTTATC[G/T]GTTGATCAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATC</left_flank>
        <right_flank>GTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAACTCGAATTTAAACTTATTTCAACCGAAAAATCGGAATTTAGTTTTTAAATTTCGATTTGTATATTTTTCATGCATCGAATTTTACGACAAATTGCAGAAATTTCCTAAAAAATCAATTTTTCGCTCAATTCAGTTATAAAACCTCCGATTTTATGCCATTTTTCTTTTCTCGCCGCGAAATTCGACGAATGCTGTATTTTGTCGTCAAATCCAGTGCACTCGGTGTTTGCACAAAAACCAAGCTACCGTATCCCAAAAAATGTGTAAACCAATGGGGGAAAAAAGGTTTCAGGGGTAGTTTTGGCCGCGGAATTCGAATTTTTGGTTAGTTTTTAGATGGGAAATCCGAAAAAGGAAGAAATTTCAAATTTTTGAATCAAAAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAG</canonical>
            <polymorphic>GAAAAACTCGAATTTAAACTTATTTCAACCGAAAAATCGGAATTTAGTTTTTAAATTTCGATTTGTATATTTTTCATGCATCGAATTTTACGACAAATTGCAGAAATTTCCTAAAAAATCAATTTTTCGCTCAATTCAGTTATAAAACCTCCGATTTTATGCCATTTTTCTTTTCTCGCCGCGAAATTCGACGAATGCTGTATTTTGTCGTCAAATCCAGTGCACTCGGTGTTTGCACAAAAACCAAGCTACCGTATCCCAAAAAATGTGTAAACCAATGGGGGAAAAAAGGTTTCAGGGGTAGTTTTGGCCGCGGAATTCGAATTTTTGGTTAGTTTTTAGATGGGAAATCCGAAAAAGGAAGAAATTTCAAATTTTTGAATCAAAAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCKGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCCGAAAAAGGAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>TGATAACAAAAATTTGCTTGACT</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>AAATCCGAAAAAGGAAGAAATTTCAAATTTTTGAATCAAAAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCA</canonical_amplicon>
		<polymorphic_amplicon>AAATCCGAAAAAGGAAGAAATTTCAAATTTTTGAATCAAAAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCKGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6338</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>301610</contig_pos>
        <strand></strand>
        <context>AAGAMGMACM[T/C]MYAAATTGaw</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACC</left_flank>
        <right_flank>GAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCGGAATTCGAATTTTTGGTTAGTTTTTAGATGGGAAATCCGAAAAAGGAAGAAATTTCAAATTTTTGAATCAAAAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTCGAAAGAGCTTCAAAATGAGTATACTCATCGCTATCTTTGGAAAAAAAATTTTTTTCAAAAAAAACTACAGTAACCCAAAAAAAATTTTTTTCTCTCAAACCTAGACATGTTCATACTCATTTTGAAGCTCTGAACTTCCCAAATTCAAATTAGGCGCCTAAAACCCGCCTACCTCGATCGCCTGCAACAATATCAGCGAAACACTGCCAAACGTCTTTCGACATGCCCTTCGCGTCGCCACAAATGAAAATTTTCGCGT</canonical>
            <polymorphic>CGCGGAATTCGAATTTTTGGTTAGTTTTTAGATGGGAAATCCGAAAAAGGAAGAAATTTCAAATTTTTGAATCAAAAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCYGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTCGAAAGAGCTTCAAAATGAGTATACTCATCGCTATCTTTGGAAAAAAAATTTTTTTCAAAAAAAACTACAGTAACCCAAAAAAAATTTTTTTCTCTCAAACCTAGACATGTTCATACTCATTTTGAAGCTCTGAACTTCCCAAATTCAAATTAGGCGCCTAAAACCCGCCTACCTCGATCGCCTGCAACAATATCAGCGAAACACTGCCAAACGTCTTTCGACATGCCCTTCGCGTCGCCACAAATGAAAATTTTCGCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATTGAGCATAGAATACAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAAACGGATCAGTACATT</pcr_primer_p2>
		<pcr_amplicon_size>167</pcr_amplicon_size>
		<canonical_amplicon>CAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>CAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCYGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6339</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>301609</contig_pos>
        <strand></strand>
        <context>GAAGAMGMAC[C/A]YMYAAATTGa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAAC</left_flank>
        <right_flank>TGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGCGGAATTCGAATTTTTGGTTAGTTTTTAGATGGGAAATCCGAAAAAGGAAGAAATTTCAAATTTTTGAATCAAAAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTCGAAAGAGCTTCAAAATGAGTATACTCATCGCTATCTTTGGAAAAAAAATTTTTTTCAAAAAAAACTACAGTAACCCAAAAAAAATTTTTTTCTCTCAAACCTAGACATGTTCATACTCATTTTGAAGCTCTGAACTTCCCAAATTCAAATTAGGCGCCTAAAACCCGCCTACCTCGATCGCCTGCAACAATATCAGCGAAACACTGCCAAACGTCTTTCGACATGCCCTTCGCGTCGCCACAAATGAAAATTTTCGCG</canonical>
            <polymorphic>CCGCGGAATTCGAATTTTTGGTTAGTTTTTAGATGGGAAATCCGAAAAAGGAAGAAATTTCAAATTTTTGAATCAAAAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACMTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTCGAAAGAGCTTCAAAATGAGTATACTCATCGCTATCTTTGGAAAAAAAATTTTTTTCAAAAAAAACTACAGTAACCCAAAAAAAATTTTTTTCTCTCAAACCTAGACATGTTCATACTCATTTTGAAGCTCTGAACTTCCCAAATTCAAATTAGGCGCCTAAAACCCGCCTACCTCGATCGCCTGCAACAATATCAGCGAAACACTGCCAAACGTCTTTCGACATGCCCTTCGCGTCGCCACAAATGAAAATTTTCGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATTGAGCATAGAATACAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAAACGGATCAGTACATT</pcr_primer_p2>
		<pcr_amplicon_size>167</pcr_amplicon_size>
		<canonical_amplicon>CAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>CAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACMTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6340</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>301604</contig_pos>
        <strand></strand>
        <context>TAACAGAAGA[C/A]GMACMYMYAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGA</left_flank>
        <right_flank>GAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGCCGCGGAATTCGAATTTTTGGTTAGTTTTTAGATGGGAAATCCGAAAAAGGAAGAAATTTCAAATTTTTGAATCAAAAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTCGAAAGAGCTTCAAAATGAGTATACTCATCGCTATCTTTGGAAAAAAAATTTTTTTCAAAAAAAACTACAGTAACCCAAAAAAAATTTTTTTCTCTCAAACCTAGACATGTTCATACTCATTTTGAAGCTCTGAACTTCCCAAATTCAAATTAGGCGCCTAAAACCCGCCTACCTCGATCGCCTGCAACAATATCAGCGAAACACTGCCAAACGTCTTTCGACATGCCCTTCGCGTCGCCACAAATGAAAATTT</canonical>
            <polymorphic>TTTGGCCGCGGAATTCGAATTTTTGGTTAGTTTTTAGATGGGAAATCCGAAAAAGGAAGAAATTTCAAATTTTTGAATCAAAAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGAMGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTCGAAAGAGCTTCAAAATGAGTATACTCATCGCTATCTTTGGAAAAAAAATTTTTTTCAAAAAAAACTACAGTAACCCAAAAAAAATTTTTTTCTCTCAAACCTAGACATGTTCATACTCATTTTGAAGCTCTGAACTTCCCAAATTCAAATTAGGCGCCTAAAACCCGCCTACCTCGATCGCCTGCAACAATATCAGCGAAACACTGCCAAACGTCTTTCGACATGCCCTTCGCGTCGCCACAAATGAAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATTGAGCATAGAATACAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAAACGGATCAGTACATT</pcr_primer_p2>
		<pcr_amplicon_size>167</pcr_amplicon_size>
		<canonical_amplicon>CAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>CAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGAMGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6342</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>301724</contig_pos>
        <strand>+</strand>
        <context>TGAGATCYAT[C/T]AGCTTCTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCAT</left_flank>
        <right_flank>AGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTCGAAAGAGCTTCAAAATGAGTATACTCATCGCTATCTTTGGAAAAAAAATTTTTTTCAAAAAAAACTACAGTAACCCAAAAAAAATTTTTTTCTCTCAAACCTAGACATGTTCATACTCATTTTGAAGCTCTGAACTTCCCAAATTCAAATTAGGCGCCTAAAACCCGCCTACCTCGATCGCCTGCAACAATATCAGCGAAACACTGCCAAACGTCTTTCGACATGCCCTTCGCGTCGCCACAAATGAAAATTTTCGCGTTTTCCGACGGCTCGAGGAATGGCCGAACTTTTTCCAGGTGTTTTCTTAGGCCATCCTGTACTCGTTCGCCTTTCTGCTCACTCTCACAGACGATGAGGTCGCTGAGAATGCCTT</canonical>
            <polymorphic>CAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATYAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTCGAAAGAGCTTCAAAATGAGTATACTCATCGCTATCTTTGGAAAAAAAATTTTTTTCAAAAAAAACTACAGTAACCCAAAAAAAATTTTTTTCTCTCAAACCTAGACATGTTCATACTCATTTTGAAGCTCTGAACTTCCCAAATTCAAATTAGGCGCCTAAAACCCGCCTACCTCGATCGCCTGCAACAATATCAGCGAAACACTGCCAAACGTCTTTCGACATGCCCTTCGCGTCGCCACAAATGAAAATTTTCGCGTTTTCCGACGGCTCGAGGAATGGCCGAACTTTTTCCAGGTGTTTTCTTAGGCCATCCTGTACTCGTTCGCCTTTCTGCTCACTCTCACAGACGATGAGGTCGCTGAGAATGCCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCATAGAATACAAAAATGAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>GACGCTGGATCAGAATATCTA</pcr_primer_p2>
		<pcr_amplicon_size>294</pcr_amplicon_size>
		<canonical_amplicon>GCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTC</canonical_amplicon>
		<polymorphic_amplicon>GCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATYAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6343</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>301721</contig_pos>
        <strand>+</strand>
        <context>TCTTGAGATC[C/T]ATYAGCTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATC</left_flank>
        <right_flank>ATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTCGAAAGAGCTTCAAAATGAGTATACTCATCGCTATCTTTGGAAAAAAAATTTTTTTCAAAAAAAACTACAGTAACCCAAAAAAAATTTTTTTCTCTCAAACCTAGACATGTTCATACTCATTTTGAAGCTCTGAACTTCCCAAATTCAAATTAGGCGCCTAAAACCCGCCTACCTCGATCGCCTGCAACAATATCAGCGAAACACTGCCAAACGTCTTTCGACATGCCCTTCGCGTCGCCACAAATGAAAATTTTCGCGTTTTCCGACGGCTCGAGGAATGGCCGAACTTTTTCCAGGTGTTTTCTTAGGCCATCCTGTACTCGTTCGCCTTTCTGCTCACTCTCACAGACGATGAGGTCGCTGAGAATGC</canonical>
            <polymorphic>CCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCYATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTCGAAAGAGCTTCAAAATGAGTATACTCATCGCTATCTTTGGAAAAAAAATTTTTTTCAAAAAAAACTACAGTAACCCAAAAAAAATTTTTTTCTCTCAAACCTAGACATGTTCATACTCATTTTGAAGCTCTGAACTTCCCAAATTCAAATTAGGCGCCTAAAACCCGCCTACCTCGATCGCCTGCAACAATATCAGCGAAACACTGCCAAACGTCTTTCGACATGCCCTTCGCGTCGCCACAAATGAAAATTTTCGCGTTTTCCGACGGCTCGAGGAATGGCCGAACTTTTTCCAGGTGTTTTCTTAGGCCATCCTGTACTCGTTCGCCTTTCTGCTCACTCTCACAGACGATGAGGTCGCTGAGAATGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCATAGAATACAAAAATGAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>GACGCTGGATCAGAATATCTA</pcr_primer_p2>
		<pcr_amplicon_size>294</pcr_amplicon_size>
		<canonical_amplicon>GCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTC</canonical_amplicon>
		<polymorphic_amplicon>GCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCYATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6344</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>301685</contig_pos>
        <strand>+</strand>
        <context>attatCCCCA[A/G]ACATCCTCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCA</left_flank>
        <right_flank>ACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTCGAAAGAGCTTCAAAATGAGTATACTCATCGCTATCTTTGGAAAAAAAATTTTTTTCAAAAAAAACTACAGTAACCCAAAAAAAATTTTTTTCTCTCAAACCTAGACATGTTCATACTCATTTTGAAGCTCTGAACTTCCCAAATTCAAATTAGGCGCCTAAAACCCGCCTACCTCGATCGCCTGCAACAATATCAGCGAAACACTGCCAAACGTCTTTCGACATGCCCTTCGCGTCGCCACAAATGAAAATTTTCGCGTTTTCCGACGGCTCGAGGAATGGCCGAACTTTTTCCAGGTGTTTTCTTAGGCCATCCTGTACTCGTTCGCCTTTCT</canonical>
            <polymorphic>AAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCARACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTCGAAAGAGCTTCAAAATGAGTATACTCATCGCTATCTTTGGAAAAAAAATTTTTTTCAAAAAAAACTACAGTAACCCAAAAAAAATTTTTTTCTCTCAAACCTAGACATGTTCATACTCATTTTGAAGCTCTGAACTTCCCAAATTCAAATTAGGCGCCTAAAACCCGCCTACCTCGATCGCCTGCAACAATATCAGCGAAACACTGCCAAACGTCTTTCGACATGCCCTTCGCGTCGCCACAAATGAAAATTTTCGCGTTTTCCGACGGCTCGAGGAATGGCCGAACTTTTTCCAGGTGTTTTCTTAGGCCATCCTGTACTCGTTCGCCTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCATAGAATACAAAAATGAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>GACGCTGGATCAGAATATCTA</pcr_primer_p2>
		<pcr_amplicon_size>294</pcr_amplicon_size>
		<canonical_amplicon>GCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTC</canonical_amplicon>
		<polymorphic_amplicon>GCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCARACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6346</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>414160</contig_pos>
        <strand>+</strand>
        <context>TACTGTAGAT[C/T]ACTGTAGCGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAAATAGCGGACCAAAAGTTAAAAGGGCGTTTTTCGGATTACTGTAGAT</left_flank>
        <right_flank>ACTGTAGCGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATGCAAATACGCTCTATTGAGAATTTTCTCTATTCTATACTATTAGTTTCTATTTTTTTTCAAAAATTTCCTCGCTCACCGGGATCATACTGTACACGAACCAATTTTTGCATATTATTTGTTCCCCCATTTTTCCCGCCAAAAAATGTGAATTTTTGGCCCCGCCCCCCCGCCCCCACTTTTATAATCAATTTTTCTTTCGTTTTTTCGTCGTTTGCCGGATATGTGCAATAATTATTTTTGTCTCCCATTCTTCTGATGAGCAATCTATGCCCCGCCCCCCTCTCCCTATCATCATTTTTTCTCTGTCTGAAAATGAAGGAATTTTCTCAGATTTTTGGTTTTTTGAAAATTTTGAAAATGTAAAAAATTTTAAAAATTGGAAAAAAATTTTTTTTGGAAATTTTGATTTTTAGCATTTTTTGAAGAAAATAAGTTTAAATTGGCAAAATAGCGGACCAAAAGTTAAAAGGGCGTTTTTCGGATTACTGTAGATCACTGTAGCGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTAAATTTTCGCGGCGTTTCAGGGTTACTGTAGATTCAGAAATTTTTGGATTTCTAGGCTATTCCCTAGTTTTTTGAATTTCTAGGCCATGAGTTTTCTCAGATTTTTTTTTGGATTACTGTAGTTCAGGGTTACTGTAGCTTCTCAATTTTTTTTTGAGTTTCCCAACATTTGTGGATTACTGTAGCGTTTTCCATTTTCGATATTTTCGCGGCGTTTCAGGGTACTACTGCAGATTTAAAAAATTTGAGATTCCAGGATTACTGTAGAATGTTTTTTTTGTAGATTTTCAAAAAATTTTATTGAAAATGTTTGAAAAAGTCTAGACAATTCCAGAAAAAATTCACTTCCAAATTTCAGCCAACG</canonical>
            <polymorphic>AAAATGCAAATACGCTCTATTGAGAATTTTCTCTATTCTATACTATTAGTTTCTATTTTTTTTCAAAAATTTCCTCGCTCACCGGGATCATACTGTACACGAACCAATTTTTGCATATTATTTGTTCCCCCATTTTTCCCGCCAAAAAATGTGAATTTTTGGCCCCGCCCCCCCGCCCCCACTTTTATAATCAATTTTTCTTTCGTTTTTTCGTCGTTTGCCGGATATGTGCAATAATTATTTTTGTCTCCCATTCTTCTGATGAGCAATCTATGCCCCGCCCCCCTCTCCCTATCATCATTTTTTCTCTGTCTGAAAATGAAGGAATTTTCTCAGATTTTTGGTTTTTTGAAAATTTTGAAAATGTAAAAAATTTTAAAAATTGGAAAAAAATTTTTTTTGGAAATTTTGATTTTTAGCATTTTTTGAAGAAAATAAGTTTAAATTGGCAAAATAGCGGACCAAAAGTTAAAAGGGCGTTTTTCGGATTACTGTAGATYACTGTAGCGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTAAATTTTCGCGGCGTTTCAGGGTTACTGTAGATTCAGAAATTTTTGGATTTCTAGGCTATTCCCTAGTTTTTTGAATTTCTAGGCCATGAGTTTTCTCAGATTTTTTTTTGGATTACTGTAGTTCAGGGTTACTGTAGCTTCTCAATTTTTTTTTGAGTTTCCCAACATTTGTGGATTACTGTAGCGTTTTCCATTTTCGATATTTTCGCGGCGTTTCAGGGTACTACTGCAGATTTAAAAAATTTGAGATTCCAGGATTACTGTAGAATGTTTTTTTTGTAGATTTTCAAAAAATTTTATTGAAAATGTTTGAAAAAGTCTAGACAATTCCAGAAAAAATTCACTTCCAAATTTCAGCCAACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>504 411 85</canonical_bands>
                <polymorphic_bands>915 85</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>309 270 170 81 54 50 28 20 18</canonical_bands>
                <polymorphic_bands>579 170 81 54 50 28 20 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAGTTTAAATTGGCAAAATAGC</pcr_primer_p1>
		<pcr_primer_p2>CTGAATCTACAGTAACCCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TAAGTTTAAATTGGCAAAATAGCGGACCAAAAGTTAAAAGGGCGTTTTTCGGATTACTGTAGATCACTGTAGCGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTAAATTTTCGCGGCGTTTCAGGGTTACTGTAGATTCAG</canonical_amplicon>
		<polymorphic_amplicon>TAAGTTTAAATTGGCAAAATAGCGGACCAAAAGTTAAAAGGGCGTTTTTCGGATTACTGTAGATYACTGTAGCGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTAAATTTTCGCGGCGTTTCAGGGTTACTGTAGATTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6347</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>414088</contig_pos>
        <strand>+</strand>
        <context>AGCATTTTTT[A/G]AAGAAAATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAATTGGAAAAAAATTTTTTTTGGAAATTTTGATTTTTAGCATTTTTT</left_flank>
        <right_flank>AAGAAAATAAGTTTAAATTGGCAAAATAGCGGACCAAAAGTTAAAAGGGC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTCCCTTTTTCCGCTCCTCCTCCTCTTTTCGTTTCGGGACCCATCATCATCATCATTTTTTTTTGTAAAAAATGCAAATACGCTCTATTGAGAATTTTCTCTATTCTATACTATTAGTTTCTATTTTTTTTCAAAAATTTCCTCGCTCACCGGGATCATACTGTACACGAACCAATTTTTGCATATTATTTGTTCCCCCATTTTTCCCGCCAAAAAATGTGAATTTTTGGCCCCGCCCCCCCGCCCCCACTTTTATAATCAATTTTTCTTTCGTTTTTTCGTCGTTTGCCGGATATGTGCAATAATTATTTTTGTCTCCCATTCTTCTGATGAGCAATCTATGCCCCGCCCCCCTCTCCCTATCATCATTTTTTCTCTGTCTGAAAATGAAGGAATTTTCTCAGATTTTTGGTTTTTTGAAAATTTTGAAAATGTAAAAAATTTTAAAAATTGGAAAAAAATTTTTTTTGGAAATTTTGATTTTTAGCATTTTTTGAAGAAAATAAGTTTAAATTGGCAAAATAGCGGACCAAAAGTTAAAAGGGCGTTTTTCGGATTACTGTAGATCACTGTAGCGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTAAATTTTCGCGGCGTTTCAGGGTTACTGTAGATTCAGAAATTTTTGGATTTCTAGGCTATTCCCTAGTTTTTTGAATTTCTAGGCCATGAGTTTTCTCAGATTTTTTTTTGGATTACTGTAGTTCAGGGTTACTGTAGCTTCTCAATTTTTTTTTGAGTTTCCCAACATTTGTGGATTACTGTAGCGTTTTCCATTTTCGATATTTTCGCGGCGTTTCAGGGTACTACTGCAGATTTAAAAAATTTGAGATTCCAGGATTACTGTAGAATGTTTTTTTTGTAGATTTTCAAA</canonical>
            <polymorphic>ATTTTTCCCTTTTTCCGCTCCTCCTCCTCTTTTCGTTTCGGGACCCATCATCATCATCATTTTTTTTTGTAAAAAATGCAAATACGCTCTATTGAGAATTTTCTCTATTCTATACTATTAGTTTCTATTTTTTTTCAAAAATTTCCTCGCTCACCGGGATCATACTGTACACGAACCAATTTTTGCATATTATTTGTTCCCCCATTTTTCCCGCCAAAAAATGTGAATTTTTGGCCCCGCCCCCCCGCCCCCACTTTTATAATCAATTTTTCTTTCGTTTTTTCGTCGTTTGCCGGATATGTGCAATAATTATTTTTGTCTCCCATTCTTCTGATGAGCAATCTATGCCCCGCCCCCCTCTCCCTATCATCATTTTTTCTCTGTCTGAAAATGAAGGAATTTTCTCAGATTTTTGGTTTTTTGAAAATTTTGAAAATGTAAAAAATTTTAAAAATTGGAAAAAAATTTTTTTTGGAAATTTTGATTTTTAGCATTTTTTRAAGAAAATAAGTTTAAATTGGCAAAATAGCGGACCAAAAGTTAAAAGGGCGTTTTTCGGATTACTGTAGATCACTGTAGCGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTAAATTTTCGCGGCGTTTCAGGGTTACTGTAGATTCAGAAATTTTTGGATTTCTAGGCTATTCCCTAGTTTTTTGAATTTCTAGGCCATGAGTTTTCTCAGATTTTTTTTTGGATTACTGTAGTTCAGGGTTACTGTAGCTTCTCAATTTTTTTTTGAGTTTCCCAACATTTGTGGATTACTGTAGCGTTTTCCATTTTCGATATTTTCGCGGCGTTTCAGGGTACTACTGCAGATTTAAAAAATTTGAGATTCCAGGATTACTGTAGAATGTTTTTTTTGTAGATTTTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTATTTTTGTCTCCCATTCTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAAACGCCCTTTTAACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTATTTTTGTCTCCCATTCTTCTGATGAGCAATCTATGCCCCGCCCCCCTCTCCCTATCATCATTTTTTCTCTGTCTGAAAATGAAGGAATTTTCTCAGATTTTTGGTTTTTTGAAAATTTTGAAAATGTAAAAAATTTTAAAAATTGGAAAAAAATTTTTTTTGGAAATTTTGATTTTTAGCATTTTTTGAAGAAAATAAGTTTAAATTGGCAAAATAGCGGACCAAAAGTTAAAAGGGCGTTTTTC</canonical_amplicon>
		<polymorphic_amplicon>AATTATTTTTGTCTCCCATTCTTCTGATGAGCAATCTATGCCCCGCCCCCCTCTCCCTATCATCATTTTTTCTCTGTCTGAAAATGAAGGAATTTTCTCAGATTTTTGGTTTTTTGAAAATTTTGAAAATGTAAAAAATTTTAAAAATTGGAAAAAAATTTTTTTTGGAAATTTTGATTTTTAGCATTTTTTRAAGAAAATAAGTTTAAATTGGCAAAATAGCGGACCAAAAGTTAAAAGGGCGTTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6348</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>414292</contig_pos>
        <strand>+</strand>
        <context>CGTTTTCCAT[A/T]TTTTAAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCAT</left_flank>
        <right_flank>TTTTAAATTTTCGCGGCGTTTCAGGGTTACTGTAGATTCAGAAATTTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCCCGCCAAAAAATGTGAATTTTTGGCCCCGCCCCCCCGCCCCCACTTTTATAATCAATTTTTCTTTCGTTTTTTCGTCGTTTGCCGGATATGTGCAATAATTATTTTTGTCTCCCATTCTTCTGATGAGCAATCTATGCCCCGCCCCCCTCTCCCTATCATCATTTTTTCTCTGTCTGAAAATGAAGGAATTTTCTCAGATTTTTGGTTTTTTGAAAATTTTGAAAATGTAAAAAATTTTAAAAATTGGAAAAAAATTTTTTTTGGAAATTTTGATTTTTAGCATTTTTTGAAGAAAATAAGTTTAAATTGGCAAAATAGCGGACCAAAAGTTAAAAGGGCGTTTTTCGGATTACTGTAGATCACTGTAGCGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTAAATTTTCGCGGCGTTTCAGGGTTACTGTAGATTCAGAAATTTTTGGATTTCTAGGCTATTCCCTAGTTTTTTGAATTTCTAGGCCATGAGTTTTCTCAGATTTTTTTTTGGATTACTGTAGTTCAGGGTTACTGTAGCTTCTCAATTTTTTTTTGAGTTTCCCAACATTTGTGGATTACTGTAGCGTTTTCCATTTTCGATATTTTCGCGGCGTTTCAGGGTACTACTGCAGATTTAAAAAATTTGAGATTCCAGGATTACTGTAGAATGTTTTTTTTGTAGATTTTCAAAAAATTTTATTGAAAATGTTTGAAAAAGTCTAGACAATTCCAGAAAAAATTCACTTCCAAATTTCAGCCAACGAGTCAAAGTGGTGCTGTGTTTCTTCCTGAAAAATTTAAGTTTTTTTTGAAAAATTCGAAAAATCGGTGATGAAGATTTGAATTTTCGAAATTTCTAGAAATTTGTGGAATTATCGAATTTTCAGATGATTTG</canonical>
            <polymorphic>TTTTTCCCGCCAAAAAATGTGAATTTTTGGCCCCGCCCCCCCGCCCCCACTTTTATAATCAATTTTTCTTTCGTTTTTTCGTCGTTTGCCGGATATGTGCAATAATTATTTTTGTCTCCCATTCTTCTGATGAGCAATCTATGCCCCGCCCCCCTCTCCCTATCATCATTTTTTCTCTGTCTGAAAATGAAGGAATTTTCTCAGATTTTTGGTTTTTTGAAAATTTTGAAAATGTAAAAAATTTTAAAAATTGGAAAAAAATTTTTTTTGGAAATTTTGATTTTTAGCATTTTTTGAAGAAAATAAGTTTAAATTGGCAAAATAGCGGACCAAAAGTTAAAAGGGCGTTTTTCGGATTACTGTAGATCACTGTAGCGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATWTTTTAAATTTTCGCGGCGTTTCAGGGTTACTGTAGATTCAGAAATTTTTGGATTTCTAGGCTATTCCCTAGTTTTTTGAATTTCTAGGCCATGAGTTTTCTCAGATTTTTTTTTGGATTACTGTAGTTCAGGGTTACTGTAGCTTCTCAATTTTTTTTTGAGTTTCCCAACATTTGTGGATTACTGTAGCGTTTTCCATTTTCGATATTTTCGCGGCGTTTCAGGGTACTACTGCAGATTTAAAAAATTTGAGATTCCAGGATTACTGTAGAATGTTTTTTTTGTAGATTTTCAAAAAATTTTATTGAAAATGTTTGAAAAAGTCTAGACAATTCCAGAAAAAATTCACTTCCAAATTTCAGCCAACGAGTCAAAGTGGTGCTGTGTTTCTTCCTGAAAAATTTAAGTTTTTTTTGAAAAATTCGAAAAATCGGTGATGAAGATTTGAATTTTCGAAATTTCTAGAAATTTGTGGAATTATCGAATTTTCAGATGATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTTTCTAGTTTCTGGATTTT</pcr_primer_p1>
		<pcr_primer_p2>AGAAGCTACAGTAACCCTGAACT</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>CGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTAAATTTTCGCGGCGTTTCAGGGTTACTGTAGATTCAGAAATTTTTGGATTTCTAGGCTATTCCCTAGTTTTTTGAATTTCTAGGCCATGAGTTTTCTCAGATTTTTTTTTGGATTACTGTAGTTCAGGGTTACTGTAGCTTCT</canonical_amplicon>
		<polymorphic_amplicon>CGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATWTTTTAAATTTTCGCGGCGTTTCAGGGTTACTGTAGATTCAGAAATTTTTGGATTTCTAGGCTATTCCCTAGTTTTTTGAATTTCTAGGCCATGAGTTTTCTCAGATTTTTTTTTGGATTACTGTAGTTCAGGGTTACTGTAGCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6358</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>435947</contig_pos>
        <strand>+</strand>
        <context>CTGTTTTGAA[C/T]GTGTATCAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAGCTCAACAGGAACGTGTCAACCGCAATGCAGAAGCGCTGTTTTGAA</left_flank>
        <right_flank>GTGTATCAAAATAAGCTCGGCCGAGTTCTTCTCCGTTCCGATGCCACGTG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTAATCAAAACTTGGTTTTTTCCCAAACGGGGAATTTTTAGTTTTTCTGAAAATACATTTCATTTTCTACAAATTCGTTCAGAAGTCACTTCTCTAGCTATTCTAGAAGCCAAGATATACCTTTTTGAAGCTTTGAATAGACGCAGACAGTTAGAGTGTCTCGTTGTCTGCGTCTCTACCTTCTGAATTTACTCTAAATTTGTTACTCATAGCATTCTACACATTCCTGTCTAAATTTGAGGTTTCTGGCTATTCTAGGAGTCGAGATACGACCATATAAATTTTCGGAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAATCTTCAAATGGCTGTATCTGGGCTTCTTGAACTGCTAGAAATTTGATCTTTTTACACAATTAAAGGTTTTCATTATAATTTTCTGATTATTCAAAAACATTTTCAAATTTTCGATTTTCAGCTCAACAGGAACGTGTCAACCGCAATGCAGAAGCGCTGTTTTGAACGTGTATCAAAATAAGCTCGGCCGAGTTCTTCTCCGTTCCGATGCCACGTGTATTCCGGGACGAGACGAGTTGAGGACCTGTAATTTCCTGCCAGCCGAGTCTACAGTACACTGTAGTCTGGGAAAGCTGGCGTGTGAAGGAGATTTGCAGTGCAATTCGAAGTTCGGCGTTTTCATGAGCGAGTGTGAAGCTGATGCGGCAAGAGGTGAGAAGGAGGATTACTGTAGAATTTGGTGCTATTTGAAGCATCTGAAATGTTTGAGCTGCAATCTTTTTTCCAGGTGTTTGTTCGGAAAAATGCAAAACCCTTCTGAATCAGACAATCGAAACTTCCGTCGGAGCAATTTTCTCGAATTGCACATGCACCGCCCGTGACGATCAATTGTGCACTAATTTGAAGGATAACCTGTTGGGCGTTTGTTTGAAGGTACGGTAGTGATGGCCTAGAAAACTCAAAAATCAGCTTTCTAGGCCAATGAAATTTAAAAGGAATCAAACTA</canonical>
            <polymorphic>AATTTTAATCAAAACTTGGTTTTTTCCCAAACGGGGAATTTTTAGTTTTTCTGAAAATACATTTCATTTTCTACAAATTCGTTCAGAAGTCACTTCTCTAGCTATTCTAGAAGCCAAGATATACCTTTTTGAAGCTTTGAATAGACGCAGACAGTTAGAGTGTCTCGTTGTCTGCGTCTCTACCTTCTGAATTTACTCTAAATTTGTTACTCATAGCATTCTACACATTCCTGTCTAAATTTGAGGTTTCTGGCTATTCTAGGAGTCGAGATACGACCATATAAATTTTCGGAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAATCTTCAAATGGCTGTATCTGGGCTTCTTGAACTGCTAGAAATTTGATCTTTTTACACAATTAAAGGTTTTCATTATAATTTTCTGATTATTCAAAAACATTTTCAAATTTTCGATTTTCAGCTCAACAGGAACGTGTCAACCGCAATGCAGAAGCGCTGTTTTGAAYGTGTATCAAAATAAGCTCGGCCGAGTTCTTCTCCGTTCCGATGCCACGTGTATTCCGGGACGAGACGAGTTGAGGACCTGTAATTTCCTGCCAGCCGAGTCTACAGTACACTGTAGTCTGGGAAAGCTGGCGTGTGAAGGAGATTTGCAGTGCAATTCGAAGTTCGGCGTTTTCATGAGCGAGTGTGAAGCTGATGCGGCAAGAGGTGAGAAGGAGGATTACTGTAGAATTTGGTGCTATTTGAAGCATCTGAAATGTTTGAGCTGCAATCTTTTTTCCAGGTGTTTGTTCGGAAAAATGCAAAACCCTTCTGAATCAGACAATCGAAACTTCCGTCGGAGCAATTTTCTCGAATTGCACATGCACCGCCCGTGACGATCAATTGTGCACTAATTTGAAGGATAACCTGTTGGGCGTTTGTTTGAAGGTACGGTAGTGATGGCCTAGAAAACTCAAAAATCAGCTTTCTAGGCCAATGAAATTTAAAAGGAATCAAACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>465 454 47 34</canonical_bands>
                <polymorphic_bands>465 454 81</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>465 454 47 34</canonical_bands>
                <polymorphic_bands>465 454 81</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTTTCAAATTTTCGATTTTC</pcr_primer_p1>
		<pcr_primer_p2>ACTGCAAATCTCCTTCACAC</pcr_primer_p2>
		<pcr_amplicon_size>221</pcr_amplicon_size>
		<canonical_amplicon>CATTTTCAAATTTTCGATTTTCAGCTCAACAGGAACGTGTCAACCGCAATGCAGAAGCGCTGTTTTGAACGTGTATCAAAATAAGCTCGGCCGAGTTCTTCTCCGTTCCGATGCCACGTGTATTCCGGGACGAGACGAGTTGAGGACCTGTAATTTCCTGCCAGCCGAGTCTACAGTACACTGTAGTCTGGGAAAGCTGGCGTGTGAAGGAGATTTGCAGT</canonical_amplicon>
		<polymorphic_amplicon>CATTTTCAAATTTTCGATTTTCAGCTCAACAGGAACGTGTCAACCGCAATGCAGAAGCGCTGTTTTGAAYGTGTATCAAAATAAGCTCGGCCGAGTTCTTCTCCGTTCCGATGCCACGTGTATTCCGGGACGAGACGAGTTGAGGACCTGTAATTTCCTGCCAGCCGAGTCTACAGTACACTGTAGTCTGGGAAAGCTGGCGTGTGAAGGAGATTTGCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6384</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>461795</contig_pos>
        <strand></strand>
        <context>TCGGAATATT[T/C]TTTAARAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTAAATATCGGAAACTGAAAATTTCGAAACTTTTCGATTTTCGGAATATT</left_flank>
        <right_flank>TTTAAGAAATCAAGAAAAATTTTTTTTTCAAATTTTTAAAATTTCACCAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACCTGTTTTTTTCTCTCGACAATTTCCGTTTTACCTATTTTTGGGGGTAGGAGGGTCATGACGACCCCCCGTTGACACTTTTGTTCCTTTGTTTCCGAAATTTCTTGAAAATCTAGAGTAAAATTGATGAGTGTAGCAAAAACTACAGTAATCCGAAAAATTGGAATATTTCAAAAAAATCGAAACATTTCATGATCACTAAACCTATTTATCCTTTTTTTTTCAATTTCGAAAAATTCCAAACAATCTTGAAATAATTTAGAAGTTTCAACATTTCGAATTTTGAAACTTGAAAAAAAATGTAAAAAAATTTTTTGGGGTATTTTTAGTTTCCCAAAGTTTCAGTTTTTCTGGATTACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTAGCAAAAAGTACAGTAATCCAAAAATGCCATAAAATTAGAAAACCTAAATATCGGAAACTGAAAATTTCGAAACTTTTCGATTTTCGGAATATTTTTTAAGAAATCAAGAAAAATTTTTTTTTCAAATTTTTAAAATTTCACCAATTTCAAAAAAATCCTATAGTTCACACTCTGATTTTCTGACTGGATTACTGTGTCTTTTAAAAAAGGATTACTGTAGAAAAAGTTCTCCCAAGACCTCGAAAACTCAACTTTTTATTCCAAATCTCCAGGAAATTACATTTCCTCTCTCCAAATCTGTCAGTTGCTTTTTTTTTGGAAAAAGAACGTGTGAACATTCATTTAACGTCTTCTTCTTCTCCTTTTCCTTACTTTTTCTTCTAAATAGCAATTAAAAAAGATTTGCGCACTTGATATGTCCCCTCCTCCCCATCTATTCAAATAGGAGAATTGAACATATTTTGAATTTCGCGCCCAATTAATTTTCCGGATGATTTGAAGAATACATAGTAAAACTTCGCAGGAGGAGGTCAGATAATGGGATGGATGATCAGAATGCGCGAAAAAAAATACGGTTTTGGGGATTTAGAGATT</canonical>
            <polymorphic>GTACCTGTTTTTTTCTCTCGACAATTTCCGTTTTACCTATTTTTGGGGGTAGGAGGGTCATGACGACCCCCCGTTGACACTTTTGTTCCTTTGTTTCCGAAATTTCTTGAAAATCTAGAGTAAAATTGATGAGTGTAGCAAAAACTACAGTAATCCGAAAAATTGGAATATTTCAAAAAAATCGAAACATTTCATGATCACTAAACCTATTTATCCTTTTTTTTTCAATTTCGAAAAATTCCAAACAATCTTGAAATAATTTAGAAGTTTCAACATTTCGAATTTTGAAACTTGAAAAAAAATGTAAAAAAATTTTTTGGGGTATTTTTAGTTTCCCAAAGTTTCAGTTTTTCTGGATTACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTAGCAAAAAGTACAGTAATCCAAAAATGCCATAAAATTAGAAAACCTAAATATCGGAAACTGAAAATTTCGAAACTTTTCGATTTTCGGAATATTYTTTAAGAAATCAAGAAAAATTTTTTTTTCAAATTTTTAAAATTTCACCAATTTCAAAAAAATCCTATAGTTCACACTCTGATTTTCTGACTGGATTACTGTGTCTTTTAAAAAAGGATTACTGTAGAAAAAGTTCTCCCAAGACCTCGAAAACTCAACTTTTTATTCCAAATCTCCAGGAAATTACATTTCCTCTCTCCAAATCTGTCAGTTGCTTTTTTTTTGGAAAAAGAACGTGTGAACATTCATTTAACGTCTTCTTCTTCTCCTTTTCCTTACTTTTTCTTCTAAATAGCAATTAAAAAAGATTTGCGCACTTGATATGTCCCCTCCTCCCCATCTATTCAAATAGGAGAATTGAACATATTTTGAATTTCGCGCCCAATTAATTTTCCGGATGATTTGAAGAATACATAGTAAAACTTCGCAGGAGGAGGTCAGATAATGGGATGGATGATCAGAATGCGCGAAAAAAAATACGGTTTTGGGGATTTAGAGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAATGCCATAAAATTAGAAA</pcr_primer_p1>
		<pcr_primer_p2>AGATTTGGAATAAAAAGTTGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATGCCATAAAATTAGAAAACCTAAATATCGGAAACTGAAAATTTCGAAACTTTTCGATTTTCGGAATATTTTTTAAGAAATCAAGAAAAATTTTTTTTTCAAATTTTTAAAATTTCACCAATTTCAAAAAAATCCTATAGTTCACACTCTGATTTTCTGACTGGATTACTGTGTCTTTTAAAAAAGGATTACTGTAGAAAAAGTTCTCCCAAGACCTCGAAAACTCAACTTTTTATTCCAAATCT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAATGCCATAAAATTAGAAAACCTAAATATCGGAAACTGAAAATTTCGAAACTTTTCGATTTTCGGAATATTYTTTAAGAAATCAAGAAAAATTTTTTTTTCAAATTTTTAAAATTTCACCAATTTCAAAAAAATCCTATAGTTCACACTCTGATTTTCTGACTGGATTACTGTGTCTTTTAAAAAAGGATTACTGTAGAAAAAGTTCTCCCAAGACCTCGAAAACTCAACTTTTTATTCCAAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6385</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>461801</contig_pos>
        <strand>+</strand>
        <context>TATTYTTTAA[A/G]AAATCAAGaa</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCGGAAACTGAAAATTTCGAAACTTTTCGATTTTCGGAATATTTTTTAA</left_flank>
        <right_flank>AAATCAAGAAAAATTTTTTTTTCAAATTTTTAAAATTTCACCAATTTCAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTTTTCTCTCGACAATTTCCGTTTTACCTATTTTTGGGGGTAGGAGGGTCATGACGACCCCCCGTTGACACTTTTGTTCCTTTGTTTCCGAAATTTCTTGAAAATCTAGAGTAAAATTGATGAGTGTAGCAAAAACTACAGTAATCCGAAAAATTGGAATATTTCAAAAAAATCGAAACATTTCATGATCACTAAACCTATTTATCCTTTTTTTTTCAATTTCGAAAAATTCCAAACAATCTTGAAATAATTTAGAAGTTTCAACATTTCGAATTTTGAAACTTGAAAAAAAATGTAAAAAAATTTTTTGGGGTATTTTTAGTTTCCCAAAGTTTCAGTTTTTCTGGATTACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTAGCAAAAAGTACAGTAATCCAAAAATGCCATAAAATTAGAAAACCTAAATATCGGAAACTGAAAATTTCGAAACTTTTCGATTTTCGGAATATTTTTTAAGAAATCAAGAAAAATTTTTTTTTCAAATTTTTAAAATTTCACCAATTTCAAAAAAATCCTATAGTTCACACTCTGATTTTCTGACTGGATTACTGTGTCTTTTAAAAAAGGATTACTGTAGAAAAAGTTCTCCCAAGACCTCGAAAACTCAACTTTTTATTCCAAATCTCCAGGAAATTACATTTCCTCTCTCCAAATCTGTCAGTTGCTTTTTTTTTGGAAAAAGAACGTGTGAACATTCATTTAACGTCTTCTTCTTCTCCTTTTCCTTACTTTTTCTTCTAAATAGCAATTAAAAAAGATTTGCGCACTTGATATGTCCCCTCCTCCCCATCTATTCAAATAGGAGAATTGAACATATTTTGAATTTCGCGCCCAATTAATTTTCCGGATGATTTGAAGAATACATAGTAAAACTTCGCAGGAGGAGGTCAGATAATGGGATGGATGATCAGAATGCGCGAAAAAAAATACGGTTTTGGGGATTTAGAGATTACTGTA</canonical>
            <polymorphic>GTTTTTTTCTCTCGACAATTTCCGTTTTACCTATTTTTGGGGGTAGGAGGGTCATGACGACCCCCCGTTGACACTTTTGTTCCTTTGTTTCCGAAATTTCTTGAAAATCTAGAGTAAAATTGATGAGTGTAGCAAAAACTACAGTAATCCGAAAAATTGGAATATTTCAAAAAAATCGAAACATTTCATGATCACTAAACCTATTTATCCTTTTTTTTTCAATTTCGAAAAATTCCAAACAATCTTGAAATAATTTAGAAGTTTCAACATTTCGAATTTTGAAACTTGAAAAAAAATGTAAAAAAATTTTTTGGGGTATTTTTAGTTTCCCAAAGTTTCAGTTTTTCTGGATTACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTAGCAAAAAGTACAGTAATCCAAAAATGCCATAAAATTAGAAAACCTAAATATCGGAAACTGAAAATTTCGAAACTTTTCGATTTTCGGAATATTTTTTAARAAATCAAGAAAAATTTTTTTTTCAAATTTTTAAAATTTCACCAATTTCAAAAAAATCCTATAGTTCACACTCTGATTTTCTGACTGGATTACTGTGTCTTTTAAAAAAGGATTACTGTAGAAAAAGTTCTCCCAAGACCTCGAAAACTCAACTTTTTATTCCAAATCTCCAGGAAATTACATTTCCTCTCTCCAAATCTGTCAGTTGCTTTTTTTTTGGAAAAAGAACGTGTGAACATTCATTTAACGTCTTCTTCTTCTCCTTTTCCTTACTTTTTCTTCTAAATAGCAATTAAAAAAGATTTGCGCACTTGATATGTCCCCTCCTCCCCATCTATTCAAATAGGAGAATTGAACATATTTTGAATTTCGCGCCCAATTAATTTTCCGGATGATTTGAAGAATACATAGTAAAACTTCGCAGGAGGAGGTCAGATAATGGGATGGATGATCAGAATGCGCGAAAAAAAATACGGTTTTGGGGATTTAGAGATTACTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAATGCCATAAAATTAGAAA</pcr_primer_p1>
		<pcr_primer_p2>AGATTTGGAATAAAAAGTTGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATGCCATAAAATTAGAAAACCTAAATATCGGAAACTGAAAATTTCGAAACTTTTCGATTTTCGGAATATTTTTTAAGAAATCAAGAAAAATTTTTTTTTCAAATTTTTAAAATTTCACCAATTTCAAAAAAATCCTATAGTTCACACTCTGATTTTCTGACTGGATTACTGTGTCTTTTAAAAAAGGATTACTGTAGAAAAAGTTCTCCCAAGACCTCGAAAACTCAACTTTTTATTCCAAATCT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAATGCCATAAAATTAGAAAACCTAAATATCGGAAACTGAAAATTTCGAAACTTTTCGATTTTCGGAATATTTTTTAARAAATCAAGAAAAATTTTTTTTTCAAATTTTTAAAATTTCACCAATTTCAAAAAAATCCTATAGTTCACACTCTGATTTTCTGACTGGATTACTGTGTCTTTTAAAAAAGGATTACTGTAGAAAAAGTTCTCCCAAGACCTCGAAAACTCAACTTTTTATTCCAAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6390</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>461814</contig_pos>
        <strand></strand>
        <context>ATCAAGaaaa[A/T]tttttttttc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTCGAAACTTTTCGATTTTCGGAATATTTTTTAAGAAATCAAGAAAA</left_flank>
        <right_flank>TTTTTTTTTCAAATTTTTAAAATTTCACCAATTTCAAAAAAATCCTATAG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACAATTTCCGTTTTACCTATTTTTGGGGGTAGGAGGGTCATGACGACCCCCCGTTGACACTTTTGTTCCTTTGTTTCCGAAATTTCTTGAAAATCTAGAGTAAAATTGATGAGTGTAGCAAAAACTACAGTAATCCGAAAAATTGGAATATTTCAAAAAAATCGAAACATTTCATGATCACTAAACCTATTTATCCTTTTTTTTTCAATTTCGAAAAATTCCAAACAATCTTGAAATAATTTAGAAGTTTCAACATTTCGAATTTTGAAACTTGAAAAAAAATGTAAAAAAATTTTTTGGGGTATTTTTAGTTTCCCAAAGTTTCAGTTTTTCTGGATTACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTAGCAAAAAGTACAGTAATCCAAAAATGCCATAAAATTAGAAAACCTAAATATCGGAAACTGAAAATTTCGAAACTTTTCGATTTTCGGAATATTTTTTAAGAAATCAAGAAAAATTTTTTTTTCAAATTTTTAAAATTTCACCAATTTCAAAAAAATCCTATAGTTCACACTCTGATTTTCTGACTGGATTACTGTGTCTTTTAAAAAAGGATTACTGTAGAAAAAGTTCTCCCAAGACCTCGAAAACTCAACTTTTTATTCCAAATCTCCAGGAAATTACATTTCCTCTCTCCAAATCTGTCAGTTGCTTTTTTTTTGGAAAAAGAACGTGTGAACATTCATTTAACGTCTTCTTCTTCTCCTTTTCCTTACTTTTTCTTCTAAATAGCAATTAAAAAAGATTTGCGCACTTGATATGTCCCCTCCTCCCCATCTATTCAAATAGGAGAATTGAACATATTTTGAATTTCGCGCCCAATTAATTTTCCGGATGATTTGAAGAATACATAGTAAAACTTCGCAGGAGGAGGTCAGATAATGGGATGGATGATCAGAATGCGCGAAAAAAAATACGGTTTTGGGGATTTAGAGATTACTGTAGAAGAATATGGGC</canonical>
            <polymorphic>GACAATTTCCGTTTTACCTATTTTTGGGGGTAGGAGGGTCATGACGACCCCCCGTTGACACTTTTGTTCCTTTGTTTCCGAAATTTCTTGAAAATCTAGAGTAAAATTGATGAGTGTAGCAAAAACTACAGTAATCCGAAAAATTGGAATATTTCAAAAAAATCGAAACATTTCATGATCACTAAACCTATTTATCCTTTTTTTTTCAATTTCGAAAAATTCCAAACAATCTTGAAATAATTTAGAAGTTTCAACATTTCGAATTTTGAAACTTGAAAAAAAATGTAAAAAAATTTTTTGGGGTATTTTTAGTTTCCCAAAGTTTCAGTTTTTCTGGATTACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTAGCAAAAAGTACAGTAATCCAAAAATGCCATAAAATTAGAAAACCTAAATATCGGAAACTGAAAATTTCGAAACTTTTCGATTTTCGGAATATTTTTTAAGAAATCAAGAAAAWTTTTTTTTTCAAATTTTTAAAATTTCACCAATTTCAAAAAAATCCTATAGTTCACACTCTGATTTTCTGACTGGATTACTGTGTCTTTTAAAAAAGGATTACTGTAGAAAAAGTTCTCCCAAGACCTCGAAAACTCAACTTTTTATTCCAAATCTCCAGGAAATTACATTTCCTCTCTCCAAATCTGTCAGTTGCTTTTTTTTTGGAAAAAGAACGTGTGAACATTCATTTAACGTCTTCTTCTTCTCCTTTTCCTTACTTTTTCTTCTAAATAGCAATTAAAAAAGATTTGCGCACTTGATATGTCCCCTCCTCCCCATCTATTCAAATAGGAGAATTGAACATATTTTGAATTTCGCGCCCAATTAATTTTCCGGATGATTTGAAGAATACATAGTAAAACTTCGCAGGAGGAGGTCAGATAATGGGATGGATGATCAGAATGCGCGAAAAAAAATACGGTTTTGGGGATTTAGAGATTACTGTAGAAGAATATGGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>331 158 149 136 81 49 44 30 13 9</canonical_bands>
                <polymorphic_bands>331 158 149 136 81 62 44 30 9</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>133 132 128 115 78 66 59 49 37 30 30 23 23 21 16 13 12 10 9 9 4 3</canonical_bands>
                <polymorphic_bands>133 132 128 115 78 66 62 59 37 30 30 23 23 21 16 12 10 9 9 4 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAATGCCATAAAATTAGAAA</pcr_primer_p1>
		<pcr_primer_p2>AGATTTGGAATAAAAAGTTGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATGCCATAAAATTAGAAAACCTAAATATCGGAAACTGAAAATTTCGAAACTTTTCGATTTTCGGAATATTTTTTAAGAAATCAAGAAAAATTTTTTTTTCAAATTTTTAAAATTTCACCAATTTCAAAAAAATCCTATAGTTCACACTCTGATTTTCTGACTGGATTACTGTGTCTTTTAAAAAAGGATTACTGTAGAAAAAGTTCTCCCAAGACCTCGAAAACTCAACTTTTTATTCCAAATCT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAATGCCATAAAATTAGAAAACCTAAATATCGGAAACTGAAAATTTCGAAACTTTTCGATTTTCGGAATATTTTTTAAGAAATCAAGAAAAWTTTTTTTTTCAAATTTTTAAAATTTCACCAATTTCAAAAAAATCCTATAGTTCACACTCTGATTTTCTGACTGGATTACTGTGTCTTTTAAAAAAGGATTACTGTAGAAAAAGTTCTCCCAAGACCTCGAAAACTCAACTTTTTATTCCAAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6416</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>461926</contig_pos>
        <strand>+</strand>
        <context>CTGTAGAAAA[A/C]GTTCTCCCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTTCTGACTGGATTACTGTGTCTTTTAAAAAAGGATTACTGTAGAAAA</left_flank>
        <right_flank>GTTCTCCCAAGACCTCGAAAACTCAACTTTTTATTCCAAATCTCCAGGAA</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGTAGCAAAAACTACAGTAATCCGAAAAATTGGAATATTTCAAAAAAATCGAAACATTTCATGATCACTAAACCTATTTATCCTTTTTTTTTCAATTTCGAAAAATTCCAAACAATCTTGAAATAATTTAGAAGTTTCAACATTTCGAATTTTGAAACTTGAAAAAAAATGTAAAAAAATTTTTTGGGGTATTTTTAGTTTCCCAAAGTTTCAGTTTTTCTGGATTACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTAGCAAAAAGTACAGTAATCCAAAAATGCCATAAAATTAGAAAACCTAAATATCGGAAACTGAAAATTTCGAAACTTTTCGATTTTCGGAATATTTTTTAAGAAATCAAGAAAAATTTTTTTTTCAAATTTTTAAAATTTCACCAATTTCAAAAAAATCCTATAGTTCACACTCTGATTTTCTGACTGGATTACTGTGTCTTTTAAAAAAGGATTACTGTAGAAAAAGTTCTCCCAAGACCTCGAAAACTCAACTTTTTATTCCAAATCTCCAGGAAATTACATTTCCTCTCTCCAAATCTGTCAGTTGCTTTTTTTTTGGAAAAAGAACGTGTGAACATTCATTTAACGTCTTCTTCTTCTCCTTTTCCTTACTTTTTCTTCTAAATAGCAATTAAAAAAGATTTGCGCACTTGATATGTCCCCTCCTCCCCATCTATTCAAATAGGAGAATTGAACATATTTTGAATTTCGCGCCCAATTAATTTTCCGGATGATTTGAAGAATACATAGTAAAACTTCGCAGGAGGAGGTCAGATAATGGGATGGATGATCAGAATGCGCGAAAAAAAATACGGTTTTGGGGATTTAGAGATTACTGTAGAAGAATATGGGCATTTGGAATAGAGCCAGCCATCTTGGGTTACTGTGACTAAATTGATTAGGTGTAACTATCCATTAGGCGTGGTGGGATTGGATTACTGTAGTTTCCAACAGATAAGGGATTA</canonical>
            <polymorphic>AGTGTAGCAAAAACTACAGTAATCCGAAAAATTGGAATATTTCAAAAAAATCGAAACATTTCATGATCACTAAACCTATTTATCCTTTTTTTTTCAATTTCGAAAAATTCCAAACAATCTTGAAATAATTTAGAAGTTTCAACATTTCGAATTTTGAAACTTGAAAAAAAATGTAAAAAAATTTTTTGGGGTATTTTTAGTTTCCCAAAGTTTCAGTTTTTCTGGATTACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTAGCAAAAAGTACAGTAATCCAAAAATGCCATAAAATTAGAAAACCTAAATATCGGAAACTGAAAATTTCGAAACTTTTCGATTTTCGGAATATTTTTTAAGAAATCAAGAAAAATTTTTTTTTCAAATTTTTAAAATTTCACCAATTTCAAAAAAATCCTATAGTTCACACTCTGATTTTCTGACTGGATTACTGTGTCTTTTAAAAAAGGATTACTGTAGAAAAMGTTCTCCCAAGACCTCGAAAACTCAACTTTTTATTCCAAATCTCCAGGAAATTACATTTCCTCTCTCCAAATCTGTCAGTTGCTTTTTTTTTGGAAAAAGAACGTGTGAACATTCATTTAACGTCTTCTTCTTCTCCTTTTCCTTACTTTTTCTTCTAAATAGCAATTAAAAAAGATTTGCGCACTTGATATGTCCCCTCCTCCCCATCTATTCAAATAGGAGAATTGAACATATTTTGAATTTCGCGCCCAATTAATTTTCCGGATGATTTGAAGAATACATAGTAAAACTTCGCAGGAGGAGGTCAGATAATGGGATGGATGATCAGAATGCGCGAAAAAAAATACGGTTTTGGGGATTTAGAGATTACTGTAGAAGAATATGGGCATTTGGAATAGAGCCAGCCATCTTGGGTTACTGTGACTAAATTGATTAGGTGTAACTATCCATTAGGCGTGGTGGGATTGGATTACTGTAGTTTCCAACAGATAAGGGATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTCACACTCTGATTTTCTGAC</pcr_primer_p1>
		<pcr_primer_p2>ATATCAAGTGCGCAAATCTT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AGTTCACACTCTGATTTTCTGACTGGATTACTGTGTCTTTTAAAAAAGGATTACTGTAGAAAAAGTTCTCCCAAGACCTCGAAAACTCAACTTTTTATTCCAAATCTCCAGGAAATTACATTTCCTCTCTCCAAATCTGTCAGTTGCTTTTTTTTTGGAAAAAGAACGTGTGAACATTCATTTAACGTCTTCTTCTTCTCCTTTTCCTTACTTTTTCTTCTAAATAGCAATTAAAAAAGATTTGCGCACTTGATAT</canonical_amplicon>
		<polymorphic_amplicon>AGTTCACACTCTGATTTTCTGACTGGATTACTGTGTCTTTTAAAAAAGGATTACTGTAGAAAAMGTTCTCCCAAGACCTCGAAAACTCAACTTTTTATTCCAAATCTCCAGGAAATTACATTTCCTCTCTCCAAATCTGTCAGTTGCTTTTTTTTTGGAAAAAGAACGTGTGAACATTCATTTAACGTCTTCTTCTTCTCCTTTTCCTTACTTTTTCTTCTAAATAGCAATTAAAAAAGATTTGCGCACTTGATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6417</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>466354</contig_pos>
        <strand>+</strand>
        <context>TATAYGCTCA[A/C]aagattktct</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTCATAGGAACCGAGATAATTGAGCGCAAAGTGTACGAGCTATACGCTCA</left_flank>
        <right_flank>AAGATTTTCTACATTTCTGTCCAGTCTTCAATTTTCTAGCTCTTCTGGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGCGGTTTTTTGGCAAAGTAGAAAGTTAAAAACTGTGATAGGTTCCCATAAATCAATTTGATTTAGAAGCCCCTAGGGGAGCTAGAACTCCAAATCCAATCAATTTCAGAAGAACCTCAAGACCTGTTATGGTATACAGCCTGAGCTACACGGTTGCCTGCTTTTCTTTCCCTGCAACTTGGCCCATAGGCGAGATACAGCGTTTCAAGTTTTGTCATTTTGTAGCTCTTGAATTTTCCCATCAGACTCATTCGATTTGTTCCAAACATAATAAGTCGGAAAAAACTTATGGGCGTGTTTGTAAATTTTAACGGAAGCCCATCTTATGTGTACACTTTGAGCTCAATTATCTCGGTTCCTAATTAAGATATCAAATATCTGTCAACTGATAAAGTATTAGTGATATTATGATAATTAATTTTACCTGGCAAAACTTATTTGACATCTCTCATAGGAACCGAGATAATTGAGCGCAAAGTGTACGAGCTATACGCTCACAAGATTTTCTACATTTCTGTCCAGTCTTCAATTTTCTAGCTCTTCTGGAAGCCAAGATACATACGTTTGAAGTTTCTAGCGGAAGTTTCAAACTTCTAAAACTACCTCCAACTTTTTCTTGAGTATTTTTGTCCCCCAAAAGTCTGCAAGATTTCAAAACCACCAACTTCCTCCGATTTTTTTTCAGACGACTGCAGTAAATCATCATCGGATGACGAGGACACGAACGACACGTCATCTGCCTCCTCCTCATCGGCCCGCCGAAATCGTACATCATTCTCCGCCGAACAACTTGACGTACTTGAGACATCCTTTCGAGCATCCACCTATCCAGACGCTCAAGCCAAAGAGCACATCGCCAAGGAGACAGGGCTATCGGAGGAAAAAATTATGACATGGTTCTCTAATAGAAGGGCACGGTGCCGAAAGAATATGCCCATTTATCATCAGTACAATACCGCGCACGGGTTTAATGGACCACAGGTGAGCTAATTTTATAA</canonical>
            <polymorphic>TTCGCGGTTTTTTGGCAAAGTAGAAAGTTAAAAACTGTGATAGGTTCCCATAAATCAATTTGATTTAGAAGCCCCTAGGGGAGCTAGAACTCCAAATCCAATCAATTTCAGAAGAACCTCAAGACCTGTTATGGTATACAGCCTGAGCTACACGGTTGCCTGCTTTTCTTTCCCTGCAACTTGGCCCATAGGCGAGATACAGCGTTTCAAGTTTTGTCATTTTGTAGCTCTTGAATTTTCCCATCAGACTCATTCGATTTGTTCCAAACATAATAAGTCGGAAAAAACTTATGGGCGTGTTTGTAAATTTTAACGGAAGCCCATCTTATGTGTACACTTTGAGCTCAATTATCTCGGTTCCTAATTAAGATATCAAATATCTGTCAACTGATAAAGTATTAGTGATATTATGATAATTAATTTTACCTGGCAAAACTTATTTGACATCTCTCATAGGAACCGAGATAATTGAGCGCAAAGTGTACGAGCTATACGCTCAMAAGATTTTCTACATTTCTGTCCAGTCTTCAATTTTCTAGCTCTTCTGGAAGCCAAGATACATACGTTTGAAGTTTCTAGCGGAAGTTTCAAACTTCTAAAACTACCTCCAACTTTTTCTTGAGTATTTTTGTCCCCCAAAAGTCTGCAAGATTTCAAAACCACCAACTTCCTCCGATTTTTTTTCAGACGACTGCAGTAAATCATCATCGGATGACGAGGACACGAACGACACGTCATCTGCCTCCTCCTCATCGGCCCGCCGAAATCGTACATCATTCTCCGCCGAACAACTTGACGTACTTGAGACATCCTTTCGAGCATCCACCTATCCAGACGCTCAAGCCAAAGAGCACATCGCCAAGGAGACAGGGCTATCGGAGGAAAAAATTATGACATGGTTCTCTAATAGAAGGGCACGGTGCCGAAAGAATATGCCCATTTATCATCAGTACAATACCGCGCACGGGTTTAATGGACCACAGGTGAGCTAATTTTATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>163 147 113 93 78 68 64 61 42 39 33 28 17 16 14 9 6 5 4</canonical_bands>
                <polymorphic_bands>180 147 113 93 78 68 64 61 42 39 33 28 16 14 9 6 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATGGTATACAGCCTGAGCTAC</pcr_primer_p1>
		<pcr_primer_p2>TGGAGGTAGTTTTAGAAGTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>482</pcr_amplicon_size>
		<canonical_amplicon>TTATGGTATACAGCCTGAGCTACACGGTTGCCTGCTTTTCTTTCCCTGCAACTTGGCCCATAGGCGAGATACAGCGTTTCAAGTTTTGTCATTTTGTAGCTCTTGAATTTTCCCATCAGACTCATTCGATTTGTTCCAAACATAATAAGTCGGAAAAAACTTATGGGCGTGTTTGTAAATTTTAACGGAAGCCCATCTTATGTGTACACTTTGAGCTCAATTATCTCGGTTCCTAATTAAGATATCAAATATCTGTCAACTGATAAAGTATTAGTGATATTATGATAATTAATTTTACCTGGCAAAACTTATTTGACATCTCTCATAGGAACCGAGATAATTGAGCGCAAAGTGTACGAGCTATACGCTCACAAGATTTTCTACATTTCTGTCCAGTCTTCAATTTTCTAGCTCTTCTGGAAGCCAAGATACATACGTTTGAAGTTTCTAGCGGAAGTTTCAAACTTCTAAAACTACCTCCA</canonical_amplicon>
		<polymorphic_amplicon>TTATGGTATACAGCCTGAGCTACACGGTTGCCTGCTTTTCTTTCCCTGCAACTTGGCCCATAGGCGAGATACAGCGTTTCAAGTTTTGTCATTTTGTAGCTCTTGAATTTTCCCATCAGACTCATTCGATTTGTTCCAAACATAATAAGTCGGAAAAAACTTATGGGCGTGTTTGTAAATTTTAACGGAAGCCCATCTTATGTGTACACTTTGAGCTCAATTATCTCGGTTCCTAATTAAGATATCAAATATCTGTCAACTGATAAAGTATTAGTGATATTATGATAATTAATTTTACCTGGCAAAACTTATTTGACATCTCTCATAGGAACCGAGATAATTGAGCGCAAAGTGTACGAGCTATACGCTCAMAAGATTTTCTACATTTCTGTCCAGTCTTCAATTTTCTAGCTCTTCTGGAAGCCAAGATACATACGTTTGAAGTTTCTAGCGGAAGTTTCAAACTTCTAAAACTACCTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6418</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>466348</contig_pos>
        <strand></strand>
        <context>ACGAGCTATA[C/T]GCTCAMaaga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACATCTCTCATAGGAACCGAGATAATTGAGCGCAAAGTGTACGAGCTATA</left_flank>
        <right_flank>GCTCACAAGATTTTCTACATTTCTGTCCAGTCTTCAATTTTCTAGCTCTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGACTTCGCGGTTTTTTGGCAAAGTAGAAAGTTAAAAACTGTGATAGGTTCCCATAAATCAATTTGATTTAGAAGCCCCTAGGGGAGCTAGAACTCCAAATCCAATCAATTTCAGAAGAACCTCAAGACCTGTTATGGTATACAGCCTGAGCTACACGGTTGCCTGCTTTTCTTTCCCTGCAACTTGGCCCATAGGCGAGATACAGCGTTTCAAGTTTTGTCATTTTGTAGCTCTTGAATTTTCCCATCAGACTCATTCGATTTGTTCCAAACATAATAAGTCGGAAAAAACTTATGGGCGTGTTTGTAAATTTTAACGGAAGCCCATCTTATGTGTACACTTTGAGCTCAATTATCTCGGTTCCTAATTAAGATATCAAATATCTGTCAACTGATAAAGTATTAGTGATATTATGATAATTAATTTTACCTGGCAAAACTTATTTGACATCTCTCATAGGAACCGAGATAATTGAGCGCAAAGTGTACGAGCTATACGCTCACAAGATTTTCTACATTTCTGTCCAGTCTTCAATTTTCTAGCTCTTCTGGAAGCCAAGATACATACGTTTGAAGTTTCTAGCGGAAGTTTCAAACTTCTAAAACTACCTCCAACTTTTTCTTGAGTATTTTTGTCCCCCAAAAGTCTGCAAGATTTCAAAACCACCAACTTCCTCCGATTTTTTTTCAGACGACTGCAGTAAATCATCATCGGATGACGAGGACACGAACGACACGTCATCTGCCTCCTCCTCATCGGCCCGCCGAAATCGTACATCATTCTCCGCCGAACAACTTGACGTACTTGAGACATCCTTTCGAGCATCCACCTATCCAGACGCTCAAGCCAAAGAGCACATCGCCAAGGAGACAGGGCTATCGGAGGAAAAAATTATGACATGGTTCTCTAATAGAAGGGCACGGTGCCGAAAGAATATGCCCATTTATCATCAGTACAATACCGCGCACGGGTTTAATGGACCACAGGTGAGCTAATT</canonical>
            <polymorphic>TGAGACTTCGCGGTTTTTTGGCAAAGTAGAAAGTTAAAAACTGTGATAGGTTCCCATAAATCAATTTGATTTAGAAGCCCCTAGGGGAGCTAGAACTCCAAATCCAATCAATTTCAGAAGAACCTCAAGACCTGTTATGGTATACAGCCTGAGCTACACGGTTGCCTGCTTTTCTTTCCCTGCAACTTGGCCCATAGGCGAGATACAGCGTTTCAAGTTTTGTCATTTTGTAGCTCTTGAATTTTCCCATCAGACTCATTCGATTTGTTCCAAACATAATAAGTCGGAAAAAACTTATGGGCGTGTTTGTAAATTTTAACGGAAGCCCATCTTATGTGTACACTTTGAGCTCAATTATCTCGGTTCCTAATTAAGATATCAAATATCTGTCAACTGATAAAGTATTAGTGATATTATGATAATTAATTTTACCTGGCAAAACTTATTTGACATCTCTCATAGGAACCGAGATAATTGAGCGCAAAGTGTACGAGCTATAYGCTCACAAGATTTTCTACATTTCTGTCCAGTCTTCAATTTTCTAGCTCTTCTGGAAGCCAAGATACATACGTTTGAAGTTTCTAGCGGAAGTTTCAAACTTCTAAAACTACCTCCAACTTTTTCTTGAGTATTTTTGTCCCCCAAAAGTCTGCAAGATTTCAAAACCACCAACTTCCTCCGATTTTTTTTCAGACGACTGCAGTAAATCATCATCGGATGACGAGGACACGAACGACACGTCATCTGCCTCCTCCTCATCGGCCCGCCGAAATCGTACATCATTCTCCGCCGAACAACTTGACGTACTTGAGACATCCTTTCGAGCATCCACCTATCCAGACGCTCAAGCCAAAGAGCACATCGCCAAGGAGACAGGGCTATCGGAGGAAAAAATTATGACATGGTTCTCTAATAGAAGGGCACGGTGCCGAAAGAATATGCCCATTTATCATCAGTACAATACCGCGCACGGGTTTAATGGACCACAGGTGAGCTAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATGGTATACAGCCTGAGCTAC</pcr_primer_p1>
		<pcr_primer_p2>TGGAGGTAGTTTTAGAAGTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>482</pcr_amplicon_size>
		<canonical_amplicon>TTATGGTATACAGCCTGAGCTACACGGTTGCCTGCTTTTCTTTCCCTGCAACTTGGCCCATAGGCGAGATACAGCGTTTCAAGTTTTGTCATTTTGTAGCTCTTGAATTTTCCCATCAGACTCATTCGATTTGTTCCAAACATAATAAGTCGGAAAAAACTTATGGGCGTGTTTGTAAATTTTAACGGAAGCCCATCTTATGTGTACACTTTGAGCTCAATTATCTCGGTTCCTAATTAAGATATCAAATATCTGTCAACTGATAAAGTATTAGTGATATTATGATAATTAATTTTACCTGGCAAAACTTATTTGACATCTCTCATAGGAACCGAGATAATTGAGCGCAAAGTGTACGAGCTATACGCTCACAAGATTTTCTACATTTCTGTCCAGTCTTCAATTTTCTAGCTCTTCTGGAAGCCAAGATACATACGTTTGAAGTTTCTAGCGGAAGTTTCAAACTTCTAAAACTACCTCCA</canonical_amplicon>
		<polymorphic_amplicon>TTATGGTATACAGCCTGAGCTACACGGTTGCCTGCTTTTCTTTCCCTGCAACTTGGCCCATAGGCGAGATACAGCGTTTCAAGTTTTGTCATTTTGTAGCTCTTGAATTTTCCCATCAGACTCATTCGATTTGTTCCAAACATAATAAGTCGGAAAAAACTTATGGGCGTGTTTGTAAATTTTAACGGAAGCCCATCTTATGTGTACACTTTGAGCTCAATTATCTCGGTTCCTAATTAAGATATCAAATATCTGTCAACTGATAAAGTATTAGTGATATTATGATAATTAATTTTACCTGGCAAAACTTATTTGACATCTCTCATAGGAACCGAGATAATTGAGCGCAAAGTGTACGAGCTATAYGCTCACAAGATTTTCTACATTTCTGTCCAGTCTTCAATTTTCTAGCTCTTCTGGAAGCCAAGATACATACGTTTGAAGTTTCTAGCGGAAGTTTCAAACTTCTAAAACTACCTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6419</snp_id>
        <super_contig>c003300939.Contig1</super_contig>
        <contig_pos>27917</contig_pos>
        <strand>+</strand>
        <context>ATTTATGAAC[A/T]TCTGGCAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGATTGGGTCAAGAATATAAAACGAAAGAAGGTTTAGAGAATTTATGAAC</left_flank>
        <right_flank>TCTGGCAATCAATATGGTAGGATGTGAAAAGGATGATGTGATAGGTTGAG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGAGGAGGGTGGTAACACCCACACTAAAAATTTGAAGTATGATAAGAGAAAAAATATATGAGTCACTTAGAGGTTATGGGGTACGGAAATGCGAACGATTTTGGGTAAGGAAAAAGAGAGGTGAGAAAAGAGAATAGCCAGACGATCGCAAATGGCTGGACACCCCATCCATTCCTCCGTGTATTTGCATTTTCTCTTTTGTGTCTTCGAAAGTGAGTCAGGACGCACCTGGCGCCCCGGTCCGCTAGCGAGCAGGTGTGAACGATTGCGCGTTTTTGTTGAGGTTGTGTGAAACGGAATGGTTTCTGGTTGGAGCTAGATTTCAACAGATGGAAACAAAAAAGAAGACGAATGAGGAAAATGGGCGAGAACGAGGGAAAATGAATGGACGTAAAACTCCCAAATTGTTCATTTGGGCTAGATAGAATCTGTATGTAAAACAAAAGAGATTGGGTCAAGAATATAAAACGAAAGAAGGTTTAGAGAATTTATGAACATCTGGCAATCAATATGGTAGGATGTGAAAAGGATGATGTGATAGGTTGAGAGTCCTCCAGGTAAGTTTGCATACATTAATGAACCATGAAGTTCAAACAGAATAAATTAGCATCAAGAATTTCGATCGAGATCGGTTCCGTTCAATTGGTTCACCTTTTCAAAGTTCAATGATCTGAAACCAAAGACTTGATTTGTTAATGGAGAATTTTTCAAAAGGGTTTTCACGAATTTTTTTCTGTTGAAATCGAAAACGACTGTTTTTGTACAAAGAAAATCTAAATGTTGAAATTTGAAACTTGAAACCGTCTTGTGTTGTCTGTACAGTTGTTACGACTCATGCTTCTGGAGTGGGAATGCGCAAAAAAACGGAAGCTATCTAACTTTTCAATGTTGATGTAATATTGAGATTCTGAGGAGCTAAACAGGATCTCCCAATGTGGCCTCCGGTTCGCTCCCATTAACCTCCCATTCCGGGTAATTCCCAAATGCGATTGGTAAT</canonical>
            <polymorphic>AATTGAGGAGGGTGGTAACACCCACACTAAAAATTTGAAGTATGATAAGAGAAAAAATATATGAGTCACTTAGAGGTTATGGGGTACGGAAATGCGAACGATTTTGGGTAAGGAAAAAGAGAGGTGAGAAAAGAGAATAGCCAGACGATCGCAAATGGCTGGACACCCCATCCATTCCTCCGTGTATTTGCATTTTCTCTTTTGTGTCTTCGAAAGTGAGTCAGGACGCACCTGGCGCCCCGGTCCGCTAGCGAGCAGGTGTGAACGATTGCGCGTTTTTGTTGAGGTTGTGTGAAACGGAATGGTTTCTGGTTGGAGCTAGATTTCAACAGATGGAAACAAAAAAGAAGACGAATGAGGAAAATGGGCGAGAACGAGGGAAAATGAATGGACGTAAAACTCCCAAATTGTTCATTTGGGCTAGATAGAATCTGTATGTAAAACAAAAGAGATTGGGTCAAGAATATAAAACGAAAGAAGGTTTAGAGAATTTATGAACWTCTGGCAATCAATATGGTAGGATGTGAAAAGGATGATGTGATAGGTTGAGAGTCCTCCAGGTAAGTTTGCATACATTAATGAACCATGAAGTTCAAACAGAATAAATTAGCATCAAGAATTTCGATCGAGATCGGTTCCGTTCAATTGGTTCACCTTTTCAAAGTTCAATGATCTGAAACCAAAGACTTGATTTGTTAATGGAGAATTTTTCAAAAGGGTTTTCACGAATTTTTTTCTGTTGAAATCGAAAACGACTGTTTTTGTACAAAGAAAATCTAAATGTTGAAATTTGAAACTTGAAACCGTCTTGTGTTGTCTGTACAGTTGTTACGACTCATGCTTCTGGAGTGGGAATGCGCAAAAAAACGGAAGCTATCTAACTTTTCAATGTTGATGTAATATTGAGATTCTGAGGAGCTAAACAGGATCTCCCAATGTGGCCTCCGGTTCGCTCCCATTAACCTCCCATTCCGGGTAATTCCCAAATGCGATTGGTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAGATTGGGTCAAGAATATAA</pcr_primer_p1>
		<pcr_primer_p2>AAATCAAGTCTTTGGTTTCAGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAGAGATTGGGTCAAGAATATAAAACGAAAGAAGGTTTAGAGAATTTATGAACATCTGGCAATCAATATGGTAGGATGTGAAAAGGATGATGTGATAGGTTGAGAGTCCTCCAGGTAAGTTTGCATACATTAATGAACCATGAAGTTCAAACAGAATAAATTAGCATCAAGAATTTCGATCGAGATCGGTTCCGTTCAATTGGTTCACCTTTTCAAAGTTCAATGATCTGAAACCAAAGACTTGATTT</canonical_amplicon>
		<polymorphic_amplicon>AAAGAGATTGGGTCAAGAATATAAAACGAAAGAAGGTTTAGAGAATTTATGAACWTCTGGCAATCAATATGGTAGGATGTGAAAAGGATGATGTGATAGGTTGAGAGTCCTCCAGGTAAGTTTGCATACATTAATGAACCATGAAGTTCAAACAGAATAAATTAGCATCAAGAATTTCGATCGAGATCGGTTCCGTTCAATTGGTTCACCTTTTCAAAGTTCAATGATCTGAAACCAAAGACTTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6420</snp_id>
        <super_contig>c003300939.Contig1</super_contig>
        <contig_pos>27977</contig_pos>
        <strand>+</strand>
        <context>GAGTCCTCCA[C/G]GTAAGTTTGC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAATATGGTAGGATGTGAAAAGGATGATGTGATAGGTTGAGAGTCCTCCA</left_flank>
        <right_flank>GTAAGTTTGCATACATTAATGAACCATGAAGTTCAAACAGAATAAATTAG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAGTCACTTAGAGGTTATGGGGTACGGAAATGCGAACGATTTTGGGTAAGGAAAAAGAGAGGTGAGAAAAGAGAATAGCCAGACGATCGCAAATGGCTGGACACCCCATCCATTCCTCCGTGTATTTGCATTTTCTCTTTTGTGTCTTCGAAAGTGAGTCAGGACGCACCTGGCGCCCCGGTCCGCTAGCGAGCAGGTGTGAACGATTGCGCGTTTTTGTTGAGGTTGTGTGAAACGGAATGGTTTCTGGTTGGAGCTAGATTTCAACAGATGGAAACAAAAAAGAAGACGAATGAGGAAAATGGGCGAGAACGAGGGAAAATGAATGGACGTAAAACTCCCAAATTGTTCATTTGGGCTAGATAGAATCTGTATGTAAAACAAAAGAGATTGGGTCAAGAATATAAAACGAAAGAAGGTTTAGAGAATTTATGAACATCTGGCAATCAATATGGTAGGATGTGAAAAGGATGATGTGATAGGTTGAGAGTCCTCCAGGTAAGTTTGCATACATTAATGAACCATGAAGTTCAAACAGAATAAATTAGCATCAAGAATTTCGATCGAGATCGGTTCCGTTCAATTGGTTCACCTTTTCAAAGTTCAATGATCTGAAACCAAAGACTTGATTTGTTAATGGAGAATTTTTCAAAAGGGTTTTCACGAATTTTTTTCTGTTGAAATCGAAAACGACTGTTTTTGTACAAAGAAAATCTAAATGTTGAAATTTGAAACTTGAAACCGTCTTGTGTTGTCTGTACAGTTGTTACGACTCATGCTTCTGGAGTGGGAATGCGCAAAAAAACGGAAGCTATCTAACTTTTCAATGTTGATGTAATATTGAGATTCTGAGGAGCTAAACAGGATCTCCCAATGTGGCCTCCGGTTCGCTCCCATTAACCTCCCATTCCGGGTAATTCCCAAATGCGATTGGTAATTCCTGAAACCTTCGATAACTCCCATATTTCGGGGAGAGAATTCGAGGCGTCTCCCTCATC</canonical>
            <polymorphic>ATGAGTCACTTAGAGGTTATGGGGTACGGAAATGCGAACGATTTTGGGTAAGGAAAAAGAGAGGTGAGAAAAGAGAATAGCCAGACGATCGCAAATGGCTGGACACCCCATCCATTCCTCCGTGTATTTGCATTTTCTCTTTTGTGTCTTCGAAAGTGAGTCAGGACGCACCTGGCGCCCCGGTCCGCTAGCGAGCAGGTGTGAACGATTGCGCGTTTTTGTTGAGGTTGTGTGAAACGGAATGGTTTCTGGTTGGAGCTAGATTTCAACAGATGGAAACAAAAAAGAAGACGAATGAGGAAAATGGGCGAGAACGAGGGAAAATGAATGGACGTAAAACTCCCAAATTGTTCATTTGGGCTAGATAGAATCTGTATGTAAAACAAAAGAGATTGGGTCAAGAATATAAAACGAAAGAAGGTTTAGAGAATTTATGAACATCTGGCAATCAATATGGTAGGATGTGAAAAGGATGATGTGATAGGTTGAGAGTCCTCCASGTAAGTTTGCATACATTAATGAACCATGAAGTTCAAACAGAATAAATTAGCATCAAGAATTTCGATCGAGATCGGTTCCGTTCAATTGGTTCACCTTTTCAAAGTTCAATGATCTGAAACCAAAGACTTGATTTGTTAATGGAGAATTTTTCAAAAGGGTTTTCACGAATTTTTTTCTGTTGAAATCGAAAACGACTGTTTTTGTACAAAGAAAATCTAAATGTTGAAATTTGAAACTTGAAACCGTCTTGTGTTGTCTGTACAGTTGTTACGACTCATGCTTCTGGAGTGGGAATGCGCAAAAAAACGGAAGCTATCTAACTTTTCAATGTTGATGTAATATTGAGATTCTGAGGAGCTAAACAGGATCTCCCAATGTGGCCTCCGGTTCGCTCCCATTAACCTCCCATTCCGGGTAATTCCCAAATGCGATTGGTAATTCCTGAAACCTTCGATAACTCCCATATTTCGGGGAGAGAATTCGAGGCGTCTCCCTCATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>415 318 172 87 8</canonical_bands>
                <polymorphic_bands>733 172 87 8</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>502 326 172</canonical_bands>
                <polymorphic_bands>828 172</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACGAAAGAAGGTTTAGAGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAAAAATTCTCCATTAACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAACGAAAGAAGGTTTAGAGAATTTATGAACATCTGGCAATCAATATGGTAGGATGTGAAAAGGATGATGTGATAGGTTGAGAGTCCTCCAGGTAAGTTTGCATACATTAATGAACCATGAAGTTCAAACAGAATAAATTAGCATCAAGAATTTCGATCGAGATCGGTTCCGTTCAATTGGTTCACCTTTTCAAAGTTCAATGATCTGAAACCAAAGACTTGATTTGTTAATGGAGAATTTTTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAACGAAAGAAGGTTTAGAGAATTTATGAACATCTGGCAATCAATATGGTAGGATGTGAAAAGGATGATGTGATAGGTTGAGAGTCCTCCASGTAAGTTTGCATACATTAATGAACCATGAAGTTCAAACAGAATAAATTAGCATCAAGAATTTCGATCGAGATCGGTTCCGTTCAATTGGTTCACCTTTTCAAAGTTCAATGATCTGAAACCAAAGACTTGATTTGTTAATGGAGAATTTTTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6421</snp_id>
        <super_contig>c003300939.Contig1</super_contig>
        <contig_pos>28035</contig_pos>
        <strand>+</strand>
        <context>TARCATCAAG[A/C]ATTTCGATCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCATACATTAATGAACCATGAAGTTCAAACAGAATAAATTAGCATCAAG</left_flank>
        <right_flank>ATTTCGATCGAGATCGGTTCCGTTCAATTGGTTCACCTTTTCAAAGTTCA</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAGGTGAGAAAAGAGAATAGCCAGACGATCGCAAATGGCTGGACACCCCATCCATTCCTCCGTGTATTTGCATTTTCTCTTTTGTGTCTTCGAAAGTGAGTCAGGACGCACCTGGCGCCCCGGTCCGCTAGCGAGCAGGTGTGAACGATTGCGCGTTTTTGTTGAGGTTGTGTGAAACGGAATGGTTTCTGGTTGGAGCTAGATTTCAACAGATGGAAACAAAAAAGAAGACGAATGAGGAAAATGGGCGAGAACGAGGGAAAATGAATGGACGTAAAACTCCCAAATTGTTCATTTGGGCTAGATAGAATCTGTATGTAAAACAAAAGAGATTGGGTCAAGAATATAAAACGAAAGAAGGTTTAGAGAATTTATGAACATCTGGCAATCAATATGGTAGGATGTGAAAAGGATGATGTGATAGGTTGAGAGTCCTCCAGGTAAGTTTGCATACATTAATGAACCATGAAGTTCAAACAGAATAAATTAGCATCAAGAATTTCGATCGAGATCGGTTCCGTTCAATTGGTTCACCTTTTCAAAGTTCAATGATCTGAAACCAAAGACTTGATTTGTTAATGGAGAATTTTTCAAAAGGGTTTTCACGAATTTTTTTCTGTTGAAATCGAAAACGACTGTTTTTGTACAAAGAAAATCTAAATGTTGAAATTTGAAACTTGAAACCGTCTTGTGTTGTCTGTACAGTTGTTACGACTCATGCTTCTGGAGTGGGAATGCGCAAAAAAACGGAAGCTATCTAACTTTTCAATGTTGATGTAATATTGAGATTCTGAGGAGCTAAACAGGATCTCCCAATGTGGCCTCCGGTTCGCTCCCATTAACCTCCCATTCCGGGTAATTCCCAAATGCGATTGGTAATTCCTGAAACCTTCGATAACTCCCATATTTCGGGGAGAGAATTCGAGGCGTCTCCCTCATCGGTGACGCCCCGAATTGGTCGAGTAACTCTCTGAAAATTACCTAAAAACGGAAGTGTT</canonical>
            <polymorphic>GAGAGGTGAGAAAAGAGAATAGCCAGACGATCGCAAATGGCTGGACACCCCATCCATTCCTCCGTGTATTTGCATTTTCTCTTTTGTGTCTTCGAAAGTGAGTCAGGACGCACCTGGCGCCCCGGTCCGCTAGCGAGCAGGTGTGAACGATTGCGCGTTTTTGTTGAGGTTGTGTGAAACGGAATGGTTTCTGGTTGGAGCTAGATTTCAACAGATGGAAACAAAAAAGAAGACGAATGAGGAAAATGGGCGAGAACGAGGGAAAATGAATGGACGTAAAACTCCCAAATTGTTCATTTGGGCTAGATAGAATCTGTATGTAAAACAAAAGAGATTGGGTCAAGAATATAAAACGAAAGAAGGTTTAGAGAATTTATGAACATCTGGCAATCAATATGGTAGGATGTGAAAAGGATGATGTGATAGGTTGAGAGTCCTCCAGGTAAGTTTGCATACATTAATGAACCATGAAGTTCAAACAGAATAAATTAGCATCAAGMATTTCGATCGAGATCGGTTCCGTTCAATTGGTTCACCTTTTCAAAGTTCAATGATCTGAAACCAAAGACTTGATTTGTTAATGGAGAATTTTTCAAAAGGGTTTTCACGAATTTTTTTCTGTTGAAATCGAAAACGACTGTTTTTGTACAAAGAAAATCTAAATGTTGAAATTTGAAACTTGAAACCGTCTTGTGTTGTCTGTACAGTTGTTACGACTCATGCTTCTGGAGTGGGAATGCGCAAAAAAACGGAAGCTATCTAACTTTTCAATGTTGATGTAATATTGAGATTCTGAGGAGCTAAACAGGATCTCCCAATGTGGCCTCCGGTTCGCTCCCATTAACCTCCCATTCCGGGTAATTCCCAAATGCGATTGGTAATTCCTGAAACCTTCGATAACTCCCATATTTCGGGGAGAGAATTCGAGGCGTCTCCCTCATCGGTGACGCCCCGAATTGGTCGAGTAACTCTCTGAAAATTACCTAAAAACGGAAGTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>370 251 129 87 80 60 23</canonical_bands>
                <polymorphic_bands>370 251 216 80 60 23</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>237 158 155 120 116 104 97 13</canonical_bands>
                <polymorphic_bands>237 168 158 120 116 104 97</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>287 190 116 83 61 60 41 34 26 23 23 23 20 13</canonical_bands>
                <polymorphic_bands>287 190 116 83 61 60 41 39 34 23 23 23 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACGAAAGAAGGTTTAGAGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAAAAATTCTCCATTAACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAACGAAAGAAGGTTTAGAGAATTTATGAACATCTGGCAATCAATATGGTAGGATGTGAAAAGGATGATGTGATAGGTTGAGAGTCCTCCAGGTAAGTTTGCATACATTAATGAACCATGAAGTTCAAACAGAATAAATTAGCATCAAGAATTTCGATCGAGATCGGTTCCGTTCAATTGGTTCACCTTTTCAAAGTTCAATGATCTGAAACCAAAGACTTGATTTGTTAATGGAGAATTTTTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAACGAAAGAAGGTTTAGAGAATTTATGAACATCTGGCAATCAATATGGTAGGATGTGAAAAGGATGATGTGATAGGTTGAGAGTCCTCCAGGTAAGTTTGCATACATTAATGAACCATGAAGTTCAAACAGAATAAATTAGCATCAAGMATTTCGATCGAGATCGGTTCCGTTCAATTGGTTCACCTTTTCAAAGTTCAATGATCTGAAACCAAAGACTTGATTTGTTAATGGAGAATTTTTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6422</snp_id>
        <super_contig>c003300939.Contig1</super_contig>
        <contig_pos>31315</contig_pos>
        <strand></strand>
        <context>CATGTGATAT[G/T]AAACATTCCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGAAATTTCGAAATACTTCCTATGCCTTGAACGGACGTTTCATGTGATAT</left_flank>
        <right_flank>AAACATTCCCAATCAGTAGCAGCAATCTTTTGAAACCGAGAGTGCAGCCA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCTCCACATTCTCAATTTCCCTCTATTCATCCCGAACAAGTCTGTCATCAGATGACAATCCTTATCAAATGTTCGCATCTTCTCCAATTTCGAACACACTCACACTCCTGTTTTCGAGGTCACTCTTGTCCGGTAAACATTGCATAATTGAATAGTCTAAACTTTTCATTTCTTCTAGTGATATCAAAACCCCTCTTTTTCATTTTCATGCCTTTTCCCGTCTAATTTGGATCAAGTTACATTTGGAAAATTGATAGTTTTGGATGTGCCAGAATACGAGGAAAACATAACAAGCCTCTTTTTTTGACTACTCCAACCTCAAATAAAATGTATAGATGCAATTTTATTATCTGTTCGTAAGAGACCAAAAATCGTAATTAATGAGTTTACTTTCGTTTTTCTTGAAGGTTAAAAAGGTGAAGTCCTCGTGTCCAGATGTTTGAAATATCGAAATTTCGAAATACTTCCTATGCCTTGAACGGACGTTTCATGTGATATGAAACATTCCCAATCAGTAGCAGCAATCTTTTGAAACCGAGAGTGCAGCCACCAATCTGTCTGTCTCCTCGCTCAGATTTTATCGACTGATATGATAATATCATATAATGATCGGTGTTCACAGCGCATGGCTATCGAGTTTGCCGAATTTTTCGGCACCATAGCTCAGCTGGTAGCAACACGGCACCCTAACGGCGAGCCAACACTATCAACTTCTCGAAAAAAAAAACCTTTTCAACTTTAAGCTCAATGATTACAATTTCTGTAAAAGATGCAAGAGAACTGTTGATTCTTGAATTGTTTTGTTACATTATCAGAAACATTTTATCAGTTGAACATTTTTTGAAATCTCTCATAGAAACTGAGATAATTGAGCTCAAAATAAAAGTAAAGAGCGGGCATTTGTGTTTCTCGTCAAAATAATTTAAAATATATCGAAAATACCACATGAGAGCCAAATTTTCTGTTCCTTTGTTCTTGGAAATTAAATATATTTTTATC</canonical>
            <polymorphic>CCCTCCACATTCTCAATTTCCCTCTATTCATCCCGAACAAGTCTGTCATCAGATGACAATCCTTATCAAATGTTCGCATCTTCTCCAATTTCGAACACACTCACACTCCTGTTTTCGAGGTCACTCTTGTCCGGTAAACATTGCATAATTGAATAGTCTAAACTTTTCATTTCTTCTAGTGATATCAAAACCCCTCTTTTTCATTTTCATGCCTTTTCCCGTCTAATTTGGATCAAGTTACATTTGGAAAATTGATAGTTTTGGATGTGCCAGAATACGAGGAAAACATAACAAGCCTCTTTTTTTGACTACTCCAACCTCAAATAAAATGTATAGATGCAATTTTATTATCTGTTCGTAAGAGACCAAAAATCGTAATTAATGAGTTTACTTTCGTTTTTCTTGAAGGTTAAAAAGGTGAAGTCCTCGTGTCCAGATGTTTGAAATATCGAAATTTCGAAATACTTCCTATGCCTTGAACGGACGTTTCATGTGATATKAAACATTCCCAATCAGTAGCAGCAATCTTTTGAAACCGAGAGTGCAGCCACCAATCTGTCTGTCTCCTCGCTCAGATTTTATCGACTGATATGATAATATCATATAATGATCGGTGTTCACAGCGCATGGCTATCGAGTTTGCCGAATTTTTCGGCACCATAGCTCAGCTGGTAGCAACACGGCACCCTAACGGCGAGCCAACACTATCAACTTCTCGAAAAAAAAAACCTTTTCAACTTTAAGCTCAATGATTACAATTTCTGTAAAAGATGCAAGAGAACTGTTGATTCTTGAATTGTTTTGTTACATTATCAGAAACATTTTATCAGTTGAACATTTTTTGAAATCTCTCATAGAAACTGAGATAATTGAGCTCAAAATAAAAGTAAAGAGCGGGCATTTGTGTTTCTCGTCAAAATAATTTAAAATATATCGAAAATACCACATGAGAGCCAAATTTTCTGTTCCTTTGTTCTTGGAAATTAAATATATTTTTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCTGTTCGTAAGAGACCAAAA</pcr_primer_p1>
		<pcr_primer_p2>TCATATCAGTCGATAAAATCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TATCTGTTCGTAAGAGACCAAAAATCGTAATTAATGAGTTTACTTTCGTTTTTCTTGAAGGTTAAAAAGGTGAAGTCCTCGTGTCCAGATGTTTGAAATATCGAAATTTCGAAATACTTCCTATGCCTTGAACGGACGTTTCATGTGATATGAAACATTCCCAATCAGTAGCAGCAATCTTTTGAAACCGAGAGTGCAGCCACCAATCTGTCTGTCTCCTCGCTCAGATTTTATCGACTGATATGA</canonical_amplicon>
		<polymorphic_amplicon>TATCTGTTCGTAAGAGACCAAAAATCGTAATTAATGAGTTTACTTTCGTTTTTCTTGAAGGTTAAAAAGGTGAAGTCCTCGTGTCCAGATGTTTGAAATATCGAAATTTCGAAATACTTCCTATGCCTTGAACGGACGTTTCATGTGATATKAAACATTCCCAATCAGTAGCAGCAATCTTTTGAAACCGAGAGTGCAGCCACCAATCTGTCTGTCTCCTCGCTCAGATTTTATCGACTGATATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6423</snp_id>
        <super_contig>c003300939.Contig1</super_contig>
        <contig_pos>80826</contig_pos>
        <strand>+</strand>
        <context>GTTTTTTGAC[A/G]ACGKGCGACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTCGCCAGAGAACCGCCCATACTTACGCGAAGAATTGCAGTTTTTTGAC</left_flank>
        <right_flank>ACGGGCGACGTCCTCCTACACCACCCGGAGCCATCACAAATATGCACAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAGGGGACAGACTTCTGACCAGATGAAAGGGGAGGAGCAAGGAACTATAAGTAAAAATGGAAACTGAAACAATCAAGAGCGATTCAGATGGTATGATAAAAATTGAAAAAAAAATTGTTCTTGAATTTGTGGTAAGTAAATATGTATCTTATTCAGAACTTTGAGGCTTTGTAGTAAGAGTATATATTGTTAAAAGATGTTCGTATGGCTTCTTCTTTCTTCTTTTTTCATCTCCTAACTAAAAACAGCCCGGAAAAAAGAAGGAAACGAAAAAACAAATGAAAACGTTTGAAATTCGGTGTGTGGTTTTGGGTGTGTGGGGGTGGAAGGGTTAGAAGAGAAGAGGGTGCTAAACCCCACTATTTTTCGCCTCCGTTTCCGTTTTTTTCCAGTTTTGCTACAAAACGTTATCTGGACAGACGGATGGCGTCGGGGGCCGTTCATCACCTCGCCAGAGAACCGCCCATACTTACGCGAAGAATTGCAGTTTTTTGACAACGGGCGACGTCCTCCTACACCACCCGGAGCCATCACAAATATGCACAAAAACTCGAGTTTTTTTTTCTATTTTTCCTTTTTTTTTTTCGTCACCAAAAATTTTTGTCGAAAAAAAAACGGAGCCTCGCCCGAGATGGAGAGGAAGAAAAAAAATAATGAGCGACGTGTGGGAGATTAGTTGTTCGCGAAGGAAGAAAAAGAAAATGGAAGATGAGGGAAAGAGATTGATGTTCAATTTTCACATCTTCACATGTTTCTGGAAATCCAATTGAGGAACCATAAAATAAGATAAAAAAGTTTTAAGTTCATTTTAATCCTAAAACTTTTTTGCGTAAAATGTTGCCGGAGAGTTGTGTGAAAAAGAAAAAAAGAAGAAGCATTCGAGAGGAAAACGAAGAAAGAAAAGGGGAAAGAAAAGACGAAAATTCGGAAAAGCCGGGGACCAGCAGGCGACCCAGTCAGTGAGGGGGAGAATTTTAAAACAGGACGGCCGGCGGAG</canonical>
            <polymorphic>AAGAAGGGGACAGACTTCTGACCAGATGAAAGGGGAGGAGCAAGGAACTATAAGTAAAAATGGAAACTGAAACAATCAAGAGCGATTCAGATGGTATGATAAAAATTGAAAAAAAAATTGTTCTTGAATTTGTGGTAAGTAAATATGTATCTTATTCAGAACTTTGAGGCTTTGTAGTAAGAGTATATATTGTTAAAAGATGTTCGTATGGCTTCTTCTTTCTTCTTTTTTCATCTCCTAACTAAAAACAGCCCGGAAAAAAGAAGGAAACGAAAAAACAAATGAAAACGTTTGAAATTCGGTGTGTGGTTTTGGGTGTGTGGGGGTGGAAGGGTTAGAAGAGAAGAGGGTGCTAAACCCCACTATTTTTCGCCTCCGTTTCCGTTTTTTTCCAGTTTTGCTACAAAACGTTATCTGGACAGACGGATGGCGTCGGGGGCCGTTCATCACCTCGCCAGAGAACCGCCCATACTTACGCGAAGAATTGCAGTTTTTTGACRACGGGCGACGTCCTCCTACACCACCCGGAGCCATCACAAATATGCACAAAAACTCGAGTTTTTTTTTCTATTTTTCCTTTTTTTTTTTCGTCACCAAAAATTTTTGTCGAAAAAAAAACGGAGCCTCGCCCGAGATGGAGAGGAAGAAAAAAAATAATGAGCGACGTGTGGGAGATTAGTTGTTCGCGAAGGAAGAAAAAGAAAATGGAAGATGAGGGAAAGAGATTGATGTTCAATTTTCACATCTTCACATGTTTCTGGAAATCCAATTGAGGAACCATAAAATAAGATAAAAAAGTTTTAAGTTCATTTTAATCCTAAAACTTTTTTGCGTAAAATGTTGCCGGAGAGTTGTGTGAAAAAGAAAAAAAGAAGAAGCATTCGAGAGGAAAACGAAGAAAGAAAAGGGGAAAGAAAAGACGAAAATTCGGAAAAGCCGGGGACCAGCAGGCGACCCAGTCAGTGAGGGGGAGAATTTTAAAACAGGACGGCCGGCGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTAGAAGAGAAGAGGGTGCTAA</pcr_primer_p1>
		<pcr_primer_p2>ACTCGAGTTTTTGTGCATATTT</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>GTTAGAAGAGAAGAGGGTGCTAAACCCCACTATTTTTCGCCTCCGTTTCCGTTTTTTTCCAGTTTTGCTACAAAACGTTATCTGGACAGACGGATGGCGTCGGGGGCCGTTCATCACCTCGCCAGAGAACCGCCCATACTTACGCGAAGAATTGCAGTTTTTTGACAACGGGCGACGTCCTCCTACACCACCCGGAGCCATCACAAATATGCACAAAAACTCGAGT</canonical_amplicon>
		<polymorphic_amplicon>GTTAGAAGAGAAGAGGGTGCTAAACCCCACTATTTTTCGCCTCCGTTTCCGTTTTTTTCCAGTTTTGCTACAAAACGTTATCTGGACAGACGGATGGCGTCGGGGGCCGTTCATCACCTCGCCAGAGAACCGCCCATACTTACGCGAAGAATTGCAGTTTTTTGACRACGGGCGACGTCCTCCTACACCACCCGGAGCCATCACAAATATGCACAAAAACTCGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6444</snp_id>
        <super_contig>c003400673.Contig1</super_contig>
        <contig_pos>27813</contig_pos>
        <strand>+</strand>
        <context>TTTTTGGGTG[C/T]AGAACTTTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCAGAAAAAAGTGTCAAATTTGAAAATTGAATTTTTGGCTTTTTGGGTG</left_flank>
        <right_flank>AGAACTTTCCCAGGAAGCTCAAGAGCTCATTTTCAGGCTGAAAATTCCAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCCAATTGCTCAGCACTGATTATAGCCTTTTTGAACGGATTTTCGGCGGAAATCTCCAGTTTTCAGTTTAGGAAAAAGCCAAATTTCCCCCTTAGAATTTCAAGGGTTCGGAGCAATCAGTGGATTTTGGACCATTTTCAGCCAATTTTTCATGTTCCAGACGGCGGGTAGTTTGCCGTGGACCAAAACGTCCATCCTTTGAGAAATAAGGTTAGCAATCCAGAAGCAGCTAGGGTCTCAAGTCTTCGGTAGGAGGACGCCTACTCATTCTAAATGTACCGTAACCAAAATACGGGGTTTTTTTTCTAAAACTTTCCTTGGGAATTCCAGGAATTTGGGATTTATAGAAAATTCAGAGGAACAAGTTTCTATGTATTTCCGGGTCGTTCTAAATAGCAAGGACTTACCATCAAACTACACCTAATTCTGTGTAGTTGATAGCTGTCAATCAGAAAAAAGTGTCAAATTTGAAAATTGAATTTTTGGCTTTTTGGGTGCAGAACTTTCCCAGGAAGCTCAAGAGCTCATTTTCAGGCTGAAAATTCCAGCGTCAAGCCAGCGAGACAAATCTGGACCATTTTAGCTTCAATGTTGGCTTGAAAATCGACGCTAGAAAGTCATTTACAGCCAAAATCAGCGACGAGAATGTTCAGATTCTTTTAAGTCATTATGGGCCGTTTTCGCTTCAATTCTAGCTAGGAATATCGGTTCAAAAGCTTCTAGAGTCTTCTAGAATCATCTCCAACCGGCGAGCAAGACTTCAAATAGTCCAAAGATCGTTCAGAAACTTCCGGGAGCTGTGTTGGACTGGCTCCGAAATTCGATTCCAAAGCTTCGAGAACCTTCTAGAATGACATAACTTCCAGAACTCGATTTTTCCCCAAAGTTCCAGCCCCCAAATTTCAATTTCAGCCAGCAGCAGTAGTAGTAGTAGTAGTTCGTCTTCTGATGCCTCCTGCCTTCCAAACCACCGTCCAAGTAGTTAATAGGCTCATAAA</canonical>
            <polymorphic>TTTCCAATTGCTCAGCACTGATTATAGCCTTTTTGAACGGATTTTCGGCGGAAATCTCCAGTTTTCAGTTTAGGAAAAAGCCAAATTTCCCCCTTAGAATTTCAAGGGTTCGGAGCAATCAGTGGATTTTGGACCATTTTCAGCCAATTTTTCATGTTCCAGACGGCGGGTAGTTTGCCGTGGACCAAAACGTCCATCCTTTGAGAAATAAGGTTAGCAATCCAGAAGCAGCTAGGGTCTCAAGTCTTCGGTAGGAGGACGCCTACTCATTCTAAATGTACCGTAACCAAAATACGGGGTTTTTTTTCTAAAACTTTCCTTGGGAATTCCAGGAATTTGGGATTTATAGAAAATTCAGAGGAACAAGTTTCTATGTATTTCCGGGTCGTTCTAAATAGCAAGGACTTACCATCAAACTACACCTAATTCTGTGTAGTTGATAGCTGTCAATCAGAAAAAAGTGTCAAATTTGAAAATTGAATTTTTGGCTTTTTGGGTGYAGAACTTTCCCAGGAAGCTCAAGAGCTCATTTTCAGGCTGAAAATTCCAGCGTCAAGCCAGCGAGACAAATCTGGACCATTTTAGCTTCAATGTTGGCTTGAAAATCGACGCTAGAAAGTCATTTACAGCCAAAATCAGCGACGAGAATGTTCAGATTCTTTTAAGTCATTATGGGCCGTTTTCGCTTCAATTCTAGCTAGGAATATCGGTTCAAAAGCTTCTAGAGTCTTCTAGAATCATCTCCAACCGGCGAGCAAGACTTCAAATAGTCCAAAGATCGTTCAGAAACTTCCGGGAGCTGTGTTGGACTGGCTCCGAAATTCGATTCCAAAGCTTCGAGAACCTTCTAGAATGACATAACTTCCAGAACTCGATTTTTCCCCAAAGTTCCAGCCCCCAAATTTCAATTTCAGCCAGCAGCAGTAGTAGTAGTAGTAGTTCGTCTTCTGATGCCTCCTGCCTTCCAAACCACCGTCCAAGTAGTTAATAGGCTCATAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGATTTATAGAAAATTCAGAGG</pcr_primer_p1>
		<pcr_primer_p2>CTAAAATGGTCCAGATTTGTCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGGATTTATAGAAAATTCAGAGGAACAAGTTTCTATGTATTTCCGGGTCGTTCTAAATAGCAAGGACTTACCATCAAACTACACCTAATTCTGTGTAGTTGATAGCTGTCAATCAGAAAAAAGTGTCAAATTTGAAAATTGAATTTTTGGCTTTTTGGGTGCAGAACTTTCCCAGGAAGCTCAAGAGCTCATTTTCAGGCTGAAAATTCCAGCGTCAAGCCAGCGAGACAAATCTGGACCATTTTAG</canonical_amplicon>
		<polymorphic_amplicon>GGGATTTATAGAAAATTCAGAGGAACAAGTTTCTATGTATTTCCGGGTCGTTCTAAATAGCAAGGACTTACCATCAAACTACACCTAATTCTGTGTAGTTGATAGCTGTCAATCAGAAAAAAGTGTCAAATTTGAAAATTGAATTTTTGGCTTTTTGGGTGYAGAACTTTCCCAGGAAGCTCAAGAGCTCATTTTCAGGCTGAAAATTCCAGCGTCAAGCCAGCGAGACAAATCTGGACCATTTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6445</snp_id>
        <super_contig>c003400673.Contig1</super_contig>
        <contig_pos>27939</contig_pos>
        <strand>+</strand>
        <context>AAAGTCATTT[A/T]CAGCCAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCATTTTAGCTTCAATGTTGGCTTGAAAATCGACGCTAGAAAGTCATTT</left_flank>
        <right_flank>CAGCCAAAATCAGCGACGAGAATGTTCAGATTCTTTTAAGTCATTATGGG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGGACCATTTTCAGCCAATTTTTCATGTTCCAGACGGCGGGTAGTTTGCCGTGGACCAAAACGTCCATCCTTTGAGAAATAAGGTTAGCAATCCAGAAGCAGCTAGGGTCTCAAGTCTTCGGTAGGAGGACGCCTACTCATTCTAAATGTACCGTAACCAAAATACGGGGTTTTTTTTCTAAAACTTTCCTTGGGAATTCCAGGAATTTGGGATTTATAGAAAATTCAGAGGAACAAGTTTCTATGTATTTCCGGGTCGTTCTAAATAGCAAGGACTTACCATCAAACTACACCTAATTCTGTGTAGTTGATAGCTGTCAATCAGAAAAAAGTGTCAAATTTGAAAATTGAATTTTTGGCTTTTTGGGTGCAGAACTTTCCCAGGAAGCTCAAGAGCTCATTTTCAGGCTGAAAATTCCAGCGTCAAGCCAGCGAGACAAATCTGGACCATTTTAGCTTCAATGTTGGCTTGAAAATCGACGCTAGAAAGTCATTTACAGCCAAAATCAGCGACGAGAATGTTCAGATTCTTTTAAGTCATTATGGGCCGTTTTCGCTTCAATTCTAGCTAGGAATATCGGTTCAAAAGCTTCTAGAGTCTTCTAGAATCATCTCCAACCGGCGAGCAAGACTTCAAATAGTCCAAAGATCGTTCAGAAACTTCCGGGAGCTGTGTTGGACTGGCTCCGAAATTCGATTCCAAAGCTTCGAGAACCTTCTAGAATGACATAACTTCCAGAACTCGATTTTTCCCCAAAGTTCCAGCCCCCAAATTTCAATTTCAGCCAGCAGCAGTAGTAGTAGTAGTAGTTCGTCTTCTGATGCCTCCTGCCTTCCAAACCACCGTCCAAGTAGTTAATAGGCTCATAAAAGTACACATCTTAATGATGGTTTGTACTTTTCCTCCTGTCATAATGAGAGGAGGAGGGAGGTTTCAAATCAGCTCTAATCAGCAAATCAGAGGCGATTAAAATATGTGGCAACACACTCAAAAAGT</canonical>
            <polymorphic>TTTTGGACCATTTTCAGCCAATTTTTCATGTTCCAGACGGCGGGTAGTTTGCCGTGGACCAAAACGTCCATCCTTTGAGAAATAAGGTTAGCAATCCAGAAGCAGCTAGGGTCTCAAGTCTTCGGTAGGAGGACGCCTACTCATTCTAAATGTACCGTAACCAAAATACGGGGTTTTTTTTCTAAAACTTTCCTTGGGAATTCCAGGAATTTGGGATTTATAGAAAATTCAGAGGAACAAGTTTCTATGTATTTCCGGGTCGTTCTAAATAGCAAGGACTTACCATCAAACTACACCTAATTCTGTGTAGTTGATAGCTGTCAATCAGAAAAAAGTGTCAAATTTGAAAATTGAATTTTTGGCTTTTTGGGTGCAGAACTTTCCCAGGAAGCTCAAGAGCTCATTTTCAGGCTGAAAATTCCAGCGTCAAGCCAGCGAGACAAATCTGGACCATTTTAGCTTCAATGTTGGCTTGAAAATCGACGCTAGAAAGTCATTTWCAGCCAAAATCAGCGACGAGAATGTTCAGATTCTTTTAAGTCATTATGGGCCGTTTTCGCTTCAATTCTAGCTAGGAATATCGGTTCAAAAGCTTCTAGAGTCTTCTAGAATCATCTCCAACCGGCGAGCAAGACTTCAAATAGTCCAAAGATCGTTCAGAAACTTCCGGGAGCTGTGTTGGACTGGCTCCGAAATTCGATTCCAAAGCTTCGAGAACCTTCTAGAATGACATAACTTCCAGAACTCGATTTTTCCCCAAAGTTCCAGCCCCCAAATTTCAATTTCAGCCAGCAGCAGTAGTAGTAGTAGTAGTTCGTCTTCTGATGCCTCCTGCCTTCCAAACCACCGTCCAAGTAGTTAATAGGCTCATAAAAGTACACATCTTAATGATGGTTTGTACTTTTCCTCCTGTCATAATGAGAGGAGGAGGGAGGTTTCAAATCAGCTCTAATCAGCAAATCAGAGGCGATTAAAATATGTGGCAACACACTCAAAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATAGCTGTCAATCAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GGCCCATAATGACTTAAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TGATAGCTGTCAATCAGAAAAAAGTGTCAAATTTGAAAATTGAATTTTTGGCTTTTTGGGTGCAGAACTTTCCCAGGAAGCTCAAGAGCTCATTTTCAGGCTGAAAATTCCAGCGTCAAGCCAGCGAGACAAATCTGGACCATTTTAGCTTCAATGTTGGCTTGAAAATCGACGCTAGAAAGTCATTTACAGCCAAAATCAGCGACGAGAATGTTCAGATTCTTTTAAGTCATTATGGGCC</canonical_amplicon>
		<polymorphic_amplicon>TGATAGCTGTCAATCAGAAAAAAGTGTCAAATTTGAAAATTGAATTTTTGGCTTTTTGGGTGCAGAACTTTCCCAGGAAGCTCAAGAGCTCATTTTCAGGCTGAAAATTCCAGCGTCAAGCCAGCGAGACAAATCTGGACCATTTTAGCTTCAATGTTGGCTTGAAAATCGACGCTAGAAAGTCATTTWCAGCCAAAATCAGCGACGAGAATGTTCAGATTCTTTTAAGTCATTATGGGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6446</snp_id>
        <super_contig>c003400673.Contig1</super_contig>
        <contig_pos>28048</contig_pos>
        <strand></strand>
        <context>gagtcttcta[G/T]aatcatctcc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCTTCAATTCTAGCTAGGAATATCGGTTCAAAAGCTTCTAGAGTCTTCTA</left_flank>
        <right_flank>AATCATCTCCAACCGGCGAGCAAGACTTCAAATAGTCCAAAGATCGTTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTCTCAAGTCTTCGGTAGGAGGACGCCTACTCATTCTAAATGTACCGTAACCAAAATACGGGGTTTTTTTTCTAAAACTTTCCTTGGGAATTCCAGGAATTTGGGATTTATAGAAAATTCAGAGGAACAAGTTTCTATGTATTTCCGGGTCGTTCTAAATAGCAAGGACTTACCATCAAACTACACCTAATTCTGTGTAGTTGATAGCTGTCAATCAGAAAAAAGTGTCAAATTTGAAAATTGAATTTTTGGCTTTTTGGGTGCAGAACTTTCCCAGGAAGCTCAAGAGCTCATTTTCAGGCTGAAAATTCCAGCGTCAAGCCAGCGAGACAAATCTGGACCATTTTAGCTTCAATGTTGGCTTGAAAATCGACGCTAGAAAGTCATTTACAGCCAAAATCAGCGACGAGAATGTTCAGATTCTTTTAAGTCATTATGGGCCGTTTTCGCTTCAATTCTAGCTAGGAATATCGGTTCAAAAGCTTCTAGAGTCTTCTAGAATCATCTCCAACCGGCGAGCAAGACTTCAAATAGTCCAAAGATCGTTCAGAAACTTCCGGGAGCTGTGTTGGACTGGCTCCGAAATTCGATTCCAAAGCTTCGAGAACCTTCTAGAATGACATAACTTCCAGAACTCGATTTTTCCCCAAAGTTCCAGCCCCCAAATTTCAATTTCAGCCAGCAGCAGTAGTAGTAGTAGTAGTTCGTCTTCTGATGCCTCCTGCCTTCCAAACCACCGTCCAAGTAGTTAATAGGCTCATAAAAGTACACATCTTAATGATGGTTTGTACTTTTCCTCCTGTCATAATGAGAGGAGGAGGGAGGTTTCAAATCAGCTCTAATCAGCAAATCAGAGGCGATTAAAATATGTGGCAACACACTCAAAAAGTGGGAGAGAAGGGGGCGGAGCCTAAATCGGTGTTCCATTGTTTTACGTCATACTGGGTGATAGTCGGGAATGATAGTCGGGGGGAGGAGGAATGATAGCAGATAGCAAGA</canonical>
            <polymorphic>GGTCTCAAGTCTTCGGTAGGAGGACGCCTACTCATTCTAAATGTACCGTAACCAAAATACGGGGTTTTTTTTCTAAAACTTTCCTTGGGAATTCCAGGAATTTGGGATTTATAGAAAATTCAGAGGAACAAGTTTCTATGTATTTCCGGGTCGTTCTAAATAGCAAGGACTTACCATCAAACTACACCTAATTCTGTGTAGTTGATAGCTGTCAATCAGAAAAAAGTGTCAAATTTGAAAATTGAATTTTTGGCTTTTTGGGTGCAGAACTTTCCCAGGAAGCTCAAGAGCTCATTTTCAGGCTGAAAATTCCAGCGTCAAGCCAGCGAGACAAATCTGGACCATTTTAGCTTCAATGTTGGCTTGAAAATCGACGCTAGAAAGTCATTTACAGCCAAAATCAGCGACGAGAATGTTCAGATTCTTTTAAGTCATTATGGGCCGTTTTCGCTTCAATTCTAGCTAGGAATATCGGTTCAAAAGCTTCTAGAGTCTTCTAKAATCATCTCCAACCGGCGAGCAAGACTTCAAATAGTCCAAAGATCGTTCAGAAACTTCCGGGAGCTGTGTTGGACTGGCTCCGAAATTCGATTCCAAAGCTTCGAGAACCTTCTAGAATGACATAACTTCCAGAACTCGATTTTTCCCCAAAGTTCCAGCCCCCAAATTTCAATTTCAGCCAGCAGCAGTAGTAGTAGTAGTAGTTCGTCTTCTGATGCCTCCTGCCTTCCAAACCACCGTCCAAGTAGTTAATAGGCTCATAAAAGTACACATCTTAATGATGGTTTGTACTTTTCCTCCTGTCATAATGAGAGGAGGAGGGAGGTTTCAAATCAGCTCTAATCAGCAAATCAGAGGCGATTAAAATATGTGGCAACACACTCAAAAAGTGGGAGAGAAGGGGGCGGAGCCTAAATCGGTGTTCCATTGTTTTACGTCATACTGGGTGATAGTCGGGAATGATAGTCGGGGGGAGGAGGAATGATAGCAGATAGCAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>387 377 116 82 24 10 4</canonical_bands>
                <polymorphic_bands>387 377 126 82 24 4</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>420 410 90 70 10</canonical_bands>
                <polymorphic_bands>420 410 100 70</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>325 285 150 106 52 45 17 10 10</canonical_bands>
                <polymorphic_bands>325 285 150 116 52 45 17 10</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>420 410 90 80</canonical_bands>
                <polymorphic_bands>420 410 170</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>486 388 116 10</canonical_bands>
                <polymorphic_bands>486 388 126</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAGATTCTTTTAAGTCATTATGG</pcr_primer_p1>
		<pcr_primer_p2>TATTAACTACTTGGACGGTGGT</pcr_primer_p2>
		<pcr_amplicon_size>339</pcr_amplicon_size>
		<canonical_amplicon>TCAGATTCTTTTAAGTCATTATGGGCCGTTTTCGCTTCAATTCTAGCTAGGAATATCGGTTCAAAAGCTTCTAGAGTCTTCTAGAATCATCTCCAACCGGCGAGCAAGACTTCAAATAGTCCAAAGATCGTTCAGAAACTTCCGGGAGCTGTGTTGGACTGGCTCCGAAATTCGATTCCAAAGCTTCGAGAACCTTCTAGAATGACATAACTTCCAGAACTCGATTTTTCCCCAAAGTTCCAGCCCCCAAATTTCAATTTCAGCCAGCAGCAGTAGTAGTAGTAGTAGTTCGTCTTCTGATGCCTCCTGCCTTCCAAACCACCGTCCAAGTAGTTAATA</canonical_amplicon>
		<polymorphic_amplicon>TCAGATTCTTTTAAGTCATTATGGGCCGTTTTCGCTTCAATTCTAGCTAGGAATATCGGTTCAAAAGCTTCTAGAGTCTTCTAKAATCATCTCCAACCGGCGAGCAAGACTTCAAATAGTCCAAAGATCGTTCAGAAACTTCCGGGAGCTGTGTTGGACTGGCTCCGAAATTCGATTCCAAAGCTTCGAGAACCTTCTAGAATGACATAACTTCCAGAACTCGATTTTTCCCCAAAGTTCCAGCCCCCAAATTTCAATTTCAGCCAGCAGCAGTAGTAGTAGTAGTAGTTCGTCTTCTGATGCCTCCTGCCTTCCAAACCACCGTCCAAGTAGTTAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6448</snp_id>
        <super_contig>c003400673.Contig1</super_contig>
        <contig_pos>79942</contig_pos>
        <strand>+</strand>
        <context>AAAGTTTTCA[A/G]AAACTTCAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTTTTGTATTTTTCAGATTTCTGAAAACTAAAACTTTCAAAGTTTTCA</left_flank>
        <right_flank>AAACTTCAGATGTCTGTATTCTTCATTCCCAAATCCGATGTTATGAAGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTGAAATTTTAGGATTTTAGGTGTTTAAATGATTTTTTGATGTTTTTAGGATTTTCGAGTTTTTAGTTTAATTTATGGGAATTTTAGAATTTTCTTTTCTCAAAATTTTCCAGAATTGACTTTTTAGGACTTCAGGAATTTTTCGGGATTTTGAATATCAGAAAATTTTAAGTTTTTAGAATTCTTTAGGTTTTTTGAAACCTATTTTAGAAATATTTACACTTTTGGGTTATCAGAAATTTCAGAAATTTAAAATTCTAAAAAAATGTCTTCAAATTACTCCTGATGTTTTGAAAAATTATATGTTTTGAAGCCAGAATAAAAATTCTATTTCAAAAGAGAGAAAAATTAATTTCTCAAGATTCTACCCAAAGATTGTGGTGGGGACTCTTATTTTTGGTGCATCTATGTTTAGAAGTCGAGAATTGGAAGGTTCCGATTTTCAAAGTTTTTGTATTTTTCAGATTTCTGAAAACTAAAACTTTCAAAGTTTTCAGAAACTTCAGATGTCTGTATTCTTCATTCCCAAATCCGATGTTATGAAGAGAAGAATGGAGTGTTTGAAGGAGTGCAGGGTAACTTTTCAGCCTATTTTCAGCTCATTTTCACCCAAATTTGTTTTCCAGGACATCATTATTCTCACGGCCCACAAACTTGAACAATCCTATCACCAGAACGGAAAAGAAACTGAAATTCCATTTTATATAACCCAGTGGCTCGACGAACTCGTCCCAAAAATGGACGCACTTGACATCAAATTGAATAAGGAGATCATTTTGAATGTCTCGGTTAGTTTGGATTATATCTAGAAAACTAAAAAAGCTAAACAAAACTTGTCTACCACAAAAATGTGTAGAATTTAATAAGCTACATTTATGTAGTTGAAAATTTTTTGTAGCTTTTTTGGTATTTGAGATATGCGCCTTTAAAGTTGGCGCGCGCAAAGAAGCTGCGACGTGAGCGCGCGCGCCTTGATCTCAAAAAAAGCGCAGATCTC</canonical>
            <polymorphic>GAATTGAAATTTTAGGATTTTAGGTGTTTAAATGATTTTTTGATGTTTTTAGGATTTTCGAGTTTTTAGTTTAATTTATGGGAATTTTAGAATTTTCTTTTCTCAAAATTTTCCAGAATTGACTTTTTAGGACTTCAGGAATTTTTCGGGATTTTGAATATCAGAAAATTTTAAGTTTTTAGAATTCTTTAGGTTTTTTGAAACCTATTTTAGAAATATTTACACTTTTGGGTTATCAGAAATTTCAGAAATTTAAAATTCTAAAAAAATGTCTTCAAATTACTCCTGATGTTTTGAAAAATTATATGTTTTGAAGCCAGAATAAAAATTCTATTTCAAAAGAGAGAAAAATTAATTTCTCAAGATTCTACCCAAAGATTGTGGTGGGGACTCTTATTTTTGGTGCATCTATGTTTAGAAGTCGAGAATTGGAAGGTTCCGATTTTCAAAGTTTTTGTATTTTTCAGATTTCTGAAAACTAAAACTTTCAAAGTTTTCARAAACTTCAGATGTCTGTATTCTTCATTCCCAAATCCGATGTTATGAAGAGAAGAATGGAGTGTTTGAAGGAGTGCAGGGTAACTTTTCAGCCTATTTTCAGCTCATTTTCACCCAAATTTGTTTTCCAGGACATCATTATTCTCACGGCCCACAAACTTGAACAATCCTATCACCAGAACGGAAAAGAAACTGAAATTCCATTTTATATAACCCAGTGGCTCGACGAACTCGTCCCAAAAATGGACGCACTTGACATCAAATTGAATAAGGAGATCATTTTGAATGTCTCGGTTAGTTTGGATTATATCTAGAAAACTAAAAAAGCTAAACAAAACTTGTCTACCACAAAAATGTGTAGAATTTAATAAGCTACATTTATGTAGTTGAAAATTTTTTGTAGCTTTTTTGGTATTTGAGATATGCGCCTTTAAAGTTGGCGCGCGCAAAGAAGCTGCGACGTGAGCGCGCGCGCCTTGATCTCAAAAAAAGCGCAGATCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>464 193 163 75 28 26 26 9 9 7</canonical_bands>
                <polymorphic_bands>464 193 163 75 35 28 26 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATTTTTGGTGCATCTATGTTT</pcr_primer_p1>
		<pcr_primer_p2>AGAATAATGATGTCCTGGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTATTTTTGGTGCATCTATGTTTAGAAGTCGAGAATTGGAAGGTTCCGATTTTCAAAGTTTTTGTATTTTTCAGATTTCTGAAAACTAAAACTTTCAAAGTTTTCAGAAACTTCAGATGTCTGTATTCTTCATTCCCAAATCCGATGTTATGAAGAGAAGAATGGAGTGTTTGAAGGAGTGCAGGGTAACTTTTCAGCCTATTTTCAGCTCATTTTCACCCAAATTTGTTTTCCAGGACATCATTATTCT</canonical_amplicon>
		<polymorphic_amplicon>TTATTTTTGGTGCATCTATGTTTAGAAGTCGAGAATTGGAAGGTTCCGATTTTCAAAGTTTTTGTATTTTTCAGATTTCTGAAAACTAAAACTTTCAAAGTTTTCARAAACTTCAGATGTCTGTATTCTTCATTCCCAAATCCGATGTTATGAAGAGAAGAATGGAGTGTTTGAAGGAGTGCAGGGTAACTTTTCAGCCTATTTTCAGCTCATTTTCACCCAAATTTGTTTTCCAGGACATCATTATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6449</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>2838</contig_pos>
        <strand>+</strand>
        <context>AAAGAAATCC[A/C]AGAAAATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACACATTTATAACTTTTCCCATTCTGGAAATCACCTGACGAAAGAAATCC</left_flank>
        <right_flank>AGAAAATTTTGGAACAATCGCCGTAACGTTTTTCATTTTTACATCTTGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAATAAAATGTCGACGATAGAGGAGGAATGGATCTCTTAGTTTTTTTTTCTGATTTTCACCCTCTATCACAATTTTCTAATTGTAATTCCCCCTCCCCTACTCTTTGAAGAAACCAAAACTTTTCATTTATCCCTTTTCTAATGAATATGTATTAACATTTTAAAACTGCTTTTTTTGTATATCAATTTCGCAAAAAGATACGGCTTATTATGTAATAGGAATTTGAAAAAAAGCTAATTTCAAAGTCTTTTTGAAACTGACACAATTTTCCGAGTTTTATATTTCCTGTTCAACGAGATCCCTCACGAAACAATTCTGGAAAAATAAAAGCGCCTTCTTTAATTCAGGAGTCTTAGAAAATAGAAAAGCCATTCGAAGGTAATTTTTGACAATATGGGGACAACCCCTGTTAAATCTGTTTTTCGGTAACAAAACACAACAATACAACACATTTATAACTTTTCCCATTCTGGAAATCACCTGACGAAAGAAATCCCAGAAAATTTTGGAACAATCGCCGTAACGTTTTTCATTTTTACATCTTGTGTTCAAAATTTACTGGTAAAAATTCTGCTCCGCACATCCCTGAAACATCACGACTGCTGTAAACCAAACAATCGTGACACTCTGCGTTTGTGTTCTTCTGCGAAAAATCGATCATTCGTTTCTATTGATCTTAAAATCAATAGGTTCTATCCTTCCCACCTGGTTCTGTATTCCTCCTCGTCGTCTTTAGAACACTCATATTCTTTTCATTATCCTTTTTTTGTGTTACTCAAAATTTCAAATATCTCTTTTTTGTTGATTTTCTCTTTCTTATCGAAGTCTTCGAATGTATGTTTTGTATTGATTTTATTGCAAATCGTTTCATTTTCTATGTTGCTGGTCCATTTCTAAAACATTTTTCGTTAATTTCGATCCTCTCAAAGTTCGGCTCAATTTCGTTTTTTTTCAGAACAATTTCCCCTAAAAATGTTGTCTCCAACATTATTTCAAC</canonical>
            <polymorphic>TTGAATAAAATGTCGACGATAGAGGAGGAATGGATCTCTTAGTTTTTTTTTCTGATTTTCACCCTCTATCACAATTTTCTAATTGTAATTCCCCCTCCCCTACTCTTTGAAGAAACCAAAACTTTTCATTTATCCCTTTTCTAATGAATATGTATTAACATTTTAAAACTGCTTTTTTTGTATATCAATTTCGCAAAAAGATACGGCTTATTATGTAATAGGAATTTGAAAAAAAGCTAATTTCAAAGTCTTTTTGAAACTGACACAATTTTCCGAGTTTTATATTTCCTGTTCAACGAGATCCCTCACGAAACAATTCTGGAAAAATAAAAGCGCCTTCTTTAATTCAGGAGTCTTAGAAAATAGAAAAGCCATTCGAAGGTAATTTTTGACAATATGGGGACAACCCCTGTTAAATCTGTTTTTCGGTAACAAAACACAACAATACAACACATTTATAACTTTTCCCATTCTGGAAATCACCTGACGAAAGAAATCCMAGAAAATTTTGGAACAATCGCCGTAACGTTTTTCATTTTTACATCTTGTGTTCAAAATTTACTGGTAAAAATTCTGCTCCGCACATCCCTGAAACATCACGACTGCTGTAAACCAAACAATCGTGACACTCTGCGTTTGTGTTCTTCTGCGAAAAATCGATCATTCGTTTCTATTGATCTTAAAATCAATAGGTTCTATCCTTCCCACCTGGTTCTGTATTCCTCCTCGTCGTCTTTAGAACACTCATATTCTTTTCATTATCCTTTTTTTGTGTTACTCAAAATTTCAAATATCTCTTTTTTGTTGATTTTCTCTTTCTTATCGAAGTCTTCGAATGTATGTTTTGTATTGATTTTATTGCAAATCGTTTCATTTTCTATGTTGCTGGTCCATTTCTAAAACATTTTTCGTTAATTTCGATCCTCTCAAAGTTCGGCTCAATTTCGTTTTTTTTCAGAACAATTTCCCCTAAAAATGTTGTCTCCAACATTATTTCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACAATTCTGGAAAAATAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAACACAAGATGTAAAAATGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAACAATTCTGGAAAAATAAAAGCGCCTTCTTTAATTCAGGAGTCTTAGAAAATAGAAAAGCCATTCGAAGGTAATTTTTGACAATATGGGGACAACCCCTGTTAAATCTGTTTTTCGGTAACAAAACACAACAATACAACACATTTATAACTTTTCCCATTCTGGAAATCACCTGACGAAAGAAATCCCAGAAAATTTTGGAACAATCGCCGTAACGTTTTTCATTTTTACATCTTGTGTTCAA</canonical_amplicon>
		<polymorphic_amplicon>GAAACAATTCTGGAAAAATAAAAGCGCCTTCTTTAATTCAGGAGTCTTAGAAAATAGAAAAGCCATTCGAAGGTAATTTTTGACAATATGGGGACAACCCCTGTTAAATCTGTTTTTCGGTAACAAAACACAACAATACAACACATTTATAACTTTTCCCATTCTGGAAATCACCTGACGAAAGAAATCCMAGAAAATTTTGGAACAATCGCCGTAACGTTTTTCATTTTTACATCTTGTGTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6450</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>2943</contig_pos>
        <strand>+</strand>
        <context>CATCACGACT[A/G]CTGTAAACCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTTACTGGTAAAAATTCTGCTCCGCACATCCCTGAAACATCACGACT</left_flank>
        <right_flank>CTGTAAACCAAACAATCGTGACACTCTGCGTTTGTGTTCTTCTGCGAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAAGAAACCAAAACTTTTCATTTATCCCTTTTCTAATGAATATGTATTAACATTTTAAAACTGCTTTTTTTGTATATCAATTTCGCAAAAAGATACGGCTTATTATGTAATAGGAATTTGAAAAAAAGCTAATTTCAAAGTCTTTTTGAAACTGACACAATTTTCCGAGTTTTATATTTCCTGTTCAACGAGATCCCTCACGAAACAATTCTGGAAAAATAAAAGCGCCTTCTTTAATTCAGGAGTCTTAGAAAATAGAAAAGCCATTCGAAGGTAATTTTTGACAATATGGGGACAACCCCTGTTAAATCTGTTTTTCGGTAACAAAACACAACAATACAACACATTTATAACTTTTCCCATTCTGGAAATCACCTGACGAAAGAAATCCCAGAAAATTTTGGAACAATCGCCGTAACGTTTTTCATTTTTACATCTTGTGTTCAAAATTTACTGGTAAAAATTCTGCTCCGCACATCCCTGAAACATCACGACTGCTGTAAACCAAACAATCGTGACACTCTGCGTTTGTGTTCTTCTGCGAAAAATCGATCATTCGTTTCTATTGATCTTAAAATCAATAGGTTCTATCCTTCCCACCTGGTTCTGTATTCCTCCTCGTCGTCTTTAGAACACTCATATTCTTTTCATTATCCTTTTTTTGTGTTACTCAAAATTTCAAATATCTCTTTTTTGTTGATTTTCTCTTTCTTATCGAAGTCTTCGAATGTATGTTTTGTATTGATTTTATTGCAAATCGTTTCATTTTCTATGTTGCTGGTCCATTTCTAAAACATTTTTCGTTAATTTCGATCCTCTCAAAGTTCGGCTCAATTTCGTTTTTTTTCAGAACAATTTCCCCTAAAAATGTTGTCTCCAACATTATTTCAACTTGCCGACAAGTCAGCAGCTCAAAACATTCATTATGGTAATTACCCCTAATTCACCAATTATCCTATTTACTTCCAATTTTCAGAGAAAATTCCACTTGAGTTTA</canonical>
            <polymorphic>TTTGAAGAAACCAAAACTTTTCATTTATCCCTTTTCTAATGAATATGTATTAACATTTTAAAACTGCTTTTTTTGTATATCAATTTCGCAAAAAGATACGGCTTATTATGTAATAGGAATTTGAAAAAAAGCTAATTTCAAAGTCTTTTTGAAACTGACACAATTTTCCGAGTTTTATATTTCCTGTTCAACGAGATCCCTCACGAAACAATTCTGGAAAAATAAAAGCGCCTTCTTTAATTCAGGAGTCTTAGAAAATAGAAAAGCCATTCGAAGGTAATTTTTGACAATATGGGGACAACCCCTGTTAAATCTGTTTTTCGGTAACAAAACACAACAATACAACACATTTATAACTTTTCCCATTCTGGAAATCACCTGACGAAAGAAATCCCAGAAAATTTTGGAACAATCGCCGTAACGTTTTTCATTTTTACATCTTGTGTTCAAAATTTACTGGTAAAAATTCTGCTCCGCACATCCCTGAAACATCACGACTRCTGTAAACCAAACAATCGTGACACTCTGCGTTTGTGTTCTTCTGCGAAAAATCGATCATTCGTTTCTATTGATCTTAAAATCAATAGGTTCTATCCTTCCCACCTGGTTCTGTATTCCTCCTCGTCGTCTTTAGAACACTCATATTCTTTTCATTATCCTTTTTTTGTGTTACTCAAAATTTCAAATATCTCTTTTTTGTTGATTTTCTCTTTCTTATCGAAGTCTTCGAATGTATGTTTTGTATTGATTTTATTGCAAATCGTTTCATTTTCTATGTTGCTGGTCCATTTCTAAAACATTTTTCGTTAATTTCGATCCTCTCAAAGTTCGGCTCAATTTCGTTTTTTTTCAGAACAATTTCCCCTAAAAATGTTGTCTCCAACATTATTTCAACTTGCCGACAAGTCAGCAGCTCAAAACATTCATTATGGTAATTACCCCTAATTCACCAATTATCCTATTTACTTCCAATTTTCAGAGAAAATTCCACTTGAGTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAACACAACAATACAACACAT</pcr_primer_p1>
		<pcr_primer_p2>TTTAAGATCAATAGAAACGAATGA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAAAACACAACAATACAACACATTTATAACTTTTCCCATTCTGGAAATCACCTGACGAAAGAAATCCCAGAAAATTTTGGAACAATCGCCGTAACGTTTTTCATTTTTACATCTTGTGTTCAAAATTTACTGGTAAAAATTCTGCTCCGCACATCCCTGAAACATCACGACTGCTGTAAACCAAACAATCGTGACACTCTGCGTTTGTGTTCTTCTGCGAAAAATCGATCATTCGTTTCTATTGATCTTAAA</canonical_amplicon>
		<polymorphic_amplicon>CAAAACACAACAATACAACACATTTATAACTTTTCCCATTCTGGAAATCACCTGACGAAAGAAATCCCAGAAAATTTTGGAACAATCGCCGTAACGTTTTTCATTTTTACATCTTGTGTTCAAAATTTACTGGTAAAAATTCTGCTCCGCACATCCCTGAAACATCACGACTRCTGTAAACCAAACAATCGTGACACTCTGCGTTTGTGTTCTTCTGCGAAAAATCGATCATTCGTTTCTATTGATCTTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6451</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>2988</contig_pos>
        <strand>+</strand>
        <context>TGTTCTTCTG[C/G]GAAAAATCGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGACTGCTGTAAACCAAACAATCGTGACACTCTGCGTTTGTGTTCTTCTG</left_flank>
        <right_flank>GAAAAATCGATCATTCGTTTCTATTGATCTTAAAATCAATAGGTTCTATC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTATTAACATTTTAAAACTGCTTTTTTTGTATATCAATTTCGCAAAAAGATACGGCTTATTATGTAATAGGAATTTGAAAAAAAGCTAATTTCAAAGTCTTTTTGAAACTGACACAATTTTCCGAGTTTTATATTTCCTGTTCAACGAGATCCCTCACGAAACAATTCTGGAAAAATAAAAGCGCCTTCTTTAATTCAGGAGTCTTAGAAAATAGAAAAGCCATTCGAAGGTAATTTTTGACAATATGGGGACAACCCCTGTTAAATCTGTTTTTCGGTAACAAAACACAACAATACAACACATTTATAACTTTTCCCATTCTGGAAATCACCTGACGAAAGAAATCCCAGAAAATTTTGGAACAATCGCCGTAACGTTTTTCATTTTTACATCTTGTGTTCAAAATTTACTGGTAAAAATTCTGCTCCGCACATCCCTGAAACATCACGACTGCTGTAAACCAAACAATCGTGACACTCTGCGTTTGTGTTCTTCTGCGAAAAATCGATCATTCGTTTCTATTGATCTTAAAATCAATAGGTTCTATCCTTCCCACCTGGTTCTGTATTCCTCCTCGTCGTCTTTAGAACACTCATATTCTTTTCATTATCCTTTTTTTGTGTTACTCAAAATTTCAAATATCTCTTTTTTGTTGATTTTCTCTTTCTTATCGAAGTCTTCGAATGTATGTTTTGTATTGATTTTATTGCAAATCGTTTCATTTTCTATGTTGCTGGTCCATTTCTAAAACATTTTTCGTTAATTTCGATCCTCTCAAAGTTCGGCTCAATTTCGTTTTTTTTCAGAACAATTTCCCCTAAAAATGTTGTCTCCAACATTATTTCAACTTGCCGACAAGTCAGCAGCTCAAAACATTCATTATGGTAATTACCCCTAATTCACCAATTATCCTATTTACTTCCAATTTTCAGAGAAAATTCCACTTGAGTTTATTTTAGATTCAAAAGCCAGCAATGAAGTAGTGAGACAGCTTTTAA</canonical>
            <polymorphic>TGTATTAACATTTTAAAACTGCTTTTTTTGTATATCAATTTCGCAAAAAGATACGGCTTATTATGTAATAGGAATTTGAAAAAAAGCTAATTTCAAAGTCTTTTTGAAACTGACACAATTTTCCGAGTTTTATATTTCCTGTTCAACGAGATCCCTCACGAAACAATTCTGGAAAAATAAAAGCGCCTTCTTTAATTCAGGAGTCTTAGAAAATAGAAAAGCCATTCGAAGGTAATTTTTGACAATATGGGGACAACCCCTGTTAAATCTGTTTTTCGGTAACAAAACACAACAATACAACACATTTATAACTTTTCCCATTCTGGAAATCACCTGACGAAAGAAATCCCAGAAAATTTTGGAACAATCGCCGTAACGTTTTTCATTTTTACATCTTGTGTTCAAAATTTACTGGTAAAAATTCTGCTCCGCACATCCCTGAAACATCACGACTGCTGTAAACCAAACAATCGTGACACTCTGCGTTTGTGTTCTTCTGSGAAAAATCGATCATTCGTTTCTATTGATCTTAAAATCAATAGGTTCTATCCTTCCCACCTGGTTCTGTATTCCTCCTCGTCGTCTTTAGAACACTCATATTCTTTTCATTATCCTTTTTTTGTGTTACTCAAAATTTCAAATATCTCTTTTTTGTTGATTTTCTCTTTCTTATCGAAGTCTTCGAATGTATGTTTTGTATTGATTTTATTGCAAATCGTTTCATTTTCTATGTTGCTGGTCCATTTCTAAAACATTTTTCGTTAATTTCGATCCTCTCAAAGTTCGGCTCAATTTCGTTTTTTTTCAGAACAATTTCCCCTAAAAATGTTGTCTCCAACATTATTTCAACTTGCCGACAAGTCAGCAGCTCAAAACATTCATTATGGTAATTACCCCTAATTCACCAATTATCCTATTTACTTCCAATTTTCAGAGAAAATTCCACTTGAGTTTATTTTAGATTCAAAAGCCAGCAATGAAGTAGTGAGACAGCTTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTATAACTTTTCCCATTCTG</pcr_primer_p1>
		<pcr_primer_p2>GGAAGGATAGAACCTATTGATTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CATTTATAACTTTTCCCATTCTGGAAATCACCTGACGAAAGAAATCCCAGAAAATTTTGGAACAATCGCCGTAACGTTTTTCATTTTTACATCTTGTGTTCAAAATTTACTGGTAAAAATTCTGCTCCGCACATCCCTGAAACATCACGACTGCTGTAAACCAAACAATCGTGACACTCTGCGTTTGTGTTCTTCTGCGAAAAATCGATCATTCGTTTCTATTGATCTTAAAATCAATAGGTTCTATCCTTCC</canonical_amplicon>
		<polymorphic_amplicon>CATTTATAACTTTTCCCATTCTGGAAATCACCTGACGAAAGAAATCCCAGAAAATTTTGGAACAATCGCCGTAACGTTTTTCATTTTTACATCTTGTGTTCAAAATTTACTGGTAAAAATTCTGCTCCGCACATCCCTGAAACATCACGACTGCTGTAAACCAAACAATCGTGACACTCTGCGTTTGTGTTCTTCTGSGAAAAATCGATCATTCGTTTCTATTGATCTTAAAATCAATAGGTTCTATCCTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6452</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>3209</contig_pos>
        <strand>+</strand>
        <context>GCAAATCGTT[C/T]CATTTTCTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATCGAAGTCTTCGAATGTATGTTTTGTATTGATTTTATTGCAAATCGTT</left_flank>
        <right_flank>CATTTTCTATGTTGCTGGTCCATTTCTAAAACATTTTTCGTTAATTTCGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATTCGAAGGTAATTTTTGACAATATGGGGACAACCCCTGTTAAATCTGTTTTTCGGTAACAAAACACAACAATACAACACATTTATAACTTTTCCCATTCTGGAAATCACCTGACGAAAGAAATCCCAGAAAATTTTGGAACAATCGCCGTAACGTTTTTCATTTTTACATCTTGTGTTCAAAATTTACTGGTAAAAATTCTGCTCCGCACATCCCTGAAACATCACGACTGCTGTAAACCAAACAATCGTGACACTCTGCGTTTGTGTTCTTCTGCGAAAAATCGATCATTCGTTTCTATTGATCTTAAAATCAATAGGTTCTATCCTTCCCACCTGGTTCTGTATTCCTCCTCGTCGTCTTTAGAACACTCATATTCTTTTCATTATCCTTTTTTTGTGTTACTCAAAATTTCAAATATCTCTTTTTTGTTGATTTTCTCTTTCTTATCGAAGTCTTCGAATGTATGTTTTGTATTGATTTTATTGCAAATCGTTTCATTTTCTATGTTGCTGGTCCATTTCTAAAACATTTTTCGTTAATTTCGATCCTCTCAAAGTTCGGCTCAATTTCGTTTTTTTTCAGAACAATTTCCCCTAAAAATGTTGTCTCCAACATTATTTCAACTTGCCGACAAGTCAGCAGCTCAAAACATTCATTATGGTAATTACCCCTAATTCACCAATTATCCTATTTACTTCCAATTTTCAGAGAAAATTCCACTTGAGTTTATTTTAGATTCAAAAGCCAGCAATGAAGTAGTGAGACAGCTTTTAAAATTGGATCCGAAAAACATTAAAAAATTGGAAACCTGTAAAAAACAGCTATCAAGACTGACAGAACTGGATTTAAAGAAGTGTAAAATTGATGTGGAAGGAATTTTGAATTTGAAAAACTTCAAATTGAATTCTCTGAATTTTGGATACTTGTACCATTTGAAGACGGAATTTCCGGATCCATCAAGTAAGAAAAGTTTCTGGAAATATCTCAAAAGTTTC</canonical>
            <polymorphic>CCATTCGAAGGTAATTTTTGACAATATGGGGACAACCCCTGTTAAATCTGTTTTTCGGTAACAAAACACAACAATACAACACATTTATAACTTTTCCCATTCTGGAAATCACCTGACGAAAGAAATCCCAGAAAATTTTGGAACAATCGCCGTAACGTTTTTCATTTTTACATCTTGTGTTCAAAATTTACTGGTAAAAATTCTGCTCCGCACATCCCTGAAACATCACGACTGCTGTAAACCAAACAATCGTGACACTCTGCGTTTGTGTTCTTCTGCGAAAAATCGATCATTCGTTTCTATTGATCTTAAAATCAATAGGTTCTATCCTTCCCACCTGGTTCTGTATTCCTCCTCGTCGTCTTTAGAACACTCATATTCTTTTCATTATCCTTTTTTTGTGTTACTCAAAATTTCAAATATCTCTTTTTTGTTGATTTTCTCTTTCTTATCGAAGTCTTCGAATGTATGTTTTGTATTGATTTTATTGCAAATCGTTYCATTTTCTATGTTGCTGGTCCATTTCTAAAACATTTTTCGTTAATTTCGATCCTCTCAAAGTTCGGCTCAATTTCGTTTTTTTTCAGAACAATTTCCCCTAAAAATGTTGTCTCCAACATTATTTCAACTTGCCGACAAGTCAGCAGCTCAAAACATTCATTATGGTAATTACCCCTAATTCACCAATTATCCTATTTACTTCCAATTTTCAGAGAAAATTCCACTTGAGTTTATTTTAGATTCAAAAGCCAGCAATGAAGTAGTGAGACAGCTTTTAAAATTGGATCCGAAAAACATTAAAAAATTGGAAACCTGTAAAAAACAGCTATCAAGACTGACAGAACTGGATTTAAAGAAGTGTAAAATTGATGTGGAAGGAATTTTGAATTTGAAAAACTTCAAATTGAATTCTCTGAATTTTGGATACTTGTACCATTTGAAGACGGAATTTCCGGATCCATCAAGTAAGAAAAGTTTCTGGAAATATCTCAAAAGTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTTGATTTTCTCTTTCTT</pcr_primer_p1>
		<pcr_primer_p2>AATTACCATAATGAATGTTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTTGATTTTCTCTTTCTTATCGAAGTCTTCGAATGTATGTTTTGTATTGATTTTATTGCAAATCGTTTCATTTTCTATGTTGCTGGTCCATTTCTAAAACATTTTTCGTTAATTTCGATCCTCTCAAAGTTCGGCTCAATTTCGTTTTTTTTCAGAACAATTTCCCCTAAAAATGTTGTCTCCAACATTATTTCAACTTGCCGACAAGTCAGCAGCTCAAAACATTCATTATGGTAATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTTGATTTTCTCTTTCTTATCGAAGTCTTCGAATGTATGTTTTGTATTGATTTTATTGCAAATCGTTYCATTTTCTATGTTGCTGGTCCATTTCTAAAACATTTTTCGTTAATTTCGATCCTCTCAAAGTTCGGCTCAATTTCGTTTTTTTTCAGAACAATTTCCCCTAAAAATGTTGTCTCCAACATTATTTCAACTTGCCGACAAGTCAGCAGCTCAAAACATTCATTATGGTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6453</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>3345</contig_pos>
        <strand>+</strand>
        <context>CAACTTGCCG[A/C]CAAGTCAGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAACAATTTCCCCTAAAAATGTTGTCTCCAACATTATTTCAACTTGCCG</left_flank>
        <right_flank>CAAGTCAGCAGCTCAAAACATTCATTATGGTAATTACCCCTAATTCACCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGAACAATCGCCGTAACGTTTTTCATTTTTACATCTTGTGTTCAAAATTTACTGGTAAAAATTCTGCTCCGCACATCCCTGAAACATCACGACTGCTGTAAACCAAACAATCGTGACACTCTGCGTTTGTGTTCTTCTGCGAAAAATCGATCATTCGTTTCTATTGATCTTAAAATCAATAGGTTCTATCCTTCCCACCTGGTTCTGTATTCCTCCTCGTCGTCTTTAGAACACTCATATTCTTTTCATTATCCTTTTTTTGTGTTACTCAAAATTTCAAATATCTCTTTTTTGTTGATTTTCTCTTTCTTATCGAAGTCTTCGAATGTATGTTTTGTATTGATTTTATTGCAAATCGTTTCATTTTCTATGTTGCTGGTCCATTTCTAAAACATTTTTCGTTAATTTCGATCCTCTCAAAGTTCGGCTCAATTTCGTTTTTTTTCAGAACAATTTCCCCTAAAAATGTTGTCTCCAACATTATTTCAACTTGCCGACAAGTCAGCAGCTCAAAACATTCATTATGGTAATTACCCCTAATTCACCAATTATCCTATTTACTTCCAATTTTCAGAGAAAATTCCACTTGAGTTTATTTTAGATTCAAAAGCCAGCAATGAAGTAGTGAGACAGCTTTTAAAATTGGATCCGAAAAACATTAAAAAATTGGAAACCTGTAAAAAACAGCTATCAAGACTGACAGAACTGGATTTAAAGAAGTGTAAAATTGATGTGGAAGGAATTTTGAATTTGAAAAACTTCAAATTGAATTCTCTGAATTTTGGATACTTGTACCATTTGAAGACGGAATTTCCGGATCCATCAAGTAAGAAAAGTTTCTGGAAATATCTCAAAAGTTTCAATTTTCAGACTCATCTGGAATTGACATTGTGAGTTTATTGAAAAGAGCAGTGAATACACAAGAAATGATGATCCATTTGGGATTTTCTGGCGAGGAGGACAAGCGGTATATGATTGGTTGGGAGGAAAAGGTAAT</canonical>
            <polymorphic>TTTGGAACAATCGCCGTAACGTTTTTCATTTTTACATCTTGTGTTCAAAATTTACTGGTAAAAATTCTGCTCCGCACATCCCTGAAACATCACGACTGCTGTAAACCAAACAATCGTGACACTCTGCGTTTGTGTTCTTCTGCGAAAAATCGATCATTCGTTTCTATTGATCTTAAAATCAATAGGTTCTATCCTTCCCACCTGGTTCTGTATTCCTCCTCGTCGTCTTTAGAACACTCATATTCTTTTCATTATCCTTTTTTTGTGTTACTCAAAATTTCAAATATCTCTTTTTTGTTGATTTTCTCTTTCTTATCGAAGTCTTCGAATGTATGTTTTGTATTGATTTTATTGCAAATCGTTTCATTTTCTATGTTGCTGGTCCATTTCTAAAACATTTTTCGTTAATTTCGATCCTCTCAAAGTTCGGCTCAATTTCGTTTTTTTTCAGAACAATTTCCCCTAAAAATGTTGTCTCCAACATTATTTCAACTTGCCGMCAAGTCAGCAGCTCAAAACATTCATTATGGTAATTACCCCTAATTCACCAATTATCCTATTTACTTCCAATTTTCAGAGAAAATTCCACTTGAGTTTATTTTAGATTCAAAAGCCAGCAATGAAGTAGTGAGACAGCTTTTAAAATTGGATCCGAAAAACATTAAAAAATTGGAAACCTGTAAAAAACAGCTATCAAGACTGACAGAACTGGATTTAAAGAAGTGTAAAATTGATGTGGAAGGAATTTTGAATTTGAAAAACTTCAAATTGAATTCTCTGAATTTTGGATACTTGTACCATTTGAAGACGGAATTTCCGGATCCATCAAGTAAGAAAAGTTTCTGGAAATATCTCAAAAGTTTCAATTTTCAGACTCATCTGGAATTGACATTGTGAGTTTATTGAAAAGAGCAGTGAATACACAAGAAATGATGATCCATTTGGGATTTTCTGGCGAGGAGGACAAGCGGTATATGATTGGTTGGGAGGAAAAGGTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCTTCGAATGTATGTTTTGT</pcr_primer_p1>
		<pcr_primer_p2>GGAAGTAAATAGGATAATTGGTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGTCTTCGAATGTATGTTTTGTATTGATTTTATTGCAAATCGTTTCATTTTCTATGTTGCTGGTCCATTTCTAAAACATTTTTCGTTAATTTCGATCCTCTCAAAGTTCGGCTCAATTTCGTTTTTTTTCAGAACAATTTCCCCTAAAAATGTTGTCTCCAACATTATTTCAACTTGCCGACAAGTCAGCAGCTCAAAACATTCATTATGGTAATTACCCCTAATTCACCAATTATCCTATTTACTTCC</canonical_amplicon>
		<polymorphic_amplicon>AAGTCTTCGAATGTATGTTTTGTATTGATTTTATTGCAAATCGTTTCATTTTCTATGTTGCTGGTCCATTTCTAAAACATTTTTCGTTAATTTCGATCCTCTCAAAGTTCGGCTCAATTTCGTTTTTTTTCAGAACAATTTCCCCTAAAAATGTTGTCTCCAACATTATTTCAACTTGCCGMCAAGTCAGCAGCTCAAAACATTCATTATGGTAATTACCCCTAATTCACCAATTATCCTATTTACTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6454</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>4606</contig_pos>
        <strand>+</strand>
        <context>TGAATTGAAA[A/G]AATTTGTTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGTGTTTCTGGATTGTTCAATGACATGGGTCAAGGATTATGAATTGAAA</left_flank>
        <right_flank>AATTTGTTAAGCGTCATGAGTGTTATGAGTTTCTGAAGGAGTTTTTGACT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCAAAACTTCTTCCATCTCTTCAAAGCATCAAAATCACTTTCAGTACATTCTTCCACCAACGCAAACTCTCAAATCTCTGTAGTTCGTTTCCCAATCTTCGAATCTTGGATATTTCTTTTGCGAGAGGTCTAACAACTATGGAAGGAATCAAAAATCTCAAACACCTGCAAAAATTGGTGATGCGGGGGATAGAACTCGAAGACATTTATGGATACAAAGAGTTGTCCGATTTGAAGAATTTAAGGGTTTTAGATGTTTCGGATTGTGACGAGTGAGTTTATTAGTTTCGAGAATTAGAGAGAGGGGGAGGCCATTTTTTTTCCAAATCCTAACTTGCTATATCCCGGACCGGTCCGGGTATGCCCAAAACGAAAAACTGTACTATTTTCAGTGATTCCTATCGAGTGATTAGAAGTCTATTGACTTCTGATGTCCGAATGAAAAATTTGGTGTTTCTGGATTGTTCAATGACATGGGTCAAGGATTATGAATTGAAAGAATTTGTTAAGCGTCATGAGTGTTATGAGTTTCTGAAGGAGTTTTTGACTTTTTTGGCTATATTTAAATGTTATCCGTATTTTGCATGCTTTTCTACAATCTGAAGAGGTTTTCTCTTTTTTTTTCGGAAAATTTTTTTTGAGAAAATCGCCTTGGGGTACCCCCTTGGAATTTTTTCAATTTTCGAAAAAAACAATTTAATGTGCTAGAATTAGTTCAAAACAAAGAGAATCAATAAAAATGTTGTTTCACTAGATTCGATAACCTATGTTCATTTCTACAAGTCAGATACAGCCACCGGAAAGAACGAAGAAAAAATTCAAAAAAGTTTAGCAGCTCGAGGGAGTTGAACCAGAGAATACCCGCTTCATATTCTTAATCACTAACCATTCGACCACGCTTCCACATTCTTTCAACGCTTTAAAATTTAACTACGCGAGGAAGAAAAATGAGATTGAAAATCCACGTCATTTTTGGAAACTTTCGACCCAGTTTTCTCG</canonical>
            <polymorphic>CTCAAAACTTCTTCCATCTCTTCAAAGCATCAAAATCACTTTCAGTACATTCTTCCACCAACGCAAACTCTCAAATCTCTGTAGTTCGTTTCCCAATCTTCGAATCTTGGATATTTCTTTTGCGAGAGGTCTAACAACTATGGAAGGAATCAAAAATCTCAAACACCTGCAAAAATTGGTGATGCGGGGGATAGAACTCGAAGACATTTATGGATACAAAGAGTTGTCCGATTTGAAGAATTTAAGGGTTTTAGATGTTTCGGATTGTGACGAGTGAGTTTATTAGTTTCGAGAATTAGAGAGAGGGGGAGGCCATTTTTTTTCCAAATCCTAACTTGCTATATCCCGGACCGGTCCGGGTATGCCCAAAACGAAAAACTGTACTATTTTCAGTGATTCCTATCGAGTGATTAGAAGTCTATTGACTTCTGATGTCCGAATGAAAAATTTGGTGTTTCTGGATTGTTCAATGACATGGGTCAAGGATTATGAATTGAAARAATTTGTTAAGCGTCATGAGTGTTATGAGTTTCTGAAGGAGTTTTTGACTTTTTTGGCTATATTTAAATGTTATCCGTATTTTGCATGCTTTTCTACAATCTGAAGAGGTTTTCTCTTTTTTTTTCGGAAAATTTTTTTTGAGAAAATCGCCTTGGGGTACCCCCTTGGAATTTTTTCAATTTTCGAAAAAAACAATTTAATGTGCTAGAATTAGTTCAAAACAAAGAGAATCAATAAAAATGTTGTTTCACTAGATTCGATAACCTATGTTCATTTCTACAAGTCAGATACAGCCACCGGAAAGAACGAAGAAAAAATTCAAAAAAGTTTAGCAGCTCGAGGGAGTTGAACCAGAGAATACCCGCTTCATATTCTTAATCACTAACCATTCGACCACGCTTCCACATTCTTTCAACGCTTTAAAATTTAACTACGCGAGGAAGAAAAATGAGATTGAAAATCCACGTCATTTTTGGAAACTTTCGACCCAGTTTTCTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>238 207 147 130 108 76 55 39</canonical_bands>
                <polymorphic_bands>238 207 185 147 108 76 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGTGTTTCTGGATTGTTC</pcr_primer_p1>
		<pcr_primer_p2>CTCGAGCTGCTAAACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>394</pcr_amplicon_size>
		<canonical_amplicon>TTGGTGTTTCTGGATTGTTCAATGACATGGGTCAAGGATTATGAATTGAAAGAATTTGTTAAGCGTCATGAGTGTTATGAGTTTCTGAAGGAGTTTTTGACTTTTTTGGCTATATTTAAATGTTATCCGTATTTTGCATGCTTTTCTACAATCTGAAGAGGTTTTCTCTTTTTTTTTCGGAAAATTTTTTTTGAGAAAATCGCCTTGGGGTACCCCCTTGGAATTTTTTCAATTTTCGAAAAAAACAATTTAATGTGCTAGAATTAGTTCAAAACAAAGAGAATCAATAAAAATGTTGTTTCACTAGATTCGATAACCTATGTTCATTTCTACAAGTCAGATACAGCCACCGGAAAGAACGAAGAAAAAATTCAAAAAAGTTTAGCAGCTCGAG</canonical_amplicon>
		<polymorphic_amplicon>TTGGTGTTTCTGGATTGTTCAATGACATGGGTCAAGGATTATGAATTGAAARAATTTGTTAAGCGTCATGAGTGTTATGAGTTTCTGAAGGAGTTTTTGACTTTTTTGGCTATATTTAAATGTTATCCGTATTTTGCATGCTTTTCTACAATCTGAAGAGGTTTTCTCTTTTTTTTTCGGAAAATTTTTTTTGAGAAAATCGCCTTGGGGTACCCCCTTGGAATTTTTTCAATTTTCGAAAAAAACAATTTAATGTGCTAGAATTAGTTCAAAACAAAGAGAATCAATAAAAATGTTGTTTCACTAGATTCGATAACCTATGTTCATTTCTACAAGTCAGATACAGCCACCGGAAAGAACGAAGAAAAAATTCAAAAAAGTTTAGCAGCTCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6455</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>27662</contig_pos>
        <strand>+</strand>
        <context>TGGTGTTGAA[A/G]GCAGCAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGTTTTTTTGATTGTTTCTGCAAGAAAAGGAGAATATTTTGGTGTTGAA</left_flank>
        <right_flank>GCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTCCCGGAATTTTCGTCGGAGACTCACTTTTTGACATTTTCCGCATGCTCGGCATTGAGCCCGCTCACAACCAACATCACATTCTTCACTTCCGTCCGCATCAACCACGACAAAACGAAATTGATGGCTGGCACATTGCAAATCGGGAATGTTCCCTGAAAATTGAAAAAAAATTGATAAAATATGGATTTTATTAAATTTTTTGTATAGAAATATTGAAGATTTTTTTGTTTTTGAGCCGGTTTAGGCTTATTTATCCAATAAATTGATTTTTTTTTAAATTTAAAAATCAATTTTCAACCCACAAAGCACGGATAAGATTCTTGAATTGGTGCAAATCTTTGATCAAAAGCATCCAGAATAACCACTGCCGTCAATGGTGGCTCCTCTTTTTTGACGCCTTTCTTAAAGGCCGACGATGGTGGTGTCATGGTGGACTTTTCGGTTGTTTTTTTGATTGTTTCTGCAAGAAAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTCCAAAATTCCCTCCTGTTCAATGGAGTGCGTTTGCTTTTCTTAGTCATTTTC</canonical>
            <polymorphic>ATTTTTCCCGGAATTTTCGTCGGAGACTCACTTTTTGACATTTTCCGCATGCTCGGCATTGAGCCCGCTCACAACCAACATCACATTCTTCACTTCCGTCCGCATCAACCACGACAAAACGAAATTGATGGCTGGCACATTGCAAATCGGGAATGTTCCCTGAAAATTGAAAAAAAATTGATAAAATATGGATTTTATTAAATTTTTTGTATAGAAATATTGAAGATTTTTTTGTTTTTGAGCCGGTTTAGGCTTATTTATCCAATAAATTGATTTTTTTTTAAATTTAAAAATCAATTTTCAACCCACAAAGCACGGATAAGATTCTTGAATTGGTGCAAATCTTTGATCAAAAGCATCCAGAATAACCACTGCCGTCAATGGTGGCTCCTCTTTTTTGACGCCTTTCTTAAAGGCCGACGATGGTGGTGTCATGGTGGACTTTTCGGTTGTTTTTTTGATTGTTTCTGCAAGAAAAGGAGAATATTTTGGTGTTGAARGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTCCAAAATTCCCTCCTGTTCAATGGAGTGCGTTTGCTTTTCTTAGTCATTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCAAAAGCATCCAGAATAAC</pcr_primer_p1>
		<pcr_primer_p2>ACTCTGGGATCATCAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GATCAAAAGCATCCAGAATAACCACTGCCGTCAATGGTGGCTCCTCTTTTTTGACGCCTTTCTTAAAGGCCGACGATGGTGGTGTCATGGTGGACTTTTCGGTTGTTTTTTTGATTGTTTCTGCAAGAAAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGT</canonical_amplicon>
		<polymorphic_amplicon>GATCAAAAGCATCCAGAATAACCACTGCCGTCAATGGTGGCTCCTCTTTTTTGACGCCTTTCTTAAAGGCCGACGATGGTGGTGTCATGGTGGACTTTTCGGTTGTTTTTTTGATTGTTTCTGCAAGAAAAGGAGAATATTTTGGTGTTGAARGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6456</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>27697</contig_pos>
        <strand>+</strand>
        <context>GAATTTTGAA[A/G]GAATTCGKGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAA</left_flank>
        <right_flank>GAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACATTTTCCGCATGCTCGGCATTGAGCCCGCTCACAACCAACATCACATTCTTCACTTCCGTCCGCATCAACCACGACAAAACGAAATTGATGGCTGGCACATTGCAAATCGGGAATGTTCCCTGAAAATTGAAAAAAAATTGATAAAATATGGATTTTATTAAATTTTTTGTATAGAAATATTGAAGATTTTTTTGTTTTTGAGCCGGTTTAGGCTTATTTATCCAATAAATTGATTTTTTTTTAAATTTAAAAATCAATTTTCAACCCACAAAGCACGGATAAGATTCTTGAATTGGTGCAAATCTTTGATCAAAAGCATCCAGAATAACCACTGCCGTCAATGGTGGCTCCTCTTTTTTGACGCCTTTCTTAAAGGCCGACGATGGTGGTGTCATGGTGGACTTTTCGGTTGTTTTTTTGATTGTTTCTGCAAGAAAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTCCAAAATTCCCTCCTGTTCAATGGAGTGCGTTTGCTTTTCTTAGTCATTTTCCACCCTTTTTGCAGTTTTTGGCTGAAATTGAATGA</canonical>
            <polymorphic>TGACATTTTCCGCATGCTCGGCATTGAGCCCGCTCACAACCAACATCACATTCTTCACTTCCGTCCGCATCAACCACGACAAAACGAAATTGATGGCTGGCACATTGCAAATCGGGAATGTTCCCTGAAAATTGAAAAAAAATTGATAAAATATGGATTTTATTAAATTTTTTGTATAGAAATATTGAAGATTTTTTTGTTTTTGAGCCGGTTTAGGCTTATTTATCCAATAAATTGATTTTTTTTTAAATTTAAAAATCAATTTTCAACCCACAAAGCACGGATAAGATTCTTGAATTGGTGCAAATCTTTGATCAAAAGCATCCAGAATAACCACTGCCGTCAATGGTGGCTCCTCTTTTTTGACGCCTTTCTTAAAGGCCGACGATGGTGGTGTCATGGTGGACTTTTCGGTTGTTTTTTTGATTGTTTCTGCAAGAAAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAARGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTCCAAAATTCCCTCCTGTTCAATGGAGTGCGTTTGCTTTTCTTAGTCATTTTCCACCCTTTTTGCAGTTTTTGGCTGAAATTGAATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGGAGAATATTTTGGTGTTG</pcr_primer_p1>
		<pcr_primer_p2>CAGGTTTTATGCACTGAATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTG</canonical_amplicon>
		<polymorphic_amplicon>AAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAARGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6457</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>27705</contig_pos>
        <strand>+</strand>
        <context>AARGAATTCG[G/T]GTTATGAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCG</left_flank>
        <right_flank>GTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCGCATGCTCGGCATTGAGCCCGCTCACAACCAACATCACATTCTTCACTTCCGTCCGCATCAACCACGACAAAACGAAATTGATGGCTGGCACATTGCAAATCGGGAATGTTCCCTGAAAATTGAAAAAAAATTGATAAAATATGGATTTTATTAAATTTTTTGTATAGAAATATTGAAGATTTTTTTGTTTTTGAGCCGGTTTAGGCTTATTTATCCAATAAATTGATTTTTTTTTAAATTTAAAAATCAATTTTCAACCCACAAAGCACGGATAAGATTCTTGAATTGGTGCAAATCTTTGATCAAAAGCATCCAGAATAACCACTGCCGTCAATGGTGGCTCCTCTTTTTTGACGCCTTTCTTAAAGGCCGACGATGGTGGTGTCATGGTGGACTTTTCGGTTGTTTTTTTGATTGTTTCTGCAAGAAAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTCCAAAATTCCCTCCTGTTCAATGGAGTGCGTTTGCTTTTCTTAGTCATTTTCCACCCTTTTTGCAGTTTTTGGCTGAAATTGAATGAAAATTCGG</canonical>
            <polymorphic>TCCGCATGCTCGGCATTGAGCCCGCTCACAACCAACATCACATTCTTCACTTCCGTCCGCATCAACCACGACAAAACGAAATTGATGGCTGGCACATTGCAAATCGGGAATGTTCCCTGAAAATTGAAAAAAAATTGATAAAATATGGATTTTATTAAATTTTTTGTATAGAAATATTGAAGATTTTTTTGTTTTTGAGCCGGTTTAGGCTTATTTATCCAATAAATTGATTTTTTTTTAAATTTAAAAATCAATTTTCAACCCACAAAGCACGGATAAGATTCTTGAATTGGTGCAAATCTTTGATCAAAAGCATCCAGAATAACCACTGCCGTCAATGGTGGCTCCTCTTTTTTGACGCCTTTCTTAAAGGCCGACGATGGTGGTGTCATGGTGGACTTTTCGGTTGTTTTTTTGATTGTTTCTGCAAGAAAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGKGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTCCAAAATTCCCTCCTGTTCAATGGAGTGCGTTTGCTTTTCTTAGTCATTTTCCACCCTTTTTGCAGTTTTTGGCTGAAATTGAATGAAAATTCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>227 171 57 55 50 45 42 41 40 33 32 28 26 26 23 19 15 13 12 9 8 7 7 6 5 3</canonical_bands>
                <polymorphic_bands>227 171 95 57 55 42 41 40 33 32 28 26 26 23 19 15 13 12 9 8 7 7 6 5 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGGAGAATATTTTGGTGTTG</pcr_primer_p1>
		<pcr_primer_p2>CAGGTTTTATGCACTGAATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTG</canonical_amplicon>
		<polymorphic_amplicon>AAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGKGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6458</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>27757</contig_pos>
        <strand>+</strand>
        <context>GAGTGCGGTG[A/G]AGCGCACTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTG</left_flank>
        <right_flank>AGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGTCCGCATCAACCACGACAAAACGAAATTGATGGCTGGCACATTGCAAATCGGGAATGTTCCCTGAAAATTGAAAAAAAATTGATAAAATATGGATTTTATTAAATTTTTTGTATAGAAATATTGAAGATTTTTTTGTTTTTGAGCCGGTTTAGGCTTATTTATCCAATAAATTGATTTTTTTTTAAATTTAAAAATCAATTTTCAACCCACAAAGCACGGATAAGATTCTTGAATTGGTGCAAATCTTTGATCAAAAGCATCCAGAATAACCACTGCCGTCAATGGTGGCTCCTCTTTTTTGACGCCTTTCTTAAAGGCCGACGATGGTGGTGTCATGGTGGACTTTTCGGTTGTTTTTTTGATTGTTTCTGCAAGAAAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTCCAAAATTCCCTCCTGTTCAATGGAGTGCGTTTGCTTTTCTTAGTCATTTTCCACCCTTTTTGCAGTTTTTGGCTGAAATTGAATGAAAATTCGGGTTTTTTGTTTTTCAAGTAGCTTTAAAGCATCAGATTTTTCTCATGGAGCAA</canonical>
            <polymorphic>CCGTCCGCATCAACCACGACAAAACGAAATTGATGGCTGGCACATTGCAAATCGGGAATGTTCCCTGAAAATTGAAAAAAAATTGATAAAATATGGATTTTATTAAATTTTTTGTATAGAAATATTGAAGATTTTTTTGTTTTTGAGCCGGTTTAGGCTTATTTATCCAATAAATTGATTTTTTTTTAAATTTAAAAATCAATTTTCAACCCACAAAGCACGGATAAGATTCTTGAATTGGTGCAAATCTTTGATCAAAAGCATCCAGAATAACCACTGCCGTCAATGGTGGCTCCTCTTTTTTGACGCCTTTCTTAAAGGCCGACGATGGTGGTGTCATGGTGGACTTTTCGGTTGTTTTTTTGATTGTTTCTGCAAGAAAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGRAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTCCAAAATTCCCTCCTGTTCAATGGAGTGCGTTTGCTTTTCTTAGTCATTTTCCACCCTTTTTGCAGTTTTTGGCTGAAATTGAATGAAAATTCGGGTTTTTTGTTTTTCAAGTAGCTTTAAAGCATCAGATTTTTCTCATGGAGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGGAGAATATTTTGGTGTTG</pcr_primer_p1>
		<pcr_primer_p2>CAGGTTTTATGCACTGAATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTG</canonical_amplicon>
		<polymorphic_amplicon>AAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGRAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6459</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>27802</contig_pos>
        <strand>+</strand>
        <context>GAGCGACGGA[A/G]AAAAGGAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGA</left_flank>
        <right_flank>AAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCAAATCGGGAATGTTCCCTGAAAATTGAAAAAAAATTGATAAAATATGGATTTTATTAAATTTTTTGTATAGAAATATTGAAGATTTTTTTGTTTTTGAGCCGGTTTAGGCTTATTTATCCAATAAATTGATTTTTTTTTAAATTTAAAAATCAATTTTCAACCCACAAAGCACGGATAAGATTCTTGAATTGGTGCAAATCTTTGATCAAAAGCATCCAGAATAACCACTGCCGTCAATGGTGGCTCCTCTTTTTTGACGCCTTTCTTAAAGGCCGACGATGGTGGTGTCATGGTGGACTTTTCGGTTGTTTTTTTGATTGTTTCTGCAAGAAAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTCCAAAATTCCCTCCTGTTCAATGGAGTGCGTTTGCTTTTCTTAGTCATTTTCCACCCTTTTTGCAGTTTTTGGCTGAAATTGAATGAAAATTCGGGTTTTTTGTTTTTCAAGTAGCTTTAAAGCATCAGATTTTTCTCATGGAGCAAAAAATCGGTCCCTATAGTATTGCGTAAGTGAAGAGAAATCGAAAA</canonical>
            <polymorphic>TGCAAATCGGGAATGTTCCCTGAAAATTGAAAAAAAATTGATAAAATATGGATTTTATTAAATTTTTTGTATAGAAATATTGAAGATTTTTTTGTTTTTGAGCCGGTTTAGGCTTATTTATCCAATAAATTGATTTTTTTTTAAATTTAAAAATCAATTTTCAACCCACAAAGCACGGATAAGATTCTTGAATTGGTGCAAATCTTTGATCAAAAGCATCCAGAATAACCACTGCCGTCAATGGTGGCTCCTCTTTTTTGACGCCTTTCTTAAAGGCCGACGATGGTGGTGTCATGGTGGACTTTTCGGTTGTTTTTTTGATTGTTTCTGCAAGAAAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGARAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTCCAAAATTCCCTCCTGTTCAATGGAGTGCGTTTGCTTTTCTTAGTCATTTTCCACCCTTTTTGCAGTTTTTGGCTGAAATTGAATGAAAATTCGGGTTTTTTGTTTTTCAAGTAGCTTTAAAGCATCAGATTTTTCTCATGGAGCAAAAAATCGGTCCCTATAGTATTGCGTAAGTGAAGAGAAATCGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGGAGAATATTTTGGTGTTG</pcr_primer_p1>
		<pcr_primer_p2>CAGGTTTTATGCACTGAATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTG</canonical_amplicon>
		<polymorphic_amplicon>AAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGARAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6460</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>27851</contig_pos>
        <strand></strand>
        <context>TTAATTTGTT[T/C]YTGAAAAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTT</left_flank>
        <right_flank>TTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATTTTATTAAATTTTTTGTATAGAAATATTGAAGATTTTTTTGTTTTTGAGCCGGTTTAGGCTTATTTATCCAATAAATTGATTTTTTTTTAAATTTAAAAATCAATTTTCAACCCACAAAGCACGGATAAGATTCTTGAATTGGTGCAAATCTTTGATCAAAAGCATCCAGAATAACCACTGCCGTCAATGGTGGCTCCTCTTTTTTGACGCCTTTCTTAAAGGCCGACGATGGTGGTGTCATGGTGGACTTTTCGGTTGTTTTTTTGATTGTTTCTGCAAGAAAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTCCAAAATTCCCTCCTGTTCAATGGAGTGCGTTTGCTTTTCTTAGTCATTTTCCACCCTTTTTGCAGTTTTTGGCTGAAATTGAATGAAAATTCGGGTTTTTTGTTTTTCAAGTAGCTTTAAAGCATCAGATTTTTCTCATGGAGCAAAAAATCGGTCCCTATAGTATTGCGTAAGTGAAGAGAAATCGAAAAAAAATTTCATAAAAACCAATTTTTTTCAGATTGGTCTCAGATTTTTTCT</canonical>
            <polymorphic>GGATTTTATTAAATTTTTTGTATAGAAATATTGAAGATTTTTTTGTTTTTGAGCCGGTTTAGGCTTATTTATCCAATAAATTGATTTTTTTTTAAATTTAAAAATCAATTTTCAACCCACAAAGCACGGATAAGATTCTTGAATTGGTGCAAATCTTTGATCAAAAGCATCCAGAATAACCACTGCCGTCAATGGTGGCTCCTCTTTTTTGACGCCTTTCTTAAAGGCCGACGATGGTGGTGTCATGGTGGACTTTTCGGTTGTTTTTTTGATTGTTTCTGCAAGAAAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTYTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTCCAAAATTCCCTCCTGTTCAATGGAGTGCGTTTGCTTTTCTTAGTCATTTTCCACCCTTTTTGCAGTTTTTGGCTGAAATTGAATGAAAATTCGGGTTTTTTGTTTTTCAAGTAGCTTTAAAGCATCAGATTTTTCTCATGGAGCAAAAAATCGGTCCCTATAGTATTGCGTAAGTGAAGAGAAATCGAAAAAAAATTTCATAAAAACCAATTTTTTTCAGATTGGTCTCAGATTTTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTGATGATCCCAGAGT</pcr_primer_p1>
		<pcr_primer_p2>CATTCTTCGCAAAAATTATCA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTYTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6461</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>27885</contig_pos>
        <strand></strand>
        <context>AAAACCTGAA[A/C]MATAACCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAA</left_flank>
        <right_flank>AATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATTTTTTTGTTTTTGAGCCGGTTTAGGCTTATTTATCCAATAAATTGATTTTTTTTTAAATTTAAAAATCAATTTTCAACCCACAAAGCACGGATAAGATTCTTGAATTGGTGCAAATCTTTGATCAAAAGCATCCAGAATAACCACTGCCGTCAATGGTGGCTCCTCTTTTTTGACGCCTTTCTTAAAGGCCGACGATGGTGGTGTCATGGTGGACTTTTCGGTTGTTTTTTTGATTGTTTCTGCAAGAAAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTCCAAAATTCCCTCCTGTTCAATGGAGTGCGTTTGCTTTTCTTAGTCATTTTCCACCCTTTTTGCAGTTTTTGGCTGAAATTGAATGAAAATTCGGGTTTTTTGTTTTTCAAGTAGCTTTAAAGCATCAGATTTTTCTCATGGAGCAAAAAATCGGTCCCTATAGTATTGCGTAAGTGAAGAGAAATCGAAAAAAAATTTCATAAAAACCAATTTTTTTCAGATTGGTCTCAGATTTTTTCTGTCCAAATGCGGGTGGTGTGGAGACGCATATCTA</canonical>
            <polymorphic>AGATTTTTTTGTTTTTGAGCCGGTTTAGGCTTATTTATCCAATAAATTGATTTTTTTTTAAATTTAAAAATCAATTTTCAACCCACAAAGCACGGATAAGATTCTTGAATTGGTGCAAATCTTTGATCAAAAGCATCCAGAATAACCACTGCCGTCAATGGTGGCTCCTCTTTTTTGACGCCTTTCTTAAAGGCCGACGATGGTGGTGTCATGGTGGACTTTTCGGTTGTTTTTTTGATTGTTTCTGCAAGAAAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAMAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTCCAAAATTCCCTCCTGTTCAATGGAGTGCGTTTGCTTTTCTTAGTCATTTTCCACCCTTTTTGCAGTTTTTGGCTGAAATTGAATGAAAATTCGGGTTTTTTGTTTTTCAAGTAGCTTTAAAGCATCAGATTTTTCTCATGGAGCAAAAAATCGGTCCCTATAGTATTGCGTAAGTGAAGAGAAATCGAAAAAAAATTTCATAAAAACCAATTTTTTTCAGATTGGTCTCAGATTTTTTCTGTCCAAATGCGGGTGGTGTGGAGACGCATATCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAAAAATGAGTGTTTAATTTGT</pcr_primer_p1>
		<pcr_primer_p2>GATGATTTTGTCAGCGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATC</canonical_amplicon>
		<polymorphic_amplicon>AAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAMAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6462</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>27901</contig_pos>
        <strand>+</strand>
        <context>CCAAAATCGG[C/T]TTCGAAACCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGG</left_flank>
        <right_flank>TTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCCGGTTTAGGCTTATTTATCCAATAAATTGATTTTTTTTTAAATTTAAAAATCAATTTTCAACCCACAAAGCACGGATAAGATTCTTGAATTGGTGCAAATCTTTGATCAAAAGCATCCAGAATAACCACTGCCGTCAATGGTGGCTCCTCTTTTTTGACGCCTTTCTTAAAGGCCGACGATGGTGGTGTCATGGTGGACTTTTCGGTTGTTTTTTTGATTGTTTCTGCAAGAAAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTCCAAAATTCCCTCCTGTTCAATGGAGTGCGTTTGCTTTTCTTAGTCATTTTCCACCCTTTTTGCAGTTTTTGGCTGAAATTGAATGAAAATTCGGGTTTTTTGTTTTTCAAGTAGCTTTAAAGCATCAGATTTTTCTCATGGAGCAAAAAATCGGTCCCTATAGTATTGCGTAAGTGAAGAGAAATCGAAAAAAAATTTCATAAAAACCAATTTTTTTCAGATTGGTCTCAGATTTTTTCTGTCCAAATGCGGGTGGTGTGGAGACGCATATCTATTTTCTGGCACAATGT</canonical>
            <polymorphic>GAGCCGGTTTAGGCTTATTTATCCAATAAATTGATTTTTTTTTAAATTTAAAAATCAATTTTCAACCCACAAAGCACGGATAAGATTCTTGAATTGGTGCAAATCTTTGATCAAAAGCATCCAGAATAACCACTGCCGTCAATGGTGGCTCCTCTTTTTTGACGCCTTTCTTAAAGGCCGACGATGGTGGTGTCATGGTGGACTTTTCGGTTGTTTTTTTGATTGTTTCTGCAAGAAAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGYTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTCCAAAATTCCCTCCTGTTCAATGGAGTGCGTTTGCTTTTCTTAGTCATTTTCCACCCTTTTTGCAGTTTTTGGCTGAAATTGAATGAAAATTCGGGTTTTTTGTTTTTCAAGTAGCTTTAAAGCATCAGATTTTTCTCATGGAGCAAAAAATCGGTCCCTATAGTATTGCGTAAGTGAAGAGAAATCGAAAAAAAATTTCATAAAAACCAATTTTTTTCAGATTGGTCTCAGATTTTTTCTGTCCAAATGCGGGTGGTGTGGAGACGCATATCTATTTTCTGGCACAATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAAAAATGAGTGTTTAATTTGT</pcr_primer_p1>
		<pcr_primer_p2>GATGATTTTGTCAGCGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATC</canonical_amplicon>
		<polymorphic_amplicon>AAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGYTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6463</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>27921</contig_pos>
        <strand>+</strand>
        <context>ACCTTTCTGT[A/G]TTTCTAGTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGT</left_flank>
        <right_flank>TTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCAATAAATTGATTTTTTTTTAAATTTAAAAATCAATTTTCAACCCACAAAGCACGGATAAGATTCTTGAATTGGTGCAAATCTTTGATCAAAAGCATCCAGAATAACCACTGCCGTCAATGGTGGCTCCTCTTTTTTGACGCCTTTCTTAAAGGCCGACGATGGTGGTGTCATGGTGGACTTTTCGGTTGTTTTTTTGATTGTTTCTGCAAGAAAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTCCAAAATTCCCTCCTGTTCAATGGAGTGCGTTTGCTTTTCTTAGTCATTTTCCACCCTTTTTGCAGTTTTTGGCTGAAATTGAATGAAAATTCGGGTTTTTTGTTTTTCAAGTAGCTTTAAAGCATCAGATTTTTCTCATGGAGCAAAAAATCGGTCCCTATAGTATTGCGTAAGTGAAGAGAAATCGAAAAAAAATTTCATAAAAACCAATTTTTTTCAGATTGGTCTCAGATTTTTTCTGTCCAAATGCGGGTGGTGTGGAGACGCATATCTATTTTCTGGCACAATGTTTGATAAATTTGGGACATCG</canonical>
            <polymorphic>ATCCAATAAATTGATTTTTTTTTAAATTTAAAAATCAATTTTCAACCCACAAAGCACGGATAAGATTCTTGAATTGGTGCAAATCTTTGATCAAAAGCATCCAGAATAACCACTGCCGTCAATGGTGGCTCCTCTTTTTTGACGCCTTTCTTAAAGGCCGACGATGGTGGTGTCATGGTGGACTTTTCGGTTGTTTTTTTGATTGTTTCTGCAAGAAAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTRTTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTCCAAAATTCCCTCCTGTTCAATGGAGTGCGTTTGCTTTTCTTAGTCATTTTCCACCCTTTTTGCAGTTTTTGGCTGAAATTGAATGAAAATTCGGGTTTTTTGTTTTTCAAGTAGCTTTAAAGCATCAGATTTTTCTCATGGAGCAAAAAATCGGTCCCTATAGTATTGCGTAAGTGAAGAGAAATCGAAAAAAAATTTCATAAAAACCAATTTTTTTCAGATTGGTCTCAGATTTTTTCTGTCCAAATGCGGGTGGTGTGGAGACGCATATCTATTTTCTGGCACAATGTTTGATAAATTTGGGACATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAATTCAGTGCATAAAACCTG</pcr_primer_p1>
		<pcr_primer_p2>GAGGGAACAGCTAATATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTC</canonical_amplicon>
		<polymorphic_amplicon>TAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTRTTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6464</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>27941</contig_pos>
        <strand>+</strand>
        <context>CTAATAAAGC[A/G]AAAATGATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGC</left_flank>
        <right_flank>AAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAAATTTAAAAATCAATTTTCAACCCACAAAGCACGGATAAGATTCTTGAATTGGTGCAAATCTTTGATCAAAAGCATCCAGAATAACCACTGCCGTCAATGGTGGCTCCTCTTTTTTGACGCCTTTCTTAAAGGCCGACGATGGTGGTGTCATGGTGGACTTTTCGGTTGTTTTTTTGATTGTTTCTGCAAGAAAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTCCAAAATTCCCTCCTGTTCAATGGAGTGCGTTTGCTTTTCTTAGTCATTTTCCACCCTTTTTGCAGTTTTTGGCTGAAATTGAATGAAAATTCGGGTTTTTTGTTTTTCAAGTAGCTTTAAAGCATCAGATTTTTCTCATGGAGCAAAAAATCGGTCCCTATAGTATTGCGTAAGTGAAGAGAAATCGAAAAAAAATTTCATAAAAACCAATTTTTTTCAGATTGGTCTCAGATTTTTTCTGTCCAAATGCGGGTGGTGTGGAGACGCATATCTATTTTCTGGCACAATGTTTGATAAATTTGGGACATCGAGTAGTGGTTGTAACTCATG</canonical>
            <polymorphic>TTTAAATTTAAAAATCAATTTTCAACCCACAAAGCACGGATAAGATTCTTGAATTGGTGCAAATCTTTGATCAAAAGCATCCAGAATAACCACTGCCGTCAATGGTGGCTCCTCTTTTTTGACGCCTTTCTTAAAGGCCGACGATGGTGGTGTCATGGTGGACTTTTCGGTTGTTTTTTTGATTGTTTCTGCAAGAAAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCRAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTCCAAAATTCCCTCCTGTTCAATGGAGTGCGTTTGCTTTTCTTAGTCATTTTCCACCCTTTTTGCAGTTTTTGGCTGAAATTGAATGAAAATTCGGGTTTTTTGTTTTTCAAGTAGCTTTAAAGCATCAGATTTTTCTCATGGAGCAAAAAATCGGTCCCTATAGTATTGCGTAAGTGAAGAGAAATCGAAAAAAAATTTCATAAAAACCAATTTTTTTCAGATTGGTCTCAGATTTTTTCTGTCCAAATGCGGGTGGTGTGGAGACGCATATCTATTTTCTGGCACAATGTTTGATAAATTTGGGACATCGAGTAGTGGTTGTAACTCATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAATTCAGTGCATAAAACCTG</pcr_primer_p1>
		<pcr_primer_p2>GAGGGAACAGCTAATATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTC</canonical_amplicon>
		<polymorphic_amplicon>TAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCRAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6465</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>27975</contig_pos>
        <strand>+</strand>
        <context>TGTACCTAGA[C/T]TTAAAARTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGA</left_flank>
        <right_flank>TTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACGGATAAGATTCTTGAATTGGTGCAAATCTTTGATCAAAAGCATCCAGAATAACCACTGCCGTCAATGGTGGCTCCTCTTTTTTGACGCCTTTCTTAAAGGCCGACGATGGTGGTGTCATGGTGGACTTTTCGGTTGTTTTTTTGATTGTTTCTGCAAGAAAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTCCAAAATTCCCTCCTGTTCAATGGAGTGCGTTTGCTTTTCTTAGTCATTTTCCACCCTTTTTGCAGTTTTTGGCTGAAATTGAATGAAAATTCGGGTTTTTTGTTTTTCAAGTAGCTTTAAAGCATCAGATTTTTCTCATGGAGCAAAAAATCGGTCCCTATAGTATTGCGTAAGTGAAGAGAAATCGAAAAAAAATTTCATAAAAACCAATTTTTTTCAGATTGGTCTCAGATTTTTTCTGTCCAAATGCGGGTGGTGTGGAGACGCATATCTATTTTCTGGCACAATGTTTGATAAATTTGGGACATCGAGTAGTGGTTGTAACTCATGGATATGGTGATCGCAAGGGTGTTAGGTACCTTTC</canonical>
            <polymorphic>CACGGATAAGATTCTTGAATTGGTGCAAATCTTTGATCAAAAGCATCCAGAATAACCACTGCCGTCAATGGTGGCTCCTCTTTTTTGACGCCTTTCTTAAAGGCCGACGATGGTGGTGTCATGGTGGACTTTTCGGTTGTTTTTTTGATTGTTTCTGCAAGAAAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGAYTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTCCAAAATTCCCTCCTGTTCAATGGAGTGCGTTTGCTTTTCTTAGTCATTTTCCACCCTTTTTGCAGTTTTTGGCTGAAATTGAATGAAAATTCGGGTTTTTTGTTTTTCAAGTAGCTTTAAAGCATCAGATTTTTCTCATGGAGCAAAAAATCGGTCCCTATAGTATTGCGTAAGTGAAGAGAAATCGAAAAAAAATTTCATAAAAACCAATTTTTTTCAGATTGGTCTCAGATTTTTTCTGTCCAAATGCGGGTGGTGTGGAGACGCATATCTATTTTCTGGCACAATGTTTGATAAATTTGGGACATCGAGTAGTGGTTGTAACTCATGGATATGGTGATCGCAAGGGTGTTAGGTACCTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNNNNGTC</site>
                <isoschizomers>
                    <enzyme>AasI</enzyme>
                    <enzyme>DrdI</enzyme>
                    <enzyme>DseDI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAATTCAGTGCATAAAACCTG</pcr_primer_p1>
		<pcr_primer_p2>GAGGGAACAGCTAATATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTC</canonical_amplicon>
		<polymorphic_amplicon>TAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGAYTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6466</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>27982</contig_pos>
        <strand>+</strand>
        <context>AGAYTTAAAA[A/G]TCTATTCAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAA</left_flank>
        <right_flank>TCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGATTCTTGAATTGGTGCAAATCTTTGATCAAAAGCATCCAGAATAACCACTGCCGTCAATGGTGGCTCCTCTTTTTTGACGCCTTTCTTAAAGGCCGACGATGGTGGTGTCATGGTGGACTTTTCGGTTGTTTTTTTGATTGTTTCTGCAAGAAAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTCCAAAATTCCCTCCTGTTCAATGGAGTGCGTTTGCTTTTCTTAGTCATTTTCCACCCTTTTTGCAGTTTTTGGCTGAAATTGAATGAAAATTCGGGTTTTTTGTTTTTCAAGTAGCTTTAAAGCATCAGATTTTTCTCATGGAGCAAAAAATCGGTCCCTATAGTATTGCGTAAGTGAAGAGAAATCGAAAAAAAATTTCATAAAAACCAATTTTTTTCAGATTGGTCTCAGATTTTTTCTGTCCAAATGCGGGTGGTGTGGAGACGCATATCTATTTTCTGGCACAATGTTTGATAAATTTGGGACATCGAGTAGTGGTTGTAACTCATGGATATGGTGATCGCAAGGGTGTTAGGTACCTTTCCAATGGT</canonical>
            <polymorphic>AAGATTCTTGAATTGGTGCAAATCTTTGATCAAAAGCATCCAGAATAACCACTGCCGTCAATGGTGGCTCCTCTTTTTTGACGCCTTTCTTAAAGGCCGACGATGGTGGTGTCATGGTGGACTTTTCGGTTGTTTTTTTGATTGTTTCTGCAAGAAAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAARTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTCCAAAATTCCCTCCTGTTCAATGGAGTGCGTTTGCTTTTCTTAGTCATTTTCCACCCTTTTTGCAGTTTTTGGCTGAAATTGAATGAAAATTCGGGTTTTTTGTTTTTCAAGTAGCTTTAAAGCATCAGATTTTTCTCATGGAGCAAAAAATCGGTCCCTATAGTATTGCGTAAGTGAAGAGAAATCGAAAAAAAATTTCATAAAAACCAATTTTTTTCAGATTGGTCTCAGATTTTTTCTGTCCAAATGCGGGTGGTGTGGAGACGCATATCTATTTTCTGGCACAATGTTTGATAAATTTGGGACATCGAGTAGTGGTTGTAACTCATGGATATGGTGATCGCAAGGGTGTTAGGTACCTTTCCAATGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNNNNGTC</site>
                <isoschizomers>
                    <enzyme>AasI</enzyme>
                    <enzyme>DrdI</enzyme>
                    <enzyme>DseDI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAATTCAGTGCATAAAACCTG</pcr_primer_p1>
		<pcr_primer_p2>GAGGGAACAGCTAATATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTC</canonical_amplicon>
		<polymorphic_amplicon>TAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAARTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6469</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>30851</contig_pos>
        <strand></strand>
        <context>AAACCCCRAA[A/C]TCGGCCATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGAGCTTTTTGAACGACATTCCCTTGTCAGTGGCCTAGAAAACCCCAAA</left_flank>
        <right_flank>TCGGCCATTCCAAAAACCTAAAAGTCCAATTTCCAGACATTCTCCGCACT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTAAAAATTTCTGGTCGGAGTCCCCCTTTAAAAATTCGTCAAAAAAAGTGTGTGGTGATTTTTTTCAAAAAAAAATTTTTTTTGAAATTATTCGAAAATCATTGCAAATCATTGAAAATGTTCAAGAAGTGTCTCCCATTTTCCAAACCTTTGGAAAACGACTTTTTAAGTTTGAAAAATAAGAAAAAAATAAAAGAACGAGGACCCGAACCTGCATGTGTGCATTCGTGGTCCTTCCTGCTAGCCACTAGGCTACCGAAACATGTTTTACTCTAGCATGCAACGCAGTGAAGAAAGGGGAGGAGAAGGGAGACGATGAGACTGGTGGAAATGCTATAATTTCATATCGATTTTTCTCGAGTTTCAGCGATTTTTGCAGGTAGAGACTACTATTACGTAAAAGCCCATACTCGATTCTATAAATGAGCCAATTTAGAGAAAATTCTGAAGAGCTTTTTGAACGACATTCCCTTGTCAGTGGCCTAGAAAACCCCAAAATCGGCCATTCCAAAAACCTAAAAGTCCAATTTCCAGACATTCTCCGCACTGGCCCACGAATCTTTAATGATCGTGGTCTGATGGGTCTCCGAACCGTTTTTCACCNNGTCATTCCCTTTTCGGATTCGCCGACGCGTCTGCAATCCTCACGAACACGCTAGTACTACAGTACTCCCTTATCAACGTCGATCAAATAATCTGCGTCTCGTATACGTCGAAAGAGAATACTGTACTACGTGGAAAGCTGGACCCAAATAAGGTTTCAACGATTCCGAATGCTATTGAGACATCGCTGTTCACTCCGGACACTGATCAGTTTTTCAAAAATCCAACGACAATTATCTTTTTGGGACGACTGGTTTATCGGAAAGGAGCCGATTTGTTATGTGAAATTGTTCCGAAAGTTAGCACTGGGATGTGTGAAAATATATAAAAAAATTCTGAAAATTGTATTTTGAAATGTCTGGAATTTCCTGAATTTTCTGAAGAGTCAAAAAATT</canonical>
            <polymorphic>CATTAAAAATTTCTGGTCGGAGTCCCCCTTTAAAAATTCGTCAAAAAAAGTGTGTGGTGATTTTTTTCAAAAAAAAATTTTTTTTGAAATTATTCGAAAATCATTGCAAATCATTGAAAATGTTCAAGAAGTGTCTCCCATTTTCCAAACCTTTGGAAAACGACTTTTTAAGTTTGAAAAATAAGAAAAAAATAAAAGAACGAGGACCCGAACCTGCATGTGTGCATTCGTGGTCCTTCCTGCTAGCCACTAGGCTACCGAAACATGTTTTACTCTAGCATGCAACGCAGTGAAGAAAGGGGAGGAGAAGGGAGACGATGAGACTGGTGGAAATGCTATAATTTCATATCGATTTTTCTCGAGTTTCAGCGATTTTTGCAGGTAGAGACTACTATTACGTAAAAGCCCATACTCGATTCTATAAATGAGCCAATTTAGAGAAAATTCTGAAGAGCTTTTTGAACGACATTCCCTTGTCAGTGGCCTAGAAAACCCCAAAMTCGGCCATTCCAAAAACCTAAAAGTCCAATTTCCAGACATTCTCCGCACTGGCCCACGAATCTTTAATGATCGTGGTCTGATGGGTCTCCGAACCGTTTTTCACCNNGTCATTCCCTTTTCGGATTCGCCGACGCGTCTGCAATCCTCACGAACACGCTAGTACTACAGTACTCCCTTATCAACGTCGATCAAATAATCTGCGTCTCGTATACGTCGAAAGAGAATACTGTACTACGTGGAAAGCTGGACCCAAATAAGGTTTCAACGATTCCGAATGCTATTGAGACATCGCTGTTCACTCCGGACACTGATCAGTTTTTCAAAAATCCAACGACAATTATCTTTTTGGGACGACTGGTTTATCGGAAAGGAGCCGATTTGTTATGTGAAATTGTTCCGAAAGTTAGCACTGGGATGTGTGAAAATATATAAAAAAATTCTGAAAATTGTATTTTGAAATGTCTGGAATTTCCTGAATTTTCTGAAGAGTCAAAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAAATTTCTGGTCGGAGTC</pcr_primer_p1>
		<pcr_primer_p2>GTAGTACTAGCGTGTTCGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>664</pcr_amplicon_size>
		<canonical_amplicon>TAAAAATTTCTGGTCGGAGTCCCCCTTTAAAAATTCGTCAAAAAAAGTGTGTGGTGATTTTTTTCAAAAAAAAATTTTTTTTGAAATTATTCGAAAATCATTGCAAATCATTGAAAATGTTCAAGAAGTGTCTCCCATTTTCCAAACCTTTGGAAAACGACTTTTTAAGTTTGAAAAATAAGAAAAAAATAAAAGAACGAGGACCCGAACCTGCATGTGTGCATTCGTGGTCCTTCCTGCTAGCCACTAGGCTACCGAAACATGTTTTACTCTAGCATGCAACGCAGTGAAGAAAGGGGAGGAGAAGGGAGACGATGAGACTGGTGGAAATGCTATAATTTCATATCGATTTTTCTCGAGTTTCAGCGATTTTTGCAGGTAGAGACTACTATTACGTAAAAGCCCATACTCGATTCTATAAATGAGCCAATTTAGAGAAAATTCTGAAGAGCTTTTTGAACGACATTCCCTTGTCAGTGGCCTAGAAAACCCCAAAATCGGCCATTCCAAAAACCTAAAAGTCCAATTTCCAGACATTCTCCGCACTGGCCCACGAATCTTTAATGATCGTGGTCTGATGGGTCTCCGAACCGTTTTTCACCNNGTCATTCCCTTTTCGGATTCGCCGACGCGTCTGCAATCCTCACGAACACGCTAGTACTAC</canonical_amplicon>
		<polymorphic_amplicon>TAAAAATTTCTGGTCGGAGTCCCCCTTTAAAAATTCGTCAAAAAAAGTGTGTGGTGATTTTTTTCAAAAAAAAATTTTTTTTGAAATTATTCGAAAATCATTGCAAATCATTGAAAATGTTCAAGAAGTGTCTCCCATTTTCCAAACCTTTGGAAAACGACTTTTTAAGTTTGAAAAATAAGAAAAAAATAAAAGAACGAGGACCCGAACCTGCATGTGTGCATTCGTGGTCCTTCCTGCTAGCCACTAGGCTACCGAAACATGTTTTACTCTAGCATGCAACGCAGTGAAGAAAGGGGAGGAGAAGGGAGACGATGAGACTGGTGGAAATGCTATAATTTCATATCGATTTTTCTCGAGTTTCAGCGATTTTTGCAGGTAGAGACTACTATTACGTAAAAGCCCATACTCGATTCTATAAATGAGCCAATTTAGAGAAAATTCTGAAGAGCTTTTTGAACGACATTCCCTTGTCAGTGGCCTAGAAAACCCCAAAMTCGGCCATTCCAAAAACCTAAAAGTCCAATTTCCAGACATTCTCCGCACTGGCCCACGAATCTTTAATGATCGTGGTCTGATGGGTCTCCGAACCGTTTTTCACCNNGTCATTCCCTTTTCGGATTCGCCGACGCGTCTGCAATCCTCACGAACACGCTAGTACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6470</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>30848</contig_pos>
        <strand></strand>
        <context>AGAAAACCCC[A/G]AAMTCGGCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGAAGAGCTTTTTGAACGACATTCCCTTGTCAGTGGCCTAGAAAACCCC</left_flank>
        <right_flank>AAATCGGCCATTCCAAAAACCTAAAAGTCCAATTTCCAGACATTCTCCGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCATTAAAAATTTCTGGTCGGAGTCCCCCTTTAAAAATTCGTCAAAAAAAGTGTGTGGTGATTTTTTTCAAAAAAAAATTTTTTTTGAAATTATTCGAAAATCATTGCAAATCATTGAAAATGTTCAAGAAGTGTCTCCCATTTTCCAAACCTTTGGAAAACGACTTTTTAAGTTTGAAAAATAAGAAAAAAATAAAAGAACGAGGACCCGAACCTGCATGTGTGCATTCGTGGTCCTTCCTGCTAGCCACTAGGCTACCGAAACATGTTTTACTCTAGCATGCAACGCAGTGAAGAAAGGGGAGGAGAAGGGAGACGATGAGACTGGTGGAAATGCTATAATTTCATATCGATTTTTCTCGAGTTTCAGCGATTTTTGCAGGTAGAGACTACTATTACGTAAAAGCCCATACTCGATTCTATAAATGAGCCAATTTAGAGAAAATTCTGAAGAGCTTTTTGAACGACATTCCCTTGTCAGTGGCCTAGAAAACCCCAAAATCGGCCATTCCAAAAACCTAAAAGTCCAATTTCCAGACATTCTCCGCACTGGCCCACGAATCTTTAATGATCGTGGTCTGATGGGTCTCCGAACCGTTTTTCACCNNGTCATTCCCTTTTCGGATTCGCCGACGCGTCTGCAATCCTCACGAACACGCTAGTACTACAGTACTCCCTTATCAACGTCGATCAAATAATCTGCGTCTCGTATACGTCGAAAGAGAATACTGTACTACGTGGAAAGCTGGACCCAAATAAGGTTTCAACGATTCCGAATGCTATTGAGACATCGCTGTTCACTCCGGACACTGATCAGTTTTTCAAAAATCCAACGACAATTATCTTTTTGGGACGACTGGTTTATCGGAAAGGAGCCGATTTGTTATGTGAAATTGTTCCGAAAGTTAGCACTGGGATGTGTGAAAATATATAAAAAAATTCTGAAAATTGTATTTTGAAATGTCTGGAATTTCCTGAATTTTCTGAAGAGTCAAAAA</canonical>
            <polymorphic>ATGCATTAAAAATTTCTGGTCGGAGTCCCCCTTTAAAAATTCGTCAAAAAAAGTGTGTGGTGATTTTTTTCAAAAAAAAATTTTTTTTGAAATTATTCGAAAATCATTGCAAATCATTGAAAATGTTCAAGAAGTGTCTCCCATTTTCCAAACCTTTGGAAAACGACTTTTTAAGTTTGAAAAATAAGAAAAAAATAAAAGAACGAGGACCCGAACCTGCATGTGTGCATTCGTGGTCCTTCCTGCTAGCCACTAGGCTACCGAAACATGTTTTACTCTAGCATGCAACGCAGTGAAGAAAGGGGAGGAGAAGGGAGACGATGAGACTGGTGGAAATGCTATAATTTCATATCGATTTTTCTCGAGTTTCAGCGATTTTTGCAGGTAGAGACTACTATTACGTAAAAGCCCATACTCGATTCTATAAATGAGCCAATTTAGAGAAAATTCTGAAGAGCTTTTTGAACGACATTCCCTTGTCAGTGGCCTAGAAAACCCCRAAATCGGCCATTCCAAAAACCTAAAAGTCCAATTTCCAGACATTCTCCGCACTGGCCCACGAATCTTTAATGATCGTGGTCTGATGGGTCTCCGAACCGTTTTTCACCNNGTCATTCCCTTTTCGGATTCGCCGACGCGTCTGCAATCCTCACGAACACGCTAGTACTACAGTACTCCCTTATCAACGTCGATCAAATAATCTGCGTCTCGTATACGTCGAAAGAGAATACTGTACTACGTGGAAAGCTGGACCCAAATAAGGTTTCAACGATTCCGAATGCTATTGAGACATCGCTGTTCACTCCGGACACTGATCAGTTTTTCAAAAATCCAACGACAATTATCTTTTTGGGACGACTGGTTTATCGGAAAGGAGCCGATTTGTTATGTGAAATTGTTCCGAAAGTTAGCACTGGGATGTGTGAAAATATATAAAAAAATTCTGAAAATTGTATTTTGAAATGTCTGGAATTTCCTGAATTTTCTGAAGAGTCAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAAATTTCTGGTCGGAGTC</pcr_primer_p1>
		<pcr_primer_p2>GTAGTACTAGCGTGTTCGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>664</pcr_amplicon_size>
		<canonical_amplicon>TAAAAATTTCTGGTCGGAGTCCCCCTTTAAAAATTCGTCAAAAAAAGTGTGTGGTGATTTTTTTCAAAAAAAAATTTTTTTTGAAATTATTCGAAAATCATTGCAAATCATTGAAAATGTTCAAGAAGTGTCTCCCATTTTCCAAACCTTTGGAAAACGACTTTTTAAGTTTGAAAAATAAGAAAAAAATAAAAGAACGAGGACCCGAACCTGCATGTGTGCATTCGTGGTCCTTCCTGCTAGCCACTAGGCTACCGAAACATGTTTTACTCTAGCATGCAACGCAGTGAAGAAAGGGGAGGAGAAGGGAGACGATGAGACTGGTGGAAATGCTATAATTTCATATCGATTTTTCTCGAGTTTCAGCGATTTTTGCAGGTAGAGACTACTATTACGTAAAAGCCCATACTCGATTCTATAAATGAGCCAATTTAGAGAAAATTCTGAAGAGCTTTTTGAACGACATTCCCTTGTCAGTGGCCTAGAAAACCCCAAAATCGGCCATTCCAAAAACCTAAAAGTCCAATTTCCAGACATTCTCCGCACTGGCCCACGAATCTTTAATGATCGTGGTCTGATGGGTCTCCGAACCGTTTTTCACCNNGTCATTCCCTTTTCGGATTCGCCGACGCGTCTGCAATCCTCACGAACACGCTAGTACTAC</canonical_amplicon>
		<polymorphic_amplicon>TAAAAATTTCTGGTCGGAGTCCCCCTTTAAAAATTCGTCAAAAAAAGTGTGTGGTGATTTTTTTCAAAAAAAAATTTTTTTTGAAATTATTCGAAAATCATTGCAAATCATTGAAAATGTTCAAGAAGTGTCTCCCATTTTCCAAACCTTTGGAAAACGACTTTTTAAGTTTGAAAAATAAGAAAAAAATAAAAGAACGAGGACCCGAACCTGCATGTGTGCATTCGTGGTCCTTCCTGCTAGCCACTAGGCTACCGAAACATGTTTTACTCTAGCATGCAACGCAGTGAAGAAAGGGGAGGAGAAGGGAGACGATGAGACTGGTGGAAATGCTATAATTTCATATCGATTTTTCTCGAGTTTCAGCGATTTTTGCAGGTAGAGACTACTATTACGTAAAAGCCCATACTCGATTCTATAAATGAGCCAATTTAGAGAAAATTCTGAAGAGCTTTTTGAACGACATTCCCTTGTCAGTGGCCTAGAAAACCCCRAAATCGGCCATTCCAAAAACCTAAAAGTCCAATTTCCAGACATTCTCCGCACTGGCCCACGAATCTTTAATGATCGTGGTCTGATGGGTCTCCGAACCGTTTTTCACCNNGTCATTCCCTTTTCGGATTCGCCGACGCGTCTGCAATCCTCACGAACACGCTAGTACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6471</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>106856</contig_pos>
        <strand></strand>
        <context>CAAATATCCC[G/T]CTATCAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAATGTGTTAGGAAGAACTTCAAGAGTGCAAAAAAAAACAAATATCCC</left_flank>
        <right_flank>CTATCAAAAACCTGTTCCCAAGACAAGATTTCTAACTTTTACCTCACATC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGTTGAATGGTCCAGCTGTGAAATTTGCAAATGTTGGAGATATTGTAGTACATAAATGGACTTGTGATAGTGGTAAAGACCTTGAAATTTCGCTCTTTTCGGAAGGAAAAAATTTTCAGACCGCTACGGATTTGTTGTCCATTCTTGTGCGGTTCGAGATGAATCTGGAAAGGATTTTCAGTTTATTGATGAGAGAGGGTAAGTCCATAGAATTCCAATTTTGATTCAATTTTATCTTGGTTCCTGTAGAAGATATCAAAAAGTGGTTAACTAACAATTAGTTGCTGATTTCATGATAAACATTTTGTCAATTGACCTCTTTTAGATATCTTTTACAGGAAGCGAGATAGAAGGGGTCAAAGGGTCGGAGCCCCTGACGCTGTCGGCTCTGCGACAGTGTAGCTCAGCCGGTAAAAGCGCGGAACTAACAGGTCCAAGAAGAGATTTTAAAAATGTGTTAGGAAGAACTTCAAGAGTGCAAAAAAAAACAAATATCCCGCTATCAAAAACCTGTTCCCAAGACAAGATTTCTAACTTTTACCTCACATCTCCGAAGACTTCCAGGCTGCGCCAAAGTGCCTTCAACTTTGAGCCACTTTATCTAGCTTCCTGTAAAAGATATCAAAAAGTGGTTAATAGACAAAATATTGATGATATTATGCTAAACAATTTATCAGTTGACCACTTCTTGATATCTTTTACAGGAAGCGAGATAAATGAGCTCAACGTTGACGACTGATTTTTAATTTTTCTTTGTGATATTTTTGAGACTAAACATTATGTTTAGACTCTTTAGAACTCAAATTTAATCTCCTCAAAATTTGTAATGTTTCTTTTCTTCCAGATGCGTCACAGATTACAGTCTATTCCCCGAAGTCACCTATTCTTCGGATCTGAAATCTGCGTTCACTGCAGTCCGGGCTTTTCGATATGCTGATCAAGTGATGGTCCATTTCTCATGTCAAATTACAACTTGTCAGAAACAAGAGAACGGATGTG</canonical>
            <polymorphic>TCGTTGAATGGTCCAGCTGTGAAATTTGCAAATGTTGGAGATATTGTAGTACATAAATGGACTTGTGATAGTGGTAAAGACCTTGAAATTTCGCTCTTTTCGGAAGGAAAAAATTTTCAGACCGCTACGGATTTGTTGTCCATTCTTGTGCGGTTCGAGATGAATCTGGAAAGGATTTTCAGTTTATTGATGAGAGAGGGTAAGTCCATAGAATTCCAATTTTGATTCAATTTTATCTTGGTTCCTGTAGAAGATATCAAAAAGTGGTTAACTAACAATTAGTTGCTGATTTCATGATAAACATTTTGTCAATTGACCTCTTTTAGATATCTTTTACAGGAAGCGAGATAGAAGGGGTCAAAGGGTCGGAGCCCCTGACGCTGTCGGCTCTGCGACAGTGTAGCTCAGCCGGTAAAAGCGCGGAACTAACAGGTCCAAGAAGAGATTTTAAAAATGTGTTAGGAAGAACTTCAAGAGTGCAAAAAAAAACAAATATCCCKCTATCAAAAACCTGTTCCCAAGACAAGATTTCTAACTTTTACCTCACATCTCCGAAGACTTCCAGGCTGCGCCAAAGTGCCTTCAACTTTGAGCCACTTTATCTAGCTTCCTGTAAAAGATATCAAAAAGTGGTTAATAGACAAAATATTGATGATATTATGCTAAACAATTTATCAGTTGACCACTTCTTGATATCTTTTACAGGAAGCGAGATAAATGAGCTCAACGTTGACGACTGATTTTTAATTTTTCTTTGTGATATTTTTGAGACTAAACATTATGTTTAGACTCTTTAGAACTCAAATTTAATCTCCTCAAAATTTGTAATGTTTCTTTTCTTCCAGATGCGTCACAGATTACAGTCTATTCCCCGAAGTCACCTATTCTTCGGATCTGAAATCTGCGTTCACTGCAGTCCGGGCTTTTCGATATGCTGATCAAGTGATGGTCCATTTCTCATGTCAAATTACAACTTGTCAGAAACAAGAGAACGGATGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>502 376 122</canonical_bands>
                <polymorphic_bands>878 122</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTAACAGGTCCAAGAAGAGAT</pcr_primer_p1>
		<pcr_primer_p2>CGGAGATGTGAGGTAAAAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>131</pcr_amplicon_size>
		<canonical_amplicon>AACTAACAGGTCCAAGAAGAGATTTTAAAAATGTGTTAGGAAGAACTTCAAGAGTGCAAAAAAAAACAAATATCCCGCTATCAAAAACCTGTTCCCAAGACAAGATTTCTAACTTTTACCTCACATCTCCG</canonical_amplicon>
		<polymorphic_amplicon>AACTAACAGGTCCAAGAAGAGATTTTAAAAATGTGTTAGGAAGAACTTCAAGAGTGCAAAAAAAAACAAATATCCCKCTATCAAAAACCTGTTCCCAAGACAAGATTTCTAACTTTTACCTCACATCTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6488</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>182521</contig_pos>
        <strand>+</strand>
        <context>ARATTTATAA[A/C]TTTCAGAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCAGGAATTACCGTATTTGGGAACTTTCAAAAATTTTGAAAATTTATAA</left_flank>
        <right_flank>TTTCAGAAATTTTGGATTTCTGAGTTTCTGAAGGTTGAAAAAACTTGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGGATAACATGTCCAAGAGTCTATTTGAATGACAAAAAAACTACTTTTTATCAAATTGGTTGAAAATTGTCATTCAAAAATATTTTTCGACATGTTACCGGACCGGAATCCGGCTTGAATGATATAGACGTAATGGGTCCTGCCGAGACCTATCATTTGGTACCAAAACCGTCTGAATATCTCGTTCTAGGGGAAAAGTTATCAGCCGGTCCGCTTGCAAGCAAGCTCTCAATATAATTTTATCCATTTTTTTTTGTTTTTTTTTTTTGGATGGTTTGTCTGTTTGATCTAAAAAGATTAAAAAACTCGGAAAATTTTTTGATCGAAAAAAAATCACATAAGGGTTAAAACCCCCTTATTTGTTTTTTGAAAATTTCAAAACTTGTGAAATGACGTGCCCGGCTCCAAAGCCCGGCCCGGCCCGGCCCGGCCCGTTACAAGTATGATTTTCAGGAATTACCGTATTTGGGAACTTTCAAAAATTTTGAAAATTTATAAATTTCAGAAATTTTGGATTTCTGAGTTTCTGAAGGTTGAAAAAACTTGAATTGTTGAATTTTTCAAACAAACGACGTTTTGGAATTCTCAAAATTTCAAAATTTTCGCCGAACCGTAATTTCGAGGTTATTCCATTTCAGACGAACGATTTCAACGCGTTTTTTTTCAAATTTTTCATGAATTTTGTATCTTTTTCACTATTTCCTATGAAATTTCATGACGTTTTGGCCAATATTCGGCTTATTTCCAACCAAATTTTCGACTTTTTCGTCCCCGCACCTTCAACTCGAACTCCTCTGTACAACACACGACTCCGCCCACATTCTCCTTCCCGATCAGCTCATTTTTCATCGATTGAAATGGCATTGCGCCGAGGATCAGTGTGTCATCAACACGATTGTACCACGCCCAACGGGATCCTTGCACATAATTTCTGAATAGATTATAGCCAAGTGACGGATAGAATACCAGTGATGTTAGCATGTTTTCTGAAAGAATTGA</canonical>
            <polymorphic>TAGGATAACATGTCCAAGAGTCTATTTGAATGACAAAAAAACTACTTTTTATCAAATTGGTTGAAAATTGTCATTCAAAAATATTTTTCGACATGTTACCGGACCGGAATCCGGCTTGAATGATATAGACGTAATGGGTCCTGCCGAGACCTATCATTTGGTACCAAAACCGTCTGAATATCTCGTTCTAGGGGAAAAGTTATCAGCCGGTCCGCTTGCAAGCAAGCTCTCAATATAATTTTATCCATTTTTTTTTGTTTTTTTTTTTTGGATGGTTTGTCTGTTTGATCTAAAAAGATTAAAAAACTCGGAAAATTTTTTGATCGAAAAAAAATCACATAAGGGTTAAAACCCCCTTATTTGTTTTTTGAAAATTTCAAAACTTGTGAAATGACGTGCCCGGCTCCAAAGCCCGGCCCGGCCCGGCCCGGCCCGTTACAAGTATGATTTTCAGGAATTACCGTATTTGGGAACTTTCAAAAATTTTGAAAATTTATAAMTTTCAGAAATTTTGGATTTCTGAGTTTCTGAAGGTTGAAAAAACTTGAATTGTTGAATTTTTCAAACAAACGACGTTTTGGAATTCTCAAAATTTCAAAATTTTCGCCGAACCGTAATTTCGAGGTTATTCCATTTCAGACGAACGATTTCAACGCGTTTTTTTTCAAATTTTTCATGAATTTTGTATCTTTTTCACTATTTCCTATGAAATTTCATGACGTTTTGGCCAATATTCGGCTTATTTCCAACCAAATTTTCGACTTTTTCGTCCCCGCACCTTCAACTCGAACTCCTCTGTACAACACACGACTCCGCCCACATTCTCCTTCCCGATCAGCTCATTTTTCATCGATTGAAATGGCATTGCGCCGAGGATCAGTGTGTCATCAACACGATTGTACCACGCCCAACGGGATCCTTGCACATAATTTCTGAATAGATTATAGCCAAGTGACGGATAGAATACCAGTGATGTTAGCATGTTTTCTGAAAGAATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>313 248 109 69 59 48 43 31 26 11 9 9 9 8 8</canonical_bands>
                <polymorphic_bands>313 248 109 69 59 48 43 31 26 17 11 9 9 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>175 171 83 77 67 59 54 52 43 40 31 26 26 17 11 11 9 9 9 8 8 8 6</canonical_bands>
                <polymorphic_bands>175 171 83 77 67 59 54 52 43 40 31 26 26 17 17 11 11 9 9 8 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAGGGTTAAAACCCCCTTAT</pcr_primer_p1>
		<pcr_primer_p2>TTGAAAAATTCAACAATTCAAGT</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>TAAGGGTTAAAACCCCCTTATTTGTTTTTTGAAAATTTCAAAACTTGTGAAATGACGTGCCCGGCTCCAAAGCCCGGCCCGGCCCGGCCCGGCCCGTTACAAGTATGATTTTCAGGAATTACCGTATTTGGGAACTTTCAAAAATTTTGAAAATTTATAAATTTCAGAAATTTTGGATTTCTGAGTTTCTGAAGGTTGAAAAAACTTGAATTGTTGAATTTTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TAAGGGTTAAAACCCCCTTATTTGTTTTTTGAAAATTTCAAAACTTGTGAAATGACGTGCCCGGCTCCAAAGCCCGGCCCGGCCCGGCCCGGCCCGTTACAAGTATGATTTTCAGGAATTACCGTATTTGGGAACTTTCAAAAATTTTGAAAATTTATAAMTTTCAGAAATTTTGGATTTCTGAGTTTCTGAAGGTTGAAAAAACTTGAATTGTTGAATTTTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6489</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>182543</contig_pos>
        <strand>+</strand>
        <context>TTGGATTTCT[A/G]AGTTTCTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACTTTCAAAAATTTTGAAAATTTATAAATTTCAGAAATTTTGGATTTCT</left_flank>
        <right_flank>AGTTTCTGAAGGTTGAAAAAACTTGAATTGTTGAATTTTTCAAACAAACG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTGAATGACAAAAAAACTACTTTTTATCAAATTGGTTGAAAATTGTCATTCAAAAATATTTTTCGACATGTTACCGGACCGGAATCCGGCTTGAATGATATAGACGTAATGGGTCCTGCCGAGACCTATCATTTGGTACCAAAACCGTCTGAATATCTCGTTCTAGGGGAAAAGTTATCAGCCGGTCCGCTTGCAAGCAAGCTCTCAATATAATTTTATCCATTTTTTTTTGTTTTTTTTTTTTGGATGGTTTGTCTGTTTGATCTAAAAAGATTAAAAAACTCGGAAAATTTTTTGATCGAAAAAAAATCACATAAGGGTTAAAACCCCCTTATTTGTTTTTTGAAAATTTCAAAACTTGTGAAATGACGTGCCCGGCTCCAAAGCCCGGCCCGGCCCGGCCCGGCCCGTTACAAGTATGATTTTCAGGAATTACCGTATTTGGGAACTTTCAAAAATTTTGAAAATTTATAAATTTCAGAAATTTTGGATTTCTGAGTTTCTGAAGGTTGAAAAAACTTGAATTGTTGAATTTTTCAAACAAACGACGTTTTGGAATTCTCAAAATTTCAAAATTTTCGCCGAACCGTAATTTCGAGGTTATTCCATTTCAGACGAACGATTTCAACGCGTTTTTTTTCAAATTTTTCATGAATTTTGTATCTTTTTCACTATTTCCTATGAAATTTCATGACGTTTTGGCCAATATTCGGCTTATTTCCAACCAAATTTTCGACTTTTTCGTCCCCGCACCTTCAACTCGAACTCCTCTGTACAACACACGACTCCGCCCACATTCTCCTTCCCGATCAGCTCATTTTTCATCGATTGAAATGGCATTGCGCCGAGGATCAGTGTGTCATCAACACGATTGTACCACGCCCAACGGGATCCTTGCACATAATTTCTGAATAGATTATAGCCAAGTGACGGATAGAATACCAGTGATGTTAGCATGTTTTCTGAAAGAATTGATTATTTTGAAATTTTTGTTGAT</canonical>
            <polymorphic>TATTTGAATGACAAAAAAACTACTTTTTATCAAATTGGTTGAAAATTGTCATTCAAAAATATTTTTCGACATGTTACCGGACCGGAATCCGGCTTGAATGATATAGACGTAATGGGTCCTGCCGAGACCTATCATTTGGTACCAAAACCGTCTGAATATCTCGTTCTAGGGGAAAAGTTATCAGCCGGTCCGCTTGCAAGCAAGCTCTCAATATAATTTTATCCATTTTTTTTTGTTTTTTTTTTTTGGATGGTTTGTCTGTTTGATCTAAAAAGATTAAAAAACTCGGAAAATTTTTTGATCGAAAAAAAATCACATAAGGGTTAAAACCCCCTTATTTGTTTTTTGAAAATTTCAAAACTTGTGAAATGACGTGCCCGGCTCCAAAGCCCGGCCCGGCCCGGCCCGGCCCGTTACAAGTATGATTTTCAGGAATTACCGTATTTGGGAACTTTCAAAAATTTTGAAAATTTATAAATTTCAGAAATTTTGGATTTCTRAGTTTCTGAAGGTTGAAAAAACTTGAATTGTTGAATTTTTCAAACAAACGACGTTTTGGAATTCTCAAAATTTCAAAATTTTCGCCGAACCGTAATTTCGAGGTTATTCCATTTCAGACGAACGATTTCAACGCGTTTTTTTTCAAATTTTTCATGAATTTTGTATCTTTTTCACTATTTCCTATGAAATTTCATGACGTTTTGGCCAATATTCGGCTTATTTCCAACCAAATTTTCGACTTTTTCGTCCCCGCACCTTCAACTCGAACTCCTCTGTACAACACACGACTCCGCCCACATTCTCCTTCCCGATCAGCTCATTTTTCATCGATTGAAATGGCATTGCGCCGAGGATCAGTGTGTCATCAACACGATTGTACCACGCCCAACGGGATCCTTGCACATAATTTCTGAATAGATTATAGCCAAGTGACGGATAGAATACCAGTGATGTTAGCATGTTTTCTGAAAGAATTGATTATTTTGAAATTTTTGTTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>296 195 153 135 109 55 33 16 8</canonical_bands>
                <polymorphic_bands>296 195 153 135 109 55 33 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTACCGTATTTGGGAACTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCATAGGAAATAGTGAAAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AATTACCGTATTTGGGAACTTTCAAAAATTTTGAAAATTTATAAATTTCAGAAATTTTGGATTTCTGAGTTTCTGAAGGTTGAAAAAACTTGAATTGTTGAATTTTTCAAACAAACGACGTTTTGGAATTCTCAAAATTTCAAAATTTTCGCCGAACCGTAATTTCGAGGTTATTCCATTTCAGACGAACGATTTCAACGCGTTTTTTTTCAAATTTTTCATGAATTTTGTATCTTTTTCACTATTTCCTATGAAA</canonical_amplicon>
		<polymorphic_amplicon>AATTACCGTATTTGGGAACTTTCAAAAATTTTGAAAATTTATAAATTTCAGAAATTTTGGATTTCTRAGTTTCTGAAGGTTGAAAAAACTTGAATTGTTGAATTTTTCAAACAAACGACGTTTTGGAATTCTCAAAATTTCAAAATTTTCGCCGAACCGTAATTTCGAGGTTATTCCATTTCAGACGAACGATTTCAACGCGTTTTTTTTCAAATTTTTCATGAATTTTGTATCTTTTTCACTATTTCCTATGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6490</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>182745</contig_pos>
        <strand>+</strand>
        <context>TCATGACGTT[C/T]TGGCCAATAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATGAATTTTGTATCTTTTTCACTATTTCCTATGAAATTTCATGACGTT</left_flank>
        <right_flank>TGGCCAATATTCGGCTTATTTCCAACCAAATTTTCGACTTTTTCGTCCCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTCTCAATATAATTTTATCCATTTTTTTTTGTTTTTTTTTTTTGGATGGTTTGTCTGTTTGATCTAAAAAGATTAAAAAACTCGGAAAATTTTTTGATCGAAAAAAAATCACATAAGGGTTAAAACCCCCTTATTTGTTTTTTGAAAATTTCAAAACTTGTGAAATGACGTGCCCGGCTCCAAAGCCCGGCCCGGCCCGGCCCGGCCCGTTACAAGTATGATTTTCAGGAATTACCGTATTTGGGAACTTTCAAAAATTTTGAAAATTTATAAATTTCAGAAATTTTGGATTTCTGAGTTTCTGAAGGTTGAAAAAACTTGAATTGTTGAATTTTTCAAACAAACGACGTTTTGGAATTCTCAAAATTTCAAAATTTTCGCCGAACCGTAATTTCGAGGTTATTCCATTTCAGACGAACGATTTCAACGCGTTTTTTTTCAAATTTTTCATGAATTTTGTATCTTTTTCACTATTTCCTATGAAATTTCATGACGTTTTGGCCAATATTCGGCTTATTTCCAACCAAATTTTCGACTTTTTCGTCCCCGCACCTTCAACTCGAACTCCTCTGTACAACACACGACTCCGCCCACATTCTCCTTCCCGATCAGCTCATTTTTCATCGATTGAAATGGCATTGCGCCGAGGATCAGTGTGTCATCAACACGATTGTACCACGCCCAACGGGATCCTTGCACATAATTTCTGAATAGATTATAGCCAAGTGACGGATAGAATACCAGTGATGTTAGCATGTTTTCTGAAAGAATTGATTATTTTGAAATTTTTGTTGATTTGAATAATTAAGGAAAATTGATTTTTATCATAAAAATCCTAGAAAGTGGGCGGAGCCGCCTAAATTTCGAAAATTTCATATTTTTCGACAATTTTCAGTGAAAACTTCACTGAAAATTGGCTTTGTAAACGGTTTTTTGAGAATTTTTAGTGGAAAAAAAACCCTAGAAAGTGGGCGGAGCCTAAATGTTTGAAACTTTAA</canonical>
            <polymorphic>AGCTCTCAATATAATTTTATCCATTTTTTTTTGTTTTTTTTTTTTGGATGGTTTGTCTGTTTGATCTAAAAAGATTAAAAAACTCGGAAAATTTTTTGATCGAAAAAAAATCACATAAGGGTTAAAACCCCCTTATTTGTTTTTTGAAAATTTCAAAACTTGTGAAATGACGTGCCCGGCTCCAAAGCCCGGCCCGGCCCGGCCCGGCCCGTTACAAGTATGATTTTCAGGAATTACCGTATTTGGGAACTTTCAAAAATTTTGAAAATTTATAAATTTCAGAAATTTTGGATTTCTGAGTTTCTGAAGGTTGAAAAAACTTGAATTGTTGAATTTTTCAAACAAACGACGTTTTGGAATTCTCAAAATTTCAAAATTTTCGCCGAACCGTAATTTCGAGGTTATTCCATTTCAGACGAACGATTTCAACGCGTTTTTTTTCAAATTTTTCATGAATTTTGTATCTTTTTCACTATTTCCTATGAAATTTCATGACGTTYTGGCCAATATTCGGCTTATTTCCAACCAAATTTTCGACTTTTTCGTCCCCGCACCTTCAACTCGAACTCCTCTGTACAACACACGACTCCGCCCACATTCTCCTTCCCGATCAGCTCATTTTTCATCGATTGAAATGGCATTGCGCCGAGGATCAGTGTGTCATCAACACGATTGTACCACGCCCAACGGGATCCTTGCACATAATTTCTGAATAGATTATAGCCAAGTGACGGATAGAATACCAGTGATGTTAGCATGTTTTCTGAAAGAATTGATTATTTTGAAATTTTTGTTGATTTGAATAATTAAGGAAAATTGATTTTTATCATAAAAATCCTAGAAAGTGGGCGGAGCCGCCTAAATTTCGAAAATTTCATATTTTTCGACAATTTTCAGTGAAAACTTCACTGAAAATTGGCTTTGTAAACGGTTTTTTGAGAATTTTTAGTGGAAAAAAAACCCTAGAAAGTGGGCGGAGCCTAAATGTTTGAAACTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATTTTTCAAACAAACGAC</pcr_primer_p1>
		<pcr_primer_p2>GTTGTACAGAGGAGTTCGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGAATTTTTCAAACAAACGACGTTTTGGAATTCTCAAAATTTCAAAATTTTCGCCGAACCGTAATTTCGAGGTTATTCCATTTCAGACGAACGATTTCAACGCGTTTTTTTTCAAATTTTTCATGAATTTTGTATCTTTTTCACTATTTCCTATGAAATTTCATGACGTTTTGGCCAATATTCGGCTTATTTCCAACCAAATTTTCGACTTTTTCGTCCCCGCACCTTCAACTCGAACTCCTCTGTACAAC</canonical_amplicon>
		<polymorphic_amplicon>TGAATTTTTCAAACAAACGACGTTTTGGAATTCTCAAAATTTCAAAATTTTCGCCGAACCGTAATTTCGAGGTTATTCCATTTCAGACGAACGATTTCAACGCGTTTTTTTTCAAATTTTTCATGAATTTTGTATCTTTTTCACTATTTCCTATGAAATTTCATGACGTTYTGGCCAATATTCGGCTTATTTCCAACCAAATTTTCGACTTTTTCGTCCCCGCACCTTCAACTCGAACTCCTCTGTACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6491</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>255094</contig_pos>
        <strand>+</strand>
        <context>TTTTACTGCT[A/G]AAAGTTTTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTCATCTGCAAAACTCCTGCTCGAAAGCCCAAAAAATTTTTTACTGCT</left_flank>
        <right_flank>AAAGTTTTTGATCTCTTATTCTCTTTTCTGCAAAAAAATTTTATTTTTCT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAATTTCCAATTTCTGAAATTCGGAAATTATGAAATTTTGATATTTTGAAATTTTGAAATTTTGAAATTCTGAGATTCTGAGATTTTGATGTTCTGAGATTCTAAGATTCAAATATTCTGAGGTTCTGAAATTTTTATAATCTGGAAATTCTGAGATTCTGAAACCCAAATATTCTGAAATTCTAAAATTCTGAAATTCCTGATTCTCAGATTCTGAATGTCTGAAACTCTGCGATTCTTGACCAAATTTGTTTATCAAATTCTCAATTTTTTCTCTCTAATTTGCAGGTGTTCTTTTTTCTAATGGTCACCAATTATGAACCAATTATTGATATGTCTGAAAAACTTTTTTCGCTTAAAAGTTAGTCAGAATCTTGGAATTTCAAACATCAAAGTTGAACTCCTTCTAAGCTTTTTAGTTTGTCAGAATTTCAGATTTCAAGTTCAAATTCATCTGCAAAACTCCTGCTCGAAAGCCCAAAAAATTTTTTACTGCTAAAAGTTTTTGATCTCTTATTCTCTTTTCTGCAAAAAAATTTTATTTTTCTTCATACATTCCTATACCAAAAACAAGTTTGCCTCTCATCTCAAATAAACTCTGACCTCTGAAATCCTATGCATACATGTAAAAAACTAAAAACAACTAAAAACAAAAAAGATGAATGAAAATATAAGCATGAGAGATCCCCCTTCACTCATCATCATCACAGTGTTCGCCGTCAAATGATATTTTGACGATTTTCAGTCAAAAATAGCCAATTTTGGAATCCTACAATAGTAGTTCACATTTTCATGATCTCTCTGAAAGTTTCAGTGTGTACTGAACGAAGATAGAGCTTCACTTTTGTTGTTGATAACTTTGTGGTAACTTTTTTGGTTTTCGAGATGTTCGCCTTCAAAAATACCTTACCCTCTCCCCTCTTTTCCTCTTGTATTGTAGCGGCTTCAATCTTCAAAGGCGCATGTCTCAAAAACCAAAAAAACTAGAAAAAAGTTGT</canonical>
            <polymorphic>CTGAATTTCCAATTTCTGAAATTCGGAAATTATGAAATTTTGATATTTTGAAATTTTGAAATTTTGAAATTCTGAGATTCTGAGATTTTGATGTTCTGAGATTCTAAGATTCAAATATTCTGAGGTTCTGAAATTTTTATAATCTGGAAATTCTGAGATTCTGAAACCCAAATATTCTGAAATTCTAAAATTCTGAAATTCCTGATTCTCAGATTCTGAATGTCTGAAACTCTGCGATTCTTGACCAAATTTGTTTATCAAATTCTCAATTTTTTCTCTCTAATTTGCAGGTGTTCTTTTTTCTAATGGTCACCAATTATGAACCAATTATTGATATGTCTGAAAAACTTTTTTCGCTTAAAAGTTAGTCAGAATCTTGGAATTTCAAACATCAAAGTTGAACTCCTTCTAAGCTTTTTAGTTTGTCAGAATTTCAGATTTCAAGTTCAAATTCATCTGCAAAACTCCTGCTCGAAAGCCCAAAAAATTTTTTACTGCTRAAAGTTTTTGATCTCTTATTCTCTTTTCTGCAAAAAAATTTTATTTTTCTTCATACATTCCTATACCAAAAACAAGTTTGCCTCTCATCTCAAATAAACTCTGACCTCTGAAATCCTATGCATACATGTAAAAAACTAAAAACAACTAAAAACAAAAAAGATGAATGAAAATATAAGCATGAGAGATCCCCCTTCACTCATCATCATCACAGTGTTCGCCGTCAAATGATATTTTGACGATTTTCAGTCAAAAATAGCCAATTTTGGAATCCTACAATAGTAGTTCACATTTTCATGATCTCTCTGAAAGTTTCAGTGTGTACTGAACGAAGATAGAGCTTCACTTTTGTTGTTGATAACTTTGTGGTAACTTTTTTGGTTTTCGAGATGTTCGCCTTCAAAAATACCTTACCCTCTCCCCTCTTTTCCTCTTGTATTGTAGCGGCTTCAATCTTCAAAGGCGCATGTCTCAAAAACCAAAAAAACTAGAAAAAAGTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGCTTAAAAGTTAGTCAGAATC</pcr_primer_p1>
		<pcr_primer_p2>CAGAGTTTATTTGAGATGAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCGCTTAAAAGTTAGTCAGAATCTTGGAATTTCAAACATCAAAGTTGAACTCCTTCTAAGCTTTTTAGTTTGTCAGAATTTCAGATTTCAAGTTCAAATTCATCTGCAAAACTCCTGCTCGAAAGCCCAAAAAATTTTTTACTGCTAAAAGTTTTTGATCTCTTATTCTCTTTTCTGCAAAAAAATTTTATTTTTCTTCATACATTCCTATACCAAAAACAAGTTTGCCTCTCATCTCAAATAAACTCTG</canonical_amplicon>
		<polymorphic_amplicon>TCGCTTAAAAGTTAGTCAGAATCTTGGAATTTCAAACATCAAAGTTGAACTCCTTCTAAGCTTTTTAGTTTGTCAGAATTTCAGATTTCAAGTTCAAATTCATCTGCAAAACTCCTGCTCGAAAGCCCAAAAAATTTTTTACTGCTRAAAGTTTTTGATCTCTTATTCTCTTTTCTGCAAAAAAATTTTATTTTTCTTCATACATTCCTATACCAAAAACAAGTTTGCCTCTCATCTCAAATAAACTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6493</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>257147</contig_pos>
        <strand>+</strand>
        <context>CGCTTGAATT[A/G]TGTCATTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAAATGTTTTTGAGACGAAAGTTTTTCTTTTTGGTTTTCCGCTTGAATT</left_flank>
        <right_flank>TGTCATTTTTTACTTCTTTTTTGAAGAAAAACACAAAAGTGGTTTTTGTT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTAACTCTATTATCTCGGTTCCTATAAGAATGATAAAAAATCTGTCAACTGATAAAATATTTTTGATAATATCACCAACATTTTATCAATTGACAAATTTTTGATATCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTTTTTCCGATCGCCTAAATTATGACCAATGAAGATTTTTCTCTCTCCCAAAGGATCCTCGACAAATAGTCCACTCATTTTTGTTCCTCGCTCCTCCTTGTTCCTTTCTTCGCTTTTCTTAGTTTTTCTTCTGTCCTGTTTATGTCAAAAATAGAATAACAAAACCACTTTTCTCCTCTGTCGTCATCTCGCTTTTTTCTCAATTTTTAGACTAAAAGCTCTTCCGAAAAAAAGAGAACTTTTTTTTGACATATCCGTATATTTTTTTCACTTTTCACTCTGATGACAAATTTTTAAATGTTTTTGAGACGAAAGTTTTTCTTTTTGGTTTTCCGCTTGAATTGTGTCATTTTTTACTTCTTTTTTGAAGAAAAACACAAAAGTGGTTTTTGTTTTAATTTTTGATTGAATTCCCGATTCTTGAGATTTGAAAAACAATGAAGATGAATCCTATAATTAAATTTGCCAAAGTTTAGAATATCAAAATTTCAGAATTTCTAAATTCTAGAACTTTTTGTTCCTATTCTTGAATTTTCTGATTTTCTAATTTTGTTTTCTGACTTCTGAAAAAAGGAACAAAGTCAAAACAGCAATTTTGAGAATTTCGGTTTTTGTTGTTCGAATATTGCTTTCAAATCGGAAATTCTGAAGCACATATACTAGCTTTTTAAAACCGATAACTTTCTAAGAATTAGAAATATTCGAAATTTTCGAATACTTTCAGATGTTTTTTTAGTTTTTCAGGTTTTTGAGATTTTTTGACATTTTCAGGCAACTAAAAATTACAAATTCAAAATAATTGGAAATTAAAAGTTTCAGTTTTAGAGTCGAAAATGTGAAAAAT</canonical>
            <polymorphic>TTTTAACTCTATTATCTCGGTTCCTATAAGAATGATAAAAAATCTGTCAACTGATAAAATATTTTTGATAATATCACCAACATTTTATCAATTGACAAATTTTTGATATCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTTTTTCCGATCGCCTAAATTATGACCAATGAAGATTTTTCTCTCTCCCAAAGGATCCTCGACAAATAGTCCACTCATTTTTGTTCCTCGCTCCTCCTTGTTCCTTTCTTCGCTTTTCTTAGTTTTTCTTCTGTCCTGTTTATGTCAAAAATAGAATAACAAAACCACTTTTCTCCTCTGTCGTCATCTCGCTTTTTTCTCAATTTTTAGACTAAAAGCTCTTCCGAAAAAAAGAGAACTTTTTTTTGACATATCCGTATATTTTTTTCACTTTTCACTCTGATGACAAATTTTTAAATGTTTTTGAGACGAAAGTTTTTCTTTTTGGTTTTCCGCTTGAATTRTGTCATTTTTTACTTCTTTTTTGAAGAAAAACACAAAAGTGGTTTTTGTTTTAATTTTTGATTGAATTCCCGATTCTTGAGATTTGAAAAACAATGAAGATGAATCCTATAATTAAATTTGCCAAAGTTTAGAATATCAAAATTTCAGAATTTCTAAATTCTAGAACTTTTTGTTCCTATTCTTGAATTTTCTGATTTTCTAATTTTGTTTTCTGACTTCTGAAAAAAGGAACAAAGTCAAAACAGCAATTTTGAGAATTTCGGTTTTTGTTGTTCGAATATTGCTTTCAAATCGGAAATTCTGAAGCACATATACTAGCTTTTTAAAACCGATAACTTTCTAAGAATTAGAAATATTCGAAATTTTCGAATACTTTCAGATGTTTTTTTAGTTTTTCAGGTTTTTGAGATTTTTTGACATTTTCAGGCAACTAAAAATTACAAATTCAAAATAATTGGAAATTAAAAGTTTCAGTTTTAGAGTCGAAAATGTGAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>268 185 114 103 94 76 69 39 31 8 7 6</canonical_bands>
                <polymorphic_bands>268 185 114 103 100 94 76 39 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAACAAAACCACTTTTCTCCTC</pcr_primer_p1>
		<pcr_primer_p2>TCAAAAATTAAAACAAAAACCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAACAAAACCACTTTTCTCCTCTGTCGTCATCTCGCTTTTTTCTCAATTTTTAGACTAAAAGCTCTTCCGAAAAAAAGAGAACTTTTTTTTGACATATCCGTATATTTTTTTCACTTTTCACTCTGATGACAAATTTTTAAATGTTTTTGAGACGAAAGTTTTTCTTTTTGGTTTTCCGCTTGAATTGTGTCATTTTTTACTTCTTTTTTGAAGAAAAACACAAAAGTGGTTTTTGTTTTAATTTTTGA</canonical_amplicon>
		<polymorphic_amplicon>ATAACAAAACCACTTTTCTCCTCTGTCGTCATCTCGCTTTTTTCTCAATTTTTAGACTAAAAGCTCTTCCGAAAAAAAGAGAACTTTTTTTTGACATATCCGTATATTTTTTTCACTTTTCACTCTGATGACAAATTTTTAAATGTTTTTGAGACGAAAGTTTTTCTTTTTGGTTTTCCGCTTGAATTRTGTCATTTTTTACTTCTTTTTTGAAGAAAAACACAAAAGTGGTTTTTGTTTTAATTTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6494</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>257132</contig_pos>
        <strand></strand>
        <context>TTCTTTTTGG[T/C]TTTCCGCTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCTGATGACAAATTTTTAAATGTTTTTGAGACGAAAGTTTTTCTTTTTGG</left_flank>
        <right_flank>TTTCCGCTTGAATTGTGTCATTTTTTACTTCTTTTTTGAAGAAAAACACA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCCTAACTTTTAACTTTTAACTCTATTATCTCGGTTCCTATAAGAATGATAAAAAATCTGTCAACTGATAAAATATTTTTGATAATATCACCAACATTTTATCAATTGACAAATTTTTGATATCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTTTTTCCGATCGCCTAAATTATGACCAATGAAGATTTTTCTCTCTCCCAAAGGATCCTCGACAAATAGTCCACTCATTTTTGTTCCTCGCTCCTCCTTGTTCCTTTCTTCGCTTTTCTTAGTTTTTCTTCTGTCCTGTTTATGTCAAAAATAGAATAACAAAACCACTTTTCTCCTCTGTCGTCATCTCGCTTTTTTCTCAATTTTTAGACTAAAAGCTCTTCCGAAAAAAAGAGAACTTTTTTTTGACATATCCGTATATTTTTTTCACTTTTCACTCTGATGACAAATTTTTAAATGTTTTTGAGACGAAAGTTTTTCTTTTTGGTTTTCCGCTTGAATTGTGTCATTTTTTACTTCTTTTTTGAAGAAAAACACAAAAGTGGTTTTTGTTTTAATTTTTGATTGAATTCCCGATTCTTGAGATTTGAAAAACAATGAAGATGAATCCTATAATTAAATTTGCCAAAGTTTAGAATATCAAAATTTCAGAATTTCTAAATTCTAGAACTTTTTGTTCCTATTCTTGAATTTTCTGATTTTCTAATTTTGTTTTCTGACTTCTGAAAAAAGGAACAAAGTCAAAACAGCAATTTTGAGAATTTCGGTTTTTGTTGTTCGAATATTGCTTTCAAATCGGAAATTCTGAAGCACATATACTAGCTTTTTAAAACCGATAACTTTCTAAGAATTAGAAATATTCGAAATTTTCGAATACTTTCAGATGTTTTTTTAGTTTTTCAGGTTTTTGAGATTTTTTGACATTTTCAGGCAACTAAAAATTACAAATTCAAAATAATTGGAAATTAAAAGTTTCAGTTTTAGAGTC</canonical>
            <polymorphic>TCCCTAACTTTTAACTTTTAACTCTATTATCTCGGTTCCTATAAGAATGATAAAAAATCTGTCAACTGATAAAATATTTTTGATAATATCACCAACATTTTATCAATTGACAAATTTTTGATATCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTTTTTCCGATCGCCTAAATTATGACCAATGAAGATTTTTCTCTCTCCCAAAGGATCCTCGACAAATAGTCCACTCATTTTTGTTCCTCGCTCCTCCTTGTTCCTTTCTTCGCTTTTCTTAGTTTTTCTTCTGTCCTGTTTATGTCAAAAATAGAATAACAAAACCACTTTTCTCCTCTGTCGTCATCTCGCTTTTTTCTCAATTTTTAGACTAAAAGCTCTTCCGAAAAAAAGAGAACTTTTTTTTGACATATCCGTATATTTTTTTCACTTTTCACTCTGATGACAAATTTTTAAATGTTTTTGAGACGAAAGTTTTTCTTTTTGGYTTTCCGCTTGAATTGTGTCATTTTTTACTTCTTTTTTGAAGAAAAACACAAAAGTGGTTTTTGTTTTAATTTTTGATTGAATTCCCGATTCTTGAGATTTGAAAAACAATGAAGATGAATCCTATAATTAAATTTGCCAAAGTTTAGAATATCAAAATTTCAGAATTTCTAAATTCTAGAACTTTTTGTTCCTATTCTTGAATTTTCTGATTTTCTAATTTTGTTTTCTGACTTCTGAAAAAAGGAACAAAGTCAAAACAGCAATTTTGAGAATTTCGGTTTTTGTTGTTCGAATATTGCTTTCAAATCGGAAATTCTGAAGCACATATACTAGCTTTTTAAAACCGATAACTTTCTAAGAATTAGAAATATTCGAAATTTTCGAATACTTTCAGATGTTTTTTTAGTTTTTCAGGTTTTTGAGATTTTTTGACATTTTCAGGCAACTAAAAATTACAAATTCAAAATAATTGGAAATTAAAAGTTTCAGTTTTAGAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAACAAAACCACTTTTCTCCTC</pcr_primer_p1>
		<pcr_primer_p2>TCAAAAATTAAAACAAAAACCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAACAAAACCACTTTTCTCCTCTGTCGTCATCTCGCTTTTTTCTCAATTTTTAGACTAAAAGCTCTTCCGAAAAAAAGAGAACTTTTTTTTGACATATCCGTATATTTTTTTCACTTTTCACTCTGATGACAAATTTTTAAATGTTTTTGAGACGAAAGTTTTTCTTTTTGGTTTTCCGCTTGAATTGTGTCATTTTTTACTTCTTTTTTGAAGAAAAACACAAAAGTGGTTTTTGTTTTAATTTTTGA</canonical_amplicon>
		<polymorphic_amplicon>ATAACAAAACCACTTTTCTCCTCTGTCGTCATCTCGCTTTTTTCTCAATTTTTAGACTAAAAGCTCTTCCGAAAAAAAGAGAACTTTTTTTTGACATATCCGTATATTTTTTTCACTTTTCACTCTGATGACAAATTTTTAAATGTTTTTGAGACGAAAGTTTTTCTTTTTGGYTTTCCGCTTGAATTGTGTCATTTTTTACTTCTTTTTTGAAGAAAAACACAAAAGTGGTTTTTGTTTTAATTTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6495</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>256916</contig_pos>
        <strand>+</strand>
        <context>CCTTTCTTCG[C/T]TTTTCTTAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAATAGTCCACTCATTTTTGTTCCTCGCTCCTCCTTGTTCCTTTCTTCG</left_flank>
        <right_flank>TTTTCTTAGTTTTTCTTCTGTCCTGTTTATGTCAAAAATAGAATAACAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCGGCCGAGTGCTATTAAGAAAGGAAGAGAGGAGACATTCGGAGTCACTAATATCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTGGTGATATCATGATAAATATTCTATCAGTTGACAGTTGTTTGATATCTTTCACATGAATCGAGATAATTTAGCTCAAAGTCCAAGTGTAGGGTCCGTAAACAGTAGTAGAAAGATTCCCTAACTTTTAACTTTTAACTCTATTATCTCGGTTCCTATAAGAATGATAAAAAATCTGTCAACTGATAAAATATTTTTGATAATATCACCAACATTTTATCAATTGACAAATTTTTGATATCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTTTTTCCGATCGCCTAAATTATGACCAATGAAGATTTTTCTCTCTCCCAAAGGATCCTCGACAAATAGTCCACTCATTTTTGTTCCTCGCTCCTCCTTGTTCCTTTCTTCGCTTTTCTTAGTTTTTCTTCTGTCCTGTTTATGTCAAAAATAGAATAACAAAACCACTTTTCTCCTCTGTCGTCATCTCGCTTTTTTCTCAATTTTTAGACTAAAAGCTCTTCCGAAAAAAAGAGAACTTTTTTTTGACATATCCGTATATTTTTTTCACTTTTCACTCTGATGACAAATTTTTAAATGTTTTTGAGACGAAAGTTTTTCTTTTTGGTTTTCCGCTTGAATTGTGTCATTTTTTACTTCTTTTTTGAAGAAAAACACAAAAGTGGTTTTTGTTTTAATTTTTGATTGAATTCCCGATTCTTGAGATTTGAAAAACAATGAAGATGAATCCTATAATTAAATTTGCCAAAGTTTAGAATATCAAAATTTCAGAATTTCTAAATTCTAGAACTTTTTGTTCCTATTCTTGAATTTTCTGATTTTCTAATTTTGTTTTCTGACTTCTGAAAAAAGGAACAAAGTCAAAACAGCAATTTTGAGAATTTCGGTTTTT</canonical>
            <polymorphic>GGCGGCCGAGTGCTATTAAGAAAGGAAGAGAGGAGACATTCGGAGTCACTAATATCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTGGTGATATCATGATAAATATTCTATCAGTTGACAGTTGTTTGATATCTTTCACATGAATCGAGATAATTTAGCTCAAAGTCCAAGTGTAGGGTCCGTAAACAGTAGTAGAAAGATTCCCTAACTTTTAACTTTTAACTCTATTATCTCGGTTCCTATAAGAATGATAAAAAATCTGTCAACTGATAAAATATTTTTGATAATATCACCAACATTTTATCAATTGACAAATTTTTGATATCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTTTTTCCGATCGCCTAAATTATGACCAATGAAGATTTTTCTCTCTCCCAAAGGATCCTCGACAAATAGTCCACTCATTTTTGTTCCTCGCTCCTCCTTGTTCCTTTCTTCGYTTTTCTTAGTTTTTCTTCTGTCCTGTTTATGTCAAAAATAGAATAACAAAACCACTTTTCTCCTCTGTCGTCATCTCGCTTTTTTCTCAATTTTTAGACTAAAAGCTCTTCCGAAAAAAAGAGAACTTTTTTTTGACATATCCGTATATTTTTTTCACTTTTCACTCTGATGACAAATTTTTAAATGTTTTTGAGACGAAAGTTTTTCTTTTTGGTTTTCCGCTTGAATTGTGTCATTTTTTACTTCTTTTTTGAAGAAAAACACAAAAGTGGTTTTTGTTTTAATTTTTGATTGAATTCCCGATTCTTGAGATTTGAAAAACAATGAAGATGAATCCTATAATTAAATTTGCCAAAGTTTAGAATATCAAAATTTCAGAATTTCTAAATTCTAGAACTTTTTGTTCCTATTCTTGAATTTTCTGATTTTCTAATTTTGTTTTCTGACTTCTGAAAAAAGGAACAAAGTCAAAACAGCAATTTTGAGAATTTCGGTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGACATTCGGAGTCACTA</pcr_primer_p1>
		<pcr_primer_p2>GTGGTTTTGTTATTCTATTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>524</pcr_amplicon_size>
		<canonical_amplicon>GGAGACATTCGGAGTCACTAATATCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTGGTGATATCATGATAAATATTCTATCAGTTGACAGTTGTTTGATATCTTTCACATGAATCGAGATAATTTAGCTCAAAGTCCAAGTGTAGGGTCCGTAAACAGTAGTAGAAAGATTCCCTAACTTTTAACTTTTAACTCTATTATCTCGGTTCCTATAAGAATGATAAAAAATCTGTCAACTGATAAAATATTTTTGATAATATCACCAACATTTTATCAATTGACAAATTTTTGATATCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTTTTTCCGATCGCCTAAATTATGACCAATGAAGATTTTTCTCTCTCCCAAAGGATCCTCGACAAATAGTCCACTCATTTTTGTTCCTCGCTCCTCCTTGTTCCTTTCTTCGCTTTTCTTAGTTTTTCTTCTGTCCTGTTTATGTCAAAAATAGAATAACAAAACCAC</canonical_amplicon>
		<polymorphic_amplicon>GGAGACATTCGGAGTCACTAATATCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTGGTGATATCATGATAAATATTCTATCAGTTGACAGTTGTTTGATATCTTTCACATGAATCGAGATAATTTAGCTCAAAGTCCAAGTGTAGGGTCCGTAAACAGTAGTAGAAAGATTCCCTAACTTTTAACTTTTAACTCTATTATCTCGGTTCCTATAAGAATGATAAAAAATCTGTCAACTGATAAAATATTTTTGATAATATCACCAACATTTTATCAATTGACAAATTTTTGATATCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTTTTTCCGATCGCCTAAATTATGACCAATGAAGATTTTTCTCTCTCCCAAAGGATCCTCGACAAATAGTCCACTCATTTTTGTTCCTCGCTCCTCCTTGTTCCTTTCTTCGYTTTTCTTAGTTTTTCTTCTGTCCTGTTTATGTCAAAAATAGAATAACAAAACCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6496</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>256865</contig_pos>
        <strand>+</strand>
        <context>AGGATCCTCG[A/G]CAAATAGTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCCTAAATTATGACCAATGAAGATTTTTCTCTCTCCCAAAGGATCCTCG</left_flank>
        <right_flank>CAAATAGTCCACTCATTTTTGTTCCTCGCTCCTCCTTGTTCCTTTCTTCG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACAGTATCCCATTTCATAGTTCAAACTGGGTGACCGAATGGCGGACTAACGGCGGCCGAGTGCTATTAAGAAAGGAAGAGAGGAGACATTCGGAGTCACTAATATCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTGGTGATATCATGATAAATATTCTATCAGTTGACAGTTGTTTGATATCTTTCACATGAATCGAGATAATTTAGCTCAAAGTCCAAGTGTAGGGTCCGTAAACAGTAGTAGAAAGATTCCCTAACTTTTAACTTTTAACTCTATTATCTCGGTTCCTATAAGAATGATAAAAAATCTGTCAACTGATAAAATATTTTTGATAATATCACCAACATTTTATCAATTGACAAATTTTTGATATCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTTTTTCCGATCGCCTAAATTATGACCAATGAAGATTTTTCTCTCTCCCAAAGGATCCTCGACAAATAGTCCACTCATTTTTGTTCCTCGCTCCTCCTTGTTCCTTTCTTCGCTTTTCTTAGTTTTTCTTCTGTCCTGTTTATGTCAAAAATAGAATAACAAAACCACTTTTCTCCTCTGTCGTCATCTCGCTTTTTTCTCAATTTTTAGACTAAAAGCTCTTCCGAAAAAAAGAGAACTTTTTTTTGACATATCCGTATATTTTTTTCACTTTTCACTCTGATGACAAATTTTTAAATGTTTTTGAGACGAAAGTTTTTCTTTTTGGTTTTCCGCTTGAATTGTGTCATTTTTTACTTCTTTTTTGAAGAAAAACACAAAAGTGGTTTTTGTTTTAATTTTTGATTGAATTCCCGATTCTTGAGATTTGAAAAACAATGAAGATGAATCCTATAATTAAATTTGCCAAAGTTTAGAATATCAAAATTTCAGAATTTCTAAATTCTAGAACTTTTTGTTCCTATTCTTGAATTTTCTGATTTTCTAATTTTGTTTTCTGACT</canonical>
            <polymorphic>GACAGTATCCCATTTCATAGTTCAAACTGGGTGACCGAATGGCGGACTAACGGCGGCCGAGTGCTATTAAGAAAGGAAGAGAGGAGACATTCGGAGTCACTAATATCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTGGTGATATCATGATAAATATTCTATCAGTTGACAGTTGTTTGATATCTTTCACATGAATCGAGATAATTTAGCTCAAAGTCCAAGTGTAGGGTCCGTAAACAGTAGTAGAAAGATTCCCTAACTTTTAACTTTTAACTCTATTATCTCGGTTCCTATAAGAATGATAAAAAATCTGTCAACTGATAAAATATTTTTGATAATATCACCAACATTTTATCAATTGACAAATTTTTGATATCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTTTTTCCGATCGCCTAAATTATGACCAATGAAGATTTTTCTCTCTCCCAAAGGATCCTCGRCAAATAGTCCACTCATTTTTGTTCCTCGCTCCTCCTTGTTCCTTTCTTCGCTTTTCTTAGTTTTTCTTCTGTCCTGTTTATGTCAAAAATAGAATAACAAAACCACTTTTCTCCTCTGTCGTCATCTCGCTTTTTTCTCAATTTTTAGACTAAAAGCTCTTCCGAAAAAAAGAGAACTTTTTTTTGACATATCCGTATATTTTTTTCACTTTTCACTCTGATGACAAATTTTTAAATGTTTTTGAGACGAAAGTTTTTCTTTTTGGTTTTCCGCTTGAATTGTGTCATTTTTTACTTCTTTTTTGAAGAAAAACACAAAAGTGGTTTTTGTTTTAATTTTTGATTGAATTCCCGATTCTTGAGATTTGAAAAACAATGAAGATGAATCCTATAATTAAATTTGCCAAAGTTTAGAATATCAAAATTTCAGAATTTCTAAATTCTAGAACTTTTTGTTCCTATTCTTGAATTTTCTGATTTTCTAATTTTGTTTTCTGACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNNNGTC</site>
                <isoschizomers>
                    <enzyme>AhdI</enzyme>
                    <enzyme>AspEI</enzyme>
                    <enzyme>Eam1105I</enzyme>
                    <enzyme>EclHKI</enzyme>
                    <enzyme>NruGI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 212 208 78</canonical_bands>
                <polymorphic_bands>580 212 208</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAGACATTCGGAGTCACTA</pcr_primer_p1>
		<pcr_primer_p2>CAGGACAGAAGAAAAACTAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>494</pcr_amplicon_size>
		<canonical_amplicon>GGAGACATTCGGAGTCACTAATATCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTGGTGATATCATGATAAATATTCTATCAGTTGACAGTTGTTTGATATCTTTCACATGAATCGAGATAATTTAGCTCAAAGTCCAAGTGTAGGGTCCGTAAACAGTAGTAGAAAGATTCCCTAACTTTTAACTTTTAACTCTATTATCTCGGTTCCTATAAGAATGATAAAAAATCTGTCAACTGATAAAATATTTTTGATAATATCACCAACATTTTATCAATTGACAAATTTTTGATATCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTTTTTCCGATCGCCTAAATTATGACCAATGAAGATTTTTCTCTCTCCCAAAGGATCCTCGACAAATAGTCCACTCATTTTTGTTCCTCGCTCCTCCTTGTTCCTTTCTTCGCTTTTCTTAGTTTTTCTTCTGTCCTG</canonical_amplicon>
		<polymorphic_amplicon>GGAGACATTCGGAGTCACTAATATCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTGGTGATATCATGATAAATATTCTATCAGTTGACAGTTGTTTGATATCTTTCACATGAATCGAGATAATTTAGCTCAAAGTCCAAGTGTAGGGTCCGTAAACAGTAGTAGAAAGATTCCCTAACTTTTAACTTTTAACTCTATTATCTCGGTTCCTATAAGAATGATAAAAAATCTGTCAACTGATAAAATATTTTTGATAATATCACCAACATTTTATCAATTGACAAATTTTTGATATCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTTTTTCCGATCGCCTAAATTATGACCAATGAAGATTTTTCTCTCTCCCAAAGGATCCTCGRCAAATAGTCCACTCATTTTTGTTCCTCGCTCCTCCTTGTTCCTTTCTTCGCTTTTCTTAGTTTTTCTTCTGTCCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6497</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>256847</contig_pos>
        <strand>+</strand>
        <context>GATTTTTCTC[A/T]CTCCCAAAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGTTATTTTTTTCCGATCGCCTAAATTATGACCAATGAAGATTTTTCTC</left_flank>
        <right_flank>CTCCCAAAGGATCCTCGACAAATAGTCCACTCATTTTTGTTCCTCGCTCC</right_flank>
        <qual_score>134</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTTCCAGAACTCTCTGACAGTATCCCATTTCATAGTTCAAACTGGGTGACCGAATGGCGGACTAACGGCGGCCGAGTGCTATTAAGAAAGGAAGAGAGGAGACATTCGGAGTCACTAATATCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTGGTGATATCATGATAAATATTCTATCAGTTGACAGTTGTTTGATATCTTTCACATGAATCGAGATAATTTAGCTCAAAGTCCAAGTGTAGGGTCCGTAAACAGTAGTAGAAAGATTCCCTAACTTTTAACTTTTAACTCTATTATCTCGGTTCCTATAAGAATGATAAAAAATCTGTCAACTGATAAAATATTTTTGATAATATCACCAACATTTTATCAATTGACAAATTTTTGATATCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTTTTTCCGATCGCCTAAATTATGACCAATGAAGATTTTTCTCTCTCCCAAAGGATCCTCGACAAATAGTCCACTCATTTTTGTTCCTCGCTCCTCCTTGTTCCTTTCTTCGCTTTTCTTAGTTTTTCTTCTGTCCTGTTTATGTCAAAAATAGAATAACAAAACCACTTTTCTCCTCTGTCGTCATCTCGCTTTTTTCTCAATTTTTAGACTAAAAGCTCTTCCGAAAAAAAGAGAACTTTTTTTTGACATATCCGTATATTTTTTTCACTTTTCACTCTGATGACAAATTTTTAAATGTTTTTGAGACGAAAGTTTTTCTTTTTGGTTTTCCGCTTGAATTGTGTCATTTTTTACTTCTTTTTTGAAGAAAAACACAAAAGTGGTTTTTGTTTTAATTTTTGATTGAATTCCCGATTCTTGAGATTTGAAAAACAATGAAGATGAATCCTATAATTAAATTTGCCAAAGTTTAGAATATCAAAATTTCAGAATTTCTAAATTCTAGAACTTTTTGTTCCTATTCTTGAATTTTCTGATTTTC</canonical>
            <polymorphic>CAATTTCCAGAACTCTCTGACAGTATCCCATTTCATAGTTCAAACTGGGTGACCGAATGGCGGACTAACGGCGGCCGAGTGCTATTAAGAAAGGAAGAGAGGAGACATTCGGAGTCACTAATATCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTGGTGATATCATGATAAATATTCTATCAGTTGACAGTTGTTTGATATCTTTCACATGAATCGAGATAATTTAGCTCAAAGTCCAAGTGTAGGGTCCGTAAACAGTAGTAGAAAGATTCCCTAACTTTTAACTTTTAACTCTATTATCTCGGTTCCTATAAGAATGATAAAAAATCTGTCAACTGATAAAATATTTTTGATAATATCACCAACATTTTATCAATTGACAAATTTTTGATATCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTTTTTCCGATCGCCTAAATTATGACCAATGAAGATTTTTCTCWCTCCCAAAGGATCCTCGACAAATAGTCCACTCATTTTTGTTCCTCGCTCCTCCTTGTTCCTTTCTTCGCTTTTCTTAGTTTTTCTTCTGTCCTGTTTATGTCAAAAATAGAATAACAAAACCACTTTTCTCCTCTGTCGTCATCTCGCTTTTTTCTCAATTTTTAGACTAAAAGCTCTTCCGAAAAAAAGAGAACTTTTTTTTGACATATCCGTATATTTTTTTCACTTTTCACTCTGATGACAAATTTTTAAATGTTTTTGAGACGAAAGTTTTTCTTTTTGGTTTTCCGCTTGAATTGTGTCATTTTTTACTTCTTTTTTGAAGAAAAACACAAAAGTGGTTTTTGTTTTAATTTTTGATTGAATTCCCGATTCTTGAGATTTGAAAAACAATGAAGATGAATCCTATAATTAAATTTGCCAAAGTTTAGAATATCAAAATTTCAGAATTTCTAAATTCTAGAACTTTTTGTTCCTATTCTTGAATTTTCTGATTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGACATTCGGAGTCACTA</pcr_primer_p1>
		<pcr_primer_p2>AAGAAAGGAACAAGGAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>466</pcr_amplicon_size>
		<canonical_amplicon>GGAGACATTCGGAGTCACTAATATCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTGGTGATATCATGATAAATATTCTATCAGTTGACAGTTGTTTGATATCTTTCACATGAATCGAGATAATTTAGCTCAAAGTCCAAGTGTAGGGTCCGTAAACAGTAGTAGAAAGATTCCCTAACTTTTAACTTTTAACTCTATTATCTCGGTTCCTATAAGAATGATAAAAAATCTGTCAACTGATAAAATATTTTTGATAATATCACCAACATTTTATCAATTGACAAATTTTTGATATCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTTTTTCCGATCGCCTAAATTATGACCAATGAAGATTTTTCTCTCTCCCAAAGGATCCTCGACAAATAGTCCACTCATTTTTGTTCCTCGCTCCTCCTTGTTCCTTTCTT</canonical_amplicon>
		<polymorphic_amplicon>GGAGACATTCGGAGTCACTAATATCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTGGTGATATCATGATAAATATTCTATCAGTTGACAGTTGTTTGATATCTTTCACATGAATCGAGATAATTTAGCTCAAAGTCCAAGTGTAGGGTCCGTAAACAGTAGTAGAAAGATTCCCTAACTTTTAACTTTTAACTCTATTATCTCGGTTCCTATAAGAATGATAAAAAATCTGTCAACTGATAAAATATTTTTGATAATATCACCAACATTTTATCAATTGACAAATTTTTGATATCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTTTTTCCGATCGCCTAAATTATGACCAATGAAGATTTTTCTCWCTCCCAAAGGATCCTCGACAAATAGTCCACTCATTTTTGTTCCTCGCTCCTCCTTGTTCCTTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6498</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>256833</contig_pos>
        <strand>+</strand>
        <context>TTATGACCAA[G/T]GAAGATTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCGAAGTTGACAGTTGTTATTTTTTTCCGATCGCCTAAATTATGACCAA</left_flank>
        <right_flank>GAAGATTTTTCTCTCTCCCAAAGGATCCTCGACAAATAGTCCACTCATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAAACCTGAACCCAATTTCCAGAACTCTCTGACAGTATCCCATTTCATAGTTCAAACTGGGTGACCGAATGGCGGACTAACGGCGGCCGAGTGCTATTAAGAAAGGAAGAGAGGAGACATTCGGAGTCACTAATATCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTGGTGATATCATGATAAATATTCTATCAGTTGACAGTTGTTTGATATCTTTCACATGAATCGAGATAATTTAGCTCAAAGTCCAAGTGTAGGGTCCGTAAACAGTAGTAGAAAGATTCCCTAACTTTTAACTTTTAACTCTATTATCTCGGTTCCTATAAGAATGATAAAAAATCTGTCAACTGATAAAATATTTTTGATAATATCACCAACATTTTATCAATTGACAAATTTTTGATATCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTTTTTCCGATCGCCTAAATTATGACCAATGAAGATTTTTCTCTCTCCCAAAGGATCCTCGACAAATAGTCCACTCATTTTTGTTCCTCGCTCCTCCTTGTTCCTTTCTTCGCTTTTCTTAGTTTTTCTTCTGTCCTGTTTATGTCAAAAATAGAATAACAAAACCACTTTTCTCCTCTGTCGTCATCTCGCTTTTTTCTCAATTTTTAGACTAAAAGCTCTTCCGAAAAAAAGAGAACTTTTTTTTGACATATCCGTATATTTTTTTCACTTTTCACTCTGATGACAAATTTTTAAATGTTTTTGAGACGAAAGTTTTTCTTTTTGGTTTTCCGCTTGAATTGTGTCATTTTTTACTTCTTTTTTGAAGAAAAACACAAAAGTGGTTTTTGTTTTAATTTTTGATTGAATTCCCGATTCTTGAGATTTGAAAAACAATGAAGATGAATCCTATAATTAAATTTGCCAAAGTTTAGAATATCAAAATTTCAGAATTTCTAAATTCTAGAACTTTTTGTTCCTATTCTTGA</canonical>
            <polymorphic>AATAAACCTGAACCCAATTTCCAGAACTCTCTGACAGTATCCCATTTCATAGTTCAAACTGGGTGACCGAATGGCGGACTAACGGCGGCCGAGTGCTATTAAGAAAGGAAGAGAGGAGACATTCGGAGTCACTAATATCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTGGTGATATCATGATAAATATTCTATCAGTTGACAGTTGTTTGATATCTTTCACATGAATCGAGATAATTTAGCTCAAAGTCCAAGTGTAGGGTCCGTAAACAGTAGTAGAAAGATTCCCTAACTTTTAACTTTTAACTCTATTATCTCGGTTCCTATAAGAATGATAAAAAATCTGTCAACTGATAAAATATTTTTGATAATATCACCAACATTTTATCAATTGACAAATTTTTGATATCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTTTTTCCGATCGCCTAAATTATGACCAAKGAAGATTTTTCTCTCTCCCAAAGGATCCTCGACAAATAGTCCACTCATTTTTGTTCCTCGCTCCTCCTTGTTCCTTTCTTCGCTTTTCTTAGTTTTTCTTCTGTCCTGTTTATGTCAAAAATAGAATAACAAAACCACTTTTCTCCTCTGTCGTCATCTCGCTTTTTTCTCAATTTTTAGACTAAAAGCTCTTCCGAAAAAAAGAGAACTTTTTTTTGACATATCCGTATATTTTTTTCACTTTTCACTCTGATGACAAATTTTTAAATGTTTTTGAGACGAAAGTTTTTCTTTTTGGTTTTCCGCTTGAATTGTGTCATTTTTTACTTCTTTTTTGAAGAAAAACACAAAAGTGGTTTTTGTTTTAATTTTTGATTGAATTCCCGATTCTTGAGATTTGAAAAACAATGAAGATGAATCCTATAATTAAATTTGCCAAAGTTTAGAATATCAAAATTTCAGAATTTCTAAATTCTAGAACTTTTTGTTCCTATTCTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGACATTCGGAGTCACTA</pcr_primer_p1>
		<pcr_primer_p2>AGGAACAAAAATGAGTGGACTA</pcr_primer_p2>
		<pcr_amplicon_size>444</pcr_amplicon_size>
		<canonical_amplicon>GGAGACATTCGGAGTCACTAATATCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTGGTGATATCATGATAAATATTCTATCAGTTGACAGTTGTTTGATATCTTTCACATGAATCGAGATAATTTAGCTCAAAGTCCAAGTGTAGGGTCCGTAAACAGTAGTAGAAAGATTCCCTAACTTTTAACTTTTAACTCTATTATCTCGGTTCCTATAAGAATGATAAAAAATCTGTCAACTGATAAAATATTTTTGATAATATCACCAACATTTTATCAATTGACAAATTTTTGATATCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTTTTTCCGATCGCCTAAATTATGACCAATGAAGATTTTTCTCTCTCCCAAAGGATCCTCGACAAATAGTCCACTCATTTTTGTTCCT</canonical_amplicon>
		<polymorphic_amplicon>GGAGACATTCGGAGTCACTAATATCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTGGTGATATCATGATAAATATTCTATCAGTTGACAGTTGTTTGATATCTTTCACATGAATCGAGATAATTTAGCTCAAAGTCCAAGTGTAGGGTCCGTAAACAGTAGTAGAAAGATTCCCTAACTTTTAACTTTTAACTCTATTATCTCGGTTCCTATAAGAATGATAAAAAATCTGTCAACTGATAAAATATTTTTGATAATATCACCAACATTTTATCAATTGACAAATTTTTGATATCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTTTTTCCGATCGCCTAAATTATGACCAAKGAAGATTTTTCTCTCTCCCAAAGGATCCTCGACAAATAGTCCACTCATTTTTGTTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6499</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>256818</contig_pos>
        <strand>+</strand>
        <context>TTCCGATCGC[C/T]TAAATTATGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTTTTTCCGATCGC</left_flank>
        <right_flank>TAAATTATGACCAATGAAGATTTTTCTCTCTCCCAAAGGATCCTCGACAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATTCGGAATAAAAATAAACCTGAACCCAATTTCCAGAACTCTCTGACAGTATCCCATTTCATAGTTCAAACTGGGTGACCGAATGGCGGACTAACGGCGGCCGAGTGCTATTAAGAAAGGAAGAGAGGAGACATTCGGAGTCACTAATATCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTGGTGATATCATGATAAATATTCTATCAGTTGACAGTTGTTTGATATCTTTCACATGAATCGAGATAATTTAGCTCAAAGTCCAAGTGTAGGGTCCGTAAACAGTAGTAGAAAGATTCCCTAACTTTTAACTTTTAACTCTATTATCTCGGTTCCTATAAGAATGATAAAAAATCTGTCAACTGATAAAATATTTTTGATAATATCACCAACATTTTATCAATTGACAAATTTTTGATATCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTTTTTCCGATCGCCTAAATTATGACCAATGAAGATTTTTCTCTCTCCCAAAGGATCCTCGACAAATAGTCCACTCATTTTTGTTCCTCGCTCCTCCTTGTTCCTTTCTTCGCTTTTCTTAGTTTTTCTTCTGTCCTGTTTATGTCAAAAATAGAATAACAAAACCACTTTTCTCCTCTGTCGTCATCTCGCTTTTTTCTCAATTTTTAGACTAAAAGCTCTTCCGAAAAAAAGAGAACTTTTTTTTGACATATCCGTATATTTTTTTCACTTTTCACTCTGATGACAAATTTTTAAATGTTTTTGAGACGAAAGTTTTTCTTTTTGGTTTTCCGCTTGAATTGTGTCATTTTTTACTTCTTTTTTGAAGAAAAACACAAAAGTGGTTTTTGTTTTAATTTTTGATTGAATTCCCGATTCTTGAGATTTGAAAAACAATGAAGATGAATCCTATAATTAAATTTGCCAAAGTTTAGAATATCAAAATTTCAGAATTTCTAAATTCTAGAACTTTT</canonical>
            <polymorphic>AGAATTCGGAATAAAAATAAACCTGAACCCAATTTCCAGAACTCTCTGACAGTATCCCATTTCATAGTTCAAACTGGGTGACCGAATGGCGGACTAACGGCGGCCGAGTGCTATTAAGAAAGGAAGAGAGGAGACATTCGGAGTCACTAATATCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTGGTGATATCATGATAAATATTCTATCAGTTGACAGTTGTTTGATATCTTTCACATGAATCGAGATAATTTAGCTCAAAGTCCAAGTGTAGGGTCCGTAAACAGTAGTAGAAAGATTCCCTAACTTTTAACTTTTAACTCTATTATCTCGGTTCCTATAAGAATGATAAAAAATCTGTCAACTGATAAAATATTTTTGATAATATCACCAACATTTTATCAATTGACAAATTTTTGATATCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTTTTTCCGATCGCYTAAATTATGACCAATGAAGATTTTTCTCTCTCCCAAAGGATCCTCGACAAATAGTCCACTCATTTTTGTTCCTCGCTCCTCCTTGTTCCTTTCTTCGCTTTTCTTAGTTTTTCTTCTGTCCTGTTTATGTCAAAAATAGAATAACAAAACCACTTTTCTCCTCTGTCGTCATCTCGCTTTTTTCTCAATTTTTAGACTAAAAGCTCTTCCGAAAAAAAGAGAACTTTTTTTTGACATATCCGTATATTTTTTTCACTTTTCACTCTGATGACAAATTTTTAAATGTTTTTGAGACGAAAGTTTTTCTTTTTGGTTTTCCGCTTGAATTGTGTCATTTTTTACTTCTTTTTTGAAGAAAAACACAAAAGTGGTTTTTGTTTTAATTTTTGATTGAATTCCCGATTCTTGAGATTTGAAAAACAATGAAGATGAATCCTATAATTAAATTTGCCAAAGTTTAGAATATCAAAATTTCAGAATTTCTAAATTCTAGAACTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGACATTCGGAGTCACTA</pcr_primer_p1>
		<pcr_primer_p2>AGGAACAAAAATGAGTGGACTA</pcr_primer_p2>
		<pcr_amplicon_size>444</pcr_amplicon_size>
		<canonical_amplicon>GGAGACATTCGGAGTCACTAATATCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTGGTGATATCATGATAAATATTCTATCAGTTGACAGTTGTTTGATATCTTTCACATGAATCGAGATAATTTAGCTCAAAGTCCAAGTGTAGGGTCCGTAAACAGTAGTAGAAAGATTCCCTAACTTTTAACTTTTAACTCTATTATCTCGGTTCCTATAAGAATGATAAAAAATCTGTCAACTGATAAAATATTTTTGATAATATCACCAACATTTTATCAATTGACAAATTTTTGATATCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTTTTTCCGATCGCCTAAATTATGACCAATGAAGATTTTTCTCTCTCCCAAAGGATCCTCGACAAATAGTCCACTCATTTTTGTTCCT</canonical_amplicon>
		<polymorphic_amplicon>GGAGACATTCGGAGTCACTAATATCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTGGTGATATCATGATAAATATTCTATCAGTTGACAGTTGTTTGATATCTTTCACATGAATCGAGATAATTTAGCTCAAAGTCCAAGTGTAGGGTCCGTAAACAGTAGTAGAAAGATTCCCTAACTTTTAACTTTTAACTCTATTATCTCGGTTCCTATAAGAATGATAAAAAATCTGTCAACTGATAAAATATTTTTGATAATATCACCAACATTTTATCAATTGACAAATTTTTGATATCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTTTTTCCGATCGCYTAAATTATGACCAATGAAGATTTTTCTCTCTCCCAAAGGATCCTCGACAAATAGTCCACTCATTTTTGTTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6500</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>256806</contig_pos>
        <strand>+</strand>
        <context>gtTGTTATTT[C/T]TTTCCGATCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTT</left_flank>
        <right_flank>TTTCCGATCGCCTAAATTATGACCAATGAAGATTTTTCTCTCTCCCAAAG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCGGTTTTTTGAGAATTCGGAATAAAAATAAACCTGAACCCAATTTCCAGAACTCTCTGACAGTATCCCATTTCATAGTTCAAACTGGGTGACCGAATGGCGGACTAACGGCGGCCGAGTGCTATTAAGAAAGGAAGAGAGGAGACATTCGGAGTCACTAATATCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTGGTGATATCATGATAAATATTCTATCAGTTGACAGTTGTTTGATATCTTTCACATGAATCGAGATAATTTAGCTCAAAGTCCAAGTGTAGGGTCCGTAAACAGTAGTAGAAAGATTCCCTAACTTTTAACTTTTAACTCTATTATCTCGGTTCCTATAAGAATGATAAAAAATCTGTCAACTGATAAAATATTTTTGATAATATCACCAACATTTTATCAATTGACAAATTTTTGATATCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTTTTTCCGATCGCCTAAATTATGACCAATGAAGATTTTTCTCTCTCCCAAAGGATCCTCGACAAATAGTCCACTCATTTTTGTTCCTCGCTCCTCCTTGTTCCTTTCTTCGCTTTTCTTAGTTTTTCTTCTGTCCTGTTTATGTCAAAAATAGAATAACAAAACCACTTTTCTCCTCTGTCGTCATCTCGCTTTTTTCTCAATTTTTAGACTAAAAGCTCTTCCGAAAAAAAGAGAACTTTTTTTTGACATATCCGTATATTTTTTTCACTTTTCACTCTGATGACAAATTTTTAAATGTTTTTGAGACGAAAGTTTTTCTTTTTGGTTTTCCGCTTGAATTGTGTCATTTTTTACTTCTTTTTTGAAGAAAAACACAAAAGTGGTTTTTGTTTTAATTTTTGATTGAATTCCCGATTCTTGAGATTTGAAAAACAATGAAGATGAATCCTATAATTAAATTTGCCAAAGTTTAGAATATCAAAATTTCAGAATTTCTAAAT</canonical>
            <polymorphic>TCCGGTTTTTTGAGAATTCGGAATAAAAATAAACCTGAACCCAATTTCCAGAACTCTCTGACAGTATCCCATTTCATAGTTCAAACTGGGTGACCGAATGGCGGACTAACGGCGGCCGAGTGCTATTAAGAAAGGAAGAGAGGAGACATTCGGAGTCACTAATATCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTGGTGATATCATGATAAATATTCTATCAGTTGACAGTTGTTTGATATCTTTCACATGAATCGAGATAATTTAGCTCAAAGTCCAAGTGTAGGGTCCGTAAACAGTAGTAGAAAGATTCCCTAACTTTTAACTTTTAACTCTATTATCTCGGTTCCTATAAGAATGATAAAAAATCTGTCAACTGATAAAATATTTTTGATAATATCACCAACATTTTATCAATTGACAAATTTTTGATATCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTYTTTCCGATCGCCTAAATTATGACCAATGAAGATTTTTCTCTCTCCCAAAGGATCCTCGACAAATAGTCCACTCATTTTTGTTCCTCGCTCCTCCTTGTTCCTTTCTTCGCTTTTCTTAGTTTTTCTTCTGTCCTGTTTATGTCAAAAATAGAATAACAAAACCACTTTTCTCCTCTGTCGTCATCTCGCTTTTTTCTCAATTTTTAGACTAAAAGCTCTTCCGAAAAAAAGAGAACTTTTTTTTGACATATCCGTATATTTTTTTCACTTTTCACTCTGATGACAAATTTTTAAATGTTTTTGAGACGAAAGTTTTTCTTTTTGGTTTTCCGCTTGAATTGTGTCATTTTTTACTTCTTTTTTGAAGAAAAACACAAAAGTGGTTTTTGTTTTAATTTTTGATTGAATTCCCGATTCTTGAGATTTGAAAAACAATGAAGATGAATCCTATAATTAAATTTGCCAAAGTTTAGAATATCAAAATTTCAGAATTTCTAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGACATTCGGAGTCACTA</pcr_primer_p1>
		<pcr_primer_p2>AGGAACAAAAATGAGTGGACTA</pcr_primer_p2>
		<pcr_amplicon_size>444</pcr_amplicon_size>
		<canonical_amplicon>GGAGACATTCGGAGTCACTAATATCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTGGTGATATCATGATAAATATTCTATCAGTTGACAGTTGTTTGATATCTTTCACATGAATCGAGATAATTTAGCTCAAAGTCCAAGTGTAGGGTCCGTAAACAGTAGTAGAAAGATTCCCTAACTTTTAACTTTTAACTCTATTATCTCGGTTCCTATAAGAATGATAAAAAATCTGTCAACTGATAAAATATTTTTGATAATATCACCAACATTTTATCAATTGACAAATTTTTGATATCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTTTTTCCGATCGCCTAAATTATGACCAATGAAGATTTTTCTCTCTCCCAAAGGATCCTCGACAAATAGTCCACTCATTTTTGTTCCT</canonical_amplicon>
		<polymorphic_amplicon>GGAGACATTCGGAGTCACTAATATCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTGGTGATATCATGATAAATATTCTATCAGTTGACAGTTGTTTGATATCTTTCACATGAATCGAGATAATTTAGCTCAAAGTCCAAGTGTAGGGTCCGTAAACAGTAGTAGAAAGATTCCCTAACTTTTAACTTTTAACTCTATTATCTCGGTTCCTATAAGAATGATAAAAAATCTGTCAACTGATAAAATATTTTTGATAATATCACCAACATTTTATCAATTGACAAATTTTTGATATCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTYTTTCCGATCGCCTAAATTATGACCAATGAAGATTTTTCTCTCTCCCAAAGGATCCTCGACAAATAGTCCACTCATTTTTGTTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6501</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>283006</contig_pos>
        <strand>+</strand>
        <context>ATTAGGATGA[A/G]KATAATTAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATATCACAGAATGAAAGACGATTTTTAGAGATTTGCGTAATTAGGATGA</left_flank>
        <right_flank>GATAATTAAAATAATTAAGAAGACAATTAAGTATTAAATTGAAAATAAAT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAATTTTCGTTTTCAGCATTTTCAAATTTTTGAAAATTTCAAGAACCCTCAAATCTCAAAAAGATCCTATTCCGAAAACATCAAAATTCCAAAACTACTTTTCCAGAACCATGCCTTCTCGATTCGCCAGTTTCGACCGTAACCTTCGTCGCCTCCGTCAGACTTCCAGTCCGGATTACGTGAAATTCCAGAATATTCTGGCGAGCTGTATAAAGTTTGTCGACAACAACGCCGAATTCGAATGGGATGTGTTGGGTGTTTAAAATTGAGAGAACTCAAAATACTGACATGAAAAACTTGAATAAATGGTTTATAAGTGTTTTCATTTTTTGAATTTTTAAGTATTTGAAACTCAATTATAAATCAATAAACTGGAGAAATAAAAATGTGTTTATATAAAAATTTAAAAATTTCAATCAATGCATAAATAAAATAATAAATGATATCATATCACAGAATGAAAGACGATTTTTAGAGATTTGCGTAATTAGGATGAGGATAATTAAAATAATTAAGAAGACAATTAAGTATTAAATTGAAAATAAATTATTCAGTTGGTCTTTGTACACTTTTTTGACTAGCATTGGGAATTCAGCTATACGGATTTCAGCACCAACTACACGGTGTCTAGGAGGACTCTTCTAGAAAAAGAAAGTCAAAGAATATTGAGCATTTTGGAATGAGTTAGGGGGATGGAGAGGTAAAAACTAATTAAAGGAACACACTCTCAAAAAAGGAATTACTTAAAAATTCGTCCTTGTCTGGAAAGAGCGTCCGGGCGGTTTGGTTGACTGTAAGTGGGGACGTTGTAGTTGACTGGTTCGACGTCTGGACGATAGGCTGATGGAGAACCCTGGAAATTACGAATTCAGTATTTTTTTTTGAATTATTGAAAATTTCAAAAGTATCAAATGGATCTGTGAAAGTTTCTAAACTTCAGAAAAATTCCGAAGTTTGGAAATAATGGGACTATCAGCATAAAGTTAATGTATCTGAG</canonical>
            <polymorphic>CAAAAATTTTCGTTTTCAGCATTTTCAAATTTTTGAAAATTTCAAGAACCCTCAAATCTCAAAAAGATCCTATTCCGAAAACATCAAAATTCCAAAACTACTTTTCCAGAACCATGCCTTCTCGATTCGCCAGTTTCGACCGTAACCTTCGTCGCCTCCGTCAGACTTCCAGTCCGGATTACGTGAAATTCCAGAATATTCTGGCGAGCTGTATAAAGTTTGTCGACAACAACGCCGAATTCGAATGGGATGTGTTGGGTGTTTAAAATTGAGAGAACTCAAAATACTGACATGAAAAACTTGAATAAATGGTTTATAAGTGTTTTCATTTTTTGAATTTTTAAGTATTTGAAACTCAATTATAAATCAATAAACTGGAGAAATAAAAATGTGTTTATATAAAAATTTAAAAATTTCAATCAATGCATAAATAAAATAATAAATGATATCATATCACAGAATGAAAGACGATTTTTAGAGATTTGCGTAATTAGGATGARGATAATTAAAATAATTAAGAAGACAATTAAGTATTAAATTGAAAATAAATTATTCAGTTGGTCTTTGTACACTTTTTTGACTAGCATTGGGAATTCAGCTATACGGATTTCAGCACCAACTACACGGTGTCTAGGAGGACTCTTCTAGAAAAAGAAAGTCAAAGAATATTGAGCATTTTGGAATGAGTTAGGGGGATGGAGAGGTAAAAACTAATTAAAGGAACACACTCTCAAAAAAGGAATTACTTAAAAATTCGTCCTTGTCTGGAAAGAGCGTCCGGGCGGTTTGGTTGACTGTAAGTGGGGACGTTGTAGTTGACTGGTTCGACGTCTGGACGATAGGCTGATGGAGAACCCTGGAAATTACGAATTCAGTATTTTTTTTTGAATTATTGAAAATTTCAAAAGTATCAAATGGATCTGTGAAAGTTTCTAAACTTCAGAAAAATTCCGAAGTTTGGAAATAATGGGACTATCAGCATAAAGTTAATGTATCTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAAACTGGAGAAATAAAAATGTG</pcr_primer_p1>
		<pcr_primer_p2>TGGTGCTGAAATCCGTATAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATAAACTGGAGAAATAAAAATGTGTTTATATAAAAATTTAAAAATTTCAATCAATGCATAAATAAAATAATAAATGATATCATATCACAGAATGAAAGACGATTTTTAGAGATTTGCGTAATTAGGATGAGGATAATTAAAATAATTAAGAAGACAATTAAGTATTAAATTGAAAATAAATTATTCAGTTGGTCTTTGTACACTTTTTTGACTAGCATTGGGAATTCAGCTATACGGATTTCAGCACCA</canonical_amplicon>
		<polymorphic_amplicon>AATAAACTGGAGAAATAAAAATGTGTTTATATAAAAATTTAAAAATTTCAATCAATGCATAAATAAAATAATAAATGATATCATATCACAGAATGAAAGACGATTTTTAGAGATTTGCGTAATTAGGATGARGATAATTAAAATAATTAAGAAGACAATTAAGTATTAAATTGAAAATAAATTATTCAGTTGGTCTTTGTACACTTTTTTGACTAGCATTGGGAATTCAGCTATACGGATTTCAGCACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6502</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>283007</contig_pos>
        <strand>+</strand>
        <context>TTAGGATGAR[G/T]ATAATTAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATATCACAGAATGAAAGACGATTTTTAGAGATTTGCGTAATTAGGATGAG</left_flank>
        <right_flank>ATAATTAAAATAATTAAGAAGACAATTAAGTATTAAATTGAAAATAAATT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATTTTCGTTTTCAGCATTTTCAAATTTTTGAAAATTTCAAGAACCCTCAAATCTCAAAAAGATCCTATTCCGAAAACATCAAAATTCCAAAACTACTTTTCCAGAACCATGCCTTCTCGATTCGCCAGTTTCGACCGTAACCTTCGTCGCCTCCGTCAGACTTCCAGTCCGGATTACGTGAAATTCCAGAATATTCTGGCGAGCTGTATAAAGTTTGTCGACAACAACGCCGAATTCGAATGGGATGTGTTGGGTGTTTAAAATTGAGAGAACTCAAAATACTGACATGAAAAACTTGAATAAATGGTTTATAAGTGTTTTCATTTTTTGAATTTTTAAGTATTTGAAACTCAATTATAAATCAATAAACTGGAGAAATAAAAATGTGTTTATATAAAAATTTAAAAATTTCAATCAATGCATAAATAAAATAATAAATGATATCATATCACAGAATGAAAGACGATTTTTAGAGATTTGCGTAATTAGGATGAGGATAATTAAAATAATTAAGAAGACAATTAAGTATTAAATTGAAAATAAATTATTCAGTTGGTCTTTGTACACTTTTTTGACTAGCATTGGGAATTCAGCTATACGGATTTCAGCACCAACTACACGGTGTCTAGGAGGACTCTTCTAGAAAAAGAAAGTCAAAGAATATTGAGCATTTTGGAATGAGTTAGGGGGATGGAGAGGTAAAAACTAATTAAAGGAACACACTCTCAAAAAAGGAATTACTTAAAAATTCGTCCTTGTCTGGAAAGAGCGTCCGGGCGGTTTGGTTGACTGTAAGTGGGGACGTTGTAGTTGACTGGTTCGACGTCTGGACGATAGGCTGATGGAGAACCCTGGAAATTACGAATTCAGTATTTTTTTTTGAATTATTGAAAATTTCAAAAGTATCAAATGGATCTGTGAAAGTTTCTAAACTTCAGAAAAATTCCGAAGTTTGGAAATAATGGGACTATCAGCATAAAGTTAATGTATCTGAGT</canonical>
            <polymorphic>AAAAATTTTCGTTTTCAGCATTTTCAAATTTTTGAAAATTTCAAGAACCCTCAAATCTCAAAAAGATCCTATTCCGAAAACATCAAAATTCCAAAACTACTTTTCCAGAACCATGCCTTCTCGATTCGCCAGTTTCGACCGTAACCTTCGTCGCCTCCGTCAGACTTCCAGTCCGGATTACGTGAAATTCCAGAATATTCTGGCGAGCTGTATAAAGTTTGTCGACAACAACGCCGAATTCGAATGGGATGTGTTGGGTGTTTAAAATTGAGAGAACTCAAAATACTGACATGAAAAACTTGAATAAATGGTTTATAAGTGTTTTCATTTTTTGAATTTTTAAGTATTTGAAACTCAATTATAAATCAATAAACTGGAGAAATAAAAATGTGTTTATATAAAAATTTAAAAATTTCAATCAATGCATAAATAAAATAATAAATGATATCATATCACAGAATGAAAGACGATTTTTAGAGATTTGCGTAATTAGGATGAGKATAATTAAAATAATTAAGAAGACAATTAAGTATTAAATTGAAAATAAATTATTCAGTTGGTCTTTGTACACTTTTTTGACTAGCATTGGGAATTCAGCTATACGGATTTCAGCACCAACTACACGGTGTCTAGGAGGACTCTTCTAGAAAAAGAAAGTCAAAGAATATTGAGCATTTTGGAATGAGTTAGGGGGATGGAGAGGTAAAAACTAATTAAAGGAACACACTCTCAAAAAAGGAATTACTTAAAAATTCGTCCTTGTCTGGAAAGAGCGTCCGGGCGGTTTGGTTGACTGTAAGTGGGGACGTTGTAGTTGACTGGTTCGACGTCTGGACGATAGGCTGATGGAGAACCCTGGAAATTACGAATTCAGTATTTTTTTTTGAATTATTGAAAATTTCAAAAGTATCAAATGGATCTGTGAAAGTTTCTAAACTTCAGAAAAATTCCGAAGTTTGGAAATAATGGGACTATCAGCATAAAGTTAATGTATCTGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAAACTGGAGAAATAAAAATGTG</pcr_primer_p1>
		<pcr_primer_p2>TGGTGCTGAAATCCGTATAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATAAACTGGAGAAATAAAAATGTGTTTATATAAAAATTTAAAAATTTCAATCAATGCATAAATAAAATAATAAATGATATCATATCACAGAATGAAAGACGATTTTTAGAGATTTGCGTAATTAGGATGAGGATAATTAAAATAATTAAGAAGACAATTAAGTATTAAATTGAAAATAAATTATTCAGTTGGTCTTTGTACACTTTTTTGACTAGCATTGGGAATTCAGCTATACGGATTTCAGCACCA</canonical_amplicon>
		<polymorphic_amplicon>AATAAACTGGAGAAATAAAAATGTGTTTATATAAAAATTTAAAAATTTCAATCAATGCATAAATAAAATAATAAATGATATCATATCACAGAATGAAAGACGATTTTTAGAGATTTGCGTAATTAGGATGAGKATAATTAAAATAATTAAGAAGACAATTAAGTATTAAATTGAAAATAAATTATTCAGTTGGTCTTTGTACACTTTTTTGACTAGCATTGGGAATTCAGCTATACGGATTTCAGCACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6503</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>283174</contig_pos>
        <strand>+</strand>
        <context>GTCAAAGAAT[A/T]TTGAGCATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACTACACGGTGTCTAGGAGGACTCTTCTAGAAAAAGAAAGTCAAAGAAT</left_flank>
        <right_flank>TTGAGCATTTTGGAATGAGTTAGGGGGATGGAGAGGTAAAAACTAATTAA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGTCCGGATTACGTGAAATTCCAGAATATTCTGGCGAGCTGTATAAAGTTTGTCGACAACAACGCCGAATTCGAATGGGATGTGTTGGGTGTTTAAAATTGAGAGAACTCAAAATACTGACATGAAAAACTTGAATAAATGGTTTATAAGTGTTTTCATTTTTTGAATTTTTAAGTATTTGAAACTCAATTATAAATCAATAAACTGGAGAAATAAAAATGTGTTTATATAAAAATTTAAAAATTTCAATCAATGCATAAATAAAATAATAAATGATATCATATCACAGAATGAAAGACGATTTTTAGAGATTTGCGTAATTAGGATGAGGATAATTAAAATAATTAAGAAGACAATTAAGTATTAAATTGAAAATAAATTATTCAGTTGGTCTTTGTACACTTTTTTGACTAGCATTGGGAATTCAGCTATACGGATTTCAGCACCAACTACACGGTGTCTAGGAGGACTCTTCTAGAAAAAGAAAGTCAAAGAATATTGAGCATTTTGGAATGAGTTAGGGGGATGGAGAGGTAAAAACTAATTAAAGGAACACACTCTCAAAAAAGGAATTACTTAAAAATTCGTCCTTGTCTGGAAAGAGCGTCCGGGCGGTTTGGTTGACTGTAAGTGGGGACGTTGTAGTTGACTGGTTCGACGTCTGGACGATAGGCTGATGGAGAACCCTGGAAATTACGAATTCAGTATTTTTTTTTGAATTATTGAAAATTTCAAAAGTATCAAATGGATCTGTGAAAGTTTCTAAACTTCAGAAAAATTCCGAAGTTTGGAAATAATGGGACTATCAGCATAAAGTTAATGTATCTGAGTTACTGTAAGAGATACCAAAAAGGTGTCAATTGACAAAATGGTTATCATAATATTACCAACATTTTACCAGTTGACACATTTTTGATATCTCTCAAATGCACCGAGATAAGTTGACTCAAAGTTAGGTGTACCGTATTTCCTCCTACCATAGGAATTGAGATAATTAA</canonical>
            <polymorphic>CCAGTCCGGATTACGTGAAATTCCAGAATATTCTGGCGAGCTGTATAAAGTTTGTCGACAACAACGCCGAATTCGAATGGGATGTGTTGGGTGTTTAAAATTGAGAGAACTCAAAATACTGACATGAAAAACTTGAATAAATGGTTTATAAGTGTTTTCATTTTTTGAATTTTTAAGTATTTGAAACTCAATTATAAATCAATAAACTGGAGAAATAAAAATGTGTTTATATAAAAATTTAAAAATTTCAATCAATGCATAAATAAAATAATAAATGATATCATATCACAGAATGAAAGACGATTTTTAGAGATTTGCGTAATTAGGATGAGGATAATTAAAATAATTAAGAAGACAATTAAGTATTAAATTGAAAATAAATTATTCAGTTGGTCTTTGTACACTTTTTTGACTAGCATTGGGAATTCAGCTATACGGATTTCAGCACCAACTACACGGTGTCTAGGAGGACTCTTCTAGAAAAAGAAAGTCAAAGAATWTTGAGCATTTTGGAATGAGTTAGGGGGATGGAGAGGTAAAAACTAATTAAAGGAACACACTCTCAAAAAAGGAATTACTTAAAAATTCGTCCTTGTCTGGAAAGAGCGTCCGGGCGGTTTGGTTGACTGTAAGTGGGGACGTTGTAGTTGACTGGTTCGACGTCTGGACGATAGGCTGATGGAGAACCCTGGAAATTACGAATTCAGTATTTTTTTTTGAATTATTGAAAATTTCAAAAGTATCAAATGGATCTGTGAAAGTTTCTAAACTTCAGAAAAATTCCGAAGTTTGGAAATAATGGGACTATCAGCATAAAGTTAATGTATCTGAGTTACTGTAAGAGATACCAAAAAGGTGTCAATTGACAAAATGGTTATCATAATATTACCAACATTTTACCAGTTGACACATTTTTGATATCTCTCAAATGCACCGAGATAAGTTGACTCAAAGTTAGGTGTACCGTATTTCCTCCTACCATAGGAATTGAGATAATTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>470 385 116 29</canonical_bands>
                <polymorphic_bands>855 116 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGATTTGCGTAATTAGGATGA</pcr_primer_p1>
		<pcr_primer_p2>TGTGTTCCTTTAATTAGTTTTTACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGATTTGCGTAATTAGGATGAGGATAATTAAAATAATTAAGAAGACAATTAAGTATTAAATTGAAAATAAATTATTCAGTTGGTCTTTGTACACTTTTTTGACTAGCATTGGGAATTCAGCTATACGGATTTCAGCACCAACTACACGGTGTCTAGGAGGACTCTTCTAGAAAAAGAAAGTCAAAGAATATTGAGCATTTTGGAATGAGTTAGGGGGATGGAGAGGTAAAAACTAATTAAAGGAACACA</canonical_amplicon>
		<polymorphic_amplicon>GAGATTTGCGTAATTAGGATGAGGATAATTAAAATAATTAAGAAGACAATTAAGTATTAAATTGAAAATAAATTATTCAGTTGGTCTTTGTACACTTTTTTGACTAGCATTGGGAATTCAGCTATACGGATTTCAGCACCAACTACACGGTGTCTAGGAGGACTCTTCTAGAAAAAGAAAGTCAAAGAATWTTGAGCATTTTGGAATGAGTTAGGGGGATGGAGAGGTAAAAACTAATTAAAGGAACACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6504</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>283264</contig_pos>
        <strand></strand>
        <context>TAAAAATTCG[T/C]YCTTGTCTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAACTAATTAAAGGAACACACTCTCAAAAAAGGAATTACTTAAAAATTCG</left_flank>
        <right_flank>CCTTGTCTGGAAAGAGCGTCCGGGCGGTTTGGTTGACTGTAAGTGGGGAC</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTTTAAAATTGAGAGAACTCAAAATACTGACATGAAAAACTTGAATAAATGGTTTATAAGTGTTTTCATTTTTTGAATTTTTAAGTATTTGAAACTCAATTATAAATCAATAAACTGGAGAAATAAAAATGTGTTTATATAAAAATTTAAAAATTTCAATCAATGCATAAATAAAATAATAAATGATATCATATCACAGAATGAAAGACGATTTTTAGAGATTTGCGTAATTAGGATGAGGATAATTAAAATAATTAAGAAGACAATTAAGTATTAAATTGAAAATAAATTATTCAGTTGGTCTTTGTACACTTTTTTGACTAGCATTGGGAATTCAGCTATACGGATTTCAGCACCAACTACACGGTGTCTAGGAGGACTCTTCTAGAAAAAGAAAGTCAAAGAATATTGAGCATTTTGGAATGAGTTAGGGGGATGGAGAGGTAAAAACTAATTAAAGGAACACACTCTCAAAAAAGGAATTACTTAAAAATTCGTCCTTGTCTGGAAAGAGCGTCCGGGCGGTTTGGTTGACTGTAAGTGGGGACGTTGTAGTTGACTGGTTCGACGTCTGGACGATAGGCTGATGGAGAACCCTGGAAATTACGAATTCAGTATTTTTTTTTGAATTATTGAAAATTTCAAAAGTATCAAATGGATCTGTGAAAGTTTCTAAACTTCAGAAAAATTCCGAAGTTTGGAAATAATGGGACTATCAGCATAAAGTTAATGTATCTGAGTTACTGTAAGAGATACCAAAAAGGTGTCAATTGACAAAATGGTTATCATAATATTACCAACATTTTACCAGTTGACACATTTTTGATATCTCTCAAATGCACCGAGATAAGTTGACTCAAAGTTAGGTGTACCGTATTTCCTCCTACCATAGGAATTGAGATAATTAAGGTCAAATTTGACAGTGTGGGCACATTTCTATTGAAGTTTTATATCTTCTCTTGTCTCTGTCTTTTATGTCGTCTTTTCGTCTTTAGTGG</canonical>
            <polymorphic>GTGTTTAAAATTGAGAGAACTCAAAATACTGACATGAAAAACTTGAATAAATGGTTTATAAGTGTTTTCATTTTTTGAATTTTTAAGTATTTGAAACTCAATTATAAATCAATAAACTGGAGAAATAAAAATGTGTTTATATAAAAATTTAAAAATTTCAATCAATGCATAAATAAAATAATAAATGATATCATATCACAGAATGAAAGACGATTTTTAGAGATTTGCGTAATTAGGATGAGGATAATTAAAATAATTAAGAAGACAATTAAGTATTAAATTGAAAATAAATTATTCAGTTGGTCTTTGTACACTTTTTTGACTAGCATTGGGAATTCAGCTATACGGATTTCAGCACCAACTACACGGTGTCTAGGAGGACTCTTCTAGAAAAAGAAAGTCAAAGAATATTGAGCATTTTGGAATGAGTTAGGGGGATGGAGAGGTAAAAACTAATTAAAGGAACACACTCTCAAAAAAGGAATTACTTAAAAATTCGYCCTTGTCTGGAAAGAGCGTCCGGGCGGTTTGGTTGACTGTAAGTGGGGACGTTGTAGTTGACTGGTTCGACGTCTGGACGATAGGCTGATGGAGAACCCTGGAAATTACGAATTCAGTATTTTTTTTTGAATTATTGAAAATTTCAAAAGTATCAAATGGATCTGTGAAAGTTTCTAAACTTCAGAAAAATTCCGAAGTTTGGAAATAATGGGACTATCAGCATAAAGTTAATGTATCTGAGTTACTGTAAGAGATACCAAAAAGGTGTCAATTGACAAAATGGTTATCATAATATTACCAACATTTTACCAGTTGACACATTTTTGATATCTCTCAAATGCACCGAGATAAGTTGACTCAAAGTTAGGTGTACCGTATTTCCTCCTACCATAGGAATTGAGATAATTAAGGTCAAATTTGACAGTGTGGGCACATTTCTATTGAAGTTTTATATCTTCTCTTGTCTCTGTCTTTTATGTCGTCTTTTCGTCTTTAGTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGATGGAGAGGTAAAAACTA</pcr_primer_p1>
		<pcr_primer_p2>TAGAAACTTTCACAGATCCATTT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GGGATGGAGAGGTAAAAACTAATTAAAGGAACACACTCTCAAAAAAGGAATTACTTAAAAATTCGTCCTTGTCTGGAAAGAGCGTCCGGGCGGTTTGGTTGACTGTAAGTGGGGACGTTGTAGTTGACTGGTTCGACGTCTGGACGATAGGCTGATGGAGAACCCTGGAAATTACGAATTCAGTATTTTTTTTTGAATTATTGAAAATTTCAAAAGTATCAAATGGATCTGTGAAAGTTTCTA</canonical_amplicon>
		<polymorphic_amplicon>GGGATGGAGAGGTAAAAACTAATTAAAGGAACACACTCTCAAAAAAGGAATTACTTAAAAATTCGYCCTTGTCTGGAAAGAGCGTCCGGGCGGTTTGGTTGACTGTAAGTGGGGACGTTGTAGTTGACTGGTTCGACGTCTGGACGATAGGCTGATGGAGAACCCTGGAAATTACGAATTCAGTATTTTTTTTTGAATTATTGAAAATTTCAAAAGTATCAAATGGATCTGTGAAAGTTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6522</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>285821</contig_pos>
        <strand>+</strand>
        <context>GATAACCCRA[A/T]GGACAGTGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGTGAAATACACCAAAAAATTGTATGTTTGCCACTTATTGATAACCCGA</left_flank>
        <right_flank>GGACAGTGAGAAAAAGCTTTTGAAAGTGGCATCCTTTAAAGGCGAATAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATTTTGAGGACCCTGGCCCGTCACAATTCCATACATATTTGATCCTAAACTTCCAATAGCGTTCCCAACTTGTCCTACAAACGCCCCAGTCGCATTCATCATCTGCCGTGGCACTCCGCTCAGTGGAATCCATCTACTATCATTTGGCCCGTTACTTCCATATGAGACCTGCATGTGTTGTCGGTTACGGTAGTAGTTTTCGAAATCTTGCTGATTCTGTTCGATGGTATTCGCTTGGGCGTAGGTTCTCCATTCGGGGACGAATAGATAGAAGCAGTCTTGTTGCTTGATGTTCAGGTACTCGTCGTTGTTGTCGGAGGCGTTTCGCATGATTCCGTATTGTGGCAGACAGAAGTCGTAGCAGTCCGTGCAGCGGCGGTCTGGAATTTGTTTTTTCGTGAACACTAGAAATTCAGGACTGATAAGTGGTATCAAAAGTCGGTCAATTAGTGAAATACACCAAAAAATTGTATGTTTGCCACTTATTGATAACCCGAAGGACAGTGAGAAAAAGCTTTTGAAAGTGGCATCCTTTAAAGGCGAATAACTATTTTCTTGCTACAGTTCTATGAATGTTGCAAGCTAAAAAAAAATGAGTAAAACTGTAGTTCATTCATTTTTCTCAAAAAAAGTTTTTTGGTATCTCTAACGATACTCGAGATATGCGCCTTTGAAATTTGGAATAGACGCAGACAACGAGAGGTTCTCGTTTCTCTGCGTCTCCATCCAACTTTAGAGGCGCATATCTCATTAACCGTCAGAGCTATCGAAATGCTTTGAACTAAGAGAATGTGTAAATTCTAATTTTACACAATTCATAGTTGTGAAAATTGTTGGGTTGCAAGAATGAAACCGTCTAGCTTCTCTCCACTTTCTAAATCCTTTTCAACTCACTTCTCTGATCTGAAGTCTGTTGTAGCTGCACAATTCGAGATCCATTGCACTCTGGGATCGGTGGGTTAAACATGTTTTGAGCCTGTAACTAGGAAAACTACAAG</canonical>
            <polymorphic>GGATTTTGAGGACCCTGGCCCGTCACAATTCCATACATATTTGATCCTAAACTTCCAATAGCGTTCCCAACTTGTCCTACAAACGCCCCAGTCGCATTCATCATCTGCCGTGGCACTCCGCTCAGTGGAATCCATCTACTATCATTTGGCCCGTTACTTCCATATGAGACCTGCATGTGTTGTCGGTTACGGTAGTAGTTTTCGAAATCTTGCTGATTCTGTTCGATGGTATTCGCTTGGGCGTAGGTTCTCCATTCGGGGACGAATAGATAGAAGCAGTCTTGTTGCTTGATGTTCAGGTACTCGTCGTTGTTGTCGGAGGCGTTTCGCATGATTCCGTATTGTGGCAGACAGAAGTCGTAGCAGTCCGTGCAGCGGCGGTCTGGAATTTGTTTTTTCGTGAACACTAGAAATTCAGGACTGATAAGTGGTATCAAAAGTCGGTCAATTAGTGAAATACACCAAAAAATTGTATGTTTGCCACTTATTGATAACCCGAWGGACAGTGAGAAAAAGCTTTTGAAAGTGGCATCCTTTAAAGGCGAATAACTATTTTCTTGCTACAGTTCTATGAATGTTGCAAGCTAAAAAAAAATGAGTAAAACTGTAGTTCATTCATTTTTCTCAAAAAAAGTTTTTTGGTATCTCTAACGATACTCGAGATATGCGCCTTTGAAATTTGGAATAGACGCAGACAACGAGAGGTTCTCGTTTCTCTGCGTCTCCATCCAACTTTAGAGGCGCATATCTCATTAACCGTCAGAGCTATCGAAATGCTTTGAACTAAGAGAATGTGTAAATTCTAATTTTACACAATTCATAGTTGTGAAAATTGTTGGGTTGCAAGAATGAAACCGTCTAGCTTCTCTCCACTTTCTAAATCCTTTTCAACTCACTTCTCTGATCTGAAGTCTGTTGTAGCTGCACAATTCGAGATCCATTGCACTCTGGGATCGGTGGGTTAAACATGTTTTGAGCCTGTAACTAGGAAAACTACAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATTGTGGCAGACAGAAGTC</pcr_primer_p1>
		<pcr_primer_p2>TTCATAGAACTGTAGCAAGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GTATTGTGGCAGACAGAAGTCGTAGCAGTCCGTGCAGCGGCGGTCTGGAATTTGTTTTTTCGTGAACACTAGAAATTCAGGACTGATAAGTGGTATCAAAAGTCGGTCAATTAGTGAAATACACCAAAAAATTGTATGTTTGCCACTTATTGATAACCCGAAGGACAGTGAGAAAAAGCTTTTGAAAGTGGCATCCTTTAAAGGCGAATAACTATTTTCTTGCTACAGTTCTATGAA</canonical_amplicon>
		<polymorphic_amplicon>GTATTGTGGCAGACAGAAGTCGTAGCAGTCCGTGCAGCGGCGGTCTGGAATTTGTTTTTTCGTGAACACTAGAAATTCAGGACTGATAAGTGGTATCAAAAGTCGGTCAATTAGTGAAATACACCAAAAAATTGTATGTTTGCCACTTATTGATAACCCGAWGGACAGTGAGAAAAAGCTTTTGAAAGTGGCATCCTTTAAAGGCGAATAACTATTTTCTTGCTACAGTTCTATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6523</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>285819</contig_pos>
        <strand>+</strand>
        <context>TTGATAACCC[A/G]AWGGACAGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTAGTGAAATACACCAAAAAATTGTATGTTTGCCACTTATTGATAACCC</left_flank>
        <right_flank>AAGGACAGTGAGAAAAAGCTTTTGAAAGTGGCATCCTTTAAAGGCGAATA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGATTTTGAGGACCCTGGCCCGTCACAATTCCATACATATTTGATCCTAAACTTCCAATAGCGTTCCCAACTTGTCCTACAAACGCCCCAGTCGCATTCATCATCTGCCGTGGCACTCCGCTCAGTGGAATCCATCTACTATCATTTGGCCCGTTACTTCCATATGAGACCTGCATGTGTTGTCGGTTACGGTAGTAGTTTTCGAAATCTTGCTGATTCTGTTCGATGGTATTCGCTTGGGCGTAGGTTCTCCATTCGGGGACGAATAGATAGAAGCAGTCTTGTTGCTTGATGTTCAGGTACTCGTCGTTGTTGTCGGAGGCGTTTCGCATGATTCCGTATTGTGGCAGACAGAAGTCGTAGCAGTCCGTGCAGCGGCGGTCTGGAATTTGTTTTTTCGTGAACACTAGAAATTCAGGACTGATAAGTGGTATCAAAAGTCGGTCAATTAGTGAAATACACCAAAAAATTGTATGTTTGCCACTTATTGATAACCCGAAGGACAGTGAGAAAAAGCTTTTGAAAGTGGCATCCTTTAAAGGCGAATAACTATTTTCTTGCTACAGTTCTATGAATGTTGCAAGCTAAAAAAAAATGAGTAAAACTGTAGTTCATTCATTTTTCTCAAAAAAAGTTTTTTGGTATCTCTAACGATACTCGAGATATGCGCCTTTGAAATTTGGAATAGACGCAGACAACGAGAGGTTCTCGTTTCTCTGCGTCTCCATCCAACTTTAGAGGCGCATATCTCATTAACCGTCAGAGCTATCGAAATGCTTTGAACTAAGAGAATGTGTAAATTCTAATTTTACACAATTCATAGTTGTGAAAATTGTTGGGTTGCAAGAATGAAACCGTCTAGCTTCTCTCCACTTTCTAAATCCTTTTCAACTCACTTCTCTGATCTGAAGTCTGTTGTAGCTGCACAATTCGAGATCCATTGCACTCTGGGATCGGTGGGTTAAACATGTTTTGAGCCTGTAACTAGGAAAACTACA</canonical>
            <polymorphic>GAGGATTTTGAGGACCCTGGCCCGTCACAATTCCATACATATTTGATCCTAAACTTCCAATAGCGTTCCCAACTTGTCCTACAAACGCCCCAGTCGCATTCATCATCTGCCGTGGCACTCCGCTCAGTGGAATCCATCTACTATCATTTGGCCCGTTACTTCCATATGAGACCTGCATGTGTTGTCGGTTACGGTAGTAGTTTTCGAAATCTTGCTGATTCTGTTCGATGGTATTCGCTTGGGCGTAGGTTCTCCATTCGGGGACGAATAGATAGAAGCAGTCTTGTTGCTTGATGTTCAGGTACTCGTCGTTGTTGTCGGAGGCGTTTCGCATGATTCCGTATTGTGGCAGACAGAAGTCGTAGCAGTCCGTGCAGCGGCGGTCTGGAATTTGTTTTTTCGTGAACACTAGAAATTCAGGACTGATAAGTGGTATCAAAAGTCGGTCAATTAGTGAAATACACCAAAAAATTGTATGTTTGCCACTTATTGATAACCCRAAGGACAGTGAGAAAAAGCTTTTGAAAGTGGCATCCTTTAAAGGCGAATAACTATTTTCTTGCTACAGTTCTATGAATGTTGCAAGCTAAAAAAAAATGAGTAAAACTGTAGTTCATTCATTTTTCTCAAAAAAAGTTTTTTGGTATCTCTAACGATACTCGAGATATGCGCCTTTGAAATTTGGAATAGACGCAGACAACGAGAGGTTCTCGTTTCTCTGCGTCTCCATCCAACTTTAGAGGCGCATATCTCATTAACCGTCAGAGCTATCGAAATGCTTTGAACTAAGAGAATGTGTAAATTCTAATTTTACACAATTCATAGTTGTGAAAATTGTTGGGTTGCAAGAATGAAACCGTCTAGCTTCTCTCCACTTTCTAAATCCTTTTCAACTCACTTCTCTGATCTGAAGTCTGTTGTAGCTGCACAATTCGAGATCCATTGCACTCTGGGATCGGTGGGTTAAACATGTTTTGAGCCTGTAACTAGGAAAACTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATTGTGGCAGACAGAAGTC</pcr_primer_p1>
		<pcr_primer_p2>TTCATAGAACTGTAGCAAGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GTATTGTGGCAGACAGAAGTCGTAGCAGTCCGTGCAGCGGCGGTCTGGAATTTGTTTTTTCGTGAACACTAGAAATTCAGGACTGATAAGTGGTATCAAAAGTCGGTCAATTAGTGAAATACACCAAAAAATTGTATGTTTGCCACTTATTGATAACCCGAAGGACAGTGAGAAAAAGCTTTTGAAAGTGGCATCCTTTAAAGGCGAATAACTATTTTCTTGCTACAGTTCTATGAA</canonical_amplicon>
		<polymorphic_amplicon>GTATTGTGGCAGACAGAAGTCGTAGCAGTCCGTGCAGCGGCGGTCTGGAATTTGTTTTTTCGTGAACACTAGAAATTCAGGACTGATAAGTGGTATCAAAAGTCGGTCAATTAGTGAAATACACCAAAAAATTGTATGTTTGCCACTTATTGATAACCCRAAGGACAGTGAGAAAAAGCTTTTGAAAGTGGCATCCTTTAAAGGCGAATAACTATTTTCTTGCTACAGTTCTATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6524</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>285793</contig_pos>
        <strand>+</strand>
        <context>CCAAAAAATT[G/T]TATGTTTGCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGATAAGTGGTATCAAAAGTCGGTCAATTAGTGAAATACACCAAAAAATT</left_flank>
        <right_flank>TATGTTTGCCACTTATTGATAACCCGAAGGACAGTGAGAAAAAGCTTTTG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGCCTTGAGGGTTCTGGGGGTTATGAGGATTTTGAGGACCCTGGCCCGTCACAATTCCATACATATTTGATCCTAAACTTCCAATAGCGTTCCCAACTTGTCCTACAAACGCCCCAGTCGCATTCATCATCTGCCGTGGCACTCCGCTCAGTGGAATCCATCTACTATCATTTGGCCCGTTACTTCCATATGAGACCTGCATGTGTTGTCGGTTACGGTAGTAGTTTTCGAAATCTTGCTGATTCTGTTCGATGGTATTCGCTTGGGCGTAGGTTCTCCATTCGGGGACGAATAGATAGAAGCAGTCTTGTTGCTTGATGTTCAGGTACTCGTCGTTGTTGTCGGAGGCGTTTCGCATGATTCCGTATTGTGGCAGACAGAAGTCGTAGCAGTCCGTGCAGCGGCGGTCTGGAATTTGTTTTTTCGTGAACACTAGAAATTCAGGACTGATAAGTGGTATCAAAAGTCGGTCAATTAGTGAAATACACCAAAAAATTGTATGTTTGCCACTTATTGATAACCCGAAGGACAGTGAGAAAAAGCTTTTGAAAGTGGCATCCTTTAAAGGCGAATAACTATTTTCTTGCTACAGTTCTATGAATGTTGCAAGCTAAAAAAAAATGAGTAAAACTGTAGTTCATTCATTTTTCTCAAAAAAAGTTTTTTGGTATCTCTAACGATACTCGAGATATGCGCCTTTGAAATTTGGAATAGACGCAGACAACGAGAGGTTCTCGTTTCTCTGCGTCTCCATCCAACTTTAGAGGCGCATATCTCATTAACCGTCAGAGCTATCGAAATGCTTTGAACTAAGAGAATGTGTAAATTCTAATTTTACACAATTCATAGTTGTGAAAATTGTTGGGTTGCAAGAATGAAACCGTCTAGCTTCTCTCCACTTTCTAAATCCTTTTCAACTCACTTCTCTGATCTGAAGTCTGTTGTAGCTGCACAATTCGAGATCCATTGCACTCTGGGATCGGTGGGTTAAACATGTT</canonical>
            <polymorphic>AATGCCTTGAGGGTTCTGGGGGTTATGAGGATTTTGAGGACCCTGGCCCGTCACAATTCCATACATATTTGATCCTAAACTTCCAATAGCGTTCCCAACTTGTCCTACAAACGCCCCAGTCGCATTCATCATCTGCCGTGGCACTCCGCTCAGTGGAATCCATCTACTATCATTTGGCCCGTTACTTCCATATGAGACCTGCATGTGTTGTCGGTTACGGTAGTAGTTTTCGAAATCTTGCTGATTCTGTTCGATGGTATTCGCTTGGGCGTAGGTTCTCCATTCGGGGACGAATAGATAGAAGCAGTCTTGTTGCTTGATGTTCAGGTACTCGTCGTTGTTGTCGGAGGCGTTTCGCATGATTCCGTATTGTGGCAGACAGAAGTCGTAGCAGTCCGTGCAGCGGCGGTCTGGAATTTGTTTTTTCGTGAACACTAGAAATTCAGGACTGATAAGTGGTATCAAAAGTCGGTCAATTAGTGAAATACACCAAAAAATTKTATGTTTGCCACTTATTGATAACCCGAAGGACAGTGAGAAAAAGCTTTTGAAAGTGGCATCCTTTAAAGGCGAATAACTATTTTCTTGCTACAGTTCTATGAATGTTGCAAGCTAAAAAAAAATGAGTAAAACTGTAGTTCATTCATTTTTCTCAAAAAAAGTTTTTTGGTATCTCTAACGATACTCGAGATATGCGCCTTTGAAATTTGGAATAGACGCAGACAACGAGAGGTTCTCGTTTCTCTGCGTCTCCATCCAACTTTAGAGGCGCATATCTCATTAACCGTCAGAGCTATCGAAATGCTTTGAACTAAGAGAATGTGTAAATTCTAATTTTACACAATTCATAGTTGTGAAAATTGTTGGGTTGCAAGAATGAAACCGTCTAGCTTCTCTCCACTTTCTAAATCCTTTTCAACTCACTTCTCTGATCTGAAGTCTGTTGTAGCTGCACAATTCGAGATCCATTGCACTCTGGGATCGGTGGGTTAAACATGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGTTCAGGTACTCGTCGT</pcr_primer_p1>
		<pcr_primer_p2>TTTAAAGGATGCCACTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATGTTCAGGTACTCGTCGTTGTTGTCGGAGGCGTTTCGCATGATTCCGTATTGTGGCAGACAGAAGTCGTAGCAGTCCGTGCAGCGGCGGTCTGGAATTTGTTTTTTCGTGAACACTAGAAATTCAGGACTGATAAGTGGTATCAAAAGTCGGTCAATTAGTGAAATACACCAAAAAATTGTATGTTTGCCACTTATTGATAACCCGAAGGACAGTGAGAAAAAGCTTTTGAAAGTGGCATCCTTTAAA</canonical_amplicon>
		<polymorphic_amplicon>GATGTTCAGGTACTCGTCGTTGTTGTCGGAGGCGTTTCGCATGATTCCGTATTGTGGCAGACAGAAGTCGTAGCAGTCCGTGCAGCGGCGGTCTGGAATTTGTTTTTTCGTGAACACTAGAAATTCAGGACTGATAAGTGGTATCAAAAGTCGGTCAATTAGTGAAATACACCAAAAAATTKTATGTTTGCCACTTATTGATAACCCGAAGGACAGTGAGAAAAAGCTTTTGAAAGTGGCATCCTTTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6525</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>285738</contig_pos>
        <strand>+</strand>
        <context>CTAGAAATTC[A/G]GGACTGATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCGTGCAGCGGCGGTCTGGAATTTGTTTTTTCGTGAACACTAGAAATTC</left_flank>
        <right_flank>GGACTGATAAGTGGTATCAAAAGTCGGTCAATTAGTGAAATACACCAAAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTATGGTTGATTAGCCTGTCCATTTACAGGTACTCCATAGTTTTGTTGTTGTTGAATGCCTTGAGGGTTCTGGGGGTTATGAGGATTTTGAGGACCCTGGCCCGTCACAATTCCATACATATTTGATCCTAAACTTCCAATAGCGTTCCCAACTTGTCCTACAAACGCCCCAGTCGCATTCATCATCTGCCGTGGCACTCCGCTCAGTGGAATCCATCTACTATCATTTGGCCCGTTACTTCCATATGAGACCTGCATGTGTTGTCGGTTACGGTAGTAGTTTTCGAAATCTTGCTGATTCTGTTCGATGGTATTCGCTTGGGCGTAGGTTCTCCATTCGGGGACGAATAGATAGAAGCAGTCTTGTTGCTTGATGTTCAGGTACTCGTCGTTGTTGTCGGAGGCGTTTCGCATGATTCCGTATTGTGGCAGACAGAAGTCGTAGCAGTCCGTGCAGCGGCGGTCTGGAATTTGTTTTTTCGTGAACACTAGAAATTCAGGACTGATAAGTGGTATCAAAAGTCGGTCAATTAGTGAAATACACCAAAAAATTGTATGTTTGCCACTTATTGATAACCCGAAGGACAGTGAGAAAAAGCTTTTGAAAGTGGCATCCTTTAAAGGCGAATAACTATTTTCTTGCTACAGTTCTATGAATGTTGCAAGCTAAAAAAAAATGAGTAAAACTGTAGTTCATTCATTTTTCTCAAAAAAAGTTTTTTGGTATCTCTAACGATACTCGAGATATGCGCCTTTGAAATTTGGAATAGACGCAGACAACGAGAGGTTCTCGTTTCTCTGCGTCTCCATCCAACTTTAGAGGCGCATATCTCATTAACCGTCAGAGCTATCGAAATGCTTTGAACTAAGAGAATGTGTAAATTCTAATTTTACACAATTCATAGTTGTGAAAATTGTTGGGTTGCAAGAATGAAACCGTCTAGCTTCTCTCCACTTTCTAAATCCTTTTCAACTCACTTCTCTGATCTGAAGTCTGTT</canonical>
            <polymorphic>TGTATGGTTGATTAGCCTGTCCATTTACAGGTACTCCATAGTTTTGTTGTTGTTGAATGCCTTGAGGGTTCTGGGGGTTATGAGGATTTTGAGGACCCTGGCCCGTCACAATTCCATACATATTTGATCCTAAACTTCCAATAGCGTTCCCAACTTGTCCTACAAACGCCCCAGTCGCATTCATCATCTGCCGTGGCACTCCGCTCAGTGGAATCCATCTACTATCATTTGGCCCGTTACTTCCATATGAGACCTGCATGTGTTGTCGGTTACGGTAGTAGTTTTCGAAATCTTGCTGATTCTGTTCGATGGTATTCGCTTGGGCGTAGGTTCTCCATTCGGGGACGAATAGATAGAAGCAGTCTTGTTGCTTGATGTTCAGGTACTCGTCGTTGTTGTCGGAGGCGTTTCGCATGATTCCGTATTGTGGCAGACAGAAGTCGTAGCAGTCCGTGCAGCGGCGGTCTGGAATTTGTTTTTTCGTGAACACTAGAAATTCRGGACTGATAAGTGGTATCAAAAGTCGGTCAATTAGTGAAATACACCAAAAAATTGTATGTTTGCCACTTATTGATAACCCGAAGGACAGTGAGAAAAAGCTTTTGAAAGTGGCATCCTTTAAAGGCGAATAACTATTTTCTTGCTACAGTTCTATGAATGTTGCAAGCTAAAAAAAAATGAGTAAAACTGTAGTTCATTCATTTTTCTCAAAAAAAGTTTTTTGGTATCTCTAACGATACTCGAGATATGCGCCTTTGAAATTTGGAATAGACGCAGACAACGAGAGGTTCTCGTTTCTCTGCGTCTCCATCCAACTTTAGAGGCGCATATCTCATTAACCGTCAGAGCTATCGAAATGCTTTGAACTAAGAGAATGTGTAAATTCTAATTTTACACAATTCATAGTTGTGAAAATTGTTGGGTTGCAAGAATGAAACCGTCTAGCTTCTCTCCACTTTCTAAATCCTTTTCAACTCACTTCTCTGATCTGAAGTCTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGTTCAGGTACTCGTCGT</pcr_primer_p1>
		<pcr_primer_p2>TTTAAAGGATGCCACTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATGTTCAGGTACTCGTCGTTGTTGTCGGAGGCGTTTCGCATGATTCCGTATTGTGGCAGACAGAAGTCGTAGCAGTCCGTGCAGCGGCGGTCTGGAATTTGTTTTTTCGTGAACACTAGAAATTCAGGACTGATAAGTGGTATCAAAAGTCGGTCAATTAGTGAAATACACCAAAAAATTGTATGTTTGCCACTTATTGATAACCCGAAGGACAGTGAGAAAAAGCTTTTGAAAGTGGCATCCTTTAAA</canonical_amplicon>
		<polymorphic_amplicon>GATGTTCAGGTACTCGTCGTTGTTGTCGGAGGCGTTTCGCATGATTCCGTATTGTGGCAGACAGAAGTCGTAGCAGTCCGTGCAGCGGCGGTCTGGAATTTGTTTTTTCGTGAACACTAGAAATTCRGGACTGATAAGTGGTATCAAAAGTCGGTCAATTAGTGAAATACACCAAAAAATTGTATGTTTGCCACTTATTGATAACCCGAAGGACAGTGAGAAAAAGCTTTTGAAAGTGGCATCCTTTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6526</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>285437</contig_pos>
        <strand></strand>
        <context>TGCCGTGGCA[C/T]TCCGCTCAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCAACTTGTCCTACAAACGCCCCAGTCGCATTCATCATCTGCCGTGGCA</left_flank>
        <right_flank>TCCGCTCAGTGGAATCCATCTACTATCATTTGGCCCGTTACTTCCATATG</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAAATTCTGAGAAATCAAACGTTTCAACAACCTAAATCTACTCACCGCCTGTCTTCTCATCTCAGGTCCAATATTCTGTCCTGGACTTCCATTCCCTTGATATGGTTGAACGTTATATTCAGTATTTCCATTTTGTCCATTAACTCCATTCAAGTTCACAACTCCATTTACAGCTGGATGGTATCCGGATGGCTGACGGGATTGTTGCATAATCTGTTGTTGATTCTGAATTCTTTGCTGCTGCATGTCTACCACAGATGGATTTGTATTCTGGGTTGGATACTGTGGATTGTTGACACTGTATGGTTGATTAGCCTGTCCATTTACAGGTACTCCATAGTTTTGTTGTTGTTGAATGCCTTGAGGGTTCTGGGGGTTATGAGGATTTTGAGGACCCTGGCCCGTCACAATTCCATACATATTTGATCCTAAACTTCCAATAGCGTTCCCAACTTGTCCTACAAACGCCCCAGTCGCATTCATCATCTGCCGTGGCACTCCGCTCAGTGGAATCCATCTACTATCATTTGGCCCGTTACTTCCATATGAGACCTGCATGTGTTGTCGGTTACGGTAGTAGTTTTCGAAATCTTGCTGATTCTGTTCGATGGTATTCGCTTGGGCGTAGGTTCTCCATTCGGGGACGAATAGATAGAAGCAGTCTTGTTGCTTGATGTTCAGGTACTCGTCGTTGTTGTCGGAGGCGTTTCGCATGATTCCGTATTGTGGCAGACAGAAGTCGTAGCAGTCCGTGCAGCGGCGGTCTGGAATTTGTTTTTTCGTGAACACTAGAAATTCAGGACTGATAAGTGGTATCAAAAGTCGGTCAATTAGTGAAATACACCAAAAAATTGTATGTTTGCCACTTATTGATAACCCGAAGGACAGTGAGAAAAAGCTTTTGAAAGTGGCATCCTTTAAAGGCGAATAACTATTTTCTTGCTACAGTTCTATGAATGTTGCAAGCTAAAAAAAAATGAGTAAAACTGTAGTTCATT</canonical>
            <polymorphic>TGAAAATTCTGAGAAATCAAACGTTTCAACAACCTAAATCTACTCACCGCCTGTCTTCTCATCTCAGGTCCAATATTCTGTCCTGGACTTCCATTCCCTTGATATGGTTGAACGTTATATTCAGTATTTCCATTTTGTCCATTAACTCCATTCAAGTTCACAACTCCATTTACAGCTGGATGGTATCCGGATGGCTGACGGGATTGTTGCATAATCTGTTGTTGATTCTGAATTCTTTGCTGCTGCATGTCTACCACAGATGGATTTGTATTCTGGGTTGGATACTGTGGATTGTTGACACTGTATGGTTGATTAGCCTGTCCATTTACAGGTACTCCATAGTTTTGTTGTTGTTGAATGCCTTGAGGGTTCTGGGGGTTATGAGGATTTTGAGGACCCTGGCCCGTCACAATTCCATACATATTTGATCCTAAACTTCCAATAGCGTTCCCAACTTGTCCTACAAACGCCCCAGTCGCATTCATCATCTGCCGTGGCAYTCCGCTCAGTGGAATCCATCTACTATCATTTGGCCCGTTACTTCCATATGAGACCTGCATGTGTTGTCGGTTACGGTAGTAGTTTTCGAAATCTTGCTGATTCTGTTCGATGGTATTCGCTTGGGCGTAGGTTCTCCATTCGGGGACGAATAGATAGAAGCAGTCTTGTTGCTTGATGTTCAGGTACTCGTCGTTGTTGTCGGAGGCGTTTCGCATGATTCCGTATTGTGGCAGACAGAAGTCGTAGCAGTCCGTGCAGCGGCGGTCTGGAATTTGTTTTTTCGTGAACACTAGAAATTCAGGACTGATAAGTGGTATCAAAAGTCGGTCAATTAGTGAAATACACCAAAAAATTGTATGTTTGCCACTTATTGATAACCCGAAGGACAGTGAGAAAAAGCTTTTGAAAGTGGCATCCTTTAAAGGCGAATAACTATTTTCTTGCTACAGTTCTATGAATGTTGCAAGCTAAAAAAAAATGAGTAAAACTGTAGTTCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>167 114 109 96 88 87 52 46 33 30 26 25 24 24 22 20 12 11 7 4 3</canonical_bands>
                <polymorphic_bands>167 114 109 96 88 87 52 46 33 30 26 25 24 24 22 20 15 11 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATAGTTTTGTTGTTGTTGAATG</pcr_primer_p1>
		<pcr_primer_p2>AAACTACTACCGTAACCGACAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CATAGTTTTGTTGTTGTTGAATGCCTTGAGGGTTCTGGGGGTTATGAGGATTTTGAGGACCCTGGCCCGTCACAATTCCATACATATTTGATCCTAAACTTCCAATAGCGTTCCCAACTTGTCCTACAAACGCCCCAGTCGCATTCATCATCTGCCGTGGCACTCCGCTCAGTGGAATCCATCTACTATCATTTGGCCCGTTACTTCCATATGAGACCTGCATGTGTTGTCGGTTACGGTAGTAGTTT</canonical_amplicon>
		<polymorphic_amplicon>CATAGTTTTGTTGTTGTTGAATGCCTTGAGGGTTCTGGGGGTTATGAGGATTTTGAGGACCCTGGCCCGTCACAATTCCATACATATTTGATCCTAAACTTCCAATAGCGTTCCCAACTTGTCCTACAAACGCCCCAGTCGCATTCATCATCTGCCGTGGCAYTCCGCTCAGTGGAATCCATCTACTATCATTTGGCCCGTTACTTCCATATGAGACCTGCATGTGTTGTCGGTTACGGTAGTAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6527</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>369190</contig_pos>
        <strand></strand>
        <context>GCTAAAAAAA[T/A]TTTTTTTACA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TAAAATTTTCAGCCATTTTCAACCATTTTCTGTCAATTTAGCTAAAAAAA</left_flank>
        <right_flank>TTTTTTTACAAAAATTACCTGAAAAACGTTTTAATTGTGGAACCGTCTCG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCAATATATTCAAAAGTAGATCAGAATTTTGGATAATGATTTTTTTTGGGTTTTGGAAATTCTGAAATAATCTACCTCATTTGCTCCAATGGAAGCCAACTCTATACGCCTACTTTGAGCTCAGTTATCTCGGTTCCTACAAGGTATCAAAATTTTGTCAACAGATAAAATATTGGTGATATTATGATAAACATTTTATGACTTGAAAAGTTTTTGATATCTATTGAAGGAACCGAATTAATTGAACTAAACTTCGAAACCCCGAATTTCATATTCTTTGATAAAAATGTCAGGTTCTCACTTTTAAGTTTTCAAAGCCAACTTTCCAGATTTGCCTGAATTTTAAGCCAAAATTTTCAGACTCTTTTTTTTGCGATTTTAAACAAATTTTCAGGCTCTTTTTAGACGCTCATAGCCCTATTCCATTCAAGTAAGAGCAGGTTTTCGTTAAAATTTTCAGCCATTTTCAACCATTTTCTGTCAATTTAGCTAAAAAAATTTTTTTTACAAAAATTACCTGAAAAACGTTTTAATTGTGGAACCGTCTCGCCATTCTCTTTTTTACACAGCTTACATTCTTTGAGCTCAATTACCTCGGTTCTTCTAGAAGATACCAAAAATGTGTCAACTGATAAAATATAGCTTTTATTAGAGCATTATTATTCAAACGTTTGTAACATAAATCCTAAAAATCTTTTTTTCTTGGTTCATCCATTTCATCCAACAACCAGTCAAAATAATTTTCAGTTCAAAAAAAAGCAAATGACATCATTTTTCATCCGGATATACAGCAAAAAATGATTCATCCATTGTTTCCACAAGTTTTTTCTTCTTTTCCCACCTACCGGTTTCTTTTTCCTCCCTCATTTTGTTTCCAATAACAGTACCACATTATTTTTCTCATTTCTCCTGCCCATCTGTCCAGTGAGTACCATCCGAACAGGTCCTCCATGTATCATTTCTCACGTTGTCGCCTAGACTCTTTTAGCACAGAAATCA</canonical>
            <polymorphic>ACCAATATATTCAAAAGTAGATCAGAATTTTGGATAATGATTTTTTTTGGGTTTTGGAAATTCTGAAATAATCTACCTCATTTGCTCCAATGGAAGCCAACTCTATACGCCTACTTTGAGCTCAGTTATCTCGGTTCCTACAAGGTATCAAAATTTTGTCAACAGATAAAATATTGGTGATATTATGATAAACATTTTATGACTTGAAAAGTTTTTGATATCTATTGAAGGAACCGAATTAATTGAACTAAACTTCGAAACCCCGAATTTCATATTCTTTGATAAAAATGTCAGGTTCTCACTTTTAAGTTTTCAAAGCCAACTTTCCAGATTTGCCTGAATTTTAAGCCAAAATTTTCAGACTCTTTTTTTTGCGATTTTAAACAAATTTTCAGGCTCTTTTTAGACGCTCATAGCCCTATTCCATTCAAGTAAGAGCAGGTTTTCGTTAAAATTTTCAGCCATTTTCAACCATTTTCTGTCAATTTAGCTAAAAAAAWTTTTTTTACAAAAATTACCTGAAAAACGTTTTAATTGTGGAACCGTCTCGCCATTCTCTTTTTTACACAGCTTACATTCTTTGAGCTCAATTACCTCGGTTCTTCTAGAAGATACCAAAAATGTGTCAACTGATAAAATATAGCTTTTATTAGAGCATTATTATTCAAACGTTTGTAACATAAATCCTAAAAATCTTTTTTTCTTGGTTCATCCATTTCATCCAACAACCAGTCAAAATAATTTTCAGTTCAAAAAAAAGCAAATGACATCATTTTTCATCCGGATATACAGCAAAAAATGATTCATCCATTGTTTCCACAAGTTTTTTCTTCTTTTCCCACCTACCGGTTTCTTTTTCCTCCCTCATTTTGTTTCCAATAACAGTACCACATTATTTTTCTCATTTCTCCTGCCCATCTGTCCAGTGAGTACCATCCGAACAGGTCCTCCATGTATCATTTCTCACGTTGTCGCCTAGACTCTTTTAGCACAGAAATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>503 114 93 74 66 45 34 33 25 13</canonical_bands>
                <polymorphic_bands>548 114 93 74 66 34 33 25 13</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>261 151 93 85 74 66 56 34 33 31 25 25 20 15 14 13 4</canonical_bands>
                <polymorphic_bands>261 151 93 85 74 66 56 34 33 31 29 25 25 20 13 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTGATAAAAATGTCAGGTTC</pcr_primer_p1>
		<pcr_primer_p2>CGTTTGAATAATAATGCTCTAATAA</pcr_primer_p2>
		<pcr_amplicon_size>396</pcr_amplicon_size>
		<canonical_amplicon>TCTTTGATAAAAATGTCAGGTTCTCACTTTTAAGTTTTCAAAGCCAACTTTCCAGATTTGCCTGAATTTTAAGCCAAAATTTTCAGACTCTTTTTTTTGCGATTTTAAACAAATTTTCAGGCTCTTTTTAGACGCTCATAGCCCTATTCCATTCAAGTAAGAGCAGGTTTTCGTTAAAATTTTCAGCCATTTTCAACCATTTTCTGTCAATTTAGCTAAAAAAATTTTTTTTACAAAAATTACCTGAAAAACGTTTTAATTGTGGAACCGTCTCGCCATTCTCTTTTTTACACAGCTTACATTCTTTGAGCTCAATTACCTCGGTTCTTCTAGAAGATACCAAAAATGTGTCAACTGATAAAATATAGCTTTTATTAGAGCATTATTATTCAAACG</canonical_amplicon>
		<polymorphic_amplicon>TCTTTGATAAAAATGTCAGGTTCTCACTTTTAAGTTTTCAAAGCCAACTTTCCAGATTTGCCTGAATTTTAAGCCAAAATTTTCAGACTCTTTTTTTTGCGATTTTAAACAAATTTTCAGGCTCTTTTTAGACGCTCATAGCCCTATTCCATTCAAGTAAGAGCAGGTTTTCGTTAAAATTTTCAGCCATTTTCAACCATTTTCTGTCAATTTAGCTAAAAAAAWTTTTTTTACAAAAATTACCTGAAAAACGTTTTAATTGTGGAACCGTCTCGCCATTCTCTTTTTTACACAGCTTACATTCTTTGAGCTCAATTACCTCGGTTCTTCTAGAAGATACCAAAAATGTGTCAACTGATAAAATATAGCTTTTATTAGAGCATTATTATTCAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6528</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>373895</contig_pos>
        <strand>+</strand>
        <context>AAAATAAATK[A/G]ACAAATTCGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATT</left_flank>
        <right_flank>ACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGTCCGATTTTTGGTGGCCTAGGATGATTTTCTAGGCCATTGTTTATGACTTTTGAAAATACCTCAATTCAGAGTTATCGTTCTTGAAATGGAGAAGCTCTGAACATACAGAAAAAGTATTTTTCAGTGTCATTTTAATTGTTTTCAGGAGTTTGAAACTCGGCTGTCAAGTCTCCGAACACTTTGAAAATTTTGTGGGGGTGTAAAACAGACCTAGATTCAAAACTGCATTCACAAAGTTTTTGAAAACCCCTAGTTTTCAGGTATTTTCCAATTTTTGAAAGGCACATGTTCGTTCACGTCTTCAGTACAAAAAACCGGTCAAAAATGGGTGTCCTTCAGAAATCTGAAAAACTAGGAATTTTCAAAAAAAAAATCTGTAAATGCAAAGCTTTCAATCTAGGTCTGTTTTACATTCTCCAA</canonical>
            <polymorphic>TTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTRACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGTCCGATTTTTGGTGGCCTAGGATGATTTTCTAGGCCATTGTTTATGACTTTTGAAAATACCTCAATTCAGAGTTATCGTTCTTGAAATGGAGAAGCTCTGAACATACAGAAAAAGTATTTTTCAGTGTCATTTTAATTGTTTTCAGGAGTTTGAAACTCGGCTGTCAAGTCTCCGAACACTTTGAAAATTTTGTGGGGGTGTAAAACAGACCTAGATTCAAAACTGCATTCACAAAGTTTTTGAAAACCCCTAGTTTTCAGGTATTTTCCAATTTTTGAAAGGCACATGTTCGTTCACGTCTTCAGTACAAAAAACCGGTCAAAAATGGGTGTCCTTCAGAAATCTGAAAAACTAGGAATTTTCAAAAAAAAAATCTGTAAATGCAAAGCTTTCAATCTAGGTCTGTTTTACATTCTCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>498 288 187 27</canonical_bands>
                <polymorphic_bands>525 288 187</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGAAGTAGACTAGTGACACAGG</pcr_primer_p1>
		<pcr_primer_p2>AACTCTGAATTGAGGTATTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGTCCGATTTTTGGTGGCCTAGGATGATTTTCTAGGCCATTGTTTATGACTTTTGAAAATACCTCAATTCAGAGTT</canonical_amplicon>
		<polymorphic_amplicon>AGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTRACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGTCCGATTTTTGGTGGCCTAGGATGATTTTCTAGGCCATTGTTTATGACTTTTGAAAATACCTCAATTCAGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6529</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>373894</contig_pos>
        <strand>+</strand>
        <context>AAAAATAAAT[G/T]RACAAATTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAAT</left_flank>
        <right_flank>AACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACC</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGTCCGATTTTTGGTGGCCTAGGATGATTTTCTAGGCCATTGTTTATGACTTTTGAAAATACCTCAATTCAGAGTTATCGTTCTTGAAATGGAGAAGCTCTGAACATACAGAAAAAGTATTTTTCAGTGTCATTTTAATTGTTTTCAGGAGTTTGAAACTCGGCTGTCAAGTCTCCGAACACTTTGAAAATTTTGTGGGGGTGTAAAACAGACCTAGATTCAAAACTGCATTCACAAAGTTTTTGAAAACCCCTAGTTTTCAGGTATTTTCCAATTTTTGAAAGGCACATGTTCGTTCACGTCTTCAGTACAAAAAACCGGTCAAAAATGGGTGTCCTTCAGAAATCTGAAAAACTAGGAATTTTCAAAAAAAAAATCTGTAAATGCAAAGCTTTCAATCTAGGTCTGTTTTACATTCTCCA</canonical>
            <polymorphic>TTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATKAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGTCCGATTTTTGGTGGCCTAGGATGATTTTCTAGGCCATTGTTTATGACTTTTGAAAATACCTCAATTCAGAGTTATCGTTCTTGAAATGGAGAAGCTCTGAACATACAGAAAAAGTATTTTTCAGTGTCATTTTAATTGTTTTCAGGAGTTTGAAACTCGGCTGTCAAGTCTCCGAACACTTTGAAAATTTTGTGGGGGTGTAAAACAGACCTAGATTCAAAACTGCATTCACAAAGTTTTTGAAAACCCCTAGTTTTCAGGTATTTTCCAATTTTTGAAAGGCACATGTTCGTTCACGTCTTCAGTACAAAAAACCGGTCAAAAATGGGTGTCCTTCAGAAATCTGAAAAACTAGGAATTTTCAAAAAAAAAATCTGTAAATGCAAAGCTTTCAATCTAGGTCTGTTTTACATTCTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>499 287 187 27</canonical_bands>
                <polymorphic_bands>526 287 187</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>162 127 115 87 84 71 66 63 59 52 39 24 22 11 10 8</canonical_bands>
                <polymorphic_bands>170 127 115 87 84 71 66 63 59 52 39 24 22 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGAAGTAGACTAGTGACACAGG</pcr_primer_p1>
		<pcr_primer_p2>AACTCTGAATTGAGGTATTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGTCCGATTTTTGGTGGCCTAGGATGATTTTCTAGGCCATTGTTTATGACTTTTGAAAATACCTCAATTCAGAGTT</canonical_amplicon>
		<polymorphic_amplicon>AGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATKAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGTCCGATTTTTGGTGGCCTAGGATGATTTTCTAGGCCATTGTTTATGACTTTTGAAAATACCTCAATTCAGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6530</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>373877</contig_pos>
        <strand></strand>
        <context>TAGGGAAATA[T/A]GTATCCAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATA</left_flank>
        <right_flank>GTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGTCCGATTTTTGGTGGCCTAGGATGATTTTCTAGGCCATTGTTTATGACTTTTGAAAATACCTCAATTCAGAGTTATCGTTCTTGAAATGGAGAAGCTCTGAACATACAGAAAAAGTATTTTTCAGTGTCATTTTAATTGTTTTCAGGAGTTTGAAACTCGGCTGTCAAGTCTCCGAACACTTTGAAAATTTTGTGGGGGTGTAAAACAGACCTAGATTCAAAACTGCATTCACAAAGTTTTTGAAAACCCCTAGTTTTCAGGTATTTTCCAATTTTTGAAAGGCACATGTTCGTTCACGTCTTCAGTACAAAAAACCGGTCAAAAATGGGTGTCCTTCAGAAATCTGAAAAACTAGGAATTTTCAAAAAAAAAATCTGTAAATGCAAAGCTTTCAATCTAGGT</canonical>
            <polymorphic>TTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATAWGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGTCCGATTTTTGGTGGCCTAGGATGATTTTCTAGGCCATTGTTTATGACTTTTGAAAATACCTCAATTCAGAGTTATCGTTCTTGAAATGGAGAAGCTCTGAACATACAGAAAAAGTATTTTTCAGTGTCATTTTAATTGTTTTCAGGAGTTTGAAACTCGGCTGTCAAGTCTCCGAACACTTTGAAAATTTTGTGGGGGTGTAAAACAGACCTAGATTCAAAACTGCATTCACAAAGTTTTTGAAAACCCCTAGTTTTCAGGTATTTTCCAATTTTTGAAAGGCACATGTTCGTTCACGTCTTCAGTACAAAAAACCGGTCAAAAATGGGTGTCCTTCAGAAATCTGAAAAACTAGGAATTTTCAAAAAAAAAATCTGTAAATGCAAAGCTTTCAATCTAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAAGTAGACTAGTGACACAGG</pcr_primer_p1>
		<pcr_primer_p2>AACTCTGAATTGAGGTATTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGTCCGATTTTTGGTGGCCTAGGATGATTTTCTAGGCCATTGTTTATGACTTTTGAAAATACCTCAATTCAGAGTT</canonical_amplicon>
		<polymorphic_amplicon>AGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATAWGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGTCCGATTTTTGGTGGCCTAGGATGATTTTCTAGGCCATTGTTTATGACTTTTGAAAATACCTCAATTCAGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6531</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>373798</contig_pos>
        <strand>+</strand>
        <context>TTCTTTCTCA[G/T]CATAGGAAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCA</left_flank>
        <right_flank>CATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGTCCGATTTTTGGTGGCCTAGGATGATTTTCTAGGCCATTGTTTATGACTTTTGAAAATACCTCAATTCAGAGTTATCGTTCTTGAAATGGAGAAGCTCTGAACATACAGAAAAAGTATTTTTCAGTGTCATTTTAATTGTTTTCAGGAGTTTGAAACTCGGCTGTCAAGTCTCCGAACACTTTGAAAATTTTGTGGGGGTGTAAAACAGACCTAGATTCAAAACTGCATTCACAAAGTTTTTGAAAACCCCTAGTTTTCAGGTATTTTCCAATTTTTGAAAGGCACATGTTCGTTCACGTCTTCAGTACAAAAAACCGGTCAAA</canonical>
            <polymorphic>ATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCAKCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGTCCGATTTTTGGTGGCCTAGGATGATTTTCTAGGCCATTGTTTATGACTTTTGAAAATACCTCAATTCAGAGTTATCGTTCTTGAAATGGAGAAGCTCTGAACATACAGAAAAAGTATTTTTCAGTGTCATTTTAATTGTTTTCAGGAGTTTGAAACTCGGCTGTCAAGTCTCCGAACACTTTGAAAATTTTGTGGGGGTGTAAAACAGACCTAGATTCAAAACTGCATTCACAAAGTTTTTGAAAACCCCTAGTTTTCAGGTATTTTCCAATTTTTGAAAGGCACATGTTCGTTCACGTCTTCAGTACAAAAAACCGGTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCTCTGAGTATTTGCATTTC</pcr_primer_p1>
		<pcr_primer_p2>CAATTTAATCTTTGGGATACACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTG</canonical_amplicon>
		<polymorphic_amplicon>CTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCAKCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6532</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>373744</contig_pos>
        <strand>+</strand>
        <context>CCCCCTCATC[C/T]GACGTTCTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATC</left_flank>
        <right_flank>GACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGTCCGATTTTTGGTGGCCTAGGATGATTTTCTAGGCCATTGTTTATGACTTTTGAAAATACCTCAATTCAGAGTTATCGTTCTTGAAATGGAGAAGCTCTGAACATACAGAAAAAGTATTTTTCAGTGTCATTTTAATTGTTTTCAGGAGTTTGAAACTCGGCTGTCAAGTCTCCGAACACTTTGAAAATTTTGTGGGGGTGTAAAACAGACCTAGATTCAAAACTGCATTCACAAAGTTTTTGAAAACCCCTAGTTTTCAGGTATTTTCC</canonical>
            <polymorphic>TCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCYGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGTCCGATTTTTGGTGGCCTAGGATGATTTTCTAGGCCATTGTTTATGACTTTTGAAAATACCTCAATTCAGAGTTATCGTTCTTGAAATGGAGAAGCTCTGAACATACAGAAAAAGTATTTTTCAGTGTCATTTTAATTGTTTTCAGGAGTTTGAAACTCGGCTGTCAAGTCTCCGAACACTTTGAAAATTTTGTGGGGGTGTAAAACAGACCTAGATTCAAAACTGCATTCACAAAGTTTTTGAAAACCCCTAGTTTTCAGGTATTTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCTCTGAGTATTTGCATTTC</pcr_primer_p1>
		<pcr_primer_p2>CAATTTAATCTTTGGGATACACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTG</canonical_amplicon>
		<polymorphic_amplicon>CTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCYGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6533</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>373723</contig_pos>
        <strand>+</strand>
        <context>ATTGGATTTC[A/C]TTCAGAATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTC</left_flank>
        <right_flank>TTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGTCCGATTTTTGGTGGCCTAGGATGATTTTCTAGGCCATTGTTTATGACTTTTGAAAATACCTCAATTCAGAGTTATCGTTCTTGAAATGGAGAAGCTCTGAACATACAGAAAAAGTATTTTTCAGTGTCATTTTAATTGTTTTCAGGAGTTTGAAACTCGGCTGTCAAGTCTCCGAACACTTTGAAAATTTTGTGGGGGTGTAAAACAGACCTAGATTCAAAACTGCATTCACAAAGTTTTTGAAAACC</canonical>
            <polymorphic>CAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCMTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGTCCGATTTTTGGTGGCCTAGGATGATTTTCTAGGCCATTGTTTATGACTTTTGAAAATACCTCAATTCAGAGTTATCGTTCTTGAAATGGAGAAGCTCTGAACATACAGAAAAAGTATTTTTCAGTGTCATTTTAATTGTTTTCAGGAGTTTGAAACTCGGCTGTCAAGTCTCCGAACACTTTGAAAATTTTGTGGGGGTGTAAAACAGACCTAGATTCAAAACTGCATTCACAAAGTTTTTGAAAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCGTTGTCTCCTCTGAGTATT</pcr_primer_p1>
		<pcr_primer_p2>TTTGGGATACACACGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAA</canonical_amplicon>
		<polymorphic_amplicon>ACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCMTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6534</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>373617</contig_pos>
        <strand>+</strand>
        <context>TTCCTTCCCT[A/G]GAATCTCCGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCT</left_flank>
        <right_flank>GAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTAGAGCATTTACGGTAACCAAAAGTAAATCTTCATTTTTCAAAACTTTTGTAACATAAATCCTAGAACTTCCTTTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGTCCGATTTTTGGTGGCCTAGGATGATTTTCTAGGCCATTGTTTATGACTTTTGAAAATACCTCAATTCAGAGTTATCGTTCTTGAAATGGAGAAGCTCTGAACATACAGAAAAAGTATTTTTCAGTGTCATTTTAATTGTTTT</canonical>
            <polymorphic>TGTTAGAGCATTTACGGTAACCAAAAGTAAATCTTCATTTTTCAAAACTTTTGTAACATAAATCCTAGAACTTCCTTTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTRGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGTCCGATTTTTGGTGGCCTAGGATGATTTTCTAGGCCATTGTTTATGACTTTTGAAAATACCTCAATTCAGAGTTATCGTTCTTGAAATGGAGAAGCTCTGAACATACAGAAAAAGTATTTTTCAGTGTCATTTTAATTGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>433 181 179 113 65 16 13</canonical_bands>
                <polymorphic_bands>449 181 179 113 65 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAAAGGCTGTGATAGAAGTGTC</pcr_primer_p1>
		<pcr_primer_p2>AGTTACCCATTTGTCAGGAATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACT</canonical_amplicon>
		<polymorphic_amplicon>GTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTRGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6535</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>373334</contig_pos>
        <strand>+</strand>
        <context>TTCCTACCGG[A/T]TTCTCTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGG</left_flank>
        <right_flank>TTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATGTTGGCGATATAATGATAAACATTTTAGCAGATAGCTATTTTTTAATATCTTTTGAAAGAACCGAGATAATTAAACTTGAAGTAACGGTTTGGGTTTTTCAGCTTTTTAATTTTACCGACCACTGTGTTCCCTTGATTGACCCTAATCATACTTCCGCAGTTTGAGCTCAACTATCTCAATTCTCATGAGAGATACCAAAAATTTGTCAATTATAAAATATGGGTGATATTATGATAAATAATGTATCAGTTAAAAAATTGATTTCTTGGGTGGACATCTGTTAGAGCATTTACGGTAACCAAAAGTAAATCTTCATTTTTCAAAACTTTTGTAACATAAATCCTAGAACTTCCTTTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCA</canonical>
            <polymorphic>AAATGTTGGCGATATAATGATAAACATTTTAGCAGATAGCTATTTTTTAATATCTTTTGAAAGAACCGAGATAATTAAACTTGAAGTAACGGTTTGGGTTTTTCAGCTTTTTAATTTTACCGACCACTGTGTTCCCTTGATTGACCCTAATCATACTTCCGCAGTTTGAGCTCAACTATCTCAATTCTCATGAGAGATACCAAAAATTTGTCAATTATAAAATATGGGTGATATTATGATAAATAATGTATCAGTTAAAAAATTGATTTCTTGGGTGGACATCTGTTAGAGCATTTACGGTAACCAAAAGTAAATCTTCATTTTTCAAAACTTTTGTAACATAAATCCTAGAACTTCCTTTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGWTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACCGGT</site>
                <isoschizomers>
                    <enzyme>AgeI</enzyme>
                    <enzyme>AsiAI</enzyme>
                    <enzyme>BshTI</enzyme>
                    <enzyme>CspAI</enzyme>
                    <enzyme>PinAI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>505 435 60</canonical_bands>
                <polymorphic_bands>565 435</polymorphic_bands>
            </assay>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTTTTGGTCCATCTC</pcr_primer_p1>
		<pcr_primer_p2>CTTCTATCACAGCCTTTACCATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGWTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6536</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>373319</contig_pos>
        <strand></strand>
        <context>CAAGTTTTTY[A/C]CCCTTTCCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTT</left_flank>
        <right_flank>CCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAA</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTGTCAACTGATAAAATGTTGGCGATATAATGATAAACATTTTAGCAGATAGCTATTTTTTAATATCTTTTGAAAGAACCGAGATAATTAAACTTGAAGTAACGGTTTGGGTTTTTCAGCTTTTTAATTTTACCGACCACTGTGTTCCCTTGATTGACCCTAATCATACTTCCGCAGTTTGAGCTCAACTATCTCAATTCTCATGAGAGATACCAAAAATTTGTCAATTATAAAATATGGGTGATATTATGATAAATAATGTATCAGTTAAAAAATTGATTTCTTGGGTGGACATCTGTTAGAGCATTTACGGTAACCAAAAGTAAATCTTCATTTTTCAAAACTTTTGTAACATAAATCCTAGAACTTCCTTTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGAC</canonical>
            <polymorphic>AGTTGTCAACTGATAAAATGTTGGCGATATAATGATAAACATTTTAGCAGATAGCTATTTTTTAATATCTTTTGAAAGAACCGAGATAATTAAACTTGAAGTAACGGTTTGGGTTTTTCAGCTTTTTAATTTTACCGACCACTGTGTTCCCTTGATTGACCCTAATCATACTTCCGCAGTTTGAGCTCAACTATCTCAATTCTCATGAGAGATACCAAAAATTTGTCAATTATAAAATATGGGTGATATTATGATAAATAATGTATCAGTTAAAAAATTGATTTCTTGGGTGGACATCTGTTAGAGCATTTACGGTAACCAAAAGTAAATCTTCATTTTTCAAAACTTTTGTAACATAAATCCTAGAACTTCCTTTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTMCCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTTTTGGTCCATCTC</pcr_primer_p1>
		<pcr_primer_p2>CTTCTATCACAGCCTTTACCATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTMCCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6537</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>373318</contig_pos>
        <strand></strand>
        <context>ACAAGTTTTT[T/C]MCCCTTTCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTT</left_flank>
        <right_flank>ACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAA</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTGTCAACTGATAAAATGTTGGCGATATAATGATAAACATTTTAGCAGATAGCTATTTTTTAATATCTTTTGAAAGAACCGAGATAATTAAACTTGAAGTAACGGTTTGGGTTTTTCAGCTTTTTAATTTTACCGACCACTGTGTTCCCTTGATTGACCCTAATCATACTTCCGCAGTTTGAGCTCAACTATCTCAATTCTCATGAGAGATACCAAAAATTTGTCAATTATAAAATATGGGTGATATTATGATAAATAATGTATCAGTTAAAAAATTGATTTCTTGGGTGGACATCTGTTAGAGCATTTACGGTAACCAAAAGTAAATCTTCATTTTTCAAAACTTTTGTAACATAAATCCTAGAACTTCCTTTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGA</canonical>
            <polymorphic>AAGTTGTCAACTGATAAAATGTTGGCGATATAATGATAAACATTTTAGCAGATAGCTATTTTTTAATATCTTTTGAAAGAACCGAGATAATTAAACTTGAAGTAACGGTTTGGGTTTTTCAGCTTTTTAATTTTACCGACCACTGTGTTCCCTTGATTGACCCTAATCATACTTCCGCAGTTTGAGCTCAACTATCTCAATTCTCATGAGAGATACCAAAAATTTGTCAATTATAAAATATGGGTGATATTATGATAAATAATGTATCAGTTAAAAAATTGATTTCTTGGGTGGACATCTGTTAGAGCATTTACGGTAACCAAAAGTAAATCTTCATTTTTCAAAACTTTTGTAACATAAATCCTAGAACTTCCTTTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTYACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTTTTGGTCCATCTC</pcr_primer_p1>
		<pcr_primer_p2>CTTCTATCACAGCCTTTACCATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTYACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6586</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>467574</contig_pos>
        <strand>+</strand>
        <context>TCAGTTCAAG[A/G]ATTTCGAGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCACTTTTGTACATTTTGAATTGAAACAACTTTTAGAGATCAGTTCAAG</left_flank>
        <right_flank>ATTTCGAGGGGTTTTTTTTCGCTTCAAAATGGCACCATCTATCATTCAAA</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCACATCTCAAGAGCAAGTGTTCCAAACCGCTTTGAAATTTTTTCTGTATATCTACACCAAACATTTTTCATCACAAAGCAAATCTTTAAAAAAAATTCTGACGGAAATTTTTTTTTCATCTGGAGTCATCGCCACGTCTGTGAAGATTCAGAAGACACAAATATTGATTGAGTTCCAAAAAACTTATACAACGTTTTTTTGAAAAACCAGGTACATTTAACAAAAAAGTTTTCAATGATTGGACAAGTTTGAGCAAAGTTATGAACAAAAGTATAGAGGGACACTCACTAACGTTCGCCACTGTAGTTCATCGCTTCGCTCCTCACTCTGTGGAAAAGGAAACATATCAAAAGACTCCGTTTTTTTTATTCACCATTAGTGCGGCAATTTTTCCGTTGAAAATTAAAATGGGCGGGATCTACAAATTGTCGTTTACAACCATTTTTACCCACTTTTGTACATTTTGAATTGAAACAACTTTTAGAGATCAGTTCAAGAATTTCGAGGGGTTTTTTTTCGCTTCAAAATGGCACCATCTATCATTCAAAAAAGCGACACAGGTCTGCGGACTACAATAGCAAAAGTTCTAAATTTTCTATGACGAAAATTTAATAATTTAAATTCAATTTTAAATTTCTTAAGTTCAAAAACTCACCAAAAAAATAACAGACTCTCCATCCGCTGATGCTGTTATCCCACGGATAGCCTGATGATAAGGAAACTCAGCCAACCTGCCAACAAGCTTTCCAACGCCATCAAAAACCGAATATTCGAATCCCAGTCTCCCTCTATAAACCATTTCCTGATCATGAACCCATAGTGCTCCTTTTGTTCCAAAGTTAACTTTGTTTTTCAAATGATCTTTGTTAATGGGAACCCCACAAATGAACCATTCGATGTCTATTCGATTTCCATGAAAATATGCGCACAGCATATCTTCATAGACTTCAATTTGTGAGTAGTGTCCAAAAAGGTCCTTGATAGTTACAGTTATTGAT</canonical>
            <polymorphic>AGCACATCTCAAGAGCAAGTGTTCCAAACCGCTTTGAAATTTTTTCTGTATATCTACACCAAACATTTTTCATCACAAAGCAAATCTTTAAAAAAAATTCTGACGGAAATTTTTTTTTCATCTGGAGTCATCGCCACGTCTGTGAAGATTCAGAAGACACAAATATTGATTGAGTTCCAAAAAACTTATACAACGTTTTTTTGAAAAACCAGGTACATTTAACAAAAAAGTTTTCAATGATTGGACAAGTTTGAGCAAAGTTATGAACAAAAGTATAGAGGGACACTCACTAACGTTCGCCACTGTAGTTCATCGCTTCGCTCCTCACTCTGTGGAAAAGGAAACATATCAAAAGACTCCGTTTTTTTTATTCACCATTAGTGCGGCAATTTTTCCGTTGAAAATTAAAATGGGCGGGATCTACAAATTGTCGTTTACAACCATTTTTACCCACTTTTGTACATTTTGAATTGAAACAACTTTTAGAGATCAGTTCAAGRATTTCGAGGGGTTTTTTTTCGCTTCAAAATGGCACCATCTATCATTCAAAAAAGCGACACAGGTCTGCGGACTACAATAGCAAAAGTTCTAAATTTTCTATGACGAAAATTTAATAATTTAAATTCAATTTTAAATTTCTTAAGTTCAAAAACTCACCAAAAAAATAACAGACTCTCCATCCGCTGATGCTGTTATCCCACGGATAGCCTGATGATAAGGAAACTCAGCCAACCTGCCAACAAGCTTTCCAACGCCATCAAAAACCGAATATTCGAATCCCAGTCTCCCTCTATAAACCATTTCCTGATCATGAACCCATAGTGCTCCTTTTGTTCCAAAGTTAACTTTGTTTTTCAAATGATCTTTGTTAATGGGAACCCCACAAATGAACCATTCGATGTCTATTCGATTTCCATGAAAATATGCGCACAGCATATCTTCATAGACTTCAATTTGTGAGTAGTGTCCAAAAAGGTCCTTGATAGTTACAGTTATTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>392 367 92 58 37 16 14 12 12</canonical_bands>
                <polymorphic_bands>484 367 58 37 16 14 12 12</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>374 308 190 112 10 6</canonical_bands>
                <polymorphic_bands>682 190 112 10 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>318 280 92 58 49 43 37 31 23 16 15 12 8 7 6 5</canonical_bands>
                <polymorphic_bands>318 280 123 58 49 43 37 23 16 15 12 8 7 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATCTACAAATTGTCGTTTACA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGGTGAGTTTTTGAACTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGATCTACAAATTGTCGTTTACAACCATTTTTACCCACTTTTGTACATTTTGAATTGAAACAACTTTTAGAGATCAGTTCAAGAATTTCGAGGGGTTTTTTTTCGCTTCAAAATGGCACCATCTATCATTCAAAAAAGCGACACAGGTCTGCGGACTACAATAGCAAAAGTTCTAAATTTTCTATGACGAAAATTTAATAATTTAAATTCAATTTTAAATTTCTTAAGTTCAAAAACTCACCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGATCTACAAATTGTCGTTTACAACCATTTTTACCCACTTTTGTACATTTTGAATTGAAACAACTTTTAGAGATCAGTTCAAGRATTTCGAGGGGTTTTTTTTCGCTTCAAAATGGCACCATCTATCATTCAAAAAAGCGACACAGGTCTGCGGACTACAATAGCAAAAGTTCTAAATTTTCTATGACGAAAATTTAATAATTTAAATTCAATTTTAAATTTCTTAAGTTCAAAAACTCACCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6587</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>467635</contig_pos>
        <strand>+</strand>
        <context>AAAGCGACAC[A/T]GGTCTSCGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTTTTTTTCGCTTCAAAATGGCACCATCTATCATTCAAAAAAGCGACAC</left_flank>
        <right_flank>GGTCTGCGGACTACAATAGCAAAAGTTCTAAATTTTCTATGACGAAAATT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACATTTTTCATCACAAAGCAAATCTTTAAAAAAAATTCTGACGGAAATTTTTTTTTCATCTGGAGTCATCGCCACGTCTGTGAAGATTCAGAAGACACAAATATTGATTGAGTTCCAAAAAACTTATACAACGTTTTTTTGAAAAACCAGGTACATTTAACAAAAAAGTTTTCAATGATTGGACAAGTTTGAGCAAAGTTATGAACAAAAGTATAGAGGGACACTCACTAACGTTCGCCACTGTAGTTCATCGCTTCGCTCCTCACTCTGTGGAAAAGGAAACATATCAAAAGACTCCGTTTTTTTTATTCACCATTAGTGCGGCAATTTTTCCGTTGAAAATTAAAATGGGCGGGATCTACAAATTGTCGTTTACAACCATTTTTACCCACTTTTGTACATTTTGAATTGAAACAACTTTTAGAGATCAGTTCAAGAATTTCGAGGGGTTTTTTTTCGCTTCAAAATGGCACCATCTATCATTCAAAAAAGCGACACAGGTCTGCGGACTACAATAGCAAAAGTTCTAAATTTTCTATGACGAAAATTTAATAATTTAAATTCAATTTTAAATTTCTTAAGTTCAAAAACTCACCAAAAAAATAACAGACTCTCCATCCGCTGATGCTGTTATCCCACGGATAGCCTGATGATAAGGAAACTCAGCCAACCTGCCAACAAGCTTTCCAACGCCATCAAAAACCGAATATTCGAATCCCAGTCTCCCTCTATAAACCATTTCCTGATCATGAACCCATAGTGCTCCTTTTGTTCCAAAGTTAACTTTGTTTTTCAAATGATCTTTGTTAATGGGAACCCCACAAATGAACCATTCGATGTCTATTCGATTTCCATGAAAATATGCGCACAGCATATCTTCATAGACTTCAATTTGTGAGTAGTGTCCAAAAAGGTCCTTGATAGTTACAGTTATTGATTTGCTTGGGTGCCAAGGGTCCTGAACATAGATGACTTTTAAAAGGCGAGTACAGTATTATA</canonical>
            <polymorphic>AACATTTTTCATCACAAAGCAAATCTTTAAAAAAAATTCTGACGGAAATTTTTTTTTCATCTGGAGTCATCGCCACGTCTGTGAAGATTCAGAAGACACAAATATTGATTGAGTTCCAAAAAACTTATACAACGTTTTTTTGAAAAACCAGGTACATTTAACAAAAAAGTTTTCAATGATTGGACAAGTTTGAGCAAAGTTATGAACAAAAGTATAGAGGGACACTCACTAACGTTCGCCACTGTAGTTCATCGCTTCGCTCCTCACTCTGTGGAAAAGGAAACATATCAAAAGACTCCGTTTTTTTTATTCACCATTAGTGCGGCAATTTTTCCGTTGAAAATTAAAATGGGCGGGATCTACAAATTGTCGTTTACAACCATTTTTACCCACTTTTGTACATTTTGAATTGAAACAACTTTTAGAGATCAGTTCAAGAATTTCGAGGGGTTTTTTTTCGCTTCAAAATGGCACCATCTATCATTCAAAAAAGCGACACWGGTCTGCGGACTACAATAGCAAAAGTTCTAAATTTTCTATGACGAAAATTTAATAATTTAAATTCAATTTTAAATTTCTTAAGTTCAAAAACTCACCAAAAAAATAACAGACTCTCCATCCGCTGATGCTGTTATCCCACGGATAGCCTGATGATAAGGAAACTCAGCCAACCTGCCAACAAGCTTTCCAACGCCATCAAAAACCGAATATTCGAATCCCAGTCTCCCTCTATAAACCATTTCCTGATCATGAACCCATAGTGCTCCTTTTGTTCCAAAGTTAACTTTGTTTTTCAAATGATCTTTGTTAATGGGAACCCCACAAATGAACCATTCGATGTCTATTCGATTTCCATGAAAATATGCGCACAGCATATCTTCATAGACTTCAATTTGTGAGTAGTGTCCAAAAAGGTCCTTGATAGTTACAGTTATTGATTTGCTTGGGTGCCAAGGGTCCTGAACATAGATGACTTTTAAAAGGCGAGTACAGTATTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATCTACAAATTGTCGTTTACA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGGTGAGTTTTTGAACTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGATCTACAAATTGTCGTTTACAACCATTTTTACCCACTTTTGTACATTTTGAATTGAAACAACTTTTAGAGATCAGTTCAAGAATTTCGAGGGGTTTTTTTTCGCTTCAAAATGGCACCATCTATCATTCAAAAAAGCGACACAGGTCTGCGGACTACAATAGCAAAAGTTCTAAATTTTCTATGACGAAAATTTAATAATTTAAATTCAATTTTAAATTTCTTAAGTTCAAAAACTCACCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGATCTACAAATTGTCGTTTACAACCATTTTTACCCACTTTTGTACATTTTGAATTGAAACAACTTTTAGAGATCAGTTCAAGAATTTCGAGGGGTTTTTTTTCGCTTCAAAATGGCACCATCTATCATTCAAAAAAGCGACACWGGTCTGCGGACTACAATAGCAAAAGTTCTAAATTTTCTATGACGAAAATTTAATAATTTAAATTCAATTTTAAATTTCTTAAGTTCAAAAACTCACCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6588</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>467641</contig_pos>
        <strand>+</strand>
        <context>ACACWGGTCT[C/G]CGGACTACAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTCGCTTCAAAATGGCACCATCTATCATTCAAAAAAGCGACACAGGTCT</left_flank>
        <right_flank>CGGACTACAATAGCAAAAGTTCTAAATTTTCTATGACGAAAATTTAATAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCATCACAAAGCAAATCTTTAAAAAAAATTCTGACGGAAATTTTTTTTTCATCTGGAGTCATCGCCACGTCTGTGAAGATTCAGAAGACACAAATATTGATTGAGTTCCAAAAAACTTATACAACGTTTTTTTGAAAAACCAGGTACATTTAACAAAAAAGTTTTCAATGATTGGACAAGTTTGAGCAAAGTTATGAACAAAAGTATAGAGGGACACTCACTAACGTTCGCCACTGTAGTTCATCGCTTCGCTCCTCACTCTGTGGAAAAGGAAACATATCAAAAGACTCCGTTTTTTTTATTCACCATTAGTGCGGCAATTTTTCCGTTGAAAATTAAAATGGGCGGGATCTACAAATTGTCGTTTACAACCATTTTTACCCACTTTTGTACATTTTGAATTGAAACAACTTTTAGAGATCAGTTCAAGAATTTCGAGGGGTTTTTTTTCGCTTCAAAATGGCACCATCTATCATTCAAAAAAGCGACACAGGTCTGCGGACTACAATAGCAAAAGTTCTAAATTTTCTATGACGAAAATTTAATAATTTAAATTCAATTTTAAATTTCTTAAGTTCAAAAACTCACCAAAAAAATAACAGACTCTCCATCCGCTGATGCTGTTATCCCACGGATAGCCTGATGATAAGGAAACTCAGCCAACCTGCCAACAAGCTTTCCAACGCCATCAAAAACCGAATATTCGAATCCCAGTCTCCCTCTATAAACCATTTCCTGATCATGAACCCATAGTGCTCCTTTTGTTCCAAAGTTAACTTTGTTTTTCAAATGATCTTTGTTAATGGGAACCCCACAAATGAACCATTCGATGTCTATTCGATTTCCATGAAAATATGCGCACAGCATATCTTCATAGACTTCAATTTGTGAGTAGTGTCCAAAAAGGTCCTTGATAGTTACAGTTATTGATTTGCTTGGGTGCCAAGGGTCCTGAACATAGATGACTTTTAAAAGGCGAGTACAGTATTATACCCTAA</canonical>
            <polymorphic>TTTCATCACAAAGCAAATCTTTAAAAAAAATTCTGACGGAAATTTTTTTTTCATCTGGAGTCATCGCCACGTCTGTGAAGATTCAGAAGACACAAATATTGATTGAGTTCCAAAAAACTTATACAACGTTTTTTTGAAAAACCAGGTACATTTAACAAAAAAGTTTTCAATGATTGGACAAGTTTGAGCAAAGTTATGAACAAAAGTATAGAGGGACACTCACTAACGTTCGCCACTGTAGTTCATCGCTTCGCTCCTCACTCTGTGGAAAAGGAAACATATCAAAAGACTCCGTTTTTTTTATTCACCATTAGTGCGGCAATTTTTCCGTTGAAAATTAAAATGGGCGGGATCTACAAATTGTCGTTTACAACCATTTTTACCCACTTTTGTACATTTTGAATTGAAACAACTTTTAGAGATCAGTTCAAGAATTTCGAGGGGTTTTTTTTCGCTTCAAAATGGCACCATCTATCATTCAAAAAAGCGACACAGGTCTSCGGACTACAATAGCAAAAGTTCTAAATTTTCTATGACGAAAATTTAATAATTTAAATTCAATTTTAAATTTCTTAAGTTCAAAAACTCACCAAAAAAATAACAGACTCTCCATCCGCTGATGCTGTTATCCCACGGATAGCCTGATGATAAGGAAACTCAGCCAACCTGCCAACAAGCTTTCCAACGCCATCAAAAACCGAATATTCGAATCCCAGTCTCCCTCTATAAACCATTTCCTGATCATGAACCCATAGTGCTCCTTTTGTTCCAAAGTTAACTTTGTTTTTCAAATGATCTTTGTTAATGGGAACCCCACAAATGAACCATTCGATGTCTATTCGATTTCCATGAAAATATGCGCACAGCATATCTTCATAGACTTCAATTTGTGAGTAGTGTCCAAAAAGGTCCTTGATAGTTACAGTTATTGATTTGCTTGGGTGCCAAGGGTCCTGAACATAGATGACTTTTAAAAGGCGAGTACAGTATTATACCCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATCTACAAATTGTCGTTTACA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGGTGAGTTTTTGAACTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGATCTACAAATTGTCGTTTACAACCATTTTTACCCACTTTTGTACATTTTGAATTGAAACAACTTTTAGAGATCAGTTCAAGAATTTCGAGGGGTTTTTTTTCGCTTCAAAATGGCACCATCTATCATTCAAAAAAGCGACACAGGTCTGCGGACTACAATAGCAAAAGTTCTAAATTTTCTATGACGAAAATTTAATAATTTAAATTCAATTTTAAATTTCTTAAGTTCAAAAACTCACCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGATCTACAAATTGTCGTTTACAACCATTTTTACCCACTTTTGTACATTTTGAATTGAAACAACTTTTAGAGATCAGTTCAAGAATTTCGAGGGGTTTTTTTTCGCTTCAAAATGGCACCATCTATCATTCAAAAAAGCGACACAGGTCTSCGGACTACAATAGCAAAAGTTCTAAATTTTCTATGACGAAAATTTAATAATTTAAATTCAATTTTAAATTTCTTAAGTTCAAAAACTCACCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6589</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>469060</contig_pos>
        <strand>+</strand>
        <context>GTCGTTTTTA[A/G]ATGGTTGCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTCGTCAGTGATACTGAAAATTATTTTCTTGATTTTTTCGTCGTTTTTA</left_flank>
        <right_flank>ATGGTTGCTTATTTTCGAAAATATATCGGAAAACCTGTAATAGAAGGGCC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATATTGACCATTTTCTGAGCATATCGTGGACTACCAATTCCTAGTTTTCCATTCGAATTACTTCCGAAGGCCATTGCACTCGGTAAATCTTCCTTTGGGTAGACTTCCATCAATACCGTACCACTTGACAGTTGTCGAGGGGTTGGTAGAAGTGCGTCCATTGAGAAAAATTTGGTGTTCATGTGTCGTAATCTCCTTTGAATCAACACTTTTGCCGTCGGATTTAGAATTTTTGCCATGGCTATGTACAGCTGTTTCCTGCAGTGTGGTCCGATGGATTCTGCGAAGTTTATGAAGAATTCTGCATCTTCTTCTGCTTCATCCGGTTCTACATTCAAATGTGTTGTATATTGAATCATTCCGTTGAACACTTCACAAGCCTCGCCAAACCTTGTAGCCATTAAACATCGTTTAAAGTCTCCGGATATTCGATGAAATTCATCCAGGTGGTCGTCAGTGATACTGAAAATTATTTTCTTGATTTTTTCGTCGTTTTTAGATGGTTGCTTATTTTCGAAAATATATCGGAAAACCTGTAATAGAAGGGCCCCCACATTGTCAAGCAAAGCACATATTATTTGCTCTAATAATAGCCCACCCTATACATGCACTTTGAGCTCAATTATCTCGGTTCCTACGCTAGATATCAAAAATGTGTCAACTGCTAAAATGTTTGTGATATCATGATAAACAATTTACCAGTTAACAACTATTTGGTATCTTTCACAGGTACCGAGATAAATTGGCTCCAAGTTAAGCCTCTCTATTATTCTACAAAAAAAAATGGAAAACAATTCATTTTTGAATTATTTTCAGAAACCGGAAGTCAATTTTGACCTTAATTCTCCCGGTTCCTGTGGGAAATTTCGAAAATGTGTCAACGTGTGATAATATGTTAGTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTCAAACCTTTGACAGGAACCAAGATATATTGGCTCAGTTAGGGAATCCTAATATTCCGGTAT</canonical>
            <polymorphic>GATATTGACCATTTTCTGAGCATATCGTGGACTACCAATTCCTAGTTTTCCATTCGAATTACTTCCGAAGGCCATTGCACTCGGTAAATCTTCCTTTGGGTAGACTTCCATCAATACCGTACCACTTGACAGTTGTCGAGGGGTTGGTAGAAGTGCGTCCATTGAGAAAAATTTGGTGTTCATGTGTCGTAATCTCCTTTGAATCAACACTTTTGCCGTCGGATTTAGAATTTTTGCCATGGCTATGTACAGCTGTTTCCTGCAGTGTGGTCCGATGGATTCTGCGAAGTTTATGAAGAATTCTGCATCTTCTTCTGCTTCATCCGGTTCTACATTCAAATGTGTTGTATATTGAATCATTCCGTTGAACACTTCACAAGCCTCGCCAAACCTTGTAGCCATTAAACATCGTTTAAAGTCTCCGGATATTCGATGAAATTCATCCAGGTGGTCGTCAGTGATACTGAAAATTATTTTCTTGATTTTTTCGTCGTTTTTARATGGTTGCTTATTTTCGAAAATATATCGGAAAACCTGTAATAGAAGGGCCCCCACATTGTCAAGCAAAGCACATATTATTTGCTCTAATAATAGCCCACCCTATACATGCACTTTGAGCTCAATTATCTCGGTTCCTACGCTAGATATCAAAAATGTGTCAACTGCTAAAATGTTTGTGATATCATGATAAACAATTTACCAGTTAACAACTATTTGGTATCTTTCACAGGTACCGAGATAAATTGGCTCCAAGTTAAGCCTCTCTATTATTCTACAAAAAAAAATGGAAAACAATTCATTTTTGAATTATTTTCAGAAACCGGAAGTCAATTTTGACCTTAATTCTCCCGGTTCCTGTGGGAAATTTCGAAAATGTGTCAACGTGTGATAATATGTTAGTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTCAAACCTTTGACAGGAACCAAGATATATTGGCTCAGTTAGGGAATCCTAATATTCCGGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCTTGTAGCCATTAAACATC</pcr_primer_p1>
		<pcr_primer_p2>GTTTCTGAAAATAATTCAAAAATGA</pcr_primer_p2>
		<pcr_amplicon_size>433</pcr_amplicon_size>
		<canonical_amplicon>AACCTTGTAGCCATTAAACATCGTTTAAAGTCTCCGGATATTCGATGAAATTCATCCAGGTGGTCGTCAGTGATACTGAAAATTATTTTCTTGATTTTTTCGTCGTTTTTAGATGGTTGCTTATTTTCGAAAATATATCGGAAAACCTGTAATAGAAGGGCCCCCACATTGTCAAGCAAAGCACATATTATTTGCTCTAATAATAGCCCACCCTATACATGCACTTTGAGCTCAATTATCTCGGTTCCTACGCTAGATATCAAAAATGTGTCAACTGCTAAAATGTTTGTGATATCATGATAAACAATTTACCAGTTAACAACTATTTGGTATCTTTCACAGGTACCGAGATAAATTGGCTCCAAGTTAAGCCTCTCTATTATTCTACAAAAAAAAATGGAAAACAATTCATTTTTGAATTATTTTCAGAAAC</canonical_amplicon>
		<polymorphic_amplicon>AACCTTGTAGCCATTAAACATCGTTTAAAGTCTCCGGATATTCGATGAAATTCATCCAGGTGGTCGTCAGTGATACTGAAAATTATTTTCTTGATTTTTTCGTCGTTTTTARATGGTTGCTTATTTTCGAAAATATATCGGAAAACCTGTAATAGAAGGGCCCCCACATTGTCAAGCAAAGCACATATTATTTGCTCTAATAATAGCCCACCCTATACATGCACTTTGAGCTCAATTATCTCGGTTCCTACGCTAGATATCAAAAATGTGTCAACTGCTAAAATGTTTGTGATATCATGATAAACAATTTACCAGTTAACAACTATTTGGTATCTTTCACAGGTACCGAGATAAATTGGCTCCAAGTTAAGCCTCTCTATTATTCTACAAAAAAAAATGGAAAACAATTCATTTTTGAATTATTTTCAGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6590</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>468636</contig_pos>
        <strand>+</strand>
        <context>CGAAGGCCAT[G/T]GCACTCGGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGTGGACTACCAATTCCTAGTTTTCCATTCGAATTACTTCCGAAGGCCAT</left_flank>
        <right_flank>GCACTCGGTAAATCTTCCTTTGGGTAGACTTCCATCAATACCGTACCACT</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTAACCTCTCTCAAATATTTATGTCCATCCAATGTAAAAATTTCATTTTTCGGAACGTCGATTAGCTTGAACTGAACTGCTCCATCATCACTGCCCTCCATCTCTAAGCATTTCAGGGATCCATAAGAAGTTGAAGGACCACCAACGTTTTGGAATACTGTCTTTCTTCCGGTGATAAAAAATTTTGGAGGGTTCTGAAAGAAATTGAAAATCAAAGAATGCTGAAACTAAGAAACTCGCATTTTGAGCTGTCTCCCAGTCATGCTTTATACAATTCAGTTTTGTAGGCGTCCACTCAAGTTCAGTTCCCGTTTGGTTTTTATAATTCGCTGATTTTCCGGACCCATAGTAATTTCCAGAGTTTGTAAAGAATATCGAGTGCTCTTCTCCAATTTTTGCATCCATAATCTGTTCTGGCAACTTGATATTGACCATTTTCTGAGCATATCGTGGACTACCAATTCCTAGTTTTCCATTCGAATTACTTCCGAAGGCCATTGCACTCGGTAAATCTTCCTTTGGGTAGACTTCCATCAATACCGTACCACTTGACAGTTGTCGAGGGGTTGGTAGAAGTGCGTCCATTGAGAAAAATTTGGTGTTCATGTGTCGTAATCTCCTTTGAATCAACACTTTTGCCGTCGGATTTAGAATTTTTGCCATGGCTATGTACAGCTGTTTCCTGCAGTGTGGTCCGATGGATTCTGCGAAGTTTATGAAGAATTCTGCATCTTCTTCTGCTTCATCCGGTTCTACATTCAAATGTGTTGTATATTGAATCATTCCGTTGAACACTTCACAAGCCTCGCCAAACCTTGTAGCCATTAAACATCGTTTAAAGTCTCCGGATATTCGATGAAATTCATCCAGGTGGTCGTCAGTGATACTGAAAATTATTTTCTTGATTTTTTCGTCGTTTTTAGATGGTTGCTTATTTTCGAAAATATATCGGAAAACCTGTAATAGAAGGGCCCCCACATTGTCAAGCAAAGCACATAT</canonical>
            <polymorphic>CCTAACCTCTCTCAAATATTTATGTCCATCCAATGTAAAAATTTCATTTTTCGGAACGTCGATTAGCTTGAACTGAACTGCTCCATCATCACTGCCCTCCATCTCTAAGCATTTCAGGGATCCATAAGAAGTTGAAGGACCACCAACGTTTTGGAATACTGTCTTTCTTCCGGTGATAAAAAATTTTGGAGGGTTCTGAAAGAAATTGAAAATCAAAGAATGCTGAAACTAAGAAACTCGCATTTTGAGCTGTCTCCCAGTCATGCTTTATACAATTCAGTTTTGTAGGCGTCCACTCAAGTTCAGTTCCCGTTTGGTTTTTATAATTCGCTGATTTTCCGGACCCATAGTAATTTCCAGAGTTTGTAAAGAATATCGAGTGCTCTTCTCCAATTTTTGCATCCATAATCTGTTCTGGCAACTTGATATTGACCATTTTCTGAGCATATCGTGGACTACCAATTCCTAGTTTTCCATTCGAATTACTTCCGAAGGCCATKGCACTCGGTAAATCTTCCTTTGGGTAGACTTCCATCAATACCGTACCACTTGACAGTTGTCGAGGGGTTGGTAGAAGTGCGTCCATTGAGAAAAATTTGGTGTTCATGTGTCGTAATCTCCTTTGAATCAACACTTTTGCCGTCGGATTTAGAATTTTTGCCATGGCTATGTACAGCTGTTTCCTGCAGTGTGGTCCGATGGATTCTGCGAAGTTTATGAAGAATTCTGCATCTTCTTCTGCTTCATCCGGTTCTACATTCAAATGTGTTGTATATTGAATCATTCCGTTGAACACTTCACAAGCCTCGCCAAACCTTGTAGCCATTAAACATCGTTTAAAGTCTCCGGATATTCGATGAAATTCATCCAGGTGGTCGTCAGTGATACTGAAAATTATTTTCTTGATTTTTTCGTCGTTTTTAGATGGTTGCTTATTTTCGAAAATATATCGGAAAACCTGTAATAGAAGGGCCCCCACATTGTCAAGCAAAGCACATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>399 271 185 102 43</canonical_bands>
                <polymorphic_bands>399 287 271 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCAGAGTTTGTAAAGAATATCG</pcr_primer_p1>
		<pcr_primer_p2>GAACACCAAATTTTTCTCAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCAGAGTTTGTAAAGAATATCGAGTGCTCTTCTCCAATTTTTGCATCCATAATCTGTTCTGGCAACTTGATATTGACCATTTTCTGAGCATATCGTGGACTACCAATTCCTAGTTTTCCATTCGAATTACTTCCGAAGGCCATTGCACTCGGTAAATCTTCCTTTGGGTAGACTTCCATCAATACCGTACCACTTGACAGTTGTCGAGGGGTTGGTAGAAGTGCGTCCATTGAGAAAAATTTGGTGTTC</canonical_amplicon>
		<polymorphic_amplicon>TCCAGAGTTTGTAAAGAATATCGAGTGCTCTTCTCCAATTTTTGCATCCATAATCTGTTCTGGCAACTTGATATTGACCATTTTCTGAGCATATCGTGGACTACCAATTCCTAGTTTTCCATTCGAATTACTTCCGAAGGCCATKGCACTCGGTAAATCTTCCTTTGGGTAGACTTCCATCAATACCGTACCACTTGACAGTTGTCGAGGGGTTGGTAGAAGTGCGTCCATTGAGAAAAATTTGGTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6591</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>470349</contig_pos>
        <strand>+</strand>
        <context>ATTCCTTATA[G/T]TTAGTTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCAACTAATGCTGATTAATTCCTTACTGATTAATTGATTAATTCCTTATA</left_flank>
        <right_flank>TTAGTTTTTCTAAATTCTTAAATTTTCAAATTTCCGAGTTCAACGTTCTA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAGGCTAGAAGGGATCCATGTTCCCAGGTAATCTGAAAAAAATTGTTTTGGAAATTTTGAAGACAAAAGCCACGATCTAAAAAATTGGAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAATTGAAATCTAGGCCATGACCTAAAAAATTGAAATCTAGGCCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAATTGAAATCTAGATCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAAATCTAGGTCGTGACCTAAAAAATGGAATCTAGGTCAGATTTCTCATCACGTTTAAAAAACCTTTGATTTTTCAAAAATTTTTAATCCTCCCAACTCCTTAAAAGATCGTCTTTTTGGCCCTCATTTTATTTTTTTTTTGTTTGAGATATCAAAAATCTTTCAACTAATGCTGATTAATTCCTTACTGATTAATTGATTAATTCCTTATATTTAGTTTTTCTAAATTCTTAAATTTTCAAATTTCCGAGTTCAACGTTCTAACATTCCTCATTTTACTGAGTTTCTAGAGTTTTGAATTTTCGAAAATTGTAAAATTTTAAATTCAGAAATTCATAAGTTTGAAACATCAAAAATTCAAAATCACAGAAATTCAAAAATTCAGAAATATAGAAATTCACATTTTCCACAATTCAGAATCCTTGAATTGCAACAACAACGTCTTTCTATTCTTTTTCCGAACTACAGTAACCTTAAATTACTGTAATACATATTTCATCCATTTTTAATAAAAGGCGCATATCGTAACAACAATAGCCGCAACTGATTATGCGCCTTTAAATCAGCTGTTATCTATCAAAATACACAAAGAAACACTTACTGTTCGGTTAGGCCATAATAATCGATACTGTCCATGGCCGCCATTTACCCAAGTCCTGCAAAAAGAAGAAAAGGGGAAAAGATAAGAAAAAGAAAAGGGCCAAAATCGATAA</canonical>
            <polymorphic>GTAGGCTAGAAGGGATCCATGTTCCCAGGTAATCTGAAAAAAATTGTTTTGGAAATTTTGAAGACAAAAGCCACGATCTAAAAAATTGGAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAATTGAAATCTAGGCCATGACCTAAAAAATTGAAATCTAGGCCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAATTGAAATCTAGATCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAAATCTAGGTCGTGACCTAAAAAATGGAATCTAGGTCAGATTTCTCATCACGTTTAAAAAACCTTTGATTTTTCAAAAATTTTTAATCCTCCCAACTCCTTAAAAGATCGTCTTTTTGGCCCTCATTTTATTTTTTTTTTGTTTGAGATATCAAAAATCTTTCAACTAATGCTGATTAATTCCTTACTGATTAATTGATTAATTCCTTATAKTTAGTTTTTCTAAATTCTTAAATTTTCAAATTTCCGAGTTCAACGTTCTAACATTCCTCATTTTACTGAGTTTCTAGAGTTTTGAATTTTCGAAAATTGTAAAATTTTAAATTCAGAAATTCATAAGTTTGAAACATCAAAAATTCAAAATCACAGAAATTCAAAAATTCAGAAATATAGAAATTCACATTTTCCACAATTCAGAATCCTTGAATTGCAACAACAACGTCTTTCTATTCTTTTTCCGAACTACAGTAACCTTAAATTACTGTAATACATATTTCATCCATTTTTAATAAAAGGCGCATATCGTAACAACAATAGCCGCAACTGATTATGCGCCTTTAAATCAGCTGTTATCTATCAAAATACACAAAGAAACACTTACTGTTCGGTTAGGCCATAATAATCGATACTGTCCATGGCCGCCATTTACCCAAGTCCTGCAAAAAGAAGAAAAGGGGAAAAGATAAGAAAAAGAAAAGGGCCAAAATCGATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGGAAATTTTGAAGACAA</pcr_primer_p1>
		<pcr_primer_p2>TCTAGAAACTCAGTAAAATGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>532</pcr_amplicon_size>
		<canonical_amplicon>TTTTGGAAATTTTGAAGACAAAAGCCACGATCTAAAAAATTGGAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAATTGAAATCTAGGCCATGACCTAAAAAATTGAAATCTAGGCCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAATTGAAATCTAGATCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAAATCTAGGTCGTGACCTAAAAAATGGAATCTAGGTCAGATTTCTCATCACGTTTAAAAAACCTTTGATTTTTCAAAAATTTTTAATCCTCCCAACTCCTTAAAAGATCGTCTTTTTGGCCCTCATTTTATTTTTTTTTTGTTTGAGATATCAAAAATCTTTCAACTAATGCTGATTAATTCCTTACTGATTAATTGATTAATTCCTTATATTTAGTTTTTCTAAATTCTTAAATTTTCAAATTTCCGAGTTCAACGTTCTAACATTCCTCATTTTACTGAGTTTCTAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTGGAAATTTTGAAGACAAAAGCCACGATCTAAAAAATTGGAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAATTGAAATCTAGGCCATGACCTAAAAAATTGAAATCTAGGCCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAATTGAAATCTAGATCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAAATCTAGGTCGTGACCTAAAAAATGGAATCTAGGTCAGATTTCTCATCACGTTTAAAAAACCTTTGATTTTTCAAAAATTTTTAATCCTCCCAACTCCTTAAAAGATCGTCTTTTTGGCCCTCATTTTATTTTTTTTTTGTTTGAGATATCAAAAATCTTTCAACTAATGCTGATTAATTCCTTACTGATTAATTGATTAATTCCTTATAKTTAGTTTTTCTAAATTCTTAAATTTTCAAATTTCCGAGTTCAACGTTCTAACATTCCTCATTTTACTGAGTTTCTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6592</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>470682</contig_pos>
        <strand>+</strand>
        <context>AGCCGCAACT[A/G]ATTATGCGCC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATCCATTTTTAATAAAAGGCGCATATCGTAACAACAATAGCCGCAACT</left_flank>
        <right_flank>ATTATGCGCCTTTAAATCAGCTGTTATCTATCAAAATACACAAAGAAACA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCACGTTTAAAAAACCTTTGATTTTTCAAAAATTTTTAATCCTCCCAACTCCTTAAAAGATCGTCTTTTTGGCCCTCATTTTATTTTTTTTTTGTTTGAGATATCAAAAATCTTTCAACTAATGCTGATTAATTCCTTACTGATTAATTGATTAATTCCTTATATTTAGTTTTTCTAAATTCTTAAATTTTCAAATTTCCGAGTTCAACGTTCTAACATTCCTCATTTTACTGAGTTTCTAGAGTTTTGAATTTTCGAAAATTGTAAAATTTTAAATTCAGAAATTCATAAGTTTGAAACATCAAAAATTCAAAATCACAGAAATTCAAAAATTCAGAAATATAGAAATTCACATTTTCCACAATTCAGAATCCTTGAATTGCAACAACAACGTCTTTCTATTCTTTTTCCGAACTACAGTAACCTTAAATTACTGTAATACATATTTCATCCATTTTTAATAAAAGGCGCATATCGTAACAACAATAGCCGCAACTGATTATGCGCCTTTAAATCAGCTGTTATCTATCAAAATACACAAAGAAACACTTACTGTTCGGTTAGGCCATAATAATCGATACTGTCCATGGCCGCCATTTACCCAAGTCCTGCAAAAAGAAGAAAAGGGGAAAAGATAAGAAAAAGAAAAGGGCCAAAATCGATAATTTTTTCCGTCGTTGAAGATGCTCATGTTTTTAATCAAATTCTGACTTTTTTTTGTAATCAAAAAAGGTAATTGGTGAGTGAAAACCATCTGACCGCGGCCGGCCGCATCGATTATGCAGTGTTGGGGTCAGAAAGTGTAAGCGAGCGGCTGCTCGCACTGACTTGCCGAAGGAGACGAGGAGGAAAAATATAACGCTTCTTTCGCTCCCTTTCTCTCTCTCTCCGCATGCCTATGGCGAAATAATAGACGCCAGAGTTTCTCTTCTTTTTTGTCTTTTTGAAAAATTGCGGTTTGATGAGGGGTGTCGGATCCTAGGCCACTCGGCCGTGTA</canonical>
            <polymorphic>CATCACGTTTAAAAAACCTTTGATTTTTCAAAAATTTTTAATCCTCCCAACTCCTTAAAAGATCGTCTTTTTGGCCCTCATTTTATTTTTTTTTTGTTTGAGATATCAAAAATCTTTCAACTAATGCTGATTAATTCCTTACTGATTAATTGATTAATTCCTTATATTTAGTTTTTCTAAATTCTTAAATTTTCAAATTTCCGAGTTCAACGTTCTAACATTCCTCATTTTACTGAGTTTCTAGAGTTTTGAATTTTCGAAAATTGTAAAATTTTAAATTCAGAAATTCATAAGTTTGAAACATCAAAAATTCAAAATCACAGAAATTCAAAAATTCAGAAATATAGAAATTCACATTTTCCACAATTCAGAATCCTTGAATTGCAACAACAACGTCTTTCTATTCTTTTTCCGAACTACAGTAACCTTAAATTACTGTAATACATATTTCATCCATTTTTAATAAAAGGCGCATATCGTAACAACAATAGCCGCAACTRATTATGCGCCTTTAAATCAGCTGTTATCTATCAAAATACACAAAGAAACACTTACTGTTCGGTTAGGCCATAATAATCGATACTGTCCATGGCCGCCATTTACCCAAGTCCTGCAAAAAGAAGAAAAGGGGAAAAGATAAGAAAAAGAAAAGGGCCAAAATCGATAATTTTTTCCGTCGTTGAAGATGCTCATGTTTTTAATCAAATTCTGACTTTTTTTTGTAATCAAAAAAGGTAATTGGTGAGTGAAAACCATCTGACCGCGGCCGGCCGCATCGATTATGCAGTGTTGGGGTCAGAAAGTGTAAGCGAGCGGCTGCTCGCACTGACTTGCCGAAGGAGACGAGGAGGAAAAATATAACGCTTCTTTCGCTCCCTTTCTCTCTCTCTCCGCATGCCTATGGCGAAATAATAGACGCCAGAGTTTCTCTTCTTTTTTGTCTTTTTGAAAAATTGCGGTTTGATGAGGGGTGTCGGATCCTAGGCCACTCGGCCGTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCACAGAAATTCAAAAATTCA</pcr_primer_p1>
		<pcr_primer_p2>TAACCGAACAGTAAGTGTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCACAGAAATTCAAAAATTCAGAAATATAGAAATTCACATTTTCCACAATTCAGAATCCTTGAATTGCAACAACAACGTCTTTCTATTCTTTTTCCGAACTACAGTAACCTTAAATTACTGTAATACATATTTCATCCATTTTTAATAAAAGGCGCATATCGTAACAACAATAGCCGCAACTGATTATGCGCCTTTAAATCAGCTGTTATCTATCAAAATACACAAAGAAACACTTACTGTTCGGTTA</canonical_amplicon>
		<polymorphic_amplicon>AATCACAGAAATTCAAAAATTCAGAAATATAGAAATTCACATTTTCCACAATTCAGAATCCTTGAATTGCAACAACAACGTCTTTCTATTCTTTTTCCGAACTACAGTAACCTTAAATTACTGTAATACATATTTCATCCATTTTTAATAAAAGGCGCATATCGTAACAACAATAGCCGCAACTRATTATGCGCCTTTAAATCAGCTGTTATCTATCAAAATACACAAAGAAACACTTACTGTTCGGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6593</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>470711</contig_pos>
        <strand>+</strand>
        <context>AGCTGTTATC[A/T]WTCAAAATAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTAACAACAATAGCCGCAACTGATTATGCGCCTTTAAATCAGCTGTTATC</left_flank>
        <right_flank>ATCAAAATACACAAAGAAACACTTACTGTTCGGTTAGGCCATAATAATCG</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATTTTTAATCCTCCCAACTCCTTAAAAGATCGTCTTTTTGGCCCTCATTTTATTTTTTTTTTGTTTGAGATATCAAAAATCTTTCAACTAATGCTGATTAATTCCTTACTGATTAATTGATTAATTCCTTATATTTAGTTTTTCTAAATTCTTAAATTTTCAAATTTCCGAGTTCAACGTTCTAACATTCCTCATTTTACTGAGTTTCTAGAGTTTTGAATTTTCGAAAATTGTAAAATTTTAAATTCAGAAATTCATAAGTTTGAAACATCAAAAATTCAAAATCACAGAAATTCAAAAATTCAGAAATATAGAAATTCACATTTTCCACAATTCAGAATCCTTGAATTGCAACAACAACGTCTTTCTATTCTTTTTCCGAACTACAGTAACCTTAAATTACTGTAATACATATTTCATCCATTTTTAATAAAAGGCGCATATCGTAACAACAATAGCCGCAACTGATTATGCGCCTTTAAATCAGCTGTTATCTATCAAAATACACAAAGAAACACTTACTGTTCGGTTAGGCCATAATAATCGATACTGTCCATGGCCGCCATTTACCCAAGTCCTGCAAAAAGAAGAAAAGGGGAAAAGATAAGAAAAAGAAAAGGGCCAAAATCGATAATTTTTTCCGTCGTTGAAGATGCTCATGTTTTTAATCAAATTCTGACTTTTTTTTGTAATCAAAAAAGGTAATTGGTGAGTGAAAACCATCTGACCGCGGCCGGCCGCATCGATTATGCAGTGTTGGGGTCAGAAAGTGTAAGCGAGCGGCTGCTCGCACTGACTTGCCGAAGGAGACGAGGAGGAAAAATATAACGCTTCTTTCGCTCCCTTTCTCTCTCTCTCCGCATGCCTATGGCGAAATAATAGACGCCAGAGTTTCTCTTCTTTTTTGTCTTTTTGAAAAATTGCGGTTTGATGAGGGGTGTCGGATCCTAGGCCACTCGGCCGTGTACTCCTCGTGGAGCTAGTCTCATGCTTTTT</canonical>
            <polymorphic>AAAAATTTTTAATCCTCCCAACTCCTTAAAAGATCGTCTTTTTGGCCCTCATTTTATTTTTTTTTTGTTTGAGATATCAAAAATCTTTCAACTAATGCTGATTAATTCCTTACTGATTAATTGATTAATTCCTTATATTTAGTTTTTCTAAATTCTTAAATTTTCAAATTTCCGAGTTCAACGTTCTAACATTCCTCATTTTACTGAGTTTCTAGAGTTTTGAATTTTCGAAAATTGTAAAATTTTAAATTCAGAAATTCATAAGTTTGAAACATCAAAAATTCAAAATCACAGAAATTCAAAAATTCAGAAATATAGAAATTCACATTTTCCACAATTCAGAATCCTTGAATTGCAACAACAACGTCTTTCTATTCTTTTTCCGAACTACAGTAACCTTAAATTACTGTAATACATATTTCATCCATTTTTAATAAAAGGCGCATATCGTAACAACAATAGCCGCAACTGATTATGCGCCTTTAAATCAGCTGTTATCWATCAAAATACACAAAGAAACACTTACTGTTCGGTTAGGCCATAATAATCGATACTGTCCATGGCCGCCATTTACCCAAGTCCTGCAAAAAGAAGAAAAGGGGAAAAGATAAGAAAAAGAAAAGGGCCAAAATCGATAATTTTTTCCGTCGTTGAAGATGCTCATGTTTTTAATCAAATTCTGACTTTTTTTTGTAATCAAAAAAGGTAATTGGTGAGTGAAAACCATCTGACCGCGGCCGGCCGCATCGATTATGCAGTGTTGGGGTCAGAAAGTGTAAGCGAGCGGCTGCTCGCACTGACTTGCCGAAGGAGACGAGGAGGAAAAATATAACGCTTCTTTCGCTCCCTTTCTCTCTCTCTCCGCATGCCTATGGCGAAATAATAGACGCCAGAGTTTCTCTTCTTTTTTGTCTTTTTGAAAAATTGCGGTTTGATGAGGGGTGTCGGATCCTAGGCCACTCGGCCGTGTACTCCTCGTGGAGCTAGTCTCATGCTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTTCCGAACTACAGTAACCT</pcr_primer_p1>
		<pcr_primer_p2>CCCTTTTCTTTTTCTTATCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTTTTCCGAACTACAGTAACCTTAAATTACTGTAATACATATTTCATCCATTTTTAATAAAAGGCGCATATCGTAACAACAATAGCCGCAACTGATTATGCGCCTTTAAATCAGCTGTTATCTATCAAAATACACAAAGAAACACTTACTGTTCGGTTAGGCCATAATAATCGATACTGTCCATGGCCGCCATTTACCCAAGTCCTGCAAAAAGAAGAAAAGGGGAAAAGATAAGAAAAAGAAAAGGG</canonical_amplicon>
		<polymorphic_amplicon>CTTTTTCCGAACTACAGTAACCTTAAATTACTGTAATACATATTTCATCCATTTTTAATAAAAGGCGCATATCGTAACAACAATAGCCGCAACTGATTATGCGCCTTTAAATCAGCTGTTATCWATCAAAATACACAAAGAAACACTTACTGTTCGGTTAGGCCATAATAATCGATACTGTCCATGGCCGCCATTTACCCAAGTCCTGCAAAAAGAAGAAAAGGGGAAAAGATAAGAAAAAGAAAAGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6595</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>543439</contig_pos>
        <strand></strand>
        <context>CATTTATGGT[G/A]TGATTTAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGT</left_flank>
        <right_flank>TGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTGCGAACCGAGATTTCAAGGTTCCGAAATTTTGAAATTTCGGAATTTGAGATTTTCGAAAGTTTGAAATTTTTATGATTTTGGAATTTCGAATCTCATTTTGGAAAAATGGCGGAATTTCAGAATCATGATCTCAAACTTTTTGAATTTGAAAATCTCTGAATCTAAAAATTCTAAATTATCCAGAATTTTGGACTTTCACAATTCAATCTCTAAATGTCAAAACCCTAAAACTTCAGAATCCGTTACTATAAGATTTCCAGCTGTTCAGAACCTAACGTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGTGAGAAATGTGCCAAGGATAATAAAAATTAGACAAGGATTTTGTGAGGAGCAGCTTGATAGTGACTAACAAAAATGTTTTTAATGATTTGCTT</canonical>
            <polymorphic>TCTTGCGAACCGAGATTTCAAGGTTCCGAAATTTTGAAATTTCGGAATTTGAGATTTTCGAAAGTTTGAAATTTTTATGATTTTGGAATTTCGAATCTCATTTTGGAAAAATGGCGGAATTTCAGAATCATGATCTCAAACTTTTTGAATTTGAAAATCTCTGAATCTAAAAATTCTAAATTATCCAGAATTTTGGACTTTCACAATTCAATCTCTAAATGTCAAAACCCTAAAACTTCAGAATCCGTTACTATAAGATTTCCAGCTGTTCAGAACCTAACGTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTRTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGTGAGAAATGTGCCAAGGATAATAAAAATTAGACAAGGATTTTGTGAGGAGCAGCTTGATAGTGACTAACAAAAATGTTTTTAATGATTTGCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>203 101 81 79 76 62 46 44 40 38 34 31 30 29 26 18 15 14 12 10 9 2</canonical_bands>
                <polymorphic_bands>203 116 101 81 79 62 46 44 40 34 31 30 29 26 18 15 14 12 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGGAAATTCACCGTATACTC</pcr_primer_p1>
		<pcr_primer_p2>GCCATTTTTATCAACCTTGTAG</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>ACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGC</canonical_amplicon>
		<polymorphic_amplicon>ACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTRTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6596</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>543488</contig_pos>
        <strand>+</strand>
        <context>ATTTTAGGCT[C/G]TAATATCTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCT</left_flank>
        <right_flank>TAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGATTTTCGAAAGTTTGAAATTTTTATGATTTTGGAATTTCGAATCTCATTTTGGAAAAATGGCGGAATTTCAGAATCATGATCTCAAACTTTTTGAATTTGAAAATCTCTGAATCTAAAAATTCTAAATTATCCAGAATTTTGGACTTTCACAATTCAATCTCTAAATGTCAAAACCCTAAAACTTCAGAATCCGTTACTATAAGATTTCCAGCTGTTCAGAACCTAACGTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGTGAGAAATGTGCCAAGGATAATAAAAATTAGACAAGGATTTTGTGAGGAGCAGCTTGATAGTGACTAACAAAAATGTTTTTAATGATTTGCTTTTTTTGATAATGGCTCATTAGAAATATCAGAACACAATGGGCTTTAAAT</canonical>
            <polymorphic>TGAGATTTTCGAAAGTTTGAAATTTTTATGATTTTGGAATTTCGAATCTCATTTTGGAAAAATGGCGGAATTTCAGAATCATGATCTCAAACTTTTTGAATTTGAAAATCTCTGAATCTAAAAATTCTAAATTATCCAGAATTTTGGACTTTCACAATTCAATCTCTAAATGTCAAAACCCTAAAACTTCAGAATCCGTTACTATAAGATTTCCAGCTGTTCAGAACCTAACGTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTSTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGTGAGAAATGTGCCAAGGATAATAAAAATTAGACAAGGATTTTGTGAGGAGCAGCTTGATAGTGACTAACAAAAATGTTTTTAATGATTTGCTTTTTTTGATAATGGCTCATTAGAAATATCAGAACACAATGGGCTTTAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTTTAAAAGAGCATTTATGG</pcr_primer_p1>
		<pcr_primer_p2>GCAGAAGACGTCACTACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>GGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGC</canonical_amplicon>
		<polymorphic_amplicon>GGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTSTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6597</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>543664</contig_pos>
        <strand>+</strand>
        <context>TAACCGAAAA[A/C]ATAAGAATCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAA</left_flank>
        <right_flank>ATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCCTAAAACTTCAGAATCCGTTACTATAAGATTTCCAGCTGTTCAGAACCTAACGTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGTGAGAAATGTGCCAAGGATAATAAAAATTAGACAAGGATTTTGTGAGGAGCAGCTTGATAGTGACTAACAAAAATGTTTTTAATGATTTGCTTTTTTTGATAATGGCTCATTAGAAATATCAGAACACAATGGGCTTTAAATAAGAAAAATAATGGGCGGGGGGACAGGAACAATAGGCGAAGGAGGTGAACAGTAAAAAGAAAGAAGAAGAATAAGATGAGTCAAGGTGACGTGGAAATTCTGGCAAGAACAGATCTGTGTGATGAGAAAAAATGTTCGAGATGACCGGGTACAATGGGGTTTCTAAACTATTAACT</canonical>
            <polymorphic>AACCCTAAAACTTCAGAATCCGTTACTATAAGATTTCCAGCTGTTCAGAACCTAACGTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAAMATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGTGAGAAATGTGCCAAGGATAATAAAAATTAGACAAGGATTTTGTGAGGAGCAGCTTGATAGTGACTAACAAAAATGTTTTTAATGATTTGCTTTTTTTGATAATGGCTCATTAGAAATATCAGAACACAATGGGCTTTAAATAAGAAAAATAATGGGCGGGGGGACAGGAACAATAGGCGAAGGAGGTGAACAGTAAAAAGAAAGAAGAAGAATAAGATGAGTCAAGGTGACGTGGAAATTCTGGCAAGAACAGATCTGTGTGATGAGAAAAAATGTTCGAGATGACCGGGTACAATGGGGTTTCTAAACTATTAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCATTTTTGTTTGTTTGTT</pcr_primer_p1>
		<pcr_primer_p2>ACCATTTAACGTCATCTGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGT</canonical_amplicon>
		<polymorphic_amplicon>GCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAAMATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6598</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>543798</contig_pos>
        <strand>+</strand>
        <context>CTGGAGAGAG[A/T]CTGGTGCGCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAG</left_flank>
        <right_flank>CTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGTG</right_flank>
        <qual_score>134</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGTGAGAAATGTGCCAAGGATAATAAAAATTAGACAAGGATTTTGTGAGGAGCAGCTTGATAGTGACTAACAAAAATGTTTTTAATGATTTGCTTTTTTTGATAATGGCTCATTAGAAATATCAGAACACAATGGGCTTTAAATAAGAAAAATAATGGGCGGGGGGACAGGAACAATAGGCGAAGGAGGTGAACAGTAAAAAGAAAGAAGAAGAATAAGATGAGTCAAGGTGACGTGGAAATTCTGGCAAGAACAGATCTGTGTGATGAGAAAAAATGTTCGAGATGACCGGGTACAATGGGGTTTCTAAACTATTAACTTTGAGCCCATATCTCTCCTTTTCTGTGAAAGATATCAAAAAATTGTCCACTGATAAAGTGTTTATTATATTATCACTTACATTTCATCAGTTGGAACATTTTTGATATCTTGCATTGAAACTGAGATAATTAAG</canonical>
            <polymorphic>ATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGWCTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGTGAGAAATGTGCCAAGGATAATAAAAATTAGACAAGGATTTTGTGAGGAGCAGCTTGATAGTGACTAACAAAAATGTTTTTAATGATTTGCTTTTTTTGATAATGGCTCATTAGAAATATCAGAACACAATGGGCTTTAAATAAGAAAAATAATGGGCGGGGGGACAGGAACAATAGGCGAAGGAGGTGAACAGTAAAAAGAAAGAAGAAGAATAAGATGAGTCAAGGTGACGTGGAAATTCTGGCAAGAACAGATCTGTGTGATGAGAAAAAATGTTCGAGATGACCGGGTACAATGGGGTTTCTAAACTATTAACTTTGAGCCCATATCTCTCCTTTTCTGTGAAAGATATCAAAAAATTGTCCACTGATAAAGTGTTTATTATATTATCACTTACATTTCATCAGTTGGAACATTTTTGATATCTTGCATTGAAACTGAGATAATTAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATGTCAAAAATCTGTCACTC</pcr_primer_p1>
		<pcr_primer_p2>CCCATTGTGTTCTGATATTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGTGAGAAATGTGCCAAGGATAATAAAAATTAGACAAGGATTTTGTGAGGAGCAGCTTGATAGTGACTAACAAAAATGTTTTTAATGATTTGCTTTTTTTGATAATGGCTCATTAGAAATATCAGAACACAATGGG</canonical_amplicon>
		<polymorphic_amplicon>GAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGWCTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGTGAGAAATGTGCCAAGGATAATAAAAATTAGACAAGGATTTTGTGAGGAGCAGCTTGATAGTGACTAACAAAAATGTTTTTAATGATTTGCTTTTTTTGATAATGGCTCATTAGAAATATCAGAACACAATGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6599</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>545147</contig_pos>
        <strand>+</strand>
        <context>GGAGGAGAAG[A/G]GGGAAATGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAG</left_flank>
        <right_flank>GGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCACTTTTCTTTTTCGGAAGACGAGTGGACGACGTTTTTATGAGGGCCCCATAAAAAGAGATCACTACCAAAAAATAATCTTGCTAATGGATAAACATACTATACACAGAGAACTCTTAAATTCTTGTACTCAAAAAAAAAGAAAGAAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAATGACAAAATGAGAAAATTCGAAAAGTTGGAAATTCGGAAATTGAGAAAACTCACTCCGAACTTCTGGATTTCGTAAAATGTCTGCATATTAGTGGAATTTCTTGAATTTTCGAGTTTCTAAACTCTTGAATTCATAAGTTATTGAGTGTTTGAAATGTTGAAAATTTCAATATTTGAAACGATTCACAATTCTCAAAAAGTTTTGAACAAATTCCGATTTTGGAATTTTTTAATTTCCAAAATTAGAAGA</canonical>
            <polymorphic>TTCACTTTTCTTTTTCGGAAGACGAGTGGACGACGTTTTTATGAGGGCCCCATAAAAAGAGATCACTACCAAAAAATAATCTTGCTAATGGATAAACATACTATACACAGAGAACTCTTAAATTCTTGTACTCAAAAAAAAAGAAAGAAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGRGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAATGACAAAATGAGAAAATTCGAAAAGTTGGAAATTCGGAAATTGAGAAAACTCACTCCGAACTTCTGGATTTCGTAAAATGTCTGCATATTAGTGGAATTTCTTGAATTTTCGAGTTTCTAAACTCTTGAATTCATAAGTTATTGAGTGTTTGAAATGTTGAAAATTTCAATATTTGAAACGATTCACAATTCTCAAAAAGTTTTGAACAAATTCCGATTTTGGAATTTTTTAATTTCCAAAATTAGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGAAGAAGAAGAAAGTGTCTC</pcr_primer_p1>
		<pcr_primer_p2>TGTAGCATTGCTCATCACTATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACA</canonical_amplicon>
		<polymorphic_amplicon>AGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGRGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6600</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>545080</contig_pos>
        <strand>+</strand>
        <context>GGGTCAAAAA[G/T]AAAGGAAAGY</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAA</left_flank>
        <right_flank>AAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAGAACATTCGGAAGCGGAAGACATCAAAACATATGGAAATGGACCCTTTTTGGCTAATCCTTTTTTCACTTTTCTTTTTCGGAAGACGAGTGGACGACGTTTTTATGAGGGCCCCATAAAAAGAGATCACTACCAAAAAATAATCTTGCTAATGGATAAACATACTATACACAGAGAACTCTTAAATTCTTGTACTCAAAAAAAAAGAAAGAAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAATGACAAAATGAGAAAATTCGAAAAGTTGGAAATTCGGAAATTGAGAAAACTCACTCCGAACTTCTGGATTTCGTAAAATGTCTGCATATTAGTGGAATTTCTTGAATTTTCGAGTTTCTAAACTCTTGAATTCATAAGTTATTGAGTGTTTGAAATGTTGAAAATTTCAATATTTGAAACGAT</canonical>
            <polymorphic>CCAAGAACATTCGGAAGCGGAAGACATCAAAACATATGGAAATGGACCCTTTTTGGCTAATCCTTTTTTCACTTTTCTTTTTCGGAAGACGAGTGGACGACGTTTTTATGAGGGCCCCATAAAAAGAGATCACTACCAAAAAATAATCTTGCTAATGGATAAACATACTATACACAGAGAACTCTTAAATTCTTGTACTCAAAAAAAAAGAAAGAAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAAKAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAATGACAAAATGAGAAAATTCGAAAAGTTGGAAATTCGGAAATTGAGAAAACTCACTCCGAACTTCTGGATTTCGTAAAATGTCTGCATATTAGTGGAATTTCTTGAATTTTCGAGTTTCTAAACTCTTGAATTCATAAGTTATTGAGTGTTTGAAATGTTGAAAATTTCAATATTTGAAACGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGAAGAAGAAGAAAGTGTCTC</pcr_primer_p1>
		<pcr_primer_p2>TGTAGCATTGCTCATCACTATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACA</canonical_amplicon>
		<polymorphic_amplicon>AGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAAKAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6601</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>605578</contig_pos>
        <strand>+</strand>
        <context>TGAAAAACAC[A/C]GCAACGCACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTCTATTTTTTGCAGACATCTTTTATGCAAAAGATAAAAATGAAAAACAC</left_flank>
        <right_flank>GCAACGCACGTCTGTGCTATAAATAAAGACAAAACCCTGCGTCTCTTGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTTATACTTTTAACTTTTTTCTTATAATTTTAATATTAACTTTACACTTATACTTTTTCAGAATCTAAAAACCCCCGAAAATCGCTCAAAATGAATATGATGGATAAAATCGAGAGTAACATAAGCTCGAACGTCGTCGACAATAAGCTTGACCCTCTCGACGACATTGACCCAAACAAGAAGTTGGACCGTCAGACAGGTAGCCGTGTAGCCAATGCACTTCATGCCATGCAGGATGCCATTTCTGGAGACAACTCTCATAAAACTGGCATGGCCTTCAATGATAGTGAAGAGGAAGAGCCAATGGATAAGAGAAGAGAGTCGGATGTCAACAATAAGGAAATGTGAAAGTTATGGAATCTCATTTCGCAGTTTTACCTACTGTAATAATGTAATTTTGAGCTGTAAATAAATTTTTTACTTCAAGGAAAACTAATTTTTAAAGTACTCTATTTTTTGCAGACATCTTTTATGCAAAAGATAAAAATGAAAAACACAGCAACGCACGTCTGTGCTATAAATAAAGACAAAACCCTGCGTCTCTTGGCCGTTCGCATAGTTAGAGAGAGTGTGGAAATTGCTAGAACCCGTCGGATTGTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAG</canonical>
            <polymorphic>TCTTTATACTTTTAACTTTTTTCTTATAATTTTAATATTAACTTTACACTTATACTTTTTCAGAATCTAAAAACCCCCGAAAATCGCTCAAAATGAATATGATGGATAAAATCGAGAGTAACATAAGCTCGAACGTCGTCGACAATAAGCTTGACCCTCTCGACGACATTGACCCAAACAAGAAGTTGGACCGTCAGACAGGTAGCCGTGTAGCCAATGCACTTCATGCCATGCAGGATGCCATTTCTGGAGACAACTCTCATAAAACTGGCATGGCCTTCAATGATAGTGAAGAGGAAGAGCCAATGGATAAGAGAAGAGAGTCGGATGTCAACAATAAGGAAATGTGAAAGTTATGGAATCTCATTTCGCAGTTTTACCTACTGTAATAATGTAATTTTGAGCTGTAAATAAATTTTTTACTTCAAGGAAAACTAATTTTTAAAGTACTCTATTTTTTGCAGACATCTTTTATGCAAAAGATAAAAATGAAAAACACMGCAACGCACGTCTGTGCTATAAATAAAGACAAAACCCTGCGTCTCTTGGCCGTTCGCATAGTTAGAGAGAGTGTGGAAATTGCTAGAACCCGTCGGATTGTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACAATAAGGAAATGTGAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTCCACACTCTCTCTAACTATGC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAACAATAAGGAAATGTGAAAGTTATGGAATCTCATTTCGCAGTTTTACCTACTGTAATAATGTAATTTTGAGCTGTAAATAAATTTTTTACTTCAAGGAAAACTAATTTTTAAAGTACTCTATTTTTTGCAGACATCTTTTATGCAAAAGATAAAAATGAAAAACACAGCAACGCACGTCTGTGCTATAAATAAAGACAAAACCCTGCGTCTCTTGGCCGTTCGCATAGTTAGAGAGAGTGTGGAA</canonical_amplicon>
		<polymorphic_amplicon>CAACAATAAGGAAATGTGAAAGTTATGGAATCTCATTTCGCAGTTTTACCTACTGTAATAATGTAATTTTGAGCTGTAAATAAATTTTTTACTTCAAGGAAAACTAATTTTTAAAGTACTCTATTTTTTGCAGACATCTTTTATGCAAAAGATAAAAATGAAAAACACMGCAACGCACGTCTGTGCTATAAATAAAGACAAAACCCTGCGTCTCTTGGCCGTTCGCATAGTTAGAGAGAGTGTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6602</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>605745</contig_pos>
        <strand>+</strand>
        <context>AAAGAGACAC[A/G]AAGAGAAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACAC</left_flank>
        <right_flank>AAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGACCCAAACAAGAAGTTGGACCGTCAGACAGGTAGCCGTGTAGCCAATGCACTTCATGCCATGCAGGATGCCATTTCTGGAGACAACTCTCATAAAACTGGCATGGCCTTCAATGATAGTGAAGAGGAAGAGCCAATGGATAAGAGAAGAGAGTCGGATGTCAACAATAAGGAAATGTGAAAGTTATGGAATCTCATTTCGCAGTTTTACCTACTGTAATAATGTAATTTTGAGCTGTAAATAAATTTTTTACTTCAAGGAAAACTAATTTTTAAAGTACTCTATTTTTTGCAGACATCTTTTATGCAAAAGATAAAAATGAAAAACACAGCAACGCACGTCTGTGCTATAAATAAAGACAAAACCCTGCGTCTCTTGGCCGTTCGCATAGTTAGAGAGAGTGTGGAAATTGCTAGAACCCGTCGGATTGTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTT</canonical>
            <polymorphic>ATTGACCCAAACAAGAAGTTGGACCGTCAGACAGGTAGCCGTGTAGCCAATGCACTTCATGCCATGCAGGATGCCATTTCTGGAGACAACTCTCATAAAACTGGCATGGCCTTCAATGATAGTGAAGAGGAAGAGCCAATGGATAAGAGAAGAGAGTCGGATGTCAACAATAAGGAAATGTGAAAGTTATGGAATCTCATTTCGCAGTTTTACCTACTGTAATAATGTAATTTTGAGCTGTAAATAAATTTTTTACTTCAAGGAAAACTAATTTTTAAAGTACTCTATTTTTTGCAGACATCTTTTATGCAAAAGATAAAAATGAAAAACACAGCAACGCACGTCTGTGCTATAAATAAAGACAAAACCCTGCGTCTCTTGGCCGTTCGCATAGTTAGAGAGAGTGTGGAAATTGCTAGAACCCGTCGGATTGTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACRAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGACAGTTTTTGCTGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTGGGTAGATCAAAATCAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTT</canonical_amplicon>
		<polymorphic_amplicon>GTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACRAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6603</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>605785</contig_pos>
        <strand>+</strand>
        <context>CTAGAAGCTT[C/T]TGGAAATTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTT</left_flank>
        <right_flank>TGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTAGCCAATGCACTTCATGCCATGCAGGATGCCATTTCTGGAGACAACTCTCATAAAACTGGCATGGCCTTCAATGATAGTGAAGAGGAAGAGCCAATGGATAAGAGAAGAGAGTCGGATGTCAACAATAAGGAAATGTGAAAGTTATGGAATCTCATTTCGCAGTTTTACCTACTGTAATAATGTAATTTTGAGCTGTAAATAAATTTTTTACTTCAAGGAAAACTAATTTTTAAAGTACTCTATTTTTTGCAGACATCTTTTATGCAAAAGATAAAAATGAAAAACACAGCAACGCACGTCTGTGCTATAAATAAAGACAAAACCCTGCGTCTCTTGGCCGTTCGCATAGTTAGAGAGAGTGTGGAAATTGCTAGAACCCGTCGGATTGTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATC</canonical>
            <polymorphic>GTGTAGCCAATGCACTTCATGCCATGCAGGATGCCATTTCTGGAGACAACTCTCATAAAACTGGCATGGCCTTCAATGATAGTGAAGAGGAAGAGCCAATGGATAAGAGAAGAGAGTCGGATGTCAACAATAAGGAAATGTGAAAGTTATGGAATCTCATTTCGCAGTTTTACCTACTGTAATAATGTAATTTTGAGCTGTAAATAAATTTTTTACTTCAAGGAAAACTAATTTTTAAAGTACTCTATTTTTTGCAGACATCTTTTATGCAAAAGATAAAAATGAAAAACACAGCAACGCACGTCTGTGCTATAAATAAAGACAAAACCCTGCGTCTCTTGGCCGTTCGCATAGTTAGAGAGAGTGTGGAAATTGCTAGAACCCGTCGGATTGTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTYTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGACAGTTTTTGCTGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTGGGTAGATCAAAATCAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTT</canonical_amplicon>
		<polymorphic_amplicon>GTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTYTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6604</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>605811</contig_pos>
        <strand>+</strand>
        <context>GAGAATTTGG[A/G]CTTRAAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGG</left_flank>
        <right_flank>CTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGGATGCCATTTCTGGAGACAACTCTCATAAAACTGGCATGGCCTTCAATGATAGTGAAGAGGAAGAGCCAATGGATAAGAGAAGAGAGTCGGATGTCAACAATAAGGAAATGTGAAAGTTATGGAATCTCATTTCGCAGTTTTACCTACTGTAATAATGTAATTTTGAGCTGTAAATAAATTTTTTACTTCAAGGAAAACTAATTTTTAAAGTACTCTATTTTTTGCAGACATCTTTTATGCAAAAGATAAAAATGAAAAACACAGCAACGCACGTCTGTGCTATAAATAAAGACAAAACCCTGCGTCTCTTGGCCGTTCGCATAGTTAGAGAGAGTGTGGAAATTGCTAGAACCCGTCGGATTGTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCCGTT</canonical>
            <polymorphic>CAGGATGCCATTTCTGGAGACAACTCTCATAAAACTGGCATGGCCTTCAATGATAGTGAAGAGGAAGAGCCAATGGATAAGAGAAGAGAGTCGGATGTCAACAATAAGGAAATGTGAAAGTTATGGAATCTCATTTCGCAGTTTTACCTACTGTAATAATGTAATTTTGAGCTGTAAATAAATTTTTTACTTCAAGGAAAACTAATTTTTAAAGTACTCTATTTTTTGCAGACATCTTTTATGCAAAAGATAAAAATGAAAAACACAGCAACGCACGTCTGTGCTATAAATAAAGACAAAACCCTGCGTCTCTTGGCCGTTCGCATAGTTAGAGAGAGTGTGGAAATTGCTAGAACCCGTCGGATTGTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGRCTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGACAGTTTTTGCTGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTGGGTAGATCAAAATCAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTT</canonical_amplicon>
		<polymorphic_amplicon>GTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGRCTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6605</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>605815</contig_pos>
        <strand>+</strand>
        <context>ATTTGGRCTT[A/G]AAAATTTTTW</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTT</left_flank>
        <right_flank>AAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCCATTTCTGGAGACAACTCTCATAAAACTGGCATGGCCTTCAATGATAGTGAAGAGGAAGAGCCAATGGATAAGAGAAGAGAGTCGGATGTCAACAATAAGGAAATGTGAAAGTTATGGAATCTCATTTCGCAGTTTTACCTACTGTAATAATGTAATTTTGAGCTGTAAATAAATTTTTTACTTCAAGGAAAACTAATTTTTAAAGTACTCTATTTTTTGCAGACATCTTTTATGCAAAAGATAAAAATGAAAAACACAGCAACGCACGTCTGTGCTATAAATAAAGACAAAACCCTGCGTCTCTTGGCCGTTCGCATAGTTAGAGAGAGTGTGGAAATTGCTAGAACCCGTCGGATTGTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCCGTTTGTC</canonical>
            <polymorphic>ATGCCATTTCTGGAGACAACTCTCATAAAACTGGCATGGCCTTCAATGATAGTGAAGAGGAAGAGCCAATGGATAAGAGAAGAGAGTCGGATGTCAACAATAAGGAAATGTGAAAGTTATGGAATCTCATTTCGCAGTTTTACCTACTGTAATAATGTAATTTTGAGCTGTAAATAAATTTTTTACTTCAAGGAAAACTAATTTTTAAAGTACTCTATTTTTTGCAGACATCTTTTATGCAAAAGATAAAAATGAAAAACACAGCAACGCACGTCTGTGCTATAAATAAAGACAAAACCCTGCGTCTCTTGGCCGTTCGCATAGTTAGAGAGAGTGTGGAAATTGCTAGAACCCGTCGGATTGTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTRAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCCGTTTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGACAGTTTTTGCTGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTGGGTAGATCAAAATCAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTT</canonical_amplicon>
		<polymorphic_amplicon>GTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTRAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6606</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>605825</contig_pos>
        <strand>+</strand>
        <context>RAAAATTTTT[A/T]AACATAGTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTT</left_flank>
        <right_flank>AACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAGACAACTCTCATAAAACTGGCATGGCCTTCAATGATAGTGAAGAGGAAGAGCCAATGGATAAGAGAAGAGAGTCGGATGTCAACAATAAGGAAATGTGAAAGTTATGGAATCTCATTTCGCAGTTTTACCTACTGTAATAATGTAATTTTGAGCTGTAAATAAATTTTTTACTTCAAGGAAAACTAATTTTTAAAGTACTCTATTTTTTGCAGACATCTTTTATGCAAAAGATAAAAATGAAAAACACAGCAACGCACGTCTGTGCTATAAATAAAGACAAAACCCTGCGTCTCTTGGCCGTTCGCATAGTTAGAGAGAGTGTGGAAATTGCTAGAACCCGTCGGATTGTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCCGTTTGTCTGATTTTTTT</canonical>
            <polymorphic>TGGAGACAACTCTCATAAAACTGGCATGGCCTTCAATGATAGTGAAGAGGAAGAGCCAATGGATAAGAGAAGAGAGTCGGATGTCAACAATAAGGAAATGTGAAAGTTATGGAATCTCATTTCGCAGTTTTACCTACTGTAATAATGTAATTTTGAGCTGTAAATAAATTTTTTACTTCAAGGAAAACTAATTTTTAAAGTACTCTATTTTTTGCAGACATCTTTTATGCAAAAGATAAAAATGAAAAACACAGCAACGCACGTCTGTGCTATAAATAAAGACAAAACCCTGCGTCTCTTGGCCGTTCGCATAGTTAGAGAGAGTGTGGAAATTGCTAGAACCCGTCGGATTGTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTWAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCCGTTTGTCTGATTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>371 304 195 102 24 4</canonical_bands>
                <polymorphic_bands>675 195 102 24 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGACAGTTTTTGCTGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTGGGTAGATCAAAATCAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTT</canonical_amplicon>
		<polymorphic_amplicon>GTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTWAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6607</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>605881</contig_pos>
        <strand>+</strand>
        <context>ATAAGCTTTA[C/T]GAATAAGCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTA</left_flank>
        <right_flank>GAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTTGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATGGATAAGAGAAGAGAGTCGGATGTCAACAATAAGGAAATGTGAAAGTTATGGAATCTCATTTCGCAGTTTTACCTACTGTAATAATGTAATTTTGAGCTGTAAATAAATTTTTTACTTCAAGGAAAACTAATTTTTAAAGTACTCTATTTTTTGCAGACATCTTTTATGCAAAAGATAAAAATGAAAAACACAGCAACGCACGTCTGTGCTATAAATAAAGACAAAACCCTGCGTCTCTTGGCCGTTCGCATAGTTAGAGAGAGTGTGGAAATTGCTAGAACCCGTCGGATTGTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCCGTTTGTCTGATTTTTTTTTCGATTTTCGATATTTTTCAAATTAAATTTTTTCCAGAAAATGAGTGTCATCAAT</canonical>
            <polymorphic>CAATGGATAAGAGAAGAGAGTCGGATGTCAACAATAAGGAAATGTGAAAGTTATGGAATCTCATTTCGCAGTTTTACCTACTGTAATAATGTAATTTTGAGCTGTAAATAAATTTTTTACTTCAAGGAAAACTAATTTTTAAAGTACTCTATTTTTTGCAGACATCTTTTATGCAAAAGATAAAAATGAAAAACACAGCAACGCACGTCTGTGCTATAAATAAAGACAAAACCCTGCGTCTCTTGGCCGTTCGCATAGTTAGAGAGAGTGTGGAAATTGCTAGAACCCGTCGGATTGTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTAYGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCCGTTTGTCTGATTTTTTTTTCGATTTTCGATATTTTTCAAATTAAATTTTTTCCAGAAAATGAGTGTCATCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAGTTTTTGCTGAGAATCAT</pcr_primer_p1>
		<pcr_primer_p2>AATTTTCAAATTGGGTAGATCA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTTGAAAATT</canonical_amplicon>
		<polymorphic_amplicon>GACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTAYGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTTGAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6608</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>608422</contig_pos>
        <strand>+</strand>
        <context>ATTGCCTTGA[A/T]ATAACTCGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAATGTAATTGACAGTAATTTGTCACGGAAGTCTGAATAAATTGCCTTGA</left_flank>
        <right_flank>ATAACTCGGTCATAAAATTTCAGATAGGTTTCAAAGGGAGAAAAATCAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGAGCTCAACGTGGATAGTCAGACTTTATCAAGTTTTTTCTCATAGTCCCGACTGTCTGTTCTTTCTACTTTCTTCAAATTTATTTTTTTTTCTTTCCAGAAAATGAGTTTCATCGATAAAATTGAGGACAACATTAGCAGTGCCTACGTCGAACACAAGCTCGACCCAATCGAGAAATCCCACCAACATGCTCCAGAAGTGCACGCTACTGGCGAGGACTACCACAGAGGAAGTCGTCTTTCCGATGCGTTCGTTTCTCTGAGCAATGCCATTCATGGAGATACCACTCATAAGACTGGAGAAGCATTCAATGATGCCAATGAGGATGATGATATGGAGAGAAAAATGTCAATGAGCAAGGAAATGTGACTGGAAGTGGCACACAGTTGTTTTGGAAGTGCTAGTTAATGAATCGGTTGCTTGTAAATATCATTTGTATAATTATTAATGTAATTGACAGTAATTTGTCACGGAAGTCTGAATAAATTGCCTTGATATAACTCGGTCATAAAATTTCAGATAGGTTTCAAAGGGAGAAAAATCAAGGCACCGTAAAACCTGCAACAGAAGAGCCCACTTACTTATATCTTTGAGACAACATATCTCGGTTCATGTGATCGATATATAAAAGCTTTAAAGTGATGAAATGTTTATCACAATATCACAAACATTTTATCAGTTGGCACGTTCTTGATATCTTGCGTAGAAGCTAGGAAAAATTAGCTCGATCTTGACAGTGTGGGACCCTTCTATTATAGGTTTTACGGTAATAAGTTTGGAAAAAATTGATTGATCTAGTAAAATGCGGAAATTCAATAATGAAGTTTTTTGACTCGTCCACTAGCATGAAAAAATATAGTTTTATCACAAAAAGGGTTTTTTATTCTTAAATTTCCAGAAGAACTACATTTTTTGAAATCTTGAGAATTTGCTGTTTCAGACAAACTCTCTTTTTATTTGAACCGTATTTTCTTCAAACCTATTTTTTGATAATAT</canonical>
            <polymorphic>AATTGAGCTCAACGTGGATAGTCAGACTTTATCAAGTTTTTTCTCATAGTCCCGACTGTCTGTTCTTTCTACTTTCTTCAAATTTATTTTTTTTTCTTTCCAGAAAATGAGTTTCATCGATAAAATTGAGGACAACATTAGCAGTGCCTACGTCGAACACAAGCTCGACCCAATCGAGAAATCCCACCAACATGCTCCAGAAGTGCACGCTACTGGCGAGGACTACCACAGAGGAAGTCGTCTTTCCGATGCGTTCGTTTCTCTGAGCAATGCCATTCATGGAGATACCACTCATAAGACTGGAGAAGCATTCAATGATGCCAATGAGGATGATGATATGGAGAGAAAAATGTCAATGAGCAAGGAAATGTGACTGGAAGTGGCACACAGTTGTTTTGGAAGTGCTAGTTAATGAATCGGTTGCTTGTAAATATCATTTGTATAATTATTAATGTAATTGACAGTAATTTGTCACGGAAGTCTGAATAAATTGCCTTGAWATAACTCGGTCATAAAATTTCAGATAGGTTTCAAAGGGAGAAAAATCAAGGCACCGTAAAACCTGCAACAGAAGAGCCCACTTACTTATATCTTTGAGACAACATATCTCGGTTCATGTGATCGATATATAAAAGCTTTAAAGTGATGAAATGTTTATCACAATATCACAAACATTTTATCAGTTGGCACGTTCTTGATATCTTGCGTAGAAGCTAGGAAAAATTAGCTCGATCTTGACAGTGTGGGACCCTTCTATTATAGGTTTTACGGTAATAAGTTTGGAAAAAATTGATTGATCTAGTAAAATGCGGAAATTCAATAATGAAGTTTTTTGACTCGTCCACTAGCATGAAAAAATATAGTTTTATCACAAAAAGGGTTTTTTATTCTTAAATTTCCAGAAGAACTACATTTTTTGAAATCTTGAGAATTTGCTGTTTCAGACAAACTCTCTTTTTATTTGAACCGTATTTTCTTCAAACCTATTTTTTGATAATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTGCTTGTAAATATCATTTGT</pcr_primer_p1>
		<pcr_primer_p2>CGCATTTTACTAGATCAATCAAT</pcr_primer_p2>
		<pcr_amplicon_size>393</pcr_amplicon_size>
		<canonical_amplicon>GGTTGCTTGTAAATATCATTTGTATAATTATTAATGTAATTGACAGTAATTTGTCACGGAAGTCTGAATAAATTGCCTTGATATAACTCGGTCATAAAATTTCAGATAGGTTTCAAAGGGAGAAAAATCAAGGCACCGTAAAACCTGCAACAGAAGAGCCCACTTACTTATATCTTTGAGACAACATATCTCGGTTCATGTGATCGATATATAAAAGCTTTAAAGTGATGAAATGTTTATCACAATATCACAAACATTTTATCAGTTGGCACGTTCTTGATATCTTGCGTAGAAGCTAGGAAAAATTAGCTCGATCTTGACAGTGTGGGACCCTTCTATTATAGGTTTTACGGTAATAAGTTTGGAAAAAATTGATTGATCTAGTAAAATGCG</canonical_amplicon>
		<polymorphic_amplicon>GGTTGCTTGTAAATATCATTTGTATAATTATTAATGTAATTGACAGTAATTTGTCACGGAAGTCTGAATAAATTGCCTTGAWATAACTCGGTCATAAAATTTCAGATAGGTTTCAAAGGGAGAAAAATCAAGGCACCGTAAAACCTGCAACAGAAGAGCCCACTTACTTATATCTTTGAGACAACATATCTCGGTTCATGTGATCGATATATAAAAGCTTTAAAGTGATGAAATGTTTATCACAATATCACAAACATTTTATCAGTTGGCACGTTCTTGATATCTTGCGTAGAAGCTAGGAAAAATTAGCTCGATCTTGACAGTGTGGGACCCTTCTATTATAGGTTTTACGGTAATAAGTTTGGAAAAAATTGATTGATCTAGTAAAATGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6609</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>608245</contig_pos>
        <strand>+</strand>
        <context>CAATGATGCC[A/G]ATGAGGATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCATTCATGGAGATACCACTCATAAGACTGGAGAAGCATTCAATGATGCC</left_flank>
        <right_flank>ATGAGGATGATGATATGGAGAGAAAAATGTCAATGAGCAAGGAAATGTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACACTCAGAGTGAAACTACCGTGTTTGCTTCAATAGAACCCGACCAACGTTGAGCTCAATTATCTCGATTCTTAAGCAAGTTATCAGAAATCTGTTAACTGATCAAATATTTGTAATTTTATGATAAACAATTTATTACTTGACCAATTTTTGGCATCTATCATAGGAACCGAGATAATTGAGCTCAACGTGGATAGTCAGACTTTATCAAGTTTTTTCTCATAGTCCCGACTGTCTGTTCTTTCTACTTTCTTCAAATTTATTTTTTTTTCTTTCCAGAAAATGAGTTTCATCGATAAAATTGAGGACAACATTAGCAGTGCCTACGTCGAACACAAGCTCGACCCAATCGAGAAATCCCACCAACATGCTCCAGAAGTGCACGCTACTGGCGAGGACTACCACAGAGGAAGTCGTCTTTCCGATGCGTTCGTTTCTCTGAGCAATGCCATTCATGGAGATACCACTCATAAGACTGGAGAAGCATTCAATGATGCCAATGAGGATGATGATATGGAGAGAAAAATGTCAATGAGCAAGGAAATGTGACTGGAAGTGGCACACAGTTGTTTTGGAAGTGCTAGTTAATGAATCGGTTGCTTGTAAATATCATTTGTATAATTATTAATGTAATTGACAGTAATTTGTCACGGAAGTCTGAATAAATTGCCTTGATATAACTCGGTCATAAAATTTCAGATAGGTTTCAAAGGGAGAAAAATCAAGGCACCGTAAAACCTGCAACAGAAGAGCCCACTTACTTATATCTTTGAGACAACATATCTCGGTTCATGTGATCGATATATAAAAGCTTTAAAGTGATGAAATGTTTATCACAATATCACAAACATTTTATCAGTTGGCACGTTCTTGATATCTTGCGTAGAAGCTAGGAAAAATTAGCTCGATCTTGACAGTGTGGGACCCTTCTATTATAGGTTTTACGGTAATAAGTTTGGAAAAAATTGATTGATCTAGTAAAATGCGGAAATTCAATAA</canonical>
            <polymorphic>GACACTCAGAGTGAAACTACCGTGTTTGCTTCAATAGAACCCGACCAACGTTGAGCTCAATTATCTCGATTCTTAAGCAAGTTATCAGAAATCTGTTAACTGATCAAATATTTGTAATTTTATGATAAACAATTTATTACTTGACCAATTTTTGGCATCTATCATAGGAACCGAGATAATTGAGCTCAACGTGGATAGTCAGACTTTATCAAGTTTTTTCTCATAGTCCCGACTGTCTGTTCTTTCTACTTTCTTCAAATTTATTTTTTTTTCTTTCCAGAAAATGAGTTTCATCGATAAAATTGAGGACAACATTAGCAGTGCCTACGTCGAACACAAGCTCGACCCAATCGAGAAATCCCACCAACATGCTCCAGAAGTGCACGCTACTGGCGAGGACTACCACAGAGGAAGTCGTCTTTCCGATGCGTTCGTTTCTCTGAGCAATGCCATTCATGGAGATACCACTCATAAGACTGGAGAAGCATTCAATGATGCCRATGAGGATGATGATATGGAGAGAAAAATGTCAATGAGCAAGGAAATGTGACTGGAAGTGGCACACAGTTGTTTTGGAAGTGCTAGTTAATGAATCGGTTGCTTGTAAATATCATTTGTATAATTATTAATGTAATTGACAGTAATTTGTCACGGAAGTCTGAATAAATTGCCTTGATATAACTCGGTCATAAAATTTCAGATAGGTTTCAAAGGGAGAAAAATCAAGGCACCGTAAAACCTGCAACAGAAGAGCCCACTTACTTATATCTTTGAGACAACATATCTCGGTTCATGTGATCGATATATAAAAGCTTTAAAGTGATGAAATGTTTATCACAATATCACAAACATTTTATCAGTTGGCACGTTCTTGATATCTTGCGTAGAAGCTAGGAAAAATTAGCTCGATCTTGACAGTGTGGGACCCTTCTATTATAGGTTTTACGGTAATAAGTTTGGAAAAAATTGATTGATCTAGTAAAATGCGGAAATTCAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGAGGACAACATTAGCAGT</pcr_primer_p1>
		<pcr_primer_p2>GTCACATTTCCTTGCTCATT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATTGAGGACAACATTAGCAGTGCCTACGTCGAACACAAGCTCGACCCAATCGAGAAATCCCACCAACATGCTCCAGAAGTGCACGCTACTGGCGAGGACTACCACAGAGGAAGTCGTCTTTCCGATGCGTTCGTTTCTCTGAGCAATGCCATTCATGGAGATACCACTCATAAGACTGGAGAAGCATTCAATGATGCCAATGAGGATGATGATATGGAGAGAAAAATGTCAATGAGCAAGGAAATGTGAC</canonical_amplicon>
		<polymorphic_amplicon>AATTGAGGACAACATTAGCAGTGCCTACGTCGAACACAAGCTCGACCCAATCGAGAAATCCCACCAACATGCTCCAGAAGTGCACGCTACTGGCGAGGACTACCACAGAGGAAGTCGTCTTTCCGATGCGTTCGTTTCTCTGAGCAATGCCATTCATGGAGATACCACTCATAAGACTGGAGAAGCATTCAATGATGCCRATGAGGATGATGATATGGAGAGAAAAATGTCAATGAGCAAGGAAATGTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6610</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>608211</contig_pos>
        <strand>+</strand>
        <context>ATGGAGATAC[A/C]ACTCATAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGTCTTTCCGATGCGTTCGTTTCTCTGAGCAATGCCATTCATGGAGATAC</left_flank>
        <right_flank>ACTCATAAGACTGGAGAAGCATTCAATGATGCCAATGAGGATGATGATAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCCCAGCAAATGAGATAAATTGGCTCAAAATTGACACTCAGAGTGAAACTACCGTGTTTGCTTCAATAGAACCCGACCAACGTTGAGCTCAATTATCTCGATTCTTAAGCAAGTTATCAGAAATCTGTTAACTGATCAAATATTTGTAATTTTATGATAAACAATTTATTACTTGACCAATTTTTGGCATCTATCATAGGAACCGAGATAATTGAGCTCAACGTGGATAGTCAGACTTTATCAAGTTTTTTCTCATAGTCCCGACTGTCTGTTCTTTCTACTTTCTTCAAATTTATTTTTTTTTCTTTCCAGAAAATGAGTTTCATCGATAAAATTGAGGACAACATTAGCAGTGCCTACGTCGAACACAAGCTCGACCCAATCGAGAAATCCCACCAACATGCTCCAGAAGTGCACGCTACTGGCGAGGACTACCACAGAGGAAGTCGTCTTTCCGATGCGTTCGTTTCTCTGAGCAATGCCATTCATGGAGATACCACTCATAAGACTGGAGAAGCATTCAATGATGCCAATGAGGATGATGATATGGAGAGAAAAATGTCAATGAGCAAGGAAATGTGACTGGAAGTGGCACACAGTTGTTTTGGAAGTGCTAGTTAATGAATCGGTTGCTTGTAAATATCATTTGTATAATTATTAATGTAATTGACAGTAATTTGTCACGGAAGTCTGAATAAATTGCCTTGATATAACTCGGTCATAAAATTTCAGATAGGTTTCAAAGGGAGAAAAATCAAGGCACCGTAAAACCTGCAACAGAAGAGCCCACTTACTTATATCTTTGAGACAACATATCTCGGTTCATGTGATCGATATATAAAAGCTTTAAAGTGATGAAATGTTTATCACAATATCACAAACATTTTATCAGTTGGCACGTTCTTGATATCTTGCGTAGAAGCTAGGAAAAATTAGCTCGATCTTGACAGTGTGGGACCCTTCTATTATAGGTTTTACGGTAATAAGTTTGGAAAAAA</canonical>
            <polymorphic>TTTCCCAGCAAATGAGATAAATTGGCTCAAAATTGACACTCAGAGTGAAACTACCGTGTTTGCTTCAATAGAACCCGACCAACGTTGAGCTCAATTATCTCGATTCTTAAGCAAGTTATCAGAAATCTGTTAACTGATCAAATATTTGTAATTTTATGATAAACAATTTATTACTTGACCAATTTTTGGCATCTATCATAGGAACCGAGATAATTGAGCTCAACGTGGATAGTCAGACTTTATCAAGTTTTTTCTCATAGTCCCGACTGTCTGTTCTTTCTACTTTCTTCAAATTTATTTTTTTTTCTTTCCAGAAAATGAGTTTCATCGATAAAATTGAGGACAACATTAGCAGTGCCTACGTCGAACACAAGCTCGACCCAATCGAGAAATCCCACCAACATGCTCCAGAAGTGCACGCTACTGGCGAGGACTACCACAGAGGAAGTCGTCTTTCCGATGCGTTCGTTTCTCTGAGCAATGCCATTCATGGAGATACMACTCATAAGACTGGAGAAGCATTCAATGATGCCAATGAGGATGATGATATGGAGAGAAAAATGTCAATGAGCAAGGAAATGTGACTGGAAGTGGCACACAGTTGTTTTGGAAGTGCTAGTTAATGAATCGGTTGCTTGTAAATATCATTTGTATAATTATTAATGTAATTGACAGTAATTTGTCACGGAAGTCTGAATAAATTGCCTTGATATAACTCGGTCATAAAATTTCAGATAGGTTTCAAAGGGAGAAAAATCAAGGCACCGTAAAACCTGCAACAGAAGAGCCCACTTACTTATATCTTTGAGACAACATATCTCGGTTCATGTGATCGATATATAAAAGCTTTAAAGTGATGAAATGTTTATCACAATATCACAAACATTTTATCAGTTGGCACGTTCTTGATATCTTGCGTAGAAGCTAGGAAAAATTAGCTCGATCTTGACAGTGTGGGACCCTTCTATTATAGGTTTTACGGTAATAAGTTTGGAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>169 130 82 79 70 62 54 44 40 38 27 27 25 21 21 19 17 15 13 11 10 9 8 3 2 2 2</canonical_bands>
                <polymorphic_bands>169 144 130 79 70 54 44 40 38 27 27 25 21 21 19 17 15 13 11 10 9 8 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAGAAAATGAGTTTCATC</pcr_primer_p1>
		<pcr_primer_p2>TTCTCTCCATATCATCATCCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAGAAAATGAGTTTCATCGATAAAATTGAGGACAACATTAGCAGTGCCTACGTCGAACACAAGCTCGACCCAATCGAGAAATCCCACCAACATGCTCCAGAAGTGCACGCTACTGGCGAGGACTACCACAGAGGAAGTCGTCTTTCCGATGCGTTCGTTTCTCTGAGCAATGCCATTCATGGAGATACCACTCATAAGACTGGAGAAGCATTCAATGATGCCAATGAGGATGATGATATGGAGAGAA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAGAAAATGAGTTTCATCGATAAAATTGAGGACAACATTAGCAGTGCCTACGTCGAACACAAGCTCGACCCAATCGAGAAATCCCACCAACATGCTCCAGAAGTGCACGCTACTGGCGAGGACTACCACAGAGGAAGTCGTCTTTCCGATGCGTTCGTTTCTCTGAGCAATGCCATTCATGGAGATACMACTCATAAGACTGGAGAAGCATTCAATGATGCCAATGAGGATGATGATATGGAGAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6611</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>608852</contig_pos>
        <strand>+</strand>
        <context>AAATCTTGAG[A/G]ATTTGCTGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTTTTATTCTTAAATTTCCAGAAGAACTACATTTTTTGAAATCTTGAG</left_flank>
        <right_flank>ATTTGCTGTTTCAGACAAACTCTCTTTTTATTTGAACCGTATTTTCTTCA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATCATTTGTATAATTATTAATGTAATTGACAGTAATTTGTCACGGAAGTCTGAATAAATTGCCTTGATATAACTCGGTCATAAAATTTCAGATAGGTTTCAAAGGGAGAAAAATCAAGGCACCGTAAAACCTGCAACAGAAGAGCCCACTTACTTATATCTTTGAGACAACATATCTCGGTTCATGTGATCGATATATAAAAGCTTTAAAGTGATGAAATGTTTATCACAATATCACAAACATTTTATCAGTTGGCACGTTCTTGATATCTTGCGTAGAAGCTAGGAAAAATTAGCTCGATCTTGACAGTGTGGGACCCTTCTATTATAGGTTTTACGGTAATAAGTTTGGAAAAAATTGATTGATCTAGTAAAATGCGGAAATTCAATAATGAAGTTTTTTGACTCGTCCACTAGCATGAAAAAATATAGTTTTATCACAAAAAGGGTTTTTTATTCTTAAATTTCCAGAAGAACTACATTTTTTGAAATCTTGAGAATTTGCTGTTTCAGACAAACTCTCTTTTTATTTGAACCGTATTTTCTTCAAACCTATTTTTTGATAATATATTATGAAAGAAATTAACTTCAAATTTATAGCATTTTTGATATTCCAAAAAATCTTCAATCTTCTGTCAATTTTTTTTCTAAAAATGACCCGAGTTTTGCCCAAAACTGTGCAAATAAAAGAATCCTTTGGCTCTAGACCACTGTGTTATTTCTTTTTTTGGTGTGGAAACATGATTATTCCCAAGTTCCGCCCATTTAGATCGAGACTATAAAAGATCGGAGTAAGAGAAGGTGGAGACTCGGCATTGTGCAACATTTGAAAAAGCCGTCTTATTTCATTTGAACAAGTTTTTAAAGATTCAAAACTGTTTCGGCAAGCCTTTCCGAATCCCTCAAAGTTTTCATTTGGTACTCTAAACTACACATGCAGTAAAACCCTGTAAGAAAAGGGCTCCCAACTTTCAACTTTGACCCAATTTATCTCGGTTC</canonical>
            <polymorphic>ATATCATTTGTATAATTATTAATGTAATTGACAGTAATTTGTCACGGAAGTCTGAATAAATTGCCTTGATATAACTCGGTCATAAAATTTCAGATAGGTTTCAAAGGGAGAAAAATCAAGGCACCGTAAAACCTGCAACAGAAGAGCCCACTTACTTATATCTTTGAGACAACATATCTCGGTTCATGTGATCGATATATAAAAGCTTTAAAGTGATGAAATGTTTATCACAATATCACAAACATTTTATCAGTTGGCACGTTCTTGATATCTTGCGTAGAAGCTAGGAAAAATTAGCTCGATCTTGACAGTGTGGGACCCTTCTATTATAGGTTTTACGGTAATAAGTTTGGAAAAAATTGATTGATCTAGTAAAATGCGGAAATTCAATAATGAAGTTTTTTGACTCGTCCACTAGCATGAAAAAATATAGTTTTATCACAAAAAGGGTTTTTTATTCTTAAATTTCCAGAAGAACTACATTTTTTGAAATCTTGAGRATTTGCTGTTTCAGACAAACTCTCTTTTTATTTGAACCGTATTTTCTTCAAACCTATTTTTTGATAATATATTATGAAAGAAATTAACTTCAAATTTATAGCATTTTTGATATTCCAAAAAATCTTCAATCTTCTGTCAATTTTTTTTCTAAAAATGACCCGAGTTTTGCCCAAAACTGTGCAAATAAAAGAATCCTTTGGCTCTAGACCACTGTGTTATTTCTTTTTTTGGTGTGGAAACATGATTATTCCCAAGTTCCGCCCATTTAGATCGAGACTATAAAAGATCGGAGTAAGAGAAGGTGGAGACTCGGCATTGTGCAACATTTGAAAAAGCCGTCTTATTTCATTTGAACAAGTTTTTAAAGATTCAAAACTGTTTCGGCAAGCCTTTCCGAATCCCTCAAAGTTTTCATTTGGTACTCTAAACTACACATGCAGTAAAACCCTGTAAGAAAAGGGCTCCCAACTTTCAACTTTGACCCAATTTATCTCGGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>408 298 93 85 80 36</canonical_bands>
                <polymorphic_bands>408 298 129 85 80</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>347 206 82 80 66 46 36 27 26 23 15 13 12 11 10</canonical_bands>
                <polymorphic_bands>347 206 118 80 66 46 27 26 23 15 13 12 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTAAAATGCGGAAATTCAATA</pcr_primer_p1>
		<pcr_primer_p2>TTTGGAATATCAAAAATGCTATAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGTAAAATGCGGAAATTCAATAATGAAGTTTTTTGACTCGTCCACTAGCATGAAAAAATATAGTTTTATCACAAAAAGGGTTTTTTATTCTTAAATTTCCAGAAGAACTACATTTTTTGAAATCTTGAGAATTTGCTGTTTCAGACAAACTCTCTTTTTATTTGAACCGTATTTTCTTCAAACCTATTTTTTGATAATATATTATGAAAGAAATTAACTTCAAATTTATAGCATTTTTGATATTCCAAA</canonical_amplicon>
		<polymorphic_amplicon>AGTAAAATGCGGAAATTCAATAATGAAGTTTTTTGACTCGTCCACTAGCATGAAAAAATATAGTTTTATCACAAAAAGGGTTTTTTATTCTTAAATTTCCAGAAGAACTACATTTTTTGAAATCTTGAGRATTTGCTGTTTCAGACAAACTCTCTTTTTATTTGAACCGTATTTTCTTCAAACCTATTTTTTGATAATATATTATGAAAGAAATTAACTTCAAATTTATAGCATTTTTGATATTCCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6612</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>608916</contig_pos>
        <strand>+</strand>
        <context>CTATTTTTTG[A/C]TAATATATTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GACAAACTCTCTTTTTATTTGAACCGTATTTTCTTCAAACCTATTTTTTG</left_flank>
        <right_flank>TAATATATTATGAAAGAAATTAACTTCAAATTTATAGCATTTTTGATATT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGATATAACTCGGTCATAAAATTTCAGATAGGTTTCAAAGGGAGAAAAATCAAGGCACCGTAAAACCTGCAACAGAAGAGCCCACTTACTTATATCTTTGAGACAACATATCTCGGTTCATGTGATCGATATATAAAAGCTTTAAAGTGATGAAATGTTTATCACAATATCACAAACATTTTATCAGTTGGCACGTTCTTGATATCTTGCGTAGAAGCTAGGAAAAATTAGCTCGATCTTGACAGTGTGGGACCCTTCTATTATAGGTTTTACGGTAATAAGTTTGGAAAAAATTGATTGATCTAGTAAAATGCGGAAATTCAATAATGAAGTTTTTTGACTCGTCCACTAGCATGAAAAAATATAGTTTTATCACAAAAAGGGTTTTTTATTCTTAAATTTCCAGAAGAACTACATTTTTTGAAATCTTGAGAATTTGCTGTTTCAGACAAACTCTCTTTTTATTTGAACCGTATTTTCTTCAAACCTATTTTTTGATAATATATTATGAAAGAAATTAACTTCAAATTTATAGCATTTTTGATATTCCAAAAAATCTTCAATCTTCTGTCAATTTTTTTTCTAAAAATGACCCGAGTTTTGCCCAAAACTGTGCAAATAAAAGAATCCTTTGGCTCTAGACCACTGTGTTATTTCTTTTTTTGGTGTGGAAACATGATTATTCCCAAGTTCCGCCCATTTAGATCGAGACTATAAAAGATCGGAGTAAGAGAAGGTGGAGACTCGGCATTGTGCAACATTTGAAAAAGCCGTCTTATTTCATTTGAACAAGTTTTTAAAGATTCAAAACTGTTTCGGCAAGCCTTTCCGAATCCCTCAAAGTTTTCATTTGGTACTCTAAACTACACATGCAGTAAAACCCTGTAAGAAAAGGGCTCCCAACTTTCAACTTTGACCCAATTTATCTCGGTTCTCGTAAAAGATACCAGAAAATGTACAACTGATTAATTGTTTATCGTAATCTCACGACCATTTTA</canonical>
            <polymorphic>CTTGATATAACTCGGTCATAAAATTTCAGATAGGTTTCAAAGGGAGAAAAATCAAGGCACCGTAAAACCTGCAACAGAAGAGCCCACTTACTTATATCTTTGAGACAACATATCTCGGTTCATGTGATCGATATATAAAAGCTTTAAAGTGATGAAATGTTTATCACAATATCACAAACATTTTATCAGTTGGCACGTTCTTGATATCTTGCGTAGAAGCTAGGAAAAATTAGCTCGATCTTGACAGTGTGGGACCCTTCTATTATAGGTTTTACGGTAATAAGTTTGGAAAAAATTGATTGATCTAGTAAAATGCGGAAATTCAATAATGAAGTTTTTTGACTCGTCCACTAGCATGAAAAAATATAGTTTTATCACAAAAAGGGTTTTTTATTCTTAAATTTCCAGAAGAACTACATTTTTTGAAATCTTGAGAATTTGCTGTTTCAGACAAACTCTCTTTTTATTTGAACCGTATTTTCTTCAAACCTATTTTTTGMTAATATATTATGAAAGAAATTAACTTCAAATTTATAGCATTTTTGATATTCCAAAAAATCTTCAATCTTCTGTCAATTTTTTTTCTAAAAATGACCCGAGTTTTGCCCAAAACTGTGCAAATAAAAGAATCCTTTGGCTCTAGACCACTGTGTTATTTCTTTTTTTGGTGTGGAAACATGATTATTCCCAAGTTCCGCCCATTTAGATCGAGACTATAAAAGATCGGAGTAAGAGAAGGTGGAGACTCGGCATTGTGCAACATTTGAAAAAGCCGTCTTATTTCATTTGAACAAGTTTTTAAAGATTCAAAACTGTTTCGGCAAGCCTTTCCGAATCCCTCAAAGTTTTCATTTGGTACTCTAAACTACACATGCAGTAAAACCCTGTAAGAAAAGGGCTCCCAACTTTCAACTTTGACCCAATTTATCTCGGTTCTCGTAAAAGATACCAGAAAATGTACAACTGATTAATTGTTTATCGTAATCTCACGACCATTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTAAATTTCCAGAAGAACTACA</pcr_primer_p1>
		<pcr_primer_p2>CTAGAGCCAAAGGATTCTTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTTAAATTTCCAGAAGAACTACATTTTTTGAAATCTTGAGAATTTGCTGTTTCAGACAAACTCTCTTTTTATTTGAACCGTATTTTCTTCAAACCTATTTTTTGATAATATATTATGAAAGAAATTAACTTCAAATTTATAGCATTTTTGATATTCCAAAAAATCTTCAATCTTCTGTCAATTTTTTTTCTAAAAATGACCCGAGTTTTGCCCAAAACTGTGCAAATAAAAGAATCCTTTGGCTCTAG</canonical_amplicon>
		<polymorphic_amplicon>TCTTAAATTTCCAGAAGAACTACATTTTTTGAAATCTTGAGAATTTGCTGTTTCAGACAAACTCTCTTTTTATTTGAACCGTATTTTCTTCAAACCTATTTTTTGMTAATATATTATGAAAGAAATTAACTTCAAATTTATAGCATTTTTGATATTCCAAAAAATCTTCAATCTTCTGTCAATTTTTTTTCTAAAAATGACCCGAGTTTTGCCCAAAACTGTGCAAATAAAAGAATCCTTTGGCTCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6613</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>609086</contig_pos>
        <strand>+</strand>
        <context>TTTTTTTGGT[G/T]TGRAAACATG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATAAAAGAATCCTTTGGCTCTAGACCACTGTGTTATTTCTTTTTTTGGT</left_flank>
        <right_flank>TGGAAACATGATTATTCCCAAGTTCCGCCCATTTAGATCGAGACTATAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCACAAACATTTTATCAGTTGGCACGTTCTTGATATCTTGCGTAGAAGCTAGGAAAAATTAGCTCGATCTTGACAGTGTGGGACCCTTCTATTATAGGTTTTACGGTAATAAGTTTGGAAAAAATTGATTGATCTAGTAAAATGCGGAAATTCAATAATGAAGTTTTTTGACTCGTCCACTAGCATGAAAAAATATAGTTTTATCACAAAAAGGGTTTTTTATTCTTAAATTTCCAGAAGAACTACATTTTTTGAAATCTTGAGAATTTGCTGTTTCAGACAAACTCTCTTTTTATTTGAACCGTATTTTCTTCAAACCTATTTTTTGATAATATATTATGAAAGAAATTAACTTCAAATTTATAGCATTTTTGATATTCCAAAAAATCTTCAATCTTCTGTCAATTTTTTTTCTAAAAATGACCCGAGTTTTGCCCAAAACTGTGCAAATAAAAGAATCCTTTGGCTCTAGACCACTGTGTTATTTCTTTTTTTGGTGTGGAAACATGATTATTCCCAAGTTCCGCCCATTTAGATCGAGACTATAAAAGATCGGAGTAAGAGAAGGTGGAGACTCGGCATTGTGCAACATTTGAAAAAGCCGTCTTATTTCATTTGAACAAGTTTTTAAAGATTCAAAACTGTTTCGGCAAGCCTTTCCGAATCCCTCAAAGTTTTCATTTGGTACTCTAAACTACACATGCAGTAAAACCCTGTAAGAAAAGGGCTCCCAACTTTCAACTTTGACCCAATTTATCTCGGTTCTCGTAAAAGATACCAGAAAATGTACAACTGATTAATTGTTTATCGTAATCTCACGACCATTTTATCAGTTTTCAAAATTTTGATATCTGCCATAGGAACCGAGATTATAAGGCTTGAAGTATAGGGTGGGGTTCTATTTGAGCATTTAAAGCGTCTCTTCTTCAAAGCAATATCAAATCACTAATCTCTCATTCCCAATAACCCCTCTGGTTTCCAGTGTTCACATTCTCCCGC</canonical>
            <polymorphic>ATCACAAACATTTTATCAGTTGGCACGTTCTTGATATCTTGCGTAGAAGCTAGGAAAAATTAGCTCGATCTTGACAGTGTGGGACCCTTCTATTATAGGTTTTACGGTAATAAGTTTGGAAAAAATTGATTGATCTAGTAAAATGCGGAAATTCAATAATGAAGTTTTTTGACTCGTCCACTAGCATGAAAAAATATAGTTTTATCACAAAAAGGGTTTTTTATTCTTAAATTTCCAGAAGAACTACATTTTTTGAAATCTTGAGAATTTGCTGTTTCAGACAAACTCTCTTTTTATTTGAACCGTATTTTCTTCAAACCTATTTTTTGATAATATATTATGAAAGAAATTAACTTCAAATTTATAGCATTTTTGATATTCCAAAAAATCTTCAATCTTCTGTCAATTTTTTTTCTAAAAATGACCCGAGTTTTGCCCAAAACTGTGCAAATAAAAGAATCCTTTGGCTCTAGACCACTGTGTTATTTCTTTTTTTGGTKTGGAAACATGATTATTCCCAAGTTCCGCCCATTTAGATCGAGACTATAAAAGATCGGAGTAAGAGAAGGTGGAGACTCGGCATTGTGCAACATTTGAAAAAGCCGTCTTATTTCATTTGAACAAGTTTTTAAAGATTCAAAACTGTTTCGGCAAGCCTTTCCGAATCCCTCAAAGTTTTCATTTGGTACTCTAAACTACACATGCAGTAAAACCCTGTAAGAAAAGGGCTCCCAACTTTCAACTTTGACCCAATTTATCTCGGTTCTCGTAAAAGATACCAGAAAATGTACAACTGATTAATTGTTTATCGTAATCTCACGACCATTTTATCAGTTTTCAAAATTTTGATATCTGCCATAGGAACCGAGATTATAAGGCTTGAAGTATAGGGTGGGGTTCTATTTGAGCATTTAAAGCGTCTCTTCTTCAAAGCAATATCAAATCACTAATCTCTCATTCCCAATAACCCCTCTGGTTTCCAGTGTTCACATTCTCCCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>240 119 113 99 75 69 54 52 39 30 27 21 18 16 11 5 4 4 2 2</canonical_bands>
                <polymorphic_bands>240 119 113 99 89 75 54 52 39 30 27 21 16 11 5 4 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACTGTGCAAATAAAAGAATC</pcr_primer_p1>
		<pcr_primer_p2>GAGTACCAAATGAAAACTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAAACTGTGCAAATAAAAGAATCCTTTGGCTCTAGACCACTGTGTTATTTCTTTTTTTGGTGTGGAAACATGATTATTCCCAAGTTCCGCCCATTTAGATCGAGACTATAAAAGATCGGAGTAAGAGAAGGTGGAGACTCGGCATTGTGCAACATTTGAAAAAGCCGTCTTATTTCATTTGAACAAGTTTTTAAAGATTCAAAACTGTTTCGGCAAGCCTTTCCGAATCCCTCAAAGTTTTCATTTGGTACTC</canonical_amplicon>
		<polymorphic_amplicon>AAAACTGTGCAAATAAAAGAATCCTTTGGCTCTAGACCACTGTGTTATTTCTTTTTTTGGTKTGGAAACATGATTATTCCCAAGTTCCGCCCATTTAGATCGAGACTATAAAAGATCGGAGTAAGAGAAGGTGGAGACTCGGCATTGTGCAACATTTGAAAAAGCCGTCTTATTTCATTTGAACAAGTTTTTAAAGATTCAAAACTGTTTCGGCAAGCCTTTCCGAATCCCTCAAAGTTTTCATTTGGTACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6614</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>609089</contig_pos>
        <strand>+</strand>
        <context>TTTTGGTKTG[A/G]AAACATGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAGAATCCTTTGGCTCTAGACCACTGTGTTATTTCTTTTTTTGGTGTG</left_flank>
        <right_flank>AAACATGATTATTCCCAAGTTCCGCCCATTTAGATCGAGACTATAAAAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAACATTTTATCAGTTGGCACGTTCTTGATATCTTGCGTAGAAGCTAGGAAAAATTAGCTCGATCTTGACAGTGTGGGACCCTTCTATTATAGGTTTTACGGTAATAAGTTTGGAAAAAATTGATTGATCTAGTAAAATGCGGAAATTCAATAATGAAGTTTTTTGACTCGTCCACTAGCATGAAAAAATATAGTTTTATCACAAAAAGGGTTTTTTATTCTTAAATTTCCAGAAGAACTACATTTTTTGAAATCTTGAGAATTTGCTGTTTCAGACAAACTCTCTTTTTATTTGAACCGTATTTTCTTCAAACCTATTTTTTGATAATATATTATGAAAGAAATTAACTTCAAATTTATAGCATTTTTGATATTCCAAAAAATCTTCAATCTTCTGTCAATTTTTTTTCTAAAAATGACCCGAGTTTTGCCCAAAACTGTGCAAATAAAAGAATCCTTTGGCTCTAGACCACTGTGTTATTTCTTTTTTTGGTGTGGAAACATGATTATTCCCAAGTTCCGCCCATTTAGATCGAGACTATAAAAGATCGGAGTAAGAGAAGGTGGAGACTCGGCATTGTGCAACATTTGAAAAAGCCGTCTTATTTCATTTGAACAAGTTTTTAAAGATTCAAAACTGTTTCGGCAAGCCTTTCCGAATCCCTCAAAGTTTTCATTTGGTACTCTAAACTACACATGCAGTAAAACCCTGTAAGAAAAGGGCTCCCAACTTTCAACTTTGACCCAATTTATCTCGGTTCTCGTAAAAGATACCAGAAAATGTACAACTGATTAATTGTTTATCGTAATCTCACGACCATTTTATCAGTTTTCAAAATTTTGATATCTGCCATAGGAACCGAGATTATAAGGCTTGAAGTATAGGGTGGGGTTCTATTTGAGCATTTAAAGCGTCTCTTCTTCAAAGCAATATCAAATCACTAATCTCTCATTCCCAATAACCCCTCTGGTTTCCAGTGTTCACATTCTCCCGCTTT</canonical>
            <polymorphic>ACAAACATTTTATCAGTTGGCACGTTCTTGATATCTTGCGTAGAAGCTAGGAAAAATTAGCTCGATCTTGACAGTGTGGGACCCTTCTATTATAGGTTTTACGGTAATAAGTTTGGAAAAAATTGATTGATCTAGTAAAATGCGGAAATTCAATAATGAAGTTTTTTGACTCGTCCACTAGCATGAAAAAATATAGTTTTATCACAAAAAGGGTTTTTTATTCTTAAATTTCCAGAAGAACTACATTTTTTGAAATCTTGAGAATTTGCTGTTTCAGACAAACTCTCTTTTTATTTGAACCGTATTTTCTTCAAACCTATTTTTTGATAATATATTATGAAAGAAATTAACTTCAAATTTATAGCATTTTTGATATTCCAAAAAATCTTCAATCTTCTGTCAATTTTTTTTCTAAAAATGACCCGAGTTTTGCCCAAAACTGTGCAAATAAAAGAATCCTTTGGCTCTAGACCACTGTGTTATTTCTTTTTTTGGTGTGRAAACATGATTATTCCCAAGTTCCGCCCATTTAGATCGAGACTATAAAAGATCGGAGTAAGAGAAGGTGGAGACTCGGCATTGTGCAACATTTGAAAAAGCCGTCTTATTTCATTTGAACAAGTTTTTAAAGATTCAAAACTGTTTCGGCAAGCCTTTCCGAATCCCTCAAAGTTTTCATTTGGTACTCTAAACTACACATGCAGTAAAACCCTGTAAGAAAAGGGCTCCCAACTTTCAACTTTGACCCAATTTATCTCGGTTCTCGTAAAAGATACCAGAAAATGTACAACTGATTAATTGTTTATCGTAATCTCACGACCATTTTATCAGTTTTCAAAATTTTGATATCTGCCATAGGAACCGAGATTATAAGGCTTGAAGTATAGGGTGGGGTTCTATTTGAGCATTTAAAGCGTCTCTTCTTCAAAGCAATATCAAATCACTAATCTCTCATTCCCAATAACCCCTCTGGTTTCCAGTGTTCACATTCTCCCGCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTGTGCAAATAAAAGAATC</pcr_primer_p1>
		<pcr_primer_p2>GAGTACCAAATGAAAACTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAAACTGTGCAAATAAAAGAATCCTTTGGCTCTAGACCACTGTGTTATTTCTTTTTTTGGTGTGGAAACATGATTATTCCCAAGTTCCGCCCATTTAGATCGAGACTATAAAAGATCGGAGTAAGAGAAGGTGGAGACTCGGCATTGTGCAACATTTGAAAAAGCCGTCTTATTTCATTTGAACAAGTTTTTAAAGATTCAAAACTGTTTCGGCAAGCCTTTCCGAATCCCTCAAAGTTTTCATTTGGTACTC</canonical_amplicon>
		<polymorphic_amplicon>AAAACTGTGCAAATAAAAGAATCCTTTGGCTCTAGACCACTGTGTTATTTCTTTTTTTGGTGTGRAAACATGATTATTCCCAAGTTCCGCCCATTTAGATCGAGACTATAAAAGATCGGAGTAAGAGAAGGTGGAGACTCGGCATTGTGCAACATTTGAAAAAGCCGTCTTATTTCATTTGAACAAGTTTTTAAAGATTCAAAACTGTTTCGGCAAGCCTTTCCGAATCCCTCAAAGTTTTCATTTGGTACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6615</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>609193</contig_pos>
        <strand>+</strand>
        <context>AAAAAGCCGT[C/T]TTATTTCATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGTAAGAGAAGGTGGAGACTCGGCATTGTGCAACATTTGAAAAAGCCGT</left_flank>
        <right_flank>TTATTTCATTTGAACAAGTTTTTAAAGATTCAAAACTGTTTCGGCAAGCC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATAAGTTTGGAAAAAATTGATTGATCTAGTAAAATGCGGAAATTCAATAATGAAGTTTTTTGACTCGTCCACTAGCATGAAAAAATATAGTTTTATCACAAAAAGGGTTTTTTATTCTTAAATTTCCAGAAGAACTACATTTTTTGAAATCTTGAGAATTTGCTGTTTCAGACAAACTCTCTTTTTATTTGAACCGTATTTTCTTCAAACCTATTTTTTGATAATATATTATGAAAGAAATTAACTTCAAATTTATAGCATTTTTGATATTCCAAAAAATCTTCAATCTTCTGTCAATTTTTTTTCTAAAAATGACCCGAGTTTTGCCCAAAACTGTGCAAATAAAAGAATCCTTTGGCTCTAGACCACTGTGTTATTTCTTTTTTTGGTGTGGAAACATGATTATTCCCAAGTTCCGCCCATTTAGATCGAGACTATAAAAGATCGGAGTAAGAGAAGGTGGAGACTCGGCATTGTGCAACATTTGAAAAAGCCGTCTTATTTCATTTGAACAAGTTTTTAAAGATTCAAAACTGTTTCGGCAAGCCTTTCCGAATCCCTCAAAGTTTTCATTTGGTACTCTAAACTACACATGCAGTAAAACCCTGTAAGAAAAGGGCTCCCAACTTTCAACTTTGACCCAATTTATCTCGGTTCTCGTAAAAGATACCAGAAAATGTACAACTGATTAATTGTTTATCGTAATCTCACGACCATTTTATCAGTTTTCAAAATTTTGATATCTGCCATAGGAACCGAGATTATAAGGCTTGAAGTATAGGGTGGGGTTCTATTTGAGCATTTAAAGCGTCTCTTCTTCAAAGCAATATCAAATCACTAATCTCTCATTCCCAATAACCCCTCTGGTTTCCAGTGTTCACATTCTCCCGCTTTCCAGAACCTTCTCTTCTGTTCTTCTTCTTATTGTTGTTCTGTTTCTCTATTTCCCTCCAGTTCACAGTCCAGACACCAACGACCATGTTTTTGTTTATTTCTTT</canonical>
            <polymorphic>TAATAAGTTTGGAAAAAATTGATTGATCTAGTAAAATGCGGAAATTCAATAATGAAGTTTTTTGACTCGTCCACTAGCATGAAAAAATATAGTTTTATCACAAAAAGGGTTTTTTATTCTTAAATTTCCAGAAGAACTACATTTTTTGAAATCTTGAGAATTTGCTGTTTCAGACAAACTCTCTTTTTATTTGAACCGTATTTTCTTCAAACCTATTTTTTGATAATATATTATGAAAGAAATTAACTTCAAATTTATAGCATTTTTGATATTCCAAAAAATCTTCAATCTTCTGTCAATTTTTTTTCTAAAAATGACCCGAGTTTTGCCCAAAACTGTGCAAATAAAAGAATCCTTTGGCTCTAGACCACTGTGTTATTTCTTTTTTTGGTGTGGAAACATGATTATTCCCAAGTTCCGCCCATTTAGATCGAGACTATAAAAGATCGGAGTAAGAGAAGGTGGAGACTCGGCATTGTGCAACATTTGAAAAAGCCGTYTTATTTCATTTGAACAAGTTTTTAAAGATTCAAAACTGTTTCGGCAAGCCTTTCCGAATCCCTCAAAGTTTTCATTTGGTACTCTAAACTACACATGCAGTAAAACCCTGTAAGAAAAGGGCTCCCAACTTTCAACTTTGACCCAATTTATCTCGGTTCTCGTAAAAGATACCAGAAAATGTACAACTGATTAATTGTTTATCGTAATCTCACGACCATTTTATCAGTTTTCAAAATTTTGATATCTGCCATAGGAACCGAGATTATAAGGCTTGAAGTATAGGGTGGGGTTCTATTTGAGCATTTAAAGCGTCTCTTCTTCAAAGCAATATCAAATCACTAATCTCTCATTCCCAATAACCCCTCTGGTTTCCAGTGTTCACATTCTCCCGCTTTCCAGAACCTTCTCTTCTGTTCTTCTTCTTATTGTTGTTCTGTTTCTCTATTTCCCTCCAGTTCACAGTCCAGACACCAACGACCATGTTTTTGTTTATTTCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTGTGCAAATAAAAGAATC</pcr_primer_p1>
		<pcr_primer_p2>GAGTACCAAATGAAAACTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAAACTGTGCAAATAAAAGAATCCTTTGGCTCTAGACCACTGTGTTATTTCTTTTTTTGGTGTGGAAACATGATTATTCCCAAGTTCCGCCCATTTAGATCGAGACTATAAAAGATCGGAGTAAGAGAAGGTGGAGACTCGGCATTGTGCAACATTTGAAAAAGCCGTCTTATTTCATTTGAACAAGTTTTTAAAGATTCAAAACTGTTTCGGCAAGCCTTTCCGAATCCCTCAAAGTTTTCATTTGGTACTC</canonical_amplicon>
		<polymorphic_amplicon>AAAACTGTGCAAATAAAAGAATCCTTTGGCTCTAGACCACTGTGTTATTTCTTTTTTTGGTGTGGAAACATGATTATTCCCAAGTTCCGCCCATTTAGATCGAGACTATAAAAGATCGGAGTAAGAGAAGGTGGAGACTCGGCATTGTGCAACATTTGAAAAAGCCGTYTTATTTCATTTGAACAAGTTTTTAAAGATTCAAAACTGTTTCGGCAAGCCTTTCCGAATCCCTCAAAGTTTTCATTTGGTACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6616</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>611167</contig_pos>
        <strand>+</strand>
        <context>AGGTGAGGAC[A/T]AAAAATTGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGAAGGAGGATTCCGAAGATAAATCAGATGACAAGGAAAAGGTGAGGAC</left_flank>
        <right_flank>AAAAATTGCTTTAGAGTTCCAAGTTTGATTTTTCAGAAATCCAATGAAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATGGCTGGGAACACATCCCTTAAAACTGGACAAGCGTTAATGGAAGACGACACGTCTTCTGAAGCACCAGAAGCTTCTGAACCTTTCGAAGTCGAGAAAATGGGACAGATGCCGTTTGAAAGACCTGGCGTGGATGATAGTATAGCTTATGATGAGGCAGCAAGAGATAAGGCGCATTCAGAAGCAGCGGAGAAGGAGTTGGAGGAGCAGAAGAAGGTGAGCTGACTGATAGGAATCTATTTCCCAATCTAGAAGGTCATTATTTTTAAGGAAAAGGAAAAATCTTCTGATGACAAGGGAACCAACAAGGATCATGCTGAAGTCTCAGGAGAGAATTCTGAAAAGGAGGCATCTGAAGACTCTACGGACGACGCGAAGAATCGGGCTCCACAGAGTGAGAAGAGCCAGAAGGGGTTGAACCAGGAACAGATGAGTTCTGGAGGTGAGGAGAAGGAGGATTCCGAAGATAAATCAGATGACAAGGAAAAGGTGAGGACAAAAAATTGCTTTAGAGTTCCAAGTTTGATTTTTCAGAAATCCAATGAAGAGTCTTCTGATAAAAAATCTGGAGACAAGGAAGAAGAATCTTCTGATCCTGCCAAGGACAAAGCCGCACAAGATGCCAATGCTGCCAAGGATACAGCGAAAAATCAATTCCAAAGTACGAAAGAAGACAAATCGTCCGGTTAGTTTTGAAACTTATTTTCTAAGTGTTCCGCTTTTTAAAATTTTTAGAAGAATCCAAAGATCAGAGACCAGGCGATCATAGTCAAGAAGGCAAAACAGAAAAGCCCTCAAAAGAGGATTCTGAAAAAAACAAGGAATCTGAAAAGTCTCAGGATCAGGACAAGGAAGAAAAATCGGAAGATAAAAGGGCCGGTGACCACATCCAGGAGAACAAGGCAGGATCTCCAGATGAGCCTAAAAAAGAGGAACCTGGAGACAAGAATGAGGGCTCAGAATCCAAGTCCGATGACAAAAATGAGAGTCAGTTTTGG</canonical>
            <polymorphic>CTATGGCTGGGAACACATCCCTTAAAACTGGACAAGCGTTAATGGAAGACGACACGTCTTCTGAAGCACCAGAAGCTTCTGAACCTTTCGAAGTCGAGAAAATGGGACAGATGCCGTTTGAAAGACCTGGCGTGGATGATAGTATAGCTTATGATGAGGCAGCAAGAGATAAGGCGCATTCAGAAGCAGCGGAGAAGGAGTTGGAGGAGCAGAAGAAGGTGAGCTGACTGATAGGAATCTATTTCCCAATCTAGAAGGTCATTATTTTTAAGGAAAAGGAAAAATCTTCTGATGACAAGGGAACCAACAAGGATCATGCTGAAGTCTCAGGAGAGAATTCTGAAAAGGAGGCATCTGAAGACTCTACGGACGACGCGAAGAATCGGGCTCCACAGAGTGAGAAGAGCCAGAAGGGGTTGAACCAGGAACAGATGAGTTCTGGAGGTGAGGAGAAGGAGGATTCCGAAGATAAATCAGATGACAAGGAAAAGGTGAGGACWAAAAATTGCTTTAGAGTTCCAAGTTTGATTTTTCAGAAATCCAATGAAGAGTCTTCTGATAAAAAATCTGGAGACAAGGAAGAAGAATCTTCTGATCCTGCCAAGGACAAAGCCGCACAAGATGCCAATGCTGCCAAGGATACAGCGAAAAATCAATTCCAAAGTACGAAAGAAGACAAATCGTCCGGTTAGTTTTGAAACTTATTTTCTAAGTGTTCCGCTTTTTAAAATTTTTAGAAGAATCCAAAGATCAGAGACCAGGCGATCATAGTCAAGAAGGCAAAACAGAAAAGCCCTCAAAAGAGGATTCTGAAAAAAACAAGGAATCTGAAAAGTCTCAGGATCAGGACAAGGAAGAAAAATCGGAAGATAAAAGGGCCGGTGACCACATCCAGGAGAACAAGGCAGGATCTCCAGATGAGCCTAAAAAAGAGGAACCTGGAGACAAGAATGAGGGCTCAGAATCCAAGTCCGATGACAAAAATGAGAGTCAGTTTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACAGATGAGTTCTGGAGGT</pcr_primer_p1>
		<pcr_primer_p2>CTTCTTTCGTACTTTGGAATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAACAGATGAGTTCTGGAGGTGAGGAGAAGGAGGATTCCGAAGATAAATCAGATGACAAGGAAAAGGTGAGGACAAAAAATTGCTTTAGAGTTCCAAGTTTGATTTTTCAGAAATCCAATGAAGAGTCTTCTGATAAAAAATCTGGAGACAAGGAAGAAGAATCTTCTGATCCTGCCAAGGACAAAGCCGCACAAGATGCCAATGCTGCCAAGGATACAGCGAAAAATCAATTCCAAAGTACGAAAGAAG</canonical_amplicon>
		<polymorphic_amplicon>GAACAGATGAGTTCTGGAGGTGAGGAGAAGGAGGATTCCGAAGATAAATCAGATGACAAGGAAAAGGTGAGGACWAAAAATTGCTTTAGAGTTCCAAGTTTGATTTTTCAGAAATCCAATGAAGAGTCTTCTGATAAAAAATCTGGAGACAAGGAAGAAGAATCTTCTGATCCTGCCAAGGACAAAGCCGCACAAGATGCCAATGCTGCCAAGGATACAGCGAAAAATCAATTCCAAAGTACGAAAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6617</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>649063</contig_pos>
        <strand>+</strand>
        <context>CCGTCGAAGC[C/T]AAGGACGCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTCACAGCAAATCAACATGGAGAAAGTTAAGAAAAACGCCGTCGAAGC</left_flank>
        <right_flank>AAGGACGCAGTAGCCGGAGCGGTGAGCCGATTTCAAAACAAACCTCATTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCAAGGACAAGGATTGCTCGCTCGGCTTTTCCTCGTGTACGATTCTCGGACAAATTGCCCCAGTTTTTGAAATTGTAAACAACATCATTTTCGTCGAATTTTTCGAAATTCCGCATCGATTTTTCGGTTCCGTGCCCCCAAAACTACCCAAACATCGTAGTTTCCCGAGCTTTTTCTATCAAAATTCAAATTTTTATGATTCCCGCCAATTCGAAATTCGGCTTTTGCGCTCTGTTGCCAACTTTGTTTACAACTTTTTCCAGCTTTTTGTTTACAAATTGACCTATTTTAAGAAAAATGTAAACAAATTTGTTTACACAATGGATTTTCGAAATCTCATTCATTCACTTTGATTTCATCTGAGATTGTGACCAACGAACAAATCTCATCTTCAATTGCGGTGAGTAAAATTCAGTGTATTTATGACATAAATTTCTCAATTTTCCAGAATTCACAGCAAATCAACATGGAGAAAGTTAAGAAAAACGCCGTCGAAGCCAAGGACGCAGTAGCCGGAGCGGTGAGCCGATTTCAAAACAAACCTCATTTTCATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAAGAACGTTGTAGTGAGGCTAAGGAC</canonical>
            <polymorphic>GTCAAGGACAAGGATTGCTCGCTCGGCTTTTCCTCGTGTACGATTCTCGGACAAATTGCCCCAGTTTTTGAAATTGTAAACAACATCATTTTCGTCGAATTTTTCGAAATTCCGCATCGATTTTTCGGTTCCGTGCCCCCAAAACTACCCAAACATCGTAGTTTCCCGAGCTTTTTCTATCAAAATTCAAATTTTTATGATTCCCGCCAATTCGAAATTCGGCTTTTGCGCTCTGTTGCCAACTTTGTTTACAACTTTTTCCAGCTTTTTGTTTACAAATTGACCTATTTTAAGAAAAATGTAAACAAATTTGTTTACACAATGGATTTTCGAAATCTCATTCATTCACTTTGATTTCATCTGAGATTGTGACCAACGAACAAATCTCATCTTCAATTGCGGTGAGTAAAATTCAGTGTATTTATGACATAAATTTCTCAATTTTCCAGAATTCACAGCAAATCAACATGGAGAAAGTTAAGAAAAACGCCGTCGAAGCYAAGGACGCAGTAGCCGGAGCGGTGAGCCGATTTCAAAACAAACCTCATTTTCATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAAGAACGTTGTAGTGAGGCTAAGGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>499 202 148 90 61</canonical_bands>
                <polymorphic_bands>701 148 90 61</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>499 202 148 90 61</canonical_bands>
                <polymorphic_bands>701 148 90 61</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>234 144 68 66 62 52 49 47 42 42 30 26 24 24 21 15 13 12 12 9 8</canonical_bands>
                <polymorphic_bands>249 144 68 66 62 52 49 47 42 42 30 26 24 24 21 13 12 12 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTTGTTTACACAATGGATTT</pcr_primer_p1>
		<pcr_primer_p2>GTATGAAAATGAGGTTTGTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTTGTTTACACAATGGATTTTCGAAATCTCATTCATTCACTTTGATTTCATCTGAGATTGTGACCAACGAACAAATCTCATCTTCAATTGCGGTGAGTAAAATTCAGTGTATTTATGACATAAATTTCTCAATTTTCCAGAATTCACAGCAAATCAACATGGAGAAAGTTAAGAAAAACGCCGTCGAAGCCAAGGACGCAGTAGCCGGAGCGGTGAGCCGATTTCAAAACAAACCTCATTTTCATAC</canonical_amplicon>
		<polymorphic_amplicon>AAATTTGTTTACACAATGGATTTTCGAAATCTCATTCATTCACTTTGATTTCATCTGAGATTGTGACCAACGAACAAATCTCATCTTCAATTGCGGTGAGTAAAATTCAGTGTATTTATGACATAAATTTCTCAATTTTCCAGAATTCACAGCAAATCAACATGGAGAAAGTTAAGAAAAACGCCGTCGAAGCYAAGGACGCAGTAGCCGGAGCGGTGAGCCGATTTCAAAACAAACCTCATTTTCATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6618</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>649193</contig_pos>
        <strand>+</strand>
        <context>AAACCGCTTC[G/T]GATGCGGCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTC</left_flank>
        <right_flank>GATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACACAAC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGTGCCCCCAAAACTACCCAAACATCGTAGTTTCCCGAGCTTTTTCTATCAAAATTCAAATTTTTATGATTCCCGCCAATTCGAAATTCGGCTTTTGCGCTCTGTTGCCAACTTTGTTTACAACTTTTTCCAGCTTTTTGTTTACAAATTGACCTATTTTAAGAAAAATGTAAACAAATTTGTTTACACAATGGATTTTCGAAATCTCATTCATTCACTTTGATTTCATCTGAGATTGTGACCAACGAACAAATCTCATCTTCAATTGCGGTGAGTAAAATTCAGTGTATTTATGACATAAATTTCTCAATTTTCCAGAATTCACAGCAAATCAACATGGAGAAAGTTAAGAAAAACGCCGTCGAAGCCAAGGACGCAGTAGCCGGAGCGGTGAGCCGATTTCAAAACAAACCTCATTTTCATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAAGAACGTTGTAGTGAGGCTAAGGACAGAGCTCTCGGCCAACCTCACGGTCCTCTCGAGACTGTCAAGGACAAGATCGGAAGTGCTTGGGAGGCCACCAAGGAAAAGGCTCAGGATGTTGTCGATTCCTTCAAGGGACACGCTACTGACTCCAAGG</canonical>
            <polymorphic>CCGTGCCCCCAAAACTACCCAAACATCGTAGTTTCCCGAGCTTTTTCTATCAAAATTCAAATTTTTATGATTCCCGCCAATTCGAAATTCGGCTTTTGCGCTCTGTTGCCAACTTTGTTTACAACTTTTTCCAGCTTTTTGTTTACAAATTGACCTATTTTAAGAAAAATGTAAACAAATTTGTTTACACAATGGATTTTCGAAATCTCATTCATTCACTTTGATTTCATCTGAGATTGTGACCAACGAACAAATCTCATCTTCAATTGCGGTGAGTAAAATTCAGTGTATTTATGACATAAATTTCTCAATTTTCCAGAATTCACAGCAAATCAACATGGAGAAAGTTAAGAAAAACGCCGTCGAAGCCAAGGACGCAGTAGCCGGAGCGGTGAGCCGATTTCAAAACAAACCTCATTTTCATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCKGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAAGAACGTTGTAGTGAGGCTAAGGACAGAGCTCTCGGCCAACCTCACGGTCCTCTCGAGACTGTCAAGGACAAGATCGGAAGTGCTTGGGAGGCCACCAAGGAAAAGGCTCAGGATGTTGTCGATTCCTTCAAGGGACACGCTACTGACTCCAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACCGTTTACTTTTCAGTTCAG</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTGCAAGAGTTGTAGATGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>ATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCKGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6619</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>649212</contig_pos>
        <strand>+</strand>
        <context>TCATGCAGCT[A/G]GTGACAAAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCT</left_flank>
        <right_flank>GTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAACATCGTAGTTTCCCGAGCTTTTTCTATCAAAATTCAAATTTTTATGATTCCCGCCAATTCGAAATTCGGCTTTTGCGCTCTGTTGCCAACTTTGTTTACAACTTTTTCCAGCTTTTTGTTTACAAATTGACCTATTTTAAGAAAAATGTAAACAAATTTGTTTACACAATGGATTTTCGAAATCTCATTCATTCACTTTGATTTCATCTGAGATTGTGACCAACGAACAAATCTCATCTTCAATTGCGGTGAGTAAAATTCAGTGTATTTATGACATAAATTTCTCAATTTTCCAGAATTCACAGCAAATCAACATGGAGAAAGTTAAGAAAAACGCCGTCGAAGCCAAGGACGCAGTAGCCGGAGCGGTGAGCCGATTTCAAAACAAACCTCATTTTCATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAAGAACGTTGTAGTGAGGCTAAGGACAGAGCTCTCGGCCAACCTCACGGTCCTCTCGAGACTGTCAAGGACAAGATCGGAAGTGCTTGGGAGGCCACCAAGGAAAAGGCTCAGGATGTTGTCGATTCCTTCAAGGGACACGCTACTGACTCCAAGGACAGTGCTCAAAACAAGGC</canonical>
            <polymorphic>CAAACATCGTAGTTTCCCGAGCTTTTTCTATCAAAATTCAAATTTTTATGATTCCCGCCAATTCGAAATTCGGCTTTTGCGCTCTGTTGCCAACTTTGTTTACAACTTTTTCCAGCTTTTTGTTTACAAATTGACCTATTTTAAGAAAAATGTAAACAAATTTGTTTACACAATGGATTTTCGAAATCTCATTCATTCACTTTGATTTCATCTGAGATTGTGACCAACGAACAAATCTCATCTTCAATTGCGGTGAGTAAAATTCAGTGTATTTATGACATAAATTTCTCAATTTTCCAGAATTCACAGCAAATCAACATGGAGAAAGTTAAGAAAAACGCCGTCGAAGCCAAGGACGCAGTAGCCGGAGCGGTGAGCCGATTTCAAAACAAACCTCATTTTCATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCTRGTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAAGAACGTTGTAGTGAGGCTAAGGACAGAGCTCTCGGCCAACCTCACGGTCCTCTCGAGACTGTCAAGGACAAGATCGGAAGTGCTTGGGAGGCCACCAAGGAAAAGGCTCAGGATGTTGTCGATTCCTTCAAGGGACACGCTACTGACTCCAAGGACAGTGCTCAAAACAAGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>498 288 214</canonical_bands>
                <polymorphic_bands>712 288</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACCGTTTACTTTTCAGTTCAG</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTGCAAGAGTTGTAGATGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>ATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCTRGTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6620</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>649239</contig_pos>
        <strand>+</strand>
        <context>CGCATGGGAC[A/G]CAACGAAGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTCTGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGAC</left_flank>
        <right_flank>CAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTAGAGAAG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATCAAAATTCAAATTTTTATGATTCCCGCCAATTCGAAATTCGGCTTTTGCGCTCTGTTGCCAACTTTGTTTACAACTTTTTCCAGCTTTTTGTTTACAAATTGACCTATTTTAAGAAAAATGTAAACAAATTTGTTTACACAATGGATTTTCGAAATCTCATTCATTCACTTTGATTTCATCTGAGATTGTGACCAACGAACAAATCTCATCTTCAATTGCGGTGAGTAAAATTCAGTGTATTTATGACATAAATTTCTCAATTTTCCAGAATTCACAGCAAATCAACATGGAGAAAGTTAAGAAAAACGCCGTCGAAGCCAAGGACGCAGTAGCCGGAGCGGTGAGCCGATTTCAAAACAAACCTCATTTTCATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAAGAACGTTGTAGTGAGGCTAAGGACAGAGCTCTCGGCCAACCTCACGGTCCTCTCGAGACTGTCAAGGACAAGATCGGAAGTGCTTGGGAGGCCACCAAGGAAAAGGCTCAGGATGTTGTCGATTCCTTCAAGGGACACGCTACTGACTCCAAGGACAGTGCTCAAAACAAGGCTGCCGATGCTTACAACTCGGGTAAGGA</canonical>
            <polymorphic>CTATCAAAATTCAAATTTTTATGATTCCCGCCAATTCGAAATTCGGCTTTTGCGCTCTGTTGCCAACTTTGTTTACAACTTTTTCCAGCTTTTTGTTTACAAATTGACCTATTTTAAGAAAAATGTAAACAAATTTGTTTACACAATGGATTTTCGAAATCTCATTCATTCACTTTGATTTCATCTGAGATTGTGACCAACGAACAAATCTCATCTTCAATTGCGGTGAGTAAAATTCAGTGTATTTATGACATAAATTTCTCAATTTTCCAGAATTCACAGCAAATCAACATGGAGAAAGTTAAGAAAAACGCCGTCGAAGCCAAGGACGCAGTAGCCGGAGCGGTGAGCCGATTTCAAAACAAACCTCATTTTCATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACRCAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAAGAACGTTGTAGTGAGGCTAAGGACAGAGCTCTCGGCCAACCTCACGGTCCTCTCGAGACTGTCAAGGACAAGATCGGAAGTGCTTGGGAGGCCACCAAGGAAAAGGCTCAGGATGTTGTCGATTCCTTCAAGGGACACGCTACTGACTCCAAGGACAGTGCTCAAAACAAGGCTGCCGATGCTTACAACTCGGGTAAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>158 143 85 70 69 54 43 40 39 38 37 35 33 31 29 24 23 23 14 12</canonical_bands>
                <polymorphic_bands>182 143 85 70 69 54 43 40 39 38 37 35 33 31 29 23 23 14 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACCGTTTACTTTTCAGTTCAG</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTGCAAGAGTTGTAGATGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>ATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACRCAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6621</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>649266</contig_pos>
        <strand>+</strand>
        <context>TGCTGACGCC[A/G]AGGACAACGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCC</left_flank>
        <right_flank>AGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGCCAATTCGAAATTCGGCTTTTGCGCTCTGTTGCCAACTTTGTTTACAACTTTTTCCAGCTTTTTGTTTACAAATTGACCTATTTTAAGAAAAATGTAAACAAATTTGTTTACACAATGGATTTTCGAAATCTCATTCATTCACTTTGATTTCATCTGAGATTGTGACCAACGAACAAATCTCATCTTCAATTGCGGTGAGTAAAATTCAGTGTATTTATGACATAAATTTCTCAATTTTCCAGAATTCACAGCAAATCAACATGGAGAAAGTTAAGAAAAACGCCGTCGAAGCCAAGGACGCAGTAGCCGGAGCGGTGAGCCGATTTCAAAACAAACCTCATTTTCATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAAGAACGTTGTAGTGAGGCTAAGGACAGAGCTCTCGGCCAACCTCACGGTCCTCTCGAGACTGTCAAGGACAAGATCGGAAGTGCTTGGGAGGCCACCAAGGAAAAGGCTCAGGATGTTGTCGATTCCTTCAAGGGACACGCTACTGACTCCAAGGACAGTGCTCAAAACAAGGCTGCCGATGCTTACAACTCGGGTAAGGACGCTGCTAGAGACGCTTGGGATGCAAC</canonical>
            <polymorphic>CCGCCAATTCGAAATTCGGCTTTTGCGCTCTGTTGCCAACTTTGTTTACAACTTTTTCCAGCTTTTTGTTTACAAATTGACCTATTTTAAGAAAAATGTAAACAAATTTGTTTACACAATGGATTTTCGAAATCTCATTCATTCACTTTGATTTCATCTGAGATTGTGACCAACGAACAAATCTCATCTTCAATTGCGGTGAGTAAAATTCAGTGTATTTATGACATAAATTTCTCAATTTTCCAGAATTCACAGCAAATCAACATGGAGAAAGTTAAGAAAAACGCCGTCGAAGCCAAGGACGCAGTAGCCGGAGCGGTGAGCCGATTTCAAAACAAACCTCATTTTCATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCCRAGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAAGAACGTTGTAGTGAGGCTAAGGACAGAGCTCTCGGCCAACCTCACGGTCCTCTCGAGACTGTCAAGGACAAGATCGGAAGTGCTTGGGAGGCCACCAAGGAAAAGGCTCAGGATGTTGTCGATTCCTTCAAGGGACACGCTACTGACTCCAAGGACAGTGCTCAAAACAAGGCTGCCGATGCTTACAACTCGGGTAAGGACGCTGCTAGAGACGCTTGGGATGCAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>296 202 148 132 90 78 54</canonical_bands>
                <polymorphic_bands>350 296 132 90 78 54</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACCGTTTACTTTTCAGTTCAG</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTGCAAGAGTTGTAGATGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>ATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCCRAGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6622</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>649283</contig_pos>
        <strand>+</strand>
        <context>ACGTCGAGGT[A/T]GAGAAGCTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGGGACACAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGT</left_flank>
        <right_flank>GAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTTTTGCGCTCTGTTGCCAACTTTGTTTACAACTTTTTCCAGCTTTTTGTTTACAAATTGACCTATTTTAAGAAAAATGTAAACAAATTTGTTTACACAATGGATTTTCGAAATCTCATTCATTCACTTTGATTTCATCTGAGATTGTGACCAACGAACAAATCTCATCTTCAATTGCGGTGAGTAAAATTCAGTGTATTTATGACATAAATTTCTCAATTTTCCAGAATTCACAGCAAATCAACATGGAGAAAGTTAAGAAAAACGCCGTCGAAGCCAAGGACGCAGTAGCCGGAGCGGTGAGCCGATTTCAAAACAAACCTCATTTTCATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAAGAACGTTGTAGTGAGGCTAAGGACAGAGCTCTCGGCCAACCTCACGGTCCTCTCGAGACTGTCAAGGACAAGATCGGAAGTGCTTGGGAGGCCACCAAGGAAAAGGCTCAGGATGTTGTCGATTCCTTCAAGGGACACGCTACTGACTCCAAGGACAGTGCTCAAAACAAGGCTGCCGATGCTTACAACTCGGGTAAGGACGCTGCTAGAGACGCTTGGGATGCAACCAAGAACAAGGCCGAGG</canonical>
            <polymorphic>GGCTTTTGCGCTCTGTTGCCAACTTTGTTTACAACTTTTTCCAGCTTTTTGTTTACAAATTGACCTATTTTAAGAAAAATGTAAACAAATTTGTTTACACAATGGATTTTCGAAATCTCATTCATTCACTTTGATTTCATCTGAGATTGTGACCAACGAACAAATCTCATCTTCAATTGCGGTGAGTAAAATTCAGTGTATTTATGACATAAATTTCTCAATTTTCCAGAATTCACAGCAAATCAACATGGAGAAAGTTAAGAAAAACGCCGTCGAAGCCAAGGACGCAGTAGCCGGAGCGGTGAGCCGATTTCAAAACAAACCTCATTTTCATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTWGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAAGAACGTTGTAGTGAGGCTAAGGACAGAGCTCTCGGCCAACCTCACGGTCCTCTCGAGACTGTCAAGGACAAGATCGGAAGTGCTTGGGAGGCCACCAAGGAAAAGGCTCAGGATGTTGTCGATTCCTTCAAGGGACACGCTACTGACTCCAAGGACAGTGCTCAAAACAAGGCTGCCGATGCTTACAACTCGGGTAAGGACGCTGCTAGAGACGCTTGGGATGCAACCAAGAACAAGGCCGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACCGTTTACTTTTCAGTTCAG</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTGCAAGAGTTGTAGATGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>ATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTWGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6623</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>649458</contig_pos>
        <strand>+</strand>
        <context>CCAATTCGCT[G/T]AARGAGAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCT</left_flank>
        <right_flank>AAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGCGGTGAGTAAAATTCAGTGTATTTATGACATAAATTTCTCAATTTTCCAGAATTCACAGCAAATCAACATGGAGAAAGTTAAGAAAAACGCCGTCGAAGCCAAGGACGCAGTAGCCGGAGCGGTGAGCCGATTTCAAAACAAACCTCATTTTCATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAAGAACGTTGTAGTGAGGCTAAGGACAGAGCTCTCGGCCAACCTCACGGTCCTCTCGAGACTGTCAAGGACAAGATCGGAAGTGCTTGGGAGGCCACCAAGGAAAAGGCTCAGGATGTTGTCGATTCCTTCAAGGGACACGCTACTGACTCCAAGGACAGTGCTCAAAACAAGGCTGCCGATGCTTACAACTCGGGTAAGGACGCTGCTAGAGACGCTTGGGATGCAACCAAGAACAAGGCCGAGGAGCTTAAGGACAACGCTCAAGACAAAGCAGACGACTACAAGGAGCGCTGCAGTGAGGCCAAGGACAGAGCTCTCGGTCAACCTCACGGACCATTCGAGACTGTCAAGGACAAGATCATCGAAGTCAAAGACAGAGCCACTGGCCAGCCTCACGGACCTCTCGAAACCGCCAAGGA</canonical>
            <polymorphic>ATTGCGGTGAGTAAAATTCAGTGTATTTATGACATAAATTTCTCAATTTTCCAGAATTCACAGCAAATCAACATGGAGAAAGTTAAGAAAAACGCCGTCGAAGCCAAGGACGCAGTAGCCGGAGCGGTGAGCCGATTTCAAAACAAACCTCATTTTCATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTKAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAAGAACGTTGTAGTGAGGCTAAGGACAGAGCTCTCGGCCAACCTCACGGTCCTCTCGAGACTGTCAAGGACAAGATCGGAAGTGCTTGGGAGGCCACCAAGGAAAAGGCTCAGGATGTTGTCGATTCCTTCAAGGGACACGCTACTGACTCCAAGGACAGTGCTCAAAACAAGGCTGCCGATGCTTACAACTCGGGTAAGGACGCTGCTAGAGACGCTTGGGATGCAACCAAGAACAAGGCCGAGGAGCTTAAGGACAACGCTCAAGACAAAGCAGACGACTACAAGGAGCGCTGCAGTGAGGCCAAGGACAGAGCTCTCGGTCAACCTCACGGACCATTCGAGACTGTCAAGGACAAGATCATCGAAGTCAAAGACAGAGCCACTGGCCAGCCTCACGGACCTCTCGAAACCGCCAAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>416 330 171 83</canonical_bands>
                <polymorphic_bands>746 171 83</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCCAGAAGGAGTATTTTTCTAA</pcr_primer_p1>
		<pcr_primer_p2>TTTGTAGTCGTCAGCCTTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAA</canonical_amplicon>
		<polymorphic_amplicon>CTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTKAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6624</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>649461</contig_pos>
        <strand>+</strand>
        <context>ATTCGCTKAA[A/G]GAGAAGACCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAA</left_flank>
        <right_flank>GAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGGTGAGTAAAATTCAGTGTATTTATGACATAAATTTCTCAATTTTCCAGAATTCACAGCAAATCAACATGGAGAAAGTTAAGAAAAACGCCGTCGAAGCCAAGGACGCAGTAGCCGGAGCGGTGAGCCGATTTCAAAACAAACCTCATTTTCATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAAGAACGTTGTAGTGAGGCTAAGGACAGAGCTCTCGGCCAACCTCACGGTCCTCTCGAGACTGTCAAGGACAAGATCGGAAGTGCTTGGGAGGCCACCAAGGAAAAGGCTCAGGATGTTGTCGATTCCTTCAAGGGACACGCTACTGACTCCAAGGACAGTGCTCAAAACAAGGCTGCCGATGCTTACAACTCGGGTAAGGACGCTGCTAGAGACGCTTGGGATGCAACCAAGAACAAGGCCGAGGAGCTTAAGGACAACGCTCAAGACAAAGCAGACGACTACAAGGAGCGCTGCAGTGAGGCCAAGGACAGAGCTCTCGGTCAACCTCACGGACCATTCGAGACTGTCAAGGACAAGATCATCGAAGTCAAAGACAGAGCCACTGGCCAGCCTCACGGACCTCTCGAAACCGCCAAGGACAA</canonical>
            <polymorphic>GCGGTGAGTAAAATTCAGTGTATTTATGACATAAATTTCTCAATTTTCCAGAATTCACAGCAAATCAACATGGAGAAAGTTAAGAAAAACGCCGTCGAAGCCAAGGACGCAGTAGCCGGAGCGGTGAGCCGATTTCAAAACAAACCTCATTTTCATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAARGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAAGAACGTTGTAGTGAGGCTAAGGACAGAGCTCTCGGCCAACCTCACGGTCCTCTCGAGACTGTCAAGGACAAGATCGGAAGTGCTTGGGAGGCCACCAAGGAAAAGGCTCAGGATGTTGTCGATTCCTTCAAGGGACACGCTACTGACTCCAAGGACAGTGCTCAAAACAAGGCTGCCGATGCTTACAACTCGGGTAAGGACGCTGCTAGAGACGCTTGGGATGCAACCAAGAACAAGGCCGAGGAGCTTAAGGACAACGCTCAAGACAAAGCAGACGACTACAAGGAGCGCTGCAGTGAGGCCAAGGACAGAGCTCTCGGTCAACCTCACGGACCATTCGAGACTGTCAAGGACAAGATCATCGAAGTCAAAGACAGAGCCACTGGCCAGCCTCACGGACCTCTCGAAACCGCCAAGGACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCCAGAAGGAGTATTTTTCTAA</pcr_primer_p1>
		<pcr_primer_p2>TTTGTAGTCGTCAGCCTTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAA</canonical_amplicon>
		<polymorphic_amplicon>CTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAARGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6625</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>649499</contig_pos>
        <strand>+</strand>
        <context>GCTTGGGAGG[C/T]TGCCAAGGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATTCGCTTAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGG</left_flank>
        <right_flank>TGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAAGAACGTTGTA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAATTTTCCAGAATTCACAGCAAATCAACATGGAGAAAGTTAAGAAAAACGCCGTCGAAGCCAAGGACGCAGTAGCCGGAGCGGTGAGCCGATTTCAAAACAAACCTCATTTTCATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAAGAACGTTGTAGTGAGGCTAAGGACAGAGCTCTCGGCCAACCTCACGGTCCTCTCGAGACTGTCAAGGACAAGATCGGAAGTGCTTGGGAGGCCACCAAGGAAAAGGCTCAGGATGTTGTCGATTCCTTCAAGGGACACGCTACTGACTCCAAGGACAGTGCTCAAAACAAGGCTGCCGATGCTTACAACTCGGGTAAGGACGCTGCTAGAGACGCTTGGGATGCAACCAAGAACAAGGCCGAGGAGCTTAAGGACAACGCTCAAGACAAAGCAGACGACTACAAGGAGCGCTGCAGTGAGGCCAAGGACAGAGCTCTCGGTCAACCTCACGGACCATTCGAGACTGTCAAGGACAAGATCATCGAAGTCAAAGACAGAGCCACTGGCCAGCCTCACGGACCTCTCGAAACCGCCAAGGACAAGATCGAAAGTGCTTGGGAAGCAACCAAGGAAAAGGCTC</canonical>
            <polymorphic>CTCAATTTTCCAGAATTCACAGCAAATCAACATGGAGAAAGTTAAGAAAAACGCCGTCGAAGCCAAGGACGCAGTAGCCGGAGCGGTGAGCCGATTTCAAAACAAACCTCATTTTCATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGYTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAAGAACGTTGTAGTGAGGCTAAGGACAGAGCTCTCGGCCAACCTCACGGTCCTCTCGAGACTGTCAAGGACAAGATCGGAAGTGCTTGGGAGGCCACCAAGGAAAAGGCTCAGGATGTTGTCGATTCCTTCAAGGGACACGCTACTGACTCCAAGGACAGTGCTCAAAACAAGGCTGCCGATGCTTACAACTCGGGTAAGGACGCTGCTAGAGACGCTTGGGATGCAACCAAGAACAAGGCCGAGGAGCTTAAGGACAACGCTCAAGACAAAGCAGACGACTACAAGGAGCGCTGCAGTGAGGCCAAGGACAGAGCTCTCGGTCAACCTCACGGACCATTCGAGACTGTCAAGGACAAGATCATCGAAGTCAAAGACAGAGCCACTGGCCAGCCTCACGGACCTCTCGAAACCGCCAAGGACAAGATCGAAAGTGCTTGGGAAGCAACCAAGGAAAAGGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAACAAGGTTGGAAATG</pcr_primer_p1>
		<pcr_primer_p2>CTTGAAGGAATCGACAACAT</pcr_primer_p2>
		<pcr_amplicon_size>313</pcr_amplicon_size>
		<canonical_amplicon>CAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAAGAACGTTGTAGTGAGGCTAAGGACAGAGCTCTCGGCCAACCTCACGGTCCTCTCGAGACTGTCAAGGACAAGATCGGAAGTGCTTGGGAGGCCACCAAGGAAAAGGCTCAGGATGTTGTCGATTCCTTCAAG</canonical_amplicon>
		<polymorphic_amplicon>CAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGYTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAAGAACGTTGTAGTGAGGCTAAGGACAGAGCTCTCGGCCAACCTCACGGTCCTCTCGAGACTGTCAAGGACAAGATCGGAAGTGCTTGGGAGGCCACCAAGGAAAAGGCTCAGGATGTTGTCGATTCCTTCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6626</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>649544</contig_pos>
        <strand>+</strand>
        <context>TACAAAGAAC[G/T]TTGTAGTGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAAGAAC</left_flank>
        <right_flank>TTGTAGTGAGGCTAAGGACAGAGCTCTCGGCCAACCTCACGGTCCTCTCG</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAACGCCGTCGAAGCCAAGGACGCAGTAGCCGGAGCGGTGAGCCGATTTCAAAACAAACCTCATTTTCATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAAGAACGTTGTAGTGAGGCTAAGGACAGAGCTCTCGGCCAACCTCACGGTCCTCTCGAGACTGTCAAGGACAAGATCGGAAGTGCTTGGGAGGCCACCAAGGAAAAGGCTCAGGATGTTGTCGATTCCTTCAAGGGACACGCTACTGACTCCAAGGACAGTGCTCAAAACAAGGCTGCCGATGCTTACAACTCGGGTAAGGACGCTGCTAGAGACGCTTGGGATGCAACCAAGAACAAGGCCGAGGAGCTTAAGGACAACGCTCAAGACAAAGCAGACGACTACAAGGAGCGCTGCAGTGAGGCCAAGGACAGAGCTCTCGGTCAACCTCACGGACCATTCGAGACTGTCAAGGACAAGATCATCGAAGTCAAAGACAGAGCCACTGGCCAGCCTCACGGACCTCTCGAAACCGCCAAGGACAAGATCGAAAGTGCTTGGGAAGCAACCAAGGAAAAGGCTCATGAAGTCGTCGATTCCTTCAAGGGACACTAGGAACCAAGTTCCC</canonical>
            <polymorphic>GAAAAACGCCGTCGAAGCCAAGGACGCAGTAGCCGGAGCGGTGAGCCGATTTCAAAACAAACCTCATTTTCATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAAGAACKTTGTAGTGAGGCTAAGGACAGAGCTCTCGGCCAACCTCACGGTCCTCTCGAGACTGTCAAGGACAAGATCGGAAGTGCTTGGGAGGCCACCAAGGAAAAGGCTCAGGATGTTGTCGATTCCTTCAAGGGACACGCTACTGACTCCAAGGACAGTGCTCAAAACAAGGCTGCCGATGCTTACAACTCGGGTAAGGACGCTGCTAGAGACGCTTGGGATGCAACCAAGAACAAGGCCGAGGAGCTTAAGGACAACGCTCAAGACAAAGCAGACGACTACAAGGAGCGCTGCAGTGAGGCCAAGGACAGAGCTCTCGGTCAACCTCACGGACCATTCGAGACTGTCAAGGACAAGATCATCGAAGTCAAAGACAGAGCCACTGGCCAGCCTCACGGACCTCTCGAAACCGCCAAGGACAAGATCGAAAGTGCTTGGGAAGCAACCAAGGAAAAGGCTCATGAAGTCGTCGATTCCTTCAAGGGACACTAGGAACCAAGTTCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>502 269 229</canonical_bands>
                <polymorphic_bands>771 229</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAACAAGGTTGGAAATG</pcr_primer_p1>
		<pcr_primer_p2>CTTGAAGGAATCGACAACAT</pcr_primer_p2>
		<pcr_amplicon_size>313</pcr_amplicon_size>
		<canonical_amplicon>CAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAAGAACGTTGTAGTGAGGCTAAGGACAGAGCTCTCGGCCAACCTCACGGTCCTCTCGAGACTGTCAAGGACAAGATCGGAAGTGCTTGGGAGGCCACCAAGGAAAAGGCTCAGGATGTTGTCGATTCCTTCAAG</canonical_amplicon>
		<polymorphic_amplicon>CAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAAGAACKTTGTAGTGAGGCTAAGGACAGAGCTCTCGGCCAACCTCACGGTCCTCTCGAGACTGTCAAGGACAAGATCGGAAGTGCTTGGGAGGCCACCAAGGAAAAGGCTCAGGATGTTGTCGATTCCTTCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6627</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>649557</contig_pos>
        <strand>+</strand>
        <context>GTAGTGAGGC[A/T]AAGGACAGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACAAGGCTCAAGACAAGGCTGACGACTACAAAGAACGTTGTAGTGAGGC</left_flank>
        <right_flank>AAGGACAGAGCTCTCGGCCAACCTCACGGTCCTCTCGAGACTGTCAAGGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGCCAAGGACGCAGTAGCCGGAGCGGTGAGCCGATTTCAAAACAAACCTCATTTTCATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAAGAACGTTGTAGTGAGGCTAAGGACAGAGCTCTCGGCCAACCTCACGGTCCTCTCGAGACTGTCAAGGACAAGATCGGAAGTGCTTGGGAGGCCACCAAGGAAAAGGCTCAGGATGTTGTCGATTCCTTCAAGGGACACGCTACTGACTCCAAGGACAGTGCTCAAAACAAGGCTGCCGATGCTTACAACTCGGGTAAGGACGCTGCTAGAGACGCTTGGGATGCAACCAAGAACAAGGCCGAGGAGCTTAAGGACAACGCTCAAGACAAAGCAGACGACTACAAGGAGCGCTGCAGTGAGGCCAAGGACAGAGCTCTCGGTCAACCTCACGGACCATTCGAGACTGTCAAGGACAAGATCATCGAAGTCAAAGACAGAGCCACTGGCCAGCCTCACGGACCTCTCGAAACCGCCAAGGACAAGATCGAAAGTGCTTGGGAAGCAACCAAGGAAAAGGCTCATGAAGTCGTCGATTCCTTCAAGGGACACTAGGAACCAAGTTCCCTTGTAACAAATAT</canonical>
            <polymorphic>GAAGCCAAGGACGCAGTAGCCGGAGCGGTGAGCCGATTTCAAAACAAACCTCATTTTCATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAAGAACGTTGTAGTGAGGCWAAGGACAGAGCTCTCGGCCAACCTCACGGTCCTCTCGAGACTGTCAAGGACAAGATCGGAAGTGCTTGGGAGGCCACCAAGGAAAAGGCTCAGGATGTTGTCGATTCCTTCAAGGGACACGCTACTGACTCCAAGGACAGTGCTCAAAACAAGGCTGCCGATGCTTACAACTCGGGTAAGGACGCTGCTAGAGACGCTTGGGATGCAACCAAGAACAAGGCCGAGGAGCTTAAGGACAACGCTCAAGACAAAGCAGACGACTACAAGGAGCGCTGCAGTGAGGCCAAGGACAGAGCTCTCGGTCAACCTCACGGACCATTCGAGACTGTCAAGGACAAGATCATCGAAGTCAAAGACAGAGCCACTGGCCAGCCTCACGGACCTCTCGAAACCGCCAAGGACAAGATCGAAAGTGCTTGGGAAGCAACCAAGGAAAAGGCTCATGAAGTCGTCGATTCCTTCAAGGGACACTAGGAACCAAGTTCCCTTGTAACAAATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>499 411 90</canonical_bands>
                <polymorphic_bands>589 411</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>68 67 66 66 66 66 62 61 56 55 49 47 42 30 24 24 21 15 15 13 12 12 12 12 9 8 7 7 4 4</canonical_bands>
                <polymorphic_bands>68 67 66 66 66 66 62 61 56 55 49 47 42 42 24 24 21 15 15 13 12 12 12 9 8 7 7 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAACAAGGTTGGAAATG</pcr_primer_p1>
		<pcr_primer_p2>CTTGAAGGAATCGACAACAT</pcr_primer_p2>
		<pcr_amplicon_size>313</pcr_amplicon_size>
		<canonical_amplicon>CAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAAGAACGTTGTAGTGAGGCTAAGGACAGAGCTCTCGGCCAACCTCACGGTCCTCTCGAGACTGTCAAGGACAAGATCGGAAGTGCTTGGGAGGCCACCAAGGAAAAGGCTCAGGATGTTGTCGATTCCTTCAAG</canonical_amplicon>
		<polymorphic_amplicon>CAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAAGAACGTTGTAGTGAGGCWAAGGACAGAGCTCTCGGCCAACCTCACGGTCCTCTCGAGACTGTCAAGGACAAGATCGGAAGTGCTTGGGAGGCCACCAAGGAAAAGGCTCAGGATGTTGTCGATTCCTTCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6628</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>649575</contig_pos>
        <strand>+</strand>
        <context>GAGCTCTCGG[C/G]CAACCTCACG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCTGACGACTACAAAGAACGTTGTAGTGAGGCTAAGGACAGAGCTCTCGG</left_flank>
        <right_flank>CAACCTCACGGTCCTCTCGAGACTGTCAAGGACAAGATCGGAAGTGCTTG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCGGAGCGGTGAGCCGATTTCAAAACAAACCTCATTTTCATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAAGAACGTTGTAGTGAGGCTAAGGACAGAGCTCTCGGCCAACCTCACGGTCCTCTCGAGACTGTCAAGGACAAGATCGGAAGTGCTTGGGAGGCCACCAAGGAAAAGGCTCAGGATGTTGTCGATTCCTTCAAGGGACACGCTACTGACTCCAAGGACAGTGCTCAAAACAAGGCTGCCGATGCTTACAACTCGGGTAAGGACGCTGCTAGAGACGCTTGGGATGCAACCAAGAACAAGGCCGAGGAGCTTAAGGACAACGCTCAAGACAAAGCAGACGACTACAAGGAGCGCTGCAGTGAGGCCAAGGACAGAGCTCTCGGTCAACCTCACGGACCATTCGAGACTGTCAAGGACAAGATCATCGAAGTCAAAGACAGAGCCACTGGCCAGCCTCACGGACCTCTCGAAACCGCCAAGGACAAGATCGAAAGTGCTTGGGAAGCAACCAAGGAAAAGGCTCATGAAGTCGTCGATTCCTTCAAGGGACACTAGGAACCAAGTTCCCTTGTAACAAATATATGTTTACTGTGTAAATA</canonical>
            <polymorphic>GCCGGAGCGGTGAGCCGATTTCAAAACAAACCTCATTTTCATACCGTTTACTTTTCAGTTCAGCCACGCTGGCGAAAAGATTGGCGACGCCTACGACAGCACCAAGAAAACCGCTTCTGATGCGGCTCATGCAGCTAGTGACAAAGCTGGAAACGCATGGGACACAACGAAGGACAAGGTTGCTGACGCCAAGGACAACGTCGAGGTAGAGAAGCTTCCAGAAGGAGTATTTTTCTAAATATGATTTTTTCCAGAACAAAGCCGGCGACATCTACAACTCTTGCAAAAACAAGGTTGGAAATGCATGGGATGCTACCAAGCACAAGGCTCATGATGCCAAGGAGGCAGCTAGCGACGACGCTTCTGACAAAGCCAATTCGCTTAAAGAGAAGACCGGAGACAAGGTGTCTGGAGCTTGGGAGGTTGCCAAGGACAAGGCTCAAGACAAGGCTGACGACTACAAAGAACGTTGTAGTGAGGCTAAGGACAGAGCTCTCGGSCAACCTCACGGTCCTCTCGAGACTGTCAAGGACAAGATCGGAAGTGCTTGGGAGGCCACCAAGGAAAAGGCTCAGGATGTTGTCGATTCCTTCAAGGGACACGCTACTGACTCCAAGGACAGTGCTCAAAACAAGGCTGCCGATGCTTACAACTCGGGTAAGGACGCTGCTAGAGACGCTTGGGATGCAACCAAGAACAAGGCCGAGGAGCTTAAGGACAACGCTCAAGACAAAGCAGACGACTACAAGGAGCGCTGCAGTGAGGCCAAGGACAGAGCTCTCGGTCAACCTCACGGACCATTCGAGACTGTCAAGGACAAGATCATCGAAGTCAAAGACAGAGCCACTGGCCAGCCTCACGGACCTCTCGAAACCGCCAAGGACAAGATCGAAAGTGCTTGGGAAGCAACCAAGGAAAAGGCTCATGAAGTCGTCGATTCCTTCAAGGGACACTAGGAACCAAGTTCCCTTGTAACAAATATATGTTTACTGTGTAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>499 150 147 85 63 56</canonical_bands>
                <polymorphic_bands>555 150 147 85 63</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>497 351 152</canonical_bands>
                <polymorphic_bands>848 152</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>79 68 67 66 66 66 66 62 56 55 49 47 42 30 24 24 21 15 14 12 12 12 12 9 8 7 7 4</canonical_bands>
                <polymorphic_bands>79 68 67 66 66 66 66 63 62 55 49 47 42 30 24 24 21 15 14 12 12 12 12 9 8 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACAAGGCTGACGACTACA</pcr_primer_p1>
		<pcr_primer_p2>CTTGAAGGAATCGACAACAT</pcr_primer_p2>
		<pcr_amplicon_size>154</pcr_amplicon_size>
		<canonical_amplicon>AGACAAGGCTGACGACTACAAAGAACGTTGTAGTGAGGCTAAGGACAGAGCTCTCGGCCAACCTCACGGTCCTCTCGAGACTGTCAAGGACAAGATCGGAAGTGCTTGGGAGGCCACCAAGGAAAAGGCTCAGGATGTTGTCGATTCCTTCAAG</canonical_amplicon>
		<polymorphic_amplicon>AGACAAGGCTGACGACTACAAAGAACGTTGTAGTGAGGCTAAGGACAGAGCTCTCGGSCAACCTCACGGTCCTCTCGAGACTGTCAAGGACAAGATCGGAAGTGCTTGGGAGGCCACCAAGGAAAAGGCTCAGGATGTTGTCGATTCCTTCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6629</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>651676</contig_pos>
        <strand></strand>
        <context>GTGGTGTTAG[A/G]AGGAAGAGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCTACAGTATTCCCTCCCAACTGCAATAAATTCGTTTAGTGGTGTTAG</left_flank>
        <right_flank>AGGAAGAGAGGAGGGCAAGAAGCAATAATTTTTTCTGAATTCTTTTTTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTCGTAAACTAAAATATTTTCGGTGATGTTATTTATCGTTGTGGGACCTTCGGCCTCGGCCGCCGGCGCTTCTCTTCCACAGCTTAGAATTTTTGTACCAAATTAATAGGCTTCAGATGAAAAACCTCATTTTTCTTCCACTGGAACATTTAAACAATAGCTCCAAATTCAAAAATATGACGAATAATTTTCGGGGACTTCAAACTAGAATTTTTCTACGGAATTCTGAACATTTTGAAAATTTTGAATACCAAGCTCTTTGGCCTACTTCCTACTCTCATCTTTCGATTTCTCTTGAACCGCTTCAGAAAATTTTCTGCAGAAGATTGTACAGTTTTTATTTTTAAGATACACAAAAAGAAGGAAAGAAAGAAAGATATTGCACAAATTGAAGGCACTTATTTTTATATAATTCTCCTCTCGAAAAGTTCTTCCTACTTCGTTTTTTTCTACAGTATTCCCTCCCAACTGCAATAAATTCGTTTAGTGGTGTTAGAAGGAAGAGAGGAGGGCAAGAAGCAATAATTTTTTCTGAATTCTTTTTTTTCAGAATCTCGATGTCGTTTCTTTTTTCTTCAACGTCATCTAATATTATATTATTCTTCTTCCTTTTGCTTTCTTTGTTGTTTTTATTTCCTTTTGTTCATTTTTTCCTATTTTTTCGAACTGTTTCTCCAAGAGTTCACTTCTAGCTCAATTATCTCAACTTCTATTAGAGATATCAAAAATTTGTCTACTGATAAAATATTTAACATAATATCAGAAATGTTTTGTCAGTTGACACATTTTCTATTTCTCTTACAGGAGTTGGGATAATTGAGCTCAAAGTGTGCCTACCATATTTGCTCGTATACATAGAATCCCACACTATACGTGCACCTTGAGCTCAATTATCTCGGTTCCCATGATAGATATCAAAAATTTGCTAATTGATAAAATGTTTGTCAAATTATTTCCTTCATTTTATCAGTTGACAAATTTCAGATATTTCTTACAG</canonical>
            <polymorphic>GAATTCGTAAACTAAAATATTTTCGGTGATGTTATTTATCGTTGTGGGACCTTCGGCCTCGGCCGCCGGCGCTTCTCTTCCACAGCTTAGAATTTTTGTACCAAATTAATAGGCTTCAGATGAAAAACCTCATTTTTCTTCCACTGGAACATTTAAACAATAGCTCCAAATTCAAAAATATGACGAATAATTTTCGGGGACTTCAAACTAGAATTTTTCTACGGAATTCTGAACATTTTGAAAATTTTGAATACCAAGCTCTTTGGCCTACTTCCTACTCTCATCTTTCGATTTCTCTTGAACCGCTTCAGAAAATTTTCTGCAGAAGATTGTACAGTTTTTATTTTTAAGATACACAAAAAGAAGGAAAGAAAGAAAGATATTGCACAAATTGAAGGCACTTATTTTTATATAATTCTCCTCTCGAAAAGTTCTTCCTACTTCGTTTTTTTCTACAGTATTCCCTCCCAACTGCAATAAATTCGTTTAGTGGTGTTAGRAGGAAGAGAGGAGGGCAAGAAGCAATAATTTTTTCTGAATTCTTTTTTTTCAGAATCTCGATGTCGTTTCTTTTTTCTTCAACGTCATCTAATATTATATTATTCTTCTTCCTTTTGCTTTCTTTGTTGTTTTTATTTCCTTTTGTTCATTTTTTCCTATTTTTTCGAACTGTTTCTCCAAGAGTTCACTTCTAGCTCAATTATCTCAACTTCTATTAGAGATATCAAAAATTTGTCTACTGATAAAATATTTAACATAATATCAGAAATGTTTTGTCAGTTGACACATTTTCTATTTCTCTTACAGGAGTTGGGATAATTGAGCTCAAAGTGTGCCTACCATATTTGCTCGTATACATAGAATCCCACACTATACGTGCACCTTGAGCTCAATTATCTCGGTTCCCATGATAGATATCAAAAATTTGCTAATTGATAAAATGTTTGTCAAATTATTTCCTTCATTTTATCAGTTGACAAATTTCAGATATTTCTTACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATACACAAAAAGAAGGAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>AATATTAGATGACGTTGAAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GATACACAAAAAGAAGGAAAGAAAGAAAGATATTGCACAAATTGAAGGCACTTATTTTTATATAATTCTCCTCTCGAAAAGTTCTTCCTACTTCGTTTTTTTCTACAGTATTCCCTCCCAACTGCAATAAATTCGTTTAGTGGTGTTAGAAGGAAGAGAGGAGGGCAAGAAGCAATAATTTTTTCTGAATTCTTTTTTTTCAGAATCTCGATGTCGTTTCTTTTTTCTTCAACGTCATCTAATATT</canonical_amplicon>
		<polymorphic_amplicon>GATACACAAAAAGAAGGAAAGAAAGAAAGATATTGCACAAATTGAAGGCACTTATTTTTATATAATTCTCCTCTCGAAAAGTTCTTCCTACTTCGTTTTTTTCTACAGTATTCCCTCCCAACTGCAATAAATTCGTTTAGTGGTGTTAGRAGGAAGAGAGGAGGGCAAGAAGCAATAATTTTTTCTGAATTCTTTTTTTTCAGAATCTCGATGTCGTTTCTTTTTTCTTCAACGTCATCTAATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6630</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>651607</contig_pos>
        <strand></strand>
        <context>CTCTCGAAAA[G/A]TTCTTCCTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TATTGCACAAATTGAAGGCACTTATTTTTATATAATTCTCCTCTCGAAAA</left_flank>
        <right_flank>TTCTTCCTACTTCGTTTTTTTCTACAGTATTCCCTCCCAACTGCAATAAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGGTCAGAAAAATTTTCAAAATTGAATGAAGATAAGTGTTTCTCTCGTAAATCGCAAAAAAACCGAGAATTCGTAAACTAAAATATTTTCGGTGATGTTATTTATCGTTGTGGGACCTTCGGCCTCGGCCGCCGGCGCTTCTCTTCCACAGCTTAGAATTTTTGTACCAAATTAATAGGCTTCAGATGAAAAACCTCATTTTTCTTCCACTGGAACATTTAAACAATAGCTCCAAATTCAAAAATATGACGAATAATTTTCGGGGACTTCAAACTAGAATTTTTCTACGGAATTCTGAACATTTTGAAAATTTTGAATACCAAGCTCTTTGGCCTACTTCCTACTCTCATCTTTCGATTTCTCTTGAACCGCTTCAGAAAATTTTCTGCAGAAGATTGTACAGTTTTTATTTTTAAGATACACAAAAAGAAGGAAAGAAAGAAAGATATTGCACAAATTGAAGGCACTTATTTTTATATAATTCTCCTCTCGAAAAGTTCTTCCTACTTCGTTTTTTTCTACAGTATTCCCTCCCAACTGCAATAAATTCGTTTAGTGGTGTTAGAAGGAAGAGAGGAGGGCAAGAAGCAATAATTTTTTCTGAATTCTTTTTTTTCAGAATCTCGATGTCGTTTCTTTTTTCTTCAACGTCATCTAATATTATATTATTCTTCTTCCTTTTGCTTTCTTTGTTGTTTTTATTTCCTTTTGTTCATTTTTTCCTATTTTTTCGAACTGTTTCTCCAAGAGTTCACTTCTAGCTCAATTATCTCAACTTCTATTAGAGATATCAAAAATTTGTCTACTGATAAAATATTTAACATAATATCAGAAATGTTTTGTCAGTTGACACATTTTCTATTTCTCTTACAGGAGTTGGGATAATTGAGCTCAAAGTGTGCCTACCATATTTGCTCGTATACATAGAATCCCACACTATACGTGCACCTTGAGCTCAATTATCTCGGTTCCCATGATAGATATCAAAAATTTGCTA</canonical>
            <polymorphic>AAAAGGTCAGAAAAATTTTCAAAATTGAATGAAGATAAGTGTTTCTCTCGTAAATCGCAAAAAAACCGAGAATTCGTAAACTAAAATATTTTCGGTGATGTTATTTATCGTTGTGGGACCTTCGGCCTCGGCCGCCGGCGCTTCTCTTCCACAGCTTAGAATTTTTGTACCAAATTAATAGGCTTCAGATGAAAAACCTCATTTTTCTTCCACTGGAACATTTAAACAATAGCTCCAAATTCAAAAATATGACGAATAATTTTCGGGGACTTCAAACTAGAATTTTTCTACGGAATTCTGAACATTTTGAAAATTTTGAATACCAAGCTCTTTGGCCTACTTCCTACTCTCATCTTTCGATTTCTCTTGAACCGCTTCAGAAAATTTTCTGCAGAAGATTGTACAGTTTTTATTTTTAAGATACACAAAAAGAAGGAAAGAAAGAAAGATATTGCACAAATTGAAGGCACTTATTTTTATATAATTCTCCTCTCGAAAARTTCTTCCTACTTCGTTTTTTTCTACAGTATTCCCTCCCAACTGCAATAAATTCGTTTAGTGGTGTTAGAAGGAAGAGAGGAGGGCAAGAAGCAATAATTTTTTCTGAATTCTTTTTTTTCAGAATCTCGATGTCGTTTCTTTTTTCTTCAACGTCATCTAATATTATATTATTCTTCTTCCTTTTGCTTTCTTTGTTGTTTTTATTTCCTTTTGTTCATTTTTTCCTATTTTTTCGAACTGTTTCTCCAAGAGTTCACTTCTAGCTCAATTATCTCAACTTCTATTAGAGATATCAAAAATTTGTCTACTGATAAAATATTTAACATAATATCAGAAATGTTTTGTCAGTTGACACATTTTCTATTTCTCTTACAGGAGTTGGGATAATTGAGCTCAAAGTGTGCCTACCATATTTGCTCGTATACATAGAATCCCACACTATACGTGCACCTTGAGCTCAATTATCTCGGTTCCCATGATAGATATCAAAAATTTGCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTTGAATACCAAGCTCTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTAAACGAATTTATTGCAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTTTGAATACCAAGCTCTTTGGCCTACTTCCTACTCTCATCTTTCGATTTCTCTTGAACCGCTTCAGAAAATTTTCTGCAGAAGATTGTACAGTTTTTATTTTTAAGATACACAAAAAGAAGGAAAGAAAGAAAGATATTGCACAAATTGAAGGCACTTATTTTTATATAATTCTCCTCTCGAAAAGTTCTTCCTACTTCGTTTTTTTCTACAGTATTCCCTCCCAACTGCAATAAATTCGTTTAGT</canonical_amplicon>
		<polymorphic_amplicon>AAATTTTGAATACCAAGCTCTTTGGCCTACTTCCTACTCTCATCTTTCGATTTCTCTTGAACCGCTTCAGAAAATTTTCTGCAGAAGATTGTACAGTTTTTATTTTTAAGATACACAAAAAGAAGGAAAGAAAGAAAGATATTGCACAAATTGAAGGCACTTATTTTTATATAATTCTCCTCTCGAAAARTTCTTCCTACTTCGTTTTTTTCTACAGTATTCCCTCCCAACTGCAATAAATTCGTTTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6631</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>651557</contig_pos>
        <strand></strand>
        <context>GAAAGAAAGA[T/C]ATTGCACAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGTACAGTTTTTATTTTTAAGATACACAAAAAGAAGGAAAGAAAGAAAGA</left_flank>
        <right_flank>ATTGCACAAATTGAAGGCACTTATTTTTATATAATTCTCCTCTCGAAAAG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAATTTGAAAAAATCGAAAAAAATCTTTAAAAATAGCTGAAAAACCAAAAAGGTCAGAAAAATTTTCAAAATTGAATGAAGATAAGTGTTTCTCTCGTAAATCGCAAAAAAACCGAGAATTCGTAAACTAAAATATTTTCGGTGATGTTATTTATCGTTGTGGGACCTTCGGCCTCGGCCGCCGGCGCTTCTCTTCCACAGCTTAGAATTTTTGTACCAAATTAATAGGCTTCAGATGAAAAACCTCATTTTTCTTCCACTGGAACATTTAAACAATAGCTCCAAATTCAAAAATATGACGAATAATTTTCGGGGACTTCAAACTAGAATTTTTCTACGGAATTCTGAACATTTTGAAAATTTTGAATACCAAGCTCTTTGGCCTACTTCCTACTCTCATCTTTCGATTTCTCTTGAACCGCTTCAGAAAATTTTCTGCAGAAGATTGTACAGTTTTTATTTTTAAGATACACAAAAAGAAGGAAAGAAAGAAAGATATTGCACAAATTGAAGGCACTTATTTTTATATAATTCTCCTCTCGAAAAGTTCTTCCTACTTCGTTTTTTTCTACAGTATTCCCTCCCAACTGCAATAAATTCGTTTAGTGGTGTTAGAAGGAAGAGAGGAGGGCAAGAAGCAATAATTTTTTCTGAATTCTTTTTTTTCAGAATCTCGATGTCGTTTCTTTTTTCTTCAACGTCATCTAATATTATATTATTCTTCTTCCTTTTGCTTTCTTTGTTGTTTTTATTTCCTTTTGTTCATTTTTTCCTATTTTTTCGAACTGTTTCTCCAAGAGTTCACTTCTAGCTCAATTATCTCAACTTCTATTAGAGATATCAAAAATTTGTCTACTGATAAAATATTTAACATAATATCAGAAATGTTTTGTCAGTTGACACATTTTCTATTTCTCTTACAGGAGTTGGGATAATTGAGCTCAAAGTGTGCCTACCATATTTGCTCGTATACATAGAATCCCACACTATACGTGCA</canonical>
            <polymorphic>AAAAAATTTGAAAAAATCGAAAAAAATCTTTAAAAATAGCTGAAAAACCAAAAAGGTCAGAAAAATTTTCAAAATTGAATGAAGATAAGTGTTTCTCTCGTAAATCGCAAAAAAACCGAGAATTCGTAAACTAAAATATTTTCGGTGATGTTATTTATCGTTGTGGGACCTTCGGCCTCGGCCGCCGGCGCTTCTCTTCCACAGCTTAGAATTTTTGTACCAAATTAATAGGCTTCAGATGAAAAACCTCATTTTTCTTCCACTGGAACATTTAAACAATAGCTCCAAATTCAAAAATATGACGAATAATTTTCGGGGACTTCAAACTAGAATTTTTCTACGGAATTCTGAACATTTTGAAAATTTTGAATACCAAGCTCTTTGGCCTACTTCCTACTCTCATCTTTCGATTTCTCTTGAACCGCTTCAGAAAATTTTCTGCAGAAGATTGTACAGTTTTTATTTTTAAGATACACAAAAAGAAGGAAAGAAAGAAAGAYATTGCACAAATTGAAGGCACTTATTTTTATATAATTCTCCTCTCGAAAAGTTCTTCCTACTTCGTTTTTTTCTACAGTATTCCCTCCCAACTGCAATAAATTCGTTTAGTGGTGTTAGAAGGAAGAGAGGAGGGCAAGAAGCAATAATTTTTTCTGAATTCTTTTTTTTCAGAATCTCGATGTCGTTTCTTTTTTCTTCAACGTCATCTAATATTATATTATTCTTCTTCCTTTTGCTTTCTTTGTTGTTTTTATTTCCTTTTGTTCATTTTTTCCTATTTTTTCGAACTGTTTCTCCAAGAGTTCACTTCTAGCTCAATTATCTCAACTTCTATTAGAGATATCAAAAATTTGTCTACTGATAAAATATTTAACATAATATCAGAAATGTTTTGTCAGTTGACACATTTTCTATTTCTCTTACAGGAGTTGGGATAATTGAGCTCAAAGTGTGCCTACCATATTTGCTCGTATACATAGAATCCCACACTATACGTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTTGAATACCAAGCTCTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTAAACGAATTTATTGCAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTTTGAATACCAAGCTCTTTGGCCTACTTCCTACTCTCATCTTTCGATTTCTCTTGAACCGCTTCAGAAAATTTTCTGCAGAAGATTGTACAGTTTTTATTTTTAAGATACACAAAAAGAAGGAAAGAAAGAAAGATATTGCACAAATTGAAGGCACTTATTTTTATATAATTCTCCTCTCGAAAAGTTCTTCCTACTTCGTTTTTTTCTACAGTATTCCCTCCCAACTGCAATAAATTCGTTTAGT</canonical_amplicon>
		<polymorphic_amplicon>AAATTTTGAATACCAAGCTCTTTGGCCTACTTCCTACTCTCATCTTTCGATTTCTCTTGAACCGCTTCAGAAAATTTTCTGCAGAAGATTGTACAGTTTTTATTTTTAAGATACACAAAAAGAAGGAAAGAAAGAAAGAYATTGCACAAATTGAAGGCACTTATTTTTATATAATTCTCCTCTCGAAAAGTTCTTCCTACTTCGTTTTTTTCTACAGTATTCCCTCCCAACTGCAATAAATTCGTTTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6632</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>679910</contig_pos>
        <strand></strand>
        <context>ACAACTATTT[C/A]TTCATTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GACATGCATGAGGGTCGTCGTTTTTTTTTCCGACGACCCAACAACTATTT</left_flank>
        <right_flank>TTCATTTTTTCCCGCTCCTTTTGTTCTTTTTTAGTACATTTCTCTCTATT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGGACTTTTAAAATTTTGACTTTTTCCGAATTTTAGACTTCCTGAAATTTCTGAAATTTTTCCTGAAAAACCTGGATAAATTTTTTAAAAATTTCAAAAAACGAAATTTTGCTTGCTGGGGGACTAGAAAACTCAAGCTAGTCTCTAATACCTTTCCAGATTTTAAGAATTTTCCTCGAATTTTTTCTTTATTTTTATGTGAATTTTTTTCTCAAAAATTTTAAATTCTCCTACCTGATGATTACAAATCACAATGGCTGGTCCATCGACCTGTGTGATCTCATAATTGTAGACTGTCGTATGGATTCCAGTCCATTTGCTCCAGTAGTAGAACGAGTGGAACACATAGTCGGCGCCCTGGAATTTGAATTTTGGGCTACAACGATGATCTTCGATATATAATTTCGCTTTTTTCTCTTTCTAATCTTTCTGGGAGACGCTGTTCCGACATGCATGAGGGTCGTCGTTTTTTTTTCCGACGACCCAACAACTATTTCTTCATTTTTTCCCGCTCCTTTTGTTCTTTTTTAGTACATTTCTCTCTATTTTTTCCCATTTTCTCCCCCTACCTTTGAACCCAACCACGATGGAATCATTGTGACACAAACTTCCATTCCATGCAGAAGAATTGTGATGTAGAAAAACGAAATTCGCACATAATAGTGAAATTTTGTGGAGAAATTGTAGAAAACTAGAAAGACAGCTAGCACGAATAGCAGAATTGTCCAGAAGTCTGCCATCTGGAATTCCAGAATAAATTTTTTTGCGAATATTGAAAGCGAAAAAAATTGGGTTCAAAGAAGAGAATTGATAAAAAAGCGAAAAAAATGATAAGGAAAAAATTCGGGCTACAATGTACGTTGTTCTGTCTATCCTATTTTTCTCTGCAATCTCTTTTCCGACAACTGTTTTTTTTTCTTCAATTTTTCGAATTGTAAAGTTCGACGCGCCCACAGCCTGATCACGAGGACGACCTTTTTATTTCTGATCAACTAGA</canonical>
            <polymorphic>TTTCGGACTTTTAAAATTTTGACTTTTTCCGAATTTTAGACTTCCTGAAATTTCTGAAATTTTTCCTGAAAAACCTGGATAAATTTTTTAAAAATTTCAAAAAACGAAATTTTGCTTGCTGGGGGACTAGAAAACTCAAGCTAGTCTCTAATACCTTTCCAGATTTTAAGAATTTTCCTCGAATTTTTTCTTTATTTTTATGTGAATTTTTTTCTCAAAAATTTTAAATTCTCCTACCTGATGATTACAAATCACAATGGCTGGTCCATCGACCTGTGTGATCTCATAATTGTAGACTGTCGTATGGATTCCAGTCCATTTGCTCCAGTAGTAGAACGAGTGGAACACATAGTCGGCGCCCTGGAATTTGAATTTTGGGCTACAACGATGATCTTCGATATATAATTTCGCTTTTTTCTCTTTCTAATCTTTCTGGGAGACGCTGTTCCGACATGCATGAGGGTCGTCGTTTTTTTTTCCGACGACCCAACAACTATTTMTTCATTTTTTCCCGCTCCTTTTGTTCTTTTTTAGTACATTTCTCTCTATTTTTTCCCATTTTCTCCCCCTACCTTTGAACCCAACCACGATGGAATCATTGTGACACAAACTTCCATTCCATGCAGAAGAATTGTGATGTAGAAAAACGAAATTCGCACATAATAGTGAAATTTTGTGGAGAAATTGTAGAAAACTAGAAAGACAGCTAGCACGAATAGCAGAATTGTCCAGAAGTCTGCCATCTGGAATTCCAGAATAAATTTTTTTGCGAATATTGAAAGCGAAAAAAATTGGGTTCAAAGAAGAGAATTGATAAAAAAGCGAAAAAAATGATAAGGAAAAAATTCGGGCTACAATGTACGTTGTTCTGTCTATCCTATTTTTCTCTGCAATCTCTTTTCCGACAACTGTTTTTTTTTCTTCAATTTTTCGAATTGTAAAGTTCGACGCGCCCACAGCCTGATCACGAGGACGACCTTTTTATTTCTGATCAACTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTCTAATCTTTCTGGGAGAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTCACTATTATGTGCGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCTTTCTAATCTTTCTGGGAGACGCTGTTCCGACATGCATGAGGGTCGTCGTTTTTTTTTCCGACGACCCAACAACTATTTCTTCATTTTTTCCCGCTCCTTTTGTTCTTTTTTAGTACATTTCTCTCTATTTTTTCCCATTTTCTCCCCCTACCTTTGAACCCAACCACGATGGAATCATTGTGACACAAACTTCCATTCCATGCAGAAGAATTGTGATGTAGAAAAACGAAATTCGCACATAATAGTGAAAT</canonical_amplicon>
		<polymorphic_amplicon>TCTTTCTAATCTTTCTGGGAGACGCTGTTCCGACATGCATGAGGGTCGTCGTTTTTTTTTCCGACGACCCAACAACTATTTMTTCATTTTTTCCCGCTCCTTTTGTTCTTTTTTAGTACATTTCTCTCTATTTTTTCCCATTTTCTCCCCCTACCTTTGAACCCAACCACGATGGAATCATTGTGACACAAACTTCCATTCCATGCAGAAGAATTGTGATGTAGAAAAACGAAATTCGCACATAATAGTGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6633</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>679966</contig_pos>
        <strand></strand>
        <context>CTATTTTTTC[C/T]CATTTYCTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTCCCGCTCCTTTTGTTCTTTTTTAGTACATTTCTCTCTATTTTTTC</left_flank>
        <right_flank>CATTTTCTCCCCCTACCTTTGAACCCAACCACGATGGAATCATTGTGACA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTTTCCTGAAAAACCTGGATAAATTTTTTAAAAATTTCAAAAAACGAAATTTTGCTTGCTGGGGGACTAGAAAACTCAAGCTAGTCTCTAATACCTTTCCAGATTTTAAGAATTTTCCTCGAATTTTTTCTTTATTTTTATGTGAATTTTTTTCTCAAAAATTTTAAATTCTCCTACCTGATGATTACAAATCACAATGGCTGGTCCATCGACCTGTGTGATCTCATAATTGTAGACTGTCGTATGGATTCCAGTCCATTTGCTCCAGTAGTAGAACGAGTGGAACACATAGTCGGCGCCCTGGAATTTGAATTTTGGGCTACAACGATGATCTTCGATATATAATTTCGCTTTTTTCTCTTTCTAATCTTTCTGGGAGACGCTGTTCCGACATGCATGAGGGTCGTCGTTTTTTTTTCCGACGACCCAACAACTATTTCTTCATTTTTTCCCGCTCCTTTTGTTCTTTTTTAGTACATTTCTCTCTATTTTTTCCCATTTTCTCCCCCTACCTTTGAACCCAACCACGATGGAATCATTGTGACACAAACTTCCATTCCATGCAGAAGAATTGTGATGTAGAAAAACGAAATTCGCACATAATAGTGAAATTTTGTGGAGAAATTGTAGAAAACTAGAAAGACAGCTAGCACGAATAGCAGAATTGTCCAGAAGTCTGCCATCTGGAATTCCAGAATAAATTTTTTTGCGAATATTGAAAGCGAAAAAAATTGGGTTCAAAGAAGAGAATTGATAAAAAAGCGAAAAAAATGATAAGGAAAAAATTCGGGCTACAATGTACGTTGTTCTGTCTATCCTATTTTTCTCTGCAATCTCTTTTCCGACAACTGTTTTTTTTTCTTCAATTTTTCGAATTGTAAAGTTCGACGCGCCCACAGCCTGATCACGAGGACGACCTTTTTATTTCTGATCAACTAGAAAGGCGAAAAAAAGCCAATAATTGTCTGAAAACAGTGTATTTTTGTTGTTTTTTGG</canonical>
            <polymorphic>AAATTTTTCCTGAAAAACCTGGATAAATTTTTTAAAAATTTCAAAAAACGAAATTTTGCTTGCTGGGGGACTAGAAAACTCAAGCTAGTCTCTAATACCTTTCCAGATTTTAAGAATTTTCCTCGAATTTTTTCTTTATTTTTATGTGAATTTTTTTCTCAAAAATTTTAAATTCTCCTACCTGATGATTACAAATCACAATGGCTGGTCCATCGACCTGTGTGATCTCATAATTGTAGACTGTCGTATGGATTCCAGTCCATTTGCTCCAGTAGTAGAACGAGTGGAACACATAGTCGGCGCCCTGGAATTTGAATTTTGGGCTACAACGATGATCTTCGATATATAATTTCGCTTTTTTCTCTTTCTAATCTTTCTGGGAGACGCTGTTCCGACATGCATGAGGGTCGTCGTTTTTTTTTCCGACGACCCAACAACTATTTCTTCATTTTTTCCCGCTCCTTTTGTTCTTTTTTAGTACATTTCTCTCTATTTTTTCYCATTTTCTCCCCCTACCTTTGAACCCAACCACGATGGAATCATTGTGACACAAACTTCCATTCCATGCAGAAGAATTGTGATGTAGAAAAACGAAATTCGCACATAATAGTGAAATTTTGTGGAGAAATTGTAGAAAACTAGAAAGACAGCTAGCACGAATAGCAGAATTGTCCAGAAGTCTGCCATCTGGAATTCCAGAATAAATTTTTTTGCGAATATTGAAAGCGAAAAAAATTGGGTTCAAAGAAGAGAATTGATAAAAAAGCGAAAAAAATGATAAGGAAAAAATTCGGGCTACAATGTACGTTGTTCTGTCTATCCTATTTTTCTCTGCAATCTCTTTTCCGACAACTGTTTTTTTTTCTTCAATTTTTCGAATTGTAAAGTTCGACGCGCCCACAGCCTGATCACGAGGACGACCTTTTTATTTCTGATCAACTAGAAAGGCGAAAAAAAGCCAATAATTGTCTGAAAACAGTGTATTTTTGTTGTTTTTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTCTAATCTTTCTGGGAGAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTCACTATTATGTGCGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCTTTCTAATCTTTCTGGGAGACGCTGTTCCGACATGCATGAGGGTCGTCGTTTTTTTTTCCGACGACCCAACAACTATTTCTTCATTTTTTCCCGCTCCTTTTGTTCTTTTTTAGTACATTTCTCTCTATTTTTTCCCATTTTCTCCCCCTACCTTTGAACCCAACCACGATGGAATCATTGTGACACAAACTTCCATTCCATGCAGAAGAATTGTGATGTAGAAAAACGAAATTCGCACATAATAGTGAAAT</canonical_amplicon>
		<polymorphic_amplicon>TCTTTCTAATCTTTCTGGGAGACGCTGTTCCGACATGCATGAGGGTCGTCGTTTTTTTTTCCGACGACCCAACAACTATTTCTTCATTTTTTCCCGCTCCTTTTGTTCTTTTTTAGTACATTTCTCTCTATTTTTTCYCATTTTCTCCCCCTACCTTTGAACCCAACCACGATGGAATCATTGTGACACAAACTTCCATTCCATGCAGAAGAATTGTGATGTAGAAAAACGAAATTCGCACATAATAGTGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6634</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>680179</contig_pos>
        <strand>+</strand>
        <context>AAATTTTTTT[A/G]CGAATATTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCAGAATTGTCCAGAAGTCTGCCATCTGGAATTCCAGAATAAATTTTTTT</left_flank>
        <right_flank>CGAATATTGAAAGCGAAAAAAATTGGGTTCAAAGAAGAGAATTGATAAAA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACCTGTGTGATCTCATAATTGTAGACTGTCGTATGGATTCCAGTCCATTTGCTCCAGTAGTAGAACGAGTGGAACACATAGTCGGCGCCCTGGAATTTGAATTTTGGGCTACAACGATGATCTTCGATATATAATTTCGCTTTTTTCTCTTTCTAATCTTTCTGGGAGACGCTGTTCCGACATGCATGAGGGTCGTCGTTTTTTTTTCCGACGACCCAACAACTATTTCTTCATTTTTTCCCGCTCCTTTTGTTCTTTTTTAGTACATTTCTCTCTATTTTTTCCCATTTTCTCCCCCTACCTTTGAACCCAACCACGATGGAATCATTGTGACACAAACTTCCATTCCATGCAGAAGAATTGTGATGTAGAAAAACGAAATTCGCACATAATAGTGAAATTTTGTGGAGAAATTGTAGAAAACTAGAAAGACAGCTAGCACGAATAGCAGAATTGTCCAGAAGTCTGCCATCTGGAATTCCAGAATAAATTTTTTTGCGAATATTGAAAGCGAAAAAAATTGGGTTCAAAGAAGAGAATTGATAAAAAAGCGAAAAAAATGATAAGGAAAAAATTCGGGCTACAATGTACGTTGTTCTGTCTATCCTATTTTTCTCTGCAATCTCTTTTCCGACAACTGTTTTTTTTTCTTCAATTTTTCGAATTGTAAAGTTCGACGCGCCCACAGCCTGATCACGAGGACGACCTTTTTATTTCTGATCAACTAGAAAGGCGAAAAAAAGCCAATAATTGTCTGAAAACAGTGTATTTTTGTTGTTTTTTGGTTAAAAAATCACTGAGAAATCCAGCGTCGTAAAGTCAAATGCATCGGATACACTCCGGTGTTTGCACACTTGCGCACCGTACCACATCGAAAAACGGAGGGAACTTTAAATTCGAGTTTTTATTTGGAAAAAAGCGAAAAAAAAGAAAAGAGAGACAAAAGTACGAAAAATGATAAAAGTGGTGCGAAAAGAAAGGGCAATCTGGCGACGACG</canonical>
            <polymorphic>CGACCTGTGTGATCTCATAATTGTAGACTGTCGTATGGATTCCAGTCCATTTGCTCCAGTAGTAGAACGAGTGGAACACATAGTCGGCGCCCTGGAATTTGAATTTTGGGCTACAACGATGATCTTCGATATATAATTTCGCTTTTTTCTCTTTCTAATCTTTCTGGGAGACGCTGTTCCGACATGCATGAGGGTCGTCGTTTTTTTTTCCGACGACCCAACAACTATTTCTTCATTTTTTCCCGCTCCTTTTGTTCTTTTTTAGTACATTTCTCTCTATTTTTTCCCATTTTCTCCCCCTACCTTTGAACCCAACCACGATGGAATCATTGTGACACAAACTTCCATTCCATGCAGAAGAATTGTGATGTAGAAAAACGAAATTCGCACATAATAGTGAAATTTTGTGGAGAAATTGTAGAAAACTAGAAAGACAGCTAGCACGAATAGCAGAATTGTCCAGAAGTCTGCCATCTGGAATTCCAGAATAAATTTTTTTRCGAATATTGAAAGCGAAAAAAATTGGGTTCAAAGAAGAGAATTGATAAAAAAGCGAAAAAAATGATAAGGAAAAAATTCGGGCTACAATGTACGTTGTTCTGTCTATCCTATTTTTCTCTGCAATCTCTTTTCCGACAACTGTTTTTTTTTCTTCAATTTTTCGAATTGTAAAGTTCGACGCGCCCACAGCCTGATCACGAGGACGACCTTTTTATTTCTGATCAACTAGAAAGGCGAAAAAAAGCCAATAATTGTCTGAAAACAGTGTATTTTTGTTGTTTTTTGGTTAAAAAATCACTGAGAAATCCAGCGTCGTAAAGTCAAATGCATCGGATACACTCCGGTGTTTGCACACTTGCGCACCGTACCACATCGAAAAACGGAGGGAACTTTAAATTCGAGTTTTTATTTGGAAAAAAGCGAAAAAAAAGAAAAGAGAGACAAAAGTACGAAAAATGATAAAAGTGGTGCGAAAAGAAAGGGCAATCTGGCGACGACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATTCGCACATAATAGTGAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGATTGCAGAGAAAAATAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAATTCGCACATAATAGTGAAATTTTGTGGAGAAATTGTAGAAAACTAGAAAGACAGCTAGCACGAATAGCAGAATTGTCCAGAAGTCTGCCATCTGGAATTCCAGAATAAATTTTTTTGCGAATATTGAAAGCGAAAAAAATTGGGTTCAAAGAAGAGAATTGATAAAAAAGCGAAAAAAATGATAAGGAAAAAATTCGGGCTACAATGTACGTTGTTCTGTCTATCCTATTTTTCTCTGCAATCTC</canonical_amplicon>
		<polymorphic_amplicon>GAAATTCGCACATAATAGTGAAATTTTGTGGAGAAATTGTAGAAAACTAGAAAGACAGCTAGCACGAATAGCAGAATTGTCCAGAAGTCTGCCATCTGGAATTCCAGAATAAATTTTTTTRCGAATATTGAAAGCGAAAAAAATTGGGTTCAAAGAAGAGAATTGATAAAAAAGCGAAAAAAATGATAAGGAAAAAATTCGGGCTACAATGTACGTTGTTCTGTCTATCCTATTTTTCTCTGCAATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6635</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>681337</contig_pos>
        <strand>+</strand>
        <context>GTGAGAAAAG[A/T]GTTTTGTTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAGAACCGCCCGGGTGGTCTCTCGGTGGAATGGAGAAAAGTGAGAAAAG</left_flank>
        <right_flank>GTTTTGTTTGCGATGAGTAGTCTAGCTTTCCACAATTACAGTAGGCTTTT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTCAAAGAAACATTTTAAAACTACAATTCGAAACTTTTTGAAAATTTGAGTTTTGCAATCGCGCTCTATGGATAAAACTCAATTAAATGACGTTTCCCTTTGTTTTCTTCAATTTTTGAGTTCCCAAGCGAGTCTATAATATCGCTCTATTGACAATCCGCGACCTACATCGACGAAAATGCATTTTCCCAACCAAAAAAAAAACCGGGCGGGTCGGGGCGAATGTATGTAATTCGAGAACGCGTTTCTCCCCCATTGCTCACTCCTTCTCTCAATTTTTTTTTGTCCCAAATGTTTTTTCAAAAATCCAATTTTCCTCTTTTTGACCTCATATCGATTATGTTAAAGTAAAAAGAAGAGAAAAGTAGTCTCAAGTTTTTTTGTTCGAAAAAAAGAAGCCTAAACGATCATATTTGTTTTGTATCTCTTTTCGTTCCTGTCTGGGGCGAAGAACCGCCCGGGTGGTCTCTCGGTGGAATGGAGAAAAGTGAGAAAAGAGTTTTGTTTGCGATGAGTAGTCTAGCTTTCCACAATTACAGTAGGCTTTTGGGATACTGTACCTATCCTAAATTGTGTTTCATTGAACTTTTTAGAGATCTCCGTCATTTTTAATATGGGAGGTATTTGGTATTGAAAAGTGCAAACTTCATGCTGTGAGCCATGGGCACAGGCCTCAATTTTCATTTCCCCCTTTTCCCCCCTCAACTACAGTAACCCTTAAAAGTTCCAAAAGTTCATTTGTATCCATCATCATTATCTGTGTTCTCTTTTCCAAAGTAGTTTCTGTTCTTCAGTTTCCTGTCACATCATCATCATCATTTTCTCCAATTTTGTAACGAACGAAACACACTTTTTTTTCCTTTTTTTTCATGTCAGTTAATAGTTGTACTTTTGCGGAAAAAAAGAAAAAGAAAATCATTCCGTTTCTTTTTCTCGTTTTGTCACGTTTTTGGGATGGAGACCTCTTTTAATATTGTAGTTTGCTAACGAGATAAATG</canonical>
            <polymorphic>AACTCAAAGAAACATTTTAAAACTACAATTCGAAACTTTTTGAAAATTTGAGTTTTGCAATCGCGCTCTATGGATAAAACTCAATTAAATGACGTTTCCCTTTGTTTTCTTCAATTTTTGAGTTCCCAAGCGAGTCTATAATATCGCTCTATTGACAATCCGCGACCTACATCGACGAAAATGCATTTTCCCAACCAAAAAAAAAACCGGGCGGGTCGGGGCGAATGTATGTAATTCGAGAACGCGTTTCTCCCCCATTGCTCACTCCTTCTCTCAATTTTTTTTTGTCCCAAATGTTTTTTCAAAAATCCAATTTTCCTCTTTTTGACCTCATATCGATTATGTTAAAGTAAAAAGAAGAGAAAAGTAGTCTCAAGTTTTTTTGTTCGAAAAAAAGAAGCCTAAACGATCATATTTGTTTTGTATCTCTTTTCGTTCCTGTCTGGGGCGAAGAACCGCCCGGGTGGTCTCTCGGTGGAATGGAGAAAAGTGAGAAAAGWGTTTTGTTTGCGATGAGTAGTCTAGCTTTCCACAATTACAGTAGGCTTTTGGGATACTGTACCTATCCTAAATTGTGTTTCATTGAACTTTTTAGAGATCTCCGTCATTTTTAATATGGGAGGTATTTGGTATTGAAAAGTGCAAACTTCATGCTGTGAGCCATGGGCACAGGCCTCAATTTTCATTTCCCCCTTTTCCCCCCTCAACTACAGTAACCCTTAAAAGTTCCAAAAGTTCATTTGTATCCATCATCATTATCTGTGTTCTCTTTTCCAAAGTAGTTTCTGTTCTTCAGTTTCCTGTCACATCATCATCATCATTTTCTCCAATTTTGTAACGAACGAAACACACTTTTTTTTCCTTTTTTTTCATGTCAGTTAATAGTTGTACTTTTGCGGAAAAAAAGAAAAAGAAAATCATTCCGTTTCTTTTTCTCGTTTTGTCACGTTTTTGGGATGGAGACCTCTTTTAATATTGTAGTTTGCTAACGAGATAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAGCCTAAACGATCATATTT</pcr_primer_p1>
		<pcr_primer_p2>CACTTTTCAATACCAAATACCTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGAAGCCTAAACGATCATATTTGTTTTGTATCTCTTTTCGTTCCTGTCTGGGGCGAAGAACCGCCCGGGTGGTCTCTCGGTGGAATGGAGAAAAGTGAGAAAAGAGTTTTGTTTGCGATGAGTAGTCTAGCTTTCCACAATTACAGTAGGCTTTTGGGATACTGTACCTATCCTAAATTGTGTTTCATTGAACTTTTTAGAGATCTCCGTCATTTTTAATATGGGAGGTATTTGGTATTGAAAAGTG</canonical_amplicon>
		<polymorphic_amplicon>AAGAAGCCTAAACGATCATATTTGTTTTGTATCTCTTTTCGTTCCTGTCTGGGGCGAAGAACCGCCCGGGTGGTCTCTCGGTGGAATGGAGAAAAGTGAGAAAAGWGTTTTGTTTGCGATGAGTAGTCTAGCTTTCCACAATTACAGTAGGCTTTTGGGATACTGTACCTATCCTAAATTGTGTTTCATTGAACTTTTTAGAGATCTCCGTCATTTTTAATATGGGAGGTATTTGGTATTGAAAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6636</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>681822</contig_pos>
        <strand>+</strand>
        <context>ATTGTAGTTT[A/G]CTAACGAGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCGTTTTGTCACGTTTTTGGGATGGAGACCTCTTTTAATATTGTAGTTT</left_flank>
        <right_flank>CTAACGAGATAAATGTAGAGCACCACAGTATACTTGCCCTCTTTGAGCTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGTGAGAAAAGAGTTTTGTTTGCGATGAGTAGTCTAGCTTTCCACAATTACAGTAGGCTTTTGGGATACTGTACCTATCCTAAATTGTGTTTCATTGAACTTTTTAGAGATCTCCGTCATTTTTAATATGGGAGGTATTTGGTATTGAAAAGTGCAAACTTCATGCTGTGAGCCATGGGCACAGGCCTCAATTTTCATTTCCCCCTTTTCCCCCCTCAACTACAGTAACCCTTAAAAGTTCCAAAAGTTCATTTGTATCCATCATCATTATCTGTGTTCTCTTTTCCAAAGTAGTTTCTGTTCTTCAGTTTCCTGTCACATCATCATCATCATTTTCTCCAATTTTGTAACGAACGAAACACACTTTTTTTTCCTTTTTTTTCATGTCAGTTAATAGTTGTACTTTTGCGGAAAAAAAGAAAAAGAAAATCATTCCGTTTCTTTTTCTCGTTTTGTCACGTTTTTGGGATGGAGACCTCTTTTAATATTGTAGTTTGCTAACGAGATAAATGTAGAGCACCACAGTATACTTGCCCTCTTTGAGCTTAATTATCTCGGTTCTTATGAGAGATACCAGACATCTGTCCACTGATAAAATATTGGAGATATTATTATAAACCTTTCATCAGTTGACACATTTTCGTTACCTTTCACAGGAACCGAGATACATTTCTCAAATTTTAAAGTTAAGAGGGCTTACGGTACTTGAACTATGAGATCAATTATCTCAATTTCTGAAAAAGATATCGAAAGGCTGCCAACTAATGAAATGTTGGTGATATTATAATGAATGTTTTATCAGTTGACAAATGTTTTATATCTCTTACAGGAACGGAGATAATTAACACAAATTTAAAAGTTTTTTCTTCCGCTCATTTTCCCATGAAAACGATAAAATGGAGCTCGAAAAAAACGGAAAAAAACGGCGAAATTGGCTCCGAACAATAGAACAATTACATGAAATTTTATATTCAGAGGCTGGGGGAAGAATTGGGAA</canonical>
            <polymorphic>AAAAGTGAGAAAAGAGTTTTGTTTGCGATGAGTAGTCTAGCTTTCCACAATTACAGTAGGCTTTTGGGATACTGTACCTATCCTAAATTGTGTTTCATTGAACTTTTTAGAGATCTCCGTCATTTTTAATATGGGAGGTATTTGGTATTGAAAAGTGCAAACTTCATGCTGTGAGCCATGGGCACAGGCCTCAATTTTCATTTCCCCCTTTTCCCCCCTCAACTACAGTAACCCTTAAAAGTTCCAAAAGTTCATTTGTATCCATCATCATTATCTGTGTTCTCTTTTCCAAAGTAGTTTCTGTTCTTCAGTTTCCTGTCACATCATCATCATCATTTTCTCCAATTTTGTAACGAACGAAACACACTTTTTTTTCCTTTTTTTTCATGTCAGTTAATAGTTGTACTTTTGCGGAAAAAAAGAAAAAGAAAATCATTCCGTTTCTTTTTCTCGTTTTGTCACGTTTTTGGGATGGAGACCTCTTTTAATATTGTAGTTTRCTAACGAGATAAATGTAGAGCACCACAGTATACTTGCCCTCTTTGAGCTTAATTATCTCGGTTCTTATGAGAGATACCAGACATCTGTCCACTGATAAAATATTGGAGATATTATTATAAACCTTTCATCAGTTGACACATTTTCGTTACCTTTCACAGGAACCGAGATACATTTCTCAAATTTTAAAGTTAAGAGGGCTTACGGTACTTGAACTATGAGATCAATTATCTCAATTTCTGAAAAAGATATCGAAAGGCTGCCAACTAATGAAATGTTGGTGATATTATAATGAATGTTTTATCAGTTGACAAATGTTTTATATCTCTTACAGGAACGGAGATAATTAACACAAATTTAAAAGTTTTTTCTTCCGCTCATTTTCCCATGAAAACGATAAAATGGAGCTCGAAAAAAACGGAAAAAAACGGCGAAATTGGCTCCGAACAATAGAACAATTACATGAAATTTTATATTCAGAGGCTGGGGGAAGAATTGGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCGTTTTGTCACGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GCTCCATTTTATCGTTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>458</pcr_amplicon_size>
		<canonical_amplicon>TCTCGTTTTGTCACGTTTTTGGGATGGAGACCTCTTTTAATATTGTAGTTTGCTAACGAGATAAATGTAGAGCACCACAGTATACTTGCCCTCTTTGAGCTTAATTATCTCGGTTCTTATGAGAGATACCAGACATCTGTCCACTGATAAAATATTGGAGATATTATTATAAACCTTTCATCAGTTGACACATTTTCGTTACCTTTCACAGGAACCGAGATACATTTCTCAAATTTTAAAGTTAAGAGGGCTTACGGTACTTGAACTATGAGATCAATTATCTCAATTTCTGAAAAAGATATCGAAAGGCTGCCAACTAATGAAATGTTGGTGATATTATAATGAATGTTTTATCAGTTGACAAATGTTTTATATCTCTTACAGGAACGGAGATAATTAACACAAATTTAAAAGTTTTTTCTTCCGCTCATTTTCCCATGAAAACGATAAAATGGAGC</canonical_amplicon>
		<polymorphic_amplicon>TCTCGTTTTGTCACGTTTTTGGGATGGAGACCTCTTTTAATATTGTAGTTTRCTAACGAGATAAATGTAGAGCACCACAGTATACTTGCCCTCTTTGAGCTTAATTATCTCGGTTCTTATGAGAGATACCAGACATCTGTCCACTGATAAAATATTGGAGATATTATTATAAACCTTTCATCAGTTGACACATTTTCGTTACCTTTCACAGGAACCGAGATACATTTCTCAAATTTTAAAGTTAAGAGGGCTTACGGTACTTGAACTATGAGATCAATTATCTCAATTTCTGAAAAAGATATCGAAAGGCTGCCAACTAATGAAATGTTGGTGATATTATAATGAATGTTTTATCAGTTGACAAATGTTTTATATCTCTTACAGGAACGGAGATAATTAACACAAATTTAAAAGTTTTTTCTTCCGCTCATTTTCCCATGAAAACGATAAAATGGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6650</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>701791</contig_pos>
        <strand>+</strand>
        <context>CTCAATAGAA[A/G]AGGGTTACTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCCGTGGTTTGGGTTGCTTTCGGCGAGCTTCGAGTCAAGCTCAATAGAA</left_flank>
        <right_flank>AGGGTTACTGTAGCTGTGGCTCCTAGAAAAAAATCGTGAAAAATTTAAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGCGAGGTGCTGGTGGTTGACGATAGTGGGGTGGGAGAACAAAATAAAAAAGATCGGTTTGGTTTGGAGAATTTTCGAAAAAATGGAATTCAAGAAAAAGGTTACTGTAGTTCCTGAAAAAAGGCCGATATGATTACGGTAGATGAGTTTAGGGTCGAACTCAATAAAAGAGGGTTACTGTAGCTTTCACACTGTGAGGTTACTGTAGTTGTGGCTCCTAGAAGAATTAGTGATAAAATTCGGATGATTGACGAAAAGAAAAGTTACAGTTAGAAGTTTTAAAAACTGAATTCAAGTAAGGTTACTGTAGGTATAGCTCTTGGAAGAGAACCACGACGTAGATTATTGTAAGAAGGAGTTACTGCAGTTCCTGGAGAATTGTCAAGGTGTAGGTTACTGTAGGAAAGAGTTACTGTAATTCCTGTGAAAAGGTGTAGATTACTGTAGTCCCGTGGTTTGGGTTGCTTTCGGCGAGCTTCGAGTCAAGCTCAATAGAAAAGGGTTACTGTAGCTGTGGCTCCTAGAAAAAAATCGTGAAAAATTTAAACAGATCATAACCCTATGATTGTACTTTGAGCTCAATTATCTCGGTTCCTGTGAGAGACATCAACAACCTGTCAACTGATAAAATATTTATCATAATATTTCAAACATTTTTATAGTTAACAAAATTTTGATATCTCTCATAAGAACCGAGATAATTGAGCTCAAATGCACGTATAGGGTGGGCTTCTATTAGAGGAGGACCTACGGTAGTAGCACTTTGAGCTCAATTGTATCACTTTCAGTGAAATATATCAAAAATCTGTCAACTGATGAAATGTTGGTGATATTATGACAAACATTTCATCAGTTAACACACTTTTGATATCTCTCAAAGGAACCGAGATAATTAAGCTCACAGTTACGGTATCAGCTAAACTCGAAAAAACGTATGAATCACTCTAGGTGCGAAATATCGGAATCAGAATTTGTTATTCTGTTTAGTTTTGCAAAAA</canonical>
            <polymorphic>TGAGCGAGGTGCTGGTGGTTGACGATAGTGGGGTGGGAGAACAAAATAAAAAAGATCGGTTTGGTTTGGAGAATTTTCGAAAAAATGGAATTCAAGAAAAAGGTTACTGTAGTTCCTGAAAAAAGGCCGATATGATTACGGTAGATGAGTTTAGGGTCGAACTCAATAAAAGAGGGTTACTGTAGCTTTCACACTGTGAGGTTACTGTAGTTGTGGCTCCTAGAAGAATTAGTGATAAAATTCGGATGATTGACGAAAAGAAAAGTTACAGTTAGAAGTTTTAAAAACTGAATTCAAGTAAGGTTACTGTAGGTATAGCTCTTGGAAGAGAACCACGACGTAGATTATTGTAAGAAGGAGTTACTGCAGTTCCTGGAGAATTGTCAAGGTGTAGGTTACTGTAGGAAAGAGTTACTGTAATTCCTGTGAAAAGGTGTAGATTACTGTAGTCCCGTGGTTTGGGTTGCTTTCGGCGAGCTTCGAGTCAAGCTCAATAGAARAGGGTTACTGTAGCTGTGGCTCCTAGAAAAAAATCGTGAAAAATTTAAACAGATCATAACCCTATGATTGTACTTTGAGCTCAATTATCTCGGTTCCTGTGAGAGACATCAACAACCTGTCAACTGATAAAATATTTATCATAATATTTCAAACATTTTTATAGTTAACAAAATTTTGATATCTCTCATAAGAACCGAGATAATTGAGCTCAAATGCACGTATAGGGTGGGCTTCTATTAGAGGAGGACCTACGGTAGTAGCACTTTGAGCTCAATTGTATCACTTTCAGTGAAATATATCAAAAATCTGTCAACTGATGAAATGTTGGTGATATTATGACAAACATTTCATCAGTTAACACACTTTTGATATCTCTCAAAGGAACCGAGATAATTAAGCTCACAGTTACGGTATCAGCTAAACTCGAAAAAACGTATGAATCACTCTAGGTGCGAAATATCGGAATCAGAATTTGTTATTCTGTTTAGTTTTGCAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGATTACTGTAGTCCCGTGGT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCGAGTTTAGCTGATACC</pcr_primer_p2>
		<pcr_amplicon_size>496</pcr_amplicon_size>
		<canonical_amplicon>TAGATTACTGTAGTCCCGTGGTTTGGGTTGCTTTCGGCGAGCTTCGAGTCAAGCTCAATAGAAAAGGGTTACTGTAGCTGTGGCTCCTAGAAAAAAATCGTGAAAAATTTAAACAGATCATAACCCTATGATTGTACTTTGAGCTCAATTATCTCGGTTCCTGTGAGAGACATCAACAACCTGTCAACTGATAAAATATTTATCATAATATTTCAAACATTTTTATAGTTAACAAAATTTTGATATCTCTCATAAGAACCGAGATAATTGAGCTCAAATGCACGTATAGGGTGGGCTTCTATTAGAGGAGGACCTACGGTAGTAGCACTTTGAGCTCAATTGTATCACTTTCAGTGAAATATATCAAAAATCTGTCAACTGATGAAATGTTGGTGATATTATGACAAACATTTCATCAGTTAACACACTTTTGATATCTCTCAAAGGAACCGAGATAATTAAGCTCACAGTTACGGTATCAGCTAAACTCGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TAGATTACTGTAGTCCCGTGGTTTGGGTTGCTTTCGGCGAGCTTCGAGTCAAGCTCAATAGAARAGGGTTACTGTAGCTGTGGCTCCTAGAAAAAAATCGTGAAAAATTTAAACAGATCATAACCCTATGATTGTACTTTGAGCTCAATTATCTCGGTTCCTGTGAGAGACATCAACAACCTGTCAACTGATAAAATATTTATCATAATATTTCAAACATTTTTATAGTTAACAAAATTTTGATATCTCTCATAAGAACCGAGATAATTGAGCTCAAATGCACGTATAGGGTGGGCTTCTATTAGAGGAGGACCTACGGTAGTAGCACTTTGAGCTCAATTGTATCACTTTCAGTGAAATATATCAAAAATCTGTCAACTGATGAAATGTTGGTGATATTATGACAAACATTTCATCAGTTAACACACTTTTGATATCTCTCAAAGGAACCGAGATAATTAAGCTCACAGTTACGGTATCAGCTAAACTCGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6651</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>701845</contig_pos>
        <strand>+</strand>
        <context>TTTAAACAGA[G/T]CATAACCCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTACTGTAGCTGTGGCTCCTAGAAAAAAATCGTGAAAAATTTAAACAGA</left_flank>
        <right_flank>CATAACCCTATGATTGTACTTTGAGCTCAATTATCTCGGTTCCTGTGAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGGTTTGGTTTGGAGAATTTTCGAAAAAATGGAATTCAAGAAAAAGGTTACTGTAGTTCCTGAAAAAAGGCCGATATGATTACGGTAGATGAGTTTAGGGTCGAACTCAATAAAAGAGGGTTACTGTAGCTTTCACACTGTGAGGTTACTGTAGTTGTGGCTCCTAGAAGAATTAGTGATAAAATTCGGATGATTGACGAAAAGAAAAGTTACAGTTAGAAGTTTTAAAAACTGAATTCAAGTAAGGTTACTGTAGGTATAGCTCTTGGAAGAGAACCACGACGTAGATTATTGTAAGAAGGAGTTACTGCAGTTCCTGGAGAATTGTCAAGGTGTAGGTTACTGTAGGAAAGAGTTACTGTAATTCCTGTGAAAAGGTGTAGATTACTGTAGTCCCGTGGTTTGGGTTGCTTTCGGCGAGCTTCGAGTCAAGCTCAATAGAAAAGGGTTACTGTAGCTGTGGCTCCTAGAAAAAAATCGTGAAAAATTTAAACAGATCATAACCCTATGATTGTACTTTGAGCTCAATTATCTCGGTTCCTGTGAGAGACATCAACAACCTGTCAACTGATAAAATATTTATCATAATATTTCAAACATTTTTATAGTTAACAAAATTTTGATATCTCTCATAAGAACCGAGATAATTGAGCTCAAATGCACGTATAGGGTGGGCTTCTATTAGAGGAGGACCTACGGTAGTAGCACTTTGAGCTCAATTGTATCACTTTCAGTGAAATATATCAAAAATCTGTCAACTGATGAAATGTTGGTGATATTATGACAAACATTTCATCAGTTAACACACTTTTGATATCTCTCAAAGGAACCGAGATAATTAAGCTCACAGTTACGGTATCAGCTAAACTCGAAAAAACGTATGAATCACTCTAGGTGCGAAATATCGGAATCAGAATTTGTTATTCTGTTTAGTTTTGCAAAAATTTGCAACATAAAATTGTTGATCTGTTTCTTCCATTTTTAGGAATGTTCTTGAC</canonical>
            <polymorphic>ATCGGTTTGGTTTGGAGAATTTTCGAAAAAATGGAATTCAAGAAAAAGGTTACTGTAGTTCCTGAAAAAAGGCCGATATGATTACGGTAGATGAGTTTAGGGTCGAACTCAATAAAAGAGGGTTACTGTAGCTTTCACACTGTGAGGTTACTGTAGTTGTGGCTCCTAGAAGAATTAGTGATAAAATTCGGATGATTGACGAAAAGAAAAGTTACAGTTAGAAGTTTTAAAAACTGAATTCAAGTAAGGTTACTGTAGGTATAGCTCTTGGAAGAGAACCACGACGTAGATTATTGTAAGAAGGAGTTACTGCAGTTCCTGGAGAATTGTCAAGGTGTAGGTTACTGTAGGAAAGAGTTACTGTAATTCCTGTGAAAAGGTGTAGATTACTGTAGTCCCGTGGTTTGGGTTGCTTTCGGCGAGCTTCGAGTCAAGCTCAATAGAAAAGGGTTACTGTAGCTGTGGCTCCTAGAAAAAAATCGTGAAAAATTTAAACAGAKCATAACCCTATGATTGTACTTTGAGCTCAATTATCTCGGTTCCTGTGAGAGACATCAACAACCTGTCAACTGATAAAATATTTATCATAATATTTCAAACATTTTTATAGTTAACAAAATTTTGATATCTCTCATAAGAACCGAGATAATTGAGCTCAAATGCACGTATAGGGTGGGCTTCTATTAGAGGAGGACCTACGGTAGTAGCACTTTGAGCTCAATTGTATCACTTTCAGTGAAATATATCAAAAATCTGTCAACTGATGAAATGTTGGTGATATTATGACAAACATTTCATCAGTTAACACACTTTTGATATCTCTCAAAGGAACCGAGATAATTAAGCTCACAGTTACGGTATCAGCTAAACTCGAAAAAACGTATGAATCACTCTAGGTGCGAAATATCGGAATCAGAATTTGTTATTCTGTTTAGTTTTGCAAAAATTTGCAACATAAAATTGTTGATCTGTTTCTTCCATTTTTAGGAATGTTCTTGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>497 468 35</canonical_bands>
                <polymorphic_bands>965 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACTGTAGCTGTGGCTCCT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCGAGTTTAGCTGATACC</pcr_primer_p2>
		<pcr_amplicon_size>428</pcr_amplicon_size>
		<canonical_amplicon>TTACTGTAGCTGTGGCTCCTAGAAAAAAATCGTGAAAAATTTAAACAGATCATAACCCTATGATTGTACTTTGAGCTCAATTATCTCGGTTCCTGTGAGAGACATCAACAACCTGTCAACTGATAAAATATTTATCATAATATTTCAAACATTTTTATAGTTAACAAAATTTTGATATCTCTCATAAGAACCGAGATAATTGAGCTCAAATGCACGTATAGGGTGGGCTTCTATTAGAGGAGGACCTACGGTAGTAGCACTTTGAGCTCAATTGTATCACTTTCAGTGAAATATATCAAAAATCTGTCAACTGATGAAATGTTGGTGATATTATGACAAACATTTCATCAGTTAACACACTTTTGATATCTCTCAAAGGAACCGAGATAATTAAGCTCACAGTTACGGTATCAGCTAAACTCGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTACTGTAGCTGTGGCTCCTAGAAAAAAATCGTGAAAAATTTAAACAGAKCATAACCCTATGATTGTACTTTGAGCTCAATTATCTCGGTTCCTGTGAGAGACATCAACAACCTGTCAACTGATAAAATATTTATCATAATATTTCAAACATTTTTATAGTTAACAAAATTTTGATATCTCTCATAAGAACCGAGATAATTGAGCTCAAATGCACGTATAGGGTGGGCTTCTATTAGAGGAGGACCTACGGTAGTAGCACTTTGAGCTCAATTGTATCACTTTCAGTGAAATATATCAAAAATCTGTCAACTGATGAAATGTTGGTGATATTATGACAAACATTTCATCAGTTAACACACTTTTGATATCTCTCAAAGGAACCGAGATAATTAAGCTCACAGTTACGGTATCAGCTAAACTCGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6652</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>704396</contig_pos>
        <strand>+</strand>
        <context>TTCTAGAGAG[A/G]ATTCTAGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGAAGGGATTGAATTCAATTTAGGAATAAACAAGGAGTCTTCTAGAGAG</left_flank>
        <right_flank>ATTCTAGAAAGTTGATGAAGTAGAAAAAGGGGATACCGTAGTTATGGCTA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTGACAACAACAATCTACCGTATCCTTGATGACGTGGATCCTGTCCTTGATCTATTCCCAACCACTTCCACACACCCCATTCTCTCGATAATTGACCACCCAAAACTCGCCTCTTCATTCATCCATACAACATGTACACAGAAATACACAATTTGATTCTTTTTCTCTCTCCGTTTTTTGTGTACATTTTGTCAGGAAAACTACTGGGGGTGTCTATAAAGAGAAGATACTTCCCTACTTTTTCTTCATTCCAATATTTTCACAAAATTAAGACCACAATCGTATTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGAACGAAAAAGAGATCGTGGGATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATTATAATGTTTTCCCCCTTTCACCACGATGATTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAATTTAGGAATAAACAAGGAGTCTTCTAGAGAGAATTCTAGAAAGTTGATGAAGTAGAAAAAGGGGATACCGTAGTTATGGCTAGAACTGACTAGAAGATACAAAGTGAAGTGGTCTAAGAAGTACTAGAAACTGTCTAGAACCTCATCTTTTGAACAGAAGCATTTTTTGGAAGTGTGGACTAGAATCTAGCCAATCGTTATTGCCATAACATTGATTCGGGCTGCCTTTGACTTTCAATTTGCGAAATCTGGGTAAATTTAAAAAGAAGATAGATTTTCACAAGCTATGAAAAATTAACAACAACCAATAATGAAATTGGCATTAGAAAATTTGAGCAGAGACCATTTCGGAATATAAATTGGGATAACGCAGAACCTGTAATAGAATGGCTTCCACACTGTCAGCTTTGAGTTCAATTATCTCAATTCCTATGCAAGCTATCAAAATGTGTTAATTTACAAATAACTTCCGATACATATTGTGATAAACAGATTAGCAGCTGACAACATTGGTGTATCTTTGACCGGAAAT</canonical>
            <polymorphic>CGTGACAACAACAATCTACCGTATCCTTGATGACGTGGATCCTGTCCTTGATCTATTCCCAACCACTTCCACACACCCCATTCTCTCGATAATTGACCACCCAAAACTCGCCTCTTCATTCATCCATACAACATGTACACAGAAATACACAATTTGATTCTTTTTCTCTCTCCGTTTTTTGTGTACATTTTGTCAGGAAAACTACTGGGGGTGTCTATAAAGAGAAGATACTTCCCTACTTTTTCTTCATTCCAATATTTTCACAAAATTAAGACCACAATCGTATTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGAACGAAAAAGAGATCGTGGGATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATTATAATGTTTTCCCCCTTTCACCACGATGATTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAATTTAGGAATAAACAAGGAGTCTTCTAGAGAGRATTCTAGAAAGTTGATGAAGTAGAAAAAGGGGATACCGTAGTTATGGCTAGAACTGACTAGAAGATACAAAGTGAAGTGGTCTAAGAAGTACTAGAAACTGTCTAGAACCTCATCTTTTGAACAGAAGCATTTTTTGGAAGTGTGGACTAGAATCTAGCCAATCGTTATTGCCATAACATTGATTCGGGCTGCCTTTGACTTTCAATTTGCGAAATCTGGGTAAATTTAAAAAGAAGATAGATTTTCACAAGCTATGAAAAATTAACAACAACCAATAATGAAATTGGCATTAGAAAATTTGAGCAGAGACCATTTCGGAATATAAATTGGGATAACGCAGAACCTGTAATAGAATGGCTTCCACACTGTCAGCTTTGAGTTCAATTATCTCAATTCCTATGCAAGCTATCAAAATGTGTTAATTTACAAATAACTTCCGATACATATTGTGATAAACAGATTAGCAGCTGACAACATTGGTGTATCTTTGACCGGAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>461 224 204 73 38</canonical_bands>
                <polymorphic_bands>461 262 204 73</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>501 461 38</canonical_bands>
                <polymorphic_bands>539 461</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>205 119 116 90 79 76 60 58 37 33 29 29 22 19 14 9 5</canonical_bands>
                <polymorphic_bands>238 119 116 90 79 76 60 58 37 29 29 22 19 14 9 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGGAAGAAGACACATCAATTA</pcr_primer_p1>
		<pcr_primer_p2>AAAGATGAGGTTCTAGACAGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAGGAAGAAGACACATCAATTATAATGTTTTCCCCCTTTCACCACGATGATTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAATTTAGGAATAAACAAGGAGTCTTCTAGAGAGAATTCTAGAAAGTTGATGAAGTAGAAAAAGGGGATACCGTAGTTATGGCTAGAACTGACTAGAAGATACAAAGTGAAGTGGTCTAAGAAGTACTAGAAACTGTCTAGAACCTCATCTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAGGAAGAAGACACATCAATTATAATGTTTTCCCCCTTTCACCACGATGATTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAATTTAGGAATAAACAAGGAGTCTTCTAGAGAGRATTCTAGAAAGTTGATGAAGTAGAAAAAGGGGATACCGTAGTTATGGCTAGAACTGACTAGAAGATACAAAGTGAAGTGGTCTAAGAAGTACTAGAAACTGTCTAGAACCTCATCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6653</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>704384</contig_pos>
        <strand>+</strand>
        <context>AAACAAGGAG[A/T]CTTCTAGAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCGTAAACATTGGGAAGGGATTGAATTCAATTTAGGAATAAACAAGGAG</left_flank>
        <right_flank>CTTCTAGAGAGAATTCTAGAAAGTTGATGAAGTAGAAAAAGGGGATACCG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACCTCCAAATCGTGACAACAACAATCTACCGTATCCTTGATGACGTGGATCCTGTCCTTGATCTATTCCCAACCACTTCCACACACCCCATTCTCTCGATAATTGACCACCCAAAACTCGCCTCTTCATTCATCCATACAACATGTACACAGAAATACACAATTTGATTCTTTTTCTCTCTCCGTTTTTTGTGTACATTTTGTCAGGAAAACTACTGGGGGTGTCTATAAAGAGAAGATACTTCCCTACTTTTTCTTCATTCCAATATTTTCACAAAATTAAGACCACAATCGTATTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGAACGAAAAAGAGATCGTGGGATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATTATAATGTTTTCCCCCTTTCACCACGATGATTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAATTTAGGAATAAACAAGGAGTCTTCTAGAGAGAATTCTAGAAAGTTGATGAAGTAGAAAAAGGGGATACCGTAGTTATGGCTAGAACTGACTAGAAGATACAAAGTGAAGTGGTCTAAGAAGTACTAGAAACTGTCTAGAACCTCATCTTTTGAACAGAAGCATTTTTTGGAAGTGTGGACTAGAATCTAGCCAATCGTTATTGCCATAACATTGATTCGGGCTGCCTTTGACTTTCAATTTGCGAAATCTGGGTAAATTTAAAAAGAAGATAGATTTTCACAAGCTATGAAAAATTAACAACAACCAATAATGAAATTGGCATTAGAAAATTTGAGCAGAGACCATTTCGGAATATAAATTGGGATAACGCAGAACCTGTAATAGAATGGCTTCCACACTGTCAGCTTTGAGTTCAATTATCTCAATTCCTATGCAAGCTATCAAAATGTGTTAATTTACAAATAACTTCCGATACATATTGTGATAAACAGATTAGCAGCTGACAACATTGGTGTATCT</canonical>
            <polymorphic>TAACCTCCAAATCGTGACAACAACAATCTACCGTATCCTTGATGACGTGGATCCTGTCCTTGATCTATTCCCAACCACTTCCACACACCCCATTCTCTCGATAATTGACCACCCAAAACTCGCCTCTTCATTCATCCATACAACATGTACACAGAAATACACAATTTGATTCTTTTTCTCTCTCCGTTTTTTGTGTACATTTTGTCAGGAAAACTACTGGGGGTGTCTATAAAGAGAAGATACTTCCCTACTTTTTCTTCATTCCAATATTTTCACAAAATTAAGACCACAATCGTATTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGAACGAAAAAGAGATCGTGGGATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATTATAATGTTTTCCCCCTTTCACCACGATGATTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAATTTAGGAATAAACAAGGAGWCTTCTAGAGAGAATTCTAGAAAGTTGATGAAGTAGAAAAAGGGGATACCGTAGTTATGGCTAGAACTGACTAGAAGATACAAAGTGAAGTGGTCTAAGAAGTACTAGAAACTGTCTAGAACCTCATCTTTTGAACAGAAGCATTTTTTGGAAGTGTGGACTAGAATCTAGCCAATCGTTATTGCCATAACATTGATTCGGGCTGCCTTTGACTTTCAATTTGCGAAATCTGGGTAAATTTAAAAAGAAGATAGATTTTCACAAGCTATGAAAAATTAACAACAACCAATAATGAAATTGGCATTAGAAAATTTGAGCAGAGACCATTTCGGAATATAAATTGGGATAACGCAGAACCTGTAATAGAATGGCTTCCACACTGTCAGCTTTGAGTTCAATTATCTCAATTCCTATGCAAGCTATCAAAATGTGTTAATTTACAAATAACTTCCGATACATATTGTGATAAACAGATTAGCAGCTGACAACATTGGTGTATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>329 306 168 166 31</canonical_bands>
                <polymorphic_bands>495 306 168 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGGAAGAAGACACATCAATTA</pcr_primer_p1>
		<pcr_primer_p2>AAAGATGAGGTTCTAGACAGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAGGAAGAAGACACATCAATTATAATGTTTTCCCCCTTTCACCACGATGATTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAATTTAGGAATAAACAAGGAGTCTTCTAGAGAGAATTCTAGAAAGTTGATGAAGTAGAAAAAGGGGATACCGTAGTTATGGCTAGAACTGACTAGAAGATACAAAGTGAAGTGGTCTAAGAAGTACTAGAAACTGTCTAGAACCTCATCTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAGGAAGAAGACACATCAATTATAATGTTTTCCCCCTTTCACCACGATGATTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAATTTAGGAATAAACAAGGAGWCTTCTAGAGAGAATTCTAGAAAGTTGATGAAGTAGAAAAAGGGGATACCGTAGTTATGGCTAGAACTGACTAGAAGATACAAAGTGAAGTGGTCTAAGAAGTACTAGAAACTGTCTAGAACCTCATCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6654</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>704365</contig_pos>
        <strand></strand>
        <context>TTGAATTCAA[T/G]KTAGGAATAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAA</left_flank>
        <right_flank>TTAGGAATAAACAAGGAGTCTTCTAGAGAGAATTCTAGAAAGTTGATGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGCTTATAGAGCAAAGTTTAACCTCCAAATCGTGACAACAACAATCTACCGTATCCTTGATGACGTGGATCCTGTCCTTGATCTATTCCCAACCACTTCCACACACCCCATTCTCTCGATAATTGACCACCCAAAACTCGCCTCTTCATTCATCCATACAACATGTACACAGAAATACACAATTTGATTCTTTTTCTCTCTCCGTTTTTTGTGTACATTTTGTCAGGAAAACTACTGGGGGTGTCTATAAAGAGAAGATACTTCCCTACTTTTTCTTCATTCCAATATTTTCACAAAATTAAGACCACAATCGTATTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGAACGAAAAAGAGATCGTGGGATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATTATAATGTTTTCCCCCTTTCACCACGATGATTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAATTTAGGAATAAACAAGGAGTCTTCTAGAGAGAATTCTAGAAAGTTGATGAAGTAGAAAAAGGGGATACCGTAGTTATGGCTAGAACTGACTAGAAGATACAAAGTGAAGTGGTCTAAGAAGTACTAGAAACTGTCTAGAACCTCATCTTTTGAACAGAAGCATTTTTTGGAAGTGTGGACTAGAATCTAGCCAATCGTTATTGCCATAACATTGATTCGGGCTGCCTTTGACTTTCAATTTGCGAAATCTGGGTAAATTTAAAAAGAAGATAGATTTTCACAAGCTATGAAAAATTAACAACAACCAATAATGAAATTGGCATTAGAAAATTTGAGCAGAGACCATTTCGGAATATAAATTGGGATAACGCAGAACCTGTAATAGAATGGCTTCCACACTGTCAGCTTTGAGTTCAATTATCTCAATTCCTATGCAAGCTATCAAAATGTGTTAATTTACAAATAACTTCCGATACATATTGTGATAAACAGATTAGCAGC</canonical>
            <polymorphic>CGGCTTATAGAGCAAAGTTTAACCTCCAAATCGTGACAACAACAATCTACCGTATCCTTGATGACGTGGATCCTGTCCTTGATCTATTCCCAACCACTTCCACACACCCCATTCTCTCGATAATTGACCACCCAAAACTCGCCTCTTCATTCATCCATACAACATGTACACAGAAATACACAATTTGATTCTTTTTCTCTCTCCGTTTTTTGTGTACATTTTGTCAGGAAAACTACTGGGGGTGTCTATAAAGAGAAGATACTTCCCTACTTTTTCTTCATTCCAATATTTTCACAAAATTAAGACCACAATCGTATTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGAACGAAAAAGAGATCGTGGGATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATTATAATGTTTTCCCCCTTTCACCACGATGATTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAAKTTAGGAATAAACAAGGAGTCTTCTAGAGAGAATTCTAGAAAGTTGATGAAGTAGAAAAAGGGGATACCGTAGTTATGGCTAGAACTGACTAGAAGATACAAAGTGAAGTGGTCTAAGAAGTACTAGAAACTGTCTAGAACCTCATCTTTTGAACAGAAGCATTTTTTGGAAGTGTGGACTAGAATCTAGCCAATCGTTATTGCCATAACATTGATTCGGGCTGCCTTTGACTTTCAATTTGCGAAATCTGGGTAAATTTAAAAAGAAGATAGATTTTCACAAGCTATGAAAAATTAACAACAACCAATAATGAAATTGGCATTAGAAAATTTGAGCAGAGACCATTTCGGAATATAAATTGGGATAACGCAGAACCTGTAATAGAATGGCTTCCACACTGTCAGCTTTGAGTTCAATTATCTCAATTCCTATGCAAGCTATCAAAATGTGTTAATTTACAAATAACTTCCGATACATATTGTGATAAACAGATTAGCAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>205 121 119 116 76 60 58 48 37 33 29 29 22 19 14 9 5</canonical_bands>
                <polymorphic_bands>205 121 119 116 76 60 58 48 38 37 29 29 22 19 14 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATTTATACGTGAGAGGAGGAG</pcr_primer_p1>
		<pcr_primer_p2>GTATCCCCTTTTTCTACTTCATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGAACGAAAAAGAGATCGTGGGATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATTATAATGTTTTCCCCCTTTCACCACGATGATTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAATTTAGGAATAAACAAGGAGTCTTCTAGAGAGAATTCTAGAAAGTTGATGAAGTAGAAAAAGGGGATAC</canonical_amplicon>
		<polymorphic_amplicon>TTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGAACGAAAAAGAGATCGTGGGATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATTATAATGTTTTCCCCCTTTCACCACGATGATTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAAKTTAGGAATAAACAAGGAGTCTTCTAGAGAGAATTCTAGAAAGTTGATGAAGTAGAAAAAGGGGATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6655</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>704240</contig_pos>
        <strand>+</strand>
        <context>GAGATCGTGG[C/G]ATTGAATGGC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACGTGAGAGGAGGAGGTTGTGCGAAAAACCGAACGAAAAAGAGATCGTGG</left_flank>
        <right_flank>ATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATTATAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGCCCCTCGAGGAGTCAAACTTTTGGGCCCACCGTTTGCGGTGCCGCGTTGCTACCATCTGAGCTACGGTAGGAGAAGTAGCGCCACCGCCTGAACACGGACAGAGAGCCTCAAAATATGACTCGGCTTATAGAGCAAAGTTTAACCTCCAAATCGTGACAACAACAATCTACCGTATCCTTGATGACGTGGATCCTGTCCTTGATCTATTCCCAACCACTTCCACACACCCCATTCTCTCGATAATTGACCACCCAAAACTCGCCTCTTCATTCATCCATACAACATGTACACAGAAATACACAATTTGATTCTTTTTCTCTCTCCGTTTTTTGTGTACATTTTGTCAGGAAAACTACTGGGGGTGTCTATAAAGAGAAGATACTTCCCTACTTTTTCTTCATTCCAATATTTTCACAAAATTAAGACCACAATCGTATTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGAACGAAAAAGAGATCGTGGGATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATTATAATGTTTTCCCCCTTTCACCACGATGATTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAATTTAGGAATAAACAAGGAGTCTTCTAGAGAGAATTCTAGAAAGTTGATGAAGTAGAAAAAGGGGATACCGTAGTTATGGCTAGAACTGACTAGAAGATACAAAGTGAAGTGGTCTAAGAAGTACTAGAAACTGTCTAGAACCTCATCTTTTGAACAGAAGCATTTTTTGGAAGTGTGGACTAGAATCTAGCCAATCGTTATTGCCATAACATTGATTCGGGCTGCCTTTGACTTTCAATTTGCGAAATCTGGGTAAATTTAAAAAGAAGATAGATTTTCACAAGCTATGAAAAATTAACAACAACCAATAATGAAATTGGCATTAGAAAATTTGAGCAGAGACCATTTCGGAATATAAATTGGGATAACGCAGAAC</canonical>
            <polymorphic>ATAGCCCCTCGAGGAGTCAAACTTTTGGGCCCACCGTTTGCGGTGCCGCGTTGCTACCATCTGAGCTACGGTAGGAGAAGTAGCGCCACCGCCTGAACACGGACAGAGAGCCTCAAAATATGACTCGGCTTATAGAGCAAAGTTTAACCTCCAAATCGTGACAACAACAATCTACCGTATCCTTGATGACGTGGATCCTGTCCTTGATCTATTCCCAACCACTTCCACACACCCCATTCTCTCGATAATTGACCACCCAAAACTCGCCTCTTCATTCATCCATACAACATGTACACAGAAATACACAATTTGATTCTTTTTCTCTCTCCGTTTTTTGTGTACATTTTGTCAGGAAAACTACTGGGGGTGTCTATAAAGAGAAGATACTTCCCTACTTTTTCTTCATTCCAATATTTTCACAAAATTAAGACCACAATCGTATTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGAACGAAAAAGAGATCGTGGSATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATTATAATGTTTTCCCCCTTTCACCACGATGATTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAATTTAGGAATAAACAAGGAGTCTTCTAGAGAGAATTCTAGAAAGTTGATGAAGTAGAAAAAGGGGATACCGTAGTTATGGCTAGAACTGACTAGAAGATACAAAGTGAAGTGGTCTAAGAAGTACTAGAAACTGTCTAGAACCTCATCTTTTGAACAGAAGCATTTTTTGGAAGTGTGGACTAGAATCTAGCCAATCGTTATTGCCATAACATTGATTCGGGCTGCCTTTGACTTTCAATTTGCGAAATCTGGGTAAATTTAAAAAGAAGATAGATTTTCACAAGCTATGAAAAATTAACAACAACCAATAATGAAATTGGCATTAGAAAATTTGAGCAGAGACCATTTCGGAATATAAATTGGGATAACGCAGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTTATACGTGAGAGGAGGAG</pcr_primer_p1>
		<pcr_primer_p2>GTATCCCCTTTTTCTACTTCATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGAACGAAAAAGAGATCGTGGGATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATTATAATGTTTTCCCCCTTTCACCACGATGATTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAATTTAGGAATAAACAAGGAGTCTTCTAGAGAGAATTCTAGAAAGTTGATGAAGTAGAAAAAGGGGATAC</canonical_amplicon>
		<polymorphic_amplicon>TTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGAACGAAAAAGAGATCGTGGSATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATTATAATGTTTTCCCCCTTTCACCACGATGATTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAATTTAGGAATAAACAAGGAGTCTTCTAGAGAGAATTCTAGAAAGTTGATGAAGTAGAAAAAGGGGATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6656</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>704227</contig_pos>
        <strand>+</strand>
        <context>ACCGARCGAA[A/G]AAGAGATCGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGTATTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGAACGAA</left_flank>
        <right_flank>AAGAGATCGTGGGATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTCTGTTCATAATAGCCCCTCGAGGAGTCAAACTTTTGGGCCCACCGTTTGCGGTGCCGCGTTGCTACCATCTGAGCTACGGTAGGAGAAGTAGCGCCACCGCCTGAACACGGACAGAGAGCCTCAAAATATGACTCGGCTTATAGAGCAAAGTTTAACCTCCAAATCGTGACAACAACAATCTACCGTATCCTTGATGACGTGGATCCTGTCCTTGATCTATTCCCAACCACTTCCACACACCCCATTCTCTCGATAATTGACCACCCAAAACTCGCCTCTTCATTCATCCATACAACATGTACACAGAAATACACAATTTGATTCTTTTTCTCTCTCCGTTTTTTGTGTACATTTTGTCAGGAAAACTACTGGGGGTGTCTATAAAGAGAAGATACTTCCCTACTTTTTCTTCATTCCAATATTTTCACAAAATTAAGACCACAATCGTATTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGAACGAAAAAGAGATCGTGGGATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATTATAATGTTTTCCCCCTTTCACCACGATGATTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAATTTAGGAATAAACAAGGAGTCTTCTAGAGAGAATTCTAGAAAGTTGATGAAGTAGAAAAAGGGGATACCGTAGTTATGGCTAGAACTGACTAGAAGATACAAAGTGAAGTGGTCTAAGAAGTACTAGAAACTGTCTAGAACCTCATCTTTTGAACAGAAGCATTTTTTGGAAGTGTGGACTAGAATCTAGCCAATCGTTATTGCCATAACATTGATTCGGGCTGCCTTTGACTTTCAATTTGCGAAATCTGGGTAAATTTAAAAAGAAGATAGATTTTCACAAGCTATGAAAAATTAACAACAACCAATAATGAAATTGGCATTAGAAAATTTGAGCAGAGACCATTTCGGAATATAAATTGG</canonical>
            <polymorphic>AACTCTGTTCATAATAGCCCCTCGAGGAGTCAAACTTTTGGGCCCACCGTTTGCGGTGCCGCGTTGCTACCATCTGAGCTACGGTAGGAGAAGTAGCGCCACCGCCTGAACACGGACAGAGAGCCTCAAAATATGACTCGGCTTATAGAGCAAAGTTTAACCTCCAAATCGTGACAACAACAATCTACCGTATCCTTGATGACGTGGATCCTGTCCTTGATCTATTCCCAACCACTTCCACACACCCCATTCTCTCGATAATTGACCACCCAAAACTCGCCTCTTCATTCATCCATACAACATGTACACAGAAATACACAATTTGATTCTTTTTCTCTCTCCGTTTTTTGTGTACATTTTGTCAGGAAAACTACTGGGGGTGTCTATAAAGAGAAGATACTTCCCTACTTTTTCTTCATTCCAATATTTTCACAAAATTAAGACCACAATCGTATTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGAACGAARAAGAGATCGTGGGATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATTATAATGTTTTCCCCCTTTCACCACGATGATTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAATTTAGGAATAAACAAGGAGTCTTCTAGAGAGAATTCTAGAAAGTTGATGAAGTAGAAAAAGGGGATACCGTAGTTATGGCTAGAACTGACTAGAAGATACAAAGTGAAGTGGTCTAAGAAGTACTAGAAACTGTCTAGAACCTCATCTTTTGAACAGAAGCATTTTTTGGAAGTGTGGACTAGAATCTAGCCAATCGTTATTGCCATAACATTGATTCGGGCTGCCTTTGACTTTCAATTTGCGAAATCTGGGTAAATTTAAAAAGAAGATAGATTTTCACAAGCTATGAAAAATTAACAACAACCAATAATGAAATTGGCATTAGAAAATTTGAGCAGAGACCATTTCGGAATATAAATTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAATTTGATTCTTTTTCTCTC</pcr_primer_p1>
		<pcr_primer_p2>AATTGATGTGTCTTCTTCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CACAATTTGATTCTTTTTCTCTCTCCGTTTTTTGTGTACATTTTGTCAGGAAAACTACTGGGGGTGTCTATAAAGAGAAGATACTTCCCTACTTTTTCTTCATTCCAATATTTTCACAAAATTAAGACCACAATCGTATTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGAACGAAAAAGAGATCGTGGGATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATT</canonical_amplicon>
		<polymorphic_amplicon>CACAATTTGATTCTTTTTCTCTCTCCGTTTTTTGTGTACATTTTGTCAGGAAAACTACTGGGGGTGTCTATAAAGAGAAGATACTTCCCTACTTTTTCTTCATTCCAATATTTTCACAAAATTAAGACCACAATCGTATTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGAACGAARAAGAGATCGTGGGATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6657</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>704222</contig_pos>
        <strand>+</strand>
        <context>GAAAAACCGA[A/G]CGAARAAGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACAATCGTATTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGA</left_flank>
        <right_flank>CGAAAAAGAGATCGTGGGATTGAATGGCAACACCCGCGCGAAAAGGAAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGAAACTCTGTTCATAATAGCCCCTCGAGGAGTCAAACTTTTGGGCCCACCGTTTGCGGTGCCGCGTTGCTACCATCTGAGCTACGGTAGGAGAAGTAGCGCCACCGCCTGAACACGGACAGAGAGCCTCAAAATATGACTCGGCTTATAGAGCAAAGTTTAACCTCCAAATCGTGACAACAACAATCTACCGTATCCTTGATGACGTGGATCCTGTCCTTGATCTATTCCCAACCACTTCCACACACCCCATTCTCTCGATAATTGACCACCCAAAACTCGCCTCTTCATTCATCCATACAACATGTACACAGAAATACACAATTTGATTCTTTTTCTCTCTCCGTTTTTTGTGTACATTTTGTCAGGAAAACTACTGGGGGTGTCTATAAAGAGAAGATACTTCCCTACTTTTTCTTCATTCCAATATTTTCACAAAATTAAGACCACAATCGTATTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGAACGAAAAAGAGATCGTGGGATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATTATAATGTTTTCCCCCTTTCACCACGATGATTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAATTTAGGAATAAACAAGGAGTCTTCTAGAGAGAATTCTAGAAAGTTGATGAAGTAGAAAAAGGGGATACCGTAGTTATGGCTAGAACTGACTAGAAGATACAAAGTGAAGTGGTCTAAGAAGTACTAGAAACTGTCTAGAACCTCATCTTTTGAACAGAAGCATTTTTTGGAAGTGTGGACTAGAATCTAGCCAATCGTTATTGCCATAACATTGATTCGGGCTGCCTTTGACTTTCAATTTGCGAAATCTGGGTAAATTTAAAAAGAAGATAGATTTTCACAAGCTATGAAAAATTAACAACAACCAATAATGAAATTGGCATTAGAAAATTTGAGCAGAGACCATTTCGGAATATAA</canonical>
            <polymorphic>CTTGAAACTCTGTTCATAATAGCCCCTCGAGGAGTCAAACTTTTGGGCCCACCGTTTGCGGTGCCGCGTTGCTACCATCTGAGCTACGGTAGGAGAAGTAGCGCCACCGCCTGAACACGGACAGAGAGCCTCAAAATATGACTCGGCTTATAGAGCAAAGTTTAACCTCCAAATCGTGACAACAACAATCTACCGTATCCTTGATGACGTGGATCCTGTCCTTGATCTATTCCCAACCACTTCCACACACCCCATTCTCTCGATAATTGACCACCCAAAACTCGCCTCTTCATTCATCCATACAACATGTACACAGAAATACACAATTTGATTCTTTTTCTCTCTCCGTTTTTTGTGTACATTTTGTCAGGAAAACTACTGGGGGTGTCTATAAAGAGAAGATACTTCCCTACTTTTTCTTCATTCCAATATTTTCACAAAATTAAGACCACAATCGTATTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGARCGAAAAAGAGATCGTGGGATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATTATAATGTTTTCCCCCTTTCACCACGATGATTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAATTTAGGAATAAACAAGGAGTCTTCTAGAGAGAATTCTAGAAAGTTGATGAAGTAGAAAAAGGGGATACCGTAGTTATGGCTAGAACTGACTAGAAGATACAAAGTGAAGTGGTCTAAGAAGTACTAGAAACTGTCTAGAACCTCATCTTTTGAACAGAAGCATTTTTTGGAAGTGTGGACTAGAATCTAGCCAATCGTTATTGCCATAACATTGATTCGGGCTGCCTTTGACTTTCAATTTGCGAAATCTGGGTAAATTTAAAAAGAAGATAGATTTTCACAAGCTATGAAAAATTAACAACAACCAATAATGAAATTGGCATTAGAAAATTTGAGCAGAGACCATTTCGGAATATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAATTTGATTCTTTTTCTCTC</pcr_primer_p1>
		<pcr_primer_p2>AATTGATGTGTCTTCTTCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CACAATTTGATTCTTTTTCTCTCTCCGTTTTTTGTGTACATTTTGTCAGGAAAACTACTGGGGGTGTCTATAAAGAGAAGATACTTCCCTACTTTTTCTTCATTCCAATATTTTCACAAAATTAAGACCACAATCGTATTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGAACGAAAAAGAGATCGTGGGATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATT</canonical_amplicon>
		<polymorphic_amplicon>CACAATTTGATTCTTTTTCTCTCTCCGTTTTTTGTGTACATTTTGTCAGGAAAACTACTGGGGGTGTCTATAAAGAGAAGATACTTCCCTACTTTTTCTTCATTCCAATATTTTCACAAAATTAAGACCACAATCGTATTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGARCGAAAAAGAGATCGTGGGATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6658</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>704089</contig_pos>
        <strand>+</strand>
        <context>GTACATTTTG[C/T]CAGGAAAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATACACAATTTGATTCTTTTTCTCTCTCCGTTTTTTGTGTACATTTTG</left_flank>
        <right_flank>CAGGAAAACTACTGGGGGTGTCTATAAAGAGAAGATACTTCCCTACTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCATCTCATTTGGATGGATTTCTACGAAAAATTGTCTACTGAAACATTGAAGCCCTATTTTTTTTCTATTAACAATCTACAAAGATCTGTTTCAGAAAAGTTAAGAGAGGGTAACATGAGAAAATAAGTTGCTTGAAACTCTGTTCATAATAGCCCCTCGAGGAGTCAAACTTTTGGGCCCACCGTTTGCGGTGCCGCGTTGCTACCATCTGAGCTACGGTAGGAGAAGTAGCGCCACCGCCTGAACACGGACAGAGAGCCTCAAAATATGACTCGGCTTATAGAGCAAAGTTTAACCTCCAAATCGTGACAACAACAATCTACCGTATCCTTGATGACGTGGATCCTGTCCTTGATCTATTCCCAACCACTTCCACACACCCCATTCTCTCGATAATTGACCACCCAAAACTCGCCTCTTCATTCATCCATACAACATGTACACAGAAATACACAATTTGATTCTTTTTCTCTCTCCGTTTTTTGTGTACATTTTGTCAGGAAAACTACTGGGGGTGTCTATAAAGAGAAGATACTTCCCTACTTTTTCTTCATTCCAATATTTTCACAAAATTAAGACCACAATCGTATTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGAACGAAAAAGAGATCGTGGGATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATTATAATGTTTTCCCCCTTTCACCACGATGATTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAATTTAGGAATAAACAAGGAGTCTTCTAGAGAGAATTCTAGAAAGTTGATGAAGTAGAAAAAGGGGATACCGTAGTTATGGCTAGAACTGACTAGAAGATACAAAGTGAAGTGGTCTAAGAAGTACTAGAAACTGTCTAGAACCTCATCTTTTGAACAGAAGCATTTTTTGGAAGTGTGGACTAGAATCTAGCCAATCGTTATTGCCATAACATTGATTCGGGCTGC</canonical>
            <polymorphic>ATTCATCTCATTTGGATGGATTTCTACGAAAAATTGTCTACTGAAACATTGAAGCCCTATTTTTTTTCTATTAACAATCTACAAAGATCTGTTTCAGAAAAGTTAAGAGAGGGTAACATGAGAAAATAAGTTGCTTGAAACTCTGTTCATAATAGCCCCTCGAGGAGTCAAACTTTTGGGCCCACCGTTTGCGGTGCCGCGTTGCTACCATCTGAGCTACGGTAGGAGAAGTAGCGCCACCGCCTGAACACGGACAGAGAGCCTCAAAATATGACTCGGCTTATAGAGCAAAGTTTAACCTCCAAATCGTGACAACAACAATCTACCGTATCCTTGATGACGTGGATCCTGTCCTTGATCTATTCCCAACCACTTCCACACACCCCATTCTCTCGATAATTGACCACCCAAAACTCGCCTCTTCATTCATCCATACAACATGTACACAGAAATACACAATTTGATTCTTTTTCTCTCTCCGTTTTTTGTGTACATTTTGYCAGGAAAACTACTGGGGGTGTCTATAAAGAGAAGATACTTCCCTACTTTTTCTTCATTCCAATATTTTCACAAAATTAAGACCACAATCGTATTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGAACGAAAAAGAGATCGTGGGATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATTATAATGTTTTCCCCCTTTCACCACGATGATTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAATTTAGGAATAAACAAGGAGTCTTCTAGAGAGAATTCTAGAAAGTTGATGAAGTAGAAAAAGGGGATACCGTAGTTATGGCTAGAACTGACTAGAAGATACAAAGTGAAGTGGTCTAAGAAGTACTAGAAACTGTCTAGAACCTCATCTTTTGAACAGAAGCATTTTTTGGAAGTGTGGACTAGAATCTAGCCAATCGTTATTGCCATAACATTGATTCGGGCTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>308 298 109 99 90 84 12</canonical_bands>
                <polymorphic_bands>407 308 99 90 84 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGACAACAACAATCTACCGTAT</pcr_primer_p1>
		<pcr_primer_p2>GAATGAAGAAAAAGTAGGGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTGACAACAACAATCTACCGTATCCTTGATGACGTGGATCCTGTCCTTGATCTATTCCCAACCACTTCCACACACCCCATTCTCTCGATAATTGACCACCCAAAACTCGCCTCTTCATTCATCCATACAACATGTACACAGAAATACACAATTTGATTCTTTTTCTCTCTCCGTTTTTTGTGTACATTTTGTCAGGAAAACTACTGGGGGTGTCTATAAAGAGAAGATACTTCCCTACTTTTTCTTCATTC</canonical_amplicon>
		<polymorphic_amplicon>GTGACAACAACAATCTACCGTATCCTTGATGACGTGGATCCTGTCCTTGATCTATTCCCAACCACTTCCACACACCCCATTCTCTCGATAATTGACCACCCAAAACTCGCCTCTTCATTCATCCATACAACATGTACACAGAAATACACAATTTGATTCTTTTTCTCTCTCCGTTTTTTGTGTACATTTTGYCAGGAAAACTACTGGGGGTGTCTATAAAGAGAAGATACTTCCCTACTTTTTCTTCATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6659</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>727441</contig_pos>
        <strand>+</strand>
        <context>CATCGTTGAT[A/C]TGTGTGTCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAATTTGTTCATTATCAAAAAATTTCAGTTCAAATGATATCATCGTTGAT</left_flank>
        <right_flank>TGTGTGTCAGAAAATTTGCAACGAGAAAAAGTGATCCAATCGAAGTAGCT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTAGAATAATTTCAAAGTCCTTCCAAAAGAGATCAAAAGCTTCCTGACCACATAATGAATACAATTTTTCTTGCGACACAGATTCGGAATACATGAATTCCAAAACTACTTGTTCAGGATTCACATTAAGTTGAATCTCAGTTATTGAAGACGCCGGAATAGAATCGTCGATAAAGTTTCGAATATCGTGGCAAGTTTTACGGAGGATCATTCTGAAATTTGTTTTTTTTTTGTTGTTGAAATTTTTTGATTAAAAAGGCTTACAATGATCGATAATCCAGGTTTTCTATTATAGCGGACAGAACAATGTCGGGCATTTTATTGAGAGATGTCATCTGTATAGAAAATTAGGTTTTGAAAATTTAAAAATTAAACATTGCGAAAAAGATATCTGATAGTGAGAAAACAATTAATTCCAAAAATAGACACAAGATCTAAAAAAAAAAAGAATTTGTTCATTATCAAAAAATTTCAGTTCAAATGATATCATCGTTGATCTGTGTGTCAGAAAATTTGCAACGAGAAAAAGTGATCCAATCGAAGTAGCTGGCTCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAAACCTCATCTGGATAGGTTCCTTCGAATAACTGCTCAAACCAATGTTTCAATTCTCTGCCTTTGTAATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGTTGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATCGTATTT</canonical>
            <polymorphic>TTTTAGAATAATTTCAAAGTCCTTCCAAAAGAGATCAAAAGCTTCCTGACCACATAATGAATACAATTTTTCTTGCGACACAGATTCGGAATACATGAATTCCAAAACTACTTGTTCAGGATTCACATTAAGTTGAATCTCAGTTATTGAAGACGCCGGAATAGAATCGTCGATAAAGTTTCGAATATCGTGGCAAGTTTTACGGAGGATCATTCTGAAATTTGTTTTTTTTTTGTTGTTGAAATTTTTTGATTAAAAAGGCTTACAATGATCGATAATCCAGGTTTTCTATTATAGCGGACAGAACAATGTCGGGCATTTTATTGAGAGATGTCATCTGTATAGAAAATTAGGTTTTGAAAATTTAAAAATTAAACATTGCGAAAAAGATATCTGATAGTGAGAAAACAATTAATTCCAAAAATAGACACAAGATCTAAAAAAAAAAAGAATTTGTTCATTATCAAAAAATTTCAGTTCAAATGATATCATCGTTGATMTGTGTGTCAGAAAATTTGCAACGAGAAAAAGTGATCCAATCGAAGTAGCTGGCTCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAAACCTCATCTGGATAGGTTCCTTCGAATAACTGCTCAAACCAATGTTTCAATTCTCTGCCTTTGTAATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGTTGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATCGTATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>278 175 164 119 71 63 62 36 32</canonical_bands>
                <polymorphic_bands>278 175 164 119 99 71 62 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTAAACATTGCGAAAAAGATA</pcr_primer_p1>
		<pcr_primer_p2>TTATCAAGATCGTTGGTACTCC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATTAAACATTGCGAAAAAGATATCTGATAGTGAGAAAACAATTAATTCCAAAAATAGACACAAGATCTAAAAAAAAAAAGAATTTGTTCATTATCAAAAAATTTCAGTTCAAATGATATCATCGTTGATCTGTGTGTCAGAAAATTTGCAACGAGAAAAAGTGATCCAATCGAAGTAGCTGGCTCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAA</canonical_amplicon>
		<polymorphic_amplicon>AATTAAACATTGCGAAAAAGATATCTGATAGTGAGAAAACAATTAATTCCAAAAATAGACACAAGATCTAAAAAAAAAAAGAATTTGTTCATTATCAAAAAATTTCAGTTCAAATGATATCATCGTTGATMTGTGTGTCAGAAAATTTGCAACGAGAAAAAGTGATCCAATCGAAGTAGCTGGCTCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6660</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>727494</contig_pos>
        <strand>+</strand>
        <context>AAGTAGCTGG[A/C]TCGAATTGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGTGTCAGAAAATTTGCAACGAGAAAAAGTGATCCAATCGAAGTAGCTGG</left_flank>
        <right_flank>TCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAAC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAATGAATACAATTTTTCTTGCGACACAGATTCGGAATACATGAATTCCAAAACTACTTGTTCAGGATTCACATTAAGTTGAATCTCAGTTATTGAAGACGCCGGAATAGAATCGTCGATAAAGTTTCGAATATCGTGGCAAGTTTTACGGAGGATCATTCTGAAATTTGTTTTTTTTTTGTTGTTGAAATTTTTTGATTAAAAAGGCTTACAATGATCGATAATCCAGGTTTTCTATTATAGCGGACAGAACAATGTCGGGCATTTTATTGAGAGATGTCATCTGTATAGAAAATTAGGTTTTGAAAATTTAAAAATTAAACATTGCGAAAAAGATATCTGATAGTGAGAAAACAATTAATTCCAAAAATAGACACAAGATCTAAAAAAAAAAAGAATTTGTTCATTATCAAAAAATTTCAGTTCAAATGATATCATCGTTGATCTGTGTGTCAGAAAATTTGCAACGAGAAAAAGTGATCCAATCGAAGTAGCTGGCTCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAAACCTCATCTGGATAGGTTCCTTCGAATAACTGCTCAAACCAATGTTTCAATTCTCTGCCTTTGTAATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGTTGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATCGTATTTTTTGGTACTGTAGATCAAAAATTAAAAAATCACACGAACCTCTTTCAACGAAC</canonical>
            <polymorphic>ATAATGAATACAATTTTTCTTGCGACACAGATTCGGAATACATGAATTCCAAAACTACTTGTTCAGGATTCACATTAAGTTGAATCTCAGTTATTGAAGACGCCGGAATAGAATCGTCGATAAAGTTTCGAATATCGTGGCAAGTTTTACGGAGGATCATTCTGAAATTTGTTTTTTTTTTGTTGTTGAAATTTTTTGATTAAAAAGGCTTACAATGATCGATAATCCAGGTTTTCTATTATAGCGGACAGAACAATGTCGGGCATTTTATTGAGAGATGTCATCTGTATAGAAAATTAGGTTTTGAAAATTTAAAAATTAAACATTGCGAAAAAGATATCTGATAGTGAGAAAACAATTAATTCCAAAAATAGACACAAGATCTAAAAAAAAAAAGAATTTGTTCATTATCAAAAAATTTCAGTTCAAATGATATCATCGTTGATCTGTGTGTCAGAAAATTTGCAACGAGAAAAAGTGATCCAATCGAAGTAGCTGGMTCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAAACCTCATCTGGATAGGTTCCTTCGAATAACTGCTCAAACCAATGTTTCAATTCTCTGCCTTTGTAATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGTTGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATCGTATTTTTTGGTACTGTAGATCAAAAATTAAAAAATCACACGAACCTCTTTCAACGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>289 287 212 208 4</canonical_bands>
                <polymorphic_bands>293 287 212 208</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTAAACATTGCGAAAAAGATA</pcr_primer_p1>
		<pcr_primer_p2>TTATCAAGATCGTTGGTACTCC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATTAAACATTGCGAAAAAGATATCTGATAGTGAGAAAACAATTAATTCCAAAAATAGACACAAGATCTAAAAAAAAAAAGAATTTGTTCATTATCAAAAAATTTCAGTTCAAATGATATCATCGTTGATCTGTGTGTCAGAAAATTTGCAACGAGAAAAAGTGATCCAATCGAAGTAGCTGGCTCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAA</canonical_amplicon>
		<polymorphic_amplicon>AATTAAACATTGCGAAAAAGATATCTGATAGTGAGAAAACAATTAATTCCAAAAATAGACACAAGATCTAAAAAAAAAAAGAATTTGTTCATTATCAAAAAATTTCAGTTCAAATGATATCATCGTTGATCTGTGTGTCAGAAAATTTGCAACGAGAAAAAGTGATCCAATCGAAGTAGCTGGMTCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6661</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>727567</contig_pos>
        <strand>+</strand>
        <context>CCTCATCTGG[A/G]TAGGTTCCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAAACCTCATCTGG</left_flank>
        <right_flank>TAGGTTCCTTCGAATAACTGCTCAAACCAATGTTTCAATTCTCTGCCTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTAAGTTGAATCTCAGTTATTGAAGACGCCGGAATAGAATCGTCGATAAAGTTTCGAATATCGTGGCAAGTTTTACGGAGGATCATTCTGAAATTTGTTTTTTTTTTGTTGTTGAAATTTTTTGATTAAAAAGGCTTACAATGATCGATAATCCAGGTTTTCTATTATAGCGGACAGAACAATGTCGGGCATTTTATTGAGAGATGTCATCTGTATAGAAAATTAGGTTTTGAAAATTTAAAAATTAAACATTGCGAAAAAGATATCTGATAGTGAGAAAACAATTAATTCCAAAAATAGACACAAGATCTAAAAAAAAAAAGAATTTGTTCATTATCAAAAAATTTCAGTTCAAATGATATCATCGTTGATCTGTGTGTCAGAAAATTTGCAACGAGAAAAAGTGATCCAATCGAAGTAGCTGGCTCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAAACCTCATCTGGATAGGTTCCTTCGAATAACTGCTCAAACCAATGTTTCAATTCTCTGCCTTTGTAATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGTTGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATCGTATTTTTTGGTACTGTAGATCAAAAATTAAAAAATCACACGAACCTCTTTCAACGAACGCAACAACTCCAGTGAAATTGTGTCAACACAAATACGACATCTTTCAAAATGTGTGAATTTCTCCAACGGTTC</canonical>
            <polymorphic>ATTAAGTTGAATCTCAGTTATTGAAGACGCCGGAATAGAATCGTCGATAAAGTTTCGAATATCGTGGCAAGTTTTACGGAGGATCATTCTGAAATTTGTTTTTTTTTTGTTGTTGAAATTTTTTGATTAAAAAGGCTTACAATGATCGATAATCCAGGTTTTCTATTATAGCGGACAGAACAATGTCGGGCATTTTATTGAGAGATGTCATCTGTATAGAAAATTAGGTTTTGAAAATTTAAAAATTAAACATTGCGAAAAAGATATCTGATAGTGAGAAAACAATTAATTCCAAAAATAGACACAAGATCTAAAAAAAAAAAGAATTTGTTCATTATCAAAAAATTTCAGTTCAAATGATATCATCGTTGATCTGTGTGTCAGAAAATTTGCAACGAGAAAAAGTGATCCAATCGAAGTAGCTGGCTCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAAACCTCATCTGGRTAGGTTCCTTCGAATAACTGCTCAAACCAATGTTTCAATTCTCTGCCTTTGTAATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGTTGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATCGTATTTTTTGGTACTGTAGATCAAAAATTAAAAAATCACACGAACCTCTTTCAACGAACGCAACAACTCCAGTGAAATTGTGTCAACACAAATACGACATCTTTCAAAATGTGTGAATTTCTCCAACGGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>448 177 102 81 66 28 18 17 16 15 14 9 9</canonical_bands>
                <polymorphic_bands>448 177 102 81 81 28 18 17 16 14 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAAATTTGCAACGAGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTATGGGTCAATAAAATTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGAAAATTTGCAACGAGAAAAAGTGATCCAATCGAAGTAGCTGGCTCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAAACCTCATCTGGATAGGTTCCTTCGAATAACTGCTCAAACCAATGTTTCAATTCTCTGCCTTTGTAATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGTTGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAA</canonical_amplicon>
		<polymorphic_amplicon>AGAAAATTTGCAACGAGAAAAAGTGATCCAATCGAAGTAGCTGGCTCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAAACCTCATCTGGRTAGGTTCCTTCGAATAACTGCTCAAACCAATGTTTCAATTCTCTGCCTTTGTAATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGTTGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6662</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>727599</contig_pos>
        <strand>+</strand>
        <context>TCAAACCAAT[G/T]TTTCAATTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGATAAACCTCATCTGGATAGGTTCCTTCGAATAACTGCTCAAACCAAT</left_flank>
        <right_flank>TTTCAATTCTCTGCCTTTGTAATGTGGTTCGTGATGAAGTTCAAAATATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATAGAATCGTCGATAAAGTTTCGAATATCGTGGCAAGTTTTACGGAGGATCATTCTGAAATTTGTTTTTTTTTTGTTGTTGAAATTTTTTGATTAAAAAGGCTTACAATGATCGATAATCCAGGTTTTCTATTATAGCGGACAGAACAATGTCGGGCATTTTATTGAGAGATGTCATCTGTATAGAAAATTAGGTTTTGAAAATTTAAAAATTAAACATTGCGAAAAAGATATCTGATAGTGAGAAAACAATTAATTCCAAAAATAGACACAAGATCTAAAAAAAAAAAGAATTTGTTCATTATCAAAAAATTTCAGTTCAAATGATATCATCGTTGATCTGTGTGTCAGAAAATTTGCAACGAGAAAAAGTGATCCAATCGAAGTAGCTGGCTCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAAACCTCATCTGGATAGGTTCCTTCGAATAACTGCTCAAACCAATGTTTCAATTCTCTGCCTTTGTAATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGTTGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATCGTATTTTTTGGTACTGTAGATCAAAAATTAAAAAATCACACGAACCTCTTTCAACGAACGCAACAACTCCAGTGAAATTGTGTCAACACAAATACGACATCTTTCAAAATGTGTGAATTTCTCCAACGGTTCCTCCACCATAAAGTTCGCCGTTCCCAGCTCTT</canonical>
            <polymorphic>GAATAGAATCGTCGATAAAGTTTCGAATATCGTGGCAAGTTTTACGGAGGATCATTCTGAAATTTGTTTTTTTTTTGTTGTTGAAATTTTTTGATTAAAAAGGCTTACAATGATCGATAATCCAGGTTTTCTATTATAGCGGACAGAACAATGTCGGGCATTTTATTGAGAGATGTCATCTGTATAGAAAATTAGGTTTTGAAAATTTAAAAATTAAACATTGCGAAAAAGATATCTGATAGTGAGAAAACAATTAATTCCAAAAATAGACACAAGATCTAAAAAAAAAAAGAATTTGTTCATTATCAAAAAATTTCAGTTCAAATGATATCATCGTTGATCTGTGTGTCAGAAAATTTGCAACGAGAAAAAGTGATCCAATCGAAGTAGCTGGCTCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAAACCTCATCTGGATAGGTTCCTTCGAATAACTGCTCAAACCAATKTTTCAATTCTCTGCCTTTGTAATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGTTGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATCGTATTTTTTGGTACTGTAGATCAAAAATTAAAAAATCACACGAACCTCTTTCAACGAACGCAACAACTCCAGTGAAATTGTGTCAACACAAATACGACATCTTTCAAAATGTGTGAATTTCTCCAACGGTTCCTCCACCATAAAGTTCGCCGTTCCCAGCTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAATTTGCAACGAGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTATGGGTCAATAAAATTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGAAAATTTGCAACGAGAAAAAGTGATCCAATCGAAGTAGCTGGCTCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAAACCTCATCTGGATAGGTTCCTTCGAATAACTGCTCAAACCAATGTTTCAATTCTCTGCCTTTGTAATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGTTGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAA</canonical_amplicon>
		<polymorphic_amplicon>AGAAAATTTGCAACGAGAAAAAGTGATCCAATCGAAGTAGCTGGCTCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAAACCTCATCTGGATAGGTTCCTTCGAATAACTGCTCAAACCAATKTTTCAATTCTCTGCCTTTGTAATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGTTGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6663</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>727657</contig_pos>
        <strand>+</strand>
        <context>ATTCCAGTGT[C/T]GGGTGATTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCTGCCTTTGTAATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGT</left_flank>
        <right_flank>GGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATTTGTTTTTTTTTTGTTGTTGAAATTTTTTGATTAAAAAGGCTTACAATGATCGATAATCCAGGTTTTCTATTATAGCGGACAGAACAATGTCGGGCATTTTATTGAGAGATGTCATCTGTATAGAAAATTAGGTTTTGAAAATTTAAAAATTAAACATTGCGAAAAAGATATCTGATAGTGAGAAAACAATTAATTCCAAAAATAGACACAAGATCTAAAAAAAAAAAGAATTTGTTCATTATCAAAAAATTTCAGTTCAAATGATATCATCGTTGATCTGTGTGTCAGAAAATTTGCAACGAGAAAAAGTGATCCAATCGAAGTAGCTGGCTCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAAACCTCATCTGGATAGGTTCCTTCGAATAACTGCTCAAACCAATGTTTCAATTCTCTGCCTTTGTAATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGTTGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATCGTATTTTTTGGTACTGTAGATCAAAAATTAAAAAATCACACGAACCTCTTTCAACGAACGCAACAACTCCAGTGAAATTGTGTCAACACAAATACGACATCTTTCAAAATGTGTGAATTTCTCCAACGGTTCCTCCACCATAAAGTTCGCCGTTCCCAGCTCTTTCGCATTTTTCCATTGCTCAGTTTCGACTACTTGATCCAATTTGAACACTCGCATATG</canonical>
            <polymorphic>GAAATTTGTTTTTTTTTTGTTGTTGAAATTTTTTGATTAAAAAGGCTTACAATGATCGATAATCCAGGTTTTCTATTATAGCGGACAGAACAATGTCGGGCATTTTATTGAGAGATGTCATCTGTATAGAAAATTAGGTTTTGAAAATTTAAAAATTAAACATTGCGAAAAAGATATCTGATAGTGAGAAAACAATTAATTCCAAAAATAGACACAAGATCTAAAAAAAAAAAGAATTTGTTCATTATCAAAAAATTTCAGTTCAAATGATATCATCGTTGATCTGTGTGTCAGAAAATTTGCAACGAGAAAAAGTGATCCAATCGAAGTAGCTGGCTCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAAACCTCATCTGGATAGGTTCCTTCGAATAACTGCTCAAACCAATGTTTCAATTCTCTGCCTTTGTAATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGTYGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATCGTATTTTTTGGTACTGTAGATCAAAAATTAAAAAATCACACGAACCTCTTTCAACGAACGCAACAACTCCAGTGAAATTGTGTCAACACAAATACGACATCTTTCAAAATGTGTGAATTTCTCCAACGGTTCCTCCACCATAAAGTTCGCCGTTCCCAGCTCTTTCGCATTTTTCCATTGCTCAGTTTCGACTACTTGATCCAATTTGAACACTCGCATATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATAGAACGTCTTCTGGATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTGGATTTTTCTGAACAT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAAACCTCATCTGGATAGGTTCCTTCGAATAACTGCTCAAACCAATGTTTCAATTCTCTGCCTTTGTAATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGTTGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAAACCTCATCTGGATAGGTTCCTTCGAATAACTGCTCAAACCAATGTTTCAATTCTCTGCCTTTGTAATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGTYGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6664</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>727697</contig_pos>
        <strand>+</strand>
        <context>TGACCCATAA[A/T]AACTGAAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTCCAGTGTTGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAA</left_flank>
        <right_flank>AACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGGCTTACAATGATCGATAATCCAGGTTTTCTATTATAGCGGACAGAACAATGTCGGGCATTTTATTGAGAGATGTCATCTGTATAGAAAATTAGGTTTTGAAAATTTAAAAATTAAACATTGCGAAAAAGATATCTGATAGTGAGAAAACAATTAATTCCAAAAATAGACACAAGATCTAAAAAAAAAAAGAATTTGTTCATTATCAAAAAATTTCAGTTCAAATGATATCATCGTTGATCTGTGTGTCAGAAAATTTGCAACGAGAAAAAGTGATCCAATCGAAGTAGCTGGCTCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAAACCTCATCTGGATAGGTTCCTTCGAATAACTGCTCAAACCAATGTTTCAATTCTCTGCCTTTGTAATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGTTGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATCGTATTTTTTGGTACTGTAGATCAAAAATTAAAAAATCACACGAACCTCTTTCAACGAACGCAACAACTCCAGTGAAATTGTGTCAACACAAATACGACATCTTTCAAAATGTGTGAATTTCTCCAACGGTTCCTCCACCATAAAGTTCGCCGTTCCCAGCTCTTTCGCATTTTTCCATTGCTCAGTTTCGACTACTTGATCCAATTTGAACACTCGCATATGTGGTCCTGTCGCAGGGAAAATTAAAATCTCCTCCAGCTTC</canonical>
            <polymorphic>AAAGGCTTACAATGATCGATAATCCAGGTTTTCTATTATAGCGGACAGAACAATGTCGGGCATTTTATTGAGAGATGTCATCTGTATAGAAAATTAGGTTTTGAAAATTTAAAAATTAAACATTGCGAAAAAGATATCTGATAGTGAGAAAACAATTAATTCCAAAAATAGACACAAGATCTAAAAAAAAAAAGAATTTGTTCATTATCAAAAAATTTCAGTTCAAATGATATCATCGTTGATCTGTGTGTCAGAAAATTTGCAACGAGAAAAAGTGATCCAATCGAAGTAGCTGGCTCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAAACCTCATCTGGATAGGTTCCTTCGAATAACTGCTCAAACCAATGTTTCAATTCTCTGCCTTTGTAATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGTTGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAAWAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATCGTATTTTTTGGTACTGTAGATCAAAAATTAAAAAATCACACGAACCTCTTTCAACGAACGCAACAACTCCAGTGAAATTGTGTCAACACAAATACGACATCTTTCAAAATGTGTGAATTTCTCCAACGGTTCCTCCACCATAAAGTTCGCCGTTCCCAGCTCTTTCGCATTTTTCCATTGCTCAGTTTCGACTACTTGATCCAATTTGAACACTCGCATATGTGGTCCTGTCGCAGGGAAAATTAAAATCTCCTCCAGCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTGGTTCGTGATGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>GATATTTTGACTTTTTCAGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>315</pcr_amplicon_size>
		<canonical_amplicon>ATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGTTGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATC</canonical_amplicon>
		<polymorphic_amplicon>ATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGTTGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAAWAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6665</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>727748</contig_pos>
        <strand>+</strand>
        <context>AAACGAATCG[A/T]CCGAATTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCG</left_flank>
        <right_flank>CCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGTCGGGCATTTTATTGAGAGATGTCATCTGTATAGAAAATTAGGTTTTGAAAATTTAAAAATTAAACATTGCGAAAAAGATATCTGATAGTGAGAAAACAATTAATTCCAAAAATAGACACAAGATCTAAAAAAAAAAAGAATTTGTTCATTATCAAAAAATTTCAGTTCAAATGATATCATCGTTGATCTGTGTGTCAGAAAATTTGCAACGAGAAAAAGTGATCCAATCGAAGTAGCTGGCTCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAAACCTCATCTGGATAGGTTCCTTCGAATAACTGCTCAAACCAATGTTTCAATTCTCTGCCTTTGTAATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGTTGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATCGTATTTTTTGGTACTGTAGATCAAAAATTAAAAAATCACACGAACCTCTTTCAACGAACGCAACAACTCCAGTGAAATTGTGTCAACACAAATACGACATCTTTCAAAATGTGTGAATTTCTCCAACGGTTCCTCCACCATAAAGTTCGCCGTTCCCAGCTCTTTCGCATTTTTCCATTGCTCAGTTTCGACTACTTGATCCAATTTGAACACTCGCATATGTGGTCCTGTCGCAGGGAAAATTAAAATCTCCTCCAGCTTCTCCGAATCGATATTTGGCAAAATCTTCATGATCTCGTTTTGATCTCCCATC</canonical>
            <polymorphic>AATGTCGGGCATTTTATTGAGAGATGTCATCTGTATAGAAAATTAGGTTTTGAAAATTTAAAAATTAAACATTGCGAAAAAGATATCTGATAGTGAGAAAACAATTAATTCCAAAAATAGACACAAGATCTAAAAAAAAAAAGAATTTGTTCATTATCAAAAAATTTCAGTTCAAATGATATCATCGTTGATCTGTGTGTCAGAAAATTTGCAACGAGAAAAAGTGATCCAATCGAAGTAGCTGGCTCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAAACCTCATCTGGATAGGTTCCTTCGAATAACTGCTCAAACCAATGTTTCAATTCTCTGCCTTTGTAATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGTTGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGWCCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATCGTATTTTTTGGTACTGTAGATCAAAAATTAAAAAATCACACGAACCTCTTTCAACGAACGCAACAACTCCAGTGAAATTGTGTCAACACAAATACGACATCTTTCAAAATGTGTGAATTTCTCCAACGGTTCCTCCACCATAAAGTTCGCCGTTCCCAGCTCTTTCGCATTTTTCCATTGCTCAGTTTCGACTACTTGATCCAATTTGAACACTCGCATATGTGGTCCTGTCGCAGGGAAAATTAAAATCTCCTCCAGCTTCTCCGAATCGATATTTGGCAAAATCTTCATGATCTCGTTTTGATCTCCCATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>295 234 168 82 81 61 43 22 14</canonical_bands>
                <polymorphic_bands>295 234 190 82 81 61 43 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGTGATTGAAGAAAATCTG</pcr_primer_p1>
		<pcr_primer_p2>GATATTTTGACTTTTTCAGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>278</pcr_amplicon_size>
		<canonical_amplicon>GGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATC</canonical_amplicon>
		<polymorphic_amplicon>GGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGWCCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6666</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>727782</contig_pos>
        <strand>+</strand>
        <context>AATATTGAAA[G/T]CCTTCAaaga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAA</left_flank>
        <right_flank>CCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGAAAATTAGGTTTTGAAAATTTAAAAATTAAACATTGCGAAAAAGATATCTGATAGTGAGAAAACAATTAATTCCAAAAATAGACACAAGATCTAAAAAAAAAAAGAATTTGTTCATTATCAAAAAATTTCAGTTCAAATGATATCATCGTTGATCTGTGTGTCAGAAAATTTGCAACGAGAAAAAGTGATCCAATCGAAGTAGCTGGCTCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAAACCTCATCTGGATAGGTTCCTTCGAATAACTGCTCAAACCAATGTTTCAATTCTCTGCCTTTGTAATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGTTGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATCGTATTTTTTGGTACTGTAGATCAAAAATTAAAAAATCACACGAACCTCTTTCAACGAACGCAACAACTCCAGTGAAATTGTGTCAACACAAATACGACATCTTTCAAAATGTGTGAATTTCTCCAACGGTTCCTCCACCATAAAGTTCGCCGTTCCCAGCTCTTTCGCATTTTTCCATTGCTCAGTTTCGACTACTTGATCCAATTTGAACACTCGCATATGTGGTCCTGTCGCAGGGAAAATTAAAATCTCCTCCAGCTTCTCCGAATCGATATTTGGCAAAATCTTCATGATCTCGTTTTGATCTCCCATCACCAAATTGAAACTCGCGGTTTTTAATGGGATTT</canonical>
            <polymorphic>ATAGAAAATTAGGTTTTGAAAATTTAAAAATTAAACATTGCGAAAAAGATATCTGATAGTGAGAAAACAATTAATTCCAAAAATAGACACAAGATCTAAAAAAAAAAAGAATTTGTTCATTATCAAAAAATTTCAGTTCAAATGATATCATCGTTGATCTGTGTGTCAGAAAATTTGCAACGAGAAAAAGTGATCCAATCGAAGTAGCTGGCTCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAAACCTCATCTGGATAGGTTCCTTCGAATAACTGCTCAAACCAATGTTTCAATTCTCTGCCTTTGTAATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGTTGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAKCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATCGTATTTTTTGGTACTGTAGATCAAAAATTAAAAAATCACACGAACCTCTTTCAACGAACGCAACAACTCCAGTGAAATTGTGTCAACACAAATACGACATCTTTCAAAATGTGTGAATTTCTCCAACGGTTCCTCCACCATAAAGTTCGCCGTTCCCAGCTCTTTCGCATTTTTCCATTGCTCAGTTTCGACTACTTGATCCAATTTGAACACTCGCATATGTGGTCCTGTCGCAGGGAAAATTAAAATCTCCTCCAGCTTCTCCGAATCGATATTTGGCAAAATCTTCATGATCTCGTTTTGATCTCCCATCACCAAATTGAAACTCGCGGTTTTTAATGGGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>312 289 207 99 89 4</canonical_bands>
                <polymorphic_bands>601 207 99 89 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGTGATTGAAGAAAATCTG</pcr_primer_p1>
		<pcr_primer_p2>GATATTTTGACTTTTTCAGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>278</pcr_amplicon_size>
		<canonical_amplicon>GGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATC</canonical_amplicon>
		<polymorphic_amplicon>GGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAKCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6667</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>727820</contig_pos>
        <strand></strand>
        <context>cagttgcaaa[A/T]atgatcttcg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAA</left_flank>
        <right_flank>ATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCGAAAAAGATATCTGATAGTGAGAAAACAATTAATTCCAAAAATAGACACAAGATCTAAAAAAAAAAAGAATTTGTTCATTATCAAAAAATTTCAGTTCAAATGATATCATCGTTGATCTGTGTGTCAGAAAATTTGCAACGAGAAAAAGTGATCCAATCGAAGTAGCTGGCTCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAAACCTCATCTGGATAGGTTCCTTCGAATAACTGCTCAAACCAATGTTTCAATTCTCTGCCTTTGTAATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGTTGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATCGTATTTTTTGGTACTGTAGATCAAAAATTAAAAAATCACACGAACCTCTTTCAACGAACGCAACAACTCCAGTGAAATTGTGTCAACACAAATACGACATCTTTCAAAATGTGTGAATTTCTCCAACGGTTCCTCCACCATAAAGTTCGCCGTTCCCAGCTCTTTCGCATTTTTCCATTGCTCAGTTTCGACTACTTGATCCAATTTGAACACTCGCATATGTGGTCCTGTCGCAGGGAAAATTAAAATCTCCTCCAGCTTCTCCGAATCGATATTTGGCAAAATCTTCATGATCTCGTTTTGATCTCCCATCACCAAATTGAAACTCGCGGTTTTTAATGGGATTTTTCGGGAGGTGAGTATATTCTGGAGCTTGTCAAGGAAC</canonical>
            <polymorphic>TGCGAAAAAGATATCTGATAGTGAGAAAACAATTAATTCCAAAAATAGACACAAGATCTAAAAAAAAAAAGAATTTGTTCATTATCAAAAAATTTCAGTTCAAATGATATCATCGTTGATCTGTGTGTCAGAAAATTTGCAACGAGAAAAAGTGATCCAATCGAAGTAGCTGGCTCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAAACCTCATCTGGATAGGTTCCTTCGAATAACTGCTCAAACCAATGTTTCAATTCTCTGCCTTTGTAATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGTTGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAWATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATCGTATTTTTTGGTACTGTAGATCAAAAATTAAAAAATCACACGAACCTCTTTCAACGAACGCAACAACTCCAGTGAAATTGTGTCAACACAAATACGACATCTTTCAAAATGTGTGAATTTCTCCAACGGTTCCTCCACCATAAAGTTCGCCGTTCCCAGCTCTTTCGCATTTTTCCATTGCTCAGTTTCGACTACTTGATCCAATTTGAACACTCGCATATGTGGTCCTGTCGCAGGGAAAATTAAAATCTCCTCCAGCTTCTCCGAATCGATATTTGGCAAAATCTTCATGATCTCGTTTTGATCTCCCATCACCAAATTGAAACTCGCGGTTTTTAATGGGATTTTTCGGGAGGTGAGTATATTCTGGAGCTTGTCAAGGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGTGATTGAAGAAAATCTG</pcr_primer_p1>
		<pcr_primer_p2>GATATTTTGACTTTTTCAGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>278</pcr_amplicon_size>
		<canonical_amplicon>GGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATC</canonical_amplicon>
		<polymorphic_amplicon>GGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAWATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6668</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>727863</contig_pos>
        <strand></strand>
        <context>aatttcaaga[C/A]aaatagaaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGA</left_flank>
        <right_flank>AAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTT</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAGACACAAGATCTAAAAAAAAAAAGAATTTGTTCATTATCAAAAAATTTCAGTTCAAATGATATCATCGTTGATCTGTGTGTCAGAAAATTTGCAACGAGAAAAAGTGATCCAATCGAAGTAGCTGGCTCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAAACCTCATCTGGATAGGTTCCTTCGAATAACTGCTCAAACCAATGTTTCAATTCTCTGCCTTTGTAATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGTTGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATCGTATTTTTTGGTACTGTAGATCAAAAATTAAAAAATCACACGAACCTCTTTCAACGAACGCAACAACTCCAGTGAAATTGTGTCAACACAAATACGACATCTTTCAAAATGTGTGAATTTCTCCAACGGTTCCTCCACCATAAAGTTCGCCGTTCCCAGCTCTTTCGCATTTTTCCATTGCTCAGTTTCGACTACTTGATCCAATTTGAACACTCGCATATGTGGTCCTGTCGCAGGGAAAATTAAAATCTCCTCCAGCTTCTCCGAATCGATATTTGGCAAAATCTTCATGATCTCGTTTTGATCTCCCATCACCAAATTGAAACTCGCGGTTTTTAATGGGATTTTTCGGGAGGTGAGTATATTCTGGAGCTTGTCAAGGAACACAGAATGCAATTTCTCCAGAATAGATTGATCTAACGTTTTAT</canonical>
            <polymorphic>AATAGACACAAGATCTAAAAAAAAAAAGAATTTGTTCATTATCAAAAAATTTCAGTTCAAATGATATCATCGTTGATCTGTGTGTCAGAAAATTTGCAACGAGAAAAAGTGATCCAATCGAAGTAGCTGGCTCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAAACCTCATCTGGATAGGTTCCTTCGAATAACTGCTCAAACCAATGTTTCAATTCTCTGCCTTTGTAATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGTTGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGAMAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATCGTATTTTTTGGTACTGTAGATCAAAAATTAAAAAATCACACGAACCTCTTTCAACGAACGCAACAACTCCAGTGAAATTGTGTCAACACAAATACGACATCTTTCAAAATGTGTGAATTTCTCCAACGGTTCCTCCACCATAAAGTTCGCCGTTCCCAGCTCTTTCGCATTTTTCCATTGCTCAGTTTCGACTACTTGATCCAATTTGAACACTCGCATATGTGGTCCTGTCGCAGGGAAAATTAAAATCTCCTCCAGCTTCTCCGAATCGATATTTGGCAAAATCTTCATGATCTCGTTTTGATCTCCCATCACCAAATTGAAACTCGCGGTTTTTAATGGGATTTTTCGGGAGGTGAGTATATTCTGGAGCTTGTCAAGGAACACAGAATGCAATTTCTCCAGAATAGATTGATCTAACGTTTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGTGATTGAAGAAAATCTG</pcr_primer_p1>
		<pcr_primer_p2>GATATTTTGACTTTTTCAGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>278</pcr_amplicon_size>
		<canonical_amplicon>GGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATC</canonical_amplicon>
		<polymorphic_amplicon>GGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGAMAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6669</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>727962</contig_pos>
        <strand>+</strand>
        <context>TAGATCAAAA[A/G]TTAAAAAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCACTGAAAAAGTCAAAATATCGTATTTTTTGGTACTGTAGATCAAAA</left_flank>
        <right_flank>TTAAAAAATCACACGAACCTCTTTCAACGAACGCAACAACTCCAGTGAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAGAAAAAGTGATCCAATCGAAGTAGCTGGCTCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAAACCTCATCTGGATAGGTTCCTTCGAATAACTGCTCAAACCAATGTTTCAATTCTCTGCCTTTGTAATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGTTGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATCGTATTTTTTGGTACTGTAGATCAAAAATTAAAAAATCACACGAACCTCTTTCAACGAACGCAACAACTCCAGTGAAATTGTGTCAACACAAATACGACATCTTTCAAAATGTGTGAATTTCTCCAACGGTTCCTCCACCATAAAGTTCGCCGTTCCCAGCTCTTTCGCATTTTTCCATTGCTCAGTTTCGACTACTTGATCCAATTTGAACACTCGCATATGTGGTCCTGTCGCAGGGAAAATTAAAATCTCCTCCAGCTTCTCCGAATCGATATTTGGCAAAATCTTCATGATCTCGTTTTGATCTCCCATCACCAAATTGAAACTCGCGGTTTTTAATGGGATTTTTCGGGAGGTGAGTATATTCTGGAGCTTGTCAAGGAACACAGAATGCAATTTCTCCAGAATAGATTGATCTAACGTTTTATGTTCTTCTGGTGGCTCCAGATCTACAGTAAAATATTCCAAATGAGACTTTTGATGTTTGAGAATCATTTCCAAATTTTTCCAGAAGTTCATTTCTTGGT</canonical>
            <polymorphic>CGAGAAAAAGTGATCCAATCGAAGTAGCTGGCTCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAAACCTCATCTGGATAGGTTCCTTCGAATAACTGCTCAAACCAATGTTTCAATTCTCTGCCTTTGTAATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGTTGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATCGTATTTTTTGGTACTGTAGATCAAAARTTAAAAAATCACACGAACCTCTTTCAACGAACGCAACAACTCCAGTGAAATTGTGTCAACACAAATACGACATCTTTCAAAATGTGTGAATTTCTCCAACGGTTCCTCCACCATAAAGTTCGCCGTTCCCAGCTCTTTCGCATTTTTCCATTGCTCAGTTTCGACTACTTGATCCAATTTGAACACTCGCATATGTGGTCCTGTCGCAGGGAAAATTAAAATCTCCTCCAGCTTCTCCGAATCGATATTTGGCAAAATCTTCATGATCTCGTTTTGATCTCCCATCACCAAATTGAAACTCGCGGTTTTTAATGGGATTTTTCGGGAGGTGAGTATATTCTGGAGCTTGTCAAGGAACACAGAATGCAATTTCTCCAGAATAGATTGATCTAACGTTTTATGTTCTTCTGGTGGCTCCAGATCTACAGTAAAATATTCCAAATGAGACTTTTGATGTTTGAGAATCATTTCCAAATTTTTCCAGAAGTTCATTTCTTGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>106 106 90 89 87 77 77 75 73 50 40 38 35 27 19 11</canonical_bands>
                <polymorphic_bands>139 106 106 90 87 77 77 75 73 40 38 35 27 19 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTTCAGAAAAATCCAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGTGTTGACACAATTTCACTG</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>ATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATCGTATTTTTTGGTACTGTAGATCAAAAATTAAAAAATCACACGAACCTCTTTCAACGAACGCAACAACTCCAGTGAAATTGTGTCAACACA</canonical_amplicon>
		<polymorphic_amplicon>ATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATCGTATTTTTTGGTACTGTAGATCAAAARTTAAAAAATCACACGAACCTCTTTCAACGAACGCAACAACTCCAGTGAAATTGTGTCAACACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6670</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>727976</contig_pos>
        <strand>+</strand>
        <context>AAAAATCACA[A/C]GAACCTCTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCAAAATATCGTATTTTTTGGTACTGTAGATCAAAAATTAAAAAATCACA</left_flank>
        <right_flank>GAACCTCTTTCAACGAACGCAACAACTCCAGTGAAATTGTGTCAACACAA</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAATCGAAGTAGCTGGCTCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAAACCTCATCTGGATAGGTTCCTTCGAATAACTGCTCAAACCAATGTTTCAATTCTCTGCCTTTGTAATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGTTGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATCGTATTTTTTGGTACTGTAGATCAAAAATTAAAAAATCACACGAACCTCTTTCAACGAACGCAACAACTCCAGTGAAATTGTGTCAACACAAATACGACATCTTTCAAAATGTGTGAATTTCTCCAACGGTTCCTCCACCATAAAGTTCGCCGTTCCCAGCTCTTTCGCATTTTTCCATTGCTCAGTTTCGACTACTTGATCCAATTTGAACACTCGCATATGTGGTCCTGTCGCAGGGAAAATTAAAATCTCCTCCAGCTTCTCCGAATCGATATTTGGCAAAATCTTCATGATCTCGTTTTGATCTCCCATCACCAAATTGAAACTCGCGGTTTTTAATGGGATTTTTCGGGAGGTGAGTATATTCTGGAGCTTGTCAAGGAACACAGAATGCAATTTCTCCAGAATAGATTGATCTAACGTTTTATGTTCTTCTGGTGGCTCCAGATCTACAGTAAAATATTCCAAATGAGACTTTTGATGTTTGAGAATCATTTCCAAATTTTTCCAGAAGTTCATTTCTTGGTCTGGTTTAGAATAT</canonical>
            <polymorphic>CCAATCGAAGTAGCTGGCTCGAATTGATAGAACGTCTTCTGGATTTCCTGGTATTCTGGAGTACCAACGATCTTGATAAACCTCATCTGGATAGGTTCCTTCGAATAACTGCTCAAACCAATGTTTCAATTCTCTGCCTTTGTAATGTGGTTCGTGATGAAGTTCAAAATATTCCAGTGTTGGGTGATTGAAGAAAATCTGAAATTTTATTGACCCATAATAACTGAAATATGGGTGCCAATGTTCAGAAAAATCCAGAAAAAACGAATCGACCGAATTTTTCTAGAATTTCGAGAATATTGAAAGCCTTCAAAGAATATTTTTTAAAGTTGTCAGTTGCAAAAATGATCTTCGATTTTTGACTGATATACTCTGGAATTTCAAGACAAATAGAAAATTCTGGACTATTTTTTCAGGACTTTCAAGTTGACTCTTTTCCACTGAAAAAGTCAAAATATCGTATTTTTTGGTACTGTAGATCAAAAATTAAAAAATCACAMGAACCTCTTTCAACGAACGCAACAACTCCAGTGAAATTGTGTCAACACAAATACGACATCTTTCAAAATGTGTGAATTTCTCCAACGGTTCCTCCACCATAAAGTTCGCCGTTCCCAGCTCTTTCGCATTTTTCCATTGCTCAGTTTCGACTACTTGATCCAATTTGAACACTCGCATATGTGGTCCTGTCGCAGGGAAAATTAAAATCTCCTCCAGCTTCTCCGAATCGATATTTGGCAAAATCTTCATGATCTCGTTTTGATCTCCCATCACCAAATTGAAACTCGCGGTTTTTAATGGGATTTTTCGGGAGGTGAGTATATTCTGGAGCTTGTCAAGGAACACAGAATGCAATTTCTCCAGAATAGATTGATCTAACGTTTTATGTTCTTCTGGTGGCTCCAGATCTACAGTAAAATATTCCAAATGAGACTTTTGATGTTTGAGAATCATTTCCAAATTTTTCCAGAAGTTCATTTCTTGGTCTGGTTTAGAATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>203 149 101 90 75 57 54 51 44 34 28 25 23 22 12 8 7 7 6 2 2</canonical_bands>
                <polymorphic_bands>203 149 101 90 75 57 54 51 44 36 28 25 23 22 12 8 7 7 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCACTGAAAAAGTCAAAATATC</pcr_primer_p1>
		<pcr_primer_p2>GAGTGTTCAAATTGGATCAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TCCACTGAAAAAGTCAAAATATCGTATTTTTTGGTACTGTAGATCAAAAATTAAAAAATCACACGAACCTCTTTCAACGAACGCAACAACTCCAGTGAAATTGTGTCAACACAAATACGACATCTTTCAAAATGTGTGAATTTCTCCAACGGTTCCTCCACCATAAAGTTCGCCGTTCCCAGCTCTTTCGCATTTTTCCATTGCTCAGTTTCGACTACTTGATCCAATTTGAACACTC</canonical_amplicon>
		<polymorphic_amplicon>TCCACTGAAAAAGTCAAAATATCGTATTTTTTGGTACTGTAGATCAAAAATTAAAAAATCACAMGAACCTCTTTCAACGAACGCAACAACTCCAGTGAAATTGTGTCAACACAAATACGACATCTTTCAAAATGTGTGAATTTCTCCAACGGTTCCTCCACCATAAAGTTCGCCGTTCCCAGCTCTTTCGCATTTTTCCATTGCTCAGTTTCGACTACTTGATCCAATTTGAACACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6671</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>731231</contig_pos>
        <strand>+</strand>
        <context>AGCGAACTAT[C/G]AAACACAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACATTGATTTTTTTGTTTACCCGAATGCATACAACTGATAAGCGAACTAT</left_flank>
        <right_flank>AAACACAAAAATTGCCTCATCATAATTGTTCTCGATTTCCAACGTTTTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATGATACCCCATTATGCAAGTGAATTCATTATGCAAGTGAATTTTTCTCGCATAAAACTTAAAAGAAGGATCAATGTTGTTGTTTGATTAGAAGATGTTTTATGTGGTGGATGTGTATTATTCAACTAGTTTCTCGATATACATTTTGAATCCTGTTTTTGAGTTACTAATGATGAAGCTGAAAGGATGGGGGAACCCATAGTTGGAAGTGCCGCATTGTTACGAGCCGACTGAAGTCTTGCATGAAAGCGGAACGATAGCGACGCGCTGTGTGAAAAACGATGACTGTTCAGCGTTCAGAATGCACACTCTCGTCTCACAAAAAACCCGAAAATATTTCTGTGTTCATTCCTTTGAAGTTAACCTTTTTATTTCAATTTTCGAATATCTGAAATTCCGATTTTTTTGGAATTATTGAAATATTTAAATAACCACTTTCACTTTCACACATTGATTTTTTTGTTTACCCGAATGCATACAACTGATAAGCGAACTATCAAACACAAAAATTGCCTCATCATAATTGTTCTCGATTTCCAACGTTTTTCCTTTTCCATGTAGAGCACAGCCACATTTCTTTTCCCTCATTGAAATACTGTTTCGCACGATTATTCTATCAACTCTCTCCCTGTTTCCAGTCAAAAATGTCATCTGAAAAATCTCTGAATGAAATGCCTGGTGTTGTATTGTCTGCTGTTATGGATCACTTGGATTTCCGATCAATGTAAGTTACTTATATTTTCCTATGCTCAAAATACGACTCAATCTTTAAGATTGAGAATGCGAAAAGTTTGCCATGATTTACGAAATTTTATTGATGAAGTCGTTCCATCATCTTATATGACGAGAATCATTGTCACAGTGCGGCCATATGACGTTGAGTTAATTCTGGAAGATTCGAAAACTGGAGCTAGGTATACTACTATATATGCTCATCGAAATGTTTGGAATGATCTGGATATTATTTTGAAACATCAAAAGGAAGTGACAAAAATATT</canonical>
            <polymorphic>TTATGATACCCCATTATGCAAGTGAATTCATTATGCAAGTGAATTTTTCTCGCATAAAACTTAAAAGAAGGATCAATGTTGTTGTTTGATTAGAAGATGTTTTATGTGGTGGATGTGTATTATTCAACTAGTTTCTCGATATACATTTTGAATCCTGTTTTTGAGTTACTAATGATGAAGCTGAAAGGATGGGGGAACCCATAGTTGGAAGTGCCGCATTGTTACGAGCCGACTGAAGTCTTGCATGAAAGCGGAACGATAGCGACGCGCTGTGTGAAAAACGATGACTGTTCAGCGTTCAGAATGCACACTCTCGTCTCACAAAAAACCCGAAAATATTTCTGTGTTCATTCCTTTGAAGTTAACCTTTTTATTTCAATTTTCGAATATCTGAAATTCCGATTTTTTTGGAATTATTGAAATATTTAAATAACCACTTTCACTTTCACACATTGATTTTTTTGTTTACCCGAATGCATACAACTGATAAGCGAACTATSAAACACAAAAATTGCCTCATCATAATTGTTCTCGATTTCCAACGTTTTTCCTTTTCCATGTAGAGCACAGCCACATTTCTTTTCCCTCATTGAAATACTGTTTCGCACGATTATTCTATCAACTCTCTCCCTGTTTCCAGTCAAAAATGTCATCTGAAAAATCTCTGAATGAAATGCCTGGTGTTGTATTGTCTGCTGTTATGGATCACTTGGATTTCCGATCAATGTAAGTTACTTATATTTTCCTATGCTCAAAATACGACTCAATCTTTAAGATTGAGAATGCGAAAAGTTTGCCATGATTTACGAAATTTTATTGATGAAGTCGTTCCATCATCTTATATGACGAGAATCATTGTCACAGTGCGGCCATATGACGTTGAGTTAATTCTGGAAGATTCGAAAACTGGAGCTAGGTATACTACTATATATGCTCATCGAAATGTTTGGAATGATCTGGATATTATTTTGAAACATCAAAAGGAAGTGACAAAAATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATAACCACTTTCACTTTCACA</pcr_primer_p1>
		<pcr_primer_p2>CATTTCATTCAGAGATTTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATAACCACTTTCACTTTCACACATTGATTTTTTTGTTTACCCGAATGCATACAACTGATAAGCGAACTATCAAACACAAAAATTGCCTCATCATAATTGTTCTCGATTTCCAACGTTTTTCCTTTTCCATGTAGAGCACAGCCACATTTCTTTTCCCTCATTGAAATACTGTTTCGCACGATTATTCTATCAACTCTCTCCCTGTTTCCAGTCAAAAATGTCATCTGAAAAATCTCTGAATGAAATG</canonical_amplicon>
		<polymorphic_amplicon>AAATAACCACTTTCACTTTCACACATTGATTTTTTTGTTTACCCGAATGCATACAACTGATAAGCGAACTATSAAACACAAAAATTGCCTCATCATAATTGTTCTCGATTTCCAACGTTTTTCCTTTTCCATGTAGAGCACAGCCACATTTCTTTTCCCTCATTGAAATACTGTTTCGCACGATTATTCTATCAACTCTCTCCCTGTTTCCAGTCAAAAATGTCATCTGAAAAATCTCTGAATGAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6673</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>731072</contig_pos>
        <strand>+</strand>
        <context>CGAAAATATT[C/T]CTGTGTTCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAGCGTTCAGAATGCACACTCTCGTCTCACAAAAAACCCGAAAATATT</left_flank>
        <right_flank>CTGTGTTCATTCCTTTGAAGTTAACCTTTTTATTTCAATTTTCGAATATC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTCCTGAACCATCAGTCTCTAAAATCTTTCACGCTTCAATACGAGTCACGTTACGAATCCGAGGAATTGAAGTGCTGGTTCGAGATATTATTTGACGGTATTATCAGGGAAAGGACTTGGTACAAAAGAATTCCCGGAACCGAGGACAATTTTCTAGTTATGATACCCCATTATGCAAGTGAATTCATTATGCAAGTGAATTTTTCTCGCATAAAACTTAAAAGAAGGATCAATGTTGTTGTTTGATTAGAAGATGTTTTATGTGGTGGATGTGTATTATTCAACTAGTTTCTCGATATACATTTTGAATCCTGTTTTTGAGTTACTAATGATGAAGCTGAAAGGATGGGGGAACCCATAGTTGGAAGTGCCGCATTGTTACGAGCCGACTGAAGTCTTGCATGAAAGCGGAACGATAGCGACGCGCTGTGTGAAAAACGATGACTGTTCAGCGTTCAGAATGCACACTCTCGTCTCACAAAAAACCCGAAAATATTTCTGTGTTCATTCCTTTGAAGTTAACCTTTTTATTTCAATTTTCGAATATCTGAAATTCCGATTTTTTTGGAATTATTGAAATATTTAAATAACCACTTTCACTTTCACACATTGATTTTTTTGTTTACCCGAATGCATACAACTGATAAGCGAACTATCAAACACAAAAATTGCCTCATCATAATTGTTCTCGATTTCCAACGTTTTTCCTTTTCCATGTAGAGCACAGCCACATTTCTTTTCCCTCATTGAAATACTGTTTCGCACGATTATTCTATCAACTCTCTCCCTGTTTCCAGTCAAAAATGTCATCTGAAAAATCTCTGAATGAAATGCCTGGTGTTGTATTGTCTGCTGTTATGGATCACTTGGATTTCCGATCAATGTAAGTTACTTATATTTTCCTATGCTCAAAATACGACTCAATCTTTAAGATTGAGAATGCGAAAAGTTTGCCATGATTTACGAAATTTTATTGATGAAGTCGTTCCATCATCTTA</canonical>
            <polymorphic>TACTCCTGAACCATCAGTCTCTAAAATCTTTCACGCTTCAATACGAGTCACGTTACGAATCCGAGGAATTGAAGTGCTGGTTCGAGATATTATTTGACGGTATTATCAGGGAAAGGACTTGGTACAAAAGAATTCCCGGAACCGAGGACAATTTTCTAGTTATGATACCCCATTATGCAAGTGAATTCATTATGCAAGTGAATTTTTCTCGCATAAAACTTAAAAGAAGGATCAATGTTGTTGTTTGATTAGAAGATGTTTTATGTGGTGGATGTGTATTATTCAACTAGTTTCTCGATATACATTTTGAATCCTGTTTTTGAGTTACTAATGATGAAGCTGAAAGGATGGGGGAACCCATAGTTGGAAGTGCCGCATTGTTACGAGCCGACTGAAGTCTTGCATGAAAGCGGAACGATAGCGACGCGCTGTGTGAAAAACGATGACTGTTCAGCGTTCAGAATGCACACTCTCGTCTCACAAAAAACCCGAAAATATTYCTGTGTTCATTCCTTTGAAGTTAACCTTTTTATTTCAATTTTCGAATATCTGAAATTCCGATTTTTTTGGAATTATTGAAATATTTAAATAACCACTTTCACTTTCACACATTGATTTTTTTGTTTACCCGAATGCATACAACTGATAAGCGAACTATCAAACACAAAAATTGCCTCATCATAATTGTTCTCGATTTCCAACGTTTTTCCTTTTCCATGTAGAGCACAGCCACATTTCTTTTCCCTCATTGAAATACTGTTTCGCACGATTATTCTATCAACTCTCTCCCTGTTTCCAGTCAAAAATGTCATCTGAAAAATCTCTGAATGAAATGCCTGGTGTTGTATTGTCTGCTGTTATGGATCACTTGGATTTCCGATCAATGTAAGTTACTTATATTTTCCTATGCTCAAAATACGACTCAATCTTTAAGATTGAGAATGCGAAAAGTTTGCCATGATTTACGAAATTTTATTGATGAAGTCGTTCCATCATCTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTGTTCAGCGTTCAGAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATCGAGAACAATTATGATGAG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GACTGTTCAGCGTTCAGAATGCACACTCTCGTCTCACAAAAAACCCGAAAATATTTCTGTGTTCATTCCTTTGAAGTTAACCTTTTTATTTCAATTTTCGAATATCTGAAATTCCGATTTTTTTGGAATTATTGAAATATTTAAATAACCACTTTCACTTTCACACATTGATTTTTTTGTTTACCCGAATGCATACAACTGATAAGCGAACTATCAAACACAAAAATTGCCTCATCATAATTGTTCTCGATTT</canonical_amplicon>
		<polymorphic_amplicon>GACTGTTCAGCGTTCAGAATGCACACTCTCGTCTCACAAAAAACCCGAAAATATTYCTGTGTTCATTCCTTTGAAGTTAACCTTTTTATTTCAATTTTCGAATATCTGAAATTCCGATTTTTTTGGAATTATTGAAATATTTAAATAACCACTTTCACTTTCACACATTGATTTTTTTGTTTACCCGAATGCATACAACTGATAAGCGAACTATCAAACACAAAAATTGCCTCATCATAATTGTTCTCGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6674</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>731051</contig_pos>
        <strand>+</strand>
        <context>ACTCTCGTCT[C/T]ACAAAAAACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGTGTGAAAAACGATGACTGTTCAGCGTTCAGAATGCACACTCTCGTCT</left_flank>
        <right_flank>ACAAAAAACCCGAAAATATTTCTGTGTTCATTCCTTTGAAGTTAACCTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTTAAATAAAAAATTTAGATACTCCTGAACCATCAGTCTCTAAAATCTTTCACGCTTCAATACGAGTCACGTTACGAATCCGAGGAATTGAAGTGCTGGTTCGAGATATTATTTGACGGTATTATCAGGGAAAGGACTTGGTACAAAAGAATTCCCGGAACCGAGGACAATTTTCTAGTTATGATACCCCATTATGCAAGTGAATTCATTATGCAAGTGAATTTTTCTCGCATAAAACTTAAAAGAAGGATCAATGTTGTTGTTTGATTAGAAGATGTTTTATGTGGTGGATGTGTATTATTCAACTAGTTTCTCGATATACATTTTGAATCCTGTTTTTGAGTTACTAATGATGAAGCTGAAAGGATGGGGGAACCCATAGTTGGAAGTGCCGCATTGTTACGAGCCGACTGAAGTCTTGCATGAAAGCGGAACGATAGCGACGCGCTGTGTGAAAAACGATGACTGTTCAGCGTTCAGAATGCACACTCTCGTCTCACAAAAAACCCGAAAATATTTCTGTGTTCATTCCTTTGAAGTTAACCTTTTTATTTCAATTTTCGAATATCTGAAATTCCGATTTTTTTGGAATTATTGAAATATTTAAATAACCACTTTCACTTTCACACATTGATTTTTTTGTTTACCCGAATGCATACAACTGATAAGCGAACTATCAAACACAAAAATTGCCTCATCATAATTGTTCTCGATTTCCAACGTTTTTCCTTTTCCATGTAGAGCACAGCCACATTTCTTTTCCCTCATTGAAATACTGTTTCGCACGATTATTCTATCAACTCTCTCCCTGTTTCCAGTCAAAAATGTCATCTGAAAAATCTCTGAATGAAATGCCTGGTGTTGTATTGTCTGCTGTTATGGATCACTTGGATTTCCGATCAATGTAAGTTACTTATATTTTCCTATGCTCAAAATACGACTCAATCTTTAAGATTGAGAATGCGAAAAGTTTGCCATGATTTACGAAATTTTATTGA</canonical>
            <polymorphic>TGTTTAAATAAAAAATTTAGATACTCCTGAACCATCAGTCTCTAAAATCTTTCACGCTTCAATACGAGTCACGTTACGAATCCGAGGAATTGAAGTGCTGGTTCGAGATATTATTTGACGGTATTATCAGGGAAAGGACTTGGTACAAAAGAATTCCCGGAACCGAGGACAATTTTCTAGTTATGATACCCCATTATGCAAGTGAATTCATTATGCAAGTGAATTTTTCTCGCATAAAACTTAAAAGAAGGATCAATGTTGTTGTTTGATTAGAAGATGTTTTATGTGGTGGATGTGTATTATTCAACTAGTTTCTCGATATACATTTTGAATCCTGTTTTTGAGTTACTAATGATGAAGCTGAAAGGATGGGGGAACCCATAGTTGGAAGTGCCGCATTGTTACGAGCCGACTGAAGTCTTGCATGAAAGCGGAACGATAGCGACGCGCTGTGTGAAAAACGATGACTGTTCAGCGTTCAGAATGCACACTCTCGTCTYACAAAAAACCCGAAAATATTTCTGTGTTCATTCCTTTGAAGTTAACCTTTTTATTTCAATTTTCGAATATCTGAAATTCCGATTTTTTTGGAATTATTGAAATATTTAAATAACCACTTTCACTTTCACACATTGATTTTTTTGTTTACCCGAATGCATACAACTGATAAGCGAACTATCAAACACAAAAATTGCCTCATCATAATTGTTCTCGATTTCCAACGTTTTTCCTTTTCCATGTAGAGCACAGCCACATTTCTTTTCCCTCATTGAAATACTGTTTCGCACGATTATTCTATCAACTCTCTCCCTGTTTCCAGTCAAAAATGTCATCTGAAAAATCTCTGAATGAAATGCCTGGTGTTGTATTGTCTGCTGTTATGGATCACTTGGATTTCCGATCAATGTAAGTTACTTATATTTTCCTATGCTCAAAATACGACTCAATCTTTAAGATTGAGAATGCGAAAAGTTTGCCATGATTTACGAAATTTTATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>112 107 96 90 76 67 62 61 55 54 34 32 26 25 25 17 17 11 6 6 6 6 3 2 2 2</canonical_bands>
                <polymorphic_bands>112 107 96 90 76 67 62 61 55 54 36 34 32 26 25 17 17 6 6 6 6 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGATATACATTTTGAATCCTGT</pcr_primer_p1>
		<pcr_primer_p2>TGAAATAAAAAGGTTAACTTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TCGATATACATTTTGAATCCTGTTTTTGAGTTACTAATGATGAAGCTGAAAGGATGGGGGAACCCATAGTTGGAAGTGCCGCATTGTTACGAGCCGACTGAAGTCTTGCATGAAAGCGGAACGATAGCGACGCGCTGTGTGAAAAACGATGACTGTTCAGCGTTCAGAATGCACACTCTCGTCTCACAAAAAACCCGAAAATATTTCTGTGTTCATTCCTTTGAAGTTAACCTTTTTATTTCA</canonical_amplicon>
		<polymorphic_amplicon>TCGATATACATTTTGAATCCTGTTTTTGAGTTACTAATGATGAAGCTGAAAGGATGGGGGAACCCATAGTTGGAAGTGCCGCATTGTTACGAGCCGACTGAAGTCTTGCATGAAAGCGGAACGATAGCGACGCGCTGTGTGAAAAACGATGACTGTTCAGCGTTCAGAATGCACACTCTCGTCTYACAAAAAACCCGAAAATATTTCTGTGTTCATTCCTTTGAAGTTAACCTTTTTATTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6675</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>730992</contig_pos>
        <strand>+</strand>
        <context>GCGGAACGAT[A/T]GCGACGCGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGCCGCATTGTTACGAGCCGACTGAAGTCTTGCATGAAAGCGGAACGAT</left_flank>
        <right_flank>GCGACGCGCTGTGTGAAAAACGATGACTGTTCAGCGTTCAGAATGCACAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCACTGGAATTTTTCCGTCATCTGATAGAGGTTTGTGTTATTTGAAATCCCTAAACTGTTTAAATAAAAAATTTAGATACTCCTGAACCATCAGTCTCTAAAATCTTTCACGCTTCAATACGAGTCACGTTACGAATCCGAGGAATTGAAGTGCTGGTTCGAGATATTATTTGACGGTATTATCAGGGAAAGGACTTGGTACAAAAGAATTCCCGGAACCGAGGACAATTTTCTAGTTATGATACCCCATTATGCAAGTGAATTCATTATGCAAGTGAATTTTTCTCGCATAAAACTTAAAAGAAGGATCAATGTTGTTGTTTGATTAGAAGATGTTTTATGTGGTGGATGTGTATTATTCAACTAGTTTCTCGATATACATTTTGAATCCTGTTTTTGAGTTACTAATGATGAAGCTGAAAGGATGGGGGAACCCATAGTTGGAAGTGCCGCATTGTTACGAGCCGACTGAAGTCTTGCATGAAAGCGGAACGATAGCGACGCGCTGTGTGAAAAACGATGACTGTTCAGCGTTCAGAATGCACACTCTCGTCTCACAAAAAACCCGAAAATATTTCTGTGTTCATTCCTTTGAAGTTAACCTTTTTATTTCAATTTTCGAATATCTGAAATTCCGATTTTTTTGGAATTATTGAAATATTTAAATAACCACTTTCACTTTCACACATTGATTTTTTTGTTTACCCGAATGCATACAACTGATAAGCGAACTATCAAACACAAAAATTGCCTCATCATAATTGTTCTCGATTTCCAACGTTTTTCCTTTTCCATGTAGAGCACAGCCACATTTCTTTTCCCTCATTGAAATACTGTTTCGCACGATTATTCTATCAACTCTCTCCCTGTTTCCAGTCAAAAATGTCATCTGAAAAATCTCTGAATGAAATGCCTGGTGTTGTATTGTCTGCTGTTATGGATCACTTGGATTTCCGATCAATGTAAGTTACTTATATTTTCCTATGCTCAAAATACG</canonical>
            <polymorphic>ATTTCACTGGAATTTTTCCGTCATCTGATAGAGGTTTGTGTTATTTGAAATCCCTAAACTGTTTAAATAAAAAATTTAGATACTCCTGAACCATCAGTCTCTAAAATCTTTCACGCTTCAATACGAGTCACGTTACGAATCCGAGGAATTGAAGTGCTGGTTCGAGATATTATTTGACGGTATTATCAGGGAAAGGACTTGGTACAAAAGAATTCCCGGAACCGAGGACAATTTTCTAGTTATGATACCCCATTATGCAAGTGAATTCATTATGCAAGTGAATTTTTCTCGCATAAAACTTAAAAGAAGGATCAATGTTGTTGTTTGATTAGAAGATGTTTTATGTGGTGGATGTGTATTATTCAACTAGTTTCTCGATATACATTTTGAATCCTGTTTTTGAGTTACTAATGATGAAGCTGAAAGGATGGGGGAACCCATAGTTGGAAGTGCCGCATTGTTACGAGCCGACTGAAGTCTTGCATGAAAGCGGAACGATWGCGACGCGCTGTGTGAAAAACGATGACTGTTCAGCGTTCAGAATGCACACTCTCGTCTCACAAAAAACCCGAAAATATTTCTGTGTTCATTCCTTTGAAGTTAACCTTTTTATTTCAATTTTCGAATATCTGAAATTCCGATTTTTTTGGAATTATTGAAATATTTAAATAACCACTTTCACTTTCACACATTGATTTTTTTGTTTACCCGAATGCATACAACTGATAAGCGAACTATCAAACACAAAAATTGCCTCATCATAATTGTTCTCGATTTCCAACGTTTTTCCTTTTCCATGTAGAGCACAGCCACATTTCTTTTCCCTCATTGAAATACTGTTTCGCACGATTATTCTATCAACTCTCTCCCTGTTTCCAGTCAAAAATGTCATCTGAAAAATCTCTGAATGAAATGCCTGGTGTTGTATTGTCTGCTGTTATGGATCACTTGGATTTCCGATCAATGTAAGTTACTTATATTTTCCTATGCTCAAAATACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGATATACATTTTGAATCCTGT</pcr_primer_p1>
		<pcr_primer_p2>TGAAATAAAAAGGTTAACTTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TCGATATACATTTTGAATCCTGTTTTTGAGTTACTAATGATGAAGCTGAAAGGATGGGGGAACCCATAGTTGGAAGTGCCGCATTGTTACGAGCCGACTGAAGTCTTGCATGAAAGCGGAACGATAGCGACGCGCTGTGTGAAAAACGATGACTGTTCAGCGTTCAGAATGCACACTCTCGTCTCACAAAAAACCCGAAAATATTTCTGTGTTCATTCCTTTGAAGTTAACCTTTTTATTTCA</canonical_amplicon>
		<polymorphic_amplicon>TCGATATACATTTTGAATCCTGTTTTTGAGTTACTAATGATGAAGCTGAAAGGATGGGGGAACCCATAGTTGGAAGTGCCGCATTGTTACGAGCCGACTGAAGTCTTGCATGAAAGCGGAACGATWGCGACGCGCTGTGTGAAAAACGATGACTGTTCAGCGTTCAGAATGCACACTCTCGTCTCACAAAAAACCCGAAAATATTTCTGTGTTCATTCCTTTGAAGTTAACCTTTTTATTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6676</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>114119</contig_pos>
        <strand>+</strand>
        <context>GAAGCTGGGG[A/G]AAACAGATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTTATAGAAAATGAATGGTCAGCAAGTGGTAACCAAAGAGAAGCTGGGG</left_flank>
        <right_flank>AAACAGATGACGTGATCTGGAATCAGAATTCAGATGTAGATGGGAAAATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAAATAATGAAAATTTCCAAAGAAACCTGACAGTTAGCGATTTTCAATTGAAAACTTTGCTGTTTCAAATTTCCCCCTTTGTGAGATTTACTTTTTTTTTACTTTGAAAGGCTCATGCTCATCAATCACATTTTCAAACTAACCACAAAAGAATTCAGTACATAATGGATACACCCTCGATGTTGATCTTCTCGTTGTCGCCTCGCCGAAACCGTCGTCGGAATCATTTTCCAAGAGAGACATGACTGTCGAGGTCAGCAAACTCGACATTGCCATTCTGAAATTTTTTTGTCTGGAACTATTATTTTAAAGCTTATATAAGGCTGCCATTCGATTGGGAAATGTAGCCGACCGACCGACCGACCGCCGACCCAGCCGTTCGAAATGGATGTCCTAAACTCAATAACAACAAGAAAACAAGGTGTACACAACAAGAAAAAAATACTAGGTTATAGAAAATGAATGGTCAGCAAGTGGTAACCAAAGAGAAGCTGGGGAAAACAGATGACGTGATCTGGAATCAGAATTCAGATGTAGATGGGAAAATTCTCAGGTGTCAAGTGATTCTTTATCATGGGATTATGGGAAAATTGAGGAGGAGTTCTGGATTCGACGTTTTTTTCAATTTCCTGTTGAGTTTTGATTTCCCAGGATTGTGAATTTGGATCAGCATCTGTGGAATTGATGTTTTGGAATAATGGAAAAGAAGTTGATATAGTACTAATGTTCAAAAACAAAGCTTAGACTTTATGACAACAGAGAAACGGTAATTTGCATTTTGCGATAAGAAAGTAATTTTGTTTCCAAGAATCCTATCCCACTCGACTCCTACACGTCCTTCTAGGTATGGCTTGACGTGGGAAACCTAAAAAGCGAAGCTGATTTTCAGCTGTCTCGTTCTGAAATTTTTCTAGTCTTCTGAAAAATTCAGCTGTTCAATTTTTTCTTTTTAATTTTTATGCTAGAATGAGCATGCGTCATTTTCGCACTCATTGGAG</canonical>
            <polymorphic>GAGAAATAATGAAAATTTCCAAAGAAACCTGACAGTTAGCGATTTTCAATTGAAAACTTTGCTGTTTCAAATTTCCCCCTTTGTGAGATTTACTTTTTTTTTACTTTGAAAGGCTCATGCTCATCAATCACATTTTCAAACTAACCACAAAAGAATTCAGTACATAATGGATACACCCTCGATGTTGATCTTCTCGTTGTCGCCTCGCCGAAACCGTCGTCGGAATCATTTTCCAAGAGAGACATGACTGTCGAGGTCAGCAAACTCGACATTGCCATTCTGAAATTTTTTTGTCTGGAACTATTATTTTAAAGCTTATATAAGGCTGCCATTCGATTGGGAAATGTAGCCGACCGACCGACCGACCGCCGACCCAGCCGTTCGAAATGGATGTCCTAAACTCAATAACAACAAGAAAACAAGGTGTACACAACAAGAAAAAAATACTAGGTTATAGAAAATGAATGGTCAGCAAGTGGTAACCAAAGAGAAGCTGGGGRAAACAGATGACGTGATCTGGAATCAGAATTCAGATGTAGATGGGAAAATTCTCAGGTGTCAAGTGATTCTTTATCATGGGATTATGGGAAAATTGAGGAGGAGTTCTGGATTCGACGTTTTTTTCAATTTCCTGTTGAGTTTTGATTTCCCAGGATTGTGAATTTGGATCAGCATCTGTGGAATTGATGTTTTGGAATAATGGAAAAGAAGTTGATATAGTACTAATGTTCAAAAACAAAGCTTAGACTTTATGACAACAGAGAAACGGTAATTTGCATTTTGCGATAAGAAAGTAATTTTGTTTCCAAGAATCCTATCCCACTCGACTCCTACACGTCCTTCTAGGTATGGCTTGACGTGGGAAACCTAAAAAGCGAAGCTGATTTTCAGCTGTCTCGTTCTGAAATTTTTCTAGTCTTCTGAAAAATTCAGCTGTTCAATTTTTTCTTTTTAATTTTTATGCTAGAATGAGCATGCGTCATTTTCGCACTCATTGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCCTAAACTCAATAACAACAAG</pcr_primer_p1>
		<pcr_primer_p2>AACTCAACAGGAAATTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTCCTAAACTCAATAACAACAAGAAAACAAGGTGTACACAACAAGAAAAAAATACTAGGTTATAGAAAATGAATGGTCAGCAAGTGGTAACCAAAGAGAAGCTGGGGAAAACAGATGACGTGATCTGGAATCAGAATTCAGATGTAGATGGGAAAATTCTCAGGTGTCAAGTGATTCTTTATCATGGGATTATGGGAAAATTGAGGAGGAGTTCTGGATTCGACGTTTTTTTCAATTTCCTGTTGAGTT</canonical_amplicon>
		<polymorphic_amplicon>TGTCCTAAACTCAATAACAACAAGAAAACAAGGTGTACACAACAAGAAAAAAATACTAGGTTATAGAAAATGAATGGTCAGCAAGTGGTAACCAAAGAGAAGCTGGGGRAAACAGATGACGTGATCTGGAATCAGAATTCAGATGTAGATGGGAAAATTCTCAGGTGTCAAGTGATTCTTTATCATGGGATTATGGGAAAATTGAGGAGGAGTTCTGGATTCGACGTTTTTTTCAATTTCCTGTTGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6702</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>113936</contig_pos>
        <strand></strand>
        <context>TTYYAAAGCT[T/C]ATATAAGGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CGACATTGCCATTCTGAAATTTTTTTGTCTGGAACTATTATTTTAAAGCT</left_flank>
        <right_flank>ATATAAGGCTGCCATTCGATTGGGAAATGTAGCCGACCGACCGACCGACC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAAACTGTTGTATGCTCTTTTTTCTATCATCTTACTTCGTTTAAAGAAGAGCTTTTTCAACAGTGTTATCCAGTCTGCATGGAAATCTGAAATGTGTTTTTTCTAGATTATTTTTTGCCGGTTTCAGGTTGTTTACTTTGCCAATTGTTTGACTATTCAATTCGTTTTGAACAGCTATCACGAGAAATAATGAAAATTTCCAAAGAAACCTGACAGTTAGCGATTTTCAATTGAAAACTTTGCTGTTTCAAATTTCCCCCTTTGTGAGATTTACTTTTTTTTTACTTTGAAAGGCTCATGCTCATCAATCACATTTTCAAACTAACCACAAAAGAATTCAGTACATAATGGATACACCCTCGATGTTGATCTTCTCGTTGTCGCCTCGCCGAAACCGTCGTCGGAATCATTTTCCAAGAGAGACATGACTGTCGAGGTCAGCAAACTCGACATTGCCATTCTGAAATTTTTTTGTCTGGAACTATTATTTTAAAGCTTATATAAGGCTGCCATTCGATTGGGAAATGTAGCCGACCGACCGACCGACCGCCGACCCAGCCGTTCGAAATGGATGTCCTAAACTCAATAACAACAAGAAAACAAGGTGTACACAACAAGAAAAAAATACTAGGTTATAGAAAATGAATGGTCAGCAAGTGGTAACCAAAGAGAAGCTGGGGAAAACAGATGACGTGATCTGGAATCAGAATTCAGATGTAGATGGGAAAATTCTCAGGTGTCAAGTGATTCTTTATCATGGGATTATGGGAAAATTGAGGAGGAGTTCTGGATTCGACGTTTTTTTCAATTTCCTGTTGAGTTTTGATTTCCCAGGATTGTGAATTTGGATCAGCATCTGTGGAATTGATGTTTTGGAATAATGGAAAAGAAGTTGATATAGTACTAATGTTCAAAAACAAAGCTTAGACTTTATGACAACAGAGAAACGGTAATTTGCATTTTGCGATAAGAAAGTAATTTTGTTTCCAAGAATCCTA</canonical>
            <polymorphic>ATAAAACTGTTGTATGCTCTTTTTTCTATCATCTTACTTCGTTTAAAGAAGAGCTTTTTCAACAGTGTTATCCAGTCTGCATGGAAATCTGAAATGTGTTTTTTCTAGATTATTTTTTGCCGGTTTCAGGTTGTTTACTTTGCCAATTGTTTGACTATTCAATTCGTTTTGAACAGCTATCACGAGAAATAATGAAAATTTCCAAAGAAACCTGACAGTTAGCGATTTTCAATTGAAAACTTTGCTGTTTCAAATTTCCCCCTTTGTGAGATTTACTTTTTTTTTACTTTGAAAGGCTCATGCTCATCAATCACATTTTCAAACTAACCACAAAAGAATTCAGTACATAATGGATACACCCTCGATGTTGATCTTCTCGTTGTCGCCTCGCCGAAACCGTCGTCGGAATCATTTTCCAAGAGAGACATGACTGTCGAGGTCAGCAAACTCGACATTGCCATTCTGAAATTTTTTTGTCTGGAACTATTATTTTAAAGCTYATATAAGGCTGCCATTCGATTGGGAAATGTAGCCGACCGACCGACCGACCGCCGACCCAGCCGTTCGAAATGGATGTCCTAAACTCAATAACAACAAGAAAACAAGGTGTACACAACAAGAAAAAAATACTAGGTTATAGAAAATGAATGGTCAGCAAGTGGTAACCAAAGAGAAGCTGGGGAAAACAGATGACGTGATCTGGAATCAGAATTCAGATGTAGATGGGAAAATTCTCAGGTGTCAAGTGATTCTTTATCATGGGATTATGGGAAAATTGAGGAGGAGTTCTGGATTCGACGTTTTTTTCAATTTCCTGTTGAGTTTTGATTTCCCAGGATTGTGAATTTGGATCAGCATCTGTGGAATTGATGTTTTGGAATAATGGAAAAGAAGTTGATATAGTACTAATGTTCAAAAACAAAGCTTAGACTTTATGACAACAGAGAAACGGTAATTTGCATTTTGCGATAAGAAAGTAATTTTGTTTCCAAGAATCCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>495 427 78</canonical_bands>
                <polymorphic_bands>922 78</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCATTTTCCAAGAGAGACAT</pcr_primer_p1>
		<pcr_primer_p2>GCTGACCATTCATTTTCTATAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCATTTTCCAAGAGAGACATGACTGTCGAGGTCAGCAAACTCGACATTGCCATTCTGAAATTTTTTTGTCTGGAACTATTATTTTAAAGCTTATATAAGGCTGCCATTCGATTGGGAAATGTAGCCGACCGACCGACCGACCGCCGACCCAGCCGTTCGAAATGGATGTCCTAAACTCAATAACAACAAGAAAACAAGGTGTACACAACAAGAAAAAAATACTAGGTTATAGAAAATGAATGGTCAGC</canonical_amplicon>
		<polymorphic_amplicon>AATCATTTTCCAAGAGAGACATGACTGTCGAGGTCAGCAAACTCGACATTGCCATTCTGAAATTTTTTTGTCTGGAACTATTATTTTAAAGCTYATATAAGGCTGCCATTCGATTGGGAAATGTAGCCGACCGACCGACCGACCGCCGACCCAGCCGTTCGAAATGGATGTCCTAAACTCAATAACAACAAGAAAACAAGGTGTACACAACAAGAAAAAAATACTAGGTTATAGAAAATGAATGGTCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6703</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>113929</contig_pos>
        <strand></strand>
        <context>ACTATTATTY[T/C]AAAGCTYATA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCAAACTCGACATTGCCATTCTGAAATTTTTTTGTCTGGAACTATTATTT</left_flank>
        <right_flank>AAAGCTTATATAAGGCTGCCATTCGATTGGGAAATGTAGCCGACCGACCG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATAAGGATAAAACTGTTGTATGCTCTTTTTTCTATCATCTTACTTCGTTTAAAGAAGAGCTTTTTCAACAGTGTTATCCAGTCTGCATGGAAATCTGAAATGTGTTTTTTCTAGATTATTTTTTGCCGGTTTCAGGTTGTTTACTTTGCCAATTGTTTGACTATTCAATTCGTTTTGAACAGCTATCACGAGAAATAATGAAAATTTCCAAAGAAACCTGACAGTTAGCGATTTTCAATTGAAAACTTTGCTGTTTCAAATTTCCCCCTTTGTGAGATTTACTTTTTTTTTACTTTGAAAGGCTCATGCTCATCAATCACATTTTCAAACTAACCACAAAAGAATTCAGTACATAATGGATACACCCTCGATGTTGATCTTCTCGTTGTCGCCTCGCCGAAACCGTCGTCGGAATCATTTTCCAAGAGAGACATGACTGTCGAGGTCAGCAAACTCGACATTGCCATTCTGAAATTTTTTTGTCTGGAACTATTATTTTAAAGCTTATATAAGGCTGCCATTCGATTGGGAAATGTAGCCGACCGACCGACCGACCGCCGACCCAGCCGTTCGAAATGGATGTCCTAAACTCAATAACAACAAGAAAACAAGGTGTACACAACAAGAAAAAAATACTAGGTTATAGAAAATGAATGGTCAGCAAGTGGTAACCAAAGAGAAGCTGGGGAAAACAGATGACGTGATCTGGAATCAGAATTCAGATGTAGATGGGAAAATTCTCAGGTGTCAAGTGATTCTTTATCATGGGATTATGGGAAAATTGAGGAGGAGTTCTGGATTCGACGTTTTTTTCAATTTCCTGTTGAGTTTTGATTTCCCAGGATTGTGAATTTGGATCAGCATCTGTGGAATTGATGTTTTGGAATAATGGAAAAGAAGTTGATATAGTACTAATGTTCAAAAACAAAGCTTAGACTTTATGACAACAGAGAAACGGTAATTTGCATTTTGCGATAAGAAAGTAATTTTGTTTCCAAG</canonical>
            <polymorphic>TATAAGGATAAAACTGTTGTATGCTCTTTTTTCTATCATCTTACTTCGTTTAAAGAAGAGCTTTTTCAACAGTGTTATCCAGTCTGCATGGAAATCTGAAATGTGTTTTTTCTAGATTATTTTTTGCCGGTTTCAGGTTGTTTACTTTGCCAATTGTTTGACTATTCAATTCGTTTTGAACAGCTATCACGAGAAATAATGAAAATTTCCAAAGAAACCTGACAGTTAGCGATTTTCAATTGAAAACTTTGCTGTTTCAAATTTCCCCCTTTGTGAGATTTACTTTTTTTTTACTTTGAAAGGCTCATGCTCATCAATCACATTTTCAAACTAACCACAAAAGAATTCAGTACATAATGGATACACCCTCGATGTTGATCTTCTCGTTGTCGCCTCGCCGAAACCGTCGTCGGAATCATTTTCCAAGAGAGACATGACTGTCGAGGTCAGCAAACTCGACATTGCCATTCTGAAATTTTTTTGTCTGGAACTATTATTTYAAAGCTTATATAAGGCTGCCATTCGATTGGGAAATGTAGCCGACCGACCGACCGACCGCCGACCCAGCCGTTCGAAATGGATGTCCTAAACTCAATAACAACAAGAAAACAAGGTGTACACAACAAGAAAAAAATACTAGGTTATAGAAAATGAATGGTCAGCAAGTGGTAACCAAAGAGAAGCTGGGGAAAACAGATGACGTGATCTGGAATCAGAATTCAGATGTAGATGGGAAAATTCTCAGGTGTCAAGTGATTCTTTATCATGGGATTATGGGAAAATTGAGGAGGAGTTCTGGATTCGACGTTTTTTTCAATTTCCTGTTGAGTTTTGATTTCCCAGGATTGTGAATTTGGATCAGCATCTGTGGAATTGATGTTTTGGAATAATGGAAAAGAAGTTGATATAGTACTAATGTTCAAAAACAAAGCTTAGACTTTATGACAACAGAGAAACGGTAATTTGCATTTTGCGATAAGAAAGTAATTTTGTTTCCAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 449 51</canonical_bands>
                <polymorphic_bands>949 51</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>501 449 50</canonical_bands>
                <polymorphic_bands>950 50</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCATTTTCCAAGAGAGACAT</pcr_primer_p1>
		<pcr_primer_p2>GCTGACCATTCATTTTCTATAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCATTTTCCAAGAGAGACATGACTGTCGAGGTCAGCAAACTCGACATTGCCATTCTGAAATTTTTTTGTCTGGAACTATTATTTTAAAGCTTATATAAGGCTGCCATTCGATTGGGAAATGTAGCCGACCGACCGACCGACCGCCGACCCAGCCGTTCGAAATGGATGTCCTAAACTCAATAACAACAAGAAAACAAGGTGTACACAACAAGAAAAAAATACTAGGTTATAGAAAATGAATGGTCAGC</canonical_amplicon>
		<polymorphic_amplicon>AATCATTTTCCAAGAGAGACATGACTGTCGAGGTCAGCAAACTCGACATTGCCATTCTGAAATTTTTTTGTCTGGAACTATTATTTYAAAGCTTATATAAGGCTGCCATTCGATTGGGAAATGTAGCCGACCGACCGACCGACCGCCGACCCAGCCGTTCGAAATGGATGTCCTAAACTCAATAACAACAAGAAAACAAGGTGTACACAACAAGAAAAAAATACTAGGTTATAGAAAATGAATGGTCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6704</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>113928</contig_pos>
        <strand></strand>
        <context>AACTATTATT[T/C]YAAAGCTYAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGCAAACTCGACATTGCCATTCTGAAATTTTTTTGTCTGGAACTATTATT</left_flank>
        <right_flank>TAAAGCTTATATAAGGCTGCCATTCGATTGGGAAATGTAGCCGACCGACC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATAAGGATAAAACTGTTGTATGCTCTTTTTTCTATCATCTTACTTCGTTTAAAGAAGAGCTTTTTCAACAGTGTTATCCAGTCTGCATGGAAATCTGAAATGTGTTTTTTCTAGATTATTTTTTGCCGGTTTCAGGTTGTTTACTTTGCCAATTGTTTGACTATTCAATTCGTTTTGAACAGCTATCACGAGAAATAATGAAAATTTCCAAAGAAACCTGACAGTTAGCGATTTTCAATTGAAAACTTTGCTGTTTCAAATTTCCCCCTTTGTGAGATTTACTTTTTTTTTACTTTGAAAGGCTCATGCTCATCAATCACATTTTCAAACTAACCACAAAAGAATTCAGTACATAATGGATACACCCTCGATGTTGATCTTCTCGTTGTCGCCTCGCCGAAACCGTCGTCGGAATCATTTTCCAAGAGAGACATGACTGTCGAGGTCAGCAAACTCGACATTGCCATTCTGAAATTTTTTTGTCTGGAACTATTATTTTAAAGCTTATATAAGGCTGCCATTCGATTGGGAAATGTAGCCGACCGACCGACCGACCGCCGACCCAGCCGTTCGAAATGGATGTCCTAAACTCAATAACAACAAGAAAACAAGGTGTACACAACAAGAAAAAAATACTAGGTTATAGAAAATGAATGGTCAGCAAGTGGTAACCAAAGAGAAGCTGGGGAAAACAGATGACGTGATCTGGAATCAGAATTCAGATGTAGATGGGAAAATTCTCAGGTGTCAAGTGATTCTTTATCATGGGATTATGGGAAAATTGAGGAGGAGTTCTGGATTCGACGTTTTTTTCAATTTCCTGTTGAGTTTTGATTTCCCAGGATTGTGAATTTGGATCAGCATCTGTGGAATTGATGTTTTGGAATAATGGAAAAGAAGTTGATATAGTACTAATGTTCAAAAACAAAGCTTAGACTTTATGACAACAGAGAAACGGTAATTTGCATTTTGCGATAAGAAAGTAATTTTGTTTCCAA</canonical>
            <polymorphic>TTATAAGGATAAAACTGTTGTATGCTCTTTTTTCTATCATCTTACTTCGTTTAAAGAAGAGCTTTTTCAACAGTGTTATCCAGTCTGCATGGAAATCTGAAATGTGTTTTTTCTAGATTATTTTTTGCCGGTTTCAGGTTGTTTACTTTGCCAATTGTTTGACTATTCAATTCGTTTTGAACAGCTATCACGAGAAATAATGAAAATTTCCAAAGAAACCTGACAGTTAGCGATTTTCAATTGAAAACTTTGCTGTTTCAAATTTCCCCCTTTGTGAGATTTACTTTTTTTTTACTTTGAAAGGCTCATGCTCATCAATCACATTTTCAAACTAACCACAAAAGAATTCAGTACATAATGGATACACCCTCGATGTTGATCTTCTCGTTGTCGCCTCGCCGAAACCGTCGTCGGAATCATTTTCCAAGAGAGACATGACTGTCGAGGTCAGCAAACTCGACATTGCCATTCTGAAATTTTTTTGTCTGGAACTATTATTYTAAAGCTTATATAAGGCTGCCATTCGATTGGGAAATGTAGCCGACCGACCGACCGACCGCCGACCCAGCCGTTCGAAATGGATGTCCTAAACTCAATAACAACAAGAAAACAAGGTGTACACAACAAGAAAAAAATACTAGGTTATAGAAAATGAATGGTCAGCAAGTGGTAACCAAAGAGAAGCTGGGGAAAACAGATGACGTGATCTGGAATCAGAATTCAGATGTAGATGGGAAAATTCTCAGGTGTCAAGTGATTCTTTATCATGGGATTATGGGAAAATTGAGGAGGAGTTCTGGATTCGACGTTTTTTTCAATTTCCTGTTGAGTTTTGATTTCCCAGGATTGTGAATTTGGATCAGCATCTGTGGAATTGATGTTTTGGAATAATGGAAAAGAAGTTGATATAGTACTAATGTTCAAAAACAAAGCTTAGACTTTATGACAACAGAGAAACGGTAATTTGCATTTTGCGATAAGAAAGTAATTTTGTTTCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 449 52</canonical_bands>
                <polymorphic_bands>948 52</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>500 449 51</canonical_bands>
                <polymorphic_bands>949 51</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCATTTTCCAAGAGAGACAT</pcr_primer_p1>
		<pcr_primer_p2>GCTGACCATTCATTTTCTATAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCATTTTCCAAGAGAGACATGACTGTCGAGGTCAGCAAACTCGACATTGCCATTCTGAAATTTTTTTGTCTGGAACTATTATTTTAAAGCTTATATAAGGCTGCCATTCGATTGGGAAATGTAGCCGACCGACCGACCGACCGCCGACCCAGCCGTTCGAAATGGATGTCCTAAACTCAATAACAACAAGAAAACAAGGTGTACACAACAAGAAAAAAATACTAGGTTATAGAAAATGAATGGTCAGC</canonical_amplicon>
		<polymorphic_amplicon>AATCATTTTCCAAGAGAGACATGACTGTCGAGGTCAGCAAACTCGACATTGCCATTCTGAAATTTTTTTGTCTGGAACTATTATTYTAAAGCTTATATAAGGCTGCCATTCGATTGGGAAATGTAGCCGACCGACCGACCGACCGCCGACCCAGCCGTTCGAAATGGATGTCCTAAACTCAATAACAACAAGAAAACAAGGTGTACACAACAAGAAAAAAATACTAGGTTATAGAAAATGAATGGTCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6705</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>131975</contig_pos>
        <strand>+</strand>
        <context>GGACATAAAC[G/T]TTTTCCTCGa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTTCCCCGAAAATGAAGAGGTCGTGTTCTTAAATGTAGGGGACATAAAC</left_flank>
        <right_flank>TTTTCCTCGACATTCCGTTCATACACCCGTCAAGGAATTGAACTTTCGGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGCAGTAACCAATAGGAAAGCACTATCTCCTTCTCCATTCAAATAGTAAACGATGTCCTTAGCTTCCAGAAGTTCAGCTGGAGATGGAGTGTACCCGACGTATGCCAAAATGAGTGTTGGAATTCCAGCAATAACAGAAATGGTCGAGATGATAGGACCAAAGTGTTCGCGTTTATGAGCGTTGCTGAAAAATTTCAGGTTGGTTTAGGGTTGGAATCTAAAACAACTCTTACTCTGAGAGCACATGACATAACTGGAGGTATTGAACGGATGGAGAGCTGCAGGAAATGACAACGAAGAACACGAAAAGGATTAGGAAGATAATTCCTGAAAGTTACCGTTTTTTTCATTATTATATAGGAAGCCGTCAATTTTTCTAAAACTATTAGCTTTTTTGTTCGATAATCTTCAAAATTTTCAAAATCACATTTTTTTCATTTTGATATGTCTTCCCCGAAAATGAAGAGGTCGTGTTCTTAAATGTAGGGGACATAAACGTTTTCCTCGACATTCCGTTCATACACCCGTCAAGGAATTGAACTTTCGGGTCCAACTATGGAGGTGCCGCGCTTCTACCAGCTGAGCTACGGTGGTGCAAGCTGAGGTGCACGTGCCACGATAACAACACGCTGTGTGAACACTGAACAGTGTACATGATCTCAGAATGCATACCGCAACTCCAAGAAAACTTCTAAACTTTTCCTGTTTCCCCTCCTTTAAGAATCACACCACTTCAAGTTTGCAACAATTTTTCACATAAAAATGACGCTATCTTTTTTCTGGTATTTCCAATTTAATATATTCTCGAGAAATAAACAAAATTAGTGGTCTTAAGTTCATGTTATGTACTTGTCATTTTGTATCCCTCAATTTGTCAAAAAAATCCGAAAACATAAACAACTAACCGGTATTGAAAGGAAGATAGAATCCGCCTTTGACGATGTACAATGACTTCATTTTGGCCACATAAGCAAGTGTCTGAAAATAAAGCAATCAAA</canonical>
            <polymorphic>AATGCAGTAACCAATAGGAAAGCACTATCTCCTTCTCCATTCAAATAGTAAACGATGTCCTTAGCTTCCAGAAGTTCAGCTGGAGATGGAGTGTACCCGACGTATGCCAAAATGAGTGTTGGAATTCCAGCAATAACAGAAATGGTCGAGATGATAGGACCAAAGTGTTCGCGTTTATGAGCGTTGCTGAAAAATTTCAGGTTGGTTTAGGGTTGGAATCTAAAACAACTCTTACTCTGAGAGCACATGACATAACTGGAGGTATTGAACGGATGGAGAGCTGCAGGAAATGACAACGAAGAACACGAAAAGGATTAGGAAGATAATTCCTGAAAGTTACCGTTTTTTTCATTATTATATAGGAAGCCGTCAATTTTTCTAAAACTATTAGCTTTTTTGTTCGATAATCTTCAAAATTTTCAAAATCACATTTTTTTCATTTTGATATGTCTTCCCCGAAAATGAAGAGGTCGTGTTCTTAAATGTAGGGGACATAAACKTTTTCCTCGACATTCCGTTCATACACCCGTCAAGGAATTGAACTTTCGGGTCCAACTATGGAGGTGCCGCGCTTCTACCAGCTGAGCTACGGTGGTGCAAGCTGAGGTGCACGTGCCACGATAACAACACGCTGTGTGAACACTGAACAGTGTACATGATCTCAGAATGCATACCGCAACTCCAAGAAAACTTCTAAACTTTTCCTGTTTCCCCTCCTTTAAGAATCACACCACTTCAAGTTTGCAACAATTTTTCACATAAAAATGACGCTATCTTTTTTCTGGTATTTCCAATTTAATATATTCTCGAGAAATAAACAAAATTAGTGGTCTTAAGTTCATGTTATGTACTTGTCATTTTGTATCCCTCAATTTGTCAAAAAAATCCGAAAACATAAACAACTAACCGGTATTGAAAGGAAGATAGAATCCGCCTTTGACGATGTACAATGACTTCATTTTGGCCACATAAGCAAGTGTCTGAAAATAAAGCAATCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>398 389 113 100</canonical_bands>
                <polymorphic_bands>511 389 100</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATATGTCTTCCCCGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GGAAACAGGAAAAGTTTAGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>GATATGTCTTCCCCGAAAATGAAGAGGTCGTGTTCTTAAATGTAGGGGACATAAACGTTTTCCTCGACATTCCGTTCATACACCCGTCAAGGAATTGAACTTTCGGGTCCAACTATGGAGGTGCCGCGCTTCTACCAGCTGAGCTACGGTGGTGCAAGCTGAGGTGCACGTGCCACGATAACAACACGCTGTGTGAACACTGAACAGTGTACATGATCTCAGAATGCATACCGCAACTCCAAGAAAACTTCTAAACTTTTCCTGTTTCC</canonical_amplicon>
		<polymorphic_amplicon>GATATGTCTTCCCCGAAAATGAAGAGGTCGTGTTCTTAAATGTAGGGGACATAAACKTTTTCCTCGACATTCCGTTCATACACCCGTCAAGGAATTGAACTTTCGGGTCCAACTATGGAGGTGCCGCGCTTCTACCAGCTGAGCTACGGTGGTGCAAGCTGAGGTGCACGTGCCACGATAACAACACGCTGTGTGAACACTGAACAGTGTACATGATCTCAGAATGCATACCGCAACTCCAAGAAAACTTCTAAACTTTTCCTGTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6709</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>146289</contig_pos>
        <strand>+</strand>
        <context>ATTTGATAAA[A/G]AGGAACGGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGAACAAAAATAATCAGCCTTTATTATGATTTCTGATAATTTGATAAA</left_flank>
        <right_flank>AGGAACGGATTGAAAAGTAGTATATTGAGAATGGGTATTGATTTTGGTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCACAAAAACAAGGAAAAGAATTAAAAGGATACATCCAATGTCTATCGGTAAGTCAAAACCTCCCTTGGCAATGTAGAGAGCTTTTGTTTCATCCAAGTACATGACAGTCTGGAAGATTATTTGTTTCAACTAGTTTCATATATCAGAAACGCACCGGTGCTATAACAACTACCAATAAAGAAAACGCTAATCTGAAACAGCAGGCATAGTATTGAGTCCGTTTTACAGTATCCGAATAACTTTTTACTTTAATTTTTAAATAAACCAACAGGCAGTTTGCAAATAGAGAAATGAACCCGGAAATTCCGGCGTTAGCCTCTTCTAGCCAGGATTCCGTCGTAAAGTGTTCCATCCGGAAAAAAATAAGGAAATCCGAAGGAACTCTGATTTTTATAACAAACAACTGACTAGAGAATACTTGGAAATGCATATTTAGGGGTTTATTGTTTTGAACAAAAATAATCAGCCTTTATTATGATTTCTGATAATTTGATAAAAAGGAACGGATTGAAAAGTAGTATATTGAGAATGGGTATTGATTTTGGTTCTCTGAGTGGCTAATCCAGTATCAAACCTTTGGGTGGGAAATTTTTTGAAGAACCGGGGAGGTTCGGAATGGTCTTTTCGGAACATCGGAATATCGGAATTTCGAAAGTTTGCAATTTTTATGATTTTTGAAAAAAGTTAAGGTGTTGAACTCTTCCTGCCTAGGTAAGTCAGAACTACTCATGAAAAAAGACCTGATTCGGGAGTTCTGAATCATGATGCTCTAGGTGTAACATCTTGAAAAAATGATGTTTAAAAATTAAAGATCAAAGAATTAGATAAAAAAAAACACTATTTCAAGAACTGGAGATTTGAAAGACATTTATTTCATATATGGTTCTAGCGTTTTGAACGAAACCGTTTCTGATTTCAATGAAACTCGAACCATGACCAAATTCGCTAGAAATATTTATTACATCAGGCGTTAGGAATTTTAGGATTTTTTTTTCAGT</canonical>
            <polymorphic>ACCACAAAAACAAGGAAAAGAATTAAAAGGATACATCCAATGTCTATCGGTAAGTCAAAACCTCCCTTGGCAATGTAGAGAGCTTTTGTTTCATCCAAGTACATGACAGTCTGGAAGATTATTTGTTTCAACTAGTTTCATATATCAGAAACGCACCGGTGCTATAACAACTACCAATAAAGAAAACGCTAATCTGAAACAGCAGGCATAGTATTGAGTCCGTTTTACAGTATCCGAATAACTTTTTACTTTAATTTTTAAATAAACCAACAGGCAGTTTGCAAATAGAGAAATGAACCCGGAAATTCCGGCGTTAGCCTCTTCTAGCCAGGATTCCGTCGTAAAGTGTTCCATCCGGAAAAAAATAAGGAAATCCGAAGGAACTCTGATTTTTATAACAAACAACTGACTAGAGAATACTTGGAAATGCATATTTAGGGGTTTATTGTTTTGAACAAAAATAATCAGCCTTTATTATGATTTCTGATAATTTGATAAARAGGAACGGATTGAAAAGTAGTATATTGAGAATGGGTATTGATTTTGGTTCTCTGAGTGGCTAATCCAGTATCAAACCTTTGGGTGGGAAATTTTTTGAAGAACCGGGGAGGTTCGGAATGGTCTTTTCGGAACATCGGAATATCGGAATTTCGAAAGTTTGCAATTTTTATGATTTTTGAAAAAAGTTAAGGTGTTGAACTCTTCCTGCCTAGGTAAGTCAGAACTACTCATGAAAAAAGACCTGATTCGGGAGTTCTGAATCATGATGCTCTAGGTGTAACATCTTGAAAAAATGATGTTTAAAAATTAAAGATCAAAGAATTAGATAAAAAAAAACACTATTTCAAGAACTGGAGATTTGAAAGACATTTATTTCATATATGGTTCTAGCGTTTTGAACGAAACCGTTTCTGATTTCAATGAAACTCGAACCATGACCAAATTCGCTAGAAATATTTATTACATCAGGCGTTAGGAATTTTAGGATTTTTTTTTCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGCCTCTTCTAGCCAGGAT</pcr_primer_p1>
		<pcr_primer_p2>CACTCAGAGAACCAAAATCAATA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TAGCCTCTTCTAGCCAGGATTCCGTCGTAAAGTGTTCCATCCGGAAAAAAATAAGGAAATCCGAAGGAACTCTGATTTTTATAACAAACAACTGACTAGAGAATACTTGGAAATGCATATTTAGGGGTTTATTGTTTTGAACAAAAATAATCAGCCTTTATTATGATTTCTGATAATTTGATAAAAAGGAACGGATTGAAAAGTAGTATATTGAGAATGGGTATTGATTTTGGTTCTCTGAGTG</canonical_amplicon>
		<polymorphic_amplicon>TAGCCTCTTCTAGCCAGGATTCCGTCGTAAAGTGTTCCATCCGGAAAAAAATAAGGAAATCCGAAGGAACTCTGATTTTTATAACAAACAACTGACTAGAGAATACTTGGAAATGCATATTTAGGGGTTTATTGTTTTGAACAAAAATAATCAGCCTTTATTATGATTTCTGATAATTTGATAAARAGGAACGGATTGAAAAGTAGTATATTGAGAATGGGTATTGATTTTGGTTCTCTGAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6710</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>146523</contig_pos>
        <strand>+</strand>
        <context>ACTACTCATG[A/G]RAAAAGACCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTTAAGGTGTTGAACTCTTCCTGCCTAGGTAAGTCAGAACTACTCATG</left_flank>
        <right_flank>AAAAAGACCTGATTCGGGAGTTCTGAATCATGATGCTCTAGGTGTAACAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAATAACTTTTTACTTTAATTTTTAAATAAACCAACAGGCAGTTTGCAAATAGAGAAATGAACCCGGAAATTCCGGCGTTAGCCTCTTCTAGCCAGGATTCCGTCGTAAAGTGTTCCATCCGGAAAAAAATAAGGAAATCCGAAGGAACTCTGATTTTTATAACAAACAACTGACTAGAGAATACTTGGAAATGCATATTTAGGGGTTTATTGTTTTGAACAAAAATAATCAGCCTTTATTATGATTTCTGATAATTTGATAAAAAGGAACGGATTGAAAAGTAGTATATTGAGAATGGGTATTGATTTTGGTTCTCTGAGTGGCTAATCCAGTATCAAACCTTTGGGTGGGAAATTTTTTGAAGAACCGGGGAGGTTCGGAATGGTCTTTTCGGAACATCGGAATATCGGAATTTCGAAAGTTTGCAATTTTTATGATTTTTGAAAAAAGTTAAGGTGTTGAACTCTTCCTGCCTAGGTAAGTCAGAACTACTCATGAAAAAAGACCTGATTCGGGAGTTCTGAATCATGATGCTCTAGGTGTAACATCTTGAAAAAATGATGTTTAAAAATTAAAGATCAAAGAATTAGATAAAAAAAAACACTATTTCAAGAACTGGAGATTTGAAAGACATTTATTTCATATATGGTTCTAGCGTTTTGAACGAAACCGTTTCTGATTTCAATGAAACTCGAACCATGACCAAATTCGCTAGAAATATTTATTACATCAGGCGTTAGGAATTTTAGGATTTTTTTTTCAGTTTCAAATTTGAGATGCCCAATAGTTAGTTGCAACATATCTCAATTAACTACTATTGGTGATGAGTTGACTTCCTGACTAGGGAACCGGTCCTAGAATGAAAAATATGTATGGAAGTGGTAAATGTGGTTCCAGCCAACGAGTTTCCGTTTCTGTTGAGCAACTTATCACGGATGCTCTGAAATCACAATTTCCAAAAAAAAGAAAAATTGAAATACCTTAATCATACAAATCAC</canonical>
            <polymorphic>CGAATAACTTTTTACTTTAATTTTTAAATAAACCAACAGGCAGTTTGCAAATAGAGAAATGAACCCGGAAATTCCGGCGTTAGCCTCTTCTAGCCAGGATTCCGTCGTAAAGTGTTCCATCCGGAAAAAAATAAGGAAATCCGAAGGAACTCTGATTTTTATAACAAACAACTGACTAGAGAATACTTGGAAATGCATATTTAGGGGTTTATTGTTTTGAACAAAAATAATCAGCCTTTATTATGATTTCTGATAATTTGATAAAAAGGAACGGATTGAAAAGTAGTATATTGAGAATGGGTATTGATTTTGGTTCTCTGAGTGGCTAATCCAGTATCAAACCTTTGGGTGGGAAATTTTTTGAAGAACCGGGGAGGTTCGGAATGGTCTTTTCGGAACATCGGAATATCGGAATTTCGAAAGTTTGCAATTTTTATGATTTTTGAAAAAAGTTAAGGTGTTGAACTCTTCCTGCCTAGGTAAGTCAGAACTACTCATGRAAAAAGACCTGATTCGGGAGTTCTGAATCATGATGCTCTAGGTGTAACATCTTGAAAAAATGATGTTTAAAAATTAAAGATCAAAGAATTAGATAAAAAAAAACACTATTTCAAGAACTGGAGATTTGAAAGACATTTATTTCATATATGGTTCTAGCGTTTTGAACGAAACCGTTTCTGATTTCAATGAAACTCGAACCATGACCAAATTCGCTAGAAATATTTATTACATCAGGCGTTAGGAATTTTAGGATTTTTTTTTCAGTTTCAAATTTGAGATGCCCAATAGTTAGTTGCAACATATCTCAATTAACTACTATTGGTGATGAGTTGACTTCCTGACTAGGGAACCGGTCCTAGAATGAAAAATATGTATGGAAGTGGTAAATGTGGTTCCAGCCAACGAGTTTCCGTTTCTGTTGAGCAACTTATCACGGATGCTCTGAAATCACAATTTCCAAAAAAAAGAAAAATTGAAATACCTTAATCATACAAATCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>495 472 33</canonical_bands>
                <polymorphic_bands>528 472</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>375 226 162 121 61 22 19 14</canonical_bands>
                <polymorphic_bands>394 226 162 121 61 22 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCTAATCCAGTATCAAACCT</pcr_primer_p1>
		<pcr_primer_p2>CAAATCTCCAGTTCTTGAAATAGT</pcr_primer_p2>
		<pcr_amplicon_size>305</pcr_amplicon_size>
		<canonical_amplicon>GGCTAATCCAGTATCAAACCTTTGGGTGGGAAATTTTTTGAAGAACCGGGGAGGTTCGGAATGGTCTTTTCGGAACATCGGAATATCGGAATTTCGAAAGTTTGCAATTTTTATGATTTTTGAAAAAAGTTAAGGTGTTGAACTCTTCCTGCCTAGGTAAGTCAGAACTACTCATGAAAAAAGACCTGATTCGGGAGTTCTGAATCATGATGCTCTAGGTGTAACATCTTGAAAAAATGATGTTTAAAAATTAAAGATCAAAGAATTAGATAAAAAAAAACACTATTTCAAGAACTGGAGATTTG</canonical_amplicon>
		<polymorphic_amplicon>GGCTAATCCAGTATCAAACCTTTGGGTGGGAAATTTTTTGAAGAACCGGGGAGGTTCGGAATGGTCTTTTCGGAACATCGGAATATCGGAATTTCGAAAGTTTGCAATTTTTATGATTTTTGAAAAAAGTTAAGGTGTTGAACTCTTCCTGCCTAGGTAAGTCAGAACTACTCATGRAAAAAGACCTGATTCGGGAGTTCTGAATCATGATGCTCTAGGTGTAACATCTTGAAAAAATGATGTTTAAAAATTAAAGATCAAAGAATTAGATAAAAAAAAACACTATTTCAAGAACTGGAGATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6711</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>146524</contig_pos>
        <strand>+</strand>
        <context>CTACTCATGR[A/G]AAAAGACCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTAAGGTGTTGAACTCTTCCTGCCTAGGTAAGTCAGAACTACTCATGA</left_flank>
        <right_flank>AAAAGACCTGATTCGGGAGTTCTGAATCATGATGCTCTAGGTGTAACATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATAACTTTTTACTTTAATTTTTAAATAAACCAACAGGCAGTTTGCAAATAGAGAAATGAACCCGGAAATTCCGGCGTTAGCCTCTTCTAGCCAGGATTCCGTCGTAAAGTGTTCCATCCGGAAAAAAATAAGGAAATCCGAAGGAACTCTGATTTTTATAACAAACAACTGACTAGAGAATACTTGGAAATGCATATTTAGGGGTTTATTGTTTTGAACAAAAATAATCAGCCTTTATTATGATTTCTGATAATTTGATAAAAAGGAACGGATTGAAAAGTAGTATATTGAGAATGGGTATTGATTTTGGTTCTCTGAGTGGCTAATCCAGTATCAAACCTTTGGGTGGGAAATTTTTTGAAGAACCGGGGAGGTTCGGAATGGTCTTTTCGGAACATCGGAATATCGGAATTTCGAAAGTTTGCAATTTTTATGATTTTTGAAAAAAGTTAAGGTGTTGAACTCTTCCTGCCTAGGTAAGTCAGAACTACTCATGAAAAAAGACCTGATTCGGGAGTTCTGAATCATGATGCTCTAGGTGTAACATCTTGAAAAAATGATGTTTAAAAATTAAAGATCAAAGAATTAGATAAAAAAAAACACTATTTCAAGAACTGGAGATTTGAAAGACATTTATTTCATATATGGTTCTAGCGTTTTGAACGAAACCGTTTCTGATTTCAATGAAACTCGAACCATGACCAAATTCGCTAGAAATATTTATTACATCAGGCGTTAGGAATTTTAGGATTTTTTTTTCAGTTTCAAATTTGAGATGCCCAATAGTTAGTTGCAACATATCTCAATTAACTACTATTGGTGATGAGTTGACTTCCTGACTAGGGAACCGGTCCTAGAATGAAAAATATGTATGGAAGTGGTAAATGTGGTTCCAGCCAACGAGTTTCCGTTTCTGTTGAGCAACTTATCACGGATGCTCTGAAATCACAATTTCCAAAAAAAAGAAAAATTGAAATACCTTAATCATACAAATCACC</canonical>
            <polymorphic>GAATAACTTTTTACTTTAATTTTTAAATAAACCAACAGGCAGTTTGCAAATAGAGAAATGAACCCGGAAATTCCGGCGTTAGCCTCTTCTAGCCAGGATTCCGTCGTAAAGTGTTCCATCCGGAAAAAAATAAGGAAATCCGAAGGAACTCTGATTTTTATAACAAACAACTGACTAGAGAATACTTGGAAATGCATATTTAGGGGTTTATTGTTTTGAACAAAAATAATCAGCCTTTATTATGATTTCTGATAATTTGATAAAAAGGAACGGATTGAAAAGTAGTATATTGAGAATGGGTATTGATTTTGGTTCTCTGAGTGGCTAATCCAGTATCAAACCTTTGGGTGGGAAATTTTTTGAAGAACCGGGGAGGTTCGGAATGGTCTTTTCGGAACATCGGAATATCGGAATTTCGAAAGTTTGCAATTTTTATGATTTTTGAAAAAAGTTAAGGTGTTGAACTCTTCCTGCCTAGGTAAGTCAGAACTACTCATGARAAAAGACCTGATTCGGGAGTTCTGAATCATGATGCTCTAGGTGTAACATCTTGAAAAAATGATGTTTAAAAATTAAAGATCAAAGAATTAGATAAAAAAAAACACTATTTCAAGAACTGGAGATTTGAAAGACATTTATTTCATATATGGTTCTAGCGTTTTGAACGAAACCGTTTCTGATTTCAATGAAACTCGAACCATGACCAAATTCGCTAGAAATATTTATTACATCAGGCGTTAGGAATTTTAGGATTTTTTTTTCAGTTTCAAATTTGAGATGCCCAATAGTTAGTTGCAACATATCTCAATTAACTACTATTGGTGATGAGTTGACTTCCTGACTAGGGAACCGGTCCTAGAATGAAAAATATGTATGGAAGTGGTAAATGTGGTTCCAGCCAACGAGTTTCCGTTTCTGTTGAGCAACTTATCACGGATGCTCTGAAATCACAATTTCCAAAAAAAAGAAAAATTGAAATACCTTAATCATACAAATCACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCTAATCCAGTATCAAACCT</pcr_primer_p1>
		<pcr_primer_p2>CAAATCTCCAGTTCTTGAAATAGT</pcr_primer_p2>
		<pcr_amplicon_size>305</pcr_amplicon_size>
		<canonical_amplicon>GGCTAATCCAGTATCAAACCTTTGGGTGGGAAATTTTTTGAAGAACCGGGGAGGTTCGGAATGGTCTTTTCGGAACATCGGAATATCGGAATTTCGAAAGTTTGCAATTTTTATGATTTTTGAAAAAAGTTAAGGTGTTGAACTCTTCCTGCCTAGGTAAGTCAGAACTACTCATGAAAAAAGACCTGATTCGGGAGTTCTGAATCATGATGCTCTAGGTGTAACATCTTGAAAAAATGATGTTTAAAAATTAAAGATCAAAGAATTAGATAAAAAAAAACACTATTTCAAGAACTGGAGATTTG</canonical_amplicon>
		<polymorphic_amplicon>GGCTAATCCAGTATCAAACCTTTGGGTGGGAAATTTTTTGAAGAACCGGGGAGGTTCGGAATGGTCTTTTCGGAACATCGGAATATCGGAATTTCGAAAGTTTGCAATTTTTATGATTTTTGAAAAAAGTTAAGGTGTTGAACTCTTCCTGCCTAGGTAAGTCAGAACTACTCATGARAAAAGACCTGATTCGGGAGTTCTGAATCATGATGCTCTAGGTGTAACATCTTGAAAAAATGATGTTTAAAAATTAAAGATCAAAGAATTAGATAAAAAAAAACACTATTTCAAGAACTGGAGATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6713</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>147382</contig_pos>
        <strand>+</strand>
        <context>CCGATATAAT[A/G]AGCTTTCCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTGACAATTAACTTTTAGACAGGGGAGTGACACTAAATCCGATATAAT</left_flank>
        <right_flank>AGCTTTCCAAACCCCACCTGTACAAATAACAAGAGATTCAATTGCTTCTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATGAAAAATATGTATGGAAGTGGTAAATGTGGTTCCAGCCAACGAGTTTCCGTTTCTGTTGAGCAACTTATCACGGATGCTCTGAAATCACAATTTCCAAAAAAAAGAAAAATTGAAATACCTTAATCATACAAATCACCATAATCGGATTGATCGCTGGACACCAAGCAAACATATACGGTAATTTTGAAGATATGTTATTCAGTTCAATGTCAGCAAACGGGAGGATGAATGCAACGTAGAAGGGGATGTGAATAGTAATGAACGGGAAGATGAACTGAAAACTTTTAGAATTACAGTTTCAGAAAATCGACAATCATGGAGGAAATGACTTTAGATATTGAGATAGCTACCCAAATTTTAAGTTTACAAAGTTTCCAGAAGGTTTCGAAAGTTGACTCCGAGGTTCTTAAAAAAACGTTTTTTTTTTCAATTTCAGTTTTAAAAAAGTGACAATTAACTTTTAGACAGGGGAGTGACACTAAATCCGATATAATGAGCTTTCCAAACCCCACCTGTACAAATAACAAGAGATTCAATTGCTTCTGTGATTTCTGATTACTAATTGACGTTTTCTTTTTTCTTGATACTTGCATTTTTATAAAACACACAATCACCACAATCAATGACGAGAACATCGCTAAGAATATGAACCAGTGCACATTCTGGCGGGAATATCATACATGAACGTTCCGGAAGCATGATCATAAATCTGGAAATTTATTACTGTTTTCAGAAGTTTTTATTTTCGATGTTTCCGAACAGTGACAATAAAAGTGCTTATTCTACAGTAAACTAAAAGAGGTTCAGCTCCGATGCAACAGTGCCTTCAAAGTTTCCCGGTTTGATTAGTTTCAAGTAGAAAGAAAGATTCGGCTGAACTTCAATGTTTTTCAAAGGTTTTTTGAGTCATAAAGTTTGGACGGAAATTAATTAGACAAGTCAGAATATTTTAAATTTTTCTTAAATCGAGTTTGAAAAATTTCACATTTTGAGAT</canonical>
            <polymorphic>GAATGAAAAATATGTATGGAAGTGGTAAATGTGGTTCCAGCCAACGAGTTTCCGTTTCTGTTGAGCAACTTATCACGGATGCTCTGAAATCACAATTTCCAAAAAAAAGAAAAATTGAAATACCTTAATCATACAAATCACCATAATCGGATTGATCGCTGGACACCAAGCAAACATATACGGTAATTTTGAAGATATGTTATTCAGTTCAATGTCAGCAAACGGGAGGATGAATGCAACGTAGAAGGGGATGTGAATAGTAATGAACGGGAAGATGAACTGAAAACTTTTAGAATTACAGTTTCAGAAAATCGACAATCATGGAGGAAATGACTTTAGATATTGAGATAGCTACCCAAATTTTAAGTTTACAAAGTTTCCAGAAGGTTTCGAAAGTTGACTCCGAGGTTCTTAAAAAAACGTTTTTTTTTTCAATTTCAGTTTTAAAAAAGTGACAATTAACTTTTAGACAGGGGAGTGACACTAAATCCGATATAATRAGCTTTCCAAACCCCACCTGTACAAATAACAAGAGATTCAATTGCTTCTGTGATTTCTGATTACTAATTGACGTTTTCTTTTTTCTTGATACTTGCATTTTTATAAAACACACAATCACCACAATCAATGACGAGAACATCGCTAAGAATATGAACCAGTGCACATTCTGGCGGGAATATCATACATGAACGTTCCGGAAGCATGATCATAAATCTGGAAATTTATTACTGTTTTCAGAAGTTTTTATTTTCGATGTTTCCGAACAGTGACAATAAAAGTGCTTATTCTACAGTAAACTAAAAGAGGTTCAGCTCCGATGCAACAGTGCCTTCAAAGTTTCCCGGTTTGATTAGTTTCAAGTAGAAAGAAAGATTCGGCTGAACTTCAATGTTTTTCAAAGGTTTTTTGAGTCATAAAGTTTGGACGGAAATTAATTAGACAAGTCAGAATATTTTAAATTTTTCTTAAATCGAGTTTGAAAAATTTCACATTTTGAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTTACAAAGTTTCCAGAAGGT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATGCAAGTATCAAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>AGTTTACAAAGTTTCCAGAAGGTTTCGAAAGTTGACTCCGAGGTTCTTAAAAAAACGTTTTTTTTTTCAATTTCAGTTTTAAAAAAGTGACAATTAACTTTTAGACAGGGGAGTGACACTAAATCCGATATAATGAGCTTTCCAAACCCCACCTGTACAAATAACAAGAGATTCAATTGCTTCTGTGATTTCTGATTACTAATTGACGTTTTCTTTTTTCTTGATACTTGCATTTTT</canonical_amplicon>
		<polymorphic_amplicon>AGTTTACAAAGTTTCCAGAAGGTTTCGAAAGTTGACTCCGAGGTTCTTAAAAAAACGTTTTTTTTTTCAATTTCAGTTTTAAAAAAGTGACAATTAACTTTTAGACAGGGGAGTGACACTAAATCCGATATAATRAGCTTTCCAAACCCCACCTGTACAAATAACAAGAGATTCAATTGCTTCTGTGATTTCTGATTACTAATTGACGTTTTCTTTTTTCTTGATACTTGCATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6714</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>148303</contig_pos>
        <strand>+</strand>
        <context>CATTTTAAGT[A/G]AAGCCAGGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACTAAATATTTTTTTTCTCTCCGGTTTTGAGATTCGAACATTTTAAGT</left_flank>
        <right_flank>AAGCCAGGAGATTGTAGCCGCCGATAGGCGGAAATTGACTGGTTCTACAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGACGGAAATTAATTAGACAAGTCAGAATATTTTAAATTTTTCTTAAATCGAGTTTGAAAAATTTCACATTTTGAGATTGTTAATTCAGAAATTTCCAAATTTCTCATTTTCCGAATCTTCAGAAAAATAACTTTAGGAAGTAAGAAATCTGGGAATACGAGATTCTGGGAAATAAGAAATTTGGAAGTGAAGAAATTAGTGAATTCGATAATTCGAATTGTCTGAAATCCAGAATATTACTAACTTCCAAATATCTTATAATTTTCCAAATTCTCGAAGCTCTGAACATCATGATCTCCAGAATGATAAATTCCGAAATTACAGGAATTCCAAGTTTCAGAATTAAGAATTTCATAAACTCTGAATGATTAAGCTATCAATTTTCTTATTTTAGATCCGGAAAACATTTTTTTTAAATGGAAGTTAATAATTGCTCACAATCGATTAAAACTAAATATTTTTTTTCTCTCCGGTTTTGAGATTCGAACATTTTAAGTAAAGCCAGGAGATTGTAGCCGCCGATAGGCGGAAATTGACTGGTTCTACAGTAAATTAATTCAATATCTAGAATTTGCTCACCATTTCCTCGGATTCTATCAGAAAAGCGTTGTTATTCTCTCCTGTTATCTCCTGAATCAAATCCTTTGAAATCTCCTTCTCGTATTCATTAGGCATGTATCCATTAAAAATCAAAATGGAAGTAGGAATCGCTACGAACAATGGAATCAAAGTGATCATTGCCCGTAGTACAGAATGATTTTTCAGGACCGGACTGCAAAAAAAAATTACAAGTAAAGTTATCCGGACAGAACGCTTACCTCGATAATAAATATGTGATTTTAAGGTACTGTACAGCTGGTCCAGTACAAGAAGTAACCACGAAGACTAGAAAGAGATTCAAAAGAATACAACCGATGTTGGTTGCTATCTTAATCCCTCCTTTGACAATGAAGAGAGATTTTACTTCATTCAAGTACATGATAGTCTGGAAGACAGGG</canonical>
            <polymorphic>TGGACGGAAATTAATTAGACAAGTCAGAATATTTTAAATTTTTCTTAAATCGAGTTTGAAAAATTTCACATTTTGAGATTGTTAATTCAGAAATTTCCAAATTTCTCATTTTCCGAATCTTCAGAAAAATAACTTTAGGAAGTAAGAAATCTGGGAATACGAGATTCTGGGAAATAAGAAATTTGGAAGTGAAGAAATTAGTGAATTCGATAATTCGAATTGTCTGAAATCCAGAATATTACTAACTTCCAAATATCTTATAATTTTCCAAATTCTCGAAGCTCTGAACATCATGATCTCCAGAATGATAAATTCCGAAATTACAGGAATTCCAAGTTTCAGAATTAAGAATTTCATAAACTCTGAATGATTAAGCTATCAATTTTCTTATTTTAGATCCGGAAAACATTTTTTTTAAATGGAAGTTAATAATTGCTCACAATCGATTAAAACTAAATATTTTTTTTCTCTCCGGTTTTGAGATTCGAACATTTTAAGTRAAGCCAGGAGATTGTAGCCGCCGATAGGCGGAAATTGACTGGTTCTACAGTAAATTAATTCAATATCTAGAATTTGCTCACCATTTCCTCGGATTCTATCAGAAAAGCGTTGTTATTCTCTCCTGTTATCTCCTGAATCAAATCCTTTGAAATCTCCTTCTCGTATTCATTAGGCATGTATCCATTAAAAATCAAAATGGAAGTAGGAATCGCTACGAACAATGGAATCAAAGTGATCATTGCCCGTAGTACAGAATGATTTTTCAGGACCGGACTGCAAAAAAAAATTACAAGTAAAGTTATCCGGACAGAACGCTTACCTCGATAATAAATATGTGATTTTAAGGTACTGTACAGCTGGTCCAGTACAAGAAGTAACCACGAAGACTAGAAAGAGATTCAAAAGAATACAACCGATGTTGGTTGCTATCTTAATCCCTCCTTTGACAATGAAGAGAGATTTTACTTCATTCAAGTACATGATAGTCTGGAAGACAGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCACAATCGATTAAAACTAAA</pcr_primer_p1>
		<pcr_primer_p2>ATGGATACATGCCTAATGAATAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCTCACAATCGATTAAAACTAAATATTTTTTTTCTCTCCGGTTTTGAGATTCGAACATTTTAAGTAAAGCCAGGAGATTGTAGCCGCCGATAGGCGGAAATTGACTGGTTCTACAGTAAATTAATTCAATATCTAGAATTTGCTCACCATTTCCTCGGATTCTATCAGAAAAGCGTTGTTATTCTCTCCTGTTATCTCCTGAATCAAATCCTTTGAAATCTCCTTCTCGTATTCATTAGGCATGTATCCAT</canonical_amplicon>
		<polymorphic_amplicon>GCTCACAATCGATTAAAACTAAATATTTTTTTTCTCTCCGGTTTTGAGATTCGAACATTTTAAGTRAAGCCAGGAGATTGTAGCCGCCGATAGGCGGAAATTGACTGGTTCTACAGTAAATTAATTCAATATCTAGAATTTGCTCACCATTTCCTCGGATTCTATCAGAAAAGCGTTGTTATTCTCTCCTGTTATCTCCTGAATCAAATCCTTTGAAATCTCCTTCTCGTATTCATTAGGCATGTATCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6715</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>148267</contig_pos>
        <strand>+</strand>
        <context>TAAATATTTT[C/T]TTTCTCTCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTAAATGGAAGTTAATAATTGCTCACAATCGATTAAAACTAAATATTTT</left_flank>
        <right_flank>TTTCTCTCCGGTTTTGAGATTCGAACATTTTAAGTAAAGCCAGGAGATTG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAATGTTTTTCAAAGGTTTTTTGAGTCATAAAGTTTGGACGGAAATTAATTAGACAAGTCAGAATATTTTAAATTTTTCTTAAATCGAGTTTGAAAAATTTCACATTTTGAGATTGTTAATTCAGAAATTTCCAAATTTCTCATTTTCCGAATCTTCAGAAAAATAACTTTAGGAAGTAAGAAATCTGGGAATACGAGATTCTGGGAAATAAGAAATTTGGAAGTGAAGAAATTAGTGAATTCGATAATTCGAATTGTCTGAAATCCAGAATATTACTAACTTCCAAATATCTTATAATTTTCCAAATTCTCGAAGCTCTGAACATCATGATCTCCAGAATGATAAATTCCGAAATTACAGGAATTCCAAGTTTCAGAATTAAGAATTTCATAAACTCTGAATGATTAAGCTATCAATTTTCTTATTTTAGATCCGGAAAACATTTTTTTTAAATGGAAGTTAATAATTGCTCACAATCGATTAAAACTAAATATTTTTTTTCTCTCCGGTTTTGAGATTCGAACATTTTAAGTAAAGCCAGGAGATTGTAGCCGCCGATAGGCGGAAATTGACTGGTTCTACAGTAAATTAATTCAATATCTAGAATTTGCTCACCATTTCCTCGGATTCTATCAGAAAAGCGTTGTTATTCTCTCCTGTTATCTCCTGAATCAAATCCTTTGAAATCTCCTTCTCGTATTCATTAGGCATGTATCCATTAAAAATCAAAATGGAAGTAGGAATCGCTACGAACAATGGAATCAAAGTGATCATTGCCCGTAGTACAGAATGATTTTTCAGGACCGGACTGCAAAAAAAAATTACAAGTAAAGTTATCCGGACAGAACGCTTACCTCGATAATAAATATGTGATTTTAAGGTACTGTACAGCTGGTCCAGTACAAGAAGTAACCACGAAGACTAGAAAGAGATTCAAAAGAATACAACCGATGTTGGTTGCTATCTTAATCCCTCCTTTGACAATGAAGAGAGATTTT</canonical>
            <polymorphic>TCAATGTTTTTCAAAGGTTTTTTGAGTCATAAAGTTTGGACGGAAATTAATTAGACAAGTCAGAATATTTTAAATTTTTCTTAAATCGAGTTTGAAAAATTTCACATTTTGAGATTGTTAATTCAGAAATTTCCAAATTTCTCATTTTCCGAATCTTCAGAAAAATAACTTTAGGAAGTAAGAAATCTGGGAATACGAGATTCTGGGAAATAAGAAATTTGGAAGTGAAGAAATTAGTGAATTCGATAATTCGAATTGTCTGAAATCCAGAATATTACTAACTTCCAAATATCTTATAATTTTCCAAATTCTCGAAGCTCTGAACATCATGATCTCCAGAATGATAAATTCCGAAATTACAGGAATTCCAAGTTTCAGAATTAAGAATTTCATAAACTCTGAATGATTAAGCTATCAATTTTCTTATTTTAGATCCGGAAAACATTTTTTTTAAATGGAAGTTAATAATTGCTCACAATCGATTAAAACTAAATATTTTYTTTCTCTCCGGTTTTGAGATTCGAACATTTTAAGTAAAGCCAGGAGATTGTAGCCGCCGATAGGCGGAAATTGACTGGTTCTACAGTAAATTAATTCAATATCTAGAATTTGCTCACCATTTCCTCGGATTCTATCAGAAAAGCGTTGTTATTCTCTCCTGTTATCTCCTGAATCAAATCCTTTGAAATCTCCTTCTCGTATTCATTAGGCATGTATCCATTAAAAATCAAAATGGAAGTAGGAATCGCTACGAACAATGGAATCAAAGTGATCATTGCCCGTAGTACAGAATGATTTTTCAGGACCGGACTGCAAAAAAAAATTACAAGTAAAGTTATCCGGACAGAACGCTTACCTCGATAATAAATATGTGATTTTAAGGTACTGTACAGCTGGTCCAGTACAAGAAGTAACCACGAAGACTAGAAAGAGATTCAAAAGAATACAACCGATGTTGGTTGCTATCTTAATCCCTCCTTTGACAATGAAGAGAGATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAGAATATTACTAACTTCCAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTACTGTAGAACCAGTCAATTTC</pcr_primer_p2>
		<pcr_amplicon_size>325</pcr_amplicon_size>
		<canonical_amplicon>TCCAGAATATTACTAACTTCCAAATATCTTATAATTTTCCAAATTCTCGAAGCTCTGAACATCATGATCTCCAGAATGATAAATTCCGAAATTACAGGAATTCCAAGTTTCAGAATTAAGAATTTCATAAACTCTGAATGATTAAGCTATCAATTTTCTTATTTTAGATCCGGAAAACATTTTTTTTAAATGGAAGTTAATAATTGCTCACAATCGATTAAAACTAAATATTTTTTTTCTCTCCGGTTTTGAGATTCGAACATTTTAAGTAAAGCCAGGAGATTGTAGCCGCCGATAGGCGGAAATTGACTGGTTCTACAGTAAA</canonical_amplicon>
		<polymorphic_amplicon>TCCAGAATATTACTAACTTCCAAATATCTTATAATTTTCCAAATTCTCGAAGCTCTGAACATCATGATCTCCAGAATGATAAATTCCGAAATTACAGGAATTCCAAGTTTCAGAATTAAGAATTTCATAAACTCTGAATGATTAAGCTATCAATTTTCTTATTTTAGATCCGGAAAACATTTTTTTTAAATGGAAGTTAATAATTGCTCACAATCGATTAAAACTAAATATTTTYTTTCTCTCCGGTTTTGAGATTCGAACATTTTAAGTAAAGCCAGGAGATTGTAGCCGCCGATAGGCGGAAATTGACTGGTTCTACAGTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6716</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>161729</contig_pos>
        <strand>+</strand>
        <context>TTTTTATTTW[A/T]AGGTTTCGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCAGGATCCAAATTCGTATTAAAAAGTCATCCGGAAAATTTTTATTTA</left_flank>
        <right_flank>AGGTTTCGGGATATCAAAAAAATAAATATTCGAAATTTTGCCGAAAAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCATCAATTTGAACTCTTGTTGACCATTGAAGTGTAAACCAATTTTAGTTCATGTGTTCTCGTTTTTTTTCGATTTTTGTTCAAAAATAGCCAAGCTAATTTTTTCAGAAGCATGGATTTTTGTGGTCGGCCAATTGAACCATCAACAAGTCGATCACCGACTCCAGATTACCGATTCAGAGTGTACCTACCGCCAGGAAAGTCTTACGATATGACTCTGTGGACCGTAAGTTTCTTTTTTACAAAAACGGGCTCAGTTTTTTTCTGATCGATTTGTTCTGTCAATTGATTTCCCTCGGGTTACCCATTCACACGGCACTCCTTCTGCCAGCTGTGGCCTGATTGAGGACCCATTGTCTACCCATCTTCGTGCAATACAGGGACTCTTTTCGCGAATTTTATACCCTCAAAAGCGCTTTAGCTGCCAATCCAATGCTCTTTCAAAATTTCAGGATCCAAATTCGTATTAAAAAGTCATCCGGAAAATTTTTATTTATAGGTTTCGGGATATCAAAAAAATAAATATTCGAAATTTTGCCGAAAAAATCGCCTTGAGGCAATTGTCTCGCGGAAAAAAATCTAGAGGTCAGGCGTCACTACCGGCTGAACTACCGCATTTCCAACTTTGAACGCTATGCACGAAACTTTGTATTGCCCTACATACCTTCAGAATTCTAACAAAAATTAAAGGGAGAAAATTCCTGTTCAATTCATATTAGATTGAGCTCAATACGTTGGCGTCCAGAGACTTGAATATTCACACAAAACATTTGGTTTCTGTGGGAATTTCAAGGAAAAAAAATGAAATGCAAACATGCTTCCCAAAACAGTAAAAATCAGAAAAAGAAATGAAAAAATCTCAAATTCTTTTATTTCCAGAAAAATGACGTCTTCCGGTGGATGACAATATTCATGCCGGTGACTCAACACACCGAGACATACATCGCATTAAAGGAGCTTTACCTAGACGGAGATGTGCTCTGTGCAATTATTAACG</canonical>
            <polymorphic>TTTTCATCAATTTGAACTCTTGTTGACCATTGAAGTGTAAACCAATTTTAGTTCATGTGTTCTCGTTTTTTTTCGATTTTTGTTCAAAAATAGCCAAGCTAATTTTTTCAGAAGCATGGATTTTTGTGGTCGGCCAATTGAACCATCAACAAGTCGATCACCGACTCCAGATTACCGATTCAGAGTGTACCTACCGCCAGGAAAGTCTTACGATATGACTCTGTGGACCGTAAGTTTCTTTTTTACAAAAACGGGCTCAGTTTTTTTCTGATCGATTTGTTCTGTCAATTGATTTCCCTCGGGTTACCCATTCACACGGCACTCCTTCTGCCAGCTGTGGCCTGATTGAGGACCCATTGTCTACCCATCTTCGTGCAATACAGGGACTCTTTTCGCGAATTTTATACCCTCAAAAGCGCTTTAGCTGCCAATCCAATGCTCTTTCAAAATTTCAGGATCCAAATTCGTATTAAAAAGTCATCCGGAAAATTTTTATTTAWAGGTTTCGGGATATCAAAAAAATAAATATTCGAAATTTTGCCGAAAAAATCGCCTTGAGGCAATTGTCTCGCGGAAAAAAATCTAGAGGTCAGGCGTCACTACCGGCTGAACTACCGCATTTCCAACTTTGAACGCTATGCACGAAACTTTGTATTGCCCTACATACCTTCAGAATTCTAACAAAAATTAAAGGGAGAAAATTCCTGTTCAATTCATATTAGATTGAGCTCAATACGTTGGCGTCCAGAGACTTGAATATTCACACAAAACATTTGGTTTCTGTGGGAATTTCAAGGAAAAAAAATGAAATGCAAACATGCTTCCCAAAACAGTAAAAATCAGAAAAAGAAATGAAAAAATCTCAAATTCTTTTATTTCCAGAAAAATGACGTCTTCCGGTGGATGACAATATTCATGCCGGTGACTCAACACACCGAGACATACATCGCATTAAAGGAGCTTTACCTAGACGGAGATGTGCTCTGTGCAATTATTAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGAATTTTATACCCTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATAGCGTTCAAAGTTGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GCGAATTTTATACCCTCAAAAGCGCTTTAGCTGCCAATCCAATGCTCTTTCAAAATTTCAGGATCCAAATTCGTATTAAAAAGTCATCCGGAAAATTTTTATTTATAGGTTTCGGGATATCAAAAAAATAAATATTCGAAATTTTGCCGAAAAAATCGCCTTGAGGCAATTGTCTCGCGGAAAAAAATCTAGAGGTCAGGCGTCACTACCGGCTGAACTACCGCATTTCCAACTTTGAACGCTAT</canonical_amplicon>
		<polymorphic_amplicon>GCGAATTTTATACCCTCAAAAGCGCTTTAGCTGCCAATCCAATGCTCTTTCAAAATTTCAGGATCCAAATTCGTATTAAAAAGTCATCCGGAAAATTTTTATTTAWAGGTTTCGGGATATCAAAAAAATAAATATTCGAAATTTTGCCGAAAAAATCGCCTTGAGGCAATTGTCTCGCGGAAAAAAATCTAGAGGTCAGGCGTCACTACCGGCTGAACTACCGCATTTCCAACTTTGAACGCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6717</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>161728</contig_pos>
        <strand>+</strand>
        <context>ATTTTTATTT[A/T]WAGGTTTCGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTCAGGATCCAAATTCGTATTAAAAAGTCATCCGGAAAATTTTTATTT</left_flank>
        <right_flank>TAGGTTTCGGGATATCAAAAAAATAAATATTCGAAATTTTGCCGAAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCATCAATTTGAACTCTTGTTGACCATTGAAGTGTAAACCAATTTTAGTTCATGTGTTCTCGTTTTTTTTCGATTTTTGTTCAAAAATAGCCAAGCTAATTTTTTCAGAAGCATGGATTTTTGTGGTCGGCCAATTGAACCATCAACAAGTCGATCACCGACTCCAGATTACCGATTCAGAGTGTACCTACCGCCAGGAAAGTCTTACGATATGACTCTGTGGACCGTAAGTTTCTTTTTTACAAAAACGGGCTCAGTTTTTTTCTGATCGATTTGTTCTGTCAATTGATTTCCCTCGGGTTACCCATTCACACGGCACTCCTTCTGCCAGCTGTGGCCTGATTGAGGACCCATTGTCTACCCATCTTCGTGCAATACAGGGACTCTTTTCGCGAATTTTATACCCTCAAAAGCGCTTTAGCTGCCAATCCAATGCTCTTTCAAAATTTCAGGATCCAAATTCGTATTAAAAAGTCATCCGGAAAATTTTTATTTATAGGTTTCGGGATATCAAAAAAATAAATATTCGAAATTTTGCCGAAAAAATCGCCTTGAGGCAATTGTCTCGCGGAAAAAAATCTAGAGGTCAGGCGTCACTACCGGCTGAACTACCGCATTTCCAACTTTGAACGCTATGCACGAAACTTTGTATTGCCCTACATACCTTCAGAATTCTAACAAAAATTAAAGGGAGAAAATTCCTGTTCAATTCATATTAGATTGAGCTCAATACGTTGGCGTCCAGAGACTTGAATATTCACACAAAACATTTGGTTTCTGTGGGAATTTCAAGGAAAAAAAATGAAATGCAAACATGCTTCCCAAAACAGTAAAAATCAGAAAAAGAAATGAAAAAATCTCAAATTCTTTTATTTCCAGAAAAATGACGTCTTCCGGTGGATGACAATATTCATGCCGGTGACTCAACACACCGAGACATACATCGCATTAAAGGAGCTTTACCTAGACGGAGATGTGCTCTGTGCAATTATTAAC</canonical>
            <polymorphic>TTTTTCATCAATTTGAACTCTTGTTGACCATTGAAGTGTAAACCAATTTTAGTTCATGTGTTCTCGTTTTTTTTCGATTTTTGTTCAAAAATAGCCAAGCTAATTTTTTCAGAAGCATGGATTTTTGTGGTCGGCCAATTGAACCATCAACAAGTCGATCACCGACTCCAGATTACCGATTCAGAGTGTACCTACCGCCAGGAAAGTCTTACGATATGACTCTGTGGACCGTAAGTTTCTTTTTTACAAAAACGGGCTCAGTTTTTTTCTGATCGATTTGTTCTGTCAATTGATTTCCCTCGGGTTACCCATTCACACGGCACTCCTTCTGCCAGCTGTGGCCTGATTGAGGACCCATTGTCTACCCATCTTCGTGCAATACAGGGACTCTTTTCGCGAATTTTATACCCTCAAAAGCGCTTTAGCTGCCAATCCAATGCTCTTTCAAAATTTCAGGATCCAAATTCGTATTAAAAAGTCATCCGGAAAATTTTTATTTWTAGGTTTCGGGATATCAAAAAAATAAATATTCGAAATTTTGCCGAAAAAATCGCCTTGAGGCAATTGTCTCGCGGAAAAAAATCTAGAGGTCAGGCGTCACTACCGGCTGAACTACCGCATTTCCAACTTTGAACGCTATGCACGAAACTTTGTATTGCCCTACATACCTTCAGAATTCTAACAAAAATTAAAGGGAGAAAATTCCTGTTCAATTCATATTAGATTGAGCTCAATACGTTGGCGTCCAGAGACTTGAATATTCACACAAAACATTTGGTTTCTGTGGGAATTTCAAGGAAAAAAAATGAAATGCAAACATGCTTCCCAAAACAGTAAAAATCAGAAAAAGAAATGAAAAAATCTCAAATTCTTTTATTTCCAGAAAAATGACGTCTTCCGGTGGATGACAATATTCATGCCGGTGACTCAACACACCGAGACATACATCGCATTAAAGGAGCTTTACCTAGACGGAGATGTGCTCTGTGCAATTATTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGAATTTTATACCCTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATAGCGTTCAAAGTTGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GCGAATTTTATACCCTCAAAAGCGCTTTAGCTGCCAATCCAATGCTCTTTCAAAATTTCAGGATCCAAATTCGTATTAAAAAGTCATCCGGAAAATTTTTATTTATAGGTTTCGGGATATCAAAAAAATAAATATTCGAAATTTTGCCGAAAAAATCGCCTTGAGGCAATTGTCTCGCGGAAAAAAATCTAGAGGTCAGGCGTCACTACCGGCTGAACTACCGCATTTCCAACTTTGAACGCTAT</canonical_amplicon>
		<polymorphic_amplicon>GCGAATTTTATACCCTCAAAAGCGCTTTAGCTGCCAATCCAATGCTCTTTCAAAATTTCAGGATCCAAATTCGTATTAAAAAGTCATCCGGAAAATTTTTATTTWTAGGTTTCGGGATATCAAAAAAATAAATATTCGAAATTTTGCCGAAAAAATCGCCTTGAGGCAATTGTCTCGCGGAAAAAAATCTAGAGGTCAGGCGTCACTACCGGCTGAACTACCGCATTTCCAACTTTGAACGCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6718</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>161687</contig_pos>
        <strand>+</strand>
        <context>AATTTCAGGR[C/T]CCAAATTCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTCAAAAGCGCTTTAGCTGCCAATCCAATGCTCTTTCAAAATTTCAGGA</left_flank>
        <right_flank>CCAAATTCGTATTAAAAAGTCATCCGGAAAATTTTTATTTATAGGTTTCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCTTCTTTTTCTTTCGTCTTCTCCGATTCCCTTTCTCTGTTTTTCATCAATTTGAACTCTTGTTGACCATTGAAGTGTAAACCAATTTTAGTTCATGTGTTCTCGTTTTTTTTCGATTTTTGTTCAAAAATAGCCAAGCTAATTTTTTCAGAAGCATGGATTTTTGTGGTCGGCCAATTGAACCATCAACAAGTCGATCACCGACTCCAGATTACCGATTCAGAGTGTACCTACCGCCAGGAAAGTCTTACGATATGACTCTGTGGACCGTAAGTTTCTTTTTTACAAAAACGGGCTCAGTTTTTTTCTGATCGATTTGTTCTGTCAATTGATTTCCCTCGGGTTACCCATTCACACGGCACTCCTTCTGCCAGCTGTGGCCTGATTGAGGACCCATTGTCTACCCATCTTCGTGCAATACAGGGACTCTTTTCGCGAATTTTATACCCTCAAAAGCGCTTTAGCTGCCAATCCAATGCTCTTTCAAAATTTCAGGATCCAAATTCGTATTAAAAAGTCATCCGGAAAATTTTTATTTATAGGTTTCGGGATATCAAAAAAATAAATATTCGAAATTTTGCCGAAAAAATCGCCTTGAGGCAATTGTCTCGCGGAAAAAAATCTAGAGGTCAGGCGTCACTACCGGCTGAACTACCGCATTTCCAACTTTGAACGCTATGCACGAAACTTTGTATTGCCCTACATACCTTCAGAATTCTAACAAAAATTAAAGGGAGAAAATTCCTGTTCAATTCATATTAGATTGAGCTCAATACGTTGGCGTCCAGAGACTTGAATATTCACACAAAACATTTGGTTTCTGTGGGAATTTCAAGGAAAAAAAATGAAATGCAAACATGCTTCCCAAAACAGTAAAAATCAGAAAAAGAAATGAAAAAATCTCAAATTCTTTTATTTCCAGAAAAATGACGTCTTCCGGTGGATGACAATATTCATGCCGGTGACTCAACACACCGAGACATACATCGCATTAAAGG</canonical>
            <polymorphic>ACTCTTCTTTTTCTTTCGTCTTCTCCGATTCCCTTTCTCTGTTTTTCATCAATTTGAACTCTTGTTGACCATTGAAGTGTAAACCAATTTTAGTTCATGTGTTCTCGTTTTTTTTCGATTTTTGTTCAAAAATAGCCAAGCTAATTTTTTCAGAAGCATGGATTTTTGTGGTCGGCCAATTGAACCATCAACAAGTCGATCACCGACTCCAGATTACCGATTCAGAGTGTACCTACCGCCAGGAAAGTCTTACGATATGACTCTGTGGACCGTAAGTTTCTTTTTTACAAAAACGGGCTCAGTTTTTTTCTGATCGATTTGTTCTGTCAATTGATTTCCCTCGGGTTACCCATTCACACGGCACTCCTTCTGCCAGCTGTGGCCTGATTGAGGACCCATTGTCTACCCATCTTCGTGCAATACAGGGACTCTTTTCGCGAATTTTATACCCTCAAAAGCGCTTTAGCTGCCAATCCAATGCTCTTTCAAAATTTCAGGAYCCAAATTCGTATTAAAAAGTCATCCGGAAAATTTTTATTTATAGGTTTCGGGATATCAAAAAAATAAATATTCGAAATTTTGCCGAAAAAATCGCCTTGAGGCAATTGTCTCGCGGAAAAAAATCTAGAGGTCAGGCGTCACTACCGGCTGAACTACCGCATTTCCAACTTTGAACGCTATGCACGAAACTTTGTATTGCCCTACATACCTTCAGAATTCTAACAAAAATTAAAGGGAGAAAATTCCTGTTCAATTCATATTAGATTGAGCTCAATACGTTGGCGTCCAGAGACTTGAATATTCACACAAAACATTTGGTTTCTGTGGGAATTTCAAGGAAAAAAAATGAAATGCAAACATGCTTCCCAAAACAGTAAAAATCAGAAAAAGAAATGAAAAAATCTCAAATTCTTTTATTTCCAGAAAAATGACGTCTTCCGGTGGATGACAATATTCATGCCGGTGACTCAACACACCGAGACATACATCGCATTAAAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGATCC</site>
                <isoschizomers>
                    <enzyme>BamHI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>503 197 186 114</canonical_bands>
                <polymorphic_bands>689 197 114</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTGTTCTGTCAATTGATTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGATATCCCGAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GATTTGTTCTGTCAATTGATTTCCCTCGGGTTACCCATTCACACGGCACTCCTTCTGCCAGCTGTGGCCTGATTGAGGACCCATTGTCTACCCATCTTCGTGCAATACAGGGACTCTTTTCGCGAATTTTATACCCTCAAAAGCGCTTTAGCTGCCAATCCAATGCTCTTTCAAAATTTCAGGATCCAAATTCGTATTAAAAAGTCATCCGGAAAATTTTTATTTATAGGTTTCGGGATATCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTGTTCTGTCAATTGATTTCCCTCGGGTTACCCATTCACACGGCACTCCTTCTGCCAGCTGTGGCCTGATTGAGGACCCATTGTCTACCCATCTTCGTGCAATACAGGGACTCTTTTCGCGAATTTTATACCCTCAAAAGCGCTTTAGCTGCCAATCCAATGCTCTTTCAAAATTTCAGGAYCCAAATTCGTATTAAAAAGTCATCCGGAAAATTTTTATTTATAGGTTTCGGGATATCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6719</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>161686</contig_pos>
        <strand>+</strand>
        <context>AAATTTCAGG[A/G]YCCAAATTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCTCAAAAGCGCTTTAGCTGCCAATCCAATGCTCTTTCAAAATTTCAGG</left_flank>
        <right_flank>TCCAAATTCGTATTAAAAAGTCATCCGGAAAATTTTTATTTATAGGTTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACTCTTCTTTTTCTTTCGTCTTCTCCGATTCCCTTTCTCTGTTTTTCATCAATTTGAACTCTTGTTGACCATTGAAGTGTAAACCAATTTTAGTTCATGTGTTCTCGTTTTTTTTCGATTTTTGTTCAAAAATAGCCAAGCTAATTTTTTCAGAAGCATGGATTTTTGTGGTCGGCCAATTGAACCATCAACAAGTCGATCACCGACTCCAGATTACCGATTCAGAGTGTACCTACCGCCAGGAAAGTCTTACGATATGACTCTGTGGACCGTAAGTTTCTTTTTTACAAAAACGGGCTCAGTTTTTTTCTGATCGATTTGTTCTGTCAATTGATTTCCCTCGGGTTACCCATTCACACGGCACTCCTTCTGCCAGCTGTGGCCTGATTGAGGACCCATTGTCTACCCATCTTCGTGCAATACAGGGACTCTTTTCGCGAATTTTATACCCTCAAAAGCGCTTTAGCTGCCAATCCAATGCTCTTTCAAAATTTCAGGATCCAAATTCGTATTAAAAAGTCATCCGGAAAATTTTTATTTATAGGTTTCGGGATATCAAAAAAATAAATATTCGAAATTTTGCCGAAAAAATCGCCTTGAGGCAATTGTCTCGCGGAAAAAAATCTAGAGGTCAGGCGTCACTACCGGCTGAACTACCGCATTTCCAACTTTGAACGCTATGCACGAAACTTTGTATTGCCCTACATACCTTCAGAATTCTAACAAAAATTAAAGGGAGAAAATTCCTGTTCAATTCATATTAGATTGAGCTCAATACGTTGGCGTCCAGAGACTTGAATATTCACACAAAACATTTGGTTTCTGTGGGAATTTCAAGGAAAAAAAATGAAATGCAAACATGCTTCCCAAAACAGTAAAAATCAGAAAAAGAAATGAAAAAATCTCAAATTCTTTTATTTCCAGAAAAATGACGTCTTCCGGTGGATGACAATATTCATGCCGGTGACTCAACACACCGAGACATACATCGCATTAAAG</canonical>
            <polymorphic>GACTCTTCTTTTTCTTTCGTCTTCTCCGATTCCCTTTCTCTGTTTTTCATCAATTTGAACTCTTGTTGACCATTGAAGTGTAAACCAATTTTAGTTCATGTGTTCTCGTTTTTTTTCGATTTTTGTTCAAAAATAGCCAAGCTAATTTTTTCAGAAGCATGGATTTTTGTGGTCGGCCAATTGAACCATCAACAAGTCGATCACCGACTCCAGATTACCGATTCAGAGTGTACCTACCGCCAGGAAAGTCTTACGATATGACTCTGTGGACCGTAAGTTTCTTTTTTACAAAAACGGGCTCAGTTTTTTTCTGATCGATTTGTTCTGTCAATTGATTTCCCTCGGGTTACCCATTCACACGGCACTCCTTCTGCCAGCTGTGGCCTGATTGAGGACCCATTGTCTACCCATCTTCGTGCAATACAGGGACTCTTTTCGCGAATTTTATACCCTCAAAAGCGCTTTAGCTGCCAATCCAATGCTCTTTCAAAATTTCAGGRTCCAAATTCGTATTAAAAAGTCATCCGGAAAATTTTTATTTATAGGTTTCGGGATATCAAAAAAATAAATATTCGAAATTTTGCCGAAAAAATCGCCTTGAGGCAATTGTCTCGCGGAAAAAAATCTAGAGGTCAGGCGTCACTACCGGCTGAACTACCGCATTTCCAACTTTGAACGCTATGCACGAAACTTTGTATTGCCCTACATACCTTCAGAATTCTAACAAAAATTAAAGGGAGAAAATTCCTGTTCAATTCATATTAGATTGAGCTCAATACGTTGGCGTCCAGAGACTTGAATATTCACACAAAACATTTGGTTTCTGTGGGAATTTCAAGGAAAAAAAATGAAATGCAAACATGCTTCCCAAAACAGTAAAAATCAGAAAAAGAAATGAAAAAATCTCAAATTCTTTTATTTCCAGAAAAATGACGTCTTCCGGTGGATGACAATATTCATGCCGGTGACTCAACACACCGAGACATACATCGCATTAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGATCC</site>
                <isoschizomers>
                    <enzyme>BamHI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>502 198 186 114</canonical_bands>
                <polymorphic_bands>688 198 114</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>227 210 162 134 78 76 59 29 25</canonical_bands>
                <polymorphic_bands>227 210 162 134 88 78 76 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTGTTCTGTCAATTGATTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGATATCCCGAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GATTTGTTCTGTCAATTGATTTCCCTCGGGTTACCCATTCACACGGCACTCCTTCTGCCAGCTGTGGCCTGATTGAGGACCCATTGTCTACCCATCTTCGTGCAATACAGGGACTCTTTTCGCGAATTTTATACCCTCAAAAGCGCTTTAGCTGCCAATCCAATGCTCTTTCAAAATTTCAGGATCCAAATTCGTATTAAAAAGTCATCCGGAAAATTTTTATTTATAGGTTTCGGGATATCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTGTTCTGTCAATTGATTTCCCTCGGGTTACCCATTCACACGGCACTCCTTCTGCCAGCTGTGGCCTGATTGAGGACCCATTGTCTACCCATCTTCGTGCAATACAGGGACTCTTTTCGCGAATTTTATACCCTCAAAAGCGCTTTAGCTGCCAATCCAATGCTCTTTCAAAATTTCAGGRTCCAAATTCGTATTAAAAAGTCATCCGGAAAATTTTTATTTATAGGTTTCGGGATATCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6720</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>161671</contig_pos>
        <strand>+</strand>
        <context>TCCAATGCTC[A/T]TTCAAAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCGCGAATTTTATACCCTCAAAAGCGCTTTAGCTGCCAATCCAATGCTC</left_flank>
        <right_flank>TTCAAAATTTCAGGATCCAAATTCGTATTAAAAAGTCATCCGGAAAATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCTCTTTAGCTGACTCTTCTTTTTCTTTCGTCTTCTCCGATTCCCTTTCTCTGTTTTTCATCAATTTGAACTCTTGTTGACCATTGAAGTGTAAACCAATTTTAGTTCATGTGTTCTCGTTTTTTTTCGATTTTTGTTCAAAAATAGCCAAGCTAATTTTTTCAGAAGCATGGATTTTTGTGGTCGGCCAATTGAACCATCAACAAGTCGATCACCGACTCCAGATTACCGATTCAGAGTGTACCTACCGCCAGGAAAGTCTTACGATATGACTCTGTGGACCGTAAGTTTCTTTTTTACAAAAACGGGCTCAGTTTTTTTCTGATCGATTTGTTCTGTCAATTGATTTCCCTCGGGTTACCCATTCACACGGCACTCCTTCTGCCAGCTGTGGCCTGATTGAGGACCCATTGTCTACCCATCTTCGTGCAATACAGGGACTCTTTTCGCGAATTTTATACCCTCAAAAGCGCTTTAGCTGCCAATCCAATGCTCTTTCAAAATTTCAGGATCCAAATTCGTATTAAAAAGTCATCCGGAAAATTTTTATTTATAGGTTTCGGGATATCAAAAAAATAAATATTCGAAATTTTGCCGAAAAAATCGCCTTGAGGCAATTGTCTCGCGGAAAAAAATCTAGAGGTCAGGCGTCACTACCGGCTGAACTACCGCATTTCCAACTTTGAACGCTATGCACGAAACTTTGTATTGCCCTACATACCTTCAGAATTCTAACAAAAATTAAAGGGAGAAAATTCCTGTTCAATTCATATTAGATTGAGCTCAATACGTTGGCGTCCAGAGACTTGAATATTCACACAAAACATTTGGTTTCTGTGGGAATTTCAAGGAAAAAAAATGAAATGCAAACATGCTTCCCAAAACAGTAAAAATCAGAAAAAGAAATGAAAAAATCTCAAATTCTTTTATTTCCAGAAAAATGACGTCTTCCGGTGGATGACAATATTCATGCCGGTGACTCAACACACCGAGACA</canonical>
            <polymorphic>TTTTTCTCTTTAGCTGACTCTTCTTTTTCTTTCGTCTTCTCCGATTCCCTTTCTCTGTTTTTCATCAATTTGAACTCTTGTTGACCATTGAAGTGTAAACCAATTTTAGTTCATGTGTTCTCGTTTTTTTTCGATTTTTGTTCAAAAATAGCCAAGCTAATTTTTTCAGAAGCATGGATTTTTGTGGTCGGCCAATTGAACCATCAACAAGTCGATCACCGACTCCAGATTACCGATTCAGAGTGTACCTACCGCCAGGAAAGTCTTACGATATGACTCTGTGGACCGTAAGTTTCTTTTTTACAAAAACGGGCTCAGTTTTTTTCTGATCGATTTGTTCTGTCAATTGATTTCCCTCGGGTTACCCATTCACACGGCACTCCTTCTGCCAGCTGTGGCCTGATTGAGGACCCATTGTCTACCCATCTTCGTGCAATACAGGGACTCTTTTCGCGAATTTTATACCCTCAAAAGCGCTTTAGCTGCCAATCCAATGCTCWTTCAAAATTTCAGGATCCAAATTCGTATTAAAAAGTCATCCGGAAAATTTTTATTTATAGGTTTCGGGATATCAAAAAAATAAATATTCGAAATTTTGCCGAAAAAATCGCCTTGAGGCAATTGTCTCGCGGAAAAAAATCTAGAGGTCAGGCGTCACTACCGGCTGAACTACCGCATTTCCAACTTTGAACGCTATGCACGAAACTTTGTATTGCCCTACATACCTTCAGAATTCTAACAAAAATTAAAGGGAGAAAATTCCTGTTCAATTCATATTAGATTGAGCTCAATACGTTGGCGTCCAGAGACTTGAATATTCACACAAAACATTTGGTTTCTGTGGGAATTTCAAGGAAAAAAAATGAAATGCAAACATGCTTCCCAAAACAGTAAAAATCAGAAAAAGAAATGAAAAAATCTCAAATTCTTTTATTTCCAGAAAAATGACGTCTTCCGGTGGATGACAATATTCATGCCGGTGACTCAACACACCGAGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTGTTCTGTCAATTGATTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGATATCCCGAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GATTTGTTCTGTCAATTGATTTCCCTCGGGTTACCCATTCACACGGCACTCCTTCTGCCAGCTGTGGCCTGATTGAGGACCCATTGTCTACCCATCTTCGTGCAATACAGGGACTCTTTTCGCGAATTTTATACCCTCAAAAGCGCTTTAGCTGCCAATCCAATGCTCTTTCAAAATTTCAGGATCCAAATTCGTATTAAAAAGTCATCCGGAAAATTTTTATTTATAGGTTTCGGGATATCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTGTTCTGTCAATTGATTTCCCTCGGGTTACCCATTCACACGGCACTCCTTCTGCCAGCTGTGGCCTGATTGAGGACCCATTGTCTACCCATCTTCGTGCAATACAGGGACTCTTTTCGCGAATTTTATACCCTCAAAAGCGCTTTAGCTGCCAATCCAATGCTCWTTCAAAATTTCAGGATCCAAATTCGTATTAAAAAGTCATCCGGAAAATTTTTATTTATAGGTTTCGGGATATCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6722</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>251418</contig_pos>
        <strand>+</strand>
        <context>ATTTGAAAGA[C/T]ATAGTAGGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAATTTTGATTAAGTTCCAGTACCGGCCAATTTTCCATATTTGAAAGA</left_flank>
        <right_flank>ATAGTAGGTTTTGGATGGATGAGACTGATCAATTCCAGTTCTCCTACGCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTTCACCTTGCTCCTTCTCATGGTGTGATAAAGTTCCTTGAGGTCCTTACAGTAAACACGGAAAAAAGTATTCTCCACAATTGACCTCATCTAATCAGGCAGAAAAATAATTAGGTAATTTGTCGGGAAAGTTTTAGAGGTTGACTGATGAAGGTGTCTTAATTGTGAAGAGCAGACGGAAAACGCTTCCGGGAAAAAAAATTAACCGGAAGGGATTAAGGGAAAAGGGAACATGGTGTGGTGTACTGTAGAAACGATCGATTGGGAAAATGTGCCATTCGTAAAAAAAGGCTTGCCGATTCTGCGAGAATAATCTTCAAAATGAATTCAGAATGTTTACTTGTATTTTGAAACATGTATTTTTTTTCTTGAAATGATTTGTTTGAAATAACTTTTTTTTTGCTATTTTATCTTTTTTCAAAAAATTTAAGCTGCCTTTAACAAGCTTAAAATTTTGATTAAGTTCCAGTACCGGCCAATTTTCCATATTTGAAAGATATAGTAGGTTTTGGATGGATGAGACTGATCAATTCCAGTTCTCCTACGCAAAATTCTTCATTTGGTGTTTTGGGTTTTTCTACAATTTGAAAAAAAATTCCGCCTGTTTCAGAAATGTCAAAAATAACAAGAAGCTTGTGATTTTAATGATGTGTGGCTGTTTAGCTTTCAAAATAGGTGAAAGTTCAAAAAACTTGGGTGGTACTGTAGCTTCAAATATTCAATGAACCCTCTTCTTTTCCTTTTGGCACTCTCTCGAGACCACCCGGAAAACAGTGTCTATCAATCACCCCTTACTTATTCTGTTTTGCCGTTCCTCTTCCGTTTTGTTTCCAAGAGTGACAGCCGCTTTGAGATGTGACATCGGCGCGCGAATGTCACCTTTTGTGATACAATCTGTTCCCGAGTGAAAGACGAAAAATTAGAGAGCAGAAGACGGCAGAGAAACAAACAGAACTTGACACAAAATTGGATAAACAAAAGAGAAGACTTCTATGCTT</canonical>
            <polymorphic>AACTTCACCTTGCTCCTTCTCATGGTGTGATAAAGTTCCTTGAGGTCCTTACAGTAAACACGGAAAAAAGTATTCTCCACAATTGACCTCATCTAATCAGGCAGAAAAATAATTAGGTAATTTGTCGGGAAAGTTTTAGAGGTTGACTGATGAAGGTGTCTTAATTGTGAAGAGCAGACGGAAAACGCTTCCGGGAAAAAAAATTAACCGGAAGGGATTAAGGGAAAAGGGAACATGGTGTGGTGTACTGTAGAAACGATCGATTGGGAAAATGTGCCATTCGTAAAAAAAGGCTTGCCGATTCTGCGAGAATAATCTTCAAAATGAATTCAGAATGTTTACTTGTATTTTGAAACATGTATTTTTTTTCTTGAAATGATTTGTTTGAAATAACTTTTTTTTTGCTATTTTATCTTTTTTCAAAAAATTTAAGCTGCCTTTAACAAGCTTAAAATTTTGATTAAGTTCCAGTACCGGCCAATTTTCCATATTTGAAAGAYATAGTAGGTTTTGGATGGATGAGACTGATCAATTCCAGTTCTCCTACGCAAAATTCTTCATTTGGTGTTTTGGGTTTTTCTACAATTTGAAAAAAAATTCCGCCTGTTTCAGAAATGTCAAAAATAACAAGAAGCTTGTGATTTTAATGATGTGTGGCTGTTTAGCTTTCAAAATAGGTGAAAGTTCAAAAAACTTGGGTGGTACTGTAGCTTCAAATATTCAATGAACCCTCTTCTTTTCCTTTTGGCACTCTCTCGAGACCACCCGGAAAACAGTGTCTATCAATCACCCCTTACTTATTCTGTTTTGCCGTTCCTCTTCCGTTTTGTTTCCAAGAGTGACAGCCGCTTTGAGATGTGACATCGGCGCGCGAATGTCACCTTTTGTGATACAATCTGTTCCCGAGTGAAAGACGAAAAATTAGAGAGCAGAAGACGGCAGAGAAACAAACAGAACTTGACACAAAATTGGATAAACAAAAGAGAAGACTTCTATGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCAAAATGAATTCAGAATGTT</pcr_primer_p1>
		<pcr_primer_p2>CAAATGAAGAATTTTGCGTAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTTCAAAATGAATTCAGAATGTTTACTTGTATTTTGAAACATGTATTTTTTTTCTTGAAATGATTTGTTTGAAATAACTTTTTTTTTGCTATTTTATCTTTTTTCAAAAAATTTAAGCTGCCTTTAACAAGCTTAAAATTTTGATTAAGTTCCAGTACCGGCCAATTTTCCATATTTGAAAGATATAGTAGGTTTTGGATGGATGAGACTGATCAATTCCAGTTCTCCTACGCAAAATTCTTCATTTG</canonical_amplicon>
		<polymorphic_amplicon>CTTCAAAATGAATTCAGAATGTTTACTTGTATTTTGAAACATGTATTTTTTTTCTTGAAATGATTTGTTTGAAATAACTTTTTTTTTGCTATTTTATCTTTTTTCAAAAAATTTAAGCTGCCTTTAACAAGCTTAAAATTTTGATTAAGTTCCAGTACCGGCCAATTTTCCATATTTGAAAGAYATAGTAGGTTTTGGATGGATGAGACTGATCAATTCCAGTTCTCCTACGCAAAATTCTTCATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6723</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>251820</contig_pos>
        <strand>+</strand>
        <context>ACAATCTGTT[C/G]CCGAGTRAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGAGATGTGACATCGGCGCGCGAATGTCACCTTTTGTGATACAATCTGTT</left_flank>
        <right_flank>CCGAGTGAAAGACGAAAAATTAGAGAGCAGAAGACGGCAGAGAAACAAAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCTATTTTATCTTTTTTCAAAAAATTTAAGCTGCCTTTAACAAGCTTAAAATTTTGATTAAGTTCCAGTACCGGCCAATTTTCCATATTTGAAAGATATAGTAGGTTTTGGATGGATGAGACTGATCAATTCCAGTTCTCCTACGCAAAATTCTTCATTTGGTGTTTTGGGTTTTTCTACAATTTGAAAAAAAATTCCGCCTGTTTCAGAAATGTCAAAAATAACAAGAAGCTTGTGATTTTAATGATGTGTGGCTGTTTAGCTTTCAAAATAGGTGAAAGTTCAAAAAACTTGGGTGGTACTGTAGCTTCAAATATTCAATGAACCCTCTTCTTTTCCTTTTGGCACTCTCTCGAGACCACCCGGAAAACAGTGTCTATCAATCACCCCTTACTTATTCTGTTTTGCCGTTCCTCTTCCGTTTTGTTTCCAAGAGTGACAGCCGCTTTGAGATGTGACATCGGCGCGCGAATGTCACCTTTTGTGATACAATCTGTTCCCGAGTGAAAGACGAAAAATTAGAGAGCAGAAGACGGCAGAGAAACAAACAGAACTTGACACAAAATTGGATAAACAAAAGAGAAGACTTCTATGCTTCTTCTACTGCTACCGTACGGTATCTATTGGTAATGGCTGTGTAGGGACTGTTCAAATATTGACACCTGTGTGGTTGGGTTCTAAAGAGTCCTTTATGCAGTAGCCGTTAGGGAGGACAACGCAGCTTAACCTGTTATGCTCTGTTTCGAATGGTTTCCCCCCTCTCGGACTACTTGTTGCTTGCTCAGCTTTTTGTTTGATGGGGTGAGCATTAACGTATTTAGTGTTTTGGGGTTTTTTTATACGATTTGATTTTTTTTCGGTTTCTGAAATGTTTTAAATAATTTGGAATTGTTTAGATTATCGTTTAGCGTACAATACACTGGGAATTACAAATATTGAATATATTGGAAAATTTTGAAAATAGCGAATAATTTCTGATATGAGAACATGCAAAGTTTC</canonical>
            <polymorphic>TGCTATTTTATCTTTTTTCAAAAAATTTAAGCTGCCTTTAACAAGCTTAAAATTTTGATTAAGTTCCAGTACCGGCCAATTTTCCATATTTGAAAGATATAGTAGGTTTTGGATGGATGAGACTGATCAATTCCAGTTCTCCTACGCAAAATTCTTCATTTGGTGTTTTGGGTTTTTCTACAATTTGAAAAAAAATTCCGCCTGTTTCAGAAATGTCAAAAATAACAAGAAGCTTGTGATTTTAATGATGTGTGGCTGTTTAGCTTTCAAAATAGGTGAAAGTTCAAAAAACTTGGGTGGTACTGTAGCTTCAAATATTCAATGAACCCTCTTCTTTTCCTTTTGGCACTCTCTCGAGACCACCCGGAAAACAGTGTCTATCAATCACCCCTTACTTATTCTGTTTTGCCGTTCCTCTTCCGTTTTGTTTCCAAGAGTGACAGCCGCTTTGAGATGTGACATCGGCGCGCGAATGTCACCTTTTGTGATACAATCTGTTSCCGAGTGAAAGACGAAAAATTAGAGAGCAGAAGACGGCAGAGAAACAAACAGAACTTGACACAAAATTGGATAAACAAAAGAGAAGACTTCTATGCTTCTTCTACTGCTACCGTACGGTATCTATTGGTAATGGCTGTGTAGGGACTGTTCAAATATTGACACCTGTGTGGTTGGGTTCTAAAGAGTCCTTTATGCAGTAGCCGTTAGGGAGGACAACGCAGCTTAACCTGTTATGCTCTGTTTCGAATGGTTTCCCCCCTCTCGGACTACTTGTTGCTTGCTCAGCTTTTTGTTTGATGGGGTGAGCATTAACGTATTTAGTGTTTTGGGGTTTTTTTATACGATTTGATTTTTTTTCGGTTTCTGAAATGTTTTAAATAATTTGGAATTGTTTAGATTATCGTTTAGCGTACAATACACTGGGAATTACAAATATTGAATATATTGGAAAATTTTGAAAATAGCGAATAATTTCTGATATGAGAACATGCAAAGTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 353 147</canonical_bands>
                <polymorphic_bands>647 353</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>500 353 145 2</canonical_bands>
                <polymorphic_bands>647 353</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATATTCAATGAACCCTCTTCT</pcr_primer_p1>
		<pcr_primer_p2>GTGTCAAGTTCTGTTTGTTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATATTCAATGAACCCTCTTCTTTTCCTTTTGGCACTCTCTCGAGACCACCCGGAAAACAGTGTCTATCAATCACCCCTTACTTATTCTGTTTTGCCGTTCCTCTTCCGTTTTGTTTCCAAGAGTGACAGCCGCTTTGAGATGTGACATCGGCGCGCGAATGTCACCTTTTGTGATACAATCTGTTCCCGAGTGAAAGACGAAAAATTAGAGAGCAGAAGACGGCAGAGAAACAAACAGAACTTGACAC</canonical_amplicon>
		<polymorphic_amplicon>AAATATTCAATGAACCCTCTTCTTTTCCTTTTGGCACTCTCTCGAGACCACCCGGAAAACAGTGTCTATCAATCACCCCTTACTTATTCTGTTTTGCCGTTCCTCTTCCGTTTTGTTTCCAAGAGTGACAGCCGCTTTGAGATGTGACATCGGCGCGCGAATGTCACCTTTTGTGATACAATCTGTTSCCGAGTGAAAGACGAAAAATTAGAGAGCAGAAGACGGCAGAGAAACAAACAGAACTTGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6724</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>251827</contig_pos>
        <strand>+</strand>
        <context>GTTSCCGAGT[A/G]AAAGACGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGACATCGGCGCGCGAATGTCACCTTTTGTGATACAATCTGTTCCCGAGT</left_flank>
        <right_flank>AAAGACGAAAAATTAGAGAGCAGAAGACGGCAGAGAAACAAACAGAACTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATCTTTTTTCAAAAAATTTAAGCTGCCTTTAACAAGCTTAAAATTTTGATTAAGTTCCAGTACCGGCCAATTTTCCATATTTGAAAGATATAGTAGGTTTTGGATGGATGAGACTGATCAATTCCAGTTCTCCTACGCAAAATTCTTCATTTGGTGTTTTGGGTTTTTCTACAATTTGAAAAAAAATTCCGCCTGTTTCAGAAATGTCAAAAATAACAAGAAGCTTGTGATTTTAATGATGTGTGGCTGTTTAGCTTTCAAAATAGGTGAAAGTTCAAAAAACTTGGGTGGTACTGTAGCTTCAAATATTCAATGAACCCTCTTCTTTTCCTTTTGGCACTCTCTCGAGACCACCCGGAAAACAGTGTCTATCAATCACCCCTTACTTATTCTGTTTTGCCGTTCCTCTTCCGTTTTGTTTCCAAGAGTGACAGCCGCTTTGAGATGTGACATCGGCGCGCGAATGTCACCTTTTGTGATACAATCTGTTCCCGAGTGAAAGACGAAAAATTAGAGAGCAGAAGACGGCAGAGAAACAAACAGAACTTGACACAAAATTGGATAAACAAAAGAGAAGACTTCTATGCTTCTTCTACTGCTACCGTACGGTATCTATTGGTAATGGCTGTGTAGGGACTGTTCAAATATTGACACCTGTGTGGTTGGGTTCTAAAGAGTCCTTTATGCAGTAGCCGTTAGGGAGGACAACGCAGCTTAACCTGTTATGCTCTGTTTCGAATGGTTTCCCCCCTCTCGGACTACTTGTTGCTTGCTCAGCTTTTTGTTTGATGGGGTGAGCATTAACGTATTTAGTGTTTTGGGGTTTTTTTATACGATTTGATTTTTTTTCGGTTTCTGAAATGTTTTAAATAATTTGGAATTGTTTAGATTATCGTTTAGCGTACAATACACTGGGAATTACAAATATTGAATATATTGGAAAATTTTGAAAATAGCGAATAATTTCTGATATGAGAACATGCAAAGTTTCTAAAAAT</canonical>
            <polymorphic>TTATCTTTTTTCAAAAAATTTAAGCTGCCTTTAACAAGCTTAAAATTTTGATTAAGTTCCAGTACCGGCCAATTTTCCATATTTGAAAGATATAGTAGGTTTTGGATGGATGAGACTGATCAATTCCAGTTCTCCTACGCAAAATTCTTCATTTGGTGTTTTGGGTTTTTCTACAATTTGAAAAAAAATTCCGCCTGTTTCAGAAATGTCAAAAATAACAAGAAGCTTGTGATTTTAATGATGTGTGGCTGTTTAGCTTTCAAAATAGGTGAAAGTTCAAAAAACTTGGGTGGTACTGTAGCTTCAAATATTCAATGAACCCTCTTCTTTTCCTTTTGGCACTCTCTCGAGACCACCCGGAAAACAGTGTCTATCAATCACCCCTTACTTATTCTGTTTTGCCGTTCCTCTTCCGTTTTGTTTCCAAGAGTGACAGCCGCTTTGAGATGTGACATCGGCGCGCGAATGTCACCTTTTGTGATACAATCTGTTCCCGAGTRAAAGACGAAAAATTAGAGAGCAGAAGACGGCAGAGAAACAAACAGAACTTGACACAAAATTGGATAAACAAAAGAGAAGACTTCTATGCTTCTTCTACTGCTACCGTACGGTATCTATTGGTAATGGCTGTGTAGGGACTGTTCAAATATTGACACCTGTGTGGTTGGGTTCTAAAGAGTCCTTTATGCAGTAGCCGTTAGGGAGGACAACGCAGCTTAACCTGTTATGCTCTGTTTCGAATGGTTTCCCCCCTCTCGGACTACTTGTTGCTTGCTCAGCTTTTTGTTTGATGGGGTGAGCATTAACGTATTTAGTGTTTTGGGGTTTTTTTATACGATTTGATTTTTTTTCGGTTTCTGAAATGTTTTAAATAATTTGGAATTGTTTAGATTATCGTTTAGCGTACAATACACTGGGAATTACAAATATTGAATATATTGGAAAATTTTGAAAATAGCGAATAATTTCTGATATGAGAACATGCAAAGTTTCTAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>158 135 96 87 78 73 54 52 49 24 23 21 20 20 19 19 14 14 14 11 9 6 2 2</canonical_bands>
                <polymorphic_bands>158 135 96 87 78 74 73 52 49 24 23 21 20 19 19 14 14 14 11 9 6 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATATTCAATGAACCCTCTTCT</pcr_primer_p1>
		<pcr_primer_p2>GTGTCAAGTTCTGTTTGTTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATATTCAATGAACCCTCTTCTTTTCCTTTTGGCACTCTCTCGAGACCACCCGGAAAACAGTGTCTATCAATCACCCCTTACTTATTCTGTTTTGCCGTTCCTCTTCCGTTTTGTTTCCAAGAGTGACAGCCGCTTTGAGATGTGACATCGGCGCGCGAATGTCACCTTTTGTGATACAATCTGTTCCCGAGTGAAAGACGAAAAATTAGAGAGCAGAAGACGGCAGAGAAACAAACAGAACTTGACAC</canonical_amplicon>
		<polymorphic_amplicon>AAATATTCAATGAACCCTCTTCTTTTCCTTTTGGCACTCTCTCGAGACCACCCGGAAAACAGTGTCTATCAATCACCCCTTACTTATTCTGTTTTGCCGTTCCTCTTCCGTTTTGTTTCCAAGAGTGACAGCCGCTTTGAGATGTGACATCGGCGCGCGAATGTCACCTTTTGTGATACAATCTGTTCCCGAGTRAAAGACGAAAAATTAGAGAGCAGAAGACGGCAGAGAAACAAACAGAACTTGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6725</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>253280</contig_pos>
        <strand></strand>
        <context>ATTTTAAAAG[G/A]AAAAATGTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAGTATTTTTTTTGGAAAAGAAAACGGGATGATGGTGAACATTTTAAAAG</left_flank>
        <right_flank>AAAAATGTGAAATTTAGATCTTGAAGATGAATGAAGTTTGATCGTTACCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAGGCGATGTAAATGCGCTCGGAGACATAATTTGTATACCGTATCACGTTCTTCTAAACGAGAATACCGAACTGCAAGAGCAACTCTAATGATAACAGTATCCAAAATACATAAATTCCTGGCACTATATCGTTGAAACCGTTAATTTCTCGCTTCACAATTTCCAACATTCACGTGAAACAGCTGCACGACGAGTACGATTGTACGAATTGAAAATTTATTCAGCTGATAAGAGAGCCAACTGACCAAATTACAGTTTCAGCTTCCTTGTACGTGCAAAGAGAGTTTCATTTTCTTTGTTTTCTGAATGTTCTTTGATATAAATAAATTTATAGCAAGAAAAACATAAGCCTAGGAGTTCTTGGTTTGAGATTTTTGTGATGCACTGACATAAGCGGAAGAAGATTAGCAGTTCGAACATTAACAAAATATCTAGAACTGCTGGAACAGTATTTTTTTTGGAAAAGAAAACGGGATGATGGTGAACATTTTAAAAGGAAAAATGTGAAATTTAGATCTTGAAGATGAATGAAGTTTGATCGTTACCACTATCCTATTGCTTTTCCTAAATCTCCCTTATTTTTTTGACAGCTTTCCGAAACAGCAACTTTTTTCCGAAAAAAAAAATCTAAAAATCACCCTTTTCAATCTGATAACCCCTAACACTGTCTTCTCAATCTATCTCTTCAAATCCATTATCAAACACCCACGTAATTGTTGCATTCTTTCTTCGGAACACGAATGATTGTATCAATTCGTCTTTTCCTGCCTCTTCCGCTGCCTCAAATGACCCCACCTTCACTTCTTCTAATTTATCGCTTTTCTGTGTTGTTGTTCTTGTTACTATTCAAAAGTTGTTGTATTTCAGGAAAAAGAGAGAAGAGAAGGTAGTGCGGGTTTTGTTTATTTATGTTCATTTTATTTCCATCCCCCGTTTCTTCTTTTTCTTCTTCTTTTTGCACTGCTTTCCTACACGGTTGAATTTTTCTTTTAGTTTT</canonical>
            <polymorphic>GGAAGGCGATGTAAATGCGCTCGGAGACATAATTTGTATACCGTATCACGTTCTTCTAAACGAGAATACCGAACTGCAAGAGCAACTCTAATGATAACAGTATCCAAAATACATAAATTCCTGGCACTATATCGTTGAAACCGTTAATTTCTCGCTTCACAATTTCCAACATTCACGTGAAACAGCTGCACGACGAGTACGATTGTACGAATTGAAAATTTATTCAGCTGATAAGAGAGCCAACTGACCAAATTACAGTTTCAGCTTCCTTGTACGTGCAAAGAGAGTTTCATTTTCTTTGTTTTCTGAATGTTCTTTGATATAAATAAATTTATAGCAAGAAAAACATAAGCCTAGGAGTTCTTGGTTTGAGATTTTTGTGATGCACTGACATAAGCGGAAGAAGATTAGCAGTTCGAACATTAACAAAATATCTAGAACTGCTGGAACAGTATTTTTTTTGGAAAAGAAAACGGGATGATGGTGAACATTTTAAAAGRAAAAATGTGAAATTTAGATCTTGAAGATGAATGAAGTTTGATCGTTACCACTATCCTATTGCTTTTCCTAAATCTCCCTTATTTTTTTGACAGCTTTCCGAAACAGCAACTTTTTTCCGAAAAAAAAAATCTAAAAATCACCCTTTTCAATCTGATAACCCCTAACACTGTCTTCTCAATCTATCTCTTCAAATCCATTATCAAACACCCACGTAATTGTTGCATTCTTTCTTCGGAACACGAATGATTGTATCAATTCGTCTTTTCCTGCCTCTTCCGCTGCCTCAAATGACCCCACCTTCACTTCTTCTAATTTATCGCTTTTCTGTGTTGTTGTTCTTGTTACTATTCAAAAGTTGTTGTATTTCAGGAAAAAGAGAGAAGAGAAGGTAGTGCGGGTTTTGTTTATTTATGTTCATTTTATTTCCATCCCCCGTTTCTTCTTTTTCTTCTTCTTTTTGCACTGCTTTCCTACACGGTTGAATTTTTCTTTTAGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATATCTAGAACTGCTGGAACA</pcr_primer_p1>
		<pcr_primer_p2>GAGAAGACAGTGTTAGGGGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATATCTAGAACTGCTGGAACAGTATTTTTTTTGGAAAAGAAAACGGGATGATGGTGAACATTTTAAAAGGAAAAATGTGAAATTTAGATCTTGAAGATGAATGAAGTTTGATCGTTACCACTATCCTATTGCTTTTCCTAAATCTCCCTTATTTTTTTGACAGCTTTCCGAAACAGCAACTTTTTTCCGAAAAAAAAAATCTAAAAATCACCCTTTTCAATCTGATAACCCCTAACACTGTCTTCTC</canonical_amplicon>
		<polymorphic_amplicon>AAATATCTAGAACTGCTGGAACAGTATTTTTTTTGGAAAAGAAAACGGGATGATGGTGAACATTTTAAAAGRAAAAATGTGAAATTTAGATCTTGAAGATGAATGAAGTTTGATCGTTACCACTATCCTATTGCTTTTCCTAAATCTCCCTTATTTTTTTGACAGCTTTCCGAAACAGCAACTTTTTTCCGAAAAAAAAAATCTAAAAATCACCCTTTTCAATCTGATAACCCCTAACACTGTCTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6726</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>253180</contig_pos>
        <strand>+</strand>
        <context>GACATAAGCG[A/G]AAGAAGATTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGCCTAGGAGTTCTTGGTTTGAGATTTTTGTGATGCACTGACATAAGCG</left_flank>
        <right_flank>AAGAAGATTAGCAGTTCGAACATTAACAAAATATCTAGAACTGCTGGAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGGTTTCAGTTACTTCCTATTTTTCAGAGATTTCTCTCTCAATGTTCTAAGGTTTCGAAATAGTCTTTGATTCTAGCTTTCCTAACCCGATATTTTTTCGGAAGGCGATGTAAATGCGCTCGGAGACATAATTTGTATACCGTATCACGTTCTTCTAAACGAGAATACCGAACTGCAAGAGCAACTCTAATGATAACAGTATCCAAAATACATAAATTCCTGGCACTATATCGTTGAAACCGTTAATTTCTCGCTTCACAATTTCCAACATTCACGTGAAACAGCTGCACGACGAGTACGATTGTACGAATTGAAAATTTATTCAGCTGATAAGAGAGCCAACTGACCAAATTACAGTTTCAGCTTCCTTGTACGTGCAAAGAGAGTTTCATTTTCTTTGTTTTCTGAATGTTCTTTGATATAAATAAATTTATAGCAAGAAAAACATAAGCCTAGGAGTTCTTGGTTTGAGATTTTTGTGATGCACTGACATAAGCGGAAGAAGATTAGCAGTTCGAACATTAACAAAATATCTAGAACTGCTGGAACAGTATTTTTTTTGGAAAAGAAAACGGGATGATGGTGAACATTTTAAAAGGAAAAATGTGAAATTTAGATCTTGAAGATGAATGAAGTTTGATCGTTACCACTATCCTATTGCTTTTCCTAAATCTCCCTTATTTTTTTGACAGCTTTCCGAAACAGCAACTTTTTTCCGAAAAAAAAAATCTAAAAATCACCCTTTTCAATCTGATAACCCCTAACACTGTCTTCTCAATCTATCTCTTCAAATCCATTATCAAACACCCACGTAATTGTTGCATTCTTTCTTCGGAACACGAATGATTGTATCAATTCGTCTTTTCCTGCCTCTTCCGCTGCCTCAAATGACCCCACCTTCACTTCTTCTAATTTATCGCTTTTCTGTGTTGTTGTTCTTGTTACTATTCAAAAGTTGTTGTATTTCAGGAAAAAGAGAGAAGAGAAGGTAGTGCGGGT</canonical>
            <polymorphic>ACGGTTTCAGTTACTTCCTATTTTTCAGAGATTTCTCTCTCAATGTTCTAAGGTTTCGAAATAGTCTTTGATTCTAGCTTTCCTAACCCGATATTTTTTCGGAAGGCGATGTAAATGCGCTCGGAGACATAATTTGTATACCGTATCACGTTCTTCTAAACGAGAATACCGAACTGCAAGAGCAACTCTAATGATAACAGTATCCAAAATACATAAATTCCTGGCACTATATCGTTGAAACCGTTAATTTCTCGCTTCACAATTTCCAACATTCACGTGAAACAGCTGCACGACGAGTACGATTGTACGAATTGAAAATTTATTCAGCTGATAAGAGAGCCAACTGACCAAATTACAGTTTCAGCTTCCTTGTACGTGCAAAGAGAGTTTCATTTTCTTTGTTTTCTGAATGTTCTTTGATATAAATAAATTTATAGCAAGAAAAACATAAGCCTAGGAGTTCTTGGTTTGAGATTTTTGTGATGCACTGACATAAGCGRAAGAAGATTAGCAGTTCGAACATTAACAAAATATCTAGAACTGCTGGAACAGTATTTTTTTTGGAAAAGAAAACGGGATGATGGTGAACATTTTAAAAGGAAAAATGTGAAATTTAGATCTTGAAGATGAATGAAGTTTGATCGTTACCACTATCCTATTGCTTTTCCTAAATCTCCCTTATTTTTTTGACAGCTTTCCGAAACAGCAACTTTTTTCCGAAAAAAAAAATCTAAAAATCACCCTTTTCAATCTGATAACCCCTAACACTGTCTTCTCAATCTATCTCTTCAAATCCATTATCAAACACCCACGTAATTGTTGCATTCTTTCTTCGGAACACGAATGATTGTATCAATTCGTCTTTTCCTGCCTCTTCCGCTGCCTCAAATGACCCCACCTTCACTTCTTCTAATTTATCGCTTTTCTGTGTTGTTGTTCTTGTTACTATTCAAAAGTTGTTGTATTTCAGGAAAAAGAGAGAAGAGAAGGTAGTGCGGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTACAGTTTCAGCTTCCTTGTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTAAAATGTTCACCATCATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTACAGTTTCAGCTTCCTTGTACGTGCAAAGAGAGTTTCATTTTCTTTGTTTTCTGAATGTTCTTTGATATAAATAAATTTATAGCAAGAAAAACATAAGCCTAGGAGTTCTTGGTTTGAGATTTTTGTGATGCACTGACATAAGCGGAAGAAGATTAGCAGTTCGAACATTAACAAAATATCTAGAACTGCTGGAACAGTATTTTTTTTGGAAAAGAAAACGGGATGATGGTGAACATTTTAAAAG</canonical_amplicon>
		<polymorphic_amplicon>ATTACAGTTTCAGCTTCCTTGTACGTGCAAAGAGAGTTTCATTTTCTTTGTTTTCTGAATGTTCTTTGATATAAATAAATTTATAGCAAGAAAAACATAAGCCTAGGAGTTCTTGGTTTGAGATTTTTGTGATGCACTGACATAAGCGRAAGAAGATTAGCAGTTCGAACATTAACAAAATATCTAGAACTGCTGGAACAGTATTTTTTTTGGAAAAGAAAACGGGATGATGGTGAACATTTTAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6727</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>253078</contig_pos>
        <strand>+</strand>
        <context>TTTCATTTTC[C/T]TTGTTTTCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAAATTACAGTTTCAGCTTCCTTGTACGTGCAAAGAGAGTTTCATTTTC</left_flank>
        <right_flank>TTGTTTTCTGAATGTTCTTTGATATAAATAAATTTATAGCAAGAAAAACA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACAAATCGGCTCGAAATTGGCGCTCAGGTTGCAACTCTGTTACAGGTCTTAAAAATATGATCTTGATAGCAACCCTTTTGAAAAATACTTTCTAAAATTTACGGTTTCAGTTACTTCCTATTTTTCAGAGATTTCTCTCTCAATGTTCTAAGGTTTCGAAATAGTCTTTGATTCTAGCTTTCCTAACCCGATATTTTTTCGGAAGGCGATGTAAATGCGCTCGGAGACATAATTTGTATACCGTATCACGTTCTTCTAAACGAGAATACCGAACTGCAAGAGCAACTCTAATGATAACAGTATCCAAAATACATAAATTCCTGGCACTATATCGTTGAAACCGTTAATTTCTCGCTTCACAATTTCCAACATTCACGTGAAACAGCTGCACGACGAGTACGATTGTACGAATTGAAAATTTATTCAGCTGATAAGAGAGCCAACTGACCAAATTACAGTTTCAGCTTCCTTGTACGTGCAAAGAGAGTTTCATTTTCTTTGTTTTCTGAATGTTCTTTGATATAAATAAATTTATAGCAAGAAAAACATAAGCCTAGGAGTTCTTGGTTTGAGATTTTTGTGATGCACTGACATAAGCGGAAGAAGATTAGCAGTTCGAACATTAACAAAATATCTAGAACTGCTGGAACAGTATTTTTTTTGGAAAAGAAAACGGGATGATGGTGAACATTTTAAAAGGAAAAATGTGAAATTTAGATCTTGAAGATGAATGAAGTTTGATCGTTACCACTATCCTATTGCTTTTCCTAAATCTCCCTTATTTTTTTGACAGCTTTCCGAAACAGCAACTTTTTTCCGAAAAAAAAAATCTAAAAATCACCCTTTTCAATCTGATAACCCCTAACACTGTCTTCTCAATCTATCTCTTCAAATCCATTATCAAACACCCACGTAATTGTTGCATTCTTTCTTCGGAACACGAATGATTGTATCAATTCGTCTTTTCCTGCCTCTTCCGCTGCCTCAAATGACCCCAC</canonical>
            <polymorphic>AGACAAATCGGCTCGAAATTGGCGCTCAGGTTGCAACTCTGTTACAGGTCTTAAAAATATGATCTTGATAGCAACCCTTTTGAAAAATACTTTCTAAAATTTACGGTTTCAGTTACTTCCTATTTTTCAGAGATTTCTCTCTCAATGTTCTAAGGTTTCGAAATAGTCTTTGATTCTAGCTTTCCTAACCCGATATTTTTTCGGAAGGCGATGTAAATGCGCTCGGAGACATAATTTGTATACCGTATCACGTTCTTCTAAACGAGAATACCGAACTGCAAGAGCAACTCTAATGATAACAGTATCCAAAATACATAAATTCCTGGCACTATATCGTTGAAACCGTTAATTTCTCGCTTCACAATTTCCAACATTCACGTGAAACAGCTGCACGACGAGTACGATTGTACGAATTGAAAATTTATTCAGCTGATAAGAGAGCCAACTGACCAAATTACAGTTTCAGCTTCCTTGTACGTGCAAAGAGAGTTTCATTTTCYTTGTTTTCTGAATGTTCTTTGATATAAATAAATTTATAGCAAGAAAAACATAAGCCTAGGAGTTCTTGGTTTGAGATTTTTGTGATGCACTGACATAAGCGGAAGAAGATTAGCAGTTCGAACATTAACAAAATATCTAGAACTGCTGGAACAGTATTTTTTTTGGAAAAGAAAACGGGATGATGGTGAACATTTTAAAAGGAAAAATGTGAAATTTAGATCTTGAAGATGAATGAAGTTTGATCGTTACCACTATCCTATTGCTTTTCCTAAATCTCCCTTATTTTTTTGACAGCTTTCCGAAACAGCAACTTTTTTCCGAAAAAAAAAATCTAAAAATCACCCTTTTCAATCTGATAACCCCTAACACTGTCTTCTCAATCTATCTCTTCAAATCCATTATCAAACACCCACGTAATTGTTGCATTCTTTCTTCGGAACACGAATGATTGTATCAATTCGTCTTTTCCTGCCTCTTCCGCTGCCTCAAATGACCCCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATACATAAATTCCTGGCACTA</pcr_primer_p1>
		<pcr_primer_p2>CTAGGCTTATGTTTTTCTTGCTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAATACATAAATTCCTGGCACTATATCGTTGAAACCGTTAATTTCTCGCTTCACAATTTCCAACATTCACGTGAAACAGCTGCACGACGAGTACGATTGTACGAATTGAAAATTTATTCAGCTGATAAGAGAGCCAACTGACCAAATTACAGTTTCAGCTTCCTTGTACGTGCAAAGAGAGTTTCATTTTCTTTGTTTTCTGAATGTTCTTTGATATAAATAAATTTATAGCAAGAAAAACATAAGCCTAG</canonical_amplicon>
		<polymorphic_amplicon>AAATACATAAATTCCTGGCACTATATCGTTGAAACCGTTAATTTCTCGCTTCACAATTTCCAACATTCACGTGAAACAGCTGCACGACGAGTACGATTGTACGAATTGAAAATTTATTCAGCTGATAAGAGAGCCAACTGACCAAATTACAGTTTCAGCTTCCTTGTACGTGCAAAGAGAGTTTCATTTTCYTTGTTTTCTGAATGTTCTTTGATATAAATAAATTTATAGCAAGAAAAACATAAGCCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6728</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>252980</contig_pos>
        <strand>+</strand>
        <context>ACGACGAGTA[A/C]GATTGTACGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTCGCTTCACAATTTCCAACATTCACGTGAAACAGCTGCACGACGAGTA</left_flank>
        <right_flank>GATTGTACGAATTGAAAATTTATTCAGCTGATAAGAGAGCCAACTGACCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAAGACATTGAAAAACGTTCAACTGACATTACATTTCTGATATCATTCTGAACATTTTAACTGTTGAACATTTTTTGATATCTTTCACAGGAACCAAGACAAATCGGCTCGAAATTGGCGCTCAGGTTGCAACTCTGTTACAGGTCTTAAAAATATGATCTTGATAGCAACCCTTTTGAAAAATACTTTCTAAAATTTACGGTTTCAGTTACTTCCTATTTTTCAGAGATTTCTCTCTCAATGTTCTAAGGTTTCGAAATAGTCTTTGATTCTAGCTTTCCTAACCCGATATTTTTTCGGAAGGCGATGTAAATGCGCTCGGAGACATAATTTGTATACCGTATCACGTTCTTCTAAACGAGAATACCGAACTGCAAGAGCAACTCTAATGATAACAGTATCCAAAATACATAAATTCCTGGCACTATATCGTTGAAACCGTTAATTTCTCGCTTCACAATTTCCAACATTCACGTGAAACAGCTGCACGACGAGTACGATTGTACGAATTGAAAATTTATTCAGCTGATAAGAGAGCCAACTGACCAAATTACAGTTTCAGCTTCCTTGTACGTGCAAAGAGAGTTTCATTTTCTTTGTTTTCTGAATGTTCTTTGATATAAATAAATTTATAGCAAGAAAAACATAAGCCTAGGAGTTCTTGGTTTGAGATTTTTGTGATGCACTGACATAAGCGGAAGAAGATTAGCAGTTCGAACATTAACAAAATATCTAGAACTGCTGGAACAGTATTTTTTTTGGAAAAGAAAACGGGATGATGGTGAACATTTTAAAAGGAAAAATGTGAAATTTAGATCTTGAAGATGAATGAAGTTTGATCGTTACCACTATCCTATTGCTTTTCCTAAATCTCCCTTATTTTTTTGACAGCTTTCCGAAACAGCAACTTTTTTCCGAAAAAAAAAATCTAAAAATCACCCTTTTCAATCTGATAACCCCTAACACTGTCTTCTCAATCTATCTCTTCAAATCCATTA</canonical>
            <polymorphic>TGAAAGACATTGAAAAACGTTCAACTGACATTACATTTCTGATATCATTCTGAACATTTTAACTGTTGAACATTTTTTGATATCTTTCACAGGAACCAAGACAAATCGGCTCGAAATTGGCGCTCAGGTTGCAACTCTGTTACAGGTCTTAAAAATATGATCTTGATAGCAACCCTTTTGAAAAATACTTTCTAAAATTTACGGTTTCAGTTACTTCCTATTTTTCAGAGATTTCTCTCTCAATGTTCTAAGGTTTCGAAATAGTCTTTGATTCTAGCTTTCCTAACCCGATATTTTTTCGGAAGGCGATGTAAATGCGCTCGGAGACATAATTTGTATACCGTATCACGTTCTTCTAAACGAGAATACCGAACTGCAAGAGCAACTCTAATGATAACAGTATCCAAAATACATAAATTCCTGGCACTATATCGTTGAAACCGTTAATTTCTCGCTTCACAATTTCCAACATTCACGTGAAACAGCTGCACGACGAGTAMGATTGTACGAATTGAAAATTTATTCAGCTGATAAGAGAGCCAACTGACCAAATTACAGTTTCAGCTTCCTTGTACGTGCAAAGAGAGTTTCATTTTCTTTGTTTTCTGAATGTTCTTTGATATAAATAAATTTATAGCAAGAAAAACATAAGCCTAGGAGTTCTTGGTTTGAGATTTTTGTGATGCACTGACATAAGCGGAAGAAGATTAGCAGTTCGAACATTAACAAAATATCTAGAACTGCTGGAACAGTATTTTTTTTGGAAAAGAAAACGGGATGATGGTGAACATTTTAAAAGGAAAAATGTGAAATTTAGATCTTGAAGATGAATGAAGTTTGATCGTTACCACTATCCTATTGCTTTTCCTAAATCTCCCTTATTTTTTTGACAGCTTTCCGAAACAGCAACTTTTTTCCGAAAAAAAAAATCTAAAAATCACCCTTTTCAATCTGATAACCCCTAACACTGTCTTCTCAATCTATCTCTTCAAATCCATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>498 427 67 8</canonical_bands>
                <polymorphic_bands>506 427 67</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATACATAAATTCCTGGCACTA</pcr_primer_p1>
		<pcr_primer_p2>CTAGGCTTATGTTTTTCTTGCTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAATACATAAATTCCTGGCACTATATCGTTGAAACCGTTAATTTCTCGCTTCACAATTTCCAACATTCACGTGAAACAGCTGCACGACGAGTACGATTGTACGAATTGAAAATTTATTCAGCTGATAAGAGAGCCAACTGACCAAATTACAGTTTCAGCTTCCTTGTACGTGCAAAGAGAGTTTCATTTTCTTTGTTTTCTGAATGTTCTTTGATATAAATAAATTTATAGCAAGAAAAACATAAGCCTAG</canonical_amplicon>
		<polymorphic_amplicon>AAATACATAAATTCCTGGCACTATATCGTTGAAACCGTTAATTTCTCGCTTCACAATTTCCAACATTCACGTGAAACAGCTGCACGACGAGTAMGATTGTACGAATTGAAAATTTATTCAGCTGATAAGAGAGCCAACTGACCAAATTACAGTTTCAGCTTCCTTGTACGTGCAAAGAGAGTTTCATTTTCTTTGTTTTCTGAATGTTCTTTGATATAAATAAATTTATAGCAAGAAAAACATAAGCCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6729</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>252925</contig_pos>
        <strand>+</strand>
        <context>TTGAAACCGT[A/T]AATTTCTCGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAACAGTATCCAAAATACATAAATTCCTGGCACTATATCGTTGAAACCGT</left_flank>
        <right_flank>AATTTCTCGCTTCACAATTTCCAACATTCACGTGAAACAGCTGCACGACG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAAACTCTAATAGAATTGCACCCTTACTATTCAGCCAATTTTCCTGATTTCCTGTGAAAGACATTGAAAAACGTTCAACTGACATTACATTTCTGATATCATTCTGAACATTTTAACTGTTGAACATTTTTTGATATCTTTCACAGGAACCAAGACAAATCGGCTCGAAATTGGCGCTCAGGTTGCAACTCTGTTACAGGTCTTAAAAATATGATCTTGATAGCAACCCTTTTGAAAAATACTTTCTAAAATTTACGGTTTCAGTTACTTCCTATTTTTCAGAGATTTCTCTCTCAATGTTCTAAGGTTTCGAAATAGTCTTTGATTCTAGCTTTCCTAACCCGATATTTTTTCGGAAGGCGATGTAAATGCGCTCGGAGACATAATTTGTATACCGTATCACGTTCTTCTAAACGAGAATACCGAACTGCAAGAGCAACTCTAATGATAACAGTATCCAAAATACATAAATTCCTGGCACTATATCGTTGAAACCGTTAATTTCTCGCTTCACAATTTCCAACATTCACGTGAAACAGCTGCACGACGAGTACGATTGTACGAATTGAAAATTTATTCAGCTGATAAGAGAGCCAACTGACCAAATTACAGTTTCAGCTTCCTTGTACGTGCAAAGAGAGTTTCATTTTCTTTGTTTTCTGAATGTTCTTTGATATAAATAAATTTATAGCAAGAAAAACATAAGCCTAGGAGTTCTTGGTTTGAGATTTTTGTGATGCACTGACATAAGCGGAAGAAGATTAGCAGTTCGAACATTAACAAAATATCTAGAACTGCTGGAACAGTATTTTTTTTGGAAAAGAAAACGGGATGATGGTGAACATTTTAAAAGGAAAAATGTGAAATTTAGATCTTGAAGATGAATGAAGTTTGATCGTTACCACTATCCTATTGCTTTTCCTAAATCTCCCTTATTTTTTTGACAGCTTTCCGAAACAGCAACTTTTTTCCGAAAAAAAAAATCTAAAAATCACCCTT</canonical>
            <polymorphic>GTAAACTCTAATAGAATTGCACCCTTACTATTCAGCCAATTTTCCTGATTTCCTGTGAAAGACATTGAAAAACGTTCAACTGACATTACATTTCTGATATCATTCTGAACATTTTAACTGTTGAACATTTTTTGATATCTTTCACAGGAACCAAGACAAATCGGCTCGAAATTGGCGCTCAGGTTGCAACTCTGTTACAGGTCTTAAAAATATGATCTTGATAGCAACCCTTTTGAAAAATACTTTCTAAAATTTACGGTTTCAGTTACTTCCTATTTTTCAGAGATTTCTCTCTCAATGTTCTAAGGTTTCGAAATAGTCTTTGATTCTAGCTTTCCTAACCCGATATTTTTTCGGAAGGCGATGTAAATGCGCTCGGAGACATAATTTGTATACCGTATCACGTTCTTCTAAACGAGAATACCGAACTGCAAGAGCAACTCTAATGATAACAGTATCCAAAATACATAAATTCCTGGCACTATATCGTTGAAACCGTWAATTTCTCGCTTCACAATTTCCAACATTCACGTGAAACAGCTGCACGACGAGTACGATTGTACGAATTGAAAATTTATTCAGCTGATAAGAGAGCCAACTGACCAAATTACAGTTTCAGCTTCCTTGTACGTGCAAAGAGAGTTTCATTTTCTTTGTTTTCTGAATGTTCTTTGATATAAATAAATTTATAGCAAGAAAAACATAAGCCTAGGAGTTCTTGGTTTGAGATTTTTGTGATGCACTGACATAAGCGGAAGAAGATTAGCAGTTCGAACATTAACAAAATATCTAGAACTGCTGGAACAGTATTTTTTTTGGAAAAGAAAACGGGATGATGGTGAACATTTTAAAAGGAAAAATGTGAAATTTAGATCTTGAAGATGAATGAAGTTTGATCGTTACCACTATCCTATTGCTTTTCCTAAATCTCCCTTATTTTTTTGACAGCTTTCCGAAACAGCAACTTTTTTCCGAAAAAAAAAATCTAAAAATCACCCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>295 279 152 114 90 70</canonical_bands>
                <polymorphic_bands>574 152 114 90 70</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAAGAGCAACTCTAATGATAAC</pcr_primer_p1>
		<pcr_primer_p2>ATCAAAGAACATTCAGAAAACAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GCAAGAGCAACTCTAATGATAACAGTATCCAAAATACATAAATTCCTGGCACTATATCGTTGAAACCGTTAATTTCTCGCTTCACAATTTCCAACATTCACGTGAAACAGCTGCACGACGAGTACGATTGTACGAATTGAAAATTTATTCAGCTGATAAGAGAGCCAACTGACCAAATTACAGTTTCAGCTTCCTTGTACGTGCAAAGAGAGTTTCATTTTCTTTGTTTTCTGAATGTTCTTTGAT</canonical_amplicon>
		<polymorphic_amplicon>GCAAGAGCAACTCTAATGATAACAGTATCCAAAATACATAAATTCCTGGCACTATATCGTTGAAACCGTWAATTTCTCGCTTCACAATTTCCAACATTCACGTGAAACAGCTGCACGACGAGTACGATTGTACGAATTGAAAATTTATTCAGCTGATAAGAGAGCCAACTGACCAAATTACAGTTTCAGCTTCCTTGTACGTGCAAAGAGAGTTTCATTTTCTTTGTTTTCTGAATGTTCTTTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6730</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>256098</contig_pos>
        <strand>+</strand>
        <context>GCGTTTCGAT[A/G]CTAAGAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCACTTTATCATCATTTCATGTTCTTTTTTCTACTGAATGCGTTTCGAT</left_flank>
        <right_flank>CTAAGAAAATGGGCAGCTCTTTTTTTTATGGCTGATGCAATCCTAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTTTCAACATTTGAAGAAGAAACAAATTTCGGTTAAATTTCAGTTTCAATTTCTCAAAGGTTGTTTTTATTAATTTTAATCCGGCTTGGTCATCAATGTCACCAGAATTTTCGAAACAGTAATTTTTTGAATTTCTAATTTTTTTCTTTGAAATTACAGTATAATGGAAATATACATTTTGAACTTTCGAAAAATATCCGAGTTCTTTTTTTTGGTATTGCCGAATTTCCTAACTTTTCCTCCCATTCCGTTTTTTTTCTCTCCAATAAAACTGTTATCAGTATCTAAACAAACAAGAACTGACCCCTACCCAACTGTCTGCGCGTCTCATCCCCATACATTTTCTCCCCTGTTTAATATTTTCATCTAATTTCTCTCCGATTTGACCGGAAATATTGTTATTCTTGTCGCTGCCCGTCTTCTACCTAAAAATATTTTCTTATCTCAATCACTTTATCATCATTTCATGTTCTTTTTTCTACTGAATGCGTTTCGATGCTAAGAAAATGGGCAGCTCTTTTTTTTATGGCTGATGCAATCCTAAAAAATTGCGCGGTCACTCACTTTTTTCGTGTTTTTTTGTGTCCTCACACAAATCTCAAAGTCAGCATTTTTCACCTTTTCTGGTCACAAATCCCCCCACTTTTGCTCAGTGTTTTATCATCATTTTTCATCTGTCTCAAGCCCGAATTGTCAGCAATTCTAGCTCATTGAGCTCATTTTCTTCCTCTTTCGCTTCTAAATTCAATTTTATGCTTCCCAAAATTTTATAAATGTCCAGGTAAAAATGACCGCTGAAAATGAGCCGCTGAAATCTAGAGAGCCAGAAGAGCTGGTAAAAAATGGAGACGAAGAAGAAGGAGATGGAAAAGGACTTGCTAAGTCATTGACACTTTTTAATGGGGTCTCAATTATTGTTGGATGTATTATTGGCTCTGGAATTTTTGTATCGCCTACTGGAGTTCAAGAACGTAAGATTATGGAAATTTTAAAAAGTT</canonical>
            <polymorphic>TACTTTCAACATTTGAAGAAGAAACAAATTTCGGTTAAATTTCAGTTTCAATTTCTCAAAGGTTGTTTTTATTAATTTTAATCCGGCTTGGTCATCAATGTCACCAGAATTTTCGAAACAGTAATTTTTTGAATTTCTAATTTTTTTCTTTGAAATTACAGTATAATGGAAATATACATTTTGAACTTTCGAAAAATATCCGAGTTCTTTTTTTTGGTATTGCCGAATTTCCTAACTTTTCCTCCCATTCCGTTTTTTTTCTCTCCAATAAAACTGTTATCAGTATCTAAACAAACAAGAACTGACCCCTACCCAACTGTCTGCGCGTCTCATCCCCATACATTTTCTCCCCTGTTTAATATTTTCATCTAATTTCTCTCCGATTTGACCGGAAATATTGTTATTCTTGTCGCTGCCCGTCTTCTACCTAAAAATATTTTCTTATCTCAATCACTTTATCATCATTTCATGTTCTTTTTTCTACTGAATGCGTTTCGATRCTAAGAAAATGGGCAGCTCTTTTTTTTATGGCTGATGCAATCCTAAAAAATTGCGCGGTCACTCACTTTTTTCGTGTTTTTTTGTGTCCTCACACAAATCTCAAAGTCAGCATTTTTCACCTTTTCTGGTCACAAATCCCCCCACTTTTGCTCAGTGTTTTATCATCATTTTTCATCTGTCTCAAGCCCGAATTGTCAGCAATTCTAGCTCATTGAGCTCATTTTCTTCCTCTTTCGCTTCTAAATTCAATTTTATGCTTCCCAAAATTTTATAAATGTCCAGGTAAAAATGACCGCTGAAAATGAGCCGCTGAAATCTAGAGAGCCAGAAGAGCTGGTAAAAAATGGAGACGAAGAAGAAGGAGATGGAAAAGGACTTGCTAAGTCATTGACACTTTTTAATGGGGTCTCAATTATTGTTGGATGTATTATTGGCTCTGGAATTTTTGTATCGCCTACTGGAGTTCAAGAACGTAAGATTATGGAAATTTTAAAAAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTAATTTCTCTCCGATTTGAC</pcr_primer_p1>
		<pcr_primer_p2>AAATGCTGACTTTGAGATTTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCTAATTTCTCTCCGATTTGACCGGAAATATTGTTATTCTTGTCGCTGCCCGTCTTCTACCTAAAAATATTTTCTTATCTCAATCACTTTATCATCATTTCATGTTCTTTTTTCTACTGAATGCGTTTCGATGCTAAGAAAATGGGCAGCTCTTTTTTTTATGGCTGATGCAATCCTAAAAAATTGCGCGGTCACTCACTTTTTTCGTGTTTTTTTGTGTCCTCACACAAATCTCAAAGTCAGCATTT</canonical_amplicon>
		<polymorphic_amplicon>ATCTAATTTCTCTCCGATTTGACCGGAAATATTGTTATTCTTGTCGCTGCCCGTCTTCTACCTAAAAATATTTTCTTATCTCAATCACTTTATCATCATTTCATGTTCTTTTTTCTACTGAATGCGTTTCGATRCTAAGAAAATGGGCAGCTCTTTTTTTTATGGCTGATGCAATCCTAAAAAATTGCGCGGTCACTCACTTTTTTCGTGTTTTTTTGTGTCCTCACACAAATCTCAAAGTCAGCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6731</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>256149</contig_pos>
        <strand></strand>
        <context>TCCTAAAAAA[T/C]TGCGCGGTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTAAGAAAATGGGCAGCTCTTTTTTTTATGGCTGATGCAATCCTAAAAAA</left_flank>
        <right_flank>TGCGCGGTCACTCACTTTTTTCGTGTTTTTTTGTGTCCTCACACAAATCT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTCAAAGGTTGTTTTTATTAATTTTAATCCGGCTTGGTCATCAATGTCACCAGAATTTTCGAAACAGTAATTTTTTGAATTTCTAATTTTTTTCTTTGAAATTACAGTATAATGGAAATATACATTTTGAACTTTCGAAAAATATCCGAGTTCTTTTTTTTGGTATTGCCGAATTTCCTAACTTTTCCTCCCATTCCGTTTTTTTTCTCTCCAATAAAACTGTTATCAGTATCTAAACAAACAAGAACTGACCCCTACCCAACTGTCTGCGCGTCTCATCCCCATACATTTTCTCCCCTGTTTAATATTTTCATCTAATTTCTCTCCGATTTGACCGGAAATATTGTTATTCTTGTCGCTGCCCGTCTTCTACCTAAAAATATTTTCTTATCTCAATCACTTTATCATCATTTCATGTTCTTTTTTCTACTGAATGCGTTTCGATGCTAAGAAAATGGGCAGCTCTTTTTTTTATGGCTGATGCAATCCTAAAAAATTGCGCGGTCACTCACTTTTTTCGTGTTTTTTTGTGTCCTCACACAAATCTCAAAGTCAGCATTTTTCACCTTTTCTGGTCACAAATCCCCCCACTTTTGCTCAGTGTTTTATCATCATTTTTCATCTGTCTCAAGCCCGAATTGTCAGCAATTCTAGCTCATTGAGCTCATTTTCTTCCTCTTTCGCTTCTAAATTCAATTTTATGCTTCCCAAAATTTTATAAATGTCCAGGTAAAAATGACCGCTGAAAATGAGCCGCTGAAATCTAGAGAGCCAGAAGAGCTGGTAAAAAATGGAGACGAAGAAGAAGGAGATGGAAAAGGACTTGCTAAGTCATTGACACTTTTTAATGGGGTCTCAATTATTGTTGGATGTATTATTGGCTCTGGAATTTTTGTATCGCCTACTGGAGTTCAAGAACGTAAGATTATGGAAATTTTAAAAAGTTGAATTTTCAAAGCTGCTAGATTTTCTCTTGTAACCTTTAAAAATGATAATG</canonical>
            <polymorphic>TTTCTCAAAGGTTGTTTTTATTAATTTTAATCCGGCTTGGTCATCAATGTCACCAGAATTTTCGAAACAGTAATTTTTTGAATTTCTAATTTTTTTCTTTGAAATTACAGTATAATGGAAATATACATTTTGAACTTTCGAAAAATATCCGAGTTCTTTTTTTTGGTATTGCCGAATTTCCTAACTTTTCCTCCCATTCCGTTTTTTTTCTCTCCAATAAAACTGTTATCAGTATCTAAACAAACAAGAACTGACCCCTACCCAACTGTCTGCGCGTCTCATCCCCATACATTTTCTCCCCTGTTTAATATTTTCATCTAATTTCTCTCCGATTTGACCGGAAATATTGTTATTCTTGTCGCTGCCCGTCTTCTACCTAAAAATATTTTCTTATCTCAATCACTTTATCATCATTTCATGTTCTTTTTTCTACTGAATGCGTTTCGATGCTAAGAAAATGGGCAGCTCTTTTTTTTATGGCTGATGCAATCCTAAAAAAYTGCGCGGTCACTCACTTTTTTCGTGTTTTTTTGTGTCCTCACACAAATCTCAAAGTCAGCATTTTTCACCTTTTCTGGTCACAAATCCCCCCACTTTTGCTCAGTGTTTTATCATCATTTTTCATCTGTCTCAAGCCCGAATTGTCAGCAATTCTAGCTCATTGAGCTCATTTTCTTCCTCTTTCGCTTCTAAATTCAATTTTATGCTTCCCAAAATTTTATAAATGTCCAGGTAAAAATGACCGCTGAAAATGAGCCGCTGAAATCTAGAGAGCCAGAAGAGCTGGTAAAAAATGGAGACGAAGAAGAAGGAGATGGAAAAGGACTTGCTAAGTCATTGACACTTTTTAATGGGGTCTCAATTATTGTTGGATGTATTATTGGCTCTGGAATTTTTGTATCGCCTACTGGAGTTCAAGAACGTAAGATTATGGAAATTTTAAAAAGTTGAATTTTCAAAGCTGCTAGATTTTCTCTTGTAACCTTTAAAAATGATAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>178 146 145 142 72 50 45 43 34 30 22 17 15 15 15 10 9 7 5</canonical_bands>
                <polymorphic_bands>320 146 145 72 50 45 43 34 30 22 17 15 15 15 10 9 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTAATTTCTCTCCGATTTGAC</pcr_primer_p1>
		<pcr_primer_p2>AAATGCTGACTTTGAGATTTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCTAATTTCTCTCCGATTTGACCGGAAATATTGTTATTCTTGTCGCTGCCCGTCTTCTACCTAAAAATATTTTCTTATCTCAATCACTTTATCATCATTTCATGTTCTTTTTTCTACTGAATGCGTTTCGATGCTAAGAAAATGGGCAGCTCTTTTTTTTATGGCTGATGCAATCCTAAAAAATTGCGCGGTCACTCACTTTTTTCGTGTTTTTTTGTGTCCTCACACAAATCTCAAAGTCAGCATTT</canonical_amplicon>
		<polymorphic_amplicon>ATCTAATTTCTCTCCGATTTGACCGGAAATATTGTTATTCTTGTCGCTGCCCGTCTTCTACCTAAAAATATTTTCTTATCTCAATCACTTTATCATCATTTCATGTTCTTTTTTCTACTGAATGCGTTTCGATGCTAAGAAAATGGGCAGCTCTTTTTTTTATGGCTGATGCAATCCTAAAAAAYTGCGCGGTCACTCACTTTTTTCGTGTTTTTTTGTGTCCTCACACAAATCTCAAAGTCAGCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6732</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>256217</contig_pos>
        <strand></strand>
        <context>AGCATTTTTC[A/C]CCTTTTCTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTCGTGTTTTTTTGTGTCCTCACACAAATCTCAAAGTCAGCATTTTTC</left_flank>
        <right_flank>CCTTTTCTGGTCACAAATCCCCCCACTTTTGCTCAGTGTTTTATCATCAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTAATTTTTTGAATTTCTAATTTTTTTCTTTGAAATTACAGTATAATGGAAATATACATTTTGAACTTTCGAAAAATATCCGAGTTCTTTTTTTTGGTATTGCCGAATTTCCTAACTTTTCCTCCCATTCCGTTTTTTTTCTCTCCAATAAAACTGTTATCAGTATCTAAACAAACAAGAACTGACCCCTACCCAACTGTCTGCGCGTCTCATCCCCATACATTTTCTCCCCTGTTTAATATTTTCATCTAATTTCTCTCCGATTTGACCGGAAATATTGTTATTCTTGTCGCTGCCCGTCTTCTACCTAAAAATATTTTCTTATCTCAATCACTTTATCATCATTTCATGTTCTTTTTTCTACTGAATGCGTTTCGATGCTAAGAAAATGGGCAGCTCTTTTTTTTATGGCTGATGCAATCCTAAAAAATTGCGCGGTCACTCACTTTTTTCGTGTTTTTTTGTGTCCTCACACAAATCTCAAAGTCAGCATTTTTCACCTTTTCTGGTCACAAATCCCCCCACTTTTGCTCAGTGTTTTATCATCATTTTTCATCTGTCTCAAGCCCGAATTGTCAGCAATTCTAGCTCATTGAGCTCATTTTCTTCCTCTTTCGCTTCTAAATTCAATTTTATGCTTCCCAAAATTTTATAAATGTCCAGGTAAAAATGACCGCTGAAAATGAGCCGCTGAAATCTAGAGAGCCAGAAGAGCTGGTAAAAAATGGAGACGAAGAAGAAGGAGATGGAAAAGGACTTGCTAAGTCATTGACACTTTTTAATGGGGTCTCAATTATTGTTGGATGTATTATTGGCTCTGGAATTTTTGTATCGCCTACTGGAGTTCAAGAACGTAAGATTATGGAAATTTTAAAAAGTTGAATTTTCAAAGCTGCTAGATTTTCTCTTGTAACCTTTAAAAATGATAATGTGCAGGTCAAATTGTAATTCACGCAATATTTTGGAGGTTGCAGGTGGTAATAACACTAGACTTTTCAA</canonical>
            <polymorphic>AGTAATTTTTTGAATTTCTAATTTTTTTCTTTGAAATTACAGTATAATGGAAATATACATTTTGAACTTTCGAAAAATATCCGAGTTCTTTTTTTTGGTATTGCCGAATTTCCTAACTTTTCCTCCCATTCCGTTTTTTTTCTCTCCAATAAAACTGTTATCAGTATCTAAACAAACAAGAACTGACCCCTACCCAACTGTCTGCGCGTCTCATCCCCATACATTTTCTCCCCTGTTTAATATTTTCATCTAATTTCTCTCCGATTTGACCGGAAATATTGTTATTCTTGTCGCTGCCCGTCTTCTACCTAAAAATATTTTCTTATCTCAATCACTTTATCATCATTTCATGTTCTTTTTTCTACTGAATGCGTTTCGATGCTAAGAAAATGGGCAGCTCTTTTTTTTATGGCTGATGCAATCCTAAAAAATTGCGCGGTCACTCACTTTTTTCGTGTTTTTTTGTGTCCTCACACAAATCTCAAAGTCAGCATTTTTCMCCTTTTCTGGTCACAAATCCCCCCACTTTTGCTCAGTGTTTTATCATCATTTTTCATCTGTCTCAAGCCCGAATTGTCAGCAATTCTAGCTCATTGAGCTCATTTTCTTCCTCTTTCGCTTCTAAATTCAATTTTATGCTTCCCAAAATTTTATAAATGTCCAGGTAAAAATGACCGCTGAAAATGAGCCGCTGAAATCTAGAGAGCCAGAAGAGCTGGTAAAAAATGGAGACGAAGAAGAAGGAGATGGAAAAGGACTTGCTAAGTCATTGACACTTTTTAATGGGGTCTCAATTATTGTTGGATGTATTATTGGCTCTGGAATTTTTGTATCGCCTACTGGAGTTCAAGAACGTAAGATTATGGAAATTTTAAAAAGTTGAATTTTCAAAGCTGCTAGATTTTCTCTTGTAACCTTTAAAAATGATAATGTGCAGGTCAAATTGTAATTCACGCAATATTTTGGAGGTTGCAGGTGGTAATAACACTAGACTTTTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>334 237 159 108 25 25 19 13 13 13 12 11 10 9 6 4 2</canonical_bands>
                <polymorphic_bands>334 237 159 108 38 25 19 13 13 12 11 10 9 6 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTACTGAATGCGTTTC</pcr_primer_p1>
		<pcr_primer_p2>CAATGAGCTAGAATTGCTGAC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTACTGAATGCGTTTCGATGCTAAGAAAATGGGCAGCTCTTTTTTTTATGGCTGATGCAATCCTAAAAAATTGCGCGGTCACTCACTTTTTTCGTGTTTTTTTGTGTCCTCACACAAATCTCAAAGTCAGCATTTTTCACCTTTTCTGGTCACAAATCCCCCCACTTTTGCTCAGTGTTTTATCATCATTTTTCATCTGTCTCAAGCCCGAATTGTCAGCAATTCTAGCTCATTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTACTGAATGCGTTTCGATGCTAAGAAAATGGGCAGCTCTTTTTTTTATGGCTGATGCAATCCTAAAAAATTGCGCGGTCACTCACTTTTTTCGTGTTTTTTTGTGTCCTCACACAAATCTCAAAGTCAGCATTTTTCMCCTTTTCTGGTCACAAATCCCCCCACTTTTGCTCAGTGTTTTATCATCATTTTTCATCTGTCTCAAGCCCGAATTGTCAGCAATTCTAGCTCATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6733</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>256238</contig_pos>
        <strand>+</strand>
        <context>TCACAAATCC[C/G]CCCACTTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCACACAAATCTCAAAGTCAGCATTTTTCACCTTTTCTGGTCACAAATCC</left_flank>
        <right_flank>CCCACTTTTGCTCAGTGTTTTATCATCATTTTTCATCTGTCTCAAGCCCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTCTTTGAAATTACAGTATAATGGAAATATACATTTTGAACTTTCGAAAAATATCCGAGTTCTTTTTTTTGGTATTGCCGAATTTCCTAACTTTTCCTCCCATTCCGTTTTTTTTCTCTCCAATAAAACTGTTATCAGTATCTAAACAAACAAGAACTGACCCCTACCCAACTGTCTGCGCGTCTCATCCCCATACATTTTCTCCCCTGTTTAATATTTTCATCTAATTTCTCTCCGATTTGACCGGAAATATTGTTATTCTTGTCGCTGCCCGTCTTCTACCTAAAAATATTTTCTTATCTCAATCACTTTATCATCATTTCATGTTCTTTTTTCTACTGAATGCGTTTCGATGCTAAGAAAATGGGCAGCTCTTTTTTTTATGGCTGATGCAATCCTAAAAAATTGCGCGGTCACTCACTTTTTTCGTGTTTTTTTGTGTCCTCACACAAATCTCAAAGTCAGCATTTTTCACCTTTTCTGGTCACAAATCCCCCCACTTTTGCTCAGTGTTTTATCATCATTTTTCATCTGTCTCAAGCCCGAATTGTCAGCAATTCTAGCTCATTGAGCTCATTTTCTTCCTCTTTCGCTTCTAAATTCAATTTTATGCTTCCCAAAATTTTATAAATGTCCAGGTAAAAATGACCGCTGAAAATGAGCCGCTGAAATCTAGAGAGCCAGAAGAGCTGGTAAAAAATGGAGACGAAGAAGAAGGAGATGGAAAAGGACTTGCTAAGTCATTGACACTTTTTAATGGGGTCTCAATTATTGTTGGATGTATTATTGGCTCTGGAATTTTTGTATCGCCTACTGGAGTTCAAGAACGTAAGATTATGGAAATTTTAAAAAGTTGAATTTTCAAAGCTGCTAGATTTTCTCTTGTAACCTTTAAAAATGATAATGTGCAGGTCAAATTGTAATTCACGCAATATTTTGGAGGTTGCAGGTGGTAATAACACTAGACTTTTCAAAACTTGTCAAACCAAATTGAA</canonical>
            <polymorphic>TTTTTTTCTTTGAAATTACAGTATAATGGAAATATACATTTTGAACTTTCGAAAAATATCCGAGTTCTTTTTTTTGGTATTGCCGAATTTCCTAACTTTTCCTCCCATTCCGTTTTTTTTCTCTCCAATAAAACTGTTATCAGTATCTAAACAAACAAGAACTGACCCCTACCCAACTGTCTGCGCGTCTCATCCCCATACATTTTCTCCCCTGTTTAATATTTTCATCTAATTTCTCTCCGATTTGACCGGAAATATTGTTATTCTTGTCGCTGCCCGTCTTCTACCTAAAAATATTTTCTTATCTCAATCACTTTATCATCATTTCATGTTCTTTTTTCTACTGAATGCGTTTCGATGCTAAGAAAATGGGCAGCTCTTTTTTTTATGGCTGATGCAATCCTAAAAAATTGCGCGGTCACTCACTTTTTTCGTGTTTTTTTGTGTCCTCACACAAATCTCAAAGTCAGCATTTTTCACCTTTTCTGGTCACAAATCCSCCCACTTTTGCTCAGTGTTTTATCATCATTTTTCATCTGTCTCAAGCCCGAATTGTCAGCAATTCTAGCTCATTGAGCTCATTTTCTTCCTCTTTCGCTTCTAAATTCAATTTTATGCTTCCCAAAATTTTATAAATGTCCAGGTAAAAATGACCGCTGAAAATGAGCCGCTGAAATCTAGAGAGCCAGAAGAGCTGGTAAAAAATGGAGACGAAGAAGAAGGAGATGGAAAAGGACTTGCTAAGTCATTGACACTTTTTAATGGGGTCTCAATTATTGTTGGATGTATTATTGGCTCTGGAATTTTTGTATCGCCTACTGGAGTTCAAGAACGTAAGATTATGGAAATTTTAAAAAGTTGAATTTTCAAAGCTGCTAGATTTTCTCTTGTAACCTTTAAAAATGATAATGTGCAGGTCAAATTGTAATTCACGCAATATTTTGGAGGTTGCAGGTGGTAATAACACTAGACTTTTCAAAACTTGTCAAACCAAATTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCCTCACACAAATCTCAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TCTTCTGGCTCTCTAGATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTCCTCACACAAATCTCAAAGTCAGCATTTTTCACCTTTTCTGGTCACAAATCCCCCCACTTTTGCTCAGTGTTTTATCATCATTTTTCATCTGTCTCAAGCCCGAATTGTCAGCAATTCTAGCTCATTGAGCTCATTTTCTTCCTCTTTCGCTTCTAAATTCAATTTTATGCTTCCCAAAATTTTATAAATGTCCAGGTAAAAATGACCGCTGAAAATGAGCCGCTGAAATCTAGAGAGCCAGAAGA</canonical_amplicon>
		<polymorphic_amplicon>GTCCTCACACAAATCTCAAAGTCAGCATTTTTCACCTTTTCTGGTCACAAATCCSCCCACTTTTGCTCAGTGTTTTATCATCATTTTTCATCTGTCTCAAGCCCGAATTGTCAGCAATTCTAGCTCATTGAGCTCATTTTCTTCCTCTTTCGCTTCTAAATTCAATTTTATGCTTCCCAAAATTTTATAAATGTCCAGGTAAAAATGACCGCTGAAAATGAGCCGCTGAAATCTAGAGAGCCAGAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6734</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>256438</contig_pos>
        <strand>+</strand>
        <context>AAGAGCTGGT[A/T]AAAAATGGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGACCGCTGAAAATGAGCCGCTGAAATCTAGAGAGCCAGAAGAGCTGGT</left_flank>
        <right_flank>AAAAATGGAGACGAAGAAGAAGGAGATGGAAAAGGACTTGCTAAGTCATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTTCTCCCCTGTTTAATATTTTCATCTAATTTCTCTCCGATTTGACCGGAAATATTGTTATTCTTGTCGCTGCCCGTCTTCTACCTAAAAATATTTTCTTATCTCAATCACTTTATCATCATTTCATGTTCTTTTTTCTACTGAATGCGTTTCGATGCTAAGAAAATGGGCAGCTCTTTTTTTTATGGCTGATGCAATCCTAAAAAATTGCGCGGTCACTCACTTTTTTCGTGTTTTTTTGTGTCCTCACACAAATCTCAAAGTCAGCATTTTTCACCTTTTCTGGTCACAAATCCCCCCACTTTTGCTCAGTGTTTTATCATCATTTTTCATCTGTCTCAAGCCCGAATTGTCAGCAATTCTAGCTCATTGAGCTCATTTTCTTCCTCTTTCGCTTCTAAATTCAATTTTATGCTTCCCAAAATTTTATAAATGTCCAGGTAAAAATGACCGCTGAAAATGAGCCGCTGAAATCTAGAGAGCCAGAAGAGCTGGTAAAAAATGGAGACGAAGAAGAAGGAGATGGAAAAGGACTTGCTAAGTCATTGACACTTTTTAATGGGGTCTCAATTATTGTTGGATGTATTATTGGCTCTGGAATTTTTGTATCGCCTACTGGAGTTCAAGAACGTAAGATTATGGAAATTTTAAAAAGTTGAATTTTCAAAGCTGCTAGATTTTCTCTTGTAACCTTTAAAAATGATAATGTGCAGGTCAAATTGTAATTCACGCAATATTTTGGAGGTTGCAGGTGGTAATAACACTAGACTTTTCAAAACTTGTCAAACCAAATTGAAAGTGATTTTTTGATTTTTTTAATTTTTTATCAAAAATTGCTCTCTCGAAGTTTTAAGTGTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGCTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGC</canonical>
            <polymorphic>CATTTTCTCCCCTGTTTAATATTTTCATCTAATTTCTCTCCGATTTGACCGGAAATATTGTTATTCTTGTCGCTGCCCGTCTTCTACCTAAAAATATTTTCTTATCTCAATCACTTTATCATCATTTCATGTTCTTTTTTCTACTGAATGCGTTTCGATGCTAAGAAAATGGGCAGCTCTTTTTTTTATGGCTGATGCAATCCTAAAAAATTGCGCGGTCACTCACTTTTTTCGTGTTTTTTTGTGTCCTCACACAAATCTCAAAGTCAGCATTTTTCACCTTTTCTGGTCACAAATCCCCCCACTTTTGCTCAGTGTTTTATCATCATTTTTCATCTGTCTCAAGCCCGAATTGTCAGCAATTCTAGCTCATTGAGCTCATTTTCTTCCTCTTTCGCTTCTAAATTCAATTTTATGCTTCCCAAAATTTTATAAATGTCCAGGTAAAAATGACCGCTGAAAATGAGCCGCTGAAATCTAGAGAGCCAGAAGAGCTGGTWAAAAATGGAGACGAAGAAGAAGGAGATGGAAAAGGACTTGCTAAGTCATTGACACTTTTTAATGGGGTCTCAATTATTGTTGGATGTATTATTGGCTCTGGAATTTTTGTATCGCCTACTGGAGTTCAAGAACGTAAGATTATGGAAATTTTAAAAAGTTGAATTTTCAAAGCTGCTAGATTTTCTCTTGTAACCTTTAAAAATGATAATGTGCAGGTCAAATTGTAATTCACGCAATATTTTGGAGGTTGCAGGTGGTAATAACACTAGACTTTTCAAAACTTGTCAAACCAAATTGAAAGTGATTTTTTGATTTTTTTAATTTTTTATCAAAAATTGCTCTCTCGAAGTTTTAAGTGTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGCTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTGTTTTATCATCATTTTTCA</pcr_primer_p1>
		<pcr_primer_p2>TAAAAAGTGTCAATGACTTAGCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAGTGTTTTATCATCATTTTTCATCTGTCTCAAGCCCGAATTGTCAGCAATTCTAGCTCATTGAGCTCATTTTCTTCCTCTTTCGCTTCTAAATTCAATTTTATGCTTCCCAAAATTTTATAAATGTCCAGGTAAAAATGACCGCTGAAAATGAGCCGCTGAAATCTAGAGAGCCAGAAGAGCTGGTAAAAAATGGAGACGAAGAAGAAGGAGATGGAAAAGGACTTGCTAAGTCATTGACACTTTTTA</canonical_amplicon>
		<polymorphic_amplicon>CAGTGTTTTATCATCATTTTTCATCTGTCTCAAGCCCGAATTGTCAGCAATTCTAGCTCATTGAGCTCATTTTCTTCCTCTTTCGCTTCTAAATTCAATTTTATGCTTCCCAAAATTTTATAAATGTCCAGGTAAAAATGACCGCTGAAAATGAGCCGCTGAAATCTAGAGAGCCAGAAGAGCTGGTWAAAAATGGAGACGAAGAAGAAGGAGATGGAAAAGGACTTGCTAAGTCATTGACACTTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6735</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>256468</contig_pos>
        <strand>+</strand>
        <context>AAGGAGATGG[A/G]AAAGGACTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAGAGCCAGAAGAGCTGGTAAAAAATGGAGACGAAGAAGAAGGAGATGG</left_flank>
        <right_flank>AAAGGACTTGCTAAGTCATTGACACTTTTTAATGGGGTCTCAATTATTGT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTCTCTCCGATTTGACCGGAAATATTGTTATTCTTGTCGCTGCCCGTCTTCTACCTAAAAATATTTTCTTATCTCAATCACTTTATCATCATTTCATGTTCTTTTTTCTACTGAATGCGTTTCGATGCTAAGAAAATGGGCAGCTCTTTTTTTTATGGCTGATGCAATCCTAAAAAATTGCGCGGTCACTCACTTTTTTCGTGTTTTTTTGTGTCCTCACACAAATCTCAAAGTCAGCATTTTTCACCTTTTCTGGTCACAAATCCCCCCACTTTTGCTCAGTGTTTTATCATCATTTTTCATCTGTCTCAAGCCCGAATTGTCAGCAATTCTAGCTCATTGAGCTCATTTTCTTCCTCTTTCGCTTCTAAATTCAATTTTATGCTTCCCAAAATTTTATAAATGTCCAGGTAAAAATGACCGCTGAAAATGAGCCGCTGAAATCTAGAGAGCCAGAAGAGCTGGTAAAAAATGGAGACGAAGAAGAAGGAGATGGAAAAGGACTTGCTAAGTCATTGACACTTTTTAATGGGGTCTCAATTATTGTTGGATGTATTATTGGCTCTGGAATTTTTGTATCGCCTACTGGAGTTCAAGAACGTAAGATTATGGAAATTTTAAAAAGTTGAATTTTCAAAGCTGCTAGATTTTCTCTTGTAACCTTTAAAAATGATAATGTGCAGGTCAAATTGTAATTCACGCAATATTTTGGAGGTTGCAGGTGGTAATAACACTAGACTTTTCAAAACTTGTCAAACCAAATTGAAAGTGATTTTTTGATTTTTTTAATTTTTTATCAAAAATTGCTCTCTCGAAGTTTTAAGTGTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGCTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGAC</canonical>
            <polymorphic>AATTTCTCTCCGATTTGACCGGAAATATTGTTATTCTTGTCGCTGCCCGTCTTCTACCTAAAAATATTTTCTTATCTCAATCACTTTATCATCATTTCATGTTCTTTTTTCTACTGAATGCGTTTCGATGCTAAGAAAATGGGCAGCTCTTTTTTTTATGGCTGATGCAATCCTAAAAAATTGCGCGGTCACTCACTTTTTTCGTGTTTTTTTGTGTCCTCACACAAATCTCAAAGTCAGCATTTTTCACCTTTTCTGGTCACAAATCCCCCCACTTTTGCTCAGTGTTTTATCATCATTTTTCATCTGTCTCAAGCCCGAATTGTCAGCAATTCTAGCTCATTGAGCTCATTTTCTTCCTCTTTCGCTTCTAAATTCAATTTTATGCTTCCCAAAATTTTATAAATGTCCAGGTAAAAATGACCGCTGAAAATGAGCCGCTGAAATCTAGAGAGCCAGAAGAGCTGGTAAAAAATGGAGACGAAGAAGAAGGAGATGGRAAAGGACTTGCTAAGTCATTGACACTTTTTAATGGGGTCTCAATTATTGTTGGATGTATTATTGGCTCTGGAATTTTTGTATCGCCTACTGGAGTTCAAGAACGTAAGATTATGGAAATTTTAAAAAGTTGAATTTTCAAAGCTGCTAGATTTTCTCTTGTAACCTTTAAAAATGATAATGTGCAGGTCAAATTGTAATTCACGCAATATTTTGGAGGTTGCAGGTGGTAATAACACTAGACTTTTCAAAACTTGTCAAACCAAATTGAAAGTGATTTTTTGATTTTTTTAATTTTTTATCAAAAATTGCTCTCTCGAAGTTTTAAGTGTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGCTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTCTTTCGCTTCTAAATTC</pcr_primer_p1>
		<pcr_primer_p2>CTTACGTTCTTGAACTCCAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCCTCTTTCGCTTCTAAATTCAATTTTATGCTTCCCAAAATTTTATAAATGTCCAGGTAAAAATGACCGCTGAAAATGAGCCGCTGAAATCTAGAGAGCCAGAAGAGCTGGTAAAAAATGGAGACGAAGAAGAAGGAGATGGAAAAGGACTTGCTAAGTCATTGACACTTTTTAATGGGGTCTCAATTATTGTTGGATGTATTATTGGCTCTGGAATTTTTGTATCGCCTACTGGAGTTCAAGAACGTAAG</canonical_amplicon>
		<polymorphic_amplicon>TCCTCTTTCGCTTCTAAATTCAATTTTATGCTTCCCAAAATTTTATAAATGTCCAGGTAAAAATGACCGCTGAAAATGAGCCGCTGAAATCTAGAGAGCCAGAAGAGCTGGTAAAAAATGGAGACGAAGAAGAAGGAGATGGRAAAGGACTTGCTAAGTCATTGACACTTTTTAATGGGGTCTCAATTATTGTTGGATGTATTATTGGCTCTGGAATTTTTGTATCGCCTACTGGAGTTCAAGAACGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6736</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>256525</contig_pos>
        <strand>+</strand>
        <context>TTGTTGGATG[C/T]ATTATTGGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTGCTAAGTCATTGACACTTTTTAATGGGGTCTCAATTATTGTTGGATG</left_flank>
        <right_flank>ATTATTGGCTCTGGAATTTTTGTATCGCCTACTGGAGTTCAAGAACGTAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAAAAATATTTTCTTATCTCAATCACTTTATCATCATTTCATGTTCTTTTTTCTACTGAATGCGTTTCGATGCTAAGAAAATGGGCAGCTCTTTTTTTTATGGCTGATGCAATCCTAAAAAATTGCGCGGTCACTCACTTTTTTCGTGTTTTTTTGTGTCCTCACACAAATCTCAAAGTCAGCATTTTTCACCTTTTCTGGTCACAAATCCCCCCACTTTTGCTCAGTGTTTTATCATCATTTTTCATCTGTCTCAAGCCCGAATTGTCAGCAATTCTAGCTCATTGAGCTCATTTTCTTCCTCTTTCGCTTCTAAATTCAATTTTATGCTTCCCAAAATTTTATAAATGTCCAGGTAAAAATGACCGCTGAAAATGAGCCGCTGAAATCTAGAGAGCCAGAAGAGCTGGTAAAAAATGGAGACGAAGAAGAAGGAGATGGAAAAGGACTTGCTAAGTCATTGACACTTTTTAATGGGGTCTCAATTATTGTTGGATGTATTATTGGCTCTGGAATTTTTGTATCGCCTACTGGAGTTCAAGAACGTAAGATTATGGAAATTTTAAAAAGTTGAATTTTCAAAGCTGCTAGATTTTCTCTTGTAACCTTTAAAAATGATAATGTGCAGGTCAAATTGTAATTCACGCAATATTTTGGAGGTTGCAGGTGGTAATAACACTAGACTTTTCAAAACTTGTCAAACCAAATTGAAAGTGATTTTTTGATTTTTTTAATTTTTTATCAAAAATTGCTCTCTCGAAGTTTTAAGTGTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGCTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATAC</canonical>
            <polymorphic>CTAAAAATATTTTCTTATCTCAATCACTTTATCATCATTTCATGTTCTTTTTTCTACTGAATGCGTTTCGATGCTAAGAAAATGGGCAGCTCTTTTTTTTATGGCTGATGCAATCCTAAAAAATTGCGCGGTCACTCACTTTTTTCGTGTTTTTTTGTGTCCTCACACAAATCTCAAAGTCAGCATTTTTCACCTTTTCTGGTCACAAATCCCCCCACTTTTGCTCAGTGTTTTATCATCATTTTTCATCTGTCTCAAGCCCGAATTGTCAGCAATTCTAGCTCATTGAGCTCATTTTCTTCCTCTTTCGCTTCTAAATTCAATTTTATGCTTCCCAAAATTTTATAAATGTCCAGGTAAAAATGACCGCTGAAAATGAGCCGCTGAAATCTAGAGAGCCAGAAGAGCTGGTAAAAAATGGAGACGAAGAAGAAGGAGATGGAAAAGGACTTGCTAAGTCATTGACACTTTTTAATGGGGTCTCAATTATTGTTGGATGYATTATTGGCTCTGGAATTTTTGTATCGCCTACTGGAGTTCAAGAACGTAAGATTATGGAAATTTTAAAAAGTTGAATTTTCAAAGCTGCTAGATTTTCTCTTGTAACCTTTAAAAATGATAATGTGCAGGTCAAATTGTAATTCACGCAATATTTTGGAGGTTGCAGGTGGTAATAACACTAGACTTTTCAAAACTTGTCAAACCAAATTGAAAGTGATTTTTTGATTTTTTTAATTTTTTATCAAAAATTGCTCTCTCGAAGTTTTAAGTGTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGCTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAAATCTAGAGAGCCAGAAG</pcr_primer_p1>
		<pcr_primer_p2>GACCTGCACATTATCATTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTGAAATCTAGAGAGCCAGAAGAGCTGGTAAAAAATGGAGACGAAGAAGAAGGAGATGGAAAAGGACTTGCTAAGTCATTGACACTTTTTAATGGGGTCTCAATTATTGTTGGATGTATTATTGGCTCTGGAATTTTTGTATCGCCTACTGGAGTTCAAGAACGTAAGATTATGGAAATTTTAAAAAGTTGAATTTTCAAAGCTGCTAGATTTTCTCTTGTAACCTTTAAAAATGATAATGTGCAGGTC</canonical_amplicon>
		<polymorphic_amplicon>CTGAAATCTAGAGAGCCAGAAGAGCTGGTAAAAAATGGAGACGAAGAAGAAGGAGATGGAAAAGGACTTGCTAAGTCATTGACACTTTTTAATGGGGTCTCAATTATTGTTGGATGYATTATTGGCTCTGGAATTTTTGTATCGCCTACTGGAGTTCAAGAACGTAAGATTATGGAAATTTTAAAAAGTTGAATTTTCAAAGCTGCTAGATTTTCTCTTGTAACCTTTAAAAATGATAATGTGCAGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6737</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>256583</contig_pos>
        <strand>+</strand>
        <context>TAAGATTATG[A/G]AAATTTTAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTCTGGAATTTTTGTATCGCCTACTGGAGTTCAAGAACGTAAGATTATG</left_flank>
        <right_flank>AAATTTTAAAAAGTTGAATTTTCAAAGCTGCTAGATTTTCTCTTGTAACC</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATGCGTTTCGATGCTAAGAAAATGGGCAGCTCTTTTTTTTATGGCTGATGCAATCCTAAAAAATTGCGCGGTCACTCACTTTTTTCGTGTTTTTTTGTGTCCTCACACAAATCTCAAAGTCAGCATTTTTCACCTTTTCTGGTCACAAATCCCCCCACTTTTGCTCAGTGTTTTATCATCATTTTTCATCTGTCTCAAGCCCGAATTGTCAGCAATTCTAGCTCATTGAGCTCATTTTCTTCCTCTTTCGCTTCTAAATTCAATTTTATGCTTCCCAAAATTTTATAAATGTCCAGGTAAAAATGACCGCTGAAAATGAGCCGCTGAAATCTAGAGAGCCAGAAGAGCTGGTAAAAAATGGAGACGAAGAAGAAGGAGATGGAAAAGGACTTGCTAAGTCATTGACACTTTTTAATGGGGTCTCAATTATTGTTGGATGTATTATTGGCTCTGGAATTTTTGTATCGCCTACTGGAGTTCAAGAACGTAAGATTATGGAAATTTTAAAAAGTTGAATTTTCAAAGCTGCTAGATTTTCTCTTGTAACCTTTAAAAATGATAATGTGCAGGTCAAATTGTAATTCACGCAATATTTTGGAGGTTGCAGGTGGTAATAACACTAGACTTTTCAAAACTTGTCAAACCAAATTGAAAGTGATTTTTTGATTTTTTTAATTTTTTATCAAAAATTGCTCTCTCGAAGTTTTAAGTGTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGCTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAATTCTCCTGTCCCCCCACCTTTAAAAAATCAAAA</canonical>
            <polymorphic>GAATGCGTTTCGATGCTAAGAAAATGGGCAGCTCTTTTTTTTATGGCTGATGCAATCCTAAAAAATTGCGCGGTCACTCACTTTTTTCGTGTTTTTTTGTGTCCTCACACAAATCTCAAAGTCAGCATTTTTCACCTTTTCTGGTCACAAATCCCCCCACTTTTGCTCAGTGTTTTATCATCATTTTTCATCTGTCTCAAGCCCGAATTGTCAGCAATTCTAGCTCATTGAGCTCATTTTCTTCCTCTTTCGCTTCTAAATTCAATTTTATGCTTCCCAAAATTTTATAAATGTCCAGGTAAAAATGACCGCTGAAAATGAGCCGCTGAAATCTAGAGAGCCAGAAGAGCTGGTAAAAAATGGAGACGAAGAAGAAGGAGATGGAAAAGGACTTGCTAAGTCATTGACACTTTTTAATGGGGTCTCAATTATTGTTGGATGTATTATTGGCTCTGGAATTTTTGTATCGCCTACTGGAGTTCAAGAACGTAAGATTATGRAAATTTTAAAAAGTTGAATTTTCAAAGCTGCTAGATTTTCTCTTGTAACCTTTAAAAATGATAATGTGCAGGTCAAATTGTAATTCACGCAATATTTTGGAGGTTGCAGGTGGTAATAACACTAGACTTTTCAAAACTTGTCAAACCAAATTGAAAGTGATTTTTTGATTTTTTTAATTTTTTATCAAAAATTGCTCTCTCGAAGTTTTAAGTGTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGCTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAATTCTCCTGTCCCCCCACCTTTAAAAAATCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATGGGGTCTCAATTATTGTT</pcr_primer_p1>
		<pcr_primer_p2>AAATCACTTTCAATTTGGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAATGGGGTCTCAATTATTGTTGGATGTATTATTGGCTCTGGAATTTTTGTATCGCCTACTGGAGTTCAAGAACGTAAGATTATGGAAATTTTAAAAAGTTGAATTTTCAAAGCTGCTAGATTTTCTCTTGTAACCTTTAAAAATGATAATGTGCAGGTCAAATTGTAATTCACGCAATATTTTGGAGGTTGCAGGTGGTAATAACACTAGACTTTTCAAAACTTGTCAAACCAAATTGAAAGTGATTT</canonical_amplicon>
		<polymorphic_amplicon>TAATGGGGTCTCAATTATTGTTGGATGTATTATTGGCTCTGGAATTTTTGTATCGCCTACTGGAGTTCAAGAACGTAAGATTATGRAAATTTTAAAAAGTTGAATTTTCAAAGCTGCTAGATTTTCTCTTGTAACCTTTAAAAATGATAATGTGCAGGTCAAATTGTAATTCACGCAATATTTTGGAGGTTGCAGGTGGTAATAACACTAGACTTTTCAAAACTTGTCAAACCAAATTGAAAGTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6738</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>259628</contig_pos>
        <strand>+</strand>
        <context>TCTGGCTCCG[C/T]AAGACCATGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCTACTGGTTAGCCATTGGAACTGCCATTGCTGCTCTCTTCTGGCTCCG</left_flank>
        <right_flank>AAGACCATGCCAGATGCACCAAGACCAATTAAGGTCCCACTTATCTGGCC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTCTCTACACCGCAATCTCTCCAGATGAGATGCTTGAATCACCAGCTGTCGCCGTTCTTTTCGCCAACAAACTCTACGGAAGATTCGCTTTTATCATGCCACTCTGTGTCGCCTGTTCTACCATCGGATCAGCTAATGGAGTCATTTTCACATCTTCCAGACTTTTCTATTCGGGTGCTCGTGAAGGACAAATGCCGATGGTGTTGACGATGATTAATAAGAATACAAGGACCCCGATTCCAGCCGTTATTTTGACTGGAGCACTTTCGATTGCGTACTTGTTGGCTTCGAAGGATGTCTATCAGTTGATTAATTATATTCAGGTAAGGATAATAAGCTCGTCGAAAAATTAATTGATCAGGAAAAAATCTGCAATAATGGTTTTGTTTAAACAGTATAACTTTTTCAAAATATTTGAAAAATACATTCAAACTTCCAATTTCAGATCAGCTACTGGTTAGCCATTGGAACTGCCATTGCTGCTCTCTTCTGGCTCCGCAAGACCATGCCAGATGCACCAAGACCAATTAAGGTCCCACTTATCTGGCCAATTATCTTCATTTTGGGTTGTGCAGCTCTTGTATTCATTCCAATCGTGGCAGCTCCAAGAGATACTGGTAAGTTCTGAGAAATTTCTGGTGAAATGTGGCAAGGCAAAACTACCGTAACCTAACCCAACATTTTCCAGGTATCGGACTCCTCATCATGCTCTCTGCTGTCCCAGTCTATGTAATCTTCATTGGATGGAAAAATAAGCCAAAGTTCTTCAACGATTTTATCAGTGAGTTTTTTTTATCAAATCGAGGTTTATTGCATCTTCAAAATTTCAGATAGTTCCACAATCTTCATTCAAAAACTCTTCATGGTTGTCGACGACGAGAAAGAGGACTAGAATTTTTAAATTTTTTGGTTTCCCGGGTTTCCTATAACAACCATACACACATCCATTGTTCCACAATCAACCAGTATTCCAATTCTGCGATATTTTTTCATTTTCAA</canonical>
            <polymorphic>GCTCTCTACACCGCAATCTCTCCAGATGAGATGCTTGAATCACCAGCTGTCGCCGTTCTTTTCGCCAACAAACTCTACGGAAGATTCGCTTTTATCATGCCACTCTGTGTCGCCTGTTCTACCATCGGATCAGCTAATGGAGTCATTTTCACATCTTCCAGACTTTTCTATTCGGGTGCTCGTGAAGGACAAATGCCGATGGTGTTGACGATGATTAATAAGAATACAAGGACCCCGATTCCAGCCGTTATTTTGACTGGAGCACTTTCGATTGCGTACTTGTTGGCTTCGAAGGATGTCTATCAGTTGATTAATTATATTCAGGTAAGGATAATAAGCTCGTCGAAAAATTAATTGATCAGGAAAAAATCTGCAATAATGGTTTTGTTTAAACAGTATAACTTTTTCAAAATATTTGAAAAATACATTCAAACTTCCAATTTCAGATCAGCTACTGGTTAGCCATTGGAACTGCCATTGCTGCTCTCTTCTGGCTCCGYAAGACCATGCCAGATGCACCAAGACCAATTAAGGTCCCACTTATCTGGCCAATTATCTTCATTTTGGGTTGTGCAGCTCTTGTATTCATTCCAATCGTGGCAGCTCCAAGAGATACTGGTAAGTTCTGAGAAATTTCTGGTGAAATGTGGCAAGGCAAAACTACCGTAACCTAACCCAACATTTTCCAGGTATCGGACTCCTCATCATGCTCTCTGCTGTCCCAGTCTATGTAATCTTCATTGGATGGAAAAATAAGCCAAAGTTCTTCAACGATTTTATCAGTGAGTTTTTTTTATCAAATCGAGGTTTATTGCATCTTCAAAATTTCAGATAGTTCCACAATCTTCATTCAAAAACTCTTCATGGTTGTCGACGACGAGAAAGAGGACTAGAATTTTTAAATTTTTTGGTTTCCCGGGTTTCCTATAACAACCATACACACATCCATTGTTCCACAATCAACCAGTATTCCAATTCTGCGATATTTTTTCATTTTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 486 11</canonical_bands>
                <polymorphic_bands>989 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTCAGATCAGCTACTGGTTA</pcr_primer_p1>
		<pcr_primer_p2>GGAAAATGTTGGGTTAGGTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTTCAGATCAGCTACTGGTTAGCCATTGGAACTGCCATTGCTGCTCTCTTCTGGCTCCGCAAGACCATGCCAGATGCACCAAGACCAATTAAGGTCCCACTTATCTGGCCAATTATCTTCATTTTGGGTTGTGCAGCTCTTGTATTCATTCCAATCGTGGCAGCTCCAAGAGATACTGGTAAGTTCTGAGAAATTTCTGGTGAAATGTGGCAAGGCAAAACTACCGTAACCTAACCCAACATTTTCC</canonical_amplicon>
		<polymorphic_amplicon>AATTTCAGATCAGCTACTGGTTAGCCATTGGAACTGCCATTGCTGCTCTCTTCTGGCTCCGYAAGACCATGCCAGATGCACCAAGACCAATTAAGGTCCCACTTATCTGGCCAATTATCTTCATTTTGGGTTGTGCAGCTCTTGTATTCATTCCAATCGTGGCAGCTCCAAGAGATACTGGTAAGTTCTGAGAAATTTCTGGTGAAATGTGGCAAGGCAAAACTACCGTAACCTAACCCAACATTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6739</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>259609</contig_pos>
        <strand>+</strand>
        <context>ACTGCCATTG[C/T]TGCTCTCTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACTTCCAATTTCAGATCAGCTACTGGTTAGCCATTGGAACTGCCATTG</left_flank>
        <right_flank>TGCTCTCTTCTGGCTCCGCAAGACCATGCCAGATGCACCAAGACCAATTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTACGTGCTCACCAATGTGGCTCTCTACACCGCAATCTCTCCAGATGAGATGCTTGAATCACCAGCTGTCGCCGTTCTTTTCGCCAACAAACTCTACGGAAGATTCGCTTTTATCATGCCACTCTGTGTCGCCTGTTCTACCATCGGATCAGCTAATGGAGTCATTTTCACATCTTCCAGACTTTTCTATTCGGGTGCTCGTGAAGGACAAATGCCGATGGTGTTGACGATGATTAATAAGAATACAAGGACCCCGATTCCAGCCGTTATTTTGACTGGAGCACTTTCGATTGCGTACTTGTTGGCTTCGAAGGATGTCTATCAGTTGATTAATTATATTCAGGTAAGGATAATAAGCTCGTCGAAAAATTAATTGATCAGGAAAAAATCTGCAATAATGGTTTTGTTTAAACAGTATAACTTTTTCAAAATATTTGAAAAATACATTCAAACTTCCAATTTCAGATCAGCTACTGGTTAGCCATTGGAACTGCCATTGCTGCTCTCTTCTGGCTCCGCAAGACCATGCCAGATGCACCAAGACCAATTAAGGTCCCACTTATCTGGCCAATTATCTTCATTTTGGGTTGTGCAGCTCTTGTATTCATTCCAATCGTGGCAGCTCCAAGAGATACTGGTAAGTTCTGAGAAATTTCTGGTGAAATGTGGCAAGGCAAAACTACCGTAACCTAACCCAACATTTTCCAGGTATCGGACTCCTCATCATGCTCTCTGCTGTCCCAGTCTATGTAATCTTCATTGGATGGAAAAATAAGCCAAAGTTCTTCAACGATTTTATCAGTGAGTTTTTTTTATCAAATCGAGGTTTATTGCATCTTCAAAATTTCAGATAGTTCCACAATCTTCATTCAAAAACTCTTCATGGTTGTCGACGACGAGAAAGAGGACTAGAATTTTTAAATTTTTTGGTTTCCCGGGTTTCCTATAACAACCATACACACATCCATTGTTCCACAATCAACCAGTATTCCAATTCTGC</canonical>
            <polymorphic>CTACGTGCTCACCAATGTGGCTCTCTACACCGCAATCTCTCCAGATGAGATGCTTGAATCACCAGCTGTCGCCGTTCTTTTCGCCAACAAACTCTACGGAAGATTCGCTTTTATCATGCCACTCTGTGTCGCCTGTTCTACCATCGGATCAGCTAATGGAGTCATTTTCACATCTTCCAGACTTTTCTATTCGGGTGCTCGTGAAGGACAAATGCCGATGGTGTTGACGATGATTAATAAGAATACAAGGACCCCGATTCCAGCCGTTATTTTGACTGGAGCACTTTCGATTGCGTACTTGTTGGCTTCGAAGGATGTCTATCAGTTGATTAATTATATTCAGGTAAGGATAATAAGCTCGTCGAAAAATTAATTGATCAGGAAAAAATCTGCAATAATGGTTTTGTTTAAACAGTATAACTTTTTCAAAATATTTGAAAAATACATTCAAACTTCCAATTTCAGATCAGCTACTGGTTAGCCATTGGAACTGCCATTGYTGCTCTCTTCTGGCTCCGCAAGACCATGCCAGATGCACCAAGACCAATTAAGGTCCCACTTATCTGGCCAATTATCTTCATTTTGGGTTGTGCAGCTCTTGTATTCATTCCAATCGTGGCAGCTCCAAGAGATACTGGTAAGTTCTGAGAAATTTCTGGTGAAATGTGGCAAGGCAAAACTACCGTAACCTAACCCAACATTTTCCAGGTATCGGACTCCTCATCATGCTCTCTGCTGTCCCAGTCTATGTAATCTTCATTGGATGGAAAAATAAGCCAAAGTTCTTCAACGATTTTATCAGTGAGTTTTTTTTATCAAATCGAGGTTTATTGCATCTTCAAAATTTCAGATAGTTCCACAATCTTCATTCAAAAACTCTTCATGGTTGTCGACGACGAGAAAGAGGACTAGAATTTTTAAATTTTTTGGTTTCCCGGGTTTCCTATAACAACCATACACACATCCATTGTTCCACAATCAACCAGTATTCCAATTCTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>502 378 93 27</canonical_bands>
                <polymorphic_bands>595 378 27</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>499 381 93 27</canonical_bands>
                <polymorphic_bands>592 381 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAACTTCCAATTTCAGATCA</pcr_primer_p1>
		<pcr_primer_p2>TTGGGTTAGGTTACGGTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAACTTCCAATTTCAGATCAGCTACTGGTTAGCCATTGGAACTGCCATTGCTGCTCTCTTCTGGCTCCGCAAGACCATGCCAGATGCACCAAGACCAATTAAGGTCCCACTTATCTGGCCAATTATCTTCATTTTGGGTTGTGCAGCTCTTGTATTCATTCCAATCGTGGCAGCTCCAAGAGATACTGGTAAGTTCTGAGAAATTTCTGGTGAAATGTGGCAAGGCAAAACTACCGTAACCTAACCCAA</canonical_amplicon>
		<polymorphic_amplicon>CAAACTTCCAATTTCAGATCAGCTACTGGTTAGCCATTGGAACTGCCATTGYTGCTCTCTTCTGGCTCCGCAAGACCATGCCAGATGCACCAAGACCAATTAAGGTCCCACTTATCTGGCCAATTATCTTCATTTTGGGTTGTGCAGCTCTTGTATTCATTCCAATCGTGGCAGCTCCAAGAGATACTGGTAAGTTCTGAGAAATTTCTGGTGAAATGTGGCAAGGCAAAACTACCGTAACCTAACCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6740</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>259518</contig_pos>
        <strand>+</strand>
        <context>TGGTTTTGTT[G/T]AAACAGTATA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGTCGAAAAATTAATTGATCAGGAAAAAATCTGCAATAATGGTTTTGTT</left_flank>
        <right_flank>AAACAGTATAACTTTTTCAAAATATTTGAAAAATACATTCAAACTTCCAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCCCCAACATACCAAATCTTTGAAACCGAAAATTTTCCAGAAATCTCCCTCTTGCCATTGCAATCTCCATCACCACATGTACCGTAATCTACGTGCTCACCAATGTGGCTCTCTACACCGCAATCTCTCCAGATGAGATGCTTGAATCACCAGCTGTCGCCGTTCTTTTCGCCAACAAACTCTACGGAAGATTCGCTTTTATCATGCCACTCTGTGTCGCCTGTTCTACCATCGGATCAGCTAATGGAGTCATTTTCACATCTTCCAGACTTTTCTATTCGGGTGCTCGTGAAGGACAAATGCCGATGGTGTTGACGATGATTAATAAGAATACAAGGACCCCGATTCCAGCCGTTATTTTGACTGGAGCACTTTCGATTGCGTACTTGTTGGCTTCGAAGGATGTCTATCAGTTGATTAATTATATTCAGGTAAGGATAATAAGCTCGTCGAAAAATTAATTGATCAGGAAAAAATCTGCAATAATGGTTTTGTTTAAACAGTATAACTTTTTCAAAATATTTGAAAAATACATTCAAACTTCCAATTTCAGATCAGCTACTGGTTAGCCATTGGAACTGCCATTGCTGCTCTCTTCTGGCTCCGCAAGACCATGCCAGATGCACCAAGACCAATTAAGGTCCCACTTATCTGGCCAATTATCTTCATTTTGGGTTGTGCAGCTCTTGTATTCATTCCAATCGTGGCAGCTCCAAGAGATACTGGTAAGTTCTGAGAAATTTCTGGTGAAATGTGGCAAGGCAAAACTACCGTAACCTAACCCAACATTTTCCAGGTATCGGACTCCTCATCATGCTCTCTGCTGTCCCAGTCTATGTAATCTTCATTGGATGGAAAAATAAGCCAAAGTTCTTCAACGATTTTATCAGTGAGTTTTTTTTATCAAATCGAGGTTTATTGCATCTTCAAAATTTCAGATAGTTCCACAATCTTCATTCAAAAACTCTTCATGGTTGTCGACGACGAGAAAGAGGAC</canonical>
            <polymorphic>TTTTCCCCAACATACCAAATCTTTGAAACCGAAAATTTTCCAGAAATCTCCCTCTTGCCATTGCAATCTCCATCACCACATGTACCGTAATCTACGTGCTCACCAATGTGGCTCTCTACACCGCAATCTCTCCAGATGAGATGCTTGAATCACCAGCTGTCGCCGTTCTTTTCGCCAACAAACTCTACGGAAGATTCGCTTTTATCATGCCACTCTGTGTCGCCTGTTCTACCATCGGATCAGCTAATGGAGTCATTTTCACATCTTCCAGACTTTTCTATTCGGGTGCTCGTGAAGGACAAATGCCGATGGTGTTGACGATGATTAATAAGAATACAAGGACCCCGATTCCAGCCGTTATTTTGACTGGAGCACTTTCGATTGCGTACTTGTTGGCTTCGAAGGATGTCTATCAGTTGATTAATTATATTCAGGTAAGGATAATAAGCTCGTCGAAAAATTAATTGATCAGGAAAAAATCTGCAATAATGGTTTTGTTKAAACAGTATAACTTTTTCAAAATATTTGAAAAATACATTCAAACTTCCAATTTCAGATCAGCTACTGGTTAGCCATTGGAACTGCCATTGCTGCTCTCTTCTGGCTCCGCAAGACCATGCCAGATGCACCAAGACCAATTAAGGTCCCACTTATCTGGCCAATTATCTTCATTTTGGGTTGTGCAGCTCTTGTATTCATTCCAATCGTGGCAGCTCCAAGAGATACTGGTAAGTTCTGAGAAATTTCTGGTGAAATGTGGCAAGGCAAAACTACCGTAACCTAACCCAACATTTTCCAGGTATCGGACTCCTCATCATGCTCTCTGCTGTCCCAGTCTATGTAATCTTCATTGGATGGAAAAATAAGCCAAAGTTCTTCAACGATTTTATCAGTGAGTTTTTTTTATCAAATCGAGGTTTATTGCATCTTCAAAATTTCAGATAGTTCCACAATCTTCATTCAAAAACTCTTCATGGTTGTCGACGACGAGAAAGAGGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>361 325 140 96 40 38</canonical_bands>
                <polymorphic_bands>361 325 178 96 40</polymorphic_bands>
            </assay>
            <assay>
                <site>GTTTAAAC</site>
                <isoschizomers>
                    <enzyme>MssI</enzyme>
                    <enzyme>PmeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGTTGACGATGATTAATAAGA</pcr_primer_p1>
		<pcr_primer_p2>TGAAATTGGAAGTTTGAATGTAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GGTGTTGACGATGATTAATAAGAATACAAGGACCCCGATTCCAGCCGTTATTTTGACTGGAGCACTTTCGATTGCGTACTTGTTGGCTTCGAAGGATGTCTATCAGTTGATTAATTATATTCAGGTAAGGATAATAAGCTCGTCGAAAAATTAATTGATCAGGAAAAAATCTGCAATAATGGTTTTGTTTAAACAGTATAACTTTTTCAAAATATTTGAAAAATACATTCAAACTTCCAATTTCA</canonical_amplicon>
		<polymorphic_amplicon>GGTGTTGACGATGATTAATAAGAATACAAGGACCCCGATTCCAGCCGTTATTTTGACTGGAGCACTTTCGATTGCGTACTTGTTGGCTTCGAAGGATGTCTATCAGTTGATTAATTATATTCAGGTAAGGATAATAAGCTCGTCGAAAAATTAATTGATCAGGAAAAAATCTGCAATAATGGTTTTGTTKAAACAGTATAACTTTTTCAAAATATTTGAAAAATACATTCAAACTTCCAATTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6741</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>57051</contig_pos>
        <strand>+</strand>
        <context>TTTCTTCTTT[C/T]TGTGCATTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTCCACCTCCTTCGTCTTCTACCCCTGTCGTTTTATACTTTTCTTCTTT</left_flank>
        <right_flank>TGTGCATTCATGAACAGATAATCCAATTTGAGGCTGAGGCCTTTGCCGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACATCCTTGAATCACCACCAAGATGAAATAATTCGAAAAGGATTTTCCCCCATTTTCTATCCTTTCTCATCGTTAATCTAATCTTTAAAATCCGAAAACTCTCCTTCGTTCAATCCCCCTCTCACTTCCTAACATACAACGACTTGCTAATCCAGAAAAAGAGGCGTGGTCTAGAGAGCATCGTGTATGTATATGCAGGTGTTTAAGTGAGTCAGAAGTCAACCTACTAAACGTGGACTTTTCACTCTTCCTGTGTTTCCACTCTATTTTTCTTTCTCTCTCTCTCACTTCTTCGTTTTTTTCCGTGACTGCCCTAGATCGGAGGAGAGAGGATGCTCCGCCCACTCGACTCATTCGCATCCTGGACGTGACCGAAAGGGCACAGAATAGGCGGAGCTGCTTGACTGAAGGGTGGTCCCGTCGTCGCCGTCGACTTCAAACGTCTGTGCTCCACCTCCTTCGTCTTCTACCCCTGTCGTTTTATACTTTTCTTCTTTCTGTGCATTCATGAACAGATAATCCAATTTGAGGCTGAGGCCTTTGCCGCGTGTATCTGCTTGTATGTCTGTGTGTATGTGTATGTGGAAGCCCGCCAACGAAGCAAGAACAAAACATGGCAATCTTGAGCATATTGGATAAGCTGCCCGCTGAGTTGCTAATTGTCAACGTTTGGCACAAACGGACCGAGCCATCTTGGGAAGGAAAAAGGGAAAGACTGGTTGCGAAAGAAAAGAAGGGTAGAGCATTTTTGTGTTTTGCGGACGTTGCTCCTCACCCCTTCTTTCTCCTTCCTTGCGTTTGCGCATCAGTCGTCCGCAAGTCCTAAACCCCTCCCTTCTACTCCCATCTACACACATCCATTTATTTATTAGAAGAGCTCTGAGTAAAACATGAACTATTCGCTATCCATGTCCTTGTTTTATTCATTGCTTATATCGCATTCGGCTGGTTTTTCCTCCTGTCGCGCATGCCTTGTTTTCTTCATCTTTTTCTTTTTT</canonical>
            <polymorphic>TAACATCCTTGAATCACCACCAAGATGAAATAATTCGAAAAGGATTTTCCCCCATTTTCTATCCTTTCTCATCGTTAATCTAATCTTTAAAATCCGAAAACTCTCCTTCGTTCAATCCCCCTCTCACTTCCTAACATACAACGACTTGCTAATCCAGAAAAAGAGGCGTGGTCTAGAGAGCATCGTGTATGTATATGCAGGTGTTTAAGTGAGTCAGAAGTCAACCTACTAAACGTGGACTTTTCACTCTTCCTGTGTTTCCACTCTATTTTTCTTTCTCTCTCTCTCACTTCTTCGTTTTTTTCCGTGACTGCCCTAGATCGGAGGAGAGAGGATGCTCCGCCCACTCGACTCATTCGCATCCTGGACGTGACCGAAAGGGCACAGAATAGGCGGAGCTGCTTGACTGAAGGGTGGTCCCGTCGTCGCCGTCGACTTCAAACGTCTGTGCTCCACCTCCTTCGTCTTCTACCCCTGTCGTTTTATACTTTTCTTCTTTYTGTGCATTCATGAACAGATAATCCAATTTGAGGCTGAGGCCTTTGCCGCGTGTATCTGCTTGTATGTCTGTGTGTATGTGTATGTGGAAGCCCGCCAACGAAGCAAGAACAAAACATGGCAATCTTGAGCATATTGGATAAGCTGCCCGCTGAGTTGCTAATTGTCAACGTTTGGCACAAACGGACCGAGCCATCTTGGGAAGGAAAAAGGGAAAGACTGGTTGCGAAAGAAAAGAAGGGTAGAGCATTTTTGTGTTTTGCGGACGTTGCTCCTCACCCCTTCTTTCTCCTTCCTTGCGTTTGCGCATCAGTCGTCCGCAAGTCCTAAACCCCTCCCTTCTACTCCCATCTACACACATCCATTTATTTATTAGAAGAGCTCTGAGTAAAACATGAACTATTCGCTATCCATGTCCTTGTTTTATTCATTGCTTATATCGCATTCGGCTGGTTTTTCCTCCTGTCGCGCATGCCTTGTTTTCTTCATCTTTTTCTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGATCGGAGGAGAGAGGAT</pcr_primer_p1>
		<pcr_primer_p2>CACAGACATACAAGCAGATACAC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TAGATCGGAGGAGAGAGGATGCTCCGCCCACTCGACTCATTCGCATCCTGGACGTGACCGAAAGGGCACAGAATAGGCGGAGCTGCTTGACTGAAGGGTGGTCCCGTCGTCGCCGTCGACTTCAAACGTCTGTGCTCCACCTCCTTCGTCTTCTACCCCTGTCGTTTTATACTTTTCTTCTTTCTGTGCATTCATGAACAGATAATCCAATTTGAGGCTGAGGCCTTTGCCGCGTGTATCTGCTTGTATGTCTGTG</canonical_amplicon>
		<polymorphic_amplicon>TAGATCGGAGGAGAGAGGATGCTCCGCCCACTCGACTCATTCGCATCCTGGACGTGACCGAAAGGGCACAGAATAGGCGGAGCTGCTTGACTGAAGGGTGGTCCCGTCGTCGCCGTCGACTTCAAACGTCTGTGCTCCACCTCCTTCGTCTTCTACCCCTGTCGTTTTATACTTTTCTTCTTTYTGTGCATTCATGAACAGATAATCCAATTTGAGGCTGAGGCCTTTGCCGCGTGTATCTGCTTGTATGTCTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6742</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>66591</contig_pos>
        <strand></strand>
        <context>ACGAATTGGG[G/T]GAGAGAAGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGCAAGATGCGGAGGTAGAGCACAGAGCAAGAATAAGGTACGAATTGGG</left_flank>
        <right_flank>GAGAGAAGATGGAAAGTGCTGGGGAGGTTTTTTAAAAACAGGAAACGTGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTGCAGTCTTTTTTGCTTACAGAGCGGCGACAGAAGAGCTGTCGAGTCTTGAAAAACAGATAACCGAAAGGAAAGAGACATCGAGAAAGCTGGTAGGCACACAAGATGACGCGATCTGTCAAATTTGTCAGAAGACAAAATTCGCCGATGGGATTGGTACGTTGTTCCGTCTTGTTTCCTGAAAGAGCGATGAGAGCGGCCAAGGGTCCCTCTTGGCGGTAAAGATGAGCTTTATCTCCCTTCTTCACTTTCCATTCTTCACTTTCCATCTGAAGCATCTCCCACCAGGACCCCTGACCCTTGGATCTCTCAGGAAGACTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCGAAAAAGGACATCAATTTAGCCCACGATGAGGGGTTTTTCAGGCCACAAGTGCTTTTATTGTCAATTGCGTAGCTGTGCAAGATGCGGAGGTAGAGCACAGAGCAAGAATAAGGTACGAATTGGGGGAGAGAAGATGGAAAGTGCTGGGGAGGTTTTTTAAAAACAGGAAACGTGGAAAGAAAGAGAATAGGAGCCGTAGTGCCGGGTGACTGAGTTTGAATAGAGCACTTGAATCTGAATACTCTAATCTGGAATAAGAGAATAGGCTGAATCATGACTGATATCTTGAAAGAGAATAAATCAATACGGTATCAGTGGCAGAACTGTTTCAATGAACTCTTTTAATCCAGTCGATGTGATATTACATTTTTATCTTTGACATTTGTTCAAATCAAGAAAACAAAGCAAAAGAAAGGGTTCGAGAACAATAGGTTGAATTGTTACTGGATTAGTTGAATAGAAGAAATTAGCTACGTGGGCCGCCAATGCACACCGGCGCCCCCGTTAAAAGAAGCGACGGAACTTTTTGAGGAGAAAAGAAAGGGGAAATAGAAGGAAGAAGAAAAAAACGAGGAAAAGCTTTCAGGCAATTTGGGCTTGTTCGTTGTGCCAGAAACGTCAACAA</canonical>
            <polymorphic>CTTTTGCAGTCTTTTTTGCTTACAGAGCGGCGACAGAAGAGCTGTCGAGTCTTGAAAAACAGATAACCGAAAGGAAAGAGACATCGAGAAAGCTGGTAGGCACACAAGATGACGCGATCTGTCAAATTTGTCAGAAGACAAAATTCGCCGATGGGATTGGTACGTTGTTCCGTCTTGTTTCCTGAAAGAGCGATGAGAGCGGCCAAGGGTCCCTCTTGGCGGTAAAGATGAGCTTTATCTCCCTTCTTCACTTTCCATTCTTCACTTTCCATCTGAAGCATCTCCCACCAGGACCCCTGACCCTTGGATCTCTCAGGAAGACTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCGAAAAAGGACATCAATTTAGCCCACGATGAGGGGTTTTTCAGGCCACAAGTGCTTTTATTGTCAATTGCGTAGCTGTGCAAGATGCGGAGGTAGAGCACAGAGCAAGAATAAGGTACGAATTGGGKGAGAGAAGATGGAAAGTGCTGGGGAGGTTTTTTAAAAACAGGAAACGTGGAAAGAAAGAGAATAGGAGCCGTAGTGCCGGGTGACTGAGTTTGAATAGAGCACTTGAATCTGAATACTCTAATCTGGAATAAGAGAATAGGCTGAATCATGACTGATATCTTGAAAGAGAATAAATCAATACGGTATCAGTGGCAGAACTGTTTCAATGAACTCTTTTAATCCAGTCGATGTGATATTACATTTTTATCTTTGACATTTGTTCAAATCAAGAAAACAAAGCAAAAGAAAGGGTTCGAGAACAATAGGTTGAATTGTTACTGGATTAGTTGAATAGAAGAAATTAGCTACGTGGGCCGCCAATGCACACCGGCGCCCCCGTTAAAAGAAGCGACGGAACTTTTTGAGGAGAAAAGAAAGGGGAAATAGAAGGAAGAAGAAAAAAACGAGGAAAAGCTTTCAGGCAATTTGGGCTTGTTCGTTGTGCCAGAAACGTCAACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTGTCAATTGCGTAGCTGT</pcr_primer_p1>
		<pcr_primer_p2>CCGTATTGATTTATTCTCTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TATTGTCAATTGCGTAGCTGTGCAAGATGCGGAGGTAGAGCACAGAGCAAGAATAAGGTACGAATTGGGGGAGAGAAGATGGAAAGTGCTGGGGAGGTTTTTTAAAAACAGGAAACGTGGAAAGAAAGAGAATAGGAGCCGTAGTGCCGGGTGACTGAGTTTGAATAGAGCACTTGAATCTGAATACTCTAATCTGGAATAAGAGAATAGGCTGAATCATGACTGATATCTTGAAAGAGAATAAATCAATACGG</canonical_amplicon>
		<polymorphic_amplicon>TATTGTCAATTGCGTAGCTGTGCAAGATGCGGAGGTAGAGCACAGAGCAAGAATAAGGTACGAATTGGGKGAGAGAAGATGGAAAGTGCTGGGGAGGTTTTTTAAAAACAGGAAACGTGGAAAGAAAGAGAATAGGAGCCGTAGTGCCGGGTGACTGAGTTTGAATAGAGCACTTGAATCTGAATACTCTAATCTGGAATAAGAGAATAGGCTGAATCATGACTGATATCTTGAAAGAGAATAAATCAATACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6780</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>66428</contig_pos>
        <strand></strand>
        <context>tctctttctc[T/A]ctctctctct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ACCAGGACCCCTGACCCTTGGATCTCTCAGGAAGACTCTCTCTCTTTCTC</left_flank>
        <right_flank>CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCGAAAAAGGACATC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCCAGGTCTTCAGACGACAAAGGGATGAAGAAGCTAAAGAAACCCAAGCGTCGCAGTAAGTTTTTATTCTAAATTGCTCAGAAAAACCAAGATCAACATTTCCAATCTGTTTTTTTTCCTTAAAAAACCCTTCTAAAGAAGCTTTTTTCATTATCTACCACTTTTGCAGTCTTTTTTGCTTACAGAGCGGCGACAGAAGAGCTGTCGAGTCTTGAAAAACAGATAACCGAAAGGAAAGAGACATCGAGAAAGCTGGTAGGCACACAAGATGACGCGATCTGTCAAATTTGTCAGAAGACAAAATTCGCCGATGGGATTGGTACGTTGTTCCGTCTTGTTTCCTGAAAGAGCGATGAGAGCGGCCAAGGGTCCCTCTTGGCGGTAAAGATGAGCTTTATCTCCCTTCTTCACTTTCCATTCTTCACTTTCCATCTGAAGCATCTCCCACCAGGACCCCTGACCCTTGGATCTCTCAGGAAGACTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCGAAAAAGGACATCAATTTAGCCCACGATGAGGGGTTTTTCAGGCCACAAGTGCTTTTATTGTCAATTGCGTAGCTGTGCAAGATGCGGAGGTAGAGCACAGAGCAAGAATAAGGTACGAATTGGGGGAGAGAAGATGGAAAGTGCTGGGGAGGTTTTTTAAAAACAGGAAACGTGGAAAGAAAGAGAATAGGAGCCGTAGTGCCGGGTGACTGAGTTTGAATAGAGCACTTGAATCTGAATACTCTAATCTGGAATAAGAGAATAGGCTGAATCATGACTGATATCTTGAAAGAGAATAAATCAATACGGTATCAGTGGCAGAACTGTTTCAATGAACTCTTTTAATCCAGTCGATGTGATATTACATTTTTATCTTTGACATTTGTTCAAATCAAGAAAACAAAGCAAAAGAAAGGGTTCGAGAACAATAGGTTGAATTGTTACTGGATTAGTTGAATAGAA</canonical>
            <polymorphic>TTTTCCAGGTCTTCAGACGACAAAGGGATGAAGAAGCTAAAGAAACCCAAGCGTCGCAGTAAGTTTTTATTCTAAATTGCTCAGAAAAACCAAGATCAACATTTCCAATCTGTTTTTTTTCCTTAAAAAACCCTTCTAAAGAAGCTTTTTTCATTATCTACCACTTTTGCAGTCTTTTTTGCTTACAGAGCGGCGACAGAAGAGCTGTCGAGTCTTGAAAAACAGATAACCGAAAGGAAAGAGACATCGAGAAAGCTGGTAGGCACACAAGATGACGCGATCTGTCAAATTTGTCAGAAGACAAAATTCGCCGATGGGATTGGTACGTTGTTCCGTCTTGTTTCCTGAAAGAGCGATGAGAGCGGCCAAGGGTCCCTCTTGGCGGTAAAGATGAGCTTTATCTCCCTTCTTCACTTTCCATTCTTCACTTTCCATCTGAAGCATCTCCCACCAGGACCCCTGACCCTTGGATCTCTCAGGAAGACTCTCTCTCTTTCTCWCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCGAAAAAGGACATCAATTTAGCCCACGATGAGGGGTTTTTCAGGCCACAAGTGCTTTTATTGTCAATTGCGTAGCTGTGCAAGATGCGGAGGTAGAGCACAGAGCAAGAATAAGGTACGAATTGGGGGAGAGAAGATGGAAAGTGCTGGGGAGGTTTTTTAAAAACAGGAAACGTGGAAAGAAAGAGAATAGGAGCCGTAGTGCCGGGTGACTGAGTTTGAATAGAGCACTTGAATCTGAATACTCTAATCTGGAATAAGAGAATAGGCTGAATCATGACTGATATCTTGAAAGAGAATAAATCAATACGGTATCAGTGGCAGAACTGTTTCAATGAACTCTTTTAATCCAGTCGATGTGATATTACATTTTTATCTTTGACATTTGTTCAAATCAAGAAAACAAAGCAAAAGAAAGGGTTCGAGAACAATAGGTTGAATTGTTACTGGATTAGTTGAATAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCACTTTCCATTCTTCACTTT</pcr_primer_p1>
		<pcr_primer_p2>AATTCGTACCTTATTCTTGCTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCACTTTCCATTCTTCACTTTCCATCTGAAGCATCTCCCACCAGGACCCCTGACCCTTGGATCTCTCAGGAAGACTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCGAAAAAGGACATCAATTTAGCCCACGATGAGGGGTTTTTCAGGCCACAAGTGCTTTTATTGTCAATTGCGTAGCTGTGCAAGATGCGGAGGTAGAGCACAGAGCAAGAATAAGGTACGAATT</canonical_amplicon>
		<polymorphic_amplicon>TTCACTTTCCATTCTTCACTTTCCATCTGAAGCATCTCCCACCAGGACCCCTGACCCTTGGATCTCTCAGGAAGACTCTCTCTCTTTCTCWCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCGAAAAAGGACATCAATTTAGCCCACGATGAGGGGTTTTTCAGGCCACAAGTGCTTTTATTGTCAATTGCGTAGCTGTGCAAGATGCGGAGGTAGAGCACAGAGCAAGAATAAGGTACGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6796</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>66327</contig_pos>
        <strand></strand>
        <context>AGATGAGCTT[T/C]ATCTCCCTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAGAGCGATGAGAGCGGCCAAGGGTCCCTCTTGGCGGTAAAGATGAGCTT</left_flank>
        <right_flank>ATCTCCCTTCTTCACTTTCCATTCTTCACTTTCCATCTGAAGCATCTCCC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGTACATTCGACAAGAAAATTGAGGCATGATATCATGCGTGGAAATATTATGCGCGTACTCGAGACAAAAATACTCAAATCACAACACTCGTCTGATTTTTTTCCAGGTCTTCAGACGACAAAGGGATGAAGAAGCTAAAGAAACCCAAGCGTCGCAGTAAGTTTTTATTCTAAATTGCTCAGAAAAACCAAGATCAACATTTCCAATCTGTTTTTTTTCCTTAAAAAACCCTTCTAAAGAAGCTTTTTTCATTATCTACCACTTTTGCAGTCTTTTTTGCTTACAGAGCGGCGACAGAAGAGCTGTCGAGTCTTGAAAAACAGATAACCGAAAGGAAAGAGACATCGAGAAAGCTGGTAGGCACACAAGATGACGCGATCTGTCAAATTTGTCAGAAGACAAAATTCGCCGATGGGATTGGTACGTTGTTCCGTCTTGTTTCCTGAAAGAGCGATGAGAGCGGCCAAGGGTCCCTCTTGGCGGTAAAGATGAGCTTTATCTCCCTTCTTCACTTTCCATTCTTCACTTTCCATCTGAAGCATCTCCCACCAGGACCCCTGACCCTTGGATCTCTCAGGAAGACTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCGAAAAAGGACATCAATTTAGCCCACGATGAGGGGTTTTTCAGGCCACAAGTGCTTTTATTGTCAATTGCGTAGCTGTGCAAGATGCGGAGGTAGAGCACAGAGCAAGAATAAGGTACGAATTGGGGGAGAGAAGATGGAAAGTGCTGGGGAGGTTTTTTAAAAACAGGAAACGTGGAAAGAAAGAGAATAGGAGCCGTAGTGCCGGGTGACTGAGTTTGAATAGAGCACTTGAATCTGAATACTCTAATCTGGAATAAGAGAATAGGCTGAATCATGACTGATATCTTGAAAGAGAATAAATCAATACGGTATCAGTGGCAGAACTGTTTCAATGAACTCTTTTAATCCAGTCGATGTGATA</canonical>
            <polymorphic>TGTGTACATTCGACAAGAAAATTGAGGCATGATATCATGCGTGGAAATATTATGCGCGTACTCGAGACAAAAATACTCAAATCACAACACTCGTCTGATTTTTTTCCAGGTCTTCAGACGACAAAGGGATGAAGAAGCTAAAGAAACCCAAGCGTCGCAGTAAGTTTTTATTCTAAATTGCTCAGAAAAACCAAGATCAACATTTCCAATCTGTTTTTTTTCCTTAAAAAACCCTTCTAAAGAAGCTTTTTTCATTATCTACCACTTTTGCAGTCTTTTTTGCTTACAGAGCGGCGACAGAAGAGCTGTCGAGTCTTGAAAAACAGATAACCGAAAGGAAAGAGACATCGAGAAAGCTGGTAGGCACACAAGATGACGCGATCTGTCAAATTTGTCAGAAGACAAAATTCGCCGATGGGATTGGTACGTTGTTCCGTCTTGTTTCCTGAAAGAGCGATGAGAGCGGCCAAGGGTCCCTCTTGGCGGTAAAGATGAGCTTYATCTCCCTTCTTCACTTTCCATTCTTCACTTTCCATCTGAAGCATCTCCCACCAGGACCCCTGACCCTTGGATCTCTCAGGAAGACTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCGAAAAAGGACATCAATTTAGCCCACGATGAGGGGTTTTTCAGGCCACAAGTGCTTTTATTGTCAATTGCGTAGCTGTGCAAGATGCGGAGGTAGAGCACAGAGCAAGAATAAGGTACGAATTGGGGGAGAGAAGATGGAAAGTGCTGGGGAGGTTTTTTAAAAACAGGAAACGTGGAAAGAAAGAGAATAGGAGCCGTAGTGCCGGGTGACTGAGTTTGAATAGAGCACTTGAATCTGAATACTCTAATCTGGAATAAGAGAATAGGCTGAATCATGACTGATATCTTGAAAGAGAATAAATCAATACGGTATCAGTGGCAGAACTGTTTCAATGAACTCTTTTAATCCAGTCGATGTGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACGTTGTTCCGTCTTGTT</pcr_primer_p1>
		<pcr_primer_p2>GGCTAAATTGATGTCCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GTACGTTGTTCCGTCTTGTTTCCTGAAAGAGCGATGAGAGCGGCCAAGGGTCCCTCTTGGCGGTAAAGATGAGCTTTATCTCCCTTCTTCACTTTCCATTCTTCACTTTCCATCTGAAGCATCTCCCACCAGGACCCCTGACCCTTGGATCTCTCAGGAAGACTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCGAAAAAGGACATCAATTTAGCC</canonical_amplicon>
		<polymorphic_amplicon>GTACGTTGTTCCGTCTTGTTTCCTGAAAGAGCGATGAGAGCGGCCAAGGGTCCCTCTTGGCGGTAAAGATGAGCTTYATCTCCCTTCTTCACTTTCCATTCTTCACTTTCCATCTGAAGCATCTCCCACCAGGACCCCTGACCCTTGGATCTCTCAGGAAGACTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCGAAAAAGGACATCAATTTAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6797</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>88713</contig_pos>
        <strand></strand>
        <context>CATGGTAGTC[T/C]AGAGCTTATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTTTCCATAGAAAAAAAAAACGAGGAAAACGAGCAATCTGCATGGTAGTC</left_flank>
        <right_flank>AGAGCTTATTCTTCTATGTATTTTTCCAAAAGCTTTTTTCATTTGTCCGT</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCTCTTTTCGCCACTTTCTTGTGGTCCCCTCCTTTTTTCTTGAGGCCCCGACGAAAAGCGTTTAGTCAGTTTTTTGTTGTGTTGTTGTGCTTTTCTGGATTCGTGGCTGCTATTGGCATATTTCACATTTCTGACATGTGTGTTTTCAAAAGTCTGCGTGTGAGAAAATACTCTTGACACGCCTTATGAGCATATACTTTTTCATCAAAAACCGCACACTCTTGCCTCCGCTTTAATCGACAAGCTATTTTTCATGGTTAGAGCTCCTGCCAAATGTGGGGAGGGCTTTTATTTTTGTTTCGGAGTGAAGGCAAATCTTTTGCTTTTCATTTCTTATTCTCCTCCCTTTTTATTTTTCCTGCTTCGTGTGTGTTTTCTGACTTTGAAGATTCACTTAAAGAGGGGCAGAGCTCCCAAATAATCTTGACTGACAGACAAATCCATTTTGTTTCCATAGAAAAAAAAAACGAGGAAAACGAGCAATCTGCATGGTAGTCTAGAGCTTATTCTTCTATGTATTTTTCCAAAAGCTTTTTTCATTTGTCCGTTTCCCTTTTCTAGACACCCCTTCATTTTTTATTCCGTCCGGTGCTCTGGTTTCTTAAAACGGAACAATGGACAAACCAACTTATTCTTCTTGATCATTCAGAGAAAAAATTTGTGGGAGAGACTTTGGGACGCGGAAATTGAAAATTAGCAGCAGACTAGACTATTTCTGTGTAATGAACAAAAACTTCCTCGTGATAGGAACAAGGAAGAAGGTTTACATTTGATAAGAATTCGATGTCTGGTTTCTAATTAACACTCACATATAAATTTCGATGAAACTAATTATCCGATAATTTTTTCTTGATTTCACAAAACTGATGAACACAACTTCACTTTCTTTTTTATTCATTGTTTCGTATAATCTTTTATGAAAAGGAATGTTTATAGCAATGTTTGATCCGGATCTGCAAACAAAAATATCAATCGCCGAGCACAACATCGGAGGAACT</canonical>
            <polymorphic>AAGCTCTTTTCGCCACTTTCTTGTGGTCCCCTCCTTTTTTCTTGAGGCCCCGACGAAAAGCGTTTAGTCAGTTTTTTGTTGTGTTGTTGTGCTTTTCTGGATTCGTGGCTGCTATTGGCATATTTCACATTTCTGACATGTGTGTTTTCAAAAGTCTGCGTGTGAGAAAATACTCTTGACACGCCTTATGAGCATATACTTTTTCATCAAAAACCGCACACTCTTGCCTCCGCTTTAATCGACAAGCTATTTTTCATGGTTAGAGCTCCTGCCAAATGTGGGGAGGGCTTTTATTTTTGTTTCGGAGTGAAGGCAAATCTTTTGCTTTTCATTTCTTATTCTCCTCCCTTTTTATTTTTCCTGCTTCGTGTGTGTTTTCTGACTTTGAAGATTCACTTAAAGAGGGGCAGAGCTCCCAAATAATCTTGACTGACAGACAAATCCATTTTGTTTCCATAGAAAAAAAAAACGAGGAAAACGAGCAATCTGCATGGTAGTCYAGAGCTTATTCTTCTATGTATTTTTCCAAAAGCTTTTTTCATTTGTCCGTTTCCCTTTTCTAGACACCCCTTCATTTTTTATTCCGTCCGGTGCTCTGGTTTCTTAAAACGGAACAATGGACAAACCAACTTATTCTTCTTGATCATTCAGAGAAAAAATTTGTGGGAGAGACTTTGGGACGCGGAAATTGAAAATTAGCAGCAGACTAGACTATTTCTGTGTAATGAACAAAAACTTCCTCGTGATAGGAACAAGGAAGAAGGTTTACATTTGATAAGAATTCGATGTCTGGTTTCTAATTAACACTCACATATAAATTTCGATGAAACTAATTATCCGATAATTTTTTCTTGATTTCACAAAACTGATGAACACAACTTCACTTTCTTTTTTATTCATTGTTTCGTATAATCTTTTATGAAAAGGAATGTTTATAGCAATGTTTGATCCGGATCTGCAAACAAAAATATCAATCGCCGAGCACAACATCGGAGGAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 293 147 61</canonical_bands>
                <polymorphic_bands>560 293 147</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>498 441 61</canonical_bands>
                <polymorphic_bands>559 441</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTGAAGATTCACTTAAAGAGG</pcr_primer_p1>
		<pcr_primer_p2>ATAAGTTGGTTTGTCCATTGTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTTTGAAGATTCACTTAAAGAGGGGCAGAGCTCCCAAATAATCTTGACTGACAGACAAATCCATTTTGTTTCCATAGAAAAAAAAAACGAGGAAAACGAGCAATCTGCATGGTAGTCTAGAGCTTATTCTTCTATGTATTTTTCCAAAAGCTTTTTTCATTTGTCCGTTTCCCTTTTCTAGACACCCCTTCATTTTTTATTCCGTCCGGTGCTCTGGTTTCTTAAAACGGAACAATGGACAAACCAACTTAT</canonical_amplicon>
		<polymorphic_amplicon>CTTTGAAGATTCACTTAAAGAGGGGCAGAGCTCCCAAATAATCTTGACTGACAGACAAATCCATTTTGTTTCCATAGAAAAAAAAAACGAGGAAAACGAGCAATCTGCATGGTAGTCYAGAGCTTATTCTTCTATGTATTTTTCCAAAAGCTTTTTTCATTTGTCCGTTTCCCTTTTCTAGACACCCCTTCATTTTTTATTCCGTCCGGTGCTCTGGTTTCTTAAAACGGAACAATGGACAAACCAACTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6800</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>129827</contig_pos>
        <strand></strand>
        <context>TGAACATTTT[T/C]AGGTCAGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGCCATCCTTGTCATAAAAAGCCAAATAACTTTCCCATGTTGAACATTTT</left_flank>
        <right_flank>AGGTCAGATTTCCAGTTTCTGGAGTTTGTGGTCTGGATATGGTCGATAAG</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAATTTTTTTGCTCTGTGCACGCCAACAAAAAGTGCTAACTGATGGAATGTTTTTGATATAATGATAAAAAATTTATTAGTTGACAACTTCCCCATATTTTTGACAGATATCGAGATCAATTGGCTTGAAGTTGAAAGTTGAAAGGCCCGAGAAGTACAGGTTTTACAGGTCAATCAGTTTAAATGGAGAACAATTTCAAAAAATTTCAGAAACTTGTTGATTAAGAAAAAAATTGTGAACTTAGCAAAAATAACTGGCTCTTTATGACAAGGGGGGCCTATGAGATCTATGAAAATTTCTATAAAAATTTCGTAATTTGCGCTTGTTTCCACAAAAATTCATCACTTTAAAAAAGTTCACTTGAGACCGGTTTTTTGCATGAAAAACACTATTTTTCCATTGTAACTGTGTGATTTAAATTTTTTCAGCAAAGTCTTTTCTCTCATGGCCATCCTTGTCATAAAAAGCCAAATAACTTTCCCATGTTGAACATTTTTAGGTCAGATTTCCAGTTTCTGGAGTTTGTGGTCTGGATATGGTCGATAAGTTATCAATTTTGAACTCTGATCAGTGATTCTCCAACACTGTACTCTTTTCATATATTACTGAAATGTTGTACATCAAAGTACAAACTTTCTTGAGCAGTAATAGAGAGAAACCATTGCAGTAATTGCTATTTTTCATATTTTCTACGAACTTCCGCCATCCATTATTTCTTCTTGTTCTTTCCATCTTTTTTGTTCTTCACATTCACCTGGAAAACTGAGGTGTGAAACCCCATAAAATATCCTCATTCCATTTCTCGCTAAAAATATATGAAATTCGCTCATTGCAGTGCGTCATTCGATGGTATAATGTAATGCGAATTTCCGGGTTTTCACACTGATTTTCAGTTTTTGATTTCCCACCGCGCGCATTTGTGTGGGGCCAGTCGGTGGAGAGACATGGCGAGAAACCAAAAAGTTTTGTTTTTTTTTTCCAAATCACAGTTTTGCTG</canonical>
            <polymorphic>ACAAATTTTTTTGCTCTGTGCACGCCAACAAAAAGTGCTAACTGATGGAATGTTTTTGATATAATGATAAAAAATTTATTAGTTGACAACTTCCCCATATTTTTGACAGATATCGAGATCAATTGGCTTGAAGTTGAAAGTTGAAAGGCCCGAGAAGTACAGGTTTTACAGGTCAATCAGTTTAAATGGAGAACAATTTCAAAAAATTTCAGAAACTTGTTGATTAAGAAAAAAATTGTGAACTTAGCAAAAATAACTGGCTCTTTATGACAAGGGGGGCCTATGAGATCTATGAAAATTTCTATAAAAATTTCGTAATTTGCGCTTGTTTCCACAAAAATTCATCACTTTAAAAAAGTTCACTTGAGACCGGTTTTTTGCATGAAAAACACTATTTTTCCATTGTAACTGTGTGATTTAAATTTTTTCAGCAAAGTCTTTTCTCTCATGGCCATCCTTGTCATAAAAAGCCAAATAACTTTCCCATGTTGAACATTTTYAGGTCAGATTTCCAGTTTCTGGAGTTTGTGGTCTGGATATGGTCGATAAGTTATCAATTTTGAACTCTGATCAGTGATTCTCCAACACTGTACTCTTTTCATATATTACTGAAATGTTGTACATCAAAGTACAAACTTTCTTGAGCAGTAATAGAGAGAAACCATTGCAGTAATTGCTATTTTTCATATTTTCTACGAACTTCCGCCATCCATTATTTCTTCTTGTTCTTTCCATCTTTTTTGTTCTTCACATTCACCTGGAAAACTGAGGTGTGAAACCCCATAAAATATCCTCATTCCATTTCTCGCTAAAAATATATGAAATTCGCTCATTGCAGTGCGTCATTCGATGGTATAATGTAATGCGAATTTCCGGGTTTTCACACTGATTTTCAGTTTTTGATTTCCCACCGCGCGCATTTGTGTGGGGCCAGTCGGTGGAGAGACATGGCGAGAAACCAAAAAGTTTTGTTTTTTTTTTCCAAATCACAGTTTTGCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAACTGGCTCTTTATGACAAG</pcr_primer_p1>
		<pcr_primer_p2>AATCACTGATCAGAGTTCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>328</pcr_amplicon_size>
		<canonical_amplicon>AATAACTGGCTCTTTATGACAAGGGGGGCCTATGAGATCTATGAAAATTTCTATAAAAATTTCGTAATTTGCGCTTGTTTCCACAAAAATTCATCACTTTAAAAAAGTTCACTTGAGACCGGTTTTTTGCATGAAAAACACTATTTTTCCATTGTAACTGTGTGATTTAAATTTTTTCAGCAAAGTCTTTTCTCTCATGGCCATCCTTGTCATAAAAAGCCAAATAACTTTCCCATGTTGAACATTTTTAGGTCAGATTTCCAGTTTCTGGAGTTTGTGGTCTGGATATGGTCGATAAGTTATCAATTTTGAACTCTGATCAGTGATT</canonical_amplicon>
		<polymorphic_amplicon>AATAACTGGCTCTTTATGACAAGGGGGGCCTATGAGATCTATGAAAATTTCTATAAAAATTTCGTAATTTGCGCTTGTTTCCACAAAAATTCATCACTTTAAAAAAGTTCACTTGAGACCGGTTTTTTGCATGAAAAACACTATTTTTCCATTGTAACTGTGTGATTTAAATTTTTTCAGCAAAGTCTTTTCTCTCATGGCCATCCTTGTCATAAAAAGCCAAATAACTTTCCCATGTTGAACATTTTYAGGTCAGATTTCCAGTTTCTGGAGTTTGTGGTCTGGATATGGTCGATAAGTTATCAATTTTGAACTCTGATCAGTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6801</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>130021</contig_pos>
        <strand></strand>
        <context>TCATATTTTC[T/C]ACGAACTTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGCAGTAATAGAGAGAAACCATTGCAGTAATTGCTATTTTTCATATTTTC</left_flank>
        <right_flank>ACGAACTTCCGCCATCCATTATTTCTTCTTGTTCTTTCCATCTTTTTTGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTCAAAAAATTTCAGAAACTTGTTGATTAAGAAAAAAATTGTGAACTTAGCAAAAATAACTGGCTCTTTATGACAAGGGGGGCCTATGAGATCTATGAAAATTTCTATAAAAATTTCGTAATTTGCGCTTGTTTCCACAAAAATTCATCACTTTAAAAAAGTTCACTTGAGACCGGTTTTTTGCATGAAAAACACTATTTTTCCATTGTAACTGTGTGATTTAAATTTTTTCAGCAAAGTCTTTTCTCTCATGGCCATCCTTGTCATAAAAAGCCAAATAACTTTCCCATGTTGAACATTTTTAGGTCAGATTTCCAGTTTCTGGAGTTTGTGGTCTGGATATGGTCGATAAGTTATCAATTTTGAACTCTGATCAGTGATTCTCCAACACTGTACTCTTTTCATATATTACTGAAATGTTGTACATCAAAGTACAAACTTTCTTGAGCAGTAATAGAGAGAAACCATTGCAGTAATTGCTATTTTTCATATTTTCTACGAACTTCCGCCATCCATTATTTCTTCTTGTTCTTTCCATCTTTTTTGTTCTTCACATTCACCTGGAAAACTGAGGTGTGAAACCCCATAAAATATCCTCATTCCATTTCTCGCTAAAAATATATGAAATTCGCTCATTGCAGTGCGTCATTCGATGGTATAATGTAATGCGAATTTCCGGGTTTTCACACTGATTTTCAGTTTTTGATTTCCCACCGCGCGCATTTGTGTGGGGCCAGTCGGTGGAGAGACATGGCGAGAAACCAAAAAGTTTTGTTTTTTTTTTCCAAATCACAGTTTTGCTGATACAAAAATAACTGTCATGACGAATCTGAATGAGAATGTAAAGAACAAAACTTCGGTTGAGACCTGTACTGATTTGATACCAAAATCGAGAGAACTAATTATAGAGACAGAAAGCAAAATATTGAAAAGGGAAGGATGGGAACGAATTGATGTTTGTGTTCAGAGTTCAATGTTCAAAAAAACCAAATTTGCG</canonical>
            <polymorphic>AATTTCAAAAAATTTCAGAAACTTGTTGATTAAGAAAAAAATTGTGAACTTAGCAAAAATAACTGGCTCTTTATGACAAGGGGGGCCTATGAGATCTATGAAAATTTCTATAAAAATTTCGTAATTTGCGCTTGTTTCCACAAAAATTCATCACTTTAAAAAAGTTCACTTGAGACCGGTTTTTTGCATGAAAAACACTATTTTTCCATTGTAACTGTGTGATTTAAATTTTTTCAGCAAAGTCTTTTCTCTCATGGCCATCCTTGTCATAAAAAGCCAAATAACTTTCCCATGTTGAACATTTTTAGGTCAGATTTCCAGTTTCTGGAGTTTGTGGTCTGGATATGGTCGATAAGTTATCAATTTTGAACTCTGATCAGTGATTCTCCAACACTGTACTCTTTTCATATATTACTGAAATGTTGTACATCAAAGTACAAACTTTCTTGAGCAGTAATAGAGAGAAACCATTGCAGTAATTGCTATTTTTCATATTTTCYACGAACTTCCGCCATCCATTATTTCTTCTTGTTCTTTCCATCTTTTTTGTTCTTCACATTCACCTGGAAAACTGAGGTGTGAAACCCCATAAAATATCCTCATTCCATTTCTCGCTAAAAATATATGAAATTCGCTCATTGCAGTGCGTCATTCGATGGTATAATGTAATGCGAATTTCCGGGTTTTCACACTGATTTTCAGTTTTTGATTTCCCACCGCGCGCATTTGTGTGGGGCCAGTCGGTGGAGAGACATGGCGAGAAACCAAAAAGTTTTGTTTTTTTTTTCCAAATCACAGTTTTGCTGATACAAAAATAACTGTCATGACGAATCTGAATGAGAATGTAAAGAACAAAACTTCGGTTGAGACCTGTACTGATTTGATACCAAAATCGAGAGAACTAATTATAGAGACAGAAAGCAAAATATTGAAAAGGGAAGGATGGGAACGAATTGATGTTTGTGTTCAGAGTTCAATGTTCAAAAAAACCAAATTTGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTACAAACTTTCTTGAGCAGT</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCGCATTACATTATACCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAGTACAAACTTTCTTGAGCAGTAATAGAGAGAAACCATTGCAGTAATTGCTATTTTTCATATTTTCTACGAACTTCCGCCATCCATTATTTCTTCTTGTTCTTTCCATCTTTTTTGTTCTTCACATTCACCTGGAAAACTGAGGTGTGAAACCCCATAAAATATCCTCATTCCATTTCTCGCTAAAAATATATGAAATTCGCTCATTGCAGTGCGTCATTCGATGGTATAATGTAATGCGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>AAGTACAAACTTTCTTGAGCAGTAATAGAGAGAAACCATTGCAGTAATTGCTATTTTTCATATTTTCYACGAACTTCCGCCATCCATTATTTCTTCTTGTTCTTTCCATCTTTTTTGTTCTTCACATTCACCTGGAAAACTGAGGTGTGAAACCCCATAAAATATCCTCATTCCATTTCTCGCTAAAAATATATGAAATTCGCTCATTGCAGTGCGTCATTCGATGGTATAATGTAATGCGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6802</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>133765</contig_pos>
        <strand>+</strand>
        <context>GCTCCCACAT[C/T]CCTATTTTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGATCAGATCGATGATCAGCAAGAGTTTCAGTTTGAAAATGCTCCCACAT</left_flank>
        <right_flank>CCTATTTTGGCAATGCTATGAAAAAAATCCTAGTCCAACCACCCTGTAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGATTTTTATCGTTTTTCTATATTATATTTTCTCAAAACGTCATGGCCTGGCCCACCAACTGTTTTCTATATGAACCATCGTACTCATCAAACTACTCATCTCATTTCATTTTTTCAACCGTCCTCGTTTCGCCTCATCTCATCACCATTCAGTGTGGAAAATGGAGGCGCAAAAGCAGTAATGTGTTTTGCCGAGCCCGGACACAACTGTCAGTGCACATTCGACAGATATCAACTGTCGTCCAGCGCCCATCCTCGCCCACAATCCCCCCCCCCCACACATACTACTATCTATTTACGTGCCATATGTTGTTCGACTCGATGGGTACCGGACCCATTCGATTCTGTACACTGTCGGCATTTCACACGATGCCTGTCGAATGGGATACGAGGATTACACTGTACACAAAACTGACAGCGCGATTTGAGAACTGCGAAACTTCGGTTAGATCAGATCGATGATCAGCAAGAGTTTCAGTTTGAAAATGCTCCCACATTCCTATTTTGGCAATGCTATGAAAAAAATCCTAGTCCAACCACCCTGTAATCATATTGCTTGTGCATTTTGTAACGAGTTTGTGTCAGTCAGTGTATGTGTGGGTGTCTATGTTTGTGTGCCGGTTTTTCTGTGCCGGTCCCTGGCGGCTTCAAGCGCACTTGCCTCGATCCTGAAGAGACGTGAGCAATGGCAGCCCCCCTCTAGAAAAGCTCTCCTATTACAAGATATGGTCTGTGTGGATTAAAACGGACAGACGTCGGTCGTCGTCGTCCTGCGCTCGCTCAACCGCCTGGTAATAGTACTCCCATGGGGTGTTTCAGAAAAGAGAACATGCAATGTATGGAGAAAAAGAAAAAGGAGAAGCCTTCTGTCTGTTTGTATGCCCACATTCAGTGTTTGACTGGCAACCGGGCGAGGACGCCAATGTAGATGACATTGTAGATGAGTTTGTGCGCAACGGCGCCTACCAGAATTCGTCCCCCTTTTCTTCTTTCGTATT</canonical>
            <polymorphic>TTTGATTTTTATCGTTTTTCTATATTATATTTTCTCAAAACGTCATGGCCTGGCCCACCAACTGTTTTCTATATGAACCATCGTACTCATCAAACTACTCATCTCATTTCATTTTTTCAACCGTCCTCGTTTCGCCTCATCTCATCACCATTCAGTGTGGAAAATGGAGGCGCAAAAGCAGTAATGTGTTTTGCCGAGCCCGGACACAACTGTCAGTGCACATTCGACAGATATCAACTGTCGTCCAGCGCCCATCCTCGCCCACAATCCCCCCCCCCCACACATACTACTATCTATTTACGTGCCATATGTTGTTCGACTCGATGGGTACCGGACCCATTCGATTCTGTACACTGTCGGCATTTCACACGATGCCTGTCGAATGGGATACGAGGATTACACTGTACACAAAACTGACAGCGCGATTTGAGAACTGCGAAACTTCGGTTAGATCAGATCGATGATCAGCAAGAGTTTCAGTTTGAAAATGCTCCCACATYCCTATTTTGGCAATGCTATGAAAAAAATCCTAGTCCAACCACCCTGTAATCATATTGCTTGTGCATTTTGTAACGAGTTTGTGTCAGTCAGTGTATGTGTGGGTGTCTATGTTTGTGTGCCGGTTTTTCTGTGCCGGTCCCTGGCGGCTTCAAGCGCACTTGCCTCGATCCTGAAGAGACGTGAGCAATGGCAGCCCCCCTCTAGAAAAGCTCTCCTATTACAAGATATGGTCTGTGTGGATTAAAACGGACAGACGTCGGTCGTCGTCGTCCTGCGCTCGCTCAACCGCCTGGTAATAGTACTCCCATGGGGTGTTTCAGAAAAGAGAACATGCAATGTATGGAGAAAAAGAAAAAGGAGAAGCCTTCTGTCTGTTTGTATGCCCACATTCAGTGTTTGACTGGCAACCGGGCGAGGACGCCAATGTAGATGACATTGTAGATGAGTTTGTGCGCAACGGCGCCTACCAGAATTCGTCCCCCTTTTCTTCTTTCGTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCCATTCGATTCTGTACACT</pcr_primer_p1>
		<pcr_primer_p2>ACTGACACAAACTCGTTACAAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ACCCATTCGATTCTGTACACTGTCGGCATTTCACACGATGCCTGTCGAATGGGATACGAGGATTACACTGTACACAAAACTGACAGCGCGATTTGAGAACTGCGAAACTTCGGTTAGATCAGATCGATGATCAGCAAGAGTTTCAGTTTGAAAATGCTCCCACATTCCTATTTTGGCAATGCTATGAAAAAAATCCTAGTCCAACCACCCTGTAATCATATTGCTTGTGCATTTTGTAACGAGTTTGTGTCAGT</canonical_amplicon>
		<polymorphic_amplicon>ACCCATTCGATTCTGTACACTGTCGGCATTTCACACGATGCCTGTCGAATGGGATACGAGGATTACACTGTACACAAAACTGACAGCGCGATTTGAGAACTGCGAAACTTCGGTTAGATCAGATCGATGATCAGCAAGAGTTTCAGTTTGAAAATGCTCCCACATYCCTATTTTGGCAATGCTATGAAAAAAATCCTAGTCCAACCACCCTGTAATCATATTGCTTGTGCATTTTGTAACGAGTTTGTGTCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6803</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>133960</contig_pos>
        <strand>+</strand>
        <context>GCAATGGCAG[C/G]CCCCCTCTAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGGCTTCAAGCGCACTTGCCTCGATCCTGAAGAGACGTGAGCAATGGCAG</left_flank>
        <right_flank>CCCCCTCTAGAAAAGCTCTCCTATTACAAGATATGGTCTGTGTGGATTAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGCCCGGACACAACTGTCAGTGCACATTCGACAGATATCAACTGTCGTCCAGCGCCCATCCTCGCCCACAATCCCCCCCCCCCACACATACTACTATCTATTTACGTGCCATATGTTGTTCGACTCGATGGGTACCGGACCCATTCGATTCTGTACACTGTCGGCATTTCACACGATGCCTGTCGAATGGGATACGAGGATTACACTGTACACAAAACTGACAGCGCGATTTGAGAACTGCGAAACTTCGGTTAGATCAGATCGATGATCAGCAAGAGTTTCAGTTTGAAAATGCTCCCACATTCCTATTTTGGCAATGCTATGAAAAAAATCCTAGTCCAACCACCCTGTAATCATATTGCTTGTGCATTTTGTAACGAGTTTGTGTCAGTCAGTGTATGTGTGGGTGTCTATGTTTGTGTGCCGGTTTTTCTGTGCCGGTCCCTGGCGGCTTCAAGCGCACTTGCCTCGATCCTGAAGAGACGTGAGCAATGGCAGCCCCCCTCTAGAAAAGCTCTCCTATTACAAGATATGGTCTGTGTGGATTAAAACGGACAGACGTCGGTCGTCGTCGTCCTGCGCTCGCTCAACCGCCTGGTAATAGTACTCCCATGGGGTGTTTCAGAAAAGAGAACATGCAATGTATGGAGAAAAAGAAAAAGGAGAAGCCTTCTGTCTGTTTGTATGCCCACATTCAGTGTTTGACTGGCAACCGGGCGAGGACGCCAATGTAGATGACATTGTAGATGAGTTTGTGCGCAACGGCGCCTACCAGAATTCGTCCCCCTTTTCTTCTTTCGTATTTCGAGTTGGAAGATATTTGTTTGCGCTCTCATATGACCGAAAATGGTATATGCCAATGTGGAATTGCAATTTTGAAACCAGAGCTACCAAATATTACAATACATGAGTGATGGACAACATTGGAAAAGAGTGAGGAGAGAGAAAAGGATAGGGATGAGAACTGAATGATCAAGAAGTAGATGGACAAGTAGAAGC</canonical>
            <polymorphic>GAGCCCGGACACAACTGTCAGTGCACATTCGACAGATATCAACTGTCGTCCAGCGCCCATCCTCGCCCACAATCCCCCCCCCCCACACATACTACTATCTATTTACGTGCCATATGTTGTTCGACTCGATGGGTACCGGACCCATTCGATTCTGTACACTGTCGGCATTTCACACGATGCCTGTCGAATGGGATACGAGGATTACACTGTACACAAAACTGACAGCGCGATTTGAGAACTGCGAAACTTCGGTTAGATCAGATCGATGATCAGCAAGAGTTTCAGTTTGAAAATGCTCCCACATTCCTATTTTGGCAATGCTATGAAAAAAATCCTAGTCCAACCACCCTGTAATCATATTGCTTGTGCATTTTGTAACGAGTTTGTGTCAGTCAGTGTATGTGTGGGTGTCTATGTTTGTGTGCCGGTTTTTCTGTGCCGGTCCCTGGCGGCTTCAAGCGCACTTGCCTCGATCCTGAAGAGACGTGAGCAATGGCAGSCCCCCTCTAGAAAAGCTCTCCTATTACAAGATATGGTCTGTGTGGATTAAAACGGACAGACGTCGGTCGTCGTCGTCCTGCGCTCGCTCAACCGCCTGGTAATAGTACTCCCATGGGGTGTTTCAGAAAAGAGAACATGCAATGTATGGAGAAAAAGAAAAAGGAGAAGCCTTCTGTCTGTTTGTATGCCCACATTCAGTGTTTGACTGGCAACCGGGCGAGGACGCCAATGTAGATGACATTGTAGATGAGTTTGTGCGCAACGGCGCCTACCAGAATTCGTCCCCCTTTTCTTCTTTCGTATTTCGAGTTGGAAGATATTTGTTTGCGCTCTCATATGACCGAAAATGGTATATGCCAATGTGGAATTGCAATTTTGAAACCAGAGCTACCAAATATTACAATACATGAGTGATGGACAACATTGGAAAAGAGTGAGGAGAGAGAAAAGGATAGGGATGAGAACTGAATGATCAAGAAGTAGATGGACAAGTAGAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 458 38</canonical_bands>
                <polymorphic_bands>542 458</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>501 452 47</canonical_bands>
                <polymorphic_bands>548 452</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>449 219 154 112 47 16 3</canonical_bands>
                <polymorphic_bands>449 219 154 112 63 3</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTATGTGTGGGTGTCTATGTT</pcr_primer_p1>
		<pcr_primer_p2>ATACATTGCATGTTCTCTTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGTATGTGTGGGTGTCTATGTTTGTGTGCCGGTTTTTCTGTGCCGGTCCCTGGCGGCTTCAAGCGCACTTGCCTCGATCCTGAAGAGACGTGAGCAATGGCAGCCCCCCTCTAGAAAAGCTCTCCTATTACAAGATATGGTCTGTGTGGATTAAAACGGACAGACGTCGGTCGTCGTCGTCCTGCGCTCGCTCAACCGCCTGGTAATAGTACTCCCATGGGGTGTTTCAGAAAAGAGAACATGCAATGTAT</canonical_amplicon>
		<polymorphic_amplicon>TGTATGTGTGGGTGTCTATGTTTGTGTGCCGGTTTTTCTGTGCCGGTCCCTGGCGGCTTCAAGCGCACTTGCCTCGATCCTGAAGAGACGTGAGCAATGGCAGSCCCCCTCTAGAAAAGCTCTCCTATTACAAGATATGGTCTGTGTGGATTAAAACGGACAGACGTCGGTCGTCGTCGTCCTGCGCTCGCTCAACCGCCTGGTAATAGTACTCCCATGGGGTGTTTCAGAAAAGAGAACATGCAATGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6804</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>201505</contig_pos>
        <strand>+</strand>
        <context>GGAGGATAAA[C/T]CAGAAAAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCAAAAAAAGGAGTATGTAGGTAAGAAGACAAAAAATAGGGAGGATAAA</left_flank>
        <right_flank>CAGAAAAAGAAGAAATGATATCAAAACGGAAAAAGATAAGAAGGGATAGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCTCCTGCTTCTTCTTTTTTTGTTGCATCTCCATTGGCTTTTGTATTTTCTTTATCTTCATTTTCATTTGACATCTGGAAATATTGACACTTCCAAAAAAGAAGAAAGAAAACGAAAATCTAAATTCAGAAGAAAGTACAACCACTCTTCAAAAAACGGGAATGAAGTCTGAAGGGCCTCGTGTGCCTTCAAGACTTTTTAAACAAGAATTTACTATGAAATCATCGCGAGTGACAAAAAAAGGAGGTCTACCACTTGGCTTCATTAGGACGGTTGTGGTCATTACTCGCAACTACAAAAACAGAAAAACGAACGATGATAAAGATGGGTGATGGTGGTAGCTGATGCGGTAAGGGGGAATGGAATGGGAGAATAAAATGGAGGGTGGAGAGTGTTAAAATGACCTGCGGCCCCCAGAAGAGGGTTCTTAAAGAAAACACGTAAAAACCAAAAAAAGGAGTATGTAGGTAAGAAGACAAAAAATAGGGAGGATAAACCAGAAAAAGAAGAAATGATATCAAAACGGAAAAAGATAAGAAGGGATAGATAAAAAATTGAAACTGACACGAAAGATAGATCAAACATGGGTTCAAAATAAGTATAAGAAGTATAGGAGAAGATAATTCAAGCTGAGTTTTTTAAAGAAAAATAGTTAGTGTCACCACTTGTATAGAAACGATTGATGATTATATCATCAACTGATTTTTTCTCATTTTCTTACCAACACCATACCCTCTCTCTCCCCGTTGTCCCCCCAAACGACGCCTTCTTTCTCTAGTTTTGGAAAATGACCGAGAGACTTTTCAAAAAATTCTCTCTCTTTCGATCACTCTCTCGATTTTTTCTCTTACAACCAATAATTGATAACTTGATCAGTCTCCATATATGTCGCAACCAATTTCATGCTACCGCTTATTACTAAAAATTGTGTATGTGTGAGTCAATTTCGTGGTGGCGGGTCTCGTTTCGCTTTTTTTCTCGCCAAACTGTTTTGTAA</canonical>
            <polymorphic>TTTTCTCCTGCTTCTTCTTTTTTTGTTGCATCTCCATTGGCTTTTGTATTTTCTTTATCTTCATTTTCATTTGACATCTGGAAATATTGACACTTCCAAAAAAGAAGAAAGAAAACGAAAATCTAAATTCAGAAGAAAGTACAACCACTCTTCAAAAAACGGGAATGAAGTCTGAAGGGCCTCGTGTGCCTTCAAGACTTTTTAAACAAGAATTTACTATGAAATCATCGCGAGTGACAAAAAAAGGAGGTCTACCACTTGGCTTCATTAGGACGGTTGTGGTCATTACTCGCAACTACAAAAACAGAAAAACGAACGATGATAAAGATGGGTGATGGTGGTAGCTGATGCGGTAAGGGGGAATGGAATGGGAGAATAAAATGGAGGGTGGAGAGTGTTAAAATGACCTGCGGCCCCCAGAAGAGGGTTCTTAAAGAAAACACGTAAAAACCAAAAAAAGGAGTATGTAGGTAAGAAGACAAAAAATAGGGAGGATAAAYCAGAAAAAGAAGAAATGATATCAAAACGGAAAAAGATAAGAAGGGATAGATAAAAAATTGAAACTGACACGAAAGATAGATCAAACATGGGTTCAAAATAAGTATAAGAAGTATAGGAGAAGATAATTCAAGCTGAGTTTTTTAAAGAAAAATAGTTAGTGTCACCACTTGTATAGAAACGATTGATGATTATATCATCAACTGATTTTTTCTCATTTTCTTACCAACACCATACCCTCTCTCTCCCCGTTGTCCCCCCAAACGACGCCTTCTTTCTCTAGTTTTGGAAAATGACCGAGAGACTTTTCAAAAAATTCTCTCTCTTTCGATCACTCTCTCGATTTTTTCTCTTACAACCAATAATTGATAACTTGATCAGTCTCCATATATGTCGCAACCAATTTCATGCTACCGCTTATTACTAAAAATTGTGTATGTGTGAGTCAATTTCGTGGTGGCGGGTCTCGTTTCGCTTTTTTTCTCGCCAAACTGTTTTGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGAGAGTGTTAAAATGACCT</pcr_primer_p1>
		<pcr_primer_p2>TCAGCTTGAATTATCTTCTCCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTGGAGAGTGTTAAAATGACCTGCGGCCCCCAGAAGAGGGTTCTTAAAGAAAACACGTAAAAACCAAAAAAAGGAGTATGTAGGTAAGAAGACAAAAAATAGGGAGGATAAACCAGAAAAAGAAGAAATGATATCAAAACGGAAAAAGATAAGAAGGGATAGATAAAAAATTGAAACTGACACGAAAGATAGATCAAACATGGGTTCAAAATAAGTATAAGAAGTATAGGAGAAGATAATTCAAGCTGA</canonical_amplicon>
		<polymorphic_amplicon>GTGGAGAGTGTTAAAATGACCTGCGGCCCCCAGAAGAGGGTTCTTAAAGAAAACACGTAAAAACCAAAAAAAGGAGTATGTAGGTAAGAAGACAAAAAATAGGGAGGATAAAYCAGAAAAAGAAGAAATGATATCAAAACGGAAAAAGATAAGAAGGGATAGATAAAAAATTGAAACTGACACGAAAGATAGATCAAACATGGGTTCAAAATAAGTATAAGAAGTATAGGAGAAGATAATTCAAGCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6806</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>271594</contig_pos>
        <strand>+</strand>
        <context>AAAGTTGTCA[A/G]CTTTGAAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTCCAAGCGTCATATCTCATTTCGATGAAATTGTTTGAGAAAGTTGTCA</left_flank>
        <right_flank>CTTTGAAATTAAAGATGTATGTTGACTGTACATCCTTGGCTTGAAGTGGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGATATATTTCCGGGGATCTTTGATTTGGAAAAAAGAGGGAAAGGGCAAAGGGTGACAAAATTTTAAAGCTTTAACTATGGGTTTCGTTAAAAGAAAGTATACGGTATTTTCTTCTGTTGACTGGAACCTCGAACTTTTCTCTGAATATCTTGATTTATGTGAAAAAAATCAGGCAAAAATTCAAAAAATGGATTCTTATCTGAAAACAAAGGTGCCCTTAAAAGTTCATCAACTTTTCCTCTTTTTTGTATAACTGACGACAGGTGTCTAAAAATATAGTAGACTCTGTTGGACGAGACTGATATTTTCTTGGTTCATCGAACAAAATTAGTACTTCATTCTGTTGTTTACAGTTATTTGGATCAGCTTTCTCCAAATGAGACCCACCGCTTAAAGAGGTCATTTCTCTAATTTAGTGATGTTTCTGGAAGTTTTTACACTTGATCTGTTCCAAGCGTCATATCTCATTTCGATGAAATTGTTTGAGAAAGTTGTCAGCTTTGAAATTAAAGATGTATGTTGACTGTACATCCTTGGCTTGAAGTGGAATCGCGATAACCAGTGCATCTATTAGTGTGGATTGAAAGGGGCACTCAATACTGGGCTGAAAGTCCTCTCATTCTTCTGCAAAACTGGGAACCATATGTAGATCGAAATTCACTTTTTGCTGGTTTGAACGCCCATTTTTCTGCATACCGCGGCATTGGTAGCTTGAAAGCTCTACGGATTGAAAATTTCAATGAAGCTATTAAAGATAAATTCTTTTTTGATGAAAATTAGAGATTTTTAGAAACGACCTGTGATTGTCGGTCACCTTGAACATGTGTTTAAAACGATGTGTTTGAAACGATGCAGAATTTCTGGGAATCCATACGAGTTGCGCGAATAGTATTATTTTTTTAAAAAATGAACATAAAATTGTTTTTCCATAGTGTGTGAATGCCAACTCAACCCCCTTTTTTAGTCTACTACCACCTGCTTGTTATCAACTACAAGTT</canonical>
            <polymorphic>GTGATATATTTCCGGGGATCTTTGATTTGGAAAAAAGAGGGAAAGGGCAAAGGGTGACAAAATTTTAAAGCTTTAACTATGGGTTTCGTTAAAAGAAAGTATACGGTATTTTCTTCTGTTGACTGGAACCTCGAACTTTTCTCTGAATATCTTGATTTATGTGAAAAAAATCAGGCAAAAATTCAAAAAATGGATTCTTATCTGAAAACAAAGGTGCCCTTAAAAGTTCATCAACTTTTCCTCTTTTTTGTATAACTGACGACAGGTGTCTAAAAATATAGTAGACTCTGTTGGACGAGACTGATATTTTCTTGGTTCATCGAACAAAATTAGTACTTCATTCTGTTGTTTACAGTTATTTGGATCAGCTTTCTCCAAATGAGACCCACCGCTTAAAGAGGTCATTTCTCTAATTTAGTGATGTTTCTGGAAGTTTTTACACTTGATCTGTTCCAAGCGTCATATCTCATTTCGATGAAATTGTTTGAGAAAGTTGTCARCTTTGAAATTAAAGATGTATGTTGACTGTACATCCTTGGCTTGAAGTGGAATCGCGATAACCAGTGCATCTATTAGTGTGGATTGAAAGGGGCACTCAATACTGGGCTGAAAGTCCTCTCATTCTTCTGCAAAACTGGGAACCATATGTAGATCGAAATTCACTTTTTGCTGGTTTGAACGCCCATTTTTCTGCATACCGCGGCATTGGTAGCTTGAAAGCTCTACGGATTGAAAATTTCAATGAAGCTATTAAAGATAAATTCTTTTTTGATGAAAATTAGAGATTTTTAGAAACGACCTGTGATTGTCGGTCACCTTGAACATGTGTTTAAAACGATGTGTTTGAAACGATGCAGAATTTCTGGGAATCCATACGAGTTGCGCGAATAGTATTATTTTTTTAAAAAATGAACATAAAATTGTTTTTCCATAGTGTGTGAATGCCAACTCAACCCCCTTTTTTAGTCTACTACCACCTGCTTGTTATCAACTACAAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>298 253 212 132 70 27 8</canonical_bands>
                <polymorphic_bands>344 298 253 70 27 8</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>298 253 132 106 70 67 39 27 8</canonical_bands>
                <polymorphic_bands>298 253 171 106 70 67 27 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATTCTGTTGTTTACAGTTATTTG</pcr_primer_p1>
		<pcr_primer_p2>AATCCACACTAATAGATGCACTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCATTCTGTTGTTTACAGTTATTTGGATCAGCTTTCTCCAAATGAGACCCACCGCTTAAAGAGGTCATTTCTCTAATTTAGTGATGTTTCTGGAAGTTTTTACACTTGATCTGTTCCAAGCGTCATATCTCATTTCGATGAAATTGTTTGAGAAAGTTGTCAGCTTTGAAATTAAAGATGTATGTTGACTGTACATCCTTGGCTTGAAGTGGAATCGCGATAACCAGTGCATCTATTAGTGTGGATT</canonical_amplicon>
		<polymorphic_amplicon>TCATTCTGTTGTTTACAGTTATTTGGATCAGCTTTCTCCAAATGAGACCCACCGCTTAAAGAGGTCATTTCTCTAATTTAGTGATGTTTCTGGAAGTTTTTACACTTGATCTGTTCCAAGCGTCATATCTCATTTCGATGAAATTGTTTGAGAAAGTTGTCARCTTTGAAATTAAAGATGTATGTTGACTGTACATCCTTGGCTTGAAGTGGAATCGCGATAACCAGTGCATCTATTAGTGTGGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6807</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>271889</contig_pos>
        <strand></strand>
        <context>atttttagaa[A/T]cgacctgtga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGCTATTAAAGATAAATTCTTTTTTGATGAAAATTAGAGATTTTTAGAA</left_flank>
        <right_flank>CGACCTGTGATTGTCGGTCACCTTGAACATGTGTTTAAAACGATGTGTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGACTGATATTTTCTTGGTTCATCGAACAAAATTAGTACTTCATTCTGTTGTTTACAGTTATTTGGATCAGCTTTCTCCAAATGAGACCCACCGCTTAAAGAGGTCATTTCTCTAATTTAGTGATGTTTCTGGAAGTTTTTACACTTGATCTGTTCCAAGCGTCATATCTCATTTCGATGAAATTGTTTGAGAAAGTTGTCAGCTTTGAAATTAAAGATGTATGTTGACTGTACATCCTTGGCTTGAAGTGGAATCGCGATAACCAGTGCATCTATTAGTGTGGATTGAAAGGGGCACTCAATACTGGGCTGAAAGTCCTCTCATTCTTCTGCAAAACTGGGAACCATATGTAGATCGAAATTCACTTTTTGCTGGTTTGAACGCCCATTTTTCTGCATACCGCGGCATTGGTAGCTTGAAAGCTCTACGGATTGAAAATTTCAATGAAGCTATTAAAGATAAATTCTTTTTTGATGAAAATTAGAGATTTTTAGAAACGACCTGTGATTGTCGGTCACCTTGAACATGTGTTTAAAACGATGTGTTTGAAACGATGCAGAATTTCTGGGAATCCATACGAGTTGCGCGAATAGTATTATTTTTTTAAAAAATGAACATAAAATTGTTTTTCCATAGTGTGTGAATGCCAACTCAACCCCCTTTTTTAGTCTACTACCACCTGCTTGTTATCAACTACAAGTTTCGCGATTTGGAAACACACTATGAGAGACAACCAAAAGACTACGAGAAATCTCTTCTTGTTGATGCACTCTCAGTGATATTGTATTTCATAATTGCCATATACTCGTTCTTGCTTTTCAATGCAGAGGTCTATTACCCATATGGAATGGTACGTTGCTTAATTTTCGAAAATCTTCTTCCAAATACCACGTCTTAGTACACTTATCCGAACTACGACCCAGCCACCTATTTCCATTACGATACGTTCATCACATCGCTTCGTGTTATTCAAATAGGCTCGAGTTCGATGTTGCTC</canonical>
            <polymorphic>CGAGACTGATATTTTCTTGGTTCATCGAACAAAATTAGTACTTCATTCTGTTGTTTACAGTTATTTGGATCAGCTTTCTCCAAATGAGACCCACCGCTTAAAGAGGTCATTTCTCTAATTTAGTGATGTTTCTGGAAGTTTTTACACTTGATCTGTTCCAAGCGTCATATCTCATTTCGATGAAATTGTTTGAGAAAGTTGTCAGCTTTGAAATTAAAGATGTATGTTGACTGTACATCCTTGGCTTGAAGTGGAATCGCGATAACCAGTGCATCTATTAGTGTGGATTGAAAGGGGCACTCAATACTGGGCTGAAAGTCCTCTCATTCTTCTGCAAAACTGGGAACCATATGTAGATCGAAATTCACTTTTTGCTGGTTTGAACGCCCATTTTTCTGCATACCGCGGCATTGGTAGCTTGAAAGCTCTACGGATTGAAAATTTCAATGAAGCTATTAAAGATAAATTCTTTTTTGATGAAAATTAGAGATTTTTAGAAWCGACCTGTGATTGTCGGTCACCTTGAACATGTGTTTAAAACGATGTGTTTGAAACGATGCAGAATTTCTGGGAATCCATACGAGTTGCGCGAATAGTATTATTTTTTTAAAAAATGAACATAAAATTGTTTTTCCATAGTGTGTGAATGCCAACTCAACCCCCTTTTTTAGTCTACTACCACCTGCTTGTTATCAACTACAAGTTTCGCGATTTGGAAACACACTATGAGAGACAACCAAAAGACTACGAGAAATCTCTTCTTGTTGATGCACTCTCAGTGATATTGTATTTCATAATTGCCATATACTCGTTCTTGCTTTTCAATGCAGAGGTCTATTACCCATATGGAATGGTACGTTGCTTAATTTTCGAAAATCTTCTTCCAAATACCACGTCTTAGTACACTTATCCGAACTACGACCCAGCCACCTATTTCCATTACGATACGTTCATCACATCGCTTCGTGTTATTCAAATAGGCTCGAGTTCGATGTTGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACTGGGCTGAAAGTCCTC</pcr_primer_p1>
		<pcr_primer_p2>AATAATACTATTCGCGCAACTC</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>ATACTGGGCTGAAAGTCCTCTCATTCTTCTGCAAAACTGGGAACCATATGTAGATCGAAATTCACTTTTTGCTGGTTTGAACGCCCATTTTTCTGCATACCGCGGCATTGGTAGCTTGAAAGCTCTACGGATTGAAAATTTCAATGAAGCTATTAAAGATAAATTCTTTTTTGATGAAAATTAGAGATTTTTAGAAACGACCTGTGATTGTCGGTCACCTTGAACATGTGTTTAAAACGATGTGTTTGAAACGATGCAGAATTTCTGGGAATCCATACGAGTTGCGCGAATAGTATTATT</canonical_amplicon>
		<polymorphic_amplicon>ATACTGGGCTGAAAGTCCTCTCATTCTTCTGCAAAACTGGGAACCATATGTAGATCGAAATTCACTTTTTGCTGGTTTGAACGCCCATTTTTCTGCATACCGCGGCATTGGTAGCTTGAAAGCTCTACGGATTGAAAATTTCAATGAAGCTATTAAAGATAAATTCTTTTTTGATGAAAATTAGAGATTTTTAGAAWCGACCTGTGATTGTCGGTCACCTTGAACATGTGTTTAAAACGATGTGTTTGAAACGATGCAGAATTTCTGGGAATCCATACGAGTTGCGCGAATAGTATTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6808</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>272051</contig_pos>
        <strand>+</strand>
        <context>AACTCAACCC[C/T]CTTTTTTAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATGAACATAAAATTGTTTTTCCATAGTGTGTGAATGCCAACTCAACCC</left_flank>
        <right_flank>CTTTTTTAGTCTACTACCACCTGCTTGTTATCAACTACAAGTTTCGCGAT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTCATATCTCATTTCGATGAAATTGTTTGAGAAAGTTGTCAGCTTTGAAATTAAAGATGTATGTTGACTGTACATCCTTGGCTTGAAGTGGAATCGCGATAACCAGTGCATCTATTAGTGTGGATTGAAAGGGGCACTCAATACTGGGCTGAAAGTCCTCTCATTCTTCTGCAAAACTGGGAACCATATGTAGATCGAAATTCACTTTTTGCTGGTTTGAACGCCCATTTTTCTGCATACCGCGGCATTGGTAGCTTGAAAGCTCTACGGATTGAAAATTTCAATGAAGCTATTAAAGATAAATTCTTTTTTGATGAAAATTAGAGATTTTTAGAAACGACCTGTGATTGTCGGTCACCTTGAACATGTGTTTAAAACGATGTGTTTGAAACGATGCAGAATTTCTGGGAATCCATACGAGTTGCGCGAATAGTATTATTTTTTTAAAAAATGAACATAAAATTGTTTTTCCATAGTGTGTGAATGCCAACTCAACCCCCTTTTTTAGTCTACTACCACCTGCTTGTTATCAACTACAAGTTTCGCGATTTGGAAACACACTATGAGAGACAACCAAAAGACTACGAGAAATCTCTTCTTGTTGATGCACTCTCAGTGATATTGTATTTCATAATTGCCATATACTCGTTCTTGCTTTTCAATGCAGAGGTCTATTACCCATATGGAATGGTACGTTGCTTAATTTTCGAAAATCTTCTTCCAAATACCACGTCTTAGTACACTTATCCGAACTACGACCCAGCCACCTATTTCCATTACGATACGTTCATCACATCGCTTCGTGTTATTCAAATAGGCTCGAGTTCGATGTTGCTCATTGATTTCTCCCGAATTCTCAAGCACACCTACAGAGTTTACCGATCCGATCTTTGCTATAACGATAACGACCCAATCGATACTTTCAGCCGTAGTATCAACAAACAGATCACTCTTCATGTAAGCTATCTGAAGAAAGCAGAAAAAAAGAACAAACTGTTT</canonical>
            <polymorphic>CGTCATATCTCATTTCGATGAAATTGTTTGAGAAAGTTGTCAGCTTTGAAATTAAAGATGTATGTTGACTGTACATCCTTGGCTTGAAGTGGAATCGCGATAACCAGTGCATCTATTAGTGTGGATTGAAAGGGGCACTCAATACTGGGCTGAAAGTCCTCTCATTCTTCTGCAAAACTGGGAACCATATGTAGATCGAAATTCACTTTTTGCTGGTTTGAACGCCCATTTTTCTGCATACCGCGGCATTGGTAGCTTGAAAGCTCTACGGATTGAAAATTTCAATGAAGCTATTAAAGATAAATTCTTTTTTGATGAAAATTAGAGATTTTTAGAAACGACCTGTGATTGTCGGTCACCTTGAACATGTGTTTAAAACGATGTGTTTGAAACGATGCAGAATTTCTGGGAATCCATACGAGTTGCGCGAATAGTATTATTTTTTTAAAAAATGAACATAAAATTGTTTTTCCATAGTGTGTGAATGCCAACTCAACCCYCTTTTTTAGTCTACTACCACCTGCTTGTTATCAACTACAAGTTTCGCGATTTGGAAACACACTATGAGAGACAACCAAAAGACTACGAGAAATCTCTTCTTGTTGATGCACTCTCAGTGATATTGTATTTCATAATTGCCATATACTCGTTCTTGCTTTTCAATGCAGAGGTCTATTACCCATATGGAATGGTACGTTGCTTAATTTTCGAAAATCTTCTTCCAAATACCACGTCTTAGTACACTTATCCGAACTACGACCCAGCCACCTATTTCCATTACGATACGTTCATCACATCGCTTCGTGTTATTCAAATAGGCTCGAGTTCGATGTTGCTCATTGATTTCTCCCGAATTCTCAAGCACACCTACAGAGTTTACCGATCCGATCTTTGCTATAACGATAACGACCCAATCGATACTTTCAGCCGTAGTATCAACAAACAGATCACTCTTCATGTAAGCTATCTGAAGAAAGCAGAAAAAAAGAACAAACTGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAATTTCTGGGAATCCATAC</pcr_primer_p1>
		<pcr_primer_p2>CGAGTATATGGCAATTATGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGAATTTCTGGGAATCCATACGAGTTGCGCGAATAGTATTATTTTTTTAAAAAATGAACATAAAATTGTTTTTCCATAGTGTGTGAATGCCAACTCAACCCCCTTTTTTAGTCTACTACCACCTGCTTGTTATCAACTACAAGTTTCGCGATTTGGAAACACACTATGAGAGACAACCAAAAGACTACGAGAAATCTCTTCTTGTTGATGCACTCTCAGTGATATTGTATTTCATAATTGCCATATACTCG</canonical_amplicon>
		<polymorphic_amplicon>AGAATTTCTGGGAATCCATACGAGTTGCGCGAATAGTATTATTTTTTTAAAAAATGAACATAAAATTGTTTTTCCATAGTGTGTGAATGCCAACTCAACCCYCTTTTTTAGTCTACTACCACCTGCTTGTTATCAACTACAAGTTTCGCGATTTGGAAACACACTATGAGAGACAACCAAAAGACTACGAGAAATCTCTTCTTGTTGATGCACTCTCAGTGATATTGTATTTCATAATTGCCATATACTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6809</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>273365</contig_pos>
        <strand>+</strand>
        <context>AAATCAATTT[A/C]TCGATTTTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATCAACTTTTTTGTGTTACACACTTCCAGAAGTTTTGAAAAATCAATTT</left_flank>
        <right_flank>TCGATTTTTGCCCAAAAAATGTAGAATTACGTTGAAATGGAACAAGTTCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAACACTCACCACATCCCCTGAAGCAATGCAATGCAAGTGCTGGAAATGTCGTCCAAAACTCGACGGTACTAATCGGCCCATTTGTCGCTGGATTACGGAATGGTGTTGCCAGAACAATCCAAAAGAGGAAGCGCGCGAAGAAGAAAGACGTTGGATAGAAATGGGAGAACGAGGAGAGGGCGAAGTAGCCGTGGCGGCGACAGCAGAAGCAGAAGCAACGACGACCGGAGACGAGGCTGCGAATGCGCAAGAGCAACCGACGGAGACTACTCCGGCATTGCACACTACCGAAATTTATGTCTGAACCCCTGCACTTTGATTGTCATTTCTTTGAAAGTTCTATACATTTACTTCCACCGTCATCCTTATATATCTAAATTTTTATTTTCACCATCTCACCAGGCTTGTTTGGAACAAAATCGTTTCAGATAGCTCGGGAAAGAGGAAATCAACTTTTTTGTGTTACACACTTCCAGAAGTTTTGAAAAATCAATTTATCGATTTTTGCCCAAAAAATGTAGAATTACGTTGAAATGGAACAAGTTCCCATTTTGCAGCCTTCCTTTTGAGGGTAGAAAATATCTGGAAATCATAATTCTTCGAGATTTTTCCCAAATTGATTTTCACTTATTTTTGAATAATGCTGAAAGTTTGAAATTTTTTCCACGTTCTCGGTCTCCAAAATATCTGATCCTTCTCAAAAAATGGGATGAAACAATTTTGAACAAATTGGAAAATAGTGATTTCGGTTTTTTTTTGGATTCGAACAAGTTTTCATTCTGTTAGTTTGATCTCCAATATATATGTTGGCCCATGTATACACTTTATAATTACCTTTCACACATATATTTGTCTCATTAACTATCTCTGAAGACTTTCAAAATAAAGTTAAAAAACTGAAGAGCTTTTAGATTTGCAGGAAAGAAAAAAAAACATTATCGAATAAGTGAAAAAGTTGATATAAAAAAATTCAAGACTGTTTGGTAAACTATATCGA</canonical>
            <polymorphic>TCCAACACTCACCACATCCCCTGAAGCAATGCAATGCAAGTGCTGGAAATGTCGTCCAAAACTCGACGGTACTAATCGGCCCATTTGTCGCTGGATTACGGAATGGTGTTGCCAGAACAATCCAAAAGAGGAAGCGCGCGAAGAAGAAAGACGTTGGATAGAAATGGGAGAACGAGGAGAGGGCGAAGTAGCCGTGGCGGCGACAGCAGAAGCAGAAGCAACGACGACCGGAGACGAGGCTGCGAATGCGCAAGAGCAACCGACGGAGACTACTCCGGCATTGCACACTACCGAAATTTATGTCTGAACCCCTGCACTTTGATTGTCATTTCTTTGAAAGTTCTATACATTTACTTCCACCGTCATCCTTATATATCTAAATTTTTATTTTCACCATCTCACCAGGCTTGTTTGGAACAAAATCGTTTCAGATAGCTCGGGAAAGAGGAAATCAACTTTTTTGTGTTACACACTTCCAGAAGTTTTGAAAAATCAATTTMTCGATTTTTGCCCAAAAAATGTAGAATTACGTTGAAATGGAACAAGTTCCCATTTTGCAGCCTTCCTTTTGAGGGTAGAAAATATCTGGAAATCATAATTCTTCGAGATTTTTCCCAAATTGATTTTCACTTATTTTTGAATAATGCTGAAAGTTTGAAATTTTTTCCACGTTCTCGGTCTCCAAAATATCTGATCCTTCTCAAAAAATGGGATGAAACAATTTTGAACAAATTGGAAAATAGTGATTTCGGTTTTTTTTTGGATTCGAACAAGTTTTCATTCTGTTAGTTTGATCTCCAATATATATGTTGGCCCATGTATACACTTTATAATTACCTTTCACACATATATTTGTCTCATTAACTATCTCTGAAGACTTTCAAAATAAAGTTAAAAAACTGAAGAGCTTTTAGATTTGCAGGAAAGAAAAAAAAACATTATCGAATAAGTGAAAAAGTTGATATAAAAAAATTCAAGACTGTTTGGTAAACTATATCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTTTTATTTTCACCATCTCA</pcr_primer_p1>
		<pcr_primer_p2>AAAATCAATTTGGGAAAAATCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATTTTTATTTTCACCATCTCACCAGGCTTGTTTGGAACAAAATCGTTTCAGATAGCTCGGGAAAGAGGAAATCAACTTTTTTGTGTTACACACTTCCAGAAGTTTTGAAAAATCAATTTATCGATTTTTGCCCAAAAAATGTAGAATTACGTTGAAATGGAACAAGTTCCCATTTTGCAGCCTTCCTTTTGAGGGTAGAAAATATCTGGAAATCATAATTCTTCGAGATTTTTCCCAAATTGATTTT</canonical_amplicon>
		<polymorphic_amplicon>AAATTTTTATTTTCACCATCTCACCAGGCTTGTTTGGAACAAAATCGTTTCAGATAGCTCGGGAAAGAGGAAATCAACTTTTTTGTGTTACACACTTCCAGAAGTTTTGAAAAATCAATTTMTCGATTTTTGCCCAAAAAATGTAGAATTACGTTGAAATGGAACAAGTTCCCATTTTGCAGCCTTCCTTTTGAGGGTAGAAAATATCTGGAAATCATAATTCTTCGAGATTTTTCCCAAATTGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6810</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>273227</contig_pos>
        <strand>+</strand>
        <context>TACTTCCACC[G/T]TCATCCTTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTGCACTTTGATTGTCATTTCTTTGAAAGTTCTATACATTTACTTCCACC</left_flank>
        <right_flank>TCATCCTTATATATCTAAATTTTTATTTTCACCATCTCACCAGGCTTGTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAATACGACTTATCCTAAAAATGTTTTCTTCTTGATCTCAACTTAATTTTATTTCAGTTTTCGACATCATCGCCAAACTCTGGGTTTGCATTCATCCGATTGTGTACACTCTCATCTACATGTATCAAATCCATCGTCCAACACTCACCACATCCCCTGAAGCAATGCAATGCAAGTGCTGGAAATGTCGTCCAAAACTCGACGGTACTAATCGGCCCATTTGTCGCTGGATTACGGAATGGTGTTGCCAGAACAATCCAAAAGAGGAAGCGCGCGAAGAAGAAAGACGTTGGATAGAAATGGGAGAACGAGGAGAGGGCGAAGTAGCCGTGGCGGCGACAGCAGAAGCAGAAGCAACGACGACCGGAGACGAGGCTGCGAATGCGCAAGAGCAACCGACGGAGACTACTCCGGCATTGCACACTACCGAAATTTATGTCTGAACCCCTGCACTTTGATTGTCATTTCTTTGAAAGTTCTATACATTTACTTCCACCGTCATCCTTATATATCTAAATTTTTATTTTCACCATCTCACCAGGCTTGTTTGGAACAAAATCGTTTCAGATAGCTCGGGAAAGAGGAAATCAACTTTTTTGTGTTACACACTTCCAGAAGTTTTGAAAAATCAATTTATCGATTTTTGCCCAAAAAATGTAGAATTACGTTGAAATGGAACAAGTTCCCATTTTGCAGCCTTCCTTTTGAGGGTAGAAAATATCTGGAAATCATAATTCTTCGAGATTTTTCCCAAATTGATTTTCACTTATTTTTGAATAATGCTGAAAGTTTGAAATTTTTTCCACGTTCTCGGTCTCCAAAATATCTGATCCTTCTCAAAAAATGGGATGAAACAATTTTGAACAAATTGGAAAATAGTGATTTCGGTTTTTTTTTGGATTCGAACAAGTTTTCATTCTGTTAGTTTGATCTCCAATATATATGTTGGCCCATGTATACACTTTATAATTACCTTTCACACATATATTTGTCTCATT</canonical>
            <polymorphic>TCAAATACGACTTATCCTAAAAATGTTTTCTTCTTGATCTCAACTTAATTTTATTTCAGTTTTCGACATCATCGCCAAACTCTGGGTTTGCATTCATCCGATTGTGTACACTCTCATCTACATGTATCAAATCCATCGTCCAACACTCACCACATCCCCTGAAGCAATGCAATGCAAGTGCTGGAAATGTCGTCCAAAACTCGACGGTACTAATCGGCCCATTTGTCGCTGGATTACGGAATGGTGTTGCCAGAACAATCCAAAAGAGGAAGCGCGCGAAGAAGAAAGACGTTGGATAGAAATGGGAGAACGAGGAGAGGGCGAAGTAGCCGTGGCGGCGACAGCAGAAGCAGAAGCAACGACGACCGGAGACGAGGCTGCGAATGCGCAAGAGCAACCGACGGAGACTACTCCGGCATTGCACACTACCGAAATTTATGTCTGAACCCCTGCACTTTGATTGTCATTTCTTTGAAAGTTCTATACATTTACTTCCACCKTCATCCTTATATATCTAAATTTTTATTTTCACCATCTCACCAGGCTTGTTTGGAACAAAATCGTTTCAGATAGCTCGGGAAAGAGGAAATCAACTTTTTTGTGTTACACACTTCCAGAAGTTTTGAAAAATCAATTTATCGATTTTTGCCCAAAAAATGTAGAATTACGTTGAAATGGAACAAGTTCCCATTTTGCAGCCTTCCTTTTGAGGGTAGAAAATATCTGGAAATCATAATTCTTCGAGATTTTTCCCAAATTGATTTTCACTTATTTTTGAATAATGCTGAAAGTTTGAAATTTTTTCCACGTTCTCGGTCTCCAAAATATCTGATCCTTCTCAAAAAATGGGATGAAACAATTTTGAACAAATTGGAAAATAGTGATTTCGGTTTTTTTTTGGATTCGAACAAGTTTTCATTCTGTTAGTTTGATCTCCAATATATATGTTGGCCCATGTATACACTTTATAATTACCTTTCACACATATATTTGTCTCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 293 206</canonical_bands>
                <polymorphic_bands>794 206</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACCGAAATTTATGTCTGAACC</pcr_primer_p1>
		<pcr_primer_p2>TCCATTTCAACGTAATTCTACAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TACCGAAATTTATGTCTGAACCCCTGCACTTTGATTGTCATTTCTTTGAAAGTTCTATACATTTACTTCCACCGTCATCCTTATATATCTAAATTTTTATTTTCACCATCTCACCAGGCTTGTTTGGAACAAAATCGTTTCAGATAGCTCGGGAAAGAGGAAATCAACTTTTTTGTGTTACACACTTCCAGAAGTTTTGAAAAATCAATTTATCGATTTTTGCCCAAAAAATGTAGAATTACGTTGAAATGGA</canonical_amplicon>
		<polymorphic_amplicon>TACCGAAATTTATGTCTGAACCCCTGCACTTTGATTGTCATTTCTTTGAAAGTTCTATACATTTACTTCCACCKTCATCCTTATATATCTAAATTTTTATTTTCACCATCTCACCAGGCTTGTTTGGAACAAAATCGTTTCAGATAGCTCGGGAAAGAGGAAATCAACTTTTTTGTGTTACACACTTCCAGAAGTTTTGAAAAATCAATTTATCGATTTTTGCCCAAAAAATGTAGAATTACGTTGAAATGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6811</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>341311</contig_pos>
        <strand>+</strand>
        <context>TCCAGAATAT[C/T]AGACTTGATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGTTTCGCGATATGTGGTTGATATGTAGATCGTCTTATTTCCAGAATAT</left_flank>
        <right_flank>AGACTTGATGCAAAATCGGCCATGAGGATTTTTAAAGTTATAGGTATTGT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGTAGGGGAAAAAACTGAAAATAGTTGACCCCAAAAGACTACAGTTGCAATGGGTAAACATCTCAAGAGGAAAAGCAGGGCAATGTGGGAGGACAAGTTGGGGTTCCGCCAGAGAACCAACTTGTGTTTGTTTGGAGGTTTGAGAATTTCGGAAAAAAAACTGTTTGAATGGTTTCAAAATCGGGAACTAATCCTTAACTTTTCATATAGGTAAAGTCTTGAGAATCATGGTTTTTTGGCAGTGCGTGATAAATACGACCGATTGATTAAATAAAAATGTACGGATGAAATATGAAAACAACGAATACTTTAATTTCACAGAGGGAGAGATGGAGATTCTGGACAAATTGAAGACACGATTCGGAAGCGTTGCGGTGGTGCTCACTTTGCTAATCGGATGTACACCGGATGGATGCTAAGTGGTTCTCCATCTGAAACATAATCCACAAGTTTCGCGATATGTGGTTGATATGTAGATCGTCTTATTTCCAGAATATCAGACTTGATGCAAAATCGGCCATGAGGATTTTTAAAGTTATAGGTATTGTGAAATCTGTAATGGAAAATCACCATCCTGCCGATTCAATTTTTTTCCTTTTTGTGTATAAAATTCCAAAAGTCATCAATTGACAAAACTTTAATCATAATATCAAAAAAGTTTTGTTAGTCATTTTTTACTGTTTACTTCTCACCAATGTGTCTTTTCGGAAAGAAACCCTTGAAAACTGTTTTTTTCGACAAAAATTCTTCGAAAAATGTGAGAAGCGGAGTTTTGAAGTGTCATTGCTAAAAATTTGTTCCTTGTGTGTTGTACGTTTTGTGATGGCCTAACTTTTGCACGTGGAGTTTTCTAGGCCAACATGGTAAATTTACTTAGAATTGGGCTAAAACTCACCTGGGGTTTTCTTGGTCATTTTGAAGTGGCGGCCTAAAAATTCAATTTGCAAAATTTCGGCCATCACTTTAAAACGACCTAGAAAACACACCAATTGAATATC</canonical>
            <polymorphic>TTCGTAGGGGAAAAAACTGAAAATAGTTGACCCCAAAAGACTACAGTTGCAATGGGTAAACATCTCAAGAGGAAAAGCAGGGCAATGTGGGAGGACAAGTTGGGGTTCCGCCAGAGAACCAACTTGTGTTTGTTTGGAGGTTTGAGAATTTCGGAAAAAAAACTGTTTGAATGGTTTCAAAATCGGGAACTAATCCTTAACTTTTCATATAGGTAAAGTCTTGAGAATCATGGTTTTTTGGCAGTGCGTGATAAATACGACCGATTGATTAAATAAAAATGTACGGATGAAATATGAAAACAACGAATACTTTAATTTCACAGAGGGAGAGATGGAGATTCTGGACAAATTGAAGACACGATTCGGAAGCGTTGCGGTGGTGCTCACTTTGCTAATCGGATGTACACCGGATGGATGCTAAGTGGTTCTCCATCTGAAACATAATCCACAAGTTTCGCGATATGTGGTTGATATGTAGATCGTCTTATTTCCAGAATATYAGACTTGATGCAAAATCGGCCATGAGGATTTTTAAAGTTATAGGTATTGTGAAATCTGTAATGGAAAATCACCATCCTGCCGATTCAATTTTTTTCCTTTTTGTGTATAAAATTCCAAAAGTCATCAATTGACAAAACTTTAATCATAATATCAAAAAAGTTTTGTTAGTCATTTTTTACTGTTTACTTCTCACCAATGTGTCTTTTCGGAAAGAAACCCTTGAAAACTGTTTTTTTCGACAAAAATTCTTCGAAAAATGTGAGAAGCGGAGTTTTGAAGTGTCATTGCTAAAAATTTGTTCCTTGTGTGTTGTACGTTTTGTGATGGCCTAACTTTTGCACGTGGAGTTTTCTAGGCCAACATGGTAAATTTACTTAGAATTGGGCTAAAACTCACCTGGGGTTTTCTTGGTCATTTTGAAGTGGCGGCCTAAAAATTCAATTTGCAAAATTTCGGCCATCACTTTAAAACGACCTAGAAAACACACCAATTGAATATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>291 212 208 153 66 37 33</canonical_bands>
                <polymorphic_bands>291 274 212 153 37 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATTTCACAGAGGGAGAGATG</pcr_primer_p1>
		<pcr_primer_p2>CCATTACAGATTTCACAATACCT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAATTTCACAGAGGGAGAGATGGAGATTCTGGACAAATTGAAGACACGATTCGGAAGCGTTGCGGTGGTGCTCACTTTGCTAATCGGATGTACACCGGATGGATGCTAAGTGGTTCTCCATCTGAAACATAATCCACAAGTTTCGCGATATGTGGTTGATATGTAGATCGTCTTATTTCCAGAATATCAGACTTGATGCAAAATCGGCCATGAGGATTTTTAAAGTTATAGGTATTGTGAAATCTGTAATGG</canonical_amplicon>
		<polymorphic_amplicon>TAATTTCACAGAGGGAGAGATGGAGATTCTGGACAAATTGAAGACACGATTCGGAAGCGTTGCGGTGGTGCTCACTTTGCTAATCGGATGTACACCGGATGGATGCTAAGTGGTTCTCCATCTGAAACATAATCCACAAGTTTCGCGATATGTGGTTGATATGTAGATCGTCTTATTTCCAGAATATYAGACTTGATGCAAAATCGGCCATGAGGATTTTTAAAGTTATAGGTATTGTGAAATCTGTAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6812</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>347860</contig_pos>
        <strand>+</strand>
        <context>TCAAACTCTT[C/T]CTTGTTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTTTTCGTGTTAAAATAAAAGTAACACAACTGACACTATCAAACTCTT</left_flank>
        <right_flank>CTTGTTTTTTTCTTTTCATTTTTTTCCAGAGATCTCAGGAGGATTATTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGCTTTGCATTTCTCCTGGCCTTTGTCATCAATTTGTTCTCACTTTTTTTGCAGAACCTGGAAGTAGGAAAAGTCATTAGAATAATTTGAAATTGGAACCGGAAGAAAACTTGTAAATATATAATGAGCATTGAGAAAAACAGAAAAACTGCTCTATAAAAAACCACCATGTCTGGAAATTGCAAGAAAAAAAACTAGCCAGTCTTTTTTTGACTTCTTTGCATGCGATTGTAATTGGGTGACAAATATGTCTGAGGAGTAGGAAAGCCAATAAAACGGTGATGGTGGTACTTAGGATGTGGCTGAAAACGGAACACTCAGAAAGATAGAAAGCTTTCTTGTTTTTTCGGTTCTATTAGGGCTTTCCAGAACCAGGAAGTGGTCCCACTCAGGTTCCGCCTTTATTTGTTTCAGCGTTCCTGAATTTCCTATTTCACCAAATTTCTTTTTCTTTTCGTGTTAAAATAAAAGTAACACAACTGACACTATCAAACTCTTCCTTGTTTTTTTCTTTTCATTTTTTTCCAGAGATCTCAGGAGGATTATTGAGATTGGAGAGAAAAAAGAGAAGTTTCTTGGATTTTATTGTCTCTTTTTTGCAAGAATAGACGGTGTTATTAAAACTGTCTCTTTTTTTGTTATACTTCAAATCCGTTCTTTTTCCAGATTCCTTTTCAGTGATAGTCACTTTTCTATGCTCTACAAGAAAACAAAATTTTCTATGAATGACTCATTTTGACTATTTACGAACTGTTTTGCGTTGAAAAATAAATTTCGTAGGCTTTGTTAGTTGGCGTCCATTTTAAACTATTTTTTGGAAACAAAAAAAACTTTATAATTTAATGATATCAATAGTAATTTCCTCGAAAACTCCTCCTCTTCCACCCAAACATTTCCTGTGTCTGGGATCGAATTTCCTGTCGCTCTGTCATCTTTCCATCAGTGTCTATGGATACTGGATCGTTTCAATTTTGTTTTTTCCTCTCGATCGAAATGTTT</canonical>
            <polymorphic>GTGCTTTGCATTTCTCCTGGCCTTTGTCATCAATTTGTTCTCACTTTTTTTGCAGAACCTGGAAGTAGGAAAAGTCATTAGAATAATTTGAAATTGGAACCGGAAGAAAACTTGTAAATATATAATGAGCATTGAGAAAAACAGAAAAACTGCTCTATAAAAAACCACCATGTCTGGAAATTGCAAGAAAAAAAACTAGCCAGTCTTTTTTTGACTTCTTTGCATGCGATTGTAATTGGGTGACAAATATGTCTGAGGAGTAGGAAAGCCAATAAAACGGTGATGGTGGTACTTAGGATGTGGCTGAAAACGGAACACTCAGAAAGATAGAAAGCTTTCTTGTTTTTTCGGTTCTATTAGGGCTTTCCAGAACCAGGAAGTGGTCCCACTCAGGTTCCGCCTTTATTTGTTTCAGCGTTCCTGAATTTCCTATTTCACCAAATTTCTTTTTCTTTTCGTGTTAAAATAAAAGTAACACAACTGACACTATCAAACTCTTYCTTGTTTTTTTCTTTTCATTTTTTTCCAGAGATCTCAGGAGGATTATTGAGATTGGAGAGAAAAAAGAGAAGTTTCTTGGATTTTATTGTCTCTTTTTTGCAAGAATAGACGGTGTTATTAAAACTGTCTCTTTTTTTGTTATACTTCAAATCCGTTCTTTTTCCAGATTCCTTTTCAGTGATAGTCACTTTTCTATGCTCTACAAGAAAACAAAATTTTCTATGAATGACTCATTTTGACTATTTACGAACTGTTTTGCGTTGAAAAATAAATTTCGTAGGCTTTGTTAGTTGGCGTCCATTTTAAACTATTTTTTGGAAACAAAAAAAACTTTATAATTTAATGATATCAATAGTAATTTCCTCGAAAACTCCTCCTCTTCCACCCAAACATTTCCTGTGTCTGGGATCGAATTTCCTGTCGCTCTGTCATCTTTCCATCAGTGTCTATGGATACTGGATCGTTTCAATTTTGTTTTTTCCTCTCGATCGAAATGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCCTATTTCACCAAATTTCT</pcr_primer_p1>
		<pcr_primer_p2>GAAAAAGAACGGATTTGAAGTAT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>ATTTCCTATTTCACCAAATTTCTTTTTCTTTTCGTGTTAAAATAAAAGTAACACAACTGACACTATCAAACTCTTCCTTGTTTTTTTCTTTTCATTTTTTTCCAGAGATCTCAGGAGGATTATTGAGATTGGAGAGAAAAAAGAGAAGTTTCTTGGATTTTATTGTCTCTTTTTTGCAAGAATAGACGGTGTTATTAAAACTGTCTCTTTTTTTGTTATACTTCAAATCCGTTCTTTTTC</canonical_amplicon>
		<polymorphic_amplicon>ATTTCCTATTTCACCAAATTTCTTTTTCTTTTCGTGTTAAAATAAAAGTAACACAACTGACACTATCAAACTCTTYCTTGTTTTTTTCTTTTCATTTTTTTCCAGAGATCTCAGGAGGATTATTGAGATTGGAGAGAAAAAAGAGAAGTTTCTTGGATTTTATTGTCTCTTTTTTGCAAGAATAGACGGTGTTATTAAAACTGTCTCTTTTTTTGTTATACTTCAAATCCGTTCTTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6813</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>371328</contig_pos>
        <strand>+</strand>
        <context>AAACTTGAAC[G/T]AAGGTACACC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCTCACTATGTTTCAAAAAGATCAGACGAGATACTTCAAAAACTTGAAC</left_flank>
        <right_flank>AAGGTACACCAATTATCAATTGGGATCAATTTCTCATGATTTGTGAGGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCCAGTGAAAGTGGAGTCGATCGAGGAGGAAGAGAATAATATGCAACTAATCGTGTTCGATGTTATTCAAGAGGATGTGCCTCAGGATACTGAAGCTATGGGGCCCGTGTCAATCGTGAGAAAACAAACGGAATTCAATGATCTGCAACCATATCTTGGGGACATTGTTGGATTAACCGAGATTGGGTTTGCGAAGAAGACCGAAATGACAGCTAATAAGAGAAAGCTGGGTGGGGATCGCATGGATAATCTAATTCTCCCGTTCAACTGCTCCATGGGTTGGCCAACGTGGTCGGTAAGTGTTTTTTCTCCTTTTAAGTGGACAGTTTTTCATTTGATCATTCAAAAAAGTTTTTTTTTCAGAGGAATCAAAGAATGGAGTTTTTTGGCCAACTTTTTTCTCCAGAAACGACCAAAAAACTCATAGAGAAAGTCAAGGCCGGATATGTTCTCACTATGTTTCAAAAAGATCAGACGAGATACTTCAAAAACTTGAACTAAGGTACACCAATTATCAATTGGGATCAATTTCTCATGATTTGTGAGGAACTTGATAAAATCAAGAGATTTCATTCCTAAGCTCATCATATAAGATTATCTTCTTTCTCCTTTTACCTCGAAACATGCCCAGACTTCCGTTGTTTCCAATCCCCTCATCGCTGTTCACTTTTTTGTTCCATCCGTATTGTTTTCTTTCATTCCCATTTCATTATTTTGCCCAGAAACATATTTACACTCTGAGTATATTTAATCAAACACCTATTTAAATTTTTCCATGATTGAGGATTCAAATGAATATGGTTTTTAGCGAAATTTTTATTTTAAAGACAGTATTCAAACAGGACAAAATTTTATGAAACAGTTAATAAAGTTTTTGCATATTCGAAACTGAGAAAGGAGATGCAGAAGAAATGGAAAAAAAGTTAAGGACAAAACAATAAGCGCTTATTTGATTCATCTTTCAGATTGAAAATTCTGAAATCGGCCAGATAAAAATAC</canonical>
            <polymorphic>TCCCAGTGAAAGTGGAGTCGATCGAGGAGGAAGAGAATAATATGCAACTAATCGTGTTCGATGTTATTCAAGAGGATGTGCCTCAGGATACTGAAGCTATGGGGCCCGTGTCAATCGTGAGAAAACAAACGGAATTCAATGATCTGCAACCATATCTTGGGGACATTGTTGGATTAACCGAGATTGGGTTTGCGAAGAAGACCGAAATGACAGCTAATAAGAGAAAGCTGGGTGGGGATCGCATGGATAATCTAATTCTCCCGTTCAACTGCTCCATGGGTTGGCCAACGTGGTCGGTAAGTGTTTTTTCTCCTTTTAAGTGGACAGTTTTTCATTTGATCATTCAAAAAAGTTTTTTTTTCAGAGGAATCAAAGAATGGAGTTTTTTGGCCAACTTTTTTCTCCAGAAACGACCAAAAAACTCATAGAGAAAGTCAAGGCCGGATATGTTCTCACTATGTTTCAAAAAGATCAGACGAGATACTTCAAAAACTTGAACKAAGGTACACCAATTATCAATTGGGATCAATTTCTCATGATTTGTGAGGAACTTGATAAAATCAAGAGATTTCATTCCTAAGCTCATCATATAAGATTATCTTCTTTCTCCTTTTACCTCGAAACATGCCCAGACTTCCGTTGTTTCCAATCCCCTCATCGCTGTTCACTTTTTTGTTCCATCCGTATTGTTTTCTTTCATTCCCATTTCATTATTTTGCCCAGAAACATATTTACACTCTGAGTATATTTAATCAAACACCTATTTAAATTTTTCCATGATTGAGGATTCAAATGAATATGGTTTTTAGCGAAATTTTTATTTTAAAGACAGTATTCAAACAGGACAAAATTTTATGAAACAGTTAATAAAGTTTTTGCATATTCGAAACTGAGAAAGGAGATGCAGAAGAAATGGAAAAAAAGTTAAGGACAAAACAATAAGCGCTTATTTGATTCATCTTTCAGATTGAAAATTCTGAAATCGGCCAGATAAAAATAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>417 162 151 110 82 78</canonical_bands>
                <polymorphic_bands>495 162 151 110 82</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCCTTTTAAGTGGACAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTATCAAGTTCCTCACAAATCAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCCTTTTAAGTGGACAGTTTTTCATTTGATCATTCAAAAAAGTTTTTTTTTCAGAGGAATCAAAGAATGGAGTTTTTTGGCCAACTTTTTTCTCCAGAAACGACCAAAAAACTCATAGAGAAAGTCAAGGCCGGATATGTTCTCACTATGTTTCAAAAAGATCAGACGAGATACTTCAAAAACTTGAACTAAGGTACACCAATTATCAATTGGGATCAATTTCTCATGATTTGTGAGGAACTTGATAA</canonical_amplicon>
		<polymorphic_amplicon>CTCCTTTTAAGTGGACAGTTTTTCATTTGATCATTCAAAAAAGTTTTTTTTTCAGAGGAATCAAAGAATGGAGTTTTTTGGCCAACTTTTTTCTCCAGAAACGACCAAAAAACTCATAGAGAAAGTCAAGGCCGGATATGTTCTCACTATGTTTCAAAAAGATCAGACGAGATACTTCAAAAACTTGAACKAAGGTACACCAATTATCAATTGGGATCAATTTCTCATGATTTGTGAGGAACTTGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6814</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>371194</contig_pos>
        <strand></strand>
        <context>TTTTTTCAGA[G/A]GAATCAAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTAAGTGGACAGTTTTTCATTTGATCATTCAAAAAAGTTTTTTTTTCAGA</left_flank>
        <right_flank>GAATCAAAGAATGGAGTTTTTTGGCCAACTTTTTTCTCCAGAAACGACCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGACAGGCTTGAACCCCCAGATAAATGGAGAACAAATATTTAATTATTTCGATGAAGTCCCAGAGCAGCAGAATGATCAGATAAAGGAAAAAATGCCACCAAGCGTCCGCCCAGTCAACGGTGAAATGGAAATCCCAGTGAAAGTGGAGTCGATCGAGGAGGAAGAGAATAATATGCAACTAATCGTGTTCGATGTTATTCAAGAGGATGTGCCTCAGGATACTGAAGCTATGGGGCCCGTGTCAATCGTGAGAAAACAAACGGAATTCAATGATCTGCAACCATATCTTGGGGACATTGTTGGATTAACCGAGATTGGGTTTGCGAAGAAGACCGAAATGACAGCTAATAAGAGAAAGCTGGGTGGGGATCGCATGGATAATCTAATTCTCCCGTTCAACTGCTCCATGGGTTGGCCAACGTGGTCGGTAAGTGTTTTTTCTCCTTTTAAGTGGACAGTTTTTCATTTGATCATTCAAAAAAGTTTTTTTTTCAGAGGAATCAAAGAATGGAGTTTTTTGGCCAACTTTTTTCTCCAGAAACGACCAAAAAACTCATAGAGAAAGTCAAGGCCGGATATGTTCTCACTATGTTTCAAAAAGATCAGACGAGATACTTCAAAAACTTGAACTAAGGTACACCAATTATCAATTGGGATCAATTTCTCATGATTTGTGAGGAACTTGATAAAATCAAGAGATTTCATTCCTAAGCTCATCATATAAGATTATCTTCTTTCTCCTTTTACCTCGAAACATGCCCAGACTTCCGTTGTTTCCAATCCCCTCATCGCTGTTCACTTTTTTGTTCCATCCGTATTGTTTTCTTTCATTCCCATTTCATTATTTTGCCCAGAAACATATTTACACTCTGAGTATATTTAATCAAACACCTATTTAAATTTTTCCATGATTGAGGATTCAAATGAATATGGTTTTTAGCGAAATTTTTATTTTAAAGACAGTATTCAAACAGGACAAAATTTTATGAAACAGTTA</canonical>
            <polymorphic>GGAGACAGGCTTGAACCCCCAGATAAATGGAGAACAAATATTTAATTATTTCGATGAAGTCCCAGAGCAGCAGAATGATCAGATAAAGGAAAAAATGCCACCAAGCGTCCGCCCAGTCAACGGTGAAATGGAAATCCCAGTGAAAGTGGAGTCGATCGAGGAGGAAGAGAATAATATGCAACTAATCGTGTTCGATGTTATTCAAGAGGATGTGCCTCAGGATACTGAAGCTATGGGGCCCGTGTCAATCGTGAGAAAACAAACGGAATTCAATGATCTGCAACCATATCTTGGGGACATTGTTGGATTAACCGAGATTGGGTTTGCGAAGAAGACCGAAATGACAGCTAATAAGAGAAAGCTGGGTGGGGATCGCATGGATAATCTAATTCTCCCGTTCAACTGCTCCATGGGTTGGCCAACGTGGTCGGTAAGTGTTTTTTCTCCTTTTAAGTGGACAGTTTTTCATTTGATCATTCAAAAAAGTTTTTTTTTCAGARGAATCAAAGAATGGAGTTTTTTGGCCAACTTTTTTCTCCAGAAACGACCAAAAAACTCATAGAGAAAGTCAAGGCCGGATATGTTCTCACTATGTTTCAAAAAGATCAGACGAGATACTTCAAAAACTTGAACTAAGGTACACCAATTATCAATTGGGATCAATTTCTCATGATTTGTGAGGAACTTGATAAAATCAAGAGATTTCATTCCTAAGCTCATCATATAAGATTATCTTCTTTCTCCTTTTACCTCGAAACATGCCCAGACTTCCGTTGTTTCCAATCCCCTCATCGCTGTTCACTTTTTTGTTCCATCCGTATTGTTTTCTTTCATTCCCATTTCATTATTTTGCCCAGAAACATATTTACACTCTGAGTATATTTAATCAAACACCTATTTAAATTTTTCCATGATTGAGGATTCAAATGAATATGGTTTTTAGCGAAATTTTTATTTTAAAGACAGTATTCAAACAGGACAAAATTTTATGAAACAGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCTTTTAAGTGGACAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTATCAAGTTCCTCACAAATCAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCCTTTTAAGTGGACAGTTTTTCATTTGATCATTCAAAAAAGTTTTTTTTTCAGAGGAATCAAAGAATGGAGTTTTTTGGCCAACTTTTTTCTCCAGAAACGACCAAAAAACTCATAGAGAAAGTCAAGGCCGGATATGTTCTCACTATGTTTCAAAAAGATCAGACGAGATACTTCAAAAACTTGAACTAAGGTACACCAATTATCAATTGGGATCAATTTCTCATGATTTGTGAGGAACTTGATAA</canonical_amplicon>
		<polymorphic_amplicon>CTCCTTTTAAGTGGACAGTTTTTCATTTGATCATTCAAAAAAGTTTTTTTTTCAGARGAATCAAAGAATGGAGTTTTTTGGCCAACTTTTTTCTCCAGAAACGACCAAAAAACTCATAGAGAAAGTCAAGGCCGGATATGTTCTCACTATGTTTCAAAAAGATCAGACGAGATACTTCAAAAACTTGAACTAAGGTACACCAATTATCAATTGGGATCAATTTCTCATGATTTGTGAGGAACTTGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6815</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>418523</contig_pos>
        <strand>+</strand>
        <context>CCTTCTTCTC[C/T]TTCCAAGAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACTTTCAAAAACCACTTCGCCAAACTAGTTTTCTTCCTCCTTCTTCTC</left_flank>
        <right_flank>TTCCAAGAGCTCTTTTCAAAATACAACACTACCAAAAAGCAAGGAGAGAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGAATGCATTCCAAACTGGAATCAAAATGTCGTCGTTGTCGCCGGAGGAGCCAGTGATGTACAAAAAAGGAGAGGAAGGAAAAGGGCAGTGGATACAAGCGTGAAAACCGAGACATGGAAGGCTTGTCTTGGAGAGGCGGCGACTCACTTAACACCGAAAAGCGAAGGGAAAGGGAGAGAAAAAGACTCGAAAATCAATAGTAGAGCGCAATGAGCACCGAAATTCAAATGGAAGAAAAAAAAGAGAAAGAGTGAATGCATCGAAAAAATGGTGGAGCAGTTGGGAAAAAAATATATATAAAAGACTGGTGTGCAGAAAGTTCTGAATGGTCGTTTGCTAAGAGAGTCCTCATCCAAATCAGACAAAAGTTGCAAGATTTAAGATTACAAAATTTCTCACTTCGACACGGAAATTGAAGCAGAGAACCAAAAGGTTTGGAACTTTTAGAAACTTTCAAAAACCACTTCGCCAAACTAGTTTTCTTCCTCCTTCTTCTCCTTCCAAGAGCTCTTTTCAAAATACAACACTACCAAAAAGCAAGGAGAGAGGGAACAAAACAAAAACATGGCATAACATGGCACATTTCATGTTTTTGTCGTGGTGAAGTGGACAATTTTCCTGAGCCGATGGGTTTTGGAGACATGGATTGATGCTCTGTTGGCGCTAATGCTATGCATTTTTGTCTGTCTAAAGCCGATAATCCGTGATTAGTTCTCCTGAACGGATTGGAAGAAAGATATCTCTAAAAATGTCGCATTCTTTTTTTGTTGGTAGAAGGAATATTACAAAAATTATGTATTCCTCTTTAGAAGGAAAACATGTTTTTGACACGCGCAAAGATGTTTAGTTGTTTTTTCGTCTCTTTTTTTTAGACCTTTCTAACTGGGAAAGTGGAGAAATGTTCAAAAATGAAGTACAACAAAATATCTACAAGCAAAAATACAAATTCCACGTATTACTTATTCTAACGAAACCCCGATTTTTGAATGAACCAGCAG</canonical>
            <polymorphic>AGGAATGCATTCCAAACTGGAATCAAAATGTCGTCGTTGTCGCCGGAGGAGCCAGTGATGTACAAAAAAGGAGAGGAAGGAAAAGGGCAGTGGATACAAGCGTGAAAACCGAGACATGGAAGGCTTGTCTTGGAGAGGCGGCGACTCACTTAACACCGAAAAGCGAAGGGAAAGGGAGAGAAAAAGACTCGAAAATCAATAGTAGAGCGCAATGAGCACCGAAATTCAAATGGAAGAAAAAAAAGAGAAAGAGTGAATGCATCGAAAAAATGGTGGAGCAGTTGGGAAAAAAATATATATAAAAGACTGGTGTGCAGAAAGTTCTGAATGGTCGTTTGCTAAGAGAGTCCTCATCCAAATCAGACAAAAGTTGCAAGATTTAAGATTACAAAATTTCTCACTTCGACACGGAAATTGAAGCAGAGAACCAAAAGGTTTGGAACTTTTAGAAACTTTCAAAAACCACTTCGCCAAACTAGTTTTCTTCCTCCTTCTTCTCYTTCCAAGAGCTCTTTTCAAAATACAACACTACCAAAAAGCAAGGAGAGAGGGAACAAAACAAAAACATGGCATAACATGGCACATTTCATGTTTTTGTCGTGGTGAAGTGGACAATTTTCCTGAGCCGATGGGTTTTGGAGACATGGATTGATGCTCTGTTGGCGCTAATGCTATGCATTTTTGTCTGTCTAAAGCCGATAATCCGTGATTAGTTCTCCTGAACGGATTGGAAGAAAGATATCTCTAAAAATGTCGCATTCTTTTTTTGTTGGTAGAAGGAATATTACAAAAATTATGTATTCCTCTTTAGAAGGAAAACATGTTTTTGACACGCGCAAAGATGTTTAGTTGTTTTTTCGTCTCTTTTTTTTAGACCTTTCTAACTGGGAAAGTGGAGAAATGTTCAAAAATGAAGTACAACAAAATATCTACAAGCAAAAATACAAATTCCACGTATTACTTATTCTAACGAAACCCCGATTTTTGAATGAACCAGCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCGTTTGCTAAGAGAGTCCT</pcr_primer_p1>
		<pcr_primer_p2>ATGTTATGCCATGTTTTTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTCGTTTGCTAAGAGAGTCCTCATCCAAATCAGACAAAAGTTGCAAGATTTAAGATTACAAAATTTCTCACTTCGACACGGAAATTGAAGCAGAGAACCAAAAGGTTTGGAACTTTTAGAAACTTTCAAAAACCACTTCGCCAAACTAGTTTTCTTCCTCCTTCTTCTCCTTCCAAGAGCTCTTTTCAAAATACAACACTACCAAAAAGCAAGGAGAGAGGGAACAAAACAAAAACATGGCATAACAT</canonical_amplicon>
		<polymorphic_amplicon>GTCGTTTGCTAAGAGAGTCCTCATCCAAATCAGACAAAAGTTGCAAGATTTAAGATTACAAAATTTCTCACTTCGACACGGAAATTGAAGCAGAGAACCAAAAGGTTTGGAACTTTTAGAAACTTTCAAAAACCACTTCGCCAAACTAGTTTTCTTCCTCCTTCTTCTCYTTCCAAGAGCTCTTTTCAAAATACAACACTACCAAAAAGCAAGGAGAGAGGGAACAAAACAAAAACATGGCATAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6816</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>420186</contig_pos>
        <strand>+</strand>
        <context>GTAGAAAATT[A/G]AGTTGATAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAAGATGAGGAAGGAGATGAATACGAGGGTAAGGAAGATGTAGAAAATT</left_flank>
        <right_flank>AGTTGATAAGATGACAAATAATTTTAAAGGTTTTTTTAAATAAATATCTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGAAAATGTTTTTTATTAGTGTAAAAAAGGTAAAGAGCGGAGCGACGAACTATCACTGTGGAATCCAAAGACAGGTGTTAGGAGCACCGGAGAAAACATGATAGTTTTAAAATGTACTACTAAATATTGCATCAAATTTTTAGTATCGGTGGGAAATGTTTGAACGTATTGACAATTAACAAAAACATTTATTTTCACCGCTACTGCGGTTTTGCTGTCATGCCGTTGTACATCGCAGTTAACGACCATGCATGTCATTATCATGGAGGATGGATACAGCGTGATCATTAAAAACAAAGTATATCTCTAAACATGAGTTTTTAAGATCACCATCAATGAGGAATGGCACAAATTTTATTACCAGCACATGTTGCCATCGCACATAGACAACCTTACAATTGGTGGCGACGTTTTGGTGAACATCGTCGTCGTTGAAGAACTAGAAGAGGAAGATGAGGAAGGAGATGAATACGAGGGTAAGGAAGATGTAGAAAATTGAGTTGATAAGATGACAAATAATTTTAAAGGTTTTTTTAAATAAATATCTCTTACCGTTGTTTTAAAACCTGTTTGGTCTACCACGGAAGGGCGTAGACCATGAAAAAAATCTAAGGGCTATAAACAATTCTAAGGACCAAAATAACCGACGGGAGCCAAAAACTGTACAATTGATGAATCACTGATACCGTAATTGCTCTAATTGAAGCCTGACCTGTGCGAGCAATTCGAGTTCGATTATCTCAGTTCCAATGAGAGATCTTAAAAAGTTGTCAATTGATAAAACATTGGTGATATCATGATGAATGATTTATATGTTGAAACATTTTTTTCTCCTAGGAACCGAGACAACTGAGCTCAAAAAGCGCGTATTTGGTGGGCACCTAACAAAGCAATTACGGTATGTCTCTAGCAGATCAAATGCGGTATGCATTTTCCTAGCTGTTTTATTAGTCGTCTACTTTTATCGAATTCATCTCAGTGTCTGAAAGAGGTAACAA</canonical>
            <polymorphic>ACTGAAAATGTTTTTTATTAGTGTAAAAAAGGTAAAGAGCGGAGCGACGAACTATCACTGTGGAATCCAAAGACAGGTGTTAGGAGCACCGGAGAAAACATGATAGTTTTAAAATGTACTACTAAATATTGCATCAAATTTTTAGTATCGGTGGGAAATGTTTGAACGTATTGACAATTAACAAAAACATTTATTTTCACCGCTACTGCGGTTTTGCTGTCATGCCGTTGTACATCGCAGTTAACGACCATGCATGTCATTATCATGGAGGATGGATACAGCGTGATCATTAAAAACAAAGTATATCTCTAAACATGAGTTTTTAAGATCACCATCAATGAGGAATGGCACAAATTTTATTACCAGCACATGTTGCCATCGCACATAGACAACCTTACAATTGGTGGCGACGTTTTGGTGAACATCGTCGTCGTTGAAGAACTAGAAGAGGAAGATGAGGAAGGAGATGAATACGAGGGTAAGGAAGATGTAGAAAATTRAGTTGATAAGATGACAAATAATTTTAAAGGTTTTTTTAAATAAATATCTCTTACCGTTGTTTTAAAACCTGTTTGGTCTACCACGGAAGGGCGTAGACCATGAAAAAAATCTAAGGGCTATAAACAATTCTAAGGACCAAAATAACCGACGGGAGCCAAAAACTGTACAATTGATGAATCACTGATACCGTAATTGCTCTAATTGAAGCCTGACCTGTGCGAGCAATTCGAGTTCGATTATCTCAGTTCCAATGAGAGATCTTAAAAAGTTGTCAATTGATAAAACATTGGTGATATCATGATGAATGATTTATATGTTGAAACATTTTTTTCTCCTAGGAACCGAGACAACTGAGCTCAAAAAGCGCGTATTTGGTGGGCACCTAACAAAGCAATTACGGTATGTCTCTAGCAGATCAAATGCGGTATGCATTTTCCTAGCTGTTTTATTAGTCGTCTACTTTTATCGAATTCATCTCAGTGTCTGAAAGAGGTAACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTAAGATCACCATCAATGAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTAAAACAACGGTAAGAGATATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTTTAAGATCACCATCAATGAGGAATGGCACAAATTTTATTACCAGCACATGTTGCCATCGCACATAGACAACCTTACAATTGGTGGCGACGTTTTGGTGAACATCGTCGTCGTTGAAGAACTAGAAGAGGAAGATGAGGAAGGAGATGAATACGAGGGTAAGGAAGATGTAGAAAATTGAGTTGATAAGATGACAAATAATTTTAAAGGTTTTTTTAAATAAATATCTCTTACCGTTGTTTTAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTAAGATCACCATCAATGAGGAATGGCACAAATTTTATTACCAGCACATGTTGCCATCGCACATAGACAACCTTACAATTGGTGGCGACGTTTTGGTGAACATCGTCGTCGTTGAAGAACTAGAAGAGGAAGATGAGGAAGGAGATGAATACGAGGGTAAGGAAGATGTAGAAAATTRAGTTGATAAGATGACAAATAATTTTAAAGGTTTTTTTAAATAAATATCTCTTACCGTTGTTTTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6817</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>420129</contig_pos>
        <strand>+</strand>
        <context>GTTGAAGAAC[C/T]AGAAGAGGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTTACAATTGGTGGCGACGTTTTGGTGAACATCGTCGTCGTTGAAGAAC</left_flank>
        <right_flank>AGAAGAGGAAGATGAGGAAGGAGATGAATACGAGGGTAAGGAAGATGTAG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAGTCTAAAACACAGTTCAATAATATTTTGTTTAACTTCTGGTTATTTTTTGGAGACTGAAAATGTTTTTTATTAGTGTAAAAAAGGTAAAGAGCGGAGCGACGAACTATCACTGTGGAATCCAAAGACAGGTGTTAGGAGCACCGGAGAAAACATGATAGTTTTAAAATGTACTACTAAATATTGCATCAAATTTTTAGTATCGGTGGGAAATGTTTGAACGTATTGACAATTAACAAAAACATTTATTTTCACCGCTACTGCGGTTTTGCTGTCATGCCGTTGTACATCGCAGTTAACGACCATGCATGTCATTATCATGGAGGATGGATACAGCGTGATCATTAAAAACAAAGTATATCTCTAAACATGAGTTTTTAAGATCACCATCAATGAGGAATGGCACAAATTTTATTACCAGCACATGTTGCCATCGCACATAGACAACCTTACAATTGGTGGCGACGTTTTGGTGAACATCGTCGTCGTTGAAGAACTAGAAGAGGAAGATGAGGAAGGAGATGAATACGAGGGTAAGGAAGATGTAGAAAATTGAGTTGATAAGATGACAAATAATTTTAAAGGTTTTTTTAAATAAATATCTCTTACCGTTGTTTTAAAACCTGTTTGGTCTACCACGGAAGGGCGTAGACCATGAAAAAAATCTAAGGGCTATAAACAATTCTAAGGACCAAAATAACCGACGGGAGCCAAAAACTGTACAATTGATGAATCACTGATACCGTAATTGCTCTAATTGAAGCCTGACCTGTGCGAGCAATTCGAGTTCGATTATCTCAGTTCCAATGAGAGATCTTAAAAAGTTGTCAATTGATAAAACATTGGTGATATCATGATGAATGATTTATATGTTGAAACATTTTTTTCTCCTAGGAACCGAGACAACTGAGCTCAAAAAGCGCGTATTTGGTGGGCACCTAACAAAGCAATTACGGTATGTCTCTAGCAGATCAAATGCGGTATGCATTTTCCTAGCT</canonical>
            <polymorphic>TCAAGTCTAAAACACAGTTCAATAATATTTTGTTTAACTTCTGGTTATTTTTTGGAGACTGAAAATGTTTTTTATTAGTGTAAAAAAGGTAAAGAGCGGAGCGACGAACTATCACTGTGGAATCCAAAGACAGGTGTTAGGAGCACCGGAGAAAACATGATAGTTTTAAAATGTACTACTAAATATTGCATCAAATTTTTAGTATCGGTGGGAAATGTTTGAACGTATTGACAATTAACAAAAACATTTATTTTCACCGCTACTGCGGTTTTGCTGTCATGCCGTTGTACATCGCAGTTAACGACCATGCATGTCATTATCATGGAGGATGGATACAGCGTGATCATTAAAAACAAAGTATATCTCTAAACATGAGTTTTTAAGATCACCATCAATGAGGAATGGCACAAATTTTATTACCAGCACATGTTGCCATCGCACATAGACAACCTTACAATTGGTGGCGACGTTTTGGTGAACATCGTCGTCGTTGAAGAACYAGAAGAGGAAGATGAGGAAGGAGATGAATACGAGGGTAAGGAAGATGTAGAAAATTGAGTTGATAAGATGACAAATAATTTTAAAGGTTTTTTTAAATAAATATCTCTTACCGTTGTTTTAAAACCTGTTTGGTCTACCACGGAAGGGCGTAGACCATGAAAAAAATCTAAGGGCTATAAACAATTCTAAGGACCAAAATAACCGACGGGAGCCAAAAACTGTACAATTGATGAATCACTGATACCGTAATTGCTCTAATTGAAGCCTGACCTGTGCGAGCAATTCGAGTTCGATTATCTCAGTTCCAATGAGAGATCTTAAAAAGTTGTCAATTGATAAAACATTGGTGATATCATGATGAATGATTTATATGTTGAAACATTTTTTTCTCCTAGGAACCGAGACAACTGAGCTCAAAAAGCGCGTATTTGGTGGGCACCTAACAAAGCAATTACGGTATGTCTCTAGCAGATCAAATGCGGTATGCATTTTCCTAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 394 73 29 5</canonical_bands>
                <polymorphic_bands>893 73 29 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTAAGATCACCATCAATGAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTAAAACAACGGTAAGAGATATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTTTAAGATCACCATCAATGAGGAATGGCACAAATTTTATTACCAGCACATGTTGCCATCGCACATAGACAACCTTACAATTGGTGGCGACGTTTTGGTGAACATCGTCGTCGTTGAAGAACTAGAAGAGGAAGATGAGGAAGGAGATGAATACGAGGGTAAGGAAGATGTAGAAAATTGAGTTGATAAGATGACAAATAATTTTAAAGGTTTTTTTAAATAAATATCTCTTACCGTTGTTTTAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTAAGATCACCATCAATGAGGAATGGCACAAATTTTATTACCAGCACATGTTGCCATCGCACATAGACAACCTTACAATTGGTGGCGACGTTTTGGTGAACATCGTCGTCGTTGAAGAACYAGAAGAGGAAGATGAGGAAGGAGATGAATACGAGGGTAAGGAAGATGTAGAAAATTGAGTTGATAAGATGACAAATAATTTTAAAGGTTTTTTTAAATAAATATCTCTTACCGTTGTTTTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6818</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>419684</contig_pos>
        <strand>+</strand>
        <context>TTATTTTTTG[A/G]AGACTGAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCTAAAACACAGTTCAATAATATTTTGTTTAACTTCTGGTTATTTTTTG</left_flank>
        <right_flank>AGACTGAAAATGTTTTTTATTAGTGTAAAAAAGGTAAAGAGCGGAGCGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAATGCAAACGAAAGTAGTGTATTATTGGAAAAACATGCGAGAGACTAGTCGGAGGTAAGAGACGCAGAGAAAACACTTGCGAGGAAGGGAGGAAGTGAGCAAGTGCGCTCCGCCGAGAATAATGGGTGGTGTGAGGATAATTTATGCGAAAATCAAAGAATTCTTGGAGGGAAGCGTTTCTTGAGGGAGATAAGCTCAAAGTGTTTCTCGGAAATCGACAAATTGGGATTTTTTGGAAAAAATCTTTATGAAACTTTTCAAAATAAATCATTGTAATGGAGAATTTATAATTTAAAAATAATTGAGATTTCTCAAAAAAAATCCATTTTCTGAATGAATAAATGGATATGCGACATGTATGCCAATATCTTTTCAGTTTTTTCATTTTTGTTTCGCTATAGAGAAAATCTGCTAAAACAAATTTCATCTTCCATAGGATGTTCAAGTCTAAAACACAGTTCAATAATATTTTGTTTAACTTCTGGTTATTTTTTGGAGACTGAAAATGTTTTTTATTAGTGTAAAAAAGGTAAAGAGCGGAGCGACGAACTATCACTGTGGAATCCAAAGACAGGTGTTAGGAGCACCGGAGAAAACATGATAGTTTTAAAATGTACTACTAAATATTGCATCAAATTTTTAGTATCGGTGGGAAATGTTTGAACGTATTGACAATTAACAAAAACATTTATTTTCACCGCTACTGCGGTTTTGCTGTCATGCCGTTGTACATCGCAGTTAACGACCATGCATGTCATTATCATGGAGGATGGATACAGCGTGATCATTAAAAACAAAGTATATCTCTAAACATGAGTTTTTAAGATCACCATCAATGAGGAATGGCACAAATTTTATTACCAGCACATGTTGCCATCGCACATAGACAACCTTACAATTGGTGGCGACGTTTTGGTGAACATCGTCGTCGTTGAAGAACTAGAAGAGGAAGATGAGGAAGGAGATGAATACGAGGGTAAGGAAGATGTAGAAAAT</canonical>
            <polymorphic>TGAAAATGCAAACGAAAGTAGTGTATTATTGGAAAAACATGCGAGAGACTAGTCGGAGGTAAGAGACGCAGAGAAAACACTTGCGAGGAAGGGAGGAAGTGAGCAAGTGCGCTCCGCCGAGAATAATGGGTGGTGTGAGGATAATTTATGCGAAAATCAAAGAATTCTTGGAGGGAAGCGTTTCTTGAGGGAGATAAGCTCAAAGTGTTTCTCGGAAATCGACAAATTGGGATTTTTTGGAAAAAATCTTTATGAAACTTTTCAAAATAAATCATTGTAATGGAGAATTTATAATTTAAAAATAATTGAGATTTCTCAAAAAAAATCCATTTTCTGAATGAATAAATGGATATGCGACATGTATGCCAATATCTTTTCAGTTTTTTCATTTTTGTTTCGCTATAGAGAAAATCTGCTAAAACAAATTTCATCTTCCATAGGATGTTCAAGTCTAAAACACAGTTCAATAATATTTTGTTTAACTTCTGGTTATTTTTTGRAGACTGAAAATGTTTTTTATTAGTGTAAAAAAGGTAAAGAGCGGAGCGACGAACTATCACTGTGGAATCCAAAGACAGGTGTTAGGAGCACCGGAGAAAACATGATAGTTTTAAAATGTACTACTAAATATTGCATCAAATTTTTAGTATCGGTGGGAAATGTTTGAACGTATTGACAATTAACAAAAACATTTATTTTCACCGCTACTGCGGTTTTGCTGTCATGCCGTTGTACATCGCAGTTAACGACCATGCATGTCATTATCATGGAGGATGGATACAGCGTGATCATTAAAAACAAAGTATATCTCTAAACATGAGTTTTTAAGATCACCATCAATGAGGAATGGCACAAATTTTATTACCAGCACATGTTGCCATCGCACATAGACAACCTTACAATTGGTGGCGACGTTTTGGTGAACATCGTCGTCGTTGAAGAACTAGAAGAGGAAGATGAGGAAGGAGATGAATACGAGGGTAAGGAAGATGTAGAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCCATAGGATGTTCAAGTCTA</pcr_primer_p1>
		<pcr_primer_p2>AATTGTCAATACGTTCAAACATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCCATAGGATGTTCAAGTCTAAAACACAGTTCAATAATATTTTGTTTAACTTCTGGTTATTTTTTGGAGACTGAAAATGTTTTTTATTAGTGTAAAAAAGGTAAAGAGCGGAGCGACGAACTATCACTGTGGAATCCAAAGACAGGTGTTAGGAGCACCGGAGAAAACATGATAGTTTTAAAATGTACTACTAAATATTGCATCAAATTTTTAGTATCGGTGGGAAATGTTTGAACGTATTGACAATT</canonical_amplicon>
		<polymorphic_amplicon>CTTCCATAGGATGTTCAAGTCTAAAACACAGTTCAATAATATTTTGTTTAACTTCTGGTTATTTTTTGRAGACTGAAAATGTTTTTTATTAGTGTAAAAAAGGTAAAGAGCGGAGCGACGAACTATCACTGTGGAATCCAAAGACAGGTGTTAGGAGCACCGGAGAAAACATGATAGTTTTAAAATGTACTACTAAATATTGCATCAAATTTTTAGTATCGGTGGGAAATGTTTGAACGTATTGACAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6819</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>461580</contig_pos>
        <strand>+</strand>
        <context>GATAAATGAC[G/T]TTTCAACGCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCCAAGAACAAAAACGAAGGAGATCGAAGTCGTCGGGTTGATAAATGAC</left_flank>
        <right_flank>TTTCAACGCTTTGGTCGGTTAAACTTACATTTACAGGCTTTACGATGAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTGGCCTTTTGTCCACTCTCACTCGTTTTCTTCTTCATCTCACTCAATTCCCAATTTTGGCAACAAACACTGCCCAAAATTCAATTTCCCTCCTCCTCCACCCTTTGTTGGCTTCTAGAAGTTTTGAAGGATGTGTAAAATGGGAAAAAGAAGAAGAAGAAACAATTGGAAGCAAAGTGCTATACAATCGGTGGTGGTGGTCAATCGAGGAGCCCGGCAGGAGAAAACGGGAAAGATGTGTTTCAATTACGTAACATTGGTGCTTGAGAAGGGTGCTTAAATTGGGACCCCCTTCTCTTTTTCTTTTAGCCCCCAGAAATTAGTCGCTTCATGACCACCACAGGGATAAAGGTTCTTGACATGGGCCACTTCACTAGATCCCCACTGTGTTTTTAGGATATTTGACATTGTTTGGGTTAGGTCATACAGAAAGAAGGTCCCAAGGGCTCCAAGAACAAAAACGAAGGAGATCGAAGTCGTCGGGTTGATAAATGACGTTTCAACGCTTTGGTCGGTTAAACTTACATTTACAGGCTTTACGATGAGTCATTGGTAGCGAAGTGTCTCTAACGAATCCAGGTTTGCACAAGTGACAATTTCTTCCTGCTGTGTTGTGTCTACAGTTTAAGCAGACACCTCCCGATCTGAAATTTCAAACTTTTTTTCCCCTATTCCGTCTACCATTTCAATCTAACCGGTTTCCACTCAATCTGAAGAGCTCAGCGTCGAATCGGCATCTCTTTGCGTGTTGGTTGCAGTTGCAAGCTGGAATTTTCAATTCATCATTCAATAATCCCGAGGCTTCGGTTGATTGTGAGCGCCTCTTCGTATTCGTCCAGTTTATTTACAACCGGCGGGCTATTAATCTAGCAGTAATTCATGCAAGCAGCACATGTCTATGTATGCCTACCGTAGGAATGTTCATTCCCATCGCACATCTATTAAAATAGGCCGCTTCTACTACATATGGCGCTTCTGACAATCACACAGAACCTTT</canonical>
            <polymorphic>TTCTTGGCCTTTTGTCCACTCTCACTCGTTTTCTTCTTCATCTCACTCAATTCCCAATTTTGGCAACAAACACTGCCCAAAATTCAATTTCCCTCCTCCTCCACCCTTTGTTGGCTTCTAGAAGTTTTGAAGGATGTGTAAAATGGGAAAAAGAAGAAGAAGAAACAATTGGAAGCAAAGTGCTATACAATCGGTGGTGGTGGTCAATCGAGGAGCCCGGCAGGAGAAAACGGGAAAGATGTGTTTCAATTACGTAACATTGGTGCTTGAGAAGGGTGCTTAAATTGGGACCCCCTTCTCTTTTTCTTTTAGCCCCCAGAAATTAGTCGCTTCATGACCACCACAGGGATAAAGGTTCTTGACATGGGCCACTTCACTAGATCCCCACTGTGTTTTTAGGATATTTGACATTGTTTGGGTTAGGTCATACAGAAAGAAGGTCCCAAGGGCTCCAAGAACAAAAACGAAGGAGATCGAAGTCGTCGGGTTGATAAATGACKTTTCAACGCTTTGGTCGGTTAAACTTACATTTACAGGCTTTACGATGAGTCATTGGTAGCGAAGTGTCTCTAACGAATCCAGGTTTGCACAAGTGACAATTTCTTCCTGCTGTGTTGTGTCTACAGTTTAAGCAGACACCTCCCGATCTGAAATTTCAAACTTTTTTTCCCCTATTCCGTCTACCATTTCAATCTAACCGGTTTCCACTCAATCTGAAGAGCTCAGCGTCGAATCGGCATCTCTTTGCGTGTTGGTTGCAGTTGCAAGCTGGAATTTTCAATTCATCATTCAATAATCCCGAGGCTTCGGTTGATTGTGAGCGCCTCTTCGTATTCGTCCAGTTTATTTACAACCGGCGGGCTATTAATCTAGCAGTAATTCATGCAAGCAGCACATGTCTATGTATGCCTACCGTAGGAATGTTCATTCCCATCGCACATCTATTAAAATAGGCCGCTTCTACTACATATGGCGCTTCTGACAATCACACAGAACCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>502 252 246</canonical_bands>
                <polymorphic_bands>748 252</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACTGTGTTTTTAGGATATTTG</pcr_primer_p1>
		<pcr_primer_p2>TGCTTAAACTGTAGACACAACAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCACTGTGTTTTTAGGATATTTGACATTGTTTGGGTTAGGTCATACAGAAAGAAGGTCCCAAGGGCTCCAAGAACAAAAACGAAGGAGATCGAAGTCGTCGGGTTGATAAATGACGTTTCAACGCTTTGGTCGGTTAAACTTACATTTACAGGCTTTACGATGAGTCATTGGTAGCGAAGTGTCTCTAACGAATCCAGGTTTGCACAAGTGACAATTTCTTCCTGCTGTGTTGTGTCTACAGTTTAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACTGTGTTTTTAGGATATTTGACATTGTTTGGGTTAGGTCATACAGAAAGAAGGTCCCAAGGGCTCCAAGAACAAAAACGAAGGAGATCGAAGTCGTCGGGTTGATAAATGACKTTTCAACGCTTTGGTCGGTTAAACTTACATTTACAGGCTTTACGATGAGTCATTGGTAGCGAAGTGTCTCTAACGAATCCAGGTTTGCACAAGTGACAATTTCTTCCTGCTGTGTTGTGTCTACAGTTTAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6820</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>463783</contig_pos>
        <strand>+</strand>
        <context>AATCGGTGAG[A/G]AGAGAAGCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAGTGGAAACCCAGCACGTCATGTTCCCAATCGAGTTCAAATCGGTGAG</left_flank>
        <right_flank>AGAGAAGCTGGATGGGATAGAAGAGGATTGCGAGCGTCACAAGTGTCACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTTCAGCCTAAAGTCTTTGTTTTTATAATACAGTACTCTTTTTCTATGGATACCTGATCTGGGCTTAGTCTAGAGAAGACCACCTTGATATCAGTGGCTGTGACCCAATCCTGAAGTACCGGCGAGTTCTCAAAGTTTTGGGCAGATGGTCGATTCTCCAGGAATGGGAACGCAACACGGTTTCCACCTGGCCCCATAATGTGTGAAGCTGTACAGACGGCTTCTTGCTCGTTTGACTTGGTGATACTAACATCCGGTTCCCGGCCAAAAATTCGTCGGCATTCAGAAGAGTAAAATTGGAAGGGAGTCCATGTTTTTCCAAAGTCGGCCGATTTGTAAAGTGCCATCGAATCCGGGAGACGAGAACAAAAGTGCATTGAGACGTAAGTGAGCTCGAACTTTTTACCGAGTGACAAGGTGAGTGACACATTTTGTGGGCTCAAACTTGGAGTGGAAACCCAGCACGTCATGTTCCCAATCGAGTTCAAATCGGTGAGGAGAGAAGCTGGATGGGATAGAAGAGGATTGCGAGCGTCACAAGTGTCACACTGTTCACGAATAATTCCATCTGGACCTTCTTTGACAGTACAGAATCTAAAAACAACAGCTAAATATCTTTTTTCTCTATTTTTCATATTGACCACATAGCTGTAGCTGTCCAAGCACATTTTTCAATCTAATGCATACTTGTAGCTTGCCCAATACAATCTTAATCAAAAAAGGCAATTTTCAAGACGGCGAGAAAGGGGTCTACAATGTTTGTTATAGAGAAAACGGAGAAACTAAACCTTATGGAAACTAAAAAAAAAAAGGAAATCCAATTAGAGTTTTTTTTCGAAGATGAAAGGTTCTGGGCAAGTTGAAGGAAAAGAAGAAACAAAAAAGCAAAATCAAGTGAGTGTAATCATGTTAAGGAAGAGAGAAAGGTAAATAATCAATCAGTTGGAAGAATAGACAAAAAATGAAATAACGAGATAAAAAAGAAAACATTTACTTAC</canonical>
            <polymorphic>TAGTTCAGCCTAAAGTCTTTGTTTTTATAATACAGTACTCTTTTTCTATGGATACCTGATCTGGGCTTAGTCTAGAGAAGACCACCTTGATATCAGTGGCTGTGACCCAATCCTGAAGTACCGGCGAGTTCTCAAAGTTTTGGGCAGATGGTCGATTCTCCAGGAATGGGAACGCAACACGGTTTCCACCTGGCCCCATAATGTGTGAAGCTGTACAGACGGCTTCTTGCTCGTTTGACTTGGTGATACTAACATCCGGTTCCCGGCCAAAAATTCGTCGGCATTCAGAAGAGTAAAATTGGAAGGGAGTCCATGTTTTTCCAAAGTCGGCCGATTTGTAAAGTGCCATCGAATCCGGGAGACGAGAACAAAAGTGCATTGAGACGTAAGTGAGCTCGAACTTTTTACCGAGTGACAAGGTGAGTGACACATTTTGTGGGCTCAAACTTGGAGTGGAAACCCAGCACGTCATGTTCCCAATCGAGTTCAAATCGGTGAGRAGAGAAGCTGGATGGGATAGAAGAGGATTGCGAGCGTCACAAGTGTCACACTGTTCACGAATAATTCCATCTGGACCTTCTTTGACAGTACAGAATCTAAAAACAACAGCTAAATATCTTTTTTCTCTATTTTTCATATTGACCACATAGCTGTAGCTGTCCAAGCACATTTTTCAATCTAATGCATACTTGTAGCTTGCCCAATACAATCTTAATCAAAAAAGGCAATTTTCAAGACGGCGAGAAAGGGGTCTACAATGTTTGTTATAGAGAAAACGGAGAAACTAAACCTTATGGAAACTAAAAAAAAAAAGGAAATCCAATTAGAGTTTTTTTTCGAAGATGAAAGGTTCTGGGCAAGTTGAAGGAAAAGAAGAAACAAAAAAGCAAAATCAAGTGAGTGTAATCATGTTAAGGAAGAGAGAAAGGTAAATAATCAATCAGTTGGAAGAATAGACAAAAAATGAAATAACGAGATAAAAAAGAAAACATTTACTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACCGAGTGACAAGGTGAGT</pcr_primer_p1>
		<pcr_primer_p2>TACAGCTATGTGGTCAATATGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACCGAGTGACAAGGTGAGTGACACATTTTGTGGGCTCAAACTTGGAGTGGAAACCCAGCACGTCATGTTCCCAATCGAGTTCAAATCGGTGAGGAGAGAAGCTGGATGGGATAGAAGAGGATTGCGAGCGTCACAAGTGTCACACTGTTCACGAATAATTCCATCTGGACCTTCTTTGACAGTACAGAATCTAAAAACAACAGCTAAATATCTTTTTTCTCTATTTTTCATATTGACCACATAGCTGTA</canonical_amplicon>
		<polymorphic_amplicon>TACCGAGTGACAAGGTGAGTGACACATTTTGTGGGCTCAAACTTGGAGTGGAAACCCAGCACGTCATGTTCCCAATCGAGTTCAAATCGGTGAGRAGAGAAGCTGGATGGGATAGAAGAGGATTGCGAGCGTCACAAGTGTCACACTGTTCACGAATAATTCCATCTGGACCTTCTTTGACAGTACAGAATCTAAAAACAACAGCTAAATATCTTTTTTCTCTATTTTTCATATTGACCACATAGCTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6821</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>475972</contig_pos>
        <strand></strand>
        <context>ATCAAATAGA[T/C]TTTATTTAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAGAAAACATTTCTTTTTTATGCCTGATAGTTTTTTTTAGATCAAATAGA</left_flank>
        <right_flank>TTTATTTAAATCCAACTTTTTCTTAAATAACGGTCATCCTCAATTTCATT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGCAACCGCGAAAGTAGTTCCACGGCTAATCGAAATACCACCACCTGTTGATCCGGAAAACCAGAATAGACTTTTTTTGTGAAGCTTTTGCACATCTGGAATGATGGTGTCGTTAAATATCACAAGATGTTGAAAGATCTGGAATTGTTTCTGAACAGGAAGTGAAGTCAGAGAAGCATTCCACATGGAAAAACAATCTTATCAATTACCAAACTGTCTTTATACGTTCATACAAATGAATAATTTCATTATATTGTTAACGAACACTGTTTCATTCCTCCGCCATAACCTGATATAGTGTAACAGAATATGCCAATTGGCGGCATTTTCACGGGCATCAAAAGGGGAAAAAAGAAACGGGGTGGGAGGTGGGTGGATCATGTTTTTTGACCATATACAACAAACGGTGGATATATCTAGTAACGGCGTTCAGTGCCTTTTGATCAGTTAGAAAACATTTCTTTTTTATGCCTGATAGTTTTTTTTAGATCAAATAGATTTTATTTAAATCCAACTTTTTCTTAAATAACGGTCATCCTCAATTTCATTTTGTTACGTGAAGCTAAACCACTCTACATAAAAATCGTGGACTTCACCAAAGCGAAAAATTGCGGCTTGTTGCCTTCTGCTGGTAGAAATGAACATGAGGGACTGGAAAAACACCTGTCGAGATAGTCATCCCGAGAAGGAACCAGCTAATGGATTTCACGCTCGTGGTCATCATTCCGTCTAGCAGTATCTCTTTTTTGGTCGATCACCACATCCCTTTCCGCCTGCCATTCTACAAATGTTTCTTTTTCATTTTCTTCCCTTTTTTTTCTTGGGACTTGTTTAGGCGGCATCCTTTCTTTTGATGACTTGAAAATGACTTCACGAAAGGTATAAATAAAACAAAACGGCAAAGAATTGGGTGATGAGATTCTTCTTTGACGAGTTTTCTGGAATAGAGAGACGTGGAGATTATATTCGGATTGGTTGGAACTTGTTCCATGAATTATA</canonical>
            <polymorphic>TCGCAACCGCGAAAGTAGTTCCACGGCTAATCGAAATACCACCACCTGTTGATCCGGAAAACCAGAATAGACTTTTTTTGTGAAGCTTTTGCACATCTGGAATGATGGTGTCGTTAAATATCACAAGATGTTGAAAGATCTGGAATTGTTTCTGAACAGGAAGTGAAGTCAGAGAAGCATTCCACATGGAAAAACAATCTTATCAATTACCAAACTGTCTTTATACGTTCATACAAATGAATAATTTCATTATATTGTTAACGAACACTGTTTCATTCCTCCGCCATAACCTGATATAGTGTAACAGAATATGCCAATTGGCGGCATTTTCACGGGCATCAAAAGGGGAAAAAAGAAACGGGGTGGGAGGTGGGTGGATCATGTTTTTTGACCATATACAACAAACGGTGGATATATCTAGTAACGGCGTTCAGTGCCTTTTGATCAGTTAGAAAACATTTCTTTTTTATGCCTGATAGTTTTTTTTAGATCAAATAGAYTTTATTTAAATCCAACTTTTTCTTAAATAACGGTCATCCTCAATTTCATTTTGTTACGTGAAGCTAAACCACTCTACATAAAAATCGTGGACTTCACCAAAGCGAAAAATTGCGGCTTGTTGCCTTCTGCTGGTAGAAATGAACATGAGGGACTGGAAAAACACCTGTCGAGATAGTCATCCCGAGAAGGAACCAGCTAATGGATTTCACGCTCGTGGTCATCATTCCGTCTAGCAGTATCTCTTTTTTGGTCGATCACCACATCCCTTTCCGCCTGCCATTCTACAAATGTTTCTTTTTCATTTTCTTCCCTTTTTTTTCTTGGGACTTGTTTAGGCGGCATCCTTTCTTTTGATGACTTGAAAATGACTTCACGAAAGGTATAAATAAAACAAAACGGCAAAGAATTGGGTGATGAGATTCTTCTTTGACGAGTTTTCTGGAATAGAGAGACGTGGAGATTATATTCGGATTGGTTGGAACTTGTTCCATGAATTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGCCTTTTGATCAGTTAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATGACTATCTCGACAGGTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGTGCCTTTTGATCAGTTAGAAAACATTTCTTTTTTATGCCTGATAGTTTTTTTTAGATCAAATAGATTTTATTTAAATCCAACTTTTTCTTAAATAACGGTCATCCTCAATTTCATTTTGTTACGTGAAGCTAAACCACTCTACATAAAAATCGTGGACTTCACCAAAGCGAAAAATTGCGGCTTGTTGCCTTCTGCTGGTAGAAATGAACATGAGGGACTGGAAAAACACCTGTCGAGATAGTCAT</canonical_amplicon>
		<polymorphic_amplicon>AGTGCCTTTTGATCAGTTAGAAAACATTTCTTTTTTATGCCTGATAGTTTTTTTTAGATCAAATAGAYTTTATTTAAATCCAACTTTTTCTTAAATAACGGTCATCCTCAATTTCATTTTGTTACGTGAAGCTAAACCACTCTACATAAAAATCGTGGACTTCACCAAAGCGAAAAATTGCGGCTTGTTGCCTTCTGCTGGTAGAAATGAACATGAGGGACTGGAAAAACACCTGTCGAGATAGTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6822</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>475888</contig_pos>
        <strand></strand>
        <context>CGGTGGATAT[A/G]TCTAGTAACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAGGTGGGTGGATCATGTTTTTTGACCATATACAACAAACGGTGGATAT</left_flank>
        <right_flank>TCTAGTAACGGCGTTCAGTGCCTTTTGATCAGTTAGAAAACATTTCTTTT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAACTGAAAGTATCTACACTTTACTCCATTTAGTTTCCTACAAAGTGGGTTTGTTGAGGAAGTGAATTCTAATGAAGAGAAAGTCGCAACCGCGAAAGTAGTTCCACGGCTAATCGAAATACCACCACCTGTTGATCCGGAAAACCAGAATAGACTTTTTTTGTGAAGCTTTTGCACATCTGGAATGATGGTGTCGTTAAATATCACAAGATGTTGAAAGATCTGGAATTGTTTCTGAACAGGAAGTGAAGTCAGAGAAGCATTCCACATGGAAAAACAATCTTATCAATTACCAAACTGTCTTTATACGTTCATACAAATGAATAATTTCATTATATTGTTAACGAACACTGTTTCATTCCTCCGCCATAACCTGATATAGTGTAACAGAATATGCCAATTGGCGGCATTTTCACGGGCATCAAAAGGGGAAAAAAGAAACGGGGTGGGAGGTGGGTGGATCATGTTTTTTGACCATATACAACAAACGGTGGATATATCTAGTAACGGCGTTCAGTGCCTTTTGATCAGTTAGAAAACATTTCTTTTTTATGCCTGATAGTTTTTTTTAGATCAAATAGATTTTATTTAAATCCAACTTTTTCTTAAATAACGGTCATCCTCAATTTCATTTTGTTACGTGAAGCTAAACCACTCTACATAAAAATCGTGGACTTCACCAAAGCGAAAAATTGCGGCTTGTTGCCTTCTGCTGGTAGAAATGAACATGAGGGACTGGAAAAACACCTGTCGAGATAGTCATCCCGAGAAGGAACCAGCTAATGGATTTCACGCTCGTGGTCATCATTCCGTCTAGCAGTATCTCTTTTTTGGTCGATCACCACATCCCTTTCCGCCTGCCATTCTACAAATGTTTCTTTTTCATTTTCTTCCCTTTTTTTTCTTGGGACTTGTTTAGGCGGCATCCTTTCTTTTGATGACTTGAAAATGACTTCACGAAAGGTATAAATAAAACAAAACGGCAAAGAATTGGGTGAT</canonical>
            <polymorphic>CAAACTGAAAGTATCTACACTTTACTCCATTTAGTTTCCTACAAAGTGGGTTTGTTGAGGAAGTGAATTCTAATGAAGAGAAAGTCGCAACCGCGAAAGTAGTTCCACGGCTAATCGAAATACCACCACCTGTTGATCCGGAAAACCAGAATAGACTTTTTTTGTGAAGCTTTTGCACATCTGGAATGATGGTGTCGTTAAATATCACAAGATGTTGAAAGATCTGGAATTGTTTCTGAACAGGAAGTGAAGTCAGAGAAGCATTCCACATGGAAAAACAATCTTATCAATTACCAAACTGTCTTTATACGTTCATACAAATGAATAATTTCATTATATTGTTAACGAACACTGTTTCATTCCTCCGCCATAACCTGATATAGTGTAACAGAATATGCCAATTGGCGGCATTTTCACGGGCATCAAAAGGGGAAAAAAGAAACGGGGTGGGAGGTGGGTGGATCATGTTTTTTGACCATATACAACAAACGGTGGATATRTCTAGTAACGGCGTTCAGTGCCTTTTGATCAGTTAGAAAACATTTCTTTTTTATGCCTGATAGTTTTTTTTAGATCAAATAGATTTTATTTAAATCCAACTTTTTCTTAAATAACGGTCATCCTCAATTTCATTTTGTTACGTGAAGCTAAACCACTCTACATAAAAATCGTGGACTTCACCAAAGCGAAAAATTGCGGCTTGTTGCCTTCTGCTGGTAGAAATGAACATGAGGGACTGGAAAAACACCTGTCGAGATAGTCATCCCGAGAAGGAACCAGCTAATGGATTTCACGCTCGTGGTCATCATTCCGTCTAGCAGTATCTCTTTTTTGGTCGATCACCACATCCCTTTCCGCCTGCCATTCTACAAATGTTTCTTTTTCATTTTCTTCCCTTTTTTTTCTTGGGACTTGTTTAGGCGGCATCCTTTCTTTTGATGACTTGAAAATGACTTCACGAAAGGTATAAATAAAACAAAACGGCAAAGAATTGGGTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATAACCTGATATAGTGTAACAGAA</pcr_primer_p1>
		<pcr_primer_p2>GACCGTTATTTAAGAAAAAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CCATAACCTGATATAGTGTAACAGAATATGCCAATTGGCGGCATTTTCACGGGCATCAAAAGGGGAAAAAAGAAACGGGGTGGGAGGTGGGTGGATCATGTTTTTTGACCATATACAACAAACGGTGGATATATCTAGTAACGGCGTTCAGTGCCTTTTGATCAGTTAGAAAACATTTCTTTTTTATGCCTGATAGTTTTTTTTAGATCAAATAGATTTTATTTAAATCCAACTTTTTCTTAAATAACGGTC</canonical_amplicon>
		<polymorphic_amplicon>CCATAACCTGATATAGTGTAACAGAATATGCCAATTGGCGGCATTTTCACGGGCATCAAAAGGGGAAAAAAGAAACGGGGTGGGAGGTGGGTGGATCATGTTTTTTGACCATATACAACAAACGGTGGATATRTCTAGTAACGGCGTTCAGTGCCTTTTGATCAGTTAGAAAACATTTCTTTTTTATGCCTGATAGTTTTTTTTAGATCAAATAGATTTTATTTAAATCCAACTTTTTCTTAAATAACGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6824</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>528778</contig_pos>
        <strand>+</strand>
        <context>ACTTTGTGTG[A/T]GCGTCAATTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGCACCAAAGAAAGCTCGAATGGAATCGGAAGAATGAACAACTTTGTGTG</left_flank>
        <right_flank>GCGTCAATTATCAAATGATTTGTACCACTATGATTATTAACTTTGCAGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCGTCGCATTGCAAACGGAGAAGGTGGAACATGTCACTAAACTGAAAATACTAACAGAGTCTGTCTGTGAAGCTGAGGTAGAGTTTTTCAATAAAGACGATGAATTTAAATTATCCAGAAGACTCTATGAAGAATGCCTGGACGATGGGAAAGTTTATTTCGAGTCGGAATATTATGCCAGTCTCGTGACAAATACCGAAAAACAAGTAGAACTGGCAAAGAAACTTGAACAAGGTCATGAAGAAGTTCTGCAAAAAACTGAGGATCTCAATATGCAATAAGAAGCGATGGATGAGATAATAAAGAAGATAACCGAAATCGAAAAAAACCTTCGTGAAAAACCAGGCTGAGCTAATGAAATTGGAGAAAAATTGGTTGTTCATCGAAAAAGTACAAAGTTCTTTGGAATTCTTAATATGCCGTCTGTGGAGCCTTCTGAGGATGAGACTGCACCAAAGAAAGCTCGAATGGAATCGGAAGAATGAACAACTTTGTGTGTGCGTCAATTATCAAATGATTTGTACCACTATGATTATTAACTTTGCAGGATTTGCGGTATCAAATCATTTACGTATTTCCCAAAACCCGACTTCAGCAATCAAATCCAAACTCAAATCATAAATTTTTATCGGTTTTCTCATTTTTCTGTATTTCTGAATACCATGTCAACCACATCTTATTAAGATAATTAGATTTTTGTTAAAATTGTCTTTCCCATCTTTCTCCTTCCTCAAAATTCACGTTTTCCCTTCGCAATGCAATTTTTTTCTAATTTCTACCAGTCGAAAATTTTTTTAATGTTCAGCTGAATTTTTAACACTGTCTTTTCAACTGAGTTTTTCTTTTGTCAATGATAATTTTTGAGGCTCGCAAGCTGTTTTAAAACTATGATGTTTCAGCATCACACAACGGAAATTTCAATTTGTAGCGGAACTTTCAAAACTTTTGTTTACCACTTCAGTATAATTCTTTTCTCCTTATCAGTCTCCATTTTTTTTC</canonical>
            <polymorphic>GCCGTCGCATTGCAAACGGAGAAGGTGGAACATGTCACTAAACTGAAAATACTAACAGAGTCTGTCTGTGAAGCTGAGGTAGAGTTTTTCAATAAAGACGATGAATTTAAATTATCCAGAAGACTCTATGAAGAATGCCTGGACGATGGGAAAGTTTATTTCGAGTCGGAATATTATGCCAGTCTCGTGACAAATACCGAAAAACAAGTAGAACTGGCAAAGAAACTTGAACAAGGTCATGAAGAAGTTCTGCAAAAAACTGAGGATCTCAATATGCAATAAGAAGCGATGGATGAGATAATAAAGAAGATAACCGAAATCGAAAAAAACCTTCGTGAAAAACCAGGCTGAGCTAATGAAATTGGAGAAAAATTGGTTGTTCATCGAAAAAGTACAAAGTTCTTTGGAATTCTTAATATGCCGTCTGTGGAGCCTTCTGAGGATGAGACTGCACCAAAGAAAGCTCGAATGGAATCGGAAGAATGAACAACTTTGTGTGWGCGTCAATTATCAAATGATTTGTACCACTATGATTATTAACTTTGCAGGATTTGCGGTATCAAATCATTTACGTATTTCCCAAAACCCGACTTCAGCAATCAAATCCAAACTCAAATCATAAATTTTTATCGGTTTTCTCATTTTTCTGTATTTCTGAATACCATGTCAACCACATCTTATTAAGATAATTAGATTTTTGTTAAAATTGTCTTTCCCATCTTTCTCCTTCCTCAAAATTCACGTTTTCCCTTCGCAATGCAATTTTTTTCTAATTTCTACCAGTCGAAAATTTTTTTAATGTTCAGCTGAATTTTTAACACTGTCTTTTCAACTGAGTTTTTCTTTTGTCAATGATAATTTTTGAGGCTCGCAAGCTGTTTTAAAACTATGATGTTTCAGCATCACACAACGGAAATTTCAATTTGTAGCGGAACTTTCAAAACTTTTGTTTACCACTTCAGTATAATTCTTTTCTCCTTATCAGTCTCCATTTTTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>148 146 119 92 85 79 68 49 44 44 33 27 26 24 10 2 2 2</canonical_bands>
                <polymorphic_bands>148 146 119 92 85 79 68 49 44 44 33 28 27 24 10 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCATCGAAAAAGTACAAAGTTC</pcr_primer_p1>
		<pcr_primer_p2>TATGATTTGAGTTTGGATTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTCATCGAAAAAGTACAAAGTTCTTTGGAATTCTTAATATGCCGTCTGTGGAGCCTTCTGAGGATGAGACTGCACCAAAGAAAGCTCGAATGGAATCGGAAGAATGAACAACTTTGTGTGTGCGTCAATTATCAAATGATTTGTACCACTATGATTATTAACTTTGCAGGATTTGCGGTATCAAATCATTTACGTATTTCCCAAAACCCGACTTCAGCAATCAAATCCAAACTCAAATCATA</canonical_amplicon>
		<polymorphic_amplicon>TTCATCGAAAAAGTACAAAGTTCTTTGGAATTCTTAATATGCCGTCTGTGGAGCCTTCTGAGGATGAGACTGCACCAAAGAAAGCTCGAATGGAATCGGAAGAATGAACAACTTTGTGTGWGCGTCAATTATCAAATGATTTGTACCACTATGATTATTAACTTTGCAGGATTTGCGGTATCAAATCATTTACGTATTTCCCAAAACCCGACTTCAGCAATCAAATCCAAACTCAAATCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6825</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>528803</contig_pos>
        <strand>+</strand>
        <context>ATGATTTGTA[C/T]CACTATGATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGGAAGAATGAACAACTTTGTGTGTGCGTCAATTATCAAATGATTTGTA</left_flank>
        <right_flank>CACTATGATTATTAACTTTGCAGGATTTGCGGTATCAAATCATTTACGTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAACATGTCACTAAACTGAAAATACTAACAGAGTCTGTCTGTGAAGCTGAGGTAGAGTTTTTCAATAAAGACGATGAATTTAAATTATCCAGAAGACTCTATGAAGAATGCCTGGACGATGGGAAAGTTTATTTCGAGTCGGAATATTATGCCAGTCTCGTGACAAATACCGAAAAACAAGTAGAACTGGCAAAGAAACTTGAACAAGGTCATGAAGAAGTTCTGCAAAAAACTGAGGATCTCAATATGCAATAAGAAGCGATGGATGAGATAATAAAGAAGATAACCGAAATCGAAAAAAACCTTCGTGAAAAACCAGGCTGAGCTAATGAAATTGGAGAAAAATTGGTTGTTCATCGAAAAAGTACAAAGTTCTTTGGAATTCTTAATATGCCGTCTGTGGAGCCTTCTGAGGATGAGACTGCACCAAAGAAAGCTCGAATGGAATCGGAAGAATGAACAACTTTGTGTGTGCGTCAATTATCAAATGATTTGTACCACTATGATTATTAACTTTGCAGGATTTGCGGTATCAAATCATTTACGTATTTCCCAAAACCCGACTTCAGCAATCAAATCCAAACTCAAATCATAAATTTTTATCGGTTTTCTCATTTTTCTGTATTTCTGAATACCATGTCAACCACATCTTATTAAGATAATTAGATTTTTGTTAAAATTGTCTTTCCCATCTTTCTCCTTCCTCAAAATTCACGTTTTCCCTTCGCAATGCAATTTTTTTCTAATTTCTACCAGTCGAAAATTTTTTTAATGTTCAGCTGAATTTTTAACACTGTCTTTTCAACTGAGTTTTTCTTTTGTCAATGATAATTTTTGAGGCTCGCAAGCTGTTTTAAAACTATGATGTTTCAGCATCACACAACGGAAATTTCAATTTGTAGCGGAACTTTCAAAACTTTTGTTTACCACTTCAGTATAATTCTTTTCTCCTTATCAGTCTCCATTTTTTTTCCTCAGCTTGCTAACCCTAAAAATCG</canonical>
            <polymorphic>TGGAACATGTCACTAAACTGAAAATACTAACAGAGTCTGTCTGTGAAGCTGAGGTAGAGTTTTTCAATAAAGACGATGAATTTAAATTATCCAGAAGACTCTATGAAGAATGCCTGGACGATGGGAAAGTTTATTTCGAGTCGGAATATTATGCCAGTCTCGTGACAAATACCGAAAAACAAGTAGAACTGGCAAAGAAACTTGAACAAGGTCATGAAGAAGTTCTGCAAAAAACTGAGGATCTCAATATGCAATAAGAAGCGATGGATGAGATAATAAAGAAGATAACCGAAATCGAAAAAAACCTTCGTGAAAAACCAGGCTGAGCTAATGAAATTGGAGAAAAATTGGTTGTTCATCGAAAAAGTACAAAGTTCTTTGGAATTCTTAATATGCCGTCTGTGGAGCCTTCTGAGGATGAGACTGCACCAAAGAAAGCTCGAATGGAATCGGAAGAATGAACAACTTTGTGTGTGCGTCAATTATCAAATGATTTGTAYCACTATGATTATTAACTTTGCAGGATTTGCGGTATCAAATCATTTACGTATTTCCCAAAACCCGACTTCAGCAATCAAATCCAAACTCAAATCATAAATTTTTATCGGTTTTCTCATTTTTCTGTATTTCTGAATACCATGTCAACCACATCTTATTAAGATAATTAGATTTTTGTTAAAATTGTCTTTCCCATCTTTCTCCTTCCTCAAAATTCACGTTTTCCCTTCGCAATGCAATTTTTTTCTAATTTCTACCAGTCGAAAATTTTTTTAATGTTCAGCTGAATTTTTAACACTGTCTTTTCAACTGAGTTTTTCTTTTGTCAATGATAATTTTTGAGGCTCGCAAGCTGTTTTAAAACTATGATGTTTCAGCATCACACAACGGAAATTTCAATTTGTAGCGGAACTTTCAAAACTTTTGTTTACCACTTCAGTATAATTCTTTTCTCCTTATCAGTCTCCATTTTTTTTCCTCAGCTTGCTAACCCTAAAAATCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 368 130</canonical_bands>
                <polymorphic_bands>632 368</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCATCGAAAAAGTACAAAGTTC</pcr_primer_p1>
		<pcr_primer_p2>TATGATTTGAGTTTGGATTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTCATCGAAAAAGTACAAAGTTCTTTGGAATTCTTAATATGCCGTCTGTGGAGCCTTCTGAGGATGAGACTGCACCAAAGAAAGCTCGAATGGAATCGGAAGAATGAACAACTTTGTGTGTGCGTCAATTATCAAATGATTTGTACCACTATGATTATTAACTTTGCAGGATTTGCGGTATCAAATCATTTACGTATTTCCCAAAACCCGACTTCAGCAATCAAATCCAAACTCAAATCATA</canonical_amplicon>
		<polymorphic_amplicon>TTCATCGAAAAAGTACAAAGTTCTTTGGAATTCTTAATATGCCGTCTGTGGAGCCTTCTGAGGATGAGACTGCACCAAAGAAAGCTCGAATGGAATCGGAAGAATGAACAACTTTGTGTGTGCGTCAATTATCAAATGATTTGTAYCACTATGATTATTAACTTTGCAGGATTTGCGGTATCAAATCATTTACGTATTTCCCAAAACCCGACTTCAGCAATCAAATCCAAACTCAAATCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6826</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>528995</contig_pos>
        <strand>+</strand>
        <context>TTGTCTTTCC[C/T]ATCTTTCTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAACCACATCTTATTAAGATAATTAGATTTTTGTTAAAATTGTCTTTCC</left_flank>
        <right_flank>ATCTTTCTCCTTCCTCAAAATTCACGTTTTCCCTTCGCAATGCAATTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAGAAACTTGAACAAGGTCATGAAGAAGTTCTGCAAAAAACTGAGGATCTCAATATGCAATAAGAAGCGATGGATGAGATAATAAAGAAGATAACCGAAATCGAAAAAAACCTTCGTGAAAAACCAGGCTGAGCTAATGAAATTGGAGAAAAATTGGTTGTTCATCGAAAAAGTACAAAGTTCTTTGGAATTCTTAATATGCCGTCTGTGGAGCCTTCTGAGGATGAGACTGCACCAAAGAAAGCTCGAATGGAATCGGAAGAATGAACAACTTTGTGTGTGCGTCAATTATCAAATGATTTGTACCACTATGATTATTAACTTTGCAGGATTTGCGGTATCAAATCATTTACGTATTTCCCAAAACCCGACTTCAGCAATCAAATCCAAACTCAAATCATAAATTTTTATCGGTTTTCTCATTTTTCTGTATTTCTGAATACCATGTCAACCACATCTTATTAAGATAATTAGATTTTTGTTAAAATTGTCTTTCCCATCTTTCTCCTTCCTCAAAATTCACGTTTTCCCTTCGCAATGCAATTTTTTTCTAATTTCTACCAGTCGAAAATTTTTTTAATGTTCAGCTGAATTTTTAACACTGTCTTTTCAACTGAGTTTTTCTTTTGTCAATGATAATTTTTGAGGCTCGCAAGCTGTTTTAAAACTATGATGTTTCAGCATCACACAACGGAAATTTCAATTTGTAGCGGAACTTTCAAAACTTTTGTTTACCACTTCAGTATAATTCTTTTCTCCTTATCAGTCTCCATTTTTTTTCCTCAGCTTGCTAACCCTAAAAATCGCAGAATAAAAAAGAACTATTCTTAATTTTATTTTTCATTTATTGACCAACAAATTTTTCTCCACTTCATTCAAAATGAACCGCACCGCTGAGAACATGACCGATGCAATCACCTACTTGTCTCTTGTTGTGGATCATGTCAACTCAAACAAGGTACGTTTATGAGACACGCAAATAAATGATTACAACATCA</canonical>
            <polymorphic>CAAAGAAACTTGAACAAGGTCATGAAGAAGTTCTGCAAAAAACTGAGGATCTCAATATGCAATAAGAAGCGATGGATGAGATAATAAAGAAGATAACCGAAATCGAAAAAAACCTTCGTGAAAAACCAGGCTGAGCTAATGAAATTGGAGAAAAATTGGTTGTTCATCGAAAAAGTACAAAGTTCTTTGGAATTCTTAATATGCCGTCTGTGGAGCCTTCTGAGGATGAGACTGCACCAAAGAAAGCTCGAATGGAATCGGAAGAATGAACAACTTTGTGTGTGCGTCAATTATCAAATGATTTGTACCACTATGATTATTAACTTTGCAGGATTTGCGGTATCAAATCATTTACGTATTTCCCAAAACCCGACTTCAGCAATCAAATCCAAACTCAAATCATAAATTTTTATCGGTTTTCTCATTTTTCTGTATTTCTGAATACCATGTCAACCACATCTTATTAAGATAATTAGATTTTTGTTAAAATTGTCTTTCCYATCTTTCTCCTTCCTCAAAATTCACGTTTTCCCTTCGCAATGCAATTTTTTTCTAATTTCTACCAGTCGAAAATTTTTTTAATGTTCAGCTGAATTTTTAACACTGTCTTTTCAACTGAGTTTTTCTTTTGTCAATGATAATTTTTGAGGCTCGCAAGCTGTTTTAAAACTATGATGTTTCAGCATCACACAACGGAAATTTCAATTTGTAGCGGAACTTTCAAAACTTTTGTTTACCACTTCAGTATAATTCTTTTCTCCTTATCAGTCTCCATTTTTTTTCCTCAGCTTGCTAACCCTAAAAATCGCAGAATAAAAAAGAACTATTCTTAATTTTATTTTTCATTTATTGACCAACAAATTTTTCTCCACTTCATTCAAAATGAACCGCACCGCTGAGAACATGACCGATGCAATCACCTACTTGTCTCTTGTTGTGGATCATGTCAACTCAAACAAGGTACGTTTATGAGACACGCAAATAAATGATTACAACATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAAATCCAAACTCAAATCATA</pcr_primer_p1>
		<pcr_primer_p2>CAAAAGAAAAACTCAGTTGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCAAATCCAAACTCAAATCATAAATTTTTATCGGTTTTCTCATTTTTCTGTATTTCTGAATACCATGTCAACCACATCTTATTAAGATAATTAGATTTTTGTTAAAATTGTCTTTCCCATCTTTCTCCTTCCTCAAAATTCACGTTTTCCCTTCGCAATGCAATTTTTTTCTAATTTCTACCAGTCGAAAATTTTTTTAATGTTCAGCTGAATTTTTAACACTGTCTTTTCAACTGAGTTTTTCTTTTG</canonical_amplicon>
		<polymorphic_amplicon>ATCAAATCCAAACTCAAATCATAAATTTTTATCGGTTTTCTCATTTTTCTGTATTTCTGAATACCATGTCAACCACATCTTATTAAGATAATTAGATTTTTGTTAAAATTGTCTTTCCYATCTTTCTCCTTCCTCAAAATTCACGTTTTCCCTTCGCAATGCAATTTTTTTCTAATTTCTACCAGTCGAAAATTTTTTTAATGTTCAGCTGAATTTTTAACACTGTCTTTTCAACTGAGTTTTTCTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6827</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>530831</contig_pos>
        <strand>+</strand>
        <context>ATGGATAGAW[A/C]TTCCCTCAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGATCGACAACCATGCACACAGATGTTACCTCCCACACAATGGATAGAA</left_flank>
        <right_flank>TTCCCTCAGCAAAAAGCGCTGATGGTAAAAAAAAAGAAGATAAAAGAAGT</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCATAACCATGAATGTGAATAGCATCAGTAATGTAGGGAACGAAATTCCGATAATTTTTTGAATGTGTGCAGGATTGGGCTACGGTATGTCAAAGACGCACATGAGAAGCTTTCTTGCGGGTTTCTAGCGGAAGTATTTTTGATATGTTTGTGTTTTCGTAATTTGTTTGTCAAGTTCTACTTTTTTATGACAAAAAAGAAATAATTTTTCAAAACTGACTAAAACTAAAACATCTTGTTCAAGCTTGTCCATCAAATGTATTTCAGTACTTCAAGTTTCTGAAACGTTTATTCTGAGAATTTGCTTCTGCTCAGTTGGAATTGAGATTTTTTAACCATATACAGTTTTCATAATTTTCCAGACTCAAGATCATCTGATCCCTTCAAAAATTGTTCGACACCAACCAGTCTCCAAAAAAAAAGAAGATTGGGGGAAAATTCTTCTTTCCCTGATCGACAACCATGCACACAGATGTTACCTCCCACACAATGGATAGAAATTCCCTCAGCAAAAAGCGCTGATGGTAAAAAAAAAGAAGATAAAAGAAGTGATCACAAGTGAGACGAGACAAACAACAACTGAAAAAGATGATAGAGACACAAAAATCCTCTGCTTCTAACCCACATTACACTGTCACACTCTGAACCTCTCCGACATCTGAACTCTTCTTGAATTGTGCTTCTATCTCTATCTCTTCCAAGTCATCAAAGTTTTTGTGACACCGTCAAAAAACGAGAAATAGGTTTGGCACTGCCCCGGAGTGAAATTTGTCGTTGGTTTGACTTTTCTTCGCTTTTCTTTTTCTGTTTTTTCCAATTTTTGCTTTCAGATATGTCCTACTCGACCTATCTTCCAAACAACTATCATGATGAAGTCAGTTGTTAACTTTTTTAATACCAAAAAGTGCATTTTGCAAATTTTTAAGACCAAAATATACATCAATGGCGTGGAGCTTCTGAATCGTCACGAACTCTCCTCAACACAAGATCGTGAACTTCA</canonical>
            <polymorphic>GCATAACCATGAATGTGAATAGCATCAGTAATGTAGGGAACGAAATTCCGATAATTTTTTGAATGTGTGCAGGATTGGGCTACGGTATGTCAAAGACGCACATGAGAAGCTTTCTTGCGGGTTTCTAGCGGAAGTATTTTTGATATGTTTGTGTTTTCGTAATTTGTTTGTCAAGTTCTACTTTTTTATGACAAAAAAGAAATAATTTTTCAAAACTGACTAAAACTAAAACATCTTGTTCAAGCTTGTCCATCAAATGTATTTCAGTACTTCAAGTTTCTGAAACGTTTATTCTGAGAATTTGCTTCTGCTCAGTTGGAATTGAGATTTTTTAACCATATACAGTTTTCATAATTTTCCAGACTCAAGATCATCTGATCCCTTCAAAAATTGTTCGACACCAACCAGTCTCCAAAAAAAAAGAAGATTGGGGGAAAATTCTTCTTTCCCTGATCGACAACCATGCACACAGATGTTACCTCCCACACAATGGATAGAAMTTCCCTCAGCAAAAAGCGCTGATGGTAAAAAAAAAGAAGATAAAAGAAGTGATCACAAGTGAGACGAGACAAACAACAACTGAAAAAGATGATAGAGACACAAAAATCCTCTGCTTCTAACCCACATTACACTGTCACACTCTGAACCTCTCCGACATCTGAACTCTTCTTGAATTGTGCTTCTATCTCTATCTCTTCCAAGTCATCAAAGTTTTTGTGACACCGTCAAAAAACGAGAAATAGGTTTGGCACTGCCCCGGAGTGAAATTTGTCGTTGGTTTGACTTTTCTTCGCTTTTCTTTTTCTGTTTTTTCCAATTTTTGCTTTCAGATATGTCCTACTCGACCTATCTTCCAAACAACTATCATGATGAAGTCAGTTGTTAACTTTTTTAATACCAAAAAGTGCATTTTGCAAATTTTTAAGACCAAAATATACATCAATGGCGTGGAGCTTCTGAATCGTCACGAACTCTCCTCAACACAAGATCGTGAACTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>267 255 151 138 84 62 43</canonical_bands>
                <polymorphic_bands>329 255 151 138 84 43</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>174 108 101 95 93 84 62 50 48 43 43 36 33 21 9</canonical_bands>
                <polymorphic_bands>236 108 101 95 93 84 50 48 43 43 36 33 21 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCATAATTTTCCAGACTCA</pcr_primer_p1>
		<pcr_primer_p2>ATCATCTTTTTCAGTTGTTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCATAATTTTCCAGACTCAAGATCATCTGATCCCTTCAAAAATTGTTCGACACCAACCAGTCTCCAAAAAAAAAGAAGATTGGGGGAAAATTCTTCTTTCCCTGATCGACAACCATGCACACAGATGTTACCTCCCACACAATGGATAGAAATTCCCTCAGCAAAAAGCGCTGATGGTAAAAAAAAAGAAGATAAAAGAAGTGATCACAAGTGAGACGAGACAAACAACAACTGAAAAAGATGAT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCATAATTTTCCAGACTCAAGATCATCTGATCCCTTCAAAAATTGTTCGACACCAACCAGTCTCCAAAAAAAAAGAAGATTGGGGGAAAATTCTTCTTTCCCTGATCGACAACCATGCACACAGATGTTACCTCCCACACAATGGATAGAAMTTCCCTCAGCAAAAAGCGCTGATGGTAAAAAAAAAGAAGATAAAAGAAGTGATCACAAGTGAGACGAGACAAACAACAACTGAAAAAGATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6828</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>530830</contig_pos>
        <strand>+</strand>
        <context>AATGGATAGA[A/T]MTTCCCTCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCTGATCGACAACCATGCACACAGATGTTACCTCCCACACAATGGATAGA</left_flank>
        <right_flank>ATTCCCTCAGCAAAAAGCGCTGATGGTAAAAAAAAAGAAGATAAAAGAAG</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCATAACCATGAATGTGAATAGCATCAGTAATGTAGGGAACGAAATTCCGATAATTTTTTGAATGTGTGCAGGATTGGGCTACGGTATGTCAAAGACGCACATGAGAAGCTTTCTTGCGGGTTTCTAGCGGAAGTATTTTTGATATGTTTGTGTTTTCGTAATTTGTTTGTCAAGTTCTACTTTTTTATGACAAAAAAGAAATAATTTTTCAAAACTGACTAAAACTAAAACATCTTGTTCAAGCTTGTCCATCAAATGTATTTCAGTACTTCAAGTTTCTGAAACGTTTATTCTGAGAATTTGCTTCTGCTCAGTTGGAATTGAGATTTTTTAACCATATACAGTTTTCATAATTTTCCAGACTCAAGATCATCTGATCCCTTCAAAAATTGTTCGACACCAACCAGTCTCCAAAAAAAAAGAAGATTGGGGGAAAATTCTTCTTTCCCTGATCGACAACCATGCACACAGATGTTACCTCCCACACAATGGATAGAAATTCCCTCAGCAAAAAGCGCTGATGGTAAAAAAAAAGAAGATAAAAGAAGTGATCACAAGTGAGACGAGACAAACAACAACTGAAAAAGATGATAGAGACACAAAAATCCTCTGCTTCTAACCCACATTACACTGTCACACTCTGAACCTCTCCGACATCTGAACTCTTCTTGAATTGTGCTTCTATCTCTATCTCTTCCAAGTCATCAAAGTTTTTGTGACACCGTCAAAAAACGAGAAATAGGTTTGGCACTGCCCCGGAGTGAAATTTGTCGTTGGTTTGACTTTTCTTCGCTTTTCTTTTTCTGTTTTTTCCAATTTTTGCTTTCAGATATGTCCTACTCGACCTATCTTCCAAACAACTATCATGATGAAGTCAGTTGTTAACTTTTTTAATACCAAAAAGTGCATTTTGCAAATTTTTAAGACCAAAATATACATCAATGGCGTGGAGCTTCTGAATCGTCACGAACTCTCCTCAACACAAGATCGTGAACTTC</canonical>
            <polymorphic>GGCATAACCATGAATGTGAATAGCATCAGTAATGTAGGGAACGAAATTCCGATAATTTTTTGAATGTGTGCAGGATTGGGCTACGGTATGTCAAAGACGCACATGAGAAGCTTTCTTGCGGGTTTCTAGCGGAAGTATTTTTGATATGTTTGTGTTTTCGTAATTTGTTTGTCAAGTTCTACTTTTTTATGACAAAAAAGAAATAATTTTTCAAAACTGACTAAAACTAAAACATCTTGTTCAAGCTTGTCCATCAAATGTATTTCAGTACTTCAAGTTTCTGAAACGTTTATTCTGAGAATTTGCTTCTGCTCAGTTGGAATTGAGATTTTTTAACCATATACAGTTTTCATAATTTTCCAGACTCAAGATCATCTGATCCCTTCAAAAATTGTTCGACACCAACCAGTCTCCAAAAAAAAAGAAGATTGGGGGAAAATTCTTCTTTCCCTGATCGACAACCATGCACACAGATGTTACCTCCCACACAATGGATAGAWATTCCCTCAGCAAAAAGCGCTGATGGTAAAAAAAAAGAAGATAAAAGAAGTGATCACAAGTGAGACGAGACAAACAACAACTGAAAAAGATGATAGAGACACAAAAATCCTCTGCTTCTAACCCACATTACACTGTCACACTCTGAACCTCTCCGACATCTGAACTCTTCTTGAATTGTGCTTCTATCTCTATCTCTTCCAAGTCATCAAAGTTTTTGTGACACCGTCAAAAAACGAGAAATAGGTTTGGCACTGCCCCGGAGTGAAATTTGTCGTTGGTTTGACTTTTCTTCGCTTTTCTTTTTCTGTTTTTTCCAATTTTTGCTTTCAGATATGTCCTACTCGACCTATCTTCCAAACAACTATCATGATGAAGTCAGTTGTTAACTTTTTTAATACCAAAAAGTGCATTTTGCAAATTTTTAAGACCAAAATATACATCAATGGCGTGGAGCTTCTGAATCGTCACGAACTCTCCTCAACACAAGATCGTGAACTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>267 255 151 138 83 62 44</canonical_bands>
                <polymorphic_bands>329 255 151 138 83 44</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>174 108 101 95 93 83 62 50 48 44 43 36 33 21 9</canonical_bands>
                <polymorphic_bands>236 108 101 95 93 83 50 48 44 43 36 33 21 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCATAATTTTCCAGACTCA</pcr_primer_p1>
		<pcr_primer_p2>ATCATCTTTTTCAGTTGTTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCATAATTTTCCAGACTCAAGATCATCTGATCCCTTCAAAAATTGTTCGACACCAACCAGTCTCCAAAAAAAAAGAAGATTGGGGGAAAATTCTTCTTTCCCTGATCGACAACCATGCACACAGATGTTACCTCCCACACAATGGATAGAAATTCCCTCAGCAAAAAGCGCTGATGGTAAAAAAAAAGAAGATAAAAGAAGTGATCACAAGTGAGACGAGACAAACAACAACTGAAAAAGATGAT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCATAATTTTCCAGACTCAAGATCATCTGATCCCTTCAAAAATTGTTCGACACCAACCAGTCTCCAAAAAAAAAGAAGATTGGGGGAAAATTCTTCTTTCCCTGATCGACAACCATGCACACAGATGTTACCTCCCACACAATGGATAGAWATTCCCTCAGCAAAAAGCGCTGATGGTAAAAAAAAAGAAGATAAAAGAAGTGATCACAAGTGAGACGAGACAAACAACAACTGAAAAAGATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6829</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>530638</contig_pos>
        <strand>+</strand>
        <context>AGAATTTGCT[G/T]CTGCTCAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGTATTTCAGTACTTCAAGTTTCTGAAACGTTTATTCTGAGAATTTGCT</left_flank>
        <right_flank>CTGCTCAGTTGGAATTGAGATTTTTTAACCATATACAGTTTTCATAATTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTTGGGAATTTCCTAAATAGAGGTTGAAAAATAGAAGCCTATGGGCTTCAATCAGAGGAAATACGGTATGTTGCTTTTTTCGCTCACTGTCTTGGTCACGTCTTGCTCACACTTATTTTTTATTTTTGATGACTGAATTAAAAGTAGTATAAAGGTTTTCTCATGGCTGAATTGATAACATCAAACTTCGGCATAACCATGAATGTGAATAGCATCAGTAATGTAGGGAACGAAATTCCGATAATTTTTTGAATGTGTGCAGGATTGGGCTACGGTATGTCAAAGACGCACATGAGAAGCTTTCTTGCGGGTTTCTAGCGGAAGTATTTTTGATATGTTTGTGTTTTCGTAATTTGTTTGTCAAGTTCTACTTTTTTATGACAAAAAAGAAATAATTTTTCAAAACTGACTAAAACTAAAACATCTTGTTCAAGCTTGTCCATCAAATGTATTTCAGTACTTCAAGTTTCTGAAACGTTTATTCTGAGAATTTGCTTCTGCTCAGTTGGAATTGAGATTTTTTAACCATATACAGTTTTCATAATTTTCCAGACTCAAGATCATCTGATCCCTTCAAAAATTGTTCGACACCAACCAGTCTCCAAAAAAAAAGAAGATTGGGGGAAAATTCTTCTTTCCCTGATCGACAACCATGCACACAGATGTTACCTCCCACACAATGGATAGAAATTCCCTCAGCAAAAAGCGCTGATGGTAAAAAAAAAGAAGATAAAAGAAGTGATCACAAGTGAGACGAGACAAACAACAACTGAAAAAGATGATAGAGACACAAAAATCCTCTGCTTCTAACCCACATTACACTGTCACACTCTGAACCTCTCCGACATCTGAACTCTTCTTGAATTGTGCTTCTATCTCTATCTCTTCCAAGTCATCAAAGTTTTTGTGACACCGTCAAAAAACGAGAAATAGGTTTGGCACTGCCCCGGAGTGAAATTTGTCGTTGGTTTGACTTTTCTTCGCTTTTCTTTTTCTG</canonical>
            <polymorphic>GTTTTTGGGAATTTCCTAAATAGAGGTTGAAAAATAGAAGCCTATGGGCTTCAATCAGAGGAAATACGGTATGTTGCTTTTTTCGCTCACTGTCTTGGTCACGTCTTGCTCACACTTATTTTTTATTTTTGATGACTGAATTAAAAGTAGTATAAAGGTTTTCTCATGGCTGAATTGATAACATCAAACTTCGGCATAACCATGAATGTGAATAGCATCAGTAATGTAGGGAACGAAATTCCGATAATTTTTTGAATGTGTGCAGGATTGGGCTACGGTATGTCAAAGACGCACATGAGAAGCTTTCTTGCGGGTTTCTAGCGGAAGTATTTTTGATATGTTTGTGTTTTCGTAATTTGTTTGTCAAGTTCTACTTTTTTATGACAAAAAAGAAATAATTTTTCAAAACTGACTAAAACTAAAACATCTTGTTCAAGCTTGTCCATCAAATGTATTTCAGTACTTCAAGTTTCTGAAACGTTTATTCTGAGAATTTGCTKCTGCTCAGTTGGAATTGAGATTTTTTAACCATATACAGTTTTCATAATTTTCCAGACTCAAGATCATCTGATCCCTTCAAAAATTGTTCGACACCAACCAGTCTCCAAAAAAAAAGAAGATTGGGGGAAAATTCTTCTTTCCCTGATCGACAACCATGCACACAGATGTTACCTCCCACACAATGGATAGAAATTCCCTCAGCAAAAAGCGCTGATGGTAAAAAAAAAGAAGATAAAAGAAGTGATCACAAGTGAGACGAGACAAACAACAACTGAAAAAGATGATAGAGACACAAAAATCCTCTGCTTCTAACCCACATTACACTGTCACACTCTGAACCTCTCCGACATCTGAACTCTTCTTGAATTGTGCTTCTATCTCTATCTCTTCCAAGTCATCAAAGTTTTTGTGACACCGTCAAAAAACGAGAAATAGGTTTGGCACTGCCCCGGAGTGAAATTTGTCGTTGGTTTGACTTTTCTTCGCTTTTCTTTTTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATCAAATGTATTTCAGTACTTC</pcr_primer_p1>
		<pcr_primer_p2>ATTGTGTGGGAGGTAACATCT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CCATCAAATGTATTTCAGTACTTCAAGTTTCTGAAACGTTTATTCTGAGAATTTGCTTCTGCTCAGTTGGAATTGAGATTTTTTAACCATATACAGTTTTCATAATTTTCCAGACTCAAGATCATCTGATCCCTTCAAAAATTGTTCGACACCAACCAGTCTCCAAAAAAAAAGAAGATTGGGGGAAAATTCTTCTTTCCCTGATCGACAACCATGCACACAGATGTTACCTCCCACACAAT</canonical_amplicon>
		<polymorphic_amplicon>CCATCAAATGTATTTCAGTACTTCAAGTTTCTGAAACGTTTATTCTGAGAATTTGCTKCTGCTCAGTTGGAATTGAGATTTTTTAACCATATACAGTTTTCATAATTTTCCAGACTCAAGATCATCTGATCCCTTCAAAAATTGTTCGACACCAACCAGTCTCCAAAAAAAAAGAAGATTGGGGGAAAATTCTTCTTTCCCTGATCGACAACCATGCACACAGATGTTACCTCCCACACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6830</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>552745</contig_pos>
        <strand>+</strand>
        <context>GGAACATAAA[C/T]GCATAGGGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCTGTTCTTTGAATAGCCTTGTATAGAGAGTGGCTGTGGGAACATAAA</left_flank>
        <right_flank>GCATAGGGTTGAGAAATAAAGCAGCTGATTTTCTATATTGAGTTTTGTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAATTCATAACTTCGTTTCCTCCTCATTTCCTATTCCGTTGCTTTTGACGGGCGCCCATCAAATTTTGACGTTTGCGGTTTCTTGTTTTGTTTCTTGGTTCTTGTTTCTTGGATATTTAATTAAATTTGTTTCATTAAATAAATTAGTTTGCTAGGGAATTAATCAATACCACAAACTTTACAGTCTGTAAGTTTTTATCTAATGTTTCGGTCTGGAAATTGTTCTCAAAATTCTCCAAAAATGTAAAGCAAAGGAAAATGGAATTAGTCGGCTAAATTAAGAGATGACACTACTTCTTTTCTAGCGAATAACAACTTGAGCCACTATATTTCAGTCATATGAGAGAGCGTTAACGTGACATAAACTGACTCACCGGCAATGAATGAATCCAATATTCATAAAAGGAAATATATATTGAAAATATATCAAACACGAGAAGTGTGACCATTCCTGTTCTTTGAATAGCCTTGTATAGAGAGTGGCTGTGGGAACATAAATGCATAGGGTTGAGAAATAAAGCAGCTGATTTTCTATATTGAGTTTTGTTTTCGAATTCAATTATATAGTAAAGGTGAAAAAGAATCAGAAGTTTTTCGTTTTTATTTTGTTACTTGAAAATTTTTCAGTCATGTCTTCGAAAAAGGTTTCACTATTTTTATTTTCAAAAATTCAAAATATATTAATCTGATTTTTCAAAGATTTTAATCATATTTTAAATGTGTGAAATTTTTTTAAAAATCTAAAAAATCGTGCATTGAAAAGTTTAAATTTTAAATGTGTCTTAAAATTATTAAATGAAGTTGCGTATCAGAAAAAAAACTGTGAGACCAAATTTGATTTTCCATAATTTTTTGAAATTTTTTAAAATTAAAAATTTAAAAAATTTTTAATGAAAAATTTAATAATAAAATCGTTGGAAAATTGAAATTTAATTATGAATTTACAAAACAATTTGAATTATTAGTGCCAAAAAAAATAAAAAATACCAAACCAAGAAA</canonical>
            <polymorphic>TAAATTCATAACTTCGTTTCCTCCTCATTTCCTATTCCGTTGCTTTTGACGGGCGCCCATCAAATTTTGACGTTTGCGGTTTCTTGTTTTGTTTCTTGGTTCTTGTTTCTTGGATATTTAATTAAATTTGTTTCATTAAATAAATTAGTTTGCTAGGGAATTAATCAATACCACAAACTTTACAGTCTGTAAGTTTTTATCTAATGTTTCGGTCTGGAAATTGTTCTCAAAATTCTCCAAAAATGTAAAGCAAAGGAAAATGGAATTAGTCGGCTAAATTAAGAGATGACACTACTTCTTTTCTAGCGAATAACAACTTGAGCCACTATATTTCAGTCATATGAGAGAGCGTTAACGTGACATAAACTGACTCACCGGCAATGAATGAATCCAATATTCATAAAAGGAAATATATATTGAAAATATATCAAACACGAGAAGTGTGACCATTCCTGTTCTTTGAATAGCCTTGTATAGAGAGTGGCTGTGGGAACATAAAYGCATAGGGTTGAGAAATAAAGCAGCTGATTTTCTATATTGAGTTTTGTTTTCGAATTCAATTATATAGTAAAGGTGAAAAAGAATCAGAAGTTTTTCGTTTTTATTTTGTTACTTGAAAATTTTTCAGTCATGTCTTCGAAAAAGGTTTCACTATTTTTATTTTCAAAAATTCAAAATATATTAATCTGATTTTTCAAAGATTTTAATCATATTTTAAATGTGTGAAATTTTTTTAAAAATCTAAAAAATCGTGCATTGAAAAGTTTAAATTTTAAATGTGTCTTAAAATTATTAAATGAAGTTGCGTATCAGAAAAAAAACTGTGAGACCAAATTTGATTTTCCATAATTTTTTGAAATTTTTTAAAATTAAAAATTTAAAAAATTTTTAATGAAAAATTTAATAATAAAATCGTTGGAAAATTGAAATTTAATTATGAATTTACAAAACAATTTGAATTATTAGTGCCAAAAAAAATAAAAAATACCAAACCAAGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATGCAT</site>
                <isoschizomers>
                    <enzyme>BfrBI</enzyme>
                    <enzyme>EcoT22I</enzyme>
                    <enzyme>Mph1103I</enzyme>
                    <enzyme>NsiI</enzyme>
                    <enzyme>Ppu10I</enzyme>
                    <enzyme>Zsp2I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>501 253 246</canonical_bands>
                <polymorphic_bands>754 246</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACTTGAGCCACTATATTTCAG</pcr_primer_p1>
		<pcr_primer_p2>TAATTGAATTCGAAAACAAAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAACTTGAGCCACTATATTTCAGTCATATGAGAGAGCGTTAACGTGACATAAACTGACTCACCGGCAATGAATGAATCCAATATTCATAAAAGGAAATATATATTGAAAATATATCAAACACGAGAAGTGTGACCATTCCTGTTCTTTGAATAGCCTTGTATAGAGAGTGGCTGTGGGAACATAAATGCATAGGGTTGAGAAATAAAGCAGCTGATTTTCTATATTGAGTTTTGTTTTCGAATTCAATTA</canonical_amplicon>
		<polymorphic_amplicon>CAACTTGAGCCACTATATTTCAGTCATATGAGAGAGCGTTAACGTGACATAAACTGACTCACCGGCAATGAATGAATCCAATATTCATAAAAGGAAATATATATTGAAAATATATCAAACACGAGAAGTGTGACCATTCCTGTTCTTTGAATAGCCTTGTATAGAGAGTGGCTGTGGGAACATAAAYGCATAGGGTTGAGAAATAAAGCAGCTGATTTTCTATATTGAGTTTTGTTTTCGAATTCAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6831</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>553225</contig_pos>
        <strand></strand>
        <context>CAAAAAAAAT[A/G]AAAAATACCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTAATTATGAATTTACAAAACAATTTGAATTATTAGTGCCAAAAAAAAT</left_flank>
        <right_flank>AAAAATACCAAACCAAGAAATACTAAAAACGTAGAAACCAAAAATATCAC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGCTGTGGGAACATAAATGCATAGGGTTGAGAAATAAAGCAGCTGATTTTCTATATTGAGTTTTGTTTTCGAATTCAATTATATAGTAAAGGTGAAAAAGAATCAGAAGTTTTTCGTTTTTATTTTGTTACTTGAAAATTTTTCAGTCATGTCTTCGAAAAAGGTTTCACTATTTTTATTTTCAAAAATTCAAAATATATTAATCTGATTTTTCAAAGATTTTAATCATATTTTAAATGTGTGAAATTTTTTTAAAAATCTAAAAAATCGTGCATTGAAAAGTTTAAATTTTAAATGTGTCTTAAAATTATTAAATGAAGTTGCGTATCAGAAAAAAAACTGTGAGACCAAATTTGATTTTCCATAATTTTTTGAAATTTTTTAAAATTAAAAATTTAAAAAATTTTTAATGAAAAATTTAATAATAAAATCGTTGGAAAATTGAAATTTAATTATGAATTTACAAAACAATTTGAATTATTAGTGCCAAAAAAAATAAAAAATACCAAACCAAGAAATACTAAAAACGTAGAAACCAAAAATATCACGAAACCGCATAAACGACCAACGTCTTCGTCTCCGTTTATAAATAATTGCGTGTGGGACCAAGAAATGCAACACTACAACTTTGCCCTCAAAATGCAGAGACGGAAGACGGCTACTTATGTCTAATTCGAAAGAATTCTCCAACATTTTCACAAGAGAGAAAAAGAAAACTACGCATTTTGGAGAGCGAGAAAAGGAGAGTTCAAGGTTCGCAAAATATGAAATTTGAGAACTTGAAGCGATTTTTTTTTGAGTTGAAGGATTAGAGAAAAGTTATGTAGTCGGCCACTTTCTAATAAAAAAAACTGGTTACCGATTTCGCACGTGGATTTTTTGGGTGAACAACAACAACAACAACAACACTTCATTATGAGTGGAAAAGTCAGCGGAAGAACTAGCACTTTTTATTTTCAAAACAAAATTTCAAATCGAAAAGTTTGGCAAAGTCTTGT</canonical>
            <polymorphic>GTGGCTGTGGGAACATAAATGCATAGGGTTGAGAAATAAAGCAGCTGATTTTCTATATTGAGTTTTGTTTTCGAATTCAATTATATAGTAAAGGTGAAAAAGAATCAGAAGTTTTTCGTTTTTATTTTGTTACTTGAAAATTTTTCAGTCATGTCTTCGAAAAAGGTTTCACTATTTTTATTTTCAAAAATTCAAAATATATTAATCTGATTTTTCAAAGATTTTAATCATATTTTAAATGTGTGAAATTTTTTTAAAAATCTAAAAAATCGTGCATTGAAAAGTTTAAATTTTAAATGTGTCTTAAAATTATTAAATGAAGTTGCGTATCAGAAAAAAAACTGTGAGACCAAATTTGATTTTCCATAATTTTTTGAAATTTTTTAAAATTAAAAATTTAAAAAATTTTTAATGAAAAATTTAATAATAAAATCGTTGGAAAATTGAAATTTAATTATGAATTTACAAAACAATTTGAATTATTAGTGCCAAAAAAAATRAAAAATACCAAACCAAGAAATACTAAAAACGTAGAAACCAAAAATATCACGAAACCGCATAAACGACCAACGTCTTCGTCTCCGTTTATAAATAATTGCGTGTGGGACCAAGAAATGCAACACTACAACTTTGCCCTCAAAATGCAGAGACGGAAGACGGCTACTTATGTCTAATTCGAAAGAATTCTCCAACATTTTCACAAGAGAGAAAAAGAAAACTACGCATTTTGGAGAGCGAGAAAAGGAGAGTTCAAGGTTCGCAAAATATGAAATTTGAGAACTTGAAGCGATTTTTTTTTGAGTTGAAGGATTAGAGAAAAGTTATGTAGTCGGCCACTTTCTAATAAAAAAAACTGGTTACCGATTTCGCACGTGGATTTTTTGGGTGAACAACAACAACAACAACAACACTTCATTATGAGTGGAAAAGTCAGCGGAAGAACTAGCACTTTTTATTTTCAAAACAAAATTTCAAATCGAAAAGTTTGGCAAAGTCTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTAAATGAAGTTGCGTATCA</pcr_primer_p1>
		<pcr_primer_p2>TTTCGTGATATTTTTGGTTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTATTAAATGAAGTTGCGTATCAGAAAAAAAACTGTGAGACCAAATTTGATTTTCCATAATTTTTTGAAATTTTTTAAAATTAAAAATTTAAAAAATTTTTAATGAAAAATTTAATAATAAAATCGTTGGAAAATTGAAATTTAATTATGAATTTACAAAACAATTTGAATTATTAGTGCCAAAAAAAATAAAAAATACCAAACCAAGAAATACTAAAAACGTAGAAACCAAAAATATCACGAAA</canonical_amplicon>
		<polymorphic_amplicon>TTATTAAATGAAGTTGCGTATCAGAAAAAAAACTGTGAGACCAAATTTGATTTTCCATAATTTTTTGAAATTTTTTAAAATTAAAAATTTAAAAAATTTTTAATGAAAAATTTAATAATAAAATCGTTGGAAAATTGAAATTTAATTATGAATTTACAAAACAATTTGAATTATTAGTGCCAAAAAAAATRAAAAATACCAAACCAAGAAATACTAAAAACGTAGAAACCAAAAATATCACGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6832</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>553196</contig_pos>
        <strand>+</strand>
        <context>ATTTACAAAA[C/T]AATTTGAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAATAATAAAATCGTTGGAAAATTGAAATTTAATTATGAATTTACAAAA</left_flank>
        <right_flank>AATTTGAATTATTAGTGCCAAAAAAAATAAAAAATACCAAACCAAGAAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGTTCTTTGAATAGCCTTGTATAGAGAGTGGCTGTGGGAACATAAATGCATAGGGTTGAGAAATAAAGCAGCTGATTTTCTATATTGAGTTTTGTTTTCGAATTCAATTATATAGTAAAGGTGAAAAAGAATCAGAAGTTTTTCGTTTTTATTTTGTTACTTGAAAATTTTTCAGTCATGTCTTCGAAAAAGGTTTCACTATTTTTATTTTCAAAAATTCAAAATATATTAATCTGATTTTTCAAAGATTTTAATCATATTTTAAATGTGTGAAATTTTTTTAAAAATCTAAAAAATCGTGCATTGAAAAGTTTAAATTTTAAATGTGTCTTAAAATTATTAAATGAAGTTGCGTATCAGAAAAAAAACTGTGAGACCAAATTTGATTTTCCATAATTTTTTGAAATTTTTTAAAATTAAAAATTTAAAAAATTTTTAATGAAAAATTTAATAATAAAATCGTTGGAAAATTGAAATTTAATTATGAATTTACAAAACAATTTGAATTATTAGTGCCAAAAAAAATAAAAAATACCAAACCAAGAAATACTAAAAACGTAGAAACCAAAAATATCACGAAACCGCATAAACGACCAACGTCTTCGTCTCCGTTTATAAATAATTGCGTGTGGGACCAAGAAATGCAACACTACAACTTTGCCCTCAAAATGCAGAGACGGAAGACGGCTACTTATGTCTAATTCGAAAGAATTCTCCAACATTTTCACAAGAGAGAAAAAGAAAACTACGCATTTTGGAGAGCGAGAAAAGGAGAGTTCAAGGTTCGCAAAATATGAAATTTGAGAACTTGAAGCGATTTTTTTTTGAGTTGAAGGATTAGAGAAAAGTTATGTAGTCGGCCACTTTCTAATAAAAAAAACTGGTTACCGATTTCGCACGTGGATTTTTTGGGTGAACAACAACAACAACAACAACACTTCATTATGAGTGGAAAAGTCAGCGGAAGAACTAGCACTTTTTATTTTCAAAACAAAATT</canonical>
            <polymorphic>CCTGTTCTTTGAATAGCCTTGTATAGAGAGTGGCTGTGGGAACATAAATGCATAGGGTTGAGAAATAAAGCAGCTGATTTTCTATATTGAGTTTTGTTTTCGAATTCAATTATATAGTAAAGGTGAAAAAGAATCAGAAGTTTTTCGTTTTTATTTTGTTACTTGAAAATTTTTCAGTCATGTCTTCGAAAAAGGTTTCACTATTTTTATTTTCAAAAATTCAAAATATATTAATCTGATTTTTCAAAGATTTTAATCATATTTTAAATGTGTGAAATTTTTTTAAAAATCTAAAAAATCGTGCATTGAAAAGTTTAAATTTTAAATGTGTCTTAAAATTATTAAATGAAGTTGCGTATCAGAAAAAAAACTGTGAGACCAAATTTGATTTTCCATAATTTTTTGAAATTTTTTAAAATTAAAAATTTAAAAAATTTTTAATGAAAAATTTAATAATAAAATCGTTGGAAAATTGAAATTTAATTATGAATTTACAAAAYAATTTGAATTATTAGTGCCAAAAAAAATAAAAAATACCAAACCAAGAAATACTAAAAACGTAGAAACCAAAAATATCACGAAACCGCATAAACGACCAACGTCTTCGTCTCCGTTTATAAATAATTGCGTGTGGGACCAAGAAATGCAACACTACAACTTTGCCCTCAAAATGCAGAGACGGAAGACGGCTACTTATGTCTAATTCGAAAGAATTCTCCAACATTTTCACAAGAGAGAAAAAGAAAACTACGCATTTTGGAGAGCGAGAAAAGGAGAGTTCAAGGTTCGCAAAATATGAAATTTGAGAACTTGAAGCGATTTTTTTTTGAGTTGAAGGATTAGAGAAAAGTTATGTAGTCGGCCACTTTCTAATAAAAAAAACTGGTTACCGATTTCGCACGTGGATTTTTTGGGTGAACAACAACAACAACAACAACACTTCATTATGAGTGGAAAAGTCAGCGGAAGAACTAGCACTTTTTATTTTCAAAACAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTAAATGAAGTTGCGTATCA</pcr_primer_p1>
		<pcr_primer_p2>TTCGTGATATTTTTGGTTTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTATTAAATGAAGTTGCGTATCAGAAAAAAAACTGTGAGACCAAATTTGATTTTCCATAATTTTTTGAAATTTTTTAAAATTAAAAATTTAAAAAATTTTTAATGAAAAATTTAATAATAAAATCGTTGGAAAATTGAAATTTAATTATGAATTTACAAAACAATTTGAATTATTAGTGCCAAAAAAAATAAAAAATACCAAACCAAGAAATACTAAAAACGTAGAAACCAAAAATATCACGAA</canonical_amplicon>
		<polymorphic_amplicon>TTATTAAATGAAGTTGCGTATCAGAAAAAAAACTGTGAGACCAAATTTGATTTTCCATAATTTTTTGAAATTTTTTAAAATTAAAAATTTAAAAAATTTTTAATGAAAAATTTAATAATAAAATCGTTGGAAAATTGAAATTTAATTATGAATTTACAAAAYAATTTGAATTATTAGTGCCAAAAAAAATAAAAAATACCAAACCAAGAAATACTAAAAACGTAGAAACCAAAAATATCACGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6833</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>629594</contig_pos>
        <strand>+</strand>
        <context>TGGTCACGTG[A/G]AAGTCGAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCCCTATGCCCACATCTTCTCATTTTCTCATCTTGTTCATGGTCACGTG</left_flank>
        <right_flank>AAGTCGAAAGGATGGGAAATGCCGTCTAGACATCTTAACTGTCCTTTCTC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTACAGACAGACAGTTTGGAGGAACCAAACACTGCTGTATACTTGATACACAATGTACTGATACTAGAAGCAATCAAGTAGTCGAATAGCTGGGGGGGGCGCCCACAACAACGCCGCATCAAGCATGTGACGTCGGTGTCATTTCTCATTTTCTCACGTTTTCGTCCATCTACCGCATGGACTTTGCCCCATCCCGTAGTCGCCCGGGGCGTACGCACGTGCATCCCATGAGGCAATTGATATAGTATACAACGCAACAGACAATAATTGGAATTATTCATCTTTTCTCCGTTTTTCTCTTGTTCTGCAGCCGCAGAGATTTTGATAAAGATACGCACGCGACGACGAACAACACACGTTGGTACGGTTTTTGGGAAACACGACACAAGTGATGGAAGACCACACGCTGCGCAGGGAAATCGAGCGAGCGAAACGAGATTTCCGATATATCCCTATGCCCACATCTTCTCATTTTCTCATCTTGTTCATGGTCACGTGGAAGTCGAAAGGATGGGAAATGCCGTCTAGACATCTTAACTGTCCTTTCTCTCTCACTCTTATTCACATCGTTACTCCCAAAACCTTGATCCGACGGAAAATCGGAAAAGCGTTCTTTTTCGTCTCCTGTTATGTGTGTTCGAATCACTGCAAAATGTACAATTGGTGGGAGTAGTACTCACCACAGACGGATATTCTCTCCCATAGGGGCTTGTTTATTTGTTGTTGTGTGACTTGCAAAAGCCAAGCAGCTGATTCGTTCAAGCATGGAGGCATTGCTACTACTTGAGGATGACAACAACAAAAAACAAGGCGTCTCTTCTTTCCCCTGTCGTTTTGTAGTCGTCGGCATCAGGATGTTCGACGTGGAGACGGGGAACGCCCTGGACAACAAGAGAAAGTGACGAAAAGGGGACCTTCAAACATTTTTGACACAATTTGTTTTCAATTGAGAGATTTTTACAAATAGAGAAGTCAGATAAAAGCTTGTTTAATTCTGTG</canonical>
            <polymorphic>TTTACAGACAGACAGTTTGGAGGAACCAAACACTGCTGTATACTTGATACACAATGTACTGATACTAGAAGCAATCAAGTAGTCGAATAGCTGGGGGGGGCGCCCACAACAACGCCGCATCAAGCATGTGACGTCGGTGTCATTTCTCATTTTCTCACGTTTTCGTCCATCTACCGCATGGACTTTGCCCCATCCCGTAGTCGCCCGGGGCGTACGCACGTGCATCCCATGAGGCAATTGATATAGTATACAACGCAACAGACAATAATTGGAATTATTCATCTTTTCTCCGTTTTTCTCTTGTTCTGCAGCCGCAGAGATTTTGATAAAGATACGCACGCGACGACGAACAACACACGTTGGTACGGTTTTTGGGAAACACGACACAAGTGATGGAAGACCACACGCTGCGCAGGGAAATCGAGCGAGCGAAACGAGATTTCCGATATATCCCTATGCCCACATCTTCTCATTTTCTCATCTTGTTCATGGTCACGTGRAAGTCGAAAGGATGGGAAATGCCGTCTAGACATCTTAACTGTCCTTTCTCTCTCACTCTTATTCACATCGTTACTCCCAAAACCTTGATCCGACGGAAAATCGGAAAAGCGTTCTTTTTCGTCTCCTGTTATGTGTGTTCGAATCACTGCAAAATGTACAATTGGTGGGAGTAGTACTCACCACAGACGGATATTCTCTCCCATAGGGGCTTGTTTATTTGTTGTTGTGTGACTTGCAAAAGCCAAGCAGCTGATTCGTTCAAGCATGGAGGCATTGCTACTACTTGAGGATGACAACAACAAAAAACAAGGCGTCTCTTCTTTCCCCTGTCGTTTTGTAGTCGTCGGCATCAGGATGTTCGACGTGGAGACGGGGAACGCCCTGGACAACAAGAGAAAGTGACGAAAAGGGGACCTTCAAACATTTTTGACACAATTTGTTTTCAATTGAGAGATTTTTACAAATAGAGAAGTCAGATAAAAGCTTGTTTAATTCTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGAGATTTTGATAAAGATACG</pcr_primer_p1>
		<pcr_primer_p2>AAGAGTGAGAGAGAAAGGACAGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GCAGAGATTTTGATAAAGATACGCACGCGACGACGAACAACACACGTTGGTACGGTTTTTGGGAAACACGACACAAGTGATGGAAGACCACACGCTGCGCAGGGAAATCGAGCGAGCGAAACGAGATTTCCGATATATCCCTATGCCCACATCTTCTCATTTTCTCATCTTGTTCATGGTCACGTGGAAGTCGAAAGGATGGGAAATGCCGTCTAGACATCTTAACTGTCCTTTCTCTCTCACTCTT</canonical_amplicon>
		<polymorphic_amplicon>GCAGAGATTTTGATAAAGATACGCACGCGACGACGAACAACACACGTTGGTACGGTTTTTGGGAAACACGACACAAGTGATGGAAGACCACACGCTGCGCAGGGAAATCGAGCGAGCGAAACGAGATTTCCGATATATCCCTATGCCCACATCTTCTCATTTTCTCATCTTGTTCATGGTCACGTGRAAGTCGAAAGGATGGGAAATGCCGTCTAGACATCTTAACTGTCCTTTCTCTCTCACTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6834</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>629711</contig_pos>
        <strand>+</strand>
        <context>AAGCGTTCTT[C/T]TTCGTCTCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCGTTACTCCCAAAACCTTGATCCGACGGAAAATCGGAAAAGCGTTCTT</left_flank>
        <right_flank>TTCGTCTCCTGTTATGTGTGTTCGAATCACTGCAAAATGTACAATTGGTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCAAGCATGTGACGTCGGTGTCATTTCTCATTTTCTCACGTTTTCGTCCATCTACCGCATGGACTTTGCCCCATCCCGTAGTCGCCCGGGGCGTACGCACGTGCATCCCATGAGGCAATTGATATAGTATACAACGCAACAGACAATAATTGGAATTATTCATCTTTTCTCCGTTTTTCTCTTGTTCTGCAGCCGCAGAGATTTTGATAAAGATACGCACGCGACGACGAACAACACACGTTGGTACGGTTTTTGGGAAACACGACACAAGTGATGGAAGACCACACGCTGCGCAGGGAAATCGAGCGAGCGAAACGAGATTTCCGATATATCCCTATGCCCACATCTTCTCATTTTCTCATCTTGTTCATGGTCACGTGGAAGTCGAAAGGATGGGAAATGCCGTCTAGACATCTTAACTGTCCTTTCTCTCTCACTCTTATTCACATCGTTACTCCCAAAACCTTGATCCGACGGAAAATCGGAAAAGCGTTCTTTTTCGTCTCCTGTTATGTGTGTTCGAATCACTGCAAAATGTACAATTGGTGGGAGTAGTACTCACCACAGACGGATATTCTCTCCCATAGGGGCTTGTTTATTTGTTGTTGTGTGACTTGCAAAAGCCAAGCAGCTGATTCGTTCAAGCATGGAGGCATTGCTACTACTTGAGGATGACAACAACAAAAAACAAGGCGTCTCTTCTTTCCCCTGTCGTTTTGTAGTCGTCGGCATCAGGATGTTCGACGTGGAGACGGGGAACGCCCTGGACAACAAGAGAAAGTGACGAAAAGGGGACCTTCAAACATTTTTGACACAATTTGTTTTCAATTGAGAGATTTTTACAAATAGAGAAGTCAGATAAAAGCTTGTTTAATTCTGTGTTCAGAAGATCTAAGGATATCTCAGTACAGTAACCCGAACATTATGAAAACACATACAGTTCCAAACTAATGTTGATGTTGCGTTTCACGGGGGTTTTCAGACTTTTTGAGACCACA</canonical>
            <polymorphic>CATCAAGCATGTGACGTCGGTGTCATTTCTCATTTTCTCACGTTTTCGTCCATCTACCGCATGGACTTTGCCCCATCCCGTAGTCGCCCGGGGCGTACGCACGTGCATCCCATGAGGCAATTGATATAGTATACAACGCAACAGACAATAATTGGAATTATTCATCTTTTCTCCGTTTTTCTCTTGTTCTGCAGCCGCAGAGATTTTGATAAAGATACGCACGCGACGACGAACAACACACGTTGGTACGGTTTTTGGGAAACACGACACAAGTGATGGAAGACCACACGCTGCGCAGGGAAATCGAGCGAGCGAAACGAGATTTCCGATATATCCCTATGCCCACATCTTCTCATTTTCTCATCTTGTTCATGGTCACGTGGAAGTCGAAAGGATGGGAAATGCCGTCTAGACATCTTAACTGTCCTTTCTCTCTCACTCTTATTCACATCGTTACTCCCAAAACCTTGATCCGACGGAAAATCGGAAAAGCGTTCTTYTTCGTCTCCTGTTATGTGTGTTCGAATCACTGCAAAATGTACAATTGGTGGGAGTAGTACTCACCACAGACGGATATTCTCTCCCATAGGGGCTTGTTTATTTGTTGTTGTGTGACTTGCAAAAGCCAAGCAGCTGATTCGTTCAAGCATGGAGGCATTGCTACTACTTGAGGATGACAACAACAAAAAACAAGGCGTCTCTTCTTTCCCCTGTCGTTTTGTAGTCGTCGGCATCAGGATGTTCGACGTGGAGACGGGGAACGCCCTGGACAACAAGAGAAAGTGACGAAAAGGGGACCTTCAAACATTTTTGACACAATTTGTTTTCAATTGAGAGATTTTTACAAATAGAGAAGTCAGATAAAAGCTTGTTTAATTCTGTGTTCAGAAGATCTAAGGATATCTCAGTACAGTAACCCGAACATTATGAAAACACATACAGTTCCAAACTAATGTTGATGTTGCGTTTCACGGGGGTTTTCAGACTTTTTGAGACCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCTCACTCTTATTCACATCGT</pcr_primer_p1>
		<pcr_primer_p2>GTTGTCATCCTCAAGTAGTAGCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTCTCACTCTTATTCACATCGTTACTCCCAAAACCTTGATCCGACGGAAAATCGGAAAAGCGTTCTTTTTCGTCTCCTGTTATGTGTGTTCGAATCACTGCAAAATGTACAATTGGTGGGAGTAGTACTCACCACAGACGGATATTCTCTCCCATAGGGGCTTGTTTATTTGTTGTTGTGTGACTTGCAAAAGCCAAGCAGCTGATTCGTTCAAGCATGGAGGCATTGCTACTACTTGAGGATGACAAC</canonical_amplicon>
		<polymorphic_amplicon>TCTCTCACTCTTATTCACATCGTTACTCCCAAAACCTTGATCCGACGGAAAATCGGAAAAGCGTTCTTYTTCGTCTCCTGTTATGTGTGTTCGAATCACTGCAAAATGTACAATTGGTGGGAGTAGTACTCACCACAGACGGATATTCTCTCCCATAGGGGCTTGTTTATTTGTTGTTGTGTGACTTGCAAAAGCCAAGCAGCTGATTCGTTCAAGCATGGAGGCATTGCTACTACTTGAGGATGACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6835</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>629960</contig_pos>
        <strand>+</strand>
        <context>ATGTTCGACG[A/T]GGMGACGGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCTTCTTTCCCCTGTCGTTTTGTAGTCGTCGGCATCAGGATGTTCGACG</left_flank>
        <right_flank>GGAGACGGGGAACGCCCTGGACAACAAGAGAAAGTGACGAAAAGGGGACC</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTTTTGGGAAACACGACACAAGTGATGGAAGACCACACGCTGCGCAGGGAAATCGAGCGAGCGAAACGAGATTTCCGATATATCCCTATGCCCACATCTTCTCATTTTCTCATCTTGTTCATGGTCACGTGGAAGTCGAAAGGATGGGAAATGCCGTCTAGACATCTTAACTGTCCTTTCTCTCTCACTCTTATTCACATCGTTACTCCCAAAACCTTGATCCGACGGAAAATCGGAAAAGCGTTCTTTTTCGTCTCCTGTTATGTGTGTTCGAATCACTGCAAAATGTACAATTGGTGGGAGTAGTACTCACCACAGACGGATATTCTCTCCCATAGGGGCTTGTTTATTTGTTGTTGTGTGACTTGCAAAAGCCAAGCAGCTGATTCGTTCAAGCATGGAGGCATTGCTACTACTTGAGGATGACAACAACAAAAAACAAGGCGTCTCTTCTTTCCCCTGTCGTTTTGTAGTCGTCGGCATCAGGATGTTCGACGTGGAGACGGGGAACGCCCTGGACAACAAGAGAAAGTGACGAAAAGGGGACCTTCAAACATTTTTGACACAATTTGTTTTCAATTGAGAGATTTTTACAAATAGAGAAGTCAGATAAAAGCTTGTTTAATTCTGTGTTCAGAAGATCTAAGGATATCTCAGTACAGTAACCCGAACATTATGAAAACACATACAGTTCCAAACTAATGTTGATGTTGCGTTTCACGGGGGTTTTCAGACTTTTTGAGACCACACGAAATGAAAAATCTATGGGTTCAGAGAATTATAGTATTGTTGTAACATTTGAGATCTTCAGGAGTTCTGATTTCCCAAGGATTTCACAAGAGTAAACCTAAGATGTCGGTTATTTATCGTAAAATCTTTTACATAAAAAACCGCGAACTTCGACTCGATTTATCTGGTTCACTGTAACAATTAAAAATTCCAGAAAAATAAATTATTGATATTTTGGTCAACACTTGGTCAATTGTTAATTTTTTGAT</canonical>
            <polymorphic>GGTTTTTGGGAAACACGACACAAGTGATGGAAGACCACACGCTGCGCAGGGAAATCGAGCGAGCGAAACGAGATTTCCGATATATCCCTATGCCCACATCTTCTCATTTTCTCATCTTGTTCATGGTCACGTGGAAGTCGAAAGGATGGGAAATGCCGTCTAGACATCTTAACTGTCCTTTCTCTCTCACTCTTATTCACATCGTTACTCCCAAAACCTTGATCCGACGGAAAATCGGAAAAGCGTTCTTTTTCGTCTCCTGTTATGTGTGTTCGAATCACTGCAAAATGTACAATTGGTGGGAGTAGTACTCACCACAGACGGATATTCTCTCCCATAGGGGCTTGTTTATTTGTTGTTGTGTGACTTGCAAAAGCCAAGCAGCTGATTCGTTCAAGCATGGAGGCATTGCTACTACTTGAGGATGACAACAACAAAAAACAAGGCGTCTCTTCTTTCCCCTGTCGTTTTGTAGTCGTCGGCATCAGGATGTTCGACGWGGAGACGGGGAACGCCCTGGACAACAAGAGAAAGTGACGAAAAGGGGACCTTCAAACATTTTTGACACAATTTGTTTTCAATTGAGAGATTTTTACAAATAGAGAAGTCAGATAAAAGCTTGTTTAATTCTGTGTTCAGAAGATCTAAGGATATCTCAGTACAGTAACCCGAACATTATGAAAACACATACAGTTCCAAACTAATGTTGATGTTGCGTTTCACGGGGGTTTTCAGACTTTTTGAGACCACACGAAATGAAAAATCTATGGGTTCAGAGAATTATAGTATTGTTGTAACATTTGAGATCTTCAGGAGTTCTGATTTCCCAAGGATTTCACAAGAGTAAACCTAAGATGTCGGTTATTTATCGTAAAATCTTTTACATAAAAAACCGCGAACTTCGACTCGATTTATCTGGTTCACTGTAACAATTAAAAATTCCAGAAAAATAAATTATTGATATTTTGGTCAACACTTGGTCAATTGTTAATTTTTTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>136 87 85 70 67 57 56 52 52 46 36 35 33 31 27 25 21 15 13 11 10 9 6 5 4 3 2 2 2 2</canonical_bands>
                <polymorphic_bands>171 87 85 70 67 57 56 52 52 46 36 33 31 27 25 21 15 13 11 10 9 6 5 4 3 2 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>503 368 129</canonical_bands>
                <polymorphic_bands>871 129</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTGCTACTACTTGAGGATGAC</pcr_primer_p1>
		<pcr_primer_p2>ATCCTTAGATCTTCTGAACACAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CATTGCTACTACTTGAGGATGACAACAACAAAAAACAAGGCGTCTCTTCTTTCCCCTGTCGTTTTGTAGTCGTCGGCATCAGGATGTTCGACGTGGAGACGGGGAACGCCCTGGACAACAAGAGAAAGTGACGAAAAGGGGACCTTCAAACATTTTTGACACAATTTGTTTTCAATTGAGAGATTTTTACAAATAGAGAAGTCAGATAAAAGCTTGTTTAATTCTGTGTTCAGAAGATCTAAGGAT</canonical_amplicon>
		<polymorphic_amplicon>CATTGCTACTACTTGAGGATGACAACAACAAAAAACAAGGCGTCTCTTCTTTCCCCTGTCGTTTTGTAGTCGTCGGCATCAGGATGTTCGACGWGGAGACGGGGAACGCCCTGGACAACAAGAGAAAGTGACGAAAAGGGGACCTTCAAACATTTTTGACACAATTTGTTTTCAATTGAGAGATTTTTACAAATAGAGAAGTCAGATAAAAGCTTGTTTAATTCTGTGTTCAGAAGATCTAAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6836</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>629963</contig_pos>
        <strand>+</strand>
        <context>TTCGACGWGG[A/C]GACGGGGAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCTTTCCCCTGTCGTTTTGTAGTCGTCGGCATCAGGATGTTCGACGTGG</left_flank>
        <right_flank>GACGGGGAACGCCCTGGACAACAAGAGAAAGTGACGAAAAGGGGACCTTC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGGGAAACACGACACAAGTGATGGAAGACCACACGCTGCGCAGGGAAATCGAGCGAGCGAAACGAGATTTCCGATATATCCCTATGCCCACATCTTCTCATTTTCTCATCTTGTTCATGGTCACGTGGAAGTCGAAAGGATGGGAAATGCCGTCTAGACATCTTAACTGTCCTTTCTCTCTCACTCTTATTCACATCGTTACTCCCAAAACCTTGATCCGACGGAAAATCGGAAAAGCGTTCTTTTTCGTCTCCTGTTATGTGTGTTCGAATCACTGCAAAATGTACAATTGGTGGGAGTAGTACTCACCACAGACGGATATTCTCTCCCATAGGGGCTTGTTTATTTGTTGTTGTGTGACTTGCAAAAGCCAAGCAGCTGATTCGTTCAAGCATGGAGGCATTGCTACTACTTGAGGATGACAACAACAAAAAACAAGGCGTCTCTTCTTTCCCCTGTCGTTTTGTAGTCGTCGGCATCAGGATGTTCGACGTGGAGACGGGGAACGCCCTGGACAACAAGAGAAAGTGACGAAAAGGGGACCTTCAAACATTTTTGACACAATTTGTTTTCAATTGAGAGATTTTTACAAATAGAGAAGTCAGATAAAAGCTTGTTTAATTCTGTGTTCAGAAGATCTAAGGATATCTCAGTACAGTAACCCGAACATTATGAAAACACATACAGTTCCAAACTAATGTTGATGTTGCGTTTCACGGGGGTTTTCAGACTTTTTGAGACCACACGAAATGAAAAATCTATGGGTTCAGAGAATTATAGTATTGTTGTAACATTTGAGATCTTCAGGAGTTCTGATTTCCCAAGGATTTCACAAGAGTAAACCTAAGATGTCGGTTATTTATCGTAAAATCTTTTACATAAAAAACCGCGAACTTCGACTCGATTTATCTGGTTCACTGTAACAATTAAAAATTCCAGAAAAATAAATTATTGATATTTTGGTCAACACTTGGTCAATTGTTAATTTTTTGATATT</canonical>
            <polymorphic>TTTTGGGAAACACGACACAAGTGATGGAAGACCACACGCTGCGCAGGGAAATCGAGCGAGCGAAACGAGATTTCCGATATATCCCTATGCCCACATCTTCTCATTTTCTCATCTTGTTCATGGTCACGTGGAAGTCGAAAGGATGGGAAATGCCGTCTAGACATCTTAACTGTCCTTTCTCTCTCACTCTTATTCACATCGTTACTCCCAAAACCTTGATCCGACGGAAAATCGGAAAAGCGTTCTTTTTCGTCTCCTGTTATGTGTGTTCGAATCACTGCAAAATGTACAATTGGTGGGAGTAGTACTCACCACAGACGGATATTCTCTCCCATAGGGGCTTGTTTATTTGTTGTTGTGTGACTTGCAAAAGCCAAGCAGCTGATTCGTTCAAGCATGGAGGCATTGCTACTACTTGAGGATGACAACAACAAAAAACAAGGCGTCTCTTCTTTCCCCTGTCGTTTTGTAGTCGTCGGCATCAGGATGTTCGACGTGGMGACGGGGAACGCCCTGGACAACAAGAGAAAGTGACGAAAAGGGGACCTTCAAACATTTTTGACACAATTTGTTTTCAATTGAGAGATTTTTACAAATAGAGAAGTCAGATAAAAGCTTGTTTAATTCTGTGTTCAGAAGATCTAAGGATATCTCAGTACAGTAACCCGAACATTATGAAAACACATACAGTTCCAAACTAATGTTGATGTTGCGTTTCACGGGGGTTTTCAGACTTTTTGAGACCACACGAAATGAAAAATCTATGGGTTCAGAGAATTATAGTATTGTTGTAACATTTGAGATCTTCAGGAGTTCTGATTTCCCAAGGATTTCACAAGAGTAAACCTAAGATGTCGGTTATTTATCGTAAAATCTTTTACATAAAAAACCGCGAACTTCGACTCGATTTATCTGGTTCACTGTAACAATTAAAAATTCCAGAAAAATAAATTATTGATATTTTGGTCAACACTTGGTCAATTGTTAATTTTTTGATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTGCTACTACTTGAGGATGAC</pcr_primer_p1>
		<pcr_primer_p2>ATCCTTAGATCTTCTGAACACAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CATTGCTACTACTTGAGGATGACAACAACAAAAAACAAGGCGTCTCTTCTTTCCCCTGTCGTTTTGTAGTCGTCGGCATCAGGATGTTCGACGTGGAGACGGGGAACGCCCTGGACAACAAGAGAAAGTGACGAAAAGGGGACCTTCAAACATTTTTGACACAATTTGTTTTCAATTGAGAGATTTTTACAAATAGAGAAGTCAGATAAAAGCTTGTTTAATTCTGTGTTCAGAAGATCTAAGGAT</canonical_amplicon>
		<polymorphic_amplicon>CATTGCTACTACTTGAGGATGACAACAACAAAAAACAAGGCGTCTCTTCTTTCCCCTGTCGTTTTGTAGTCGTCGGCATCAGGATGTTCGACGTGGMGACGGGGAACGCCCTGGACAACAAGAGAAAGTGACGAAAAGGGGACCTTCAAACATTTTTGACACAATTTGTTTTCAATTGAGAGATTTTTACAAATAGAGAAGTCAGATAAAAGCTTGTTTAATTCTGTGTTCAGAAGATCTAAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6837</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>630047</contig_pos>
        <strand>+</strand>
        <context>TTCAATTGAG[A/C]GATTTTTACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACGAAAAGGGGACCTTCAAACATTTTTGACACAATTTGTTTTCAATTGAG</left_flank>
        <right_flank>GATTTTTACAAATAGAGAAGTCAGATAAAAGCTTGTTTAATTCTGTGTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATGCCCACATCTTCTCATTTTCTCATCTTGTTCATGGTCACGTGGAAGTCGAAAGGATGGGAAATGCCGTCTAGACATCTTAACTGTCCTTTCTCTCTCACTCTTATTCACATCGTTACTCCCAAAACCTTGATCCGACGGAAAATCGGAAAAGCGTTCTTTTTCGTCTCCTGTTATGTGTGTTCGAATCACTGCAAAATGTACAATTGGTGGGAGTAGTACTCACCACAGACGGATATTCTCTCCCATAGGGGCTTGTTTATTTGTTGTTGTGTGACTTGCAAAAGCCAAGCAGCTGATTCGTTCAAGCATGGAGGCATTGCTACTACTTGAGGATGACAACAACAAAAAACAAGGCGTCTCTTCTTTCCCCTGTCGTTTTGTAGTCGTCGGCATCAGGATGTTCGACGTGGAGACGGGGAACGCCCTGGACAACAAGAGAAAGTGACGAAAAGGGGACCTTCAAACATTTTTGACACAATTTGTTTTCAATTGAGAGATTTTTACAAATAGAGAAGTCAGATAAAAGCTTGTTTAATTCTGTGTTCAGAAGATCTAAGGATATCTCAGTACAGTAACCCGAACATTATGAAAACACATACAGTTCCAAACTAATGTTGATGTTGCGTTTCACGGGGGTTTTCAGACTTTTTGAGACCACACGAAATGAAAAATCTATGGGTTCAGAGAATTATAGTATTGTTGTAACATTTGAGATCTTCAGGAGTTCTGATTTCCCAAGGATTTCACAAGAGTAAACCTAAGATGTCGGTTATTTATCGTAAAATCTTTTACATAAAAAACCGCGAACTTCGACTCGATTTATCTGGTTCACTGTAACAATTAAAAATTCCAGAAAAATAAATTATTGATATTTTGGTCAACACTTGGTCAATTGTTAATTTTTTGATATTTTCCAAGCTGGCGAGAAAAATGACACAAAGTTTACGGTTAGAAGAAACTTCTATAATTACGGTAAGCCAATACGAATACTGAGC</canonical>
            <polymorphic>CTATGCCCACATCTTCTCATTTTCTCATCTTGTTCATGGTCACGTGGAAGTCGAAAGGATGGGAAATGCCGTCTAGACATCTTAACTGTCCTTTCTCTCTCACTCTTATTCACATCGTTACTCCCAAAACCTTGATCCGACGGAAAATCGGAAAAGCGTTCTTTTTCGTCTCCTGTTATGTGTGTTCGAATCACTGCAAAATGTACAATTGGTGGGAGTAGTACTCACCACAGACGGATATTCTCTCCCATAGGGGCTTGTTTATTTGTTGTTGTGTGACTTGCAAAAGCCAAGCAGCTGATTCGTTCAAGCATGGAGGCATTGCTACTACTTGAGGATGACAACAACAAAAAACAAGGCGTCTCTTCTTTCCCCTGTCGTTTTGTAGTCGTCGGCATCAGGATGTTCGACGTGGAGACGGGGAACGCCCTGGACAACAAGAGAAAGTGACGAAAAGGGGACCTTCAAACATTTTTGACACAATTTGTTTTCAATTGAGMGATTTTTACAAATAGAGAAGTCAGATAAAAGCTTGTTTAATTCTGTGTTCAGAAGATCTAAGGATATCTCAGTACAGTAACCCGAACATTATGAAAACACATACAGTTCCAAACTAATGTTGATGTTGCGTTTCACGGGGGTTTTCAGACTTTTTGAGACCACACGAAATGAAAAATCTATGGGTTCAGAGAATTATAGTATTGTTGTAACATTTGAGATCTTCAGGAGTTCTGATTTCCCAAGGATTTCACAAGAGTAAACCTAAGATGTCGGTTATTTATCGTAAAATCTTTTACATAAAAAACCGCGAACTTCGACTCGATTTATCTGGTTCACTGTAACAATTAAAAATTCCAGAAAAATAAATTATTGATATTTTGGTCAACACTTGGTCAATTGTTAATTTTTTGATATTTTCCAAGCTGGCGAGAAAAATGACACAAAGTTTACGGTTAGAAGAAACTTCTATAATTACGGTAAGCCAATACGAATACTGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTGCTACTACTTGAGGATGAC</pcr_primer_p1>
		<pcr_primer_p2>ATCCTTAGATCTTCTGAACACAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CATTGCTACTACTTGAGGATGACAACAACAAAAAACAAGGCGTCTCTTCTTTCCCCTGTCGTTTTGTAGTCGTCGGCATCAGGATGTTCGACGTGGAGACGGGGAACGCCCTGGACAACAAGAGAAAGTGACGAAAAGGGGACCTTCAAACATTTTTGACACAATTTGTTTTCAATTGAGAGATTTTTACAAATAGAGAAGTCAGATAAAAGCTTGTTTAATTCTGTGTTCAGAAGATCTAAGGAT</canonical_amplicon>
		<polymorphic_amplicon>CATTGCTACTACTTGAGGATGACAACAACAAAAAACAAGGCGTCTCTTCTTTCCCCTGTCGTTTTGTAGTCGTCGGCATCAGGATGTTCGACGTGGAGACGGGGAACGCCCTGGACAACAAGAGAAAGTGACGAAAAGGGGACCTTCAAACATTTTTGACACAATTTGTTTTCAATTGAGMGATTTTTACAAATAGAGAAGTCAGATAAAAGCTTGTTTAATTCTGTGTTCAGAAGATCTAAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6838</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>631239</contig_pos>
        <strand>+</strand>
        <context>GAGGAACTTT[C/T]GAACTCATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAACGAAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAGAGGAACTTT</left_flank>
        <right_flank>GAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCAT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTATTTCTAAAACACATTGACGCAATCTATCGTCATTATCAAGGCTTTCTGACGAATTCCCATTCTCATCTGCTTTTAACAGCTGCGGGAAAATTGAATCGAAGGACGGTTTGATGTACTATGTACTCACTTTCCTTGTTTAGACCAGTCCTTGTCATTTCTCCACTGGTGAAACCCACTTTAAAATGTGACAAAGGACAATTGACAGACATCGTCCGCTTCACATGATTCCACTTTGTCCTGCCTTGATGCAGCCACCACTGCCGACGTTTTTGTTTTTTGTCAGATGTCAGCGGTGGGACAGGAAATTGCAATGAAAGGAAGTGGGGCTTCCCTGTGGTGAGACGACGCGACGTATCTTACCATTTATAGCTATCAGTGGAATTATCGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCAGATTCCGAGCGAACGAAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAGAGGAACTTTCGAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCATTATGTACCAAGTACGGAGTTGTTCATTTTGGTTCAAACGAAGATATAAATTCTTTCTCAGATAGTTCGAAAAATTCAGAAAACTTTTGAATTCAATTAGACCAATTATAACAATGGTCATTAACTAATAATAATATTCATATTATTTGGAGCTTCCACCCGGAAATGAGCTTGTTTCTCTTAATCTACGGTCTTCTCTTAGAATGAAACCAATCAGACAAGGAAGTTGAGACTAGTTCAGGCATTCATTCGGAACTCTTCCTGGAAATTCTTTTCCCTATTCTGAACTTTGTCCACTTGAGTTTATTTGGACTTTACATTCAGTCTATATCTATCGAAAAAACAACAACACTGATCAGGAAAACACGTGAACACTGGTTTCAGACAAACGCACTTTGGCCATGTCTGCGAGCAACGTAAGGGCGAATTCCAAAGATATCATCAACAACTT</canonical>
            <polymorphic>TACTATTTCTAAAACACATTGACGCAATCTATCGTCATTATCAAGGCTTTCTGACGAATTCCCATTCTCATCTGCTTTTAACAGCTGCGGGAAAATTGAATCGAAGGACGGTTTGATGTACTATGTACTCACTTTCCTTGTTTAGACCAGTCCTTGTCATTTCTCCACTGGTGAAACCCACTTTAAAATGTGACAAAGGACAATTGACAGACATCGTCCGCTTCACATGATTCCACTTTGTCCTGCCTTGATGCAGCCACCACTGCCGACGTTTTTGTTTTTTGTCAGATGTCAGCGGTGGGACAGGAAATTGCAATGAAAGGAAGTGGGGCTTCCCTGTGGTGAGACGACGCGACGTATCTTACCATTTATAGCTATCAGTGGAATTATCGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCAGATTCCGAGCGAACGAAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAGAGGAACTTTYGAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCATTATGTACCAAGTACGGAGTTGTTCATTTTGGTTCAAACGAAGATATAAATTCTTTCTCAGATAGTTCGAAAAATTCAGAAAACTTTTGAATTCAATTAGACCAATTATAACAATGGTCATTAACTAATAATAATATTCATATTATTTGGAGCTTCCACCCGGAAATGAGCTTGTTTCTCTTAATCTACGGTCTTCTCTTAGAATGAAACCAATCAGACAAGGAAGTTGAGACTAGTTCAGGCATTCATTCGGAACTCTTCCTGGAAATTCTTTTCCCTATTCTGAACTTTGTCCACTTGAGTTTATTTGGACTTTACATTCAGTCTATATCTATCGAAAAAACAACAACACTGATCAGGAAAACACGTGAACACTGGTTTCAGACAAACGCACTTTGGCCATGTCTGCGAGCAACGTAAGGGCGAATTCCAAAGATATCATCAACAACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>499 384 117</canonical_bands>
                <polymorphic_bands>616 384</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>398 268 115 106 102 11</canonical_bands>
                <polymorphic_bands>409 268 115 106 102</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTTATCATCCGATCAATTT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAAGTTTTCTGAATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCAGATTCCGAGCGAACGAAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAGAGGAACTTTCGAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCATTATGTACCAAGTACGGAGTTGTTCATTTTGGTTCAAACGAAGATATAAATTCTTTCTCAGATAGTTCGAAAAATTCAGAAAACTTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>CGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCAGATTCCGAGCGAACGAAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAGAGGAACTTTYGAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCATTATGTACCAAGTACGGAGTTGTTCATTTTGGTTCAAACGAAGATATAAATTCTTTCTCAGATAGTTCGAAAAATTCAGAAAACTTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6839</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>631205</contig_pos>
        <strand>+</strand>
        <context>AAGAGCAAGC[A/G]AATAATGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGCGAAATGACAGAGGGGTTCCCCAGATTCCGAGCGAACGAAGAGCAAGC</left_flank>
        <right_flank>AATAATGTTTCGTTGAAATGGAAGAGGAACTTTCGAACTCATTTCGATGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGACGTAGATGAGTAGCAGCCAGCATGTTTTCTACTATTTCTAAAACACATTGACGCAATCTATCGTCATTATCAAGGCTTTCTGACGAATTCCCATTCTCATCTGCTTTTAACAGCTGCGGGAAAATTGAATCGAAGGACGGTTTGATGTACTATGTACTCACTTTCCTTGTTTAGACCAGTCCTTGTCATTTCTCCACTGGTGAAACCCACTTTAAAATGTGACAAAGGACAATTGACAGACATCGTCCGCTTCACATGATTCCACTTTGTCCTGCCTTGATGCAGCCACCACTGCCGACGTTTTTGTTTTTTGTCAGATGTCAGCGGTGGGACAGGAAATTGCAATGAAAGGAAGTGGGGCTTCCCTGTGGTGAGACGACGCGACGTATCTTACCATTTATAGCTATCAGTGGAATTATCGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCAGATTCCGAGCGAACGAAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAGAGGAACTTTCGAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCATTATGTACCAAGTACGGAGTTGTTCATTTTGGTTCAAACGAAGATATAAATTCTTTCTCAGATAGTTCGAAAAATTCAGAAAACTTTTGAATTCAATTAGACCAATTATAACAATGGTCATTAACTAATAATAATATTCATATTATTTGGAGCTTCCACCCGGAAATGAGCTTGTTTCTCTTAATCTACGGTCTTCTCTTAGAATGAAACCAATCAGACAAGGAAGTTGAGACTAGTTCAGGCATTCATTCGGAACTCTTCCTGGAAATTCTTTTCCCTATTCTGAACTTTGTCCACTTGAGTTTATTTGGACTTTACATTCAGTCTATATCTATCGAAAAAACAACAACACTGATCAGGAAAACACGTGAACACTGGTTTCAGACAAACGCACTTTGGCCATGTCTGCGAGCAACG</canonical>
            <polymorphic>CCAGACGTAGATGAGTAGCAGCCAGCATGTTTTCTACTATTTCTAAAACACATTGACGCAATCTATCGTCATTATCAAGGCTTTCTGACGAATTCCCATTCTCATCTGCTTTTAACAGCTGCGGGAAAATTGAATCGAAGGACGGTTTGATGTACTATGTACTCACTTTCCTTGTTTAGACCAGTCCTTGTCATTTCTCCACTGGTGAAACCCACTTTAAAATGTGACAAAGGACAATTGACAGACATCGTCCGCTTCACATGATTCCACTTTGTCCTGCCTTGATGCAGCCACCACTGCCGACGTTTTTGTTTTTTGTCAGATGTCAGCGGTGGGACAGGAAATTGCAATGAAAGGAAGTGGGGCTTCCCTGTGGTGAGACGACGCGACGTATCTTACCATTTATAGCTATCAGTGGAATTATCGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCAGATTCCGAGCGAACGAAGAGCAAGCRAATAATGTTTCGTTGAAATGGAAGAGGAACTTTCGAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCATTATGTACCAAGTACGGAGTTGTTCATTTTGGTTCAAACGAAGATATAAATTCTTTCTCAGATAGTTCGAAAAATTCAGAAAACTTTTGAATTCAATTAGACCAATTATAACAATGGTCATTAACTAATAATAATATTCATATTATTTGGAGCTTCCACCCGGAAATGAGCTTGTTTCTCTTAATCTACGGTCTTCTCTTAGAATGAAACCAATCAGACAAGGAAGTTGAGACTAGTTCAGGCATTCATTCGGAACTCTTCCTGGAAATTCTTTTCCCTATTCTGAACTTTGTCCACTTGAGTTTATTTGGACTTTACATTCAGTCTATATCTATCGAAAAAACAACAACACTGATCAGGAAAACACGTGAACACTGGTTTCAGACAAACGCACTTTGGCCATGTCTGCGAGCAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTATCATCCGATCAATTT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAAGTTTTCTGAATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCAGATTCCGAGCGAACGAAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAGAGGAACTTTCGAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCATTATGTACCAAGTACGGAGTTGTTCATTTTGGTTCAAACGAAGATATAAATTCTTTCTCAGATAGTTCGAAAAATTCAGAAAACTTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>CGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCAGATTCCGAGCGAACGAAGAGCAAGCRAATAATGTTTCGTTGAAATGGAAGAGGAACTTTCGAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCATTATGTACCAAGTACGGAGTTGTTCATTTTGGTTCAAACGAAGATATAAATTCTTTCTCAGATAGTTCGAAAAATTCAGAAAACTTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6840</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>631194</contig_pos>
        <strand>+</strand>
        <context>CCGAGCGAAC[A/G]AAGAGCAAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCAGATTCCGAGCGAAC</left_flank>
        <right_flank>AAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAGAGGAACTTTCGAACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACCCGATTCCCAGACGTAGATGAGTAGCAGCCAGCATGTTTTCTACTATTTCTAAAACACATTGACGCAATCTATCGTCATTATCAAGGCTTTCTGACGAATTCCCATTCTCATCTGCTTTTAACAGCTGCGGGAAAATTGAATCGAAGGACGGTTTGATGTACTATGTACTCACTTTCCTTGTTTAGACCAGTCCTTGTCATTTCTCCACTGGTGAAACCCACTTTAAAATGTGACAAAGGACAATTGACAGACATCGTCCGCTTCACATGATTCCACTTTGTCCTGCCTTGATGCAGCCACCACTGCCGACGTTTTTGTTTTTTGTCAGATGTCAGCGGTGGGACAGGAAATTGCAATGAAAGGAAGTGGGGCTTCCCTGTGGTGAGACGACGCGACGTATCTTACCATTTATAGCTATCAGTGGAATTATCGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCAGATTCCGAGCGAACGAAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAGAGGAACTTTCGAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCATTATGTACCAAGTACGGAGTTGTTCATTTTGGTTCAAACGAAGATATAAATTCTTTCTCAGATAGTTCGAAAAATTCAGAAAACTTTTGAATTCAATTAGACCAATTATAACAATGGTCATTAACTAATAATAATATTCATATTATTTGGAGCTTCCACCCGGAAATGAGCTTGTTTCTCTTAATCTACGGTCTTCTCTTAGAATGAAACCAATCAGACAAGGAAGTTGAGACTAGTTCAGGCATTCATTCGGAACTCTTCCTGGAAATTCTTTTCCCTATTCTGAACTTTGTCCACTTGAGTTTATTTGGACTTTACATTCAGTCTATATCTATCGAAAAAACAACAACACTGATCAGGAAAACACGTGAACACTGGTTTCAGACAAACGCACTTTGGCCATGTC</canonical>
            <polymorphic>TGACCCGATTCCCAGACGTAGATGAGTAGCAGCCAGCATGTTTTCTACTATTTCTAAAACACATTGACGCAATCTATCGTCATTATCAAGGCTTTCTGACGAATTCCCATTCTCATCTGCTTTTAACAGCTGCGGGAAAATTGAATCGAAGGACGGTTTGATGTACTATGTACTCACTTTCCTTGTTTAGACCAGTCCTTGTCATTTCTCCACTGGTGAAACCCACTTTAAAATGTGACAAAGGACAATTGACAGACATCGTCCGCTTCACATGATTCCACTTTGTCCTGCCTTGATGCAGCCACCACTGCCGACGTTTTTGTTTTTTGTCAGATGTCAGCGGTGGGACAGGAAATTGCAATGAAAGGAAGTGGGGCTTCCCTGTGGTGAGACGACGCGACGTATCTTACCATTTATAGCTATCAGTGGAATTATCGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCAGATTCCGAGCGAACRAAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAGAGGAACTTTCGAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCATTATGTACCAAGTACGGAGTTGTTCATTTTGGTTCAAACGAAGATATAAATTCTTTCTCAGATAGTTCGAAAAATTCAGAAAACTTTTGAATTCAATTAGACCAATTATAACAATGGTCATTAACTAATAATAATATTCATATTATTTGGAGCTTCCACCCGGAAATGAGCTTGTTTCTCTTAATCTACGGTCTTCTCTTAGAATGAAACCAATCAGACAAGGAAGTTGAGACTAGTTCAGGCATTCATTCGGAACTCTTCCTGGAAATTCTTTTCCCTATTCTGAACTTTGTCCACTTGAGTTTATTTGGACTTTACATTCAGTCTATATCTATCGAAAAAACAACAACACTGATCAGGAAAACACGTGAACACTGGTTTCAGACAAACGCACTTTGGCCATGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTATCATCCGATCAATTT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAAGTTTTCTGAATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCAGATTCCGAGCGAACGAAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAGAGGAACTTTCGAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCATTATGTACCAAGTACGGAGTTGTTCATTTTGGTTCAAACGAAGATATAAATTCTTTCTCAGATAGTTCGAAAAATTCAGAAAACTTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>CGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCAGATTCCGAGCGAACRAAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAGAGGAACTTTCGAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCATTATGTACCAAGTACGGAGTTGTTCATTTTGGTTCAAACGAAGATATAAATTCTTTCTCAGATAGTTCGAAAAATTCAGAAAACTTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6841</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>631179</contig_pos>
        <strand>+</strand>
        <context>GGGGTTCCCC[A/C]GATTCCGAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCC</left_flank>
        <right_flank>GATTCCGAGCGAACGAAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGATCAGCAAAGATGACCCGATTCCCAGACGTAGATGAGTAGCAGCCAGCATGTTTTCTACTATTTCTAAAACACATTGACGCAATCTATCGTCATTATCAAGGCTTTCTGACGAATTCCCATTCTCATCTGCTTTTAACAGCTGCGGGAAAATTGAATCGAAGGACGGTTTGATGTACTATGTACTCACTTTCCTTGTTTAGACCAGTCCTTGTCATTTCTCCACTGGTGAAACCCACTTTAAAATGTGACAAAGGACAATTGACAGACATCGTCCGCTTCACATGATTCCACTTTGTCCTGCCTTGATGCAGCCACCACTGCCGACGTTTTTGTTTTTTGTCAGATGTCAGCGGTGGGACAGGAAATTGCAATGAAAGGAAGTGGGGCTTCCCTGTGGTGAGACGACGCGACGTATCTTACCATTTATAGCTATCAGTGGAATTATCGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCAGATTCCGAGCGAACGAAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAGAGGAACTTTCGAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCATTATGTACCAAGTACGGAGTTGTTCATTTTGGTTCAAACGAAGATATAAATTCTTTCTCAGATAGTTCGAAAAATTCAGAAAACTTTTGAATTCAATTAGACCAATTATAACAATGGTCATTAACTAATAATAATATTCATATTATTTGGAGCTTCCACCCGGAAATGAGCTTGTTTCTCTTAATCTACGGTCTTCTCTTAGAATGAAACCAATCAGACAAGGAAGTTGAGACTAGTTCAGGCATTCATTCGGAACTCTTCCTGGAAATTCTTTTCCCTATTCTGAACTTTGTCCACTTGAGTTTATTTGGACTTTACATTCAGTCTATATCTATCGAAAAAACAACAACACTGATCAGGAAAACACGTGAACACTGGTTTCAGACAAACG</canonical>
            <polymorphic>TTTGATCAGCAAAGATGACCCGATTCCCAGACGTAGATGAGTAGCAGCCAGCATGTTTTCTACTATTTCTAAAACACATTGACGCAATCTATCGTCATTATCAAGGCTTTCTGACGAATTCCCATTCTCATCTGCTTTTAACAGCTGCGGGAAAATTGAATCGAAGGACGGTTTGATGTACTATGTACTCACTTTCCTTGTTTAGACCAGTCCTTGTCATTTCTCCACTGGTGAAACCCACTTTAAAATGTGACAAAGGACAATTGACAGACATCGTCCGCTTCACATGATTCCACTTTGTCCTGCCTTGATGCAGCCACCACTGCCGACGTTTTTGTTTTTTGTCAGATGTCAGCGGTGGGACAGGAAATTGCAATGAAAGGAAGTGGGGCTTCCCTGTGGTGAGACGACGCGACGTATCTTACCATTTATAGCTATCAGTGGAATTATCGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCMGATTCCGAGCGAACGAAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAGAGGAACTTTCGAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCATTATGTACCAAGTACGGAGTTGTTCATTTTGGTTCAAACGAAGATATAAATTCTTTCTCAGATAGTTCGAAAAATTCAGAAAACTTTTGAATTCAATTAGACCAATTATAACAATGGTCATTAACTAATAATAATATTCATATTATTTGGAGCTTCCACCCGGAAATGAGCTTGTTTCTCTTAATCTACGGTCTTCTCTTAGAATGAAACCAATCAGACAAGGAAGTTGAGACTAGTTCAGGCATTCATTCGGAACTCTTCCTGGAAATTCTTTTCCCTATTCTGAACTTTGTCCACTTGAGTTTATTTGGACTTTACATTCAGTCTATATCTATCGAAAAAACAACAACACTGATCAGGAAAACACGTGAACACTGGTTTCAGACAAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTATCATCCGATCAATTT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAAGTTTTCTGAATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCAGATTCCGAGCGAACGAAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAGAGGAACTTTCGAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCATTATGTACCAAGTACGGAGTTGTTCATTTTGGTTCAAACGAAGATATAAATTCTTTCTCAGATAGTTCGAAAAATTCAGAAAACTTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>CGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCMGATTCCGAGCGAACGAAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAGAGGAACTTTCGAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCATTATGTACCAAGTACGGAGTTGTTCATTTTGGTTCAAACGAAGATATAAATTCTTTCTCAGATAGTTCGAAAAATTCAGAAAACTTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6842</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>631128</contig_pos>
        <strand>+</strand>
        <context>CAGTGGAATT[A/G]TCGTTATCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGGTGAGACGACGCGACGTATCTTACCATTTATAGCTATCAGTGGAATT</left_flank>
        <right_flank>TCGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATTTCAAAGAATGTCTCGAAGAGCCATTTCATCCAGGAATAGAACAAATTTGATCAGCAAAGATGACCCGATTCCCAGACGTAGATGAGTAGCAGCCAGCATGTTTTCTACTATTTCTAAAACACATTGACGCAATCTATCGTCATTATCAAGGCTTTCTGACGAATTCCCATTCTCATCTGCTTTTAACAGCTGCGGGAAAATTGAATCGAAGGACGGTTTGATGTACTATGTACTCACTTTCCTTGTTTAGACCAGTCCTTGTCATTTCTCCACTGGTGAAACCCACTTTAAAATGTGACAAAGGACAATTGACAGACATCGTCCGCTTCACATGATTCCACTTTGTCCTGCCTTGATGCAGCCACCACTGCCGACGTTTTTGTTTTTTGTCAGATGTCAGCGGTGGGACAGGAAATTGCAATGAAAGGAAGTGGGGCTTCCCTGTGGTGAGACGACGCGACGTATCTTACCATTTATAGCTATCAGTGGAATTATCGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCAGATTCCGAGCGAACGAAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAGAGGAACTTTCGAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCATTATGTACCAAGTACGGAGTTGTTCATTTTGGTTCAAACGAAGATATAAATTCTTTCTCAGATAGTTCGAAAAATTCAGAAAACTTTTGAATTCAATTAGACCAATTATAACAATGGTCATTAACTAATAATAATATTCATATTATTTGGAGCTTCCACCCGGAAATGAGCTTGTTTCTCTTAATCTACGGTCTTCTCTTAGAATGAAACCAATCAGACAAGGAAGTTGAGACTAGTTCAGGCATTCATTCGGAACTCTTCCTGGAAATTCTTTTCCCTATTCTGAACTTTGTCCACTTGAGTTTATTTGGACTTTACATTCAGTCTATATCTATCGAAA</canonical>
            <polymorphic>AATATTTCAAAGAATGTCTCGAAGAGCCATTTCATCCAGGAATAGAACAAATTTGATCAGCAAAGATGACCCGATTCCCAGACGTAGATGAGTAGCAGCCAGCATGTTTTCTACTATTTCTAAAACACATTGACGCAATCTATCGTCATTATCAAGGCTTTCTGACGAATTCCCATTCTCATCTGCTTTTAACAGCTGCGGGAAAATTGAATCGAAGGACGGTTTGATGTACTATGTACTCACTTTCCTTGTTTAGACCAGTCCTTGTCATTTCTCCACTGGTGAAACCCACTTTAAAATGTGACAAAGGACAATTGACAGACATCGTCCGCTTCACATGATTCCACTTTGTCCTGCCTTGATGCAGCCACCACTGCCGACGTTTTTGTTTTTTGTCAGATGTCAGCGGTGGGACAGGAAATTGCAATGAAAGGAAGTGGGGCTTCCCTGTGGTGAGACGACGCGACGTATCTTACCATTTATAGCTATCAGTGGAATTRTCGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCAGATTCCGAGCGAACGAAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAGAGGAACTTTCGAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCATTATGTACCAAGTACGGAGTTGTTCATTTTGGTTCAAACGAAGATATAAATTCTTTCTCAGATAGTTCGAAAAATTCAGAAAACTTTTGAATTCAATTAGACCAATTATAACAATGGTCATTAACTAATAATAATATTCATATTATTTGGAGCTTCCACCCGGAAATGAGCTTGTTTCTCTTAATCTACGGTCTTCTCTTAGAATGAAACCAATCAGACAAGGAAGTTGAGACTAGTTCAGGCATTCATTCGGAACTCTTCCTGGAAATTCTTTTCCCTATTCTGAACTTTGTCCACTTGAGTTTATTTGGACTTTACATTCAGTCTATATCTATCGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGCAATGAAAGGAAGTG</pcr_primer_p1>
		<pcr_primer_p2>TGGTACATAATGATTGCTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATTGCAATGAAAGGAAGTGGGGCTTCCCTGTGGTGAGACGACGCGACGTATCTTACCATTTATAGCTATCAGTGGAATTATCGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCAGATTCCGAGCGAACGAAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAGAGGAACTTTCGAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCATTATGTACCA</canonical_amplicon>
		<polymorphic_amplicon>AATTGCAATGAAAGGAAGTGGGGCTTCCCTGTGGTGAGACGACGCGACGTATCTTACCATTTATAGCTATCAGTGGAATTRTCGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCAGATTCCGAGCGAACGAAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAGAGGAACTTTCGAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCATTATGTACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6843</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>631105</contig_pos>
        <strand>+</strand>
        <context>CGTAKCTTAC[A/C]ATTTATAGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGAAAGGAAGTGGGGCTTCCCTGTGGTGAGACGACGCGACGTATCTTAC</left_flank>
        <right_flank>ATTTATAGCTATCAGTGGAATTATCGTTATCATCCGATCAATTTCCGACG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATACTTAAAAATCTAACTCATAAATATTTCAAAGAATGTCTCGAAGAGCCATTTCATCCAGGAATAGAACAAATTTGATCAGCAAAGATGACCCGATTCCCAGACGTAGATGAGTAGCAGCCAGCATGTTTTCTACTATTTCTAAAACACATTGACGCAATCTATCGTCATTATCAAGGCTTTCTGACGAATTCCCATTCTCATCTGCTTTTAACAGCTGCGGGAAAATTGAATCGAAGGACGGTTTGATGTACTATGTACTCACTTTCCTTGTTTAGACCAGTCCTTGTCATTTCTCCACTGGTGAAACCCACTTTAAAATGTGACAAAGGACAATTGACAGACATCGTCCGCTTCACATGATTCCACTTTGTCCTGCCTTGATGCAGCCACCACTGCCGACGTTTTTGTTTTTTGTCAGATGTCAGCGGTGGGACAGGAAATTGCAATGAAAGGAAGTGGGGCTTCCCTGTGGTGAGACGACGCGACGTATCTTACCATTTATAGCTATCAGTGGAATTATCGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCAGATTCCGAGCGAACGAAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAGAGGAACTTTCGAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCATTATGTACCAAGTACGGAGTTGTTCATTTTGGTTCAAACGAAGATATAAATTCTTTCTCAGATAGTTCGAAAAATTCAGAAAACTTTTGAATTCAATTAGACCAATTATAACAATGGTCATTAACTAATAATAATATTCATATTATTTGGAGCTTCCACCCGGAAATGAGCTTGTTTCTCTTAATCTACGGTCTTCTCTTAGAATGAAACCAATCAGACAAGGAAGTTGAGACTAGTTCAGGCATTCATTCGGAACTCTTCCTGGAAATTCTTTTCCCTATTCTGAACTTTGTCCACTTGAGTTTATTTGGACTTTA</canonical>
            <polymorphic>AATACTTAAAAATCTAACTCATAAATATTTCAAAGAATGTCTCGAAGAGCCATTTCATCCAGGAATAGAACAAATTTGATCAGCAAAGATGACCCGATTCCCAGACGTAGATGAGTAGCAGCCAGCATGTTTTCTACTATTTCTAAAACACATTGACGCAATCTATCGTCATTATCAAGGCTTTCTGACGAATTCCCATTCTCATCTGCTTTTAACAGCTGCGGGAAAATTGAATCGAAGGACGGTTTGATGTACTATGTACTCACTTTCCTTGTTTAGACCAGTCCTTGTCATTTCTCCACTGGTGAAACCCACTTTAAAATGTGACAAAGGACAATTGACAGACATCGTCCGCTTCACATGATTCCACTTTGTCCTGCCTTGATGCAGCCACCACTGCCGACGTTTTTGTTTTTTGTCAGATGTCAGCGGTGGGACAGGAAATTGCAATGAAAGGAAGTGGGGCTTCCCTGTGGTGAGACGACGCGACGTATCTTACMATTTATAGCTATCAGTGGAATTATCGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCAGATTCCGAGCGAACGAAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAGAGGAACTTTCGAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCATTATGTACCAAGTACGGAGTTGTTCATTTTGGTTCAAACGAAGATATAAATTCTTTCTCAGATAGTTCGAAAAATTCAGAAAACTTTTGAATTCAATTAGACCAATTATAACAATGGTCATTAACTAATAATAATATTCATATTATTTGGAGCTTCCACCCGGAAATGAGCTTGTTTCTCTTAATCTACGGTCTTCTCTTAGAATGAAACCAATCAGACAAGGAAGTTGAGACTAGTTCAGGCATTCATTCGGAACTCTTCCTGGAAATTCTTTTCCCTATTCTGAACTTTGTCCACTTGAGTTTATTTGGACTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGCAATGAAAGGAAGTG</pcr_primer_p1>
		<pcr_primer_p2>TGGTACATAATGATTGCTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATTGCAATGAAAGGAAGTGGGGCTTCCCTGTGGTGAGACGACGCGACGTATCTTACCATTTATAGCTATCAGTGGAATTATCGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCAGATTCCGAGCGAACGAAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAGAGGAACTTTCGAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCATTATGTACCA</canonical_amplicon>
		<polymorphic_amplicon>AATTGCAATGAAAGGAAGTGGGGCTTCCCTGTGGTGAGACGACGCGACGTATCTTACMATTTATAGCTATCAGTGGAATTATCGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCAGATTCCGAGCGAACGAAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAGAGGAACTTTCGAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCATTATGTACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6844</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>631099</contig_pos>
        <strand>+</strand>
        <context>ACGCGACGTA[G/T]CTTACMATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTGCAATGAAAGGAAGTGGGGCTTCCCTGTGGTGAGACGACGCGACGTA</left_flank>
        <right_flank>CTTACCATTTATAGCTATCAGTGGAATTATCGTTATCATCCGATCAATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCGAATACTTAAAAATCTAACTCATAAATATTTCAAAGAATGTCTCGAAGAGCCATTTCATCCAGGAATAGAACAAATTTGATCAGCAAAGATGACCCGATTCCCAGACGTAGATGAGTAGCAGCCAGCATGTTTTCTACTATTTCTAAAACACATTGACGCAATCTATCGTCATTATCAAGGCTTTCTGACGAATTCCCATTCTCATCTGCTTTTAACAGCTGCGGGAAAATTGAATCGAAGGACGGTTTGATGTACTATGTACTCACTTTCCTTGTTTAGACCAGTCCTTGTCATTTCTCCACTGGTGAAACCCACTTTAAAATGTGACAAAGGACAATTGACAGACATCGTCCGCTTCACATGATTCCACTTTGTCCTGCCTTGATGCAGCCACCACTGCCGACGTTTTTGTTTTTTGTCAGATGTCAGCGGTGGGACAGGAAATTGCAATGAAAGGAAGTGGGGCTTCCCTGTGGTGAGACGACGCGACGTATCTTACCATTTATAGCTATCAGTGGAATTATCGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCAGATTCCGAGCGAACGAAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAGAGGAACTTTCGAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCATTATGTACCAAGTACGGAGTTGTTCATTTTGGTTCAAACGAAGATATAAATTCTTTCTCAGATAGTTCGAAAAATTCAGAAAACTTTTGAATTCAATTAGACCAATTATAACAATGGTCATTAACTAATAATAATATTCATATTATTTGGAGCTTCCACCCGGAAATGAGCTTGTTTCTCTTAATCTACGGTCTTCTCTTAGAATGAAACCAATCAGACAAGGAAGTTGAGACTAGTTCAGGCATTCATTCGGAACTCTTCCTGGAAATTCTTTTCCCTATTCTGAACTTTGTCCACTTGAGTTTATTTGG</canonical>
            <polymorphic>TTTCCGAATACTTAAAAATCTAACTCATAAATATTTCAAAGAATGTCTCGAAGAGCCATTTCATCCAGGAATAGAACAAATTTGATCAGCAAAGATGACCCGATTCCCAGACGTAGATGAGTAGCAGCCAGCATGTTTTCTACTATTTCTAAAACACATTGACGCAATCTATCGTCATTATCAAGGCTTTCTGACGAATTCCCATTCTCATCTGCTTTTAACAGCTGCGGGAAAATTGAATCGAAGGACGGTTTGATGTACTATGTACTCACTTTCCTTGTTTAGACCAGTCCTTGTCATTTCTCCACTGGTGAAACCCACTTTAAAATGTGACAAAGGACAATTGACAGACATCGTCCGCTTCACATGATTCCACTTTGTCCTGCCTTGATGCAGCCACCACTGCCGACGTTTTTGTTTTTTGTCAGATGTCAGCGGTGGGACAGGAAATTGCAATGAAAGGAAGTGGGGCTTCCCTGTGGTGAGACGACGCGACGTAKCTTACCATTTATAGCTATCAGTGGAATTATCGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCAGATTCCGAGCGAACGAAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAGAGGAACTTTCGAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCATTATGTACCAAGTACGGAGTTGTTCATTTTGGTTCAAACGAAGATATAAATTCTTTCTCAGATAGTTCGAAAAATTCAGAAAACTTTTGAATTCAATTAGACCAATTATAACAATGGTCATTAACTAATAATAATATTCATATTATTTGGAGCTTCCACCCGGAAATGAGCTTGTTTCTCTTAATCTACGGTCTTCTCTTAGAATGAAACCAATCAGACAAGGAAGTTGAGACTAGTTCAGGCATTCATTCGGAACTCTTCCTGGAAATTCTTTTCCCTATTCTGAACTTTGTCCACTTGAGTTTATTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGCAATGAAAGGAAGTG</pcr_primer_p1>
		<pcr_primer_p2>TGGTACATAATGATTGCTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATTGCAATGAAAGGAAGTGGGGCTTCCCTGTGGTGAGACGACGCGACGTATCTTACCATTTATAGCTATCAGTGGAATTATCGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCAGATTCCGAGCGAACGAAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAGAGGAACTTTCGAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCATTATGTACCA</canonical_amplicon>
		<polymorphic_amplicon>AATTGCAATGAAAGGAAGTGGGGCTTCCCTGTGGTGAGACGACGCGACGTAKCTTACCATTTATAGCTATCAGTGGAATTATCGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCAGATTCCGAGCGAACGAAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAGAGGAACTTTCGAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCATTATGTACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6845</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>631021</contig_pos>
        <strand>+</strand>
        <context>TTTTTGTTTT[C/T]TGTCAGATGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCACTTTGTCCTGCCTTGATGCAGCCACCACTGCCGACGTTTTTGTTTT</left_flank>
        <right_flank>TGTCAGATGTCAGCGGTGGGACAGGAAATTGCAATGAAAGGAAGTGGGGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGGTAAGCCAATACGAATACTGAGCCCGTTCAGTGAGAAAATCCTTTCATATCCGATTCGGTCTACTTTGCAGAAAATTTCCGAATACTTAAAAATCTAACTCATAAATATTTCAAAGAATGTCTCGAAGAGCCATTTCATCCAGGAATAGAACAAATTTGATCAGCAAAGATGACCCGATTCCCAGACGTAGATGAGTAGCAGCCAGCATGTTTTCTACTATTTCTAAAACACATTGACGCAATCTATCGTCATTATCAAGGCTTTCTGACGAATTCCCATTCTCATCTGCTTTTAACAGCTGCGGGAAAATTGAATCGAAGGACGGTTTGATGTACTATGTACTCACTTTCCTTGTTTAGACCAGTCCTTGTCATTTCTCCACTGGTGAAACCCACTTTAAAATGTGACAAAGGACAATTGACAGACATCGTCCGCTTCACATGATTCCACTTTGTCCTGCCTTGATGCAGCCACCACTGCCGACGTTTTTGTTTTTTGTCAGATGTCAGCGGTGGGACAGGAAATTGCAATGAAAGGAAGTGGGGCTTCCCTGTGGTGAGACGACGCGACGTATCTTACCATTTATAGCTATCAGTGGAATTATCGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCAGATTCCGAGCGAACGAAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAGAGGAACTTTCGAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCATTATGTACCAAGTACGGAGTTGTTCATTTTGGTTCAAACGAAGATATAAATTCTTTCTCAGATAGTTCGAAAAATTCAGAAAACTTTTGAATTCAATTAGACCAATTATAACAATGGTCATTAACTAATAATAATATTCATATTATTTGGAGCTTCCACCCGGAAATGAGCTTGTTTCTCTTAATCTACGGTCTTCTCTTAGAATGAAACCAATCAGACAAGGAAGTTGAGAC</canonical>
            <polymorphic>ACGGTAAGCCAATACGAATACTGAGCCCGTTCAGTGAGAAAATCCTTTCATATCCGATTCGGTCTACTTTGCAGAAAATTTCCGAATACTTAAAAATCTAACTCATAAATATTTCAAAGAATGTCTCGAAGAGCCATTTCATCCAGGAATAGAACAAATTTGATCAGCAAAGATGACCCGATTCCCAGACGTAGATGAGTAGCAGCCAGCATGTTTTCTACTATTTCTAAAACACATTGACGCAATCTATCGTCATTATCAAGGCTTTCTGACGAATTCCCATTCTCATCTGCTTTTAACAGCTGCGGGAAAATTGAATCGAAGGACGGTTTGATGTACTATGTACTCACTTTCCTTGTTTAGACCAGTCCTTGTCATTTCTCCACTGGTGAAACCCACTTTAAAATGTGACAAAGGACAATTGACAGACATCGTCCGCTTCACATGATTCCACTTTGTCCTGCCTTGATGCAGCCACCACTGCCGACGTTTTTGTTTTYTGTCAGATGTCAGCGGTGGGACAGGAAATTGCAATGAAAGGAAGTGGGGCTTCCCTGTGGTGAGACGACGCGACGTATCTTACCATTTATAGCTATCAGTGGAATTATCGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCAGATTCCGAGCGAACGAAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAGAGGAACTTTCGAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCATTATGTACCAAGTACGGAGTTGTTCATTTTGGTTCAAACGAAGATATAAATTCTTTCTCAGATAGTTCGAAAAATTCAGAAAACTTTTGAATTCAATTAGACCAATTATAACAATGGTCATTAACTAATAATAATATTCATATTATTTGGAGCTTCCACCCGGAAATGAGCTTGTTTCTCTTAATCTACGGTCTTCTCTTAGAATGAAACCAATCAGACAAGGAAGTTGAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTTTAAAATGTGACAAAGGAC</pcr_primer_p1>
		<pcr_primer_p2>GGAAATTGATCGGATGATAAC</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>CACTTTAAAATGTGACAAAGGACAATTGACAGACATCGTCCGCTTCACATGATTCCACTTTGTCCTGCCTTGATGCAGCCACCACTGCCGACGTTTTTGTTTTTTGTCAGATGTCAGCGGTGGGACAGGAAATTGCAATGAAAGGAAGTGGGGCTTCCCTGTGGTGAGACGACGCGACGTATCTTACCATTTATAGCTATCAGTGGAATTATCGTTATCATCCGATCAATTTCC</canonical_amplicon>
		<polymorphic_amplicon>CACTTTAAAATGTGACAAAGGACAATTGACAGACATCGTCCGCTTCACATGATTCCACTTTGTCCTGCCTTGATGCAGCCACCACTGCCGACGTTTTTGTTTTYTGTCAGATGTCAGCGGTGGGACAGGAAATTGCAATGAAAGGAAGTGGGGCTTCCCTGTGGTGAGACGACGCGACGTATCTTACCATTTATAGCTATCAGTGGAATTATCGTTATCATCCGATCAATTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6846</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>630914</contig_pos>
        <strand>+</strand>
        <context>CCACTGGTGA[A/G]ACCCACTTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTACTCACTTTCCTTGTTTAGACCAGTCCTTGTCATTTCTCCACTGGTGA</left_flank>
        <right_flank>ACCCACTTTAAAATGTGACAAAGGACAATTGACAGACATCGTCCGCTTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATTGATATTTTGGTCAACACTTGGTCAATTGTTAATTTTTTGATATTTTCCAAGCTGGCGAGAAAAATGACACAAAGTTTACGGTTAGAAGAAACTTCTATAATTACGGTAAGCCAATACGAATACTGAGCCCGTTCAGTGAGAAAATCCTTTCATATCCGATTCGGTCTACTTTGCAGAAAATTTCCGAATACTTAAAAATCTAACTCATAAATATTTCAAAGAATGTCTCGAAGAGCCATTTCATCCAGGAATAGAACAAATTTGATCAGCAAAGATGACCCGATTCCCAGACGTAGATGAGTAGCAGCCAGCATGTTTTCTACTATTTCTAAAACACATTGACGCAATCTATCGTCATTATCAAGGCTTTCTGACGAATTCCCATTCTCATCTGCTTTTAACAGCTGCGGGAAAATTGAATCGAAGGACGGTTTGATGTACTATGTACTCACTTTCCTTGTTTAGACCAGTCCTTGTCATTTCTCCACTGGTGAAACCCACTTTAAAATGTGACAAAGGACAATTGACAGACATCGTCCGCTTCACATGATTCCACTTTGTCCTGCCTTGATGCAGCCACCACTGCCGACGTTTTTGTTTTTTGTCAGATGTCAGCGGTGGGACAGGAAATTGCAATGAAAGGAAGTGGGGCTTCCCTGTGGTGAGACGACGCGACGTATCTTACCATTTATAGCTATCAGTGGAATTATCGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCAGATTCCGAGCGAACGAAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAGAGGAACTTTCGAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCATTATGTACCAAGTACGGAGTTGTTCATTTTGGTTCAAACGAAGATATAAATTCTTTCTCAGATAGTTCGAAAAATTCAGAAAACTTTTGAATTCAATTAGACCAATTATAACAATGGTCATTAACT</canonical>
            <polymorphic>TTATTGATATTTTGGTCAACACTTGGTCAATTGTTAATTTTTTGATATTTTCCAAGCTGGCGAGAAAAATGACACAAAGTTTACGGTTAGAAGAAACTTCTATAATTACGGTAAGCCAATACGAATACTGAGCCCGTTCAGTGAGAAAATCCTTTCATATCCGATTCGGTCTACTTTGCAGAAAATTTCCGAATACTTAAAAATCTAACTCATAAATATTTCAAAGAATGTCTCGAAGAGCCATTTCATCCAGGAATAGAACAAATTTGATCAGCAAAGATGACCCGATTCCCAGACGTAGATGAGTAGCAGCCAGCATGTTTTCTACTATTTCTAAAACACATTGACGCAATCTATCGTCATTATCAAGGCTTTCTGACGAATTCCCATTCTCATCTGCTTTTAACAGCTGCGGGAAAATTGAATCGAAGGACGGTTTGATGTACTATGTACTCACTTTCCTTGTTTAGACCAGTCCTTGTCATTTCTCCACTGGTGARACCCACTTTAAAATGTGACAAAGGACAATTGACAGACATCGTCCGCTTCACATGATTCCACTTTGTCCTGCCTTGATGCAGCCACCACTGCCGACGTTTTTGTTTTTTGTCAGATGTCAGCGGTGGGACAGGAAATTGCAATGAAAGGAAGTGGGGCTTCCCTGTGGTGAGACGACGCGACGTATCTTACCATTTATAGCTATCAGTGGAATTATCGTTATCATCCGATCAATTTCCGACGGCGAAATGACAGAGGGGTTCCCCAGATTCCGAGCGAACGAAGAGCAAGCAAATAATGTTTCGTTGAAATGGAAGAGGAACTTTCGAACTCATTTCGATGCTATAAATTTTGATTGATAAAAAAGAAGCAATCATTATGTACCAAGTACGGAGTTGTTCATTTTGGTTCAAACGAAGATATAAATTCTTTCTCAGATAGTTCGAAAAATTCAGAAAACTTTTGAATTCAATTAGACCAATTATAACAATGGTCATTAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGCATGTTTTCTACTATTTCT</pcr_primer_p1>
		<pcr_primer_p2>ACAAAGTGGAATCATGTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CCAGCATGTTTTCTACTATTTCTAAAACACATTGACGCAATCTATCGTCATTATCAAGGCTTTCTGACGAATTCCCATTCTCATCTGCTTTTAACAGCTGCGGGAAAATTGAATCGAAGGACGGTTTGATGTACTATGTACTCACTTTCCTTGTTTAGACCAGTCCTTGTCATTTCTCCACTGGTGAAACCCACTTTAAAATGTGACAAAGGACAATTGACAGACATCGTCCGCTTCACATGATTCCACTTTGT</canonical_amplicon>
		<polymorphic_amplicon>CCAGCATGTTTTCTACTATTTCTAAAACACATTGACGCAATCTATCGTCATTATCAAGGCTTTCTGACGAATTCCCATTCTCATCTGCTTTTAACAGCTGCGGGAAAATTGAATCGAAGGACGGTTTGATGTACTATGTACTCACTTTCCTTGTTTAGACCAGTCCTTGTCATTTCTCCACTGGTGARACCCACTTTAAAATGTGACAAAGGACAATTGACAGACATCGTCCGCTTCACATGATTCCACTTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6847</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>680763</contig_pos>
        <strand>+</strand>
        <context>TGGCTTCCAC[C/T]AGTGCACCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTACATCGTTGGGATCTAATGAATTTCTGAGCAACGATCTGGCTTCCAC</left_flank>
        <right_flank>AGTGCACCATTGATCAACCATGCTCCAAACGTCGCAGGAATTTCGGAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTATCTTCCAAATTCCAAAAAACGTGTAAAATAACATGTCTGATTCTAGAGGTACACCCAAAATAATGACAGATTATTTGAGTATAAATACACTTCAGACAATCGGCTTCGTGTTTCCTCCGCGAGCGAGCTCTCCGACGAGCTGAGTATTGAGCTTCTGACGGCAATGAATTTGGACACCGCTGACTTGCCCAATGTCTTTGATGATGAAGTGCTCCCAATTGGAGACGTGGCAGTTGGAGAAAGAGCTTCAGATATTAACAACAATTGTGAGTTAGACAACAGAAAGGATTTGATTTGATTAGTGATGTTGAAAAAGAGCGTTTTATCTTTTCCAGTAAATCACGTGTTAGATCAAGATGTTGCACAACGACCAGCGGAACCAGCAGCCGACGAAACTATTCGTCTGGTGGTAAACCAACTTCAGCAACTCCAGATCGGAGAATCTACATCGTTGGGATCTAATGAATTTCTGAGCAACGATCTGGCTTCCACCAGTGCACCATTGATCAACCATGCTCCAAACGTCGCAGGAATTTCGGAATCAGATGATTCAGATTCAGAGGTTTCACTCGTTGGTCCCGCACATAGCCCACCTCCACCAAGCGAAGATGGGCCAAGAAACCGGACTTCGCAGAACCAAAGAAGCAGAGAAAAACAAGGCTTCCGAATTGGTTACATGCCGAACTTGAAATGGAAACTTGACAAGAACCCTCCTATGTTCTCATCCCCAGTATGTCGGAACAACTTTGATCACGACCGATTCGTTCAGTTTGGAGATGGAATTTTATTCAATGGGGATGGAAACTACATATATGATAATAATCTCATCGCTGATCAGGAGGAAAGAAACCCACTAAATCTGCCAGATGTCATTGCTGTTGGTCCAAGGAATCGAGAGCCTTTCGACATGTTTCCAGCGGATCCAAGACCACCATGGGCCATCAGATCGATTGTGTCGAATGAGTACATTCCTATTGGAGAAATCAGCCAAAC</canonical>
            <polymorphic>AATTTTATCTTCCAAATTCCAAAAAACGTGTAAAATAACATGTCTGATTCTAGAGGTACACCCAAAATAATGACAGATTATTTGAGTATAAATACACTTCAGACAATCGGCTTCGTGTTTCCTCCGCGAGCGAGCTCTCCGACGAGCTGAGTATTGAGCTTCTGACGGCAATGAATTTGGACACCGCTGACTTGCCCAATGTCTTTGATGATGAAGTGCTCCCAATTGGAGACGTGGCAGTTGGAGAAAGAGCTTCAGATATTAACAACAATTGTGAGTTAGACAACAGAAAGGATTTGATTTGATTAGTGATGTTGAAAAAGAGCGTTTTATCTTTTCCAGTAAATCACGTGTTAGATCAAGATGTTGCACAACGACCAGCGGAACCAGCAGCCGACGAAACTATTCGTCTGGTGGTAAACCAACTTCAGCAACTCCAGATCGGAGAATCTACATCGTTGGGATCTAATGAATTTCTGAGCAACGATCTGGCTTCCACYAGTGCACCATTGATCAACCATGCTCCAAACGTCGCAGGAATTTCGGAATCAGATGATTCAGATTCAGAGGTTTCACTCGTTGGTCCCGCACATAGCCCACCTCCACCAAGCGAAGATGGGCCAAGAAACCGGACTTCGCAGAACCAAAGAAGCAGAGAAAAACAAGGCTTCCGAATTGGTTACATGCCGAACTTGAAATGGAAACTTGACAAGAACCCTCCTATGTTCTCATCCCCAGTATGTCGGAACAACTTTGATCACGACCGATTCGTTCAGTTTGGAGATGGAATTTTATTCAATGGGGATGGAAACTACATATATGATAATAATCTCATCGCTGATCAGGAGGAAAGAAACCCACTAAATCTGCCAGATGTCATTGCTGTTGGTCCAAGGAATCGAGAGCCTTTCGACATGTTTCCAGCGGATCCAAGACCACCATGGGCCATCAGATCGATTGTGTCGAATGAGTACATTCCTATTGGAGAAATCAGCCAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGTTTTATCTTTTCCAGTAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAACCTCTGAATCTGAATCATCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCGTTTTATCTTTTCCAGTAAATCACGTGTTAGATCAAGATGTTGCACAACGACCAGCGGAACCAGCAGCCGACGAAACTATTCGTCTGGTGGTAAACCAACTTCAGCAACTCCAGATCGGAGAATCTACATCGTTGGGATCTAATGAATTTCTGAGCAACGATCTGGCTTCCACCAGTGCACCATTGATCAACCATGCTCCAAACGTCGCAGGAATTTCGGAATCAGATGATTCAGATTCAGAGGTTT</canonical_amplicon>
		<polymorphic_amplicon>GCGTTTTATCTTTTCCAGTAAATCACGTGTTAGATCAAGATGTTGCACAACGACCAGCGGAACCAGCAGCCGACGAAACTATTCGTCTGGTGGTAAACCAACTTCAGCAACTCCAGATCGGAGAATCTACATCGTTGGGATCTAATGAATTTCTGAGCAACGATCTGGCTTCCACYAGTGCACCATTGATCAACCATGCTCCAAACGTCGCAGGAATTTCGGAATCAGATGATTCAGATTCAGAGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6848</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>682298</contig_pos>
        <strand>+</strand>
        <context>gtATATCCTT[C/T]TTTTCCGTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATGGGCTTGAATTTATAAGTTCTACTCCAGGTTTTATCGTATATCCTT</left_flank>
        <right_flank>TTTTCCGTGTTTGTATTTCTTGTATCTAAGTTATTTATCTAAGTTTTATC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATTTTTGGAGCAAAATCACTTCTGTCAACTGAAGTATTTTAGACTGGCCAATTTTCGAAATGAGTCTCTTTCGATTTTAAGTAAATAACGACCATCATTTAATTTAAATTCCCTTTTCATATAGTGGACCGTTAAATTTCGTCATTTCAAGTTCACTCGGTACATAGAGTTCACACAAAATTTTAGTTGACTTCATTTCTTAAAAATTCAACAATCGAGCTTTCAAACTCAATTCGAATTTTTTGAACTCATTTGTTCATGTATAGCTGCTCACTATCCCACCATAAAATGTTGTAGGAATGTCCTCACACCGTTGATTTTAAGCTCAATTATCCCGATTTCTATGAAAAATATCAAACATGTGTCAACTGACAAAACACGTCTGACATCACAATAAACATATTACCAGTTGTCAACTTTTTCATATCTTGGACAGGAACTGAGAATAATGGGCTTGAATTTATAAGTTCTACTCCAGGTTTTATCGTATATCCTTTTTTTCCGTGTTTGTATTTCTTGTATCTAAGTTATTTATCTAAGTTTTATCTAAGTATTTTGTTCTGAAAATCGGAAGTGAATGATCACCTTGACAACAGTTTCTGGGTTTCTGAATTATCAGTGTTCTTATTTTCTCAATTTTGTGCACATTCCTTTTTTGTCTATAATTTCCATCTTTCTGCATTCTATTTTCCCTTGATTTTCTTCATTTGTATTTTCACAAACTCGATCAAAAATAAACGTTTTATTAATAAGAATCCACACAAACTTTATCACTTCTATTCCGCCAATATCTTCTTTGCAACCGCCATCATTGCATTCGGGAACATCTCATGTTCCTGAACTTGTATCTTCTGCCGGATTGTTTCGATGGTGTCGCCGTCCTCCACCATGACAGGCCGTTGTGCGATTATATCTCCGTGATCCACCAATTCCTAAAATCACGGATGCATTGATGTGATACTATATTTTTGTGTCTTGTGCTCACGTCAACAAAATG</canonical>
            <polymorphic>AATATTTTTGGAGCAAAATCACTTCTGTCAACTGAAGTATTTTAGACTGGCCAATTTTCGAAATGAGTCTCTTTCGATTTTAAGTAAATAACGACCATCATTTAATTTAAATTCCCTTTTCATATAGTGGACCGTTAAATTTCGTCATTTCAAGTTCACTCGGTACATAGAGTTCACACAAAATTTTAGTTGACTTCATTTCTTAAAAATTCAACAATCGAGCTTTCAAACTCAATTCGAATTTTTTGAACTCATTTGTTCATGTATAGCTGCTCACTATCCCACCATAAAATGTTGTAGGAATGTCCTCACACCGTTGATTTTAAGCTCAATTATCCCGATTTCTATGAAAAATATCAAACATGTGTCAACTGACAAAACACGTCTGACATCACAATAAACATATTACCAGTTGTCAACTTTTTCATATCTTGGACAGGAACTGAGAATAATGGGCTTGAATTTATAAGTTCTACTCCAGGTTTTATCGTATATCCTTYTTTTCCGTGTTTGTATTTCTTGTATCTAAGTTATTTATCTAAGTTTTATCTAAGTATTTTGTTCTGAAAATCGGAAGTGAATGATCACCTTGACAACAGTTTCTGGGTTTCTGAATTATCAGTGTTCTTATTTTCTCAATTTTGTGCACATTCCTTTTTTGTCTATAATTTCCATCTTTCTGCATTCTATTTTCCCTTGATTTTCTTCATTTGTATTTTCACAAACTCGATCAAAAATAAACGTTTTATTAATAAGAATCCACACAAACTTTATCACTTCTATTCCGCCAATATCTTCTTTGCAACCGCCATCATTGCATTCGGGAACATCTCATGTTCCTGAACTTGTATCTTCTGCCGGATTGTTTCGATGGTGTCGCCGTCCTCCACCATGACAGGCCGTTGTGCGATTATATCTCCGTGATCCACCAATTCCTAAAATCACGGATGCATTGATGTGATACTATATTTTTGTGTCTTGTGCTCACGTCAACAAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTCATGTATAGCTGCTCACT</pcr_primer_p1>
		<pcr_primer_p2>CCGATTTTCAGAACAAAATACT</pcr_primer_p2>
		<pcr_amplicon_size>318</pcr_amplicon_size>
		<canonical_amplicon>TGTTCATGTATAGCTGCTCACTATCCCACCATAAAATGTTGTAGGAATGTCCTCACACCGTTGATTTTAAGCTCAATTATCCCGATTTCTATGAAAAATATCAAACATGTGTCAACTGACAAAACACGTCTGACATCACAATAAACATATTACCAGTTGTCAACTTTTTCATATCTTGGACAGGAACTGAGAATAATGGGCTTGAATTTATAAGTTCTACTCCAGGTTTTATCGTATATCCTTTTTTTCCGTGTTTGTATTTCTTGTATCTAAGTTATTTATCTAAGTTTTATCTAAGTATTTTGTTCTGAAAATCGG</canonical_amplicon>
		<polymorphic_amplicon>TGTTCATGTATAGCTGCTCACTATCCCACCATAAAATGTTGTAGGAATGTCCTCACACCGTTGATTTTAAGCTCAATTATCCCGATTTCTATGAAAAATATCAAACATGTGTCAACTGACAAAACACGTCTGACATCACAATAAACATATTACCAGTTGTCAACTTTTTCATATCTTGGACAGGAACTGAGAATAATGGGCTTGAATTTATAAGTTCTACTCCAGGTTTTATCGTATATCCTTYTTTTCCGTGTTTGTATTTCTTGTATCTAAGTTATTTATCTAAGTTTTATCTAAGTATTTTGTTCTGAAAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6849</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>817101</contig_pos>
        <strand>+</strand>
        <context>GAGAGGATAT[C/T]AAAATGTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACGTCGGAAATAGAGTAGGAGTAATATTCTAAGAAACCCGAGAGGATAT</left_flank>
        <right_flank>AAAATGTTCTACGTAAATGTCAAATTTAGATCAGTGAATAAGACATGAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATTAATTTTTCCCCAGTTTACTTTCGTGTTTTTTACCCAGAGCGTGCAATGGGTTTAACCTTCTATCCCGTAAATCACTACTCGTTTCCAATTCCACAACTCATTTTCTCTGAAAAACGGGGCGCGATTAATCGTCAAAACATGAATTGAGTGGGTCAGGGAGCGATTTGTGACGTACTTTTGATGTCTCCTTGGAAAAAAGGGAAATTATTTTTACTCGTTTCTTTGGTTTCATCAAAGAGCAACGTAATAAAAAACTCTCATCATTTTTAATGACTTCAAGTTACTGGGAACGAATTGCAAAATCATTGTTCCAAGGGTTTCATGTTATTTTTAAACACCCTATTACACCTCTCGTTTTGTGTTGTATATGCAAAAAGTGGGTTTCATTGTTTCCGTATAGGAGGATTAGGAATCCCAGAAATGGTTTTGCTTTTGTCATTTTACTACGTCGGAAATAGAGTAGGAGTAATATTCTAAGAAACCCGAGAGGATATCAAAATGTTCTACGTAAATGTCAAATTTAGATCAGTGAATAAGACATGAACCGGGGAGCAATATGGGGTGACAAGAAAGTCTGGAAGAGGGAAAGTTTGACAAAATGCAGATTACTCGGTACAATGATAAACAAGGATGTGACGTCGATAAGCGTTGGAGGTCTCTGCTGTTCAAATTACTACTAATTTCCAATTCGAACCGGATGGCGGAGTTGGGGGTGTAAAATATACATATATCATTTCTCTCTGTCTCCCGGTTCCTAAAAAATAGTCTTTCGGGAATTGAGCTTGATTGAAGTGACGAGAGATATTTGGGTACGGCAGAAGTGTTATCACGTTATCCAATATTTTTTTTATTTCAGCTCAATGTCGTACACAACGCTGTTGACAATACATCTACACGTAACACAAAAGCTGACAATCACAATTTCCGACTGTAGGTAAAATATAGAATAGATTGAAGTAGATGAGATCAAGTTTCATTTAGAGAAATTTCTTTTA</canonical>
            <polymorphic>TCATTAATTTTTCCCCAGTTTACTTTCGTGTTTTTTACCCAGAGCGTGCAATGGGTTTAACCTTCTATCCCGTAAATCACTACTCGTTTCCAATTCCACAACTCATTTTCTCTGAAAAACGGGGCGCGATTAATCGTCAAAACATGAATTGAGTGGGTCAGGGAGCGATTTGTGACGTACTTTTGATGTCTCCTTGGAAAAAAGGGAAATTATTTTTACTCGTTTCTTTGGTTTCATCAAAGAGCAACGTAATAAAAAACTCTCATCATTTTTAATGACTTCAAGTTACTGGGAACGAATTGCAAAATCATTGTTCCAAGGGTTTCATGTTATTTTTAAACACCCTATTACACCTCTCGTTTTGTGTTGTATATGCAAAAAGTGGGTTTCATTGTTTCCGTATAGGAGGATTAGGAATCCCAGAAATGGTTTTGCTTTTGTCATTTTACTACGTCGGAAATAGAGTAGGAGTAATATTCTAAGAAACCCGAGAGGATATYAAAATGTTCTACGTAAATGTCAAATTTAGATCAGTGAATAAGACATGAACCGGGGAGCAATATGGGGTGACAAGAAAGTCTGGAAGAGGGAAAGTTTGACAAAATGCAGATTACTCGGTACAATGATAAACAAGGATGTGACGTCGATAAGCGTTGGAGGTCTCTGCTGTTCAAATTACTACTAATTTCCAATTCGAACCGGATGGCGGAGTTGGGGGTGTAAAATATACATATATCATTTCTCTCTGTCTCCCGGTTCCTAAAAAATAGTCTTTCGGGAATTGAGCTTGATTGAAGTGACGAGAGATATTTGGGTACGGCAGAAGTGTTATCACGTTATCCAATATTTTTTTTATTTCAGCTCAATGTCGTACACAACGCTGTTGACAATACATCTACACGTAACACAAAAGCTGACAATCACAATTTCCGACTGTAGGTAAAATATAGAATAGATTGAAGTAGATGAGATCAAGTTTCATTTAGAGAAATTTCTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGTTTCCGTATAGGAGGATTA</pcr_primer_p1>
		<pcr_primer_p2>ACATCCTTGTTTATCATTGTACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTGTTTCCGTATAGGAGGATTAGGAATCCCAGAAATGGTTTTGCTTTTGTCATTTTACTACGTCGGAAATAGAGTAGGAGTAATATTCTAAGAAACCCGAGAGGATATCAAAATGTTCTACGTAAATGTCAAATTTAGATCAGTGAATAAGACATGAACCGGGGAGCAATATGGGGTGACAAGAAAGTCTGGAAGAGGGAAAGTTTGACAAAATGCAGATTACTCGGTACAATGATAAACAAGGATGT</canonical_amplicon>
		<polymorphic_amplicon>ATTGTTTCCGTATAGGAGGATTAGGAATCCCAGAAATGGTTTTGCTTTTGTCATTTTACTACGTCGGAAATAGAGTAGGAGTAATATTCTAAGAAACCCGAGAGGATATYAAAATGTTCTACGTAAATGTCAAATTTAGATCAGTGAATAAGACATGAACCGGGGAGCAATATGGGGTGACAAGAAAGTCTGGAAGAGGGAAAGTTTGACAAAATGCAGATTACTCGGTACAATGATAAACAAGGATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6850</snp_id>
        <super_contig>c003400901.Contig1</super_contig>
        <contig_pos>20717</contig_pos>
        <strand>+</strand>
        <context>TCTTGAATTT[A/G]AATTCAATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCAATCTGAAACGGAGAAAACAGGATTTCCAGTTAAAATTCTTGAATTT</left_flank>
        <right_flank>AATTCAATTCAATTTTTCCAGATCGTGAAATTCCTGGAATTCCTGGCGTC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTGACATAGAATTTCGCAAAAACCTGACGAAAAATCGCCAATAAATGGTGGAAATTGGCTGAAAATCAGCCGAAAAATGAGTCAGAAATGACTTTTTCGAAGAAAGTTTGAATTTTCGAATCTTTTGGGATTTTTAGATAATTTTAGAAATTTTGAAATTCTAAAACTAAAAATCCGAAAATTGACAAAAGTTGACTGAAAATACCGTAAAACCTGTATTAGAAGGGCCGTCTCTTCCTTCTATTGTTCCAAGGTACCTCCGGAGGGCCCTCATATTAGAGGGGCCCTTCTAATACAGGTTTTACGGTAACCAAAAATGGAAAATTTGAGTCAATTATATTCTGAAGTGTCAAAAATCAAGAAATGAAGTATCCGGCTGTCCGGATGTCCTCGTTTTTTTTTCAAAATTTCAACTACTGAAGGCCAAAAAACCGGCTCCAGAAATGAGCAATCTGAAACGGAGAAAACAGGATTTCCAGTTAAAATTCTTGAATTTAAATTCAATTCAATTTTTCCAGATCGTGAAATTCCTGGAATTCCTGGCGTCGCGAAAATTCCGTAAACTCCCGAATGTCTCGTTCCGCACGCTTCGATTCTCGTCGATTTTCATGCGAGGCGAATGGCAAATCTTCCACGTGGCAGCACTCAAAACCTACTACAACCTGCTGTTCAATTTGCGCTTCGAGGAGTTGCCAGTGTCGACGGATCCAACGATGACGGTCCGAAGCATAATTCGCGAGAACGAGCCGTTCGTTGTCGAGTTGCCAGGTGCGTGGTTTTTTTTCGCGAATTTTTGAGCCAAAAATGAGCGATTTGAAGCTGGAAAGCAGCACTTCCAGAGCCGAAAATTAAGGGGATTTTTGTGAAATTTTAAGCAGAAATATGGAAAAATTATTAAAAATGAGCAATATAGACCTAGAAAACTGAAAAACCGGATTCAAAAAATAAGGGATTTCAGCTAAAATAGCCCTAAATTGGATCTTGAAAAATTAGGTTT</canonical>
            <polymorphic>ATTTTGACATAGAATTTCGCAAAAACCTGACGAAAAATCGCCAATAAATGGTGGAAATTGGCTGAAAATCAGCCGAAAAATGAGTCAGAAATGACTTTTTCGAAGAAAGTTTGAATTTTCGAATCTTTTGGGATTTTTAGATAATTTTAGAAATTTTGAAATTCTAAAACTAAAAATCCGAAAATTGACAAAAGTTGACTGAAAATACCGTAAAACCTGTATTAGAAGGGCCGTCTCTTCCTTCTATTGTTCCAAGGTACCTCCGGAGGGCCCTCATATTAGAGGGGCCCTTCTAATACAGGTTTTACGGTAACCAAAAATGGAAAATTTGAGTCAATTATATTCTGAAGTGTCAAAAATCAAGAAATGAAGTATCCGGCTGTCCGGATGTCCTCGTTTTTTTTTCAAAATTTCAACTACTGAAGGCCAAAAAACCGGCTCCAGAAATGAGCAATCTGAAACGGAGAAAACAGGATTTCCAGTTAAAATTCTTGAATTTRAATTCAATTCAATTTTTCCAGATCGTGAAATTCCTGGAATTCCTGGCGTCGCGAAAATTCCGTAAACTCCCGAATGTCTCGTTCCGCACGCTTCGATTCTCGTCGATTTTCATGCGAGGCGAATGGCAAATCTTCCACGTGGCAGCACTCAAAACCTACTACAACCTGCTGTTCAATTTGCGCTTCGAGGAGTTGCCAGTGTCGACGGATCCAACGATGACGGTCCGAAGCATAATTCGCGAGAACGAGCCGTTCGTTGTCGAGTTGCCAGGTGCGTGGTTTTTTTTCGCGAATTTTTGAGCCAAAAATGAGCGATTTGAAGCTGGAAAGCAGCACTTCCAGAGCCGAAAATTAAGGGGATTTTTGTGAAATTTTAAGCAGAAATATGGAAAAATTATTAAAAATGAGCAATATAGACCTAGAAAACTGAAAAACCGGATTCAAAAAATAAGGGATTTCAGCTAAAATAGCCCTAAATTGGATCTTGAAAAATTAGGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>236 166 131 101 83 78 78 38 28 18 12 9 8 8 6</canonical_bands>
                <polymorphic_bands>236 166 131 101 83 78 78 38 34 18 12 9 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>483 354 102 24 22 15</canonical_bands>
                <polymorphic_bands>483 369 102 24 22</polymorphic_bands>
            </assay>
            <assay>
                <site>ATTTAAAT</site>
                <isoschizomers>
                    <enzyme>SmiI</enzyme>
                    <enzyme>SwaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAAATGAGCAATCTGAAAC</pcr_primer_p1>
		<pcr_primer_p2>AATTGAACAGCAGGTTGTAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CAGAAATGAGCAATCTGAAACGGAGAAAACAGGATTTCCAGTTAAAATTCTTGAATTTAAATTCAATTCAATTTTTCCAGATCGTGAAATTCCTGGAATTCCTGGCGTCGCGAAAATTCCGTAAACTCCCGAATGTCTCGTTCCGCACGCTTCGATTCTCGTCGATTTTCATGCGAGGCGAATGGCAAATCTTCCACGTGGCAGCACTCAAAACCTACTACAACCTGCTGTTCAATT</canonical_amplicon>
		<polymorphic_amplicon>CAGAAATGAGCAATCTGAAACGGAGAAAACAGGATTTCCAGTTAAAATTCTTGAATTTRAATTCAATTCAATTTTTCCAGATCGTGAAATTCCTGGAATTCCTGGCGTCGCGAAAATTCCGTAAACTCCCGAATGTCTCGTTCCGCACGCTTCGATTCTCGTCGATTTTCATGCGAGGCGAATGGCAAATCTTCCACGTGGCAGCACTCAAAACCTACTACAACCTGCTGTTCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6851</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>44806</contig_pos>
        <strand>+</strand>
        <context>ACGAGGACTA[A/C]GGTAGGTTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGCAATTCAATCACCCACACAATTAAAAAGGAGAAAATGGACGAGGACTA</left_flank>
        <right_flank>GGTAGGTTATATGGGCTCTTTGCATGACATTTTTTGTGGTGAAAATTGCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTTCTTTTTCGGGTTCTATACCTCTCCTTCCTCTTCTCCTCTCATTTCTAAATACGTCGTCCACCTGTTCTGAATACTTAAAAACGCATTAAATAGGTCAGTTCAATTGACATATAAGGTATCCAGCTGTGCTGGCGGATTTGTGTTGTTTTGTTCACTTCAAGTAGTATGTGATTTCATTTCTAGATGTTATGATTAATTGAAAATTTCCGTTCAGGAAAAACAAATTTAAGAATTCGTAAACATTTTAGGTCTTGAGTGTTGTAAGCATTTCAGAATTTGTTCGAACTTTTTGGGTGTCGTATTTTGAACTGTTAGCTTCACATCAAGCAGGACCCATTTGGAAAAACCTCAACTTCTTCAAAATTCAGAAATCGCGGGTTACTGTAGTTGATGGGTCAATCACCACTCAAATCTAGAAGGAGGATTACTGTAGAAGAAGCGTCGGCAATTCAATCACCCACACAATTAAAAAGGAGAAAATGGACGAGGACTACGGTAGGTTATATGGGCTCTTTGCATGACATTTTTTGTGGTGAAAATTGCAGTGAGATATAAATTAAAAAAAAACATAATTGAAAGTCATATTAGTAGGAATTCGGACTTCGCGTCACTTCGAAACCGCGACACTTCGAAACCAGCCATTTCGAAGCCGGTCATTTCGAAACCTAGGTAATTCAGGCGAATGGACGAACTACAGACTACAAAAACAATTTTAGGGTTCTCAAATGTGCTTTTTCTGATAGAAAAATACTGAAACTTTAAAAATTCCCAAAAATTTTTTTGAAAAAATTAATTTTGGATTTTTTCCGAATTTCCAAATGTGTTCCATCAGAAAAAGTATATCTGAAAATCATCAAATCTGAATTCAAAATTTCGAACAAAAAGAATATAAAGAAACAATTCAAAATCTTTCGTCTGCTCAGGTAAATTGGAAAACCATTCTGAGCAACATTTGAGCAATTCTGAAACCTTTTCAAGCAAAAAGTCCACGATT</canonical>
            <polymorphic>TTTCTTCTTTTTCGGGTTCTATACCTCTCCTTCCTCTTCTCCTCTCATTTCTAAATACGTCGTCCACCTGTTCTGAATACTTAAAAACGCATTAAATAGGTCAGTTCAATTGACATATAAGGTATCCAGCTGTGCTGGCGGATTTGTGTTGTTTTGTTCACTTCAAGTAGTATGTGATTTCATTTCTAGATGTTATGATTAATTGAAAATTTCCGTTCAGGAAAAACAAATTTAAGAATTCGTAAACATTTTAGGTCTTGAGTGTTGTAAGCATTTCAGAATTTGTTCGAACTTTTTGGGTGTCGTATTTTGAACTGTTAGCTTCACATCAAGCAGGACCCATTTGGAAAAACCTCAACTTCTTCAAAATTCAGAAATCGCGGGTTACTGTAGTTGATGGGTCAATCACCACTCAAATCTAGAAGGAGGATTACTGTAGAAGAAGCGTCGGCAATTCAATCACCCACACAATTAAAAAGGAGAAAATGGACGAGGACTAMGGTAGGTTATATGGGCTCTTTGCATGACATTTTTTGTGGTGAAAATTGCAGTGAGATATAAATTAAAAAAAAACATAATTGAAAGTCATATTAGTAGGAATTCGGACTTCGCGTCACTTCGAAACCGCGACACTTCGAAACCAGCCATTTCGAAGCCGGTCATTTCGAAACCTAGGTAATTCAGGCGAATGGACGAACTACAGACTACAAAAACAATTTTAGGGTTCTCAAATGTGCTTTTTCTGATAGAAAAATACTGAAACTTTAAAAATTCCCAAAAATTTTTTTGAAAAAATTAATTTTGGATTTTTTCCGAATTTCCAAATGTGTTCCATCAGAAAAAGTATATCTGAAAATCATCAAATCTGAATTCAAAATTTCGAACAAAAAGAATATAAAGAAACAATTCAAAATCTTTCGTCTGCTCAGGTAAATTGGAAAACCATTCTGAGCAACATTTGAGCAATTCTGAAACCTTTTCAAGCAAAAAGTCCACGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>499 316 73 66 46</canonical_bands>
                <polymorphic_bands>565 316 73 46</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAACTGTTAGCTTCACATCAA</pcr_primer_p1>
		<pcr_primer_p2>TATATCTCACTGCAATTTTCACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAACTGTTAGCTTCACATCAAGCAGGACCCATTTGGAAAAACCTCAACTTCTTCAAAATTCAGAAATCGCGGGTTACTGTAGTTGATGGGTCAATCACCACTCAAATCTAGAAGGAGGATTACTGTAGAAGAAGCGTCGGCAATTCAATCACCCACACAATTAAAAAGGAGAAAATGGACGAGGACTACGGTAGGTTATATGGGCTCTTTGCATGACATTTTTTGTGGTGAAAATTGCAGTGAGATATA</canonical_amplicon>
		<polymorphic_amplicon>TGAACTGTTAGCTTCACATCAAGCAGGACCCATTTGGAAAAACCTCAACTTCTTCAAAATTCAGAAATCGCGGGTTACTGTAGTTGATGGGTCAATCACCACTCAAATCTAGAAGGAGGATTACTGTAGAAGAAGCGTCGGCAATTCAATCACCCACACAATTAAAAAGGAGAAAATGGACGAGGACTAMGGTAGGTTATATGGGCTCTTTGCATGACATTTTTTGTGGTGAAAATTGCAGTGAGATATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6852</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>44894</contig_pos>
        <strand></strand>
        <context>ATTGAAAGTC[A/G]TATTAGTAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTGAAAATTGCAGTGAGATATAAATTAAAAAAAAACATAATTGAAAGTC</left_flank>
        <right_flank>TATTAGTAGGAATTCGGACTTCGCGTCACTTCGAAACCGCGACACTTCGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATTAAATAGGTCAGTTCAATTGACATATAAGGTATCCAGCTGTGCTGGCGGATTTGTGTTGTTTTGTTCACTTCAAGTAGTATGTGATTTCATTTCTAGATGTTATGATTAATTGAAAATTTCCGTTCAGGAAAAACAAATTTAAGAATTCGTAAACATTTTAGGTCTTGAGTGTTGTAAGCATTTCAGAATTTGTTCGAACTTTTTGGGTGTCGTATTTTGAACTGTTAGCTTCACATCAAGCAGGACCCATTTGGAAAAACCTCAACTTCTTCAAAATTCAGAAATCGCGGGTTACTGTAGTTGATGGGTCAATCACCACTCAAATCTAGAAGGAGGATTACTGTAGAAGAAGCGTCGGCAATTCAATCACCCACACAATTAAAAAGGAGAAAATGGACGAGGACTACGGTAGGTTATATGGGCTCTTTGCATGACATTTTTTGTGGTGAAAATTGCAGTGAGATATAAATTAAAAAAAAACATAATTGAAAGTCATATTAGTAGGAATTCGGACTTCGCGTCACTTCGAAACCGCGACACTTCGAAACCAGCCATTTCGAAGCCGGTCATTTCGAAACCTAGGTAATTCAGGCGAATGGACGAACTACAGACTACAAAAACAATTTTAGGGTTCTCAAATGTGCTTTTTCTGATAGAAAAATACTGAAACTTTAAAAATTCCCAAAAATTTTTTTGAAAAAATTAATTTTGGATTTTTTCCGAATTTCCAAATGTGTTCCATCAGAAAAAGTATATCTGAAAATCATCAAATCTGAATTCAAAATTTCGAACAAAAAGAATATAAAGAAACAATTCAAAATCTTTCGTCTGCTCAGGTAAATTGGAAAACCATTCTGAGCAACATTTGAGCAATTCTGAAACCTTTTCAAGCAAAAAGTCCACGATTAAACTTTTTCAAGCCACAATCAAACTTTTCAAACTTTTCTAAGCAACTTGTAAACTTTATCCAGCTGCGCTCGAAACTGAAACTTTTT</canonical>
            <polymorphic>GCATTAAATAGGTCAGTTCAATTGACATATAAGGTATCCAGCTGTGCTGGCGGATTTGTGTTGTTTTGTTCACTTCAAGTAGTATGTGATTTCATTTCTAGATGTTATGATTAATTGAAAATTTCCGTTCAGGAAAAACAAATTTAAGAATTCGTAAACATTTTAGGTCTTGAGTGTTGTAAGCATTTCAGAATTTGTTCGAACTTTTTGGGTGTCGTATTTTGAACTGTTAGCTTCACATCAAGCAGGACCCATTTGGAAAAACCTCAACTTCTTCAAAATTCAGAAATCGCGGGTTACTGTAGTTGATGGGTCAATCACCACTCAAATCTAGAAGGAGGATTACTGTAGAAGAAGCGTCGGCAATTCAATCACCCACACAATTAAAAAGGAGAAAATGGACGAGGACTACGGTAGGTTATATGGGCTCTTTGCATGACATTTTTTGTGGTGAAAATTGCAGTGAGATATAAATTAAAAAAAAACATAATTGAAAGTCRTATTAGTAGGAATTCGGACTTCGCGTCACTTCGAAACCGCGACACTTCGAAACCAGCCATTTCGAAGCCGGTCATTTCGAAACCTAGGTAATTCAGGCGAATGGACGAACTACAGACTACAAAAACAATTTTAGGGTTCTCAAATGTGCTTTTTCTGATAGAAAAATACTGAAACTTTAAAAATTCCCAAAAATTTTTTTGAAAAAATTAATTTTGGATTTTTTCCGAATTTCCAAATGTGTTCCATCAGAAAAAGTATATCTGAAAATCATCAAATCTGAATTCAAAATTTCGAACAAAAAGAATATAAAGAAACAATTCAAAATCTTTCGTCTGCTCAGGTAAATTGGAAAACCATTCTGAGCAACATTTGAGCAATTCTGAAACCTTTTCAAGCAAAAAGTCCACGATTAAACTTTTTCAAGCCACAATCAAACTTTTCAAACTTTTCTAAGCAACTTGTAAACTTTATCCAGCTGCGCTCGAAACTGAAACTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACACAATTAAAAAGGAGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGTAGTCTGTAGTTCGTCCATTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACACAATTAAAAAGGAGAAAATGGACGAGGACTACGGTAGGTTATATGGGCTCTTTGCATGACATTTTTTGTGGTGAAAATTGCAGTGAGATATAAATTAAAAAAAAACATAATTGAAAGTCATATTAGTAGGAATTCGGACTTCGCGTCACTTCGAAACCGCGACACTTCGAAACCAGCCATTTCGAAGCCGGTCATTTCGAAACCTAGGTAATTCAGGCGAATGGACGAACTACAGACTACA</canonical_amplicon>
		<polymorphic_amplicon>CACACAATTAAAAAGGAGAAAATGGACGAGGACTACGGTAGGTTATATGGGCTCTTTGCATGACATTTTTTGTGGTGAAAATTGCAGTGAGATATAAATTAAAAAAAAACATAATTGAAAGTCRTATTAGTAGGAATTCGGACTTCGCGTCACTTCGAAACCGCGACACTTCGAAACCAGCCATTTCGAAGCCGGTCATTTCGAAACCTAGGTAATTCAGGCGAATGGACGAACTACAGACTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6876</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>53519</contig_pos>
        <strand>+</strand>
        <context>CATTAACCGC[C/T]TCCGCGTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATTTGCCGTTTATTCTCACACATTTTTTGAATTAACTACCATTAACCGC</left_flank>
        <right_flank>TCCGCGTTTCTGTCTCCCGAGTTTGAAAGTTGTTTTACACTCATTTACTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATACATTGTCTCCTGCGTAGACGACACTCCTCTATGGCTTTTTATCTTTGATTCAGTTCCCCTTCTCGGTGGTAATCCCCAACACCTACATTTTTGAATTTATTTTTCTAAATTTTTGAAAAACAGAAGAACCCATTTTTAAAATGTGTGCGTTCTAACGTGGCGGTGTTTGCGTACAAACAAGTCGGCTGAAAATTTTTCAAGTTGCCTTCCTTCAAAAAATAATTTTATCCCCCAAATCCAGTTTTTGATTTACTTTTTTGACTTAAAATAAAAAAAAGCAAAAATTTTTTATTAGCAACATTTACCTTCAAAAAAACGATTGAAAATTTGTGTTTGACCTGCACAATATTTGCTCTACCCCCTTTATACTGTCACCCGCGAACACACAGTTAAGCGCGAGCGGCGCTCTCTATTCTCCTCCAATATTCCCCGCTCCCTTCTCATCTCATTTGCCGTTTATTCTCACACATTTTTTGAATTAACTACCATTAACCGCTTCCGCGTTTCTGTCTCCCGAGTTTGAAAGTTGTTTTACACTCATTTACTCCTGTTTTTTTTTCAGTCAGCGCTGCCTGTAAGACCCGACAAGTCGGCAGCAATGCTCACGCTTCTGGAGCCGCCCGGGGCGAAAAGATCCCCGAATGTCGGCAATTACAACAACAGATCGGCTCAACACTTGTTAAATCTAGGTAAAAAAAATAAAAATAAAAAATCCGCACACGAAAAACCCATTTTTTCAGCTCCAGACGAAGAAGATTTATATGAAACATACGACGAGAATGAGGACTATGCGGAGAACGAAAGAACTGGTAATATCCTGACCAGGGTAAGTAAATTGAAATTTCAAAGCTATTTACTAACTGAAATAGTAGACATTTCAGTTTCTGGACCGGTACCTCGTCGGACAATCATCATCTGCCGATTACAATGATCGATGGAAACGGGAATTTCGTGCGAGGCCCTCATGGTGCGATGCTGATTTGTGTCTGCAACAAAT</canonical>
            <polymorphic>ATACATTGTCTCCTGCGTAGACGACACTCCTCTATGGCTTTTTATCTTTGATTCAGTTCCCCTTCTCGGTGGTAATCCCCAACACCTACATTTTTGAATTTATTTTTCTAAATTTTTGAAAAACAGAAGAACCCATTTTTAAAATGTGTGCGTTCTAACGTGGCGGTGTTTGCGTACAAACAAGTCGGCTGAAAATTTTTCAAGTTGCCTTCCTTCAAAAAATAATTTTATCCCCCAAATCCAGTTTTTGATTTACTTTTTTGACTTAAAATAAAAAAAAGCAAAAATTTTTTATTAGCAACATTTACCTTCAAAAAAACGATTGAAAATTTGTGTTTGACCTGCACAATATTTGCTCTACCCCCTTTATACTGTCACCCGCGAACACACAGTTAAGCGCGAGCGGCGCTCTCTATTCTCCTCCAATATTCCCCGCTCCCTTCTCATCTCATTTGCCGTTTATTCTCACACATTTTTTGAATTAACTACCATTAACCGCYTCCGCGTTTCTGTCTCCCGAGTTTGAAAGTTGTTTTACACTCATTTACTCCTGTTTTTTTTTCAGTCAGCGCTGCCTGTAAGACCCGACAAGTCGGCAGCAATGCTCACGCTTCTGGAGCCGCCCGGGGCGAAAAGATCCCCGAATGTCGGCAATTACAACAACAGATCGGCTCAACACTTGTTAAATCTAGGTAAAAAAAATAAAAATAAAAAATCCGCACACGAAAAACCCATTTTTTCAGCTCCAGACGAAGAAGATTTATATGAAACATACGACGAGAATGAGGACTATGCGGAGAACGAAAGAACTGGTAATATCCTGACCAGGGTAAGTAAATTGAAATTTCAAAGCTATTTACTAACTGAAATAGTAGACATTTCAGTTTCTGGACCGGTACCTCGTCGGACAATCATCATCTGCCGATTACAATGATCGATGGAAACGGGAATTTCGTGCGAGGCCCTCATGGTGCGATGCTGATTTGTGTCTGCAACAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACGATTGAAAATTTGTGT</pcr_primer_p1>
		<pcr_primer_p2>AAAAACAGGAGTAAATGAGTGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAAAACGATTGAAAATTTGTGTTTGACCTGCACAATATTTGCTCTACCCCCTTTATACTGTCACCCGCGAACACACAGTTAAGCGCGAGCGGCGCTCTCTATTCTCCTCCAATATTCCCCGCTCCCTTCTCATCTCATTTGCCGTTTATTCTCACACATTTTTTGAATTAACTACCATTAACCGCTTCCGCGTTTCTGTCTCCCGAGTTTGAAAGTTGTTTTACACTCATTTACTCCTGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAACGATTGAAAATTTGTGTTTGACCTGCACAATATTTGCTCTACCCCCTTTATACTGTCACCCGCGAACACACAGTTAAGCGCGAGCGGCGCTCTCTATTCTCCTCCAATATTCCCCGCTCCCTTCTCATCTCATTTGCCGTTTATTCTCACACATTTTTTGAATTAACTACCATTAACCGCYTCCGCGTTTCTGTCTCCCGAGTTTGAAAGTTGTTTTACACTCATTTACTCCTGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6877</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>127991</contig_pos>
        <strand>+</strand>
        <context>AAGCTATCAT[A/C]TCATGTCCGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCAAAAAAATCTGAAAGTTCACAAGTAATCAGAAATTTCAAGCTATCAT</left_flank>
        <right_flank>TCATGTCCGTAGGTTCTAGAGTTCGATTTTGAAAAATATACTGTCTGGTG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGAAATTCAGTCACTGAATCCTATAATGTACAATAAGAAAAAGAAAATACGTATTGAAAATTTTCGAAGAAAAAACACTACTATTTCCATTCATCAAATTATCCAATTATGCCATTGGATTGAGGAGAAAAGGTCTATTACACCACGAGGAAAAGGATACAATAGAGGATCAGCTGGAAACCTGTCTGAACGAAAATAGTGTTGGATTTGAGGGAGACGCAGAGACAACTGAGAATAGTTTTTTGTACAAAAGATCAGTAGAATACAGTAGAATGAAGCTGCCTTTTCACTGGTATAAAACTAAAGTTAAAACCGAAAAATGGCAGAATGTTCTCTCATGCTGAGCCGATTTTTAGAGGAGGCGAGGGTGGGAATCATGATTTACATAATCCTTGCTACTGAACATGAGTTCTATGATCATCGTCTGATATTTTGGAAAGAAAAGCGTTCAAAAAAATCTGAAAGTTCACAAGTAATCAGAAATTTCAAGCTATCATCTCATGTCCGTAGGTTCTAGAGTTCGATTTTGAAAAATATACTGTCTGGTGTCAATTTTTTGGTAGGAAAATGTGACAATTGAACCTAAAAAAAGGAGATAAAAAATTAGAGAAAAGAACAAAATGAAAAAATAATTCAGAAGATCTGGGGAAAATGATGCGAAATTGGGCGATTTTTGTGTCGATTTAGGCACTCGTCTCTCCGGTTTCTCCGTCCTTGCCACCGAGAGCACGTTATTGCCTCTGAAAATTTGGTATTTTAAAATCAAAAATACACAAAAAATGATCTAAAATTTATTAAAAATGGCACAAACAGGCTCAAAATGGTCCAAAATTCACTAAAAAATGACCAAAATTTTGCTAACACAAACCACAATTGACCGAAAGTGGTCTAAAATGAACATTTAATCCATCCACTACCAAATCGGAAATCTAGAACCGTAGGGATCTCTCGAAAACTTTTTCAATGTTCTGGTTTCAGGAAAACAACCACATGGTGCC</canonical>
            <polymorphic>ACTGAAATTCAGTCACTGAATCCTATAATGTACAATAAGAAAAAGAAAATACGTATTGAAAATTTTCGAAGAAAAAACACTACTATTTCCATTCATCAAATTATCCAATTATGCCATTGGATTGAGGAGAAAAGGTCTATTACACCACGAGGAAAAGGATACAATAGAGGATCAGCTGGAAACCTGTCTGAACGAAAATAGTGTTGGATTTGAGGGAGACGCAGAGACAACTGAGAATAGTTTTTTGTACAAAAGATCAGTAGAATACAGTAGAATGAAGCTGCCTTTTCACTGGTATAAAACTAAAGTTAAAACCGAAAAATGGCAGAATGTTCTCTCATGCTGAGCCGATTTTTAGAGGAGGCGAGGGTGGGAATCATGATTTACATAATCCTTGCTACTGAACATGAGTTCTATGATCATCGTCTGATATTTTGGAAAGAAAAGCGTTCAAAAAAATCTGAAAGTTCACAAGTAATCAGAAATTTCAAGCTATCATMTCATGTCCGTAGGTTCTAGAGTTCGATTTTGAAAAATATACTGTCTGGTGTCAATTTTTTGGTAGGAAAATGTGACAATTGAACCTAAAAAAAGGAGATAAAAAATTAGAGAAAAGAACAAAATGAAAAAATAATTCAGAAGATCTGGGGAAAATGATGCGAAATTGGGCGATTTTTGTGTCGATTTAGGCACTCGTCTCTCCGGTTTCTCCGTCCTTGCCACCGAGAGCACGTTATTGCCTCTGAAAATTTGGTATTTTAAAATCAAAAATACACAAAAAATGATCTAAAATTTATTAAAAATGGCACAAACAGGCTCAAAATGGTCCAAAATTCACTAAAAAATGACCAAAATTTTGCTAACACAAACCACAATTGACCGAAAGTGGTCTAAAATGAACATTTAATCCATCCACTACCAAATCGGAAATCTAGAACCGTAGGGATCTCTCGAAAACTTTTTCAATGTTCTGGTTTCAGGAAAACAACCACATGGTGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATAATCCTTGCTACTGAACAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCATTTTGTTCTTTTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACATAATCCTTGCTACTGAACATGAGTTCTATGATCATCGTCTGATATTTTGGAAAGAAAAGCGTTCAAAAAAATCTGAAAGTTCACAAGTAATCAGAAATTTCAAGCTATCATCTCATGTCCGTAGGTTCTAGAGTTCGATTTTGAAAAATATACTGTCTGGTGTCAATTTTTTGGTAGGAAAATGTGACAATTGAACCTAAAAAAAGGAGATAAAAAATTAGAGAAAAGAACAAAATGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACATAATCCTTGCTACTGAACATGAGTTCTATGATCATCGTCTGATATTTTGGAAAGAAAAGCGTTCAAAAAAATCTGAAAGTTCACAAGTAATCAGAAATTTCAAGCTATCATMTCATGTCCGTAGGTTCTAGAGTTCGATTTTGAAAAATATACTGTCTGGTGTCAATTTTTTGGTAGGAAAATGTGACAATTGAACCTAAAAAAAGGAGATAAAAAATTAGAGAAAAGAACAAAATGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6879</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>204331</contig_pos>
        <strand>+</strand>
        <context>AATGAAAACG[A/G]ACGGAATATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTATATTTGTTATTTTATAACTTTAAGCAATTAGATTTGAATGAAAACG</left_flank>
        <right_flank>ACGGAATATCAAATTAGAAGAAAAAGAGCTTAGCGCATTCGTTGCAAATA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCATTAGTCAATCCGAACAAAGTAGTAGTTGTGTGAGAGAAGTCAATAACATCAAAATCAATAGCCGTTTCCTTGGTTTCGCATATAAACTGATATTCGCAGGGATTTAAATGAATTCGTCGCAAGAAACGCGCAAATGGTGTCTGGCGGCGCGCCAGTAAAAAGGAAGGCACATTACTCGATCTGGAATCAGGCTGGATCCAGTAACGCTTCTGATATGTTATCACCTGATGACGTGTTTTCATCTGATTGAGACTGTCTGGAAATTTTTCGTTAAAGTATTTATAATTTGTAAAACCTGAATATAAGTGAATTCAGGAAAATAGTTATTGATCGAAATCCAGAGAATTTCAGCAAGAATTTCGGCAATGTTTCCAATGAAATTAGAAATTCCCTCTTATTATGCCAGAATTGAGTGTTTTTGAGCACTCTTGGGTGGCTGGACTTTTTTATATTTGTTATTTTATAACTTTAAGCAATTAGATTTGAATGAAAACGAACGGAATATCAAATTAGAAGAAAAAGAGCTTAGCGCATTCGTTGCAAATATTTCAGTGACCGTAACCACTATTTAAGGCGCAATCCGAGCTCCTCAAAATGTATCAAAACTGTAACGTCCTTTAAAGTACGGTAATTGAAATTTTTATCGCAGTAAACACTGAAATTTGAGCTTTTTCGATATTATTCAAATTATTCAAACACTAATATCTCTATGAACGGAGGTTTTCTGATTAATGAGTTGATTACCATTCGTTTTCCGTTTTTGGAGCATTTATCTTTTTGTTCATACATTTTTCATTAACACAATTTTCTCATTTTTCTCTTGCGAAACGCTGTTTACCAATCTTTCTTTCTCTGTCGCGAAGCTCTCCGAAGAAAAACATCTTTCTATTCCTCTATCGACCCTTCTCCGTTATTTCCTCATCTCTTCTTTTTTTTCAGTCCAGGTTTTTTTTTTCAGTTTGATATGGAGCGAGCAGGACGCTCTTCAACGCTCGG</canonical>
            <polymorphic>CGCATTAGTCAATCCGAACAAAGTAGTAGTTGTGTGAGAGAAGTCAATAACATCAAAATCAATAGCCGTTTCCTTGGTTTCGCATATAAACTGATATTCGCAGGGATTTAAATGAATTCGTCGCAAGAAACGCGCAAATGGTGTCTGGCGGCGCGCCAGTAAAAAGGAAGGCACATTACTCGATCTGGAATCAGGCTGGATCCAGTAACGCTTCTGATATGTTATCACCTGATGACGTGTTTTCATCTGATTGAGACTGTCTGGAAATTTTTCGTTAAAGTATTTATAATTTGTAAAACCTGAATATAAGTGAATTCAGGAAAATAGTTATTGATCGAAATCCAGAGAATTTCAGCAAGAATTTCGGCAATGTTTCCAATGAAATTAGAAATTCCCTCTTATTATGCCAGAATTGAGTGTTTTTGAGCACTCTTGGGTGGCTGGACTTTTTTATATTTGTTATTTTATAACTTTAAGCAATTAGATTTGAATGAAAACGRACGGAATATCAAATTAGAAGAAAAAGAGCTTAGCGCATTCGTTGCAAATATTTCAGTGACCGTAACCACTATTTAAGGCGCAATCCGAGCTCCTCAAAATGTATCAAAACTGTAACGTCCTTTAAAGTACGGTAATTGAAATTTTTATCGCAGTAAACACTGAAATTTGAGCTTTTTCGATATTATTCAAATTATTCAAACACTAATATCTCTATGAACGGAGGTTTTCTGATTAATGAGTTGATTACCATTCGTTTTCCGTTTTTGGAGCATTTATCTTTTTGTTCATACATTTTTCATTAACACAATTTTCTCATTTTTCTCTTGCGAAACGCTGTTTACCAATCTTTCTTTCTCTGTCGCGAAGCTCTCCGAAGAAAAACATCTTTCTATTCCTCTATCGACCCTTCTCCGTTATTTCCTCATCTCTTCTTTTTTTTCAGTCCAGGTTTTTTTTTTCAGTTTGATATGGAGCGAGCAGGACGCTCTTCAACGCTCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAAATTAGAAATTCCCTCTT</pcr_primer_p1>
		<pcr_primer_p2>CTTTAAAGGACGTTACAGTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATGAAATTAGAAATTCCCTCTTATTATGCCAGAATTGAGTGTTTTTGAGCACTCTTGGGTGGCTGGACTTTTTTATATTTGTTATTTTATAACTTTAAGCAATTAGATTTGAATGAAAACGAACGGAATATCAAATTAGAAGAAAAAGAGCTTAGCGCATTCGTTGCAAATATTTCAGTGACCGTAACCACTATTTAAGGCGCAATCCGAGCTCCTCAAAATGTATCAAAACTGTAACGTCCTTTAAAG</canonical_amplicon>
		<polymorphic_amplicon>AATGAAATTAGAAATTCCCTCTTATTATGCCAGAATTGAGTGTTTTTGAGCACTCTTGGGTGGCTGGACTTTTTTATATTTGTTATTTTATAACTTTAAGCAATTAGATTTGAATGAAAACGRACGGAATATCAAATTAGAAGAAAAAGAGCTTAGCGCATTCGTTGCAAATATTTCAGTGACCGTAACCACTATTTAAGGCGCAATCCGAGCTCCTCAAAATGTATCAAAACTGTAACGTCCTTTAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6880</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>204488</contig_pos>
        <strand>+</strand>
        <context>ATCGCAGTAA[A/C]CACTGAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAACTGTAACGTCCTTTAAAGTACGGTAATTGAAATTTTTATCGCAGTAA</left_flank>
        <right_flank>CACTGAAATTTGAGCTTTTTCGATATTATTCAAATTATTCAAACACTAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTAAAAAGGAAGGCACATTACTCGATCTGGAATCAGGCTGGATCCAGTAACGCTTCTGATATGTTATCACCTGATGACGTGTTTTCATCTGATTGAGACTGTCTGGAAATTTTTCGTTAAAGTATTTATAATTTGTAAAACCTGAATATAAGTGAATTCAGGAAAATAGTTATTGATCGAAATCCAGAGAATTTCAGCAAGAATTTCGGCAATGTTTCCAATGAAATTAGAAATTCCCTCTTATTATGCCAGAATTGAGTGTTTTTGAGCACTCTTGGGTGGCTGGACTTTTTTATATTTGTTATTTTATAACTTTAAGCAATTAGATTTGAATGAAAACGAACGGAATATCAAATTAGAAGAAAAAGAGCTTAGCGCATTCGTTGCAAATATTTCAGTGACCGTAACCACTATTTAAGGCGCAATCCGAGCTCCTCAAAATGTATCAAAACTGTAACGTCCTTTAAAGTACGGTAATTGAAATTTTTATCGCAGTAAACACTGAAATTTGAGCTTTTTCGATATTATTCAAATTATTCAAACACTAATATCTCTATGAACGGAGGTTTTCTGATTAATGAGTTGATTACCATTCGTTTTCCGTTTTTGGAGCATTTATCTTTTTGTTCATACATTTTTCATTAACACAATTTTCTCATTTTTCTCTTGCGAAACGCTGTTTACCAATCTTTCTTTCTCTGTCGCGAAGCTCTCCGAAGAAAAACATCTTTCTATTCCTCTATCGACCCTTCTCCGTTATTTCCTCATCTCTTCTTTTTTTTCAGTCCAGGTTTTTTTTTTCAGTTTGATATGGAGCGAGCAGGACGCTCTTCAACGCTCGGCTCTTCAGATGAAGTCGAGTTGGAGCCCAGTGGAAATTCTGCCACGATACATCTTGATATGACTGCAGGTGACCGAATAGAGAACTACCCACGATGAACGGTCATAATGTGAACTGAACTTTCTAGGTGGCGGCAGCTCTTCCAGCGACTTCAACCC</canonical>
            <polymorphic>AGTAAAAAGGAAGGCACATTACTCGATCTGGAATCAGGCTGGATCCAGTAACGCTTCTGATATGTTATCACCTGATGACGTGTTTTCATCTGATTGAGACTGTCTGGAAATTTTTCGTTAAAGTATTTATAATTTGTAAAACCTGAATATAAGTGAATTCAGGAAAATAGTTATTGATCGAAATCCAGAGAATTTCAGCAAGAATTTCGGCAATGTTTCCAATGAAATTAGAAATTCCCTCTTATTATGCCAGAATTGAGTGTTTTTGAGCACTCTTGGGTGGCTGGACTTTTTTATATTTGTTATTTTATAACTTTAAGCAATTAGATTTGAATGAAAACGAACGGAATATCAAATTAGAAGAAAAAGAGCTTAGCGCATTCGTTGCAAATATTTCAGTGACCGTAACCACTATTTAAGGCGCAATCCGAGCTCCTCAAAATGTATCAAAACTGTAACGTCCTTTAAAGTACGGTAATTGAAATTTTTATCGCAGTAAMCACTGAAATTTGAGCTTTTTCGATATTATTCAAATTATTCAAACACTAATATCTCTATGAACGGAGGTTTTCTGATTAATGAGTTGATTACCATTCGTTTTCCGTTTTTGGAGCATTTATCTTTTTGTTCATACATTTTTCATTAACACAATTTTCTCATTTTTCTCTTGCGAAACGCTGTTTACCAATCTTTCTTTCTCTGTCGCGAAGCTCTCCGAAGAAAAACATCTTTCTATTCCTCTATCGACCCTTCTCCGTTATTTCCTCATCTCTTCTTTTTTTTCAGTCCAGGTTTTTTTTTTCAGTTTGATATGGAGCGAGCAGGACGCTCTTCAACGCTCGGCTCTTCAGATGAAGTCGAGTTGGAGCCCAGTGGAAATTCTGCCACGATACATCTTGATATGACTGCAGGTGACCGAATAGAGAACTACCCACGATGAACGGTCATAATGTGAACTGAACTTTCTAGGTGGCGGCAGCTCTTCCAGCGACTTCAACCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 272 184 46</canonical_bands>
                <polymorphic_bands>682 272 46</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGAATATCAAATTAGAAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TCAACTCATTAATCAGAAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CGGAATATCAAATTAGAAGAAAAAGAGCTTAGCGCATTCGTTGCAAATATTTCAGTGACCGTAACCACTATTTAAGGCGCAATCCGAGCTCCTCAAAATGTATCAAAACTGTAACGTCCTTTAAAGTACGGTAATTGAAATTTTTATCGCAGTAAACACTGAAATTTGAGCTTTTTCGATATTATTCAAATTATTCAAACACTAATATCTCTATGAACGGAGGTTTTCTGATTAATGAGTTGA</canonical_amplicon>
		<polymorphic_amplicon>CGGAATATCAAATTAGAAGAAAAAGAGCTTAGCGCATTCGTTGCAAATATTTCAGTGACCGTAACCACTATTTAAGGCGCAATCCGAGCTCCTCAAAATGTATCAAAACTGTAACGTCCTTTAAAGTACGGTAATTGAAATTTTTATCGCAGTAAMCACTGAAATTTGAGCTTTTTCGATATTATTCAAATTATTCAAACACTAATATCTCTATGAACGGAGGTTTTCTGATTAATGAGTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6881</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>211189</contig_pos>
        <strand>+</strand>
        <context>CCTAGTGAGT[A/G]CTTTCAATAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAATGAAGCACATAAATTCCTTCAAACCCATTTGATTTTCCTAGTGAGT</left_flank>
        <right_flank>CTTTCAATACTCACTATATTTTCTCAATTATGAATTTCAGACGCTGACCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAACCCCTATATTCTCTTTTAAAGAACATTCATGCATGATTCTACTTCCATAAATTTTTCAACATCAGCTAATTCCACACGATTTTCAGAATGAACAACGCTCCTATGACCTATAAAATGACTCCAATGAGGGATGTCTATTACGAAGAGGAGAAAAAAGTTTGCTGTGGAAAATTGACCTACAAGGTAACTTTAGAATTCCGATTACTCAGAACTCATACAATTTTCAGAATGCGTGCATTCTGATTGGAGCCATGGAAGTCGCCTACTGGGCGTATTACGGAATCCTGCTTCTTTTCGCAATCATCCACCATCAGAGAGCTTGTGAGTTTTGGCTTCTTTCGAAATCCTAAAATCAATATTCTATATTTTCAGGGAGTGTCGTGTTCACTGGTGTCAACCTTATCATGCTCACAGCTCAAGTGGTTATTTTGTGGTATGGAGTTATCAATGAAGCACATAAATTCCTTCAAACCCATTTGATTTTCCTAGTGAGTGCTTTCAATACTCACTATATTTTCTCAATTATGAATTTCAGACGCTGACCTTCCTCTGGGACGTTGTTTTGGCGATTGGATTCTTCTGCTTATCAGTTCTCCCTTACGCCTACACAAATGATATTCTACAGTATAAAGGAAATGAATGGAACGCGAGATTATTCGGAATCATTATGGGATCTTTGCTTCTCGTTTGGTTCGTTGCGAGATTCTTTGCCACTGTCATAATCTACAGATATTGGAAGTTGTTGAGAGCATTACAGGGATATGGTAATGATAATGACTTTTAATTTTGGATTTTTTTTTCATTTTATTGGTTGATTTTACGGGTTATGTTTTTTCAGATTATATGAATTTGCTATAAAACTTTGATTTGACATGTTTATAAATTGATGAAAACATATCTTATCAGTCATGTCTCATGACAGAAGGTTTTCTTATTTTCTCGTTCGACATAATAAAAGAAATGATATATTGATAAACTAGTTTTCGGGAAAATCA</canonical>
            <polymorphic>GAAAACCCCTATATTCTCTTTTAAAGAACATTCATGCATGATTCTACTTCCATAAATTTTTCAACATCAGCTAATTCCACACGATTTTCAGAATGAACAACGCTCCTATGACCTATAAAATGACTCCAATGAGGGATGTCTATTACGAAGAGGAGAAAAAAGTTTGCTGTGGAAAATTGACCTACAAGGTAACTTTAGAATTCCGATTACTCAGAACTCATACAATTTTCAGAATGCGTGCATTCTGATTGGAGCCATGGAAGTCGCCTACTGGGCGTATTACGGAATCCTGCTTCTTTTCGCAATCATCCACCATCAGAGAGCTTGTGAGTTTTGGCTTCTTTCGAAATCCTAAAATCAATATTCTATATTTTCAGGGAGTGTCGTGTTCACTGGTGTCAACCTTATCATGCTCACAGCTCAAGTGGTTATTTTGTGGTATGGAGTTATCAATGAAGCACATAAATTCCTTCAAACCCATTTGATTTTCCTAGTGAGTRCTTTCAATACTCACTATATTTTCTCAATTATGAATTTCAGACGCTGACCTTCCTCTGGGACGTTGTTTTGGCGATTGGATTCTTCTGCTTATCAGTTCTCCCTTACGCCTACACAAATGATATTCTACAGTATAAAGGAAATGAATGGAACGCGAGATTATTCGGAATCATTATGGGATCTTTGCTTCTCGTTTGGTTCGTTGCGAGATTCTTTGCCACTGTCATAATCTACAGATATTGGAAGTTGTTGAGAGCATTACAGGGATATGGTAATGATAATGACTTTTAATTTTGGATTTTTTTTTCATTTTATTGGTTGATTTTACGGGTTATGTTTTTTCAGATTATATGAATTTGCTATAAAACTTTGATTTGACATGTTTATAAATTGATGAAAACATATCTTATCAGTCATGTCTCATGACAGAAGGTTTTCTTATTTTCTCGTTCGACATAATAAAAGAAATGATATATTGATAAACTAGTTTTCGGGAAAATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>282 105 100 90 79 72 69 54 36 22 18 17 13 11 11 6 5 4 4 2</canonical_bands>
                <polymorphic_bands>282 105 100 90 79 72 69 54 36 22 18 17 17 11 11 6 5 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGGTATGGAGTTATCAATGAAG</pcr_primer_p1>
		<pcr_primer_p2>GCAAAGATCCCATAATGATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGGTATGGAGTTATCAATGAAGCACATAAATTCCTTCAAACCCATTTGATTTTCCTAGTGAGTGCTTTCAATACTCACTATATTTTCTCAATTATGAATTTCAGACGCTGACCTTCCTCTGGGACGTTGTTTTGGCGATTGGATTCTTCTGCTTATCAGTTCTCCCTTACGCCTACACAAATGATATTCTACAGTATAAAGGAAATGAATGGAACGCGAGATTATTCGGAATCATTATGGGATCTTTGC</canonical_amplicon>
		<polymorphic_amplicon>GTGGTATGGAGTTATCAATGAAGCACATAAATTCCTTCAAACCCATTTGATTTTCCTAGTGAGTRCTTTCAATACTCACTATATTTTCTCAATTATGAATTTCAGACGCTGACCTTCCTCTGGGACGTTGTTTTGGCGATTGGATTCTTCTGCTTATCAGTTCTCCCTTACGCCTACACAAATGATATTCTACAGTATAAAGGAAATGAATGGAACGCGAGATTATTCGGAATCATTATGGGATCTTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6882</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>211460</contig_pos>
        <strand>+</strand>
        <context>AGGGATATGG[C/T]AATGATAATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCATAATCTACAGATATTGGAAGTTGTTGAGAGCATTACAGGGATATGG</left_flank>
        <right_flank>AATGATAATGACTTTTAATTTTGGATTTTTTTTTCATTTTATTGGTTGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGCGTATTACGGAATCCTGCTTCTTTTCGCAATCATCCACCATCAGAGAGCTTGTGAGTTTTGGCTTCTTTCGAAATCCTAAAATCAATATTCTATATTTTCAGGGAGTGTCGTGTTCACTGGTGTCAACCTTATCATGCTCACAGCTCAAGTGGTTATTTTGTGGTATGGAGTTATCAATGAAGCACATAAATTCCTTCAAACCCATTTGATTTTCCTAGTGAGTGCTTTCAATACTCACTATATTTTCTCAATTATGAATTTCAGACGCTGACCTTCCTCTGGGACGTTGTTTTGGCGATTGGATTCTTCTGCTTATCAGTTCTCCCTTACGCCTACACAAATGATATTCTACAGTATAAAGGAAATGAATGGAACGCGAGATTATTCGGAATCATTATGGGATCTTTGCTTCTCGTTTGGTTCGTTGCGAGATTCTTTGCCACTGTCATAATCTACAGATATTGGAAGTTGTTGAGAGCATTACAGGGATATGGTAATGATAATGACTTTTAATTTTGGATTTTTTTTTCATTTTATTGGTTGATTTTACGGGTTATGTTTTTTCAGATTATATGAATTTGCTATAAAACTTTGATTTGACATGTTTATAAATTGATGAAAACATATCTTATCAGTCATGTCTCATGACAGAAGGTTTTCTTATTTTCTCGTTCGACATAATAAAAGAAATGATATATTGATAAACTAGTTTTCGGGAAAATCAGAAAAGTAATGTTCTATCTTTTTAGAATTGTTGGTAATCAAAAAAAAAAGAAAATTCAGAGAAACAAATCCATTTGAACAGTATAAAATCATTATAGGCAGCGTTCGAACGGCTAAAATGCTTCAAATTATGTACAAAAATCAGTATTTTTCCATGCTAGTGGTGAAAAAATCTGGATGAAAAGAAAGGGAAAAATTAAATGAAAATTATATGAGAATGAATACTTTTCAATGACTGAAGCATGGTATTTCGAACCAGCGGGTCGAAAATC</canonical>
            <polymorphic>TGGGCGTATTACGGAATCCTGCTTCTTTTCGCAATCATCCACCATCAGAGAGCTTGTGAGTTTTGGCTTCTTTCGAAATCCTAAAATCAATATTCTATATTTTCAGGGAGTGTCGTGTTCACTGGTGTCAACCTTATCATGCTCACAGCTCAAGTGGTTATTTTGTGGTATGGAGTTATCAATGAAGCACATAAATTCCTTCAAACCCATTTGATTTTCCTAGTGAGTGCTTTCAATACTCACTATATTTTCTCAATTATGAATTTCAGACGCTGACCTTCCTCTGGGACGTTGTTTTGGCGATTGGATTCTTCTGCTTATCAGTTCTCCCTTACGCCTACACAAATGATATTCTACAGTATAAAGGAAATGAATGGAACGCGAGATTATTCGGAATCATTATGGGATCTTTGCTTCTCGTTTGGTTCGTTGCGAGATTCTTTGCCACTGTCATAATCTACAGATATTGGAAGTTGTTGAGAGCATTACAGGGATATGGYAATGATAATGACTTTTAATTTTGGATTTTTTTTTCATTTTATTGGTTGATTTTACGGGTTATGTTTTTTCAGATTATATGAATTTGCTATAAAACTTTGATTTGACATGTTTATAAATTGATGAAAACATATCTTATCAGTCATGTCTCATGACAGAAGGTTTTCTTATTTTCTCGTTCGACATAATAAAAGAAATGATATATTGATAAACTAGTTTTCGGGAAAATCAGAAAAGTAATGTTCTATCTTTTTAGAATTGTTGGTAATCAAAAAAAAAAGAAAATTCAGAGAAACAAATCCATTTGAACAGTATAAAATCATTATAGGCAGCGTTCGAACGGCTAAAATGCTTCAAATTATGTACAAAAATCAGTATTTTTCCATGCTAGTGGTGAAAAAATCTGGATGAAAAGAAAGGGAAAAATTAAATGAAAATTATATGAGAATGAATACTTTTCAATGACTGAAGCATGGTATTTCGAACCAGCGGGTCGAAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTCTGCTTATCAGTTCTCC</pcr_primer_p1>
		<pcr_primer_p2>CGTAAAATCAACCAATAAAATGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTCTGCTTATCAGTTCTCCCTTACGCCTACACAAATGATATTCTACAGTATAAAGGAAATGAATGGAACGCGAGATTATTCGGAATCATTATGGGATCTTTGCTTCTCGTTTGGTTCGTTGCGAGATTCTTTGCCACTGTCATAATCTACAGATATTGGAAGTTGTTGAGAGCATTACAGGGATATGGTAATGATAATGACTTTTAATTTTGGATTTTTTTTTCATTTTATTGGTTGATTTTACG</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTCTGCTTATCAGTTCTCCCTTACGCCTACACAAATGATATTCTACAGTATAAAGGAAATGAATGGAACGCGAGATTATTCGGAATCATTATGGGATCTTTGCTTCTCGTTTGGTTCGTTGCGAGATTCTTTGCCACTGTCATAATCTACAGATATTGGAAGTTGTTGAGAGCATTACAGGGATATGGYAATGATAATGACTTTTAATTTTGGATTTTTTTTTCATTTTATTGGTTGATTTTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6883</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>211525</contig_pos>
        <strand>+</strand>
        <context>CGGGTTATGT[G/T]TTTTCAGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTAATTTTGGATTTTTTTTTCATTTTATTGGTTGATTTTACGGGTTATGT</left_flank>
        <right_flank>TTTTCAGATTATATGAATTTGCTATAAAACTTTGATTTGACATGTTTATA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTCTTTCGAAATCCTAAAATCAATATTCTATATTTTCAGGGAGTGTCGTGTTCACTGGTGTCAACCTTATCATGCTCACAGCTCAAGTGGTTATTTTGTGGTATGGAGTTATCAATGAAGCACATAAATTCCTTCAAACCCATTTGATTTTCCTAGTGAGTGCTTTCAATACTCACTATATTTTCTCAATTATGAATTTCAGACGCTGACCTTCCTCTGGGACGTTGTTTTGGCGATTGGATTCTTCTGCTTATCAGTTCTCCCTTACGCCTACACAAATGATATTCTACAGTATAAAGGAAATGAATGGAACGCGAGATTATTCGGAATCATTATGGGATCTTTGCTTCTCGTTTGGTTCGTTGCGAGATTCTTTGCCACTGTCATAATCTACAGATATTGGAAGTTGTTGAGAGCATTACAGGGATATGGTAATGATAATGACTTTTAATTTTGGATTTTTTTTTCATTTTATTGGTTGATTTTACGGGTTATGTTTTTTCAGATTATATGAATTTGCTATAAAACTTTGATTTGACATGTTTATAAATTGATGAAAACATATCTTATCAGTCATGTCTCATGACAGAAGGTTTTCTTATTTTCTCGTTCGACATAATAAAAGAAATGATATATTGATAAACTAGTTTTCGGGAAAATCAGAAAAGTAATGTTCTATCTTTTTAGAATTGTTGGTAATCAAAAAAAAAAGAAAATTCAGAGAAACAAATCCATTTGAACAGTATAAAATCATTATAGGCAGCGTTCGAACGGCTAAAATGCTTCAAATTATGTACAAAAATCAGTATTTTTCCATGCTAGTGGTGAAAAAATCTGGATGAAAAGAAAGGGAAAAATTAAATGAAAATTATATGAGAATGAATACTTTTCAATGACTGAAGCATGGTATTTCGAACCAGCGGGTCGAAAATCGCGCCCCAGCGAATGTGAAAAATCACTGCGCAACGTGTCGAATTTCGTTTGCTGAGAATCAAACT</canonical>
            <polymorphic>GCTTCTTTCGAAATCCTAAAATCAATATTCTATATTTTCAGGGAGTGTCGTGTTCACTGGTGTCAACCTTATCATGCTCACAGCTCAAGTGGTTATTTTGTGGTATGGAGTTATCAATGAAGCACATAAATTCCTTCAAACCCATTTGATTTTCCTAGTGAGTGCTTTCAATACTCACTATATTTTCTCAATTATGAATTTCAGACGCTGACCTTCCTCTGGGACGTTGTTTTGGCGATTGGATTCTTCTGCTTATCAGTTCTCCCTTACGCCTACACAAATGATATTCTACAGTATAAAGGAAATGAATGGAACGCGAGATTATTCGGAATCATTATGGGATCTTTGCTTCTCGTTTGGTTCGTTGCGAGATTCTTTGCCACTGTCATAATCTACAGATATTGGAAGTTGTTGAGAGCATTACAGGGATATGGTAATGATAATGACTTTTAATTTTGGATTTTTTTTTCATTTTATTGGTTGATTTTACGGGTTATGTKTTTTCAGATTATATGAATTTGCTATAAAACTTTGATTTGACATGTTTATAAATTGATGAAAACATATCTTATCAGTCATGTCTCATGACAGAAGGTTTTCTTATTTTCTCGTTCGACATAATAAAAGAAATGATATATTGATAAACTAGTTTTCGGGAAAATCAGAAAAGTAATGTTCTATCTTTTTAGAATTGTTGGTAATCAAAAAAAAAAGAAAATTCAGAGAAACAAATCCATTTGAACAGTATAAAATCATTATAGGCAGCGTTCGAACGGCTAAAATGCTTCAAATTATGTACAAAAATCAGTATTTTTCCATGCTAGTGGTGAAAAAATCTGGATGAAAAGAAAGGGAAAAATTAAATGAAAATTATATGAGAATGAATACTTTTCAATGACTGAAGCATGGTATTTCGAACCAGCGGGTCGAAAATCGCGCCCCAGCGAATGTGAAAAATCACTGCGCAACGTGTCGAATTTCGTTTGCTGAGAATCAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTGCCACTGTCATAATCTAC</pcr_primer_p1>
		<pcr_primer_p2>ATTATGTCGAACGAGAAAATAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTTTGCCACTGTCATAATCTACAGATATTGGAAGTTGTTGAGAGCATTACAGGGATATGGTAATGATAATGACTTTTAATTTTGGATTTTTTTTTCATTTTATTGGTTGATTTTACGGGTTATGTTTTTTCAGATTATATGAATTTGCTATAAAACTTTGATTTGACATGTTTATAAATTGATGAAAACATATCTTATCAGTCATGTCTCATGACAGAAGGTTTTCTTATTTTCTCGTTCGACATAAT</canonical_amplicon>
		<polymorphic_amplicon>TCTTTGCCACTGTCATAATCTACAGATATTGGAAGTTGTTGAGAGCATTACAGGGATATGGTAATGATAATGACTTTTAATTTTGGATTTTTTTTTCATTTTATTGGTTGATTTTACGGGTTATGTKTTTTCAGATTATATGAATTTGCTATAAAACTTTGATTTGACATGTTTATAAATTGATGAAAACATATCTTATCAGTCATGTCTCATGACAGAAGGTTTTCTTATTTTCTCGTTCGACATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6884</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>214358</contig_pos>
        <strand></strand>
        <context>ACCGCAGCTT[C/T]GTTTCCTGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAAAGTGCACTTCTCATTGTCCTCTTCTTCTTTTTCTCAACCGCAGCTT</left_flank>
        <right_flank>GTTTCCTGCTGGCGGGTACTAATAAAAAGAGCTTAAGTGAGCATAAGCCG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAATGCAGTTTTCCTGTGTCCCCCAATATGCGGGGTTCAATTTTTCGCTGGTAGGTTTTTGAATTGAATTAAATTCAAAATAATGATAGAGAGGTCGCATTGGAGTCTGTATTATCGGAACTCTCTGCTTCTCTTCAGATCCCCCAGTGACTATTAGTATTTCGAAAACAGCGGGATACTGGCATCGGGTGCCGCGCGAAAAGAGATGGAGAAGTTGTCATAGGAGGAAAAGGAAGATAATCAATTTTTGAAACACATAAAACCTACAATTCAAATAGAAGATATACGAGTGTACAGACTGGTACCAAGGCCAGTGGGTCAGTTACCAAAAATACTATTATTTTAGCACCTGATACTATTCATTCTCGTATTATTTGGTTATTTTATTTTCCTATTTAGATGTCGTTAAACCTAAATTCGGCATTATAAAAGAACATAATAAAAGATGGGAAAGTGCACTTCTCATTGTCCTCTTCTTCTTTTTCTCAACCGCAGCTTCGTTTCCTGCTGGCGGGTACTAATAAAAAGAGCTTAAGTGAGCATAAGCCGGTACCAAAAAAGGAGTAGCCCATTACTGTATCATTAGAGCGGATAATTGGAAGCTATTTGAAGCTTCATATGTTGTTTTTCAAGTGTTCTTATAGGTTGTTTGGAGCCTTTTCCCCATTTTAAATGTGGAAAAGAGGAAAACGAGAAACACGCTCATAACCATAAACTGTGATCGACGGCTAGGCACCCCCATTCCATCTCATTAGGTCGCATTTTATTAGAATACAATGATATTTGTCTTGCAATAAAACGAATTCAATTTCATAACATTTGAAAAACAATATTGGTTCAGACCGAAAACTCAAAGTATATACCGTAAAACCAGTAATATAAGGGCGCCCTAACTTCCAACGTGGAACCCATATATCTTGTTTCCTGTCAAAGATATCGAAAAATTGTTGACTGAAAATTTTTTATCATAAAATCAAAAGCATTTTATAAGTTGACTTG</canonical>
            <polymorphic>ACAATGCAGTTTTCCTGTGTCCCCCAATATGCGGGGTTCAATTTTTCGCTGGTAGGTTTTTGAATTGAATTAAATTCAAAATAATGATAGAGAGGTCGCATTGGAGTCTGTATTATCGGAACTCTCTGCTTCTCTTCAGATCCCCCAGTGACTATTAGTATTTCGAAAACAGCGGGATACTGGCATCGGGTGCCGCGCGAAAAGAGATGGAGAAGTTGTCATAGGAGGAAAAGGAAGATAATCAATTTTTGAAACACATAAAACCTACAATTCAAATAGAAGATATACGAGTGTACAGACTGGTACCAAGGCCAGTGGGTCAGTTACCAAAAATACTATTATTTTAGCACCTGATACTATTCATTCTCGTATTATTTGGTTATTTTATTTTCCTATTTAGATGTCGTTAAACCTAAATTCGGCATTATAAAAGAACATAATAAAAGATGGGAAAGTGCACTTCTCATTGTCCTCTTCTTCTTTTTCTCAACCGCAGCTTYGTTTCCTGCTGGCGGGTACTAATAAAAAGAGCTTAAGTGAGCATAAGCCGGTACCAAAAAAGGAGTAGCCCATTACTGTATCATTAGAGCGGATAATTGGAAGCTATTTGAAGCTTCATATGTTGTTTTTCAAGTGTTCTTATAGGTTGTTTGGAGCCTTTTCCCCATTTTAAATGTGGAAAAGAGGAAAACGAGAAACACGCTCATAACCATAAACTGTGATCGACGGCTAGGCACCCCCATTCCATCTCATTAGGTCGCATTTTATTAGAATACAATGATATTTGTCTTGCAATAAAACGAATTCAATTTCATAACATTTGAAAAACAATATTGGTTCAGACCGAAAACTCAAAGTATATACCGTAAAACCAGTAATATAAGGGCGCCCTAACTTCCAACGTGGAACCCATATATCTTGTTTCCTGTCAAAGATATCGAAAAATTGTTGACTGAAAATTTTTTATCATAAAATCAAAAGCATTTTATAAGTTGACTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTAAACCTAAATTCGGCATTAT</pcr_primer_p1>
		<pcr_primer_p2>TCCAAACAACCTATAAGAACACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTAAACCTAAATTCGGCATTATAAAAGAACATAATAAAAGATGGGAAAGTGCACTTCTCATTGTCCTCTTCTTCTTTTTCTCAACCGCAGCTTCGTTTCCTGCTGGCGGGTACTAATAAAAAGAGCTTAAGTGAGCATAAGCCGGTACCAAAAAAGGAGTAGCCCATTACTGTATCATTAGAGCGGATAATTGGAAGCTATTTGAAGCTTCATATGTTGTTTTTCAAGTGTTCTTATAGGTTGTTTGGA</canonical_amplicon>
		<polymorphic_amplicon>GTTAAACCTAAATTCGGCATTATAAAAGAACATAATAAAAGATGGGAAAGTGCACTTCTCATTGTCCTCTTCTTCTTTTTCTCAACCGCAGCTTYGTTTCCTGCTGGCGGGTACTAATAAAAAGAGCTTAAGTGAGCATAAGCCGGTACCAAAAAAGGAGTAGCCCATTACTGTATCATTAGAGCGGATAATTGGAAGCTATTTGAAGCTTCATATGTTGTTTTTCAAGTGTTCTTATAGGTTGTTTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6885</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>214192</contig_pos>
        <strand></strand>
        <context>TTACCAAAAA[T/A]ACTATTATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TATACGAGTGTACAGACTGGTACCAAGGCCAGTGGGTCAGTTACCAAAAA</left_flank>
        <right_flank>ACTATTATTTTAGCACCTGATACTATTCATTCTCGTATTATTTGGTTATT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAGGAAGGACTCGCGTAAATCCCATATTTTCGGATCGATCTTTCTCAAACTTCAGTGAGTTTTTTAGGTAGATATTATCGTTACCCAAAGGCCTCGATTCTATGAATGAGCCAATTTAGATAAAAATTCTGAAGAGCTTTCTGTTCGAAATTCCCTTGTCAGTGACAATGCAGTTTTCCTGTGTCCCCCAATATGCGGGGTTCAATTTTTCGCTGGTAGGTTTTTGAATTGAATTAAATTCAAAATAATGATAGAGAGGTCGCATTGGAGTCTGTATTATCGGAACTCTCTGCTTCTCTTCAGATCCCCCAGTGACTATTAGTATTTCGAAAACAGCGGGATACTGGCATCGGGTGCCGCGCGAAAAGAGATGGAGAAGTTGTCATAGGAGGAAAAGGAAGATAATCAATTTTTGAAACACATAAAACCTACAATTCAAATAGAAGATATACGAGTGTACAGACTGGTACCAAGGCCAGTGGGTCAGTTACCAAAAATACTATTATTTTAGCACCTGATACTATTCATTCTCGTATTATTTGGTTATTTTATTTTCCTATTTAGATGTCGTTAAACCTAAATTCGGCATTATAAAAGAACATAATAAAAGATGGGAAAGTGCACTTCTCATTGTCCTCTTCTTCTTTTTCTCAACCGCAGCTTCGTTTCCTGCTGGCGGGTACTAATAAAAAGAGCTTAAGTGAGCATAAGCCGGTACCAAAAAAGGAGTAGCCCATTACTGTATCATTAGAGCGGATAATTGGAAGCTATTTGAAGCTTCATATGTTGTTTTTCAAGTGTTCTTATAGGTTGTTTGGAGCCTTTTCCCCATTTTAAATGTGGAAAAGAGGAAAACGAGAAACACGCTCATAACCATAAACTGTGATCGACGGCTAGGCACCCCCATTCCATCTCATTAGGTCGCATTTTATTAGAATACAATGATATTTGTCTTGCAATAAAACGAATTCAATTTCATAACATTTGAAAAACAATAT</canonical>
            <polymorphic>GAAAGGAAGGACTCGCGTAAATCCCATATTTTCGGATCGATCTTTCTCAAACTTCAGTGAGTTTTTTAGGTAGATATTATCGTTACCCAAAGGCCTCGATTCTATGAATGAGCCAATTTAGATAAAAATTCTGAAGAGCTTTCTGTTCGAAATTCCCTTGTCAGTGACAATGCAGTTTTCCTGTGTCCCCCAATATGCGGGGTTCAATTTTTCGCTGGTAGGTTTTTGAATTGAATTAAATTCAAAATAATGATAGAGAGGTCGCATTGGAGTCTGTATTATCGGAACTCTCTGCTTCTCTTCAGATCCCCCAGTGACTATTAGTATTTCGAAAACAGCGGGATACTGGCATCGGGTGCCGCGCGAAAAGAGATGGAGAAGTTGTCATAGGAGGAAAAGGAAGATAATCAATTTTTGAAACACATAAAACCTACAATTCAAATAGAAGATATACGAGTGTACAGACTGGTACCAAGGCCAGTGGGTCAGTTACCAAAAAWACTATTATTTTAGCACCTGATACTATTCATTCTCGTATTATTTGGTTATTTTATTTTCCTATTTAGATGTCGTTAAACCTAAATTCGGCATTATAAAAGAACATAATAAAAGATGGGAAAGTGCACTTCTCATTGTCCTCTTCTTCTTTTTCTCAACCGCAGCTTCGTTTCCTGCTGGCGGGTACTAATAAAAAGAGCTTAAGTGAGCATAAGCCGGTACCAAAAAAGGAGTAGCCCATTACTGTATCATTAGAGCGGATAATTGGAAGCTATTTGAAGCTTCATATGTTGTTTTTCAAGTGTTCTTATAGGTTGTTTGGAGCCTTTTCCCCATTTTAAATGTGGAAAAGAGGAAAACGAGAAACACGCTCATAACCATAAACTGTGATCGACGGCTAGGCACCCCCATTCCATCTCATTAGGTCGCATTTTATTAGAATACAATGATATTTGTCTTGCAATAAAACGAATTCAATTTCATAACATTTGAAAAACAATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAAGATAATCAATTTTTGAAAC</pcr_primer_p1>
		<pcr_primer_p2>AGAAGAAGAGGACAATGAGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGAAGATAATCAATTTTTGAAACACATAAAACCTACAATTCAAATAGAAGATATACGAGTGTACAGACTGGTACCAAGGCCAGTGGGTCAGTTACCAAAAATACTATTATTTTAGCACCTGATACTATTCATTCTCGTATTATTTGGTTATTTTATTTTCCTATTTAGATGTCGTTAAACCTAAATTCGGCATTATAAAAGAACATAATAAAAGATGGGAAAGTGCACTTCTCATTGTCCTCTTCTTCT</canonical_amplicon>
		<polymorphic_amplicon>AGGAAGATAATCAATTTTTGAAACACATAAAACCTACAATTCAAATAGAAGATATACGAGTGTACAGACTGGTACCAAGGCCAGTGGGTCAGTTACCAAAAAWACTATTATTTTAGCACCTGATACTATTCATTCTCGTATTATTTGGTTATTTTATTTTCCTATTTAGATGTCGTTAAACCTAAATTCGGCATTATAAAAGAACATAATAAAAGATGGGAAAGTGCACTTCTCATTGTCCTCTTCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6886</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>221823</contig_pos>
        <strand>+</strand>
        <context>TCAATTATCT[A/C]ATGGTAGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTATATCGTGAAGAATTGCATAACAGATAATCTGATTGTTCAATTATCT</left_flank>
        <right_flank>ATGGTAGTTTCCAATTTTTTCTCTGTTCAGCAGTTTCTGGAAAGTCTTAC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCTCAGTGAATCGAACGAACGGAGAAGGTCTCGAAGACAATGGACAAACAAATCGGGGCCATGTTTGGAGGTATTTGTACTATCCGACAGTCTTTTCTCTCCCGCAATACCTGACCGTCACATTATGCTGTACCTTGAAACTTTTTTCAATCAATTCTATTCGTTATTTCAGCTATTCAACTTTCTTGTTTTTTTTTCTATTTTTTTTCTTTTTCGGTAAATTCAGCTGAAAATGAAAATGCCCGAATGATCTCAAGTCGCTTGAAATCCTGGTAGCATTTTCTCCATTTCTCTCTCAATCTGTACTCACTAGTCCGAAGTCATTCATATTAAATTTCCTACCCCAATAGTCGACAAATTTTCCACTCAAAAAACATCAACATCCTTCGGGAGAAGTAAATCACACTATTACCCACAATACCCAAAGTCTACTAGTCATATTATTAGCTTATATCGTGAAGAATTGCATAACAGATAATCTGATTGTTCAATTATCTAATGGTAGTTTCCAATTTTTTCTCTGTTCAGCAGTTTCTGGAAAGTCTTACTATTAGATCTGTGAGTTTCAATATAAAATTACTTCACAGTGAAACCGGAGTTCAATTTTCTTCTACACAGCTACGTTCTTGGTTTTATCTGATCTTAGACCATACATCCGTTCGAAATTTCCAGAACCTTCGTCGCTTAGACGGAAGCTACCGTGAATACTCAATAGACGGCCTCTCAAACCGTATATCTCCATTTCTATGAAAGATAATTATGTCTTCAACTGACAAAATGTTTACCATAATATCAAAAATATTTTGTCAGGGATCACTTTCTTATATCTTTCACAGGAATCGAGATATACGTGCTCAAGGTTGGCGGTTCAGGTGGCCTTCTATTAGAGTGTTCAAGGTACCCCATTACCGCAAACCACAAAACCTATAAATGTTTCTAGCTTTGTTCCCGCTGTTTCAATTTAGTTGCACTCTGTCTTCTGAGTATCTTTTTATCAT</canonical>
            <polymorphic>TGGCTCAGTGAATCGAACGAACGGAGAAGGTCTCGAAGACAATGGACAAACAAATCGGGGCCATGTTTGGAGGTATTTGTACTATCCGACAGTCTTTTCTCTCCCGCAATACCTGACCGTCACATTATGCTGTACCTTGAAACTTTTTTCAATCAATTCTATTCGTTATTTCAGCTATTCAACTTTCTTGTTTTTTTTTCTATTTTTTTTCTTTTTCGGTAAATTCAGCTGAAAATGAAAATGCCCGAATGATCTCAAGTCGCTTGAAATCCTGGTAGCATTTTCTCCATTTCTCTCTCAATCTGTACTCACTAGTCCGAAGTCATTCATATTAAATTTCCTACCCCAATAGTCGACAAATTTTCCACTCAAAAAACATCAACATCCTTCGGGAGAAGTAAATCACACTATTACCCACAATACCCAAAGTCTACTAGTCATATTATTAGCTTATATCGTGAAGAATTGCATAACAGATAATCTGATTGTTCAATTATCTMATGGTAGTTTCCAATTTTTTCTCTGTTCAGCAGTTTCTGGAAAGTCTTACTATTAGATCTGTGAGTTTCAATATAAAATTACTTCACAGTGAAACCGGAGTTCAATTTTCTTCTACACAGCTACGTTCTTGGTTTTATCTGATCTTAGACCATACATCCGTTCGAAATTTCCAGAACCTTCGTCGCTTAGACGGAAGCTACCGTGAATACTCAATAGACGGCCTCTCAAACCGTATATCTCCATTTCTATGAAAGATAATTATGTCTTCAACTGACAAAATGTTTACCATAATATCAAAAATATTTTGTCAGGGATCACTTTCTTATATCTTTCACAGGAATCGAGATATACGTGCTCAAGGTTGGCGGTTCAGGTGGCCTTCTATTAGAGTGTTCAAGGTACCCCATTACCGCAAACCACAAAACCTATAAATGTTTCTAGCTTTGTTCCCGCTGTTTCAATTTAGTTGCACTCTGTCTTCTGAGTATCTTTTTATCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTAAATCACACTATTACCCACAA</pcr_primer_p1>
		<pcr_primer_p2>GATCAGATAAAACCAAGAACGTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGTAAATCACACTATTACCCACAATACCCAAAGTCTACTAGTCATATTATTAGCTTATATCGTGAAGAATTGCATAACAGATAATCTGATTGTTCAATTATCTAATGGTAGTTTCCAATTTTTTCTCTGTTCAGCAGTTTCTGGAAAGTCTTACTATTAGATCTGTGAGTTTCAATATAAAATTACTTCACAGTGAAACCGGAGTTCAATTTTCTTCTACACAGCTACGTTCTTGGTTTTATCTGATC</canonical_amplicon>
		<polymorphic_amplicon>AGTAAATCACACTATTACCCACAATACCCAAAGTCTACTAGTCATATTATTAGCTTATATCGTGAAGAATTGCATAACAGATAATCTGATTGTTCAATTATCTMATGGTAGTTTCCAATTTTTTCTCTGTTCAGCAGTTTCTGGAAAGTCTTACTATTAGATCTGTGAGTTTCAATATAAAATTACTTCACAGTGAAACCGGAGTTCAATTTTCTTCTACACAGCTACGTTCTTGGTTTTATCTGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6887</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>223299</contig_pos>
        <strand>+</strand>
        <context>ATAAGAAAGA[C/G]CTTGGGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAATCTGTGTCTTGATTCCATTTTATCAAGACACAGAGATATAAGAAAGA</left_flank>
        <right_flank>CTTGGGAAAAATCCAAAGTTTGTTTCGATATATAAAGTACGGAAACCGTA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGCATAACGAAAGTGACGAAAATTGGTCTAGAGGAGATTTTCACTTAATTGGAGATGTTCTTATTTTTCGAGGAACACCTTAATTTTCCCATAATGTTCCCTATTCTTCATGTTTCGTTTTCTTTGTCGTCTTAGATTTTGTTCTGCTCTTCGACCTCTTTTCGCCCTGTGTTCTGTGTTTGCATTCCCGATTATTTTTGATGAATTAACTGAACTATTTGATGAGTTGTGTGGAAGAGAGAAGAAACGAAAGTGAAAGAAAAAAAGATAGGAAGAGCAGGAATTGATCATTCGGCTGGTTCCATCTGTGTTTTTTTCCTCATACAAACTCCCACGAACAGCTGATTTGATATTGTTTCCGGTCGCAGTTGACATGAAAAGCTCAAGCTGGAATCGTTTTTTTTTTTGATAAAAAGGAATCTAGACAGTTGGTGGATTTAAAAATAGCTAATCTGTGTCTTGATTCCATTTTATCAAGACACAGAGATATAAGAAAGACCTTGGGAAAAATCCAAAGTTTGTTTCGATATATAAAGTACGGAAACCGTAAAACCTGTAATAGAAGGGCTCCCTAACTTTAAACTTTGAGCTCAATCATCTCGGTTCTTGTCAAAGATATGAGAAAGTAATCAATTAATACATTTTTTATCATAATGTCATCAATATTTCATTAGTGTAAAGATTTTTGATATCTCTTATAGCAACTGACAAGGGAAGGCTTTTTAGACAACGGTTGAGAATTTTGGTTGATTACGACTGTTGATTTTCACATTTCTCAACTTCCGATTTGCAGAATTTGAAAAGTTAGAAAAGATTGAAAAATAAGGTAAGCTGTATTTGAAGTTTACATTCTTACTGTAGTTTCTATAATTGCCCACTGCTCAGTAAAACTCCAGTTTTCAAGATTTCAACTTGTTATCCATGTTCCGATCTCCATCTTTCTGCCTTCTGAATTTTCACATTCCTTTCCCCTGTTAAGTAAGAAATCATGCGAAAAAA</canonical>
            <polymorphic>TGGCATAACGAAAGTGACGAAAATTGGTCTAGAGGAGATTTTCACTTAATTGGAGATGTTCTTATTTTTCGAGGAACACCTTAATTTTCCCATAATGTTCCCTATTCTTCATGTTTCGTTTTCTTTGTCGTCTTAGATTTTGTTCTGCTCTTCGACCTCTTTTCGCCCTGTGTTCTGTGTTTGCATTCCCGATTATTTTTGATGAATTAACTGAACTATTTGATGAGTTGTGTGGAAGAGAGAAGAAACGAAAGTGAAAGAAAAAAAGATAGGAAGAGCAGGAATTGATCATTCGGCTGGTTCCATCTGTGTTTTTTTCCTCATACAAACTCCCACGAACAGCTGATTTGATATTGTTTCCGGTCGCAGTTGACATGAAAAGCTCAAGCTGGAATCGTTTTTTTTTTTGATAAAAAGGAATCTAGACAGTTGGTGGATTTAAAAATAGCTAATCTGTGTCTTGATTCCATTTTATCAAGACACAGAGATATAAGAAAGASCTTGGGAAAAATCCAAAGTTTGTTTCGATATATAAAGTACGGAAACCGTAAAACCTGTAATAGAAGGGCTCCCTAACTTTAAACTTTGAGCTCAATCATCTCGGTTCTTGTCAAAGATATGAGAAAGTAATCAATTAATACATTTTTTATCATAATGTCATCAATATTTCATTAGTGTAAAGATTTTTGATATCTCTTATAGCAACTGACAAGGGAAGGCTTTTTAGACAACGGTTGAGAATTTTGGTTGATTACGACTGTTGATTTTCACATTTCTCAACTTCCGATTTGCAGAATTTGAAAAGTTAGAAAAGATTGAAAAATAAGGTAAGCTGTATTTGAAGTTTACATTCTTACTGTAGTTTCTATAATTGCCCACTGCTCAGTAAAACTCCAGTTTTCAAGATTTCAACTTGTTATCCATGTTCCGATCTCCATCTTTCTGCCTTCTGAATTTTCACATTCCTTTCCCCTGTTAAGTAAGAAATCATGCGAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATAGCTAATCTGTGTCTTGA</pcr_primer_p1>
		<pcr_primer_p2>GAAAATCAACAGTCGTAATCAAC</pcr_primer_p2>
		<pcr_amplicon_size>329</pcr_amplicon_size>
		<canonical_amplicon>AAAAATAGCTAATCTGTGTCTTGATTCCATTTTATCAAGACACAGAGATATAAGAAAGACCTTGGGAAAAATCCAAAGTTTGTTTCGATATATAAAGTACGGAAACCGTAAAACCTGTAATAGAAGGGCTCCCTAACTTTAAACTTTGAGCTCAATCATCTCGGTTCTTGTCAAAGATATGAGAAAGTAATCAATTAATACATTTTTTATCATAATGTCATCAATATTTCATTAGTGTAAAGATTTTTGATATCTCTTATAGCAACTGACAAGGGAAGGCTTTTTAGACAACGGTTGAGAATTTTGGTTGATTACGACTGTTGATTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATAGCTAATCTGTGTCTTGATTCCATTTTATCAAGACACAGAGATATAAGAAAGASCTTGGGAAAAATCCAAAGTTTGTTTCGATATATAAAGTACGGAAACCGTAAAACCTGTAATAGAAGGGCTCCCTAACTTTAAACTTTGAGCTCAATCATCTCGGTTCTTGTCAAAGATATGAGAAAGTAATCAATTAATACATTTTTTATCATAATGTCATCAATATTTCATTAGTGTAAAGATTTTTGATATCTCTTATAGCAACTGACAAGGGAAGGCTTTTTAGACAACGGTTGAGAATTTTGGTTGATTACGACTGTTGATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6889</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>223118</contig_pos>
        <strand>+</strand>
        <context>STGTTTTTTT[C/T]CTCATACAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAGGAAGAGCAGGAATTGATCATTCGGCTGGTTCCATCTGTGTTTTTTT</left_flank>
        <right_flank>CTCATACAAACTCCCACGAACAGCTGATTTGATATTGTTTCCGGTCGCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAGAGACTGTTATTAAAATGTATGGGAAGCCTTCAGTGTTGAAATGACAAAAAAGAGTGAAGAGAGAAAGGGTAAATCTAGTCAACAAGAACACTTGTCGCCGTCGTTTTCCGCCATTCTAAACTGCGTCTAATCCAGCGACATGCACTTGTTCGAAACTTGAGAATAAGTCAACTGTATGGCATAACGAAAGTGACGAAAATTGGTCTAGAGGAGATTTTCACTTAATTGGAGATGTTCTTATTTTTCGAGGAACACCTTAATTTTCCCATAATGTTCCCTATTCTTCATGTTTCGTTTTCTTTGTCGTCTTAGATTTTGTTCTGCTCTTCGACCTCTTTTCGCCCTGTGTTCTGTGTTTGCATTCCCGATTATTTTTGATGAATTAACTGAACTATTTGATGAGTTGTGTGGAAGAGAGAAGAAACGAAAGTGAAAGAAAAAAAGATAGGAAGAGCAGGAATTGATCATTCGGCTGGTTCCATCTGTGTTTTTTTCCTCATACAAACTCCCACGAACAGCTGATTTGATATTGTTTCCGGTCGCAGTTGACATGAAAAGCTCAAGCTGGAATCGTTTTTTTTTTTGATAAAAAGGAATCTAGACAGTTGGTGGATTTAAAAATAGCTAATCTGTGTCTTGATTCCATTTTATCAAGACACAGAGATATAAGAAAGACCTTGGGAAAAATCCAAAGTTTGTTTCGATATATAAAGTACGGAAACCGTAAAACCTGTAATAGAAGGGCTCCCTAACTTTAAACTTTGAGCTCAATCATCTCGGTTCTTGTCAAAGATATGAGAAAGTAATCAATTAATACATTTTTTATCATAATGTCATCAATATTTCATTAGTGTAAAGATTTTTGATATCTCTTATAGCAACTGACAAGGGAAGGCTTTTTAGACAACGGTTGAGAATTTTGGTTGATTACGACTGTTGATTTTCACATTTCTCAACTTCCGATTTGCAGAATTTGAAAAGTTAGAAAAGATTGA</canonical>
            <polymorphic>GAGAGAGACTGTTATTAAAATGTATGGGAAGCCTTCAGTGTTGAAATGACAAAAAAGAGTGAAGAGAGAAAGGGTAAATCTAGTCAACAAGAACACTTGTCGCCGTCGTTTTCCGCCATTCTAAACTGCGTCTAATCCAGCGACATGCACTTGTTCGAAACTTGAGAATAAGTCAACTGTATGGCATAACGAAAGTGACGAAAATTGGTCTAGAGGAGATTTTCACTTAATTGGAGATGTTCTTATTTTTCGAGGAACACCTTAATTTTCCCATAATGTTCCCTATTCTTCATGTTTCGTTTTCTTTGTCGTCTTAGATTTTGTTCTGCTCTTCGACCTCTTTTCGCCCTGTGTTCTGTGTTTGCATTCCCGATTATTTTTGATGAATTAACTGAACTATTTGATGAGTTGTGTGGAAGAGAGAAGAAACGAAAGTGAAAGAAAAAAAGATAGGAAGAGCAGGAATTGATCATTCGGCTGGTTCCATCTGTGTTTTTTTYCTCATACAAACTCCCACGAACAGCTGATTTGATATTGTTTCCGGTCGCAGTTGACATGAAAAGCTCAAGCTGGAATCGTTTTTTTTTTTGATAAAAAGGAATCTAGACAGTTGGTGGATTTAAAAATAGCTAATCTGTGTCTTGATTCCATTTTATCAAGACACAGAGATATAAGAAAGACCTTGGGAAAAATCCAAAGTTTGTTTCGATATATAAAGTACGGAAACCGTAAAACCTGTAATAGAAGGGCTCCCTAACTTTAAACTTTGAGCTCAATCATCTCGGTTCTTGTCAAAGATATGAGAAAGTAATCAATTAATACATTTTTTATCATAATGTCATCAATATTTCATTAGTGTAAAGATTTTTGATATCTCTTATAGCAACTGACAAGGGAAGGCTTTTTAGACAACGGTTGAGAATTTTGGTTGATTACGACTGTTGATTTTCACATTTCTCAACTTCCGATTTGCAGAATTTGAAAAGTTAGAAAAGATTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAGAGAAGAAACGAAAGTGA</pcr_primer_p1>
		<pcr_primer_p2>CTGTGTCTTGATAAAATGGAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAGAGAAGAAACGAAAGTGAAAGAAAAAAAGATAGGAAGAGCAGGAATTGATCATTCGGCTGGTTCCATCTGTGTTTTTTTCCTCATACAAACTCCCACGAACAGCTGATTTGATATTGTTTCCGGTCGCAGTTGACATGAAAAGCTCAAGCTGGAATCGTTTTTTTTTTTGATAAAAAGGAATCTAGACAGTTGGTGGATTTAAAAATAGCTAATCTGTGTCTTGATTCCATTTTATCAAGACACAG</canonical_amplicon>
		<polymorphic_amplicon>AAGAGAGAAGAAACGAAAGTGAAAGAAAAAAAGATAGGAAGAGCAGGAATTGATCATTCGGCTGGTTCCATCTGTGTTTTTTTYCTCATACAAACTCCCACGAACAGCTGATTTGATATTGTTTCCGGTCGCAGTTGACATGAAAAGCTCAAGCTGGAATCGTTTTTTTTTTTGATAAAAAGGAATCTAGACAGTTGGTGGATTTAAAAATAGCTAATCTGTGTCTTGATTCCATTTTATCAAGACACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6890</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>223108</contig_pos>
        <strand>+</strand>
        <context>GGTTCCATCT[C/G]TGTTTTTTTY</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGAAAAAAAGATAGGAAGAGCAGGAATTGATCATTCGGCTGGTTCCATCT</left_flank>
        <right_flank>TGTTTTTTTCCTCATACAAACTCCCACGAACAGCTGATTTGATATTGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGACACCGAGAGAGAGACTGTTATTAAAATGTATGGGAAGCCTTCAGTGTTGAAATGACAAAAAAGAGTGAAGAGAGAAAGGGTAAATCTAGTCAACAAGAACACTTGTCGCCGTCGTTTTCCGCCATTCTAAACTGCGTCTAATCCAGCGACATGCACTTGTTCGAAACTTGAGAATAAGTCAACTGTATGGCATAACGAAAGTGACGAAAATTGGTCTAGAGGAGATTTTCACTTAATTGGAGATGTTCTTATTTTTCGAGGAACACCTTAATTTTCCCATAATGTTCCCTATTCTTCATGTTTCGTTTTCTTTGTCGTCTTAGATTTTGTTCTGCTCTTCGACCTCTTTTCGCCCTGTGTTCTGTGTTTGCATTCCCGATTATTTTTGATGAATTAACTGAACTATTTGATGAGTTGTGTGGAAGAGAGAAGAAACGAAAGTGAAAGAAAAAAAGATAGGAAGAGCAGGAATTGATCATTCGGCTGGTTCCATCTGTGTTTTTTTCCTCATACAAACTCCCACGAACAGCTGATTTGATATTGTTTCCGGTCGCAGTTGACATGAAAAGCTCAAGCTGGAATCGTTTTTTTTTTTGATAAAAAGGAATCTAGACAGTTGGTGGATTTAAAAATAGCTAATCTGTGTCTTGATTCCATTTTATCAAGACACAGAGATATAAGAAAGACCTTGGGAAAAATCCAAAGTTTGTTTCGATATATAAAGTACGGAAACCGTAAAACCTGTAATAGAAGGGCTCCCTAACTTTAAACTTTGAGCTCAATCATCTCGGTTCTTGTCAAAGATATGAGAAAGTAATCAATTAATACATTTTTTATCATAATGTCATCAATATTTCATTAGTGTAAAGATTTTTGATATCTCTTATAGCAACTGACAAGGGAAGGCTTTTTAGACAACGGTTGAGAATTTTGGTTGATTACGACTGTTGATTTTCACATTTCTCAACTTCCGATTTGCAGAATTTGAAAAGTTAG</canonical>
            <polymorphic>GAGACACCGAGAGAGAGACTGTTATTAAAATGTATGGGAAGCCTTCAGTGTTGAAATGACAAAAAAGAGTGAAGAGAGAAAGGGTAAATCTAGTCAACAAGAACACTTGTCGCCGTCGTTTTCCGCCATTCTAAACTGCGTCTAATCCAGCGACATGCACTTGTTCGAAACTTGAGAATAAGTCAACTGTATGGCATAACGAAAGTGACGAAAATTGGTCTAGAGGAGATTTTCACTTAATTGGAGATGTTCTTATTTTTCGAGGAACACCTTAATTTTCCCATAATGTTCCCTATTCTTCATGTTTCGTTTTCTTTGTCGTCTTAGATTTTGTTCTGCTCTTCGACCTCTTTTCGCCCTGTGTTCTGTGTTTGCATTCCCGATTATTTTTGATGAATTAACTGAACTATTTGATGAGTTGTGTGGAAGAGAGAAGAAACGAAAGTGAAAGAAAAAAAGATAGGAAGAGCAGGAATTGATCATTCGGCTGGTTCCATCTSTGTTTTTTTCCTCATACAAACTCCCACGAACAGCTGATTTGATATTGTTTCCGGTCGCAGTTGACATGAAAAGCTCAAGCTGGAATCGTTTTTTTTTTTGATAAAAAGGAATCTAGACAGTTGGTGGATTTAAAAATAGCTAATCTGTGTCTTGATTCCATTTTATCAAGACACAGAGATATAAGAAAGACCTTGGGAAAAATCCAAAGTTTGTTTCGATATATAAAGTACGGAAACCGTAAAACCTGTAATAGAAGGGCTCCCTAACTTTAAACTTTGAGCTCAATCATCTCGGTTCTTGTCAAAGATATGAGAAAGTAATCAATTAATACATTTTTTATCATAATGTCATCAATATTTCATTAGTGTAAAGATTTTTGATATCTCTTATAGCAACTGACAAGGGAAGGCTTTTTAGACAACGGTTGAGAATTTTGGTTGATTACGACTGTTGATTTTCACATTTCTCAACTTCCGATTTGCAGAATTTGAAAAGTTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>195 100 94 93 55 54 53 48 44 39 34 34 28 24 24 23 22 21 7 6 2</canonical_bands>
                <polymorphic_bands>195 100 94 93 79 54 53 48 44 39 34 34 28 24 23 22 21 7 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAGAGAAGAAACGAAAGTGA</pcr_primer_p1>
		<pcr_primer_p2>CTGTGTCTTGATAAAATGGAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAGAGAAGAAACGAAAGTGAAAGAAAAAAAGATAGGAAGAGCAGGAATTGATCATTCGGCTGGTTCCATCTGTGTTTTTTTCCTCATACAAACTCCCACGAACAGCTGATTTGATATTGTTTCCGGTCGCAGTTGACATGAAAAGCTCAAGCTGGAATCGTTTTTTTTTTTGATAAAAAGGAATCTAGACAGTTGGTGGATTTAAAAATAGCTAATCTGTGTCTTGATTCCATTTTATCAAGACACAG</canonical_amplicon>
		<polymorphic_amplicon>AAGAGAGAAGAAACGAAAGTGAAAGAAAAAAAGATAGGAAGAGCAGGAATTGATCATTCGGCTGGTTCCATCTSTGTTTTTTTCCTCATACAAACTCCCACGAACAGCTGATTTGATATTGTTTCCGGTCGCAGTTGACATGAAAAGCTCAAGCTGGAATCGTTTTTTTTTTTGATAAAAAGGAATCTAGACAGTTGGTGGATTTAAAAATAGCTAATCTGTGTCTTGATTCCATTTTATCAAGACACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6891</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>299389</contig_pos>
        <strand></strand>
        <context>agagcctggc[T/C]gaataacgcg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGTTTTCTCGTCTTTCAACGCCTATCGCACGCTGTTTCAGAGAGCCTGGC</left_flank>
        <right_flank>GAATAACGCGCCTTCATTGGCTGAGTAACAACGATGATCTATCAATAATA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCCCATCCCACTTTTGTTCATTTTCTTCGGTATCAACGGGTTTTGTCTTCGTTATTTCCTTTTCATCTCCATCTCTTCCGTGACTCCACCTCCTTTTCCAATTTTCTGGAGATTATCAATTCTTTCAAAAAACGCGCGCTTCGATCCTACCGACGGGTAACAAACTATTGAAAAAAAACCGTATATTTATTAAATACGTAATTAGCTTTTTTAACTTTTGAACGATTATAATTGCGATTAACTTTGATTAATGATTGAAAAAAAATTAATAAATTGTTTTCAAATTAAAAGTTTGTTTTCTTTTTGTACAGGCAGAGGAATGTATTGAGAATTGGCAATAGTTGGGATTGAATGTCAGAACTTACAAGACAGAACAAACTATTTTTCTGGTACAAAGAAACCATAACTACAACTACTGAAACCCAAAATGTACTTATTTTCCATAACAGTTTTCTCGTCTTTCAACGCCTATCGCACGCTGTTTCAGAGAGCCTGGCTGAATAACGCGCCTTCATTGGCTGAGTAACAACGATGATCTATCAATAATAAATAGATGAAATCTGTGTCCACTTCAAAATTTAAAATTTTAATTTGTCCTACGAATTCGTTGAGGCGCGTTTTCCGACACTCCACCGATTCCGAGGAAGGGGTTGTCACCGAGGAACCGATTCCGAGGAAATCGGGGCGGAGTTTCAATTTTTGCAGTGTCGCNNNNNNNNNNTTTGAGTGAGATGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCCTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGTATACACAATTTCAC</canonical>
            <polymorphic>CATCCCATCCCACTTTTGTTCATTTTCTTCGGTATCAACGGGTTTTGTCTTCGTTATTTCCTTTTCATCTCCATCTCTTCCGTGACTCCACCTCCTTTTCCAATTTTCTGGAGATTATCAATTCTTTCAAAAAACGCGCGCTTCGATCCTACCGACGGGTAACAAACTATTGAAAAAAAACCGTATATTTATTAAATACGTAATTAGCTTTTTTAACTTTTGAACGATTATAATTGCGATTAACTTTGATTAATGATTGAAAAAAAATTAATAAATTGTTTTCAAATTAAAAGTTTGTTTTCTTTTTGTACAGGCAGAGGAATGTATTGAGAATTGGCAATAGTTGGGATTGAATGTCAGAACTTACAAGACAGAACAAACTATTTTTCTGGTACAAAGAAACCATAACTACAACTACTGAAACCCAAAATGTACTTATTTTCCATAACAGTTTTCTCGTCTTTCAACGCCTATCGCACGCTGTTTCAGAGAGCCTGGCYGAATAACGCGCCTTCATTGGCTGAGTAACAACGATGATCTATCAATAATAAATAGATGAAATCTGTGTCCACTTCAAAATTTAAAATTTTAATTTGTCCTACGAATTCGTTGAGGCGCGTTTTCCGACACTCCACCGATTCCGAGGAAGGGGTTGTCACCGAGGAACCGATTCCGAGGAAATCGGGGCGGAGTTTCAATTTTTGCAGTGTCGCNNNNNNNNNNTTTGAGTGAGATGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCCTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGTATACACAATTTCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>286 232 207 82 64 42 22 22 21 17 5</canonical_bands>
                <polymorphic_bands>286 232 207 82 64 42 27 22 21 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAGTTGGGATTGAATGTCAG</pcr_primer_p1>
		<pcr_primer_p2>TAAATTTTGAAGTGGACACAGAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATAGTTGGGATTGAATGTCAGAACTTACAAGACAGAACAAACTATTTTTCTGGTACAAAGAAACCATAACTACAACTACTGAAACCCAAAATGTACTTATTTTCCATAACAGTTTTCTCGTCTTTCAACGCCTATCGCACGCTGTTTCAGAGAGCCTGGCTGAATAACGCGCCTTCATTGGCTGAGTAACAACGATGATCTATCAATAATAAATAGATGAAATCTGTGTCCACTTCAAAATTTA</canonical_amplicon>
		<polymorphic_amplicon>AATAGTTGGGATTGAATGTCAGAACTTACAAGACAGAACAAACTATTTTTCTGGTACAAAGAAACCATAACTACAACTACTGAAACCCAAAATGTACTTATTTTCCATAACAGTTTTCTCGTCTTTCAACGCCTATCGCACGCTGTTTCAGAGAGCCTGGCYGAATAACGCGCCTTCATTGGCTGAGTAACAACGATGATCTATCAATAATAAATAGATGAAATCTGTGTCCACTTCAAAATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6892</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>299168</contig_pos>
        <strand></strand>
        <context>TAATAAATTG[T/C]TTTCAAATTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TATAATTGCGATTAACTTTGATTAATGATTGAAAAAAAATTAATAAATTG</left_flank>
        <right_flank>TTTCAAATTAAAAGTTTGTTTTCTTTTTGTACAGGCAGAGGAATGTATTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCAGCAACAATACATATTTATTCATTATTGTGTTCTTCAAGTCCTTCAAGGATCTTCTCCATCACCCACGTCATCTTCATCAGGTGCTCATCACAACGCTGGTTTTGTACAAGATGGAATGATGGTCGAATCGGGATTCTGATTCTCCTTTTCTCCGAATATTTACCTTGTTCTAGTCTATTACTATTCGCCCTCTTCCCACATTCATTTTTCTTCCCATCCCATCCCACTTTTGTTCATTTTCTTCGGTATCAACGGGTTTTGTCTTCGTTATTTCCTTTTCATCTCCATCTCTTCCGTGACTCCACCTCCTTTTCCAATTTTCTGGAGATTATCAATTCTTTCAAAAAACGCGCGCTTCGATCCTACCGACGGGTAACAAACTATTGAAAAAAAACCGTATATTTATTAAATACGTAATTAGCTTTTTTAACTTTTGAACGATTATAATTGCGATTAACTTTGATTAATGATTGAAAAAAAATTAATAAATTGTTTTCAAATTAAAAGTTTGTTTTCTTTTTGTACAGGCAGAGGAATGTATTGAGAATTGGCAATAGTTGGGATTGAATGTCAGAACTTACAAGACAGAACAAACTATTTTTCTGGTACAAAGAAACCATAACTACAACTACTGAAACCCAAAATGTACTTATTTTCCATAACAGTTTTCTCGTCTTTCAACGCCTATCGCACGCTGTTTCAGAGAGCCTGGCTGAATAACGCGCCTTCATTGGCTGAGTAACAACGATGATCTATCAATAATAAATAGATGAAATCTGTGTCCACTTCAAAATTTAAAATTTTAATTTGTCCTACGAATTCGTTGAGGCGCGTTTTCCGACACTCCACCGATTCCGAGGAAGGGGTTGTCACCGAGGAACCGATTCCGAGGAAATCGGGGCGGAGTTTCAATTTTTGCAGTGTCGCNNNNNNNNNNTTTGAGTGAGATGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGT</canonical>
            <polymorphic>TTTTTCAGCAACAATACATATTTATTCATTATTGTGTTCTTCAAGTCCTTCAAGGATCTTCTCCATCACCCACGTCATCTTCATCAGGTGCTCATCACAACGCTGGTTTTGTACAAGATGGAATGATGGTCGAATCGGGATTCTGATTCTCCTTTTCTCCGAATATTTACCTTGTTCTAGTCTATTACTATTCGCCCTCTTCCCACATTCATTTTTCTTCCCATCCCATCCCACTTTTGTTCATTTTCTTCGGTATCAACGGGTTTTGTCTTCGTTATTTCCTTTTCATCTCCATCTCTTCCGTGACTCCACCTCCTTTTCCAATTTTCTGGAGATTATCAATTCTTTCAAAAAACGCGCGCTTCGATCCTACCGACGGGTAACAAACTATTGAAAAAAAACCGTATATTTATTAAATACGTAATTAGCTTTTTTAACTTTTGAACGATTATAATTGCGATTAACTTTGATTAATGATTGAAAAAAAATTAATAAATTGYTTTCAAATTAAAAGTTTGTTTTCTTTTTGTACAGGCAGAGGAATGTATTGAGAATTGGCAATAGTTGGGATTGAATGTCAGAACTTACAAGACAGAACAAACTATTTTTCTGGTACAAAGAAACCATAACTACAACTACTGAAACCCAAAATGTACTTATTTTCCATAACAGTTTTCTCGTCTTTCAACGCCTATCGCACGCTGTTTCAGAGAGCCTGGCTGAATAACGCGCCTTCATTGGCTGAGTAACAACGATGATCTATCAATAATAAATAGATGAAATCTGTGTCCACTTCAAAATTTAAAATTTTAATTTGTCCTACGAATTCGTTGAGGCGCGTTTTCCGACACTCCACCGATTCCGAGGAAGGGGTTGTCACCGAGGAACCGATTCCGAGGAAATCGGGGCGGAGTTTCAATTTTTGCAGTGTCGCNNNNNNNNNNTTTGAGTGAGATGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATTATAATTGCGATTAACTTT</pcr_primer_p1>
		<pcr_primer_p2>GTTGAAAGACGAGAAAACTGTTA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CGATTATAATTGCGATTAACTTTGATTAATGATTGAAAAAAAATTAATAAATTGTTTTCAAATTAAAAGTTTGTTTTCTTTTTGTACAGGCAGAGGAATGTATTGAGAATTGGCAATAGTTGGGATTGAATGTCAGAACTTACAAGACAGAACAAACTATTTTTCTGGTACAAAGAAACCATAACTACAACTACTGAAACCCAAAATGTACTTATTTTCCATAACAGTTTTCTCGTCTTTCAAC</canonical_amplicon>
		<polymorphic_amplicon>CGATTATAATTGCGATTAACTTTGATTAATGATTGAAAAAAAATTAATAAATTGYTTTCAAATTAAAAGTTTGTTTTCTTTTTGTACAGGCAGAGGAATGTATTGAGAATTGGCAATAGTTGGGATTGAATGTCAGAACTTACAAGACAGAACAAACTATTTTTCTGGTACAAAGAAACCATAACTACAACTACTGAAACCCAAAATGTACTTATTTTCCATAACAGTTTTCTCGTCTTTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6963</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>382463</contig_pos>
        <strand>+</strand>
        <context>CGACTGAGCG[C/T]CATTTCGCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACAACGCGGGGAACAGGAGAACGCAACATTTCGAAAGTACGACTGAGCG</left_flank>
        <right_flank>CATTTCGCAATACATATTTACGGGAAAAGACCCCGCAAATTGAAAAACAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCATTCCGATGGATGTTGCTTTACCTGAGGTAGCAATGATTTCTTCGTTCAAATAAATTACAAGATGAAATATGTGATCGAGTATCTGGTTGATGAGTTCTGCATCTTCACTACCGCGTCGGATAACATCTGAACATCATAAAAACTGTCTTGACTAGTTTTGGCATTCCCGAACCTTTAACAGTGCGCATACCGAAGTTGTACCGGATGAGGTCTGCCGCAGAACTCTCCAGATCTACATGACCATTGAGAACAGCCACTGTGAAACGACCAAGCTGGAAAAGTAGTGACTTTTGTGAATGAATACATAAATATCAGCTTACATCTCGTACTGCACTTTCCTCGGGATTATTCATTGTGGGGCTATTGTTCTTCTGCAAATTGCCAAAAATTACTGATAACTTTTTATAGAAATTTTTAGGCCCTTGAGATATTTAGCGGAATGTAAACAACGCGGGGAACAGGAGAACGCAACATTTCGAAAGTACGACTGAGCGCCATTTCGCAATACATATTTACGGGAAAAGACCCCGCAAATTGAAAAACAAACGTTTTCCGGGAAAAGTGGGCGGAGCCTAAATTGCAAGACTGACACGGTTTTTCTCTTAGCAGTATTCAAATATATAAAACACTGTCGTGGGCAACTTGAAATTTACGCTCCGCGCGCCTTCGTCGGGAATCTGTAGGGTCTCCGAAATAATGTAATAAAAATATATTTCTGAAAGGCTCCTTTCCATAATAATTGAATTATGGAGAAAGAAGAACTTTTCTGGTCTTTGAACAAGTTTGGAATTGGAAAATTCATGCGCATCTGTGCTCAATCTTCATGGTACAATAAATAATCTATATTGATCAAACATTCGACGGAAAGAGGCGGTAGCTAAAACGTAGAAGGCAATAAAATTATGAAGAAAATACACAGTATTTATAGGTTAGACGCAGTGATCTACACTTGTGGGTTTCTGAAGTTCTGTCCGGCATAAACTGCATCGGCTCCG</canonical>
            <polymorphic>TTCCATTCCGATGGATGTTGCTTTACCTGAGGTAGCAATGATTTCTTCGTTCAAATAAATTACAAGATGAAATATGTGATCGAGTATCTGGTTGATGAGTTCTGCATCTTCACTACCGCGTCGGATAACATCTGAACATCATAAAAACTGTCTTGACTAGTTTTGGCATTCCCGAACCTTTAACAGTGCGCATACCGAAGTTGTACCGGATGAGGTCTGCCGCAGAACTCTCCAGATCTACATGACCATTGAGAACAGCCACTGTGAAACGACCAAGCTGGAAAAGTAGTGACTTTTGTGAATGAATACATAAATATCAGCTTACATCTCGTACTGCACTTTCCTCGGGATTATTCATTGTGGGGCTATTGTTCTTCTGCAAATTGCCAAAAATTACTGATAACTTTTTATAGAAATTTTTAGGCCCTTGAGATATTTAGCGGAATGTAAACAACGCGGGGAACAGGAGAACGCAACATTTCGAAAGTACGACTGAGCGYCATTTCGCAATACATATTTACGGGAAAAGACCCCGCAAATTGAAAAACAAACGTTTTCCGGGAAAAGTGGGCGGAGCCTAAATTGCAAGACTGACACGGTTTTTCTCTTAGCAGTATTCAAATATATAAAACACTGTCGTGGGCAACTTGAAATTTACGCTCCGCGCGCCTTCGTCGGGAATCTGTAGGGTCTCCGAAATAATGTAATAAAAATATATTTCTGAAAGGCTCCTTTCCATAATAATTGAATTATGGAGAAAGAAGAACTTTTCTGGTCTTTGAACAAGTTTGGAATTGGAAAATTCATGCGCATCTGTGCTCAATCTTCATGGTACAATAAATAATCTATATTGATCAAACATTCGACGGAAAGAGGCGGTAGCTAAAACGTAGAAGGCAATAAAATTATGAAGAAAATACACAGTATTTATAGGTTAGACGCAGTGATCTACACTTGTGGGTTTCTGAAGTTCTGTCCGGCATAAACTGCATCGGCTCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>309 190 190 167 142 2</canonical_bands>
                <polymorphic_bands>476 190 190 142 2</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAGAAATTTTTAGGCCCTTGA</pcr_primer_p1>
		<pcr_primer_p2>CCACGACAGTGTTTTATATATTTG</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>ATAGAAATTTTTAGGCCCTTGAGATATTTAGCGGAATGTAAACAACGCGGGGAACAGGAGAACGCAACATTTCGAAAGTACGACTGAGCGCCATTTCGCAATACATATTTACGGGAAAAGACCCCGCAAATTGAAAAACAAACGTTTTCCGGGAAAAGTGGGCGGAGCCTAAATTGCAAGACTGACACGGTTTTTCTCTTAGCAGTATTCAAATATATAAAACACTGTCGTGG</canonical_amplicon>
		<polymorphic_amplicon>ATAGAAATTTTTAGGCCCTTGAGATATTTAGCGGAATGTAAACAACGCGGGGAACAGGAGAACGCAACATTTCGAAAGTACGACTGAGCGYCATTTCGCAATACATATTTACGGGAAAAGACCCCGCAAATTGAAAAACAAACGTTTTCCGGGAAAAGTGGGCGGAGCCTAAATTGCAAGACTGACACGGTTTTTCTCTTAGCAGTATTCAAATATATAAAACACTGTCGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6964</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>382261</contig_pos>
        <strand>+</strand>
        <context>AGTGACTTTT[A/G]TGAATGAATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGAGAACAGCCACTGTGAAACGACCAAGCTGGAAAAGTAGTGACTTTT</left_flank>
        <right_flank>TGAATGAATACATAAATATCAGCTTACATCTCGTACTGCACTTTCCTCGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGAAAACGAAAACAACTTCTTCACAAAAAACTTCGGAATTTAAACCTTTGCATTTGTTGTATGTGTGCATAATTGCTTCTTTACTAGCATCCACGTGCTGCACGACATCACGAATTGTATAGGCTTCATTCACCTGCATTCCAAGCCACACTTCGTACATCAAGTGCATCCGCTTTCGAAGTTCAATGAAATGGTGATTTTCCATTCCGATGGATGTTGCTTTACCTGAGGTAGCAATGATTTCTTCGTTCAAATAAATTACAAGATGAAATATGTGATCGAGTATCTGGTTGATGAGTTCTGCATCTTCACTACCGCGTCGGATAACATCTGAACATCATAAAAACTGTCTTGACTAGTTTTGGCATTCCCGAACCTTTAACAGTGCGCATACCGAAGTTGTACCGGATGAGGTCTGCCGCAGAACTCTCCAGATCTACATGACCATTGAGAACAGCCACTGTGAAACGACCAAGCTGGAAAAGTAGTGACTTTTGTGAATGAATACATAAATATCAGCTTACATCTCGTACTGCACTTTCCTCGGGATTATTCATTGTGGGGCTATTGTTCTTCTGCAAATTGCCAAAAATTACTGATAACTTTTTATAGAAATTTTTAGGCCCTTGAGATATTTAGCGGAATGTAAACAACGCGGGGAACAGGAGAACGCAACATTTCGAAAGTACGACTGAGCGCCATTTCGCAATACATATTTACGGGAAAAGACCCCGCAAATTGAAAAACAAACGTTTTCCGGGAAAAGTGGGCGGAGCCTAAATTGCAAGACTGACACGGTTTTTCTCTTAGCAGTATTCAAATATATAAAACACTGTCGTGGGCAACTTGAAATTTACGCTCCGCGCGCCTTCGTCGGGAATCTGTAGGGTCTCCGAAATAATGTAATAAAAATATATTTCTGAAAGGCTCCTTTCCATAATAATTGAATTATGGAGAAAGAAGAACTTTTCTGGTCTTTGAACAAGTTTGGAATTGG</canonical>
            <polymorphic>TTCTGAAAACGAAAACAACTTCTTCACAAAAAACTTCGGAATTTAAACCTTTGCATTTGTTGTATGTGTGCATAATTGCTTCTTTACTAGCATCCACGTGCTGCACGACATCACGAATTGTATAGGCTTCATTCACCTGCATTCCAAGCCACACTTCGTACATCAAGTGCATCCGCTTTCGAAGTTCAATGAAATGGTGATTTTCCATTCCGATGGATGTTGCTTTACCTGAGGTAGCAATGATTTCTTCGTTCAAATAAATTACAAGATGAAATATGTGATCGAGTATCTGGTTGATGAGTTCTGCATCTTCACTACCGCGTCGGATAACATCTGAACATCATAAAAACTGTCTTGACTAGTTTTGGCATTCCCGAACCTTTAACAGTGCGCATACCGAAGTTGTACCGGATGAGGTCTGCCGCAGAACTCTCCAGATCTACATGACCATTGAGAACAGCCACTGTGAAACGACCAAGCTGGAAAAGTAGTGACTTTTRTGAATGAATACATAAATATCAGCTTACATCTCGTACTGCACTTTCCTCGGGATTATTCATTGTGGGGCTATTGTTCTTCTGCAAATTGCCAAAAATTACTGATAACTTTTTATAGAAATTTTTAGGCCCTTGAGATATTTAGCGGAATGTAAACAACGCGGGGAACAGGAGAACGCAACATTTCGAAAGTACGACTGAGCGCCATTTCGCAATACATATTTACGGGAAAAGACCCCGCAAATTGAAAAACAAACGTTTTCCGGGAAAAGTGGGCGGAGCCTAAATTGCAAGACTGACACGGTTTTTCTCTTAGCAGTATTCAAATATATAAAACACTGTCGTGGGCAACTTGAAATTTACGCTCCGCGCGCCTTCGTCGGGAATCTGTAGGGTCTCCGAAATAATGTAATAAAAATATATTTCTGAAAGGCTCCTTTCCATAATAATTGAATTATGGAGAAAGAAGAACTTTTCTGGTCTTTGAACAAGTTTGGAATTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>207 157 81 76 73 42 38 37 34 30 27 26 26 25 24 22 16 16 9 8 8 5 5 4 2 2</canonical_bands>
                <polymorphic_bands>207 157 81 76 73 47 42 37 34 30 27 26 26 25 24 22 16 16 8 8 5 5 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGATAACATCTGAACATCATA</pcr_primer_p1>
		<pcr_primer_p2>AATAGCCCCACAATGAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGGATAACATCTGAACATCATAAAAACTGTCTTGACTAGTTTTGGCATTCCCGAACCTTTAACAGTGCGCATACCGAAGTTGTACCGGATGAGGTCTGCCGCAGAACTCTCCAGATCTACATGACCATTGAGAACAGCCACTGTGAAACGACCAAGCTGGAAAAGTAGTGACTTTTGTGAATGAATACATAAATATCAGCTTACATCTCGTACTGCACTTTCCTCGGGATTATTCATTGTGGGGCTATT</canonical_amplicon>
		<polymorphic_amplicon>CGGATAACATCTGAACATCATAAAAACTGTCTTGACTAGTTTTGGCATTCCCGAACCTTTAACAGTGCGCATACCGAAGTTGTACCGGATGAGGTCTGCCGCAGAACTCTCCAGATCTACATGACCATTGAGAACAGCCACTGTGAAACGACCAAGCTGGAAAAGTAGTGACTTTTRTGAATGAATACATAAATATCAGCTTACATCTCGTACTGCACTTTCCTCGGGATTATTCATTGTGGGGCTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6965</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>425839</contig_pos>
        <strand>+</strand>
        <context>GAAACAGTTA[C/G]TCTGTGAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CACGATGTTCGATGGATCCATTCGAGCGATCTTCATTTCTGAAACAGTTA</left_flank>
        <right_flank>TCTGTGAATTAGGCGAGTACACTTAATCTTACGGAAATGATTCTCGAGCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAAACAAACAGCAGCCGCTAAAGAAATTTGAATAAGCGAGGAGGGGAAAAAATAAATTGGGTAGAAGAAGAAGATGGCGCGGTGGTGCATTCGAATTTTTCATGTTTATTCAAGTTCAAAGAACAAAAAGAAAGGCGAAAACGAAAACTGACGGGCGATAAACTCCTTAAATTTCTAGAACCGTTTCTTCTCTAAAGCCTTCACCACGACTGGGTGACGAATTTTAGGTACCAGAAATGAAGAGATATGGATGATGATGATGGTGGTTAATAAAATAAAATAGAGGAAAAAGGAATAACAAGATCAAGAGAAAAGAAAATAAAAAAAGATGTTCAGCATAAAAATGTGAATAGAGGCAGTGAAGTTCTTCTAACAAAAGAAGAACGCCGGCTTGTAAAAAAAAAATACGAAGTGTTGTAGATTATGCCATTTCTATGGCTTCCAACTCCACGATGTTCGATGGATCCATTCGAGCGATCTTCATTTCTGAAACAGTTACTCTGTGAATTAGGCGAGTACACTTAATCTTACGGAAATGATTCTCGAGCACATTGATCATGTTCATCGAGTCTTCCGAGTCGATCAAATTGATGGCGATTCCAGTCTTTCCGAATCGTCCAGTTCTTCCGATACGGTGAAGATAAGTTTCACAATCAGGTTGTGTGAAGCCGTCAATGACCATTGGACTATCATGCTCGTTGTACTTGATCGGTAGGTCGTAATTAATCACAACGGACACCTGCGCAACGTCAATTCCACGAGCGAATACATTCGTCGTGATGAGCACTTTGAAGTCGCCGCGTTTGAATCGAATGATTGTATCAGCTCGCTCGACGACACTCATATCTCCATGGAGCACATCAACCTTGTGGCCACGTGCCTTCATGTTCTCGTACAACCACATAACACTGGCCTTCGTGTGACAGAAAATGACGGATGAGGCGACAGCCAGTCCACTGTACAGATTAACGATGGCCTGTAAATTACAAATCGTTTCTT</canonical>
            <polymorphic>ACAAACAAACAGCAGCCGCTAAAGAAATTTGAATAAGCGAGGAGGGGAAAAAATAAATTGGGTAGAAGAAGAAGATGGCGCGGTGGTGCATTCGAATTTTTCATGTTTATTCAAGTTCAAAGAACAAAAAGAAAGGCGAAAACGAAAACTGACGGGCGATAAACTCCTTAAATTTCTAGAACCGTTTCTTCTCTAAAGCCTTCACCACGACTGGGTGACGAATTTTAGGTACCAGAAATGAAGAGATATGGATGATGATGATGGTGGTTAATAAAATAAAATAGAGGAAAAAGGAATAACAAGATCAAGAGAAAAGAAAATAAAAAAAGATGTTCAGCATAAAAATGTGAATAGAGGCAGTGAAGTTCTTCTAACAAAAGAAGAACGCCGGCTTGTAAAAAAAAAATACGAAGTGTTGTAGATTATGCCATTTCTATGGCTTCCAACTCCACGATGTTCGATGGATCCATTCGAGCGATCTTCATTTCTGAAACAGTTASTCTGTGAATTAGGCGAGTACACTTAATCTTACGGAAATGATTCTCGAGCACATTGATCATGTTCATCGAGTCTTCCGAGTCGATCAAATTGATGGCGATTCCAGTCTTTCCGAATCGTCCAGTTCTTCCGATACGGTGAAGATAAGTTTCACAATCAGGTTGTGTGAAGCCGTCAATGACCATTGGACTATCATGCTCGTTGTACTTGATCGGTAGGTCGTAATTAATCACAACGGACACCTGCGCAACGTCAATTCCACGAGCGAATACATTCGTCGTGATGAGCACTTTGAAGTCGCCGCGTTTGAATCGAATGATTGTATCAGCTCGCTCGACGACACTCATATCTCCATGGAGCACATCAACCTTGTGGCCACGTGCCTTCATGTTCTCGTACAACCACATAACACTGGCCTTCGTGTGACAGAAAATGACGGATGAGGCGACAGCCAGTCCACTGTACAGATTAACGATGGCCTGTAAATTACAAATCGTTTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>425 281 214 80</canonical_bands>
                <polymorphic_bands>706 214 80</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTGTTGTAGATTATGCCATTTC</pcr_primer_p1>
		<pcr_primer_p2>CAACCTGATTGTGAAACTTATCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGTGTTGTAGATTATGCCATTTCTATGGCTTCCAACTCCACGATGTTCGATGGATCCATTCGAGCGATCTTCATTTCTGAAACAGTTACTCTGTGAATTAGGCGAGTACACTTAATCTTACGGAAATGATTCTCGAGCACATTGATCATGTTCATCGAGTCTTCCGAGTCGATCAAATTGATGGCGATTCCAGTCTTTCCGAATCGTCCAGTTCTTCCGATACGGTGAAGATAAGTTTCACAATCAGGTTG</canonical_amplicon>
		<polymorphic_amplicon>AGTGTTGTAGATTATGCCATTTCTATGGCTTCCAACTCCACGATGTTCGATGGATCCATTCGAGCGATCTTCATTTCTGAAACAGTTASTCTGTGAATTAGGCGAGTACACTTAATCTTACGGAAATGATTCTCGAGCACATTGATCATGTTCATCGAGTCTTCCGAGTCGATCAAATTGATGGCGATTCCAGTCTTTCCGAATCGTCCAGTTCTTCCGATACGGTGAAGATAAGTTTCACAATCAGGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6966</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>427504</contig_pos>
        <strand>+</strand>
        <context>CAGTTGACTT[C/T]GTGTACTTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATATCTGCAGGAACAGGAACTTTTTCATGAGGGTCCGTGTCAGTTGACTT</left_flank>
        <right_flank>GTGTACTTGTACTTCGGATCCTGAATCAAATTTGAATTATTTCTTTGACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGATTCTCCATATATCTTCCCATCTTTTCAACAACCTCTCCGATCTGTTTAGCCAACTCAAGTGTAGGTGCCAAGCAGATACACTGTGGGCACTTTAAATTTATGTCAATTCTACAGAGCATCGTGAGCACGAATGCAGCAGTCTTTCCAGTACCCGACTGAGCTTGTGCGATCAAGTTTGATGGTCTAAAATTTATTATTAGTTGTTTTTTTTAAACAATAACAACTAACGGTTCCATAAGAAGCAACGGCAAAGCAGTCTCCTGGATTCTTGTTGGGAATTGAAAATTGAGACTGTCAAGAGCCTGAAGGACTTCCGGCTTGAGACGAAGTTCCCGGAATGATGAAATCGAATAGAGTGGTGACTTTGGATCTTGACGTTGTACATCAACCACTGTATCTTTCATCATTTTGACTTCTTTTTGAATGAATTTATTGAGAAGTGCAATATCTGCAGGAACAGGAACTTTTTCATGAGGGTCCGTGTCAGTTGACTTCGTGTACTTGTACTTCGGATCCTGAATCAAATTTGAATTATTTCTTTGACTATAAATTTCGAAAACCAACCGGTTTAACTGCTTGCTGTCCAACTGCAAATTGTGGAGGTCCTGTTCTTTGTTGAGGTACGAAAGATGGGTTCGGTTGACCTCTGCCTCGTCCCATTTCTGGAAGCATTCTTTTATCAAAAAAAAACGTTAATCCAGCAAAATCTAAGCCACTAGTACAACATTATTCCCTCTCGATGTCTGATACTTACGTCCTTGACCGGGTCCACCAAAATCCATTTGTCCTCCTCCGCGTCCTCCTCTGTAATCACCAATGATAATTTTTACAATGTTTTATTCAACGGTTACCTGAATCCCCCTTGAAAACCTCCTCTCATTGCTGGTGGCGGACCTGACATGAATGGTGCTGGAATAATGATTTATAGAATTTCCCATAATTCTGAGTTTAGAGGTGAAGGGGGAGTGCATTTGGAGACAGTTAAGTGAATCATG</canonical>
            <polymorphic>TCAGATTCTCCATATATCTTCCCATCTTTTCAACAACCTCTCCGATCTGTTTAGCCAACTCAAGTGTAGGTGCCAAGCAGATACACTGTGGGCACTTTAAATTTATGTCAATTCTACAGAGCATCGTGAGCACGAATGCAGCAGTCTTTCCAGTACCCGACTGAGCTTGTGCGATCAAGTTTGATGGTCTAAAATTTATTATTAGTTGTTTTTTTTAAACAATAACAACTAACGGTTCCATAAGAAGCAACGGCAAAGCAGTCTCCTGGATTCTTGTTGGGAATTGAAAATTGAGACTGTCAAGAGCCTGAAGGACTTCCGGCTTGAGACGAAGTTCCCGGAATGATGAAATCGAATAGAGTGGTGACTTTGGATCTTGACGTTGTACATCAACCACTGTATCTTTCATCATTTTGACTTCTTTTTGAATGAATTTATTGAGAAGTGCAATATCTGCAGGAACAGGAACTTTTTCATGAGGGTCCGTGTCAGTTGACTTYGTGTACTTGTACTTCGGATCCTGAATCAAATTTGAATTATTTCTTTGACTATAAATTTCGAAAACCAACCGGTTTAACTGCTTGCTGTCCAACTGCAAATTGTGGAGGTCCTGTTCTTTGTTGAGGTACGAAAGATGGGTTCGGTTGACCTCTGCCTCGTCCCATTTCTGGAAGCATTCTTTTATCAAAAAAAAACGTTAATCCAGCAAAATCTAAGCCACTAGTACAACATTATTCCCTCTCGATGTCTGATACTTACGTCCTTGACCGGGTCCACCAAAATCCATTTGTCCTCCTCCGCGTCCTCCTCTGTAATCACCAATGATAATTTTTACAATGTTTTATTCAACGGTTACCTGAATCCCCCTTGAAAACCTCCTCTCATTGCTGGTGGCGGACCTGACATGAATGGTGCTGGAATAATGATTTATAGAATTTCCCATAATTCTGAGTTTAGAGGTGAAGGGGGAGTGCATTTGGAGACAGTTAAGTGAATCATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGTTGTACATCAACCACTGTAT</pcr_primer_p1>
		<pcr_primer_p2>GTACCTCAACAAAGAACAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGTTGTACATCAACCACTGTATCTTTCATCATTTTGACTTCTTTTTGAATGAATTTATTGAGAAGTGCAATATCTGCAGGAACAGGAACTTTTTCATGAGGGTCCGTGTCAGTTGACTTCGTGTACTTGTACTTCGGATCCTGAATCAAATTTGAATTATTTCTTTGACTATAAATTTCGAAAACCAACCGGTTTAACTGCTTGCTGTCCAACTGCAAATTGTGGAGGTCCTGTTCTTTGTTGAGGTAC</canonical_amplicon>
		<polymorphic_amplicon>ACGTTGTACATCAACCACTGTATCTTTCATCATTTTGACTTCTTTTTGAATGAATTTATTGAGAAGTGCAATATCTGCAGGAACAGGAACTTTTTCATGAGGGTCCGTGTCAGTTGACTTYGTGTACTTGTACTTCGGATCCTGAATCAAATTTGAATTATTTCTTTGACTATAAATTTCGAAAACCAACCGGTTTAACTGCTTGCTGTCCAACTGCAAATTGTGGAGGTCCTGTTCTTTGTTGAGGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6967</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>464179</contig_pos>
        <strand>+</strand>
        <context>AAGATAAGCG[A/T]GTTCCAGCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGCATCCGATGCATTATTGCTATACTCATGATGATGATAAAGATAAGCG</left_flank>
        <right_flank>GTTCCAGCATTCTCAGTGTGTATCCCATCTCCATGTGCTGATGAAAATCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTCAGTAATAAGTTTTGACAAAAAACGTGCATTTTTTGAGCTTTGAACCTCGTTTTCTAGGATGTTCTCAAACGCGAAACCCATTTTCGAACATTTTCCTCTCATCTGAAATATTTTCAAAACAATTTTTTCAACGCTGAAAATTTCAGCGAATTCTCAAAGGATCTTCTATAAACGTTCCCTTATTAGAAGTAAAAAAAATTAATTCTTAGAAATTTTTTTTCAGGTGTACGACTATTTGAACGATATCGAAACTCTGACCGACCAAAAAATCTGCTACTTTGAATCATTTGCAACCGGTCCAAACGATTTGTTCCTCTCGAGAGATCAAGATCGTTGGGTCTACAAAGGTATGTCCTTTTCTTTTTTTTGAACAAATAATCATAACCAACAATTTCAGGTTATGAATGTCTTTTATCTGCTGGAGAAACTGTCTACTCAAAATCTGAGCATCCGATGCATTATTGCTATACTCATGATGATGATAAAGATAAGCGAGTTCCAGCATTCTCAGTGTGTATCCCATCTCCATGTGCTGATGAAAATCAAAAACTTCTGGAAGAATGGAGAAGAATAACACATCCAGAAGCCACTGAACCCATTACTTTCACCGCTTGTACACGATCGAGACACGAGAAACAGTGGTTCGAACTTCCAGTCCCAATTGCTGATTTTGGATTTAATATGGGATTGGTTATGCTCGTTGTGATGGCAACAATCTTCCATAACATGAGAGGAGATGACGCGAAAACCTGGTCCGCCAGAATCCTTCTTGCTTTTTCTGCAAAGACAAATTTCAAAAAGCTAGTTGCTCTTCCAAAAGATCCACAGAGCTGTATCACTTGTCTTCTGGGACTTCGATTCGGTTCAATGGTCTGGACGCTGATCGGACATTCATTCATTTTCGTTCAAGCTTATATGGAGAATGTTGAAGATTTCAAATCGTCAATGGTCGATAATTTCTTGAATCAATGGATTACCAATTTTACACTTTCTGT</canonical>
            <polymorphic>TTCTCAGTAATAAGTTTTGACAAAAAACGTGCATTTTTTGAGCTTTGAACCTCGTTTTCTAGGATGTTCTCAAACGCGAAACCCATTTTCGAACATTTTCCTCTCATCTGAAATATTTTCAAAACAATTTTTTCAACGCTGAAAATTTCAGCGAATTCTCAAAGGATCTTCTATAAACGTTCCCTTATTAGAAGTAAAAAAAATTAATTCTTAGAAATTTTTTTTCAGGTGTACGACTATTTGAACGATATCGAAACTCTGACCGACCAAAAAATCTGCTACTTTGAATCATTTGCAACCGGTCCAAACGATTTGTTCCTCTCGAGAGATCAAGATCGTTGGGTCTACAAAGGTATGTCCTTTTCTTTTTTTTGAACAAATAATCATAACCAACAATTTCAGGTTATGAATGTCTTTTATCTGCTGGAGAAACTGTCTACTCAAAATCTGAGCATCCGATGCATTATTGCTATACTCATGATGATGATAAAGATAAGCGWGTTCCAGCATTCTCAGTGTGTATCCCATCTCCATGTGCTGATGAAAATCAAAAACTTCTGGAAGAATGGAGAAGAATAACACATCCAGAAGCCACTGAACCCATTACTTTCACCGCTTGTACACGATCGAGACACGAGAAACAGTGGTTCGAACTTCCAGTCCCAATTGCTGATTTTGGATTTAATATGGGATTGGTTATGCTCGTTGTGATGGCAACAATCTTCCATAACATGAGAGGAGATGACGCGAAAACCTGGTCCGCCAGAATCCTTCTTGCTTTTTCTGCAAAGACAAATTTCAAAAAGCTAGTTGCTCTTCCAAAAGATCCACAGAGCTGTATCACTTGTCTTCTGGGACTTCGATTCGGTTCAATGGTCTGGACGCTGATCGGACATTCATTCATTTTCGTTCAAGCTTATATGGAGAATGTTGAAGATTTCAAATCGTCAATGGTCGATAATTTCTTGAATCAATGGATTACCAATTTTACACTTTCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAAGGTATGTCCTTTTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTCTGGATGTGTTATTCTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACAAAGGTATGTCCTTTTCTTTTTTTTGAACAAATAATCATAACCAACAATTTCAGGTTATGAATGTCTTTTATCTGCTGGAGAAACTGTCTACTCAAAATCTGAGCATCCGATGCATTATTGCTATACTCATGATGATGATAAAGATAAGCGAGTTCCAGCATTCTCAGTGTGTATCCCATCTCCATGTGCTGATGAAAATCAAAAACTTCTGGAAGAATGGAGAAGAATAACACATCCAGAAG</canonical_amplicon>
		<polymorphic_amplicon>ACAAAGGTATGTCCTTTTCTTTTTTTTGAACAAATAATCATAACCAACAATTTCAGGTTATGAATGTCTTTTATCTGCTGGAGAAACTGTCTACTCAAAATCTGAGCATCCGATGCATTATTGCTATACTCATGATGATGATAAAGATAAGCGWGTTCCAGCATTCTCAGTGTGTATCCCATCTCCATGTGCTGATGAAAATCAAAAACTTCTGGAAGAATGGAGAAGAATAACACATCCAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6968</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>464668</contig_pos>
        <strand>+</strand>
        <context>TTACCAATTT[C/T]ACACTTTCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAAATCGTCAATGGTCGATAATTTCTTGAATCAATGGATTACCAATTT</left_flank>
        <right_flank>ACACTTTCTGTTGATGTTTTCCTTACTCTTGGAGGAACTGTCCTTTCATA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGATAAGCGAGTTCCAGCATTCTCAGTGTGTATCCCATCTCCATGTGCTGATGAAAATCAAAAACTTCTGGAAGAATGGAGAAGAATAACACATCCAGAAGCCACTGAACCCATTACTTTCACCGCTTGTACACGATCGAGACACGAGAAACAGTGGTTCGAACTTCCAGTCCCAATTGCTGATTTTGGATTTAATATGGGATTGGTTATGCTCGTTGTGATGGCAACAATCTTCCATAACATGAGAGGAGATGACGCGAAAACCTGGTCCGCCAGAATCCTTCTTGCTTTTTCTGCAAAGACAAATTTCAAAAAGCTAGTTGCTCTTCCAAAAGATCCACAGAGCTGTATCACTTGTCTTCTGGGACTTCGATTCGGTTCAATGGTCTGGACGCTGATCGGACATTCATTCATTTTCGTTCAAGCTTATATGGAGAATGTTGAAGATTTCAAATCGTCAATGGTCGATAATTTCTTGAATCAATGGATTACCAATTTTACACTTTCTGTTGATGTTTTCCTTACTCTTGGAGGAACTGTCCTTTCATACAGTTGGTTCAGAAAATGGCTGAAAAACACTTCAGGTAATTTTTGTGACTTTTAAAGAATTAAGTGTTTACTAGTCTGACATCATTTGAAAGTGCAATTTCATTTTTTGCAGAAGAAGAGCCAACATGGACTTCATGGGGATACTGGCTCCGATTCTATCGTCACAGAGTTGTCCGTCTTTACCCTGCCTATCTCTACACTCTTCTAGCAGTTACCCTCCGTATTTCTGTGACCCACTTCCATCCAATGTGGCCTCCAACTGATCCAGCCATTCAATGTCCAAAGTACTGGTGGCAAAATGTTTTGTTTGTTAACAGTATTTTGGATAATCAGTGTATGCCATGGACTTGGTACATTGGAACCGAGTTCATTTACTACTTACTGTCTCCAATCTTCCTTCTCTCATTGAGAAAAGCTCCAAAACTTGGATTCGTGAGTTTTCAGAAGTGA</canonical>
            <polymorphic>AAGATAAGCGAGTTCCAGCATTCTCAGTGTGTATCCCATCTCCATGTGCTGATGAAAATCAAAAACTTCTGGAAGAATGGAGAAGAATAACACATCCAGAAGCCACTGAACCCATTACTTTCACCGCTTGTACACGATCGAGACACGAGAAACAGTGGTTCGAACTTCCAGTCCCAATTGCTGATTTTGGATTTAATATGGGATTGGTTATGCTCGTTGTGATGGCAACAATCTTCCATAACATGAGAGGAGATGACGCGAAAACCTGGTCCGCCAGAATCCTTCTTGCTTTTTCTGCAAAGACAAATTTCAAAAAGCTAGTTGCTCTTCCAAAAGATCCACAGAGCTGTATCACTTGTCTTCTGGGACTTCGATTCGGTTCAATGGTCTGGACGCTGATCGGACATTCATTCATTTTCGTTCAAGCTTATATGGAGAATGTTGAAGATTTCAAATCGTCAATGGTCGATAATTTCTTGAATCAATGGATTACCAATTTYACACTTTCTGTTGATGTTTTCCTTACTCTTGGAGGAACTGTCCTTTCATACAGTTGGTTCAGAAAATGGCTGAAAAACACTTCAGGTAATTTTTGTGACTTTTAAAGAATTAAGTGTTTACTAGTCTGACATCATTTGAAAGTGCAATTTCATTTTTTGCAGAAGAAGAGCCAACATGGACTTCATGGGGATACTGGCTCCGATTCTATCGTCACAGAGTTGTCCGTCTTTACCCTGCCTATCTCTACACTCTTCTAGCAGTTACCCTCCGTATTTCTGTGACCCACTTCCATCCAATGTGGCCTCCAACTGATCCAGCCATTCAATGTCCAAAGTACTGGTGGCAAAATGTTTTGTTTGTTAACAGTATTTTGGATAATCAGTGTATGCCATGGACTTGGTACATTGGAACCGAGTTCATTTACTACTTACTGTCTCCAATCTTCCTTCTCTCATTGAGAAAAGCTCCAAAACTTGGATTCGTGAGTTTTCAGAAGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGCTGTATCACTTGTCTTCTG</pcr_primer_p1>
		<pcr_primer_p2>AAAATTACCTGAAGTGTTTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGAGCTGTATCACTTGTCTTCTGGGACTTCGATTCGGTTCAATGGTCTGGACGCTGATCGGACATTCATTCATTTTCGTTCAAGCTTATATGGAGAATGTTGAAGATTTCAAATCGTCAATGGTCGATAATTTCTTGAATCAATGGATTACCAATTTTACACTTTCTGTTGATGTTTTCCTTACTCTTGGAGGAACTGTCCTTTCATACAGTTGGTTCAGAAAATGGCTGAAAAACACTTCAGGTAATTTT</canonical_amplicon>
		<polymorphic_amplicon>AGAGCTGTATCACTTGTCTTCTGGGACTTCGATTCGGTTCAATGGTCTGGACGCTGATCGGACATTCATTCATTTTCGTTCAAGCTTATATGGAGAATGTTGAAGATTTCAAATCGTCAATGGTCGATAATTTCTTGAATCAATGGATTACCAATTTYACACTTTCTGTTGATGTTTTCCTTACTCTTGGAGGAACTGTCCTTTCATACAGTTGGTTCAGAAAATGGCTGAAAAACACTTCAGGTAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6969</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>466613</contig_pos>
        <strand>+</strand>
        <context>GGATTCTGAA[A/C]TTCAATTGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTCTCCACCAAAAACCACTCTGAAACCCATTCCACAAACGGATTCTGAA</left_flank>
        <right_flank>TTCAATTGAAGACATCTGAGAAGGCGTAATATTCCTCTTCTTCGGAAATC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAGCTCAGTTTTCTCGATTCCTGTAAAAGATATCAAAGATGTGTCAACTAATAAAATATTGACGATATTCTGGTAAAGAATTTATAAGTTGAAAACTGTTTGATATATTTTACCGAAACCGAAATAAATTAACCCAAGTTAAAAGTTAGGGGGCCCTTCTAATACAGGTTTTACGGTAGCTATCAGGGGTTGCAACATCAAAATTTTTTTCAATGACTAGAATGAAAATTCAAAACCAAACAACAAATTTCAAATTTCAGGCCTACCTCTTCCATATGATCCCTGTTGTTTTGACCTACATGCTGGTTCCATTCCCAATCTACTTCAATACTCAAATTCCTCTCTTCATCCATTGCTTCGTTCAACTTCTCATCACTTACGTCTTCGCCATCATTTGCACAATGGTCAGTGAGCTTCCAGCTCTGAATATTGAAAGGCTACTGTTGTCTTCTCCACCAAAAACCACTCTGAAACCCATTCCACAAACGGATTCTGAACTTCAATTGAAGACATCTGAGAAGGCGTAATATTCCTCTTCTTCGGAAATCTCTATTTTCAAATCATTTCAAAAGAAACGGGACATTTGAGATATAGATTGGGGGATGACCGTTTCTTTGTTTTTCTCTCCGGTCCAACCCGCAAAACCCAATACGAGTAGTGACTCCTTTTTCAACATTTTTCACTTCATTCCGCCATTCACTTTTTCTTTTGTTAGCTCCTCTTTCATCTGCTTTACTTTTTTTTCTCTTCTAGACTCTGTAGTTCTGTTTTTTCTTCTTCTCTTGATGGTCTTTCAGTAATTGATTTCCCCCGGTCATCGGCTGTTCCACCTTCCTCGTTTCAATCTTTCTCCCATGTATATAGTTTTGTTTTGTTTCACAAAAATTTTAAAATTACTAAAAATAATAAAGATTTATAAAACAGTACATTCTATACACATCAAAGTATAAATTAATAGAAAGAGGGCTCATAACAGGACGATTCGGTTTTACTATCTG</canonical>
            <polymorphic>TTGAGCTCAGTTTTCTCGATTCCTGTAAAAGATATCAAAGATGTGTCAACTAATAAAATATTGACGATATTCTGGTAAAGAATTTATAAGTTGAAAACTGTTTGATATATTTTACCGAAACCGAAATAAATTAACCCAAGTTAAAAGTTAGGGGGCCCTTCTAATACAGGTTTTACGGTAGCTATCAGGGGTTGCAACATCAAAATTTTTTTCAATGACTAGAATGAAAATTCAAAACCAAACAACAAATTTCAAATTTCAGGCCTACCTCTTCCATATGATCCCTGTTGTTTTGACCTACATGCTGGTTCCATTCCCAATCTACTTCAATACTCAAATTCCTCTCTTCATCCATTGCTTCGTTCAACTTCTCATCACTTACGTCTTCGCCATCATTTGCACAATGGTCAGTGAGCTTCCAGCTCTGAATATTGAAAGGCTACTGTTGTCTTCTCCACCAAAAACCACTCTGAAACCCATTCCACAAACGGATTCTGAAMTTCAATTGAAGACATCTGAGAAGGCGTAATATTCCTCTTCTTCGGAAATCTCTATTTTCAAATCATTTCAAAAGAAACGGGACATTTGAGATATAGATTGGGGGATGACCGTTTCTTTGTTTTTCTCTCCGGTCCAACCCGCAAAACCCAATACGAGTAGTGACTCCTTTTTCAACATTTTTCACTTCATTCCGCCATTCACTTTTTCTTTTGTTAGCTCCTCTTTCATCTGCTTTACTTTTTTTTCTCTTCTAGACTCTGTAGTTCTGTTTTTTCTTCTTCTCTTGATGGTCTTTCAGTAATTGATTTCCCCCGGTCATCGGCTGTTCCACCTTCCTCGTTTCAATCTTTCTCCCATGTATATAGTTTTGTTTTGTTTCACAAAAATTTTAAAATTACTAAAAATAATAAAGATTTATAAAACAGTACATTCTATACACATCAAAGTATAAATTAATAGAAAGAGGGCTCATAACAGGACGATTCGGTTTTACTATCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCCAATCTACTTCAATACTCA</pcr_primer_p1>
		<pcr_primer_p2>GAAAATAGAGATTTCCGAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTCCCAATCTACTTCAATACTCAAATTCCTCTCTTCATCCATTGCTTCGTTCAACTTCTCATCACTTACGTCTTCGCCATCATTTGCACAATGGTCAGTGAGCTTCCAGCTCTGAATATTGAAAGGCTACTGTTGTCTTCTCCACCAAAAACCACTCTGAAACCCATTCCACAAACGGATTCTGAACTTCAATTGAAGACATCTGAGAAGGCGTAATATTCCTCTTCTTCGGAAATCTCTATTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTCCCAATCTACTTCAATACTCAAATTCCTCTCTTCATCCATTGCTTCGTTCAACTTCTCATCACTTACGTCTTCGCCATCATTTGCACAATGGTCAGTGAGCTTCCAGCTCTGAATATTGAAAGGCTACTGTTGTCTTCTCCACCAAAAACCACTCTGAAACCCATTCCACAAACGGATTCTGAAMTTCAATTGAAGACATCTGAGAAGGCGTAATATTCCTCTTCTTCGGAAATCTCTATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6970</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>467124</contig_pos>
        <strand>+</strand>
        <context>AAAATTAAAG[A/G]ATTTGAGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGAGGGCTCATAACAGGACGATTCGGTTTTACTATCTGAAAATTAAAG</left_flank>
        <right_flank>ATTTGAGAAAAAGAGATTTAAAGAATTTAAAGTTTAGACCTTGTTTCATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATCTGAGAAGGCGTAATATTCCTCTTCTTCGGAAATCTCTATTTTCAAATCATTTCAAAAGAAACGGGACATTTGAGATATAGATTGGGGGATGACCGTTTCTTTGTTTTTCTCTCCGGTCCAACCCGCAAAACCCAATACGAGTAGTGACTCCTTTTTCAACATTTTTCACTTCATTCCGCCATTCACTTTTTCTTTTGTTAGCTCCTCTTTCATCTGCTTTACTTTTTTTTCTCTTCTAGACTCTGTAGTTCTGTTTTTTCTTCTTCTCTTGATGGTCTTTCAGTAATTGATTTCCCCCGGTCATCGGCTGTTCCACCTTCCTCGTTTCAATCTTTCTCCCATGTATATAGTTTTGTTTTGTTTCACAAAAATTTTAAAATTACTAAAAATAATAAAGATTTATAAAACAGTACATTCTATACACATCAAAGTATAAATTAATAGAAAGAGGGCTCATAACAGGACGATTCGGTTTTACTATCTGAAAATTAAAGGATTTGAGAAAAAGAGATTTAAAGAATTTAAAGTTTAGACCTTGTTTCATTGATAGACTTCGAGAGCAACTCAACGACATTTTCGATCTTGGTCTTGTTGGAATTGATTCCAAATGTTCCGATTCTCCAGATTTTACCAACTGTGGCACCCAGACCACCAGCGATCTGAAAGAACCCTACGATAGTTAGAACTTCATAAAAAACAAAATACAGTTCCGCAATTCATCCATGACAAGATTTTTTTAAAAATTACCTCAACTCCATTAATAAGCATTTTTCCAGCAACATCCTTCCAGTCAATTCTTTCTGGAACCTTGACTGTTGTCAAACATGGCAATCTCAACTTCTCATCCTCCACAAATGGCTCCAAGCCGTGATTCTTCAACGCAGCATACAATACTTGAGCATTATCCTTATGTCTCTGAACTGACTCATCAATTCCTTCCTTTGCAATCGCCGAAAGTGCAGCACGAAGAGCATAGACAGTGGAGATTGGAGCAG</canonical>
            <polymorphic>ACATCTGAGAAGGCGTAATATTCCTCTTCTTCGGAAATCTCTATTTTCAAATCATTTCAAAAGAAACGGGACATTTGAGATATAGATTGGGGGATGACCGTTTCTTTGTTTTTCTCTCCGGTCCAACCCGCAAAACCCAATACGAGTAGTGACTCCTTTTTCAACATTTTTCACTTCATTCCGCCATTCACTTTTTCTTTTGTTAGCTCCTCTTTCATCTGCTTTACTTTTTTTTCTCTTCTAGACTCTGTAGTTCTGTTTTTTCTTCTTCTCTTGATGGTCTTTCAGTAATTGATTTCCCCCGGTCATCGGCTGTTCCACCTTCCTCGTTTCAATCTTTCTCCCATGTATATAGTTTTGTTTTGTTTCACAAAAATTTTAAAATTACTAAAAATAATAAAGATTTATAAAACAGTACATTCTATACACATCAAAGTATAAATTAATAGAAAGAGGGCTCATAACAGGACGATTCGGTTTTACTATCTGAAAATTAAAGRATTTGAGAAAAAGAGATTTAAAGAATTTAAAGTTTAGACCTTGTTTCATTGATAGACTTCGAGAGCAACTCAACGACATTTTCGATCTTGGTCTTGTTGGAATTGATTCCAAATGTTCCGATTCTCCAGATTTTACCAACTGTGGCACCCAGACCACCAGCGATCTGAAAGAACCCTACGATAGTTAGAACTTCATAAAAAACAAAATACAGTTCCGCAATTCATCCATGACAAGATTTTTTTAAAAATTACCTCAACTCCATTAATAAGCATTTTTCCAGCAACATCCTTCCAGTCAATTCTTTCTGGAACCTTGACTGTTGTCAAACATGGCAATCTCAACTTCTCATCCTCCACAAATGGCTCCAAGCCGTGATTCTTCAACGCAGCATACAATACTTGAGCATTATCCTTATGTCTCTGAACTGACTCATCAATTCCTTCCTTTGCAATCGCCGAAAGTGCAGCACGAAGAGCATAGACAGTGGAGATTGGAGCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATAGAAAGAGGGCTCATAACA</pcr_primer_p1>
		<pcr_primer_p2>TTCTAACTATCGTAGGGTTCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TAATAGAAAGAGGGCTCATAACAGGACGATTCGGTTTTACTATCTGAAAATTAAAGGATTTGAGAAAAAGAGATTTAAAGAATTTAAAGTTTAGACCTTGTTTCATTGATAGACTTCGAGAGCAACTCAACGACATTTTCGATCTTGGTCTTGTTGGAATTGATTCCAAATGTTCCGATTCTCCAGATTTTACCAACTGTGGCACCCAGACCACCAGCGATCTGAAAGAACCCTACGATAGTTAGAA</canonical_amplicon>
		<polymorphic_amplicon>TAATAGAAAGAGGGCTCATAACAGGACGATTCGGTTTTACTATCTGAAAATTAAAGRATTTGAGAAAAAGAGATTTAAAGAATTTAAAGTTTAGACCTTGTTTCATTGATAGACTTCGAGAGCAACTCAACGACATTTTCGATCTTGGTCTTGTTGGAATTGATTCCAAATGTTCCGATTCTCCAGATTTTACCAACTGTGGCACCCAGACCACCAGCGATCTGAAAGAACCCTACGATAGTTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6973</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>518070</contig_pos>
        <strand></strand>
        <context>atgaacggtt[T/A]gggtgGGCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTTGATATCTTTTACAGGAATCGAGATTATTGAGCTCAAATGAACGGTT</left_flank>
        <right_flank>GGGTGGGCTATTACTTAAAAAACTATTACTTAAAAAGTTCGAATCGCAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAAGAACATGGGATACGATTGAATAGAAGATTGATCTGAATGGTCTTGAAGTACTATAACTAGTTCGCGTAGTTAGAAAGTGTTGTAATTCTTTCGTTGTGTGAAGTTTATTGTACAAAATGGAAAAGAGAATGATAAGCAAGCATTTCTGAACGTTCGACCTAATTTTCAAAAGTTGGAAAATTGCGACTGGTAGTAAAGAATGTTGAGAAGTTATAATTGAGAAGTAGAGGTAAAAAACTGACAGTGAGAGAAAATCCAAAGTAAATCAGAAAAAATATCATGACTCATTCCGATTAGAACTACTACCGTATTTTCTCTAATACAAGCCCCTCCAAACTGTAAACTTTGAGCTCGATTATCTCGAATTCAGTGAAAGATATAAAACAACTGTCCATTGATAAATTATTTACCATTATAGCACCAATATTTTATCAGATGACAAAATTTTGATATCTTTTACAGGAATCGAGATTATTGAGCTCAAATGAACGGTTTGGGTGGGCTATTACTTAAAAAACTATTACTTAAAAAGTTCGAATCGCAGAAACCATTGTTTAGTCTGGAAAAGTTGGGTAGATTTAAAAATGGAAAAAAAAACAGGAAAAAATGATAAAAGTTAACTAAAAAGGTTACCTGTTGAGATTGAACAAGATATGCTCCAATTAAAAGAATAAATAAAATATAGTTCGTCTTCATATTATGATGATATCGTTGAAAAATGTTCGTCTACCTTCTCCACCGGTACACTGATGTCTGTATACGGTCGGTGTTGCTCCTTGTCTTTTCTTCGTTTTCGCCGCCGTCGCCACTGTCTTTTATACAAATCGCCCATGTTCCGCGCGGTAGCCATTAGGCGGCAAAAAATTGGGAGATGCTCCTCCTTCCGGAGTCTGTCGTCGGCAGAAAAAGATGCACCAGGAAGGGAATTTACAAGAAAAAGTGAGAGAGAATGGAGGCAAAAAACGGATCAACTTTTTGAACGCTTTGCCGCAAGA</canonical>
            <polymorphic>TAAAAGAACATGGGATACGATTGAATAGAAGATTGATCTGAATGGTCTTGAAGTACTATAACTAGTTCGCGTAGTTAGAAAGTGTTGTAATTCTTTCGTTGTGTGAAGTTTATTGTACAAAATGGAAAAGAGAATGATAAGCAAGCATTTCTGAACGTTCGACCTAATTTTCAAAAGTTGGAAAATTGCGACTGGTAGTAAAGAATGTTGAGAAGTTATAATTGAGAAGTAGAGGTAAAAAACTGACAGTGAGAGAAAATCCAAAGTAAATCAGAAAAAATATCATGACTCATTCCGATTAGAACTACTACCGTATTTTCTCTAATACAAGCCCCTCCAAACTGTAAACTTTGAGCTCGATTATCTCGAATTCAGTGAAAGATATAAAACAACTGTCCATTGATAAATTATTTACCATTATAGCACCAATATTTTATCAGATGACAAAATTTTGATATCTTTTACAGGAATCGAGATTATTGAGCTCAAATGAACGGTTWGGGTGGGCTATTACTTAAAAAACTATTACTTAAAAAGTTCGAATCGCAGAAACCATTGTTTAGTCTGGAAAAGTTGGGTAGATTTAAAAATGGAAAAAAAAACAGGAAAAAATGATAAAAGTTAACTAAAAAGGTTACCTGTTGAGATTGAACAAGATATGCTCCAATTAAAAGAATAAATAAAATATAGTTCGTCTTCATATTATGATGATATCGTTGAAAAATGTTCGTCTACCTTCTCCACCGGTACACTGATGTCTGTATACGGTCGGTGTTGCTCCTTGTCTTTTCTTCGTTTTCGCCGCCGTCGCCACTGTCTTTTATACAAATCGCCCATGTTCCGCGCGGTAGCCATTAGGCGGCAAAAAATTGGGAGATGCTCCTCCTTCCGGAGTCTGTCGTCGGCAGAAAAAGATGCACCAGGAAGGGAATTTACAAGAAAAAGTGAGAGAGAATGGAGGCAAAAAACGGATCAACTTTTTGAACGCTTTGCCGCAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACTCATTCCGATTAGAACTAC</pcr_primer_p1>
		<pcr_primer_p2>CAACTTTTCCAGACTAAACAATG</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>TGACTCATTCCGATTAGAACTACTACCGTATTTTCTCTAATACAAGCCCCTCCAAACTGTAAACTTTGAGCTCGATTATCTCGAATTCAGTGAAAGATATAAAACAACTGTCCATTGATAAATTATTTACCATTATAGCACCAATATTTTATCAGATGACAAAATTTTGATATCTTTTACAGGAATCGAGATTATTGAGCTCAAATGAACGGTTTGGGTGGGCTATTACTTAAAAAACTATTACTTAAAAAGTTCGAATCGCAGAAACCATTGTTTAGTCTGGAAAAGTTG</canonical_amplicon>
		<polymorphic_amplicon>TGACTCATTCCGATTAGAACTACTACCGTATTTTCTCTAATACAAGCCCCTCCAAACTGTAAACTTTGAGCTCGATTATCTCGAATTCAGTGAAAGATATAAAACAACTGTCCATTGATAAATTATTTACCATTATAGCACCAATATTTTATCAGATGACAAAATTTTGATATCTTTTACAGGAATCGAGATTATTGAGCTCAAATGAACGGTTWGGGTGGGCTATTACTTAAAAAACTATTACTTAAAAAGTTCGAATCGCAGAAACCATTGTTTAGTCTGGAAAAGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6974</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>518155</contig_pos>
        <strand></strand>
        <context>TGGGTAGATT[T/C]AAAAATGGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAGTTCGAATCGCAGAAACCATTGTTTAGTCTGGAAAAGTTGGGTAGATT</left_flank>
        <right_flank>AAAAATGGAAAAAAAAACAGGAAAAAATGATAAAAGTTAACTAAAAAGGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTAATTCTTTCGTTGTGTGAAGTTTATTGTACAAAATGGAAAAGAGAATGATAAGCAAGCATTTCTGAACGTTCGACCTAATTTTCAAAAGTTGGAAAATTGCGACTGGTAGTAAAGAATGTTGAGAAGTTATAATTGAGAAGTAGAGGTAAAAAACTGACAGTGAGAGAAAATCCAAAGTAAATCAGAAAAAATATCATGACTCATTCCGATTAGAACTACTACCGTATTTTCTCTAATACAAGCCCCTCCAAACTGTAAACTTTGAGCTCGATTATCTCGAATTCAGTGAAAGATATAAAACAACTGTCCATTGATAAATTATTTACCATTATAGCACCAATATTTTATCAGATGACAAAATTTTGATATCTTTTACAGGAATCGAGATTATTGAGCTCAAATGAACGGTTTGGGTGGGCTATTACTTAAAAAACTATTACTTAAAAAGTTCGAATCGCAGAAACCATTGTTTAGTCTGGAAAAGTTGGGTAGATTTAAAAATGGAAAAAAAAACAGGAAAAAATGATAAAAGTTAACTAAAAAGGTTACCTGTTGAGATTGAACAAGATATGCTCCAATTAAAAGAATAAATAAAATATAGTTCGTCTTCATATTATGATGATATCGTTGAAAAATGTTCGTCTACCTTCTCCACCGGTACACTGATGTCTGTATACGGTCGGTGTTGCTCCTTGTCTTTTCTTCGTTTTCGCCGCCGTCGCCACTGTCTTTTATACAAATCGCCCATGTTCCGCGCGGTAGCCATTAGGCGGCAAAAAATTGGGAGATGCTCCTCCTTCCGGAGTCTGTCGTCGGCAGAAAAAGATGCACCAGGAAGGGAATTTACAAGAAAAAGTGAGAGAGAATGGAGGCAAAAAACGGATCAACTTTTTGAACGCTTTGCCGCAAGAAAGAGATGACGGTGTTTCAGGTCTCACGAATGCTTGACTCGATTTATAAAAAAGTGTCGAAAGTCGCAGCTCTCCGTGTAGTATG</canonical>
            <polymorphic>TGTAATTCTTTCGTTGTGTGAAGTTTATTGTACAAAATGGAAAAGAGAATGATAAGCAAGCATTTCTGAACGTTCGACCTAATTTTCAAAAGTTGGAAAATTGCGACTGGTAGTAAAGAATGTTGAGAAGTTATAATTGAGAAGTAGAGGTAAAAAACTGACAGTGAGAGAAAATCCAAAGTAAATCAGAAAAAATATCATGACTCATTCCGATTAGAACTACTACCGTATTTTCTCTAATACAAGCCCCTCCAAACTGTAAACTTTGAGCTCGATTATCTCGAATTCAGTGAAAGATATAAAACAACTGTCCATTGATAAATTATTTACCATTATAGCACCAATATTTTATCAGATGACAAAATTTTGATATCTTTTACAGGAATCGAGATTATTGAGCTCAAATGAACGGTTTGGGTGGGCTATTACTTAAAAAACTATTACTTAAAAAGTTCGAATCGCAGAAACCATTGTTTAGTCTGGAAAAGTTGGGTAGATTYAAAAATGGAAAAAAAAACAGGAAAAAATGATAAAAGTTAACTAAAAAGGTTACCTGTTGAGATTGAACAAGATATGCTCCAATTAAAAGAATAAATAAAATATAGTTCGTCTTCATATTATGATGATATCGTTGAAAAATGTTCGTCTACCTTCTCCACCGGTACACTGATGTCTGTATACGGTCGGTGTTGCTCCTTGTCTTTTCTTCGTTTTCGCCGCCGTCGCCACTGTCTTTTATACAAATCGCCCATGTTCCGCGCGGTAGCCATTAGGCGGCAAAAAATTGGGAGATGCTCCTCCTTCCGGAGTCTGTCGTCGGCAGAAAAAGATGCACCAGGAAGGGAATTTACAAGAAAAAGTGAGAGAGAATGGAGGCAAAAAACGGATCAACTTTTTGAACGCTTTGCCGCAAGAAAGAGATGACGGTGTTTCAGGTCTCACGAATGCTTGACTCGATTTATAAAAAAGTGTCGAAAGTCGCAGCTCTCCGTGTAGTATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>430 417 54 46 38 15</canonical_bands>
                <polymorphic_bands>430 417 92 46 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGACTCATTCCGATTAGAACTAC</pcr_primer_p1>
		<pcr_primer_p2>ACAGGTAACCTTTTTAGTTAACTTTT</pcr_primer_p2>
		<pcr_amplicon_size>357</pcr_amplicon_size>
		<canonical_amplicon>TGACTCATTCCGATTAGAACTACTACCGTATTTTCTCTAATACAAGCCCCTCCAAACTGTAAACTTTGAGCTCGATTATCTCGAATTCAGTGAAAGATATAAAACAACTGTCCATTGATAAATTATTTACCATTATAGCACCAATATTTTATCAGATGACAAAATTTTGATATCTTTTACAGGAATCGAGATTATTGAGCTCAAATGAACGGTTTGGGTGGGCTATTACTTAAAAAACTATTACTTAAAAAGTTCGAATCGCAGAAACCATTGTTTAGTCTGGAAAAGTTGGGTAGATTTAAAAATGGAAAAAAAAACAGGAAAAAATGATAAAAGTTAACTAAAAAGGTTACCTGT</canonical_amplicon>
		<polymorphic_amplicon>TGACTCATTCCGATTAGAACTACTACCGTATTTTCTCTAATACAAGCCCCTCCAAACTGTAAACTTTGAGCTCGATTATCTCGAATTCAGTGAAAGATATAAAACAACTGTCCATTGATAAATTATTTACCATTATAGCACCAATATTTTATCAGATGACAAAATTTTGATATCTTTTACAGGAATCGAGATTATTGAGCTCAAATGAACGGTTTGGGTGGGCTATTACTTAAAAAACTATTACTTAAAAAGTTCGAATCGCAGAAACCATTGTTTAGTCTGGAAAAGTTGGGTAGATTYAAAAATGGAAAAAAAAACAGGAAAAAATGATAAAAGTTAACTAAAAAGGTTACCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6975</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>521760</contig_pos>
        <strand></strand>
        <context>TTTAGGTTAG[C/T]CTAGAATTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGGAAAGAATTTGAATTAGGGTCCAGAAAAAAAACAACATTTAGGTTAG</left_flank>
        <right_flank>CTAGAATTATCAGTCATTTGTTGAAATTCGTTCCAGCTCCTGCCTGAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTGTACCCCAAACTTTCAAATGAGCATCAGTATCTTGAAAATAACTTTTCTCAAATTCATTCATTTCCGAAACCCTATCCAGTTCCCCAAACTCATTTCCATTCGATTCTCTTGTCACTTTGTACCCACATAATAATAACTATAATAACCCTTTTCCGACTCCACTAAAACAATTCGAGAGTGACGTTATTCCCCTAAACAGCTGAAAACACATTCTTTCCGTCAAATGTGGAAAACCAGAAGTGCAACTTCTGATATATTCAGAGAATCGAAACTTTTTAAAAGGCAAGCATGAACATGTGAAAAGCCATGAACAGCGTAAAAAAGAGAGTGCGTTTGCACCAGTCATATAAATCTGTTCTGTCAACTATTTTTTTCTTCCGTTGAACTTGTTCCTATGGGGGGGGGGGAACTATAGTTTCTCCAAGAACGCTTTGGAGAAGAGATTCAGGAAAGAATTTGAATTAGGGTCCAGAAAAAAAACAACATTTAGGTTAGCCTAGAATTATCAGTCATTTGTTGAAATTCGTTCCAGCTCCTGCCTGAATTTATTTTAAGAACGCGACATCACGAAAATGCCTAAAATAAGTGGCGCCTGAAATTTTCGGTCTGGTACGTAAATTCTGAAATTCGTTAAACTTTCATCTTTTGAAAAAGGGAAGTTCTTTTATCCTGTGCAAATATTTAGGTTGAAAAAAGAAAAAGAGGATTTCGGATGTAGTTTATTCTGTCCTTTTCACCCGAAACAATTTATCCGGATTGACCGCCAGTGTTCCTCAATTTGAGCCGTCTATGTGTGTTTTGCTTTTTATCCTAAATATTAAAAGTGTCTGTGTGAAAATCTTTCTAGACTGTTCTTTTGTAATCCGATACCGTAATCTGACACTTTTCGATTTGTTTCTGTTTCAACAAGGTTTGACCATAACCCGGGCGGCACCAGTTTCCGGTTGCTTTTTTGATTTTTCAGCACACGCATTTTTGTTTTGATTCCATTCAACG</canonical>
            <polymorphic>ACTGTACCCCAAACTTTCAAATGAGCATCAGTATCTTGAAAATAACTTTTCTCAAATTCATTCATTTCCGAAACCCTATCCAGTTCCCCAAACTCATTTCCATTCGATTCTCTTGTCACTTTGTACCCACATAATAATAACTATAATAACCCTTTTCCGACTCCACTAAAACAATTCGAGAGTGACGTTATTCCCCTAAACAGCTGAAAACACATTCTTTCCGTCAAATGTGGAAAACCAGAAGTGCAACTTCTGATATATTCAGAGAATCGAAACTTTTTAAAAGGCAAGCATGAACATGTGAAAAGCCATGAACAGCGTAAAAAAGAGAGTGCGTTTGCACCAGTCATATAAATCTGTTCTGTCAACTATTTTTTTCTTCCGTTGAACTTGTTCCTATGGGGGGGGGGGAACTATAGTTTCTCCAAGAACGCTTTGGAGAAGAGATTCAGGAAAGAATTTGAATTAGGGTCCAGAAAAAAAACAACATTTAGGTTAGYCTAGAATTATCAGTCATTTGTTGAAATTCGTTCCAGCTCCTGCCTGAATTTATTTTAAGAACGCGACATCACGAAAATGCCTAAAATAAGTGGCGCCTGAAATTTTCGGTCTGGTACGTAAATTCTGAAATTCGTTAAACTTTCATCTTTTGAAAAAGGGAAGTTCTTTTATCCTGTGCAAATATTTAGGTTGAAAAAAGAAAAAGAGGATTTCGGATGTAGTTTATTCTGTCCTTTTCACCCGAAACAATTTATCCGGATTGACCGCCAGTGTTCCTCAATTTGAGCCGTCTATGTGTGTTTTGCTTTTTATCCTAAATATTAAAAGTGTCTGTGTGAAAATCTTTCTAGACTGTTCTTTTGTAATCCGATACCGTAATCTGACACTTTTCGATTTGTTTCTGTTTCAACAAGGTTTGACCATAACCCGGGCGGCACCAGTTTCCGGTTGCTTTTTTGATTTTTCAGCACACGCATTTTTGTTTTGATTCCATTCAACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>251 213 203 191 105 37</canonical_bands>
                <polymorphic_bands>251 228 213 203 105</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCACCAGTCATATAAATCTGTTC</pcr_primer_p1>
		<pcr_primer_p2>TTATTTTAGGCATTTTCGTGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCACCAGTCATATAAATCTGTTCTGTCAACTATTTTTTTCTTCCGTTGAACTTGTTCCTATGGGGGGGGGGGAACTATAGTTTCTCCAAGAACGCTTTGGAGAAGAGATTCAGGAAAGAATTTGAATTAGGGTCCAGAAAAAAAACAACATTTAGGTTAGCCTAGAATTATCAGTCATTTGTTGAAATTCGTTCCAGCTCCTGCCTGAATTTATTTTAAGAACGCGACATCACGAAAATGCCTAAAATAA</canonical_amplicon>
		<polymorphic_amplicon>GCACCAGTCATATAAATCTGTTCTGTCAACTATTTTTTTCTTCCGTTGAACTTGTTCCTATGGGGGGGGGGGAACTATAGTTTCTCCAAGAACGCTTTGGAGAAGAGATTCAGGAAAGAATTTGAATTAGGGTCCAGAAAAAAAACAACATTTAGGTTAGYCTAGAATTATCAGTCATTTGTTGAAATTCGTTCCAGCTCCTGCCTGAATTTATTTTAAGAACGCGACATCACGAAAATGCCTAAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6976</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>521713</contig_pos>
        <strand>+</strand>
        <context>AGAGATTCAG[A/G]AAAGAATTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGGGGGGGAACTATAGTTTCTCCAAGAACGCTTTGGAGAAGAGATTCAG</left_flank>
        <right_flank>AAAGAATTTGAATTAGGGTCCAGAAAAAAAACAACATTTAGGTTAGCCTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAAATTTAACTGAAAAATACGTTTTTTGTATATCTTATTGACCGGTACTGTACCCCAAACTTTCAAATGAGCATCAGTATCTTGAAAATAACTTTTCTCAAATTCATTCATTTCCGAAACCCTATCCAGTTCCCCAAACTCATTTCCATTCGATTCTCTTGTCACTTTGTACCCACATAATAATAACTATAATAACCCTTTTCCGACTCCACTAAAACAATTCGAGAGTGACGTTATTCCCCTAAACAGCTGAAAACACATTCTTTCCGTCAAATGTGGAAAACCAGAAGTGCAACTTCTGATATATTCAGAGAATCGAAACTTTTTAAAAGGCAAGCATGAACATGTGAAAAGCCATGAACAGCGTAAAAAAGAGAGTGCGTTTGCACCAGTCATATAAATCTGTTCTGTCAACTATTTTTTTCTTCCGTTGAACTTGTTCCTATGGGGGGGGGGGAACTATAGTTTCTCCAAGAACGCTTTGGAGAAGAGATTCAGGAAAGAATTTGAATTAGGGTCCAGAAAAAAAACAACATTTAGGTTAGCCTAGAATTATCAGTCATTTGTTGAAATTCGTTCCAGCTCCTGCCTGAATTTATTTTAAGAACGCGACATCACGAAAATGCCTAAAATAAGTGGCGCCTGAAATTTTCGGTCTGGTACGTAAATTCTGAAATTCGTTAAACTTTCATCTTTTGAAAAAGGGAAGTTCTTTTATCCTGTGCAAATATTTAGGTTGAAAAAAGAAAAAGAGGATTTCGGATGTAGTTTATTCTGTCCTTTTCACCCGAAACAATTTATCCGGATTGACCGCCAGTGTTCCTCAATTTGAGCCGTCTATGTGTGTTTTGCTTTTTATCCTAAATATTAAAAGTGTCTGTGTGAAAATCTTTCTAGACTGTTCTTTTGTAATCCGATACCGTAATCTGACACTTTTCGATTTGTTTCTGTTTCAACAAGGTTTGACCATAACCCGGGCGGCACCAGTTTCCGGTTGCT</canonical>
            <polymorphic>CGAAATTTAACTGAAAAATACGTTTTTTGTATATCTTATTGACCGGTACTGTACCCCAAACTTTCAAATGAGCATCAGTATCTTGAAAATAACTTTTCTCAAATTCATTCATTTCCGAAACCCTATCCAGTTCCCCAAACTCATTTCCATTCGATTCTCTTGTCACTTTGTACCCACATAATAATAACTATAATAACCCTTTTCCGACTCCACTAAAACAATTCGAGAGTGACGTTATTCCCCTAAACAGCTGAAAACACATTCTTTCCGTCAAATGTGGAAAACCAGAAGTGCAACTTCTGATATATTCAGAGAATCGAAACTTTTTAAAAGGCAAGCATGAACATGTGAAAAGCCATGAACAGCGTAAAAAAGAGAGTGCGTTTGCACCAGTCATATAAATCTGTTCTGTCAACTATTTTTTTCTTCCGTTGAACTTGTTCCTATGGGGGGGGGGGAACTATAGTTTCTCCAAGAACGCTTTGGAGAAGAGATTCAGRAAAGAATTTGAATTAGGGTCCAGAAAAAAAACAACATTTAGGTTAGCCTAGAATTATCAGTCATTTGTTGAAATTCGTTCCAGCTCCTGCCTGAATTTATTTTAAGAACGCGACATCACGAAAATGCCTAAAATAAGTGGCGCCTGAAATTTTCGGTCTGGTACGTAAATTCTGAAATTCGTTAAACTTTCATCTTTTGAAAAAGGGAAGTTCTTTTATCCTGTGCAAATATTTAGGTTGAAAAAAGAAAAAGAGGATTTCGGATGTAGTTTATTCTGTCCTTTTCACCCGAAACAATTTATCCGGATTGACCGCCAGTGTTCCTCAATTTGAGCCGTCTATGTGTGTTTTGCTTTTTATCCTAAATATTAAAAGTGTCTGTGTGAAAATCTTTCTAGACTGTTCTTTTGTAATCCGATACCGTAATCTGACACTTTTCGATTTGTTTCTGTTTCAACAAGGTTTGACCATAACCCGGGCGGCACCAGTTTCCGGTTGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>273 186 142 105 97 92 82 23</canonical_bands>
                <polymorphic_bands>296 186 142 105 97 92 82</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCACCAGTCATATAAATCTGTTC</pcr_primer_p1>
		<pcr_primer_p2>TTATTTTAGGCATTTTCGTGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCACCAGTCATATAAATCTGTTCTGTCAACTATTTTTTTCTTCCGTTGAACTTGTTCCTATGGGGGGGGGGGAACTATAGTTTCTCCAAGAACGCTTTGGAGAAGAGATTCAGGAAAGAATTTGAATTAGGGTCCAGAAAAAAAACAACATTTAGGTTAGCCTAGAATTATCAGTCATTTGTTGAAATTCGTTCCAGCTCCTGCCTGAATTTATTTTAAGAACGCGACATCACGAAAATGCCTAAAATAA</canonical_amplicon>
		<polymorphic_amplicon>GCACCAGTCATATAAATCTGTTCTGTCAACTATTTTTTTCTTCCGTTGAACTTGTTCCTATGGGGGGGGGGGAACTATAGTTTCTCCAAGAACGCTTTGGAGAAGAGATTCAGRAAAGAATTTGAATTAGGGTCCAGAAAAAAAACAACATTTAGGTTAGCCTAGAATTATCAGTCATTTGTTGAAATTCGTTCCAGCTCCTGCCTGAATTTATTTTAAGAACGCGACATCACGAAAATGCCTAAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6977</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>521554</contig_pos>
        <strand>+</strand>
        <context>AAGGCAAGCA[G/T]GAACATGTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGCAACTTCTGATATATTCAGAGAATCGAAACTTTTTAAAAGGCAAGCA</left_flank>
        <right_flank>GAACATGTGAAAAGCCATGAACAGCGTAAAAAAGAGAGTGCGTTTGCACC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAGTGTTTTTCAGAAGTCGTCAAATAGCTGAAAAACCAGAAATTTCAGTAAAATTCGGTGAATCAATCTTTTCAATCTAGGTCTGTTTTACACCATCCGAAATTTTCAAAGTGATCAGAAACATGACGATCCAGACTCCTAAGAATGATCAAAATGATCGAAATTTAACTGAAAAATACGTTTTTTGTATATCTTATTGACCGGTACTGTACCCCAAACTTTCAAATGAGCATCAGTATCTTGAAAATAACTTTTCTCAAATTCATTCATTTCCGAAACCCTATCCAGTTCCCCAAACTCATTTCCATTCGATTCTCTTGTCACTTTGTACCCACATAATAATAACTATAATAACCCTTTTCCGACTCCACTAAAACAATTCGAGAGTGACGTTATTCCCCTAAACAGCTGAAAACACATTCTTTCCGTCAAATGTGGAAAACCAGAAGTGCAACTTCTGATATATTCAGAGAATCGAAACTTTTTAAAAGGCAAGCATGAACATGTGAAAAGCCATGAACAGCGTAAAAAAGAGAGTGCGTTTGCACCAGTCATATAAATCTGTTCTGTCAACTATTTTTTTCTTCCGTTGAACTTGTTCCTATGGGGGGGGGGGAACTATAGTTTCTCCAAGAACGCTTTGGAGAAGAGATTCAGGAAAGAATTTGAATTAGGGTCCAGAAAAAAAACAACATTTAGGTTAGCCTAGAATTATCAGTCATTTGTTGAAATTCGTTCCAGCTCCTGCCTGAATTTATTTTAAGAACGCGACATCACGAAAATGCCTAAAATAAGTGGCGCCTGAAATTTTCGGTCTGGTACGTAAATTCTGAAATTCGTTAAACTTTCATCTTTTGAAAAAGGGAAGTTCTTTTATCCTGTGCAAATATTTAGGTTGAAAAAAGAAAAAGAGGATTTCGGATGTAGTTTATTCTGTCCTTTTCACCCGAAACAATTTATCCGGATTGACCGCCAGTGTTCCTCAATTTGAGCCGTCTA</canonical>
            <polymorphic>CAAGTGTTTTTCAGAAGTCGTCAAATAGCTGAAAAACCAGAAATTTCAGTAAAATTCGGTGAATCAATCTTTTCAATCTAGGTCTGTTTTACACCATCCGAAATTTTCAAAGTGATCAGAAACATGACGATCCAGACTCCTAAGAATGATCAAAATGATCGAAATTTAACTGAAAAATACGTTTTTTGTATATCTTATTGACCGGTACTGTACCCCAAACTTTCAAATGAGCATCAGTATCTTGAAAATAACTTTTCTCAAATTCATTCATTTCCGAAACCCTATCCAGTTCCCCAAACTCATTTCCATTCGATTCTCTTGTCACTTTGTACCCACATAATAATAACTATAATAACCCTTTTCCGACTCCACTAAAACAATTCGAGAGTGACGTTATTCCCCTAAACAGCTGAAAACACATTCTTTCCGTCAAATGTGGAAAACCAGAAGTGCAACTTCTGATATATTCAGAGAATCGAAACTTTTTAAAAGGCAAGCAKGAACATGTGAAAAGCCATGAACAGCGTAAAAAAGAGAGTGCGTTTGCACCAGTCATATAAATCTGTTCTGTCAACTATTTTTTTCTTCCGTTGAACTTGTTCCTATGGGGGGGGGGGAACTATAGTTTCTCCAAGAACGCTTTGGAGAAGAGATTCAGGAAAGAATTTGAATTAGGGTCCAGAAAAAAAACAACATTTAGGTTAGCCTAGAATTATCAGTCATTTGTTGAAATTCGTTCCAGCTCCTGCCTGAATTTATTTTAAGAACGCGACATCACGAAAATGCCTAAAATAAGTGGCGCCTGAAATTTTCGGTCTGGTACGTAAATTCTGAAATTCGTTAAACTTTCATCTTTTGAAAAAGGGAAGTTCTTTTATCCTGTGCAAATATTTAGGTTGAAAAAAGAAAAAGAGGATTTCGGATGTAGTTTATTCTGTCCTTTTCACCCGAAACAATTTATCCGGATTGACCGCCAGTGTTCCTCAATTTGAGCCGTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>484 375 123 12 6</canonical_bands>
                <polymorphic_bands>484 381 123 12</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>502 278 220</canonical_bands>
                <polymorphic_bands>780 220</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTCACTTTGTACCCACATAATA</pcr_primer_p1>
		<pcr_primer_p2>GACAGAACAGATTTATATGACTGG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TGTCACTTTGTACCCACATAATAATAACTATAATAACCCTTTTCCGACTCCACTAAAACAATTCGAGAGTGACGTTATTCCCCTAAACAGCTGAAAACACATTCTTTCCGTCAAATGTGGAAAACCAGAAGTGCAACTTCTGATATATTCAGAGAATCGAAACTTTTTAAAAGGCAAGCATGAACATGTGAAAAGCCATGAACAGCGTAAAAAAGAGAGTGCGTTTGCACCAGTCATATAAATCTGTTCTGTC</canonical_amplicon>
		<polymorphic_amplicon>TGTCACTTTGTACCCACATAATAATAACTATAATAACCCTTTTCCGACTCCACTAAAACAATTCGAGAGTGACGTTATTCCCCTAAACAGCTGAAAACACATTCTTTCCGTCAAATGTGGAAAACCAGAAGTGCAACTTCTGATATATTCAGAGAATCGAAACTTTTTAAAAGGCAAGCAKGAACATGTGAAAAGCCATGAACAGCGTAAAAAAGAGAGTGCGTTTGCACCAGTCATATAAATCTGTTCTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6978</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>521542</contig_pos>
        <strand>+</strand>
        <context>GAAACTTTTT[A/T]AAAGGCAAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAAAACCAGAAGTGCAACTTCTGATATATTCAGAGAATCGAAACTTTTT</left_flank>
        <right_flank>AAAGGCAAGCATGAACATGTGAAAAGCCATGAACAGCGTAAAAAAGAGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACGTGAAAAAACAAGTGTTTTTCAGAAGTCGTCAAATAGCTGAAAAACCAGAAATTTCAGTAAAATTCGGTGAATCAATCTTTTCAATCTAGGTCTGTTTTACACCATCCGAAATTTTCAAAGTGATCAGAAACATGACGATCCAGACTCCTAAGAATGATCAAAATGATCGAAATTTAACTGAAAAATACGTTTTTTGTATATCTTATTGACCGGTACTGTACCCCAAACTTTCAAATGAGCATCAGTATCTTGAAAATAACTTTTCTCAAATTCATTCATTTCCGAAACCCTATCCAGTTCCCCAAACTCATTTCCATTCGATTCTCTTGTCACTTTGTACCCACATAATAATAACTATAATAACCCTTTTCCGACTCCACTAAAACAATTCGAGAGTGACGTTATTCCCCTAAACAGCTGAAAACACATTCTTTCCGTCAAATGTGGAAAACCAGAAGTGCAACTTCTGATATATTCAGAGAATCGAAACTTTTTAAAAGGCAAGCATGAACATGTGAAAAGCCATGAACAGCGTAAAAAAGAGAGTGCGTTTGCACCAGTCATATAAATCTGTTCTGTCAACTATTTTTTTCTTCCGTTGAACTTGTTCCTATGGGGGGGGGGGAACTATAGTTTCTCCAAGAACGCTTTGGAGAAGAGATTCAGGAAAGAATTTGAATTAGGGTCCAGAAAAAAAACAACATTTAGGTTAGCCTAGAATTATCAGTCATTTGTTGAAATTCGTTCCAGCTCCTGCCTGAATTTATTTTAAGAACGCGACATCACGAAAATGCCTAAAATAAGTGGCGCCTGAAATTTTCGGTCTGGTACGTAAATTCTGAAATTCGTTAAACTTTCATCTTTTGAAAAAGGGAAGTTCTTTTATCCTGTGCAAATATTTAGGTTGAAAAAAGAAAAAGAGGATTTCGGATGTAGTTTATTCTGTCCTTTTCACCCGAAACAATTTATCCGGATTGACCGCCAGTGTTCCTCAAT</canonical>
            <polymorphic>AACGTGAAAAAACAAGTGTTTTTCAGAAGTCGTCAAATAGCTGAAAAACCAGAAATTTCAGTAAAATTCGGTGAATCAATCTTTTCAATCTAGGTCTGTTTTACACCATCCGAAATTTTCAAAGTGATCAGAAACATGACGATCCAGACTCCTAAGAATGATCAAAATGATCGAAATTTAACTGAAAAATACGTTTTTTGTATATCTTATTGACCGGTACTGTACCCCAAACTTTCAAATGAGCATCAGTATCTTGAAAATAACTTTTCTCAAATTCATTCATTTCCGAAACCCTATCCAGTTCCCCAAACTCATTTCCATTCGATTCTCTTGTCACTTTGTACCCACATAATAATAACTATAATAACCCTTTTCCGACTCCACTAAAACAATTCGAGAGTGACGTTATTCCCCTAAACAGCTGAAAACACATTCTTTCCGTCAAATGTGGAAAACCAGAAGTGCAACTTCTGATATATTCAGAGAATCGAAACTTTTTWAAAGGCAAGCATGAACATGTGAAAAGCCATGAACAGCGTAAAAAAGAGAGTGCGTTTGCACCAGTCATATAAATCTGTTCTGTCAACTATTTTTTTCTTCCGTTGAACTTGTTCCTATGGGGGGGGGGGAACTATAGTTTCTCCAAGAACGCTTTGGAGAAGAGATTCAGGAAAGAATTTGAATTAGGGTCCAGAAAAAAAACAACATTTAGGTTAGCCTAGAATTATCAGTCATTTGTTGAAATTCGTTCCAGCTCCTGCCTGAATTTATTTTAAGAACGCGACATCACGAAAATGCCTAAAATAAGTGGCGCCTGAAATTTTCGGTCTGGTACGTAAATTCTGAAATTCGTTAAACTTTCATCTTTTGAAAAAGGGAAGTTCTTTTATCCTGTGCAAATATTTAGGTTGAAAAAAGAAAAAGAGGATTTCGGATGTAGTTTATTCTGTCCTTTTCACCCGAAACAATTTATCCGGATTGACCGCCAGTGTTCCTCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>320 275 178 147 80</canonical_bands>
                <polymorphic_bands>595 178 147 80</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTCACTTTGTACCCACATAATA</pcr_primer_p1>
		<pcr_primer_p2>GACAGAACAGATTTATATGACTGG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TGTCACTTTGTACCCACATAATAATAACTATAATAACCCTTTTCCGACTCCACTAAAACAATTCGAGAGTGACGTTATTCCCCTAAACAGCTGAAAACACATTCTTTCCGTCAAATGTGGAAAACCAGAAGTGCAACTTCTGATATATTCAGAGAATCGAAACTTTTTAAAAGGCAAGCATGAACATGTGAAAAGCCATGAACAGCGTAAAAAAGAGAGTGCGTTTGCACCAGTCATATAAATCTGTTCTGTC</canonical_amplicon>
		<polymorphic_amplicon>TGTCACTTTGTACCCACATAATAATAACTATAATAACCCTTTTCCGACTCCACTAAAACAATTCGAGAGTGACGTTATTCCCCTAAACAGCTGAAAACACATTCTTTCCGTCAAATGTGGAAAACCAGAAGTGCAACTTCTGATATATTCAGAGAATCGAAACTTTTTWAAAGGCAAGCATGAACATGTGAAAAGCCATGAACAGCGTAAAAAAGAGAGTGCGTTTGCACCAGTCATATAAATCTGTTCTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6979</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>521451</contig_pos>
        <strand>+</strand>
        <context>AGTGACGTTA[C/T]TCCCCTAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTATAATAACCCTTTTCCGACTCCACTAAAACAATTCGAGAGTGACGTTA</left_flank>
        <right_flank>TCCCCTAAACAGCTGAAAACACATTCTTTCCGTCAAATGTGGAAAACCAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTCACAGAATTTTTCGAATGTTCCTAGTTTTTCATTTTTTTGCCGATTTCTGAAGGACACCACCCCTTTTTGGCCCTTTCTCTACTGATAACGTGAAAAAACAAGTGTTTTTCAGAAGTCGTCAAATAGCTGAAAAACCAGAAATTTCAGTAAAATTCGGTGAATCAATCTTTTCAATCTAGGTCTGTTTTACACCATCCGAAATTTTCAAAGTGATCAGAAACATGACGATCCAGACTCCTAAGAATGATCAAAATGATCGAAATTTAACTGAAAAATACGTTTTTTGTATATCTTATTGACCGGTACTGTACCCCAAACTTTCAAATGAGCATCAGTATCTTGAAAATAACTTTTCTCAAATTCATTCATTTCCGAAACCCTATCCAGTTCCCCAAACTCATTTCCATTCGATTCTCTTGTCACTTTGTACCCACATAATAATAACTATAATAACCCTTTTCCGACTCCACTAAAACAATTCGAGAGTGACGTTATTCCCCTAAACAGCTGAAAACACATTCTTTCCGTCAAATGTGGAAAACCAGAAGTGCAACTTCTGATATATTCAGAGAATCGAAACTTTTTAAAAGGCAAGCATGAACATGTGAAAAGCCATGAACAGCGTAAAAAAGAGAGTGCGTTTGCACCAGTCATATAAATCTGTTCTGTCAACTATTTTTTTCTTCCGTTGAACTTGTTCCTATGGGGGGGGGGGAACTATAGTTTCTCCAAGAACGCTTTGGAGAAGAGATTCAGGAAAGAATTTGAATTAGGGTCCAGAAAAAAAACAACATTTAGGTTAGCCTAGAATTATCAGTCATTTGTTGAAATTCGTTCCAGCTCCTGCCTGAATTTATTTTAAGAACGCGACATCACGAAAATGCCTAAAATAAGTGGCGCCTGAAATTTTCGGTCTGGTACGTAAATTCTGAAATTCGTTAAACTTTCATCTTTTGAAAAAGGGAAGTTCTTTTATCCTGTGCAAATATTTAGGT</canonical>
            <polymorphic>CATTCACAGAATTTTTCGAATGTTCCTAGTTTTTCATTTTTTTGCCGATTTCTGAAGGACACCACCCCTTTTTGGCCCTTTCTCTACTGATAACGTGAAAAAACAAGTGTTTTTCAGAAGTCGTCAAATAGCTGAAAAACCAGAAATTTCAGTAAAATTCGGTGAATCAATCTTTTCAATCTAGGTCTGTTTTACACCATCCGAAATTTTCAAAGTGATCAGAAACATGACGATCCAGACTCCTAAGAATGATCAAAATGATCGAAATTTAACTGAAAAATACGTTTTTTGTATATCTTATTGACCGGTACTGTACCCCAAACTTTCAAATGAGCATCAGTATCTTGAAAATAACTTTTCTCAAATTCATTCATTTCCGAAACCCTATCCAGTTCCCCAAACTCATTTCCATTCGATTCTCTTGTCACTTTGTACCCACATAATAATAACTATAATAACCCTTTTCCGACTCCACTAAAACAATTCGAGAGTGACGTTAYTCCCCTAAACAGCTGAAAACACATTCTTTCCGTCAAATGTGGAAAACCAGAAGTGCAACTTCTGATATATTCAGAGAATCGAAACTTTTTAAAAGGCAAGCATGAACATGTGAAAAGCCATGAACAGCGTAAAAAAGAGAGTGCGTTTGCACCAGTCATATAAATCTGTTCTGTCAACTATTTTTTTCTTCCGTTGAACTTGTTCCTATGGGGGGGGGGGAACTATAGTTTCTCCAAGAACGCTTTGGAGAAGAGATTCAGGAAAGAATTTGAATTAGGGTCCAGAAAAAAAACAACATTTAGGTTAGCCTAGAATTATCAGTCATTTGTTGAAATTCGTTCCAGCTCCTGCCTGAATTTATTTTAAGAACGCGACATCACGAAAATGCCTAAAATAAGTGGCGCCTGAAATTTTCGGTCTGGTACGTAAATTCTGAAATTCGTTAAACTTTCATCTTTTGAAAAAGGGAAGTTCTTTTATCCTGTGCAAATATTTAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCACTTTGTACCCACATAATA</pcr_primer_p1>
		<pcr_primer_p2>GACAGAACAGATTTATATGACTGG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TGTCACTTTGTACCCACATAATAATAACTATAATAACCCTTTTCCGACTCCACTAAAACAATTCGAGAGTGACGTTATTCCCCTAAACAGCTGAAAACACATTCTTTCCGTCAAATGTGGAAAACCAGAAGTGCAACTTCTGATATATTCAGAGAATCGAAACTTTTTAAAAGGCAAGCATGAACATGTGAAAAGCCATGAACAGCGTAAAAAAGAGAGTGCGTTTGCACCAGTCATATAAATCTGTTCTGTC</canonical_amplicon>
		<polymorphic_amplicon>TGTCACTTTGTACCCACATAATAATAACTATAATAACCCTTTTCCGACTCCACTAAAACAATTCGAGAGTGACGTTAYTCCCCTAAACAGCTGAAAACACATTCTTTCCGTCAAATGTGGAAAACCAGAAGTGCAACTTCTGATATATTCAGAGAATCGAAACTTTTTAAAAGGCAAGCATGAACATGTGAAAAGCCATGAACAGCGTAAAAAAGAGAGTGCGTTTGCACCAGTCATATAAATCTGTTCTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6980</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>536840</contig_pos>
        <strand>+</strand>
        <context>CTTCATGGTC[A/C]TAGACCATGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGCAGGACAGGTTCCGTTCCTGGATGGTCCTGGCAGAGTCTTCATGGTC</left_flank>
        <right_flank>TAGACCATGTTGCAAACGCTCTAAAAACTGATATACCTTCAGCTGGACTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCACAGTAAGAACCATCCGAATCTCATTCTGTCAGAGTTTCTCGATGGGTTTCTTTTTTCATCTCAAGTACGCTTCCTATTCATGATTGAAGTGAATGGAAGACTTGTCCTTCAGGTAACTACGCTAAGTTTCCTTTCGGAATAACAAGAGAAGAAGTTGGTGGTCCCCAATTGAATGACCATTCGTTTATCTTCAATTGAGTTTTGCGCCTGAACTGTTCTTGTTTTGCGTGGGGCAAAATGTACGGCTCCGTTCGTAGTCCCGAACTTTGGAAATCTGCCATTTCTTTGGGTAACTTCATTTGTTCCAGAGACTCCATTCATTTTAGGGATCATCTCCAATCAAATTTGGTGGGAAAAAATGAAGTTGTTTGAGCGACGACAACCTAACCATCAGCCACGTCCGATTCTCGAACTTTGAAGCCAATTGAGAAGTTGATGCAAGTGCTGCAGGACAGGTTCCGTTCCTGGATGGTCCTGGCAGAGTCTTCATGGTCATAGACCATGTTGCAAACGCTCTAAAAACTGATATACCTTCAGCTGGACTTGAGAAAGTCTTCACTTACCATCGAGCCAAGCTCGATAGGTTCCTCCCATAGGATGAGACCGTTTGTCTGAAATAAAATATATTAGGAAAATGGATAACTTCAGAAGGAGAAGAAGAAGAAGAAAATAAGGTTAACGAAGATCTCATAGTTGGAATTATACAGTATAATTTTTACTGTTTCTTATTCCAAGAGAGGGAAAAAAGATGAACAAAAAAATATTTCTTTCTAGAATCTTCCATGTAACAGAACGATCGATAGGAGAAATGAAACCTCAATACAAGCCGCGAGCGCAATGACGAGGCCGACCTTTTGTTTCTACACCGATCGATATTGGAGAGACCCAGAAGAGAAGAGAATAGTATAGTATAAACAAAATGTAAGGGTGTGTGGAAAGAGATGAGAAGCCAGACATTCGTCCCGTGCTTCGTGTGTCAGTCTCCTAGACACATA</canonical>
            <polymorphic>ACTCACAGTAAGAACCATCCGAATCTCATTCTGTCAGAGTTTCTCGATGGGTTTCTTTTTTCATCTCAAGTACGCTTCCTATTCATGATTGAAGTGAATGGAAGACTTGTCCTTCAGGTAACTACGCTAAGTTTCCTTTCGGAATAACAAGAGAAGAAGTTGGTGGTCCCCAATTGAATGACCATTCGTTTATCTTCAATTGAGTTTTGCGCCTGAACTGTTCTTGTTTTGCGTGGGGCAAAATGTACGGCTCCGTTCGTAGTCCCGAACTTTGGAAATCTGCCATTTCTTTGGGTAACTTCATTTGTTCCAGAGACTCCATTCATTTTAGGGATCATCTCCAATCAAATTTGGTGGGAAAAAATGAAGTTGTTTGAGCGACGACAACCTAACCATCAGCCACGTCCGATTCTCGAACTTTGAAGCCAATTGAGAAGTTGATGCAAGTGCTGCAGGACAGGTTCCGTTCCTGGATGGTCCTGGCAGAGTCTTCATGGTCMTAGACCATGTTGCAAACGCTCTAAAAACTGATATACCTTCAGCTGGACTTGAGAAAGTCTTCACTTACCATCGAGCCAAGCTCGATAGGTTCCTCCCATAGGATGAGACCGTTTGTCTGAAATAAAATATATTAGGAAAATGGATAACTTCAGAAGGAGAAGAAGAAGAAGAAAATAAGGTTAACGAAGATCTCATAGTTGGAATTATACAGTATAATTTTTACTGTTTCTTATTCCAAGAGAGGGAAAAAAGATGAACAAAAAAATATTTCTTTCTAGAATCTTCCATGTAACAGAACGATCGATAGGAGAAATGAAACCTCAATACAAGCCGCGAGCGCAATGACGAGGCCGACCTTTTGTTTCTACACCGATCGATATTGGAGAGACCCAGAAGAGAAGAGAATAGTATAGTATAAACAAAATGTAAGGGTGTGTGGAAAGAGATGAGAAGCCAGACATTCGTCCCGTGCTTCGTGTGTCAGTCTCCTAGACACATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTAGGGATCATCTCCAATC</pcr_primer_p1>
		<pcr_primer_p2>TGGTAAGTGAAGACTTTCTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTTTAGGGATCATCTCCAATCAAATTTGGTGGGAAAAAATGAAGTTGTTTGAGCGACGACAACCTAACCATCAGCCACGTCCGATTCTCGAACTTTGAAGCCAATTGAGAAGTTGATGCAAGTGCTGCAGGACAGGTTCCGTTCCTGGATGGTCCTGGCAGAGTCTTCATGGTCATAGACCATGTTGCAAACGCTCTAAAAACTGATATACCTTCAGCTGGACTTGAGAAAGTCTTCACTTACCA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTAGGGATCATCTCCAATCAAATTTGGTGGGAAAAAATGAAGTTGTTTGAGCGACGACAACCTAACCATCAGCCACGTCCGATTCTCGAACTTTGAAGCCAATTGAGAAGTTGATGCAAGTGCTGCAGGACAGGTTCCGTTCCTGGATGGTCCTGGCAGAGTCTTCATGGTCMTAGACCATGTTGCAAACGCTCTAAAAACTGATATACCTTCAGCTGGACTTGAGAAAGTCTTCACTTACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb6999</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>615011</contig_pos>
        <strand>+</strand>
        <context>AGGTCGAAAT[C/T]AATCGATATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTGTGCCTCCTTCAAATATATATTCATGCGATTGAGGGAAGGTCGAAAT</left_flank>
        <right_flank>AATCGATATGATGCTTGATTCTTCTTGCTTCTCCGTCCTCATTGTCTTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTCTTGTCTTCTAATTCTTTATTCTGTCTGAAAGACCACAGAGACCATACACAGTTGCCTATTGTTCAGTGGAAGAAAACAATGTTCCCATTTGTCACAGCTCTAGCCGTTCTTTGCAGTCACGTGGAGGAACTGTATTTGATAGTTTGTATCTTTTATTCCAGATTCAACTGATAAGACGATTGGCGCATCACCCCCTCCCCTTCCTCGCGCCTCCTACGAAATAGAGGCGTAGCCTGAAAAGAAAACGAAAAATGACTCCCACTCCCCATTCACCTATAAAAACCGCCCTCTCGCCACACCAGACACTCAGACCATTTTTTGGGAATACCAGTTGCTCCGCCCAGGGATGTCCCATGTATAACCTGCCCTCTTGTCTCTCTAACTTTTTCTCTTCGGGGCGCCTCCCCCTCTCCACCAGACACCGCATCATCTATCCTCTGCCTGCTGTGCCTCCTTCAAATATATATTCATGCGATTGAGGGAAGGTCGAAATTAATCGATATGATGCTTGATTCTTCTTGCTTCTCCGTCCTCATTGTCTTTCTGCATTATGTCGTTTGTTTTATCTCCTCTTTTTCGTTTCTTTCTTCTCTTTTTCCCCCCCGAACTACTCAAATGCTAAGCAGATTAAAGTCATTTGAACGGGCAATAGCAGGTACTAGAAGTACTCGATCTTCTTCTTTTTTTTTCCGTTAGCAAACTCTTTTCGATTTTTCGTTCACTTACTGTTATGTAAACATATCAATTTCTATACATCATTGACCTATAAACTTTCCAGGCTCTCGCCATCTTTTCACCCCACAGCTTTACGCTGTACCTAAACGAGAAGGATGATGTTCGAATATGAGGAAGACGAGGATCCCATGGAACAACAAAAACAAGAAGAACTACAACATCATTCGTCGGATTACTCCGGTTAGTCACTTTTTTCTTATCTCAATAAGTGTCAATTTCCCTATCGAAAATTTGTCTAGAGACAGGACAAAGTACATTA</canonical>
            <polymorphic>TTTTTCTTGTCTTCTAATTCTTTATTCTGTCTGAAAGACCACAGAGACCATACACAGTTGCCTATTGTTCAGTGGAAGAAAACAATGTTCCCATTTGTCACAGCTCTAGCCGTTCTTTGCAGTCACGTGGAGGAACTGTATTTGATAGTTTGTATCTTTTATTCCAGATTCAACTGATAAGACGATTGGCGCATCACCCCCTCCCCTTCCTCGCGCCTCCTACGAAATAGAGGCGTAGCCTGAAAAGAAAACGAAAAATGACTCCCACTCCCCATTCACCTATAAAAACCGCCCTCTCGCCACACCAGACACTCAGACCATTTTTTGGGAATACCAGTTGCTCCGCCCAGGGATGTCCCATGTATAACCTGCCCTCTTGTCTCTCTAACTTTTTCTCTTCGGGGCGCCTCCCCCTCTCCACCAGACACCGCATCATCTATCCTCTGCCTGCTGTGCCTCCTTCAAATATATATTCATGCGATTGAGGGAAGGTCGAAATYAATCGATATGATGCTTGATTCTTCTTGCTTCTCCGTCCTCATTGTCTTTCTGCATTATGTCGTTTGTTTTATCTCCTCTTTTTCGTTTCTTTCTTCTCTTTTTCCCCCCCGAACTACTCAAATGCTAAGCAGATTAAAGTCATTTGAACGGGCAATAGCAGGTACTAGAAGTACTCGATCTTCTTCTTTTTTTTTCCGTTAGCAAACTCTTTTCGATTTTTCGTTCACTTACTGTTATGTAAACATATCAATTTCTATACATCATTGACCTATAAACTTTCCAGGCTCTCGCCATCTTTTCACCCCACAGCTTTACGCTGTACCTAAACGAGAAGGATGATGTTCGAATATGAGGAAGACGAGGATCCCATGGAACAACAAAAACAAGAAGAACTACAACATCATTCGTCGGATTACTCCGGTTAGTCACTTTTTTCTTATCTCAATAAGTGTCAATTTCCCTATCGAAAATTTGTCTAGAGACAGGACAAAGTACATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>499 366 135</canonical_bands>
                <polymorphic_bands>634 366</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>481 253 205 31 15 15</canonical_bands>
                <polymorphic_bands>734 205 31 15 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTATAACCTGCCCTCTTGT</pcr_primer_p1>
		<pcr_primer_p2>GGGAAAAAGAGAAGAAAGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATGTATAACCTGCCCTCTTGTCTCTCTAACTTTTTCTCTTCGGGGCGCCTCCCCCTCTCCACCAGACACCGCATCATCTATCCTCTGCCTGCTGTGCCTCCTTCAAATATATATTCATGCGATTGAGGGAAGGTCGAAATTAATCGATATGATGCTTGATTCTTCTTGCTTCTCCGTCCTCATTGTCTTTCTGCATTATGTCGTTTGTTTTATCTCCTCTTTTTCGTTTCTTTCTTCTCTTTTTCCC</canonical_amplicon>
		<polymorphic_amplicon>ATGTATAACCTGCCCTCTTGTCTCTCTAACTTTTTCTCTTCGGGGCGCCTCCCCCTCTCCACCAGACACCGCATCATCTATCCTCTGCCTGCTGTGCCTCCTTCAAATATATATTCATGCGATTGAGGGAAGGTCGAAATYAATCGATATGATGCTTGATTCTTCTTGCTTCTCCGTCCTCATTGTCTTTCTGCATTATGTCGTTTGTTTTATCTCCTCTTTTTCGTTTCTTTCTTCTCTTTTTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7000</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>623704</contig_pos>
        <strand>+</strand>
        <context>TTTTGAACGT[C/T]GAATTTTTAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATGAAAAGGTTCAAAAATCACGACACTCGAGAAGAGCAATTTTGAACGT</left_flank>
        <right_flank>GAATTTTTACGACAGCTTTTTTTTCCATCACCTGATCTTATTACAAAACA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTATCATTATATCCTAAACTTTTTATTAGTTTACAAAATTTTGATATCTTTCACAAGAACCGAGATAATTGAGCTCAAACGTGAAAGTAGGGGCCCTCTCAAACACTATAATTGAGTGCCACCCAACCCGTCAGCTTTGAGCTTCTATAACTCATTTGCTGTGCAAGATATCAACAAGTGGTTTACTAGCAAAACATTTTTACATTATGATTAACATTTTATCAGTTGACAGGTTTCCGATATCTTTGACAGTAACTGAGATATAGTGGCTCAAAATTGACTGGTTGAGTGTCACTCTATTAGAGTGTTTCTCATTGTTTTCAATGGTCCCCTATACGTTAACTGTTTTATTTTCGAAGCTAATTTGTTTATCTTCCTTCTTATTTGTTTTATAAGGAACAATTTTAGTTTTTGCAATCGAAAATCCTGATTTCCTTCCAACCGAAAGTATGAAAAGGTTCAAAAATCACGACACTCGAGAAGAGCAATTTTGAACGTCGAATTTTTACGACAGCTTTTTTTTCCATCACCTGATCTTATTACAAAACACATTTTGAGCAAGAGTCAGAACTTTCATGACTTTGAAAATTTCTGAACTTTGCCACCTTCAAGATCCCCAGTCAACTTTCAAGACTTTCAAATTCTGTGAATTCGAAATTGATCTCTCAAAAGTTACTTTGCTTCTTGATTCTTGATATTCTGGGGATTGTACCCTCAAAACTAGTGAAAGTTTGATTTCCAATTAGTTCCAGACCTATATGAATACTAACCAAGGTTTAATCTACCCTTAAAACCTCAGAAAATCTAATAGAACGCCATTTGAACCGTCAACTTTAAGCCTTTTTATCACGCTTCCTGTAGAAGATATCAAAAAGTGGTAAATTGATAAATACTTATTATAATATCAAAAACATTCTGTCAGTTGACTATTTTTTTAATATATCTTACAGGAACCGAGATAAATTGGCTCAAAGTTAAAAACGGGTGGCCTTCTATTAG</canonical>
            <polymorphic>TTTATCATTATATCCTAAACTTTTTATTAGTTTACAAAATTTTGATATCTTTCACAAGAACCGAGATAATTGAGCTCAAACGTGAAAGTAGGGGCCCTCTCAAACACTATAATTGAGTGCCACCCAACCCGTCAGCTTTGAGCTTCTATAACTCATTTGCTGTGCAAGATATCAACAAGTGGTTTACTAGCAAAACATTTTTACATTATGATTAACATTTTATCAGTTGACAGGTTTCCGATATCTTTGACAGTAACTGAGATATAGTGGCTCAAAATTGACTGGTTGAGTGTCACTCTATTAGAGTGTTTCTCATTGTTTTCAATGGTCCCCTATACGTTAACTGTTTTATTTTCGAAGCTAATTTGTTTATCTTCCTTCTTATTTGTTTTATAAGGAACAATTTTAGTTTTTGCAATCGAAAATCCTGATTTCCTTCCAACCGAAAGTATGAAAAGGTTCAAAAATCACGACACTCGAGAAGAGCAATTTTGAACGTYGAATTTTTACGACAGCTTTTTTTTCCATCACCTGATCTTATTACAAAACACATTTTGAGCAAGAGTCAGAACTTTCATGACTTTGAAAATTTCTGAACTTTGCCACCTTCAAGATCCCCAGTCAACTTTCAAGACTTTCAAATTCTGTGAATTCGAAATTGATCTCTCAAAAGTTACTTTGCTTCTTGATTCTTGATATTCTGGGGATTGTACCCTCAAAACTAGTGAAAGTTTGATTTCCAATTAGTTCCAGACCTATATGAATACTAACCAAGGTTTAATCTACCCTTAAAACCTCAGAAAATCTAATAGAACGCCATTTGAACCGTCAACTTTAAGCCTTTTTATCACGCTTCCTGTAGAAGATATCAAAAAGTGGTAAATTGATAAATACTTATTATAATATCAAAAACATTCTGTCAGTTGACTATTTTTTTAATATATCTTACAGGAACCGAGATAAATTGGCTCAAAGTTAAAAACGGGTGGCCTTCTATTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>356 346 154 64 58 22</canonical_bands>
                <polymorphic_bands>356 346 176 64 58</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTATGAAAAGGTTCAAAAATCA</pcr_primer_p1>
		<pcr_primer_p2>ATCAAGAATCAAGAAGCAAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTATGAAAAGGTTCAAAAATCACGACACTCGAGAAGAGCAATTTTGAACGTCGAATTTTTACGACAGCTTTTTTTTCCATCACCTGATCTTATTACAAAACACATTTTGAGCAAGAGTCAGAACTTTCATGACTTTGAAAATTTCTGAACTTTGCCACCTTCAAGATCCCCAGTCAACTTTCAAGACTTTCAAATTCTGTGAATTCGAAATTGATCTCTCAAAAGTTACTTTGCTTCTTGATTCTTGAT</canonical_amplicon>
		<polymorphic_amplicon>AGTATGAAAAGGTTCAAAAATCACGACACTCGAGAAGAGCAATTTTGAACGTYGAATTTTTACGACAGCTTTTTTTTCCATCACCTGATCTTATTACAAAACACATTTTGAGCAAGAGTCAGAACTTTCATGACTTTGAAAATTTCTGAACTTTGCCACCTTCAAGATCCCCAGTCAACTTTCAAGACTTTCAAATTCTGTGAATTCGAAATTGATCTCTCAAAAGTTACTTTGCTTCTTGATTCTTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7001</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>623745</contig_pos>
        <strand></strand>
        <context>CCTGATCTTA[T/A]TACAAAACAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTGAACGTCGAATTTTTACGACAGCTTTTTTTTCCATCACCTGATCTTA</left_flank>
        <right_flank>TACAAAACACATTTTGAGCAAGAGTCAGAACTTTCATGACTTTGAAAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGATATCTTTCACAAGAACCGAGATAATTGAGCTCAAACGTGAAAGTAGGGGCCCTCTCAAACACTATAATTGAGTGCCACCCAACCCGTCAGCTTTGAGCTTCTATAACTCATTTGCTGTGCAAGATATCAACAAGTGGTTTACTAGCAAAACATTTTTACATTATGATTAACATTTTATCAGTTGACAGGTTTCCGATATCTTTGACAGTAACTGAGATATAGTGGCTCAAAATTGACTGGTTGAGTGTCACTCTATTAGAGTGTTTCTCATTGTTTTCAATGGTCCCCTATACGTTAACTGTTTTATTTTCGAAGCTAATTTGTTTATCTTCCTTCTTATTTGTTTTATAAGGAACAATTTTAGTTTTTGCAATCGAAAATCCTGATTTCCTTCCAACCGAAAGTATGAAAAGGTTCAAAAATCACGACACTCGAGAAGAGCAATTTTGAACGTCGAATTTTTACGACAGCTTTTTTTTCCATCACCTGATCTTATTACAAAACACATTTTGAGCAAGAGTCAGAACTTTCATGACTTTGAAAATTTCTGAACTTTGCCACCTTCAAGATCCCCAGTCAACTTTCAAGACTTTCAAATTCTGTGAATTCGAAATTGATCTCTCAAAAGTTACTTTGCTTCTTGATTCTTGATATTCTGGGGATTGTACCCTCAAAACTAGTGAAAGTTTGATTTCCAATTAGTTCCAGACCTATATGAATACTAACCAAGGTTTAATCTACCCTTAAAACCTCAGAAAATCTAATAGAACGCCATTTGAACCGTCAACTTTAAGCCTTTTTATCACGCTTCCTGTAGAAGATATCAAAAAGTGGTAAATTGATAAATACTTATTATAATATCAAAAACATTCTGTCAGTTGACTATTTTTTTAATATATCTTACAGGAACCGAGATAAATTGGCTCAAAGTTAAAAACGGGTGGCCTTCTATTAGAATGTTTACGGTAATCTCTATCCGTTACTTCATTATTGCGT</canonical>
            <polymorphic>TTGATATCTTTCACAAGAACCGAGATAATTGAGCTCAAACGTGAAAGTAGGGGCCCTCTCAAACACTATAATTGAGTGCCACCCAACCCGTCAGCTTTGAGCTTCTATAACTCATTTGCTGTGCAAGATATCAACAAGTGGTTTACTAGCAAAACATTTTTACATTATGATTAACATTTTATCAGTTGACAGGTTTCCGATATCTTTGACAGTAACTGAGATATAGTGGCTCAAAATTGACTGGTTGAGTGTCACTCTATTAGAGTGTTTCTCATTGTTTTCAATGGTCCCCTATACGTTAACTGTTTTATTTTCGAAGCTAATTTGTTTATCTTCCTTCTTATTTGTTTTATAAGGAACAATTTTAGTTTTTGCAATCGAAAATCCTGATTTCCTTCCAACCGAAAGTATGAAAAGGTTCAAAAATCACGACACTCGAGAAGAGCAATTTTGAACGTCGAATTTTTACGACAGCTTTTTTTTCCATCACCTGATCTTAWTACAAAACACATTTTGAGCAAGAGTCAGAACTTTCATGACTTTGAAAATTTCTGAACTTTGCCACCTTCAAGATCCCCAGTCAACTTTCAAGACTTTCAAATTCTGTGAATTCGAAATTGATCTCTCAAAAGTTACTTTGCTTCTTGATTCTTGATATTCTGGGGATTGTACCCTCAAAACTAGTGAAAGTTTGATTTCCAATTAGTTCCAGACCTATATGAATACTAACCAAGGTTTAATCTACCCTTAAAACCTCAGAAAATCTAATAGAACGCCATTTGAACCGTCAACTTTAAGCCTTTTTATCACGCTTCCTGTAGAAGATATCAAAAAGTGGTAAATTGATAAATACTTATTATAATATCAAAAACATTCTGTCAGTTGACTATTTTTTTAATATATCTTACAGGAACCGAGATAAATTGGCTCAAAGTTAAAAACGGGTGGCCTTCTATTAGAATGTTTACGGTAATCTCTATCCGTTACTTCATTATTGCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTATGAAAAGGTTCAAAAATCA</pcr_primer_p1>
		<pcr_primer_p2>ATCAAGAATCAAGAAGCAAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTATGAAAAGGTTCAAAAATCACGACACTCGAGAAGAGCAATTTTGAACGTCGAATTTTTACGACAGCTTTTTTTTCCATCACCTGATCTTATTACAAAACACATTTTGAGCAAGAGTCAGAACTTTCATGACTTTGAAAATTTCTGAACTTTGCCACCTTCAAGATCCCCAGTCAACTTTCAAGACTTTCAAATTCTGTGAATTCGAAATTGATCTCTCAAAAGTTACTTTGCTTCTTGATTCTTGAT</canonical_amplicon>
		<polymorphic_amplicon>AGTATGAAAAGGTTCAAAAATCACGACACTCGAGAAGAGCAATTTTGAACGTCGAATTTTTACGACAGCTTTTTTTTCCATCACCTGATCTTAWTACAAAACACATTTTGAGCAAGAGTCAGAACTTTCATGACTTTGAAAATTTCTGAACTTTGCCACCTTCAAGATCCCCAGTCAACTTTCAAGACTTTCAAATTCTGTGAATTCGAAATTGATCTCTCAAAAGTTACTTTGCTTCTTGATTCTTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7002</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>650835</contig_pos>
        <strand>+</strand>
        <context>AAAAAAGTGA[A/G]TGMTCTCAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGCGGCTATTTTTGTATATAGAGCTCACCAGTAAGTTTCAAAAAAGTGA</left_flank>
        <right_flank>TGATCTCAATAAACTTTGGATTTCTAGAACGCTAAACGCTTTCCAAGACT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTCTTTTTTTTCTCAGAAGTTTTGAAATTCAGATGGAAGAAGATGACACAGGCGAATGTTCTTCTTCCCAGTTAAATGATAGTTTTGGAAACAAGGAAGGACTGGAGCTTTTGCAATATGAAAGAGCAACACTTGCCAAAACCCTTCCGGCAAGTGTACTCTTTGTTGTTGCCAGTGGATTGGGACTGGAACGTCTCTTTTTGGAACATCTGATTCTCTTCTCTGATCGTCGCCTGTTGGCACTTGTGTTGAATACAAACGAACACGATGAGAGCTACTTTGTTTCCAAACTCAAAGAACATTCCGTTGATTGTGACCCAAAAGTTATCAACTCGGAAGTTTCTATTAAGGATCGTCAATCGATTTACCTTGAGGGAGGCGTTCAGTTTTGTTCGAGTCGTGTTCTTCTAGTCGATCTTCTCCAAAATCGAATACCAGTAGATCGTATTGCGGCTATTTTTGTATATAGAGCTCACCAGTAAGTTTCAAAAAAGTGAGTGATCTCAATAAACTTTGGATTTCTAGAACGCTAAACGCTTTCCAAGACTCATTCATTCTCCGATTATATCGTGAAAAAAAGCCAGATGGTATGGTAAAAGCATTCACGGATGTTCCCAATGTACTCTCCTCGCTTGGACAATTGCAACGACTTGTTGATCGTCTCTACATTCGCCATGTTGAATTGATGCCTCGATTTTCTAGCATCATTGAAACGGAACTCAATAGATATCAACTCAAAACTGCAATCTTCTCGGTAGATGTACCTACAGCACTGAGACGTGTCCATCGAACCCTCATCGAATTCATTAAAGTATGTGTTCGAGACTTGAGAACGTCTTCTCTATCTGGGAAACAAACCGATGAACCCGTTGAAGAAATGATTCATGTTCCTTGGGCAACTACACAACTTGAGAAGAGACTTCGTGATAGACGTGGAAATATATCAGAAAAACAACAACGTCTTCTGAATGATGTTGCCTCTCTTCGAGAAATTCTAC</canonical>
            <polymorphic>TGTTCTTTTTTTTCTCAGAAGTTTTGAAATTCAGATGGAAGAAGATGACACAGGCGAATGTTCTTCTTCCCAGTTAAATGATAGTTTTGGAAACAAGGAAGGACTGGAGCTTTTGCAATATGAAAGAGCAACACTTGCCAAAACCCTTCCGGCAAGTGTACTCTTTGTTGTTGCCAGTGGATTGGGACTGGAACGTCTCTTTTTGGAACATCTGATTCTCTTCTCTGATCGTCGCCTGTTGGCACTTGTGTTGAATACAAACGAACACGATGAGAGCTACTTTGTTTCCAAACTCAAAGAACATTCCGTTGATTGTGACCCAAAAGTTATCAACTCGGAAGTTTCTATTAAGGATCGTCAATCGATTTACCTTGAGGGAGGCGTTCAGTTTTGTTCGAGTCGTGTTCTTCTAGTCGATCTTCTCCAAAATCGAATACCAGTAGATCGTATTGCGGCTATTTTTGTATATAGAGCTCACCAGTAAGTTTCAAAAAAGTGARTGATCTCAATAAACTTTGGATTTCTAGAACGCTAAACGCTTTCCAAGACTCATTCATTCTCCGATTATATCGTGAAAAAAAGCCAGATGGTATGGTAAAAGCATTCACGGATGTTCCCAATGTACTCTCCTCGCTTGGACAATTGCAACGACTTGTTGATCGTCTCTACATTCGCCATGTTGAATTGATGCCTCGATTTTCTAGCATCATTGAAACGGAACTCAATAGATATCAACTCAAAACTGCAATCTTCTCGGTAGATGTACCTACAGCACTGAGACGTGTCCATCGAACCCTCATCGAATTCATTAAAGTATGTGTTCGAGACTTGAGAACGTCTTCTCTATCTGGGAAACAAACCGATGAACCCGTTGAAGAAATGATTCATGTTCCTTGGGCAACTACACAACTTGAGAAGAGACTTCGTGATAGACGTGGAAATATATCAGAAAAACAACAACGTCTTCTGAATGATGTTGCCTCTCTTCGAGAAATTCTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>167 87 86 83 73 72 65 63 50 50 36 33 25 22 21 21 17 10 9 6 4</canonical_bands>
                <polymorphic_bands>167 87 86 83 76 73 65 63 50 50 36 33 25 22 21 21 17 10 9 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGTTATCAACTCGGAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>TATAATCGGAGAATGAATGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAAGTTATCAACTCGGAAGTTTCTATTAAGGATCGTCAATCGATTTACCTTGAGGGAGGCGTTCAGTTTTGTTCGAGTCGTGTTCTTCTAGTCGATCTTCTCCAAAATCGAATACCAGTAGATCGTATTGCGGCTATTTTTGTATATAGAGCTCACCAGTAAGTTTCAAAAAAGTGAGTGATCTCAATAAACTTTGGATTTCTAGAACGCTAAACGCTTTCCAAGACTCATTCATTCTCCGATTATA</canonical_amplicon>
		<polymorphic_amplicon>AAAAGTTATCAACTCGGAAGTTTCTATTAAGGATCGTCAATCGATTTACCTTGAGGGAGGCGTTCAGTTTTGTTCGAGTCGTGTTCTTCTAGTCGATCTTCTCCAAAATCGAATACCAGTAGATCGTATTGCGGCTATTTTTGTATATAGAGCTCACCAGTAAGTTTCAAAAAAGTGARTGATCTCAATAAACTTTGGATTTCTAGAACGCTAAACGCTTTCCAAGACTCATTCATTCTCCGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7003</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>652424</contig_pos>
        <strand>+</strand>
        <context>AGGCGAGAAG[A/G]GAATCCTCGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTAGCTCTGTGAGGATAGCCAAATCGTAAATAAGTGGGGAGGCGAGAAG</left_flank>
        <right_flank>GAATCCTCGCAAGTGTTGTGCACCACAAATGTTTGCTTTCCGCCCATGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTCAGAAAACCACTGCCAGGGCGGCTCAAAAAAGAAGAAAGCACGCTGAAGAATTGAGTGGGTTTTCCAGTGATTCTCGTGTTCAAACCAATCTGATACAATTCGGAATTCTTCAATACAAGCGCAGAAAGTCTGGAAATGAGGTGAGTTACTAAAGAGCTAACACACTAGAATTCATTCAACAAGACAAAAAACATTAAGAAGGAATTTAAAAGTTATCACTTTGACTGTGGGAGCTGGGTGAAGAATTCGATCTGCATGTCGGTGTCAGATGGGAAGCCGGCCAGAGCAGTCACCAATTTGGTGAGCGTCGAGAACTGCCGCATGAAGGCATTGCTGATTGGAGTACCTGGCGGAACGACAGGGGCCTTCAGGAGAAGAGAAAGGATGGAAAGAACAGAGTGGAATGGTTTGTAGTCGTCGCCATCTTTGTAGGTCACACGAGAGGCTAGCTCTGTGAGGATAGCCAAATCGTAAATAAGTGGGGAGGCGAGAAGGGAATCCTCGCAAGTGTTGTGCACCACAAATGTTTGCTTTCCGCCCATGAAGATGCTGGAAATTCAACGTCACTTAATGAAATAAGATGCTAGAATTACCTGCAGATGTATTCATCCATAGCTCTTTTCGAATCAGCGACAAATGGAACGTACTTAATCACGACACAGTGATCTGGGTTCTTGGCATCTGGGAACAAAATCTGATTGGATTTCACCATATCATCGACAACCGAAGATTTCGAGATTTCCTTCGAACGGAATTGTCTCGCTTCACTCAAATTCTTTCCGTCATTGTTTCCGAGATGGTTGTAGGATACGATGCATTCTGGTTTCAATCCACTGCTCACAAGGAAATCAACAAAAGCAGACTTGAACTTGGTTTGTCCTGACTTGAAATCGTCTCCACCAACGAAAACGTTGTGACGATCGGCGAGCTCTATGATTCCGGGAACAAGCGTGTTCTGAGGAGAACCATTGATGTAATGCGCTCCTTCGAGAATC</canonical>
            <polymorphic>GTCTCAGAAAACCACTGCCAGGGCGGCTCAAAAAAGAAGAAAGCACGCTGAAGAATTGAGTGGGTTTTCCAGTGATTCTCGTGTTCAAACCAATCTGATACAATTCGGAATTCTTCAATACAAGCGCAGAAAGTCTGGAAATGAGGTGAGTTACTAAAGAGCTAACACACTAGAATTCATTCAACAAGACAAAAAACATTAAGAAGGAATTTAAAAGTTATCACTTTGACTGTGGGAGCTGGGTGAAGAATTCGATCTGCATGTCGGTGTCAGATGGGAAGCCGGCCAGAGCAGTCACCAATTTGGTGAGCGTCGAGAACTGCCGCATGAAGGCATTGCTGATTGGAGTACCTGGCGGAACGACAGGGGCCTTCAGGAGAAGAGAAAGGATGGAAAGAACAGAGTGGAATGGTTTGTAGTCGTCGCCATCTTTGTAGGTCACACGAGAGGCTAGCTCTGTGAGGATAGCCAAATCGTAAATAAGTGGGGAGGCGAGAAGRGAATCCTCGCAAGTGTTGTGCACCACAAATGTTTGCTTTCCGCCCATGAAGATGCTGGAAATTCAACGTCACTTAATGAAATAAGATGCTAGAATTACCTGCAGATGTATTCATCCATAGCTCTTTTCGAATCAGCGACAAATGGAACGTACTTAATCACGACACAGTGATCTGGGTTCTTGGCATCTGGGAACAAAATCTGATTGGATTTCACCATATCATCGACAACCGAAGATTTCGAGATTTCCTTCGAACGGAATTGTCTCGCTTCACTCAAATTCTTTCCGTCATTGTTTCCGAGATGGTTGTAGGATACGATGCATTCTGGTTTCAATCCACTGCTCACAAGGAAATCAACAAAAGCAGACTTGAACTTGGTTTGTCCTGACTTGAAATCGTCTCCACCAACGAAAACGTTGTGACGATCGGCGAGCTCTATGATTCCGGGAACAAGCGTGTTCTGAGGAGAACCATTGATGTAATGCGCTCCTTCGAGAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTTTGTAGGTCACACGAGAG</pcr_primer_p1>
		<pcr_primer_p2>AGATCACTGTGTCGTGATTAAGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATCTTTGTAGGTCACACGAGAGGCTAGCTCTGTGAGGATAGCCAAATCGTAAATAAGTGGGGAGGCGAGAAGGGAATCCTCGCAAGTGTTGTGCACCACAAATGTTTGCTTTCCGCCCATGAAGATGCTGGAAATTCAACGTCACTTAATGAAATAAGATGCTAGAATTACCTGCAGATGTATTCATCCATAGCTCTTTTCGAATCAGCGACAAATGGAACGTACTTAATCACGACACAGTGATCT</canonical_amplicon>
		<polymorphic_amplicon>ATCTTTGTAGGTCACACGAGAGGCTAGCTCTGTGAGGATAGCCAAATCGTAAATAAGTGGGGAGGCGAGAAGRGAATCCTCGCAAGTGTTGTGCACCACAAATGTTTGCTTTCCGCCCATGAAGATGCTGGAAATTCAACGTCACTTAATGAAATAAGATGCTAGAATTACCTGCAGATGTATTCATCCATAGCTCTTTTCGAATCAGCGACAAATGGAACGTACTTAATCACGACACAGTGATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7004</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>698642</contig_pos>
        <strand>+</strand>
        <context>GAGCATCAAA[G/T]TTAAGATTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCTAAAAATTAAAAAATTCAAGATTTTATCTTCTTTCGGGAGCATCAAA</left_flank>
        <right_flank>TTAAGATTTTTTTGATTTTCAGAATGTGTTCTATCAGAAAACGAATGTCT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGGTTCACATTCATAGCAGTTCTTATTTTACAAGGTCTCATTCGTACAAGTTCTCATTTTGTAAGAGTTCTCATTTGTGGATTTCTTATTTGTAGCATTTCTCACGGGAAAATTTCTCACCTTTTGTACCACCACAATTTGTTAACAGATAACATGTTGGTGATATTATGATAATCATTTTATCCGTAGACCACTTTTTGTTATCTGTCAGAAGAACCGAGACAATTAAGCTCAAAGTAGGGTGGACTTCCATTAGAACTAATACGGTAGTAATGTGTCTTAAAAGCTCCCGATTGAGACTTGTAATTTGGGCACATGGGAAAAATTGACTCCGCGTCACTTCGAAACCGCGACACTTTGAAACCGTAGTAATGCAGGCGAATGGATAAATTTCTGACTACAAAAACAATTTTAGGATTTTCAAATATGCTTTTTCTGATAGAACACATTCTAAAAATTAAAAAATTCAAGATTTTATCTTCTTTCGGGAGCATCAAAGTTAAGATTTTTTTGATTTTCAGAATGTGTTCTATCAGAAAACGAATGTCTGAAAATCCTAAAATTGTTTTTGTAGTCTGAAATTTACCCACTCGCCTGCATTACCGTGGTTTCGAACCGGTTTTGAAATGACTGGTTTCGAAGTGACGTGGAGCCGAAAAATTATTGTTTTTCTCTGGAAAATCTAGGTGATCGGCAATTTTAAGAATTTTTTTTTTGGTTGAACACAAATGTTTTAAATTCTCTGATAGAAGCCCACCCTACACGCTCACTGTGAGCTTAATTATCTCGGTTTTTTTTAGAAGATATCGAAAACTTGTCAACAAAAAAAATGTTTTTCGTAATATTCCCAACATTTTGACAGTTGACAAATTTTTGATATCTGTTGAAATAACCAAGATAATTGAGTTCTACGAGCATGCATAGGGCGAGCTTCTATCAGATCATTTACGGTGTGTTTAATAAAAGTAGAAACATGAAACATTACGAATTTTTGTATAT</canonical>
            <polymorphic>ACGGTTCACATTCATAGCAGTTCTTATTTTACAAGGTCTCATTCGTACAAGTTCTCATTTTGTAAGAGTTCTCATTTGTGGATTTCTTATTTGTAGCATTTCTCACGGGAAAATTTCTCACCTTTTGTACCACCACAATTTGTTAACAGATAACATGTTGGTGATATTATGATAATCATTTTATCCGTAGACCACTTTTTGTTATCTGTCAGAAGAACCGAGACAATTAAGCTCAAAGTAGGGTGGACTTCCATTAGAACTAATACGGTAGTAATGTGTCTTAAAAGCTCCCGATTGAGACTTGTAATTTGGGCACATGGGAAAAATTGACTCCGCGTCACTTCGAAACCGCGACACTTTGAAACCGTAGTAATGCAGGCGAATGGATAAATTTCTGACTACAAAAACAATTTTAGGATTTTCAAATATGCTTTTTCTGATAGAACACATTCTAAAAATTAAAAAATTCAAGATTTTATCTTCTTTCGGGAGCATCAAAKTTAAGATTTTTTTGATTTTCAGAATGTGTTCTATCAGAAAACGAATGTCTGAAAATCCTAAAATTGTTTTTGTAGTCTGAAATTTACCCACTCGCCTGCATTACCGTGGTTTCGAACCGGTTTTGAAATGACTGGTTTCGAAGTGACGTGGAGCCGAAAAATTATTGTTTTTCTCTGGAAAATCTAGGTGATCGGCAATTTTAAGAATTTTTTTTTTGGTTGAACACAAATGTTTTAAATTCTCTGATAGAAGCCCACCCTACACGCTCACTGTGAGCTTAATTATCTCGGTTTTTTTTAGAAGATATCGAAAACTTGTCAACAAAAAAAATGTTTTTCGTAATATTCCCAACATTTTGACAGTTGACAAATTTTTGATATCTGTTGAAATAACCAAGATAATTGAGTTCTACGAGCATGCATAGGGCGAGCTTCTATCAGATCATTTACGGTGTGTTTAATAAAAGTAGAAACATGAAACATTACGAATTTTTGTATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTGATAGAACACATTCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GATTTTCCAGAGAAAAACAATAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTCTGATAGAACACATTCTAAAAATTAAAAAATTCAAGATTTTATCTTCTTTCGGGAGCATCAAAGTTAAGATTTTTTTGATTTTCAGAATGTGTTCTATCAGAAAACGAATGTCTGAAAATCCTAAAATTGTTTTTGTAGTCTGAAATTTACCCACTCGCCTGCATTACCGTGGTTTCGAACCGGTTTTGAAATGACTGGTTTCGAAGTGACGTGGAGCCGAAAAATTATTGTTTTTCTCTGGAAAATC</canonical_amplicon>
		<polymorphic_amplicon>TTTCTGATAGAACACATTCTAAAAATTAAAAAATTCAAGATTTTATCTTCTTTCGGGAGCATCAAAKTTAAGATTTTTTTGATTTTCAGAATGTGTTCTATCAGAAAACGAATGTCTGAAAATCCTAAAATTGTTTTTGTAGTCTGAAATTTACCCACTCGCCTGCATTACCGTGGTTTCGAACCGGTTTTGAAATGACTGGTTTCGAAGTGACGTGGAGCCGAAAAATTATTGTTTTTCTCTGGAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7056</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>713484</contig_pos>
        <strand>+</strand>
        <context>AATAATTGGC[C/T]TACCACAGCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAAATTTATGAATGCTCTTGGCATGCATTCCGATAAGATAATAATTGGC</left_flank>
        <right_flank>TACCACAGCCATAACTATCGATTTTTTCAGAAGAATGTTCCCTAATTGTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGGTGCAACTTGATCTGATGATGATGGATGATGCCATACTGGATCGTCGAGTCGGAGACGAGCAGTCTGAAAAAATAAAGAATGATATGCTCGCACTAAACAATTTACTTGCCTGCGTTGCATAGTTTTCTAACTCTGCGTTTTCGCCAATGTTGTCAAGCCCTCCTCCGAATGTTTCATCGTTGGCGGCATCGAACTCATCGTCAAAAATGTTGTGTTCTTCATCGCTATCTGCTAGGGACTCGGGGAAATCGTCTGAAAATATGCAATGAAACAAGAACAACATGAATGAAATCTTACCGAACATTAATTCTCCTTCAATCTCCTCGAGAGTTTTACCATACTTTTTAACTTCATCCATACCCGATCGTTTGAGTTGATGATTAGATGTCCGTCAAAACCTGCAAAAAATAGGTTTAAGACGCTCCGAATTGGGTTAAACTGAGAGATAAATTTATGAATGCTCTTGGCATGCATTCCGATAAGATAATAATTGGCTTACCACAGCCATAACTATCGATTTTTTCAGAAGAATGTTCCCTAATTGTAAAAAAACGAATCATTGAAAAATTGAGCAAAAAGATCGATTTTCTGTGGAAAACGCCTGCTGTCCGCCCGTACACAGCCTCGTATTTCGCAGCAAAGAAAATGTCGTCGCGATGAGACCAGCTGGCTAATCACGAGTGTGTGCCTTTAATCAGAGACCATGAGAAAATGAGAGACCCCAGAGAGCGCAAAACGAGGCAATTCAAAAATACTTTTTCACAGCAATGTTTCCTCTATCAGAGAAACATTTACCGTAAAACCTGTATTAGAAGAGCCCCTTCAATAAAAGAATCAACGAAAAGCGTGTAACTTTTCTTTTGTAATTCATGTCATTCTTCTGTCTGAGAGCGTGCAGTATGCATAATTTTGTTATAAATGAAAGAACATATAAGTAATCTTACATTATTTATTTCAATGTATTCAATGAAAATCAGCAAAGCTCCAAAGAATATG</canonical>
            <polymorphic>CTGGTGCAACTTGATCTGATGATGATGGATGATGCCATACTGGATCGTCGAGTCGGAGACGAGCAGTCTGAAAAAATAAAGAATGATATGCTCGCACTAAACAATTTACTTGCCTGCGTTGCATAGTTTTCTAACTCTGCGTTTTCGCCAATGTTGTCAAGCCCTCCTCCGAATGTTTCATCGTTGGCGGCATCGAACTCATCGTCAAAAATGTTGTGTTCTTCATCGCTATCTGCTAGGGACTCGGGGAAATCGTCTGAAAATATGCAATGAAACAAGAACAACATGAATGAAATCTTACCGAACATTAATTCTCCTTCAATCTCCTCGAGAGTTTTACCATACTTTTTAACTTCATCCATACCCGATCGTTTGAGTTGATGATTAGATGTCCGTCAAAACCTGCAAAAAATAGGTTTAAGACGCTCCGAATTGGGTTAAACTGAGAGATAAATTTATGAATGCTCTTGGCATGCATTCCGATAAGATAATAATTGGCYTACCACAGCCATAACTATCGATTTTTTCAGAAGAATGTTCCCTAATTGTAAAAAAACGAATCATTGAAAAATTGAGCAAAAAGATCGATTTTCTGTGGAAAACGCCTGCTGTCCGCCCGTACACAGCCTCGTATTTCGCAGCAAAGAAAATGTCGTCGCGATGAGACCAGCTGGCTAATCACGAGTGTGTGCCTTTAATCAGAGACCATGAGAAAATGAGAGACCCCAGAGAGCGCAAAACGAGGCAATTCAAAAATACTTTTTCACAGCAATGTTTCCTCTATCAGAGAAACATTTACCGTAAAACCTGTATTAGAAGAGCCCCTTCAATAAAAGAATCAACGAAAAGCGTGTAACTTTTCTTTTGTAATTCATGTCATTCTTCTGTCTGAGAGCGTGCAGTATGCATAATTTTGTTATAAATGAAAGAACATATAAGTAATCTTACATTATTTATTTCAATGTATTCAATGAAAATCAGCAAAGCTCCAAAGAATATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>337 165 161 147 118 44 14 10 4</canonical_bands>
                <polymorphic_bands>347 165 161 147 118 44 14 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTCGAGAGTTTTACCATACTTT</pcr_primer_p1>
		<pcr_primer_p2>CAATTTTTCAATGATTCGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCTCGAGAGTTTTACCATACTTTTTAACTTCATCCATACCCGATCGTTTGAGTTGATGATTAGATGTCCGTCAAAACCTGCAAAAAATAGGTTTAAGACGCTCCGAATTGGGTTAAACTGAGAGATAAATTTATGAATGCTCTTGGCATGCATTCCGATAAGATAATAATTGGCTTACCACAGCCATAACTATCGATTTTTTCAGAAGAATGTTCCCTAATTGTAAAAAAACGAATCATTGAAAAATTG</canonical_amplicon>
		<polymorphic_amplicon>CCTCGAGAGTTTTACCATACTTTTTAACTTCATCCATACCCGATCGTTTGAGTTGATGATTAGATGTCCGTCAAAACCTGCAAAAAATAGGTTTAAGACGCTCCGAATTGGGTTAAACTGAGAGATAAATTTATGAATGCTCTTGGCATGCATTCCGATAAGATAATAATTGGCYTACCACAGCCATAACTATCGATTTTTTCAGAAGAATGTTCCCTAATTGTAAAAAAACGAATCATTGAAAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7087</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>713801</contig_pos>
        <strand>+</strand>
        <context>CCTGTATTAG[A/C]AGAGCCCCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAGCAATGTTTCCTCTATCAGAGAAACATTTACCGTAAAACCTGTATTAG</left_flank>
        <right_flank>AGAGCCCCTTCAATAAAAGAATCAACGAAAAGCGTGTAACTTTTCTTTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAATCTCCTCGAGAGTTTTACCATACTTTTTAACTTCATCCATACCCGATCGTTTGAGTTGATGATTAGATGTCCGTCAAAACCTGCAAAAAATAGGTTTAAGACGCTCCGAATTGGGTTAAACTGAGAGATAAATTTATGAATGCTCTTGGCATGCATTCCGATAAGATAATAATTGGCTTACCACAGCCATAACTATCGATTTTTTCAGAAGAATGTTCCCTAATTGTAAAAAAACGAATCATTGAAAAATTGAGCAAAAAGATCGATTTTCTGTGGAAAACGCCTGCTGTCCGCCCGTACACAGCCTCGTATTTCGCAGCAAAGAAAATGTCGTCGCGATGAGACCAGCTGGCTAATCACGAGTGTGTGCCTTTAATCAGAGACCATGAGAAAATGAGAGACCCCAGAGAGCGCAAAACGAGGCAATTCAAAAATACTTTTTCACAGCAATGTTTCCTCTATCAGAGAAACATTTACCGTAAAACCTGTATTAGAAGAGCCCCTTCAATAAAAGAATCAACGAAAAGCGTGTAACTTTTCTTTTGTAATTCATGTCATTCTTCTGTCTGAGAGCGTGCAGTATGCATAATTTTGTTATAAATGAAAGAACATATAAGTAATCTTACATTATTTATTTCAATGTATTCAATGAAAATCAGCAAAGCTCCAAAGAATATGAACACTTTATCAAAGAAAAAAACATATTATTCATTGAATGTAGTAATGATTGGTTCATGGAAGCTAAGAACACCCTTTTCAACTGCTTCAGTGTATAGTTCTCGATCGCAAATCATCATATTCTCTCGTTTACCAGCGACAAAATCATTGAATTCCTGGATCAAAAACGTGGCGAATGGAGTTGCTTGGATGAACGCATCCGATCGAGCAGCCTCGTCCCATACACACTGAGAAATCAACTGCTCTTCAGAAGGATCAGGATGCTTCGAGTCGAACACGTATTCCTTTTTGTAGTCGTCAATTTTTTGTTTGCATAT</canonical>
            <polymorphic>TTCAATCTCCTCGAGAGTTTTACCATACTTTTTAACTTCATCCATACCCGATCGTTTGAGTTGATGATTAGATGTCCGTCAAAACCTGCAAAAAATAGGTTTAAGACGCTCCGAATTGGGTTAAACTGAGAGATAAATTTATGAATGCTCTTGGCATGCATTCCGATAAGATAATAATTGGCTTACCACAGCCATAACTATCGATTTTTTCAGAAGAATGTTCCCTAATTGTAAAAAAACGAATCATTGAAAAATTGAGCAAAAAGATCGATTTTCTGTGGAAAACGCCTGCTGTCCGCCCGTACACAGCCTCGTATTTCGCAGCAAAGAAAATGTCGTCGCGATGAGACCAGCTGGCTAATCACGAGTGTGTGCCTTTAATCAGAGACCATGAGAAAATGAGAGACCCCAGAGAGCGCAAAACGAGGCAATTCAAAAATACTTTTTCACAGCAATGTTTCCTCTATCAGAGAAACATTTACCGTAAAACCTGTATTAGMAGAGCCCCTTCAATAAAAGAATCAACGAAAAGCGTGTAACTTTTCTTTTGTAATTCATGTCATTCTTCTGTCTGAGAGCGTGCAGTATGCATAATTTTGTTATAAATGAAAGAACATATAAGTAATCTTACATTATTTATTTCAATGTATTCAATGAAAATCAGCAAAGCTCCAAAGAATATGAACACTTTATCAAAGAAAAAAACATATTATTCATTGAATGTAGTAATGATTGGTTCATGGAAGCTAAGAACACCCTTTTCAACTGCTTCAGTGTATAGTTCTCGATCGCAAATCATCATATTCTCTCGTTTACCAGCGACAAAATCATTGAATTCCTGGATCAAAAACGTGGCGAATGGAGTTGCTTGGATGAACGCATCCGATCGAGCAGCCTCGTCCCATACACACTGAGAAATCAACTGCTCTTCAGAAGGATCAGGATGCTTCGAGTCGAACACGTATTCCTTTTTGTAGTCGTCAATTTTTTGTTTGCATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATACTTTTTCACAGCAATGTT</pcr_primer_p1>
		<pcr_primer_p2>GTTCATATTCTTTGGAGCTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATACTTTTTCACAGCAATGTTTCCTCTATCAGAGAAACATTTACCGTAAAACCTGTATTAGAAGAGCCCCTTCAATAAAAGAATCAACGAAAAGCGTGTAACTTTTCTTTTGTAATTCATGTCATTCTTCTGTCTGAGAGCGTGCAGTATGCATAATTTTGTTATAAATGAAAGAACATATAAGTAATCTTACATTATTTATTTCAATGTATTCAATGAAAATCAGCAAAGCTCCAAAGAATATGAAC</canonical_amplicon>
		<polymorphic_amplicon>AAATACTTTTTCACAGCAATGTTTCCTCTATCAGAGAAACATTTACCGTAAAACCTGTATTAGMAGAGCCCCTTCAATAAAAGAATCAACGAAAAGCGTGTAACTTTTCTTTTGTAATTCATGTCATTCTTCTGTCTGAGAGCGTGCAGTATGCATAATTTTGTTATAAATGAAAGAACATATAAGTAATCTTACATTATTTATTTCAATGTATTCAATGAAAATCAGCAAAGCTCCAAAGAATATGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7107</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>715850</contig_pos>
        <strand>+</strand>
        <context>TCGGACGGTC[G/T]TTAGTGACCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCATCGTAACAAAAAATACCAAATTTGAAAGGTAACCGAATCGGACGGTC</left_flank>
        <right_flank>TTAGTGACCTCTATCGTAATCGGCCAAACATTACGATGATGAAAAACTAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTCCAATGGCTACACGAGCGGCTTCATTTGTGTTTTCACAAGTCCACAGGATCTCCTTATCTTTACAATACTCTTCACACTTTTCTGTTGTATTCAAGCTAATAATTTCGTCAATCAGCTCCTGAGGATGGTTGAGACGGATTTCAGAGTCATCCGCTTCACGTGCCTCAATCTAAAAAATTTAAAGCTTCTGAAATTTCTGAAGATCATTAAGACCCACTTTTAATGCTTTTTCGAGAAGTGTATCATCCTTAATTCGTTCATAGATCAATTTCATTCTCTTTGGACATTCCGCCATCGTAGAATCATACTTACACTCATGCCCAAGCATCCGTTCATCATAAACATATCCAAAAGGTTTAGAAGACATGTAGCGCTGGAATTTTAATTTTTTAAGATATAGAAATTCACTCAAAACTTTGAAAAAGATGATTGAAATTTCTAATAGCATCGTAACAAAAAATACCAAATTTGAAAGGTAACCGAATCGGACGGTCGTTAGTGACCTCTATCGTAATCGGCCAAACATTACGATGATGAAAAACTACTGATAAGTAATCGTAGAACACAAAAATTGCAATATTGTGAGATGTGTGTAATGTCAGTCACTTTTTTTGACTTGTGTACTACTTTCCCTATCTTCCTATTGGATCTAATCTAATCTAAAAAAATAGAAAAAATACATTTACTGTAACACCTGTATTAGAAGGGCCCCTGTAATAGAAAGGCCCCTCTAATAGAAGGGCCCTCCTAGAGGGGCTTGGAAAAATAGAAGGGCTGTAATAGAAGGACCCCCGTTATAGAAGGTCCCCTTGTAATAGAAGGACCCCCGTAATAGAAGGGCCCTTTGGGAAAAATGACCACGTTCAAAAAGTGTTTTGAAATTAGAAAATTTCAGCACTTTTTCAGAAAAAAATTCCTGGAACTCCATAATTTAATAGAAATTTGTTGTAACTGCATTTTTCAATGAAAATCTTGCTAAATTTCGGTGAAATTGG</canonical>
            <polymorphic>ACCTCCAATGGCTACACGAGCGGCTTCATTTGTGTTTTCACAAGTCCACAGGATCTCCTTATCTTTACAATACTCTTCACACTTTTCTGTTGTATTCAAGCTAATAATTTCGTCAATCAGCTCCTGAGGATGGTTGAGACGGATTTCAGAGTCATCCGCTTCACGTGCCTCAATCTAAAAAATTTAAAGCTTCTGAAATTTCTGAAGATCATTAAGACCCACTTTTAATGCTTTTTCGAGAAGTGTATCATCCTTAATTCGTTCATAGATCAATTTCATTCTCTTTGGACATTCCGCCATCGTAGAATCATACTTACACTCATGCCCAAGCATCCGTTCATCATAAACATATCCAAAAGGTTTAGAAGACATGTAGCGCTGGAATTTTAATTTTTTAAGATATAGAAATTCACTCAAAACTTTGAAAAAGATGATTGAAATTTCTAATAGCATCGTAACAAAAAATACCAAATTTGAAAGGTAACCGAATCGGACGGTCKTTAGTGACCTCTATCGTAATCGGCCAAACATTACGATGATGAAAAACTACTGATAAGTAATCGTAGAACACAAAAATTGCAATATTGTGAGATGTGTGTAATGTCAGTCACTTTTTTTGACTTGTGTACTACTTTCCCTATCTTCCTATTGGATCTAATCTAATCTAAAAAAATAGAAAAAATACATTTACTGTAACACCTGTATTAGAAGGGCCCCTGTAATAGAAAGGCCCCTCTAATAGAAGGGCCCTCCTAGAGGGGCTTGGAAAAATAGAAGGGCTGTAATAGAAGGACCCCCGTTATAGAAGGTCCCCTTGTAATAGAAGGACCCCCGTAATAGAAGGGCCCTTTGGGAAAAATGACCACGTTCAAAAAGTGTTTTGAAATTAGAAAATTTCAGCACTTTTTCAGAAAAAAATTCCTGGAACTCCATAATTTAATAGAAATTTGTTGTAACTGCATTTTTCAATGAAAATCTTGCTAAATTTCGGTGAAATTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCAAAACTTTGAAAAAGATGA</pcr_primer_p1>
		<pcr_primer_p2>GATTAGATCCAATAGGAAGATAGG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTCAAAACTTTGAAAAAGATGATTGAAATTTCTAATAGCATCGTAACAAAAAATACCAAATTTGAAAGGTAACCGAATCGGACGGTCGTTAGTGACCTCTATCGTAATCGGCCAAACATTACGATGATGAAAAACTACTGATAAGTAATCGTAGAACACAAAAATTGCAATATTGTGAGATGTGTGTAATGTCAGTCACTTTTTTTGACTTGTGTACTACTTTCCCTATCTTCCTATTGGATCTAATC</canonical_amplicon>
		<polymorphic_amplicon>ACTCAAAACTTTGAAAAAGATGATTGAAATTTCTAATAGCATCGTAACAAAAAATACCAAATTTGAAAGGTAACCGAATCGGACGGTCKTTAGTGACCTCTATCGTAATCGGCCAAACATTACGATGATGAAAAACTACTGATAAGTAATCGTAGAACACAAAAATTGCAATATTGTGAGATGTGTGTAATGTCAGTCACTTTTTTTGACTTGTGTACTACTTTCCCTATCTTCCTATTGGATCTAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7108</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>825486</contig_pos>
        <strand>+</strand>
        <context>TTTGGGAGAA[G/T]ATTTCAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTGAAGTCTAAAAATAATATTTTCTCGTCAGTTCAAAATTTGGGAGAA</left_flank>
        <right_flank>ATTTCAAAAAAAGTTGAACATCTGAAGATTTTACTCCCAAAAACTCAAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAGTCAATTTCGAAGAAGGAGAGAAAGTGCCAAGAACAACAACACAAACGGCCGCAGGATCAGATATAAATAGGCGAAGGGCAAAAAACGGAACAGAAGCAGTCCTCATCCCATTCACACCTTTTGCAGAAAACGCAACACTTTTTAGCCGATTTTCAGTTTTGATCGCCATTTTGCATCTATTCTCTGTACCGTCTTCTTCTTGCCACCATGTGGGGCGGCATCCGTCCTTTACGTAACTGATTTATTGGATTAGACACTCGTGCGTTCGATGTTTTCAGTTTATATGCGTATAGCTTATTGGGGCAGATTATTGCCCATATTCCGTCCTTTTTGAGACTTTCTATTCCTATTTTCATATTTTCTCTGATCAGCTATATTTTCCGTATTTTCTCCTATTAGAAAGTTAGTGAAACTGTTTGAAAGTTCCTAGATAGTGTTGATGGATTTTGAAGTCTAAAAATAATATTTTCTCGTCAGTTCAAAATTTGGGAGAAGATTTCAAAAAAAGTTGAACATCTGAAGATTTTACTCCCAAAAACTCAAAAGTTGTAAATTCTTCAATTCGAATATAATTATTTTTCACAGAAAATTTTTCTGATAATTTCAAACAACAATCCATCTAAATAGAATCTCAGAAATTCTGAAAAATATACAGTAACGTTCAATGAGATATTGAAAAACGTATTTCTAGTTGGTTTTCGGCCATTTTTAATTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAGTTTAGATATTTGACACAGGAAAGATGTAACCGGTAGAAAAAGAAAAATAGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACAGGGGAACAATTGAAGAAA</canonical>
            <polymorphic>TTGAGTCAATTTCGAAGAAGGAGAGAAAGTGCCAAGAACAACAACACAAACGGCCGCAGGATCAGATATAAATAGGCGAAGGGCAAAAAACGGAACAGAAGCAGTCCTCATCCCATTCACACCTTTTGCAGAAAACGCAACACTTTTTAGCCGATTTTCAGTTTTGATCGCCATTTTGCATCTATTCTCTGTACCGTCTTCTTCTTGCCACCATGTGGGGCGGCATCCGTCCTTTACGTAACTGATTTATTGGATTAGACACTCGTGCGTTCGATGTTTTCAGTTTATATGCGTATAGCTTATTGGGGCAGATTATTGCCCATATTCCGTCCTTTTTGAGACTTTCTATTCCTATTTTCATATTTTCTCTGATCAGCTATATTTTCCGTATTTTCTCCTATTAGAAAGTTAGTGAAACTGTTTGAAAGTTCCTAGATAGTGTTGATGGATTTTGAAGTCTAAAAATAATATTTTCTCGTCAGTTCAAAATTTGGGAGAAKATTTCAAAAAAAGTTGAACATCTGAAGATTTTACTCCCAAAAACTCAAAAGTTGTAAATTCTTCAATTCGAATATAATTATTTTTCACAGAAAATTTTTCTGATAATTTCAAACAACAATCCATCTAAATAGAATCTCAGAAATTCTGAAAAATATACAGTAACGTTCAATGAGATATTGAAAAACGTATTTCTAGTTGGTTTTCGGCCATTTTTAATTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAGTTTAGATATTTGACACAGGAAAGATGTAACCGGTAGAAAAAGAAAAATAGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACAGGGGAACAATTGAAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTATATTTTCCGTATTTTCTCC</pcr_primer_p1>
		<pcr_primer_p2>GATGGATTGTTGTTTGAAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTATATTTTCCGTATTTTCTCCTATTAGAAAGTTAGTGAAACTGTTTGAAAGTTCCTAGATAGTGTTGATGGATTTTGAAGTCTAAAAATAATATTTTCTCGTCAGTTCAAAATTTGGGAGAAGATTTCAAAAAAAGTTGAACATCTGAAGATTTTACTCCCAAAAACTCAAAAGTTGTAAATTCTTCAATTCGAATATAATTATTTTTCACAGAAAATTTTTCTGATAATTTCAAACAACAATCCATC</canonical_amplicon>
		<polymorphic_amplicon>GCTATATTTTCCGTATTTTCTCCTATTAGAAAGTTAGTGAAACTGTTTGAAAGTTCCTAGATAGTGTTGATGGATTTTGAAGTCTAAAAATAATATTTTCTCGTCAGTTCAAAATTTGGGAGAAKATTTCAAAAAAAGTTGAACATCTGAAGATTTTACTCCCAAAAACTCAAAAGTTGTAAATTCTTCAATTCGAATATAATTATTTTTCACAGAAAATTTTTCTGATAATTTCAAACAACAATCCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7109</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>827084</contig_pos>
        <strand>+</strand>
        <context>AGAGGCCGGA[C/T]CTTTCTTCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACTTTCTTATGGTTTTCCATAACACAGTACCCCAAAAGAAGAGGCCGGA</left_flank>
        <right_flank>CTTTCTTCTGATATTTTTATCAAATGAATTCTAAAGTTTTGTTTGTTACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCACCTACTCTTCTTACCTACTTTTCTTCACTTTCTTATTTCGTATTACAGTACATAACCTATCATTTAGCGTCCACTCCATTAATGCAACATTTTCACTTTTCACTCTGAAACCGAAAACTCTTTTTTCTTTTTCCTAAATTGTCACTTTTCACTCTACTTTTCCCCCACAAATAGTCGGTTTCCTTAGTGAATGTTTTTTTTTCTTCCGGAACGAATTCTTACTTTTCGTTTCCATCACTTGCTTTCACTCTTCCTGGTTAAAAAACGACTGTCCTGCCCAGTCCGTGACGGTCTATTAGTACCAAAAAGAAGTCGCATGGTGTTGGACACAGAGACACGGTGCCAATTATTGGTGTTGGCATGGCAATGCAAAAAAGGAACGACTAGGAGGGACGACTCCGCCCCCATTTGGAAAGTAGTAGACGAGAAACAACAGAGGATACTCACTTTCTTATGGTTTTCCATAACACAGTACCCCAAAAGAAGAGGCCGGATCTTTCTTCTGATATTTTTATCAAATGAATTCTAAAGTTTTGTTTGTTACAAACTATAATATTTCAGTTCTAGTCAAAATAACTTTTTTCTTGTCGATTTTTGAGCTGGAAACCCGATTTTTAGGAAATTTTCATTAAAAGCGATTGGTTCAGAAAAAACTTTCGAATTTTTCATTATCTACGTGCCTGTTTGAAGCGTCAGAGATGCTTCAAACATCTGACTCACTTTTTTGAAAGACTTTTTTGACAGTATATGGATAAATGAGCAATTTTATGTACCGTAAAACCTAAAATAGAAGGACCCTCTTACTGTCACGTTTGAGCTGATTTTTTTTGGCTCCAGTGTGAGATATCAAAAATGTGTCAACTGACAAAAAATTTCTGATATTATGATGAAAAATTTATCAGTCTTTATATCTTGGACAGGGTCCGAGAAAAATTGGCTCAAAATTGACAGTTAGGAGCCCTTCTATTACAGGTTTTATTGTATTTTGCATTGAA</canonical>
            <polymorphic>AACCACCTACTCTTCTTACCTACTTTTCTTCACTTTCTTATTTCGTATTACAGTACATAACCTATCATTTAGCGTCCACTCCATTAATGCAACATTTTCACTTTTCACTCTGAAACCGAAAACTCTTTTTTCTTTTTCCTAAATTGTCACTTTTCACTCTACTTTTCCCCCACAAATAGTCGGTTTCCTTAGTGAATGTTTTTTTTTCTTCCGGAACGAATTCTTACTTTTCGTTTCCATCACTTGCTTTCACTCTTCCTGGTTAAAAAACGACTGTCCTGCCCAGTCCGTGACGGTCTATTAGTACCAAAAAGAAGTCGCATGGTGTTGGACACAGAGACACGGTGCCAATTATTGGTGTTGGCATGGCAATGCAAAAAAGGAACGACTAGGAGGGACGACTCCGCCCCCATTTGGAAAGTAGTAGACGAGAAACAACAGAGGATACTCACTTTCTTATGGTTTTCCATAACACAGTACCCCAAAAGAAGAGGCCGGAYCTTTCTTCTGATATTTTTATCAAATGAATTCTAAAGTTTTGTTTGTTACAAACTATAATATTTCAGTTCTAGTCAAAATAACTTTTTTCTTGTCGATTTTTGAGCTGGAAACCCGATTTTTAGGAAATTTTCATTAAAAGCGATTGGTTCAGAAAAAACTTTCGAATTTTTCATTATCTACGTGCCTGTTTGAAGCGTCAGAGATGCTTCAAACATCTGACTCACTTTTTTGAAAGACTTTTTTGACAGTATATGGATAAATGAGCAATTTTATGTACCGTAAAACCTAAAATAGAAGGACCCTCTTACTGTCACGTTTGAGCTGATTTTTTTTGGCTCCAGTGTGAGATATCAAAAATGTGTCAACTGACAAAAAATTTCTGATATTATGATGAAAAATTTATCAGTCTTTATATCTTGGACAGGGTCCGAGAAAAATTGGCTCAAAATTGACAGTTAGGAGCCCTTCTATTACAGGTTTTATTGTATTTTGCATTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGGATACTCACTTTCTTATGGT</pcr_primer_p1>
		<pcr_primer_p2>AGGCACGTAGATAATGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGAGGATACTCACTTTCTTATGGTTTTCCATAACACAGTACCCCAAAAGAAGAGGCCGGATCTTTCTTCTGATATTTTTATCAAATGAATTCTAAAGTTTTGTTTGTTACAAACTATAATATTTCAGTTCTAGTCAAAATAACTTTTTTCTTGTCGATTTTTGAGCTGGAAACCCGATTTTTAGGAAATTTTCATTAAAAGCGATTGGTTCAGAAAAAACTTTCGAATTTTTCATTATCTACGTGCCT</canonical_amplicon>
		<polymorphic_amplicon>AGAGGATACTCACTTTCTTATGGTTTTCCATAACACAGTACCCCAAAAGAAGAGGCCGGAYCTTTCTTCTGATATTTTTATCAAATGAATTCTAAAGTTTTGTTTGTTACAAACTATAATATTTCAGTTCTAGTCAAAATAACTTTTTTCTTGTCGATTTTTGAGCTGGAAACCCGATTTTTAGGAAATTTTCATTAAAAGCGATTGGTTCAGAAAAAACTTTCGAATTTTTCATTATCTACGTGCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7158</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>10041</contig_pos>
        <strand>+</strand>
        <context>TCTCTCCGTG[C/T]CTTATTTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCACTCTGAAAACCTTTGAAAACGATTCTCTCTATCTCTTTCTCTCCGTG</left_flank>
        <right_flank>CTTATTTTCTATTCTCTAGTTCCTTTTTTCTGGTTTTGTAGTCAAACATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGAGTCTCTATCGAATTGCTGGTTGCTCATAGAACGGCGGGGGGTATGATAGACCGGTATCAAATCACGGAATGACGAGAAAATCTAGAGTTTTGAATGGGTCTCCAGTCGACGCATCATACTCATACAACTCTCACAAATCACGCTTAGAACACGTTTCCAGGACTCCGAGCTGACAATATGTGTTTCCTTCGTTTCCTCTTTCTTTCACACTCTCTCTGAAAACCACTTTATTTGCCTTCATTCTCTATTCCTTTCTTCTAGAGATGAGAGACTCAGCGCATTCGCTTTCTCTGCGTCTCTATCTCTCCCATACTGTTTTCTTTGACGTTTCGGAAGAGTTGCTGTGCTCGCCCAATCCTGGTTTTATCATTTTTCCACTCACTGAAACTCACTCAATTTCAAAATTGAATTTGAATGTTGTCAAGTGTTCAATGCATTGGTAACCACTCTGAAAACCTTTGAAAACGATTCTCTCTATCTCTTTCTCTCCGTGCCTTATTTTCTATTCTCTAGTTCCTTTTTTCTGGTTTTGTAGTCAAACATCCCGAGAGTGTTGACCTTATGGTCATAGTAGTCTTTTGGCCACGCCCCTCGGGTCTCTCTATTTCCATTCCATACCGCCCATATGTTATAAGGAATAAGAAATACCCACTGACCCTTACTATTAGATTCTGGTCTCAAGACAACCAACATCTCTTTAATTCTTTGTTGAAGCAAAGAAATATTCCTAACCTAATATGAAAATATTAGCTAAATTAGCTAAACAAATGACCGCTAGTTTTCTGAGAAATAATAGTTCAAGACGGGTTAAACAGGTTGGTGTTTTAGTCTTTTTTTTTGTTCTGATTCCTTAAAGAATCAGATTTTATCTCCGTTCTTTTCTTATTGAAATACTAGTTTCAATTGTTTTTCTGTTACCTTCAAACATCATGAGTATTCAAAAAAGTCCAAATATTTTGAACATTCCGAGTTCAAATGTAGAAACATTTTGAAT</canonical>
            <polymorphic>AAATGAGTCTCTATCGAATTGCTGGTTGCTCATAGAACGGCGGGGGGTATGATAGACCGGTATCAAATCACGGAATGACGAGAAAATCTAGAGTTTTGAATGGGTCTCCAGTCGACGCATCATACTCATACAACTCTCACAAATCACGCTTAGAACACGTTTCCAGGACTCCGAGCTGACAATATGTGTTTCCTTCGTTTCCTCTTTCTTTCACACTCTCTCTGAAAACCACTTTATTTGCCTTCATTCTCTATTCCTTTCTTCTAGAGATGAGAGACTCAGCGCATTCGCTTTCTCTGCGTCTCTATCTCTCCCATACTGTTTTCTTTGACGTTTCGGAAGAGTTGCTGTGCTCGCCCAATCCTGGTTTTATCATTTTTCCACTCACTGAAACTCACTCAATTTCAAAATTGAATTTGAATGTTGTCAAGTGTTCAATGCATTGGTAACCACTCTGAAAACCTTTGAAAACGATTCTCTCTATCTCTTTCTCTCCGTGYCTTATTTTCTATTCTCTAGTTCCTTTTTTCTGGTTTTGTAGTCAAACATCCCGAGAGTGTTGACCTTATGGTCATAGTAGTCTTTTGGCCACGCCCCTCGGGTCTCTCTATTTCCATTCCATACCGCCCATATGTTATAAGGAATAAGAAATACCCACTGACCCTTACTATTAGATTCTGGTCTCAAGACAACCAACATCTCTTTAATTCTTTGTTGAAGCAAAGAAATATTCCTAACCTAATATGAAAATATTAGCTAAATTAGCTAAACAAATGACCGCTAGTTTTCTGAGAAATAATAGTTCAAGACGGGTTAAACAGGTTGGTGTTTTAGTCTTTTTTTTTGTTCTGATTCCTTAAAGAATCAGATTTTATCTCCGTTCTTTTCTTATTGAAATACTAGTTTCAATTGTTTTTCTGTTACCTTCAAACATCATGAGTATTCAAAAAAGTCCAAATATTTTGAACATTCCGAGTTCAAATGTAGAAACATTTTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGAATTTGAATGTTGTCAAGT</pcr_primer_p1>
		<pcr_primer_p2>CAGTGGGTATTTCTTATTCCTTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTGAATTTGAATGTTGTCAAGTGTTCAATGCATTGGTAACCACTCTGAAAACCTTTGAAAACGATTCTCTCTATCTCTTTCTCTCCGTGCCTTATTTTCTATTCTCTAGTTCCTTTTTTCTGGTTTTGTAGTCAAACATCCCGAGAGTGTTGACCTTATGGTCATAGTAGTCTTTTGGCCACGCCCCTCGGGTCTCTCTATTTCCATTCCATACCGCCCATATGTTATAAGGAATAAGAAATACCCACTG</canonical_amplicon>
		<polymorphic_amplicon>ATTGAATTTGAATGTTGTCAAGTGTTCAATGCATTGGTAACCACTCTGAAAACCTTTGAAAACGATTCTCTCTATCTCTTTCTCTCCGTGYCTTATTTTCTATTCTCTAGTTCCTTTTTTCTGGTTTTGTAGTCAAACATCCCGAGAGTGTTGACCTTATGGTCATAGTAGTCTTTTGGCCACGCCCCTCGGGTCTCTCTATTTCCATTCCATACCGCCCATATGTTATAAGGAATAAGAAATACCCACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7159</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>10276</contig_pos>
        <strand>+</strand>
        <context>GAAATATTCC[C/T]AACCTAATAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAGACAACCAACATCTCTTTAATTCTTTGTTGAAGCAAAGAAATATTCC</left_flank>
        <right_flank>AACCTAATATGAAAATATTAGCTAAATTAGCTAAACAAATGACCGCTAGT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGCCTTCATTCTCTATTCCTTTCTTCTAGAGATGAGAGACTCAGCGCATTCGCTTTCTCTGCGTCTCTATCTCTCCCATACTGTTTTCTTTGACGTTTCGGAAGAGTTGCTGTGCTCGCCCAATCCTGGTTTTATCATTTTTCCACTCACTGAAACTCACTCAATTTCAAAATTGAATTTGAATGTTGTCAAGTGTTCAATGCATTGGTAACCACTCTGAAAACCTTTGAAAACGATTCTCTCTATCTCTTTCTCTCCGTGCCTTATTTTCTATTCTCTAGTTCCTTTTTTCTGGTTTTGTAGTCAAACATCCCGAGAGTGTTGACCTTATGGTCATAGTAGTCTTTTGGCCACGCCCCTCGGGTCTCTCTATTTCCATTCCATACCGCCCATATGTTATAAGGAATAAGAAATACCCACTGACCCTTACTATTAGATTCTGGTCTCAAGACAACCAACATCTCTTTAATTCTTTGTTGAAGCAAAGAAATATTCCTAACCTAATATGAAAATATTAGCTAAATTAGCTAAACAAATGACCGCTAGTTTTCTGAGAAATAATAGTTCAAGACGGGTTAAACAGGTTGGTGTTTTAGTCTTTTTTTTTGTTCTGATTCCTTAAAGAATCAGATTTTATCTCCGTTCTTTTCTTATTGAAATACTAGTTTCAATTGTTTTTCTGTTACCTTCAAACATCATGAGTATTCAAAAAAGTCCAAATATTTTGAACATTCCGAGTTCAAATGTAGAAACATTTTGAATGACATCATTGCCATAAACACTCCAATAGACTGCCATCCGAAACTTTGAGCTCATATATCTCGGTTTTTGTAGAAGATATCGAAAAATAATTAATTGATAGAATGCCCATCATAATATCAACAATATTTTGTTAGTTAACCAATTTTCGATATCTTTCACAGGAATCGAGTTAAATTGAATCAAAATTGACGGTTGGCATTCTTTTAGAGTATTTACGGTATTTCAAATTTATCGT</canonical>
            <polymorphic>ATTTGCCTTCATTCTCTATTCCTTTCTTCTAGAGATGAGAGACTCAGCGCATTCGCTTTCTCTGCGTCTCTATCTCTCCCATACTGTTTTCTTTGACGTTTCGGAAGAGTTGCTGTGCTCGCCCAATCCTGGTTTTATCATTTTTCCACTCACTGAAACTCACTCAATTTCAAAATTGAATTTGAATGTTGTCAAGTGTTCAATGCATTGGTAACCACTCTGAAAACCTTTGAAAACGATTCTCTCTATCTCTTTCTCTCCGTGCCTTATTTTCTATTCTCTAGTTCCTTTTTTCTGGTTTTGTAGTCAAACATCCCGAGAGTGTTGACCTTATGGTCATAGTAGTCTTTTGGCCACGCCCCTCGGGTCTCTCTATTTCCATTCCATACCGCCCATATGTTATAAGGAATAAGAAATACCCACTGACCCTTACTATTAGATTCTGGTCTCAAGACAACCAACATCTCTTTAATTCTTTGTTGAAGCAAAGAAATATTCCYAACCTAATATGAAAATATTAGCTAAATTAGCTAAACAAATGACCGCTAGTTTTCTGAGAAATAATAGTTCAAGACGGGTTAAACAGGTTGGTGTTTTAGTCTTTTTTTTTGTTCTGATTCCTTAAAGAATCAGATTTTATCTCCGTTCTTTTCTTATTGAAATACTAGTTTCAATTGTTTTTCTGTTACCTTCAAACATCATGAGTATTCAAAAAAGTCCAAATATTTTGAACATTCCGAGTTCAAATGTAGAAACATTTTGAATGACATCATTGCCATAAACACTCCAATAGACTGCCATCCGAAACTTTGAGCTCATATATCTCGGTTTTTGTAGAAGATATCGAAAAATAATTAATTGATAGAATGCCCATCATAATATCAACAATATTTTGTTAGTTAACCAATTTTCGATATCTTTCACAGGAATCGAGTTAAATTGAATCAAAATTGACGGTTGGCATTCTTTTAGAGTATTTACGGTATTTCAAATTTATCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAATAAGAAATACCCACTGAC</pcr_primer_p1>
		<pcr_primer_p2>AAGAAAAGAACGGAGATAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGGAATAAGAAATACCCACTGACCCTTACTATTAGATTCTGGTCTCAAGACAACCAACATCTCTTTAATTCTTTGTTGAAGCAAAGAAATATTCCTAACCTAATATGAAAATATTAGCTAAATTAGCTAAACAAATGACCGCTAGTTTTCTGAGAAATAATAGTTCAAGACGGGTTAAACAGGTTGGTGTTTTAGTCTTTTTTTTTGTTCTGATTCCTTAAAGAATCAGATTTTATCTCCGTTCTTTTCTT</canonical_amplicon>
		<polymorphic_amplicon>AGGAATAAGAAATACCCACTGACCCTTACTATTAGATTCTGGTCTCAAGACAACCAACATCTCTTTAATTCTTTGTTGAAGCAAAGAAATATTCCYAACCTAATATGAAAATATTAGCTAAATTAGCTAAACAAATGACCGCTAGTTTTCTGAGAAATAATAGTTCAAGACGGGTTAAACAGGTTGGTGTTTTAGTCTTTTTTTTTGTTCTGATTCCTTAAAGAATCAGATTTTATCTCCGTTCTTTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7160</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>10447</contig_pos>
        <strand>+</strand>
        <context>AATACTAGTT[C/T]CAATTGTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTAAAGAATCAGATTTTATCTCCGTTCTTTTCTTATTGAAATACTAGTT</left_flank>
        <right_flank>CAATTGTTTTTCTGTTACCTTCAAACATCATGAGTATTCAAAAAAGTCCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTGAATTTGAATGTTGTCAAGTGTTCAATGCATTGGTAACCACTCTGAAAACCTTTGAAAACGATTCTCTCTATCTCTTTCTCTCCGTGCCTTATTTTCTATTCTCTAGTTCCTTTTTTCTGGTTTTGTAGTCAAACATCCCGAGAGTGTTGACCTTATGGTCATAGTAGTCTTTTGGCCACGCCCCTCGGGTCTCTCTATTTCCATTCCATACCGCCCATATGTTATAAGGAATAAGAAATACCCACTGACCCTTACTATTAGATTCTGGTCTCAAGACAACCAACATCTCTTTAATTCTTTGTTGAAGCAAAGAAATATTCCTAACCTAATATGAAAATATTAGCTAAATTAGCTAAACAAATGACCGCTAGTTTTCTGAGAAATAATAGTTCAAGACGGGTTAAACAGGTTGGTGTTTTAGTCTTTTTTTTTGTTCTGATTCCTTAAAGAATCAGATTTTATCTCCGTTCTTTTCTTATTGAAATACTAGTTTCAATTGTTTTTCTGTTACCTTCAAACATCATGAGTATTCAAAAAAGTCCAAATATTTTGAACATTCCGAGTTCAAATGTAGAAACATTTTGAATGACATCATTGCCATAAACACTCCAATAGACTGCCATCCGAAACTTTGAGCTCATATATCTCGGTTTTTGTAGAAGATATCGAAAAATAATTAATTGATAGAATGCCCATCATAATATCAACAATATTTTGTTAGTTAACCAATTTTCGATATCTTTCACAGGAATCGAGTTAAATTGAATCAAAATTGACGGTTGGCATTCTTTTAGAGTATTTACGGTATTTCAAATTTATCGTAAATTTCCAACTTTTTCAGTAGGAAAATCTACTAGGGATACCCCAATATTTCCGACCCATTCAAAAAATCTTCTCCATATTTTTATACCCACTTCCTAATCGATCGTTCCAGAACCCGCAGATTCATACGCCTCCGGAGGGAAGTTCACCAGCCTCAACCAAGAACGCCTC</canonical>
            <polymorphic>AAAATTGAATTTGAATGTTGTCAAGTGTTCAATGCATTGGTAACCACTCTGAAAACCTTTGAAAACGATTCTCTCTATCTCTTTCTCTCCGTGCCTTATTTTCTATTCTCTAGTTCCTTTTTTCTGGTTTTGTAGTCAAACATCCCGAGAGTGTTGACCTTATGGTCATAGTAGTCTTTTGGCCACGCCCCTCGGGTCTCTCTATTTCCATTCCATACCGCCCATATGTTATAAGGAATAAGAAATACCCACTGACCCTTACTATTAGATTCTGGTCTCAAGACAACCAACATCTCTTTAATTCTTTGTTGAAGCAAAGAAATATTCCTAACCTAATATGAAAATATTAGCTAAATTAGCTAAACAAATGACCGCTAGTTTTCTGAGAAATAATAGTTCAAGACGGGTTAAACAGGTTGGTGTTTTAGTCTTTTTTTTTGTTCTGATTCCTTAAAGAATCAGATTTTATCTCCGTTCTTTTCTTATTGAAATACTAGTTYCAATTGTTTTTCTGTTACCTTCAAACATCATGAGTATTCAAAAAAGTCCAAATATTTTGAACATTCCGAGTTCAAATGTAGAAACATTTTGAATGACATCATTGCCATAAACACTCCAATAGACTGCCATCCGAAACTTTGAGCTCATATATCTCGGTTTTTGTAGAAGATATCGAAAAATAATTAATTGATAGAATGCCCATCATAATATCAACAATATTTTGTTAGTTAACCAATTTTCGATATCTTTCACAGGAATCGAGTTAAATTGAATCAAAATTGACGGTTGGCATTCTTTTAGAGTATTTACGGTATTTCAAATTTATCGTAAATTTCCAACTTTTTCAGTAGGAAAATCTACTAGGGATACCCCAATATTTCCGACCCATTCAAAAAATCTTCTCCATATTTTTATACCCACTTCCTAATCGATCGTTCCAGAACCCGCAGATTCATACGCCTCCGGAGGGAAGTTCACCAGCCTCAACCAAGAACGCCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAACAAATGACCGCTAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGATGTCATTCAAAATGTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TAAACAAATGACCGCTAGTTTTCTGAGAAATAATAGTTCAAGACGGGTTAAACAGGTTGGTGTTTTAGTCTTTTTTTTTGTTCTGATTCCTTAAAGAATCAGATTTTATCTCCGTTCTTTTCTTATTGAAATACTAGTTTCAATTGTTTTTCTGTTACCTTCAAACATCATGAGTATTCAAAAAAGTCCAAATATTTTGAACATTCCGAGTTCAAATGTAGAAACATTTTGAATGACATCAT</canonical_amplicon>
		<polymorphic_amplicon>TAAACAAATGACCGCTAGTTTTCTGAGAAATAATAGTTCAAGACGGGTTAAACAGGTTGGTGTTTTAGTCTTTTTTTTTGTTCTGATTCCTTAAAGAATCAGATTTTATCTCCGTTCTTTTCTTATTGAAATACTAGTTYCAATTGTTTTTCTGTTACCTTCAAACATCATGAGTATTCAAAAAAGTCCAAATATTTTGAACATTCCGAGTTCAAATGTAGAAACATTTTGAATGACATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7161</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>14077</contig_pos>
        <strand>+</strand>
        <context>GAGGCATAGC[A/G]CAGTTGGATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCATTTCTAGCTCATCTTCAGCATCATTGATAATTTTCAGAGGCATAGC</left_flank>
        <right_flank>CAGTTGGATCGAGCCAGAACTAAAACACGCCGAGCCTCCACATAGGCACC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACACCTGACGCTGACGTACCAGCGATACTTGGGTTCTTTGTTTCTTTGATTGCATATCGTTCAATGTGAGCATTCAATTCGTGAACATTCTTCAGATATTCAACGTCATCTGCATCCCCATAAGACAGGACCTGGAATGATAAAATATTCAGAGAATAAGCACAAAACCATACTTCGAACGGTTGCATTTGATTATCCACACAAACAGATTGGATTTTCTCAACGTTTTGTGTATCGAACCTTATCGTCTGCTTCGTAGTATCCGAACACATAGATGGGAGGCGAACAATGGGGACGGTGTGGTTGTCACCGAATACTAAAATCAAGAAATTTAGATCCGACGAGAATGCTTTTTCAATTACCAGGCAACTGTGTGAATGCTTTTCTCGTCTCCTCAAAATCATCGTCATCATCTGAATCCCTGTCTTGTAAATGTCTTCGCATATCTCTCATTTCTAGCTCATCTTCAGCATCATTGATAATTTTCAGAGGCATAGCGCAGTTGGATCGAGCCAGAACTAAAACACGCCGAGCCTCCACATAGGCACCTGCCAATTCAACACATTGCGACCAACGAGCATACAGTGCTGCGCATCTGTAAATTTCGAAGACTATTTATCAATTTGGATTACGAAATCCGACTTAATCAGGGACTGTCGACTGATAGCGAACTGATAAATGTCGTGTGCATGACCAGCACTGTTATCAGCCATTATCTCCCATATTTTCAGCATTCTCTCGTCTTCCTTGTACTGTTCCAGAAATCCTGGTCTAAAAATCTTCAGATACAGTTGTTCAAACGATAAAATTCACACCTGCTGATTACTTTCCAAAGCAATTCATAGTACAGTTTATGAGATCCGATTGCAAGTTTCTCTTCAAACCACGAACAGAACTCGAGAATCATCTGAATTTCGTCTTTTTCGGTCGAATCGCCCGCTTCTTGAAGTTCCTTGAAAAGGTTGTCAAGCTTTTCTCGTGCAGTAGCTTCCGTAACAA</canonical>
            <polymorphic>TACACCTGACGCTGACGTACCAGCGATACTTGGGTTCTTTGTTTCTTTGATTGCATATCGTTCAATGTGAGCATTCAATTCGTGAACATTCTTCAGATATTCAACGTCATCTGCATCCCCATAAGACAGGACCTGGAATGATAAAATATTCAGAGAATAAGCACAAAACCATACTTCGAACGGTTGCATTTGATTATCCACACAAACAGATTGGATTTTCTCAACGTTTTGTGTATCGAACCTTATCGTCTGCTTCGTAGTATCCGAACACATAGATGGGAGGCGAACAATGGGGACGGTGTGGTTGTCACCGAATACTAAAATCAAGAAATTTAGATCCGACGAGAATGCTTTTTCAATTACCAGGCAACTGTGTGAATGCTTTTCTCGTCTCCTCAAAATCATCGTCATCATCTGAATCCCTGTCTTGTAAATGTCTTCGCATATCTCTCATTTCTAGCTCATCTTCAGCATCATTGATAATTTTCAGAGGCATAGCRCAGTTGGATCGAGCCAGAACTAAAACACGCCGAGCCTCCACATAGGCACCTGCCAATTCAACACATTGCGACCAACGAGCATACAGTGCTGCGCATCTGTAAATTTCGAAGACTATTTATCAATTTGGATTACGAAATCCGACTTAATCAGGGACTGTCGACTGATAGCGAACTGATAAATGTCGTGTGCATGACCAGCACTGTTATCAGCCATTATCTCCCATATTTTCAGCATTCTCTCGTCTTCCTTGTACTGTTCCAGAAATCCTGGTCTAAAAATCTTCAGATACAGTTGTTCAAACGATAAAATTCACACCTGCTGATTACTTTCCAAAGCAATTCATAGTACAGTTTATGAGATCCGATTGCAAGTTTCTCTTCAAACCACGAACAGAACTCGAGAATCATCTGAATTTCGTCTTTTTCGGTCGAATCGCCCGCTTCTTGAAGTTCCTTGAAAAGGTTGTCAAGCTTTTCTCGTGCAGTAGCTTCCGTAACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 407 93</canonical_bands>
                <polymorphic_bands>593 407</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTCGCATATCTCTCATTTCTA</pcr_primer_p1>
		<pcr_primer_p2>GACATTTATCAGTTCGCTATCAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTTCGCATATCTCTCATTTCTAGCTCATCTTCAGCATCATTGATAATTTTCAGAGGCATAGCGCAGTTGGATCGAGCCAGAACTAAAACACGCCGAGCCTCCACATAGGCACCTGCCAATTCAACACATTGCGACCAACGAGCATACAGTGCTGCGCATCTGTAAATTTCGAAGACTATTTATCAATTTGGATTACGAAATCCGACTTAATCAGGGACTGTCGACTGATAGCGAACTGATAAATGTC</canonical_amplicon>
		<polymorphic_amplicon>TCTTCGCATATCTCTCATTTCTAGCTCATCTTCAGCATCATTGATAATTTTCAGAGGCATAGCRCAGTTGGATCGAGCCAGAACTAAAACACGCCGAGCCTCCACATAGGCACCTGCCAATTCAACACATTGCGACCAACGAGCATACAGTGCTGCGCATCTGTAAATTTCGAAGACTATTTATCAATTTGGATTACGAAATCCGACTTAATCAGGGACTGTCGACTGATAGCGAACTGATAAATGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7162</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>45753</contig_pos>
        <strand>+</strand>
        <context>GCTGATGGTA[A/T]AGAGAGAGCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCAGAATTCAAAGCCAAGAATACAGGAGGTTGAATCGATGCTGATGGTA</left_flank>
        <right_flank>AGAGAGAGCCGCTTCTCCAGCAGGAGCCGAACTTCTAGAGAATCCAGAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAACTTCGCAGGAGCTACCAGTTTTTGTTCCGATTCATTGTTAAATCGATTTGTAGAATAAACAGGAGCTAGGCAGCCTTTTGGGTCACATGCCTTCTTCCTGACACCAGAGTTACCCCACCGAGCATCAAAATCTCTCACAAGATACGCAATGTTCTCGCATATTGCCTTTTGCTTATTCACCGAAATAAGGAGAGATTTGAAGTAAAAGTACAGACGTAAAGCTAATTCGTCAATTGAATAGCTATGAGAATTTGGGGAAGAAGAGATTGAACTTCGGCTACTTCCAGCAACTGAGTGACAGCACGAAGAGATTCCAGTAGAAACGCTGGAGGTTGCAGGTAATAAAGATGTTAGCGAATCACATCTTGATTTAGCTGGGCATGTGAGTCTTTTCAGCTTTCGATTTGATCGTCGCACACGGGCTCTGGGTTTTCTGGGAAACATTCCAGAATTCAAAGCCAAGAATACAGGAGGTTGAATCGATGCTGATGGTAAAGAGAGAGCCGCTTCTCCAGCAGGAGCCGAACTTCTAGAGAATCCAGAAGAAGACGTAGATAAAGTTTCTTCTTCGTCTGTCATGGATAGAGGCGATGATTTGTGTAGATCTACTGAATCTCCTTTTTTCAAAGAGTTATTAGTAGAACACCCGAAGAAACCAGAATCGACGGAACCCGTGGAGAGTGGCATGATTTACTGGCGACACAGCACACGCAGCTGAATAGGGTTTAGGCTCTAAAAATGTATCAATAATATAAATTTTGCAAAATGATAAAAGTAAGAGACGATGAGCATAGAAGAGAACAAAATCGAACTGATATTCGATAATCAGGGTGGAGTGGTCAATATGAAAGGAATGGACGTTAAAAGAAGGGGGCAAAAGATAGAGGAAATTGACGGGTCGGACCAAGAAAGTGTCAATTTTCACAGAAAAAGTGAAAGCTATGAAACTGATTGGATTATCGGTGGACGACATAACGACGCCAACAACACACTTC</canonical>
            <polymorphic>GGAAACTTCGCAGGAGCTACCAGTTTTTGTTCCGATTCATTGTTAAATCGATTTGTAGAATAAACAGGAGCTAGGCAGCCTTTTGGGTCACATGCCTTCTTCCTGACACCAGAGTTACCCCACCGAGCATCAAAATCTCTCACAAGATACGCAATGTTCTCGCATATTGCCTTTTGCTTATTCACCGAAATAAGGAGAGATTTGAAGTAAAAGTACAGACGTAAAGCTAATTCGTCAATTGAATAGCTATGAGAATTTGGGGAAGAAGAGATTGAACTTCGGCTACTTCCAGCAACTGAGTGACAGCACGAAGAGATTCCAGTAGAAACGCTGGAGGTTGCAGGTAATAAAGATGTTAGCGAATCACATCTTGATTTAGCTGGGCATGTGAGTCTTTTCAGCTTTCGATTTGATCGTCGCACACGGGCTCTGGGTTTTCTGGGAAACATTCCAGAATTCAAAGCCAAGAATACAGGAGGTTGAATCGATGCTGATGGTAWAGAGAGAGCCGCTTCTCCAGCAGGAGCCGAACTTCTAGAGAATCCAGAAGAAGACGTAGATAAAGTTTCTTCTTCGTCTGTCATGGATAGAGGCGATGATTTGTGTAGATCTACTGAATCTCCTTTTTTCAAAGAGTTATTAGTAGAACACCCGAAGAAACCAGAATCGACGGAACCCGTGGAGAGTGGCATGATTTACTGGCGACACAGCACACGCAGCTGAATAGGGTTTAGGCTCTAAAAATGTATCAATAATATAAATTTTGCAAAATGATAAAAGTAAGAGACGATGAGCATAGAAGAGAACAAAATCGAACTGATATTCGATAATCAGGGTGGAGTGGTCAATATGAAAGGAATGGACGTTAAAAGAAGGGGGCAAAAGATAGAGGAAATTGACGGGTCGGACCAAGAAAGTGTCAATTTTCACAGAAAAAGTGAAAGCTATGAAACTGATTGGATTATCGGTGGACGACATAACGACGCCAACAACACACTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTGCAGGTAATAAAGATGTTA</pcr_primer_p1>
		<pcr_primer_p2>TGACAGACGAAGAAGAAACTTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGTTGCAGGTAATAAAGATGTTAGCGAATCACATCTTGATTTAGCTGGGCATGTGAGTCTTTTCAGCTTTCGATTTGATCGTCGCACACGGGCTCTGGGTTTTCTGGGAAACATTCCAGAATTCAAAGCCAAGAATACAGGAGGTTGAATCGATGCTGATGGTAAAGAGAGAGCCGCTTCTCCAGCAGGAGCCGAACTTCTAGAGAATCCAGAAGAAGACGTAGATAAAGTTTCTTCTTCGTCTGTCA</canonical_amplicon>
		<polymorphic_amplicon>GGTTGCAGGTAATAAAGATGTTAGCGAATCACATCTTGATTTAGCTGGGCATGTGAGTCTTTTCAGCTTTCGATTTGATCGTCGCACACGGGCTCTGGGTTTTCTGGGAAACATTCCAGAATTCAAAGCCAAGAATACAGGAGGTTGAATCGATGCTGATGGTAWAGAGAGAGCCGCTTCTCCAGCAGGAGCCGAACTTCTAGAGAATCCAGAAGAAGACGTAGATAAAGTTTCTTCTTCGTCTGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7163</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>45487</contig_pos>
        <strand>+</strand>
        <context>AAGCTAATTC[A/G]TCAATTGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCGAAATAAGGAGAGATTTGAAGTAAAAGTACAGACGTAAAGCTAATTC</left_flank>
        <right_flank>TCAATTGAATAGCTATGAGAATTTGGGGAAGAAGAGATTGAACTTCGGCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATATTGGAGTGCTTTTAAGGCCTCCATTGAAGCAGAAGCTTCTCGCTCGTTTTGGATCGGTAGTCCCGACGGCTGGTGTTGAGATTTCATTTGTGGAGATACGCTGAAAAAAGGCCAAGTTAGAAACTGATGAAATGAACCGATGGAGTCAACATTTTACAAATGTGAAAAATGTTCTAACCGTTCGAGAAACTTGATATACTCCAGTACATCATTAGCCATCAACTGATAGAAAATCGCAGGTTGAGGGACGGCCCAACACAAGGGAAACTTCGCAGGAGCTACCAGTTTTTGTTCCGATTCATTGTTAAATCGATTTGTAGAATAAACAGGAGCTAGGCAGCCTTTTGGGTCACATGCCTTCTTCCTGACACCAGAGTTACCCCACCGAGCATCAAAATCTCTCACAAGATACGCAATGTTCTCGCATATTGCCTTTTGCTTATTCACCGAAATAAGGAGAGATTTGAAGTAAAAGTACAGACGTAAAGCTAATTCGTCAATTGAATAGCTATGAGAATTTGGGGAAGAAGAGATTGAACTTCGGCTACTTCCAGCAACTGAGTGACAGCACGAAGAGATTCCAGTAGAAACGCTGGAGGTTGCAGGTAATAAAGATGTTAGCGAATCACATCTTGATTTAGCTGGGCATGTGAGTCTTTTCAGCTTTCGATTTGATCGTCGCACACGGGCTCTGGGTTTTCTGGGAAACATTCCAGAATTCAAAGCCAAGAATACAGGAGGTTGAATCGATGCTGATGGTAAAGAGAGAGCCGCTTCTCCAGCAGGAGCCGAACTTCTAGAGAATCCAGAAGAAGACGTAGATAAAGTTTCTTCTTCGTCTGTCATGGATAGAGGCGATGATTTGTGTAGATCTACTGAATCTCCTTTTTTCAAAGAGTTATTAGTAGAACACCCGAAGAAACCAGAATCGACGGAACCCGTGGAGAGTGGCATGATTTACTGGCGACACAGCACACGCAGCTGAATAGGGTTTAG</canonical>
            <polymorphic>GATATTGGAGTGCTTTTAAGGCCTCCATTGAAGCAGAAGCTTCTCGCTCGTTTTGGATCGGTAGTCCCGACGGCTGGTGTTGAGATTTCATTTGTGGAGATACGCTGAAAAAAGGCCAAGTTAGAAACTGATGAAATGAACCGATGGAGTCAACATTTTACAAATGTGAAAAATGTTCTAACCGTTCGAGAAACTTGATATACTCCAGTACATCATTAGCCATCAACTGATAGAAAATCGCAGGTTGAGGGACGGCCCAACACAAGGGAAACTTCGCAGGAGCTACCAGTTTTTGTTCCGATTCATTGTTAAATCGATTTGTAGAATAAACAGGAGCTAGGCAGCCTTTTGGGTCACATGCCTTCTTCCTGACACCAGAGTTACCCCACCGAGCATCAAAATCTCTCACAAGATACGCAATGTTCTCGCATATTGCCTTTTGCTTATTCACCGAAATAAGGAGAGATTTGAAGTAAAAGTACAGACGTAAAGCTAATTCRTCAATTGAATAGCTATGAGAATTTGGGGAAGAAGAGATTGAACTTCGGCTACTTCCAGCAACTGAGTGACAGCACGAAGAGATTCCAGTAGAAACGCTGGAGGTTGCAGGTAATAAAGATGTTAGCGAATCACATCTTGATTTAGCTGGGCATGTGAGTCTTTTCAGCTTTCGATTTGATCGTCGCACACGGGCTCTGGGTTTTCTGGGAAACATTCCAGAATTCAAAGCCAAGAATACAGGAGGTTGAATCGATGCTGATGGTAAAGAGAGAGCCGCTTCTCCAGCAGGAGCCGAACTTCTAGAGAATCCAGAAGAAGACGTAGATAAAGTTTCTTCTTCGTCTGTCATGGATAGAGGCGATGATTTGTGTAGATCTACTGAATCTCCTTTTTTCAAAGAGTTATTAGTAGAACACCCGAAGAAACCAGAATCGACGGAACCCGTGGAGAGTGGCATGATTTACTGGCGACACAGCACACGCAGCTGAATAGGGTTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAAAATCTCTCACAAGATACG</pcr_primer_p1>
		<pcr_primer_p2>AATCAAGATGTGATTCGCTAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATCAAAATCTCTCACAAGATACGCAATGTTCTCGCATATTGCCTTTTGCTTATTCACCGAAATAAGGAGAGATTTGAAGTAAAAGTACAGACGTAAAGCTAATTCGTCAATTGAATAGCTATGAGAATTTGGGGAAGAAGAGATTGAACTTCGGCTACTTCCAGCAACTGAGTGACAGCACGAAGAGATTCCAGTAGAAACGCTGGAGGTTGCAGGTAATAAAGATGTTAGCGAATCACATCTTGATT</canonical_amplicon>
		<polymorphic_amplicon>ATCAAAATCTCTCACAAGATACGCAATGTTCTCGCATATTGCCTTTTGCTTATTCACCGAAATAAGGAGAGATTTGAAGTAAAAGTACAGACGTAAAGCTAATTCRTCAATTGAATAGCTATGAGAATTTGGGGAAGAAGAGATTGAACTTCGGCTACTTCCAGCAACTGAGTGACAGCACGAAGAGATTCCAGTAGAAACGCTGGAGGTTGCAGGTAATAAAGATGTTAGCGAATCACATCTTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7164</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>89410</contig_pos>
        <strand>+</strand>
        <context>TCCAGAAAAA[A/T]AATACAACTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTTTTGGGTTTTCATTTCTTTATGAATCGATTAAAGCTTTCCAGAAAAA</left_flank>
        <right_flank>AATACAACTTTCCAGAAAAATAATGTATCAGAAAGATGATGAAACTTTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATATCTCGGTTTGAAAATCTTCCAGACTTGCTGTAGAAAGTGTATCAGAGACAAAAGGGAAAAGGAAGAGAAAAGTGATAAAATATGCAGTGAATATGACACATGCATGTGTCTGCTTTTCCCTATGTCTCTAGTCCCTCTTCATTTCATATGATCCCTCGATAGCTGATTCTTTGACTGTAACGCCAACAAAACACCCAGACCATATGTTACTGTTGAGGAGAGAAAAGGAACAGATAGTAGAGTTTTTGGTTAGTAGTAACAGTTTTGAATAGAGAAAAAGGAGAGAAAGGAACCTGTTAGATTCGAATAGGGGAGAAAAAATTTAGAGAATCACAAAAAGGATCGGGAAAAAAAGAAAGAGGGCAACAAAGGAATATCAAGAATATGTTGCAAGATTGGGGAAGAGATACCTAGAAAGGCTTTCGACAAAAATATAAAAATGTCGGTTTTTGGGTTTTCATTTCTTTATGAATCGATTAAAGCTTTCCAGAAAAATAATACAACTTTCCAGAAAAATAATGTATCAGAAAGATGATGAAACTTTCGAAATCGGACAATTTCAATTTCGAAATTATTAGATTTGGGCAAAATTTTAGTTTAAAAATAGAAAATTCCTGAAACGCTAAACTCAGAAATTGAAGACAAAACGAAAAATGCTAAAAATGCTAAAAATTTAGAAGACGTCGTCCTGAAATTTAGATAACGTCATCGTCGGAAGACGTCACATCTTCTGAATCCACATCTTATGAAAAACTAGATCACCGTAGCCTAGAAATGAAACGACGGCCTAGAATTCCAAAAGTCAGACTGTGACCTAGAAAACTCAAAACGCTGTATTTCTAGGCCACCGAACTCAAATATCACAAAAATCCAAATCGAAGAGTTATGGAATTCTTGGCCACCATAATGAAAGAATTAATGATGGTTGTGGGGTATGGTGACCGAGAAATTTAACTGATGGCTTAGTATTTCAAAAAATTTCAAGTAGACATCCTT</canonical>
            <polymorphic>GATATCTCGGTTTGAAAATCTTCCAGACTTGCTGTAGAAAGTGTATCAGAGACAAAAGGGAAAAGGAAGAGAAAAGTGATAAAATATGCAGTGAATATGACACATGCATGTGTCTGCTTTTCCCTATGTCTCTAGTCCCTCTTCATTTCATATGATCCCTCGATAGCTGATTCTTTGACTGTAACGCCAACAAAACACCCAGACCATATGTTACTGTTGAGGAGAGAAAAGGAACAGATAGTAGAGTTTTTGGTTAGTAGTAACAGTTTTGAATAGAGAAAAAGGAGAGAAAGGAACCTGTTAGATTCGAATAGGGGAGAAAAAATTTAGAGAATCACAAAAAGGATCGGGAAAAAAAGAAAGAGGGCAACAAAGGAATATCAAGAATATGTTGCAAGATTGGGGAAGAGATACCTAGAAAGGCTTTCGACAAAAATATAAAAATGTCGGTTTTTGGGTTTTCATTTCTTTATGAATCGATTAAAGCTTTCCAGAAAAAWAATACAACTTTCCAGAAAAATAATGTATCAGAAAGATGATGAAACTTTCGAAATCGGACAATTTCAATTTCGAAATTATTAGATTTGGGCAAAATTTTAGTTTAAAAATAGAAAATTCCTGAAACGCTAAACTCAGAAATTGAAGACAAAACGAAAAATGCTAAAAATGCTAAAAATTTAGAAGACGTCGTCCTGAAATTTAGATAACGTCATCGTCGGAAGACGTCACATCTTCTGAATCCACATCTTATGAAAAACTAGATCACCGTAGCCTAGAAATGAAACGACGGCCTAGAATTCCAAAAGTCAGACTGTGACCTAGAAAACTCAAAACGCTGTATTTCTAGGCCACCGAACTCAAATATCACAAAAATCCAAATCGAAGAGTTATGGAATTCTTGGCCACCATAATGAAAGAATTAATGATGGTTGTGGGGTATGGTGACCGAGAAATTTAACTGATGGCTTAGTATTTCAAAAAATTTCAAGTAGACATCCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAACAAAGGAATATCAAGAATA</pcr_primer_p1>
		<pcr_primer_p2>AAATTTTGCCCAAATCTAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>GCAACAAAGGAATATCAAGAATATGTTGCAAGATTGGGGAAGAGATACCTAGAAAGGCTTTCGACAAAAATATAAAAATGTCGGTTTTTGGGTTTTCATTTCTTTATGAATCGATTAAAGCTTTCCAGAAAAATAATACAACTTTCCAGAAAAATAATGTATCAGAAAGATGATGAAACTTTCGAAATCGGACAATTTCAATTTCGAAATTATTAGATTTGGGCAAAATTT</canonical_amplicon>
		<polymorphic_amplicon>GCAACAAAGGAATATCAAGAATATGTTGCAAGATTGGGGAAGAGATACCTAGAAAGGCTTTCGACAAAAATATAAAAATGTCGGTTTTTGGGTTTTCATTTCTTTATGAATCGATTAAAGCTTTCCAGAAAAAWAATACAACTTTCCAGAAAAATAATGTATCAGAAAGATGATGAAACTTTCGAAATCGGACAATTTCAATTTCGAAATTATTAGATTTGGGCAAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7165</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>89589</contig_pos>
        <strand></strand>
        <context>GCTAAAAATT[T/C]AGAAGACGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAACTCAGAAATTGAAGACAAAACGAAAAATGCTAAAAATGCTAAAAATT</left_flank>
        <right_flank>AGAAGACGTCGTCCTGAAATTTAGATAACGTCATCGTCGGAAGACGTCAC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTAACGCCAACAAAACACCCAGACCATATGTTACTGTTGAGGAGAGAAAAGGAACAGATAGTAGAGTTTTTGGTTAGTAGTAACAGTTTTGAATAGAGAAAAAGGAGAGAAAGGAACCTGTTAGATTCGAATAGGGGAGAAAAAATTTAGAGAATCACAAAAAGGATCGGGAAAAAAAGAAAGAGGGCAACAAAGGAATATCAAGAATATGTTGCAAGATTGGGGAAGAGATACCTAGAAAGGCTTTCGACAAAAATATAAAAATGTCGGTTTTTGGGTTTTCATTTCTTTATGAATCGATTAAAGCTTTCCAGAAAAATAATACAACTTTCCAGAAAAATAATGTATCAGAAAGATGATGAAACTTTCGAAATCGGACAATTTCAATTTCGAAATTATTAGATTTGGGCAAAATTTTAGTTTAAAAATAGAAAATTCCTGAAACGCTAAACTCAGAAATTGAAGACAAAACGAAAAATGCTAAAAATGCTAAAAATTTAGAAGACGTCGTCCTGAAATTTAGATAACGTCATCGTCGGAAGACGTCACATCTTCTGAATCCACATCTTATGAAAAACTAGATCACCGTAGCCTAGAAATGAAACGACGGCCTAGAATTCCAAAAGTCAGACTGTGACCTAGAAAACTCAAAACGCTGTATTTCTAGGCCACCGAACTCAAATATCACAAAAATCCAAATCGAAGAGTTATGGAATTCTTGGCCACCATAATGAAAGAATTAATGATGGTTGTGGGGTATGGTGACCGAGAAATTTAACTGATGGCTTAGTATTTCAAAAAATTTCAAGTAGACATCCTTCAGTTTATATATTTTTTCTTATCTTTTCCTTATTTTTAATACTTTCTTATCTCAAAAAAATTGTTTCAATTTTTCCTGTGTGTGGGCTAGCACCTGATTTATGACGAAAGGTGAGCAAGAGAGATGATAAACAAGAACATCCATGAGTCATGATGTCCAAGAAGTTCCATTGGCTCGAG</canonical>
            <polymorphic>TGTAACGCCAACAAAACACCCAGACCATATGTTACTGTTGAGGAGAGAAAAGGAACAGATAGTAGAGTTTTTGGTTAGTAGTAACAGTTTTGAATAGAGAAAAAGGAGAGAAAGGAACCTGTTAGATTCGAATAGGGGAGAAAAAATTTAGAGAATCACAAAAAGGATCGGGAAAAAAAGAAAGAGGGCAACAAAGGAATATCAAGAATATGTTGCAAGATTGGGGAAGAGATACCTAGAAAGGCTTTCGACAAAAATATAAAAATGTCGGTTTTTGGGTTTTCATTTCTTTATGAATCGATTAAAGCTTTCCAGAAAAATAATACAACTTTCCAGAAAAATAATGTATCAGAAAGATGATGAAACTTTCGAAATCGGACAATTTCAATTTCGAAATTATTAGATTTGGGCAAAATTTTAGTTTAAAAATAGAAAATTCCTGAAACGCTAAACTCAGAAATTGAAGACAAAACGAAAAATGCTAAAAATGCTAAAAATTYAGAAGACGTCGTCCTGAAATTTAGATAACGTCATCGTCGGAAGACGTCACATCTTCTGAATCCACATCTTATGAAAAACTAGATCACCGTAGCCTAGAAATGAAACGACGGCCTAGAATTCCAAAAGTCAGACTGTGACCTAGAAAACTCAAAACGCTGTATTTCTAGGCCACCGAACTCAAATATCACAAAAATCCAAATCGAAGAGTTATGGAATTCTTGGCCACCATAATGAAAGAATTAATGATGGTTGTGGGGTATGGTGACCGAGAAATTTAACTGATGGCTTAGTATTTCAAAAAATTTCAAGTAGACATCCTTCAGTTTATATATTTTTTCTTATCTTTTCCTTATTTTTAATACTTTCTTATCTCAAAAAAATTGTTTCAATTTTTCCTGTGTGTGGGCTAGCACCTGATTTATGACGAAAGGTGAGCAAGAGAGATGATAAACAAGAACATCCATGAGTCATGATGTCCAAGAAGTTCCATTGGCTCGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>269 199 144 99 98 61 58 29 22 21</canonical_bands>
                <polymorphic_bands>269 199 144 99 98 83 58 29 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTGGGCAAAATTTTAGTTTA</pcr_primer_p1>
		<pcr_primer_p2>TTTGAGTTTTCTAGGTCACAGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTGGGCAAAATTTTAGTTTAAAAATAGAAAATTCCTGAAACGCTAAACTCAGAAATTGAAGACAAAACGAAAAATGCTAAAAATGCTAAAAATTTAGAAGACGTCGTCCTGAAATTTAGATAACGTCATCGTCGGAAGACGTCACATCTTCTGAATCCACATCTTATGAAAAACTAGATCACCGTAGCCTAGAAATGAAACGACGGCCTAGAATTCCAAAAGTCAGACTGTGACCTAGAAAACTCAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTGGGCAAAATTTTAGTTTAAAAATAGAAAATTCCTGAAACGCTAAACTCAGAAATTGAAGACAAAACGAAAAATGCTAAAAATGCTAAAAATTYAGAAGACGTCGTCCTGAAATTTAGATAACGTCATCGTCGGAAGACGTCACATCTTCTGAATCCACATCTTATGAAAAACTAGATCACCGTAGCCTAGAAATGAAACGACGGCCTAGAATTCCAAAAGTCAGACTGTGACCTAGAAAACTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7166</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>104208</contig_pos>
        <strand>+</strand>
        <context>GACAAATTAT[C/G]GGTCTTTCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGTTTATATAAACAAATGATGGCTCTTCTTCTCCAAAGGAGACAAATTAT</left_flank>
        <right_flank>GGTCTTTCAGGTCTATGACTATCCTTGCTCAACATCTGAATTCACCGATT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTAGTTGTGGAAGAGAAACGCTGGTGGCCGTACCCGAAGCTCCCACAGCAACAACTACTGTAAACGAAGAGTAGTTTTATTTTCCGAATTTGTTTTTCCGATTATCGGATTTCTAAACCAGTTTCTCTTTATTAAAATTTTGACTTTGCGACTTTTCTGTGGGGAATTGACAGAAAACTCGGAAAAAATCAGTGAGAAACGAGAAAAACCCCTGAAAAAATTTTTAGGTTACGATAGCTGCCGTTGTGGGACAATCGGCTCTTGAGTTCTCAGCAAGATTAATCTGAATGCATTTCATTTTATTCATCATAACTATTCCCATCCTTTGATCACTTTTTTTGCTAACTCATTTGCTTTGCAATTCGATTCGTAGTATCATAATTCTCTCCTACTTCTAACATGGGAACGCCACTCGGAACGAAATTGAAGACGCCACATTTTGGCGCAGAGTTTATATAAACAAATGATGGCTCTTCTTCTCCAAAGGAGACAAATTATGGGTCTTTCAGGTCTATGACTATCCTTGCTCAACATCTGAATTCACCGATTCGAATCGATCTTCGTTGAATAGTGAAATCAAGAATGGTTTGATTGGAGACGACTGTGGATCTTCCATTTCTGATCATTTAGTGTCCTCGAGTGAGTCATCGATTGATATGATTTTTGATTGAGTTCTAAACTTTAGCTACTTCAATTCCTCTGCCTCCCCTGACTGGACCAGATCATTCTCCAGTCTATCCAACTGCCGCTGCCTATTTCGGATATGGATCGCCGGATTTCCCAATGCAATGGGCCTCGCCAGCGTGCGTTTTCATATTTCAGAATATAAAATATCGTTCTATTTTTAGGTATGACTGGCCTTACTATGCCAGTCCTCAAATTGGATTGTGCTCTTCTGAATTCAATGGAATCAGTCCATCACCAACAATCACCCCTCAAATAACTCCACAAGTGTCCCCATACTTCTATCCACCAGTCATCAACTCTTCCAACTTCATG</canonical>
            <polymorphic>TGTAGTTGTGGAAGAGAAACGCTGGTGGCCGTACCCGAAGCTCCCACAGCAACAACTACTGTAAACGAAGAGTAGTTTTATTTTCCGAATTTGTTTTTCCGATTATCGGATTTCTAAACCAGTTTCTCTTTATTAAAATTTTGACTTTGCGACTTTTCTGTGGGGAATTGACAGAAAACTCGGAAAAAATCAGTGAGAAACGAGAAAAACCCCTGAAAAAATTTTTAGGTTACGATAGCTGCCGTTGTGGGACAATCGGCTCTTGAGTTCTCAGCAAGATTAATCTGAATGCATTTCATTTTATTCATCATAACTATTCCCATCCTTTGATCACTTTTTTTGCTAACTCATTTGCTTTGCAATTCGATTCGTAGTATCATAATTCTCTCCTACTTCTAACATGGGAACGCCACTCGGAACGAAATTGAAGACGCCACATTTTGGCGCAGAGTTTATATAAACAAATGATGGCTCTTCTTCTCCAAAGGAGACAAATTATSGGTCTTTCAGGTCTATGACTATCCTTGCTCAACATCTGAATTCACCGATTCGAATCGATCTTCGTTGAATAGTGAAATCAAGAATGGTTTGATTGGAGACGACTGTGGATCTTCCATTTCTGATCATTTAGTGTCCTCGAGTGAGTCATCGATTGATATGATTTTTGATTGAGTTCTAAACTTTAGCTACTTCAATTCCTCTGCCTCCCCTGACTGGACCAGATCATTCTCCAGTCTATCCAACTGCCGCTGCCTATTTCGGATATGGATCGCCGGATTTCCCAATGCAATGGGCCTCGCCAGCGTGCGTTTTCATATTTCAGAATATAAAATATCGTTCTATTTTTAGGTATGACTGGCCTTACTATGCCAGTCCTCAAATTGGATTGTGCTCTTCTGAATTCAATGGAATCAGTCCATCACCAACAATCACCCCTCAAATAACTCCACAAGTGTCCCCATACTTCTATCCACCAGTCATCAACTCTTCCAACTTCATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCTACTTCTAACATGGGAAC</pcr_primer_p1>
		<pcr_primer_p2>AGGACACTAAATGATCAGAAATG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTCCTACTTCTAACATGGGAACGCCACTCGGAACGAAATTGAAGACGCCACATTTTGGCGCAGAGTTTATATAAACAAATGATGGCTCTTCTTCTCCAAAGGAGACAAATTATGGGTCTTTCAGGTCTATGACTATCCTTGCTCAACATCTGAATTCACCGATTCGAATCGATCTTCGTTGAATAGTGAAATCAAGAATGGTTTGATTGGAGACGACTGTGGATCTTCCATTTCTGATCATTTAGTGTCCT</canonical_amplicon>
		<polymorphic_amplicon>CTCCTACTTCTAACATGGGAACGCCACTCGGAACGAAATTGAAGACGCCACATTTTGGCGCAGAGTTTATATAAACAAATGATGGCTCTTCTTCTCCAAAGGAGACAAATTATSGGTCTTTCAGGTCTATGACTATCCTTGCTCAACATCTGAATTCACCGATTCGAATCGATCTTCGTTGAATAGTGAAATCAAGAATGGTTTGATTGGAGACGACTGTGGATCTTCCATTTCTGATCATTTAGTGTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7167</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>104511</contig_pos>
        <strand>+</strand>
        <context>GGCCTCGCCA[A/G]CGTGCGTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTATTTCGGATATGGATCGCCGGATTTCCCAATGCAATGGGCCTCGCCA</left_flank>
        <right_flank>CGTGCGTTTTCATATTTCAGAATATAAAATATCGTTCTATTTTTAGGTAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCATCATAACTATTCCCATCCTTTGATCACTTTTTTTGCTAACTCATTTGCTTTGCAATTCGATTCGTAGTATCATAATTCTCTCCTACTTCTAACATGGGAACGCCACTCGGAACGAAATTGAAGACGCCACATTTTGGCGCAGAGTTTATATAAACAAATGATGGCTCTTCTTCTCCAAAGGAGACAAATTATGGGTCTTTCAGGTCTATGACTATCCTTGCTCAACATCTGAATTCACCGATTCGAATCGATCTTCGTTGAATAGTGAAATCAAGAATGGTTTGATTGGAGACGACTGTGGATCTTCCATTTCTGATCATTTAGTGTCCTCGAGTGAGTCATCGATTGATATGATTTTTGATTGAGTTCTAAACTTTAGCTACTTCAATTCCTCTGCCTCCCCTGACTGGACCAGATCATTCTCCAGTCTATCCAACTGCCGCTGCCTATTTCGGATATGGATCGCCGGATTTCCCAATGCAATGGGCCTCGCCAGCGTGCGTTTTCATATTTCAGAATATAAAATATCGTTCTATTTTTAGGTATGACTGGCCTTACTATGCCAGTCCTCAAATTGGATTGTGCTCTTCTGAATTCAATGGAATCAGTCCATCACCAACAATCACCCCTCAAATAACTCCACAAGTGTCCCCATACTTCTATCCACCAGTCATCAACTCTTCCAACTTCATGGACGACTGGCGCTTCGGAGTTTCTTCGACTGCCATGACTTCGGGATCCTATGCGAGTCCCTCTTTTCTATCCAACGAGCCACCTGCCATCGATGTAGGCACGAAGCATGAAACTGGTGACCTCTGAGCAATTCCAATTATTAGTCGGCGTGCTTCTTTAAACCTGAGTGCCTTATCTTTCTTAAATAAAGTGATTAATGGACAATGTATGTGGAGAGTATACATTATAAATATTTATAAGGAAAACAGCTTCAGTGATTTGGGACGAACAGATTGTTGTATGGGGAAGCGAGTCAAAGTGCCT</canonical>
            <polymorphic>TTCATCATAACTATTCCCATCCTTTGATCACTTTTTTTGCTAACTCATTTGCTTTGCAATTCGATTCGTAGTATCATAATTCTCTCCTACTTCTAACATGGGAACGCCACTCGGAACGAAATTGAAGACGCCACATTTTGGCGCAGAGTTTATATAAACAAATGATGGCTCTTCTTCTCCAAAGGAGACAAATTATGGGTCTTTCAGGTCTATGACTATCCTTGCTCAACATCTGAATTCACCGATTCGAATCGATCTTCGTTGAATAGTGAAATCAAGAATGGTTTGATTGGAGACGACTGTGGATCTTCCATTTCTGATCATTTAGTGTCCTCGAGTGAGTCATCGATTGATATGATTTTTGATTGAGTTCTAAACTTTAGCTACTTCAATTCCTCTGCCTCCCCTGACTGGACCAGATCATTCTCCAGTCTATCCAACTGCCGCTGCCTATTTCGGATATGGATCGCCGGATTTCCCAATGCAATGGGCCTCGCCARCGTGCGTTTTCATATTTCAGAATATAAAATATCGTTCTATTTTTAGGTATGACTGGCCTTACTATGCCAGTCCTCAAATTGGATTGTGCTCTTCTGAATTCAATGGAATCAGTCCATCACCAACAATCACCCCTCAAATAACTCCACAAGTGTCCCCATACTTCTATCCACCAGTCATCAACTCTTCCAACTTCATGGACGACTGGCGCTTCGGAGTTTCTTCGACTGCCATGACTTCGGGATCCTATGCGAGTCCCTCTTTTCTATCCAACGAGCCACCTGCCATCGATGTAGGCACGAAGCATGAAACTGGTGACCTCTGAGCAATTCCAATTATTAGTCGGCGTGCTTCTTTAAACCTGAGTGCCTTATCTTTCTTAAATAAAGTGATTAATGGACAATGTATGTGGAGAGTATACATTATAAATATTTATAAGGAAAACAGCTTCAGTGATTTGGGACGAACAGATTGTTGTATGGGGAAGCGAGTCAAAGTGCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 344 154 4</canonical_bands>
                <polymorphic_bands>846 154</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCATTTCTGATCATTTAGTGTC</pcr_primer_p1>
		<pcr_primer_p2>AGGCCAGTCATACCTAAAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCATTTCTGATCATTTAGTGTCCTCGAGTGAGTCATCGATTGATATGATTTTTGATTGAGTTCTAAACTTTAGCTACTTCAATTCCTCTGCCTCCCCTGACTGGACCAGATCATTCTCCAGTCTATCCAACTGCCGCTGCCTATTTCGGATATGGATCGCCGGATTTCCCAATGCAATGGGCCTCGCCAGCGTGCGTTTTCATATTTCAGAATATAAAATATCGTTCTATTTTTAGGTATGACTGGCCT</canonical_amplicon>
		<polymorphic_amplicon>TCCATTTCTGATCATTTAGTGTCCTCGAGTGAGTCATCGATTGATATGATTTTTGATTGAGTTCTAAACTTTAGCTACTTCAATTCCTCTGCCTCCCCTGACTGGACCAGATCATTCTCCAGTCTATCCAACTGCCGCTGCCTATTTCGGATATGGATCGCCGGATTTCCCAATGCAATGGGCCTCGCCARCGTGCGTTTTCATATTTCAGAATATAAAATATCGTTCTATTTTTAGGTATGACTGGCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7168</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>104525</contig_pos>
        <strand>+</strand>
        <context>GCGTTTTCAT[A/G]TTTCAGAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGATCGCCGGATTTCCCAATGCAATGGGCCTCGCCAGCGTGCGTTTTCAT</left_flank>
        <right_flank>TTTCAGAATATAAAATATCGTTCTATTTTTAGGTATGACTGGCCTTACTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCCATCCTTTGATCACTTTTTTTGCTAACTCATTTGCTTTGCAATTCGATTCGTAGTATCATAATTCTCTCCTACTTCTAACATGGGAACGCCACTCGGAACGAAATTGAAGACGCCACATTTTGGCGCAGAGTTTATATAAACAAATGATGGCTCTTCTTCTCCAAAGGAGACAAATTATGGGTCTTTCAGGTCTATGACTATCCTTGCTCAACATCTGAATTCACCGATTCGAATCGATCTTCGTTGAATAGTGAAATCAAGAATGGTTTGATTGGAGACGACTGTGGATCTTCCATTTCTGATCATTTAGTGTCCTCGAGTGAGTCATCGATTGATATGATTTTTGATTGAGTTCTAAACTTTAGCTACTTCAATTCCTCTGCCTCCCCTGACTGGACCAGATCATTCTCCAGTCTATCCAACTGCCGCTGCCTATTTCGGATATGGATCGCCGGATTTCCCAATGCAATGGGCCTCGCCAGCGTGCGTTTTCATATTTCAGAATATAAAATATCGTTCTATTTTTAGGTATGACTGGCCTTACTATGCCAGTCCTCAAATTGGATTGTGCTCTTCTGAATTCAATGGAATCAGTCCATCACCAACAATCACCCCTCAAATAACTCCACAAGTGTCCCCATACTTCTATCCACCAGTCATCAACTCTTCCAACTTCATGGACGACTGGCGCTTCGGAGTTTCTTCGACTGCCATGACTTCGGGATCCTATGCGAGTCCCTCTTTTCTATCCAACGAGCCACCTGCCATCGATGTAGGCACGAAGCATGAAACTGGTGACCTCTGAGCAATTCCAATTATTAGTCGGCGTGCTTCTTTAAACCTGAGTGCCTTATCTTTCTTAAATAAAGTGATTAATGGACAATGTATGTGGAGAGTATACATTATAAATATTTATAAGGAAAACAGCTTCAGTGATTTGGGACGAACAGATTGTTGTATGGGGAAGCGAGTCAAAGTGCCTAGCAATCTATACGC</canonical>
            <polymorphic>TCCCATCCTTTGATCACTTTTTTTGCTAACTCATTTGCTTTGCAATTCGATTCGTAGTATCATAATTCTCTCCTACTTCTAACATGGGAACGCCACTCGGAACGAAATTGAAGACGCCACATTTTGGCGCAGAGTTTATATAAACAAATGATGGCTCTTCTTCTCCAAAGGAGACAAATTATGGGTCTTTCAGGTCTATGACTATCCTTGCTCAACATCTGAATTCACCGATTCGAATCGATCTTCGTTGAATAGTGAAATCAAGAATGGTTTGATTGGAGACGACTGTGGATCTTCCATTTCTGATCATTTAGTGTCCTCGAGTGAGTCATCGATTGATATGATTTTTGATTGAGTTCTAAACTTTAGCTACTTCAATTCCTCTGCCTCCCCTGACTGGACCAGATCATTCTCCAGTCTATCCAACTGCCGCTGCCTATTTCGGATATGGATCGCCGGATTTCCCAATGCAATGGGCCTCGCCAGCGTGCGTTTTCATRTTTCAGAATATAAAATATCGTTCTATTTTTAGGTATGACTGGCCTTACTATGCCAGTCCTCAAATTGGATTGTGCTCTTCTGAATTCAATGGAATCAGTCCATCACCAACAATCACCCCTCAAATAACTCCACAAGTGTCCCCATACTTCTATCCACCAGTCATCAACTCTTCCAACTTCATGGACGACTGGCGCTTCGGAGTTTCTTCGACTGCCATGACTTCGGGATCCTATGCGAGTCCCTCTTTTCTATCCAACGAGCCACCTGCCATCGATGTAGGCACGAAGCATGAAACTGGTGACCTCTGAGCAATTCCAATTATTAGTCGGCGTGCTTCTTTAAACCTGAGTGCCTTATCTTTCTTAAATAAAGTGATTAATGGACAATGTATGTGGAGAGTATACATTATAAATATTTATAAGGAAAACAGCTTCAGTGATTTGGGACGAACAGATTGTTGTATGGGGAAGCGAGTCAAAGTGCCTAGCAATCTATACGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGAGTCATCGATTGATATGAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTGAGGACTGGCATAGTAAG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AGTGAGTCATCGATTGATATGATTTTTGATTGAGTTCTAAACTTTAGCTACTTCAATTCCTCTGCCTCCCCTGACTGGACCAGATCATTCTCCAGTCTATCCAACTGCCGCTGCCTATTTCGGATATGGATCGCCGGATTTCCCAATGCAATGGGCCTCGCCAGCGTGCGTTTTCATATTTCAGAATATAAAATATCGTTCTATTTTTAGGTATGACTGGCCTTACTATGCCAGTCCTCAAAT</canonical_amplicon>
		<polymorphic_amplicon>AGTGAGTCATCGATTGATATGATTTTTGATTGAGTTCTAAACTTTAGCTACTTCAATTCCTCTGCCTCCCCTGACTGGACCAGATCATTCTCCAGTCTATCCAACTGCCGCTGCCTATTTCGGATATGGATCGCCGGATTTCCCAATGCAATGGGCCTCGCCAGCGTGCGTTTTCATRTTTCAGAATATAAAATATCGTTCTATTTTTAGGTATGACTGGCCTTACTATGCCAGTCCTCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7169</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>107943</contig_pos>
        <strand>+</strand>
        <context>AAATCCAGCT[A/C]GAAATTAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCAGGAATAGGAAATACGTTGCTTGCTGCATTCAATCAAAAATCCAGCT</left_flank>
        <right_flank>GAAATTAAAGGCGCAGATAATTTTTTGATGATTTTGACCCGAATACCGTA</right_flank>
        <qual_score>134</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATACTCCGTGCAACACATTTTCCGGGTCAATAGTGAGTATTGACGTCATGAGGGAGAATATTAAAGTAGAACGTATAACAACAAAAATTCAAGACACTGGGAAGCATTACCTTGGGGCTGTCCGTTCCAATTACAGACGTTGGAACTTTGATCATCATGCTGAAGTAAATGTGCTGTAATTAAATTAATAAAATCATGTAACTGCTGGAAAGCAGATGAATAATAAGCGATAGAAAACATTTAGTTGCAAGCAAAAATACCTATTGGATAAAATAAATACAAATTTTTGTCAATATTCGAAATGTTGTCTATATCGTTCATCAGTTCATTCATATGGAATTATTCCTGACATAAAAATGGGGGGGGGGGGGTTTGCTTAAACGTATTCATGTGTGTCATGAACCATCCAATGAACTTTAAATTATAAAAAAATCACTCAAAAAAACCATTCAGGAATAGGAAATACGTTGCTTGCTGCATTCAATCAAAAATCCAGCTAGAAATTAAAGGCGCAGATAATTTTTTGATGATTTTGACCCGAATACCGTACTCAAAAAAACGCGGTCTTTCATATATAAAATCGTTTGTTCGCAGACAGTCAAAACAAAATCTTTGATGTTTCTTCTACAATATTATTGCTCAATTTTCTAAAAATAAAAAGAAAATAATGTTATGAATATCATCATAAATAAAAAAAATATTATACGATTATCCAAAAATATTATCATCATTCTTATAATAAATAAAAAGTTGCGTCTCTTTGTTTCTCTATCTGTCAGTCTGTCCGCGAATTTTGAAAAGCTTGAAATTGAATAAAATTTGACGTGACCTTTTAAGAAGATTGAGTCGCGAAGCGACGAAAAAATAATAAAAAAAGGTCAAATCGCGCCGGAGGCGCACCAGCCAGCTGTTTGAAGCGCCGGAGGCGCGGCAAACAGGCTGGCAATTACAAAAAATATAAAATTGCTGATGAATATGTGCCAATCGGTACTCGATAAT</canonical>
            <polymorphic>CATACTCCGTGCAACACATTTTCCGGGTCAATAGTGAGTATTGACGTCATGAGGGAGAATATTAAAGTAGAACGTATAACAACAAAAATTCAAGACACTGGGAAGCATTACCTTGGGGCTGTCCGTTCCAATTACAGACGTTGGAACTTTGATCATCATGCTGAAGTAAATGTGCTGTAATTAAATTAATAAAATCATGTAACTGCTGGAAAGCAGATGAATAATAAGCGATAGAAAACATTTAGTTGCAAGCAAAAATACCTATTGGATAAAATAAATACAAATTTTTGTCAATATTCGAAATGTTGTCTATATCGTTCATCAGTTCATTCATATGGAATTATTCCTGACATAAAAATGGGGGGGGGGGGGTTTGCTTAAACGTATTCATGTGTGTCATGAACCATCCAATGAACTTTAAATTATAAAAAAATCACTCAAAAAAACCATTCAGGAATAGGAAATACGTTGCTTGCTGCATTCAATCAAAAATCCAGCTMGAAATTAAAGGCGCAGATAATTTTTTGATGATTTTGACCCGAATACCGTACTCAAAAAAACGCGGTCTTTCATATATAAAATCGTTTGTTCGCAGACAGTCAAAACAAAATCTTTGATGTTTCTTCTACAATATTATTGCTCAATTTTCTAAAAATAAAAAGAAAATAATGTTATGAATATCATCATAAATAAAAAAAATATTATACGATTATCCAAAAATATTATCATCATTCTTATAATAAATAAAAAGTTGCGTCTCTTTGTTTCTCTATCTGTCAGTCTGTCCGCGAATTTTGAAAAGCTTGAAATTGAATAAAATTTGACGTGACCTTTTAAGAAGATTGAGTCGCGAAGCGACGAAAAAATAATAAAAAAAGGTCAAATCGCGCCGGAGGCGCACCAGCCAGCTGTTTGAAGCGCCGGAGGCGCGGCAAACAGGCTGGCAATTACAAAAAATATAAAATTGCTGATGAATATGTGCCAATCGGTACTCGATAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGCTTAAACGTATTCATGTG</pcr_primer_p1>
		<pcr_primer_p2>AACATCAAAGATTTTGTTTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTGCTTAAACGTATTCATGTGTGTCATGAACCATCCAATGAACTTTAAATTATAAAAAAATCACTCAAAAAAACCATTCAGGAATAGGAAATACGTTGCTTGCTGCATTCAATCAAAAATCCAGCTAGAAATTAAAGGCGCAGATAATTTTTTGATGATTTTGACCCGAATACCGTACTCAAAAAAACGCGGTCTTTCATATATAAAATCGTTTGTTCGCAGACAGTCAAAACAAAATCTTTGATGTT</canonical_amplicon>
		<polymorphic_amplicon>TTTGCTTAAACGTATTCATGTGTGTCATGAACCATCCAATGAACTTTAAATTATAAAAAAATCACTCAAAAAAACCATTCAGGAATAGGAAATACGTTGCTTGCTGCATTCAATCAAAAATCCAGCTMGAAATTAAAGGCGCAGATAATTTTTTGATGATTTTGACCCGAATACCGTACTCAAAAAAACGCGGTCTTTCATATATAAAATCGTTTGTTCGCAGACAGTCAAAACAAAATCTTTGATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7170</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>107982</contig_pos>
        <strand>+</strand>
        <context>TGATTTTGAC[A/C]CGAATACCGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAATCCAGCTAGAAATTAAAGGCGCAGATAATTTTTTGATGATTTTGAC</left_flank>
        <right_flank>CGAATACCGTACTCAAAAAAACGCGGTCTTTCATATATAAAATCGTTTGT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGACGTCATGAGGGAGAATATTAAAGTAGAACGTATAACAACAAAAATTCAAGACACTGGGAAGCATTACCTTGGGGCTGTCCGTTCCAATTACAGACGTTGGAACTTTGATCATCATGCTGAAGTAAATGTGCTGTAATTAAATTAATAAAATCATGTAACTGCTGGAAAGCAGATGAATAATAAGCGATAGAAAACATTTAGTTGCAAGCAAAAATACCTATTGGATAAAATAAATACAAATTTTTGTCAATATTCGAAATGTTGTCTATATCGTTCATCAGTTCATTCATATGGAATTATTCCTGACATAAAAATGGGGGGGGGGGGGTTTGCTTAAACGTATTCATGTGTGTCATGAACCATCCAATGAACTTTAAATTATAAAAAAATCACTCAAAAAAACCATTCAGGAATAGGAAATACGTTGCTTGCTGCATTCAATCAAAAATCCAGCTAGAAATTAAAGGCGCAGATAATTTTTTGATGATTTTGACCCGAATACCGTACTCAAAAAAACGCGGTCTTTCATATATAAAATCGTTTGTTCGCAGACAGTCAAAACAAAATCTTTGATGTTTCTTCTACAATATTATTGCTCAATTTTCTAAAAATAAAAAGAAAATAATGTTATGAATATCATCATAAATAAAAAAAATATTATACGATTATCCAAAAATATTATCATCATTCTTATAATAAATAAAAAGTTGCGTCTCTTTGTTTCTCTATCTGTCAGTCTGTCCGCGAATTTTGAAAAGCTTGAAATTGAATAAAATTTGACGTGACCTTTTAAGAAGATTGAGTCGCGAAGCGACGAAAAAATAATAAAAAAAGGTCAAATCGCGCCGGAGGCGCACCAGCCAGCTGTTTGAAGCGCCGGAGGCGCGGCAAACAGGCTGGCAATTACAAAAAATATAAAATTGCTGATGAATATGTGCCAATCGGTACTCGATAATATATTTTCCAAGTGTCTGTTTCAATTAGAGCTCCTCAAA</canonical>
            <polymorphic>ATTGACGTCATGAGGGAGAATATTAAAGTAGAACGTATAACAACAAAAATTCAAGACACTGGGAAGCATTACCTTGGGGCTGTCCGTTCCAATTACAGACGTTGGAACTTTGATCATCATGCTGAAGTAAATGTGCTGTAATTAAATTAATAAAATCATGTAACTGCTGGAAAGCAGATGAATAATAAGCGATAGAAAACATTTAGTTGCAAGCAAAAATACCTATTGGATAAAATAAATACAAATTTTTGTCAATATTCGAAATGTTGTCTATATCGTTCATCAGTTCATTCATATGGAATTATTCCTGACATAAAAATGGGGGGGGGGGGGTTTGCTTAAACGTATTCATGTGTGTCATGAACCATCCAATGAACTTTAAATTATAAAAAAATCACTCAAAAAAACCATTCAGGAATAGGAAATACGTTGCTTGCTGCATTCAATCAAAAATCCAGCTAGAAATTAAAGGCGCAGATAATTTTTTGATGATTTTGACMCGAATACCGTACTCAAAAAAACGCGGTCTTTCATATATAAAATCGTTTGTTCGCAGACAGTCAAAACAAAATCTTTGATGTTTCTTCTACAATATTATTGCTCAATTTTCTAAAAATAAAAAGAAAATAATGTTATGAATATCATCATAAATAAAAAAAATATTATACGATTATCCAAAAATATTATCATCATTCTTATAATAAATAAAAAGTTGCGTCTCTTTGTTTCTCTATCTGTCAGTCTGTCCGCGAATTTTGAAAAGCTTGAAATTGAATAAAATTTGACGTGACCTTTTAAGAAGATTGAGTCGCGAAGCGACGAAAAAATAATAAAAAAAGGTCAAATCGCGCCGGAGGCGCACCAGCCAGCTGTTTGAAGCGCCGGAGGCGCGGCAAACAGGCTGGCAATTACAAAAAATATAAAATTGCTGATGAATATGTGCCAATCGGTACTCGATAATATATTTTCCAAGTGTCTGTTTCAATTAGAGCTCCTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGCTTAAACGTATTCATGTG</pcr_primer_p1>
		<pcr_primer_p2>AACATCAAAGATTTTGTTTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTGCTTAAACGTATTCATGTGTGTCATGAACCATCCAATGAACTTTAAATTATAAAAAAATCACTCAAAAAAACCATTCAGGAATAGGAAATACGTTGCTTGCTGCATTCAATCAAAAATCCAGCTAGAAATTAAAGGCGCAGATAATTTTTTGATGATTTTGACCCGAATACCGTACTCAAAAAAACGCGGTCTTTCATATATAAAATCGTTTGTTCGCAGACAGTCAAAACAAAATCTTTGATGTT</canonical_amplicon>
		<polymorphic_amplicon>TTTGCTTAAACGTATTCATGTGTGTCATGAACCATCCAATGAACTTTAAATTATAAAAAAATCACTCAAAAAAACCATTCAGGAATAGGAAATACGTTGCTTGCTGCATTCAATCAAAAATCCAGCTAGAAATTAAAGGCGCAGATAATTTTTTGATGATTTTGACMCGAATACCGTACTCAAAAAAACGCGGTCTTTCATATATAAAATCGTTTGTTCGCAGACAGTCAAAACAAAATCTTTGATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7171</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>108016</contig_pos>
        <strand>+</strand>
        <context>CGGTCTTTCA[A/T]ATATAAAATC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTGATGATTTTGACCCGAATACCGTACTCAAAAAAACGCGGTCTTTCA</left_flank>
        <right_flank>ATATAAAATCGTTTGTTCGCAGACAGTCAAAACAAAATCTTTGATGTTTC</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATAACAACAAAAATTCAAGACACTGGGAAGCATTACCTTGGGGCTGTCCGTTCCAATTACAGACGTTGGAACTTTGATCATCATGCTGAAGTAAATGTGCTGTAATTAAATTAATAAAATCATGTAACTGCTGGAAAGCAGATGAATAATAAGCGATAGAAAACATTTAGTTGCAAGCAAAAATACCTATTGGATAAAATAAATACAAATTTTTGTCAATATTCGAAATGTTGTCTATATCGTTCATCAGTTCATTCATATGGAATTATTCCTGACATAAAAATGGGGGGGGGGGGGTTTGCTTAAACGTATTCATGTGTGTCATGAACCATCCAATGAACTTTAAATTATAAAAAAATCACTCAAAAAAACCATTCAGGAATAGGAAATACGTTGCTTGCTGCATTCAATCAAAAATCCAGCTAGAAATTAAAGGCGCAGATAATTTTTTGATGATTTTGACCCGAATACCGTACTCAAAAAAACGCGGTCTTTCATATATAAAATCGTTTGTTCGCAGACAGTCAAAACAAAATCTTTGATGTTTCTTCTACAATATTATTGCTCAATTTTCTAAAAATAAAAAGAAAATAATGTTATGAATATCATCATAAATAAAAAAAATATTATACGATTATCCAAAAATATTATCATCATTCTTATAATAAATAAAAAGTTGCGTCTCTTTGTTTCTCTATCTGTCAGTCTGTCCGCGAATTTTGAAAAGCTTGAAATTGAATAAAATTTGACGTGACCTTTTAAGAAGATTGAGTCGCGAAGCGACGAAAAAATAATAAAAAAAGGTCAAATCGCGCCGGAGGCGCACCAGCCAGCTGTTTGAAGCGCCGGAGGCGCGGCAAACAGGCTGGCAATTACAAAAAATATAAAATTGCTGATGAATATGTGCCAATCGGTACTCGATAATATATTTTCCAAGTGTCTGTTTCAATTAGAGCTCCTCAAAATAAAATTATATATTTTTTTTTGCTTAAAAAACG</canonical>
            <polymorphic>GTATAACAACAAAAATTCAAGACACTGGGAAGCATTACCTTGGGGCTGTCCGTTCCAATTACAGACGTTGGAACTTTGATCATCATGCTGAAGTAAATGTGCTGTAATTAAATTAATAAAATCATGTAACTGCTGGAAAGCAGATGAATAATAAGCGATAGAAAACATTTAGTTGCAAGCAAAAATACCTATTGGATAAAATAAATACAAATTTTTGTCAATATTCGAAATGTTGTCTATATCGTTCATCAGTTCATTCATATGGAATTATTCCTGACATAAAAATGGGGGGGGGGGGGTTTGCTTAAACGTATTCATGTGTGTCATGAACCATCCAATGAACTTTAAATTATAAAAAAATCACTCAAAAAAACCATTCAGGAATAGGAAATACGTTGCTTGCTGCATTCAATCAAAAATCCAGCTAGAAATTAAAGGCGCAGATAATTTTTTGATGATTTTGACCCGAATACCGTACTCAAAAAAACGCGGTCTTTCAWATATAAAATCGTTTGTTCGCAGACAGTCAAAACAAAATCTTTGATGTTTCTTCTACAATATTATTGCTCAATTTTCTAAAAATAAAAAGAAAATAATGTTATGAATATCATCATAAATAAAAAAAATATTATACGATTATCCAAAAATATTATCATCATTCTTATAATAAATAAAAAGTTGCGTCTCTTTGTTTCTCTATCTGTCAGTCTGTCCGCGAATTTTGAAAAGCTTGAAATTGAATAAAATTTGACGTGACCTTTTAAGAAGATTGAGTCGCGAAGCGACGAAAAAATAATAAAAAAAGGTCAAATCGCGCCGGAGGCGCACCAGCCAGCTGTTTGAAGCGCCGGAGGCGCGGCAAACAGGCTGGCAATTACAAAAAATATAAAATTGCTGATGAATATGTGCCAATCGGTACTCGATAATATATTTTCCAAGTGTCTGTTTCAATTAGAGCTCCTCAAAATAAAATTATATATTTTTTTTTGCTTAAAAAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAAAGGCGCAGATAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTACCGATTGGCACATATTC</pcr_primer_p2>
		<pcr_amplicon_size>488</pcr_amplicon_size>
		<canonical_amplicon>TTAAAGGCGCAGATAATTTTTTGATGATTTTGACCCGAATACCGTACTCAAAAAAACGCGGTCTTTCATATATAAAATCGTTTGTTCGCAGACAGTCAAAACAAAATCTTTGATGTTTCTTCTACAATATTATTGCTCAATTTTCTAAAAATAAAAAGAAAATAATGTTATGAATATCATCATAAATAAAAAAAATATTATACGATTATCCAAAAATATTATCATCATTCTTATAATAAATAAAAAGTTGCGTCTCTTTGTTTCTCTATCTGTCAGTCTGTCCGCGAATTTTGAAAAGCTTGAAATTGAATAAAATTTGACGTGACCTTTTAAGAAGATTGAGTCGCGAAGCGACGAAAAAATAATAAAAAAAGGTCAAATCGCGCCGGAGGCGCACCAGCCAGCTGTTTGAAGCGCCGGAGGCGCGGCAAACAGGCTGGCAATTACAAAAAATATAAAATTGCTGATGAATATGTGCCAATCGGTAC</canonical_amplicon>
		<polymorphic_amplicon>TTAAAGGCGCAGATAATTTTTTGATGATTTTGACCCGAATACCGTACTCAAAAAAACGCGGTCTTTCAWATATAAAATCGTTTGTTCGCAGACAGTCAAAACAAAATCTTTGATGTTTCTTCTACAATATTATTGCTCAATTTTCTAAAAATAAAAAGAAAATAATGTTATGAATATCATCATAAATAAAAAAAATATTATACGATTATCCAAAAATATTATCATCATTCTTATAATAAATAAAAAGTTGCGTCTCTTTGTTTCTCTATCTGTCAGTCTGTCCGCGAATTTTGAAAAGCTTGAAATTGAATAAAATTTGACGTGACCTTTTAAGAAGATTGAGTCGCGAAGCGACGAAAAAATAATAAAAAAAGGTCAAATCGCGCCGGAGGCGCACCAGCCAGCTGTTTGAAGCGCCGGAGGCGCGGCAAACAGGCTGGCAATTACAAAAAATATAAAATTGCTGATGAATATGTGCCAATCGGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7172</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>108036</contig_pos>
        <strand>+</strand>
        <context>CGTTTGTTCG[C/G]AGACAGTCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATACCGTACTCAAAAAAACGCGGTCTTTCATATATAAAATCGTTTGTTCG</left_flank>
        <right_flank>AGACAGTCAAAACAAAATCTTTGATGTTTCTTCTACAATATTATTGCTCA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACACTGGGAAGCATTACCTTGGGGCTGTCCGTTCCAATTACAGACGTTGGAACTTTGATCATCATGCTGAAGTAAATGTGCTGTAATTAAATTAATAAAATCATGTAACTGCTGGAAAGCAGATGAATAATAAGCGATAGAAAACATTTAGTTGCAAGCAAAAATACCTATTGGATAAAATAAATACAAATTTTTGTCAATATTCGAAATGTTGTCTATATCGTTCATCAGTTCATTCATATGGAATTATTCCTGACATAAAAATGGGGGGGGGGGGGTTTGCTTAAACGTATTCATGTGTGTCATGAACCATCCAATGAACTTTAAATTATAAAAAAATCACTCAAAAAAACCATTCAGGAATAGGAAATACGTTGCTTGCTGCATTCAATCAAAAATCCAGCTAGAAATTAAAGGCGCAGATAATTTTTTGATGATTTTGACCCGAATACCGTACTCAAAAAAACGCGGTCTTTCATATATAAAATCGTTTGTTCGCAGACAGTCAAAACAAAATCTTTGATGTTTCTTCTACAATATTATTGCTCAATTTTCTAAAAATAAAAAGAAAATAATGTTATGAATATCATCATAAATAAAAAAAATATTATACGATTATCCAAAAATATTATCATCATTCTTATAATAAATAAAAAGTTGCGTCTCTTTGTTTCTCTATCTGTCAGTCTGTCCGCGAATTTTGAAAAGCTTGAAATTGAATAAAATTTGACGTGACCTTTTAAGAAGATTGAGTCGCGAAGCGACGAAAAAATAATAAAAAAAGGTCAAATCGCGCCGGAGGCGCACCAGCCAGCTGTTTGAAGCGCCGGAGGCGCGGCAAACAGGCTGGCAATTACAAAAAATATAAAATTGCTGATGAATATGTGCCAATCGGTACTCGATAATATATTTTCCAAGTGTCTGTTTCAATTAGAGCTCCTCAAAATAAAATTATATATTTTTTTTTGCTTAAAAAACGAGAGATCGTTTTTTGGAAAT</canonical>
            <polymorphic>GACACTGGGAAGCATTACCTTGGGGCTGTCCGTTCCAATTACAGACGTTGGAACTTTGATCATCATGCTGAAGTAAATGTGCTGTAATTAAATTAATAAAATCATGTAACTGCTGGAAAGCAGATGAATAATAAGCGATAGAAAACATTTAGTTGCAAGCAAAAATACCTATTGGATAAAATAAATACAAATTTTTGTCAATATTCGAAATGTTGTCTATATCGTTCATCAGTTCATTCATATGGAATTATTCCTGACATAAAAATGGGGGGGGGGGGGTTTGCTTAAACGTATTCATGTGTGTCATGAACCATCCAATGAACTTTAAATTATAAAAAAATCACTCAAAAAAACCATTCAGGAATAGGAAATACGTTGCTTGCTGCATTCAATCAAAAATCCAGCTAGAAATTAAAGGCGCAGATAATTTTTTGATGATTTTGACCCGAATACCGTACTCAAAAAAACGCGGTCTTTCATATATAAAATCGTTTGTTCGSAGACAGTCAAAACAAAATCTTTGATGTTTCTTCTACAATATTATTGCTCAATTTTCTAAAAATAAAAAGAAAATAATGTTATGAATATCATCATAAATAAAAAAAATATTATACGATTATCCAAAAATATTATCATCATTCTTATAATAAATAAAAAGTTGCGTCTCTTTGTTTCTCTATCTGTCAGTCTGTCCGCGAATTTTGAAAAGCTTGAAATTGAATAAAATTTGACGTGACCTTTTAAGAAGATTGAGTCGCGAAGCGACGAAAAAATAATAAAAAAAGGTCAAATCGCGCCGGAGGCGCACCAGCCAGCTGTTTGAAGCGCCGGAGGCGCGGCAAACAGGCTGGCAATTACAAAAAATATAAAATTGCTGATGAATATGTGCCAATCGGTACTCGATAATATATTTTCCAAGTGTCTGTTTCAATTAGAGCTCCTCAAAATAAAATTATATATTTTTTTTTGCTTAAAAAACGAGAGATCGTTTTTTGGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAAAGGCGCAGATAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTACCGATTGGCACATATTC</pcr_primer_p2>
		<pcr_amplicon_size>488</pcr_amplicon_size>
		<canonical_amplicon>TTAAAGGCGCAGATAATTTTTTGATGATTTTGACCCGAATACCGTACTCAAAAAAACGCGGTCTTTCATATATAAAATCGTTTGTTCGCAGACAGTCAAAACAAAATCTTTGATGTTTCTTCTACAATATTATTGCTCAATTTTCTAAAAATAAAAAGAAAATAATGTTATGAATATCATCATAAATAAAAAAAATATTATACGATTATCCAAAAATATTATCATCATTCTTATAATAAATAAAAAGTTGCGTCTCTTTGTTTCTCTATCTGTCAGTCTGTCCGCGAATTTTGAAAAGCTTGAAATTGAATAAAATTTGACGTGACCTTTTAAGAAGATTGAGTCGCGAAGCGACGAAAAAATAATAAAAAAAGGTCAAATCGCGCCGGAGGCGCACCAGCCAGCTGTTTGAAGCGCCGGAGGCGCGGCAAACAGGCTGGCAATTACAAAAAATATAAAATTGCTGATGAATATGTGCCAATCGGTAC</canonical_amplicon>
		<polymorphic_amplicon>TTAAAGGCGCAGATAATTTTTTGATGATTTTGACCCGAATACCGTACTCAAAAAAACGCGGTCTTTCATATATAAAATCGTTTGTTCGSAGACAGTCAAAACAAAATCTTTGATGTTTCTTCTACAATATTATTGCTCAATTTTCTAAAAATAAAAAGAAAATAATGTTATGAATATCATCATAAATAAAAAAAATATTATACGATTATCCAAAAATATTATCATCATTCTTATAATAAATAAAAAGTTGCGTCTCTTTGTTTCTCTATCTGTCAGTCTGTCCGCGAATTTTGAAAAGCTTGAAATTGAATAAAATTTGACGTGACCTTTTAAGAAGATTGAGTCGCGAAGCGACGAAAAAATAATAAAAAAAGGTCAAATCGCGCCGGAGGCGCACCAGCCAGCTGTTTGAAGCGCCGGAGGCGCGGCAAACAGGCTGGCAATTACAAAAAATATAAAATTGCTGATGAATATGTGCCAATCGGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7173</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>109322</contig_pos>
        <strand>+</strand>
        <context>CATATTCTCA[C/T]ATGATTAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATCCGATTTAATACCAGAAGAGATTGAATAATCGATTTGCATATTCTCA</left_flank>
        <right_flank>ATGATTAATTAAAATTGGGATAAATTTGAAAAATATTAACGGGGTTGCAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGGAAGAGAATCTGAAAATGGAACTTTTCAGTAGGCAAGATTGGTCCTATTTGATACATGAAAGACCTCAACAGCCGAAAAAGCGAGAGAAATGACAACTGATACAGTGGTTATAGACTTTTCTAAATCCCGGAATCTCGTTGGCAGCATAATGAGAATATACAATGTAACAGAAGTACAAACTGCAATAAATGATAATGCAATAATGATAAAAACTAATTGGAAAAGAGATTGGCTTGCCTGAAATTTAAAGTTCGATTTGTTCTACAAAATTTTTAGATTTCTTACCCAAGGGACTATCTTGAGAAAGTTAACCAATAAACCGGCTTTCGAAATAATTAAATTCCAATCGGCAGATAGTGGAATAAAGAAAACAATTGGAATTATCCATGGAATATGTTTTTTTTCCATATCTTGTTCTGTTTTATTGGAAAAAGAACGGCTGTCATCCGATTTAATACCAGAAGAGATTGAATAATCGATTTGCATATTCTCATATGATTAATTAAAATTGGGATAAATTTGAAAAATATTAACGGGGTTGCAAAATATTCATGAGTCAGGGAACATATTGCAGTGGCGTACATAAAAAGGCGGGCGAAGAAAATATCAATAAGGAAAAGAATCAGACTCTAAATGTAAAAAGGGGGACTCCGAGACAAAACTTTTATCACATTAAAATTTTTTAAAGGTATGTATTTTCCTAATAATATTGCGACAATGGTTTGGAAAAAATCCGAAACCCCTGAAAACGCCGTTGAAAGAAAAAGGAGGTGGGACGCGAACAGGGATGAAGATTTGAGTTCCCACTCAGTGAGAAATCTAGGCCACAGCTGCAGGACGCCATATTTCGATAGCAAAGTTTCTGGATATTTGCCGATTTTATCTCCGGAACTGTTGGTCATTTAAAACATCCGTCACACAGCCGTGGCCTAGGGTTCTCACTGTACTGTAGTTTAAAACTTCGTCCATATTCGTCGCCTTTTTTTTAACGGCG</canonical>
            <polymorphic>AATTGGAAGAGAATCTGAAAATGGAACTTTTCAGTAGGCAAGATTGGTCCTATTTGATACATGAAAGACCTCAACAGCCGAAAAAGCGAGAGAAATGACAACTGATACAGTGGTTATAGACTTTTCTAAATCCCGGAATCTCGTTGGCAGCATAATGAGAATATACAATGTAACAGAAGTACAAACTGCAATAAATGATAATGCAATAATGATAAAAACTAATTGGAAAAGAGATTGGCTTGCCTGAAATTTAAAGTTCGATTTGTTCTACAAAATTTTTAGATTTCTTACCCAAGGGACTATCTTGAGAAAGTTAACCAATAAACCGGCTTTCGAAATAATTAAATTCCAATCGGCAGATAGTGGAATAAAGAAAACAATTGGAATTATCCATGGAATATGTTTTTTTTCCATATCTTGTTCTGTTTTATTGGAAAAAGAACGGCTGTCATCCGATTTAATACCAGAAGAGATTGAATAATCGATTTGCATATTCTCAYATGATTAATTAAAATTGGGATAAATTTGAAAAATATTAACGGGGTTGCAAAATATTCATGAGTCAGGGAACATATTGCAGTGGCGTACATAAAAAGGCGGGCGAAGAAAATATCAATAAGGAAAAGAATCAGACTCTAAATGTAAAAAGGGGGACTCCGAGACAAAACTTTTATCACATTAAAATTTTTTAAAGGTATGTATTTTCCTAATAATATTGCGACAATGGTTTGGAAAAAATCCGAAACCCCTGAAAACGCCGTTGAAAGAAAAAGGAGGTGGGACGCGAACAGGGATGAAGATTTGAGTTCCCACTCAGTGAGAAATCTAGGCCACAGCTGCAGGACGCCATATTTCGATAGCAAAGTTTCTGGATATTTGCCGATTTTATCTCCGGAACTGTTGGTCATTTAAAACATCCGTCACACAGCCGTGGCCTAGGGTTCTCACTGTACTGTAGTTTAAAACTTCGTCCATATTCGTCGCCTTTTTTTTAACGGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATATG</site>
                <isoschizomers>
                    <enzyme>FauNDI</enzyme>
                    <enzyme>NdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCCATATCTTGTTCTGTTT</pcr_primer_p1>
		<pcr_primer_p2>GTCCCCCTTTTTACATTTAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCCATATCTTGTTCTGTTTTATTGGAAAAAGAACGGCTGTCATCCGATTTAATACCAGAAGAGATTGAATAATCGATTTGCATATTCTCATATGATTAATTAAAATTGGGATAAATTTGAAAAATATTAACGGGGTTGCAAAATATTCATGAGTCAGGGAACATATTGCAGTGGCGTACATAAAAAGGCGGGCGAAGAAAATATCAATAAGGAAAAGAATCAGACTCTAAATGTAAAAAGGGGGAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCCATATCTTGTTCTGTTTTATTGGAAAAAGAACGGCTGTCATCCGATTTAATACCAGAAGAGATTGAATAATCGATTTGCATATTCTCAYATGATTAATTAAAATTGGGATAAATTTGAAAAATATTAACGGGGTTGCAAAATATTCATGAGTCAGGGAACATATTGCAGTGGCGTACATAAAAAGGCGGGCGAAGAAAATATCAATAAGGAAAAGAATCAGACTCTAAATGTAAAAAGGGGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7174</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>109445</contig_pos>
        <strand>+</strand>
        <context>TCAATAAGGA[A/G]AAGAATCAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTGCAGTGGCGTACATAAAAAGGCGGGCGAAGAAAATATCAATAAGGA</left_flank>
        <right_flank>AAGAATCAGACTCTAAATGTAAAAAGGGGGACTCCGAGACAAAACTTTTA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTAAATCCCGGAATCTCGTTGGCAGCATAATGAGAATATACAATGTAACAGAAGTACAAACTGCAATAAATGATAATGCAATAATGATAAAAACTAATTGGAAAAGAGATTGGCTTGCCTGAAATTTAAAGTTCGATTTGTTCTACAAAATTTTTAGATTTCTTACCCAAGGGACTATCTTGAGAAAGTTAACCAATAAACCGGCTTTCGAAATAATTAAATTCCAATCGGCAGATAGTGGAATAAAGAAAACAATTGGAATTATCCATGGAATATGTTTTTTTTCCATATCTTGTTCTGTTTTATTGGAAAAAGAACGGCTGTCATCCGATTTAATACCAGAAGAGATTGAATAATCGATTTGCATATTCTCATATGATTAATTAAAATTGGGATAAATTTGAAAAATATTAACGGGGTTGCAAAATATTCATGAGTCAGGGAACATATTGCAGTGGCGTACATAAAAAGGCGGGCGAAGAAAATATCAATAAGGAAAAGAATCAGACTCTAAATGTAAAAAGGGGGACTCCGAGACAAAACTTTTATCACATTAAAATTTTTTAAAGGTATGTATTTTCCTAATAATATTGCGACAATGGTTTGGAAAAAATCCGAAACCCCTGAAAACGCCGTTGAAAGAAAAAGGAGGTGGGACGCGAACAGGGATGAAGATTTGAGTTCCCACTCAGTGAGAAATCTAGGCCACAGCTGCAGGACGCCATATTTCGATAGCAAAGTTTCTGGATATTTGCCGATTTTATCTCCGGAACTGTTGGTCATTTAAAACATCCGTCACACAGCCGTGGCCTAGGGTTCTCACTGTACTGTAGTTTAAAACTTCGTCCATATTCGTCGCCTTTTTTTTAACGGCGCTTTAGGATTTCGTTTTTTTCTCAACTTTCTCCGAATAATACTGAAAAAAACACATACTTAACTTCAAACAATTTGATGCAATAAAGAGGTTTGGTCGGAGTCCCCTTTCTTTTAACATACCA</canonical>
            <polymorphic>TTCTAAATCCCGGAATCTCGTTGGCAGCATAATGAGAATATACAATGTAACAGAAGTACAAACTGCAATAAATGATAATGCAATAATGATAAAAACTAATTGGAAAAGAGATTGGCTTGCCTGAAATTTAAAGTTCGATTTGTTCTACAAAATTTTTAGATTTCTTACCCAAGGGACTATCTTGAGAAAGTTAACCAATAAACCGGCTTTCGAAATAATTAAATTCCAATCGGCAGATAGTGGAATAAAGAAAACAATTGGAATTATCCATGGAATATGTTTTTTTTCCATATCTTGTTCTGTTTTATTGGAAAAAGAACGGCTGTCATCCGATTTAATACCAGAAGAGATTGAATAATCGATTTGCATATTCTCATATGATTAATTAAAATTGGGATAAATTTGAAAAATATTAACGGGGTTGCAAAATATTCATGAGTCAGGGAACATATTGCAGTGGCGTACATAAAAAGGCGGGCGAAGAAAATATCAATAAGGARAAGAATCAGACTCTAAATGTAAAAAGGGGGACTCCGAGACAAAACTTTTATCACATTAAAATTTTTTAAAGGTATGTATTTTCCTAATAATATTGCGACAATGGTTTGGAAAAAATCCGAAACCCCTGAAAACGCCGTTGAAAGAAAAAGGAGGTGGGACGCGAACAGGGATGAAGATTTGAGTTCCCACTCAGTGAGAAATCTAGGCCACAGCTGCAGGACGCCATATTTCGATAGCAAAGTTTCTGGATATTTGCCGATTTTATCTCCGGAACTGTTGGTCATTTAAAACATCCGTCACACAGCCGTGGCCTAGGGTTCTCACTGTACTGTAGTTTAAAACTTCGTCCATATTCGTCGCCTTTTTTTTAACGGCGCTTTAGGATTTCGTTTTTTTCTCAACTTTCTCCGAATAATACTGAAAAAAACACATACTTAACTTCAAACAATTTGATGCAATAAAGAGGTTTGGTCGGAGTCCCCTTTCTTTTAACATACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGAGTCAGGGAACATATTG</pcr_primer_p1>
		<pcr_primer_p2>ACTCAAATCTTCATCCCTGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CATGAGTCAGGGAACATATTGCAGTGGCGTACATAAAAAGGCGGGCGAAGAAAATATCAATAAGGAAAAGAATCAGACTCTAAATGTAAAAAGGGGGACTCCGAGACAAAACTTTTATCACATTAAAATTTTTTAAAGGTATGTATTTTCCTAATAATATTGCGACAATGGTTTGGAAAAAATCCGAAACCCCTGAAAACGCCGTTGAAAGAAAAAGGAGGTGGGACGCGAACAGGGATGAAGATTTGAGT</canonical_amplicon>
		<polymorphic_amplicon>CATGAGTCAGGGAACATATTGCAGTGGCGTACATAAAAAGGCGGGCGAAGAAAATATCAATAAGGARAAGAATCAGACTCTAAATGTAAAAAGGGGGACTCCGAGACAAAACTTTTATCACATTAAAATTTTTTAAAGGTATGTATTTTCCTAATAATATTGCGACAATGGTTTGGAAAAAATCCGAAACCCCTGAAAACGCCGTTGAAAGAAAAAGGAGGTGGGACGCGAACAGGGATGAAGATTTGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7175</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>114777</contig_pos>
        <strand>+</strand>
        <context>CTATCCATCA[A/G]AACTCATACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAATCCAGAATTCTATCTGCCTCCAATGACGTCACAATCTATCCATCA</left_flank>
        <right_flank>AACTCATACACCGCCAACTGTGTCCCTTCGAATACACCAAAAGCTGTTCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACCTCAATTCTATTGTTCTATTCGAGTTCTCACACTCCACTGCCAGAACTCTGTTCCTTTGGGAAGATCCGCCTTTTTTTTTCGTACAATCTATATTGCTGTATACATTGTTCATTGTCAATTTTTATTCCTCATTCCATTCAGGATGAATCCTCTCTCCGGTTATATTTCGGATTGGTATTTTGCTTATCCGATGTCTGAGCCGAGTAAGACTGTACCCCAGAACTCATTGTTCCACATATTGACTCCCTCTGAAAATTCTCGTCTGTCACACAGTCCTTCGGTTACTCCCACTCCAATGATGCCTCAGAATGTAATCCAAATGGACATGTCAAAACTCCAGATGAGGTAAGCTTATTTTGTTCAATAGTTCTTCTATTTCATCATAATTTTTTTCAGATTCCCACTTAAAAATGTTGCTTCTAACGAATCGTTCCCATATCCACAGTTCAATCCAGAATTCTATCTGCCTCCAATGACGTCACAATCTATCCATCAGAACTCATACACCGCCAACTGTGTCCCTTCGAATACACCAAAAGCTGTTCCATCTAGGAAGCCTCGAAAAGAAACATTCGAGAGAAGAAGAAGAACTGCATTCAGTGAAAAGCAGTTGAAAATGTTGTGTGATCAATTCATGATAAATCAAAACCCCACTGGATTTGAATTGAATAAACTGGCAAAAGACACCGAGCTGGAACAGAAAACGGTCAAAATTTGGTTCAAAAATCGACGAGCCGCATGGAGAAAACAGAATCCTGCTTTAAAATCATATATGTCTCACTATCACGGATATTATTAAACGAAGGTGTGGAAGAGAAAAGCCAGTGGCCGCAGCCGAAGGTCTCGTAACGAAAACTACCGTAACCTAAAAATATATTTCTATTTTTATGATTTTTTTCTCAATTGTCAATTTTTTTCACAATCGAAAATTGTCTTCCAACTTGTAACAGGTTTTAAAATCCGGGAATCATGCTGTTTTAGGTTACGGTAGTTTTC</canonical>
            <polymorphic>GACCTCAATTCTATTGTTCTATTCGAGTTCTCACACTCCACTGCCAGAACTCTGTTCCTTTGGGAAGATCCGCCTTTTTTTTTCGTACAATCTATATTGCTGTATACATTGTTCATTGTCAATTTTTATTCCTCATTCCATTCAGGATGAATCCTCTCTCCGGTTATATTTCGGATTGGTATTTTGCTTATCCGATGTCTGAGCCGAGTAAGACTGTACCCCAGAACTCATTGTTCCACATATTGACTCCCTCTGAAAATTCTCGTCTGTCACACAGTCCTTCGGTTACTCCCACTCCAATGATGCCTCAGAATGTAATCCAAATGGACATGTCAAAACTCCAGATGAGGTAAGCTTATTTTGTTCAATAGTTCTTCTATTTCATCATAATTTTTTTCAGATTCCCACTTAAAAATGTTGCTTCTAACGAATCGTTCCCATATCCACAGTTCAATCCAGAATTCTATCTGCCTCCAATGACGTCACAATCTATCCATCARAACTCATACACCGCCAACTGTGTCCCTTCGAATACACCAAAAGCTGTTCCATCTAGGAAGCCTCGAAAAGAAACATTCGAGAGAAGAAGAAGAACTGCATTCAGTGAAAAGCAGTTGAAAATGTTGTGTGATCAATTCATGATAAATCAAAACCCCACTGGATTTGAATTGAATAAACTGGCAAAAGACACCGAGCTGGAACAGAAAACGGTCAAAATTTGGTTCAAAAATCGACGAGCCGCATGGAGAAAACAGAATCCTGCTTTAAAATCATATATGTCTCACTATCACGGATATTATTAAACGAAGGTGTGGAAGAGAAAAGCCAGTGGCCGCAGCCGAAGGTCTCGTAACGAAAACTACCGTAACCTAAAAATATATTTCTATTTTTATGATTTTTTTCTCAATTGTCAATTTTTTTCACAATCGAAAATTGTCTTCCAACTTGTAACAGGTTTTAAAATCCGGGAATCATGCTGTTTTAGGTTACGGTAGTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>501 173 100 89 56 54 20 7</canonical_bands>
                <polymorphic_bands>601 173 89 56 54 20 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAGGTAAGCTTATTTTGTTCA</pcr_primer_p1>
		<pcr_primer_p2>GTTCTTCTTCTTCTCTCGAATGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATGAGGTAAGCTTATTTTGTTCAATAGTTCTTCTATTTCATCATAATTTTTTTCAGATTCCCACTTAAAAATGTTGCTTCTAACGAATCGTTCCCATATCCACAGTTCAATCCAGAATTCTATCTGCCTCCAATGACGTCACAATCTATCCATCAGAACTCATACACCGCCAACTGTGTCCCTTCGAATACACCAAAAGCTGTTCCATCTAGGAAGCCTCGAAAAGAAACATTCGAGAGAAGAAGAAGAAC</canonical_amplicon>
		<polymorphic_amplicon>ATGAGGTAAGCTTATTTTGTTCAATAGTTCTTCTATTTCATCATAATTTTTTTCAGATTCCCACTTAAAAATGTTGCTTCTAACGAATCGTTCCCATATCCACAGTTCAATCCAGAATTCTATCTGCCTCCAATGACGTCACAATCTATCCATCARAACTCATACACCGCCAACTGTGTCCCTTCGAATACACCAAAAGCTGTTCCATCTAGGAAGCCTCGAAAAGAAACATTCGAGAGAAGAAGAAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7176</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>125135</contig_pos>
        <strand></strand>
        <context>TTGTTGAGCC[C/G]ATAACAGTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCGCCATTTCAAGTAGTTCGTCGAAATCTGGAAAGTGGTTTTGTTGAGCC</left_flank>
        <right_flank>ATAACAGTGAATCGGAAACTGACTTTGAGCTGGAGTCAATAAGCTTCCGA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGCTTCAAATACAATGCTTCAATTTCTCCCTAAAAAGTAGATTATGAATTGACCGTTCAATTTCAATATACTGTGTACCTTGCTCCAATAGTTGATGGCAAACGAAAGAGTTCTCATTGTAATTGGATCTTGACGAATGAAATAACCTCCAAAGTATATCCTCTTCAAATTGTATCTGGTTCCGTAGAGATAGGCCATCTGGAAAGTAAGATAACTGGGTCAAAATATGAGCATTAAAAAGCTACCTGTCCAATATTGTTGCTGACCATCAAAAGAAGTGATTTAGCAATGTCTTCTGGTTTATGTGTCTGCTTCATTGGCGCTTCACCAAATCGATTACACTTCGCCATTGATCCAGCAATAAGATCCGCTTTCAATCCGAGCTCATCGTAAGCTCCTCCATAAATATCACATACCAACTTATCAACGTTTCTGTGGTCTCCCCGATTCGCCATTTCAAGTAGTTCGTCGAAATCTGGAAAGTGGTTTTGTTGAGCCCATAACAGTGAATCGGAAACTGACTTTGAGCTGGAGTCAATAAGCTTCCGAGTCCCATGAATGTTCCTCCACCCATTGAACTTCCACCAACTCGTTCGTAACTCGTTGGTGAATCCACTTTCAGAATACTGATTCCAGTTCCGATATTCACAAGAAGGAATGGATAAATTAGATCGGCAGCGATTGGACGATATTGGAATCTGAAGAAGACGTTGTCATTAAGAACGTTTCTCCCAATTTTTTGAAACTCTTACTTATTAATTCCAATAGCGTCATGATGATAAGTGAAACTTTCGTCGACATTTGTGCTCAATAGGAAGTTGACGCCAAAGATGAGCGACCGCATTTCATCGGTTCTTTGGAGACGAACACCCAATTCTTTCATAATGATTTCCGAATACTTGTAGGATCCTCCTCCAGTACAATGAATCACATCCCCACTTTTACGGTCTGTCCAAATCTAAAAATTCAGTTTCTCTATGGAAAATTCGAACCGAATTG</canonical>
            <polymorphic>GTGCTTCAAATACAATGCTTCAATTTCTCCCTAAAAAGTAGATTATGAATTGACCGTTCAATTTCAATATACTGTGTACCTTGCTCCAATAGTTGATGGCAAACGAAAGAGTTCTCATTGTAATTGGATCTTGACGAATGAAATAACCTCCAAAGTATATCCTCTTCAAATTGTATCTGGTTCCGTAGAGATAGGCCATCTGGAAAGTAAGATAACTGGGTCAAAATATGAGCATTAAAAAGCTACCTGTCCAATATTGTTGCTGACCATCAAAAGAAGTGATTTAGCAATGTCTTCTGGTTTATGTGTCTGCTTCATTGGCGCTTCACCAAATCGATTACACTTCGCCATTGATCCAGCAATAAGATCCGCTTTCAATCCGAGCTCATCGTAAGCTCCTCCATAAATATCACATACCAACTTATCAACGTTTCTGTGGTCTCCCCGATTCGCCATTTCAAGTAGTTCGTCGAAATCTGGAAAGTGGTTTTGTTGAGCCSATAACAGTGAATCGGAAACTGACTTTGAGCTGGAGTCAATAAGCTTCCGAGTCCCATGAATGTTCCTCCACCCATTGAACTTCCACCAACTCGTTCGTAACTCGTTGGTGAATCCACTTTCAGAATACTGATTCCAGTTCCGATATTCACAAGAAGGAATGGATAAATTAGATCGGCAGCGATTGGACGATATTGGAATCTGAAGAAGACGTTGTCATTAAGAACGTTTCTCCCAATTTTTTGAAACTCTTACTTATTAATTCCAATAGCGTCATGATGATAAGTGAAACTTTCGTCGACATTTGTGCTCAATAGGAAGTTGACGCCAAAGATGAGCGACCGCATTTCATCGGTTCTTTGGAGACGAACACCCAATTCTTTCATAATGATTTCCGAATACTTGTAGGATCCTCCTCCAGTACAATGAATCACATCCCCACTTTTACGGTCTGTCCAAATCTAAAAATTCAGTTTCTCTATGGAAAATTCGAACCGAATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>501 386 113</canonical_bands>
                <polymorphic_bands>614 386</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>386 310 191 113</canonical_bands>
                <polymorphic_bands>423 386 191</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACCAACTTATCAACGTTTCTGT</pcr_primer_p1>
		<pcr_primer_p2>ATCCATTCCTTCTTGTGAATATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACCAACTTATCAACGTTTCTGTGGTCTCCCCGATTCGCCATTTCAAGTAGTTCGTCGAAATCTGGAAAGTGGTTTTGTTGAGCCCATAACAGTGAATCGGAAACTGACTTTGAGCTGGAGTCAATAAGCTTCCGAGTCCCATGAATGTTCCTCCACCCATTGAACTTCCACCAACTCGTTCGTAACTCGTTGGTGAATCCACTTTCAGAATACTGATTCCAGTTCCGATATTCACAAGAAGGAATGGAT</canonical_amplicon>
		<polymorphic_amplicon>TACCAACTTATCAACGTTTCTGTGGTCTCCCCGATTCGCCATTTCAAGTAGTTCGTCGAAATCTGGAAAGTGGTTTTGTTGAGCCSATAACAGTGAATCGGAAACTGACTTTGAGCTGGAGTCAATAAGCTTCCGAGTCCCATGAATGTTCCTCCACCCATTGAACTTCCACCAACTCGTTCGTAACTCGTTGGTGAATCCACTTTCAGAATACTGATTCCAGTTCCGATATTCACAAGAAGGAATGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7177</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>186193</contig_pos>
        <strand>+</strand>
        <context>AGAATCATTT[G/T]AAATTCATCG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTTCATGTTTGTTCAGTAATAAACAATTGATGAAGGGAAGAATCATTT</left_flank>
        <right_flank>AAATTCATCGTCAACTCATTCTGATGAACATGCCGGTTTTCTACAGAAAA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACGGTATTTTCTCCCTGGTAGGTCACACAAAAGTTTTTGATTATCGCTCTTTTCACTCCTAGAAATTCGATACCAACATGATTTTTTCTTCTTTCACCTTCTCTTCCTCTCCCCCCGTTTTTCATATTTTCTGCAAAAAGTTGTTCAAGTGAAGAACTCCAAAAAAATCTTCAGGAAGATTCAAGAAACCAATCTGCCAGGAAAAGCAATCTCATAAATCTGGAATTGAAAAAAACTTTGTCTTTTTGTGTTCGTTCTTCTTTTCCACTAAAAAAATAATCGTTTTCCAGAAGAGTCGGAGCATCCGTTGCCTCAAAGCACATCAACAAAAAGAGCACTTTAGATTCTCGTTGGCTCTTTTTGGTCGGCACCACCGGAAATGAGCAAAAGAGTACTCTTTTGGAGCATCTTTTCTGGGCTCTGTTTTCTTTCGTGTTGTTCATGTTCTATTTTCATGTTTGTTCAGTAATAAACAATTGATGAAGGGAAGAATCATTTTAAATTCATCGTCAACTCATTCTGATGAACATGCCGGTTTTCTACAGAAAAAAAGACAAGAAAAGTCGTTTTTTAGTCACAGAGCTAATTGCCGGTTTGGAGTATCAATTTGAGATCAAACGAACGTTTTTAAGGTCTCGTATTTCATACAATGAGTAACAAAGTTTCGAAACGTATCACCTACTATTACTCATTTCCGGTTTAGTGTTATTTTTGGTTTTTTAAAAATAGAAACATCAGAATATTTACAAAATGTAAAAACTTACCAATATTTGGAGCAGAGCATATAGTTGGAGAATATACCAGTGAATTTGCATGCGGACTTTGAAAATGCAGAGAAATATGGGATATGCATTTTAGGGAGAAAGATGTCGTTTCATTTTCAGTGATAGCCGAAACAGGAATAGAATCTGCATAAATATGTCCACCATGAAACGATAGTGACAAATTTTTAGATGGTGTACTCAGAATGATAGAAGCGGGATTCTGTGATGGTCCATT</canonical>
            <polymorphic>TACGGTATTTTCTCCCTGGTAGGTCACACAAAAGTTTTTGATTATCGCTCTTTTCACTCCTAGAAATTCGATACCAACATGATTTTTTCTTCTTTCACCTTCTCTTCCTCTCCCCCCGTTTTTCATATTTTCTGCAAAAAGTTGTTCAAGTGAAGAACTCCAAAAAAATCTTCAGGAAGATTCAAGAAACCAATCTGCCAGGAAAAGCAATCTCATAAATCTGGAATTGAAAAAAACTTTGTCTTTTTGTGTTCGTTCTTCTTTTCCACTAAAAAAATAATCGTTTTCCAGAAGAGTCGGAGCATCCGTTGCCTCAAAGCACATCAACAAAAAGAGCACTTTAGATTCTCGTTGGCTCTTTTTGGTCGGCACCACCGGAAATGAGCAAAAGAGTACTCTTTTGGAGCATCTTTTCTGGGCTCTGTTTTCTTTCGTGTTGTTCATGTTCTATTTTCATGTTTGTTCAGTAATAAACAATTGATGAAGGGAAGAATCATTTKAAATTCATCGTCAACTCATTCTGATGAACATGCCGGTTTTCTACAGAAAAAAAGACAAGAAAAGTCGTTTTTTAGTCACAGAGCTAATTGCCGGTTTGGAGTATCAATTTGAGATCAAACGAACGTTTTTAAGGTCTCGTATTTCATACAATGAGTAACAAAGTTTCGAAACGTATCACCTACTATTACTCATTTCCGGTTTAGTGTTATTTTTGGTTTTTTAAAAATAGAAACATCAGAATATTTACAAAATGTAAAAACTTACCAATATTTGGAGCAGAGCATATAGTTGGAGAATATACCAGTGAATTTGCATGCGGACTTTGAAAATGCAGAGAAATATGGGATATGCATTTTAGGGAGAAAGATGTCGTTTCATTTTCAGTGATAGCCGAAACAGGAATAGAATCTGCATAAATATGTCCACCATGAAACGATAGTGACAAATTTTTAGATGGTGTACTCAGAATGATAGAAGCGGGATTCTGTGATGGTCCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 278 222</canonical_bands>
                <polymorphic_bands>722 278</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>499 279 130 92</canonical_bands>
                <polymorphic_bands>629 279 92</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAACAAAAAGAGCACTTTAGA</pcr_primer_p1>
		<pcr_primer_p2>AAAAACGACTTTTCTTGTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCAACAAAAAGAGCACTTTAGATTCTCGTTGGCTCTTTTTGGTCGGCACCACCGGAAATGAGCAAAAGAGTACTCTTTTGGAGCATCTTTTCTGGGCTCTGTTTTCTTTCGTGTTGTTCATGTTCTATTTTCATGTTTGTTCAGTAATAAACAATTGATGAAGGGAAGAATCATTTTAAATTCATCGTCAACTCATTCTGATGAACATGCCGGTTTTCTACAGAAAAAAAGACAAGAAAAGTCGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATCAACAAAAAGAGCACTTTAGATTCTCGTTGGCTCTTTTTGGTCGGCACCACCGGAAATGAGCAAAAGAGTACTCTTTTGGAGCATCTTTTCTGGGCTCTGTTTTCTTTCGTGTTGTTCATGTTCTATTTTCATGTTTGTTCAGTAATAAACAATTGATGAAGGGAAGAATCATTTKAAATTCATCGTCAACTCATTCTGATGAACATGCCGGTTTTCTACAGAAAAAAAGACAAGAAAAGTCGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7178</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>185972</contig_pos>
        <strand>+</strand>
        <context>CTAAAAAAAT[A/C]ATCGTTTTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAAAAAACTTTGTCTTTTTGTGTTCGTTCTTCTTTTCCACTAAAAAAAT</left_flank>
        <right_flank>ATCGTTTTCCAGAAGAGTCGGAGCATCCGTTGCCTCAAAGCACATCAACA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCATTACCGTATTTAACCCAATAGAAGCCCACCCACCCAAACTGTAAATTTTGAGCTCAATTATATCAGCTCCTGTGACAGAAAATTTTGTTAACTGATCATGTAATGTTGATATTATGATAAATAATATATCGGTTGACATATTGTTCATATCATTTACAGAAAATGAGATATGTGGGCTCAAAGTTGACGATTTGGGTGGCATTCTATCAGAGCAAATACGGTATTTTCTCCCTGGTAGGTCACACAAAAGTTTTTGATTATCGCTCTTTTCACTCCTAGAAATTCGATACCAACATGATTTTTTCTTCTTTCACCTTCTCTTCCTCTCCCCCCGTTTTTCATATTTTCTGCAAAAAGTTGTTCAAGTGAAGAACTCCAAAAAAATCTTCAGGAAGATTCAAGAAACCAATCTGCCAGGAAAAGCAATCTCATAAATCTGGAATTGAAAAAAACTTTGTCTTTTTGTGTTCGTTCTTCTTTTCCACTAAAAAAATAATCGTTTTCCAGAAGAGTCGGAGCATCCGTTGCCTCAAAGCACATCAACAAAAAGAGCACTTTAGATTCTCGTTGGCTCTTTTTGGTCGGCACCACCGGAAATGAGCAAAAGAGTACTCTTTTGGAGCATCTTTTCTGGGCTCTGTTTTCTTTCGTGTTGTTCATGTTCTATTTTCATGTTTGTTCAGTAATAAACAATTGATGAAGGGAAGAATCATTTTAAATTCATCGTCAACTCATTCTGATGAACATGCCGGTTTTCTACAGAAAAAAAGACAAGAAAAGTCGTTTTTTAGTCACAGAGCTAATTGCCGGTTTGGAGTATCAATTTGAGATCAAACGAACGTTTTTAAGGTCTCGTATTTCATACAATGAGTAACAAAGTTTCGAAACGTATCACCTACTATTACTCATTTCCGGTTTAGTGTTATTTTTGGTTTTTTAAAAATAGAAACATCAGAATATTTACAAAATGTAAAAACTTACCAATATTTGGAGCA</canonical>
            <polymorphic>AACCATTACCGTATTTAACCCAATAGAAGCCCACCCACCCAAACTGTAAATTTTGAGCTCAATTATATCAGCTCCTGTGACAGAAAATTTTGTTAACTGATCATGTAATGTTGATATTATGATAAATAATATATCGGTTGACATATTGTTCATATCATTTACAGAAAATGAGATATGTGGGCTCAAAGTTGACGATTTGGGTGGCATTCTATCAGAGCAAATACGGTATTTTCTCCCTGGTAGGTCACACAAAAGTTTTTGATTATCGCTCTTTTCACTCCTAGAAATTCGATACCAACATGATTTTTTCTTCTTTCACCTTCTCTTCCTCTCCCCCCGTTTTTCATATTTTCTGCAAAAAGTTGTTCAAGTGAAGAACTCCAAAAAAATCTTCAGGAAGATTCAAGAAACCAATCTGCCAGGAAAAGCAATCTCATAAATCTGGAATTGAAAAAAACTTTGTCTTTTTGTGTTCGTTCTTCTTTTCCACTAAAAAAATMATCGTTTTCCAGAAGAGTCGGAGCATCCGTTGCCTCAAAGCACATCAACAAAAAGAGCACTTTAGATTCTCGTTGGCTCTTTTTGGTCGGCACCACCGGAAATGAGCAAAAGAGTACTCTTTTGGAGCATCTTTTCTGGGCTCTGTTTTCTTTCGTGTTGTTCATGTTCTATTTTCATGTTTGTTCAGTAATAAACAATTGATGAAGGGAAGAATCATTTTAAATTCATCGTCAACTCATTCTGATGAACATGCCGGTTTTCTACAGAAAAAAAGACAAGAAAAGTCGTTTTTTAGTCACAGAGCTAATTGCCGGTTTGGAGTATCAATTTGAGATCAAACGAACGTTTTTAAGGTCTCGTATTTCATACAATGAGTAACAAAGTTTCGAAACGTATCACCTACTATTACTCATTTCCGGTTTAGTGTTATTTTTGGTTTTTTAAAAATAGAAACATCAGAATATTTACAAAATGTAAAAACTTACCAATATTTGGAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCATAAATCTGGAATTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAAACATGAAAATAGAACATGAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTCATAAATCTGGAATTGAAAAAAACTTTGTCTTTTTGTGTTCGTTCTTCTTTTCCACTAAAAAAATAATCGTTTTCCAGAAGAGTCGGAGCATCCGTTGCCTCAAAGCACATCAACAAAAAGAGCACTTTAGATTCTCGTTGGCTCTTTTTGGTCGGCACCACCGGAAATGAGCAAAAGAGTACTCTTTTGGAGCATCTTTTCTGGGCTCTGTTTTCTTTCGTGTTGTTCATGTTCTATTTTCATGTTTG</canonical_amplicon>
		<polymorphic_amplicon>CTCATAAATCTGGAATTGAAAAAAACTTTGTCTTTTTGTGTTCGTTCTTCTTTTCCACTAAAAAAATMATCGTTTTCCAGAAGAGTCGGAGCATCCGTTGCCTCAAAGCACATCAACAAAAAGAGCACTTTAGATTCTCGTTGGCTCTTTTTGGTCGGCACCACCGGAAATGAGCAAAAGAGTACTCTTTTGGAGCATCTTTTCTGGGCTCTGTTTTCTTTCGTGTTGTTCATGTTCTATTTTCATGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7179</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>185803</contig_pos>
        <strand>+</strand>
        <context>TTCTCTTCCT[C/T]TCCCCCCGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAGAAATTCGATACCAACATGATTTTTTCTTCTTTCACCTTCTCTTCCT</left_flank>
        <right_flank>TCCCCCCGTTTTTCATATTTTCTGCAAAAAGTTGTTCAAGTGAAGAACTC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGTACGAAATTCCGATAGATCAGGTCGAGCTTGTACGATTTTCAGGGAACCTTTATAAAGTATAAAAGTTCGCTCCAGACCTATTGAAGTTTGACAATAACTTTGAAGTGCAAATACTTTAGACTTCACTTTTGGGCTCTGAAGAATCGGATGTGGCATTTCTGAATAACCATTACCGTATTTAACCCAATAGAAGCCCACCCACCCAAACTGTAAATTTTGAGCTCAATTATATCAGCTCCTGTGACAGAAAATTTTGTTAACTGATCATGTAATGTTGATATTATGATAAATAATATATCGGTTGACATATTGTTCATATCATTTACAGAAAATGAGATATGTGGGCTCAAAGTTGACGATTTGGGTGGCATTCTATCAGAGCAAATACGGTATTTTCTCCCTGGTAGGTCACACAAAAGTTTTTGATTATCGCTCTTTTCACTCCTAGAAATTCGATACCAACATGATTTTTTCTTCTTTCACCTTCTCTTCCTCTCCCCCCGTTTTTCATATTTTCTGCAAAAAGTTGTTCAAGTGAAGAACTCCAAAAAAATCTTCAGGAAGATTCAAGAAACCAATCTGCCAGGAAAAGCAATCTCATAAATCTGGAATTGAAAAAAACTTTGTCTTTTTGTGTTCGTTCTTCTTTTCCACTAAAAAAATAATCGTTTTCCAGAAGAGTCGGAGCATCCGTTGCCTCAAAGCACATCAACAAAAAGAGCACTTTAGATTCTCGTTGGCTCTTTTTGGTCGGCACCACCGGAAATGAGCAAAAGAGTACTCTTTTGGAGCATCTTTTCTGGGCTCTGTTTTCTTTCGTGTTGTTCATGTTCTATTTTCATGTTTGTTCAGTAATAAACAATTGATGAAGGGAAGAATCATTTTAAATTCATCGTCAACTCATTCTGATGAACATGCCGGTTTTCTACAGAAAAAAAGACAAGAAAAGTCGTTTTTTAGTCACAGAGCTAATTGCCGGTTTGGAGTATCAATTT</canonical>
            <polymorphic>TGGGTACGAAATTCCGATAGATCAGGTCGAGCTTGTACGATTTTCAGGGAACCTTTATAAAGTATAAAAGTTCGCTCCAGACCTATTGAAGTTTGACAATAACTTTGAAGTGCAAATACTTTAGACTTCACTTTTGGGCTCTGAAGAATCGGATGTGGCATTTCTGAATAACCATTACCGTATTTAACCCAATAGAAGCCCACCCACCCAAACTGTAAATTTTGAGCTCAATTATATCAGCTCCTGTGACAGAAAATTTTGTTAACTGATCATGTAATGTTGATATTATGATAAATAATATATCGGTTGACATATTGTTCATATCATTTACAGAAAATGAGATATGTGGGCTCAAAGTTGACGATTTGGGTGGCATTCTATCAGAGCAAATACGGTATTTTCTCCCTGGTAGGTCACACAAAAGTTTTTGATTATCGCTCTTTTCACTCCTAGAAATTCGATACCAACATGATTTTTTCTTCTTTCACCTTCTCTTCCTYTCCCCCCGTTTTTCATATTTTCTGCAAAAAGTTGTTCAAGTGAAGAACTCCAAAAAAATCTTCAGGAAGATTCAAGAAACCAATCTGCCAGGAAAAGCAATCTCATAAATCTGGAATTGAAAAAAACTTTGTCTTTTTGTGTTCGTTCTTCTTTTCCACTAAAAAAATAATCGTTTTCCAGAAGAGTCGGAGCATCCGTTGCCTCAAAGCACATCAACAAAAAGAGCACTTTAGATTCTCGTTGGCTCTTTTTGGTCGGCACCACCGGAAATGAGCAAAAGAGTACTCTTTTGGAGCATCTTTTCTGGGCTCTGTTTTCTTTCGTGTTGTTCATGTTCTATTTTCATGTTTGTTCAGTAATAAACAATTGATGAAGGGAAGAATCATTTTAAATTCATCGTCAACTCATTCTGATGAACATGCCGGTTTTCTACAGAAAAAAAGACAAGAAAAGTCGTTTTTTAGTCACAGAGCTAATTGCCGGTTTGGAGTATCAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGGTAGGTCACACAAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAGAACGAACACAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTGGTAGGTCACACAAAAGTTTTTGATTATCGCTCTTTTCACTCCTAGAAATTCGATACCAACATGATTTTTTCTTCTTTCACCTTCTCTTCCTCTCCCCCCGTTTTTCATATTTTCTGCAAAAAGTTGTTCAAGTGAAGAACTCCAAAAAAATCTTCAGGAAGATTCAAGAAACCAATCTGCCAGGAAAAGCAATCTCATAAATCTGGAATTGAAAAAAACTTTGTCTTTTTGTGTTCGTTCTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>CTGGTAGGTCACACAAAAGTTTTTGATTATCGCTCTTTTCACTCCTAGAAATTCGATACCAACATGATTTTTTCTTCTTTCACCTTCTCTTCCTYTCCCCCCGTTTTTCATATTTTCTGCAAAAAGTTGTTCAAGTGAAGAACTCCAAAAAAATCTTCAGGAAGATTCAAGAAACCAATCTGCCAGGAAAAGCAATCTCATAAATCTGGAATTGAAAAAAACTTTGTCTTTTTGTGTTCGTTCTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7180</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>201157</contig_pos>
        <strand>+</strand>
        <context>GATCAGCTGG[A/G]TACAACTATG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCGAACGTGTGAAAACTGTGCATTCGCAGGGAGGGTATGGATCAGCTGG</left_flank>
        <right_flank>TACAACTATGACTGGAAAATCGAAGAAGCCCAGAAAAATGTTCTTCGTAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTGGTTTCAAAAGGCGAATCGTTCACCACAAATCTTGCGAAACAAGAAGCAGATTTAACTCCGGAAATGATCGCATCGTAGGAGCTTCGTTCTGTGTATTTAAACAATATCAGAATTTCAGAGGATCATGGAAAGACAAGCAATTCAAGAAGTACAATTTCGAATCACTGGGAGTTGTTCCATCTTCGGGACATCTCCATCCATTGATGAAAGTCCGATCGGAGTTCCGTCAAATTTTCTTCTCAATGGGCTTCTCTGAAATGGCTACAAACCGATACGTCGAGTCTTCATTCTGGAATTTCGATGCACTTTTCCAGCCGCAACAACATCCAGCTAGAGATGCTCACGATACCTTCTTTGTGTCTGGTTAGTTGAATATTAAAAGTTGTGCAATTGAGGAGATTTTTTACAGATCCAGCTCTCAGCACTAAATTCCCTGAAGACTACCTCGAACGTGTGAAAACTGTGCATTCGCAGGGAGGGTATGGATCAGCTGGGTACAACTATGACTGGAAAATCGAAGAAGCCCAGAAAAATGTTCTTCGTACTCACACCACAGCGGTCTCAGCCCGTCAACTGTATCAACTCGCGCAAGAGGTAAGCGAGAAAAAAAACTTTTCAAATAGATGCAACCGGCATGCCCAACGCGTTTCTCTTCCCCTCTTTCTCTTCTCCTCTTTTTAACGCAGTTGGTTGTCCGTGTTCTTGATGCGCGCGTGGCGCAGCTGGGAACACTCGCGTTTGGAAGCGCGGGGTTGCTGGTTCGCGTCTCACTATCAGCCCGGTCTTTGCCCCGGATCAACTTGAATAGTTATGACGGTTTCCGACCAGGGAAAATAGATTCTTGTACGTAGAGGTGATTTCAGACTACGTTCCGAATGTCTCTTGTCTACGTACAATACATTTTTCACATACTAAACAGCTATACAATGTTTGATTTTCATTTTTAAGGGATTCCGCCCATCGAAACTGTTCTCCATTGATCGTGTCTTCCGTAA</canonical>
            <polymorphic>TCCTGGTTTCAAAAGGCGAATCGTTCACCACAAATCTTGCGAAACAAGAAGCAGATTTAACTCCGGAAATGATCGCATCGTAGGAGCTTCGTTCTGTGTATTTAAACAATATCAGAATTTCAGAGGATCATGGAAAGACAAGCAATTCAAGAAGTACAATTTCGAATCACTGGGAGTTGTTCCATCTTCGGGACATCTCCATCCATTGATGAAAGTCCGATCGGAGTTCCGTCAAATTTTCTTCTCAATGGGCTTCTCTGAAATGGCTACAAACCGATACGTCGAGTCTTCATTCTGGAATTTCGATGCACTTTTCCAGCCGCAACAACATCCAGCTAGAGATGCTCACGATACCTTCTTTGTGTCTGGTTAGTTGAATATTAAAAGTTGTGCAATTGAGGAGATTTTTTACAGATCCAGCTCTCAGCACTAAATTCCCTGAAGACTACCTCGAACGTGTGAAAACTGTGCATTCGCAGGGAGGGTATGGATCAGCTGGRTACAACTATGACTGGAAAATCGAAGAAGCCCAGAAAAATGTTCTTCGTACTCACACCACAGCGGTCTCAGCCCGTCAACTGTATCAACTCGCGCAAGAGGTAAGCGAGAAAAAAAACTTTTCAAATAGATGCAACCGGCATGCCCAACGCGTTTCTCTTCCCCTCTTTCTCTTCTCCTCTTTTTAACGCAGTTGGTTGTCCGTGTTCTTGATGCGCGCGTGGCGCAGCTGGGAACACTCGCGTTTGGAAGCGCGGGGTTGCTGGTTCGCGTCTCACTATCAGCCCGGTCTTTGCCCCGGATCAACTTGAATAGTTATGACGGTTTCCGACCAGGGAAAATAGATTCTTGTACGTAGAGGTGATTTCAGACTACGTTCCGAATGTCTCTTGTCTACGTACAATACATTTTTCACATACTAAACAGCTATACAATGTTTGATTTTCATTTTTAAGGGATTCCGCCCATCGAAACTGTTCTCCATTGATCGTGTCTTCCGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>346 302 155 103 47 47</canonical_bands>
                <polymorphic_bands>393 302 155 103 47</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAAATTCCCTGAAGACTACCTC</pcr_primer_p1>
		<pcr_primer_p2>AGAAGAGAAAGAGGGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTAAATTCCCTGAAGACTACCTCGAACGTGTGAAAACTGTGCATTCGCAGGGAGGGTATGGATCAGCTGGGTACAACTATGACTGGAAAATCGAAGAAGCCCAGAAAAATGTTCTTCGTACTCACACCACAGCGGTCTCAGCCCGTCAACTGTATCAACTCGCGCAAGAGGTAAGCGAGAAAAAAAACTTTTCAAATAGATGCAACCGGCATGCCCAACGCGTTTCTCTTCCCCTCTTTCTCTTCT</canonical_amplicon>
		<polymorphic_amplicon>CTAAATTCCCTGAAGACTACCTCGAACGTGTGAAAACTGTGCATTCGCAGGGAGGGTATGGATCAGCTGGRTACAACTATGACTGGAAAATCGAAGAAGCCCAGAAAAATGTTCTTCGTACTCACACCACAGCGGTCTCAGCCCGTCAACTGTATCAACTCGCGCAAGAGGTAAGCGAGAAAAAAAACTTTTCAAATAGATGCAACCGGCATGCCCAACGCGTTTCTCTTCCCCTCTTTCTCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7181</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>201134</contig_pos>
        <strand>+</strand>
        <context>TGTGCATTCG[A/C]AGGGAGGGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCACTAAATTCCCTGAAGACTACCTCGAACGTGTGAAAACTGTGCATTCG</left_flank>
        <right_flank>AGGGAGGGTATGGATCAGCTGGGTACAACTATGACTGGAAAATCGAAGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTCCAGCAATATCAAAGGGCTCCTGGTTTCAAAAGGCGAATCGTTCACCACAAATCTTGCGAAACAAGAAGCAGATTTAACTCCGGAAATGATCGCATCGTAGGAGCTTCGTTCTGTGTATTTAAACAATATCAGAATTTCAGAGGATCATGGAAAGACAAGCAATTCAAGAAGTACAATTTCGAATCACTGGGAGTTGTTCCATCTTCGGGACATCTCCATCCATTGATGAAAGTCCGATCGGAGTTCCGTCAAATTTTCTTCTCAATGGGCTTCTCTGAAATGGCTACAAACCGATACGTCGAGTCTTCATTCTGGAATTTCGATGCACTTTTCCAGCCGCAACAACATCCAGCTAGAGATGCTCACGATACCTTCTTTGTGTCTGGTTAGTTGAATATTAAAAGTTGTGCAATTGAGGAGATTTTTTACAGATCCAGCTCTCAGCACTAAATTCCCTGAAGACTACCTCGAACGTGTGAAAACTGTGCATTCGCAGGGAGGGTATGGATCAGCTGGGTACAACTATGACTGGAAAATCGAAGAAGCCCAGAAAAATGTTCTTCGTACTCACACCACAGCGGTCTCAGCCCGTCAACTGTATCAACTCGCGCAAGAGGTAAGCGAGAAAAAAAACTTTTCAAATAGATGCAACCGGCATGCCCAACGCGTTTCTCTTCCCCTCTTTCTCTTCTCCTCTTTTTAACGCAGTTGGTTGTCCGTGTTCTTGATGCGCGCGTGGCGCAGCTGGGAACACTCGCGTTTGGAAGCGCGGGGTTGCTGGTTCGCGTCTCACTATCAGCCCGGTCTTTGCCCCGGATCAACTTGAATAGTTATGACGGTTTCCGACCAGGGAAAATAGATTCTTGTACGTAGAGGTGATTTCAGACTACGTTCCGAATGTCTCTTGTCTACGTACAATACATTTTTCACATACTAAACAGCTATACAATGTTTGATTTTCATTTTTAAGGGATTCCGCCCATCGAAACTGTTC</canonical>
            <polymorphic>AATTTCCAGCAATATCAAAGGGCTCCTGGTTTCAAAAGGCGAATCGTTCACCACAAATCTTGCGAAACAAGAAGCAGATTTAACTCCGGAAATGATCGCATCGTAGGAGCTTCGTTCTGTGTATTTAAACAATATCAGAATTTCAGAGGATCATGGAAAGACAAGCAATTCAAGAAGTACAATTTCGAATCACTGGGAGTTGTTCCATCTTCGGGACATCTCCATCCATTGATGAAAGTCCGATCGGAGTTCCGTCAAATTTTCTTCTCAATGGGCTTCTCTGAAATGGCTACAAACCGATACGTCGAGTCTTCATTCTGGAATTTCGATGCACTTTTCCAGCCGCAACAACATCCAGCTAGAGATGCTCACGATACCTTCTTTGTGTCTGGTTAGTTGAATATTAAAAGTTGTGCAATTGAGGAGATTTTTTACAGATCCAGCTCTCAGCACTAAATTCCCTGAAGACTACCTCGAACGTGTGAAAACTGTGCATTCGMAGGGAGGGTATGGATCAGCTGGGTACAACTATGACTGGAAAATCGAAGAAGCCCAGAAAAATGTTCTTCGTACTCACACCACAGCGGTCTCAGCCCGTCAACTGTATCAACTCGCGCAAGAGGTAAGCGAGAAAAAAAACTTTTCAAATAGATGCAACCGGCATGCCCAACGCGTTTCTCTTCCCCTCTTTCTCTTCTCCTCTTTTTAACGCAGTTGGTTGTCCGTGTTCTTGATGCGCGCGTGGCGCAGCTGGGAACACTCGCGTTTGGAAGCGCGGGGTTGCTGGTTCGCGTCTCACTATCAGCCCGGTCTTTGCCCCGGATCAACTTGAATAGTTATGACGGTTTCCGACCAGGGAAAATAGATTCTTGTACGTAGAGGTGATTTCAGACTACGTTCCGAATGTCTCTTGTCTACGTACAATACATTTTTCACATACTAAACAGCTATACAATGTTTGATTTTCATTTTTAAGGGATTCCGCCCATCGAAACTGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCACTAAATTCCCTGAAGACT</pcr_primer_p1>
		<pcr_primer_p2>AGAAGAGAAAGAGGGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCACTAAATTCCCTGAAGACTACCTCGAACGTGTGAAAACTGTGCATTCGCAGGGAGGGTATGGATCAGCTGGGTACAACTATGACTGGAAAATCGAAGAAGCCCAGAAAAATGTTCTTCGTACTCACACCACAGCGGTCTCAGCCCGTCAACTGTATCAACTCGCGCAAGAGGTAAGCGAGAAAAAAAACTTTTCAAATAGATGCAACCGGCATGCCCAACGCGTTTCTCTTCCCCTCTTTCTCTTCT</canonical_amplicon>
		<polymorphic_amplicon>AGCACTAAATTCCCTGAAGACTACCTCGAACGTGTGAAAACTGTGCATTCGMAGGGAGGGTATGGATCAGCTGGGTACAACTATGACTGGAAAATCGAAGAAGCCCAGAAAAATGTTCTTCGTACTCACACCACAGCGGTCTCAGCCCGTCAACTGTATCAACTCGCGCAAGAGGTAAGCGAGAAAAAAAACTTTTCAAATAGATGCAACCGGCATGCCCAACGCGTTTCTCTTCCCCTCTTTCTCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7182</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>221984</contig_pos>
        <strand>+</strand>
        <context>CCTATTATGT[A/G]TGTTTCTTGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAGATCGAATTTCCCTTATCGAACTACATGTTCCTAAACCTATTATGT</left_flank>
        <right_flank>TGTTTCTTGCCATTGTAAATATCCCAACCTCGGAAGCGATTTTATTACTT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACACGCCCACACTCTGATATACCCTTCTCTACTGGCTCGTGGTCTTACTGTATTGTTCCTCGCCGTTTTCGGTGTTTCGACAGTTTTCGCGTCATCCAAATCTCCACATTCTCCATCCGAACATCAAGCATGGAGAGATGAAGGAGCTAAAATCGATGACGATGAACCGAATATTGCATTGCAACTCGTTTTGTTCGTCTTTTGCATGCTCTTTCTCATTATTGCAATCTTCTATTGTTCCTATTTGGTTGTTCGATTGATCCATTTTGAACAGTCATATGCGAGGTTAAAGGAAAGAAGAAGCTCGCTGATTCAAGCAGGGATGATTGGTAAGTTCAATTTATTTGTGACTTTTTTAACTGGATCATTTTCAGATCCCGATTTTCCAAGTCCCAACAATTATTCCGCATCTAGACGTGCTTCTTCTGCATAGACTTCCAACTCTTTTCAGATCGAATTTCCCTTATCGAACTACATGTTCCTAAACCTATTATGTGTGTTTCTTGCCATTGTAAATATCCCAACCTCGGAAGCGATTTTATTACTTTTTAGAGCTCAAATAAATATCAATATTTTATTTTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTTACTTCTTTTGAAAGATATCAAAAAGTGGTTTAGTAAAATGTTTATCAGGATATCAGCAACATTTTACTAGTTAGCCACTTTTTGATATCTTTCACAGTAAATGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATTTCAAAAAGTAATTAAATACATGCATTAAACCTGAAATGTGAACTATGGAACATTCGAATATCACAGCAGGCAAGATATAAGTCAATCTTCAAAGATTCTCAACAATCCTCTTAAGGAAACGATCAACGTCCTCGATTCTCTTTTTGGGGCGAGTGCATGCTGGAAGTTGCTCATGGATTATAGGAAGGAAGTAGG</canonical>
            <polymorphic>AAAACACGCCCACACTCTGATATACCCTTCTCTACTGGCTCGTGGTCTTACTGTATTGTTCCTCGCCGTTTTCGGTGTTTCGACAGTTTTCGCGTCATCCAAATCTCCACATTCTCCATCCGAACATCAAGCATGGAGAGATGAAGGAGCTAAAATCGATGACGATGAACCGAATATTGCATTGCAACTCGTTTTGTTCGTCTTTTGCATGCTCTTTCTCATTATTGCAATCTTCTATTGTTCCTATTTGGTTGTTCGATTGATCCATTTTGAACAGTCATATGCGAGGTTAAAGGAAAGAAGAAGCTCGCTGATTCAAGCAGGGATGATTGGTAAGTTCAATTTATTTGTGACTTTTTTAACTGGATCATTTTCAGATCCCGATTTTCCAAGTCCCAACAATTATTCCGCATCTAGACGTGCTTCTTCTGCATAGACTTCCAACTCTTTTCAGATCGAATTTCCCTTATCGAACTACATGTTCCTAAACCTATTATGTRTGTTTCTTGCCATTGTAAATATCCCAACCTCGGAAGCGATTTTATTACTTTTTAGAGCTCAAATAAATATCAATATTTTATTTTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTTACTTCTTTTGAAAGATATCAAAAAGTGGTTTAGTAAAATGTTTATCAGGATATCAGCAACATTTTACTAGTTAGCCACTTTTTGATATCTTTCACAGTAAATGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATTTCAAAAAGTAATTAAATACATGCATTAAACCTGAAATGTGAACTATGGAACATTCGAATATCACAGCAGGCAAGATATAAGTCAATCTTCAAAGATTCTCAACAATCCTCTTAAGGAAACGATCAACGTCCTCGATTCTCTTTTTGGGGCGAGTGCATGCTGGAAGTTGCTCATGGATTATAGGAAGGAAGTAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>243 108 92 78 70 67 50 46 40 33 32 30 29 23 17 13 13 6 6 2 2</canonical_bands>
                <polymorphic_bands>243 188 92 70 67 50 46 40 33 32 30 29 23 17 13 13 6 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGATGATTGGTAAGTTCAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAGCTCTAAAAAGTAATAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GGGATGATTGGTAAGTTCAATTTATTTGTGACTTTTTTAACTGGATCATTTTCAGATCCCGATTTTCCAAGTCCCAACAATTATTCCGCATCTAGACGTGCTTCTTCTGCATAGACTTCCAACTCTTTTCAGATCGAATTTCCCTTATCGAACTACATGTTCCTAAACCTATTATGTGTGTTTCTTGCCATTGTAAATATCCCAACCTCGGAAGCGATTTTATTACTTTTTAGAGCTCAAA</canonical_amplicon>
		<polymorphic_amplicon>GGGATGATTGGTAAGTTCAATTTATTTGTGACTTTTTTAACTGGATCATTTTCAGATCCCGATTTTCCAAGTCCCAACAATTATTCCGCATCTAGACGTGCTTCTTCTGCATAGACTTCCAACTCTTTTCAGATCGAATTTCCCTTATCGAACTACATGTTCCTAAACCTATTATGTRTGTTTCTTGCCATTGTAAATATCCCAACCTCGGAAGCGATTTTATTACTTTTTAGAGCTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7183</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>221995</contig_pos>
        <strand>+</strand>
        <context>TGTTTCTTGC[C/T]ATTGTAAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCCCTTATCGAACTACATGTTCCTAAACCTATTATGTGTGTTTCTTGC</left_flank>
        <right_flank>ATTGTAAATATCCCAACCTCGGAAGCGATTTTATTACTTTTTAGAGCTCA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACTCTGATATACCCTTCTCTACTGGCTCGTGGTCTTACTGTATTGTTCCTCGCCGTTTTCGGTGTTTCGACAGTTTTCGCGTCATCCAAATCTCCACATTCTCCATCCGAACATCAAGCATGGAGAGATGAAGGAGCTAAAATCGATGACGATGAACCGAATATTGCATTGCAACTCGTTTTGTTCGTCTTTTGCATGCTCTTTCTCATTATTGCAATCTTCTATTGTTCCTATTTGGTTGTTCGATTGATCCATTTTGAACAGTCATATGCGAGGTTAAAGGAAAGAAGAAGCTCGCTGATTCAAGCAGGGATGATTGGTAAGTTCAATTTATTTGTGACTTTTTTAACTGGATCATTTTCAGATCCCGATTTTCCAAGTCCCAACAATTATTCCGCATCTAGACGTGCTTCTTCTGCATAGACTTCCAACTCTTTTCAGATCGAATTTCCCTTATCGAACTACATGTTCCTAAACCTATTATGTGTGTTTCTTGCCATTGTAAATATCCCAACCTCGGAAGCGATTTTATTACTTTTTAGAGCTCAAATAAATATCAATATTTTATTTTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTTACTTCTTTTGAAAGATATCAAAAAGTGGTTTAGTAAAATGTTTATCAGGATATCAGCAACATTTTACTAGTTAGCCACTTTTTGATATCTTTCACAGTAAATGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATTTCAAAAAGTAATTAAATACATGCATTAAACCTGAAATGTGAACTATGGAACATTCGAATATCACAGCAGGCAAGATATAAGTCAATCTTCAAAGATTCTCAACAATCCTCTTAAGGAAACGATCAACGTCCTCGATTCTCTTTTTGGGGCGAGTGCATGCTGGAAGTTGCTCATGGATTATAGGAAGGAAGTAGGGGAGAAGACGA</canonical>
            <polymorphic>ACACTCTGATATACCCTTCTCTACTGGCTCGTGGTCTTACTGTATTGTTCCTCGCCGTTTTCGGTGTTTCGACAGTTTTCGCGTCATCCAAATCTCCACATTCTCCATCCGAACATCAAGCATGGAGAGATGAAGGAGCTAAAATCGATGACGATGAACCGAATATTGCATTGCAACTCGTTTTGTTCGTCTTTTGCATGCTCTTTCTCATTATTGCAATCTTCTATTGTTCCTATTTGGTTGTTCGATTGATCCATTTTGAACAGTCATATGCGAGGTTAAAGGAAAGAAGAAGCTCGCTGATTCAAGCAGGGATGATTGGTAAGTTCAATTTATTTGTGACTTTTTTAACTGGATCATTTTCAGATCCCGATTTTCCAAGTCCCAACAATTATTCCGCATCTAGACGTGCTTCTTCTGCATAGACTTCCAACTCTTTTCAGATCGAATTTCCCTTATCGAACTACATGTTCCTAAACCTATTATGTGTGTTTCTTGCYATTGTAAATATCCCAACCTCGGAAGCGATTTTATTACTTTTTAGAGCTCAAATAAATATCAATATTTTATTTTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTTACTTCTTTTGAAAGATATCAAAAAGTGGTTTAGTAAAATGTTTATCAGGATATCAGCAACATTTTACTAGTTAGCCACTTTTTGATATCTTTCACAGTAAATGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATTTCAAAAAGTAATTAAATACATGCATTAAACCTGAAATGTGAACTATGGAACATTCGAATATCACAGCAGGCAAGATATAAGTCAATCTTCAAAGATTCTCAACAATCCTCTTAAGGAAACGATCAACGTCCTCGATTCTCTTTTTGGGGCGAGTGCATGCTGGAAGTTGCTCATGGATTATAGGAAGGAAGTAGGGGAGAAGACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTTCCCTTATCGAACTACAT</pcr_primer_p1>
		<pcr_primer_p2>TGCATGTATTTAATTACTTTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>372</pcr_amplicon_size>
		<canonical_amplicon>GAATTTCCCTTATCGAACTACATGTTCCTAAACCTATTATGTGTGTTTCTTGCCATTGTAAATATCCCAACCTCGGAAGCGATTTTATTACTTTTTAGAGCTCAAATAAATATCAATATTTTATTTTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTTACTTCTTTTGAAAGATATCAAAAAGTGGTTTAGTAAAATGTTTATCAGGATATCAGCAACATTTTACTAGTTAGCCACTTTTTGATATCTTTCACAGTAAATGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATTTCAAAAAGTAATTAAATACATGCA</canonical_amplicon>
		<polymorphic_amplicon>GAATTTCCCTTATCGAACTACATGTTCCTAAACCTATTATGTGTGTTTCTTGCYATTGTAAATATCCCAACCTCGGAAGCGATTTTATTACTTTTTAGAGCTCAAATAAATATCAATATTTTATTTTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTTACTTCTTTTGAAAGATATCAAAAAGTGGTTTAGTAAAATGTTTATCAGGATATCAGCAACATTTTACTAGTTAGCCACTTTTTGATATCTTTCACAGTAAATGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATTTCAAAAAGTAATTAAATACATGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7184</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>223358</contig_pos>
        <strand>+</strand>
        <context>AAAAAATTTG[A/C]AATTTTTGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATCCAGCTCAATGTGCTTTCACAGTACCGCGAAACTCTGAAAAAATTTG</left_flank>
        <right_flank>AATTTTTGATCCGAAATGGAAGAAAACAAAGTCTTACTTTGGATTTGTCA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCGGTGACGATTTGCAAGTTGTTTTGCATTGCAAATGGTTCGAAGAATGAGAACATATTGGCCGATCTGAAATTGCACAATATTAGAAAAAAAAATTTAAGAAGAAGAAAACTCCAAACCTGTGCCAAAATCGATCCTAGCGCTGGAGACTGTGGTTGGATAGTTTTCACAAGCTGTTCATAAGTGGCACCCGAGAAAAATTGATACGAATTTTGATGAGATACAGCATTTTGTAGATTGTAACTGACACCAAGCTGGCGAGCCGATGATATGTATTCTAAATTCAAAACATATTGCACTTAATGTTGTTTTTATCTTACCATTGAGCAATTTCTCCAGTTCTACTGTAACATTAGTCTCGATACTTGTGAGAACATGGAATGGAATTATGTTCTCAATTTGATAAAAAATATCAAAGTGCAAAATGTTCTTGCTCAGTTTCAAATCCATCCAGCTCAATGTGCTTTCACAGTACCGCGAAACTCTGAAAAAATTTGAAATTTTTGATCCGAAATGGAAGAAAACAAAGTCTTACTTTGGATTTGTCAATCGAATAAACAGAGCAGCAATCTCATTTTTATCAAGCTCTCCAGAACTTTTCGCAAATGCTCGTTCTTCGGATATCCGACTGAAGTAGTCATCCATGGCCACGCTCCAAATACGTTCTCCATTCAAATTCATATAATCGCAGATGTAAAAGAACGAAGATCGCAGAGTTTCCACACTCTCGCAGGTTTTGAGAAGACTTTCTGAAAAAAGAGTAATTTTCAGTGTTTTCAATTTTGGAAGTTCAATCTAGCTCCCGAAACGAACCGATTGACGCTGTTGCTGATGAGTTTGACAATAATTTCTTCAATTCCTTATACAGTTGTCGAATCATCCCTTCTTCTAACAATTCCTAAACTAGTAAATTTGTTTTCAAATATAAAACAAAAATAGAATAGGAAACCTTCGGATTAATTTCAATCGTTCCGACTCTAGTTAACATCATCCTTGAT</canonical>
            <polymorphic>TCTCGGTGACGATTTGCAAGTTGTTTTGCATTGCAAATGGTTCGAAGAATGAGAACATATTGGCCGATCTGAAATTGCACAATATTAGAAAAAAAAATTTAAGAAGAAGAAAACTCCAAACCTGTGCCAAAATCGATCCTAGCGCTGGAGACTGTGGTTGGATAGTTTTCACAAGCTGTTCATAAGTGGCACCCGAGAAAAATTGATACGAATTTTGATGAGATACAGCATTTTGTAGATTGTAACTGACACCAAGCTGGCGAGCCGATGATATGTATTCTAAATTCAAAACATATTGCACTTAATGTTGTTTTTATCTTACCATTGAGCAATTTCTCCAGTTCTACTGTAACATTAGTCTCGATACTTGTGAGAACATGGAATGGAATTATGTTCTCAATTTGATAAAAAATATCAAAGTGCAAAATGTTCTTGCTCAGTTTCAAATCCATCCAGCTCAATGTGCTTTCACAGTACCGCGAAACTCTGAAAAAATTTGMAATTTTTGATCCGAAATGGAAGAAAACAAAGTCTTACTTTGGATTTGTCAATCGAATAAACAGAGCAGCAATCTCATTTTTATCAAGCTCTCCAGAACTTTTCGCAAATGCTCGTTCTTCGGATATCCGACTGAAGTAGTCATCCATGGCCACGCTCCAAATACGTTCTCCATTCAAATTCATATAATCGCAGATGTAAAAGAACGAAGATCGCAGAGTTTCCACACTCTCGCAGGTTTTGAGAAGACTTTCTGAAAAAAGAGTAATTTTCAGTGTTTTCAATTTTGGAAGTTCAATCTAGCTCCCGAAACGAACCGATTGACGCTGTTGCTGATGAGTTTGACAATAATTTCTTCAATTCCTTATACAGTTGTCGAATCATCCCTTCTTCTAACAATTCCTAAACTAGTAAATTTGTTTTCAAATATAAAACAAAAATAGAATAGGAAACCTTCGGATTAATTTCAATCGTTCCGACTCTAGTTAACATCATCCTTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>235 211 176 115 95 89 72 7</canonical_bands>
                <polymorphic_bands>235 211 183 115 95 89 72</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTAGTCTCGATACTTGTGAGAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAGTTCTGGAGAGCTTGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTAGTCTCGATACTTGTGAGAACATGGAATGGAATTATGTTCTCAATTTGATAAAAAATATCAAAGTGCAAAATGTTCTTGCTCAGTTTCAAATCCATCCAGCTCAATGTGCTTTCACAGTACCGCGAAACTCTGAAAAAATTTGAAATTTTTGATCCGAAATGGAAGAAAACAAAGTCTTACTTTGGATTTGTCAATCGAATAAACAGAGCAGCAATCTCATTTTTATCAAGCTCTCCAGAACTTTT</canonical_amplicon>
		<polymorphic_amplicon>CATTAGTCTCGATACTTGTGAGAACATGGAATGGAATTATGTTCTCAATTTGATAAAAAATATCAAAGTGCAAAATGTTCTTGCTCAGTTTCAAATCCATCCAGCTCAATGTGCTTTCACAGTACCGCGAAACTCTGAAAAAATTTGMAATTTTTGATCCGAAATGGAAGAAAACAAAGTCTTACTTTGGATTTGTCAATCGAATAAACAGAGCAGCAATCTCATTTTTATCAAGCTCTCCAGAACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7185</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>236764</contig_pos>
        <strand>+</strand>
        <context>AAATTGAATA[A/T]TAAGTTCTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCATCATTTTTCTTTCTTTAAAATTCTTTATTGCCGATTAAAATTGAATA</left_flank>
        <right_flank>TAAGTTCTATGAATTCATTTAGGGAAGACTGAAACTTCAATTCCACCAGT</right_flank>
        <qual_score>149</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTGGCATTTCGTTCACCGTAAAACATGTGTTAGAAGGGCCGGCCCTTCTATTGCTCCAAGGTACCTCCGAAGGCCCCTTTTATTACAAAGGCCCTTCAATTAGGGGGGCCTTTCATTCGCCTTGATTTTTTTTCCTATTTTCCTTATAAAAATTGATGAAAAATCTTTCAGGATAACCCGAAACGTATCAACCACATCTGGGTTCTGTGCCGCGACGTCGAAGAATACAATCCAGCTATCGCATGGAAACTCCTCGAAGTGCACATGCAGGAAACGCCACTTGCAGTTTAAAGCTAATTGATATTTCGTGATTTCTATTTTCATGTCTTTTTTTCAATGTCTTTTTTTCATAGTTCATTTTATTATCTCTTCTTTTAGGTTAGATTTTGTTCCTCTTGTTTTGTTGTTATCGTAACGGGTGCAGCTATCTTTTCCTGTTTTCTTTAATTCATCATTTTTCTTTCTTTAAAATTCTTTATTGCCGATTAAAATTGAATATTAAGTTCTATGAATTCATTTAGGGAAGACTGAAACTTCAATTCCACCAGTTTCAGTAATCGAATCGATGTAGACGAATTGAGTGTAGTGCTTCAAAAGGGATTTGATCGACGAGAAAATCGGCTCATTCGATATTTTCGTGATAGAGAAGTGCCCGAGTTGAAAGAGGGCTCGAGAAGTGGGTCCTTCTTTTTTGATGATTGGGTAGTGGCTGAAAATTGAAACTTAAAGTTGATTTGGAATGGATGCATAATAATTACTGATATCGATTGCGGGAATTCAGATAACACACGAAAAGATTCAAAGAAATATTTGAATCCTTTTGTGGTTTAGAAGAATCTAGTTGAACGTCGATGCGGTAGTAGGTAGCAAATTGAGCAGGGATCACAACTTCCTGAAAAATTGAATTATCGATTTTACAAGACCATCTGTGGACCAAAAATTTGAATTCATCATTCTTCCACTGGGTTCCCAAGAAATGGGTCAAAAAGGCGCCCCAGC</canonical>
            <polymorphic>AGTGGCATTTCGTTCACCGTAAAACATGTGTTAGAAGGGCCGGCCCTTCTATTGCTCCAAGGTACCTCCGAAGGCCCCTTTTATTACAAAGGCCCTTCAATTAGGGGGGCCTTTCATTCGCCTTGATTTTTTTTCCTATTTTCCTTATAAAAATTGATGAAAAATCTTTCAGGATAACCCGAAACGTATCAACCACATCTGGGTTCTGTGCCGCGACGTCGAAGAATACAATCCAGCTATCGCATGGAAACTCCTCGAAGTGCACATGCAGGAAACGCCACTTGCAGTTTAAAGCTAATTGATATTTCGTGATTTCTATTTTCATGTCTTTTTTTCAATGTCTTTTTTTCATAGTTCATTTTATTATCTCTTCTTTTAGGTTAGATTTTGTTCCTCTTGTTTTGTTGTTATCGTAACGGGTGCAGCTATCTTTTCCTGTTTTCTTTAATTCATCATTTTTCTTTCTTTAAAATTCTTTATTGCCGATTAAAATTGAATAWTAAGTTCTATGAATTCATTTAGGGAAGACTGAAACTTCAATTCCACCAGTTTCAGTAATCGAATCGATGTAGACGAATTGAGTGTAGTGCTTCAAAAGGGATTTGATCGACGAGAAAATCGGCTCATTCGATATTTTCGTGATAGAGAAGTGCCCGAGTTGAAAGAGGGCTCGAGAAGTGGGTCCTTCTTTTTTGATGATTGGGTAGTGGCTGAAAATTGAAACTTAAAGTTGATTTGGAATGGATGCATAATAATTACTGATATCGATTGCGGGAATTCAGATAACACACGAAAAGATTCAAAGAAATATTTGAATCCTTTTGTGGTTTAGAAGAATCTAGTTGAACGTCGATGCGGTAGTAGGTAGCAAATTGAGCAGGGATCACAACTTCCTGAAAAATTGAATTATCGATTTTACAAGACCATCTGTGGACCAAAAATTTGAATTCATCATTCTTCCACTGGGTTCCCAAGAAATGGGTCAAAAAGGCGCCCCAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>289 275 225 156 22 20 13</canonical_bands>
                <polymorphic_bands>289 275 238 156 22 20</polymorphic_bands>
            </assay>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>498 311 191</canonical_bands>
                <polymorphic_bands>809 191</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTGATTTCTATTTTCATGTCTT</pcr_primer_p1>
		<pcr_primer_p2>TACTGAAACTGGTGGAATTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTGATTTCTATTTTCATGTCTTTTTTTCAATGTCTTTTTTTCATAGTTCATTTTATTATCTCTTCTTTTAGGTTAGATTTTGTTCCTCTTGTTTTGTTGTTATCGTAACGGGTGCAGCTATCTTTTCCTGTTTTCTTTAATTCATCATTTTTCTTTCTTTAAAATTCTTTATTGCCGATTAAAATTGAATATTAAGTTCTATGAATTCATTTAGGGAAGACTGAAACTTCAATTCCACCAGTTTCAGTA</canonical_amplicon>
		<polymorphic_amplicon>CGTGATTTCTATTTTCATGTCTTTTTTTCAATGTCTTTTTTTCATAGTTCATTTTATTATCTCTTCTTTTAGGTTAGATTTTGTTCCTCTTGTTTTGTTGTTATCGTAACGGGTGCAGCTATCTTTTCCTGTTTTCTTTAATTCATCATTTTTCTTTCTTTAAAATTCTTTATTGCCGATTAAAATTGAATAWTAAGTTCTATGAATTCATTTAGGGAAGACTGAAACTTCAATTCCACCAGTTTCAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7187</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>239644</contig_pos>
        <strand>+</strand>
        <context>GAGAKWYTWM[A/C]AYTGAGCACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTAA</left_flank>
        <right_flank>AGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAAATTTAGGTTACGGTAGTTGTCCTTTTGGGACTACGGCCACCGGCAATACTTTTCAGTTAAATACCTTTCCAACACCAAGATATTTGAAAATCCTAATTCTCATAGTATCTTGCCATATCCATCAAAATATATTGTAATATTTTTTTCTGAAAACATCGAACCAAATGTTTGATTTTTCAAAACTATTAGGAAACTGAGGAATTCCAGTATAATTCCAGTATGATTCCATTATAATTCCAGTAAAATTCTTGTATAAAATGTTTTCTGTACTTCAAAATATTGGAAGATTTGGGGATTCATCTCTTCCTCCCACACCCATAAGAATTTTGCAAATCTTTGTCAAAAAAGTATTTTCAATGACTTTTTCATCTTCTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTCCTTTTCTCTGAGATCTCTTTTTACACATTGCGACAGAGGTGCTCTAGAGTCGAGTACCCTCCTACTACTCAGTCCAAGAAAAACGAGATAGTACTGATAGACAAGAGTTCTAGGCACTTTGACAGTTTGCCAAAGTTCACAGATTGTCCCTTCAAAGAAGAGTGGCGGGAGGTCTTCGAAGAGAAGCGCCCCCGGAGAAGATACGTTAAGAGATAGTGAGTGAGAATCAAAGAGGGCGGATATAGAAGACATAGAACGGATGAAAACACGTTCGGGTGCACACGGAAGAAGAAGAAGAAGAAGCTCCGGAGGGAAATAAAAAGAAAGAAGATCGATTGCGAGGGAGGAAATGGGAGTGAGAAATATAGAGATAG</canonical>
            <polymorphic>AATAAATTTAGGTTACGGTAGTTGTCCTTTTGGGACTACGGCCACCGGCAATACTTTTCAGTTAAATACCTTTCCAACACCAAGATATTTGAAAATCCTAATTCTCATAGTATCTTGCCATATCCATCAAAATATATTGTAATATTTTTTTCTGAAAACATCGAACCAAATGTTTGATTTTTCAAAACTATTAGGAAACTGAGGAATTCCAGTATAATTCCAGTATGATTCCATTATAATTCCAGTAAAATTCTTGTATAAAATGTTTTCTGTACTTCAAAATATTGGAAGATTTGGGGATTCATCTCTTCCTCCCACACCCATAAGAATTTTGCAAATCTTTGTCAAAAAAGTATTTTCAATGACTTTTTCATCTTCTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTAAMAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTCCTTTTCTCTGAGATCTCTTTTTACACATTGCGACAGAGGTGCTCTAGAGTCGAGTACCCTCCTACTACTCAGTCCAAGAAAAACGAGATAGTACTGATAGACAAGAGTTCTAGGCACTTTGACAGTTTGCCAAAGTTCACAGATTGTCCCTTCAAAGAAGAGTGGCGGGAGGTCTTCGAAGAGAAGCGCCCCCGGAGAAGATACGTTAAGAGATAGTGAGTGAGAATCAAAGAGGGCGGATATAGAAGACATAGAACGGATGAAAACACGTTCGGGTGCACACGGAAGAAGAAGAAGAAGAAGCTCCGGAGGGAAATAAAAAGAAAGAAGATCGATTGCGAGGGAGGAAATGGGAGTGAGAAATATAGAGATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTATTCTTCTCTTGCTCAACTG</pcr_primer_p1>
		<pcr_primer_p2>GAGCAACTCATATCTCTGTGTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTC</canonical_amplicon>
		<polymorphic_amplicon>CTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTAAMAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7188</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>239643</contig_pos>
        <strand>+</strand>
        <context>CGAGAKWYTW[A/C]MAYTGAGCAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTA</left_flank>
        <right_flank>AAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATAAATTTAGGTTACGGTAGTTGTCCTTTTGGGACTACGGCCACCGGCAATACTTTTCAGTTAAATACCTTTCCAACACCAAGATATTTGAAAATCCTAATTCTCATAGTATCTTGCCATATCCATCAAAATATATTGTAATATTTTTTTCTGAAAACATCGAACCAAATGTTTGATTTTTCAAAACTATTAGGAAACTGAGGAATTCCAGTATAATTCCAGTATGATTCCATTATAATTCCAGTAAAATTCTTGTATAAAATGTTTTCTGTACTTCAAAATATTGGAAGATTTGGGGATTCATCTCTTCCTCCCACACCCATAAGAATTTTGCAAATCTTTGTCAAAAAAGTATTTTCAATGACTTTTTCATCTTCTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTCCTTTTCTCTGAGATCTCTTTTTACACATTGCGACAGAGGTGCTCTAGAGTCGAGTACCCTCCTACTACTCAGTCCAAGAAAAACGAGATAGTACTGATAGACAAGAGTTCTAGGCACTTTGACAGTTTGCCAAAGTTCACAGATTGTCCCTTCAAAGAAGAGTGGCGGGAGGTCTTCGAAGAGAAGCGCCCCCGGAGAAGATACGTTAAGAGATAGTGAGTGAGAATCAAAGAGGGCGGATATAGAAGACATAGAACGGATGAAAACACGTTCGGGTGCACACGGAAGAAGAAGAAGAAGAAGCTCCGGAGGGAAATAAAAAGAAAGAAGATCGATTGCGAGGGAGGAAATGGGAGTGAGAAATATAGAGATA</canonical>
            <polymorphic>AAATAAATTTAGGTTACGGTAGTTGTCCTTTTGGGACTACGGCCACCGGCAATACTTTTCAGTTAAATACCTTTCCAACACCAAGATATTTGAAAATCCTAATTCTCATAGTATCTTGCCATATCCATCAAAATATATTGTAATATTTTTTTCTGAAAACATCGAACCAAATGTTTGATTTTTCAAAACTATTAGGAAACTGAGGAATTCCAGTATAATTCCAGTATGATTCCATTATAATTCCAGTAAAATTCTTGTATAAAATGTTTTCTGTACTTCAAAATATTGGAAGATTTGGGGATTCATCTCTTCCTCCCACACCCATAAGAATTTTGCAAATCTTTGTCAAAAAAGTATTTTCAATGACTTTTTCATCTTCTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTAMAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTCCTTTTCTCTGAGATCTCTTTTTACACATTGCGACAGAGGTGCTCTAGAGTCGAGTACCCTCCTACTACTCAGTCCAAGAAAAACGAGATAGTACTGATAGACAAGAGTTCTAGGCACTTTGACAGTTTGCCAAAGTTCACAGATTGTCCCTTCAAAGAAGAGTGGCGGGAGGTCTTCGAAGAGAAGCGCCCCCGGAGAAGATACGTTAAGAGATAGTGAGTGAGAATCAAAGAGGGCGGATATAGAAGACATAGAACGGATGAAAACACGTTCGGGTGCACACGGAAGAAGAAGAAGAAGAAGCTCCGGAGGGAAATAAAAAGAAAGAAGATCGATTGCGAGGGAGGAAATGGGAGTGAGAAATATAGAGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTATTCTTCTCTTGCTCAACTG</pcr_primer_p1>
		<pcr_primer_p2>GAGCAACTCATATCTCTGTGTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTC</canonical_amplicon>
		<polymorphic_amplicon>CTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTAMAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7189</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>239642</contig_pos>
        <strand>+</strand>
        <context>ACGAGAKWYT[A/T]MMAYTGAGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACT</left_flank>
        <right_flank>AAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATAAATTTAGGTTACGGTAGTTGTCCTTTTGGGACTACGGCCACCGGCAATACTTTTCAGTTAAATACCTTTCCAACACCAAGATATTTGAAAATCCTAATTCTCATAGTATCTTGCCATATCCATCAAAATATATTGTAATATTTTTTTCTGAAAACATCGAACCAAATGTTTGATTTTTCAAAACTATTAGGAAACTGAGGAATTCCAGTATAATTCCAGTATGATTCCATTATAATTCCAGTAAAATTCTTGTATAAAATGTTTTCTGTACTTCAAAATATTGGAAGATTTGGGGATTCATCTCTTCCTCCCACACCCATAAGAATTTTGCAAATCTTTGTCAAAAAAGTATTTTCAATGACTTTTTCATCTTCTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTCCTTTTCTCTGAGATCTCTTTTTACACATTGCGACAGAGGTGCTCTAGAGTCGAGTACCCTCCTACTACTCAGTCCAAGAAAAACGAGATAGTACTGATAGACAAGAGTTCTAGGCACTTTGACAGTTTGCCAAAGTTCACAGATTGTCCCTTCAAAGAAGAGTGGCGGGAGGTCTTCGAAGAGAAGCGCCCCCGGAGAAGATACGTTAAGAGATAGTGAGTGAGAATCAAAGAGGGCGGATATAGAAGACATAGAACGGATGAAAACACGTTCGGGTGCACACGGAAGAAGAAGAAGAAGAAGCTCCGGAGGGAAATAAAAAGAAAGAAGATCGATTGCGAGGGAGGAAATGGGAGTGAGAAATATAGAGAT</canonical>
            <polymorphic>GAAATAAATTTAGGTTACGGTAGTTGTCCTTTTGGGACTACGGCCACCGGCAATACTTTTCAGTTAAATACCTTTCCAACACCAAGATATTTGAAAATCCTAATTCTCATAGTATCTTGCCATATCCATCAAAATATATTGTAATATTTTTTTCTGAAAACATCGAACCAAATGTTTGATTTTTCAAAACTATTAGGAAACTGAGGAATTCCAGTATAATTCCAGTATGATTCCATTATAATTCCAGTAAAATTCTTGTATAAAATGTTTTCTGTACTTCAAAATATTGGAAGATTTGGGGATTCATCTCTTCCTCCCACACCCATAAGAATTTTGCAAATCTTTGTCAAAAAAGTATTTTCAATGACTTTTTCATCTTCTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTWAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTCCTTTTCTCTGAGATCTCTTTTTACACATTGCGACAGAGGTGCTCTAGAGTCGAGTACCCTCCTACTACTCAGTCCAAGAAAAACGAGATAGTACTGATAGACAAGAGTTCTAGGCACTTTGACAGTTTGCCAAAGTTCACAGATTGTCCCTTCAAAGAAGAGTGGCGGGAGGTCTTCGAAGAGAAGCGCCCCCGGAGAAGATACGTTAAGAGATAGTGAGTGAGAATCAAAGAGGGCGGATATAGAAGACATAGAACGGATGAAAACACGTTCGGGTGCACACGGAAGAAGAAGAAGAAGAAGCTCCGGAGGGAAATAAAAAGAAAGAAGATCGATTGCGAGGGAGGAAATGGGAGTGAGAAATATAGAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTATTCTTCTCTTGCTCAACTG</pcr_primer_p1>
		<pcr_primer_p2>GAGCAACTCATATCTCTGTGTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTC</canonical_amplicon>
		<polymorphic_amplicon>CTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTWAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7190</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>239640</contig_pos>
        <strand>+</strand>
        <context>CRACGAGAKW[C/T]TWMMAYTGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGA</left_flank>
        <right_flank>TAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGAAATAAATTTAGGTTACGGTAGTTGTCCTTTTGGGACTACGGCCACCGGCAATACTTTTCAGTTAAATACCTTTCCAACACCAAGATATTTGAAAATCCTAATTCTCATAGTATCTTGCCATATCCATCAAAATATATTGTAATATTTTTTTCTGAAAACATCGAACCAAATGTTTGATTTTTCAAAACTATTAGGAAACTGAGGAATTCCAGTATAATTCCAGTATGATTCCATTATAATTCCAGTAAAATTCTTGTATAAAATGTTTTCTGTACTTCAAAATATTGGAAGATTTGGGGATTCATCTCTTCCTCCCACACCCATAAGAATTTTGCAAATCTTTGTCAAAAAAGTATTTTCAATGACTTTTTCATCTTCTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTCCTTTTCTCTGAGATCTCTTTTTACACATTGCGACAGAGGTGCTCTAGAGTCGAGTACCCTCCTACTACTCAGTCCAAGAAAAACGAGATAGTACTGATAGACAAGAGTTCTAGGCACTTTGACAGTTTGCCAAAGTTCACAGATTGTCCCTTCAAAGAAGAGTGGCGGGAGGTCTTCGAAGAGAAGCGCCCCCGGAGAAGATACGTTAAGAGATAGTGAGTGAGAATCAAAGAGGGCGGATATAGAAGACATAGAACGGATGAAAACACGTTCGGGTGCACACGGAAGAAGAAGAAGAAGAAGCTCCGGAGGGAAATAAAAAGAAAGAAGATCGATTGCGAGGGAGGAAATGGGAGTGAGAAATATAGAG</canonical>
            <polymorphic>CGGAAATAAATTTAGGTTACGGTAGTTGTCCTTTTGGGACTACGGCCACCGGCAATACTTTTCAGTTAAATACCTTTCCAACACCAAGATATTTGAAAATCCTAATTCTCATAGTATCTTGCCATATCCATCAAAATATATTGTAATATTTTTTTCTGAAAACATCGAACCAAATGTTTGATTTTTCAAAACTATTAGGAAACTGAGGAATTCCAGTATAATTCCAGTATGATTCCATTATAATTCCAGTAAAATTCTTGTATAAAATGTTTTCTGTACTTCAAAATATTGGAAGATTTGGGGATTCATCTCTTCCTCCCACACCCATAAGAATTTTGCAAATCTTTGTCAAAAAAGTATTTTCAATGACTTTTTCATCTTCTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGAYTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTCCTTTTCTCTGAGATCTCTTTTTACACATTGCGACAGAGGTGCTCTAGAGTCGAGTACCCTCCTACTACTCAGTCCAAGAAAAACGAGATAGTACTGATAGACAAGAGTTCTAGGCACTTTGACAGTTTGCCAAAGTTCACAGATTGTCCCTTCAAAGAAGAGTGGCGGGAGGTCTTCGAAGAGAAGCGCCCCCGGAGAAGATACGTTAAGAGATAGTGAGTGAGAATCAAAGAGGGCGGATATAGAAGACATAGAACGGATGAAAACACGTTCGGGTGCACACGGAAGAAGAAGAAGAAGAAGCTCCGGAGGGAAATAAAAAGAAAGAAGATCGATTGCGAGGGAGGAAATGGGAGTGAGAAATATAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTATTCTTCTCTTGCTCAACTG</pcr_primer_p1>
		<pcr_primer_p2>GAGCAACTCATATCTCTGTGTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTC</canonical_amplicon>
		<polymorphic_amplicon>CTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGAYTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7191</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>239639</contig_pos>
        <strand>+</strand>
        <context>ACRACGAGAK[A/T]YTWMMAYTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAG</left_flank>
        <right_flank>CTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGAAATAAATTTAGGTTACGGTAGTTGTCCTTTTGGGACTACGGCCACCGGCAATACTTTTCAGTTAAATACCTTTCCAACACCAAGATATTTGAAAATCCTAATTCTCATAGTATCTTGCCATATCCATCAAAATATATTGTAATATTTTTTTCTGAAAACATCGAACCAAATGTTTGATTTTTCAAAACTATTAGGAAACTGAGGAATTCCAGTATAATTCCAGTATGATTCCATTATAATTCCAGTAAAATTCTTGTATAAAATGTTTTCTGTACTTCAAAATATTGGAAGATTTGGGGATTCATCTCTTCCTCCCACACCCATAAGAATTTTGCAAATCTTTGTCAAAAAAGTATTTTCAATGACTTTTTCATCTTCTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTCCTTTTCTCTGAGATCTCTTTTTACACATTGCGACAGAGGTGCTCTAGAGTCGAGTACCCTCCTACTACTCAGTCCAAGAAAAACGAGATAGTACTGATAGACAAGAGTTCTAGGCACTTTGACAGTTTGCCAAAGTTCACAGATTGTCCCTTCAAAGAAGAGTGGCGGGAGGTCTTCGAAGAGAAGCGCCCCCGGAGAAGATACGTTAAGAGATAGTGAGTGAGAATCAAAGAGGGCGGATATAGAAGACATAGAACGGATGAAAACACGTTCGGGTGCACACGGAAGAAGAAGAAGAAGAAGCTCCGGAGGGAAATAAAAAGAAAGAAGATCGATTGCGAGGGAGGAAATGGGAGTGAGAAATATAGA</canonical>
            <polymorphic>TCGGAAATAAATTTAGGTTACGGTAGTTGTCCTTTTGGGACTACGGCCACCGGCAATACTTTTCAGTTAAATACCTTTCCAACACCAAGATATTTGAAAATCCTAATTCTCATAGTATCTTGCCATATCCATCAAAATATATTGTAATATTTTTTTCTGAAAACATCGAACCAAATGTTTGATTTTTCAAAACTATTAGGAAACTGAGGAATTCCAGTATAATTCCAGTATGATTCCATTATAATTCCAGTAAAATTCTTGTATAAAATGTTTTCTGTACTTCAAAATATTGGAAGATTTGGGGATTCATCTCTTCCTCCCACACCCATAAGAATTTTGCAAATCTTTGTCAAAAAAGTATTTTCAATGACTTTTTCATCTTCTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGWCTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTCCTTTTCTCTGAGATCTCTTTTTACACATTGCGACAGAGGTGCTCTAGAGTCGAGTACCCTCCTACTACTCAGTCCAAGAAAAACGAGATAGTACTGATAGACAAGAGTTCTAGGCACTTTGACAGTTTGCCAAAGTTCACAGATTGTCCCTTCAAAGAAGAGTGGCGGGAGGTCTTCGAAGAGAAGCGCCCCCGGAGAAGATACGTTAAGAGATAGTGAGTGAGAATCAAAGAGGGCGGATATAGAAGACATAGAACGGATGAAAACACGTTCGGGTGCACACGGAAGAAGAAGAAGAAGAAGCTCCGGAGGGAAATAAAAAGAAAGAAGATCGATTGCGAGGGAGGAAATGGGAGTGAGAAATATAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTATTCTTCTCTTGCTCAACTG</pcr_primer_p1>
		<pcr_primer_p2>GAGCAACTCATATCTCTGTGTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTC</canonical_amplicon>
		<polymorphic_amplicon>CTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGWCTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7192</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>239638</contig_pos>
        <strand>+</strand>
        <context>CACRACGAGA[G/T]WYTWMMAYTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGA</left_flank>
        <right_flank>ACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGGAAATAAATTTAGGTTACGGTAGTTGTCCTTTTGGGACTACGGCCACCGGCAATACTTTTCAGTTAAATACCTTTCCAACACCAAGATATTTGAAAATCCTAATTCTCATAGTATCTTGCCATATCCATCAAAATATATTGTAATATTTTTTTCTGAAAACATCGAACCAAATGTTTGATTTTTCAAAACTATTAGGAAACTGAGGAATTCCAGTATAATTCCAGTATGATTCCATTATAATTCCAGTAAAATTCTTGTATAAAATGTTTTCTGTACTTCAAAATATTGGAAGATTTGGGGATTCATCTCTTCCTCCCACACCCATAAGAATTTTGCAAATCTTTGTCAAAAAAGTATTTTCAATGACTTTTTCATCTTCTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTCCTTTTCTCTGAGATCTCTTTTTACACATTGCGACAGAGGTGCTCTAGAGTCGAGTACCCTCCTACTACTCAGTCCAAGAAAAACGAGATAGTACTGATAGACAAGAGTTCTAGGCACTTTGACAGTTTGCCAAAGTTCACAGATTGTCCCTTCAAAGAAGAGTGGCGGGAGGTCTTCGAAGAGAAGCGCCCCCGGAGAAGATACGTTAAGAGATAGTGAGTGAGAATCAAAGAGGGCGGATATAGAAGACATAGAACGGATGAAAACACGTTCGGGTGCACACGGAAGAAGAAGAAGAAGAAGCTCCGGAGGGAAATAAAAAGAAAGAAGATCGATTGCGAGGGAGGAAATGGGAGTGAGAAATATAG</canonical>
            <polymorphic>CTCGGAAATAAATTTAGGTTACGGTAGTTGTCCTTTTGGGACTACGGCCACCGGCAATACTTTTCAGTTAAATACCTTTCCAACACCAAGATATTTGAAAATCCTAATTCTCATAGTATCTTGCCATATCCATCAAAATATATTGTAATATTTTTTTCTGAAAACATCGAACCAAATGTTTGATTTTTCAAAACTATTAGGAAACTGAGGAATTCCAGTATAATTCCAGTATGATTCCATTATAATTCCAGTAAAATTCTTGTATAAAATGTTTTCTGTACTTCAAAATATTGGAAGATTTGGGGATTCATCTCTTCCTCCCACACCCATAAGAATTTTGCAAATCTTTGTCAAAAAAGTATTTTCAATGACTTTTTCATCTTCTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAKACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTCCTTTTCTCTGAGATCTCTTTTTACACATTGCGACAGAGGTGCTCTAGAGTCGAGTACCCTCCTACTACTCAGTCCAAGAAAAACGAGATAGTACTGATAGACAAGAGTTCTAGGCACTTTGACAGTTTGCCAAAGTTCACAGATTGTCCCTTCAAAGAAGAGTGGCGGGAGGTCTTCGAAGAGAAGCGCCCCCGGAGAAGATACGTTAAGAGATAGTGAGTGAGAATCAAAGAGGGCGGATATAGAAGACATAGAACGGATGAAAACACGTTCGGGTGCACACGGAAGAAGAAGAAGAAGAAGCTCCGGAGGGAAATAAAAAGAAAGAAGATCGATTGCGAGGGAGGAAATGGGAGTGAGAAATATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTATTCTTCTCTTGCTCAACTG</pcr_primer_p1>
		<pcr_primer_p2>GAGCAACTCATATCTCTGTGTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTC</canonical_amplicon>
		<polymorphic_amplicon>CTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAKACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7193</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>239631</contig_pos>
        <strand>+</strand>
        <context>AAGTKMSCAC[A/G]ACGAGAKWYT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCAC</left_flank>
        <right_flank>ACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAACTCGGAAATAAATTTAGGTTACGGTAGTTGTCCTTTTGGGACTACGGCCACCGGCAATACTTTTCAGTTAAATACCTTTCCAACACCAAGATATTTGAAAATCCTAATTCTCATAGTATCTTGCCATATCCATCAAAATATATTGTAATATTTTTTTCTGAAAACATCGAACCAAATGTTTGATTTTTCAAAACTATTAGGAAACTGAGGAATTCCAGTATAATTCCAGTATGATTCCATTATAATTCCAGTAAAATTCTTGTATAAAATGTTTTCTGTACTTCAAAATATTGGAAGATTTGGGGATTCATCTCTTCCTCCCACACCCATAAGAATTTTGCAAATCTTTGTCAAAAAAGTATTTTCAATGACTTTTTCATCTTCTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTCCTTTTCTCTGAGATCTCTTTTTACACATTGCGACAGAGGTGCTCTAGAGTCGAGTACCCTCCTACTACTCAGTCCAAGAAAAACGAGATAGTACTGATAGACAAGAGTTCTAGGCACTTTGACAGTTTGCCAAAGTTCACAGATTGTCCCTTCAAAGAAGAGTGGCGGGAGGTCTTCGAAGAGAAGCGCCCCCGGAGAAGATACGTTAAGAGATAGTGAGTGAGAATCAAAGAGGGCGGATATAGAAGACATAGAACGGATGAAAACACGTTCGGGTGCACACGGAAGAAGAAGAAGAAGAAGCTCCGGAGGGAAATAAAAAGAAAGAAGATCGATTGCGAGGGAGGAAATGGGAGTGAGA</canonical>
            <polymorphic>AAAAAAACTCGGAAATAAATTTAGGTTACGGTAGTTGTCCTTTTGGGACTACGGCCACCGGCAATACTTTTCAGTTAAATACCTTTCCAACACCAAGATATTTGAAAATCCTAATTCTCATAGTATCTTGCCATATCCATCAAAATATATTGTAATATTTTTTTCTGAAAACATCGAACCAAATGTTTGATTTTTCAAAACTATTAGGAAACTGAGGAATTCCAGTATAATTCCAGTATGATTCCATTATAATTCCAGTAAAATTCTTGTATAAAATGTTTTCTGTACTTCAAAATATTGGAAGATTTGGGGATTCATCTCTTCCTCCCACACCCATAAGAATTTTGCAAATCTTTGTCAAAAAAGTATTTTCAATGACTTTTTCATCTTCTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACRACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTCCTTTTCTCTGAGATCTCTTTTTACACATTGCGACAGAGGTGCTCTAGAGTCGAGTACCCTCCTACTACTCAGTCCAAGAAAAACGAGATAGTACTGATAGACAAGAGTTCTAGGCACTTTGACAGTTTGCCAAAGTTCACAGATTGTCCCTTCAAAGAAGAGTGGCGGGAGGTCTTCGAAGAGAAGCGCCCCCGGAGAAGATACGTTAAGAGATAGTGAGTGAGAATCAAAGAGGGCGGATATAGAAGACATAGAACGGATGAAAACACGTTCGGGTGCACACGGAAGAAGAAGAAGAAGAAGCTCCGGAGGGAAATAAAAAGAAAGAAGATCGATTGCGAGGGAGGAAATGGGAGTGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>503 474 23</canonical_bands>
                <polymorphic_bands>526 474</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTATTCTTCTCTTGCTCAACTG</pcr_primer_p1>
		<pcr_primer_p2>GAGCAACTCATATCTCTGTGTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTC</canonical_amplicon>
		<polymorphic_amplicon>CTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACRACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7194</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>239627</contig_pos>
        <strand>+</strand>
        <context>CTCTAAGTKM[C/G]CACRACGAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGA</left_flank>
        <right_flank>CACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAAAAAAAACTCGGAAATAAATTTAGGTTACGGTAGTTGTCCTTTTGGGACTACGGCCACCGGCAATACTTTTCAGTTAAATACCTTTCCAACACCAAGATATTTGAAAATCCTAATTCTCATAGTATCTTGCCATATCCATCAAAATATATTGTAATATTTTTTTCTGAAAACATCGAACCAAATGTTTGATTTTTCAAAACTATTAGGAAACTGAGGAATTCCAGTATAATTCCAGTATGATTCCATTATAATTCCAGTAAAATTCTTGTATAAAATGTTTTCTGTACTTCAAAATATTGGAAGATTTGGGGATTCATCTCTTCCTCCCACACCCATAAGAATTTTGCAAATCTTTGTCAAAAAAGTATTTTCAATGACTTTTTCATCTTCTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTCCTTTTCTCTGAGATCTCTTTTTACACATTGCGACAGAGGTGCTCTAGAGTCGAGTACCCTCCTACTACTCAGTCCAAGAAAAACGAGATAGTACTGATAGACAAGAGTTCTAGGCACTTTGACAGTTTGCCAAAGTTCACAGATTGTCCCTTCAAAGAAGAGTGGCGGGAGGTCTTCGAAGAGAAGCGCCCCCGGAGAAGATACGTTAAGAGATAGTGAGTGAGAATCAAAGAGGGCGGATATAGAAGACATAGAACGGATGAAAACACGTTCGGGTGCACACGGAAGAAGAAGAAGAAGAAGCTCCGGAGGGAAATAAAAAGAAAGAAGATCGATTGCGAGGGAGGAAATGGGAGT</canonical>
            <polymorphic>GAGAAAAAAAACTCGGAAATAAATTTAGGTTACGGTAGTTGTCCTTTTGGGACTACGGCCACCGGCAATACTTTTCAGTTAAATACCTTTCCAACACCAAGATATTTGAAAATCCTAATTCTCATAGTATCTTGCCATATCCATCAAAATATATTGTAATATTTTTTTCTGAAAACATCGAACCAAATGTTTGATTTTTCAAAACTATTAGGAAACTGAGGAATTCCAGTATAATTCCAGTATGATTCCATTATAATTCCAGTAAAATTCTTGTATAAAATGTTTTCTGTACTTCAAAATATTGGAAGATTTGGGGATTCATCTCTTCCTCCCACACCCATAAGAATTTTGCAAATCTTTGTCAAAAAAGTATTTTCAATGACTTTTTCATCTTCTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGASCACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTCCTTTTCTCTGAGATCTCTTTTTACACATTGCGACAGAGGTGCTCTAGAGTCGAGTACCCTCCTACTACTCAGTCCAAGAAAAACGAGATAGTACTGATAGACAAGAGTTCTAGGCACTTTGACAGTTTGCCAAAGTTCACAGATTGTCCCTTCAAAGAAGAGTGGCGGGAGGTCTTCGAAGAGAAGCGCCCCCGGAGAAGATACGTTAAGAGATAGTGAGTGAGAATCAAAGAGGGCGGATATAGAAGACATAGAACGGATGAAAACACGTTCGGGTGCACACGGAAGAAGAAGAAGAAGAAGCTCCGGAGGGAAATAAAAAGAAAGAAGATCGATTGCGAGGGAGGAAATGGGAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 237 105 77 56 23</canonical_bands>
                <polymorphic_bands>525 237 105 77 56</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>502 237 105 77 56 23</canonical_bands>
                <polymorphic_bands>525 237 105 77 56</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTATTCTTCTCTTGCTCAACTG</pcr_primer_p1>
		<pcr_primer_p2>GAGCAACTCATATCTCTGTGTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTC</canonical_amplicon>
		<polymorphic_amplicon>CTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGASCACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7195</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>239626</contig_pos>
        <strand>+</strand>
        <context>TCTCTAAGTK[A/C]SCACRACGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTG</left_flank>
        <right_flank>GCACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAGAAAAAAAACTCGGAAATAAATTTAGGTTACGGTAGTTGTCCTTTTGGGACTACGGCCACCGGCAATACTTTTCAGTTAAATACCTTTCCAACACCAAGATATTTGAAAATCCTAATTCTCATAGTATCTTGCCATATCCATCAAAATATATTGTAATATTTTTTTCTGAAAACATCGAACCAAATGTTTGATTTTTCAAAACTATTAGGAAACTGAGGAATTCCAGTATAATTCCAGTATGATTCCATTATAATTCCAGTAAAATTCTTGTATAAAATGTTTTCTGTACTTCAAAATATTGGAAGATTTGGGGATTCATCTCTTCCTCCCACACCCATAAGAATTTTGCAAATCTTTGTCAAAAAAGTATTTTCAATGACTTTTTCATCTTCTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTCCTTTTCTCTGAGATCTCTTTTTACACATTGCGACAGAGGTGCTCTAGAGTCGAGTACCCTCCTACTACTCAGTCCAAGAAAAACGAGATAGTACTGATAGACAAGAGTTCTAGGCACTTTGACAGTTTGCCAAAGTTCACAGATTGTCCCTTCAAAGAAGAGTGGCGGGAGGTCTTCGAAGAGAAGCGCCCCCGGAGAAGATACGTTAAGAGATAGTGAGTGAGAATCAAAGAGGGCGGATATAGAAGACATAGAACGGATGAAAACACGTTCGGGTGCACACGGAAGAAGAAGAAGAAGAAGCTCCGGAGGGAAATAAAAAGAAAGAAGATCGATTGCGAGGGAGGAAATGGGAG</canonical>
            <polymorphic>CGAGAAAAAAAACTCGGAAATAAATTTAGGTTACGGTAGTTGTCCTTTTGGGACTACGGCCACCGGCAATACTTTTCAGTTAAATACCTTTCCAACACCAAGATATTTGAAAATCCTAATTCTCATAGTATCTTGCCATATCCATCAAAATATATTGTAATATTTTTTTCTGAAAACATCGAACCAAATGTTTGATTTTTCAAAACTATTAGGAAACTGAGGAATTCCAGTATAATTCCAGTATGATTCCATTATAATTCCAGTAAAATTCTTGTATAAAATGTTTTCTGTACTTCAAAATATTGGAAGATTTGGGGATTCATCTCTTCCTCCCACACCCATAAGAATTTTGCAAATCTTTGTCAAAAAAGTATTTTCAATGACTTTTTCATCTTCTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGMGCACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTCCTTTTCTCTGAGATCTCTTTTTACACATTGCGACAGAGGTGCTCTAGAGTCGAGTACCCTCCTACTACTCAGTCCAAGAAAAACGAGATAGTACTGATAGACAAGAGTTCTAGGCACTTTGACAGTTTGCCAAAGTTCACAGATTGTCCCTTCAAAGAAGAGTGGCGGGAGGTCTTCGAAGAGAAGCGCCCCCGGAGAAGATACGTTAAGAGATAGTGAGTGAGAATCAAAGAGGGCGGATATAGAAGACATAGAACGGATGAAAACACGTTCGGGTGCACACGGAAGAAGAAGAAGAAGAAGCTCCGGAGGGAAATAAAAAGAAAGAAGATCGATTGCGAGGGAGGAAATGGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>503 237 105 76 56 23</canonical_bands>
                <polymorphic_bands>526 237 105 76 56</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>503 237 105 76 56 23</canonical_bands>
                <polymorphic_bands>526 237 105 76 56</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTATTCTTCTCTTGCTCAACTG</pcr_primer_p1>
		<pcr_primer_p2>GAGCAACTCATATCTCTGTGTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTC</canonical_amplicon>
		<polymorphic_amplicon>CTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGMGCACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7196</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>239625</contig_pos>
        <strand>+</strand>
        <context>ATCTCTAAGT[G/T]MSCACRACGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGT</left_flank>
        <right_flank>AGCACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAGAAAAAAAACTCGGAAATAAATTTAGGTTACGGTAGTTGTCCTTTTGGGACTACGGCCACCGGCAATACTTTTCAGTTAAATACCTTTCCAACACCAAGATATTTGAAAATCCTAATTCTCATAGTATCTTGCCATATCCATCAAAATATATTGTAATATTTTTTTCTGAAAACATCGAACCAAATGTTTGATTTTTCAAAACTATTAGGAAACTGAGGAATTCCAGTATAATTCCAGTATGATTCCATTATAATTCCAGTAAAATTCTTGTATAAAATGTTTTCTGTACTTCAAAATATTGGAAGATTTGGGGATTCATCTCTTCCTCCCACACCCATAAGAATTTTGCAAATCTTTGTCAAAAAAGTATTTTCAATGACTTTTTCATCTTCTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTCCTTTTCTCTGAGATCTCTTTTTACACATTGCGACAGAGGTGCTCTAGAGTCGAGTACCCTCCTACTACTCAGTCCAAGAAAAACGAGATAGTACTGATAGACAAGAGTTCTAGGCACTTTGACAGTTTGCCAAAGTTCACAGATTGTCCCTTCAAAGAAGAGTGGCGGGAGGTCTTCGAAGAGAAGCGCCCCCGGAGAAGATACGTTAAGAGATAGTGAGTGAGAATCAAAGAGGGCGGATATAGAAGACATAGAACGGATGAAAACACGTTCGGGTGCACACGGAAGAAGAAGAAGAAGAAGCTCCGGAGGGAAATAAAAAGAAAGAAGATCGATTGCGAGGGAGGAAATGGGA</canonical>
            <polymorphic>TCGAGAAAAAAAACTCGGAAATAAATTTAGGTTACGGTAGTTGTCCTTTTGGGACTACGGCCACCGGCAATACTTTTCAGTTAAATACCTTTCCAACACCAAGATATTTGAAAATCCTAATTCTCATAGTATCTTGCCATATCCATCAAAATATATTGTAATATTTTTTTCTGAAAACATCGAACCAAATGTTTGATTTTTCAAAACTATTAGGAAACTGAGGAATTCCAGTATAATTCCAGTATGATTCCATTATAATTCCAGTAAAATTCTTGTATAAAATGTTTTCTGTACTTCAAAATATTGGAAGATTTGGGGATTCATCTCTTCCTCCCACACCCATAAGAATTTTGCAAATCTTTGTCAAAAAAGTATTTTCAATGACTTTTTCATCTTCTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTKAGCACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTCCTTTTCTCTGAGATCTCTTTTTACACATTGCGACAGAGGTGCTCTAGAGTCGAGTACCCTCCTACTACTCAGTCCAAGAAAAACGAGATAGTACTGATAGACAAGAGTTCTAGGCACTTTGACAGTTTGCCAAAGTTCACAGATTGTCCCTTCAAAGAAGAGTGGCGGGAGGTCTTCGAAGAGAAGCGCCCCCGGAGAAGATACGTTAAGAGATAGTGAGTGAGAATCAAAGAGGGCGGATATAGAAGACATAGAACGGATGAAAACACGTTCGGGTGCACACGGAAGAAGAAGAAGAAGAAGCTCCGGAGGGAAATAAAAAGAAAGAAGATCGATTGCGAGGGAGGAAATGGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>504 237 105 75 56 23</canonical_bands>
                <polymorphic_bands>527 237 105 75 56</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>504 237 105 75 56 23</canonical_bands>
                <polymorphic_bands>527 237 105 75 56</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>238 162 75 73 63 54 54 46 43 35 25 23 19 18 16 14 10 10 4 4 4 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>238 166 75 73 63 54 54 46 43 35 25 23 19 18 16 14 10 10 4 4 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTATTCTTCTCTTGCTCAACTG</pcr_primer_p1>
		<pcr_primer_p2>GAGCAACTCATATCTCTGTGTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTC</canonical_amplicon>
		<polymorphic_amplicon>CTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTKAGCACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7197</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>239446</contig_pos>
        <strand>+</strand>
        <context>ATTTGGGGAT[C/T]CATCTCTTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTGTATAAAATGTTTTCTGTACTTCAAAATATTGGAAGATTTGGGGAT</left_flank>
        <right_flank>CATCTCTTCCTCCCACACCCATAAGAATTTTGCAAATCTTTGTCAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGTGGCCGAAGGTCCCACAACGAGAACTACCGTAACCTAAAAATATTCTTACTTTCAGAATTTATTTTCTTGATGGTTACTGATTTTCGCCGATTTTTTTTTGTTATTTTTCCCCCATACAAGTGGGAAAATTAAAATTTCTGACAGTAAAAAAAAATTGACTGACAAAATACGGAAATCGAGAAAAAAAACTCGGAAATAAATTTAGGTTACGGTAGTTGTCCTTTTGGGACTACGGCCACCGGCAATACTTTTCAGTTAAATACCTTTCCAACACCAAGATATTTGAAAATCCTAATTCTCATAGTATCTTGCCATATCCATCAAAATATATTGTAATATTTTTTTCTGAAAACATCGAACCAAATGTTTGATTTTTCAAAACTATTAGGAAACTGAGGAATTCCAGTATAATTCCAGTATGATTCCATTATAATTCCAGTAAAATTCTTGTATAAAATGTTTTCTGTACTTCAAAATATTGGAAGATTTGGGGATTCATCTCTTCCTCCCACACCCATAAGAATTTTGCAAATCTTTGTCAAAAAAGTATTTTCAATGACTTTTTCATCTTCTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTCCTTTTCTCTGAGATCTCTTTTTACACATTGCGACAGAGGTGCTCTAGAGTCGAGTACCCTCCTACTACTCAGTCCAAGAAAAACGAGATAGTACTGATAGACAAGAGTTCTAGGCACTTTGACAGTTTGCCAAAGTTCACAGATTGTCCCTTCAAAGAAGAGTGGCGGGAGGTCTT</canonical>
            <polymorphic>CCGTGGCCGAAGGTCCCACAACGAGAACTACCGTAACCTAAAAATATTCTTACTTTCAGAATTTATTTTCTTGATGGTTACTGATTTTCGCCGATTTTTTTTTGTTATTTTTCCCCCATACAAGTGGGAAAATTAAAATTTCTGACAGTAAAAAAAAATTGACTGACAAAATACGGAAATCGAGAAAAAAAACTCGGAAATAAATTTAGGTTACGGTAGTTGTCCTTTTGGGACTACGGCCACCGGCAATACTTTTCAGTTAAATACCTTTCCAACACCAAGATATTTGAAAATCCTAATTCTCATAGTATCTTGCCATATCCATCAAAATATATTGTAATATTTTTTTCTGAAAACATCGAACCAAATGTTTGATTTTTCAAAACTATTAGGAAACTGAGGAATTCCAGTATAATTCCAGTATGATTCCATTATAATTCCAGTAAAATTCTTGTATAAAATGTTTTCTGTACTTCAAAATATTGGAAGATTTGGGGATYCATCTCTTCCTCCCACACCCATAAGAATTTTGCAAATCTTTGTCAAAAAAGTATTTTCAATGACTTTTTCATCTTCTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTCCTTTTCTCTGAGATCTCTTTTTACACATTGCGACAGAGGTGCTCTAGAGTCGAGTACCCTCCTACTACTCAGTCCAAGAAAAACGAGATAGTACTGATAGACAAGAGTTCTAGGCACTTTGACAGTTTGCCAAAGTTCACAGATTGTCCCTTCAAAGAAGAGTGGCGGGAGGTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>425 228 146 129 72</canonical_bands>
                <polymorphic_bands>425 228 218 129</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 425 72</canonical_bands>
                <polymorphic_bands>575 425</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATTCCATTATAATTCCAGTAAA</pcr_primer_p1>
		<pcr_primer_p2>AGAGATCAAGAAAGATCAAGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGATTCCATTATAATTCCAGTAAAATTCTTGTATAAAATGTTTTCTGTACTTCAAAATATTGGAAGATTTGGGGATTCATCTCTTCCTCCCACACCCATAAGAATTTTGCAAATCTTTGTCAAAAAAGTATTTTCAATGACTTTTTCATCTTCTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCT</canonical_amplicon>
		<polymorphic_amplicon>TGATTCCATTATAATTCCAGTAAAATTCTTGTATAAAATGTTTTCTGTACTTCAAAATATTGGAAGATTTGGGGATYCATCTCTTCCTCCCACACCCATAAGAATTTTGCAAATCTTTGTCAAAAAAGTATTTTCAATGACTTTTTCATCTTCTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7268</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>407815</contig_pos>
        <strand></strand>
        <context>TTTGTTTGAT[T/C]TAATTTAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GATGACCAAGAGCAAAGTTTGAGCTGTTCTAAAGTTTTTTTTTGTTTGAT</left_flank>
        <right_flank>TAATTTAAATGATTTTTTAATTGTTGTTGTTGTTGATATTGTTGTCTTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAGGTCTTGATTTATCCGATGTTGGGCTTGTGATTAATTACGACTTGCCAACTTCTATCATCAGTTACATTCACCGAGTTGGAAGAACTGGTCGAGCAGGAAAAACTGGACACGCTGTTACCTACTTCACCGATACTGACATGAAATATATCAAGTCCATCGCGACAGTAATTCGCCAATCTGGCTTTGACGTCCCTGAATACTTGATGGAGATGAAGAAAGTTTCAAGGTGAAAATTTCACTTTATATACTTATGTGCACACTTGTTGTTTTCAGAGACAGAAAAAAAGAAATGCTGAAGCGAGCTCCGAAACGCCAAAAGATTGCTACGGTTATAGAGCAAGTCCGGAAACAGAAAATGGCAAAGGCTGCATATGAGAAAAAAGAAAAACTCGAAGCAGGTAGCAGTTCTGTGAAAGTTTCAAAGTCAAAAAAGAAGATGAGAAAGATGACCAAGAGCAAAGTTTGAGCTGTTCTAAAGTTTTTTTTTGTTTGATTTAATTTAAATGATTTTTTAATTGTTGTTGTTGTTGATATTGTTGTCTTGAGAATAAAGTTTACAAAGCAAAGTTTCCTCCGATATATCACAGACATAAAAACACCAGAAAATCTCGGAAAAAGAAGGAAAGGTCTGATAAAAAAAATGAGAAATATGATTCATTTGAATACGCATTGTCGTAATTCGGAAAACTGTCACGCACAACACTTGGTGCTTATTTTCTTACATTTTTGAATCTAATGTATAACCTAATTATCATCGGCTAAGTCACTATCTCAGCACTTTCAATTTAGGAAACAGCGGCGAAGCGGTGGCGAAACTCTGGCGGAACTAAGTTGTCACACTGTTTCCTAAGTTTTGGAGATGCCCTCGAGCGCGCTTGCCCGCCCCTTTTCTTTGCATTTCGACTTTATTCCATTGAAAAAAAAACACAAAATCAAGTAGAATGACTAAAAAAAGATTTATTGAAATTTTAATGAAAGTTCAATTATTTAGCAGC</canonical>
            <polymorphic>CAGAGGTCTTGATTTATCCGATGTTGGGCTTGTGATTAATTACGACTTGCCAACTTCTATCATCAGTTACATTCACCGAGTTGGAAGAACTGGTCGAGCAGGAAAAACTGGACACGCTGTTACCTACTTCACCGATACTGACATGAAATATATCAAGTCCATCGCGACAGTAATTCGCCAATCTGGCTTTGACGTCCCTGAATACTTGATGGAGATGAAGAAAGTTTCAAGGTGAAAATTTCACTTTATATACTTATGTGCACACTTGTTGTTTTCAGAGACAGAAAAAAAGAAATGCTGAAGCGAGCTCCGAAACGCCAAAAGATTGCTACGGTTATAGAGCAAGTCCGGAAACAGAAAATGGCAAAGGCTGCATATGAGAAAAAAGAAAAACTCGAAGCAGGTAGCAGTTCTGTGAAAGTTTCAAAGTCAAAAAAGAAGATGAGAAAGATGACCAAGAGCAAAGTTTGAGCTGTTCTAAAGTTTTTTTTTGTTTGATYTAATTTAAATGATTTTTTAATTGTTGTTGTTGTTGATATTGTTGTCTTGAGAATAAAGTTTACAAAGCAAAGTTTCCTCCGATATATCACAGACATAAAAACACCAGAAAATCTCGGAAAAAGAAGGAAAGGTCTGATAAAAAAAATGAGAAATATGATTCATTTGAATACGCATTGTCGTAATTCGGAAAACTGTCACGCACAACACTTGGTGCTTATTTTCTTACATTTTTGAATCTAATGTATAACCTAATTATCATCGGCTAAGTCACTATCTCAGCACTTTCAATTTAGGAAACAGCGGCGAAGCGGTGGCGAAACTCTGGCGGAACTAAGTTGTCACACTGTTTCCTAAGTTTTGGAGATGCCCTCGAGCGCGCTTGCCCGCCCCTTTTCTTTGCATTTCGACTTTATTCCATTGAAAAAAAAACACAAAATCAAGTAGAATGACTAAAAAAAGATTTATTGAAATTTTAATGAAAGTTCAATTATTTAGCAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>464 457 36 26 12 5</canonical_bands>
                <polymorphic_bands>469 457 36 26 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGATTGCTACGGTTATAGAGC</pcr_primer_p1>
		<pcr_primer_p2>TTGCTTTGTAAACTTTATTCTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGATTGCTACGGTTATAGAGCAAGTCCGGAAACAGAAAATGGCAAAGGCTGCATATGAGAAAAAAGAAAAACTCGAAGCAGGTAGCAGTTCTGTGAAAGTTTCAAAGTCAAAAAAGAAGATGAGAAAGATGACCAAGAGCAAAGTTTGAGCTGTTCTAAAGTTTTTTTTTGTTTGATTTAATTTAAATGATTTTTTAATTGTTGTTGTTGTTGATATTGTTGTCTTGAGAATAAAGTTTACAAAGCAA</canonical_amplicon>
		<polymorphic_amplicon>AAAGATTGCTACGGTTATAGAGCAAGTCCGGAAACAGAAAATGGCAAAGGCTGCATATGAGAAAAAAGAAAAACTCGAAGCAGGTAGCAGTTCTGTGAAAGTTTCAAAGTCAAAAAAGAAGATGAGAAAGATGACCAAGAGCAAAGTTTGAGCTGTTCTAAAGTTTTTTTTTGTTTGATYTAATTTAAATGATTTTTTAATTGTTGTTGTTGTTGATATTGTTGTCTTGAGAATAAAGTTTACAAAGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7269</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>408011</contig_pos>
        <strand></strand>
        <context>CGGAAAACTG[T/C]CACGCACAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATGAGAAATATGATTCATTTGAATACGCATTGTCGTAATTCGGAAAACTG</left_flank>
        <right_flank>CACGCACAACACTTGGTGCTTATTTTCTTACATTTTTGAATCTAATGTAT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTGAATACTTGATGGAGATGAAGAAAGTTTCAAGGTGAAAATTTCACTTTATATACTTATGTGCACACTTGTTGTTTTCAGAGACAGAAAAAAAGAAATGCTGAAGCGAGCTCCGAAACGCCAAAAGATTGCTACGGTTATAGAGCAAGTCCGGAAACAGAAAATGGCAAAGGCTGCATATGAGAAAAAAGAAAAACTCGAAGCAGGTAGCAGTTCTGTGAAAGTTTCAAAGTCAAAAAAGAAGATGAGAAAGATGACCAAGAGCAAAGTTTGAGCTGTTCTAAAGTTTTTTTTTGTTTGATTTAATTTAAATGATTTTTTAATTGTTGTTGTTGTTGATATTGTTGTCTTGAGAATAAAGTTTACAAAGCAAAGTTTCCTCCGATATATCACAGACATAAAAACACCAGAAAATCTCGGAAAAAGAAGGAAAGGTCTGATAAAAAAAATGAGAAATATGATTCATTTGAATACGCATTGTCGTAATTCGGAAAACTGTCACGCACAACACTTGGTGCTTATTTTCTTACATTTTTGAATCTAATGTATAACCTAATTATCATCGGCTAAGTCACTATCTCAGCACTTTCAATTTAGGAAACAGCGGCGAAGCGGTGGCGAAACTCTGGCGGAACTAAGTTGTCACACTGTTTCCTAAGTTTTGGAGATGCCCTCGAGCGCGCTTGCCCGCCCCTTTTCTTTGCATTTCGACTTTATTCCATTGAAAAAAAAACACAAAATCAAGTAGAATGACTAAAAAAAGATTTATTGAAATTTTAATGAAAGTTCAATTATTTAGCAGCCTGTTGATCGGACTACAGCTCTTTGCGGCATAATTCTGTTCGAACTTTCCATCTCCCACAATCAATCATTTGTCTTCTTCCTCTGAAAAACATAAAATTAGCGTAAATAGGGTTAATATCACCTACATCTTCATTTGATGGGACGTTATCAAGCAATATATGCGCGCTTCGAAATCTTCAGACAAAGTATGGCATC</canonical>
            <polymorphic>CCTGAATACTTGATGGAGATGAAGAAAGTTTCAAGGTGAAAATTTCACTTTATATACTTATGTGCACACTTGTTGTTTTCAGAGACAGAAAAAAAGAAATGCTGAAGCGAGCTCCGAAACGCCAAAAGATTGCTACGGTTATAGAGCAAGTCCGGAAACAGAAAATGGCAAAGGCTGCATATGAGAAAAAAGAAAAACTCGAAGCAGGTAGCAGTTCTGTGAAAGTTTCAAAGTCAAAAAAGAAGATGAGAAAGATGACCAAGAGCAAAGTTTGAGCTGTTCTAAAGTTTTTTTTTGTTTGATTTAATTTAAATGATTTTTTAATTGTTGTTGTTGTTGATATTGTTGTCTTGAGAATAAAGTTTACAAAGCAAAGTTTCCTCCGATATATCACAGACATAAAAACACCAGAAAATCTCGGAAAAAGAAGGAAAGGTCTGATAAAAAAAATGAGAAATATGATTCATTTGAATACGCATTGTCGTAATTCGGAAAACTGYCACGCACAACACTTGGTGCTTATTTTCTTACATTTTTGAATCTAATGTATAACCTAATTATCATCGGCTAAGTCACTATCTCAGCACTTTCAATTTAGGAAACAGCGGCGAAGCGGTGGCGAAACTCTGGCGGAACTAAGTTGTCACACTGTTTCCTAAGTTTTGGAGATGCCCTCGAGCGCGCTTGCCCGCCCCTTTTCTTTGCATTTCGACTTTATTCCATTGAAAAAAAAACACAAAATCAAGTAGAATGACTAAAAAAAGATTTATTGAAATTTTAATGAAAGTTCAATTATTTAGCAGCCTGTTGATCGGACTACAGCTCTTTGCGGCATAATTCTGTTCGAACTTTCCATCTCCCACAATCAATCATTTGTCTTCTTCCTCTGAAAAACATAAAATTAGCGTAAATAGGGTTAATATCACCTACATCTTCATTTGATGGGACGTTATCAAGCAATATATGCGCGCTTCGAAATCTTCAGACAAAGTATGGCATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>361 350 152 137</canonical_bands>
                <polymorphic_bands>513 350 137</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>498 358 73 71</canonical_bands>
                <polymorphic_bands>571 358 71</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>498 358 73 71</canonical_bands>
                <polymorphic_bands>571 358 71</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTTGTTGTTGTTGATATTGTT</pcr_primer_p1>
		<pcr_primer_p2>ACTTAGCCGATGATAATTAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGTTGTTGTTGTTGATATTGTTGTCTTGAGAATAAAGTTTACAAAGCAAAGTTTCCTCCGATATATCACAGACATAAAAACACCAGAAAATCTCGGAAAAAGAAGGAAAGGTCTGATAAAAAAAATGAGAAATATGATTCATTTGAATACGCATTGTCGTAATTCGGAAAACTGTCACGCACAACACTTGGTGCTTATTTTCTTACATTTTTGAATCTAATGTATAACCTAATTATCATCGGCTAAGT</canonical_amplicon>
		<polymorphic_amplicon>TTGTTGTTGTTGTTGATATTGTTGTCTTGAGAATAAAGTTTACAAAGCAAAGTTTCCTCCGATATATCACAGACATAAAAACACCAGAAAATCTCGGAAAAAGAAGGAAAGGTCTGATAAAAAAAATGAGAAATATGATTCATTTGAATACGCATTGTCGTAATTCGGAAAACTGYCACGCACAACACTTGGTGCTTATTTTCTTACATTTTTGAATCTAATGTATAACCTAATTATCATCGGCTAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7270</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>420353</contig_pos>
        <strand>+</strand>
        <context>GCAGAGCACC[A/T]CATGCATAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCTTCCTCTACTACTCACATTCTACGAAGAACAGGAGGAAGCAGAGCACC</left_flank>
        <right_flank>CATGCATAAAACAACTCATGCTGCCTAGATTTCTTCTTACTGTCAGACAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATTCCGGTTAGTCGGATGAGAATGGCATTAGGTGTGCAATCGGTTTCTAGTCAAGATGAAGAAGAAGATGAAATATTGATTGGTACAGAACTCGATTTTTTTTCATTTCAACCGTTATTTTTCAGACATCGACGATAGAACAACACTCCTAAAAAATGATAAAGGTTCAAGAGATCCAAGTGTTGAAGACATTTTTCATAAAACCGATACAAACATTGGTACTTAGAAAACTTATTTTAAAATCAAAAAACCTTTTTATTCCAGCACAAGTACGAGAGGCACTTCCGGAGGATGGCCACGGAGCTAATGGCTTCCATTTTGTAACGGCTCGTGCTCCGACATCACCTACTGTTTCTGTTTGGATGATCATAATTGGTAAAGTCTCTTTTCTAGTTTTCGTTGTACATCTAATTCAATTTTCCAGGAGTTCTGTTGATTTTCTGTGTCCTTCCTCTACTACTCACATTCTACGAAGAACAGGAGGAAGCAGAGCACCACATGCATAAAACAACTCATGCTGCCTAGATTTCTTCTTACTGTCAGACATCCTTTTCTAGTTTTCTTTTGGGTTTTATTTATTTGGGAAATTTTAATGCCCATATTTCTAAGCTTACTTTCAAACACCTAGTGATAACTCGCCATTTTCATTTCATTCTACAAAAACAAGAACATTTCGCTTTTTGGGTAGCTACTCTGTTTAATGATTCCAAGTGAACTAAAATCAAATCACTTTTCATTTGACCACAATACTAAACTGCATAATCATAACCATTTATGGTAATAAAACTATGATAAAACGAAGAATATCTGGATGTTATCCTGATTTACAATTCGAATAATTATAACAATAAGATCAAGTATTAATTAAACATTTGTGCTCGGTGTACGATTTCGTATGGCATCCCCTTCATCACAGGCTAAGCGACAGAGTTCTTCCAAATGATCAGTGACTGGGATATTTATAGATGGATCAAGTCTGGAAATCTTTTTACGATTT</canonical>
            <polymorphic>AAAATTCCGGTTAGTCGGATGAGAATGGCATTAGGTGTGCAATCGGTTTCTAGTCAAGATGAAGAAGAAGATGAAATATTGATTGGTACAGAACTCGATTTTTTTTCATTTCAACCGTTATTTTTCAGACATCGACGATAGAACAACACTCCTAAAAAATGATAAAGGTTCAAGAGATCCAAGTGTTGAAGACATTTTTCATAAAACCGATACAAACATTGGTACTTAGAAAACTTATTTTAAAATCAAAAAACCTTTTTATTCCAGCACAAGTACGAGAGGCACTTCCGGAGGATGGCCACGGAGCTAATGGCTTCCATTTTGTAACGGCTCGTGCTCCGACATCACCTACTGTTTCTGTTTGGATGATCATAATTGGTAAAGTCTCTTTTCTAGTTTTCGTTGTACATCTAATTCAATTTTCCAGGAGTTCTGTTGATTTTCTGTGTCCTTCCTCTACTACTCACATTCTACGAAGAACAGGAGGAAGCAGAGCACCWCATGCATAAAACAACTCATGCTGCCTAGATTTCTTCTTACTGTCAGACATCCTTTTCTAGTTTTCTTTTGGGTTTTATTTATTTGGGAAATTTTAATGCCCATATTTCTAAGCTTACTTTCAAACACCTAGTGATAACTCGCCATTTTCATTTCATTCTACAAAAACAAGAACATTTCGCTTTTTGGGTAGCTACTCTGTTTAATGATTCCAAGTGAACTAAAATCAAATCACTTTTCATTTGACCACAATACTAAACTGCATAATCATAACCATTTATGGTAATAAAACTATGATAAAACGAAGAATATCTGGATGTTATCCTGATTTACAATTCGAATAATTATAACAATAAGATCAAGTATTAATTAAACATTTGTGCTCGGTGTACGATTTCGTATGGCATCCCCTTCATCACAGGCTAAGCGACAGAGTTCTTCCAAATGATCAGTGACTGGGATATTTATAGATGGATCAAGTCTGGAAATCTTTTTACGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>133 126 109 101 84 83 48 37 37 36 35 31 29 18 17 16 15 15 11 7 7 3 2</canonical_bands>
                <polymorphic_bands>133 129 109 101 84 83 48 37 37 36 35 31 29 18 17 16 15 15 11 7 7 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTTCTGTTGATTTTCTGTGTC</pcr_primer_p1>
		<pcr_primer_p2>TGTTCTTGTTTTTGTAGAATGAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAGTTCTGTTGATTTTCTGTGTCCTTCCTCTACTACTCACATTCTACGAAGAACAGGAGGAAGCAGAGCACCACATGCATAAAACAACTCATGCTGCCTAGATTTCTTCTTACTGTCAGACATCCTTTTCTAGTTTTCTTTTGGGTTTTATTTATTTGGGAAATTTTAATGCCCATATTTCTAAGCTTACTTTCAAACACCTAGTGATAACTCGCCATTTTCATTTCATTCTACAAAAACAAGAACA</canonical_amplicon>
		<polymorphic_amplicon>GAGTTCTGTTGATTTTCTGTGTCCTTCCTCTACTACTCACATTCTACGAAGAACAGGAGGAAGCAGAGCACCWCATGCATAAAACAACTCATGCTGCCTAGATTTCTTCTTACTGTCAGACATCCTTTTCTAGTTTTCTTTTGGGTTTTATTTATTTGGGAAATTTTAATGCCCATATTTCTAAGCTTACTTTCAAACACCTAGTGATAACTCGCCATTTTCATTTCATTCTACAAAAACAAGAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7271</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>420461</contig_pos>
        <strand>+</strand>
        <context>GCCCATATTT[C/T]TAAGCTTACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGTTTTCTTTTGGGTTTTATTTATTTGGGAAATTTTAATGCCCATATTT</left_flank>
        <right_flank>TAAGCTTACTTTCAAACACCTAGTGATAACTCGCCATTTTCATTTCATTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCAACCGTTATTTTTCAGACATCGACGATAGAACAACACTCCTAAAAAATGATAAAGGTTCAAGAGATCCAAGTGTTGAAGACATTTTTCATAAAACCGATACAAACATTGGTACTTAGAAAACTTATTTTAAAATCAAAAAACCTTTTTATTCCAGCACAAGTACGAGAGGCACTTCCGGAGGATGGCCACGGAGCTAATGGCTTCCATTTTGTAACGGCTCGTGCTCCGACATCACCTACTGTTTCTGTTTGGATGATCATAATTGGTAAAGTCTCTTTTCTAGTTTTCGTTGTACATCTAATTCAATTTTCCAGGAGTTCTGTTGATTTTCTGTGTCCTTCCTCTACTACTCACATTCTACGAAGAACAGGAGGAAGCAGAGCACCACATGCATAAAACAACTCATGCTGCCTAGATTTCTTCTTACTGTCAGACATCCTTTTCTAGTTTTCTTTTGGGTTTTATTTATTTGGGAAATTTTAATGCCCATATTTCTAAGCTTACTTTCAAACACCTAGTGATAACTCGCCATTTTCATTTCATTCTACAAAAACAAGAACATTTCGCTTTTTGGGTAGCTACTCTGTTTAATGATTCCAAGTGAACTAAAATCAAATCACTTTTCATTTGACCACAATACTAAACTGCATAATCATAACCATTTATGGTAATAAAACTATGATAAAACGAAGAATATCTGGATGTTATCCTGATTTACAATTCGAATAATTATAACAATAAGATCAAGTATTAATTAAACATTTGTGCTCGGTGTACGATTTCGTATGGCATCCCCTTCATCACAGGCTAAGCGACAGAGTTCTTCCAAATGATCAGTGACTGGGATATTTATAGATGGATCAAGTCTGGAAATCTTTTTACGATTTTTGATATTCGCTTTAGTTTTTTCAAACTCACCCGTATACAGGAGCCTTCTTGCGATAATAAATTGCCTTCGCAGTTTGGTGGCCTACATTTTTACACGATGAGTAGCA</canonical>
            <polymorphic>TTTCAACCGTTATTTTTCAGACATCGACGATAGAACAACACTCCTAAAAAATGATAAAGGTTCAAGAGATCCAAGTGTTGAAGACATTTTTCATAAAACCGATACAAACATTGGTACTTAGAAAACTTATTTTAAAATCAAAAAACCTTTTTATTCCAGCACAAGTACGAGAGGCACTTCCGGAGGATGGCCACGGAGCTAATGGCTTCCATTTTGTAACGGCTCGTGCTCCGACATCACCTACTGTTTCTGTTTGGATGATCATAATTGGTAAAGTCTCTTTTCTAGTTTTCGTTGTACATCTAATTCAATTTTCCAGGAGTTCTGTTGATTTTCTGTGTCCTTCCTCTACTACTCACATTCTACGAAGAACAGGAGGAAGCAGAGCACCACATGCATAAAACAACTCATGCTGCCTAGATTTCTTCTTACTGTCAGACATCCTTTTCTAGTTTTCTTTTGGGTTTTATTTATTTGGGAAATTTTAATGCCCATATTTYTAAGCTTACTTTCAAACACCTAGTGATAACTCGCCATTTTCATTTCATTCTACAAAAACAAGAACATTTCGCTTTTTGGGTAGCTACTCTGTTTAATGATTCCAAGTGAACTAAAATCAAATCACTTTTCATTTGACCACAATACTAAACTGCATAATCATAACCATTTATGGTAATAAAACTATGATAAAACGAAGAATATCTGGATGTTATCCTGATTTACAATTCGAATAATTATAACAATAAGATCAAGTATTAATTAAACATTTGTGCTCGGTGTACGATTTCGTATGGCATCCCCTTCATCACAGGCTAAGCGACAGAGTTCTTCCAAATGATCAGTGACTGGGATATTTATAGATGGATCAAGTCTGGAAATCTTTTTACGATTTTTGATATTCGCTTTAGTTTTTTCAAACTCACCCGTATACAGGAGCCTTCTTGCGATAATAAATTGCCTTCGCAGTTTGGTGGCCTACATTTTTACACGATGAGTAGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>383 313 187 117</canonical_bands>
                <polymorphic_bands>696 187 117</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTACTGTCAGACATCCTTTTC</pcr_primer_p1>
		<pcr_primer_p2>ACCATAAATGGTTATGATTATGC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTTACTGTCAGACATCCTTTTCTAGTTTTCTTTTGGGTTTTATTTATTTGGGAAATTTTAATGCCCATATTTCTAAGCTTACTTTCAAACACCTAGTGATAACTCGCCATTTTCATTTCATTCTACAAAAACAAGAACATTTCGCTTTTTGGGTAGCTACTCTGTTTAATGATTCCAAGTGAACTAAAATCAAATCACTTTTCATTTGACCACAATACTAAACTGCATAATCATAACCATTTATGGT</canonical_amplicon>
		<polymorphic_amplicon>TCTTACTGTCAGACATCCTTTTCTAGTTTTCTTTTGGGTTTTATTTATTTGGGAAATTTTAATGCCCATATTTYTAAGCTTACTTTCAAACACCTAGTGATAACTCGCCATTTTCATTTCATTCTACAAAAACAAGAACATTTCGCTTTTTGGGTAGCTACTCTGTTTAATGATTCCAAGTGAACTAAAATCAAATCACTTTTCATTTGACCACAATACTAAACTGCATAATCATAACCATTTATGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7272</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>421741</contig_pos>
        <strand>+</strand>
        <context>TTATGAATAC[G/T]TGTATTCAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCTCGGTTCGGACGAATGCAAAGGTTCGCTGAACAGATTTTTATGAATAC</left_flank>
        <right_flank>TGTATTCAAATGAAAACAAACTTTAGAAGCGCAACTGAATCTGTTTTTCT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAAGCGTTCGTTGATCTGAATTCAAAATTTCAAAATATCTGCTTATTTAGAATTGAAGACTCACAACTGCCATCATGATCTGAGATTGTTCTTTAGTAATTGGTTGTTGAGAGGAAGAAGAAAAACTTTGACGGTCAGAAGACATTGAAATGGTCCGTTTTGGAGCTGAAGTGTTATTTGATTTTTCAAAAGAAAAAAGGAAAAATTTACAAGGTGGGGCAACGTCGTCTTCATCTATTTCTCGGTCCCCTTCAGGATTTTCCGGAGAATCTGGGTCAACTTGTTTCCGTTTTTGGTTTTTGATTTCTCGTTCTTTCCTTATGTTTTTTTCAGCAGCCTCTGCAATTGTATTGATAGCTGATCCACGAACTTTTCCCTCCTGTTTCAAGTAATCACAAGCAGCAGCAAATGCTTTTTTGAATTCTTCATCTGCGTTTGGAGCTATTGGCTCGGTTCGGACGAATGCAAAGGTTCGCTGAACAGATTTTTATGAATACGTGTATTCAAATGAAAACAAACTTTAGAAGCGCAACTGAATCTGTTTTTCTTCATATCCTGCTCATTGGAAGGCAGCGGAAAGAAGCTGTATGAAACCTTTTTCTTATACACATTGTGCACCTGAAACGTTTCAGGTGTGATTTCTGACTATACAAAAGCGGAATTTTACCAATGCAGGCCACAACGGATCCTTTCGATACGGGACCCATATGACATCCCCTTTGAGTAACGTTTCTGTGACGGCTTCACTTTGATTAGGCATTCTAGACATCCTTCTGTAACTATCACATATGACAGTTAACACTTATTGTATTACAATTGATTAAAATATTGTTGGAGAAGATGGAACCAAAGATATAGGTGGAGAAATAGGCGCTACCTTGGTTGTGTGGTGCTACTCGATAATTTAAGATACGCCGGATGTCCCAGTTGGTAGAAATCATGAAAAACTAACTACGAAAATTTCAGAGAATTTTGGCACGTTTTCCACATTTTTTTTC</canonical>
            <polymorphic>TCCAAGCGTTCGTTGATCTGAATTCAAAATTTCAAAATATCTGCTTATTTAGAATTGAAGACTCACAACTGCCATCATGATCTGAGATTGTTCTTTAGTAATTGGTTGTTGAGAGGAAGAAGAAAAACTTTGACGGTCAGAAGACATTGAAATGGTCCGTTTTGGAGCTGAAGTGTTATTTGATTTTTCAAAAGAAAAAAGGAAAAATTTACAAGGTGGGGCAACGTCGTCTTCATCTATTTCTCGGTCCCCTTCAGGATTTTCCGGAGAATCTGGGTCAACTTGTTTCCGTTTTTGGTTTTTGATTTCTCGTTCTTTCCTTATGTTTTTTTCAGCAGCCTCTGCAATTGTATTGATAGCTGATCCACGAACTTTTCCCTCCTGTTTCAAGTAATCACAAGCAGCAGCAAATGCTTTTTTGAATTCTTCATCTGCGTTTGGAGCTATTGGCTCGGTTCGGACGAATGCAAAGGTTCGCTGAACAGATTTTTATGAATACKTGTATTCAAATGAAAACAAACTTTAGAAGCGCAACTGAATCTGTTTTTCTTCATATCCTGCTCATTGGAAGGCAGCGGAAAGAAGCTGTATGAAACCTTTTTCTTATACACATTGTGCACCTGAAACGTTTCAGGTGTGATTTCTGACTATACAAAAGCGGAATTTTACCAATGCAGGCCACAACGGATCCTTTCGATACGGGACCCATATGACATCCCCTTTGAGTAACGTTTCTGTGACGGCTTCACTTTGATTAGGCATTCTAGACATCCTTCTGTAACTATCACATATGACAGTTAACACTTATTGTATTACAATTGATTAAAATATTGTTGGAGAAGATGGAACCAAAGATATAGGTGGAGAAATAGGCGCTACCTTGGTTGTGTGGTGCTACTCGATAATTTAAGATACGCCGGATGTCCCAGTTGGTAGAAATCATGAAAAACTAACTACGAAAATTTCAGAGAATTTTGGCACGTTTTCCACATTTTTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>149 110 108 105 86 65 60 58 43 42 39 30 26 18 16 11 9 9 7 3 2 2 2</canonical_bands>
                <polymorphic_bands>213 149 110 86 65 60 58 43 42 39 30 26 18 16 11 9 9 7 3 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>274 251 224 128 103 20</canonical_bands>
                <polymorphic_bands>402 251 224 103 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCCTGTTTCAAGTAATCACAAG</pcr_primer_p1>
		<pcr_primer_p2>GTGCACAATGTGTATAAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CTCCTGTTTCAAGTAATCACAAGCAGCAGCAAATGCTTTTTTGAATTCTTCATCTGCGTTTGGAGCTATTGGCTCGGTTCGGACGAATGCAAAGGTTCGCTGAACAGATTTTTATGAATACGTGTATTCAAATGAAAACAAACTTTAGAAGCGCAACTGAATCTGTTTTTCTTCATATCCTGCTCATTGGAAGGCAGCGGAAAGAAGCTGTATGAAACCTTTTTCTTATACACATTGTGCAC</canonical_amplicon>
		<polymorphic_amplicon>CTCCTGTTTCAAGTAATCACAAGCAGCAGCAAATGCTTTTTTGAATTCTTCATCTGCGTTTGGAGCTATTGGCTCGGTTCGGACGAATGCAAAGGTTCGCTGAACAGATTTTTATGAATACKTGTATTCAAATGAAAACAAACTTTAGAAGCGCAACTGAATCTGTTTTTCTTCATATCCTGCTCATTGGAAGGCAGCGGAAAGAAGCTGTATGAAACCTTTTTCTTATACACATTGTGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7273</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>428544</contig_pos>
        <strand>+</strand>
        <context>AAAACTTTGA[A/C]TTTCAAAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCTACGGCGAGGGTGCTCTTCTACCATACATATAAAAAATAAAACTTTGA</left_flank>
        <right_flank>TTTCAAAACATAACTTTTAAAAAATTATTTCTTTACCACAAATGTCTTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCAATTCTCAGATTCCTGGAAAATACCGTAAAACCTATTTACAGCTGTGAGAGGTATTTAGTTAAAGCGAAACCTTTTGATATTTAACACAACCGAAATTTTTTAAATCGGAAAATTTCAAAATTTCTAGAATAATTTTTTTCTAATTGGATTTCTTGAGCAAAGTTTCAAATAAATGAACAGTGTGCTCCAAAATATACATGTTTCAAAAACCTACATACCGTAAACACTCTAATAGAGTGCCACCCAAACCTTCAAATTCCAGCACATGTATCTCAGTTCCAGTAAGAGATATCAAAAACTGGTCAACTGATAAAATGTTTATAGTAATGTCAAAAATATTTTGTTTAGTTGACCAATTTTTGTTATATTTTGCAGGGAATGAGATATATGGGTTCAAAGTTGACAGACACTCTACTAGAGTGTTTACGGTAACTTTGGTCTGAGCCTACGGCGAGGGTGCTCTTCTACCATACATATAAAAAATAAAACTTTGAATTTCAAAACATAACTTTTAAAAAATTATTTCTTTACCACAAATGTCTTCTTGGAACATCTTCTCGGCCACTCTTATGGACTGAAAACAGGTGTTTTCAATCTTACAAGCGAACCCATTAGACTATTATCATCAAGTGGTCATTGAGAACAAAACAATGACACGTGTCTGCTTCAACACTCGACCTGTTTTCTTCTTCAAAATGGATTGCTGAACAACAATATGTAATAGTGTTGCCTATCTTGTCATAATGGTTTTTGGAATCTGGGAACTGGTTGGAAAACACATAACGCCAACTTTGAGCTGATTTATCTCGGTCAATTTAAGAAATATCAAAAAGGTACCCACTGTTAAAAAAAACGGTTTAAACTACGATGTAGATTTTGCCAGTTAAGCATCATTCGATATATTTTCACATGTAGAGGGGGACTCCCGAACCTTAACAACCTATTTTTGAGGTGATCCGATGGGAGGAAAATTAACTTTTATCATCGTTGTAGTG</canonical>
            <polymorphic>TCTCAATTCTCAGATTCCTGGAAAATACCGTAAAACCTATTTACAGCTGTGAGAGGTATTTAGTTAAAGCGAAACCTTTTGATATTTAACACAACCGAAATTTTTTAAATCGGAAAATTTCAAAATTTCTAGAATAATTTTTTTCTAATTGGATTTCTTGAGCAAAGTTTCAAATAAATGAACAGTGTGCTCCAAAATATACATGTTTCAAAAACCTACATACCGTAAACACTCTAATAGAGTGCCACCCAAACCTTCAAATTCCAGCACATGTATCTCAGTTCCAGTAAGAGATATCAAAAACTGGTCAACTGATAAAATGTTTATAGTAATGTCAAAAATATTTTGTTTAGTTGACCAATTTTTGTTATATTTTGCAGGGAATGAGATATATGGGTTCAAAGTTGACAGACACTCTACTAGAGTGTTTACGGTAACTTTGGTCTGAGCCTACGGCGAGGGTGCTCTTCTACCATACATATAAAAAATAAAACTTTGAMTTTCAAAACATAACTTTTAAAAAATTATTTCTTTACCACAAATGTCTTCTTGGAACATCTTCTCGGCCACTCTTATGGACTGAAAACAGGTGTTTTCAATCTTACAAGCGAACCCATTAGACTATTATCATCAAGTGGTCATTGAGAACAAAACAATGACACGTGTCTGCTTCAACACTCGACCTGTTTTCTTCTTCAAAATGGATTGCTGAACAACAATATGTAATAGTGTTGCCTATCTTGTCATAATGGTTTTTGGAATCTGGGAACTGGTTGGAAAACACATAACGCCAACTTTGAGCTGATTTATCTCGGTCAATTTAAGAAATATCAAAAAGGTACCCACTGTTAAAAAAAACGGTTTAAACTACGATGTAGATTTTGCCAGTTAAGCATCATTCGATATATTTTCACATGTAGAGGGGGACTCCCGAACCTTAACAACCTATTTTTGAGGTGATCCGATGGGAGGAAAATTAACTTTTATCATCGTTGTAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>502 239 136 98 17 8</canonical_bands>
                <polymorphic_bands>741 136 98 17 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>295 157 139 113 100 94 26 24 17 12 11 8 4</canonical_bands>
                <polymorphic_bands>295 163 157 113 100 94 26 17 12 11 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATATACATGTTTCAAAAACCTAC</pcr_primer_p1>
		<pcr_primer_p2>CCAAGAAGACATTTGTGGTAA</pcr_primer_p2>
		<pcr_amplicon_size>360</pcr_amplicon_size>
		<canonical_amplicon>AAAATATACATGTTTCAAAAACCTACATACCGTAAACACTCTAATAGAGTGCCACCCAAACCTTCAAATTCCAGCACATGTATCTCAGTTCCAGTAAGAGATATCAAAAACTGGTCAACTGATAAAATGTTTATAGTAATGTCAAAAATATTTTGTTTAGTTGACCAATTTTTGTTATATTTTGCAGGGAATGAGATATATGGGTTCAAAGTTGACAGACACTCTACTAGAGTGTTTACGGTAACTTTGGTCTGAGCCTACGGCGAGGGTGCTCTTCTACCATACATATAAAAAATAAAACTTTGAATTTCAAAACATAACTTTTAAAAAATTATTTCTTTACCACAAATGTCTTCTTGG</canonical_amplicon>
		<polymorphic_amplicon>AAAATATACATGTTTCAAAAACCTACATACCGTAAACACTCTAATAGAGTGCCACCCAAACCTTCAAATTCCAGCACATGTATCTCAGTTCCAGTAAGAGATATCAAAAACTGGTCAACTGATAAAATGTTTATAGTAATGTCAAAAATATTTTGTTTAGTTGACCAATTTTTGTTATATTTTGCAGGGAATGAGATATATGGGTTCAAAGTTGACAGACACTCTACTAGAGTGTTTACGGTAACTTTGGTCTGAGCCTACGGCGAGGGTGCTCTTCTACCATACATATAAAAAATAAAACTTTGAMTTTCAAAACATAACTTTTAAAAAATTATTTCTTTACCACAAATGTCTTCTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7274</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>430253</contig_pos>
        <strand>+</strand>
        <context>TGGTAATTTG[G/T]AGTATACAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATTGAAAATGAAAAACAATTTTTTCGAAAAAAACTTGATGGTAATTTG</left_flank>
        <right_flank>AGTATACAATAACTACTTCTACAACTGAATTCGTTGTTCCTCTCAATGAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATTTAGTCAGATCGAATAGACAGCCGGCGTTAAAATTAGGTATGATGTAACAGGTCATGAACAGTGTCACCTGCTCCATCTGCTCTTCTGATTGAATAAGCTCAAAGGGGGAGTGAATGGAATACGGTATGAAAATGAAGCTGAGGATAGCAGAACTGTTGGTTCAAGCAAAAAAATTTTGGGATGTCGCTATTTTTCACTGGTTTGATTTTAGTTAATTGTTTTAGAATGCATTTTATGAAAATGTTACCTGAAAAATTTGAAAATCAGTTGCTATCAACTTTTTAAAAATGTAACCTAACTAGGGATGGTTGCAATCGGGAGGTGGAGCTTTTGTATAAGATCTATATTATTTGAAAGCTGAGAATGATACATTTTCAAATATTTATTTTGTTTTTTTTTGCTAAAGAACTACCCTTTTCGAGAAAATCAGGGTCGAAATCTGAGAAATTGAAAATGAAAAACAATTTTTTCGAAAAAAACTTGATGGTAATTTGGAGTATACAATAACTACTTCTACAACTGAATTCGTTGTTCCTCTCAATGAGAACTGGAAACCAGATGATATTTTTGAACGTCTTTTATCATTCCGTTTCAAATTTCAGTTTTTGCAAGTAAGGTAATTCCAGGTTCTGAACATGATTTCTGTTTTCGTTAGGGCCGATAGCAAAAGGGAACCTTTTTCGATATTGTATTATTCTTTAAAACTCCCCCATAAACCTTATTACCCTGAATATTTGCTGCCAGCCCCTCTATTGATGCCAGCCGGGTGGCAACACCCTCTGATGATCCACGCCCCTTTTCTGAGCTGAACCAATCGTAGCTGGCTTTGCCCCGCCCATGTTTTGAGCTTCAGCCAAGATGCTCAACAGTTTATTGTAGTTTACTTGACACCCATAATTGGGTTAAATCATATTATGATAACTTCAAATCTGAATCTTAATTCACGACCTACCACTTCCGGTGGGGACTATTCAAACTTCGGTAATCCCAATCTT</canonical>
            <polymorphic>CTATTTAGTCAGATCGAATAGACAGCCGGCGTTAAAATTAGGTATGATGTAACAGGTCATGAACAGTGTCACCTGCTCCATCTGCTCTTCTGATTGAATAAGCTCAAAGGGGGAGTGAATGGAATACGGTATGAAAATGAAGCTGAGGATAGCAGAACTGTTGGTTCAAGCAAAAAAATTTTGGGATGTCGCTATTTTTCACTGGTTTGATTTTAGTTAATTGTTTTAGAATGCATTTTATGAAAATGTTACCTGAAAAATTTGAAAATCAGTTGCTATCAACTTTTTAAAAATGTAACCTAACTAGGGATGGTTGCAATCGGGAGGTGGAGCTTTTGTATAAGATCTATATTATTTGAAAGCTGAGAATGATACATTTTCAAATATTTATTTTGTTTTTTTTTGCTAAAGAACTACCCTTTTCGAGAAAATCAGGGTCGAAATCTGAGAAATTGAAAATGAAAAACAATTTTTTCGAAAAAAACTTGATGGTAATTTGKAGTATACAATAACTACTTCTACAACTGAATTCGTTGTTCCTCTCAATGAGAACTGGAAACCAGATGATATTTTTGAACGTCTTTTATCATTCCGTTTCAAATTTCAGTTTTTGCAAGTAAGGTAATTCCAGGTTCTGAACATGATTTCTGTTTTCGTTAGGGCCGATAGCAAAAGGGAACCTTTTTCGATATTGTATTATTCTTTAAAACTCCCCCATAAACCTTATTACCCTGAATATTTGCTGCCAGCCCCTCTATTGATGCCAGCCGGGTGGCAACACCCTCTGATGATCCACGCCCCTTTTCTGAGCTGAACCAATCGTAGCTGGCTTTGCCCCGCCCATGTTTTGAGCTTCAGCCAAGATGCTCAACAGTTTATTGTAGTTTACTTGACACCCATAATTGGGTTAAATCATATTATGATAACTTCAAATCTGAATCTTAATTCACGACCTACCACTTCCGGTGGGGACTATTCAAACTTCGGTAATCCCAATCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAATTGAAAATGAAAAACAA</pcr_primer_p1>
		<pcr_primer_p2>AATACAATATCGAAAAAGGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GAGAAATTGAAAATGAAAAACAATTTTTTCGAAAAAAACTTGATGGTAATTTGGAGTATACAATAACTACTTCTACAACTGAATTCGTTGTTCCTCTCAATGAGAACTGGAAACCAGATGATATTTTTGAACGTCTTTTATCATTCCGTTTCAAATTTCAGTTTTTGCAAGTAAGGTAATTCCAGGTTCTGAACATGATTTCTGTTTTCGTTAGGGCCGATAGCAAAAGGGAACCTTTTTCGATATTGTATT</canonical_amplicon>
		<polymorphic_amplicon>GAGAAATTGAAAATGAAAAACAATTTTTTCGAAAAAAACTTGATGGTAATTTGKAGTATACAATAACTACTTCTACAACTGAATTCGTTGTTCCTCTCAATGAGAACTGGAAACCAGATGATATTTTTGAACGTCTTTTATCATTCCGTTTCAAATTTCAGTTTTTGCAAGTAAGGTAATTCCAGGTTCTGAACATGATTTCTGTTTTCGTTAGGGCCGATAGCAAAAGGGAACCTTTTTCGATATTGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7275</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>430095</contig_pos>
        <strand></strand>
        <context>gcttttgtat[A/G]agatctatat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGTAACCTAACTAGGGATGGTTGCAATCGGGAGGTGGAGCTTTTGTAT</left_flank>
        <right_flank>AGATCTATATTATTTGAAAGCTGAGAATGATACATTTTCAAATATTTATT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCCAGTTAGCAAATATGTGTTATAAGAAGTTCTTCATGTGTCTTTGGCTTCAATTAGAATTTCGCGTAGTTCATCCGCTTATCTCGAGATCCAAATGTTCAAATGTTCTCGAAAAGCCAAAACGGGTGGGCTCATATCCAAACAGAGACAAACCTACTATTTAGTCAGATCGAATAGACAGCCGGCGTTAAAATTAGGTATGATGTAACAGGTCATGAACAGTGTCACCTGCTCCATCTGCTCTTCTGATTGAATAAGCTCAAAGGGGGAGTGAATGGAATACGGTATGAAAATGAAGCTGAGGATAGCAGAACTGTTGGTTCAAGCAAAAAAATTTTGGGATGTCGCTATTTTTCACTGGTTTGATTTTAGTTAATTGTTTTAGAATGCATTTTATGAAAATGTTACCTGAAAAATTTGAAAATCAGTTGCTATCAACTTTTTAAAAATGTAACCTAACTAGGGATGGTTGCAATCGGGAGGTGGAGCTTTTGTATAAGATCTATATTATTTGAAAGCTGAGAATGATACATTTTCAAATATTTATTTTGTTTTTTTTTGCTAAAGAACTACCCTTTTCGAGAAAATCAGGGTCGAAATCTGAGAAATTGAAAATGAAAAACAATTTTTTCGAAAAAAACTTGATGGTAATTTGGAGTATACAATAACTACTTCTACAACTGAATTCGTTGTTCCTCTCAATGAGAACTGGAAACCAGATGATATTTTTGAACGTCTTTTATCATTCCGTTTCAAATTTCAGTTTTTGCAAGTAAGGTAATTCCAGGTTCTGAACATGATTTCTGTTTTCGTTAGGGCCGATAGCAAAAGGGAACCTTTTTCGATATTGTATTATTCTTTAAAACTCCCCCATAAACCTTATTACCCTGAATATTTGCTGCCAGCCCCTCTATTGATGCCAGCCGGGTGGCAACACCCTCTGATGATCCACGCCCCTTTTCTGAGCTGAACCAATCGTAGCTGGCTTTGCCCCGCCC</canonical>
            <polymorphic>CTTCCAGTTAGCAAATATGTGTTATAAGAAGTTCTTCATGTGTCTTTGGCTTCAATTAGAATTTCGCGTAGTTCATCCGCTTATCTCGAGATCCAAATGTTCAAATGTTCTCGAAAAGCCAAAACGGGTGGGCTCATATCCAAACAGAGACAAACCTACTATTTAGTCAGATCGAATAGACAGCCGGCGTTAAAATTAGGTATGATGTAACAGGTCATGAACAGTGTCACCTGCTCCATCTGCTCTTCTGATTGAATAAGCTCAAAGGGGGAGTGAATGGAATACGGTATGAAAATGAAGCTGAGGATAGCAGAACTGTTGGTTCAAGCAAAAAAATTTTGGGATGTCGCTATTTTTCACTGGTTTGATTTTAGTTAATTGTTTTAGAATGCATTTTATGAAAATGTTACCTGAAAAATTTGAAAATCAGTTGCTATCAACTTTTTAAAAATGTAACCTAACTAGGGATGGTTGCAATCGGGAGGTGGAGCTTTTGTATRAGATCTATATTATTTGAAAGCTGAGAATGATACATTTTCAAATATTTATTTTGTTTTTTTTTGCTAAAGAACTACCCTTTTCGAGAAAATCAGGGTCGAAATCTGAGAAATTGAAAATGAAAAACAATTTTTTCGAAAAAAACTTGATGGTAATTTGGAGTATACAATAACTACTTCTACAACTGAATTCGTTGTTCCTCTCAATGAGAACTGGAAACCAGATGATATTTTTGAACGTCTTTTATCATTCCGTTTCAAATTTCAGTTTTTGCAAGTAAGGTAATTCCAGGTTCTGAACATGATTTCTGTTTTCGTTAGGGCCGATAGCAAAAGGGAACCTTTTTCGATATTGTATTATTCTTTAAAACTCCCCCATAAACCTTATTACCCTGAATATTTGCTGCCAGCCCCTCTATTGATGCCAGCCGGGTGGCAACACCCTCTGATGATCCACGCCCCTTTTCTGAGCTGAACCAATCGTAGCTGGCTTTGCCCCGCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTTTGATTTTAGTTAATTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCATTTTCAATTTCTCAGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>TGGTTTGATTTTAGTTAATTGTTTTAGAATGCATTTTATGAAAATGTTACCTGAAAAATTTGAAAATCAGTTGCTATCAACTTTTTAAAAATGTAACCTAACTAGGGATGGTTGCAATCGGGAGGTGGAGCTTTTGTATAAGATCTATATTATTTGAAAGCTGAGAATGATACATTTTCAAATATTTATTTTGTTTTTTTTTGCTAAAGAACTACCCTTTTCGAGAAAATCAGGGTCGAAATCTGAGAAATTGAAAATGA</canonical_amplicon>
		<polymorphic_amplicon>TGGTTTGATTTTAGTTAATTGTTTTAGAATGCATTTTATGAAAATGTTACCTGAAAAATTTGAAAATCAGTTGCTATCAACTTTTTAAAAATGTAACCTAACTAGGGATGGTTGCAATCGGGAGGTGGAGCTTTTGTATRAGATCTATATTATTTGAAAGCTGAGAATGATACATTTTCAAATATTTATTTTGTTTTTTTTTGCTAAAGAACTACCCTTTTCGAGAAAATCAGGGTCGAAATCTGAGAAATTGAAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7276</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>430011</contig_pos>
        <strand>+</strand>
        <context>GTTACCTGAA[A/C]AATTTGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGATTTTAGTTAATTGTTTTAGAATGCATTTTATGAAAATGTTACCTGAA</left_flank>
        <right_flank>AATTTGAAAATCAGTTGCTATCAACTTTTTAAAAATGTAACCTAACTAGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATCTGGTTACCTGAACTTTTAGGTTACCTTCAGGAATTTCATAAATTCTTCATACTGATTCTGTATTTTAAGTTTTGGTTCTTCCAGTTAGCAAATATGTGTTATAAGAAGTTCTTCATGTGTCTTTGGCTTCAATTAGAATTTCGCGTAGTTCATCCGCTTATCTCGAGATCCAAATGTTCAAATGTTCTCGAAAAGCCAAAACGGGTGGGCTCATATCCAAACAGAGACAAACCTACTATTTAGTCAGATCGAATAGACAGCCGGCGTTAAAATTAGGTATGATGTAACAGGTCATGAACAGTGTCACCTGCTCCATCTGCTCTTCTGATTGAATAAGCTCAAAGGGGGAGTGAATGGAATACGGTATGAAAATGAAGCTGAGGATAGCAGAACTGTTGGTTCAAGCAAAAAAATTTTGGGATGTCGCTATTTTTCACTGGTTTGATTTTAGTTAATTGTTTTAGAATGCATTTTATGAAAATGTTACCTGAAAAATTTGAAAATCAGTTGCTATCAACTTTTTAAAAATGTAACCTAACTAGGGATGGTTGCAATCGGGAGGTGGAGCTTTTGTATAAGATCTATATTATTTGAAAGCTGAGAATGATACATTTTCAAATATTTATTTTGTTTTTTTTTGCTAAAGAACTACCCTTTTCGAGAAAATCAGGGTCGAAATCTGAGAAATTGAAAATGAAAAACAATTTTTTCGAAAAAAACTTGATGGTAATTTGGAGTATACAATAACTACTTCTACAACTGAATTCGTTGTTCCTCTCAATGAGAACTGGAAACCAGATGATATTTTTGAACGTCTTTTATCATTCCGTTTCAAATTTCAGTTTTTGCAAGTAAGGTAATTCCAGGTTCTGAACATGATTTCTGTTTTCGTTAGGGCCGATAGCAAAAGGGAACCTTTTTCGATATTGTATTATTCTTTAAAACTCCCCCATAAACCTTATTACCCTGAATATTTGCTGCCAGCCCCTCTAT</canonical>
            <polymorphic>AAAAATCTGGTTACCTGAACTTTTAGGTTACCTTCAGGAATTTCATAAATTCTTCATACTGATTCTGTATTTTAAGTTTTGGTTCTTCCAGTTAGCAAATATGTGTTATAAGAAGTTCTTCATGTGTCTTTGGCTTCAATTAGAATTTCGCGTAGTTCATCCGCTTATCTCGAGATCCAAATGTTCAAATGTTCTCGAAAAGCCAAAACGGGTGGGCTCATATCCAAACAGAGACAAACCTACTATTTAGTCAGATCGAATAGACAGCCGGCGTTAAAATTAGGTATGATGTAACAGGTCATGAACAGTGTCACCTGCTCCATCTGCTCTTCTGATTGAATAAGCTCAAAGGGGGAGTGAATGGAATACGGTATGAAAATGAAGCTGAGGATAGCAGAACTGTTGGTTCAAGCAAAAAAATTTTGGGATGTCGCTATTTTTCACTGGTTTGATTTTAGTTAATTGTTTTAGAATGCATTTTATGAAAATGTTACCTGAAMAATTTGAAAATCAGTTGCTATCAACTTTTTAAAAATGTAACCTAACTAGGGATGGTTGCAATCGGGAGGTGGAGCTTTTGTATAAGATCTATATTATTTGAAAGCTGAGAATGATACATTTTCAAATATTTATTTTGTTTTTTTTTGCTAAAGAACTACCCTTTTCGAGAAAATCAGGGTCGAAATCTGAGAAATTGAAAATGAAAAACAATTTTTTCGAAAAAAACTTGATGGTAATTTGGAGTATACAATAACTACTTCTACAACTGAATTCGTTGTTCCTCTCAATGAGAACTGGAAACCAGATGATATTTTTGAACGTCTTTTATCATTCCGTTTCAAATTTCAGTTTTTGCAAGTAAGGTAATTCCAGGTTCTGAACATGATTTCTGTTTTCGTTAGGGCCGATAGCAAAAGGGAACCTTTTTCGATATTGTATTATTCTTTAAAACTCCCCCATAAACCTTATTACCCTGAATATTTGCTGCCAGCCCCTCTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>275 269 159 96 82 72 38 9</canonical_bands>
                <polymorphic_bands>351 275 159 96 72 38 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGTTTGATTTTAGTTAATTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCATTTTCAATTTCTCAGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>TGGTTTGATTTTAGTTAATTGTTTTAGAATGCATTTTATGAAAATGTTACCTGAAAAATTTGAAAATCAGTTGCTATCAACTTTTTAAAAATGTAACCTAACTAGGGATGGTTGCAATCGGGAGGTGGAGCTTTTGTATAAGATCTATATTATTTGAAAGCTGAGAATGATACATTTTCAAATATTTATTTTGTTTTTTTTTGCTAAAGAACTACCCTTTTCGAGAAAATCAGGGTCGAAATCTGAGAAATTGAAAATGA</canonical_amplicon>
		<polymorphic_amplicon>TGGTTTGATTTTAGTTAATTGTTTTAGAATGCATTTTATGAAAATGTTACCTGAAMAATTTGAAAATCAGTTGCTATCAACTTTTTAAAAATGTAACCTAACTAGGGATGGTTGCAATCGGGAGGTGGAGCTTTTGTATAAGATCTATATTATTTGAAAGCTGAGAATGATACATTTTCAAATATTTATTTTGTTTTTTTTTGCTAAAGAACTACCCTTTTCGAGAAAATCAGGGTCGAAATCTGAGAAATTGAAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7277</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>441272</contig_pos>
        <strand>+</strand>
        <context>GTAAAAATCG[A/G]AGACATTCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATTAAATAATTTTAGGCCCAAAAAATACCGGAGGTGTTGTAAAAATCG</left_flank>
        <right_flank>AGACATTCTTGCTAAGCTAAAGCTGCGAATTCAAGAACGAGACGAAGCAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACGACGACTCTGATGAAGAATGCGCTAACAATTTTTATTCGGCTCGAGAGTTACTCCGTTCAGAGGAAGATAGAAGAAGAGAAGAACAGGAACGATTTCTAGAAAGAGAGCATGGAGATGTAGACGAATCAGATCGGAAGAAGGATGAAGATAGTGAGAATGAAGAATGGGAAAGACAACAAATAAGGAAAGCTGTGAGCAAGAGAGAGGTTAGAACTTTTCATGATTCGGTTGTTTCTGACCATGTGCATTTTCAGATTGTACAACTCCGAACAGAGAAACGGAACACTTCTCAACTTTTTGGTCATGTTGCTCCGATAGAAGATGATACCGCAATGGATATGGATATTGATCTGGAAATGGATGTACAAGTGATCGGAAAACCTGATTTTTCAGGTATTTGTATTCTATAACTTTATTCAGAAAATCTTGTTTTTTCGTCATTTATTCATTAAATAATTTTAGGCCCAAAAAATACCGGAGGTGTTGTAAAAATCGGAGACATTCTTGCTAAGCTAAAGCTGCGAATTCAAGAACGAGACGAAGCACTCAATTTCCGGAAGGAAGAGAAAAGAAAGTTGCATCAGAATATCGAAGAGAATAAAGCTTTGATTGCAAAGGTATAGTCGACATCTTTGATATGTCTGTATTCATGTCTTTATTTTCAGCTGGAATCCGAACTTCCCACCCAAAGCACAAAATACACAATGTACCAGGAGTTGCGAGTTTATTCGCGACGTCTTTTGGAATGTTTAAACGAAAAAGTGGCTGAAATCAATGGAATAGTTGATAAAAGAAGAGATTGTGGTAGAGCTAAAACAATGAGAATCATGTCGAGACGACGGCAAGACACGAGGGATCAACACGCGGAGTGTATGCAAGGAAAATCGGCTAAAATGGGAGAAGCAGCGACGAGATCAGCAGAACGAGAAGCGCGAAGGTAAGTTCTAGCTAAAAAGAGGAACTTTTGTTCAATTTTTTCATTTCTTCGCTATCCTT</canonical>
            <polymorphic>AACGACGACTCTGATGAAGAATGCGCTAACAATTTTTATTCGGCTCGAGAGTTACTCCGTTCAGAGGAAGATAGAAGAAGAGAAGAACAGGAACGATTTCTAGAAAGAGAGCATGGAGATGTAGACGAATCAGATCGGAAGAAGGATGAAGATAGTGAGAATGAAGAATGGGAAAGACAACAAATAAGGAAAGCTGTGAGCAAGAGAGAGGTTAGAACTTTTCATGATTCGGTTGTTTCTGACCATGTGCATTTTCAGATTGTACAACTCCGAACAGAGAAACGGAACACTTCTCAACTTTTTGGTCATGTTGCTCCGATAGAAGATGATACCGCAATGGATATGGATATTGATCTGGAAATGGATGTACAAGTGATCGGAAAACCTGATTTTTCAGGTATTTGTATTCTATAACTTTATTCAGAAAATCTTGTTTTTTCGTCATTTATTCATTAAATAATTTTAGGCCCAAAAAATACCGGAGGTGTTGTAAAAATCGRAGACATTCTTGCTAAGCTAAAGCTGCGAATTCAAGAACGAGACGAAGCACTCAATTTCCGGAAGGAAGAGAAAAGAAAGTTGCATCAGAATATCGAAGAGAATAAAGCTTTGATTGCAAAGGTATAGTCGACATCTTTGATATGTCTGTATTCATGTCTTTATTTTCAGCTGGAATCCGAACTTCCCACCCAAAGCACAAAATACACAATGTACCAGGAGTTGCGAGTTTATTCGCGACGTCTTTTGGAATGTTTAAACGAAAAAGTGGCTGAAATCAATGGAATAGTTGATAAAAGAAGAGATTGTGGTAGAGCTAAAACAATGAGAATCATGTCGAGACGACGGCAAGACACGAGGGATCAACACGCGGAGTGTATGCAAGGAAAATCGGCTAAAATGGGAGAAGCAGCGACGAGATCAGCAGAACGAGAAGCGCGAAGGTAAGTTCTAGCTAAAAAGAGGAACTTTTGTTCAATTTTTTCATTTCTTCGCTATCCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>322 103 91 88 76 69 62 51 46 44 17 14 12 5</canonical_bands>
                <polymorphic_bands>322 164 103 91 69 62 51 46 44 17 14 12 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATTGATCTGGAAATGGATGTA</pcr_primer_p1>
		<pcr_primer_p2>GATATTCTGATGCAACTTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATATTGATCTGGAAATGGATGTACAAGTGATCGGAAAACCTGATTTTTCAGGTATTTGTATTCTATAACTTTATTCAGAAAATCTTGTTTTTTCGTCATTTATTCATTAAATAATTTTAGGCCCAAAAAATACCGGAGGTGTTGTAAAAATCGGAGACATTCTTGCTAAGCTAAAGCTGCGAATTCAAGAACGAGACGAAGCACTCAATTTCCGGAAGGAAGAGAAAAGAAAGTTGCATCAGAATATC</canonical_amplicon>
		<polymorphic_amplicon>ATATTGATCTGGAAATGGATGTACAAGTGATCGGAAAACCTGATTTTTCAGGTATTTGTATTCTATAACTTTATTCAGAAAATCTTGTTTTTTCGTCATTTATTCATTAAATAATTTTAGGCCCAAAAAATACCGGAGGTGTTGTAAAAATCGRAGACATTCTTGCTAAGCTAAAGCTGCGAATTCAAGAACGAGACGAAGCACTCAATTTCCGGAAGGAAGAGAAAAGAAAGTTGCATCAGAATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7278</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>521707</contig_pos>
        <strand></strand>
        <context>ACATTTTTAa[T/C]cagtcggttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTATTTAGGTTTTTCAAAAATTATAAATGAAATCTTTCGACATTTTTAA</left_flank>
        <right_flank>CAGTCGGTTTACGCCATCTGTCGGAGTCTCGACCTTCGAATCTGCATTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGATAAATCTGCTCAAAGTTAAAAGTTCCGGGAACATTCTATTACAGGTTGGACGGTAGTAGAATTGGAATTTAAAAAAACCGTTCAATATCTTCAGGTGCTCCCTGCACAACCTCCAAACGGAATGAGGAGGACATTTGAAAATTCGGGTATAACCTTCGGTTCATATACAGCAAAAACTGTTACTGTCTACAAAGAGGGTGACCTACATTTTGCGGTTCGTTTTTTATAATTTTAAACTTCCTTGACACCATCGAGCATATTAAGAACTCAAAAAAATTTACAATCTTATATCTTAAGGGTGTCCGTGTTCCTGTATCCAAACAACGTTACACAACCATAGCTAATTTGATGGATGATCTCAATCGGATAATATATTTGCCGTATGGGGTATGTTTCGATTTTATGCTTTTCAAGTTTTGGTTTCTTTTCTTTTCTTCCCTTCCCTTTTATTTAGGTTTTTCAAAAATTATAAATGAAATCTTTCGACATTTTTAATCAGTCGGTTTACGCCATCTGTCGGAGTCTCGACCTTCGAATCTGCATTTGAATTTCTAACTTCAGCATTTCCCACTTTCCGAGTCCCCAGAATTTCTGAATGTATGAATTTCCAAATATTCGAATTTCCCATTAAATTTTGATCCCTGGATTACTGAACTTTTGAAATTCTGTTATCCGGAATAGTTGAATTCCCGAAATTCTGAAGTTCCATATTTTCGAATGACCGAATATCAGAATTACTGAATTTTTTAAATCCCTGGTTCACCAAATCCCAATTGAACTTTTACTTATGTTCTGGTTTTCTTTGTTTTCCTTTAAAAAATGTTCCAAATCACTGATGTTGATCTATTTTTAAGCCAGAAAAGGCATCCTCAAATTACGTCAAAAGTCAGCAGAAAAAAAATAATTTCCGGTACTTTGAAAACTTTCTGATCATTCGATTCTTTTTTCGCTTGCTTTAGCCATTATAAATCAGCCAATCTAGGTATCCATGAGAAC</canonical>
            <polymorphic>GAGATAAATCTGCTCAAAGTTAAAAGTTCCGGGAACATTCTATTACAGGTTGGACGGTAGTAGAATTGGAATTTAAAAAAACCGTTCAATATCTTCAGGTGCTCCCTGCACAACCTCCAAACGGAATGAGGAGGACATTTGAAAATTCGGGTATAACCTTCGGTTCATATACAGCAAAAACTGTTACTGTCTACAAAGAGGGTGACCTACATTTTGCGGTTCGTTTTTTATAATTTTAAACTTCCTTGACACCATCGAGCATATTAAGAACTCAAAAAAATTTACAATCTTATATCTTAAGGGTGTCCGTGTTCCTGTATCCAAACAACGTTACACAACCATAGCTAATTTGATGGATGATCTCAATCGGATAATATATTTGCCGTATGGGGTATGTTTCGATTTTATGCTTTTCAAGTTTTGGTTTCTTTTCTTTTCTTCCCTTCCCTTTTATTTAGGTTTTTCAAAAATTATAAATGAAATCTTTCGACATTTTTAAYCAGTCGGTTTACGCCATCTGTCGGAGTCTCGACCTTCGAATCTGCATTTGAATTTCTAACTTCAGCATTTCCCACTTTCCGAGTCCCCAGAATTTCTGAATGTATGAATTTCCAAATATTCGAATTTCCCATTAAATTTTGATCCCTGGATTACTGAACTTTTGAAATTCTGTTATCCGGAATAGTTGAATTCCCGAAATTCTGAAGTTCCATATTTTCGAATGACCGAATATCAGAATTACTGAATTTTTTAAATCCCTGGTTCACCAAATCCCAATTGAACTTTTACTTATGTTCTGGTTTTCTTTGTTTTCCTTTAAAAAATGTTCCAAATCACTGATGTTGATCTATTTTTAAGCCAGAAAAGGCATCCTCAAATTACGTCAAAAGTCAGCAGAAAAAAAATAATTTCCGGTACTTTGAAAACTTTCTGATCATTCGATTCTTTTTTCGCTTGCTTTAGCCATTATAAATCAGCCAATCTAGGTATCCATGAGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATATTTGCCGTATGGGGTAT</pcr_primer_p1>
		<pcr_primer_p2>ATTCGAATATTTGGAAATTCATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATATTTGCCGTATGGGGTATGTTTCGATTTTATGCTTTTCAAGTTTTGGTTTCTTTTCTTTTCTTCCCTTCCCTTTTATTTAGGTTTTTCAAAAATTATAAATGAAATCTTTCGACATTTTTAATCAGTCGGTTTACGCCATCTGTCGGAGTCTCGACCTTCGAATCTGCATTTGAATTTCTAACTTCAGCATTTCCCACTTTCCGAGTCCCCAGAATTTCTGAATGTATGAATTTCCAAATATTCGAAT</canonical_amplicon>
		<polymorphic_amplicon>TATATTTGCCGTATGGGGTATGTTTCGATTTTATGCTTTTCAAGTTTTGGTTTCTTTTCTTTTCTTCCCTTCCCTTTTATTTAGGTTTTTCAAAAATTATAAATGAAATCTTTCGACATTTTTAAYCAGTCGGTTTACGCCATCTGTCGGAGTCTCGACCTTCGAATCTGCATTTGAATTTCTAACTTCAGCATTTCCCACTTTCCGAGTCCCCAGAATTTCTGAATGTATGAATTTCCAAATATTCGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7279</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>559025</contig_pos>
        <strand>+</strand>
        <context>CGTTTTCTAT[G/T]CAGTATTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTCCACTGACACTGATTAATGAAATCTCTTTGGTATTTTACGTTTTCTAT</left_flank>
        <right_flank>CAGTATTTTCCCGATCAATGAAATACAGAATGGAGGCTTAAATCGGATCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAACACCTCATTTCTTTTTTATTTTTCTCCTCTAATTTATATCTAATTTCCCACAAAACAAATCCATTATGTATTCTATAAGCTTCTCCTCTCGTGCCTCATGTTCCACCCAATATGTAATCTTTCCCCAAATAATTTATAATTGTAGAAAATTTTCAAACTTATAATTGTCTTCTTCTCATCTTACTCTTAAATCGTATTTTTGCTGGTTTCTTTTGTTTTTTTCCTTTTTTACTGCTCTCCTCCTCGCTTTACTGCTTTATTCTTTTCACTCCGTTTTTATCATTGATTTACAGTAACCCGCCAAAAAATTCCAGAGGGAAAAATCCTCCCCGCATGCATTCCTTCTAAACCTGTTTTCTCAACTCTAGATGTTCTAATCTGAAAGCGTTCGCTTCTTTCTCTCTTTCCCGTATTTTTGCCTTCTGATCCCGATTTCCATGTTTTGGTCCACTGACACTGATTAATGAAATCTCTTTGGTATTTTACGTTTTCTATGCAGTATTTTCCCGATCAATGAAATACAGAATGGAGGCTTAAATCGGATCATTCTTAATGAATTTGAGAATTCGATAGAGCTCAATACATGCACTGAAAAAATAATTGCTGAGGCTGGGCGATAAAAATTTATTAGGTTCCATCTTCTGTATCCCAGGCAACCCATTTTCGTTATGATGGGGAAGGGATGGAAATTTGGGGTTTCATTCTCCAACCTTCTTTTTGAATCCCCTTCGTTTTTTCGAATTTTGTTGGAAGTATCAGTATATCGGTTTCTGTGAGGGAATTCAGAAAATTGTTGGAAGAAAAATAGTTCAAGATATTATTAGGGTACAAAAAAAAATAGGAGCTGTGGAAGAGAACCTGTGACCGTAGTCGAAGGTCCCACAACGAAAACTACAGTAATCTAAAAAATTTCGGAATATATTTTCTCGATGTTTTGTTATTTTTCCCTTGAAAAGTCGATAAATTAACTTAATGAATTCTTAATGAAATAAATTC</canonical>
            <polymorphic>ACAACACCTCATTTCTTTTTTATTTTTCTCCTCTAATTTATATCTAATTTCCCACAAAACAAATCCATTATGTATTCTATAAGCTTCTCCTCTCGTGCCTCATGTTCCACCCAATATGTAATCTTTCCCCAAATAATTTATAATTGTAGAAAATTTTCAAACTTATAATTGTCTTCTTCTCATCTTACTCTTAAATCGTATTTTTGCTGGTTTCTTTTGTTTTTTTCCTTTTTTACTGCTCTCCTCCTCGCTTTACTGCTTTATTCTTTTCACTCCGTTTTTATCATTGATTTACAGTAACCCGCCAAAAAATTCCAGAGGGAAAAATCCTCCCCGCATGCATTCCTTCTAAACCTGTTTTCTCAACTCTAGATGTTCTAATCTGAAAGCGTTCGCTTCTTTCTCTCTTTCCCGTATTTTTGCCTTCTGATCCCGATTTCCATGTTTTGGTCCACTGACACTGATTAATGAAATCTCTTTGGTATTTTACGTTTTCTATKCAGTATTTTCCCGATCAATGAAATACAGAATGGAGGCTTAAATCGGATCATTCTTAATGAATTTGAGAATTCGATAGAGCTCAATACATGCACTGAAAAAATAATTGCTGAGGCTGGGCGATAAAAATTTATTAGGTTCCATCTTCTGTATCCCAGGCAACCCATTTTCGTTATGATGGGGAAGGGATGGAAATTTGGGGTTTCATTCTCCAACCTTCTTTTTGAATCCCCTTCGTTTTTTCGAATTTTGTTGGAAGTATCAGTATATCGGTTTCTGTGAGGGAATTCAGAAAATTGTTGGAAGAAAAATAGTTCAAGATATTATTAGGGTACAAAAAAAAATAGGAGCTGTGGAAGAGAACCTGTGACCGTAGTCGAAGGTCCCACAACGAAAACTACAGTAATCTAAAAAATTTCGGAATATATTTTCTCGATGTTTTGTTATTTTTCCCTTGAAAAGTCGATAAATTAACTTAATGAATTCTTAATGAAATAAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>410 340 160 90</canonical_bands>
                <polymorphic_bands>410 340 250</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCCTTCTAAACCTGTTTTCTC</pcr_primer_p1>
		<pcr_primer_p2>TATTGAGCTCTATCGAATTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATTCCTTCTAAACCTGTTTTCTCAACTCTAGATGTTCTAATCTGAAAGCGTTCGCTTCTTTCTCTCTTTCCCGTATTTTTGCCTTCTGATCCCGATTTCCATGTTTTGGTCCACTGACACTGATTAATGAAATCTCTTTGGTATTTTACGTTTTCTATGCAGTATTTTCCCGATCAATGAAATACAGAATGGAGGCTTAAATCGGATCATTCTTAATGAATTTGAGAATTCGATAGAGCTCAATA</canonical_amplicon>
		<polymorphic_amplicon>ATTCCTTCTAAACCTGTTTTCTCAACTCTAGATGTTCTAATCTGAAAGCGTTCGCTTCTTTCTCTCTTTCCCGTATTTTTGCCTTCTGATCCCGATTTCCATGTTTTGGTCCACTGACACTGATTAATGAAATCTCTTTGGTATTTTACGTTTTCTATKCAGTATTTTCCCGATCAATGAAATACAGAATGGAGGCTTAAATCGGATCATTCTTAATGAATTTGAGAATTCGATAGAGCTCAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7280</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>559042</contig_pos>
        <strand>+</strand>
        <context>TTTCCCGATC[A/T]ATGAAATACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATGAAATCTCTTTGGTATTTTACGTTTTCTATGCAGTATTTTCCCGATC</left_flank>
        <right_flank>ATGAAATACAGAATGGAGGCTTAAATCGGATCATTCTTAATGAATTTGAG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTATTTTTCTCCTCTAATTTATATCTAATTTCCCACAAAACAAATCCATTATGTATTCTATAAGCTTCTCCTCTCGTGCCTCATGTTCCACCCAATATGTAATCTTTCCCCAAATAATTTATAATTGTAGAAAATTTTCAAACTTATAATTGTCTTCTTCTCATCTTACTCTTAAATCGTATTTTTGCTGGTTTCTTTTGTTTTTTTCCTTTTTTACTGCTCTCCTCCTCGCTTTACTGCTTTATTCTTTTCACTCCGTTTTTATCATTGATTTACAGTAACCCGCCAAAAAATTCCAGAGGGAAAAATCCTCCCCGCATGCATTCCTTCTAAACCTGTTTTCTCAACTCTAGATGTTCTAATCTGAAAGCGTTCGCTTCTTTCTCTCTTTCCCGTATTTTTGCCTTCTGATCCCGATTTCCATGTTTTGGTCCACTGACACTGATTAATGAAATCTCTTTGGTATTTTACGTTTTCTATGCAGTATTTTCCCGATCAATGAAATACAGAATGGAGGCTTAAATCGGATCATTCTTAATGAATTTGAGAATTCGATAGAGCTCAATACATGCACTGAAAAAATAATTGCTGAGGCTGGGCGATAAAAATTTATTAGGTTCCATCTTCTGTATCCCAGGCAACCCATTTTCGTTATGATGGGGAAGGGATGGAAATTTGGGGTTTCATTCTCCAACCTTCTTTTTGAATCCCCTTCGTTTTTTCGAATTTTGTTGGAAGTATCAGTATATCGGTTTCTGTGAGGGAATTCAGAAAATTGTTGGAAGAAAAATAGTTCAAGATATTATTAGGGTACAAAAAAAAATAGGAGCTGTGGAAGAGAACCTGTGACCGTAGTCGAAGGTCCCACAACGAAAACTACAGTAATCTAAAAAATTTCGGAATATATTTTCTCGATGTTTTGTTATTTTTCCCTTGAAAAGTCGATAAATTAACTTAATGAATTCTTAATGAAATAAATTCTGAAAAGAAACAATTTT</canonical>
            <polymorphic>TTTTATTTTTCTCCTCTAATTTATATCTAATTTCCCACAAAACAAATCCATTATGTATTCTATAAGCTTCTCCTCTCGTGCCTCATGTTCCACCCAATATGTAATCTTTCCCCAAATAATTTATAATTGTAGAAAATTTTCAAACTTATAATTGTCTTCTTCTCATCTTACTCTTAAATCGTATTTTTGCTGGTTTCTTTTGTTTTTTTCCTTTTTTACTGCTCTCCTCCTCGCTTTACTGCTTTATTCTTTTCACTCCGTTTTTATCATTGATTTACAGTAACCCGCCAAAAAATTCCAGAGGGAAAAATCCTCCCCGCATGCATTCCTTCTAAACCTGTTTTCTCAACTCTAGATGTTCTAATCTGAAAGCGTTCGCTTCTTTCTCTCTTTCCCGTATTTTTGCCTTCTGATCCCGATTTCCATGTTTTGGTCCACTGACACTGATTAATGAAATCTCTTTGGTATTTTACGTTTTCTATGCAGTATTTTCCCGATCWATGAAATACAGAATGGAGGCTTAAATCGGATCATTCTTAATGAATTTGAGAATTCGATAGAGCTCAATACATGCACTGAAAAAATAATTGCTGAGGCTGGGCGATAAAAATTTATTAGGTTCCATCTTCTGTATCCCAGGCAACCCATTTTCGTTATGATGGGGAAGGGATGGAAATTTGGGGTTTCATTCTCCAACCTTCTTTTTGAATCCCCTTCGTTTTTTCGAATTTTGTTGGAAGTATCAGTATATCGGTTTCTGTGAGGGAATTCAGAAAATTGTTGGAAGAAAAATAGTTCAAGATATTATTAGGGTACAAAAAAAAATAGGAGCTGTGGAAGAGAACCTGTGACCGTAGTCGAAGGTCCCACAACGAAAACTACAGTAATCTAAAAAATTTCGGAATATATTTTCTCGATGTTTTGTTATTTTTCCCTTGAAAAGTCGATAAATTAACTTAATGAATTCTTAATGAAATAAATTCTGAAAAGAAACAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCTTCTAAACCTGTTTTCTC</pcr_primer_p1>
		<pcr_primer_p2>TATTGAGCTCTATCGAATTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATTCCTTCTAAACCTGTTTTCTCAACTCTAGATGTTCTAATCTGAAAGCGTTCGCTTCTTTCTCTCTTTCCCGTATTTTTGCCTTCTGATCCCGATTTCCATGTTTTGGTCCACTGACACTGATTAATGAAATCTCTTTGGTATTTTACGTTTTCTATGCAGTATTTTCCCGATCAATGAAATACAGAATGGAGGCTTAAATCGGATCATTCTTAATGAATTTGAGAATTCGATAGAGCTCAATA</canonical_amplicon>
		<polymorphic_amplicon>ATTCCTTCTAAACCTGTTTTCTCAACTCTAGATGTTCTAATCTGAAAGCGTTCGCTTCTTTCTCTCTTTCCCGTATTTTTGCCTTCTGATCCCGATTTCCATGTTTTGGTCCACTGACACTGATTAATGAAATCTCTTTGGTATTTTACGTTTTCTATGCAGTATTTTCCCGATCWATGAAATACAGAATGGAGGCTTAAATCGGATCATTCTTAATGAATTTGAGAATTCGATAGAGCTCAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7281</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>560205</contig_pos>
        <strand>+</strand>
        <context>GATGTTCAAC[A/G]GCTATATGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGGCATTCTGTAGAGAGAAATAGAAGGGAGGATTCATGGATGTTCAAC</left_flank>
        <right_flank>GCTATATGTTCGCTCTTATCAGTTTACATTTGTCTCATTTGTCTCATTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATACCGTTCTATCAAAGAAAACATAGCCTGACAAGAGTGTATTCATGAATCAGCTGACTGAAAAATGAATTTTTTCCAATTCCCAGCTTAACCATCTCTTCTCAGCTTTCCCCTATTTTTGATGATCATTAAGCTGGACATTCGTCCTACCAAACTTGTCTAATTGTCCCATCCATCTTACCTGAATAAAGTCGAATGTTTTTTGGGGAAAAACAAGATGCAACTACTGTCATTCTCGAGTGGAAAAATCGCAAATATTATTTGTTTTTTTTGGCATATTCAGAATCCTCGTTATGCTTCAACGGAAGCTACAAGTTCTGCCCTTTGAATATTAGCATCCCCTGTAAATCGCGTATCGAAAAGATTGCGTAACCATTCGTCTCTCTCTTTTTTCTCTATACATCGTCTAAGCTTAATCTCACTTTCTATCGTAATTCATTCTTCGGATAAATGGCATTCTGTAGAGAGAAATAGAAGGGAGGATTCATGGATGTTCAACAGCTATATGTTCGCTCTTATCAGTTTACATTTGTCTCATTTGTCTCATTTATCTTCTTTATTTTGTGTTAATTGAATGACAGAGATGAATACGATGTGTGACGTAGAACTTGCTGAATGTTAACATTATTTCTGAAATCTCGCTAAACTAACGAGGGGTTCTGATATTCAGTTTTTAAATCTCGATTTTCACCTTTAAAAATTCTCGATCATCAGTTGTAAAACTCTATTTTTTTTTGCTTCAAAATCCCAATTTTTGGTTTTAAAAATTCGGATTTCTATGATTTCTGTGCCAAAATCTACAACAGAAAATTCCAGAACCGTTCCAAAACTACCTCCTTTTTACAGCAAATTTTTGGTTACTGCATTTCTGTACTCCCAGTTCAATTATTTACTTTCATCTGTAAAATCTAGATTTTTAGATCTAAAATCCCGATTTCTAGCTTTAAGCTAAAAATCCTTGACTTTCAGCTGTAAAATCCTGATTTTCAGCTTCTAAAAT</canonical>
            <polymorphic>ATACCGTTCTATCAAAGAAAACATAGCCTGACAAGAGTGTATTCATGAATCAGCTGACTGAAAAATGAATTTTTTCCAATTCCCAGCTTAACCATCTCTTCTCAGCTTTCCCCTATTTTTGATGATCATTAAGCTGGACATTCGTCCTACCAAACTTGTCTAATTGTCCCATCCATCTTACCTGAATAAAGTCGAATGTTTTTTGGGGAAAAACAAGATGCAACTACTGTCATTCTCGAGTGGAAAAATCGCAAATATTATTTGTTTTTTTTGGCATATTCAGAATCCTCGTTATGCTTCAACGGAAGCTACAAGTTCTGCCCTTTGAATATTAGCATCCCCTGTAAATCGCGTATCGAAAAGATTGCGTAACCATTCGTCTCTCTCTTTTTTCTCTATACATCGTCTAAGCTTAATCTCACTTTCTATCGTAATTCATTCTTCGGATAAATGGCATTCTGTAGAGAGAAATAGAAGGGAGGATTCATGGATGTTCAACRGCTATATGTTCGCTCTTATCAGTTTACATTTGTCTCATTTGTCTCATTTATCTTCTTTATTTTGTGTTAATTGAATGACAGAGATGAATACGATGTGTGACGTAGAACTTGCTGAATGTTAACATTATTTCTGAAATCTCGCTAAACTAACGAGGGGTTCTGATATTCAGTTTTTAAATCTCGATTTTCACCTTTAAAAATTCTCGATCATCAGTTGTAAAACTCTATTTTTTTTTGCTTCAAAATCCCAATTTTTGGTTTTAAAAATTCGGATTTCTATGATTTCTGTGCCAAAATCTACAACAGAAAATTCCAGAACCGTTCCAAAACTACCTCCTTTTTACAGCAAATTTTTGGTTACTGCATTTCTGTACTCCCAGTTCAATTATTTACTTTCATCTGTAAAATCTAGATTTTTAGATCTAAAATCCCGATTTCTAGCTTTAAGCTAAAAATCCTTGACTTTCAGCTGTAAAATCCTGATTTTCAGCTTCTAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>440 175 103 90 53 33 28 21 21 19 10 7</canonical_bands>
                <polymorphic_bands>530 175 103 53 33 28 21 21 19 10 7</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>440 175 103 90 33 28 27 26 21 21 19 10 7</canonical_bands>
                <polymorphic_bands>530 175 103 33 28 27 26 21 21 19 10 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAACCATTCGTCTCTCTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTCTACGTCACACATCGTAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTAACCATTCGTCTCTCTCTTTTTTCTCTATACATCGTCTAAGCTTAATCTCACTTTCTATCGTAATTCATTCTTCGGATAAATGGCATTCTGTAGAGAGAAATAGAAGGGAGGATTCATGGATGTTCAACAGCTATATGTTCGCTCTTATCAGTTTACATTTGTCTCATTTGTCTCATTTATCTTCTTTATTTTGTGTTAATTGAATGACAGAGATGAATACGATGTGTGACGTAGAACTT</canonical_amplicon>
		<polymorphic_amplicon>GTAACCATTCGTCTCTCTCTTTTTTCTCTATACATCGTCTAAGCTTAATCTCACTTTCTATCGTAATTCATTCTTCGGATAAATGGCATTCTGTAGAGAGAAATAGAAGGGAGGATTCATGGATGTTCAACRGCTATATGTTCGCTCTTATCAGTTTACATTTGTCTCATTTGTCTCATTTATCTTCTTTATTTTGTGTTAATTGAATGACAGAGATGAATACGATGTGTGACGTAGAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7282</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>560464</contig_pos>
        <strand></strand>
        <context>CAATTTTTGG[T/C]TTTAAAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CATCAGTTGTAAAACTCTATTTTTTTTTGCTTCAAAATCCCAATTTTTGG</left_flank>
        <right_flank>TTTAAAAATTCGGATTTCTATGATTTCTGTGCCAAAATCTACAACAGAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGTTTTTTTTGGCATATTCAGAATCCTCGTTATGCTTCAACGGAAGCTACAAGTTCTGCCCTTTGAATATTAGCATCCCCTGTAAATCGCGTATCGAAAAGATTGCGTAACCATTCGTCTCTCTCTTTTTTCTCTATACATCGTCTAAGCTTAATCTCACTTTCTATCGTAATTCATTCTTCGGATAAATGGCATTCTGTAGAGAGAAATAGAAGGGAGGATTCATGGATGTTCAACAGCTATATGTTCGCTCTTATCAGTTTACATTTGTCTCATTTGTCTCATTTATCTTCTTTATTTTGTGTTAATTGAATGACAGAGATGAATACGATGTGTGACGTAGAACTTGCTGAATGTTAACATTATTTCTGAAATCTCGCTAAACTAACGAGGGGTTCTGATATTCAGTTTTTAAATCTCGATTTTCACCTTTAAAAATTCTCGATCATCAGTTGTAAAACTCTATTTTTTTTTGCTTCAAAATCCCAATTTTTGGTTTTAAAAATTCGGATTTCTATGATTTCTGTGCCAAAATCTACAACAGAAAATTCCAGAACCGTTCCAAAACTACCTCCTTTTTACAGCAAATTTTTGGTTACTGCATTTCTGTACTCCCAGTTCAATTATTTACTTTCATCTGTAAAATCTAGATTTTTAGATCTAAAATCCCGATTTCTAGCTTTAAGCTAAAAATCCTTGACTTTCAGCTGTAAAATCCTGATTTTCAGCTTCTAAAATCTCGTTTTCGGAAGCGATATACTTTTACTGTAAATTTTTGGTTACTGTATCTCTGTGGTTCAATTTTTTACATGTGCTCTTAGGTTAGGTTTTCATTTTTCGATCCGGGAAATCAGGTACCGAAGAAACTGAATTTATATTTCAGTATGACTTTATTATGAAAATGTGCTCCCACAACAGCAATATCCTAATCCCCCTTCCTCTCCGTTCCACCAGAATCTCTCAAAAAAGATCAGACTTTTTTGAAAGGCACAAATTT</canonical>
            <polymorphic>ATTTGTTTTTTTTGGCATATTCAGAATCCTCGTTATGCTTCAACGGAAGCTACAAGTTCTGCCCTTTGAATATTAGCATCCCCTGTAAATCGCGTATCGAAAAGATTGCGTAACCATTCGTCTCTCTCTTTTTTCTCTATACATCGTCTAAGCTTAATCTCACTTTCTATCGTAATTCATTCTTCGGATAAATGGCATTCTGTAGAGAGAAATAGAAGGGAGGATTCATGGATGTTCAACAGCTATATGTTCGCTCTTATCAGTTTACATTTGTCTCATTTGTCTCATTTATCTTCTTTATTTTGTGTTAATTGAATGACAGAGATGAATACGATGTGTGACGTAGAACTTGCTGAATGTTAACATTATTTCTGAAATCTCGCTAAACTAACGAGGGGTTCTGATATTCAGTTTTTAAATCTCGATTTTCACCTTTAAAAATTCTCGATCATCAGTTGTAAAACTCTATTTTTTTTTGCTTCAAAATCCCAATTTTTGGYTTTAAAAATTCGGATTTCTATGATTTCTGTGCCAAAATCTACAACAGAAAATTCCAGAACCGTTCCAAAACTACCTCCTTTTTACAGCAAATTTTTGGTTACTGCATTTCTGTACTCCCAGTTCAATTATTTACTTTCATCTGTAAAATCTAGATTTTTAGATCTAAAATCCCGATTTCTAGCTTTAAGCTAAAAATCCTTGACTTTCAGCTGTAAAATCCTGATTTTCAGCTTCTAAAATCTCGTTTTCGGAAGCGATATACTTTTACTGTAAATTTTTGGTTACTGTATCTCTGTGGTTCAATTTTTTACATGTGCTCTTAGGTTAGGTTTTCATTTTTCGATCCGGGAAATCAGGTACCGAAGAAACTGAATTTATATTTCAGTATGACTTTATTATGAAAATGTGCTCCCACAACAGCAATATCCTAATCCCCCTTCCTCTCCGTTCCACCAGAATCTCTCAAAAAAGATCAGACTTTTTTGAAAGGCACAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGAATGACAGAGATGAATACG</pcr_primer_p1>
		<pcr_primer_p2>GTTCTGGAATTTTCTGTTGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTGAATGACAGAGATGAATACGATGTGTGACGTAGAACTTGCTGAATGTTAACATTATTTCTGAAATCTCGCTAAACTAACGAGGGGTTCTGATATTCAGTTTTTAAATCTCGATTTTCACCTTTAAAAATTCTCGATCATCAGTTGTAAAACTCTATTTTTTTTTGCTTCAAAATCCCAATTTTTGGTTTTAAAAATTCGGATTTCTATGATTTCTGTGCCAAAATCTACAACAGAAAATTCCAGAAC</canonical_amplicon>
		<polymorphic_amplicon>ATTGAATGACAGAGATGAATACGATGTGTGACGTAGAACTTGCTGAATGTTAACATTATTTCTGAAATCTCGCTAAACTAACGAGGGGTTCTGATATTCAGTTTTTAAATCTCGATTTTCACCTTTAAAAATTCTCGATCATCAGTTGTAAAACTCTATTTTTTTTTGCTTCAAAATCCCAATTTTTGGYTTTAAAAATTCGGATTTCTATGATTTCTGTGCCAAAATCTACAACAGAAAATTCCAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7283</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>563179</contig_pos>
        <strand></strand>
        <context>AGCGAAGTTC[A/T]TAGATAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATAAATACGAAATTGTGTTCCGGCCTCTTTCTGACACGAGCGAAGTTC</left_flank>
        <right_flank>TAGATAAATTCAGATATCTTTCCTTTCACCTGGATGAGGAATAATTGACC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTTAATCGGCAATTCCAAGAACAATGACAACTTTTTTTTCAGAAGTTTCCAAATAACGCAATACACTCAATATTTATGTTTCTTAAGTTTGAAATTCTTCCAAAAGTTATTCTACTCCTGACCGCTTCATGAATCTTCTTCTTCCTCCATTTGGTCCTTATTTACAGTTACTAGTCACACTCTTCTCCAAAATATACTCGATTTCAATCGTTTTCTTCGAACAAGAAGTCGTCGTTTTCAAAGGGAAAGCAAAAGGAACAAAAGCAATTTGAAACGGTGTGAAATGAAATAAGACGACCAAAACGATTTGTTTTTCTAATGACTATATATTTTTTGGAACCACCAAGAGAAAGGCGGAACTTCTGAGAAACATTTTAAAAACTCTCTTTGTTCCATATTTTCTTCTATTTCTGATAAAATGGATGTTTCAACAAAAAATAGGGCTGAAATAAATACGAAATTGTGTTCCGGCCTCTTTCTGACACGAGCGAAGTTCATAGATAAATTCAGATATCTTTCCTTTCACCTGGATGAGGAATAATTGACCCATGAAAAAATAACTGTACGGCCGATTAATTACCGTATTATTTCGTATGATGGTAGGCCACCGATATCATATATAAAAATGCCGATATTATGATAAATAATTTATCAGTTAACAATTTTTTATATCTTTCACAGAAATCGAGATAATTGAGCTTCAAGTTGAGGGATTCGTAAGGGGGAATACGGAGTTCGAAACAAATCCCAATTGTTGCGCAGCTTATAGCAATGAAGGCACCTCAGATGCGAAAATTCTAATTAGATCCCCTTCAAACCCAAATTTTCCCACTCTCTTCTATTTAAAAAATCGGGGCCCGATTGTTGATCATCAACCTTTTTAACCTACGCATCCACTTTCTCGTTTTTTCCTCTCTTCCTCTTTTCGATTTCACTTCAAAAAACTCTCGAAAAGATATCGTAGTATAACCGTTGATCTTCCCCAATTATTCATAAA</canonical>
            <polymorphic>AAACTTAATCGGCAATTCCAAGAACAATGACAACTTTTTTTTCAGAAGTTTCCAAATAACGCAATACACTCAATATTTATGTTTCTTAAGTTTGAAATTCTTCCAAAAGTTATTCTACTCCTGACCGCTTCATGAATCTTCTTCTTCCTCCATTTGGTCCTTATTTACAGTTACTAGTCACACTCTTCTCCAAAATATACTCGATTTCAATCGTTTTCTTCGAACAAGAAGTCGTCGTTTTCAAAGGGAAAGCAAAAGGAACAAAAGCAATTTGAAACGGTGTGAAATGAAATAAGACGACCAAAACGATTTGTTTTTCTAATGACTATATATTTTTTGGAACCACCAAGAGAAAGGCGGAACTTCTGAGAAACATTTTAAAAACTCTCTTTGTTCCATATTTTCTTCTATTTCTGATAAAATGGATGTTTCAACAAAAAATAGGGCTGAAATAAATACGAAATTGTGTTCCGGCCTCTTTCTGACACGAGCGAAGTTCWTAGATAAATTCAGATATCTTTCCTTTCACCTGGATGAGGAATAATTGACCCATGAAAAAATAACTGTACGGCCGATTAATTACCGTATTATTTCGTATGATGGTAGGCCACCGATATCATATATAAAAATGCCGATATTATGATAAATAATTTATCAGTTAACAATTTTTTATATCTTTCACAGAAATCGAGATAATTGAGCTTCAAGTTGAGGGATTCGTAAGGGGGAATACGGAGTTCGAAACAAATCCCAATTGTTGCGCAGCTTATAGCAATGAAGGCACCTCAGATGCGAAAATTCTAATTAGATCCCCTTCAAACCCAAATTTTCCCACTCTCTTCTATTTAAAAAATCGGGGCCCGATTGTTGATCATCAACCTTTTTAACCTACGCATCCACTTTCTCGTTTTTTCCTCTCTTCCTCTTTTCGATTTCACTTCAAAAAACTCTCGAAAAGATATCGTAGTATAACCGTTGATCTTCCCCAATTATTCATAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACGATTTGTTTTTCTAATGAC</pcr_primer_p1>
		<pcr_primer_p2>ATGGGTCAATTATTCCTCATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACGATTTGTTTTTCTAATGACTATATATTTTTTGGAACCACCAAGAGAAAGGCGGAACTTCTGAGAAACATTTTAAAAACTCTCTTTGTTCCATATTTTCTTCTATTTCTGATAAAATGGATGTTTCAACAAAAAATAGGGCTGAAATAAATACGAAATTGTGTTCCGGCCTCTTTCTGACACGAGCGAAGTTCATAGATAAATTCAGATATCTTTCCTTTCACCTGGATGAGGAATAATTGACCCAT</canonical_amplicon>
		<polymorphic_amplicon>AAACGATTTGTTTTTCTAATGACTATATATTTTTTGGAACCACCAAGAGAAAGGCGGAACTTCTGAGAAACATTTTAAAAACTCTCTTTGTTCCATATTTTCTTCTATTTCTGATAAAATGGATGTTTCAACAAAAAATAGGGCTGAAATAAATACGAAATTGTGTTCCGGCCTCTTTCTGACACGAGCGAAGTTCWTAGATAAATTCAGATATCTTTCCTTTCACCTGGATGAGGAATAATTGACCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7284</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>563115</contig_pos>
        <strand></strand>
        <context>ATGTTTCAAC[A/G]AAAAATAGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTCTTTGTTCCATATTTTCTTCTATTTCTGATAAAATGGATGTTTCAAC</left_flank>
        <right_flank>AAAAATAGGGCTGAAATAAATACGAAATTGTGTTCCGGCCTCTTTCTGAC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGTTAAATCGCGCCGAAGGCGCACCAGCCATTCCCATTTCCAGACCTTTCTAATAATTTTACAAACTTAATCGGCAATTCCAAGAACAATGACAACTTTTTTTTCAGAAGTTTCCAAATAACGCAATACACTCAATATTTATGTTTCTTAAGTTTGAAATTCTTCCAAAAGTTATTCTACTCCTGACCGCTTCATGAATCTTCTTCTTCCTCCATTTGGTCCTTATTTACAGTTACTAGTCACACTCTTCTCCAAAATATACTCGATTTCAATCGTTTTCTTCGAACAAGAAGTCGTCGTTTTCAAAGGGAAAGCAAAAGGAACAAAAGCAATTTGAAACGGTGTGAAATGAAATAAGACGACCAAAACGATTTGTTTTTCTAATGACTATATATTTTTTGGAACCACCAAGAGAAAGGCGGAACTTCTGAGAAACATTTTAAAAACTCTCTTTGTTCCATATTTTCTTCTATTTCTGATAAAATGGATGTTTCAACAAAAAATAGGGCTGAAATAAATACGAAATTGTGTTCCGGCCTCTTTCTGACACGAGCGAAGTTCATAGATAAATTCAGATATCTTTCCTTTCACCTGGATGAGGAATAATTGACCCATGAAAAAATAACTGTACGGCCGATTAATTACCGTATTATTTCGTATGATGGTAGGCCACCGATATCATATATAAAAATGCCGATATTATGATAAATAATTTATCAGTTAACAATTTTTTATATCTTTCACAGAAATCGAGATAATTGAGCTTCAAGTTGAGGGATTCGTAAGGGGGAATACGGAGTTCGAAACAAATCCCAATTGTTGCGCAGCTTATAGCAATGAAGGCACCTCAGATGCGAAAATTCTAATTAGATCCCCTTCAAACCCAAATTTTCCCACTCTCTTCTATTTAAAAAATCGGGGCCCGATTGTTGATCATCAACCTTTTTAACCTACGCATCCACTTTCTCGTTTTTTCCTCTCTTCCTCTTTTCGATTTC</canonical>
            <polymorphic>TAGGTTAAATCGCGCCGAAGGCGCACCAGCCATTCCCATTTCCAGACCTTTCTAATAATTTTACAAACTTAATCGGCAATTCCAAGAACAATGACAACTTTTTTTTCAGAAGTTTCCAAATAACGCAATACACTCAATATTTATGTTTCTTAAGTTTGAAATTCTTCCAAAAGTTATTCTACTCCTGACCGCTTCATGAATCTTCTTCTTCCTCCATTTGGTCCTTATTTACAGTTACTAGTCACACTCTTCTCCAAAATATACTCGATTTCAATCGTTTTCTTCGAACAAGAAGTCGTCGTTTTCAAAGGGAAAGCAAAAGGAACAAAAGCAATTTGAAACGGTGTGAAATGAAATAAGACGACCAAAACGATTTGTTTTTCTAATGACTATATATTTTTTGGAACCACCAAGAGAAAGGCGGAACTTCTGAGAAACATTTTAAAAACTCTCTTTGTTCCATATTTTCTTCTATTTCTGATAAAATGGATGTTTCAACRAAAAATAGGGCTGAAATAAATACGAAATTGTGTTCCGGCCTCTTTCTGACACGAGCGAAGTTCATAGATAAATTCAGATATCTTTCCTTTCACCTGGATGAGGAATAATTGACCCATGAAAAAATAACTGTACGGCCGATTAATTACCGTATTATTTCGTATGATGGTAGGCCACCGATATCATATATAAAAATGCCGATATTATGATAAATAATTTATCAGTTAACAATTTTTTATATCTTTCACAGAAATCGAGATAATTGAGCTTCAAGTTGAGGGATTCGTAAGGGGGAATACGGAGTTCGAAACAAATCCCAATTGTTGCGCAGCTTATAGCAATGAAGGCACCTCAGATGCGAAAATTCTAATTAGATCCCCTTCAAACCCAAATTTTCCCACTCTCTTCTATTTAAAAAATCGGGGCCCGATTGTTGATCATCAACCTTTTTAACCTACGCATCCACTTTCTCGTTTTTTCCTCTCTTCCTCTTTTCGATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGAAATAAGACGACCAAAA</pcr_primer_p1>
		<pcr_primer_p2>GGTGAAAGGAAAGATATCTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAATGAAATAAGACGACCAAAACGATTTGTTTTTCTAATGACTATATATTTTTTGGAACCACCAAGAGAAAGGCGGAACTTCTGAGAAACATTTTAAAAACTCTCTTTGTTCCATATTTTCTTCTATTTCTGATAAAATGGATGTTTCAACAAAAAATAGGGCTGAAATAAATACGAAATTGTGTTCCGGCCTCTTTCTGACACGAGCGAAGTTCATAGATAAATTCAGATATCTTTCCTTTCACC</canonical_amplicon>
		<polymorphic_amplicon>AAATGAAATAAGACGACCAAAACGATTTGTTTTTCTAATGACTATATATTTTTTGGAACCACCAAGAGAAAGGCGGAACTTCTGAGAAACATTTTAAAAACTCTCTTTGTTCCATATTTTCTTCTATTTCTGATAAAATGGATGTTTCAACRAAAAATAGGGCTGAAATAAATACGAAATTGTGTTCCGGCCTCTTTCTGACACGAGCGAAGTTCATAGATAAATTCAGATATCTTTCCTTTCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7285</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>562900</contig_pos>
        <strand></strand>
        <context>TCGTTTTCTT[C/T]GAACAAGAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTACTAGTCACACTCTTCTCCAAAATATACTCGATTTCAATCGTTTTCTT</left_flank>
        <right_flank>GAACAAGAAGTCGTCGTTTTCAAAGGGAAAGCAAAAGGAACAAAAGCAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGGTGTGATTTCACAGAGAACTTTCTTTCAACACGTGGATGTTTTTTTAAACGTAGACGGAAGGAGAGAGCTTGGCCTCATATTGACTGAATTATTAATTTATTGCGTTACGTGAACAATTTTTTTTAACTTGAAAATTAAATATATTATGACTTGACTTTTTGAAAAGGAGAAATCAAAAAGTGAGGAGCGGAGCGGCGAGCTGTAAAGTAAATAGGTTAAATCGCGCCGAAGGCGCACCAGCCATTCCCATTTCCAGACCTTTCTAATAATTTTACAAACTTAATCGGCAATTCCAAGAACAATGACAACTTTTTTTTCAGAAGTTTCCAAATAACGCAATACACTCAATATTTATGTTTCTTAAGTTTGAAATTCTTCCAAAAGTTATTCTACTCCTGACCGCTTCATGAATCTTCTTCTTCCTCCATTTGGTCCTTATTTACAGTTACTAGTCACACTCTTCTCCAAAATATACTCGATTTCAATCGTTTTCTTCGAACAAGAAGTCGTCGTTTTCAAAGGGAAAGCAAAAGGAACAAAAGCAATTTGAAACGGTGTGAAATGAAATAAGACGACCAAAACGATTTGTTTTTCTAATGACTATATATTTTTTGGAACCACCAAGAGAAAGGCGGAACTTCTGAGAAACATTTTAAAAACTCTCTTTGTTCCATATTTTCTTCTATTTCTGATAAAATGGATGTTTCAACAAAAAATAGGGCTGAAATAAATACGAAATTGTGTTCCGGCCTCTTTCTGACACGAGCGAAGTTCATAGATAAATTCAGATATCTTTCCTTTCACCTGGATGAGGAATAATTGACCCATGAAAAAATAACTGTACGGCCGATTAATTACCGTATTATTTCGTATGATGGTAGGCCACCGATATCATATATAAAAATGCCGATATTATGATAAATAATTTATCAGTTAACAATTTTTTATATCTTTCACAGAAATCGAGATAATTGAGCTTCAAGTTGAGGGATTCGT</canonical>
            <polymorphic>AGGGTGTGATTTCACAGAGAACTTTCTTTCAACACGTGGATGTTTTTTTAAACGTAGACGGAAGGAGAGAGCTTGGCCTCATATTGACTGAATTATTAATTTATTGCGTTACGTGAACAATTTTTTTTAACTTGAAAATTAAATATATTATGACTTGACTTTTTGAAAAGGAGAAATCAAAAAGTGAGGAGCGGAGCGGCGAGCTGTAAAGTAAATAGGTTAAATCGCGCCGAAGGCGCACCAGCCATTCCCATTTCCAGACCTTTCTAATAATTTTACAAACTTAATCGGCAATTCCAAGAACAATGACAACTTTTTTTTCAGAAGTTTCCAAATAACGCAATACACTCAATATTTATGTTTCTTAAGTTTGAAATTCTTCCAAAAGTTATTCTACTCCTGACCGCTTCATGAATCTTCTTCTTCCTCCATTTGGTCCTTATTTACAGTTACTAGTCACACTCTTCTCCAAAATATACTCGATTTCAATCGTTTTCTTYGAACAAGAAGTCGTCGTTTTCAAAGGGAAAGCAAAAGGAACAAAAGCAATTTGAAACGGTGTGAAATGAAATAAGACGACCAAAACGATTTGTTTTTCTAATGACTATATATTTTTTGGAACCACCAAGAGAAAGGCGGAACTTCTGAGAAACATTTTAAAAACTCTCTTTGTTCCATATTTTCTTCTATTTCTGATAAAATGGATGTTTCAACAAAAAATAGGGCTGAAATAAATACGAAATTGTGTTCCGGCCTCTTTCTGACACGAGCGAAGTTCATAGATAAATTCAGATATCTTTCCTTTCACCTGGATGAGGAATAATTGACCCATGAAAAAATAACTGTACGGCCGATTAATTACCGTATTATTTCGTATGATGGTAGGCCACCGATATCATATATAAAAATGCCGATATTATGATAAATAATTTATCAGTTAACAATTTTTTATATCTTTCACAGAAATCGAGATAATTGAGCTTCAAGTTGAGGGATTCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>481 468 32 19</canonical_bands>
                <polymorphic_bands>487 481 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATCTTCTTCTTCCTCCATTT</pcr_primer_p1>
		<pcr_primer_p2>TTAAAATGTTTCTCAGAAGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAATCTTCTTCTTCCTCCATTTGGTCCTTATTTACAGTTACTAGTCACACTCTTCTCCAAAATATACTCGATTTCAATCGTTTTCTTCGAACAAGAAGTCGTCGTTTTCAAAGGGAAAGCAAAAGGAACAAAAGCAATTTGAAACGGTGTGAAATGAAATAAGACGACCAAAACGATTTGTTTTTCTAATGACTATATATTTTTTGGAACCACCAAGAGAAAGGCGGAACTTCTGAGAAACATTTTAA</canonical_amplicon>
		<polymorphic_amplicon>GAATCTTCTTCTTCCTCCATTTGGTCCTTATTTACAGTTACTAGTCACACTCTTCTCCAAAATATACTCGATTTCAATCGTTTTCTTYGAACAAGAAGTCGTCGTTTTCAAAGGGAAAGCAAAAGGAACAAAAGCAATTTGAAACGGTGTGAAATGAAATAAGACGACCAAAACGATTTGTTTTTCTAATGACTATATATTTTTTGGAACCACCAAGAGAAAGGCGGAACTTCTGAGAAACATTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7286</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>691956</contig_pos>
        <strand>+</strand>
        <context>AAGAATAACT[C/T]AAAGTTTGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGATATCGTAGATGGAAGGATATCAAAAATAAGTAGGAAAAAGAATAACT</left_flank>
        <right_flank>AAAGTTTGAAATCCTTATCATCGTTCAATTGAAATTTCAGTCCATTTCAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAGAAGGAGAGACGGGGAGAAGAAATGGTTAAAAACGGAAATCCGGAAGTCAAGGAGAGACGATTAGAACACGCTCTCGTTGACACCTATTACCTGCTACTAGGTGCTCTACAAACCTTCCGGTGACACTTTTCGGTGTGTGCTTTTGGAATTTTCGGTGGGTTTGGTGAAACAAAACAAAACTAGAAAAATTGGGAAACTCAAAATTCAATTACCCTGAAACCTGTAATAAAAGGGACCCTAACTTTAACCTAAATTATCTCAGCTTCTGTCAAAGATACAAAAGAGGTGTCAACTGATAACTTGTTCATCATAATATCATTAACATTTTATCAGTTGACATATTTTTGATACCTTGCATAGCAGTCAAGGAGAATTAGCTCAAAATTTACAATGTAGAGCCCTTCAAGGGTTACGGTTGTCTGAAAACATACCATTTTGCAAGATTGATATCGTAGATGGAAGGATATCAAAAATAAGTAGGAAAAAGAATAACTCAAAGTTTGAAATCCTTATCATCGTTCAATTGAAATTTCAGTCCATTTCATAGACACCTGAATAATGGTTTTGAAAAAAAAAAAAAAAGTTAGAAAAATTTATAATTAGAAGAGAAATCGAGGAATTTGAGTTATTGTATTTTAAAAATTTATCGCACTTCTAAGAATAAGATTTTGCCCAGAGAAGTACATTTTTCCTATTTTCATTGGAATTCCAAAAACGAACATTACAGAGTGGCGCACAATTACCCAGAATGATAGGTATTTATGGTTGTCCAAAGATGAGCCAAAGATGGTTGTCCAAAGATGGGCGTAATGTTCTTCAAATTTTCATGAGATGAAGCAACTTTGACAAGCGATAACTCAGCTCGAAGATGGTCAAAAAATTCGAAAATTGGCCAGTTTATTGATGAGTTATTTGAAATTTCGCACTCCAAGTTTAAGCTAAATTTAACGCTTCACTCAAATTTTATAAAAACTATCATTCGGGTAATTCTGCTC</canonical>
            <polymorphic>AAGAGAAGGAGAGACGGGGAGAAGAAATGGTTAAAAACGGAAATCCGGAAGTCAAGGAGAGACGATTAGAACACGCTCTCGTTGACACCTATTACCTGCTACTAGGTGCTCTACAAACCTTCCGGTGACACTTTTCGGTGTGTGCTTTTGGAATTTTCGGTGGGTTTGGTGAAACAAAACAAAACTAGAAAAATTGGGAAACTCAAAATTCAATTACCCTGAAACCTGTAATAAAAGGGACCCTAACTTTAACCTAAATTATCTCAGCTTCTGTCAAAGATACAAAAGAGGTGTCAACTGATAACTTGTTCATCATAATATCATTAACATTTTATCAGTTGACATATTTTTGATACCTTGCATAGCAGTCAAGGAGAATTAGCTCAAAATTTACAATGTAGAGCCCTTCAAGGGTTACGGTTGTCTGAAAACATACCATTTTGCAAGATTGATATCGTAGATGGAAGGATATCAAAAATAAGTAGGAAAAAGAATAACTYAAAGTTTGAAATCCTTATCATCGTTCAATTGAAATTTCAGTCCATTTCATAGACACCTGAATAATGGTTTTGAAAAAAAAAAAAAAAGTTAGAAAAATTTATAATTAGAAGAGAAATCGAGGAATTTGAGTTATTGTATTTTAAAAATTTATCGCACTTCTAAGAATAAGATTTTGCCCAGAGAAGTACATTTTTCCTATTTTCATTGGAATTCCAAAAACGAACATTACAGAGTGGCGCACAATTACCCAGAATGATAGGTATTTATGGTTGTCCAAAGATGAGCCAAAGATGGTTGTCCAAAGATGGGCGTAATGTTCTTCAAATTTTCATGAGATGAAGCAACTTTGACAAGCGATAACTCAGCTCGAAGATGGTCAAAAAATTCGAAAATTGGCCAGTTTATTGATGAGTTATTTGAAATTTCGCACTCCAAGTTTAAGCTAAATTTAACGCTTCACTCAAATTTTATAAAAACTATCATTCGGGTAATTCTGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGCAAGATTGATATCGTAG</pcr_primer_p1>
		<pcr_primer_p2>ACTTCTCTGGGCAAAATCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGCAAGATTGATATCGTAGATGGAAGGATATCAAAAATAAGTAGGAAAAAGAATAACTCAAAGTTTGAAATCCTTATCATCGTTCAATTGAAATTTCAGTCCATTTCATAGACACCTGAATAATGGTTTTGAAAAAAAAAAAAAAAGTTAGAAAAATTTATAATTAGAAGAGAAATCGAGGAATTTGAGTTATTGTATTTTAAAAATTTATCGCACTTCTAAGAATAAGATTTTGCCCAGAGAAGT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGCAAGATTGATATCGTAGATGGAAGGATATCAAAAATAAGTAGGAAAAAGAATAACTYAAAGTTTGAAATCCTTATCATCGTTCAATTGAAATTTCAGTCCATTTCATAGACACCTGAATAATGGTTTTGAAAAAAAAAAAAAAAGTTAGAAAAATTTATAATTAGAAGAGAAATCGAGGAATTTGAGTTATTGTATTTTAAAAATTTATCGCACTTCTAAGAATAAGATTTTGCCCAGAGAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7287</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>698235</contig_pos>
        <strand>+</strand>
        <context>CTAATAAACA[A/G]ATCGTATTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTCTCTTGTCAGTTTTTGAACCAAATACAGAACTATTACTAATAAACA</left_flank>
        <right_flank>ATCGTATTCCAATTCTAAAGACTTTTTTGAAGTAAAAGTTGTAATAGAAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGAGAAAAAATATTGTATAATTGTGTATTCTTTTTCAGAGCTACAATCGTTGGTGCCAAATGCAAACTTTGCAAAATGCTGATTCATCAGGTTAGATTTTTTTTTTCATCAAATGCTAACTGCATCCGTTCAAATTGGTTTTTTTTCCAATAATTTTCATACTGAAATTTAAAAAACTGGTCGAGAAGTGACCCATCTTGGGATTTGATAACTATGATTTTTAACAATTGGATTTTGCAGCCAGGAAGTCACTACTGCTCCACGTGCGCATACCAGAAGGGAATTTGTGCAATGTGTGGAAAAAAGATTCTCAACACAAAAGGTCTTCGCCAAAGCATCACATAACTTCATGCAATTTGAAAATGATTCCAGTCAACACTAACTTATATTTGATCTCGTGTTCTAATCTGTGTTTCCATGCGCTTGTATATTTCTGCTAGTCCCCACTTCTCTCTTGTCAGTTTTTGAACCAAATACAGAACTATTACTAATAAACAGATCGTATTCCAATTCTAAAGACTTTTTTGAAGTAAAAGTTGTAATAGAACTCCACCTGTTCCTTGCATTTTGAACTCAATAATCTCATCCTACAGAAGTGGAGAAAATTGAGCTAGCTTGGCATTCTATTACAGTTTTTACGGTATTGTCAATTCAAAAAAATCGCGTAGAGGAACTTGTAAACAAAAAATGGTTACTGTAGACTAGGCTCCGATTTTTTTGTTTATCGTCTAGCTTCTAGATTTCGTTGCTAGAATCACTAGAACAAGACACATTCCTCCGAGAATAATCAATCCAAGTGCTGATAGAGAAAGAGTGACGATACAGTATACGAATGCAGACCAATAGAGAAGACCATCACACTGGGAACGAGTTGAATAAGAGGAGAAGACGAAAACGCTTCCAACGATTGTTCTGAAAGTAGACAGGTTTGAATTAAAATTGGATGAAAAACATCTACTCTAATACAGTTCGATAAACTAAAATAAAACCTGTTATAA</canonical>
            <polymorphic>ATTGAGAAAAAATATTGTATAATTGTGTATTCTTTTTCAGAGCTACAATCGTTGGTGCCAAATGCAAACTTTGCAAAATGCTGATTCATCAGGTTAGATTTTTTTTTTCATCAAATGCTAACTGCATCCGTTCAAATTGGTTTTTTTTCCAATAATTTTCATACTGAAATTTAAAAAACTGGTCGAGAAGTGACCCATCTTGGGATTTGATAACTATGATTTTTAACAATTGGATTTTGCAGCCAGGAAGTCACTACTGCTCCACGTGCGCATACCAGAAGGGAATTTGTGCAATGTGTGGAAAAAAGATTCTCAACACAAAAGGTCTTCGCCAAAGCATCACATAACTTCATGCAATTTGAAAATGATTCCAGTCAACACTAACTTATATTTGATCTCGTGTTCTAATCTGTGTTTCCATGCGCTTGTATATTTCTGCTAGTCCCCACTTCTCTCTTGTCAGTTTTTGAACCAAATACAGAACTATTACTAATAAACARATCGTATTCCAATTCTAAAGACTTTTTTGAAGTAAAAGTTGTAATAGAACTCCACCTGTTCCTTGCATTTTGAACTCAATAATCTCATCCTACAGAAGTGGAGAAAATTGAGCTAGCTTGGCATTCTATTACAGTTTTTACGGTATTGTCAATTCAAAAAAATCGCGTAGAGGAACTTGTAAACAAAAAATGGTTACTGTAGACTAGGCTCCGATTTTTTTGTTTATCGTCTAGCTTCTAGATTTCGTTGCTAGAATCACTAGAACAAGACACATTCCTCCGAGAATAATCAATCCAAGTGCTGATAGAGAAAGAGTGACGATACAGTATACGAATGCAGACCAATAGAGAAGACCATCACACTGGGAACGAGTTGAATAAGAGGAGAAGACGAAAACGCTTCCAACGATTGTTCTGAAAGTAGACAGGTTTGAATTAAAATTGGATGAAAAACATCTACTCTAATACAGTTCGATAAACTAAAATAAAACCTGTTATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>501 393 106</canonical_bands>
                <polymorphic_bands>607 393</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGATTCCAGTCAACACTAAC</pcr_primer_p1>
		<pcr_primer_p2>CTCAATTTTCTCCACTTCTGTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATGATTCCAGTCAACACTAACTTATATTTGATCTCGTGTTCTAATCTGTGTTTCCATGCGCTTGTATATTTCTGCTAGTCCCCACTTCTCTCTTGTCAGTTTTTGAACCAAATACAGAACTATTACTAATAAACAGATCGTATTCCAATTCTAAAGACTTTTTTGAAGTAAAAGTTGTAATAGAACTCCACCTGTTCCTTGCATTTTGAACTCAATAATCTCATCCTACAGAAGTGGAGAAAATTGAG</canonical_amplicon>
		<polymorphic_amplicon>AAATGATTCCAGTCAACACTAACTTATATTTGATCTCGTGTTCTAATCTGTGTTTCCATGCGCTTGTATATTTCTGCTAGTCCCCACTTCTCTCTTGTCAGTTTTTGAACCAAATACAGAACTATTACTAATAAACARATCGTATTCCAATTCTAAAGACTTTTTTGAAGTAAAAGTTGTAATAGAACTCCACCTGTTCCTTGCATTTTGAACTCAATAATCTCATCCTACAGAAGTGGAGAAAATTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7288</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>697864</contig_pos>
        <strand></strand>
        <context>TARCTGCATC[C/G]GTTCAAATTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGCTGATTCATCAGGTTAGATTTTTTTTTTCATCAAATGCTAACTGCATC</left_flank>
        <right_flank>GTTCAAATTGGTTTTTTTTCCAATAATTTTCATACTGAAATTTAAAAAAC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGAGCTTCAGGCTCATGCCCAACAGCAGTGATTCTGATCGATCTCTTATTTATTAATTTTTATCATATTTTGATCTGCTCGTTTCTTTGTGTATGACCTTGTTTTCTTAATGAAAAATTCGGTTTAAACAAAATGTCTCATATGGTAATATACGTACAATCGTAACACAGTATTTGCCCATTGACTATAAAAATTTACTGAGAACCTGGTTTTAGTGCAAAAATGGTTTGTGGAGATTGCGAAAAGAAGTTGGGGAAAATTGTTGGCGTGGATCCGTATCGAAACAAGAAAGTCAATCGGAATGCGGACGGAACTGGTCCCAAGACAATGACTACTAAGAATCGGCTGATTGGAGTTCAGAAAAAGTAAATTGAGAAAAAATATTGTATAATTGTGTATTCTTTTTCAGAGCTACAATCGTTGGTGCCAAATGCAAACTTTGCAAAATGCTGATTCATCAGGTTAGATTTTTTTTTTCATCAAATGCTAACTGCATCCGTTCAAATTGGTTTTTTTTCCAATAATTTTCATACTGAAATTTAAAAAACTGGTCGAGAAGTGACCCATCTTGGGATTTGATAACTATGATTTTTAACAATTGGATTTTGCAGCCAGGAAGTCACTACTGCTCCACGTGCGCATACCAGAAGGGAATTTGTGCAATGTGTGGAAAAAAGATTCTCAACACAAAAGGTCTTCGCCAAAGCATCACATAACTTCATGCAATTTGAAAATGATTCCAGTCAACACTAACTTATATTTGATCTCGTGTTCTAATCTGTGTTTCCATGCGCTTGTATATTTCTGCTAGTCCCCACTTCTCTCTTGTCAGTTTTTGAACCAAATACAGAACTATTACTAATAAACAGATCGTATTCCAATTCTAAAGACTTTTTTGAAGTAAAAGTTGTAATAGAACTCCACCTGTTCCTTGCATTTTGAACTCAATAATCTCATCCTACAGAAGTGGAGAAAATTGAGCTAGCTTGGCATTCTAT</canonical>
            <polymorphic>AATGAGCTTCAGGCTCATGCCCAACAGCAGTGATTCTGATCGATCTCTTATTTATTAATTTTTATCATATTTTGATCTGCTCGTTTCTTTGTGTATGACCTTGTTTTCTTAATGAAAAATTCGGTTTAAACAAAATGTCTCATATGGTAATATACGTACAATCGTAACACAGTATTTGCCCATTGACTATAAAAATTTACTGAGAACCTGGTTTTAGTGCAAAAATGGTTTGTGGAGATTGCGAAAAGAAGTTGGGGAAAATTGTTGGCGTGGATCCGTATCGAAACAAGAAAGTCAATCGGAATGCGGACGGAACTGGTCCCAAGACAATGACTACTAAGAATCGGCTGATTGGAGTTCAGAAAAAGTAAATTGAGAAAAAATATTGTATAATTGTGTATTCTTTTTCAGAGCTACAATCGTTGGTGCCAAATGCAAACTTTGCAAAATGCTGATTCATCAGGTTAGATTTTTTTTTTCATCAAATGCTAACTGCATCSGTTCAAATTGGTTTTTTTTCCAATAATTTTCATACTGAAATTTAAAAAACTGGTCGAGAAGTGACCCATCTTGGGATTTGATAACTATGATTTTTAACAATTGGATTTTGCAGCCAGGAAGTCACTACTGCTCCACGTGCGCATACCAGAAGGGAATTTGTGCAATGTGTGGAAAAAAGATTCTCAACACAAAAGGTCTTCGCCAAAGCATCACATAACTTCATGCAATTTGAAAATGATTCCAGTCAACACTAACTTATATTTGATCTCGTGTTCTAATCTGTGTTTCCATGCGCTTGTATATTTCTGCTAGTCCCCACTTCTCTCTTGTCAGTTTTTGAACCAAATACAGAACTATTACTAATAAACAGATCGTATTCCAATTCTAAAGACTTTTTTGAAGTAAAAGTTGTAATAGAACTCCACCTGTTCCTTGCATTTTGAACTCAATAATCTCATCCTACAGAAGTGGAGAAAATTGAGCTAGCTTGGCATTCTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGATTGGAGTTCAGAAAAAGTA</pcr_primer_p1>
		<pcr_primer_p2>CATAGTTATCAAATCCCAAGATG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CTGATTGGAGTTCAGAAAAAGTAAATTGAGAAAAAATATTGTATAATTGTGTATTCTTTTTCAGAGCTACAATCGTTGGTGCCAAATGCAAACTTTGCAAAATGCTGATTCATCAGGTTAGATTTTTTTTTTCATCAAATGCTAACTGCATCCGTTCAAATTGGTTTTTTTTCCAATAATTTTCATACTGAAATTTAAAAAACTGGTCGAGAAGTGACCCATCTTGGGATTTGATAACTATG</canonical_amplicon>
		<polymorphic_amplicon>CTGATTGGAGTTCAGAAAAAGTAAATTGAGAAAAAATATTGTATAATTGTGTATTCTTTTTCAGAGCTACAATCGTTGGTGCCAAATGCAAACTTTGCAAAATGCTGATTCATCAGGTTAGATTTTTTTTTTCATCAAATGCTAACTGCATCSGTTCAAATTGGTTTTTTTTCCAATAATTTTCATACTGAAATTTAAAAAACTGGTCGAGAAGTGACCCATCTTGGGATTTGATAACTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7289</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>697856</contig_pos>
        <strand></strand>
        <context>TCAAATGCTA[A/G]CTGCATCSGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGCAAAATGCTGATTCATCAGGTTAGATTTTTTTTTTCATCAAATGCTA</left_flank>
        <right_flank>CTGCATCCGTTCAAATTGGTTTTTTTTCCAATAATTTTCATACTGAAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTATCCAATGAGCTTCAGGCTCATGCCCAACAGCAGTGATTCTGATCGATCTCTTATTTATTAATTTTTATCATATTTTGATCTGCTCGTTTCTTTGTGTATGACCTTGTTTTCTTAATGAAAAATTCGGTTTAAACAAAATGTCTCATATGGTAATATACGTACAATCGTAACACAGTATTTGCCCATTGACTATAAAAATTTACTGAGAACCTGGTTTTAGTGCAAAAATGGTTTGTGGAGATTGCGAAAAGAAGTTGGGGAAAATTGTTGGCGTGGATCCGTATCGAAACAAGAAAGTCAATCGGAATGCGGACGGAACTGGTCCCAAGACAATGACTACTAAGAATCGGCTGATTGGAGTTCAGAAAAAGTAAATTGAGAAAAAATATTGTATAATTGTGTATTCTTTTTCAGAGCTACAATCGTTGGTGCCAAATGCAAACTTTGCAAAATGCTGATTCATCAGGTTAGATTTTTTTTTTCATCAAATGCTAACTGCATCCGTTCAAATTGGTTTTTTTTCCAATAATTTTCATACTGAAATTTAAAAAACTGGTCGAGAAGTGACCCATCTTGGGATTTGATAACTATGATTTTTAACAATTGGATTTTGCAGCCAGGAAGTCACTACTGCTCCACGTGCGCATACCAGAAGGGAATTTGTGCAATGTGTGGAAAAAAGATTCTCAACACAAAAGGTCTTCGCCAAAGCATCACATAACTTCATGCAATTTGAAAATGATTCCAGTCAACACTAACTTATATTTGATCTCGTGTTCTAATCTGTGTTTCCATGCGCTTGTATATTTCTGCTAGTCCCCACTTCTCTCTTGTCAGTTTTTGAACCAAATACAGAACTATTACTAATAAACAGATCGTATTCCAATTCTAAAGACTTTTTTGAAGTAAAAGTTGTAATAGAACTCCACCTGTTCCTTGCATTTTGAACTCAATAATCTCATCCTACAGAAGTGGAGAAAATTGAGCTAGCTTGG</canonical>
            <polymorphic>CTCTATCCAATGAGCTTCAGGCTCATGCCCAACAGCAGTGATTCTGATCGATCTCTTATTTATTAATTTTTATCATATTTTGATCTGCTCGTTTCTTTGTGTATGACCTTGTTTTCTTAATGAAAAATTCGGTTTAAACAAAATGTCTCATATGGTAATATACGTACAATCGTAACACAGTATTTGCCCATTGACTATAAAAATTTACTGAGAACCTGGTTTTAGTGCAAAAATGGTTTGTGGAGATTGCGAAAAGAAGTTGGGGAAAATTGTTGGCGTGGATCCGTATCGAAACAAGAAAGTCAATCGGAATGCGGACGGAACTGGTCCCAAGACAATGACTACTAAGAATCGGCTGATTGGAGTTCAGAAAAAGTAAATTGAGAAAAAATATTGTATAATTGTGTATTCTTTTTCAGAGCTACAATCGTTGGTGCCAAATGCAAACTTTGCAAAATGCTGATTCATCAGGTTAGATTTTTTTTTTCATCAAATGCTARCTGCATCCGTTCAAATTGGTTTTTTTTCCAATAATTTTCATACTGAAATTTAAAAAACTGGTCGAGAAGTGACCCATCTTGGGATTTGATAACTATGATTTTTAACAATTGGATTTTGCAGCCAGGAAGTCACTACTGCTCCACGTGCGCATACCAGAAGGGAATTTGTGCAATGTGTGGAAAAAAGATTCTCAACACAAAAGGTCTTCGCCAAAGCATCACATAACTTCATGCAATTTGAAAATGATTCCAGTCAACACTAACTTATATTTGATCTCGTGTTCTAATCTGTGTTTCCATGCGCTTGTATATTTCTGCTAGTCCCCACTTCTCTCTTGTCAGTTTTTGAACCAAATACAGAACTATTACTAATAAACAGATCGTATTCCAATTCTAAAGACTTTTTTGAAGTAAAAGTTGTAATAGAACTCCACCTGTTCCTTGCATTTTGAACTCAATAATCTCATCCTACAGAAGTGGAGAAAATTGAGCTAGCTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGATTGGAGTTCAGAAAAAGTA</pcr_primer_p1>
		<pcr_primer_p2>CATAGTTATCAAATCCCAAGATG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CTGATTGGAGTTCAGAAAAAGTAAATTGAGAAAAAATATTGTATAATTGTGTATTCTTTTTCAGAGCTACAATCGTTGGTGCCAAATGCAAACTTTGCAAAATGCTGATTCATCAGGTTAGATTTTTTTTTTCATCAAATGCTAACTGCATCCGTTCAAATTGGTTTTTTTTCCAATAATTTTCATACTGAAATTTAAAAAACTGGTCGAGAAGTGACCCATCTTGGGATTTGATAACTATG</canonical_amplicon>
		<polymorphic_amplicon>CTGATTGGAGTTCAGAAAAAGTAAATTGAGAAAAAATATTGTATAATTGTGTATTCTTTTTCAGAGCTACAATCGTTGGTGCCAAATGCAAACTTTGCAAAATGCTGATTCATCAGGTTAGATTTTTTTTTTCATCAAATGCTARCTGCATCCGTTCAAATTGGTTTTTTTTCCAATAATTTTCATACTGAAATTTAAAAAACTGGTCGAGAAGTGACCCATCTTGGGATTTGATAACTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7290</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>739841</contig_pos>
        <strand>+</strand>
        <context>GCAGCTAATT[A/G]CAATGCCCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGGTCCACGAGCCACTACTCCCGGTCTTTGCCACAATAAGCAGCTAATT</left_flank>
        <right_flank>CAATGCCCAATGACTTCTAAATCATCCCAACTGAAAAAAATGACTATTCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTATTCACTTCTGCGCACAAATGAGCACTTACAGAAAACGGCCGGTTGAGTGAGTTCGTTGCGTCATAGAACAATGAAAATATAATGGAAGGCTCGATGAACATGGTAATTGTTTTTTTTAATGATTTGAAATAGTCGAGGGTTCCAGTATAAGATTTCCCCTTTCGACTCGTTCAGAATGAAACCGAAAGAGATGCCGCCGGTTCTTTTACTCATTTAGCACATCAATTTTCTAATTTAAAATATCTCATTCTTCTCACTATTTTCTCACCTCTTTTGCGGAAAATCATACATTCCGATTAGTTTGTGTATCCTCGATTGGAATTAAAATGAGATTGGCGTTTTATGGGGGAATCATCAAAAGGAATGGATACCGTATCCTATTTCAACATGTTAAGAGTAAGAAGTGTAGAACGGGCGGATGGTTTTTAACATCATTACTTCGGTTCGGTCCACGAGCCACTACTCCCGGTCTTTGCCACAATAAGCAGCTAATTGCAATGCCCAATGACTTCTAAATCATCCCAACTGAAAAAAATGACTATTCTAATTTATTTTCTATTTTCTATACCTGTTTCTTCTCCTTCTCTCTATTCAAAAGCAAAATCATGTATTAATATGCGAGAGCGAAAACTCTGCGGGAGACACTCCTCATCTTGGGAGTTCAACCATCTGCGGGACGTCTTCAATTCTCAGTAATTGGTTTATGACACTTACGTAACCAATATGATATGTTCTCGTTTTGCGTTTTTCTAGCTCCTCGCGCATCTTGTCTTATGACATGGGCAGTGACGTAATGAGGAATTGAAAGAAGAGCTAATTGGCTAAGTACTGTAATACTGTAAAAATGAGAGAATATGGTTATTTATGTGGAGGGAAGATTTCAACAGTTCAGAGATTTCTGTAAATTTGCCAAGACAAACAAAACAATAAAATATCTTATTCAGTTAGTATCAGAAATACAAAAGGCAGATGCAAAGTGAATAGGATGAGCTTGC</canonical>
            <polymorphic>TCCTATTCACTTCTGCGCACAAATGAGCACTTACAGAAAACGGCCGGTTGAGTGAGTTCGTTGCGTCATAGAACAATGAAAATATAATGGAAGGCTCGATGAACATGGTAATTGTTTTTTTTAATGATTTGAAATAGTCGAGGGTTCCAGTATAAGATTTCCCCTTTCGACTCGTTCAGAATGAAACCGAAAGAGATGCCGCCGGTTCTTTTACTCATTTAGCACATCAATTTTCTAATTTAAAATATCTCATTCTTCTCACTATTTTCTCACCTCTTTTGCGGAAAATCATACATTCCGATTAGTTTGTGTATCCTCGATTGGAATTAAAATGAGATTGGCGTTTTATGGGGGAATCATCAAAAGGAATGGATACCGTATCCTATTTCAACATGTTAAGAGTAAGAAGTGTAGAACGGGCGGATGGTTTTTAACATCATTACTTCGGTTCGGTCCACGAGCCACTACTCCCGGTCTTTGCCACAATAAGCAGCTAATTRCAATGCCCAATGACTTCTAAATCATCCCAACTGAAAAAAATGACTATTCTAATTTATTTTCTATTTTCTATACCTGTTTCTTCTCCTTCTCTCTATTCAAAAGCAAAATCATGTATTAATATGCGAGAGCGAAAACTCTGCGGGAGACACTCCTCATCTTGGGAGTTCAACCATCTGCGGGACGTCTTCAATTCTCAGTAATTGGTTTATGACACTTACGTAACCAATATGATATGTTCTCGTTTTGCGTTTTTCTAGCTCCTCGCGCATCTTGTCTTATGACATGGGCAGTGACGTAATGAGGAATTGAAAGAAGAGCTAATTGGCTAAGTACTGTAATACTGTAAAAATGAGAGAATATGGTTATTTATGTGGAGGGAAGATTTCAACAGTTCAGAGATTTCTGTAAATTTGCCAAGACAAACAAAACAATAAAATATCTTATTCAGTTAGTATCAGAAATACAAAAGGCAGATGCAAAGTGAATAGGATGAGCTTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 477 23</canonical_bands>
                <polymorphic_bands>977 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCATCAAAAGGAATGGATAC</pcr_primer_p1>
		<pcr_primer_p2>GCTTTTGAATAGAGAGAAGGAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCATCAAAAGGAATGGATACCGTATCCTATTTCAACATGTTAAGAGTAAGAAGTGTAGAACGGGCGGATGGTTTTTAACATCATTACTTCGGTTCGGTCCACGAGCCACTACTCCCGGTCTTTGCCACAATAAGCAGCTAATTGCAATGCCCAATGACTTCTAAATCATCCCAACTGAAAAAAATGACTATTCTAATTTATTTTCTATTTTCTATACCTGTTTCTTCTCCTTCTCTCTATTCAAAAGC</canonical_amplicon>
		<polymorphic_amplicon>AATCATCAAAAGGAATGGATACCGTATCCTATTTCAACATGTTAAGAGTAAGAAGTGTAGAACGGGCGGATGGTTTTTAACATCATTACTTCGGTTCGGTCCACGAGCCACTACTCCCGGTCTTTGCCACAATAAGCAGCTAATTRCAATGCCCAATGACTTCTAAATCATCCCAACTGAAAAAAATGACTATTCTAATTTATTTTCTATTTTCTATACCTGTTTCTTCTCCTTCTCTCTATTCAAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7291</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>779659</contig_pos>
        <strand>+</strand>
        <context>ATTGAAGTAT[G/T]TCAGCATCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCCGAAGTTCGGAAAAATATTTTTGTATTTTACAATTATCATTGAAGTAT</left_flank>
        <right_flank>TCAGCATCTATTAATCAAGTACCACACTCACTTGTACCATGGTATCAATA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAGATGATATTCCAACGAGTGCTTGCAAATGAGGTTTCATCATAGGAGCTTGTGGTCGCTCGTCATCATCCATTTCCATATCTACTTGATTACGATTGTCCCCCCAACCACCTTGCTGACGATCTGAAACTGGTTGCGTTCGATGATTATAGAAATGTTCAATTAATATTTTTCTGAAATAAACTTACTCGAATATAGGAGATGATTGTCTTCTTCTTGTGGAGATAAAACACCAGGATAGACACCTTTTTCCTCCATTTCAACTAGATCAGAATGGACCGCTTTGATTCCATCACGGAAGTTGATATACGCTTCCTCGACTACGAGCACTTCTCGTTTCTGGTGTAGGAAGACACGCTTTGCAAGTTCTAAAGTTTCCGATAGAGCCATCATCTTCTTTTTTTGGTCTTCCATGGAATGGCGCACCTGAAATTGAATTTTTATATATCCGAAGTTCGGAAAAATATTTTTGTATTTTACAATTATCATTGAAGTATTTCAGCATCTATTAATCAAGTACCACACTCACTTGTACCATGGTATCAATAGCTTCATGTACTTCTTGTAGAATATGAGCGCCTTCTTCACGGTCTTTTATTCCACTTTTGCACTTCTCCTTGTAATCGAAATCTCCCTCGTTCACAAATTTCATCATGTCACTGATTACGTTTCGTGCCTGACAAATGGAAATTTTTAATACAAATCATGATCGGTAAATACTTACAGATACAAAATTTGAAATTCTCTTCAATAAATCCTCGGAATCTACCTCTAGAGCTTGATCTTCAGCTTCGTATCCTTCATCTGCATCCGATGCTAATTGGGCTTTAGAGAAACAAGGCTTATTATTACTCACCGAGAAGATTCTCCATTGCAGTTGTGCTTTGTGAAGAAAAAACACCTCGAGTTTTGAAAATTTGAATGCATCGCTTCATAACGTCTTTCACTTTATCTTGCTTTCTAGAAATTTTTAATTTGCTTTTTTCGGTCAATATGAA</canonical>
            <polymorphic>CTGAGATGATATTCCAACGAGTGCTTGCAAATGAGGTTTCATCATAGGAGCTTGTGGTCGCTCGTCATCATCCATTTCCATATCTACTTGATTACGATTGTCCCCCCAACCACCTTGCTGACGATCTGAAACTGGTTGCGTTCGATGATTATAGAAATGTTCAATTAATATTTTTCTGAAATAAACTTACTCGAATATAGGAGATGATTGTCTTCTTCTTGTGGAGATAAAACACCAGGATAGACACCTTTTTCCTCCATTTCAACTAGATCAGAATGGACCGCTTTGATTCCATCACGGAAGTTGATATACGCTTCCTCGACTACGAGCACTTCTCGTTTCTGGTGTAGGAAGACACGCTTTGCAAGTTCTAAAGTTTCCGATAGAGCCATCATCTTCTTTTTTTGGTCTTCCATGGAATGGCGCACCTGAAATTGAATTTTTATATATCCGAAGTTCGGAAAAATATTTTTGTATTTTACAATTATCATTGAAGTATKTCAGCATCTATTAATCAAGTACCACACTCACTTGTACCATGGTATCAATAGCTTCATGTACTTCTTGTAGAATATGAGCGCCTTCTTCACGGTCTTTTATTCCACTTTTGCACTTCTCCTTGTAATCGAAATCTCCCTCGTTCACAAATTTCATCATGTCACTGATTACGTTTCGTGCCTGACAAATGGAAATTTTTAATACAAATCATGATCGGTAAATACTTACAGATACAAAATTTGAAATTCTCTTCAATAAATCCTCGGAATCTACCTCTAGAGCTTGATCTTCAGCTTCGTATCCTTCATCTGCATCCGATGCTAATTGGGCTTTAGAGAAACAAGGCTTATTATTACTCACCGAGAAGATTCTCCATTGCAGTTGTGCTTTGTGAAGAAAAAACACCTCGAGTTTTGAAAATTTGAATGCATCGCTTCATAACGTCTTTCACTTTATCTTGCTTTCTAGAAATTTTTAATTTGCTTTTTTCGGTCAATATGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTCTAAAGTTTCCGATAGAGC</pcr_primer_p1>
		<pcr_primer_p2>AAGTGCAAAAGTGGAATAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGTTCTAAAGTTTCCGATAGAGCCATCATCTTCTTTTTTTGGTCTTCCATGGAATGGCGCACCTGAAATTGAATTTTTATATATCCGAAGTTCGGAAAAATATTTTTGTATTTTACAATTATCATTGAAGTATTTCAGCATCTATTAATCAAGTACCACACTCACTTGTACCATGGTATCAATAGCTTCATGTACTTCTTGTAGAATATGAGCGCCTTCTTCACGGTCTTTTATTCCACTTTTGCACTT</canonical_amplicon>
		<polymorphic_amplicon>AGTTCTAAAGTTTCCGATAGAGCCATCATCTTCTTTTTTTGGTCTTCCATGGAATGGCGCACCTGAAATTGAATTTTTATATATCCGAAGTTCGGAAAAATATTTTTGTATTTTACAATTATCATTGAAGTATKTCAGCATCTATTAATCAAGTACCACACTCACTTGTACCATGGTATCAATAGCTTCATGTACTTCTTGTAGAATATGAGCGCCTTCTTCACGGTCTTTTATTCCACTTTTGCACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7292</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>782792</contig_pos>
        <strand>+</strand>
        <context>AGAAAAAAGA[C/T]ACTCACGAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAATAGTACTGATTTAGATCAAATTATTTGGTGAAAGTTAGAAAAAAGA</left_flank>
        <right_flank>ACTCACGAACATGACTCCCTCGTCGCTTTTCCTTCTTTCTCTTTGACTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATATGTTGAGGGCTCAGTTGGGGTTCTGAAATTGGAAGAAAAATATTGCGTAATTTTGAATTCAATGAAACTCACCAGTATATTGAACTAAGTATACAGCCTTGCTCTCTCCAAATTTATTATGAGCTGTGATTCTGAACTCGTAAAGGGAGCAAGAATCGACACTCATTATCTCAACTGTGTTTCCTTTTATTCCTCGGAGTTCTCTAACTTTTGCGTCTTCATTGTGTCTGAATGCACGTTCCGTTGAAAGCAAATGTATCCCCTTTCTGTAAAGGCTTTCGACTTACTTCAACCGGTATCGAATGTTATACGTCAAATCTGGATCGGGTGAGAAAGGTGGAGCCCAGGCCAGTCTGACAGAGTACGCAGAAGTACTAACAACTTGACAATCACTTGGTGGGTCTGGTGGTAGTCGGGCGAACATGAATTTCTCATTTGGTACTGGAATAGTACTGATTTAGATCAAATTATTTGGTGAAAGTTAGAAAAAAGATACTCACGAACATGACTCCCTCGTCGCTTTTCCTTCTTTCTCTTTGACTTCTTTCGGGCCAATTCGTTATAATCTTTATGAGCGAAAATCATTCCTTTGGCCAATTGTGCCAGTAATGAGGCCATTGCTGCTCGGCGTCTCCTGGAAAAATGGGATAGGATACTGATTCAAAAGTTCCTTTTAAAGGATCTCACCTGGCTTTAGCTTCTCTCAGTAGATAGAATGGATTGTTGCTTTTCAATTTTCTACCCAAATAGTGAATTTCCTTCAAGTACATTCTTCCAACCACATCCATACACATGGTAGTGAGAATCACACCGACTAGAAACATAATTTTTCAAAAAATTATTTTTCAAGTCTTGGAAACTGACCTACGACGAAAGCCAATGTAACCCAAATATTCCCAGGAGATGGTCGGATATCTCCAAAACCTATAAAAACAACTTGATATTGATCCCTGGTTCTCCTATAGTTCTTTCCACTCACCTACGGTTAGAATAC</canonical>
            <polymorphic>AATATATGTTGAGGGCTCAGTTGGGGTTCTGAAATTGGAAGAAAAATATTGCGTAATTTTGAATTCAATGAAACTCACCAGTATATTGAACTAAGTATACAGCCTTGCTCTCTCCAAATTTATTATGAGCTGTGATTCTGAACTCGTAAAGGGAGCAAGAATCGACACTCATTATCTCAACTGTGTTTCCTTTTATTCCTCGGAGTTCTCTAACTTTTGCGTCTTCATTGTGTCTGAATGCACGTTCCGTTGAAAGCAAATGTATCCCCTTTCTGTAAAGGCTTTCGACTTACTTCAACCGGTATCGAATGTTATACGTCAAATCTGGATCGGGTGAGAAAGGTGGAGCCCAGGCCAGTCTGACAGAGTACGCAGAAGTACTAACAACTTGACAATCACTTGGTGGGTCTGGTGGTAGTCGGGCGAACATGAATTTCTCATTTGGTACTGGAATAGTACTGATTTAGATCAAATTATTTGGTGAAAGTTAGAAAAAAGAYACTCACGAACATGACTCCCTCGTCGCTTTTCCTTCTTTCTCTTTGACTTCTTTCGGGCCAATTCGTTATAATCTTTATGAGCGAAAATCATTCCTTTGGCCAATTGTGCCAGTAATGAGGCCATTGCTGCTCGGCGTCTCCTGGAAAAATGGGATAGGATACTGATTCAAAAGTTCCTTTTAAAGGATCTCACCTGGCTTTAGCTTCTCTCAGTAGATAGAATGGATTGTTGCTTTTCAATTTTCTACCCAAATAGTGAATTTCCTTCAAGTACATTCTTCCAACCACATCCATACACATGGTAGTGAGAATCACACCGACTAGAAACATAATTTTTCAAAAAATTATTTTTCAAGTCTTGGAAACTGACCTACGACGAAAGCCAATGTAACCCAAATATTCCCAGGAGATGGTCGGATATCTCCAAAACCTATAAAAACAACTTGATATTGATCCCTGGTTCTCCTATAGTTCTTTCCACTCACCTACGGTTAGAATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCATTTGGTACTGGAATAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGAACTTTTGAATCAGTATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCATTTGGTACTGGAATAGTACTGATTTAGATCAAATTATTTGGTGAAAGTTAGAAAAAAGATACTCACGAACATGACTCCCTCGTCGCTTTTCCTTCTTTCTCTTTGACTTCTTTCGGGCCAATTCGTTATAATCTTTATGAGCGAAAATCATTCCTTTGGCCAATTGTGCCAGTAATGAGGCCATTGCTGCTCGGCGTCTCCTGGAAAAATGGGATAGGATACTGATTCAAAAGTTCCTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCATTTGGTACTGGAATAGTACTGATTTAGATCAAATTATTTGGTGAAAGTTAGAAAAAAGAYACTCACGAACATGACTCCCTCGTCGCTTTTCCTTCTTTCTCTTTGACTTCTTTCGGGCCAATTCGTTATAATCTTTATGAGCGAAAATCATTCCTTTGGCCAATTGTGCCAGTAATGAGGCCATTGCTGCTCGGCGTCTCCTGGAAAAATGGGATAGGATACTGATTCAAAAGTTCCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7293</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>810550</contig_pos>
        <strand>+</strand>
        <context>ATCCAAATGG[A/G]GTCAACGGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGTCTTTGATTCGGTGATAGGATGCTTGGCAGAAAACACATCCAAATGG</left_flank>
        <right_flank>GTCAACGGGTTGAAAACTTGTGGCGATTCCATGTTATCCGACTTATCTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACAGTTTTTGAAGACAAATTTTTTTGAACCGTATAACTTTATTCAAGAAATAGTACATCAATAACCGGGATTATCTTTTTTCTTTTTCGAAACTCAAAAAAAATTATCAAATTTGTAAAACGTTTATTGAAGCGTTAAATTACCAGAGGAAATTTTTCTAGGGATCCAGTTATCACAAGTATTGATTTCAAATAGGTCAAGCACATAATAACAAACAAAAAGAAACTACACGAATATATATGATTTGAACATTATCAAATATGTCAGAATCCCCAAAAATATCATTGCACCACACTATCATTGATTATTCATAACTTCCTGTTTTCCTAGTGTCTCGATGACGTGGCAGGTGGAATAATGGTGTTCAAGATGTTGAGGTTGCACAAACTGGGCTAAACAGCAGTTACAGCGATAACGAGTACTGTGGACGCGGTTCAAATGGATCGTGAGGTCTTTGATTCGGTGATAGGATGCTTGGCAGAAAACACATCCAAATGGGGTCAACGGGTTGAAAACTTGTGGCGATTCCATGTTATCCGACTTATCTGAAACATCCAAATAGTTGAAATGGGACACTCTAATACCCTATACTGTATGGCTATACTCGCCCTTTGAGCTCAATTATCTCAATTTTTATGAAAGATATGAAAAATGTTCTGAGCGATAAAGTGTTGGTGATATTATGACAAGCATTTTATCAGTTAACAGATTTTGATATTTTTCATAGAAATTGAGCTCAAAGTGCGAGCATAGGGTAGCCTTATATTAGAGTCTTTACAGTAATTTTAAGTTTCTTACATATGGGAGTAGGTTCTCTAGATCCTTTTGTAGAAGTCGAAATGTCTACTGCACTTGCTGATGAGCTGGATTCTTCATTAGCCTCCGAGAACTCTCCATTTTGTTCGGCTAATTTATTGACTAAAAATATATGGGTGTATTCGTGATAACTAGGCCAGATCTTACTGTCATTGAGAAATATGTGAAGTGGATTATCGAACA</canonical>
            <polymorphic>TACAGTTTTTGAAGACAAATTTTTTTGAACCGTATAACTTTATTCAAGAAATAGTACATCAATAACCGGGATTATCTTTTTTCTTTTTCGAAACTCAAAAAAAATTATCAAATTTGTAAAACGTTTATTGAAGCGTTAAATTACCAGAGGAAATTTTTCTAGGGATCCAGTTATCACAAGTATTGATTTCAAATAGGTCAAGCACATAATAACAAACAAAAAGAAACTACACGAATATATATGATTTGAACATTATCAAATATGTCAGAATCCCCAAAAATATCATTGCACCACACTATCATTGATTATTCATAACTTCCTGTTTTCCTAGTGTCTCGATGACGTGGCAGGTGGAATAATGGTGTTCAAGATGTTGAGGTTGCACAAACTGGGCTAAACAGCAGTTACAGCGATAACGAGTACTGTGGACGCGGTTCAAATGGATCGTGAGGTCTTTGATTCGGTGATAGGATGCTTGGCAGAAAACACATCCAAATGGRGTCAACGGGTTGAAAACTTGTGGCGATTCCATGTTATCCGACTTATCTGAAACATCCAAATAGTTGAAATGGGACACTCTAATACCCTATACTGTATGGCTATACTCGCCCTTTGAGCTCAATTATCTCAATTTTTATGAAAGATATGAAAAATGTTCTGAGCGATAAAGTGTTGGTGATATTATGACAAGCATTTTATCAGTTAACAGATTTTGATATTTTTCATAGAAATTGAGCTCAAAGTGCGAGCATAGGGTAGCCTTATATTAGAGTCTTTACAGTAATTTTAAGTTTCTTACATATGGGAGTAGGTTCTCTAGATCCTTTTGTAGAAGTCGAAATGTCTACTGCACTTGCTGATGAGCTGGATTCTTCATTAGCCTCCGAGAACTCTCCATTTTGTTCGGCTAATTTATTGACTAAAAATATATGGGTGTATTCGTGATAACTAGGCCAGATCTTACTGTCATTGAGAAATATGTGAAGTGGATTATCGAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATAACTTCCTGTTTTCCTAGTG</pcr_primer_p1>
		<pcr_primer_p2>GATGTTTCAGATAAGTCGGATAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CATAACTTCCTGTTTTCCTAGTGTCTCGATGACGTGGCAGGTGGAATAATGGTGTTCAAGATGTTGAGGTTGCACAAACTGGGCTAAACAGCAGTTACAGCGATAACGAGTACTGTGGACGCGGTTCAAATGGATCGTGAGGTCTTTGATTCGGTGATAGGATGCTTGGCAGAAAACACATCCAAATGGGGTCAACGGGTTGAAAACTTGTGGCGATTCCATGTTATCCGACTTATCTGAAACATC</canonical_amplicon>
		<polymorphic_amplicon>CATAACTTCCTGTTTTCCTAGTGTCTCGATGACGTGGCAGGTGGAATAATGGTGTTCAAGATGTTGAGGTTGCACAAACTGGGCTAAACAGCAGTTACAGCGATAACGAGTACTGTGGACGCGGTTCAAATGGATCGTGAGGTCTTTGATTCGGTGATAGGATGCTTGGCAGAAAACACATCCAAATGGRGTCAACGGGTTGAAAACTTGTGGCGATTCCATGTTATCCGACTTATCTGAAACATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7294</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>811949</contig_pos>
        <strand>+</strand>
        <context>ACAGCCATCA[A/T]TTTTTGACTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTGGAACATTTGAAAGACAGTTCAGAAAATCGAGAATTGACAGCCATCA</left_flank>
        <right_flank>TTTTTGACTGAATGCTCAAAAATTATTTTTGCTAAAGTGGGCTAGCCCAT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGCCACCCATTTGAAAAAGAGAATCCGGATGTTTGCACCGAAGATGACGGATAAAACCACTAGATCCATTGTCAATTTTGTAGACTTTCACACAAAATCGACATCGAATCATGTTCTTTTGATCAGTTGGAAGAGAGTAGAGATTGATATGTGACATTTCTAAATTGAAAAGAAAGTTTAGAATCGGAAAAAGAAGCGGAGACGAATGGAAAAATAAAACAGATGGATCATAAAAAACGGAGAAAAAAACAGGTGATAACTGAATTATTACTTTGGAATTCGTAGGAATATTTTTGAAGTGTTTGGAGTCAACGAATGAAGAGAAAGTGTGGAATTTCGAATAGATAACTAACGTCATTCTATCAAGACATAAAGTACATTGTCGCTAATTGAAGCCTTGTAACATAAGAATTATCTATTTTTGGGGTGAATTTATGAACATTACTAATTGGAACATTTGAAAGACAGTTCAGAAAATCGAGAATTGACAGCCATCATTTTTTGACTGAATGCTCAAAAATTATTTTTGCTAAAGTGGGCTAGCCCATCTTAAAAATTGCCGGAGTATCTGTGAATCCGAGTAAATGAAAACATTTTTAGGTTACGGTAGTTTTCTTTGTGGGACTTTCAGCCACGGCCACCAGCGTTTCTCGTCCACAGCTCCGATTTTTCAAACAATCAAAATACCAAAAGACGTTTTCCCCTTTTCTGAAAGTCCAGAAATAAGAGATCACATGAGACTGAATGTGAATATGGTTTATCAAAAAGTACAGAGGACAGAATGATCGGATGGTTTTCTCTGTGTCTCCATTCAATCCATTGAGACTCACTTTATGATAATCATGGGAATCGCATCAAATGGATAGAGAAGAGAAGAAGACAGCACACAAAAGGATTGAATGAATTGAATAATCAAATGTGTGATATTTGGTGAATAGATAAGAGGAAGAAATAACATTGAGCATACTGTAGGATATATGGATCTACATATGATGGGA</canonical>
            <polymorphic>AGAGCCACCCATTTGAAAAAGAGAATCCGGATGTTTGCACCGAAGATGACGGATAAAACCACTAGATCCATTGTCAATTTTGTAGACTTTCACACAAAATCGACATCGAATCATGTTCTTTTGATCAGTTGGAAGAGAGTAGAGATTGATATGTGACATTTCTAAATTGAAAAGAAAGTTTAGAATCGGAAAAAGAAGCGGAGACGAATGGAAAAATAAAACAGATGGATCATAAAAAACGGAGAAAAAAACAGGTGATAACTGAATTATTACTTTGGAATTCGTAGGAATATTTTTGAAGTGTTTGGAGTCAACGAATGAAGAGAAAGTGTGGAATTTCGAATAGATAACTAACGTCATTCTATCAAGACATAAAGTACATTGTCGCTAATTGAAGCCTTGTAACATAAGAATTATCTATTTTTGGGGTGAATTTATGAACATTACTAATTGGAACATTTGAAAGACAGTTCAGAAAATCGAGAATTGACAGCCATCAWTTTTTGACTGAATGCTCAAAAATTATTTTTGCTAAAGTGGGCTAGCCCATCTTAAAAATTGCCGGAGTATCTGTGAATCCGAGTAAATGAAAACATTTTTAGGTTACGGTAGTTTTCTTTGTGGGACTTTCAGCCACGGCCACCAGCGTTTCTCGTCCACAGCTCCGATTTTTCAAACAATCAAAATACCAAAAGACGTTTTCCCCTTTTCTGAAAGTCCAGAAATAAGAGATCACATGAGACTGAATGTGAATATGGTTTATCAAAAAGTACAGAGGACAGAATGATCGGATGGTTTTCTCTGTGTCTCCATTCAATCCATTGAGACTCACTTTATGATAATCATGGGAATCGCATCAAATGGATAGAGAAGAGAAGAAGACAGCACACAAAAGGATTGAATGAATTGAATAATCAAATGTGTGATATTTGGTGAATAGATAAGAGGAAGAAATAACATTGAGCATACTGTAGGATATATGGATCTACATATGATGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATTGGAACATTTGAAAGACAG</pcr_primer_p1>
		<pcr_primer_p2>CTTTCAGAAAAGGGGAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>270</pcr_amplicon_size>
		<canonical_amplicon>TAATTGGAACATTTGAAAGACAGTTCAGAAAATCGAGAATTGACAGCCATCATTTTTTGACTGAATGCTCAAAAATTATTTTTGCTAAAGTGGGCTAGCCCATCTTAAAAATTGCCGGAGTATCTGTGAATCCGAGTAAATGAAAACATTTTTAGGTTACGGTAGTTTTCTTTGTGGGACTTTCAGCCACGGCCACCAGCGTTTCTCGTCCACAGCTCCGATTTTTCAAACAATCAAAATACCAAAAGACGTTTTCCCCTTTTCTGAAAG</canonical_amplicon>
		<polymorphic_amplicon>TAATTGGAACATTTGAAAGACAGTTCAGAAAATCGAGAATTGACAGCCATCAWTTTTTGACTGAATGCTCAAAAATTATTTTTGCTAAAGTGGGCTAGCCCATCTTAAAAATTGCCGGAGTATCTGTGAATCCGAGTAAATGAAAACATTTTTAGGTTACGGTAGTTTTCTTTGTGGGACTTTCAGCCACGGCCACCAGCGTTTCTCGTCCACAGCTCCGATTTTTCAAACAATCAAAATACCAAAAGACGTTTTCCCCTTTTCTGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7295</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>812354</contig_pos>
        <strand>+</strand>
        <context>GGATTGAATG[A/G]ATTGAATAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATCAAATGGATAGAGAAGAGAAGAAGACAGCACACAAAAGGATTGAATG</left_flank>
        <right_flank>ATTGAATAATCAAATGTGTGATATTTGGTGAATAGATAAGAGGAAGAAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATAAGAATTATCTATTTTTGGGGTGAATTTATGAACATTACTAATTGGAACATTTGAAAGACAGTTCAGAAAATCGAGAATTGACAGCCATCATTTTTTGACTGAATGCTCAAAAATTATTTTTGCTAAAGTGGGCTAGCCCATCTTAAAAATTGCCGGAGTATCTGTGAATCCGAGTAAATGAAAACATTTTTAGGTTACGGTAGTTTTCTTTGTGGGACTTTCAGCCACGGCCACCAGCGTTTCTCGTCCACAGCTCCGATTTTTCAAACAATCAAAATACCAAAAGACGTTTTCCCCTTTTCTGAAAGTCCAGAAATAAGAGATCACATGAGACTGAATGTGAATATGGTTTATCAAAAAGTACAGAGGACAGAATGATCGGATGGTTTTCTCTGTGTCTCCATTCAATCCATTGAGACTCACTTTATGATAATCATGGGAATCGCATCAAATGGATAGAGAAGAGAAGAAGACAGCACACAAAAGGATTGAATGAATTGAATAATCAAATGTGTGATATTTGGTGAATAGATAAGAGGAAGAAATAACATTGAGCATACTGTAGGATATATGGATCTACATATGATGGGATTATTCATAAGAATCAAATGTCTTGCCTTTAAAAATGTCAAAAAGTTACAGAATACCGTATTTACTCTATTAGAAGCCCACTCAAACTCCTAGCTCAAATTTCTCGATTCCTGTGAAAGATATCAATTTTTGTCATCTGATAAACTTTTTATCACTATATTCCAAATAATTTAACAGTTGACAGATTTTTGATATCTTTCACAGGAATCGAGATAACTGATCTCAAATTTGATCGCATTACTTTTTTGAAGAAAAAAGAGATCCTAGTTTTCTCTGTCCCTTAAAAGTATTCTATTCTCATTCAAATTAACCGCAAGCGTTCGAAAACAATAAACTGGGCTTATTCTGAGAAAGAGCAAAAAAAGCGAATAATGAGTCCTATGTAAACGAGAAAAACTGCGAAAA</canonical>
            <polymorphic>CATAAGAATTATCTATTTTTGGGGTGAATTTATGAACATTACTAATTGGAACATTTGAAAGACAGTTCAGAAAATCGAGAATTGACAGCCATCATTTTTTGACTGAATGCTCAAAAATTATTTTTGCTAAAGTGGGCTAGCCCATCTTAAAAATTGCCGGAGTATCTGTGAATCCGAGTAAATGAAAACATTTTTAGGTTACGGTAGTTTTCTTTGTGGGACTTTCAGCCACGGCCACCAGCGTTTCTCGTCCACAGCTCCGATTTTTCAAACAATCAAAATACCAAAAGACGTTTTCCCCTTTTCTGAAAGTCCAGAAATAAGAGATCACATGAGACTGAATGTGAATATGGTTTATCAAAAAGTACAGAGGACAGAATGATCGGATGGTTTTCTCTGTGTCTCCATTCAATCCATTGAGACTCACTTTATGATAATCATGGGAATCGCATCAAATGGATAGAGAAGAGAAGAAGACAGCACACAAAAGGATTGAATGRATTGAATAATCAAATGTGTGATATTTGGTGAATAGATAAGAGGAAGAAATAACATTGAGCATACTGTAGGATATATGGATCTACATATGATGGGATTATTCATAAGAATCAAATGTCTTGCCTTTAAAAATGTCAAAAAGTTACAGAATACCGTATTTACTCTATTAGAAGCCCACTCAAACTCCTAGCTCAAATTTCTCGATTCCTGTGAAAGATATCAATTTTTGTCATCTGATAAACTTTTTATCACTATATTCCAAATAATTTAACAGTTGACAGATTTTTGATATCTTTCACAGGAATCGAGATAACTGATCTCAAATTTGATCGCATTACTTTTTTGAAGAAAAAAGAGATCCTAGTTTTCTCTGTCCCTTAAAAGTATTCTATTCTCATTCAAATTAACCGCAAGCGTTCGAAAACAATAAACTGGGCTTATTCTGAGAAAGAGCAAAAAAAGCGAATAATGAGTCCTATGTAAACGAGAAAAACTGCGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>348 193 101 79 58 43 36 36 36 27 20 17 6</canonical_bands>
                <polymorphic_bands>541 101 79 58 43 36 36 36 27 20 17 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGTTTATCAAAAAGTACAGAGG</pcr_primer_p1>
		<pcr_primer_p2>AATAATCCCATCATATGTAGATCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGTTTATCAAAAAGTACAGAGGACAGAATGATCGGATGGTTTTCTCTGTGTCTCCATTCAATCCATTGAGACTCACTTTATGATAATCATGGGAATCGCATCAAATGGATAGAGAAGAGAAGAAGACAGCACACAAAAGGATTGAATGAATTGAATAATCAAATGTGTGATATTTGGTGAATAGATAAGAGGAAGAAATAACATTGAGCATACTGTAGGATATATGGATCTACATATGATGGGATTATT</canonical_amplicon>
		<polymorphic_amplicon>TGGTTTATCAAAAAGTACAGAGGACAGAATGATCGGATGGTTTTCTCTGTGTCTCCATTCAATCCATTGAGACTCACTTTATGATAATCATGGGAATCGCATCAAATGGATAGAGAAGAGAAGAAGACAGCACACAAAAGGATTGAATGRATTGAATAATCAAATGTGTGATATTTGGTGAATAGATAAGAGGAAGAAATAACATTGAGCATACTGTAGGATATATGGATCTACATATGATGGGATTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7296</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>846882</contig_pos>
        <strand>+</strand>
        <context>CTGGCTCCTT[C/T]GCCAACATAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGAGGTTCGATTTCTGGCAGTTGGCAGCTCTGGTGATGGCTGGCTCCTT</left_flank>
        <right_flank>GCCAACATACATTGTCTCAATGCTGGATAGTTGGCTCCCATGGCTGCTAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGATTGCGGACTCCAGTTCCAGCCACACAGTTACACAATTGACGGACTCCAGCAGTGTCGAATCCGGAGTTGATGGCACATTGTTTGGTGGATTGGACAAGAACGCTATCTGGTGGGAGGTCGAGTCCGCATCCGAGTTTCTTATAGCAGTGTCCAGTTGATCCACGATCCATACACTTCATAACACAAGTGGCAAACTTCTTTCCGACTGAGAGGAAAGCCTTTGCTTCGGCTTGGATTCCTAGAAAAATAATTGAAATCATAGGGATTCTAGACTGTAAAACTTACCAGATCTCTGCAGGATCGAGTTAACTTCAGTGAATGCAGCAAGTTTGAGTGTCTCTGGGTAACGTTTGCGAACCATACCACCTCCTGATCGAGAGCATCTGAAAAAAATTTGGAAATAGTTGACTATTGTTACTATGCTTTTTAGGTTACTTACGCATTCTGGAGGTTCGATTTCTGGCAGTTGGCAGCTCTGGTGATGGCTGGCTCCTTCGCCAACATACATTGTCTCAATGCTGGATAGTTGGCTCCCATGGCTGCTACGTGGTTTTGACACTGATCAGCGCACTTCATGAATCCTCCAGTGGCTGTTCCCAAGCATCCTTGAATCTCTCCACATCCGCACTGGCGGATCATTTGGGACGTGGCAAGAGGGACCAGAGATAGAAATATGAGTAACGAAGTATGCATTCTGAACAAAACACTAATTGAATATACTTTTTAATCTATCATAAAAAAATAATGCAAATGATGTTTAGATCTTAACACCTAAACTATTGAAATGTAGGAAACGAGAGAACATGCAATCTCTTAGAAAACCAAAACATTTATACTCGCCATCTTCTCTGCTCCTCCTTGTCCCTGACTCCGCCCATTTTTCATCTTCTAACCAGTATCTCCGTGTGTACAATTTCTCTGATTCTCTCTAAAATTACTAAAAAAGATGTTCTCTCTTTACGGAATCACGACGTCTTCTTCTTCTTTTTCCTTCAA</canonical>
            <polymorphic>GAGATTGCGGACTCCAGTTCCAGCCACACAGTTACACAATTGACGGACTCCAGCAGTGTCGAATCCGGAGTTGATGGCACATTGTTTGGTGGATTGGACAAGAACGCTATCTGGTGGGAGGTCGAGTCCGCATCCGAGTTTCTTATAGCAGTGTCCAGTTGATCCACGATCCATACACTTCATAACACAAGTGGCAAACTTCTTTCCGACTGAGAGGAAAGCCTTTGCTTCGGCTTGGATTCCTAGAAAAATAATTGAAATCATAGGGATTCTAGACTGTAAAACTTACCAGATCTCTGCAGGATCGAGTTAACTTCAGTGAATGCAGCAAGTTTGAGTGTCTCTGGGTAACGTTTGCGAACCATACCACCTCCTGATCGAGAGCATCTGAAAAAAATTTGGAAATAGTTGACTATTGTTACTATGCTTTTTAGGTTACTTACGCATTCTGGAGGTTCGATTTCTGGCAGTTGGCAGCTCTGGTGATGGCTGGCTCCTTYGCCAACATACATTGTCTCAATGCTGGATAGTTGGCTCCCATGGCTGCTACGTGGTTTTGACACTGATCAGCGCACTTCATGAATCCTCCAGTGGCTGTTCCCAAGCATCCTTGAATCTCTCCACATCCGCACTGGCGGATCATTTGGGACGTGGCAAGAGGGACCAGAGATAGAAATATGAGTAACGAAGTATGCATTCTGAACAAAACACTAATTGAATATACTTTTTAATCTATCATAAAAAAATAATGCAAATGATGTTTAGATCTTAACACCTAAACTATTGAAATGTAGGAAACGAGAGAACATGCAATCTCTTAGAAAACCAAAACATTTATACTCGCCATCTTCTCTGCTCCTCCTTGTCCCTGACTCCGCCCATTTTTCATCTTCTAACCAGTATCTCCGTGTGTACAATTTCTCTGATTCTCTCTAAAATTACTAAAAAAGATGTTCTCTCTTTACGGAATCACGACGTCTTCTTCTTCTTTTTCCTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTAGGTTACTTACGCATTCTG</pcr_primer_p1>
		<pcr_primer_p2>TATTTCTATCTCTGGTCCCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTAGGTTACTTACGCATTCTGGAGGTTCGATTTCTGGCAGTTGGCAGCTCTGGTGATGGCTGGCTCCTTCGCCAACATACATTGTCTCAATGCTGGATAGTTGGCTCCCATGGCTGCTACGTGGTTTTGACACTGATCAGCGCACTTCATGAATCCTCCAGTGGCTGTTCCCAAGCATCCTTGAATCTCTCCACATCCGCACTGGCGGATCATTTGGGACGTGGCAAGAGGGACCAGAGATAGAAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTTAGGTTACTTACGCATTCTGGAGGTTCGATTTCTGGCAGTTGGCAGCTCTGGTGATGGCTGGCTCCTTYGCCAACATACATTGTCTCAATGCTGGATAGTTGGCTCCCATGGCTGCTACGTGGTTTTGACACTGATCAGCGCACTTCATGAATCCTCCAGTGGCTGTTCCCAAGCATCCTTGAATCTCTCCACATCCGCACTGGCGGATCATTTGGGACGTGGCAAGAGGGACCAGAGATAGAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7297</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>846794</contig_pos>
        <strand>+</strand>
        <context>GAAATAGTTG[A/C]CTATTGTTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCATACCACCTCCTGATCGAGAGCATCTGAAAAAAATTTGGAAATAGTTG</left_flank>
        <right_flank>CTATTGTTACTATGCTTTTTAGGTTACTTACGCATTCTGGAGGTTCGATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTTATCATGGTACCATAATGTACAATTATTCCAAGAAGAGGTTGTAAAAAGAATTAAGAGATCGTGATGCGATTGCACAATGGAGCGAGATTGCGGACTCCAGTTCCAGCCACACAGTTACACAATTGACGGACTCCAGCAGTGTCGAATCCGGAGTTGATGGCACATTGTTTGGTGGATTGGACAAGAACGCTATCTGGTGGGAGGTCGAGTCCGCATCCGAGTTTCTTATAGCAGTGTCCAGTTGATCCACGATCCATACACTTCATAACACAAGTGGCAAACTTCTTTCCGACTGAGAGGAAAGCCTTTGCTTCGGCTTGGATTCCTAGAAAAATAATTGAAATCATAGGGATTCTAGACTGTAAAACTTACCAGATCTCTGCAGGATCGAGTTAACTTCAGTGAATGCAGCAAGTTTGAGTGTCTCTGGGTAACGTTTGCGAACCATACCACCTCCTGATCGAGAGCATCTGAAAAAAATTTGGAAATAGTTGACTATTGTTACTATGCTTTTTAGGTTACTTACGCATTCTGGAGGTTCGATTTCTGGCAGTTGGCAGCTCTGGTGATGGCTGGCTCCTTCGCCAACATACATTGTCTCAATGCTGGATAGTTGGCTCCCATGGCTGCTACGTGGTTTTGACACTGATCAGCGCACTTCATGAATCCTCCAGTGGCTGTTCCCAAGCATCCTTGAATCTCTCCACATCCGCACTGGCGGATCATTTGGGACGTGGCAAGAGGGACCAGAGATAGAAATATGAGTAACGAAGTATGCATTCTGAACAAAACACTAATTGAATATACTTTTTAATCTATCATAAAAAAATAATGCAAATGATGTTTAGATCTTAACACCTAAACTATTGAAATGTAGGAAACGAGAGAACATGCAATCTCTTAGAAAACCAAAACATTTATACTCGCCATCTTCTCTGCTCCTCCTTGTCCCTGACTCCGCCCATTTTTCATCTTCTAACCAGTATCTCCGTGTG</canonical>
            <polymorphic>ATCTTATCATGGTACCATAATGTACAATTATTCCAAGAAGAGGTTGTAAAAAGAATTAAGAGATCGTGATGCGATTGCACAATGGAGCGAGATTGCGGACTCCAGTTCCAGCCACACAGTTACACAATTGACGGACTCCAGCAGTGTCGAATCCGGAGTTGATGGCACATTGTTTGGTGGATTGGACAAGAACGCTATCTGGTGGGAGGTCGAGTCCGCATCCGAGTTTCTTATAGCAGTGTCCAGTTGATCCACGATCCATACACTTCATAACACAAGTGGCAAACTTCTTTCCGACTGAGAGGAAAGCCTTTGCTTCGGCTTGGATTCCTAGAAAAATAATTGAAATCATAGGGATTCTAGACTGTAAAACTTACCAGATCTCTGCAGGATCGAGTTAACTTCAGTGAATGCAGCAAGTTTGAGTGTCTCTGGGTAACGTTTGCGAACCATACCACCTCCTGATCGAGAGCATCTGAAAAAAATTTGGAAATAGTTGMCTATTGTTACTATGCTTTTTAGGTTACTTACGCATTCTGGAGGTTCGATTTCTGGCAGTTGGCAGCTCTGGTGATGGCTGGCTCCTTCGCCAACATACATTGTCTCAATGCTGGATAGTTGGCTCCCATGGCTGCTACGTGGTTTTGACACTGATCAGCGCACTTCATGAATCCTCCAGTGGCTGTTCCCAAGCATCCTTGAATCTCTCCACATCCGCACTGGCGGATCATTTGGGACGTGGCAAGAGGGACCAGAGATAGAAATATGAGTAACGAAGTATGCATTCTGAACAAAACACTAATTGAATATACTTTTTAATCTATCATAAAAAAATAATGCAAATGATGTTTAGATCTTAACACCTAAACTATTGAAATGTAGGAAACGAGAGAACATGCAATCTCTTAGAAAACCAAAACATTTATACTCGCCATCTTCTCTGCTCCTCCTTGTCCCTGACTCCGCCCATTTTTCATCTTCTAACCAGTATCTCCGTGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>502 399 99</canonical_bands>
                <polymorphic_bands>601 399</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 399 99</canonical_bands>
                <polymorphic_bands>601 399</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTTGAGTGTCTCTGGGTAA</pcr_primer_p1>
		<pcr_primer_p2>GATCAGTGTCAAAACCACGTA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AAGTTTGAGTGTCTCTGGGTAACGTTTGCGAACCATACCACCTCCTGATCGAGAGCATCTGAAAAAAATTTGGAAATAGTTGACTATTGTTACTATGCTTTTTAGGTTACTTACGCATTCTGGAGGTTCGATTTCTGGCAGTTGGCAGCTCTGGTGATGGCTGGCTCCTTCGCCAACATACATTGTCTCAATGCTGGATAGTTGGCTCCCATGGCTGCTACGTGGTTTTGACACTGATC</canonical_amplicon>
		<polymorphic_amplicon>AAGTTTGAGTGTCTCTGGGTAACGTTTGCGAACCATACCACCTCCTGATCGAGAGCATCTGAAAAAAATTTGGAAATAGTTGMCTATTGTTACTATGCTTTTTAGGTTACTTACGCATTCTGGAGGTTCGATTTCTGGCAGTTGGCAGCTCTGGTGATGGCTGGCTCCTTCGCCAACATACATTGTCTCAATGCTGGATAGTTGGCTCCCATGGCTGCTACGTGGTTTTGACACTGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7298</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>871542</contig_pos>
        <strand>+</strand>
        <context>AACAATTTTT[C/T]GCAGAAGAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTACGATCCAAGGGAAAGCATAATAAAATTGGTGGAAAAACAATTTTT</left_flank>
        <right_flank>GCAGAAGAAGATGGAAAGAAGAAGAATAATAGGAAAGTGTACAGAAGATG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTGATCTCTTGAATATTCTTGGCCGCTTTCTTCTCATTGTAAACAACTCCTTTGTTAGGCACAACAATCAAGTTGAGGCCATCCACTGTAGCAATGACTGGCTCATTGTAAAGATTCTTCCATGGAATTTTGAGAACCAGAGAGGAGAGATAGCCGTACTTGAGCTTTATTGGCAAATCAAAATCATCTAGAGCCGTTTCCTTGACTTGCAAATTGTCGAGTTTCACATCTCCTGAAAATTATATGATTGGGAAACTTCCTGATACCGTTGTCCATGAGAAGAAGACTTACCTCCCCAAATTCCGATATTAAGTTGTGAAGAGTCCAAATTATCGACAAAGTCGCCAAGGAACCTGTTGAGCAGGTCGGCGACCAGCGATTCAAAAACCATCCTGTAAGATTAACCGTTGCAGATAAGCATAGAGAAAAATTGAACAGAAAATGTTATTTTACGATCCAAGGGAAAGCATAATAAAATTGGTGGAAAAACAATTTTTCGCAGAAGAAGATGGAAAGAAGAAGAATAATAGGAAAGTGTACAGAAGATGATGCGTAAACAAAACCGAGAGTTAGATATAACACTGTGTTTAGAAAAGGAAGAAGGCGGCAGAAATTAAAAAAAATATTGGTGATGGTTTTGTTTGCTCCCACAATAGGAATAGCGGAGGAGGTGAGTTATAGACAAAATGGAAAGTTATACTACTTTTTGACATGGAATTAGGGTAATTTTTAATTTCAGATGGCTGCGGAAAATATGACTAACGGTACTACGCGGAGCTGCGGCGCAGGTCCATAAAAATTATATATTATTTATTCTCGTTAGTGCAGGTATAAAACGCTGGAAAATGGTTTCTACTAACACCTTGTATCATAGAAAAACTCCTTATCGAAGCATTTCGTTGATATTTTGTACTTCTTTCAAAGGAGGTCATTGAACTCAACAATTAAACTGACGTGGTTTCTAAATAAGCAGGGATGCTCGGAACGGAATTTTTCCG</canonical>
            <polymorphic>GCTTGATCTCTTGAATATTCTTGGCCGCTTTCTTCTCATTGTAAACAACTCCTTTGTTAGGCACAACAATCAAGTTGAGGCCATCCACTGTAGCAATGACTGGCTCATTGTAAAGATTCTTCCATGGAATTTTGAGAACCAGAGAGGAGAGATAGCCGTACTTGAGCTTTATTGGCAAATCAAAATCATCTAGAGCCGTTTCCTTGACTTGCAAATTGTCGAGTTTCACATCTCCTGAAAATTATATGATTGGGAAACTTCCTGATACCGTTGTCCATGAGAAGAAGACTTACCTCCCCAAATTCCGATATTAAGTTGTGAAGAGTCCAAATTATCGACAAAGTCGCCAAGGAACCTGTTGAGCAGGTCGGCGACCAGCGATTCAAAAACCATCCTGTAAGATTAACCGTTGCAGATAAGCATAGAGAAAAATTGAACAGAAAATGTTATTTTACGATCCAAGGGAAAGCATAATAAAATTGGTGGAAAAACAATTTTTYGCAGAAGAAGATGGAAAGAAGAAGAATAATAGGAAAGTGTACAGAAGATGATGCGTAAACAAAACCGAGAGTTAGATATAACACTGTGTTTAGAAAAGGAAGAAGGCGGCAGAAATTAAAAAAAATATTGGTGATGGTTTTGTTTGCTCCCACAATAGGAATAGCGGAGGAGGTGAGTTATAGACAAAATGGAAAGTTATACTACTTTTTGACATGGAATTAGGGTAATTTTTAATTTCAGATGGCTGCGGAAAATATGACTAACGGTACTACGCGGAGCTGCGGCGCAGGTCCATAAAAATTATATATTATTTATTCTCGTTAGTGCAGGTATAAAACGCTGGAAAATGGTTTCTACTAACACCTTGTATCATAGAAAAACTCCTTATCGAAGCATTTCGTTGATATTTTGTACTTCTTTCAAAGGAGGTCATTGAACTCAACAATTAAACTGACGTGGTTTCTAAATAAGCAGGGATGCTCGGAACGGAATTTTTCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAAAATGTTATTTTACGATCC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTCTATAACTCACCTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAGAAAATGTTATTTTACGATCCAAGGGAAAGCATAATAAAATTGGTGGAAAAACAATTTTTCGCAGAAGAAGATGGAAAGAAGAAGAATAATAGGAAAGTGTACAGAAGATGATGCGTAAACAAAACCGAGAGTTAGATATAACACTGTGTTTAGAAAAGGAAGAAGGCGGCAGAAATTAAAAAAAATATTGGTGATGGTTTTGTTTGCTCCCACAATAGGAATAGCGGAGGAGGTGAGTTATAGACAAAA</canonical_amplicon>
		<polymorphic_amplicon>CAGAAAATGTTATTTTACGATCCAAGGGAAAGCATAATAAAATTGGTGGAAAAACAATTTTTYGCAGAAGAAGATGGAAAGAAGAAGAATAATAGGAAAGTGTACAGAAGATGATGCGTAAACAAAACCGAGAGTTAGATATAACACTGTGTTTAGAAAAGGAAGAAGGCGGCAGAAATTAAAAAAAATATTGGTGATGGTTTTGTTTGCTCCCACAATAGGAATAGCGGAGGAGGTGAGTTATAGACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7299</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>871679</contig_pos>
        <strand></strand>
        <context>ATTGGTGATG[G/C]TTTTGTTTGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TGTTTAGAAAAGGAAGAAGGCGGCAGAAATTAAAAAAAATATTGGTGATG</left_flank>
        <right_flank>TTTTGTTTGCTCCCACAATAGGAATAGCGGAGGAGGTGAGTTATAGACAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAGAGAGGAGAGATAGCCGTACTTGAGCTTTATTGGCAAATCAAAATCATCTAGAGCCGTTTCCTTGACTTGCAAATTGTCGAGTTTCACATCTCCTGAAAATTATATGATTGGGAAACTTCCTGATACCGTTGTCCATGAGAAGAAGACTTACCTCCCCAAATTCCGATATTAAGTTGTGAAGAGTCCAAATTATCGACAAAGTCGCCAAGGAACCTGTTGAGCAGGTCGGCGACCAGCGATTCAAAAACCATCCTGTAAGATTAACCGTTGCAGATAAGCATAGAGAAAAATTGAACAGAAAATGTTATTTTACGATCCAAGGGAAAGCATAATAAAATTGGTGGAAAAACAATTTTTCGCAGAAGAAGATGGAAAGAAGAAGAATAATAGGAAAGTGTACAGAAGATGATGCGTAAACAAAACCGAGAGTTAGATATAACACTGTGTTTAGAAAAGGAAGAAGGCGGCAGAAATTAAAAAAAATATTGGTGATGGTTTTGTTTGCTCCCACAATAGGAATAGCGGAGGAGGTGAGTTATAGACAAAATGGAAAGTTATACTACTTTTTGACATGGAATTAGGGTAATTTTTAATTTCAGATGGCTGCGGAAAATATGACTAACGGTACTACGCGGAGCTGCGGCGCAGGTCCATAAAAATTATATATTATTTATTCTCGTTAGTGCAGGTATAAAACGCTGGAAAATGGTTTCTACTAACACCTTGTATCATAGAAAAACTCCTTATCGAAGCATTTCGTTGATATTTTGTACTTCTTTCAAAGGAGGTCATTGAACTCAACAATTAAACTGACGTGGTTTCTAAATAAGCAGGGATGCTCGGAACGGAATTTTTCCGAAGCGTTCCGATCAAATTTTTGATCTTTTGAGATTACGCGTAGTAGCTACGGTATTTTGAAGGCGCACGCCACAATCTCCCTTGCGCGTCTCGAGTGGAGTTACGTTTTGGGAGTTTTCAAATTTTTTCTGTGAATT</canonical>
            <polymorphic>ACCAGAGAGGAGAGATAGCCGTACTTGAGCTTTATTGGCAAATCAAAATCATCTAGAGCCGTTTCCTTGACTTGCAAATTGTCGAGTTTCACATCTCCTGAAAATTATATGATTGGGAAACTTCCTGATACCGTTGTCCATGAGAAGAAGACTTACCTCCCCAAATTCCGATATTAAGTTGTGAAGAGTCCAAATTATCGACAAAGTCGCCAAGGAACCTGTTGAGCAGGTCGGCGACCAGCGATTCAAAAACCATCCTGTAAGATTAACCGTTGCAGATAAGCATAGAGAAAAATTGAACAGAAAATGTTATTTTACGATCCAAGGGAAAGCATAATAAAATTGGTGGAAAAACAATTTTTCGCAGAAGAAGATGGAAAGAAGAAGAATAATAGGAAAGTGTACAGAAGATGATGCGTAAACAAAACCGAGAGTTAGATATAACACTGTGTTTAGAAAAGGAAGAAGGCGGCAGAAATTAAAAAAAATATTGGTGATGSTTTTGTTTGCTCCCACAATAGGAATAGCGGAGGAGGTGAGTTATAGACAAAATGGAAAGTTATACTACTTTTTGACATGGAATTAGGGTAATTTTTAATTTCAGATGGCTGCGGAAAATATGACTAACGGTACTACGCGGAGCTGCGGCGCAGGTCCATAAAAATTATATATTATTTATTCTCGTTAGTGCAGGTATAAAACGCTGGAAAATGGTTTCTACTAACACCTTGTATCATAGAAAAACTCCTTATCGAAGCATTTCGTTGATATTTTGTACTTCTTTCAAAGGAGGTCATTGAACTCAACAATTAAACTGACGTGGTTTCTAAATAAGCAGGGATGCTCGGAACGGAATTTTTCCGAAGCGTTCCGATCAAATTTTTGATCTTTTGAGATTACGCGTAGTAGCTACGGTATTTTGAAGGCGCACGCCACAATCTCCCTTGCGCGTCTCGAGTGGAGTTACGTTTTGGGAGTTTTCAAATTTTTTCTGTGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGAAGATGGAAAGAAGAAGA</pcr_primer_p1>
		<pcr_primer_p2>CAGCCATCTGAAATTAAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAAGAAGATGGAAAGAAGAAGAATAATAGGAAAGTGTACAGAAGATGATGCGTAAACAAAACCGAGAGTTAGATATAACACTGTGTTTAGAAAAGGAAGAAGGCGGCAGAAATTAAAAAAAATATTGGTGATGGTTTTGTTTGCTCCCACAATAGGAATAGCGGAGGAGGTGAGTTATAGACAAAATGGAAAGTTATACTACTTTTTGACATGGAATTAGGGTAATTTTTAATTTCAGATGGCTG</canonical_amplicon>
		<polymorphic_amplicon>AGAAGAAGATGGAAAGAAGAAGAATAATAGGAAAGTGTACAGAAGATGATGCGTAAACAAAACCGAGAGTTAGATATAACACTGTGTTTAGAAAAGGAAGAAGGCGGCAGAAATTAAAAAAAATATTGGTGATGSTTTTGTTTGCTCCCACAATAGGAATAGCGGAGGAGGTGAGTTATAGACAAAATGGAAAGTTATACTACTTTTTGACATGGAATTAGGGTAATTTTTAATTTCAGATGGCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7323</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>874970</contig_pos>
        <strand>+</strand>
        <context>TTATATTCCA[A/G]CCACACAACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTTCCATCAACATTTCCCAAGCGTTTTTCTTCACGTTTTTATATTCCA</left_flank>
        <right_flank>CCACACAACCGTTCATCTATTCGATCTAGATGACAGACGAGGTTGTGGAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAGAAAAAAAAAGAAATCCAGAATCCGGAAATTTTTGCCGTGAGTCATAAATCAGAAACAACCAGAACCTCAATCTCAAAAAATATTCATGTTATTCCTTTGATTTTAGGTATCTATCATTTGTCTTCAATTTCGTTGTAGTTGTATCAAAATTCTCTTCAGTATTCTACATTTAGCAATTTTGGAACTTTGAACCCCAAGTTCCATTTGGGGGATCTTCAGACACAACTCAATCTTACTCCCAAAAAACTCTTTTGTTGTACTCTTCGTCGCAATTATCCATGGTTTCCCTCCTCTCCGAAAAAAGAGCTCTGCTTTAGTATTTTTCGGAAATGTGCTCACTAGTGCGCGATGAATTATGGCTACTACTGCTCGGTGGGCTTGTCGTTGTGAAGAAGAAAAAAAAAAGAAAGAGGAGATCCGTTTCCATGTGCCCTCAAGCTTCTTTGTTTCCATCAACATTTCCCAAGCGTTTTTCTTCACGTTTTTATATTCCAACCACACAACCGTTCATCTATTCGATCTAGATGACAGACGAGGTTGTGGAGAAATGTATCTGCCAGATTTGTCAGTGCGGGTAAGTTCTGAATCAAATCACCTGGAAATTTAACGAAGGATACTGATTCTGATTTGATAAGATTTTTTCTTTCAATTTCTTTATTCTTTTGTCGAAAGTCAACGGTTTCAGAAGACACAAGTGTGATCATGTGGATGCTGATTTAGGATTTGGAAATGGAATTGAAGAGAATCAAACCGAATACGGGATGCAATATCCAGCAAAGCAGGCACCCAGGTTTCGTTTTTCATATTTCGGATTACTGTAATTCAGTTCGTAGAGTTAGGTTATCAACTTTCGATGAGAGCTTGTAAAATTCATCTGAACTATTTGAAAGTAAGAATTTGTTTTCATAATATTTGAAAAAAGCCTAGTAAATCTAATATTTTAATTACCTTAAACATTGTAATAGAATGATTCCCTCACTTTCAGCTTTGAGCCA</canonical>
            <polymorphic>GATAGAAAAAAAAAGAAATCCAGAATCCGGAAATTTTTGCCGTGAGTCATAAATCAGAAACAACCAGAACCTCAATCTCAAAAAATATTCATGTTATTCCTTTGATTTTAGGTATCTATCATTTGTCTTCAATTTCGTTGTAGTTGTATCAAAATTCTCTTCAGTATTCTACATTTAGCAATTTTGGAACTTTGAACCCCAAGTTCCATTTGGGGGATCTTCAGACACAACTCAATCTTACTCCCAAAAAACTCTTTTGTTGTACTCTTCGTCGCAATTATCCATGGTTTCCCTCCTCTCCGAAAAAAGAGCTCTGCTTTAGTATTTTTCGGAAATGTGCTCACTAGTGCGCGATGAATTATGGCTACTACTGCTCGGTGGGCTTGTCGTTGTGAAGAAGAAAAAAAAAAGAAAGAGGAGATCCGTTTCCATGTGCCCTCAAGCTTCTTTGTTTCCATCAACATTTCCCAAGCGTTTTTCTTCACGTTTTTATATTCCARCCACACAACCGTTCATCTATTCGATCTAGATGACAGACGAGGTTGTGGAGAAATGTATCTGCCAGATTTGTCAGTGCGGGTAAGTTCTGAATCAAATCACCTGGAAATTTAACGAAGGATACTGATTCTGATTTGATAAGATTTTTTCTTTCAATTTCTTTATTCTTTTGTCGAAAGTCAACGGTTTCAGAAGACACAAGTGTGATCATGTGGATGCTGATTTAGGATTTGGAAATGGAATTGAAGAGAATCAAACCGAATACGGGATGCAATATCCAGCAAAGCAGGCACCCAGGTTTCGTTTTTCATATTTCGGATTACTGTAATTCAGTTCGTAGAGTTAGGTTATCAACTTTCGATGAGAGCTTGTAAAATTCATCTGAACTATTTGAAAGTAAGAATTTGTTTTCATAATATTTGAAAAAAGCCTAGTAAATCTAATATTTTAATTACCTTAAACATTGTAATAGAATGATTCCCTCACTTTCAGCTTTGAGCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGATGAATTATGGCTACTACT</pcr_primer_p1>
		<pcr_primer_p2>CAGGTGATTTGATTCAGAACTTA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GCGATGAATTATGGCTACTACTGCTCGGTGGGCTTGTCGTTGTGAAGAAGAAAAAAAAAAGAAAGAGGAGATCCGTTTCCATGTGCCCTCAAGCTTCTTTGTTTCCATCAACATTTCCCAAGCGTTTTTCTTCACGTTTTTATATTCCAACCACACAACCGTTCATCTATTCGATCTAGATGACAGACGAGGTTGTGGAGAAATGTATCTGCCAGATTTGTCAGTGCGGGTAAGTTCTGAATCAAATCACCTG</canonical_amplicon>
		<polymorphic_amplicon>GCGATGAATTATGGCTACTACTGCTCGGTGGGCTTGTCGTTGTGAAGAAGAAAAAAAAAAGAAAGAGGAGATCCGTTTCCATGTGCCCTCAAGCTTCTTTGTTTCCATCAACATTTCCCAAGCGTTTTTCTTCACGTTTTTATATTCCARCCACACAACCGTTCATCTATTCGATCTAGATGACAGACGAGGTTGTGGAGAAATGTATCTGCCAGATTTGTCAGTGCGGGTAAGTTCTGAATCAAATCACCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7326</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>940649</contig_pos>
        <strand></strand>
        <context>atttggttta[A/G]agggtacatg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGATGACATCTAAAAAGGTACATCGAGTTCTCGGAAAAAATTTGGTTTA</left_flank>
        <right_flank>AGGGTACATGGGATCTTGGACCTATGATTTTCAGCAAAAAGCGAAATAGT</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTAAGATGAGCTCCGGCGACAATAGCGGCGTCGCATTGACCCTGTCTGATCGAGTCGATGGCAAGTTGGAGTGCCAAAAGTGAAGATGAGCAAGCGGTGTCCACCGAGAACGATGGTCCTTGCAAGTCGAATGTGTATGAGATTCGGTTTGAGAACATGGAACGCACGCAACCCGTCAACGTGTAGCCCGTTACCGATTCGGGGTCTTGTGTGAGCGCTCCGGATGTTTCTGAAGCTGAGCATCCGACGAATACTCCTGTCTTTGATCCGCGGAGATCAATGGGATTTATGCCTGAAAATTTTTGGATAGAGCTTCAGAAATCAAATAGTTGGAATTTCTTCGCTTCAGATGAAATGCTCCCTTCGAATATTTGACTCTTCTTTTAATTCATCCCGTTGATTGGCGGATTTATATTTTCGTTCTAATCATCTACTAGGCCCAGAATCCAAGATGACATCTAAAAAGGTACATCGAGTTCTCGGAAAAAATTTGGTTTAAAGGGTACATGGGATCTTGGACCTATGATTTTCAGCAAAAAGCGAAATAGTCTACATGTACCACAAAACTCCATGAGCCCTTGGAACCAATGTGCCCTAAGAACTAGATATACCCTTTTTCGATATACCCTTGAATGCTGGACCCATCTATCATCACAGTTTGAACTCTCCCTATTCTTCGCATCTCAGAATCCGAAACCCGGCGATTTGCACTTTAACCGATTCCTAATTTCTGTCATGTTATCTTTTCTCCCTTTTCAATTGTTTGACTTGTTCAATATTCGTCTAAATCATAAAAGTGGAACATCCTACTTGTACGGGGTCAGTAGTGCGCGCGCATGACGGTCTCAAGGTTACCACTGCCAGGTACATCGGGAGAGAGACACAGTTTTCCGATTTCCGTCTCCGTCCCGAAGAGTGGGATAAAGTGAGAGATAGAGAGGAACATACCCGCATCAACCATTGCCTCCCACGAAGCTTCAAGTAGAATCCGAACTTGTG</canonical>
            <polymorphic>TGTAAGATGAGCTCCGGCGACAATAGCGGCGTCGCATTGACCCTGTCTGATCGAGTCGATGGCAAGTTGGAGTGCCAAAAGTGAAGATGAGCAAGCGGTGTCCACCGAGAACGATGGTCCTTGCAAGTCGAATGTGTATGAGATTCGGTTTGAGAACATGGAACGCACGCAACCCGTCAACGTGTAGCCCGTTACCGATTCGGGGTCTTGTGTGAGCGCTCCGGATGTTTCTGAAGCTGAGCATCCGACGAATACTCCTGTCTTTGATCCGCGGAGATCAATGGGATTTATGCCTGAAAATTTTTGGATAGAGCTTCAGAAATCAAATAGTTGGAATTTCTTCGCTTCAGATGAAATGCTCCCTTCGAATATTTGACTCTTCTTTTAATTCATCCCGTTGATTGGCGGATTTATATTTTCGTTCTAATCATCTACTAGGCCCAGAATCCAAGATGACATCTAAAAAGGTACATCGAGTTCTCGGAAAAAATTTGGTTTARAGGGTACATGGGATCTTGGACCTATGATTTTCAGCAAAAAGCGAAATAGTCTACATGTACCACAAAACTCCATGAGCCCTTGGAACCAATGTGCCCTAAGAACTAGATATACCCTTTTTCGATATACCCTTGAATGCTGGACCCATCTATCATCACAGTTTGAACTCTCCCTATTCTTCGCATCTCAGAATCCGAAACCCGGCGATTTGCACTTTAACCGATTCCTAATTTCTGTCATGTTATCTTTTCTCCCTTTTCAATTGTTTGACTTGTTCAATATTCGTCTAAATCATAAAAGTGGAACATCCTACTTGTACGGGGTCAGTAGTGCGCGCGCATGACGGTCTCAAGGTTACCACTGCCAGGTACATCGGGAGAGAGACACAGTTTTCCGATTTCCGTCTCCGTCCCGAAGAGTGGGATAAAGTGAGAGATAGAGAGGAACATACCCGCATCAACCATTGCCTCCCACGAAGCTTCAAGTAGAATCCGAACTTGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>385 286 217 112</canonical_bands>
                <polymorphic_bands>385 329 286</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAATTCATCCCGTTGATTG</pcr_primer_p1>
		<pcr_primer_p2>GAGTTCAAACTGTGATGATAGATG</pcr_primer_p2>
		<pcr_amplicon_size>283</pcr_amplicon_size>
		<canonical_amplicon>TTAATTCATCCCGTTGATTGGCGGATTTATATTTTCGTTCTAATCATCTACTAGGCCCAGAATCCAAGATGACATCTAAAAAGGTACATCGAGTTCTCGGAAAAAATTTGGTTTAAAGGGTACATGGGATCTTGGACCTATGATTTTCAGCAAAAAGCGAAATAGTCTACATGTACCACAAAACTCCATGAGCCCTTGGAACCAATGTGCCCTAAGAACTAGATATACCCTTTTTCGATATACCCTTGAATGCTGGACCCATCTATCATCACAGTTTGAACTC</canonical_amplicon>
		<polymorphic_amplicon>TTAATTCATCCCGTTGATTGGCGGATTTATATTTTCGTTCTAATCATCTACTAGGCCCAGAATCCAAGATGACATCTAAAAAGGTACATCGAGTTCTCGGAAAAAATTTGGTTTARAGGGTACATGGGATCTTGGACCTATGATTTTCAGCAAAAAGCGAAATAGTCTACATGTACCACAAAACTCCATGAGCCCTTGGAACCAATGTGCCCTAAGAACTAGATATACCCTTTTTCGATATACCCTTGAATGCTGGACCCATCTATCATCACAGTTTGAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7327</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>940673</contig_pos>
        <strand></strand>
        <context>tcttggacct[A/T]tgattttcag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGAGTTCTCGGAAAAAATTTGGTTTAAAGGGTACATGGGATCTTGGACCT</left_flank>
        <right_flank>TGATTTTCAGCAAAAAGCGAAATAGTCTACATGTACCACAAAACTCCATG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCGGCGTCGCATTGACCCTGTCTGATCGAGTCGATGGCAAGTTGGAGTGCCAAAAGTGAAGATGAGCAAGCGGTGTCCACCGAGAACGATGGTCCTTGCAAGTCGAATGTGTATGAGATTCGGTTTGAGAACATGGAACGCACGCAACCCGTCAACGTGTAGCCCGTTACCGATTCGGGGTCTTGTGTGAGCGCTCCGGATGTTTCTGAAGCTGAGCATCCGACGAATACTCCTGTCTTTGATCCGCGGAGATCAATGGGATTTATGCCTGAAAATTTTTGGATAGAGCTTCAGAAATCAAATAGTTGGAATTTCTTCGCTTCAGATGAAATGCTCCCTTCGAATATTTGACTCTTCTTTTAATTCATCCCGTTGATTGGCGGATTTATATTTTCGTTCTAATCATCTACTAGGCCCAGAATCCAAGATGACATCTAAAAAGGTACATCGAGTTCTCGGAAAAAATTTGGTTTAAAGGGTACATGGGATCTTGGACCTATGATTTTCAGCAAAAAGCGAAATAGTCTACATGTACCACAAAACTCCATGAGCCCTTGGAACCAATGTGCCCTAAGAACTAGATATACCCTTTTTCGATATACCCTTGAATGCTGGACCCATCTATCATCACAGTTTGAACTCTCCCTATTCTTCGCATCTCAGAATCCGAAACCCGGCGATTTGCACTTTAACCGATTCCTAATTTCTGTCATGTTATCTTTTCTCCCTTTTCAATTGTTTGACTTGTTCAATATTCGTCTAAATCATAAAAGTGGAACATCCTACTTGTACGGGGTCAGTAGTGCGCGCGCATGACGGTCTCAAGGTTACCACTGCCAGGTACATCGGGAGAGAGACACAGTTTTCCGATTTCCGTCTCCGTCCCGAAGAGTGGGATAAAGTGAGAGATAGAGAGGAACATACCCGCATCAACCATTGCCTCCCACGAAGCTTCAAGTAGAATCCGAACTTGTGGATCCATGAAATTTGCTTGTTTTG</canonical>
            <polymorphic>AGCGGCGTCGCATTGACCCTGTCTGATCGAGTCGATGGCAAGTTGGAGTGCCAAAAGTGAAGATGAGCAAGCGGTGTCCACCGAGAACGATGGTCCTTGCAAGTCGAATGTGTATGAGATTCGGTTTGAGAACATGGAACGCACGCAACCCGTCAACGTGTAGCCCGTTACCGATTCGGGGTCTTGTGTGAGCGCTCCGGATGTTTCTGAAGCTGAGCATCCGACGAATACTCCTGTCTTTGATCCGCGGAGATCAATGGGATTTATGCCTGAAAATTTTTGGATAGAGCTTCAGAAATCAAATAGTTGGAATTTCTTCGCTTCAGATGAAATGCTCCCTTCGAATATTTGACTCTTCTTTTAATTCATCCCGTTGATTGGCGGATTTATATTTTCGTTCTAATCATCTACTAGGCCCAGAATCCAAGATGACATCTAAAAAGGTACATCGAGTTCTCGGAAAAAATTTGGTTTAAAGGGTACATGGGATCTTGGACCTWTGATTTTCAGCAAAAAGCGAAATAGTCTACATGTACCACAAAACTCCATGAGCCCTTGGAACCAATGTGCCCTAAGAACTAGATATACCCTTTTTCGATATACCCTTGAATGCTGGACCCATCTATCATCACAGTTTGAACTCTCCCTATTCTTCGCATCTCAGAATCCGAAACCCGGCGATTTGCACTTTAACCGATTCCTAATTTCTGTCATGTTATCTTTTCTCCCTTTTCAATTGTTTGACTTGTTCAATATTCGTCTAAATCATAAAAGTGGAACATCCTACTTGTACGGGGTCAGTAGTGCGCGCGCATGACGGTCTCAAGGTTACCACTGCCAGGTACATCGGGAGAGAGACACAGTTTTCCGATTTCCGTCTCCGTCCCGAAGAGTGGGATAAAGTGAGAGATAGAGAGGAACATACCCGCATCAACCATTGCCTCCCACGAAGCTTCAAGTAGAATCCGAACTTGTGGATCCATGAAATTTGCTTGTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAATTCATCCCGTTGATTG</pcr_primer_p1>
		<pcr_primer_p2>GAGTTCAAACTGTGATGATAGATG</pcr_primer_p2>
		<pcr_amplicon_size>283</pcr_amplicon_size>
		<canonical_amplicon>TTAATTCATCCCGTTGATTGGCGGATTTATATTTTCGTTCTAATCATCTACTAGGCCCAGAATCCAAGATGACATCTAAAAAGGTACATCGAGTTCTCGGAAAAAATTTGGTTTAAAGGGTACATGGGATCTTGGACCTATGATTTTCAGCAAAAAGCGAAATAGTCTACATGTACCACAAAACTCCATGAGCCCTTGGAACCAATGTGCCCTAAGAACTAGATATACCCTTTTTCGATATACCCTTGAATGCTGGACCCATCTATCATCACAGTTTGAACTC</canonical_amplicon>
		<polymorphic_amplicon>TTAATTCATCCCGTTGATTGGCGGATTTATATTTTCGTTCTAATCATCTACTAGGCCCAGAATCCAAGATGACATCTAAAAAGGTACATCGAGTTCTCGGAAAAAATTTGGTTTAAAGGGTACATGGGATCTTGGACCTWTGATTTTCAGCAAAAAGCGAAATAGTCTACATGTACCACAAAACTCCATGAGCCCTTGGAACCAATGTGCCCTAAGAACTAGATATACCCTTTTTCGATATACCCTTGAATGCTGGACCCATCTATCATCACAGTTTGAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7328</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>944822</contig_pos>
        <strand></strand>
        <context>CTGTAACTTT[T/C]AAATCAAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAATAAAAGGAAGAAGGCTACGTCTACGTCGTTTTTTTTACTGTAACTTT</left_flank>
        <right_flank>AAATCAAAACTACCACCTACAAGATGTAATTACATCAGTTTTTGGTTGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGACTGATCTGCAATCAGCCTAATCAAACTCTTCAGAATTCGGAGCCTCTCAGCGGCAAATATGAATTAATGAGGTCTACGTTCAACTTTCGAACAGTCAATTTTTCAAATGCGCTCTCTCTTTTTTGATACCTCTCTAAATATCTAGCATAACGTTTCGAAGTTTTCTGTTGCTATTCACAAAGGTGCCTTGCTGAAAATATCTGGAATTCTCGGCATATCAAATTCAAATTTTTAGGCTGATGCGTTCCTCATACTGTAAAAAAGAGGGAATAAAAGAGAAGACAATCGAATGATTCACCATCGGAATTTAATCTATTTGAGCAAAAGAATGGTAGGCGGTATGCCATTCAATCTACTCTGAGAGCACAAAATTGATTGAAAATCGTTTTGCGTGGGATGTCTCCCGAACTGAAAAAAAAAGAAGTTTCAGATGAATAATAGAAACAAAATAAAAGGAAGAAGGCTACGTCTACGTCGTTTTTTTTACTGTAACTTTTAAATCAAAACTACCACCTACAAGATGTAATTACATCAGTTTTTGGTTGATTCTGGTTTCTGTCATCAACTAAAAATGCCTGGTTTGACCGATACGACAAACCACCCAAGGGTTAAAAAATTACTGATTTTAGCGGTGTGGTTGGGAGAGAATAAAAGTGAAAAAAGAAGAAAGTAATAGTACAGAGCCGTCAAAAACAATTACAGTAATTCAGTTTGAACCTTCTTCTTCTTCTCTTTCCTGTCAATGGCATGATACTGAAATGTTTTTTGCAATTTGTAGTTTGACAAGTTACAAGATAGGACGTCATCAAAATAATGGAATGATTGTGATCTATTCCTTCCGAATTGTTCAACAGTACAATTCAACAAACAGTTGATAACGACTGATGACGTCGTCGTCGTTTTTTTGATGATGTTTGGAATTCTCATCATTCCAAAAAATCATTTATTCTTTTTCGTATTCTGAACATATATAGTTTCCTACATGTTAATAGATGGA</canonical>
            <polymorphic>CGACTGATCTGCAATCAGCCTAATCAAACTCTTCAGAATTCGGAGCCTCTCAGCGGCAAATATGAATTAATGAGGTCTACGTTCAACTTTCGAACAGTCAATTTTTCAAATGCGCTCTCTCTTTTTTGATACCTCTCTAAATATCTAGCATAACGTTTCGAAGTTTTCTGTTGCTATTCACAAAGGTGCCTTGCTGAAAATATCTGGAATTCTCGGCATATCAAATTCAAATTTTTAGGCTGATGCGTTCCTCATACTGTAAAAAAGAGGGAATAAAAGAGAAGACAATCGAATGATTCACCATCGGAATTTAATCTATTTGAGCAAAAGAATGGTAGGCGGTATGCCATTCAATCTACTCTGAGAGCACAAAATTGATTGAAAATCGTTTTGCGTGGGATGTCTCCCGAACTGAAAAAAAAAGAAGTTTCAGATGAATAATAGAAACAAAATAAAAGGAAGAAGGCTACGTCTACGTCGTTTTTTTTACTGTAACTTTYAAATCAAAACTACCACCTACAAGATGTAATTACATCAGTTTTTGGTTGATTCTGGTTTCTGTCATCAACTAAAAATGCCTGGTTTGACCGATACGACAAACCACCCAAGGGTTAAAAAATTACTGATTTTAGCGGTGTGGTTGGGAGAGAATAAAAGTGAAAAAAGAAGAAAGTAATAGTACAGAGCCGTCAAAAACAATTACAGTAATTCAGTTTGAACCTTCTTCTTCTTCTCTTTCCTGTCAATGGCATGATACTGAAATGTTTTTTGCAATTTGTAGTTTGACAAGTTACAAGATAGGACGTCATCAAAATAATGGAATGATTGTGATCTATTCCTTCCGAATTGTTCAACAGTACAATTCAACAAACAGTTGATAACGACTGATGACGTCGTCGTCGTTTTTTTGATGATGTTTGGAATTCTCATCATTCCAAAAAATCATTTATTCTTTTTCGTATTCTGAACATATATAGTTTCCTACATGTTAATAGATGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>377 244 188 113 67 11</canonical_bands>
                <polymorphic_bands>377 301 244 67 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAATAAAAGGAAGAAGGCTAC</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTGACGGCTCTGTACTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAATAAAAGGAAGAAGGCTACGTCTACGTCGTTTTTTTTACTGTAACTTTTAAATCAAAACTACCACCTACAAGATGTAATTACATCAGTTTTTGGTTGATTCTGGTTTCTGTCATCAACTAAAAATGCCTGGTTTGACCGATACGACAAACCACCCAAGGGTTAAAAAATTACTGATTTTAGCGGTGTGGTTGGGAGAGAATAAAAGTGAAAAAAGAAGAAAGTAATAGTACAGAGCCGTCAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>CAAAATAAAAGGAAGAAGGCTACGTCTACGTCGTTTTTTTTACTGTAACTTTYAAATCAAAACTACCACCTACAAGATGTAATTACATCAGTTTTTGGTTGATTCTGGTTTCTGTCATCAACTAAAAATGCCTGGTTTGACCGATACGACAAACCACCCAAGGGTTAAAAAATTACTGATTTTAGCGGTGTGGTTGGGAGAGAATAAAAGTGAAAAAAGAAGAAAGTAATAGTACAGAGCCGTCAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7329</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>944761</contig_pos>
        <strand></strand>
        <context>TTCAGATGAA[T/A]AATAGAAACA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTTGCGTGGGATGTCTCCCGAACTGAAAAAAAAAGAAGTTTCAGATGAA</left_flank>
        <right_flank>AATAGAAACAAAATAAAAGGAAGAAGGCTACGTCTACGTCGTTTTTTTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCATCAAAACTCTTTGAGGCGAGGATCTAACTAAGGCCTAAGTTACGGATTTTATTCTACGACTGATCTGCAATCAGCCTAATCAAACTCTTCAGAATTCGGAGCCTCTCAGCGGCAAATATGAATTAATGAGGTCTACGTTCAACTTTCGAACAGTCAATTTTTCAAATGCGCTCTCTCTTTTTTGATACCTCTCTAAATATCTAGCATAACGTTTCGAAGTTTTCTGTTGCTATTCACAAAGGTGCCTTGCTGAAAATATCTGGAATTCTCGGCATATCAAATTCAAATTTTTAGGCTGATGCGTTCCTCATACTGTAAAAAAGAGGGAATAAAAGAGAAGACAATCGAATGATTCACCATCGGAATTTAATCTATTTGAGCAAAAGAATGGTAGGCGGTATGCCATTCAATCTACTCTGAGAGCACAAAATTGATTGAAAATCGTTTTGCGTGGGATGTCTCCCGAACTGAAAAAAAAAGAAGTTTCAGATGAATAATAGAAACAAAATAAAAGGAAGAAGGCTACGTCTACGTCGTTTTTTTTACTGTAACTTTTAAATCAAAACTACCACCTACAAGATGTAATTACATCAGTTTTTGGTTGATTCTGGTTTCTGTCATCAACTAAAAATGCCTGGTTTGACCGATACGACAAACCACCCAAGGGTTAAAAAATTACTGATTTTAGCGGTGTGGTTGGGAGAGAATAAAAGTGAAAAAAGAAGAAAGTAATAGTACAGAGCCGTCAAAAACAATTACAGTAATTCAGTTTGAACCTTCTTCTTCTTCTCTTTCCTGTCAATGGCATGATACTGAAATGTTTTTTGCAATTTGTAGTTTGACAAGTTACAAGATAGGACGTCATCAAAATAATGGAATGATTGTGATCTATTCCTTCCGAATTGTTCAACAGTACAATTCAACAAACAGTTGATAACGACTGATGACGTCGTCGTCGTTTTTTTGATGATGTTTGGAATTCTCATCATTCCAAA</canonical>
            <polymorphic>TTGCATCAAAACTCTTTGAGGCGAGGATCTAACTAAGGCCTAAGTTACGGATTTTATTCTACGACTGATCTGCAATCAGCCTAATCAAACTCTTCAGAATTCGGAGCCTCTCAGCGGCAAATATGAATTAATGAGGTCTACGTTCAACTTTCGAACAGTCAATTTTTCAAATGCGCTCTCTCTTTTTTGATACCTCTCTAAATATCTAGCATAACGTTTCGAAGTTTTCTGTTGCTATTCACAAAGGTGCCTTGCTGAAAATATCTGGAATTCTCGGCATATCAAATTCAAATTTTTAGGCTGATGCGTTCCTCATACTGTAAAAAAGAGGGAATAAAAGAGAAGACAATCGAATGATTCACCATCGGAATTTAATCTATTTGAGCAAAAGAATGGTAGGCGGTATGCCATTCAATCTACTCTGAGAGCACAAAATTGATTGAAAATCGTTTTGCGTGGGATGTCTCCCGAACTGAAAAAAAAAGAAGTTTCAGATGAAWAATAGAAACAAAATAAAAGGAAGAAGGCTACGTCTACGTCGTTTTTTTTACTGTAACTTTTAAATCAAAACTACCACCTACAAGATGTAATTACATCAGTTTTTGGTTGATTCTGGTTTCTGTCATCAACTAAAAATGCCTGGTTTGACCGATACGACAAACCACCCAAGGGTTAAAAAATTACTGATTTTAGCGGTGTGGTTGGGAGAGAATAAAAGTGAAAAAAGAAGAAAGTAATAGTACAGAGCCGTCAAAAACAATTACAGTAATTCAGTTTGAACCTTCTTCTTCTTCTCTTTCCTGTCAATGGCATGATACTGAAATGTTTTTTGCAATTTGTAGTTTGACAAGTTACAAGATAGGACGTCATCAAAATAATGGAATGATTGTGATCTATTCCTTCCGAATTGTTCAACAGTACAATTCAACAAACAGTTGATAACGACTGATGACGTCGTCGTCGTTTTTTTGATGATGTTTGGAATTCTCATCATTCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCGGAATTTAATCTATTTGAG</pcr_primer_p1>
		<pcr_primer_p2>AGAATCAACCAAAAACTGATGTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CATCGGAATTTAATCTATTTGAGCAAAAGAATGGTAGGCGGTATGCCATTCAATCTACTCTGAGAGCACAAAATTGATTGAAAATCGTTTTGCGTGGGATGTCTCCCGAACTGAAAAAAAAAGAAGTTTCAGATGAATAATAGAAACAAAATAAAAGGAAGAAGGCTACGTCTACGTCGTTTTTTTTACTGTAACTTTTAAATCAAAACTACCACCTACAAGATGTAATTACATCAGTTTTTGGTTGATTCT</canonical_amplicon>
		<polymorphic_amplicon>CATCGGAATTTAATCTATTTGAGCAAAAGAATGGTAGGCGGTATGCCATTCAATCTACTCTGAGAGCACAAAATTGATTGAAAATCGTTTTGCGTGGGATGTCTCCCGAACTGAAAAAAAAAGAAGTTTCAGATGAAWAATAGAAACAAAATAAAAGGAAGAAGGCTACGTCTACGTCGTTTTTTTTACTGTAACTTTTAAATCAAAACTACCACCTACAAGATGTAATTACATCAGTTTTTGGTTGATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7330</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>1057539</contig_pos>
        <strand>+</strand>
        <context>TTATTTTACA[C/T]ACCAGAGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGTACCACTTACTTTTCTTTTATCTTTTCGTTTTTCTCCTTATTTTACA</left_flank>
        <right_flank>ACCAGAGAAAATATTCAAAAATATTCAACTGTCATTCAAACTTACATTCC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAGAAGACTCAGTTTTCCGCGCGGAAAAAGCGAAGAGAAAAAGAAGGGGTCTGTCTCTAAAAGTTTGTTTATTTTTCGAATTTCGCTCACTGTCATCTCGTAATCTCCAATTCAATGTGTCGTGCGTAACTCCCATTTTTTGAAATCCTTTCTCATCTTTTCCTAGCTTGCTGCACTATTTCCCCCTGTATACTGTAGACATCTTCTTATTGATTGATCCGTTCCATGCTCTCGGCTATTTTTTTTTGAAATATTCAGATCAGTGTGCATCTCACCGAGGCGGATGATTTTCAAATTTGAAATCATAGCCCTATCAGTTATCTTATCCTTTAACACCTTCTCAAGAAACTATTTCATAACAAAAATTTGAGATGTCAGCTTTTATATTTTTTGACTAACTCTTCTTCGTGTATGTAGGTCTGTACCTTTTTTTTAATTTCGGAAGTTCGGTACCACTTACTTTTCTTTTATCTTTTCGTTTTTCTCCTTATTTTACACACCAGAGAAAATATTCAAAAATATTCAACTGTCATTCAAACTTACATTCCCTAATATCCCAGAACAGAATCCTCAAAGCCAGTCGTCTGATTTCGACATTGTCTGACGTAAAAGAAATATAATGTAGTGTACTTGAAGAATAATCAAAAATAGAAATACAAGTACAAATCTCTAAAAATTACTTATCTTTCTCTACCAAATCTGTATCCTTCGTGATTTCTGCTCCCTCAAATCCGCGAGAAATCGTGTTCCAATCCACCAAACCAAAAGACCACATATTTTCTAATATTTGCTCACAGTTCTCTTTTGAGTTACTCTCAAGTTTTTATACATTATCTTACAAAAACCGAAGTCAAGTTCTTCATCCCTCTATTGGCCTTTCCAATTACTCTTTCTTCTTTTTTCGAAATGACCCACCAAGTTTTATTTCGGTGCTAAAGGACGCTATTTATAAACAAGAATCGACGGTAATAGTTGGTAACTCGACACTTTTTTTTGAA</canonical>
            <polymorphic>TGAAGAAGACTCAGTTTTCCGCGCGGAAAAAGCGAAGAGAAAAAGAAGGGGTCTGTCTCTAAAAGTTTGTTTATTTTTCGAATTTCGCTCACTGTCATCTCGTAATCTCCAATTCAATGTGTCGTGCGTAACTCCCATTTTTTGAAATCCTTTCTCATCTTTTCCTAGCTTGCTGCACTATTTCCCCCTGTATACTGTAGACATCTTCTTATTGATTGATCCGTTCCATGCTCTCGGCTATTTTTTTTTGAAATATTCAGATCAGTGTGCATCTCACCGAGGCGGATGATTTTCAAATTTGAAATCATAGCCCTATCAGTTATCTTATCCTTTAACACCTTCTCAAGAAACTATTTCATAACAAAAATTTGAGATGTCAGCTTTTATATTTTTTGACTAACTCTTCTTCGTGTATGTAGGTCTGTACCTTTTTTTTAATTTCGGAAGTTCGGTACCACTTACTTTTCTTTTATCTTTTCGTTTTTCTCCTTATTTTACAYACCAGAGAAAATATTCAAAAATATTCAACTGTCATTCAAACTTACATTCCCTAATATCCCAGAACAGAATCCTCAAAGCCAGTCGTCTGATTTCGACATTGTCTGACGTAAAAGAAATATAATGTAGTGTACTTGAAGAATAATCAAAAATAGAAATACAAGTACAAATCTCTAAAAATTACTTATCTTTCTCTACCAAATCTGTATCCTTCGTGATTTCTGCTCCCTCAAATCCGCGAGAAATCGTGTTCCAATCCACCAAACCAAAAGACCACATATTTTCTAATATTTGCTCACAGTTCTCTTTTGAGTTACTCTCAAGTTTTTATACATTATCTTACAAAAACCGAAGTCAAGTTCTTCATCCCTCTATTGGCCTTTCCAATTACTCTTTCTTCTTTTTTCGAAATGACCCACCAAGTTTTATTTCGGTGCTAAAGGACGCTATTTATAAACAAGAATCGACGGTAATAGTTGGTAACTCGACACTTTTTTTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>128 120 91 90 86 75 61 54 51 45 42 33 30 22 18 16 12 10 7 5 2 2</canonical_bands>
                <polymorphic_bands>172 120 91 90 86 75 61 54 51 45 33 30 22 18 16 12 10 7 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTATCCTTTAACACCTTCTCAA</pcr_primer_p1>
		<pcr_primer_p2>AGGATTCTGTTCTGGGATATTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTATCCTTTAACACCTTCTCAAGAAACTATTTCATAACAAAAATTTGAGATGTCAGCTTTTATATTTTTTGACTAACTCTTCTTCGTGTATGTAGGTCTGTACCTTTTTTTTAATTTCGGAAGTTCGGTACCACTTACTTTTCTTTTATCTTTTCGTTTTTCTCCTTATTTTACACACCAGAGAAAATATTCAAAAATATTCAACTGTCATTCAAACTTACATTCCCTAATATCCCAGAACAGAATCCT</canonical_amplicon>
		<polymorphic_amplicon>CTTATCCTTTAACACCTTCTCAAGAAACTATTTCATAACAAAAATTTGAGATGTCAGCTTTTATATTTTTTGACTAACTCTTCTTCGTGTATGTAGGTCTGTACCTTTTTTTTAATTTCGGAAGTTCGGTACCACTTACTTTTCTTTTATCTTTTCGTTTTTCTCCTTATTTTACAYACCAGAGAAAATATTCAAAAATATTCAACTGTCATTCAAACTTACATTCCCTAATATCCCAGAACAGAATCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7331</snp_id>
        <super_contig>c003500696.Contig1</super_contig>
        <contig_pos>14326</contig_pos>
        <strand></strand>
        <context>tgaatcaact[A/G]gaaattcgct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTGGCTGTAATAGGACGCAGATAGCTCTGAAATTAGGCTGAATCAACT</left_flank>
        <right_flank>GAAATTCGCTCTAAATTGTCTTGAAACAAGCTGAAAATGAATCTAAATGA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCTAAGAAGCAGAGAACGATGTCTTCTAGTACCTATCAACCGCCGGCACCTGCACCAGCGCCAGCGCCACGAAAACCGGATTGGCAGGCGCAGTGGAAGGCCAAAATGGAGGCGAATAAGAAGGCGACCGCGGCGGCTCCAGCTCCGACGACGCCAACGACTCCACTAGTAGAAGTTGCGAAACGGAAAGAATCCGGTACCGCGGAGATACCGAAGAAGAAGAAGAAGGAGGTGACGATTGATGCGATCGAAGCGTTGATGGCGTCGACGCATAAGGAGAAAGCCGAAAAAAGTGAGTGGAATAGTCTAGAATTTATACTGAATCGAGGCTAAATTAACGAGTAATTTGGGCATTGTTTGGCTCAGAATAGTCTGAAAATAGCTAAAAATGGTTCTTAAAGTGGGATGAACAATTTTTTTTTTGGAAAAATGACTGAGAATAGTCTGAAATTGGCTGTAATAGGACGCAGATAGCTCTGAAATTAGGCTGAATCAACTAGAAATTCGCTCTAAATTGTCTTGAAACAAGCTGAAAATGAATCTAAATGACTCAAAACTCGCTTAATTTTGCCTCAAATTAACCCAGCGAGGTCTGAAATTGGTTGAAATCCGACCCATTTTTGACTGAAATAGGTCTTTCAACGGATTCAGATGGGTCTGAAATTGGGCTCAATAGCTTTAAAAAAATTATCAAATTGGTCTAGAAATTGTCTCCGCCCACTTTTAGGGCCCCGAAAATGGGATTTTATGCTCTTTGTGAGATTTATTCTGTAGTGGGCGGAGCCTAAATTTAGATTCACTCCTTTCGAAATCTGGCAAATTTAATGAGAAAATATCAGATATTTTTAATATCTGTGCATTTTAAATCCCATAAGAGATTTTTTGTTTAGAATTTATTCTGAATAGGGGCTAAATCAACCTGAAATTTGGGCACCGTTTGACTCAGAATAGTCTGGGAATAACTAAAAAAATGACTCTGAAATTGGGATAAAAAGCTGT</canonical>
            <polymorphic>GGCTAAGAAGCAGAGAACGATGTCTTCTAGTACCTATCAACCGCCGGCACCTGCACCAGCGCCAGCGCCACGAAAACCGGATTGGCAGGCGCAGTGGAAGGCCAAAATGGAGGCGAATAAGAAGGCGACCGCGGCGGCTCCAGCTCCGACGACGCCAACGACTCCACTAGTAGAAGTTGCGAAACGGAAAGAATCCGGTACCGCGGAGATACCGAAGAAGAAGAAGAAGGAGGTGACGATTGATGCGATCGAAGCGTTGATGGCGTCGACGCATAAGGAGAAAGCCGAAAAAAGTGAGTGGAATAGTCTAGAATTTATACTGAATCGAGGCTAAATTAACGAGTAATTTGGGCATTGTTTGGCTCAGAATAGTCTGAAAATAGCTAAAAATGGTTCTTAAAGTGGGATGAACAATTTTTTTTTTGGAAAAATGACTGAGAATAGTCTGAAATTGGCTGTAATAGGACGCAGATAGCTCTGAAATTAGGCTGAATCAACTRGAAATTCGCTCTAAATTGTCTTGAAACAAGCTGAAAATGAATCTAAATGACTCAAAACTCGCTTAATTTTGCCTCAAATTAACCCAGCGAGGTCTGAAATTGGTTGAAATCCGACCCATTTTTGACTGAAATAGGTCTTTCAACGGATTCAGATGGGTCTGAAATTGGGCTCAATAGCTTTAAAAAAATTATCAAATTGGTCTAGAAATTGTCTCCGCCCACTTTTAGGGCCCCGAAAATGGGATTTTATGCTCTTTGTGAGATTTATTCTGTAGTGGGCGGAGCCTAAATTTAGATTCACTCCTTTCGAAATCTGGCAAATTTAATGAGAAAATATCAGATATTTTTAATATCTGTGCATTTTAAATCCCATAAGAGATTTTTTGTTTAGAATTTATTCTGAATAGGGGCTAAATCAACCTGAAATTTGGGCACCGTTTGACTCAGAATAGTCTGGGAATAACTAAAAAAATGACTCTGAAATTGGGATAAAAAGCTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>298 204 190 141 140 27</canonical_bands>
                <polymorphic_bands>394 298 141 140 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCGAGGCTAAATTAACGAGTA</pcr_primer_p1>
		<pcr_primer_p2>AATCTCACAAAGAGCATAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>442</pcr_amplicon_size>
		<canonical_amplicon>ATCGAGGCTAAATTAACGAGTAATTTGGGCATTGTTTGGCTCAGAATAGTCTGAAAATAGCTAAAAATGGTTCTTAAAGTGGGATGAACAATTTTTTTTTTGGAAAAATGACTGAGAATAGTCTGAAATTGGCTGTAATAGGACGCAGATAGCTCTGAAATTAGGCTGAATCAACTAGAAATTCGCTCTAAATTGTCTTGAAACAAGCTGAAAATGAATCTAAATGACTCAAAACTCGCTTAATTTTGCCTCAAATTAACCCAGCGAGGTCTGAAATTGGTTGAAATCCGACCCATTTTTGACTGAAATAGGTCTTTCAACGGATTCAGATGGGTCTGAAATTGGGCTCAATAGCTTTAAAAAAATTATCAAATTGGTCTAGAAATTGTCTCCGCCCACTTTTAGGGCCCCGAAAATGGGATTTTATGCTCTTTGTGAGATT</canonical_amplicon>
		<polymorphic_amplicon>ATCGAGGCTAAATTAACGAGTAATTTGGGCATTGTTTGGCTCAGAATAGTCTGAAAATAGCTAAAAATGGTTCTTAAAGTGGGATGAACAATTTTTTTTTTGGAAAAATGACTGAGAATAGTCTGAAATTGGCTGTAATAGGACGCAGATAGCTCTGAAATTAGGCTGAATCAACTRGAAATTCGCTCTAAATTGTCTTGAAACAAGCTGAAAATGAATCTAAATGACTCAAAACTCGCTTAATTTTGCCTCAAATTAACCCAGCGAGGTCTGAAATTGGTTGAAATCCGACCCATTTTTGACTGAAATAGGTCTTTCAACGGATTCAGATGGGTCTGAAATTGGGCTCAATAGCTTTAAAAAAATTATCAAATTGGTCTAGAAATTGTCTCCGCCCACTTTTAGGGCCCCGAAAATGGGATTTTATGCTCTTTGTGAGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7332</snp_id>
        <super_contig>c003500709.Contig1</super_contig>
        <contig_pos>14723</contig_pos>
        <strand></strand>
        <context>aaatttaTTG[A/T]WCGATTCTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGACCTCGTAGAAACTTGGTTTTTCGACAGGAATGTCTCAAATTTATTG</left_flank>
        <right_flank>ACGATTCTATCAATTTCCAATAGATTCAATTTTTCCGAGTTCTAAAAGCA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGATTCATAATCCGGATGATAACAATGAGTTAGCTGGTATGGCTGCTCGACCAGTTTGGATTGGTTTGAAATGCACAGTTTCAAGGGATCCGTCGTCTTGCCTTTGGGATGATCAAAGTGGCACGGCTCAGGGGTACAATGGGTTTTCGTCCGGTGAGTTTCATTTTGCAGGTACACGAAGGTACGGTACAAGATACAAGAAGGTACAAGAAAGGTAAAAGAAGTCTAAGGTACAAGAAGCCATTGAAATATTTTGAAGCCTTTCAAATATTCACAAAAAAAAAAAACGCAGACAATTTGTCAATGGACCTACCAAATACCATCTTCCTAAGACAATTTTGACCCGAGTTATGGCGATTTGAAGTTTTCGAGAGACGTAGAGAAACAAGAGTTTCTGACTGTCTGCGTCTCTTTATGCGAAATCTTCAAATGGCTATAACTTGGCCCAAAGACCTCGTAGAAACTTGGTTTTTCGACAGGAATGTCTCAAATTTATTGAACGATTCTATCAATTTCCAATAGATTCAATTTTTCCGAGTTCTAAAAGCAATTTATTTGAAACAATAAGTATTCCGAATCTATACAAAGAGTTCGATGAAACTTAGTTTCTGTATTTCTTTGCATACAAAATTATAGTTTCTCGATAGTTTTGAACCAAAGTTTTTTTGGTTTTATTAGAAACGACACAAATTTCCTGCTAAACCCACCAGAAACCATCTTTTTACGACAATTTTAAGCCGAGTTATAACGATTTTAAGTTTTTGAGAGACGCAAAGAAACGGGAGTCTCTCACTGCCTGCGTCTCTTCATGTGAAGTCTACAAATGAACATAACTCGCCTCAACGACGTCGTAAAAACTTGATTCTTGATGATACCGTGTTATGGCCATTTCAAGATTTTGAATGAAGAGACGCAGACAGTCAGTCACTCTCGTTTCTCTGCGCCTCTCAAAAATTTCAAATCGCTATAACTCGGCTCAAGATTGTCGTAGAAAGATGG</canonical>
            <polymorphic>TCGATTCATAATCCGGATGATAACAATGAGTTAGCTGGTATGGCTGCTCGACCAGTTTGGATTGGTTTGAAATGCACAGTTTCAAGGGATCCGTCGTCTTGCCTTTGGGATGATCAAAGTGGCACGGCTCAGGGGTACAATGGGTTTTCGTCCGGTGAGTTTCATTTTGCAGGTACACGAAGGTACGGTACAAGATACAAGAAGGTACAAGAAAGGTAAAAGAAGTCTAAGGTACAAGAAGCCATTGAAATATTTTGAAGCCTTTCAAATATTCACAAAAAAAAAAAACGCAGACAATTTGTCAATGGACCTACCAAATACCATCTTCCTAAGACAATTTTGACCCGAGTTATGGCGATTTGAAGTTTTCGAGAGACGTAGAGAAACAAGAGTTTCTGACTGTCTGCGTCTCTTTATGCGAAATCTTCAAATGGCTATAACTTGGCCCAAAGACCTCGTAGAAACTTGGTTTTTCGACAGGAATGTCTCAAATTTATTGWACGATTCTATCAATTTCCAATAGATTCAATTTTTCCGAGTTCTAAAAGCAATTTATTTGAAACAATAAGTATTCCGAATCTATACAAAGAGTTCGATGAAACTTAGTTTCTGTATTTCTTTGCATACAAAATTATAGTTTCTCGATAGTTTTGAACCAAAGTTTTTTTGGTTTTATTAGAAACGACACAAATTTCCTGCTAAACCCACCAGAAACCATCTTTTTACGACAATTTTAAGCCGAGTTATAACGATTTTAAGTTTTTGAGAGACGCAAAGAAACGGGAGTCTCTCACTGCCTGCGTCTCTTCATGTGAAGTCTACAAATGAACATAACTCGCCTCAACGACGTCGTAAAAACTTGATTCTTGATGATACCGTGTTATGGCCATTTCAAGATTTTGAATGAAGAGACGCAGACAGTCAGTCACTCTCGTTTCTCTGCGCCTCTCAAAAATTTCAAATCGCTATAACTCGGCTCAAGATTGTCGTAGAAAGATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCAATGGACCTACCAAATA</pcr_primer_p1>
		<pcr_primer_p2>CTAAGTTTCATCGAACTCTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>TGTCAATGGACCTACCAAATACCATCTTCCTAAGACAATTTTGACCCGAGTTATGGCGATTTGAAGTTTTCGAGAGACGTAGAGAAACAAGAGTTTCTGACTGTCTGCGTCTCTTTATGCGAAATCTTCAAATGGCTATAACTTGGCCCAAAGACCTCGTAGAAACTTGGTTTTTCGACAGGAATGTCTCAAATTTATTGAACGATTCTATCAATTTCCAATAGATTCAATTTTTCCGAGTTCTAAAAGCAATTTATTTGAAACAATAAGTATTCCGAATCTATACAAAGAGTTCGATGAAACTTAG</canonical_amplicon>
		<polymorphic_amplicon>TGTCAATGGACCTACCAAATACCATCTTCCTAAGACAATTTTGACCCGAGTTATGGCGATTTGAAGTTTTCGAGAGACGTAGAGAAACAAGAGTTTCTGACTGTCTGCGTCTCTTTATGCGAAATCTTCAAATGGCTATAACTTGGCCCAAAGACCTCGTAGAAACTTGGTTTTTCGACAGGAATGTCTCAAATTTATTGWACGATTCTATCAATTTCCAATAGATTCAATTTTTCCGAGTTCTAAAAGCAATTTATTTGAAACAATAAGTATTCCGAATCTATACAAAGAGTTCGATGAAACTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7333</snp_id>
        <super_contig>c003500709.Contig1</super_contig>
        <contig_pos>14758</contig_pos>
        <strand>+</strand>
        <context>TTCAATTTTT[C/G]CGAGTTCTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTCTCAAATTTATTGAACGATTCTATCAATTTCCAATAGATTCAATTTTT</left_flank>
        <right_flank>CGAGTTCTAAAAGCAATTTATTTGAAACAATAAGTATTCCGAATCTATAC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTATGGCTGCTCGACCAGTTTGGATTGGTTTGAAATGCACAGTTTCAAGGGATCCGTCGTCTTGCCTTTGGGATGATCAAAGTGGCACGGCTCAGGGGTACAATGGGTTTTCGTCCGGTGAGTTTCATTTTGCAGGTACACGAAGGTACGGTACAAGATACAAGAAGGTACAAGAAAGGTAAAAGAAGTCTAAGGTACAAGAAGCCATTGAAATATTTTGAAGCCTTTCAAATATTCACAAAAAAAAAAAACGCAGACAATTTGTCAATGGACCTACCAAATACCATCTTCCTAAGACAATTTTGACCCGAGTTATGGCGATTTGAAGTTTTCGAGAGACGTAGAGAAACAAGAGTTTCTGACTGTCTGCGTCTCTTTATGCGAAATCTTCAAATGGCTATAACTTGGCCCAAAGACCTCGTAGAAACTTGGTTTTTCGACAGGAATGTCTCAAATTTATTGAACGATTCTATCAATTTCCAATAGATTCAATTTTTCCGAGTTCTAAAAGCAATTTATTTGAAACAATAAGTATTCCGAATCTATACAAAGAGTTCGATGAAACTTAGTTTCTGTATTTCTTTGCATACAAAATTATAGTTTCTCGATAGTTTTGAACCAAAGTTTTTTTGGTTTTATTAGAAACGACACAAATTTCCTGCTAAACCCACCAGAAACCATCTTTTTACGACAATTTTAAGCCGAGTTATAACGATTTTAAGTTTTTGAGAGACGCAAAGAAACGGGAGTCTCTCACTGCCTGCGTCTCTTCATGTGAAGTCTACAAATGAACATAACTCGCCTCAACGACGTCGTAAAAACTTGATTCTTGATGATACCGTGTTATGGCCATTTCAAGATTTTGAATGAAGAGACGCAGACAGTCAGTCACTCTCGTTTCTCTGCGCCTCTCAAAAATTTCAAATCGCTATAACTCGGCTCAAGATTGTCGTAGAAAGATGGTCCTAGAACGGAAATGTGCAGAATTGAAGAATTGA</canonical>
            <polymorphic>TGGTATGGCTGCTCGACCAGTTTGGATTGGTTTGAAATGCACAGTTTCAAGGGATCCGTCGTCTTGCCTTTGGGATGATCAAAGTGGCACGGCTCAGGGGTACAATGGGTTTTCGTCCGGTGAGTTTCATTTTGCAGGTACACGAAGGTACGGTACAAGATACAAGAAGGTACAAGAAAGGTAAAAGAAGTCTAAGGTACAAGAAGCCATTGAAATATTTTGAAGCCTTTCAAATATTCACAAAAAAAAAAAACGCAGACAATTTGTCAATGGACCTACCAAATACCATCTTCCTAAGACAATTTTGACCCGAGTTATGGCGATTTGAAGTTTTCGAGAGACGTAGAGAAACAAGAGTTTCTGACTGTCTGCGTCTCTTTATGCGAAATCTTCAAATGGCTATAACTTGGCCCAAAGACCTCGTAGAAACTTGGTTTTTCGACAGGAATGTCTCAAATTTATTGAACGATTCTATCAATTTCCAATAGATTCAATTTTTSCGAGTTCTAAAAGCAATTTATTTGAAACAATAAGTATTCCGAATCTATACAAAGAGTTCGATGAAACTTAGTTTCTGTATTTCTTTGCATACAAAATTATAGTTTCTCGATAGTTTTGAACCAAAGTTTTTTTGGTTTTATTAGAAACGACACAAATTTCCTGCTAAACCCACCAGAAACCATCTTTTTACGACAATTTTAAGCCGAGTTATAACGATTTTAAGTTTTTGAGAGACGCAAAGAAACGGGAGTCTCTCACTGCCTGCGTCTCTTCATGTGAAGTCTACAAATGAACATAACTCGCCTCAACGACGTCGTAAAAACTTGATTCTTGATGATACCGTGTTATGGCCATTTCAAGATTTTGAATGAAGAGACGCAGACAGTCAGTCACTCTCGTTTCTCTGCGCCTCTCAAAAATTTCAAATCGCTATAACTCGGCTCAAGATTGTCGTAGAAAGATGGTCCTAGAACGGAAATGTGCAGAATTGAAGAATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>460 362 139 39</canonical_bands>
                <polymorphic_bands>460 362 178</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTCAATGGACCTACCAAATA</pcr_primer_p1>
		<pcr_primer_p2>CTAAGTTTCATCGAACTCTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>TGTCAATGGACCTACCAAATACCATCTTCCTAAGACAATTTTGACCCGAGTTATGGCGATTTGAAGTTTTCGAGAGACGTAGAGAAACAAGAGTTTCTGACTGTCTGCGTCTCTTTATGCGAAATCTTCAAATGGCTATAACTTGGCCCAAAGACCTCGTAGAAACTTGGTTTTTCGACAGGAATGTCTCAAATTTATTGAACGATTCTATCAATTTCCAATAGATTCAATTTTTCCGAGTTCTAAAAGCAATTTATTTGAAACAATAAGTATTCCGAATCTATACAAAGAGTTCGATGAAACTTAG</canonical_amplicon>
		<polymorphic_amplicon>TGTCAATGGACCTACCAAATACCATCTTCCTAAGACAATTTTGACCCGAGTTATGGCGATTTGAAGTTTTCGAGAGACGTAGAGAAACAAGAGTTTCTGACTGTCTGCGTCTCTTTATGCGAAATCTTCAAATGGCTATAACTTGGCCCAAAGACCTCGTAGAAACTTGGTTTTTCGACAGGAATGTCTCAAATTTATTGAACGATTCTATCAATTTCCAATAGATTCAATTTTTSCGAGTTCTAAAAGCAATTTATTTGAAACAATAAGTATTCCGAATCTATACAAAGAGTTCGATGAAACTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7334</snp_id>
        <super_contig>c003500709.Contig1</super_contig>
        <contig_pos>14782</contig_pos>
        <strand>+</strand>
        <context>CAATTTATTT[A/G]AAACAWTAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCAATTTCCAATAGATTCAATTTTTCCGAGTTCTAAAAGCAATTTATTT</left_flank>
        <right_flank>AAACAATAAGTATTCCGAATCTATACAAAGAGTTCGATGAAACTTAGTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTGGTTTGAAATGCACAGTTTCAAGGGATCCGTCGTCTTGCCTTTGGGATGATCAAAGTGGCACGGCTCAGGGGTACAATGGGTTTTCGTCCGGTGAGTTTCATTTTGCAGGTACACGAAGGTACGGTACAAGATACAAGAAGGTACAAGAAAGGTAAAAGAAGTCTAAGGTACAAGAAGCCATTGAAATATTTTGAAGCCTTTCAAATATTCACAAAAAAAAAAAACGCAGACAATTTGTCAATGGACCTACCAAATACCATCTTCCTAAGACAATTTTGACCCGAGTTATGGCGATTTGAAGTTTTCGAGAGACGTAGAGAAACAAGAGTTTCTGACTGTCTGCGTCTCTTTATGCGAAATCTTCAAATGGCTATAACTTGGCCCAAAGACCTCGTAGAAACTTGGTTTTTCGACAGGAATGTCTCAAATTTATTGAACGATTCTATCAATTTCCAATAGATTCAATTTTTCCGAGTTCTAAAAGCAATTTATTTGAAACAATAAGTATTCCGAATCTATACAAAGAGTTCGATGAAACTTAGTTTCTGTATTTCTTTGCATACAAAATTATAGTTTCTCGATAGTTTTGAACCAAAGTTTTTTTGGTTTTATTAGAAACGACACAAATTTCCTGCTAAACCCACCAGAAACCATCTTTTTACGACAATTTTAAGCCGAGTTATAACGATTTTAAGTTTTTGAGAGACGCAAAGAAACGGGAGTCTCTCACTGCCTGCGTCTCTTCATGTGAAGTCTACAAATGAACATAACTCGCCTCAACGACGTCGTAAAAACTTGATTCTTGATGATACCGTGTTATGGCCATTTCAAGATTTTGAATGAAGAGACGCAGACAGTCAGTCACTCTCGTTTCTCTGCGCCTCTCAAAAATTTCAAATCGCTATAACTCGGCTCAAGATTGTCGTAGAAAGATGGTCCTAGAACGGAAATGTGCAGAATTGAAGAATTGAAAAGCCAATTTTTCCATTTTTAAA</canonical>
            <polymorphic>GATTGGTTTGAAATGCACAGTTTCAAGGGATCCGTCGTCTTGCCTTTGGGATGATCAAAGTGGCACGGCTCAGGGGTACAATGGGTTTTCGTCCGGTGAGTTTCATTTTGCAGGTACACGAAGGTACGGTACAAGATACAAGAAGGTACAAGAAAGGTAAAAGAAGTCTAAGGTACAAGAAGCCATTGAAATATTTTGAAGCCTTTCAAATATTCACAAAAAAAAAAAACGCAGACAATTTGTCAATGGACCTACCAAATACCATCTTCCTAAGACAATTTTGACCCGAGTTATGGCGATTTGAAGTTTTCGAGAGACGTAGAGAAACAAGAGTTTCTGACTGTCTGCGTCTCTTTATGCGAAATCTTCAAATGGCTATAACTTGGCCCAAAGACCTCGTAGAAACTTGGTTTTTCGACAGGAATGTCTCAAATTTATTGAACGATTCTATCAATTTCCAATAGATTCAATTTTTCCGAGTTCTAAAAGCAATTTATTTRAAACAATAAGTATTCCGAATCTATACAAAGAGTTCGATGAAACTTAGTTTCTGTATTTCTTTGCATACAAAATTATAGTTTCTCGATAGTTTTGAACCAAAGTTTTTTTGGTTTTATTAGAAACGACACAAATTTCCTGCTAAACCCACCAGAAACCATCTTTTTACGACAATTTTAAGCCGAGTTATAACGATTTTAAGTTTTTGAGAGACGCAAAGAAACGGGAGTCTCTCACTGCCTGCGTCTCTTCATGTGAAGTCTACAAATGAACATAACTCGCCTCAACGACGTCGTAAAAACTTGATTCTTGATGATACCGTGTTATGGCCATTTCAAGATTTTGAATGAAGAGACGCAGACAGTCAGTCACTCTCGTTTCTCTGCGCCTCTCAAAAATTTCAAATCGCTATAACTCGGCTCAAGATTGTCGTAGAAAGATGGTCCTAGAACGGAAATGTGCAGAATTGAAGAATTGAAAAGCCAATTTTTCCATTTTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATCAATTTCCAATAGATTCAA</pcr_primer_p1>
		<pcr_primer_p2>TCGAGAAACTATAATTTTGTATGC</pcr_primer_p2>
		<pcr_amplicon_size>140</pcr_amplicon_size>
		<canonical_amplicon>TCTATCAATTTCCAATAGATTCAATTTTTCCGAGTTCTAAAAGCAATTTATTTGAAACAATAAGTATTCCGAATCTATACAAAGAGTTCGATGAAACTTAGTTTCTGTATTTCTTTGCATACAAAATTATAGTTTCTCGA</canonical_amplicon>
		<polymorphic_amplicon>TCTATCAATTTCCAATAGATTCAATTTTTCCGAGTTCTAAAAGCAATTTATTTRAAACAATAAGTATTCCGAATCTATACAAAGAGTTCGATGAAACTTAGTTTCTGTATTTCTTTGCATACAAAATTATAGTTTCTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7335</snp_id>
        <super_contig>c003500709.Contig1</super_contig>
        <contig_pos>14788</contig_pos>
        <strand>+</strand>
        <context>ATTTRAAACA[A/T]TAAGTATTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCCAATAGATTCAATTTTTCCGAGTTCTAAAAGCAATTTATTTGAAACA</left_flank>
        <right_flank>TAAGTATTCCGAATCTATACAAAGAGTTCGATGAAACTTAGTTTCTGTAT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAAATGCACAGTTTCAAGGGATCCGTCGTCTTGCCTTTGGGATGATCAAAGTGGCACGGCTCAGGGGTACAATGGGTTTTCGTCCGGTGAGTTTCATTTTGCAGGTACACGAAGGTACGGTACAAGATACAAGAAGGTACAAGAAAGGTAAAAGAAGTCTAAGGTACAAGAAGCCATTGAAATATTTTGAAGCCTTTCAAATATTCACAAAAAAAAAAAACGCAGACAATTTGTCAATGGACCTACCAAATACCATCTTCCTAAGACAATTTTGACCCGAGTTATGGCGATTTGAAGTTTTCGAGAGACGTAGAGAAACAAGAGTTTCTGACTGTCTGCGTCTCTTTATGCGAAATCTTCAAATGGCTATAACTTGGCCCAAAGACCTCGTAGAAACTTGGTTTTTCGACAGGAATGTCTCAAATTTATTGAACGATTCTATCAATTTCCAATAGATTCAATTTTTCCGAGTTCTAAAAGCAATTTATTTGAAACAATAAGTATTCCGAATCTATACAAAGAGTTCGATGAAACTTAGTTTCTGTATTTCTTTGCATACAAAATTATAGTTTCTCGATAGTTTTGAACCAAAGTTTTTTTGGTTTTATTAGAAACGACACAAATTTCCTGCTAAACCCACCAGAAACCATCTTTTTACGACAATTTTAAGCCGAGTTATAACGATTTTAAGTTTTTGAGAGACGCAAAGAAACGGGAGTCTCTCACTGCCTGCGTCTCTTCATGTGAAGTCTACAAATGAACATAACTCGCCTCAACGACGTCGTAAAAACTTGATTCTTGATGATACCGTGTTATGGCCATTTCAAGATTTTGAATGAAGAGACGCAGACAGTCAGTCACTCTCGTTTCTCTGCGCCTCTCAAAAATTTCAAATCGCTATAACTCGGCTCAAGATTGTCGTAGAAAGATGGTCCTAGAACGGAAATGTGCAGAATTGAAGAATTGAAAAGCCAATTTTTCCATTTTTAAAAGTATT</canonical>
            <polymorphic>TTTGAAATGCACAGTTTCAAGGGATCCGTCGTCTTGCCTTTGGGATGATCAAAGTGGCACGGCTCAGGGGTACAATGGGTTTTCGTCCGGTGAGTTTCATTTTGCAGGTACACGAAGGTACGGTACAAGATACAAGAAGGTACAAGAAAGGTAAAAGAAGTCTAAGGTACAAGAAGCCATTGAAATATTTTGAAGCCTTTCAAATATTCACAAAAAAAAAAAACGCAGACAATTTGTCAATGGACCTACCAAATACCATCTTCCTAAGACAATTTTGACCCGAGTTATGGCGATTTGAAGTTTTCGAGAGACGTAGAGAAACAAGAGTTTCTGACTGTCTGCGTCTCTTTATGCGAAATCTTCAAATGGCTATAACTTGGCCCAAAGACCTCGTAGAAACTTGGTTTTTCGACAGGAATGTCTCAAATTTATTGAACGATTCTATCAATTTCCAATAGATTCAATTTTTCCGAGTTCTAAAAGCAATTTATTTGAAACAWTAAGTATTCCGAATCTATACAAAGAGTTCGATGAAACTTAGTTTCTGTATTTCTTTGCATACAAAATTATAGTTTCTCGATAGTTTTGAACCAAAGTTTTTTTGGTTTTATTAGAAACGACACAAATTTCCTGCTAAACCCACCAGAAACCATCTTTTTACGACAATTTTAAGCCGAGTTATAACGATTTTAAGTTTTTGAGAGACGCAAAGAAACGGGAGTCTCTCACTGCCTGCGTCTCTTCATGTGAAGTCTACAAATGAACATAACTCGCCTCAACGACGTCGTAAAAACTTGATTCTTGATGATACCGTGTTATGGCCATTTCAAGATTTTGAATGAAGAGACGCAGACAGTCAGTCACTCTCGTTTCTCTGCGCCTCTCAAAAATTTCAAATCGCTATAACTCGGCTCAAGATTGTCGTAGAAAGATGGTCCTAGAACGGAAATGTGCAGAATTGAAGAATTGAAAAGCCAATTTTTCCATTTTTAAAAGTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTTCCAATAGATTCAATTTT</pcr_primer_p1>
		<pcr_primer_p2>AAACTTTGGTTCAAAACTATCG</pcr_primer_p2>
		<pcr_amplicon_size>154</pcr_amplicon_size>
		<canonical_amplicon>CAATTTCCAATAGATTCAATTTTTCCGAGTTCTAAAAGCAATTTATTTGAAACAATAAGTATTCCGAATCTATACAAAGAGTTCGATGAAACTTAGTTTCTGTATTTCTTTGCATACAAAATTATAGTTTCTCGATAGTTTTGAACCAAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>CAATTTCCAATAGATTCAATTTTTCCGAGTTCTAAAAGCAATTTATTTGAAACAWTAAGTATTCCGAATCTATACAAAGAGTTCGATGAAACTTAGTTTCTGTATTTCTTTGCATACAAAATTATAGTTTCTCGATAGTTTTGAACCAAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7336</snp_id>
        <super_contig>c003500709.Contig1</super_contig>
        <contig_pos>14909</contig_pos>
        <strand>+</strand>
        <context>TTAGAAACGA[A/C]ACaaatttcc</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTTTCTCGATAGTTTTGAACCAAAGTTTTTTTGGTTTTATTAGAAACGA</left_flank>
        <right_flank>ACAAATTTCCTGCTAAACCCACCAGAAACCATCTTTTTACGACAATTTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTACAAGATACAAGAAGGTACAAGAAAGGTAAAAGAAGTCTAAGGTACAAGAAGCCATTGAAATATTTTGAAGCCTTTCAAATATTCACAAAAAAAAAAAACGCAGACAATTTGTCAATGGACCTACCAAATACCATCTTCCTAAGACAATTTTGACCCGAGTTATGGCGATTTGAAGTTTTCGAGAGACGTAGAGAAACAAGAGTTTCTGACTGTCTGCGTCTCTTTATGCGAAATCTTCAAATGGCTATAACTTGGCCCAAAGACCTCGTAGAAACTTGGTTTTTCGACAGGAATGTCTCAAATTTATTGAACGATTCTATCAATTTCCAATAGATTCAATTTTTCCGAGTTCTAAAAGCAATTTATTTGAAACAATAAGTATTCCGAATCTATACAAAGAGTTCGATGAAACTTAGTTTCTGTATTTCTTTGCATACAAAATTATAGTTTCTCGATAGTTTTGAACCAAAGTTTTTTTGGTTTTATTAGAAACGACACAAATTTCCTGCTAAACCCACCAGAAACCATCTTTTTACGACAATTTTAAGCCGAGTTATAACGATTTTAAGTTTTTGAGAGACGCAAAGAAACGGGAGTCTCTCACTGCCTGCGTCTCTTCATGTGAAGTCTACAAATGAACATAACTCGCCTCAACGACGTCGTAAAAACTTGATTCTTGATGATACCGTGTTATGGCCATTTCAAGATTTTGAATGAAGAGACGCAGACAGTCAGTCACTCTCGTTTCTCTGCGCCTCTCAAAAATTTCAAATCGCTATAACTCGGCTCAAGATTGTCGTAGAAAGATGGTCCTAGAACGGAAATGTGCAGAATTGAAGAATTGAAAAGCCAATTTTTCCATTTTTAAAAGTATTATATTTGAAACAGTTATTTTAATTATTGCTTCAAAAAAATTTGAGTAGTGGATTGTTTTATATTCGCAAGAAAACGCCAAAAATTCGCCACTAAACAAACCAAAAATCATCTTTCTACGAC</canonical>
            <polymorphic>GGTACAAGATACAAGAAGGTACAAGAAAGGTAAAAGAAGTCTAAGGTACAAGAAGCCATTGAAATATTTTGAAGCCTTTCAAATATTCACAAAAAAAAAAAACGCAGACAATTTGTCAATGGACCTACCAAATACCATCTTCCTAAGACAATTTTGACCCGAGTTATGGCGATTTGAAGTTTTCGAGAGACGTAGAGAAACAAGAGTTTCTGACTGTCTGCGTCTCTTTATGCGAAATCTTCAAATGGCTATAACTTGGCCCAAAGACCTCGTAGAAACTTGGTTTTTCGACAGGAATGTCTCAAATTTATTGAACGATTCTATCAATTTCCAATAGATTCAATTTTTCCGAGTTCTAAAAGCAATTTATTTGAAACAATAAGTATTCCGAATCTATACAAAGAGTTCGATGAAACTTAGTTTCTGTATTTCTTTGCATACAAAATTATAGTTTCTCGATAGTTTTGAACCAAAGTTTTTTTGGTTTTATTAGAAACGAMACAAATTTCCTGCTAAACCCACCAGAAACCATCTTTTTACGACAATTTTAAGCCGAGTTATAACGATTTTAAGTTTTTGAGAGACGCAAAGAAACGGGAGTCTCTCACTGCCTGCGTCTCTTCATGTGAAGTCTACAAATGAACATAACTCGCCTCAACGACGTCGTAAAAACTTGATTCTTGATGATACCGTGTTATGGCCATTTCAAGATTTTGAATGAAGAGACGCAGACAGTCAGTCACTCTCGTTTCTCTGCGCCTCTCAAAAATTTCAAATCGCTATAACTCGGCTCAAGATTGTCGTAGAAAGATGGTCCTAGAACGGAAATGTGCAGAATTGAAGAATTGAAAAGCCAATTTTTCCATTTTTAAAAGTATTATATTTGAAACAGTTATTTTAATTATTGCTTCAAAAAAATTTGAGTAGTGGATTGTTTTATATTCGCAAGAAAACGCCAAAAATTCGCCACTAAACAAACCAAAAATCATCTTTCTACGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>412 97 90 89 86 66 48 40 31 21 20</canonical_bands>
                <polymorphic_bands>432 97 90 89 86 66 48 40 31 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTATAGTTTCTCGATAGTTTTGA</pcr_primer_p1>
		<pcr_primer_p2>GAAAAATTGGCTTTTCAATTC</pcr_primer_p2>
		<pcr_amplicon_size>421</pcr_amplicon_size>
		<canonical_amplicon>AAATTATAGTTTCTCGATAGTTTTGAACCAAAGTTTTTTTGGTTTTATTAGAAACGACACAAATTTCCTGCTAAACCCACCAGAAACCATCTTTTTACGACAATTTTAAGCCGAGTTATAACGATTTTAAGTTTTTGAGAGACGCAAAGAAACGGGAGTCTCTCACTGCCTGCGTCTCTTCATGTGAAGTCTACAAATGAACATAACTCGCCTCAACGACGTCGTAAAAACTTGATTCTTGATGATACCGTGTTATGGCCATTTCAAGATTTTGAATGAAGAGACGCAGACAGTCAGTCACTCTCGTTTCTCTGCGCCTCTCAAAAATTTCAAATCGCTATAACTCGGCTCAAGATTGTCGTAGAAAGATGGTCCTAGAACGGAAATGTGCAGAATTGAAGAATTGAAAAGCCAATTTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAATTATAGTTTCTCGATAGTTTTGAACCAAAGTTTTTTTGGTTTTATTAGAAACGAMACAAATTTCCTGCTAAACCCACCAGAAACCATCTTTTTACGACAATTTTAAGCCGAGTTATAACGATTTTAAGTTTTTGAGAGACGCAAAGAAACGGGAGTCTCTCACTGCCTGCGTCTCTTCATGTGAAGTCTACAAATGAACATAACTCGCCTCAACGACGTCGTAAAAACTTGATTCTTGATGATACCGTGTTATGGCCATTTCAAGATTTTGAATGAAGAGACGCAGACAGTCAGTCACTCTCGTTTCTCTGCGCCTCTCAAAAATTTCAAATCGCTATAACTCGGCTCAAGATTGTCGTAGAAAGATGGTCCTAGAACGGAAATGTGCAGAATTGAAGAATTGAAAAGCCAATTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7337</snp_id>
        <super_contig>c003500709.Contig1</super_contig>
        <contig_pos>14946</contig_pos>
        <strand></strand>
        <context>aaccatcttt[T/C]tacgacaatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTATTAGAAACGACACAAATTTCCTGCTAAACCCACCAGAAACCATCTTT</left_flank>
        <right_flank>TACGACAATTTTAAGCCGAGTTATAACGATTTTAAGTTTTTGAGAGACGC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCTAAGGTACAAGAAGCCATTGAAATATTTTGAAGCCTTTCAAATATTCACAAAAAAAAAAAACGCAGACAATTTGTCAATGGACCTACCAAATACCATCTTCCTAAGACAATTTTGACCCGAGTTATGGCGATTTGAAGTTTTCGAGAGACGTAGAGAAACAAGAGTTTCTGACTGTCTGCGTCTCTTTATGCGAAATCTTCAAATGGCTATAACTTGGCCCAAAGACCTCGTAGAAACTTGGTTTTTCGACAGGAATGTCTCAAATTTATTGAACGATTCTATCAATTTCCAATAGATTCAATTTTTCCGAGTTCTAAAAGCAATTTATTTGAAACAATAAGTATTCCGAATCTATACAAAGAGTTCGATGAAACTTAGTTTCTGTATTTCTTTGCATACAAAATTATAGTTTCTCGATAGTTTTGAACCAAAGTTTTTTTGGTTTTATTAGAAACGACACAAATTTCCTGCTAAACCCACCAGAAACCATCTTTTTACGACAATTTTAAGCCGAGTTATAACGATTTTAAGTTTTTGAGAGACGCAAAGAAACGGGAGTCTCTCACTGCCTGCGTCTCTTCATGTGAAGTCTACAAATGAACATAACTCGCCTCAACGACGTCGTAAAAACTTGATTCTTGATGATACCGTGTTATGGCCATTTCAAGATTTTGAATGAAGAGACGCAGACAGTCAGTCACTCTCGTTTCTCTGCGCCTCTCAAAAATTTCAAATCGCTATAACTCGGCTCAAGATTGTCGTAGAAAGATGGTCCTAGAACGGAAATGTGCAGAATTGAAGAATTGAAAAGCCAATTTTTCCATTTTTAAAAGTATTATATTTGAAACAGTTATTTTAATTATTGCTTCAAAAAAATTTGAGTAGTGGATTGTTTTATATTCGCAAGAAAACGCCAAAAATTCGCCACTAAACAAACCAAAAATCATCTTTCTACGACAATTTTAAATCGAGTTATAACGATTTGAAATATTTTT</canonical>
            <polymorphic>AGTCTAAGGTACAAGAAGCCATTGAAATATTTTGAAGCCTTTCAAATATTCACAAAAAAAAAAAACGCAGACAATTTGTCAATGGACCTACCAAATACCATCTTCCTAAGACAATTTTGACCCGAGTTATGGCGATTTGAAGTTTTCGAGAGACGTAGAGAAACAAGAGTTTCTGACTGTCTGCGTCTCTTTATGCGAAATCTTCAAATGGCTATAACTTGGCCCAAAGACCTCGTAGAAACTTGGTTTTTCGACAGGAATGTCTCAAATTTATTGAACGATTCTATCAATTTCCAATAGATTCAATTTTTCCGAGTTCTAAAAGCAATTTATTTGAAACAATAAGTATTCCGAATCTATACAAAGAGTTCGATGAAACTTAGTTTCTGTATTTCTTTGCATACAAAATTATAGTTTCTCGATAGTTTTGAACCAAAGTTTTTTTGGTTTTATTAGAAACGACACAAATTTCCTGCTAAACCCACCAGAAACCATCTTTYTACGACAATTTTAAGCCGAGTTATAACGATTTTAAGTTTTTGAGAGACGCAAAGAAACGGGAGTCTCTCACTGCCTGCGTCTCTTCATGTGAAGTCTACAAATGAACATAACTCGCCTCAACGACGTCGTAAAAACTTGATTCTTGATGATACCGTGTTATGGCCATTTCAAGATTTTGAATGAAGAGACGCAGACAGTCAGTCACTCTCGTTTCTCTGCGCCTCTCAAAAATTTCAAATCGCTATAACTCGGCTCAAGATTGTCGTAGAAAGATGGTCCTAGAACGGAAATGTGCAGAATTGAAGAATTGAAAAGCCAATTTTTCCATTTTTAAAAGTATTATATTTGAAACAGTTATTTTAATTATTGCTTCAAAAAAATTTGAGTAGTGGATTGTTTTATATTCGCAAGAAAACGCCAAAAATTCGCCACTAAACAAACCAAAAATCATCTTTCTACGACAATTTTAAATCGAGTTATAACGATTTGAAATATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGATAGTTTTGAACCAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>AAATTGGCTTTTCAATTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>405</pcr_amplicon_size>
		<canonical_amplicon>TCGATAGTTTTGAACCAAAGTTTTTTTGGTTTTATTAGAAACGACACAAATTTCCTGCTAAACCCACCAGAAACCATCTTTTTACGACAATTTTAAGCCGAGTTATAACGATTTTAAGTTTTTGAGAGACGCAAAGAAACGGGAGTCTCTCACTGCCTGCGTCTCTTCATGTGAAGTCTACAAATGAACATAACTCGCCTCAACGACGTCGTAAAAACTTGATTCTTGATGATACCGTGTTATGGCCATTTCAAGATTTTGAATGAAGAGACGCAGACAGTCAGTCACTCTCGTTTCTCTGCGCCTCTCAAAAATTTCAAATCGCTATAACTCGGCTCAAGATTGTCGTAGAAAGATGGTCCTAGAACGGAAATGTGCAGAATTGAAGAATTGAAAAGCCAATTT</canonical_amplicon>
		<polymorphic_amplicon>TCGATAGTTTTGAACCAAAGTTTTTTTGGTTTTATTAGAAACGACACAAATTTCCTGCTAAACCCACCAGAAACCATCTTTYTACGACAATTTTAAGCCGAGTTATAACGATTTTAAGTTTTTGAGAGACGCAAAGAAACGGGAGTCTCTCACTGCCTGCGTCTCTTCATGTGAAGTCTACAAATGAACATAACTCGCCTCAACGACGTCGTAAAAACTTGATTCTTGATGATACCGTGTTATGGCCATTTCAAGATTTTGAATGAAGAGACGCAGACAGTCAGTCACTCTCGTTTCTCTGCGCCTCTCAAAAATTTCAAATCGCTATAACTCGGCTCAAGATTGTCGTAGAAAGATGGTCCTAGAACGGAAATGTGCAGAATTGAAGAATTGAAAAGCCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7338</snp_id>
        <super_contig>c003500709.Contig1</super_contig>
        <contig_pos>16794</contig_pos>
        <strand></strand>
        <context>ACTTCCCAAA[C/T]TCTTACGTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCTTAATTTTCAGAATTTTTTTTTAGTTCTACTCTCCAAACTTCCCAAA</left_flank>
        <right_flank>TCTTACGTTGGCGCCAAAAACCCTTGCAAATACTTCATTGACACTCCAAG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAGTGACAACGGCACCACCGGAATGTGGTAGTGGAATTATGCAAGAAGATAATAATGGAACTGTAAGTGTCAAATTATGTGAAACTCTATATATTCAAAAGAAAACGCCTGAATTTGCTTCTGAATCCACTAAAACTCATCTTTCCATGACAATTTTGAGCCGAGTTATAGCGATTTGAAATTTTTGAGAGGCGCAGAGAAACGAGAGTGACTGACTGTCTGCGTCTCTTCATGCCAAATCTTCAAATGTCTATAACTCGGCTCAAAAAAGTCGTAGAAACTTGTTTCTTAAACGNNNNNNNNNNGTCAGACACTCTCGTTTCTCTGCGTCTCTCACTAAATCCAAATCCCTATAACTCGGCTCAAAACTGTCGTAGAAAAATGATTTTTGTTGTGTTTAGCGGCAAATTTCAAGCGTTTTCTTATGAATATCTGAATATCTGAAACCTCTTAATTTTCAGAATTTTTTTTTAGTTCTACTCTCCAAACTTCCCAAACTCTTACGTTGGCGCCAAAAACCCTTGCAAATACTTCATTGACACTCCAAGCGGAACCCAAGCCCAGATTCGATTCCCAATTTTGAATCTCGATGCCTATTCGACAATTCAGTTGTATTATGGGGACAACCAAAAGCCAGACGTGACAATTTACTCCGATACTACTATGAAATGGTACACTTCTCCAACAAACACTATTAAAATGATCTTCAAACCGAGTACTGACTACACTGGCTCTAGAATCTTATCCTGGAAAGCTGAATTTGAGCCCATGCCACAGGTTACTGTACCTCGCACTACAACTACAACTCATAAAGTGATCATAACACCCGATCCAAGAAACCCATCAGGTTGTAATTCTCCTTCAATTTCAACCGAAACTGGCTATTTCACATCTCCAAATTACCCTGACCATTATCTCGATTCCATGACTTGTAAGTATTTGTTAACCACGGACACTGATAAAAGGATTCACTTGGAATTTGGAGAAATCGATTTGTT</canonical>
            <polymorphic>ACCAGTGACAACGGCACCACCGGAATGTGGTAGTGGAATTATGCAAGAAGATAATAATGGAACTGTAAGTGTCAAATTATGTGAAACTCTATATATTCAAAAGAAAACGCCTGAATTTGCTTCTGAATCCACTAAAACTCATCTTTCCATGACAATTTTGAGCCGAGTTATAGCGATTTGAAATTTTTGAGAGGCGCAGAGAAACGAGAGTGACTGACTGTCTGCGTCTCTTCATGCCAAATCTTCAAATGTCTATAACTCGGCTCAAAAAAGTCGTAGAAACTTGTTTCTTAAACGNNNNNNNNNNGTCAGACACTCTCGTTTCTCTGCGTCTCTCACTAAATCCAAATCCCTATAACTCGGCTCAAAACTGTCGTAGAAAAATGATTTTTGTTGTGTTTAGCGGCAAATTTCAAGCGTTTTCTTATGAATATCTGAATATCTGAAACCTCTTAATTTTCAGAATTTTTTTTTAGTTCTACTCTCCAAACTTCCCAAAYTCTTACGTTGGCGCCAAAAACCCTTGCAAATACTTCATTGACACTCCAAGCGGAACCCAAGCCCAGATTCGATTCCCAATTTTGAATCTCGATGCCTATTCGACAATTCAGTTGTATTATGGGGACAACCAAAAGCCAGACGTGACAATTTACTCCGATACTACTATGAAATGGTACACTTCTCCAACAAACACTATTAAAATGATCTTCAAACCGAGTACTGACTACACTGGCTCTAGAATCTTATCCTGGAAAGCTGAATTTGAGCCCATGCCACAGGTTACTGTACCTCGCACTACAACTACAACTCATAAAGTGATCATAACACCCGATCCAAGAAACCCATCAGGTTGTAATTCTCCTTCAATTTCAACCGAAACTGGCTATTTCACATCTCCAAATTACCCTGACCATTATCTCGATTCCATGACTTGTAAGTATTTGTTAACCACGGACACTGATAAAAGGATTCACTTGGAATTTGGAGAAATCGATTTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATATCTGAAACCTCTTAATTTT</pcr_primer_p1>
		<pcr_primer_p2>TGGAGAAGTGTACCATTTCATAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGAATATCTGAAACCTCTTAATTTTCAGAATTTTTTTTTAGTTCTACTCTCCAAACTTCCCAAACTCTTACGTTGGCGCCAAAAACCCTTGCAAATACTTCATTGACACTCCAAGCGGAACCCAAGCCCAGATTCGATTCCCAATTTTGAATCTCGATGCCTATTCGACAATTCAGTTGTATTATGGGGACAACCAAAAGCCAGACGTGACAATTTACTCCGATACTACTATGAAATGGTACACTTCTCCA</canonical_amplicon>
		<polymorphic_amplicon>TGAATATCTGAAACCTCTTAATTTTCAGAATTTTTTTTTAGTTCTACTCTCCAAACTTCCCAAAYTCTTACGTTGGCGCCAAAAACCCTTGCAAATACTTCATTGACACTCCAAGCGGAACCCAAGCCCAGATTCGATTCCCAATTTTGAATCTCGATGCCTATTCGACAATTCAGTTGTATTATGGGGACAACCAAAAGCCAGACGTGACAATTTACTCCGATACTACTATGAAATGGTACACTTCTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7339</snp_id>
        <super_contig>c003800583.Contig3</super_contig>
        <contig_pos>63555</contig_pos>
        <strand>+</strand>
        <context>GGTTTAGCTT[C/T]AGCCCTTCCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGCCAAGGAAGGGGAAAGAGTGGAATTGGTAATTTATTTGGTTTAGCTT</left_flank>
        <right_flank>AGCCCTTCCTATTGAAATCCTTCCCGAACAAAAACAAATTACCTAAAAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCTGGTAGTGATGAGCAAGATGTGATTGTTTCTGTGCAGACGATTCCCAAGATTGAGAAGGATGGAATCCCATCAGAATATGAATCTCAGAAGGATGAACGAGTTGTAATTTCCTGTCCGGTTTACGCAAAGCCACAAGCCAAAATCATCTGGCTCAAAGCTGGAAAGCCTCTGGAATCTGACAAATTCGTGAAGACAAGTGCCAATGGACAGAAGCTCTATCTGTTCAAACTCCGAGATACCGACTCCAGCAAGTATACCTGTATCGCCACGAATCCTGCTGGAAGTGATAAGAGAGATTTCAAAGTGAGCATGCTGGTGGCTCCATCGTTCGATGAGCCAAACATTGTTCGTCGCATTTCCGTCAACGCTGGACGCCACACAATATTGTCTTGCCCAGCCAAGGGTAGTCCGATCCCTACGATTACATGGTGAGTTGTGAGGGAAAAGCCAAGGAAGGGGAAAGAGTGGAATTGGTAATTTATTTGGTTTAGCTTCAGCCCTTCCTATTGAAATCCTTCCCGAACAAAAACAAATTACCTAAAAGAGAATTGAAAATAGGAAAAAAAGAAAGAAGAGGGAGAATAGAAGAATGAATAGAATTTTGATTAAAAAGAAAGAAGAAAAACAAGCAAACGGAAAAAAAAACAATACAACTCAAAATTGGAATTCCAGGCTCAAAGACGGTAGAGCCATTGAGCCAAACGACCGATACGTTTACTTGGATTCTGGAAAACTGTTGCAAATCAGTGATGTCGAAGGAGGGGATCAAGGAAGATATACTTGTATTGCAACGAATTCAGTGGGATCTGATGATTTGGAGAACACGCTGGATGTTGTGATTCCGCCAGTTATTGATGGAGAACCAAAAGAGACAATCAGTATAATTGAAGGATTCCCGAAGGATCTGCTTTGTGAAGTAAGGGGAAAGTTTCGAGAAAAAAAATCTGGGGTTTCTAAATTTGGGTAAATCAAATTTAGAGGCATAAAATCTGCAT</canonical>
            <polymorphic>TTGCTGGTAGTGATGAGCAAGATGTGATTGTTTCTGTGCAGACGATTCCCAAGATTGAGAAGGATGGAATCCCATCAGAATATGAATCTCAGAAGGATGAACGAGTTGTAATTTCCTGTCCGGTTTACGCAAAGCCACAAGCCAAAATCATCTGGCTCAAAGCTGGAAAGCCTCTGGAATCTGACAAATTCGTGAAGACAAGTGCCAATGGACAGAAGCTCTATCTGTTCAAACTCCGAGATACCGACTCCAGCAAGTATACCTGTATCGCCACGAATCCTGCTGGAAGTGATAAGAGAGATTTCAAAGTGAGCATGCTGGTGGCTCCATCGTTCGATGAGCCAAACATTGTTCGTCGCATTTCCGTCAACGCTGGACGCCACACAATATTGTCTTGCCCAGCCAAGGGTAGTCCGATCCCTACGATTACATGGTGAGTTGTGAGGGAAAAGCCAAGGAAGGGGAAAGAGTGGAATTGGTAATTTATTTGGTTTAGCTTYAGCCCTTCCTATTGAAATCCTTCCCGAACAAAAACAAATTACCTAAAAGAGAATTGAAAATAGGAAAAAAAGAAAGAAGAGGGAGAATAGAAGAATGAATAGAATTTTGATTAAAAAGAAAGAAGAAAAACAAGCAAACGGAAAAAAAAACAATACAACTCAAAATTGGAATTCCAGGCTCAAAGACGGTAGAGCCATTGAGCCAAACGACCGATACGTTTACTTGGATTCTGGAAAACTGTTGCAAATCAGTGATGTCGAAGGAGGGGATCAAGGAAGATATACTTGTATTGCAACGAATTCAGTGGGATCTGATGATTTGGAGAACACGCTGGATGTTGTGATTCCGCCAGTTATTGATGGAGAACCAAAAGAGACAATCAGTATAATTGAAGGATTCCCGAAGGATCTGCTTTGTGAAGTAAGGGGAAAGTTTCGAGAAAAAAAATCTGGGGTTTCTAAATTTGGGTAAATCAAATTTAGAGGCATAAAATCTGCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACGATTACATGGTGAGTTGTG</pcr_primer_p1>
		<pcr_primer_p2>GGAATTCCAATTTTGAGTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TACGATTACATGGTGAGTTGTGAGGGAAAAGCCAAGGAAGGGGAAAGAGTGGAATTGGTAATTTATTTGGTTTAGCTTCAGCCCTTCCTATTGAAATCCTTCCCGAACAAAAACAAATTACCTAAAAGAGAATTGAAAATAGGAAAAAAAGAAAGAAGAGGGAGAATAGAAGAATGAATAGAATTTTGATTAAAAAGAAAGAAGAAAAACAAGCAAACGGAAAAAAAAACAATACAACTCAAAATTGGAATTCC</canonical_amplicon>
		<polymorphic_amplicon>TACGATTACATGGTGAGTTGTGAGGGAAAAGCCAAGGAAGGGGAAAGAGTGGAATTGGTAATTTATTTGGTTTAGCTTYAGCCCTTCCTATTGAAATCCTTCCCGAACAAAAACAAATTACCTAAAAGAGAATTGAAAATAGGAAAAAAAGAAAGAAGAGGGAGAATAGAAGAATGAATAGAATTTTGATTAAAAAGAAAGAAGAAAAACAAGCAAACGGAAAAAAAAACAATACAACTCAAAATTGGAATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7340</snp_id>
        <super_contig>c003800583.Contig3</super_contig>
        <contig_pos>63754</contig_pos>
        <strand>+</strand>
        <context>GTAGAGCCAT[C/T]GAGCCAAACG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACAATACAACTCAAAATTGGAATTCCAGGCTCAAAGACGGTAGAGCCAT</left_flank>
        <right_flank>GAGCCAAACGACCGATACGTTTACTTGGATTCTGGAAAACTGTTGCAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTGCCAATGGACAGAAGCTCTATCTGTTCAAACTCCGAGATACCGACTCCAGCAAGTATACCTGTATCGCCACGAATCCTGCTGGAAGTGATAAGAGAGATTTCAAAGTGAGCATGCTGGTGGCTCCATCGTTCGATGAGCCAAACATTGTTCGTCGCATTTCCGTCAACGCTGGACGCCACACAATATTGTCTTGCCCAGCCAAGGGTAGTCCGATCCCTACGATTACATGGTGAGTTGTGAGGGAAAAGCCAAGGAAGGGGAAAGAGTGGAATTGGTAATTTATTTGGTTTAGCTTCAGCCCTTCCTATTGAAATCCTTCCCGAACAAAAACAAATTACCTAAAAGAGAATTGAAAATAGGAAAAAAAGAAAGAAGAGGGAGAATAGAAGAATGAATAGAATTTTGATTAAAAAGAAAGAAGAAAAACAAGCAAACGGAAAAAAAAACAATACAACTCAAAATTGGAATTCCAGGCTCAAAGACGGTAGAGCCATTGAGCCAAACGACCGATACGTTTACTTGGATTCTGGAAAACTGTTGCAAATCAGTGATGTCGAAGGAGGGGATCAAGGAAGATATACTTGTATTGCAACGAATTCAGTGGGATCTGATGATTTGGAGAACACGCTGGATGTTGTGATTCCGCCAGTTATTGATGGAGAACCAAAAGAGACAATCAGTATAATTGAAGGATTCCCGAAGGATCTGCTTTGTGAAGTAAGGGGAAAGTTTCGAGAAAAAAAATCTGGGGTTTCTAAATTTGGGTAAATCAAATTTAGAGGCATAAAATCTGCATTCAGTGACATAACATTCGTGAAATTTTAAAAACATTTTGGACTTCACAATTTGAAGGTCTTCAAAAATGGCAACTCAGGCTTATTTGGAGATTCTCAGGTTCGGAAAATCCAAAACATTAGAATTGTAGGCTCCTGAAATGCTGAGATTTCAAAATTTCAAAATTAGAGAATCAGAGAAATGTAAAAATTTTGAAGTAA</canonical>
            <polymorphic>AAGTGCCAATGGACAGAAGCTCTATCTGTTCAAACTCCGAGATACCGACTCCAGCAAGTATACCTGTATCGCCACGAATCCTGCTGGAAGTGATAAGAGAGATTTCAAAGTGAGCATGCTGGTGGCTCCATCGTTCGATGAGCCAAACATTGTTCGTCGCATTTCCGTCAACGCTGGACGCCACACAATATTGTCTTGCCCAGCCAAGGGTAGTCCGATCCCTACGATTACATGGTGAGTTGTGAGGGAAAAGCCAAGGAAGGGGAAAGAGTGGAATTGGTAATTTATTTGGTTTAGCTTCAGCCCTTCCTATTGAAATCCTTCCCGAACAAAAACAAATTACCTAAAAGAGAATTGAAAATAGGAAAAAAAGAAAGAAGAGGGAGAATAGAAGAATGAATAGAATTTTGATTAAAAAGAAAGAAGAAAAACAAGCAAACGGAAAAAAAAACAATACAACTCAAAATTGGAATTCCAGGCTCAAAGACGGTAGAGCCATYGAGCCAAACGACCGATACGTTTACTTGGATTCTGGAAAACTGTTGCAAATCAGTGATGTCGAAGGAGGGGATCAAGGAAGATATACTTGTATTGCAACGAATTCAGTGGGATCTGATGATTTGGAGAACACGCTGGATGTTGTGATTCCGCCAGTTATTGATGGAGAACCAAAAGAGACAATCAGTATAATTGAAGGATTCCCGAAGGATCTGCTTTGTGAAGTAAGGGGAAAGTTTCGAGAAAAAAAATCTGGGGTTTCTAAATTTGGGTAAATCAAATTTAGAGGCATAAAATCTGCATTCAGTGACATAACATTCGTGAAATTTTAAAAACATTTTGGACTTCACAATTTGAAGGTCTTCAAAAATGGCAACTCAGGCTTATTTGGAGATTCTCAGGTTCGGAAAATCCAAAACATTAGAATTGTAGGCTCCTGAAATGCTGAGATTTCAAAATTTCAAAATTAGAGAATCAGAGAAATGTAAAAATTTTGAAGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGAACAAAAACAAATTACCT</pcr_primer_p1>
		<pcr_primer_p2>ATCACTGATTTGCAACAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>CCGAACAAAAACAAATTACCTAAAAGAGAATTGAAAATAGGAAAAAAAGAAAGAAGAGGGAGAATAGAAGAATGAATAGAATTTTGATTAAAAAGAAAGAAGAAAAACAAGCAAACGGAAAAAAAAACAATACAACTCAAAATTGGAATTCCAGGCTCAAAGACGGTAGAGCCATTGAGCCAAACGACCGATACGTTTACTTGGATTCTGGAAAACTGTTGCAAATCAGTGAT</canonical_amplicon>
		<polymorphic_amplicon>CCGAACAAAAACAAATTACCTAAAAGAGAATTGAAAATAGGAAAAAAAGAAAGAAGAGGGAGAATAGAAGAATGAATAGAATTTTGATTAAAAAGAAAGAAGAAAAACAAGCAAACGGAAAAAAAAACAATACAACTCAAAATTGGAATTCCAGGCTCAAAGACGGTAGAGCCATYGAGCCAAACGACCGATACGTTTACTTGGATTCTGGAAAACTGTTGCAAATCAGTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7341</snp_id>
        <super_contig>c003800591.Contig1</super_contig>
        <contig_pos>6805</contig_pos>
        <strand>+</strand>
        <context>ACCGCAGCAT[A/G]CATGGCTACC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGGAATTCAACTTTCAGAAAACAGATGATTTTTTGGCTTACCGCAGCAT</left_flank>
        <right_flank>CATGGCTACCCATGACCAATGAATGAAAGAAGACGAGGTGTTTGCCAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACCAAATTTATGCAAAATTCAAACTCTCACTCGTAAACTGTCACTTGACACTATTTTCATGTGACTATGTTTCCGAGACCCAGGTCCTCCAGTATTTTTTCCAGATCGAATATGATCTTGTTATACCAAATGAATTGATAAACCCCATGTACTTTTCCAGGTCAGTACAGAAACCTCGGCAAAAATTGTGAGTTTTTTAATTTTCACTATTTTTTTAAATTTTCACTATTTTTTTTTGTAAAAGGTGTCATCAGATTACGTCGTATACATTGGATCCTCTCCACAATACATACTATCCATTTGACTATCCAATCGTCGCCCTGTGATAAAAATCGGAGTCCATAACTGAATACACATCGAAATTAATGAAATGGAAATTAATATTGCACGAGTTCGACAAGAATTATGGGTTTGGAAGCGGAGTGTGTAGAATATGCAGCAGAAACGCTGGAATTCAACTTTCAGAAAACAGATGATTTTTTGGCTTACCGCAGCATGCATGGCTACCCATGACCAATGAATGAAAGAAGACGAGGTGTTTGCCAAGAATGCAACAGATTTACAGATAAGGTATCCGGGAACGAGGTATGGAATATTTTAAATATTTGTTATTGCCAAAAAAACTAAAAGGATCTTTACCATAAACTAAATCTGTATTTTCCGTGATAACTCCGCCAAGCTTCCCAAAAGAGCGATATTCCCGCCTGATATAGCAGACAAATACGGTAGATAATGCGGATTTTTAATAGTTTTACAGCGAATCCAACAAGAAATGAATAACAATGTTGGGAGGGTAAAAAAAGCAATAGAGATAACAGAGTAAAATAAAAGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTTCCCTAGATGTGAAAAAATGAAAAAAAAAATGTTTTCTACAATTGAATTTTTTG</canonical>
            <polymorphic>GAACCAAATTTATGCAAAATTCAAACTCTCACTCGTAAACTGTCACTTGACACTATTTTCATGTGACTATGTTTCCGAGACCCAGGTCCTCCAGTATTTTTTCCAGATCGAATATGATCTTGTTATACCAAATGAATTGATAAACCCCATGTACTTTTCCAGGTCAGTACAGAAACCTCGGCAAAAATTGTGAGTTTTTTAATTTTCACTATTTTTTTAAATTTTCACTATTTTTTTTTGTAAAAGGTGTCATCAGATTACGTCGTATACATTGGATCCTCTCCACAATACATACTATCCATTTGACTATCCAATCGTCGCCCTGTGATAAAAATCGGAGTCCATAACTGAATACACATCGAAATTAATGAAATGGAAATTAATATTGCACGAGTTCGACAAGAATTATGGGTTTGGAAGCGGAGTGTGTAGAATATGCAGCAGAAACGCTGGAATTCAACTTTCAGAAAACAGATGATTTTTTGGCTTACCGCAGCATRCATGGCTACCCATGACCAATGAATGAAAGAAGACGAGGTGTTTGCCAAGAATGCAACAGATTTACAGATAAGGTATCCGGGAACGAGGTATGGAATATTTTAAATATTTGTTATTGCCAAAAAAACTAAAAGGATCTTTACCATAAACTAAATCTGTATTTTCCGTGATAACTCCGCCAAGCTTCCCAAAAGAGCGATATTCCCGCCTGATATAGCAGACAAATACGGTAGATAATGCGGATTTTTAATAGTTTTACAGCGAATCCAACAAGAAATGAATAACAATGTTGGGAGGGTAAAAAAAGCAATAGAGATAACAGAGTAAAATAAAAGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTTCCCTAGATGTGAAAAAATGAAAAAAAAAATGTTTTCTACAATTGAATTTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCATGC</site>
                <isoschizomers>
                    <enzyme>BbuI</enzyme>
                    <enzyme>PaeI</enzyme>
                    <enzyme>SpaHI</enzyme>
                    <enzyme>SphI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ATGCAT</site>
                <isoschizomers>
                    <enzyme>BfrBI</enzyme>
                    <enzyme>EcoT22I</enzyme>
                    <enzyme>Mph1103I</enzyme>
                    <enzyme>NsiI</enzyme>
                    <enzyme>Ppu10I</enzyme>
                    <enzyme>Zsp2I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>489 349 88 60 10 4</canonical_bands>
                <polymorphic_bands>489 353 88 60 10</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>447 374 62 53 50 14</canonical_bands>
                <polymorphic_bands>447 374 115 50 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCGGAGTCCATAACTGAATA</pcr_primer_p1>
		<pcr_primer_p2>CCGGATACCTTATCTGTAAATCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATCGGAGTCCATAACTGAATACACATCGAAATTAATGAAATGGAAATTAATATTGCACGAGTTCGACAAGAATTATGGGTTTGGAAGCGGAGTGTGTAGAATATGCAGCAGAAACGCTGGAATTCAACTTTCAGAAAACAGATGATTTTTTGGCTTACCGCAGCATGCATGGCTACCCATGACCAATGAATGAAAGAAGACGAGGTGTTTGCCAAGAATGCAACAGATTTACAGATAAGGTATCCGG</canonical_amplicon>
		<polymorphic_amplicon>AATCGGAGTCCATAACTGAATACACATCGAAATTAATGAAATGGAAATTAATATTGCACGAGTTCGACAAGAATTATGGGTTTGGAAGCGGAGTGTGTAGAATATGCAGCAGAAACGCTGGAATTCAACTTTCAGAAAACAGATGATTTTTTGGCTTACCGCAGCATRCATGGCTACCCATGACCAATGAATGAAAGAAGACGAGGTGTTTGCCAAGAATGCAACAGATTTACAGATAAGGTATCCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7342</snp_id>
        <super_contig>c003800591.Contig1</super_contig>
        <contig_pos>6833</contig_pos>
        <strand>+</strand>
        <context>AATGAATGAA[A/C]GAAGACGAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTTTTGGCTTACCGCAGCATGCATGGCTACCCATGACCAATGAATGAA</left_flank>
        <right_flank>GAAGACGAGGTGTTTGCCAAGAATGCAACAGATTTACAGATAAGGTATCC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACTCGTAAACTGTCACTTGACACTATTTTCATGTGACTATGTTTCCGAGACCCAGGTCCTCCAGTATTTTTTCCAGATCGAATATGATCTTGTTATACCAAATGAATTGATAAACCCCATGTACTTTTCCAGGTCAGTACAGAAACCTCGGCAAAAATTGTGAGTTTTTTAATTTTCACTATTTTTTTAAATTTTCACTATTTTTTTTTGTAAAAGGTGTCATCAGATTACGTCGTATACATTGGATCCTCTCCACAATACATACTATCCATTTGACTATCCAATCGTCGCCCTGTGATAAAAATCGGAGTCCATAACTGAATACACATCGAAATTAATGAAATGGAAATTAATATTGCACGAGTTCGACAAGAATTATGGGTTTGGAAGCGGAGTGTGTAGAATATGCAGCAGAAACGCTGGAATTCAACTTTCAGAAAACAGATGATTTTTTGGCTTACCGCAGCATGCATGGCTACCCATGACCAATGAATGAAAGAAGACGAGGTGTTTGCCAAGAATGCAACAGATTTACAGATAAGGTATCCGGGAACGAGGTATGGAATATTTTAAATATTTGTTATTGCCAAAAAAACTAAAAGGATCTTTACCATAAACTAAATCTGTATTTTCCGTGATAACTCCGCCAAGCTTCCCAAAAGAGCGATATTCCCGCCTGATATAGCAGACAAATACGGTAGATAATGCGGATTTTTAATAGTTTTACAGCGAATCCAACAAGAAATGAATAACAATGTTGGGAGGGTAAAAAAAGCAATAGAGATAACAGAGTAAAATAAAAGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTTCCCTAGATGTGAAAAAATGAAAAAAAAAATGTTTTCTACAATTGAATTTTTTGTTATAAAACTGATAAGCAACTCAAAACA</canonical>
            <polymorphic>TCACTCGTAAACTGTCACTTGACACTATTTTCATGTGACTATGTTTCCGAGACCCAGGTCCTCCAGTATTTTTTCCAGATCGAATATGATCTTGTTATACCAAATGAATTGATAAACCCCATGTACTTTTCCAGGTCAGTACAGAAACCTCGGCAAAAATTGTGAGTTTTTTAATTTTCACTATTTTTTTAAATTTTCACTATTTTTTTTTGTAAAAGGTGTCATCAGATTACGTCGTATACATTGGATCCTCTCCACAATACATACTATCCATTTGACTATCCAATCGTCGCCCTGTGATAAAAATCGGAGTCCATAACTGAATACACATCGAAATTAATGAAATGGAAATTAATATTGCACGAGTTCGACAAGAATTATGGGTTTGGAAGCGGAGTGTGTAGAATATGCAGCAGAAACGCTGGAATTCAACTTTCAGAAAACAGATGATTTTTTGGCTTACCGCAGCATGCATGGCTACCCATGACCAATGAATGAAMGAAGACGAGGTGTTTGCCAAGAATGCAACAGATTTACAGATAAGGTATCCGGGAACGAGGTATGGAATATTTTAAATATTTGTTATTGCCAAAAAAACTAAAAGGATCTTTACCATAAACTAAATCTGTATTTTCCGTGATAACTCCGCCAAGCTTCCCAAAAGAGCGATATTCCCGCCTGATATAGCAGACAAATACGGTAGATAATGCGGATTTTTAATAGTTTTACAGCGAATCCAACAAGAAATGAATAACAATGTTGGGAGGGTAAAAAAAGCAATAGAGATAACAGAGTAAAATAAAAGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTTCCCTAGATGTGAAAAAATGAAAAAAAAAATGTTTTCTACAATTGAATTTTTTGTTATAAAACTGATAAGCAACTCAAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTGTAGAATATGCAGCAGAA</pcr_primer_p1>
		<pcr_primer_p2>GAGTTATCACGGAAAATACAGATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGTGTAGAATATGCAGCAGAAACGCTGGAATTCAACTTTCAGAAAACAGATGATTTTTTGGCTTACCGCAGCATGCATGGCTACCCATGACCAATGAATGAAAGAAGACGAGGTGTTTGCCAAGAATGCAACAGATTTACAGATAAGGTATCCGGGAACGAGGTATGGAATATTTTAAATATTTGTTATTGCCAAAAAAACTAAAAGGATCTTTACCATAAACTAAATCTGTATTTTCCGTGATAACTC</canonical_amplicon>
		<polymorphic_amplicon>GTGTGTAGAATATGCAGCAGAAACGCTGGAATTCAACTTTCAGAAAACAGATGATTTTTTGGCTTACCGCAGCATGCATGGCTACCCATGACCAATGAATGAAMGAAGACGAGGTGTTTGCCAAGAATGCAACAGATTTACAGATAAGGTATCCGGGAACGAGGTATGGAATATTTTAAATATTTGTTATTGCCAAAAAAACTAAAAGGATCTTTACCATAAACTAAATCTGTATTTTCCGTGATAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7343</snp_id>
        <super_contig>c003800591.Contig1</super_contig>
        <contig_pos>7044</contig_pos>
        <strand>+</strand>
        <context>TAGATAATGC[C/G]GATTTTTAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAGAGCGATATTCCCGCCTGATATAGCAGACAAATACGGTAGATAATGC</left_flank>
        <right_flank>GATTTTTAATAGTTTTACAGCGAATCCAACAAGAAATGAATAACAATGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAAAAGGTGTCATCAGATTACGTCGTATACATTGGATCCTCTCCACAATACATACTATCCATTTGACTATCCAATCGTCGCCCTGTGATAAAAATCGGAGTCCATAACTGAATACACATCGAAATTAATGAAATGGAAATTAATATTGCACGAGTTCGACAAGAATTATGGGTTTGGAAGCGGAGTGTGTAGAATATGCAGCAGAAACGCTGGAATTCAACTTTCAGAAAACAGATGATTTTTTGGCTTACCGCAGCATGCATGGCTACCCATGACCAATGAATGAAAGAAGACGAGGTGTTTGCCAAGAATGCAACAGATTTACAGATAAGGTATCCGGGAACGAGGTATGGAATATTTTAAATATTTGTTATTGCCAAAAAAACTAAAAGGATCTTTACCATAAACTAAATCTGTATTTTCCGTGATAACTCCGCCAAGCTTCCCAAAAGAGCGATATTCCCGCCTGATATAGCAGACAAATACGGTAGATAATGCGGATTTTTAATAGTTTTACAGCGAATCCAACAAGAAATGAATAACAATGTTGGGAGGGTAAAAAAAGCAATAGAGATAACAGAGTAAAATAAAAGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTTCCCTAGATGTGAAAAAATGAAAAAAAAAATGTTTTCTACAATTGAATTTTTTGTTATAAAACTGATAAGCAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTTTCAGCTGAGTTATGGCAAAAATGCCGACACATGCCTTTTGAGCGTCATAACTTGAGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTTCGAAACTTTTTTGGTGCATATTTGGACACTGAGAATTATGTTACATCTAAAATCAAAGCCAGAAAAATTCTGGAAAAAAGT</canonical>
            <polymorphic>GTAAAAGGTGTCATCAGATTACGTCGTATACATTGGATCCTCTCCACAATACATACTATCCATTTGACTATCCAATCGTCGCCCTGTGATAAAAATCGGAGTCCATAACTGAATACACATCGAAATTAATGAAATGGAAATTAATATTGCACGAGTTCGACAAGAATTATGGGTTTGGAAGCGGAGTGTGTAGAATATGCAGCAGAAACGCTGGAATTCAACTTTCAGAAAACAGATGATTTTTTGGCTTACCGCAGCATGCATGGCTACCCATGACCAATGAATGAAAGAAGACGAGGTGTTTGCCAAGAATGCAACAGATTTACAGATAAGGTATCCGGGAACGAGGTATGGAATATTTTAAATATTTGTTATTGCCAAAAAAACTAAAAGGATCTTTACCATAAACTAAATCTGTATTTTCCGTGATAACTCCGCCAAGCTTCCCAAAAGAGCGATATTCCCGCCTGATATAGCAGACAAATACGGTAGATAATGCSGATTTTTAATAGTTTTACAGCGAATCCAACAAGAAATGAATAACAATGTTGGGAGGGTAAAAAAAGCAATAGAGATAACAGAGTAAAATAAAAGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTTCCCTAGATGTGAAAAAATGAAAAAAAAAATGTTTTCTACAATTGAATTTTTTGTTATAAAACTGATAAGCAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTTTCAGCTGAGTTATGGCAAAAATGCCGACACATGCCTTTTGAGCGTCATAACTTGAGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTTCGAAACTTTTTTGGTGCATATTTGGACACTGAGAATTATGTTACATCTAAAATCAAAGCCAGAAAAATTCTGGAAAAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGCAACAGATTTACAGATAAGG</pcr_primer_p1>
		<pcr_primer_p2>CTCCCAACATTGTTATTCATTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATGCAACAGATTTACAGATAAGGTATCCGGGAACGAGGTATGGAATATTTTAAATATTTGTTATTGCCAAAAAAACTAAAAGGATCTTTACCATAAACTAAATCTGTATTTTCCGTGATAACTCCGCCAAGCTTCCCAAAAGAGCGATATTCCCGCCTGATATAGCAGACAAATACGGTAGATAATGCGGATTTTTAATAGTTTTACAGCGAATCCAACAAGAAATGAATAACAATGTTGGGAG</canonical_amplicon>
		<polymorphic_amplicon>ATGCAACAGATTTACAGATAAGGTATCCGGGAACGAGGTATGGAATATTTTAAATATTTGTTATTGCCAAAAAAACTAAAAGGATCTTTACCATAAACTAAATCTGTATTTTCCGTGATAACTCCGCCAAGCTTCCCAAAAGAGCGATATTCCCGCCTGATATAGCAGACAAATACGGTAGATAATGCSGATTTTTAATAGTTTTACAGCGAATCCAACAAGAAATGAATAACAATGTTGGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7344</snp_id>
        <super_contig>c003800591.Contig1</super_contig>
        <contig_pos>7074</contig_pos>
        <strand>+</strand>
        <context>GCGAATCCAA[C/T]AAGAAATGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAAATACGGTAGATAATGCGGATTTTTAATAGTTTTACAGCGAATCCAA</left_flank>
        <right_flank>AAGAAATGAATAACAATGTTGGGAGGGTAAAAAAAGCAATAGAGATAACA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTGGATCCTCTCCACAATACATACTATCCATTTGACTATCCAATCGTCGCCCTGTGATAAAAATCGGAGTCCATAACTGAATACACATCGAAATTAATGAAATGGAAATTAATATTGCACGAGTTCGACAAGAATTATGGGTTTGGAAGCGGAGTGTGTAGAATATGCAGCAGAAACGCTGGAATTCAACTTTCAGAAAACAGATGATTTTTTGGCTTACCGCAGCATGCATGGCTACCCATGACCAATGAATGAAAGAAGACGAGGTGTTTGCCAAGAATGCAACAGATTTACAGATAAGGTATCCGGGAACGAGGTATGGAATATTTTAAATATTTGTTATTGCCAAAAAAACTAAAAGGATCTTTACCATAAACTAAATCTGTATTTTCCGTGATAACTCCGCCAAGCTTCCCAAAAGAGCGATATTCCCGCCTGATATAGCAGACAAATACGGTAGATAATGCGGATTTTTAATAGTTTTACAGCGAATCCAACAAGAAATGAATAACAATGTTGGGAGGGTAAAAAAAGCAATAGAGATAACAGAGTAAAATAAAAGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTTCCCTAGATGTGAAAAAATGAAAAAAAAAATGTTTTCTACAATTGAATTTTTTGTTATAAAACTGATAAGCAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTTTCAGCTGAGTTATGGCAAAAATGCCGACACATGCCTTTTGAGCGTCATAACTTGAGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTTCGAAACTTTTTTGGTGCATATTTGGACACTGAGAATTATGTTACATCTAAAATCAAAGCCAGAAAAATTCTGGAAAAAAGTTTTTTTTGGATTCACGAACCACTGTTACAT</canonical>
            <polymorphic>CATTGGATCCTCTCCACAATACATACTATCCATTTGACTATCCAATCGTCGCCCTGTGATAAAAATCGGAGTCCATAACTGAATACACATCGAAATTAATGAAATGGAAATTAATATTGCACGAGTTCGACAAGAATTATGGGTTTGGAAGCGGAGTGTGTAGAATATGCAGCAGAAACGCTGGAATTCAACTTTCAGAAAACAGATGATTTTTTGGCTTACCGCAGCATGCATGGCTACCCATGACCAATGAATGAAAGAAGACGAGGTGTTTGCCAAGAATGCAACAGATTTACAGATAAGGTATCCGGGAACGAGGTATGGAATATTTTAAATATTTGTTATTGCCAAAAAAACTAAAAGGATCTTTACCATAAACTAAATCTGTATTTTCCGTGATAACTCCGCCAAGCTTCCCAAAAGAGCGATATTCCCGCCTGATATAGCAGACAAATACGGTAGATAATGCGGATTTTTAATAGTTTTACAGCGAATCCAAYAAGAAATGAATAACAATGTTGGGAGGGTAAAAAAAGCAATAGAGATAACAGAGTAAAATAAAAGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTTCCCTAGATGTGAAAAAATGAAAAAAAAAATGTTTTCTACAATTGAATTTTTTGTTATAAAACTGATAAGCAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTTTCAGCTGAGTTATGGCAAAAATGCCGACACATGCCTTTTGAGCGTCATAACTTGAGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTTCGAAACTTTTTTGGTGCATATTTGGACACTGAGAATTATGTTACATCTAAAATCAAAGCCAGAAAAATTCTGGAAAAAAGTTTTTTTTGGATTCACGAACCACTGTTACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTAAAAGGATCTTTACCATAA</pcr_primer_p1>
		<pcr_primer_p2>CAATATTTATCTTGAAGAATGGACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTAAAAGGATCTTTACCATAAACTAAATCTGTATTTTCCGTGATAACTCCGCCAAGCTTCCCAAAAGAGCGATATTCCCGCCTGATATAGCAGACAAATACGGTAGATAATGCGGATTTTTAATAGTTTTACAGCGAATCCAACAAGAAATGAATAACAATGTTGGGAGGGTAAAAAAAGCAATAGAGATAACAGAGTAAAATAAAAGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATATTG</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTAAAAGGATCTTTACCATAAACTAAATCTGTATTTTCCGTGATAACTCCGCCAAGCTTCCCAAAAGAGCGATATTCCCGCCTGATATAGCAGACAAATACGGTAGATAATGCGGATTTTTAATAGTTTTACAGCGAATCCAAYAAGAAATGAATAACAATGTTGGGAGGGTAAAAAAAGCAATAGAGATAACAGAGTAAAATAAAAGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7345</snp_id>
        <super_contig>c003800591.Contig1</super_contig>
        <contig_pos>7123</contig_pos>
        <strand>+</strand>
        <context>ATAGAGATAA[A/C]AGAGTAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACAAGAAATGAATAACAATGTTGGGAGGGTAAAAAAAGCAATAGAGATAA</left_flank>
        <right_flank>AGAGTAAAATAAAAGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCCCTGTGATAAAAATCGGAGTCCATAACTGAATACACATCGAAATTAATGAAATGGAAATTAATATTGCACGAGTTCGACAAGAATTATGGGTTTGGAAGCGGAGTGTGTAGAATATGCAGCAGAAACGCTGGAATTCAACTTTCAGAAAACAGATGATTTTTTGGCTTACCGCAGCATGCATGGCTACCCATGACCAATGAATGAAAGAAGACGAGGTGTTTGCCAAGAATGCAACAGATTTACAGATAAGGTATCCGGGAACGAGGTATGGAATATTTTAAATATTTGTTATTGCCAAAAAAACTAAAAGGATCTTTACCATAAACTAAATCTGTATTTTCCGTGATAACTCCGCCAAGCTTCCCAAAAGAGCGATATTCCCGCCTGATATAGCAGACAAATACGGTAGATAATGCGGATTTTTAATAGTTTTACAGCGAATCCAACAAGAAATGAATAACAATGTTGGGAGGGTAAAAAAAGCAATAGAGATAACAGAGTAAAATAAAAGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTTCCCTAGATGTGAAAAAATGAAAAAAAAAATGTTTTCTACAATTGAATTTTTTGTTATAAAACTGATAAGCAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTTTCAGCTGAGTTATGGCAAAAATGCCGACACATGCCTTTTGAGCGTCATAACTTGAGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTTCGAAACTTTTTTGGTGCATATTTGGACACTGAGAATTATGTTACATCTAAAATCAAAGCCAGAAAAATTCTGGAAAAAAGTTTTTTTTGGATTCACGAACCACTGTTACATCTGAAACTGCTCTGAAAATTCCGACAATGAGAAATTTTCAAAAAACCGA</canonical>
            <polymorphic>CGCCCTGTGATAAAAATCGGAGTCCATAACTGAATACACATCGAAATTAATGAAATGGAAATTAATATTGCACGAGTTCGACAAGAATTATGGGTTTGGAAGCGGAGTGTGTAGAATATGCAGCAGAAACGCTGGAATTCAACTTTCAGAAAACAGATGATTTTTTGGCTTACCGCAGCATGCATGGCTACCCATGACCAATGAATGAAAGAAGACGAGGTGTTTGCCAAGAATGCAACAGATTTACAGATAAGGTATCCGGGAACGAGGTATGGAATATTTTAAATATTTGTTATTGCCAAAAAAACTAAAAGGATCTTTACCATAAACTAAATCTGTATTTTCCGTGATAACTCCGCCAAGCTTCCCAAAAGAGCGATATTCCCGCCTGATATAGCAGACAAATACGGTAGATAATGCGGATTTTTAATAGTTTTACAGCGAATCCAACAAGAAATGAATAACAATGTTGGGAGGGTAAAAAAAGCAATAGAGATAAMAGAGTAAAATAAAAGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTTCCCTAGATGTGAAAAAATGAAAAAAAAAATGTTTTCTACAATTGAATTTTTTGTTATAAAACTGATAAGCAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTTTCAGCTGAGTTATGGCAAAAATGCCGACACATGCCTTTTGAGCGTCATAACTTGAGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTTCGAAACTTTTTTGGTGCATATTTGGACACTGAGAATTATGTTACATCTAAAATCAAAGCCAGAAAAATTCTGGAAAAAAGTTTTTTTTGGATTCACGAACCACTGTTACATCTGAAACTGCTCTGAAAATTCCGACAATGAGAAATTTTCAAAAAACCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTAATAGTTTTACAGCGAATC</pcr_primer_p1>
		<pcr_primer_p2>AGAAGTGGTGAGGAGAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>686</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTAATAGTTTTACAGCGAATCCAACAAGAAATGAATAACAATGTTGGGAGGGTAAAAAAAGCAATAGAGATAACAGAGTAAAATAAAAGGCGAGA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTAATAGTTTTACAGCGAATCCAACAAGAAATGAATAACAATGTTGGGAGGGTAAAAAAAGCAATAGAGATAAMAGAGTAAAATAAAAGGCGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7346</snp_id>
        <super_contig>c003800591.Contig1</super_contig>
        <contig_pos>7178</contig_pos>
        <strand>+</strand>
        <context>AAATATTGCT[C/T]TTCGGTAARC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAATAAAAGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATATTGCT</left_flank>
        <right_flank>TTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAAATTAATATTGCACGAGTTCGACAAGAATTATGGGTTTGGAAGCGGAGTGTGTAGAATATGCAGCAGAAACGCTGGAATTCAACTTTCAGAAAACAGATGATTTTTTGGCTTACCGCAGCATGCATGGCTACCCATGACCAATGAATGAAAGAAGACGAGGTGTTTGCCAAGAATGCAACAGATTTACAGATAAGGTATCCGGGAACGAGGTATGGAATATTTTAAATATTTGTTATTGCCAAAAAAACTAAAAGGATCTTTACCATAAACTAAATCTGTATTTTCCGTGATAACTCCGCCAAGCTTCCCAAAAGAGCGATATTCCCGCCTGATATAGCAGACAAATACGGTAGATAATGCGGATTTTTAATAGTTTTACAGCGAATCCAACAAGAAATGAATAACAATGTTGGGAGGGTAAAAAAAGCAATAGAGATAACAGAGTAAAATAAAAGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTTCCCTAGATGTGAAAAAATGAAAAAAAAAATGTTTTCTACAATTGAATTTTTTGTTATAAAACTGATAAGCAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTTTCAGCTGAGTTATGGCAAAAATGCCGACACATGCCTTTTGAGCGTCATAACTTGAGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTTCGAAACTTTTTTGGTGCATATTTGGACACTGAGAATTATGTTACATCTAAAATCAAAGCCAGAAAAATTCTGGAAAAAAGTTTTTTTTGGATTCACGAACCACTGTTACATCTGAAACTGCTCTGAAAATTCCGACAATGAGAAATTTTCAAAAAACCGATTTTATATGTTTTTGGATTTTACAGCTACTCTCATGCAAAATTTCAAGTCGATTG</canonical>
            <polymorphic>TGGAAATTAATATTGCACGAGTTCGACAAGAATTATGGGTTTGGAAGCGGAGTGTGTAGAATATGCAGCAGAAACGCTGGAATTCAACTTTCAGAAAACAGATGATTTTTTGGCTTACCGCAGCATGCATGGCTACCCATGACCAATGAATGAAAGAAGACGAGGTGTTTGCCAAGAATGCAACAGATTTACAGATAAGGTATCCGGGAACGAGGTATGGAATATTTTAAATATTTGTTATTGCCAAAAAAACTAAAAGGATCTTTACCATAAACTAAATCTGTATTTTCCGTGATAACTCCGCCAAGCTTCCCAAAAGAGCGATATTCCCGCCTGATATAGCAGACAAATACGGTAGATAATGCGGATTTTTAATAGTTTTACAGCGAATCCAACAAGAAATGAATAACAATGTTGGGAGGGTAAAAAAAGCAATAGAGATAACAGAGTAAAATAAAAGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATATTGCTYTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTTCCCTAGATGTGAAAAAATGAAAAAAAAAATGTTTTCTACAATTGAATTTTTTGTTATAAAACTGATAAGCAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTTTCAGCTGAGTTATGGCAAAAATGCCGACACATGCCTTTTGAGCGTCATAACTTGAGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTTCGAAACTTTTTTGGTGCATATTTGGACACTGAGAATTATGTTACATCTAAAATCAAAGCCAGAAAAATTCTGGAAAAAAGTTTTTTTTGGATTCACGAACCACTGTTACATCTGAAACTGCTCTGAAAATTCCGACAATGAGAAATTTTCAAAAAACCGATTTTATATGTTTTTGGATTTTACAGCTACTCTCATGCAAAATTTCAAGTCGATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAAAATAAAAGGCGAGAGCTA</pcr_primer_p1>
		<pcr_primer_p2>AGAAGTGGTGAGGAGAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>605</pcr_amplicon_size>
		<canonical_amplicon>GTAAAATAAAAGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAA</canonical_amplicon>
		<polymorphic_amplicon>GTAAAATAAAAGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATATTGCTYTTCGGTAAGCATTGTAACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7347</snp_id>
        <super_contig>c003800591.Contig1</super_contig>
        <contig_pos>9036</contig_pos>
        <strand>+</strand>
        <context>AGAAAGAAAY[C/T]TTTGTTTTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAACGGGCGGGAATTCAAAAATTAAGTTTTTTGCCAAATAAGAAAGAAAT</left_flank>
        <right_flank>TTTGTTTTAATTGAATTTTTTCGAGAATTGGAGACAGAATAGGGGAGTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTCAAGCTTCTCTCCAACTCGCTGGTATTAGACTGGCGGCAAGTGGCAGTTCTGAAAATATTCAGGACTACATTCACTTTTTTGATTCTGAAAAATGTTAATTTCTATTGTTTCATTCAACAAAGACAACGGCAAATCAGAAGACGAATGAGGTCAATGTGGATATCGAAGAGAATGGCCTATTACATAAACGGGTGCTTCTTAACGAATAGGGGGGCATATCTGGACAAAAGAAAAACAAGAGGTAGTTTCGGACATGTGAAAAAATGCGTGTTGGGTAAAATAGTATGAAAAAATGCAAGATTGAAAAAAAACAGTTATAAGGGCACTTTGGGAAAATTGGCTGGAAGCGAAAAGAAACGGAGCATTTTTAATACTGATATACAGATAAAGGAGGCATAGGAAATTGAAAAAAAAACGGATTTTTCAAATTTTTTTTTTGAAAGACAACGGGCGGGAATTCAAAAATTAAGTTTTTTGCCAAATAAGAAAGAAATTTTTGTTTTAATTGAATTTTTTCGAGAATTGGAGACAGAATAGGGGAGTGAAGCTTACAGAGGATAATTCGAGGGGTAGTTAAGAACAATTATTACTCTTGTCCGAAATCAATGCACGTTGTGGCCTAGAAAACAACGGTATTGCACGCGCCTTTAATACAGTACCTCAACATTTATCGAATTTTCTCAAATTTCTCTCATTTTTTCGCTTGTTTCTGTCTAATTTTGCGTAATTCTTATGAATCTTTAATTTGTTTTTCTTATAAAATAGAAAAAAAACAGCCAAATAGGGCCCAAAATAAAAAGCGTCCGAGGTACGGTATTTAAAGGCGCATGCATCAATTTGTGTTTTCTCGCTGTGCGACCGACGATGCGATTTTGAGTAAATTTTCGGCCGCAACGTACATTGATTTCGGACGAGAGTAATAAATTGTTATATTTTGGTGAAATTCGTCTCGAAGTTTCCCCATTTCTTGTTTTTTCTCTCCTCTCTTCATTTCA</canonical>
            <polymorphic>CTTTCAAGCTTCTCTCCAACTCGCTGGTATTAGACTGGCGGCAAGTGGCAGTTCTGAAAATATTCAGGACTACATTCACTTTTTTGATTCTGAAAAATGTTAATTTCTATTGTTTCATTCAACAAAGACAACGGCAAATCAGAAGACGAATGAGGTCAATGTGGATATCGAAGAGAATGGCCTATTACATAAACGGGTGCTTCTTAACGAATAGGGGGGCATATCTGGACAAAAGAAAAACAAGAGGTAGTTTCGGACATGTGAAAAAATGCGTGTTGGGTAAAATAGTATGAAAAAATGCAAGATTGAAAAAAAACAGTTATAAGGGCACTTTGGGAAAATTGGCTGGAAGCGAAAAGAAACGGAGCATTTTTAATACTGATATACAGATAAAGGAGGCATAGGAAATTGAAAAAAAAACGGATTTTTCAAATTTTTTTTTTGAAAGACAACGGGCGGGAATTCAAAAATTAAGTTTTTTGCCAAATAAGAAAGAAATYTTTGTTTTAATTGAATTTTTTCGAGAATTGGAGACAGAATAGGGGAGTGAAGCTTACAGAGGATAATTCGAGGGGTAGTTAAGAACAATTATTACTCTTGTCCGAAATCAATGCACGTTGTGGCCTAGAAAACAACGGTATTGCACGCGCCTTTAATACAGTACCTCAACATTTATCGAATTTTCTCAAATTTCTCTCATTTTTTCGCTTGTTTCTGTCTAATTTTGCGTAATTCTTATGAATCTTTAATTTGTTTTTCTTATAAAATAGAAAAAAAACAGCCAAATAGGGCCCAAAATAAAAAGCGTCCGAGGTACGGTATTTAAAGGCGCATGCATCAATTTGTGTTTTCTCGCTGTGCGACCGACGATGCGATTTTGAGTAAATTTTCGGCCGCAACGTACATTGATTTCGGACGAGAGTAATAAATTGTTATATTTTGGTGAAATTCGTCTCGAAGTTTCCCCATTTCTTGTTTTTTCTCTCCTCTCTTCATTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>431 196 165 62 54 36 29 17 10</canonical_bands>
                <polymorphic_bands>431 196 165 62 54 53 29 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>238 101 92 92 67 54 45 43 39 32 29 28 25 22 19 17 12 12 10 10 8 5</canonical_bands>
                <polymorphic_bands>238 101 92 92 67 54 45 43 40 39 32 29 25 22 19 17 12 10 10 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAAACGGAGCATTTTTAATAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTCGGACAAGAGTAATAATTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAGAAACGGAGCATTTTTAATACTGATATACAGATAAAGGAGGCATAGGAAATTGAAAAAAAAACGGATTTTTCAAATTTTTTTTTTGAAAGACAACGGGCGGGAATTCAAAAATTAAGTTTTTTGCCAAATAAGAAAGAAATTTTTGTTTTAATTGAATTTTTTCGAGAATTGGAGACAGAATAGGGGAGTGAAGCTTACAGAGGATAATTCGAGGGGTAGTTAAGAACAATTATTACTCTTGTCCGAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAGAAACGGAGCATTTTTAATACTGATATACAGATAAAGGAGGCATAGGAAATTGAAAAAAAAACGGATTTTTCAAATTTTTTTTTTGAAAGACAACGGGCGGGAATTCAAAAATTAAGTTTTTTGCCAAATAAGAAAGAAATYTTTGTTTTAATTGAATTTTTTCGAGAATTGGAGACAGAATAGGGGAGTGAAGCTTACAGAGGATAATTCGAGGGGTAGTTAAGAACAATTATTACTCTTGTCCGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7348</snp_id>
        <super_contig>c003800591.Contig1</super_contig>
        <contig_pos>9035</contig_pos>
        <strand>+</strand>
        <context>AAGAAAGAAA[C/T]YTTTGTTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAACGGGCGGGAATTCAAAAATTAAGTTTTTTGCCAAATAAGAAAGAAA</left_flank>
        <right_flank>TTTTGTTTTAATTGAATTTTTTCGAGAATTGGAGACAGAATAGGGGAGTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTTTCAAGCTTCTCTCCAACTCGCTGGTATTAGACTGGCGGCAAGTGGCAGTTCTGAAAATATTCAGGACTACATTCACTTTTTTGATTCTGAAAAATGTTAATTTCTATTGTTTCATTCAACAAAGACAACGGCAAATCAGAAGACGAATGAGGTCAATGTGGATATCGAAGAGAATGGCCTATTACATAAACGGGTGCTTCTTAACGAATAGGGGGGCATATCTGGACAAAAGAAAAACAAGAGGTAGTTTCGGACATGTGAAAAAATGCGTGTTGGGTAAAATAGTATGAAAAAATGCAAGATTGAAAAAAAACAGTTATAAGGGCACTTTGGGAAAATTGGCTGGAAGCGAAAAGAAACGGAGCATTTTTAATACTGATATACAGATAAAGGAGGCATAGGAAATTGAAAAAAAAACGGATTTTTCAAATTTTTTTTTTGAAAGACAACGGGCGGGAATTCAAAAATTAAGTTTTTTGCCAAATAAGAAAGAAATTTTTGTTTTAATTGAATTTTTTCGAGAATTGGAGACAGAATAGGGGAGTGAAGCTTACAGAGGATAATTCGAGGGGTAGTTAAGAACAATTATTACTCTTGTCCGAAATCAATGCACGTTGTGGCCTAGAAAACAACGGTATTGCACGCGCCTTTAATACAGTACCTCAACATTTATCGAATTTTCTCAAATTTCTCTCATTTTTTCGCTTGTTTCTGTCTAATTTTGCGTAATTCTTATGAATCTTTAATTTGTTTTTCTTATAAAATAGAAAAAAAACAGCCAAATAGGGCCCAAAATAAAAAGCGTCCGAGGTACGGTATTTAAAGGCGCATGCATCAATTTGTGTTTTCTCGCTGTGCGACCGACGATGCGATTTTGAGTAAATTTTCGGCCGCAACGTACATTGATTTCGGACGAGAGTAATAAATTGTTATATTTTGGTGAAATTCGTCTCGAAGTTTCCCCATTTCTTGTTTTTTCTCTCCTCTCTTCATTTC</canonical>
            <polymorphic>GCTTTCAAGCTTCTCTCCAACTCGCTGGTATTAGACTGGCGGCAAGTGGCAGTTCTGAAAATATTCAGGACTACATTCACTTTTTTGATTCTGAAAAATGTTAATTTCTATTGTTTCATTCAACAAAGACAACGGCAAATCAGAAGACGAATGAGGTCAATGTGGATATCGAAGAGAATGGCCTATTACATAAACGGGTGCTTCTTAACGAATAGGGGGGCATATCTGGACAAAAGAAAAACAAGAGGTAGTTTCGGACATGTGAAAAAATGCGTGTTGGGTAAAATAGTATGAAAAAATGCAAGATTGAAAAAAAACAGTTATAAGGGCACTTTGGGAAAATTGGCTGGAAGCGAAAAGAAACGGAGCATTTTTAATACTGATATACAGATAAAGGAGGCATAGGAAATTGAAAAAAAAACGGATTTTTCAAATTTTTTTTTTGAAAGACAACGGGCGGGAATTCAAAAATTAAGTTTTTTGCCAAATAAGAAAGAAAYTTTTGTTTTAATTGAATTTTTTCGAGAATTGGAGACAGAATAGGGGAGTGAAGCTTACAGAGGATAATTCGAGGGGTAGTTAAGAACAATTATTACTCTTGTCCGAAATCAATGCACGTTGTGGCCTAGAAAACAACGGTATTGCACGCGCCTTTAATACAGTACCTCAACATTTATCGAATTTTCTCAAATTTCTCTCATTTTTTCGCTTGTTTCTGTCTAATTTTGCGTAATTCTTATGAATCTTTAATTTGTTTTTCTTATAAAATAGAAAAAAAACAGCCAAATAGGGCCCAAAATAAAAAGCGTCCGAGGTACGGTATTTAAAGGCGCATGCATCAATTTGTGTTTTCTCGCTGTGCGACCGACGATGCGATTTTGAGTAAATTTTCGGCCGCAACGTACATTGATTTCGGACGAGAGTAATAAATTGTTATATTTTGGTGAAATTCGTCTCGAAGTTTCCCCATTTCTTGTTTTTTCTCTCCTCTCTTCATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>432 196 165 62 53 36 29 17 10</canonical_bands>
                <polymorphic_bands>432 196 165 62 53 53 29 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>238 102 92 92 67 53 45 43 39 32 29 28 25 22 19 17 12 12 10 10 8 5</canonical_bands>
                <polymorphic_bands>238 102 92 92 67 53 45 43 40 39 32 29 25 22 19 17 12 10 10 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAAACGGAGCATTTTTAATAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTCGGACAAGAGTAATAATTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAGAAACGGAGCATTTTTAATACTGATATACAGATAAAGGAGGCATAGGAAATTGAAAAAAAAACGGATTTTTCAAATTTTTTTTTTGAAAGACAACGGGCGGGAATTCAAAAATTAAGTTTTTTGCCAAATAAGAAAGAAATTTTTGTTTTAATTGAATTTTTTCGAGAATTGGAGACAGAATAGGGGAGTGAAGCTTACAGAGGATAATTCGAGGGGTAGTTAAGAACAATTATTACTCTTGTCCGAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAGAAACGGAGCATTTTTAATACTGATATACAGATAAAGGAGGCATAGGAAATTGAAAAAAAAACGGATTTTTCAAATTTTTTTTTTGAAAGACAACGGGCGGGAATTCAAAAATTAAGTTTTTTGCCAAATAAGAAAGAAAYTTTTGTTTTAATTGAATTTTTTCGAGAATTGGAGACAGAATAGGGGAGTGAAGCTTACAGAGGATAATTCGAGGGGTAGTTAAGAACAATTATTACTCTTGTCCGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7349</snp_id>
        <super_contig>c003800591.Contig1</super_contig>
        <contig_pos>8760</contig_pos>
        <strand>+</strand>
        <context>GGGGGGCATA[G/T]CTGGACAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGAATGGCCTATTACATAAACGGGTGCTTCTTAACGAATAGGGGGGCATA</left_flank>
        <right_flank>CTGGACAAAAGAAAAACAAGAGGTAGTTTCGGACATGTGAAAAAATGCGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGCGGGTTTGATCTAGATCATGATCTATTTCTTCAAAATCAACTGGTTGCAAGGCGCGCTTTTTCGTTCTTCATTTAAAACTGTGAAACTCTGCCAACGAAATTCGGCAGCGAATTTAGTATTTTTCCTAAATTTACTGGGGCGCGCTTTCTGACCCCCTCGCTTGAACCCATGTGCTGACGGAATTGTTCTCTAGAAAAAAAACGGAAGGAAAAAGAAAACAAGAATAAGATGAATATAAAAATATGCATCTTTATGAATTTATTAAAAGATTGCTTTCAAGCTTCTCTCCAACTCGCTGGTATTAGACTGGCGGCAAGTGGCAGTTCTGAAAATATTCAGGACTACATTCACTTTTTTGATTCTGAAAAATGTTAATTTCTATTGTTTCATTCAACAAAGACAACGGCAAATCAGAAGACGAATGAGGTCAATGTGGATATCGAAGAGAATGGCCTATTACATAAACGGGTGCTTCTTAACGAATAGGGGGGCATATCTGGACAAAAGAAAAACAAGAGGTAGTTTCGGACATGTGAAAAAATGCGTGTTGGGTAAAATAGTATGAAAAAATGCAAGATTGAAAAAAAACAGTTATAAGGGCACTTTGGGAAAATTGGCTGGAAGCGAAAAGAAACGGAGCATTTTTAATACTGATATACAGATAAAGGAGGCATAGGAAATTGAAAAAAAAACGGATTTTTCAAATTTTTTTTTTGAAAGACAACGGGCGGGAATTCAAAAATTAAGTTTTTTGCCAAATAAGAAAGAAATTTTTGTTTTAATTGAATTTTTTCGAGAATTGGAGACAGAATAGGGGAGTGAAGCTTACAGAGGATAATTCGAGGGGTAGTTAAGAACAATTATTACTCTTGTCCGAAATCAATGCACGTTGTGGCCTAGAAAACAACGGTATTGCACGCGCCTTTAATACAGTACCTCAACATTTATCGAATTTTCTCAAATTTCTCTCATTTTTTCGCTTGTTTCTGTCTAATT</canonical>
            <polymorphic>ACGCGGGTTTGATCTAGATCATGATCTATTTCTTCAAAATCAACTGGTTGCAAGGCGCGCTTTTTCGTTCTTCATTTAAAACTGTGAAACTCTGCCAACGAAATTCGGCAGCGAATTTAGTATTTTTCCTAAATTTACTGGGGCGCGCTTTCTGACCCCCTCGCTTGAACCCATGTGCTGACGGAATTGTTCTCTAGAAAAAAAACGGAAGGAAAAAGAAAACAAGAATAAGATGAATATAAAAATATGCATCTTTATGAATTTATTAAAAGATTGCTTTCAAGCTTCTCTCCAACTCGCTGGTATTAGACTGGCGGCAAGTGGCAGTTCTGAAAATATTCAGGACTACATTCACTTTTTTGATTCTGAAAAATGTTAATTTCTATTGTTTCATTCAACAAAGACAACGGCAAATCAGAAGACGAATGAGGTCAATGTGGATATCGAAGAGAATGGCCTATTACATAAACGGGTGCTTCTTAACGAATAGGGGGGCATAKCTGGACAAAAGAAAAACAAGAGGTAGTTTCGGACATGTGAAAAAATGCGTGTTGGGTAAAATAGTATGAAAAAATGCAAGATTGAAAAAAAACAGTTATAAGGGCACTTTGGGAAAATTGGCTGGAAGCGAAAAGAAACGGAGCATTTTTAATACTGATATACAGATAAAGGAGGCATAGGAAATTGAAAAAAAAACGGATTTTTCAAATTTTTTTTTTGAAAGACAACGGGCGGGAATTCAAAAATTAAGTTTTTTGCCAAATAAGAAAGAAATTTTTGTTTTAATTGAATTTTTTCGAGAATTGGAGACAGAATAGGGGAGTGAAGCTTACAGAGGATAATTCGAGGGGTAGTTAAGAACAATTATTACTCTTGTCCGAAATCAATGCACGTTGTGGCCTAGAAAACAACGGTATTGCACGCGCCTTTAATACAGTACCTCAACATTTATCGAATTTTCTCAAATTTCTCTCATTTTTTCGCTTGTTTCTGTCTAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>297 202 174 160 147 14 6</canonical_bands>
                <polymorphic_bands>457 202 174 147 14 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATGTGGATATCGAAGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TCCTATGCCTCCTTTATCTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAATGTGGATATCGAAGAGAATGGCCTATTACATAAACGGGTGCTTCTTAACGAATAGGGGGGCATATCTGGACAAAAGAAAAACAAGAGGTAGTTTCGGACATGTGAAAAAATGCGTGTTGGGTAAAATAGTATGAAAAAATGCAAGATTGAAAAAAAACAGTTATAAGGGCACTTTGGGAAAATTGGCTGGAAGCGAAAAGAAACGGAGCATTTTTAATACTGATATACAGATAAAGGAGGCATAGGA</canonical_amplicon>
		<polymorphic_amplicon>CAATGTGGATATCGAAGAGAATGGCCTATTACATAAACGGGTGCTTCTTAACGAATAGGGGGGCATAKCTGGACAAAAGAAAAACAAGAGGTAGTTTCGGACATGTGAAAAAATGCGTGTTGGGTAAAATAGTATGAAAAAATGCAAGATTGAAAAAAAACAGTTATAAGGGCACTTTGGGAAAATTGGCTGGAAGCGAAAAGAAACGGAGCATTTTTAATACTGATATACAGATAAAGGAGGCATAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7350</snp_id>
        <super_contig>c003800591.Contig1</super_contig>
        <contig_pos>8638</contig_pos>
        <strand>+</strand>
        <context>GAAAAATGTT[A/C]ATTTCTATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCTGAAAATATTCAGGACTACATTCACTTTTTTGATTCTGAAAAATGTT</left_flank>
        <right_flank>ATTTCTATTGTTTCATTCAACAAAGACAACGGCAAATCAGAAGACGAATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAATCCAAAAACTTTATGGAAAACCAATTTTGGTCTGACGCACTTGGGTTCAAGCGAGGGGGTCAGAAAGCGCGCCCCAGCAAACTCGTAGGCCAGAAGAGATTTAATAAATTTAAAGTGGACGCGGGTTTGATCTAGATCATGATCTATTTCTTCAAAATCAACTGGTTGCAAGGCGCGCTTTTTCGTTCTTCATTTAAAACTGTGAAACTCTGCCAACGAAATTCGGCAGCGAATTTAGTATTTTTCCTAAATTTACTGGGGCGCGCTTTCTGACCCCCTCGCTTGAACCCATGTGCTGACGGAATTGTTCTCTAGAAAAAAAACGGAAGGAAAAAGAAAACAAGAATAAGATGAATATAAAAATATGCATCTTTATGAATTTATTAAAAGATTGCTTTCAAGCTTCTCTCCAACTCGCTGGTATTAGACTGGCGGCAAGTGGCAGTTCTGAAAATATTCAGGACTACATTCACTTTTTTGATTCTGAAAAATGTTAATTTCTATTGTTTCATTCAACAAAGACAACGGCAAATCAGAAGACGAATGAGGTCAATGTGGATATCGAAGAGAATGGCCTATTACATAAACGGGTGCTTCTTAACGAATAGGGGGGCATATCTGGACAAAAGAAAAACAAGAGGTAGTTTCGGACATGTGAAAAAATGCGTGTTGGGTAAAATAGTATGAAAAAATGCAAGATTGAAAAAAAACAGTTATAAGGGCACTTTGGGAAAATTGGCTGGAAGCGAAAAGAAACGGAGCATTTTTAATACTGATATACAGATAAAGGAGGCATAGGAAATTGAAAAAAAAACGGATTTTTCAAATTTTTTTTTTGAAAGACAACGGGCGGGAATTCAAAAATTAAGTTTTTTGCCAAATAAGAAAGAAATTTTTGTTTTAATTGAATTTTTTCGAGAATTGGAGACAGAATAGGGGAGTGAAGCTTACAGAGGATAATTCGAGGGGTAGTTAAGAACAATTATTACTCTTGTC</canonical>
            <polymorphic>CAAATCCAAAAACTTTATGGAAAACCAATTTTGGTCTGACGCACTTGGGTTCAAGCGAGGGGGTCAGAAAGCGCGCCCCAGCAAACTCGTAGGCCAGAAGAGATTTAATAAATTTAAAGTGGACGCGGGTTTGATCTAGATCATGATCTATTTCTTCAAAATCAACTGGTTGCAAGGCGCGCTTTTTCGTTCTTCATTTAAAACTGTGAAACTCTGCCAACGAAATTCGGCAGCGAATTTAGTATTTTTCCTAAATTTACTGGGGCGCGCTTTCTGACCCCCTCGCTTGAACCCATGTGCTGACGGAATTGTTCTCTAGAAAAAAAACGGAAGGAAAAAGAAAACAAGAATAAGATGAATATAAAAATATGCATCTTTATGAATTTATTAAAAGATTGCTTTCAAGCTTCTCTCCAACTCGCTGGTATTAGACTGGCGGCAAGTGGCAGTTCTGAAAATATTCAGGACTACATTCACTTTTTTGATTCTGAAAAATGTTMATTTCTATTGTTTCATTCAACAAAGACAACGGCAAATCAGAAGACGAATGAGGTCAATGTGGATATCGAAGAGAATGGCCTATTACATAAACGGGTGCTTCTTAACGAATAGGGGGGCATATCTGGACAAAAGAAAAACAAGAGGTAGTTTCGGACATGTGAAAAAATGCGTGTTGGGTAAAATAGTATGAAAAAATGCAAGATTGAAAAAAAACAGTTATAAGGGCACTTTGGGAAAATTGGCTGGAAGCGAAAAGAAACGGAGCATTTTTAATACTGATATACAGATAAAGGAGGCATAGGAAATTGAAAAAAAAACGGATTTTTCAAATTTTTTTTTTGAAAGACAACGGGCGGGAATTCAAAAATTAAGTTTTTTGCCAAATAAGAAAGAAATTTTTGTTTTAATTGAATTTTTTCGAGAATTGGAGACAGAATAGGGGAGTGAAGCTTACAGAGGATAATTCGAGGGGTAGTTAAGAACAATTATTACTCTTGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>190 169 110 105 104 98 84 72 36 23 9</canonical_bands>
                <polymorphic_bands>214 190 169 105 98 84 72 36 23 9</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>238 118 113 84 75 67 53 39 29 28 26 25 22 18 16 12 12 12 8 5</canonical_bands>
                <polymorphic_bands>356 113 84 75 67 53 39 29 28 26 25 22 18 16 12 12 12 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGGAAAAAGAAAACAAGAATAA</pcr_primer_p1>
		<pcr_primer_p2>CATTCTCTTCGATATCCACATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAGGAAAAAGAAAACAAGAATAAGATGAATATAAAAATATGCATCTTTATGAATTTATTAAAAGATTGCTTTCAAGCTTCTCTCCAACTCGCTGGTATTAGACTGGCGGCAAGTGGCAGTTCTGAAAATATTCAGGACTACATTCACTTTTTTGATTCTGAAAAATGTTAATTTCTATTGTTTCATTCAACAAAGACAACGGCAAATCAGAAGACGAATGAGGTCAATGTGGATATCGAAGAGAATG</canonical_amplicon>
		<polymorphic_amplicon>GAAGGAAAAAGAAAACAAGAATAAGATGAATATAAAAATATGCATCTTTATGAATTTATTAAAAGATTGCTTTCAAGCTTCTCTCCAACTCGCTGGTATTAGACTGGCGGCAAGTGGCAGTTCTGAAAATATTCAGGACTACATTCACTTTTTTGATTCTGAAAAATGTTMATTTCTATTGTTTCATTCAACAAAGACAACGGCAAATCAGAAGACGAATGAGGTCAATGTGGATATCGAAGAGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7351</snp_id>
        <super_contig>c003800591.Contig1</super_contig>
        <contig_pos>8532</contig_pos>
        <strand>+</strand>
        <context>TTTATTAAAA[A/G]ATTGCTTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAAGAATAAGATGAATATAAAAATATGCATCTTTATGAATTTATTAAAA</left_flank>
        <right_flank>ATTGCTTTCAAGCTTCTCTCCAACTCGCTGGTATTAGACTGGCGGCAAGT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTAATTTGTTTCTAACCTACTGTGCAATCTCGTAGCGCCGCTGCTCACTTTTTTTGACGCTGATTGTTAATTGTAAAATTGTCAAATTGTGTGTTTCAGACCTGCCAAATCCAAAAACTTTATGGAAAACCAATTTTGGTCTGACGCACTTGGGTTCAAGCGAGGGGGTCAGAAAGCGCGCCCCAGCAAACTCGTAGGCCAGAAGAGATTTAATAAATTTAAAGTGGACGCGGGTTTGATCTAGATCATGATCTATTTCTTCAAAATCAACTGGTTGCAAGGCGCGCTTTTTCGTTCTTCATTTAAAACTGTGAAACTCTGCCAACGAAATTCGGCAGCGAATTTAGTATTTTTCCTAAATTTACTGGGGCGCGCTTTCTGACCCCCTCGCTTGAACCCATGTGCTGACGGAATTGTTCTCTAGAAAAAAAACGGAAGGAAAAAGAAAACAAGAATAAGATGAATATAAAAATATGCATCTTTATGAATTTATTAAAAGATTGCTTTCAAGCTTCTCTCCAACTCGCTGGTATTAGACTGGCGGCAAGTGGCAGTTCTGAAAATATTCAGGACTACATTCACTTTTTTGATTCTGAAAAATGTTAATTTCTATTGTTTCATTCAACAAAGACAACGGCAAATCAGAAGACGAATGAGGTCAATGTGGATATCGAAGAGAATGGCCTATTACATAAACGGGTGCTTCTTAACGAATAGGGGGGCATATCTGGACAAAAGAAAAACAAGAGGTAGTTTCGGACATGTGAAAAAATGCGTGTTGGGTAAAATAGTATGAAAAAATGCAAGATTGAAAAAAAACAGTTATAAGGGCACTTTGGGAAAATTGGCTGGAAGCGAAAAGAAACGGAGCATTTTTAATACTGATATACAGATAAAGGAGGCATAGGAAATTGAAAAAAAAACGGATTTTTCAAATTTTTTTTTTGAAAGACAACGGGCGGGAATTCAAAAATTAAGTTTTTTGCCAAATAAGAAAGA</canonical>
            <polymorphic>ACTAATTTGTTTCTAACCTACTGTGCAATCTCGTAGCGCCGCTGCTCACTTTTTTTGACGCTGATTGTTAATTGTAAAATTGTCAAATTGTGTGTTTCAGACCTGCCAAATCCAAAAACTTTATGGAAAACCAATTTTGGTCTGACGCACTTGGGTTCAAGCGAGGGGGTCAGAAAGCGCGCCCCAGCAAACTCGTAGGCCAGAAGAGATTTAATAAATTTAAAGTGGACGCGGGTTTGATCTAGATCATGATCTATTTCTTCAAAATCAACTGGTTGCAAGGCGCGCTTTTTCGTTCTTCATTTAAAACTGTGAAACTCTGCCAACGAAATTCGGCAGCGAATTTAGTATTTTTCCTAAATTTACTGGGGCGCGCTTTCTGACCCCCTCGCTTGAACCCATGTGCTGACGGAATTGTTCTCTAGAAAAAAAACGGAAGGAAAAAGAAAACAAGAATAAGATGAATATAAAAATATGCATCTTTATGAATTTATTAAAARATTGCTTTCAAGCTTCTCTCCAACTCGCTGGTATTAGACTGGCGGCAAGTGGCAGTTCTGAAAATATTCAGGACTACATTCACTTTTTTGATTCTGAAAAATGTTAATTTCTATTGTTTCATTCAACAAAGACAACGGCAAATCAGAAGACGAATGAGGTCAATGTGGATATCGAAGAGAATGGCCTATTACATAAACGGGTGCTTCTTAACGAATAGGGGGGCATATCTGGACAAAAGAAAAACAAGAGGTAGTTTCGGACATGTGAAAAAATGCGTGTTGGGTAAAATAGTATGAAAAAATGCAAGATTGAAAAAAAACAGTTATAAGGGCACTTTGGGAAAATTGGCTGGAAGCGAAAAGAAACGGAGCATTTTTAATACTGATATACAGATAAAGGAGGCATAGGAAATTGAAAAAAAAACGGATTTTTCAAATTTTTTTTTTGAAAGACAACGGGCGGGAATTCAAAAATTAAGTTTTTTGCCAAATAAGAAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGGAAAAAGAAAACAAGAATAA</pcr_primer_p1>
		<pcr_primer_p2>CATTCTCTTCGATATCCACATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAGGAAAAAGAAAACAAGAATAAGATGAATATAAAAATATGCATCTTTATGAATTTATTAAAAGATTGCTTTCAAGCTTCTCTCCAACTCGCTGGTATTAGACTGGCGGCAAGTGGCAGTTCTGAAAATATTCAGGACTACATTCACTTTTTTGATTCTGAAAAATGTTAATTTCTATTGTTTCATTCAACAAAGACAACGGCAAATCAGAAGACGAATGAGGTCAATGTGGATATCGAAGAGAATG</canonical_amplicon>
		<polymorphic_amplicon>GAAGGAAAAAGAAAACAAGAATAAGATGAATATAAAAATATGCATCTTTATGAATTTATTAAAARATTGCTTTCAAGCTTCTCTCCAACTCGCTGGTATTAGACTGGCGGCAAGTGGCAGTTCTGAAAATATTCAGGACTACATTCACTTTTTTGATTCTGAAAAATGTTAATTTCTATTGTTTCATTCAACAAAGACAACGGCAAATCAGAAGACGAATGAGGTCAATGTGGATATCGAAGAGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7352</snp_id>
        <super_contig>c003800591.Contig1</super_contig>
        <contig_pos>56144</contig_pos>
        <strand>+</strand>
        <context>ATTAAACTCC[G/T]TCAGATCTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAATGTTCAGACTGGAACTATGCCAGTGTCTGCAAAATATTAAACTCC</left_flank>
        <right_flank>TCAGATCTCTGAGTATGCTTCAAGCGAGCCTTAAAACCTTTCATGCTCCC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTCAGGAGCAATAGATCCTGAAGAGTTTGAATGTTTGAAAAAAAATTTCACAAAAATTACCGTATCCAGTAGTTGTGTATACATTCATACTGAAGAAAAATGCACTTTCAAATGTCCATTTCCAGTTATTTTGCGGATCTTCTAGTTTGTAGTAAGTGCTACCTTTGTACTGCCCCTCCAGTTTCATTAGTTCGATATAGGCTTCCTGAGAATTGAAAAAAAAATTATTAAAAAATTTAGAGCGAGAAGCACTGTTTTGAAAATGGATAGTTTTTATCTGCAGAAAGCTTACCCGAATATAAACTTTCATCTCTGAATGTGAAGTTGTCGTGTTAATATCATTTACAGATTCAGTCATATTCTCAGCCAATTTTTCCAGTAACTCTTCGAGATGATGAACATGTCGGAGTGTTTTCTGAAAAAAAAAAATACATTTTGAAGCAATTAAAAAATGTTCAGACTGGAACTATGCCAGTGTCTGCAAAATATTAAACTCCGTCAGATCTCTGAGTATGCTTCAAGCGAGCCTTAAAACCTTTCATGCTCCCCAAAAAATCTCACTGCTTTTTCATGTCGACTCTCCACGGACCAAAACATTGCAGCACCCAGCAACGTATATAAAAGGACCAAAATTACGACACAAATGTGCCGAAATCCTATTTGCTTCCTATGAAAAGCAAACCAATACATGGATTTATCGAATCGTCGCAGTGTTGGAATCACGGGCTGGCCAAGTGCTCCAGGACTACTGTATCTGCTGATACCATCTCCATGAGTGCTCATTCTATGTTGCAGATGGCTGGGAAGCTTATTGTAGAAGTCTCGATCGCGACCTAAAAATGTTTTTCGTTAATTTTGCTTAAAGCCACTGTACCTGTCACGGTATAGTTATTTCTCTCATAATATTTCTCAATCGGGTCTTCTGGATTTCCAACTTTTGTTCCAATCGTCGCGTTTCCACGATCTATGGACGCGTGTCTGGTGTACCTGTGAGTACT</canonical>
            <polymorphic>GATTCAGGAGCAATAGATCCTGAAGAGTTTGAATGTTTGAAAAAAAATTTCACAAAAATTACCGTATCCAGTAGTTGTGTATACATTCATACTGAAGAAAAATGCACTTTCAAATGTCCATTTCCAGTTATTTTGCGGATCTTCTAGTTTGTAGTAAGTGCTACCTTTGTACTGCCCCTCCAGTTTCATTAGTTCGATATAGGCTTCCTGAGAATTGAAAAAAAAATTATTAAAAAATTTAGAGCGAGAAGCACTGTTTTGAAAATGGATAGTTTTTATCTGCAGAAAGCTTACCCGAATATAAACTTTCATCTCTGAATGTGAAGTTGTCGTGTTAATATCATTTACAGATTCAGTCATATTCTCAGCCAATTTTTCCAGTAACTCTTCGAGATGATGAACATGTCGGAGTGTTTTCTGAAAAAAAAAAATACATTTTGAAGCAATTAAAAAATGTTCAGACTGGAACTATGCCAGTGTCTGCAAAATATTAAACTCCKTCAGATCTCTGAGTATGCTTCAAGCGAGCCTTAAAACCTTTCATGCTCCCCAAAAAATCTCACTGCTTTTTCATGTCGACTCTCCACGGACCAAAACATTGCAGCACCCAGCAACGTATATAAAAGGACCAAAATTACGACACAAATGTGCCGAAATCCTATTTGCTTCCTATGAAAAGCAAACCAATACATGGATTTATCGAATCGTCGCAGTGTTGGAATCACGGGCTGGCCAAGTGCTCCAGGACTACTGTATCTGCTGATACCATCTCCATGAGTGCTCATTCTATGTTGCAGATGGCTGGGAAGCTTATTGTAGAAGTCTCGATCGCGACCTAAAAATGTTTTTCGTTAATTTTGCTTAAAGCCACTGTACCTGTCACGGTATAGTTATTTCTCTCATAATATTTCTCAATCGGGTCTTCTGGATTTCCAACTTTTGTTCCAATCGTCGCGTTTCCACGATCTATGGACGCGTGTCTGGTGTACCTGTGAGTACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTGTTAATATCATTTACAGATTCA</pcr_primer_p1>
		<pcr_primer_p2>ACATGAAAAAGCAGTGAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CGTGTTAATATCATTTACAGATTCAGTCATATTCTCAGCCAATTTTTCCAGTAACTCTTCGAGATGATGAACATGTCGGAGTGTTTTCTGAAAAAAAAAAATACATTTTGAAGCAATTAAAAAATGTTCAGACTGGAACTATGCCAGTGTCTGCAAAATATTAAACTCCGTCAGATCTCTGAGTATGCTTCAAGCGAGCCTTAAAACCTTTCATGCTCCCCAAAAAATCTCACTGCTTTTTCATGT</canonical_amplicon>
		<polymorphic_amplicon>CGTGTTAATATCATTTACAGATTCAGTCATATTCTCAGCCAATTTTTCCAGTAACTCTTCGAGATGATGAACATGTCGGAGTGTTTTCTGAAAAAAAAAAATACATTTTGAAGCAATTAAAAAATGTTCAGACTGGAACTATGCCAGTGTCTGCAAAATATTAAACTCCKTCAGATCTCTGAGTATGCTTCAAGCGAGCCTTAAAACCTTTCATGCTCCCCAAAAAATCTCACTGCTTTTTCATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7354</snp_id>
        <super_contig>c003800591.Contig1</super_contig>
        <contig_pos>58505</contig_pos>
        <strand>+</strand>
        <context>AAATCCGATT[A/T]TCTCGTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACCTAGTCTTTGGTTCTTTGAAACTTAGACTGTGTAGAAAAATCCGATT</left_flank>
        <right_flank>TCTCGTTTTTCGTTTTTGTGACGCTTTGATCTAAATAGTGAGAACGAAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAATTCTAGTTTTTTTCTAGAAAATAAATATTTTGGTATGCTAGACTTAAATGCTAGACTTAAAATATTTTGGTATGCTAGACTTAAATTTTGACAAATTTTTCGAACTGCATTACATAAATAATCGAATGTTTGAATATTTTTGTTGAAGAATTACATAACTTGAATAATCCAAAAATCGGAGTACCCTAAACGTTAATCAACCCGGTGTTTTCTATTTTATACACACATTTGTTTGCAAAATCGTGTTACAAGATTAAATTCGGACACAATAGAAATATTCTAAGGGTCAATTTGTAAACACATATTTTTTGGGTTCAGAATTATGAGGCGTGACGTATACCGACTTTTCGAGAAGAATTAAATGGAATTCTTGAAGGGATTAATATATAAAAGGATTACCGTAATCTTAAGAAACAGTAATCGGGTCATATGTCAACATTTCGAGACCTAGTCTTTGGTTCTTTGAAACTTAGACTGTGTAGAAAAATCCGATTTTCTCGTTTTTCGTTTTTGTGACGCTTTGATCTAAATAGTGAGAACGAAAAAAGGAAAAGTTTTGCTAAATATTATCTGACATAGTAAAATAATACCAATGCTTGTGTAATTTTACAATCCTTGTATTATGGTTTTTATTGGAAGAATATCAGCGCGAAGTTGATTATTTCAGTAAAAATTCAAATAAAATGAGTTCCACAAATAGAAATTACAAAACGACATTAAAAAAAAGAATCAACAAAAATAAATAATCGAAATGAATCAAAATAAATTTTGTAAACTTTTCACATTGGAGCAACAGCATGCACATTGGCATGAGTTGAATAACGTTTTGGGAACATTCTCGAAACTTTTGTTCTAATTTTTTTAGTTGTTAGTAGAAGTAATAAAGGTAGACAAATTTCGGGAATGTAATTGAGAACGGAGAAAATTATGACCAGTGGACTATTGTAATTGATGTAGGTTGAAGGTTTGATAATGACAAAAAACTCAGTCCCAAC</canonical>
            <polymorphic>GAAAATTCTAGTTTTTTTCTAGAAAATAAATATTTTGGTATGCTAGACTTAAATGCTAGACTTAAAATATTTTGGTATGCTAGACTTAAATTTTGACAAATTTTTCGAACTGCATTACATAAATAATCGAATGTTTGAATATTTTTGTTGAAGAATTACATAACTTGAATAATCCAAAAATCGGAGTACCCTAAACGTTAATCAACCCGGTGTTTTCTATTTTATACACACATTTGTTTGCAAAATCGTGTTACAAGATTAAATTCGGACACAATAGAAATATTCTAAGGGTCAATTTGTAAACACATATTTTTTGGGTTCAGAATTATGAGGCGTGACGTATACCGACTTTTCGAGAAGAATTAAATGGAATTCTTGAAGGGATTAATATATAAAAGGATTACCGTAATCTTAAGAAACAGTAATCGGGTCATATGTCAACATTTCGAGACCTAGTCTTTGGTTCTTTGAAACTTAGACTGTGTAGAAAAATCCGATTWTCTCGTTTTTCGTTTTTGTGACGCTTTGATCTAAATAGTGAGAACGAAAAAAGGAAAAGTTTTGCTAAATATTATCTGACATAGTAAAATAATACCAATGCTTGTGTAATTTTACAATCCTTGTATTATGGTTTTTATTGGAAGAATATCAGCGCGAAGTTGATTATTTCAGTAAAAATTCAAATAAAATGAGTTCCACAAATAGAAATTACAAAACGACATTAAAAAAAAGAATCAACAAAAATAAATAATCGAAATGAATCAAAATAAATTTTGTAAACTTTTCACATTGGAGCAACAGCATGCACATTGGCATGAGTTGAATAACGTTTTGGGAACATTCTCGAAACTTTTGTTCTAATTTTTTTAGTTGTTAGTAGAAGTAATAAAGGTAGACAAATTTCGGGAATGTAATTGAGAACGGAGAAAATTATGACCAGTGGACTATTGTAATTGATGTAGGTTGAAGGTTTGATAATGACAAAAAACTCAGTCCCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGACCTAGTCTTTGGTTCTTTG</pcr_primer_p1>
		<pcr_primer_p2>TGGAACTCATTTTATTTGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGACCTAGTCTTTGGTTCTTTGAAACTTAGACTGTGTAGAAAAATCCGATTTTCTCGTTTTTCGTTTTTGTGACGCTTTGATCTAAATAGTGAGAACGAAAAAAGGAAAAGTTTTGCTAAATATTATCTGACATAGTAAAATAATACCAATGCTTGTGTAATTTTACAATCCTTGTATTATGGTTTTTATTGGAAGAATATCAGCGCGAAGTTGATTATTTCAGTAAAAATTCAAATAAAATGAGTTCCA</canonical_amplicon>
		<polymorphic_amplicon>AGACCTAGTCTTTGGTTCTTTGAAACTTAGACTGTGTAGAAAAATCCGATTWTCTCGTTTTTCGTTTTTGTGACGCTTTGATCTAAATAGTGAGAACGAAAAAAGGAAAAGTTTTGCTAAATATTATCTGACATAGTAAAATAATACCAATGCTTGTGTAATTTTACAATCCTTGTATTATGGTTTTTATTGGAAGAATATCAGCGCGAAGTTGATTATTTCAGTAAAAATTCAAATAAAATGAGTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7355</snp_id>
        <super_contig>c003800591.Contig1</super_contig>
        <contig_pos>58435</contig_pos>
        <strand>+</strand>
        <context>CAGTAATCGG[A/G]TCATATGTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGGATTAATATATAAAAGGATTACCGTAATCTTAAGAAACAGTAATCGG</left_flank>
        <right_flank>TCATATGTCAACATTTCGAGACCTAGTCTTTGGTTCTTTGAAACTTAGAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAATAGGATACTTGAAAAATTGTGATCATTTTGACCTTAAAATTGTTTTTATCTAGTTTATTTGCAGGAAAATTCTAGTTTTTTTCTAGAAAATAAATATTTTGGTATGCTAGACTTAAATGCTAGACTTAAAATATTTTGGTATGCTAGACTTAAATTTTGACAAATTTTTCGAACTGCATTACATAAATAATCGAATGTTTGAATATTTTTGTTGAAGAATTACATAACTTGAATAATCCAAAAATCGGAGTACCCTAAACGTTAATCAACCCGGTGTTTTCTATTTTATACACACATTTGTTTGCAAAATCGTGTTACAAGATTAAATTCGGACACAATAGAAATATTCTAAGGGTCAATTTGTAAACACATATTTTTTGGGTTCAGAATTATGAGGCGTGACGTATACCGACTTTTCGAGAAGAATTAAATGGAATTCTTGAAGGGATTAATATATAAAAGGATTACCGTAATCTTAAGAAACAGTAATCGGGTCATATGTCAACATTTCGAGACCTAGTCTTTGGTTCTTTGAAACTTAGACTGTGTAGAAAAATCCGATTTTCTCGTTTTTCGTTTTTGTGACGCTTTGATCTAAATAGTGAGAACGAAAAAAGGAAAAGTTTTGCTAAATATTATCTGACATAGTAAAATAATACCAATGCTTGTGTAATTTTACAATCCTTGTATTATGGTTTTTATTGGAAGAATATCAGCGCGAAGTTGATTATTTCAGTAAAAATTCAAATAAAATGAGTTCCACAAATAGAAATTACAAAACGACATTAAAAAAAAGAATCAACAAAAATAAATAATCGAAATGAATCAAAATAAATTTTGTAAACTTTTCACATTGGAGCAACAGCATGCACATTGGCATGAGTTGAATAACGTTTTGGGAACATTCTCGAAACTTTTGTTCTAATTTTTTTAGTTGTTAGTAGAAGTAATAAAGGTAGACAAATTTCGGGAATGTAATTGAGAACGGAGAAAA</canonical>
            <polymorphic>AAAAAATAGGATACTTGAAAAATTGTGATCATTTTGACCTTAAAATTGTTTTTATCTAGTTTATTTGCAGGAAAATTCTAGTTTTTTTCTAGAAAATAAATATTTTGGTATGCTAGACTTAAATGCTAGACTTAAAATATTTTGGTATGCTAGACTTAAATTTTGACAAATTTTTCGAACTGCATTACATAAATAATCGAATGTTTGAATATTTTTGTTGAAGAATTACATAACTTGAATAATCCAAAAATCGGAGTACCCTAAACGTTAATCAACCCGGTGTTTTCTATTTTATACACACATTTGTTTGCAAAATCGTGTTACAAGATTAAATTCGGACACAATAGAAATATTCTAAGGGTCAATTTGTAAACACATATTTTTTGGGTTCAGAATTATGAGGCGTGACGTATACCGACTTTTCGAGAAGAATTAAATGGAATTCTTGAAGGGATTAATATATAAAAGGATTACCGTAATCTTAAGAAACAGTAATCGGRTCATATGTCAACATTTCGAGACCTAGTCTTTGGTTCTTTGAAACTTAGACTGTGTAGAAAAATCCGATTTTCTCGTTTTTCGTTTTTGTGACGCTTTGATCTAAATAGTGAGAACGAAAAAAGGAAAAGTTTTGCTAAATATTATCTGACATAGTAAAATAATACCAATGCTTGTGTAATTTTACAATCCTTGTATTATGGTTTTTATTGGAAGAATATCAGCGCGAAGTTGATTATTTCAGTAAAAATTCAAATAAAATGAGTTCCACAAATAGAAATTACAAAACGACATTAAAAAAAAGAATCAACAAAAATAAATAATCGAAATGAATCAAAATAAATTTTGTAAACTTTTCACATTGGAGCAACAGCATGCACATTGGCATGAGTTGAATAACGTTTTGGGAACATTCTCGAAACTTTTGTTCTAATTTTTTTAGTTGTTAGTAGAAGTAATAAAGGTAGACAAATTTCGGGAATGTAATTGAGAACGGAGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTACAAGATTAAATTCGGACAC</pcr_primer_p1>
		<pcr_primer_p2>CGGATTTTTCTACACAGTCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTTACAAGATTAAATTCGGACACAATAGAAATATTCTAAGGGTCAATTTGTAAACACATATTTTTTGGGTTCAGAATTATGAGGCGTGACGTATACCGACTTTTCGAGAAGAATTAAATGGAATTCTTGAAGGGATTAATATATAAAAGGATTACCGTAATCTTAAGAAACAGTAATCGGGTCATATGTCAACATTTCGAGACCTAGTCTTTGGTTCTTTGAAACTTAGACTGTGTAGAAAAATCCG</canonical_amplicon>
		<polymorphic_amplicon>GTTACAAGATTAAATTCGGACACAATAGAAATATTCTAAGGGTCAATTTGTAAACACATATTTTTTGGGTTCAGAATTATGAGGCGTGACGTATACCGACTTTTCGAGAAGAATTAAATGGAATTCTTGAAGGGATTAATATATAAAAGGATTACCGTAATCTTAAGAAACAGTAATCGGRTCATATGTCAACATTTCGAGACCTAGTCTTTGGTTCTTTGAAACTTAGACTGTGTAGAAAAATCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7357</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>8211</contig_pos>
        <strand></strand>
        <context>ccgaaattta[A/G]yaagtatggt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAACAGAAAAATGTTGAACTTTTCGGAACCCGGGCCGGGCCGAAATTTA</left_flank>
        <right_flank>CAAGTATGGTACAAATTGATCCATAAATGGTGATAAAAAAAACTCAAAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAATTTAATTTCATTCCGAACCGTAAAAAATTTGAAATAAAAGAAATATATTCAAGGTCAGAATATGCCATTATAAAAATATTGAAAAATTAAGATAAAACCATATTGTAATTTTAAAAAATGCTATCACTTAAAAATCATCGAAAAACTATCAATTAGTGGAATTAAAACAGTATTAATTTTAGACTATTCTCTTTTTGAAAGTTTTAGGCTTCTTCAAAATTTTTATAGCTTCTGAGAATGCAAAAAAGGTAAACATCATATATGTCGCGGGCCGGGCCGGCCCGGCTCGGGTTTTCGAGGCAAAAATTTTTAAGTGACATTTTTTGAGAGAAAACAGGATTATTGGGAATATTTTATCAAAATTTCTTCGTTTTCAAGTTTAAGAAGGGTCGTGGGATGAATTTCGTGCTTTAAAATGATTATTTTGAAAAAAATGTATCAAAAATTAACAGAAAAATGTTGAACTTTTCGGAACCCGGGCCGGGCCGAAATTTAACAAGTATGGTACAAATTGATCCATAAATGGTGATAAAAAAAACTCAAAATTAGAAGTAAGGACCTCAAGTACCATTCCATAGAGACTGAAACTTGAAAAAACAGATGCCTTTCAGAACTCTTCAAATAGTTGGAAAACTATAAATATTCTGAAACTTTATGAATGCAAATTTTTCAATCTAGGTCTATTTTACACTCTCTACAATTTTCAAACTTGTCGGAAACTTGACAGACGAGCTCCAGATTTTTGAAAATAGACCGAATACCAACTGAAAAATACGGTAGCAACTGGAAAATACGTATATCTTCTTTATCTATAACTTGGAAACTCTATAACTTGGCTTTAGAATTGAAACACTTTATTTTTTTCATTCTTACACCATCTCCGTATTTAATATAGTGACGGAAATGAATTGATTCCGCAAATCGCATTTCTCCCTTCAAGGATCTCTCTTTCATCCCCCACATCTCTCTCTCTCTGTCTCTCTCTCTCTCTCTCTC</canonical>
            <polymorphic>CAAATTTAATTTCATTCCGAACCGTAAAAAATTTGAAATAAAAGAAATATATTCAAGGTCAGAATATGCCATTATAAAAATATTGAAAAATTAAGATAAAACCATATTGTAATTTTAAAAAATGCTATCACTTAAAAATCATCGAAAAACTATCAATTAGTGGAATTAAAACAGTATTAATTTTAGACTATTCTCTTTTTGAAAGTTTTAGGCTTCTTCAAAATTTTTATAGCTTCTGAGAATGCAAAAAAGGTAAACATCATATATGTCGCGGGCCGGGCCGGCCCGGCTCGGGTTTTCGAGGCAAAAATTTTTAAGTGACATTTTTTGAGAGAAAACAGGATTATTGGGAATATTTTATCAAAATTTCTTCGTTTTCAAGTTTAAGAAGGGTCGTGGGATGAATTTCGTGCTTTAAAATGATTATTTTGAAAAAAATGTATCAAAAATTAACAGAAAAATGTTGAACTTTTCGGAACCCGGGCCGGGCCGAAATTTARCAAGTATGGTACAAATTGATCCATAAATGGTGATAAAAAAAACTCAAAATTAGAAGTAAGGACCTCAAGTACCATTCCATAGAGACTGAAACTTGAAAAAACAGATGCCTTTCAGAACTCTTCAAATAGTTGGAAAACTATAAATATTCTGAAACTTTATGAATGCAAATTTTTCAATCTAGGTCTATTTTACACTCTCTACAATTTTCAAACTTGTCGGAAACTTGACAGACGAGCTCCAGATTTTTGAAAATAGACCGAATACCAACTGAAAAATACGGTAGCAACTGGAAAATACGTATATCTTCTTTATCTATAACTTGGAAACTCTATAACTTGGCTTTAGAATTGAAACACTTTATTTTTTTCATTCTTACACCATCTCCGTATTTAATATAGTGACGGAAATGAATTGATTCCGCAAATCGCATTTCTCCCTTCAAGGATCTCTCTTTCATCCCCCACATCTCTCTCTCTCTGTCTCTCTCTCTCTCTCTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>394 137 109 85 70 47 35 34 31 24 17 11 6</canonical_bands>
                <polymorphic_bands>441 137 109 85 70 35 34 31 24 17 11 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAGCTTCTGAGAATGCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGGTCCTTACTTCTAATTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>338</pcr_amplicon_size>
		<canonical_amplicon>ATAGCTTCTGAGAATGCAAAAAAGGTAAACATCATATATGTCGCGGGCCGGGCCGGCCCGGCTCGGGTTTTCGAGGCAAAAATTTTTAAGTGACATTTTTTGAGAGAAAACAGGATTATTGGGAATATTTTATCAAAATTTCTTCGTTTTCAAGTTTAAGAAGGGTCGTGGGATGAATTTCGTGCTTTAAAATGATTATTTTGAAAAAAATGTATCAAAAATTAACAGAAAAATGTTGAACTTTTCGGAACCCGGGCCGGGCCGAAATTTAACAAGTATGGTACAAATTGATCCATAAATGGTGATAAAAAAAACTCAAAATTAGAAGTAAGGACCTC</canonical_amplicon>
		<polymorphic_amplicon>ATAGCTTCTGAGAATGCAAAAAAGGTAAACATCATATATGTCGCGGGCCGGGCCGGCCCGGCTCGGGTTTTCGAGGCAAAAATTTTTAAGTGACATTTTTTGAGAGAAAACAGGATTATTGGGAATATTTTATCAAAATTTCTTCGTTTTCAAGTTTAAGAAGGGTCGTGGGATGAATTTCGTGCTTTAAAATGATTATTTTGAAAAAAATGTATCAAAAATTAACAGAAAAATGTTGAACTTTTCGGAACCCGGGCCGGGCCGAAATTTARCAAGTATGGTACAAATTGATCCATAAATGGTGATAAAAAAAACTCAAAATTAGAAGTAAGGACCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7358</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>8212</contig_pos>
        <strand></strand>
        <context>cgaaatttar[C/T]aagtatggtA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAACAGAAAAATGTTGAACTTTTCGGAACCCGGGCCGGGCCGAAATTTAA</left_flank>
        <right_flank>AAGTATGGTACAAATTGATCCATAAATGGTGATAAAAAAAACTCAAAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTAATTTCATTCCGAACCGTAAAAAATTTGAAATAAAAGAAATATATTCAAGGTCAGAATATGCCATTATAAAAATATTGAAAAATTAAGATAAAACCATATTGTAATTTTAAAAAATGCTATCACTTAAAAATCATCGAAAAACTATCAATTAGTGGAATTAAAACAGTATTAATTTTAGACTATTCTCTTTTTGAAAGTTTTAGGCTTCTTCAAAATTTTTATAGCTTCTGAGAATGCAAAAAAGGTAAACATCATATATGTCGCGGGCCGGGCCGGCCCGGCTCGGGTTTTCGAGGCAAAAATTTTTAAGTGACATTTTTTGAGAGAAAACAGGATTATTGGGAATATTTTATCAAAATTTCTTCGTTTTCAAGTTTAAGAAGGGTCGTGGGATGAATTTCGTGCTTTAAAATGATTATTTTGAAAAAAATGTATCAAAAATTAACAGAAAAATGTTGAACTTTTCGGAACCCGGGCCGGGCCGAAATTTAACAAGTATGGTACAAATTGATCCATAAATGGTGATAAAAAAAACTCAAAATTAGAAGTAAGGACCTCAAGTACCATTCCATAGAGACTGAAACTTGAAAAAACAGATGCCTTTCAGAACTCTTCAAATAGTTGGAAAACTATAAATATTCTGAAACTTTATGAATGCAAATTTTTCAATCTAGGTCTATTTTACACTCTCTACAATTTTCAAACTTGTCGGAAACTTGACAGACGAGCTCCAGATTTTTGAAAATAGACCGAATACCAACTGAAAAATACGGTAGCAACTGGAAAATACGTATATCTTCTTTATCTATAACTTGGAAACTCTATAACTTGGCTTTAGAATTGAAACACTTTATTTTTTTCATTCTTACACCATCTCCGTATTTAATATAGTGACGGAAATGAATTGATTCCGCAAATCGCATTTCTCCCTTCAAGGATCTCTCTTTCATCCCCCACATCTCTCTCTCTCTGTCTCTCTCTCTCTCTCTCTCT</canonical>
            <polymorphic>AAATTTAATTTCATTCCGAACCGTAAAAAATTTGAAATAAAAGAAATATATTCAAGGTCAGAATATGCCATTATAAAAATATTGAAAAATTAAGATAAAACCATATTGTAATTTTAAAAAATGCTATCACTTAAAAATCATCGAAAAACTATCAATTAGTGGAATTAAAACAGTATTAATTTTAGACTATTCTCTTTTTGAAAGTTTTAGGCTTCTTCAAAATTTTTATAGCTTCTGAGAATGCAAAAAAGGTAAACATCATATATGTCGCGGGCCGGGCCGGCCCGGCTCGGGTTTTCGAGGCAAAAATTTTTAAGTGACATTTTTTGAGAGAAAACAGGATTATTGGGAATATTTTATCAAAATTTCTTCGTTTTCAAGTTTAAGAAGGGTCGTGGGATGAATTTCGTGCTTTAAAATGATTATTTTGAAAAAAATGTATCAAAAATTAACAGAAAAATGTTGAACTTTTCGGAACCCGGGCCGGGCCGAAATTTAAYAAGTATGGTACAAATTGATCCATAAATGGTGATAAAAAAAACTCAAAATTAGAAGTAAGGACCTCAAGTACCATTCCATAGAGACTGAAACTTGAAAAAACAGATGCCTTTCAGAACTCTTCAAATAGTTGGAAAACTATAAATATTCTGAAACTTTATGAATGCAAATTTTTCAATCTAGGTCTATTTTACACTCTCTACAATTTTCAAACTTGTCGGAAACTTGACAGACGAGCTCCAGATTTTTGAAAATAGACCGAATACCAACTGAAAAATACGGTAGCAACTGGAAAATACGTATATCTTCTTTATCTATAACTTGGAAACTCTATAACTTGGCTTTAGAATTGAAACACTTTATTTTTTTCATTCTTACACCATCTCCGTATTTAATATAGTGACGGAAATGAATTGATTCCGCAAATCGCATTTCTCCCTTCAAGGATCTCTCTTTCATCCCCCACATCTCTCTCTCTCTGTCTCTCTCTCTCTCTCTCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGCTTCTGAGAATGCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGGTCCTTACTTCTAATTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>338</pcr_amplicon_size>
		<canonical_amplicon>ATAGCTTCTGAGAATGCAAAAAAGGTAAACATCATATATGTCGCGGGCCGGGCCGGCCCGGCTCGGGTTTTCGAGGCAAAAATTTTTAAGTGACATTTTTTGAGAGAAAACAGGATTATTGGGAATATTTTATCAAAATTTCTTCGTTTTCAAGTTTAAGAAGGGTCGTGGGATGAATTTCGTGCTTTAAAATGATTATTTTGAAAAAAATGTATCAAAAATTAACAGAAAAATGTTGAACTTTTCGGAACCCGGGCCGGGCCGAAATTTAACAAGTATGGTACAAATTGATCCATAAATGGTGATAAAAAAAACTCAAAATTAGAAGTAAGGACCTC</canonical_amplicon>
		<polymorphic_amplicon>ATAGCTTCTGAGAATGCAAAAAAGGTAAACATCATATATGTCGCGGGCCGGGCCGGCCCGGCTCGGGTTTTCGAGGCAAAAATTTTTAAGTGACATTTTTTGAGAGAAAACAGGATTATTGGGAATATTTTATCAAAATTTCTTCGTTTTCAAGTTTAAGAAGGGTCGTGGGATGAATTTCGTGCTTTAAAATGATTATTTTGAAAAAAATGTATCAAAAATTAACAGAAAAATGTTGAACTTTTCGGAACCCGGGCCGGGCCGAAATTTAAYAAGTATGGTACAAATTGATCCATAAATGGTGATAAAAAAAACTCAAAATTAGAAGTAAGGACCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7359</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>11048</contig_pos>
        <strand>+</strand>
        <context>TCGCCCTTTA[G/T]TGAGATTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAAGCGACTTGAAAGGGGATCTGCATAATCTCAGCGAAATCGCCCTTTA</left_flank>
        <right_flank>TGAGATTTCAAATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGAATTGTTTCCGGTTGTTTTGCTTTCAAACAGATTACTTTTCAAGTTCGTCTTCAACTTCTTCTTCGTCTTCTCCTCCTTTTTAAGAGGAGAAAGACAAATTCGGTTTGAGTTTGAGCCTGAGATTGGGGTTGTTGGTAATTTTTAGAGATTTGAAACGGGAAGTCTTCCTCTTCAGAGCTCGTTCTGTCAAGGCTGATCTGAAAAGAAGGCAAAAACAAATTCATTGGCATCCGAGATGCTGTGAGACGATAACCGGAAACAATTTTCTCCTTGGCCTCTCTACAAATCACGACAATTTGTTTCTCGGGGTGCTATCCTCTTCGTTTTTTGTCTTCTTTCCCTCTTTTGGATATTGCCTTTTCAAAGATATCCTCGCACTCATTCATATCTAGAAACTTGCATTGAACCTGCCTATAAGCAGTGGAAAAAAACAGAATATAGAGGGAAAGCGACTTGAAAGGGGATCTGCATAATCTCAGCGAAATCGCCCTTTATTGAGATTTCAAATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCAACCTTCAACGAAAATCCAATCCCATGAGTTTCAAAACGAGATATGAAATGTTTAGAATAATATAGAAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATT</canonical>
            <polymorphic>CTTGAATTGTTTCCGGTTGTTTTGCTTTCAAACAGATTACTTTTCAAGTTCGTCTTCAACTTCTTCTTCGTCTTCTCCTCCTTTTTAAGAGGAGAAAGACAAATTCGGTTTGAGTTTGAGCCTGAGATTGGGGTTGTTGGTAATTTTTAGAGATTTGAAACGGGAAGTCTTCCTCTTCAGAGCTCGTTCTGTCAAGGCTGATCTGAAAAGAAGGCAAAAACAAATTCATTGGCATCCGAGATGCTGTGAGACGATAACCGGAAACAATTTTCTCCTTGGCCTCTCTACAAATCACGACAATTTGTTTCTCGGGGTGCTATCCTCTTCGTTTTTTGTCTTCTTTCCCTCTTTTGGATATTGCCTTTTCAAAGATATCCTCGCACTCATTCATATCTAGAAACTTGCATTGAACCTGCCTATAAGCAGTGGAAAAAAACAGAATATAGAGGGAAAGCGACTTGAAAGGGGATCTGCATAATCTCAGCGAAATCGCCCTTTAKTGAGATTTCAAATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCAACCTTCAACGAAAATCCAATCCCATGAGTTTCAAAACGAGATATGAAATGTTTAGAATAATATAGAAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTTTTGGATATTGCCTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCATATCTCGTTTTGAAACTCAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTCTTTTGGATATTGCCTTTTCAAAGATATCCTCGCACTCATTCATATCTAGAAACTTGCATTGAACCTGCCTATAAGCAGTGGAAAAAAACAGAATATAGAGGGAAAGCGACTTGAAAGGGGATCTGCATAATCTCAGCGAAATCGCCCTTTATTGAGATTTCAAATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCAACCTTCAACGAAAATCCAATCCCATGAGTTTCAAAACGAGATATGA</canonical_amplicon>
		<polymorphic_amplicon>CTCTTTTGGATATTGCCTTTTCAAAGATATCCTCGCACTCATTCATATCTAGAAACTTGCATTGAACCTGCCTATAAGCAGTGGAAAAAAACAGAATATAGAGGGAAAGCGACTTGAAAGGGGATCTGCATAATCTCAGCGAAATCGCCCTTTAKTGAGATTTCAAATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCAACCTTCAACGAAAATCCAATCCCATGAGTTTCAAAACGAGATATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7360</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>10985</contig_pos>
        <strand></strand>
        <context>TGGAAAAAAR[C/G]AGAATATAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCATATCTAGAAACTTGCATTGAACCTGCCTATAAGCAGTGGAAAAAAA</left_flank>
        <right_flank>AGAATATAGAGGGAAAGCGACTTGAAAGGGGATCTGCATAATCTCAGCGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCCAGCTTTTCCTCGCTTTAAGTTCTCCAGAAAGTTATCCGTATGATAGTTCTCAAAGTTTTCTTGAATTGTTTCCGGTTGTTTTGCTTTCAAACAGATTACTTTTCAAGTTCGTCTTCAACTTCTTCTTCGTCTTCTCCTCCTTTTTAAGAGGAGAAAGACAAATTCGGTTTGAGTTTGAGCCTGAGATTGGGGTTGTTGGTAATTTTTAGAGATTTGAAACGGGAAGTCTTCCTCTTCAGAGCTCGTTCTGTCAAGGCTGATCTGAAAAGAAGGCAAAAACAAATTCATTGGCATCCGAGATGCTGTGAGACGATAACCGGAAACAATTTTCTCCTTGGCCTCTCTACAAATCACGACAATTTGTTTCTCGGGGTGCTATCCTCTTCGTTTTTTGTCTTCTTTCCCTCTTTTGGATATTGCCTTTTCAAAGATATCCTCGCACTCATTCATATCTAGAAACTTGCATTGAACCTGCCTATAAGCAGTGGAAAAAAACAGAATATAGAGGGAAAGCGACTTGAAAGGGGATCTGCATAATCTCAGCGAAATCGCCCTTTATTGAGATTTCAAATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCAACCTTCAACGAAAATCCAATCCCATGAGTTTCAAAACGAGATATGAAATGTTTAGAATAATATAGAAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAA</canonical>
            <polymorphic>CCCCAGCTTTTCCTCGCTTTAAGTTCTCCAGAAAGTTATCCGTATGATAGTTCTCAAAGTTTTCTTGAATTGTTTCCGGTTGTTTTGCTTTCAAACAGATTACTTTTCAAGTTCGTCTTCAACTTCTTCTTCGTCTTCTCCTCCTTTTTAAGAGGAGAAAGACAAATTCGGTTTGAGTTTGAGCCTGAGATTGGGGTTGTTGGTAATTTTTAGAGATTTGAAACGGGAAGTCTTCCTCTTCAGAGCTCGTTCTGTCAAGGCTGATCTGAAAAGAAGGCAAAAACAAATTCATTGGCATCCGAGATGCTGTGAGACGATAACCGGAAACAATTTTCTCCTTGGCCTCTCTACAAATCACGACAATTTGTTTCTCGGGGTGCTATCCTCTTCGTTTTTTGTCTTCTTTCCCTCTTTTGGATATTGCCTTTTCAAAGATATCCTCGCACTCATTCATATCTAGAAACTTGCATTGAACCTGCCTATAAGCAGTGGAAAAAAASAGAATATAGAGGGAAAGCGACTTGAAAGGGGATCTGCATAATCTCAGCGAAATCGCCCTTTATTGAGATTTCAAATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCAACCTTCAACGAAAATCCAATCCCATGAGTTTCAAAACGAGATATGAAATGTTTAGAATAATATAGAAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTTTTGGATATTGCCTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCATATCTCGTTTTGAAACTCAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTCTTTTGGATATTGCCTTTTCAAAGATATCCTCGCACTCATTCATATCTAGAAACTTGCATTGAACCTGCCTATAAGCAGTGGAAAAAAACAGAATATAGAGGGAAAGCGACTTGAAAGGGGATCTGCATAATCTCAGCGAAATCGCCCTTTATTGAGATTTCAAATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCAACCTTCAACGAAAATCCAATCCCATGAGTTTCAAAACGAGATATGA</canonical_amplicon>
		<polymorphic_amplicon>CTCTTTTGGATATTGCCTTTTCAAAGATATCCTCGCACTCATTCATATCTAGAAACTTGCATTGAACCTGCCTATAAGCAGTGGAAAAAAASAGAATATAGAGGGAAAGCGACTTGAAAGGGGATCTGCATAATCTCAGCGAAATCGCCCTTTATTGAGATTTCAAATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCAACCTTCAACGAAAATCCAATCCCATGAGTTTCAAAACGAGATATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7361</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>56017</contig_pos>
        <strand>+</strand>
        <context>CTCTGTCAGC[A/C]CTTCTAAGGG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTTCTCGATGTCAGAAAGCGAGAACTGCTTTATTTTCTCTCTGTCAGC</left_flank>
        <right_flank>CTTCTAAGGGACAGCATATACATTATCTTGTTTCGCAAGTGGTGAACTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGAAATTGAGATAGCTAAGCTTGAGATATACGTATATTGTGGCCTTCTATTGGAGTGTATAGGGTAATTTTTCCTAGAATGTTTGTTTCCTTCAGGTCAAAATTCCCATGTTTAAAATTTTCGAATATTCTGGAAAGTCTTTCCAAATTTGCTTTCCCTATTGTTTAAATAGAATTCAACATTTTAGAGTTACTTCGTCATTATTATCATTTTTCTGGACAATGTGCTTCAAAACTTATCCCTTATTTTTCGGTTTTTTCTGAAAATTTCCGGAACATCTCATGACGTTCCCAGGCAATGTGACTCACGTTTTGTGAACCTATCCAAGAAATTTTTGTCCAGCTTCATTAATGATCCCGATTTCGGCTATAATCAAACACCATCCTATCAAGATTGGTAGTTCCACATAAGGTCAAATTCTGTACGTATTCGCCTCTTGTTCCTCCTTTTTTTCTCGATGTCAGAAAGCGAGAACTGCTTTATTTTCTCTCTGTCAGCCCTTCTAAGGGACAGCATATACATTATCTTGTTTCGCAAGTGGTGAACTGTGTCGTTTGATGGGACAAATAACAGGTCTGTCACCTTCTTCGCCTCCACGCACCTCCTTTCGAGTATTACAAATGTGTGTGTGCGTCTGTGTTACAGCTTCTTGCGATTTGAACAAAGAAAAATACTTGTGTTGCCCTTCCTCGCCTATTCTTGGTGTCAAATTTTTGATGATTCTAGCTAGCCGGTATCGGCATTGTTTTTCAGCTTTATTCTCTTCTGCTTGAATCATTTTTTGCTTAATATTTTTTTGGTTTTTATTTTTAGCATATTTACACTTCACATTTCTGAAAATAAAGATATTTTGAATCACAAAATTAGCACACTAGAATTGACCGACCATATGTCTGCAAATCGCTTTTTCTGTAATTTCTTGTGTCTAGCTCAGTCAATTTTCTTCTGAATCACCACTCCCTTCTATTCTAAGATTCTCAAAAACATTGAAATAGCGTA</canonical>
            <polymorphic>TAGAAATTGAGATAGCTAAGCTTGAGATATACGTATATTGTGGCCTTCTATTGGAGTGTATAGGGTAATTTTTCCTAGAATGTTTGTTTCCTTCAGGTCAAAATTCCCATGTTTAAAATTTTCGAATATTCTGGAAAGTCTTTCCAAATTTGCTTTCCCTATTGTTTAAATAGAATTCAACATTTTAGAGTTACTTCGTCATTATTATCATTTTTCTGGACAATGTGCTTCAAAACTTATCCCTTATTTTTCGGTTTTTTCTGAAAATTTCCGGAACATCTCATGACGTTCCCAGGCAATGTGACTCACGTTTTGTGAACCTATCCAAGAAATTTTTGTCCAGCTTCATTAATGATCCCGATTTCGGCTATAATCAAACACCATCCTATCAAGATTGGTAGTTCCACATAAGGTCAAATTCTGTACGTATTCGCCTCTTGTTCCTCCTTTTTTTCTCGATGTCAGAAAGCGAGAACTGCTTTATTTTCTCTCTGTCAGCMCTTCTAAGGGACAGCATATACATTATCTTGTTTCGCAAGTGGTGAACTGTGTCGTTTGATGGGACAAATAACAGGTCTGTCACCTTCTTCGCCTCCACGCACCTCCTTTCGAGTATTACAAATGTGTGTGTGCGTCTGTGTTACAGCTTCTTGCGATTTGAACAAAGAAAAATACTTGTGTTGCCCTTCCTCGCCTATTCTTGGTGTCAAATTTTTGATGATTCTAGCTAGCCGGTATCGGCATTGTTTTTCAGCTTTATTCTCTTCTGCTTGAATCATTTTTTGCTTAATATTTTTTTGGTTTTTATTTTTAGCATATTTACACTTCACATTTCTGAAAATAAAGATATTTTGAATCACAAAATTAGCACACTAGAATTGACCGACCATATGTCTGCAAATCGCTTTTTCTGTAATTTCTTGTGTCTAGCTCAGTCAATTTTCTTCTGAATCACCACTCCCTTCTATTCTAAGATTCTCAAAAACATTGAAATAGCGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>313 300 195 142 50</canonical_bands>
                <polymorphic_bands>337 313 300 50</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>300 176 148 131 81 70 24 23 23 15 5 4</canonical_bands>
                <polymorphic_bands>300 279 176 81 70 24 23 23 15 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCTATCAAGATTGGTAGTTCC</pcr_primer_p1>
		<pcr_primer_p2>GCACACACACATTTGTAATACTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATCCTATCAAGATTGGTAGTTCCACATAAGGTCAAATTCTGTACGTATTCGCCTCTTGTTCCTCCTTTTTTTCTCGATGTCAGAAAGCGAGAACTGCTTTATTTTCTCTCTGTCAGCCCTTCTAAGGGACAGCATATACATTATCTTGTTTCGCAAGTGGTGAACTGTGTCGTTTGATGGGACAAATAACAGGTCTGTCACCTTCTTCGCCTCCACGCACCTCCTTTCGAGTATTACAAATGTGTGTGTGC</canonical_amplicon>
		<polymorphic_amplicon>ATCCTATCAAGATTGGTAGTTCCACATAAGGTCAAATTCTGTACGTATTCGCCTCTTGTTCCTCCTTTTTTTCTCGATGTCAGAAAGCGAGAACTGCTTTATTTTCTCTCTGTCAGCMCTTCTAAGGGACAGCATATACATTATCTTGTTTCGCAAGTGGTGAACTGTGTCGTTTGATGGGACAAATAACAGGTCTGTCACCTTCTTCGCCTCCACGCACCTCCTTTCGAGTATTACAAATGTGTGTGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7362</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>56075</contig_pos>
        <strand>+</strand>
        <context>TGTGTCGTTT[A/G]ATGGGACAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGACAGCATATACATTATCTTGTTTCGCAAGTGGTGAACTGTGTCGTTT</left_flank>
        <right_flank>ATGGGACAAATAACAGGTCTGTCACCTTCTTCGCCTCCACGCACCTCCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAGGGTAATTTTTCCTAGAATGTTTGTTTCCTTCAGGTCAAAATTCCCATGTTTAAAATTTTCGAATATTCTGGAAAGTCTTTCCAAATTTGCTTTCCCTATTGTTTAAATAGAATTCAACATTTTAGAGTTACTTCGTCATTATTATCATTTTTCTGGACAATGTGCTTCAAAACTTATCCCTTATTTTTCGGTTTTTTCTGAAAATTTCCGGAACATCTCATGACGTTCCCAGGCAATGTGACTCACGTTTTGTGAACCTATCCAAGAAATTTTTGTCCAGCTTCATTAATGATCCCGATTTCGGCTATAATCAAACACCATCCTATCAAGATTGGTAGTTCCACATAAGGTCAAATTCTGTACGTATTCGCCTCTTGTTCCTCCTTTTTTTCTCGATGTCAGAAAGCGAGAACTGCTTTATTTTCTCTCTGTCAGCCCTTCTAAGGGACAGCATATACATTATCTTGTTTCGCAAGTGGTGAACTGTGTCGTTTGATGGGACAAATAACAGGTCTGTCACCTTCTTCGCCTCCACGCACCTCCTTTCGAGTATTACAAATGTGTGTGTGCGTCTGTGTTACAGCTTCTTGCGATTTGAACAAAGAAAAATACTTGTGTTGCCCTTCCTCGCCTATTCTTGGTGTCAAATTTTTGATGATTCTAGCTAGCCGGTATCGGCATTGTTTTTCAGCTTTATTCTCTTCTGCTTGAATCATTTTTTGCTTAATATTTTTTTGGTTTTTATTTTTAGCATATTTACACTTCACATTTCTGAAAATAAAGATATTTTGAATCACAAAATTAGCACACTAGAATTGACCGACCATATGTCTGCAAATCGCTTTTTCTGTAATTTCTTGTGTCTAGCTCAGTCAATTTTCTTCTGAATCACCACTCCCTTCTATTCTAAGATTCTCAAAAACATTGAAATAGCGTATGATTTGAATCATCGGATAAAAAATCAGTTTTGCACTGATATCCCTTTTTTTCTTTTT</canonical>
            <polymorphic>TATAGGGTAATTTTTCCTAGAATGTTTGTTTCCTTCAGGTCAAAATTCCCATGTTTAAAATTTTCGAATATTCTGGAAAGTCTTTCCAAATTTGCTTTCCCTATTGTTTAAATAGAATTCAACATTTTAGAGTTACTTCGTCATTATTATCATTTTTCTGGACAATGTGCTTCAAAACTTATCCCTTATTTTTCGGTTTTTTCTGAAAATTTCCGGAACATCTCATGACGTTCCCAGGCAATGTGACTCACGTTTTGTGAACCTATCCAAGAAATTTTTGTCCAGCTTCATTAATGATCCCGATTTCGGCTATAATCAAACACCATCCTATCAAGATTGGTAGTTCCACATAAGGTCAAATTCTGTACGTATTCGCCTCTTGTTCCTCCTTTTTTTCTCGATGTCAGAAAGCGAGAACTGCTTTATTTTCTCTCTGTCAGCCCTTCTAAGGGACAGCATATACATTATCTTGTTTCGCAAGTGGTGAACTGTGTCGTTTRATGGGACAAATAACAGGTCTGTCACCTTCTTCGCCTCCACGCACCTCCTTTCGAGTATTACAAATGTGTGTGTGCGTCTGTGTTACAGCTTCTTGCGATTTGAACAAAGAAAAATACTTGTGTTGCCCTTCCTCGCCTATTCTTGGTGTCAAATTTTTGATGATTCTAGCTAGCCGGTATCGGCATTGTTTTTCAGCTTTATTCTCTTCTGCTTGAATCATTTTTTGCTTAATATTTTTTTGGTTTTTATTTTTAGCATATTTACACTTCACATTTCTGAAAATAAAGATATTTTGAATCACAAAATTAGCACACTAGAATTGACCGACCATATGTCTGCAAATCGCTTTTTCTGTAATTTCTTGTGTCTAGCTCAGTCAATTTTCTTCTGAATCACCACTCCCTTCTATTCTAAGATTCTCAAAAACATTGAAATAGCGTATGATTTGAATCATCGGATAAAAAATCAGTTTTGCACTGATATCCCTTTTTTTCTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCTATCAAGATTGGTAGTTCC</pcr_primer_p1>
		<pcr_primer_p2>GCACACACACATTTGTAATACTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATCCTATCAAGATTGGTAGTTCCACATAAGGTCAAATTCTGTACGTATTCGCCTCTTGTTCCTCCTTTTTTTCTCGATGTCAGAAAGCGAGAACTGCTTTATTTTCTCTCTGTCAGCCCTTCTAAGGGACAGCATATACATTATCTTGTTTCGCAAGTGGTGAACTGTGTCGTTTGATGGGACAAATAACAGGTCTGTCACCTTCTTCGCCTCCACGCACCTCCTTTCGAGTATTACAAATGTGTGTGTGC</canonical_amplicon>
		<polymorphic_amplicon>ATCCTATCAAGATTGGTAGTTCCACATAAGGTCAAATTCTGTACGTATTCGCCTCTTGTTCCTCCTTTTTTTCTCGATGTCAGAAAGCGAGAACTGCTTTATTTTCTCTCTGTCAGCCCTTCTAAGGGACAGCATATACATTATCTTGTTTCGCAAGTGGTGAACTGTGTCGTTTRATGGGACAAATAACAGGTCTGTCACCTTCTTCGCCTCCACGCACCTCCTTTCGAGTATTACAAATGTGTGTGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7363</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>56284</contig_pos>
        <strand>+</strand>
        <context>TTATTCTCTT[C/T]TGCTTGAATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATGATTCTAGCTAGCCGGTATCGGCATTGTTTTTCAGCTTTATTCTCTT</left_flank>
        <right_flank>TGCTTGAATCATTTTTTGCTTAATATTTTTTTGGTTTTTATTTTTAGCAT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCGGAACATCTCATGACGTTCCCAGGCAATGTGACTCACGTTTTGTGAACCTATCCAAGAAATTTTTGTCCAGCTTCATTAATGATCCCGATTTCGGCTATAATCAAACACCATCCTATCAAGATTGGTAGTTCCACATAAGGTCAAATTCTGTACGTATTCGCCTCTTGTTCCTCCTTTTTTTCTCGATGTCAGAAAGCGAGAACTGCTTTATTTTCTCTCTGTCAGCCCTTCTAAGGGACAGCATATACATTATCTTGTTTCGCAAGTGGTGAACTGTGTCGTTTGATGGGACAAATAACAGGTCTGTCACCTTCTTCGCCTCCACGCACCTCCTTTCGAGTATTACAAATGTGTGTGTGCGTCTGTGTTACAGCTTCTTGCGATTTGAACAAAGAAAAATACTTGTGTTGCCCTTCCTCGCCTATTCTTGGTGTCAAATTTTTGATGATTCTAGCTAGCCGGTATCGGCATTGTTTTTCAGCTTTATTCTCTTCTGCTTGAATCATTTTTTGCTTAATATTTTTTTGGTTTTTATTTTTAGCATATTTACACTTCACATTTCTGAAAATAAAGATATTTTGAATCACAAAATTAGCACACTAGAATTGACCGACCATATGTCTGCAAATCGCTTTTTCTGTAATTTCTTGTGTCTAGCTCAGTCAATTTTCTTCTGAATCACCACTCCCTTCTATTCTAAGATTCTCAAAAACATTGAAATAGCGTATGATTTGAATCATCGGATAAAAAATCAGTTTTGCACTGATATCCCTTTTTTTCTTTTTTTGCGATGACACAAAAACGAGCTCTTCTTTCGAAAAAAGGCACTTGACGGCTGGCTAGATGGTCAATTTGTTTATTAGGGTTTGACGAGCTTTGCTTTCTGAATAGATACTCTTCTTTTTTTTCTACTGTGCACCAGTCCCCGTATGATTATTTCTCTCAAATAGACACATTTGGATGCGTGAATATGCGTGTAAGACCTATGTTTAAG</canonical>
            <polymorphic>TTTCCGGAACATCTCATGACGTTCCCAGGCAATGTGACTCACGTTTTGTGAACCTATCCAAGAAATTTTTGTCCAGCTTCATTAATGATCCCGATTTCGGCTATAATCAAACACCATCCTATCAAGATTGGTAGTTCCACATAAGGTCAAATTCTGTACGTATTCGCCTCTTGTTCCTCCTTTTTTTCTCGATGTCAGAAAGCGAGAACTGCTTTATTTTCTCTCTGTCAGCCCTTCTAAGGGACAGCATATACATTATCTTGTTTCGCAAGTGGTGAACTGTGTCGTTTGATGGGACAAATAACAGGTCTGTCACCTTCTTCGCCTCCACGCACCTCCTTTCGAGTATTACAAATGTGTGTGTGCGTCTGTGTTACAGCTTCTTGCGATTTGAACAAAGAAAAATACTTGTGTTGCCCTTCCTCGCCTATTCTTGGTGTCAAATTTTTGATGATTCTAGCTAGCCGGTATCGGCATTGTTTTTCAGCTTTATTCTCTTYTGCTTGAATCATTTTTTGCTTAATATTTTTTTGGTTTTTATTTTTAGCATATTTACACTTCACATTTCTGAAAATAAAGATATTTTGAATCACAAAATTAGCACACTAGAATTGACCGACCATATGTCTGCAAATCGCTTTTTCTGTAATTTCTTGTGTCTAGCTCAGTCAATTTTCTTCTGAATCACCACTCCCTTCTATTCTAAGATTCTCAAAAACATTGAAATAGCGTATGATTTGAATCATCGGATAAAAAATCAGTTTTGCACTGATATCCCTTTTTTTCTTTTTTTGCGATGACACAAAAACGAGCTCTTCTTTCGAAAAAAGGCACTTGACGGCTGGCTAGATGGTCAATTTGTTTATTAGGGTTTGACGAGCTTTGCTTTCTGAATAGATACTCTTCTTTTTTTTCTACTGTGCACCAGTCCCCGTATGATTATTTCTCTCAAATAGACACATTTGGATGCGTGAATATGCGTGTAAGACCTATGTTTAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTCCTTTCGAGTATTACAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTTTATTTTCAGAAATGTGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACCTCCTTTCGAGTATTACAAATGTGTGTGTGCGTCTGTGTTACAGCTTCTTGCGATTTGAACAAAGAAAAATACTTGTGTTGCCCTTCCTCGCCTATTCTTGGTGTCAAATTTTTGATGATTCTAGCTAGCCGGTATCGGCATTGTTTTTCAGCTTTATTCTCTTCTGCTTGAATCATTTTTTGCTTAATATTTTTTTGGTTTTTATTTTTAGCATATTTACACTTCACATTTCTGAAAATAAAG</canonical_amplicon>
		<polymorphic_amplicon>ACCTCCTTTCGAGTATTACAAATGTGTGTGTGCGTCTGTGTTACAGCTTCTTGCGATTTGAACAAAGAAAAATACTTGTGTTGCCCTTCCTCGCCTATTCTTGGTGTCAAATTTTTGATGATTCTAGCTAGCCGGTATCGGCATTGTTTTTCAGCTTTATTCTCTTYTGCTTGAATCATTTTTTGCTTAATATTTTTTTGGTTTTTATTTTTAGCATATTTACACTTCACATTTCTGAAAATAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7364</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>58787</contig_pos>
        <strand>+</strand>
        <context>TCATCCTGAT[C/T]ATGAAAACTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAACATTTTCAGCTTCCTAATGTTTTTCTTTTTCAGAAGTCATCCTGAT</left_flank>
        <right_flank>ATGAAAACTAGCTCCATCCACTGACAGCAAATTGGGAAAAACAAAGGTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCATCGGTCGTTCGTTTCCACCAGGCCCCAGTCAGTGCTTAGCGGTTTTCTCATCTGGCAGGTGGCTGGTGGTAGTCTTGCCGTTTGTTTTAATTGTTTCGGACATAAAGCAGCTTGATCGCGCCACACATTTTTATTCAAAACCAACCAAGTGGCTGTGTTGTTTTATCGCGGTTTATGATTTCAATATAATGAATGAACATTAGTCATTAGGATTTTGCTGGATATGCAAAACATTGTTCTTCATTATTTTCCATCAAAAAAACCACCACCCAGCTAAATGTAACATGTAGAAAATTCTTCATACACATCTTGTTGTTTCTAGATTATTCAATTAAACGTTATGACGAAAGTCTATCTCTATCTCTCGTTTGTTTTTCTTCCGTCCGTTTTCTCGCTTTTTCTTCGAAAAATTATTTCAATTTCTGTGTCCAACTGTGTTTCTGGTTTCAACATTTTCAGCTTCCTAATGTTTTTCTTTTTCAGAAGTCATCCTGATCATGAAAACTAGCTCCATCCACTGACAGCAAATTGGGAAAAACAAAGGTTTGTGTGCTATTTGTTGTTCCATTAGTTCTCCATCGTTCCCAATTATTATTCTGAGAACGTGCTGGGCTAGAAAGAGCAAAAATTGTCGGACATGATGAGAAGGGCCTGAAGATTTATGCCGCTTTCTATATCACTAAAAAAGGCAGGGAAAAAGGGAAAAGACACTTGAATTTGCTCCGTGACTCTTGAGGAGAAGCGCATATCCACTTGAATTCGACAAAACTCCTAGAATCTCATTTTTTTCGAGGAATGGAATTTTATTAACCTTAGTCGTTAGGTGTCATGATGAAATCGGAGGATTTGAGGAGTGGAGAAGAGTGAGGAGAACATGTTGTTCCCTCTTTACTCATATTTTTTGTGAGTGCGATCGAAAAGGTACCGTCGTGTTTTGCTGTTTTTTTCAGTGTTTTCAATTTCAATTTTAAACCTCAATGGTTTCAATAATCACATT</canonical>
            <polymorphic>CCATCGGTCGTTCGTTTCCACCAGGCCCCAGTCAGTGCTTAGCGGTTTTCTCATCTGGCAGGTGGCTGGTGGTAGTCTTGCCGTTTGTTTTAATTGTTTCGGACATAAAGCAGCTTGATCGCGCCACACATTTTTATTCAAAACCAACCAAGTGGCTGTGTTGTTTTATCGCGGTTTATGATTTCAATATAATGAATGAACATTAGTCATTAGGATTTTGCTGGATATGCAAAACATTGTTCTTCATTATTTTCCATCAAAAAAACCACCACCCAGCTAAATGTAACATGTAGAAAATTCTTCATACACATCTTGTTGTTTCTAGATTATTCAATTAAACGTTATGACGAAAGTCTATCTCTATCTCTCGTTTGTTTTTCTTCCGTCCGTTTTCTCGCTTTTTCTTCGAAAAATTATTTCAATTTCTGTGTCCAACTGTGTTTCTGGTTTCAACATTTTCAGCTTCCTAATGTTTTTCTTTTTCAGAAGTCATCCTGATYATGAAAACTAGCTCCATCCACTGACAGCAAATTGGGAAAAACAAAGGTTTGTGTGCTATTTGTTGTTCCATTAGTTCTCCATCGTTCCCAATTATTATTCTGAGAACGTGCTGGGCTAGAAAGAGCAAAAATTGTCGGACATGATGAGAAGGGCCTGAAGATTTATGCCGCTTTCTATATCACTAAAAAAGGCAGGGAAAAAGGGAAAAGACACTTGAATTTGCTCCGTGACTCTTGAGGAGAAGCGCATATCCACTTGAATTCGACAAAACTCCTAGAATCTCATTTTTTTCGAGGAATGGAATTTTATTAACCTTAGTCGTTAGGTGTCATGATGAAATCGGAGGATTTGAGGAGTGGAGAAGAGTGAGGAGAACATGTTGTTCCCTCTTTACTCATATTTTTTGTGAGTGCGATCGAAAAGGTACCGTCGTGTTTTGCTGTTTTTTTCAGTGTTTTCAATTTCAATTTTAAACCTCAATGGTTTCAATAATCACATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>418 380 116 86</canonical_bands>
                <polymorphic_bands>798 116 86</polymorphic_bands>
            </assay>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 331 170</canonical_bands>
                <polymorphic_bands>830 170</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>287 213 191 140 123 46</canonical_bands>
                <polymorphic_bands>353 287 191 123 46</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>322 234 172 169 97 6</canonical_bands>
                <polymorphic_bands>322 240 172 169 97</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATTAAACGTTATGACGAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GAACTAATGGAACAACAAATAGC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAATTAAACGTTATGACGAAAGTCTATCTCTATCTCTCGTTTGTTTTTCTTCCGTCCGTTTTCTCGCTTTTTCTTCGAAAAATTATTTCAATTTCTGTGTCCAACTGTGTTTCTGGTTTCAACATTTTCAGCTTCCTAATGTTTTTCTTTTTCAGAAGTCATCCTGATCATGAAAACTAGCTCCATCCACTGACAGCAAATTGGGAAAAACAAAGGTTTGTGTGCTATTTGTTGTTCCATTAGTTC</canonical_amplicon>
		<polymorphic_amplicon>CAATTAAACGTTATGACGAAAGTCTATCTCTATCTCTCGTTTGTTTTTCTTCCGTCCGTTTTCTCGCTTTTTCTTCGAAAAATTATTTCAATTTCTGTGTCCAACTGTGTTTCTGGTTTCAACATTTTCAGCTTCCTAATGTTTTTCTTTTTCAGAAGTCATCCTGATYATGAAAACTAGCTCCATCCACTGACAGCAAATTGGGAAAAACAAAGGTTTGTGTGCTATTTGTTGTTCCATTAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7365</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>58764</contig_pos>
        <strand>+</strand>
        <context>CTAATGTTTT[C/T]CTTTTTCAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTGTCCAACTGTGTTTCTGGTTTCAACATTTTCAGCTTCCTAATGTTTT</left_flank>
        <right_flank>CTTTTTCAGAAGTCATCCTGATCATGAAAACTAGCTCCATCCACTGACAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGATTGATGTCAAAGTATTCCCCATCGGTCGTTCGTTTCCACCAGGCCCCAGTCAGTGCTTAGCGGTTTTCTCATCTGGCAGGTGGCTGGTGGTAGTCTTGCCGTTTGTTTTAATTGTTTCGGACATAAAGCAGCTTGATCGCGCCACACATTTTTATTCAAAACCAACCAAGTGGCTGTGTTGTTTTATCGCGGTTTATGATTTCAATATAATGAATGAACATTAGTCATTAGGATTTTGCTGGATATGCAAAACATTGTTCTTCATTATTTTCCATCAAAAAAACCACCACCCAGCTAAATGTAACATGTAGAAAATTCTTCATACACATCTTGTTGTTTCTAGATTATTCAATTAAACGTTATGACGAAAGTCTATCTCTATCTCTCGTTTGTTTTTCTTCCGTCCGTTTTCTCGCTTTTTCTTCGAAAAATTATTTCAATTTCTGTGTCCAACTGTGTTTCTGGTTTCAACATTTTCAGCTTCCTAATGTTTTTCTTTTTCAGAAGTCATCCTGATCATGAAAACTAGCTCCATCCACTGACAGCAAATTGGGAAAAACAAAGGTTTGTGTGCTATTTGTTGTTCCATTAGTTCTCCATCGTTCCCAATTATTATTCTGAGAACGTGCTGGGCTAGAAAGAGCAAAAATTGTCGGACATGATGAGAAGGGCCTGAAGATTTATGCCGCTTTCTATATCACTAAAAAAGGCAGGGAAAAAGGGAAAAGACACTTGAATTTGCTCCGTGACTCTTGAGGAGAAGCGCATATCCACTTGAATTCGACAAAACTCCTAGAATCTCATTTTTTTCGAGGAATGGAATTTTATTAACCTTAGTCGTTAGGTGTCATGATGAAATCGGAGGATTTGAGGAGTGGAGAAGAGTGAGGAGAACATGTTGTTCCCTCTTTACTCATATTTTTTGTGAGTGCGATCGAAAAGGTACCGTCGTGTTTTGCTGTTTTTTTCAGTGTTTTCAATTTCAATTTTAAACC</canonical>
            <polymorphic>ATTGATTGATGTCAAAGTATTCCCCATCGGTCGTTCGTTTCCACCAGGCCCCAGTCAGTGCTTAGCGGTTTTCTCATCTGGCAGGTGGCTGGTGGTAGTCTTGCCGTTTGTTTTAATTGTTTCGGACATAAAGCAGCTTGATCGCGCCACACATTTTTATTCAAAACCAACCAAGTGGCTGTGTTGTTTTATCGCGGTTTATGATTTCAATATAATGAATGAACATTAGTCATTAGGATTTTGCTGGATATGCAAAACATTGTTCTTCATTATTTTCCATCAAAAAAACCACCACCCAGCTAAATGTAACATGTAGAAAATTCTTCATACACATCTTGTTGTTTCTAGATTATTCAATTAAACGTTATGACGAAAGTCTATCTCTATCTCTCGTTTGTTTTTCTTCCGTCCGTTTTCTCGCTTTTTCTTCGAAAAATTATTTCAATTTCTGTGTCCAACTGTGTTTCTGGTTTCAACATTTTCAGCTTCCTAATGTTTTYCTTTTTCAGAAGTCATCCTGATCATGAAAACTAGCTCCATCCACTGACAGCAAATTGGGAAAAACAAAGGTTTGTGTGCTATTTGTTGTTCCATTAGTTCTCCATCGTTCCCAATTATTATTCTGAGAACGTGCTGGGCTAGAAAGAGCAAAAATTGTCGGACATGATGAGAAGGGCCTGAAGATTTATGCCGCTTTCTATATCACTAAAAAAGGCAGGGAAAAAGGGAAAAGACACTTGAATTTGCTCCGTGACTCTTGAGGAGAAGCGCATATCCACTTGAATTCGACAAAACTCCTAGAATCTCATTTTTTTCGAGGAATGGAATTTTATTAACCTTAGTCGTTAGGTGTCATGATGAAATCGGAGGATTTGAGGAGTGGAGAAGAGTGAGGAGAACATGTTGTTCCCTCTTTACTCATATTTTTTGTGAGTGCGATCGAAAAGGTACCGTCGTGTTTTGCTGTTTTTTTCAGTGTTTTCAATTTCAATTTTAAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTAAACGTTATGACGAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GAACTAATGGAACAACAAATAGC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAATTAAACGTTATGACGAAAGTCTATCTCTATCTCTCGTTTGTTTTTCTTCCGTCCGTTTTCTCGCTTTTTCTTCGAAAAATTATTTCAATTTCTGTGTCCAACTGTGTTTCTGGTTTCAACATTTTCAGCTTCCTAATGTTTTTCTTTTTCAGAAGTCATCCTGATCATGAAAACTAGCTCCATCCACTGACAGCAAATTGGGAAAAACAAAGGTTTGTGTGCTATTTGTTGTTCCATTAGTTC</canonical_amplicon>
		<polymorphic_amplicon>CAATTAAACGTTATGACGAAAGTCTATCTCTATCTCTCGTTTGTTTTTCTTCCGTCCGTTTTCTCGCTTTTTCTTCGAAAAATTATTTCAATTTCTGTGTCCAACTGTGTTTCTGGTTTCAACATTTTCAGCTTCCTAATGTTTTYCTTTTTCAGAAGTCATCCTGATCATGAAAACTAGCTCCATCCACTGACAGCAAATTGGGAAAAACAAAGGTTTGTGTGCTATTTGTTGTTCCATTAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7366</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>58581</contig_pos>
        <strand>+</strand>
        <context>TAACATGTAG[A/G]AAATTCTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATTATTTTCCATCAAAAAAACCACCACCCAGCTAAATGTAACATGTAG</left_flank>
        <right_flank>AAATTCTTCATACACATCTTGTTGTTTCTAGATTATTCAATTAAACGTTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGACAAGAAGTCTCGGGTAGTAGCGAAAACTACTACCGTAATAGATCTTCTGTCTTCCTTCTTCCACTTCAATTACACCCTGTCTGCTTGGTGGAGCTCTACTGGCTCCATTTTCTTTCCGGTTCCGACTCCTGCTCCACTTTTCAACGACGTCGTCGTTGTCTAAGCGTTAGTTTCCGAAGATTGATTGATGTCAAAGTATTCCCCATCGGTCGTTCGTTTCCACCAGGCCCCAGTCAGTGCTTAGCGGTTTTCTCATCTGGCAGGTGGCTGGTGGTAGTCTTGCCGTTTGTTTTAATTGTTTCGGACATAAAGCAGCTTGATCGCGCCACACATTTTTATTCAAAACCAACCAAGTGGCTGTGTTGTTTTATCGCGGTTTATGATTTCAATATAATGAATGAACATTAGTCATTAGGATTTTGCTGGATATGCAAAACATTGTTCTTCATTATTTTCCATCAAAAAAACCACCACCCAGCTAAATGTAACATGTAGAAAATTCTTCATACACATCTTGTTGTTTCTAGATTATTCAATTAAACGTTATGACGAAAGTCTATCTCTATCTCTCGTTTGTTTTTCTTCCGTCCGTTTTCTCGCTTTTTCTTCGAAAAATTATTTCAATTTCTGTGTCCAACTGTGTTTCTGGTTTCAACATTTTCAGCTTCCTAATGTTTTTCTTTTTCAGAAGTCATCCTGATCATGAAAACTAGCTCCATCCACTGACAGCAAATTGGGAAAAACAAAGGTTTGTGTGCTATTTGTTGTTCCATTAGTTCTCCATCGTTCCCAATTATTATTCTGAGAACGTGCTGGGCTAGAAAGAGCAAAAATTGTCGGACATGATGAGAAGGGCCTGAAGATTTATGCCGCTTTCTATATCACTAAAAAAGGCAGGGAAAAAGGGAAAAGACACTTGAATTTGCTCCGTGACTCTTGAGGAGAAGCGCATATCCACTTGAATTCGACAAAACTCCTAGAATCTCATTTTTTTCG</canonical>
            <polymorphic>GAGACAAGAAGTCTCGGGTAGTAGCGAAAACTACTACCGTAATAGATCTTCTGTCTTCCTTCTTCCACTTCAATTACACCCTGTCTGCTTGGTGGAGCTCTACTGGCTCCATTTTCTTTCCGGTTCCGACTCCTGCTCCACTTTTCAACGACGTCGTCGTTGTCTAAGCGTTAGTTTCCGAAGATTGATTGATGTCAAAGTATTCCCCATCGGTCGTTCGTTTCCACCAGGCCCCAGTCAGTGCTTAGCGGTTTTCTCATCTGGCAGGTGGCTGGTGGTAGTCTTGCCGTTTGTTTTAATTGTTTCGGACATAAAGCAGCTTGATCGCGCCACACATTTTTATTCAAAACCAACCAAGTGGCTGTGTTGTTTTATCGCGGTTTATGATTTCAATATAATGAATGAACATTAGTCATTAGGATTTTGCTGGATATGCAAAACATTGTTCTTCATTATTTTCCATCAAAAAAACCACCACCCAGCTAAATGTAACATGTAGRAAATTCTTCATACACATCTTGTTGTTTCTAGATTATTCAATTAAACGTTATGACGAAAGTCTATCTCTATCTCTCGTTTGTTTTTCTTCCGTCCGTTTTCTCGCTTTTTCTTCGAAAAATTATTTCAATTTCTGTGTCCAACTGTGTTTCTGGTTTCAACATTTTCAGCTTCCTAATGTTTTTCTTTTTCAGAAGTCATCCTGATCATGAAAACTAGCTCCATCCACTGACAGCAAATTGGGAAAAACAAAGGTTTGTGTGCTATTTGTTGTTCCATTAGTTCTCCATCGTTCCCAATTATTATTCTGAGAACGTGCTGGGCTAGAAAGAGCAAAAATTGTCGGACATGATGAGAAGGGCCTGAAGATTTATGCCGCTTTCTATATCACTAAAAAAGGCAGGGAAAAAGGGAAAAGACACTTGAATTTGCTCCGTGACTCTTGAGGAGAAGCGCATATCCACTTGAATTCGACAAAACTCCTAGAATCTCATTTTTTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTATTCAAAACCAACCAAGT</pcr_primer_p1>
		<pcr_primer_p2>GAAAAACAAACGAGAGATAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTATTCAAAACCAACCAAGTGGCTGTGTTGTTTTATCGCGGTTTATGATTTCAATATAATGAATGAACATTAGTCATTAGGATTTTGCTGGATATGCAAAACATTGTTCTTCATTATTTTCCATCAAAAAAACCACCACCCAGCTAAATGTAACATGTAGAAAATTCTTCATACACATCTTGTTGTTTCTAGATTATTCAATTAAACGTTATGACGAAAGTCTATCTCTATCTCTCGTTTGTTTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTATTCAAAACCAACCAAGTGGCTGTGTTGTTTTATCGCGGTTTATGATTTCAATATAATGAATGAACATTAGTCATTAGGATTTTGCTGGATATGCAAAACATTGTTCTTCATTATTTTCCATCAAAAAAACCACCACCCAGCTAAATGTAACATGTAGRAAATTCTTCATACACATCTTGTTGTTTCTAGATTATTCAATTAAACGTTATGACGAAAGTCTATCTCTATCTCTCGTTTGTTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7367</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>58544</contig_pos>
        <strand>+</strand>
        <context>YTATTTTCCA[C/T]CAAAAAAACC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATTAGGATTTTGCTGGATATGCAAAACATTGTTCTTCATTATTTTCCA</left_flank>
        <right_flank>CAAAAAAACCACCACCCAGCTAAATGTAACATGTAGAAAATTCTTCATAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCGTCTTCTCATTCAGAATCTCAAAATGTAGACCGGAGACAAGAAGTCTCGGGTAGTAGCGAAAACTACTACCGTAATAGATCTTCTGTCTTCCTTCTTCCACTTCAATTACACCCTGTCTGCTTGGTGGAGCTCTACTGGCTCCATTTTCTTTCCGGTTCCGACTCCTGCTCCACTTTTCAACGACGTCGTCGTTGTCTAAGCGTTAGTTTCCGAAGATTGATTGATGTCAAAGTATTCCCCATCGGTCGTTCGTTTCCACCAGGCCCCAGTCAGTGCTTAGCGGTTTTCTCATCTGGCAGGTGGCTGGTGGTAGTCTTGCCGTTTGTTTTAATTGTTTCGGACATAAAGCAGCTTGATCGCGCCACACATTTTTATTCAAAACCAACCAAGTGGCTGTGTTGTTTTATCGCGGTTTATGATTTCAATATAATGAATGAACATTAGTCATTAGGATTTTGCTGGATATGCAAAACATTGTTCTTCATTATTTTCCATCAAAAAAACCACCACCCAGCTAAATGTAACATGTAGAAAATTCTTCATACACATCTTGTTGTTTCTAGATTATTCAATTAAACGTTATGACGAAAGTCTATCTCTATCTCTCGTTTGTTTTTCTTCCGTCCGTTTTCTCGCTTTTTCTTCGAAAAATTATTTCAATTTCTGTGTCCAACTGTGTTTCTGGTTTCAACATTTTCAGCTTCCTAATGTTTTTCTTTTTCAGAAGTCATCCTGATCATGAAAACTAGCTCCATCCACTGACAGCAAATTGGGAAAAACAAAGGTTTGTGTGCTATTTGTTGTTCCATTAGTTCTCCATCGTTCCCAATTATTATTCTGAGAACGTGCTGGGCTAGAAAGAGCAAAAATTGTCGGACATGATGAGAAGGGCCTGAAGATTTATGCCGCTTTCTATATCACTAAAAAAGGCAGGGAAAAAGGGAAAAGACACTTGAATTTGCTCCGTGACTCTTGAGGAGAAGCGCATATCCACT</canonical>
            <polymorphic>CTTCGTCTTCTCATTCAGAATCTCAAAATGTAGACCGGAGACAAGAAGTCTCGGGTAGTAGCGAAAACTACTACCGTAATAGATCTTCTGTCTTCCTTCTTCCACTTCAATTACACCCTGTCTGCTTGGTGGAGCTCTACTGGCTCCATTTTCTTTCCGGTTCCGACTCCTGCTCCACTTTTCAACGACGTCGTCGTTGTCTAAGCGTTAGTTTCCGAAGATTGATTGATGTCAAAGTATTCCCCATCGGTCGTTCGTTTCCACCAGGCCCCAGTCAGTGCTTAGCGGTTTTCTCATCTGGCAGGTGGCTGGTGGTAGTCTTGCCGTTTGTTTTAATTGTTTCGGACATAAAGCAGCTTGATCGCGCCACACATTTTTATTCAAAACCAACCAAGTGGCTGTGTTGTTTTATCGCGGTTTATGATTTCAATATAATGAATGAACATTAGTCATTAGGATTTTGCTGGATATGCAAAACATTGTTCTTCATTATTTTCCAYCAAAAAAACCACCACCCAGCTAAATGTAACATGTAGAAAATTCTTCATACACATCTTGTTGTTTCTAGATTATTCAATTAAACGTTATGACGAAAGTCTATCTCTATCTCTCGTTTGTTTTTCTTCCGTCCGTTTTCTCGCTTTTTCTTCGAAAAATTATTTCAATTTCTGTGTCCAACTGTGTTTCTGGTTTCAACATTTTCAGCTTCCTAATGTTTTTCTTTTTCAGAAGTCATCCTGATCATGAAAACTAGCTCCATCCACTGACAGCAAATTGGGAAAAACAAAGGTTTGTGTGCTATTTGTTGTTCCATTAGTTCTCCATCGTTCCCAATTATTATTCTGAGAACGTGCTGGGCTAGAAAGAGCAAAAATTGTCGGACATGATGAGAAGGGCCTGAAGATTTATGCCGCTTTCTATATCACTAAAAAAGGCAGGGAAAAAGGGAAAAGACACTTGAATTTGCTCCGTGACTCTTGAGGAGAAGCGCATATCCACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTATTCAAAACCAACCAAGT</pcr_primer_p1>
		<pcr_primer_p2>GAAAAACAAACGAGAGATAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTATTCAAAACCAACCAAGTGGCTGTGTTGTTTTATCGCGGTTTATGATTTCAATATAATGAATGAACATTAGTCATTAGGATTTTGCTGGATATGCAAAACATTGTTCTTCATTATTTTCCATCAAAAAAACCACCACCCAGCTAAATGTAACATGTAGAAAATTCTTCATACACATCTTGTTGTTTCTAGATTATTCAATTAAACGTTATGACGAAAGTCTATCTCTATCTCTCGTTTGTTTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTATTCAAAACCAACCAAGTGGCTGTGTTGTTTTATCGCGGTTTATGATTTCAATATAATGAATGAACATTAGTCATTAGGATTTTGCTGGATATGCAAAACATTGTTCTTCATTATTTTCCAYCAAAAAAACCACCACCCAGCTAAATGTAACATGTAGAAAATTCTTCATACACATCTTGTTGTTTCTAGATTATTCAATTAAACGTTATGACGAAAGTCTATCTCTATCTCTCGTTTGTTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7368</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>58534</contig_pos>
        <strand>+</strand>
        <context>TTGTTCTTCA[C/T]TATTTTCCAY</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAACATTAGTCATTAGGATTTTGCTGGATATGCAAAACATTGTTCTTCA</left_flank>
        <right_flank>TATTTTCCATCAAAAAAACCACCACCCAGCTAAATGTAACATGTAGAAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGAAGCTTCTTCGTCTTCTCATTCAGAATCTCAAAATGTAGACCGGAGACAAGAAGTCTCGGGTAGTAGCGAAAACTACTACCGTAATAGATCTTCTGTCTTCCTTCTTCCACTTCAATTACACCCTGTCTGCTTGGTGGAGCTCTACTGGCTCCATTTTCTTTCCGGTTCCGACTCCTGCTCCACTTTTCAACGACGTCGTCGTTGTCTAAGCGTTAGTTTCCGAAGATTGATTGATGTCAAAGTATTCCCCATCGGTCGTTCGTTTCCACCAGGCCCCAGTCAGTGCTTAGCGGTTTTCTCATCTGGCAGGTGGCTGGTGGTAGTCTTGCCGTTTGTTTTAATTGTTTCGGACATAAAGCAGCTTGATCGCGCCACACATTTTTATTCAAAACCAACCAAGTGGCTGTGTTGTTTTATCGCGGTTTATGATTTCAATATAATGAATGAACATTAGTCATTAGGATTTTGCTGGATATGCAAAACATTGTTCTTCATTATTTTCCATCAAAAAAACCACCACCCAGCTAAATGTAACATGTAGAAAATTCTTCATACACATCTTGTTGTTTCTAGATTATTCAATTAAACGTTATGACGAAAGTCTATCTCTATCTCTCGTTTGTTTTTCTTCCGTCCGTTTTCTCGCTTTTTCTTCGAAAAATTATTTCAATTTCTGTGTCCAACTGTGTTTCTGGTTTCAACATTTTCAGCTTCCTAATGTTTTTCTTTTTCAGAAGTCATCCTGATCATGAAAACTAGCTCCATCCACTGACAGCAAATTGGGAAAAACAAAGGTTTGTGTGCTATTTGTTGTTCCATTAGTTCTCCATCGTTCCCAATTATTATTCTGAGAACGTGCTGGGCTAGAAAGAGCAAAAATTGTCGGACATGATGAGAAGGGCCTGAAGATTTATGCCGCTTTCTATATCACTAAAAAAGGCAGGGAAAAAGGGAAAAGACACTTGAATTTGCTCCGTGACTCTTGAGGAGAAGCG</canonical>
            <polymorphic>ACTGAAGCTTCTTCGTCTTCTCATTCAGAATCTCAAAATGTAGACCGGAGACAAGAAGTCTCGGGTAGTAGCGAAAACTACTACCGTAATAGATCTTCTGTCTTCCTTCTTCCACTTCAATTACACCCTGTCTGCTTGGTGGAGCTCTACTGGCTCCATTTTCTTTCCGGTTCCGACTCCTGCTCCACTTTTCAACGACGTCGTCGTTGTCTAAGCGTTAGTTTCCGAAGATTGATTGATGTCAAAGTATTCCCCATCGGTCGTTCGTTTCCACCAGGCCCCAGTCAGTGCTTAGCGGTTTTCTCATCTGGCAGGTGGCTGGTGGTAGTCTTGCCGTTTGTTTTAATTGTTTCGGACATAAAGCAGCTTGATCGCGCCACACATTTTTATTCAAAACCAACCAAGTGGCTGTGTTGTTTTATCGCGGTTTATGATTTCAATATAATGAATGAACATTAGTCATTAGGATTTTGCTGGATATGCAAAACATTGTTCTTCAYTATTTTCCATCAAAAAAACCACCACCCAGCTAAATGTAACATGTAGAAAATTCTTCATACACATCTTGTTGTTTCTAGATTATTCAATTAAACGTTATGACGAAAGTCTATCTCTATCTCTCGTTTGTTTTTCTTCCGTCCGTTTTCTCGCTTTTTCTTCGAAAAATTATTTCAATTTCTGTGTCCAACTGTGTTTCTGGTTTCAACATTTTCAGCTTCCTAATGTTTTTCTTTTTCAGAAGTCATCCTGATCATGAAAACTAGCTCCATCCACTGACAGCAAATTGGGAAAAACAAAGGTTTGTGTGCTATTTGTTGTTCCATTAGTTCTCCATCGTTCCCAATTATTATTCTGAGAACGTGCTGGGCTAGAAAGAGCAAAAATTGTCGGACATGATGAGAAGGGCCTGAAGATTTATGCCGCTTTCTATATCACTAAAAAAGGCAGGGAAAAAGGGAAAAGACACTTGAATTTGCTCCGTGACTCTTGAGGAGAAGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTATTCAAAACCAACCAAGT</pcr_primer_p1>
		<pcr_primer_p2>GAAAAACAAACGAGAGATAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTATTCAAAACCAACCAAGTGGCTGTGTTGTTTTATCGCGGTTTATGATTTCAATATAATGAATGAACATTAGTCATTAGGATTTTGCTGGATATGCAAAACATTGTTCTTCATTATTTTCCATCAAAAAAACCACCACCCAGCTAAATGTAACATGTAGAAAATTCTTCATACACATCTTGTTGTTTCTAGATTATTCAATTAAACGTTATGACGAAAGTCTATCTCTATCTCTCGTTTGTTTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTATTCAAAACCAACCAAGTGGCTGTGTTGTTTTATCGCGGTTTATGATTTCAATATAATGAATGAACATTAGTCATTAGGATTTTGCTGGATATGCAAAACATTGTTCTTCAYTATTTTCCATCAAAAAAACCACCACCCAGCTAAATGTAACATGTAGAAAATTCTTCATACACATCTTGTTGTTTCTAGATTATTCAATTAAACGTTATGACGAAAGTCTATCTCTATCTCTCGTTTGTTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7369</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>58497</contig_pos>
        <strand>+</strand>
        <context>ACATTAGTCA[G/T]TAGGATTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTGTTTTATCGCGGTTTATGATTTCAATATAATGAATGAACATTAGTCA</left_flank>
        <right_flank>TAGGATTTTGCTGGATATGCAAAACATTGTTCTTCATTATTTTCCATCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTTTTCAATCATTTGACTCGAACTAAGACACCTAACTGAAGCTTCTTCGTCTTCTCATTCAGAATCTCAAAATGTAGACCGGAGACAAGAAGTCTCGGGTAGTAGCGAAAACTACTACCGTAATAGATCTTCTGTCTTCCTTCTTCCACTTCAATTACACCCTGTCTGCTTGGTGGAGCTCTACTGGCTCCATTTTCTTTCCGGTTCCGACTCCTGCTCCACTTTTCAACGACGTCGTCGTTGTCTAAGCGTTAGTTTCCGAAGATTGATTGATGTCAAAGTATTCCCCATCGGTCGTTCGTTTCCACCAGGCCCCAGTCAGTGCTTAGCGGTTTTCTCATCTGGCAGGTGGCTGGTGGTAGTCTTGCCGTTTGTTTTAATTGTTTCGGACATAAAGCAGCTTGATCGCGCCACACATTTTTATTCAAAACCAACCAAGTGGCTGTGTTGTTTTATCGCGGTTTATGATTTCAATATAATGAATGAACATTAGTCATTAGGATTTTGCTGGATATGCAAAACATTGTTCTTCATTATTTTCCATCAAAAAAACCACCACCCAGCTAAATGTAACATGTAGAAAATTCTTCATACACATCTTGTTGTTTCTAGATTATTCAATTAAACGTTATGACGAAAGTCTATCTCTATCTCTCGTTTGTTTTTCTTCCGTCCGTTTTCTCGCTTTTTCTTCGAAAAATTATTTCAATTTCTGTGTCCAACTGTGTTTCTGGTTTCAACATTTTCAGCTTCCTAATGTTTTTCTTTTTCAGAAGTCATCCTGATCATGAAAACTAGCTCCATCCACTGACAGCAAATTGGGAAAAACAAAGGTTTGTGTGCTATTTGTTGTTCCATTAGTTCTCCATCGTTCCCAATTATTATTCTGAGAACGTGCTGGGCTAGAAAGAGCAAAAATTGTCGGACATGATGAGAAGGGCCTGAAGATTTATGCCGCTTTCTATATCACTAAAAAAGGCAGGGAAAAAGGGAAAAG</canonical>
            <polymorphic>TTGTTTTTCAATCATTTGACTCGAACTAAGACACCTAACTGAAGCTTCTTCGTCTTCTCATTCAGAATCTCAAAATGTAGACCGGAGACAAGAAGTCTCGGGTAGTAGCGAAAACTACTACCGTAATAGATCTTCTGTCTTCCTTCTTCCACTTCAATTACACCCTGTCTGCTTGGTGGAGCTCTACTGGCTCCATTTTCTTTCCGGTTCCGACTCCTGCTCCACTTTTCAACGACGTCGTCGTTGTCTAAGCGTTAGTTTCCGAAGATTGATTGATGTCAAAGTATTCCCCATCGGTCGTTCGTTTCCACCAGGCCCCAGTCAGTGCTTAGCGGTTTTCTCATCTGGCAGGTGGCTGGTGGTAGTCTTGCCGTTTGTTTTAATTGTTTCGGACATAAAGCAGCTTGATCGCGCCACACATTTTTATTCAAAACCAACCAAGTGGCTGTGTTGTTTTATCGCGGTTTATGATTTCAATATAATGAATGAACATTAGTCAKTAGGATTTTGCTGGATATGCAAAACATTGTTCTTCATTATTTTCCATCAAAAAAACCACCACCCAGCTAAATGTAACATGTAGAAAATTCTTCATACACATCTTGTTGTTTCTAGATTATTCAATTAAACGTTATGACGAAAGTCTATCTCTATCTCTCGTTTGTTTTTCTTCCGTCCGTTTTCTCGCTTTTTCTTCGAAAAATTATTTCAATTTCTGTGTCCAACTGTGTTTCTGGTTTCAACATTTTCAGCTTCCTAATGTTTTTCTTTTTCAGAAGTCATCCTGATCATGAAAACTAGCTCCATCCACTGACAGCAAATTGGGAAAAACAAAGGTTTGTGTGCTATTTGTTGTTCCATTAGTTCTCCATCGTTCCCAATTATTATTCTGAGAACGTGCTGGGCTAGAAAGAGCAAAAATTGTCGGACATGATGAGAAGGGCCTGAAGATTTATGCCGCTTTCTATATCACTAAAAAAGGCAGGGAAAAAGGGAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTATTCAAAACCAACCAAGT</pcr_primer_p1>
		<pcr_primer_p2>GAAAAACAAACGAGAGATAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTATTCAAAACCAACCAAGTGGCTGTGTTGTTTTATCGCGGTTTATGATTTCAATATAATGAATGAACATTAGTCATTAGGATTTTGCTGGATATGCAAAACATTGTTCTTCATTATTTTCCATCAAAAAAACCACCACCCAGCTAAATGTAACATGTAGAAAATTCTTCATACACATCTTGTTGTTTCTAGATTATTCAATTAAACGTTATGACGAAAGTCTATCTCTATCTCTCGTTTGTTTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTATTCAAAACCAACCAAGTGGCTGTGTTGTTTTATCGCGGTTTATGATTTCAATATAATGAATGAACATTAGTCAKTAGGATTTTGCTGGATATGCAAAACATTGTTCTTCATTATTTTCCATCAAAAAAACCACCACCCAGCTAAATGTAACATGTAGAAAATTCTTCATACACATCTTGTTGTTTCTAGATTATTCAATTAAACGTTATGACGAAAGTCTATCTCTATCTCTCGTTTGTTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7370</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>58446</contig_pos>
        <strand>+</strand>
        <context>CAAGTGGCTG[A/T]GTTGTTTTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGCAGCTTGATCGCGCCACACATTTTTATTCAAAACCAACCAAGTGGCTG</left_flank>
        <right_flank>GTTGTTTTATCGCGGTTTATGATTTCAATATAATGAATGAACATTAGTCA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTGATGGCTTCATGCACAAATATCTTCTGATTTGGCTAATTTTGGAATCTTGTTTTTCAATCATTTGACTCGAACTAAGACACCTAACTGAAGCTTCTTCGTCTTCTCATTCAGAATCTCAAAATGTAGACCGGAGACAAGAAGTCTCGGGTAGTAGCGAAAACTACTACCGTAATAGATCTTCTGTCTTCCTTCTTCCACTTCAATTACACCCTGTCTGCTTGGTGGAGCTCTACTGGCTCCATTTTCTTTCCGGTTCCGACTCCTGCTCCACTTTTCAACGACGTCGTCGTTGTCTAAGCGTTAGTTTCCGAAGATTGATTGATGTCAAAGTATTCCCCATCGGTCGTTCGTTTCCACCAGGCCCCAGTCAGTGCTTAGCGGTTTTCTCATCTGGCAGGTGGCTGGTGGTAGTCTTGCCGTTTGTTTTAATTGTTTCGGACATAAAGCAGCTTGATCGCGCCACACATTTTTATTCAAAACCAACCAAGTGGCTGTGTTGTTTTATCGCGGTTTATGATTTCAATATAATGAATGAACATTAGTCATTAGGATTTTGCTGGATATGCAAAACATTGTTCTTCATTATTTTCCATCAAAAAAACCACCACCCAGCTAAATGTAACATGTAGAAAATTCTTCATACACATCTTGTTGTTTCTAGATTATTCAATTAAACGTTATGACGAAAGTCTATCTCTATCTCTCGTTTGTTTTTCTTCCGTCCGTTTTCTCGCTTTTTCTTCGAAAAATTATTTCAATTTCTGTGTCCAACTGTGTTTCTGGTTTCAACATTTTCAGCTTCCTAATGTTTTTCTTTTTCAGAAGTCATCCTGATCATGAAAACTAGCTCCATCCACTGACAGCAAATTGGGAAAAACAAAGGTTTGTGTGCTATTTGTTGTTCCATTAGTTCTCCATCGTTCCCAATTATTATTCTGAGAACGTGCTGGGCTAGAAAGAGCAAAAATTGTCGGACATGATGAGAAGGGCCTGAA</canonical>
            <polymorphic>GGTTGATGGCTTCATGCACAAATATCTTCTGATTTGGCTAATTTTGGAATCTTGTTTTTCAATCATTTGACTCGAACTAAGACACCTAACTGAAGCTTCTTCGTCTTCTCATTCAGAATCTCAAAATGTAGACCGGAGACAAGAAGTCTCGGGTAGTAGCGAAAACTACTACCGTAATAGATCTTCTGTCTTCCTTCTTCCACTTCAATTACACCCTGTCTGCTTGGTGGAGCTCTACTGGCTCCATTTTCTTTCCGGTTCCGACTCCTGCTCCACTTTTCAACGACGTCGTCGTTGTCTAAGCGTTAGTTTCCGAAGATTGATTGATGTCAAAGTATTCCCCATCGGTCGTTCGTTTCCACCAGGCCCCAGTCAGTGCTTAGCGGTTTTCTCATCTGGCAGGTGGCTGGTGGTAGTCTTGCCGTTTGTTTTAATTGTTTCGGACATAAAGCAGCTTGATCGCGCCACACATTTTTATTCAAAACCAACCAAGTGGCTGWGTTGTTTTATCGCGGTTTATGATTTCAATATAATGAATGAACATTAGTCATTAGGATTTTGCTGGATATGCAAAACATTGTTCTTCATTATTTTCCATCAAAAAAACCACCACCCAGCTAAATGTAACATGTAGAAAATTCTTCATACACATCTTGTTGTTTCTAGATTATTCAATTAAACGTTATGACGAAAGTCTATCTCTATCTCTCGTTTGTTTTTCTTCCGTCCGTTTTCTCGCTTTTTCTTCGAAAAATTATTTCAATTTCTGTGTCCAACTGTGTTTCTGGTTTCAACATTTTCAGCTTCCTAATGTTTTTCTTTTTCAGAAGTCATCCTGATCATGAAAACTAGCTCCATCCACTGACAGCAAATTGGGAAAAACAAAGGTTTGTGTGCTATTTGTTGTTCCATTAGTTCTCCATCGTTCCCAATTATTATTCTGAGAACGTGCTGGGCTAGAAAGAGCAAAAATTGTCGGACATGATGAGAAGGGCCTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>122 118 108 86 80 66 55 55 49 46 37 33 27 26 18 17 16 11 10 7 6 3 2 2</canonical_bands>
                <polymorphic_bands>122 118 114 86 80 66 55 55 49 46 37 33 27 26 18 17 16 11 10 7 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGTCTTGCCGTTTGTTTTAAT</pcr_primer_p1>
		<pcr_primer_p2>AAACAACAAGATGTGTATGAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAGTCTTGCCGTTTGTTTTAATTGTTTCGGACATAAAGCAGCTTGATCGCGCCACACATTTTTATTCAAAACCAACCAAGTGGCTGTGTTGTTTTATCGCGGTTTATGATTTCAATATAATGAATGAACATTAGTCATTAGGATTTTGCTGGATATGCAAAACATTGTTCTTCATTATTTTCCATCAAAAAAACCACCACCCAGCTAAATGTAACATGTAGAAAATTCTTCATACACATCTTGTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>TAGTCTTGCCGTTTGTTTTAATTGTTTCGGACATAAAGCAGCTTGATCGCGCCACACATTTTTATTCAAAACCAACCAAGTGGCTGWGTTGTTTTATCGCGGTTTATGATTTCAATATAATGAATGAACATTAGTCATTAGGATTTTGCTGGATATGCAAAACATTGTTCTTCATTATTTTCCATCAAAAAAACCACCACCCAGCTAAATGTAACATGTAGAAAATTCTTCATACACATCTTGTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7371</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>125354</contig_pos>
        <strand>+</strand>
        <context>AAATTTTGAT[G/T]GRGATAACCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCTTGAAAAGATAAAAAGTATAATGTCTAAGTTTTTCGAGAAATTTTGAT</left_flank>
        <right_flank>GAGATAACCGGTTCTTATCAATCGAAAATAAATAGATTTTTGTCTAATGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTGCAAATTGAAATTGCAACACTATCCAAGAGATGAACAAACAGTGTTATCAGAAACAATGCTTGTTATCATTCTATTGTTATCGATAAAATAATGGAAAATCACTCGTTTTCTTGGAACTTTTCTAGACGTGGCTAAGAGACAGAATGACAAGAAAGAGGGGGGAAATCAATGCACTTGCATGTTGGCATCCATCACAAATGCAGAGTGAGAGGAATCAGTTGAGAGACTTGCCCTAGAATTCCGTAAATGATGGAACTGATCCTTGTCGGTGTAAACCATGGATAACAAGAATTGAACAATGTTGTTGATAATAGTGCTTGTGGCGTAGACACCTCCAAGGATCGAACAAATGCGGATGAGATAGGAGAAGAGGGTTCTGAAATAGGATGTTAGAGGGTTGCGACTTGAGGTTTAGTCACATTTTGGTCTATGTCTTTGAGATCACCTTGAAAAGATAAAAAGTATAATGTCTAAGTTTTTCGAGAAATTTTGATGGAGATAACCGGTTCTTATCAATCGAAAATAAATAGATTTTTGTCTAATGGTTTTTGATGTGATCTTAAATCAAAGATCGCGAAAATCAGCTGAATTAATAGGGAGTTTATAATTTCGGCTTTGAAACATTAGACGTGTGAAACAATTTCTTGTAAATTGAAACATTCCAAAAAAAAAAATTCCAAAATTATGAAATTTTGGAAACTTGGAAATTCAGAAAATTCCGATTTTTTCTTTTTGCAATTTCGGACACCATGAGATTTTTTATTCAATTTCAGAATACCGTATCCGAAGGACATTCCATTGCTTCAATGTACTTCCAGAAGGCCCTTCTATCACAGGATTCTTTCAATTAGAGATGTCCTTCTATTTTTCCCGCCATTTTTTTTACGAAAACTGCTATCGAAAAATTCTAGTTCAAGCTTTGACGAAATCCTATAAACTGTATTTGAGCATTTAACTGTAATTGAGCAAATTTCTCGAGCAAAAGAATGTTTCAA</canonical>
            <polymorphic>GATTGCAAATTGAAATTGCAACACTATCCAAGAGATGAACAAACAGTGTTATCAGAAACAATGCTTGTTATCATTCTATTGTTATCGATAAAATAATGGAAAATCACTCGTTTTCTTGGAACTTTTCTAGACGTGGCTAAGAGACAGAATGACAAGAAAGAGGGGGGAAATCAATGCACTTGCATGTTGGCATCCATCACAAATGCAGAGTGAGAGGAATCAGTTGAGAGACTTGCCCTAGAATTCCGTAAATGATGGAACTGATCCTTGTCGGTGTAAACCATGGATAACAAGAATTGAACAATGTTGTTGATAATAGTGCTTGTGGCGTAGACACCTCCAAGGATCGAACAAATGCGGATGAGATAGGAGAAGAGGGTTCTGAAATAGGATGTTAGAGGGTTGCGACTTGAGGTTTAGTCACATTTTGGTCTATGTCTTTGAGATCACCTTGAAAAGATAAAAAGTATAATGTCTAAGTTTTTCGAGAAATTTTGATKGAGATAACCGGTTCTTATCAATCGAAAATAAATAGATTTTTGTCTAATGGTTTTTGATGTGATCTTAAATCAAAGATCGCGAAAATCAGCTGAATTAATAGGGAGTTTATAATTTCGGCTTTGAAACATTAGACGTGTGAAACAATTTCTTGTAAATTGAAACATTCCAAAAAAAAAAATTCCAAAATTATGAAATTTTGGAAACTTGGAAATTCAGAAAATTCCGATTTTTTCTTTTTGCAATTTCGGACACCATGAGATTTTTTATTCAATTTCAGAATACCGTATCCGAAGGACATTCCATTGCTTCAATGTACTTCCAGAAGGCCCTTCTATCACAGGATTCTTTCAATTAGAGATGTCCTTCTATTTTTCCCGCCATTTTTTTTACGAAAACTGCTATCGAAAAATTCTAGTTCAAGCTTTGACGAAATCCTATAAACTGTATTTGAGCATTTAACTGTAATTGAGCAAATTTCTCGAGCAAAAGAATGTTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGGTTCTGAAATAGGATGTTAG</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAAGCCGAAATTATAAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGGGTTCTGAAATAGGATGTTAGAGGGTTGCGACTTGAGGTTTAGTCACATTTTGGTCTATGTCTTTGAGATCACCTTGAAAAGATAAAAAGTATAATGTCTAAGTTTTTCGAGAAATTTTGATGGAGATAACCGGTTCTTATCAATCGAAAATAAATAGATTTTTGTCTAATGGTTTTTGATGTGATCTTAAATCAAAGATCGCGAAAATCAGCTGAATTAATAGGGAGTTTATAATTTCGGCTTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>AGGGTTCTGAAATAGGATGTTAGAGGGTTGCGACTTGAGGTTTAGTCACATTTTGGTCTATGTCTTTGAGATCACCTTGAAAAGATAAAAAGTATAATGTCTAAGTTTTTCGAGAAATTTTGATKGAGATAACCGGTTCTTATCAATCGAAAATAAATAGATTTTTGTCTAATGGTTTTTGATGTGATCTTAAATCAAAGATCGCGAAAATCAGCTGAATTAATAGGGAGTTTATAATTTCGGCTTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7372</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>125356</contig_pos>
        <strand>+</strand>
        <context>ATTTTGATKG[A/G]GATAACCGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAAAAGATAAAAAGTATAATGTCTAAGTTTTTCGAGAAATTTTGATGG</left_flank>
        <right_flank>GATAACCGGTTCTTATCAATCGAAAATAAATAGATTTTTGTCTAATGGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCAAATTGAAATTGCAACACTATCCAAGAGATGAACAAACAGTGTTATCAGAAACAATGCTTGTTATCATTCTATTGTTATCGATAAAATAATGGAAAATCACTCGTTTTCTTGGAACTTTTCTAGACGTGGCTAAGAGACAGAATGACAAGAAAGAGGGGGGAAATCAATGCACTTGCATGTTGGCATCCATCACAAATGCAGAGTGAGAGGAATCAGTTGAGAGACTTGCCCTAGAATTCCGTAAATGATGGAACTGATCCTTGTCGGTGTAAACCATGGATAACAAGAATTGAACAATGTTGTTGATAATAGTGCTTGTGGCGTAGACACCTCCAAGGATCGAACAAATGCGGATGAGATAGGAGAAGAGGGTTCTGAAATAGGATGTTAGAGGGTTGCGACTTGAGGTTTAGTCACATTTTGGTCTATGTCTTTGAGATCACCTTGAAAAGATAAAAAGTATAATGTCTAAGTTTTTCGAGAAATTTTGATGGAGATAACCGGTTCTTATCAATCGAAAATAAATAGATTTTTGTCTAATGGTTTTTGATGTGATCTTAAATCAAAGATCGCGAAAATCAGCTGAATTAATAGGGAGTTTATAATTTCGGCTTTGAAACATTAGACGTGTGAAACAATTTCTTGTAAATTGAAACATTCCAAAAAAAAAAATTCCAAAATTATGAAATTTTGGAAACTTGGAAATTCAGAAAATTCCGATTTTTTCTTTTTGCAATTTCGGACACCATGAGATTTTTTATTCAATTTCAGAATACCGTATCCGAAGGACATTCCATTGCTTCAATGTACTTCCAGAAGGCCCTTCTATCACAGGATTCTTTCAATTAGAGATGTCCTTCTATTTTTCCCGCCATTTTTTTTACGAAAACTGCTATCGAAAAATTCTAGTTCAAGCTTTGACGAAATCCTATAAACTGTATTTGAGCATTTAACTGTAATTGAGCAAATTTCTCGAGCAAAAGAATGTTTCAAAG</canonical>
            <polymorphic>TTGCAAATTGAAATTGCAACACTATCCAAGAGATGAACAAACAGTGTTATCAGAAACAATGCTTGTTATCATTCTATTGTTATCGATAAAATAATGGAAAATCACTCGTTTTCTTGGAACTTTTCTAGACGTGGCTAAGAGACAGAATGACAAGAAAGAGGGGGGAAATCAATGCACTTGCATGTTGGCATCCATCACAAATGCAGAGTGAGAGGAATCAGTTGAGAGACTTGCCCTAGAATTCCGTAAATGATGGAACTGATCCTTGTCGGTGTAAACCATGGATAACAAGAATTGAACAATGTTGTTGATAATAGTGCTTGTGGCGTAGACACCTCCAAGGATCGAACAAATGCGGATGAGATAGGAGAAGAGGGTTCTGAAATAGGATGTTAGAGGGTTGCGACTTGAGGTTTAGTCACATTTTGGTCTATGTCTTTGAGATCACCTTGAAAAGATAAAAAGTATAATGTCTAAGTTTTTCGAGAAATTTTGATGGRGATAACCGGTTCTTATCAATCGAAAATAAATAGATTTTTGTCTAATGGTTTTTGATGTGATCTTAAATCAAAGATCGCGAAAATCAGCTGAATTAATAGGGAGTTTATAATTTCGGCTTTGAAACATTAGACGTGTGAAACAATTTCTTGTAAATTGAAACATTCCAAAAAAAAAAATTCCAAAATTATGAAATTTTGGAAACTTGGAAATTCAGAAAATTCCGATTTTTTCTTTTTGCAATTTCGGACACCATGAGATTTTTTATTCAATTTCAGAATACCGTATCCGAAGGACATTCCATTGCTTCAATGTACTTCCAGAAGGCCCTTCTATCACAGGATTCTTTCAATTAGAGATGTCCTTCTATTTTTCCCGCCATTTTTTTTACGAAAACTGCTATCGAAAAATTCTAGTTCAAGCTTTGACGAAATCCTATAAACTGTATTTGAGCATTTAACTGTAATTGAGCAAATTTCTCGAGCAAAAGAATGTTTCAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGGTTCTGAAATAGGATGTTAG</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAAGCCGAAATTATAAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGGGTTCTGAAATAGGATGTTAGAGGGTTGCGACTTGAGGTTTAGTCACATTTTGGTCTATGTCTTTGAGATCACCTTGAAAAGATAAAAAGTATAATGTCTAAGTTTTTCGAGAAATTTTGATGGAGATAACCGGTTCTTATCAATCGAAAATAAATAGATTTTTGTCTAATGGTTTTTGATGTGATCTTAAATCAAAGATCGCGAAAATCAGCTGAATTAATAGGGAGTTTATAATTTCGGCTTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>AGGGTTCTGAAATAGGATGTTAGAGGGTTGCGACTTGAGGTTTAGTCACATTTTGGTCTATGTCTTTGAGATCACCTTGAAAAGATAAAAAGTATAATGTCTAAGTTTTTCGAGAAATTTTGATGGRGATAACCGGTTCTTATCAATCGAAAATAAATAGATTTTTGTCTAATGGTTTTTGATGTGATCTTAAATCAAAGATCGCGAAAATCAGCTGAATTAATAGGGAGTTTATAATTTCGGCTTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7373</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>127166</contig_pos>
        <strand>+</strand>
        <context>TTATGTTGCA[G/T]GGCGTGTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTCACCGGAATACTCGTCGGAAGAACTGGCTACTTGCATTATGTTGCA</left_flank>
        <right_flank>GGCGTGTTGATAACCATATCCAGATCGAGGAGAGGCATTCTGAAGAAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAGACGACACGCTTTTCCATCGTCTCCATCCCCACCACCATTGTCAGCCACCAGTTGGAACATTCCCATTCCATTACTAACCAAGAACATCTGAAATAACTTTTGATAACTTTCCACATGTCTGATTAACTCACAATCTGTCCGTTCCCCCGGTGTTGCTGCTTCTTATTTTTCATTCTTTGTTCCTTTATATGAGCGGCCTCCTCTTCTTGCTTTTCATTTGCCAAATGCTCCAGATTGGTTTCAATATCGTCATCGACATATTCCAACTGTCAAAAACATTCTTCAAACAGCAAAAAATTGAATAAAAATACCTCTTCCAGCGCGCGAAGTCCTCTTTTGTTGTATTGGTCATGTGCATGACGTAGAATAGTCCAATACATTTGCTCTTCGTCAGTGAAATCAAATCTAGTTGGATTCTTCTGGATGGTTTGCCGGAGAAGACCATTTTCACCGGAATACTCGTCGGAAGAACTGGCTACTTGCATTATGTTGCAGGGCGTGTTGATAACCATATCCAGATCGAGGAGAGGCATTCTGAAGAAAATCAATTTACGGGAAAAACGGGGGAAGGTCGTCACTCACTCATCCATCTCTGTGTCCACCGCAAACCGATAATCATACTTTTTGTGGAACAAAAATGTGTATGTTTCCGTGCAAAACAGACAGAAAATGATGGTGAAGCACACAAATGAAACTGAAAAAATCACATTGTTCGTGTTGCTTTCAATATCTTTTATATTGCAATTTTTTTAATTGAAAAAAACTCACTTGCACCAGAGGACGCTTTTTTCTCCTCTTTCACATTTTCCACTACTTTTTCGAATATATCGAAATCCTCGACAATTTTTGTTATCCCTTTTCGCTGTCGTATTTCCGATGTTCCGAGATCCATTGTTGAATAAATAGAAAATAAATAAAAAGTAAAGGAGTAAAACGCGTGGTTTACTGGGGAAATACTGGCAAGTCCGCAAACACCACCACGATAAGTTGCGGCC</canonical>
            <polymorphic>TGAAGACGACACGCTTTTCCATCGTCTCCATCCCCACCACCATTGTCAGCCACCAGTTGGAACATTCCCATTCCATTACTAACCAAGAACATCTGAAATAACTTTTGATAACTTTCCACATGTCTGATTAACTCACAATCTGTCCGTTCCCCCGGTGTTGCTGCTTCTTATTTTTCATTCTTTGTTCCTTTATATGAGCGGCCTCCTCTTCTTGCTTTTCATTTGCCAAATGCTCCAGATTGGTTTCAATATCGTCATCGACATATTCCAACTGTCAAAAACATTCTTCAAACAGCAAAAAATTGAATAAAAATACCTCTTCCAGCGCGCGAAGTCCTCTTTTGTTGTATTGGTCATGTGCATGACGTAGAATAGTCCAATACATTTGCTCTTCGTCAGTGAAATCAAATCTAGTTGGATTCTTCTGGATGGTTTGCCGGAGAAGACCATTTTCACCGGAATACTCGTCGGAAGAACTGGCTACTTGCATTATGTTGCAKGGCGTGTTGATAACCATATCCAGATCGAGGAGAGGCATTCTGAAGAAAATCAATTTACGGGAAAAACGGGGGAAGGTCGTCACTCACTCATCCATCTCTGTGTCCACCGCAAACCGATAATCATACTTTTTGTGGAACAAAAATGTGTATGTTTCCGTGCAAAACAGACAGAAAATGATGGTGAAGCACACAAATGAAACTGAAAAAATCACATTGTTCGTGTTGCTTTCAATATCTTTTATATTGCAATTTTTTTAATTGAAAAAAACTCACTTGCACCAGAGGACGCTTTTTTCTCCTCTTTCACATTTTCCACTACTTTTTCGAATATATCGAAATCCTCGACAATTTTTGTTATCCCTTTTCGCTGTCGTATTTCCGATGTTCCGAGATCCATTGTTGAATAAATAGAAAATAAATAAAAAGTAAAGGAGTAAAACGCGTGGTTTACTGGGGAAATACTGGCAAGTCCGCAAACACCACCACGATAAGTTGCGGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAATCTAGTTGGATTCTTCTG</pcr_primer_p1>
		<pcr_primer_p2>AAACATACACATTTTTGTTCCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAAATCTAGTTGGATTCTTCTGGATGGTTTGCCGGAGAAGACCATTTTCACCGGAATACTCGTCGGAAGAACTGGCTACTTGCATTATGTTGCAGGGCGTGTTGATAACCATATCCAGATCGAGGAGAGGCATTCTGAAGAAAATCAATTTACGGGAAAAACGGGGGAAGGTCGTCACTCACTCATCCATCTCTGTGTCCACCGCAAACCGATAATCATACTTTTTGTGGAACAAAAATGTGTATGTTT</canonical_amplicon>
		<polymorphic_amplicon>TCAAATCTAGTTGGATTCTTCTGGATGGTTTGCCGGAGAAGACCATTTTCACCGGAATACTCGTCGGAAGAACTGGCTACTTGCATTATGTTGCAKGGCGTGTTGATAACCATATCCAGATCGAGGAGAGGCATTCTGAAGAAAATCAATTTACGGGAAAAACGGGGGAAGGTCGTCACTCACTCATCCATCTCTGTGTCCACCGCAAACCGATAATCATACTTTTTGTGGAACAAAAATGTGTATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7374</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>127036</contig_pos>
        <strand>+</strand>
        <context>GCATGACGTA[A/G]AATAGTCCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCAGCGCGCGAAGTCCTCTTTTGTTGTATTGGTCATGTGCATGACGTA</left_flank>
        <right_flank>AATAGTCCAATACATTTGCTCTTCGTCAGTGAAATCAAATCTAGTTGGAT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTGAATTTTTCAATTCTATGAGAAATATTCCCCTGTTGAGGACCTCCATGGTCGAACATTATGAGCGGGTTGCTGATGGACATTATAATCTTCTCTTCTTTTCCTTTTCTAACTCGGAACTTTCCATGAAGACGACACGCTTTTCCATCGTCTCCATCCCCACCACCATTGTCAGCCACCAGTTGGAACATTCCCATTCCATTACTAACCAAGAACATCTGAAATAACTTTTGATAACTTTCCACATGTCTGATTAACTCACAATCTGTCCGTTCCCCCGGTGTTGCTGCTTCTTATTTTTCATTCTTTGTTCCTTTATATGAGCGGCCTCCTCTTCTTGCTTTTCATTTGCCAAATGCTCCAGATTGGTTTCAATATCGTCATCGACATATTCCAACTGTCAAAAACATTCTTCAAACAGCAAAAAATTGAATAAAAATACCTCTTCCAGCGCGCGAAGTCCTCTTTTGTTGTATTGGTCATGTGCATGACGTAGAATAGTCCAATACATTTGCTCTTCGTCAGTGAAATCAAATCTAGTTGGATTCTTCTGGATGGTTTGCCGGAGAAGACCATTTTCACCGGAATACTCGTCGGAAGAACTGGCTACTTGCATTATGTTGCAGGGCGTGTTGATAACCATATCCAGATCGAGGAGAGGCATTCTGAAGAAAATCAATTTACGGGAAAAACGGGGGAAGGTCGTCACTCACTCATCCATCTCTGTGTCCACCGCAAACCGATAATCATACTTTTTGTGGAACAAAAATGTGTATGTTTCCGTGCAAAACAGACAGAAAATGATGGTGAAGCACACAAATGAAACTGAAAAAATCACATTGTTCGTGTTGCTTTCAATATCTTTTATATTGCAATTTTTTTAATTGAAAAAAACTCACTTGCACCAGAGGACGCTTTTTTCTCCTCTTTCACATTTTCCACTACTTTTTCGAATATATCGAAATCCTCGACAATTTTTGTTATCCCTTTTCGCTG</canonical>
            <polymorphic>AAAATTGAATTTTTCAATTCTATGAGAAATATTCCCCTGTTGAGGACCTCCATGGTCGAACATTATGAGCGGGTTGCTGATGGACATTATAATCTTCTCTTCTTTTCCTTTTCTAACTCGGAACTTTCCATGAAGACGACACGCTTTTCCATCGTCTCCATCCCCACCACCATTGTCAGCCACCAGTTGGAACATTCCCATTCCATTACTAACCAAGAACATCTGAAATAACTTTTGATAACTTTCCACATGTCTGATTAACTCACAATCTGTCCGTTCCCCCGGTGTTGCTGCTTCTTATTTTTCATTCTTTGTTCCTTTATATGAGCGGCCTCCTCTTCTTGCTTTTCATTTGCCAAATGCTCCAGATTGGTTTCAATATCGTCATCGACATATTCCAACTGTCAAAAACATTCTTCAAACAGCAAAAAATTGAATAAAAATACCTCTTCCAGCGCGCGAAGTCCTCTTTTGTTGTATTGGTCATGTGCATGACGTARAATAGTCCAATACATTTGCTCTTCGTCAGTGAAATCAAATCTAGTTGGATTCTTCTGGATGGTTTGCCGGAGAAGACCATTTTCACCGGAATACTCGTCGGAAGAACTGGCTACTTGCATTATGTTGCAGGGCGTGTTGATAACCATATCCAGATCGAGGAGAGGCATTCTGAAGAAAATCAATTTACGGGAAAAACGGGGGAAGGTCGTCACTCACTCATCCATCTCTGTGTCCACCGCAAACCGATAATCATACTTTTTGTGGAACAAAAATGTGTATGTTTCCGTGCAAAACAGACAGAAAATGATGGTGAAGCACACAAATGAAACTGAAAAAATCACATTGTTCGTGTTGCTTTCAATATCTTTTATATTGCAATTTTTTTAATTGAAAAAAACTCACTTGCACCAGAGGACGCTTTTTTCTCCTCTTTCACATTTTCCACTACTTTTTCGAATATATCGAAATCCTCGACAATTTTTGTTATCCCTTTTCGCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAACATTCTTCAAACAGC</pcr_primer_p1>
		<pcr_primer_p2>GATCTGGATATGGTTATCAACAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAAAAACATTCTTCAAACAGCAAAAAATTGAATAAAAATACCTCTTCCAGCGCGCGAAGTCCTCTTTTGTTGTATTGGTCATGTGCATGACGTAGAATAGTCCAATACATTTGCTCTTCGTCAGTGAAATCAAATCTAGTTGGATTCTTCTGGATGGTTTGCCGGAGAAGACCATTTTCACCGGAATACTCGTCGGAAGAACTGGCTACTTGCATTATGTTGCAGGGCGTGTTGATAACCATATCCAGATC</canonical_amplicon>
		<polymorphic_amplicon>CAAAAACATTCTTCAAACAGCAAAAAATTGAATAAAAATACCTCTTCCAGCGCGCGAAGTCCTCTTTTGTTGTATTGGTCATGTGCATGACGTARAATAGTCCAATACATTTGCTCTTCGTCAGTGAAATCAAATCTAGTTGGATTCTTCTGGATGGTTTGCCGGAGAAGACCATTTTCACCGGAATACTCGTCGGAAGAACTGGCTACTTGCATTATGTTGCAGGGCGTGTTGATAACCATATCCAGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7375</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>134947</contig_pos>
        <strand>+</strand>
        <context>TCGCTTTTTG[A/G]ACATTCTAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCCCATATTTTTCCCGTTTTTTTTTTTGAAAATTTTTCCTCGCTTTTTG</left_flank>
        <right_flank>ACATTCTAGAGTGGAATTTGATTTGGACCACGCAAACCAACCGAACTGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGTGCGTGCATGAAAAAAGAAAGGAGGACCTTGTTTCTTTTTTCTCTTTTCTTGACCAAAATTACTCTATTGCTGTGCAGTTGAGCATTTTCTAGGATAAGAAGGGTTTGGGAAAGATGGAGCAAGTAGAATAAGAAGAAGAACAAGTAGAAGAAGAAACAGAAGAAGAAGAAACCGCCTGACGGAAGAAAAGGGAAGAAGAAGAAGCCGTCGACGAAGTAGAAGAAGCAGTAGAAGGACAACAACTACACGTCCGTTGTCGCAAAAATATTCAGTGAAAAAGACATGATAGAGTGAAGAAGGGAAAGAAGAAGCTTTCACATATATTCGGAGAACCACACATACACATACACACCCGCTTGTAAAAAAATTAGTTCCCCAATAGGTTGTTTCGATACTTTTTTTTCTTCTGGAGCGTTTTCAAAAAAAAAAGACAAATACTTTTTGTCCCATATTTTTCCCGTTTTTTTTTTTGAAAATTTTTCCTCGCTTTTTGAACATTCTAGAGTGGAATTTGATTTGGACCACGCAAACCAACCGAACTGACCGTTGAACTATCAGTAAGAAACGATGGCGTCACATAGGCTGAGATTCTTGGCCTAAAAGCTTGACGGTGTTGATTTTTGCAAGATCAGAGTTTTGTTTTTCCTAGCAATCAGCATTATCGGTTCTACTGCCGCTGCAGAACCGAATTTGTTTTCTCTTTAATTTCATCAACGCATACATCATTATTTCTAGACTACCGCCACTTCTTTTTTGGCTCTTTGAGCATCGCTCGAGTCATTTGAATAAAGTTGATGGAATAGGAAAACACGATTAGCATCCGAACGCCTCCTATCATCACCGTTCAATTTCTGTGCAGTGGATATTGATACTTCCTGTGCCAAAATTCGAATATTGGCGTGCATGGAACAGAAAAGTTGAATATGCAAATTTTCAATAAGGCTTCTTGTTCTTCTTCTTTTTTTTCTCTAGTCTGGTTTTCTAATTTTTGGGG</canonical>
            <polymorphic>AATTGTGCGTGCATGAAAAAAGAAAGGAGGACCTTGTTTCTTTTTTCTCTTTTCTTGACCAAAATTACTCTATTGCTGTGCAGTTGAGCATTTTCTAGGATAAGAAGGGTTTGGGAAAGATGGAGCAAGTAGAATAAGAAGAAGAACAAGTAGAAGAAGAAACAGAAGAAGAAGAAACCGCCTGACGGAAGAAAAGGGAAGAAGAAGAAGCCGTCGACGAAGTAGAAGAAGCAGTAGAAGGACAACAACTACACGTCCGTTGTCGCAAAAATATTCAGTGAAAAAGACATGATAGAGTGAAGAAGGGAAAGAAGAAGCTTTCACATATATTCGGAGAACCACACATACACATACACACCCGCTTGTAAAAAAATTAGTTCCCCAATAGGTTGTTTCGATACTTTTTTTTCTTCTGGAGCGTTTTCAAAAAAAAAAGACAAATACTTTTTGTCCCATATTTTTCCCGTTTTTTTTTTTGAAAATTTTTCCTCGCTTTTTGRACATTCTAGAGTGGAATTTGATTTGGACCACGCAAACCAACCGAACTGACCGTTGAACTATCAGTAAGAAACGATGGCGTCACATAGGCTGAGATTCTTGGCCTAAAAGCTTGACGGTGTTGATTTTTGCAAGATCAGAGTTTTGTTTTTCCTAGCAATCAGCATTATCGGTTCTACTGCCGCTGCAGAACCGAATTTGTTTTCTCTTTAATTTCATCAACGCATACATCATTATTTCTAGACTACCGCCACTTCTTTTTTGGCTCTTTGAGCATCGCTCGAGTCATTTGAATAAAGTTGATGGAATAGGAAAACACGATTAGCATCCGAACGCCTCCTATCATCACCGTTCAATTTCTGTGCAGTGGATATTGATACTTCCTGTGCCAAAATTCGAATATTGGCGTGCATGGAACAGAAAAGTTGAATATGCAAATTTTCAATAAGGCTTCTTGTTCTTCTTCTTTTTTTTCTCTAGTCTGGTTTTCTAATTTTTGGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATATTCGGAGAACCACACATAC</pcr_primer_p1>
		<pcr_primer_p2>CCATCGTTTCTTACTGATAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATATTCGGAGAACCACACATACACATACACACCCGCTTGTAAAAAAATTAGTTCCCCAATAGGTTGTTTCGATACTTTTTTTTCTTCTGGAGCGTTTTCAAAAAAAAAAGACAAATACTTTTTGTCCCATATTTTTCCCGTTTTTTTTTTTGAAAATTTTTCCTCGCTTTTTGAACATTCTAGAGTGGAATTTGATTTGGACCACGCAAACCAACCGAACTGACCGTTGAACTATCAGTAAGAAACGATGG</canonical_amplicon>
		<polymorphic_amplicon>TATATTCGGAGAACCACACATACACATACACACCCGCTTGTAAAAAAATTAGTTCCCCAATAGGTTGTTTCGATACTTTTTTTTCTTCTGGAGCGTTTTCAAAAAAAAAAGACAAATACTTTTTGTCCCATATTTTTCCCGTTTTTTTTTTTGAAAATTTTTCCTCGCTTTTTGRACATTCTAGAGTGGAATTTGATTTGGACCACGCAAACCAACCGAACTGACCGTTGAACTATCAGTAAGAAACGATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7376</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>183096</contig_pos>
        <strand>+</strand>
        <context>TACCATATTT[A/T]GTTTKATTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTCTCTTGTGTGTTCTGGAATAAAAATTGGTAATTGAACTACCATATTT</left_flank>
        <right_flank>GTTTTATTGGAATGTCACGTGGAAGAATTAAACAAACAACACTTCAGTAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATATCTTTAGACTAGACCTCTGATTAGAAACTTTCAAAAGCGTTGCTTACCTGACGGTCTGTTCATTGCTCTTGTTTTTCAAAAATTGTATCTAGCAAAGAAAGAATAAGTTCAGTTTGCAGAAACTGTGTTTCTAGTGATAGCCGGTCTCGTAATTTGTTAAGAGAGGCGGGGAATACGAGACAAGGATCTCCCAACACAGAACAAATCGAACAAATGTCAACAGGCGACTCAGTACTGCGTATCTCGGTTTGTAATGTCTCGGGATGTTTCTTTTCGGAGCTACCGTAGTACTTGTGGGAAAAGTAACTAAAATGTCAAAAAGTCGGCAAATGAGTGTCAAAGTCAAAGATGTGAGAGCGGCACACAAACAAATATAAGAGGGGGTACGAAGAAAAAACGTTTGTCCTATATTGAGGAATAGGTATTCAAGTGACACTGCGTTCTGACTCTCTTGTGTGTTCTGGAATAAAAATTGGTAATTGAACTACCATATTTAGTTTTATTGGAATGTCACGTGGAAGAATTAAACAAACAACACTTCAGTAACAACTATGAGAAGGAAATTTGGACAAAAAAGTTTTTATCATCATTATTCATCAATGAGAAGAGGTTCTGTCGAGATTCGCCAATTCAGAAGATTTCGGTTTCCCATTTGTGAATCAAAGTGTTGAATTTCCACTCATCTGGGTGTCCTACATGGCTGACTTTGTCCTTCTGAAAATGCACTTGGTGAAAAGCATCAAATGTTTGCACAGTTTCAAAACAAAACTTTTAAAAAGTCAGTGATAAATCTTTAGGCATCATAACTCACAAAGTCAAACTCAGACCACTTGAACGATGGAACTTTTCCCCATGTTGGTCCTCCTTGAGCAACGAATTGAAGTTTCTTCATCAACTCAACATTGGTTCCCTGGAAACAAGAACACGATAGGTTATGTTTTCTGTATTCTGAATTTTGATATGTACCTTATAATCCAAAGCTCCATGGTTAACGTG</canonical>
            <polymorphic>GATATCTTTAGACTAGACCTCTGATTAGAAACTTTCAAAAGCGTTGCTTACCTGACGGTCTGTTCATTGCTCTTGTTTTTCAAAAATTGTATCTAGCAAAGAAAGAATAAGTTCAGTTTGCAGAAACTGTGTTTCTAGTGATAGCCGGTCTCGTAATTTGTTAAGAGAGGCGGGGAATACGAGACAAGGATCTCCCAACACAGAACAAATCGAACAAATGTCAACAGGCGACTCAGTACTGCGTATCTCGGTTTGTAATGTCTCGGGATGTTTCTTTTCGGAGCTACCGTAGTACTTGTGGGAAAAGTAACTAAAATGTCAAAAAGTCGGCAAATGAGTGTCAAAGTCAAAGATGTGAGAGCGGCACACAAACAAATATAAGAGGGGGTACGAAGAAAAAACGTTTGTCCTATATTGAGGAATAGGTATTCAAGTGACACTGCGTTCTGACTCTCTTGTGTGTTCTGGAATAAAAATTGGTAATTGAACTACCATATTTWGTTTTATTGGAATGTCACGTGGAAGAATTAAACAAACAACACTTCAGTAACAACTATGAGAAGGAAATTTGGACAAAAAAGTTTTTATCATCATTATTCATCAATGAGAAGAGGTTCTGTCGAGATTCGCCAATTCAGAAGATTTCGGTTTCCCATTTGTGAATCAAAGTGTTGAATTTCCACTCATCTGGGTGTCCTACATGGCTGACTTTGTCCTTCTGAAAATGCACTTGGTGAAAAGCATCAAATGTTTGCACAGTTTCAAAACAAAACTTTTAAAAAGTCAGTGATAAATCTTTAGGCATCATAACTCACAAAGTCAAACTCAGACCACTTGAACGATGGAACTTTTCCCCATGTTGGTCCTCCTTGAGCAACGAATTGAAGTTTCTTCATCAACTCAACATTGGTTCCCTGGAAACAAGAACACGATAGGTTATGTTTTCTGTATTCTGAATTTTGATATGTACCTTATAATCCAAAGCTCCATGGTTAACGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAGTGTCAAAGTCAAAGATGT</pcr_primer_p1>
		<pcr_primer_p2>GTCCAAATTTCCTTCTCATAGTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATGAGTGTCAAAGTCAAAGATGTGAGAGCGGCACACAAACAAATATAAGAGGGGGTACGAAGAAAAAACGTTTGTCCTATATTGAGGAATAGGTATTCAAGTGACACTGCGTTCTGACTCTCTTGTGTGTTCTGGAATAAAAATTGGTAATTGAACTACCATATTTAGTTTTATTGGAATGTCACGTGGAAGAATTAAACAAACAACACTTCAGTAACAACTATGAGAAGGAAATTTGGAC</canonical_amplicon>
		<polymorphic_amplicon>ATGAGTGTCAAAGTCAAAGATGTGAGAGCGGCACACAAACAAATATAAGAGGGGGTACGAAGAAAAAACGTTTGTCCTATATTGAGGAATAGGTATTCAAGTGACACTGCGTTCTGACTCTCTTGTGTGTTCTGGAATAAAAATTGGTAATTGAACTACCATATTTWGTTTTATTGGAATGTCACGTGGAAGAATTAAACAAACAACACTTCAGTAACAACTATGAGAAGGAAATTTGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7377</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>183101</contig_pos>
        <strand>+</strand>
        <context>TATTTWGTTT[G/T]ATTGGAATGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTGTGTGTTCTGGAATAAAAATTGGTAATTGAACTACCATATTTAGTTT</left_flank>
        <right_flank>ATTGGAATGTCACGTGGAAGAATTAAACAAACAACACTTCAGTAACAACT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTAGACTAGACCTCTGATTAGAAACTTTCAAAAGCGTTGCTTACCTGACGGTCTGTTCATTGCTCTTGTTTTTCAAAAATTGTATCTAGCAAAGAAAGAATAAGTTCAGTTTGCAGAAACTGTGTTTCTAGTGATAGCCGGTCTCGTAATTTGTTAAGAGAGGCGGGGAATACGAGACAAGGATCTCCCAACACAGAACAAATCGAACAAATGTCAACAGGCGACTCAGTACTGCGTATCTCGGTTTGTAATGTCTCGGGATGTTTCTTTTCGGAGCTACCGTAGTACTTGTGGGAAAAGTAACTAAAATGTCAAAAAGTCGGCAAATGAGTGTCAAAGTCAAAGATGTGAGAGCGGCACACAAACAAATATAAGAGGGGGTACGAAGAAAAAACGTTTGTCCTATATTGAGGAATAGGTATTCAAGTGACACTGCGTTCTGACTCTCTTGTGTGTTCTGGAATAAAAATTGGTAATTGAACTACCATATTTAGTTTTATTGGAATGTCACGTGGAAGAATTAAACAAACAACACTTCAGTAACAACTATGAGAAGGAAATTTGGACAAAAAAGTTTTTATCATCATTATTCATCAATGAGAAGAGGTTCTGTCGAGATTCGCCAATTCAGAAGATTTCGGTTTCCCATTTGTGAATCAAAGTGTTGAATTTCCACTCATCTGGGTGTCCTACATGGCTGACTTTGTCCTTCTGAAAATGCACTTGGTGAAAAGCATCAAATGTTTGCACAGTTTCAAAACAAAACTTTTAAAAAGTCAGTGATAAATCTTTAGGCATCATAACTCACAAAGTCAAACTCAGACCACTTGAACGATGGAACTTTTCCCCATGTTGGTCCTCCTTGAGCAACGAATTGAAGTTTCTTCATCAACTCAACATTGGTTCCCTGGAAACAAGAACACGATAGGTTATGTTTTCTGTATTCTGAATTTTGATATGTACCTTATAATCCAAAGCTCCATGGTTAACGTGTCCTT</canonical>
            <polymorphic>CTTTAGACTAGACCTCTGATTAGAAACTTTCAAAAGCGTTGCTTACCTGACGGTCTGTTCATTGCTCTTGTTTTTCAAAAATTGTATCTAGCAAAGAAAGAATAAGTTCAGTTTGCAGAAACTGTGTTTCTAGTGATAGCCGGTCTCGTAATTTGTTAAGAGAGGCGGGGAATACGAGACAAGGATCTCCCAACACAGAACAAATCGAACAAATGTCAACAGGCGACTCAGTACTGCGTATCTCGGTTTGTAATGTCTCGGGATGTTTCTTTTCGGAGCTACCGTAGTACTTGTGGGAAAAGTAACTAAAATGTCAAAAAGTCGGCAAATGAGTGTCAAAGTCAAAGATGTGAGAGCGGCACACAAACAAATATAAGAGGGGGTACGAAGAAAAAACGTTTGTCCTATATTGAGGAATAGGTATTCAAGTGACACTGCGTTCTGACTCTCTTGTGTGTTCTGGAATAAAAATTGGTAATTGAACTACCATATTTAGTTTKATTGGAATGTCACGTGGAAGAATTAAACAAACAACACTTCAGTAACAACTATGAGAAGGAAATTTGGACAAAAAAGTTTTTATCATCATTATTCATCAATGAGAAGAGGTTCTGTCGAGATTCGCCAATTCAGAAGATTTCGGTTTCCCATTTGTGAATCAAAGTGTTGAATTTCCACTCATCTGGGTGTCCTACATGGCTGACTTTGTCCTTCTGAAAATGCACTTGGTGAAAAGCATCAAATGTTTGCACAGTTTCAAAACAAAACTTTTAAAAAGTCAGTGATAAATCTTTAGGCATCATAACTCACAAAGTCAAACTCAGACCACTTGAACGATGGAACTTTTCCCCATGTTGGTCCTCCTTGAGCAACGAATTGAAGTTTCTTCATCAACTCAACATTGGTTCCCTGGAAACAAGAACACGATAGGTTATGTTTTCTGTATTCTGAATTTTGATATGTACCTTATAATCCAAAGCTCCATGGTTAACGTGTCCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAGTGTCAAAGTCAAAGATGT</pcr_primer_p1>
		<pcr_primer_p2>GTCCAAATTTCCTTCTCATAGTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATGAGTGTCAAAGTCAAAGATGTGAGAGCGGCACACAAACAAATATAAGAGGGGGTACGAAGAAAAAACGTTTGTCCTATATTGAGGAATAGGTATTCAAGTGACACTGCGTTCTGACTCTCTTGTGTGTTCTGGAATAAAAATTGGTAATTGAACTACCATATTTAGTTTTATTGGAATGTCACGTGGAAGAATTAAACAAACAACACTTCAGTAACAACTATGAGAAGGAAATTTGGAC</canonical_amplicon>
		<polymorphic_amplicon>ATGAGTGTCAAAGTCAAAGATGTGAGAGCGGCACACAAACAAATATAAGAGGGGGTACGAAGAAAAAACGTTTGTCCTATATTGAGGAATAGGTATTCAAGTGACACTGCGTTCTGACTCTCTTGTGTGTTCTGGAATAAAAATTGGTAATTGAACTACCATATTTAGTTTKATTGGAATGTCACGTGGAAGAATTAAACAAACAACACTTCAGTAACAACTATGAGAAGGAAATTTGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7378</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>183114</contig_pos>
        <strand>+</strand>
        <context>TGGAATGTCA[C/T]GTGGAAGAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAATAAAAATTGGTAATTGAACTACCATATTTAGTTTTATTGGAATGTCA</left_flank>
        <right_flank>GTGGAAGAATTAAACAAACAACACTTCAGTAACAACTATGAGAAGGAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTGATTAGAAACTTTCAAAAGCGTTGCTTACCTGACGGTCTGTTCATTGCTCTTGTTTTTCAAAAATTGTATCTAGCAAAGAAAGAATAAGTTCAGTTTGCAGAAACTGTGTTTCTAGTGATAGCCGGTCTCGTAATTTGTTAAGAGAGGCGGGGAATACGAGACAAGGATCTCCCAACACAGAACAAATCGAACAAATGTCAACAGGCGACTCAGTACTGCGTATCTCGGTTTGTAATGTCTCGGGATGTTTCTTTTCGGAGCTACCGTAGTACTTGTGGGAAAAGTAACTAAAATGTCAAAAAGTCGGCAAATGAGTGTCAAAGTCAAAGATGTGAGAGCGGCACACAAACAAATATAAGAGGGGGTACGAAGAAAAAACGTTTGTCCTATATTGAGGAATAGGTATTCAAGTGACACTGCGTTCTGACTCTCTTGTGTGTTCTGGAATAAAAATTGGTAATTGAACTACCATATTTAGTTTTATTGGAATGTCACGTGGAAGAATTAAACAAACAACACTTCAGTAACAACTATGAGAAGGAAATTTGGACAAAAAAGTTTTTATCATCATTATTCATCAATGAGAAGAGGTTCTGTCGAGATTCGCCAATTCAGAAGATTTCGGTTTCCCATTTGTGAATCAAAGTGTTGAATTTCCACTCATCTGGGTGTCCTACATGGCTGACTTTGTCCTTCTGAAAATGCACTTGGTGAAAAGCATCAAATGTTTGCACAGTTTCAAAACAAAACTTTTAAAAAGTCAGTGATAAATCTTTAGGCATCATAACTCACAAAGTCAAACTCAGACCACTTGAACGATGGAACTTTTCCCCATGTTGGTCCTCCTTGAGCAACGAATTGAAGTTTCTTCATCAACTCAACATTGGTTCCCTGGAAACAAGAACACGATAGGTTATGTTTTCTGTATTCTGAATTTTGATATGTACCTTATAATCCAAAGCTCCATGGTTAACGTGTCCTTGTCCTGGGAATTC</canonical>
            <polymorphic>CTCTGATTAGAAACTTTCAAAAGCGTTGCTTACCTGACGGTCTGTTCATTGCTCTTGTTTTTCAAAAATTGTATCTAGCAAAGAAAGAATAAGTTCAGTTTGCAGAAACTGTGTTTCTAGTGATAGCCGGTCTCGTAATTTGTTAAGAGAGGCGGGGAATACGAGACAAGGATCTCCCAACACAGAACAAATCGAACAAATGTCAACAGGCGACTCAGTACTGCGTATCTCGGTTTGTAATGTCTCGGGATGTTTCTTTTCGGAGCTACCGTAGTACTTGTGGGAAAAGTAACTAAAATGTCAAAAAGTCGGCAAATGAGTGTCAAAGTCAAAGATGTGAGAGCGGCACACAAACAAATATAAGAGGGGGTACGAAGAAAAAACGTTTGTCCTATATTGAGGAATAGGTATTCAAGTGACACTGCGTTCTGACTCTCTTGTGTGTTCTGGAATAAAAATTGGTAATTGAACTACCATATTTAGTTTTATTGGAATGTCAYGTGGAAGAATTAAACAAACAACACTTCAGTAACAACTATGAGAAGGAAATTTGGACAAAAAAGTTTTTATCATCATTATTCATCAATGAGAAGAGGTTCTGTCGAGATTCGCCAATTCAGAAGATTTCGGTTTCCCATTTGTGAATCAAAGTGTTGAATTTCCACTCATCTGGGTGTCCTACATGGCTGACTTTGTCCTTCTGAAAATGCACTTGGTGAAAAGCATCAAATGTTTGCACAGTTTCAAAACAAAACTTTTAAAAAGTCAGTGATAAATCTTTAGGCATCATAACTCACAAAGTCAAACTCAGACCACTTGAACGATGGAACTTTTCCCCATGTTGGTCCTCCTTGAGCAACGAATTGAAGTTTCTTCATCAACTCAACATTGGTTCCCTGGAAACAAGAACACGATAGGTTATGTTTTCTGTATTCTGAATTTTGATATGTACCTTATAATCCAAAGCTCCATGGTTAACGTGTCCTTGTCCTGGGAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACGTG</site>
                <isoschizomers>
                    <enzyme>AcvI</enzyme>
                    <enzyme>BbrPI</enzyme>
                    <enzyme>Eco72I</enzyme>
                    <enzyme>PmaCI</enzyme>
                    <enzyme>PmlI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>120 113 100 96 71 68 60 55 40 35 33 25 21 20 20 19 18 17 12 11 10 9 9 7 4 3 2 2</canonical_bands>
                <polymorphic_bands>120 113 100 96 71 68 60 59 40 35 33 25 21 20 20 19 18 17 12 11 10 9 9 7 3 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>479 383 116 22</canonical_bands>
                <polymorphic_bands>595 383 22</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>472 288 127 80 33</canonical_bands>
                <polymorphic_bands>472 288 127 113</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>505 415 80</canonical_bands>
                <polymorphic_bands>585 415</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAGTGTCAAAGTCAAAGATGT</pcr_primer_p1>
		<pcr_primer_p2>GTCCAAATTTCCTTCTCATAGTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATGAGTGTCAAAGTCAAAGATGTGAGAGCGGCACACAAACAAATATAAGAGGGGGTACGAAGAAAAAACGTTTGTCCTATATTGAGGAATAGGTATTCAAGTGACACTGCGTTCTGACTCTCTTGTGTGTTCTGGAATAAAAATTGGTAATTGAACTACCATATTTAGTTTTATTGGAATGTCACGTGGAAGAATTAAACAAACAACACTTCAGTAACAACTATGAGAAGGAAATTTGGAC</canonical_amplicon>
		<polymorphic_amplicon>ATGAGTGTCAAAGTCAAAGATGTGAGAGCGGCACACAAACAAATATAAGAGGGGGTACGAAGAAAAAACGTTTGTCCTATATTGAGGAATAGGTATTCAAGTGACACTGCGTTCTGACTCTCTTGTGTGTTCTGGAATAAAAATTGGTAATTGAACTACCATATTTAGTTTTATTGGAATGTCAYGTGGAAGAATTAAACAAACAACACTTCAGTAACAACTATGAGAAGGAAATTTGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7379</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>184664</contig_pos>
        <strand>+</strand>
        <context>CTCTTGGCTT[A/G]AACTCGCGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAAGTTCAGATACAAGATTGGGTGAAGCTCATAGGTGACTCTTGGCTT</left_flank>
        <right_flank>AACTCGCGTCCTTCATAAGCATCAATCATTCCGGAGAGTTGGTGGTAGGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATGGCTCTCACCCAGGTTGGAAGTTGACCGACTGGTTTGGTATTCTCGAAAAGAGAAGTGTTGAAGACACTGATAGTGGTTTCGATGACAGCCTGAAAATCAGCAAAATTATGAAAATTTGATAAGTTGATAAGAAAAATGGCAACATTTCGAAGTAAACATACCAATCCAGAAGTTTGAAGTGCAAAGTCATCAGAAGAGTACAAAAGTCCTGGGTAGGAAGAGAACGATGATCCGTATCCAGGATAGAATTGACGGTCATAACCGAACTTGTAAAGCTTGATGATTCTGAGCATGTTTTGGAATCCAGACATGGTGACTTGAGAAATAAAGAGATCCGCGTTTCCTGGAGCAACCTTGATAAGTCCGGAGCATTTTCCTCCAGTTTGGTCAAGAGCCGGGTCTCTGGTCTTGTTCAATTTCTTCTCCAAATCGTAGAAATCTCCGTTCAAGTTCAGATACAAGATTGGGTGAAGCTCATAGGTGACTCTTGGCTTGAACTCGCGTCCTTCATAAGCATCAATCATTCCGGAGAGTTGGTGGTAGGTTCTGTTGACGGCTCCCCAGTAGAGATCATCCGGAGCGACTGTCTCCAATGTAGTTTGAATCCATTTTTGGTTCTCGACAAGGAAATCGGAGAGTCTGGAGCAGTATCCAGTGAAGTTCTTACAGTAATCCTCTTGAGCGTTTTTCAAATGGTATGAAAGAACGGTTTTGGAGAGGAGTCCCTCAAGATATCCAGCAGAGTAAGCTTGGAGTTGTGGGCAGTAGTTCTCCTTGGTCTCCACTTCAAGGAAGGTCCATCTGAACAGGTTTCGTTTTTTAAAGTTTAGATTTTAGATAAAAGTCAGTCACTTTTCAGTAAACATGCTTACAAAAAATTCAACTAATTGATAACTCTGATTGCTGATTTACAAAAAAACAATTTTTCTCTTGCTCACCCAGTTGTGTTTACAGCATTTTGCCATCTGGCCACTGCAACTTGATTACGGCAGTCA</canonical>
            <polymorphic>TAATGGCTCTCACCCAGGTTGGAAGTTGACCGACTGGTTTGGTATTCTCGAAAAGAGAAGTGTTGAAGACACTGATAGTGGTTTCGATGACAGCCTGAAAATCAGCAAAATTATGAAAATTTGATAAGTTGATAAGAAAAATGGCAACATTTCGAAGTAAACATACCAATCCAGAAGTTTGAAGTGCAAAGTCATCAGAAGAGTACAAAAGTCCTGGGTAGGAAGAGAACGATGATCCGTATCCAGGATAGAATTGACGGTCATAACCGAACTTGTAAAGCTTGATGATTCTGAGCATGTTTTGGAATCCAGACATGGTGACTTGAGAAATAAAGAGATCCGCGTTTCCTGGAGCAACCTTGATAAGTCCGGAGCATTTTCCTCCAGTTTGGTCAAGAGCCGGGTCTCTGGTCTTGTTCAATTTCTTCTCCAAATCGTAGAAATCTCCGTTCAAGTTCAGATACAAGATTGGGTGAAGCTCATAGGTGACTCTTGGCTTRAACTCGCGTCCTTCATAAGCATCAATCATTCCGGAGAGTTGGTGGTAGGTTCTGTTGACGGCTCCCCAGTAGAGATCATCCGGAGCGACTGTCTCCAATGTAGTTTGAATCCATTTTTGGTTCTCGACAAGGAAATCGGAGAGTCTGGAGCAGTATCCAGTGAAGTTCTTACAGTAATCCTCTTGAGCGTTTTTCAAATGGTATGAAAGAACGGTTTTGGAGAGGAGTCCCTCAAGATATCCAGCAGAGTAAGCTTGGAGTTGTGGGCAGTAGTTCTCCTTGGTCTCCACTTCAAGGAAGGTCCATCTGAACAGGTTTCGTTTTTTAAAGTTTAGATTTTAGATAAAAGTCAGTCACTTTTCAGTAAACATGCTTACAAAAAATTCAACTAATTGATAACTCTGATTGCTGATTTACAAAAAAACAATTTTTCTCTTGCTCACCCAGTTGTGTTTACAGCATTTTGCCATCTGGCCACTGCAACTTGATTACGGCAGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTCTCCAAATCGTAGAAATC</pcr_primer_p1>
		<pcr_primer_p2>GTAAGAACTTCACTGGATACTGC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTTCTCCAAATCGTAGAAATCTCCGTTCAAGTTCAGATACAAGATTGGGTGAAGCTCATAGGTGACTCTTGGCTTGAACTCGCGTCCTTCATAAGCATCAATCATTCCGGAGAGTTGGTGGTAGGTTCTGTTGACGGCTCCCCAGTAGAGATCATCCGGAGCGACTGTCTCCAATGTAGTTTGAATCCATTTTTGGTTCTCGACAAGGAAATCGGAGAGTCTGGAGCAGTATCCAGTGAAGTTCTTAC</canonical_amplicon>
		<polymorphic_amplicon>TCTTCTCCAAATCGTAGAAATCTCCGTTCAAGTTCAGATACAAGATTGGGTGAAGCTCATAGGTGACTCTTGGCTTRAACTCGCGTCCTTCATAAGCATCAATCATTCCGGAGAGTTGGTGGTAGGTTCTGTTGACGGCTCCCCAGTAGAGATCATCCGGAGCGACTGTCTCCAATGTAGTTTGAATCCATTTTTGGTTCTCGACAAGGAAATCGGAGAGTCTGGAGCAGTATCCAGTGAAGTTCTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7380</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>184544</contig_pos>
        <strand>+</strand>
        <context>CGGAGCATTT[C/T]CCTCCAGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAAAGAGATCCGCGTTTCCTGGAGCAACCTTGATAAGTCCGGAGCATTT</left_flank>
        <right_flank>CCTCCAGTTTGGTCAAGAGCCGGGTCTCTGGTCTTGTTCAATTTCTTCTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTGTTTGGTGTGAACTTCTTGTAATCCAAAACAGCCCATTGGTTGTTGTAAGTTCCCGAGTTGTACATAGCATACAGTTTGCACCATTCTCTAGCGTCACGAGCAAGTTGGTTGGAGATAATGGCTCTCACCCAGGTTGGAAGTTGACCGACTGGTTTGGTATTCTCGAAAAGAGAAGTGTTGAAGACACTGATAGTGGTTTCGATGACAGCCTGAAAATCAGCAAAATTATGAAAATTTGATAAGTTGATAAGAAAAATGGCAACATTTCGAAGTAAACATACCAATCCAGAAGTTTGAAGTGCAAAGTCATCAGAAGAGTACAAAAGTCCTGGGTAGGAAGAGAACGATGATCCGTATCCAGGATAGAATTGACGGTCATAACCGAACTTGTAAAGCTTGATGATTCTGAGCATGTTTTGGAATCCAGACATGGTGACTTGAGAAATAAAGAGATCCGCGTTTCCTGGAGCAACCTTGATAAGTCCGGAGCATTTTCCTCCAGTTTGGTCAAGAGCCGGGTCTCTGGTCTTGTTCAATTTCTTCTCCAAATCGTAGAAATCTCCGTTCAAGTTCAGATACAAGATTGGGTGAAGCTCATAGGTGACTCTTGGCTTGAACTCGCGTCCTTCATAAGCATCAATCATTCCGGAGAGTTGGTGGTAGGTTCTGTTGACGGCTCCCCAGTAGAGATCATCCGGAGCGACTGTCTCCAATGTAGTTTGAATCCATTTTTGGTTCTCGACAAGGAAATCGGAGAGTCTGGAGCAGTATCCAGTGAAGTTCTTACAGTAATCCTCTTGAGCGTTTTTCAAATGGTATGAAAGAACGGTTTTGGAGAGGAGTCCCTCAAGATATCCAGCAGAGTAAGCTTGGAGTTGTGGGCAGTAGTTCTCCTTGGTCTCCACTTCAAGGAAGGTCCATCTGAACAGGTTTCGTTTTTTAAAGTTTAGATTTTAGATAAAAGTCAGTCACTTTTCAGTAAACATGCTTACAAA</canonical>
            <polymorphic>GCTTGTTTGGTGTGAACTTCTTGTAATCCAAAACAGCCCATTGGTTGTTGTAAGTTCCCGAGTTGTACATAGCATACAGTTTGCACCATTCTCTAGCGTCACGAGCAAGTTGGTTGGAGATAATGGCTCTCACCCAGGTTGGAAGTTGACCGACTGGTTTGGTATTCTCGAAAAGAGAAGTGTTGAAGACACTGATAGTGGTTTCGATGACAGCCTGAAAATCAGCAAAATTATGAAAATTTGATAAGTTGATAAGAAAAATGGCAACATTTCGAAGTAAACATACCAATCCAGAAGTTTGAAGTGCAAAGTCATCAGAAGAGTACAAAAGTCCTGGGTAGGAAGAGAACGATGATCCGTATCCAGGATAGAATTGACGGTCATAACCGAACTTGTAAAGCTTGATGATTCTGAGCATGTTTTGGAATCCAGACATGGTGACTTGAGAAATAAAGAGATCCGCGTTTCCTGGAGCAACCTTGATAAGTCCGGAGCATTTYCCTCCAGTTTGGTCAAGAGCCGGGTCTCTGGTCTTGTTCAATTTCTTCTCCAAATCGTAGAAATCTCCGTTCAAGTTCAGATACAAGATTGGGTGAAGCTCATAGGTGACTCTTGGCTTGAACTCGCGTCCTTCATAAGCATCAATCATTCCGGAGAGTTGGTGGTAGGTTCTGTTGACGGCTCCCCAGTAGAGATCATCCGGAGCGACTGTCTCCAATGTAGTTTGAATCCATTTTTGGTTCTCGACAAGGAAATCGGAGAGTCTGGAGCAGTATCCAGTGAAGTTCTTACAGTAATCCTCTTGAGCGTTTTTCAAATGGTATGAAAGAACGGTTTTGGAGAGGAGTCCCTCAAGATATCCAGCAGAGTAAGCTTGGAGTTGTGGGCAGTAGTTCTCCTTGGTCTCCACTTCAAGGAAGGTCCATCTGAACAGGTTTCGTTTTTTAAAGTTTAGATTTTAGATAAAAGTCAGTCACTTTTCAGTAAACATGCTTACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATCAGAAGAGTACAAAAGTCC</pcr_primer_p1>
		<pcr_primer_p2>CTACGATTTGGAGAAGAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCATCAGAAGAGTACAAAAGTCCTGGGTAGGAAGAGAACGATGATCCGTATCCAGGATAGAATTGACGGTCATAACCGAACTTGTAAAGCTTGATGATTCTGAGCATGTTTTGGAATCCAGACATGGTGACTTGAGAAATAAAGAGATCCGCGTTTCCTGGAGCAACCTTGATAAGTCCGGAGCATTTTCCTCCAGTTTGGTCAAGAGCCGGGTCTCTGGTCTTGTTCAATTTCTTCTCCAAATCGTAG</canonical_amplicon>
		<polymorphic_amplicon>TCATCAGAAGAGTACAAAAGTCCTGGGTAGGAAGAGAACGATGATCCGTATCCAGGATAGAATTGACGGTCATAACCGAACTTGTAAAGCTTGATGATTCTGAGCATGTTTTGGAATCCAGACATGGTGACTTGAGAAATAAAGAGATCCGCGTTTCCTGGAGCAACCTTGATAAGTCCGGAGCATTTYCCTCCAGTTTGGTCAAGAGCCGGGTCTCTGGTCTTGTTCAATTTCTTCTCCAAATCGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7381</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>184505</contig_pos>
        <strand>+</strand>
        <context>TAAAGAGATC[C/T]GCGTTTCCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGAGCATGTTTTGGAATCCAGACATGGTGACTTGAGAAATAAAGAGATC</left_flank>
        <right_flank>GCGTTTCCTGGAGCAACCTTGATAAGTCCGGAGCATTTTCCTCCAGTTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGCTCAAGGACGTAGAAGAGTCCATACTTGGCAAGTGGCTTGTTTGGTGTGAACTTCTTGTAATCCAAAACAGCCCATTGGTTGTTGTAAGTTCCCGAGTTGTACATAGCATACAGTTTGCACCATTCTCTAGCGTCACGAGCAAGTTGGTTGGAGATAATGGCTCTCACCCAGGTTGGAAGTTGACCGACTGGTTTGGTATTCTCGAAAAGAGAAGTGTTGAAGACACTGATAGTGGTTTCGATGACAGCCTGAAAATCAGCAAAATTATGAAAATTTGATAAGTTGATAAGAAAAATGGCAACATTTCGAAGTAAACATACCAATCCAGAAGTTTGAAGTGCAAAGTCATCAGAAGAGTACAAAAGTCCTGGGTAGGAAGAGAACGATGATCCGTATCCAGGATAGAATTGACGGTCATAACCGAACTTGTAAAGCTTGATGATTCTGAGCATGTTTTGGAATCCAGACATGGTGACTTGAGAAATAAAGAGATCCGCGTTTCCTGGAGCAACCTTGATAAGTCCGGAGCATTTTCCTCCAGTTTGGTCAAGAGCCGGGTCTCTGGTCTTGTTCAATTTCTTCTCCAAATCGTAGAAATCTCCGTTCAAGTTCAGATACAAGATTGGGTGAAGCTCATAGGTGACTCTTGGCTTGAACTCGCGTCCTTCATAAGCATCAATCATTCCGGAGAGTTGGTGGTAGGTTCTGTTGACGGCTCCCCAGTAGAGATCATCCGGAGCGACTGTCTCCAATGTAGTTTGAATCCATTTTTGGTTCTCGACAAGGAAATCGGAGAGTCTGGAGCAGTATCCAGTGAAGTTCTTACAGTAATCCTCTTGAGCGTTTTTCAAATGGTATGAAAGAACGGTTTTGGAGAGGAGTCCCTCAAGATATCCAGCAGAGTAAGCTTGGAGTTGTGGGCAGTAGTTCTCCTTGGTCTCCACTTCAAGGAAGGTCCATCTGAACAGGTTTCGTTTTTTAAAGTTTAGATTTTA</canonical>
            <polymorphic>TCTGCTCAAGGACGTAGAAGAGTCCATACTTGGCAAGTGGCTTGTTTGGTGTGAACTTCTTGTAATCCAAAACAGCCCATTGGTTGTTGTAAGTTCCCGAGTTGTACATAGCATACAGTTTGCACCATTCTCTAGCGTCACGAGCAAGTTGGTTGGAGATAATGGCTCTCACCCAGGTTGGAAGTTGACCGACTGGTTTGGTATTCTCGAAAAGAGAAGTGTTGAAGACACTGATAGTGGTTTCGATGACAGCCTGAAAATCAGCAAAATTATGAAAATTTGATAAGTTGATAAGAAAAATGGCAACATTTCGAAGTAAACATACCAATCCAGAAGTTTGAAGTGCAAAGTCATCAGAAGAGTACAAAAGTCCTGGGTAGGAAGAGAACGATGATCCGTATCCAGGATAGAATTGACGGTCATAACCGAACTTGTAAAGCTTGATGATTCTGAGCATGTTTTGGAATCCAGACATGGTGACTTGAGAAATAAAGAGATCYGCGTTTCCTGGAGCAACCTTGATAAGTCCGGAGCATTTTCCTCCAGTTTGGTCAAGAGCCGGGTCTCTGGTCTTGTTCAATTTCTTCTCCAAATCGTAGAAATCTCCGTTCAAGTTCAGATACAAGATTGGGTGAAGCTCATAGGTGACTCTTGGCTTGAACTCGCGTCCTTCATAAGCATCAATCATTCCGGAGAGTTGGTGGTAGGTTCTGTTGACGGCTCCCCAGTAGAGATCATCCGGAGCGACTGTCTCCAATGTAGTTTGAATCCATTTTTGGTTCTCGACAAGGAAATCGGAGAGTCTGGAGCAGTATCCAGTGAAGTTCTTACAGTAATCCTCTTGAGCGTTTTTCAAATGGTATGAAAGAACGGTTTTGGAGAGGAGTCCCTCAAGATATCCAGCAGAGTAAGCTTGGAGTTGTGGGCAGTAGTTCTCCTTGGTCTCCACTTCAAGGAAGGTCCATCTGAACAGGTTTCGTTTTTTAAAGTTTAGATTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 335 164</canonical_bands>
                <polymorphic_bands>665 335</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATCAGAAGAGTACAAAAGTCC</pcr_primer_p1>
		<pcr_primer_p2>CTACGATTTGGAGAAGAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCATCAGAAGAGTACAAAAGTCCTGGGTAGGAAGAGAACGATGATCCGTATCCAGGATAGAATTGACGGTCATAACCGAACTTGTAAAGCTTGATGATTCTGAGCATGTTTTGGAATCCAGACATGGTGACTTGAGAAATAAAGAGATCCGCGTTTCCTGGAGCAACCTTGATAAGTCCGGAGCATTTTCCTCCAGTTTGGTCAAGAGCCGGGTCTCTGGTCTTGTTCAATTTCTTCTCCAAATCGTAG</canonical_amplicon>
		<polymorphic_amplicon>TCATCAGAAGAGTACAAAAGTCCTGGGTAGGAAGAGAACGATGATCCGTATCCAGGATAGAATTGACGGTCATAACCGAACTTGTAAAGCTTGATGATTCTGAGCATGTTTTGGAATCCAGACATGGTGACTTGAGAAATAAAGAGATCYGCGTTTCCTGGAGCAACCTTGATAAGTCCGGAGCATTTTCCTCCAGTTTGGTCAAGAGCCGGGTCTCTGGTCTTGTTCAATTTCTTCTCCAAATCGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7382</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>184453</contig_pos>
        <strand>+</strand>
        <context>AGCTTGATGA[C/T]TCTGAGCATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTATCCAGGATAGAATTGACGGTCATAACCGAACTTGTAAAGCTTGATGA</left_flank>
        <right_flank>TCTGAGCATGTTTTGGAATCCAGACATGGTGACTTGAGAAATAAAGAGAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAATTTTATACGTTTAGCTCATCCAATTTCAGGCCTGGCGACTTACGGCATCTGCTCAAGGACGTAGAAGAGTCCATACTTGGCAAGTGGCTTGTTTGGTGTGAACTTCTTGTAATCCAAAACAGCCCATTGGTTGTTGTAAGTTCCCGAGTTGTACATAGCATACAGTTTGCACCATTCTCTAGCGTCACGAGCAAGTTGGTTGGAGATAATGGCTCTCACCCAGGTTGGAAGTTGACCGACTGGTTTGGTATTCTCGAAAAGAGAAGTGTTGAAGACACTGATAGTGGTTTCGATGACAGCCTGAAAATCAGCAAAATTATGAAAATTTGATAAGTTGATAAGAAAAATGGCAACATTTCGAAGTAAACATACCAATCCAGAAGTTTGAAGTGCAAAGTCATCAGAAGAGTACAAAAGTCCTGGGTAGGAAGAGAACGATGATCCGTATCCAGGATAGAATTGACGGTCATAACCGAACTTGTAAAGCTTGATGATTCTGAGCATGTTTTGGAATCCAGACATGGTGACTTGAGAAATAAAGAGATCCGCGTTTCCTGGAGCAACCTTGATAAGTCCGGAGCATTTTCCTCCAGTTTGGTCAAGAGCCGGGTCTCTGGTCTTGTTCAATTTCTTCTCCAAATCGTAGAAATCTCCGTTCAAGTTCAGATACAAGATTGGGTGAAGCTCATAGGTGACTCTTGGCTTGAACTCGCGTCCTTCATAAGCATCAATCATTCCGGAGAGTTGGTGGTAGGTTCTGTTGACGGCTCCCCAGTAGAGATCATCCGGAGCGACTGTCTCCAATGTAGTTTGAATCCATTTTTGGTTCTCGACAAGGAAATCGGAGAGTCTGGAGCAGTATCCAGTGAAGTTCTTACAGTAATCCTCTTGAGCGTTTTTCAAATGGTATGAAAGAACGGTTTTGGAGAGGAGTCCCTCAAGATATCCAGCAGAGTAAGCTTGGAGTTGTGGGCAGTAGTTCTCCTTGGTCTCCA</canonical>
            <polymorphic>GAAAATTTTATACGTTTAGCTCATCCAATTTCAGGCCTGGCGACTTACGGCATCTGCTCAAGGACGTAGAAGAGTCCATACTTGGCAAGTGGCTTGTTTGGTGTGAACTTCTTGTAATCCAAAACAGCCCATTGGTTGTTGTAAGTTCCCGAGTTGTACATAGCATACAGTTTGCACCATTCTCTAGCGTCACGAGCAAGTTGGTTGGAGATAATGGCTCTCACCCAGGTTGGAAGTTGACCGACTGGTTTGGTATTCTCGAAAAGAGAAGTGTTGAAGACACTGATAGTGGTTTCGATGACAGCCTGAAAATCAGCAAAATTATGAAAATTTGATAAGTTGATAAGAAAAATGGCAACATTTCGAAGTAAACATACCAATCCAGAAGTTTGAAGTGCAAAGTCATCAGAAGAGTACAAAAGTCCTGGGTAGGAAGAGAACGATGATCCGTATCCAGGATAGAATTGACGGTCATAACCGAACTTGTAAAGCTTGATGAYTCTGAGCATGTTTTGGAATCCAGACATGGTGACTTGAGAAATAAAGAGATCCGCGTTTCCTGGAGCAACCTTGATAAGTCCGGAGCATTTTCCTCCAGTTTGGTCAAGAGCCGGGTCTCTGGTCTTGTTCAATTTCTTCTCCAAATCGTAGAAATCTCCGTTCAAGTTCAGATACAAGATTGGGTGAAGCTCATAGGTGACTCTTGGCTTGAACTCGCGTCCTTCATAAGCATCAATCATTCCGGAGAGTTGGTGGTAGGTTCTGTTGACGGCTCCCCAGTAGAGATCATCCGGAGCGACTGTCTCCAATGTAGTTTGAATCCATTTTTGGTTCTCGACAAGGAAATCGGAGAGTCTGGAGCAGTATCCAGTGAAGTTCTTACAGTAATCCTCTTGAGCGTTTTTCAAATGGTATGAAAGAACGGTTTTGGAGAGGAGTCCCTCAAGATATCCAGCAGAGTAAGCTTGGAGTTGTGGGCAGTAGTTCTCCTTGGTCTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>498 302 182 18</canonical_bands>
                <polymorphic_bands>516 302 182</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATCAGAAGAGTACAAAAGTCC</pcr_primer_p1>
		<pcr_primer_p2>CTACGATTTGGAGAAGAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCATCAGAAGAGTACAAAAGTCCTGGGTAGGAAGAGAACGATGATCCGTATCCAGGATAGAATTGACGGTCATAACCGAACTTGTAAAGCTTGATGATTCTGAGCATGTTTTGGAATCCAGACATGGTGACTTGAGAAATAAAGAGATCCGCGTTTCCTGGAGCAACCTTGATAAGTCCGGAGCATTTTCCTCCAGTTTGGTCAAGAGCCGGGTCTCTGGTCTTGTTCAATTTCTTCTCCAAATCGTAG</canonical_amplicon>
		<polymorphic_amplicon>TCATCAGAAGAGTACAAAAGTCCTGGGTAGGAAGAGAACGATGATCCGTATCCAGGATAGAATTGACGGTCATAACCGAACTTGTAAAGCTTGATGAYTCTGAGCATGTTTTGGAATCCAGACATGGTGACTTGAGAAATAAAGAGATCCGCGTTTCCTGGAGCAACCTTGATAAGTCCGGAGCATTTTCCTCCAGTTTGGTCAAGAGCCGGGTCTCTGGTCTTGTTCAATTTCTTCTCCAAATCGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7383</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>250881</contig_pos>
        <strand>+</strand>
        <context>TCCAAATCCA[A/G]GTGGACAATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATTCAAATAGGGTGGAAATATCGCGAGTCGGTAGAACATCCAAATCCA</left_flank>
        <right_flank>GTGGACAATCACATCAAACTCTGTCATTGCCCATAACCTGATTTTTGTGT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAACCTACCTTGCATCCAGCCACATCCAGTTCAAGTCAAACAATGGATATGTCCACCATAACCACGGTTTTGTTGGTCCCATTGTGTAATGAATAATATCAGGATCCACCAAAAATCTTCCGTTATTCAAATAATACATTCCAATGTCATAGTTGAATTTTGCAGACAACCGTGCCATTGTAAAATTTTCACATTTTGGATGTTTTCCTGATGGATCATGCATTGGAGCGTATTTCAAGTCATGAAAATATGTATTGAGGAATCCTTGGTCTCCTCCATCATAGGATTCAGCAGTTTGTACGTGTTCCACCATGTCGTGGAAAACCTACAAAACTCCTGTACGTTTTAGCTGGAAAAAATTAATTACTCACCGTCTCATTGGTTTTCAGGACAAACACGCCGGAATTGAACATATCAGAATGTCGGAATACAGCACAGAAGGATCCACATTCAAATAGGGTGGAAATATCGCGAGTCGGTAGAACATCCAAATCCAGGTGGACAATCACATCAAACTCTGTCATTGCCCATAACCTGATTTTTGTGTACTGAAATTATGGAACTTGAAAATTGAACCAGAATCAAACACGTTACCTGATACTTCCTAGCCTTATGTGTTTTTATATATGGCGTATCAATTTTCGTGTCATTATGCACTATCACTCCTTGTTCCTTCAGCTCATTCACCGATTTTTCAGTGATATCTTGAGTCACAATTATTATATATGGAATCGATGAATTCAGTTTCTTGAGACGGTATGCTGTAAATAATTGCTGTAAAGAGTGCTGTAACAGTTTTTCTTTTTGCACTCGACGAGCTGGGTGACCGAGTGCATTATTCACTAAAGCAAACATTCCAATGTATAGTGGCCAGAGTGGGGGGGGGGGCCTTTTGTAAAGGATCACACAACAGATACATTGTGCTTTCGTAGTCTACTTTGATATTATTTCAAAATTCCAATTTTTCAACTCACCAAGAACTTTTGCCGGTATCAGA</canonical>
            <polymorphic>AAAAAACCTACCTTGCATCCAGCCACATCCAGTTCAAGTCAAACAATGGATATGTCCACCATAACCACGGTTTTGTTGGTCCCATTGTGTAATGAATAATATCAGGATCCACCAAAAATCTTCCGTTATTCAAATAATACATTCCAATGTCATAGTTGAATTTTGCAGACAACCGTGCCATTGTAAAATTTTCACATTTTGGATGTTTTCCTGATGGATCATGCATTGGAGCGTATTTCAAGTCATGAAAATATGTATTGAGGAATCCTTGGTCTCCTCCATCATAGGATTCAGCAGTTTGTACGTGTTCCACCATGTCGTGGAAAACCTACAAAACTCCTGTACGTTTTAGCTGGAAAAAATTAATTACTCACCGTCTCATTGGTTTTCAGGACAAACACGCCGGAATTGAACATATCAGAATGTCGGAATACAGCACAGAAGGATCCACATTCAAATAGGGTGGAAATATCGCGAGTCGGTAGAACATCCAAATCCARGTGGACAATCACATCAAACTCTGTCATTGCCCATAACCTGATTTTTGTGTACTGAAATTATGGAACTTGAAAATTGAACCAGAATCAAACACGTTACCTGATACTTCCTAGCCTTATGTGTTTTTATATATGGCGTATCAATTTTCGTGTCATTATGCACTATCACTCCTTGTTCCTTCAGCTCATTCACCGATTTTTCAGTGATATCTTGAGTCACAATTATTATATATGGAATCGATGAATTCAGTTTCTTGAGACGGTATGCTGTAAATAATTGCTGTAAAGAGTGCTGTAACAGTTTTTCTTTTTGCACTCGACGAGCTGGGTGACCGAGTGCATTATTCACTAAAGCAAACATTCCAATGTATAGTGGCCAGAGTGGGGGGGGGGGCCTTTTGTAAAGGATCACACAACAGATACATTGTGCTTTCGTAGTCTACTTTGATATTATTTCAAAATTCCAATTTTTCAACTCACCAAGAACTTTTGCCGGTATCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>383 319 178 120</canonical_bands>
                <polymorphic_bands>561 319 120</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTAATTACTCACCGTCTCA</pcr_primer_p1>
		<pcr_primer_p2>GTATCAGGTAACGTGTTTGATTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAATTAATTACTCACCGTCTCATTGGTTTTCAGGACAAACACGCCGGAATTGAACATATCAGAATGTCGGAATACAGCACAGAAGGATCCACATTCAAATAGGGTGGAAATATCGCGAGTCGGTAGAACATCCAAATCCAGGTGGACAATCACATCAAACTCTGTCATTGCCCATAACCTGATTTTTGTGTACTGAAATTATGGAACTTGAAAATTGAACCAGAATCAAACACGTTACCTGATAC</canonical_amplicon>
		<polymorphic_amplicon>AAAATTAATTACTCACCGTCTCATTGGTTTTCAGGACAAACACGCCGGAATTGAACATATCAGAATGTCGGAATACAGCACAGAAGGATCCACATTCAAATAGGGTGGAAATATCGCGAGTCGGTAGAACATCCAAATCCARGTGGACAATCACATCAAACTCTGTCATTGCCCATAACCTGATTTTTGTGTACTGAAATTATGGAACTTGAAAATTGAACCAGAATCAAACACGTTACCTGATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7384</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>254728</contig_pos>
        <strand>+</strand>
        <context>GATTGATTAT[A/C]AGCCAAAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATGTTTTAGTGAGTTTGAAGTTAAAAAGATTCTAAAAATGATTGATTAT</left_flank>
        <right_flank>AGCCAAAAGACGGGGATGACGAGGAAGAAGTCATCGAAGCAGACTATACC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAATTTGAAACTCACACCGCTTGCCTTGGCGGCTAGACTTGCCAAGAAGCAGATATACGATTTGATCTTGGAGTGTGATATGGATATCTCATGGAGATACGGACCAGTGGTTTGCAAAGCTTACCCGCTGAATGATGTGGACACTATCAATGAAAGCGATGGTTCGTTGAACCCGAATTCCGTGATCGCGAATGTAGTTTACGGAGTGAGTTCTCTTTTTTTCCTCTTTCTGTAATTGTTTACCCACTTCTTGATCTCTATTTTTCTTCCAACTACACGTGTTGAGTACAGGACAAAGTGGAGCATTTGGAATTCTTTGACGGGCTCATCGAGGAGATTCTGGAGAGCAAATGGCAGACGTTCGGCAAGAAACAGCTGTTTATGTCGCTAGCGGGATACATTTATTTTTTGGCAGTGTTCTATTTAGCATTTATGACTAGAGATGCTCATGTTTTAGTGAGTTTGAAGTTAAAAAGATTCTAAAAATGATTGATTATCAGCCAAAAGACGGGGATGACGAGGAAGAAGTCATCGAAGCAGACTATACCAATTATACAGAAATATTGAGTGCTGGACTGAGTTTGAGAGAGCACTTGGCAATAGCCAGATTAGCAGAAAGGAAAGTTCTACCTGCTCACTGCCATCTATGGGATTATTCCGGCCCATCTCAACAGGTTTGAAAAACTGGTCTAAATTCATTAGAACAAGTTTTATAGATCCGAATGATATGCGAAATCCTCTGCCTTCTTGCTGTTGTTGTGAGAACATTCAAAGATTGTATTGACGCGCATCGCACTGGTTTTAGTCGATGGTGGAACTCGATTGTCAGAGAACATCTTTTTTTTTCATTTCTATTTTATAATTTTAGAAAGCATTCCCGGAAAAAGTACTACATAAATGCTGTCAACTATTGGTGATATGTACAATTCCACTTCGACTCGGATGTTATTTAGATGATAGCTTTTTGGTGATTGAGAATTTCATGGTTGTCTGTATTG</canonical>
            <polymorphic>AATAATTTGAAACTCACACCGCTTGCCTTGGCGGCTAGACTTGCCAAGAAGCAGATATACGATTTGATCTTGGAGTGTGATATGGATATCTCATGGAGATACGGACCAGTGGTTTGCAAAGCTTACCCGCTGAATGATGTGGACACTATCAATGAAAGCGATGGTTCGTTGAACCCGAATTCCGTGATCGCGAATGTAGTTTACGGAGTGAGTTCTCTTTTTTTCCTCTTTCTGTAATTGTTTACCCACTTCTTGATCTCTATTTTTCTTCCAACTACACGTGTTGAGTACAGGACAAAGTGGAGCATTTGGAATTCTTTGACGGGCTCATCGAGGAGATTCTGGAGAGCAAATGGCAGACGTTCGGCAAGAAACAGCTGTTTATGTCGCTAGCGGGATACATTTATTTTTTGGCAGTGTTCTATTTAGCATTTATGACTAGAGATGCTCATGTTTTAGTGAGTTTGAAGTTAAAAAGATTCTAAAAATGATTGATTATMAGCCAAAAGACGGGGATGACGAGGAAGAAGTCATCGAAGCAGACTATACCAATTATACAGAAATATTGAGTGCTGGACTGAGTTTGAGAGAGCACTTGGCAATAGCCAGATTAGCAGAAAGGAAAGTTCTACCTGCTCACTGCCATCTATGGGATTATTCCGGCCCATCTCAACAGGTTTGAAAAACTGGTCTAAATTCATTAGAACAAGTTTTATAGATCCGAATGATATGCGAAATCCTCTGCCTTCTTGCTGTTGTTGTGAGAACATTCAAAGATTGTATTGACGCGCATCGCACTGGTTTTAGTCGATGGTGGAACTCGATTGTCAGAGAACATCTTTTTTTTTCATTTCTATTTTATAATTTTAGAAAGCATTCCCGGAAAAAGTACTACATAAATGCTGTCAACTATTGGTGATATGTACAATTCCACTTCGACTCGGATGTTATTTAGATGATAGCTTTTTGGTGATTGAGAATTTCATGGTTGTCTGTATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGATGCTCATGTTTTAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>AGTTTTTCAAACCTGTTGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGAGATGCTCATGTTTTAGTGAGTTTGAAGTTAAAAAGATTCTAAAAATGATTGATTATCAGCCAAAAGACGGGGATGACGAGGAAGAAGTCATCGAAGCAGACTATACCAATTATACAGAAATATTGAGTGCTGGACTGAGTTTGAGAGAGCACTTGGCAATAGCCAGATTAGCAGAAAGGAAAGTTCTACCTGCTCACTGCCATCTATGGGATTATTCCGGCCCATCTCAACAGGTTTGAAAAACT</canonical_amplicon>
		<polymorphic_amplicon>AGAGATGCTCATGTTTTAGTGAGTTTGAAGTTAAAAAGATTCTAAAAATGATTGATTATMAGCCAAAAGACGGGGATGACGAGGAAGAAGTCATCGAAGCAGACTATACCAATTATACAGAAATATTGAGTGCTGGACTGAGTTTGAGAGAGCACTTGGCAATAGCCAGATTAGCAGAAAGGAAAGTTCTACCTGCTCACTGCCATCTATGGGATTATTCCGGCCCATCTCAACAGGTTTGAAAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7385</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>254542</contig_pos>
        <strand>+</strand>
        <context>AGCATTTGGA[A/G]TTCTTTGACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCTTCCAACTACACGTGTTGAGTACAGGACAAAGTGGAGCATTTGGA</left_flank>
        <right_flank>TTCTTTGACGGGCTCATCGAGGAGATTCTGGAGAGCAAATGGCAGACGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGTACCCATTGTCATTCGCAGCGTGTACAAACCAAGTGGATTGTTTTCGGCTTCTTCGCGCAATGAAAGCCGACCCCAACATGCCTGATACCAATGGAAATACAGTACTCCATTTGGCAGTGATACACGATTTACCAGAAATGTTCATGTTGGCTGTGGAACTTGGGGCTAATCTTCATGTCAGAAATAATTTGAAACTCACACCGCTTGCCTTGGCGGCTAGACTTGCCAAGAAGCAGATATACGATTTGATCTTGGAGTGTGATATGGATATCTCATGGAGATACGGACCAGTGGTTTGCAAAGCTTACCCGCTGAATGATGTGGACACTATCAATGAAAGCGATGGTTCGTTGAACCCGAATTCCGTGATCGCGAATGTAGTTTACGGAGTGAGTTCTCTTTTTTTCCTCTTTCTGTAATTGTTTACCCACTTCTTGATCTCTATTTTTCTTCCAACTACACGTGTTGAGTACAGGACAAAGTGGAGCATTTGGAATTCTTTGACGGGCTCATCGAGGAGATTCTGGAGAGCAAATGGCAGACGTTCGGCAAGAAACAGCTGTTTATGTCGCTAGCGGGATACATTTATTTTTTGGCAGTGTTCTATTTAGCATTTATGACTAGAGATGCTCATGTTTTAGTGAGTTTGAAGTTAAAAAGATTCTAAAAATGATTGATTATCAGCCAAAAGACGGGGATGACGAGGAAGAAGTCATCGAAGCAGACTATACCAATTATACAGAAATATTGAGTGCTGGACTGAGTTTGAGAGAGCACTTGGCAATAGCCAGATTAGCAGAAAGGAAAGTTCTACCTGCTCACTGCCATCTATGGGATTATTCCGGCCCATCTCAACAGGTTTGAAAAACTGGTCTAAATTCATTAGAACAAGTTTTATAGATCCGAATGATATGCGAAATCCTCTGCCTTCTTGCTGTTGTTGTGAGAACATTCAAAGATTGTATTGACGCGCATCGCACTGGTTTTAGTCGATGG</canonical>
            <polymorphic>GAGTACCCATTGTCATTCGCAGCGTGTACAAACCAAGTGGATTGTTTTCGGCTTCTTCGCGCAATGAAAGCCGACCCCAACATGCCTGATACCAATGGAAATACAGTACTCCATTTGGCAGTGATACACGATTTACCAGAAATGTTCATGTTGGCTGTGGAACTTGGGGCTAATCTTCATGTCAGAAATAATTTGAAACTCACACCGCTTGCCTTGGCGGCTAGACTTGCCAAGAAGCAGATATACGATTTGATCTTGGAGTGTGATATGGATATCTCATGGAGATACGGACCAGTGGTTTGCAAAGCTTACCCGCTGAATGATGTGGACACTATCAATGAAAGCGATGGTTCGTTGAACCCGAATTCCGTGATCGCGAATGTAGTTTACGGAGTGAGTTCTCTTTTTTTCCTCTTTCTGTAATTGTTTACCCACTTCTTGATCTCTATTTTTCTTCCAACTACACGTGTTGAGTACAGGACAAAGTGGAGCATTTGGARTTCTTTGACGGGCTCATCGAGGAGATTCTGGAGAGCAAATGGCAGACGTTCGGCAAGAAACAGCTGTTTATGTCGCTAGCGGGATACATTTATTTTTTGGCAGTGTTCTATTTAGCATTTATGACTAGAGATGCTCATGTTTTAGTGAGTTTGAAGTTAAAAAGATTCTAAAAATGATTGATTATCAGCCAAAAGACGGGGATGACGAGGAAGAAGTCATCGAAGCAGACTATACCAATTATACAGAAATATTGAGTGCTGGACTGAGTTTGAGAGAGCACTTGGCAATAGCCAGATTAGCAGAAAGGAAAGTTCTACCTGCTCACTGCCATCTATGGGATTATTCCGGCCCATCTCAACAGGTTTGAAAAACTGGTCTAAATTCATTAGAACAAGTTTTATAGATCCGAATGATATGCGAAATCCTCTGCCTTCTTGCTGTTGTTGTGAGAACATTCAAAGATTGTATTGACGCGCATCGCACTGGTTTTAGTCGATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>382 363 135 120</canonical_bands>
                <polymorphic_bands>517 363 120</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>502 363 135</canonical_bands>
                <polymorphic_bands>637 363</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>238 189 174 144 120 77 58</canonical_bands>
                <polymorphic_bands>315 189 174 144 120 58</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATGTAGTTTACGGAGTGAGTT</pcr_primer_p1>
		<pcr_primer_p2>CATAAATGCTAAATAGAACACTGC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAATGTAGTTTACGGAGTGAGTTCTCTTTTTTTCCTCTTTCTGTAATTGTTTACCCACTTCTTGATCTCTATTTTTCTTCCAACTACACGTGTTGAGTACAGGACAAAGTGGAGCATTTGGAATTCTTTGACGGGCTCATCGAGGAGATTCTGGAGAGCAAATGGCAGACGTTCGGCAAGAAACAGCTGTTTATGTCGCTAGCGGGATACATTTATTTTTTGGCAGTGTTCTATTTAGCATTTATG</canonical_amplicon>
		<polymorphic_amplicon>GAATGTAGTTTACGGAGTGAGTTCTCTTTTTTTCCTCTTTCTGTAATTGTTTACCCACTTCTTGATCTCTATTTTTCTTCCAACTACACGTGTTGAGTACAGGACAAAGTGGAGCATTTGGARTTCTTTGACGGGCTCATCGAGGAGATTCTGGAGAGCAAATGGCAGACGTTCGGCAAGAAACAGCTGTTTATGTCGCTAGCGGGATACATTTATTTTTTGGCAGTGTTCTATTTAGCATTTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7386</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>254455</contig_pos>
        <strand>+</strand>
        <context>CTTTTTTTCC[G/T]CTTTCTGTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAATTCCGTGATCGCGAATGTAGTTTACGGAGTGAGTTCTCTTTTTTTCC</left_flank>
        <right_flank>CTTTCTGTAATTGTTTACCCACTTCTTGATCTCTATTTTTCTTCCAACTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTAAGTATCAAACTACATAACCTTGACTCAAAAAAACACAAAGCGAAAGTTCATAAAGTTGTATTTGAAGACAAATGTACTGGGGCGAGTACCCATTGTCATTCGCAGCGTGTACAAACCAAGTGGATTGTTTTCGGCTTCTTCGCGCAATGAAAGCCGACCCCAACATGCCTGATACCAATGGAAATACAGTACTCCATTTGGCAGTGATACACGATTTACCAGAAATGTTCATGTTGGCTGTGGAACTTGGGGCTAATCTTCATGTCAGAAATAATTTGAAACTCACACCGCTTGCCTTGGCGGCTAGACTTGCCAAGAAGCAGATATACGATTTGATCTTGGAGTGTGATATGGATATCTCATGGAGATACGGACCAGTGGTTTGCAAAGCTTACCCGCTGAATGATGTGGACACTATCAATGAAAGCGATGGTTCGTTGAACCCGAATTCCGTGATCGCGAATGTAGTTTACGGAGTGAGTTCTCTTTTTTTCCTCTTTCTGTAATTGTTTACCCACTTCTTGATCTCTATTTTTCTTCCAACTACACGTGTTGAGTACAGGACAAAGTGGAGCATTTGGAATTCTTTGACGGGCTCATCGAGGAGATTCTGGAGAGCAAATGGCAGACGTTCGGCAAGAAACAGCTGTTTATGTCGCTAGCGGGATACATTTATTTTTTGGCAGTGTTCTATTTAGCATTTATGACTAGAGATGCTCATGTTTTAGTGAGTTTGAAGTTAAAAAGATTCTAAAAATGATTGATTATCAGCCAAAAGACGGGGATGACGAGGAAGAAGTCATCGAAGCAGACTATACCAATTATACAGAAATATTGAGTGCTGGACTGAGTTTGAGAGAGCACTTGGCAATAGCCAGATTAGCAGAAAGGAAAGTTCTACCTGCTCACTGCCATCTATGGGATTATTCCGGCCCATCTCAACAGGTTTGAAAAACTGGTCTAAATTCATTAGAACAAGTTTTATAGATCCGAATG</canonical>
            <polymorphic>GGTAAGTATCAAACTACATAACCTTGACTCAAAAAAACACAAAGCGAAAGTTCATAAAGTTGTATTTGAAGACAAATGTACTGGGGCGAGTACCCATTGTCATTCGCAGCGTGTACAAACCAAGTGGATTGTTTTCGGCTTCTTCGCGCAATGAAAGCCGACCCCAACATGCCTGATACCAATGGAAATACAGTACTCCATTTGGCAGTGATACACGATTTACCAGAAATGTTCATGTTGGCTGTGGAACTTGGGGCTAATCTTCATGTCAGAAATAATTTGAAACTCACACCGCTTGCCTTGGCGGCTAGACTTGCCAAGAAGCAGATATACGATTTGATCTTGGAGTGTGATATGGATATCTCATGGAGATACGGACCAGTGGTTTGCAAAGCTTACCCGCTGAATGATGTGGACACTATCAATGAAAGCGATGGTTCGTTGAACCCGAATTCCGTGATCGCGAATGTAGTTTACGGAGTGAGTTCTCTTTTTTTCCKCTTTCTGTAATTGTTTACCCACTTCTTGATCTCTATTTTTCTTCCAACTACACGTGTTGAGTACAGGACAAAGTGGAGCATTTGGAATTCTTTGACGGGCTCATCGAGGAGATTCTGGAGAGCAAATGGCAGACGTTCGGCAAGAAACAGCTGTTTATGTCGCTAGCGGGATACATTTATTTTTTGGCAGTGTTCTATTTAGCATTTATGACTAGAGATGCTCATGTTTTAGTGAGTTTGAAGTTAAAAAGATTCTAAAAATGATTGATTATCAGCCAAAAGACGGGGATGACGAGGAAGAAGTCATCGAAGCAGACTATACCAATTATACAGAAATATTGAGTGCTGGACTGAGTTTGAGAGAGCACTTGGCAATAGCCAGATTAGCAGAAAGGAAAGTTCTACCTGCTCACTGCCATCTATGGGATTATTCCGGCCCATCTCAACAGGTTTGAAAAACTGGTCTAAATTCATTAGAACAAGTTTTATAGATCCGAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATACGATTTGATCTTGGAGTG</pcr_primer_p1>
		<pcr_primer_p2>CACTTTGTCCTGTACTCAACAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATATACGATTTGATCTTGGAGTGTGATATGGATATCTCATGGAGATACGGACCAGTGGTTTGCAAAGCTTACCCGCTGAATGATGTGGACACTATCAATGAAAGCGATGGTTCGTTGAACCCGAATTCCGTGATCGCGAATGTAGTTTACGGAGTGAGTTCTCTTTTTTTCCTCTTTCTGTAATTGTTTACCCACTTCTTGATCTCTATTTTTCTTCCAACTACACGTGTTGAGTACAGGACAAAGTG</canonical_amplicon>
		<polymorphic_amplicon>ATATACGATTTGATCTTGGAGTGTGATATGGATATCTCATGGAGATACGGACCAGTGGTTTGCAAAGCTTACCCGCTGAATGATGTGGACACTATCAATGAAAGCGATGGTTCGTTGAACCCGAATTCCGTGATCGCGAATGTAGTTTACGGAGTGAGTTCTCTTTTTTTCCKCTTTCTGTAATTGTTTACCCACTTCTTGATCTCTATTTTTCTTCCAACTACACGTGTTGAGTACAGGACAAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7387</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>274183</contig_pos>
        <strand>+</strand>
        <context>AACTACAAAA[A/T]GTGATAACAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTGAAGGGCGTGAGCAGGGAACCATGCGCGGGATAAAAAACTACAAAA</left_flank>
        <right_flank>GTGATAACATGTGAGACGAAATTACGACTTGAACATGAAAATACAAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCTAAAAAACGCATTCCGTGGCTCGATTGGCATCATTCGCAGTTAGAAGATCTTTTTTTTTTTCTCTGAAATACATTTCTTAAAACTCAATGAGAGTTCTTCCATCCCATTCTAGACCACATAACTGAAAACGGTCCATCTGCAGCGTTTTGATCGGTTCTGGAAAAGTGGTCTTTCTAACAGGGGGACTAATCACTCTGATTTGAAAAAATCGTAGTTTGAAAATTTCGAAAATTGTTTTTTACAAAAGCAAAGTGAAAAAATGGAAATGGATGAGGAAGCTCGATTAAATGAATATCAAGAAAGATAAGATAAGTGAATACTTGGTATTTGAAATTTTCGGTGGGGAAGGGTAAAGAGGGGCTCCAAAAGAGTAATGATCCGGGAAAATTGAAAAATGAGACAAAAAAACATGACAACAGTGAAAACCAATGAGAATTCCGTAAATTTTGAAGGGCGTGAGCAGGGAACCATGCGCGGGATAAAAAACTACAAAAAGTGATAACATGTGAGACGAAATTACGACTTGAACATGAAAATACAAAAAATAGTAGGGAGTAAAGTGTGGGATGAAGTGAATACGGGATGAAAGAAGTGAAAGGGGAAGAGCCTATTCAACAGAATGAAAAAAGAAAGCGATGATTTGCAGGAATACCCGATCCAGGGGGAAGTTTATCATGGATCATTGCTCAAAGAGCGCAACAGCAGGCTTGAAGTCGCATAAAGAAGTTCATGAAGTCATGGACTTAGACTGGCCAAAGGTTCTTGACCGAGCAGCAAGTGTTGTGGATTGCCTTTCCAGTAAAACTCTGAAATTGACAAGTTGAAAATTGGCATCATCTTAAAATACTACTTACATTCATCACCTCTCCATCGAGTTTCAGCCATTGAATATCGAATGAGCTTTGCATGGCGTATGCCATACGCTCAAGTTCTTTGGCAAAGCGGACAAAGAAGTAGTGGATAGTGCCTTCCTTGGTGACAAGGCAGAGGGCTGG</canonical>
            <polymorphic>AATCTAAAAAACGCATTCCGTGGCTCGATTGGCATCATTCGCAGTTAGAAGATCTTTTTTTTTTTCTCTGAAATACATTTCTTAAAACTCAATGAGAGTTCTTCCATCCCATTCTAGACCACATAACTGAAAACGGTCCATCTGCAGCGTTTTGATCGGTTCTGGAAAAGTGGTCTTTCTAACAGGGGGACTAATCACTCTGATTTGAAAAAATCGTAGTTTGAAAATTTCGAAAATTGTTTTTTACAAAAGCAAAGTGAAAAAATGGAAATGGATGAGGAAGCTCGATTAAATGAATATCAAGAAAGATAAGATAAGTGAATACTTGGTATTTGAAATTTTCGGTGGGGAAGGGTAAAGAGGGGCTCCAAAAGAGTAATGATCCGGGAAAATTGAAAAATGAGACAAAAAAACATGACAACAGTGAAAACCAATGAGAATTCCGTAAATTTTGAAGGGCGTGAGCAGGGAACCATGCGCGGGATAAAAAACTACAAAAWGTGATAACATGTGAGACGAAATTACGACTTGAACATGAAAATACAAAAAATAGTAGGGAGTAAAGTGTGGGATGAAGTGAATACGGGATGAAAGAAGTGAAAGGGGAAGAGCCTATTCAACAGAATGAAAAAAGAAAGCGATGATTTGCAGGAATACCCGATCCAGGGGGAAGTTTATCATGGATCATTGCTCAAAGAGCGCAACAGCAGGCTTGAAGTCGCATAAAGAAGTTCATGAAGTCATGGACTTAGACTGGCCAAAGGTTCTTGACCGAGCAGCAAGTGTTGTGGATTGCCTTTCCAGTAAAACTCTGAAATTGACAAGTTGAAAATTGGCATCATCTTAAAATACTACTTACATTCATCACCTCTCCATCGAGTTTCAGCCATTGAATATCGAATGAGCTTTGCATGGCGTATGCCATACGCTCAAGTTCTTTGGCAAAGCGGACAAAGAAGTAGTGGATAGTGCCTTCCTTGGTGACAAGGCAGAGGGCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTGAAAAATGAGACAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCATTCTGTTGAATAGGCTCT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTGAAAAATGAGACAAAAAAACATGACAACAGTGAAAACCAATGAGAATTCCGTAAATTTTGAAGGGCGTGAGCAGGGAACCATGCGCGGGATAAAAAACTACAAAAAGTGATAACATGTGAGACGAAATTACGACTTGAACATGAAAATACAAAAAATAGTAGGGAGTAAAGTGTGGGATGAAGTGAATACGGGATGAAAGAAGTGAAAGGGGAAGAGCCTATTCAACAGAATGAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTGAAAAATGAGACAAAAAAACATGACAACAGTGAAAACCAATGAGAATTCCGTAAATTTTGAAGGGCGTGAGCAGGGAACCATGCGCGGGATAAAAAACTACAAAAWGTGATAACATGTGAGACGAAATTACGACTTGAACATGAAAATACAAAAAATAGTAGGGAGTAAAGTGTGGGATGAAGTGAATACGGGATGAAAGAAGTGAAAGGGGAAGAGCCTATTCAACAGAATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7388</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>289901</contig_pos>
        <strand></strand>
        <context>TGATTATTGG[C/T]TCCAAAAATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAGAAAAATAGAAAAACTTTTAAAATTTTTTTTAAACCTTGATTATTGG</left_flank>
        <right_flank>TCCAAAAATCGAGAAAATCTCATTTTTGAGCAGGGATGTGCCTTTTCGGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCTTCACTGAAATATTCTACCCGGATGTGATAGAGGAATTCGAAACTGATTACATCACACCGTTCTATGAGGAACTGCAAAAAAGGTGGGAGAAATGTTTTTTTTTTGTTTTTGAAATGGATATCATCTTTTGGCGGTTAGATCAAAAGTTTGAGTGACGCGCAACACGATAGCCTGTCAAACGTCACATATTGGTTTACCACTGGTATTGACGAGGTAAAAATAAATAATACTTGTCGACGGGATGAAAGGCAGTAGTTTTTGTGGTTTTGGGCATTCCTAAGACTAAAGAATTGGCGGAGAACTTTGTAGTAGTGTTGAACTTGGCAACATTGTTTAAATGTTCTTGTTTTCAACTTCGTTTCAAAAAACAATGAATTTTGCAGAATCATTATATTTAAAGAGGGACTCCGAAATAAATTCATTTTGTCAAAATGTGCCAATTCAGATAGAAAAATAGAAAAACTTTTAAAATTTTTTTTAAACCTTGATTATTGGCTCCAAAAATCGAGAAAATCTCATTTTTGAGCAGGGATGTGCCTTTTCGGAATTTTTTCAAAATTTCGAAAATTCCGATTTTCCAATTTTCGGAAAATTCCGATTTTCCAATTTTCGGAAAATTCCGATTTTTTAATTTCGGACTCTTGGAATCTCGGAATATTCCGCTGATTGAAAATGTGGAATTTCGGAAGTTTTGAAACTTTCTAAATTTTAGAATTATGAAGAAGAAATTCCATTTTACATCACAAAAACGCCAAAACTGGTGATAACACACTCTATACGTTCATTTTGAGTTAAATTATGTCGATTTCTGTGGAAGACATTAAAAATTTGTGAACTAAAAAATTATTAATCATAAAATACTCTATATTTTATCAGTTGACAAATTTTTGATATCTTCCACAGTAATTGAGATAATTGAGCTCAAAGCTGACGGTTCGGATAATGATCTTTGGGAAACACTGTGAATTTAATCTCAAAAACAAAAAACTAAATCTC</canonical>
            <polymorphic>GCCTTCACTGAAATATTCTACCCGGATGTGATAGAGGAATTCGAAACTGATTACATCACACCGTTCTATGAGGAACTGCAAAAAAGGTGGGAGAAATGTTTTTTTTTTGTTTTTGAAATGGATATCATCTTTTGGCGGTTAGATCAAAAGTTTGAGTGACGCGCAACACGATAGCCTGTCAAACGTCACATATTGGTTTACCACTGGTATTGACGAGGTAAAAATAAATAATACTTGTCGACGGGATGAAAGGCAGTAGTTTTTGTGGTTTTGGGCATTCCTAAGACTAAAGAATTGGCGGAGAACTTTGTAGTAGTGTTGAACTTGGCAACATTGTTTAAATGTTCTTGTTTTCAACTTCGTTTCAAAAAACAATGAATTTTGCAGAATCATTATATTTAAAGAGGGACTCCGAAATAAATTCATTTTGTCAAAATGTGCCAATTCAGATAGAAAAATAGAAAAACTTTTAAAATTTTTTTTAAACCTTGATTATTGGYTCCAAAAATCGAGAAAATCTCATTTTTGAGCAGGGATGTGCCTTTTCGGAATTTTTTCAAAATTTCGAAAATTCCGATTTTCCAATTTTCGGAAAATTCCGATTTTCCAATTTTCGGAAAATTCCGATTTTTTAATTTCGGACTCTTGGAATCTCGGAATATTCCGCTGATTGAAAATGTGGAATTTCGGAAGTTTTGAAACTTTCTAAATTTTAGAATTATGAAGAAGAAATTCCATTTTACATCACAAAAACGCCAAAACTGGTGATAACACACTCTATACGTTCATTTTGAGTTAAATTATGTCGATTTCTGTGGAAGACATTAAAAATTTGTGAACTAAAAAATTATTAATCATAAAATACTCTATATTTTATCAGTTGACAAATTTTTGATATCTTCCACAGTAATTGAGATAATTGAGCTCAAAGCTGACGGTTCGGATAATGATCTTTGGGAAACACTGTGAATTTAATCTCAAAAACAAAAAACTAAATCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>425 325 174 69 7</canonical_bands>
                <polymorphic_bands>750 174 69 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCAATTCAGATAGAAAAATAGA</pcr_primer_p1>
		<pcr_primer_p2>ACAGTGTTTCCCAAAGATCA</pcr_primer_p2>
		<pcr_amplicon_size>528</pcr_amplicon_size>
		<canonical_amplicon>GCCAATTCAGATAGAAAAATAGAAAAACTTTTAAAATTTTTTTTAAACCTTGATTATTGGCTCCAAAAATCGAGAAAATCTCATTTTTGAGCAGGGATGTGCCTTTTCGGAATTTTTTCAAAATTTCGAAAATTCCGATTTTCCAATTTTCGGAAAATTCCGATTTTCCAATTTTCGGAAAATTCCGATTTTTTAATTTCGGACTCTTGGAATCTCGGAATATTCCGCTGATTGAAAATGTGGAATTTCGGAAGTTTTGAAACTTTCTAAATTTTAGAATTATGAAGAAGAAATTCCATTTTACATCACAAAAACGCCAAAACTGGTGATAACACACTCTATACGTTCATTTTGAGTTAAATTATGTCGATTTCTGTGGAAGACATTAAAAATTTGTGAACTAAAAAATTATTAATCATAAAATACTCTATATTTTATCAGTTGACAAATTTTTGATATCTTCCACAGTAATTGAGATAATTGAGCTCAAAGCTGACGGTTCGGATAATGATCTTTGGGAAACACTGT</canonical_amplicon>
		<polymorphic_amplicon>GCCAATTCAGATAGAAAAATAGAAAAACTTTTAAAATTTTTTTTAAACCTTGATTATTGGYTCCAAAAATCGAGAAAATCTCATTTTTGAGCAGGGATGTGCCTTTTCGGAATTTTTTCAAAATTTCGAAAATTCCGATTTTCCAATTTTCGGAAAATTCCGATTTTCCAATTTTCGGAAAATTCCGATTTTTTAATTTCGGACTCTTGGAATCTCGGAATATTCCGCTGATTGAAAATGTGGAATTTCGGAAGTTTTGAAACTTTCTAAATTTTAGAATTATGAAGAAGAAATTCCATTTTACATCACAAAAACGCCAAAACTGGTGATAACACACTCTATACGTTCATTTTGAGTTAAATTATGTCGATTTCTGTGGAAGACATTAAAAATTTGTGAACTAAAAAATTATTAATCATAAAATACTCTATATTTTATCAGTTGACAAATTTTTGATATCTTCCACAGTAATTGAGATAATTGAGCTCAAAGCTGACGGTTCGGATAATGATCTTTGGGAAACACTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7389</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>295033</contig_pos>
        <strand>+</strand>
        <context>ATKGTTTTSG[G/T]CATCTGCCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGCTAGTGGCATCCGACACAAATCTGAAATCCAATTTTTGATTGTTTTCG</left_flank>
        <right_flank>CATCTGCCACAGCACTCACTCCTCTCTGAACATATCACCCCATCCCGGTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGAGCTTCTTTCTGAAATCGACAAATAGTTGAAAAACTAGGTATTTTCAAAAACTTCTGTGAATGCAAGTTTTTTAATTTACGTATGTTTTGAACCCTCGACAGTTTTCAAGGTGTTTGGAAGGTGTTTGAAAACTTGACAGCTCAGGACTTTTGAAACTGGTCAAAATAGCTGAAATCAACTGAAAATGACGTTTTTGTATATCTTATTGATCAGTACTTTAGAATTCTTGGTTCAGTTTTTATCAGTTTATTTGTCTCTACCTTTACTCCAGCAGCCAGTGCAAATCCACCACCTAACAAGAAAAGCACACTCCATGGGAATCTATCTTGCACTGTTGCCCAATCAAGAAGACCACTGCTAGCTTTCTGAGCCTCGTTTTTGTTTCTTCCTCTCAAATTTGGAAGCTTTTCCGGAAGAGTGAAGAGCAGAATGACAATGAACATTGCGCTAGTGGCATCCGACACAAATCTGAAATCCAATTTTTGATTGTTTTCGGCATCTGCCACAGCACTCACTCCTCTCTGAACATATCACCCCATCCCGGTACAACTTGTGGCTCTCGGAGGATCCATAAAAGAAGAAGAAGTGCGAAACAGAACACGACTGAGATTTCGGCAAATGAGAGATTGTTGAGCTCATTGTATTTTTGTTGTAGTTTTCTGTTGACGATGATAGATCCCTTTGGAGCTCCGCGGAGATAGAGAAGGTACAGAACGCACCTGAAAACATTTTTGGAGGTCAGATGCATATGATTATGATGAAAAAATGTACCAGCAGTAGATGAGGCAGCAGAAAACCATCGGGAATGCAAAAATCAGCCAGGATAAGAAATTGACTCCAGTATCGGCACCGGGGAAGAGTCTGGAACAAGGGAAAAATTTTACAGATTTTACGGTAATTTTGATATTTTTGAAAATTTTCGGGCTGTCGTAAAATCCGTAAAACCCATAAAATTAGCAAAATGACGGTGTTTGTCACAATAATTAGTTTCTTCGG</canonical>
            <polymorphic>AGGAGCTTCTTTCTGAAATCGACAAATAGTTGAAAAACTAGGTATTTTCAAAAACTTCTGTGAATGCAAGTTTTTTAATTTACGTATGTTTTGAACCCTCGACAGTTTTCAAGGTGTTTGGAAGGTGTTTGAAAACTTGACAGCTCAGGACTTTTGAAACTGGTCAAAATAGCTGAAATCAACTGAAAATGACGTTTTTGTATATCTTATTGATCAGTACTTTAGAATTCTTGGTTCAGTTTTTATCAGTTTATTTGTCTCTACCTTTACTCCAGCAGCCAGTGCAAATCCACCACCTAACAAGAAAAGCACACTCCATGGGAATCTATCTTGCACTGTTGCCCAATCAAGAAGACCACTGCTAGCTTTCTGAGCCTCGTTTTTGTTTCTTCCTCTCAAATTTGGAAGCTTTTCCGGAAGAGTGAAGAGCAGAATGACAATGAACATTGCGCTAGTGGCATCCGACACAAATCTGAAATCCAATTTTTGATTGTTTTCGKCATCTGCCACAGCACTCACTCCTCTCTGAACATATCACCCCATCCCGGTACAACTTGTGGCTCTCGGAGGATCCATAAAAGAAGAAGAAGTGCGAAACAGAACACGACTGAGATTTCGGCAAATGAGAGATTGTTGAGCTCATTGTATTTTTGTTGTAGTTTTCTGTTGACGATGATAGATCCCTTTGGAGCTCCGCGGAGATAGAGAAGGTACAGAACGCACCTGAAAACATTTTTGGAGGTCAGATGCATATGATTATGATGAAAAAATGTACCAGCAGTAGATGAGGCAGCAGAAAACCATCGGGAATGCAAAAATCAGCCAGGATAAGAAATTGACTCCAGTATCGGCACCGGGGAAGAGTCTGGAACAAGGGAAAAATTTTACAGATTTTACGGTAATTTTGATATTTTTGAAAATTTTCGGGCTGTCGTAAAATCCGTAAAACCCATAAAATTAGCAAAATGACGGTGTTTGTCACAATAATTAGTTTCTTCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTGAAGAGCAGAATGACAAT</pcr_primer_p1>
		<pcr_primer_p2>TCAACAGAAAACTACAACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAGTGAAGAGCAGAATGACAATGAACATTGCGCTAGTGGCATCCGACACAAATCTGAAATCCAATTTTTGATTGTTTTCGGCATCTGCCACAGCACTCACTCCTCTCTGAACATATCACCCCATCCCGGTACAACTTGTGGCTCTCGGAGGATCCATAAAAGAAGAAGAAGTGCGAAACAGAACACGACTGAGATTTCGGCAAATGAGAGATTGTTGAGCTCATTGTATTTTTGTTGTAGTTTTCTGTTGA</canonical_amplicon>
		<polymorphic_amplicon>GAGTGAAGAGCAGAATGACAATGAACATTGCGCTAGTGGCATCCGACACAAATCTGAAATCCAATTTTTGATTGTTTTCGKCATCTGCCACAGCACTCACTCCTCTCTGAACATATCACCCCATCCCGGTACAACTTGTGGCTCTCGGAGGATCCATAAAAGAAGAAGAAGTGCGAAACAGAACACGACTGAGATTTCGGCAAATGAGAGATTGTTGAGCTCATTGTATTTTTGTTGTAGTTTTCTGTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7390</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>312035</contig_pos>
        <strand></strand>
        <context>TATGAAAAAA[T/A]GAGAARAACA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCGCCACACATGACTTATGCCTGAATCGAAATTCAAATTATATGAAAAAA</left_flank>
        <right_flank>GAGAAAAACAAACCACTTTTCTCCTGGAAAATCATTTTCATACAGACCCC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGGAACACTCGATTCCCGGAAAACAAGTGTCAGCAGAGGATGTTCCTGAAAACATATTAATTGGAATTTTTCATCATTGGAATCTATAGTTTTGTGTATATGAAGCTTTACACTGCGAAAAAATAAGGAAAAGAAACATTTGAAACTTTTATCCTCACAGGTTATAAAAAATAATACGAATATCTGATATAGTGAACAGGATACATTAATTCTCAGAAAAAGTAGTAGAGATCTAGGTTTGATATTTCAAAATTCAAAAGATAAGGATGTTATAAATCATCTGATAAGGAAAAACAAAAGATATGATAATAATACAGTCACAATTTTAAGAGATGCTTCACTATTACACAAGTTTCCATCGCAGGTACACACTTCCAGGTTACCCTCGCCACTGGTGATTTTGGTACAATCCGATCGGATTTGTTCTTTGGCATTTGGAATACAACTTCGCCACACATGACTTATGCCTGAATCGAAATTCAAATTATATGAAAAAATGAGAAAAACAAACCACTTTTCTCCTGGAAAATCATTTTCATACAGACCCCATTTGAGCATTCATTACTTCGGACACCATCCCGAAGTGCTTGATCAACCTGGAAGAATCAAACATCATGAAAGACGATGTTTACCCTGCAAATCGGTTCTAAGAAAAACAGCATTTGTGGTTCAGGTTGCATTTTTATTTTGAAATTCTGAGATCACAGGTATGCTCTAAATTTCTAAGAATGGGAATCATATTTTTGATTTTTATTTCACAACATTTTCATCTTTTTTTTTTGAAGGATTACTGTGCAACTTGTGAACCTCGAGTCACTTCAAGACGCATTCTCTGCCAGAGCCGAAAATAGTGTTGTACAGAAAAATTCAAACTGGTATTTCAGAGTTGATATTATATGCATTGAAGGTCAGGATCCTTCTAAGTTGAAAACTGCACATTTGGTTCGGACCCACACAGTACGGTCCAAAAAATGAAAAATTTTCCCGTTGGAGATAAT</canonical>
            <polymorphic>TTCGGAACACTCGATTCCCGGAAAACAAGTGTCAGCAGAGGATGTTCCTGAAAACATATTAATTGGAATTTTTCATCATTGGAATCTATAGTTTTGTGTATATGAAGCTTTACACTGCGAAAAAATAAGGAAAAGAAACATTTGAAACTTTTATCCTCACAGGTTATAAAAAATAATACGAATATCTGATATAGTGAACAGGATACATTAATTCTCAGAAAAAGTAGTAGAGATCTAGGTTTGATATTTCAAAATTCAAAAGATAAGGATGTTATAAATCATCTGATAAGGAAAAACAAAAGATATGATAATAATACAGTCACAATTTTAAGAGATGCTTCACTATTACACAAGTTTCCATCGCAGGTACACACTTCCAGGTTACCCTCGCCACTGGTGATTTTGGTACAATCCGATCGGATTTGTTCTTTGGCATTTGGAATACAACTTCGCCACACATGACTTATGCCTGAATCGAAATTCAAATTATATGAAAAAAWGAGAAAAACAAACCACTTTTCTCCTGGAAAATCATTTTCATACAGACCCCATTTGAGCATTCATTACTTCGGACACCATCCCGAAGTGCTTGATCAACCTGGAAGAATCAAACATCATGAAAGACGATGTTTACCCTGCAAATCGGTTCTAAGAAAAACAGCATTTGTGGTTCAGGTTGCATTTTTATTTTGAAATTCTGAGATCACAGGTATGCTCTAAATTTCTAAGAATGGGAATCATATTTTTGATTTTTATTTCACAACATTTTCATCTTTTTTTTTTGAAGGATTACTGTGCAACTTGTGAACCTCGAGTCACTTCAAGACGCATTCTCTGCCAGAGCCGAAAATAGTGTTGTACAGAAAAATTCAAACTGGTATTTCAGAGTTGATATTATATGCATTGAAGGTCAGGATCCTTCTAAGTTGAAAACTGCACATTTGGTTCGGACCCACACAGTACGGTCCAAAAAATGAAAAATTTTCCCGTTGGAGATAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAGATGCTTCACTATTACACAA</pcr_primer_p1>
		<pcr_primer_p2>ATGGTGTCCGAAGTAATGAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAGATGCTTCACTATTACACAAGTTTCCATCGCAGGTACACACTTCCAGGTTACCCTCGCCACTGGTGATTTTGGTACAATCCGATCGGATTTGTTCTTTGGCATTTGGAATACAACTTCGCCACACATGACTTATGCCTGAATCGAAATTCAAATTATATGAAAAAATGAGAAAAACAAACCACTTTTCTCCTGGAAAATCATTTTCATACAGACCCCATTTGAGCATTCATTACTTCGGACACCAT</canonical_amplicon>
		<polymorphic_amplicon>AAGAGATGCTTCACTATTACACAAGTTTCCATCGCAGGTACACACTTCCAGGTTACCCTCGCCACTGGTGATTTTGGTACAATCCGATCGGATTTGTTCTTTGGCATTTGGAATACAACTTCGCCACACATGACTTATGCCTGAATCGAAATTCAAATTATATGAAAAAAWGAGAAAAACAAACCACTTTTCTCCTGGAAAATCATTTTCATACAGACCCCATTTGAGCATTCATTACTTCGGACACCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7391</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>312041</contig_pos>
        <strand></strand>
        <context>AAAAWGAGAA[A/G]AACAAACCAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACATGACTTATGCCTGAATCGAAATTCAAATTATATGAAAAAATGAGAA</left_flank>
        <right_flank>AACAAACCACTTTTCTCCTGGAAAATCATTTTCATACAGACCCCATTTGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACTCGATTCCCGGAAAACAAGTGTCAGCAGAGGATGTTCCTGAAAACATATTAATTGGAATTTTTCATCATTGGAATCTATAGTTTTGTGTATATGAAGCTTTACACTGCGAAAAAATAAGGAAAAGAAACATTTGAAACTTTTATCCTCACAGGTTATAAAAAATAATACGAATATCTGATATAGTGAACAGGATACATTAATTCTCAGAAAAAGTAGTAGAGATCTAGGTTTGATATTTCAAAATTCAAAAGATAAGGATGTTATAAATCATCTGATAAGGAAAAACAAAAGATATGATAATAATACAGTCACAATTTTAAGAGATGCTTCACTATTACACAAGTTTCCATCGCAGGTACACACTTCCAGGTTACCCTCGCCACTGGTGATTTTGGTACAATCCGATCGGATTTGTTCTTTGGCATTTGGAATACAACTTCGCCACACATGACTTATGCCTGAATCGAAATTCAAATTATATGAAAAAATGAGAAAAACAAACCACTTTTCTCCTGGAAAATCATTTTCATACAGACCCCATTTGAGCATTCATTACTTCGGACACCATCCCGAAGTGCTTGATCAACCTGGAAGAATCAAACATCATGAAAGACGATGTTTACCCTGCAAATCGGTTCTAAGAAAAACAGCATTTGTGGTTCAGGTTGCATTTTTATTTTGAAATTCTGAGATCACAGGTATGCTCTAAATTTCTAAGAATGGGAATCATATTTTTGATTTTTATTTCACAACATTTTCATCTTTTTTTTTTGAAGGATTACTGTGCAACTTGTGAACCTCGAGTCACTTCAAGACGCATTCTCTGCCAGAGCCGAAAATAGTGTTGTACAGAAAAATTCAAACTGGTATTTCAGAGTTGATATTATATGCATTGAAGGTCAGGATCCTTCTAAGTTGAAAACTGCACATTTGGTTCGGACCCACACAGTACGGTCCAAAAAATGAAAAATTTTCCCGTTGGAGATAATGATTAG</canonical>
            <polymorphic>ACACTCGATTCCCGGAAAACAAGTGTCAGCAGAGGATGTTCCTGAAAACATATTAATTGGAATTTTTCATCATTGGAATCTATAGTTTTGTGTATATGAAGCTTTACACTGCGAAAAAATAAGGAAAAGAAACATTTGAAACTTTTATCCTCACAGGTTATAAAAAATAATACGAATATCTGATATAGTGAACAGGATACATTAATTCTCAGAAAAAGTAGTAGAGATCTAGGTTTGATATTTCAAAATTCAAAAGATAAGGATGTTATAAATCATCTGATAAGGAAAAACAAAAGATATGATAATAATACAGTCACAATTTTAAGAGATGCTTCACTATTACACAAGTTTCCATCGCAGGTACACACTTCCAGGTTACCCTCGCCACTGGTGATTTTGGTACAATCCGATCGGATTTGTTCTTTGGCATTTGGAATACAACTTCGCCACACATGACTTATGCCTGAATCGAAATTCAAATTATATGAAAAAATGAGAARAACAAACCACTTTTCTCCTGGAAAATCATTTTCATACAGACCCCATTTGAGCATTCATTACTTCGGACACCATCCCGAAGTGCTTGATCAACCTGGAAGAATCAAACATCATGAAAGACGATGTTTACCCTGCAAATCGGTTCTAAGAAAAACAGCATTTGTGGTTCAGGTTGCATTTTTATTTTGAAATTCTGAGATCACAGGTATGCTCTAAATTTCTAAGAATGGGAATCATATTTTTGATTTTTATTTCACAACATTTTCATCTTTTTTTTTTGAAGGATTACTGTGCAACTTGTGAACCTCGAGTCACTTCAAGACGCATTCTCTGCCAGAGCCGAAAATAGTGTTGTACAGAAAAATTCAAACTGGTATTTCAGAGTTGATATTATATGCATTGAAGGTCAGGATCCTTCTAAGTTGAAAACTGCACATTTGGTTCGGACCCACACAGTACGGTCCAAAAAATGAAAAATTTTCCCGTTGGAGATAATGATTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAGATGCTTCACTATTACACAA</pcr_primer_p1>
		<pcr_primer_p2>ATGGTGTCCGAAGTAATGAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAGATGCTTCACTATTACACAAGTTTCCATCGCAGGTACACACTTCCAGGTTACCCTCGCCACTGGTGATTTTGGTACAATCCGATCGGATTTGTTCTTTGGCATTTGGAATACAACTTCGCCACACATGACTTATGCCTGAATCGAAATTCAAATTATATGAAAAAATGAGAAAAACAAACCACTTTTCTCCTGGAAAATCATTTTCATACAGACCCCATTTGAGCATTCATTACTTCGGACACCAT</canonical_amplicon>
		<polymorphic_amplicon>AAGAGATGCTTCACTATTACACAAGTTTCCATCGCAGGTACACACTTCCAGGTTACCCTCGCCACTGGTGATTTTGGTACAATCCGATCGGATTTGTTCTTTGGCATTTGGAATACAACTTCGCCACACATGACTTATGCCTGAATCGAAATTCAAATTATATGAAAAAATGAGAARAACAAACCACTTTTCTCCTGGAAAATCATTTTCATACAGACCCCATTTGAGCATTCATTACTTCGGACACCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7392</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>312071</contig_pos>
        <strand></strand>
        <context>GGAAAATCAT[T/C]TTCATACAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTATATGAAAAAATGAGAAAAACAAACCACTTTTCTCCTGGAAAATCAT</left_flank>
        <right_flank>TTCATACAGACCCCATTTGAGCATTCATTACTTCGGACACCATCCCGAAG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGGATGTTCCTGAAAACATATTAATTGGAATTTTTCATCATTGGAATCTATAGTTTTGTGTATATGAAGCTTTACACTGCGAAAAAATAAGGAAAAGAAACATTTGAAACTTTTATCCTCACAGGTTATAAAAAATAATACGAATATCTGATATAGTGAACAGGATACATTAATTCTCAGAAAAAGTAGTAGAGATCTAGGTTTGATATTTCAAAATTCAAAAGATAAGGATGTTATAAATCATCTGATAAGGAAAAACAAAAGATATGATAATAATACAGTCACAATTTTAAGAGATGCTTCACTATTACACAAGTTTCCATCGCAGGTACACACTTCCAGGTTACCCTCGCCACTGGTGATTTTGGTACAATCCGATCGGATTTGTTCTTTGGCATTTGGAATACAACTTCGCCACACATGACTTATGCCTGAATCGAAATTCAAATTATATGAAAAAATGAGAAAAACAAACCACTTTTCTCCTGGAAAATCATTTTCATACAGACCCCATTTGAGCATTCATTACTTCGGACACCATCCCGAAGTGCTTGATCAACCTGGAAGAATCAAACATCATGAAAGACGATGTTTACCCTGCAAATCGGTTCTAAGAAAAACAGCATTTGTGGTTCAGGTTGCATTTTTATTTTGAAATTCTGAGATCACAGGTATGCTCTAAATTTCTAAGAATGGGAATCATATTTTTGATTTTTATTTCACAACATTTTCATCTTTTTTTTTTGAAGGATTACTGTGCAACTTGTGAACCTCGAGTCACTTCAAGACGCATTCTCTGCCAGAGCCGAAAATAGTGTTGTACAGAAAAATTCAAACTGGTATTTCAGAGTTGATATTATATGCATTGAAGGTCAGGATCCTTCTAAGTTGAAAACTGCACATTTGGTTCGGACCCACACAGTACGGTCCAAAAAATGAAAAATTTTCCCGTTGGAGATAATGATTAGATTTGATTTGGTTTAGTTCATTATTGCAAT</canonical>
            <polymorphic>AGAGGATGTTCCTGAAAACATATTAATTGGAATTTTTCATCATTGGAATCTATAGTTTTGTGTATATGAAGCTTTACACTGCGAAAAAATAAGGAAAAGAAACATTTGAAACTTTTATCCTCACAGGTTATAAAAAATAATACGAATATCTGATATAGTGAACAGGATACATTAATTCTCAGAAAAAGTAGTAGAGATCTAGGTTTGATATTTCAAAATTCAAAAGATAAGGATGTTATAAATCATCTGATAAGGAAAAACAAAAGATATGATAATAATACAGTCACAATTTTAAGAGATGCTTCACTATTACACAAGTTTCCATCGCAGGTACACACTTCCAGGTTACCCTCGCCACTGGTGATTTTGGTACAATCCGATCGGATTTGTTCTTTGGCATTTGGAATACAACTTCGCCACACATGACTTATGCCTGAATCGAAATTCAAATTATATGAAAAAATGAGAAAAACAAACCACTTTTCTCCTGGAAAATCATYTTCATACAGACCCCATTTGAGCATTCATTACTTCGGACACCATCCCGAAGTGCTTGATCAACCTGGAAGAATCAAACATCATGAAAGACGATGTTTACCCTGCAAATCGGTTCTAAGAAAAACAGCATTTGTGGTTCAGGTTGCATTTTTATTTTGAAATTCTGAGATCACAGGTATGCTCTAAATTTCTAAGAATGGGAATCATATTTTTGATTTTTATTTCACAACATTTTCATCTTTTTTTTTTGAAGGATTACTGTGCAACTTGTGAACCTCGAGTCACTTCAAGACGCATTCTCTGCCAGAGCCGAAAATAGTGTTGTACAGAAAAATTCAAACTGGTATTTCAGAGTTGATATTATATGCATTGAAGGTCAGGATCCTTCTAAGTTGAAAACTGCACATTTGGTTCGGACCCACACAGTACGGTCCAAAAAATGAAAAATTTTCCCGTTGGAGATAATGATTAGATTTGATTTGGTTTAGTTCATTATTGCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGTACACACTTCCAGGTTAC</pcr_primer_p1>
		<pcr_primer_p2>GTTTGATTCTTCCAGGTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGGTACACACTTCCAGGTTACCCTCGCCACTGGTGATTTTGGTACAATCCGATCGGATTTGTTCTTTGGCATTTGGAATACAACTTCGCCACACATGACTTATGCCTGAATCGAAATTCAAATTATATGAAAAAATGAGAAAAACAAACCACTTTTCTCCTGGAAAATCATTTTCATACAGACCCCATTTGAGCATTCATTACTTCGGACACCATCCCGAAGTGCTTGATCAACCTGGAAGAATCAAAC</canonical_amplicon>
		<polymorphic_amplicon>CAGGTACACACTTCCAGGTTACCCTCGCCACTGGTGATTTTGGTACAATCCGATCGGATTTGTTCTTTGGCATTTGGAATACAACTTCGCCACACATGACTTATGCCTGAATCGAAATTCAAATTATATGAAAAAATGAGAAAAACAAACCACTTTTCTCCTGGAAAATCATYTTCATACAGACCCCATTTGAGCATTCATTACTTCGGACACCATCCCGAAGTGCTTGATCAACCTGGAAGAATCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7393</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>312196</contig_pos>
        <strand></strand>
        <context>AAGAAAAACA[G/A]CATTTGTGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AACATCATGAAAGACGATGTTTACCCTGCAAATCGGTTCTAAGAAAAACA</left_flank>
        <right_flank>CATTTGTGGTTCAGGTTGCATTTTTATTTTGAAATTCTGAGATCACAGGT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTATAAAAAATAATACGAATATCTGATATAGTGAACAGGATACATTAATTCTCAGAAAAAGTAGTAGAGATCTAGGTTTGATATTTCAAAATTCAAAAGATAAGGATGTTATAAATCATCTGATAAGGAAAAACAAAAGATATGATAATAATACAGTCACAATTTTAAGAGATGCTTCACTATTACACAAGTTTCCATCGCAGGTACACACTTCCAGGTTACCCTCGCCACTGGTGATTTTGGTACAATCCGATCGGATTTGTTCTTTGGCATTTGGAATACAACTTCGCCACACATGACTTATGCCTGAATCGAAATTCAAATTATATGAAAAAATGAGAAAAACAAACCACTTTTCTCCTGGAAAATCATTTTCATACAGACCCCATTTGAGCATTCATTACTTCGGACACCATCCCGAAGTGCTTGATCAACCTGGAAGAATCAAACATCATGAAAGACGATGTTTACCCTGCAAATCGGTTCTAAGAAAAACAGCATTTGTGGTTCAGGTTGCATTTTTATTTTGAAATTCTGAGATCACAGGTATGCTCTAAATTTCTAAGAATGGGAATCATATTTTTGATTTTTATTTCACAACATTTTCATCTTTTTTTTTTGAAGGATTACTGTGCAACTTGTGAACCTCGAGTCACTTCAAGACGCATTCTCTGCCAGAGCCGAAAATAGTGTTGTACAGAAAAATTCAAACTGGTATTTCAGAGTTGATATTATATGCATTGAAGGTCAGGATCCTTCTAAGTTGAAAACTGCACATTTGGTTCGGACCCACACAGTACGGTCCAAAAAATGAAAAATTTTCCCGTTGGAGATAATGATTAGATTTGATTTGGTTTAGTTCATTATTGCAATTTTGAGCTTTTTTGTGTTGCGACCAACATTTTGGCTCTTTTCCTTTCAGCTGAAAATTCTGATTTTTGTTTCGATTTTGAAAAAATTACAGAAAATCTGCCGTCGCAAAAAACGTTAACATTATT</canonical>
            <polymorphic>GGTTATAAAAAATAATACGAATATCTGATATAGTGAACAGGATACATTAATTCTCAGAAAAAGTAGTAGAGATCTAGGTTTGATATTTCAAAATTCAAAAGATAAGGATGTTATAAATCATCTGATAAGGAAAAACAAAAGATATGATAATAATACAGTCACAATTTTAAGAGATGCTTCACTATTACACAAGTTTCCATCGCAGGTACACACTTCCAGGTTACCCTCGCCACTGGTGATTTTGGTACAATCCGATCGGATTTGTTCTTTGGCATTTGGAATACAACTTCGCCACACATGACTTATGCCTGAATCGAAATTCAAATTATATGAAAAAATGAGAAAAACAAACCACTTTTCTCCTGGAAAATCATTTTCATACAGACCCCATTTGAGCATTCATTACTTCGGACACCATCCCGAAGTGCTTGATCAACCTGGAAGAATCAAACATCATGAAAGACGATGTTTACCCTGCAAATCGGTTCTAAGAAAAACARCATTTGTGGTTCAGGTTGCATTTTTATTTTGAAATTCTGAGATCACAGGTATGCTCTAAATTTCTAAGAATGGGAATCATATTTTTGATTTTTATTTCACAACATTTTCATCTTTTTTTTTTGAAGGATTACTGTGCAACTTGTGAACCTCGAGTCACTTCAAGACGCATTCTCTGCCAGAGCCGAAAATAGTGTTGTACAGAAAAATTCAAACTGGTATTTCAGAGTTGATATTATATGCATTGAAGGTCAGGATCCTTCTAAGTTGAAAACTGCACATTTGGTTCGGACCCACACAGTACGGTCCAAAAAATGAAAAATTTTCCCGTTGGAGATAATGATTAGATTTGATTTGGTTTAGTTCATTATTGCAATTTTGAGCTTTTTTGTGTTGCGACCAACATTTTGGCTCTTTTCCTTTCAGCTGAAAATTCTGATTTTTGTTTCGATTTTGAAAAAATTACAGAAAATCTGCCGTCGCAAAAAACGTTAACATTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATACAGACCCCATTTGAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGATGAAAATGTTGTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TCATACAGACCCCATTTGAGCATTCATTACTTCGGACACCATCCCGAAGTGCTTGATCAACCTGGAAGAATCAAACATCATGAAAGACGATGTTTACCCTGCAAATCGGTTCTAAGAAAAACAGCATTTGTGGTTCAGGTTGCATTTTTATTTTGAAATTCTGAGATCACAGGTATGCTCTAAATTTCTAAGAATGGGAATCATATTTTTGATTTTTATTTCACAACATTTTCATCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>TCATACAGACCCCATTTGAGCATTCATTACTTCGGACACCATCCCGAAGTGCTTGATCAACCTGGAAGAATCAAACATCATGAAAGACGATGTTTACCCTGCAAATCGGTTCTAAGAAAAACARCATTTGTGGTTCAGGTTGCATTTTTATTTTGAAATTCTGAGATCACAGGTATGCTCTAAATTTCTAAGAATGGGAATCATATTTTTGATTTTTATTTCACAACATTTTCATCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7394</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>312226</contig_pos>
        <strand></strand>
        <context>ATTTTTATTT[T/A]GAAATTCTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATCGGTTCTAAGAAAAACAGCATTTGTGGTTCAGGTTGCATTTTTATTT</left_flank>
        <right_flank>GAAATTCTGAGATCACAGGTATGCTCTAAATTTCTAAGAATGGGAATCAT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTGAACAGGATACATTAATTCTCAGAAAAAGTAGTAGAGATCTAGGTTTGATATTTCAAAATTCAAAAGATAAGGATGTTATAAATCATCTGATAAGGAAAAACAAAAGATATGATAATAATACAGTCACAATTTTAAGAGATGCTTCACTATTACACAAGTTTCCATCGCAGGTACACACTTCCAGGTTACCCTCGCCACTGGTGATTTTGGTACAATCCGATCGGATTTGTTCTTTGGCATTTGGAATACAACTTCGCCACACATGACTTATGCCTGAATCGAAATTCAAATTATATGAAAAAATGAGAAAAACAAACCACTTTTCTCCTGGAAAATCATTTTCATACAGACCCCATTTGAGCATTCATTACTTCGGACACCATCCCGAAGTGCTTGATCAACCTGGAAGAATCAAACATCATGAAAGACGATGTTTACCCTGCAAATCGGTTCTAAGAAAAACAGCATTTGTGGTTCAGGTTGCATTTTTATTTTGAAATTCTGAGATCACAGGTATGCTCTAAATTTCTAAGAATGGGAATCATATTTTTGATTTTTATTTCACAACATTTTCATCTTTTTTTTTTGAAGGATTACTGTGCAACTTGTGAACCTCGAGTCACTTCAAGACGCATTCTCTGCCAGAGCCGAAAATAGTGTTGTACAGAAAAATTCAAACTGGTATTTCAGAGTTGATATTATATGCATTGAAGGTCAGGATCCTTCTAAGTTGAAAACTGCACATTTGGTTCGGACCCACACAGTACGGTCCAAAAAATGAAAAATTTTCCCGTTGGAGATAATGATTAGATTTGATTTGGTTTAGTTCATTATTGCAATTTTGAGCTTTTTTGTGTTGCGACCAACATTTTGGCTCTTTTCCTTTCAGCTGAAAATTCTGATTTTTGTTTCGATTTTGAAAAAATTACAGAAAATCTGCCGTCGCAAAAAACGTTAACATTATTTTCAAAAATAACATTAGATTCAAATCAGGC</canonical>
            <polymorphic>TAGTGAACAGGATACATTAATTCTCAGAAAAAGTAGTAGAGATCTAGGTTTGATATTTCAAAATTCAAAAGATAAGGATGTTATAAATCATCTGATAAGGAAAAACAAAAGATATGATAATAATACAGTCACAATTTTAAGAGATGCTTCACTATTACACAAGTTTCCATCGCAGGTACACACTTCCAGGTTACCCTCGCCACTGGTGATTTTGGTACAATCCGATCGGATTTGTTCTTTGGCATTTGGAATACAACTTCGCCACACATGACTTATGCCTGAATCGAAATTCAAATTATATGAAAAAATGAGAAAAACAAACCACTTTTCTCCTGGAAAATCATTTTCATACAGACCCCATTTGAGCATTCATTACTTCGGACACCATCCCGAAGTGCTTGATCAACCTGGAAGAATCAAACATCATGAAAGACGATGTTTACCCTGCAAATCGGTTCTAAGAAAAACAGCATTTGTGGTTCAGGTTGCATTTTTATTTWGAAATTCTGAGATCACAGGTATGCTCTAAATTTCTAAGAATGGGAATCATATTTTTGATTTTTATTTCACAACATTTTCATCTTTTTTTTTTGAAGGATTACTGTGCAACTTGTGAACCTCGAGTCACTTCAAGACGCATTCTCTGCCAGAGCCGAAAATAGTGTTGTACAGAAAAATTCAAACTGGTATTTCAGAGTTGATATTATATGCATTGAAGGTCAGGATCCTTCTAAGTTGAAAACTGCACATTTGGTTCGGACCCACACAGTACGGTCCAAAAAATGAAAAATTTTCCCGTTGGAGATAATGATTAGATTTGATTTGGTTTAGTTCATTATTGCAATTTTGAGCTTTTTTGTGTTGCGACCAACATTTTGGCTCTTTTCCTTTCAGCTGAAAATTCTGATTTTTGTTTCGATTTTGAAAAAATTACAGAAAATCTGCCGTCGCAAAAAACGTTAACATTATTTTCAAAAATAACATTAGATTCAAATCAGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATACAGACCCCATTTGAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGATGAAAATGTTGTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TCATACAGACCCCATTTGAGCATTCATTACTTCGGACACCATCCCGAAGTGCTTGATCAACCTGGAAGAATCAAACATCATGAAAGACGATGTTTACCCTGCAAATCGGTTCTAAGAAAAACAGCATTTGTGGTTCAGGTTGCATTTTTATTTTGAAATTCTGAGATCACAGGTATGCTCTAAATTTCTAAGAATGGGAATCATATTTTTGATTTTTATTTCACAACATTTTCATCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>TCATACAGACCCCATTTGAGCATTCATTACTTCGGACACCATCCCGAAGTGCTTGATCAACCTGGAAGAATCAAACATCATGAAAGACGATGTTTACCCTGCAAATCGGTTCTAAGAAAAACAGCATTTGTGGTTCAGGTTGCATTTTTATTTWGAAATTCTGAGATCACAGGTATGCTCTAAATTTCTAAGAATGGGAATCATATTTTTGATTTTTATTTCACAACATTTTCATCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7396</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>312328</contig_pos>
        <strand></strand>
        <context>TGAAGGATTA[C/A]TGTGCAACTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTTTGATTTTTATTTCACAACATTTTCATCTTTTTTTTTTGAAGGATTA</left_flank>
        <right_flank>TGTGCAACTTGTGAACCTCGAGTCACTTCAAGACGCATTCTCTGCCAGAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACAAAAGATATGATAATAATACAGTCACAATTTTAAGAGATGCTTCACTATTACACAAGTTTCCATCGCAGGTACACACTTCCAGGTTACCCTCGCCACTGGTGATTTTGGTACAATCCGATCGGATTTGTTCTTTGGCATTTGGAATACAACTTCGCCACACATGACTTATGCCTGAATCGAAATTCAAATTATATGAAAAAATGAGAAAAACAAACCACTTTTCTCCTGGAAAATCATTTTCATACAGACCCCATTTGAGCATTCATTACTTCGGACACCATCCCGAAGTGCTTGATCAACCTGGAAGAATCAAACATCATGAAAGACGATGTTTACCCTGCAAATCGGTTCTAAGAAAAACAGCATTTGTGGTTCAGGTTGCATTTTTATTTTGAAATTCTGAGATCACAGGTATGCTCTAAATTTCTAAGAATGGGAATCATATTTTTGATTTTTATTTCACAACATTTTCATCTTTTTTTTTTGAAGGATTACTGTGCAACTTGTGAACCTCGAGTCACTTCAAGACGCATTCTCTGCCAGAGCCGAAAATAGTGTTGTACAGAAAAATTCAAACTGGTATTTCAGAGTTGATATTATATGCATTGAAGGTCAGGATCCTTCTAAGTTGAAAACTGCACATTTGGTTCGGACCCACACAGTACGGTCCAAAAAATGAAAAATTTTCCCGTTGGAGATAATGATTAGATTTGATTTGGTTTAGTTCATTATTGCAATTTTGAGCTTTTTTGTGTTGCGACCAACATTTTGGCTCTTTTCCTTTCAGCTGAAAATTCTGATTTTTGTTTCGATTTTGAAAAAATTACAGAAAATCTGCCGTCGCAAAAAACGTTAACATTATTTTCAAAAATAACATTAGATTCAAATCAGGCGTACAAAATAACACTAGAAAATGTTTATTTGAAATGGAATATTCTGTGTCTTATGCCAGTTTTAGGCCAACAAGTGAGGAAAAATGAGGTTTCACCATGTGG</canonical>
            <polymorphic>AAACAAAAGATATGATAATAATACAGTCACAATTTTAAGAGATGCTTCACTATTACACAAGTTTCCATCGCAGGTACACACTTCCAGGTTACCCTCGCCACTGGTGATTTTGGTACAATCCGATCGGATTTGTTCTTTGGCATTTGGAATACAACTTCGCCACACATGACTTATGCCTGAATCGAAATTCAAATTATATGAAAAAATGAGAAAAACAAACCACTTTTCTCCTGGAAAATCATTTTCATACAGACCCCATTTGAGCATTCATTACTTCGGACACCATCCCGAAGTGCTTGATCAACCTGGAAGAATCAAACATCATGAAAGACGATGTTTACCCTGCAAATCGGTTCTAAGAAAAACAGCATTTGTGGTTCAGGTTGCATTTTTATTTTGAAATTCTGAGATCACAGGTATGCTCTAAATTTCTAAGAATGGGAATCATATTTTTGATTTTTATTTCACAACATTTTCATCTTTTTTTTTTGAAGGATTAMTGTGCAACTTGTGAACCTCGAGTCACTTCAAGACGCATTCTCTGCCAGAGCCGAAAATAGTGTTGTACAGAAAAATTCAAACTGGTATTTCAGAGTTGATATTATATGCATTGAAGGTCAGGATCCTTCTAAGTTGAAAACTGCACATTTGGTTCGGACCCACACAGTACGGTCCAAAAAATGAAAAATTTTCCCGTTGGAGATAATGATTAGATTTGATTTGGTTTAGTTCATTATTGCAATTTTGAGCTTTTTTGTGTTGCGACCAACATTTTGGCTCTTTTCCTTTCAGCTGAAAATTCTGATTTTTGTTTCGATTTTGAAAAAATTACAGAAAATCTGCCGTCGCAAAAAACGTTAACATTATTTTCAAAAATAACATTAGATTCAAATCAGGCGTACAAAATAACACTAGAAAATGTTTATTTGAAATGGAATATTCTGTGTCTTATGCCAGTTTTAGGCCAACAAGTGAGGAAAAATGAGGTTTCACCATGTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>476 329 165 25 5</canonical_bands>
                <polymorphic_bands>641 329 25 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGAATCATATTTTTGATTTTTA</pcr_primer_p1>
		<pcr_primer_p2>TGTCTGTTGACCACTTTTATACAT</pcr_primer_p2>
		<pcr_amplicon_size>630</pcr_amplicon_size>
		<canonical_amplicon>GGGAATCATATTTTTGATTTTTATTTCACAACATTTTCATCTTTTTTTTTTGAAGGATTACTGTGCAACTTGTGAACCTCGAGT</canonical_amplicon>
		<polymorphic_amplicon>GGGAATCATATTTTTGATTTTTATTTCACAACATTTTCATCTTTTTTTTTTGAAGGATTAMTGTGCAACTTGTGAACCTCGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7397</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>316712</contig_pos>
        <strand>+</strand>
        <context>GAGCCCACAG[A/G]TGGTAACAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAACATTGTATGTTTCTTGCGCAACATCAATTGAAAAATGAGCCCACAG</left_flank>
        <right_flank>TGGTAACAACGGATACGGAGAATTGAGGTGTCAGTTTTGCGGATTAGGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAAAGTTTTGAAATTTCAGTAAAGTTTCAAACTTCTCGCTTGACAGAGATTTCGTTAACATTTTTGATTGACTTCAAAAAAACGGGCTGAACAGAGAAAGTTCTGAAAAAAGCATGATCTGGCCCGGCCCTTCGCAAGTATGATTGAAACTCTGAAACGGGAATTTTCAAAATTTTTAACTCGATAAAAAAGGAAATGTCTTTTTAGTAAATGGTTTGCCAGTAACCGTTGTTTCTCATGAAATCTTTATTGAATCTATCTTGCTGAAAAGGTTTTTCAAATTTAAAATTTTCTATGTTCTTTTCAGTCATCTTCGACTTCACCAAAATCTCTGTCCAATGTTTCCCCATTGTCGAATACCTTCTGGACATCACATTTTCCACAAGATTATCTTTTTTATTGACTTCTCATTGATCCTCTTCTATATTATTGATAGTTTCCGGATAATAACATTGTATGTTTCTTGCGCAACATCAATTGAAAAATGAGCCCACAGATGGTAACAACGGATACGGAGAATTGAGGTGTCAGTTTTGCGGATTAGGCGACGTTTGTTTTATTTACGTTTGTTATTGCATGTTATGAGATTAACACATGAGATGCGTGAGGTAAAATGCGGTGGTCTTCCCCGTCAAGTATCTTGAATGAATAAAATATTCTAGTTTTAGCAGTAAAACAGAAGAAAATGTTTTTTGAGACTGAAAATTTCTGGCAGATGATTCCAGACTAACCTGCGAATGTAAATCTGCAAGTTTTTGAATAAAATGTTGGAAAATCTTTTGTAAAATTGTAGAGTGTTCGGGATATATTTTTCACTAAAAATATAAGAAAATTTTAGATTTCAAACATAACAATTTTCAGATAAATACTTTCATTACAGGTGGCCGTTTTATTTTTCCAGCCCATCTCGAAGCGCCTTCCATTAGAGGGATCGTTTAATACAGTTTTTATGGGAACTGAAAGTTCAGACTTCTGAATTGGACATGAAAATCTATTA</canonical>
            <polymorphic>TGAAAAAGTTTTGAAATTTCAGTAAAGTTTCAAACTTCTCGCTTGACAGAGATTTCGTTAACATTTTTGATTGACTTCAAAAAAACGGGCTGAACAGAGAAAGTTCTGAAAAAAGCATGATCTGGCCCGGCCCTTCGCAAGTATGATTGAAACTCTGAAACGGGAATTTTCAAAATTTTTAACTCGATAAAAAAGGAAATGTCTTTTTAGTAAATGGTTTGCCAGTAACCGTTGTTTCTCATGAAATCTTTATTGAATCTATCTTGCTGAAAAGGTTTTTCAAATTTAAAATTTTCTATGTTCTTTTCAGTCATCTTCGACTTCACCAAAATCTCTGTCCAATGTTTCCCCATTGTCGAATACCTTCTGGACATCACATTTTCCACAAGATTATCTTTTTTATTGACTTCTCATTGATCCTCTTCTATATTATTGATAGTTTCCGGATAATAACATTGTATGTTTCTTGCGCAACATCAATTGAAAAATGAGCCCACAGRTGGTAACAACGGATACGGAGAATTGAGGTGTCAGTTTTGCGGATTAGGCGACGTTTGTTTTATTTACGTTTGTTATTGCATGTTATGAGATTAACACATGAGATGCGTGAGGTAAAATGCGGTGGTCTTCCCCGTCAAGTATCTTGAATGAATAAAATATTCTAGTTTTAGCAGTAAAACAGAAGAAAATGTTTTTTGAGACTGAAAATTTCTGGCAGATGATTCCAGACTAACCTGCGAATGTAAATCTGCAAGTTTTTGAATAAAATGTTGGAAAATCTTTTGTAAAATTGTAGAGTGTTCGGGATATATTTTTCACTAAAAATATAAGAAAATTTTAGATTTCAAACATAACAATTTTCAGATAAATACTTTCATTACAGGTGGCCGTTTTATTTTTCCAGCCCATCTCGAAGCGCCTTCCATTAGAGGGATCGTTTAATACAGTTTTTATGGGAACTGAAAGTTCAGACTTCTGAATTGGACATGAAAATCTATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCGGATAATAACATTGTATG</pcr_primer_p1>
		<pcr_primer_p2>CATTTTCTTCTGTTTTACTGCTAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTCCGGATAATAACATTGTATGTTTCTTGCGCAACATCAATTGAAAAATGAGCCCACAGATGGTAACAACGGATACGGAGAATTGAGGTGTCAGTTTTGCGGATTAGGCGACGTTTGTTTTATTTACGTTTGTTATTGCATGTTATGAGATTAACACATGAGATGCGTGAGGTAAAATGCGGTGGTCTTCCCCGTCAAGTATCTTGAATGAATAAAATATTCTAGTTTTAGCAGTAAAACAGAAGAAAATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCCGGATAATAACATTGTATGTTTCTTGCGCAACATCAATTGAAAAATGAGCCCACAGRTGGTAACAACGGATACGGAGAATTGAGGTGTCAGTTTTGCGGATTAGGCGACGTTTGTTTTATTTACGTTTGTTATTGCATGTTATGAGATTAACACATGAGATGCGTGAGGTAAAATGCGGTGGTCTTCCCCGTCAAGTATCTTGAATGAATAAAATATTCTAGTTTTAGCAGTAAAACAGAAGAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7398</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>316637</contig_pos>
        <strand>+</strand>
        <context>TGATCCTCTT[C/G]TATATTATTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CACATTTTCCACAAGATTATCTTTTTTATTGACTTCTCATTGATCCTCTT</left_flank>
        <right_flank>TATATTATTGATAGTTTCCGGATAATAACATTGTATGTTTCTTGCGCAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATAAAACAATAGATTGTACAAAACATACTAAAAAAACCACGGCCAGGCCTAGTCGGCCCGAGTTTTTTACATTTGAAAAAGTTTTGAAATTTCAGTAAAGTTTCAAACTTCTCGCTTGACAGAGATTTCGTTAACATTTTTGATTGACTTCAAAAAAACGGGCTGAACAGAGAAAGTTCTGAAAAAAGCATGATCTGGCCCGGCCCTTCGCAAGTATGATTGAAACTCTGAAACGGGAATTTTCAAAATTTTTAACTCGATAAAAAAGGAAATGTCTTTTTAGTAAATGGTTTGCCAGTAACCGTTGTTTCTCATGAAATCTTTATTGAATCTATCTTGCTGAAAAGGTTTTTCAAATTTAAAATTTTCTATGTTCTTTTCAGTCATCTTCGACTTCACCAAAATCTCTGTCCAATGTTTCCCCATTGTCGAATACCTTCTGGACATCACATTTTCCACAAGATTATCTTTTTTATTGACTTCTCATTGATCCTCTTCTATATTATTGATAGTTTCCGGATAATAACATTGTATGTTTCTTGCGCAACATCAATTGAAAAATGAGCCCACAGATGGTAACAACGGATACGGAGAATTGAGGTGTCAGTTTTGCGGATTAGGCGACGTTTGTTTTATTTACGTTTGTTATTGCATGTTATGAGATTAACACATGAGATGCGTGAGGTAAAATGCGGTGGTCTTCCCCGTCAAGTATCTTGAATGAATAAAATATTCTAGTTTTAGCAGTAAAACAGAAGAAAATGTTTTTTGAGACTGAAAATTTCTGGCAGATGATTCCAGACTAACCTGCGAATGTAAATCTGCAAGTTTTTGAATAAAATGTTGGAAAATCTTTTGTAAAATTGTAGAGTGTTCGGGATATATTTTTCACTAAAAATATAAGAAAATTTTAGATTTCAAACATAACAATTTTCAGATAAATACTTTCATTACAGGTGGCCGTTTTATTTTTCCAGCCCATCTCGAAGCGCCTTCCA</canonical>
            <polymorphic>CAATAAAACAATAGATTGTACAAAACATACTAAAAAAACCACGGCCAGGCCTAGTCGGCCCGAGTTTTTTACATTTGAAAAAGTTTTGAAATTTCAGTAAAGTTTCAAACTTCTCGCTTGACAGAGATTTCGTTAACATTTTTGATTGACTTCAAAAAAACGGGCTGAACAGAGAAAGTTCTGAAAAAAGCATGATCTGGCCCGGCCCTTCGCAAGTATGATTGAAACTCTGAAACGGGAATTTTCAAAATTTTTAACTCGATAAAAAAGGAAATGTCTTTTTAGTAAATGGTTTGCCAGTAACCGTTGTTTCTCATGAAATCTTTATTGAATCTATCTTGCTGAAAAGGTTTTTCAAATTTAAAATTTTCTATGTTCTTTTCAGTCATCTTCGACTTCACCAAAATCTCTGTCCAATGTTTCCCCATTGTCGAATACCTTCTGGACATCACATTTTCCACAAGATTATCTTTTTTATTGACTTCTCATTGATCCTCTTSTATATTATTGATAGTTTCCGGATAATAACATTGTATGTTTCTTGCGCAACATCAATTGAAAAATGAGCCCACAGATGGTAACAACGGATACGGAGAATTGAGGTGTCAGTTTTGCGGATTAGGCGACGTTTGTTTTATTTACGTTTGTTATTGCATGTTATGAGATTAACACATGAGATGCGTGAGGTAAAATGCGGTGGTCTTCCCCGTCAAGTATCTTGAATGAATAAAATATTCTAGTTTTAGCAGTAAAACAGAAGAAAATGTTTTTTGAGACTGAAAATTTCTGGCAGATGATTCCAGACTAACCTGCGAATGTAAATCTGCAAGTTTTTGAATAAAATGTTGGAAAATCTTTTGTAAAATTGTAGAGTGTTCGGGATATATTTTTCACTAAAAATATAAGAAAATTTTAGATTTCAAACATAACAATTTTCAGATAAATACTTTCATTACAGGTGGCCGTTTTATTTTTCCAGCCCATCTCGAAGCGCCTTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCAAAATCTCTGTCCAATGT</pcr_primer_p1>
		<pcr_primer_p2>CAAACGTAAATAAAACAAACGTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACCAAAATCTCTGTCCAATGTTTCCCCATTGTCGAATACCTTCTGGACATCACATTTTCCACAAGATTATCTTTTTTATTGACTTCTCATTGATCCTCTTCTATATTATTGATAGTTTCCGGATAATAACATTGTATGTTTCTTGCGCAACATCAATTGAAAAATGAGCCCACAGATGGTAACAACGGATACGGAGAATTGAGGTGTCAGTTTTGCGGATTAGGCGACGTTTGTTTTATTTACGTTTG</canonical_amplicon>
		<polymorphic_amplicon>ACCAAAATCTCTGTCCAATGTTTCCCCATTGTCGAATACCTTCTGGACATCACATTTTCCACAAGATTATCTTTTTTATTGACTTCTCATTGATCCTCTTSTATATTATTGATAGTTTCCGGATAATAACATTGTATGTTTCTTGCGCAACATCAATTGAAAAATGAGCCCACAGATGGTAACAACGGATACGGAGAATTGAGGTGTCAGTTTTGCGGATTAGGCGACGTTTGTTTTATTTACGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7399</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>316586</contig_pos>
        <strand>+</strand>
        <context>CTTCTGGACA[A/T]CACATTTTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CACCAAAATCTCTGTCCAATGTTTCCCCATTGTCGAATACCTTCTGGACA</left_flank>
        <right_flank>CACATTTTCCACAAGATTATCTTTTTTATTGACTTCTCATTGATCCTCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACATAGTCATACTGAAAAAAAAACTGTGACTGGAGTTCTATCTTTTTATTCAATAAAACAATAGATTGTACAAAACATACTAAAAAAACCACGGCCAGGCCTAGTCGGCCCGAGTTTTTTACATTTGAAAAAGTTTTGAAATTTCAGTAAAGTTTCAAACTTCTCGCTTGACAGAGATTTCGTTAACATTTTTGATTGACTTCAAAAAAACGGGCTGAACAGAGAAAGTTCTGAAAAAAGCATGATCTGGCCCGGCCCTTCGCAAGTATGATTGAAACTCTGAAACGGGAATTTTCAAAATTTTTAACTCGATAAAAAAGGAAATGTCTTTTTAGTAAATGGTTTGCCAGTAACCGTTGTTTCTCATGAAATCTTTATTGAATCTATCTTGCTGAAAAGGTTTTTCAAATTTAAAATTTTCTATGTTCTTTTCAGTCATCTTCGACTTCACCAAAATCTCTGTCCAATGTTTCCCCATTGTCGAATACCTTCTGGACATCACATTTTCCACAAGATTATCTTTTTTATTGACTTCTCATTGATCCTCTTCTATATTATTGATAGTTTCCGGATAATAACATTGTATGTTTCTTGCGCAACATCAATTGAAAAATGAGCCCACAGATGGTAACAACGGATACGGAGAATTGAGGTGTCAGTTTTGCGGATTAGGCGACGTTTGTTTTATTTACGTTTGTTATTGCATGTTATGAGATTAACACATGAGATGCGTGAGGTAAAATGCGGTGGTCTTCCCCGTCAAGTATCTTGAATGAATAAAATATTCTAGTTTTAGCAGTAAAACAGAAGAAAATGTTTTTTGAGACTGAAAATTTCTGGCAGATGATTCCAGACTAACCTGCGAATGTAAATCTGCAAGTTTTTGAATAAAATGTTGGAAAATCTTTTGTAAAATTGTAGAGTGTTCGGGATATATTTTTCACTAAAAATATAAGAAAATTTTAGATTTCAAACATAACAATTTTCAGATAAATACTT</canonical>
            <polymorphic>AACATAGTCATACTGAAAAAAAAACTGTGACTGGAGTTCTATCTTTTTATTCAATAAAACAATAGATTGTACAAAACATACTAAAAAAACCACGGCCAGGCCTAGTCGGCCCGAGTTTTTTACATTTGAAAAAGTTTTGAAATTTCAGTAAAGTTTCAAACTTCTCGCTTGACAGAGATTTCGTTAACATTTTTGATTGACTTCAAAAAAACGGGCTGAACAGAGAAAGTTCTGAAAAAAGCATGATCTGGCCCGGCCCTTCGCAAGTATGATTGAAACTCTGAAACGGGAATTTTCAAAATTTTTAACTCGATAAAAAAGGAAATGTCTTTTTAGTAAATGGTTTGCCAGTAACCGTTGTTTCTCATGAAATCTTTATTGAATCTATCTTGCTGAAAAGGTTTTTCAAATTTAAAATTTTCTATGTTCTTTTCAGTCATCTTCGACTTCACCAAAATCTCTGTCCAATGTTTCCCCATTGTCGAATACCTTCTGGACAWCACATTTTCCACAAGATTATCTTTTTTATTGACTTCTCATTGATCCTCTTCTATATTATTGATAGTTTCCGGATAATAACATTGTATGTTTCTTGCGCAACATCAATTGAAAAATGAGCCCACAGATGGTAACAACGGATACGGAGAATTGAGGTGTCAGTTTTGCGGATTAGGCGACGTTTGTTTTATTTACGTTTGTTATTGCATGTTATGAGATTAACACATGAGATGCGTGAGGTAAAATGCGGTGGTCTTCCCCGTCAAGTATCTTGAATGAATAAAATATTCTAGTTTTAGCAGTAAAACAGAAGAAAATGTTTTTTGAGACTGAAAATTTCTGGCAGATGATTCCAGACTAACCTGCGAATGTAAATCTGCAAGTTTTTGAATAAAATGTTGGAAAATCTTTTGTAAAATTGTAGAGTGTTCGGGATATATTTTTCACTAAAAATATAAGAAAATTTTAGATTTCAAACATAACAATTTTCAGATAAATACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCAAAATCTCTGTCCAATG</pcr_primer_p1>
		<pcr_primer_p2>CAAACGTAAATAAAACAAACGTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACCAAAATCTCTGTCCAATGTTTCCCCATTGTCGAATACCTTCTGGACATCACATTTTCCACAAGATTATCTTTTTTATTGACTTCTCATTGATCCTCTTCTATATTATTGATAGTTTCCGGATAATAACATTGTATGTTTCTTGCGCAACATCAATTGAAAAATGAGCCCACAGATGGTAACAACGGATACGGAGAATTGAGGTGTCAGTTTTGCGGATTAGGCGACGTTTGTTTTATTTACGTTTG</canonical_amplicon>
		<polymorphic_amplicon>ACCAAAATCTCTGTCCAATGTTTCCCCATTGTCGAATACCTTCTGGACAWCACATTTTCCACAAGATTATCTTTTTTATTGACTTCTCATTGATCCTCTTCTATATTATTGATAGTTTCCGGATAATAACATTGTATGTTTCTTGCGCAACATCAATTGAAAAATGAGCCCACAGATGGTAACAACGGATACGGAGAATTGAGGTGTCAGTTTTGCGGATTAGGCGACGTTTGTTTTATTTACGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7400</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>316469</contig_pos>
        <strand>+</strand>
        <context>TCTTTATTGA[A/T]TCTATCTTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAGTAAATGGTTTGCCAGTAACCGTTGTTTCTCATGAAATCTTTATTGA</left_flank>
        <right_flank>TCTATCTTGCTGAAAAGGTTTTTCAAATTTAAAATTTTCTATGTTCTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAAAATTTTTCTCGAATCGGAAAAAAAGGGTGATCAGTATTTCTTTGTGCTCTTATTTTTAATCTCGAACAGTAATTTTTGATATTAGCTCAGATTGCCAGAGAGGAAATGAGTTAACATAGTCATACTGAAAAAAAAACTGTGACTGGAGTTCTATCTTTTTATTCAATAAAACAATAGATTGTACAAAACATACTAAAAAAACCACGGCCAGGCCTAGTCGGCCCGAGTTTTTTACATTTGAAAAAGTTTTGAAATTTCAGTAAAGTTTCAAACTTCTCGCTTGACAGAGATTTCGTTAACATTTTTGATTGACTTCAAAAAAACGGGCTGAACAGAGAAAGTTCTGAAAAAAGCATGATCTGGCCCGGCCCTTCGCAAGTATGATTGAAACTCTGAAACGGGAATTTTCAAAATTTTTAACTCGATAAAAAAGGAAATGTCTTTTTAGTAAATGGTTTGCCAGTAACCGTTGTTTCTCATGAAATCTTTATTGAATCTATCTTGCTGAAAAGGTTTTTCAAATTTAAAATTTTCTATGTTCTTTTCAGTCATCTTCGACTTCACCAAAATCTCTGTCCAATGTTTCCCCATTGTCGAATACCTTCTGGACATCACATTTTCCACAAGATTATCTTTTTTATTGACTTCTCATTGATCCTCTTCTATATTATTGATAGTTTCCGGATAATAACATTGTATGTTTCTTGCGCAACATCAATTGAAAAATGAGCCCACAGATGGTAACAACGGATACGGAGAATTGAGGTGTCAGTTTTGCGGATTAGGCGACGTTTGTTTTATTTACGTTTGTTATTGCATGTTATGAGATTAACACATGAGATGCGTGAGGTAAAATGCGGTGGTCTTCCCCGTCAAGTATCTTGAATGAATAAAATATTCTAGTTTTAGCAGTAAAACAGAAGAAAATGTTTTTTGAGACTGAAAATTTCTGGCAGATGATTCCAGACTAACCTGCGAATGTAAATCTGCAAGTT</canonical>
            <polymorphic>TCAAAAATTTTTCTCGAATCGGAAAAAAAGGGTGATCAGTATTTCTTTGTGCTCTTATTTTTAATCTCGAACAGTAATTTTTGATATTAGCTCAGATTGCCAGAGAGGAAATGAGTTAACATAGTCATACTGAAAAAAAAACTGTGACTGGAGTTCTATCTTTTTATTCAATAAAACAATAGATTGTACAAAACATACTAAAAAAACCACGGCCAGGCCTAGTCGGCCCGAGTTTTTTACATTTGAAAAAGTTTTGAAATTTCAGTAAAGTTTCAAACTTCTCGCTTGACAGAGATTTCGTTAACATTTTTGATTGACTTCAAAAAAACGGGCTGAACAGAGAAAGTTCTGAAAAAAGCATGATCTGGCCCGGCCCTTCGCAAGTATGATTGAAACTCTGAAACGGGAATTTTCAAAATTTTTAACTCGATAAAAAAGGAAATGTCTTTTTAGTAAATGGTTTGCCAGTAACCGTTGTTTCTCATGAAATCTTTATTGAWTCTATCTTGCTGAAAAGGTTTTTCAAATTTAAAATTTTCTATGTTCTTTTCAGTCATCTTCGACTTCACCAAAATCTCTGTCCAATGTTTCCCCATTGTCGAATACCTTCTGGACATCACATTTTCCACAAGATTATCTTTTTTATTGACTTCTCATTGATCCTCTTCTATATTATTGATAGTTTCCGGATAATAACATTGTATGTTTCTTGCGCAACATCAATTGAAAAATGAGCCCACAGATGGTAACAACGGATACGGAGAATTGAGGTGTCAGTTTTGCGGATTAGGCGACGTTTGTTTTATTTACGTTTGTTATTGCATGTTATGAGATTAACACATGAGATGCGTGAGGTAAAATGCGGTGGTCTTCCCCGTCAAGTATCTTGAATGAATAAAATATTCTAGTTTTAGCAGTAAAACAGAAGAAAATGTTTTTTGAGACTGAAAATTTCTGGCAGATGATTCCAGACTAACCTGCGAATGTAAATCTGCAAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>482 466 36 16</canonical_bands>
                <polymorphic_bands>948 36 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAACAGAGAAAGTTCTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>GGACAGAGATTTTGGTGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTGAACAGAGAAAGTTCTGAAAAAAGCATGATCTGGCCCGGCCCTTCGCAAGTATGATTGAAACTCTGAAACGGGAATTTTCAAAATTTTTAACTCGATAAAAAAGGAAATGTCTTTTTAGTAAATGGTTTGCCAGTAACCGTTGTTTCTCATGAAATCTTTATTGAATCTATCTTGCTGAAAAGGTTTTTCAAATTTAAAATTTTCTATGTTCTTTTCAGTCATCTTCGACTTCACCAAAATCTCTGTCC</canonical_amplicon>
		<polymorphic_amplicon>CTGAACAGAGAAAGTTCTGAAAAAAGCATGATCTGGCCCGGCCCTTCGCAAGTATGATTGAAACTCTGAAACGGGAATTTTCAAAATTTTTAACTCGATAAAAAAGGAAATGTCTTTTTAGTAAATGGTTTGCCAGTAACCGTTGTTTCTCATGAAATCTTTATTGAWTCTATCTTGCTGAAAAGGTTTTTCAAATTTAAAATTTTCTATGTTCTTTTCAGTCATCTTCGACTTCACCAAAATCTCTGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7401</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>335296</contig_pos>
        <strand>+</strand>
        <context>CATTTCGAAA[A/T]ATTCGGTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGATCCGTCGAAAATATCAGATTATTTTATGAAATCCTCATTTCGAAA</left_flank>
        <right_flank>ATTCGGTTTTAGATTGTATAACTGAGATTAGAACCCACTATCCATGACGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCTTTTTTTAAAGCTTCCTCTAAGAAAAAACTACACACAGAGCAGTGGAAACAATGTTAATGATTCAGGACAAAGGGAAAAAAGTGGGTGTGTATTTGGTATCATCGGAAAAAATCAGAAAAGAGAGCCAAAAAAAAAAGAGTTCGGTGTTATAATGATATTGATTTCCGATTAGGTCAATGTGATGTCAGAAAACAAACATTTATCGACACTACGGCAACCGATTGGAGAAAGGAAAAGAAGGAAAGAGTGACTTCCGCAAGAAGTAAACTCCTCTCAATGGTATGCACAAGCAAACAGGGAGACACTACCGCCCACGCTCTTATGGTTGCGGTTTTGGTTTCGTATTTGGCATTTCGGCCGGCTCGTTGTGCATTTTTTCGTTTTGGTCAAAAAGTCAATGAAGGCGGAGTTTCAGAAAAAAAATGACATAAAAACGCGTGGGCTTTTGATCCGTCGAAAATATCAGATTATTTTATGAAATCCTCATTTCGAAATATTCGGTTTTAGATTGTATAACTGAGATTAGAACCCACTATCCATGACGACAATAGCAATTCTAATACCAGTATCAAAGTTCGAAACTGGTTTTAGAAGATTAATCAGGCTAGAAGCACGTTTTGTAAAAATCGGAAATGTGGGGTTTCGAAAGGCTTCTTTTTTCTTTCCAATTTGAAATTAGAAAATGTGCAATGACGGGAAGTTCCGATATAGCAAAAGTGATGCATAACGCCTTAAAGCAATGAGAGAGAAAAAAAAACTATAAGGTTTACTCTTCACAACTTGAGAGGGTTTTTAGAGTTGTGGTTGAGATATTGGGGAAGCGGGGAGATTGGATTACAAGGCTTTCAATGAGAGATTTTTAGGGGAGAAATGTGTGTACAACGGAGAGAGTAGTAAAAATCTAGATAAAAAAATGTTATAAATTATTTACAATACCGTGGATTGAAAAATATTGTTTTTGAGCGACTTGACTGAAAAATTTGGAATTCGAAATT</canonical>
            <polymorphic>CATCTTTTTTTAAAGCTTCCTCTAAGAAAAAACTACACACAGAGCAGTGGAAACAATGTTAATGATTCAGGACAAAGGGAAAAAAGTGGGTGTGTATTTGGTATCATCGGAAAAAATCAGAAAAGAGAGCCAAAAAAAAAAGAGTTCGGTGTTATAATGATATTGATTTCCGATTAGGTCAATGTGATGTCAGAAAACAAACATTTATCGACACTACGGCAACCGATTGGAGAAAGGAAAAGAAGGAAAGAGTGACTTCCGCAAGAAGTAAACTCCTCTCAATGGTATGCACAAGCAAACAGGGAGACACTACCGCCCACGCTCTTATGGTTGCGGTTTTGGTTTCGTATTTGGCATTTCGGCCGGCTCGTTGTGCATTTTTTCGTTTTGGTCAAAAAGTCAATGAAGGCGGAGTTTCAGAAAAAAAATGACATAAAAACGCGTGGGCTTTTGATCCGTCGAAAATATCAGATTATTTTATGAAATCCTCATTTCGAAAWATTCGGTTTTAGATTGTATAACTGAGATTAGAACCCACTATCCATGACGACAATAGCAATTCTAATACCAGTATCAAAGTTCGAAACTGGTTTTAGAAGATTAATCAGGCTAGAAGCACGTTTTGTAAAAATCGGAAATGTGGGGTTTCGAAAGGCTTCTTTTTTCTTTCCAATTTGAAATTAGAAAATGTGCAATGACGGGAAGTTCCGATATAGCAAAAGTGATGCATAACGCCTTAAAGCAATGAGAGAGAAAAAAAAACTATAAGGTTTACTCTTCACAACTTGAGAGGGTTTTTAGAGTTGTGGTTGAGATATTGGGGAAGCGGGGAGATTGGATTACAAGGCTTTCAATGAGAGATTTTTAGGGGAGAAATGTGTGTACAACGGAGAGAGTAGTAAAAATCTAGATAAAAAAATGTTATAAATTATTTACAATACCGTGGATTGAAAAATATTGTTTTTGAGCGACTTGACTGAAAAATTTGGAATTCGAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 456 44</canonical_bands>
                <polymorphic_bands>956 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGATCCGTCGAAAATATC</pcr_primer_p1>
		<pcr_primer_p2>GTCATTGCACATTTTCTAATTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGATCCGTCGAAAATATCAGATTATTTTATGAAATCCTCATTTCGAAATATTCGGTTTTAGATTGTATAACTGAGATTAGAACCCACTATCCATGACGACAATAGCAATTCTAATACCAGTATCAAAGTTCGAAACTGGTTTTAGAAGATTAATCAGGCTAGAAGCACGTTTTGTAAAAATCGGAAATGTGGGGTTTCGAAAGGCTTCTTTTTTCTTTCCAATTTGAAATTAGAAAATGTGCAATGAC</canonical_amplicon>
		<polymorphic_amplicon>TTTGATCCGTCGAAAATATCAGATTATTTTATGAAATCCTCATTTCGAAAWATTCGGTTTTAGATTGTATAACTGAGATTAGAACCCACTATCCATGACGACAATAGCAATTCTAATACCAGTATCAAAGTTCGAAACTGGTTTTAGAAGATTAATCAGGCTAGAAGCACGTTTTGTAAAAATCGGAAATGTGGGGTTTCGAAAGGCTTCTTTTTTCTTTCCAATTTGAAATTAGAAAATGTGCAATGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7402</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>342895</contig_pos>
        <strand>+</strand>
        <context>TCGAGCATAC[G/T]CATCACTATC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTCCGATCCATAGGCGTATTTCATATCAGAAGACAATGCTCGAGCATAC</left_flank>
        <right_flank>CATCACTATCAACAAATGGTGATGGTTCGAAGGATTTCAGTGCAATTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTACCACCGATGAAAAAAATCAAATCCGAAAAGTTAAATAAAAATTCACTAACTTCAAATATGACACATAACGACCCGACGGAGACCACCAAACGGCTCCAGACCCATCCAAGATCTCCTCCTCATACAACCAGTTGCTGAACCCAAATCTATTAAAAGTAGTTCCTCCAGATGTCAACTGAATTGCATCATTTGGTTTTTCCGGATCCTTTTGATAGTACAAATTGTAGTTGTGAACGTAAACAAAATCATGACTGGATTTGTTTGGATTCCAGTAAAATGCTTGGATAAGAGCGTTCTCTTCTGGTCCAACATGCCATCTCTCACTGAAATGAACCAAGATAGATTCAAAAAAGTGGCTGAAGCACTCACGTGGACGCTGTTCCATTTATCATTTTAACAATATGATAGAGATACTCGGCAGAATGTCTAAACAACTCGTTCACTCTCTCCGATCCATAGGCGTATTTCATATCAGAAGACAATGCTCGAGCATACTCATCACTATCAACAAATGGTGATGGTTCGAAGGATTTCAGTGCAATTTTTGAAATTTTTGGTTTTGTCTAAATACTTTTTTCAAATTAAACAACTAAATACTTCCATCAAGTTTTTACCATCGATTCATCATTTTTGATATGCACAAATGATCCATCTGGTAGCCACATATAGTCATGGGAATCAATAAGGAATCGTTTTCCAGAAAACAACATATCGAATGTGAAGCGTTTTGTAAATGTGGGGAATACGCGAAGTTGCGGTTTCGAAGACGTTTCTTCAGGTGAGGCTACAAGTCCGGAGGCATTGAGAGGAGTTTGAGCAGTAAGATCGATTGCTGGAAAGAAATTAAAAGTTTAGTAGCAGACCATAGCATGAATAGATTTTCCAACGTTTTTAATATTCGAAAGTTTTAAATAATGTTCCAATATTGACCATTTTTTGTTTTATTGATCTTCCCTACACGGGAAAACCAAAACTTTTGTCCGGAAGTGAAATTTC</canonical>
            <polymorphic>GGTACCACCGATGAAAAAAATCAAATCCGAAAAGTTAAATAAAAATTCACTAACTTCAAATATGACACATAACGACCCGACGGAGACCACCAAACGGCTCCAGACCCATCCAAGATCTCCTCCTCATACAACCAGTTGCTGAACCCAAATCTATTAAAAGTAGTTCCTCCAGATGTCAACTGAATTGCATCATTTGGTTTTTCCGGATCCTTTTGATAGTACAAATTGTAGTTGTGAACGTAAACAAAATCATGACTGGATTTGTTTGGATTCCAGTAAAATGCTTGGATAAGAGCGTTCTCTTCTGGTCCAACATGCCATCTCTCACTGAAATGAACCAAGATAGATTCAAAAAAGTGGCTGAAGCACTCACGTGGACGCTGTTCCATTTATCATTTTAACAATATGATAGAGATACTCGGCAGAATGTCTAAACAACTCGTTCACTCTCTCCGATCCATAGGCGTATTTCATATCAGAAGACAATGCTCGAGCATACKCATCACTATCAACAAATGGTGATGGTTCGAAGGATTTCAGTGCAATTTTTGAAATTTTTGGTTTTGTCTAAATACTTTTTTCAAATTAAACAACTAAATACTTCCATCAAGTTTTTACCATCGATTCATCATTTTTGATATGCACAAATGATCCATCTGGTAGCCACATATAGTCATGGGAATCAATAAGGAATCGTTTTCCAGAAAACAACATATCGAATGTGAAGCGTTTTGTAAATGTGGGGAATACGCGAAGTTGCGGTTTCGAAGACGTTTCTTCAGGTGAGGCTACAAGTCCGGAGGCATTGAGAGGAGTTTGAGCAGTAAGATCGATTGCTGGAAAGAAATTAAAAGTTTAGTAGCAGACCATAGCATGAATAGATTTTCCAACGTTTTTAATATTCGAAAGTTTTAAATAATGTTCCAATATTGACCATTTTTTGTTTTATTGATCTTCCCTACACGGGAAAACCAAAACTTTTGTCCGGAAGTGAAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCACTGAAATGAACCAAGATAG</pcr_primer_p1>
		<pcr_primer_p2>TTTAGACAAAACCAAAAATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCACTGAAATGAACCAAGATAGATTCAAAAAAGTGGCTGAAGCACTCACGTGGACGCTGTTCCATTTATCATTTTAACAATATGATAGAGATACTCGGCAGAATGTCTAAACAACTCGTTCACTCTCTCCGATCCATAGGCGTATTTCATATCAGAAGACAATGCTCGAGCATACTCATCACTATCAACAAATGGTGATGGTTCGAAGGATTTCAGTGCAATTTTTGAAATTTTTGGTTTTGTCTAAA</canonical_amplicon>
		<polymorphic_amplicon>CTCACTGAAATGAACCAAGATAGATTCAAAAAAGTGGCTGAAGCACTCACGTGGACGCTGTTCCATTTATCATTTTAACAATATGATAGAGATACTCGGCAGAATGTCTAAACAACTCGTTCACTCTCTCCGATCCATAGGCGTATTTCATATCAGAAGACAATGCTCGAGCATACKCATCACTATCAACAAATGGTGATGGTTCGAAGGATTTCAGTGCAATTTTTGAAATTTTTGGTTTTGTCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7403</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>343245</contig_pos>
        <strand>+</strand>
        <context>GAAAGAAATT[A/G]AAAGTTTAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGGCATTGAGAGGAGTTTGAGCAGTAAGATCGATTGCTGGAAAGAAATT</left_flank>
        <right_flank>AAAGTTTAGTAGCAGACCATAGCATGAATAGATTTTCCAACGTTTTTAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAGTGGCTGAAGCACTCACGTGGACGCTGTTCCATTTATCATTTTAACAATATGATAGAGATACTCGGCAGAATGTCTAAACAACTCGTTCACTCTCTCCGATCCATAGGCGTATTTCATATCAGAAGACAATGCTCGAGCATACTCATCACTATCAACAAATGGTGATGGTTCGAAGGATTTCAGTGCAATTTTTGAAATTTTTGGTTTTGTCTAAATACTTTTTTCAAATTAAACAACTAAATACTTCCATCAAGTTTTTACCATCGATTCATCATTTTTGATATGCACAAATGATCCATCTGGTAGCCACATATAGTCATGGGAATCAATAAGGAATCGTTTTCCAGAAAACAACATATCGAATGTGAAGCGTTTTGTAAATGTGGGGAATACGCGAAGTTGCGGTTTCGAAGACGTTTCTTCAGGTGAGGCTACAAGTCCGGAGGCATTGAGAGGAGTTTGAGCAGTAAGATCGATTGCTGGAAAGAAATTAAAAGTTTAGTAGCAGACCATAGCATGAATAGATTTTCCAACGTTTTTAATATTCGAAAGTTTTAAATAATGTTCCAATATTGACCATTTTTTGTTTTATTGATCTTCCCTACACGGGAAAACCAAAACTTTTGTCCGGAAGTGAAATTTCGAACTGCAAGATCATATTTCATTTTTTCATTCTAATAAAATTCCACTCTATACTTGCACTTCGAGATCAATTATCTTAGTTTCTATAAGAGATATCATAATCTGTTGACTGATAAAATGTTTGCCCTGATGTCACCAAAACTTTAGCAGTTGGCAGATTTTTGATATCTCTAATAGGAACCAAGATAATTAAGCTCAAACTGCACAAATAGGGTGTGCTTCTGTTCTTTAACATTTTTGATTTGACTGATTTAAAGCACAATTCCATGATTTTTTATATACATTTTCAGAGTTGACAAACAATTCAAATGAATTCTAAAAAACTGATTAGCGATTTCGAATTTATTTTTT</canonical>
            <polymorphic>AAAAAAGTGGCTGAAGCACTCACGTGGACGCTGTTCCATTTATCATTTTAACAATATGATAGAGATACTCGGCAGAATGTCTAAACAACTCGTTCACTCTCTCCGATCCATAGGCGTATTTCATATCAGAAGACAATGCTCGAGCATACTCATCACTATCAACAAATGGTGATGGTTCGAAGGATTTCAGTGCAATTTTTGAAATTTTTGGTTTTGTCTAAATACTTTTTTCAAATTAAACAACTAAATACTTCCATCAAGTTTTTACCATCGATTCATCATTTTTGATATGCACAAATGATCCATCTGGTAGCCACATATAGTCATGGGAATCAATAAGGAATCGTTTTCCAGAAAACAACATATCGAATGTGAAGCGTTTTGTAAATGTGGGGAATACGCGAAGTTGCGGTTTCGAAGACGTTTCTTCAGGTGAGGCTACAAGTCCGGAGGCATTGAGAGGAGTTTGAGCAGTAAGATCGATTGCTGGAAAGAAATTRAAAGTTTAGTAGCAGACCATAGCATGAATAGATTTTCCAACGTTTTTAATATTCGAAAGTTTTAAATAATGTTCCAATATTGACCATTTTTTGTTTTATTGATCTTCCCTACACGGGAAAACCAAAACTTTTGTCCGGAAGTGAAATTTCGAACTGCAAGATCATATTTCATTTTTTCATTCTAATAAAATTCCACTCTATACTTGCACTTCGAGATCAATTATCTTAGTTTCTATAAGAGATATCATAATCTGTTGACTGATAAAATGTTTGCCCTGATGTCACCAAAACTTTAGCAGTTGGCAGATTTTTGATATCTCTAATAGGAACCAAGATAATTAAGCTCAAACTGCACAAATAGGGTGTGCTTCTGTTCTTTAACATTTTTGATTTGACTGATTTAAAGCACAATTCCATGATTTTTTATATACATTTTCAGAGTTGACAAACAATTCAAATGAATTCTAAAAAACTGATTAGCGATTTCGAATTTATTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>277 262 188 99 48 48 39 23 16</canonical_bands>
                <polymorphic_bands>310 277 188 99 48 39 23 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATGTGAAGCGTTTTGTAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGTAGGGAAGATCAATAAAACAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAATGTGAAGCGTTTTGTAAATGTGGGGAATACGCGAAGTTGCGGTTTCGAAGACGTTTCTTCAGGTGAGGCTACAAGTCCGGAGGCATTGAGAGGAGTTTGAGCAGTAAGATCGATTGCTGGAAAGAAATTAAAAGTTTAGTAGCAGACCATAGCATGAATAGATTTTCCAACGTTTTTAATATTCGAAAGTTTTAAATAATGTTCCAATATTGACCATTTTTTGTTTTATTGATCTTCCCTACA</canonical_amplicon>
		<polymorphic_amplicon>GAATGTGAAGCGTTTTGTAAATGTGGGGAATACGCGAAGTTGCGGTTTCGAAGACGTTTCTTCAGGTGAGGCTACAAGTCCGGAGGCATTGAGAGGAGTTTGAGCAGTAAGATCGATTGCTGGAAAGAAATTRAAAGTTTAGTAGCAGACCATAGCATGAATAGATTTTCCAACGTTTTTAATATTCGAAAGTTTTAAATAATGTTCCAATATTGACCATTTTTTGTTTTATTGATCTTCCCTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7404</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>346673</contig_pos>
        <strand>+</strand>
        <context>GGCGGAGCAG[G/T]GGTTTCCGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAAAGCAAAGCCCAATGCAATTATTCTTTAAAATTTATGGCGGAGCAG</left_flank>
        <right_flank>GGTTTCCGTTAGGTTCGAGCGAAGAAAAGAAAAAAAGATAGAATCGCGGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGAAGAAGAGTTATGAATGTTAATTTTGAAAAGGGAAAAAACATTTTCAGTCATTACTTAACGGATAGATTCATCATTCTCAAATATATACTTTTCAATTTTTTCTAATACTGAAAAGCATAATTTAAATGATCTGGGCTGATCTTTTTTCAGCATTATCTCAATTCCTTTGCAAGATATCAAAAATGTGTGAACTGACCAAATGTTAGTGATATTATTATAAACAATTTATCAATTAACAACATTTTTATATATCTGATATAAACCGAGATAGTTTTTCTCGAAGTTAAAAGTTAGGATGTTCTTATATTAAAAGGTTTACAATATTCCAAAAAAAAACTAAAAAGTGTACTAACCTAGAACACAATCGAATTAGAAAATAAGAGTGAGAAACCAGAAATAATTAAATCTATACATCTATATGTAAAAAAGCACAACCCGCTGAAAAAAAAAGCAAAGCCCAATGCAATTATTCTTTAAAATTTATGGCGGAGCAGGGGTTTCCGTTAGGTTCGAGCGAAGAAAAGAAAAAAAGATAGAATCGCGGACTTTCTTATTAATTTTACGAAAAATGAGCTCAACAGGTGTGACTTAACACCACCACTGGCCCCAGCCTAACACTTGTTTTACAAACGGAAGACAAACGGGATGGGACAAGATCGCTCATGATTTGTTAAACTCTTTTCTCGTCGATTTCATTGAATAACACTGGCTGGGAGGAAGTGAAGGAAAACGAAACAAAACACGTAGTTTTTTCTGTGTTGTGACAGTTTTATTAAATCTGGGTACTGTTGCATAGCCGTGGTTTAAAAGTTTTCGTTTTGATGTTTTTGTGTCTGTTTCATCTTGTTTTATCTCGTTTCCAGTTTTGACTAGTTGAAATAATAACACAGAAATAATAAAAAGTGGGAAGCAAAACTTAAAAGTTTGAGTTTTGATTCTTTTAGAAAACAAAAAGATGAAGCTAAAAGATATGAACTAGTGAATAGGGTTTTGAT</canonical>
            <polymorphic>AGAGAAGAAGAGTTATGAATGTTAATTTTGAAAAGGGAAAAAACATTTTCAGTCATTACTTAACGGATAGATTCATCATTCTCAAATATATACTTTTCAATTTTTTCTAATACTGAAAAGCATAATTTAAATGATCTGGGCTGATCTTTTTTCAGCATTATCTCAATTCCTTTGCAAGATATCAAAAATGTGTGAACTGACCAAATGTTAGTGATATTATTATAAACAATTTATCAATTAACAACATTTTTATATATCTGATATAAACCGAGATAGTTTTTCTCGAAGTTAAAAGTTAGGATGTTCTTATATTAAAAGGTTTACAATATTCCAAAAAAAAACTAAAAAGTGTACTAACCTAGAACACAATCGAATTAGAAAATAAGAGTGAGAAACCAGAAATAATTAAATCTATACATCTATATGTAAAAAAGCACAACCCGCTGAAAAAAAAAGCAAAGCCCAATGCAATTATTCTTTAAAATTTATGGCGGAGCAGKGGTTTCCGTTAGGTTCGAGCGAAGAAAAGAAAAAAAGATAGAATCGCGGACTTTCTTATTAATTTTACGAAAAATGAGCTCAACAGGTGTGACTTAACACCACCACTGGCCCCAGCCTAACACTTGTTTTACAAACGGAAGACAAACGGGATGGGACAAGATCGCTCATGATTTGTTAAACTCTTTTCTCGTCGATTTCATTGAATAACACTGGCTGGGAGGAAGTGAAGGAAAACGAAACAAAACACGTAGTTTTTTCTGTGTTGTGACAGTTTTATTAAATCTGGGTACTGTTGCATAGCCGTGGTTTAAAAGTTTTCGTTTTGATGTTTTTGTGTCTGTTTCATCTTGTTTTATCTCGTTTCCAGTTTTGACTAGTTGAAATAATAACACAGAAATAATAAAAAGTGGGAAGCAAAACTTAAAAGTTTGAGTTTTGATTCTTTTAGAAAACAAAAAGATGAAGCTAAAAGATATGAACTAGTGAATAGGGTTTTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAACCTAGAACACAATCGAATTA</pcr_primer_p1>
		<pcr_primer_p2>GTGTTAAGTCACACCTGTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTAACCTAGAACACAATCGAATTAGAAAATAAGAGTGAGAAACCAGAAATAATTAAATCTATACATCTATATGTAAAAAAGCACAACCCGCTGAAAAAAAAAGCAAAGCCCAATGCAATTATTCTTTAAAATTTATGGCGGAGCAGGGGTTTCCGTTAGGTTCGAGCGAAGAAAAGAAAAAAAGATAGAATCGCGGACTTTCTTATTAATTTTACGAAAAATGAGCTCAACAGGTGTGACTTAACAC</canonical_amplicon>
		<polymorphic_amplicon>CTAACCTAGAACACAATCGAATTAGAAAATAAGAGTGAGAAACCAGAAATAATTAAATCTATACATCTATATGTAAAAAAGCACAACCCGCTGAAAAAAAAAGCAAAGCCCAATGCAATTATTCTTTAAAATTTATGGCGGAGCAGKGGTTTCCGTTAGGTTCGAGCGAAGAAAAGAAAAAAAGATAGAATCGCGGACTTTCTTATTAATTTTACGAAAAATGAGCTCAACAGGTGTGACTTAACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7405</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>417248</contig_pos>
        <strand>+</strand>
        <context>ATATGACGAT[G/T]TTACTGTAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAGTTGGTTACTCTTATGCTTACAACAACACTAACATTCAATATGACGAT</left_flank>
        <right_flank>TTACTGTAAGTGAACAAATAATCGGATTTATCAATTAATTTTCGGACAAC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGTCACACCACAACCAATTTTCACCAACTTGGTCACTACACCAAACTGCACAGTTGGAACTTCCGATCGTATTATCAACTTGCCAGGAATTCCAGCTGATATGCAGTTCAAGCAATACTCTGGATTCTTGGATGGACTTTCAGGACATAAAGTTCATTACTGGTATAACCATAGTGTTTAGAATCATAAAAATTATTGAGGTTTAGGCTCGTGGAATCTGAAAACAATCCGTCTACTGATCCACTGTTGTTGTGGTTAAATGGAGGTCCTGGATCCAGTTCTCTGATGGGTCTTTTTGAAGAAAACGGGCCATTCCGTGTCAGCAAAGACTCGCAGACTCTGTCACGTAATCCTTATTCATGGAACAAGGTGAGTTTTGGGTTTCAGAAAGTTCTTATATGCTGTAATTTCAGTTCGCCAACGTCTTGTATCTGGAAAGTCCAATTGGAGTTGGTTACTCTTATGCTTACAACAACACTAACATTCAATATGACGATTTTACTGTAAGTGAACAAATAATCGGATTTATCAATTAATTTTCGGACAACTCGATCATTTTCATGAGTCTGTAGCTCAGGTGTCCAGTGTCGGATCACTTTGAAACTTTCGGAGGGTGTAAAACTGACCTAGATTGAAAATATCGCAATCACAGAATTTGTGAAAGTTTCCAGTTTTTCAGATATTTGCAAATTTCTAAAAGGCCTAATTATTTCACTTGTTAAGTACAAAACGAGCAAAAAGGTGTCTTCCAGGAATTGGCAAAAAGCTGAAAAAAACTTTAAAAGAAATTGGTGAATGCAAAGTTTTCAATCTTGATCTGTTGAAATCTGTCAAAAATCTCCCAAGTTATCGAAAACATGACAGCCGAGCTCCAAACTCCTGAAAATGACCAACATGGTCGAAAATCAACTGGAAAATATGTTTCCGTATATCTTATCGACCATTACTGTATCTTCATCATTGTGTTCCAGACCGCCCAGGAAAACTATGCTGCACTC</canonical>
            <polymorphic>GACGTCACACCACAACCAATTTTCACCAACTTGGTCACTACACCAAACTGCACAGTTGGAACTTCCGATCGTATTATCAACTTGCCAGGAATTCCAGCTGATATGCAGTTCAAGCAATACTCTGGATTCTTGGATGGACTTTCAGGACATAAAGTTCATTACTGGTATAACCATAGTGTTTAGAATCATAAAAATTATTGAGGTTTAGGCTCGTGGAATCTGAAAACAATCCGTCTACTGATCCACTGTTGTTGTGGTTAAATGGAGGTCCTGGATCCAGTTCTCTGATGGGTCTTTTTGAAGAAAACGGGCCATTCCGTGTCAGCAAAGACTCGCAGACTCTGTCACGTAATCCTTATTCATGGAACAAGGTGAGTTTTGGGTTTCAGAAAGTTCTTATATGCTGTAATTTCAGTTCGCCAACGTCTTGTATCTGGAAAGTCCAATTGGAGTTGGTTACTCTTATGCTTACAACAACACTAACATTCAATATGACGATKTTACTGTAAGTGAACAAATAATCGGATTTATCAATTAATTTTCGGACAACTCGATCATTTTCATGAGTCTGTAGCTCAGGTGTCCAGTGTCGGATCACTTTGAAACTTTCGGAGGGTGTAAAACTGACCTAGATTGAAAATATCGCAATCACAGAATTTGTGAAAGTTTCCAGTTTTTCAGATATTTGCAAATTTCTAAAAGGCCTAATTATTTCACTTGTTAAGTACAAAACGAGCAAAAAGGTGTCTTCCAGGAATTGGCAAAAAGCTGAAAAAAACTTTAAAAGAAATTGGTGAATGCAAAGTTTTCAATCTTGATCTGTTGAAATCTGTCAAAAATCTCCCAAGTTATCGAAAACATGACAGCCGAGCTCCAAACTCCTGAAAATGACCAACATGGTCGAAAATCAACTGGAAAATATGTTTCCGTATATCTTATCGACCATTACTGTATCTTCATCATTGTGTTCCAGACCGCCCAGGAAAACTATGCTGCACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGAGTTGGTTACTCTTATGC</pcr_primer_p1>
		<pcr_primer_p2>TGGAACACAATGATGAAGATAC</pcr_primer_p2>
		<pcr_amplicon_size>526</pcr_amplicon_size>
		<canonical_amplicon>TTGGAGTTGGTTACTCTTATGCTTACAACAACACTAACATTCAATATGACGATTTTACTGTAAGTGAACAAATAATCGGATTTATCAATTAATTTTCGGACAACTCGATCATTTTCATGAGTCTGTAGCTCAGGTGTCCAGTGTCGGATCACTTTGAAACTTTCGGAGGGTGTAAAACTGACCTAGATTGAAAATATCGCAATCACAGAATTTGTGAAAGTTTCCAGTTTTTCAGATATTTGCAAATTTCTAAAAGGCCTAATTATTTCACTTGTTAAGTACAAAACGAGCAAAAAGGTGTCTTCCAGGAATTGGCAAAAAGCTGAAAAAAACTTTAAAAGAAATTGGTGAATGCAAAGTTTTCAATCTTGATCTGTTGAAATCTGTCAAAAATCTCCCAAGTTATCGAAAACATGACAGCCGAGCTCCAAACTCCTGAAAATGACCAACATGGTCGAAAATCAACTGGAAAATATGTTTCCGTATATCTTATCGACCATTACTGTATCTTCATCATTGTGTTCCA</canonical_amplicon>
		<polymorphic_amplicon>TTGGAGTTGGTTACTCTTATGCTTACAACAACACTAACATTCAATATGACGATKTTACTGTAAGTGAACAAATAATCGGATTTATCAATTAATTTTCGGACAACTCGATCATTTTCATGAGTCTGTAGCTCAGGTGTCCAGTGTCGGATCACTTTGAAACTTTCGGAGGGTGTAAAACTGACCTAGATTGAAAATATCGCAATCACAGAATTTGTGAAAGTTTCCAGTTTTTCAGATATTTGCAAATTTCTAAAAGGCCTAATTATTTCACTTGTTAAGTACAAAACGAGCAAAAAGGTGTCTTCCAGGAATTGGCAAAAAGCTGAAAAAAACTTTAAAAGAAATTGGTGAATGCAAAGTTTTCAATCTTGATCTGTTGAAATCTGTCAAAAATCTCCCAAGTTATCGAAAACATGACAGCCGAGCTCCAAACTCCTGAAAATGACCAACATGGTCGAAAATCAACTGGAAAATATGTTTCCGTATATCTTATCGACCATTACTGTATCTTCATCATTGTGTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7406</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>416926</contig_pos>
        <strand>+</strand>
        <context>TAACCATAGT[A/G]TTTAGAATCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTGGATGGACTTTCAGGACATAAAGTTCATTACTGGTATAACCATAGT</left_flank>
        <right_flank>TTTAGAATCATAAAAATTATTGAGGTTTAGGCTCGTGGAATCTGAAAACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATAAAATATTTGATTCTAGGAAATGGGAAAAGGATGTTCAATTTTCGAATTTTTATCTCTCCAGGTAACCTCCCCACGCCAACCATGGTACTACACACAAGGCGCTCAATACGCCACTACCATCGCTGGATATGCAAAATCCTGGACACAGAACTTGGTTCAACTCACTGTCAAAGGATCTGGACATTTTGTTCCATCCGATCGTCCAGCTCAAGCTCTGCAAATGCTGACAAATTTCTTGAGCAACCAGGCCAACTACAGTACTCCAGCTGGAGTGAGACAGGAAAAATATGTAACAGAAATTGAATTTAATTTTAGATTGACGTCACACCACAACCAATTTTCACCAACTTGGTCACTACACCAAACTGCACAGTTGGAACTTCCGATCGTATTATCAACTTGCCAGGAATTCCAGCTGATATGCAGTTCAAGCAATACTCTGGATTCTTGGATGGACTTTCAGGACATAAAGTTCATTACTGGTATAACCATAGTGTTTAGAATCATAAAAATTATTGAGGTTTAGGCTCGTGGAATCTGAAAACAATCCGTCTACTGATCCACTGTTGTTGTGGTTAAATGGAGGTCCTGGATCCAGTTCTCTGATGGGTCTTTTTGAAGAAAACGGGCCATTCCGTGTCAGCAAAGACTCGCAGACTCTGTCACGTAATCCTTATTCATGGAACAAGGTGAGTTTTGGGTTTCAGAAAGTTCTTATATGCTGTAATTTCAGTTCGCCAACGTCTTGTATCTGGAAAGTCCAATTGGAGTTGGTTACTCTTATGCTTACAACAACACTAACATTCAATATGACGATTTTACTGTAAGTGAACAAATAATCGGATTTATCAATTAATTTTCGGACAACTCGATCATTTTCATGAGTCTGTAGCTCAGGTGTCCAGTGTCGGATCACTTTGAAACTTTCGGAGGGTGTAAAACTGACCTAGATTGAAAATATCGCAATCACAGAATTTGTGAAAGTTTCCAGTTTTT</canonical>
            <polymorphic>GATAAAATATTTGATTCTAGGAAATGGGAAAAGGATGTTCAATTTTCGAATTTTTATCTCTCCAGGTAACCTCCCCACGCCAACCATGGTACTACACACAAGGCGCTCAATACGCCACTACCATCGCTGGATATGCAAAATCCTGGACACAGAACTTGGTTCAACTCACTGTCAAAGGATCTGGACATTTTGTTCCATCCGATCGTCCAGCTCAAGCTCTGCAAATGCTGACAAATTTCTTGAGCAACCAGGCCAACTACAGTACTCCAGCTGGAGTGAGACAGGAAAAATATGTAACAGAAATTGAATTTAATTTTAGATTGACGTCACACCACAACCAATTTTCACCAACTTGGTCACTACACCAAACTGCACAGTTGGAACTTCCGATCGTATTATCAACTTGCCAGGAATTCCAGCTGATATGCAGTTCAAGCAATACTCTGGATTCTTGGATGGACTTTCAGGACATAAAGTTCATTACTGGTATAACCATAGTRTTTAGAATCATAAAAATTATTGAGGTTTAGGCTCGTGGAATCTGAAAACAATCCGTCTACTGATCCACTGTTGTTGTGGTTAAATGGAGGTCCTGGATCCAGTTCTCTGATGGGTCTTTTTGAAGAAAACGGGCCATTCCGTGTCAGCAAAGACTCGCAGACTCTGTCACGTAATCCTTATTCATGGAACAAGGTGAGTTTTGGGTTTCAGAAAGTTCTTATATGCTGTAATTTCAGTTCGCCAACGTCTTGTATCTGGAAAGTCCAATTGGAGTTGGTTACTCTTATGCTTACAACAACACTAACATTCAATATGACGATTTTACTGTAAGTGAACAAATAATCGGATTTATCAATTAATTTTCGGACAACTCGATCATTTTCATGAGTCTGTAGCTCAGGTGTCCAGTGTCGGATCACTTTGAAACTTTCGGAGGGTGTAAAACTGACCTAGATTGAAAATATCGCAATCACAGAATTTGTGAAAGTTTCCAGTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>126 110 105 77 70 65 51 37 33 33 32 30 27 26 21 19 19 19 16 13 12 11 11 10 8 7 5 3 2 2</canonical_bands>
                <polymorphic_bands>163 110 105 77 70 65 51 33 33 32 30 27 26 21 19 19 19 16 13 12 11 11 10 8 7 5 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCAAGCAATACTCTGGATTC</pcr_primer_p1>
		<pcr_primer_p2>AATAAGGATTACGTGACAGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GTTCAAGCAATACTCTGGATTCTTGGATGGACTTTCAGGACATAAAGTTCATTACTGGTATAACCATAGTGTTTAGAATCATAAAAATTATTGAGGTTTAGGCTCGTGGAATCTGAAAACAATCCGTCTACTGATCCACTGTTGTTGTGGTTAAATGGAGGTCCTGGATCCAGTTCTCTGATGGGTCTTTTTGAAGAAAACGGGCCATTCCGTGTCAGCAAAGACTCGCAGACTCTGTCACGTAATCCTTATT</canonical_amplicon>
		<polymorphic_amplicon>GTTCAAGCAATACTCTGGATTCTTGGATGGACTTTCAGGACATAAAGTTCATTACTGGTATAACCATAGTRTTTAGAATCATAAAAATTATTGAGGTTTAGGCTCGTGGAATCTGAAAACAATCCGTCTACTGATCCACTGTTGTTGTGGTTAAATGGAGGTCCTGGATCCAGTTCTCTGATGGGTCTTTTTGAAGAAAACGGGCCATTCCGTGTCAGCAAAGACTCGCAGACTCTGTCACGTAATCCTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7469</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>488170</contig_pos>
        <strand>+</strand>
        <context>TACACAATAT[C/T]CCCCCATCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGCATTGGCACTGATGTTCTTCGCTTTGATCGCTGTTCTTACACAATAT</left_flank>
        <right_flank>CCCCCATCCACTGCCATTGCGTCCCGTCCCCTCACCCGTTGTAAAGGGGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATGGTTAACATTTTATCAGTTTACCACTTTTTGGTATCTTTCACAGTAAATGAGATATATTGGCTCAAAGTTAACCATTTGGAAAGTAGTCTATTTGTGTTTAATTTGTGAAAAAGTAATAACCTCAGTTCTGTCGAATCCATCATACTCGAGATCTGGGTATCCAAGGAACATGCATTCCAAATCCTCGTTCTTTGAAATGCCTGCACTCACGAGGCCAACCACTAGCACAAGGCTAGCAAGTTTGATCCAAGTCATTCTGAAGATTGCAACTTTTTTTGACAGAAAAAAAGACGAGAATGGAAGAGGAAAAGCATGGAGATCTTTTTGTCCAAAAAAAAAAAAGGAAAAGAAGTGACAAAAACGAAGACAGTGGGGAGACCGACACAAAAGTCAAAGGGTACGAGGGAGAAAGTGTCTTCTTCTTCCCCGGAGCTCTGGAGGCAGCTGCATTGGCACTGATGTTCTTCGCTTTGATCGCTGTTCTTACACAATATTCCCCCATCCACTGCCATTGCGTCCCGTCCCCTCACCCGTTGTAAAGGGGGAGCTGCGAATAAGCTTGATATACAGAGGTAAGAAACGAGGAAGAAAATGAAGAAAAGCATAAGACGAAAAATGAAGAAGAAGATGAAGAAGATGAAGACTCTCCGGTGAGGCTCTTGCTCTCCTGACTGACTGTGACTGACTTTACACAATATTTGTCGAGATGAAAACAAAAACTACGTGAATTGGGAGGAAAGTGAAAAAAACCGAGGAGTGGGCGAGATTGGTGCGGTGGTTGGCCCTAGGTGAGAGTGATTTCCACGAGTGGCAGTGTGGGGGCAATTGACAAAGTTCATATTTTAAGAATCAAAATCTAGATGTGGTTTATGATATTCAAGATAGTGAATTAAAAGAAGGAAGATACAGTACTGGTCAATAAGATGGAGAAAAACCAATTATTCGTTGATTTTCAAAAGTCTGGAGTTCGGCTGTAAAGTTTCCAATCACTTTGA</canonical>
            <polymorphic>TTATGGTTAACATTTTATCAGTTTACCACTTTTTGGTATCTTTCACAGTAAATGAGATATATTGGCTCAAAGTTAACCATTTGGAAAGTAGTCTATTTGTGTTTAATTTGTGAAAAAGTAATAACCTCAGTTCTGTCGAATCCATCATACTCGAGATCTGGGTATCCAAGGAACATGCATTCCAAATCCTCGTTCTTTGAAATGCCTGCACTCACGAGGCCAACCACTAGCACAAGGCTAGCAAGTTTGATCCAAGTCATTCTGAAGATTGCAACTTTTTTTGACAGAAAAAAAGACGAGAATGGAAGAGGAAAAGCATGGAGATCTTTTTGTCCAAAAAAAAAAAAGGAAAAGAAGTGACAAAAACGAAGACAGTGGGGAGACCGACACAAAAGTCAAAGGGTACGAGGGAGAAAGTGTCTTCTTCTTCCCCGGAGCTCTGGAGGCAGCTGCATTGGCACTGATGTTCTTCGCTTTGATCGCTGTTCTTACACAATATYCCCCCATCCACTGCCATTGCGTCCCGTCCCCTCACCCGTTGTAAAGGGGGAGCTGCGAATAAGCTTGATATACAGAGGTAAGAAACGAGGAAGAAAATGAAGAAAAGCATAAGACGAAAAATGAAGAAGAAGATGAAGAAGATGAAGACTCTCCGGTGAGGCTCTTGCTCTCCTGACTGACTGTGACTGACTTTACACAATATTTGTCGAGATGAAAACAAAAACTACGTGAATTGGGAGGAAAGTGAAAAAAACCGAGGAGTGGGCGAGATTGGTGCGGTGGTTGGCCCTAGGTGAGAGTGATTTCCACGAGTGGCAGTGTGGGGGCAATTGACAAAGTTCATATTTTAAGAATCAAAATCTAGATGTGGTTTATGATATTCAAGATAGTGAATTAAAAGAAGGAAGATACAGTACTGGTCAATAAGATGGAGAAAAACCAATTATTCGTTGATTTTCAAAAGTCTGGAGTTCGGCTGTAAAGTTTCCAATCACTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>497 299 204</canonical_bands>
                <polymorphic_bands>701 299</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGGAAAAGAAGTGACAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CTTACCTCTGTATATCAAGCTTATTC</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AAAGGAAAAGAAGTGACAAAAACGAAGACAGTGGGGAGACCGACACAAAAGTCAAAGGGTACGAGGGAGAAAGTGTCTTCTTCTTCCCCGGAGCTCTGGAGGCAGCTGCATTGGCACTGATGTTCTTCGCTTTGATCGCTGTTCTTACACAATATTCCCCCATCCACTGCCATTGCGTCCCGTCCCCTCACCCGTTGTAAAGGGGGAGCTGCGAATAAGCTTGATATACAGAGGTAAG</canonical_amplicon>
		<polymorphic_amplicon>AAAGGAAAAGAAGTGACAAAAACGAAGACAGTGGGGAGACCGACACAAAAGTCAAAGGGTACGAGGGAGAAAGTGTCTTCTTCTTCCCCGGAGCTCTGGAGGCAGCTGCATTGGCACTGATGTTCTTCGCTTTGATCGCTGTTCTTACACAATATYCCCCCATCCACTGCCATTGCGTCCCGTCCCCTCACCCGTTGTAAAGGGGGAGCTGCGAATAAGCTTGATATACAGAGGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7470</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>488155</contig_pos>
        <strand>+</strand>
        <context>TTTGATCGCT[A/G]TTCTTACACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGCTCTGGAGGCAGCTGCATTGGCACTGATGTTCTTCGCTTTGATCGCT</left_flank>
        <right_flank>TTCTTACACAATATTCCCCCATCCACTGCCATTGCGTCCCGTCCCCTCAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATATTTTTGAGGTTATGGTTAACATTTTATCAGTTTACCACTTTTTGGTATCTTTCACAGTAAATGAGATATATTGGCTCAAAGTTAACCATTTGGAAAGTAGTCTATTTGTGTTTAATTTGTGAAAAAGTAATAACCTCAGTTCTGTCGAATCCATCATACTCGAGATCTGGGTATCCAAGGAACATGCATTCCAAATCCTCGTTCTTTGAAATGCCTGCACTCACGAGGCCAACCACTAGCACAAGGCTAGCAAGTTTGATCCAAGTCATTCTGAAGATTGCAACTTTTTTTGACAGAAAAAAAGACGAGAATGGAAGAGGAAAAGCATGGAGATCTTTTTGTCCAAAAAAAAAAAAGGAAAAGAAGTGACAAAAACGAAGACAGTGGGGAGACCGACACAAAAGTCAAAGGGTACGAGGGAGAAAGTGTCTTCTTCTTCCCCGGAGCTCTGGAGGCAGCTGCATTGGCACTGATGTTCTTCGCTTTGATCGCTGTTCTTACACAATATTCCCCCATCCACTGCCATTGCGTCCCGTCCCCTCACCCGTTGTAAAGGGGGAGCTGCGAATAAGCTTGATATACAGAGGTAAGAAACGAGGAAGAAAATGAAGAAAAGCATAAGACGAAAAATGAAGAAGAAGATGAAGAAGATGAAGACTCTCCGGTGAGGCTCTTGCTCTCCTGACTGACTGTGACTGACTTTACACAATATTTGTCGAGATGAAAACAAAAACTACGTGAATTGGGAGGAAAGTGAAAAAAACCGAGGAGTGGGCGAGATTGGTGCGGTGGTTGGCCCTAGGTGAGAGTGATTTCCACGAGTGGCAGTGTGGGGGCAATTGACAAAGTTCATATTTTAAGAATCAAAATCTAGATGTGGTTTATGATATTCAAGATAGTGAATTAAAAGAAGGAAGATACAGTACTGGTCAATAAGATGGAGAAAAACCAATTATTCGTTGATTTTCAAAAGTCTGGAGTTCGGCTGTAAAGT</canonical>
            <polymorphic>AAAATATTTTTGAGGTTATGGTTAACATTTTATCAGTTTACCACTTTTTGGTATCTTTCACAGTAAATGAGATATATTGGCTCAAAGTTAACCATTTGGAAAGTAGTCTATTTGTGTTTAATTTGTGAAAAAGTAATAACCTCAGTTCTGTCGAATCCATCATACTCGAGATCTGGGTATCCAAGGAACATGCATTCCAAATCCTCGTTCTTTGAAATGCCTGCACTCACGAGGCCAACCACTAGCACAAGGCTAGCAAGTTTGATCCAAGTCATTCTGAAGATTGCAACTTTTTTTGACAGAAAAAAAGACGAGAATGGAAGAGGAAAAGCATGGAGATCTTTTTGTCCAAAAAAAAAAAAGGAAAAGAAGTGACAAAAACGAAGACAGTGGGGAGACCGACACAAAAGTCAAAGGGTACGAGGGAGAAAGTGTCTTCTTCTTCCCCGGAGCTCTGGAGGCAGCTGCATTGGCACTGATGTTCTTCGCTTTGATCGCTRTTCTTACACAATATTCCCCCATCCACTGCCATTGCGTCCCGTCCCCTCACCCGTTGTAAAGGGGGAGCTGCGAATAAGCTTGATATACAGAGGTAAGAAACGAGGAAGAAAATGAAGAAAAGCATAAGACGAAAAATGAAGAAGAAGATGAAGAAGATGAAGACTCTCCGGTGAGGCTCTTGCTCTCCTGACTGACTGTGACTGACTTTACACAATATTTGTCGAGATGAAAACAAAAACTACGTGAATTGGGAGGAAAGTGAAAAAAACCGAGGAGTGGGCGAGATTGGTGCGGTGGTTGGCCCTAGGTGAGAGTGATTTCCACGAGTGGCAGTGTGGGGGCAATTGACAAAGTTCATATTTTAAGAATCAAAATCTAGATGTGGTTTATGATATTCAAGATAGTGAATTAAAAGAAGGAAGATACAGTACTGGTCAATAAGATGGAGAAAAACCAATTATTCGTTGATTTTCAAAAGTCTGGAGTTCGGCTGTAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGGAAAAGAAGTGACAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CTTACCTCTGTATATCAAGCTTATTC</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AAAGGAAAAGAAGTGACAAAAACGAAGACAGTGGGGAGACCGACACAAAAGTCAAAGGGTACGAGGGAGAAAGTGTCTTCTTCTTCCCCGGAGCTCTGGAGGCAGCTGCATTGGCACTGATGTTCTTCGCTTTGATCGCTGTTCTTACACAATATTCCCCCATCCACTGCCATTGCGTCCCGTCCCCTCACCCGTTGTAAAGGGGGAGCTGCGAATAAGCTTGATATACAGAGGTAAG</canonical_amplicon>
		<polymorphic_amplicon>AAAGGAAAAGAAGTGACAAAAACGAAGACAGTGGGGAGACCGACACAAAAGTCAAAGGGTACGAGGGAGAAAGTGTCTTCTTCTTCCCCGGAGCTCTGGAGGCAGCTGCATTGGCACTGATGTTCTTCGCTTTGATCGCTRTTCTTACACAATATTCCCCCATCCACTGCCATTGCGTCCCGTCCCCTCACCCGTTGTAAAGGGGGAGCTGCGAATAAGCTTGATATACAGAGGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7471</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>487973</contig_pos>
        <strand>+</strand>
        <context>AAGACGAGAA[A/T]GGAAGAGGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAGTCATTCTGAAGATTGCAACTTTTTTTGACAGAAAAAAAGACGAGAA</left_flank>
        <right_flank>GGAAGAGGAAAAGCATGGAGATCTTTTTGTCCAAAAAAAAAAAAGGAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACAGAAAATAAGATATATTGGCTAAAAGTTGACGGTATGGGTAAGTTTTTATAAGATTAAATACTATACGTGATGTTGAAAAATTGACAGCAAGCCCTGTAATCAAATAACCCCCTTATATTTAACTTTGAGCCTATTTACCTCGATTTCCGTTAAAGATATCAAAATGTTATCAACTAACAAAATATTTTTGAGGTTATGGTTAACATTTTATCAGTTTACCACTTTTTGGTATCTTTCACAGTAAATGAGATATATTGGCTCAAAGTTAACCATTTGGAAAGTAGTCTATTTGTGTTTAATTTGTGAAAAAGTAATAACCTCAGTTCTGTCGAATCCATCATACTCGAGATCTGGGTATCCAAGGAACATGCATTCCAAATCCTCGTTCTTTGAAATGCCTGCACTCACGAGGCCAACCACTAGCACAAGGCTAGCAAGTTTGATCCAAGTCATTCTGAAGATTGCAACTTTTTTTGACAGAAAAAAAGACGAGAATGGAAGAGGAAAAGCATGGAGATCTTTTTGTCCAAAAAAAAAAAAGGAAAAGAAGTGACAAAAACGAAGACAGTGGGGAGACCGACACAAAAGTCAAAGGGTACGAGGGAGAAAGTGTCTTCTTCTTCCCCGGAGCTCTGGAGGCAGCTGCATTGGCACTGATGTTCTTCGCTTTGATCGCTGTTCTTACACAATATTCCCCCATCCACTGCCATTGCGTCCCGTCCCCTCACCCGTTGTAAAGGGGGAGCTGCGAATAAGCTTGATATACAGAGGTAAGAAACGAGGAAGAAAATGAAGAAAAGCATAAGACGAAAAATGAAGAAGAAGATGAAGAAGATGAAGACTCTCCGGTGAGGCTCTTGCTCTCCTGACTGACTGTGACTGACTTTACACAATATTTGTCGAGATGAAAACAAAAACTACGTGAATTGGGAGGAAAGTGAAAAAAACCGAGGAGTGGGCGAGATTGGTGCGGTGGTTGGCCCTAGGTGAGAGTGA</canonical>
            <polymorphic>CACAGAAAATAAGATATATTGGCTAAAAGTTGACGGTATGGGTAAGTTTTTATAAGATTAAATACTATACGTGATGTTGAAAAATTGACAGCAAGCCCTGTAATCAAATAACCCCCTTATATTTAACTTTGAGCCTATTTACCTCGATTTCCGTTAAAGATATCAAAATGTTATCAACTAACAAAATATTTTTGAGGTTATGGTTAACATTTTATCAGTTTACCACTTTTTGGTATCTTTCACAGTAAATGAGATATATTGGCTCAAAGTTAACCATTTGGAAAGTAGTCTATTTGTGTTTAATTTGTGAAAAAGTAATAACCTCAGTTCTGTCGAATCCATCATACTCGAGATCTGGGTATCCAAGGAACATGCATTCCAAATCCTCGTTCTTTGAAATGCCTGCACTCACGAGGCCAACCACTAGCACAAGGCTAGCAAGTTTGATCCAAGTCATTCTGAAGATTGCAACTTTTTTTGACAGAAAAAAAGACGAGAAWGGAAGAGGAAAAGCATGGAGATCTTTTTGTCCAAAAAAAAAAAAGGAAAAGAAGTGACAAAAACGAAGACAGTGGGGAGACCGACACAAAAGTCAAAGGGTACGAGGGAGAAAGTGTCTTCTTCTTCCCCGGAGCTCTGGAGGCAGCTGCATTGGCACTGATGTTCTTCGCTTTGATCGCTGTTCTTACACAATATTCCCCCATCCACTGCCATTGCGTCCCGTCCCCTCACCCGTTGTAAAGGGGGAGCTGCGAATAAGCTTGATATACAGAGGTAAGAAACGAGGAAGAAAATGAAGAAAAGCATAAGACGAAAAATGAAGAAGAAGATGAAGAAGATGAAGACTCTCCGGTGAGGCTCTTGCTCTCCTGACTGACTGTGACTGACTTTACACAATATTTGTCGAGATGAAAACAAAAACTACGTGAATTGGGAGGAAAGTGAAAAAAACCGAGGAGTGGGCGAGATTGGTGCGGTGGTTGGCCCTAGGTGAGAGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAACCTCAGTTCTGTCGAATC</pcr_primer_p1>
		<pcr_primer_p2>CTTCGTTTTTGTCACTTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATAACCTCAGTTCTGTCGAATCCATCATACTCGAGATCTGGGTATCCAAGGAACATGCATTCCAAATCCTCGTTCTTTGAAATGCCTGCACTCACGAGGCCAACCACTAGCACAAGGCTAGCAAGTTTGATCCAAGTCATTCTGAAGATTGCAACTTTTTTTGACAGAAAAAAAGACGAGAATGGAAGAGGAAAAGCATGGAGATCTTTTTGTCCAAAAAAAAAAAAGGAAAAGAAGTGACAAAAACGAAG</canonical_amplicon>
		<polymorphic_amplicon>ATAACCTCAGTTCTGTCGAATCCATCATACTCGAGATCTGGGTATCCAAGGAACATGCATTCCAAATCCTCGTTCTTTGAAATGCCTGCACTCACGAGGCCAACCACTAGCACAAGGCTAGCAAGTTTGATCCAAGTCATTCTGAAGATTGCAACTTTTTTTGACAGAAAAAAAGACGAGAAWGGAAGAGGAAAAGCATGGAGATCTTTTTGTCCAAAAAAAAAAAAGGAAAAGAAGTGACAAAAACGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7472</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>617299</contig_pos>
        <strand>+</strand>
        <context>ATCTGGAAAA[G/T]CTACAAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGCATTTCAAATTTTAAATTATGATTCTAAAAATCTGGAAATCTGGAAAA</left_flank>
        <right_flank>CTACAAAAATTCTGAAACATATAAGTTTAAAAAACTCATATTGGAACTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCGTTTGGACCATTTTCAGGAGATCTGTCAAGCTGCTGTCAAGTTGCCGATTACGTTGAAAAATTTGGAGAGTGTAAAACAGACCTAGAGGAAAAACTTTGAATTAACACAATTTTTTTTTGAAATTCCCAGCTTTTCAGCTATGTGCCGATTTCTTAAGAAAACTTTTTTCAGGTTTCTTTACAAAAACAGGTAAAAAGGGGGCATTTCAGAAATGGACGAATAGCTGAAAAACTAGGATGTTGCGAAAATTTCTGTAAATGCAAAATTTGCAATATATACATATTCTACCCACTCCAAAGTTTTCATAATAATTGGAAACTTGACAGTCGAGCTCCAGGCTTCTAAATAATGATCATAATGGCCAAAACTCAACTAAAAACACATTTTTGTATCTCTAAATACACGAATCTTCTGAAAATTTTTAAATGCTAACAATCAAAAATCAAGCATTTCAAATTTTAAATTATGATTCTAAAAATCTGGAAATCTGGAAAATCTACAAAAATTCTGAAACATATAAGTTTAAAAAACTCATATTGGAACTTGGATGTTAAAATCTGTGAATCTAGAATCTTAGAAATCCTTTTTTTTCATTTTGGAAGTATTGAAGATTTCGAAAATCTCAAAATCTAGAAAATCAACAAAACACCCACACGTTTTAATGGAATTTCCATGTTTCTTAGTAACTATATGGCCAGATCAAGCAAATCGACTTTTTGCTAGCGTCCAGTATCTTTAAATTCCCTCCAAATGAAAATAATCGGACCCATAATTTGGTGGGTACCAAAATGCGGGGGTATGAAGTTCAAATAAATTTTTCTGAGTAGTTTACATCCCCGAACTGAGAATTTCGCACCTTCTAAATTGCTTGACTCTGAAATGACTCTTAAATGCTTTTACTCTCCGAATTATTCGCCAAAGAATCGTCCCAACGCTCTAAGGGAAACCCCTGAATAAGATTTGCAAAATTTATTATAAGAAAAAAATAGCGGAAAT</canonical>
            <polymorphic>GTCGTTTGGACCATTTTCAGGAGATCTGTCAAGCTGCTGTCAAGTTGCCGATTACGTTGAAAAATTTGGAGAGTGTAAAACAGACCTAGAGGAAAAACTTTGAATTAACACAATTTTTTTTTGAAATTCCCAGCTTTTCAGCTATGTGCCGATTTCTTAAGAAAACTTTTTTCAGGTTTCTTTACAAAAACAGGTAAAAAGGGGGCATTTCAGAAATGGACGAATAGCTGAAAAACTAGGATGTTGCGAAAATTTCTGTAAATGCAAAATTTGCAATATATACATATTCTACCCACTCCAAAGTTTTCATAATAATTGGAAACTTGACAGTCGAGCTCCAGGCTTCTAAATAATGATCATAATGGCCAAAACTCAACTAAAAACACATTTTTGTATCTCTAAATACACGAATCTTCTGAAAATTTTTAAATGCTAACAATCAAAAATCAAGCATTTCAAATTTTAAATTATGATTCTAAAAATCTGGAAATCTGGAAAAKCTACAAAAATTCTGAAACATATAAGTTTAAAAAACTCATATTGGAACTTGGATGTTAAAATCTGTGAATCTAGAATCTTAGAAATCCTTTTTTTTCATTTTGGAAGTATTGAAGATTTCGAAAATCTCAAAATCTAGAAAATCAACAAAACACCCACACGTTTTAATGGAATTTCCATGTTTCTTAGTAACTATATGGCCAGATCAAGCAAATCGACTTTTTGCTAGCGTCCAGTATCTTTAAATTCCCTCCAAATGAAAATAATCGGACCCATAATTTGGTGGGTACCAAAATGCGGGGGTATGAAGTTCAAATAAATTTTTCTGAGTAGTTTACATCCCCGAACTGAGAATTTCGCACCTTCTAAATTGCTTGACTCTGAAATGACTCTTAAATGCTTTTACTCTCCGAATTATTCGCCAAAGAATCGTCCCAACGCTCTAAGGGAAACCCCTGAATAAGATTTGCAAAATTTATTATAAGAAAAAAATAGCGGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGCTAACAATCAAAAATCAAG</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCCATTAAAACGTGTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATGCTAACAATCAAAAATCAAGCATTTCAAATTTTAAATTATGATTCTAAAAATCTGGAAATCTGGAAAATCTACAAAAATTCTGAAACATATAAGTTTAAAAAACTCATATTGGAACTTGGATGTTAAAATCTGTGAATCTAGAATCTTAGAAATCCTTTTTTTTCATTTTGGAAGTATTGAAGATTTCGAAAATCTCAAAATCTAGAAAATCAACAAAACACCCACACGTTTTAATGGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>AATGCTAACAATCAAAAATCAAGCATTTCAAATTTTAAATTATGATTCTAAAAATCTGGAAATCTGGAAAAKCTACAAAAATTCTGAAACATATAAGTTTAAAAAACTCATATTGGAACTTGGATGTTAAAATCTGTGAATCTAGAATCTTAGAAATCCTTTTTTTTCATTTTGGAAGTATTGAAGATTTCGAAAATCTCAAAATCTAGAAAATCAACAAAACACCCACACGTTTTAATGGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7474</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>617407</contig_pos>
        <strand></strand>
        <context>TTTTGGAAGT[A/T]TTGAAGATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATCTGTGAATCTAGAATCTTAGAAATCCTTTTTTTTCATTTTGGAAGT</left_flank>
        <right_flank>TTGAAGATTTCGAAAATCTCAAAATCTAGAAAATCAACAAAACACCCACA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACAATTTTTTTTTGAAATTCCCAGCTTTTCAGCTATGTGCCGATTTCTTAAGAAAACTTTTTTCAGGTTTCTTTACAAAAACAGGTAAAAAGGGGGCATTTCAGAAATGGACGAATAGCTGAAAAACTAGGATGTTGCGAAAATTTCTGTAAATGCAAAATTTGCAATATATACATATTCTACCCACTCCAAAGTTTTCATAATAATTGGAAACTTGACAGTCGAGCTCCAGGCTTCTAAATAATGATCATAATGGCCAAAACTCAACTAAAAACACATTTTTGTATCTCTAAATACACGAATCTTCTGAAAATTTTTAAATGCTAACAATCAAAAATCAAGCATTTCAAATTTTAAATTATGATTCTAAAAATCTGGAAATCTGGAAAATCTACAAAAATTCTGAAACATATAAGTTTAAAAAACTCATATTGGAACTTGGATGTTAAAATCTGTGAATCTAGAATCTTAGAAATCCTTTTTTTTCATTTTGGAAGTATTGAAGATTTCGAAAATCTCAAAATCTAGAAAATCAACAAAACACCCACACGTTTTAATGGAATTTCCATGTTTCTTAGTAACTATATGGCCAGATCAAGCAAATCGACTTTTTGCTAGCGTCCAGTATCTTTAAATTCCCTCCAAATGAAAATAATCGGACCCATAATTTGGTGGGTACCAAAATGCGGGGGTATGAAGTTCAAATAAATTTTTCTGAGTAGTTTACATCCCCGAACTGAGAATTTCGCACCTTCTAAATTGCTTGACTCTGAAATGACTCTTAAATGCTTTTACTCTCCGAATTATTCGCCAAAGAATCGTCCCAACGCTCTAAGGGAAACCCCTGAATAAGATTTGCAAAATTTATTATAAGAAAAAAATAGCGGAAATGATGAGTGCAAATTTTGACAGACTTCCTGGTCTTTTACACCTGCAAACTTCTTCCTGAAGAAAACATCATTGCAGACAGCATTAGCCACCCTCTGACTTTCTGGAAAT</canonical>
            <polymorphic>CACAATTTTTTTTTGAAATTCCCAGCTTTTCAGCTATGTGCCGATTTCTTAAGAAAACTTTTTTCAGGTTTCTTTACAAAAACAGGTAAAAAGGGGGCATTTCAGAAATGGACGAATAGCTGAAAAACTAGGATGTTGCGAAAATTTCTGTAAATGCAAAATTTGCAATATATACATATTCTACCCACTCCAAAGTTTTCATAATAATTGGAAACTTGACAGTCGAGCTCCAGGCTTCTAAATAATGATCATAATGGCCAAAACTCAACTAAAAACACATTTTTGTATCTCTAAATACACGAATCTTCTGAAAATTTTTAAATGCTAACAATCAAAAATCAAGCATTTCAAATTTTAAATTATGATTCTAAAAATCTGGAAATCTGGAAAATCTACAAAAATTCTGAAACATATAAGTTTAAAAAACTCATATTGGAACTTGGATGTTAAAATCTGTGAATCTAGAATCTTAGAAATCCTTTTTTTTCATTTTGGAAGTWTTGAAGATTTCGAAAATCTCAAAATCTAGAAAATCAACAAAACACCCACACGTTTTAATGGAATTTCCATGTTTCTTAGTAACTATATGGCCAGATCAAGCAAATCGACTTTTTGCTAGCGTCCAGTATCTTTAAATTCCCTCCAAATGAAAATAATCGGACCCATAATTTGGTGGGTACCAAAATGCGGGGGTATGAAGTTCAAATAAATTTTTCTGAGTAGTTTACATCCCCGAACTGAGAATTTCGCACCTTCTAAATTGCTTGACTCTGAAATGACTCTTAAATGCTTTTACTCTCCGAATTATTCGCCAAAGAATCGTCCCAACGCTCTAAGGGAAACCCCTGAATAAGATTTGCAAAATTTATTATAAGAAAAAAATAGCGGAAATGATGAGTGCAAATTTTGACAGACTTCCTGGTCTTTTACACCTGCAAACTTCTTCCTGAAGAAAACATCATTGCAGACAGCATTAGCCACCCTCTGACTTTCTGGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTTGGATGTTAAAATCTGTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTGGTACCCACCAAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACTTGGATGTTAAAATCTGTGAATCTAGAATCTTAGAAATCCTTTTTTTTCATTTTGGAAGTATTGAAGATTTCGAAAATCTCAAAATCTAGAAAATCAACAAAACACCCACACGTTTTAATGGAATTTCCATGTTTCTTAGTAACTATATGGCCAGATCAAGCAAATCGACTTTTTGCTAGCGTCCAGTATCTTTAAATTCCCTCCAAATGAAAATAATCGGACCCATAATTTGGTGGGTACCAAAA</canonical_amplicon>
		<polymorphic_amplicon>AACTTGGATGTTAAAATCTGTGAATCTAGAATCTTAGAAATCCTTTTTTTTCATTTTGGAAGTWTTGAAGATTTCGAAAATCTCAAAATCTAGAAAATCAACAAAACACCCACACGTTTTAATGGAATTTCCATGTTTCTTAGTAACTATATGGCCAGATCAAGCAAATCGACTTTTTGCTAGCGTCCAGTATCTTTAAATTCCCTCCAAATGAAAATAATCGGACCCATAATTTGGTGGGTACCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7475</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>700090</contig_pos>
        <strand>+</strand>
        <context>AACAACAAGA[A/G]AAATGGTAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGA</left_flank>
        <right_flank>AAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGCCGGGCCTTCAACGATTTTTGCAAGTATGACCAAAACTGAACCCGGAACCTTCCGCACCAAACTGCGCCGGAGGCGCGGCAAACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGCAGTTACGTTTCCAACCATCACAAACTGATAATTCAAGAGTGCCGAGATCGTGCCACAACTATTTCAATGTATATGACAGTAGGTGAGAGTTTATATTGATTAAAATTCACTTTTCATTAAATTCAATAGGTTGTGAACCACTAGCCGCTCCTCGAAAACCAGTTGACAATGGAGATTTTCCCACAAGTTGGAAAAAGGAATGCGCTGAAAAATTGAATAACTTTGTTGACATTATAAATGAG</canonical>
            <polymorphic>GGGCCGGGCCTTCAACGATTTTTGCAAGTATGACCAAAACTGAACCCGGAACCTTCCGCACCAAACTGCGCCGGAGGCGCGGCAAACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGARAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGCAGTTACGTTTCCAACCATCACAAACTGATAATTCAAGAGTGCCGAGATCGTGCCACAACTATTTCAATGTATATGACAGTAGGTGAGAGTTTATATTGATTAAAATTCACTTTTCATTAAATTCAATAGGTTGTGAACCACTAGCCGCTCCTCGAAAACCAGTTGACAATGGAGATTTTCCCACAAGTTGGAAAAAGGAATGCGCTGAAAAATTGAATAACTTTGTTGACATTATAAATGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGATGGCTGGTAAACTAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CTGTGGAGCGTTGTTATCAT</pcr_primer_p2>
		<pcr_amplicon_size>579</pcr_amplicon_size>
		<canonical_amplicon>CAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAG</canonical_amplicon>
		<polymorphic_amplicon>CAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGARAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7476</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>700123</contig_pos>
        <strand>+</strand>
        <context>ATCTTAACTG[A/T]TCTAMTGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTG</left_flank>
        <right_flank>TCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAAACTGAACCCGGAACCTTCCGCACCAAACTGCGCCGGAGGCGCGGCAAACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGCAGTTACGTTTCCAACCATCACAAACTGATAATTCAAGAGTGCCGAGATCGTGCCACAACTATTTCAATGTATATGACAGTAGGTGAGAGTTTATATTGATTAAAATTCACTTTTCATTAAATTCAATAGGTTGTGAACCACTAGCCGCTCCTCGAAAACCAGTTGACAATGGAGATTTTCCCACAAGTTGGAAAAAGGAATGCGCTGAAAAATTGAATAACTTTGTTGACATTATAAATGAGACGCAAACAGATGACGCATTCATTCTGACAAGG</canonical>
            <polymorphic>CCAAAACTGAACCCGGAACCTTCCGCACCAAACTGCGCCGGAGGCGCGGCAAACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGWTCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGCAGTTACGTTTCCAACCATCACAAACTGATAATTCAAGAGTGCCGAGATCGTGCCACAACTATTTCAATGTATATGACAGTAGGTGAGAGTTTATATTGATTAAAATTCACTTTTCATTAAATTCAATAGGTTGTGAACCACTAGCCGCTCCTCGAAAACCAGTTGACAATGGAGATTTTCCCACAAGTTGGAAAAAGGAATGCGCTGAAAAATTGAATAACTTTGTTGACATTATAAATGAGACGCAAACAGATGACGCATTCATTCTGACAAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>498 272 230</canonical_bands>
                <polymorphic_bands>770 230</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGATGGCTGGTAAACTAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CTGTGGAGCGTTGTTATCAT</pcr_primer_p2>
		<pcr_amplicon_size>579</pcr_amplicon_size>
		<canonical_amplicon>CAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAG</canonical_amplicon>
		<polymorphic_amplicon>CAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGWTCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7477</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>700128</contig_pos>
        <strand>+</strand>
        <context>AACTGWTCTA[A/C]TGAATATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTA</left_flank>
        <right_flank>TGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGAACCCGGAACCTTCCGCACCAAACTGCGCCGGAGGCGCGGCAAACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGCAGTTACGTTTCCAACCATCACAAACTGATAATTCAAGAGTGCCGAGATCGTGCCACAACTATTTCAATGTATATGACAGTAGGTGAGAGTTTATATTGATTAAAATTCACTTTTCATTAAATTCAATAGGTTGTGAACCACTAGCCGCTCCTCGAAAACCAGTTGACAATGGAGATTTTCCCACAAGTTGGAAAAAGGAATGCGCTGAAAAATTGAATAACTTTGTTGACATTATAAATGAGACGCAAACAGATGACGCATTCATTCTGACAAGGCAAAA</canonical>
            <polymorphic>ACTGAACCCGGAACCTTCCGCACCAAACTGCGCCGGAGGCGCGGCAAACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTAMTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGCAGTTACGTTTCCAACCATCACAAACTGATAATTCAAGAGTGCCGAGATCGTGCCACAACTATTTCAATGTATATGACAGTAGGTGAGAGTTTATATTGATTAAAATTCACTTTTCATTAAATTCAATAGGTTGTGAACCACTAGCCGCTCCTCGAAAACCAGTTGACAATGGAGATTTTCCCACAAGTTGGAAAAAGGAATGCGCTGAAAAATTGAATAACTTTGTTGACATTATAAATGAGACGCAAACAGATGACGCATTCATTCTGACAAGGCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGATGGCTGGTAAACTAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CTGTGGAGCGTTGTTATCAT</pcr_primer_p2>
		<pcr_amplicon_size>579</pcr_amplicon_size>
		<canonical_amplicon>CAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAG</canonical_amplicon>
		<polymorphic_amplicon>CAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTAMTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7479</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>700184</contig_pos>
        <strand>+</strand>
        <context>AATCTTTCTT[C/T]GRATGGAGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTT</left_flank>
        <right_flank>GGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATC</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGCAGTTACGTTTCCAACCATCACAAACTGATAATTCAAGAGTGCCGAGATCGTGCCACAACTATTTCAATGTATATGACAGTAGGTGAGAGTTTATATTGATTAAAATTCACTTTTCATTAAATTCAATAGGTTGTGAACCACTAGCCGCTCCTCGAAAACCAGTTGACAATGGAGATTTTCCCACAAGTTGGAAAAAGGAATGCGCTGAAAAATTGAATAACTTTGTTGACATTATAAATGAGACGCAAACAGATGACGCATTCATTCTGACAAGGCAAAAATACGATTTTTACAAGACAAGGTTTTATCTATATATTCCAGATGGTTTGCTGTTGC</canonical>
            <polymorphic>TGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTYGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGCAGTTACGTTTCCAACCATCACAAACTGATAATTCAAGAGTGCCGAGATCGTGCCACAACTATTTCAATGTATATGACAGTAGGTGAGAGTTTATATTGATTAAAATTCACTTTTCATTAAATTCAATAGGTTGTGAACCACTAGCCGCTCCTCGAAAACCAGTTGACAATGGAGATTTTCCCACAAGTTGGAAAAAGGAATGCGCTGAAAAATTGAATAACTTTGTTGACATTATAAATGAGACGCAAACAGATGACGCATTCATTCTGACAAGGCAAAAATACGATTTTTACAAGACAAGGTTTTATCTATATATTCCAGATGGTTTGCTGTTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>273 253 145 124 102 68 22 13</canonical_bands>
                <polymorphic_bands>273 253 145 137 102 68 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTAAAACGCAAAAGTTTATCT</pcr_primer_p1>
		<pcr_primer_p2>CGAGAAAAGCAATTTTATATTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCG</canonical_amplicon>
		<polymorphic_amplicon>GGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTYGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7480</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>700186</contig_pos>
        <strand>+</strand>
        <context>TCTTTCTTYG[A/G]ATGGAGTCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCG</left_flank>
        <right_flank>ATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGCAGTTACGTTTCCAACCATCACAAACTGATAATTCAAGAGTGCCGAGATCGTGCCACAACTATTTCAATGTATATGACAGTAGGTGAGAGTTTATATTGATTAAAATTCACTTTTCATTAAATTCAATAGGTTGTGAACCACTAGCCGCTCCTCGAAAACCAGTTGACAATGGAGATTTTCCCACAAGTTGGAAAAAGGAATGCGCTGAAAAATTGAATAACTTTGTTGACATTATAAATGAGACGCAAACAGATGACGCATTCATTCTGACAAGGCAAAAATACGATTTTTACAAGACAAGGTTTTATCTATATATTCCAGATGGTTTGCTGTTGCGG</canonical>
            <polymorphic>GTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGRATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGCAGTTACGTTTCCAACCATCACAAACTGATAATTCAAGAGTGCCGAGATCGTGCCACAACTATTTCAATGTATATGACAGTAGGTGAGAGTTTATATTGATTAAAATTCACTTTTCATTAAATTCAATAGGTTGTGAACCACTAGCCGCTCCTCGAAAACCAGTTGACAATGGAGATTTTCCCACAAGTTGGAAAAAGGAATGCGCTGAAAAATTGAATAACTTTGTTGACATTATAAATGAGACGCAAACAGATGACGCATTCATTCTGACAAGGCAAAAATACGATTTTTACAAGACAAGGTTTTATCTATATATTCCAGATGGTTTGCTGTTGCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>273 253 145 124 102 70 20 13</canonical_bands>
                <polymorphic_bands>273 253 145 137 102 70 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTAAAACGCAAAAGTTTATCT</pcr_primer_p1>
		<pcr_primer_p2>CGAGAAAAGCAATTTTATATTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCG</canonical_amplicon>
		<polymorphic_amplicon>GGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGRATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7481</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>700202</contig_pos>
        <strand>+</strand>
        <context>GTCTTCAGAC[A/G]ATGCTGRACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGAC</left_flank>
        <right_flank>ATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGCAGTTACGTTTCCAACCATCACAAACTGATAATTCAAGAGTGCCGAGATCGTGCCACAACTATTTCAATGTATATGACAGTAGGTGAGAGTTTATATTGATTAAAATTCACTTTTCATTAAATTCAATAGGTTGTGAACCACTAGCCGCTCCTCGAAAACCAGTTGACAATGGAGATTTTCCCACAAGTTGGAAAAAGGAATGCGCTGAAAAATTGAATAACTTTGTTGACATTATAAATGAGACGCAAACAGATGACGCATTCATTCTGACAAGGCAAAAATACGATTTTTACAAGACAAGGTTTTATCTATATATTCCAGATGGTTTGCTGTTGCGGAACCCTATGAAAATGA</canonical>
            <polymorphic>GTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACRATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGCAGTTACGTTTCCAACCATCACAAACTGATAATTCAAGAGTGCCGAGATCGTGCCACAACTATTTCAATGTATATGACAGTAGGTGAGAGTTTATATTGATTAAAATTCACTTTTCATTAAATTCAATAGGTTGTGAACCACTAGCCGCTCCTCGAAAACCAGTTGACAATGGAGATTTTCCCACAAGTTGGAAAAAGGAATGCGCTGAAAAATTGAATAACTTTGTTGACATTATAAATGAGACGCAAACAGATGACGCATTCATTCTGACAAGGCAAAAATACGATTTTTACAAGACAAGGTTTTATCTATATATTCCAGATGGTTTGCTGTTGCGGAACCCTATGAAAATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTAAAACGCAAAAGTTTATCT</pcr_primer_p1>
		<pcr_primer_p2>CGAGAAAAGCAATTTTATATTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCG</canonical_amplicon>
		<polymorphic_amplicon>GGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACRATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7482</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>702155</contig_pos>
        <strand>+</strand>
        <context>TATCAGGGGT[A/T]GCTAACTAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAGCTCAAAAGGAAAAGTACTGTAGAGGAATGATGAAATATCAGGGGT</left_flank>
        <right_flank>GCTAACTAAGGGGACCCGTTTAGAAAACGGTGAACGTTAGTAGGTTTAGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTTTTTTATTCAGATGTATCGAACATGCGAACCTCAATCGGAAATATTTAAAAATGGCATTCTAGACCTTATACATAAGCCGTTTTTAAAAATATTCTCTGCAATTCATCAAAAAAAGGGATGTTGCTTACAAACAACCTGAAACACTCATCAACTCATCCATTTCAGTTTCATTACTTTACGCAATCAATCTTTACCCTTTTTCTCGCTTTTTCTAAAAATTTTCATATTTACAATCACTAAATTTCGTTGACAGTGGCCGTTTGGGCAATAGATTGATAACAGCTTATCAGTGTTTCGAAACATTGAAAGTGAAACAGGCGCAGAGCCATAACAGTCTATTGTTTTGGAGCATTTAAAAATGATGACGAATAAATATAATATGTACACTTTATTGAAAGAAACACGACACCTTCAAGAACATTCTTGACGATTCTGTACAGAAAAAAAGCTCAAAAGGAAAAGTACTGTAGAGGAATGATGAAATATCAGGGGTTGCTAACTAAGGGGACCCGTTTAGAAAACGGTGAACGTTAGTAGGTTTAGGATAATATGCATAAATTTTTGTGAGTTTAGAATGGTCCGTTTTCCTTAGCCGATGCATTCTTTTGCTTCCGGAAAGAACGACTTCTGACCCATTCGTTGATGTATGACAGCACATTTTTCTTCTTCGATCTCGTAGAAGAGGATGATGATGTGTCCGAAATAGACGGTGCAACCCGCGGGAACTCCTCTTCCGATGCCTCGTGAATCGTCTAAAAATAAATAATCCATGATGCTGATAGTTGAAAAGCCATAATTCAATTGACTCTAGCATTCCACGACATGGGTCACGAGTTCGGTCATTAACCAGAGTTTCTGTACACGTACCGTGATTGGAGCAATGACGGGTGCCTGATGTGCGCCGGTTGTAAATTCTTGTGCCCTCCCGAGGCCAGTGTCGTCCTCGGTTTCTTCCTCGTCCATTTCGGTGATTGCAGGGCAACGAGAGGCCAGA</canonical>
            <polymorphic>GATTTTTTTTATTCAGATGTATCGAACATGCGAACCTCAATCGGAAATATTTAAAAATGGCATTCTAGACCTTATACATAAGCCGTTTTTAAAAATATTCTCTGCAATTCATCAAAAAAAGGGATGTTGCTTACAAACAACCTGAAACACTCATCAACTCATCCATTTCAGTTTCATTACTTTACGCAATCAATCTTTACCCTTTTTCTCGCTTTTTCTAAAAATTTTCATATTTACAATCACTAAATTTCGTTGACAGTGGCCGTTTGGGCAATAGATTGATAACAGCTTATCAGTGTTTCGAAACATTGAAAGTGAAACAGGCGCAGAGCCATAACAGTCTATTGTTTTGGAGCATTTAAAAATGATGACGAATAAATATAATATGTACACTTTATTGAAAGAAACACGACACCTTCAAGAACATTCTTGACGATTCTGTACAGAAAAAAAGCTCAAAAGGAAAAGTACTGTAGAGGAATGATGAAATATCAGGGGTWGCTAACTAAGGGGACCCGTTTAGAAAACGGTGAACGTTAGTAGGTTTAGGATAATATGCATAAATTTTTGTGAGTTTAGAATGGTCCGTTTTCCTTAGCCGATGCATTCTTTTGCTTCCGGAAAGAACGACTTCTGACCCATTCGTTGATGTATGACAGCACATTTTTCTTCTTCGATCTCGTAGAAGAGGATGATGATGTGTCCGAAATAGACGGTGCAACCCGCGGGAACTCCTCTTCCGATGCCTCGTGAATCGTCTAAAAATAAATAATCCATGATGCTGATAGTTGAAAAGCCATAATTCAATTGACTCTAGCATTCCACGACATGGGTCACGAGTTCGGTCATTAACCAGAGTTTCTGTACACGTACCGTGATTGGAGCAATGACGGGTGCCTGATGTGCGCCGGTTGTAAATTCTTGTGCCCTCCCGAGGCCAGTGTCGTCCTCGGTTTCTTCCTCGTCCATTTCGGTGATTGCAGGGCAACGAGAGGCCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAACATTCTTGACGATTCTGTA</pcr_primer_p1>
		<pcr_primer_p2>AGAAGAAAAATGTGCTGTCATAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AGAACATTCTTGACGATTCTGTACAGAAAAAAAGCTCAAAAGGAAAAGTACTGTAGAGGAATGATGAAATATCAGGGGTTGCTAACTAAGGGGACCCGTTTAGAAAACGGTGAACGTTAGTAGGTTTAGGATAATATGCATAAATTTTTGTGAGTTTAGAATGGTCCGTTTTCCTTAGCCGATGCATTCTTTTGCTTCCGGAAAGAACGACTTCTGACCCATTCGTTGATGTATGACAGCACATTTTTCTTCT</canonical_amplicon>
		<polymorphic_amplicon>AGAACATTCTTGACGATTCTGTACAGAAAAAAAGCTCAAAAGGAAAAGTACTGTAGAGGAATGATGAAATATCAGGGGTWGCTAACTAAGGGGACCCGTTTAGAAAACGGTGAACGTTAGTAGGTTTAGGATAATATGCATAAATTTTTGTGAGTTTAGAATGGTCCGTTTTCCTTAGCCGATGCATTCTTTTGCTTCCGGAAAGAACGACTTCTGACCCATTCGTTGATGTATGACAGCACATTTTTCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7483</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>702014</contig_pos>
        <strand>+</strand>
        <context>TTTGGAGCAT[A/T]TAAAAATGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGAAAGTGAAACAGGCGCAGAGCCATAACAGTCTATTGTTTTGGAGCAT</left_flank>
        <right_flank>TAAAAATGATGACGAATAAATATAATATGTACACTTTATTGAAAGAAACA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGGAATTTTCCAATTTTGAAGTTTCTGGAACTTTGGAACATTTCGGATTTTTTTTGAAGTTCAATTTTTCAAACTAGTGAGTTTGCTTTTTTAAACTAGTAAAAACAATCAACGACGAAAACAGAATTATAAACTTTAGGATTTTTTTTATTCAGATGTATCGAACATGCGAACCTCAATCGGAAATATTTAAAAATGGCATTCTAGACCTTATACATAAGCCGTTTTTAAAAATATTCTCTGCAATTCATCAAAAAAAGGGATGTTGCTTACAAACAACCTGAAACACTCATCAACTCATCCATTTCAGTTTCATTACTTTACGCAATCAATCTTTACCCTTTTTCTCGCTTTTTCTAAAAATTTTCATATTTACAATCACTAAATTTCGTTGACAGTGGCCGTTTGGGCAATAGATTGATAACAGCTTATCAGTGTTTCGAAACATTGAAAGTGAAACAGGCGCAGAGCCATAACAGTCTATTGTTTTGGAGCATTTAAAAATGATGACGAATAAATATAATATGTACACTTTATTGAAAGAAACACGACACCTTCAAGAACATTCTTGACGATTCTGTACAGAAAAAAAGCTCAAAAGGAAAAGTACTGTAGAGGAATGATGAAATATCAGGGGTTGCTAACTAAGGGGACCCGTTTAGAAAACGGTGAACGTTAGTAGGTTTAGGATAATATGCATAAATTTTTGTGAGTTTAGAATGGTCCGTTTTCCTTAGCCGATGCATTCTTTTGCTTCCGGAAAGAACGACTTCTGACCCATTCGTTGATGTATGACAGCACATTTTTCTTCTTCGATCTCGTAGAAGAGGATGATGATGTGTCCGAAATAGACGGTGCAACCCGCGGGAACTCCTCTTCCGATGCCTCGTGAATCGTCTAAAAATAAATAATCCATGATGCTGATAGTTGAAAAGCCATAATTCAATTGACTCTAGCATTCCACGACATGGGTCACGAGTTCGGTCATTAACCAGAGT</canonical>
            <polymorphic>ATTGGAATTTTCCAATTTTGAAGTTTCTGGAACTTTGGAACATTTCGGATTTTTTTTGAAGTTCAATTTTTCAAACTAGTGAGTTTGCTTTTTTAAACTAGTAAAAACAATCAACGACGAAAACAGAATTATAAACTTTAGGATTTTTTTTATTCAGATGTATCGAACATGCGAACCTCAATCGGAAATATTTAAAAATGGCATTCTAGACCTTATACATAAGCCGTTTTTAAAAATATTCTCTGCAATTCATCAAAAAAAGGGATGTTGCTTACAAACAACCTGAAACACTCATCAACTCATCCATTTCAGTTTCATTACTTTACGCAATCAATCTTTACCCTTTTTCTCGCTTTTTCTAAAAATTTTCATATTTACAATCACTAAATTTCGTTGACAGTGGCCGTTTGGGCAATAGATTGATAACAGCTTATCAGTGTTTCGAAACATTGAAAGTGAAACAGGCGCAGAGCCATAACAGTCTATTGTTTTGGAGCATWTAAAAATGATGACGAATAAATATAATATGTACACTTTATTGAAAGAAACACGACACCTTCAAGAACATTCTTGACGATTCTGTACAGAAAAAAAGCTCAAAAGGAAAAGTACTGTAGAGGAATGATGAAATATCAGGGGTTGCTAACTAAGGGGACCCGTTTAGAAAACGGTGAACGTTAGTAGGTTTAGGATAATATGCATAAATTTTTGTGAGTTTAGAATGGTCCGTTTTCCTTAGCCGATGCATTCTTTTGCTTCCGGAAAGAACGACTTCTGACCCATTCGTTGATGTATGACAGCACATTTTTCTTCTTCGATCTCGTAGAAGAGGATGATGATGTGTCCGAAATAGACGGTGCAACCCGCGGGAACTCCTCTTCCGATGCCTCGTGAATCGTCTAAAAATAAATAATCCATGATGCTGATAGTTGAAAAGCCATAATTCAATTGACTCTAGCATTCCACGACATGGGTCACGAGTTCGGTCATTAACCAGAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 270 99 94 38</canonical_bands>
                <polymorphic_bands>769 99 94 38</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>490 270 99 93 38 10</canonical_bands>
                <polymorphic_bands>760 99 93 38 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTCATTACTTTACGCAATC</pcr_primer_p1>
		<pcr_primer_p2>TGTCGTGTTTCTTTCAATAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTCATTACTTTACGCAATCAATCTTTACCCTTTTTCTCGCTTTTTCTAAAAATTTTCATATTTACAATCACTAAATTTCGTTGACAGTGGCCGTTTGGGCAATAGATTGATAACAGCTTATCAGTGTTTCGAAACATTGAAAGTGAAACAGGCGCAGAGCCATAACAGTCTATTGTTTTGGAGCATTTAAAAATGATGACGAATAAATATAATATGTACACTTTATTGAAAGAAACACGACA</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTCATTACTTTACGCAATCAATCTTTACCCTTTTTCTCGCTTTTTCTAAAAATTTTCATATTTACAATCACTAAATTTCGTTGACAGTGGCCGTTTGGGCAATAGATTGATAACAGCTTATCAGTGTTTCGAAACATTGAAAGTGAAACAGGCGCAGAGCCATAACAGTCTATTGTTTTGGAGCATWTAAAAATGATGACGAATAAATATAATATGTACACTTTATTGAAAGAAACACGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7484</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>701868</contig_pos>
        <strand>+</strand>
        <context>TTTTTCTCGC[G/T]TTTTCTAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCATTTCAGTTTCATTACTTTACGCAATCAATCTTTACCCTTTTTCTCGC</left_flank>
        <right_flank>TTTTCTAAAAATTTTCATATTTACAATCACTAAATTTCGTTGACAGTGGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAGTTTCTTACATCTGGATAAATGCAGGGATTTTCGGAATGGCCTTTCAGAATATTTCGAAATATCGGAAATTCCGATTTTCAAAACTTGAGAATTTCGAAATCTTGGAATTTTCCAATTCTGAAATTTTTGGAACTTCGGAATATTGGAATTTTCCAATTTTGAAGTTTCTGGAACTTTGGAACATTTCGGATTTTTTTTGAAGTTCAATTTTTCAAACTAGTGAGTTTGCTTTTTTAAACTAGTAAAAACAATCAACGACGAAAACAGAATTATAAACTTTAGGATTTTTTTTATTCAGATGTATCGAACATGCGAACCTCAATCGGAAATATTTAAAAATGGCATTCTAGACCTTATACATAAGCCGTTTTTAAAAATATTCTCTGCAATTCATCAAAAAAAGGGATGTTGCTTACAAACAACCTGAAACACTCATCAACTCATCCATTTCAGTTTCATTACTTTACGCAATCAATCTTTACCCTTTTTCTCGCTTTTTCTAAAAATTTTCATATTTACAATCACTAAATTTCGTTGACAGTGGCCGTTTGGGCAATAGATTGATAACAGCTTATCAGTGTTTCGAAACATTGAAAGTGAAACAGGCGCAGAGCCATAACAGTCTATTGTTTTGGAGCATTTAAAAATGATGACGAATAAATATAATATGTACACTTTATTGAAAGAAACACGACACCTTCAAGAACATTCTTGACGATTCTGTACAGAAAAAAAGCTCAAAAGGAAAAGTACTGTAGAGGAATGATGAAATATCAGGGGTTGCTAACTAAGGGGACCCGTTTAGAAAACGGTGAACGTTAGTAGGTTTAGGATAATATGCATAAATTTTTGTGAGTTTAGAATGGTCCGTTTTCCTTAGCCGATGCATTCTTTTGCTTCCGGAAAGAACGACTTCTGACCCATTCGTTGATGTATGACAGCACATTTTTCTTCTTCGATCTCGTAGAAGAGGATGATGATGTGTCCGAAATAGA</canonical>
            <polymorphic>GGAAGTTTCTTACATCTGGATAAATGCAGGGATTTTCGGAATGGCCTTTCAGAATATTTCGAAATATCGGAAATTCCGATTTTCAAAACTTGAGAATTTCGAAATCTTGGAATTTTCCAATTCTGAAATTTTTGGAACTTCGGAATATTGGAATTTTCCAATTTTGAAGTTTCTGGAACTTTGGAACATTTCGGATTTTTTTTGAAGTTCAATTTTTCAAACTAGTGAGTTTGCTTTTTTAAACTAGTAAAAACAATCAACGACGAAAACAGAATTATAAACTTTAGGATTTTTTTTATTCAGATGTATCGAACATGCGAACCTCAATCGGAAATATTTAAAAATGGCATTCTAGACCTTATACATAAGCCGTTTTTAAAAATATTCTCTGCAATTCATCAAAAAAAGGGATGTTGCTTACAAACAACCTGAAACACTCATCAACTCATCCATTTCAGTTTCATTACTTTACGCAATCAATCTTTACCCTTTTTCTCGCKTTTTCTAAAAATTTTCATATTTACAATCACTAAATTTCGTTGACAGTGGCCGTTTGGGCAATAGATTGATAACAGCTTATCAGTGTTTCGAAACATTGAAAGTGAAACAGGCGCAGAGCCATAACAGTCTATTGTTTTGGAGCATTTAAAAATGATGACGAATAAATATAATATGTACACTTTATTGAAAGAAACACGACACCTTCAAGAACATTCTTGACGATTCTGTACAGAAAAAAAGCTCAAAAGGAAAAGTACTGTAGAGGAATGATGAAATATCAGGGGTTGCTAACTAAGGGGACCCGTTTAGAAAACGGTGAACGTTAGTAGGTTTAGGATAATATGCATAAATTTTTGTGAGTTTAGAATGGTCCGTTTTCCTTAGCCGATGCATTCTTTTGCTTCCGGAAAGAACGACTTCTGACCCATTCGTTGATGTATGACAGCACATTTTTCTTCTTCGATCTCGTAGAAGAGGATGATGATGTGTCCGAAATAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCCATTTCAGTTTCATTACTT</pcr_primer_p1>
		<pcr_primer_p2>TCGTGTTTCTTTCAATAAAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CATCCATTTCAGTTTCATTACTTTACGCAATCAATCTTTACCCTTTTTCTCGCTTTTTCTAAAAATTTTCATATTTACAATCACTAAATTTCGTTGACAGTGGCCGTTTGGGCAATAGATTGATAACAGCTTATCAGTGTTTCGAAACATTGAAAGTGAAACAGGCGCAGAGCCATAACAGTCTATTGTTTTGGAGCATTTAAAAATGATGACGAATAAATATAATATGTACACTTTATTGAAAGAAACACGA</canonical_amplicon>
		<polymorphic_amplicon>CATCCATTTCAGTTTCATTACTTTACGCAATCAATCTTTACCCTTTTTCTCGCKTTTTCTAAAAATTTTCATATTTACAATCACTAAATTTCGTTGACAGTGGCCGTTTGGGCAATAGATTGATAACAGCTTATCAGTGTTTCGAAACATTGAAAGTGAAACAGGCGCAGAGCCATAACAGTCTATTGTTTTGGAGCATTTAAAAATGATGACGAATAAATATAATATGTACACTTTATTGAAAGAAACACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7485</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>701785</contig_pos>
        <strand>+</strand>
        <context>AGRGATGTTG[C/T]TTACAAACAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGCCGTTTTTAAAAATATTCTCTGCAATTCATCAAAAAAAGGGATGTTG</left_flank>
        <right_flank>TTACAAACAACCTGAAACACTCATCAACTCATCCATTTCAGTTTCATTAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGTGATTACAATTTTATGTTTTTTGCTATTACCCTGGAAGTTTAGGGTCTGAAATGCCAATTTTAGATAATTCCGATTAACGGAAGTTTCTTACATCTGGATAAATGCAGGGATTTTCGGAATGGCCTTTCAGAATATTTCGAAATATCGGAAATTCCGATTTTCAAAACTTGAGAATTTCGAAATCTTGGAATTTTCCAATTCTGAAATTTTTGGAACTTCGGAATATTGGAATTTTCCAATTTTGAAGTTTCTGGAACTTTGGAACATTTCGGATTTTTTTTGAAGTTCAATTTTTCAAACTAGTGAGTTTGCTTTTTTAAACTAGTAAAAACAATCAACGACGAAAACAGAATTATAAACTTTAGGATTTTTTTTATTCAGATGTATCGAACATGCGAACCTCAATCGGAAATATTTAAAAATGGCATTCTAGACCTTATACATAAGCCGTTTTTAAAAATATTCTCTGCAATTCATCAAAAAAAGGGATGTTGCTTACAAACAACCTGAAACACTCATCAACTCATCCATTTCAGTTTCATTACTTTACGCAATCAATCTTTACCCTTTTTCTCGCTTTTTCTAAAAATTTTCATATTTACAATCACTAAATTTCGTTGACAGTGGCCGTTTGGGCAATAGATTGATAACAGCTTATCAGTGTTTCGAAACATTGAAAGTGAAACAGGCGCAGAGCCATAACAGTCTATTGTTTTGGAGCATTTAAAAATGATGACGAATAAATATAATATGTACACTTTATTGAAAGAAACACGACACCTTCAAGAACATTCTTGACGATTCTGTACAGAAAAAAAGCTCAAAAGGAAAAGTACTGTAGAGGAATGATGAAATATCAGGGGTTGCTAACTAAGGGGACCCGTTTAGAAAACGGTGAACGTTAGTAGGTTTAGGATAATATGCATAAATTTTTGTGAGTTTAGAATGGTCCGTTTTCCTTAGCCGATGCATTCTTTTGCTTCCGGAAAGAACGA</canonical>
            <polymorphic>ACAGTGATTACAATTTTATGTTTTTTGCTATTACCCTGGAAGTTTAGGGTCTGAAATGCCAATTTTAGATAATTCCGATTAACGGAAGTTTCTTACATCTGGATAAATGCAGGGATTTTCGGAATGGCCTTTCAGAATATTTCGAAATATCGGAAATTCCGATTTTCAAAACTTGAGAATTTCGAAATCTTGGAATTTTCCAATTCTGAAATTTTTGGAACTTCGGAATATTGGAATTTTCCAATTTTGAAGTTTCTGGAACTTTGGAACATTTCGGATTTTTTTTGAAGTTCAATTTTTCAAACTAGTGAGTTTGCTTTTTTAAACTAGTAAAAACAATCAACGACGAAAACAGAATTATAAACTTTAGGATTTTTTTTATTCAGATGTATCGAACATGCGAACCTCAATCGGAAATATTTAAAAATGGCATTCTAGACCTTATACATAAGCCGTTTTTAAAAATATTCTCTGCAATTCATCAAAAAAAGGGATGTTGYTTACAAACAACCTGAAACACTCATCAACTCATCCATTTCAGTTTCATTACTTTACGCAATCAATCTTTACCCTTTTTCTCGCTTTTTCTAAAAATTTTCATATTTACAATCACTAAATTTCGTTGACAGTGGCCGTTTGGGCAATAGATTGATAACAGCTTATCAGTGTTTCGAAACATTGAAAGTGAAACAGGCGCAGAGCCATAACAGTCTATTGTTTTGGAGCATTTAAAAATGATGACGAATAAATATAATATGTACACTTTATTGAAAGAAACACGACACCTTCAAGAACATTCTTGACGATTCTGTACAGAAAAAAAGCTCAAAAGGAAAAGTACTGTAGAGGAATGATGAAATATCAGGGGTTGCTAACTAAGGGGACCCGTTTAGAAAACGGTGAACGTTAGTAGGTTTAGGATAATATGCATAAATTTTTGTGAGTTTAGAATGGTCCGTTTTCCTTAGCCGATGCATTCTTTTGCTTCCGGAAAGAACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGACGAAAACAGAATTATAAAC</pcr_primer_p1>
		<pcr_primer_p2>GAGAAAAAGGGTAAAGATTGATT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>ACGACGAAAACAGAATTATAAACTTTAGGATTTTTTTTATTCAGATGTATCGAACATGCGAACCTCAATCGGAAATATTTAAAAATGGCATTCTAGACCTTATACATAAGCCGTTTTTAAAAATATTCTCTGCAATTCATCAAAAAAAGGGATGTTGCTTACAAACAACCTGAAACACTCATCAACTCATCCATTTCAGTTTCATTACTTTACGCAATCAATCTTTACCCTTTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>ACGACGAAAACAGAATTATAAACTTTAGGATTTTTTTTATTCAGATGTATCGAACATGCGAACCTCAATCGGAAATATTTAAAAATGGCATTCTAGACCTTATACATAAGCCGTTTTTAAAAATATTCTCTGCAATTCATCAAAAAAAGGGATGTTGYTTACAAACAACCTGAAACACTCATCAACTCATCCATTTCAGTTTCATTACTTTACGCAATCAATCTTTACCCTTTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7486</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>701777</contig_pos>
        <strand>+</strand>
        <context>TCAAWAAAAG[A/G]GATGTTGYTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATACATAAGCCGTTTTTAAAAATATTCTCTGCAATTCATCAAAAAAAG</left_flank>
        <right_flank>GATGTTGCTTACAAACAACCTGAAACACTCATCAACTCATCCATTTCAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTAAACAGTGATTACAATTTTATGTTTTTTGCTATTACCCTGGAAGTTTAGGGTCTGAAATGCCAATTTTAGATAATTCCGATTAACGGAAGTTTCTTACATCTGGATAAATGCAGGGATTTTCGGAATGGCCTTTCAGAATATTTCGAAATATCGGAAATTCCGATTTTCAAAACTTGAGAATTTCGAAATCTTGGAATTTTCCAATTCTGAAATTTTTGGAACTTCGGAATATTGGAATTTTCCAATTTTGAAGTTTCTGGAACTTTGGAACATTTCGGATTTTTTTTGAAGTTCAATTTTTCAAACTAGTGAGTTTGCTTTTTTAAACTAGTAAAAACAATCAACGACGAAAACAGAATTATAAACTTTAGGATTTTTTTTATTCAGATGTATCGAACATGCGAACCTCAATCGGAAATATTTAAAAATGGCATTCTAGACCTTATACATAAGCCGTTTTTAAAAATATTCTCTGCAATTCATCAAAAAAAGGGATGTTGCTTACAAACAACCTGAAACACTCATCAACTCATCCATTTCAGTTTCATTACTTTACGCAATCAATCTTTACCCTTTTTCTCGCTTTTTCTAAAAATTTTCATATTTACAATCACTAAATTTCGTTGACAGTGGCCGTTTGGGCAATAGATTGATAACAGCTTATCAGTGTTTCGAAACATTGAAAGTGAAACAGGCGCAGAGCCATAACAGTCTATTGTTTTGGAGCATTTAAAAATGATGACGAATAAATATAATATGTACACTTTATTGAAAGAAACACGACACCTTCAAGAACATTCTTGACGATTCTGTACAGAAAAAAAGCTCAAAAGGAAAAGTACTGTAGAGGAATGATGAAATATCAGGGGTTGCTAACTAAGGGGACCCGTTTAGAAAACGGTGAACGTTAGTAGGTTTAGGATAATATGCATAAATTTTTGTGAGTTTAGAATGGTCCGTTTTCCTTAGCCGATGCATTCTTTTGCTTCCGGA</canonical>
            <polymorphic>AATTTTAAACAGTGATTACAATTTTATGTTTTTTGCTATTACCCTGGAAGTTTAGGGTCTGAAATGCCAATTTTAGATAATTCCGATTAACGGAAGTTTCTTACATCTGGATAAATGCAGGGATTTTCGGAATGGCCTTTCAGAATATTTCGAAATATCGGAAATTCCGATTTTCAAAACTTGAGAATTTCGAAATCTTGGAATTTTCCAATTCTGAAATTTTTGGAACTTCGGAATATTGGAATTTTCCAATTTTGAAGTTTCTGGAACTTTGGAACATTTCGGATTTTTTTTGAAGTTCAATTTTTCAAACTAGTGAGTTTGCTTTTTTAAACTAGTAAAAACAATCAACGACGAAAACAGAATTATAAACTTTAGGATTTTTTTTATTCAGATGTATCGAACATGCGAACCTCAATCGGAAATATTTAAAAATGGCATTCTAGACCTTATACATAAGCCGTTTTTAAAAATATTCTCTGCAATTCATCAAAAAAAGRGATGTTGCTTACAAACAACCTGAAACACTCATCAACTCATCCATTTCAGTTTCATTACTTTACGCAATCAATCTTTACCCTTTTTCTCGCTTTTTCTAAAAATTTTCATATTTACAATCACTAAATTTCGTTGACAGTGGCCGTTTGGGCAATAGATTGATAACAGCTTATCAGTGTTTCGAAACATTGAAAGTGAAACAGGCGCAGAGCCATAACAGTCTATTGTTTTGGAGCATTTAAAAATGATGACGAATAAATATAATATGTACACTTTATTGAAAGAAACACGACACCTTCAAGAACATTCTTGACGATTCTGTACAGAAAAAAAGCTCAAAAGGAAAAGTACTGTAGAGGAATGATGAAATATCAGGGGTTGCTAACTAAGGGGACCCGTTTAGAAAACGGTGAACGTTAGTAGGTTTAGGATAATATGCATAAATTTTTGTGAGTTTAGAATGGTCCGTTTTCCTTAGCCGATGCATTCTTTTGCTTCCGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGACGAAAACAGAATTATAAAC</pcr_primer_p1>
		<pcr_primer_p2>GAGAAAAAGGGTAAAGATTGATT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>ACGACGAAAACAGAATTATAAACTTTAGGATTTTTTTTATTCAGATGTATCGAACATGCGAACCTCAATCGGAAATATTTAAAAATGGCATTCTAGACCTTATACATAAGCCGTTTTTAAAAATATTCTCTGCAATTCATCAAAAAAAGGGATGTTGCTTACAAACAACCTGAAACACTCATCAACTCATCCATTTCAGTTTCATTACTTTACGCAATCAATCTTTACCCTTTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>ACGACGAAAACAGAATTATAAACTTTAGGATTTTTTTTATTCAGATGTATCGAACATGCGAACCTCAATCGGAAATATTTAAAAATGGCATTCTAGACCTTATACATAAGCCGTTTTTAAAAATATTCTCTGCAATTCATCAAAAAAAGRGATGTTGCTTACAAACAACCTGAAACACTCATCAACTCATCCATTTCAGTTTCATTACTTTACGCAATCAATCTTTACCCTTTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7487</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>701771</contig_pos>
        <strand>+</strand>
        <context>AATTCATCAA[A/T]AAAAGRGATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGACCTTATACATAAGCCGTTTTTAAAAATATTCTCTGCAATTCATCAA</left_flank>
        <right_flank>AAAAGGGATGTTGCTTACAAACAACCTGAAACACTCATCAACTCATCCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATCAAATTTTAAACAGTGATTACAATTTTATGTTTTTTGCTATTACCCTGGAAGTTTAGGGTCTGAAATGCCAATTTTAGATAATTCCGATTAACGGAAGTTTCTTACATCTGGATAAATGCAGGGATTTTCGGAATGGCCTTTCAGAATATTTCGAAATATCGGAAATTCCGATTTTCAAAACTTGAGAATTTCGAAATCTTGGAATTTTCCAATTCTGAAATTTTTGGAACTTCGGAATATTGGAATTTTCCAATTTTGAAGTTTCTGGAACTTTGGAACATTTCGGATTTTTTTTGAAGTTCAATTTTTCAAACTAGTGAGTTTGCTTTTTTAAACTAGTAAAAACAATCAACGACGAAAACAGAATTATAAACTTTAGGATTTTTTTTATTCAGATGTATCGAACATGCGAACCTCAATCGGAAATATTTAAAAATGGCATTCTAGACCTTATACATAAGCCGTTTTTAAAAATATTCTCTGCAATTCATCAAAAAAAGGGATGTTGCTTACAAACAACCTGAAACACTCATCAACTCATCCATTTCAGTTTCATTACTTTACGCAATCAATCTTTACCCTTTTTCTCGCTTTTTCTAAAAATTTTCATATTTACAATCACTAAATTTCGTTGACAGTGGCCGTTTGGGCAATAGATTGATAACAGCTTATCAGTGTTTCGAAACATTGAAAGTGAAACAGGCGCAGAGCCATAACAGTCTATTGTTTTGGAGCATTTAAAAATGATGACGAATAAATATAATATGTACACTTTATTGAAAGAAACACGACACCTTCAAGAACATTCTTGACGATTCTGTACAGAAAAAAAGCTCAAAAGGAAAAGTACTGTAGAGGAATGATGAAATATCAGGGGTTGCTAACTAAGGGGACCCGTTTAGAAAACGGTGAACGTTAGTAGGTTTAGGATAATATGCATAAATTTTTGTGAGTTTAGAATGGTCCGTTTTCCTTAGCCGATGCATTCTTTTGCT</canonical>
            <polymorphic>TCATCAAATTTTAAACAGTGATTACAATTTTATGTTTTTTGCTATTACCCTGGAAGTTTAGGGTCTGAAATGCCAATTTTAGATAATTCCGATTAACGGAAGTTTCTTACATCTGGATAAATGCAGGGATTTTCGGAATGGCCTTTCAGAATATTTCGAAATATCGGAAATTCCGATTTTCAAAACTTGAGAATTTCGAAATCTTGGAATTTTCCAATTCTGAAATTTTTGGAACTTCGGAATATTGGAATTTTCCAATTTTGAAGTTTCTGGAACTTTGGAACATTTCGGATTTTTTTTGAAGTTCAATTTTTCAAACTAGTGAGTTTGCTTTTTTAAACTAGTAAAAACAATCAACGACGAAAACAGAATTATAAACTTTAGGATTTTTTTTATTCAGATGTATCGAACATGCGAACCTCAATCGGAAATATTTAAAAATGGCATTCTAGACCTTATACATAAGCCGTTTTTAAAAATATTCTCTGCAATTCATCAAWAAAAGGGATGTTGCTTACAAACAACCTGAAACACTCATCAACTCATCCATTTCAGTTTCATTACTTTACGCAATCAATCTTTACCCTTTTTCTCGCTTTTTCTAAAAATTTTCATATTTACAATCACTAAATTTCGTTGACAGTGGCCGTTTGGGCAATAGATTGATAACAGCTTATCAGTGTTTCGAAACATTGAAAGTGAAACAGGCGCAGAGCCATAACAGTCTATTGTTTTGGAGCATTTAAAAATGATGACGAATAAATATAATATGTACACTTTATTGAAAGAAACACGACACCTTCAAGAACATTCTTGACGATTCTGTACAGAAAAAAAGCTCAAAAGGAAAAGTACTGTAGAGGAATGATGAAATATCAGGGGTTGCTAACTAAGGGGACCCGTTTAGAAAACGGTGAACGTTAGTAGGTTTAGGATAATATGCATAAATTTTTGTGAGTTTAGAATGGTCCGTTTTCCTTAGCCGATGCATTCTTTTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGACGAAAACAGAATTATAAAC</pcr_primer_p1>
		<pcr_primer_p2>GAGAAAAAGGGTAAAGATTGATT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>ACGACGAAAACAGAATTATAAACTTTAGGATTTTTTTTATTCAGATGTATCGAACATGCGAACCTCAATCGGAAATATTTAAAAATGGCATTCTAGACCTTATACATAAGCCGTTTTTAAAAATATTCTCTGCAATTCATCAAAAAAAGGGATGTTGCTTACAAACAACCTGAAACACTCATCAACTCATCCATTTCAGTTTCATTACTTTACGCAATCAATCTTTACCCTTTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>ACGACGAAAACAGAATTATAAACTTTAGGATTTTTTTTATTCAGATGTATCGAACATGCGAACCTCAATCGGAAATATTTAAAAATGGCATTCTAGACCTTATACATAAGCCGTTTTTAAAAATATTCTCTGCAATTCATCAAWAAAAGGGATGTTGCTTACAAACAACCTGAAACACTCATCAACTCATCCATTTCAGTTTCATTACTTTACGCAATCAATCTTTACCCTTTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7488</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>736233</contig_pos>
        <strand>+</strand>
        <context>GCCACACAGG[C/T]ACAGYGATGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGTTATTGAAAATAACCAAGCAATATTTTGCCCTGATGTGCCACACAGG</left_flank>
        <right_flank>ACAGTGATGCAGTGGCAAACATCCCAGGGTTCGTAGGGCTCGTTCGGATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATAATTTTGATTAACTCACTCATTAATGGATTTTAGGTTGCAGAAAACCACCACACCTTTACCGACCGTGGCCACCCATTTCCGGTTTTGTTTGGGTCTCAAAAACACATTTGTGAACTTACAAGATTTTTTCAGCCAATCTCAGCCTTGGATCCATGTTCAACTCATCTCTAAAAATGCATTTTTTATTTGAAATTCAATGGAGAAGCCAAAATAACTCACTTTATATTTTCAATCGATCTCCCTGCCTTGGTCCTTTTATAGCATTTTTTCAAGTGGCTTTTAACATTTTCTTCAGCAAGATTCCAGCAGACAATCTTGTGATCGAAACCACCGCTAAATAGGGGGCGTCCATCGGGACTCCATTCCTGAAAAGGAAGATTTATAATTTCAATTTTATGGGAAAATAAAACTTACAACTGTTAGGATTTTGGACACATGAGCCGCAGGGTTATTGAAAATAACCAAGCAATATTTTGCCCTGATGTGCCACACAGGCACAGTGATGCAGTGGCAAACATCCCAGGGTTCGTAGGGCTCGTTCGGATGTTGTTGATTTCTCCTCTATTTCCTTCAATAACCTGCAAATCAACCTTTTTTTTTTAATTTGTCTAGAACTTAAAATCCTTACCCGCTCCATTTTATGACGATATAGACGACATAGATGAGACCCATGCCACTCTGTAGAGTTCGTCGTGATCCTTCTCCATTGTCGGATCCACCTGAAGAAAAATAAATTAAAATTGGAATTAGAAACTACGATAATTTTTCATTTTGAAAAAATTTTATATTTCCGTTATTGAAAAATTCCACTTCGACAGAGGTGGCCCATTTTTCAAAGTATGAACACGTAACTTTCTTCCGAAAGTTTCTTGTTTGGATATGTTCTCAGCGAGCTACAACTACCGTAAAACCTGTAATAGAAAGGCCTTGACACTGTCAACTTTGAGCTCGATTATCTCTACTCCTACCAAAGATATCAAAAATGTGTCATCTGAT</canonical>
            <polymorphic>CATAATTTTGATTAACTCACTCATTAATGGATTTTAGGTTGCAGAAAACCACCACACCTTTACCGACCGTGGCCACCCATTTCCGGTTTTGTTTGGGTCTCAAAAACACATTTGTGAACTTACAAGATTTTTTCAGCCAATCTCAGCCTTGGATCCATGTTCAACTCATCTCTAAAAATGCATTTTTTATTTGAAATTCAATGGAGAAGCCAAAATAACTCACTTTATATTTTCAATCGATCTCCCTGCCTTGGTCCTTTTATAGCATTTTTTCAAGTGGCTTTTAACATTTTCTTCAGCAAGATTCCAGCAGACAATCTTGTGATCGAAACCACCGCTAAATAGGGGGCGTCCATCGGGACTCCATTCCTGAAAAGGAAGATTTATAATTTCAATTTTATGGGAAAATAAAACTTACAACTGTTAGGATTTTGGACACATGAGCCGCAGGGTTATTGAAAATAACCAAGCAATATTTTGCCCTGATGTGCCACACAGGYACAGTGATGCAGTGGCAAACATCCCAGGGTTCGTAGGGCTCGTTCGGATGTTGTTGATTTCTCCTCTATTTCCTTCAATAACCTGCAAATCAACCTTTTTTTTTTAATTTGTCTAGAACTTAAAATCCTTACCCGCTCCATTTTATGACGATATAGACGACATAGATGAGACCCATGCCACTCTGTAGAGTTCGTCGTGATCCTTCTCCATTGTCGGATCCACCTGAAGAAAAATAAATTAAAATTGGAATTAGAAACTACGATAATTTTTCATTTTGAAAAAATTTTATATTTCCGTTATTGAAAAATTCCACTTCGACAGAGGTGGCCCATTTTTCAAAGTATGAACACGTAACTTTCTTCCGAAAGTTTCTTGTTTGGATATGTTCTCAGCGAGCTACAACTACCGTAAAACCTGTAATAGAAAGGCCTTGACACTGTCAACTTTGAGCTCGATTATCTCTACTCCTACCAAAGATATCAAAAATGTGTCATCTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCCNNNNNGGC</site>
                <isoschizomers>
                    <enzyme>BglI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>166 106 104 91 87 57 54 52 45 33 32 23 23 19 19 15 14 10 9 8 8 6 5 4 3 3 2 2</canonical_bands>
                <polymorphic_bands>166 106 104 91 87 57 54 52 45 33 32 23 23 19 19 15 14 11 10 9 8 8 4 3 3 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>496 393 111</canonical_bands>
                <polymorphic_bands>889 111</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAACTGTTAGGATTTTGGACA</pcr_primer_p1>
		<pcr_primer_p2>TGTCGTCTATATCGTCATAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACAACTGTTAGGATTTTGGACACATGAGCCGCAGGGTTATTGAAAATAACCAAGCAATATTTTGCCCTGATGTGCCACACAGGCACAGTGATGCAGTGGCAAACATCCCAGGGTTCGTAGGGCTCGTTCGGATGTTGTTGATTTCTCCTCTATTTCCTTCAATAACCTGCAAATCAACCTTTTTTTTTTAATTTGTCTAGAACTTAAAATCCTTACCCGCTCCATTTTATGACGATATAGACGACA</canonical_amplicon>
		<polymorphic_amplicon>ACAACTGTTAGGATTTTGGACACATGAGCCGCAGGGTTATTGAAAATAACCAAGCAATATTTTGCCCTGATGTGCCACACAGGYACAGTGATGCAGTGGCAAACATCCCAGGGTTCGTAGGGCTCGTTCGGATGTTGTTGATTTCTCCTCTATTTCCTTCAATAACCTGCAAATCAACCTTTTTTTTTTAATTTGTCTAGAACTTAAAATCCTTACCCGCTCCATTTTATGACGATATAGACGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7489</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>736238</contig_pos>
        <strand>+</strand>
        <context>ACAGGYACAG[C/T]GATGCAGTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGAAAATAACCAAGCAATATTTTGCCCTGATGTGCCACACAGGCACAG</left_flank>
        <right_flank>GATGCAGTGGCAAACATCCCAGGGTTCGTAGGGCTCGTTCGGATGTTGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGATTAACTCACTCATTAATGGATTTTAGGTTGCAGAAAACCACCACACCTTTACCGACCGTGGCCACCCATTTCCGGTTTTGTTTGGGTCTCAAAAACACATTTGTGAACTTACAAGATTTTTTCAGCCAATCTCAGCCTTGGATCCATGTTCAACTCATCTCTAAAAATGCATTTTTTATTTGAAATTCAATGGAGAAGCCAAAATAACTCACTTTATATTTTCAATCGATCTCCCTGCCTTGGTCCTTTTATAGCATTTTTTCAAGTGGCTTTTAACATTTTCTTCAGCAAGATTCCAGCAGACAATCTTGTGATCGAAACCACCGCTAAATAGGGGGCGTCCATCGGGACTCCATTCCTGAAAAGGAAGATTTATAATTTCAATTTTATGGGAAAATAAAACTTACAACTGTTAGGATTTTGGACACATGAGCCGCAGGGTTATTGAAAATAACCAAGCAATATTTTGCCCTGATGTGCCACACAGGCACAGTGATGCAGTGGCAAACATCCCAGGGTTCGTAGGGCTCGTTCGGATGTTGTTGATTTCTCCTCTATTTCCTTCAATAACCTGCAAATCAACCTTTTTTTTTTAATTTGTCTAGAACTTAAAATCCTTACCCGCTCCATTTTATGACGATATAGACGACATAGATGAGACCCATGCCACTCTGTAGAGTTCGTCGTGATCCTTCTCCATTGTCGGATCCACCTGAAGAAAAATAAATTAAAATTGGAATTAGAAACTACGATAATTTTTCATTTTGAAAAAATTTTATATTTCCGTTATTGAAAAATTCCACTTCGACAGAGGTGGCCCATTTTTCAAAGTATGAACACGTAACTTTCTTCCGAAAGTTTCTTGTTTGGATATGTTCTCAGCGAGCTACAACTACCGTAAAACCTGTAATAGAAAGGCCTTGACACTGTCAACTTTGAGCTCGATTATCTCTACTCCTACCAAAGATATCAAAAATGTGTCATCTGATAAAAT</canonical>
            <polymorphic>TTTTGATTAACTCACTCATTAATGGATTTTAGGTTGCAGAAAACCACCACACCTTTACCGACCGTGGCCACCCATTTCCGGTTTTGTTTGGGTCTCAAAAACACATTTGTGAACTTACAAGATTTTTTCAGCCAATCTCAGCCTTGGATCCATGTTCAACTCATCTCTAAAAATGCATTTTTTATTTGAAATTCAATGGAGAAGCCAAAATAACTCACTTTATATTTTCAATCGATCTCCCTGCCTTGGTCCTTTTATAGCATTTTTTCAAGTGGCTTTTAACATTTTCTTCAGCAAGATTCCAGCAGACAATCTTGTGATCGAAACCACCGCTAAATAGGGGGCGTCCATCGGGACTCCATTCCTGAAAAGGAAGATTTATAATTTCAATTTTATGGGAAAATAAAACTTACAACTGTTAGGATTTTGGACACATGAGCCGCAGGGTTATTGAAAATAACCAAGCAATATTTTGCCCTGATGTGCCACACAGGCACAGYGATGCAGTGGCAAACATCCCAGGGTTCGTAGGGCTCGTTCGGATGTTGTTGATTTCTCCTCTATTTCCTTCAATAACCTGCAAATCAACCTTTTTTTTTTAATTTGTCTAGAACTTAAAATCCTTACCCGCTCCATTTTATGACGATATAGACGACATAGATGAGACCCATGCCACTCTGTAGAGTTCGTCGTGATCCTTCTCCATTGTCGGATCCACCTGAAGAAAAATAAATTAAAATTGGAATTAGAAACTACGATAATTTTTCATTTTGAAAAAATTTTATATTTCCGTTATTGAAAAATTCCACTTCGACAGAGGTGGCCCATTTTTCAAAGTATGAACACGTAACTTTCTTCCGAAAGTTTCTTGTTTGGATATGTTCTCAGCGAGCTACAACTACCGTAAAACCTGTAATAGAAAGGCCTTGACACTGTCAACTTTGAGCTCGATTATCTCTACTCCTACCAAAGATATCAAAAATGTGTCATCTGATAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>405 354 81 66 63 31</canonical_bands>
                <polymorphic_bands>486 354 66 63 31</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>166 106 104 91 87 57 54 52 45 33 32 23 23 19 15 14 14 14 10 8 8 6 5 4 3 3 2 2</canonical_bands>
                <polymorphic_bands>166 106 104 91 87 57 54 52 45 33 32 23 23 19 15 14 14 14 13 10 8 6 4 3 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAACTGTTAGGATTTTGGACA</pcr_primer_p1>
		<pcr_primer_p2>TGTCGTCTATATCGTCATAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACAACTGTTAGGATTTTGGACACATGAGCCGCAGGGTTATTGAAAATAACCAAGCAATATTTTGCCCTGATGTGCCACACAGGCACAGTGATGCAGTGGCAAACATCCCAGGGTTCGTAGGGCTCGTTCGGATGTTGTTGATTTCTCCTCTATTTCCTTCAATAACCTGCAAATCAACCTTTTTTTTTTAATTTGTCTAGAACTTAAAATCCTTACCCGCTCCATTTTATGACGATATAGACGACA</canonical_amplicon>
		<polymorphic_amplicon>ACAACTGTTAGGATTTTGGACACATGAGCCGCAGGGTTATTGAAAATAACCAAGCAATATTTTGCCCTGATGTGCCACACAGGCACAGYGATGCAGTGGCAAACATCCCAGGGTTCGTAGGGCTCGTTCGGATGTTGTTGATTTCTCCTCTATTTCCTTCAATAACCTGCAAATCAACCTTTTTTTTTTAATTTGTCTAGAACTTAAAATCCTTACCCGCTCCATTTTATGACGATATAGACGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7490</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>736265</contig_pos>
        <strand>+</strand>
        <context>TCCCAGGGTT[C/T]GTAGGGCTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTGATGTGCCACACAGGCACAGTGATGCAGTGGCAAACATCCCAGGGTT</left_flank>
        <right_flank>GTAGGGCTCGTTCGGATGTTGTTGATTTCTCCTCTATTTCCTTCAATAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAGGTTGCAGAAAACCACCACACCTTTACCGACCGTGGCCACCCATTTCCGGTTTTGTTTGGGTCTCAAAAACACATTTGTGAACTTACAAGATTTTTTCAGCCAATCTCAGCCTTGGATCCATGTTCAACTCATCTCTAAAAATGCATTTTTTATTTGAAATTCAATGGAGAAGCCAAAATAACTCACTTTATATTTTCAATCGATCTCCCTGCCTTGGTCCTTTTATAGCATTTTTTCAAGTGGCTTTTAACATTTTCTTCAGCAAGATTCCAGCAGACAATCTTGTGATCGAAACCACCGCTAAATAGGGGGCGTCCATCGGGACTCCATTCCTGAAAAGGAAGATTTATAATTTCAATTTTATGGGAAAATAAAACTTACAACTGTTAGGATTTTGGACACATGAGCCGCAGGGTTATTGAAAATAACCAAGCAATATTTTGCCCTGATGTGCCACACAGGCACAGTGATGCAGTGGCAAACATCCCAGGGTTCGTAGGGCTCGTTCGGATGTTGTTGATTTCTCCTCTATTTCCTTCAATAACCTGCAAATCAACCTTTTTTTTTTAATTTGTCTAGAACTTAAAATCCTTACCCGCTCCATTTTATGACGATATAGACGACATAGATGAGACCCATGCCACTCTGTAGAGTTCGTCGTGATCCTTCTCCATTGTCGGATCCACCTGAAGAAAAATAAATTAAAATTGGAATTAGAAACTACGATAATTTTTCATTTTGAAAAAATTTTATATTTCCGTTATTGAAAAATTCCACTTCGACAGAGGTGGCCCATTTTTCAAAGTATGAACACGTAACTTTCTTCCGAAAGTTTCTTGTTTGGATATGTTCTCAGCGAGCTACAACTACCGTAAAACCTGTAATAGAAAGGCCTTGACACTGTCAACTTTGAGCTCGATTATCTCTACTCCTACCAAAGATATCAAAAATGTGTCATCTGATAAAATAGTGCTGATATCATAATAAACAATTTT</canonical>
            <polymorphic>TTTAGGTTGCAGAAAACCACCACACCTTTACCGACCGTGGCCACCCATTTCCGGTTTTGTTTGGGTCTCAAAAACACATTTGTGAACTTACAAGATTTTTTCAGCCAATCTCAGCCTTGGATCCATGTTCAACTCATCTCTAAAAATGCATTTTTTATTTGAAATTCAATGGAGAAGCCAAAATAACTCACTTTATATTTTCAATCGATCTCCCTGCCTTGGTCCTTTTATAGCATTTTTTCAAGTGGCTTTTAACATTTTCTTCAGCAAGATTCCAGCAGACAATCTTGTGATCGAAACCACCGCTAAATAGGGGGCGTCCATCGGGACTCCATTCCTGAAAAGGAAGATTTATAATTTCAATTTTATGGGAAAATAAAACTTACAACTGTTAGGATTTTGGACACATGAGCCGCAGGGTTATTGAAAATAACCAAGCAATATTTTGCCCTGATGTGCCACACAGGCACAGTGATGCAGTGGCAAACATCCCAGGGTTYGTAGGGCTCGTTCGGATGTTGTTGATTTCTCCTCTATTTCCTTCAATAACCTGCAAATCAACCTTTTTTTTTTAATTTGTCTAGAACTTAAAATCCTTACCCGCTCCATTTTATGACGATATAGACGACATAGATGAGACCCATGCCACTCTGTAGAGTTCGTCGTGATCCTTCTCCATTGTCGGATCCACCTGAAGAAAAATAAATTAAAATTGGAATTAGAAACTACGATAATTTTTCATTTTGAAAAAATTTTATATTTCCGTTATTGAAAAATTCCACTTCGACAGAGGTGGCCCATTTTTCAAAGTATGAACACGTAACTTTCTTCCGAAAGTTTCTTGTTTGGATATGTTCTCAGCGAGCTACAACTACCGTAAAACCTGTAATAGAAAGGCCTTGACACTGTCAACTTTGAGCTCGATTATCTCTACTCCTACCAAAGATATCAAAAATGTGTCATCTGATAAAATAGTGCTGATATCATAATAAACAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAACTGTTAGGATTTTGGACA</pcr_primer_p1>
		<pcr_primer_p2>TGTCGTCTATATCGTCATAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACAACTGTTAGGATTTTGGACACATGAGCCGCAGGGTTATTGAAAATAACCAAGCAATATTTTGCCCTGATGTGCCACACAGGCACAGTGATGCAGTGGCAAACATCCCAGGGTTCGTAGGGCTCGTTCGGATGTTGTTGATTTCTCCTCTATTTCCTTCAATAACCTGCAAATCAACCTTTTTTTTTTAATTTGTCTAGAACTTAAAATCCTTACCCGCTCCATTTTATGACGATATAGACGACA</canonical_amplicon>
		<polymorphic_amplicon>ACAACTGTTAGGATTTTGGACACATGAGCCGCAGGGTTATTGAAAATAACCAAGCAATATTTTGCCCTGATGTGCCACACAGGCACAGTGATGCAGTGGCAAACATCCCAGGGTTYGTAGGGCTCGTTCGGATGTTGTTGATTTCTCCTCTATTTCCTTCAATAACCTGCAAATCAACCTTTTTTTTTTAATTTGTCTAGAACTTAAAATCCTTACCCGCTCCATTTTATGACGATATAGACGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7493</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>736459</contig_pos>
        <strand>+</strand>
        <context>GGATCCACCT[A/G]AAGAAAAAWA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCCACTCTGTAGAGTTCGTCGTGATCCTTCTCCATTGTCGGATCCACCT</left_flank>
        <right_flank>AAGAAAAATAAATTAAAATTGGAATTAGAAACTACGATAATTTTTCATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATTTTCAATCGATCTCCCTGCCTTGGTCCTTTTATAGCATTTTTTCAAGTGGCTTTTAACATTTTCTTCAGCAAGATTCCAGCAGACAATCTTGTGATCGAAACCACCGCTAAATAGGGGGCGTCCATCGGGACTCCATTCCTGAAAAGGAAGATTTATAATTTCAATTTTATGGGAAAATAAAACTTACAACTGTTAGGATTTTGGACACATGAGCCGCAGGGTTATTGAAAATAACCAAGCAATATTTTGCCCTGATGTGCCACACAGGCACAGTGATGCAGTGGCAAACATCCCAGGGTTCGTAGGGCTCGTTCGGATGTTGTTGATTTCTCCTCTATTTCCTTCAATAACCTGCAAATCAACCTTTTTTTTTTAATTTGTCTAGAACTTAAAATCCTTACCCGCTCCATTTTATGACGATATAGACGACATAGATGAGACCCATGCCACTCTGTAGAGTTCGTCGTGATCCTTCTCCATTGTCGGATCCACCTGAAGAAAAATAAATTAAAATTGGAATTAGAAACTACGATAATTTTTCATTTTGAAAAAATTTTATATTTCCGTTATTGAAAAATTCCACTTCGACAGAGGTGGCCCATTTTTCAAAGTATGAACACGTAACTTTCTTCCGAAAGTTTCTTGTTTGGATATGTTCTCAGCGAGCTACAACTACCGTAAAACCTGTAATAGAAAGGCCTTGACACTGTCAACTTTGAGCTCGATTATCTCTACTCCTACCAAAGATATCAAAAATGTGTCATCTGATAAAATAGTGCTGATATCATAATAAACAATTTTTCAGTTGATAACTTTTTTATATCTTCCACAGAAACCAAGATGAATTGACTCAGAGGCAGAAGTTAGTGAGCTCTACCACAGGCTTTACTGTGTCACTATTTTTTTTCCTTTAAAGGTGAGGGGACAGGAGATTTTTCGTAGATTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATG</canonical>
            <polymorphic>ATATTTTCAATCGATCTCCCTGCCTTGGTCCTTTTATAGCATTTTTTCAAGTGGCTTTTAACATTTTCTTCAGCAAGATTCCAGCAGACAATCTTGTGATCGAAACCACCGCTAAATAGGGGGCGTCCATCGGGACTCCATTCCTGAAAAGGAAGATTTATAATTTCAATTTTATGGGAAAATAAAACTTACAACTGTTAGGATTTTGGACACATGAGCCGCAGGGTTATTGAAAATAACCAAGCAATATTTTGCCCTGATGTGCCACACAGGCACAGTGATGCAGTGGCAAACATCCCAGGGTTCGTAGGGCTCGTTCGGATGTTGTTGATTTCTCCTCTATTTCCTTCAATAACCTGCAAATCAACCTTTTTTTTTTAATTTGTCTAGAACTTAAAATCCTTACCCGCTCCATTTTATGACGATATAGACGACATAGATGAGACCCATGCCACTCTGTAGAGTTCGTCGTGATCCTTCTCCATTGTCGGATCCACCTRAAGAAAAATAAATTAAAATTGGAATTAGAAACTACGATAATTTTTCATTTTGAAAAAATTTTATATTTCCGTTATTGAAAAATTCCACTTCGACAGAGGTGGCCCATTTTTCAAAGTATGAACACGTAACTTTCTTCCGAAAGTTTCTTGTTTGGATATGTTCTCAGCGAGCTACAACTACCGTAAAACCTGTAATAGAAAGGCCTTGACACTGTCAACTTTGAGCTCGATTATCTCTACTCCTACCAAAGATATCAAAAATGTGTCATCTGATAAAATAGTGCTGATATCATAATAAACAATTTTTCAGTTGATAACTTTTTTATATCTTCCACAGAAACCAAGATGAATTGACTCAGAGGCAGAAGTTAGTGAGCTCTACCACAGGCTTTACTGTGTCACTATTTTTTTTCCTTTAAAGGTGAGGGGACAGGAGATTTTTCGTAGATTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTCTATTTCCTTCAATAACCT</pcr_primer_p1>
		<pcr_primer_p2>GAATTTTTCAATAACGGAAATATAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCTCTATTTCCTTCAATAACCTGCAAATCAACCTTTTTTTTTTAATTTGTCTAGAACTTAAAATCCTTACCCGCTCCATTTTATGACGATATAGACGACATAGATGAGACCCATGCCACTCTGTAGAGTTCGTCGTGATCCTTCTCCATTGTCGGATCCACCTGAAGAAAAATAAATTAAAATTGGAATTAGAAACTACGATAATTTTTCATTTTGAAAAAATTTTATATTTCCGTTATTGAAAAATTC</canonical_amplicon>
		<polymorphic_amplicon>TCCTCTATTTCCTTCAATAACCTGCAAATCAACCTTTTTTTTTTAATTTGTCTAGAACTTAAAATCCTTACCCGCTCCATTTTATGACGATATAGACGACATAGATGAGACCCATGCCACTCTGTAGAGTTCGTCGTGATCCTTCTCCATTGTCGGATCCACCTRAAGAAAAATAAATTAAAATTGGAATTAGAAACTACGATAATTTTTCATTTTGAAAAAATTTTATATTTCCGTTATTGAAAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7494</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>736468</contig_pos>
        <strand>+</strand>
        <context>TRAAGAAAAA[A/T]AAATTAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTAGAGTTCGTCGTGATCCTTCTCCATTGTCGGATCCACCTGAAGAAAAA</left_flank>
        <right_flank>AAATTAAAATTGGAATTAGAAACTACGATAATTTTTCATTTTGAAAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGATCTCCCTGCCTTGGTCCTTTTATAGCATTTTTTCAAGTGGCTTTTAACATTTTCTTCAGCAAGATTCCAGCAGACAATCTTGTGATCGAAACCACCGCTAAATAGGGGGCGTCCATCGGGACTCCATTCCTGAAAAGGAAGATTTATAATTTCAATTTTATGGGAAAATAAAACTTACAACTGTTAGGATTTTGGACACATGAGCCGCAGGGTTATTGAAAATAACCAAGCAATATTTTGCCCTGATGTGCCACACAGGCACAGTGATGCAGTGGCAAACATCCCAGGGTTCGTAGGGCTCGTTCGGATGTTGTTGATTTCTCCTCTATTTCCTTCAATAACCTGCAAATCAACCTTTTTTTTTTAATTTGTCTAGAACTTAAAATCCTTACCCGCTCCATTTTATGACGATATAGACGACATAGATGAGACCCATGCCACTCTGTAGAGTTCGTCGTGATCCTTCTCCATTGTCGGATCCACCTGAAGAAAAATAAATTAAAATTGGAATTAGAAACTACGATAATTTTTCATTTTGAAAAAATTTTATATTTCCGTTATTGAAAAATTCCACTTCGACAGAGGTGGCCCATTTTTCAAAGTATGAACACGTAACTTTCTTCCGAAAGTTTCTTGTTTGGATATGTTCTCAGCGAGCTACAACTACCGTAAAACCTGTAATAGAAAGGCCTTGACACTGTCAACTTTGAGCTCGATTATCTCTACTCCTACCAAAGATATCAAAAATGTGTCATCTGATAAAATAGTGCTGATATCATAATAAACAATTTTTCAGTTGATAACTTTTTTATATCTTCCACAGAAACCAAGATGAATTGACTCAGAGGCAGAAGTTAGTGAGCTCTACCACAGGCTTTACTGTGTCACTATTTTTTTTCCTTTAAAGGTGAGGGGACAGGAGATTTTTCGTAGATTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGC</canonical>
            <polymorphic>ATCGATCTCCCTGCCTTGGTCCTTTTATAGCATTTTTTCAAGTGGCTTTTAACATTTTCTTCAGCAAGATTCCAGCAGACAATCTTGTGATCGAAACCACCGCTAAATAGGGGGCGTCCATCGGGACTCCATTCCTGAAAAGGAAGATTTATAATTTCAATTTTATGGGAAAATAAAACTTACAACTGTTAGGATTTTGGACACATGAGCCGCAGGGTTATTGAAAATAACCAAGCAATATTTTGCCCTGATGTGCCACACAGGCACAGTGATGCAGTGGCAAACATCCCAGGGTTCGTAGGGCTCGTTCGGATGTTGTTGATTTCTCCTCTATTTCCTTCAATAACCTGCAAATCAACCTTTTTTTTTTAATTTGTCTAGAACTTAAAATCCTTACCCGCTCCATTTTATGACGATATAGACGACATAGATGAGACCCATGCCACTCTGTAGAGTTCGTCGTGATCCTTCTCCATTGTCGGATCCACCTGAAGAAAAAWAAATTAAAATTGGAATTAGAAACTACGATAATTTTTCATTTTGAAAAAATTTTATATTTCCGTTATTGAAAAATTCCACTTCGACAGAGGTGGCCCATTTTTCAAAGTATGAACACGTAACTTTCTTCCGAAAGTTTCTTGTTTGGATATGTTCTCAGCGAGCTACAACTACCGTAAAACCTGTAATAGAAAGGCCTTGACACTGTCAACTTTGAGCTCGATTATCTCTACTCCTACCAAAGATATCAAAAATGTGTCATCTGATAAAATAGTGCTGATATCATAATAAACAATTTTTCAGTTGATAACTTTTTTATATCTTCCACAGAAACCAAGATGAATTGACTCAGAGGCAGAAGTTAGTGAGCTCTACCACAGGCTTTACTGTGTCACTATTTTTTTTCCTTTAAAGGTGAGGGGACAGGAGATTTTTCGTAGATTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTCTATTTCCTTCAATAACCT</pcr_primer_p1>
		<pcr_primer_p2>GAATTTTTCAATAACGGAAATATAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCTCTATTTCCTTCAATAACCTGCAAATCAACCTTTTTTTTTTAATTTGTCTAGAACTTAAAATCCTTACCCGCTCCATTTTATGACGATATAGACGACATAGATGAGACCCATGCCACTCTGTAGAGTTCGTCGTGATCCTTCTCCATTGTCGGATCCACCTGAAGAAAAATAAATTAAAATTGGAATTAGAAACTACGATAATTTTTCATTTTGAAAAAATTTTATATTTCCGTTATTGAAAAATTC</canonical_amplicon>
		<polymorphic_amplicon>TCCTCTATTTCCTTCAATAACCTGCAAATCAACCTTTTTTTTTTAATTTGTCTAGAACTTAAAATCCTTACCCGCTCCATTTTATGACGATATAGACGACATAGATGAGACCCATGCCACTCTGTAGAGTTCGTCGTGATCCTTCTCCATTGTCGGATCCACCTGAAGAAAAAWAAATTAAAATTGGAATTAGAAACTACGATAATTTTTCATTTTGAAAAAATTTTATATTTCCGTTATTGAAAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7496</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>738377</contig_pos>
        <strand>+</strand>
        <context>TGGAAACCTG[A/T]AAATAATAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTG</left_flank>
        <right_flank>AAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTCTTTTAATCATGGAACATGGAGTTCTTCGCGAAGATATCCAGTAAAATCGGTTTTGCATCTTCTTCGTGGAGTGGAGAATAATGCAGAAAAGCAATAGTTGCTTTGTCTGGCCTACGGTTTAGAGCAAAGATTGTTCCAACTTCGATTTTAGTTCCTTTGTGAGTTTACGGAACTGAAGACAATTCGTAAAGTCTTTATGTTATCAAAAACTAGATTGAGAGTGTTTTAAGCGGTAACTTTAGTTTAGTAGGCAAAATCGACTATTATTTTTAGGAATTTGAACCACATTTGTACAGTTATATACGCCAATTCAAAATTTACTGTTTCAACTGTGAAACAGTACAGAATTCAAGAAGACTCACCTTTTTCAAACAAAATTTCGGCAACATTAAAAGG</canonical>
            <polymorphic>GAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGWAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTCTTTTAATCATGGAACATGGAGTTCTTCGCGAAGATATCCAGTAAAATCGGTTTTGCATCTTCTTCGTGGAGTGGAGAATAATGCAGAAAAGCAATAGTTGCTTTGTCTGGCCTACGGTTTAGAGCAAAGATTGTTCCAACTTCGATTTTAGTTCCTTTGTGAGTTTACGGAACTGAAGACAATTCGTAAAGTCTTTATGTTATCAAAAACTAGATTGAGAGTGTTTTAAGCGGTAACTTTAGTTTAGTAGGCAAAATCGACTATTATTTTTAGGAATTTGAACCACATTTGTACAGTTATATACGCCAATTCAAAATTTACTGTTTCAACTGTGAAACAGTACAGAATTCAAGAAGACTCACCTTTTTCAAACAAAATTTCGGCAACATTAAAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAAGGGAGACTTTTTAGAAT</pcr_primer_p1>
		<pcr_primer_p2>GAATATTGAACCGAAAAATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTC</canonical_amplicon>
		<polymorphic_amplicon>GAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGWAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7497</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>738357</contig_pos>
        <strand>+</strand>
        <context>AAACTGGGAT[A/G]GTGTTAGTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGAT</left_flank>
        <right_flank>GTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTCTTTTAATCATGGAACATGGAGTTCTTCGCGAAGATATCCAGTAAAATCGGTTTTGCATCTTCTTCGTGGAGTGGAGAATAATGCAGAAAAGCAATAGTTGCTTTGTCTGGCCTACGGTTTAGAGCAAAGATTGTTCCAACTTCGATTTTAGTTCCTTTGTGAGTTTACGGAACTGAAGACAATTCGTAAAGTCTTTATGTTATCAAAAACTAGATTGAGAGTGTTTTAAGCGGTAACTTTAGTTTAGTAGGCAAAATCGACTATTATTTTTAGGAATTTGAACCACATTTGTACAGTTATATACGCCAATTCAAAATTTACTGTTTCAACTGTGAAACAGTACAGAATTCAAGAAGACTCACCTTTTTCAAACAAA</canonical>
            <polymorphic>CGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATRGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTCTTTTAATCATGGAACATGGAGTTCTTCGCGAAGATATCCAGTAAAATCGGTTTTGCATCTTCTTCGTGGAGTGGAGAATAATGCAGAAAAGCAATAGTTGCTTTGTCTGGCCTACGGTTTAGAGCAAAGATTGTTCCAACTTCGATTTTAGTTCCTTTGTGAGTTTACGGAACTGAAGACAATTCGTAAAGTCTTTATGTTATCAAAAACTAGATTGAGAGTGTTTTAAGCGGTAACTTTAGTTTAGTAGGCAAAATCGACTATTATTTTTAGGAATTTGAACCACATTTGTACAGTTATATACGCCAATTCAAAATTTACTGTTTCAACTGTGAAACAGTACAGAATTCAAGAAGACTCACCTTTTTCAAACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAAGGGAGACTTTTTAGAAT</pcr_primer_p1>
		<pcr_primer_p2>GAATATTGAACCGAAAAATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTC</canonical_amplicon>
		<polymorphic_amplicon>GAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATRGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7498</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>738327</contig_pos>
        <strand>+</strand>
        <context>TTCAAGTTTT[C/T]TTATTTCGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTT</left_flank>
        <right_flank>TTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTCTTTTAATCATGGAACATGGAGTTCTTCGCGAAGATATCCAGTAAAATCGGTTTTGCATCTTCTTCGTGGAGTGGAGAATAATGCAGAAAAGCAATAGTTGCTTTGTCTGGCCTACGGTTTAGAGCAAAGATTGTTCCAACTTCGATTTTAGTTCCTTTGTGAGTTTACGGAACTGAAGACAATTCGTAAAGTCTTTATGTTATCAAAAACTAGATTGAGAGTGTTTTAAGCGGTAACTTTAGTTTAGTAGGCAAAATCGACTATTATTTTTAGGAATTTGAACCACATTTGTACAGTTATATACGCCAATTCAAAATTTACTGTTTCAACTGTGAAACAGTACAGA</canonical>
            <polymorphic>TAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTYTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTCTTTTAATCATGGAACATGGAGTTCTTCGCGAAGATATCCAGTAAAATCGGTTTTGCATCTTCTTCGTGGAGTGGAGAATAATGCAGAAAAGCAATAGTTGCTTTGTCTGGCCTACGGTTTAGAGCAAAGATTGTTCCAACTTCGATTTTAGTTCCTTTGTGAGTTTACGGAACTGAAGACAATTCGTAAAGTCTTTATGTTATCAAAAACTAGATTGAGAGTGTTTTAAGCGGTAACTTTAGTTTAGTAGGCAAAATCGACTATTATTTTTAGGAATTTGAACCACATTTGTACAGTTATATACGCCAATTCAAAATTTACTGTTTCAACTGTGAAACAGTACAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAAGGGAGACTTTTTAGAAT</pcr_primer_p1>
		<pcr_primer_p2>GAATATTGAACCGAAAAATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTC</canonical_amplicon>
		<polymorphic_amplicon>GAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTYTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7499</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>738293</contig_pos>
        <strand>+</strand>
        <context>TCAAATGCAW[C/T]TCCAGTACAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAA</left_flank>
        <right_flank>TCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTCTTTTAATCATGGAACATGGAGTTCTTCGCGAAGATATCCAGTAAAATCGGTTTTGCATCTTCTTCGTGGAGTGGAGAATAATGCAGAAAAGCAATAGTTGCTTTGTCTGGCCTACGGTTTAGAGCAAAGATTGTTCCAACTTCGATTTTAGTTCCTTTGTGAGTTTACGGAACTGAAGACAATTCGTAAAGTCTTTATGTTATCAAAAACTAGATTGAGAGTGTTTTAAGCGGTAACTTTAGTTTAGTAGGCAAAATCGACTATTATTTTTAGGAATTTGAACCACATTTGTACAGTTATATACGCCAATTC</canonical>
            <polymorphic>TCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAAYTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTCTTTTAATCATGGAACATGGAGTTCTTCGCGAAGATATCCAGTAAAATCGGTTTTGCATCTTCTTCGTGGAGTGGAGAATAATGCAGAAAAGCAATAGTTGCTTTGTCTGGCCTACGGTTTAGAGCAAAGATTGTTCCAACTTCGATTTTAGTTCCTTTGTGAGTTTACGGAACTGAAGACAATTCGTAAAGTCTTTATGTTATCAAAAACTAGATTGAGAGTGTTTTAAGCGGTAACTTTAGTTTAGTAGGCAAAATCGACTATTATTTTTAGGAATTTGAACCACATTTGTACAGTTATATACGCCAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAAGGGAGACTTTTTAGAAT</pcr_primer_p1>
		<pcr_primer_p2>GAATATTGAACCGAAAAATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTC</canonical_amplicon>
		<polymorphic_amplicon>GAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAAYTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7500</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>738292</contig_pos>
        <strand>+</strand>
        <context>TTCAAATGCA[A/T]YTCCAGTACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCA</left_flank>
        <right_flank>CTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTCTTTTAATCATGGAACATGGAGTTCTTCGCGAAGATATCCAGTAAAATCGGTTTTGCATCTTCTTCGTGGAGTGGAGAATAATGCAGAAAAGCAATAGTTGCTTTGTCTGGCCTACGGTTTAGAGCAAAGATTGTTCCAACTTCGATTTTAGTTCCTTTGTGAGTTTACGGAACTGAAGACAATTCGTAAAGTCTTTATGTTATCAAAAACTAGATTGAGAGTGTTTTAAGCGGTAACTTTAGTTTAGTAGGCAAAATCGACTATTATTTTTAGGAATTTGAACCACATTTGTACAGTTATATACGCCAATT</canonical>
            <polymorphic>TTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAWCTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTCTTTTAATCATGGAACATGGAGTTCTTCGCGAAGATATCCAGTAAAATCGGTTTTGCATCTTCTTCGTGGAGTGGAGAATAATGCAGAAAAGCAATAGTTGCTTTGTCTGGCCTACGGTTTAGAGCAAAGATTGTTCCAACTTCGATTTTAGTTCCTTTGTGAGTTTACGGAACTGAAGACAATTCGTAAAGTCTTTATGTTATCAAAAACTAGATTGAGAGTGTTTTAAGCGGTAACTTTAGTTTAGTAGGCAAAATCGACTATTATTTTTAGGAATTTGAACCACATTTGTACAGTTATATACGCCAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAAGGGAGACTTTTTAGAAT</pcr_primer_p1>
		<pcr_primer_p2>GAATATTGAACCGAAAAATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTC</canonical_amplicon>
		<polymorphic_amplicon>GAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAWCTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7501</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>738268</contig_pos>
        <strand>+</strand>
        <context>AGTTCACATG[A/C]CTATCGTTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATG</left_flank>
        <right_flank>CTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTCTTTTAATCATGGAACATGGAGTTCTTCGCGAAGATATCCAGTAAAATCGGTTTTGCATCTTCTTCGTGGAGTGGAGAATAATGCAGAAAAGCAATAGTTGCTTTGTCTGGCCTACGGTTTAGAGCAAAGATTGTTCCAACTTCGATTTTAGTTCCTTTGTGAGTTTACGGAACTGAAGACAATTCGTAAAGTCTTTATGTTATCAAAAACTAGATTGAGAGTGTTTTAAGCGGTAACTTTAGTTTAGTAGGCAAAATCGACTATTATTTTTAGGAATTTGAACCACA</canonical>
            <polymorphic>GTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGMCTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTCTTTTAATCATGGAACATGGAGTTCTTCGCGAAGATATCCAGTAAAATCGGTTTTGCATCTTCTTCGTGGAGTGGAGAATAATGCAGAAAAGCAATAGTTGCTTTGTCTGGCCTACGGTTTAGAGCAAAGATTGTTCCAACTTCGATTTTAGTTCCTTTGTGAGTTTACGGAACTGAAGACAATTCGTAAAGTCTTTATGTTATCAAAAACTAGATTGAGAGTGTTTTAAGCGGTAACTTTAGTTTAGTAGGCAAAATCGACTATTATTTTTAGGAATTTGAACCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACTGAATACCGATATTTGATCTT</pcr_primer_p1>
		<pcr_primer_p2>AAAATAAAATCCACTGGACGTA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>TTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGMCTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7502</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>738255</contig_pos>
        <strand>+</strand>
        <context>TTTTTAGAAT[A/C]ACAGTTCACA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAAT</left_flank>
        <right_flank>ACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTCTTTTAATCATGGAACATGGAGTTCTTCGCGAAGATATCCAGTAAAATCGGTTTTGCATCTTCTTCGTGGAGTGGAGAATAATGCAGAAAAGCAATAGTTGCTTTGTCTGGCCTACGGTTTAGAGCAAAGATTGTTCCAACTTCGATTTTAGTTCCTTTGTGAGTTTACGGAACTGAAGACAATTCGTAAAGTCTTTATGTTATCAAAAACTAGATTGAGAGTGTTTTAAGCGGTAACTTTAGTTTAGTAGGCAAAATCGACTATTATTTTTAGG</canonical>
            <polymorphic>GAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATMACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTCTTTTAATCATGGAACATGGAGTTCTTCGCGAAGATATCCAGTAAAATCGGTTTTGCATCTTCTTCGTGGAGTGGAGAATAATGCAGAAAAGCAATAGTTGCTTTGTCTGGCCTACGGTTTAGAGCAAAGATTGTTCCAACTTCGATTTTAGTTCCTTTGTGAGTTTACGGAACTGAAGACAATTCGTAAAGTCTTTATGTTATCAAAAACTAGATTGAGAGTGTTTTAAGCGGTAACTTTAGTTTAGTAGGCAAAATCGACTATTATTTTTAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>221 96 95 93 88 62 58 52 51 39 32 19 19 17 16 16 7 6 5 4 2 2</canonical_bands>
                <polymorphic_bands>228 96 95 93 88 62 58 52 51 39 32 19 19 17 16 16 6 5 4 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACTGAATACCGATATTTGATCTT</pcr_primer_p1>
		<pcr_primer_p2>AAAATAAAATCCACTGGACGTA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>TTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATMACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7503</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>738228</contig_pos>
        <strand>+</strand>
        <context>TGATCTTAAA[A/G]AGGGAGAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAA</left_flank>
        <right_flank>AGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTCTTTTAATCATGGAACATGGAGTTCTTCGCGAAGATATCCAGTAAAATCGGTTTTGCATCTTCTTCGTGGAGTGGAGAATAATGCAGAAAAGCAATAGTTGCTTTGTCTGGCCTACGGTTTAGAGCAAAGATTGTTCCAACTTCGATTTTAGTTCCTTTGTGAGTTTACGGAACTGAAGACAATTCGTAAAGTCTTTATGTTATCAAAAACTAGATTGAGAGTGTTTTAAGCGGTAACTTTAGTTTAG</canonical>
            <polymorphic>TTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAARAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTCTTTTAATCATGGAACATGGAGTTCTTCGCGAAGATATCCAGTAAAATCGGTTTTGCATCTTCTTCGTGGAGTGGAGAATAATGCAGAAAAGCAATAGTTGCTTTGTCTGGCCTACGGTTTAGAGCAAAGATTGTTCCAACTTCGATTTTAGTTCCTTTGTGAGTTTACGGAACTGAAGACAATTCGTAAAGTCTTTATGTTATCAAAAACTAGATTGAGAGTGTTTTAAGCGGTAACTTTAGTTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAAAAGAAGAGGAGAAGAGG</pcr_primer_p1>
		<pcr_primer_p2>ATTTGAAAACGGAACGATAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAAT</canonical_amplicon>
		<polymorphic_amplicon>AACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAARAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7504</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>738190</contig_pos>
        <strand>+</strand>
        <context>TAGAAATTGC[A/G]AATTCAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGC</left_flank>
        <right_flank>AATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATGGAAAAACTAACAGTTTGTCTCATGAAACTCTTTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTCTTTTAATCATGGAACATGGAGTTCTTCGCGAAGATATCCAGTAAAATCGGTTTTGCATCTTCTTCGTGGAGTGGAGAATAATGCAGAAAAGCAATAGTTGCTTTGTCTGGCCTACGGTTTAGAGCAAAGATTGTTCCAACTTCGATTTTAGTTCCTTTGTGAGTTTACGGAACTGAAGACAATTCGTAAAGTCTTTATGTTATCAAAAA</canonical>
            <polymorphic>AAAAATGGAAAAACTAACAGTTTGTCTCATGAAACTCTTTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCRAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTCTTTTAATCATGGAACATGGAGTTCTTCGCGAAGATATCCAGTAAAATCGGTTTTGCATCTTCTTCGTGGAGTGGAGAATAATGCAGAAAAGCAATAGTTGCTTTGTCTGGCCTACGGTTTAGAGCAAAGATTGTTCCAACTTCGATTTTAGTTCCTTTGTGAGTTTACGGAACTGAAGACAATTCGTAAAGTCTTTATGTTATCAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>332 269 231 72 60 20 8 8</canonical_bands>
                <polymorphic_bands>332 291 269 72 20 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>498 247 126 101 28</canonical_bands>
                <polymorphic_bands>599 247 126 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAAAAGAAGAGGAGAAGAGG</pcr_primer_p1>
		<pcr_primer_p2>ATTTGAAAACGGAACGATAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAAT</canonical_amplicon>
		<polymorphic_amplicon>AACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCRAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7505</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>738178</contig_pos>
        <strand>+</strand>
        <context>AGGAAAGAGA[A/G]TTAGAAATTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGA</left_flank>
        <right_flank>TTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTATTTGGGAAAAAAATGGAAAAACTAACAGTTTGTCTCATGAAACTCTTTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTCTTTTAATCATGGAACATGGAGTTCTTCGCGAAGATATCCAGTAAAATCGGTTTTGCATCTTCTTCGTGGAGTGGAGAATAATGCAGAAAAGCAATAGTTGCTTTGTCTGGCCTACGGTTTAGAGCAAAGATTGTTCCAACTTCGATTTTAGTTCCTTTGTGAGTTTACGGAACTGAAGACAATTCGTAAAGTCTTTA</canonical>
            <polymorphic>GTTATTTGGGAAAAAAATGGAAAAACTAACAGTTTGTCTCATGAAACTCTTTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGARTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTCTTTTAATCATGGAACATGGAGTTCTTCGCGAAGATATCCAGTAAAATCGGTTTTGCATCTTCTTCGTGGAGTGGAGAATAATGCAGAAAAGCAATAGTTGCTTTGTCTGGCCTACGGTTTAGAGCAAAGATTGTTCCAACTTCGATTTTAGTTCCTTTGTGAGTTTACGGAACTGAAGACAATTCGTAAAGTCTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAAAAGAAGAGGAGAAGAGG</pcr_primer_p1>
		<pcr_primer_p2>ATTTGAAAACGGAACGATAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAAT</canonical_amplicon>
		<polymorphic_amplicon>AACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGARTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7506</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>738163</contig_pos>
        <strand>+</strand>
        <context>TYTTTTATTT[C/T]TCCAAGGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTT</left_flank>
        <right_flank>TCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAAGAATCTGTGTTATTTGGGAAAAAAATGGAAAAACTAACAGTTTGTCTCATGAAACTCTTTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTCTTTTAATCATGGAACATGGAGTTCTTCGCGAAGATATCCAGTAAAATCGGTTTTGCATCTTCTTCGTGGAGTGGAGAATAATGCAGAAAAGCAATAGTTGCTTTGTCTGGCCTACGGTTTAGAGCAAAGATTGTTCCAACTTCGATTTTAGTTCCTTTGTGAGTTTACGGAACTGAAGACAA</canonical>
            <polymorphic>AAAAAAAGAATCTGTGTTATTTGGGAAAAAAATGGAAAAACTAACAGTTTGTCTCATGAAACTCTTTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTYTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTCTTTTAATCATGGAACATGGAGTTCTTCGCGAAGATATCCAGTAAAATCGGTTTTGCATCTTCTTCGTGGAGTGGAGAATAATGCAGAAAAGCAATAGTTGCTTTGTCTGGCCTACGGTTTAGAGCAAAGATTGTTCCAACTTCGATTTTAGTTCCTTTGTGAGTTTACGGAACTGAAGACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGTGTGCGTGTATATCTG</pcr_primer_p1>
		<pcr_primer_p2>AAGATCAAATATCGGTATTCAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTT</canonical_amplicon>
		<polymorphic_amplicon>TTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTYTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7507</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>738154</contig_pos>
        <strand>+</strand>
        <context>TTTCGTTTTT[C/T]TTTTATTTYT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTT</left_flank>
        <right_flank>TTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATTTAAAAAAAAAAGAATCTGTGTTATTTGGGAAAAAAATGGAAAAACTAACAGTTTGTCTCATGAAACTCTTTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTCTTTTAATCATGGAACATGGAGTTCTTCGCGAAGATATCCAGTAAAATCGGTTTTGCATCTTCTTCGTGGAGTGGAGAATAATGCAGAAAAGCAATAGTTGCTTTGTCTGGCCTACGGTTTAGAGCAAAGATTGTTCCAACTTCGATTTTAGTTCCTTTGTGAGTTTACGGAAC</canonical>
            <polymorphic>CTATTTAAAAAAAAAAGAATCTGTGTTATTTGGGAAAAAAATGGAAAAACTAACAGTTTGTCTCATGAAACTCTTTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTYTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTCTTTTAATCATGGAACATGGAGTTCTTCGCGAAGATATCCAGTAAAATCGGTTTTGCATCTTCTTCGTGGAGTGGAGAATAATGCAGAAAAGCAATAGTTGCTTTGTCTGGCCTACGGTTTAGAGCAAAGATTGTTCCAACTTCGATTTTAGTTCCTTTGTGAGTTTACGGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGTGTGCGTGTATATCTG</pcr_primer_p1>
		<pcr_primer_p2>AAGATCAAATATCGGTATTCAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTT</canonical_amplicon>
		<polymorphic_amplicon>TTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTYTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7508</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>738106</contig_pos>
        <strand>+</strand>
        <context>TCCAAATATG[A/G]AAAACAAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATG</left_flank>
        <right_flank>AAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGCGCTGTAAAATTGTATATGTTTATCGTGCTATTTATAAAAAATCTATTTAAAAAAAAAAGAATCTGTGTTATTTGGGAAAAAAATGGAAAAACTAACAGTTTGTCTCATGAAACTCTTTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTCTTTTAATCATGGAACATGGAGTTCTTCGCGAAGATATCCAGTAAAATCGGTTTTGCATCTTCTTCGTGGAGTGGAGAATAATGCAGAAAAGCAATAGTTGCTTTGTCTGGCCTACGGTTTAGAGC</canonical>
            <polymorphic>AAATGCGCTGTAAAATTGTATATGTTTATCGTGCTATTTATAAAAAATCTATTTAAAAAAAAAAGAATCTGTGTTATTTGGGAAAAAAATGGAAAAACTAACAGTTTGTCTCATGAAACTCTTTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGRAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTCTTTTAATCATGGAACATGGAGTTCTTCGCGAAGATATCCAGTAAAATCGGTTTTGCATCTTCTTCGTGGAGTGGAGAATAATGCAGAAAAGCAATAGTTGCTTTGTCTGGCCTACGGTTTAGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGTGTGCGTGTATATCTG</pcr_primer_p1>
		<pcr_primer_p2>AAGATCAAATATCGGTATTCAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTT</canonical_amplicon>
		<polymorphic_amplicon>TTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGRAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7509</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>738092</contig_pos>
        <strand>+</strand>
        <context>CATCTCATAA[A/G]TTTTCCAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAA</left_flank>
        <right_flank>TTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTGATCTTTGGAAAATGCGCTGTAAAATTGTATATGTTTATCGTGCTATTTATAAAAAATCTATTTAAAAAAAAAAGAATCTGTGTTATTTGGGAAAAAAATGGAAAAACTAACAGTTTGTCTCATGAAACTCTTTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTCTTTTAATCATGGAACATGGAGTTCTTCGCGAAGATATCCAGTAAAATCGGTTTTGCATCTTCTTCGTGGAGTGGAGAATAATGCAGAAAAGCAATAGTTGCTTTGTCTGGC</canonical>
            <polymorphic>TGCTGATCTTTGGAAAATGCGCTGTAAAATTGTATATGTTTATCGTGCTATTTATAAAAAATCTATTTAAAAAAAAAAGAATCTGTGTTATTTGGGAAAAAAATGGAAAAACTAACAGTTTGTCTCATGAAACTCTTTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAARTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTCTTTTAATCATGGAACATGGAGTTCTTCGCGAAGATATCCAGTAAAATCGGTTTTGCATCTTCTTCGTGGAGTGGAGAATAATGCAGAAAAGCAATAGTTGCTTTGTCTGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGTGTGCGTGTATATCTG</pcr_primer_p1>
		<pcr_primer_p2>AAGATCAAATATCGGTATTCAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTT</canonical_amplicon>
		<polymorphic_amplicon>TTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAARTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7510</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>738037</contig_pos>
        <strand>+</strand>
        <context>GAATGAGTGA[A/T]GAACAAAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGA</left_flank>
        <right_flank>GAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGGGTCGCTGGCATCTCCTCCAGTCTCCTTCTCCTTGTCTTTTCGTGTGGTTTTGCTGATCTTTGGAAAATGCGCTGTAAAATTGTATATGTTTATCGTGCTATTTATAAAAAATCTATTTAAAAAAAAAAGAATCTGTGTTATTTGGGAAAAAAATGGAAAAACTAACAGTTTGTCTCATGAAACTCTTTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTCTTTTAATCATGGAACATGGAGTTCTTCGCGAAGATATCCAGTAAAATCGGTTTTGC</canonical>
            <polymorphic>GTGGGGTCGCTGGCATCTCCTCCAGTCTCCTTCTCCTTGTCTTTTCGTGTGGTTTTGCTGATCTTTGGAAAATGCGCTGTAAAATTGTATATGTTTATCGTGCTATTTATAAAAAATCTATTTAAAAAAAAAAGAATCTGTGTTATTTGGGAAAAAAATGGAAAAACTAACAGTTTGTCTCATGAAACTCTTTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGAWGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATTAAAAATTAAAATATGGTACGTCCAGTGGATTTTATTTTTCGGTTCAATATTCTTTTAATCATGGAACATGGAGTTCTTCGCGAAGATATCCAGTAAAATCGGTTTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAGACTAATGTGCGAGAG</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCCCAAATTCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGAWGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7512</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>737874</contig_pos>
        <strand>+</strand>
        <context>CCAACACTAT[C/T]GGAGAACAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTAT</left_flank>
        <right_flank>GGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTTACAAACTCATTTTCAACCGCAGCTGCGAGTTGGTCCTTGTTTCTGTCCTCTTCCGTTTTCCTATAAGATGATTTGATTGAGCTGGCTGCTTCAGAGATTTCCCGTGCTTGGTCGTGATGGTGGCAGTGGTGAGGAATGGCAATGGATCGGCGGGGTTTGTGGGGTCGCTGGCATCTCCTCCAGTCTCCTTCTCCTTGTCTTTTCGTGTGGTTTTGCTGATCTTTGGAAAATGCGCTGTAAAATTGTATATGTTTATCGTGCTATTTATAAAAAATCTATTTAAAAAAAAAAGAATCTGTGTTATTTGGGAAAAAAATGGAAAAACTAACAGTTTGTCTCATGAAACTCTTTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACC</canonical>
            <polymorphic>TACTTACAAACTCATTTTCAACCGCAGCTGCGAGTTGGTCCTTGTTTCTGTCCTCTTCCGTTTTCCTATAAGATGATTTGATTGAGCTGGCTGCTTCAGAGATTTCCCGTGCTTGGTCGTGATGGTGGCAGTGGTGAGGAATGGCAATGGATCGGCGGGGTTTGTGGGGTCGCTGGCATCTCCTCCAGTCTCCTTCTCCTTGTCTTTTCGTGTGGTTTTGCTGATCTTTGGAAAATGCGCTGTAAAATTGTATATGTTTATCGTGCTATTTATAAAAAATCTATTTAAAAAAAAAAGAATCTGTGTTATTTGGGAAAAAAATGGAAAAACTAACAGTTTGTCTCATGAAACTCTTTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATYGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>403 262 237 98</canonical_bands>
                <polymorphic_bands>665 237 98</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTGTCTCATGAAACTCTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTCCCCCTCTTTTCTCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTGTCTCATGAAACTCTTTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTGTCTCATGAAACTCTTTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATYGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7514</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>753926</contig_pos>
        <strand>+</strand>
        <context>AAATTTTTTT[A/G]AATCTGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTTTAGGAGTGTGAACTGGACGATTTCCATTGTGAGCAAAATTTTTTT</left_flank>
        <right_flank>AATCTGAAAAGTCTATTTAGAAAAGGAATCGGGGAGACAATAGGAATTAT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTGAAAAATTACAAATTAGAAAAAAAAATTAAAATAGAAAAAATAGGAAAATTTGAAAAATTTGAAAAAAAAATTAAAATAGAAAAAATAGAAAATTTAGAAAAAATGGAAAAAAGGAAAAAAATAGAAAATATAGAAAAAAGAGAAAAATTAGAAAAATAAGAAATTTAGAATTTTAAAAAATAGGAAAATTTGAAAAATTTGAAAAAAAATTAAAATAGAAAAAATTGAAAAATTTGAAAAATTAAACATTTGAAAAAAAATAGTGCCTAACCAGGTGGAGTTGTTCATAATGTAGTGTCATGTAGAATGACACTAGGTGTTATTAAGAGTCACAGATTAGAGTAGGGTTGATGAACAATGTAACATGTAGTGCGATTTGGATTCACACATTAGATACCAGATTTTATTACATCTATTCATTTACGAGTCTAGATGCACCTATTGTTTTAGGAGTGTGAACTGGACGATTTCCATTGTGAGCAAAATTTTTTTAAATCTGAAAAGTCTATTTAGAAAAGGAATCGGGGAGACAATAGGAATTATTGAGAAAAGTTGAAATTTCTGTATCTATAGAAGACAGGTCAGTAACTCTGCGATGATGAAATCAACGGTGGGTAAAAAGAAGTTGATTAAAACAATTTGGAATTACAAAATATATGATACGGGGGTACAAAATGCATGATTCAATTGTATTTTTCGTATCTTTGCGCTGAAATTTTACACCTAAATGAAGTTGCGACACATCTCCGAAATAAGTTCATACTAACATAAAATTCGAGTAAGGCGTTGCTGGCTCCCATTTAAAGTGCGAAAATTCAAATAATTCTTCAGTAAATAAGCTAAGTTTCAAGTAATTTGATAAACTTCAAGCTGAGTTATTGTTTCATCTCATGATCATCTCAAAAGCATACGTTTTTAGACAATTTTAAGAATACACAAACTTAAGGAATCGCTTTGAAAATATCACAAGCTATTATTTCATTCAAAAATTGT</canonical>
            <polymorphic>AAATTTGAAAAATTACAAATTAGAAAAAAAAATTAAAATAGAAAAAATAGGAAAATTTGAAAAATTTGAAAAAAAAATTAAAATAGAAAAAATAGAAAATTTAGAAAAAATGGAAAAAAGGAAAAAAATAGAAAATATAGAAAAAAGAGAAAAATTAGAAAAATAAGAAATTTAGAATTTTAAAAAATAGGAAAATTTGAAAAATTTGAAAAAAAATTAAAATAGAAAAAATTGAAAAATTTGAAAAATTAAACATTTGAAAAAAAATAGTGCCTAACCAGGTGGAGTTGTTCATAATGTAGTGTCATGTAGAATGACACTAGGTGTTATTAAGAGTCACAGATTAGAGTAGGGTTGATGAACAATGTAACATGTAGTGCGATTTGGATTCACACATTAGATACCAGATTTTATTACATCTATTCATTTACGAGTCTAGATGCACCTATTGTTTTAGGAGTGTGAACTGGACGATTTCCATTGTGAGCAAAATTTTTTTRAATCTGAAAAGTCTATTTAGAAAAGGAATCGGGGAGACAATAGGAATTATTGAGAAAAGTTGAAATTTCTGTATCTATAGAAGACAGGTCAGTAACTCTGCGATGATGAAATCAACGGTGGGTAAAAAGAAGTTGATTAAAACAATTTGGAATTACAAAATATATGATACGGGGGTACAAAATGCATGATTCAATTGTATTTTTCGTATCTTTGCGCTGAAATTTTACACCTAAATGAAGTTGCGACACATCTCCGAAATAAGTTCATACTAACATAAAATTCGAGTAAGGCGTTGCTGGCTCCCATTTAAAGTGCGAAAATTCAAATAATTCTTCAGTAAATAAGCTAAGTTTCAAGTAATTTGATAAACTTCAAGCTGAGTTATTGTTTCATCTCATGATCATCTCAAAAGCATACGTTTTTAGACAATTTTAAGAATACACAAACTTAAGGAATCGCTTTGAAAATATCACAAGCTATTATTTCATTCAAAAATTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>318 310 191 181</canonical_bands>
                <polymorphic_bands>628 191 181</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>171 168 139 125 102 81 51 45 37 33 32 16</canonical_bands>
                <polymorphic_bands>307 171 125 102 81 51 45 37 33 32 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGGGTTGATGAACAATGTAAC</pcr_primer_p1>
		<pcr_primer_p2>GCAGAGTTACTGACCTGTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GTAGGGTTGATGAACAATGTAACATGTAGTGCGATTTGGATTCACACATTAGATACCAGATTTTATTACATCTATTCATTTACGAGTCTAGATGCACCTATTGTTTTAGGAGTGTGAACTGGACGATTTCCATTGTGAGCAAAATTTTTTTAAATCTGAAAAGTCTATTTAGAAAAGGAATCGGGGAGACAATAGGAATTATTGAGAAAAGTTGAAATTTCTGTATCTATAGAAGACAGGTCAGTAACTCTGC</canonical_amplicon>
		<polymorphic_amplicon>GTAGGGTTGATGAACAATGTAACATGTAGTGCGATTTGGATTCACACATTAGATACCAGATTTTATTACATCTATTCATTTACGAGTCTAGATGCACCTATTGTTTTAGGAGTGTGAACTGGACGATTTCCATTGTGAGCAAAATTTTTTTRAATCTGAAAAGTCTATTTAGAAAAGGAATCGGGGAGACAATAGGAATTATTGAGAAAAGTTGAAATTTCTGTATCTATAGAAGACAGGTCAGTAACTCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7515</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>753956</contig_pos>
        <strand>+</strand>
        <context>GAAAAGGAAT[C/T]GGGGAGACAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGTGAGCAAAATTTTTTTAAATCTGAAAAGTCTATTTAGAAAAGGAAT</left_flank>
        <right_flank>GGGGAGACAATAGGAATTATTGAGAAAAGTTGAAATTTCTGTATCTATAG</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTAAAATAGAAAAAATAGGAAAATTTGAAAAATTTGAAAAAAAAATTAAAATAGAAAAAATAGAAAATTTAGAAAAAATGGAAAAAAGGAAAAAAATAGAAAATATAGAAAAAAGAGAAAAATTAGAAAAATAAGAAATTTAGAATTTTAAAAAATAGGAAAATTTGAAAAATTTGAAAAAAAATTAAAATAGAAAAAATTGAAAAATTTGAAAAATTAAACATTTGAAAAAAAATAGTGCCTAACCAGGTGGAGTTGTTCATAATGTAGTGTCATGTAGAATGACACTAGGTGTTATTAAGAGTCACAGATTAGAGTAGGGTTGATGAACAATGTAACATGTAGTGCGATTTGGATTCACACATTAGATACCAGATTTTATTACATCTATTCATTTACGAGTCTAGATGCACCTATTGTTTTAGGAGTGTGAACTGGACGATTTCCATTGTGAGCAAAATTTTTTTAAATCTGAAAAGTCTATTTAGAAAAGGAATCGGGGAGACAATAGGAATTATTGAGAAAAGTTGAAATTTCTGTATCTATAGAAGACAGGTCAGTAACTCTGCGATGATGAAATCAACGGTGGGTAAAAAGAAGTTGATTAAAACAATTTGGAATTACAAAATATATGATACGGGGGTACAAAATGCATGATTCAATTGTATTTTTCGTATCTTTGCGCTGAAATTTTACACCTAAATGAAGTTGCGACACATCTCCGAAATAAGTTCATACTAACATAAAATTCGAGTAAGGCGTTGCTGGCTCCCATTTAAAGTGCGAAAATTCAAATAATTCTTCAGTAAATAAGCTAAGTTTCAAGTAATTTGATAAACTTCAAGCTGAGTTATTGTTTCATCTCATGATCATCTCAAAAGCATACGTTTTTAGACAATTTTAAGAATACACAAACTTAAGGAATCGCTTTGAAAATATCACAAGCTATTATTTCATTCAAAAATTGTATTGTCCATTGGAAAACATTCAGATATCAC</canonical>
            <polymorphic>AATTAAAATAGAAAAAATAGGAAAATTTGAAAAATTTGAAAAAAAAATTAAAATAGAAAAAATAGAAAATTTAGAAAAAATGGAAAAAAGGAAAAAAATAGAAAATATAGAAAAAAGAGAAAAATTAGAAAAATAAGAAATTTAGAATTTTAAAAAATAGGAAAATTTGAAAAATTTGAAAAAAAATTAAAATAGAAAAAATTGAAAAATTTGAAAAATTAAACATTTGAAAAAAAATAGTGCCTAACCAGGTGGAGTTGTTCATAATGTAGTGTCATGTAGAATGACACTAGGTGTTATTAAGAGTCACAGATTAGAGTAGGGTTGATGAACAATGTAACATGTAGTGCGATTTGGATTCACACATTAGATACCAGATTTTATTACATCTATTCATTTACGAGTCTAGATGCACCTATTGTTTTAGGAGTGTGAACTGGACGATTTCCATTGTGAGCAAAATTTTTTTAAATCTGAAAAGTCTATTTAGAAAAGGAATYGGGGAGACAATAGGAATTATTGAGAAAAGTTGAAATTTCTGTATCTATAGAAGACAGGTCAGTAACTCTGCGATGATGAAATCAACGGTGGGTAAAAAGAAGTTGATTAAAACAATTTGGAATTACAAAATATATGATACGGGGGTACAAAATGCATGATTCAATTGTATTTTTCGTATCTTTGCGCTGAAATTTTACACCTAAATGAAGTTGCGACACATCTCCGAAATAAGTTCATACTAACATAAAATTCGAGTAAGGCGTTGCTGGCTCCCATTTAAAGTGCGAAAATTCAAATAATTCTTCAGTAAATAAGCTAAGTTTCAAGTAATTTGATAAACTTCAAGCTGAGTTATTGTTTCATCTCATGATCATCTCAAAAGCATACGTTTTTAGACAATTTTAAGAATACACAAACTTAAGGAATCGCTTTGAAAATATCACAAGCTATTATTTCATTCAAAAATTGTATTGTCCATTGGAAAACATTCAGATATCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>304 266 162 94 76 53 45</canonical_bands>
                <polymorphic_bands>304 266 256 76 53 45</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>357 266 162 139 76</canonical_bands>
                <polymorphic_bands>357 301 266 76</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGGGTTGATGAACAATGTAAC</pcr_primer_p1>
		<pcr_primer_p2>GCAGAGTTACTGACCTGTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GTAGGGTTGATGAACAATGTAACATGTAGTGCGATTTGGATTCACACATTAGATACCAGATTTTATTACATCTATTCATTTACGAGTCTAGATGCACCTATTGTTTTAGGAGTGTGAACTGGACGATTTCCATTGTGAGCAAAATTTTTTTAAATCTGAAAAGTCTATTTAGAAAAGGAATCGGGGAGACAATAGGAATTATTGAGAAAAGTTGAAATTTCTGTATCTATAGAAGACAGGTCAGTAACTCTGC</canonical_amplicon>
		<polymorphic_amplicon>GTAGGGTTGATGAACAATGTAACATGTAGTGCGATTTGGATTCACACATTAGATACCAGATTTTATTACATCTATTCATTTACGAGTCTAGATGCACCTATTGTTTTAGGAGTGTGAACTGGACGATTTCCATTGTGAGCAAAATTTTTTTAAATCTGAAAAGTCTATTTAGAAAAGGAATYGGGGAGACAATAGGAATTATTGAGAAAAGTTGAAATTTCTGTATCTATAGAAGACAGGTCAGTAACTCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7516</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>753992</contig_pos>
        <strand>+</strand>
        <context>AAAGTTGAAA[C/T]TTCTGTATCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTAGAAAAGGAATCGGGGAGACAATAGGAATTATTGAGAAAAGTTGAAA</left_flank>
        <right_flank>TTCTGTATCTATAGAAGACAGGTCAGTAACTCTGCGATGATGAAATCAAC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAAAAAAAATTAAAATAGAAAAAATAGAAAATTTAGAAAAAATGGAAAAAAGGAAAAAAATAGAAAATATAGAAAAAAGAGAAAAATTAGAAAAATAAGAAATTTAGAATTTTAAAAAATAGGAAAATTTGAAAAATTTGAAAAAAAATTAAAATAGAAAAAATTGAAAAATTTGAAAAATTAAACATTTGAAAAAAAATAGTGCCTAACCAGGTGGAGTTGTTCATAATGTAGTGTCATGTAGAATGACACTAGGTGTTATTAAGAGTCACAGATTAGAGTAGGGTTGATGAACAATGTAACATGTAGTGCGATTTGGATTCACACATTAGATACCAGATTTTATTACATCTATTCATTTACGAGTCTAGATGCACCTATTGTTTTAGGAGTGTGAACTGGACGATTTCCATTGTGAGCAAAATTTTTTTAAATCTGAAAAGTCTATTTAGAAAAGGAATCGGGGAGACAATAGGAATTATTGAGAAAAGTTGAAATTTCTGTATCTATAGAAGACAGGTCAGTAACTCTGCGATGATGAAATCAACGGTGGGTAAAAAGAAGTTGATTAAAACAATTTGGAATTACAAAATATATGATACGGGGGTACAAAATGCATGATTCAATTGTATTTTTCGTATCTTTGCGCTGAAATTTTACACCTAAATGAAGTTGCGACACATCTCCGAAATAAGTTCATACTAACATAAAATTCGAGTAAGGCGTTGCTGGCTCCCATTTAAAGTGCGAAAATTCAAATAATTCTTCAGTAAATAAGCTAAGTTTCAAGTAATTTGATAAACTTCAAGCTGAGTTATTGTTTCATCTCATGATCATCTCAAAAGCATACGTTTTTAGACAATTTTAAGAATACACAAACTTAAGGAATCGCTTTGAAAATATCACAAGCTATTATTTCATTCAAAAATTGTATTGTCCATTGGAAAACATTCAGATATCACAAACCAACTCACCATTTTGCTCATTAACTTCTAACT</canonical>
            <polymorphic>TGAAAAAAAAATTAAAATAGAAAAAATAGAAAATTTAGAAAAAATGGAAAAAAGGAAAAAAATAGAAAATATAGAAAAAAGAGAAAAATTAGAAAAATAAGAAATTTAGAATTTTAAAAAATAGGAAAATTTGAAAAATTTGAAAAAAAATTAAAATAGAAAAAATTGAAAAATTTGAAAAATTAAACATTTGAAAAAAAATAGTGCCTAACCAGGTGGAGTTGTTCATAATGTAGTGTCATGTAGAATGACACTAGGTGTTATTAAGAGTCACAGATTAGAGTAGGGTTGATGAACAATGTAACATGTAGTGCGATTTGGATTCACACATTAGATACCAGATTTTATTACATCTATTCATTTACGAGTCTAGATGCACCTATTGTTTTAGGAGTGTGAACTGGACGATTTCCATTGTGAGCAAAATTTTTTTAAATCTGAAAAGTCTATTTAGAAAAGGAATCGGGGAGACAATAGGAATTATTGAGAAAAGTTGAAAYTTCTGTATCTATAGAAGACAGGTCAGTAACTCTGCGATGATGAAATCAACGGTGGGTAAAAAGAAGTTGATTAAAACAATTTGGAATTACAAAATATATGATACGGGGGTACAAAATGCATGATTCAATTGTATTTTTCGTATCTTTGCGCTGAAATTTTACACCTAAATGAAGTTGCGACACATCTCCGAAATAAGTTCATACTAACATAAAATTCGAGTAAGGCGTTGCTGGCTCCCATTTAAAGTGCGAAAATTCAAATAATTCTTCAGTAAATAAGCTAAGTTTCAAGTAATTTGATAAACTTCAAGCTGAGTTATTGTTTCATCTCATGATCATCTCAAAAGCATACGTTTTTAGACAATTTTAAGAATACACAAACTTAAGGAATCGCTTTGAAAATATCACAAGCTATTATTTCATTCAAAAATTGTATTGTCCATTGGAAAACATTCAGATATCACAAACCAACTCACCATTTTGCTCATTAACTTCTAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>253 247 157 73 71 58 41 35 31 18 9 7</canonical_bands>
                <polymorphic_bands>253 247 230 71 58 41 35 31 18 9 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>244 80 72 69 66 58 55 54 42 41 31 28 22 19 18 16 15 12 9 9 9 9 8 7 7</canonical_bands>
                <polymorphic_bands>244 99 72 69 66 58 55 54 42 41 31 28 22 18 16 15 12 9 9 9 9 8 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTGTGAACTGGACGATTT</pcr_primer_p1>
		<pcr_primer_p2>GGACAATACAATTTTTGAATGAA</pcr_primer_p2>
		<pcr_amplicon_size>550</pcr_amplicon_size>
		<canonical_amplicon>GAGTGTGAACTGGACGATTTCCATTGTGAGCAAAATTTTTTTAAATCTGAAAAGTCTATTTAGAAAAGGAATCGGGGAGACAATAGGAATTATTGAGAAAAGTTGAAATTTCTGTATCTATAGAAGACAGGTCAGTAACTCTGCGATGATGAAATCAACGGTGGGTAAAAAGAAGTTGATTAAAACAATTTGGAATTACAAAATATATGATACGGGGGTACAAAATGCATGATTCAATTGTATTTTTCGTATCTTTGCGCTGAAATTTTACACCTAAATGAAGTTGCGACACATCTCCGAAATAAGTTCATACTAACATAAAATTCGAGTAAGGCGTTGCTGGCTCCCATTTAAAGTGCGAAAATTCAAATAATTCTTCAGTAAATAAGCTAAGTTTCAAGTAATTTGATAAACTTCAAGCTGAGTTATTGTTTCATCTCATGATCATCTCAAAAGCATACGTTTTTAGACAATTTTAAGAATACACAAACTTAAGGAATCGCTTTGAAAATATCACAAGCTATTATTTCATTCAAAAATTGTATTGTCC</canonical_amplicon>
		<polymorphic_amplicon>GAGTGTGAACTGGACGATTTCCATTGTGAGCAAAATTTTTTTAAATCTGAAAAGTCTATTTAGAAAAGGAATCGGGGAGACAATAGGAATTATTGAGAAAAGTTGAAAYTTCTGTATCTATAGAAGACAGGTCAGTAACTCTGCGATGATGAAATCAACGGTGGGTAAAAAGAAGTTGATTAAAACAATTTGGAATTACAAAATATATGATACGGGGGTACAAAATGCATGATTCAATTGTATTTTTCGTATCTTTGCGCTGAAATTTTACACCTAAATGAAGTTGCGACACATCTCCGAAATAAGTTCATACTAACATAAAATTCGAGTAAGGCGTTGCTGGCTCCCATTTAAAGTGCGAAAATTCAAATAATTCTTCAGTAAATAAGCTAAGTTTCAAGTAATTTGATAAACTTCAAGCTGAGTTATTGTTTCATCTCATGATCATCTCAAAAGCATACGTTTTTAGACAATTTTAAGAATACACAAACTTAAGGAATCGCTTTGAAAATATCACAAGCTATTATTTCATTCAAAAATTGTATTGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7517</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>754256</contig_pos>
        <strand></strand>
        <context>aattcaaata[A/T]ttcttcagta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTCGAGTAAGGCGTTGCTGGCTCCCATTTAAAGTGCGAAAATTCAAATA</left_flank>
        <right_flank>TTCTTCAGTAAATAAGCTAAGTTTCAAGTAATTTGATAAACTTCAAGCTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAGAGTCACAGATTAGAGTAGGGTTGATGAACAATGTAACATGTAGTGCGATTTGGATTCACACATTAGATACCAGATTTTATTACATCTATTCATTTACGAGTCTAGATGCACCTATTGTTTTAGGAGTGTGAACTGGACGATTTCCATTGTGAGCAAAATTTTTTTAAATCTGAAAAGTCTATTTAGAAAAGGAATCGGGGAGACAATAGGAATTATTGAGAAAAGTTGAAATTTCTGTATCTATAGAAGACAGGTCAGTAACTCTGCGATGATGAAATCAACGGTGGGTAAAAAGAAGTTGATTAAAACAATTTGGAATTACAAAATATATGATACGGGGGTACAAAATGCATGATTCAATTGTATTTTTCGTATCTTTGCGCTGAAATTTTACACCTAAATGAAGTTGCGACACATCTCCGAAATAAGTTCATACTAACATAAAATTCGAGTAAGGCGTTGCTGGCTCCCATTTAAAGTGCGAAAATTCAAATAATTCTTCAGTAAATAAGCTAAGTTTCAAGTAATTTGATAAACTTCAAGCTGAGTTATTGTTTCATCTCATGATCATCTCAAAAGCATACGTTTTTAGACAATTTTAAGAATACACAAACTTAAGGAATCGCTTTGAAAATATCACAAGCTATTATTTCATTCAAAAATTGTATTGTCCATTGGAAAACATTCAGATATCACAAACCAACTCACCATTTTGCTCATTAACTTCTAACTACAATGAATATTAAAAAGTTCATTTATTTGAAACCAATTCTTCGATGTCAATTCGAACTACGACTCCAGTTTTTTTTTTCGTAGAGAAAAAATAATACAACAATAAACTTTTTAAATGTTTTTTTAAGAAATCATAGTAATAACATTTTATTGATTTAAATTTAAAACTTCAACAAACTCCAGTATATTGACAAATTTGATTGAAGTGTGCATACACGGAGGTAATTATTGTTTTGAACGGATCAGAGCCTTCAGTGCAACTAG</canonical>
            <polymorphic>TAAGAGTCACAGATTAGAGTAGGGTTGATGAACAATGTAACATGTAGTGCGATTTGGATTCACACATTAGATACCAGATTTTATTACATCTATTCATTTACGAGTCTAGATGCACCTATTGTTTTAGGAGTGTGAACTGGACGATTTCCATTGTGAGCAAAATTTTTTTAAATCTGAAAAGTCTATTTAGAAAAGGAATCGGGGAGACAATAGGAATTATTGAGAAAAGTTGAAATTTCTGTATCTATAGAAGACAGGTCAGTAACTCTGCGATGATGAAATCAACGGTGGGTAAAAAGAAGTTGATTAAAACAATTTGGAATTACAAAATATATGATACGGGGGTACAAAATGCATGATTCAATTGTATTTTTCGTATCTTTGCGCTGAAATTTTACACCTAAATGAAGTTGCGACACATCTCCGAAATAAGTTCATACTAACATAAAATTCGAGTAAGGCGTTGCTGGCTCCCATTTAAAGTGCGAAAATTCAAATAWTTCTTCAGTAAATAAGCTAAGTTTCAAGTAATTTGATAAACTTCAAGCTGAGTTATTGTTTCATCTCATGATCATCTCAAAAGCATACGTTTTTAGACAATTTTAAGAATACACAAACTTAAGGAATCGCTTTGAAAATATCACAAGCTATTATTTCATTCAAAAATTGTATTGTCCATTGGAAAACATTCAGATATCACAAACCAACTCACCATTTTGCTCATTAACTTCTAACTACAATGAATATTAAAAAGTTCATTTATTTGAAACCAATTCTTCGATGTCAATTCGAACTACGACTCCAGTTTTTTTTTTCGTAGAGAAAAAATAATACAACAATAAACTTTTTAAATGTTTTTTTAAGAAATCATAGTAATAACATTTTATTGATTTAAATTTAAAACTTCAACAAACTCCAGTATATTGACAAATTTGATTGAAGTGTGCATACACGGAGGTAATTATTGTTTTGAACGGATCAGAGCCTTCAGTGCAACTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>160 109 107 80 69 66 58 54 42 41 41 35 31 30 28 19 14 9 7</canonical_bands>
                <polymorphic_bands>160 109 107 80 69 66 58 54 42 41 41 40 35 30 28 19 14 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAACTCTGCGATGATGAAATC</pcr_primer_p1>
		<pcr_primer_p2>GGACAATACAATTTTTGAATGAA</pcr_primer_p2>
		<pcr_amplicon_size>415</pcr_amplicon_size>
		<canonical_amplicon>TAACTCTGCGATGATGAAATCAACGGTGGGTAAAAAGAAGTTGATTAAAACAATTTGGAATTACAAAATATATGATACGGGGGTACAAAATGCATGATTCAATTGTATTTTTCGTATCTTTGCGCTGAAATTTTACACCTAAATGAAGTTGCGACACATCTCCGAAATAAGTTCATACTAACATAAAATTCGAGTAAGGCGTTGCTGGCTCCCATTTAAAGTGCGAAAATTCAAATAATTCTTCAGTAAATAAGCTAAGTTTCAAGTAATTTGATAAACTTCAAGCTGAGTTATTGTTTCATCTCATGATCATCTCAAAAGCATACGTTTTTAGACAATTTTAAGAATACACAAACTTAAGGAATCGCTTTGAAAATATCACAAGCTATTATTTCATTCAAAAATTGTATTGTCC</canonical_amplicon>
		<polymorphic_amplicon>TAACTCTGCGATGATGAAATCAACGGTGGGTAAAAAGAAGTTGATTAAAACAATTTGGAATTACAAAATATATGATACGGGGGTACAAAATGCATGATTCAATTGTATTTTTCGTATCTTTGCGCTGAAATTTTACACCTAAATGAAGTTGCGACACATCTCCGAAATAAGTTCATACTAACATAAAATTCGAGTAAGGCGTTGCTGGCTCCCATTTAAAGTGCGAAAATTCAAATAWTTCTTCAGTAAATAAGCTAAGTTTCAAGTAATTTGATAAACTTCAAGCTGAGTTATTGTTTCATCTCATGATCATCTCAAAAGCATACGTTTTTAGACAATTTTAAGAATACACAAACTTAAGGAATCGCTTTGAAAATATCACAAGCTATTATTTCATTCAAAAATTGTATTGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7518</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>754318</contig_pos>
        <strand></strand>
        <context>gttattgttt[C/A]atctcatkat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATAAGCTAAGTTTCAAGTAATTTGATAAACTTCAAGCTGAGTTATTGTTT</left_flank>
        <right_flank>ATCTCATGATCATCTCAAAAGCATACGTTTTTAGACAATTTTAAGAATAC</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACATTAGATACCAGATTTTATTACATCTATTCATTTACGAGTCTAGATGCACCTATTGTTTTAGGAGTGTGAACTGGACGATTTCCATTGTGAGCAAAATTTTTTTAAATCTGAAAAGTCTATTTAGAAAAGGAATCGGGGAGACAATAGGAATTATTGAGAAAAGTTGAAATTTCTGTATCTATAGAAGACAGGTCAGTAACTCTGCGATGATGAAATCAACGGTGGGTAAAAAGAAGTTGATTAAAACAATTTGGAATTACAAAATATATGATACGGGGGTACAAAATGCATGATTCAATTGTATTTTTCGTATCTTTGCGCTGAAATTTTACACCTAAATGAAGTTGCGACACATCTCCGAAATAAGTTCATACTAACATAAAATTCGAGTAAGGCGTTGCTGGCTCCCATTTAAAGTGCGAAAATTCAAATAATTCTTCAGTAAATAAGCTAAGTTTCAAGTAATTTGATAAACTTCAAGCTGAGTTATTGTTTCATCTCATGATCATCTCAAAAGCATACGTTTTTAGACAATTTTAAGAATACACAAACTTAAGGAATCGCTTTGAAAATATCACAAGCTATTATTTCATTCAAAAATTGTATTGTCCATTGGAAAACATTCAGATATCACAAACCAACTCACCATTTTGCTCATTAACTTCTAACTACAATGAATATTAAAAAGTTCATTTATTTGAAACCAATTCTTCGATGTCAATTCGAACTACGACTCCAGTTTTTTTTTTCGTAGAGAAAAAATAATACAACAATAAACTTTTTAAATGTTTTTTTAAGAAATCATAGTAATAACATTTTATTGATTTAAATTTAAAACTTCAACAAACTCCAGTATATTGACAAATTTGATTGAAGTGTGCATACACGGAGGTAATTATTGTTTTGAACGGATCAGAGCCTTCAGTGCAACTAGCCACTCCAATGACAAAGTGTCTTCCGTTGACGTCATTAATCACACTTCCACCACTGTCACCC</canonical>
            <polymorphic>CACATTAGATACCAGATTTTATTACATCTATTCATTTACGAGTCTAGATGCACCTATTGTTTTAGGAGTGTGAACTGGACGATTTCCATTGTGAGCAAAATTTTTTTAAATCTGAAAAGTCTATTTAGAAAAGGAATCGGGGAGACAATAGGAATTATTGAGAAAAGTTGAAATTTCTGTATCTATAGAAGACAGGTCAGTAACTCTGCGATGATGAAATCAACGGTGGGTAAAAAGAAGTTGATTAAAACAATTTGGAATTACAAAATATATGATACGGGGGTACAAAATGCATGATTCAATTGTATTTTTCGTATCTTTGCGCTGAAATTTTACACCTAAATGAAGTTGCGACACATCTCCGAAATAAGTTCATACTAACATAAAATTCGAGTAAGGCGTTGCTGGCTCCCATTTAAAGTGCGAAAATTCAAATAATTCTTCAGTAAATAAGCTAAGTTTCAAGTAATTTGATAAACTTCAAGCTGAGTTATTGTTTMATCTCATGATCATCTCAAAAGCATACGTTTTTAGACAATTTTAAGAATACACAAACTTAAGGAATCGCTTTGAAAATATCACAAGCTATTATTTCATTCAAAAATTGTATTGTCCATTGGAAAACATTCAGATATCACAAACCAACTCACCATTTTGCTCATTAACTTCTAACTACAATGAATATTAAAAAGTTCATTTATTTGAAACCAATTCTTCGATGTCAATTCGAACTACGACTCCAGTTTTTTTTTTCGTAGAGAAAAAATAATACAACAATAAACTTTTTAAATGTTTTTTTAAGAAATCATAGTAATAACATTTTATTGATTTAAATTTAAAACTTCAACAAACTCCAGTATATTGACAAATTTGATTGAAGTGTGCATACACGGAGGTAATTATTGTTTTGAACGGATCAGAGCCTTCAGTGCAACTAGCCACTCCAATGACAAAGTGTCTTCCGTTGACGTCATTAATCACACTTCCACCACTGTCACCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACTCTGCGATGATGAAATC</pcr_primer_p1>
		<pcr_primer_p2>GGACAATACAATTTTTGAATGAA</pcr_primer_p2>
		<pcr_amplicon_size>415</pcr_amplicon_size>
		<canonical_amplicon>TAACTCTGCGATGATGAAATCAACGGTGGGTAAAAAGAAGTTGATTAAAACAATTTGGAATTACAAAATATATGATACGGGGGTACAAAATGCATGATTCAATTGTATTTTTCGTATCTTTGCGCTGAAATTTTACACCTAAATGAAGTTGCGACACATCTCCGAAATAAGTTCATACTAACATAAAATTCGAGTAAGGCGTTGCTGGCTCCCATTTAAAGTGCGAAAATTCAAATAATTCTTCAGTAAATAAGCTAAGTTTCAAGTAATTTGATAAACTTCAAGCTGAGTTATTGTTTCATCTCATGATCATCTCAAAAGCATACGTTTTTAGACAATTTTAAGAATACACAAACTTAAGGAATCGCTTTGAAAATATCACAAGCTATTATTTCATTCAAAAATTGTATTGTCC</canonical_amplicon>
		<polymorphic_amplicon>TAACTCTGCGATGATGAAATCAACGGTGGGTAAAAAGAAGTTGATTAAAACAATTTGGAATTACAAAATATATGATACGGGGGTACAAAATGCATGATTCAATTGTATTTTTCGTATCTTTGCGCTGAAATTTTACACCTAAATGAAGTTGCGACACATCTCCGAAATAAGTTCATACTAACATAAAATTCGAGTAAGGCGTTGCTGGCTCCCATTTAAAGTGCGAAAATTCAAATAATTCTTCAGTAAATAAGCTAAGTTTCAAGTAATTTGATAAACTTCAAGCTGAGTTATTGTTTMATCTCATGATCATCTCAAAAGCATACGTTTTTAGACAATTTTAAGAATACACAAACTTAAGGAATCGCTTTGAAAATATCACAAGCTATTATTTCATTCAAAAATTGTATTGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7519</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>754326</contig_pos>
        <strand></strand>
        <context>ttmatctcat[G/T]atcatctcaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGTTTCAAGTAATTTGATAAACTTCAAGCTGAGTTATTGTTTCATCTCAT</left_flank>
        <right_flank>ATCATCTCAAAAGCATACGTTTTTAGACAATTTTAAGAATACACAAACTT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATACCAGATTTTATTACATCTATTCATTTACGAGTCTAGATGCACCTATTGTTTTAGGAGTGTGAACTGGACGATTTCCATTGTGAGCAAAATTTTTTTAAATCTGAAAAGTCTATTTAGAAAAGGAATCGGGGAGACAATAGGAATTATTGAGAAAAGTTGAAATTTCTGTATCTATAGAAGACAGGTCAGTAACTCTGCGATGATGAAATCAACGGTGGGTAAAAAGAAGTTGATTAAAACAATTTGGAATTACAAAATATATGATACGGGGGTACAAAATGCATGATTCAATTGTATTTTTCGTATCTTTGCGCTGAAATTTTACACCTAAATGAAGTTGCGACACATCTCCGAAATAAGTTCATACTAACATAAAATTCGAGTAAGGCGTTGCTGGCTCCCATTTAAAGTGCGAAAATTCAAATAATTCTTCAGTAAATAAGCTAAGTTTCAAGTAATTTGATAAACTTCAAGCTGAGTTATTGTTTCATCTCATGATCATCTCAAAAGCATACGTTTTTAGACAATTTTAAGAATACACAAACTTAAGGAATCGCTTTGAAAATATCACAAGCTATTATTTCATTCAAAAATTGTATTGTCCATTGGAAAACATTCAGATATCACAAACCAACTCACCATTTTGCTCATTAACTTCTAACTACAATGAATATTAAAAAGTTCATTTATTTGAAACCAATTCTTCGATGTCAATTCGAACTACGACTCCAGTTTTTTTTTTCGTAGAGAAAAAATAATACAACAATAAACTTTTTAAATGTTTTTTTAAGAAATCATAGTAATAACATTTTATTGATTTAAATTTAAAACTTCAACAAACTCCAGTATATTGACAAATTTGATTGAAGTGTGCATACACGGAGGTAATTATTGTTTTGAACGGATCAGAGCCTTCAGTGCAACTAGCCACTCCAATGACAAAGTGTCTTCCGTTGACGTCATTAATCACACTTCCACCACTGTCACCCTGTACAAT</canonical>
            <polymorphic>ATACCAGATTTTATTACATCTATTCATTTACGAGTCTAGATGCACCTATTGTTTTAGGAGTGTGAACTGGACGATTTCCATTGTGAGCAAAATTTTTTTAAATCTGAAAAGTCTATTTAGAAAAGGAATCGGGGAGACAATAGGAATTATTGAGAAAAGTTGAAATTTCTGTATCTATAGAAGACAGGTCAGTAACTCTGCGATGATGAAATCAACGGTGGGTAAAAAGAAGTTGATTAAAACAATTTGGAATTACAAAATATATGATACGGGGGTACAAAATGCATGATTCAATTGTATTTTTCGTATCTTTGCGCTGAAATTTTACACCTAAATGAAGTTGCGACACATCTCCGAAATAAGTTCATACTAACATAAAATTCGAGTAAGGCGTTGCTGGCTCCCATTTAAAGTGCGAAAATTCAAATAATTCTTCAGTAAATAAGCTAAGTTTCAAGTAATTTGATAAACTTCAAGCTGAGTTATTGTTTCATCTCATKATCATCTCAAAAGCATACGTTTTTAGACAATTTTAAGAATACACAAACTTAAGGAATCGCTTTGAAAATATCACAAGCTATTATTTCATTCAAAAATTGTATTGTCCATTGGAAAACATTCAGATATCACAAACCAACTCACCATTTTGCTCATTAACTTCTAACTACAATGAATATTAAAAAGTTCATTTATTTGAAACCAATTCTTCGATGTCAATTCGAACTACGACTCCAGTTTTTTTTTTCGTAGAGAAAAAATAATACAACAATAAACTTTTTAAATGTTTTTTTAAGAAATCATAGTAATAACATTTTATTGATTTAAATTTAAAACTTCAACAAACTCCAGTATATTGACAAATTTGATTGAAGTGTGCATACACGGAGGTAATTATTGTTTTGAACGGATCAGAGCCTTCAGTGCAACTAGCCACTCCAATGACAAAGTGTCTTCCGTTGACGTCATTAATCACACTTCCACCACTGTCACCCTGTACAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>499 407 94</canonical_bands>
                <polymorphic_bands>906 94</polymorphic_bands>
            </assay>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 285 212</canonical_bands>
                <polymorphic_bands>715 285</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>503 461 36</canonical_bands>
                <polymorphic_bands>964 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAACTCTGCGATGATGAAATC</pcr_primer_p1>
		<pcr_primer_p2>GGACAATACAATTTTTGAATGAA</pcr_primer_p2>
		<pcr_amplicon_size>415</pcr_amplicon_size>
		<canonical_amplicon>TAACTCTGCGATGATGAAATCAACGGTGGGTAAAAAGAAGTTGATTAAAACAATTTGGAATTACAAAATATATGATACGGGGGTACAAAATGCATGATTCAATTGTATTTTTCGTATCTTTGCGCTGAAATTTTACACCTAAATGAAGTTGCGACACATCTCCGAAATAAGTTCATACTAACATAAAATTCGAGTAAGGCGTTGCTGGCTCCCATTTAAAGTGCGAAAATTCAAATAATTCTTCAGTAAATAAGCTAAGTTTCAAGTAATTTGATAAACTTCAAGCTGAGTTATTGTTTCATCTCATGATCATCTCAAAAGCATACGTTTTTAGACAATTTTAAGAATACACAAACTTAAGGAATCGCTTTGAAAATATCACAAGCTATTATTTCATTCAAAAATTGTATTGTCC</canonical_amplicon>
		<polymorphic_amplicon>TAACTCTGCGATGATGAAATCAACGGTGGGTAAAAAGAAGTTGATTAAAACAATTTGGAATTACAAAATATATGATACGGGGGTACAAAATGCATGATTCAATTGTATTTTTCGTATCTTTGCGCTGAAATTTTACACCTAAATGAAGTTGCGACACATCTCCGAAATAAGTTCATACTAACATAAAATTCGAGTAAGGCGTTGCTGGCTCCCATTTAAAGTGCGAAAATTCAAATAATTCTTCAGTAAATAAGCTAAGTTTCAAGTAATTTGATAAACTTCAAGCTGAGTTATTGTTTCATCTCATKATCATCTCAAAAGCATACGTTTTTAGACAATTTTAAGAATACACAAACTTAAGGAATCGCTTTGAAAATATCACAAGCTATTATTTCATTCAAAAATTGTATTGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7523</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>79638</contig_pos>
        <strand>+</strand>
        <context>TAAACTAAAT[A/T]AAAAATTCCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAAACGAGATTCCAATTCTTCATTTTTTTCCAGAAAATTAAACTAAAT</left_flank>
        <right_flank>AAAAATTCCCGCCGGAAAAATAGCATGTCTTTCAAAAAAGGGGTCTATGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCCATATAACTGTACTAAAGTAAGAACAATCGAAAGTTGCATCAGAATTACAGAACTCTCAATTTTGATATTGAGAGCTAAATTTTTTGATTAGATCACAAACGAAAATTCTAAATGTATAAATTTCTGTTTCGGAAGGTTTATAAGTTTTTCAGAAAAATTTTTGGTTAAATAATATTCTTGGTAATTGCGAAGCTATTTGACTAAATATAGAAGATGGAATTGATACTTGCGTACTGTAACTTAAGAAAAAAATCATTAAAATCGCCTGTCTCCTCTCTTTCTTATGAGGTTATTCAGGGAGTCGGCAAAAAAGGAAAAAAAAACTCCGCGAAAACTCGGAGAGTGTTCCAATCTGGCTGAAACTTTGGGGAAAATTGGNNNNNNNNNNTGCTTACGGTGATGTCTCGAAAAAACTAGTGCACAAAAACTGAATCTTTCAAAAAAAAAACGAGATTCCAATTCTTCATTTTTTTCCAGAAAATTAAACTAAATAAAAAATTCCCGCCGGAAAAATAGCATGTCTTTCAAAAAAGGGGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCCGCAAGATAAACCCATCTACCAAATGGGCTCTTTTTTGGAGGATGGGGGGAAATTTGCACTGCTCAGACTGGATTAGGTTACTAATTGAATTTCTGAATTCTGGTCTCTTTATTTTTTAGTTTAGCCAGAAAAAAGGAAAGAAAAAACAACAAAATAAAGAAGAAGAATTTATTAAAACGAGCAGTTTTTTTTGAGAAAATTTGGCATACATTGAAAACTTTTTAAAGGCAAAAACCGGTTTACACACATTTTAAGACACTAGATTCTAGCAAAACATTAGGAGAAAAAAGGAAAATAAAAGCTCTAATGTAAGTATTATTTAAATAAGTATCTATCCAAAAATATGGGTCGAATCAGAGAAATGTACATGTATTGTTGAGAAGAGAGAGAGA</canonical>
            <polymorphic>TTTTTCCATATAACTGTACTAAAGTAAGAACAATCGAAAGTTGCATCAGAATTACAGAACTCTCAATTTTGATATTGAGAGCTAAATTTTTTGATTAGATCACAAACGAAAATTCTAAATGTATAAATTTCTGTTTCGGAAGGTTTATAAGTTTTTCAGAAAAATTTTTGGTTAAATAATATTCTTGGTAATTGCGAAGCTATTTGACTAAATATAGAAGATGGAATTGATACTTGCGTACTGTAACTTAAGAAAAAAATCATTAAAATCGCCTGTCTCCTCTCTTTCTTATGAGGTTATTCAGGGAGTCGGCAAAAAAGGAAAAAAAAACTCCGCGAAAACTCGGAGAGTGTTCCAATCTGGCTGAAACTTTGGGGAAAATTGGNNNNNNNNNNTGCTTACGGTGATGTCTCGAAAAAACTAGTGCACAAAAACTGAATCTTTCAAAAAAAAAACGAGATTCCAATTCTTCATTTTTTTCCAGAAAATTAAACTAAATWAAAAATTCCCGCCGGAAAAATAGCATGTCTTTCAAAAAAGGGGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCCGCAAGATAAACCCATCTACCAAATGGGCTCTTTTTTGGAGGATGGGGGGAAATTTGCACTGCTCAGACTGGATTAGGTTACTAATTGAATTTCTGAATTCTGGTCTCTTTATTTTTTAGTTTAGCCAGAAAAAAGGAAAGAAAAAACAACAAAATAAAGAAGAAGAATTTATTAAAACGAGCAGTTTTTTTTGAGAAAATTTGGCATACATTGAAAACTTTTTAAAGGCAAAAACCGGTTTACACACATTTTAAGACACTAGATTCTAGCAAAACATTAGGAGAAAAAAGGAAAATAAAAGCTCTAATGTAAGTATTATTTAAATAAGTATCTATCCAAAAATATGGGTCGAATCAGAGAAATGTACATGTATTGTTGAGAAGAGAGAGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTAGTGCACAAAAACTGAATC</pcr_primer_p1>
		<pcr_primer_p2>CATTTGGTAGATGGGTTTATCT</pcr_primer_p2>
		<pcr_amplicon_size>215</pcr_amplicon_size>
		<canonical_amplicon>AACTAGTGCACAAAAACTGAATCTTTCAAAAAAAAAACGAGATTCCAATTCTTCATTTTTTTCCAGAAAATTAAACTAAATAAAAAATTCCCGCCGGAAAAATAGCATGTCTTTCAAAAAAGGGGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCCGCAAGATAAACCCATCTACCAAATG</canonical_amplicon>
		<polymorphic_amplicon>AACTAGTGCACAAAAACTGAATCTTTCAAAAAAAAAACGAGATTCCAATTCTTCATTTTTTTCCAGAAAATTAAACTAAATWAAAAATTCCCGCCGGAAAAATAGCATGTCTTTCAAAAAAGGGGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCCGCAAGATAAACCCATCTACCAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7524</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>79660</contig_pos>
        <strand>+</strand>
        <context>CCGGAAAAAT[A/C]GCATGTCTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATTTTTTTCCAGAAAATTAAACTAAATAAAAAATTCCCGCCGGAAAAAT</left_flank>
        <right_flank>GCATGTCTTTCAAAAAAGGGGTCTATGTCGGTCCATTAGAATTTCGAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTAAGAACAATCGAAAGTTGCATCAGAATTACAGAACTCTCAATTTTGATATTGAGAGCTAAATTTTTTGATTAGATCACAAACGAAAATTCTAAATGTATAAATTTCTGTTTCGGAAGGTTTATAAGTTTTTCAGAAAAATTTTTGGTTAAATAATATTCTTGGTAATTGCGAAGCTATTTGACTAAATATAGAAGATGGAATTGATACTTGCGTACTGTAACTTAAGAAAAAAATCATTAAAATCGCCTGTCTCCTCTCTTTCTTATGAGGTTATTCAGGGAGTCGGCAAAAAAGGAAAAAAAAACTCCGCGAAAACTCGGAGAGTGTTCCAATCTGGCTGAAACTTTGGGGAAAATTGGNNNNNNNNNNTGCTTACGGTGATGTCTCGAAAAAACTAGTGCACAAAAACTGAATCTTTCAAAAAAAAAACGAGATTCCAATTCTTCATTTTTTTCCAGAAAATTAAACTAAATAAAAAATTCCCGCCGGAAAAATAGCATGTCTTTCAAAAAAGGGGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCCGCAAGATAAACCCATCTACCAAATGGGCTCTTTTTTGGAGGATGGGGGGAAATTTGCACTGCTCAGACTGGATTAGGTTACTAATTGAATTTCTGAATTCTGGTCTCTTTATTTTTTAGTTTAGCCAGAAAAAAGGAAAGAAAAAACAACAAAATAAAGAAGAAGAATTTATTAAAACGAGCAGTTTTTTTTGAGAAAATTTGGCATACATTGAAAACTTTTTAAAGGCAAAAACCGGTTTACACACATTTTAAGACACTAGATTCTAGCAAAACATTAGGAGAAAAAAGGAAAATAAAAGCTCTAATGTAAGTATTATTTAAATAAGTATCTATCCAAAAATATGGGTCGAATCAGAGAAATGTACATGTATTGTTGAGAAGAGAGAGAGAGAGAAGAACCAAAAAGGAGGGA</canonical>
            <polymorphic>AGTAAGAACAATCGAAAGTTGCATCAGAATTACAGAACTCTCAATTTTGATATTGAGAGCTAAATTTTTTGATTAGATCACAAACGAAAATTCTAAATGTATAAATTTCTGTTTCGGAAGGTTTATAAGTTTTTCAGAAAAATTTTTGGTTAAATAATATTCTTGGTAATTGCGAAGCTATTTGACTAAATATAGAAGATGGAATTGATACTTGCGTACTGTAACTTAAGAAAAAAATCATTAAAATCGCCTGTCTCCTCTCTTTCTTATGAGGTTATTCAGGGAGTCGGCAAAAAAGGAAAAAAAAACTCCGCGAAAACTCGGAGAGTGTTCCAATCTGGCTGAAACTTTGGGGAAAATTGGNNNNNNNNNNTGCTTACGGTGATGTCTCGAAAAAACTAGTGCACAAAAACTGAATCTTTCAAAAAAAAAACGAGATTCCAATTCTTCATTTTTTTCCAGAAAATTAAACTAAATAAAAAATTCCCGCCGGAAAAATMGCATGTCTTTCAAAAAAGGGGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCCGCAAGATAAACCCATCTACCAAATGGGCTCTTTTTTGGAGGATGGGGGGAAATTTGCACTGCTCAGACTGGATTAGGTTACTAATTGAATTTCTGAATTCTGGTCTCTTTATTTTTTAGTTTAGCCAGAAAAAAGGAAAGAAAAAACAACAAAATAAAGAAGAAGAATTTATTAAAACGAGCAGTTTTTTTTGAGAAAATTTGGCATACATTGAAAACTTTTTAAAGGCAAAAACCGGTTTACACACATTTTAAGACACTAGATTCTAGCAAAACATTAGGAGAAAAAAGGAAAATAAAAGCTCTAATGTAAGTATTATTTAAATAAGTATCTATCCAAAAATATGGGTCGAATCAGAGAAATGTACATGTATTGTTGAGAAGAGAGAGAGAGAGAAGAACCAAAAAGGAGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTAGTGCACAAAAACTGAATC</pcr_primer_p1>
		<pcr_primer_p2>CATTTGGTAGATGGGTTTATCT</pcr_primer_p2>
		<pcr_amplicon_size>215</pcr_amplicon_size>
		<canonical_amplicon>AACTAGTGCACAAAAACTGAATCTTTCAAAAAAAAAACGAGATTCCAATTCTTCATTTTTTTCCAGAAAATTAAACTAAATAAAAAATTCCCGCCGGAAAAATAGCATGTCTTTCAAAAAAGGGGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCCGCAAGATAAACCCATCTACCAAATG</canonical_amplicon>
		<polymorphic_amplicon>AACTAGTGCACAAAAACTGAATCTTTCAAAAAAAAAACGAGATTCCAATTCTTCATTTTTTTCCAGAAAATTAAACTAAATAAAAAATTCCCGCCGGAAAAATMGCATGTCTTTCAAAAAAGGGGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCCGCAAGATAAACCCATCTACCAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7527</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>79747</contig_pos>
        <strand>+</strand>
        <context>CGATGGAGCC[A/G]CAAGATAAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCC</left_flank>
        <right_flank>CAAGATAAACCCATCTACCAAATGGGCTCTTTTTTGGAGGATGGGGGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTCTAAATGTATAAATTTCTGTTTCGGAAGGTTTATAAGTTTTTCAGAAAAATTTTTGGTTAAATAATATTCTTGGTAATTGCGAAGCTATTTGACTAAATATAGAAGATGGAATTGATACTTGCGTACTGTAACTTAAGAAAAAAATCATTAAAATCGCCTGTCTCCTCTCTTTCTTATGAGGTTATTCAGGGAGTCGGCAAAAAAGGAAAAAAAAACTCCGCGAAAACTCGGAGAGTGTTCCAATCTGGCTGAAACTTTGGGGAAAATTGGNNNNNNNNNNTGCTTACGGTGATGTCTCGAAAAAACTAGTGCACAAAAACTGAATCTTTCAAAAAAAAAACGAGATTCCAATTCTTCATTTTTTTCCAGAAAATTAAACTAAATAAAAAATTCCCGCCGGAAAAATAGCATGTCTTTCAAAAAAGGGGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCCGCAAGATAAACCCATCTACCAAATGGGCTCTTTTTTGGAGGATGGGGGGAAATTTGCACTGCTCAGACTGGATTAGGTTACTAATTGAATTTCTGAATTCTGGTCTCTTTATTTTTTAGTTTAGCCAGAAAAAAGGAAAGAAAAAACAACAAAATAAAGAAGAAGAATTTATTAAAACGAGCAGTTTTTTTTGAGAAAATTTGGCATACATTGAAAACTTTTTAAAGGCAAAAACCGGTTTACACACATTTTAAGACACTAGATTCTAGCAAAACATTAGGAGAAAAAAGGAAAATAAAAGCTCTAATGTAAGTATTATTTAAATAAGTATCTATCCAAAAATATGGGTCGAATCAGAGAAATGTACATGTATTGTTGAGAAGAGAGAGAGAGAGAAGAACCAAAAAGGAGGGATACAGTTGATTTTTTTATCTCCGAGATAAAACACCGTGAATTGCACCGATTTTCGTAAGGGCATCATTTGATGTTCCAGGTGATAAT</canonical>
            <polymorphic>AAATTCTAAATGTATAAATTTCTGTTTCGGAAGGTTTATAAGTTTTTCAGAAAAATTTTTGGTTAAATAATATTCTTGGTAATTGCGAAGCTATTTGACTAAATATAGAAGATGGAATTGATACTTGCGTACTGTAACTTAAGAAAAAAATCATTAAAATCGCCTGTCTCCTCTCTTTCTTATGAGGTTATTCAGGGAGTCGGCAAAAAAGGAAAAAAAAACTCCGCGAAAACTCGGAGAGTGTTCCAATCTGGCTGAAACTTTGGGGAAAATTGGNNNNNNNNNNTGCTTACGGTGATGTCTCGAAAAAACTAGTGCACAAAAACTGAATCTTTCAAAAAAAAAACGAGATTCCAATTCTTCATTTTTTTCCAGAAAATTAAACTAAATAAAAAATTCCCGCCGGAAAAATAGCATGTCTTTCAAAAAAGGGGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCCRCAAGATAAACCCATCTACCAAATGGGCTCTTTTTTGGAGGATGGGGGGAAATTTGCACTGCTCAGACTGGATTAGGTTACTAATTGAATTTCTGAATTCTGGTCTCTTTATTTTTTAGTTTAGCCAGAAAAAAGGAAAGAAAAAACAACAAAATAAAGAAGAAGAATTTATTAAAACGAGCAGTTTTTTTTGAGAAAATTTGGCATACATTGAAAACTTTTTAAAGGCAAAAACCGGTTTACACACATTTTAAGACACTAGATTCTAGCAAAACATTAGGAGAAAAAAGGAAAATAAAAGCTCTAATGTAAGTATTATTTAAATAAGTATCTATCCAAAAATATGGGTCGAATCAGAGAAATGTACATGTATTGTTGAGAAGAGAGAGAGAGAGAAGAACCAAAAAGGAGGGATACAGTTGATTTTTTTATCTCCGAGATAAAACACCGTGAATTGCACCGATTTTCGTAAGGGCATCATTTGATGTTCCAGGTGATAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>502 224 176 98</canonical_bands>
                <polymorphic_bands>600 224 176</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTCTATGTCGGTCCATTAG</pcr_primer_p1>
		<pcr_primer_p2>TGCTCGTTTTAATAAATTCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCCGCAAGATAAACCCATCTACCAAATGGGCTCTTTTTTGGAGGATGGGGGGAAATTTGCACTGCTCAGACTGGATTAGGTTACTAATTGAATTTCTGAATTCTGGTCTCTTTATTTTTTAGTTTAGCCAGAAAAAAGGAAAGAAAAAACAACAAAATAAAGAAGAAGAATTTATTAAAACGAGCA</canonical_amplicon>
		<polymorphic_amplicon>GGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCCRCAAGATAAACCCATCTACCAAATGGGCTCTTTTTTGGAGGATGGGGGGAAATTTGCACTGCTCAGACTGGATTAGGTTACTAATTGAATTTCTGAATTCTGGTCTCTTTATTTTTTAGTTTAGCCAGAAAAAAGGAAAGAAAAAACAACAAAATAAAGAAGAAGAATTTATTAAAACGAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7528</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>79865</contig_pos>
        <strand>+</strand>
        <context>TTATTTTTTA[A/G]TTTAGCCAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGATTAGGTTACTAATTGAATTTCTGAATTCTGGTCTCTTTATTTTTTA</left_flank>
        <right_flank>TTTAGCCAGAAAAAAGGAAAGAAAAAACAACAAAATAAAGAAGAAGAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATACTTGCGTACTGTAACTTAAGAAAAAAATCATTAAAATCGCCTGTCTCCTCTCTTTCTTATGAGGTTATTCAGGGAGTCGGCAAAAAAGGAAAAAAAAACTCCGCGAAAACTCGGAGAGTGTTCCAATCTGGCTGAAACTTTGGGGAAAATTGGNNNNNNNNNNTGCTTACGGTGATGTCTCGAAAAAACTAGTGCACAAAAACTGAATCTTTCAAAAAAAAAACGAGATTCCAATTCTTCATTTTTTTCCAGAAAATTAAACTAAATAAAAAATTCCCGCCGGAAAAATAGCATGTCTTTCAAAAAAGGGGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCCGCAAGATAAACCCATCTACCAAATGGGCTCTTTTTTGGAGGATGGGGGGAAATTTGCACTGCTCAGACTGGATTAGGTTACTAATTGAATTTCTGAATTCTGGTCTCTTTATTTTTTAGTTTAGCCAGAAAAAAGGAAAGAAAAAACAACAAAATAAAGAAGAAGAATTTATTAAAACGAGCAGTTTTTTTTGAGAAAATTTGGCATACATTGAAAACTTTTTAAAGGCAAAAACCGGTTTACACACATTTTAAGACACTAGATTCTAGCAAAACATTAGGAGAAAAAAGGAAAATAAAAGCTCTAATGTAAGTATTATTTAAATAAGTATCTATCCAAAAATATGGGTCGAATCAGAGAAATGTACATGTATTGTTGAGAAGAGAGAGAGAGAGAAGAACCAAAAAGGAGGGATACAGTTGATTTTTTTATCTCCGAGATAAAACACCGTGAATTGCACCGATTTTCGTAAGGGCATCATTTGATGTTCCAGGTGATAATGAGAGAGAAAGACTACGATGTTGAGGAGATGATGATGGAGATGTCAGAAGCTGAAAATAGGTTTTTAAAATAGTGTAGGAATCGAGGAGAGTGTAGAGAAAAGATACTGTAAAAACTG</canonical>
            <polymorphic>TGATACTTGCGTACTGTAACTTAAGAAAAAAATCATTAAAATCGCCTGTCTCCTCTCTTTCTTATGAGGTTATTCAGGGAGTCGGCAAAAAAGGAAAAAAAAACTCCGCGAAAACTCGGAGAGTGTTCCAATCTGGCTGAAACTTTGGGGAAAATTGGNNNNNNNNNNTGCTTACGGTGATGTCTCGAAAAAACTAGTGCACAAAAACTGAATCTTTCAAAAAAAAAACGAGATTCCAATTCTTCATTTTTTTCCAGAAAATTAAACTAAATAAAAAATTCCCGCCGGAAAAATAGCATGTCTTTCAAAAAAGGGGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCCGCAAGATAAACCCATCTACCAAATGGGCTCTTTTTTGGAGGATGGGGGGAAATTTGCACTGCTCAGACTGGATTAGGTTACTAATTGAATTTCTGAATTCTGGTCTCTTTATTTTTTARTTTAGCCAGAAAAAAGGAAAGAAAAAACAACAAAATAAAGAAGAAGAATTTATTAAAACGAGCAGTTTTTTTTGAGAAAATTTGGCATACATTGAAAACTTTTTAAAGGCAAAAACCGGTTTACACACATTTTAAGACACTAGATTCTAGCAAAACATTAGGAGAAAAAAGGAAAATAAAAGCTCTAATGTAAGTATTATTTAAATAAGTATCTATCCAAAAATATGGGTCGAATCAGAGAAATGTACATGTATTGTTGAGAAGAGAGAGAGAGAGAAGAACCAAAAAGGAGGGATACAGTTGATTTTTTTATCTCCGAGATAAAACACCGTGAATTGCACCGATTTTCGTAAGGGCATCATTTGATGTTCCAGGTGATAATGAGAGAGAAAGACTACGATGTTGAGGAGATGATGATGGAGATGTCAGAAGCTGAAAATAGGTTTTTAAAATAGTGTAGGAATCGAGGAGAGTGTAGAGAAAAGATACTGTAAAAACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCTATGTCGGTCCATTAG</pcr_primer_p1>
		<pcr_primer_p2>TGCTCGTTTTAATAAATTCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCCGCAAGATAAACCCATCTACCAAATGGGCTCTTTTTTGGAGGATGGGGGGAAATTTGCACTGCTCAGACTGGATTAGGTTACTAATTGAATTTCTGAATTCTGGTCTCTTTATTTTTTAGTTTAGCCAGAAAAAAGGAAAGAAAAAACAACAAAATAAAGAAGAAGAATTTATTAAAACGAGCA</canonical_amplicon>
		<polymorphic_amplicon>GGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCCGCAAGATAAACCCATCTACCAAATGGGCTCTTTTTTGGAGGATGGGGGGAAATTTGCACTGCTCAGACTGGATTAGGTTACTAATTGAATTTCTGAATTCTGGTCTCTTTATTTTTTARTTTAGCCAGAAAAAAGGAAAGAAAAAACAACAAAATAAAGAAGAAGAATTTATTAAAACGAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7529</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>81600</contig_pos>
        <strand>+</strand>
        <context>TCGGGTGTCA[A/C]AACATCCTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCTACCGACTGAACCGCGAGCGCTGAGCTAGAGCGGTCGATCGGGTGTCA</left_flank>
        <right_flank>AACATCCTAGTTTTACAAATATATGCCAACCACAACAACGAACTTCCAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATTAATCGCATAGACTGGCATGGACTTAGTTTTACATTTTCCATCTCCAAAAAATCAATTCTCACCTCGGCTCTCGTCAATACTCCTTGTCGAAGACCCAGTGCCAATGGTTGATGATCTCCAGGCGACGTCTTCAGATTCTGAATCATTCTGACGCCATAAGCAACACTGAAGTCGGTCCAACTAGTGTCATGTGATTGACGTCGGTTCTGGAAACCGCGCAGAAGTTTAGAAAGGGACACAGCAAATTATGAGGCTACAGGCAGTGTTAGTCGGAGAGACCAAGGGAACTACCGAAAGTTAGTAAACTCTGGAAGACGTTGAGAGTTTACAGGTTTTTATGGTCTTGAGACATTAAAAAAAAAAGTAATTTTTTCAAAATTTTTTCATTTGTGTAAGCCTCTCGAGGAGTTGAACTTGTGGGACGAGTATGGGAGGTGCAACGCCGCTACCGACTGAACCGCGAGCGCTGAGCTAGAGCGGTCGATCGGGTGTCAAAACATCCTAGTTTTACAAATATATGCCAACCACAACAACGAACTTCCAGAATTACGATAGAAAAAAGGAAAATAGAAGAAACCATCTACCTGACTACTACCGAAAAACTGTTGCTGATCGATACCTTTCCGTTGACAAAACGCTGCAAACTCTTTTTGCACCTGAAACTAACACAAACATTTCGAGAGTTAGTATAAAGCTCGGAGTTAGAAGTCACCTCTTCCCTAGCCTTGATAATTTTCAAGGAGATATCCAGATCACGAGTTCCAGGCATTCCCGGTTGTCCGAGTTTTGGCTCAGCGTAGGACGAATTGTCTTCGATTGGTTGTTTGGTGGACATCGAAGGCATGTCGACGCTGTGAGCATGTGGGCGGTTGCCTGAAGAAGGAATTGTTAAACTCAGGTTGTCCCGTTTAGTATTATGCAAGTTTAAATTTATAGTAAATAATTTATAATTTTGCCAAAATAATTGGAAGTGAGGCAGTCTGAAACAACACCAG</canonical>
            <polymorphic>CCATTAATCGCATAGACTGGCATGGACTTAGTTTTACATTTTCCATCTCCAAAAAATCAATTCTCACCTCGGCTCTCGTCAATACTCCTTGTCGAAGACCCAGTGCCAATGGTTGATGATCTCCAGGCGACGTCTTCAGATTCTGAATCATTCTGACGCCATAAGCAACACTGAAGTCGGTCCAACTAGTGTCATGTGATTGACGTCGGTTCTGGAAACCGCGCAGAAGTTTAGAAAGGGACACAGCAAATTATGAGGCTACAGGCAGTGTTAGTCGGAGAGACCAAGGGAACTACCGAAAGTTAGTAAACTCTGGAAGACGTTGAGAGTTTACAGGTTTTTATGGTCTTGAGACATTAAAAAAAAAAGTAATTTTTTCAAAATTTTTTCATTTGTGTAAGCCTCTCGAGGAGTTGAACTTGTGGGACGAGTATGGGAGGTGCAACGCCGCTACCGACTGAACCGCGAGCGCTGAGCTAGAGCGGTCGATCGGGTGTCAMAACATCCTAGTTTTACAAATATATGCCAACCACAACAACGAACTTCCAGAATTACGATAGAAAAAAGGAAAATAGAAGAAACCATCTACCTGACTACTACCGAAAAACTGTTGCTGATCGATACCTTTCCGTTGACAAAACGCTGCAAACTCTTTTTGCACCTGAAACTAACACAAACATTTCGAGAGTTAGTATAAAGCTCGGAGTTAGAAGTCACCTCTTCCCTAGCCTTGATAATTTTCAAGGAGATATCCAGATCACGAGTTCCAGGCATTCCCGGTTGTCCGAGTTTTGGCTCAGCGTAGGACGAATTGTCTTCGATTGGTTGTTTGGTGGACATCGAAGGCATGTCGACGCTGTGAGCATGTGGGCGGTTGCCTGAAGAAGGAATTGTTAAACTCAGGTTGTCCCGTTTAGTATTATGCAAGTTTAAATTTATAGTAAATAATTTATAATTTTGCCAAAATAATTGGAAGTGAGGCAGTCTGAAACAACACCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACAGGTTTTTATGGTCTTGAG</pcr_primer_p1>
		<pcr_primer_p2>TGGTTTCTTCTATTTTCCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTACAGGTTTTTATGGTCTTGAGACATTAAAAAAAAAAGTAATTTTTTCAAAATTTTTTCATTTGTGTAAGCCTCTCGAGGAGTTGAACTTGTGGGACGAGTATGGGAGGTGCAACGCCGCTACCGACTGAACCGCGAGCGCTGAGCTAGAGCGGTCGATCGGGTGTCAAAACATCCTAGTTTTACAAATATATGCCAACCACAACAACGAACTTCCAGAATTACGATAGAAAAAAGGAAAATAGAAGAAACCA</canonical_amplicon>
		<polymorphic_amplicon>TTACAGGTTTTTATGGTCTTGAGACATTAAAAAAAAAAGTAATTTTTTCAAAATTTTTTCATTTGTGTAAGCCTCTCGAGGAGTTGAACTTGTGGGACGAGTATGGGAGGTGCAACGCCGCTACCGACTGAACCGCGAGCGCTGAGCTAGAGCGGTCGATCGGGTGTCAMAACATCCTAGTTTTACAAATATATGCCAACCACAACAACGAACTTCCAGAATTACGATAGAAAAAAGGAAAATAGAAGAAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7555</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>81497</contig_pos>
        <strand></strand>
        <context>TTTcatttgt[G/C]taagcctctc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TCTTGAGACATTAAAAAAAAAAGTAATTTTTTCAAAATTTTTTCATTTGT</left_flank>
        <right_flank>TAAGCCTCTCGAGGAGTTGAACTTGTGGGACGAGTATGGGAGGTGCAACG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGAGATAATTGAGCTCCAAGTTAAAGTATTGGACATTTACGAAATATGGAACAATTTAGTTTCCTATAGAAATTTTTTGTAAATTTCCCGTTTCTAGTTTTCCATTAATCGCATAGACTGGCATGGACTTAGTTTTACATTTTCCATCTCCAAAAAATCAATTCTCACCTCGGCTCTCGTCAATACTCCTTGTCGAAGACCCAGTGCCAATGGTTGATGATCTCCAGGCGACGTCTTCAGATTCTGAATCATTCTGACGCCATAAGCAACACTGAAGTCGGTCCAACTAGTGTCATGTGATTGACGTCGGTTCTGGAAACCGCGCAGAAGTTTAGAAAGGGACACAGCAAATTATGAGGCTACAGGCAGTGTTAGTCGGAGAGACCAAGGGAACTACCGAAAGTTAGTAAACTCTGGAAGACGTTGAGAGTTTACAGGTTTTTATGGTCTTGAGACATTAAAAAAAAAAGTAATTTTTTCAAAATTTTTTCATTTGTGTAAGCCTCTCGAGGAGTTGAACTTGTGGGACGAGTATGGGAGGTGCAACGCCGCTACCGACTGAACCGCGAGCGCTGAGCTAGAGCGGTCGATCGGGTGTCAAAACATCCTAGTTTTACAAATATATGCCAACCACAACAACGAACTTCCAGAATTACGATAGAAAAAAGGAAAATAGAAGAAACCATCTACCTGACTACTACCGAAAAACTGTTGCTGATCGATACCTTTCCGTTGACAAAACGCTGCAAACTCTTTTTGCACCTGAAACTAACACAAACATTTCGAGAGTTAGTATAAAGCTCGGAGTTAGAAGTCACCTCTTCCCTAGCCTTGATAATTTTCAAGGAGATATCCAGATCACGAGTTCCAGGCATTCCCGGTTGTCCGAGTTTTGGCTCAGCGTAGGACGAATTGTCTTCGATTGGTTGTTTGGTGGACATCGAAGGCATGTCGACGCTGTGAGCATGTGGGCGGTTGCCTGAAGAAGGAATTGTTAA</canonical>
            <polymorphic>GGAGAGATAATTGAGCTCCAAGTTAAAGTATTGGACATTTACGAAATATGGAACAATTTAGTTTCCTATAGAAATTTTTTGTAAATTTCCCGTTTCTAGTTTTCCATTAATCGCATAGACTGGCATGGACTTAGTTTTACATTTTCCATCTCCAAAAAATCAATTCTCACCTCGGCTCTCGTCAATACTCCTTGTCGAAGACCCAGTGCCAATGGTTGATGATCTCCAGGCGACGTCTTCAGATTCTGAATCATTCTGACGCCATAAGCAACACTGAAGTCGGTCCAACTAGTGTCATGTGATTGACGTCGGTTCTGGAAACCGCGCAGAAGTTTAGAAAGGGACACAGCAAATTATGAGGCTACAGGCAGTGTTAGTCGGAGAGACCAAGGGAACTACCGAAAGTTAGTAAACTCTGGAAGACGTTGAGAGTTTACAGGTTTTTATGGTCTTGAGACATTAAAAAAAAAAGTAATTTTTTCAAAATTTTTTCATTTGTSTAAGCCTCTCGAGGAGTTGAACTTGTGGGACGAGTATGGGAGGTGCAACGCCGCTACCGACTGAACCGCGAGCGCTGAGCTAGAGCGGTCGATCGGGTGTCAAAACATCCTAGTTTTACAAATATATGCCAACCACAACAACGAACTTCCAGAATTACGATAGAAAAAAGGAAAATAGAAGAAACCATCTACCTGACTACTACCGAAAAACTGTTGCTGATCGATACCTTTCCGTTGACAAAACGCTGCAAACTCTTTTTGCACCTGAAACTAACACAAACATTTCGAGAGTTAGTATAAAGCTCGGAGTTAGAAGTCACCTCTTCCCTAGCCTTGATAATTTTCAAGGAGATATCCAGATCACGAGTTCCAGGCATTCCCGGTTGTCCGAGTTTTGGCTCAGCGTAGGACGAATTGTCTTCGATTGGTTGTTTGGTGGACATCGAAGGCATGTCGACGCTGTGAGCATGTGGGCGGTTGCCTGAAGAAGGAATTGTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>169 128 127 75 65 54 45 44 43 39 36 28 27 27 26 21 18 13 8 7</canonical_bands>
                <polymorphic_bands>169 154 128 75 65 54 45 44 43 39 36 28 27 26 21 18 13 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACAGGTTTTTATGGTCTTGAG</pcr_primer_p1>
		<pcr_primer_p2>TGGTTTCTTCTATTTTCCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTACAGGTTTTTATGGTCTTGAGACATTAAAAAAAAAAGTAATTTTTTCAAAATTTTTTCATTTGTGTAAGCCTCTCGAGGAGTTGAACTTGTGGGACGAGTATGGGAGGTGCAACGCCGCTACCGACTGAACCGCGAGCGCTGAGCTAGAGCGGTCGATCGGGTGTCAAAACATCCTAGTTTTACAAATATATGCCAACCACAACAACGAACTTCCAGAATTACGATAGAAAAAAGGAAAATAGAAGAAACCA</canonical_amplicon>
		<polymorphic_amplicon>TTACAGGTTTTTATGGTCTTGAGACATTAAAAAAAAAAGTAATTTTTTCAAAATTTTTTCATTTGTSTAAGCCTCTCGAGGAGTTGAACTTGTGGGACGAGTATGGGAGGTGCAACGCCGCTACCGACTGAACCGCGAGCGCTGAGCTAGAGCGGTCGATCGGGTGTCAAAACATCCTAGTTTTACAAATATATGCCAACCACAACAACGAACTTCCAGAATTACGATAGAAAAAAGGAAAATAGAAGAAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7566</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>81408</contig_pos>
        <strand>+</strand>
        <context>GAAAGTTAGT[A/G]AACTCTGGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTACAGGCAGTGTTAGTCGGAGAGACCAAGGGAACTACCGAAAGTTAGT</left_flank>
        <right_flank>AACTCTGGAAGACGTTGAGAGTTTACAGGTTTTTATGGTCTTGAGACATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTTCAAAACTGTGACAACTGATAAGATTTTTGTGATATTATGATAAACATTTCATTAGTGGACATATTTTTGATATCTCTTCTAGAAGGAGAGATAATTGAGCTCCAAGTTAAAGTATTGGACATTTACGAAATATGGAACAATTTAGTTTCCTATAGAAATTTTTTGTAAATTTCCCGTTTCTAGTTTTCCATTAATCGCATAGACTGGCATGGACTTAGTTTTACATTTTCCATCTCCAAAAAATCAATTCTCACCTCGGCTCTCGTCAATACTCCTTGTCGAAGACCCAGTGCCAATGGTTGATGATCTCCAGGCGACGTCTTCAGATTCTGAATCATTCTGACGCCATAAGCAACACTGAAGTCGGTCCAACTAGTGTCATGTGATTGACGTCGGTTCTGGAAACCGCGCAGAAGTTTAGAAAGGGACACAGCAAATTATGAGGCTACAGGCAGTGTTAGTCGGAGAGACCAAGGGAACTACCGAAAGTTAGTAAACTCTGGAAGACGTTGAGAGTTTACAGGTTTTTATGGTCTTGAGACATTAAAAAAAAAAGTAATTTTTTCAAAATTTTTTCATTTGTGTAAGCCTCTCGAGGAGTTGAACTTGTGGGACGAGTATGGGAGGTGCAACGCCGCTACCGACTGAACCGCGAGCGCTGAGCTAGAGCGGTCGATCGGGTGTCAAAACATCCTAGTTTTACAAATATATGCCAACCACAACAACGAACTTCCAGAATTACGATAGAAAAAAGGAAAATAGAAGAAACCATCTACCTGACTACTACCGAAAAACTGTTGCTGATCGATACCTTTCCGTTGACAAAACGCTGCAAACTCTTTTTGCACCTGAAACTAACACAAACATTTCGAGAGTTAGTATAAAGCTCGGAGTTAGAAGTCACCTCTTCCCTAGCCTTGATAATTTTCAAGGAGATATCCAGATCACGAGTTCCAGGCATTCCCGGTTGTCCGAGTTTTGGCTCAGCGTAGGAC</canonical>
            <polymorphic>GGTTTCAAAACTGTGACAACTGATAAGATTTTTGTGATATTATGATAAACATTTCATTAGTGGACATATTTTTGATATCTCTTCTAGAAGGAGAGATAATTGAGCTCCAAGTTAAAGTATTGGACATTTACGAAATATGGAACAATTTAGTTTCCTATAGAAATTTTTTGTAAATTTCCCGTTTCTAGTTTTCCATTAATCGCATAGACTGGCATGGACTTAGTTTTACATTTTCCATCTCCAAAAAATCAATTCTCACCTCGGCTCTCGTCAATACTCCTTGTCGAAGACCCAGTGCCAATGGTTGATGATCTCCAGGCGACGTCTTCAGATTCTGAATCATTCTGACGCCATAAGCAACACTGAAGTCGGTCCAACTAGTGTCATGTGATTGACGTCGGTTCTGGAAACCGCGCAGAAGTTTAGAAAGGGACACAGCAAATTATGAGGCTACAGGCAGTGTTAGTCGGAGAGACCAAGGGAACTACCGAAAGTTAGTRAACTCTGGAAGACGTTGAGAGTTTACAGGTTTTTATGGTCTTGAGACATTAAAAAAAAAAGTAATTTTTTCAAAATTTTTTCATTTGTGTAAGCCTCTCGAGGAGTTGAACTTGTGGGACGAGTATGGGAGGTGCAACGCCGCTACCGACTGAACCGCGAGCGCTGAGCTAGAGCGGTCGATCGGGTGTCAAAACATCCTAGTTTTACAAATATATGCCAACCACAACAACGAACTTCCAGAATTACGATAGAAAAAAGGAAAATAGAAGAAACCATCTACCTGACTACTACCGAAAAACTGTTGCTGATCGATACCTTTCCGTTGACAAAACGCTGCAAACTCTTTTTGCACCTGAAACTAACACAAACATTTCGAGAGTTAGTATAAAGCTCGGAGTTAGAAGTCACCTCTTCCCTAGCCTTGATAATTTTCAAGGAGATATCCAGATCACGAGTTCCAGGCATTCCCGGTTGTCCGAGTTTTGGCTCAGCGTAGGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGAGGCTACAGGCAGTGT</pcr_primer_p1>
		<pcr_primer_p2>TGGCATATATTTGTAAAACTAGGA</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>TATGAGGCTACAGGCAGTGTTAGTCGGAGAGACCAAGGGAACTACCGAAAGTTAGTAAACTCTGGAAGACGTTGAGAGTTTACAGGTTTTTATGGTCTTGAGACATTAAAAAAAAAAGTAATTTTTTCAAAATTTTTTCATTTGTGTAAGCCTCTCGAGGAGTTGAACTTGTGGGACGAGTATGGGAGGTGCAACGCCGCTACCGACTGAACCGCGAGCGCTGAGCTAGAGCGGTCGATCGGGTGTCAAAACATCCTAGTTTTACAAATATATGCCA</canonical_amplicon>
		<polymorphic_amplicon>TATGAGGCTACAGGCAGTGTTAGTCGGAGAGACCAAGGGAACTACCGAAAGTTAGTRAACTCTGGAAGACGTTGAGAGTTTACAGGTTTTTATGGTCTTGAGACATTAAAAAAAAAAGTAATTTTTTCAAAATTTTTTCATTTGTGTAAGCCTCTCGAGGAGTTGAACTTGTGGGACGAGTATGGGAGGTGCAACGCCGCTACCGACTGAACCGCGAGCGCTGAGCTAGAGCGGTCGATCGGGTGTCAAAACATCCTAGTTTTACAAATATATGCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7567</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>81376</contig_pos>
        <strand>+</strand>
        <context>CAGTGTTAGT[C/G]GGAGAGACCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAAGTTTAGAAAGGGACACAGCAAATTATGAGGCTACAGGCAGTGTTAGT</left_flank>
        <right_flank>GGAGAGACCAAGGGAACTACCGAAAGTTAGTAAACTCTGGAAGACGTTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGAGCTCAATTATATCAGTTTCGGTAAGAGGTTTCAAAACTGTGACAACTGATAAGATTTTTGTGATATTATGATAAACATTTCATTAGTGGACATATTTTTGATATCTCTTCTAGAAGGAGAGATAATTGAGCTCCAAGTTAAAGTATTGGACATTTACGAAATATGGAACAATTTAGTTTCCTATAGAAATTTTTTGTAAATTTCCCGTTTCTAGTTTTCCATTAATCGCATAGACTGGCATGGACTTAGTTTTACATTTTCCATCTCCAAAAAATCAATTCTCACCTCGGCTCTCGTCAATACTCCTTGTCGAAGACCCAGTGCCAATGGTTGATGATCTCCAGGCGACGTCTTCAGATTCTGAATCATTCTGACGCCATAAGCAACACTGAAGTCGGTCCAACTAGTGTCATGTGATTGACGTCGGTTCTGGAAACCGCGCAGAAGTTTAGAAAGGGACACAGCAAATTATGAGGCTACAGGCAGTGTTAGTCGGAGAGACCAAGGGAACTACCGAAAGTTAGTAAACTCTGGAAGACGTTGAGAGTTTACAGGTTTTTATGGTCTTGAGACATTAAAAAAAAAAGTAATTTTTTCAAAATTTTTTCATTTGTGTAAGCCTCTCGAGGAGTTGAACTTGTGGGACGAGTATGGGAGGTGCAACGCCGCTACCGACTGAACCGCGAGCGCTGAGCTAGAGCGGTCGATCGGGTGTCAAAACATCCTAGTTTTACAAATATATGCCAACCACAACAACGAACTTCCAGAATTACGATAGAAAAAAGGAAAATAGAAGAAACCATCTACCTGACTACTACCGAAAAACTGTTGCTGATCGATACCTTTCCGTTGACAAAACGCTGCAAACTCTTTTTGCACCTGAAACTAACACAAACATTTCGAGAGTTAGTATAAAGCTCGGAGTTAGAAGTCACCTCTTCCCTAGCCTTGATAATTTTCAAGGAGATATCCAGATCACGAGTTCCAGGCATTC</canonical>
            <polymorphic>TTTTGAGCTCAATTATATCAGTTTCGGTAAGAGGTTTCAAAACTGTGACAACTGATAAGATTTTTGTGATATTATGATAAACATTTCATTAGTGGACATATTTTTGATATCTCTTCTAGAAGGAGAGATAATTGAGCTCCAAGTTAAAGTATTGGACATTTACGAAATATGGAACAATTTAGTTTCCTATAGAAATTTTTTGTAAATTTCCCGTTTCTAGTTTTCCATTAATCGCATAGACTGGCATGGACTTAGTTTTACATTTTCCATCTCCAAAAAATCAATTCTCACCTCGGCTCTCGTCAATACTCCTTGTCGAAGACCCAGTGCCAATGGTTGATGATCTCCAGGCGACGTCTTCAGATTCTGAATCATTCTGACGCCATAAGCAACACTGAAGTCGGTCCAACTAGTGTCATGTGATTGACGTCGGTTCTGGAAACCGCGCAGAAGTTTAGAAAGGGACACAGCAAATTATGAGGCTACAGGCAGTGTTAGTSGGAGAGACCAAGGGAACTACCGAAAGTTAGTAAACTCTGGAAGACGTTGAGAGTTTACAGGTTTTTATGGTCTTGAGACATTAAAAAAAAAAGTAATTTTTTCAAAATTTTTTCATTTGTGTAAGCCTCTCGAGGAGTTGAACTTGTGGGACGAGTATGGGAGGTGCAACGCCGCTACCGACTGAACCGCGAGCGCTGAGCTAGAGCGGTCGATCGGGTGTCAAAACATCCTAGTTTTACAAATATATGCCAACCACAACAACGAACTTCCAGAATTACGATAGAAAAAAGGAAAATAGAAGAAACCATCTACCTGACTACTACCGAAAAACTGTTGCTGATCGATACCTTTCCGTTGACAAAACGCTGCAAACTCTTTTTGCACCTGAAACTAACACAAACATTTCGAGAGTTAGTATAAAGCTCGGAGTTAGAAGTCACCTCTTCCCTAGCCTTGATAATTTTCAAGGAGATATCCAGATCACGAGTTCCAGGCATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>426 362 123 73 10 6</canonical_bands>
                <polymorphic_bands>549 362 73 10 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCAATACTCCTTGTCGAAGA</pcr_primer_p1>
		<pcr_primer_p2>CTCTCAACGTCTTCCAGAGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GTCAATACTCCTTGTCGAAGACCCAGTGCCAATGGTTGATGATCTCCAGGCGACGTCTTCAGATTCTGAATCATTCTGACGCCATAAGCAACACTGAAGTCGGTCCAACTAGTGTCATGTGATTGACGTCGGTTCTGGAAACCGCGCAGAAGTTTAGAAAGGGACACAGCAAATTATGAGGCTACAGGCAGTGTTAGTCGGAGAGACCAAGGGAACTACCGAAAGTTAGTAAACTCTGGAAGACGTTGAGAG</canonical_amplicon>
		<polymorphic_amplicon>GTCAATACTCCTTGTCGAAGACCCAGTGCCAATGGTTGATGATCTCCAGGCGACGTCTTCAGATTCTGAATCATTCTGACGCCATAAGCAACACTGAAGTCGGTCCAACTAGTGTCATGTGATTGACGTCGGTTCTGGAAACCGCGCAGAAGTTTAGAAAGGGACACAGCAAATTATGAGGCTACAGGCAGTGTTAGTSGGAGAGACCAAGGGAACTACCGAAAGTTAGTAAACTCTGGAAGACGTTGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7568</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>120649</contig_pos>
        <strand></strand>
        <context>GATTTATCCG[A/G]AATCCAGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTACCGTAACGAAACTAGTAACACACCAGAGGTGTCCGGGATTTATCCG</left_flank>
        <right_flank>AATCCAGATTTTGAGAAAACTAATTTATTCCTTACTTTTATGGTACAAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGACTACAAGTCAGAAATTGACCCAGAATGGAGAAATTCGGTAAAAGTGGGTATTTAAAAATGAGAACTCATTTATAGGTGTCTCGAAAGAGGTTTTCTGAAAGTGTGAAAAAATGTGCACTTTTTTACATACAAGTTATTAATTTTTAGATTTCCAGAAAACCATTTTCAGAAACTTGTAAATGATTTTGCATCTTTTTTTCCGTATCACCTCAGGACGATAATTTATTATTTTCTTTCTATCTGAAATAATTAGGAATCAGATTACTGGGAAATTTATTAGAGACTCTAGTTCTCCTAATTTTATTTTAGTCCTGAAAATTTTTTGAAAAAAAAAATCATAGTTTTTAAACTGTTTCATAGATAGCTTTTTTAAAAACAGAGGATTCTTCGCACTGATTCTGCCTCCATTGTATTTTTAGGAATCGTAATTTTTGAATTTTAGAGGATTACCGTAACGAAACTAGTAACACACCAGAGGTGTCCGGGATTTATCCGAAATCCAGATTTTGAGAAAACTAATTTATTCCTTACTTTTATGGTACAAAACATTGAAGCTATGAAAGAAAAACCACGGTGACCATTCCCGAAGGTATTTTTTGGCATTTTCTAAGTCTTTATGTCCTGGCCTATTAGTCATGTTCTTCTTGTCAATAAACAAGTTACAAGGTCCCACAACGACAACTACCGTAACCTTAATATTTTGCAATTTTTTTTGCAATTTTTCGAAAGAACTTTTTCTTTTTTTTATTCGATTTTTTGTACAATTTTTAGACCTTTTTAGGTTTTCCAGCTATTTCAAAGATTTTTTTTTCGATTTTTCCGATTTTTTGATGGAACGGTGATTCATTACTGTAGATTACTGTAGAAAACGAATTTCCTTTCGTAGTTTTTTTTAAGTTTGTATTTGCAAAAAAACTACAAACTACAATGTTTTCTACAGTAATCTACAGTAATCAAACTACCGTTCCATCAAGTTTCTGACACCGGAAAAAAATC</canonical>
            <polymorphic>TAGACTACAAGTCAGAAATTGACCCAGAATGGAGAAATTCGGTAAAAGTGGGTATTTAAAAATGAGAACTCATTTATAGGTGTCTCGAAAGAGGTTTTCTGAAAGTGTGAAAAAATGTGCACTTTTTTACATACAAGTTATTAATTTTTAGATTTCCAGAAAACCATTTTCAGAAACTTGTAAATGATTTTGCATCTTTTTTTCCGTATCACCTCAGGACGATAATTTATTATTTTCTTTCTATCTGAAATAATTAGGAATCAGATTACTGGGAAATTTATTAGAGACTCTAGTTCTCCTAATTTTATTTTAGTCCTGAAAATTTTTTGAAAAAAAAAATCATAGTTTTTAAACTGTTTCATAGATAGCTTTTTTAAAAACAGAGGATTCTTCGCACTGATTCTGCCTCCATTGTATTTTTAGGAATCGTAATTTTTGAATTTTAGAGGATTACCGTAACGAAACTAGTAACACACCAGAGGTGTCCGGGATTTATCCGRAATCCAGATTTTGAGAAAACTAATTTATTCCTTACTTTTATGGTACAAAACATTGAAGCTATGAAAGAAAAACCACGGTGACCATTCCCGAAGGTATTTTTTGGCATTTTCTAAGTCTTTATGTCCTGGCCTATTAGTCATGTTCTTCTTGTCAATAAACAAGTTACAAGGTCCCACAACGACAACTACCGTAACCTTAATATTTTGCAATTTTTTTTGCAATTTTTCGAAAGAACTTTTTCTTTTTTTTATTCGATTTTTTGTACAATTTTTAGACCTTTTTAGGTTTTCCAGCTATTTCAAAGATTTTTTTTTCGATTTTTCCGATTTTTTGATGGAACGGTGATTCATTACTGTAGATTACTGTAGAAAACGAATTTCCTTTCGTAGTTTTTTTTAAGTTTGTATTTGCAAAAAAACTACAAACTACAATGTTTTCTACAGTAATCTACAGTAATCAAACTACCGTTCCATCAAGTTTCTGACACCGGAAAAAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>327 235 158 86 74 72 17 17 14</canonical_bands>
                <polymorphic_bands>562 158 86 74 72 17 17 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTCCATTGTATTTTTAGGAATC</pcr_primer_p1>
		<pcr_primer_p2>ATGACTAATAGGCCAGGACATA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>CCTCCATTGTATTTTTAGGAATCGTAATTTTTGAATTTTAGAGGATTACCGTAACGAAACTAGTAACACACCAGAGGTGTCCGGGATTTATCCGAAATCCAGATTTTGAGAAAACTAATTTATTCCTTACTTTTATGGTACAAAACATTGAAGCTATGAAAGAAAAACCACGGTGACCATTCCCGAAGGTATTTTTTGGCATTTTCTAAGTCTTTATGTCCTGGCCTATTAGTCAT</canonical_amplicon>
		<polymorphic_amplicon>CCTCCATTGTATTTTTAGGAATCGTAATTTTTGAATTTTAGAGGATTACCGTAACGAAACTAGTAACACACCAGAGGTGTCCGGGATTTATCCGRAATCCAGATTTTGAGAAAACTAATTTATTCCTTACTTTTATGGTACAAAACATTGAAGCTATGAAAGAAAAACCACGGTGACCATTCCCGAAGGTATTTTTTGGCATTTTCTAAGTCTTTATGTCCTGGCCTATTAGTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7569</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>120791</contig_pos>
        <strand></strand>
        <context>TATTAGTCAT[G/A]TTCTTCTTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGGTATTTTTTGGCATTTTCTAAGTCTTTATGTCCTGGCCTATTAGTCAT</left_flank>
        <right_flank>TTCTTCTTGTCAATAAACAAGTTACAAGGTCCCACAACGACAACTACCGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTTAGATTTCCAGAAAACCATTTTCAGAAACTTGTAAATGATTTTGCATCTTTTTTTCCGTATCACCTCAGGACGATAATTTATTATTTTCTTTCTATCTGAAATAATTAGGAATCAGATTACTGGGAAATTTATTAGAGACTCTAGTTCTCCTAATTTTATTTTAGTCCTGAAAATTTTTTGAAAAAAAAAATCATAGTTTTTAAACTGTTTCATAGATAGCTTTTTTAAAAACAGAGGATTCTTCGCACTGATTCTGCCTCCATTGTATTTTTAGGAATCGTAATTTTTGAATTTTAGAGGATTACCGTAACGAAACTAGTAACACACCAGAGGTGTCCGGGATTTATCCGAAATCCAGATTTTGAGAAAACTAATTTATTCCTTACTTTTATGGTACAAAACATTGAAGCTATGAAAGAAAAACCACGGTGACCATTCCCGAAGGTATTTTTTGGCATTTTCTAAGTCTTTATGTCCTGGCCTATTAGTCATGTTCTTCTTGTCAATAAACAAGTTACAAGGTCCCACAACGACAACTACCGTAACCTTAATATTTTGCAATTTTTTTTGCAATTTTTCGAAAGAACTTTTTCTTTTTTTTATTCGATTTTTTGTACAATTTTTAGACCTTTTTAGGTTTTCCAGCTATTTCAAAGATTTTTTTTTCGATTTTTCCGATTTTTTGATGGAACGGTGATTCATTACTGTAGATTACTGTAGAAAACGAATTTCCTTTCGTAGTTTTTTTTAAGTTTGTATTTGCAAAAAAACTACAAACTACAATGTTTTCTACAGTAATCTACAGTAATCAAACTACCGTTCCATCAAGTTTCTGACACCGGAAAAAAATCGAAAATGAATCTTCAAAAATAACACTGGAAAAATCAAAAATGAGTCTTCAAAAATAGCTGAAAAACCTAAAAAGGTCTGAAAATTTTGCGAAAAATCGAAGAGATTATTTGGATTTCTTTTCTTGGTTTTCGTGCGTTTTCG</canonical>
            <polymorphic>AATTTTTAGATTTCCAGAAAACCATTTTCAGAAACTTGTAAATGATTTTGCATCTTTTTTTCCGTATCACCTCAGGACGATAATTTATTATTTTCTTTCTATCTGAAATAATTAGGAATCAGATTACTGGGAAATTTATTAGAGACTCTAGTTCTCCTAATTTTATTTTAGTCCTGAAAATTTTTTGAAAAAAAAAATCATAGTTTTTAAACTGTTTCATAGATAGCTTTTTTAAAAACAGAGGATTCTTCGCACTGATTCTGCCTCCATTGTATTTTTAGGAATCGTAATTTTTGAATTTTAGAGGATTACCGTAACGAAACTAGTAACACACCAGAGGTGTCCGGGATTTATCCGAAATCCAGATTTTGAGAAAACTAATTTATTCCTTACTTTTATGGTACAAAACATTGAAGCTATGAAAGAAAAACCACGGTGACCATTCCCGAAGGTATTTTTTGGCATTTTCTAAGTCTTTATGTCCTGGCCTATTAGTCATRTTCTTCTTGTCAATAAACAAGTTACAAGGTCCCACAACGACAACTACCGTAACCTTAATATTTTGCAATTTTTTTTGCAATTTTTCGAAAGAACTTTTTCTTTTTTTTATTCGATTTTTTGTACAATTTTTAGACCTTTTTAGGTTTTCCAGCTATTTCAAAGATTTTTTTTTCGATTTTTCCGATTTTTTGATGGAACGGTGATTCATTACTGTAGATTACTGTAGAAAACGAATTTCCTTTCGTAGTTTTTTTTAAGTTTGTATTTGCAAAAAAACTACAAACTACAATGTTTTCTACAGTAATCTACAGTAATCAAACTACCGTTCCATCAAGTTTCTGACACCGGAAAAAAATCGAAAATGAATCTTCAAAAATAACACTGGAAAAATCAAAAATGAGTCTTCAAAAATAGCTGAAAAACCTAAAAAGGTCTGAAAATTTTGCGAAAAATCGAAGAGATTATTTGGATTTCTTTTCTTGGTTTTCGTGCGTTTTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCCAGATTTTGAGAAAACTAAT</pcr_primer_p1>
		<pcr_primer_p2>ATCAATCTGGTACAAAACAAATC</pcr_primer_p2>
		<pcr_amplicon_size>814</pcr_amplicon_size>
		<canonical_amplicon>AATCCAGATTTTGAGAAAACTAATTTATTCCTTACTTTTATGGTACAAAACATTGAAGCTATGAAAGAAAAACCACGGTGACCATTCCCGAAGGTATTTTTTGGCATTTTCTAAGTCTTTATGTCCTGGCCTATTAGTCATGTTCTTCTTGTCAATAAACAAGT</canonical_amplicon>
		<polymorphic_amplicon>AATCCAGATTTTGAGAAAACTAATTTATTCCTTACTTTTATGGTACAAAACATTGAAGCTATGAAAGAAAAACCACGGTGACCATTCCCGAAGGTATTTTTTGGCATTTTCTAAGTCTTTATGTCCTGGCCTATTAGTCATRTTCTTCTTGTCAATAAACAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7570</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>120809</contig_pos>
        <strand></strand>
        <context>TGTCAATAAA[C/A]AAGTTACaag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TCTAAGTCTTTATGTCCTGGCCTATTAGTCATGTTCTTCTTGTCAATAAA</left_flank>
        <right_flank>AAGTTACAAGGTCCCACAACGACAACTACCGTAACCTTAATATTTTGCAA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACCATTTTCAGAAACTTGTAAATGATTTTGCATCTTTTTTTCCGTATCACCTCAGGACGATAATTTATTATTTTCTTTCTATCTGAAATAATTAGGAATCAGATTACTGGGAAATTTATTAGAGACTCTAGTTCTCCTAATTTTATTTTAGTCCTGAAAATTTTTTGAAAAAAAAAATCATAGTTTTTAAACTGTTTCATAGATAGCTTTTTTAAAAACAGAGGATTCTTCGCACTGATTCTGCCTCCATTGTATTTTTAGGAATCGTAATTTTTGAATTTTAGAGGATTACCGTAACGAAACTAGTAACACACCAGAGGTGTCCGGGATTTATCCGAAATCCAGATTTTGAGAAAACTAATTTATTCCTTACTTTTATGGTACAAAACATTGAAGCTATGAAAGAAAAACCACGGTGACCATTCCCGAAGGTATTTTTTGGCATTTTCTAAGTCTTTATGTCCTGGCCTATTAGTCATGTTCTTCTTGTCAATAAACAAGTTACAAGGTCCCACAACGACAACTACCGTAACCTTAATATTTTGCAATTTTTTTTGCAATTTTTCGAAAGAACTTTTTCTTTTTTTTATTCGATTTTTTGTACAATTTTTAGACCTTTTTAGGTTTTCCAGCTATTTCAAAGATTTTTTTTTCGATTTTTCCGATTTTTTGATGGAACGGTGATTCATTACTGTAGATTACTGTAGAAAACGAATTTCCTTTCGTAGTTTTTTTTAAGTTTGTATTTGCAAAAAAACTACAAACTACAATGTTTTCTACAGTAATCTACAGTAATCAAACTACCGTTCCATCAAGTTTCTGACACCGGAAAAAAATCGAAAATGAATCTTCAAAAATAACACTGGAAAAATCAAAAATGAGTCTTCAAAAATAGCTGAAAAACCTAAAAAGGTCTGAAAATTTTGCGAAAAATCGAAGAGATTATTTGGATTTCTTTTCTTGGTTTTCGTGCGTTTTCGGGAATTTCTCCTTATCAA</canonical>
            <polymorphic>AAACCATTTTCAGAAACTTGTAAATGATTTTGCATCTTTTTTTCCGTATCACCTCAGGACGATAATTTATTATTTTCTTTCTATCTGAAATAATTAGGAATCAGATTACTGGGAAATTTATTAGAGACTCTAGTTCTCCTAATTTTATTTTAGTCCTGAAAATTTTTTGAAAAAAAAAATCATAGTTTTTAAACTGTTTCATAGATAGCTTTTTTAAAAACAGAGGATTCTTCGCACTGATTCTGCCTCCATTGTATTTTTAGGAATCGTAATTTTTGAATTTTAGAGGATTACCGTAACGAAACTAGTAACACACCAGAGGTGTCCGGGATTTATCCGAAATCCAGATTTTGAGAAAACTAATTTATTCCTTACTTTTATGGTACAAAACATTGAAGCTATGAAAGAAAAACCACGGTGACCATTCCCGAAGGTATTTTTTGGCATTTTCTAAGTCTTTATGTCCTGGCCTATTAGTCATGTTCTTCTTGTCAATAAAMAAGTTACAAGGTCCCACAACGACAACTACCGTAACCTTAATATTTTGCAATTTTTTTTGCAATTTTTCGAAAGAACTTTTTCTTTTTTTTATTCGATTTTTTGTACAATTTTTAGACCTTTTTAGGTTTTCCAGCTATTTCAAAGATTTTTTTTTCGATTTTTCCGATTTTTTGATGGAACGGTGATTCATTACTGTAGATTACTGTAGAAAACGAATTTCCTTTCGTAGTTTTTTTTAAGTTTGTATTTGCAAAAAAACTACAAACTACAATGTTTTCTACAGTAATCTACAGTAATCAAACTACCGTTCCATCAAGTTTCTGACACCGGAAAAAAATCGAAAATGAATCTTCAAAAATAACACTGGAAAAATCAAAAATGAGTCTTCAAAAATAGCTGAAAAACCTAAAAAGGTCTGAAAATTTTGCGAAAAATCGAAGAGATTATTTGGATTTCTTTTCTTGGTTTTCGTGCGTTTTCGGGAATTTCTCCTTATCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCATTTTCTAAGTCTTTATGTCCT</pcr_primer_p1>
		<pcr_primer_p2>ATCAATCTGGTACAAAACAAATC</pcr_primer_p2>
		<pcr_amplicon_size>711</pcr_amplicon_size>
		<canonical_amplicon>GCATTTTCTAAGTCTTTATGTCCTGGCCTATTAGTCATGTTCTTCTTGTCAATAAACAAGTTACAAGGTCCCACAACGA</canonical_amplicon>
		<polymorphic_amplicon>GCATTTTCTAAGTCTTTATGTCCTGGCCTATTAGTCATGTTCTTCTTGTCAATAAAMAAGTTACAAGGTCCCACAACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7571</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>123064</contig_pos>
        <strand>+</strand>
        <context>CGGGAGTTTT[C/T]CGGAATCGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTT</left_flank>
        <right_flank>CGGAATCGCTGACTTTTTTGATTCGAGATTTTGCAATTTTTCTGGGTGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTCTACAATTTTTGCGAATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAAGTTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTTCGGAATCGCTGACTTTTTTGATTCGAGATTTTGCAATTTTTCTGGGTGTTTTTTTTAATGTGAATCACATTTTTTAAAATAAACATCTCGTGTAAAATACTTTTCGGTTTCAAGAAGTACATAGAGTTTATAAAAGAACTCGAAACTTTATTGAGCATCTATAAACTTTGTTGAGAACACTTATACACACATTTATTACAAAGTTGCGCAAAAATCTGCATCTCCAAAGCAGAAAGATTTGAAAATCAACATACATGTCGCGTAATTGACGACTACTTTGTTTAACTCCTATGCCGCTTTCAAAGCAGTCTCCAGGACTGGAGATTGCGTCCAAAGCTGCCAATTTTTCCAGGTTTTCCAGGGACACAAAACTTCGATTTACCTCGTTGTAGCATATGTTATTTTTTCGAAGGTTCNGCTGTAAATTAGAAACTTTCTTCTTTTGGATCTCGAAATGATGTCGAAGAAAAAAAACAGCTACAACAAGGAAAATCAAAGTT</canonical>
            <polymorphic>TCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTCTACAATTTTTGCGAATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAAGTTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTYCGGAATCGCTGACTTTTTTGATTCGAGATTTTGCAATTTTTCTGGGTGTTTTTTTTAATGTGAATCACATTTTTTAAAATAAACATCTCGTGTAAAATACTTTTCGGTTTCAAGAAGTACATAGAGTTTATAAAAGAACTCGAAACTTTATTGAGCATCTATAAACTTTGTTGAGAACACTTATACACACATTTATTACAAAGTTGCGCAAAAATCTGCATCTCCAAAGCAGAAAGATTTGAAAATCAACATACATGTCGCGTAATTGACGACTACTTTGTTTAACTCCTATGCCGCTTTCAAAGCAGTCTCCAGGACTGGAGATTGCGTCCAAAGCTGCCAATTTTTCCAGGTTTTCCAGGGACACAAAACTTCGATTTACCTCGTTGTAGCATATGTTATTTTTTCGAAGGTTCNGCTGTAAATTAGAAACTTTCTTCTTTTGGATCTCGAAATGATGTCGAAGAAAAAAAACAGCTACAACAAGGAAAATCAAAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>498 305 107 90</canonical_bands>
                <polymorphic_bands>803 107 90</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTGGGTTATTTGTTTTCAATG</pcr_primer_p1>
		<pcr_primer_p2>CGAAAAGTATTTTACACGAGATG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTTCGGAATCGCTGACTTTTTTGATTCGAGATTTTGCAATTTTTCTGGGTGTTTTTTTTAATGTGAATCACATTTTTTAAAATAAACATCTCGTGTAAAATACTTTTCG</canonical_amplicon>
		<polymorphic_amplicon>TATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTYCGGAATCGCTGACTTTTTTGATTCGAGATTTTGCAATTTTTCTGGGTGTTTTTTTTAATGTGAATCACATTTTTTAAAATAAACATCTCGTGTAAAATACTTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7572</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>122954</contig_pos>
        <strand>+</strand>
        <context>TTTGAAATCT[C/T]GTTTCCAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCT</left_flank>
        <right_flank>GTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTCTACAATTTTTGCGAATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAAGTTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTTCGGAATCGCTGACTTTTTTGATTCGAGATTTTGCAATTTTTCTGGGTGTTTTTTTTAATGTGAATCACATTTTTTAAAATAAACATCTCGTGTAAAATACTTTTCGGTTTCAAGAAGTACATAGAGTTTATAAAAGAACTCGAAACTTTATTGAGCATCTATAAACTTTGTTGAGAACACTTATACACACATTTATTACAAAGTTGCGCAAAAATCTGCATCTCCAAAGCAGAAAGATTTGAAAATCAACATACATGTCGCGTAATTGACGACTACTTTGTTTAACTCCTATGCCGCTTTCAAAGCAGTCTCCAGGACTGGAGATTGCGTCCAAAGCTGCCAATTTTTCCAGGTTTTCCAGGGACACAAAACTTCGATTTACCTCGTTGT</canonical>
            <polymorphic>CAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTCTACAATTTTTGCGAATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAAGTTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTYGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTTCGGAATCGCTGACTTTTTTGATTCGAGATTTTGCAATTTTTCTGGGTGTTTTTTTTAATGTGAATCACATTTTTTAAAATAAACATCTCGTGTAAAATACTTTTCGGTTTCAAGAAGTACATAGAGTTTATAAAAGAACTCGAAACTTTATTGAGCATCTATAAACTTTGTTGAGAACACTTATACACACATTTATTACAAAGTTGCGCAAAAATCTGCATCTCCAAAGCAGAAAGATTTGAAAATCAACATACATGTCGCGTAATTGACGACTACTTTGTTTAACTCCTATGCCGCTTTCAAAGCAGTCTCCAGGACTGGAGATTGCGTCCAAAGCTGCCAATTTTTCCAGGTTTTCCAGGGACACAAAACTTCGATTTACCTCGTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGAAATTACTTTTCGGTTTCA</pcr_primer_p1>
		<pcr_primer_p2>AAAATTGCAAAATCTCGAATC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTTCGGAATCGCTGACTTTTTTGATTCGAGATTTTGCAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTYGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTTCGGAATCGCTGACTTTTTTGATTCGAGATTTTGCAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7573</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>122942</contig_pos>
        <strand>+</strand>
        <context>GTTTTCAATG[C/T]CTTTGAAATC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATG</left_flank>
        <right_flank>CTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCAAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTCTACAATTTTTGCGAATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAAGTTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTTCGGAATCGCTGACTTTTTTGATTCGAGATTTTGCAATTTTTCTGGGTGTTTTTTTTAATGTGAATCACATTTTTTAAAATAAACATCTCGTGTAAAATACTTTTCGGTTTCAAGAAGTACATAGAGTTTATAAAAGAACTCGAAACTTTATTGAGCATCTATAAACTTTGTTGAGAACACTTATACACACATTTATTACAAAGTTGCGCAAAAATCTGCATCTCCAAAGCAGAAAGATTTGAAAATCAACATACATGTCGCGTAATTGACGACTACTTTGTTTAACTCCTATGCCGCTTTCAAAGCAGTCTCCAGGACTGGAGATTGCGTCCAAAGCTGCCAATTTTTCCAGGTTTTCCAGGGACACAAAACTTCGAT</canonical>
            <polymorphic>TTCCAAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTCTACAATTTTTGCGAATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAAGTTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGYCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTTCGGAATCGCTGACTTTTTTGATTCGAGATTTTGCAATTTTTCTGGGTGTTTTTTTTAATGTGAATCACATTTTTTAAAATAAACATCTCGTGTAAAATACTTTTCGGTTTCAAGAAGTACATAGAGTTTATAAAAGAACTCGAAACTTTATTGAGCATCTATAAACTTTGTTGAGAACACTTATACACACATTTATTACAAAGTTGCGCAAAAATCTGCATCTCCAAAGCAGAAAGATTTGAAAATCAACATACATGTCGCGTAATTGACGACTACTTTGTTTAACTCCTATGCCGCTTTCAAAGCAGTCTCCAGGACTGGAGATTGCGTCCAAAGCTGCCAATTTTTCCAGGTTTTCCAGGGACACAAAACTTCGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGAAATTACTTTTCGGTTTCA</pcr_primer_p1>
		<pcr_primer_p2>AAAATTGCAAAATCTCGAATC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTTCGGAATCGCTGACTTTTTTGATTCGAGATTTTGCAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGYCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTTCGGAATCGCTGACTTTTTTGATTCGAGATTTTGCAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7574</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>122855</contig_pos>
        <strand>+</strand>
        <context>TGTGATAAAA[A/G]TTTTGTATGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAA</left_flank>
        <right_flank>TTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTATTCTTGACCAGAGTCCTTTTATAATGGGAAAATAACTGGTTTTTGAAAGGGAATAAAGTTCTTTAAAAGTTCAGTTAACGTTATTCCAAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTCTACAATTTTTGCGAATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAAGTTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTTCGGAATCGCTGACTTTTTTGATTCGAGATTTTGCAATTTTTCTGGGTGTTTTTTTTAATGTGAATCACATTTTTTAAAATAAACATCTCGTGTAAAATACTTTTCGGTTTCAAGAAGTACATAGAGTTTATAAAAGAACTCGAAACTTTATTGAGCATCTATAAACTTTGTTGAGAACACTTATACACACATTTATTACAAAGTTGCGCAAAAATCTGCATCTCCAAAGCAGAAAGATTTGAAAATCAACATACATGTCGCGTAATTGACGACTACTTTGTTTAACTCCTA</canonical>
            <polymorphic>TGTATTCTTGACCAGAGTCCTTTTATAATGGGAAAATAACTGGTTTTTGAAAGGGAATAAAGTTCTTTAAAAGTTCAGTTAACGTTATTCCAAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTCTACAATTTTTGCGAATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAARTTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTTCGGAATCGCTGACTTTTTTGATTCGAGATTTTGCAATTTTTCTGGGTGTTTTTTTTAATGTGAATCACATTTTTTAAAATAAACATCTCGTGTAAAATACTTTTCGGTTTCAAGAAGTACATAGAGTTTATAAAAGAACTCGAAACTTTATTGAGCATCTATAAACTTTGTTGAGAACACTTATACACACATTTATTACAAAGTTGCGCAAAAATCTGCATCTCCAAAGCAGAAAGATTTGAAAATCAACATACATGTCGCGTAATTGACGACTACTTTGTTTAACTCCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTGGAAGTTCTACAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCATTGAAAATTCAAATCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>GGATTGGAAGTTCTACAATTTTTGCGAATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAAGTTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAA</canonical_amplicon>
		<polymorphic_amplicon>GGATTGGAAGTTCTACAATTTTTGCGAATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAARTTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7576</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>122704</contig_pos>
        <strand>+</strand>
        <context>AATGAAAAAT[A/C]Tggaattttc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAAT</left_flank>
        <right_flank>TGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAAATACTACAAGCGAGATAGATAAGAACAGGTGGTGGTCAACGGAATCAAAGAAAACAGTCACGTGGCGATGCGGAGAACAAGATGTTAGGTCAGGAATCAGTGACTTTTGGAAAAAATAATACTTCGGGGAGGTTTTTTGGGAAGAAATGTATTCTTGACCAGAGTCCTTTTATAATGGGAAAATAACTGGTTTTTGAAAGGGAATAAAGTTCTTTAAAAGTTCAGTTAACGTTATTCCAAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTCTACAATTTTTGCGAATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAAGTTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTTCGGAATCGCTGACTTTTTTGATTCGAGATTTTGCAATTTTTCTGGGTGTTTTTTTTAATGTGAATCACATTTTTTAAAATAAACATCTCGTGTAAAATACTTTTCGGTTTCAAGAAGTACATAGAGTTTATAAAAGAACT</canonical>
            <polymorphic>CTAAATACTACAAGCGAGATAGATAAGAACAGGTGGTGGTCAACGGAATCAAAGAAAACAGTCACGTGGCGATGCGGAGAACAAGATGTTAGGTCAGGAATCAGTGACTTTTGGAAAAAATAATACTTCGGGGAGGTTTTTTGGGAAGAAATGTATTCTTGACCAGAGTCCTTTTATAATGGGAAAATAACTGGTTTTTGAAAGGGAATAAAGTTCTTTAAAAGTTCAGTTAACGTTATTCCAAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATMTGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTCTACAATTTTTGCGAATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAAGTTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTTCGGAATCGCTGACTTTTTTGATTCGAGATTTTGCAATTTTTCTGGGTGTTTTTTTTAATGTGAATCACATTTTTTAAAATAAACATCTCGTGTAAAATACTTTTCGGTTTCAAGAAGTACATAGAGTTTATAAAAGAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGGATCAAGTCATAGAATACAA</pcr_primer_p1>
		<pcr_primer_p2>GAACTTCCAATCCACAAAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>TTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATMTGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7577</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>122673</contig_pos>
        <strand>+</strand>
        <context>ATTTGAYCTG[A/G]ATGACATTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTG</left_flank>
        <right_flank>ATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGG</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGCAGCAAACAACATTGTAAAAAAGGAAACTAAATACTACAAGCGAGATAGATAAGAACAGGTGGTGGTCAACGGAATCAAAGAAAACAGTCACGTGGCGATGCGGAGAACAAGATGTTAGGTCAGGAATCAGTGACTTTTGGAAAAAATAATACTTCGGGGAGGTTTTTTGGGAAGAAATGTATTCTTGACCAGAGTCCTTTTATAATGGGAAAATAACTGGTTTTTGAAAGGGAATAAAGTTCTTTAAAAGTTCAGTTAACGTTATTCCAAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTCTACAATTTTTGCGAATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAAGTTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTTCGGAATCGCTGACTTTTTTGATTCGAGATTTTGCAATTTTTCTGGGTGTTTTTTTTAATGTGAATCACATTTTTTAAAATAAACATCTCGTGTAAAATACTTTTCGGTT</canonical>
            <polymorphic>TTCGCAGCAAACAACATTGTAAAAAAGGAAACTAAATACTACAAGCGAGATAGATAAGAACAGGTGGTGGTCAACGGAATCAAAGAAAACAGTCACGTGGCGATGCGGAGAACAAGATGTTAGGTCAGGAATCAGTGACTTTTGGAAAAAATAATACTTCGGGGAGGTTTTTTGGGAAGAAATGTATTCTTGACCAGAGTCCTTTTATAATGGGAAAATAACTGGTTTTTGAAAGGGAATAAAGTTCTTTAAAAGTTCAGTTAACGTTATTCCAAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGRATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTCTACAATTTTTGCGAATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAAGTTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTTCGGAATCGCTGACTTTTTTGATTCGAGATTTTGCAATTTTTCTGGGTGTTTTTTTTAATGTGAATCACATTTTTTAAAATAAACATCTCGTGTAAAATACTTTTCGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>498 305 107 90</canonical_bands>
                <polymorphic_bands>588 305 107</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGGATCAAGTCATAGAATACAA</pcr_primer_p1>
		<pcr_primer_p2>GAACTTCCAATCCACAAAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>TTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGRATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7578</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>122651</contig_pos>
        <strand></strand>
        <context>CTACACTTGT[T/A]GGTTGTGACT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGT</left_flank>
        <right_flank>GGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAA</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAGACCATTTCTCTCTTTTTTTCGCAGCAAACAACATTGTAAAAAAGGAAACTAAATACTACAAGCGAGATAGATAAGAACAGGTGGTGGTCAACGGAATCAAAGAAAACAGTCACGTGGCGATGCGGAGAACAAGATGTTAGGTCAGGAATCAGTGACTTTTGGAAAAAATAATACTTCGGGGAGGTTTTTTGGGAAGAAATGTATTCTTGACCAGAGTCCTTTTATAATGGGAAAATAACTGGTTTTTGAAAGGGAATAAAGTTCTTTAAAAGTTCAGTTAACGTTATTCCAAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTCTACAATTTTTGCGAATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAAGTTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTTCGGAATCGCTGACTTTTTTGATTCGAGATTTTGCAATTTTTCTGGGTGTTTTTTTTAATGTGAATCACATTTTTTAAAATAAACATC</canonical>
            <polymorphic>CAAAGACCATTTCTCTCTTTTTTTCGCAGCAAACAACATTGTAAAAAAGGAAACTAAATACTACAAGCGAGATAGATAAGAACAGGTGGTGGTCAACGGAATCAAAGAAAACAGTCACGTGGCGATGCGGAGAACAAGATGTTAGGTCAGGAATCAGTGACTTTTGGAAAAAATAATACTTCGGGGAGGTTTTTTGGGAAGAAATGTATTCTTGACCAGAGTCCTTTTATAATGGGAAAATAACTGGTTTTTGAAAGGGAATAAAGTTCTTTAAAAGTTCAGTTAACGTTATTCCAAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTWGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTCTACAATTTTTGCGAATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAAGTTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTTCGGAATCGCTGACTTTTTTGATTCGAGATTTTGCAATTTTTCTGGGTGTTTTTTTTAATGTGAATCACATTTTTTAAAATAAACATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGGATCAAGTCATAGAATACAA</pcr_primer_p1>
		<pcr_primer_p2>GAACTTCCAATCCACAAAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>TTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTWGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7579</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>122599</contig_pos>
        <strand>+</strand>
        <context>TTYATTTCAG[A/G]GAAATGAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAG</left_flank>
        <right_flank>GAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACAATAGTGTCAAAAAACAAAACTGATACACTATGTTTACAGTACCGAATCAAAGACCATTTCTCTCTTTTTTTCGCAGCAAACAACATTGTAAAAAAGGAAACTAAATACTACAAGCGAGATAGATAAGAACAGGTGGTGGTCAACGGAATCAAAGAAAACAGTCACGTGGCGATGCGGAGAACAAGATGTTAGGTCAGGAATCAGTGACTTTTGGAAAAAATAATACTTCGGGGAGGTTTTTTGGGAAGAAATGTATTCTTGACCAGAGTCCTTTTATAATGGGAAAATAACTGGTTTTTGAAAGGGAATAAAGTTCTTTAAAAGTTCAGTTAACGTTATTCCAAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTCTACAATTTTTGCGAATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAAGTTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTTCGGAATCGCTGACTTTTTTGATTCGAGATTTTGCA</canonical>
            <polymorphic>AAACAATAGTGTCAAAAAACAAAACTGATACACTATGTTTACAGTACCGAATCAAAGACCATTTCTCTCTTTTTTTCGCAGCAAACAACATTGTAAAAAAGGAAACTAAATACTACAAGCGAGATAGATAAGAACAGGTGGTGGTCAACGGAATCAAAGAAAACAGTCACGTGGCGATGCGGAGAACAAGATGTTAGGTCAGGAATCAGTGACTTTTGGAAAAAATAATACTTCGGGGAGGTTTTTTGGGAAGAAATGTATTCTTGACCAGAGTCCTTTTATAATGGGAAAATAACTGGTTTTTGAAAGGGAATAAAGTTCTTTAAAAGTTCAGTTAACGTTATTCCAAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGRGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTCTACAATTTTTGCGAATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAAGTTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTTCGGAATCGCTGACTTTTTTGATTCGAGATTTTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTACTCCAGAATCGGCTAAT</pcr_primer_p1>
		<pcr_primer_p2>CATTCCAATAAAACATAATGTCA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATG</canonical_amplicon>
		<polymorphic_amplicon>AAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGRGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7580</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>122591</contig_pos>
        <strand>+</strand>
        <context>WTGAGTTTTT[C/T]ATTTCAGRGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTT</left_flank>
        <right_flank>ATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGAC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAACAGAAAACAATAGTGTCAAAAAACAAAACTGATACACTATGTTTACAGTACCGAATCAAAGACCATTTCTCTCTTTTTTTCGCAGCAAACAACATTGTAAAAAAGGAAACTAAATACTACAAGCGAGATAGATAAGAACAGGTGGTGGTCAACGGAATCAAAGAAAACAGTCACGTGGCGATGCGGAGAACAAGATGTTAGGTCAGGAATCAGTGACTTTTGGAAAAAATAATACTTCGGGGAGGTTTTTTGGGAAGAAATGTATTCTTGACCAGAGTCCTTTTATAATGGGAAAATAACTGGTTTTTGAAAGGGAATAAAGTTCTTTAAAAGTTCAGTTAACGTTATTCCAAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTCTACAATTTTTGCGAATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAAGTTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTTCGGAATCGCTGACTTTTTTGATTCGAG</canonical>
            <polymorphic>ACAACAGAAAACAATAGTGTCAAAAAACAAAACTGATACACTATGTTTACAGTACCGAATCAAAGACCATTTCTCTCTTTTTTTCGCAGCAAACAACATTGTAAAAAAGGAAACTAAATACTACAAGCGAGATAGATAAGAACAGGTGGTGGTCAACGGAATCAAAGAAAACAGTCACGTGGCGATGCGGAGAACAAGATGTTAGGTCAGGAATCAGTGACTTTTGGAAAAAATAATACTTCGGGGAGGTTTTTTGGGAAGAAATGTATTCTTGACCAGAGTCCTTTTATAATGGGAAAATAACTGGTTTTTGAAAGGGAATAAAGTTCTTTAAAAGTTCAGTTAACGTTATTCCAAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTYATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTCTACAATTTTTGCGAATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAAGTTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTTCGGAATCGCTGACTTTTTTGATTCGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTACTCCAGAATCGGCTAAT</pcr_primer_p1>
		<pcr_primer_p2>CATTCCAATAAAACATAATGTCA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATG</canonical_amplicon>
		<polymorphic_amplicon>AAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTYATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7581</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>122581</contig_pos>
        <strand>+</strand>
        <context>KTTTGGTTCA[A/T]TGAGTTTTTY</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCA</left_flank>
        <right_flank>TGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCAAAAAACAACAGAAAACAATAGTGTCAAAAAACAAAACTGATACACTATGTTTACAGTACCGAATCAAAGACCATTTCTCTCTTTTTTTCGCAGCAAACAACATTGTAAAAAAGGAAACTAAATACTACAAGCGAGATAGATAAGAACAGGTGGTGGTCAACGGAATCAAAGAAAACAGTCACGTGGCGATGCGGAGAACAAGATGTTAGGTCAGGAATCAGTGACTTTTGGAAAAAATAATACTTCGGGGAGGTTTTTTGGGAAGAAATGTATTCTTGACCAGAGTCCTTTTATAATGGGAAAATAACTGGTTTTTGAAAGGGAATAAAGTTCTTTAAAAGTTCAGTTAACGTTATTCCAAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTCTACAATTTTTGCGAATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAAGTTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTTCGGAATCGCTGACTTTT</canonical>
            <polymorphic>TTTTCAAAAAACAACAGAAAACAATAGTGTCAAAAAACAAAACTGATACACTATGTTTACAGTACCGAATCAAAGACCATTTCTCTCTTTTTTTCGCAGCAAACAACATTGTAAAAAAGGAAACTAAATACTACAAGCGAGATAGATAAGAACAGGTGGTGGTCAACGGAATCAAAGAAAACAGTCACGTGGCGATGCGGAGAACAAGATGTTAGGTCAGGAATCAGTGACTTTTGGAAAAAATAATACTTCGGGGAGGTTTTTTGGGAAGAAATGTATTCTTGACCAGAGTCCTTTTATAATGGGAAAATAACTGGTTTTTGAAAGGGAATAAAGTTCTTTAAAAGTTCAGTTAACGTTATTCCAAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCAWTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTCTACAATTTTTGCGAATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAAGTTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTTCGGAATCGCTGACTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTACTCCAGAATCGGCTAAT</pcr_primer_p1>
		<pcr_primer_p2>CATTCCAATAAAACATAATGTCA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATG</canonical_amplicon>
		<polymorphic_amplicon>AAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCAWTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7586</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>8980</contig_pos>
        <strand></strand>
        <context>AAAAAAWWTT[G/T]TTTCAGATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGTAGGTGGCTTTTTTGGCGCGAAATTTGAAAATTTTGAAAAAAATTTT</left_flank>
        <right_flank>TTTCAGATTTCTAAAAATCTTAAAATTTTAAGAACTCAAATTTTTTTCAG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGCTGAAAATTGCTAATTATTACATTGTTCAAAATAAATTTTCACACATTTTGATGTTTTTCGTTTTTTCATAGCTATTGTAGTTTTGGAGATATGCGCCTTTAAAGAAGCCCCCATTCTCGGTAGGGGAGATTGTCTGCGTTTCTTTAAACTTGTATATCTCAAAAACTACGGTACCTACTACAAAGTTGTCAACTACAAATATGTGTAAAATTTTATGCTGAGTAATTTTGTAGTTGACAACTTCTTCCTAGCTATTGTACTTTTTGAGTTACGCGTCTTTAAAAATGACTCATCTTTCAGAACTACTCGGACTGCGAGAAGAAGCACTTCCTGGATGTGGCCTACGAGAACAATTGGGGGACTACGGTAGCAGCGAACAAATTCAATCGTGTCTGGGGAAAAGGACCAACAAGACGCATGTTTTATTGGTGGAGAGGACAATTCAAGTAGGTGGCTTTTTTGGCGCGAAATTTGAAAATTTTGAAAAAAATTTTGTTTCAGATTTCTAAAAATCTTAAAATTTTAAGAACTCAAATTTTTTTCAGAAAAGAGCACGACCGTGACCAAATCGTTCTGGAGAGTTTGTACACTAAGAAAAGAGAGGGATCCAAGAAATTGGCGGATTACTGTAGAAATCCAGAGGGTCTGGCAGATGAGAAAACTGCAAAAGACGCTCAACAATGTCTGAAGGATCTGGAAGCGAATGATAAGGAAATCGAGAGTCTTATCAATAAAAAGTGAGCAATTTTTTCTGGAAAAATCTGGAATTAAAAAAAATGTTTTTTTGAAAAAACATTTTTTCTTTAAATTTCTAGACGTTTTCCAGATTTTTTTTGAAGATTGCTCAGCTTAAAAAAACTCGAAATATTCTAGAAAACTCATGGCTTGCTCGATAACCGGCGAAAAATGCGCGCACGGAAACGGAATTCAAGAGGATACGGTGGCCCGAAAATTCACGACCCCATTCGTATGTGCTCACTGTGAAATGCCGTTTC</canonical>
            <polymorphic>ATAGCTGAAAATTGCTAATTATTACATTGTTCAAAATAAATTTTCACACATTTTGATGTTTTTCGTTTTTTCATAGCTATTGTAGTTTTGGAGATATGCGCCTTTAAAGAAGCCCCCATTCTCGGTAGGGGAGATTGTCTGCGTTTCTTTAAACTTGTATATCTCAAAAACTACGGTACCTACTACAAAGTTGTCAACTACAAATATGTGTAAAATTTTATGCTGAGTAATTTTGTAGTTGACAACTTCTTCCTAGCTATTGTACTTTTTGAGTTACGCGTCTTTAAAAATGACTCATCTTTCAGAACTACTCGGACTGCGAGAAGAAGCACTTCCTGGATGTGGCCTACGAGAACAATTGGGGGACTACGGTAGCAGCGAACAAATTCAATCGTGTCTGGGGAAAAGGACCAACAAGACGCATGTTTTATTGGTGGAGAGGACAATTCAAGTAGGTGGCTTTTTTGGCGCGAAATTTGAAAATTTTGAAAAAAATTTTKTTTCAGATTTCTAAAAATCTTAAAATTTTAAGAACTCAAATTTTTTTCAGAAAAGAGCACGACCGTGACCAAATCGTTCTGGAGAGTTTGTACACTAAGAAAAGAGAGGGATCCAAGAAATTGGCGGATTACTGTAGAAATCCAGAGGGTCTGGCAGATGAGAAAACTGCAAAAGACGCTCAACAATGTCTGAAGGATCTGGAAGCGAATGATAAGGAAATCGAGAGTCTTATCAATAAAAAGTGAGCAATTTTTTCTGGAAAAATCTGGAATTAAAAAAAATGTTTTTTTGAAAAAACATTTTTTCTTTAAATTTCTAGACGTTTTCCAGATTTTTTTTGAAGATTGCTCAGCTTAAAAAAACTCGAAATATTCTAGAAAACTCATGGCTTGCTCGATAACCGGCGAAAAATGCGCGCACGGAAACGGAATTCAAGAGGATACGGTGGCCCGAAAATTCACGACCCCATTCGTATGTGCTCACTGTGAAATGCCGTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAACAATTGGGGGACTAC</pcr_primer_p1>
		<pcr_primer_p2>TCTTAGTGTACAAACTCTCCAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGAACAATTGGGGGACTACGGTAGCAGCGAACAAATTCAATCGTGTCTGGGGAAAAGGACCAACAAGACGCATGTTTTATTGGTGGAGAGGACAATTCAAGTAGGTGGCTTTTTTGGCGCGAAATTTGAAAATTTTGAAAAAAATTTTGTTTCAGATTTCTAAAAATCTTAAAATTTTAAGAACTCAAATTTTTTTCAGAAAAGAGCACGACCGTGACCAAATCGTTCTGGAGAGTTTGTACACTAAGA</canonical_amplicon>
		<polymorphic_amplicon>GAGAACAATTGGGGGACTACGGTAGCAGCGAACAAATTCAATCGTGTCTGGGGAAAAGGACCAACAAGACGCATGTTTTATTGGTGGAGAGGACAATTCAAGTAGGTGGCTTTTTTGGCGCGAAATTTGAAAATTTTGAAAAAAATTTTKTTTCAGATTTCTAAAAATCTTAAAATTTTAAGAACTCAAATTTTTTTCAGAAAAGAGCACGACCGTGACCAAATCGTTCTGGAGAGTTTGTACACTAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7587</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>8977</contig_pos>
        <strand></strand>
        <context>TGKAAAAAAW[T/A]TTKTTTCAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTCAAGTAGGTGGCTTTTTTGGCGCGAAATTTGAAAATTTTGAAAAAAAT</left_flank>
        <right_flank>TTGTTTCAGATTTCTAAAAATCTTAAAATTTTAAGAACTCAAATTTTTTT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGATAGCTGAAAATTGCTAATTATTACATTGTTCAAAATAAATTTTCACACATTTTGATGTTTTTCGTTTTTTCATAGCTATTGTAGTTTTGGAGATATGCGCCTTTAAAGAAGCCCCCATTCTCGGTAGGGGAGATTGTCTGCGTTTCTTTAAACTTGTATATCTCAAAAACTACGGTACCTACTACAAAGTTGTCAACTACAAATATGTGTAAAATTTTATGCTGAGTAATTTTGTAGTTGACAACTTCTTCCTAGCTATTGTACTTTTTGAGTTACGCGTCTTTAAAAATGACTCATCTTTCAGAACTACTCGGACTGCGAGAAGAAGCACTTCCTGGATGTGGCCTACGAGAACAATTGGGGGACTACGGTAGCAGCGAACAAATTCAATCGTGTCTGGGGAAAAGGACCAACAAGACGCATGTTTTATTGGTGGAGAGGACAATTCAAGTAGGTGGCTTTTTTGGCGCGAAATTTGAAAATTTTGAAAAAAATTTTGTTTCAGATTTCTAAAAATCTTAAAATTTTAAGAACTCAAATTTTTTTCAGAAAAGAGCACGACCGTGACCAAATCGTTCTGGAGAGTTTGTACACTAAGAAAAGAGAGGGATCCAAGAAATTGGCGGATTACTGTAGAAATCCAGAGGGTCTGGCAGATGAGAAAACTGCAAAAGACGCTCAACAATGTCTGAAGGATCTGGAAGCGAATGATAAGGAAATCGAGAGTCTTATCAATAAAAAGTGAGCAATTTTTTCTGGAAAAATCTGGAATTAAAAAAAATGTTTTTTTGAAAAAACATTTTTTCTTTAAATTTCTAGACGTTTTCCAGATTTTTTTTGAAGATTGCTCAGCTTAAAAAAACTCGAAATATTCTAGAAAACTCATGGCTTGCTCGATAACCGGCGAAAAATGCGCGCACGGAAACGGAATTCAAGAGGATACGGTGGCCCGAAAATTCACGACCCCATTCGTATGTGCTCACTGTGAAATGCCGT</canonical>
            <polymorphic>AAGATAGCTGAAAATTGCTAATTATTACATTGTTCAAAATAAATTTTCACACATTTTGATGTTTTTCGTTTTTTCATAGCTATTGTAGTTTTGGAGATATGCGCCTTTAAAGAAGCCCCCATTCTCGGTAGGGGAGATTGTCTGCGTTTCTTTAAACTTGTATATCTCAAAAACTACGGTACCTACTACAAAGTTGTCAACTACAAATATGTGTAAAATTTTATGCTGAGTAATTTTGTAGTTGACAACTTCTTCCTAGCTATTGTACTTTTTGAGTTACGCGTCTTTAAAAATGACTCATCTTTCAGAACTACTCGGACTGCGAGAAGAAGCACTTCCTGGATGTGGCCTACGAGAACAATTGGGGGACTACGGTAGCAGCGAACAAATTCAATCGTGTCTGGGGAAAAGGACCAACAAGACGCATGTTTTATTGGTGGAGAGGACAATTCAAGTAGGTGGCTTTTTTGGCGCGAAATTTGAAAATTTTGAAAAAAATWTTGTTTCAGATTTCTAAAAATCTTAAAATTTTAAGAACTCAAATTTTTTTCAGAAAAGAGCACGACCGTGACCAAATCGTTCTGGAGAGTTTGTACACTAAGAAAAGAGAGGGATCCAAGAAATTGGCGGATTACTGTAGAAATCCAGAGGGTCTGGCAGATGAGAAAACTGCAAAAGACGCTCAACAATGTCTGAAGGATCTGGAAGCGAATGATAAGGAAATCGAGAGTCTTATCAATAAAAAGTGAGCAATTTTTTCTGGAAAAATCTGGAATTAAAAAAAATGTTTTTTTGAAAAAACATTTTTTCTTTAAATTTCTAGACGTTTTCCAGATTTTTTTTGAAGATTGCTCAGCTTAAAAAAACTCGAAATATTCTAGAAAACTCATGGCTTGCTCGATAACCGGCGAAAAATGCGCGCACGGAAACGGAATTCAAGAGGATACGGTGGCCCGAAAATTCACGACCCCATTCGTATGTGCTCACTGTGAAATGCCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>273 175 171 118 89 42 41 30 26 15 12 8</canonical_bands>
                <polymorphic_bands>273 175 171 118 89 42 42 41 26 15 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>175 130 128 118 80 60 42 41 30 29 28 26 22 22 15 15 12 12 8 7</canonical_bands>
                <polymorphic_bands>175 130 128 118 80 60 42 42 41 29 28 26 22 22 15 15 12 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAACAATTGGGGGACTAC</pcr_primer_p1>
		<pcr_primer_p2>TCTTAGTGTACAAACTCTCCAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGAACAATTGGGGGACTACGGTAGCAGCGAACAAATTCAATCGTGTCTGGGGAAAAGGACCAACAAGACGCATGTTTTATTGGTGGAGAGGACAATTCAAGTAGGTGGCTTTTTTGGCGCGAAATTTGAAAATTTTGAAAAAAATTTTGTTTCAGATTTCTAAAAATCTTAAAATTTTAAGAACTCAAATTTTTTTCAGAAAAGAGCACGACCGTGACCAAATCGTTCTGGAGAGTTTGTACACTAAGA</canonical_amplicon>
		<polymorphic_amplicon>GAGAACAATTGGGGGACTACGGTAGCAGCGAACAAATTCAATCGTGTCTGGGGAAAAGGACCAACAAGACGCATGTTTTATTGGTGGAGAGGACAATTCAAGTAGGTGGCTTTTTTGGCGCGAAATTTGAAAATTTTGAAAAAAATWTTGTTTCAGATTTCTAAAAATCTTAAAATTTTAAGAACTCAAATTTTTTTCAGAAAAGAGCACGACCGTGACCAAATCGTTCTGGAGAGTTTGTACACTAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7588</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>8976</contig_pos>
        <strand>+</strand>
        <context>TTGKAAAAAA[A/T]WTTKTTTCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTCAAGTAGGTGGCTTTTTTGGCGCGAAATTTGAAAATTTTGAAAAAAA</left_flank>
        <right_flank>TTTGTTTCAGATTTCTAAAAATCTTAAAATTTTAAGAACTCAAATTTTTT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGATAGCTGAAAATTGCTAATTATTACATTGTTCAAAATAAATTTTCACACATTTTGATGTTTTTCGTTTTTTCATAGCTATTGTAGTTTTGGAGATATGCGCCTTTAAAGAAGCCCCCATTCTCGGTAGGGGAGATTGTCTGCGTTTCTTTAAACTTGTATATCTCAAAAACTACGGTACCTACTACAAAGTTGTCAACTACAAATATGTGTAAAATTTTATGCTGAGTAATTTTGTAGTTGACAACTTCTTCCTAGCTATTGTACTTTTTGAGTTACGCGTCTTTAAAAATGACTCATCTTTCAGAACTACTCGGACTGCGAGAAGAAGCACTTCCTGGATGTGGCCTACGAGAACAATTGGGGGACTACGGTAGCAGCGAACAAATTCAATCGTGTCTGGGGAAAAGGACCAACAAGACGCATGTTTTATTGGTGGAGAGGACAATTCAAGTAGGTGGCTTTTTTGGCGCGAAATTTGAAAATTTTGAAAAAAATTTTGTTTCAGATTTCTAAAAATCTTAAAATTTTAAGAACTCAAATTTTTTTCAGAAAAGAGCACGACCGTGACCAAATCGTTCTGGAGAGTTTGTACACTAAGAAAAGAGAGGGATCCAAGAAATTGGCGGATTACTGTAGAAATCCAGAGGGTCTGGCAGATGAGAAAACTGCAAAAGACGCTCAACAATGTCTGAAGGATCTGGAAGCGAATGATAAGGAAATCGAGAGTCTTATCAATAAAAAGTGAGCAATTTTTTCTGGAAAAATCTGGAATTAAAAAAAATGTTTTTTTGAAAAAACATTTTTTCTTTAAATTTCTAGACGTTTTCCAGATTTTTTTTGAAGATTGCTCAGCTTAAAAAAACTCGAAATATTCTAGAAAACTCATGGCTTGCTCGATAACCGGCGAAAAATGCGCGCACGGAAACGGAATTCAAGAGGATACGGTGGCCCGAAAATTCACGACCCCATTCGTATGTGCTCACTGTGAAATGCCG</canonical>
            <polymorphic>AAAGATAGCTGAAAATTGCTAATTATTACATTGTTCAAAATAAATTTTCACACATTTTGATGTTTTTCGTTTTTTCATAGCTATTGTAGTTTTGGAGATATGCGCCTTTAAAGAAGCCCCCATTCTCGGTAGGGGAGATTGTCTGCGTTTCTTTAAACTTGTATATCTCAAAAACTACGGTACCTACTACAAAGTTGTCAACTACAAATATGTGTAAAATTTTATGCTGAGTAATTTTGTAGTTGACAACTTCTTCCTAGCTATTGTACTTTTTGAGTTACGCGTCTTTAAAAATGACTCATCTTTCAGAACTACTCGGACTGCGAGAAGAAGCACTTCCTGGATGTGGCCTACGAGAACAATTGGGGGACTACGGTAGCAGCGAACAAATTCAATCGTGTCTGGGGAAAAGGACCAACAAGACGCATGTTTTATTGGTGGAGAGGACAATTCAAGTAGGTGGCTTTTTTGGCGCGAAATTTGAAAATTTTGAAAAAAAWTTTGTTTCAGATTTCTAAAAATCTTAAAATTTTAAGAACTCAAATTTTTTTCAGAAAAGAGCACGACCGTGACCAAATCGTTCTGGAGAGTTTGTACACTAAGAAAAGAGAGGGATCCAAGAAATTGGCGGATTACTGTAGAAATCCAGAGGGTCTGGCAGATGAGAAAACTGCAAAAGACGCTCAACAATGTCTGAAGGATCTGGAAGCGAATGATAAGGAAATCGAGAGTCTTATCAATAAAAAGTGAGCAATTTTTTCTGGAAAAATCTGGAATTAAAAAAAATGTTTTTTTGAAAAAACATTTTTTCTTTAAATTTCTAGACGTTTTCCAGATTTTTTTTGAAGATTGCTCAGCTTAAAAAAACTCGAAATATTCTAGAAAACTCATGGCTTGCTCGATAACCGGCGAAAAATGCGCGCACGGAAACGGAATTCAAGAGGATACGGTGGCCCGAAAATTCACGACCCCATTCGTATGTGCTCACTGTGAAATGCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>273 175 171 118 89 42 41 30 26 15 12 8</canonical_bands>
                <polymorphic_bands>273 175 171 118 89 42 42 41 26 15 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>175 130 128 118 80 60 41 41 30 29 28 26 22 22 15 15 13 12 8 7</canonical_bands>
                <polymorphic_bands>175 130 128 118 80 60 42 41 41 29 28 26 22 22 15 15 13 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAACAATTGGGGGACTAC</pcr_primer_p1>
		<pcr_primer_p2>TCTTAGTGTACAAACTCTCCAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGAACAATTGGGGGACTACGGTAGCAGCGAACAAATTCAATCGTGTCTGGGGAAAAGGACCAACAAGACGCATGTTTTATTGGTGGAGAGGACAATTCAAGTAGGTGGCTTTTTTGGCGCGAAATTTGAAAATTTTGAAAAAAATTTTGTTTCAGATTTCTAAAAATCTTAAAATTTTAAGAACTCAAATTTTTTTCAGAAAAGAGCACGACCGTGACCAAATCGTTCTGGAGAGTTTGTACACTAAGA</canonical_amplicon>
		<polymorphic_amplicon>GAGAACAATTGGGGGACTACGGTAGCAGCGAACAAATTCAATCGTGTCTGGGGAAAAGGACCAACAAGACGCATGTTTTATTGGTGGAGAGGACAATTCAAGTAGGTGGCTTTTTTGGCGCGAAATTTGAAAATTTTGAAAAAAAWTTTGTTTCAGATTTCTAAAAATCTTAAAATTTTAAGAACTCAAATTTTTTTCAGAAAAGAGCACGACCGTGACCAAATCGTTCTGGAGAGTTTGTACACTAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7589</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>8935</contig_pos>
        <strand>+</strand>
        <context>AATTCAAGTA[A/G]GTGGCTTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGGACCAACAAGACGCATGTTTTATTGGTGGAGAGGACAATTCAAGTA</left_flank>
        <right_flank>GTGGCTTTTTTGGCGCGAAATTTGAAAATTTTGAAAAAAATTTTGTTTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTGCCAATTTTTGAAAGGTGCATACCTCAAAAACCGGGAAAGATAGCTGAAAATTGCTAATTATTACATTGTTCAAAATAAATTTTCACACATTTTGATGTTTTTCGTTTTTTCATAGCTATTGTAGTTTTGGAGATATGCGCCTTTAAAGAAGCCCCCATTCTCGGTAGGGGAGATTGTCTGCGTTTCTTTAAACTTGTATATCTCAAAAACTACGGTACCTACTACAAAGTTGTCAACTACAAATATGTGTAAAATTTTATGCTGAGTAATTTTGTAGTTGACAACTTCTTCCTAGCTATTGTACTTTTTGAGTTACGCGTCTTTAAAAATGACTCATCTTTCAGAACTACTCGGACTGCGAGAAGAAGCACTTCCTGGATGTGGCCTACGAGAACAATTGGGGGACTACGGTAGCAGCGAACAAATTCAATCGTGTCTGGGGAAAAGGACCAACAAGACGCATGTTTTATTGGTGGAGAGGACAATTCAAGTAGGTGGCTTTTTTGGCGCGAAATTTGAAAATTTTGAAAAAAATTTTGTTTCAGATTTCTAAAAATCTTAAAATTTTAAGAACTCAAATTTTTTTCAGAAAAGAGCACGACCGTGACCAAATCGTTCTGGAGAGTTTGTACACTAAGAAAAGAGAGGGATCCAAGAAATTGGCGGATTACTGTAGAAATCCAGAGGGTCTGGCAGATGAGAAAACTGCAAAAGACGCTCAACAATGTCTGAAGGATCTGGAAGCGAATGATAAGGAAATCGAGAGTCTTATCAATAAAAAGTGAGCAATTTTTTCTGGAAAAATCTGGAATTAAAAAAAATGTTTTTTTGAAAAAACATTTTTTCTTTAAATTTCTAGACGTTTTCCAGATTTTTTTTGAAGATTGCTCAGCTTAAAAAAACTCGAAATATTCTAGAAAACTCATGGCTTGCTCGATAACCGGCGAAAAATGCGCGCACGGAAACGGAATTCAAGAGGATACGGTGGCCCGAA</canonical>
            <polymorphic>AAATTGCCAATTTTTGAAAGGTGCATACCTCAAAAACCGGGAAAGATAGCTGAAAATTGCTAATTATTACATTGTTCAAAATAAATTTTCACACATTTTGATGTTTTTCGTTTTTTCATAGCTATTGTAGTTTTGGAGATATGCGCCTTTAAAGAAGCCCCCATTCTCGGTAGGGGAGATTGTCTGCGTTTCTTTAAACTTGTATATCTCAAAAACTACGGTACCTACTACAAAGTTGTCAACTACAAATATGTGTAAAATTTTATGCTGAGTAATTTTGTAGTTGACAACTTCTTCCTAGCTATTGTACTTTTTGAGTTACGCGTCTTTAAAAATGACTCATCTTTCAGAACTACTCGGACTGCGAGAAGAAGCACTTCCTGGATGTGGCCTACGAGAACAATTGGGGGACTACGGTAGCAGCGAACAAATTCAATCGTGTCTGGGGAAAAGGACCAACAAGACGCATGTTTTATTGGTGGAGAGGACAATTCAAGTARGTGGCTTTTTTGGCGCGAAATTTGAAAATTTTGAAAAAAATTTTGTTTCAGATTTCTAAAAATCTTAAAATTTTAAGAACTCAAATTTTTTTCAGAAAAGAGCACGACCGTGACCAAATCGTTCTGGAGAGTTTGTACACTAAGAAAAGAGAGGGATCCAAGAAATTGGCGGATTACTGTAGAAATCCAGAGGGTCTGGCAGATGAGAAAACTGCAAAAGACGCTCAACAATGTCTGAAGGATCTGGAAGCGAATGATAAGGAAATCGAGAGTCTTATCAATAAAAAGTGAGCAATTTTTTCTGGAAAAATCTGGAATTAAAAAAAATGTTTTTTTGAAAAAACATTTTTTCTTTAAATTTCTAGACGTTTTCCAGATTTTTTTTGAAGATTGCTCAGCTTAAAAAAACTCGAAATATTCTAGAAAACTCATGGCTTGCTCGATAACCGGCGAAAAATGCGCGCACGGAAACGGAATTCAAGAGGATACGGTGGCCCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAACAATTGGGGGACTAC</pcr_primer_p1>
		<pcr_primer_p2>TCTTAGTGTACAAACTCTCCAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGAACAATTGGGGGACTACGGTAGCAGCGAACAAATTCAATCGTGTCTGGGGAAAAGGACCAACAAGACGCATGTTTTATTGGTGGAGAGGACAATTCAAGTAGGTGGCTTTTTTGGCGCGAAATTTGAAAATTTTGAAAAAAATTTTGTTTCAGATTTCTAAAAATCTTAAAATTTTAAGAACTCAAATTTTTTTCAGAAAAGAGCACGACCGTGACCAAATCGTTCTGGAGAGTTTGTACACTAAGA</canonical_amplicon>
		<polymorphic_amplicon>GAGAACAATTGGGGGACTACGGTAGCAGCGAACAAATTCAATCGTGTCTGGGGAAAAGGACCAACAAGACGCATGTTTTATTGGTGGAGAGGACAATTCAAGTARGTGGCTTTTTTGGCGCGAAATTTGAAAATTTTGAAAAAAATTTTGTTTCAGATTTCTAAAAATCTTAAAATTTTAAGAACTCAAATTTTTTTCAGAAAAGAGCACGACCGTGACCAAATCGTTCTGGAGAGTTTGTACACTAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7590</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>8772</contig_pos>
        <strand></strand>
        <context>ctttaaaaat[G/A]actcatcttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACAACTTCTTCCTAGCTATTGTACTTTTTGAGTTACGCGTCTTTAAAAAT</left_flank>
        <right_flank>ACTCATCTTTCAGAACTACTCGGACTGCGAGAAGAAGCACTTCCTGGATG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTCTGCTTGTCTGCGTCTTAACCTTTGAAATTTGAAATTTTCGTTAATTTTTGATAAAACTGAAAAAGCATTAACATAATAAGGGTAAAAAGATAAGGAAAATTTGTATTTGAAAAAAAGAAAAAAAATACGTTTCCAAATTTTTTAAAAATAATTTTACAAAATTGCCAATTTTTGAAAGGTGCATACCTCAAAAACCGGGAAAGATAGCTGAAAATTGCTAATTATTACATTGTTCAAAATAAATTTTCACACATTTTGATGTTTTTCGTTTTTTCATAGCTATTGTAGTTTTGGAGATATGCGCCTTTAAAGAAGCCCCCATTCTCGGTAGGGGAGATTGTCTGCGTTTCTTTAAACTTGTATATCTCAAAAACTACGGTACCTACTACAAAGTTGTCAACTACAAATATGTGTAAAATTTTATGCTGAGTAATTTTGTAGTTGACAACTTCTTCCTAGCTATTGTACTTTTTGAGTTACGCGTCTTTAAAAATGACTCATCTTTCAGAACTACTCGGACTGCGAGAAGAAGCACTTCCTGGATGTGGCCTACGAGAACAATTGGGGGACTACGGTAGCAGCGAACAAATTCAATCGTGTCTGGGGAAAAGGACCAACAAGACGCATGTTTTATTGGTGGAGAGGACAATTCAAGTAGGTGGCTTTTTTGGCGCGAAATTTGAAAATTTTGAAAAAAATTTTGTTTCAGATTTCTAAAAATCTTAAAATTTTAAGAACTCAAATTTTTTTCAGAAAAGAGCACGACCGTGACCAAATCGTTCTGGAGAGTTTGTACACTAAGAAAAGAGAGGGATCCAAGAAATTGGCGGATTACTGTAGAAATCCAGAGGGTCTGGCAGATGAGAAAACTGCAAAAGACGCTCAACAATGTCTGAAGGATCTGGAAGCGAATGATAAGGAAATCGAGAGTCTTATCAATAAAAAGTGAGCAATTTTTTCTGGAAAAATCTGGAATTAAAAAAAATGTTTTTTTG</canonical>
            <polymorphic>CAGTCTGCTTGTCTGCGTCTTAACCTTTGAAATTTGAAATTTTCGTTAATTTTTGATAAAACTGAAAAAGCATTAACATAATAAGGGTAAAAAGATAAGGAAAATTTGTATTTGAAAAAAAGAAAAAAAATACGTTTCCAAATTTTTTAAAAATAATTTTACAAAATTGCCAATTTTTGAAAGGTGCATACCTCAAAAACCGGGAAAGATAGCTGAAAATTGCTAATTATTACATTGTTCAAAATAAATTTTCACACATTTTGATGTTTTTCGTTTTTTCATAGCTATTGTAGTTTTGGAGATATGCGCCTTTAAAGAAGCCCCCATTCTCGGTAGGGGAGATTGTCTGCGTTTCTTTAAACTTGTATATCTCAAAAACTACGGTACCTACTACAAAGTTGTCAACTACAAATATGTGTAAAATTTTATGCTGAGTAATTTTGTAGTTGACAACTTCTTCCTAGCTATTGTACTTTTTGAGTTACGCGTCTTTAAAAATRACTCATCTTTCAGAACTACTCGGACTGCGAGAAGAAGCACTTCCTGGATGTGGCCTACGAGAACAATTGGGGGACTACGGTAGCAGCGAACAAATTCAATCGTGTCTGGGGAAAAGGACCAACAAGACGCATGTTTTATTGGTGGAGAGGACAATTCAAGTAGGTGGCTTTTTTGGCGCGAAATTTGAAAATTTTGAAAAAAATTTTGTTTCAGATTTCTAAAAATCTTAAAATTTTAAGAACTCAAATTTTTTTCAGAAAAGAGCACGACCGTGACCAAATCGTTCTGGAGAGTTTGTACACTAAGAAAAGAGAGGGATCCAAGAAATTGGCGGATTACTGTAGAAATCCAGAGGGTCTGGCAGATGAGAAAACTGCAAAAGACGCTCAACAATGTCTGAAGGATCTGGAAGCGAATGATAAGGAAATCGAGAGTCTTATCAATAAAAAGTGAGCAATTTTTTCTGGAAAAATCTGGAATTAAAAAAAATGTTTTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>500 433 67</canonical_bands>
                <polymorphic_bands>933 67</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGATAAGGAAAATTTGTATTTGAA</pcr_primer_p1>
		<pcr_primer_p2>GTAGTCCCCCAATTGTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>487</pcr_amplicon_size>
		<canonical_amplicon>AAGATAAGGAAAATTTGTATTTGAAAAAAAGAAAAAAAATACGTTTCCAAATTTTTTAAAAATAATTTTACAAAATTGCCAATTTTTGAAAGGTGCATACCTCAAAAACCGGGAAAGATAGCTGAAAATTGCTAATTATTACATTGTTCAAAATAAATTTTCACACATTTTGATGTTTTTCGTTTTTTCATAGCTATTGTAGTTTTGGAGATATGCGCCTTTAAAGAAGCCCCCATTCTCGGTAGGGGAGATTGTCTGCGTTTCTTTAAACTTGTATATCTCAAAAACTACGGTACCTACTACAAAGTTGTCAACTACAAATATGTGTAAAATTTTATGCTGAGTAATTTTGTAGTTGACAACTTCTTCCTAGCTATTGTACTTTTTGAGTTACGCGTCTTTAAAAATGACTCATCTTTCAGAACTACTCGGACTGCGAGAAGAAGCACTTCCTGGATGTGGCCTACGAGAACAATTGGGGGACTAC</canonical_amplicon>
		<polymorphic_amplicon>AAGATAAGGAAAATTTGTATTTGAAAAAAAGAAAAAAAATACGTTTCCAAATTTTTTAAAAATAATTTTACAAAATTGCCAATTTTTGAAAGGTGCATACCTCAAAAACCGGGAAAGATAGCTGAAAATTGCTAATTATTACATTGTTCAAAATAAATTTTCACACATTTTGATGTTTTTCGTTTTTTCATAGCTATTGTAGTTTTGGAGATATGCGCCTTTAAAGAAGCCCCCATTCTCGGTAGGGGAGATTGTCTGCGTTTCTTTAAACTTGTATATCTCAAAAACTACGGTACCTACTACAAAGTTGTCAACTACAAATATGTGTAAAATTTTATGCTGAGTAATTTTGTAGTTGACAACTTCTTCCTAGCTATTGTACTTTTTGAGTTACGCGTCTTTAAAAATRACTCATCTTTCAGAACTACTCGGACTGCGAGAAGAAGCACTTCCTGGATGTGGCCTACGAGAACAATTGGGGGACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7592</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>20145</contig_pos>
        <strand>+</strand>
        <context>AGAAGCTCCA[A/T]AAAGTGGCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGTGATGAGACCGAAGAACATTCTGGAAAATTTCCTATAAGAAGCTCCA</left_flank>
        <right_flank>AAAGTGGCTTTCTACGACTAGTTTAAGCAAAGTTAGGGTCAAAACTAGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAGATTTTCAAAATGTTGAGTTTGAAAGAAGTTACAGTCCAAAATGTAATGGAGCCAGGTGTAAGCTACCGCTATGCATCAGAATTTACCCTGTAACTTCCTTCAAACCCAACATTTTTGAAAAATTCAAAAAGTGAAATGTAGCATTTGAAAAGCGTTACCTGCCTACTATTAAAGAAAATCAATTAGATTCAGTTTTTCCTCTATTTCTTTCTGTTTTTTCCTCCTATTAATCAGAAATTGTTTTTCTATATCAAAATCCTGGTCATCATCATCATCATCATCTTCTTCTTCTTCTTCCTGTTCTTCATTACGTTCAAATTCAAAACCTCTGGCCCAAGCCCTCAATCTCAATCGTGGGCAGCACATTTGAATGAATATAAACAGTATTAAGCAGATGAAAAACATAACAACGCAAAATGAGAAGGTATTCAAAATTGTTTCGAGTGTGATGAGACCGAAGAACATTCTGGAAAATTTCCTATAAGAAGCTCCATAAAGTGGCTTTCTACGACTAGTTTAAGCAAAGTTAGGGTCAAAACTAGTTTAAAAGAACGGTTTTTGAATTTTTGGCCTTAATTTTGATTCAATCAAAAATTTAATATTGAATTTAAATTCAGCAAAGTGAGAGCTTCGAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTCATTTTGGAGGCGCGTCGCGGTCGTGCGTCGCGTGCCGACGAGAAATTTTAAAGTGGCCGTTTAGGCTCATTATGAAGCTAACAAGGAGACCTTTGCACTAGCTACGATTTTAGTATGAAATATTAGACTACAAACTACAAATTAAGACACCTTGAGCGCTGGTGAAGGGCTTCCTTCCTTAAAGGCGCATATCTCAAAAACTACAGTATCCAGATAAAAACGTTCAACAGCAAAACTGTCTGAAATTTAACGTTGAGCATTGTTGTAGTTGAAAATTTTTGTCTAGGTACCGTAGTTTTTGAGATATGAGTCTTTAACAAGAAG</canonical>
            <polymorphic>TTTGAGATTTTCAAAATGTTGAGTTTGAAAGAAGTTACAGTCCAAAATGTAATGGAGCCAGGTGTAAGCTACCGCTATGCATCAGAATTTACCCTGTAACTTCCTTCAAACCCAACATTTTTGAAAAATTCAAAAAGTGAAATGTAGCATTTGAAAAGCGTTACCTGCCTACTATTAAAGAAAATCAATTAGATTCAGTTTTTCCTCTATTTCTTTCTGTTTTTTCCTCCTATTAATCAGAAATTGTTTTTCTATATCAAAATCCTGGTCATCATCATCATCATCATCTTCTTCTTCTTCTTCCTGTTCTTCATTACGTTCAAATTCAAAACCTCTGGCCCAAGCCCTCAATCTCAATCGTGGGCAGCACATTTGAATGAATATAAACAGTATTAAGCAGATGAAAAACATAACAACGCAAAATGAGAAGGTATTCAAAATTGTTTCGAGTGTGATGAGACCGAAGAACATTCTGGAAAATTTCCTATAAGAAGCTCCAWAAAGTGGCTTTCTACGACTAGTTTAAGCAAAGTTAGGGTCAAAACTAGTTTAAAAGAACGGTTTTTGAATTTTTGGCCTTAATTTTGATTCAATCAAAAATTTAATATTGAATTTAAATTCAGCAAAGTGAGAGCTTCGAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTCATTTTGGAGGCGCGTCGCGGTCGTGCGTCGCGTGCCGACGAGAAATTTTAAAGTGGCCGTTTAGGCTCATTATGAAGCTAACAAGGAGACCTTTGCACTAGCTACGATTTTAGTATGAAATATTAGACTACAAACTACAAATTAAGACACCTTGAGCGCTGGTGAAGGGCTTCCTTCCTTAAAGGCGCATATCTCAAAAACTACAGTATCCAGATAAAAACGTTCAACAGCAAAACTGTCTGAAATTTAACGTTGAGCATTGTTGTAGTTGAAAATTTTTGTCTAGGTACCGTAGTTTTTGAGATATGAGTCTTTAACAAGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTGATGAGACCGAAGAAC</pcr_primer_p1>
		<pcr_primer_p2>CTAAAATCGTAGCTAGTGCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>340</pcr_amplicon_size>
		<canonical_amplicon>GTGTGATGAGACCGAAGAACATTCTGGAAAATTTCCTATAAGAAGCTCCATAAAGTGGCTTTCTACGACTAGTTTAAGCAAAGTTAGGGTCAAAACTAGTTTAAAAGAACGGTTTTTGAATTTTTGGCCTTAATTTTGATTCAATCAAAAATTTAATATTGAATTTAAATTCAGCAAAGTGAGAGCTTCGAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTCATTTTGGAGGCGCGTCGCGGTCGTGCGTCGCGTGCCGACGAGAAATTTTAAAGTGGCCGTTTAGGCTCATTATGAAGCTAACAAGGAGACCTTTGCACTAGCTACGATTTTAG</canonical_amplicon>
		<polymorphic_amplicon>GTGTGATGAGACCGAAGAACATTCTGGAAAATTTCCTATAAGAAGCTCCAWAAAGTGGCTTTCTACGACTAGTTTAAGCAAAGTTAGGGTCAAAACTAGTTTAAAAGAACGGTTTTTGAATTTTTGGCCTTAATTTTGATTCAATCAAAAATTTAATATTGAATTTAAATTCAGCAAAGTGAGAGCTTCGAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTCATTTTGGAGGCGCGTCGCGGTCGTGCGTCGCGTGCCGACGAGAAATTTTAAAGTGGCCGTTTAGGCTCATTATGAAGCTAACAAGGAGACCTTTGCACTAGCTACGATTTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7593</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>22304</contig_pos>
        <strand></strand>
        <context>GCAATTGAGA[A/G]AAATGTGCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATTATCCACTTTTCATGAGCAATCGAAGTTAAGGATGAGCAATTGAGA</left_flank>
        <right_flank>AAATGTGCATTTTTAGCAGAAAATTTTAAGTATAATTTCAGCAAATTAAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTACTGTAGTTTTTGAGATATGCGCCTTTAAAGAGACGCAGACACTCTCCGNNNNNNNNNNCCTCAAAAACTTCAATACCTAACAAAAAAGTGTCAACTGCAAAATTGCTCAGCATAAAATTTTACACATTTTTGTAGCATTTTACGTTTTGATAGCTACTGTAGTTTTTGAGATATGTGACCTACAAAAATCAATAAAATCCGATTGACTTCAAACATTCGATGAGTCGCTTTTCCTGCTCTTCTCGATCTTTGAGAAGTTTCCCAGTGTCCTCCTCAAAATTTCCAGAATCTCCAGAATCTTCTGGAATCTTTAAAAAATCGTTCTCCTCGAAAATTCCAGATTTTTGAGCATTGGAAAAGCACTTATTGATAATCAAAAATAGAACAAATAGGAGAATAATGAAACCGAGGTACAAAAATAGCATTTTTGGCATTGCCATTGATCCAATTATCCACTTTTCATGAGCAATCGAAGTTAAGGATGAGCAATTGAGAAAAATGTGCATTTTTAGCAGAAAATTTTAAGTATAATTTCAGCAAATTAAGTTCTGAAAATCTGACAAAAAAGTGAAAATAGCGAAAATTGTTTATCTTTCCAGCTGCTTATAAATACTATTTTTGAGAAAGGTTAATCGAATTTTCTAGAATCTGAAAATCAGAAATATCATGTGATGTTTTAGCTGGAAAACAGGTGCAAATTTTTTGTTGATGGCTTGTGTGCCTGTTTTTTGCAAAATTCCAATTTTCAGATGCAACATCTCATTTTCAAGGTTTTAGACATCAAAAATTGAGTTCCTCATCAAACACTACCCCAGAAACTGAGAAAAAACGAACAATTACATGGTGGCCGAGTTTTAAAAATTTCTAGGCCACCAGATGCAAAAGTTAGGCCATGAGCGTTTTTTAGTCGGGAAAGCAGTTTTCTAGGCTATTTTTTCATGAAGAGCTTGAATATTGTGTGTGTTTTTCGCAAAAATTCATGGGAATACCAGAAAA</canonical>
            <polymorphic>GCTACTGTAGTTTTTGAGATATGCGCCTTTAAAGAGACGCAGACACTCTCCGNNNNNNNNNNCCTCAAAAACTTCAATACCTAACAAAAAAGTGTCAACTGCAAAATTGCTCAGCATAAAATTTTACACATTTTTGTAGCATTTTACGTTTTGATAGCTACTGTAGTTTTTGAGATATGTGACCTACAAAAATCAATAAAATCCGATTGACTTCAAACATTCGATGAGTCGCTTTTCCTGCTCTTCTCGATCTTTGAGAAGTTTCCCAGTGTCCTCCTCAAAATTTCCAGAATCTCCAGAATCTTCTGGAATCTTTAAAAAATCGTTCTCCTCGAAAATTCCAGATTTTTGAGCATTGGAAAAGCACTTATTGATAATCAAAAATAGAACAAATAGGAGAATAATGAAACCGAGGTACAAAAATAGCATTTTTGGCATTGCCATTGATCCAATTATCCACTTTTCATGAGCAATCGAAGTTAAGGATGAGCAATTGAGARAAATGTGCATTTTTAGCAGAAAATTTTAAGTATAATTTCAGCAAATTAAGTTCTGAAAATCTGACAAAAAAGTGAAAATAGCGAAAATTGTTTATCTTTCCAGCTGCTTATAAATACTATTTTTGAGAAAGGTTAATCGAATTTTCTAGAATCTGAAAATCAGAAATATCATGTGATGTTTTAGCTGGAAAACAGGTGCAAATTTTTTGTTGATGGCTTGTGTGCCTGTTTTTTGCAAAATTCCAATTTTCAGATGCAACATCTCATTTTCAAGGTTTTAGACATCAAAAATTGAGTTCCTCATCAAACACTACCCCAGAAACTGAGAAAAAACGAACAATTACATGGTGGCCGAGTTTTAAAAATTTCTAGGCCACCAGATGCAAAAGTTAGGCCATGAGCGTTTTTTAGTCGGGAAAGCAGTTTTCTAGGCTATTTTTTCATGAAGAGCTTGAATATTGTGTGTGTTTTTCGCAAAAATTCATGGGAATACCAGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTGGAAAAGCACTTATTGAT</pcr_primer_p1>
		<pcr_primer_p2>AGCTGGAAAGATAAACAATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CATTGGAAAAGCACTTATTGATAATCAAAAATAGAACAAATAGGAGAATAATGAAACCGAGGTACAAAAATAGCATTTTTGGCATTGCCATTGATCCAATTATCCACTTTTCATGAGCAATCGAAGTTAAGGATGAGCAATTGAGAAAAATGTGCATTTTTAGCAGAAAATTTTAAGTATAATTTCAGCAAATTAAGTTCTGAAAATCTGACAAAAAAGTGAAAATAGCGAAAATTGTTTATCTTTCCAGCT</canonical_amplicon>
		<polymorphic_amplicon>CATTGGAAAAGCACTTATTGATAATCAAAAATAGAACAAATAGGAGAATAATGAAACCGAGGTACAAAAATAGCATTTTTGGCATTGCCATTGATCCAATTATCCACTTTTCATGAGCAATCGAAGTTAAGGATGAGCAATTGAGARAAATGTGCATTTTTAGCAGAAAATTTTAAGTATAATTTCAGCAAATTAAGTTCTGAAAATCTGACAAAAAAGTGAAAATAGCGAAAATTGTTTATCTTTCCAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7594</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>22213</contig_pos>
        <strand></strand>
        <context>GAATAATGAA[A/T]CCGAGGTACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAAGCACTTATTGATAATCAAAAATAGAACAAATAGGAGAATAATGAA</left_flank>
        <right_flank>CCGAGGTACAAAAATAGCATTTTTGGCATTGCCATTGATCCAATTATCCA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATTTTTAAAAGACTTACTAACAAGTTACCAATTACAAAACTGTGTTAAATTCAATTTCACACATTTTTGTAATTGACAACTTTTTTCTAGCTACTGTAGTTTTTGAGATATGCGCCTTTAAAGAGACGCAGACACTCTCCGNNNNNNNNNNCCTCAAAAACTTCAATACCTAACAAAAAAGTGTCAACTGCAAAATTGCTCAGCATAAAATTTTACACATTTTTGTAGCATTTTACGTTTTGATAGCTACTGTAGTTTTTGAGATATGTGACCTACAAAAATCAATAAAATCCGATTGACTTCAAACATTCGATGAGTCGCTTTTCCTGCTCTTCTCGATCTTTGAGAAGTTTCCCAGTGTCCTCCTCAAAATTTCCAGAATCTCCAGAATCTTCTGGAATCTTTAAAAAATCGTTCTCCTCGAAAATTCCAGATTTTTGAGCATTGGAAAAGCACTTATTGATAATCAAAAATAGAACAAATAGGAGAATAATGAAACCGAGGTACAAAAATAGCATTTTTGGCATTGCCATTGATCCAATTATCCACTTTTCATGAGCAATCGAAGTTAAGGATGAGCAATTGAGAAAAATGTGCATTTTTAGCAGAAAATTTTAAGTATAATTTCAGCAAATTAAGTTCTGAAAATCTGACAAAAAAGTGAAAATAGCGAAAATTGTTTATCTTTCCAGCTGCTTATAAATACTATTTTTGAGAAAGGTTAATCGAATTTTCTAGAATCTGAAAATCAGAAATATCATGTGATGTTTTAGCTGGAAAACAGGTGCAAATTTTTTGTTGATGGCTTGTGTGCCTGTTTTTTGCAAAATTCCAATTTTCAGATGCAACATCTCATTTTCAAGGTTTTAGACATCAAAAATTGAGTTCCTCATCAAACACTACCCCAGAAACTGAGAAAAAACGAACAATTACATGGTGGCCGAGTTTTAAAAATTTCTAGGCCACCAGATGCAAAAGTTAGGCCATGAGCGTTTTTT</canonical>
            <polymorphic>TCATTTTTAAAAGACTTACTAACAAGTTACCAATTACAAAACTGTGTTAAATTCAATTTCACACATTTTTGTAATTGACAACTTTTTTCTAGCTACTGTAGTTTTTGAGATATGCGCCTTTAAAGAGACGCAGACACTCTCCGNNNNNNNNNNCCTCAAAAACTTCAATACCTAACAAAAAAGTGTCAACTGCAAAATTGCTCAGCATAAAATTTTACACATTTTTGTAGCATTTTACGTTTTGATAGCTACTGTAGTTTTTGAGATATGTGACCTACAAAAATCAATAAAATCCGATTGACTTCAAACATTCGATGAGTCGCTTTTCCTGCTCTTCTCGATCTTTGAGAAGTTTCCCAGTGTCCTCCTCAAAATTTCCAGAATCTCCAGAATCTTCTGGAATCTTTAAAAAATCGTTCTCCTCGAAAATTCCAGATTTTTGAGCATTGGAAAAGCACTTATTGATAATCAAAAATAGAACAAATAGGAGAATAATGAAWCCGAGGTACAAAAATAGCATTTTTGGCATTGCCATTGATCCAATTATCCACTTTTCATGAGCAATCGAAGTTAAGGATGAGCAATTGAGAAAAATGTGCATTTTTAGCAGAAAATTTTAAGTATAATTTCAGCAAATTAAGTTCTGAAAATCTGACAAAAAAGTGAAAATAGCGAAAATTGTTTATCTTTCCAGCTGCTTATAAATACTATTTTTGAGAAAGGTTAATCGAATTTTCTAGAATCTGAAAATCAGAAATATCATGTGATGTTTTAGCTGGAAAACAGGTGCAAATTTTTTGTTGATGGCTTGTGTGCCTGTTTTTTGCAAAATTCCAATTTTCAGATGCAACATCTCATTTTCAAGGTTTTAGACATCAAAAATTGAGTTCCTCATCAAACACTACCCCAGAAACTGAGAAAAAACGAACAATTACATGGTGGCCGAGTTTTAAAAATTTCTAGGCCACCAGATGCAAAAGTTAGGCCATGAGCGTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTGGAAAAGCACTTATTGAT</pcr_primer_p1>
		<pcr_primer_p2>AGCTGGAAAGATAAACAATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CATTGGAAAAGCACTTATTGATAATCAAAAATAGAACAAATAGGAGAATAATGAAACCGAGGTACAAAAATAGCATTTTTGGCATTGCCATTGATCCAATTATCCACTTTTCATGAGCAATCGAAGTTAAGGATGAGCAATTGAGAAAAATGTGCATTTTTAGCAGAAAATTTTAAGTATAATTTCAGCAAATTAAGTTCTGAAAATCTGACAAAAAAGTGAAAATAGCGAAAATTGTTTATCTTTCCAGCT</canonical_amplicon>
		<polymorphic_amplicon>CATTGGAAAAGCACTTATTGATAATCAAAAATAGAACAAATAGGAGAATAATGAAWCCGAGGTACAAAAATAGCATTTTTGGCATTGCCATTGATCCAATTATCCACTTTTCATGAGCAATCGAAGTTAAGGATGAGCAATTGAGAAAAATGTGCATTTTTAGCAGAAAATTTTAAGTATAATTTCAGCAAATTAAGTTCTGAAAATCTGACAAAAAAGTGAAAATAGCGAAAATTGTTTATCTTTCCAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7596</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>39112</contig_pos>
        <strand></strand>
        <context>TTGAAAAATT[C/T]AGATWTTTTY</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCAAAAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATT</left_flank>
        <right_flank>AGATATTTTTCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGTGAAAAAATCATGAAAATTGGACTAAAATGAGCCAAAATACCCCAAAATAGATGGAAACTGGCCTAAAAAGGGCCTGAAAAGCCTAAAAATAAGGCCTTACCAAACATTTCTTTTTGTTTGGAGAGCATATTGATAAAGGTATCTGGAACCTGCTTGAGACATCTATCGATTCGTTGGTCCTGAAAATTTTTTTTTTTGGATTACTGTAATTTTGATTACGGTAGTTGGAAAGTGTCAGTCTGTGTGTCTGTCTAAACAAAATTTATCTCGAGATCGATCGCAATTTCAAAATATTTCAAAATTTTTAATTTTTTTTGAAGCAGCAAAAATTTTTTTTGTAATTTTTTGATTACTGTAGTTTGGAGACTACTGTAATCACTTTTTCGGGTTTACTTGGGATTACTGCAGCTGGAATAGTGGCTGACGCATCAAAATTCTAACAGTTTCCAAAAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTCAGATATTTTTCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGAATGATTTTATCAGCAAAAGTTGCCAATTTTAAAAATTCTTTTAAAAAATTTGAAACAGTAATTTTTTTTTGGAATTTTCGGAAAACAAAACACTTTTTTGGATTACTGTAGTTACATCTTTTTGGCCTTTCGGGATTACTGTATTTTTAGAAACCGTACAATGATAGTATCCAAAGCATCAAAATAAGAACCTCTCTAAAATTTTCGAAAATTTAGAAATTTTTAACAGTAATTTTTTCCTTTTTTTTCGAAATTTTCAAAATACTACTGTAGTTTGGGAATTGCTGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCGCATCACAGTTTTAACAGTTTCCAAAAAATATCAAAAATATTTGAAACGGTATTTTTTTAAACACAAATTCAGATTT</canonical>
            <polymorphic>TAGTGAAAAAATCATGAAAATTGGACTAAAATGAGCCAAAATACCCCAAAATAGATGGAAACTGGCCTAAAAAGGGCCTGAAAAGCCTAAAAATAAGGCCTTACCAAACATTTCTTTTTGTTTGGAGAGCATATTGATAAAGGTATCTGGAACCTGCTTGAGACATCTATCGATTCGTTGGTCCTGAAAATTTTTTTTTTTGGATTACTGTAATTTTGATTACGGTAGTTGGAAAGTGTCAGTCTGTGTGTCTGTCTAAACAAAATTTATCTCGAGATCGATCGCAATTTCAAAATATTTCAAAATTTTTAATTTTTTTTGAAGCAGCAAAAATTTTTTTTGTAATTTTTTGATTACTGTAGTTTGGAGACTACTGTAATCACTTTTTCGGGTTTACTTGGGATTACTGCAGCTGGAATAGTGGCTGACGCATCAAAATTCTAACAGTTTCCAAAAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTYAGATATTTTTCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGAATGATTTTATCAGCAAAAGTTGCCAATTTTAAAAATTCTTTTAAAAAATTTGAAACAGTAATTTTTTTTTGGAATTTTCGGAAAACAAAACACTTTTTTGGATTACTGTAGTTACATCTTTTTGGCCTTTCGGGATTACTGTATTTTTAGAAACCGTACAATGATAGTATCCAAAGCATCAAAATAAGAACCTCTCTAAAATTTTCGAAAATTTAGAAATTTTTAACAGTAATTTTTTCCTTTTTTTTCGAAATTTTCAAAATACTACTGTAGTTTGGGAATTGCTGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCGCATCACAGTTTTAACAGTTTCCAAAAAATATCAAAAATATTTGAAACGGTATTTTTTTAAACACAAATTCAGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>188 142 134 127 105 75 59 40 34 28 26 13 11 10 8</canonical_bands>
                <polymorphic_bands>193 188 142 127 105 75 40 34 28 26 13 11 10 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>501 319 164 11 5</canonical_bands>
                <polymorphic_bands>512 319 164 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGATTACTGTAGTTTGGAGA</pcr_primer_p1>
		<pcr_primer_p2>TCTAACAGACGCGTTTCTAATAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGATTACTGTAGTTTGGAGACTACTGTAATCACTTTTTCGGGTTTACTTGGGATTACTGCAGCTGGAATAGTGGCTGACGCATCAAAATTCTAACAGTTTCCAAAAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTCAGATATTTTTCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGATTACTGTAGTTTGGAGACTACTGTAATCACTTTTTCGGGTTTACTTGGGATTACTGCAGCTGGAATAGTGGCTGACGCATCAAAATTCTAACAGTTTCCAAAAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTYAGATATTTTTCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7597</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>39117</contig_pos>
        <strand></strand>
        <context>AAATTYAGAT[A/T]TTTTYCGGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTCAGAT</left_flank>
        <right_flank>TTTTTCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAATCATGAAAATTGGACTAAAATGAGCCAAAATACCCCAAAATAGATGGAAACTGGCCTAAAAAGGGCCTGAAAAGCCTAAAAATAAGGCCTTACCAAACATTTCTTTTTGTTTGGAGAGCATATTGATAAAGGTATCTGGAACCTGCTTGAGACATCTATCGATTCGTTGGTCCTGAAAATTTTTTTTTTTGGATTACTGTAATTTTGATTACGGTAGTTGGAAAGTGTCAGTCTGTGTGTCTGTCTAAACAAAATTTATCTCGAGATCGATCGCAATTTCAAAATATTTCAAAATTTTTAATTTTTTTTGAAGCAGCAAAAATTTTTTTTGTAATTTTTTGATTACTGTAGTTTGGAGACTACTGTAATCACTTTTTCGGGTTTACTTGGGATTACTGCAGCTGGAATAGTGGCTGACGCATCAAAATTCTAACAGTTTCCAAAAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTCAGATATTTTTCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGAATGATTTTATCAGCAAAAGTTGCCAATTTTAAAAATTCTTTTAAAAAATTTGAAACAGTAATTTTTTTTTGGAATTTTCGGAAAACAAAACACTTTTTTGGATTACTGTAGTTACATCTTTTTGGCCTTTCGGGATTACTGTATTTTTAGAAACCGTACAATGATAGTATCCAAAGCATCAAAATAAGAACCTCTCTAAAATTTTCGAAAATTTAGAAATTTTTAACAGTAATTTTTTCCTTTTTTTTCGAAATTTTCAAAATACTACTGTAGTTTGGGAATTGCTGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCGCATCACAGTTTTAACAGTTTCCAAAAAATATCAAAAATATTTGAAACGGTATTTTTTTAAACACAAATTCAGATTTTTTTT</canonical>
            <polymorphic>AAAAAATCATGAAAATTGGACTAAAATGAGCCAAAATACCCCAAAATAGATGGAAACTGGCCTAAAAAGGGCCTGAAAAGCCTAAAAATAAGGCCTTACCAAACATTTCTTTTTGTTTGGAGAGCATATTGATAAAGGTATCTGGAACCTGCTTGAGACATCTATCGATTCGTTGGTCCTGAAAATTTTTTTTTTTGGATTACTGTAATTTTGATTACGGTAGTTGGAAAGTGTCAGTCTGTGTGTCTGTCTAAACAAAATTTATCTCGAGATCGATCGCAATTTCAAAATATTTCAAAATTTTTAATTTTTTTTGAAGCAGCAAAAATTTTTTTTGTAATTTTTTGATTACTGTAGTTTGGAGACTACTGTAATCACTTTTTCGGGTTTACTTGGGATTACTGCAGCTGGAATAGTGGCTGACGCATCAAAATTCTAACAGTTTCCAAAAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTCAGATWTTTTTCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGAATGATTTTATCAGCAAAAGTTGCCAATTTTAAAAATTCTTTTAAAAAATTTGAAACAGTAATTTTTTTTTGGAATTTTCGGAAAACAAAACACTTTTTTGGATTACTGTAGTTACATCTTTTTGGCCTTTCGGGATTACTGTATTTTTAGAAACCGTACAATGATAGTATCCAAAGCATCAAAATAAGAACCTCTCTAAAATTTTCGAAAATTTAGAAATTTTTAACAGTAATTTTTTCCTTTTTTTTCGAAATTTTCAAAATACTACTGTAGTTTGGGAATTGCTGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCGCATCACAGTTTTAACAGTTTCCAAAAAATATCAAAAATATTTGAAACGGTATTTTTTTAAACACAAATTCAGATTTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGATTACTGTAGTTTGGAGA</pcr_primer_p1>
		<pcr_primer_p2>TCTAACAGACGCGTTTCTAATAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGATTACTGTAGTTTGGAGACTACTGTAATCACTTTTTCGGGTTTACTTGGGATTACTGCAGCTGGAATAGTGGCTGACGCATCAAAATTCTAACAGTTTCCAAAAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTCAGATATTTTTCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGATTACTGTAGTTTGGAGACTACTGTAATCACTTTTTCGGGTTTACTTGGGATTACTGCAGCTGGAATAGTGGCTGACGCATCAAAATTCTAACAGTTTCCAAAAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTCAGATWTTTTTCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7598</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>39219</contig_pos>
        <strand>+</strand>
        <context>ATGATTTTAT[A/C]AGCAAAAGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGAATGATTTTAT</left_flank>
        <right_flank>AGCAAAAGTTGCCAATTTTAAAAATTCTTTTAAAAAATTTGAAACAGTAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATTTCTTTTTGTTTGGAGAGCATATTGATAAAGGTATCTGGAACCTGCTTGAGACATCTATCGATTCGTTGGTCCTGAAAATTTTTTTTTTTGGATTACTGTAATTTTGATTACGGTAGTTGGAAAGTGTCAGTCTGTGTGTCTGTCTAAACAAAATTTATCTCGAGATCGATCGCAATTTCAAAATATTTCAAAATTTTTAATTTTTTTTGAAGCAGCAAAAATTTTTTTTGTAATTTTTTGATTACTGTAGTTTGGAGACTACTGTAATCACTTTTTCGGGTTTACTTGGGATTACTGCAGCTGGAATAGTGGCTGACGCATCAAAATTCTAACAGTTTCCAAAAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTCAGATATTTTTCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGAATGATTTTATCAGCAAAAGTTGCCAATTTTAAAAATTCTTTTAAAAAATTTGAAACAGTAATTTTTTTTTGGAATTTTCGGAAAACAAAACACTTTTTTGGATTACTGTAGTTACATCTTTTTGGCCTTTCGGGATTACTGTATTTTTAGAAACCGTACAATGATAGTATCCAAAGCATCAAAATAAGAACCTCTCTAAAATTTTCGAAAATTTAGAAATTTTTAACAGTAATTTTTTCCTTTTTTTTCGAAATTTTCAAAATACTACTGTAGTTTGGGAATTGCTGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCGCATCACAGTTTTAACAGTTTCCAAAAAATATCAAAAATATTTGAAACGGTATTTTTTTAAACACAAATTCAGATTTTTTTTCGGATTACTGTAGTTTGGATCGTACTGTATTCATTTTTCTGGTCGGTATTTTTTGGTAATGTATCAGAAACGCGTCTGTTAGAATGTAGGTACCAGATTTTA</canonical>
            <polymorphic>ACATTTCTTTTTGTTTGGAGAGCATATTGATAAAGGTATCTGGAACCTGCTTGAGACATCTATCGATTCGTTGGTCCTGAAAATTTTTTTTTTTGGATTACTGTAATTTTGATTACGGTAGTTGGAAAGTGTCAGTCTGTGTGTCTGTCTAAACAAAATTTATCTCGAGATCGATCGCAATTTCAAAATATTTCAAAATTTTTAATTTTTTTTGAAGCAGCAAAAATTTTTTTTGTAATTTTTTGATTACTGTAGTTTGGAGACTACTGTAATCACTTTTTCGGGTTTACTTGGGATTACTGCAGCTGGAATAGTGGCTGACGCATCAAAATTCTAACAGTTTCCAAAAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTCAGATATTTTTCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGAATGATTTTATMAGCAAAAGTTGCCAATTTTAAAAATTCTTTTAAAAAATTTGAAACAGTAATTTTTTTTTGGAATTTTCGGAAAACAAAACACTTTTTTGGATTACTGTAGTTACATCTTTTTGGCCTTTCGGGATTACTGTATTTTTAGAAACCGTACAATGATAGTATCCAAAGCATCAAAATAAGAACCTCTCTAAAATTTTCGAAAATTTAGAAATTTTTAACAGTAATTTTTTCCTTTTTTTTCGAAATTTTCAAAATACTACTGTAGTTTGGGAATTGCTGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCGCATCACAGTTTTAACAGTTTCCAAAAAATATCAAAAATATTTGAAACGGTATTTTTTTAAACACAAATTCAGATTTTTTTTCGGATTACTGTAGTTTGGATCGTACTGTATTCATTTTTCTGGTCGGTATTTTTTGGTAATGTATCAGAAACGCGTCTGTTAGAATGTAGGTACCAGATTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATTTATTTTTCTGGTTTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCTTATTTTGATGCTTTGGATAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGAATGATTTTATCAGCAAAAGTTGCCAATTTTAAAAATTCTTTTAAAAAATTTGAAACAGTAATTTTTTTTTGGAATTTTCGGAAAACAAAACACTTTTTTGGATTACTGTAGTTACATCTTTTTGGCCTTTCGGGATTACTGTATTTTTAGAAACCGTACAATGATAGTATCCAAAGCATCAAAATAAGA</canonical_amplicon>
		<polymorphic_amplicon>TGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGAATGATTTTATMAGCAAAAGTTGCCAATTTTAAAAATTCTTTTAAAAAATTTGAAACAGTAATTTTTTTTTGGAATTTTCGGAAAACAAAACACTTTTTTGGATTACTGTAGTTACATCTTTTTGGCCTTTCGGGATTACTGTATTTTTAGAAACCGTACAATGATAGTATCCAAAGCATCAAAATAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7599</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>39240</contig_pos>
        <strand>+</strand>
        <context>GCCAATTTTA[A/T]AAATTCTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGAAACGCGTCTGTTAGAATGATTTTATCAGCAAAAGTTGCCAATTTTA</left_flank>
        <right_flank>AAATTCTTTTAAAAAATTTGAAACAGTAATTTTTTTTTGGAATTTTCGGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCATATTGATAAAGGTATCTGGAACCTGCTTGAGACATCTATCGATTCGTTGGTCCTGAAAATTTTTTTTTTTGGATTACTGTAATTTTGATTACGGTAGTTGGAAAGTGTCAGTCTGTGTGTCTGTCTAAACAAAATTTATCTCGAGATCGATCGCAATTTCAAAATATTTCAAAATTTTTAATTTTTTTTGAAGCAGCAAAAATTTTTTTTGTAATTTTTTGATTACTGTAGTTTGGAGACTACTGTAATCACTTTTTCGGGTTTACTTGGGATTACTGCAGCTGGAATAGTGGCTGACGCATCAAAATTCTAACAGTTTCCAAAAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTCAGATATTTTTCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGAATGATTTTATCAGCAAAAGTTGCCAATTTTAAAAATTCTTTTAAAAAATTTGAAACAGTAATTTTTTTTTGGAATTTTCGGAAAACAAAACACTTTTTTGGATTACTGTAGTTACATCTTTTTGGCCTTTCGGGATTACTGTATTTTTAGAAACCGTACAATGATAGTATCCAAAGCATCAAAATAAGAACCTCTCTAAAATTTTCGAAAATTTAGAAATTTTTAACAGTAATTTTTTCCTTTTTTTTCGAAATTTTCAAAATACTACTGTAGTTTGGGAATTGCTGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCGCATCACAGTTTTAACAGTTTCCAAAAAATATCAAAAATATTTGAAACGGTATTTTTTTAAACACAAATTCAGATTTTTTTTCGGATTACTGTAGTTTGGATCGTACTGTATTCATTTTTCTGGTCGGTATTTTTTGGTAATGTATCAGAAACGCGTCTGTTAGAATGTAGGTACCAGATTTTATCAGCAAACGTTGCCAATTTT</canonical>
            <polymorphic>GCATATTGATAAAGGTATCTGGAACCTGCTTGAGACATCTATCGATTCGTTGGTCCTGAAAATTTTTTTTTTTGGATTACTGTAATTTTGATTACGGTAGTTGGAAAGTGTCAGTCTGTGTGTCTGTCTAAACAAAATTTATCTCGAGATCGATCGCAATTTCAAAATATTTCAAAATTTTTAATTTTTTTTGAAGCAGCAAAAATTTTTTTTGTAATTTTTTGATTACTGTAGTTTGGAGACTACTGTAATCACTTTTTCGGGTTTACTTGGGATTACTGCAGCTGGAATAGTGGCTGACGCATCAAAATTCTAACAGTTTCCAAAAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTCAGATATTTTTCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGAATGATTTTATCAGCAAAAGTTGCCAATTTTAWAAATTCTTTTAAAAAATTTGAAACAGTAATTTTTTTTTGGAATTTTCGGAAAACAAAACACTTTTTTGGATTACTGTAGTTACATCTTTTTGGCCTTTCGGGATTACTGTATTTTTAGAAACCGTACAATGATAGTATCCAAAGCATCAAAATAAGAACCTCTCTAAAATTTTCGAAAATTTAGAAATTTTTAACAGTAATTTTTTCCTTTTTTTTCGAAATTTTCAAAATACTACTGTAGTTTGGGAATTGCTGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCGCATCACAGTTTTAACAGTTTCCAAAAAATATCAAAAATATTTGAAACGGTATTTTTTTAAACACAAATTCAGATTTTTTTTCGGATTACTGTAGTTTGGATCGTACTGTATTCATTTTTCTGGTCGGTATTTTTTGGTAATGTATCAGAAACGCGTCTGTTAGAATGTAGGTACCAGATTTTATCAGCAAACGTTGCCAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>498 344 146 12</canonical_bands>
                <polymorphic_bands>510 344 146</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>316 182 181 147 116 46 12</canonical_bands>
                <polymorphic_bands>328 182 181 147 116 46</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTATTTATTTTTCTGGTTTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCTTATTTTGATGCTTTGGATAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGAATGATTTTATCAGCAAAAGTTGCCAATTTTAAAAATTCTTTTAAAAAATTTGAAACAGTAATTTTTTTTTGGAATTTTCGGAAAACAAAACACTTTTTTGGATTACTGTAGTTACATCTTTTTGGCCTTTCGGGATTACTGTATTTTTAGAAACCGTACAATGATAGTATCCAAAGCATCAAAATAAGA</canonical_amplicon>
		<polymorphic_amplicon>TGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGAATGATTTTATCAGCAAAAGTTGCCAATTTTAWAAATTCTTTTAAAAAATTTGAAACAGTAATTTTTTTTTGGAATTTTCGGAAAACAAAACACTTTTTTGGATTACTGTAGTTACATCTTTTTGGCCTTTCGGGATTACTGTATTTTTAGAAACCGTACAATGATAGTATCCAAAGCATCAAAATAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7600</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>39544</contig_pos>
        <strand>+</strand>
        <context>GCGYATCAMA[A/G]TTTTAACAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCGCATCACA</left_flank>
        <right_flank>TTTTAACAGTTTCCAAAAAATATCAAAAATATTTGAAACGGTATTTTTTT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAAATTCTAACAGTTTCCAAAAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTCAGATATTTTTCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGAATGATTTTATCAGCAAAAGTTGCCAATTTTAAAAATTCTTTTAAAAAATTTGAAACAGTAATTTTTTTTTGGAATTTTCGGAAAACAAAACACTTTTTTGGATTACTGTAGTTACATCTTTTTGGCCTTTCGGGATTACTGTATTTTTAGAAACCGTACAATGATAGTATCCAAAGCATCAAAATAAGAACCTCTCTAAAATTTTCGAAAATTTAGAAATTTTTAACAGTAATTTTTTCCTTTTTTTTCGAAATTTTCAAAATACTACTGTAGTTTGGGAATTGCTGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCGCATCACAGTTTTAACAGTTTCCAAAAAATATCAAAAATATTTGAAACGGTATTTTTTTAAACACAAATTCAGATTTTTTTTCGGATTACTGTAGTTTGGATCGTACTGTATTCATTTTTCTGGTCGGTATTTTTTGGTAATGTATCAGAAACGCGTCTGTTAGAATGTAGGTACCAGATTTTATCAGCAAACGTTGCCAATTTTAGAAATTCTCCCAATAAAAATTTGAAAAAGTAAATTTATTTAGATTTTCGGAGAAAACCTATTTTCGGATTACTGTAGTTCTTTTTTGGCTTTTTGGGATTATAGCGCTTGGAAGATCAAATATGAACTTTTTTTTCCGAAAATCGGAAAATTTTGAAAGAGTAAAATTTTTGAAATTTTTCGAAAATTTTAAACAACTACTGTAGTTATTGGAATTATTTTAATTTTGACTGAAGGGAGCAGCAAAGAAAAACTGTTCAACTTTTCGAAAATTTTTGAAACAGTAATTTTTGAAAATTTCGGA</canonical>
            <polymorphic>TCAAAATTCTAACAGTTTCCAAAAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTCAGATATTTTTCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGAATGATTTTATCAGCAAAAGTTGCCAATTTTAAAAATTCTTTTAAAAAATTTGAAACAGTAATTTTTTTTTGGAATTTTCGGAAAACAAAACACTTTTTTGGATTACTGTAGTTACATCTTTTTGGCCTTTCGGGATTACTGTATTTTTAGAAACCGTACAATGATAGTATCCAAAGCATCAAAATAAGAACCTCTCTAAAATTTTCGAAAATTTAGAAATTTTTAACAGTAATTTTTTCCTTTTTTTTCGAAATTTTCAAAATACTACTGTAGTTTGGGAATTGCTGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCGCATCACARTTTTAACAGTTTCCAAAAAATATCAAAAATATTTGAAACGGTATTTTTTTAAACACAAATTCAGATTTTTTTTCGGATTACTGTAGTTTGGATCGTACTGTATTCATTTTTCTGGTCGGTATTTTTTGGTAATGTATCAGAAACGCGTCTGTTAGAATGTAGGTACCAGATTTTATCAGCAAACGTTGCCAATTTTAGAAATTCTCCCAATAAAAATTTGAAAAAGTAAATTTATTTAGATTTTCGGAGAAAACCTATTTTCGGATTACTGTAGTTCTTTTTTGGCTTTTTGGGATTATAGCGCTTGGAAGATCAAATATGAACTTTTTTTTCCGAAAATCGGAAAATTTTGAAAGAGTAAAATTTTTGAAATTTTTCGAAAATTTTAAACAACTACTGTAGTTATTGGAATTATTTTAATTTTGACTGAAGGGAGCAGCAAAGAAAAACTGTTCAACTTTTCGAAAATTTTTGAAACAGTAATTTTTGAAAATTTCGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>171 128 80 73 66 53 50 42 41 41 37 33 32 32 28 21 17 17 15 14 9</canonical_bands>
                <polymorphic_bands>171 128 80 75 73 53 50 42 41 41 37 33 32 32 28 21 17 17 15 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCATCAAAATAAGAACCTCTCTA</pcr_primer_p1>
		<pcr_primer_p2>CCAAACTACAGTAATCCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCATCAAAATAAGAACCTCTCTAAAATTTTCGAAAATTTAGAAATTTTTAACAGTAATTTTTTCCTTTTTTTTCGAAATTTTCAAAATACTACTGTAGTTTGGGAATTGCTGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCGCATCACAGTTTTAACAGTTTCCAAAAAATATCAAAAATATTTGAAACGGTATTTTTTTAAACACAAATTCAGATTTTTTTTCGGATTACTGTAGTTTGG</canonical_amplicon>
		<polymorphic_amplicon>GCATCAAAATAAGAACCTCTCTAAAATTTTCGAAAATTTAGAAATTTTTAACAGTAATTTTTTCCTTTTTTTTCGAAATTTTCAAAATACTACTGTAGTTTGGGAATTGCTGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCGCATCACARTTTTAACAGTTTCCAAAAAATATCAAAAATATTTGAAACGGTATTTTTTTAAACACAAATTCAGATTTTTTTTCGGATTACTGTAGTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7601</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>41091</contig_pos>
        <strand>+</strand>
        <context>TGAMTACGGT[A/T]GTAAGAAAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGT</left_flank>
        <right_flank>GTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATTTTTTGAAAAATTCTCTTTAAAAATTTTTCTGGATTACTGTAGTCTGGAGCACACTGTAATTTTTGTTTTCAGATTACTGTATTTTTCGACAACCAACCAAACTTTAAAGCAGCTACATTTCCTAAAAGTTTGATTTCCGAAAATTTTGAAACAGTAACTTTTTTTTAATTTTGGAAAAAAATATATCTTTTTGTATTACTGTAGTTTGGGGATTACTGTTTTTTTCGATTACGGTAGTTAAGAAAGTGTCTATCTGTGTGTCTGTTTGCAGTAGTTTTTCAAAATTTTCAAAAAAAGATGGATTTTTTTTTTTGGCTTACTGTAGTTTTGAGACAACTGTAATTACTTTTTCTTGGCTTTTCTTGGGATTACTGTATTTTCGGTACCGCCCACGGATAACGACGAAAGCATCACAATCTGAACA</canonical>
            <polymorphic>CTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTWGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATTTTTTGAAAAATTCTCTTTAAAAATTTTTCTGGATTACTGTAGTCTGGAGCACACTGTAATTTTTGTTTTCAGATTACTGTATTTTTCGACAACCAACCAAACTTTAAAGCAGCTACATTTCCTAAAAGTTTGATTTCCGAAAATTTTGAAACAGTAACTTTTTTTTAATTTTGGAAAAAAATATATCTTTTTGTATTACTGTAGTTTGGGGATTACTGTTTTTTTCGATTACGGTAGTTAAGAAAGTGTCTATCTGTGTGTCTGTTTGCAGTAGTTTTTCAAAATTTTCAAAAAAAGATGGATTTTTTTTTTTGGCTTACTGTAGTTTTGAGACAACTGTAATTACTTTTTCTTGGCTTTTCTTGGGATTACTGTATTTTCGGTACCGCCCACGGATAACGACGAAAGCATCACAATCTGAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGAAAAATTTTGAAACAGTAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAAACAAAAATTACAGTGTGCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATTTTTTGAAAAATTCTCTTTAAAAATTTTTCTGGATTACTGTAGTCTGGAGCACACTGTAATTTTTGTTTTC</canonical_amplicon>
		<polymorphic_amplicon>TCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTWGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATTTTTTGAAAAATTCTCTTTAAAAATTTTTCTGGATTACTGTAGTCTGGAGCACACTGTAATTTTTGTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7602</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>41084</contig_pos>
        <strand>+</strand>
        <context>GTAATTATGA[A/C]TACGGTWGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGA</left_flank>
        <right_flank>TACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATTTTTTGAAAAATTCTCTTTAAAAATTTTTCTGGATTACTGTAGTCTGGAGCACACTGTAATTTTTGTTTTCAGATTACTGTATTTTTCGACAACCAACCAAACTTTAAAGCAGCTACATTTCCTAAAAGTTTGATTTCCGAAAATTTTGAAACAGTAACTTTTTTTTAATTTTGGAAAAAAATATATCTTTTTGTATTACTGTAGTTTGGGGATTACTGTTTTTTTCGATTACGGTAGTTAAGAAAGTGTCTATCTGTGTGTCTGTTTGCAGTAGTTTTTCAAAATTTTCAAAAAAAGATGGATTTTTTTTTTTGGCTTACTGTAGTTTTGAGACAACTGTAATTACTTTTTCTTGGCTTTTCTTGGGATTACTGTATTTTCGGTACCGCCCACGGATAACGACGAAAGCATCACAAT</canonical>
            <polymorphic>TGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAMTACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATTTTTTGAAAAATTCTCTTTAAAAATTTTTCTGGATTACTGTAGTCTGGAGCACACTGTAATTTTTGTTTTCAGATTACTGTATTTTTCGACAACCAACCAAACTTTAAAGCAGCTACATTTCCTAAAAGTTTGATTTCCGAAAATTTTGAAACAGTAACTTTTTTTTAATTTTGGAAAAAAATATATCTTTTTGTATTACTGTAGTTTGGGGATTACTGTTTTTTTCGATTACGGTAGTTAAGAAAGTGTCTATCTGTGTGTCTGTTTGCAGTAGTTTTTCAAAATTTTCAAAAAAAGATGGATTTTTTTTTTTGGCTTACTGTAGTTTTGAGACAACTGTAATTACTTTTTCTTGGCTTTTCTTGGGATTACTGTATTTTCGGTACCGCCCACGGATAACGACGAAAGCATCACAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGAAAAATTTTGAAACAGTAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAAACAAAAATTACAGTGTGCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATTTTTTGAAAAATTCTCTTTAAAAATTTTTCTGGATTACTGTAGTCTGGAGCACACTGTAATTTTTGTTTTC</canonical_amplicon>
		<polymorphic_amplicon>TCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAMTACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATTTTTTGAAAAATTCTCTTTAAAAATTTTTCTGGATTACTGTAGTCTGGAGCACACTGTAATTTTTGTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7603</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>41040</contig_pos>
        <strand></strand>
        <context>AAAAACCAAA[A/C]ACTTCTTCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAA</left_flank>
        <right_flank>ACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAAAAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATTTTTTGAAAAATTCTCTTTAAAAATTTTTCTGGATTACTGTAGTCTGGAGCACACTGTAATTTTTGTTTTCAGATTACTGTATTTTTCGACAACCAACCAAACTTTAAAGCAGCTACATTTCCTAAAAGTTTGATTTCCGAAAATTTTGAAACAGTAACTTTTTTTTAATTTTGGAAAAAAATATATCTTTTTGTATTACTGTAGTTTGGGGATTACTGTTTTTTTCGATTACGGTAGTTAAGAAAGTGTCTATCTGTGTGTCTGTTTGCAGTAGTTTTTCAAAATTTTCAAAAAAAGATGGATTTTTTTTTTTGGCTTACTGTAGTTTTGAGACAACTGTAATTACTTTTTCTTGGCTTTTCTTGGGATTACT</canonical>
            <polymorphic>TGGAAAAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAMACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATTTTTTGAAAAATTCTCTTTAAAAATTTTTCTGGATTACTGTAGTCTGGAGCACACTGTAATTTTTGTTTTCAGATTACTGTATTTTTCGACAACCAACCAAACTTTAAAGCAGCTACATTTCCTAAAAGTTTGATTTCCGAAAATTTTGAAACAGTAACTTTTTTTTAATTTTGGAAAAAAATATATCTTTTTGTATTACTGTAGTTTGGGGATTACTGTTTTTTTCGATTACGGTAGTTAAGAAAGTGTCTATCTGTGTGTCTGTTTGCAGTAGTTTTTCAAAATTTTCAAAAAAAGATGGATTTTTTTTTTTGGCTTACTGTAGTTTTGAGACAACTGTAATTACTTTTTCTTGGCTTTTCTTGGGATTACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGAAAAATTTTGAAACAGTAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAAACAAAAATTACAGTGTGCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATTTTTTGAAAAATTCTCTTTAAAAATTTTTCTGGATTACTGTAGTCTGGAGCACACTGTAATTTTTGTTTTC</canonical_amplicon>
		<polymorphic_amplicon>TCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAMACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATTTTTTGAAAAATTCTCTTTAAAAATTTTTCTGGATTACTGTAGTCTGGAGCACACTGTAATTTTTGTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7604</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>41019</contig_pos>
        <strand></strand>
        <context>AAMTTTTTTT[A/T]AAATTWCGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTT</left_flank>
        <right_flank>AAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTATTAGCATTTTTCAATTTTGGAAAAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATTTTTTGAAAAATTCTCTTTAAAAATTTTTCTGGATTACTGTAGTCTGGAGCACACTGTAATTTTTGTTTTCAGATTACTGTATTTTTCGACAACCAACCAAACTTTAAAGCAGCTACATTTCCTAAAAGTTTGATTTCCGAAAATTTTGAAACAGTAACTTTTTTTTAATTTTGGAAAAAAATATATCTTTTTGTATTACTGTAGTTTGGGGATTACTGTTTTTTTCGATTACGGTAGTTAAGAAAGTGTCTATCTGTGTGTCTGTTTGCAGTAGTTTTTCAAAATTTTCAAAAAAAGATGGATTTTTTTTTTTGGCTTACTGTAGTTTTGAGACAACTGTAATTACTTTTTC</canonical>
            <polymorphic>TTTATTAGCATTTTTCAATTTTGGAAAAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTWAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATTTTTTGAAAAATTCTCTTTAAAAATTTTTCTGGATTACTGTAGTCTGGAGCACACTGTAATTTTTGTTTTCAGATTACTGTATTTTTCGACAACCAACCAAACTTTAAAGCAGCTACATTTCCTAAAAGTTTGATTTCCGAAAATTTTGAAACAGTAACTTTTTTTTAATTTTGGAAAAAAATATATCTTTTTGTATTACTGTAGTTTGGGGATTACTGTTTTTTTCGATTACGGTAGTTAAGAAAGTGTCTATCTGTGTGTCTGTTTGCAGTAGTTTTTCAAAATTTTCAAAAAAAGATGGATTTTTTTTTTTGGCTTACTGTAGTTTTGAGACAACTGTAATTACTTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>333 247 167 166 87</canonical_bands>
                <polymorphic_bands>500 247 166 87</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>167 165 144 140 114 87 73 61 49</canonical_bands>
                <polymorphic_bands>216 165 144 140 114 87 73 61</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAATCATTCTTTTTCTCGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGATTATTCGATATGACACTTTC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAA</canonical_amplicon>
		<polymorphic_amplicon>GTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTWAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7605</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>40939</contig_pos>
        <strand>+</strand>
        <context>ATAAAAAGGT[C/T]TTCAAGTATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGT</left_flank>
        <right_flank>TTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAATTACTGTAGTTTTGACTACGGTAGTTCAAAATAGTCTAAAATATCAACTTCTGATACTTATCGATCTATCAAGAATTTATTAGCATTTTTCAATTTTGGAAAAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATTTTTTGAAAAATTCTCTTTAAAAATTTTTCTGGATTACTGTAGTCTGGAGCACACTGTAATTTTTGTTTTCAGATTACTGTATTTTTCGACAACCAACCAAACTTTAAAGCAGCTACATTTCCTAAAAGTTTGATTTCCGAAAATTTTGAAACAGTAACTTTTTTTTAATTTTGGAAAAAAATATATCTTTTTGTATTACTGTAGTTTGGGGATTACTGTTTTTTTCGATTACGGTAGTTAAGAAAGTGTCTATCTGTGTGTCTGTTTGCAGT</canonical>
            <polymorphic>TTGAATTACTGTAGTTTTGACTACGGTAGTTCAAAATAGTCTAAAATATCAACTTCTGATACTTATCGATCTATCAAGAATTTATTAGCATTTTTCAATTTTGGAAAAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTYTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATTTTTTGAAAAATTCTCTTTAAAAATTTTTCTGGATTACTGTAGTCTGGAGCACACTGTAATTTTTGTTTTCAGATTACTGTATTTTTCGACAACCAACCAAACTTTAAAGCAGCTACATTTCCTAAAAGTTTGATTTCCGAAAATTTTGAAACAGTAACTTTTTTTTAATTTTGGAAAAAAATATATCTTTTTGTATTACTGTAGTTTGGGGATTACTGTTTTTTTCGATTACGGTAGTTAAGAAAGTGTCTATCTGTGTGTCTGTTTGCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAATCATTCTTTTTCTCGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGATTATTCGATATGACACTTTC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAA</canonical_amplicon>
		<polymorphic_amplicon>GTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTYTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7606</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>40914</contig_pos>
        <strand>+</strand>
        <context>TATTACTGTW[C/T]TGTTTGATAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTA</left_flank>
        <right_flank>TGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGAAAAAAACTTATAAAAAATTTCTTGAATTACTGTAGTTTTGACTACGGTAGTTCAAAATAGTCTAAAATATCAACTTCTGATACTTATCGATCTATCAAGAATTTATTAGCATTTTTCAATTTTGGAAAAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATTTTTTGAAAAATTCTCTTTAAAAATTTTTCTGGATTACTGTAGTCTGGAGCACACTGTAATTTTTGTTTTCAGATTACTGTATTTTTCGACAACCAACCAAACTTTAAAGCAGCTACATTTCCTAAAAGTTTGATTTCCGAAAATTTTGAAACAGTAACTTTTTTTTAATTTTGGAAAAAAATATATCTTTTTGTATTACTGTAGTTTGGGGATTACTGTTTTTTTCGATTACGGTAGTTAAGAAAGT</canonical>
            <polymorphic>GGGAAAAAAACTTATAAAAAATTTCTTGAATTACTGTAGTTTTGACTACGGTAGTTCAAAATAGTCTAAAATATCAACTTCTGATACTTATCGATCTATCAAGAATTTATTAGCATTTTTCAATTTTGGAAAAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTAYTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATTTTTTGAAAAATTCTCTTTAAAAATTTTTCTGGATTACTGTAGTCTGGAGCACACTGTAATTTTTGTTTTCAGATTACTGTATTTTTCGACAACCAACCAAACTTTAAAGCAGCTACATTTCCTAAAAGTTTGATTTCCGAAAATTTTGAAACAGTAACTTTTTTTTAATTTTGGAAAAAAATATATCTTTTTGTATTACTGTAGTTTGGGGATTACTGTTTTTTTCGATTACGGTAGTTAAGAAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>132 93 90 83 75 73 68 47 44 36 35 33 23 20 17 17 17 17 16 15 15 15 14 5</canonical_bands>
                <polymorphic_bands>132 95 93 83 75 73 68 47 44 36 35 33 23 20 17 17 17 17 16 15 15 15 14</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATCAATTTCTGATACTTATTGAG</pcr_primer_p1>
		<pcr_primer_p2>TCAATATTTTAATTTTTGTTGATCC</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>AAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGA</canonical_amplicon>
		<polymorphic_amplicon>AAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTAYTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7607</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>40913</contig_pos>
        <strand>+</strand>
        <context>ATATTACTGT[A/T]YTGTTTGATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGT</left_flank>
        <right_flank>CTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGGAAAAAAACTTATAAAAAATTTCTTGAATTACTGTAGTTTTGACTACGGTAGTTCAAAATAGTCTAAAATATCAACTTCTGATACTTATCGATCTATCAAGAATTTATTAGCATTTTTCAATTTTGGAAAAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATTTTTTGAAAAATTCTCTTTAAAAATTTTTCTGGATTACTGTAGTCTGGAGCACACTGTAATTTTTGTTTTCAGATTACTGTATTTTTCGACAACCAACCAAACTTTAAAGCAGCTACATTTCCTAAAAGTTTGATTTCCGAAAATTTTGAAACAGTAACTTTTTTTTAATTTTGGAAAAAAATATATCTTTTTGTATTACTGTAGTTTGGGGATTACTGTTTTTTTCGATTACGGTAGTTAAGAAAG</canonical>
            <polymorphic>CGGGAAAAAAACTTATAAAAAATTTCTTGAATTACTGTAGTTTTGACTACGGTAGTTCAAAATAGTCTAAAATATCAACTTCTGATACTTATCGATCTATCAAGAATTTATTAGCATTTTTCAATTTTGGAAAAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTWCTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATTTTTTGAAAAATTCTCTTTAAAAATTTTTCTGGATTACTGTAGTCTGGAGCACACTGTAATTTTTGTTTTCAGATTACTGTATTTTTCGACAACCAACCAAACTTTAAAGCAGCTACATTTCCTAAAAGTTTGATTTCCGAAAATTTTGAAACAGTAACTTTTTTTTAATTTTGGAAAAAAATATATCTTTTTGTATTACTGTAGTTTGGGGATTACTGTTTTTTTCGATTACGGTAGTTAAGAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>132 93 90 83 75 73 68 47 44 36 36 33 23 20 17 17 17 17 16 15 15 15 13 5</canonical_bands>
                <polymorphic_bands>132 95 93 83 75 73 68 47 44 36 36 33 23 20 17 17 17 17 16 15 15 15 13</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATCAATTTCTGATACTTATTGAG</pcr_primer_p1>
		<pcr_primer_p2>TCAATATTTTAATTTTTGTTGATCC</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>AAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGA</canonical_amplicon>
		<polymorphic_amplicon>AAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTWCTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7608</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>40745</contig_pos>
        <strand>+</strand>
        <context>CAAAATAGTC[A/C]AAAAAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTC</left_flank>
        <right_flank>AAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTGTGATTTGGACTACGGTAATCTGTGCGTCTCTTTTTAAATAAAAACAATATACGAACAATATTTTCAAAAACTTTGAAAAACTGTAATTTCTGAAAAAAAATTGTTCAAGTATTTAAAGATTACTGTAGTTTTTGGATTCATTGTTATTTTTCATTGTTAATTTCGGGAAAAAAACTTATAAAAAATTTCTTGAATTACTGTAGTTTTGACTACGGTAGTTCAAAATAGTCTAAAATATCAACTTCTGATACTTATCGATCTATCAAGAATTTATTAGCATTTTTCAATTTTGGAAAAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATTTTTTGAAAAATTCTCTTTAAAAATTTTTCTGGATTACTGTAGTCTGGAGCACACTGTAATTTTTGTTTTCAGATTACT</canonical>
            <polymorphic>CACTGTGATTTGGACTACGGTAATCTGTGCGTCTCTTTTTAAATAAAAACAATATACGAACAATATTTTCAAAAACTTTGAAAAACTGTAATTTCTGAAAAAAAATTGTTCAAGTATTTAAAGATTACTGTAGTTTTTGGATTCATTGTTATTTTTCATTGTTAATTTCGGGAAAAAAACTTATAAAAAATTTCTTGAATTACTGTAGTTTTGACTACGGTAGTTCAAAATAGTCTAAAATATCAACTTCTGATACTTATCGATCTATCAAGAATTTATTAGCATTTTTCAATTTTGGAAAAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCMAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATTTTTTGAAAAATTCTCTTTAAAAATTTTTCTGGATTACTGTAGTCTGGAGCACACTGTAATTTTTGTTTTCAGATTACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTTCTTTTATTTTGGGTTA</pcr_primer_p1>
		<pcr_primer_p2>CGAAAATTGAAAAATGCTAATAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCMAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7634</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>40668</contig_pos>
        <strand></strand>
        <context>CAAAAATCtr[T/A]atatttgaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTA</left_flank>
        <right_flank>ATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGAC</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAAACCATAAGCTTTGAAACAGTAATTTTAAAAAAATTTTGAAAATTTCAAAAAATTACTGTAGTTTGGGGATCACTGTGATTTGGACTACGGTAATCTGTGCGTCTCTTTTTAAATAAAAACAATATACGAACAATATTTTCAAAAACTTTGAAAAACTGTAATTTCTGAAAAAAAATTGTTCAAGTATTTAAAGATTACTGTAGTTTTTGGATTCATTGTTATTTTTCATTGTTAATTTCGGGAAAAAAACTTATAAAAAATTTCTTGAATTACTGTAGTTTTGACTACGGTAGTTCAAAATAGTCTAAAATATCAACTTCTGATACTTATCGATCTATCAAGAATTTATTAGCATTTTTCAATTTTGGAAAAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATTT</canonical>
            <polymorphic>AAAAAAAACCATAAGCTTTGAAACAGTAATTTTAAAAAAATTTTGAAAATTTCAAAAAATTACTGTAGTTTGGGGATCACTGTGATTTGGACTACGGTAATCTGTGCGTCTCTTTTTAAATAAAAACAATATACGAACAATATTTTCAAAAACTTTGAAAAACTGTAATTTCTGAAAAAAAATTGTTCAAGTATTTAAAGATTACTGTAGTTTTTGGATTCATTGTTATTTTTCATTGTTAATTTCGGGAAAAAAACTTATAAAAAATTTCTTGAATTACTGTAGTTTTGACTACGGTAGTTCAAAATAGTCTAAAATATCAACTTCTGATACTTATCGATCTATCAAGAATTTATTAGCATTTTTCAATTTTGGAAAAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTAWATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTTCTTTTATTTTGGGTTA</pcr_primer_p1>
		<pcr_primer_p2>CGAAAATTGAAAAATGCTAATAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTAWATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7635</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>40667</contig_pos>
        <strand></strand>
        <context>GCAAAAATCt[A/G]watatttgaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCT</left_flank>
        <right_flank>TATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAAAACCATAAGCTTTGAAACAGTAATTTTAAAAAAATTTTGAAAATTTCAAAAAATTACTGTAGTTTGGGGATCACTGTGATTTGGACTACGGTAATCTGTGCGTCTCTTTTTAAATAAAAACAATATACGAACAATATTTTCAAAAACTTTGAAAAACTGTAATTTCTGAAAAAAAATTGTTCAAGTATTTAAAGATTACTGTAGTTTTTGGATTCATTGTTATTTTTCATTGTTAATTTCGGGAAAAAAACTTATAAAAAATTTCTTGAATTACTGTAGTTTTGACTACGGTAGTTCAAAATAGTCTAAAATATCAACTTCTGATACTTATCGATCTATCAAGAATTTATTAGCATTTTTCAATTTTGGAAAAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATT</canonical>
            <polymorphic>AAAAAAAAACCATAAGCTTTGAAACAGTAATTTTAAAAAAATTTTGAAAATTTCAAAAAATTACTGTAGTTTGGGGATCACTGTGATTTGGACTACGGTAATCTGTGCGTCTCTTTTTAAATAAAAACAATATACGAACAATATTTTCAAAAACTTTGAAAAACTGTAATTTCTGAAAAAAAATTGTTCAAGTATTTAAAGATTACTGTAGTTTTTGGATTCATTGTTATTTTTCATTGTTAATTTCGGGAAAAAAACTTATAAAAAATTTCTTGAATTACTGTAGTTTTGACTACGGTAGTTCAAAATAGTCTAAAATATCAACTTCTGATACTTATCGATCTATCAAGAATTTATTAGCATTTTTCAATTTTGGAAAAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTRTATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTTCTTTTATTTTGGGTTA</pcr_primer_p1>
		<pcr_primer_p2>CGAAAATTGAAAAATGCTAATAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTRTATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7637</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>40631</contig_pos>
        <strand>+</strand>
        <context>WAGATACTTT[A/T]TTGAGTCTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTT</left_flank>
        <right_flank>TTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTAACGGCCGCGACATCAAAACATACACTTTTCCAAAAAAAAAACCATAAGCTTTGAAACAGTAATTTTAAAAAAATTTTGAAAATTTCAAAAAATTACTGTAGTTTGGGGATCACTGTGATTTGGACTACGGTAATCTGTGCGTCTCTTTTTAAATAAAAACAATATACGAACAATATTTTCAAAAACTTTGAAAAACTGTAATTTCTGAAAAAAAATTGTTCAAGTATTTAAAGATTACTGTAGTTTTTGGATTCATTGTTATTTTTCATTGTTAATTTCGGGAAAAAAACTTATAAAAAATTTCTTGAATTACTGTAGTTTTGACTACGGTAGTTCAAAATAGTCTAAAATATCAACTTCTGATACTTATCGATCTATCAAGAATTTATTAGCATTTTTCAATTTTGGAAAAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGC</canonical>
            <polymorphic>GTTAACGGCCGCGACATCAAAACATACACTTTTCCAAAAAAAAAACCATAAGCTTTGAAACAGTAATTTTAAAAAAATTTTGAAAATTTCAAAAAATTACTGTAGTTTGGGGATCACTGTGATTTGGACTACGGTAATCTGTGCGTCTCTTTTTAAATAAAAACAATATACGAACAATATTTTCAAAAACTTTGAAAAACTGTAATTTCTGAAAAAAAATTGTTCAAGTATTTAAAGATTACTGTAGTTTTTGGATTCATTGTTATTTTTCATTGTTAATTTCGGGAAAAAAACTTATAAAAAATTTCTTGAATTACTGTAGTTTTGACTACGGTAGTTCAAAATAGTCTAAAATATCAACTTCTGATACTTATCGATCTATCAAGAATTTATTAGCATTTTTCAATTTTGGAAAAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTWTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTTCTTTTATTTTGGGTTA</pcr_primer_p1>
		<pcr_primer_p2>CGAAAATTGAAAAATGCTAATAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTWTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7638</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>40621</contig_pos>
        <strand>+</strand>
        <context>ACTGTATTTT[A/T]AGATACTTTW</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTT</left_flank>
        <right_flank>AGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTGAGAAGTTAACGGCCGCGACATCAAAACATACACTTTTCCAAAAAAAAAACCATAAGCTTTGAAACAGTAATTTTAAAAAAATTTTGAAAATTTCAAAAAATTACTGTAGTTTGGGGATCACTGTGATTTGGACTACGGTAATCTGTGCGTCTCTTTTTAAATAAAAACAATATACGAACAATATTTTCAAAAACTTTGAAAAACTGTAATTTCTGAAAAAAAATTGTTCAAGTATTTAAAGATTACTGTAGTTTTTGGATTCATTGTTATTTTTCATTGTTAATTTCGGGAAAAAAACTTATAAAAAATTTCTTGAATTACTGTAGTTTTGACTACGGTAGTTCAAAATAGTCTAAAATATCAACTTCTGATACTTATCGATCTATCAAGAATTTATTAGCATTTTTCAATTTTGGAAAAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATA</canonical>
            <polymorphic>TTGTTGAGAAGTTAACGGCCGCGACATCAAAACATACACTTTTCCAAAAAAAAAACCATAAGCTTTGAAACAGTAATTTTAAAAAAATTTTGAAAATTTCAAAAAATTACTGTAGTTTGGGGATCACTGTGATTTGGACTACGGTAATCTGTGCGTCTCTTTTTAAATAAAAACAATATACGAACAATATTTTCAAAAACTTTGAAAAACTGTAATTTCTGAAAAAAAATTGTTCAAGTATTTAAAGATTACTGTAGTTTTTGGATTCATTGTTATTTTTCATTGTTAATTTCGGGAAAAAAACTTATAAAAAATTTCTTGAATTACTGTAGTTTTGACTACGGTAGTTCAAAATAGTCTAAAATATCAACTTCTGATACTTATCGATCTATCAAGAATTTATTAGCATTTTTCAATTTTGGAAAAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTWAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTTCTTTTATTTTGGGTTA</pcr_primer_p1>
		<pcr_primer_p2>CGAAAATTGAAAAATGCTAATAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTWAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7639</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>40545</contig_pos>
        <strand></strand>
        <context>CAATTTTGGA[A/G]AAATTTGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGATACTTATCGATCTATCAAGAATTTATTAGCATTTTTCAATTTTGGA</left_flank>
        <right_flank>AAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACATGTTTTTCTGGATTACTGTAGTTAGGAAACTACTGTAAATATATTTTTGGTTTCCTTGAGATTACTGTATTTGTTGAGAAGTTAACGGCCGCGACATCAAAACATACACTTTTCCAAAAAAAAAACCATAAGCTTTGAAACAGTAATTTTAAAAAAATTTTGAAAATTTCAAAAAATTACTGTAGTTTGGGGATCACTGTGATTTGGACTACGGTAATCTGTGCGTCTCTTTTTAAATAAAAACAATATACGAACAATATTTTCAAAAACTTTGAAAAACTGTAATTTCTGAAAAAAAATTGTTCAAGTATTTAAAGATTACTGTAGTTTTTGGATTCATTGTTATTTTTCATTGTTAATTTCGGGAAAAAAACTTATAAAAAATTTCTTGAATTACTGTAGTTTTGACTACGGTAGTTCAAAATAGTCTAAAATATCAACTTCTGATACTTATCGATCTATCAAGAATTTATTAGCATTTTTCAATTTTGGAAAAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTC</canonical>
            <polymorphic>AAAACATGTTTTTCTGGATTACTGTAGTTAGGAAACTACTGTAAATATATTTTTGGTTTCCTTGAGATTACTGTATTTGTTGAGAAGTTAACGGCCGCGACATCAAAACATACACTTTTCCAAAAAAAAAACCATAAGCTTTGAAACAGTAATTTTAAAAAAATTTTGAAAATTTCAAAAAATTACTGTAGTTTGGGGATCACTGTGATTTGGACTACGGTAATCTGTGCGTCTCTTTTTAAATAAAAACAATATACGAACAATATTTTCAAAAACTTTGAAAAACTGTAATTTCTGAAAAAAAATTGTTCAAGTATTTAAAGATTACTGTAGTTTTTGGATTCATTGTTATTTTTCATTGTTAATTTCGGGAAAAAAACTTATAAAAAATTTCTTGAATTACTGTAGTTTTGACTACGGTAGTTCAAAATAGTCTAAAATATCAACTTCTGATACTTATCGATCTATCAAGAATTTATTAGCATTTTTCAATTTTGGARAAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGATTCATTGTTATTTTTCATT</pcr_primer_p1>
		<pcr_primer_p2>TCAAAAACTACAGTAACCCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>222</pcr_amplicon_size>
		<canonical_amplicon>TGGATTCATTGTTATTTTTCATTGTTAATTTCGGGAAAAAAACTTATAAAAAATTTCTTGAATTACTGTAGTTTTGACTACGGTAGTTCAAAATAGTCTAAAATATCAACTTCTGATACTTATCGATCTATCAAGAATTTATTAGCATTTTTCAATTTTGGAAAAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGA</canonical_amplicon>
		<polymorphic_amplicon>TGGATTCATTGTTATTTTTCATTGTTAATTTCGGGAAAAAAACTTATAAAAAATTTCTTGAATTACTGTAGTTTTGACTACGGTAGTTCAAAATAGTCTAAAATATCAACTTCTGATACTTATCGATCTATCAAGAATTTATTAGCATTTTTCAATTTTGGARAAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7640</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>87623</contig_pos>
        <strand></strand>
        <context>CCCGTCCAAA[A/C]AMCAATTAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAA</left_flank>
        <right_flank>ACCAATTAAGCATATTAGTCCTCAAAGTGATCGAATCGGCATTACGGGCA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAGATGAGAAACTTGGTTTTTCGTGTTATTTTGTGCTAATATTGACTAGAATTTCTAAATTTGAATAGAATATTCTATTAAACCAAAGTTGGGGGACTAGAATCCCGAACACAAAAATCAACAATGAGTAATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAACCAATTAAGCATATTAGTCCTCAAAGTGATCGAATCGGCATTACGGGCATTTCTATCGAATTCTCGAAAATTGATTTGTGGCTTGTTCTGGACGAAGGAAGTATTCGTTGGGAAAGGGCATTCAATATTACCTGAGTTTCTGGCAACTTGGTGTAATTGCTGAAGATAGAACGGCGTAACTTGGATCCTCTCTTCTCGAAACACTCCTTGATGTACATGGTCATGAACAAGACAACATCATCTTTAGTGTCATGAAGCGAATCCAATGATTTTGCCTCTTTTGCAATTGCCTTCTTGATCCCAACACAGAGAATCCAATGGTTGATTAGGACAGCCGGCGAATCCTTGGAACTCCACAGTTGGCATCCTTCCATCCATTGAGCCGGATTGCAATTGATTTGGACATGGGCAGACGATGAGCTTGTGTTGAGGTTGGGAAGAAACATGGCGGTTGGAATGGGTTGTTCTTCTTGTTGATTCTCGCTTTTTGATCCTTCGT</canonical>
            <polymorphic>CTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAGATGAGAAACTTGGTTTTTCGTGTTATTTTGTGCTAATATTGACTAGAATTTCTAAATTTGAATAGAATATTCTATTAAACCAAAGTTGGGGGACTAGAATCCCGAACACAAAAATCAACAATGAGTAATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAMACCAATTAAGCATATTAGTCCTCAAAGTGATCGAATCGGCATTACGGGCATTTCTATCGAATTCTCGAAAATTGATTTGTGGCTTGTTCTGGACGAAGGAAGTATTCGTTGGGAAAGGGCATTCAATATTACCTGAGTTTCTGGCAACTTGGTGTAATTGCTGAAGATAGAACGGCGTAACTTGGATCCTCTCTTCTCGAAACACTCCTTGATGTACATGGTCATGAACAAGACAACATCATCTTTAGTGTCATGAAGCGAATCCAATGATTTTGCCTCTTTTGCAATTGCCTTCTTGATCCCAACACAGAGAATCCAATGGTTGATTAGGACAGCCGGCGAATCCTTGGAACTCCACAGTTGGCATCCTTCCATCCATTGAGCCGGATTGCAATTGATTTGGACATGGGCAGACGATGAGCTTGTGTTGAGGTTGGGAAGAAACATGGCGGTTGGAATGGGTTGTTCTTCTTGTTGATTCTCGCTTTTTGATCCTTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAACAATCATTTATTTTCTTTG</pcr_primer_p1>
		<pcr_primer_p2>CCAGAAACTCAGGTAATATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAACCAATTAAGCATATTAGTCCTCAAAGTGATCGAATCGGCATTACGGGCATTTCTATCGAATTCTCGAAAATTGATTTGTGGCTTGTTCTGGACGAAGGAAGTATTCGTTGGGAAAGGGCATTCAATATTACCTGAGTTTCTGG</canonical_amplicon>
		<polymorphic_amplicon>ATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAMACCAATTAAGCATATTAGTCCTCAAAGTGATCGAATCGGCATTACGGGCATTTCTATCGAATTCTCGAAAATTGATTTGTGGCTTGTTCTGGACGAAGGAAGTATTCGTTGGGAAAGGGCATTCAATATTACCTGAGTTTCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7650</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>46604</contig_pos>
        <strand>+</strand>
        <context>TGGTGTTAGA[A/G]ATAATTGAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGCTGATGGAATACGGTTACAACGACTGCAAACGTTAGTTGGTGTTAGA</left_flank>
        <right_flank>ATAATTGAACAATTAAAATAATTAAAATAAAACTAACTTTTTGTTCAGGG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAAAAGTTGGAACTAATTTTTTTACCCATCCGCGAAACTAACTCGTAACCATAAATTTCCTATTTGGCGAGTCAGCTAAGCTTGGAGTAAAAAGTTTCAGCAAAGCTTGGAGTAAAAATCTCTGTTGTCATTATAAATTATCAAAAACTTTTTTCTCTGTTTCTACTACAAGGGTATTAGTTATGTGATTTTTAGTTCTAATGCGTAATGCCATATCGTATCTTCGGGCAAACTTAAAGAAACCTCATCGAAATGGTTTAACCTACCAACTATCGTCGTCTTCAACTGCAACTCGAACGCCACTTCAGTATCTGCATGATTCGGTGCAGAAACTTTGAAAAGTGTTATAGCAGGACGATGAGAGGAGATGGGCACAGCACGAGCCAATGAGATAAACTGATAAGTGAGAAACAATGGAACTTTGGAACACTCTTCAGGCAAACCACATGCTGATGGAATACGGTTACAACGACTGCAAACGTTAGTTGGTGTTAGAGATAATTGAACAATTAAAATAATTAAAATAAAACTAACTTTTTGTTCAGGGAGTCATGTACGTAGTTGGTTGGACAGTCGATCGAATGACACTTGAATGATCCGAGGGTGTTCACACATACTTTATCCGTTCCAGCACATTCACCCATTGCACATTCATCCACATCTAAAAATAAATAATTAACCGATTGTAGGAGAACTCATTCTTTGGTAGTATTCTCGATTATTAGTTGGAAGAAATGAAATGAAGTATGTGAAACAAGAATTTTTCGCAAAAAAAGTTATCTAATAACTGCAAAAATTAGGGCCTAGCGGGTTAAGGGAAGCAAAGTGCATCCAATTTAAGGGGTTTTTTGTTAAAATATAAAATTTTTAAGTTTTTTGTAAAATCGTTTTTATGTGATTTTGGTTGGCGCCTTTTGCCTAATACCCAAAGAAATGATTTTTTTCGAAAAAGAAAAGTCAAACAACTAAGTTTCCCAGTTTCAAATGTTTCATTTTT</canonical>
            <polymorphic>TTTGAAAAGTTGGAACTAATTTTTTTACCCATCCGCGAAACTAACTCGTAACCATAAATTTCCTATTTGGCGAGTCAGCTAAGCTTGGAGTAAAAAGTTTCAGCAAAGCTTGGAGTAAAAATCTCTGTTGTCATTATAAATTATCAAAAACTTTTTTCTCTGTTTCTACTACAAGGGTATTAGTTATGTGATTTTTAGTTCTAATGCGTAATGCCATATCGTATCTTCGGGCAAACTTAAAGAAACCTCATCGAAATGGTTTAACCTACCAACTATCGTCGTCTTCAACTGCAACTCGAACGCCACTTCAGTATCTGCATGATTCGGTGCAGAAACTTTGAAAAGTGTTATAGCAGGACGATGAGAGGAGATGGGCACAGCACGAGCCAATGAGATAAACTGATAAGTGAGAAACAATGGAACTTTGGAACACTCTTCAGGCAAACCACATGCTGATGGAATACGGTTACAACGACTGCAAACGTTAGTTGGTGTTAGARATAATTGAACAATTAAAATAATTAAAATAAAACTAACTTTTTGTTCAGGGAGTCATGTACGTAGTTGGTTGGACAGTCGATCGAATGACACTTGAATGATCCGAGGGTGTTCACACATACTTTATCCGTTCCAGCACATTCACCCATTGCACATTCATCCACATCTAAAAATAAATAATTAACCGATTGTAGGAGAACTCATTCTTTGGTAGTATTCTCGATTATTAGTTGGAAGAAATGAAATGAAGTATGTGAAACAAGAATTTTTCGCAAAAAAAGTTATCTAATAACTGCAAAAATTAGGGCCTAGCGGGTTAAGGGAAGCAAAGTGCATCCAATTTAAGGGGTTTTTTGTTAAAATATAAAATTTTTAAGTTTTTTGTAAAATCGTTTTTATGTGATTTTGGTTGGCGCCTTTTGCCTAATACCCAAAGAAATGATTTTTTTCGAAAAAGAAAAGTCAAACAACTAAGTTTCCCAGTTTCAAATGTTTCATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCCAATGAGATAAACTGATAA</pcr_primer_p1>
		<pcr_primer_p2>GAACGGATAAAGTATGTGTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAGCCAATGAGATAAACTGATAAGTGAGAAACAATGGAACTTTGGAACACTCTTCAGGCAAACCACATGCTGATGGAATACGGTTACAACGACTGCAAACGTTAGTTGGTGTTAGAGATAATTGAACAATTAAAATAATTAAAATAAAACTAACTTTTTGTTCAGGGAGTCATGTACGTAGTTGGTTGGACAGTCGATCGAATGACACTTGAATGATCCGAGGGTGTTCACACATACTTTATCCGTTC</canonical_amplicon>
		<polymorphic_amplicon>GAGCCAATGAGATAAACTGATAAGTGAGAAACAATGGAACTTTGGAACACTCTTCAGGCAAACCACATGCTGATGGAATACGGTTACAACGACTGCAAACGTTAGTTGGTGTTAGARATAATTGAACAATTAAAATAATTAAAATAAAACTAACTTTTTGTTCAGGGAGTCATGTACGTAGTTGGTTGGACAGTCGATCGAATGACACTTGAATGATCCGAGGGTGTTCACACATACTTTATCCGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7660</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>46624</contig_pos>
        <strand></strand>
        <context>Caattaaaat[A/G]attaaaataa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAACGACTGCAAACGTTAGTTGGTGTTAGAGATAATTGAACAATTAAAAT</left_flank>
        <right_flank>ATTAAAATAAAACTAACTTTTTGTTCAGGGAGTCATGTACGTAGTTGGTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTACCCATCCGCGAAACTAACTCGTAACCATAAATTTCCTATTTGGCGAGTCAGCTAAGCTTGGAGTAAAAAGTTTCAGCAAAGCTTGGAGTAAAAATCTCTGTTGTCATTATAAATTATCAAAAACTTTTTTCTCTGTTTCTACTACAAGGGTATTAGTTATGTGATTTTTAGTTCTAATGCGTAATGCCATATCGTATCTTCGGGCAAACTTAAAGAAACCTCATCGAAATGGTTTAACCTACCAACTATCGTCGTCTTCAACTGCAACTCGAACGCCACTTCAGTATCTGCATGATTCGGTGCAGAAACTTTGAAAAGTGTTATAGCAGGACGATGAGAGGAGATGGGCACAGCACGAGCCAATGAGATAAACTGATAAGTGAGAAACAATGGAACTTTGGAACACTCTTCAGGCAAACCACATGCTGATGGAATACGGTTACAACGACTGCAAACGTTAGTTGGTGTTAGAGATAATTGAACAATTAAAATAATTAAAATAAAACTAACTTTTTGTTCAGGGAGTCATGTACGTAGTTGGTTGGACAGTCGATCGAATGACACTTGAATGATCCGAGGGTGTTCACACATACTTTATCCGTTCCAGCACATTCACCCATTGCACATTCATCCACATCTAAAAATAAATAATTAACCGATTGTAGGAGAACTCATTCTTTGGTAGTATTCTCGATTATTAGTTGGAAGAAATGAAATGAAGTATGTGAAACAAGAATTTTTCGCAAAAAAAGTTATCTAATAACTGCAAAAATTAGGGCCTAGCGGGTTAAGGGAAGCAAAGTGCATCCAATTTAAGGGGTTTTTTGTTAAAATATAAAATTTTTAAGTTTTTTGTAAAATCGTTTTTATGTGATTTTGGTTGGCGCCTTTTGCCTAATACCCAAAGAAATGATTTTTTTCGAAAAAGAAAAGTCAAACAACTAAGTTTCCCAGTTTCAAATGTTTCATTTTTTTCTAGAATGTTTGTCTTTC</canonical>
            <polymorphic>TTTTTTACCCATCCGCGAAACTAACTCGTAACCATAAATTTCCTATTTGGCGAGTCAGCTAAGCTTGGAGTAAAAAGTTTCAGCAAAGCTTGGAGTAAAAATCTCTGTTGTCATTATAAATTATCAAAAACTTTTTTCTCTGTTTCTACTACAAGGGTATTAGTTATGTGATTTTTAGTTCTAATGCGTAATGCCATATCGTATCTTCGGGCAAACTTAAAGAAACCTCATCGAAATGGTTTAACCTACCAACTATCGTCGTCTTCAACTGCAACTCGAACGCCACTTCAGTATCTGCATGATTCGGTGCAGAAACTTTGAAAAGTGTTATAGCAGGACGATGAGAGGAGATGGGCACAGCACGAGCCAATGAGATAAACTGATAAGTGAGAAACAATGGAACTTTGGAACACTCTTCAGGCAAACCACATGCTGATGGAATACGGTTACAACGACTGCAAACGTTAGTTGGTGTTAGAGATAATTGAACAATTAAAATRATTAAAATAAAACTAACTTTTTGTTCAGGGAGTCATGTACGTAGTTGGTTGGACAGTCGATCGAATGACACTTGAATGATCCGAGGGTGTTCACACATACTTTATCCGTTCCAGCACATTCACCCATTGCACATTCATCCACATCTAAAAATAAATAATTAACCGATTGTAGGAGAACTCATTCTTTGGTAGTATTCTCGATTATTAGTTGGAAGAAATGAAATGAAGTATGTGAAACAAGAATTTTTCGCAAAAAAAGTTATCTAATAACTGCAAAAATTAGGGCCTAGCGGGTTAAGGGAAGCAAAGTGCATCCAATTTAAGGGGTTTTTTGTTAAAATATAAAATTTTTAAGTTTTTTGTAAAATCGTTTTTATGTGATTTTGGTTGGCGCCTTTTGCCTAATACCCAAAGAAATGATTTTTTTCGAAAAAGAAAAGTCAAACAACTAAGTTTCCCAGTTTCAAATGTTTCATTTTTTTCTAGAATGTTTGTCTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>364 157 155 85 82 39 36 36 29 9 8</canonical_bands>
                <polymorphic_bands>364 166 155 85 82 39 36 36 29 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGCCAATGAGATAAACTGATAA</pcr_primer_p1>
		<pcr_primer_p2>GAACGGATAAAGTATGTGTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAGCCAATGAGATAAACTGATAAGTGAGAAACAATGGAACTTTGGAACACTCTTCAGGCAAACCACATGCTGATGGAATACGGTTACAACGACTGCAAACGTTAGTTGGTGTTAGAGATAATTGAACAATTAAAATAATTAAAATAAAACTAACTTTTTGTTCAGGGAGTCATGTACGTAGTTGGTTGGACAGTCGATCGAATGACACTTGAATGATCCGAGGGTGTTCACACATACTTTATCCGTTC</canonical_amplicon>
		<polymorphic_amplicon>GAGCCAATGAGATAAACTGATAAGTGAGAAACAATGGAACTTTGGAACACTCTTCAGGCAAACCACATGCTGATGGAATACGGTTACAACGACTGCAAACGTTAGTTGGTGTTAGAGATAATTGAACAATTAAAATRATTAAAATAAAACTAACTTTTTGTTCAGGGAGTCATGTACGTAGTTGGTTGGACAGTCGATCGAATGACACTTGAATGATCCGAGGGTGTTCACACATACTTTATCCGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7673</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>46664</contig_pos>
        <strand>+</strand>
        <context>GAGTCATGTA[C/T]GTAGTTGGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATTAAAATAATTAAAATAAAACTAACTTTTTGTTCAGGGAGTCATGTA</left_flank>
        <right_flank>GTAGTTGGTTGGACAGTCGATCGAATGACACTTGAATGATCCGAGGGTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTATTTGGCGAGTCAGCTAAGCTTGGAGTAAAAAGTTTCAGCAAAGCTTGGAGTAAAAATCTCTGTTGTCATTATAAATTATCAAAAACTTTTTTCTCTGTTTCTACTACAAGGGTATTAGTTATGTGATTTTTAGTTCTAATGCGTAATGCCATATCGTATCTTCGGGCAAACTTAAAGAAACCTCATCGAAATGGTTTAACCTACCAACTATCGTCGTCTTCAACTGCAACTCGAACGCCACTTCAGTATCTGCATGATTCGGTGCAGAAACTTTGAAAAGTGTTATAGCAGGACGATGAGAGGAGATGGGCACAGCACGAGCCAATGAGATAAACTGATAAGTGAGAAACAATGGAACTTTGGAACACTCTTCAGGCAAACCACATGCTGATGGAATACGGTTACAACGACTGCAAACGTTAGTTGGTGTTAGAGATAATTGAACAATTAAAATAATTAAAATAAAACTAACTTTTTGTTCAGGGAGTCATGTACGTAGTTGGTTGGACAGTCGATCGAATGACACTTGAATGATCCGAGGGTGTTCACACATACTTTATCCGTTCCAGCACATTCACCCATTGCACATTCATCCACATCTAAAAATAAATAATTAACCGATTGTAGGAGAACTCATTCTTTGGTAGTATTCTCGATTATTAGTTGGAAGAAATGAAATGAAGTATGTGAAACAAGAATTTTTCGCAAAAAAAGTTATCTAATAACTGCAAAAATTAGGGCCTAGCGGGTTAAGGGAAGCAAAGTGCATCCAATTTAAGGGGTTTTTTGTTAAAATATAAAATTTTTAAGTTTTTTGTAAAATCGTTTTTATGTGATTTTGGTTGGCGCCTTTTGCCTAATACCCAAAGAAATGATTTTTTTCGAAAAAGAAAAGTCAAACAACTAAGTTTCCCAGTTTCAAATGTTTCATTTTTTTCTAGAATGTTTGTCTTTCTATGAATTGGCGCACACTCACCGACACAAGTCCTTCCATC</canonical>
            <polymorphic>TCCTATTTGGCGAGTCAGCTAAGCTTGGAGTAAAAAGTTTCAGCAAAGCTTGGAGTAAAAATCTCTGTTGTCATTATAAATTATCAAAAACTTTTTTCTCTGTTTCTACTACAAGGGTATTAGTTATGTGATTTTTAGTTCTAATGCGTAATGCCATATCGTATCTTCGGGCAAACTTAAAGAAACCTCATCGAAATGGTTTAACCTACCAACTATCGTCGTCTTCAACTGCAACTCGAACGCCACTTCAGTATCTGCATGATTCGGTGCAGAAACTTTGAAAAGTGTTATAGCAGGACGATGAGAGGAGATGGGCACAGCACGAGCCAATGAGATAAACTGATAAGTGAGAAACAATGGAACTTTGGAACACTCTTCAGGCAAACCACATGCTGATGGAATACGGTTACAACGACTGCAAACGTTAGTTGGTGTTAGAGATAATTGAACAATTAAAATAATTAAAATAAAACTAACTTTTTGTTCAGGGAGTCATGTAYGTAGTTGGTTGGACAGTCGATCGAATGACACTTGAATGATCCGAGGGTGTTCACACATACTTTATCCGTTCCAGCACATTCACCCATTGCACATTCATCCACATCTAAAAATAAATAATTAACCGATTGTAGGAGAACTCATTCTTTGGTAGTATTCTCGATTATTAGTTGGAAGAAATGAAATGAAGTATGTGAAACAAGAATTTTTCGCAAAAAAAGTTATCTAATAACTGCAAAAATTAGGGCCTAGCGGGTTAAGGGAAGCAAAGTGCATCCAATTTAAGGGGTTTTTTGTTAAAATATAAAATTTTTAAGTTTTTTGTAAAATCGTTTTTATGTGATTTTGGTTGGCGCCTTTTGCCTAATACCCAAAGAAATGATTTTTTTCGAAAAAGAAAAGTCAAACAACTAAGTTTCCCAGTTTCAAATGTTTCATTTTTTTCTAGAATGTTTGTCTTTCTATGAATTGGCGCACACTCACCGACACAAGTCCTTCCATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TACGTA</site>
                <isoschizomers>
                    <enzyme>BstSNI</enzyme>
                    <enzyme>Eco105I</enzyme>
                    <enzyme>SnaBI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>501 422 77</canonical_bands>
                <polymorphic_bands>578 422</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGCCAATGAGATAAACTGATAA</pcr_primer_p1>
		<pcr_primer_p2>GAACGGATAAAGTATGTGTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAGCCAATGAGATAAACTGATAAGTGAGAAACAATGGAACTTTGGAACACTCTTCAGGCAAACCACATGCTGATGGAATACGGTTACAACGACTGCAAACGTTAGTTGGTGTTAGAGATAATTGAACAATTAAAATAATTAAAATAAAACTAACTTTTTGTTCAGGGAGTCATGTACGTAGTTGGTTGGACAGTCGATCGAATGACACTTGAATGATCCGAGGGTGTTCACACATACTTTATCCGTTC</canonical_amplicon>
		<polymorphic_amplicon>GAGCCAATGAGATAAACTGATAAGTGAGAAACAATGGAACTTTGGAACACTCTTCAGGCAAACCACATGCTGATGGAATACGGTTACAACGACTGCAAACGTTAGTTGGTGTTAGAGATAATTGAACAATTAAAATAATTAAAATAAAACTAACTTTTTGTTCAGGGAGTCATGTAYGTAGTTGGTTGGACAGTCGATCGAATGACACTTGAATGATCCGAGGGTGTTCACACATACTTTATCCGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7674</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>49093</contig_pos>
        <strand>+</strand>
        <context>AATTTGATTA[A/T]TTGAAGTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTATAAGAGAAACCATCACATCAGTTCTCGGTTGAACAAAATTTGATTA</left_flank>
        <right_flank>TTGAAGTTTTCGAAACATTAAAAAATTTAGTAAAAATCAACCTTGTTATT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTAATTATGGATCACCATCAAACCTATAGCTTCCTTGAGTGTTCCTACACTGATACAATGGTCCACAGTCATGTGATCCCAAGTTGCATTCATCAACGTCTGAAAATTTGGACAGGTTTTTTGGGAACAAATTGGCCCAAGTTACTTGGGGCTTCCCTATATTATACATTATTTCGAAGCATTATATGTTTTAATCTAGGAAATTTTGAAATTGTGGGATTAAAAAAGAATGTTAGTAAAAAGTTAGCAAACCACGGCACTGTTCAGTCGCTGAGTCCATAGCGTATCCGGTTCCACATGATAGTGTTCGAATGCATTTGAAACTTCCTGGAGTGTTCAAACAACGTTGCGATTCTAGACAATCATCCATCAAAGTGGCACACTCGTCGATATCTGGAGATTGGATTAGTACATTTATTAGCTCAAAATGAACACAGCACACTAATTCTATAAGAGAAACCATCACATCAGTTCTCGGTTGAACAAAATTTGATTATTTGAAGTTTTCGAAACATTAAAAAATTTAGTAAAAATCAACCTTGTTATTTCTAATGTTTTTCTTGAAAAATAGTTGAAACATTTTCAGGATACCTTCACATTGAACGTTAGTATCACTCCAATAATATCCTCGATTACAGACGCATGTTCCATCGCCTCGGTTGTTGTCAGGAGAGGGTAGACAGTGTTGATTGGGATGGAAACACGGATGGTGAAGGGAGCATTCTGTGGAGGGTTAGAAGGGTTAGAAGGCTCTGACGATTAGACAAATGATAGGGAAGATGTTTGAGTGAAGCAAAGCGTTATTAGTTGTTATTTAGTTTCGGTTTCGTGAATGGATTATTATACGATTTTAACAATGAATTGTAGTATCTGCAGCTTTTTCGGTACCGTTCCAAGTTATTAAGAACATAATTATCTTTGAATCTCAGAAGAACTGGACGATATGCACGGATAGTCAAAAAAGATCTCTGTTTTCCCTATAACTTATCTTTTCAAA</canonical>
            <polymorphic>AATTTAATTATGGATCACCATCAAACCTATAGCTTCCTTGAGTGTTCCTACACTGATACAATGGTCCACAGTCATGTGATCCCAAGTTGCATTCATCAACGTCTGAAAATTTGGACAGGTTTTTTGGGAACAAATTGGCCCAAGTTACTTGGGGCTTCCCTATATTATACATTATTTCGAAGCATTATATGTTTTAATCTAGGAAATTTTGAAATTGTGGGATTAAAAAAGAATGTTAGTAAAAAGTTAGCAAACCACGGCACTGTTCAGTCGCTGAGTCCATAGCGTATCCGGTTCCACATGATAGTGTTCGAATGCATTTGAAACTTCCTGGAGTGTTCAAACAACGTTGCGATTCTAGACAATCATCCATCAAAGTGGCACACTCGTCGATATCTGGAGATTGGATTAGTACATTTATTAGCTCAAAATGAACACAGCACACTAATTCTATAAGAGAAACCATCACATCAGTTCTCGGTTGAACAAAATTTGATTAWTTGAAGTTTTCGAAACATTAAAAAATTTAGTAAAAATCAACCTTGTTATTTCTAATGTTTTTCTTGAAAAATAGTTGAAACATTTTCAGGATACCTTCACATTGAACGTTAGTATCACTCCAATAATATCCTCGATTACAGACGCATGTTCCATCGCCTCGGTTGTTGTCAGGAGAGGGTAGACAGTGTTGATTGGGATGGAAACACGGATGGTGAAGGGAGCATTCTGTGGAGGGTTAGAAGGGTTAGAAGGCTCTGACGATTAGACAAATGATAGGGAAGATGTTTGAGTGAAGCAAAGCGTTATTAGTTGTTATTTAGTTTCGGTTTCGTGAATGGATTATTATACGATTTTAACAATGAATTGTAGTATCTGCAGCTTTTTCGGTACCGTTCCAAGTTATTAAGAACATAATTATCTTTGAATCTCAGAAGAACTGGACGATATGCACGGATAGTCAAAAAAGATCTCTGTTTTCCCTATAACTTATCTTTTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATATCTGGAGATTGGATTAG</pcr_primer_p1>
		<pcr_primer_p2>TAATCGAGGATATTATTGGAGTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGATATCTGGAGATTGGATTAGTACATTTATTAGCTCAAAATGAACACAGCACACTAATTCTATAAGAGAAACCATCACATCAGTTCTCGGTTGAACAAAATTTGATTATTTGAAGTTTTCGAAACATTAAAAAATTTAGTAAAAATCAACCTTGTTATTTCTAATGTTTTTCTTGAAAAATAGTTGAAACATTTTCAGGATACCTTCACATTGAACGTTAGTATCACTCCAATAATATCCTCGATTA</canonical_amplicon>
		<polymorphic_amplicon>CGATATCTGGAGATTGGATTAGTACATTTATTAGCTCAAAATGAACACAGCACACTAATTCTATAAGAGAAACCATCACATCAGTTCTCGGTTGAACAAAATTTGATTAWTTGAAGTTTTCGAAACATTAAAAAATTTAGTAAAAATCAACCTTGTTATTTCTAATGTTTTTCTTGAAAAATAGTTGAAACATTTTCAGGATACCTTCACATTGAACGTTAGTATCACTCCAATAATATCCTCGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7675</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>49057</contig_pos>
        <strand>+</strand>
        <context>TRAGAGAAAC[C/T]ATCACATCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACATTTATTAGCTCAAAATGAACACAGCACACTAATTCTATAAGAGAAAC</left_flank>
        <right_flank>ATCACATCAGTTCTCGGTTGAACAAAATTTGATTATTTGAAGTTTTCGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACATTTCTTTGGATCACATCTAAAAGAAATAAATAAATTTAATTATGGATCACCATCAAACCTATAGCTTCCTTGAGTGTTCCTACACTGATACAATGGTCCACAGTCATGTGATCCCAAGTTGCATTCATCAACGTCTGAAAATTTGGACAGGTTTTTTGGGAACAAATTGGCCCAAGTTACTTGGGGCTTCCCTATATTATACATTATTTCGAAGCATTATATGTTTTAATCTAGGAAATTTTGAAATTGTGGGATTAAAAAAGAATGTTAGTAAAAAGTTAGCAAACCACGGCACTGTTCAGTCGCTGAGTCCATAGCGTATCCGGTTCCACATGATAGTGTTCGAATGCATTTGAAACTTCCTGGAGTGTTCAAACAACGTTGCGATTCTAGACAATCATCCATCAAAGTGGCACACTCGTCGATATCTGGAGATTGGATTAGTACATTTATTAGCTCAAAATGAACACAGCACACTAATTCTATAAGAGAAACCATCACATCAGTTCTCGGTTGAACAAAATTTGATTATTTGAAGTTTTCGAAACATTAAAAAATTTAGTAAAAATCAACCTTGTTATTTCTAATGTTTTTCTTGAAAAATAGTTGAAACATTTTCAGGATACCTTCACATTGAACGTTAGTATCACTCCAATAATATCCTCGATTACAGACGCATGTTCCATCGCCTCGGTTGTTGTCAGGAGAGGGTAGACAGTGTTGATTGGGATGGAAACACGGATGGTGAAGGGAGCATTCTGTGGAGGGTTAGAAGGGTTAGAAGGCTCTGACGATTAGACAAATGATAGGGAAGATGTTTGAGTGAAGCAAAGCGTTATTAGTTGTTATTTAGTTTCGGTTTCGTGAATGGATTATTATACGATTTTAACAATGAATTGTAGTATCTGCAGCTTTTTCGGTACCGTTCCAAGTTATTAAGAACATAATTATCTTTGAATCTCAGAAGAACTGGACGATATGCACGGATAGTCAAAA</canonical>
            <polymorphic>CACATTTCTTTGGATCACATCTAAAAGAAATAAATAAATTTAATTATGGATCACCATCAAACCTATAGCTTCCTTGAGTGTTCCTACACTGATACAATGGTCCACAGTCATGTGATCCCAAGTTGCATTCATCAACGTCTGAAAATTTGGACAGGTTTTTTGGGAACAAATTGGCCCAAGTTACTTGGGGCTTCCCTATATTATACATTATTTCGAAGCATTATATGTTTTAATCTAGGAAATTTTGAAATTGTGGGATTAAAAAAGAATGTTAGTAAAAAGTTAGCAAACCACGGCACTGTTCAGTCGCTGAGTCCATAGCGTATCCGGTTCCACATGATAGTGTTCGAATGCATTTGAAACTTCCTGGAGTGTTCAAACAACGTTGCGATTCTAGACAATCATCCATCAAAGTGGCACACTCGTCGATATCTGGAGATTGGATTAGTACATTTATTAGCTCAAAATGAACACAGCACACTAATTCTATAAGAGAAACYATCACATCAGTTCTCGGTTGAACAAAATTTGATTATTTGAAGTTTTCGAAACATTAAAAAATTTAGTAAAAATCAACCTTGTTATTTCTAATGTTTTTCTTGAAAAATAGTTGAAACATTTTCAGGATACCTTCACATTGAACGTTAGTATCACTCCAATAATATCCTCGATTACAGACGCATGTTCCATCGCCTCGGTTGTTGTCAGGAGAGGGTAGACAGTGTTGATTGGGATGGAAACACGGATGGTGAAGGGAGCATTCTGTGGAGGGTTAGAAGGGTTAGAAGGCTCTGACGATTAGACAAATGATAGGGAAGATGTTTGAGTGAAGCAAAGCGTTATTAGTTGTTATTTAGTTTCGGTTTCGTGAATGGATTATTATACGATTTTAACAATGAATTGTAGTATCTGCAGCTTTTTCGGTACCGTTCCAAGTTATTAAGAACATAATTATCTTTGAATCTCAGAAGAACTGGACGATATGCACGGATAGTCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATATCTGGAGATTGGATTAG</pcr_primer_p1>
		<pcr_primer_p2>TAATCGAGGATATTATTGGAGTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGATATCTGGAGATTGGATTAGTACATTTATTAGCTCAAAATGAACACAGCACACTAATTCTATAAGAGAAACCATCACATCAGTTCTCGGTTGAACAAAATTTGATTATTTGAAGTTTTCGAAACATTAAAAAATTTAGTAAAAATCAACCTTGTTATTTCTAATGTTTTTCTTGAAAAATAGTTGAAACATTTTCAGGATACCTTCACATTGAACGTTAGTATCACTCCAATAATATCCTCGATTA</canonical_amplicon>
		<polymorphic_amplicon>CGATATCTGGAGATTGGATTAGTACATTTATTAGCTCAAAATGAACACAGCACACTAATTCTATAAGAGAAACYATCACATCAGTTCTCGGTTGAACAAAATTTGATTATTTGAAGTTTTCGAAACATTAAAAAATTTAGTAAAAATCAACCTTGTTATTTCTAATGTTTTTCTTGAAAAATAGTTGAAACATTTTCAGGATACCTTCACATTGAACGTTAGTATCACTCCAATAATATCCTCGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7676</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>49048</contig_pos>
        <strand>+</strand>
        <context>CTAATTCTAT[A/G]AGAGAAACYA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGATTAGTACATTTATTAGCTCAAAATGAACACAGCACACTAATTCTAT</left_flank>
        <right_flank>AGAGAAACCATCACATCAGTTCTCGGTTGAACAAAATTTGATTATTTGAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACCATCTCCACATTTCTTTGGATCACATCTAAAAGAAATAAATAAATTTAATTATGGATCACCATCAAACCTATAGCTTCCTTGAGTGTTCCTACACTGATACAATGGTCCACAGTCATGTGATCCCAAGTTGCATTCATCAACGTCTGAAAATTTGGACAGGTTTTTTGGGAACAAATTGGCCCAAGTTACTTGGGGCTTCCCTATATTATACATTATTTCGAAGCATTATATGTTTTAATCTAGGAAATTTTGAAATTGTGGGATTAAAAAAGAATGTTAGTAAAAAGTTAGCAAACCACGGCACTGTTCAGTCGCTGAGTCCATAGCGTATCCGGTTCCACATGATAGTGTTCGAATGCATTTGAAACTTCCTGGAGTGTTCAAACAACGTTGCGATTCTAGACAATCATCCATCAAAGTGGCACACTCGTCGATATCTGGAGATTGGATTAGTACATTTATTAGCTCAAAATGAACACAGCACACTAATTCTATAAGAGAAACCATCACATCAGTTCTCGGTTGAACAAAATTTGATTATTTGAAGTTTTCGAAACATTAAAAAATTTAGTAAAAATCAACCTTGTTATTTCTAATGTTTTTCTTGAAAAATAGTTGAAACATTTTCAGGATACCTTCACATTGAACGTTAGTATCACTCCAATAATATCCTCGATTACAGACGCATGTTCCATCGCCTCGGTTGTTGTCAGGAGAGGGTAGACAGTGTTGATTGGGATGGAAACACGGATGGTGAAGGGAGCATTCTGTGGAGGGTTAGAAGGGTTAGAAGGCTCTGACGATTAGACAAATGATAGGGAAGATGTTTGAGTGAAGCAAAGCGTTATTAGTTGTTATTTAGTTTCGGTTTCGTGAATGGATTATTATACGATTTTAACAATGAATTGTAGTATCTGCAGCTTTTTCGGTACCGTTCCAAGTTATTAAGAACATAATTATCTTTGAATCTCAGAAGAACTGGACGATATGCACGGA</canonical>
            <polymorphic>CACCATCTCCACATTTCTTTGGATCACATCTAAAAGAAATAAATAAATTTAATTATGGATCACCATCAAACCTATAGCTTCCTTGAGTGTTCCTACACTGATACAATGGTCCACAGTCATGTGATCCCAAGTTGCATTCATCAACGTCTGAAAATTTGGACAGGTTTTTTGGGAACAAATTGGCCCAAGTTACTTGGGGCTTCCCTATATTATACATTATTTCGAAGCATTATATGTTTTAATCTAGGAAATTTTGAAATTGTGGGATTAAAAAAGAATGTTAGTAAAAAGTTAGCAAACCACGGCACTGTTCAGTCGCTGAGTCCATAGCGTATCCGGTTCCACATGATAGTGTTCGAATGCATTTGAAACTTCCTGGAGTGTTCAAACAACGTTGCGATTCTAGACAATCATCCATCAAAGTGGCACACTCGTCGATATCTGGAGATTGGATTAGTACATTTATTAGCTCAAAATGAACACAGCACACTAATTCTATRAGAGAAACCATCACATCAGTTCTCGGTTGAACAAAATTTGATTATTTGAAGTTTTCGAAACATTAAAAAATTTAGTAAAAATCAACCTTGTTATTTCTAATGTTTTTCTTGAAAAATAGTTGAAACATTTTCAGGATACCTTCACATTGAACGTTAGTATCACTCCAATAATATCCTCGATTACAGACGCATGTTCCATCGCCTCGGTTGTTGTCAGGAGAGGGTAGACAGTGTTGATTGGGATGGAAACACGGATGGTGAAGGGAGCATTCTGTGGAGGGTTAGAAGGGTTAGAAGGCTCTGACGATTAGACAAATGATAGGGAAGATGTTTGAGTGAAGCAAAGCGTTATTAGTTGTTATTTAGTTTCGGTTTCGTGAATGGATTATTATACGATTTTAACAATGAATTGTAGTATCTGCAGCTTTTTCGGTACCGTTCCAAGTTATTAAGAACATAATTATCTTTGAATCTCAGAAGAACTGGACGATATGCACGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATATCTGGAGATTGGATTAG</pcr_primer_p1>
		<pcr_primer_p2>TAATCGAGGATATTATTGGAGTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGATATCTGGAGATTGGATTAGTACATTTATTAGCTCAAAATGAACACAGCACACTAATTCTATAAGAGAAACCATCACATCAGTTCTCGGTTGAACAAAATTTGATTATTTGAAGTTTTCGAAACATTAAAAAATTTAGTAAAAATCAACCTTGTTATTTCTAATGTTTTTCTTGAAAAATAGTTGAAACATTTTCAGGATACCTTCACATTGAACGTTAGTATCACTCCAATAATATCCTCGATTA</canonical_amplicon>
		<polymorphic_amplicon>CGATATCTGGAGATTGGATTAGTACATTTATTAGCTCAAAATGAACACAGCACACTAATTCTATRAGAGAAACCATCACATCAGTTCTCGGTTGAACAAAATTTGATTATTTGAAGTTTTCGAAACATTAAAAAATTTAGTAAAAATCAACCTTGTTATTTCTAATGTTTTTCTTGAAAAATAGTTGAAACATTTTCAGGATACCTTCACATTGAACGTTAGTATCACTCCAATAATATCCTCGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7677</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>48716</contig_pos>
        <strand>+</strand>
        <context>GGACAGGTTT[C/T]TTGGGAACAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATGTGATCCCAAGTTGCATTCATCAACGTCTGAAAATTTGGACAGGTTT</left_flank>
        <right_flank>TTGGGAACAAATTGGCCCAAGTTACTTGGGGCTTCCCTATATTATACATT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGCAGAATCCAGTAGCATCATTGACTTCATAACCATGAGCACAGAGATTTCCCTTTTGCTGACATCTGAATGATCCAGGAGTATTAACACACTCTTCACCAGCTCCACAGTTATGACCAGTCACGCATTCATCGATGTCTGAAAAAAAATAATAATTTGTGTTTCAGATAATCAGTATGAATGTGAAAGGATTTCGAGGGACAGTGGTTGATTCTTAGACGCATGCTATAAAATAACCCATTCAACTTACCATTACACATTCCACTCTTTGGATAGTATCCATTTGGACAAGTGATCGATGTACACTCCCCTGTCATTGGATTCTGAAGCTCACCATCTCCACATTTCTTTGGATCACATCTAAAAGAAATAAATAAATTTAATTATGGATCACCATCAAACCTATAGCTTCCTTGAGTGTTCCTACACTGATACAATGGTCCACAGTCATGTGATCCCAAGTTGCATTCATCAACGTCTGAAAATTTGGACAGGTTTTTTGGGAACAAATTGGCCCAAGTTACTTGGGGCTTCCCTATATTATACATTATTTCGAAGCATTATATGTTTTAATCTAGGAAATTTTGAAATTGTGGGATTAAAAAAGAATGTTAGTAAAAAGTTAGCAAACCACGGCACTGTTCAGTCGCTGAGTCCATAGCGTATCCGGTTCCACATGATAGTGTTCGAATGCATTTGAAACTTCCTGGAGTGTTCAAACAACGTTGCGATTCTAGACAATCATCCATCAAAGTGGCACACTCGTCGATATCTGGAGATTGGATTAGTACATTTATTAGCTCAAAATGAACACAGCACACTAATTCTATAAGAGAAACCATCACATCAGTTCTCGGTTGAACAAAATTTGATTATTTGAAGTTTTCGAAACATTAAAAAATTTAGTAAAAATCAACCTTGTTATTTCTAATGTTTTTCTTGAAAAATAGTTGAAACATTTTCAGGATACCTTCACATTGAACGTTAGTATCACTCCAA</canonical>
            <polymorphic>TCGCAGAATCCAGTAGCATCATTGACTTCATAACCATGAGCACAGAGATTTCCCTTTTGCTGACATCTGAATGATCCAGGAGTATTAACACACTCTTCACCAGCTCCACAGTTATGACCAGTCACGCATTCATCGATGTCTGAAAAAAAATAATAATTTGTGTTTCAGATAATCAGTATGAATGTGAAAGGATTTCGAGGGACAGTGGTTGATTCTTAGACGCATGCTATAAAATAACCCATTCAACTTACCATTACACATTCCACTCTTTGGATAGTATCCATTTGGACAAGTGATCGATGTACACTCCCCTGTCATTGGATTCTGAAGCTCACCATCTCCACATTTCTTTGGATCACATCTAAAAGAAATAAATAAATTTAATTATGGATCACCATCAAACCTATAGCTTCCTTGAGTGTTCCTACACTGATACAATGGTCCACAGTCATGTGATCCCAAGTTGCATTCATCAACGTCTGAAAATTTGGACAGGTTTYTTGGGAACAAATTGGCCCAAGTTACTTGGGGCTTCCCTATATTATACATTATTTCGAAGCATTATATGTTTTAATCTAGGAAATTTTGAAATTGTGGGATTAAAAAAGAATGTTAGTAAAAAGTTAGCAAACCACGGCACTGTTCAGTCGCTGAGTCCATAGCGTATCCGGTTCCACATGATAGTGTTCGAATGCATTTGAAACTTCCTGGAGTGTTCAAACAACGTTGCGATTCTAGACAATCATCCATCAAAGTGGCACACTCGTCGATATCTGGAGATTGGATTAGTACATTTATTAGCTCAAAATGAACACAGCACACTAATTCTATAAGAGAAACCATCACATCAGTTCTCGGTTGAACAAAATTTGATTATTTGAAGTTTTCGAAACATTAAAAAATTTAGTAAAAATCAACCTTGTTATTTCTAATGTTTTTCTTGAAAAATAGTTGAAACATTTTCAGGATACCTTCACATTGAACGTTAGTATCACTCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGGATCACCATCAAACCTAT</pcr_primer_p1>
		<pcr_primer_p2>CGTGGTTTGCTAACTTTTTACTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATGGATCACCATCAAACCTATAGCTTCCTTGAGTGTTCCTACACTGATACAATGGTCCACAGTCATGTGATCCCAAGTTGCATTCATCAACGTCTGAAAATTTGGACAGGTTTTTTGGGAACAAATTGGCCCAAGTTACTTGGGGCTTCCCTATATTATACATTATTTCGAAGCATTATATGTTTTAATCTAGGAAATTTTGAAATTGTGGGATTAAAAAAGAATGTTAGTAAAAAGTTAGCAAACCACG</canonical_amplicon>
		<polymorphic_amplicon>TATGGATCACCATCAAACCTATAGCTTCCTTGAGTGTTCCTACACTGATACAATGGTCCACAGTCATGTGATCCCAAGTTGCATTCATCAACGTCTGAAAATTTGGACAGGTTTYTTGGGAACAAATTGGCCCAAGTTACTTGGGGCTTCCCTATATTATACATTATTTCGAAGCATTATATGTTTTAATCTAGGAAATTTTGAAATTGTGGGATTAAAAAAGAATGTTAGTAAAAAGTTAGCAAACCACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7678</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>48591</contig_pos>
        <strand>+</strand>
        <context>AAAGAAATAA[A/G]TAAATTTAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGAAGCTCACCATCTCCACATTTCTTTGGATCACATCTAAAAGAAATAA</left_flank>
        <right_flank>TAAATTTAATTATGGATCACCATCAAACCTATAGCTTCCTTGAGTGTTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGATTTGATATACTTACACCTCCGATGTAAAACTTTTACAAATGTTTCTGTTTCTCTATCACAACTTGATCATTAACCATTGACTACGACAATTTTCTTGACGATAATTTTTCAAAACTAACCTTCGCAGAATCCAGTAGCATCATTGACTTCATAACCATGAGCACAGAGATTTCCCTTTTGCTGACATCTGAATGATCCAGGAGTATTAACACACTCTTCACCAGCTCCACAGTTATGACCAGTCACGCATTCATCGATGTCTGAAAAAAAATAATAATTTGTGTTTCAGATAATCAGTATGAATGTGAAAGGATTTCGAGGGACAGTGGTTGATTCTTAGACGCATGCTATAAAATAACCCATTCAACTTACCATTACACATTCCACTCTTTGGATAGTATCCATTTGGACAAGTGATCGATGTACACTCCCCTGTCATTGGATTCTGAAGCTCACCATCTCCACATTTCTTTGGATCACATCTAAAAGAAATAAATAAATTTAATTATGGATCACCATCAAACCTATAGCTTCCTTGAGTGTTCCTACACTGATACAATGGTCCACAGTCATGTGATCCCAAGTTGCATTCATCAACGTCTGAAAATTTGGACAGGTTTTTTGGGAACAAATTGGCCCAAGTTACTTGGGGCTTCCCTATATTATACATTATTTCGAAGCATTATATGTTTTAATCTAGGAAATTTTGAAATTGTGGGATTAAAAAAGAATGTTAGTAAAAAGTTAGCAAACCACGGCACTGTTCAGTCGCTGAGTCCATAGCGTATCCGGTTCCACATGATAGTGTTCGAATGCATTTGAAACTTCCTGGAGTGTTCAAACAACGTTGCGATTCTAGACAATCATCCATCAAAGTGGCACACTCGTCGATATCTGGAGATTGGATTAGTACATTTATTAGCTCAAAATGAACACAGCACACTAATTCTATAAGAGAAACCATCACATCAGTTCTCGGTTGAACAAAATTTGATT</canonical>
            <polymorphic>CTGATTTGATATACTTACACCTCCGATGTAAAACTTTTACAAATGTTTCTGTTTCTCTATCACAACTTGATCATTAACCATTGACTACGACAATTTTCTTGACGATAATTTTTCAAAACTAACCTTCGCAGAATCCAGTAGCATCATTGACTTCATAACCATGAGCACAGAGATTTCCCTTTTGCTGACATCTGAATGATCCAGGAGTATTAACACACTCTTCACCAGCTCCACAGTTATGACCAGTCACGCATTCATCGATGTCTGAAAAAAAATAATAATTTGTGTTTCAGATAATCAGTATGAATGTGAAAGGATTTCGAGGGACAGTGGTTGATTCTTAGACGCATGCTATAAAATAACCCATTCAACTTACCATTACACATTCCACTCTTTGGATAGTATCCATTTGGACAAGTGATCGATGTACACTCCCCTGTCATTGGATTCTGAAGCTCACCATCTCCACATTTCTTTGGATCACATCTAAAAGAAATAARTAAATTTAATTATGGATCACCATCAAACCTATAGCTTCCTTGAGTGTTCCTACACTGATACAATGGTCCACAGTCATGTGATCCCAAGTTGCATTCATCAACGTCTGAAAATTTGGACAGGTTTTTTGGGAACAAATTGGCCCAAGTTACTTGGGGCTTCCCTATATTATACATTATTTCGAAGCATTATATGTTTTAATCTAGGAAATTTTGAAATTGTGGGATTAAAAAAGAATGTTAGTAAAAAGTTAGCAAACCACGGCACTGTTCAGTCGCTGAGTCCATAGCGTATCCGGTTCCACATGATAGTGTTCGAATGCATTTGAAACTTCCTGGAGTGTTCAAACAACGTTGCGATTCTAGACAATCATCCATCAAAGTGGCACACTCGTCGATATCTGGAGATTGGATTAGTACATTTATTAGCTCAAAATGAACACAGCACACTAATTCTATAAGAGAAACCATCACATCAGTTCTCGGTTGAACAAAATTTGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGACAGTGGTTGATTCTTAGAC</pcr_primer_p1>
		<pcr_primer_p2>GTGGACCATTGTATCAGTGTAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGACAGTGGTTGATTCTTAGACGCATGCTATAAAATAACCCATTCAACTTACCATTACACATTCCACTCTTTGGATAGTATCCATTTGGACAAGTGATCGATGTACACTCCCCTGTCATTGGATTCTGAAGCTCACCATCTCCACATTTCTTTGGATCACATCTAAAAGAAATAAATAAATTTAATTATGGATCACCATCAAACCTATAGCTTCCTTGAGTGTTCCTACACTGATACAATGGTCCAC</canonical_amplicon>
		<polymorphic_amplicon>GGACAGTGGTTGATTCTTAGACGCATGCTATAAAATAACCCATTCAACTTACCATTACACATTCCACTCTTTGGATAGTATCCATTTGGACAAGTGATCGATGTACACTCCCCTGTCATTGGATTCTGAAGCTCACCATCTCCACATTTCTTTGGATCACATCTAAAAGAAATAARTAAATTTAATTATGGATCACCATCAAACCTATAGCTTCCTTGAGTGTTCCTACACTGATACAATGGTCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7698</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>93419</contig_pos>
        <strand>+</strand>
        <context>TTCAGAGAAG[C/T]TCGCATTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACCGAGATAGATTATGTCAAACTTGACTTTTATATTGAATTCAGAGAAG</left_flank>
        <right_flank>TCGCATTTTTTCAGTTTTATCTGTTGTATAGGTTTTATAAGTTTGAATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATCATTTCCATTTAACTCGGTTCCTGTAAAAGACATCAAAAAGTGCCAAACTGAAAAATGTTAATTATATTATCAAAAATATTTTGTCAGTCAACCACTTTTTGATATCTTTCACAGGAATCGAGATAAATTGGATCAAAGTTAAAAGCTAGGGGTCATTTAAATAATTTTTATGGTGGTTAATACATGAAACTCTTATCAAATCTCCAAATTTATGAGAATTTTATGAAAACTCAATAAAGCAAAAAACAATTTTTTAGAGAGTTAATCGTTCATCGATACTGTAACACCAATTGTTATCTTTAAATATGAAATAAAAGAGCCAAACTTGATCCAATTCATCTAGTTTCCTGTGAAAGATGTTATGAATCGATCAACTGACAAAGTGCTTTTGGTATTATGATAAACATTTTATCAGTTGACCACTTTTTTATATCTTTCATAGGAACCGAGATAGATTATGTCAAACTTGACTTTTATATTGAATTCAGAGAAGTTCGCATTTTTTCAGTTTTATCTGTTGTATAGGTTTTATAAGTTTGAATATCTTCTCATTGGAACTTTGAGTCAGAGTGGAGAAATATGAGATTTTTCAGAAAGTTTCAGATCCAATATTATCAAAAATGTTCTTGGCCACTTTTTGATATCTTTCAACACGGCCAAGAAAAATAAGGTCCTTGGATTCCCCTTATCATAATCTTCGACACTACCGCAACGTGGTGCACATAATCCGTTCCTCCTGACTTTGATCACTTTCTAGATGTTACTATTATTAACATCCAATGTGAAATATTGAAAACAAATATCTTATGATAGTCGTCGGATTAGTTCTTAATGCTTCTATTGTATATTTTTTGTAATAATCGTCAAATATCACCTAGACATTATGTGGCGTTGTTTTTAATAATAAAAGCAAAGCAAGCAGTCGATAACCAGGAACGGAAACGGAGCAATATTTTCTAGAATTTTCTAAGTTTGATGTTGACTCCTCGAAACA</canonical>
            <polymorphic>AAAATCATTTCCATTTAACTCGGTTCCTGTAAAAGACATCAAAAAGTGCCAAACTGAAAAATGTTAATTATATTATCAAAAATATTTTGTCAGTCAACCACTTTTTGATATCTTTCACAGGAATCGAGATAAATTGGATCAAAGTTAAAAGCTAGGGGTCATTTAAATAATTTTTATGGTGGTTAATACATGAAACTCTTATCAAATCTCCAAATTTATGAGAATTTTATGAAAACTCAATAAAGCAAAAAACAATTTTTTAGAGAGTTAATCGTTCATCGATACTGTAACACCAATTGTTATCTTTAAATATGAAATAAAAGAGCCAAACTTGATCCAATTCATCTAGTTTCCTGTGAAAGATGTTATGAATCGATCAACTGACAAAGTGCTTTTGGTATTATGATAAACATTTTATCAGTTGACCACTTTTTTATATCTTTCATAGGAACCGAGATAGATTATGTCAAACTTGACTTTTATATTGAATTCAGAGAAGYTCGCATTTTTTCAGTTTTATCTGTTGTATAGGTTTTATAAGTTTGAATATCTTCTCATTGGAACTTTGAGTCAGAGTGGAGAAATATGAGATTTTTCAGAAAGTTTCAGATCCAATATTATCAAAAATGTTCTTGGCCACTTTTTGATATCTTTCAACACGGCCAAGAAAAATAAGGTCCTTGGATTCCCCTTATCATAATCTTCGACACTACCGCAACGTGGTGCACATAATCCGTTCCTCCTGACTTTGATCACTTTCTAGATGTTACTATTATTAACATCCAATGTGAAATATTGAAAACAAATATCTTATGATAGTCGTCGGATTAGTTCTTAATGCTTCTATTGTATATTTTTTGTAATAATCGTCAAATATCACCTAGACATTATGTGGCGTTGTTTTTAATAATAAAAGCAAAGCAAGCAGTCGATAACCAGGAACGGAAACGGAGCAATATTTTCTAGAATTTTCTAAGTTTGATGTTGACTCCTCGAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTGTAACACCAATTGTTATCTTTA</pcr_primer_p1>
		<pcr_primer_p2>TTCCAATGAGAAGATATTCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>281</pcr_amplicon_size>
		<canonical_amplicon>TACTGTAACACCAATTGTTATCTTTAAATATGAAATAAAAGAGCCAAACTTGATCCAATTCATCTAGTTTCCTGTGAAAGATGTTATGAATCGATCAACTGACAAAGTGCTTTTGGTATTATGATAAACATTTTATCAGTTGACCACTTTTTTATATCTTTCATAGGAACCGAGATAGATTATGTCAAACTTGACTTTTATATTGAATTCAGAGAAGTTCGCATTTTTTCAGTTTTATCTGTTGTATAGGTTTTATAAGTTTGAATATCTTCTCATTGGAA</canonical_amplicon>
		<polymorphic_amplicon>TACTGTAACACCAATTGTTATCTTTAAATATGAAATAAAAGAGCCAAACTTGATCCAATTCATCTAGTTTCCTGTGAAAGATGTTATGAATCGATCAACTGACAAAGTGCTTTTGGTATTATGATAAACATTTTATCAGTTGACCACTTTTTTATATCTTTCATAGGAACCGAGATAGATTATGTCAAACTTGACTTTTATATTGAATTCAGAGAAGYTCGCATTTTTTCAGTTTTATCTGTTGTATAGGTTTTATAAGTTTGAATATCTTCTCATTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7699</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>93437</contig_pos>
        <strand></strand>
        <context>TTTTCAGTTT[T/C]YTCTGTTGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAAACTTGACTTTTATATTGAATTCAGAGAAGTTCGCATTTTTTCAGTTT</left_flank>
        <right_flank>ATCTGTTGTATAGGTTTTATAAGTTTGAATATCTTCTCATTGGAACTTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGGTTCCTGTAAAAGACATCAAAAAGTGCCAAACTGAAAAATGTTAATTATATTATCAAAAATATTTTGTCAGTCAACCACTTTTTGATATCTTTCACAGGAATCGAGATAAATTGGATCAAAGTTAAAAGCTAGGGGTCATTTAAATAATTTTTATGGTGGTTAATACATGAAACTCTTATCAAATCTCCAAATTTATGAGAATTTTATGAAAACTCAATAAAGCAAAAAACAATTTTTTAGAGAGTTAATCGTTCATCGATACTGTAACACCAATTGTTATCTTTAAATATGAAATAAAAGAGCCAAACTTGATCCAATTCATCTAGTTTCCTGTGAAAGATGTTATGAATCGATCAACTGACAAAGTGCTTTTGGTATTATGATAAACATTTTATCAGTTGACCACTTTTTTATATCTTTCATAGGAACCGAGATAGATTATGTCAAACTTGACTTTTATATTGAATTCAGAGAAGTTCGCATTTTTTCAGTTTTATCTGTTGTATAGGTTTTATAAGTTTGAATATCTTCTCATTGGAACTTTGAGTCAGAGTGGAGAAATATGAGATTTTTCAGAAAGTTTCAGATCCAATATTATCAAAAATGTTCTTGGCCACTTTTTGATATCTTTCAACACGGCCAAGAAAAATAAGGTCCTTGGATTCCCCTTATCATAATCTTCGACACTACCGCAACGTGGTGCACATAATCCGTTCCTCCTGACTTTGATCACTTTCTAGATGTTACTATTATTAACATCCAATGTGAAATATTGAAAACAAATATCTTATGATAGTCGTCGGATTAGTTCTTAATGCTTCTATTGTATATTTTTTGTAATAATCGTCAAATATCACCTAGACATTATGTGGCGTTGTTTTTAATAATAAAAGCAAAGCAAGCAGTCGATAACCAGGAACGGAAACGGAGCAATATTTTCTAGAATTTTCTAAGTTTGATGTTGACTCCTCGAAACATTGAAGTTTTGAAATAGT</canonical>
            <polymorphic>CTCGGTTCCTGTAAAAGACATCAAAAAGTGCCAAACTGAAAAATGTTAATTATATTATCAAAAATATTTTGTCAGTCAACCACTTTTTGATATCTTTCACAGGAATCGAGATAAATTGGATCAAAGTTAAAAGCTAGGGGTCATTTAAATAATTTTTATGGTGGTTAATACATGAAACTCTTATCAAATCTCCAAATTTATGAGAATTTTATGAAAACTCAATAAAGCAAAAAACAATTTTTTAGAGAGTTAATCGTTCATCGATACTGTAACACCAATTGTTATCTTTAAATATGAAATAAAAGAGCCAAACTTGATCCAATTCATCTAGTTTCCTGTGAAAGATGTTATGAATCGATCAACTGACAAAGTGCTTTTGGTATTATGATAAACATTTTATCAGTTGACCACTTTTTTATATCTTTCATAGGAACCGAGATAGATTATGTCAAACTTGACTTTTATATTGAATTCAGAGAAGTTCGCATTTTTTCAGTTTYATCTGTTGTATAGGTTTTATAAGTTTGAATATCTTCTCATTGGAACTTTGAGTCAGAGTGGAGAAATATGAGATTTTTCAGAAAGTTTCAGATCCAATATTATCAAAAATGTTCTTGGCCACTTTTTGATATCTTTCAACACGGCCAAGAAAAATAAGGTCCTTGGATTCCCCTTATCATAATCTTCGACACTACCGCAACGTGGTGCACATAATCCGTTCCTCCTGACTTTGATCACTTTCTAGATGTTACTATTATTAACATCCAATGTGAAATATTGAAAACAAATATCTTATGATAGTCGTCGGATTAGTTCTTAATGCTTCTATTGTATATTTTTTGTAATAATCGTCAAATATCACCTAGACATTATGTGGCGTTGTTTTTAATAATAAAAGCAAAGCAAGCAGTCGATAACCAGGAACGGAAACGGAGCAATATTTTCTAGAATTTTCTAAGTTTGATGTTGACTCCTCGAAACATTGAAGTTTTGAAATAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTGTAACACCAATTGTTATCTTTA</pcr_primer_p1>
		<pcr_primer_p2>ACTCAAAGTTCCAATGAGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>TACTGTAACACCAATTGTTATCTTTAAATATGAAATAAAAGAGCCAAACTTGATCCAATTCATCTAGTTTCCTGTGAAAGATGTTATGAATCGATCAACTGACAAAGTGCTTTTGGTATTATGATAAACATTTTATCAGTTGACCACTTTTTTATATCTTTCATAGGAACCGAGATAGATTATGTCAAACTTGACTTTTATATTGAATTCAGAGAAGTTCGCATTTTTTCAGTTTTATCTGTTGTATAGGTTTTATAAGTTTGAATATCTTCTCATTGGAACTTTGAGT</canonical_amplicon>
		<polymorphic_amplicon>TACTGTAACACCAATTGTTATCTTTAAATATGAAATAAAAGAGCCAAACTTGATCCAATTCATCTAGTTTCCTGTGAAAGATGTTATGAATCGATCAACTGACAAAGTGCTTTTGGTATTATGATAAACATTTTATCAGTTGACCACTTTTTTATATCTTTCATAGGAACCGAGATAGATTATGTCAAACTTGACTTTTATATTGAATTCAGAGAAGTTCGCATTTTTTCAGTTTYATCTGTTGTATAGGTTTTATAAGTTTGAATATCTTCTCATTGGAACTTTGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7700</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>93629</contig_pos>
        <strand>+</strand>
        <context>ATCTTCGACA[C/T]TACCGCAACG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGCCAAGAAAAATAAGGTCCTTGGATTCCCCTTATCATAATCTTCGACA</left_flank>
        <right_flank>TACCGCAACGTGGTGCACATAATCCGTTCCTCCTGACTTTGATCACTTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAATTTATGAGAATTTTATGAAAACTCAATAAAGCAAAAAACAATTTTTTAGAGAGTTAATCGTTCATCGATACTGTAACACCAATTGTTATCTTTAAATATGAAATAAAAGAGCCAAACTTGATCCAATTCATCTAGTTTCCTGTGAAAGATGTTATGAATCGATCAACTGACAAAGTGCTTTTGGTATTATGATAAACATTTTATCAGTTGACCACTTTTTTATATCTTTCATAGGAACCGAGATAGATTATGTCAAACTTGACTTTTATATTGAATTCAGAGAAGTTCGCATTTTTTCAGTTTTATCTGTTGTATAGGTTTTATAAGTTTGAATATCTTCTCATTGGAACTTTGAGTCAGAGTGGAGAAATATGAGATTTTTCAGAAAGTTTCAGATCCAATATTATCAAAAATGTTCTTGGCCACTTTTTGATATCTTTCAACACGGCCAAGAAAAATAAGGTCCTTGGATTCCCCTTATCATAATCTTCGACACTACCGCAACGTGGTGCACATAATCCGTTCCTCCTGACTTTGATCACTTTCTAGATGTTACTATTATTAACATCCAATGTGAAATATTGAAAACAAATATCTTATGATAGTCGTCGGATTAGTTCTTAATGCTTCTATTGTATATTTTTTGTAATAATCGTCAAATATCACCTAGACATTATGTGGCGTTGTTTTTAATAATAAAAGCAAAGCAAGCAGTCGATAACCAGGAACGGAAACGGAGCAATATTTTCTAGAATTTTCTAAGTTTGATGTTGACTCCTCGAAACATTGAAGTTTTGAAATAGTTTCTTGATTTTTTTAATCACAAAACCAGAATTTCCGAGACACTAGCAAAACTGCAATATGAAGAGGGACAGTTTTCTTCTATTTTCTAAGTTCATGAAACCGAAAAAAATTATAAGCTAGTCAAAGCCTTCAGACGACACTTTGGTAAATCTGAAAAAAACGAAGCATTCTAAAATTTTGCTAAACTTATTG</canonical>
            <polymorphic>CAAATTTATGAGAATTTTATGAAAACTCAATAAAGCAAAAAACAATTTTTTAGAGAGTTAATCGTTCATCGATACTGTAACACCAATTGTTATCTTTAAATATGAAATAAAAGAGCCAAACTTGATCCAATTCATCTAGTTTCCTGTGAAAGATGTTATGAATCGATCAACTGACAAAGTGCTTTTGGTATTATGATAAACATTTTATCAGTTGACCACTTTTTTATATCTTTCATAGGAACCGAGATAGATTATGTCAAACTTGACTTTTATATTGAATTCAGAGAAGTTCGCATTTTTTCAGTTTTATCTGTTGTATAGGTTTTATAAGTTTGAATATCTTCTCATTGGAACTTTGAGTCAGAGTGGAGAAATATGAGATTTTTCAGAAAGTTTCAGATCCAATATTATCAAAAATGTTCTTGGCCACTTTTTGATATCTTTCAACACGGCCAAGAAAAATAAGGTCCTTGGATTCCCCTTATCATAATCTTCGACAYTACCGCAACGTGGTGCACATAATCCGTTCCTCCTGACTTTGATCACTTTCTAGATGTTACTATTATTAACATCCAATGTGAAATATTGAAAACAAATATCTTATGATAGTCGTCGGATTAGTTCTTAATGCTTCTATTGTATATTTTTTGTAATAATCGTCAAATATCACCTAGACATTATGTGGCGTTGTTTTTAATAATAAAAGCAAAGCAAGCAGTCGATAACCAGGAACGGAAACGGAGCAATATTTTCTAGAATTTTCTAAGTTTGATGTTGACTCCTCGAAACATTGAAGTTTTGAAATAGTTTCTTGATTTTTTTAATCACAAAACCAGAATTTCCGAGACACTAGCAAAACTGCAATATGAAGAGGGACAGTTTTCTTCTATTTTCTAAGTTCATGAAACCGAAAAAAATTATAAGCTAGTCAAAGCCTTCAGACGACACTTTGGTAAATCTGAAAAAAACGAAGCATTCTAAAATTTTGCTAAACTTATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>150 143 98 89 82 66 61 53 50 37 35 33 28 22 20 15 13 3 2</canonical_bands>
                <polymorphic_bands>150 143 98 89 82 66 63 61 53 37 35 33 28 22 20 15 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCTCATTGGAACTTTGAGTC</pcr_primer_p1>
		<pcr_primer_p2>TTCAATATTTCACATTGGATGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCTCATTGGAACTTTGAGTCAGAGTGGAGAAATATGAGATTTTTCAGAAAGTTTCAGATCCAATATTATCAAAAATGTTCTTGGCCACTTTTTGATATCTTTCAACACGGCCAAGAAAAATAAGGTCCTTGGATTCCCCTTATCATAATCTTCGACACTACCGCAACGTGGTGCACATAATCCGTTCCTCCTGACTTTGATCACTTTCTAGATGTTACTATTATTAACATCCAATGTGAAATATTGAA</canonical_amplicon>
		<polymorphic_amplicon>CTTCTCATTGGAACTTTGAGTCAGAGTGGAGAAATATGAGATTTTTCAGAAAGTTTCAGATCCAATATTATCAAAAATGTTCTTGGCCACTTTTTGATATCTTTCAACACGGCCAAGAAAAATAAGGTCCTTGGATTCCCCTTATCATAATCTTCGACAYTACCGCAACGTGGTGCACATAATCCGTTCCTCCTGACTTTGATCACTTTCTAGATGTTACTATTATTAACATCCAATGTGAAATATTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7701</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>93679</contig_pos>
        <strand>+</strand>
        <context>TGATCACTTT[A/C]TAGATGTTAC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTACCGCAACGTGGTGCACATAATCCGTTCCTCCTGACTTTGATCACTTT</left_flank>
        <right_flank>TAGATGTTACTATTATTAACATCCAATGTGAAATATTGAAAACAAATATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGAGAGTTAATCGTTCATCGATACTGTAACACCAATTGTTATCTTTAAATATGAAATAAAAGAGCCAAACTTGATCCAATTCATCTAGTTTCCTGTGAAAGATGTTATGAATCGATCAACTGACAAAGTGCTTTTGGTATTATGATAAACATTTTATCAGTTGACCACTTTTTTATATCTTTCATAGGAACCGAGATAGATTATGTCAAACTTGACTTTTATATTGAATTCAGAGAAGTTCGCATTTTTTCAGTTTTATCTGTTGTATAGGTTTTATAAGTTTGAATATCTTCTCATTGGAACTTTGAGTCAGAGTGGAGAAATATGAGATTTTTCAGAAAGTTTCAGATCCAATATTATCAAAAATGTTCTTGGCCACTTTTTGATATCTTTCAACACGGCCAAGAAAAATAAGGTCCTTGGATTCCCCTTATCATAATCTTCGACACTACCGCAACGTGGTGCACATAATCCGTTCCTCCTGACTTTGATCACTTTCTAGATGTTACTATTATTAACATCCAATGTGAAATATTGAAAACAAATATCTTATGATAGTCGTCGGATTAGTTCTTAATGCTTCTATTGTATATTTTTTGTAATAATCGTCAAATATCACCTAGACATTATGTGGCGTTGTTTTTAATAATAAAAGCAAAGCAAGCAGTCGATAACCAGGAACGGAAACGGAGCAATATTTTCTAGAATTTTCTAAGTTTGATGTTGACTCCTCGAAACATTGAAGTTTTGAAATAGTTTCTTGATTTTTTTAATCACAAAACCAGAATTTCCGAGACACTAGCAAAACTGCAATATGAAGAGGGACAGTTTTCTTCTATTTTCTAAGTTCATGAAACCGAAAAAAATTATAAGCTAGTCAAAGCCTTCAGACGACACTTTGGTAAATCTGAAAAAAACGAAGCATTCTAAAATTTTGCTAAACTTATTGATTTGAAAATCAAAAAAATATGTCTGTAAGAAAGAAGATGATTCAAAGCG</canonical>
            <polymorphic>TAGAGAGTTAATCGTTCATCGATACTGTAACACCAATTGTTATCTTTAAATATGAAATAAAAGAGCCAAACTTGATCCAATTCATCTAGTTTCCTGTGAAAGATGTTATGAATCGATCAACTGACAAAGTGCTTTTGGTATTATGATAAACATTTTATCAGTTGACCACTTTTTTATATCTTTCATAGGAACCGAGATAGATTATGTCAAACTTGACTTTTATATTGAATTCAGAGAAGTTCGCATTTTTTCAGTTTTATCTGTTGTATAGGTTTTATAAGTTTGAATATCTTCTCATTGGAACTTTGAGTCAGAGTGGAGAAATATGAGATTTTTCAGAAAGTTTCAGATCCAATATTATCAAAAATGTTCTTGGCCACTTTTTGATATCTTTCAACACGGCCAAGAAAAATAAGGTCCTTGGATTCCCCTTATCATAATCTTCGACACTACCGCAACGTGGTGCACATAATCCGTTCCTCCTGACTTTGATCACTTTMTAGATGTTACTATTATTAACATCCAATGTGAAATATTGAAAACAAATATCTTATGATAGTCGTCGGATTAGTTCTTAATGCTTCTATTGTATATTTTTTGTAATAATCGTCAAATATCACCTAGACATTATGTGGCGTTGTTTTTAATAATAAAAGCAAAGCAAGCAGTCGATAACCAGGAACGGAAACGGAGCAATATTTTCTAGAATTTTCTAAGTTTGATGTTGACTCCTCGAAACATTGAAGTTTTGAAATAGTTTCTTGATTTTTTTAATCACAAAACCAGAATTTCCGAGACACTAGCAAAACTGCAATATGAAGAGGGACAGTTTTCTTCTATTTTCTAAGTTCATGAAACCGAAAAAAATTATAAGCTAGTCAAAGCCTTCAGACGACACTTTGGTAAATCTGAAAAAAACGAAGCATTCTAAAATTTTGCTAAACTTATTGATTTGAAAATCAAAAAAATATGTCTGTAAGAAAGAAGATGATTCAAAGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>414 125 121 97 86 82 75</canonical_bands>
                <polymorphic_bands>535 125 97 86 82 75</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>482 203 149 90 58 18</canonical_bands>
                <polymorphic_bands>482 221 149 90 58</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 298 203</canonical_bands>
                <polymorphic_bands>702 298</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAATAAGGTCCTTGGATTC</pcr_primer_p1>
		<pcr_primer_p2>TATTATTAAAAACAACGCCACAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAAATAAGGTCCTTGGATTCCCCTTATCATAATCTTCGACACTACCGCAACGTGGTGCACATAATCCGTTCCTCCTGACTTTGATCACTTTCTAGATGTTACTATTATTAACATCCAATGTGAAATATTGAAAACAAATATCTTATGATAGTCGTCGGATTAGTTCTTAATGCTTCTATTGTATATTTTTTGTAATAATCGTCAAATATCACCTAGACATTATGTGGCGTTGTTTTTAATAATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAATAAGGTCCTTGGATTCCCCTTATCATAATCTTCGACACTACCGCAACGTGGTGCACATAATCCGTTCCTCCTGACTTTGATCACTTTMTAGATGTTACTATTATTAACATCCAATGTGAAATATTGAAAACAAATATCTTATGATAGTCGTCGGATTAGTTCTTAATGCTTCTATTGTATATTTTTTGTAATAATCGTCAAATATCACCTAGACATTATGTGGCGTTGTTTTTAATAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7702</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>97264</contig_pos>
        <strand>+</strand>
        <context>GGTCATGTTT[A/T]CTGGTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTT</left_flank>
        <right_flank>CTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGAT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAATGCATGCTCAGCAATGGTAGACTTTCAAACATCTTATGATATAATAGTAATTTCAATACGACTTACTATAGGATTAGCAATAAAAGTTAGAACAAATGCTTAACATCAACATGAAACAGTATTCATTTTTCTCTGAAATTCCAGATTCCGACGTGCTCGTTTGATGAGTTTCGACGGTGAAGCTCCTCAATACCTTCAACACTTGCTTCAGAATCTGAAACCGCGCTTCCGAAGATCTGTTTGATGCATTGCACTACACCAGAGAAGACGATGAACTACTAAATTATCTGAAATTATCTTTTTCATTTTCTTTTAAAACATTTGTGTGTTGTTCGTGACCTAATTCTTCTTCC</canonical>
            <polymorphic>GTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTWCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAATGCATGCTCAGCAATGGTAGACTTTCAAACATCTTATGATATAATAGTAATTTCAATACGACTTACTATAGGATTAGCAATAAAAGTTAGAACAAATGCTTAACATCAACATGAAACAGTATTCATTTTTCTCTGAAATTCCAGATTCCGACGTGCTCGTTTGATGAGTTTCGACGGTGAAGCTCCTCAATACCTTCAACACTTGCTTCAGAATCTGAAACCGCGCTTCCGAAGATCTGTTTGATGCATTGCACTACACCAGAGAAGACGATGAACTACTAAATTATCTGAAATTATCTTTTTCATTTTCTTTTAAAACATTTGTGTGTTGTTCGTGACCTAATTCTTCTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCAACTCGAGGACTAGAAATC</pcr_primer_p1>
		<pcr_primer_p2>AGATGTTTGAAAGTCTACCATTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAATGCATGCTCAGCAATGGTAGACTTTCAAACATCT</canonical_amplicon>
		<polymorphic_amplicon>ATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTWCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAATGCATGCTCAGCAATGGTAGACTTTCAAACATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7703</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>97239</contig_pos>
        <strand>+</strand>
        <context>TCCAACTTAT[G/T]TCGCTTTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTAT</left_flank>
        <right_flank>TCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAATGCATGCTCAGCAATGGTAGACTTTCAAACATCTTATGATATAATAGTAATTTCAATACGACTTACTATAGGATTAGCAATAAAAGTTAGAACAAATGCTTAACATCAACATGAAACAGTATTCATTTTTCTCTGAAATTCCAGATTCCGACGTGCTCGTTTGATGAGTTTCGACGGTGAAGCTCCTCAATACCTTCAACACTTGCTTCAGAATCTGAAACCGCGCTTCCGAAGATCTGTTTGATGCATTGCACTACACCAGAGAAGACGATGAACTACTAAATTATCTGAAATTATCTTTTTCATTTTCTTTTAAAACATTTGTGTG</canonical>
            <polymorphic>AGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATKTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAATGCATGCTCAGCAATGGTAGACTTTCAAACATCTTATGATATAATAGTAATTTCAATACGACTTACTATAGGATTAGCAATAAAAGTTAGAACAAATGCTTAACATCAACATGAAACAGTATTCATTTTTCTCTGAAATTCCAGATTCCGACGTGCTCGTTTGATGAGTTTCGACGGTGAAGCTCCTCAATACCTTCAACACTTGCTTCAGAATCTGAAACCGCGCTTCCGAAGATCTGTTTGATGCATTGCACTACACCAGAGAAGACGATGAACTACTAAATTATCTGAAATTATCTTTTTCATTTTCTTTTAAAACATTTGTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATCCGAGAATCGAATAAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATTCTTGAAACCGCATTAGAT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>AATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAAT</canonical_amplicon>
		<polymorphic_amplicon>AATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATKTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7704</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>97168</contig_pos>
        <strand></strand>
        <context>ARTCAAGGAA[A/G]TTCAAAGCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAA</left_flank>
        <right_flank>TTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAATGCATGCTCAGCAATGGTAGACTTTCAAACATCTTATGATATAATAGTAATTTCAATACGACTTACTATAGGATTAGCAATAAAAGTTAGAACAAATGCTTAACATCAACATGAAACAGTATTCATTTTTCTCTGAAATTCCAGATTCCGACGTGCTCGTTTGATGAGTTTCGACGGTGAAGCTCCTCAATACCTTCAACACTTGCTTCAGAATCTGAAACCGCGCTTCCGAAGATCTGTTTGATGCATTGCACTAC</canonical>
            <polymorphic>TGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAARTTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAATGCATGCTCAGCAATGGTAGACTTTCAAACATCTTATGATATAATAGTAATTTCAATACGACTTACTATAGGATTAGCAATAAAAGTTAGAACAAATGCTTAACATCAACATGAAACAGTATTCATTTTTCTCTGAAATTCCAGATTCCGACGTGCTCGTTTGATGAGTTTCGACGGTGAAGCTCCTCAATACCTTCAACACTTGCTTCAGAATCTGAAACCGCGCTTCCGAAGATCTGTTTGATGCATTGCACTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>176 155 153 121 114 93 71 44 31 21 13 8</canonical_bands>
                <polymorphic_bands>176 155 153 121 114 93 75 71 21 13 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>143 121 93 88 88 85 63 49 36 31 29 28 21 19 16 15 15 13 13 12 10 8 4</canonical_bands>
                <polymorphic_bands>143 121 93 88 88 85 63 49 47 36 29 28 21 19 15 15 13 13 12 10 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGTGGTATACGGTTGAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>GTTGGAAAAGGAAGATTTCTAGT</pcr_primer_p2>
		<pcr_amplicon_size>215</pcr_amplicon_size>
		<canonical_amplicon>CTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAAC</canonical_amplicon>
		<polymorphic_amplicon>CTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAARTTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7705</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>97153</contig_pos>
        <strand></strand>
        <context>CYRAAAAWAA[T/C]TAAAARTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAA</left_flank>
        <right_flank>TAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGAGTCTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAATGCATGCTCAGCAATGGTAGACTTTCAAACATCTTATGATATAATAGTAATTTCAATACGACTTACTATAGGATTAGCAATAAAAGTTAGAACAAATGCTTAACATCAACATGAAACAGTATTCATTTTTCTCTGAAATTCCAGATTCCGACGTGCTCGTTTGATGAGTTTCGACGGTGAAGCTCCTCAATACCTTCAACACTTGCTTCAGAATCTGAAACCGCGCTTCCGAAGATCTGTTT</canonical>
            <polymorphic>CGGAGTCTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAAYTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAATGCATGCTCAGCAATGGTAGACTTTCAAACATCTTATGATATAATAGTAATTTCAATACGACTTACTATAGGATTAGCAATAAAAGTTAGAACAAATGCTTAACATCAACATGAAACAGTATTCATTTTTCTCTGAAATTCCAGATTCCGACGTGCTCGTTTGATGAGTTTCGACGGTGAAGCTCCTCAATACCTTCAACACTTGCTTCAGAATCTGAAACCGCGCTTCCGAAGATCTGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>146 142 133 124 108 95 88 87 28 17 17 10 5</canonical_bands>
                <polymorphic_bands>211 146 142 133 108 95 88 28 17 17 10 5</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>143 106 93 88 88 85 78 49 36 31 29 28 21 19 16 15 15 13 13 12 10 8 4</canonical_bands>
                <polymorphic_bands>143 106 93 88 88 85 78 49 44 36 31 29 21 19 15 15 13 13 12 10 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGTGGTATACGGTTGAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>GTTGGAAAAGGAAGATTTCTAGT</pcr_primer_p2>
		<pcr_amplicon_size>215</pcr_amplicon_size>
		<canonical_amplicon>CTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAAC</canonical_amplicon>
		<polymorphic_amplicon>CTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAAYTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7709</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>97053</contig_pos>
        <strand>+</strand>
        <context>AGATTTCTAG[C/T]CGCTAACCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAG</left_flank>
        <right_flank>CGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTGGGTTCAGCAGTTCTACTGAAAAAATGCCACGTGTCAGCTCTCTGATTGTGTTTTTTACCTTCATGGTGACCCTTTTCGCTGTCAGTCATGCAGCCGGAGTCTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAATGCATGCTCAGCAATGGTAGACTTTCAAACATCTTATGATATAATAGTAATTTCAATACGACTTACTATAGGATTAGCAATAAAAGTTAGAACAAATGCTTAACATCAACATGAAACAGTATTCATTTTTCTCTGAAATTCC</canonical>
            <polymorphic>CAATTGGGTTCAGCAGTTCTACTGAAAAAATGCCACGTGTCAGCTCTCTGATTGTGTTTTTTACCTTCATGGTGACCCTTTTCGCTGTCAGTCATGCAGCCGGAGTCTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGYCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAATGCATGCTCAGCAATGGTAGACTTTCAAACATCTTATGATATAATAGTAATTTCAATACGACTTACTATAGGATTAGCAATAAAAGTTAGAACAAATGCTTAACATCAACATGAAACAGTATTCATTTTTCTCTGAAATTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGGTACAACACTACTGTACGAT</pcr_primer_p1>
		<pcr_primer_p2>TCTCGGATATTTGCTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>TGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGA</canonical_amplicon>
		<polymorphic_amplicon>TGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGYCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7710</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>96995</contig_pos>
        <strand></strand>
        <context>CATAAAACCA[G/T]AAAAAATCGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCA</left_flank>
        <right_flank>AAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTGTCACCATAGTTTACTATTCAAATAACCAATAGACTTTTTTACAGAGAGGCAATCAATTGGGTTCAGCAGTTCTACTGAAAAAATGCCACGTGTCAGCTCTCTGATTGTGTTTTTTACCTTCATGGTGACCCTTTTCGCTGTCAGTCATGCAGCCGGAGTCTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAATGCATGCTCAGCAATGGTAGACTTTCAAACATCTTATGATATAATAGTAATTTCAATACGACTTACTATAGGATTAGCAATAAA</canonical>
            <polymorphic>GCTTGTCACCATAGTTTACTATTCAAATAACCAATAGACTTTTTTACAGAGAGGCAATCAATTGGGTTCAGCAGTTCTACTGAAAAAATGCCACGTGTCAGCTCTCTGATTGTGTTTTTTACCTTCATGGTGACCCTTTTCGCTGTCAGTCATGCAGCCGGAGTCTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAKAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAATGCATGCTCAGCAATGGTAGACTTTCAAACATCTTATGATATAATAGTAATTTCAATACGACTTACTATAGGATTAGCAATAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTCTTTTGTTGTTTCAAGA</pcr_primer_p1>
		<pcr_primer_p2>AGAAATCTTTTCTTCAACCGTAT</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>AAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCT</canonical_amplicon>
		<polymorphic_amplicon>AAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAKAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7711</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>96962</contig_pos>
        <strand>+</strand>
        <context>CTGAATTTTT[A/T]ATGAAAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTT</left_flank>
        <right_flank>ATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGAAATTTCACCTTTTCTAATCATTCTAATCGCTTGTCACCATAGTTTACTATTCAAATAACCAATAGACTTTTTTACAGAGAGGCAATCAATTGGGTTCAGCAGTTCTACTGAAAAAATGCCACGTGTCAGCTCTCTGATTGTGTTTTTTACCTTCATGGTGACCCTTTTCGCTGTCAGTCATGCAGCCGGAGTCTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAATGCATGCTCAGCAATGGTAGACTTTCAAACATCTTATGATATAATAGTAAT</canonical>
            <polymorphic>TTCGAAATTTCACCTTTTCTAATCATTCTAATCGCTTGTCACCATAGTTTACTATTCAAATAACCAATAGACTTTTTTACAGAGAGGCAATCAATTGGGTTCAGCAGTTCTACTGAAAAAATGCCACGTGTCAGCTCTCTGATTGTGTTTTTTACCTTCATGGTGACCCTTTTCGCTGTCAGTCATGCAGCCGGAGTCTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTWATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAATGCATGCTCAGCAATGGTAGACTTTCAAACATCTTATGATATAATAGTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTCTTTTGTTGTTTCAAGA</pcr_primer_p1>
		<pcr_primer_p2>CAACCGTATACCACTAGGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTG</canonical_amplicon>
		<polymorphic_amplicon>AAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTWATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7712</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>96935</contig_pos>
        <strand>+</strand>
        <context>YAATTAAACT[A/C]AATTAATTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACT</left_flank>
        <right_flank>AATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCTCAATATTTCTGTTTTATTTACTTTCGAAATTTCACCTTTTCTAATCATTCTAATCGCTTGTCACCATAGTTTACTATTCAAATAACCAATAGACTTTTTTACAGAGAGGCAATCAATTGGGTTCAGCAGTTCTACTGAAAAAATGCCACGTGTCAGCTCTCTGATTGTGTTTTTTACCTTCATGGTGACCCTTTTCGCTGTCAGTCATGCAGCCGGAGTCTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAATGCATGCTCAGCAATGGTAGACTT</canonical>
            <polymorphic>CTTCTCAATATTTCTGTTTTATTTACTTTCGAAATTTCACCTTTTCTAATCATTCTAATCGCTTGTCACCATAGTTTACTATTCAAATAACCAATAGACTTTTTTACAGAGAGGCAATCAATTGGGTTCAGCAGTTCTACTGAAAAAATGCCACGTGTCAGCTCTCTGATTGTGTTTTTTACCTTCATGGTGACCCTTTTCGCTGTCAGTCATGCAGCCGGAGTCTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTMAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAATGCATGCTCAGCAATGGTAGACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTCTTTTGTTGTTTCAAGA</pcr_primer_p1>
		<pcr_primer_p2>CAACCGTATACCACTAGGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTG</canonical_amplicon>
		<polymorphic_amplicon>AAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTMAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7713</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>96925</contig_pos>
        <strand>+</strand>
        <context>TTAGTGCAAT[C/T]AATTAAACTM</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAAT</left_flank>
        <right_flank>AATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTCACCGACTTCTCAATATTTCTGTTTTATTTACTTTCGAAATTTCACCTTTTCTAATCATTCTAATCGCTTGTCACCATAGTTTACTATTCAAATAACCAATAGACTTTTTTACAGAGAGGCAATCAATTGGGTTCAGCAGTTCTACTGAAAAAATGCCACGTGTCAGCTCTCTGATTGTGTTTTTTACCTTCATGGTGACCCTTTTCGCTGTCAGTCATGCAGCCGGAGTCTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAATGCATGCTCAGCAA</canonical>
            <polymorphic>GCTTCACCGACTTCTCAATATTTCTGTTTTATTTACTTTCGAAATTTCACCTTTTCTAATCATTCTAATCGCTTGTCACCATAGTTTACTATTCAAATAACCAATAGACTTTTTTACAGAGAGGCAATCAATTGGGTTCAGCAGTTCTACTGAAAAAATGCCACGTGTCAGCTCTCTGATTGTGTTTTTTACCTTCATGGTGACCCTTTTCGCTGTCAGTCATGCAGCCGGAGTCTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATYAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAATGCATGCTCAGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTCTTTTGTTGTTTCAAGA</pcr_primer_p1>
		<pcr_primer_p2>CAACCGTATACCACTAGGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTG</canonical_amplicon>
		<polymorphic_amplicon>AAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATYAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7714</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>96912</contig_pos>
        <strand></strand>
        <context>GGTGTATGCT[T/C]AATTAGTGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCT</left_flank>
        <right_flank>AATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAATATGAGACTGCTTCACCGACTTCTCAATATTTCTGTTTTATTTACTTTCGAAATTTCACCTTTTCTAATCATTCTAATCGCTTGTCACCATAGTTTACTATTCAAATAACCAATAGACTTTTTTACAGAGAGGCAATCAATTGGGTTCAGCAGTTCTACTGAAAAAATGCCACGTGTCAGCTCTCTGATTGTGTTTTTTACCTTCATGGTGACCCTTTTCGCTGTCAGTCATGCAGCCGGAGTCTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAAT</canonical>
            <polymorphic>TTAATATGAGACTGCTTCACCGACTTCTCAATATTTCTGTTTTATTTACTTTCGAAATTTCACCTTTTCTAATCATTCTAATCGCTTGTCACCATAGTTTACTATTCAAATAACCAATAGACTTTTTTACAGAGAGGCAATCAATTGGGTTCAGCAGTTCTACTGAAAAAATGCCACGTGTCAGCTCTCTGATTGTGTTTTTTACCTTCATGGTGACCCTTTTCGCTGTCAGTCATGCAGCCGGAGTCTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTYAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>373 124 108 95 88 87 47 28 17 17 10 5 1</canonical_bands>
                <polymorphic_bands>373 124 108 95 88 87 47 34 28 10 5 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTCTTTTGTTGTTTCAAGA</pcr_primer_p1>
		<pcr_primer_p2>CAACCGTATACCACTAGGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTG</canonical_amplicon>
		<polymorphic_amplicon>AAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTYAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7715</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>96896</contig_pos>
        <strand></strand>
        <context>TTTWTGATTT[A/C]AAGGTGGTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTT</left_flank>
        <right_flank>AAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTCTTTCAGAGAATTTAATATGAGACTGCTTCACCGACTTCTCAATATTTCTGTTTTATTTACTTTCGAAATTTCACCTTTTCTAATCATTCTAATCGCTTGTCACCATAGTTTACTATTCAAATAACCAATAGACTTTTTTACAGAGAGGCAATCAATTGGGTTCAGCAGTTCTACTGAAAAAATGCCACGTGTCAGCTCTCTGATTGTGTTTTTTACCTTCATGGTGACCCTTTTCGCTGTCAGTCATGCAGCCGGAGTCTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTA</canonical>
            <polymorphic>GTTTCTTTCAGAGAATTTAATATGAGACTGCTTCACCGACTTCTCAATATTTCTGTTTTATTTACTTTCGAAATTTCACCTTTTCTAATCATTCTAATCGCTTGTCACCATAGTTTACTATTCAAATAACCAATAGACTTTTTTACAGAGAGGCAATCAATTGGGTTCAGCAGTTCTACTGAAAAAATGCCACGTGTCAGCTCTCTGATTGTGTTTTTTACCTTCATGGTGACCCTTTTCGCTGTCAGTCATGCAGCCGGAGTCTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTMAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>391 334 118 108 49</canonical_bands>
                <polymorphic_bands>391 334 157 118</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>373 124 108 95 88 87 31 28 17 17 17 10 5</canonical_bands>
                <polymorphic_bands>373 125 124 95 88 87 31 28 17 17 10 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTCTTTTGTTGTTTCAAGA</pcr_primer_p1>
		<pcr_primer_p2>CAACCGTATACCACTAGGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTG</canonical_amplicon>
		<polymorphic_amplicon>AAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTMAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7716</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>96889</contig_pos>
        <strand></strand>
        <context>AAAGGAATTT[A/T]TGATTTMAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTT</left_flank>
        <right_flank>TGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTTGCGTTTCTTTCAGAGAATTTAATATGAGACTGCTTCACCGACTTCTCAATATTTCTGTTTTATTTACTTTCGAAATTTCACCTTTTCTAATCATTCTAATCGCTTGTCACCATAGTTTACTATTCAAATAACCAATAGACTTTTTTACAGAGAGGCAATCAATTGGGTTCAGCAGTTCTACTGAAAAAATGCCACGTGTCAGCTCTCTGATTGTGTTTTTTACCTTCATGGTGACCCTTTTCGCTGTCAGTCATGCAGCCGGAGTCTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGA</canonical>
            <polymorphic>TGGTTGCGTTTCTTTCAGAGAATTTAATATGAGACTGCTTCACCGACTTCTCAATATTTCTGTTTTATTTACTTTCGAAATTTCACCTTTTCTAATCATTCTAATCGCTTGTCACCATAGTTTACTATTCAAATAACCAATAGACTTTTTTACAGAGAGGCAATCAATTGGGTTCAGCAGTTCTACTGAAAAAATGCCACGTGTCAGCTCTCTGATTGTGTTTTTTACCTTCATGGTGACCCTTTTCGCTGTCAGTCATGCAGCCGGAGTCTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTWTGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTCTTTTGTTGTTTCAAGA</pcr_primer_p1>
		<pcr_primer_p2>CAACCGTATACCACTAGGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTG</canonical_amplicon>
		<polymorphic_amplicon>AAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTWTGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7717</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>96843</contig_pos>
        <strand>+</strand>
        <context>GGCTTTGACA[A/G]CATTGGGTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACA</left_flank>
        <right_flank>CATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGAT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTCTCTTACAGAAATTGAGATATTTGAGTCTAAAATAGAAGTATTGGTTGCGTTTCTTTCAGAGAATTTAATATGAGACTGCTTCACCGACTTCTCAATATTTCTGTTTTATTTACTTTCGAAATTTCACCTTTTCTAATCATTCTAATCGCTTGTCACCATAGTTTACTATTCAAATAACCAATAGACTTTTTTACAGAGAGGCAATCAATTGGGTTCAGCAGTTCTACTGAAAAAATGCCACGTGTCAGCTCTCTGATTGTGTTTTTTACCTTCATGGTGACCCTTTTCGCTGTCAGTCATGCAGCCGGAGTCTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGA</canonical>
            <polymorphic>ATGTCTCTTACAGAAATTGAGATATTTGAGTCTAAAATAGAAGTATTGGTTGCGTTTCTTTCAGAGAATTTAATATGAGACTGCTTCACCGACTTCTCAATATTTCTGTTTTATTTACTTTCGAAATTTCACCTTTTCTAATCATTCTAATCGCTTGTCACCATAGTTTACTATTCAAATAACCAATAGACTTTTTTACAGAGAGGCAATCAATTGGGTTCAGCAGTTCTACTGAAAAAATGCCACGTGTCAGCTCTCTGATTGTGTTTTTTACCTTCATGGTGACCCTTTTCGCTGTCAGTCATGCAGCCGGAGTCTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACARCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTCTTTTGTTGTTTCAAGA</pcr_primer_p1>
		<pcr_primer_p2>CAACCGTATACCACTAGGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTG</canonical_amplicon>
		<polymorphic_amplicon>AAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACARCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7718</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>96822</contig_pos>
        <strand>+</strand>
        <context>AAGCCATTTT[C/T]GAGAACAGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTT</left_flank>
        <right_flank>GAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTATCGTTTATCAATTTTCGATGTCTCTTACAGAAATTGAGATATTTGAGTCTAAAATAGAAGTATTGGTTGCGTTTCTTTCAGAGAATTTAATATGAGACTGCTTCACCGACTTCTCAATATTTCTGTTTTATTTACTTTCGAAATTTCACCTTTTCTAATCATTCTAATCGCTTGTCACCATAGTTTACTATTCAAATAACCAATAGACTTTTTTACAGAGAGGCAATCAATTGGGTTCAGCAGTTCTACTGAAAAAATGCCACGTGTCAGCTCTCTGATTGTGTTTTTTACCTTCATGGTGACCCTTTTCGCTGTCAGTCATGCAGCCGGAGTCTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGAT</canonical>
            <polymorphic>GTTATCGTTTATCAATTTTCGATGTCTCTTACAGAAATTGAGATATTTGAGTCTAAAATAGAAGTATTGGTTGCGTTTCTTTCAGAGAATTTAATATGAGACTGCTTCACCGACTTCTCAATATTTCTGTTTTATTTACTTTCGAAATTTCACCTTTTCTAATCATTCTAATCGCTTGTCACCATAGTTTACTATTCAAATAACCAATAGACTTTTTTACAGAGAGGCAATCAATTGGGTTCAGCAGTTCTACTGAAAAAATGCCACGTGTCAGCTCTCTGATTGTGTTTTTTACCTTCATGGTGACCCTTTTCGCTGTCAGTCATGCAGCCGGAGTCTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTYGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>357 188 181 123 115 20 16</canonical_bands>
                <polymorphic_bands>538 188 123 115 20 16</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>500 485 15</canonical_bands>
                <polymorphic_bands>515 485</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGGAACAGTAAATTGAAAATA</pcr_primer_p1>
		<pcr_primer_p2>CAACCGTATACCACTAGGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>280</pcr_amplicon_size>
		<canonical_amplicon>GGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTG</canonical_amplicon>
		<polymorphic_amplicon>GGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTYGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7719</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>100236</contig_pos>
        <strand></strand>
        <context>TGATCGCCGG[T/A]GTTTGCAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGGCCTCTTCTTGTTTTGAAGTTTAGTTTGAACATTGGATTGATCGCCGG</left_flank>
        <right_flank>GTTTGCAAAATAAATAAAAAATCTTCACCTGAATCATGGAAGACGCTCTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAGTTCATTCTATTATTTTACATTTCCTCTCACTAGAATTCATTATTTATCCATTTGGAATCTGCTTATCATGTATTTTAATGTATTTTAATGTTTTTTTTCCTTTTTTTTCCACGATTCTTGCAATCGTAAATAAATAAATAAATAAGTAAATAAAATGTAATACTCATGCTAACTCTGAAACGGGATCCAAGATATTTTCCTGACATCCCCTACACTATCACTTTGAGCTCAAATATCTCAATTTCAGTAAGAGATATCAAAAGTCAGTCAATTGATAAAATGTTTGTTACTATATCACCAATATTTTATAGATTGGCGGCTTTTTTATATCTGCCACAGGAACCGATAGAATTGAGCTCAAAGTTGACAATTGGGTTGGTTTCTATTAAAGGAAATACAGTAACTGGCTCAAAGTAAAAGTCGTGAAATTTTTACAGTTTCCGTAAGGCCTCTTCTTGTTTTGAAGTTTAGTTTGAACATTGGATTGATCGCCGGTGTTTGCAAAATAAATAAAAAATCTTCACCTGAATCATGGAAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCCAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAA</canonical>
            <polymorphic>CTAGTTCATTCTATTATTTTACATTTCCTCTCACTAGAATTCATTATTTATCCATTTGGAATCTGCTTATCATGTATTTTAATGTATTTTAATGTTTTTTTTCCTTTTTTTTCCACGATTCTTGCAATCGTAAATAAATAAATAAATAAGTAAATAAAATGTAATACTCATGCTAACTCTGAAACGGGATCCAAGATATTTTCCTGACATCCCCTACACTATCACTTTGAGCTCAAATATCTCAATTTCAGTAAGAGATATCAAAAGTCAGTCAATTGATAAAATGTTTGTTACTATATCACCAATATTTTATAGATTGGCGGCTTTTTTATATCTGCCACAGGAACCGATAGAATTGAGCTCAAAGTTGACAATTGGGTTGGTTTCTATTAAAGGAAATACAGTAACTGGCTCAAAGTAAAAGTCGTGAAATTTTTACAGTTTCCGTAAGGCCTCTTCTTGTTTTGAAGTTTAGTTTGAACATTGGATTGATCGCCGGWGTTTGCAAAATAAATAAAAAATCTTCACCTGAATCATGGAAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCCAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>103 103 89 82 77 72 54 53 45 39 39 36 35 33 26 21 19 17 16 12 9 8 6 6</canonical_bands>
                <polymorphic_bands>103 103 98 89 82 77 54 53 45 39 39 36 35 33 21 19 17 16 12 9 8 6 6</polymorphic_bands>
            </assay>
            <assay>
                <site>CRCCGGYG</site>
                <isoschizomers>
                    <enzyme>SgrAI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGTAACTGGCTCAAAGTAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATATTATTGAAGCTCGTGAACCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACAGTAACTGGCTCAAAGTAAAAGTCGTGAAATTTTTACAGTTTCCGTAAGGCCTCTTCTTGTTTTGAAGTTTAGTTTGAACATTGGATTGATCGCCGGTGTTTGCAAAATAAATAAAAAATCTTCACCTGAATCATGGAAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATAT</canonical_amplicon>
		<polymorphic_amplicon>ACAGTAACTGGCTCAAAGTAAAAGTCGTGAAATTTTTACAGTTTCCGTAAGGCCTCTTCTTGTTTTGAAGTTTAGTTTGAACATTGGATTGATCGCCGGWGTTTGCAAAATAAATAAAAAATCTTCACCTGAATCATGGAAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7720</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>100343</contig_pos>
        <strand></strand>
        <context>CTTTTTCGTC[G/T]CGAAGCTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTC</left_flank>
        <right_flank>CGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTCCACGATTCTTGCAATCGTAAATAAATAAATAAATAAGTAAATAAAATGTAATACTCATGCTAACTCTGAAACGGGATCCAAGATATTTTCCTGACATCCCCTACACTATCACTTTGAGCTCAAATATCTCAATTTCAGTAAGAGATATCAAAAGTCAGTCAATTGATAAAATGTTTGTTACTATATCACCAATATTTTATAGATTGGCGGCTTTTTTATATCTGCCACAGGAACCGATAGAATTGAGCTCAAAGTTGACAATTGGGTTGGTTTCTATTAAAGGAAATACAGTAACTGGCTCAAAGTAAAAGTCGTGAAATTTTTACAGTTTCCGTAAGGCCTCTTCTTGTTTTGAAGTTTAGTTTGAACATTGGATTGATCGCCGGTGTTTGCAAAATAAATAAAAAATCTTCACCTGAATCATGGAAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCCAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGT</canonical>
            <polymorphic>TTTTTCCACGATTCTTGCAATCGTAAATAAATAAATAAATAAGTAAATAAAATGTAATACTCATGCTAACTCTGAAACGGGATCCAAGATATTTTCCTGACATCCCCTACACTATCACTTTGAGCTCAAATATCTCAATTTCAGTAAGAGATATCAAAAGTCAGTCAATTGATAAAATGTTTGTTACTATATCACCAATATTTTATAGATTGGCGGCTTTTTTATATCTGCCACAGGAACCGATAGAATTGAGCTCAAAGTTGACAATTGGGTTGGTTTCTATTAAAGGAAATACAGTAACTGGCTCAAAGTAAAAGTCGTGAAATTTTTACAGTTTCCGTAAGGCCTCTTCTTGTTTTGAAGTTTAGTTTGAACATTGGATTGATCGCCGGTGTTTGCAAAATAAATAAAAAATCTTCACCTGAATCATGGAAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCKCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCCAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 380 120</canonical_bands>
                <polymorphic_bands>620 380</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGCGA</site>
                <isoschizomers>
                    <enzyme>Bsp68I</enzyme>
                    <enzyme>NruI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAGTTTGAACATTGGATTGAT</pcr_primer_p1>
		<pcr_primer_p2>CCCATAACTCAATTAACAACAAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTAGTTTGAACATTGGATTGATCGCCGGTGTTTGCAAAATAAATAAAAAATCTTCACCTGAATCATGGAAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGG</canonical_amplicon>
		<polymorphic_amplicon>TTTAGTTTGAACATTGGATTGATCGCCGGTGTTTGCAAAATAAATAAAAAATCTTCACCTGAATCATGGAAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCKCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7721</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>100391</contig_pos>
        <strand></strand>
        <context>TAATATCGTA[A/G]TCTGGATCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTA</left_flank>
        <right_flank>TCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATGTAATACTCATGCTAACTCTGAAACGGGATCCAAGATATTTTCCTGACATCCCCTACACTATCACTTTGAGCTCAAATATCTCAATTTCAGTAAGAGATATCAAAAGTCAGTCAATTGATAAAATGTTTGTTACTATATCACCAATATTTTATAGATTGGCGGCTTTTTTATATCTGCCACAGGAACCGATAGAATTGAGCTCAAAGTTGACAATTGGGTTGGTTTCTATTAAAGGAAATACAGTAACTGGCTCAAAGTAAAAGTCGTGAAATTTTTACAGTTTCCGTAAGGCCTCTTCTTGTTTTGAAGTTTAGTTTGAACATTGGATTGATCGCCGGTGTTTGCAAAATAAATAAAAAATCTTCACCTGAATCATGGAAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCCAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATAT</canonical>
            <polymorphic>AAAATGTAATACTCATGCTAACTCTGAAACGGGATCCAAGATATTTTCCTGACATCCCCTACACTATCACTTTGAGCTCAAATATCTCAATTTCAGTAAGAGATATCAAAAGTCAGTCAATTGATAAAATGTTTGTTACTATATCACCAATATTTTATAGATTGGCGGCTTTTTTATATCTGCCACAGGAACCGATAGAATTGAGCTCAAAGTTGACAATTGGGTTGGTTTCTATTAAAGGAAATACAGTAACTGGCTCAAAGTAAAAGTCGTGAAATTTTTACAGTTTCCGTAAGGCCTCTTCTTGTTTTGAAGTTTAGTTTGAACATTGGATTGATCGCCGGTGTTTGCAAAATAAATAAAAAATCTTCACCTGAATCATGGAAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTARTCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCCAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAGTTTGAACATTGGATTGAT</pcr_primer_p1>
		<pcr_primer_p2>CCCATAACTCAATTAACAACAAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTAGTTTGAACATTGGATTGATCGCCGGTGTTTGCAAAATAAATAAAAAATCTTCACCTGAATCATGGAAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGG</canonical_amplicon>
		<polymorphic_amplicon>TTTAGTTTGAACATTGGATTGATCGCCGGTGTTTGCAAAATAAATAAAAAATCTTCACCTGAATCATGGAAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTARTCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7722</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>100406</contig_pos>
        <strand>+</strand>
        <context>GATCTATATG[A/G]TTYCTTCCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATG</left_flank>
        <right_flank>TTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTAACTCTGAAACGGGATCCAAGATATTTTCCTGACATCCCCTACACTATCACTTTGAGCTCAAATATCTCAATTTCAGTAAGAGATATCAAAAGTCAGTCAATTGATAAAATGTTTGTTACTATATCACCAATATTTTATAGATTGGCGGCTTTTTTATATCTGCCACAGGAACCGATAGAATTGAGCTCAAAGTTGACAATTGGGTTGGTTTCTATTAAAGGAAATACAGTAACTGGCTCAAAGTAAAAGTCGTGAAATTTTTACAGTTTCCGTAAGGCCTCTTCTTGTTTTGAAGTTTAGTTTGAACATTGGATTGATCGCCGGTGTTTGCAAAATAAATAAAAAATCTTCACCTGAATCATGGAAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCCAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAA</canonical>
            <polymorphic>TGCTAACTCTGAAACGGGATCCAAGATATTTTCCTGACATCCCCTACACTATCACTTTGAGCTCAAATATCTCAATTTCAGTAAGAGATATCAAAAGTCAGTCAATTGATAAAATGTTTGTTACTATATCACCAATATTTTATAGATTGGCGGCTTTTTTATATCTGCCACAGGAACCGATAGAATTGAGCTCAAAGTTGACAATTGGGTTGGTTTCTATTAAAGGAAATACAGTAACTGGCTCAAAGTAAAAGTCGTGAAATTTTTACAGTTTCCGTAAGGCCTCTTCTTGTTTTGAAGTTTAGTTTGAACATTGGATTGATCGCCGGTGTTTGCAAAATAAATAAAAAATCTTCACCTGAATCATGGAAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGRTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCCAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGACGCTCTCATTTCATCTC</pcr_primer_p1>
		<pcr_primer_p2>TTCAAATTTTCAGGTGTTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAA</canonical_amplicon>
		<polymorphic_amplicon>AAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGRTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7723</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>100409</contig_pos>
        <strand>+</strand>
        <context>CTATATGRTT[C/T]CTTCCACTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTT</left_flank>
        <right_flank>CTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACTCTGAAACGGGATCCAAGATATTTTCCTGACATCCCCTACACTATCACTTTGAGCTCAAATATCTCAATTTCAGTAAGAGATATCAAAAGTCAGTCAATTGATAAAATGTTTGTTACTATATCACCAATATTTTATAGATTGGCGGCTTTTTTATATCTGCCACAGGAACCGATAGAATTGAGCTCAAAGTTGACAATTGGGTTGGTTTCTATTAAAGGAAATACAGTAACTGGCTCAAAGTAAAAGTCGTGAAATTTTTACAGTTTCCGTAAGGCCTCTTCTTGTTTTGAAGTTTAGTTTGAACATTGGATTGATCGCCGGTGTTTGCAAAATAAATAAAAAATCTTCACCTGAATCATGGAAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCCAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGT</canonical>
            <polymorphic>TAACTCTGAAACGGGATCCAAGATATTTTCCTGACATCCCCTACACTATCACTTTGAGCTCAAATATCTCAATTTCAGTAAGAGATATCAAAAGTCAGTCAATTGATAAAATGTTTGTTACTATATCACCAATATTTTATAGATTGGCGGCTTTTTTATATCTGCCACAGGAACCGATAGAATTGAGCTCAAAGTTGACAATTGGGTTGGTTTCTATTAAAGGAAATACAGTAACTGGCTCAAAGTAAAAGTCGTGAAATTTTTACAGTTTCCGTAAGGCCTCTTCTTGTTTTGAAGTTTAGTTTGAACATTGGATTGATCGCCGGTGTTTGCAAAATAAATAAAAAATCTTCACCTGAATCATGGAAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTYCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCCAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGACGCTCTCATTTCATCTC</pcr_primer_p1>
		<pcr_primer_p2>TTCAAATTTTCAGGTGTTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAA</canonical_amplicon>
		<polymorphic_amplicon>AAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTYCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7724</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>100471</contig_pos>
        <strand>+</strand>
        <context>GCGCGGTGTT[C/T]GAAATAGGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTT</left_flank>
        <right_flank>GAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATCTCAATTTCAGTAAGAGATATCAAAAGTCAGTCAATTGATAAAATGTTTGTTACTATATCACCAATATTTTATAGATTGGCGGCTTTTTTATATCTGCCACAGGAACCGATAGAATTGAGCTCAAAGTTGACAATTGGGTTGGTTTCTATTAAAGGAAATACAGTAACTGGCTCAAAGTAAAAGTCGTGAAATTTTTACAGTTTCCGTAAGGCCTCTTCTTGTTTTGAAGTTTAGTTTGAACATTGGATTGATCGCCGGTGTTTGCAAAATAAATAAAAAATCTTCACCTGAATCATGGAAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCCAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAG</canonical>
            <polymorphic>AATATCTCAATTTCAGTAAGAGATATCAAAAGTCAGTCAATTGATAAAATGTTTGTTACTATATCACCAATATTTTATAGATTGGCGGCTTTTTTATATCTGCCACAGGAACCGATAGAATTGAGCTCAAAGTTGACAATTGGGTTGGTTTCTATTAAAGGAAATACAGTAACTGGCTCAAAGTAAAAGTCGTGAAATTTTTACAGTTTCCGTAAGGCCTCTTCTTGTTTTGAAGTTTAGTTTGAACATTGGATTGATCGCCGGTGTTTGCAAAATAAATAAAAAATCTTCACCTGAATCATGGAAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTYGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCCAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCACTGGTTTTTAGAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTAAAAACTGCAATTCTACACAA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAA</canonical_amplicon>
		<polymorphic_amplicon>TTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTYGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7725</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>100527</contig_pos>
        <strand>+</strand>
        <context>AAATTTGAAT[G/T]GTGGGAATAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAAT</left_flank>
        <right_flank>GTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACA</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTATATCACCAATATTTTATAGATTGGCGGCTTTTTTATATCTGCCACAGGAACCGATAGAATTGAGCTCAAAGTTGACAATTGGGTTGGTTTCTATTAAAGGAAATACAGTAACTGGCTCAAAGTAAAAGTCGTGAAATTTTTACAGTTTCCGTAAGGCCTCTTCTTGTTTTGAAGTTTAGTTTGAACATTGGATTGATCGCCGGTGTTTGCAAAATAAATAAAAAATCTTCACCTGAATCATGGAAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCCAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCCTCATGTTAGCATCTATCC</canonical>
            <polymorphic>TACTATATCACCAATATTTTATAGATTGGCGGCTTTTTTATATCTGCCACAGGAACCGATAGAATTGAGCTCAAAGTTGACAATTGGGTTGGTTTCTATTAAAGGAAATACAGTAACTGGCTCAAAGTAAAAGTCGTGAAATTTTTACAGTTTCCGTAAGGCCTCTTCTTGTTTTGAAGTTTAGTTTGAACATTGGATTGATCGCCGGTGTTTGCAAAATAAATAAAAAATCTTCACCTGAATCATGGAAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATKGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCCAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCCTCATGTTAGCATCTATCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>278 170 105 102 82 73 62 58 34 19 11 6</canonical_bands>
                <polymorphic_bands>278 170 108 105 82 73 62 58 34 19 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCACTGGTTTTTAGAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTAAAAACTGCAATTCTACACAA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAA</canonical_amplicon>
		<polymorphic_amplicon>TTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATKGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7726</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>102222</contig_pos>
        <strand></strand>
        <context>GCTTTTGAAG[A/C]GACTAAAACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTTCTAGAAGGTTCTAGAAAGGTTTTAGACCAATAAATTGCTTTTGAAG</left_flank>
        <right_flank>GACTAAAACGCGCCGAAGGCGCGCCAACAAACCTACTTATGATTTGTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGACTAAAAATAGTTTGCGAATGTTCTTCTCCTCGAGGTGGTCACTTTTCTGGCCAATCAGGGTGATTAAAAAAAGCAAAGAATGCAGAAAATATCACGAGACGAAGAACCGGTAATACAAGCAATAGGGGGATGATCAGAAGGAAGATATCAACAACTTTTCAAAGTCGATTCTCTCTCTTCCCTTATATACGGTAGCCAGAGAGATCAGATGACGCAGAGAAATTGGTTGATGGGTGCGTCCTTCGGTTTTCTGGTATTTTGATTTTCAGACAAGACAAAATACGATTCCGAGAGAAAAGAGAAAGTGGTCAATGGTGGGTACTTTGATCAAGAGGTTATAGTGTTATTTGTGTATTTTTTAGAGATCAAAGGGTTCACGAATAGTGATTACACTATTTGATCCCATGGGATGGATCAGGGGATAGTTTCATGGTGGTCTATAGTGTTTCTAGAAGGTTCTAGAAAGGTTTTAGACCAATAAATTGCTTTTGAAGAGACTAAAACGCGCCGAAGGCGCGCCAACAAACCTACTTATGATTTGTTTTTAATTGTTAATATTTACTGTTTCAAAGGCATATTTTGTCATCCAGAAAGTTTACATTTTAATGCGAAATTTTTTCGAATTTCTTTCTTTTTGTTTTCCTAATAACTGAATGTTTTATCACTTTACTTCCGTTTTACAAAGTTGTACAAAAAGAAATCGATCTATCGAACTTTTCTTCTTTTTATCTTCTGTCATTGAATTGATTTTTCTCACTATCAGGTGAGAGATACATAGGCCAAAAATAGGTTGAGTACAAAATATTACAAACATTAAGAATCAGAAATTCGAATGATAATGGGTCTATTAATCTTATGGAGTGAAAAGTGGATTTCGAAATACTGTTTCATGACTCGAGAGTTTACTATTTTTCACTGAAAACAAATGAGAAAAGATATATAATTTGTCCACTGAACATCTTAAAATATGATATACCTGTTGGACCACCAAGCAA</canonical>
            <polymorphic>TCAGACTAAAAATAGTTTGCGAATGTTCTTCTCCTCGAGGTGGTCACTTTTCTGGCCAATCAGGGTGATTAAAAAAAGCAAAGAATGCAGAAAATATCACGAGACGAAGAACCGGTAATACAAGCAATAGGGGGATGATCAGAAGGAAGATATCAACAACTTTTCAAAGTCGATTCTCTCTCTTCCCTTATATACGGTAGCCAGAGAGATCAGATGACGCAGAGAAATTGGTTGATGGGTGCGTCCTTCGGTTTTCTGGTATTTTGATTTTCAGACAAGACAAAATACGATTCCGAGAGAAAAGAGAAAGTGGTCAATGGTGGGTACTTTGATCAAGAGGTTATAGTGTTATTTGTGTATTTTTTAGAGATCAAAGGGTTCACGAATAGTGATTACACTATTTGATCCCATGGGATGGATCAGGGGATAGTTTCATGGTGGTCTATAGTGTTTCTAGAAGGTTCTAGAAAGGTTTTAGACCAATAAATTGCTTTTGAAGMGACTAAAACGCGCCGAAGGCGCGCCAACAAACCTACTTATGATTTGTTTTTAATTGTTAATATTTACTGTTTCAAAGGCATATTTTGTCATCCAGAAAGTTTACATTTTAATGCGAAATTTTTTCGAATTTCTTTCTTTTTGTTTTCCTAATAACTGAATGTTTTATCACTTTACTTCCGTTTTACAAAGTTGTACAAAAAGAAATCGATCTATCGAACTTTTCTTCTTTTTATCTTCTGTCATTGAATTGATTTTTCTCACTATCAGGTGAGAGATACATAGGCCAAAAATAGGTTGAGTACAAAATATTACAAACATTAAGAATCAGAAATTCGAATGATAATGGGTCTATTAATCTTATGGAGTGAAAAGTGGATTTCGAAATACTGTTTCATGACTCGAGAGTTTACTATTTTTCACTGAAAACAAATGAGAAAAGATATATAATTTGTCCACTGAACATCTTAAAATATGATATACCTGTTGGACCACCAAGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATGGTGGTCTATAGTGTTTCT</pcr_primer_p1>
		<pcr_primer_p2>AACGGAAGTAAAGTGATAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCATGGTGGTCTATAGTGTTTCTAGAAGGTTCTAGAAAGGTTTTAGACCAATAAATTGCTTTTGAAGAGACTAAAACGCGCCGAAGGCGCGCCAACAAACCTACTTATGATTTGTTTTTAATTGTTAATATTTACTGTTTCAAAGGCATATTTTGTCATCCAGAAAGTTTACATTTTAATGCGAAATTTTTTCGAATTTCTTTCTTTTTGTTTTCCTAATAACTGAATGTTTTATCACTTTACTTCCGTT</canonical_amplicon>
		<polymorphic_amplicon>TCATGGTGGTCTATAGTGTTTCTAGAAGGTTCTAGAAAGGTTTTAGACCAATAAATTGCTTTTGAAGMGACTAAAACGCGCCGAAGGCGCGCCAACAAACCTACTTATGATTTGTTTTTAATTGTTAATATTTACTGTTTCAAAGGCATATTTTGTCATCCAGAAAGTTTACATTTTAATGCGAAATTTTTTCGAATTTCTTTCTTTTTGTTTTCCTAATAACTGAATGTTTTATCACTTTACTTCCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7729</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>102140</contig_pos>
        <strand></strand>
        <context>CCATGGGATG[G/A]ATCAGGGGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGATCAAAGGGTTCACGAATAGTGATTACACTATTTGATCCCATGGGATG</left_flank>
        <right_flank>ATCAGGGGATAGTTTCATGGTGGTCTATAGTGTTTCTAGAAGGTTCTAGA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGAACTCACCGATAATTAACAAGACGATCAAGTGGAAGGCAATAACAAAAATAGAATTCCGCAACATTTTCAGATTGTTTTTCAGACTAAAAATAGTTTGCGAATGTTCTTCTCCTCGAGGTGGTCACTTTTCTGGCCAATCAGGGTGATTAAAAAAAGCAAAGAATGCAGAAAATATCACGAGACGAAGAACCGGTAATACAAGCAATAGGGGGATGATCAGAAGGAAGATATCAACAACTTTTCAAAGTCGATTCTCTCTCTTCCCTTATATACGGTAGCCAGAGAGATCAGATGACGCAGAGAAATTGGTTGATGGGTGCGTCCTTCGGTTTTCTGGTATTTTGATTTTCAGACAAGACAAAATACGATTCCGAGAGAAAAGAGAAAGTGGTCAATGGTGGGTACTTTGATCAAGAGGTTATAGTGTTATTTGTGTATTTTTTAGAGATCAAAGGGTTCACGAATAGTGATTACACTATTTGATCCCATGGGATGGATCAGGGGATAGTTTCATGGTGGTCTATAGTGTTTCTAGAAGGTTCTAGAAAGGTTTTAGACCAATAAATTGCTTTTGAAGAGACTAAAACGCGCCGAAGGCGCGCCAACAAACCTACTTATGATTTGTTTTTAATTGTTAATATTTACTGTTTCAAAGGCATATTTTGTCATCCAGAAAGTTTACATTTTAATGCGAAATTTTTTCGAATTTCTTTCTTTTTGTTTTCCTAATAACTGAATGTTTTATCACTTTACTTCCGTTTTACAAAGTTGTACAAAAAGAAATCGATCTATCGAACTTTTCTTCTTTTTATCTTCTGTCATTGAATTGATTTTTCTCACTATCAGGTGAGAGATACATAGGCCAAAAATAGGTTGAGTACAAAATATTACAAACATTAAGAATCAGAAATTCGAATGATAATGGGTCTATTAATCTTATGGAGTGAAAAGTGGATTTCGAAATACTGTTTCATGACTCGAGAGTTTACTATTTTT</canonical>
            <polymorphic>CCGAACTCACCGATAATTAACAAGACGATCAAGTGGAAGGCAATAACAAAAATAGAATTCCGCAACATTTTCAGATTGTTTTTCAGACTAAAAATAGTTTGCGAATGTTCTTCTCCTCGAGGTGGTCACTTTTCTGGCCAATCAGGGTGATTAAAAAAAGCAAAGAATGCAGAAAATATCACGAGACGAAGAACCGGTAATACAAGCAATAGGGGGATGATCAGAAGGAAGATATCAACAACTTTTCAAAGTCGATTCTCTCTCTTCCCTTATATACGGTAGCCAGAGAGATCAGATGACGCAGAGAAATTGGTTGATGGGTGCGTCCTTCGGTTTTCTGGTATTTTGATTTTCAGACAAGACAAAATACGATTCCGAGAGAAAAGAGAAAGTGGTCAATGGTGGGTACTTTGATCAAGAGGTTATAGTGTTATTTGTGTATTTTTTAGAGATCAAAGGGTTCACGAATAGTGATTACACTATTTGATCCCATGGGATGRATCAGGGGATAGTTTCATGGTGGTCTATAGTGTTTCTAGAAGGTTCTAGAAAGGTTTTAGACCAATAAATTGCTTTTGAAGAGACTAAAACGCGCCGAAGGCGCGCCAACAAACCTACTTATGATTTGTTTTTAATTGTTAATATTTACTGTTTCAAAGGCATATTTTGTCATCCAGAAAGTTTACATTTTAATGCGAAATTTTTTCGAATTTCTTTCTTTTTGTTTTCCTAATAACTGAATGTTTTATCACTTTACTTCCGTTTTACAAAGTTGTACAAAAAGAAATCGATCTATCGAACTTTTCTTCTTTTTATCTTCTGTCATTGAATTGATTTTTCTCACTATCAGGTGAGAGATACATAGGCCAAAAATAGGTTGAGTACAAAATATTACAAACATTAAGAATCAGAAATTCGAATGATAATGGGTCTATTAATCTTATGGAGTGAAAAGTGGATTTCGAAATACTGTTTCATGACTCGAGAGTTTACTATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNTGG</site>
                <isoschizomers>
                    <enzyme>AccB7I</enzyme>
                    <enzyme>PflBI</enzyme>
                    <enzyme>PflMI</enzyme>
                    <enzyme>Van91I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>290 211 192 123 71 38 35 26 14</canonical_bands>
                <polymorphic_bands>304 211 192 123 71 38 35 26</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>377 375 127 121</canonical_bands>
                <polymorphic_bands>752 127 121</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCTGGTATTTTGATTTTCA</pcr_primer_p1>
		<pcr_primer_p2>CAAAAGCAATTTATTGGTCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCTGGTATTTTGATTTTCAGACAAGACAAAATACGATTCCGAGAGAAAAGAGAAAGTGGTCAATGGTGGGTACTTTGATCAAGAGGTTATAGTGTTATTTGTGTATTTTTTAGAGATCAAAGGGTTCACGAATAGTGATTACACTATTTGATCCCATGGGATGGATCAGGGGATAGTTTCATGGTGGTCTATAGTGTTTCTAGAAGGTTCTAGAAAGGTTTTAGACCAATAAATTGCTTTTG</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCTGGTATTTTGATTTTCAGACAAGACAAAATACGATTCCGAGAGAAAAGAGAAAGTGGTCAATGGTGGGTACTTTGATCAAGAGGTTATAGTGTTATTTGTGTATTTTTTAGAGATCAAAGGGTTCACGAATAGTGATTACACTATTTGATCCCATGGGATGRATCAGGGGATAGTTTCATGGTGGTCTATAGTGTTTCTAGAAGGTTCTAGAAAGGTTTTAGACCAATAAATTGCTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7730</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>101935</contig_pos>
        <strand></strand>
        <context>AGAGAGATCA[G/A]ATGACGCAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTCAAAGTCGATTCTCTCTCTTCCCTTATATACGGTAGCCAGAGAGATCA</left_flank>
        <right_flank>ATGACGCAGAGAAATTGGTTGATGGGTGCGTCCTTCGGTTTTCTGGTATT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCATTTGGCAATCCCAGTTTCTTTACTTTGAATTAACAGAATTTGATAAATCAGGGTATTTTGATCGTCCTGACCAATCTGGACTTATTAAACTGGAATATAAGTTCAAACATTCAAAAACTGTCTGTAACAGCATTTTTATGTTCTTTTTTACTAAACCGGCAAAAAAATTAAGCATTCGGAGTTTACGGTAATAGATAAATCCGAACTCACCGATAATTAACAAGACGATCAAGTGGAAGGCAATAACAAAAATAGAATTCCGCAACATTTTCAGATTGTTTTTCAGACTAAAAATAGTTTGCGAATGTTCTTCTCCTCGAGGTGGTCACTTTTCTGGCCAATCAGGGTGATTAAAAAAAGCAAAGAATGCAGAAAATATCACGAGACGAAGAACCGGTAATACAAGCAATAGGGGGATGATCAGAAGGAAGATATCAACAACTTTTCAAAGTCGATTCTCTCTCTTCCCTTATATACGGTAGCCAGAGAGATCAGATGACGCAGAGAAATTGGTTGATGGGTGCGTCCTTCGGTTTTCTGGTATTTTGATTTTCAGACAAGACAAAATACGATTCCGAGAGAAAAGAGAAAGTGGTCAATGGTGGGTACTTTGATCAAGAGGTTATAGTGTTATTTGTGTATTTTTTAGAGATCAAAGGGTTCACGAATAGTGATTACACTATTTGATCCCATGGGATGGATCAGGGGATAGTTTCATGGTGGTCTATAGTGTTTCTAGAAGGTTCTAGAAAGGTTTTAGACCAATAAATTGCTTTTGAAGAGACTAAAACGCGCCGAAGGCGCGCCAACAAACCTACTTATGATTTGTTTTTAATTGTTAATATTTACTGTTTCAAAGGCATATTTTGTCATCCAGAAAGTTTACATTTTAATGCGAAATTTTTTCGAATTTCTTTCTTTTTGTTTTCCTAATAACTGAATGTTTTATCACTTTACTTCCGTTTTACAAAGTTGTACAAAAAGAAATCGATCTA</canonical>
            <polymorphic>AACCATTTGGCAATCCCAGTTTCTTTACTTTGAATTAACAGAATTTGATAAATCAGGGTATTTTGATCGTCCTGACCAATCTGGACTTATTAAACTGGAATATAAGTTCAAACATTCAAAAACTGTCTGTAACAGCATTTTTATGTTCTTTTTTACTAAACCGGCAAAAAAATTAAGCATTCGGAGTTTACGGTAATAGATAAATCCGAACTCACCGATAATTAACAAGACGATCAAGTGGAAGGCAATAACAAAAATAGAATTCCGCAACATTTTCAGATTGTTTTTCAGACTAAAAATAGTTTGCGAATGTTCTTCTCCTCGAGGTGGTCACTTTTCTGGCCAATCAGGGTGATTAAAAAAAGCAAAGAATGCAGAAAATATCACGAGACGAAGAACCGGTAATACAAGCAATAGGGGGATGATCAGAAGGAAGATATCAACAACTTTTCAAAGTCGATTCTCTCTCTTCCCTTATATACGGTAGCCAGAGAGATCARATGACGCAGAGAAATTGGTTGATGGGTGCGTCCTTCGGTTTTCTGGTATTTTGATTTTCAGACAAGACAAAATACGATTCCGAGAGAAAAGAGAAAGTGGTCAATGGTGGGTACTTTGATCAAGAGGTTATAGTGTTATTTGTGTATTTTTTAGAGATCAAAGGGTTCACGAATAGTGATTACACTATTTGATCCCATGGGATGGATCAGGGGATAGTTTCATGGTGGTCTATAGTGTTTCTAGAAGGTTCTAGAAAGGTTTTAGACCAATAAATTGCTTTTGAAGAGACTAAAACGCGCCGAAGGCGCGCCAACAAACCTACTTATGATTTGTTTTTAATTGTTAATATTTACTGTTTCAAAGGCATATTTTGTCATCCAGAAAGTTTACATTTTAATGCGAAATTTTTTCGAATTTCTTTCTTTTTGTTTTCCTAATAACTGAATGTTTTATCACTTTACTTCCGTTTTACAAAGTTGTACAAAAAGAAATCGATCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>419 183 138 71 71 61 24 21 12</canonical_bands>
                <polymorphic_bands>419 183 138 132 71 24 21 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATGATCAGAAGGAAGATATCAA</pcr_primer_p1>
		<pcr_primer_p2>GTGAACCCTTTGATCTCTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATGATCAGAAGGAAGATATCAACAACTTTTCAAAGTCGATTCTCTCTCTTCCCTTATATACGGTAGCCAGAGAGATCAGATGACGCAGAGAAATTGGTTGATGGGTGCGTCCTTCGGTTTTCTGGTATTTTGATTTTCAGACAAGACAAAATACGATTCCGAGAGAAAAGAGAAAGTGGTCAATGGTGGGTACTTTGATCAAGAGGTTATAGTGTTATTTGTGTATTTTTTAGAGATCAAAGGGTTCAC</canonical_amplicon>
		<polymorphic_amplicon>GATGATCAGAAGGAAGATATCAACAACTTTTCAAAGTCGATTCTCTCTCTTCCCTTATATACGGTAGCCAGAGAGATCARATGACGCAGAGAAATTGGTTGATGGGTGCGTCCTTCGGTTTTCTGGTATTTTGATTTTCAGACAAGACAAAATACGATTCCGAGAGAAAAGAGAAAGTGGTCAATGGTGGGTACTTTGATCAAGAGGTTATAGTGTTATTTGTGTATTTTTTAGAGATCAAAGGGTTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7731</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>127688</contig_pos>
        <strand>+</strand>
        <context>GTCCGTTTTG[G/T]GTCTGAACTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCGAATTAATTATTCTTAAACGATTGGTTGAGTACCGCAGTCCGTTTTG</left_flank>
        <right_flank>GTCTGAACTGGCAGGAAGTCCTCCTTTGAACGAGTCGTCTTCATTGTGGG</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGTCAGGTAAAAAACGTAAAATACCACTGTCGGCCACTTGAAAAAACGGCTGTCAGGCGCCGTGACCTAGGTTTCTCACTGCGCGTGAATTCAAATCCTCGTCCCTCCTAGCAACTTTTTTTTTGAAATTTTTTCGCTTTTAACGTCATTTTTCGGGGATTTAGGATNNNNNNNNNNNNTTCTTAATGCAATAAACATTTTTGGTCGGAGTCCCCCTTTAATATCCTTTTCAATTTCCCTTCTTTTTAGATAATTGAAAGAAACATTCAAACTATTTTTTTCCGAAAATTTAGAGGATCTCAAAAACCATGATGAAGCTTGGGATATGCAGCAACTCTTTAACTCCTTTTATCAGAATGTCCAGTATAGATTCAGATACGGAAGTGTTTTTCTCGTACACATCTCTACTTGAATATTAAGTTCAGTGGTGTTGCATTTAAATGATTTATTCGAATTAATTATTCTTAAACGATTGGTTGAGTACCGCAGTCCGTTTTGTGTCTGAACTGGCAGGAAGTCCTCCTTTGAACGAGTCGTCTTCATTGTGGGTACGATAGGAGTTGAGTTATCAATGGAACTCGACGAAAAAGGAATCGCTGTTTTTGCTGATTTCTTGCACCAGTTGCTCGTGAAGTTCTTCGAATGTTCCTTCAAAAATGCCTCGATTCGTTTTGGCCAGTATCCACCATCCAAATAGAAGTTTTCGAGAAGTTCTTGTACATCCGTCTAGCATAGGATCGTTGAACAAATAATAGTAATCACCGGGAGCTGCACACCAGAACTGACACATCTTGTAGCCAATGGATGCAGCATACACGAAGTACGACAAGACAATGCTTTCAGTGATATAACGGTTCGAGTCCAGATATCCAAGAACTGTCCATTTCGACTTTGGTGTAGTTTCCTTGCCTGCTCCAAACTCATGAACAGTGTAAGCGAGGAACAGTGCTTCATCTTTCGCCTTATCTTGACCTTCTTCTGATTCATCAGGCTTCAGAA</canonical>
            <polymorphic>CCGTCAGGTAAAAAACGTAAAATACCACTGTCGGCCACTTGAAAAAACGGCTGTCAGGCGCCGTGACCTAGGTTTCTCACTGCGCGTGAATTCAAATCCTCGTCCCTCCTAGCAACTTTTTTTTTGAAATTTTTTCGCTTTTAACGTCATTTTTCGGGGATTTAGGATNNNNNNNNNNNNTTCTTAATGCAATAAACATTTTTGGTCGGAGTCCCCCTTTAATATCCTTTTCAATTTCCCTTCTTTTTAGATAATTGAAAGAAACATTCAAACTATTTTTTTCCGAAAATTTAGAGGATCTCAAAAACCATGATGAAGCTTGGGATATGCAGCAACTCTTTAACTCCTTTTATCAGAATGTCCAGTATAGATTCAGATACGGAAGTGTTTTTCTCGTACACATCTCTACTTGAATATTAAGTTCAGTGGTGTTGCATTTAAATGATTTATTCGAATTAATTATTCTTAAACGATTGGTTGAGTACCGCAGTCCGTTTTGKGTCTGAACTGGCAGGAAGTCCTCCTTTGAACGAGTCGTCTTCATTGTGGGTACGATAGGAGTTGAGTTATCAATGGAACTCGACGAAAAAGGAATCGCTGTTTTTGCTGATTTCTTGCACCAGTTGCTCGTGAAGTTCTTCGAATGTTCCTTCAAAAATGCCTCGATTCGTTTTGGCCAGTATCCACCATCCAAATAGAAGTTTTCGAGAAGTTCTTGTACATCCGTCTAGCATAGGATCGTTGAACAAATAATAGTAATCACCGGGAGCTGCACACCAGAACTGACACATCTTGTAGCCAATGGATGCAGCATACACGAAGTACGACAAGACAATGCTTTCAGTGATATAACGGTTCGAGTCCAGATATCCAAGAACTGTCCATTTCGACTTTGGTGTAGTTTCCTTGCCTGCTCCAAACTCATGAACAGTGTAAGCGAGGAACAGTGCTTCATCTTTCGCCTTATCTTGACCTTCTTCTGATTCATCAGGCTTCAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>299 76 71 70 54 52 51 47 35 29 29 28 28 27 16 14 13 13 12 12 10 9 3 2</canonical_bands>
                <polymorphic_bands>299 117 76 71 54 52 51 35 29 29 28 28 27 16 14 13 13 12 12 10 9 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATATGCAGCAACTCTTTAACTC</pcr_primer_p1>
		<pcr_primer_p2>AACTCCTATCGTACCCACAAT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GATATGCAGCAACTCTTTAACTCCTTTTATCAGAATGTCCAGTATAGATTCAGATACGGAAGTGTTTTTCTCGTACACATCTCTACTTGAATATTAAGTTCAGTGGTGTTGCATTTAAATGATTTATTCGAATTAATTATTCTTAAACGATTGGTTGAGTACCGCAGTCCGTTTTGTGTCTGAACTGGCAGGAAGTCCTCCTTTGAACGAGTCGTCTTCATTGTGGGTACGATAGGAGTT</canonical_amplicon>
		<polymorphic_amplicon>GATATGCAGCAACTCTTTAACTCCTTTTATCAGAATGTCCAGTATAGATTCAGATACGGAAGTGTTTTTCTCGTACACATCTCTACTTGAATATTAAGTTCAGTGGTGTTGCATTTAAATGATTTATTCGAATTAATTATTCTTAAACGATTGGTTGAGTACCGCAGTCCGTTTTGKGTCTGAACTGGCAGGAAGTCCTCCTTTGAACGAGTCGTCTTCATTGTGGGTACGATAGGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7732</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>127699</contig_pos>
        <strand>+</strand>
        <context>GTCTGAACTG[C/G]CAGGAAGTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TATTCTTAAACGATTGGTTGAGTACCGCAGTCCGTTTTGTGTCTGAACTG</left_flank>
        <right_flank>CAGGAAGTCCTCCTTTGAACGAGTCGTCTTCATTGTGGGTACGATAGGAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACGTAAAATACCACTGTCGGCCACTTGAAAAAACGGCTGTCAGGCGCCGTGACCTAGGTTTCTCACTGCGCGTGAATTCAAATCCTCGTCCCTCCTAGCAACTTTTTTTTTGAAATTTTTTCGCTTTTAACGTCATTTTTCGGGGATTTAGGATNNNNNNNNNNNNTTCTTAATGCAATAAACATTTTTGGTCGGAGTCCCCCTTTAATATCCTTTTCAATTTCCCTTCTTTTTAGATAATTGAAAGAAACATTCAAACTATTTTTTTCCGAAAATTTAGAGGATCTCAAAAACCATGATGAAGCTTGGGATATGCAGCAACTCTTTAACTCCTTTTATCAGAATGTCCAGTATAGATTCAGATACGGAAGTGTTTTTCTCGTACACATCTCTACTTGAATATTAAGTTCAGTGGTGTTGCATTTAAATGATTTATTCGAATTAATTATTCTTAAACGATTGGTTGAGTACCGCAGTCCGTTTTGTGTCTGAACTGGCAGGAAGTCCTCCTTTGAACGAGTCGTCTTCATTGTGGGTACGATAGGAGTTGAGTTATCAATGGAACTCGACGAAAAAGGAATCGCTGTTTTTGCTGATTTCTTGCACCAGTTGCTCGTGAAGTTCTTCGAATGTTCCTTCAAAAATGCCTCGATTCGTTTTGGCCAGTATCCACCATCCAAATAGAAGTTTTCGAGAAGTTCTTGTACATCCGTCTAGCATAGGATCGTTGAACAAATAATAGTAATCACCGGGAGCTGCACACCAGAACTGACACATCTTGTAGCCAATGGATGCAGCATACACGAAGTACGACAAGACAATGCTTTCAGTGATATAACGGTTCGAGTCCAGATATCCAAGAACTGTCCATTTCGACTTTGGTGTAGTTTCCTTGCCTGCTCCAAACTCATGAACAGTGTAAGCGAGGAACAGTGCTTCATCTTTCGCCTTATCTTGACCTTCTTCTGATTCATCAGGCTTCAGAAACACGAGAATC</canonical>
            <polymorphic>AAAACGTAAAATACCACTGTCGGCCACTTGAAAAAACGGCTGTCAGGCGCCGTGACCTAGGTTTCTCACTGCGCGTGAATTCAAATCCTCGTCCCTCCTAGCAACTTTTTTTTTGAAATTTTTTCGCTTTTAACGTCATTTTTCGGGGATTTAGGATNNNNNNNNNNNNTTCTTAATGCAATAAACATTTTTGGTCGGAGTCCCCCTTTAATATCCTTTTCAATTTCCCTTCTTTTTAGATAATTGAAAGAAACATTCAAACTATTTTTTTCCGAAAATTTAGAGGATCTCAAAAACCATGATGAAGCTTGGGATATGCAGCAACTCTTTAACTCCTTTTATCAGAATGTCCAGTATAGATTCAGATACGGAAGTGTTTTTCTCGTACACATCTCTACTTGAATATTAAGTTCAGTGGTGTTGCATTTAAATGATTTATTCGAATTAATTATTCTTAAACGATTGGTTGAGTACCGCAGTCCGTTTTGTGTCTGAACTGSCAGGAAGTCCTCCTTTGAACGAGTCGTCTTCATTGTGGGTACGATAGGAGTTGAGTTATCAATGGAACTCGACGAAAAAGGAATCGCTGTTTTTGCTGATTTCTTGCACCAGTTGCTCGTGAAGTTCTTCGAATGTTCCTTCAAAAATGCCTCGATTCGTTTTGGCCAGTATCCACCATCCAAATAGAAGTTTTCGAGAAGTTCTTGTACATCCGTCTAGCATAGGATCGTTGAACAAATAATAGTAATCACCGGGAGCTGCACACCAGAACTGACACATCTTGTAGCCAATGGATGCAGCATACACGAAGTACGACAAGACAATGCTTTCAGTGATATAACGGTTCGAGTCCAGATATCCAAGAACTGTCCATTTCGACTTTGGTGTAGTTTCCTTGCCTGCTCCAAACTCATGAACAGTGTAAGCGAGGAACAGTGCTTCATCTTTCGCCTTATCTTGACCTTCTTCTGATTCATCAGGCTTCAGAAACACGAGAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATTAATTATTCTTAAACGATTG</pcr_primer_p1>
		<pcr_primer_p2>CTTCTATTTGGATGGTGGATAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGAATTAATTATTCTTAAACGATTGGTTGAGTACCGCAGTCCGTTTTGTGTCTGAACTGGCAGGAAGTCCTCCTTTGAACGAGTCGTCTTCATTGTGGGTACGATAGGAGTTGAGTTATCAATGGAACTCGACGAAAAAGGAATCGCTGTTTTTGCTGATTTCTTGCACCAGTTGCTCGTGAAGTTCTTCGAATGTTCCTTCAAAAATGCCTCGATTCGTTTTGGCCAGTATCCACCATCCAAATAGAAG</canonical_amplicon>
		<polymorphic_amplicon>CGAATTAATTATTCTTAAACGATTGGTTGAGTACCGCAGTCCGTTTTGTGTCTGAACTGSCAGGAAGTCCTCCTTTGAACGAGTCGTCTTCATTGTGGGTACGATAGGAGTTGAGTTATCAATGGAACTCGACGAAAAAGGAATCGCTGTTTTTGCTGATTTCTTGCACCAGTTGCTCGTGAAGTTCTTCGAATGTTCCTTCAAAAATGCCTCGATTCGTTTTGGCCAGTATCCACCATCCAAATAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7733</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>127756</contig_pos>
        <strand>+</strand>
        <context>GGAGTTGAGT[C/T]ATCAATGGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCCTCCTTTGAACGAGTCGTCTTCATTGTGGGTACGATAGGAGTTGAGT</left_flank>
        <right_flank>ATCAATGGAACTCGACGAAAAAGGAATCGCTGTTTTTGCTGATTTCTTGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGTTTCTCACTGCGCGTGAATTCAAATCCTCGTCCCTCCTAGCAACTTTTTTTTTGAAATTTTTTCGCTTTTAACGTCATTTTTCGGGGATTTAGGATNNNNNNNNNNNNTTCTTAATGCAATAAACATTTTTGGTCGGAGTCCCCCTTTAATATCCTTTTCAATTTCCCTTCTTTTTAGATAATTGAAAGAAACATTCAAACTATTTTTTTCCGAAAATTTAGAGGATCTCAAAAACCATGATGAAGCTTGGGATATGCAGCAACTCTTTAACTCCTTTTATCAGAATGTCCAGTATAGATTCAGATACGGAAGTGTTTTTCTCGTACACATCTCTACTTGAATATTAAGTTCAGTGGTGTTGCATTTAAATGATTTATTCGAATTAATTATTCTTAAACGATTGGTTGAGTACCGCAGTCCGTTTTGTGTCTGAACTGGCAGGAAGTCCTCCTTTGAACGAGTCGTCTTCATTGTGGGTACGATAGGAGTTGAGTTATCAATGGAACTCGACGAAAAAGGAATCGCTGTTTTTGCTGATTTCTTGCACCAGTTGCTCGTGAAGTTCTTCGAATGTTCCTTCAAAAATGCCTCGATTCGTTTTGGCCAGTATCCACCATCCAAATAGAAGTTTTCGAGAAGTTCTTGTACATCCGTCTAGCATAGGATCGTTGAACAAATAATAGTAATCACCGGGAGCTGCACACCAGAACTGACACATCTTGTAGCCAATGGATGCAGCATACACGAAGTACGACAAGACAATGCTTTCAGTGATATAACGGTTCGAGTCCAGATATCCAAGAACTGTCCATTTCGACTTTGGTGTAGTTTCCTTGCCTGCTCCAAACTCATGAACAGTGTAAGCGAGGAACAGTGCTTCATCTTTCGCCTTATCTTGACCTTCTTCTGATTCATCAGGCTTCAGAAACACGAGAATCATCTTATAGTGAAACTTGTATTCCGGAACAGCGATGTCGTTCTCTTTGCAGAAATCG</canonical>
            <polymorphic>TAGGTTTCTCACTGCGCGTGAATTCAAATCCTCGTCCCTCCTAGCAACTTTTTTTTTGAAATTTTTTCGCTTTTAACGTCATTTTTCGGGGATTTAGGATNNNNNNNNNNNNTTCTTAATGCAATAAACATTTTTGGTCGGAGTCCCCCTTTAATATCCTTTTCAATTTCCCTTCTTTTTAGATAATTGAAAGAAACATTCAAACTATTTTTTTCCGAAAATTTAGAGGATCTCAAAAACCATGATGAAGCTTGGGATATGCAGCAACTCTTTAACTCCTTTTATCAGAATGTCCAGTATAGATTCAGATACGGAAGTGTTTTTCTCGTACACATCTCTACTTGAATATTAAGTTCAGTGGTGTTGCATTTAAATGATTTATTCGAATTAATTATTCTTAAACGATTGGTTGAGTACCGCAGTCCGTTTTGTGTCTGAACTGGCAGGAAGTCCTCCTTTGAACGAGTCGTCTTCATTGTGGGTACGATAGGAGTTGAGTYATCAATGGAACTCGACGAAAAAGGAATCGCTGTTTTTGCTGATTTCTTGCACCAGTTGCTCGTGAAGTTCTTCGAATGTTCCTTCAAAAATGCCTCGATTCGTTTTGGCCAGTATCCACCATCCAAATAGAAGTTTTCGAGAAGTTCTTGTACATCCGTCTAGCATAGGATCGTTGAACAAATAATAGTAATCACCGGGAGCTGCACACCAGAACTGACACATCTTGTAGCCAATGGATGCAGCATACACGAAGTACGACAAGACAATGCTTTCAGTGATATAACGGTTCGAGTCCAGATATCCAAGAACTGTCCATTTCGACTTTGGTGTAGTTTCCTTGCCTGCTCCAAACTCATGAACAGTGTAAGCGAGGAACAGTGCTTCATCTTTCGCCTTATCTTGACCTTCTTCTGATTCATCAGGCTTCAGAAACACGAGAATCATCTTATAGTGAAACTTGTATTCCGGAACAGCGATGTCGTTCTCTTTGCAGAAATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATTAATTATTCTTAAACGATTG</pcr_primer_p1>
		<pcr_primer_p2>CTTCTATTTGGATGGTGGATAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGAATTAATTATTCTTAAACGATTGGTTGAGTACCGCAGTCCGTTTTGTGTCTGAACTGGCAGGAAGTCCTCCTTTGAACGAGTCGTCTTCATTGTGGGTACGATAGGAGTTGAGTTATCAATGGAACTCGACGAAAAAGGAATCGCTGTTTTTGCTGATTTCTTGCACCAGTTGCTCGTGAAGTTCTTCGAATGTTCCTTCAAAAATGCCTCGATTCGTTTTGGCCAGTATCCACCATCCAAATAGAAG</canonical_amplicon>
		<polymorphic_amplicon>CGAATTAATTATTCTTAAACGATTGGTTGAGTACCGCAGTCCGTTTTGTGTCTGAACTGGCAGGAAGTCCTCCTTTGAACGAGTCGTCTTCATTGTGGGTACGATAGGAGTTGAGTYATCAATGGAACTCGACGAAAAAGGAATCGCTGTTTTTGCTGATTTCTTGCACCAGTTGCTCGTGAAGTTCTTCGAATGTTCCTTCAAAAATGCCTCGATTCGTTTTGGCCAGTATCCACCATCCAAATAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7734</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>127772</contig_pos>
        <strand>+</strand>
        <context>TGGAACTCGA[C/T]GAAAAAGGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCGTCTTCATTGTGGGTACGATAGGAGTTGAGTTATCAATGGAACTCGA</left_flank>
        <right_flank>GAAAAAGGAATCGCTGTTTTTGCTGATTTCTTGCACCAGTTGCTCGTGAA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTGAATTCAAATCCTCGTCCCTCCTAGCAACTTTTTTTTTGAAATTTTTTCGCTTTTAACGTCATTTTTCGGGGATTTAGGATNNNNNNNNNNNNTTCTTAATGCAATAAACATTTTTGGTCGGAGTCCCCCTTTAATATCCTTTTCAATTTCCCTTCTTTTTAGATAATTGAAAGAAACATTCAAACTATTTTTTTCCGAAAATTTAGAGGATCTCAAAAACCATGATGAAGCTTGGGATATGCAGCAACTCTTTAACTCCTTTTATCAGAATGTCCAGTATAGATTCAGATACGGAAGTGTTTTTCTCGTACACATCTCTACTTGAATATTAAGTTCAGTGGTGTTGCATTTAAATGATTTATTCGAATTAATTATTCTTAAACGATTGGTTGAGTACCGCAGTCCGTTTTGTGTCTGAACTGGCAGGAAGTCCTCCTTTGAACGAGTCGTCTTCATTGTGGGTACGATAGGAGTTGAGTTATCAATGGAACTCGACGAAAAAGGAATCGCTGTTTTTGCTGATTTCTTGCACCAGTTGCTCGTGAAGTTCTTCGAATGTTCCTTCAAAAATGCCTCGATTCGTTTTGGCCAGTATCCACCATCCAAATAGAAGTTTTCGAGAAGTTCTTGTACATCCGTCTAGCATAGGATCGTTGAACAAATAATAGTAATCACCGGGAGCTGCACACCAGAACTGACACATCTTGTAGCCAATGGATGCAGCATACACGAAGTACGACAAGACAATGCTTTCAGTGATATAACGGTTCGAGTCCAGATATCCAAGAACTGTCCATTTCGACTTTGGTGTAGTTTCCTTGCCTGCTCCAAACTCATGAACAGTGTAAGCGAGGAACAGTGCTTCATCTTTCGCCTTATCTTGACCTTCTTCTGATTCATCAGGCTTCAGAAACACGAGAATCATCTTATAGTGAAACTTGTATTCCGGAACAGCGATGTCGTTCTCTTTGCAGAAATCGGTCAATCTCTCGCCAA</canonical>
            <polymorphic>CGTGAATTCAAATCCTCGTCCCTCCTAGCAACTTTTTTTTTGAAATTTTTTCGCTTTTAACGTCATTTTTCGGGGATTTAGGATNNNNNNNNNNNNTTCTTAATGCAATAAACATTTTTGGTCGGAGTCCCCCTTTAATATCCTTTTCAATTTCCCTTCTTTTTAGATAATTGAAAGAAACATTCAAACTATTTTTTTCCGAAAATTTAGAGGATCTCAAAAACCATGATGAAGCTTGGGATATGCAGCAACTCTTTAACTCCTTTTATCAGAATGTCCAGTATAGATTCAGATACGGAAGTGTTTTTCTCGTACACATCTCTACTTGAATATTAAGTTCAGTGGTGTTGCATTTAAATGATTTATTCGAATTAATTATTCTTAAACGATTGGTTGAGTACCGCAGTCCGTTTTGTGTCTGAACTGGCAGGAAGTCCTCCTTTGAACGAGTCGTCTTCATTGTGGGTACGATAGGAGTTGAGTTATCAATGGAACTCGAYGAAAAAGGAATCGCTGTTTTTGCTGATTTCTTGCACCAGTTGCTCGTGAAGTTCTTCGAATGTTCCTTCAAAAATGCCTCGATTCGTTTTGGCCAGTATCCACCATCCAAATAGAAGTTTTCGAGAAGTTCTTGTACATCCGTCTAGCATAGGATCGTTGAACAAATAATAGTAATCACCGGGAGCTGCACACCAGAACTGACACATCTTGTAGCCAATGGATGCAGCATACACGAAGTACGACAAGACAATGCTTTCAGTGATATAACGGTTCGAGTCCAGATATCCAAGAACTGTCCATTTCGACTTTGGTGTAGTTTCCTTGCCTGCTCCAAACTCATGAACAGTGTAAGCGAGGAACAGTGCTTCATCTTTCGCCTTATCTTGACCTTCTTCTGATTCATCAGGCTTCAGAAACACGAGAATCATCTTATAGTGAAACTTGTATTCCGGAACAGCGATGTCGTTCTCTTTGCAGAAATCGGTCAATCTCTCGCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAATTAATTATTCTTAAACGATTG</pcr_primer_p1>
		<pcr_primer_p2>CTTCTATTTGGATGGTGGATAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGAATTAATTATTCTTAAACGATTGGTTGAGTACCGCAGTCCGTTTTGTGTCTGAACTGGCAGGAAGTCCTCCTTTGAACGAGTCGTCTTCATTGTGGGTACGATAGGAGTTGAGTTATCAATGGAACTCGACGAAAAAGGAATCGCTGTTTTTGCTGATTTCTTGCACCAGTTGCTCGTGAAGTTCTTCGAATGTTCCTTCAAAAATGCCTCGATTCGTTTTGGCCAGTATCCACCATCCAAATAGAAG</canonical_amplicon>
		<polymorphic_amplicon>CGAATTAATTATTCTTAAACGATTGGTTGAGTACCGCAGTCCGTTTTGTGTCTGAACTGGCAGGAAGTCCTCCTTTGAACGAGTCGTCTTCATTGTGGGTACGATAGGAGTTGAGTTATCAATGGAACTCGAYGAAAAAGGAATCGCTGTTTTTGCTGATTTCTTGCACCAGTTGCTCGTGAAGTTCTTCGAATGTTCCTTCAAAAATGCCTCGATTCGTTTTGGCCAGTATCCACCATCCAAATAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7735</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>127846</contig_pos>
        <strand>+</strand>
        <context>TCCTTCAAAA[A/T]TGCCTCRATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGATTTCTTGCACCAGTTGCTCGTGAAGTTCTTCGAATGTTCCTTCAAAA</left_flank>
        <right_flank>TGCCTCGATTCGTTTTGGCCAGTATCCACCATCCAAATAGAAGTTTTCGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTAGGATNNNNNNNNNNNNTTCTTAATGCAATAAACATTTTTGGTCGGAGTCCCCCTTTAATATCCTTTTCAATTTCCCTTCTTTTTAGATAATTGAAAGAAACATTCAAACTATTTTTTTCCGAAAATTTAGAGGATCTCAAAAACCATGATGAAGCTTGGGATATGCAGCAACTCTTTAACTCCTTTTATCAGAATGTCCAGTATAGATTCAGATACGGAAGTGTTTTTCTCGTACACATCTCTACTTGAATATTAAGTTCAGTGGTGTTGCATTTAAATGATTTATTCGAATTAATTATTCTTAAACGATTGGTTGAGTACCGCAGTCCGTTTTGTGTCTGAACTGGCAGGAAGTCCTCCTTTGAACGAGTCGTCTTCATTGTGGGTACGATAGGAGTTGAGTTATCAATGGAACTCGACGAAAAAGGAATCGCTGTTTTTGCTGATTTCTTGCACCAGTTGCTCGTGAAGTTCTTCGAATGTTCCTTCAAAAATGCCTCGATTCGTTTTGGCCAGTATCCACCATCCAAATAGAAGTTTTCGAGAAGTTCTTGTACATCCGTCTAGCATAGGATCGTTGAACAAATAATAGTAATCACCGGGAGCTGCACACCAGAACTGACACATCTTGTAGCCAATGGATGCAGCATACACGAAGTACGACAAGACAATGCTTTCAGTGATATAACGGTTCGAGTCCAGATATCCAAGAACTGTCCATTTCGACTTTGGTGTAGTTTCCTTGCCTGCTCCAAACTCATGAACAGTGTAAGCGAGGAACAGTGCTTCATCTTTCGCCTTATCTTGACCTTCTTCTGATTCATCAGGCTTCAGAAACACGAGAATCATCTTATAGTGAAACTTGTATTCCGGAACAGCGATGTCGTTCTCTTTGCAGAAATCGGTCAATCTCTCGCCAATGGTCCCATTCCTTTCCATCATTTGCTGCCACACCTTTTTCCTTTTTCTTGCGATCCATTTTCTCAAGTTTGTC</canonical>
            <polymorphic>GATTTAGGATNNNNNNNNNNNNTTCTTAATGCAATAAACATTTTTGGTCGGAGTCCCCCTTTAATATCCTTTTCAATTTCCCTTCTTTTTAGATAATTGAAAGAAACATTCAAACTATTTTTTTCCGAAAATTTAGAGGATCTCAAAAACCATGATGAAGCTTGGGATATGCAGCAACTCTTTAACTCCTTTTATCAGAATGTCCAGTATAGATTCAGATACGGAAGTGTTTTTCTCGTACACATCTCTACTTGAATATTAAGTTCAGTGGTGTTGCATTTAAATGATTTATTCGAATTAATTATTCTTAAACGATTGGTTGAGTACCGCAGTCCGTTTTGTGTCTGAACTGGCAGGAAGTCCTCCTTTGAACGAGTCGTCTTCATTGTGGGTACGATAGGAGTTGAGTTATCAATGGAACTCGACGAAAAAGGAATCGCTGTTTTTGCTGATTTCTTGCACCAGTTGCTCGTGAAGTTCTTCGAATGTTCCTTCAAAAWTGCCTCGATTCGTTTTGGCCAGTATCCACCATCCAAATAGAAGTTTTCGAGAAGTTCTTGTACATCCGTCTAGCATAGGATCGTTGAACAAATAATAGTAATCACCGGGAGCTGCACACCAGAACTGACACATCTTGTAGCCAATGGATGCAGCATACACGAAGTACGACAAGACAATGCTTTCAGTGATATAACGGTTCGAGTCCAGATATCCAAGAACTGTCCATTTCGACTTTGGTGTAGTTTCCTTGCCTGCTCCAAACTCATGAACAGTGTAAGCGAGGAACAGTGCTTCATCTTTCGCCTTATCTTGACCTTCTTCTGATTCATCAGGCTTCAGAAACACGAGAATCATCTTATAGTGAAACTTGTATTCCGGAACAGCGATGTCGTTCTCTTTGCAGAAATCGGTCAATCTCTCGCCAATGGTCCCATTCCTTTCCATCATTTGCTGCCACACCTTTTTCCTTTTTCTTGCGATCCATTTTCTCAAGTTTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGTGGGTACGATAGGAGTT</pcr_primer_p1>
		<pcr_primer_p2>AGATGTGTCAGTTCTGGTGTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTGTGGGTACGATAGGAGTTGAGTTATCAATGGAACTCGACGAAAAAGGAATCGCTGTTTTTGCTGATTTCTTGCACCAGTTGCTCGTGAAGTTCTTCGAATGTTCCTTCAAAAATGCCTCGATTCGTTTTGGCCAGTATCCACCATCCAAATAGAAGTTTTCGAGAAGTTCTTGTACATCCGTCTAGCATAGGATCGTTGAACAAATAATAGTAATCACCGGGAGCTGCACACCAGAACTGACACATCT</canonical_amplicon>
		<polymorphic_amplicon>ATTGTGGGTACGATAGGAGTTGAGTTATCAATGGAACTCGACGAAAAAGGAATCGCTGTTTTTGCTGATTTCTTGCACCAGTTGCTCGTGAAGTTCTTCGAATGTTCCTTCAAAAWTGCCTCGATTCGTTTTGGCCAGTATCCACCATCCAAATAGAAGTTTTCGAGAAGTTCTTGTACATCCGTCTAGCATAGGATCGTTGAACAAATAATAGTAATCACCGGGAGCTGCACACCAGAACTGACACATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7736</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>127853</contig_pos>
        <strand>+</strand>
        <context>AAAWTGCCTC[A/G]ATTCGTTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGCACCAGTTGCTCGTGAAGTTCTTCGAATGTTCCTTCAAAAATGCCTC</left_flank>
        <right_flank>ATTCGTTTTGGCCAGTATCCACCATCCAAATAGAAGTTTTCGAGAAGTTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATNNNNNNNNNNNNTTCTTAATGCAATAAACATTTTTGGTCGGAGTCCCCCTTTAATATCCTTTTCAATTTCCCTTCTTTTTAGATAATTGAAAGAAACATTCAAACTATTTTTTTCCGAAAATTTAGAGGATCTCAAAAACCATGATGAAGCTTGGGATATGCAGCAACTCTTTAACTCCTTTTATCAGAATGTCCAGTATAGATTCAGATACGGAAGTGTTTTTCTCGTACACATCTCTACTTGAATATTAAGTTCAGTGGTGTTGCATTTAAATGATTTATTCGAATTAATTATTCTTAAACGATTGGTTGAGTACCGCAGTCCGTTTTGTGTCTGAACTGGCAGGAAGTCCTCCTTTGAACGAGTCGTCTTCATTGTGGGTACGATAGGAGTTGAGTTATCAATGGAACTCGACGAAAAAGGAATCGCTGTTTTTGCTGATTTCTTGCACCAGTTGCTCGTGAAGTTCTTCGAATGTTCCTTCAAAAATGCCTCGATTCGTTTTGGCCAGTATCCACCATCCAAATAGAAGTTTTCGAGAAGTTCTTGTACATCCGTCTAGCATAGGATCGTTGAACAAATAATAGTAATCACCGGGAGCTGCACACCAGAACTGACACATCTTGTAGCCAATGGATGCAGCATACACGAAGTACGACAAGACAATGCTTTCAGTGATATAACGGTTCGAGTCCAGATATCCAAGAACTGTCCATTTCGACTTTGGTGTAGTTTCCTTGCCTGCTCCAAACTCATGAACAGTGTAAGCGAGGAACAGTGCTTCATCTTTCGCCTTATCTTGACCTTCTTCTGATTCATCAGGCTTCAGAAACACGAGAATCATCTTATAGTGAAACTTGTATTCCGGAACAGCGATGTCGTTCTCTTTGCAGAAATCGGTCAATCTCTCGCCAATGGTCCCATTCCTTTCCATCATTTGCTGCCACACCTTTTTCCTTTTTCTTGCGATCCATTTTCTCAAGTTTGTCCTTTTCC</canonical>
            <polymorphic>GATNNNNNNNNNNNNTTCTTAATGCAATAAACATTTTTGGTCGGAGTCCCCCTTTAATATCCTTTTCAATTTCCCTTCTTTTTAGATAATTGAAAGAAACATTCAAACTATTTTTTTCCGAAAATTTAGAGGATCTCAAAAACCATGATGAAGCTTGGGATATGCAGCAACTCTTTAACTCCTTTTATCAGAATGTCCAGTATAGATTCAGATACGGAAGTGTTTTTCTCGTACACATCTCTACTTGAATATTAAGTTCAGTGGTGTTGCATTTAAATGATTTATTCGAATTAATTATTCTTAAACGATTGGTTGAGTACCGCAGTCCGTTTTGTGTCTGAACTGGCAGGAAGTCCTCCTTTGAACGAGTCGTCTTCATTGTGGGTACGATAGGAGTTGAGTTATCAATGGAACTCGACGAAAAAGGAATCGCTGTTTTTGCTGATTTCTTGCACCAGTTGCTCGTGAAGTTCTTCGAATGTTCCTTCAAAAATGCCTCRATTCGTTTTGGCCAGTATCCACCATCCAAATAGAAGTTTTCGAGAAGTTCTTGTACATCCGTCTAGCATAGGATCGTTGAACAAATAATAGTAATCACCGGGAGCTGCACACCAGAACTGACACATCTTGTAGCCAATGGATGCAGCATACACGAAGTACGACAAGACAATGCTTTCAGTGATATAACGGTTCGAGTCCAGATATCCAAGAACTGTCCATTTCGACTTTGGTGTAGTTTCCTTGCCTGCTCCAAACTCATGAACAGTGTAAGCGAGGAACAGTGCTTCATCTTTCGCCTTATCTTGACCTTCTTCTGATTCATCAGGCTTCAGAAACACGAGAATCATCTTATAGTGAAACTTGTATTCCGGAACAGCGATGTCGTTCTCTTTGCAGAAATCGGTCAATCTCTCGCCAATGGTCCCATTCCTTTCCATCATTTGCTGCCACACCTTTTTCCTTTTTCTTGCGATCCATTTTCTCAAGTTTGTCCTTTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>287 277 152 129 60 42 30 23</canonical_bands>
                <polymorphic_bands>287 277 152 129 65 60 30</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>194 162 161 158 123 73 60 44 25</canonical_bands>
                <polymorphic_bands>267 162 161 158 123 60 44 25</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>317 222 205 158 73 25</canonical_bands>
                <polymorphic_bands>390 222 205 158 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGTGGGTACGATAGGAGTT</pcr_primer_p1>
		<pcr_primer_p2>AGATGTGTCAGTTCTGGTGTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTGTGGGTACGATAGGAGTTGAGTTATCAATGGAACTCGACGAAAAAGGAATCGCTGTTTTTGCTGATTTCTTGCACCAGTTGCTCGTGAAGTTCTTCGAATGTTCCTTCAAAAATGCCTCGATTCGTTTTGGCCAGTATCCACCATCCAAATAGAAGTTTTCGAGAAGTTCTTGTACATCCGTCTAGCATAGGATCGTTGAACAAATAATAGTAATCACCGGGAGCTGCACACCAGAACTGACACATCT</canonical_amplicon>
		<polymorphic_amplicon>ATTGTGGGTACGATAGGAGTTGAGTTATCAATGGAACTCGACGAAAAAGGAATCGCTGTTTTTGCTGATTTCTTGCACCAGTTGCTCGTGAAGTTCTTCGAATGTTCCTTCAAAAATGCCTCRATTCGTTTTGGCCAGTATCCACCATCCAAATAGAAGTTTTCGAGAAGTTCTTGTACATCCGTCTAGCATAGGATCGTTGAACAAATAATAGTAATCACCGGGAGCTGCACACCAGAACTGACACATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7737</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>127946</contig_pos>
        <strand></strand>
        <context>AAATAATAGT[A/C]ATCACCGGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAAGTTCTTGTACATCCGTCTAGCATAGGATCGTTGAACAAATAATAGT</left_flank>
        <right_flank>ATCACCGGGAGCTGCACACCAGAACTGACACATCTTGTAGCCAATGGATG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAACATTCAAACTATTTTTTTCCGAAAATTTAGAGGATCTCAAAAACCATGATGAAGCTTGGGATATGCAGCAACTCTTTAACTCCTTTTATCAGAATGTCCAGTATAGATTCAGATACGGAAGTGTTTTTCTCGTACACATCTCTACTTGAATATTAAGTTCAGTGGTGTTGCATTTAAATGATTTATTCGAATTAATTATTCTTAAACGATTGGTTGAGTACCGCAGTCCGTTTTGTGTCTGAACTGGCAGGAAGTCCTCCTTTGAACGAGTCGTCTTCATTGTGGGTACGATAGGAGTTGAGTTATCAATGGAACTCGACGAAAAAGGAATCGCTGTTTTTGCTGATTTCTTGCACCAGTTGCTCGTGAAGTTCTTCGAATGTTCCTTCAAAAATGCCTCGATTCGTTTTGGCCAGTATCCACCATCCAAATAGAAGTTTTCGAGAAGTTCTTGTACATCCGTCTAGCATAGGATCGTTGAACAAATAATAGTAATCACCGGGAGCTGCACACCAGAACTGACACATCTTGTAGCCAATGGATGCAGCATACACGAAGTACGACAAGACAATGCTTTCAGTGATATAACGGTTCGAGTCCAGATATCCAAGAACTGTCCATTTCGACTTTGGTGTAGTTTCCTTGCCTGCTCCAAACTCATGAACAGTGTAAGCGAGGAACAGTGCTTCATCTTTCGCCTTATCTTGACCTTCTTCTGATTCATCAGGCTTCAGAAACACGAGAATCATCTTATAGTGAAACTTGTATTCCGGAACAGCGATGTCGTTCTCTTTGCAGAAATCGGTCAATCTCTCGCCAATGGTCCCATTCCTTTCCATCATTTGCTGCCACACCTTTTTCCTTTTTCTTGCGATCCATTTTCTCAAGTTTGTCCTTTTCCAATCGCTCCCTTCGGTCCAGCTTCCTCCTAGCAACTGTTCTTGCGACACATCTACAATTAAGTTTTTTTTTTGAAATGAAAGCCGGAGAAGCT</canonical>
            <polymorphic>AAGAAACATTCAAACTATTTTTTTCCGAAAATTTAGAGGATCTCAAAAACCATGATGAAGCTTGGGATATGCAGCAACTCTTTAACTCCTTTTATCAGAATGTCCAGTATAGATTCAGATACGGAAGTGTTTTTCTCGTACACATCTCTACTTGAATATTAAGTTCAGTGGTGTTGCATTTAAATGATTTATTCGAATTAATTATTCTTAAACGATTGGTTGAGTACCGCAGTCCGTTTTGTGTCTGAACTGGCAGGAAGTCCTCCTTTGAACGAGTCGTCTTCATTGTGGGTACGATAGGAGTTGAGTTATCAATGGAACTCGACGAAAAAGGAATCGCTGTTTTTGCTGATTTCTTGCACCAGTTGCTCGTGAAGTTCTTCGAATGTTCCTTCAAAAATGCCTCGATTCGTTTTGGCCAGTATCCACCATCCAAATAGAAGTTTTCGAGAAGTTCTTGTACATCCGTCTAGCATAGGATCGTTGAACAAATAATAGTMATCACCGGGAGCTGCACACCAGAACTGACACATCTTGTAGCCAATGGATGCAGCATACACGAAGTACGACAAGACAATGCTTTCAGTGATATAACGGTTCGAGTCCAGATATCCAAGAACTGTCCATTTCGACTTTGGTGTAGTTTCCTTGCCTGCTCCAAACTCATGAACAGTGTAAGCGAGGAACAGTGCTTCATCTTTCGCCTTATCTTGACCTTCTTCTGATTCATCAGGCTTCAGAAACACGAGAATCATCTTATAGTGAAACTTGTATTCCGGAACAGCGATGTCGTTCTCTTTGCAGAAATCGGTCAATCTCTCGCCAATGGTCCCATTCCTTTCCATCATTTGCTGCCACACCTTTTTCCTTTTTCTTGCGATCCATTTTCTCAAGTTTGTCCTTTTCCAATCGCTCCCTTCGGTCCAGCTTCCTCCTAGCAACTGTTCTTGCGACACATCTACAATTAAGTTTTTTTTTTGAAATGAAAGCCGGAGAAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGTTCTTCGAATGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CAGTTCTTGGATATCTGGACTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAAGTTCTTCGAATGTTCCTTCAAAAATGCCTCGATTCGTTTTGGCCAGTATCCACCATCCAAATAGAAGTTTTCGAGAAGTTCTTGTACATCCGTCTAGCATAGGATCGTTGAACAAATAATAGTAATCACCGGGAGCTGCACACCAGAACTGACACATCTTGTAGCCAATGGATGCAGCATACACGAAGTACGACAAGACAATGCTTTCAGTGATATAACGGTTCGAGTCCAGATATCCAAGAACTG</canonical_amplicon>
		<polymorphic_amplicon>TGAAGTTCTTCGAATGTTCCTTCAAAAATGCCTCGATTCGTTTTGGCCAGTATCCACCATCCAAATAGAAGTTTTCGAGAAGTTCTTGTACATCCGTCTAGCATAGGATCGTTGAACAAATAATAGTMATCACCGGGAGCTGCACACCAGAACTGACACATCTTGTAGCCAATGGATGCAGCATACACGAAGTACGACAAGACAATGCTTTCAGTGATATAACGGTTCGAGTCCAGATATCCAAGAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7738</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>129588</contig_pos>
        <strand>+</strand>
        <context>ATCGAAGGAA[C/G]ACGCAATGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACTCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAA</left_flank>
        <right_flank>ACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGTCTTTTATACCATGAAAAGAGACGCAGAGAATAAATAAAAGGACAATGTTATTGGCGGCGACAGGGTGTCGGTACCCGACAAAGGGATCGAACGGTGGAGAAGAAGAGACGCAGAGAAAATGTTATTTTTACCTTTTTGTCGGGACACCTTTTTGATGCCGACATTTTCCGACAGAAATTCAAAAACGGTTCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCGTTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTACTCTTGGAATCTGAAAATTGACTTTTTTCAAGCAAGAACTTGACATAAGCAATCCGTTACCTCTCCACACACTTGATGCAATATGGCTGCAGAGTATTGGTTGGTTTTCCGGTCCTGGGATCCTTCGACGTGTAGGTGGAGATGAGAGGAATGTAGTTGAGAAGATTGTCGGTGCACGAGCGACATCTCTCCGTTTCATAGATTCCTTTGTTGAGCTCGCTTGGCTCGAAGACCTTGATATTCTTCTTCGCGAAGAAATCATGCTCTCTTTGAATTTTCGAGAGGCTTCTGGAATTTTTAAACTTGATTTTTTCATTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTCGGGGCCAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGT</canonical>
            <polymorphic>GAGGTCTTTTATACCATGAAAAGAGACGCAGAGAATAAATAAAAGGACAATGTTATTGGCGGCGACAGGGTGTCGGTACCCGACAAAGGGATCGAACGGTGGAGAAGAAGAGACGCAGAGAAAATGTTATTTTTACCTTTTTGTCGGGACACCTTTTTGATGCCGACATTTTCCGACAGAAATTCAAAAACGGTTCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCGTTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAASACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTACTCTTGGAATCTGAAAATTGACTTTTTTCAAGCAAGAACTTGACATAAGCAATCCGTTACCTCTCCACACACTTGATGCAATATGGCTGCAGAGTATTGGTTGGTTTTCCGGTCCTGGGATCCTTCGACGTGTAGGTGGAGATGAGAGGAATGTAGTTGAGAAGATTGTCGGTGCACGAGCGACATCTCTCCGTTTCATAGATTCCTTTGTTGAGCTCGCTTGGCTCGAAGACCTTGATATTCTTCTTCGCGAAGAAATCATGCTCTCTTTGAATTTTCGAGAGGCTTCTGGAATTTTTAAACTTGATTTTTTCATTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTCGGGGCCAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCCCTTAGATTTCTATTTCAGA</pcr_primer_p1>
		<pcr_primer_p2>TAGAAAAGGTGCAAAGTGTATTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTA</canonical_amplicon>
		<polymorphic_amplicon>ACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAASACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7739</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>129555</contig_pos>
        <strand></strand>
        <context>ATTTGTAATT[A/C]MTTTATTCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATT</left_flank>
        <right_flank>ATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAATAAGAATAATGAATAATTGTGAGCTAGTCGAGGTCTTTTATACCATGAAAAGAGACGCAGAGAATAAATAAAAGGACAATGTTATTGGCGGCGACAGGGTGTCGGTACCCGACAAAGGGATCGAACGGTGGAGAAGAAGAGACGCAGAGAAAATGTTATTTTTACCTTTTTGTCGGGACACCTTTTTGATGCCGACATTTTCCGACAGAAATTCAAAAACGGTTCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCGTTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTACTCTTGGAATCTGAAAATTGACTTTTTTCAAGCAAGAACTTGACATAAGCAATCCGTTACCTCTCCACACACTTGATGCAATATGGCTGCAGAGTATTGGTTGGTTTTCCGGTCCTGGGATCCTTCGACGTGTAGGTGGAGATGAGAGGAATGTAGTTGAGAAGATTGTCGGTGCACGAGCGACATCTCTCCGTTTCATAGATTCCTTTGTTGAGCTCGCTTGGCTCGAAGACCTTGATATTCTTCTTCGCGAAGAAATCATGCTCTCTTTGAATTTTCGAGAGGCTTCTGGAATTTTTAAACTTGATTTTTTCATTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTCGGGGCCAGAGTATGCATTCTACCG</canonical>
            <polymorphic>AGAATAAGAATAATGAATAATTGTGAGCTAGTCGAGGTCTTTTATACCATGAAAAGAGACGCAGAGAATAAATAAAAGGACAATGTTATTGGCGGCGACAGGGTGTCGGTACCCGACAAAGGGATCGAACGGTGGAGAAGAAGAGACGCAGAGAAAATGTTATTTTTACCTTTTTGTCGGGACACCTTTTTGATGCCGACATTTTCCGACAGAAATTCAAAAACGGTTCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCGTTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTMATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTACTCTTGGAATCTGAAAATTGACTTTTTTCAAGCAAGAACTTGACATAAGCAATCCGTTACCTCTCCACACACTTGATGCAATATGGCTGCAGAGTATTGGTTGGTTTTCCGGTCCTGGGATCCTTCGACGTGTAGGTGGAGATGAGAGGAATGTAGTTGAGAAGATTGTCGGTGCACGAGCGACATCTCTCCGTTTCATAGATTCCTTTGTTGAGCTCGCTTGGCTCGAAGACCTTGATATTCTTCTTCGCGAAGAAATCATGCTCTCTTTGAATTTTCGAGAGGCTTCTGGAATTTTTAAACTTGATTTTTTCATTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTCGGGGCCAGAGTATGCATTCTACCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>498 422 62 18</canonical_bands>
                <polymorphic_bands>920 62 18</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>257 195 179 138 86 54 42 20 18 7 4</canonical_bands>
                <polymorphic_bands>257 195 179 142 86 54 42 20 18 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCCCTTAGATTTCTATTTCAGA</pcr_primer_p1>
		<pcr_primer_p2>TAGAAAAGGTGCAAAGTGTATTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTA</canonical_amplicon>
		<polymorphic_amplicon>ACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTMATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7740</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>129539</contig_pos>
        <strand></strand>
        <context>GAACCACATA[C/T]YCTCAATTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATA</left_flank>
        <right_flank>TCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAAGA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCAGACATCCGCTTAGAATAAGAATAATGAATAATTGTGAGCTAGTCGAGGTCTTTTATACCATGAAAAGAGACGCAGAGAATAAATAAAAGGACAATGTTATTGGCGGCGACAGGGTGTCGGTACCCGACAAAGGGATCGAACGGTGGAGAAGAAGAGACGCAGAGAAAATGTTATTTTTACCTTTTTGTCGGGACACCTTTTTGATGCCGACATTTTCCGACAGAAATTCAAAAACGGTTCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCGTTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTACTCTTGGAATCTGAAAATTGACTTTTTTCAAGCAAGAACTTGACATAAGCAATCCGTTACCTCTCCACACACTTGATGCAATATGGCTGCAGAGTATTGGTTGGTTTTCCGGTCCTGGGATCCTTCGACGTGTAGGTGGAGATGAGAGGAATGTAGTTGAGAAGATTGTCGGTGCACGAGCGACATCTCTCCGTTTCATAGATTCCTTTGTTGAGCTCGCTTGGCTCGAAGACCTTGATATTCTTCTTCGCGAAGAAATCATGCTCTCTTTGAATTTTCGAGAGGCTTCTGGAATTTTTAAACTTGATTTTTTCATTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTCGGGGCCAG</canonical>
            <polymorphic>AATCAGACATCCGCTTAGAATAAGAATAATGAATAATTGTGAGCTAGTCGAGGTCTTTTATACCATGAAAAGAGACGCAGAGAATAAATAAAAGGACAATGTTATTGGCGGCGACAGGGTGTCGGTACCCGACAAAGGGATCGAACGGTGGAGAAGAAGAGACGCAGAGAAAATGTTATTTTTACCTTTTTGTCGGGACACCTTTTTGATGCCGACATTTTCCGACAGAAATTCAAAAACGGTTCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCGTTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATAYTCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTACTCTTGGAATCTGAAAATTGACTTTTTTCAAGCAAGAACTTGACATAAGCAATCCGTTACCTCTCCACACACTTGATGCAATATGGCTGCAGAGTATTGGTTGGTTTTCCGGTCCTGGGATCCTTCGACGTGTAGGTGGAGATGAGAGGAATGTAGTTGAGAAGATTGTCGGTGCACGAGCGACATCTCTCCGTTTCATAGATTCCTTTGTTGAGCTCGCTTGGCTCGAAGACCTTGATATTCTTCTTCGCGAAGAAATCATGCTCTCTTTGAATTTTCGAGAGGCTTCTGGAATTTTTAAACTTGATTTTTTCATTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTCGGGGCCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCCCTTAGATTTCTATTTCAGA</pcr_primer_p1>
		<pcr_primer_p2>TAGAAAAGGTGCAAAGTGTATTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTA</canonical_amplicon>
		<polymorphic_amplicon>ACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATAYTCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7741</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>129473</contig_pos>
        <strand>+</strand>
        <context>TAATCCCATC[A/C]CATCCACCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATC</left_flank>
        <right_flank>CATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACTCAACCTCAGAATAACTAGAAATATACATAGAATATCAGAAAAATAATTTTGAAGCAGAAAAAATCAGACATCCGCTTAGAATAAGAATAATGAATAATTGTGAGCTAGTCGAGGTCTTTTATACCATGAAAAGAGACGCAGAGAATAAATAAAAGGACAATGTTATTGGCGGCGACAGGGTGTCGGTACCCGACAAAGGGATCGAACGGTGGAGAAGAAGAGACGCAGAGAAAATGTTATTTTTACCTTTTTGTCGGGACACCTTTTTGATGCCGACATTTTCCGACAGAAATTCAAAAACGGTTCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCGTTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTACTCTTGGAATCTGAAAATTGACTTTTTTCAAGCAAGAACTTGACATAAGCAATCCGTTACCTCTCCACACACTTGATGCAATATGGCTGCAGAGTATTGGTTGGTTTTCCGGTCCTGGGATCCTTCGACGTGTAGGTGGAGATGAGAGGAATGTAGTTGAGAAGATTGTCGGTGCACGAGCGACATCTCTCCGTTTCATAGATTCCTTTGTTGAGCTCGCTTGGCTCGAAGACCTTGATATTCTTCTTCGCGAAGAAATCATGCTCTCTTTGAATTTTCGAGAGGCTTCTGGAATT</canonical>
            <polymorphic>ACACTCAACCTCAGAATAACTAGAAATATACATAGAATATCAGAAAAATAATTTTGAAGCAGAAAAAATCAGACATCCGCTTAGAATAAGAATAATGAATAATTGTGAGCTAGTCGAGGTCTTTTATACCATGAAAAGAGACGCAGAGAATAAATAAAAGGACAATGTTATTGGCGGCGACAGGGTGTCGGTACCCGACAAAGGGATCGAACGGTGGAGAAGAAGAGACGCAGAGAAAATGTTATTTTTACCTTTTTGTCGGGACACCTTTTTGATGCCGACATTTTCCGACAGAAATTCAAAAACGGTTCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCGTTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCMCATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTACTCTTGGAATCTGAAAATTGACTTTTTTCAAGCAAGAACTTGACATAAGCAATCCGTTACCTCTCCACACACTTGATGCAATATGGCTGCAGAGTATTGGTTGGTTTTCCGGTCCTGGGATCCTTCGACGTGTAGGTGGAGATGAGAGGAATGTAGTTGAGAAGATTGTCGGTGCACGAGCGACATCTCTCCGTTTCATAGATTCCTTTGTTGAGCTCGCTTGGCTCGAAGACCTTGATATTCTTCTTCGCGAAGAAATCATGCTCTCTTTGAATTTTCGAGAGGCTTCTGGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>120 104 80 78 76 64 61 60 57 55 50 36 36 29 23 20 11 7 6 6 6 3 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>120 104 80 78 76 70 61 60 57 55 50 36 36 29 23 20 11 7 6 6 3 2 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAGTATGGGTTTATTCAGGTG</pcr_primer_p1>
		<pcr_primer_p2>CCTGGTCAAGTACTTTGATACTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGG</canonical_amplicon>
		<polymorphic_amplicon>TTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCMCATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7742</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>129359</contig_pos>
        <strand></strand>
        <context>TGTGTTTTAT[A/T]TTATTTTTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAATATTTGCACACATTCACCAGCGCCCTCCAAATCGTTGTGTGTTTTAT</left_flank>
        <right_flank>TTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTG</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCTATTTTATTGAATTTTTGGCCAAAATTTGGGGATTTTTGAGTCAACAGTTTTCAAAAAAAAACTTACATTTTCAGAAAAATAAAAAAGAAAGAAATTCTGGATTGATACACACTCAACCTCAGAATAACTAGAAATATACATAGAATATCAGAAAAATAATTTTGAAGCAGAAAAAATCAGACATCCGCTTAGAATAAGAATAATGAATAATTGTGAGCTAGTCGAGGTCTTTTATACCATGAAAAGAGACGCAGAGAATAAATAAAAGGACAATGTTATTGGCGGCGACAGGGTGTCGGTACCCGACAAAGGGATCGAACGGTGGAGAAGAAGAGACGCAGAGAAAATGTTATTTTTACCTTTTTGTCGGGACACCTTTTTGATGCCGACATTTTCCGACAGAAATTCAAAAACGGTTCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCGTTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTACTCTTGGAATCTGAAAATTGACTTTTTTCAAGCAAGAACTTGACATAAGCAATCCGTTACCTCTCCACACACTTGATGCAATATGGCTGCAGAGTATTGGTTGGTTTTCCGGTCCTGGGATCCTTCGACGTGTAGGTGGAGATGAGAGGAATGTAGTTGAGAAGATTGTCGGTGCACGAGCG</canonical>
            <polymorphic>AATTCTATTTTATTGAATTTTTGGCCAAAATTTGGGGATTTTTGAGTCAACAGTTTTCAAAAAAAAACTTACATTTTCAGAAAAATAAAAAAGAAAGAAATTCTGGATTGATACACACTCAACCTCAGAATAACTAGAAATATACATAGAATATCAGAAAAATAATTTTGAAGCAGAAAAAATCAGACATCCGCTTAGAATAAGAATAATGAATAATTGTGAGCTAGTCGAGGTCTTTTATACCATGAAAAGAGACGCAGAGAATAAATAAAAGGACAATGTTATTGGCGGCGACAGGGTGTCGGTACCCGACAAAGGGATCGAACGGTGGAGAAGAAGAGACGCAGAGAAAATGTTATTTTTACCTTTTTGTCGGGACACCTTTTTGATGCCGACATTTTCCGACAGAAATTCAAAAACGGTTCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCGTTGTGTGTTTTATWTTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTACTCTTGGAATCTGAAAATTGACTTTTTTCAAGCAAGAACTTGACATAAGCAATCCGTTACCTCTCCACACACTTGATGCAATATGGCTGCAGAGTATTGGTTGGTTTTCCGGTCCTGGGATCCTTCGACGTGTAGGTGGAGATGAGAGGAATGTAGTTGAGAAGATTGTCGGTGCACGAGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAGCATATTTTCTCACATTTT</pcr_primer_p1>
		<pcr_primer_p2>TGGTTCATAAAAATAGTTATCCTGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCGTTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCA</canonical_amplicon>
		<polymorphic_amplicon>TCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCGTTGTGTGTTTTATWTTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7744</snp_id>
        <super_contig>c004001137.Contig2</super_contig>
        <contig_pos>46215</contig_pos>
        <strand>+</strand>
        <context>AGGAGAGACT[A/T]GCAAAATTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTATCGAACTTCTGAAACAGTTTCTTTTCTGAAAATGAGCAGGAGAGACT</left_flank>
        <right_flank>GCAAAATTATCAGGTCATAAGAATTAGAATAAAAGTATAATAAAACAGTA</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACTTTTACCCTTTTCTGAATGAATTCTCTTCTTTTTCCCTTCAGTTTACATATTTTATTCACCAATACCGACGCCGCCCAACAACGATGCTATTTGAATTGCCGCCGACGGACTACTGTACCTGCTGATCTAACTCGGTCTCGCCGCGCACCAAGGAAACGCGCCTGATTTTGGGATTATTGGAGCACCCGGGTTTGGAGGACCTGCCGGATCGTTTTAGTTTTTTGCTCCGTCTTGTTTCGATTTCTCCCATTATTATTTTCTAATATTCTGGTGTAAATTTTCTTGTCGGCAGAATGAATCCGGCAACGGATTCTTTCAGGTGTATCGTTGTAGGCATTTATAAGTAATAAATCGGTGTCTTAAATTCTGTGTTTTGTTGTCTTTTTCTCTCTTTAGGTTATCGTGTCTCAAGGGGCCGTACTAATGCTATATGCCTGCAAAATAGTTATCGAACTTCTGAAACAGTTTCTTTTCTGAAAATGAGCAGGAGAGACTAGCAAAATTATCAGGTCATAAGAATTAGAATAAAAGTATAATAAAACAGTACCAGGAAACGCACAACGAAAATATCGAGGTTCTCATCTAGAGTTCTTGAAACGGATTTTTTTCTAGACTTCAAAAAACAGAGCATGAAAAAATCAAAGCATATTAGAGTTGTTTTGACCAACATTGAGATTTTCCAGAGGCTCCAAAATAGTTCAAAACCAGACGTTCCCAAACCGAGGCTTTACAAAACCAGGCCTTTTGCAGCCATGATAATTCGGTACCATTTTTGACTTCGAAAATAGTTTCAGGGTTCTCAAATATTCTTCTAATGATTGAATGCAGCCTTTTGTGTTTTGATTGTGTTTTGAATTCCAGACTGAATTCGCTCCAAAAATGCATATAAACACCCTGAAGCCATTTTTGCCTCAAAATAGGGGCTTTGCGGCGTTTGCGAAATGCCCGGTTTTGAAATGTTTCGGTTTTAAAAAGTCCGGTTTTGAGCCGTTCCAG</canonical>
            <polymorphic>GACTTTTACCCTTTTCTGAATGAATTCTCTTCTTTTTCCCTTCAGTTTACATATTTTATTCACCAATACCGACGCCGCCCAACAACGATGCTATTTGAATTGCCGCCGACGGACTACTGTACCTGCTGATCTAACTCGGTCTCGCCGCGCACCAAGGAAACGCGCCTGATTTTGGGATTATTGGAGCACCCGGGTTTGGAGGACCTGCCGGATCGTTTTAGTTTTTTGCTCCGTCTTGTTTCGATTTCTCCCATTATTATTTTCTAATATTCTGGTGTAAATTTTCTTGTCGGCAGAATGAATCCGGCAACGGATTCTTTCAGGTGTATCGTTGTAGGCATTTATAAGTAATAAATCGGTGTCTTAAATTCTGTGTTTTGTTGTCTTTTTCTCTCTTTAGGTTATCGTGTCTCAAGGGGCCGTACTAATGCTATATGCCTGCAAAATAGTTATCGAACTTCTGAAACAGTTTCTTTTCTGAAAATGAGCAGGAGAGACTWGCAAAATTATCAGGTCATAAGAATTAGAATAAAAGTATAATAAAACAGTACCAGGAAACGCACAACGAAAATATCGAGGTTCTCATCTAGAGTTCTTGAAACGGATTTTTTTCTAGACTTCAAAAAACAGAGCATGAAAAAATCAAAGCATATTAGAGTTGTTTTGACCAACATTGAGATTTTCCAGAGGCTCCAAAATAGTTCAAAACCAGACGTTCCCAAACCGAGGCTTTACAAAACCAGGCCTTTTGCAGCCATGATAATTCGGTACCATTTTTGACTTCGAAAATAGTTTCAGGGTTCTCAAATATTCTTCTAATGATTGAATGCAGCCTTTTGTGTTTTGATTGTGTTTTGAATTCCAGACTGAATTCGCTCCAAAAATGCATATAAACACCCTGAAGCCATTTTTGCCTCAAAATAGGGGCTTTGCGGCGTTTGCGAAATGCCCGGTTTTGAAATGTTTCGGTTTTAAAAAGTCCGGTTTTGAGCCGTTCCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>498 387 89 26</canonical_bands>
                <polymorphic_bands>587 387 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTTCAGGTGTATCGTTGTA</pcr_primer_p1>
		<pcr_primer_p2>CGTTTCCTGGTACTGTTTTATTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTTCAGGTGTATCGTTGTAGGCATTTATAAGTAATAAATCGGTGTCTTAAATTCTGTGTTTTGTTGTCTTTTTCTCTCTTTAGGTTATCGTGTCTCAAGGGGCCGTACTAATGCTATATGCCTGCAAAATAGTTATCGAACTTCTGAAACAGTTTCTTTTCTGAAAATGAGCAGGAGAGACTAGCAAAATTATCAGGTCATAAGAATTAGAATAAAAGTATAATAAAACAGTACCAGGAAACG</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTTCAGGTGTATCGTTGTAGGCATTTATAAGTAATAAATCGGTGTCTTAAATTCTGTGTTTTGTTGTCTTTTTCTCTCTTTAGGTTATCGTGTCTCAAGGGGCCGTACTAATGCTATATGCCTGCAAAATAGTTATCGAACTTCTGAAACAGTTTCTTTTCTGAAAATGAGCAGGAGAGACTWGCAAAATTATCAGGTCATAAGAATTAGAATAAAAGTATAATAAAACAGTACCAGGAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7745</snp_id>
        <super_contig>c004001137.Contig2</super_contig>
        <contig_pos>48842</contig_pos>
        <strand>+</strand>
        <context>GTTATAGAAA[A/G]TGTCGTGAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTCGAAAATTTGTTAGATTTTGGTTCCGCTTTTTAGGTTATAGAAA</left_flank>
        <right_flank>TGTCGTGAGAAGGTTTTAGGAGAAGCCATTTTTGGAAATATAACAAGTAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAACCCATTTTTGAAAACTTTGACATGATCAATCCTCAAACGTGAAAAATTTAATAATCAAAAAAAATTGCGGTAGAGCGCATTCGCAACCTCCTGATACATAAAAATTAAAAAGAATTCGAAAAATTGTGGTAGAGCGCCTTTCCTCCATCAACTACGTGAAAATTTAAAAAACCGAGAAATGAGTAAAAGTGCAAGATGTGACACCTAGCATCTTGGGATCTCTCTCTCTATGAGGAACACAAAGGAATACATTATATACCCATGGACTCACTTACATGACAAAACGAAAGAAAAAACTAGTGGCGAGAAAAGAAATGGAAGAATATGTAGGTGAGCATAAAAATAATATCTTCCTTCATGTTTTCTCTATTTCGGGAGGGTCCCGTATGTGCAATTTTATGGGGTTATCGTGTGTATTCGATTTTACTTGTGTTTTGCTCCATTTTTTTTCGAAAATTTGTTAGATTTTGGTTCCGCTTTTTAGGTTATAGAAAGTGTCGTGAGAAGGTTTTAGGAGAAGCCATTTTTGGAAATATAACAAGTAGTGATTTTCAAAAGTTTTAATTTTGGGAAAAATATTCAGAAAGTGTTAATATTTCTGTTATATTTGTTGAAAAAACACGTTGCTCCCAAAAACTTAACGGTCCATCTTTTGGGAGATTCAAAAGATTCACGTGGCTCACAAAAATTTTTGAAATTTCAGTACTTTGATGTGAAAATTAAAACTTTTGAAATTCACTACTTGTTATATGACTGATTTTGAACTTATTGGGAATGCCATGAGATGTTTTAAATATTATACTGCTACAAAAAAATTAGGAGCAGGGAAGTGAAACACCTGTGGATGTGGCTGAAGACCGCATTACGACAACTACCGTCACCTAAAGATTGGTATCCTTTTGTTTAGATACATTTTCAGATTTTCCACTGTTTCAAATAGATTTATTAATCATAAGGATGAAATTAGAATTGATATCGCATACATTTCAAGACCT</canonical>
            <polymorphic>TGAAACCCATTTTTGAAAACTTTGACATGATCAATCCTCAAACGTGAAAAATTTAATAATCAAAAAAAATTGCGGTAGAGCGCATTCGCAACCTCCTGATACATAAAAATTAAAAAGAATTCGAAAAATTGTGGTAGAGCGCCTTTCCTCCATCAACTACGTGAAAATTTAAAAAACCGAGAAATGAGTAAAAGTGCAAGATGTGACACCTAGCATCTTGGGATCTCTCTCTCTATGAGGAACACAAAGGAATACATTATATACCCATGGACTCACTTACATGACAAAACGAAAGAAAAAACTAGTGGCGAGAAAAGAAATGGAAGAATATGTAGGTGAGCATAAAAATAATATCTTCCTTCATGTTTTCTCTATTTCGGGAGGGTCCCGTATGTGCAATTTTATGGGGTTATCGTGTGTATTCGATTTTACTTGTGTTTTGCTCCATTTTTTTTCGAAAATTTGTTAGATTTTGGTTCCGCTTTTTAGGTTATAGAAARTGTCGTGAGAAGGTTTTAGGAGAAGCCATTTTTGGAAATATAACAAGTAGTGATTTTCAAAAGTTTTAATTTTGGGAAAAATATTCAGAAAGTGTTAATATTTCTGTTATATTTGTTGAAAAAACACGTTGCTCCCAAAAACTTAACGGTCCATCTTTTGGGAGATTCAAAAGATTCACGTGGCTCACAAAAATTTTTGAAATTTCAGTACTTTGATGTGAAAATTAAAACTTTTGAAATTCACTACTTGTTATATGACTGATTTTGAACTTATTGGGAATGCCATGAGATGTTTTAAATATTATACTGCTACAAAAAAATTAGGAGCAGGGAAGTGAAACACCTGTGGATGTGGCTGAAGACCGCATTACGACAACTACCGTCACCTAAAGATTGGTATCCTTTTGTTTAGATACATTTTCAGATTTTCCACTGTTTCAAATAGATTTATTAATCATAAGGATGAAATTAGAATTGATATCGCATACATTTCAAGACCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>94 87 68 65 58 52 47 46 45 42 36 33 33 32 32 31 31 31 30 23 21 18 9 6 6 5 5 5 4 3 2</canonical_bands>
                <polymorphic_bands>94 87 70 68 58 52 47 46 45 42 36 33 33 32 32 31 31 31 30 23 21 18 9 6 6 5 5 4 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTGTTTTGCTCCATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CCCAATAAGTTCAAAATCAGTC</pcr_primer_p2>
		<pcr_amplicon_size>346</pcr_amplicon_size>
		<canonical_amplicon>TTGTGTTTTGCTCCATTTTTTTTCGAAAATTTGTTAGATTTTGGTTCCGCTTTTTAGGTTATAGAAAGTGTCGTGAGAAGGTTTTAGGAGAAGCCATTTTTGGAAATATAACAAGTAGTGATTTTCAAAAGTTTTAATTTTGGGAAAAATATTCAGAAAGTGTTAATATTTCTGTTATATTTGTTGAAAAAACACGTTGCTCCCAAAAACTTAACGGTCCATCTTTTGGGAGATTCAAAAGATTCACGTGGCTCACAAAAATTTTTGAAATTTCAGTACTTTGATGTGAAAATTAAAACTTTTGAAATTCACTACTTGTTATATGACTGATTTTGAACTTATTGGG</canonical_amplicon>
		<polymorphic_amplicon>TTGTGTTTTGCTCCATTTTTTTTCGAAAATTTGTTAGATTTTGGTTCCGCTTTTTAGGTTATAGAAARTGTCGTGAGAAGGTTTTAGGAGAAGCCATTTTTGGAAATATAACAAGTAGTGATTTTCAAAAGTTTTAATTTTGGGAAAAATATTCAGAAAGTGTTAATATTTCTGTTATATTTGTTGAAAAAACACGTTGCTCCCAAAAACTTAACGGTCCATCTTTTGGGAGATTCAAAAGATTCACGTGGCTCACAAAAATTTTTGAAATTTCAGTACTTTGATGTGAAAATTAAAACTTTTGAAATTCACTACTTGTTATATGACTGATTTTGAACTTATTGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7746</snp_id>
        <super_contig>c004001137.Contig2</super_contig>
        <contig_pos>48682</contig_pos>
        <strand>+</strand>
        <context>ATGTAGGTGA[A/G]CATAAAAATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAAAGAAAAAACTAGTGGCGAGAAAAGAAATGGAAGAATATGTAGGTGA</left_flank>
        <right_flank>CATAAAAATAATATCTTCCTTCATGTTTTCTCTATTTCGGGAGGGTCCCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGAGAGATATCAAAAATTTTTTCAACTCATGAAATGTAGGTGATATTATGACAAACATTTTATCAGTTGATATATTTTTAATATCTTTTCTGACAAACTCTTCTGACTTGTGAGAACGGAGATAATTGAGGTTAAGTATATCAGCTAGCTTATCGAGTTGAAACCCATTTTTGAAAACTTTGACATGATCAATCCTCAAACGTGAAAAATTTAATAATCAAAAAAAATTGCGGTAGAGCGCATTCGCAACCTCCTGATACATAAAAATTAAAAAGAATTCGAAAAATTGTGGTAGAGCGCCTTTCCTCCATCAACTACGTGAAAATTTAAAAAACCGAGAAATGAGTAAAAGTGCAAGATGTGACACCTAGCATCTTGGGATCTCTCTCTCTATGAGGAACACAAAGGAATACATTATATACCCATGGACTCACTTACATGACAAAACGAAAGAAAAAACTAGTGGCGAGAAAAGAAATGGAAGAATATGTAGGTGAGCATAAAAATAATATCTTCCTTCATGTTTTCTCTATTTCGGGAGGGTCCCGTATGTGCAATTTTATGGGGTTATCGTGTGTATTCGATTTTACTTGTGTTTTGCTCCATTTTTTTTCGAAAATTTGTTAGATTTTGGTTCCGCTTTTTAGGTTATAGAAAGTGTCGTGAGAAGGTTTTAGGAGAAGCCATTTTTGGAAATATAACAAGTAGTGATTTTCAAAAGTTTTAATTTTGGGAAAAATATTCAGAAAGTGTTAATATTTCTGTTATATTTGTTGAAAAAACACGTTGCTCCCAAAAACTTAACGGTCCATCTTTTGGGAGATTCAAAAGATTCACGTGGCTCACAAAAATTTTTGAAATTTCAGTACTTTGATGTGAAAATTAAAACTTTTGAAATTCACTACTTGTTATATGACTGATTTTGAACTTATTGGGAATGCCATGAGATGTTTTAAATATTATACTGCTACAAAAAAATTAGGAGCAGGGAAGTGAAA</canonical>
            <polymorphic>CATGAGAGATATCAAAAATTTTTTCAACTCATGAAATGTAGGTGATATTATGACAAACATTTTATCAGTTGATATATTTTTAATATCTTTTCTGACAAACTCTTCTGACTTGTGAGAACGGAGATAATTGAGGTTAAGTATATCAGCTAGCTTATCGAGTTGAAACCCATTTTTGAAAACTTTGACATGATCAATCCTCAAACGTGAAAAATTTAATAATCAAAAAAAATTGCGGTAGAGCGCATTCGCAACCTCCTGATACATAAAAATTAAAAAGAATTCGAAAAATTGTGGTAGAGCGCCTTTCCTCCATCAACTACGTGAAAATTTAAAAAACCGAGAAATGAGTAAAAGTGCAAGATGTGACACCTAGCATCTTGGGATCTCTCTCTCTATGAGGAACACAAAGGAATACATTATATACCCATGGACTCACTTACATGACAAAACGAAAGAAAAAACTAGTGGCGAGAAAAGAAATGGAAGAATATGTAGGTGARCATAAAAATAATATCTTCCTTCATGTTTTCTCTATTTCGGGAGGGTCCCGTATGTGCAATTTTATGGGGTTATCGTGTGTATTCGATTTTACTTGTGTTTTGCTCCATTTTTTTTCGAAAATTTGTTAGATTTTGGTTCCGCTTTTTAGGTTATAGAAAGTGTCGTGAGAAGGTTTTAGGAGAAGCCATTTTTGGAAATATAACAAGTAGTGATTTTCAAAAGTTTTAATTTTGGGAAAAATATTCAGAAAGTGTTAATATTTCTGTTATATTTGTTGAAAAAACACGTTGCTCCCAAAAACTTAACGGTCCATCTTTTGGGAGATTCAAAAGATTCACGTGGCTCACAAAAATTTTTGAAATTTCAGTACTTTGATGTGAAAATTAAAACTTTTGAAATTCACTACTTGTTATATGACTGATTTTGAACTTATTGGGAATGCCATGAGATGTTTTAAATATTATACTGCTACAAAAAAATTAGGAGCAGGGAAGTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACCGAGAAATGAGTAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>ATACACACGATAACCCCATAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAACCGAGAAATGAGTAAAAGTGCAAGATGTGACACCTAGCATCTTGGGATCTCTCTCTCTATGAGGAACACAAAGGAATACATTATATACCCATGGACTCACTTACATGACAAAACGAAAGAAAAAACTAGTGGCGAGAAAAGAAATGGAAGAATATGTAGGTGAGCATAAAAATAATATCTTCCTTCATGTTTTCTCTATTTCGGGAGGGTCCCGTATGTGCAATTTTATGGGGTTATCGTGTGTAT</canonical_amplicon>
		<polymorphic_amplicon>AAAACCGAGAAATGAGTAAAAGTGCAAGATGTGACACCTAGCATCTTGGGATCTCTCTCTCTATGAGGAACACAAAGGAATACATTATATACCCATGGACTCACTTACATGACAAAACGAAAGAAAAAACTAGTGGCGAGAAAAGAAATGGAAGAATATGTAGGTGARCATAAAAATAATATCTTCCTTCATGTTTTCTCTATTTCGGGAGGGTCCCGTATGTGCAATTTTATGGGGTTATCGTGTGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7747</snp_id>
        <super_contig>c004001137.Contig2</super_contig>
        <contig_pos>48459</contig_pos>
        <strand>+</strand>
        <context>AAATTAAAAA[A/G]AATTCGAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTGCGGTAGAGCGCATTCGCAACCTCCTGATACATAAAAATTAAAAA</left_flank>
        <right_flank>AATTCGAAAAATTGTGGTAGAGCGCCTTTCCTCCATCAACTACGTGAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGCAGGAGCACACTGGAAATTAGGAATAGGAAAGAGCAAAGATTCAAAATTGAGATTCTAAACATATGTAAAACTTTTTTTTGCTTCAAAATCAAGGTTAGTAAGCGCGCGTATTTTTTACAGTTAATTTGAGTATTTGAATTGGACTTTGAAAAATACTAAAAATTCTCTAAAAAAACGCTACTCGTTTTTCAACCTTTGAGATCAATTATCACAACTTTCATGAGAGATATCAAAAATTTTTTCAACTCATGAAATGTAGGTGATATTATGACAAACATTTTATCAGTTGATATATTTTTAATATCTTTTCTGACAAACTCTTCTGACTTGTGAGAACGGAGATAATTGAGGTTAAGTATATCAGCTAGCTTATCGAGTTGAAACCCATTTTTGAAAACTTTGACATGATCAATCCTCAAACGTGAAAAATTTAATAATCAAAAAAAATTGCGGTAGAGCGCATTCGCAACCTCCTGATACATAAAAATTAAAAAGAATTCGAAAAATTGTGGTAGAGCGCCTTTCCTCCATCAACTACGTGAAAATTTAAAAAACCGAGAAATGAGTAAAAGTGCAAGATGTGACACCTAGCATCTTGGGATCTCTCTCTCTATGAGGAACACAAAGGAATACATTATATACCCATGGACTCACTTACATGACAAAACGAAAGAAAAAACTAGTGGCGAGAAAAGAAATGGAAGAATATGTAGGTGAGCATAAAAATAATATCTTCCTTCATGTTTTCTCTATTTCGGGAGGGTCCCGTATGTGCAATTTTATGGGGTTATCGTGTGTATTCGATTTTACTTGTGTTTTGCTCCATTTTTTTTCGAAAATTTGTTAGATTTTGGTTCCGCTTTTTAGGTTATAGAAAGTGTCGTGAGAAGGTTTTAGGAGAAGCCATTTTTGGAAATATAACAAGTAGTGATTTTCAAAAGTTTTAATTTTGGGAAAAATATTCAGAAAGTGTTAATATTTCTGTTATATTTGTT</canonical>
            <polymorphic>GGAGCAGGAGCACACTGGAAATTAGGAATAGGAAAGAGCAAAGATTCAAAATTGAGATTCTAAACATATGTAAAACTTTTTTTTGCTTCAAAATCAAGGTTAGTAAGCGCGCGTATTTTTTACAGTTAATTTGAGTATTTGAATTGGACTTTGAAAAATACTAAAAATTCTCTAAAAAAACGCTACTCGTTTTTCAACCTTTGAGATCAATTATCACAACTTTCATGAGAGATATCAAAAATTTTTTCAACTCATGAAATGTAGGTGATATTATGACAAACATTTTATCAGTTGATATATTTTTAATATCTTTTCTGACAAACTCTTCTGACTTGTGAGAACGGAGATAATTGAGGTTAAGTATATCAGCTAGCTTATCGAGTTGAAACCCATTTTTGAAAACTTTGACATGATCAATCCTCAAACGTGAAAAATTTAATAATCAAAAAAAATTGCGGTAGAGCGCATTCGCAACCTCCTGATACATAAAAATTAAAAARAATTCGAAAAATTGTGGTAGAGCGCCTTTCCTCCATCAACTACGTGAAAATTTAAAAAACCGAGAAATGAGTAAAAGTGCAAGATGTGACACCTAGCATCTTGGGATCTCTCTCTCTATGAGGAACACAAAGGAATACATTATATACCCATGGACTCACTTACATGACAAAACGAAAGAAAAAACTAGTGGCGAGAAAAGAAATGGAAGAATATGTAGGTGAGCATAAAAATAATATCTTCCTTCATGTTTTCTCTATTTCGGGAGGGTCCCGTATGTGCAATTTTATGGGGTTATCGTGTGTATTCGATTTTACTTGTGTTTTGCTCCATTTTTTTTCGAAAATTTGTTAGATTTTGGTTCCGCTTTTTAGGTTATAGAAAGTGTCGTGAGAAGGTTTTAGGAGAAGCCATTTTTGGAAATATAACAAGTAGTGATTTTCAAAAGTTTTAATTTTGGGAAAAATATTCAGAAAGTGTTAATATTTCTGTTATATTTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>294 193 165 158 74 68 48</canonical_bands>
                <polymorphic_bands>294 193 165 158 116 74</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTGAAAACTTTGACATGAT</pcr_primer_p1>
		<pcr_primer_p2>TAATGTATTCCTTTGTGTTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTGAAAACTTTGACATGATCAATCCTCAAACGTGAAAAATTTAATAATCAAAAAAAATTGCGGTAGAGCGCATTCGCAACCTCCTGATACATAAAAATTAAAAAGAATTCGAAAAATTGTGGTAGAGCGCCTTTCCTCCATCAACTACGTGAAAATTTAAAAAACCGAGAAATGAGTAAAAGTGCAAGATGTGACACCTAGCATCTTGGGATCTCTCTCTCTATGAGGAACACAAAGGAATACATTA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTGAAAACTTTGACATGATCAATCCTCAAACGTGAAAAATTTAATAATCAAAAAAAATTGCGGTAGAGCGCATTCGCAACCTCCTGATACATAAAAATTAAAAARAATTCGAAAAATTGTGGTAGAGCGCCTTTCCTCCATCAACTACGTGAAAATTTAAAAAACCGAGAAATGAGTAAAAGTGCAAGATGTGACACCTAGCATCTTGGGATCTCTCTCTCTATGAGGAACACAAAGGAATACATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7748</snp_id>
        <super_contig>c004001145.Contig3</super_contig>
        <contig_pos>3887</contig_pos>
        <strand>+</strand>
        <context>TTTCCTTTTT[A/G]CTTCATTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACTTTTGTATACCGATTATAAATAATCTTGTGCTGCTCTTTTCCTTTTT</left_flank>
        <right_flank>CTTCATTTCTTCTTCACTTCACCGCGTCGTCTTCTTCATCTCCTCTCCTG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTGAGCATTATTCTGAACTCATTAGCTGCTGTTCCCAAGAAAATTGGTATAGCATTTTGAGAAGAAAGATTGATACTGGTGTGAACCCGTCGTTTAAAGGGGGTTGATGGAAGAAAAGAAAAAATAAAGGAAACAACAGATTAGCCGCTGTTAAGTGGTTTGTTTCTTTTCTTTTTAATTTGATTTAATTGAAATTTGACGACGAGAAATCTAACGTTTTGGCGGCGTTTTGTATTTCAGAAGGCGTGACGATGCTTTTTTTTGTAAAAAGCAATCATAAACACAGTACGTTTTATGAAATGAAGTAGATGAAGAAGTCAATCTTGTTTCCTAAAGCTTTTTGTACGATCCAGATTAGTGTGTTGGCGTCGTAATTGAAGCCCTTGGACGCCCCGGATGCTTTTCCATTTCGTAGTTTTCAACCACTTCCGTTTCTCTTCCTTTCATAACTTTTGTATACCGATTATAAATAATCTTGTGCTGCTCTTTTCCTTTTTGCTTCATTTCTTCTTCACTTCACCGCGTCGTCTTCTTCATCTCCTCTCCTGGGTTTTCCGTCTCTAGGTAATTCCCCATTGAGTTGACGACGAGAAGAAGAATCAGAAGAAGACGACTGGGACGACGGAAAAGAAGGATGAAAAAGAGCAAGCGGAAGAGGCGGCGGCTAGTAGAAAACGACGCGTCATTTTGGTCCGCCGCTTTTGGTGGTGGTAGGGAGATGGTGTAGATGATGGTGCCAGCGGTTGTGGGGTGAAGCAGGAGGCGTTACCCTGAAGACGGGTGGAGGTGGAGTCTGCAGAGAAAAAGAGCGTGAAATTCAGAGAAAGCAATAGAGAAGAGAGAGAGAGAGGGATCGCGCGCGGAGGGTCTAGAGAGAAGGCGCACAAGAGTGTTTGGGGCGAGAGACCTTCTTCTGGTTGCTGCTACTGCTGCTGTGCCTCTCTTTCCTCGTTTCCACTATTGCCAGAGAGCCTTCTCAGTGGACCCGCCCCTCCTTA</canonical>
            <polymorphic>AAGTGAGCATTATTCTGAACTCATTAGCTGCTGTTCCCAAGAAAATTGGTATAGCATTTTGAGAAGAAAGATTGATACTGGTGTGAACCCGTCGTTTAAAGGGGGTTGATGGAAGAAAAGAAAAAATAAAGGAAACAACAGATTAGCCGCTGTTAAGTGGTTTGTTTCTTTTCTTTTTAATTTGATTTAATTGAAATTTGACGACGAGAAATCTAACGTTTTGGCGGCGTTTTGTATTTCAGAAGGCGTGACGATGCTTTTTTTTGTAAAAAGCAATCATAAACACAGTACGTTTTATGAAATGAAGTAGATGAAGAAGTCAATCTTGTTTCCTAAAGCTTTTTGTACGATCCAGATTAGTGTGTTGGCGTCGTAATTGAAGCCCTTGGACGCCCCGGATGCTTTTCCATTTCGTAGTTTTCAACCACTTCCGTTTCTCTTCCTTTCATAACTTTTGTATACCGATTATAAATAATCTTGTGCTGCTCTTTTCCTTTTTRCTTCATTTCTTCTTCACTTCACCGCGTCGTCTTCTTCATCTCCTCTCCTGGGTTTTCCGTCTCTAGGTAATTCCCCATTGAGTTGACGACGAGAAGAAGAATCAGAAGAAGACGACTGGGACGACGGAAAAGAAGGATGAAAAAGAGCAAGCGGAAGAGGCGGCGGCTAGTAGAAAACGACGCGTCATTTTGGTCCGCCGCTTTTGGTGGTGGTAGGGAGATGGTGTAGATGATGGTGCCAGCGGTTGTGGGGTGAAGCAGGAGGCGTTACCCTGAAGACGGGTGGAGGTGGAGTCTGCAGAGAAAAAGAGCGTGAAATTCAGAGAAAGCAATAGAGAAGAGAGAGAGAGAGGGATCGCGCGCGGAGGGTCTAGAGAGAAGGCGCACAAGAGTGTTTGGGGCGAGAGACCTTCTTCTGGTTGCTGCTACTGCTGCTGTGCCTCTCTTTCCTCGTTTCCACTATTGCCAGAGAGCCTTCTCAGTGGACCCGCCCCTCCTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCTAAAGCTTTTTGTACGAT</pcr_primer_p1>
		<pcr_primer_p2>CAATGGGGAATTACCTAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCCTAAAGCTTTTTGTACGATCCAGATTAGTGTGTTGGCGTCGTAATTGAAGCCCTTGGACGCCCCGGATGCTTTTCCATTTCGTAGTTTTCAACCACTTCCGTTTCTCTTCCTTTCATAACTTTTGTATACCGATTATAAATAATCTTGTGCTGCTCTTTTCCTTTTTGCTTCATTTCTTCTTCACTTCACCGCGTCGTCTTCTTCATCTCCTCTCCTGGGTTTTCCGTCTCTAGGTAATTCCCCATTG</canonical_amplicon>
		<polymorphic_amplicon>TTCCTAAAGCTTTTTGTACGATCCAGATTAGTGTGTTGGCGTCGTAATTGAAGCCCTTGGACGCCCCGGATGCTTTTCCATTTCGTAGTTTTCAACCACTTCCGTTTCTCTTCCTTTCATAACTTTTGTATACCGATTATAAATAATCTTGTGCTGCTCTTTTCCTTTTTRCTTCATTTCTTCTTCACTTCACCGCGTCGTCTTCTTCATCTCCTCTCCTGGGTTTTCCGTCTCTAGGTAATTCCCCATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7749</snp_id>
        <super_contig>c004001145.Contig3</super_contig>
        <contig_pos>3935</contig_pos>
        <strand>+</strand>
        <context>ATCTCCTCTC[C/T]TGGGTTTTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGCTTCATTTCTTCTTCACTTCACCGCGTCGTCTTCTTCATCTCCTCTC</left_flank>
        <right_flank>TGGGTTTTCCGTCTCTAGGTAATTCCCCATTGAGTTGACGACGAGAAGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATAGCATTTTGAGAAGAAAGATTGATACTGGTGTGAACCCGTCGTTTAAAGGGGGTTGATGGAAGAAAAGAAAAAATAAAGGAAACAACAGATTAGCCGCTGTTAAGTGGTTTGTTTCTTTTCTTTTTAATTTGATTTAATTGAAATTTGACGACGAGAAATCTAACGTTTTGGCGGCGTTTTGTATTTCAGAAGGCGTGACGATGCTTTTTTTTGTAAAAAGCAATCATAAACACAGTACGTTTTATGAAATGAAGTAGATGAAGAAGTCAATCTTGTTTCCTAAAGCTTTTTGTACGATCCAGATTAGTGTGTTGGCGTCGTAATTGAAGCCCTTGGACGCCCCGGATGCTTTTCCATTTCGTAGTTTTCAACCACTTCCGTTTCTCTTCCTTTCATAACTTTTGTATACCGATTATAAATAATCTTGTGCTGCTCTTTTCCTTTTTGCTTCATTTCTTCTTCACTTCACCGCGTCGTCTTCTTCATCTCCTCTCCTGGGTTTTCCGTCTCTAGGTAATTCCCCATTGAGTTGACGACGAGAAGAAGAATCAGAAGAAGACGACTGGGACGACGGAAAAGAAGGATGAAAAAGAGCAAGCGGAAGAGGCGGCGGCTAGTAGAAAACGACGCGTCATTTTGGTCCGCCGCTTTTGGTGGTGGTAGGGAGATGGTGTAGATGATGGTGCCAGCGGTTGTGGGGTGAAGCAGGAGGCGTTACCCTGAAGACGGGTGGAGGTGGAGTCTGCAGAGAAAAAGAGCGTGAAATTCAGAGAAAGCAATAGAGAAGAGAGAGAGAGAGGGATCGCGCGCGGAGGGTCTAGAGAGAAGGCGCACAAGAGTGTTTGGGGCGAGAGACCTTCTTCTGGTTGCTGCTACTGCTGCTGTGCCTCTCTTTCCTCGTTTCCACTATTGCCAGAGAGCCTTCTCAGTGGACCCGCCCCTCCTTACTTGTCCCATCACCCCTTTTTCGGCTCGGCTCGATTTCGGGTATCAAT</canonical>
            <polymorphic>GTATAGCATTTTGAGAAGAAAGATTGATACTGGTGTGAACCCGTCGTTTAAAGGGGGTTGATGGAAGAAAAGAAAAAATAAAGGAAACAACAGATTAGCCGCTGTTAAGTGGTTTGTTTCTTTTCTTTTTAATTTGATTTAATTGAAATTTGACGACGAGAAATCTAACGTTTTGGCGGCGTTTTGTATTTCAGAAGGCGTGACGATGCTTTTTTTTGTAAAAAGCAATCATAAACACAGTACGTTTTATGAAATGAAGTAGATGAAGAAGTCAATCTTGTTTCCTAAAGCTTTTTGTACGATCCAGATTAGTGTGTTGGCGTCGTAATTGAAGCCCTTGGACGCCCCGGATGCTTTTCCATTTCGTAGTTTTCAACCACTTCCGTTTCTCTTCCTTTCATAACTTTTGTATACCGATTATAAATAATCTTGTGCTGCTCTTTTCCTTTTTGCTTCATTTCTTCTTCACTTCACCGCGTCGTCTTCTTCATCTCCTCTCYTGGGTTTTCCGTCTCTAGGTAATTCCCCATTGAGTTGACGACGAGAAGAAGAATCAGAAGAAGACGACTGGGACGACGGAAAAGAAGGATGAAAAAGAGCAAGCGGAAGAGGCGGCGGCTAGTAGAAAACGACGCGTCATTTTGGTCCGCCGCTTTTGGTGGTGGTAGGGAGATGGTGTAGATGATGGTGCCAGCGGTTGTGGGGTGAAGCAGGAGGCGTTACCCTGAAGACGGGTGGAGGTGGAGTCTGCAGAGAAAAAGAGCGTGAAATTCAGAGAAAGCAATAGAGAAGAGAGAGAGAGAGGGATCGCGCGCGGAGGGTCTAGAGAGAAGGCGCACAAGAGTGTTTGGGGCGAGAGACCTTCTTCTGGTTGCTGCTACTGCTGCTGTGCCTCTCTTTCCTCGTTTCCACTATTGCCAGAGAGCCTTCTCAGTGGACCCGCCCCTCCTTACTTGTCCCATCACCCCTTTTTCGGCTCGGCTCGATTTCGGGTATCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>500 347 153</canonical_bands>
                <polymorphic_bands>653 347</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>501 336 154 9</canonical_bands>
                <polymorphic_bands>655 336 9</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAATCTTGTGCTGCTCTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TCTACACCATCTCCCTACCA</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>ATAATCTTGTGCTGCTCTTTTCCTTTTTGCTTCATTTCTTCTTCACTTCACCGCGTCGTCTTCTTCATCTCCTCTCCTGGGTTTTCCGTCTCTAGGTAATTCCCCATTGAGTTGACGACGAGAAGAAGAATCAGAAGAAGACGACTGGGACGACGGAAAAGAAGGATGAAAAAGAGCAAGCGGAAGAGGCGGCGGCTAGTAGAAAACGACGCGTCATTTTGGTCCGCCGCTTTTGGTGGTGGTAGGGAGATGGTGTAGA</canonical_amplicon>
		<polymorphic_amplicon>ATAATCTTGTGCTGCTCTTTTCCTTTTTGCTTCATTTCTTCTTCACTTCACCGCGTCGTCTTCTTCATCTCCTCTCYTGGGTTTTCCGTCTCTAGGTAATTCCCCATTGAGTTGACGACGAGAAGAAGAATCAGAAGAAGACGACTGGGACGACGGAAAAGAAGGATGAAAAAGAGCAAGCGGAAGAGGCGGCGGCTAGTAGAAAACGACGCGTCATTTTGGTCCGCCGCTTTTGGTGGTGGTAGGGAGATGGTGTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7790</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>176915</contig_pos>
        <strand>+</strand>
        <context>AGAAGCTCAC[C/T]TTATGATGAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCAACACCTCAATGTCAACTCACCGTGTTTGCTTTGTTAGAAGCTCAC</left_flank>
        <right_flank>TTATGATGACACTTTGAGCTCAATTATCTCGGTTTCTTCAAAAGATATCA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTCTGAGTTTTTGATCTGGAAGAAATTTTCAAAAAGTTAAAAACATATGAAATGATTCTATTTTCATTTACAAATAATTTTCCAGTATAAAGATTCTGATATCTTTTTCAAAAATCGAGATACCAAATTTCCTCTGTGCCACTTCGACCACCAACTTTGAGCTCAATTATCTCGGTTCCTATGAGAGATATCAAAAATCTGTCAACTAATAAAATTTTTCTCATAAGATCACCAATATTTTATCAGTTGACAAAACTTTGATATCTCTCATAAGAAGCGAGATAATTGAGCTCAAAGTGCACGGACCTTTTTGAGTGATTTTATCCATTTTGAATACAAAATCTCAGGAAAAATGTCAGTGCCTTACTAGAACTTTCCAGAAAAACCAGTTTAGTTCTTATTGATGCCATAAATTTCAGAGTAGATTTCCAGAAACCTCCAGAACATTTTCAACACCTCAATGTCAACTCACCGTGTTTGCTTTGTTAGAAGCTCACCTTATGATGACACTTTGAGCTCAATTATCTCGGTTTCTTCAAAAGATATCAAGCAGCATTCAACTAATAAACTGTTTATCATAAAATGAGAAATAATCAGTTGACAAGTTTTTGATATCTTTCACAGGATTCAAGATAACTGAGCTCAAAGTGAACTTAACCGGAGGGCTTCTTTCAGAGCAAATATGGTAAAATTTCAAAAATCCAAACTCCTGTAGTACGGTACTTCCTAATAACTCAACTCTTTCTAACCCCTGACTCATTCCCAAAGCGGCTTAGTAGTTTCTAAAAGTTGTATATGAAAACATAGAACATTCAGAGACACATATATATTCATAATAATATTTTGTTTTGATATCCTTTTGCCTGCCAACTATGTCTCCTATTTTTTCCCGAAGCATAATCGGATTAGTGTCTTTCTTCTCCATCTTCTTCTTCTTCTTTCTCCCTTCCAAAAATGCCCCCAACGCGTGTATCACATTATCATTCGGCGTTGCGTGC</canonical>
            <polymorphic>GTCTCTGAGTTTTTGATCTGGAAGAAATTTTCAAAAAGTTAAAAACATATGAAATGATTCTATTTTCATTTACAAATAATTTTCCAGTATAAAGATTCTGATATCTTTTTCAAAAATCGAGATACCAAATTTCCTCTGTGCCACTTCGACCACCAACTTTGAGCTCAATTATCTCGGTTCCTATGAGAGATATCAAAAATCTGTCAACTAATAAAATTTTTCTCATAAGATCACCAATATTTTATCAGTTGACAAAACTTTGATATCTCTCATAAGAAGCGAGATAATTGAGCTCAAAGTGCACGGACCTTTTTGAGTGATTTTATCCATTTTGAATACAAAATCTCAGGAAAAATGTCAGTGCCTTACTAGAACTTTCCAGAAAAACCAGTTTAGTTCTTATTGATGCCATAAATTTCAGAGTAGATTTCCAGAAACCTCCAGAACATTTTCAACACCTCAATGTCAACTCACCGTGTTTGCTTTGTTAGAAGCTCACYTTATGATGACACTTTGAGCTCAATTATCTCGGTTTCTTCAAAAGATATCAAGCAGCATTCAACTAATAAACTGTTTATCATAAAATGAGAAATAATCAGTTGACAAGTTTTTGATATCTTTCACAGGATTCAAGATAACTGAGCTCAAAGTGAACTTAACCGGAGGGCTTCTTTCAGAGCAAATATGGTAAAATTTCAAAAATCCAAACTCCTGTAGTACGGTACTTCCTAATAACTCAACTCTTTCTAACCCCTGACTCATTCCCAAAGCGGCTTAGTAGTTTCTAAAAGTTGTATATGAAAACATAGAACATTCAGAGACACATATATATTCATAATAATATTTTGTTTTGATATCCTTTTGCCTGCCAACTATGTCTCCTATTTTTTCCCGAAGCATAATCGGATTAGTGTCTTTCTTCTCCATCTTCTTCTTCTTCTTTCTCCCTTCCAAAAATGCCCCCAACGCGTGTATCACATTATCATTCGGCGTTGCGTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAACATTTTCAACACCTCAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTACCATATTTGCTCTGAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAACATTTTCAACACCTCAATGTCAACTCACCGTGTTTGCTTTGTTAGAAGCTCACCTTATGATGACACTTTGAGCTCAATTATCTCGGTTTCTTCAAAAGATATCAAGCAGCATTCAACTAATAAACTGTTTATCATAAAATGAGAAATAATCAGTTGACAAGTTTTTGATATCTTTCACAGGATTCAAGATAACTGAGCTCAAAGTGAACTTAACCGGAGGGCTTCTTTCAGAGCAAATATGGTAAA</canonical_amplicon>
		<polymorphic_amplicon>AGAACATTTTCAACACCTCAATGTCAACTCACCGTGTTTGCTTTGTTAGAAGCTCACYTTATGATGACACTTTGAGCTCAATTATCTCGGTTTCTTCAAAAGATATCAAGCAGCATTCAACTAATAAACTGTTTATCATAAAATGAGAAATAATCAGTTGACAAGTTTTTGATATCTTTCACAGGATTCAAGATAACTGAGCTCAAAGTGAACTTAACCGGAGGGCTTCTTTCAGAGCAAATATGGTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7791</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>177210</contig_pos>
        <strand>+</strand>
        <context>CTAAAAGTTG[C/T]ATATGAAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTAACCCCTGACTCATTCCCAAAGCGGCTTAGTAGTTTCTAAAAGTTG</left_flank>
        <right_flank>ATATGAAAACATAGAACATTCAGAGACACATATATATTCATAATAATATT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTGCACGGACCTTTTTGAGTGATTTTATCCATTTTGAATACAAAATCTCAGGAAAAATGTCAGTGCCTTACTAGAACTTTCCAGAAAAACCAGTTTAGTTCTTATTGATGCCATAAATTTCAGAGTAGATTTCCAGAAACCTCCAGAACATTTTCAACACCTCAATGTCAACTCACCGTGTTTGCTTTGTTAGAAGCTCACCTTATGATGACACTTTGAGCTCAATTATCTCGGTTTCTTCAAAAGATATCAAGCAGCATTCAACTAATAAACTGTTTATCATAAAATGAGAAATAATCAGTTGACAAGTTTTTGATATCTTTCACAGGATTCAAGATAACTGAGCTCAAAGTGAACTTAACCGGAGGGCTTCTTTCAGAGCAAATATGGTAAAATTTCAAAAATCCAAACTCCTGTAGTACGGTACTTCCTAATAACTCAACTCTTTCTAACCCCTGACTCATTCCCAAAGCGGCTTAGTAGTTTCTAAAAGTTGTATATGAAAACATAGAACATTCAGAGACACATATATATTCATAATAATATTTTGTTTTGATATCCTTTTGCCTGCCAACTATGTCTCCTATTTTTTCCCGAAGCATAATCGGATTAGTGTCTTTCTTCTCCATCTTCTTCTTCTTCTTTCTCCCTTCCAAAAATGCCCCCAACGCGTGTATCACATTATCATTCGGCGTTGCGTGCCAGCGTTGCGGTCGATTGGCGTCGTCGACACCACCACCTGCAATCGACTTTTAATTTTTCCTTGTCCCCGGAGAAAAAGAGCCACGGCTTCTTCTTTTTCTCTTAAGAAATCCTTCTATATGCACACCTTCTCCATCCCTCTTATCACCTATGTCCCCTTCTCGTTCTGGAGTCATATCCGGAGAGCTTGAGAGGGGGATGGCGGAGCAACACACACACCCAGAGCCAAACGACTTTTTTGTCCGAGTCGTCGGCTCCGCCCGTCCTCCCCTAGGTGTCTCACACTCTTCGAAAT</canonical>
            <polymorphic>AAAGTGCACGGACCTTTTTGAGTGATTTTATCCATTTTGAATACAAAATCTCAGGAAAAATGTCAGTGCCTTACTAGAACTTTCCAGAAAAACCAGTTTAGTTCTTATTGATGCCATAAATTTCAGAGTAGATTTCCAGAAACCTCCAGAACATTTTCAACACCTCAATGTCAACTCACCGTGTTTGCTTTGTTAGAAGCTCACCTTATGATGACACTTTGAGCTCAATTATCTCGGTTTCTTCAAAAGATATCAAGCAGCATTCAACTAATAAACTGTTTATCATAAAATGAGAAATAATCAGTTGACAAGTTTTTGATATCTTTCACAGGATTCAAGATAACTGAGCTCAAAGTGAACTTAACCGGAGGGCTTCTTTCAGAGCAAATATGGTAAAATTTCAAAAATCCAAACTCCTGTAGTACGGTACTTCCTAATAACTCAACTCTTTCTAACCCCTGACTCATTCCCAAAGCGGCTTAGTAGTTTCTAAAAGTTGYATATGAAAACATAGAACATTCAGAGACACATATATATTCATAATAATATTTTGTTTTGATATCCTTTTGCCTGCCAACTATGTCTCCTATTTTTTCCCGAAGCATAATCGGATTAGTGTCTTTCTTCTCCATCTTCTTCTTCTTCTTTCTCCCTTCCAAAAATGCCCCCAACGCGTGTATCACATTATCATTCGGCGTTGCGTGCCAGCGTTGCGGTCGATTGGCGTCGTCGACACCACCACCTGCAATCGACTTTTAATTTTTCCTTGTCCCCGGAGAAAAAGAGCCACGGCTTCTTCTTTTTCTCTTAAGAAATCCTTCTATATGCACACCTTCTCCATCCCTCTTATCACCTATGTCCCCTTCTCGTTCTGGAGTCATATCCGGAGAGCTTGAGAGGGGGATGGCGGAGCAACACACACACCCAGAGCCAAACGACTTTTTTGTCCGAGTCGTCGGCTCCGCCCGTCCTCCCCTAGGTGTCTCACACTCTTCGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTTTCAGAGCAAATATGGTA</pcr_primer_p1>
		<pcr_primer_p2>GCAAAAGGATATCAAAACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>198</pcr_amplicon_size>
		<canonical_amplicon>CTTCTTTCAGAGCAAATATGGTAAAATTTCAAAAATCCAAACTCCTGTAGTACGGTACTTCCTAATAACTCAACTCTTTCTAACCCCTGACTCATTCCCAAAGCGGCTTAGTAGTTTCTAAAAGTTGTATATGAAAACATAGAACATTCAGAGACACATATATATTCATAATAATATTTTGTTTTGATATCCTTTTGC</canonical_amplicon>
		<polymorphic_amplicon>CTTCTTTCAGAGCAAATATGGTAAAATTTCAAAAATCCAAACTCCTGTAGTACGGTACTTCCTAATAACTCAACTCTTTCTAACCCCTGACTCATTCCCAAAGCGGCTTAGTAGTTTCTAAAAGTTGYATATGAAAACATAGAACATTCAGAGACACATATATATTCATAATAATATTTTGTTTTGATATCCTTTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7792</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>184309</contig_pos>
        <strand>+</strand>
        <context>GGAAACCAAG[A/G]CATGAAGTGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGCGGCTCACCGTTGACCAGGTTTATGATCGGCGGACCGGGAAACCAAG</left_flank>
        <right_flank>CATGAAGTGCTTCGTGATCACTTCATTAAGGTGAGCAAAACTATATAGAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAATTATCCCATACTATTTCGCCACTGATTCAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCGGATTCTCGGCGTCTCTTCTCTCTTACACCTCTTGGATTCTGACGACGTCGTCGTCATTGGCGTTGTTGTGTTGGAAAAAGAAGAAGAAAAAGGGAAAGAAGTGAGGGAGGAAGGCAAAAAAGCTATGTGTGTGTGCGTTGAAATCGAAAATTAATCCTCTCTTTCTCTCTTTTCACTGCTCCGCCCGGCCGTTGAAACGCTTGAGAGGGTTCCCATAGTAATTTGAAGAAGACGGGGCGTCAAATGAAAAAAGAGCTCTTTTTAAGGAAAAAAAGGATGGGTGGTTTGAAAAGGGATCGGAATTTCCGATTCGGAAATGAATAACTTCAAATTTCAGCCGTCCAATTTCCGGTATCCGAGCGGCTCACCGTTGACCAGGTTTATGATCGGCGGACCGGGAAACCAAGGCATGAAGTGCTTCGTGATCACTTCATTAAGGTGAGCAAAACTATATAGATTTAAAGCAAGGCTGTGAAAATCACCACCGCGGCCGGCGTGGCCGGCCTTTGGAGGTTGCCGTGGACTAATCGACCCAGAAACCACTAGGGTATCCTACCTAACACAAAAATACTCTATTCCAGTTGTGGCGGCGGGTCGAGGCACAGCCTTGAGTCAAGCCAAGAATTCATTTTGTATTCCTAATTTTATTCCAAAAACTTCCGCACACAGAGAACAAAGACAATAAAATTAAAACACACCACACCACACCATGAAATTCAAAAAATGTTGACACATGAAAAATGCACAAAGGCCCTTGTACTTTATCCTTTGTTTTCAAAAATTCTGAATTTCTGAATTCCAAATTTTCCCGAATAAATGTATAAAAAGTTTTTTTTTGCAGGAGGGACGGATAGAAGAGGAAGCGGCGATTCGCGTGATTCAGGAGTGCACGAGTCTGTTCCGCAATG</canonical>
            <polymorphic>TCCAATTATCCCATACTATTTCGCCACTGATTCAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCGGATTCTCGGCGTCTCTTCTCTCTTACACCTCTTGGATTCTGACGACGTCGTCGTCATTGGCGTTGTTGTGTTGGAAAAAGAAGAAGAAAAAGGGAAAGAAGTGAGGGAGGAAGGCAAAAAAGCTATGTGTGTGTGCGTTGAAATCGAAAATTAATCCTCTCTTTCTCTCTTTTCACTGCTCCGCCCGGCCGTTGAAACGCTTGAGAGGGTTCCCATAGTAATTTGAAGAAGACGGGGCGTCAAATGAAAAAAGAGCTCTTTTTAAGGAAAAAAAGGATGGGTGGTTTGAAAAGGGATCGGAATTTCCGATTCGGAAATGAATAACTTCAAATTTCAGCCGTCCAATTTCCGGTATCCGAGCGGCTCACCGTTGACCAGGTTTATGATCGGCGGACCGGGAAACCAAGRCATGAAGTGCTTCGTGATCACTTCATTAAGGTGAGCAAAACTATATAGATTTAAAGCAAGGCTGTGAAAATCACCACCGCGGCCGGCGTGGCCGGCCTTTGGAGGTTGCCGTGGACTAATCGACCCAGAAACCACTAGGGTATCCTACCTAACACAAAAATACTCTATTCCAGTTGTGGCGGCGGGTCGAGGCACAGCCTTGAGTCAAGCCAAGAATTCATTTTGTATTCCTAATTTTATTCCAAAAACTTCCGCACACAGAGAACAAAGACAATAAAATTAAAACACACCACACCACACCATGAAATTCAAAAAATGTTGACACATGAAAAATGCACAAAGGCCCTTGTACTTTATCCTTTGTTTTCAAAAATTCTGAATTTCTGAATTCCAAATTTTCCCGAATAAATGTATAAAAAGTTTTTTTTTGCAGGAGGGACGGATAGAAGAGGAAGCGGCGATTCGCGTGATTCAGGAGTGCACGAGTCTGTTCCGCAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCANNNNNTGC</site>
                <isoschizomers>
                    <enzyme>ApaBI</enzyme>
                    <enzyme>BstAPI</enzyme>
                </isoschizomers>
                <canonical_bands>507 493</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>495 391 82 32</canonical_bands>
                <polymorphic_bands>577 391 32</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>506 412 82</canonical_bands>
                <polymorphic_bands>588 412</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCGGAAATGAATAACTTCAA</pcr_primer_p1>
		<pcr_primer_p2>GTTTCTGGGTCGATTAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ATTCGGAAATGAATAACTTCAAATTTCAGCCGTCCAATTTCCGGTATCCGAGCGGCTCACCGTTGACCAGGTTTATGATCGGCGGACCGGGAAACCAAGGCATGAAGTGCTTCGTGATCACTTCATTAAGGTGAGCAAAACTATATAGATTTAAAGCAAGGCTGTGAAAATCACCACCGCGGCCGGCGTGGCCGGCCTTTGGAGGTTGCCGTGGACTAATCGACCCAGAAAC</canonical_amplicon>
		<polymorphic_amplicon>ATTCGGAAATGAATAACTTCAAATTTCAGCCGTCCAATTTCCGGTATCCGAGCGGCTCACCGTTGACCAGGTTTATGATCGGCGGACCGGGAAACCAAGRCATGAAGTGCTTCGTGATCACTTCATTAAGGTGAGCAAAACTATATAGATTTAAAGCAAGGCTGTGAAAATCACCACCGCGGCCGGCGTGGCCGGCCTTTGGAGGTTGCCGTGGACTAATCGACCCAGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7793</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>184285</contig_pos>
        <strand>+</strand>
        <context>ACCAGGTTTA[C/T]GATCGGCGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGCCGTCCAATTTCCGGTATCCGAGCGGCTCACCGTTGACCAGGTTTA</left_flank>
        <right_flank>GATCGGCGGACCGGGAAACCAAGGCATGAAGTGCTTCGTGATCACTTCAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGCTCTTTTCACTAGCCACACTCTCCAATTATCCCATACTATTTCGCCACTGATTCAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCGGATTCTCGGCGTCTCTTCTCTCTTACACCTCTTGGATTCTGACGACGTCGTCGTCATTGGCGTTGTTGTGTTGGAAAAAGAAGAAGAAAAAGGGAAAGAAGTGAGGGAGGAAGGCAAAAAAGCTATGTGTGTGTGCGTTGAAATCGAAAATTAATCCTCTCTTTCTCTCTTTTCACTGCTCCGCCCGGCCGTTGAAACGCTTGAGAGGGTTCCCATAGTAATTTGAAGAAGACGGGGCGTCAAATGAAAAAAGAGCTCTTTTTAAGGAAAAAAAGGATGGGTGGTTTGAAAAGGGATCGGAATTTCCGATTCGGAAATGAATAACTTCAAATTTCAGCCGTCCAATTTCCGGTATCCGAGCGGCTCACCGTTGACCAGGTTTATGATCGGCGGACCGGGAAACCAAGGCATGAAGTGCTTCGTGATCACTTCATTAAGGTGAGCAAAACTATATAGATTTAAAGCAAGGCTGTGAAAATCACCACCGCGGCCGGCGTGGCCGGCCTTTGGAGGTTGCCGTGGACTAATCGACCCAGAAACCACTAGGGTATCCTACCTAACACAAAAATACTCTATTCCAGTTGTGGCGGCGGGTCGAGGCACAGCCTTGAGTCAAGCCAAGAATTCATTTTGTATTCCTAATTTTATTCCAAAAACTTCCGCACACAGAGAACAAAGACAATAAAATTAAAACACACCACACCACACCATGAAATTCAAAAAATGTTGACACATGAAAAATGCACAAAGGCCCTTGTACTTTATCCTTTGTTTTCAAAAATTCTGAATTTCTGAATTCCAAATTTTCCCGAATAAATGTATAAAAAGTTTTTTTTTGCAGGAGGGACGGATAGAAGAGGAAGCGGCGATTCGCGTGATTCAGG</canonical>
            <polymorphic>GCGCTCTTTTCACTAGCCACACTCTCCAATTATCCCATACTATTTCGCCACTGATTCAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCGGATTCTCGGCGTCTCTTCTCTCTTACACCTCTTGGATTCTGACGACGTCGTCGTCATTGGCGTTGTTGTGTTGGAAAAAGAAGAAGAAAAAGGGAAAGAAGTGAGGGAGGAAGGCAAAAAAGCTATGTGTGTGTGCGTTGAAATCGAAAATTAATCCTCTCTTTCTCTCTTTTCACTGCTCCGCCCGGCCGTTGAAACGCTTGAGAGGGTTCCCATAGTAATTTGAAGAAGACGGGGCGTCAAATGAAAAAAGAGCTCTTTTTAAGGAAAAAAAGGATGGGTGGTTTGAAAAGGGATCGGAATTTCCGATTCGGAAATGAATAACTTCAAATTTCAGCCGTCCAATTTCCGGTATCCGAGCGGCTCACCGTTGACCAGGTTTAYGATCGGCGGACCGGGAAACCAAGGCATGAAGTGCTTCGTGATCACTTCATTAAGGTGAGCAAAACTATATAGATTTAAAGCAAGGCTGTGAAAATCACCACCGCGGCCGGCGTGGCCGGCCTTTGGAGGTTGCCGTGGACTAATCGACCCAGAAACCACTAGGGTATCCTACCTAACACAAAAATACTCTATTCCAGTTGTGGCGGCGGGTCGAGGCACAGCCTTGAGTCAAGCCAAGAATTCATTTTGTATTCCTAATTTTATTCCAAAAACTTCCGCACACAGAGAACAAAGACAATAAAATTAAAACACACCACACCACACCATGAAATTCAAAAAATGTTGACACATGAAAAATGCACAAAGGCCCTTGTACTTTATCCTTTGTTTTCAAAAATTCTGAATTTCTGAATTCCAAATTTTCCCGAATAAATGTATAAAAAGTTTTTTTTTGCAGGAGGGACGGATAGAAGAGGAAGCGGCGATTCGCGTGATTCAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAGGGTTCCCATAGTAATTT</pcr_primer_p1>
		<pcr_primer_p2>ATATAGTTTTGCTCACCTTAATGA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GAGAGGGTTCCCATAGTAATTTGAAGAAGACGGGGCGTCAAATGAAAAAAGAGCTCTTTTTAAGGAAAAAAAGGATGGGTGGTTTGAAAAGGGATCGGAATTTCCGATTCGGAAATGAATAACTTCAAATTTCAGCCGTCCAATTTCCGGTATCCGAGCGGCTCACCGTTGACCAGGTTTATGATCGGCGGACCGGGAAACCAAGGCATGAAGTGCTTCGTGATCACTTCATTAAGGTGAGCAAAACTATAT</canonical_amplicon>
		<polymorphic_amplicon>GAGAGGGTTCCCATAGTAATTTGAAGAAGACGGGGCGTCAAATGAAAAAAGAGCTCTTTTTAAGGAAAAAAAGGATGGGTGGTTTGAAAAGGGATCGGAATTTCCGATTCGGAAATGAATAACTTCAAATTTCAGCCGTCCAATTTCCGGTATCCGAGCGGCTCACCGTTGACCAGGTTTAYGATCGGCGGACCGGGAAACCAAGGCATGAAGTGCTTCGTGATCACTTCATTAAGGTGAGCAAAACTATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7794</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>184273</contig_pos>
        <strand>+</strand>
        <context>GGCTCACCGT[C/T]GACCAGGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAACTTCAAATTTCAGCCGTCCAATTTCCGGTATCCGAGCGGCTCACCGT</left_flank>
        <right_flank>GACCAGGTTTATGATCGGCGGACCGGGAAACCAAGGCATGAAGTGCTTCG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAGCATTTTTTGCGCTCTTTTCACTAGCCACACTCTCCAATTATCCCATACTATTTCGCCACTGATTCAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCGGATTCTCGGCGTCTCTTCTCTCTTACACCTCTTGGATTCTGACGACGTCGTCGTCATTGGCGTTGTTGTGTTGGAAAAAGAAGAAGAAAAAGGGAAAGAAGTGAGGGAGGAAGGCAAAAAAGCTATGTGTGTGTGCGTTGAAATCGAAAATTAATCCTCTCTTTCTCTCTTTTCACTGCTCCGCCCGGCCGTTGAAACGCTTGAGAGGGTTCCCATAGTAATTTGAAGAAGACGGGGCGTCAAATGAAAAAAGAGCTCTTTTTAAGGAAAAAAAGGATGGGTGGTTTGAAAAGGGATCGGAATTTCCGATTCGGAAATGAATAACTTCAAATTTCAGCCGTCCAATTTCCGGTATCCGAGCGGCTCACCGTTGACCAGGTTTATGATCGGCGGACCGGGAAACCAAGGCATGAAGTGCTTCGTGATCACTTCATTAAGGTGAGCAAAACTATATAGATTTAAAGCAAGGCTGTGAAAATCACCACCGCGGCCGGCGTGGCCGGCCTTTGGAGGTTGCCGTGGACTAATCGACCCAGAAACCACTAGGGTATCCTACCTAACACAAAAATACTCTATTCCAGTTGTGGCGGCGGGTCGAGGCACAGCCTTGAGTCAAGCCAAGAATTCATTTTGTATTCCTAATTTTATTCCAAAAACTTCCGCACACAGAGAACAAAGACAATAAAATTAAAACACACCACACCACACCATGAAATTCAAAAAATGTTGACACATGAAAAATGCACAAAGGCCCTTGTACTTTATCCTTTGTTTTCAAAAATTCTGAATTTCTGAATTCCAAATTTTCCCGAATAAATGTATAAAAAGTTTTTTTTTGCAGGAGGGACGGATAGAAGAGGAAGCGGCGATTC</canonical>
            <polymorphic>CGAGCATTTTTTGCGCTCTTTTCACTAGCCACACTCTCCAATTATCCCATACTATTTCGCCACTGATTCAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCGGATTCTCGGCGTCTCTTCTCTCTTACACCTCTTGGATTCTGACGACGTCGTCGTCATTGGCGTTGTTGTGTTGGAAAAAGAAGAAGAAAAAGGGAAAGAAGTGAGGGAGGAAGGCAAAAAAGCTATGTGTGTGTGCGTTGAAATCGAAAATTAATCCTCTCTTTCTCTCTTTTCACTGCTCCGCCCGGCCGTTGAAACGCTTGAGAGGGTTCCCATAGTAATTTGAAGAAGACGGGGCGTCAAATGAAAAAAGAGCTCTTTTTAAGGAAAAAAAGGATGGGTGGTTTGAAAAGGGATCGGAATTTCCGATTCGGAAATGAATAACTTCAAATTTCAGCCGTCCAATTTCCGGTATCCGAGCGGCTCACCGTYGACCAGGTTTATGATCGGCGGACCGGGAAACCAAGGCATGAAGTGCTTCGTGATCACTTCATTAAGGTGAGCAAAACTATATAGATTTAAAGCAAGGCTGTGAAAATCACCACCGCGGCCGGCGTGGCCGGCCTTTGGAGGTTGCCGTGGACTAATCGACCCAGAAACCACTAGGGTATCCTACCTAACACAAAAATACTCTATTCCAGTTGTGGCGGCGGGTCGAGGCACAGCCTTGAGTCAAGCCAAGAATTCATTTTGTATTCCTAATTTTATTCCAAAAACTTCCGCACACAGAGAACAAAGACAATAAAATTAAAACACACCACACCACACCATGAAATTCAAAAAATGTTGACACATGAAAAATGCACAAAGGCCCTTGTACTTTATCCTTTGTTTTCAAAAATTCTGAATTTCTGAATTCCAAATTTTCCCGAATAAATGTATAAAAAGTTTTTTTTTGCAGGAGGGACGGATAGAAGAGGAAGCGGCGATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>500 356 144</canonical_bands>
                <polymorphic_bands>856 144</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAGGGTTCCCATAGTAATTT</pcr_primer_p1>
		<pcr_primer_p2>ATATAGTTTTGCTCACCTTAATGA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GAGAGGGTTCCCATAGTAATTTGAAGAAGACGGGGCGTCAAATGAAAAAAGAGCTCTTTTTAAGGAAAAAAAGGATGGGTGGTTTGAAAAGGGATCGGAATTTCCGATTCGGAAATGAATAACTTCAAATTTCAGCCGTCCAATTTCCGGTATCCGAGCGGCTCACCGTTGACCAGGTTTATGATCGGCGGACCGGGAAACCAAGGCATGAAGTGCTTCGTGATCACTTCATTAAGGTGAGCAAAACTATAT</canonical_amplicon>
		<polymorphic_amplicon>GAGAGGGTTCCCATAGTAATTTGAAGAAGACGGGGCGTCAAATGAAAAAAGAGCTCTTTTTAAGGAAAAAAAGGATGGGTGGTTTGAAAAGGGATCGGAATTTCCGATTCGGAAATGAATAACTTCAAATTTCAGCCGTCCAATTTCCGGTATCCGAGCGGCTCACCGTYGACCAGGTTTATGATCGGCGGACCGGGAAACCAAGGCATGAAGTGCTTCGTGATCACTTCATTAAGGTGAGCAAAACTATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7795</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>184170</contig_pos>
        <strand>+</strand>
        <context>TTTTTAAGGA[A/G]AAAAAGGATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATTTGAAGAAGACGGGGCGTCAAATGAAAAAAGAGCTCTTTTTAAGGA</left_flank>
        <right_flank>AAAAAGGATGGGTGGTTTGAAAAGGGATCGGAATTTCCGATTCGGAAATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATTGGAGCCTCAACGTCCTCCTCGTCCGATATCCACCCTCACATCCACCCTCACATTCATCGAAAACGAAAAAAAAGAGAAAAAAGAAGCCAGAAATTATACGAGCATTTTTTGCGCTCTTTTCACTAGCCACACTCTCCAATTATCCCATACTATTTCGCCACTGATTCAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCGGATTCTCGGCGTCTCTTCTCTCTTACACCTCTTGGATTCTGACGACGTCGTCGTCATTGGCGTTGTTGTGTTGGAAAAAGAAGAAGAAAAAGGGAAAGAAGTGAGGGAGGAAGGCAAAAAAGCTATGTGTGTGTGCGTTGAAATCGAAAATTAATCCTCTCTTTCTCTCTTTTCACTGCTCCGCCCGGCCGTTGAAACGCTTGAGAGGGTTCCCATAGTAATTTGAAGAAGACGGGGCGTCAAATGAAAAAAGAGCTCTTTTTAAGGAAAAAAAGGATGGGTGGTTTGAAAAGGGATCGGAATTTCCGATTCGGAAATGAATAACTTCAAATTTCAGCCGTCCAATTTCCGGTATCCGAGCGGCTCACCGTTGACCAGGTTTATGATCGGCGGACCGGGAAACCAAGGCATGAAGTGCTTCGTGATCACTTCATTAAGGTGAGCAAAACTATATAGATTTAAAGCAAGGCTGTGAAAATCACCACCGCGGCCGGCGTGGCCGGCCTTTGGAGGTTGCCGTGGACTAATCGACCCAGAAACCACTAGGGTATCCTACCTAACACAAAAATACTCTATTCCAGTTGTGGCGGCGGGTCGAGGCACAGCCTTGAGTCAAGCCAAGAATTCATTTTGTATTCCTAATTTTATTCCAAAAACTTCCGCACACAGAGAACAAAGACAATAAAATTAAAACACACCACACCACACCATGAAATTCAAAAAATGTTGACACATGAAAAATGCACAAAGGCCCTTGTACTTTATCCTT</canonical>
            <polymorphic>CCATTGGAGCCTCAACGTCCTCCTCGTCCGATATCCACCCTCACATCCACCCTCACATTCATCGAAAACGAAAAAAAAGAGAAAAAAGAAGCCAGAAATTATACGAGCATTTTTTGCGCTCTTTTCACTAGCCACACTCTCCAATTATCCCATACTATTTCGCCACTGATTCAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCGGATTCTCGGCGTCTCTTCTCTCTTACACCTCTTGGATTCTGACGACGTCGTCGTCATTGGCGTTGTTGTGTTGGAAAAAGAAGAAGAAAAAGGGAAAGAAGTGAGGGAGGAAGGCAAAAAAGCTATGTGTGTGTGCGTTGAAATCGAAAATTAATCCTCTCTTTCTCTCTTTTCACTGCTCCGCCCGGCCGTTGAAACGCTTGAGAGGGTTCCCATAGTAATTTGAAGAAGACGGGGCGTCAAATGAAAAAAGAGCTCTTTTTAAGGARAAAAAGGATGGGTGGTTTGAAAAGGGATCGGAATTTCCGATTCGGAAATGAATAACTTCAAATTTCAGCCGTCCAATTTCCGGTATCCGAGCGGCTCACCGTTGACCAGGTTTATGATCGGCGGACCGGGAAACCAAGGCATGAAGTGCTTCGTGATCACTTCATTAAGGTGAGCAAAACTATATAGATTTAAAGCAAGGCTGTGAAAATCACCACCGCGGCCGGCGTGGCCGGCCTTTGGAGGTTGCCGTGGACTAATCGACCCAGAAACCACTAGGGTATCCTACCTAACACAAAAATACTCTATTCCAGTTGTGGCGGCGGGTCGAGGCACAGCCTTGAGTCAAGCCAAGAATTCATTTTGTATTCCTAATTTTATTCCAAAAACTTCCGCACACAGAGAACAAAGACAATAAAATTAAAACACACCACACCACACCATGAAATTCAAAAAATGTTGACACATGAAAAATGCACAAAGGCCCTTGTACTTTATCCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGAAGAAAAAGGGAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TGAAGTTATTCATTTCCGAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGAAGAAGAAAAAGGGAAAGAAGTGAGGGAGGAAGGCAAAAAAGCTATGTGTGTGTGCGTTGAAATCGAAAATTAATCCTCTCTTTCTCTCTTTTCACTGCTCCGCCCGGCCGTTGAAACGCTTGAGAGGGTTCCCATAGTAATTTGAAGAAGACGGGGCGTCAAATGAAAAAAGAGCTCTTTTTAAGGAAAAAAAGGATGGGTGGTTTGAAAAGGGATCGGAATTTCCGATTCGGAAATGAATAACTTCA</canonical_amplicon>
		<polymorphic_amplicon>AGAAGAAGAAAAAGGGAAAGAAGTGAGGGAGGAAGGCAAAAAAGCTATGTGTGTGTGCGTTGAAATCGAAAATTAATCCTCTCTTTCTCTCTTTTCACTGCTCCGCCCGGCCGTTGAAACGCTTGAGAGGGTTCCCATAGTAATTTGAAGAAGACGGGGCGTCAAATGAAAAAAGAGCTCTTTTTAAGGARAAAAAGGATGGGTGGTTTGAAAAGGGATCGGAATTTCCGATTCGGAAATGAATAACTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7796</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>184127</contig_pos>
        <strand>+</strand>
        <context>TAGTAATTTG[A/G]AGAAGACGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGCTCCGCCCGGCCGTTGAAACGCTTGAGAGGGTTCCCATAGTAATTTG</left_flank>
        <right_flank>AGAAGACGGGGCGTCAAATGAAAAAAGAGCTCTTTTTAAGGAAAAAAAGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTTCATTTTCCCCTCTGCCCTTTTTTATTCCGGCAATGCTCCATTGGAGCCTCAACGTCCTCCTCGTCCGATATCCACCCTCACATCCACCCTCACATTCATCGAAAACGAAAAAAAAGAGAAAAAAGAAGCCAGAAATTATACGAGCATTTTTTGCGCTCTTTTCACTAGCCACACTCTCCAATTATCCCATACTATTTCGCCACTGATTCAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCGGATTCTCGGCGTCTCTTCTCTCTTACACCTCTTGGATTCTGACGACGTCGTCGTCATTGGCGTTGTTGTGTTGGAAAAAGAAGAAGAAAAAGGGAAAGAAGTGAGGGAGGAAGGCAAAAAAGCTATGTGTGTGTGCGTTGAAATCGAAAATTAATCCTCTCTTTCTCTCTTTTCACTGCTCCGCCCGGCCGTTGAAACGCTTGAGAGGGTTCCCATAGTAATTTGAAGAAGACGGGGCGTCAAATGAAAAAAGAGCTCTTTTTAAGGAAAAAAAGGATGGGTGGTTTGAAAAGGGATCGGAATTTCCGATTCGGAAATGAATAACTTCAAATTTCAGCCGTCCAATTTCCGGTATCCGAGCGGCTCACCGTTGACCAGGTTTATGATCGGCGGACCGGGAAACCAAGGCATGAAGTGCTTCGTGATCACTTCATTAAGGTGAGCAAAACTATATAGATTTAAAGCAAGGCTGTGAAAATCACCACCGCGGCCGGCGTGGCCGGCCTTTGGAGGTTGCCGTGGACTAATCGACCCAGAAACCACTAGGGTATCCTACCTAACACAAAAATACTCTATTCCAGTTGTGGCGGCGGGTCGAGGCACAGCCTTGAGTCAAGCCAAGAATTCATTTTGTATTCCTAATTTTATTCCAAAAACTTCCGCACACAGAGAACAAAGACAATAAAATTAAAACACACCACACCACACCATGAAATTCAAAAAATG</canonical>
            <polymorphic>CTTTTTCATTTTCCCCTCTGCCCTTTTTTATTCCGGCAATGCTCCATTGGAGCCTCAACGTCCTCCTCGTCCGATATCCACCCTCACATCCACCCTCACATTCATCGAAAACGAAAAAAAAGAGAAAAAAGAAGCCAGAAATTATACGAGCATTTTTTGCGCTCTTTTCACTAGCCACACTCTCCAATTATCCCATACTATTTCGCCACTGATTCAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCGGATTCTCGGCGTCTCTTCTCTCTTACACCTCTTGGATTCTGACGACGTCGTCGTCATTGGCGTTGTTGTGTTGGAAAAAGAAGAAGAAAAAGGGAAAGAAGTGAGGGAGGAAGGCAAAAAAGCTATGTGTGTGTGCGTTGAAATCGAAAATTAATCCTCTCTTTCTCTCTTTTCACTGCTCCGCCCGGCCGTTGAAACGCTTGAGAGGGTTCCCATAGTAATTTGRAGAAGACGGGGCGTCAAATGAAAAAAGAGCTCTTTTTAAGGAAAAAAAGGATGGGTGGTTTGAAAAGGGATCGGAATTTCCGATTCGGAAATGAATAACTTCAAATTTCAGCCGTCCAATTTCCGGTATCCGAGCGGCTCACCGTTGACCAGGTTTATGATCGGCGGACCGGGAAACCAAGGCATGAAGTGCTTCGTGATCACTTCATTAAGGTGAGCAAAACTATATAGATTTAAAGCAAGGCTGTGAAAATCACCACCGCGGCCGGCGTGGCCGGCCTTTGGAGGTTGCCGTGGACTAATCGACCCAGAAACCACTAGGGTATCCTACCTAACACAAAAATACTCTATTCCAGTTGTGGCGGCGGGTCGAGGCACAGCCTTGAGTCAAGCCAAGAATTCATTTTGTATTCCTAATTTTATTCCAAAAACTTCCGCACACAGAGAACAAAGACAATAAAATTAAAACACACCACACCACACCATGAAATTCAAAAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGAAGAAAAAGGGAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TGAAGTTATTCATTTCCGAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGAAGAAGAAAAAGGGAAAGAAGTGAGGGAGGAAGGCAAAAAAGCTATGTGTGTGTGCGTTGAAATCGAAAATTAATCCTCTCTTTCTCTCTTTTCACTGCTCCGCCCGGCCGTTGAAACGCTTGAGAGGGTTCCCATAGTAATTTGAAGAAGACGGGGCGTCAAATGAAAAAAGAGCTCTTTTTAAGGAAAAAAAGGATGGGTGGTTTGAAAAGGGATCGGAATTTCCGATTCGGAAATGAATAACTTCA</canonical_amplicon>
		<polymorphic_amplicon>AGAAGAAGAAAAAGGGAAAGAAGTGAGGGAGGAAGGCAAAAAAGCTATGTGTGTGTGCGTTGAAATCGAAAATTAATCCTCTCTTTCTCTCTTTTCACTGCTCCGCCCGGCCGTTGAAACGCTTGAGAGGGTTCCCATAGTAATTTGRAGAAGACGGGGCGTCAAATGAAAAAAGAGCTCTTTTTAAGGAAAAAAAGGATGGGTGGTTTGAAAAGGGATCGGAATTTCCGATTCGGAAATGAATAACTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7797</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>184002</contig_pos>
        <strand>+</strand>
        <context>AGGGAAAGAA[A/G]TGAGGGAGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGTCATTGGCGTTGTTGTGTTGGAAAAAGAAGAAGAAAAAGGGAAAGAA</left_flank>
        <right_flank>TGAGGGAGGAAGGCAAAAAAGCTATGTGTGTGTGCGTTGAAATCGAAAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAAGTTGGCGGCTTGGGGTGATCTTCTTTTAGAGAGTTTACGATATTTCACACGAACTTCACAACCTTCTAGATCAAATTCTTTTGCTATGGCTTCTAGCAGATCTATCATCGAGTCTTTCCCCTTTTTCATTTTCCCCTCTGCCCTTTTTTATTCCGGCAATGCTCCATTGGAGCCTCAACGTCCTCCTCGTCCGATATCCACCCTCACATCCACCCTCACATTCATCGAAAACGAAAAAAAAGAGAAAAAAGAAGCCAGAAATTATACGAGCATTTTTTGCGCTCTTTTCACTAGCCACACTCTCCAATTATCCCATACTATTTCGCCACTGATTCAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCGGATTCTCGGCGTCTCTTCTCTCTTACACCTCTTGGATTCTGACGACGTCGTCGTCATTGGCGTTGTTGTGTTGGAAAAAGAAGAAGAAAAAGGGAAAGAAGTGAGGGAGGAAGGCAAAAAAGCTATGTGTGTGTGCGTTGAAATCGAAAATTAATCCTCTCTTTCTCTCTTTTCACTGCTCCGCCCGGCCGTTGAAACGCTTGAGAGGGTTCCCATAGTAATTTGAAGAAGACGGGGCGTCAAATGAAAAAAGAGCTCTTTTTAAGGAAAAAAAGGATGGGTGGTTTGAAAAGGGATCGGAATTTCCGATTCGGAAATGAATAACTTCAAATTTCAGCCGTCCAATTTCCGGTATCCGAGCGGCTCACCGTTGACCAGGTTTATGATCGGCGGACCGGGAAACCAAGGCATGAAGTGCTTCGTGATCACTTCATTAAGGTGAGCAAAACTATATAGATTTAAAGCAAGGCTGTGAAAATCACCACCGCGGCCGGCGTGGCCGGCCTTTGGAGGTTGCCGTGGACTAATCGACCCAGAAACCACTAGGGTATCCTACCTAACACAAAAATACTCTATTCCAGTTGTGGCGGCGGGTCGAGGC</canonical>
            <polymorphic>TCAAAGTTGGCGGCTTGGGGTGATCTTCTTTTAGAGAGTTTACGATATTTCACACGAACTTCACAACCTTCTAGATCAAATTCTTTTGCTATGGCTTCTAGCAGATCTATCATCGAGTCTTTCCCCTTTTTCATTTTCCCCTCTGCCCTTTTTTATTCCGGCAATGCTCCATTGGAGCCTCAACGTCCTCCTCGTCCGATATCCACCCTCACATCCACCCTCACATTCATCGAAAACGAAAAAAAAGAGAAAAAAGAAGCCAGAAATTATACGAGCATTTTTTGCGCTCTTTTCACTAGCCACACTCTCCAATTATCCCATACTATTTCGCCACTGATTCAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCGGATTCTCGGCGTCTCTTCTCTCTTACACCTCTTGGATTCTGACGACGTCGTCGTCATTGGCGTTGTTGTGTTGGAAAAAGAAGAAGAAAAAGGGAAAGAARTGAGGGAGGAAGGCAAAAAAGCTATGTGTGTGTGCGTTGAAATCGAAAATTAATCCTCTCTTTCTCTCTTTTCACTGCTCCGCCCGGCCGTTGAAACGCTTGAGAGGGTTCCCATAGTAATTTGAAGAAGACGGGGCGTCAAATGAAAAAAGAGCTCTTTTTAAGGAAAAAAAGGATGGGTGGTTTGAAAAGGGATCGGAATTTCCGATTCGGAAATGAATAACTTCAAATTTCAGCCGTCCAATTTCCGGTATCCGAGCGGCTCACCGTTGACCAGGTTTATGATCGGCGGACCGGGAAACCAAGGCATGAAGTGCTTCGTGATCACTTCATTAAGGTGAGCAAAACTATATAGATTTAAAGCAAGGCTGTGAAAATCACCACCGCGGCCGGCGTGGCCGGCCTTTGGAGGTTGCCGTGGACTAATCGACCCAGAAACCACTAGGGTATCCTACCTAACACAAAAATACTCTATTCCAGTTGTGGCGGCGGGTCGAGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>142 108 93 84 72 50 43 40 33 33 30 29 26 24 23 22 21 20 15 14 13 9 7 7 7 6 6 6 4 3 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>142 108 93 84 72 59 50 43 40 33 30 29 24 23 22 21 20 15 14 13 9 7 7 7 6 6 6 4 3 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCCAATTATCCCATACTATTTC</pcr_primer_p1>
		<pcr_primer_p2>GAGGATTAATTTTCGATTTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TCTCCAATTATCCCATACTATTTCGCCACTGATTCAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCGGATTCTCGGCGTCTCTTCTCTCTTACACCTCTTGGATTCTGACGACGTCGTCGTCATTGGCGTTGTTGTGTTGGAAAAAGAAGAAGAAAAAGGGAAAGAAGTGAGGGAGGAAGGCAAAAAAGCTATGTGTGTGTGCGTTGAAATCGAAAATTAATCCTC</canonical_amplicon>
		<polymorphic_amplicon>TCTCCAATTATCCCATACTATTTCGCCACTGATTCAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCGGATTCTCGGCGTCTCTTCTCTCTTACACCTCTTGGATTCTGACGACGTCGTCGTCATTGGCGTTGTTGTGTTGGAAAAAGAAGAAGAAAAAGGGAAAGAARTGAGGGAGGAAGGCAAAAAAGCTATGTGTGTGTGCGTTGAAATCGAAAATTAATCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7798</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>191383</contig_pos>
        <strand>+</strand>
        <context>TTAAGACCAG[C/T]GTGTAAGGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGTTAAGGAACCCTTCTATTCCAGGTTTTACGGTATCTATTAAGACCAG</left_flank>
        <right_flank>GTGTAAGGCTATGAAGCTTTTTACGGTTCAAAAAACCGAAATCCAATGTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACATTTTTTAAACTGATAAATTATTCATCATAATATCACCAAGATTTTACCAGTTGACAGATTTTTGATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTTAAAAGTTATGGGTGGCGTTATAGTGTTTACGGTATATTTGTGATCTCCGTTTTTTGAGAATATAGATTTCAGAAAAAATTGAAACTTGGAATTCAGAAAAGCTAGAAAAGAAGATTAATATTTTAAATGCAAGACTCTGTCACTTTGATCCAACTTACCGTAAAACCTGTATTAGAAGGGCCCTGATACTACCAAGTTTGAGCTGATTTTTCTCCGTTCCTATGGGAGATATCAAAAATCTGTAAAGTGATAAAACATTTCTGGTGTTATGATAACAAATTCATTAGTTGACAGCTTTTTTATACCTTTGACAGGAACCGAGAAAAAGTGACTCAAAGTTGAAAGTTAAGGAACCCTTCTATTCCAGGTTTTACGGTATCTATTAAGACCAGTGTGTAAGGCTATGAAGCTTTTTACGGTTCAAAAAACCGAAATCCAATGTTTTCAAAAAGAACTTCATTTTTCAGTGGCCGCCGTCTCCGGAGTCGATCAAGGACACACTATCCAAACATTCGAAGAAGCTCGCCGTCTCGATAAAATCAACGAAAGAATGCCACCAACAATGGCGACACCGCCAGCTCAATCACCATCTCAATCGCCAATTCCATCACGGCAAACAACTCCACAACCACCTCAAAATGGACCATCGAATAGTTCATAGTGTGATCCTATACATTGTCAGTCATTTCGTCACATCACACCAGCCGACATATCAAAAAAGAGAGTTCACCGGCAAATGAGGCGATCTGACACTAAACTACTACTACTCCTAAAACAACAGCTTGTTGCGTATATGTATACATATAATTTTATATTACTATTTCTTTTGTAGTTCGGTGAAAATGTGTGCTCTACAATTCTCAGTAGAGCACATGTGCACTATTTCTTTCTTG</canonical>
            <polymorphic>AACATTTTTTAAACTGATAAATTATTCATCATAATATCACCAAGATTTTACCAGTTGACAGATTTTTGATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTTAAAAGTTATGGGTGGCGTTATAGTGTTTACGGTATATTTGTGATCTCCGTTTTTTGAGAATATAGATTTCAGAAAAAATTGAAACTTGGAATTCAGAAAAGCTAGAAAAGAAGATTAATATTTTAAATGCAAGACTCTGTCACTTTGATCCAACTTACCGTAAAACCTGTATTAGAAGGGCCCTGATACTACCAAGTTTGAGCTGATTTTTCTCCGTTCCTATGGGAGATATCAAAAATCTGTAAAGTGATAAAACATTTCTGGTGTTATGATAACAAATTCATTAGTTGACAGCTTTTTTATACCTTTGACAGGAACCGAGAAAAAGTGACTCAAAGTTGAAAGTTAAGGAACCCTTCTATTCCAGGTTTTACGGTATCTATTAAGACCAGYGTGTAAGGCTATGAAGCTTTTTACGGTTCAAAAAACCGAAATCCAATGTTTTCAAAAAGAACTTCATTTTTCAGTGGCCGCCGTCTCCGGAGTCGATCAAGGACACACTATCCAAACATTCGAAGAAGCTCGCCGTCTCGATAAAATCAACGAAAGAATGCCACCAACAATGGCGACACCGCCAGCTCAATCACCATCTCAATCGCCAATTCCATCACGGCAAACAACTCCACAACCACCTCAAAATGGACCATCGAATAGTTCATAGTGTGATCCTATACATTGTCAGTCATTTCGTCACATCACACCAGCCGACATATCAAAAAAGAGAGTTCACCGGCAAATGAGGCGATCTGACACTAAACTACTACTACTCCTAAAACAACAGCTTGTTGCGTATATGTATACATATAATTTTATATTACTATTTCTTTTGTAGTTCGGTGAAAATGTGTGCTCTACAATTCTCAGTAGAGCACATGTGCACTATTTCTTTCTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>107 100 87 82 73 64 64 56 39 32 29 29 28 24 23 22 17 17 15 15 15 14 11 8 6 6 5 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>107 100 87 82 73 66 64 56 39 32 29 29 28 24 23 22 17 17 15 15 15 14 11 8 6 6 5 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAAGACTCTGTCACTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>AAACATTGGATTTCGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>316</pcr_amplicon_size>
		<canonical_amplicon>GCAAGACTCTGTCACTTTGATCCAACTTACCGTAAAACCTGTATTAGAAGGGCCCTGATACTACCAAGTTTGAGCTGATTTTTCTCCGTTCCTATGGGAGATATCAAAAATCTGTAAAGTGATAAAACATTTCTGGTGTTATGATAACAAATTCATTAGTTGACAGCTTTTTTATACCTTTGACAGGAACCGAGAAAAAGTGACTCAAAGTTGAAAGTTAAGGAACCCTTCTATTCCAGGTTTTACGGTATCTATTAAGACCAGTGTGTAAGGCTATGAAGCTTTTTACGGTTCAAAAAACCGAAATCCAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GCAAGACTCTGTCACTTTGATCCAACTTACCGTAAAACCTGTATTAGAAGGGCCCTGATACTACCAAGTTTGAGCTGATTTTTCTCCGTTCCTATGGGAGATATCAAAAATCTGTAAAGTGATAAAACATTTCTGGTGTTATGATAACAAATTCATTAGTTGACAGCTTTTTTATACCTTTGACAGGAACCGAGAAAAAGTGACTCAAAGTTGAAAGTTAAGGAACCCTTCTATTCCAGGTTTTACGGTATCTATTAAGACCAGYGTGTAAGGCTATGAAGCTTTTTACGGTTCAAAAAACCGAAATCCAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7799</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>191448</contig_pos>
        <strand>+</strand>
        <context>AAAAGAACTT[C/T]ATTTTTCAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCTTTTTACGGTTCAAAAAACCGAAATCCAATGTTTTCAAAAAGAACTT</left_flank>
        <right_flank>ATTTTTCAGTGGCCGCCGTCTCCGGAGTCGATCAAGGACACACTATCCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTTAAAAGTTATGGGTGGCGTTATAGTGTTTACGGTATATTTGTGATCTCCGTTTTTTGAGAATATAGATTTCAGAAAAAATTGAAACTTGGAATTCAGAAAAGCTAGAAAAGAAGATTAATATTTTAAATGCAAGACTCTGTCACTTTGATCCAACTTACCGTAAAACCTGTATTAGAAGGGCCCTGATACTACCAAGTTTGAGCTGATTTTTCTCCGTTCCTATGGGAGATATCAAAAATCTGTAAAGTGATAAAACATTTCTGGTGTTATGATAACAAATTCATTAGTTGACAGCTTTTTTATACCTTTGACAGGAACCGAGAAAAAGTGACTCAAAGTTGAAAGTTAAGGAACCCTTCTATTCCAGGTTTTACGGTATCTATTAAGACCAGTGTGTAAGGCTATGAAGCTTTTTACGGTTCAAAAAACCGAAATCCAATGTTTTCAAAAAGAACTTCATTTTTCAGTGGCCGCCGTCTCCGGAGTCGATCAAGGACACACTATCCAAACATTCGAAGAAGCTCGCCGTCTCGATAAAATCAACGAAAGAATGCCACCAACAATGGCGACACCGCCAGCTCAATCACCATCTCAATCGCCAATTCCATCACGGCAAACAACTCCACAACCACCTCAAAATGGACCATCGAATAGTTCATAGTGTGATCCTATACATTGTCAGTCATTTCGTCACATCACACCAGCCGACATATCAAAAAAGAGAGTTCACCGGCAAATGAGGCGATCTGACACTAAACTACTACTACTCCTAAAACAACAGCTTGTTGCGTATATGTATACATATAATTTTATATTACTATTTCTTTTGTAGTTCGGTGAAAATGTGTGCTCTACAATTCTCAGTAGAGCACATGTGCACTATTTCTTTCTTGAGCTAGATGCAAATTCCCCCCCCCCCCACTAATTTTTCCCCAATCACATAGTTTTCACCCTTAGT</canonical>
            <polymorphic>TTGATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTTAAAAGTTATGGGTGGCGTTATAGTGTTTACGGTATATTTGTGATCTCCGTTTTTTGAGAATATAGATTTCAGAAAAAATTGAAACTTGGAATTCAGAAAAGCTAGAAAAGAAGATTAATATTTTAAATGCAAGACTCTGTCACTTTGATCCAACTTACCGTAAAACCTGTATTAGAAGGGCCCTGATACTACCAAGTTTGAGCTGATTTTTCTCCGTTCCTATGGGAGATATCAAAAATCTGTAAAGTGATAAAACATTTCTGGTGTTATGATAACAAATTCATTAGTTGACAGCTTTTTTATACCTTTGACAGGAACCGAGAAAAAGTGACTCAAAGTTGAAAGTTAAGGAACCCTTCTATTCCAGGTTTTACGGTATCTATTAAGACCAGTGTGTAAGGCTATGAAGCTTTTTACGGTTCAAAAAACCGAAATCCAATGTTTTCAAAAAGAACTTYATTTTTCAGTGGCCGCCGTCTCCGGAGTCGATCAAGGACACACTATCCAAACATTCGAAGAAGCTCGCCGTCTCGATAAAATCAACGAAAGAATGCCACCAACAATGGCGACACCGCCAGCTCAATCACCATCTCAATCGCCAATTCCATCACGGCAAACAACTCCACAACCACCTCAAAATGGACCATCGAATAGTTCATAGTGTGATCCTATACATTGTCAGTCATTTCGTCACATCACACCAGCCGACATATCAAAAAAGAGAGTTCACCGGCAAATGAGGCGATCTGACACTAAACTACTACTACTCCTAAAACAACAGCTTGTTGCGTATATGTATACATATAATTTTATATTACTATTTCTTTTGTAGTTCGGTGAAAATGTGTGCTCTACAATTCTCAGTAGAGCACATGTGCACTATTTCTTTCTTGAGCTAGATGCAAATTCCCCCCCCCCCCACTAATTTTTCCCCAATCACATAGTTTTCACCCTTAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGCTTTTTACGGTTCAA</pcr_primer_p1>
		<pcr_primer_p2>AACTATTCGATGGTCCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TGAAGCTTTTTACGGTTCAAAAAACCGAAATCCAATGTTTTCAAAAAGAACTTCATTTTTCAGTGGCCGCCGTCTCCGGAGTCGATCAAGGACACACTATCCAAACATTCGAAGAAGCTCGCCGTCTCGATAAAATCAACGAAAGAATGCCACCAACAATGGCGACACCGCCAGCTCAATCACCATCTCAATCGCCAATTCCATCACGGCAAACAACTCCACAACCACCTCAAAATGGACCATCGAATAGTT</canonical_amplicon>
		<polymorphic_amplicon>TGAAGCTTTTTACGGTTCAAAAAACCGAAATCCAATGTTTTCAAAAAGAACTTYATTTTTCAGTGGCCGCCGTCTCCGGAGTCGATCAAGGACACACTATCCAAACATTCGAAGAAGCTCGCCGTCTCGATAAAATCAACGAAAGAATGCCACCAACAATGGCGACACCGCCAGCTCAATCACCATCTCAATCGCCAATTCCATCACGGCAAACAACTCCACAACCACCTCAAAATGGACCATCGAATAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7800</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>193746</contig_pos>
        <strand>+</strand>
        <context>GGTAAAGTGT[C/T]GACGTAGATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCGCATTTGAATTTCGGATGAAGAGGTCGCATTCCATCAGGTAAAGTGT</left_flank>
        <right_flank>GACGTAGATGACGAAGGACTCGACGACGTTCATATTTTTCAGAAAGTAGT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCATCATTGTCATGCATTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCGTTTTATATCCAGCCCTCCGAAAAAAGCGCACGGCGTTGAAACGCTGTAATTATAGAAATTAACATTTCAGCAACAATTTCAAAAACCCACAACACAAAAGTTCGAATCAATGACTCTTCTCTTTCCACTACATTCAGACCATCGGTTAGCTCAATCATCATATCTTCACTTTCAATAATATTAGCAGTGATGTATTCCATTCTTTGATTGCTTCCATTTTTCCACGACTTCAAAAACGTGTTCCATTCTGTCGGTGTGAATTCAGATGTATCAAGTTGAATGTGTTTGCAGTCCGAATTCGAAATGTCTTTCAGGGACATCCAGTTGTTTGATGGATGATCAGTAACACTCAAAAAGTCGCATTTGAATTTCGGATGAAGAGGTCGCATTCCATCAGGTAAAGTGTCGACGTAGATGACGAAGGACTCGACGACGTTCATATTTTTCAGAAAGTAGTCAAGATCTTCAACGTCTCTCTCTGCTTCATACTTGATTATCAGTTCATTGATGGATTGTTGTCTCTCGTTCAACCATCCTAAAATCTGAGGCATCATTCCTATACAATGACCACAGTCTATGATCAACGAATCTATGTCGCATTTCAGGAACCGTGTCATCCCATCGATAGATACGGTCAGGCTAGCCAAACTGTCATTGCTAAAACTAAACATTGCCGATTCCAGAATATCTTTCAGATCTAGACGGTCACAGTCTAGATATGGGATGAAAAAGGATTCTGATGTGTCACCCTTGGATGTTTCCAGCATTGCCATCATTTGTATACTGATTTTAATTTTGAACATGTTTCGGGGCAAATCTCTAATCAAATTATTATTGAAATGTCGAGAGGTGTTTGATAGTGCGGATCTGAATACAAACGGTAAAGTGGAGAAACTACAGTAAACAC</canonical>
            <polymorphic>TACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCATCATTGTCATGCATTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCGTTTTATATCCAGCCCTCCGAAAAAAGCGCACGGCGTTGAAACGCTGTAATTATAGAAATTAACATTTCAGCAACAATTTCAAAAACCCACAACACAAAAGTTCGAATCAATGACTCTTCTCTTTCCACTACATTCAGACCATCGGTTAGCTCAATCATCATATCTTCACTTTCAATAATATTAGCAGTGATGTATTCCATTCTTTGATTGCTTCCATTTTTCCACGACTTCAAAAACGTGTTCCATTCTGTCGGTGTGAATTCAGATGTATCAAGTTGAATGTGTTTGCAGTCCGAATTCGAAATGTCTTTCAGGGACATCCAGTTGTTTGATGGATGATCAGTAACACTCAAAAAGTCGCATTTGAATTTCGGATGAAGAGGTCGCATTCCATCAGGTAAAGTGTYGACGTAGATGACGAAGGACTCGACGACGTTCATATTTTTCAGAAAGTAGTCAAGATCTTCAACGTCTCTCTCTGCTTCATACTTGATTATCAGTTCATTGATGGATTGTTGTCTCTCGTTCAACCATCCTAAAATCTGAGGCATCATTCCTATACAATGACCACAGTCTATGATCAACGAATCTATGTCGCATTTCAGGAACCGTGTCATCCCATCGATAGATACGGTCAGGCTAGCCAAACTGTCATTGCTAAAACTAAACATTGCCGATTCCAGAATATCTTTCAGATCTAGACGGTCACAGTCTAGATATGGGATGAAAAAGGATTCTGATGTGTCACCCTTGGATGTTTCCAGCATTGCCATCATTTGTATACTGATTTTAATTTTGAACATGTTTCGGGGCAAATCTCTAATCAAATTATTATTGAAATGTCGAGAGGTGTTTGATAGTGCGGATCTGAATACAAACGGTAAAGTGGAGAAACTACAGTAAACAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>499 374 127</canonical_bands>
                <polymorphic_bands>873 127</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>221 197 196 195 107 63 21</canonical_bands>
                <polymorphic_bands>221 197 196 195 128 63</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>504 475 21</canonical_bands>
                <polymorphic_bands>525 475</polymorphic_bands>
            </assay>
            <assay>
                <site>GTCGAC</site>
                <isoschizomers>
                    <enzyme>SalI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGTGAATTCAGATGTATCAAG</pcr_primer_p1>
		<pcr_primer_p2>CTGATAATCAAGTATGAAGCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGTGTGAATTCAGATGTATCAAGTTGAATGTGTTTGCAGTCCGAATTCGAAATGTCTTTCAGGGACATCCAGTTGTTTGATGGATGATCAGTAACACTCAAAAAGTCGCATTTGAATTTCGGATGAAGAGGTCGCATTCCATCAGGTAAAGTGTCGACGTAGATGACGAAGGACTCGACGACGTTCATATTTTTCAGAAAGTAGTCAAGATCTTCAACGTCTCTCTCTGCTTCATACTTGATTATCAG</canonical_amplicon>
		<polymorphic_amplicon>GGTGTGAATTCAGATGTATCAAGTTGAATGTGTTTGCAGTCCGAATTCGAAATGTCTTTCAGGGACATCCAGTTGTTTGATGGATGATCAGTAACACTCAAAAAGTCGCATTTGAATTTCGGATGAAGAGGTCGCATTCCATCAGGTAAAGTGTYGACGTAGATGACGAAGGACTCGACGACGTTCATATTTTTCAGAAAGTAGTCAAGATCTTCAACGTCTCTCTCTGCTTCATACTTGATTATCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7801</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>193297</contig_pos>
        <strand>+</strand>
        <context>TKSTCATGYA[A/T]TATTGGTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCATCATTGTCATGCA</left_flank>
        <right_flank>TATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCGTTTTATAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGATTTAAAACAGAATAAGAAGTTATAAATTATTGTAACACCTGTAATAGAAGGGCTTCTTAACTTTCAACTTTGATCTAATTTTTTTGGTTCCTATGAGAGATATGAGAAATTTTTTGTCAGTTGACACATTTTTGAAATTTTTCGTAGGAACTGAGATAATTGAGCTCAAACTTGACAGTGTGGAAAAAAATTACAAAACTTCGTATCAAGAAATCAAATACAATAGATATAAAAATACAGTTTAACAAATACAGTAAAAACTCTATTAGAAAGTCATGGCACTATATTGCCCGGTGGGTGTCTAGGGTGGCACTGTATTAGGGGGTGGCACTATATTAGAGGCTGGCATTCAATTAAGGGAGGCTATCTAATAGAGTTTTTACGATAACAGCGAAAAAGGAATAATCAAAAATACGTAAGATCTTAATTAGTACCTTCTGGCCATACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCATCATTGTCATGCATTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCGTTTTATATCCAGCCCTCCGAAAAAAGCGCACGGCGTTGAAACGCTGTAATTATAGAAATTAACATTTCAGCAACAATTTCAAAAACCCACAACACAAAAGTTCGAATCAATGACTCTTCTCTTTCCACTACATTCAGACCATCGGTTAGCTCAATCATCATATCTTCACTTTCAATAATATTAGCAGTGATGTATTCCATTCTTTGATTGCTTCCATTTTTCCACGACTTCAAAAACGTGTTCCATTCTGTCGGTGTGAATTCAGATGTATCAAGTTGAATGTGTTTGCAGTCCGAATTCGAAATGTCTTTCAGGGACATCCAGTTGTTTGATGGATGATCAGTAACACTCAAAAAGTCGCATTTGAATTTCGGATGAAGAGGTCGCATTCCATCAGGTAAAGTGTCGACGTAGATGACGAAGGACTCGACGACGTTCATATTTTTCAGAAAGTAGTC</canonical>
            <polymorphic>GATGATTTAAAACAGAATAAGAAGTTATAAATTATTGTAACACCTGTAATAGAAGGGCTTCTTAACTTTCAACTTTGATCTAATTTTTTTGGTTCCTATGAGAGATATGAGAAATTTTTTGTCAGTTGACACATTTTTGAAATTTTTCGTAGGAACTGAGATAATTGAGCTCAAACTTGACAGTGTGGAAAAAAATTACAAAACTTCGTATCAAGAAATCAAATACAATAGATATAAAAATACAGTTTAACAAATACAGTAAAAACTCTATTAGAAAGTCATGGCACTATATTGCCCGGTGGGTGTCTAGGGTGGCACTGTATTAGGGGGTGGCACTATATTAGAGGCTGGCATTCAATTAAGGGAGGCTATCTAATAGAGTTTTTACGATAACAGCGAAAAAGGAATAATCAAAAATACGTAAGATCTTAATTAGTACCTTCTGGCCATACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCATCATTGTCATGCAWTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCGTTTTATATCCAGCCCTCCGAAAAAAGCGCACGGCGTTGAAACGCTGTAATTATAGAAATTAACATTTCAGCAACAATTTCAAAAACCCACAACACAAAAGTTCGAATCAATGACTCTTCTCTTTCCACTACATTCAGACCATCGGTTAGCTCAATCATCATATCTTCACTTTCAATAATATTAGCAGTGATGTATTCCATTCTTTGATTGCTTCCATTTTTCCACGACTTCAAAAACGTGTTCCATTCTGTCGGTGTGAATTCAGATGTATCAAGTTGAATGTGTTTGCAGTCCGAATTCGAAATGTCTTTCAGGGACATCCAGTTGTTTGATGGATGATCAGTAACACTCAAAAAGTCGCATTTGAATTTCGGATGAAGAGGTCGCATTCCATCAGGTAAAGTGTCGACGTAGATGACGAAGGACTCGACGACGTTCATATTTTTCAGAAAGTAGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATGCAT</site>
                <isoschizomers>
                    <enzyme>BfrBI</enzyme>
                    <enzyme>EcoT22I</enzyme>
                    <enzyme>Mph1103I</enzyme>
                    <enzyme>NsiI</enzyme>
                    <enzyme>Ppu10I</enzyme>
                    <enzyme>Zsp2I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGGCCATACGACTACTGTAA</pcr_primer_p1>
		<pcr_primer_p2>GTCTGAATGTAGTGGAAAGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CTGGCCATACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCATCATTGTCATGCATTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCGTTTTATATCCAGCCCTCCGAAAAAAGCGCACGGCGTTGAAACGCTGTAATTATAGAAATTAACATTTCAGCAACAATTTCAAAAACCCACAACACAAAAGTTCGAATCAATGACTCTTCTCTTTCCACTACATTCAGAC</canonical_amplicon>
		<polymorphic_amplicon>CTGGCCATACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCATCATTGTCATGCAWTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCGTTTTATATCCAGCCCTCCGAAAAAAGCGCACGGCGTTGAAACGCTGTAATTATAGAAATTAACATTTCAGCAACAATTTCAAAAACCCACAACACAAAAGTTCGAATCAATGACTCTTCTCTTTCCACTACATTCAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7802</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>193295</contig_pos>
        <strand>+</strand>
        <context>CATKSTCATG[C/T]AWTATTGGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCATCATTGTCATG</left_flank>
        <right_flank>ATTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCGTTTTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGATGATTTAAAACAGAATAAGAAGTTATAAATTATTGTAACACCTGTAATAGAAGGGCTTCTTAACTTTCAACTTTGATCTAATTTTTTTGGTTCCTATGAGAGATATGAGAAATTTTTTGTCAGTTGACACATTTTTGAAATTTTTCGTAGGAACTGAGATAATTGAGCTCAAACTTGACAGTGTGGAAAAAAATTACAAAACTTCGTATCAAGAAATCAAATACAATAGATATAAAAATACAGTTTAACAAATACAGTAAAAACTCTATTAGAAAGTCATGGCACTATATTGCCCGGTGGGTGTCTAGGGTGGCACTGTATTAGGGGGTGGCACTATATTAGAGGCTGGCATTCAATTAAGGGAGGCTATCTAATAGAGTTTTTACGATAACAGCGAAAAAGGAATAATCAAAAATACGTAAGATCTTAATTAGTACCTTCTGGCCATACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCATCATTGTCATGCATTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCGTTTTATATCCAGCCCTCCGAAAAAAGCGCACGGCGTTGAAACGCTGTAATTATAGAAATTAACATTTCAGCAACAATTTCAAAAACCCACAACACAAAAGTTCGAATCAATGACTCTTCTCTTTCCACTACATTCAGACCATCGGTTAGCTCAATCATCATATCTTCACTTTCAATAATATTAGCAGTGATGTATTCCATTCTTTGATTGCTTCCATTTTTCCACGACTTCAAAAACGTGTTCCATTCTGTCGGTGTGAATTCAGATGTATCAAGTTGAATGTGTTTGCAGTCCGAATTCGAAATGTCTTTCAGGGACATCCAGTTGTTTGATGGATGATCAGTAACACTCAAAAAGTCGCATTTGAATTTCGGATGAAGAGGTCGCATTCCATCAGGTAAAGTGTCGACGTAGATGACGAAGGACTCGACGACGTTCATATTTTTCAGAAAGTAG</canonical>
            <polymorphic>ACGATGATTTAAAACAGAATAAGAAGTTATAAATTATTGTAACACCTGTAATAGAAGGGCTTCTTAACTTTCAACTTTGATCTAATTTTTTTGGTTCCTATGAGAGATATGAGAAATTTTTTGTCAGTTGACACATTTTTGAAATTTTTCGTAGGAACTGAGATAATTGAGCTCAAACTTGACAGTGTGGAAAAAAATTACAAAACTTCGTATCAAGAAATCAAATACAATAGATATAAAAATACAGTTTAACAAATACAGTAAAAACTCTATTAGAAAGTCATGGCACTATATTGCCCGGTGGGTGTCTAGGGTGGCACTGTATTAGGGGGTGGCACTATATTAGAGGCTGGCATTCAATTAAGGGAGGCTATCTAATAGAGTTTTTACGATAACAGCGAAAAAGGAATAATCAAAAATACGTAAGATCTTAATTAGTACCTTCTGGCCATACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCATCATTGTCATGYATTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCGTTTTATATCCAGCCCTCCGAAAAAAGCGCACGGCGTTGAAACGCTGTAATTATAGAAATTAACATTTCAGCAACAATTTCAAAAACCCACAACACAAAAGTTCGAATCAATGACTCTTCTCTTTCCACTACATTCAGACCATCGGTTAGCTCAATCATCATATCTTCACTTTCAATAATATTAGCAGTGATGTATTCCATTCTTTGATTGCTTCCATTTTTCCACGACTTCAAAAACGTGTTCCATTCTGTCGGTGTGAATTCAGATGTATCAAGTTGAATGTGTTTGCAGTCCGAATTCGAAATGTCTTTCAGGGACATCCAGTTGTTTGATGGATGATCAGTAACACTCAAAAAGTCGCATTTGAATTTCGGATGAAGAGGTCGCATTCCATCAGGTAAAGTGTCGACGTAGATGACGAAGGACTCGACGACGTTCATATTTTTCAGAAAGTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATGCAT</site>
                <isoschizomers>
                    <enzyme>BfrBI</enzyme>
                    <enzyme>EcoT22I</enzyme>
                    <enzyme>Mph1103I</enzyme>
                    <enzyme>NsiI</enzyme>
                    <enzyme>Ppu10I</enzyme>
                    <enzyme>Zsp2I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>468 307 168 31 26</canonical_bands>
                <polymorphic_bands>468 307 168 57</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGGCCATACGACTACTGTAA</pcr_primer_p1>
		<pcr_primer_p2>GTCTGAATGTAGTGGAAAGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CTGGCCATACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCATCATTGTCATGCATTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCGTTTTATATCCAGCCCTCCGAAAAAAGCGCACGGCGTTGAAACGCTGTAATTATAGAAATTAACATTTCAGCAACAATTTCAAAAACCCACAACACAAAAGTTCGAATCAATGACTCTTCTCTTTCCACTACATTCAGAC</canonical_amplicon>
		<polymorphic_amplicon>CTGGCCATACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCATCATTGTCATGYATTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCGTTTTATATCCAGCCCTCCGAAAAAAGCGCACGGCGTTGAAACGCTGTAATTATAGAAATTAACATTTCAGCAACAATTTCAAAAACCCACAACACAAAAGTTCGAATCAATGACTCTTCTCTTTCCACTACATTCAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7803</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>193289</contig_pos>
        <strand>+</strand>
        <context>CGTCRTCATK[C/G]TCATGYAWTA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCTGGCCATACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCATCATT</left_flank>
        <right_flank>TCATGCATTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTCAACGATGATTTAAAACAGAATAAGAAGTTATAAATTATTGTAACACCTGTAATAGAAGGGCTTCTTAACTTTCAACTTTGATCTAATTTTTTTGGTTCCTATGAGAGATATGAGAAATTTTTTGTCAGTTGACACATTTTTGAAATTTTTCGTAGGAACTGAGATAATTGAGCTCAAACTTGACAGTGTGGAAAAAAATTACAAAACTTCGTATCAAGAAATCAAATACAATAGATATAAAAATACAGTTTAACAAATACAGTAAAAACTCTATTAGAAAGTCATGGCACTATATTGCCCGGTGGGTGTCTAGGGTGGCACTGTATTAGGGGGTGGCACTATATTAGAGGCTGGCATTCAATTAAGGGAGGCTATCTAATAGAGTTTTTACGATAACAGCGAAAAAGGAATAATCAAAAATACGTAAGATCTTAATTAGTACCTTCTGGCCATACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCATCATTGTCATGCATTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCGTTTTATATCCAGCCCTCCGAAAAAAGCGCACGGCGTTGAAACGCTGTAATTATAGAAATTAACATTTCAGCAACAATTTCAAAAACCCACAACACAAAAGTTCGAATCAATGACTCTTCTCTTTCCACTACATTCAGACCATCGGTTAGCTCAATCATCATATCTTCACTTTCAATAATATTAGCAGTGATGTATTCCATTCTTTGATTGCTTCCATTTTTCCACGACTTCAAAAACGTGTTCCATTCTGTCGGTGTGAATTCAGATGTATCAAGTTGAATGTGTTTGCAGTCCGAATTCGAAATGTCTTTCAGGGACATCCAGTTGTTTGATGGATGATCAGTAACACTCAAAAAGTCGCATTTGAATTTCGGATGAAGAGGTCGCATTCCATCAGGTAAAGTGTCGACGTAGATGACGAAGGACTCGACGACGTTCATATTTTTCAGA</canonical>
            <polymorphic>CATTCAACGATGATTTAAAACAGAATAAGAAGTTATAAATTATTGTAACACCTGTAATAGAAGGGCTTCTTAACTTTCAACTTTGATCTAATTTTTTTGGTTCCTATGAGAGATATGAGAAATTTTTTGTCAGTTGACACATTTTTGAAATTTTTCGTAGGAACTGAGATAATTGAGCTCAAACTTGACAGTGTGGAAAAAAATTACAAAACTTCGTATCAAGAAATCAAATACAATAGATATAAAAATACAGTTTAACAAATACAGTAAAAACTCTATTAGAAAGTCATGGCACTATATTGCCCGGTGGGTGTCTAGGGTGGCACTGTATTAGGGGGTGGCACTATATTAGAGGCTGGCATTCAATTAAGGGAGGCTATCTAATAGAGTTTTTACGATAACAGCGAAAAAGGAATAATCAAAAATACGTAAGATCTTAATTAGTACCTTCTGGCCATACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCATCATTSTCATGCATTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCGTTTTATATCCAGCCCTCCGAAAAAAGCGCACGGCGTTGAAACGCTGTAATTATAGAAATTAACATTTCAGCAACAATTTCAAAAACCCACAACACAAAAGTTCGAATCAATGACTCTTCTCTTTCCACTACATTCAGACCATCGGTTAGCTCAATCATCATATCTTCACTTTCAATAATATTAGCAGTGATGTATTCCATTCTTTGATTGCTTCCATTTTTCCACGACTTCAAAAACGTGTTCCATTCTGTCGGTGTGAATTCAGATGTATCAAGTTGAATGTGTTTGCAGTCCGAATTCGAAATGTCTTTCAGGGACATCCAGTTGTTTGATGGATGATCAGTAACACTCAAAAAGTCGCATTTGAATTTCGGATGAAGAGGTCGCATTCCATCAGGTAAAGTGTCGACGTAGATGACGAAGGACTCGACGACGTTCATATTTTTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTGGCCATACGACTACT</pcr_primer_p1>
		<pcr_primer_p2>GTCTGAATGTAGTGGAAAGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CTTCTGGCCATACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCATCATTGTCATGCATTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCGTTTTATATCCAGCCCTCCGAAAAAAGCGCACGGCGTTGAAACGCTGTAATTATAGAAATTAACATTTCAGCAACAATTTCAAAAACCCACAACACAAAAGTTCGAATCAATGACTCTTCTCTTTCCACTACATTCAGAC</canonical_amplicon>
		<polymorphic_amplicon>CTTCTGGCCATACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCATCATTSTCATGCATTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCGTTTTATATCCAGCCCTCCGAAAAAAGCGCACGGCGTTGAAACGCTGTAATTATAGAAATTAACATTTCAGCAACAATTTCAAAAACCCACAACACAAAAGTTCGAATCAATGACTCTTCTCTTTCCACTACATTCAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7804</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>193288</contig_pos>
        <strand>+</strand>
        <context>CCGTCRTCAT[G/T]STCATGYAWT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCTGGCCATACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCATCAT</left_flank>
        <right_flank>GTCATGCATTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATTCAACGATGATTTAAAACAGAATAAGAAGTTATAAATTATTGTAACACCTGTAATAGAAGGGCTTCTTAACTTTCAACTTTGATCTAATTTTTTTGGTTCCTATGAGAGATATGAGAAATTTTTTGTCAGTTGACACATTTTTGAAATTTTTCGTAGGAACTGAGATAATTGAGCTCAAACTTGACAGTGTGGAAAAAAATTACAAAACTTCGTATCAAGAAATCAAATACAATAGATATAAAAATACAGTTTAACAAATACAGTAAAAACTCTATTAGAAAGTCATGGCACTATATTGCCCGGTGGGTGTCTAGGGTGGCACTGTATTAGGGGGTGGCACTATATTAGAGGCTGGCATTCAATTAAGGGAGGCTATCTAATAGAGTTTTTACGATAACAGCGAAAAAGGAATAATCAAAAATACGTAAGATCTTAATTAGTACCTTCTGGCCATACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCATCATTGTCATGCATTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCGTTTTATATCCAGCCCTCCGAAAAAAGCGCACGGCGTTGAAACGCTGTAATTATAGAAATTAACATTTCAGCAACAATTTCAAAAACCCACAACACAAAAGTTCGAATCAATGACTCTTCTCTTTCCACTACATTCAGACCATCGGTTAGCTCAATCATCATATCTTCACTTTCAATAATATTAGCAGTGATGTATTCCATTCTTTGATTGCTTCCATTTTTCCACGACTTCAAAAACGTGTTCCATTCTGTCGGTGTGAATTCAGATGTATCAAGTTGAATGTGTTTGCAGTCCGAATTCGAAATGTCTTTCAGGGACATCCAGTTGTTTGATGGATGATCAGTAACACTCAAAAAGTCGCATTTGAATTTCGGATGAAGAGGTCGCATTCCATCAGGTAAAGTGTCGACGTAGATGACGAAGGACTCGACGACGTTCATATTTTTCAG</canonical>
            <polymorphic>ACATTCAACGATGATTTAAAACAGAATAAGAAGTTATAAATTATTGTAACACCTGTAATAGAAGGGCTTCTTAACTTTCAACTTTGATCTAATTTTTTTGGTTCCTATGAGAGATATGAGAAATTTTTTGTCAGTTGACACATTTTTGAAATTTTTCGTAGGAACTGAGATAATTGAGCTCAAACTTGACAGTGTGGAAAAAAATTACAAAACTTCGTATCAAGAAATCAAATACAATAGATATAAAAATACAGTTTAACAAATACAGTAAAAACTCTATTAGAAAGTCATGGCACTATATTGCCCGGTGGGTGTCTAGGGTGGCACTGTATTAGGGGGTGGCACTATATTAGAGGCTGGCATTCAATTAAGGGAGGCTATCTAATAGAGTTTTTACGATAACAGCGAAAAAGGAATAATCAAAAATACGTAAGATCTTAATTAGTACCTTCTGGCCATACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCATCATKGTCATGCATTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCGTTTTATATCCAGCCCTCCGAAAAAAGCGCACGGCGTTGAAACGCTGTAATTATAGAAATTAACATTTCAGCAACAATTTCAAAAACCCACAACACAAAAGTTCGAATCAATGACTCTTCTCTTTCCACTACATTCAGACCATCGGTTAGCTCAATCATCATATCTTCACTTTCAATAATATTAGCAGTGATGTATTCCATTCTTTGATTGCTTCCATTTTTCCACGACTTCAAAAACGTGTTCCATTCTGTCGGTGTGAATTCAGATGTATCAAGTTGAATGTGTTTGCAGTCCGAATTCGAAATGTCTTTCAGGGACATCCAGTTGTTTGATGGATGATCAGTAACACTCAAAAAGTCGCATTTGAATTTCGGATGAAGAGGTCGCATTCCATCAGGTAAAGTGTCGACGTAGATGACGAAGGACTCGACGACGTTCATATTTTTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTGGCCATACGACTACT</pcr_primer_p1>
		<pcr_primer_p2>GTCTGAATGTAGTGGAAAGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CTTCTGGCCATACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCATCATTGTCATGCATTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCGTTTTATATCCAGCCCTCCGAAAAAAGCGCACGGCGTTGAAACGCTGTAATTATAGAAATTAACATTTCAGCAACAATTTCAAAAACCCACAACACAAAAGTTCGAATCAATGACTCTTCTCTTTCCACTACATTCAGAC</canonical_amplicon>
		<polymorphic_amplicon>CTTCTGGCCATACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCATCATKGTCATGCATTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCGTTTTATATCCAGCCCTCCGAAAAAAGCGCACGGCGTTGAAACGCTGTAATTATAGAAATTAACATTTCAGCAACAATTTCAAAAACCCACAACACAAAAGTTCGAATCAATGACTCTTCTCTTTCCACTACATTCAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7805</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>193283</contig_pos>
        <strand>+</strand>
        <context>GTTTTCCGTC[A/G]TCATKSTCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTACCTTCTGGCCATACGACTACTGTAAGTGCACGAATTTGTTTTCCGTC</left_flank>
        <right_flank>TCATTGTCATGCATTATTGGTCCAATTACAACCGATGCAACTTTCTCATC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACCAACATTCAACGATGATTTAAAACAGAATAAGAAGTTATAAATTATTGTAACACCTGTAATAGAAGGGCTTCTTAACTTTCAACTTTGATCTAATTTTTTTGGTTCCTATGAGAGATATGAGAAATTTTTTGTCAGTTGACACATTTTTGAAATTTTTCGTAGGAACTGAGATAATTGAGCTCAAACTTGACAGTGTGGAAAAAAATTACAAAACTTCGTATCAAGAAATCAAATACAATAGATATAAAAATACAGTTTAACAAATACAGTAAAAACTCTATTAGAAAGTCATGGCACTATATTGCCCGGTGGGTGTCTAGGGTGGCACTGTATTAGGGGGTGGCACTATATTAGAGGCTGGCATTCAATTAAGGGAGGCTATCTAATAGAGTTTTTACGATAACAGCGAAAAAGGAATAATCAAAAATACGTAAGATCTTAATTAGTACCTTCTGGCCATACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCATCATTGTCATGCATTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCGTTTTATATCCAGCCCTCCGAAAAAAGCGCACGGCGTTGAAACGCTGTAATTATAGAAATTAACATTTCAGCAACAATTTCAAAAACCCACAACACAAAAGTTCGAATCAATGACTCTTCTCTTTCCACTACATTCAGACCATCGGTTAGCTCAATCATCATATCTTCACTTTCAATAATATTAGCAGTGATGTATTCCATTCTTTGATTGCTTCCATTTTTCCACGACTTCAAAAACGTGTTCCATTCTGTCGGTGTGAATTCAGATGTATCAAGTTGAATGTGTTTGCAGTCCGAATTCGAAATGTCTTTCAGGGACATCCAGTTGTTTGATGGATGATCAGTAACACTCAAAAAGTCGCATTTGAATTTCGGATGAAGAGGTCGCATTCCATCAGGTAAAGTGTCGACGTAGATGACGAAGGACTCGACGACGTTCATATTT</canonical>
            <polymorphic>GACCAACATTCAACGATGATTTAAAACAGAATAAGAAGTTATAAATTATTGTAACACCTGTAATAGAAGGGCTTCTTAACTTTCAACTTTGATCTAATTTTTTTGGTTCCTATGAGAGATATGAGAAATTTTTTGTCAGTTGACACATTTTTGAAATTTTTCGTAGGAACTGAGATAATTGAGCTCAAACTTGACAGTGTGGAAAAAAATTACAAAACTTCGTATCAAGAAATCAAATACAATAGATATAAAAATACAGTTTAACAAATACAGTAAAAACTCTATTAGAAAGTCATGGCACTATATTGCCCGGTGGGTGTCTAGGGTGGCACTGTATTAGGGGGTGGCACTATATTAGAGGCTGGCATTCAATTAAGGGAGGCTATCTAATAGAGTTTTTACGATAACAGCGAAAAAGGAATAATCAAAAATACGTAAGATCTTAATTAGTACCTTCTGGCCATACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCRTCATTGTCATGCATTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCGTTTTATATCCAGCCCTCCGAAAAAAGCGCACGGCGTTGAAACGCTGTAATTATAGAAATTAACATTTCAGCAACAATTTCAAAAACCCACAACACAAAAGTTCGAATCAATGACTCTTCTCTTTCCACTACATTCAGACCATCGGTTAGCTCAATCATCATATCTTCACTTTCAATAATATTAGCAGTGATGTATTCCATTCTTTGATTGCTTCCATTTTTCCACGACTTCAAAAACGTGTTCCATTCTGTCGGTGTGAATTCAGATGTATCAAGTTGAATGTGTTTGCAGTCCGAATTCGAAATGTCTTTCAGGGACATCCAGTTGTTTGATGGATGATCAGTAACACTCAAAAAGTCGCATTTGAATTTCGGATGAAGAGGTCGCATTCCATCAGGTAAAGTGTCGACGTAGATGACGAAGGACTCGACGACGTTCATATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCGAAAAAGGAATAATCA</pcr_primer_p1>
		<pcr_primer_p2>AACTTTTGTGTTGTGGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAGCGAAAAAGGAATAATCAAAAATACGTAAGATCTTAATTAGTACCTTCTGGCCATACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCATCATTGTCATGCATTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCGTTTTATATCCAGCCCTCCGAAAAAAGCGCACGGCGTTGAAACGCTGTAATTATAGAAATTAACATTTCAGCAACAATTTCAAAAACCCACAACACAAAAGTT</canonical_amplicon>
		<polymorphic_amplicon>CAGCGAAAAAGGAATAATCAAAAATACGTAAGATCTTAATTAGTACCTTCTGGCCATACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCRTCATTGTCATGCATTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCGTTTTATATCCAGCCCTCCGAAAAAAGCGCACGGCGTTGAAACGCTGTAATTATAGAAATTAACATTTCAGCAACAATTTCAAAAACCCACAACACAAAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7806</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>193218</contig_pos>
        <strand>+</strand>
        <context>TCAAAAAYAM[A/G]TAAGRTCTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCTAATAGAGTTTTTACGATAACAGCGAAAAAGGAATAATCAAAAATAC</left_flank>
        <right_flank>TAAGATCTTAATTAGTACCTTCTGGCCATACGACTACTGTAAGTGCACGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAAGCTCTGAAAAAATAATTTTTATTTGATTTCAAACAAGACGAAATGGAAATTCAAAAGTTAGACCAACATTCAACGATGATTTAAAACAGAATAAGAAGTTATAAATTATTGTAACACCTGTAATAGAAGGGCTTCTTAACTTTCAACTTTGATCTAATTTTTTTGGTTCCTATGAGAGATATGAGAAATTTTTTGTCAGTTGACACATTTTTGAAATTTTTCGTAGGAACTGAGATAATTGAGCTCAAACTTGACAGTGTGGAAAAAAATTACAAAACTTCGTATCAAGAAATCAAATACAATAGATATAAAAATACAGTTTAACAAATACAGTAAAAACTCTATTAGAAAGTCATGGCACTATATTGCCCGGTGGGTGTCTAGGGTGGCACTGTATTAGGGGGTGGCACTATATTAGAGGCTGGCATTCAATTAAGGGAGGCTATCTAATAGAGTTTTTACGATAACAGCGAAAAAGGAATAATCAAAAATACGTAAGATCTTAATTAGTACCTTCTGGCCATACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCATCATTGTCATGCATTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCGTTTTATATCCAGCCCTCCGAAAAAAGCGCACGGCGTTGAAACGCTGTAATTATAGAAATTAACATTTCAGCAACAATTTCAAAAACCCACAACACAAAAGTTCGAATCAATGACTCTTCTCTTTCCACTACATTCAGACCATCGGTTAGCTCAATCATCATATCTTCACTTTCAATAATATTAGCAGTGATGTATTCCATTCTTTGATTGCTTCCATTTTTCCACGACTTCAAAAACGTGTTCCATTCTGTCGGTGTGAATTCAGATGTATCAAGTTGAATGTGTTTGCAGTCCGAATTCGAAATGTCTTTCAGGGACATCCAGTTGTTTGATGGATGATCAGTAACACTCAAAAAGTCGCATTTGAATTTCGGATGAA</canonical>
            <polymorphic>ATGAAGCTCTGAAAAAATAATTTTTATTTGATTTCAAACAAGACGAAATGGAAATTCAAAAGTTAGACCAACATTCAACGATGATTTAAAACAGAATAAGAAGTTATAAATTATTGTAACACCTGTAATAGAAGGGCTTCTTAACTTTCAACTTTGATCTAATTTTTTTGGTTCCTATGAGAGATATGAGAAATTTTTTGTCAGTTGACACATTTTTGAAATTTTTCGTAGGAACTGAGATAATTGAGCTCAAACTTGACAGTGTGGAAAAAAATTACAAAACTTCGTATCAAGAAATCAAATACAATAGATATAAAAATACAGTTTAACAAATACAGTAAAAACTCTATTAGAAAGTCATGGCACTATATTGCCCGGTGGGTGTCTAGGGTGGCACTGTATTAGGGGGTGGCACTATATTAGAGGCTGGCATTCAATTAAGGGAGGCTATCTAATAGAGTTTTTACGATAACAGCGAAAAAGGAATAATCAAAAATACRTAAGATCTTAATTAGTACCTTCTGGCCATACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCATCATTGTCATGCATTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCGTTTTATATCCAGCCCTCCGAAAAAAGCGCACGGCGTTGAAACGCTGTAATTATAGAAATTAACATTTCAGCAACAATTTCAAAAACCCACAACACAAAAGTTCGAATCAATGACTCTTCTCTTTCCACTACATTCAGACCATCGGTTAGCTCAATCATCATATCTTCACTTTCAATAATATTAGCAGTGATGTATTCCATTCTTTGATTGCTTCCATTTTTCCACGACTTCAAAAACGTGTTCCATTCTGTCGGTGTGAATTCAGATGTATCAAGTTGAATGTGTTTGCAGTCCGAATTCGAAATGTCTTTCAGGGACATCCAGTTGTTTGATGGATGATCAGTAACACTCAAAAAGTCGCATTTGAATTTCGGATGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TACGTA</site>
                <isoschizomers>
                    <enzyme>BstSNI</enzyme>
                    <enzyme>Eco105I</enzyme>
                    <enzyme>SnaBI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>498 359 143</canonical_bands>
                <polymorphic_bands>857 143</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGTATCAAGAAATCAAATACAA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCGTGCACTTACAGTAGTC</pcr_primer_p2>
		<pcr_amplicon_size>270</pcr_amplicon_size>
		<canonical_amplicon>TCGTATCAAGAAATCAAATACAATAGATATAAAAATACAGTTTAACAAATACAGTAAAAACTCTATTAGAAAGTCATGGCACTATATTGCCCGGTGGGTGTCTAGGGTGGCACTGTATTAGGGGGTGGCACTATATTAGAGGCTGGCATTCAATTAAGGGAGGCTATCTAATAGAGTTTTTACGATAACAGCGAAAAAGGAATAATCAAAAATACGTAAGATCTTAATTAGTACCTTCTGGCCATACGACTACTGTAAGTGCACGAATTT</canonical_amplicon>
		<polymorphic_amplicon>TCGTATCAAGAAATCAAATACAATAGATATAAAAATACAGTTTAACAAATACAGTAAAAACTCTATTAGAAAGTCATGGCACTATATTGCCCGGTGGGTGTCTAGGGTGGCACTGTATTAGGGGGTGGCACTATATTAGAGGCTGGCATTCAATTAAGGGAGGCTATCTAATAGAGTTTTTACGATAACAGCGAAAAAGGAATAATCAAAAATACRTAAGATCTTAATTAGTACCTTCTGGCCATACGACTACTGTAAGTGCACGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7807</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>193217</contig_pos>
        <strand>+</strand>
        <context>ATCAAAAAYA[A/C]RTAAGRTCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATCTAATAGAGTTTTTACGATAACAGCGAAAAAGGAATAATCAAAAATA</left_flank>
        <right_flank>GTAAGATCTTAATTAGTACCTTCTGGCCATACGACTACTGTAAGTGCACG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGAAGCTCTGAAAAAATAATTTTTATTTGATTTCAAACAAGACGAAATGGAAATTCAAAAGTTAGACCAACATTCAACGATGATTTAAAACAGAATAAGAAGTTATAAATTATTGTAACACCTGTAATAGAAGGGCTTCTTAACTTTCAACTTTGATCTAATTTTTTTGGTTCCTATGAGAGATATGAGAAATTTTTTGTCAGTTGACACATTTTTGAAATTTTTCGTAGGAACTGAGATAATTGAGCTCAAACTTGACAGTGTGGAAAAAAATTACAAAACTTCGTATCAAGAAATCAAATACAATAGATATAAAAATACAGTTTAACAAATACAGTAAAAACTCTATTAGAAAGTCATGGCACTATATTGCCCGGTGGGTGTCTAGGGTGGCACTGTATTAGGGGGTGGCACTATATTAGAGGCTGGCATTCAATTAAGGGAGGCTATCTAATAGAGTTTTTACGATAACAGCGAAAAAGGAATAATCAAAAATACGTAAGATCTTAATTAGTACCTTCTGGCCATACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCATCATTGTCATGCATTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCGTTTTATATCCAGCCCTCCGAAAAAAGCGCACGGCGTTGAAACGCTGTAATTATAGAAATTAACATTTCAGCAACAATTTCAAAAACCCACAACACAAAAGTTCGAATCAATGACTCTTCTCTTTCCACTACATTCAGACCATCGGTTAGCTCAATCATCATATCTTCACTTTCAATAATATTAGCAGTGATGTATTCCATTCTTTGATTGCTTCCATTTTTCCACGACTTCAAAAACGTGTTCCATTCTGTCGGTGTGAATTCAGATGTATCAAGTTGAATGTGTTTGCAGTCCGAATTCGAAATGTCTTTCAGGGACATCCAGTTGTTTGATGGATGATCAGTAACACTCAAAAAGTCGCATTTGAATTTCGGATGA</canonical>
            <polymorphic>AATGAAGCTCTGAAAAAATAATTTTTATTTGATTTCAAACAAGACGAAATGGAAATTCAAAAGTTAGACCAACATTCAACGATGATTTAAAACAGAATAAGAAGTTATAAATTATTGTAACACCTGTAATAGAAGGGCTTCTTAACTTTCAACTTTGATCTAATTTTTTTGGTTCCTATGAGAGATATGAGAAATTTTTTGTCAGTTGACACATTTTTGAAATTTTTCGTAGGAACTGAGATAATTGAGCTCAAACTTGACAGTGTGGAAAAAAATTACAAAACTTCGTATCAAGAAATCAAATACAATAGATATAAAAATACAGTTTAACAAATACAGTAAAAACTCTATTAGAAAGTCATGGCACTATATTGCCCGGTGGGTGTCTAGGGTGGCACTGTATTAGGGGGTGGCACTATATTAGAGGCTGGCATTCAATTAAGGGAGGCTATCTAATAGAGTTTTTACGATAACAGCGAAAAAGGAATAATCAAAAATAMGTAAGATCTTAATTAGTACCTTCTGGCCATACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCATCATTGTCATGCATTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCGTTTTATATCCAGCCCTCCGAAAAAAGCGCACGGCGTTGAAACGCTGTAATTATAGAAATTAACATTTCAGCAACAATTTCAAAAACCCACAACACAAAAGTTCGAATCAATGACTCTTCTCTTTCCACTACATTCAGACCATCGGTTAGCTCAATCATCATATCTTCACTTTCAATAATATTAGCAGTGATGTATTCCATTCTTTGATTGCTTCCATTTTTCCACGACTTCAAAAACGTGTTCCATTCTGTCGGTGTGAATTCAGATGTATCAAGTTGAATGTGTTTGCAGTCCGAATTCGAAATGTCTTTCAGGGACATCCAGTTGTTTGATGGATGATCAGTAACACTCAAAAAGTCGCATTTGAATTTCGGATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TACGTA</site>
                <isoschizomers>
                    <enzyme>BstSNI</enzyme>
                    <enzyme>Eco105I</enzyme>
                    <enzyme>SnaBI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>499 359 142</canonical_bands>
                <polymorphic_bands>858 142</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGTATCAAGAAATCAAATACAA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCGTGCACTTACAGTAGTC</pcr_primer_p2>
		<pcr_amplicon_size>270</pcr_amplicon_size>
		<canonical_amplicon>TCGTATCAAGAAATCAAATACAATAGATATAAAAATACAGTTTAACAAATACAGTAAAAACTCTATTAGAAAGTCATGGCACTATATTGCCCGGTGGGTGTCTAGGGTGGCACTGTATTAGGGGGTGGCACTATATTAGAGGCTGGCATTCAATTAAGGGAGGCTATCTAATAGAGTTTTTACGATAACAGCGAAAAAGGAATAATCAAAAATACGTAAGATCTTAATTAGTACCTTCTGGCCATACGACTACTGTAAGTGCACGAATTT</canonical_amplicon>
		<polymorphic_amplicon>TCGTATCAAGAAATCAAATACAATAGATATAAAAATACAGTTTAACAAATACAGTAAAAACTCTATTAGAAAGTCATGGCACTATATTGCCCGGTGGGTGTCTAGGGTGGCACTGTATTAGGGGGTGGCACTATATTAGAGGCTGGCATTCAATTAAGGGAGGCTATCTAATAGAGTTTTTACGATAACAGCGAAAAAGGAATAATCAAAAATAMGTAAGATCTTAATTAGTACCTTCTGGCCATACGACTACTGTAAGTGCACGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7814</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>204667</contig_pos>
        <strand>+</strand>
        <context>CGTCTCCCCC[C/T]TTCTTTCATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATAAGAATCCGATCATGATTTCATAACTTCTCTTTGGTCGTCTCCCCC</left_flank>
        <right_flank>TTCTTTCATTTTCAATTTCCTGAATCGATCTTTTCGATGGTATCACTGGC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGACCAGAGATAACGGAAAGGACAAACGACAGGGGAGATACCGGAATGAACAGAAATCGGAGGCCGTATTCATGAACATTTACTTTTAGGTAAATAGAACGTGTAAATGATTTACAAAAAGTAAAAAAGAAGGCCCCGCAAAGGCCCGGATTACAAGTATGCGTTTACCTAGGTAAATGTTCATGAATACGGCCTCGGAATAAAAGAGAATGGTCAAGAAAACCTTTGTAAATTTTTTGGATCTAACGATTATGATCCGAATTATTATGTTCGGGCAACAGTATAACCGTTCCACCAAAAAGACTCCGAAACGTCTCCTAAAAAGAAAAAAAGGTGAGCCTTAATTTTCATTGAACTGTTATCAGCTTACTTCATATGAGTACCGGATAGACTAACATTTTTTATTCAACAAAAAGTATACAGGAATATACATATATACAAATATATACAAATAAGAATCCGATCATGATTTCATAACTTCTCTTTGGTCGTCTCCCCCTTTCTTTCATTTTCAATTTCCTGAATCGATCTTTTCGATGGTATCACTGGCAAGTATGTCAACCAATGATACTTTAAGAAGAATCTATTGACACATGAAGGAAGTGCATAGCCATTGTGCTTCACATCAGGAATCATTTCTTTTTCGTCATCCTCGTCAAAATCATTATCATCTCTGAATCCACGTTGTTTTCTAGTGGCTCCTGGAGCAATATTGTCAAGTGTGAAAGCGATTAGACCTCCTATTAACATTCTGATGGTTAGAAGAGTTCCGAAGACGTCATCCACTGTTTTGTTTCCAGTATTCAAAGGCGTCTTTTCAAAATGGGTGGCCGTGGTAATTGCCATAATGATAGCAATTCCAATTATAGTCAAATTTCTGGATATCTTCATATCGACGGTCTGCAAAAGTATTAAACGCTGTTGTGAAAAACAGTTATTCCAACATACTTGTAAATTGCTCAGCGAAACTCCGTTGATTAGAGAGACACCCATAGCCAAA</canonical>
            <polymorphic>GGACCAGAGATAACGGAAAGGACAAACGACAGGGGAGATACCGGAATGAACAGAAATCGGAGGCCGTATTCATGAACATTTACTTTTAGGTAAATAGAACGTGTAAATGATTTACAAAAAGTAAAAAAGAAGGCCCCGCAAAGGCCCGGATTACAAGTATGCGTTTACCTAGGTAAATGTTCATGAATACGGCCTCGGAATAAAAGAGAATGGTCAAGAAAACCTTTGTAAATTTTTTGGATCTAACGATTATGATCCGAATTATTATGTTCGGGCAACAGTATAACCGTTCCACCAAAAAGACTCCGAAACGTCTCCTAAAAAGAAAAAAAGGTGAGCCTTAATTTTCATTGAACTGTTATCAGCTTACTTCATATGAGTACCGGATAGACTAACATTTTTTATTCAACAAAAAGTATACAGGAATATACATATATACAAATATATACAAATAAGAATCCGATCATGATTTCATAACTTCTCTTTGGTCGTCTCCCCCYTTCTTTCATTTTCAATTTCCTGAATCGATCTTTTCGATGGTATCACTGGCAAGTATGTCAACCAATGATACTTTAAGAAGAATCTATTGACACATGAAGGAAGTGCATAGCCATTGTGCTTCACATCAGGAATCATTTCTTTTTCGTCATCCTCGTCAAAATCATTATCATCTCTGAATCCACGTTGTTTTCTAGTGGCTCCTGGAGCAATATTGTCAAGTGTGAAAGCGATTAGACCTCCTATTAACATTCTGATGGTTAGAAGAGTTCCGAAGACGTCATCCACTGTTTTGTTTCCAGTATTCAAAGGCGTCTTTTCAAAATGGGTGGCCGTGGTAATTGCCATAATGATAGCAATTCCAATTATAGTCAAATTTCTGGATATCTTCATATCGACGGTCTGCAAAAGTATTAAACGCTGTTGTGAAAAACAGTTATTCCAACATACTTGTAAATTGCTCAGCGAAACTCCGTTGATTAGAGAGACACCCATAGCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAACTGTTATCAGCTTACTTCA</pcr_primer_p1>
		<pcr_primer_p2>CCTTCATGTGTCAATAGATTCTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAACTGTTATCAGCTTACTTCATATGAGTACCGGATAGACTAACATTTTTTATTCAACAAAAAGTATACAGGAATATACATATATACAAATATATACAAATAAGAATCCGATCATGATTTCATAACTTCTCTTTGGTCGTCTCCCCCTTTCTTTCATTTTCAATTTCCTGAATCGATCTTTTCGATGGTATCACTGGCAAGTATGTCAACCAATGATACTTTAAGAAGAATCTATTGACACATGAAGG</canonical_amplicon>
		<polymorphic_amplicon>TGAACTGTTATCAGCTTACTTCATATGAGTACCGGATAGACTAACATTTTTTATTCAACAAAAAGTATACAGGAATATACATATATACAAATATATACAAATAAGAATCCGATCATGATTTCATAACTTCTCTTTGGTCGTCTCCCCCYTTCTTTCATTTTCAATTTCCTGAATCGATCTTTTCGATGGTATCACTGGCAAGTATGTCAACCAATGATACTTTAAGAAGAATCTATTGACACATGAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7815</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>204642</contig_pos>
        <strand>+</strand>
        <context>CATGATTTCA[A/T]AACTTCTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATATACATATATACAAATATATACAAATAAGAATCCGATCATGATTTCA</left_flank>
        <right_flank>AACTTCTCTTTGGTCGTCTCCCCCTTTCTTTCATTTTCAATTTCCTGAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAACTGAATAAAAAGAATACGGGGGACCAGAGATAACGGAAAGGACAAACGACAGGGGAGATACCGGAATGAACAGAAATCGGAGGCCGTATTCATGAACATTTACTTTTAGGTAAATAGAACGTGTAAATGATTTACAAAAAGTAAAAAAGAAGGCCCCGCAAAGGCCCGGATTACAAGTATGCGTTTACCTAGGTAAATGTTCATGAATACGGCCTCGGAATAAAAGAGAATGGTCAAGAAAACCTTTGTAAATTTTTTGGATCTAACGATTATGATCCGAATTATTATGTTCGGGCAACAGTATAACCGTTCCACCAAAAAGACTCCGAAACGTCTCCTAAAAAGAAAAAAAGGTGAGCCTTAATTTTCATTGAACTGTTATCAGCTTACTTCATATGAGTACCGGATAGACTAACATTTTTTATTCAACAAAAAGTATACAGGAATATACATATATACAAATATATACAAATAAGAATCCGATCATGATTTCATAACTTCTCTTTGGTCGTCTCCCCCTTTCTTTCATTTTCAATTTCCTGAATCGATCTTTTCGATGGTATCACTGGCAAGTATGTCAACCAATGATACTTTAAGAAGAATCTATTGACACATGAAGGAAGTGCATAGCCATTGTGCTTCACATCAGGAATCATTTCTTTTTCGTCATCCTCGTCAAAATCATTATCATCTCTGAATCCACGTTGTTTTCTAGTGGCTCCTGGAGCAATATTGTCAAGTGTGAAAGCGATTAGACCTCCTATTAACATTCTGATGGTTAGAAGAGTTCCGAAGACGTCATCCACTGTTTTGTTTCCAGTATTCAAAGGCGTCTTTTCAAAATGGGTGGCCGTGGTAATTGCCATAATGATAGCAATTCCAATTATAGTCAAATTTCTGGATATCTTCATATCGACGGTCTGCAAAAGTATTAAACGCTGTTGTGAAAAACAGTTATTCCAACATACTTGTAAATTGCTCAGCGAAACTCCGTT</canonical>
            <polymorphic>AACAACTGAATAAAAAGAATACGGGGGACCAGAGATAACGGAAAGGACAAACGACAGGGGAGATACCGGAATGAACAGAAATCGGAGGCCGTATTCATGAACATTTACTTTTAGGTAAATAGAACGTGTAAATGATTTACAAAAAGTAAAAAAGAAGGCCCCGCAAAGGCCCGGATTACAAGTATGCGTTTACCTAGGTAAATGTTCATGAATACGGCCTCGGAATAAAAGAGAATGGTCAAGAAAACCTTTGTAAATTTTTTGGATCTAACGATTATGATCCGAATTATTATGTTCGGGCAACAGTATAACCGTTCCACCAAAAAGACTCCGAAACGTCTCCTAAAAAGAAAAAAAGGTGAGCCTTAATTTTCATTGAACTGTTATCAGCTTACTTCATATGAGTACCGGATAGACTAACATTTTTTATTCAACAAAAAGTATACAGGAATATACATATATACAAATATATACAAATAAGAATCCGATCATGATTTCAWAACTTCTCTTTGGTCGTCTCCCCCTTTCTTTCATTTTCAATTTCCTGAATCGATCTTTTCGATGGTATCACTGGCAAGTATGTCAACCAATGATACTTTAAGAAGAATCTATTGACACATGAAGGAAGTGCATAGCCATTGTGCTTCACATCAGGAATCATTTCTTTTTCGTCATCCTCGTCAAAATCATTATCATCTCTGAATCCACGTTGTTTTCTAGTGGCTCCTGGAGCAATATTGTCAAGTGTGAAAGCGATTAGACCTCCTATTAACATTCTGATGGTTAGAAGAGTTCCGAAGACGTCATCCACTGTTTTGTTTCCAGTATTCAAAGGCGTCTTTTCAAAATGGGTGGCCGTGGTAATTGCCATAATGATAGCAATTCCAATTATAGTCAAATTTCTGGATATCTTCATATCGACGGTCTGCAAAAGTATTAAACGCTGTTGTGAAAAACAGTTATTCCAACATACTTGTAAATTGCTCAGCGAAACTCCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAACTGTTATCAGCTTACTTCA</pcr_primer_p1>
		<pcr_primer_p2>CCTTCATGTGTCAATAGATTCTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAACTGTTATCAGCTTACTTCATATGAGTACCGGATAGACTAACATTTTTTATTCAACAAAAAGTATACAGGAATATACATATATACAAATATATACAAATAAGAATCCGATCATGATTTCATAACTTCTCTTTGGTCGTCTCCCCCTTTCTTTCATTTTCAATTTCCTGAATCGATCTTTTCGATGGTATCACTGGCAAGTATGTCAACCAATGATACTTTAAGAAGAATCTATTGACACATGAAGG</canonical_amplicon>
		<polymorphic_amplicon>TGAACTGTTATCAGCTTACTTCATATGAGTACCGGATAGACTAACATTTTTTATTCAACAAAAAGTATACAGGAATATACATATATACAAATATATACAAATAAGAATCCGATCATGATTTCAWAACTTCTCTTTGGTCGTCTCCCCCTTTCTTTCATTTTCAATTTCCTGAATCGATCTTTTCGATGGTATCACTGGCAAGTATGTCAACCAATGATACTTTAAGAAGAATCTATTGACACATGAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7816</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>204580</contig_pos>
        <strand>+</strand>
        <context>TATTCAACAA[A/G]AAGTATACAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGCTTACTTCATATGAGTACCGGATAGACTAACATTTTTTATTCAACAA</left_flank>
        <right_flank>AAGTATACAGGAATATACATATATACAAATATATACAAATAAGAATCCGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATTCCGTACATGTGTGAGGTAAGCGGCGCGAATGCAAAACAGTATACTAATGAGTTCCTAACAACTGAATAAAAAGAATACGGGGGACCAGAGATAACGGAAAGGACAAACGACAGGGGAGATACCGGAATGAACAGAAATCGGAGGCCGTATTCATGAACATTTACTTTTAGGTAAATAGAACGTGTAAATGATTTACAAAAAGTAAAAAAGAAGGCCCCGCAAAGGCCCGGATTACAAGTATGCGTTTACCTAGGTAAATGTTCATGAATACGGCCTCGGAATAAAAGAGAATGGTCAAGAAAACCTTTGTAAATTTTTTGGATCTAACGATTATGATCCGAATTATTATGTTCGGGCAACAGTATAACCGTTCCACCAAAAAGACTCCGAAACGTCTCCTAAAAAGAAAAAAAGGTGAGCCTTAATTTTCATTGAACTGTTATCAGCTTACTTCATATGAGTACCGGATAGACTAACATTTTTTATTCAACAAAAAGTATACAGGAATATACATATATACAAATATATACAAATAAGAATCCGATCATGATTTCATAACTTCTCTTTGGTCGTCTCCCCCTTTCTTTCATTTTCAATTTCCTGAATCGATCTTTTCGATGGTATCACTGGCAAGTATGTCAACCAATGATACTTTAAGAAGAATCTATTGACACATGAAGGAAGTGCATAGCCATTGTGCTTCACATCAGGAATCATTTCTTTTTCGTCATCCTCGTCAAAATCATTATCATCTCTGAATCCACGTTGTTTTCTAGTGGCTCCTGGAGCAATATTGTCAAGTGTGAAAGCGATTAGACCTCCTATTAACATTCTGATGGTTAGAAGAGTTCCGAAGACGTCATCCACTGTTTTGTTTCCAGTATTCAAAGGCGTCTTTTCAAAATGGGTGGCCGTGGTAATTGCCATAATGATAGCAATTCCAATTATAGTCAAATTTCTGGATATCTTCATATCGACGGTCTGCAAAAGTATT</canonical>
            <polymorphic>TAAATTCCGTACATGTGTGAGGTAAGCGGCGCGAATGCAAAACAGTATACTAATGAGTTCCTAACAACTGAATAAAAAGAATACGGGGGACCAGAGATAACGGAAAGGACAAACGACAGGGGAGATACCGGAATGAACAGAAATCGGAGGCCGTATTCATGAACATTTACTTTTAGGTAAATAGAACGTGTAAATGATTTACAAAAAGTAAAAAAGAAGGCCCCGCAAAGGCCCGGATTACAAGTATGCGTTTACCTAGGTAAATGTTCATGAATACGGCCTCGGAATAAAAGAGAATGGTCAAGAAAACCTTTGTAAATTTTTTGGATCTAACGATTATGATCCGAATTATTATGTTCGGGCAACAGTATAACCGTTCCACCAAAAAGACTCCGAAACGTCTCCTAAAAAGAAAAAAAGGTGAGCCTTAATTTTCATTGAACTGTTATCAGCTTACTTCATATGAGTACCGGATAGACTAACATTTTTTATTCAACAARAAGTATACAGGAATATACATATATACAAATATATACAAATAAGAATCCGATCATGATTTCATAACTTCTCTTTGGTCGTCTCCCCCTTTCTTTCATTTTCAATTTCCTGAATCGATCTTTTCGATGGTATCACTGGCAAGTATGTCAACCAATGATACTTTAAGAAGAATCTATTGACACATGAAGGAAGTGCATAGCCATTGTGCTTCACATCAGGAATCATTTCTTTTTCGTCATCCTCGTCAAAATCATTATCATCTCTGAATCCACGTTGTTTTCTAGTGGCTCCTGGAGCAATATTGTCAAGTGTGAAAGCGATTAGACCTCCTATTAACATTCTGATGGTTAGAAGAGTTCCGAAGACGTCATCCACTGTTTTGTTTCCAGTATTCAAAGGCGTCTTTTCAAAATGGGTGGCCGTGGTAATTGCCATAATGATAGCAATTCCAATTATAGTCAAATTTCTGGATATCTTCATATCGACGGTCTGCAAAAGTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAACTGTTATCAGCTTACTTCA</pcr_primer_p1>
		<pcr_primer_p2>CCTTCATGTGTCAATAGATTCTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAACTGTTATCAGCTTACTTCATATGAGTACCGGATAGACTAACATTTTTTATTCAACAAAAAGTATACAGGAATATACATATATACAAATATATACAAATAAGAATCCGATCATGATTTCATAACTTCTCTTTGGTCGTCTCCCCCTTTCTTTCATTTTCAATTTCCTGAATCGATCTTTTCGATGGTATCACTGGCAAGTATGTCAACCAATGATACTTTAAGAAGAATCTATTGACACATGAAGG</canonical_amplicon>
		<polymorphic_amplicon>TGAACTGTTATCAGCTTACTTCATATGAGTACCGGATAGACTAACATTTTTTATTCAACAARAAGTATACAGGAATATACATATATACAAATATATACAAATAAGAATCCGATCATGATTTCATAACTTCTCTTTGGTCGTCTCCCCCTTTCTTTCATTTTCAATTTCCTGAATCGATCTTTTCGATGGTATCACTGGCAAGTATGTCAACCAATGATACTTTAAGAAGAATCTATTGACACATGAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7817</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>204437</contig_pos>
        <strand>+</strand>
        <context>AATTATTATG[C/T]TCGGGCAACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACCTTTGTAAATTTTTTGGATCTAACGATTATGATCCGAATTATTATG</left_flank>
        <right_flank>TCGGGCAACAGTATAACCGTTCCACCAAAAAGACTCCGAAACGTCTCCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTATCACCAGCTATGACTACCAGTTTTTTTTGAACAAATAAAGTGCAAAGTAGGTTGTTTGGGGTTATCTTATTGTTTAATAAGTAATTGAGTAACTTAAAAACATTCAGACTTCCGGTACTCAGTGCCTGATGCGTGTCTTAAATTCCGTACATGTGTGAGGTAAGCGGCGCGAATGCAAAACAGTATACTAATGAGTTCCTAACAACTGAATAAAAAGAATACGGGGGACCAGAGATAACGGAAAGGACAAACGACAGGGGAGATACCGGAATGAACAGAAATCGGAGGCCGTATTCATGAACATTTACTTTTAGGTAAATAGAACGTGTAAATGATTTACAAAAAGTAAAAAAGAAGGCCCCGCAAAGGCCCGGATTACAAGTATGCGTTTACCTAGGTAAATGTTCATGAATACGGCCTCGGAATAAAAGAGAATGGTCAAGAAAACCTTTGTAAATTTTTTGGATCTAACGATTATGATCCGAATTATTATGTTCGGGCAACAGTATAACCGTTCCACCAAAAAGACTCCGAAACGTCTCCTAAAAAGAAAAAAAGGTGAGCCTTAATTTTCATTGAACTGTTATCAGCTTACTTCATATGAGTACCGGATAGACTAACATTTTTTATTCAACAAAAAGTATACAGGAATATACATATATACAAATATATACAAATAAGAATCCGATCATGATTTCATAACTTCTCTTTGGTCGTCTCCCCCTTTCTTTCATTTTCAATTTCCTGAATCGATCTTTTCGATGGTATCACTGGCAAGTATGTCAACCAATGATACTTTAAGAAGAATCTATTGACACATGAAGGAAGTGCATAGCCATTGTGCTTCACATCAGGAATCATTTCTTTTTCGTCATCCTCGTCAAAATCATTATCATCTCTGAATCCACGTTGTTTTCTAGTGGCTCCTGGAGCAATATTGTCAAGTGTGAAAGCGATTAGACCTCCTATTAACATTCTGATGGTTAGAAGAGTTC</canonical>
            <polymorphic>AACTATCACCAGCTATGACTACCAGTTTTTTTTGAACAAATAAAGTGCAAAGTAGGTTGTTTGGGGTTATCTTATTGTTTAATAAGTAATTGAGTAACTTAAAAACATTCAGACTTCCGGTACTCAGTGCCTGATGCGTGTCTTAAATTCCGTACATGTGTGAGGTAAGCGGCGCGAATGCAAAACAGTATACTAATGAGTTCCTAACAACTGAATAAAAAGAATACGGGGGACCAGAGATAACGGAAAGGACAAACGACAGGGGAGATACCGGAATGAACAGAAATCGGAGGCCGTATTCATGAACATTTACTTTTAGGTAAATAGAACGTGTAAATGATTTACAAAAAGTAAAAAAGAAGGCCCCGCAAAGGCCCGGATTACAAGTATGCGTTTACCTAGGTAAATGTTCATGAATACGGCCTCGGAATAAAAGAGAATGGTCAAGAAAACCTTTGTAAATTTTTTGGATCTAACGATTATGATCCGAATTATTATGYTCGGGCAACAGTATAACCGTTCCACCAAAAAGACTCCGAAACGTCTCCTAAAAAGAAAAAAAGGTGAGCCTTAATTTTCATTGAACTGTTATCAGCTTACTTCATATGAGTACCGGATAGACTAACATTTTTTATTCAACAAAAAGTATACAGGAATATACATATATACAAATATATACAAATAAGAATCCGATCATGATTTCATAACTTCTCTTTGGTCGTCTCCCCCTTTCTTTCATTTTCAATTTCCTGAATCGATCTTTTCGATGGTATCACTGGCAAGTATGTCAACCAATGATACTTTAAGAAGAATCTATTGACACATGAAGGAAGTGCATAGCCATTGTGCTTCACATCAGGAATCATTTCTTTTTCGTCATCCTCGTCAAAATCATTATCATCTCTGAATCCACGTTGTTTTCTAGTGGCTCCTGGAGCAATATTGTCAAGTGTGAAAGCGATTAGACCTCCTATTAACATTCTGATGGTTAGAAGAGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTACAAGTATGCGTTTACC</pcr_primer_p1>
		<pcr_primer_p2>AATGTTAGTCTATCCGGTACTCA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGATTACAAGTATGCGTTTACCTAGGTAAATGTTCATGAATACGGCCTCGGAATAAAAGAGAATGGTCAAGAAAACCTTTGTAAATTTTTTGGATCTAACGATTATGATCCGAATTATTATGTTCGGGCAACAGTATAACCGTTCCACCAAAAAGACTCCGAAACGTCTCCTAAAAAGAAAAAAAGGTGAGCCTTAATTTTCATTGAACTGTTATCAGCTTACTTCATATGAGTACCGGATAGACTAACATT</canonical_amplicon>
		<polymorphic_amplicon>GGATTACAAGTATGCGTTTACCTAGGTAAATGTTCATGAATACGGCCTCGGAATAAAAGAGAATGGTCAAGAAAACCTTTGTAAATTTTTTGGATCTAACGATTATGATCCGAATTATTATGYTCGGGCAACAGTATAACCGTTCCACCAAAAAGACTCCGAAACGTCTCCTAAAAAGAAAAAAAGGTGAGCCTTAATTTTCATTGAACTGTTATCAGCTTACTTCATATGAGTACCGGATAGACTAACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7818</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>204383</contig_pos>
        <strand>+</strand>
        <context>GAGAATGRTC[A/T]AGAAAACCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TACCTAGGTAAATGTTCATGAATACGGCCTCGGAATAAAAGAGAATGGTC</left_flank>
        <right_flank>AGAAAACCTTTGTAAATTTTTTGGATCTAACGATTATGATCCGAATTATT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCTGATAGCTGGAAATTTCCTCAAAACCTTGTTTGCGTCTTCTGAAGCTATCAACTATCACCAGCTATGACTACCAGTTTTTTTTGAACAAATAAAGTGCAAAGTAGGTTGTTTGGGGTTATCTTATTGTTTAATAAGTAATTGAGTAACTTAAAAACATTCAGACTTCCGGTACTCAGTGCCTGATGCGTGTCTTAAATTCCGTACATGTGTGAGGTAAGCGGCGCGAATGCAAAACAGTATACTAATGAGTTCCTAACAACTGAATAAAAAGAATACGGGGGACCAGAGATAACGGAAAGGACAAACGACAGGGGAGATACCGGAATGAACAGAAATCGGAGGCCGTATTCATGAACATTTACTTTTAGGTAAATAGAACGTGTAAATGATTTACAAAAAGTAAAAAAGAAGGCCCCGCAAAGGCCCGGATTACAAGTATGCGTTTACCTAGGTAAATGTTCATGAATACGGCCTCGGAATAAAAGAGAATGGTCAAGAAAACCTTTGTAAATTTTTTGGATCTAACGATTATGATCCGAATTATTATGTTCGGGCAACAGTATAACCGTTCCACCAAAAAGACTCCGAAACGTCTCCTAAAAAGAAAAAAAGGTGAGCCTTAATTTTCATTGAACTGTTATCAGCTTACTTCATATGAGTACCGGATAGACTAACATTTTTTATTCAACAAAAAGTATACAGGAATATACATATATACAAATATATACAAATAAGAATCCGATCATGATTTCATAACTTCTCTTTGGTCGTCTCCCCCTTTCTTTCATTTTCAATTTCCTGAATCGATCTTTTCGATGGTATCACTGGCAAGTATGTCAACCAATGATACTTTAAGAAGAATCTATTGACACATGAAGGAAGTGCATAGCCATTGTGCTTCACATCAGGAATCATTTCTTTTTCGTCATCCTCGTCAAAATCATTATCATCTCTGAATCCACGTTGTTTTCTAGTGGCTCCTGGAGCAATATTGT</canonical>
            <polymorphic>GCTCTGATAGCTGGAAATTTCCTCAAAACCTTGTTTGCGTCTTCTGAAGCTATCAACTATCACCAGCTATGACTACCAGTTTTTTTTGAACAAATAAAGTGCAAAGTAGGTTGTTTGGGGTTATCTTATTGTTTAATAAGTAATTGAGTAACTTAAAAACATTCAGACTTCCGGTACTCAGTGCCTGATGCGTGTCTTAAATTCCGTACATGTGTGAGGTAAGCGGCGCGAATGCAAAACAGTATACTAATGAGTTCCTAACAACTGAATAAAAAGAATACGGGGGACCAGAGATAACGGAAAGGACAAACGACAGGGGAGATACCGGAATGAACAGAAATCGGAGGCCGTATTCATGAACATTTACTTTTAGGTAAATAGAACGTGTAAATGATTTACAAAAAGTAAAAAAGAAGGCCCCGCAAAGGCCCGGATTACAAGTATGCGTTTACCTAGGTAAATGTTCATGAATACGGCCTCGGAATAAAAGAGAATGGTCWAGAAAACCTTTGTAAATTTTTTGGATCTAACGATTATGATCCGAATTATTATGTTCGGGCAACAGTATAACCGTTCCACCAAAAAGACTCCGAAACGTCTCCTAAAAAGAAAAAAAGGTGAGCCTTAATTTTCATTGAACTGTTATCAGCTTACTTCATATGAGTACCGGATAGACTAACATTTTTTATTCAACAAAAAGTATACAGGAATATACATATATACAAATATATACAAATAAGAATCCGATCATGATTTCATAACTTCTCTTTGGTCGTCTCCCCCTTTCTTTCATTTTCAATTTCCTGAATCGATCTTTTCGATGGTATCACTGGCAAGTATGTCAACCAATGATACTTTAAGAAGAATCTATTGACACATGAAGGAAGTGCATAGCCATTGTGCTTCACATCAGGAATCATTTCTTTTTCGTCATCCTCGTCAAAATCATTATCATCTCTGAATCCACGTTGTTTTCTAGTGGCTCCTGGAGCAATATTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTACAAGTATGCGTTTACC</pcr_primer_p1>
		<pcr_primer_p2>AATGTTAGTCTATCCGGTACTCA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGATTACAAGTATGCGTTTACCTAGGTAAATGTTCATGAATACGGCCTCGGAATAAAAGAGAATGGTCAAGAAAACCTTTGTAAATTTTTTGGATCTAACGATTATGATCCGAATTATTATGTTCGGGCAACAGTATAACCGTTCCACCAAAAAGACTCCGAAACGTCTCCTAAAAAGAAAAAAAGGTGAGCCTTAATTTTCATTGAACTGTTATCAGCTTACTTCATATGAGTACCGGATAGACTAACATT</canonical_amplicon>
		<polymorphic_amplicon>GGATTACAAGTATGCGTTTACCTAGGTAAATGTTCATGAATACGGCCTCGGAATAAAAGAGAATGGTCWAGAAAACCTTTGTAAATTTTTTGGATCTAACGATTATGATCCGAATTATTATGTTCGGGCAACAGTATAACCGTTCCACCAAAAAGACTCCGAAACGTCTCCTAAAAAGAAAAAAAGGTGAGCCTTAATTTTCATTGAACTGTTATCAGCTTACTTCATATGAGTACCGGATAGACTAACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7819</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>204380</contig_pos>
        <strand>+</strand>
        <context>AAAGAGAATG[A/G]TCWAGAAAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTACCTAGGTAAATGTTCATGAATACGGCCTCGGAATAAAAGAGAATG</left_flank>
        <right_flank>TCAAGAAAACCTTTGTAAATTTTTTGGATCTAACGATTATGATCCGAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGCTCTGATAGCTGGAAATTTCCTCAAAACCTTGTTTGCGTCTTCTGAAGCTATCAACTATCACCAGCTATGACTACCAGTTTTTTTTGAACAAATAAAGTGCAAAGTAGGTTGTTTGGGGTTATCTTATTGTTTAATAAGTAATTGAGTAACTTAAAAACATTCAGACTTCCGGTACTCAGTGCCTGATGCGTGTCTTAAATTCCGTACATGTGTGAGGTAAGCGGCGCGAATGCAAAACAGTATACTAATGAGTTCCTAACAACTGAATAAAAAGAATACGGGGGACCAGAGATAACGGAAAGGACAAACGACAGGGGAGATACCGGAATGAACAGAAATCGGAGGCCGTATTCATGAACATTTACTTTTAGGTAAATAGAACGTGTAAATGATTTACAAAAAGTAAAAAAGAAGGCCCCGCAAAGGCCCGGATTACAAGTATGCGTTTACCTAGGTAAATGTTCATGAATACGGCCTCGGAATAAAAGAGAATGGTCAAGAAAACCTTTGTAAATTTTTTGGATCTAACGATTATGATCCGAATTATTATGTTCGGGCAACAGTATAACCGTTCCACCAAAAAGACTCCGAAACGTCTCCTAAAAAGAAAAAAAGGTGAGCCTTAATTTTCATTGAACTGTTATCAGCTTACTTCATATGAGTACCGGATAGACTAACATTTTTTATTCAACAAAAAGTATACAGGAATATACATATATACAAATATATACAAATAAGAATCCGATCATGATTTCATAACTTCTCTTTGGTCGTCTCCCCCTTTCTTTCATTTTCAATTTCCTGAATCGATCTTTTCGATGGTATCACTGGCAAGTATGTCAACCAATGATACTTTAAGAAGAATCTATTGACACATGAAGGAAGTGCATAGCCATTGTGCTTCACATCAGGAATCATTTCTTTTTCGTCATCCTCGTCAAAATCATTATCATCTCTGAATCCACGTTGTTTTCTAGTGGCTCCTGGAGCAATAT</canonical>
            <polymorphic>AGTGCTCTGATAGCTGGAAATTTCCTCAAAACCTTGTTTGCGTCTTCTGAAGCTATCAACTATCACCAGCTATGACTACCAGTTTTTTTTGAACAAATAAAGTGCAAAGTAGGTTGTTTGGGGTTATCTTATTGTTTAATAAGTAATTGAGTAACTTAAAAACATTCAGACTTCCGGTACTCAGTGCCTGATGCGTGTCTTAAATTCCGTACATGTGTGAGGTAAGCGGCGCGAATGCAAAACAGTATACTAATGAGTTCCTAACAACTGAATAAAAAGAATACGGGGGACCAGAGATAACGGAAAGGACAAACGACAGGGGAGATACCGGAATGAACAGAAATCGGAGGCCGTATTCATGAACATTTACTTTTAGGTAAATAGAACGTGTAAATGATTTACAAAAAGTAAAAAAGAAGGCCCCGCAAAGGCCCGGATTACAAGTATGCGTTTACCTAGGTAAATGTTCATGAATACGGCCTCGGAATAAAAGAGAATGRTCAAGAAAACCTTTGTAAATTTTTTGGATCTAACGATTATGATCCGAATTATTATGTTCGGGCAACAGTATAACCGTTCCACCAAAAAGACTCCGAAACGTCTCCTAAAAAGAAAAAAAGGTGAGCCTTAATTTTCATTGAACTGTTATCAGCTTACTTCATATGAGTACCGGATAGACTAACATTTTTTATTCAACAAAAAGTATACAGGAATATACATATATACAAATATATACAAATAAGAATCCGATCATGATTTCATAACTTCTCTTTGGTCGTCTCCCCCTTTCTTTCATTTTCAATTTCCTGAATCGATCTTTTCGATGGTATCACTGGCAAGTATGTCAACCAATGATACTTTAAGAAGAATCTATTGACACATGAAGGAAGTGCATAGCCATTGTGCTTCACATCAGGAATCATTTCTTTTTCGTCATCCTCGTCAAAATCATTATCATCTCTGAATCCACGTTGTTTTCTAGTGGCTCCTGGAGCAATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTACAAGTATGCGTTTACC</pcr_primer_p1>
		<pcr_primer_p2>AATGTTAGTCTATCCGGTACTCA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGATTACAAGTATGCGTTTACCTAGGTAAATGTTCATGAATACGGCCTCGGAATAAAAGAGAATGGTCAAGAAAACCTTTGTAAATTTTTTGGATCTAACGATTATGATCCGAATTATTATGTTCGGGCAACAGTATAACCGTTCCACCAAAAAGACTCCGAAACGTCTCCTAAAAAGAAAAAAAGGTGAGCCTTAATTTTCATTGAACTGTTATCAGCTTACTTCATATGAGTACCGGATAGACTAACATT</canonical_amplicon>
		<polymorphic_amplicon>GGATTACAAGTATGCGTTTACCTAGGTAAATGTTCATGAATACGGCCTCGGAATAAAAGAGAATGRTCAAGAAAACCTTTGTAAATTTTTTGGATCTAACGATTATGATCCGAATTATTATGTTCGGGCAACAGTATAACCGTTCCACCAAAAAGACTCCGAAACGTCTCCTAAAAAGAAAAAAAGGTGAGCCTTAATTTTCATTGAACTGTTATCAGCTTACTTCATATGAGTACCGGATAGACTAACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7820</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>210451</contig_pos>
        <strand>+</strand>
        <context>ATTTCCGTTT[C/T]AGAGCWGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCTGCAAAAAGAGAAAGACGTCAAAATAGTTTTGATTCAATTTCCGTTT</left_flank>
        <right_flank>AGAGCTGAAATCTGTGCGATGTGTAGTGAAAAAAGTGTGTGGGATCCGAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATTTTTCATTTTTCAAGGTTATCTCTCTAAAAACCTACCTAAAGTTAGTTCTCATTGAAAAAGTGATAAGATCATCACACATTCAATAATCTATCTCTCTGATCTTTTCTCCGTTTTCTGCTTAAACCCGTTCTGGTTTTCCCTCTCTCTCTCTCTCTCCCTCTGTCATTTTCTTTCTATTCTAACACTTATTATTAGTTGTTGTCATCTTTCTCTCTTTCTTTTAATTTTTCCCATTGTTTCTTTTCTATTGATCCTTCTCTTTCTATTGATCCTTCTCTTATCCTAAATATTATCCTGTTGATGTCATAATTAGACAGATCAACTTCTTCTCCCCCTCTTTTTTTAGAGATTAAAAATGCTCCCATCTTTTTTTCTTTTTTTATAAATCTATTTCGGATTTTCGAAATCGAAATGATGTCAGGAGTGCATTCTAATCTACCGTACTCCTGCAAAAAGAGAAAGACGTCAAAATAGTTTTGATTCAATTTCCGTTTTAGAGCTGAAATCTGTGCGATGTGTAGTGAAAAAAGTGTGTGGGATCCGATCAAATTGGTGTGCAATTTTTTGATGGGAGGTTTCGAATTATAGAATCAAGATTTAGGATAAATGTAGTAGATGATCATGAATTAAAGGGTCCAAAAAAATTAGGAGTGACATTTTTGGGGATTATGATGCCAATTATTTTAATGGGTTGCTTTCCGACAAACCTAAAGCATCTGCGGTTCCAGAAAGTTTGCATTTGAGAACAATGAGAAATGTGACGTCAATCTTCGAGAAGCTGGAATCGAAGGCAAAATGTATTTGTACAAATATCACTTAATATGTTCTTTGAAAATCTTTGCAATCAGAAAAAAAATACTAGCTATGGAATATGTCATATCTGTATCTCTGCGATAAGAAAATTACGGTAATTACTATAGTATTACCTCTTTTTCTTGTTACCTCACTATCAGTGAGTTCAGCTTCATGAGACCTGAAATTTTGGAAAACTTTCT</canonical>
            <polymorphic>CTATTTTTCATTTTTCAAGGTTATCTCTCTAAAAACCTACCTAAAGTTAGTTCTCATTGAAAAAGTGATAAGATCATCACACATTCAATAATCTATCTCTCTGATCTTTTCTCCGTTTTCTGCTTAAACCCGTTCTGGTTTTCCCTCTCTCTCTCTCTCTCCCTCTGTCATTTTCTTTCTATTCTAACACTTATTATTAGTTGTTGTCATCTTTCTCTCTTTCTTTTAATTTTTCCCATTGTTTCTTTTCTATTGATCCTTCTCTTTCTATTGATCCTTCTCTTATCCTAAATATTATCCTGTTGATGTCATAATTAGACAGATCAACTTCTTCTCCCCCTCTTTTTTTAGAGATTAAAAATGCTCCCATCTTTTTTTCTTTTTTTATAAATCTATTTCGGATTTTCGAAATCGAAATGATGTCAGGAGTGCATTCTAATCTACCGTACTCCTGCAAAAAGAGAAAGACGTCAAAATAGTTTTGATTCAATTTCCGTTTYAGAGCTGAAATCTGTGCGATGTGTAGTGAAAAAAGTGTGTGGGATCCGATCAAATTGGTGTGCAATTTTTTGATGGGAGGTTTCGAATTATAGAATCAAGATTTAGGATAAATGTAGTAGATGATCATGAATTAAAGGGTCCAAAAAAATTAGGAGTGACATTTTTGGGGATTATGATGCCAATTATTTTAATGGGTTGCTTTCCGACAAACCTAAAGCATCTGCGGTTCCAGAAAGTTTGCATTTGAGAACAATGAGAAATGTGACGTCAATCTTCGAGAAGCTGGAATCGAAGGCAAAATGTATTTGTACAAATATCACTTAATATGTTCTTTGAAAATCTTTGCAATCAGAAAAAAAATACTAGCTATGGAATATGTCATATCTGTATCTCTGCGATAAGAAAATTACGGTAATTACTATAGTATTACCTCTTTTTCTTGTTACCTCACTATCAGTGAGTTCAGCTTCATGAGACCTGAAATTTTGGAAAACTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACTCCTGCAAAAAGAGAAAG</pcr_primer_p1>
		<pcr_primer_p2>CCATTAAAATAATTGGCATCATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTACTCCTGCAAAAAGAGAAAGACGTCAAAATAGTTTTGATTCAATTTCCGTTTTAGAGCTGAAATCTGTGCGATGTGTAGTGAAAAAAGTGTGTGGGATCCGATCAAATTGGTGTGCAATTTTTTGATGGGAGGTTTCGAATTATAGAATCAAGATTTAGGATAAATGTAGTAGATGATCATGAATTAAAGGGTCCAAAAAAATTAGGAGTGACATTTTTGGGGATTATGATGCCAATTATTTTAATGG</canonical_amplicon>
		<polymorphic_amplicon>GTACTCCTGCAAAAAGAGAAAGACGTCAAAATAGTTTTGATTCAATTTCCGTTTYAGAGCTGAAATCTGTGCGATGTGTAGTGAAAAAAGTGTGTGGGATCCGATCAAATTGGTGTGCAATTTTTTGATGGGAGGTTTCGAATTATAGAATCAAGATTTAGGATAAATGTAGTAGATGATCATGAATTAAAGGGTCCAAAAAAATTAGGAGTGACATTTTTGGGGATTATGATGCCAATTATTTTAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7821</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>210457</contig_pos>
        <strand>+</strand>
        <context>GTTTYAGAGC[A/T]GAAATCTGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAAGAGAAAGACGTCAAAATAGTTTTGATTCAATTTCCGTTTTAGAGC</left_flank>
        <right_flank>GAAATCTGTGCGATGTGTAGTGAAAAAAGTGTGTGGGATCCGATCAAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCATTTTTCAAGGTTATCTCTCTAAAAACCTACCTAAAGTTAGTTCTCATTGAAAAAGTGATAAGATCATCACACATTCAATAATCTATCTCTCTGATCTTTTCTCCGTTTTCTGCTTAAACCCGTTCTGGTTTTCCCTCTCTCTCTCTCTCTCCCTCTGTCATTTTCTTTCTATTCTAACACTTATTATTAGTTGTTGTCATCTTTCTCTCTTTCTTTTAATTTTTCCCATTGTTTCTTTTCTATTGATCCTTCTCTTTCTATTGATCCTTCTCTTATCCTAAATATTATCCTGTTGATGTCATAATTAGACAGATCAACTTCTTCTCCCCCTCTTTTTTTAGAGATTAAAAATGCTCCCATCTTTTTTTCTTTTTTTATAAATCTATTTCGGATTTTCGAAATCGAAATGATGTCAGGAGTGCATTCTAATCTACCGTACTCCTGCAAAAAGAGAAAGACGTCAAAATAGTTTTGATTCAATTTCCGTTTTAGAGCTGAAATCTGTGCGATGTGTAGTGAAAAAAGTGTGTGGGATCCGATCAAATTGGTGTGCAATTTTTTGATGGGAGGTTTCGAATTATAGAATCAAGATTTAGGATAAATGTAGTAGATGATCATGAATTAAAGGGTCCAAAAAAATTAGGAGTGACATTTTTGGGGATTATGATGCCAATTATTTTAATGGGTTGCTTTCCGACAAACCTAAAGCATCTGCGGTTCCAGAAAGTTTGCATTTGAGAACAATGAGAAATGTGACGTCAATCTTCGAGAAGCTGGAATCGAAGGCAAAATGTATTTGTACAAATATCACTTAATATGTTCTTTGAAAATCTTTGCAATCAGAAAAAAAATACTAGCTATGGAATATGTCATATCTGTATCTCTGCGATAAGAAAATTACGGTAATTACTATAGTATTACCTCTTTTTCTTGTTACCTCACTATCAGTGAGTTCAGCTTCATGAGACCTGAAATTTTGGAAAACTTTCTGAAACA</canonical>
            <polymorphic>TTCATTTTTCAAGGTTATCTCTCTAAAAACCTACCTAAAGTTAGTTCTCATTGAAAAAGTGATAAGATCATCACACATTCAATAATCTATCTCTCTGATCTTTTCTCCGTTTTCTGCTTAAACCCGTTCTGGTTTTCCCTCTCTCTCTCTCTCTCCCTCTGTCATTTTCTTTCTATTCTAACACTTATTATTAGTTGTTGTCATCTTTCTCTCTTTCTTTTAATTTTTCCCATTGTTTCTTTTCTATTGATCCTTCTCTTTCTATTGATCCTTCTCTTATCCTAAATATTATCCTGTTGATGTCATAATTAGACAGATCAACTTCTTCTCCCCCTCTTTTTTTAGAGATTAAAAATGCTCCCATCTTTTTTTCTTTTTTTATAAATCTATTTCGGATTTTCGAAATCGAAATGATGTCAGGAGTGCATTCTAATCTACCGTACTCCTGCAAAAAGAGAAAGACGTCAAAATAGTTTTGATTCAATTTCCGTTTTAGAGCWGAAATCTGTGCGATGTGTAGTGAAAAAAGTGTGTGGGATCCGATCAAATTGGTGTGCAATTTTTTGATGGGAGGTTTCGAATTATAGAATCAAGATTTAGGATAAATGTAGTAGATGATCATGAATTAAAGGGTCCAAAAAAATTAGGAGTGACATTTTTGGGGATTATGATGCCAATTATTTTAATGGGTTGCTTTCCGACAAACCTAAAGCATCTGCGGTTCCAGAAAGTTTGCATTTGAGAACAATGAGAAATGTGACGTCAATCTTCGAGAAGCTGGAATCGAAGGCAAAATGTATTTGTACAAATATCACTTAATATGTTCTTTGAAAATCTTTGCAATCAGAAAAAAAATACTAGCTATGGAATATGTCATATCTGTATCTCTGCGATAAGAAAATTACGGTAATTACTATAGTATTACCTCTTTTTCTTGTTACCTCACTATCAGTGAGTTCAGCTTCATGAGACCTGAAATTTTGGAAAACTTTCTGAAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>498 279 100 84 39</canonical_bands>
                <polymorphic_bands>777 100 84 39</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>498 279 100 84 39</canonical_bands>
                <polymorphic_bands>777 100 84 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTACTCCTGCAAAAAGAGAAAG</pcr_primer_p1>
		<pcr_primer_p2>CCATTAAAATAATTGGCATCATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTACTCCTGCAAAAAGAGAAAGACGTCAAAATAGTTTTGATTCAATTTCCGTTTTAGAGCTGAAATCTGTGCGATGTGTAGTGAAAAAAGTGTGTGGGATCCGATCAAATTGGTGTGCAATTTTTTGATGGGAGGTTTCGAATTATAGAATCAAGATTTAGGATAAATGTAGTAGATGATCATGAATTAAAGGGTCCAAAAAAATTAGGAGTGACATTTTTGGGGATTATGATGCCAATTATTTTAATGG</canonical_amplicon>
		<polymorphic_amplicon>GTACTCCTGCAAAAAGAGAAAGACGTCAAAATAGTTTTGATTCAATTTCCGTTTTAGAGCWGAAATCTGTGCGATGTGTAGTGAAAAAAGTGTGTGGGATCCGATCAAATTGGTGTGCAATTTTTTGATGGGAGGTTTCGAATTATAGAATCAAGATTTAGGATAAATGTAGTAGATGATCATGAATTAAAGGGTCCAAAAAAATTAGGAGTGACATTTTTGGGGATTATGATGCCAATTATTTTAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7823</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>213505</contig_pos>
        <strand>+</strand>
        <context>CAGTCGCTCA[A/G]CGTAATCTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATGCCTCCAGGTTCTTGATTACGAAATTTTCCAGGTCCCAGTCGCTCA</left_flank>
        <right_flank>CGTAATCTTCAAGCCAAAAAACACGCCGCGGAGAAAAACGGTTTCTTCAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACACTGACCCAAAATTTCGTCTTGATTTGTTTCCAATCTTATTGAGTCTTTAACAGCCCGGCTTCTCAAAGTAGTTCCTACTACTATTCTATAAAAAAAGATTCAAATAACTAAAAAAAAGTAAACAAATTTTTCTCAACTTCCTTTTTTAAAGTTCGTTTTGAGATATTTTTTCAAAGCAAACAAAAATCCGGNNNNNNNNNNNNGTGGGCCATCACTGAAGGTATGTAGTCTGATTCGCAAGTTGAGATGATTTTTGATTTTCAGGAAAAGTCACATCTAAAACTTCCGGGGTCTACGACTCAACATCTGGAAATACTGGATCAGCTGAGGCCTACATGTGCACCCTGGTTGGTGTACCTTATTACGCTGTGGTTGCTGATAACTTGGAAGAGGAGAAGGTCAAGCACATTGAGAGTTTTGGAGGACAAATTATCAAGGTAAGAGATAATGCCTCCAGGTTCTTGATTACGAAATTTTCCAGGTCCCAGTCGCTCAACGTAATCTTCAAGCCAAAAAACACGCCGCGGAGAAAAACGGTTTCTTCATGAATCAATTCGGAAACGCAGAGAAAGCAGAGGAATTCCATGAGAGCGGTGATTTCTACTTTGAGTCCACCAACGTCTACCATGAAATTATTGTTCAATTGAAAAAGGAAAAAGAGCAGGCTGTTAAGATCCCCGACTACTTTGTTCATTCGGCAGGAACGGGTGGTACTATTTCTAGTGTTGGAAGATATATCGCTAGATATGGTGCACCTACCAAGGTCATCCTTTCCGATTCGCAATACTCTCTGTTCTATGACTACGTTATCGGACACAAGTTCACCAACCAATCGGGCGCTGGAATCTGGACACCGCCAGGAATCGCTGGAATCGGTTATGGATATGATATTGAACCAGTGCTCTACGGACAAACGACCAGTTTGACTCGGAATGTGATCCATGAGGCTATGCGAATGCCTGACATTGCTTCGGTTGCAGCGATGAGAATTCTAGA</canonical>
            <polymorphic>GACACTGACCCAAAATTTCGTCTTGATTTGTTTCCAATCTTATTGAGTCTTTAACAGCCCGGCTTCTCAAAGTAGTTCCTACTACTATTCTATAAAAAAAGATTCAAATAACTAAAAAAAAGTAAACAAATTTTTCTCAACTTCCTTTTTTAAAGTTCGTTTTGAGATATTTTTTCAAAGCAAACAAAAATCCGGNNNNNNNNNNNNGTGGGCCATCACTGAAGGTATGTAGTCTGATTCGCAAGTTGAGATGATTTTTGATTTTCAGGAAAAGTCACATCTAAAACTTCCGGGGTCTACGACTCAACATCTGGAAATACTGGATCAGCTGAGGCCTACATGTGCACCCTGGTTGGTGTACCTTATTACGCTGTGGTTGCTGATAACTTGGAAGAGGAGAAGGTCAAGCACATTGAGAGTTTTGGAGGACAAATTATCAAGGTAAGAGATAATGCCTCCAGGTTCTTGATTACGAAATTTTCCAGGTCCCAGTCGCTCARCGTAATCTTCAAGCCAAAAAACACGCCGCGGAGAAAAACGGTTTCTTCATGAATCAATTCGGAAACGCAGAGAAAGCAGAGGAATTCCATGAGAGCGGTGATTTCTACTTTGAGTCCACCAACGTCTACCATGAAATTATTGTTCAATTGAAAAAGGAAAAAGAGCAGGCTGTTAAGATCCCCGACTACTTTGTTCATTCGGCAGGAACGGGTGGTACTATTTCTAGTGTTGGAAGATATATCGCTAGATATGGTGCACCTACCAAGGTCATCCTTTCCGATTCGCAATACTCTCTGTTCTATGACTACGTTATCGGACACAAGTTCACCAACCAATCGGGCGCTGGAATCTGGACACCGCCAGGAATCGCTGGAATCGGTTATGGATATGATATTGAACCAGTGCTCTACGGACAAACGACCAGTTTGACTCGGAATGTGATCCATGAGGCTATGCGAATGCCTGACATTGCTTCGGTTGCAGCGATGAGAATTCTAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>500 192 186 122</canonical_bands>
                <polymorphic_bands>622 192 186</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGATAACTTGGAAGAGGAGAA</pcr_primer_p1>
		<pcr_primer_p2>TTGGTGGACTCAAAGTAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTGATAACTTGGAAGAGGAGAAGGTCAAGCACATTGAGAGTTTTGGAGGACAAATTATCAAGGTAAGAGATAATGCCTCCAGGTTCTTGATTACGAAATTTTCCAGGTCCCAGTCGCTCAACGTAATCTTCAAGCCAAAAAACACGCCGCGGAGAAAAACGGTTTCTTCATGAATCAATTCGGAAACGCAGAGAAAGCAGAGGAATTCCATGAGAGCGGTGATTTCTACTTTGAGTCCACCAA</canonical_amplicon>
		<polymorphic_amplicon>CTGATAACTTGGAAGAGGAGAAGGTCAAGCACATTGAGAGTTTTGGAGGACAAATTATCAAGGTAAGAGATAATGCCTCCAGGTTCTTGATTACGAAATTTTCCAGGTCCCAGTCGCTCARCGTAATCTTCAAGCCAAAAAACACGCCGCGGAGAAAAACGGTTTCTTCATGAATCAATTCGGAAACGCAGAGAAAGCAGAGGAATTCCATGAGAGCGGTGATTTCTACTTTGAGTCCACCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7824</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>213435</contig_pos>
        <strand>+</strand>
        <context>TTTTGGAGGA[A/C]AAATTATCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGATAACTTGGAAGAGGAGAAGGTCAAGCACATTGAGAGTTTTGGAGGA</left_flank>
        <right_flank>AAATTATCAAGGTAAGAGATAATGCCTCCAGGTTCTTGATTACGAAATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATAGGAACCGAGATAATTGAGCTCGTGGACGTATAGGGTGGGCTCCTAGTTGAACAAATACGGTAGTTTGACACTGACCCAAAATTTCGTCTTGATTTGTTTCCAATCTTATTGAGTCTTTAACAGCCCGGCTTCTCAAAGTAGTTCCTACTACTATTCTATAAAAAAAGATTCAAATAACTAAAAAAAAGTAAACAAATTTTTCTCAACTTCCTTTTTTAAAGTTCGTTTTGAGATATTTTTTCAAAGCAAACAAAAATCCGGNNNNNNNNNNNNGTGGGCCATCACTGAAGGTATGTAGTCTGATTCGCAAGTTGAGATGATTTTTGATTTTCAGGAAAAGTCACATCTAAAACTTCCGGGGTCTACGACTCAACATCTGGAAATACTGGATCAGCTGAGGCCTACATGTGCACCCTGGTTGGTGTACCTTATTACGCTGTGGTTGCTGATAACTTGGAAGAGGAGAAGGTCAAGCACATTGAGAGTTTTGGAGGACAAATTATCAAGGTAAGAGATAATGCCTCCAGGTTCTTGATTACGAAATTTTCCAGGTCCCAGTCGCTCAACGTAATCTTCAAGCCAAAAAACACGCCGCGGAGAAAAACGGTTTCTTCATGAATCAATTCGGAAACGCAGAGAAAGCAGAGGAATTCCATGAGAGCGGTGATTTCTACTTTGAGTCCACCAACGTCTACCATGAAATTATTGTTCAATTGAAAAAGGAAAAAGAGCAGGCTGTTAAGATCCCCGACTACTTTGTTCATTCGGCAGGAACGGGTGGTACTATTTCTAGTGTTGGAAGATATATCGCTAGATATGGTGCACCTACCAAGGTCATCCTTTCCGATTCGCAATACTCTCTGTTCTATGACTACGTTATCGGACACAAGTTCACCAACCAATCGGGCGCTGGAATCTGGACACCGCCAGGAATCGCTGGAATCGGTTATGGATATGATATTGAACCAGTGCTCTACGGACAAACGACCAGTTTGA</canonical>
            <polymorphic>CATAGGAACCGAGATAATTGAGCTCGTGGACGTATAGGGTGGGCTCCTAGTTGAACAAATACGGTAGTTTGACACTGACCCAAAATTTCGTCTTGATTTGTTTCCAATCTTATTGAGTCTTTAACAGCCCGGCTTCTCAAAGTAGTTCCTACTACTATTCTATAAAAAAAGATTCAAATAACTAAAAAAAAGTAAACAAATTTTTCTCAACTTCCTTTTTTAAAGTTCGTTTTGAGATATTTTTTCAAAGCAAACAAAAATCCGGNNNNNNNNNNNNGTGGGCCATCACTGAAGGTATGTAGTCTGATTCGCAAGTTGAGATGATTTTTGATTTTCAGGAAAAGTCACATCTAAAACTTCCGGGGTCTACGACTCAACATCTGGAAATACTGGATCAGCTGAGGCCTACATGTGCACCCTGGTTGGTGTACCTTATTACGCTGTGGTTGCTGATAACTTGGAAGAGGAGAAGGTCAAGCACATTGAGAGTTTTGGAGGAMAAATTATCAAGGTAAGAGATAATGCCTCCAGGTTCTTGATTACGAAATTTTCCAGGTCCCAGTCGCTCAACGTAATCTTCAAGCCAAAAAACACGCCGCGGAGAAAAACGGTTTCTTCATGAATCAATTCGGAAACGCAGAGAAAGCAGAGGAATTCCATGAGAGCGGTGATTTCTACTTTGAGTCCACCAACGTCTACCATGAAATTATTGTTCAATTGAAAAAGGAAAAAGAGCAGGCTGTTAAGATCCCCGACTACTTTGTTCATTCGGCAGGAACGGGTGGTACTATTTCTAGTGTTGGAAGATATATCGCTAGATATGGTGCACCTACCAAGGTCATCCTTTCCGATTCGCAATACTCTCTGTTCTATGACTACGTTATCGGACACAAGTTCACCAACCAATCGGGCGCTGGAATCTGGACACCGCCAGGAATCGCTGGAATCGGTTATGGATATGATATTGAACCAGTGCTCTACGGACAAACGACCAGTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTGATAACTTGGAAGAGGAG</pcr_primer_p1>
		<pcr_primer_p2>TTGGTGGACTCAAAGTAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GCTGATAACTTGGAAGAGGAGAAGGTCAAGCACATTGAGAGTTTTGGAGGACAAATTATCAAGGTAAGAGATAATGCCTCCAGGTTCTTGATTACGAAATTTTCCAGGTCCCAGTCGCTCAACGTAATCTTCAAGCCAAAAAACACGCCGCGGAGAAAAACGGTTTCTTCATGAATCAATTCGGAAACGCAGAGAAAGCAGAGGAATTCCATGAGAGCGGTGATTTCTACTTTGAGTCCACCAA</canonical_amplicon>
		<polymorphic_amplicon>GCTGATAACTTGGAAGAGGAGAAGGTCAAGCACATTGAGAGTTTTGGAGGAMAAATTATCAAGGTAAGAGATAATGCCTCCAGGTTCTTGATTACGAAATTTTCCAGGTCCCAGTCGCTCAACGTAATCTTCAAGCCAAAAAACACGCCGCGGAGAAAAACGGTTTCTTCATGAATCAATTCGGAAACGCAGAGAAAGCAGAGGAATTCCATGAGAGCGGTGATTTCTACTTTGAGTCCACCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7825</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>213416</contig_pos>
        <strand>+</strand>
        <context>AGGTCAAGCA[C/G]ATTGAGAGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCTTATTACGCTGTGGTTGCTGATAACTTGGAAGAGGAGAAGGTCAAGCA</left_flank>
        <right_flank>ATTGAGAGTTTTGGAGGACAAATTATCAAGGTAAGAGATAATGCCTCCAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGATATTTGATATCTCTCATAGGAACCGAGATAATTGAGCTCGTGGACGTATAGGGTGGGCTCCTAGTTGAACAAATACGGTAGTTTGACACTGACCCAAAATTTCGTCTTGATTTGTTTCCAATCTTATTGAGTCTTTAACAGCCCGGCTTCTCAAAGTAGTTCCTACTACTATTCTATAAAAAAAGATTCAAATAACTAAAAAAAAGTAAACAAATTTTTCTCAACTTCCTTTTTTAAAGTTCGTTTTGAGATATTTTTTCAAAGCAAACAAAAATCCGGNNNNNNNNNNNNGTGGGCCATCACTGAAGGTATGTAGTCTGATTCGCAAGTTGAGATGATTTTTGATTTTCAGGAAAAGTCACATCTAAAACTTCCGGGGTCTACGACTCAACATCTGGAAATACTGGATCAGCTGAGGCCTACATGTGCACCCTGGTTGGTGTACCTTATTACGCTGTGGTTGCTGATAACTTGGAAGAGGAGAAGGTCAAGCACATTGAGAGTTTTGGAGGACAAATTATCAAGGTAAGAGATAATGCCTCCAGGTTCTTGATTACGAAATTTTCCAGGTCCCAGTCGCTCAACGTAATCTTCAAGCCAAAAAACACGCCGCGGAGAAAAACGGTTTCTTCATGAATCAATTCGGAAACGCAGAGAAAGCAGAGGAATTCCATGAGAGCGGTGATTTCTACTTTGAGTCCACCAACGTCTACCATGAAATTATTGTTCAATTGAAAAAGGAAAAAGAGCAGGCTGTTAAGATCCCCGACTACTTTGTTCATTCGGCAGGAACGGGTGGTACTATTTCTAGTGTTGGAAGATATATCGCTAGATATGGTGCACCTACCAAGGTCATCCTTTCCGATTCGCAATACTCTCTGTTCTATGACTACGTTATCGGACACAAGTTCACCAACCAATCGGGCGCTGGAATCTGGACACCGCCAGGAATCGCTGGAATCGGTTATGGATATGATATTGAACCAGTGCTCTAC</canonical>
            <polymorphic>ACAGATATTTGATATCTCTCATAGGAACCGAGATAATTGAGCTCGTGGACGTATAGGGTGGGCTCCTAGTTGAACAAATACGGTAGTTTGACACTGACCCAAAATTTCGTCTTGATTTGTTTCCAATCTTATTGAGTCTTTAACAGCCCGGCTTCTCAAAGTAGTTCCTACTACTATTCTATAAAAAAAGATTCAAATAACTAAAAAAAAGTAAACAAATTTTTCTCAACTTCCTTTTTTAAAGTTCGTTTTGAGATATTTTTTCAAAGCAAACAAAAATCCGGNNNNNNNNNNNNGTGGGCCATCACTGAAGGTATGTAGTCTGATTCGCAAGTTGAGATGATTTTTGATTTTCAGGAAAAGTCACATCTAAAACTTCCGGGGTCTACGACTCAACATCTGGAAATACTGGATCAGCTGAGGCCTACATGTGCACCCTGGTTGGTGTACCTTATTACGCTGTGGTTGCTGATAACTTGGAAGAGGAGAAGGTCAAGCASATTGAGAGTTTTGGAGGACAAATTATCAAGGTAAGAGATAATGCCTCCAGGTTCTTGATTACGAAATTTTCCAGGTCCCAGTCGCTCAACGTAATCTTCAAGCCAAAAAACACGCCGCGGAGAAAAACGGTTTCTTCATGAATCAATTCGGAAACGCAGAGAAAGCAGAGGAATTCCATGAGAGCGGTGATTTCTACTTTGAGTCCACCAACGTCTACCATGAAATTATTGTTCAATTGAAAAAGGAAAAAGAGCAGGCTGTTAAGATCCCCGACTACTTTGTTCATTCGGCAGGAACGGGTGGTACTATTTCTAGTGTTGGAAGATATATCGCTAGATATGGTGCACCTACCAAGGTCATCCTTTCCGATTCGCAATACTCTCTGTTCTATGACTACGTTATCGGACACAAGTTCACCAACCAATCGGGCGCTGGAATCTGGACACCGCCAGGAATCGCTGGAATCGGTTATGGATATGATATTGAACCAGTGCTCTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>206 113 96 77 67 62 59 48 47 35 33 29 27 18 17 15 13 12 8 8 6 2 2</canonical_bands>
                <polymorphic_bands>206 148 96 77 67 62 59 48 47 33 29 27 18 17 15 13 12 8 8 6 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATCACTGAAGGTATGTAGTCT</pcr_primer_p1>
		<pcr_primer_p2>ACCTGGAGGCATTATCTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCATCACTGAAGGTATGTAGTCTGATTCGCAAGTTGAGATGATTTTTGATTTTCAGGAAAAGTCACATCTAAAACTTCCGGGGTCTACGACTCAACATCTGGAAATACTGGATCAGCTGAGGCCTACATGTGCACCCTGGTTGGTGTACCTTATTACGCTGTGGTTGCTGATAACTTGGAAGAGGAGAAGGTCAAGCACATTGAGAGTTTTGGAGGACAAATTATCAAGGTAAGAGATAATGCCTCCAGGT</canonical_amplicon>
		<polymorphic_amplicon>CCATCACTGAAGGTATGTAGTCTGATTCGCAAGTTGAGATGATTTTTGATTTTCAGGAAAAGTCACATCTAAAACTTCCGGGGTCTACGACTCAACATCTGGAAATACTGGATCAGCTGAGGCCTACATGTGCACCCTGGTTGGTGTACCTTATTACGCTGTGGTTGCTGATAACTTGGAAGAGGAGAAGGTCAAGCASATTGAGAGTTTTGGAGGACAAATTATCAAGGTAAGAGATAATGCCTCCAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7826</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>230009</contig_pos>
        <strand>+</strand>
        <context>AATCTACAAA[A/T]ARAGTGGACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAGATTTTAAGTGGTATTTCGAAGAAATGACGTTAAGTGAATCTACAAA</left_flank>
        <right_flank>AAAGTGGACATCCGGACAAACAGAAACTGTTGATGTCCAAAATCTAGGGA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTAAGAATGTCTTGCTTTATAAAAAACAAGACTACATGGCGTCACTGAAAATGGGGGAGGTGCTAATTTCCAATTTCCATAAGCCCTTGTCTCCGCTTTTCGGCTAAAAATACTTGAAAAATTGACGAAAGTGTGAAAAACGAGTAATCATGGATCATATTTAGAAGGGGACATGCTAATTGGATGCTCTTTTTGTCATCCCATTCAGAAGAAAAAGAAAATCTGTCCCATTTTAGGGGGAGAAAGAGGGCTAATTGTGGTCGGGTGTACTACTAGAGTGACTTTTTGAACCGAATGAGAAAGAGGCGGAGTTTGAAGACGTGTCGAATGGAAGAAAATAGGAGGAGGGAGATAAAAGTAATTGGGTCGTTATGGAGAAGTACAGAGAATTTTTTGTGCGGTGGTGGAGAAAATGGATTTTGCAGAATAGGAAAAAGATTGAAAGCTATAAGATTTTAAGTGGTATTTCGAAGAAATGACGTTAAGTGAATCTACAAAAAAAGTGGACATCCGGACAAACAGAAACTGTTGATGTCCAAAATCTAGGGAGATTTGATAAGTAAGAAATTGAGCAAGGCGCATAGCAAGCCGCATAAAAATTCATTTATCTTACTGACAAGAAAACTCAAAAAATTATCTTTTGAACGCAAAAACAATCTAATTCCTAGGACTATTTTGAGTCGAGTTACTGAAGTTATAGAGCGAGAGACGCAGTGTGTCTCGTTTCTCTGCGTATCTCACCTCAAAACTTTAAATGACTGTAACTCGGCTCAAAATCATGCTCCTAGCTCAATTTTGAACGGGTTTGGCATAAATTTTTTTTTCTACTTTTTGTTGATATTTTAAAAAAATAAACAACTTTTAAAACCAATTTTCGATTTTTTGCGGGCTGATGTGGGATTCCTTGATTTCTTTCGAACTTTAATCTCCTCCCTCTTTTTTGCCTAATTTGAATACCTAAACATACAGGAAACAGATGTCCTTCACTGAAACTAATTC</canonical>
            <polymorphic>CCTAAGAATGTCTTGCTTTATAAAAAACAAGACTACATGGCGTCACTGAAAATGGGGGAGGTGCTAATTTCCAATTTCCATAAGCCCTTGTCTCCGCTTTTCGGCTAAAAATACTTGAAAAATTGACGAAAGTGTGAAAAACGAGTAATCATGGATCATATTTAGAAGGGGACATGCTAATTGGATGCTCTTTTTGTCATCCCATTCAGAAGAAAAAGAAAATCTGTCCCATTTTAGGGGGAGAAAGAGGGCTAATTGTGGTCGGGTGTACTACTAGAGTGACTTTTTGAACCGAATGAGAAAGAGGCGGAGTTTGAAGACGTGTCGAATGGAAGAAAATAGGAGGAGGGAGATAAAAGTAATTGGGTCGTTATGGAGAAGTACAGAGAATTTTTTGTGCGGTGGTGGAGAAAATGGATTTTGCAGAATAGGAAAAAGATTGAAAGCTATAAGATTTTAAGTGGTATTTCGAAGAAATGACGTTAAGTGAATCTACAAAWAAAGTGGACATCCGGACAAACAGAAACTGTTGATGTCCAAAATCTAGGGAGATTTGATAAGTAAGAAATTGAGCAAGGCGCATAGCAAGCCGCATAAAAATTCATTTATCTTACTGACAAGAAAACTCAAAAAATTATCTTTTGAACGCAAAAACAATCTAATTCCTAGGACTATTTTGAGTCGAGTTACTGAAGTTATAGAGCGAGAGACGCAGTGTGTCTCGTTTCTCTGCGTATCTCACCTCAAAACTTTAAATGACTGTAACTCGGCTCAAAATCATGCTCCTAGCTCAATTTTGAACGGGTTTGGCATAAATTTTTTTTTCTACTTTTTGTTGATATTTTAAAAAAATAAACAACTTTTAAAACCAATTTTCGATTTTTTGCGGGCTGATGTGGGATTCCTTGATTTCTTTCGAACTTTAATCTCCTCCCTCTTTTTTGCCTAATTTGAATACCTAAACATACAGGAAACAGATGTCCTTCACTGAAACTAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAATAGGAGGAGGGAGATA</pcr_primer_p1>
		<pcr_primer_p2>GCCTTGCTCAATTTCTTACTTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAAAATAGGAGGAGGGAGATAAAAGTAATTGGGTCGTTATGGAGAAGTACAGAGAATTTTTTGTGCGGTGGTGGAGAAAATGGATTTTGCAGAATAGGAAAAAGATTGAAAGCTATAAGATTTTAAGTGGTATTTCGAAGAAATGACGTTAAGTGAATCTACAAAAAAAGTGGACATCCGGACAAACAGAAACTGTTGATGTCCAAAATCTAGGGAGATTTGATAAGTAAGAAATTGAGCAAGGC</canonical_amplicon>
		<polymorphic_amplicon>AGAAAATAGGAGGAGGGAGATAAAAGTAATTGGGTCGTTATGGAGAAGTACAGAGAATTTTTTGTGCGGTGGTGGAGAAAATGGATTTTGCAGAATAGGAAAAAGATTGAAAGCTATAAGATTTTAAGTGGTATTTCGAAGAAATGACGTTAAGTGAATCTACAAAWAAAGTGGACATCCGGACAAACAGAAACTGTTGATGTCCAAAATCTAGGGAGATTTGATAAGTAAGAAATTGAGCAAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7827</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>230011</contig_pos>
        <strand>+</strand>
        <context>TCTACAAAWA[A/G]AGTGGACATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGATTTTAAGTGGTATTTCGAAGAAATGACGTTAAGTGAATCTACAAAAA</left_flank>
        <right_flank>AGTGGACATCCGGACAAACAGAAACTGTTGATGTCCAAAATCTAGGGAGA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGAATGTCTTGCTTTATAAAAAACAAGACTACATGGCGTCACTGAAAATGGGGGAGGTGCTAATTTCCAATTTCCATAAGCCCTTGTCTCCGCTTTTCGGCTAAAAATACTTGAAAAATTGACGAAAGTGTGAAAAACGAGTAATCATGGATCATATTTAGAAGGGGACATGCTAATTGGATGCTCTTTTTGTCATCCCATTCAGAAGAAAAAGAAAATCTGTCCCATTTTAGGGGGAGAAAGAGGGCTAATTGTGGTCGGGTGTACTACTAGAGTGACTTTTTGAACCGAATGAGAAAGAGGCGGAGTTTGAAGACGTGTCGAATGGAAGAAAATAGGAGGAGGGAGATAAAAGTAATTGGGTCGTTATGGAGAAGTACAGAGAATTTTTTGTGCGGTGGTGGAGAAAATGGATTTTGCAGAATAGGAAAAAGATTGAAAGCTATAAGATTTTAAGTGGTATTTCGAAGAAATGACGTTAAGTGAATCTACAAAAAAAGTGGACATCCGGACAAACAGAAACTGTTGATGTCCAAAATCTAGGGAGATTTGATAAGTAAGAAATTGAGCAAGGCGCATAGCAAGCCGCATAAAAATTCATTTATCTTACTGACAAGAAAACTCAAAAAATTATCTTTTGAACGCAAAAACAATCTAATTCCTAGGACTATTTTGAGTCGAGTTACTGAAGTTATAGAGCGAGAGACGCAGTGTGTCTCGTTTCTCTGCGTATCTCACCTCAAAACTTTAAATGACTGTAACTCGGCTCAAAATCATGCTCCTAGCTCAATTTTGAACGGGTTTGGCATAAATTTTTTTTTCTACTTTTTGTTGATATTTTAAAAAAATAAACAACTTTTAAAACCAATTTTCGATTTTTTGCGGGCTGATGTGGGATTCCTTGATTTCTTTCGAACTTTAATCTCCTCCCTCTTTTTTGCCTAATTTGAATACCTAAACATACAGGAAACAGATGTCCTTCACTGAAACTAATTCTT</canonical>
            <polymorphic>TAAGAATGTCTTGCTTTATAAAAAACAAGACTACATGGCGTCACTGAAAATGGGGGAGGTGCTAATTTCCAATTTCCATAAGCCCTTGTCTCCGCTTTTCGGCTAAAAATACTTGAAAAATTGACGAAAGTGTGAAAAACGAGTAATCATGGATCATATTTAGAAGGGGACATGCTAATTGGATGCTCTTTTTGTCATCCCATTCAGAAGAAAAAGAAAATCTGTCCCATTTTAGGGGGAGAAAGAGGGCTAATTGTGGTCGGGTGTACTACTAGAGTGACTTTTTGAACCGAATGAGAAAGAGGCGGAGTTTGAAGACGTGTCGAATGGAAGAAAATAGGAGGAGGGAGATAAAAGTAATTGGGTCGTTATGGAGAAGTACAGAGAATTTTTTGTGCGGTGGTGGAGAAAATGGATTTTGCAGAATAGGAAAAAGATTGAAAGCTATAAGATTTTAAGTGGTATTTCGAAGAAATGACGTTAAGTGAATCTACAAAAARAGTGGACATCCGGACAAACAGAAACTGTTGATGTCCAAAATCTAGGGAGATTTGATAAGTAAGAAATTGAGCAAGGCGCATAGCAAGCCGCATAAAAATTCATTTATCTTACTGACAAGAAAACTCAAAAAATTATCTTTTGAACGCAAAAACAATCTAATTCCTAGGACTATTTTGAGTCGAGTTACTGAAGTTATAGAGCGAGAGACGCAGTGTGTCTCGTTTCTCTGCGTATCTCACCTCAAAACTTTAAATGACTGTAACTCGGCTCAAAATCATGCTCCTAGCTCAATTTTGAACGGGTTTGGCATAAATTTTTTTTTCTACTTTTTGTTGATATTTTAAAAAAATAAACAACTTTTAAAACCAATTTTCGATTTTTTGCGGGCTGATGTGGGATTCCTTGATTTCTTTCGAACTTTAATCTCCTCCCTCTTTTTTGCCTAATTTGAATACCTAAACATACAGGAAACAGATGTCCTTCACTGAAACTAATTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAATAGGAGGAGGGAGATA</pcr_primer_p1>
		<pcr_primer_p2>GCCTTGCTCAATTTCTTACTTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAAAATAGGAGGAGGGAGATAAAAGTAATTGGGTCGTTATGGAGAAGTACAGAGAATTTTTTGTGCGGTGGTGGAGAAAATGGATTTTGCAGAATAGGAAAAAGATTGAAAGCTATAAGATTTTAAGTGGTATTTCGAAGAAATGACGTTAAGTGAATCTACAAAAAAAGTGGACATCCGGACAAACAGAAACTGTTGATGTCCAAAATCTAGGGAGATTTGATAAGTAAGAAATTGAGCAAGGC</canonical_amplicon>
		<polymorphic_amplicon>AGAAAATAGGAGGAGGGAGATAAAAGTAATTGGGTCGTTATGGAGAAGTACAGAGAATTTTTTGTGCGGTGGTGGAGAAAATGGATTTTGCAGAATAGGAAAAAGATTGAAAGCTATAAGATTTTAAGTGGTATTTCGAAGAAATGACGTTAAGTGAATCTACAAAAARAGTGGACATCCGGACAAACAGAAACTGTTGATGTCCAAAATCTAGGGAGATTTGATAAGTAAGAAATTGAGCAAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7828</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>230056</contig_pos>
        <strand>+</strand>
        <context>CCAAAATCTA[A/G]GGAGATTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAAAGTGGACATCCGGACAAACAGAAACTGTTGATGTCCAAAATCTA</left_flank>
        <right_flank>GGAGATTTGATAAGTAAGAAATTGAGCAAGGCGCATAGCAAGCCGCATAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAATGGGGGAGGTGCTAATTTCCAATTTCCATAAGCCCTTGTCTCCGCTTTTCGGCTAAAAATACTTGAAAAATTGACGAAAGTGTGAAAAACGAGTAATCATGGATCATATTTAGAAGGGGACATGCTAATTGGATGCTCTTTTTGTCATCCCATTCAGAAGAAAAAGAAAATCTGTCCCATTTTAGGGGGAGAAAGAGGGCTAATTGTGGTCGGGTGTACTACTAGAGTGACTTTTTGAACCGAATGAGAAAGAGGCGGAGTTTGAAGACGTGTCGAATGGAAGAAAATAGGAGGAGGGAGATAAAAGTAATTGGGTCGTTATGGAGAAGTACAGAGAATTTTTTGTGCGGTGGTGGAGAAAATGGATTTTGCAGAATAGGAAAAAGATTGAAAGCTATAAGATTTTAAGTGGTATTTCGAAGAAATGACGTTAAGTGAATCTACAAAAAAAGTGGACATCCGGACAAACAGAAACTGTTGATGTCCAAAATCTAGGGAGATTTGATAAGTAAGAAATTGAGCAAGGCGCATAGCAAGCCGCATAAAAATTCATTTATCTTACTGACAAGAAAACTCAAAAAATTATCTTTTGAACGCAAAAACAATCTAATTCCTAGGACTATTTTGAGTCGAGTTACTGAAGTTATAGAGCGAGAGACGCAGTGTGTCTCGTTTCTCTGCGTATCTCACCTCAAAACTTTAAATGACTGTAACTCGGCTCAAAATCATGCTCCTAGCTCAATTTTGAACGGGTTTGGCATAAATTTTTTTTTCTACTTTTTGTTGATATTTTAAAAAAATAAACAACTTTTAAAACCAATTTTCGATTTTTTGCGGGCTGATGTGGGATTCCTTGATTTCTTTCGAACTTTAATCTCCTCCCTCTTTTTTGCCTAATTTGAATACCTAAACATACAGGAAACAGATGTCCTTCACTGAAACTAATTCTTTGCAGAGCACAAAAAAAACACAGAATAAAGAAACGGACGCGGGGC</canonical>
            <polymorphic>GAAAATGGGGGAGGTGCTAATTTCCAATTTCCATAAGCCCTTGTCTCCGCTTTTCGGCTAAAAATACTTGAAAAATTGACGAAAGTGTGAAAAACGAGTAATCATGGATCATATTTAGAAGGGGACATGCTAATTGGATGCTCTTTTTGTCATCCCATTCAGAAGAAAAAGAAAATCTGTCCCATTTTAGGGGGAGAAAGAGGGCTAATTGTGGTCGGGTGTACTACTAGAGTGACTTTTTGAACCGAATGAGAAAGAGGCGGAGTTTGAAGACGTGTCGAATGGAAGAAAATAGGAGGAGGGAGATAAAAGTAATTGGGTCGTTATGGAGAAGTACAGAGAATTTTTTGTGCGGTGGTGGAGAAAATGGATTTTGCAGAATAGGAAAAAGATTGAAAGCTATAAGATTTTAAGTGGTATTTCGAAGAAATGACGTTAAGTGAATCTACAAAAAAAGTGGACATCCGGACAAACAGAAACTGTTGATGTCCAAAATCTARGGAGATTTGATAAGTAAGAAATTGAGCAAGGCGCATAGCAAGCCGCATAAAAATTCATTTATCTTACTGACAAGAAAACTCAAAAAATTATCTTTTGAACGCAAAAACAATCTAATTCCTAGGACTATTTTGAGTCGAGTTACTGAAGTTATAGAGCGAGAGACGCAGTGTGTCTCGTTTCTCTGCGTATCTCACCTCAAAACTTTAAATGACTGTAACTCGGCTCAAAATCATGCTCCTAGCTCAATTTTGAACGGGTTTGGCATAAATTTTTTTTTCTACTTTTTGTTGATATTTTAAAAAAATAAACAACTTTTAAAACCAATTTTCGATTTTTTGCGGGCTGATGTGGGATTCCTTGATTTCTTTCGAACTTTAATCTCCTCCCTCTTTTTTGCCTAATTTGAATACCTAAACATACAGGAAACAGATGTCCTTCACTGAAACTAATTCTTTGCAGAGCACAAAAAAAACACAGAATAAAGAAACGGACGCGGGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>270 261 227 122 120</canonical_bands>
                <polymorphic_bands>392 261 227 120</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCGTTATGGAGAAGTACAGAGA</pcr_primer_p1>
		<pcr_primer_p2>TCAGTAAGATAAATGAATTTTTATGC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTCGTTATGGAGAAGTACAGAGAATTTTTTGTGCGGTGGTGGAGAAAATGGATTTTGCAGAATAGGAAAAAGATTGAAAGCTATAAGATTTTAAGTGGTATTTCGAAGAAATGACGTTAAGTGAATCTACAAAAAAAGTGGACATCCGGACAAACAGAAACTGTTGATGTCCAAAATCTAGGGAGATTTGATAAGTAAGAAATTGAGCAAGGCGCATAGCAAGCCGCATAAAAATTCATTTATCTTACTGA</canonical_amplicon>
		<polymorphic_amplicon>GTCGTTATGGAGAAGTACAGAGAATTTTTTGTGCGGTGGTGGAGAAAATGGATTTTGCAGAATAGGAAAAAGATTGAAAGCTATAAGATTTTAAGTGGTATTTCGAAGAAATGACGTTAAGTGAATCTACAAAAAAAGTGGACATCCGGACAAACAGAAACTGTTGATGTCCAAAATCTARGGAGATTTGATAAGTAAGAAATTGAGCAAGGCGCATAGCAAGCCGCATAAAAATTCATTTATCTTACTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7829</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>230355</contig_pos>
        <strand>+</strand>
        <context>TTGATATTTT[A/T]AAAAAATAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGAACGGGTTTGGCATAAATTTTTTTTTCTACTTTTTGTTGATATTTT</left_flank>
        <right_flank>AAAAAATAAACAACTTTTAAAACCAATTTTCGATTTTTTGCGGGCTGATG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGGAGATAAAAGTAATTGGGTCGTTATGGAGAAGTACAGAGAATTTTTTGTGCGGTGGTGGAGAAAATGGATTTTGCAGAATAGGAAAAAGATTGAAAGCTATAAGATTTTAAGTGGTATTTCGAAGAAATGACGTTAAGTGAATCTACAAAAAAAGTGGACATCCGGACAAACAGAAACTGTTGATGTCCAAAATCTAGGGAGATTTGATAAGTAAGAAATTGAGCAAGGCGCATAGCAAGCCGCATAAAAATTCATTTATCTTACTGACAAGAAAACTCAAAAAATTATCTTTTGAACGCAAAAACAATCTAATTCCTAGGACTATTTTGAGTCGAGTTACTGAAGTTATAGAGCGAGAGACGCAGTGTGTCTCGTTTCTCTGCGTATCTCACCTCAAAACTTTAAATGACTGTAACTCGGCTCAAAATCATGCTCCTAGCTCAATTTTGAACGGGTTTGGCATAAATTTTTTTTTCTACTTTTTGTTGATATTTTAAAAAAATAAACAACTTTTAAAACCAATTTTCGATTTTTTGCGGGCTGATGTGGGATTCCTTGATTTCTTTCGAACTTTAATCTCCTCCCTCTTTTTTGCCTAATTTGAATACCTAAACATACAGGAAACAGATGTCCTTCACTGAAACTAATTCTTTGCAGAGCACAAAAAAAACACAGAATAAAGAAACGGACGCGGGGCACAAATAGTGCATAATTGATGGGAGAAAATGTAGGGACGGACACTGGATAAAAAAGTGGATTACAATGGTATATCATTAGTAACGTTTTGAATCTGAAATTCCAAAAAAAAGAAGGTTGGATAAGATCTGGATGATCCTATTTACTTGAGCTAAAAAAAATAGGGGAAATTCGTCATTTAAAGGAGTATTCTGGGAAAAAGATAGGATCAAGAGGAACCTGATTTTTTGATCTGAAAAATAATCTGAAAATATTTCAAACGACAACACAATTTATAAAGATACTGTCATTTGGTTTTCG</canonical>
            <polymorphic>AGGGAGATAAAAGTAATTGGGTCGTTATGGAGAAGTACAGAGAATTTTTTGTGCGGTGGTGGAGAAAATGGATTTTGCAGAATAGGAAAAAGATTGAAAGCTATAAGATTTTAAGTGGTATTTCGAAGAAATGACGTTAAGTGAATCTACAAAAAAAGTGGACATCCGGACAAACAGAAACTGTTGATGTCCAAAATCTAGGGAGATTTGATAAGTAAGAAATTGAGCAAGGCGCATAGCAAGCCGCATAAAAATTCATTTATCTTACTGACAAGAAAACTCAAAAAATTATCTTTTGAACGCAAAAACAATCTAATTCCTAGGACTATTTTGAGTCGAGTTACTGAAGTTATAGAGCGAGAGACGCAGTGTGTCTCGTTTCTCTGCGTATCTCACCTCAAAACTTTAAATGACTGTAACTCGGCTCAAAATCATGCTCCTAGCTCAATTTTGAACGGGTTTGGCATAAATTTTTTTTTCTACTTTTTGTTGATATTTTWAAAAAATAAACAACTTTTAAAACCAATTTTCGATTTTTTGCGGGCTGATGTGGGATTCCTTGATTTCTTTCGAACTTTAATCTCCTCCCTCTTTTTTGCCTAATTTGAATACCTAAACATACAGGAAACAGATGTCCTTCACTGAAACTAATTCTTTGCAGAGCACAAAAAAAACACAGAATAAAGAAACGGACGCGGGGCACAAATAGTGCATAATTGATGGGAGAAAATGTAGGGACGGACACTGGATAAAAAAGTGGATTACAATGGTATATCATTAGTAACGTTTTGAATCTGAAATTCCAAAAAAAAGAAGGTTGGATAAGATCTGGATGATCCTATTTACTTGAGCTAAAAAAAATAGGGGAAATTCGTCATTTAAAGGAGTATTCTGGGAAAAAGATAGGATCAAGAGGAACCTGATTTTTTGATCTGAAAAATAATCTGAAAATATTTCAAACGACAACACAATTTATAAAGATACTGTCATTTGGTTTTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>407 362 120 92 19</canonical_bands>
                <polymorphic_bands>407 362 120 111</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>302 269 121 111 92 60 26 19</canonical_bands>
                <polymorphic_bands>302 269 121 111 111 60 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTACTGACAAGAAAACTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAATCAAGGAATCCCACATC</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>CTTACTGACAAGAAAACTCAAAAAATTATCTTTTGAACGCAAAAACAATCTAATTCCTAGGACTATTTTGAGTCGAGTTACTGAAGTTATAGAGCGAGAGACGCAGTGTGTCTCGTTTCTCTGCGTATCTCACCTCAAAACTTTAAATGACTGTAACTCGGCTCAAAATCATGCTCCTAGCTCAATTTTGAACGGGTTTGGCATAAATTTTTTTTTCTACTTTTTGTTGATATTTTAAAAAAATAAACAACTTTTAAAACCAATTTTCGATTTTTTGCGGGCTGATGTGGGATTCCTTGATTT</canonical_amplicon>
		<polymorphic_amplicon>CTTACTGACAAGAAAACTCAAAAAATTATCTTTTGAACGCAAAAACAATCTAATTCCTAGGACTATTTTGAGTCGAGTTACTGAAGTTATAGAGCGAGAGACGCAGTGTGTCTCGTTTCTCTGCGTATCTCACCTCAAAACTTTAAATGACTGTAACTCGGCTCAAAATCATGCTCCTAGCTCAATTTTGAACGGGTTTGGCATAAATTTTTTTTTCTACTTTTTGTTGATATTTTWAAAAAATAAACAACTTTTAAAACCAATTTTCGATTTTTTGCGGGCTGATGTGGGATTCCTTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7830</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>230394</contig_pos>
        <strand>+</strand>
        <context>TTCGATTTTT[A/T]GCGGGCTGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTGATATTTTAAAAAAATAAACAACTTTTAAAACCAATTTTCGATTTTT</left_flank>
        <right_flank>GCGGGCTGATGTGGGATTCCTTGATTTCTTTCGAACTTTAATCTCCTCCC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAATTTTTTGTGCGGTGGTGGAGAAAATGGATTTTGCAGAATAGGAAAAAGATTGAAAGCTATAAGATTTTAAGTGGTATTTCGAAGAAATGACGTTAAGTGAATCTACAAAAAAAGTGGACATCCGGACAAACAGAAACTGTTGATGTCCAAAATCTAGGGAGATTTGATAAGTAAGAAATTGAGCAAGGCGCATAGCAAGCCGCATAAAAATTCATTTATCTTACTGACAAGAAAACTCAAAAAATTATCTTTTGAACGCAAAAACAATCTAATTCCTAGGACTATTTTGAGTCGAGTTACTGAAGTTATAGAGCGAGAGACGCAGTGTGTCTCGTTTCTCTGCGTATCTCACCTCAAAACTTTAAATGACTGTAACTCGGCTCAAAATCATGCTCCTAGCTCAATTTTGAACGGGTTTGGCATAAATTTTTTTTTCTACTTTTTGTTGATATTTTAAAAAAATAAACAACTTTTAAAACCAATTTTCGATTTTTTGCGGGCTGATGTGGGATTCCTTGATTTCTTTCGAACTTTAATCTCCTCCCTCTTTTTTGCCTAATTTGAATACCTAAACATACAGGAAACAGATGTCCTTCACTGAAACTAATTCTTTGCAGAGCACAAAAAAAACACAGAATAAAGAAACGGACGCGGGGCACAAATAGTGCATAATTGATGGGAGAAAATGTAGGGACGGACACTGGATAAAAAAGTGGATTACAATGGTATATCATTAGTAACGTTTTGAATCTGAAATTCCAAAAAAAAGAAGGTTGGATAAGATCTGGATGATCCTATTTACTTGAGCTAAAAAAAATAGGGGAAATTCGTCATTTAAAGGAGTATTCTGGGAAAAAGATAGGATCAAGAGGAACCTGATTTTTTGATCTGAAAAATAATCTGAAAATATTTCAAACGACAACACAATTTATAAAGATACTGTCATTTGGTTTTCGAGAGACGCAGACAGTTAGAACTCACTGACAAGAAAATTT</canonical>
            <polymorphic>GAGAATTTTTTGTGCGGTGGTGGAGAAAATGGATTTTGCAGAATAGGAAAAAGATTGAAAGCTATAAGATTTTAAGTGGTATTTCGAAGAAATGACGTTAAGTGAATCTACAAAAAAAGTGGACATCCGGACAAACAGAAACTGTTGATGTCCAAAATCTAGGGAGATTTGATAAGTAAGAAATTGAGCAAGGCGCATAGCAAGCCGCATAAAAATTCATTTATCTTACTGACAAGAAAACTCAAAAAATTATCTTTTGAACGCAAAAACAATCTAATTCCTAGGACTATTTTGAGTCGAGTTACTGAAGTTATAGAGCGAGAGACGCAGTGTGTCTCGTTTCTCTGCGTATCTCACCTCAAAACTTTAAATGACTGTAACTCGGCTCAAAATCATGCTCCTAGCTCAATTTTGAACGGGTTTGGCATAAATTTTTTTTTCTACTTTTTGTTGATATTTTAAAAAAATAAACAACTTTTAAAACCAATTTTCGATTTTTWGCGGGCTGATGTGGGATTCCTTGATTTCTTTCGAACTTTAATCTCCTCCCTCTTTTTTGCCTAATTTGAATACCTAAACATACAGGAAACAGATGTCCTTCACTGAAACTAATTCTTTGCAGAGCACAAAAAAAACACAGAATAAAGAAACGGACGCGGGGCACAAATAGTGCATAATTGATGGGAGAAAATGTAGGGACGGACACTGGATAAAAAAGTGGATTACAATGGTATATCATTAGTAACGTTTTGAATCTGAAATTCCAAAAAAAAGAAGGTTGGATAAGATCTGGATGATCCTATTTACTTGAGCTAAAAAAAATAGGGGAAATTCGTCATTTAAAGGAGTATTCTGGGAAAAAGATAGGATCAAGAGGAACCTGATTTTTTGATCTGAAAAATAATCTGAAAATATTTCAAACGACAACACAATTTATAAAGATACTGTCATTTGGTTTTCGAGAGACGCAGACAGTTAGAACTCACTGACAAGAAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTACTGACAAGAAAACTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAGAGGGAGGAGATTAAAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>CTTACTGACAAGAAAACTCAAAAAATTATCTTTTGAACGCAAAAACAATCTAATTCCTAGGACTATTTTGAGTCGAGTTACTGAAGTTATAGAGCGAGAGACGCAGTGTGTCTCGTTTCTCTGCGTATCTCACCTCAAAACTTTAAATGACTGTAACTCGGCTCAAAATCATGCTCCTAGCTCAATTTTGAACGGGTTTGGCATAAATTTTTTTTTCTACTTTTTGTTGATATTTTAAAAAAATAAACAACTTTTAAAACCAATTTTCGATTTTTTGCGGGCTGATGTGGGATTCCTTGATTTCTTTCGAACTTTAATCTCCTCCCTCTT</canonical_amplicon>
		<polymorphic_amplicon>CTTACTGACAAGAAAACTCAAAAAATTATCTTTTGAACGCAAAAACAATCTAATTCCTAGGACTATTTTGAGTCGAGTTACTGAAGTTATAGAGCGAGAGACGCAGTGTGTCTCGTTTCTCTGCGTATCTCACCTCAAAACTTTAAATGACTGTAACTCGGCTCAAAATCATGCTCCTAGCTCAATTTTGAACGGGTTTGGCATAAATTTTTTTTTCTACTTTTTGTTGATATTTTAAAAAAATAAACAACTTTTAAAACCAATTTTCGATTTTTWGCGGGCTGATGTGGGATTCCTTGATTTCTTTCGAACTTTAATCTCCTCCCTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7831</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>232501</contig_pos>
        <strand>+</strand>
        <context>AATCCATTGT[C/T]TTTTATTCCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTGAATACACTTGCTTGTTTTCTTCTCGTCACCTTTCAAATCCATTGT</left_flank>
        <right_flank>TTTTATTCCCCTAAAATGATTCATTTCCCAGAGAAGACCAGTGAGCAGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGAGCTTTCTGAAGCTTAACAGGAACATGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAAAACAACTATTATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCACCCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAATCTTTGTGCCCTAATTGAATACACTTGCTTGTTTTCTTCTCGTCACCTTTCAAATCCATTGTTTTTTATTCCCCTAAAATGATTCATTTCCCAGAGAAGACCAGTGAGCAGAAAGTGACTCTAAACTACACAGCAATGTGTCACAAGTCATACGAAAAAAGTGGACAAATGATGATAAGATAACAACATTATGTAGACAGTTAGTATTGATTTTTATTTGTGTGGGGGTTTGAGTTCGCTAGGTTTTTGAACTTTCTATTATTATGAAGGTAAGTGACCTCATTTTTTTGGTCAACTAATTATTAGTGTGCATCAAAAAATAACCAAACAAAATTCATAGCTTTTAACTCTTTTATGGATCTTATTAAAGACGTTTTGAAGGTAATTCAAAAAATAGCTCTGCAAAAATGAAGTCTCTTTCACAAAAAGAGAACCTTTTTGGATCACTAGAATATTCAAAAAAGTAGCAATTTTATGCCATAGTTGCTGCTGAAAACCTAGAATAATCAAGTCTTCAAAAAAGCGCCATTTTTGAAGTCACTAATACGAGACAGTCATTTTAT</canonical>
            <polymorphic>CGAGAGCTTTCTGAAGCTTAACAGGAACATGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAAAACAACTATTATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCACCCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAATCTTTGTGCCCTAATTGAATACACTTGCTTGTTTTCTTCTCGTCACCTTTCAAATCCATTGTYTTTTATTCCCCTAAAATGATTCATTTCCCAGAGAAGACCAGTGAGCAGAAAGTGACTCTAAACTACACAGCAATGTGTCACAAGTCATACGAAAAAAGTGGACAAATGATGATAAGATAACAACATTATGTAGACAGTTAGTATTGATTTTTATTTGTGTGGGGGTTTGAGTTCGCTAGGTTTTTGAACTTTCTATTATTATGAAGGTAAGTGACCTCATTTTTTTGGTCAACTAATTATTAGTGTGCATCAAAAAATAACCAAACAAAATTCATAGCTTTTAACTCTTTTATGGATCTTATTAAAGACGTTTTGAAGGTAATTCAAAAAATAGCTCTGCAAAAATGAAGTCTCTTTCACAAAAAGAGAACCTTTTTGGATCACTAGAATATTCAAAAAAGTAGCAATTTTATGCCATAGTTGCTGCTGAAAACCTAGAATAATCAAGTCTTCAAAAAAGCGCCATTTTTGAAGTCACTAATACGAGACAGTCATTTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTACAAAATAAAACCGAAAA</pcr_primer_p1>
		<pcr_primer_p2>GTTTAGAGTCACTTTCTGCTCAC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCACCCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAATCTTTGTGCCCTAATTGAATACACTTGCTTGTTTTCTTCTCGTCACCTTTCAAATCCATTGTTTTTTATTCCCCTAAAATGATTCATTTCCCAGAGAAGACCAGTGAGCAGAAAGTGACTCTAAAC</canonical_amplicon>
		<polymorphic_amplicon>TCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCACCCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAATCTTTGTGCCCTAATTGAATACACTTGCTTGTTTTCTTCTCGTCACCTTTCAAATCCATTGTYTTTTATTCCCCTAAAATGATTCATTTCCCAGAGAAGACCAGTGAGCAGAAAGTGACTCTAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7832</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>232388</contig_pos>
        <strand>+</strand>
        <context>TGATTATTCA[C/T]CCGTTTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCA</left_flank>
        <right_flank>CCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCGATAGAAGAACAAAAAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTACATGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGAGCTTTCTGAAGCTTAACAGGAACATGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAAAACAACTATTATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCACCCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAATCTTTGTGCCCTAATTGAATACACTTGCTTGTTTTCTTCTCGTCACCTTTCAAATCCATTGTTTTTTATTCCCCTAAAATGATTCATTTCCCAGAGAAGACCAGTGAGCAGAAAGTGACTCTAAACTACACAGCAATGTGTCACAAGTCATACGAAAAAAGTGGACAAATGATGATAAGATAACAACATTATGTAGACAGTTAGTATTGATTTTTATTTGTGTGGGGGTTTGAGTTCGCTAGGTTTTTGAACTTTCTATTATTATGAAGGTAAGTGACCTCATTTTTTTGGTCAACTAATTATTAGTGTGCATCAAAAAATAACCAAACAAAATTCATAGCTTTTAACTCTTTTATGGATCTTATTAAAGACGTTTTGAAGGTAATTCAAAAAATAGCTCTGCAAAAATGAAGTCTCTTTCACAAAAAGAGAACCTTTTTGGATCACTAG</canonical>
            <polymorphic>TGCGATAGAAGAACAAAAAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTACATGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGAGCTTTCTGAAGCTTAACAGGAACATGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAAAACAACTATTATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCAYCCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAATCTTTGTGCCCTAATTGAATACACTTGCTTGTTTTCTTCTCGTCACCTTTCAAATCCATTGTTTTTTATTCCCCTAAAATGATTCATTTCCCAGAGAAGACCAGTGAGCAGAAAGTGACTCTAAACTACACAGCAATGTGTCACAAGTCATACGAAAAAAGTGGACAAATGATGATAAGATAACAACATTATGTAGACAGTTAGTATTGATTTTTATTTGTGTGGGGGTTTGAGTTCGCTAGGTTTTTGAACTTTCTATTATTATGAAGGTAAGTGACCTCATTTTTTTGGTCAACTAATTATTAGTGTGCATCAAAAAATAACCAAACAAAATTCATAGCTTTTAACTCTTTTATGGATCTTATTAAAGACGTTTTGAAGGTAATTCAAAAAATAGCTCTGCAAAAATGAAGTCTCTTTCACAAAAAGAGAACCTTTTTGGATCACTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>163 155 112 65 61 59 52 33 32 32 29 26 25 24 22 20 19 15 13 11 10 4 4 4 3 3 2 2</canonical_bands>
                <polymorphic_bands>163 155 112 65 61 59 52 44 33 32 32 29 26 24 22 20 15 13 11 10 4 4 4 3 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTGCTAAGCTCACTAACAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATGAATCATTTTAGGGGAATAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AACTGCTAAGCTCACTAACAAAAAACAACTATTATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCACCCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAATCTTTGTGCCCTAATTGAATACACTTGCTTGTTTTCTTCTCGTCACCTTTCAAATCCATTGTTTTTTATTCCCCTAAAATGATTCAT</canonical_amplicon>
		<polymorphic_amplicon>AACTGCTAAGCTCACTAACAAAAAACAACTATTATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCAYCCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAATCTTTGTGCCCTAATTGAATACACTTGCTTGTTTTCTTCTCGTCACCTTTCAAATCCATTGTTTTTTATTCCCCTAAAATGATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7833</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>232312</contig_pos>
        <strand>+</strand>
        <context>AAACAACTAT[A/T]ATATTTGAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAAAACAACTAT</left_flank>
        <right_flank>ATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAGTTCACTCATAAAAAGTTTGGCAGAGTGCCAAAACTAAATAAATGAAACTTGCAATATATATGAATATTGTTGCGATAGAAGAACAAAAAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTACATGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGAGCTTTCTGAAGCTTAACAGGAACATGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAAAACAACTATTATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCACCCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAATCTTTGTGCCCTAATTGAATACACTTGCTTGTTTTCTTCTCGTCACCTTTCAAATCCATTGTTTTTTATTCCCCTAAAATGATTCATTTCCCAGAGAAGACCAGTGAGCAGAAAGTGACTCTAAACTACACAGCAATGTGTCACAAGTCATACGAAAAAAGTGGACAAATGATGATAAGATAACAACATTATGTAGACAGTTAGTATTGATTTTTATTTGTGTGGGGGTTTGAGTTCGCTAGGTTTTTGAACTTTCTATTATTATGAAGGTAAGTGACCTCATTTTTTTGGTCAACTAATTATTAGTGTGCATCAAAAAATAACCAAACAAAATTCATAGCTTTTAACTCTTTTATGGATCTTATTAAAGACGT</canonical>
            <polymorphic>GAAAAGTTCACTCATAAAAAGTTTGGCAGAGTGCCAAAACTAAATAAATGAAACTTGCAATATATATGAATATTGTTGCGATAGAAGAACAAAAAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTACATGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGAGCTTTCTGAAGCTTAACAGGAACATGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAAAACAACTATWATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCACCCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAATCTTTGTGCCCTAATTGAATACACTTGCTTGTTTTCTTCTCGTCACCTTTCAAATCCATTGTTTTTTATTCCCCTAAAATGATTCATTTCCCAGAGAAGACCAGTGAGCAGAAAGTGACTCTAAACTACACAGCAATGTGTCACAAGTCATACGAAAAAAGTGGACAAATGATGATAAGATAACAACATTATGTAGACAGTTAGTATTGATTTTTATTTGTGTGGGGGTTTGAGTTCGCTAGGTTTTTGAACTTTCTATTATTATGAAGGTAAGTGACCTCATTTTTTTGGTCAACTAATTATTAGTGTGCATCAAAAAATAACCAAACAAAATTCATAGCTTTTAACTCTTTTATGGATCTTATTAAAGACGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATGAATGGAAGAAAAGTCA</pcr_primer_p1>
		<pcr_primer_p2>GGTGGACACTAGGTTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAAAACAACTATTATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACC</canonical_amplicon>
		<polymorphic_amplicon>CAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAAAACAACTATWATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7834</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>232247</contig_pos>
        <strand></strand>
        <context>agctttgaac[T/G]tttagccaaA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAAC</left_flank>
        <right_flank>TTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAATTTTTTGACATTTTCAAGTTTGAAAGGTTCTTCTAAATAATATTTGGCTTCATAAAAAGAGAAAAGTTCACTCATAAAAAGTTTGGCAGAGTGCCAAAACTAAATAAATGAAACTTGCAATATATATGAATATTGTTGCGATAGAAGAACAAAAAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTACATGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGAGCTTTCTGAAGCTTAACAGGAACATGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAAAACAACTATTATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCACCCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAATCTTTGTGCCCTAATTGAATACACTTGCTTGTTTTCTTCTCGTCACCTTTCAAATCCATTGTTTTTTATTCCCCTAAAATGATTCATTTCCCAGAGAAGACCAGTGAGCAGAAAGTGACTCTAAACTACACAGCAATGTGTCACAAGTCATACGAAAAAAGTGGACAAATGATGATAAGATAACAACATTATGTAGACAGTTAGTATTGATTTTTATTTGTGTGGGGGTTTGAGTTCGCTAGGTTTTTGAACTTTCTATTATTATGAAGGTAAGTGACCTCATTTTTTTGGTCAACTAATTATTAGTGT</canonical>
            <polymorphic>AACAATTTTTTGACATTTTCAAGTTTGAAAGGTTCTTCTAAATAATATTTGGCTTCATAAAAAGAGAAAAGTTCACTCATAAAAAGTTTGGCAGAGTGCCAAAACTAAATAAATGAAACTTGCAATATATATGAATATTGTTGCGATAGAAGAACAAAAAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTACATGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGAGCTTTCTGAAGCTTAACAGGAACATGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACKTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAAAACAACTATTATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCACCCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAATCTTTGTGCCCTAATTGAATACACTTGCTTGTTTTCTTCTCGTCACCTTTCAAATCCATTGTTTTTTATTCCCCTAAAATGATTCATTTCCCAGAGAAGACCAGTGAGCAGAAAGTGACTCTAAACTACACAGCAATGTGTCACAAGTCATACGAAAAAAGTGGACAAATGATGATAAGATAACAACATTATGTAGACAGTTAGTATTGATTTTTATTTGTGTGGGGGTTTGAGTTCGCTAGGTTTTTGAACTTTCTATTATTATGAAGGTAAGTGACCTCATTTTTTTGGTCAACTAATTATTAGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTTTTGCAATTAAGATGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTTAGTGAGCTTAGCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACKTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7835</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>232233</contig_pos>
        <strand></strand>
        <context>aagaagggcc[C/G]tctagctttg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCC</left_flank>
        <right_flank>TCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGAAACTGCCAAACAATTTTTTGACATTTTCAAGTTTGAAAGGTTCTTCTAAATAATATTTGGCTTCATAAAAAGAGAAAAGTTCACTCATAAAAAGTTTGGCAGAGTGCCAAAACTAAATAAATGAAACTTGCAATATATATGAATATTGTTGCGATAGAAGAACAAAAAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTACATGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGAGCTTTCTGAAGCTTAACAGGAACATGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAAAACAACTATTATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCACCCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAATCTTTGTGCCCTAATTGAATACACTTGCTTGTTTTCTTCTCGTCACCTTTCAAATCCATTGTTTTTTATTCCCCTAAAATGATTCATTTCCCAGAGAAGACCAGTGAGCAGAAAGTGACTCTAAACTACACAGCAATGTGTCACAAGTCATACGAAAAAAGTGGACAAATGATGATAAGATAACAACATTATGTAGACAGTTAGTATTGATTTTTATTTGTGTGGGGGTTTGAGTTCGCTAGGTTTTTGAACTTTCTATTATTATGAAGGTAAGTGACCTCATTTTTTTGGTCAA</canonical>
            <polymorphic>TTTTGAAACTGCCAAACAATTTTTTGACATTTTCAAGTTTGAAAGGTTCTTCTAAATAATATTTGGCTTCATAAAAAGAGAAAAGTTCACTCATAAAAAGTTTGGCAGAGTGCCAAAACTAAATAAATGAAACTTGCAATATATATGAATATTGTTGCGATAGAAGAACAAAAAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTACATGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGAGCTTTCTGAAGCTTAACAGGAACATGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCSTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAAAACAACTATTATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCACCCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAATCTTTGTGCCCTAATTGAATACACTTGCTTGTTTTCTTCTCGTCACCTTTCAAATCCATTGTTTTTTATTCCCCTAAAATGATTCATTTCCCAGAGAAGACCAGTGAGCAGAAAGTGACTCTAAACTACACAGCAATGTGTCACAAGTCATACGAAAAAAGTGGACAAATGATGATAAGATAACAACATTATGTAGACAGTTAGTATTGATTTTTATTTGTGTGGGGGTTTGAGTTCGCTAGGTTTTTGAACTTTCTATTATTATGAAGGTAAGTGACCTCATTTTTTTGGTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGGCCC</site>
                <isoschizomers>
                    <enzyme>ApaI</enzyme>
                    <enzyme>Bsp120I</enzyme>
                    <enzyme>PspOMI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>499 410 91</canonical_bands>
                <polymorphic_bands>590 410</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>499 285 216</canonical_bands>
                <polymorphic_bands>715 285</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>499 285 125 91</canonical_bands>
                <polymorphic_bands>590 285 125</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTCCTTTTGCAATTAAGAT</pcr_primer_p1>
		<pcr_primer_p2>TGAGCTTAGCAGTTAGATAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCA</canonical_amplicon>
		<polymorphic_amplicon>TCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCSTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7836</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>232210</contig_pos>
        <strand></strand>
        <context>CTCTARTacc[A/G]taaaacctgt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACC</left_flank>
        <right_flank>TAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAACTTCCGACTAAAACACATTTTTTGAAACTGCCAAACAATTTTTTGACATTTTCAAGTTTGAAAGGTTCTTCTAAATAATATTTGGCTTCATAAAAAGAGAAAAGTTCACTCATAAAAAGTTTGGCAGAGTGCCAAAACTAAATAAATGAAACTTGCAATATATATGAATATTGTTGCGATAGAAGAACAAAAAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTACATGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGAGCTTTCTGAAGCTTAACAGGAACATGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAAAACAACTATTATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCACCCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAATCTTTGTGCCCTAATTGAATACACTTGCTTGTTTTCTTCTCGTCACCTTTCAAATCCATTGTTTTTTATTCCCCTAAAATGATTCATTTCCCAGAGAAGACCAGTGAGCAGAAAGTGACTCTAAACTACACAGCAATGTGTCACAAGTCATACGAAAAAAGTGGACAAATGATGATAAGATAACAACATTATGTAGACAGTTAGTATTGATTTTTATTTGTGTGGGGGTTTGAGTTCGCTAGGTTTTTGAACTTTCTATTATTATGAAGGTA</canonical>
            <polymorphic>GTAACTTCCGACTAAAACACATTTTTTGAAACTGCCAAACAATTTTTTGACATTTTCAAGTTTGAAAGGTTCTTCTAAATAATATTTGGCTTCATAAAAAGAGAAAAGTTCACTCATAAAAAGTTTGGCAGAGTGCCAAAACTAAATAAATGAAACTTGCAATATATATGAATATTGTTGCGATAGAAGAACAAAAAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTACATGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGAGCTTTCTGAAGCTTAACAGGAACATGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCRTAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAAAACAACTATTATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCACCCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAATCTTTGTGCCCTAATTGAATACACTTGCTTGTTTTCTTCTCGTCACCTTTCAAATCCATTGTTTTTTATTCCCCTAAAATGATTCATTTCCCAGAGAAGACCAGTGAGCAGAAAGTGACTCTAAACTACACAGCAATGTGTCACAAGTCATACGAAAAAAGTGGACAAATGATGATAAGATAACAACATTATGTAGACAGTTAGTATTGATTTTTATTTGTGTGGGGGTTTGAGTTCGCTAGGTTTTTGAACTTTCTATTATTATGAAGGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTCCTTTTGCAATTAAGAT</pcr_primer_p1>
		<pcr_primer_p2>TGAGCTTAGCAGTTAGATAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCA</canonical_amplicon>
		<polymorphic_amplicon>TCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCRTAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7837</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>232205</contig_pos>
        <strand></strand>
        <context>AAAATCTCTA[G/A]Taccrtaaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTA</left_flank>
        <right_flank>TACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAAGTAACTTCCGACTAAAACACATTTTTTGAAACTGCCAAACAATTTTTTGACATTTTCAAGTTTGAAAGGTTCTTCTAAATAATATTTGGCTTCATAAAAAGAGAAAAGTTCACTCATAAAAAGTTTGGCAGAGTGCCAAAACTAAATAAATGAAACTTGCAATATATATGAATATTGTTGCGATAGAAGAACAAAAAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTACATGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGAGCTTTCTGAAGCTTAACAGGAACATGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAAAACAACTATTATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCACCCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAATCTTTGTGCCCTAATTGAATACACTTGCTTGTTTTCTTCTCGTCACCTTTCAAATCCATTGTTTTTTATTCCCCTAAAATGATTCATTTCCCAGAGAAGACCAGTGAGCAGAAAGTGACTCTAAACTACACAGCAATGTGTCACAAGTCATACGAAAAAAGTGGACAAATGATGATAAGATAACAACATTATGTAGACAGTTAGTATTGATTTTTATTTGTGTGGGGGTTTGAGTTCGCTAGGTTTTTGAACTTTCTATTATTATGA</canonical>
            <polymorphic>TTCAAGTAACTTCCGACTAAAACACATTTTTTGAAACTGCCAAACAATTTTTTGACATTTTCAAGTTTGAAAGGTTCTTCTAAATAATATTTGGCTTCATAAAAAGAGAAAAGTTCACTCATAAAAAGTTTGGCAGAGTGCCAAAACTAAATAAATGAAACTTGCAATATATATGAATATTGTTGCGATAGAAGAACAAAAAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTACATGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGAGCTTTCTGAAGCTTAACAGGAACATGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTARTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAAAACAACTATTATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCACCCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAATCTTTGTGCCCTAATTGAATACACTTGCTTGTTTTCTTCTCGTCACCTTTCAAATCCATTGTTTTTTATTCCCCTAAAATGATTCATTTCCCAGAGAAGACCAGTGAGCAGAAAGTGACTCTAAACTACACAGCAATGTGTCACAAGTCATACGAAAAAAGTGGACAAATGATGATAAGATAACAACATTATGTAGACAGTTAGTATTGATTTTTATTTGTGTGGGGGTTTGAGTTCGCTAGGTTTTTGAACTTTCTATTATTATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>497 324 118 33 28</canonical_bands>
                <polymorphic_bands>530 324 118 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTCCTTTTGCAATTAAGAT</pcr_primer_p1>
		<pcr_primer_p2>TGAGCTTAGCAGTTAGATAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCA</canonical_amplicon>
		<polymorphic_amplicon>TCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTARTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7838</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>232173</contig_pos>
        <strand>+</strand>
        <context>AGGAAACTTT[A/G/T]AAAAAAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G/T</alleles>
        <left_flank>AATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTT</left_flank>
        <right_flank>AAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTGAAGAATCCGGGAAGAGAGTTCTGGAAGGTTCAAGTAACTTCCGACTAAAACACATTTTTTGAAACTGCCAAACAATTTTTTGACATTTTCAAGTTTGAAAGGTTCTTCTAAATAATATTTGGCTTCATAAAAAGAGAAAAGTTCACTCATAAAAAGTTTGGCAGAGTGCCAAAACTAAATAAATGAAACTTGCAATATATATGAATATTGTTGCGATAGAAGAACAAAAAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTACATGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGAGCTTTCTGAAGCTTAACAGGAACATGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAAAACAACTATTATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCACCCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAATCTTTGTGCCCTAATTGAATACACTTGCTTGTTTTCTTCTCGTCACCTTTCAAATCCATTGTTTTTTATTCCCCTAAAATGATTCATTTCCCAGAGAAGACCAGTGAGCAGAAAGTGACTCTAAACTACACAGCAATGTGTCACAAGTCATACGAAAAAAGTGGACAAATGATGATAAGATAACAACATTATGTAGACAGTTAGTATTGATTTTTATTTGTGTGGGGGTTTGAGT</canonical>
            <polymorphic>GTTGAAGAATCCGGGAAGAGAGTTCTGGAAGGTTCAAGTAACTTCCGACTAAAACACATTTTTTGAAACTGCCAAACAATTTTTTGACATTTTCAAGTTTGAAAGGTTCTTCTAAATAATATTTGGCTTCATAAAAAGAGAAAAGTTCACTCATAAAAAGTTTGGCAGAGTGCCAAAACTAAATAAATGAAACTTGCAATATATATGAATATTGTTGCGATAGAAGAACAAAAAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTACATGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGAGCTTTCTGAAGCTTAACAGGAACATGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTRAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAAAACAACTATTATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCACCCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAATCTTTGTGCCCTAATTGAATACACTTGCTTGTTTTCTTCTCGTCACCTTTCAAATCCATTGTTTTTTATTCCCCTAAAATGATTCATTTCCCAGAGAAGACCAGTGAGCAGAAAGTGACTCTAAACTACACAGCAATGTGTCACAAGTCATACGAAAAAAGTGGACAAATGATGATAAGATAACAACATTATGTAGACAGTTAGTATTGATTTTTATTTGTGTGGGGGTTTGAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>407 315 184 94</canonical_bands>
                <polymorphic_bands>407 315 278</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>314 251 157 112 83 40 32 11</canonical_bands>
                <polymorphic_bands>314 251 157 123 83 40 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTCCTTTTGCAATTAAGAT</pcr_primer_p1>
		<pcr_primer_p2>TGAGCTTAGCAGTTAGATAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCA</canonical_amplicon>
		<polymorphic_amplicon>TCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTRAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7839</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>232150</contig_pos>
        <strand>+</strand>
        <context>GAAGCCAGTC[A/T]GGAAAATGGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTC</left_flank>
        <right_flank>GGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGAAAAGCGACGACTTCTGTAGTTGAAGAATCCGGGAAGAGAGTTCTGGAAGGTTCAAGTAACTTCCGACTAAAACACATTTTTTGAAACTGCCAAACAATTTTTTGACATTTTCAAGTTTGAAAGGTTCTTCTAAATAATATTTGGCTTCATAAAAAGAGAAAAGTTCACTCATAAAAAGTTTGGCAGAGTGCCAAAACTAAATAAATGAAACTTGCAATATATATGAATATTGTTGCGATAGAAGAACAAAAAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTACATGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGAGCTTTCTGAAGCTTAACAGGAACATGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAAAACAACTATTATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCACCCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAATCTTTGTGCCCTAATTGAATACACTTGCTTGTTTTCTTCTCGTCACCTTTCAAATCCATTGTTTTTTATTCCCCTAAAATGATTCATTTCCCAGAGAAGACCAGTGAGCAGAAAGTGACTCTAAACTACACAGCAATGTGTCACAAGTCATACGAAAAAAGTGGACAAATGATGATAAGATAACAACATTATGTAGACAGTTAGTATTGATT</canonical>
            <polymorphic>AATGAAAAGCGACGACTTCTGTAGTTGAAGAATCCGGGAAGAGAGTTCTGGAAGGTTCAAGTAACTTCCGACTAAAACACATTTTTTGAAACTGCCAAACAATTTTTTGACATTTTCAAGTTTGAAAGGTTCTTCTAAATAATATTTGGCTTCATAAAAAGAGAAAAGTTCACTCATAAAAAGTTTGGCAGAGTGCCAAAACTAAATAAATGAAACTTGCAATATATATGAATATTGTTGCGATAGAAGAACAAAAAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTACATGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGAGCTTTCTGAAGCTTAACAGGAACATGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCWGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAAAACAACTATTATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCACCCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAATCTTTGTGCCCTAATTGAATACACTTGCTTGTTTTCTTCTCGTCACCTTTCAAATCCATTGTTTTTTATTCCCCTAAAATGATTCATTTCCCAGAGAAGACCAGTGAGCAGAAAGTGACTCTAAACTACACAGCAATGTGTCACAAGTCATACGAAAAAAGTGGACAAATGATGATAAGATAACAACATTATGTAGACAGTTAGTATTGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTCCTTTTGCAATTAAGAT</pcr_primer_p1>
		<pcr_primer_p2>TGAGCTTAGCAGTTAGATAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCA</canonical_amplicon>
		<polymorphic_amplicon>TCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCWGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7840</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>232116</contig_pos>
        <strand>+</strand>
        <context>GYCTGAAGCT[C/T]ACAATGAATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCT</left_flank>
        <right_flank>ACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTCACTCTACTCGTTTTTAGATTAAGAAGAGGAAATGAAAAGCGACGACTTCTGTAGTTGAAGAATCCGGGAAGAGAGTTCTGGAAGGTTCAAGTAACTTCCGACTAAAACACATTTTTTGAAACTGCCAAACAATTTTTTGACATTTTCAAGTTTGAAAGGTTCTTCTAAATAATATTTGGCTTCATAAAAAGAGAAAAGTTCACTCATAAAAAGTTTGGCAGAGTGCCAAAACTAAATAAATGAAACTTGCAATATATATGAATATTGTTGCGATAGAAGAACAAAAAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTACATGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGAGCTTTCTGAAGCTTAACAGGAACATGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAAAACAACTATTATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCACCCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAATCTTTGTGCCCTAATTGAATACACTTGCTTGTTTTCTTCTCGTCACCTTTCAAATCCATTGTTTTTTATTCCCCTAAAATGATTCATTTCCCAGAGAAGACCAGTGAGCAGAAAGTGACTCTAAACTACACAGCAATGTGTCACAAGTCATACGAAAAAAGTGGACAAATGATGATAA</canonical>
            <polymorphic>CGTCACTCTACTCGTTTTTAGATTAAGAAGAGGAAATGAAAAGCGACGACTTCTGTAGTTGAAGAATCCGGGAAGAGAGTTCTGGAAGGTTCAAGTAACTTCCGACTAAAACACATTTTTTGAAACTGCCAAACAATTTTTTGACATTTTCAAGTTTGAAAGGTTCTTCTAAATAATATTTGGCTTCATAAAAAGAGAAAAGTTCACTCATAAAAAGTTTGGCAGAGTGCCAAAACTAAATAAATGAAACTTGCAATATATATGAATATTGTTGCGATAGAAGAACAAAAAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTACATGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGAGCTTTCTGAAGCTTAACAGGAACATGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTYACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAAAACAACTATTATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCACCCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAATCTTTGTGCCCTAATTGAATACACTTGCTTGTTTTCTTCTCGTCACCTTTCAAATCCATTGTTTTTTATTCCCCTAAAATGATTCATTTCCCAGAGAAGACCAGTGAGCAGAAAGTGACTCTAAACTACACAGCAATGTGTCACAAGTCATACGAAAAAAGTGGACAAATGATGATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 399 96</canonical_bands>
                <polymorphic_bands>601 399</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTCCTTTTGCAATTAAGAT</pcr_primer_p1>
		<pcr_primer_p2>TGAGCTTAGCAGTTAGATAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCA</canonical_amplicon>
		<polymorphic_amplicon>TCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTYACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7841</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>232029</contig_pos>
        <strand></strand>
        <context>TTAACAGGAA[C/T]YTGTCTACTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAATGGTTTAAAGTTTTCTCTTCGAGAGCTTTCTGAAGCTTAACAGGAA</left_flank>
        <right_flank>ATGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAGCAGAATCTATTACGTACTGAAAAATGAGACTAATTTGAAGGAAAATGTGGAGAAGATGTGTCCGTAATAACCGTCGAACATACGTCACTCTACTCGTTTTTAGATTAAGAAGAGGAAATGAAAAGCGACGACTTCTGTAGTTGAAGAATCCGGGAAGAGAGTTCTGGAAGGTTCAAGTAACTTCCGACTAAAACACATTTTTTGAAACTGCCAAACAATTTTTTGACATTTTCAAGTTTGAAAGGTTCTTCTAAATAATATTTGGCTTCATAAAAAGAGAAAAGTTCACTCATAAAAAGTTTGGCAGAGTGCCAAAACTAAATAAATGAAACTTGCAATATATATGAATATTGTTGCGATAGAAGAACAAAAAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTACATGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGAGCTTTCTGAAGCTTAACAGGAACATGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAAAACAACTATTATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCACCCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAATCTTTGTGCCCTAATTGAATACACTTGCTTGTTTTCTTCTCGTCACCTTTCAAATCCATTGTTTTTTATTCCCCTAAAATGATTCATTTCC</canonical>
            <polymorphic>AGAAGCAGAATCTATTACGTACTGAAAAATGAGACTAATTTGAAGGAAAATGTGGAGAAGATGTGTCCGTAATAACCGTCGAACATACGTCACTCTACTCGTTTTTAGATTAAGAAGAGGAAATGAAAAGCGACGACTTCTGTAGTTGAAGAATCCGGGAAGAGAGTTCTGGAAGGTTCAAGTAACTTCCGACTAAAACACATTTTTTGAAACTGCCAAACAATTTTTTGACATTTTCAAGTTTGAAAGGTTCTTCTAAATAATATTTGGCTTCATAAAAAGAGAAAAGTTCACTCATAAAAAGTTTGGCAGAGTGCCAAAACTAAATAAATGAAACTTGCAATATATATGAATATTGTTGCGATAGAAGAACAAAAAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTACATGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGAGCTTTCTGAAGCTTAACAGGAAYATGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAAAACAACTATTATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCACCCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAATCTTTGTGCCCTAATTGAATACACTTGCTTGTTTTCTTCTCGTCACCTTTCAAATCCATTGTTTTTTATTCCCCTAAAATGATTCATTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>499 270 231</canonical_bands>
                <polymorphic_bands>730 270</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>499 270 231</canonical_bands>
                <polymorphic_bands>730 270</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>503 266 231</canonical_bands>
                <polymorphic_bands>734 266</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>389 269 231 74 37</canonical_bands>
                <polymorphic_bands>389 305 269 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCCAAAACTAAATAAATGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TGAAATCGAAAATGGAATACTAA</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TGCCAAAACTAAATAAATGAAACTTGCAATATATATGAATATTGTTGCGATAGAAGAACAAAAAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTACATGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGAGCTTTCTGAAGCTTAACAGGAACATGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCA</canonical_amplicon>
		<polymorphic_amplicon>TGCCAAAACTAAATAAATGAAACTTGCAATATATATGAATATTGTTGCGATAGAAGAACAAAAAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTACATGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGAGCTTTCTGAAGCTTAACAGGAAYATGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7842</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>235070</contig_pos>
        <strand>+</strand>
        <context>ATTGTTATCC[A/G]GTGAAAAATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTTTGTATAGCTGCAAATGTATTTTTGTTGATGTTTACATTGTTATCC</left_flank>
        <right_flank>GTGAAAAATCTGGATGGGCATCGTGGGGATTCGCCGCGGCATTTTTCATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGTTGTGTAGACATTTTGAATTTCCAGGAATTAAAGTGAACCCATTTAGATTCTATTACGATATAGAAGATAGTGACGAGGATGAGATTATCAAAGAGTACTGGGATATGGTACCAGAAATGCCAGAACAACTTTCCCTTTGCTCTGCCTTCATGAATTCTTCAATCCGACGAGGTATTCTCCTTGGAATGGTTGTTAGTGCTACTCAGATCTTCTCTGGAAGCATGGTGTCGATTTCCTACTCCACAGAGTAAGAAGAGCTTCCAGAATCTAGAATCTAGATCTTGAATATTGATAATTTCCAGAATGTTCTCCGCTGTTTCTTTTGTGGATATCCTAGTTCCATTCCTTCCGGCGCTCGGATCCATAATCTCTATTCTTCTAACTATCCCAGCTCTTCGCTGGGTGGAGACACGTGGTCGGCGACCGCTTCTTCTCAAAACCCTGATGTTTTGTATAGCTGCAAATGTATTTTTGTTGATGTTTACATTGTTATCCGGTGAAAAATCTGGATGGGCATCGTGGGGATTCGCCGCGGCATTTTTCATGTATGGAGTTGGCTATAATTTGGGAGTTGGACCAGTTGCATATTTTTTACCGGCAGAACTGGTACCTCCAGAAGCCGCCAGTGCTAGTTTAGGAGCCGCCGTAGCTGTCAACTGGATTTGTACTATTACAACTACCCTCTTCTACTATCCATTGAGTAAAACAATCGGAGGATGGAGTTATCTCATTTTCATTATCCCAACGTATGATTTTTTTAATAATTAAAATAACTCTAACTATTTGCAGATCTTTGTTTTCAATGATTTTATGGAGGTTACTACCGGAAACTAAGTTTCATTATAAGGTAAAAGAAAATTTGGTTTTTAATTTTTGTAAATTTTTGAAATACATTTTTCAGATTGATCCATTGGAAATTCGACTTCTCACCGATTTGGGACCATCCATAGCACCAAATTATGGAACTTTAGACTTAGATGAGCCAACGTTGTTTTA</canonical>
            <polymorphic>AGGTTGTGTAGACATTTTGAATTTCCAGGAATTAAAGTGAACCCATTTAGATTCTATTACGATATAGAAGATAGTGACGAGGATGAGATTATCAAAGAGTACTGGGATATGGTACCAGAAATGCCAGAACAACTTTCCCTTTGCTCTGCCTTCATGAATTCTTCAATCCGACGAGGTATTCTCCTTGGAATGGTTGTTAGTGCTACTCAGATCTTCTCTGGAAGCATGGTGTCGATTTCCTACTCCACAGAGTAAGAAGAGCTTCCAGAATCTAGAATCTAGATCTTGAATATTGATAATTTCCAGAATGTTCTCCGCTGTTTCTTTTGTGGATATCCTAGTTCCATTCCTTCCGGCGCTCGGATCCATAATCTCTATTCTTCTAACTATCCCAGCTCTTCGCTGGGTGGAGACACGTGGTCGGCGACCGCTTCTTCTCAAAACCCTGATGTTTTGTATAGCTGCAAATGTATTTTTGTTGATGTTTACATTGTTATCCRGTGAAAAATCTGGATGGGCATCGTGGGGATTCGCCGCGGCATTTTTCATGTATGGAGTTGGCTATAATTTGGGAGTTGGACCAGTTGCATATTTTTTACCGGCAGAACTGGTACCTCCAGAAGCCGCCAGTGCTAGTTTAGGAGCCGCCGTAGCTGTCAACTGGATTTGTACTATTACAACTACCCTCTTCTACTATCCATTGAGTAAAACAATCGGAGGATGGAGTTATCTCATTTTCATTATCCCAACGTATGATTTTTTTAATAATTAAAATAACTCTAACTATTTGCAGATCTTTGTTTTCAATGATTTTATGGAGGTTACTACCGGAAACTAAGTTTCATTATAAGGTAAAAGAAAATTTGGTTTTTAATTTTTGTAAATTTTTGAAATACATTTTTCAGATTGATCCATTGGAAATTCGACTTCTCACCGATTTGGGACCATCCATAGCACCAAATTATGGAACTTTAGACTTAGATGAGCCAACGTTGTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>497 330 173</canonical_bands>
                <polymorphic_bands>827 173</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>353 229 172 145 101</canonical_bands>
                <polymorphic_bands>353 246 229 172</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTTTTGTGGATATCCTAGTTC</pcr_primer_p1>
		<pcr_primer_p2>CAAATTATAGCCAACTCCATACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTTTTGTGGATATCCTAGTTCCATTCCTTCCGGCGCTCGGATCCATAATCTCTATTCTTCTAACTATCCCAGCTCTTCGCTGGGTGGAGACACGTGGTCGGCGACCGCTTCTTCTCAAAACCCTGATGTTTTGTATAGCTGCAAATGTATTTTTGTTGATGTTTACATTGTTATCCGGTGAAAAATCTGGATGGGCATCGTGGGGATTCGCCGCGGCATTTTTCATGTATGGAGTTGGCTATAATTTG</canonical_amplicon>
		<polymorphic_amplicon>TTCTTTTGTGGATATCCTAGTTCCATTCCTTCCGGCGCTCGGATCCATAATCTCTATTCTTCTAACTATCCCAGCTCTTCGCTGGGTGGAGACACGTGGTCGGCGACCGCTTCTTCTCAAAACCCTGATGTTTTGTATAGCTGCAAATGTATTTTTGTTGATGTTTACATTGTTATCCRGTGAAAAATCTGGATGGGCATCGTGGGGATTCGCCGCGGCATTTTTCATGTATGGAGTTGGCTATAATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7843</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>235153</contig_pos>
        <strand>+</strand>
        <context>GAGTTGGACC[A/G]GTTGCATATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCGCGGCATTTTTCATGTATGGAGTTGGCTATAATTTGGGAGTTGGACC</left_flank>
        <right_flank>GTTGCATATTTTTTACCGGCAGAACTGGTACCTCCAGAAGCCGCCAGTGC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGATTATCAAAGAGTACTGGGATATGGTACCAGAAATGCCAGAACAACTTTCCCTTTGCTCTGCCTTCATGAATTCTTCAATCCGACGAGGTATTCTCCTTGGAATGGTTGTTAGTGCTACTCAGATCTTCTCTGGAAGCATGGTGTCGATTTCCTACTCCACAGAGTAAGAAGAGCTTCCAGAATCTAGAATCTAGATCTTGAATATTGATAATTTCCAGAATGTTCTCCGCTGTTTCTTTTGTGGATATCCTAGTTCCATTCCTTCCGGCGCTCGGATCCATAATCTCTATTCTTCTAACTATCCCAGCTCTTCGCTGGGTGGAGACACGTGGTCGGCGACCGCTTCTTCTCAAAACCCTGATGTTTTGTATAGCTGCAAATGTATTTTTGTTGATGTTTACATTGTTATCCGGTGAAAAATCTGGATGGGCATCGTGGGGATTCGCCGCGGCATTTTTCATGTATGGAGTTGGCTATAATTTGGGAGTTGGACCAGTTGCATATTTTTTACCGGCAGAACTGGTACCTCCAGAAGCCGCCAGTGCTAGTTTAGGAGCCGCCGTAGCTGTCAACTGGATTTGTACTATTACAACTACCCTCTTCTACTATCCATTGAGTAAAACAATCGGAGGATGGAGTTATCTCATTTTCATTATCCCAACGTATGATTTTTTTAATAATTAAAATAACTCTAACTATTTGCAGATCTTTGTTTTCAATGATTTTATGGAGGTTACTACCGGAAACTAAGTTTCATTATAAGGTAAAAGAAAATTTGGTTTTTAATTTTTGTAAATTTTTGAAATACATTTTTCAGATTGATCCATTGGAAATTCGACTTCTCACCGATTTGGGACCATCCATAGCACCAAATTATGGAACTTTAGACTTAGATGAGCCAACGTTGTTTTAATATTTGCAGTTTATAGCCCTTGTTAACAATGAAATTGTTGCTTTTTTTCTAAGCTCTCGTTCAACCTACTAAATTTTGATTT</canonical>
            <polymorphic>TGAGATTATCAAAGAGTACTGGGATATGGTACCAGAAATGCCAGAACAACTTTCCCTTTGCTCTGCCTTCATGAATTCTTCAATCCGACGAGGTATTCTCCTTGGAATGGTTGTTAGTGCTACTCAGATCTTCTCTGGAAGCATGGTGTCGATTTCCTACTCCACAGAGTAAGAAGAGCTTCCAGAATCTAGAATCTAGATCTTGAATATTGATAATTTCCAGAATGTTCTCCGCTGTTTCTTTTGTGGATATCCTAGTTCCATTCCTTCCGGCGCTCGGATCCATAATCTCTATTCTTCTAACTATCCCAGCTCTTCGCTGGGTGGAGACACGTGGTCGGCGACCGCTTCTTCTCAAAACCCTGATGTTTTGTATAGCTGCAAATGTATTTTTGTTGATGTTTACATTGTTATCCGGTGAAAAATCTGGATGGGCATCGTGGGGATTCGCCGCGGCATTTTTCATGTATGGAGTTGGCTATAATTTGGGAGTTGGACCRGTTGCATATTTTTTACCGGCAGAACTGGTACCTCCAGAAGCCGCCAGTGCTAGTTTAGGAGCCGCCGTAGCTGTCAACTGGATTTGTACTATTACAACTACCCTCTTCTACTATCCATTGAGTAAAACAATCGGAGGATGGAGTTATCTCATTTTCATTATCCCAACGTATGATTTTTTTAATAATTAAAATAACTCTAACTATTTGCAGATCTTTGTTTTCAATGATTTTATGGAGGTTACTACCGGAAACTAAGTTTCATTATAAGGTAAAAGAAAATTTGGTTTTTAATTTTTGTAAATTTTTGAAATACATTTTTCAGATTGATCCATTGGAAATTCGACTTCTCACCGATTTGGGACCATCCATAGCACCAAATTATGGAACTTTAGACTTAGATGAGCCAACGTTGTTTTAATATTTGCAGTTTATAGCCCTTGTTAACAATGAAATTGTTGCTTTTTTTCTAAGCTCTCGTTCAACCTACTAAATTTTGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTTTTGTATAGCTGCAAATGT</pcr_primer_p1>
		<pcr_primer_p2>TGGATAGTAGAAGAGGGTAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATGTTTTGTATAGCTGCAAATGTATTTTTGTTGATGTTTACATTGTTATCCGGTGAAAAATCTGGATGGGCATCGTGGGGATTCGCCGCGGCATTTTTCATGTATGGAGTTGGCTATAATTTGGGAGTTGGACCAGTTGCATATTTTTTACCGGCAGAACTGGTACCTCCAGAAGCCGCCAGTGCTAGTTTAGGAGCCGCCGTAGCTGTCAACTGGATTTGTACTATTACAACTACCCTCTTCTACTATCCA</canonical_amplicon>
		<polymorphic_amplicon>ATGTTTTGTATAGCTGCAAATGTATTTTTGTTGATGTTTACATTGTTATCCGGTGAAAAATCTGGATGGGCATCGTGGGGATTCGCCGCGGCATTTTTCATGTATGGAGTTGGCTATAATTTGGGAGTTGGACCRGTTGCATATTTTTTACCGGCAGAACTGGTACCTCCAGAAGCCGCCAGTGCTAGTTTAGGAGCCGCCGTAGCTGTCAACTGGATTTGTACTATTACAACTACCCTCTTCTACTATCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7866</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>235428</contig_pos>
        <strand></strand>
        <context>TAAGGTAAAA[G/A]AAAATTTGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGATTTTATGGAGGTTACTACCGGAAACTAAGTTTCATTATAAGGTAAAA</left_flank>
        <right_flank>AAAATTTGGTTTTTAATTTTTGTAAATTTTTGAAATACATTTTTCAGATT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGGATCCATAATCTCTATTCTTCTAACTATCCCAGCTCTTCGCTGGGTGGAGACACGTGGTCGGCGACCGCTTCTTCTCAAAACCCTGATGTTTTGTATAGCTGCAAATGTATTTTTGTTGATGTTTACATTGTTATCCGGTGAAAAATCTGGATGGGCATCGTGGGGATTCGCCGCGGCATTTTTCATGTATGGAGTTGGCTATAATTTGGGAGTTGGACCAGTTGCATATTTTTTACCGGCAGAACTGGTACCTCCAGAAGCCGCCAGTGCTAGTTTAGGAGCCGCCGTAGCTGTCAACTGGATTTGTACTATTACAACTACCCTCTTCTACTATCCATTGAGTAAAACAATCGGAGGATGGAGTTATCTCATTTTCATTATCCCAACGTATGATTTTTTTAATAATTAAAATAACTCTAACTATTTGCAGATCTTTGTTTTCAATGATTTTATGGAGGTTACTACCGGAAACTAAGTTTCATTATAAGGTAAAAGAAAATTTGGTTTTTAATTTTTGTAAATTTTTGAAATACATTTTTCAGATTGATCCATTGGAAATTCGACTTCTCACCGATTTGGGACCATCCATAGCACCAAATTATGGAACTTTAGACTTAGATGAGCCAACGTTGTTTTAATATTTGCAGTTTATAGCCCTTGTTAACAATGAAATTGTTGCTTTTTTTCTAAGCTCTCGTTCAACCTACTAAATTTTGATTTCAAAGGGAAAACATGAAAAAGTTTATTCAATAAAATTTGATAAACGTTTTTTAAGGCAGTACGGAATTTGATCTTATAAATGTGTAACTTATTTCCAATTTTACACTTCCCAATTCAAACTGCCGCCAACAACGACACTCCGCTCATGCCGCAGCGCGCGTTGTTTAGCGAAGCTCTCTTTCAAAAAAAAACTGCGTTCCAATCAATTTAATCGACTAAACTGGTTTTTTGTTGGTTTTTCAGCTATTTTTGAGTTTTTATTGATTCGAGGCCTT</canonical>
            <polymorphic>CTCGGATCCATAATCTCTATTCTTCTAACTATCCCAGCTCTTCGCTGGGTGGAGACACGTGGTCGGCGACCGCTTCTTCTCAAAACCCTGATGTTTTGTATAGCTGCAAATGTATTTTTGTTGATGTTTACATTGTTATCCGGTGAAAAATCTGGATGGGCATCGTGGGGATTCGCCGCGGCATTTTTCATGTATGGAGTTGGCTATAATTTGGGAGTTGGACCAGTTGCATATTTTTTACCGGCAGAACTGGTACCTCCAGAAGCCGCCAGTGCTAGTTTAGGAGCCGCCGTAGCTGTCAACTGGATTTGTACTATTACAACTACCCTCTTCTACTATCCATTGAGTAAAACAATCGGAGGATGGAGTTATCTCATTTTCATTATCCCAACGTATGATTTTTTTAATAATTAAAATAACTCTAACTATTTGCAGATCTTTGTTTTCAATGATTTTATGGAGGTTACTACCGGAAACTAAGTTTCATTATAAGGTAAAARAAAATTTGGTTTTTAATTTTTGTAAATTTTTGAAATACATTTTTCAGATTGATCCATTGGAAATTCGACTTCTCACCGATTTGGGACCATCCATAGCACCAAATTATGGAACTTTAGACTTAGATGAGCCAACGTTGTTTTAATATTTGCAGTTTATAGCCCTTGTTAACAATGAAATTGTTGCTTTTTTTCTAAGCTCTCGTTCAACCTACTAAATTTTGATTTCAAAGGGAAAACATGAAAAAGTTTATTCAATAAAATTTGATAAACGTTTTTTAAGGCAGTACGGAATTTGATCTTATAAATGTGTAACTTATTTCCAATTTTACACTTCCCAATTCAAACTGCCGCCAACAACGACACTCCGCTCATGCCGCAGCGCGCGTTGTTTAGCGAAGCTCTCTTTCAAAAAAAAACTGCGTTCCAATCAATTTAATCGACTAAACTGGTTTTTTGTTGGTTTTTCAGCTATTTTTGAGTTTTTATTGATTCGAGGCCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTATTTGCAGATCTTTGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>GTTAACAAGGGCTATAAACTGC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACTATTTGCAGATCTTTGTTTTCAATGATTTTATGGAGGTTACTACCGGAAACTAAGTTTCATTATAAGGTAAAAGAAAATTTGGTTTTTAATTTTTGTAAATTTTTGAAATACATTTTTCAGATTGATCCATTGGAAATTCGACTTCTCACCGATTTGGGACCATCCATAGCACCAAATTATGGAACTTTAGACTTAGATGAGCCAACGTTGTTTTAATATTTGCAGTTTATAGCCCTTGTTAAC</canonical_amplicon>
		<polymorphic_amplicon>ACTATTTGCAGATCTTTGTTTTCAATGATTTTATGGAGGTTACTACCGGAAACTAAGTTTCATTATAAGGTAAAARAAAATTTGGTTTTTAATTTTTGTAAATTTTTGAAATACATTTTTCAGATTGATCCATTGGAAATTCGACTTCTCACCGATTTGGGACCATCCATAGCACCAAATTATGGAACTTTAGACTTAGATGAGCCAACGTTGTTTTAATATTTGCAGTTTATAGCCCTTGTTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7868</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>239285</contig_pos>
        <strand>+</strand>
        <context>CTAGATATTC[C/T]ATGCGCCTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTAATGAATTGGGGGAGGATTTTCAATTCAGAATTAGGTCTAGATATTC</left_flank>
        <right_flank>ATGCGCCTTTAAAGCTTCTAGATTTTCGGAAATTTTTCGACAATTTTCGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCCCAACAGTTTATTATTAATTCATAGACCCGGTGTTCGTTTTCCGGTCGAGCAGTGAAAACCATAATAGAGAAAAGTGGTTTTCTATTATTTGAAACCGAGGGAGTGTGTGATTCGAGGAGAGTGCAGAGAGAGAGAGGAGGTAAACAGAACAGAGACCGGTGGAAAATGGTGTTCATCCGAATTTGTCTCTCTTTTTCCGAATTTTTTTCGATTTTTTCATGTTCTTTTTACATTGATTTTTCAAATCGAAAAAATTCAAATATCCCGCAAGATCGCTGGAAATTTGCAGTCTCACTTTCTTGCCATTTCATTCTCCCTTCGTCTCGCATACGAAATTCGCCCATCTAGTTTTTTTTTCAATGGTTTTTCTTTTCCGCTGACTTTCCATTTTTCCCGAACAGATGGCTTCTCTAATCTGGCGTAAAACGGCGCCGTTTCTCGCATACCTAATGAATTGGGGGAGGATTTTCAATTCAGAATTAGGTCTAGATATTCTATGCGCCTTTAAAGCTTCTAGATTTTCGGAAATTTTTCGACAATTTTCGGTATCTTTTCCGATAAAAAAAACGAAAAAAAAACTAAAAACGATGAAATGGTAAACTGTCTAAATTCGAGAAATTTCGACTAAAAATCATTATTTTGAGAAATCTCAAAATTAATGGAATATTCCGATTTTGAAAAGTTAGGCATTTCGGATTTTGAAAATTGCAAAATTTTGGAAATATTCTGATTTTTTAAAATTTTAGAAAATTGCGATTTTGAAATTTTTAGAATTTCTGGGACTTTGGATTTTTTAAAGAATTTGTTAACATGCCCATTTACAAAATTTCCAAATTTCGGAATATTCCTATTTTCAAATTTCGAAGTTTTTGAATTTCAGAATATTCCAGTTTGGAAAGTTTCAGAATTCCAGAATTTCGGAATATTCTGATTTACAAACTTTCAGAATTTCGGAATATTTCAGTTTTGAAAATTTCAGTATATTCTGATTTTGAA</canonical>
            <polymorphic>CCCCCAACAGTTTATTATTAATTCATAGACCCGGTGTTCGTTTTCCGGTCGAGCAGTGAAAACCATAATAGAGAAAAGTGGTTTTCTATTATTTGAAACCGAGGGAGTGTGTGATTCGAGGAGAGTGCAGAGAGAGAGAGGAGGTAAACAGAACAGAGACCGGTGGAAAATGGTGTTCATCCGAATTTGTCTCTCTTTTTCCGAATTTTTTTCGATTTTTTCATGTTCTTTTTACATTGATTTTTCAAATCGAAAAAATTCAAATATCCCGCAAGATCGCTGGAAATTTGCAGTCTCACTTTCTTGCCATTTCATTCTCCCTTCGTCTCGCATACGAAATTCGCCCATCTAGTTTTTTTTTCAATGGTTTTTCTTTTCCGCTGACTTTCCATTTTTCCCGAACAGATGGCTTCTCTAATCTGGCGTAAAACGGCGCCGTTTCTCGCATACCTAATGAATTGGGGGAGGATTTTCAATTCAGAATTAGGTCTAGATATTCYATGCGCCTTTAAAGCTTCTAGATTTTCGGAAATTTTTCGACAATTTTCGGTATCTTTTCCGATAAAAAAAACGAAAAAAAAACTAAAAACGATGAAATGGTAAACTGTCTAAATTCGAGAAATTTCGACTAAAAATCATTATTTTGAGAAATCTCAAAATTAATGGAATATTCCGATTTTGAAAAGTTAGGCATTTCGGATTTTGAAAATTGCAAAATTTTGGAAATATTCTGATTTTTTAAAATTTTAGAAAATTGCGATTTTGAAATTTTTAGAATTTCTGGGACTTTGGATTTTTTAAAGAATTTGTTAACATGCCCATTTACAAAATTTCCAAATTTCGGAATATTCCTATTTTCAAATTTCGAAGTTTTTGAATTTCAGAATATTCCAGTTTGGAAAGTTTCAGAATTCCAGAATTTCGGAATATTCTGATTTACAAACTTTCAGAATTTCGGAATATTTCAGTTTTGAAAATTTCAGTATATTCTGATTTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCAATGGTTTTTCTTTTC</pcr_primer_p1>
		<pcr_primer_p2>AGTTTACCATTTCATCGTTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCAATGGTTTTTCTTTTCCGCTGACTTTCCATTTTTCCCGAACAGATGGCTTCTCTAATCTGGCGTAAAACGGCGCCGTTTCTCGCATACCTAATGAATTGGGGGAGGATTTTCAATTCAGAATTAGGTCTAGATATTCTATGCGCCTTTAAAGCTTCTAGATTTTCGGAAATTTTTCGACAATTTTCGGTATCTTTTCCGATAAAAAAAACGAAAAAAAAACTAAAAACGATGAAATGGTAAACT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCAATGGTTTTTCTTTTCCGCTGACTTTCCATTTTTCCCGAACAGATGGCTTCTCTAATCTGGCGTAAAACGGCGCCGTTTCTCGCATACCTAATGAATTGGGGGAGGATTTTCAATTCAGAATTAGGTCTAGATATTCYATGCGCCTTTAAAGCTTCTAGATTTTCGGAAATTTTTCGACAATTTTCGGTATCTTTTCCGATAAAAAAAACGAAAAAAAAACTAAAAACGATGAAATGGTAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7869</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>239105</contig_pos>
        <strand>+</strand>
        <context>TTTCATTCTC[C/T]CTTCGTCTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGCAAGATCGCTGGAAATTTGCAGTCTCACTTTCTTGCCATTTCATTCTC</left_flank>
        <right_flank>CTTCGTCTCGCATACGAAATTCGCCCATCTAGTTTTTTTTTCAATGGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCCTCCAATCACTTATCAGGTATCTCTACCGTCTCTTCAGCCAATCAGTGCTCTCTCGTCTCGGAGAGAGCATCCTGAAGATTTGCTCACACACAAAGCCATCCCTCCGTTTTTCTCTCCGCCGGCCGTACCCGATTTTTCCGTTTTTCCGCCTATTGAATACCTTGTTGTTTAGGCCCCCCCAACAGTTTATTATTAATTCATAGACCCGGTGTTCGTTTTCCGGTCGAGCAGTGAAAACCATAATAGAGAAAAGTGGTTTTCTATTATTTGAAACCGAGGGAGTGTGTGATTCGAGGAGAGTGCAGAGAGAGAGAGGAGGTAAACAGAACAGAGACCGGTGGAAAATGGTGTTCATCCGAATTTGTCTCTCTTTTTCCGAATTTTTTTCGATTTTTTCATGTTCTTTTTACATTGATTTTTCAAATCGAAAAAATTCAAATATCCCGCAAGATCGCTGGAAATTTGCAGTCTCACTTTCTTGCCATTTCATTCTCCCTTCGTCTCGCATACGAAATTCGCCCATCTAGTTTTTTTTTCAATGGTTTTTCTTTTCCGCTGACTTTCCATTTTTCCCGAACAGATGGCTTCTCTAATCTGGCGTAAAACGGCGCCGTTTCTCGCATACCTAATGAATTGGGGGAGGATTTTCAATTCAGAATTAGGTCTAGATATTCTATGCGCCTTTAAAGCTTCTAGATTTTCGGAAATTTTTCGACAATTTTCGGTATCTTTTCCGATAAAAAAAACGAAAAAAAAACTAAAAACGATGAAATGGTAAACTGTCTAAATTCGAGAAATTTCGACTAAAAATCATTATTTTGAGAAATCTCAAAATTAATGGAATATTCCGATTTTGAAAAGTTAGGCATTTCGGATTTTGAAAATTGCAAAATTTTGGAAATATTCTGATTTTTTAAAATTTTAGAAAATTGCGATTTTGAAATTTTTAGAATTTCTGGGACTTTGGATTTTTTAAAGAATTTGTTAACATGCCC</canonical>
            <polymorphic>TTGCCTCCAATCACTTATCAGGTATCTCTACCGTCTCTTCAGCCAATCAGTGCTCTCTCGTCTCGGAGAGAGCATCCTGAAGATTTGCTCACACACAAAGCCATCCCTCCGTTTTTCTCTCCGCCGGCCGTACCCGATTTTTCCGTTTTTCCGCCTATTGAATACCTTGTTGTTTAGGCCCCCCCAACAGTTTATTATTAATTCATAGACCCGGTGTTCGTTTTCCGGTCGAGCAGTGAAAACCATAATAGAGAAAAGTGGTTTTCTATTATTTGAAACCGAGGGAGTGTGTGATTCGAGGAGAGTGCAGAGAGAGAGAGGAGGTAAACAGAACAGAGACCGGTGGAAAATGGTGTTCATCCGAATTTGTCTCTCTTTTTCCGAATTTTTTTCGATTTTTTCATGTTCTTTTTACATTGATTTTTCAAATCGAAAAAATTCAAATATCCCGCAAGATCGCTGGAAATTTGCAGTCTCACTTTCTTGCCATTTCATTCTCYCTTCGTCTCGCATACGAAATTCGCCCATCTAGTTTTTTTTTCAATGGTTTTTCTTTTCCGCTGACTTTCCATTTTTCCCGAACAGATGGCTTCTCTAATCTGGCGTAAAACGGCGCCGTTTCTCGCATACCTAATGAATTGGGGGAGGATTTTCAATTCAGAATTAGGTCTAGATATTCTATGCGCCTTTAAAGCTTCTAGATTTTCGGAAATTTTTCGACAATTTTCGGTATCTTTTCCGATAAAAAAAACGAAAAAAAAACTAAAAACGATGAAATGGTAAACTGTCTAAATTCGAGAAATTTCGACTAAAAATCATTATTTTGAGAAATCTCAAAATTAATGGAATATTCCGATTTTGAAAAGTTAGGCATTTCGGATTTTGAAAATTGCAAAATTTTGGAAATATTCTGATTTTTTAAAATTTTAGAAAATTGCGATTTTGAAATTTTTAGAATTTCTGGGACTTTGGATTTTTTAAAGAATTTGTTAACATGCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGAGAGAGAGGAGGTAAACAG</pcr_primer_p1>
		<pcr_primer_p2>GAAAAGAAAAACCATTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAGAGAGAGAGGAGGTAAACAGAACAGAGACCGGTGGAAAATGGTGTTCATCCGAATTTGTCTCTCTTTTTCCGAATTTTTTTCGATTTTTTCATGTTCTTTTTACATTGATTTTTCAAATCGAAAAAATTCAAATATCCCGCAAGATCGCTGGAAATTTGCAGTCTCACTTTCTTGCCATTTCATTCTCCCTTCGTCTCGCATACGAAATTCGCCCATCTAGTTTTTTTTTCAATGGTTTTTCTTTTC</canonical_amplicon>
		<polymorphic_amplicon>AGAGAGAGAGAGGAGGTAAACAGAACAGAGACCGGTGGAAAATGGTGTTCATCCGAATTTGTCTCTCTTTTTCCGAATTTTTTTCGATTTTTTCATGTTCTTTTTACATTGATTTTTCAAATCGAAAAAATTCAAATATCCCGCAAGATCGCTGGAAATTTGCAGTCTCACTTTCTTGCCATTTCATTCTCYCTTCGTCTCGCATACGAAATTCGCCCATCTAGTTTTTTTTTCAATGGTTTTTCTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7870</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>239050</contig_pos>
        <strand>+</strand>
        <context>AAAATTCAAA[C/T]ATCCCGCAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTTTCATGTTCTTTTTACATTGATTTTTCAAATCGAAAAAATTCAAA</left_flank>
        <right_flank>ATCCCGCAAGATCGCTGGAAATTTGCAGTCTCACTTTCTTGCCATTTCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGGCCTCCTTTCCCCCTTTCGAACAAGTGTTTCATGACAAGTGCTCCCCGCTGTTGCCTCCAATCACTTATCAGGTATCTCTACCGTCTCTTCAGCCAATCAGTGCTCTCTCGTCTCGGAGAGAGCATCCTGAAGATTTGCTCACACACAAAGCCATCCCTCCGTTTTTCTCTCCGCCGGCCGTACCCGATTTTTCCGTTTTTCCGCCTATTGAATACCTTGTTGTTTAGGCCCCCCCAACAGTTTATTATTAATTCATAGACCCGGTGTTCGTTTTCCGGTCGAGCAGTGAAAACCATAATAGAGAAAAGTGGTTTTCTATTATTTGAAACCGAGGGAGTGTGTGATTCGAGGAGAGTGCAGAGAGAGAGAGGAGGTAAACAGAACAGAGACCGGTGGAAAATGGTGTTCATCCGAATTTGTCTCTCTTTTTCCGAATTTTTTTCGATTTTTTCATGTTCTTTTTACATTGATTTTTCAAATCGAAAAAATTCAAATATCCCGCAAGATCGCTGGAAATTTGCAGTCTCACTTTCTTGCCATTTCATTCTCCCTTCGTCTCGCATACGAAATTCGCCCATCTAGTTTTTTTTTCAATGGTTTTTCTTTTCCGCTGACTTTCCATTTTTCCCGAACAGATGGCTTCTCTAATCTGGCGTAAAACGGCGCCGTTTCTCGCATACCTAATGAATTGGGGGAGGATTTTCAATTCAGAATTAGGTCTAGATATTCTATGCGCCTTTAAAGCTTCTAGATTTTCGGAAATTTTTCGACAATTTTCGGTATCTTTTCCGATAAAAAAAACGAAAAAAAAACTAAAAACGATGAAATGGTAAACTGTCTAAATTCGAGAAATTTCGACTAAAAATCATTATTTTGAGAAATCTCAAAATTAATGGAATATTCCGATTTTGAAAAGTTAGGCATTTCGGATTTTGAAAATTGCAAAATTTTGGAAATATTCTGATTTTTTAAAATTTTAGAAAATTGCGATTTTG</canonical>
            <polymorphic>ACTGGCCTCCTTTCCCCCTTTCGAACAAGTGTTTCATGACAAGTGCTCCCCGCTGTTGCCTCCAATCACTTATCAGGTATCTCTACCGTCTCTTCAGCCAATCAGTGCTCTCTCGTCTCGGAGAGAGCATCCTGAAGATTTGCTCACACACAAAGCCATCCCTCCGTTTTTCTCTCCGCCGGCCGTACCCGATTTTTCCGTTTTTCCGCCTATTGAATACCTTGTTGTTTAGGCCCCCCCAACAGTTTATTATTAATTCATAGACCCGGTGTTCGTTTTCCGGTCGAGCAGTGAAAACCATAATAGAGAAAAGTGGTTTTCTATTATTTGAAACCGAGGGAGTGTGTGATTCGAGGAGAGTGCAGAGAGAGAGAGGAGGTAAACAGAACAGAGACCGGTGGAAAATGGTGTTCATCCGAATTTGTCTCTCTTTTTCCGAATTTTTTTCGATTTTTTCATGTTCTTTTTACATTGATTTTTCAAATCGAAAAAATTCAAAYATCCCGCAAGATCGCTGGAAATTTGCAGTCTCACTTTCTTGCCATTTCATTCTCCCTTCGTCTCGCATACGAAATTCGCCCATCTAGTTTTTTTTTCAATGGTTTTTCTTTTCCGCTGACTTTCCATTTTTCCCGAACAGATGGCTTCTCTAATCTGGCGTAAAACGGCGCCGTTTCTCGCATACCTAATGAATTGGGGGAGGATTTTCAATTCAGAATTAGGTCTAGATATTCTATGCGCCTTTAAAGCTTCTAGATTTTCGGAAATTTTTCGACAATTTTCGGTATCTTTTCCGATAAAAAAAACGAAAAAAAAACTAAAAACGATGAAATGGTAAACTGTCTAAATTCGAGAAATTTCGACTAAAAATCATTATTTTGAGAAATCTCAAAATTAATGGAATATTCCGATTTTGAAAAGTTAGGCATTTCGGATTTTGAAAATTGCAAAATTTTGGAAATATTCTGATTTTTTAAAATTTTAGAAAATTGCGATTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGAGAGAGAGGAGGTAAACAG</pcr_primer_p1>
		<pcr_primer_p2>GAAAAGAAAAACCATTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAGAGAGAGAGGAGGTAAACAGAACAGAGACCGGTGGAAAATGGTGTTCATCCGAATTTGTCTCTCTTTTTCCGAATTTTTTTCGATTTTTTCATGTTCTTTTTACATTGATTTTTCAAATCGAAAAAATTCAAATATCCCGCAAGATCGCTGGAAATTTGCAGTCTCACTTTCTTGCCATTTCATTCTCCCTTCGTCTCGCATACGAAATTCGCCCATCTAGTTTTTTTTTCAATGGTTTTTCTTTTC</canonical_amplicon>
		<polymorphic_amplicon>AGAGAGAGAGAGGAGGTAAACAGAACAGAGACCGGTGGAAAATGGTGTTCATCCGAATTTGTCTCTCTTTTTCCGAATTTTTTTCGATTTTTTCATGTTCTTTTTACATTGATTTTTCAAATCGAAAAAATTCAAAYATCCCGCAAGATCGCTGGAAATTTGCAGTCTCACTTTCTTGCCATTTCATTCTCCCTTCGTCTCGCATACGAAATTCGCCCATCTAGTTTTTTTTTCAATGGTTTTTCTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7871</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>282361</contig_pos>
        <strand></strand>
        <context>AAACTAAAAA[G/A]CCAAAAARGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATCAGAAGTTTGAAATTAAAATTTCTTAAAAATCACATCAAAACTAAAAA</left_flank>
        <right_flank>CCAAAAAAGGTACTGTAGCTCGAAAAATATCATCGTATTTGCTCTGATAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATAATGGATAGCAGAACATGATACCCTTTGACGGACTGGAACGCCGGATGGTATGCTCCAGAAAACATCTGAAGAATTAATTGGAATTTAAATGCAAGATTCGGAAACCTACAGTAGTACAAAACTCATCATCAAGTTGCACCGCGTAGTTGTACATGACAGGACACCCGGATGGTGAATTCTTCAAATAACAATTGGAAGAAGAAGAGTAAAAATTTGGAAATTCAATTAGTCGGTCAAAATGGCGTCAGCAATGAAAAGTGAACAAAAGGACAACAATTTGGAGAAGTAGAAGAAGGAGGAGGGACATAAAAAAGTACACATTTCTAATTGACATGGGACACTTGTCACATTTTTGACAAAGATGAAAAATATTGGCAGGAAAAGTATATTTGGATAGTTTGAGGACAGTGCAATGGGATCAGTGGTCAGTATGGGATTTAGAAAGATCAGAAGTTTGAAATTAAAATTTCTTAAAAATCACATCAAAACTAAAAAGCCAAAAAAGGTACTGTAGCTCGAAAAATATCATCGTATTTGCTCTGATAAAAGCCCATCGTATACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAATTTTGCCAACTAATAAAAGATTGGTGATATTTTGATAAACAATTTATCAGTTGACCACTTTTTGATATCTTTTATAGAAATCGAGATAATTGATCTCAAAGTTAACAGTTTGAATAGGTTCATATAAAATTCTCACAAATTAGAATGGTCACTTAAAGCTTGGGGTACTGTAGTTGTGCAATAAAGCGGCTTAAACCCTGCCGCCGCTATTCCTCAAATAACAAACCGTCTACTTGATGATCAGAATCCAGGAAATTTGAATTAAATGTATCTGGATCCCTGTAAAAGATTTAACAATGATACTATCAACTGATAAAATATTGTTGGTATTATGATAAAAATTTTTGTTAGATTCGCAAAGGAATGTGTATGAAAATTGAATTTCCAACTAAAC</canonical>
            <polymorphic>TATAATGGATAGCAGAACATGATACCCTTTGACGGACTGGAACGCCGGATGGTATGCTCCAGAAAACATCTGAAGAATTAATTGGAATTTAAATGCAAGATTCGGAAACCTACAGTAGTACAAAACTCATCATCAAGTTGCACCGCGTAGTTGTACATGACAGGACACCCGGATGGTGAATTCTTCAAATAACAATTGGAAGAAGAAGAGTAAAAATTTGGAAATTCAATTAGTCGGTCAAAATGGCGTCAGCAATGAAAAGTGAACAAAAGGACAACAATTTGGAGAAGTAGAAGAAGGAGGAGGGACATAAAAAAGTACACATTTCTAATTGACATGGGACACTTGTCACATTTTTGACAAAGATGAAAAATATTGGCAGGAAAAGTATATTTGGATAGTTTGAGGACAGTGCAATGGGATCAGTGGTCAGTATGGGATTTAGAAAGATCAGAAGTTTGAAATTAAAATTTCTTAAAAATCACATCAAAACTAAAAARCCAAAAAAGGTACTGTAGCTCGAAAAATATCATCGTATTTGCTCTGATAAAAGCCCATCGTATACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAATTTTGCCAACTAATAAAAGATTGGTGATATTTTGATAAACAATTTATCAGTTGACCACTTTTTGATATCTTTTATAGAAATCGAGATAATTGATCTCAAAGTTAACAGTTTGAATAGGTTCATATAAAATTCTCACAAATTAGAATGGTCACTTAAAGCTTGGGGTACTGTAGTTGTGCAATAAAGCGGCTTAAACCCTGCCGCCGCTATTCCTCAAATAACAAACCGTCTACTTGATGATCAGAATCCAGGAAATTTGAATTAAATGTATCTGGATCCCTGTAAAAGATTTAACAATGATACTATCAACTGATAAAATATTGTTGGTATTATGATAAAAATTTTTGTTAGATTCGCAAAGGAATGTGTATGAAAATTGAATTTCCAACTAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>500 205 193 35 31 18 18</canonical_bands>
                <polymorphic_bands>518 205 193 35 31 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCTAATTGACATGGGACAC</pcr_primer_p1>
		<pcr_primer_p2>TACGATGGGCTTTTATCAGA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ATTTCTAATTGACATGGGACACTTGTCACATTTTTGACAAAGATGAAAAATATTGGCAGGAAAAGTATATTTGGATAGTTTGAGGACAGTGCAATGGGATCAGTGGTCAGTATGGGATTTAGAAAGATCAGAAGTTTGAAATTAAAATTTCTTAAAAATCACATCAAAACTAAAAAGCCAAAAAAGGTACTGTAGCTCGAAAAATATCATCGTATTTGCTCTGATAAAAGCCCATCGTA</canonical_amplicon>
		<polymorphic_amplicon>ATTTCTAATTGACATGGGACACTTGTCACATTTTTGACAAAGATGAAAAATATTGGCAGGAAAAGTATATTTGGATAGTTTGAGGACAGTGCAATGGGATCAGTGGTCAGTATGGGATTTAGAAAGATCAGAAGTTTGAAATTAAAATTTCTTAAAAATCACATCAAAACTAAAAARCCAAAAAAGGTACTGTAGCTCGAAAAATATCATCGTATTTGCTCTGATAAAAGCCCATCGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7872</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>282394</contig_pos>
        <strand>+</strand>
        <context>AAAAATATCA[C/T]CGTATTTGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACATCAAAACTAAAAAGCCAAAAAAGGTACTGTAGCTCGAAAAATATCA</left_flank>
        <right_flank>CGTATTTGCTCTGATAAAAGCCCATCGTATACTTTGAGCTCAATTATCTC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGACTGGAACGCCGGATGGTATGCTCCAGAAAACATCTGAAGAATTAATTGGAATTTAAATGCAAGATTCGGAAACCTACAGTAGTACAAAACTCATCATCAAGTTGCACCGCGTAGTTGTACATGACAGGACACCCGGATGGTGAATTCTTCAAATAACAATTGGAAGAAGAAGAGTAAAAATTTGGAAATTCAATTAGTCGGTCAAAATGGCGTCAGCAATGAAAAGTGAACAAAAGGACAACAATTTGGAGAAGTAGAAGAAGGAGGAGGGACATAAAAAAGTACACATTTCTAATTGACATGGGACACTTGTCACATTTTTGACAAAGATGAAAAATATTGGCAGGAAAAGTATATTTGGATAGTTTGAGGACAGTGCAATGGGATCAGTGGTCAGTATGGGATTTAGAAAGATCAGAAGTTTGAAATTAAAATTTCTTAAAAATCACATCAAAACTAAAAAGCCAAAAAAGGTACTGTAGCTCGAAAAATATCATCGTATTTGCTCTGATAAAAGCCCATCGTATACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAATTTTGCCAACTAATAAAAGATTGGTGATATTTTGATAAACAATTTATCAGTTGACCACTTTTTGATATCTTTTATAGAAATCGAGATAATTGATCTCAAAGTTAACAGTTTGAATAGGTTCATATAAAATTCTCACAAATTAGAATGGTCACTTAAAGCTTGGGGTACTGTAGTTGTGCAATAAAGCGGCTTAAACCCTGCCGCCGCTATTCCTCAAATAACAAACCGTCTACTTGATGATCAGAATCCAGGAAATTTGAATTAAATGTATCTGGATCCCTGTAAAAGATTTAACAATGATACTATCAACTGATAAAATATTGTTGGTATTATGATAAAAATTTTTGTTAGATTCGCAAAGGAATGTGTATGAAAATTGAATTTCCAACTAAACCCACTAGAAATCAACTTTCTAGAATTTCTTTAA</canonical>
            <polymorphic>GGACTGGAACGCCGGATGGTATGCTCCAGAAAACATCTGAAGAATTAATTGGAATTTAAATGCAAGATTCGGAAACCTACAGTAGTACAAAACTCATCATCAAGTTGCACCGCGTAGTTGTACATGACAGGACACCCGGATGGTGAATTCTTCAAATAACAATTGGAAGAAGAAGAGTAAAAATTTGGAAATTCAATTAGTCGGTCAAAATGGCGTCAGCAATGAAAAGTGAACAAAAGGACAACAATTTGGAGAAGTAGAAGAAGGAGGAGGGACATAAAAAAGTACACATTTCTAATTGACATGGGACACTTGTCACATTTTTGACAAAGATGAAAAATATTGGCAGGAAAAGTATATTTGGATAGTTTGAGGACAGTGCAATGGGATCAGTGGTCAGTATGGGATTTAGAAAGATCAGAAGTTTGAAATTAAAATTTCTTAAAAATCACATCAAAACTAAAAAGCCAAAAAAGGTACTGTAGCTCGAAAAATATCAYCGTATTTGCTCTGATAAAAGCCCATCGTATACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAATTTTGCCAACTAATAAAAGATTGGTGATATTTTGATAAACAATTTATCAGTTGACCACTTTTTGATATCTTTTATAGAAATCGAGATAATTGATCTCAAAGTTAACAGTTTGAATAGGTTCATATAAAATTCTCACAAATTAGAATGGTCACTTAAAGCTTGGGGTACTGTAGTTGTGCAATAAAGCGGCTTAAACCCTGCCGCCGCTATTCCTCAAATAACAAACCGTCTACTTGATGATCAGAATCCAGGAAATTTGAATTAAATGTATCTGGATCCCTGTAAAAGATTTAACAATGATACTATCAACTGATAAAATATTGTTGGTATTATGATAAAAATTTTTGTTAGATTCGCAAAGGAATGTGTATGAAAATTGAATTTCCAACTAAACCCACTAGAAATCAACTTTCTAGAATTTCTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTAAAAATCACATCAAAACTAAA</pcr_primer_p1>
		<pcr_primer_p2>TGTGAGAATTTTATATGAACCTATTC</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>TCTTAAAAATCACATCAAAACTAAAAAGCCAAAAAAGGTACTGTAGCTCGAAAAATATCATCGTATTTGCTCTGATAAAAGCCCATCGTATACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAATTTTGCCAACTAATAAAAGATTGGTGATATTTTGATAAACAATTTATCAGTTGACCACTTTTTGATATCTTTTATAGAAATCGAGATAATTGATCTCAAAGTTAACAGTTTGAATAGGTTCATATAAAATTCTCACA</canonical_amplicon>
		<polymorphic_amplicon>TCTTAAAAATCACATCAAAACTAAAAAGCCAAAAAAGGTACTGTAGCTCGAAAAATATCAYCGTATTTGCTCTGATAAAAGCCCATCGTATACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAATTTTGCCAACTAATAAAAGATTGGTGATATTTTGATAAACAATTTATCAGTTGACCACTTTTTGATATCTTTTATAGAAATCGAGATAATTGATCTCAAAGTTAACAGTTTGAATAGGTTCATATAAAATTCTCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7873</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>282605</contig_pos>
        <strand>+</strand>
        <context>AATTCTCACA[A/T]ATTAGAATGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTGATCTCAAAGTTAACAGTTTGAATAGGTTCATATAAAATTCTCACA</left_flank>
        <right_flank>ATTAGAATGGTCACTTAAAGCTTGGGGTACTGTAGTTGTGCAATAAAGCG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCGTCAGCAATGAAAAGTGAACAAAAGGACAACAATTTGGAGAAGTAGAAGAAGGAGGAGGGACATAAAAAAGTACACATTTCTAATTGACATGGGACACTTGTCACATTTTTGACAAAGATGAAAAATATTGGCAGGAAAAGTATATTTGGATAGTTTGAGGACAGTGCAATGGGATCAGTGGTCAGTATGGGATTTAGAAAGATCAGAAGTTTGAAATTAAAATTTCTTAAAAATCACATCAAAACTAAAAAGCCAAAAAAGGTACTGTAGCTCGAAAAATATCATCGTATTTGCTCTGATAAAAGCCCATCGTATACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAATTTTGCCAACTAATAAAAGATTGGTGATATTTTGATAAACAATTTATCAGTTGACCACTTTTTGATATCTTTTATAGAAATCGAGATAATTGATCTCAAAGTTAACAGTTTGAATAGGTTCATATAAAATTCTCACAAATTAGAATGGTCACTTAAAGCTTGGGGTACTGTAGTTGTGCAATAAAGCGGCTTAAACCCTGCCGCCGCTATTCCTCAAATAACAAACCGTCTACTTGATGATCAGAATCCAGGAAATTTGAATTAAATGTATCTGGATCCCTGTAAAAGATTTAACAATGATACTATCAACTGATAAAATATTGTTGGTATTATGATAAAAATTTTTGTTAGATTCGCAAAGGAATGTGTATGAAAATTGAATTTCCAACTAAACCCACTAGAAATCAACTTTCTAGAATTTCTTTAACTAACCGAAAAACTTCAAACAAGCGTAACTCGGCTCACAATGGGCGTAGAGAGCGGTTTTTAGCGAATTTTTAAGGAAATTTTGTGCATTATCTTTTGGGAAAACTTGCAAAAAAAAAATTTGGCTCGTAAAAACATAGTTTGCTATAGTTGAAATTATAGTTGAAATAGTTGAATATAGTTGGAATAGTTGAAATTACAAAGATAAATGA</canonical>
            <polymorphic>GGCGTCAGCAATGAAAAGTGAACAAAAGGACAACAATTTGGAGAAGTAGAAGAAGGAGGAGGGACATAAAAAAGTACACATTTCTAATTGACATGGGACACTTGTCACATTTTTGACAAAGATGAAAAATATTGGCAGGAAAAGTATATTTGGATAGTTTGAGGACAGTGCAATGGGATCAGTGGTCAGTATGGGATTTAGAAAGATCAGAAGTTTGAAATTAAAATTTCTTAAAAATCACATCAAAACTAAAAAGCCAAAAAAGGTACTGTAGCTCGAAAAATATCATCGTATTTGCTCTGATAAAAGCCCATCGTATACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAATTTTGCCAACTAATAAAAGATTGGTGATATTTTGATAAACAATTTATCAGTTGACCACTTTTTGATATCTTTTATAGAAATCGAGATAATTGATCTCAAAGTTAACAGTTTGAATAGGTTCATATAAAATTCTCACAWATTAGAATGGTCACTTAAAGCTTGGGGTACTGTAGTTGTGCAATAAAGCGGCTTAAACCCTGCCGCCGCTATTCCTCAAATAACAAACCGTCTACTTGATGATCAGAATCCAGGAAATTTGAATTAAATGTATCTGGATCCCTGTAAAAGATTTAACAATGATACTATCAACTGATAAAATATTGTTGGTATTATGATAAAAATTTTTGTTAGATTCGCAAAGGAATGTGTATGAAAATTGAATTTCCAACTAAACCCACTAGAAATCAACTTTCTAGAATTTCTTTAACTAACCGAAAAACTTCAAACAAGCGTAACTCGGCTCACAATGGGCGTAGAGAGCGGTTTTTAGCGAATTTTTAAGGAAATTTTGTGCATTATCTTTTGGGAAAACTTGCAAAAAAAAAATTTGGCTCGTAAAAACATAGTTTGCTATAGTTGAAATTATAGTTGAAATAGTTGAATATAGTTGGAATAGTTGAAATTACAAAGATAAATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>133 116 106 80 76 51 47 42 40 40 40 37 36 35 34 30 18 12 10 6 6 5</canonical_bands>
                <polymorphic_bands>133 126 106 80 76 51 47 42 40 40 40 37 36 35 34 30 18 12 6 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGATAAAAGCCCATCGTAT</pcr_primer_p1>
		<pcr_primer_p2>CCGCTTTATTGCACAACTAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTGATAAAAGCCCATCGTATACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAATTTTGCCAACTAATAAAAGATTGGTGATATTTTGATAAACAATTTATCAGTTGACCACTTTTTGATATCTTTTATAGAAATCGAGATAATTGATCTCAAAGTTAACAGTTTGAATAGGTTCATATAAAATTCTCACAAATTAGAATGGTCACTTAAAGCTTGGGGTACTGTAGTTGTGCAATAAAGCGG</canonical_amplicon>
		<polymorphic_amplicon>CTGATAAAAGCCCATCGTATACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAATTTTGCCAACTAATAAAAGATTGGTGATATTTTGATAAACAATTTATCAGTTGACCACTTTTTGATATCTTTTATAGAAATCGAGATAATTGATCTCAAAGTTAACAGTTTGAATAGGTTCATATAAAATTCTCACAWATTAGAATGGTCACTTAAAGCTTGGGGTACTGTAGTTGTGCAATAAAGCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7874</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>282616</contig_pos>
        <strand>+</strand>
        <context>ATTAGAATGG[C/T]CACTTAAAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGTTAACAGTTTGAATAGGTTCATATAAAATTCTCACAAATTAGAATGG</left_flank>
        <right_flank>CACTTAAAGCTTGGGGTACTGTAGTTGTGCAATAAAGCGGCTTAAACCCT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAAAGTGAACAAAAGGACAACAATTTGGAGAAGTAGAAGAAGGAGGAGGGACATAAAAAAGTACACATTTCTAATTGACATGGGACACTTGTCACATTTTTGACAAAGATGAAAAATATTGGCAGGAAAAGTATATTTGGATAGTTTGAGGACAGTGCAATGGGATCAGTGGTCAGTATGGGATTTAGAAAGATCAGAAGTTTGAAATTAAAATTTCTTAAAAATCACATCAAAACTAAAAAGCCAAAAAAGGTACTGTAGCTCGAAAAATATCATCGTATTTGCTCTGATAAAAGCCCATCGTATACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAATTTTGCCAACTAATAAAAGATTGGTGATATTTTGATAAACAATTTATCAGTTGACCACTTTTTGATATCTTTTATAGAAATCGAGATAATTGATCTCAAAGTTAACAGTTTGAATAGGTTCATATAAAATTCTCACAAATTAGAATGGTCACTTAAAGCTTGGGGTACTGTAGTTGTGCAATAAAGCGGCTTAAACCCTGCCGCCGCTATTCCTCAAATAACAAACCGTCTACTTGATGATCAGAATCCAGGAAATTTGAATTAAATGTATCTGGATCCCTGTAAAAGATTTAACAATGATACTATCAACTGATAAAATATTGTTGGTATTATGATAAAAATTTTTGTTAGATTCGCAAAGGAATGTGTATGAAAATTGAATTTCCAACTAAACCCACTAGAAATCAACTTTCTAGAATTTCTTTAACTAACCGAAAAACTTCAAACAAGCGTAACTCGGCTCACAATGGGCGTAGAGAGCGGTTTTTAGCGAATTTTTAAGGAAATTTTGTGCATTATCTTTTGGGAAAACTTGCAAAAAAAAAATTTGGCTCGTAAAAACATAGTTTGCTATAGTTGAAATTATAGTTGAAATAGTTGAATATAGTTGGAATAGTTGAAATTACAAAGATAAATGAGCTCAAACTAG</canonical>
            <polymorphic>TGAAAAGTGAACAAAAGGACAACAATTTGGAGAAGTAGAAGAAGGAGGAGGGACATAAAAAAGTACACATTTCTAATTGACATGGGACACTTGTCACATTTTTGACAAAGATGAAAAATATTGGCAGGAAAAGTATATTTGGATAGTTTGAGGACAGTGCAATGGGATCAGTGGTCAGTATGGGATTTAGAAAGATCAGAAGTTTGAAATTAAAATTTCTTAAAAATCACATCAAAACTAAAAAGCCAAAAAAGGTACTGTAGCTCGAAAAATATCATCGTATTTGCTCTGATAAAAGCCCATCGTATACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAATTTTGCCAACTAATAAAAGATTGGTGATATTTTGATAAACAATTTATCAGTTGACCACTTTTTGATATCTTTTATAGAAATCGAGATAATTGATCTCAAAGTTAACAGTTTGAATAGGTTCATATAAAATTCTCACAAATTAGAATGGYCACTTAAAGCTTGGGGTACTGTAGTTGTGCAATAAAGCGGCTTAAACCCTGCCGCCGCTATTCCTCAAATAACAAACCGTCTACTTGATGATCAGAATCCAGGAAATTTGAATTAAATGTATCTGGATCCCTGTAAAAGATTTAACAATGATACTATCAACTGATAAAATATTGTTGGTATTATGATAAAAATTTTTGTTAGATTCGCAAAGGAATGTGTATGAAAATTGAATTTCCAACTAAACCCACTAGAAATCAACTTTCTAGAATTTCTTTAACTAACCGAAAAACTTCAAACAAGCGTAACTCGGCTCACAATGGGCGTAGAGAGCGGTTTTTAGCGAATTTTTAAGGAAATTTTGTGCATTATCTTTTGGGAAAACTTGCAAAAAAAAAATTTGGCTCGTAAAAACATAGTTTGCTATAGTTGAAATTATAGTTGAAATAGTTGAATATAGTTGGAATAGTTGAAATTACAAAGATAAATGAGCTCAAACTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>406 304 198 92</canonical_bands>
                <polymorphic_bands>710 198 92</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>502 406 92</canonical_bands>
                <polymorphic_bands>908 92</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGATAAAAGCCCATCGTAT</pcr_primer_p1>
		<pcr_primer_p2>GGTTTGTTATTTGAGGAATAGC</pcr_primer_p2>
		<pcr_amplicon_size>290</pcr_amplicon_size>
		<canonical_amplicon>CTGATAAAAGCCCATCGTATACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAATTTTGCCAACTAATAAAAGATTGGTGATATTTTGATAAACAATTTATCAGTTGACCACTTTTTGATATCTTTTATAGAAATCGAGATAATTGATCTCAAAGTTAACAGTTTGAATAGGTTCATATAAAATTCTCACAAATTAGAATGGTCACTTAAAGCTTGGGGTACTGTAGTTGTGCAATAAAGCGGCTTAAACCCTGCCGCCGCTATTCCTCAAATAACAAACC</canonical_amplicon>
		<polymorphic_amplicon>CTGATAAAAGCCCATCGTATACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAATTTTGCCAACTAATAAAAGATTGGTGATATTTTGATAAACAATTTATCAGTTGACCACTTTTTGATATCTTTTATAGAAATCGAGATAATTGATCTCAAAGTTAACAGTTTGAATAGGTTCATATAAAATTCTCACAAATTAGAATGGYCACTTAAAGCTTGGGGTACTGTAGTTGTGCAATAAAGCGGCTTAAACCCTGCCGCCGCTATTCCTCAAATAACAAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7875</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>284693</contig_pos>
        <strand>+</strand>
        <context>TTTCAAGGAT[A/T]ATGTGCGTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGAGCTAGAAGAAATTTGAACTGAAATGCCTTGAGAATTTTTCAAGGAT</left_flank>
        <right_flank>ATGTGCGTCATTGAAAATTGGACTGTGATTGGAAAAGGTGAGAAAAGCTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCAACCAATCCCTTGGCTGTAACTTCTGATGTCAATGACTTTGTACTTTTAAACTGGGACTACAGTAAGAAGAGACCCAGAATTTCAGGAGGGTAAAAATCCAAACATTTGGAAGCACCCAAAGCTCAAAAACCTTTTCAAATCCAGAAAATTCCAAATTAATTCTGCCTTTGAAAATTCGAAAATTTTATGGTCAGCCGTAAATTTAAATGGTTTACCTCAACTAAGCCAGCCGTAAATCTACCGTAATCTTTGTCTAAAAAAAATAAAAAACCAAGAATGAATCAAAATTTCAAAGAAAAAACATGCAAATCGGTATCTATTTTTGCTTTACTTCTTTTTCTCTCTAATTAAAGCCTTCTAGGTGATGTGACAAATATCACTTGTAGTTTTGAGAGTGTAGAGATTACAATGCTTTGAAATTCATTTTTCAAAACTTTTGATTCTTTGAGCTAGAAGAAATTTGAACTGAAATGCCTTGAGAATTTTTCAAGGATAATGTGCGTCATTGAAAATTGGACTGTGATTGGAAAAGGTGAGAAAAGCTTGAGTTTTGAATCGAAAGTCTGGATTTAGAAACGTGAGGAATCATTTTCAGTCAGAAAAGTTCGAAGTGGGCGGAGCCTAGTTGGTATCGTGGAACCTGGAAACCTTGGTGGTGTTTTTAACCTGGAAACTTTTGTTGGTGTTCGGCCAACTTTTGCTCCTAGTGGCCTAGAAATTGGTTCTAGGTCAACGAGAGTTATTCAAATGTCCTGTCATATGAATGGATTCAAAATGAGCCTAACACGACTAGGCCCCGCGCACTTCAGTATTCCAGGTGCGTCGCGGTCGTGCGTCGCGTGCCACTTGAAAAATTAAAAATGGGCGGAGCCTAGTCGTGTCTAGGTTCATTTTGAAGCGCTTTTTACGACAAATACAGTAGTATAGTATATCATAAGCTTAAAAGGCATTTCTAGGAGATCAGGAGTATAACTTCTGCCACCAAGGAATTTGGG</canonical>
            <polymorphic>CATCAACCAATCCCTTGGCTGTAACTTCTGATGTCAATGACTTTGTACTTTTAAACTGGGACTACAGTAAGAAGAGACCCAGAATTTCAGGAGGGTAAAAATCCAAACATTTGGAAGCACCCAAAGCTCAAAAACCTTTTCAAATCCAGAAAATTCCAAATTAATTCTGCCTTTGAAAATTCGAAAATTTTATGGTCAGCCGTAAATTTAAATGGTTTACCTCAACTAAGCCAGCCGTAAATCTACCGTAATCTTTGTCTAAAAAAAATAAAAAACCAAGAATGAATCAAAATTTCAAAGAAAAAACATGCAAATCGGTATCTATTTTTGCTTTACTTCTTTTTCTCTCTAATTAAAGCCTTCTAGGTGATGTGACAAATATCACTTGTAGTTTTGAGAGTGTAGAGATTACAATGCTTTGAAATTCATTTTTCAAAACTTTTGATTCTTTGAGCTAGAAGAAATTTGAACTGAAATGCCTTGAGAATTTTTCAAGGATWATGTGCGTCATTGAAAATTGGACTGTGATTGGAAAAGGTGAGAAAAGCTTGAGTTTTGAATCGAAAGTCTGGATTTAGAAACGTGAGGAATCATTTTCAGTCAGAAAAGTTCGAAGTGGGCGGAGCCTAGTTGGTATCGTGGAACCTGGAAACCTTGGTGGTGTTTTTAACCTGGAAACTTTTGTTGGTGTTCGGCCAACTTTTGCTCCTAGTGGCCTAGAAATTGGTTCTAGGTCAACGAGAGTTATTCAAATGTCCTGTCATATGAATGGATTCAAAATGAGCCTAACACGACTAGGCCCCGCGCACTTCAGTATTCCAGGTGCGTCGCGGTCGTGCGTCGCGTGCCACTTGAAAAATTAAAAATGGGCGGAGCCTAGTCGTGTCTAGGTTCATTTTGAAGCGCTTTTTACGACAAATACAGTAGTATAGTATATCATAAGCTTAAAAGGCATTTCTAGGAGATCAGGAGTATAACTTCTGCCACCAAGGAATTTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTTTTGATTCTTTGAGCTA</pcr_primer_p1>
		<pcr_primer_p2>AAAAGTTTCCAGGTTAAAAACAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAACTTTTGATTCTTTGAGCTAGAAGAAATTTGAACTGAAATGCCTTGAGAATTTTTCAAGGATAATGTGCGTCATTGAAAATTGGACTGTGATTGGAAAAGGTGAGAAAAGCTTGAGTTTTGAATCGAAAGTCTGGATTTAGAAACGTGAGGAATCATTTTCAGTCAGAAAAGTTCGAAGTGGGCGGAGCCTAGTTGGTATCGTGGAACCTGGAAACCTTGGTGGTGTTTTTAACCTGGAAACTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAACTTTTGATTCTTTGAGCTAGAAGAAATTTGAACTGAAATGCCTTGAGAATTTTTCAAGGATWATGTGCGTCATTGAAAATTGGACTGTGATTGGAAAAGGTGAGAAAAGCTTGAGTTTTGAATCGAAAGTCTGGATTTAGAAACGTGAGGAATCATTTTCAGTCAGAAAAGTTCGAAGTGGGCGGAGCCTAGTTGGTATCGTGGAACCTGGAAACCTTGGTGGTGTTTTTAACCTGGAAACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7876</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>284621</contig_pos>
        <strand>+</strand>
        <context>TTTGAAATTC[A/T]TTTTTCAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATATCACTTGTAGTTTTGAGAGTGTAGAGATTACAATGCTTTGAAATTC</left_flank>
        <right_flank>TTTTTCAAAACTTTTGATTCTTTGAGCTAGAAGAAATTTGAACTGAAATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTATTTTGATGACTGTGACTAGAATCTAGATTTCCAAAAAAAATAGTGATGTAATTACTCAAATAAAAGTACATCAACCAATCCCTTGGCTGTAACTTCTGATGTCAATGACTTTGTACTTTTAAACTGGGACTACAGTAAGAAGAGACCCAGAATTTCAGGAGGGTAAAAATCCAAACATTTGGAAGCACCCAAAGCTCAAAAACCTTTTCAAATCCAGAAAATTCCAAATTAATTCTGCCTTTGAAAATTCGAAAATTTTATGGTCAGCCGTAAATTTAAATGGTTTACCTCAACTAAGCCAGCCGTAAATCTACCGTAATCTTTGTCTAAAAAAAATAAAAAACCAAGAATGAATCAAAATTTCAAAGAAAAAACATGCAAATCGGTATCTATTTTTGCTTTACTTCTTTTTCTCTCTAATTAAAGCCTTCTAGGTGATGTGACAAATATCACTTGTAGTTTTGAGAGTGTAGAGATTACAATGCTTTGAAATTCATTTTTCAAAACTTTTGATTCTTTGAGCTAGAAGAAATTTGAACTGAAATGCCTTGAGAATTTTTCAAGGATAATGTGCGTCATTGAAAATTGGACTGTGATTGGAAAAGGTGAGAAAAGCTTGAGTTTTGAATCGAAAGTCTGGATTTAGAAACGTGAGGAATCATTTTCAGTCAGAAAAGTTCGAAGTGGGCGGAGCCTAGTTGGTATCGTGGAACCTGGAAACCTTGGTGGTGTTTTTAACCTGGAAACTTTTGTTGGTGTTCGGCCAACTTTTGCTCCTAGTGGCCTAGAAATTGGTTCTAGGTCAACGAGAGTTATTCAAATGTCCTGTCATATGAATGGATTCAAAATGAGCCTAACACGACTAGGCCCCGCGCACTTCAGTATTCCAGGTGCGTCGCGGTCGTGCGTCGCGTGCCACTTGAAAAATTAAAAATGGGCGGAGCCTAGTCGTGTCTAGGTTCATTTTGAAGCGCTTTTTACGACAAATACAGTAGT</canonical>
            <polymorphic>ACTATTTTGATGACTGTGACTAGAATCTAGATTTCCAAAAAAAATAGTGATGTAATTACTCAAATAAAAGTACATCAACCAATCCCTTGGCTGTAACTTCTGATGTCAATGACTTTGTACTTTTAAACTGGGACTACAGTAAGAAGAGACCCAGAATTTCAGGAGGGTAAAAATCCAAACATTTGGAAGCACCCAAAGCTCAAAAACCTTTTCAAATCCAGAAAATTCCAAATTAATTCTGCCTTTGAAAATTCGAAAATTTTATGGTCAGCCGTAAATTTAAATGGTTTACCTCAACTAAGCCAGCCGTAAATCTACCGTAATCTTTGTCTAAAAAAAATAAAAAACCAAGAATGAATCAAAATTTCAAAGAAAAAACATGCAAATCGGTATCTATTTTTGCTTTACTTCTTTTTCTCTCTAATTAAAGCCTTCTAGGTGATGTGACAAATATCACTTGTAGTTTTGAGAGTGTAGAGATTACAATGCTTTGAAATTCWTTTTTCAAAACTTTTGATTCTTTGAGCTAGAAGAAATTTGAACTGAAATGCCTTGAGAATTTTTCAAGGATAATGTGCGTCATTGAAAATTGGACTGTGATTGGAAAAGGTGAGAAAAGCTTGAGTTTTGAATCGAAAGTCTGGATTTAGAAACGTGAGGAATCATTTTCAGTCAGAAAAGTTCGAAGTGGGCGGAGCCTAGTTGGTATCGTGGAACCTGGAAACCTTGGTGGTGTTTTTAACCTGGAAACTTTTGTTGGTGTTCGGCCAACTTTTGCTCCTAGTGGCCTAGAAATTGGTTCTAGGTCAACGAGAGTTATTCAAATGTCCTGTCATATGAATGGATTCAAAATGAGCCTAACACGACTAGGCCCCGCGCACTTCAGTATTCCAGGTGCGTCGCGGTCGTGCGTCGCGTGCCACTTGAAAAATTAAAAATGGGCGGAGCCTAGTCGTGTCTAGGTTCATTTTGAAGCGCTTTTTACGACAAATACAGTAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAATTAAAGCCTTCTAGGTGA</pcr_primer_p1>
		<pcr_primer_p2>AATGATTCCTCACGTTTCTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTAATTAAAGCCTTCTAGGTGATGTGACAAATATCACTTGTAGTTTTGAGAGTGTAGAGATTACAATGCTTTGAAATTCATTTTTCAAAACTTTTGATTCTTTGAGCTAGAAGAAATTTGAACTGAAATGCCTTGAGAATTTTTCAAGGATAATGTGCGTCATTGAAAATTGGACTGTGATTGGAAAAGGTGAGAAAAGCTTGAGTTTTGAATCGAAAGTCTGGATTTAGAAACGTGAGGAATCATT</canonical_amplicon>
		<polymorphic_amplicon>TCTAATTAAAGCCTTCTAGGTGATGTGACAAATATCACTTGTAGTTTTGAGAGTGTAGAGATTACAATGCTTTGAAATTCWTTTTTCAAAACTTTTGATTCTTTGAGCTAGAAGAAATTTGAACTGAAATGCCTTGAGAATTTTTCAAGGATAATGTGCGTCATTGAAAATTGGACTGTGATTGGAAAAGGTGAGAAAAGCTTGAGTTTTGAATCGAAAGTCTGGATTTAGAAACGTGAGGAATCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7877</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>284602</contig_pos>
        <strand>+</strand>
        <context>AGTGTAGAGA[C/T]TACAATGCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTTCTAGGTGATGTGACAAATATCACTTGTAGTTTTGAGAGTGTAGAGA</left_flank>
        <right_flank>TACAATGCTTTGAAATTCATTTTTCAAAACTTTTGATTCTTTGAGCTAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATAATTAAAATTACTCACTATTTTGATGACTGTGACTAGAATCTAGATTTCCAAAAAAAATAGTGATGTAATTACTCAAATAAAAGTACATCAACCAATCCCTTGGCTGTAACTTCTGATGTCAATGACTTTGTACTTTTAAACTGGGACTACAGTAAGAAGAGACCCAGAATTTCAGGAGGGTAAAAATCCAAACATTTGGAAGCACCCAAAGCTCAAAAACCTTTTCAAATCCAGAAAATTCCAAATTAATTCTGCCTTTGAAAATTCGAAAATTTTATGGTCAGCCGTAAATTTAAATGGTTTACCTCAACTAAGCCAGCCGTAAATCTACCGTAATCTTTGTCTAAAAAAAATAAAAAACCAAGAATGAATCAAAATTTCAAAGAAAAAACATGCAAATCGGTATCTATTTTTGCTTTACTTCTTTTTCTCTCTAATTAAAGCCTTCTAGGTGATGTGACAAATATCACTTGTAGTTTTGAGAGTGTAGAGATTACAATGCTTTGAAATTCATTTTTCAAAACTTTTGATTCTTTGAGCTAGAAGAAATTTGAACTGAAATGCCTTGAGAATTTTTCAAGGATAATGTGCGTCATTGAAAATTGGACTGTGATTGGAAAAGGTGAGAAAAGCTTGAGTTTTGAATCGAAAGTCTGGATTTAGAAACGTGAGGAATCATTTTCAGTCAGAAAAGTTCGAAGTGGGCGGAGCCTAGTTGGTATCGTGGAACCTGGAAACCTTGGTGGTGTTTTTAACCTGGAAACTTTTGTTGGTGTTCGGCCAACTTTTGCTCCTAGTGGCCTAGAAATTGGTTCTAGGTCAACGAGAGTTATTCAAATGTCCTGTCATATGAATGGATTCAAAATGAGCCTAACACGACTAGGCCCCGCGCACTTCAGTATTCCAGGTGCGTCGCGGTCGTGCGTCGCGTGCCACTTGAAAAATTAAAAATGGGCGGAGCCTAGTCGTGTCTAGGTTCATTTTGAAGCGCTTT</canonical>
            <polymorphic>ATTATAATTAAAATTACTCACTATTTTGATGACTGTGACTAGAATCTAGATTTCCAAAAAAAATAGTGATGTAATTACTCAAATAAAAGTACATCAACCAATCCCTTGGCTGTAACTTCTGATGTCAATGACTTTGTACTTTTAAACTGGGACTACAGTAAGAAGAGACCCAGAATTTCAGGAGGGTAAAAATCCAAACATTTGGAAGCACCCAAAGCTCAAAAACCTTTTCAAATCCAGAAAATTCCAAATTAATTCTGCCTTTGAAAATTCGAAAATTTTATGGTCAGCCGTAAATTTAAATGGTTTACCTCAACTAAGCCAGCCGTAAATCTACCGTAATCTTTGTCTAAAAAAAATAAAAAACCAAGAATGAATCAAAATTTCAAAGAAAAAACATGCAAATCGGTATCTATTTTTGCTTTACTTCTTTTTCTCTCTAATTAAAGCCTTCTAGGTGATGTGACAAATATCACTTGTAGTTTTGAGAGTGTAGAGAYTACAATGCTTTGAAATTCATTTTTCAAAACTTTTGATTCTTTGAGCTAGAAGAAATTTGAACTGAAATGCCTTGAGAATTTTTCAAGGATAATGTGCGTCATTGAAAATTGGACTGTGATTGGAAAAGGTGAGAAAAGCTTGAGTTTTGAATCGAAAGTCTGGATTTAGAAACGTGAGGAATCATTTTCAGTCAGAAAAGTTCGAAGTGGGCGGAGCCTAGTTGGTATCGTGGAACCTGGAAACCTTGGTGGTGTTTTTAACCTGGAAACTTTTGTTGGTGTTCGGCCAACTTTTGCTCCTAGTGGCCTAGAAATTGGTTCTAGGTCAACGAGAGTTATTCAAATGTCCTGTCATATGAATGGATTCAAAATGAGCCTAACACGACTAGGCCCCGCGCACTTCAGTATTCCAGGTGCGTCGCGGTCGTGCGTCGCGTGCCACTTGAAAAATTAAAAATGGGCGGAGCCTAGTCGTGTCTAGGTTCATTTTGAAGCGCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAATTAAAGCCTTCTAGGTGA</pcr_primer_p1>
		<pcr_primer_p2>AATGATTCCTCACGTTTCTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTAATTAAAGCCTTCTAGGTGATGTGACAAATATCACTTGTAGTTTTGAGAGTGTAGAGATTACAATGCTTTGAAATTCATTTTTCAAAACTTTTGATTCTTTGAGCTAGAAGAAATTTGAACTGAAATGCCTTGAGAATTTTTCAAGGATAATGTGCGTCATTGAAAATTGGACTGTGATTGGAAAAGGTGAGAAAAGCTTGAGTTTTGAATCGAAAGTCTGGATTTAGAAACGTGAGGAATCATT</canonical_amplicon>
		<polymorphic_amplicon>TCTAATTAAAGCCTTCTAGGTGATGTGACAAATATCACTTGTAGTTTTGAGAGTGTAGAGAYTACAATGCTTTGAAATTCATTTTTCAAAACTTTTGATTCTTTGAGCTAGAAGAAATTTGAACTGAAATGCCTTGAGAATTTTTCAAGGATAATGTGCGTCATTGAAAATTGGACTGTGATTGGAAAAGGTGAGAAAAGCTTGAGTTTTGAATCGAAAGTCTGGATTTAGAAACGTGAGGAATCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7878</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>284525</contig_pos>
        <strand>+</strand>
        <context>CTATTTTTGC[A/T]TTACTTCTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGAATCAAAATTTCAAAGAAAAAACATGCAAATCGGTATCTATTTTTGC</left_flank>
        <right_flank>TTACTTCTTTTTCTCTCTAATTAAAGCCTTCTAGGTGATGTGACAAATAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGAGTTTTCGGTAATTTTTGCCTCTAGATTTGAAATCAGCAAACGTGCCTATAGCAAAAAAACCCTTATCCAATCATTATAATTAAAATTACTCACTATTTTGATGACTGTGACTAGAATCTAGATTTCCAAAAAAAATAGTGATGTAATTACTCAAATAAAAGTACATCAACCAATCCCTTGGCTGTAACTTCTGATGTCAATGACTTTGTACTTTTAAACTGGGACTACAGTAAGAAGAGACCCAGAATTTCAGGAGGGTAAAAATCCAAACATTTGGAAGCACCCAAAGCTCAAAAACCTTTTCAAATCCAGAAAATTCCAAATTAATTCTGCCTTTGAAAATTCGAAAATTTTATGGTCAGCCGTAAATTTAAATGGTTTACCTCAACTAAGCCAGCCGTAAATCTACCGTAATCTTTGTCTAAAAAAAATAAAAAACCAAGAATGAATCAAAATTTCAAAGAAAAAACATGCAAATCGGTATCTATTTTTGCTTTACTTCTTTTTCTCTCTAATTAAAGCCTTCTAGGTGATGTGACAAATATCACTTGTAGTTTTGAGAGTGTAGAGATTACAATGCTTTGAAATTCATTTTTCAAAACTTTTGATTCTTTGAGCTAGAAGAAATTTGAACTGAAATGCCTTGAGAATTTTTCAAGGATAATGTGCGTCATTGAAAATTGGACTGTGATTGGAAAAGGTGAGAAAAGCTTGAGTTTTGAATCGAAAGTCTGGATTTAGAAACGTGAGGAATCATTTTCAGTCAGAAAAGTTCGAAGTGGGCGGAGCCTAGTTGGTATCGTGGAACCTGGAAACCTTGGTGGTGTTTTTAACCTGGAAACTTTTGTTGGTGTTCGGCCAACTTTTGCTCCTAGTGGCCTAGAAATTGGTTCTAGGTCAACGAGAGTTATTCAAATGTCCTGTCATATGAATGGATTCAAAATGAGCCTAACACGACTAGGCCCCGCGCACTTCAGTATTCCAGGTGCGTCGCG</canonical>
            <polymorphic>ACAGAGTTTTCGGTAATTTTTGCCTCTAGATTTGAAATCAGCAAACGTGCCTATAGCAAAAAAACCCTTATCCAATCATTATAATTAAAATTACTCACTATTTTGATGACTGTGACTAGAATCTAGATTTCCAAAAAAAATAGTGATGTAATTACTCAAATAAAAGTACATCAACCAATCCCTTGGCTGTAACTTCTGATGTCAATGACTTTGTACTTTTAAACTGGGACTACAGTAAGAAGAGACCCAGAATTTCAGGAGGGTAAAAATCCAAACATTTGGAAGCACCCAAAGCTCAAAAACCTTTTCAAATCCAGAAAATTCCAAATTAATTCTGCCTTTGAAAATTCGAAAATTTTATGGTCAGCCGTAAATTTAAATGGTTTACCTCAACTAAGCCAGCCGTAAATCTACCGTAATCTTTGTCTAAAAAAAATAAAAAACCAAGAATGAATCAAAATTTCAAAGAAAAAACATGCAAATCGGTATCTATTTTTGCWTTACTTCTTTTTCTCTCTAATTAAAGCCTTCTAGGTGATGTGACAAATATCACTTGTAGTTTTGAGAGTGTAGAGATTACAATGCTTTGAAATTCATTTTTCAAAACTTTTGATTCTTTGAGCTAGAAGAAATTTGAACTGAAATGCCTTGAGAATTTTTCAAGGATAATGTGCGTCATTGAAAATTGGACTGTGATTGGAAAAGGTGAGAAAAGCTTGAGTTTTGAATCGAAAGTCTGGATTTAGAAACGTGAGGAATCATTTTCAGTCAGAAAAGTTCGAAGTGGGCGGAGCCTAGTTGGTATCGTGGAACCTGGAAACCTTGGTGGTGTTTTTAACCTGGAAACTTTTGTTGGTGTTCGGCCAACTTTTGCTCCTAGTGGCCTAGAAATTGGTTCTAGGTCAACGAGAGTTATTCAAATGTCCTGTCATATGAATGGATTCAAAATGAGCCTAACACGACTAGGCCCCGCGCACTTCAGTATTCCAGGTGCGTCGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATGGTTTACCTCAACTAAGC</pcr_primer_p1>
		<pcr_primer_p2>TCTAGCTCAAAGAATCAAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAAATGGTTTACCTCAACTAAGCCAGCCGTAAATCTACCGTAATCTTTGTCTAAAAAAAATAAAAAACCAAGAATGAATCAAAATTTCAAAGAAAAAACATGCAAATCGGTATCTATTTTTGCTTTACTTCTTTTTCTCTCTAATTAAAGCCTTCTAGGTGATGTGACAAATATCACTTGTAGTTTTGAGAGTGTAGAGATTACAATGCTTTGAAATTCATTTTTCAAAACTTTTGATTCTTTGAGCTAGA</canonical_amplicon>
		<polymorphic_amplicon>TAAATGGTTTACCTCAACTAAGCCAGCCGTAAATCTACCGTAATCTTTGTCTAAAAAAAATAAAAAACCAAGAATGAATCAAAATTTCAAAGAAAAAACATGCAAATCGGTATCTATTTTTGCWTTACTTCTTTTTCTCTCTAATTAAAGCCTTCTAGGTGATGTGACAAATATCACTTGTAGTTTTGAGAGTGTAGAGATTACAATGCTTTGAAATTCATTTTTCAAAACTTTTGATTCTTTGAGCTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7879</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>284400</contig_pos>
        <strand>+</strand>
        <context>CAGCCGTAAA[A/T]TTAAATGGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAATTAATTCTGCCTTTGAAAATTCGAAAATTTTATGGTCAGCCGTAAA</left_flank>
        <right_flank>TTAAATGGTTTACCTCAACTAAGCCAGCCGTAAATCTACCGTAATCTTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGGTAAATTGACAAAATATTTTTGATATTATGATTATCATTTTATCAGTTGGCCACTTTTTTTTCTATCTTTTACAGGAACCGAGATGTATGGGCTCAAACTTGACGGATTGGTTGGCCTTCTAACAGAGTTTTCGGTAATTTTTGCCTCTAGATTTGAAATCAGCAAACGTGCCTATAGCAAAAAAACCCTTATCCAATCATTATAATTAAAATTACTCACTATTTTGATGACTGTGACTAGAATCTAGATTTCCAAAAAAAATAGTGATGTAATTACTCAAATAAAAGTACATCAACCAATCCCTTGGCTGTAACTTCTGATGTCAATGACTTTGTACTTTTAAACTGGGACTACAGTAAGAAGAGACCCAGAATTTCAGGAGGGTAAAAATCCAAACATTTGGAAGCACCCAAAGCTCAAAAACCTTTTCAAATCCAGAAAATTCCAAATTAATTCTGCCTTTGAAAATTCGAAAATTTTATGGTCAGCCGTAAATTTAAATGGTTTACCTCAACTAAGCCAGCCGTAAATCTACCGTAATCTTTGTCTAAAAAAAATAAAAAACCAAGAATGAATCAAAATTTCAAAGAAAAAACATGCAAATCGGTATCTATTTTTGCTTTACTTCTTTTTCTCTCTAATTAAAGCCTTCTAGGTGATGTGACAAATATCACTTGTAGTTTTGAGAGTGTAGAGATTACAATGCTTTGAAATTCATTTTTCAAAACTTTTGATTCTTTGAGCTAGAAGAAATTTGAACTGAAATGCCTTGAGAATTTTTCAAGGATAATGTGCGTCATTGAAAATTGGACTGTGATTGGAAAAGGTGAGAAAAGCTTGAGTTTTGAATCGAAAGTCTGGATTTAGAAACGTGAGGAATCATTTTCAGTCAGAAAAGTTCGAAGTGGGCGGAGCCTAGTTGGTATCGTGGAACCTGGAAACCTTGGTGGTGTTTTTAACCTGGAAACTTTTGTTGGTGTTCGGCCAACTTTTGCT</canonical>
            <polymorphic>GTGGTAAATTGACAAAATATTTTTGATATTATGATTATCATTTTATCAGTTGGCCACTTTTTTTTCTATCTTTTACAGGAACCGAGATGTATGGGCTCAAACTTGACGGATTGGTTGGCCTTCTAACAGAGTTTTCGGTAATTTTTGCCTCTAGATTTGAAATCAGCAAACGTGCCTATAGCAAAAAAACCCTTATCCAATCATTATAATTAAAATTACTCACTATTTTGATGACTGTGACTAGAATCTAGATTTCCAAAAAAAATAGTGATGTAATTACTCAAATAAAAGTACATCAACCAATCCCTTGGCTGTAACTTCTGATGTCAATGACTTTGTACTTTTAAACTGGGACTACAGTAAGAAGAGACCCAGAATTTCAGGAGGGTAAAAATCCAAACATTTGGAAGCACCCAAAGCTCAAAAACCTTTTCAAATCCAGAAAATTCCAAATTAATTCTGCCTTTGAAAATTCGAAAATTTTATGGTCAGCCGTAAAWTTAAATGGTTTACCTCAACTAAGCCAGCCGTAAATCTACCGTAATCTTTGTCTAAAAAAAATAAAAAACCAAGAATGAATCAAAATTTCAAAGAAAAAACATGCAAATCGGTATCTATTTTTGCTTTACTTCTTTTTCTCTCTAATTAAAGCCTTCTAGGTGATGTGACAAATATCACTTGTAGTTTTGAGAGTGTAGAGATTACAATGCTTTGAAATTCATTTTTCAAAACTTTTGATTCTTTGAGCTAGAAGAAATTTGAACTGAAATGCCTTGAGAATTTTTCAAGGATAATGTGCGTCATTGAAAATTGGACTGTGATTGGAAAAGGTGAGAAAAGCTTGAGTTTTGAATCGAAAGTCTGGATTTAGAAACGTGAGGAATCATTTTCAGTCAGAAAAGTTCGAAGTGGGCGGAGCCTAGTTGGTATCGTGGAACCTGGAAACCTTGGTGGTGTTTTTAACCTGGAAACTTTTGTTGGTGTTCGGCCAACTTTTGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>375 222 132 86 69 40 26 23 19 8</canonical_bands>
                <polymorphic_bands>375 222 132 105 69 40 26 23 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>498 345 157</canonical_bands>
                <polymorphic_bands>655 345</polymorphic_bands>
            </assay>
            <assay>
                <site>ATTTAAAT</site>
                <isoschizomers>
                    <enzyme>SmiI</enzyme>
                    <enzyme>SwaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>192 133 101 86 72 69 68 61 60 40 30 23 19 15 8 7 6 6 4</canonical_bands>
                <polymorphic_bands>192 133 105 101 72 69 68 61 60 40 30 23 15 8 7 6 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACCTTTTCAAATCCAGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGATATTTGTCACATCACCTAGA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AACCTTTTCAAATCCAGAAAATTCCAAATTAATTCTGCCTTTGAAAATTCGAAAATTTTATGGTCAGCCGTAAATTTAAATGGTTTACCTCAACTAAGCCAGCCGTAAATCTACCGTAATCTTTGTCTAAAAAAAATAAAAAACCAAGAATGAATCAAAATTTCAAAGAAAAAACATGCAAATCGGTATCTATTTTTGCTTTACTTCTTTTTCTCTCTAATTAAAGCCTTCTAGGTGATGTGACAAATATCA</canonical_amplicon>
		<polymorphic_amplicon>AACCTTTTCAAATCCAGAAAATTCCAAATTAATTCTGCCTTTGAAAATTCGAAAATTTTATGGTCAGCCGTAAAWTTAAATGGTTTACCTCAACTAAGCCAGCCGTAAATCTACCGTAATCTTTGTCTAAAAAAAATAAAAAACCAAGAATGAATCAAAATTTCAAAGAAAAAACATGCAAATCGGTATCTATTTTTGCTTTACTTCTTTTTCTCTCTAATTAAAGCCTTCTAGGTGATGTGACAAATATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7880</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>284296</contig_pos>
        <strand>+</strand>
        <context>GGSTAAAAAT[C/T]CAAACATTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACTGGGACTACAGTAAGAAGAGACCCAGAATTTCAGGAGGGTAAAAAT</left_flank>
        <right_flank>CAAACATTTGGAAGCACCCAAAGCTCAAAAACCTTTTCAAATCCAGAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCAAATGCAACAAAAATTAAGGGTTTGGAAATATGGGACTTTTAAGTATGGGACTATGGGACTTTTGGGACGAAATATGGGACTTTGAAAATCGAAAAAAAAGTGGTAAATTGACAAAATATTTTTGATATTATGATTATCATTTTATCAGTTGGCCACTTTTTTTTCTATCTTTTACAGGAACCGAGATGTATGGGCTCAAACTTGACGGATTGGTTGGCCTTCTAACAGAGTTTTCGGTAATTTTTGCCTCTAGATTTGAAATCAGCAAACGTGCCTATAGCAAAAAAACCCTTATCCAATCATTATAATTAAAATTACTCACTATTTTGATGACTGTGACTAGAATCTAGATTTCCAAAAAAAATAGTGATGTAATTACTCAAATAAAAGTACATCAACCAATCCCTTGGCTGTAACTTCTGATGTCAATGACTTTGTACTTTTAAACTGGGACTACAGTAAGAAGAGACCCAGAATTTCAGGAGGGTAAAAATCCAAACATTTGGAAGCACCCAAAGCTCAAAAACCTTTTCAAATCCAGAAAATTCCAAATTAATTCTGCCTTTGAAAATTCGAAAATTTTATGGTCAGCCGTAAATTTAAATGGTTTACCTCAACTAAGCCAGCCGTAAATCTACCGTAATCTTTGTCTAAAAAAAATAAAAAACCAAGAATGAATCAAAATTTCAAAGAAAAAACATGCAAATCGGTATCTATTTTTGCTTTACTTCTTTTTCTCTCTAATTAAAGCCTTCTAGGTGATGTGACAAATATCACTTGTAGTTTTGAGAGTGTAGAGATTACAATGCTTTGAAATTCATTTTTCAAAACTTTTGATTCTTTGAGCTAGAAGAAATTTGAACTGAAATGCCTTGAGAATTTTTCAAGGATAATGTGCGTCATTGAAAATTGGACTGTGATTGGAAAAGGTGAGAAAAGCTTGAGTTTTGAATCGAAAGTCTGGATTTAGAAACGTGAGGAATCATTTTCAGTCA</canonical>
            <polymorphic>AAGCAAATGCAACAAAAATTAAGGGTTTGGAAATATGGGACTTTTAAGTATGGGACTATGGGACTTTTGGGACGAAATATGGGACTTTGAAAATCGAAAAAAAAGTGGTAAATTGACAAAATATTTTTGATATTATGATTATCATTTTATCAGTTGGCCACTTTTTTTTCTATCTTTTACAGGAACCGAGATGTATGGGCTCAAACTTGACGGATTGGTTGGCCTTCTAACAGAGTTTTCGGTAATTTTTGCCTCTAGATTTGAAATCAGCAAACGTGCCTATAGCAAAAAAACCCTTATCCAATCATTATAATTAAAATTACTCACTATTTTGATGACTGTGACTAGAATCTAGATTTCCAAAAAAAATAGTGATGTAATTACTCAAATAAAAGTACATCAACCAATCCCTTGGCTGTAACTTCTGATGTCAATGACTTTGTACTTTTAAACTGGGACTACAGTAAGAAGAGACCCAGAATTTCAGGAGGGTAAAAATYCAAACATTTGGAAGCACCCAAAGCTCAAAAACCTTTTCAAATCCAGAAAATTCCAAATTAATTCTGCCTTTGAAAATTCGAAAATTTTATGGTCAGCCGTAAATTTAAATGGTTTACCTCAACTAAGCCAGCCGTAAATCTACCGTAATCTTTGTCTAAAAAAAATAAAAAACCAAGAATGAATCAAAATTTCAAAGAAAAAACATGCAAATCGGTATCTATTTTTGCTTTACTTCTTTTTCTCTCTAATTAAAGCCTTCTAGGTGATGTGACAAATATCACTTGTAGTTTTGAGAGTGTAGAGATTACAATGCTTTGAAATTCATTTTTCAAAACTTTTGATTCTTTGAGCTAGAAGAAATTTGAACTGAAATGCCTTGAGAATTTTTCAAGGATAATGTGCGTCATTGAAAATTGGACTGTGATTGGAAAAGGTGAGAAAAGCTTGAGTTTTGAATCGAAAGTCTGGATTTAGAAACGTGAGGAATCATTTTCAGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>BstXI</enzyme>
                </isoschizomers>
                <canonical_bands>493 411 96</canonical_bands>
                <polymorphic_bands>589 411</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACTCACTATTTTGATGACTGTGA</pcr_primer_p1>
		<pcr_primer_p2>CAGAATTAATTTGGAATTTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTACTCACTATTTTGATGACTGTGACTAGAATCTAGATTTCCAAAAAAAATAGTGATGTAATTACTCAAATAAAAGTACATCAACCAATCCCTTGGCTGTAACTTCTGATGTCAATGACTTTGTACTTTTAAACTGGGACTACAGTAAGAAGAGACCCAGAATTTCAGGAGGGTAAAAATCCAAACATTTGGAAGCACCCAAAGCTCAAAAACCTTTTCAAATCCAGAAAATTCCAAATTAATTCTG</canonical_amplicon>
		<polymorphic_amplicon>TTACTCACTATTTTGATGACTGTGACTAGAATCTAGATTTCCAAAAAAAATAGTGATGTAATTACTCAAATAAAAGTACATCAACCAATCCCTTGGCTGTAACTTCTGATGTCAATGACTTTGTACTTTTAAACTGGGACTACAGTAAGAAGAGACCCAGAATTTCAGGAGGGTAAAAATYCAAACATTTGGAAGCACCCAAAGCTCAAAAACCTTTTCAAATCCAGAAAATTCCAAATTAATTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7881</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>284288</contig_pos>
        <strand>+</strand>
        <context>TTTCAGGAGG[C/G]TAAAAATYCA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTACTTTTAAACTGGGACTACAGTAAGAAGAGACCCAGAATTTCAGGAGG</left_flank>
        <right_flank>TAAAAATCCAAACATTTGGAAGCACCCAAAGCTCAAAAACCTTTTCAAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATGAGAAAGCAAATGCAACAAAAATTAAGGGTTTGGAAATATGGGACTTTTAAGTATGGGACTATGGGACTTTTGGGACGAAATATGGGACTTTGAAAATCGAAAAAAAAGTGGTAAATTGACAAAATATTTTTGATATTATGATTATCATTTTATCAGTTGGCCACTTTTTTTTCTATCTTTTACAGGAACCGAGATGTATGGGCTCAAACTTGACGGATTGGTTGGCCTTCTAACAGAGTTTTCGGTAATTTTTGCCTCTAGATTTGAAATCAGCAAACGTGCCTATAGCAAAAAAACCCTTATCCAATCATTATAATTAAAATTACTCACTATTTTGATGACTGTGACTAGAATCTAGATTTCCAAAAAAAATAGTGATGTAATTACTCAAATAAAAGTACATCAACCAATCCCTTGGCTGTAACTTCTGATGTCAATGACTTTGTACTTTTAAACTGGGACTACAGTAAGAAGAGACCCAGAATTTCAGGAGGGTAAAAATCCAAACATTTGGAAGCACCCAAAGCTCAAAAACCTTTTCAAATCCAGAAAATTCCAAATTAATTCTGCCTTTGAAAATTCGAAAATTTTATGGTCAGCCGTAAATTTAAATGGTTTACCTCAACTAAGCCAGCCGTAAATCTACCGTAATCTTTGTCTAAAAAAAATAAAAAACCAAGAATGAATCAAAATTTCAAAGAAAAAACATGCAAATCGGTATCTATTTTTGCTTTACTTCTTTTTCTCTCTAATTAAAGCCTTCTAGGTGATGTGACAAATATCACTTGTAGTTTTGAGAGTGTAGAGATTACAATGCTTTGAAATTCATTTTTCAAAACTTTTGATTCTTTGAGCTAGAAGAAATTTGAACTGAAATGCCTTGAGAATTTTTCAAGGATAATGTGCGTCATTGAAAATTGGACTGTGATTGGAAAAGGTGAGAAAAGCTTGAGTTTTGAATCGAAAGTCTGGATTTAGAAACGTGAGGAATCATT</canonical>
            <polymorphic>AGATGAGAAAGCAAATGCAACAAAAATTAAGGGTTTGGAAATATGGGACTTTTAAGTATGGGACTATGGGACTTTTGGGACGAAATATGGGACTTTGAAAATCGAAAAAAAAGTGGTAAATTGACAAAATATTTTTGATATTATGATTATCATTTTATCAGTTGGCCACTTTTTTTTCTATCTTTTACAGGAACCGAGATGTATGGGCTCAAACTTGACGGATTGGTTGGCCTTCTAACAGAGTTTTCGGTAATTTTTGCCTCTAGATTTGAAATCAGCAAACGTGCCTATAGCAAAAAAACCCTTATCCAATCATTATAATTAAAATTACTCACTATTTTGATGACTGTGACTAGAATCTAGATTTCCAAAAAAAATAGTGATGTAATTACTCAAATAAAAGTACATCAACCAATCCCTTGGCTGTAACTTCTGATGTCAATGACTTTGTACTTTTAAACTGGGACTACAGTAAGAAGAGACCCAGAATTTCAGGAGGSTAAAAATCCAAACATTTGGAAGCACCCAAAGCTCAAAAACCTTTTCAAATCCAGAAAATTCCAAATTAATTCTGCCTTTGAAAATTCGAAAATTTTATGGTCAGCCGTAAATTTAAATGGTTTACCTCAACTAAGCCAGCCGTAAATCTACCGTAATCTTTGTCTAAAAAAAATAAAAAACCAAGAATGAATCAAAATTTCAAAGAAAAAACATGCAAATCGGTATCTATTTTTGCTTTACTTCTTTTTCTCTCTAATTAAAGCCTTCTAGGTGATGTGACAAATATCACTTGTAGTTTTGAGAGTGTAGAGATTACAATGCTTTGAAATTCATTTTTCAAAACTTTTGATTCTTTGAGCTAGAAGAAATTTGAACTGAAATGCCTTGAGAATTTTTCAAGGATAATGTGCGTCATTGAAAATTGGACTGTGATTGGAAAAGGTGAGAAAAGCTTGAGTTTTGAATCGAAAGTCTGGATTTAGAAACGTGAGGAATCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACTCACTATTTTGATGACTGTGA</pcr_primer_p1>
		<pcr_primer_p2>CAGAATTAATTTGGAATTTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTACTCACTATTTTGATGACTGTGACTAGAATCTAGATTTCCAAAAAAAATAGTGATGTAATTACTCAAATAAAAGTACATCAACCAATCCCTTGGCTGTAACTTCTGATGTCAATGACTTTGTACTTTTAAACTGGGACTACAGTAAGAAGAGACCCAGAATTTCAGGAGGGTAAAAATCCAAACATTTGGAAGCACCCAAAGCTCAAAAACCTTTTCAAATCCAGAAAATTCCAAATTAATTCTG</canonical_amplicon>
		<polymorphic_amplicon>TTACTCACTATTTTGATGACTGTGACTAGAATCTAGATTTCCAAAAAAAATAGTGATGTAATTACTCAAATAAAAGTACATCAACCAATCCCTTGGCTGTAACTTCTGATGTCAATGACTTTGTACTTTTAAACTGGGACTACAGTAAGAAGAGACCCAGAATTTCAGGAGGSTAAAAATCCAAACATTTGGAAGCACCCAAAGCTCAAAAACCTTTTCAAATCCAGAAAATTCCAAATTAATTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7882</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>284266</contig_pos>
        <strand>+</strand>
        <context>TACAGTAAGA[A/C]GAGACCCAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACTTCTGATGTCAATGACTTTGTACTTTTAAACTGGGACTACAGTAAGA</left_flank>
        <right_flank>GAGACCCAGAATTTCAGGAGGGTAAAAATCCAAACATTTGGAAGCACCCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGGGATATGTAGATTACGGTAGATGAGAAAGCAAATGCAACAAAAATTAAGGGTTTGGAAATATGGGACTTTTAAGTATGGGACTATGGGACTTTTGGGACGAAATATGGGACTTTGAAAATCGAAAAAAAAGTGGTAAATTGACAAAATATTTTTGATATTATGATTATCATTTTATCAGTTGGCCACTTTTTTTTCTATCTTTTACAGGAACCGAGATGTATGGGCTCAAACTTGACGGATTGGTTGGCCTTCTAACAGAGTTTTCGGTAATTTTTGCCTCTAGATTTGAAATCAGCAAACGTGCCTATAGCAAAAAAACCCTTATCCAATCATTATAATTAAAATTACTCACTATTTTGATGACTGTGACTAGAATCTAGATTTCCAAAAAAAATAGTGATGTAATTACTCAAATAAAAGTACATCAACCAATCCCTTGGCTGTAACTTCTGATGTCAATGACTTTGTACTTTTAAACTGGGACTACAGTAAGAAGAGACCCAGAATTTCAGGAGGGTAAAAATCCAAACATTTGGAAGCACCCAAAGCTCAAAAACCTTTTCAAATCCAGAAAATTCCAAATTAATTCTGCCTTTGAAAATTCGAAAATTTTATGGTCAGCCGTAAATTTAAATGGTTTACCTCAACTAAGCCAGCCGTAAATCTACCGTAATCTTTGTCTAAAAAAAATAAAAAACCAAGAATGAATCAAAATTTCAAAGAAAAAACATGCAAATCGGTATCTATTTTTGCTTTACTTCTTTTTCTCTCTAATTAAAGCCTTCTAGGTGATGTGACAAATATCACTTGTAGTTTTGAGAGTGTAGAGATTACAATGCTTTGAAATTCATTTTTCAAAACTTTTGATTCTTTGAGCTAGAAGAAATTTGAACTGAAATGCCTTGAGAATTTTTCAAGGATAATGTGCGTCATTGAAAATTGGACTGTGATTGGAAAAGGTGAGAAAAGCTTGAGTTTTGAATCGAAAGTCTGGA</canonical>
            <polymorphic>AAGGGGATATGTAGATTACGGTAGATGAGAAAGCAAATGCAACAAAAATTAAGGGTTTGGAAATATGGGACTTTTAAGTATGGGACTATGGGACTTTTGGGACGAAATATGGGACTTTGAAAATCGAAAAAAAAGTGGTAAATTGACAAAATATTTTTGATATTATGATTATCATTTTATCAGTTGGCCACTTTTTTTTCTATCTTTTACAGGAACCGAGATGTATGGGCTCAAACTTGACGGATTGGTTGGCCTTCTAACAGAGTTTTCGGTAATTTTTGCCTCTAGATTTGAAATCAGCAAACGTGCCTATAGCAAAAAAACCCTTATCCAATCATTATAATTAAAATTACTCACTATTTTGATGACTGTGACTAGAATCTAGATTTCCAAAAAAAATAGTGATGTAATTACTCAAATAAAAGTACATCAACCAATCCCTTGGCTGTAACTTCTGATGTCAATGACTTTGTACTTTTAAACTGGGACTACAGTAAGAMGAGACCCAGAATTTCAGGAGGGTAAAAATCCAAACATTTGGAAGCACCCAAAGCTCAAAAACCTTTTCAAATCCAGAAAATTCCAAATTAATTCTGCCTTTGAAAATTCGAAAATTTTATGGTCAGCCGTAAATTTAAATGGTTTACCTCAACTAAGCCAGCCGTAAATCTACCGTAATCTTTGTCTAAAAAAAATAAAAAACCAAGAATGAATCAAAATTTCAAAGAAAAAACATGCAAATCGGTATCTATTTTTGCTTTACTTCTTTTTCTCTCTAATTAAAGCCTTCTAGGTGATGTGACAAATATCACTTGTAGTTTTGAGAGTGTAGAGATTACAATGCTTTGAAATTCATTTTTCAAAACTTTTGATTCTTTGAGCTAGAAGAAATTTGAACTGAAATGCCTTGAGAATTTTTCAAGGATAATGTGCGTCATTGAAAATTGGACTGTGATTGGAAAAGGTGAGAAAAGCTTGAGTTTTGAATCGAAAGTCTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACTCACTATTTTGATGACTGTGA</pcr_primer_p1>
		<pcr_primer_p2>CAGAATTAATTTGGAATTTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTACTCACTATTTTGATGACTGTGACTAGAATCTAGATTTCCAAAAAAAATAGTGATGTAATTACTCAAATAAAAGTACATCAACCAATCCCTTGGCTGTAACTTCTGATGTCAATGACTTTGTACTTTTAAACTGGGACTACAGTAAGAAGAGACCCAGAATTTCAGGAGGGTAAAAATCCAAACATTTGGAAGCACCCAAAGCTCAAAAACCTTTTCAAATCCAGAAAATTCCAAATTAATTCTG</canonical_amplicon>
		<polymorphic_amplicon>TTACTCACTATTTTGATGACTGTGACTAGAATCTAGATTTCCAAAAAAAATAGTGATGTAATTACTCAAATAAAAGTACATCAACCAATCCCTTGGCTGTAACTTCTGATGTCAATGACTTTGTACTTTTAAACTGGGACTACAGTAAGAMGAGACCCAGAATTTCAGGAGGGTAAAAATCCAAACATTTGGAAGCACCCAAAGCTCAAAAACCTTTTCAAATCCAGAAAATTCCAAATTAATTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7883</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>284251</contig_pos>
        <strand>+</strand>
        <context>CTTTTAAACT[A/G]GGACTACAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATCCCTTGGCTGTAACTTCTGATGTCAATGACTTTGTACTTTTAAACT</left_flank>
        <right_flank>GGACTACAGTAAGAAGAGACCCAGAATTTCAGGAGGGTAAAAATCCAAAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGATGAGAAGGAAAAAGGGGATATGTAGATTACGGTAGATGAGAAAGCAAATGCAACAAAAATTAAGGGTTTGGAAATATGGGACTTTTAAGTATGGGACTATGGGACTTTTGGGACGAAATATGGGACTTTGAAAATCGAAAAAAAAGTGGTAAATTGACAAAATATTTTTGATATTATGATTATCATTTTATCAGTTGGCCACTTTTTTTTCTATCTTTTACAGGAACCGAGATGTATGGGCTCAAACTTGACGGATTGGTTGGCCTTCTAACAGAGTTTTCGGTAATTTTTGCCTCTAGATTTGAAATCAGCAAACGTGCCTATAGCAAAAAAACCCTTATCCAATCATTATAATTAAAATTACTCACTATTTTGATGACTGTGACTAGAATCTAGATTTCCAAAAAAAATAGTGATGTAATTACTCAAATAAAAGTACATCAACCAATCCCTTGGCTGTAACTTCTGATGTCAATGACTTTGTACTTTTAAACTGGGACTACAGTAAGAAGAGACCCAGAATTTCAGGAGGGTAAAAATCCAAACATTTGGAAGCACCCAAAGCTCAAAAACCTTTTCAAATCCAGAAAATTCCAAATTAATTCTGCCTTTGAAAATTCGAAAATTTTATGGTCAGCCGTAAATTTAAATGGTTTACCTCAACTAAGCCAGCCGTAAATCTACCGTAATCTTTGTCTAAAAAAAATAAAAAACCAAGAATGAATCAAAATTTCAAAGAAAAAACATGCAAATCGGTATCTATTTTTGCTTTACTTCTTTTTCTCTCTAATTAAAGCCTTCTAGGTGATGTGACAAATATCACTTGTAGTTTTGAGAGTGTAGAGATTACAATGCTTTGAAATTCATTTTTCAAAACTTTTGATTCTTTGAGCTAGAAGAAATTTGAACTGAAATGCCTTGAGAATTTTTCAAGGATAATGTGCGTCATTGAAAATTGGACTGTGATTGGAAAAGGTGAGAAAAGCTTGAGTTTTG</canonical>
            <polymorphic>TAGATGAGAAGGAAAAAGGGGATATGTAGATTACGGTAGATGAGAAAGCAAATGCAACAAAAATTAAGGGTTTGGAAATATGGGACTTTTAAGTATGGGACTATGGGACTTTTGGGACGAAATATGGGACTTTGAAAATCGAAAAAAAAGTGGTAAATTGACAAAATATTTTTGATATTATGATTATCATTTTATCAGTTGGCCACTTTTTTTTCTATCTTTTACAGGAACCGAGATGTATGGGCTCAAACTTGACGGATTGGTTGGCCTTCTAACAGAGTTTTCGGTAATTTTTGCCTCTAGATTTGAAATCAGCAAACGTGCCTATAGCAAAAAAACCCTTATCCAATCATTATAATTAAAATTACTCACTATTTTGATGACTGTGACTAGAATCTAGATTTCCAAAAAAAATAGTGATGTAATTACTCAAATAAAAGTACATCAACCAATCCCTTGGCTGTAACTTCTGATGTCAATGACTTTGTACTTTTAAACTRGGACTACAGTAAGAAGAGACCCAGAATTTCAGGAGGGTAAAAATCCAAACATTTGGAAGCACCCAAAGCTCAAAAACCTTTTCAAATCCAGAAAATTCCAAATTAATTCTGCCTTTGAAAATTCGAAAATTTTATGGTCAGCCGTAAATTTAAATGGTTTACCTCAACTAAGCCAGCCGTAAATCTACCGTAATCTTTGTCTAAAAAAAATAAAAAACCAAGAATGAATCAAAATTTCAAAGAAAAAACATGCAAATCGGTATCTATTTTTGCTTTACTTCTTTTTCTCTCTAATTAAAGCCTTCTAGGTGATGTGACAAATATCACTTGTAGTTTTGAGAGTGTAGAGATTACAATGCTTTGAAATTCATTTTTCAAAACTTTTGATTCTTTGAGCTAGAAGAAATTTGAACTGAAATGCCTTGAGAATTTTTCAAGGATAATGTGCGTCATTGAAAATTGGACTGTGATTGGAAAAGGTGAGAAAAGCTTGAGTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACTCACTATTTTGATGACTGTGA</pcr_primer_p1>
		<pcr_primer_p2>CAGAATTAATTTGGAATTTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTACTCACTATTTTGATGACTGTGACTAGAATCTAGATTTCCAAAAAAAATAGTGATGTAATTACTCAAATAAAAGTACATCAACCAATCCCTTGGCTGTAACTTCTGATGTCAATGACTTTGTACTTTTAAACTGGGACTACAGTAAGAAGAGACCCAGAATTTCAGGAGGGTAAAAATCCAAACATTTGGAAGCACCCAAAGCTCAAAAACCTTTTCAAATCCAGAAAATTCCAAATTAATTCTG</canonical_amplicon>
		<polymorphic_amplicon>TTACTCACTATTTTGATGACTGTGACTAGAATCTAGATTTCCAAAAAAAATAGTGATGTAATTACTCAAATAAAAGTACATCAACCAATCCCTTGGCTGTAACTTCTGATGTCAATGACTTTGTACTTTTAAACTRGGACTACAGTAAGAAGAGACCCAGAATTTCAGGAGGGTAAAAATCCAAACATTTGGAAGCACCCAAAGCTCAAAAACCTTTTCAAATCCAGAAAATTCCAAATTAATTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7890</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>56698</contig_pos>
        <strand>+</strand>
        <context>GTTTAAACGA[C/T]TTTGAAAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAATTTATGAGCCTTCTAAAAGAGTTTAAAACTATTCATGTTTAAACGA</left_flank>
        <right_flank>TTTGAAAACTCGAGAGAACTCAATAGCTTTGATAATCTGAAAATTCAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAAAAAATAATGACGAAAATCAGCATTTTTAGAAAGGATGGCCTAGAAAAACAAAAACCTAGGCCACCAGTTACAGATGTTTAGAACACAGGTCTAAGTGCTCTGGTATTGCCATAGACTATTCGCCTTTTCTTTTCCCCATTTTTTGAAACAGTAAAAATTAGAAAAAAAACCAATAGAATTCTGAGAAAAAATTGAGTATATTTTGAAAGCGCATAACTTGGTTCAAATGCCGAATTTTTCAAAAATTCTTATTGATAAATGTAGGACTTGATAAGAGCTTCGGAATGATATAAAACATGACTAGGTTTCAAAACTGAAGAGATTTTTGAAATCGAAATTTCAAAAATATTCAATTTTGGAGTATAATCATGTTTTATATCATTTTGTAGCTCTTTTTGAAATCTACAGTTTTCAGTTGAATTTTTCAAAATTATTCGATTTGAACCAATTTATGAGCCTTCTAAAAGAGTTTAAAACTATTCATGTTTAAACGATTTTGAAAACTCGAGAGAACTCAATAGCTTTGATAATCTGAAAATTCAAAACATTTGATTTTTCAAAAAATTTTTGAAACATTAAATATTTGAAAAAAGACTTGCAGAAAATTTATGACTTCTGTTCATAAGTTCGTAAATTGCTTCAAATTTGATATTTTCAAAAATTTGAATTGGAAAATGTAGAACTTGAAAAGAGCTTCAAAATGGTATAAAAATGACCACATTCCAAAAATCAATATTTCAGAAAAATCGATTTTAAAGGTCCCCCAATTTTTGAACCTAGTCATGTTTCATATCAGTTTTGGTGATCTTTTCAAAGCCTACATTTTCCAATTTTAATTTTTTGAAAATTCGAATTTTGAATAAAGTTATGCGTTTTTAAATGACTTCAAAAAATGTAGACATCGGGACAAACAGATTTTATAAGGTTTTTGGACGAAAATTATAAGAAATCATCTGGACACATAGATTGTCTTTGTGAATACGGAAAGAATTGAA</canonical>
            <polymorphic>TTCAAAAAATAATGACGAAAATCAGCATTTTTAGAAAGGATGGCCTAGAAAAACAAAAACCTAGGCCACCAGTTACAGATGTTTAGAACACAGGTCTAAGTGCTCTGGTATTGCCATAGACTATTCGCCTTTTCTTTTCCCCATTTTTTGAAACAGTAAAAATTAGAAAAAAAACCAATAGAATTCTGAGAAAAAATTGAGTATATTTTGAAAGCGCATAACTTGGTTCAAATGCCGAATTTTTCAAAAATTCTTATTGATAAATGTAGGACTTGATAAGAGCTTCGGAATGATATAAAACATGACTAGGTTTCAAAACTGAAGAGATTTTTGAAATCGAAATTTCAAAAATATTCAATTTTGGAGTATAATCATGTTTTATATCATTTTGTAGCTCTTTTTGAAATCTACAGTTTTCAGTTGAATTTTTCAAAATTATTCGATTTGAACCAATTTATGAGCCTTCTAAAAGAGTTTAAAACTATTCATGTTTAAACGAYTTTGAAAACTCGAGAGAACTCAATAGCTTTGATAATCTGAAAATTCAAAACATTTGATTTTTCAAAAAATTTTTGAAACATTAAATATTTGAAAAAAGACTTGCAGAAAATTTATGACTTCTGTTCATAAGTTCGTAAATTGCTTCAAATTTGATATTTTCAAAAATTTGAATTGGAAAATGTAGAACTTGAAAAGAGCTTCAAAATGGTATAAAAATGACCACATTCCAAAAATCAATATTTCAGAAAAATCGATTTTAAAGGTCCCCCAATTTTTGAACCTAGTCATGTTTCATATCAGTTTTGGTGATCTTTTCAAAGCCTACATTTTCCAATTTTAATTTTTTGAAAATTCGAATTTTGAATAAAGTTATGCGTTTTTAAATGACTTCAAAAAATGTAGACATCGGGACAAACAGATTTTATAAGGTTTTTGGACGAAAATTATAAGAAATCATCTGGACACATAGATTGTCTTTGTGAATACGGAAAGAATTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACCAATAGAATTCTGAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGTCCCGATGTCTACATTT</pcr_primer_p2>
		<pcr_amplicon_size>744</pcr_amplicon_size>
		<canonical_amplicon>AAACCAATAGAATTCTGAGAAAAAATTGAGTATATTTTGAAAGCGCATAACTTGGTTCAAATGCCGAATTTTTCAAAAATTCTTATTGATAAATGTAGGACTTGATAAGAGCTTCGGAATGATATAAAACATGACTAGGTTTCAAAACTGAAGAGATTTTTGAAATCGAAATTTCAAAAATATTCAATTTTGGAGTATAATCATGTTTTATATCATTTTGTAGCTCTTTTTGAAATCTACAGTTTTCAGTTGAATTTTTCAAAATTATTCGATTTGAACCAATTTATGAGCCTTCTAAAAGAGTTTAAAACTATTCATGTTTAAACGATTTTGAAAACTCGAGAGAACTCAATAGCTTTGATAATCTGAAAATTCAAAACATTTGATTTTTCAAAAAATTTTTGAAACATTAAATATTTGAAAAAAGACTTGCAGAAAATTTATGACTTCTGTTCATAAGTTCGTAAATTGCTTCAAATTTGATATTTTCAAAAATTTGAATTGGAAAATGTAGAACTTGAAAAGAGCTTCAAAATGGTATAAAAATGACCACATTCCAAAAATCAATATTTCAGAAAAATCGATTTTAAAGGTCCCCCAATTTTTGAACCTAGTCATGTTTCATATCAGTTTTGGTGATCTTTTCAAAGCCTACATTTTCCAATTTTAATTTTTTGAAAATTCGAATTTTGAATAAAGTTATGCGTTTTTAAATGACTTCAAAAAATGTAGACATCGGGACAA</canonical_amplicon>
		<polymorphic_amplicon>AAACCAATAGAATTCTGAGAAAAAATTGAGTATATTTTGAAAGCGCATAACTTGGTTCAAATGCCGAATTTTTCAAAAATTCTTATTGATAAATGTAGGACTTGATAAGAGCTTCGGAATGATATAAAACATGACTAGGTTTCAAAACTGAAGAGATTTTTGAAATCGAAATTTCAAAAATATTCAATTTTGGAGTATAATCATGTTTTATATCATTTTGTAGCTCTTTTTGAAATCTACAGTTTTCAGTTGAATTTTTCAAAATTATTCGATTTGAACCAATTTATGAGCCTTCTAAAAGAGTTTAAAACTATTCATGTTTAAACGAYTTTGAAAACTCGAGAGAACTCAATAGCTTTGATAATCTGAAAATTCAAAACATTTGATTTTTCAAAAAATTTTTGAAACATTAAATATTTGAAAAAAGACTTGCAGAAAATTTATGACTTCTGTTCATAAGTTCGTAAATTGCTTCAAATTTGATATTTTCAAAAATTTGAATTGGAAAATGTAGAACTTGAAAAGAGCTTCAAAATGGTATAAAAATGACCACATTCCAAAAATCAATATTTCAGAAAAATCGATTTTAAAGGTCCCCCAATTTTTGAACCTAGTCATGTTTCATATCAGTTTTGGTGATCTTTTCAAAGCCTACATTTTCCAATTTTAATTTTTTGAAAATTCGAATTTTGAATAAAGTTATGCGTTTTTAAATGACTTCAAAAAATGTAGACATCGGGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7891</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>56810</contig_pos>
        <strand>+</strand>
        <context>TGCAGAAAAT[G/T]TATgacttct</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCAAAAAATTTTTGAAACATTAAATATTTGAAAAAAGACTTGCAGAAAAT</left_flank>
        <right_flank>TATGACTTCTGTTCATAAGTTCGTAAATTGCTTCAAATTTGATATTTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCATAGACTATTCGCCTTTTCTTTTCCCCATTTTTTGAAACAGTAAAAATTAGAAAAAAAACCAATAGAATTCTGAGAAAAAATTGAGTATATTTTGAAAGCGCATAACTTGGTTCAAATGCCGAATTTTTCAAAAATTCTTATTGATAAATGTAGGACTTGATAAGAGCTTCGGAATGATATAAAACATGACTAGGTTTCAAAACTGAAGAGATTTTTGAAATCGAAATTTCAAAAATATTCAATTTTGGAGTATAATCATGTTTTATATCATTTTGTAGCTCTTTTTGAAATCTACAGTTTTCAGTTGAATTTTTCAAAATTATTCGATTTGAACCAATTTATGAGCCTTCTAAAAGAGTTTAAAACTATTCATGTTTAAACGATTTTGAAAACTCGAGAGAACTCAATAGCTTTGATAATCTGAAAATTCAAAACATTTGATTTTTCAAAAAATTTTTGAAACATTAAATATTTGAAAAAAGACTTGCAGAAAATTTATGACTTCTGTTCATAAGTTCGTAAATTGCTTCAAATTTGATATTTTCAAAAATTTGAATTGGAAAATGTAGAACTTGAAAAGAGCTTCAAAATGGTATAAAAATGACCACATTCCAAAAATCAATATTTCAGAAAAATCGATTTTAAAGGTCCCCCAATTTTTGAACCTAGTCATGTTTCATATCAGTTTTGGTGATCTTTTCAAAGCCTACATTTTCCAATTTTAATTTTTTGAAAATTCGAATTTTGAATAAAGTTATGCGTTTTTAAATGACTTCAAAAAATGTAGACATCGGGACAAACAGATTTTATAAGGTTTTTGGACGAAAATTATAAGAAATCATCTGGACACATAGATTGTCTTTGTGAATACGGAAAGAATTGAATTGTGTGAGAATATAAAAAAAAAAACTCGAGAAAAATTGAAACAGAAAATTTTCAAATATTTTTTTGTATTAAAAGAGTTTTCGAAATTTCTGAAACATTACTTCAAAAATT</canonical>
            <polymorphic>GCCATAGACTATTCGCCTTTTCTTTTCCCCATTTTTTGAAACAGTAAAAATTAGAAAAAAAACCAATAGAATTCTGAGAAAAAATTGAGTATATTTTGAAAGCGCATAACTTGGTTCAAATGCCGAATTTTTCAAAAATTCTTATTGATAAATGTAGGACTTGATAAGAGCTTCGGAATGATATAAAACATGACTAGGTTTCAAAACTGAAGAGATTTTTGAAATCGAAATTTCAAAAATATTCAATTTTGGAGTATAATCATGTTTTATATCATTTTGTAGCTCTTTTTGAAATCTACAGTTTTCAGTTGAATTTTTCAAAATTATTCGATTTGAACCAATTTATGAGCCTTCTAAAAGAGTTTAAAACTATTCATGTTTAAACGATTTTGAAAACTCGAGAGAACTCAATAGCTTTGATAATCTGAAAATTCAAAACATTTGATTTTTCAAAAAATTTTTGAAACATTAAATATTTGAAAAAAGACTTGCAGAAAATKTATGACTTCTGTTCATAAGTTCGTAAATTGCTTCAAATTTGATATTTTCAAAAATTTGAATTGGAAAATGTAGAACTTGAAAAGAGCTTCAAAATGGTATAAAAATGACCACATTCCAAAAATCAATATTTCAGAAAAATCGATTTTAAAGGTCCCCCAATTTTTGAACCTAGTCATGTTTCATATCAGTTTTGGTGATCTTTTCAAAGCCTACATTTTCCAATTTTAATTTTTTGAAAATTCGAATTTTGAATAAAGTTATGCGTTTTTAAATGACTTCAAAAAATGTAGACATCGGGACAAACAGATTTTATAAGGTTTTTGGACGAAAATTATAAGAAATCATCTGGACACATAGATTGTCTTTGTGAATACGGAAAGAATTGAATTGTGTGAGAATATAAAAAAAAAAACTCGAGAAAAATTGAAACAGAAAATTTTCAAATATTTTTTTGTATTAAAAGAGTTTTCGAAATTTCTGAAACATTACTTCAAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>191 186 118 92 83 69 56 41 39 38 27 26 17 11 6</canonical_bands>
                <polymorphic_bands>191 186 118 92 83 80 69 56 38 27 26 17 11 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>100 92 90 86 67 63 51 48 43 41 38 36 29 26 23 21 18 17 16 13 13 11 11 10 10 6 6 6 5 4</canonical_bands>
                <polymorphic_bands>100 92 90 86 70 67 63 51 48 43 38 36 26 23 21 18 17 16 13 13 11 11 10 10 6 6 6 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGATAATCTGAAAATTCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TGTCCCGATGTCTACATTTT</pcr_primer_p2>
		<pcr_amplicon_size>387</pcr_amplicon_size>
		<canonical_amplicon>TTTGATAATCTGAAAATTCAAAACATTTGATTTTTCAAAAAATTTTTGAAACATTAAATATTTGAAAAAAGACTTGCAGAAAATTTATGACTTCTGTTCATAAGTTCGTAAATTGCTTCAAATTTGATATTTTCAAAAATTTGAATTGGAAAATGTAGAACTTGAAAAGAGCTTCAAAATGGTATAAAAATGACCACATTCCAAAAATCAATATTTCAGAAAAATCGATTTTAAAGGTCCCCCAATTTTTGAACCTAGTCATGTTTCATATCAGTTTTGGTGATCTTTTCAAAGCCTACATTTTCCAATTTTAATTTTTTGAAAATTCGAATTTTGAATAAAGTTATGCGTTTTTAAATGACTTCAAAAAATGTAGACATCGGGACA</canonical_amplicon>
		<polymorphic_amplicon>TTTGATAATCTGAAAATTCAAAACATTTGATTTTTCAAAAAATTTTTGAAACATTAAATATTTGAAAAAAGACTTGCAGAAAATKTATGACTTCTGTTCATAAGTTCGTAAATTGCTTCAAATTTGATATTTTCAAAAATTTGAATTGGAAAATGTAGAACTTGAAAAGAGCTTCAAAATGGTATAAAAATGACCACATTCCAAAAATCAATATTTCAGAAAAATCGATTTTAAAGGTCCCCCAATTTTTGAACCTAGTCATGTTTCATATCAGTTTTGGTGATCTTTTCAAAGCCTACATTTTCCAATTTTAATTTTTTGAAAATTCGAATTTTGAATAAAGTTATGCGTTTTTAAATGACTTCAAAAAATGTAGACATCGGGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7892</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>59354</contig_pos>
        <strand>+</strand>
        <context>TAGTCATAAA[C/T]TCCAGAATCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAATACAGACTGCTTATAAAGGGGTGTCCATTGAGATCTTTAGTCATAAA</left_flank>
        <right_flank>TCCAGAATCTTCTTTTCCCGAATAATAGCTCCCATTTTCTGGTGCTTCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGAAGTGACGCGGAGCCGAGCACTTAATACTGTGTCCTAGACATCTGTAACTAGTGGCCTAGGCTTTGGTTTTTCTAGGCCATCCTTTCTGAAAATGCTGATTTTTGTCAATCGTTTTTTGAAAAGTCGCATTTTTCAGATTTTCTGAAATTTCAACAAAAAAAGAAGGGGTGGGGTTACTGTAGGAATTTTTCTTGAAAAATTCTCATGTAATTGTCCGAATAAAAAACTTTCAAATCGGATTTTACGGGATTTTTTGGATTTTTCGAATTTTCATGAATTTTCAAACTAACTATTTTCAGAATTTTTTTTTGGATTTTTGGAAGTGAACTAAATACTTAATTTATGGATTTTAAGATATTTTTCAGACTTCAAAATTCCAAAAAAATCTTTAAAATCGAAAAAAAAAATCTAAACTTACAAATGCGATCCTTATCCTCAAAATTGGAATACAGACTGCTTATAAAGGGGTGTCCATTGAGATCTTTAGTCATAAACTCCAGAATCTTCTTTTCCCGAATAATAGCTCCCATTTTCTGGTGCTTCATCAAATGCTCTTTTTCAAGAACCTTGATGGCAAAAGTGGCATTGGTGCCCACTTCGCGGCATCGAAACACCTGGAAATAGTTACATTTAAAGGCGCATAACTTGATTAAGATTTGGAATTTAAAAAAAAATTCAAATTGGAAAATATTGGACTTGAAAAGAGCTACAAAATGATATAAAACGAGGCTAGGTTTGAAAGTTGGTAAGACATTTAAAATTGAAATTTCTAGAAGTATGGAAATCTGGAGTGTGGTCATGTTTTATATCATTCTGAAGCTCTTTTCGTGTTCTATATTTCTCATTTTGACTTTTTTGAAAATAATGATTTAAAGGGATTTAATGATTCAAAAACCGGAGGTGATCAGAACTACGCTCAAGAAAAGAATGTGTTATTAAAAGTTTTTGAAACAGGAAAACAAAAATTTCATAGTTCTTGCAAAAAGTTTACGAAT</canonical>
            <polymorphic>TTCGAAGTGACGCGGAGCCGAGCACTTAATACTGTGTCCTAGACATCTGTAACTAGTGGCCTAGGCTTTGGTTTTTCTAGGCCATCCTTTCTGAAAATGCTGATTTTTGTCAATCGTTTTTTGAAAAGTCGCATTTTTCAGATTTTCTGAAATTTCAACAAAAAAAGAAGGGGTGGGGTTACTGTAGGAATTTTTCTTGAAAAATTCTCATGTAATTGTCCGAATAAAAAACTTTCAAATCGGATTTTACGGGATTTTTTGGATTTTTCGAATTTTCATGAATTTTCAAACTAACTATTTTCAGAATTTTTTTTTGGATTTTTGGAAGTGAACTAAATACTTAATTTATGGATTTTAAGATATTTTTCAGACTTCAAAATTCCAAAAAAATCTTTAAAATCGAAAAAAAAAATCTAAACTTACAAATGCGATCCTTATCCTCAAAATTGGAATACAGACTGCTTATAAAGGGGTGTCCATTGAGATCTTTAGTCATAAAYTCCAGAATCTTCTTTTCCCGAATAATAGCTCCCATTTTCTGGTGCTTCATCAAATGCTCTTTTTCAAGAACCTTGATGGCAAAAGTGGCATTGGTGCCCACTTCGCGGCATCGAAACACCTGGAAATAGTTACATTTAAAGGCGCATAACTTGATTAAGATTTGGAATTTAAAAAAAAATTCAAATTGGAAAATATTGGACTTGAAAAGAGCTACAAAATGATATAAAACGAGGCTAGGTTTGAAAGTTGGTAAGACATTTAAAATTGAAATTTCTAGAAGTATGGAAATCTGGAGTGTGGTCATGTTTTATATCATTCTGAAGCTCTTTTCGTGTTCTATATTTCTCATTTTGACTTTTTTGAAAATAATGATTTAAAGGGATTTAATGATTCAAAAACCGGAGGTGATCAGAACTACGCTCAAGAAAAGAATGTGTTATTAAAAGTTTTTGAAACAGGAAAACAAAAATTTCATAGTTCTTGCAAAAAGTTTACGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGGATTTTTGGAAGTG</pcr_primer_p1>
		<pcr_primer_p2>AAGAGCATTTGATGAAGCAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGGATTTTTGGAAGTGAACTAAATACTTAATTTATGGATTTTAAGATATTTTTCAGACTTCAAAATTCCAAAAAAATCTTTAAAATCGAAAAAAAAAATCTAAACTTACAAATGCGATCCTTATCCTCAAAATTGGAATACAGACTGCTTATAAAGGGGTGTCCATTGAGATCTTTAGTCATAAACTCCAGAATCTTCTTTTCCCGAATAATAGCTCCCATTTTCTGGTGCTTCATCAAATGCTCTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGGATTTTTGGAAGTGAACTAAATACTTAATTTATGGATTTTAAGATATTTTTCAGACTTCAAAATTCCAAAAAAATCTTTAAAATCGAAAAAAAAAATCTAAACTTACAAATGCGATCCTTATCCTCAAAATTGGAATACAGACTGCTTATAAAGGGGTGTCCATTGAGATCTTTAGTCATAAAYTCCAGAATCTTCTTTTCCCGAATAATAGCTCCCATTTTCTGGTGCTTCATCAAATGCTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7898</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>113628</contig_pos>
        <strand>+</strand>
        <context>TAAAAGTAGA[C/T]GAAAAATTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTCAATGTACCCTTTTTTCGAGAAACTATATACGAGACTAAAAGTAGA</left_flank>
        <right_flank>GAAAAATTACTGTTTCAAAAATTCATGGAACATGAAAAAATCATCTCGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAATTCAAGGAAAAAAAATGATTAAACGAATTTGAAAAGAAAAACCCGAAAAATGTGTTTGAAGTCATTTGAAAGATGTAGAGAAACGAGACACACTGCGTCTCTAACCCAAAACTTCAAAGAACCACAATGCGGCTCAGAATGGTCGTAGAATCTTAATGCTTAACGTGTTTTGTAGGTAAAATTGGTAAATTTTTAAAACTATAATTCAACATGTTTTTCTGTTTCAAGAGATATTCGACTTTTCTGGACACAAATTTTTCGAAATTTCCAAAAAGCGCCATGATTCAGTTTAAAATTGTGCTTAAAAAGTTAATTTCTTGTTGGTTTTATTGGGGAATATTGATTTGAAATTTGGAAAATGATAATTTGATGGATTTTTGAAGAAGCACAAGAAATAGCTCAAGAATCTGCTTTTTCTTTTCCGTAATTCCGAAAAAACTGCTAGTTTCAATGTACCCTTTTTTCGAGAAACTATATACGAGACTAAAAGTAGATGAAAAATTACTGTTTCAAAAATTCATGGAACATGAAAAAATCATCTCGAGCCAATTTTTATCTTTTTGAAGTTTTGGGCTACAGAGATGCAGAGAAACGAGACACACTGCGTCTCTAGCCCCAAAACTTTTATAGGTAATGTGAAGTATTTTTCATACACTAATGATTCGAGAACTTGACAAGCAAATTTTGAGCCTGAAATTCATGTTCGGAGCGTTTTAGATTTGATTGTTTGAATTTTAATTTTTTCTAGTTTCATTTCGAGCCGAGATGTTTGAAGTTTTTCAGAGACGCAGAGAAGCGAGAGCACTCTTGTGCCTCTGCGTCTCTCACAGGAAACTTCAAATGGCTGTAACTCAGCTCGAAATGAAGCTAGAAACTTGGTTTTTAGAGAATTTTGTTCAGAAAAAATTGCTGTTTCATTAACAATAAGAAAGTTTCCCATGTTGACCATTTTCCACTGAAAAAGTTCAAAAATGACCCATTTTTTGCTCCCCAAT</canonical>
            <polymorphic>GAAAATTCAAGGAAAAAAAATGATTAAACGAATTTGAAAAGAAAAACCCGAAAAATGTGTTTGAAGTCATTTGAAAGATGTAGAGAAACGAGACACACTGCGTCTCTAACCCAAAACTTCAAAGAACCACAATGCGGCTCAGAATGGTCGTAGAATCTTAATGCTTAACGTGTTTTGTAGGTAAAATTGGTAAATTTTTAAAACTATAATTCAACATGTTTTTCTGTTTCAAGAGATATTCGACTTTTCTGGACACAAATTTTTCGAAATTTCCAAAAAGCGCCATGATTCAGTTTAAAATTGTGCTTAAAAAGTTAATTTCTTGTTGGTTTTATTGGGGAATATTGATTTGAAATTTGGAAAATGATAATTTGATGGATTTTTGAAGAAGCACAAGAAATAGCTCAAGAATCTGCTTTTTCTTTTCCGTAATTCCGAAAAAACTGCTAGTTTCAATGTACCCTTTTTTCGAGAAACTATATACGAGACTAAAAGTAGAYGAAAAATTACTGTTTCAAAAATTCATGGAACATGAAAAAATCATCTCGAGCCAATTTTTATCTTTTTGAAGTTTTGGGCTACAGAGATGCAGAGAAACGAGACACACTGCGTCTCTAGCCCCAAAACTTTTATAGGTAATGTGAAGTATTTTTCATACACTAATGATTCGAGAACTTGACAAGCAAATTTTGAGCCTGAAATTCATGTTCGGAGCGTTTTAGATTTGATTGTTTGAATTTTAATTTTTTCTAGTTTCATTTCGAGCCGAGATGTTTGAAGTTTTTCAGAGACGCAGAGAAGCGAGAGCACTCTTGTGCCTCTGCGTCTCTCACAGGAAACTTCAAATGGCTGTAACTCAGCTCGAAATGAAGCTAGAAACTTGGTTTTTAGAGAATTTTGTTCAGAAAAAATTGCTGTTTCATTAACAATAAGAAAGTTTCCCATGTTGACCATTTTCCACTGAAAAAGTTCAAAAATGACCCATTTTTTGCTCCCCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAGTTTCAATGTACCCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAAATTTGCTTGTCAAGTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GCTAGTTTCAATGTACCCTTTTTTCGAGAAACTATATACGAGACTAAAAGTAGATGAAAAATTACTGTTTCAAAAATTCATGGAACATGAAAAAATCATCTCGAGCCAATTTTTATCTTTTTGAAGTTTTGGGCTACAGAGATGCAGAGAAACGAGACACACTGCGTCTCTAGCCCCAAAACTTTTATAGGTAATGTGAAGTATTTTTCATACACTAATGATTCGAGAACTTGACAAGCAAATTTT</canonical_amplicon>
		<polymorphic_amplicon>GCTAGTTTCAATGTACCCTTTTTTCGAGAAACTATATACGAGACTAAAAGTAGAYGAAAAATTACTGTTTCAAAAATTCATGGAACATGAAAAAATCATCTCGAGCCAATTTTTATCTTTTTGAAGTTTTGGGCTACAGAGATGCAGAGAAACGAGACACACTGCGTCTCTAGCCCCAAAACTTTTATAGGTAATGTGAAGTATTTTTCATACACTAATGATTCGAGAACTTGACAAGCAAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7902</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>114518</contig_pos>
        <strand>+</strand>
        <context>TAAAGTTTTT[C/T]ACAATTCGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGATTAGTTAACAAATTTTGTTTTACTCAATTAAAGTATTTAAAGTTTTT</left_flank>
        <right_flank>ACAATTCGAATATTAAAATCAAGAAAAAAAATATTTCGAGAGTGAGCTAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAATTTTGTTCAGAAAAAATTGCTGTTTCATTAACAATAAGAAAGTTTCCCATGTTGACCATTTTCCACTGAAAAAGTTCAAAAATGACCCATTTTTTGCTCCCCAATACCAATTTTTGTCTATTTCAGAGCTCCAACCAATCACGTCGCCAGTAAATTGATCAAACATCTAATTGAAGAACTCGATGTGATGGGAGACGTTCTAGAATCTCATATTGTTCATTCCCTAGAAGTTCGGGAGAGATGTACGGAAGCTCTACAGGATGGGATTAGGATGAGAGAGGAGTTTGTGGAGAAAATGCGGGTGAGTTTTTTTTTTTTGAAAATCCAAATTTCAAGTAGTTTGGTAGTTTCAAAGAATTGTAAAAAATTCGGTTTTTTTTAAATGTGAATGTACAAAAATTTACTGTTTCAAATCAAAAATTTGTAATTTTCCCTGTTTCTAACTGATTAGTTAACAAATTTTGTTTTACTCAATTAAAGTATTTAAAGTTTTTTACAATTCGAATATTAAAATCAAGAAAAAAAATATTTCGAGAGTGAGCTAGCTACACGATCGCAAACTTTTTGACTTTGTCCCTTTTTATCTCCGTTACTGTAAGAGGTATCATTAAGTTGTCAACTAAGAAAATGTTTATCATAATATCGGCAAGATTTTATCAGTTGATCACTTTTTGATATCTCTCCCGGTTACCAAGATAACTGAGCTCAAAGGGAAGAATGCCATACTCGCTAGACAACTTTGTTGCAAATTTCATCCACGACTTTGACCCAATTTATCTCTGTTACTGTAAGAGATATCAAACAGTTGTCAACTAGTAAAATGTTTATCATAACATCAGCAACATTTTATCAATTGACACGTTTTGGATTTCTTGTACAGTAACCGAGAACAGTGAGGTTAAAGGTGCAGCTACGCGCTTGCAAACTCGACCCACGACTTTGACCCTAGTTATCTAGGTTACTGTAAGAGACATCAACAAGTTGTCAACTAATGA</canonical>
            <polymorphic>GAGAATTTTGTTCAGAAAAAATTGCTGTTTCATTAACAATAAGAAAGTTTCCCATGTTGACCATTTTCCACTGAAAAAGTTCAAAAATGACCCATTTTTTGCTCCCCAATACCAATTTTTGTCTATTTCAGAGCTCCAACCAATCACGTCGCCAGTAAATTGATCAAACATCTAATTGAAGAACTCGATGTGATGGGAGACGTTCTAGAATCTCATATTGTTCATTCCCTAGAAGTTCGGGAGAGATGTACGGAAGCTCTACAGGATGGGATTAGGATGAGAGAGGAGTTTGTGGAGAAAATGCGGGTGAGTTTTTTTTTTTTGAAAATCCAAATTTCAAGTAGTTTGGTAGTTTCAAAGAATTGTAAAAAATTCGGTTTTTTTTAAATGTGAATGTACAAAAATTTACTGTTTCAAATCAAAAATTTGTAATTTTCCCTGTTTCTAACTGATTAGTTAACAAATTTTGTTTTACTCAATTAAAGTATTTAAAGTTTTTYACAATTCGAATATTAAAATCAAGAAAAAAAATATTTCGAGAGTGAGCTAGCTACACGATCGCAAACTTTTTGACTTTGTCCCTTTTTATCTCCGTTACTGTAAGAGGTATCATTAAGTTGTCAACTAAGAAAATGTTTATCATAATATCGGCAAGATTTTATCAGTTGATCACTTTTTGATATCTCTCCCGGTTACCAAGATAACTGAGCTCAAAGGGAAGAATGCCATACTCGCTAGACAACTTTGTTGCAAATTTCATCCACGACTTTGACCCAATTTATCTCTGTTACTGTAAGAGATATCAAACAGTTGTCAACTAGTAAAATGTTTATCATAACATCAGCAACATTTTATCAATTGACACGTTTTGGATTTCTTGTACAGTAACCGAGAACAGTGAGGTTAAAGGTGCAGCTACGCGCTTGCAAACTCGACCCACGACTTTGACCCTAGTTATCTAGGTTACTGTAAGAGACATCAACAAGTTGTCAACTAATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAGTAGTTTGGTAGTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>GTAGCTAGCTCACTCTCGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>220</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAGTAGTTTGGTAGTTTCAAAGAATTGTAAAAAATTCGGTTTTTTTTAAATGTGAATGTACAAAAATTTACTGTTTCAAATCAAAAATTTGTAATTTTCCCTGTTTCTAACTGATTAGTTAACAAATTTTGTTTTACTCAATTAAAGTATTTAAAGTTTTTTACAATTCGAATATTAAAATCAAGAAAAAAAATATTTCGAGAGTGAGCTAGCTAC</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAGTAGTTTGGTAGTTTCAAAGAATTGTAAAAAATTCGGTTTTTTTTAAATGTGAATGTACAAAAATTTACTGTTTCAAATCAAAAATTTGTAATTTTCCCTGTTTCTAACTGATTAGTTAACAAATTTTGTTTTACTCAATTAAAGTATTTAAAGTTTTTYACAATTCGAATATTAAAATCAAGAAAAAAAATATTTCGAGAGTGAGCTAGCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7903</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>114424</contig_pos>
        <strand></strand>
        <context>GTACAAAAAT[T/G]TACTGTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CAAAGAATTGTAAAAAATTCGGTTTTTTTTAAATGTGAATGTACAAAAAT</left_flank>
        <right_flank>TACTGTTTCAAATCAAAAATTTGTAATTTTCCCTGTTTCTAACTGATTAG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAGCGAGAGCACTCTTGTGCCTCTGCGTCTCTCACAGGAAACTTCAAATGGCTGTAACTCAGCTCGAAATGAAGCTAGAAACTTGGTTTTTAGAGAATTTTGTTCAGAAAAAATTGCTGTTTCATTAACAATAAGAAAGTTTCCCATGTTGACCATTTTCCACTGAAAAAGTTCAAAAATGACCCATTTTTTGCTCCCCAATACCAATTTTTGTCTATTTCAGAGCTCCAACCAATCACGTCGCCAGTAAATTGATCAAACATCTAATTGAAGAACTCGATGTGATGGGAGACGTTCTAGAATCTCATATTGTTCATTCCCTAGAAGTTCGGGAGAGATGTACGGAAGCTCTACAGGATGGGATTAGGATGAGAGAGGAGTTTGTGGAGAAAATGCGGGTGAGTTTTTTTTTTTTGAAAATCCAAATTTCAAGTAGTTTGGTAGTTTCAAAGAATTGTAAAAAATTCGGTTTTTTTTAAATGTGAATGTACAAAAATTTACTGTTTCAAATCAAAAATTTGTAATTTTCCCTGTTTCTAACTGATTAGTTAACAAATTTTGTTTTACTCAATTAAAGTATTTAAAGTTTTTTACAATTCGAATATTAAAATCAAGAAAAAAAATATTTCGAGAGTGAGCTAGCTACACGATCGCAAACTTTTTGACTTTGTCCCTTTTTATCTCCGTTACTGTAAGAGGTATCATTAAGTTGTCAACTAAGAAAATGTTTATCATAATATCGGCAAGATTTTATCAGTTGATCACTTTTTGATATCTCTCCCGGTTACCAAGATAACTGAGCTCAAAGGGAAGAATGCCATACTCGCTAGACAACTTTGTTGCAAATTTCATCCACGACTTTGACCCAATTTATCTCTGTTACTGTAAGAGATATCAAACAGTTGTCAACTAGTAAAATGTTTATCATAACATCAGCAACATTTTATCAATTGACACGTTTTGGATTTCTTGTACAGTAACCGAGAACAGTGAGGTTA</canonical>
            <polymorphic>AGAAGCGAGAGCACTCTTGTGCCTCTGCGTCTCTCACAGGAAACTTCAAATGGCTGTAACTCAGCTCGAAATGAAGCTAGAAACTTGGTTTTTAGAGAATTTTGTTCAGAAAAAATTGCTGTTTCATTAACAATAAGAAAGTTTCCCATGTTGACCATTTTCCACTGAAAAAGTTCAAAAATGACCCATTTTTTGCTCCCCAATACCAATTTTTGTCTATTTCAGAGCTCCAACCAATCACGTCGCCAGTAAATTGATCAAACATCTAATTGAAGAACTCGATGTGATGGGAGACGTTCTAGAATCTCATATTGTTCATTCCCTAGAAGTTCGGGAGAGATGTACGGAAGCTCTACAGGATGGGATTAGGATGAGAGAGGAGTTTGTGGAGAAAATGCGGGTGAGTTTTTTTTTTTTGAAAATCCAAATTTCAAGTAGTTTGGTAGTTTCAAAGAATTGTAAAAAATTCGGTTTTTTTTAAATGTGAATGTACAAAAATKTACTGTTTCAAATCAAAAATTTGTAATTTTCCCTGTTTCTAACTGATTAGTTAACAAATTTTGTTTTACTCAATTAAAGTATTTAAAGTTTTTTACAATTCGAATATTAAAATCAAGAAAAAAAATATTTCGAGAGTGAGCTAGCTACACGATCGCAAACTTTTTGACTTTGTCCCTTTTTATCTCCGTTACTGTAAGAGGTATCATTAAGTTGTCAACTAAGAAAATGTTTATCATAATATCGGCAAGATTTTATCAGTTGATCACTTTTTGATATCTCTCCCGGTTACCAAGATAACTGAGCTCAAAGGGAAGAATGCCATACTCGCTAGACAACTTTGTTGCAAATTTCATCCACGACTTTGACCCAATTTATCTCTGTTACTGTAAGAGATATCAAACAGTTGTCAACTAGTAAAATGTTTATCATAACATCAGCAACATTTTATCAATTGACACGTTTTGGATTTCTTGTACAGTAACCGAGAACAGTGAGGTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>329 290 154 97 39 38 32 21</canonical_bands>
                <polymorphic_bands>329 290 154 97 53 39 38</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>250 159 97 94 81 50 44 32 32 28 25 23 21 16 16 15 10 7</canonical_bands>
                <polymorphic_bands>250 159 97 94 81 53 50 44 32 28 25 23 16 16 15 10 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAGTAGTTTGGTAGTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>GTAGCTAGCTCACTCTCGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>220</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAGTAGTTTGGTAGTTTCAAAGAATTGTAAAAAATTCGGTTTTTTTTAAATGTGAATGTACAAAAATTTACTGTTTCAAATCAAAAATTTGTAATTTTCCCTGTTTCTAACTGATTAGTTAACAAATTTTGTTTTACTCAATTAAAGTATTTAAAGTTTTTTACAATTCGAATATTAAAATCAAGAAAAAAAATATTTCGAGAGTGAGCTAGCTAC</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAGTAGTTTGGTAGTTTCAAAGAATTGTAAAAAATTCGGTTTTTTTTAAATGTGAATGTACAAAAATKTACTGTTTCAAATCAAAAATTTGTAATTTTCCCTGTTTCTAACTGATTAGTTAACAAATTTTGTTTTACTCAATTAAAGTATTTAAAGTTTTTTACAATTCGAATATTAAAATCAAGAAAAAAAATATTTCGAGAGTGAGCTAGCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7904</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>114825</contig_pos>
        <strand></strand>
        <context>gagatatcaa[A/G]cagttgtcaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATCCACGACTTTGACCCAATTTATCTCTGTTACTGTAAGAGATATCAA</left_flank>
        <right_flank>CAGTTGTCAACTAGTAAAATGTTTATCATAACATCAGCAACATTTTATCA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGTTTTTTTTTTTTGAAAATCCAAATTTCAAGTAGTTTGGTAGTTTCAAAGAATTGTAAAAAATTCGGTTTTTTTTAAATGTGAATGTACAAAAATTTACTGTTTCAAATCAAAAATTTGTAATTTTCCCTGTTTCTAACTGATTAGTTAACAAATTTTGTTTTACTCAATTAAAGTATTTAAAGTTTTTTACAATTCGAATATTAAAATCAAGAAAAAAAATATTTCGAGAGTGAGCTAGCTACACGATCGCAAACTTTTTGACTTTGTCCCTTTTTATCTCCGTTACTGTAAGAGGTATCATTAAGTTGTCAACTAAGAAAATGTTTATCATAATATCGGCAAGATTTTATCAGTTGATCACTTTTTGATATCTCTCCCGGTTACCAAGATAACTGAGCTCAAAGGGAAGAATGCCATACTCGCTAGACAACTTTGTTGCAAATTTCATCCACGACTTTGACCCAATTTATCTCTGTTACTGTAAGAGATATCAAACAGTTGTCAACTAGTAAAATGTTTATCATAACATCAGCAACATTTTATCAATTGACACGTTTTGGATTTCTTGTACAGTAACCGAGAACAGTGAGGTTAAAGGTGCAGCTACGCGCTTGCAAACTCGACCCACGACTTTGACCCTAGTTATCTAGGTTACTGTAAGAGACATCAACAAGTTGTCAACTAATGAAATGTTTATCATATTATCAGAAATATTTTATTAATTGACTATTTTTTGATATCTCTGACAGTAAACGAGATAAGGAGGGTCGAATTAAAAGGTGCCGATACAAGTCTTGCAAATTCGATCCACGACTTTGTTTATCTCGGCTACTGTTAAAAATATCAAAAAGTAGTCAACTGATAAAATTTTCAGCATTTTATTACCAAAATTTCATCATTCGACAAATTTCTGATAGCTCTAACATAAACCAAGATAATTGACCGCAAAATGGGGAACAGTTTTACAAGATTTCCTGTTGCAAACTCGAACTACG</canonical>
            <polymorphic>TGAGTTTTTTTTTTTTGAAAATCCAAATTTCAAGTAGTTTGGTAGTTTCAAAGAATTGTAAAAAATTCGGTTTTTTTTAAATGTGAATGTACAAAAATTTACTGTTTCAAATCAAAAATTTGTAATTTTCCCTGTTTCTAACTGATTAGTTAACAAATTTTGTTTTACTCAATTAAAGTATTTAAAGTTTTTTACAATTCGAATATTAAAATCAAGAAAAAAAATATTTCGAGAGTGAGCTAGCTACACGATCGCAAACTTTTTGACTTTGTCCCTTTTTATCTCCGTTACTGTAAGAGGTATCATTAAGTTGTCAACTAAGAAAATGTTTATCATAATATCGGCAAGATTTTATCAGTTGATCACTTTTTGATATCTCTCCCGGTTACCAAGATAACTGAGCTCAAAGGGAAGAATGCCATACTCGCTAGACAACTTTGTTGCAAATTTCATCCACGACTTTGACCCAATTTATCTCTGTTACTGTAAGAGATATCAARCAGTTGTCAACTAGTAAAATGTTTATCATAACATCAGCAACATTTTATCAATTGACACGTTTTGGATTTCTTGTACAGTAACCGAGAACAGTGAGGTTAAAGGTGCAGCTACGCGCTTGCAAACTCGACCCACGACTTTGACCCTAGTTATCTAGGTTACTGTAAGAGACATCAACAAGTTGTCAACTAATGAAATGTTTATCATATTATCAGAAATATTTTATTAATTGACTATTTTTTGATATCTCTGACAGTAAACGAGATAAGGAGGGTCGAATTAAAAGGTGCCGATACAAGTCTTGCAAATTCGATCCACGACTTTGTTTATCTCGGCTACTGTTAAAAATATCAAAAAGTAGTCAACTGATAAAATTTTCAGCATTTTATTACCAAAATTTCATCATTCGACAAATTTCTGATAGCTCTAACATAAACCAAGATAATTGACCGCAAAATGGGGAACAGTTTTACAAGATTTCCTGTTGCAAACTCGAACTACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>193 189 126 103 92 85 75 71 36 17 13</canonical_bands>
                <polymorphic_bands>193 189 126 103 92 92 85 71 36 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGCCATACTCGCTAGACA</pcr_primer_p1>
		<pcr_primer_p2>GAATTTGCAAGACTTGTATCG</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>AATGCCATACTCGCTAGACAACTTTGTTGCAAATTTCATCCACGACTTTGACCCAATTTATCTCTGTTACTGTAAGAGATATCAAACAGTTGTCAACTAGTAAAATGTTTATCATAACATCAGCAACATTTTATCAATTGACACGTTTTGGATTTCTTGTACAGTAACCGAGAACAGTGAGGTTAAAGGTGCAGCTACGCGCTTGCAAACTCGACCCACGACTTTGACCCTAGTTATCTAGGTTACTGTAAGAGACATCAACAAGTTGTCAACTAATGAAATGTTTATCATATTATCAGAAATATTTTATTAATTGACTATTTTTTGATATCTCTGACAGTAAACGAGATAAGGAGGGTCGAATTAAAAGGTGCCGATACAAGTCTTGCAAATTC</canonical_amplicon>
		<polymorphic_amplicon>AATGCCATACTCGCTAGACAACTTTGTTGCAAATTTCATCCACGACTTTGACCCAATTTATCTCTGTTACTGTAAGAGATATCAARCAGTTGTCAACTAGTAAAATGTTTATCATAACATCAGCAACATTTTATCAATTGACACGTTTTGGATTTCTTGTACAGTAACCGAGAACAGTGAGGTTAAAGGTGCAGCTACGCGCTTGCAAACTCGACCCACGACTTTGACCCTAGTTATCTAGGTTACTGTAAGAGACATCAACAAGTTGTCAACTAATGAAATGTTTATCATATTATCAGAAATATTTTATTAATTGACTATTTTTTGATATCTCTGACAGTAAACGAGATAAGGAGGGTCGAATTAAAAGGTGCCGATACAAGTCTTGCAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7905</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>114762</contig_pos>
        <strand>+</strand>
        <context>GCTAGACAAC[G/T]TTGTTGCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TACCAAGATAACTGAGCTCAAAGGGAAGAATGCCATACTCGCTAGACAAC</left_flank>
        <right_flank>TTGTTGCAAATTTCATCCACGACTTTGACCCAATTTATCTCTGTTACTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGTACGGAAGCTCTACAGGATGGGATTAGGATGAGAGAGGAGTTTGTGGAGAAAATGCGGGTGAGTTTTTTTTTTTTGAAAATCCAAATTTCAAGTAGTTTGGTAGTTTCAAAGAATTGTAAAAAATTCGGTTTTTTTTAAATGTGAATGTACAAAAATTTACTGTTTCAAATCAAAAATTTGTAATTTTCCCTGTTTCTAACTGATTAGTTAACAAATTTTGTTTTACTCAATTAAAGTATTTAAAGTTTTTTACAATTCGAATATTAAAATCAAGAAAAAAAATATTTCGAGAGTGAGCTAGCTACACGATCGCAAACTTTTTGACTTTGTCCCTTTTTATCTCCGTTACTGTAAGAGGTATCATTAAGTTGTCAACTAAGAAAATGTTTATCATAATATCGGCAAGATTTTATCAGTTGATCACTTTTTGATATCTCTCCCGGTTACCAAGATAACTGAGCTCAAAGGGAAGAATGCCATACTCGCTAGACAACTTTGTTGCAAATTTCATCCACGACTTTGACCCAATTTATCTCTGTTACTGTAAGAGATATCAAACAGTTGTCAACTAGTAAAATGTTTATCATAACATCAGCAACATTTTATCAATTGACACGTTTTGGATTTCTTGTACAGTAACCGAGAACAGTGAGGTTAAAGGTGCAGCTACGCGCTTGCAAACTCGACCCACGACTTTGACCCTAGTTATCTAGGTTACTGTAAGAGACATCAACAAGTTGTCAACTAATGAAATGTTTATCATATTATCAGAAATATTTTATTAATTGACTATTTTTTGATATCTCTGACAGTAAACGAGATAAGGAGGGTCGAATTAAAAGGTGCCGATACAAGTCTTGCAAATTCGATCCACGACTTTGTTTATCTCGGCTACTGTTAAAAATATCAAAAAGTAGTCAACTGATAAAATTTTCAGCATTTTATTACCAAAATTTCATCATTCGACAAATTTCTGATAGCTCTAACATAAACCA</canonical>
            <polymorphic>GATGTACGGAAGCTCTACAGGATGGGATTAGGATGAGAGAGGAGTTTGTGGAGAAAATGCGGGTGAGTTTTTTTTTTTTGAAAATCCAAATTTCAAGTAGTTTGGTAGTTTCAAAGAATTGTAAAAAATTCGGTTTTTTTTAAATGTGAATGTACAAAAATTTACTGTTTCAAATCAAAAATTTGTAATTTTCCCTGTTTCTAACTGATTAGTTAACAAATTTTGTTTTACTCAATTAAAGTATTTAAAGTTTTTTACAATTCGAATATTAAAATCAAGAAAAAAAATATTTCGAGAGTGAGCTAGCTACACGATCGCAAACTTTTTGACTTTGTCCCTTTTTATCTCCGTTACTGTAAGAGGTATCATTAAGTTGTCAACTAAGAAAATGTTTATCATAATATCGGCAAGATTTTATCAGTTGATCACTTTTTGATATCTCTCCCGGTTACCAAGATAACTGAGCTCAAAGGGAAGAATGCCATACTCGCTAGACAACKTTGTTGCAAATTTCATCCACGACTTTGACCCAATTTATCTCTGTTACTGTAAGAGATATCAAACAGTTGTCAACTAGTAAAATGTTTATCATAACATCAGCAACATTTTATCAATTGACACGTTTTGGATTTCTTGTACAGTAACCGAGAACAGTGAGGTTAAAGGTGCAGCTACGCGCTTGCAAACTCGACCCACGACTTTGACCCTAGTTATCTAGGTTACTGTAAGAGACATCAACAAGTTGTCAACTAATGAAATGTTTATCATATTATCAGAAATATTTTATTAATTGACTATTTTTTGATATCTCTGACAGTAAACGAGATAAGGAGGGTCGAATTAAAAGGTGCCGATACAAGTCTTGCAAATTCGATCCACGACTTTGTTTATCTCGGCTACTGTTAAAAATATCAAAAAGTAGTCAACTGATAAAATTTTCAGCATTTTATTACCAAAATTTCATCATTCGACAAATTTCTGATAGCTCTAACATAAACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATATTTCGAGAGTGAGCTA</pcr_primer_p1>
		<pcr_primer_p2>GAATTTGCAAGACTTGTATCG</pcr_primer_p2>
		<pcr_amplicon_size>590</pcr_amplicon_size>
		<canonical_amplicon>AAAAATATTTCGAGAGTGAGCTAGCTACACGATCGCAAACTTTTTGACTTTGTCCCTTTTTATCTCCGTTACTGTAAGAGGTATCATTAAGTTGTCAACTAAGAAAATGTTTATCATAATATCGGCAAGATTTTATCAGTTGATCACTTTTTGATATCTCTCCCGGTTACCAAGATAACTGAGCTCAAAGGGAAGAATGCCATACTCGCTAGACAACTTTGTTGCAAATTTCATCCACGACTTTGACCCAATTTATCTCTGTTACTGTAAGAGATATCAAACAGTTGTCAACTAGTAAAATGTTTATCATAACATCAGCAACATTTTATCAATTGACACGTTTTGGATTTCTTGTACAGTAACCGAGAACAGTGAGGTTAAAGGTGCAGCTACGCGCTTGCAAACTCGACCCACGACTTTGACCCTAGTTATCTAGGTTACTGTAAGAGACATCAACAAGTTGTCAACTAATGAAATGTTTATCATATTATCAGAAATATTTTATTAATTGACTATTTTTTGATATCTCTGACAGTAAACGAGATAAGGAGGGTCGAATTAAAAGGTGCCGATACAAGTCTTGCAAATTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATATTTCGAGAGTGAGCTAGCTACACGATCGCAAACTTTTTGACTTTGTCCCTTTTTATCTCCGTTACTGTAAGAGGTATCATTAAGTTGTCAACTAAGAAAATGTTTATCATAATATCGGCAAGATTTTATCAGTTGATCACTTTTTGATATCTCTCCCGGTTACCAAGATAACTGAGCTCAAAGGGAAGAATGCCATACTCGCTAGACAACKTTGTTGCAAATTTCATCCACGACTTTGACCCAATTTATCTCTGTTACTGTAAGAGATATCAAACAGTTGTCAACTAGTAAAATGTTTATCATAACATCAGCAACATTTTATCAATTGACACGTTTTGGATTTCTTGTACAGTAACCGAGAACAGTGAGGTTAAAGGTGCAGCTACGCGCTTGCAAACTCGACCCACGACTTTGACCCTAGTTATCTAGGTTACTGTAAGAGACATCAACAAGTTGTCAACTAATGAAATGTTTATCATATTATCAGAAATATTTTATTAATTGACTATTTTTTGATATCTCTGACAGTAAACGAGATAAGGAGGGTCGAATTAAAAGGTGCCGATACAAGTCTTGCAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7906</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>63531</contig_pos>
        <strand>+</strand>
        <context>CGGGGTATTG[C/T]GATAATACAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTTTGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTG</left_flank>
        <right_flank>GATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTACGCAAGCCAATAGGAATGCTCATTTTCAATGCTGCATCGACGTGTATTTGAAAATAATTCCTCAATATTCAGAATTGGCAGACAGACGTGTGGGCGTGTACTAGAAAAAAATCAAGTCTCACTATTGCCGTCGCCGCCGCAACACACAACTGGCGCAATCAATCCCCCAACCACCGGAATGGGAGCTCATGCGCTGCGCGGCTCGTGGAGCTTGCGCTCGTTCGTGTCGTCATACACCGGTTGTGGTGCGCCTTGTGTGTGTGTGAACAGCAAAATAATATGGTTTTTTGGTCGGGGCCGTGCTAAGCTTGATAATCGAGGCGGCTAACTGGCCGTGAAAAAATGCAAATAGCTGGTAGGCACACCTGGGCTCGAAGAATTACTTGTTGGTGTTGACTTTCACGTCATTTCATAATGGTTTTTTTGCTTAATAGGGTAGAGAATCTGTTTGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGAT</canonical>
            <polymorphic>ATTACGCAAGCCAATAGGAATGCTCATTTTCAATGCTGCATCGACGTGTATTTGAAAATAATTCCTCAATATTCAGAATTGGCAGACAGACGTGTGGGCGTGTACTAGAAAAAAATCAAGTCTCACTATTGCCGTCGCCGCCGCAACACACAACTGGCGCAATCAATCCCCCAACCACCGGAATGGGAGCTCATGCGCTGCGCGGCTCGTGGAGCTTGCGCTCGTTCGTGTCGTCATACACCGGTTGTGGTGCGCCTTGTGTGTGTGTGAACAGCAAAATAATATGGTTTTTTGGTCGGGGCCGTGCTAAGCTTGATAATCGAGGCGGCTAACTGGCCGTGAAAAAATGCAAATAGCTGGTAGGCACACCTGGGCTCGAAGAATTACTTGTTGGTGTTGACTTTCACGTCATTTCATAATGGTTTTTTTGCTTAATAGGGTAGAGAATCTGTTTGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGYGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>132 101 81 64 64 64 48 46 37 35 34 31 29 28 27 25 23 23 19 19 10 10 9 9 6 5 3 2 2 2 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>132 101 95 81 64 64 48 46 37 35 34 29 28 27 25 23 23 19 19 10 10 9 9 6 5 3 2 2 2 2 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTGTTTGCATGAGATTGTAGT</pcr_primer_p1>
		<pcr_primer_p2>GTCTAAAACCAACAAATAAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>338</pcr_amplicon_size>
		<canonical_amplicon>ATCTGTTTGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGAC</canonical_amplicon>
		<polymorphic_amplicon>ATCTGTTTGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGYGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7907</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>63554</contig_pos>
        <strand>+</strand>
        <context>GAATGGGCAG[G/T]TTTCCAACTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAG</left_flank>
        <right_flank>TTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATTTTCAATGCTGCATCGACGTGTATTTGAAAATAATTCCTCAATATTCAGAATTGGCAGACAGACGTGTGGGCGTGTACTAGAAAAAAATCAAGTCTCACTATTGCCGTCGCCGCCGCAACACACAACTGGCGCAATCAATCCCCCAACCACCGGAATGGGAGCTCATGCGCTGCGCGGCTCGTGGAGCTTGCGCTCGTTCGTGTCGTCATACACCGGTTGTGGTGCGCCTTGTGTGTGTGTGAACAGCAAAATAATATGGTTTTTTGGTCGGGGCCGTGCTAAGCTTGATAATCGAGGCGGCTAACTGGCCGTGAAAAAATGCAAATAGCTGGTAGGCACACCTGGGCTCGAAGAATTACTTGTTGGTGTTGACTTTCACGTCATTTCATAATGGTTTTTTTGCTTAATAGGGTAGAGAATCTGTTTGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAA</canonical>
            <polymorphic>TCATTTTCAATGCTGCATCGACGTGTATTTGAAAATAATTCCTCAATATTCAGAATTGGCAGACAGACGTGTGGGCGTGTACTAGAAAAAAATCAAGTCTCACTATTGCCGTCGCCGCCGCAACACACAACTGGCGCAATCAATCCCCCAACCACCGGAATGGGAGCTCATGCGCTGCGCGGCTCGTGGAGCTTGCGCTCGTTCGTGTCGTCATACACCGGTTGTGGTGCGCCTTGTGTGTGTGTGAACAGCAAAATAATATGGTTTTTTGGTCGGGGCCGTGCTAAGCTTGATAATCGAGGCGGCTAACTGGCCGTGAAAAAATGCAAATAGCTGGTAGGCACACCTGGGCTCGAAGAATTACTTGTTGGTGTTGACTTTCACGTCATTTCATAATGGTTTTTTTGCTTAATAGGGTAGAGAATCTGTTTGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGKTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCATGAGATTGTAGTGTAATGT</pcr_primer_p1>
		<pcr_primer_p2>GTCTAAAACCAACAAATAAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>331</pcr_amplicon_size>
		<canonical_amplicon>TGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGAC</canonical_amplicon>
		<polymorphic_amplicon>TGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGKTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7908</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>63566</contig_pos>
        <strand>+</strand>
        <context>TTCCAACTCC[A/T]AAMATATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCC</left_flank>
        <right_flank>AACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGCATCGACGTGTATTTGAAAATAATTCCTCAATATTCAGAATTGGCAGACAGACGTGTGGGCGTGTACTAGAAAAAAATCAAGTCTCACTATTGCCGTCGCCGCCGCAACACACAACTGGCGCAATCAATCCCCCAACCACCGGAATGGGAGCTCATGCGCTGCGCGGCTCGTGGAGCTTGCGCTCGTTCGTGTCGTCATACACCGGTTGTGGTGCGCCTTGTGTGTGTGTGAACAGCAAAATAATATGGTTTTTTGGTCGGGGCCGTGCTAAGCTTGATAATCGAGGCGGCTAACTGGCCGTGAAAAAATGCAAATAGCTGGTAGGCACACCTGGGCTCGAAGAATTACTTGTTGGTGTTGACTTTCACGTCATTTCATAATGGTTTTTTTGCTTAATAGGGTAGAGAATCTGTTTGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGAC</canonical>
            <polymorphic>CTGCATCGACGTGTATTTGAAAATAATTCCTCAATATTCAGAATTGGCAGACAGACGTGTGGGCGTGTACTAGAAAAAAATCAAGTCTCACTATTGCCGTCGCCGCCGCAACACACAACTGGCGCAATCAATCCCCCAACCACCGGAATGGGAGCTCATGCGCTGCGCGGCTCGTGGAGCTTGCGCTCGTTCGTGTCGTCATACACCGGTTGTGGTGCGCCTTGTGTGTGTGTGAACAGCAAAATAATATGGTTTTTTGGTCGGGGCCGTGCTAAGCTTGATAATCGAGGCGGCTAACTGGCCGTGAAAAAATGCAAATAGCTGGTAGGCACACCTGGGCTCGAAGAATTACTTGTTGGTGTTGACTTTCACGTCATTTCATAATGGTTTTTTTGCTTAATAGGGTAGAGAATCTGTTTGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCWAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCATGAGATTGTAGTGTAATGT</pcr_primer_p1>
		<pcr_primer_p2>GTCTAAAACCAACAAATAAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>331</pcr_amplicon_size>
		<canonical_amplicon>TGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGAC</canonical_amplicon>
		<polymorphic_amplicon>TGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCWAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7909</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>63569</contig_pos>
        <strand>+</strand>
        <context>CAACTCCWAA[A/C]ATATTTTTAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAA</left_flank>
        <right_flank>ATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCGACGTGTATTTGAAAATAATTCCTCAATATTCAGAATTGGCAGACAGACGTGTGGGCGTGTACTAGAAAAAAATCAAGTCTCACTATTGCCGTCGCCGCCGCAACACACAACTGGCGCAATCAATCCCCCAACCACCGGAATGGGAGCTCATGCGCTGCGCGGCTCGTGGAGCTTGCGCTCGTTCGTGTCGTCATACACCGGTTGTGGTGCGCCTTGTGTGTGTGTGAACAGCAAAATAATATGGTTTTTTGGTCGGGGCCGTGCTAAGCTTGATAATCGAGGCGGCTAACTGGCCGTGAAAAAATGCAAATAGCTGGTAGGCACACCTGGGCTCGAAGAATTACTTGTTGGTGTTGACTTTCACGTCATTTCATAATGGTTTTTTTGCTTAATAGGGTAGAGAATCTGTTTGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATG</canonical>
            <polymorphic>CATCGACGTGTATTTGAAAATAATTCCTCAATATTCAGAATTGGCAGACAGACGTGTGGGCGTGTACTAGAAAAAAATCAAGTCTCACTATTGCCGTCGCCGCCGCAACACACAACTGGCGCAATCAATCCCCCAACCACCGGAATGGGAGCTCATGCGCTGCGCGGCTCGTGGAGCTTGCGCTCGTTCGTGTCGTCATACACCGGTTGTGGTGCGCCTTGTGTGTGTGTGAACAGCAAAATAATATGGTTTTTTGGTCGGGGCCGTGCTAAGCTTGATAATCGAGGCGGCTAACTGGCCGTGAAAAAATGCAAATAGCTGGTAGGCACACCTGGGCTCGAAGAATTACTTGTTGGTGTTGACTTTCACGTCATTTCATAATGGTTTTTTTGCTTAATAGGGTAGAGAATCTGTTTGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAAMATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCATGAGATTGTAGTGTAATGT</pcr_primer_p1>
		<pcr_primer_p2>GTCTAAAACCAACAAATAAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>331</pcr_amplicon_size>
		<canonical_amplicon>TGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGAC</canonical_amplicon>
		<polymorphic_amplicon>TGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAAMATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7910</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>63787</contig_pos>
        <strand></strand>
        <context>CTAAAAAATC[T/C]CAAAAACCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATC</left_flank>
        <right_flank>CAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTGTGTGTGTGAACAGCAAAATAATATGGTTTTTTGGTCGGGGCCGTGCTAAGCTTGATAATCGAGGCGGCTAACTGGCCGTGAAAAAATGCAAATAGCTGGTAGGCACACCTGGGCTCGAAGAATTACTTGTTGGTGTTGACTTTCACGTCATTTCATAATGGTTTTTTTGCTTAATAGGGTAGAGAATCTGTTTGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCTCAGAACAGAACGGAAGAAAATTGTGGCAAAAGTAGGGACCCGTAAAAGAAATGAGAGTCAAAAAAGAATATAAAGTTTTTACTTATAGTAGAACATATCCTGGTCCGTGTACTCATCTGACGTGGGATAATTTCGATGGTGTTGAACCTCTAGCGTTCGATAACCACCATTGTATATCG</canonical>
            <polymorphic>TTGTGTGTGTGTGAACAGCAAAATAATATGGTTTTTTGGTCGGGGCCGTGCTAAGCTTGATAATCGAGGCGGCTAACTGGCCGTGAAAAAATGCAAATAGCTGGTAGGCACACCTGGGCTCGAAGAATTACTTGTTGGTGTTGACTTTCACGTCATTTCATAATGGTTTTTTTGCTTAATAGGGTAGAGAATCTGTTTGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCYCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCTCAGAACAGAACGGAAGAAAATTGTGGCAAAAGTAGGGACCCGTAAAAGAAATGAGAGTCAAAAAAGAATATAAAGTTTTTACTTATAGTAGAACATATCCTGGTCCGTGTACTCATCTGACGTGGGATAATTTCGATGGTGTTGAACCTCTAGCGTTCGATAACCACCATTGTATATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCATGAGATTGTAGTGTAATGT</pcr_primer_p1>
		<pcr_primer_p2>GTCATGGATTGAGCTTAACTG</pcr_primer_p2>
		<pcr_amplicon_size>459</pcr_amplicon_size>
		<canonical_amplicon>TGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGAC</canonical_amplicon>
		<polymorphic_amplicon>TGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCYCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7911</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>63816</contig_pos>
        <strand>+</strand>
        <context>GGTTTTAGAC[C/T]AAATTTTCCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGAC</left_flank>
        <right_flank>AAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTTTTTGGTCGGGGCCGTGCTAAGCTTGATAATCGAGGCGGCTAACTGGCCGTGAAAAAATGCAAATAGCTGGTAGGCACACCTGGGCTCGAAGAATTACTTGTTGGTGTTGACTTTCACGTCATTTCATAATGGTTTTTTTGCTTAATAGGGTAGAGAATCTGTTTGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCTCAGAACAGAACGGAAGAAAATTGTGGCAAAAGTAGGGACCCGTAAAAGAAATGAGAGTCAAAAAAGAATATAAAGTTTTTACTTATAGTAGAACATATCCTGGTCCGTGTACTCATCTGACGTGGGATAATTTCGATGGTGTTGAACCTCTAGCGTTCGATAACCACCATTGTATATCGAATTGTTGTTCCTTTGTTGTGTCCAATAC</canonical>
            <polymorphic>GGTTTTTTGGTCGGGGCCGTGCTAAGCTTGATAATCGAGGCGGCTAACTGGCCGTGAAAAAATGCAAATAGCTGGTAGGCACACCTGGGCTCGAAGAATTACTTGTTGGTGTTGACTTTCACGTCATTTCATAATGGTTTTTTTGCTTAATAGGGTAGAGAATCTGTTTGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACYAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCTCAGAACAGAACGGAAGAAAATTGTGGCAAAAGTAGGGACCCGTAAAAGAAATGAGAGTCAAAAAAGAATATAAAGTTTTTACTTATAGTAGAACATATCCTGGTCCGTGTACTCATCTGACGTGGGATAATTTCGATGGTGTTGAACCTCTAGCGTTCGATAACCACCATTGTATATCGAATTGTTGTTCCTTTGTTGTGTCCAATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCATGAGATTGTAGTGTAATGT</pcr_primer_p1>
		<pcr_primer_p2>GTCATGGATTGAGCTTAACTG</pcr_primer_p2>
		<pcr_amplicon_size>459</pcr_amplicon_size>
		<canonical_amplicon>TGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGAC</canonical_amplicon>
		<polymorphic_amplicon>TGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACYAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7939</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>63917</contig_pos>
        <strand></strand>
        <context>attaaataaa[A/T]aaaatCAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAA</left_flank>
        <right_flank>AAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGTTGGTGTTGACTTTCACGTCATTTCATAATGGTTTTTTTGCTTAATAGGGTAGAGAATCTGTTTGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCTCAGAACAGAACGGAAGAAAATTGTGGCAAAAGTAGGGACCCGTAAAAGAAATGAGAGTCAAAAAAGAATATAAAGTTTTTACTTATAGTAGAACATATCCTGGTCCGTGTACTCATCTGACGTGGGATAATTTCGATGGTGTTGAACCTCTAGCGTTCGATAACCACCATTGTATATCGAATTGTTGTTCCTTTGTTGTGTCCAATACGGGTGTACTGTATTGTTGTCATAGACGTTTGACATTTCGTCAAATCCTAAAATGATAATTATTATGGATTTTTTTCTCTGAAAATGTAAAACGTACGTCTC</canonical>
            <polymorphic>CTTGTTGGTGTTGACTTTCACGTCATTTCATAATGGTTTTTTTGCTTAATAGGGTAGAGAATCTGTTTGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAWAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCTCAGAACAGAACGGAAGAAAATTGTGGCAAAAGTAGGGACCCGTAAAAGAAATGAGAGTCAAAAAAGAATATAAAGTTTTTACTTATAGTAGAACATATCCTGGTCCGTGTACTCATCTGACGTGGGATAATTTCGATGGTGTTGAACCTCTAGCGTTCGATAACCACCATTGTATATCGAATTGTTGTTCCTTTGTTGTGTCCAATACGGGTGTACTGTATTGTTGTCATAGACGTTTGACATTTCGTCAAATCCTAAAATGATAATTATTATGGATTTTTTTCTCTGAAAATGTAAAACGTACGTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCATTTTTCTTGTAGGATATG</pcr_primer_p1>
		<pcr_primer_p2>AGAGCTCTATTTATGTACCCTACG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCT</canonical_amplicon>
		<polymorphic_amplicon>GCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAWAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7945</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>63968</contig_pos>
        <strand>+</strand>
        <context>ATGTTGTGTG[A/G]TAACCGGTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTG</left_flank>
        <right_flank>TAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGTAGAGAATCTGTTTGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCTCAGAACAGAACGGAAGAAAATTGTGGCAAAAGTAGGGACCCGTAAAAGAAATGAGAGTCAAAAAAGAATATAAAGTTTTTACTTATAGTAGAACATATCCTGGTCCGTGTACTCATCTGACGTGGGATAATTTCGATGGTGTTGAACCTCTAGCGTTCGATAACCACCATTGTATATCGAATTGTTGTTCCTTTGTTGTGTCCAATACGGGTGTACTGTATTGTTGTCATAGACGTTTGACATTTCGTCAAATCCTAAAATGATAATTATTATGGATTTTTTTCTCTGAAAATGTAAAACGTACGTCTCTCTGCTCGTATCAAATTGTTCCGATCCATTGTCGCCGCGTGGTACTTCATT</canonical>
            <polymorphic>GGGTAGAGAATCTGTTTGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGRTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCTCAGAACAGAACGGAAGAAAATTGTGGCAAAAGTAGGGACCCGTAAAAGAAATGAGAGTCAAAAAAGAATATAAAGTTTTTACTTATAGTAGAACATATCCTGGTCCGTGTACTCATCTGACGTGGGATAATTTCGATGGTGTTGAACCTCTAGCGTTCGATAACCACCATTGTATATCGAATTGTTGTTCCTTTGTTGTGTCCAATACGGGTGTACTGTATTGTTGTCATAGACGTTTGACATTTCGTCAAATCCTAAAATGATAATTATTATGGATTTTTTTCTCTGAAAATGTAAAACGTACGTCTCTCTGCTCGTATCAAATTGTTCCGATCCATTGTCGCCGCGTGGTACTTCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGTNACC</site>
                <isoschizomers>
                    <enzyme>BstEII</enzyme>
                    <enzyme>BstPI</enzyme>
                    <enzyme>Eco91I</enzyme>
                    <enzyme>EcoO65I</enzyme>
                    <enzyme>PspEI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 210 162 127</canonical_bands>
                <polymorphic_bands>628 210 162</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCATTTTTCTTGTAGGATATG</pcr_primer_p1>
		<pcr_primer_p2>AGAGCTCTATTTATGTACCCTACG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCT</canonical_amplicon>
		<polymorphic_amplicon>GCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGRTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7946</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>63993</contig_pos>
        <strand>+</strand>
        <context>ATGCAGTAAA[G/T]TTAAATTAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAA</left_flank>
        <right_flank>TTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCTCAGAACAGAACGGAAGAAAATTGTGGCAAAAGTAGGGACCCGTAAAAGAAATGAGAGTCAAAAAAGAATATAAAGTTTTTACTTATAGTAGAACATATCCTGGTCCGTGTACTCATCTGACGTGGGATAATTTCGATGGTGTTGAACCTCTAGCGTTCGATAACCACCATTGTATATCGAATTGTTGTTCCTTTGTTGTGTCCAATACGGGTGTACTGTATTGTTGTCATAGACGTTTGACATTTCGTCAAATCCTAAAATGATAATTATTATGGATTTTTTTCTCTGAAAATGTAAAACGTACGTCTCTCTGCTCGTATCAAATTGTTCCGATCCATTGTCGCCGCGTGGTACTTCATTGGGTTCGGTTGTTTGAACATTGAAT</canonical>
            <polymorphic>TTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAKTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCTCAGAACAGAACGGAAGAAAATTGTGGCAAAAGTAGGGACCCGTAAAAGAAATGAGAGTCAAAAAAGAATATAAAGTTTTTACTTATAGTAGAACATATCCTGGTCCGTGTACTCATCTGACGTGGGATAATTTCGATGGTGTTGAACCTCTAGCGTTCGATAACCACCATTGTATATCGAATTGTTGTTCCTTTGTTGTGTCCAATACGGGTGTACTGTATTGTTGTCATAGACGTTTGACATTTCGTCAAATCCTAAAATGATAATTATTATGGATTTTTTTCTCTGAAAATGTAAAACGTACGTCTCTCTGCTCGTATCAAATTGTTCCGATCCATTGTCGCCGCGTGGTACTTCATTGGGTTCGGTTGTTTGAACATTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCATTTTTCTTGTAGGATATG</pcr_primer_p1>
		<pcr_primer_p2>AGAGCTCTATTTATGTACCCTACG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCT</canonical_amplicon>
		<polymorphic_amplicon>GCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAKTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7947</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>68056</contig_pos>
        <strand>+</strand>
        <context>AATCGGTGTT[A/G]ATACTAATCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTATTCTGAGAATAAGACGAAGTTGAAAAGATTGAGATGAATCGGTGTT</left_flank>
        <right_flank>ATACTAATCGGATGAAAATTACAAATCTGGTCTTCTCAATGTTTTTCTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTAAAACCCACTACACGTAGTAGTGAATAGAAATTCAGAATATCCCCCCCCCCCCCCGCTGCTAAATATATATCTATGTTTATCTCTCACTTATTTGTTTGGATTGTATTTTAGTAAGTGGAATGAGAGAGAGGGGATATATAGAATGGTGTTGAGCTCTCACTTGTGCAATGGACACGTGAATGGTAAACATTAGGCGACACGATGCAGCTGGCTCGCGCATTCGGGGAGAAACGATGCTTACAAAGTAATGAAAAGGCAGCTAATTGCGAGCGGGCTCCGAGGTAATTTGAGATGTTCTCAACTTCTTCTTCGGAAGGTCCTTCTTTCTCCTAACACCACTTCTTTCAAGATTTGAAAATTGAGACTGCAATTAGTAGAAAGAGAGGGGCCCCGGAACGGAATGCTAATGAAGATTCTCCCTCTTCCGGAAACGCGTCGAGATCTTCTATTCTGAGAATAAGACGAAGTTGAAAAGATTGAGATGAATCGGTGTTAATACTAATCGGATGAAAATTACAAATCTGGTCTTCTCAATGTTTTTCTTTACAGATTCTAAATTTGCAAAAAATCCCAAAAATGCTCTGTCTGCGCACTTTCAGCTCAAATATCTCGGTTTCTATGGGAGATACCAAAAATATGTCAACTGATAAAATATTGGTGATTTTATGAAAAACAATTTATCAGTTGAACATTTTTCGATATCTTTCGAAAGAGCTGAGATAAGTAAGCTCAACGTTTGCGTATAAGGTGAGTTGTTACGAGAGCTTCACGGTTATTACGCTCTGATAAAATTCCACCCAATTTGAGCTCAATTATCTCGGTTTCGAAAAAATATAGCAATAATTTGTAAACTTTTAAAATATTGGTAATATTTTAATTAATAATTTATCAGTTGAAACTTTTCTGATATCTTCTACTGAAACCAGAATAATTTAGCTGAAAATGCTCCCGCTCAAAGCTCTAAGAAGGGAGCTCAAAGTGCACTTTGAGCTCAA</canonical>
            <polymorphic>CTCTAAAACCCACTACACGTAGTAGTGAATAGAAATTCAGAATATCCCCCCCCCCCCCCGCTGCTAAATATATATCTATGTTTATCTCTCACTTATTTGTTTGGATTGTATTTTAGTAAGTGGAATGAGAGAGAGGGGATATATAGAATGGTGTTGAGCTCTCACTTGTGCAATGGACACGTGAATGGTAAACATTAGGCGACACGATGCAGCTGGCTCGCGCATTCGGGGAGAAACGATGCTTACAAAGTAATGAAAAGGCAGCTAATTGCGAGCGGGCTCCGAGGTAATTTGAGATGTTCTCAACTTCTTCTTCGGAAGGTCCTTCTTTCTCCTAACACCACTTCTTTCAAGATTTGAAAATTGAGACTGCAATTAGTAGAAAGAGAGGGGCCCCGGAACGGAATGCTAATGAAGATTCTCCCTCTTCCGGAAACGCGTCGAGATCTTCTATTCTGAGAATAAGACGAAGTTGAAAAGATTGAGATGAATCGGTGTTRATACTAATCGGATGAAAATTACAAATCTGGTCTTCTCAATGTTTTTCTTTACAGATTCTAAATTTGCAAAAAATCCCAAAAATGCTCTGTCTGCGCACTTTCAGCTCAAATATCTCGGTTTCTATGGGAGATACCAAAAATATGTCAACTGATAAAATATTGGTGATTTTATGAAAAACAATTTATCAGTTGAACATTTTTCGATATCTTTCGAAAGAGCTGAGATAAGTAAGCTCAACGTTTGCGTATAAGGTGAGTTGTTACGAGAGCTTCACGGTTATTACGCTCTGATAAAATTCCACCCAATTTGAGCTCAATTATCTCGGTTTCGAAAAAATATAGCAATAATTTGTAAACTTTTAAAATATTGGTAATATTTTAATTAATAATTTATCAGTTGAAACTTTTCTGATATCTTCTACTGAAACCAGAATAATTTAGCTGAAAATGCTCCCGCTCAAAGCTCTAAGAAGGGAGCTCAAAGTGCACTTTGAGCTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>498 362 117 19 4</canonical_bands>
                <polymorphic_bands>860 117 19 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCTTTCTCCTAACACCACTT</pcr_primer_p1>
		<pcr_primer_p2>GCAAATTTAGAATCTGTAAAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTTCTTTCTCCTAACACCACTTCTTTCAAGATTTGAAAATTGAGACTGCAATTAGTAGAAAGAGAGGGGCCCCGGAACGGAATGCTAATGAAGATTCTCCCTCTTCCGGAAACGCGTCGAGATCTTCTATTCTGAGAATAAGACGAAGTTGAAAAGATTGAGATGAATCGGTGTTAATACTAATCGGATGAAAATTACAAATCTGGTCTTCTCAATGTTTTTCTTTACAGATTCTAAATTTGC</canonical_amplicon>
		<polymorphic_amplicon>CTTCTTTCTCCTAACACCACTTCTTTCAAGATTTGAAAATTGAGACTGCAATTAGTAGAAAGAGAGGGGCCCCGGAACGGAATGCTAATGAAGATTCTCCCTCTTCCGGAAACGCGTCGAGATCTTCTATTCTGAGAATAAGACGAAGTTGAAAAGATTGAGATGAATCGGTGTTRATACTAATCGGATGAAAATTACAAATCTGGTCTTCTCAATGTTTTTCTTTACAGATTCTAAATTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7948</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>67849</contig_pos>
        <strand>+</strand>
        <context>CGAGGTAATT[C/T]GAGATGTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTACAAAGTAATGAAAAGGCAGCTAATTGCGAGCGGGCTCCGAGGTAATT</left_flank>
        <right_flank>GAGATGTTCTCAACTTCTTCTTCGGAAGGTCCTTCTTTCTCCTAACACCA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCTAAAAACGGGAGAAAGAAACTGGACAGGTGACGTTTCTCATGATTGACATCTTTTCTACCGTATTCCGACGTCTTCCCCTTCAATTTCCATACTCATGTATATAGTTTCGAAGTGAAATGAAATTTTTGAAACAGAATTCAAAGTCTACAAATGCTATGCTTGAGGGCATTTGAATTCAAAAAGTATATATGCATGGATGCGTCTCTAAAACCCACTACACGTAGTAGTGAATAGAAATTCAGAATATCCCCCCCCCCCCCCGCTGCTAAATATATATCTATGTTTATCTCTCACTTATTTGTTTGGATTGTATTTTAGTAAGTGGAATGAGAGAGAGGGGATATATAGAATGGTGTTGAGCTCTCACTTGTGCAATGGACACGTGAATGGTAAACATTAGGCGACACGATGCAGCTGGCTCGCGCATTCGGGGAGAAACGATGCTTACAAAGTAATGAAAAGGCAGCTAATTGCGAGCGGGCTCCGAGGTAATTTGAGATGTTCTCAACTTCTTCTTCGGAAGGTCCTTCTTTCTCCTAACACCACTTCTTTCAAGATTTGAAAATTGAGACTGCAATTAGTAGAAAGAGAGGGGCCCCGGAACGGAATGCTAATGAAGATTCTCCCTCTTCCGGAAACGCGTCGAGATCTTCTATTCTGAGAATAAGACGAAGTTGAAAAGATTGAGATGAATCGGTGTTAATACTAATCGGATGAAAATTACAAATCTGGTCTTCTCAATGTTTTTCTTTACAGATTCTAAATTTGCAAAAAATCCCAAAAATGCTCTGTCTGCGCACTTTCAGCTCAAATATCTCGGTTTCTATGGGAGATACCAAAAATATGTCAACTGATAAAATATTGGTGATTTTATGAAAAACAATTTATCAGTTGAACATTTTTCGATATCTTTCGAAAGAGCTGAGATAAGTAAGCTCAACGTTTGCGTATAAGGTGAGTTGTTACGAGAGCTTCACGGTTATTACGCTCTGATA</canonical>
            <polymorphic>TATCTAAAAACGGGAGAAAGAAACTGGACAGGTGACGTTTCTCATGATTGACATCTTTTCTACCGTATTCCGACGTCTTCCCCTTCAATTTCCATACTCATGTATATAGTTTCGAAGTGAAATGAAATTTTTGAAACAGAATTCAAAGTCTACAAATGCTATGCTTGAGGGCATTTGAATTCAAAAAGTATATATGCATGGATGCGTCTCTAAAACCCACTACACGTAGTAGTGAATAGAAATTCAGAATATCCCCCCCCCCCCCCGCTGCTAAATATATATCTATGTTTATCTCTCACTTATTTGTTTGGATTGTATTTTAGTAAGTGGAATGAGAGAGAGGGGATATATAGAATGGTGTTGAGCTCTCACTTGTGCAATGGACACGTGAATGGTAAACATTAGGCGACACGATGCAGCTGGCTCGCGCATTCGGGGAGAAACGATGCTTACAAAGTAATGAAAAGGCAGCTAATTGCGAGCGGGCTCCGAGGTAATTYGAGATGTTCTCAACTTCTTCTTCGGAAGGTCCTTCTTTCTCCTAACACCACTTCTTTCAAGATTTGAAAATTGAGACTGCAATTAGTAGAAAGAGAGGGGCCCCGGAACGGAATGCTAATGAAGATTCTCCCTCTTCCGGAAACGCGTCGAGATCTTCTATTCTGAGAATAAGACGAAGTTGAAAAGATTGAGATGAATCGGTGTTAATACTAATCGGATGAAAATTACAAATCTGGTCTTCTCAATGTTTTTCTTTACAGATTCTAAATTTGCAAAAAATCCCAAAAATGCTCTGTCTGCGCACTTTCAGCTCAAATATCTCGGTTTCTATGGGAGATACCAAAAATATGTCAACTGATAAAATATTGGTGATTTTATGAAAAACAATTTATCAGTTGAACATTTTTCGATATCTTTCGAAAGAGCTGAGATAAGTAAGCTCAACGTTTGCGTATAAGGTGAGTTGTTACGAGAGCTTCACGGTTATTACGCTCTGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGATGCTTACAAAGTAATGAAA</pcr_primer_p1>
		<pcr_primer_p2>TCAATCTTTTCAACTTCGTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGATGCTTACAAAGTAATGAAAAGGCAGCTAATTGCGAGCGGGCTCCGAGGTAATTTGAGATGTTCTCAACTTCTTCTTCGGAAGGTCCTTCTTTCTCCTAACACCACTTCTTTCAAGATTTGAAAATTGAGACTGCAATTAGTAGAAAGAGAGGGGCCCCGGAACGGAATGCTAATGAAGATTCTCCCTCTTCCGGAAACGCGTCGAGATCTTCTATTCTGAGAATAAGACGAAGTTGAAAAGATTGA</canonical_amplicon>
		<polymorphic_amplicon>ACGATGCTTACAAAGTAATGAAAAGGCAGCTAATTGCGAGCGGGCTCCGAGGTAATTYGAGATGTTCTCAACTTCTTCTTCGGAAGGTCCTTCTTTCTCCTAACACCACTTCTTTCAAGATTTGAAAATTGAGACTGCAATTAGTAGAAAGAGAGGGGCCCCGGAACGGAATGCTAATGAAGATTCTCCCTCTTCCGGAAACGCGTCGAGATCTTCTATTCTGAGAATAAGACGAAGTTGAAAAGATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7949</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>81595</contig_pos>
        <strand></strand>
        <context>ATCACAAATA[G/A]TTGTATTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTGTTTTCGTTGAGCATTGTCATCTTCTGAGTCGTCCGAAATCACAAATA</left_flank>
        <right_flank>TTGTATTTTTGGGATAGGTTCGTCATCACTATCACTTTCAGAGCTGCTGG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAATTAATAATAATTCAAAAATTCTTACCATGCTCATCTTCTGAATCTGATTCTTGCCAATTTATTCGGCGACGGTTTTTGTTGCGGCGCAGTTTTTGTTGAGGATTTTCATCTTCTGAGTCGTCCGAAATCACAAATAATGGTATTTTTGGGATAGGTACGTCATCACTATCACTTTCAGAGCTGGAGTCATCGTCAGAATCTTGCTCATCATCGTCAGAGTCGTCCGAAATCGCAAATTTCGGTATGTTTGGAAGTGGGGCTGAACAGGTAACTTTTTTCGGAAAAGCTGATAACAAGATTTTTCAGGACTATGCTTATAAAAACTTGAGATCTGCAGTGGGACAAATTTGCCACAATTAATAAAAATTCAACGAAAAATCTCACCGTGGTCATCTTCTGAATCTGATTCACCCCAAGCCATTCTGAGGCGGTTTTTGTTGAGTGATTGTTTTCGTTGAGCATTGTCATCTTCTGAGTCGTCCGAAATCACAAATAGTTGTATTTTTGGGATAGGTTCGTCATCACTATCACTTTCAGAGCTGCTGGAATCCATATCTACTCGATTCTGAATCTTTTGACTCTGATTCAAAGGAGGAGCTAAAAAATATTTGTTTTTCGAATTTGAAAGTTTTAGGAAACAACTTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAGTCATCAGATAACACAAATTTCTGTATTTTTGGAACGGGTTCGTCATCAATATCACTTTTTGAGTTGTCGGATACCGAATCTACTTGTTCTTGAATCTTCTGACGCTGATCTGATGGAGGATTGAAGAAGAATAATTGAAGAAGAAGAAAAACAGACAGTGTCTTAATGTCTGCATCTTCAAATAGTCGTATTTTGGTTCCTAGAACAGCTACAAAAAAACCTTTATTGTTAATGCTTCAAATTCAAAAAATGGCCGGTTCGGAATTTGCGCAGACATTCAGACGCTCTAACTGTCTGCGTTTCCATCTATTCAGAT</canonical>
            <polymorphic>ACAATTAATAATAATTCAAAAATTCTTACCATGCTCATCTTCTGAATCTGATTCTTGCCAATTTATTCGGCGACGGTTTTTGTTGCGGCGCAGTTTTTGTTGAGGATTTTCATCTTCTGAGTCGTCCGAAATCACAAATAATGGTATTTTTGGGATAGGTACGTCATCACTATCACTTTCAGAGCTGGAGTCATCGTCAGAATCTTGCTCATCATCGTCAGAGTCGTCCGAAATCGCAAATTTCGGTATGTTTGGAAGTGGGGCTGAACAGGTAACTTTTTTCGGAAAAGCTGATAACAAGATTTTTCAGGACTATGCTTATAAAAACTTGAGATCTGCAGTGGGACAAATTTGCCACAATTAATAAAAATTCAACGAAAAATCTCACCGTGGTCATCTTCTGAATCTGATTCACCCCAAGCCATTCTGAGGCGGTTTTTGTTGAGTGATTGTTTTCGTTGAGCATTGTCATCTTCTGAGTCGTCCGAAATCACAAATARTTGTATTTTTGGGATAGGTTCGTCATCACTATCACTTTCAGAGCTGCTGGAATCCATATCTACTCGATTCTGAATCTTTTGACTCTGATTCAAAGGAGGAGCTAAAAAATATTTGTTTTTCGAATTTGAAAGTTTTAGGAAACAACTTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAGTCATCAGATAACACAAATTTCTGTATTTTTGGAACGGGTTCGTCATCAATATCACTTTTTGAGTTGTCGGATACCGAATCTACTTGTTCTTGAATCTTCTGACGCTGATCTGATGGAGGATTGAAGAAGAATAATTGAAGAAGAAGAAAAACAGACAGTGTCTTAATGTCTGCATCTTCAAATAGTCGTATTTTGGTTCCTAGAACAGCTACAAAAAAACCTTTATTGTTAATGCTTCAAATTCAAAAAATGGCCGGTTCGGAATTTGCGCAGACATTCAGACGCTCTAACTGTCTGCGTTTCCATCTATTCAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTTGTTGAGTGATTGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CTCAGAAGATGATGAGCAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTTTGTTGAGTGATTGTTTTCGTTGAGCATTGTCATCTTCTGAGTCGTCCGAAATCACAAATAGTTGTATTTTTGGGATAGGTTCGTCATCACTATCACTTTCAGAGCTGCTGGAATCCATATCTACTCGATTCTGAATCTTTTGACTCTGATTCAAAGGAGGAGCTAAAAAATATTTGTTTTTCGAATTTGAAAGTTTTAGGAAACAACTTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAG</canonical_amplicon>
		<polymorphic_amplicon>GTTTTTGTTGAGTGATTGTTTTCGTTGAGCATTGTCATCTTCTGAGTCGTCCGAAATCACAAATARTTGTATTTTTGGGATAGGTTCGTCATCACTATCACTTTCAGAGCTGCTGGAATCCATATCTACTCGATTCTGAATCTTTTGACTCTGATTCAAAGGAGGAGCTAAAAAATATTTGTTTTTCGAATTTGAAAGTTTTAGGAAACAACTTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7950</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>81661</contig_pos>
        <strand></strand>
        <context>ATATCTACTC[G/A]ATTCTGAATC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGGTTCGTCATCACTATCACTTTCAGAGCTGCTGGAATCCATATCTACTC</left_flank>
        <right_flank>ATTCTGAATCTTTTGACTCTGATTCAAAGGAGGAGCTAAAAAATATTTGT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGGCGACGGTTTTTGTTGCGGCGCAGTTTTTGTTGAGGATTTTCATCTTCTGAGTCGTCCGAAATCACAAATAATGGTATTTTTGGGATAGGTACGTCATCACTATCACTTTCAGAGCTGGAGTCATCGTCAGAATCTTGCTCATCATCGTCAGAGTCGTCCGAAATCGCAAATTTCGGTATGTTTGGAAGTGGGGCTGAACAGGTAACTTTTTTCGGAAAAGCTGATAACAAGATTTTTCAGGACTATGCTTATAAAAACTTGAGATCTGCAGTGGGACAAATTTGCCACAATTAATAAAAATTCAACGAAAAATCTCACCGTGGTCATCTTCTGAATCTGATTCACCCCAAGCCATTCTGAGGCGGTTTTTGTTGAGTGATTGTTTTCGTTGAGCATTGTCATCTTCTGAGTCGTCCGAAATCACAAATAGTTGTATTTTTGGGATAGGTTCGTCATCACTATCACTTTCAGAGCTGCTGGAATCCATATCTACTCGATTCTGAATCTTTTGACTCTGATTCAAAGGAGGAGCTAAAAAATATTTGTTTTTCGAATTTGAAAGTTTTAGGAAACAACTTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAGTCATCAGATAACACAAATTTCTGTATTTTTGGAACGGGTTCGTCATCAATATCACTTTTTGAGTTGTCGGATACCGAATCTACTTGTTCTTGAATCTTCTGACGCTGATCTGATGGAGGATTGAAGAAGAATAATTGAAGAAGAAGAAAAACAGACAGTGTCTTAATGTCTGCATCTTCAAATAGTCGTATTTTGGTTCCTAGAACAGCTACAAAAAAACCTTTATTGTTAATGCTTCAAATTCAAAAAATGGCCGGTTCGGAATTTGCGCAGACATTCAGACGCTCTAACTGTCTGCGTTTCCATCTATTCAGATACTTTCAAATATTAAAATTTCCAAAAAGCATTTTTAAAAAAATTTTTAGAAACTTTCAAGAAAAAT</canonical>
            <polymorphic>TCGGCGACGGTTTTTGTTGCGGCGCAGTTTTTGTTGAGGATTTTCATCTTCTGAGTCGTCCGAAATCACAAATAATGGTATTTTTGGGATAGGTACGTCATCACTATCACTTTCAGAGCTGGAGTCATCGTCAGAATCTTGCTCATCATCGTCAGAGTCGTCCGAAATCGCAAATTTCGGTATGTTTGGAAGTGGGGCTGAACAGGTAACTTTTTTCGGAAAAGCTGATAACAAGATTTTTCAGGACTATGCTTATAAAAACTTGAGATCTGCAGTGGGACAAATTTGCCACAATTAATAAAAATTCAACGAAAAATCTCACCGTGGTCATCTTCTGAATCTGATTCACCCCAAGCCATTCTGAGGCGGTTTTTGTTGAGTGATTGTTTTCGTTGAGCATTGTCATCTTCTGAGTCGTCCGAAATCACAAATAGTTGTATTTTTGGGATAGGTTCGTCATCACTATCACTTTCAGAGCTGCTGGAATCCATATCTACTCRATTCTGAATCTTTTGACTCTGATTCAAAGGAGGAGCTAAAAAATATTTGTTTTTCGAATTTGAAAGTTTTAGGAAACAACTTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAGTCATCAGATAACACAAATTTCTGTATTTTTGGAACGGGTTCGTCATCAATATCACTTTTTGAGTTGTCGGATACCGAATCTACTTGTTCTTGAATCTTCTGACGCTGATCTGATGGAGGATTGAAGAAGAATAATTGAAGAAGAAGAAAAACAGACAGTGTCTTAATGTCTGCATCTTCAAATAGTCGTATTTTGGTTCCTAGAACAGCTACAAAAAAACCTTTATTGTTAATGCTTCAAATTCAAAAAATGGCCGGTTCGGAATTTGCGCAGACATTCAGACGCTCTAACTGTCTGCGTTTCCATCTATTCAGATACTTTCAAATATTAAAATTTCCAAAAAGCATTTTTAAAAAAATTTTTAGAAACTTTCAAGAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 445 56</canonical_bands>
                <polymorphic_bands>555 445</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>290 182 78 74 72 69 69 53 21 21 16 16 12 9 6 6 6</canonical_bands>
                <polymorphic_bands>290 182 78 74 72 69 69 53 22 21 21 16 12 9 6 6</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>290 203 141 134 99 74 16 16 15 6 6</canonical_bands>
                <polymorphic_bands>290 203 141 134 99 74 22 16 15 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTTGTTGAGTGATTGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CTCAGAAGATGATGAGCAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTTTGTTGAGTGATTGTTTTCGTTGAGCATTGTCATCTTCTGAGTCGTCCGAAATCACAAATAGTTGTATTTTTGGGATAGGTTCGTCATCACTATCACTTTCAGAGCTGCTGGAATCCATATCTACTCGATTCTGAATCTTTTGACTCTGATTCAAAGGAGGAGCTAAAAAATATTTGTTTTTCGAATTTGAAAGTTTTAGGAAACAACTTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAG</canonical_amplicon>
		<polymorphic_amplicon>GTTTTTGTTGAGTGATTGTTTTCGTTGAGCATTGTCATCTTCTGAGTCGTCCGAAATCACAAATAGTTGTATTTTTGGGATAGGTTCGTCATCACTATCACTTTCAGAGCTGCTGGAATCCATATCTACTCRATTCTGAATCTTTTGACTCTGATTCAAAGGAGGAGCTAAAAAATATTTGTTTTTCGAATTTGAAAGTTTTAGGAAACAACTTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7951</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>81699</contig_pos>
        <strand></strand>
        <context>AGGAGGAGCT[A/G]AAAAATATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCATATCTACTCGATTCTGAATCTTTTGACTCTGATTCAAAGGAGGAGCT</left_flank>
        <right_flank>AAAAATATTTGTTTTTCGAATTTGAAAGTTTTAGGAAACAACTTTTGTCA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTTCATCTTCTGAGTCGTCCGAAATCACAAATAATGGTATTTTTGGGATAGGTACGTCATCACTATCACTTTCAGAGCTGGAGTCATCGTCAGAATCTTGCTCATCATCGTCAGAGTCGTCCGAAATCGCAAATTTCGGTATGTTTGGAAGTGGGGCTGAACAGGTAACTTTTTTCGGAAAAGCTGATAACAAGATTTTTCAGGACTATGCTTATAAAAACTTGAGATCTGCAGTGGGACAAATTTGCCACAATTAATAAAAATTCAACGAAAAATCTCACCGTGGTCATCTTCTGAATCTGATTCACCCCAAGCCATTCTGAGGCGGTTTTTGTTGAGTGATTGTTTTCGTTGAGCATTGTCATCTTCTGAGTCGTCCGAAATCACAAATAGTTGTATTTTTGGGATAGGTTCGTCATCACTATCACTTTCAGAGCTGCTGGAATCCATATCTACTCGATTCTGAATCTTTTGACTCTGATTCAAAGGAGGAGCTAAAAAATATTTGTTTTTCGAATTTGAAAGTTTTAGGAAACAACTTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAGTCATCAGATAACACAAATTTCTGTATTTTTGGAACGGGTTCGTCATCAATATCACTTTTTGAGTTGTCGGATACCGAATCTACTTGTTCTTGAATCTTCTGACGCTGATCTGATGGAGGATTGAAGAAGAATAATTGAAGAAGAAGAAAAACAGACAGTGTCTTAATGTCTGCATCTTCAAATAGTCGTATTTTGGTTCCTAGAACAGCTACAAAAAAACCTTTATTGTTAATGCTTCAAATTCAAAAAATGGCCGGTTCGGAATTTGCGCAGACATTCAGACGCTCTAACTGTCTGCGTTTCCATCTATTCAGATACTTTCAAATATTAAAATTTCCAAAAAGCATTTTTAAAAAAATTTTTAGAAACTTTCAAGAAAAATTATAAAACGAAAACTCGAAATGAATTATAGAAAAAAGA</canonical>
            <polymorphic>GATTTTCATCTTCTGAGTCGTCCGAAATCACAAATAATGGTATTTTTGGGATAGGTACGTCATCACTATCACTTTCAGAGCTGGAGTCATCGTCAGAATCTTGCTCATCATCGTCAGAGTCGTCCGAAATCGCAAATTTCGGTATGTTTGGAAGTGGGGCTGAACAGGTAACTTTTTTCGGAAAAGCTGATAACAAGATTTTTCAGGACTATGCTTATAAAAACTTGAGATCTGCAGTGGGACAAATTTGCCACAATTAATAAAAATTCAACGAAAAATCTCACCGTGGTCATCTTCTGAATCTGATTCACCCCAAGCCATTCTGAGGCGGTTTTTGTTGAGTGATTGTTTTCGTTGAGCATTGTCATCTTCTGAGTCGTCCGAAATCACAAATAGTTGTATTTTTGGGATAGGTTCGTCATCACTATCACTTTCAGAGCTGCTGGAATCCATATCTACTCGATTCTGAATCTTTTGACTCTGATTCAAAGGAGGAGCTRAAAAATATTTGTTTTTCGAATTTGAAAGTTTTAGGAAACAACTTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAGTCATCAGATAACACAAATTTCTGTATTTTTGGAACGGGTTCGTCATCAATATCACTTTTTGAGTTGTCGGATACCGAATCTACTTGTTCTTGAATCTTCTGACGCTGATCTGATGGAGGATTGAAGAAGAATAATTGAAGAAGAAGAAAAACAGACAGTGTCTTAATGTCTGCATCTTCAAATAGTCGTATTTTGGTTCCTAGAACAGCTACAAAAAAACCTTTATTGTTAATGCTTCAAATTCAAAAAATGGCCGGTTCGGAATTTGCGCAGACATTCAGACGCTCTAACTGTCTGCGTTTCCATCTATTCAGATACTTTCAAATATTAAAATTTCCAAAAAGCATTTTTAAAAAAATTTTTAGAAACTTTCAAGAAAAATTATAAAACGAAAACTCGAAATGAATTATAGAAAAAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTTGTTGAGTGATTGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CTCAGAAGATGATGAGCAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTTTGTTGAGTGATTGTTTTCGTTGAGCATTGTCATCTTCTGAGTCGTCCGAAATCACAAATAGTTGTATTTTTGGGATAGGTTCGTCATCACTATCACTTTCAGAGCTGCTGGAATCCATATCTACTCGATTCTGAATCTTTTGACTCTGATTCAAAGGAGGAGCTAAAAAATATTTGTTTTTCGAATTTGAAAGTTTTAGGAAACAACTTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAG</canonical_amplicon>
		<polymorphic_amplicon>GTTTTTGTTGAGTGATTGTTTTCGTTGAGCATTGTCATCTTCTGAGTCGTCCGAAATCACAAATAGTTGTATTTTTGGGATAGGTTCGTCATCACTATCACTTTCAGAGCTGCTGGAATCCATATCTACTCGATTCTGAATCTTTTGACTCTGATTCAAAGGAGGAGCTRAAAAATATTTGTTTTTCGAATTTGAAAGTTTTAGGAAACAACTTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7952</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>81733</contig_pos>
        <strand></strand>
        <context>GAAAGTTTTA[G/A]GAAACAACYT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTCAAAGGAGGAGCTAAAAAATATTTGTTTTTCGAATTTGAAAGTTTTA</left_flank>
        <right_flank>GAAACAACTTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAGTCAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATGGTATTTTTGGGATAGGTACGTCATCACTATCACTTTCAGAGCTGGAGTCATCGTCAGAATCTTGCTCATCATCGTCAGAGTCGTCCGAAATCGCAAATTTCGGTATGTTTGGAAGTGGGGCTGAACAGGTAACTTTTTTCGGAAAAGCTGATAACAAGATTTTTCAGGACTATGCTTATAAAAACTTGAGATCTGCAGTGGGACAAATTTGCCACAATTAATAAAAATTCAACGAAAAATCTCACCGTGGTCATCTTCTGAATCTGATTCACCCCAAGCCATTCTGAGGCGGTTTTTGTTGAGTGATTGTTTTCGTTGAGCATTGTCATCTTCTGAGTCGTCCGAAATCACAAATAGTTGTATTTTTGGGATAGGTTCGTCATCACTATCACTTTCAGAGCTGCTGGAATCCATATCTACTCGATTCTGAATCTTTTGACTCTGATTCAAAGGAGGAGCTAAAAAATATTTGTTTTTCGAATTTGAAAGTTTTAGGAAACAACTTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAGTCATCAGATAACACAAATTTCTGTATTTTTGGAACGGGTTCGTCATCAATATCACTTTTTGAGTTGTCGGATACCGAATCTACTTGTTCTTGAATCTTCTGACGCTGATCTGATGGAGGATTGAAGAAGAATAATTGAAGAAGAAGAAAAACAGACAGTGTCTTAATGTCTGCATCTTCAAATAGTCGTATTTTGGTTCCTAGAACAGCTACAAAAAAACCTTTATTGTTAATGCTTCAAATTCAAAAAATGGCCGGTTCGGAATTTGCGCAGACATTCAGACGCTCTAACTGTCTGCGTTTCCATCTATTCAGATACTTTCAAATATTAAAATTTCCAAAAAGCATTTTTAAAAAAATTTTTAGAAACTTTCAAGAAAAATTATAAAACGAAAACTCGAAATGAATTATAGAAAAAAGACCTTATTTTTGTCTCAAAATTTCAGAAAAAAAAA</canonical>
            <polymorphic>TAATGGTATTTTTGGGATAGGTACGTCATCACTATCACTTTCAGAGCTGGAGTCATCGTCAGAATCTTGCTCATCATCGTCAGAGTCGTCCGAAATCGCAAATTTCGGTATGTTTGGAAGTGGGGCTGAACAGGTAACTTTTTTCGGAAAAGCTGATAACAAGATTTTTCAGGACTATGCTTATAAAAACTTGAGATCTGCAGTGGGACAAATTTGCCACAATTAATAAAAATTCAACGAAAAATCTCACCGTGGTCATCTTCTGAATCTGATTCACCCCAAGCCATTCTGAGGCGGTTTTTGTTGAGTGATTGTTTTCGTTGAGCATTGTCATCTTCTGAGTCGTCCGAAATCACAAATAGTTGTATTTTTGGGATAGGTTCGTCATCACTATCACTTTCAGAGCTGCTGGAATCCATATCTACTCGATTCTGAATCTTTTGACTCTGATTCAAAGGAGGAGCTAAAAAATATTTGTTTTTCGAATTTGAAAGTTTTARGAAACAACTTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAGTCATCAGATAACACAAATTTCTGTATTTTTGGAACGGGTTCGTCATCAATATCACTTTTTGAGTTGTCGGATACCGAATCTACTTGTTCTTGAATCTTCTGACGCTGATCTGATGGAGGATTGAAGAAGAATAATTGAAGAAGAAGAAAAACAGACAGTGTCTTAATGTCTGCATCTTCAAATAGTCGTATTTTGGTTCCTAGAACAGCTACAAAAAAACCTTTATTGTTAATGCTTCAAATTCAAAAAATGGCCGGTTCGGAATTTGCGCAGACATTCAGACGCTCTAACTGTCTGCGTTTCCATCTATTCAGATACTTTCAAATATTAAAATTTCCAAAAAGCATTTTTAAAAAAATTTTTAGAAACTTTCAAGAAAAATTATAAAACGAAAACTCGAAATGAATTATAGAAAAAAGACCTTATTTTTGTCTCAAAATTTCAGAAAAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCATCACTATCACTTTCAGAGC</pcr_primer_p1>
		<pcr_primer_p2>AAGAACAAGTAGATTCGGTATCC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GTCATCACTATCACTTTCAGAGCTGGAGTCATCGTCAGAATCTTGCTCATCATCGTCAGAGTCGTCCGAAATCGCAAATTTCGGTATGTTTGGAAGTGGGGCTGAACAGGTAACTTTTTTCGGAAAAGCTGATAACAAGATTTTTCAGGACTATGCTTATAAAAACTTGAGATCTGCAGTGGGACAAATTTGCCACAATTAATAAAAATTCAACGAAAAATCTCACCGTGGTCATCTTCTGAATCTGATTCACCCCAAGCCATTCTGAGGCGGTTTTTGTTGAGTGATTGTTTTCGTTGAGCATTGTCATCTTCTGAGTCGTCCGAAATCACAAATAGTTGTATTTTTGGGATAGGTTCGTCATCACTATCACTTTCAGAGCTGCTGGAATCCATATCTACTCGATTCTGAATCTTTTGACTCTGATTCAAAGGAGGAGCTAAAAAATATTTGTTTTTCGAATTTGAAAGTTTTAGGAAACAACTTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAGTCATCAGATAACACAAATTTCTGTATTTTTGGAACGGGTTCGTCATCAATATCACTTTTTGAGTTGTCGGATACCGAATCTACTTGTTCTT</canonical_amplicon>
		<polymorphic_amplicon>GTCATCACTATCACTTTCAGAGCTGGAGTCATCGTCAGAATCTTGCTCATCATCGTCAGAGTCGTCCGAAATCGCAAATTTCGGTATGTTTGGAAGTGGGGCTGAACAGGTAACTTTTTTCGGAAAAGCTGATAACAAGATTTTTCAGGACTATGCTTATAAAAACTTGAGATCTGCAGTGGGACAAATTTGCCACAATTAATAAAAATTCAACGAAAAATCTCACCGTGGTCATCTTCTGAATCTGATTCACCCCAAGCCATTCTGAGGCGGTTTTTGTTGAGTGATTGTTTTCGTTGAGCATTGTCATCTTCTGAGTCGTCCGAAATCACAAATAGTTGTATTTTTGGGATAGGTTCGTCATCACTATCACTTTCAGAGCTGCTGGAATCCATATCTACTCGATTCTGAATCTTTTGACTCTGATTCAAAGGAGGAGCTAAAAAATATTTGTTTTTCGAATTTGAAAGTTTTARGAAACAACTTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAGTCATCAGATAACACAAATTTCTGTATTTTTGGAACGGGTTCGTCATCAATATCACTTTTTGAGTTGTCGGATACCGAATCTACTTGTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7953</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>81742</contig_pos>
        <strand></strand>
        <context>ARGAAACAAC[T/C]TTTGTCATCG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGGAGCTAAAAAATATTTGTTTTTCGAATTTGAAAGTTTTAGGAAACAAC</left_flank>
        <right_flank>TTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAGTCATCAGATAACA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGGGATAGGTACGTCATCACTATCACTTTCAGAGCTGGAGTCATCGTCAGAATCTTGCTCATCATCGTCAGAGTCGTCCGAAATCGCAAATTTCGGTATGTTTGGAAGTGGGGCTGAACAGGTAACTTTTTTCGGAAAAGCTGATAACAAGATTTTTCAGGACTATGCTTATAAAAACTTGAGATCTGCAGTGGGACAAATTTGCCACAATTAATAAAAATTCAACGAAAAATCTCACCGTGGTCATCTTCTGAATCTGATTCACCCCAAGCCATTCTGAGGCGGTTTTTGTTGAGTGATTGTTTTCGTTGAGCATTGTCATCTTCTGAGTCGTCCGAAATCACAAATAGTTGTATTTTTGGGATAGGTTCGTCATCACTATCACTTTCAGAGCTGCTGGAATCCATATCTACTCGATTCTGAATCTTTTGACTCTGATTCAAAGGAGGAGCTAAAAAATATTTGTTTTTCGAATTTGAAAGTTTTAGGAAACAACTTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAGTCATCAGATAACACAAATTTCTGTATTTTTGGAACGGGTTCGTCATCAATATCACTTTTTGAGTTGTCGGATACCGAATCTACTTGTTCTTGAATCTTCTGACGCTGATCTGATGGAGGATTGAAGAAGAATAATTGAAGAAGAAGAAAAACAGACAGTGTCTTAATGTCTGCATCTTCAAATAGTCGTATTTTGGTTCCTAGAACAGCTACAAAAAAACCTTTATTGTTAATGCTTCAAATTCAAAAAATGGCCGGTTCGGAATTTGCGCAGACATTCAGACGCTCTAACTGTCTGCGTTTCCATCTATTCAGATACTTTCAAATATTAAAATTTCCAAAAAGCATTTTTAAAAAAATTTTTAGAAACTTTCAAGAAAAATTATAAAACGAAAACTCGAAATGAATTATAGAAAAAAGACCTTATTTTTGTCTCAAAATTTCAGAAAAAAAAACCCGCGTAG</canonical>
            <polymorphic>TTTTGGGATAGGTACGTCATCACTATCACTTTCAGAGCTGGAGTCATCGTCAGAATCTTGCTCATCATCGTCAGAGTCGTCCGAAATCGCAAATTTCGGTATGTTTGGAAGTGGGGCTGAACAGGTAACTTTTTTCGGAAAAGCTGATAACAAGATTTTTCAGGACTATGCTTATAAAAACTTGAGATCTGCAGTGGGACAAATTTGCCACAATTAATAAAAATTCAACGAAAAATCTCACCGTGGTCATCTTCTGAATCTGATTCACCCCAAGCCATTCTGAGGCGGTTTTTGTTGAGTGATTGTTTTCGTTGAGCATTGTCATCTTCTGAGTCGTCCGAAATCACAAATAGTTGTATTTTTGGGATAGGTTCGTCATCACTATCACTTTCAGAGCTGCTGGAATCCATATCTACTCGATTCTGAATCTTTTGACTCTGATTCAAAGGAGGAGCTAAAAAATATTTGTTTTTCGAATTTGAAAGTTTTAGGAAACAACYTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAGTCATCAGATAACACAAATTTCTGTATTTTTGGAACGGGTTCGTCATCAATATCACTTTTTGAGTTGTCGGATACCGAATCTACTTGTTCTTGAATCTTCTGACGCTGATCTGATGGAGGATTGAAGAAGAATAATTGAAGAAGAAGAAAAACAGACAGTGTCTTAATGTCTGCATCTTCAAATAGTCGTATTTTGGTTCCTAGAACAGCTACAAAAAAACCTTTATTGTTAATGCTTCAAATTCAAAAAATGGCCGGTTCGGAATTTGCGCAGACATTCAGACGCTCTAACTGTCTGCGTTTCCATCTATTCAGATACTTTCAAATATTAAAATTTCCAAAAAGCATTTTTAAAAAAATTTTTAGAAACTTTCAAGAAAAATTATAAAACGAAAACTCGAAATGAATTATAGAAAAAAGACCTTATTTTTGTCTCAAAATTTCAGAAAAAAAAACCCGCGTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCATCACTATCACTTTCAGAGC</pcr_primer_p1>
		<pcr_primer_p2>AAGAACAAGTAGATTCGGTATCC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GTCATCACTATCACTTTCAGAGCTGGAGTCATCGTCAGAATCTTGCTCATCATCGTCAGAGTCGTCCGAAATCGCAAATTTCGGTATGTTTGGAAGTGGGGCTGAACAGGTAACTTTTTTCGGAAAAGCTGATAACAAGATTTTTCAGGACTATGCTTATAAAAACTTGAGATCTGCAGTGGGACAAATTTGCCACAATTAATAAAAATTCAACGAAAAATCTCACCGTGGTCATCTTCTGAATCTGATTCACCCCAAGCCATTCTGAGGCGGTTTTTGTTGAGTGATTGTTTTCGTTGAGCATTGTCATCTTCTGAGTCGTCCGAAATCACAAATAGTTGTATTTTTGGGATAGGTTCGTCATCACTATCACTTTCAGAGCTGCTGGAATCCATATCTACTCGATTCTGAATCTTTTGACTCTGATTCAAAGGAGGAGCTAAAAAATATTTGTTTTTCGAATTTGAAAGTTTTAGGAAACAACTTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAGTCATCAGATAACACAAATTTCTGTATTTTTGGAACGGGTTCGTCATCAATATCACTTTTTGAGTTGTCGGATACCGAATCTACTTGTTCTT</canonical_amplicon>
		<polymorphic_amplicon>GTCATCACTATCACTTTCAGAGCTGGAGTCATCGTCAGAATCTTGCTCATCATCGTCAGAGTCGTCCGAAATCGCAAATTTCGGTATGTTTGGAAGTGGGGCTGAACAGGTAACTTTTTTCGGAAAAGCTGATAACAAGATTTTTCAGGACTATGCTTATAAAAACTTGAGATCTGCAGTGGGACAAATTTGCCACAATTAATAAAAATTCAACGAAAAATCTCACCGTGGTCATCTTCTGAATCTGATTCACCCCAAGCCATTCTGAGGCGGTTTTTGTTGAGTGATTGTTTTCGTTGAGCATTGTCATCTTCTGAGTCGTCCGAAATCACAAATAGTTGTATTTTTGGGATAGGTTCGTCATCACTATCACTTTCAGAGCTGCTGGAATCCATATCTACTCGATTCTGAATCTTTTGACTCTGATTCAAAGGAGGAGCTAAAAAATATTTGTTTTTCGAATTTGAAAGTTTTAGGAAACAACYTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAGTCATCAGATAACACAAATTTCTGTATTTTTGGAACGGGTTCGTCATCAATATCACTTTTTGAGTTGTCGGATACCGAATCTACTTGTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7954</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>81811</contig_pos>
        <strand></strand>
        <context>TGTATTTTTG[G/A]AACGGGTTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTGCTCATCATCTTCTGAGTCATCAGATAACACAAATTTCTGTATTTTTG</left_flank>
        <right_flank>AACGGGTTCGTCATCAATATCACTTTTTGAGTTGTCGGATACCGAATCTA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCAGAGTCGTCCGAAATCGCAAATTTCGGTATGTTTGGAAGTGGGGCTGAACAGGTAACTTTTTTCGGAAAAGCTGATAACAAGATTTTTCAGGACTATGCTTATAAAAACTTGAGATCTGCAGTGGGACAAATTTGCCACAATTAATAAAAATTCAACGAAAAATCTCACCGTGGTCATCTTCTGAATCTGATTCACCCCAAGCCATTCTGAGGCGGTTTTTGTTGAGTGATTGTTTTCGTTGAGCATTGTCATCTTCTGAGTCGTCCGAAATCACAAATAGTTGTATTTTTGGGATAGGTTCGTCATCACTATCACTTTCAGAGCTGCTGGAATCCATATCTACTCGATTCTGAATCTTTTGACTCTGATTCAAAGGAGGAGCTAAAAAATATTTGTTTTTCGAATTTGAAAGTTTTAGGAAACAACTTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAGTCATCAGATAACACAAATTTCTGTATTTTTGGAACGGGTTCGTCATCAATATCACTTTTTGAGTTGTCGGATACCGAATCTACTTGTTCTTGAATCTTCTGACGCTGATCTGATGGAGGATTGAAGAAGAATAATTGAAGAAGAAGAAAAACAGACAGTGTCTTAATGTCTGCATCTTCAAATAGTCGTATTTTGGTTCCTAGAACAGCTACAAAAAAACCTTTATTGTTAATGCTTCAAATTCAAAAAATGGCCGGTTCGGAATTTGCGCAGACATTCAGACGCTCTAACTGTCTGCGTTTCCATCTATTCAGATACTTTCAAATATTAAAATTTCCAAAAAGCATTTTTAAAAAAATTTTTAGAAACTTTCAAGAAAAATTATAAAACGAAAACTCGAAATGAATTATAGAAAAAAGACCTTATTTTTGTCTCAAAATTTCAGAAAAAAAAACCCGCGTAGCTGTTGATACTCACCTTCAGTAATCCTATTTTTCCTGATCTTCTGTCTCCGTGAGCTCACTTGCTTACT</canonical>
            <polymorphic>GTCAGAGTCGTCCGAAATCGCAAATTTCGGTATGTTTGGAAGTGGGGCTGAACAGGTAACTTTTTTCGGAAAAGCTGATAACAAGATTTTTCAGGACTATGCTTATAAAAACTTGAGATCTGCAGTGGGACAAATTTGCCACAATTAATAAAAATTCAACGAAAAATCTCACCGTGGTCATCTTCTGAATCTGATTCACCCCAAGCCATTCTGAGGCGGTTTTTGTTGAGTGATTGTTTTCGTTGAGCATTGTCATCTTCTGAGTCGTCCGAAATCACAAATAGTTGTATTTTTGGGATAGGTTCGTCATCACTATCACTTTCAGAGCTGCTGGAATCCATATCTACTCGATTCTGAATCTTTTGACTCTGATTCAAAGGAGGAGCTAAAAAATATTTGTTTTTCGAATTTGAAAGTTTTAGGAAACAACTTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAGTCATCAGATAACACAAATTTCTGTATTTTTGRAACGGGTTCGTCATCAATATCACTTTTTGAGTTGTCGGATACCGAATCTACTTGTTCTTGAATCTTCTGACGCTGATCTGATGGAGGATTGAAGAAGAATAATTGAAGAAGAAGAAAAACAGACAGTGTCTTAATGTCTGCATCTTCAAATAGTCGTATTTTGGTTCCTAGAACAGCTACAAAAAAACCTTTATTGTTAATGCTTCAAATTCAAAAAATGGCCGGTTCGGAATTTGCGCAGACATTCAGACGCTCTAACTGTCTGCGTTTCCATCTATTCAGATACTTTCAAATATTAAAATTTCCAAAAAGCATTTTTAAAAAAATTTTTAGAAACTTTCAAGAAAAATTATAAAACGAAAACTCGAAATGAATTATAGAAAAAAGACCTTATTTTTGTCTCAAAATTTCAGAAAAAAAAACCCGCGTAGCTGTTGATACTCACCTTCAGTAATCCTATTTTTCCTGATCTTCTGTCTCCGTGAGCTCACTTGCTTACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCATCACTATCACTTTCAGAGC</pcr_primer_p1>
		<pcr_primer_p2>AAGAACAAGTAGATTCGGTATCC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GTCATCACTATCACTTTCAGAGCTGCTGGAATCCATATCTACTCGATTCTGAATCTTTTGACTCTGATTCAAAGGAGGAGCTAAAAAATATTTGTTTTTCGAATTTGAAAGTTTTAGGAAACAACTTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAGTCATCAGATAACACAAATTTCTGTATTTTTGGAACGGGTTCGTCATCAATATCACTTTTTGAGTTGTCGGATACCGAATCTACTTGTTCTT</canonical_amplicon>
		<polymorphic_amplicon>GTCATCACTATCACTTTCAGAGCTGCTGGAATCCATATCTACTCGATTCTGAATCTTTTGACTCTGATTCAAAGGAGGAGCTAAAAAATATTTGTTTTTCGAATTTGAAAGTTTTAGGAAACAACTTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAGTCATCAGATAACACAAATTTCTGTATTTTTGRAACGGGTTCGTCATCAATATCACTTTTTGAGTTGTCGGATACCGAATCTACTTGTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7955</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>81828</contig_pos>
        <strand></strand>
        <context>TTCGTCATCA[A/C]TATCACTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTCATCAGATAACACAAATTTCTGTATTTTTGGAACGGGTTCGTCATCA</left_flank>
        <right_flank>TATCACTTTTTGAGTTGTCGGATACCGAATCTACTTGTTCTTGAATCTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGCAAATTTCGGTATGTTTGGAAGTGGGGCTGAACAGGTAACTTTTTTCGGAAAAGCTGATAACAAGATTTTTCAGGACTATGCTTATAAAAACTTGAGATCTGCAGTGGGACAAATTTGCCACAATTAATAAAAATTCAACGAAAAATCTCACCGTGGTCATCTTCTGAATCTGATTCACCCCAAGCCATTCTGAGGCGGTTTTTGTTGAGTGATTGTTTTCGTTGAGCATTGTCATCTTCTGAGTCGTCCGAAATCACAAATAGTTGTATTTTTGGGATAGGTTCGTCATCACTATCACTTTCAGAGCTGCTGGAATCCATATCTACTCGATTCTGAATCTTTTGACTCTGATTCAAAGGAGGAGCTAAAAAATATTTGTTTTTCGAATTTGAAAGTTTTAGGAAACAACTTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAGTCATCAGATAACACAAATTTCTGTATTTTTGGAACGGGTTCGTCATCAATATCACTTTTTGAGTTGTCGGATACCGAATCTACTTGTTCTTGAATCTTCTGACGCTGATCTGATGGAGGATTGAAGAAGAATAATTGAAGAAGAAGAAAAACAGACAGTGTCTTAATGTCTGCATCTTCAAATAGTCGTATTTTGGTTCCTAGAACAGCTACAAAAAAACCTTTATTGTTAATGCTTCAAATTCAAAAAATGGCCGGTTCGGAATTTGCGCAGACATTCAGACGCTCTAACTGTCTGCGTTTCCATCTATTCAGATACTTTCAAATATTAAAATTTCCAAAAAGCATTTTTAAAAAAATTTTTAGAAACTTTCAAGAAAAATTATAAAACGAAAACTCGAAATGAATTATAGAAAAAAGACCTTATTTTTGTCTCAAAATTTCAGAAAAAAAAACCCGCGTAGCTGTTGATACTCACCTTCAGTAATCCTATTTTTCCTGATCTTCTGTCTCCGTGAGCTCACTTGCTTACTGAGTCTCTTATTTCCCT</canonical>
            <polymorphic>TCGCAAATTTCGGTATGTTTGGAAGTGGGGCTGAACAGGTAACTTTTTTCGGAAAAGCTGATAACAAGATTTTTCAGGACTATGCTTATAAAAACTTGAGATCTGCAGTGGGACAAATTTGCCACAATTAATAAAAATTCAACGAAAAATCTCACCGTGGTCATCTTCTGAATCTGATTCACCCCAAGCCATTCTGAGGCGGTTTTTGTTGAGTGATTGTTTTCGTTGAGCATTGTCATCTTCTGAGTCGTCCGAAATCACAAATAGTTGTATTTTTGGGATAGGTTCGTCATCACTATCACTTTCAGAGCTGCTGGAATCCATATCTACTCGATTCTGAATCTTTTGACTCTGATTCAAAGGAGGAGCTAAAAAATATTTGTTTTTCGAATTTGAAAGTTTTAGGAAACAACTTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAGTCATCAGATAACACAAATTTCTGTATTTTTGGAACGGGTTCGTCATCAMTATCACTTTTTGAGTTGTCGGATACCGAATCTACTTGTTCTTGAATCTTCTGACGCTGATCTGATGGAGGATTGAAGAAGAATAATTGAAGAAGAAGAAAAACAGACAGTGTCTTAATGTCTGCATCTTCAAATAGTCGTATTTTGGTTCCTAGAACAGCTACAAAAAAACCTTTATTGTTAATGCTTCAAATTCAAAAAATGGCCGGTTCGGAATTTGCGCAGACATTCAGACGCTCTAACTGTCTGCGTTTCCATCTATTCAGATACTTTCAAATATTAAAATTTCCAAAAAGCATTTTTAAAAAAATTTTTAGAAACTTTCAAGAAAAATTATAAAACGAAAACTCGAAATGAATTATAGAAAAAAGACCTTATTTTTGTCTCAAAATTTCAGAAAAAAAAACCCGCGTAGCTGTTGATACTCACCTTCAGTAATCCTATTTTTCCTGATCTTCTGTCTCCGTGAGCTCACTTGCTTACTGAGTCTCTTATTTCCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTCATCGTCAGAATCTTG</pcr_primer_p1>
		<pcr_primer_p2>TAGCTGTTCTAGGAACCAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAGTCATCAGATAACACAAATTTCTGTATTTTTGGAACGGGTTCGTCATCAATATCACTTTTTGAGTTGTCGGATACCGAATCTACTTGTTCTTGAATCTTCTGACGCTGATCTGATGGAGGATTGAAGAAGAATAATTGAAGAAGAAGAAAAACAGACAGTGTCTTAATGTCTGCATCTTCAAATAGTCGTATTTTGGTTCCTAGAACAGCTA</canonical_amplicon>
		<polymorphic_amplicon>TTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAGTCATCAGATAACACAAATTTCTGTATTTTTGGAACGGGTTCGTCATCAMTATCACTTTTTGAGTTGTCGGATACCGAATCTACTTGTTCTTGAATCTTCTGACGCTGATCTGATGGAGGATTGAAGAAGAATAATTGAAGAAGAAGAAAAACAGACAGTGTCTTAATGTCTGCATCTTCAAATAGTCGTATTTTGGTTCCTAGAACAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7956</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>81840</contig_pos>
        <strand></strand>
        <context>ATCACTTTTT[G/C]AGTTGTCGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>ACACAAATTTCTGTATTTTTGGAACGGGTTCGTCATCAATATCACTTTTT</left_flank>
        <right_flank>AGTTGTCGGATACCGAATCTACTTGTTCTTGAATCTTCTGACGCTGATCT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATGTTTGGAAGTGGGGCTGAACAGGTAACTTTTTTCGGAAAAGCTGATAACAAGATTTTTCAGGACTATGCTTATAAAAACTTGAGATCTGCAGTGGGACAAATTTGCCACAATTAATAAAAATTCAACGAAAAATCTCACCGTGGTCATCTTCTGAATCTGATTCACCCCAAGCCATTCTGAGGCGGTTTTTGTTGAGTGATTGTTTTCGTTGAGCATTGTCATCTTCTGAGTCGTCCGAAATCACAAATAGTTGTATTTTTGGGATAGGTTCGTCATCACTATCACTTTCAGAGCTGCTGGAATCCATATCTACTCGATTCTGAATCTTTTGACTCTGATTCAAAGGAGGAGCTAAAAAATATTTGTTTTTCGAATTTGAAAGTTTTAGGAAACAACTTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAGTCATCAGATAACACAAATTTCTGTATTTTTGGAACGGGTTCGTCATCAATATCACTTTTTGAGTTGTCGGATACCGAATCTACTTGTTCTTGAATCTTCTGACGCTGATCTGATGGAGGATTGAAGAAGAATAATTGAAGAAGAAGAAAAACAGACAGTGTCTTAATGTCTGCATCTTCAAATAGTCGTATTTTGGTTCCTAGAACAGCTACAAAAAAACCTTTATTGTTAATGCTTCAAATTCAAAAAATGGCCGGTTCGGAATTTGCGCAGACATTCAGACGCTCTAACTGTCTGCGTTTCCATCTATTCAGATACTTTCAAATATTAAAATTTCCAAAAAGCATTTTTAAAAAAATTTTTAGAAACTTTCAAGAAAAATTATAAAACGAAAACTCGAAATGAATTATAGAAAAAAGACCTTATTTTTGTCTCAAAATTTCAGAAAAAAAAACCCGCGTAGCTGTTGATACTCACCTTCAGTAATCCTATTTTTCCTGATCTTCTGTCTCCGTGAGCTCACTTGCTTACTGAGTCTCTTATTTCCCTTACCACAGTTGT</canonical>
            <polymorphic>GTATGTTTGGAAGTGGGGCTGAACAGGTAACTTTTTTCGGAAAAGCTGATAACAAGATTTTTCAGGACTATGCTTATAAAAACTTGAGATCTGCAGTGGGACAAATTTGCCACAATTAATAAAAATTCAACGAAAAATCTCACCGTGGTCATCTTCTGAATCTGATTCACCCCAAGCCATTCTGAGGCGGTTTTTGTTGAGTGATTGTTTTCGTTGAGCATTGTCATCTTCTGAGTCGTCCGAAATCACAAATAGTTGTATTTTTGGGATAGGTTCGTCATCACTATCACTTTCAGAGCTGCTGGAATCCATATCTACTCGATTCTGAATCTTTTGACTCTGATTCAAAGGAGGAGCTAAAAAATATTTGTTTTTCGAATTTGAAAGTTTTAGGAAACAACTTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAGTCATCAGATAACACAAATTTCTGTATTTTTGGAACGGGTTCGTCATCAATATCACTTTTTSAGTTGTCGGATACCGAATCTACTTGTTCTTGAATCTTCTGACGCTGATCTGATGGAGGATTGAAGAAGAATAATTGAAGAAGAAGAAAAACAGACAGTGTCTTAATGTCTGCATCTTCAAATAGTCGTATTTTGGTTCCTAGAACAGCTACAAAAAAACCTTTATTGTTAATGCTTCAAATTCAAAAAATGGCCGGTTCGGAATTTGCGCAGACATTCAGACGCTCTAACTGTCTGCGTTTCCATCTATTCAGATACTTTCAAATATTAAAATTTCCAAAAAGCATTTTTAAAAAAATTTTTAGAAACTTTCAAGAAAAATTATAAAACGAAAACTCGAAATGAATTATAGAAAAAAGACCTTATTTTTGTCTCAAAATTTCAGAAAAAAAAACCCGCGTAGCTGTTGATACTCACCTTCAGTAATCCTATTTTTCCTGATCTTCTGTCTCCGTGAGCTCACTTGCTTACTGAGTCTCTTATTTCCCTTACCACAGTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTCATCGTCAGAATCTTG</pcr_primer_p1>
		<pcr_primer_p2>TAGCTGTTCTAGGAACCAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAGTCATCAGATAACACAAATTTCTGTATTTTTGGAACGGGTTCGTCATCAATATCACTTTTTGAGTTGTCGGATACCGAATCTACTTGTTCTTGAATCTTCTGACGCTGATCTGATGGAGGATTGAAGAAGAATAATTGAAGAAGAAGAAAAACAGACAGTGTCTTAATGTCTGCATCTTCAAATAGTCGTATTTTGGTTCCTAGAACAGCTA</canonical_amplicon>
		<polymorphic_amplicon>TTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAGTCATCAGATAACACAAATTTCTGTATTTTTGGAACGGGTTCGTCATCAATATCACTTTTTSAGTTGTCGGATACCGAATCTACTTGTTCTTGAATCTTCTGACGCTGATCTGATGGAGGATTGAAGAAGAATAATTGAAGAAGAAGAAAAACAGACAGTGTCTTAATGTCTGCATCTTCAAATAGTCGTATTTTGGTTCCTAGAACAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7963</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>81998</contig_pos>
        <strand></strand>
        <context>CTACAAAAAA[A/G]CCTTTATTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGCATCTTCAAATAGTCGTATTTTGGTTCCTAGAACAGCTACAAAAAA</left_flank>
        <right_flank>CCTTTATTGTTAATGCTTCAAATTCAAAAAATGGCCGGTTCGGAATTTGC</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCTGATTCACCCCAAGCCATTCTGAGGCGGTTTTTGTTGAGTGATTGTTTTCGTTGAGCATTGTCATCTTCTGAGTCGTCCGAAATCACAAATAGTTGTATTTTTGGGATAGGTTCGTCATCACTATCACTTTCAGAGCTGCTGGAATCCATATCTACTCGATTCTGAATCTTTTGACTCTGATTCAAAGGAGGAGCTAAAAAATATTTGTTTTTCGAATTTGAAAGTTTTAGGAAACAACTTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAGTCATCAGATAACACAAATTTCTGTATTTTTGGAACGGGTTCGTCATCAATATCACTTTTTGAGTTGTCGGATACCGAATCTACTTGTTCTTGAATCTTCTGACGCTGATCTGATGGAGGATTGAAGAAGAATAATTGAAGAAGAAGAAAAACAGACAGTGTCTTAATGTCTGCATCTTCAAATAGTCGTATTTTGGTTCCTAGAACAGCTACAAAAAAACCTTTATTGTTAATGCTTCAAATTCAAAAAATGGCCGGTTCGGAATTTGCGCAGACATTCAGACGCTCTAACTGTCTGCGTTTCCATCTATTCAGATACTTTCAAATATTAAAATTTCCAAAAAGCATTTTTAAAAAAATTTTTAGAAACTTTCAAGAAAAATTATAAAACGAAAACTCGAAATGAATTATAGAAAAAAGACCTTATTTTTGTCTCAAAATTTCAGAAAAAAAAACCCGCGTAGCTGTTGATACTCACCTTCAGTAATCCTATTTTTCCTGATCTTCTGTCTCCGTGAGCTCACTTGCTTACTGAGTCTCTTATTTCCCTTACCACAGTTGTCCATCGCAGATTTTTCTGAAAAAAGTGTTATTTAAATTTCGATCTCAGTGTTGTGAAAATCAGAAATTGTAATCAGTATACAAAAAATACGATAGGGAGTAAAATATGTGAGCATCGGAACATCATTTTAAATCAAATTTCCCAATTTTTGTTTCAAA</canonical>
            <polymorphic>AATCTGATTCACCCCAAGCCATTCTGAGGCGGTTTTTGTTGAGTGATTGTTTTCGTTGAGCATTGTCATCTTCTGAGTCGTCCGAAATCACAAATAGTTGTATTTTTGGGATAGGTTCGTCATCACTATCACTTTCAGAGCTGCTGGAATCCATATCTACTCGATTCTGAATCTTTTGACTCTGATTCAAAGGAGGAGCTAAAAAATATTTGTTTTTCGAATTTGAAAGTTTTAGGAAACAACTTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAGTCATCAGATAACACAAATTTCTGTATTTTTGGAACGGGTTCGTCATCAATATCACTTTTTGAGTTGTCGGATACCGAATCTACTTGTTCTTGAATCTTCTGACGCTGATCTGATGGAGGATTGAAGAAGAATAATTGAAGAAGAAGAAAAACAGACAGTGTCTTAATGTCTGCATCTTCAAATAGTCGTATTTTGGTTCCTAGAACAGCTACAAAAAARCCTTTATTGTTAATGCTTCAAATTCAAAAAATGGCCGGTTCGGAATTTGCGCAGACATTCAGACGCTCTAACTGTCTGCGTTTCCATCTATTCAGATACTTTCAAATATTAAAATTTCCAAAAAGCATTTTTAAAAAAATTTTTAGAAACTTTCAAGAAAAATTATAAAACGAAAACTCGAAATGAATTATAGAAAAAAGACCTTATTTTTGTCTCAAAATTTCAGAAAAAAAAACCCGCGTAGCTGTTGATACTCACCTTCAGTAATCCTATTTTTCCTGATCTTCTGTCTCCGTGAGCTCACTTGCTTACTGAGTCTCTTATTTCCCTTACCACAGTTGTCCATCGCAGATTTTTCTGAAAAAAGTGTTATTTAAATTTCGATCTCAGTGTTGTGAAAATCAGAAATTGTAATCAGTATACAAAAAATACGATAGGGAGTAAAATATGTGAGCATCGGAACATCATTTTAAATCAAATTTCCCAATTTTTGTTTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGTCTTAATGTCTGCATCTTC</pcr_primer_p1>
		<pcr_primer_p2>TCATTTCGAGTTTTCGTTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGTGTCTTAATGTCTGCATCTTCAAATAGTCGTATTTTGGTTCCTAGAACAGCTACAAAAAAACCTTTATTGTTAATGCTTCAAATTCAAAAAATGGCCGGTTCGGAATTTGCGCAGACATTCAGACGCTCTAACTGTCTGCGTTTCCATCTATTCAGATACTTTCAAATATTAAAATTTCCAAAAAGCATTTTTAAAAAAATTTTTAGAAACTTTCAAGAAAAATTATAAAACGAAAACTCGAAATGA</canonical_amplicon>
		<polymorphic_amplicon>AGTGTCTTAATGTCTGCATCTTCAAATAGTCGTATTTTGGTTCCTAGAACAGCTACAAAAAARCCTTTATTGTTAATGCTTCAAATTCAAAAAATGGCCGGTTCGGAATTTGCGCAGACATTCAGACGCTCTAACTGTCTGCGTTTCCATCTATTCAGATACTTTCAAATATTAAAATTTCCAAAAAGCATTTTTAAAAAAATTTTTAGAAACTTTCAAGAAAAATTATAAAACGAAAACTCGAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7970</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>82222</contig_pos>
        <strand></strand>
        <context>CTCAAAATTT[C/T]AGAAAAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACTCGAAATGAATTATAGAAAAAAGACCTTATTTTTGTCTCAAAATTT</left_flank>
        <right_flank>AGAAAAAAAAACCCGCGTAGCTGTTGATACTCACCTTCAGTAATCCTATT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAGTTTTAGGAAACAACTTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAGTCATCAGATAACACAAATTTCTGTATTTTTGGAACGGGTTCGTCATCAATATCACTTTTTGAGTTGTCGGATACCGAATCTACTTGTTCTTGAATCTTCTGACGCTGATCTGATGGAGGATTGAAGAAGAATAATTGAAGAAGAAGAAAAACAGACAGTGTCTTAATGTCTGCATCTTCAAATAGTCGTATTTTGGTTCCTAGAACAGCTACAAAAAAACCTTTATTGTTAATGCTTCAAATTCAAAAAATGGCCGGTTCGGAATTTGCGCAGACATTCAGACGCTCTAACTGTCTGCGTTTCCATCTATTCAGATACTTTCAAATATTAAAATTTCCAAAAAGCATTTTTAAAAAAATTTTTAGAAACTTTCAAGAAAAATTATAAAACGAAAACTCGAAATGAATTATAGAAAAAAGACCTTATTTTTGTCTCAAAATTTCAGAAAAAAAAACCCGCGTAGCTGTTGATACTCACCTTCAGTAATCCTATTTTTCCTGATCTTCTGTCTCCGTGAGCTCACTTGCTTACTGAGTCTCTTATTTCCCTTACCACAGTTGTCCATCGCAGATTTTTCTGAAAAAAGTGTTATTTAAATTTCGATCTCAGTGTTGTGAAAATCAGAAATTGTAATCAGTATACAAAAAATACGATAGGGAGTAAAATATGTGAGCATCGGAACATCATTTTAAATCAAATTTCCCAATTTTTGTTTCAAAATAAAGCTAATTTTCCGCTCTTCTATTTTACGCTTCAAAAATCGGCAAATCGATTTTTTTAGAAAAGTTTGAACATTAAGGGTCCTTGTTTATTTCAAGTCAACTCGAAATTTATCTGGGCAGTATTTTTGAGTTCACAACAAAAAATAGAGGGAAAACACCAATAAGACAAAGATAAAAGAATAATGCATAGGCGAAGAGAAGGCCTTTCTTTTTCTTTTTGA</canonical>
            <polymorphic>GAAAGTTTTAGGAAACAACTTTTGTCATCGTCAGAATCTTGCTCATCATCTTCTGAGTCATCAGATAACACAAATTTCTGTATTTTTGGAACGGGTTCGTCATCAATATCACTTTTTGAGTTGTCGGATACCGAATCTACTTGTTCTTGAATCTTCTGACGCTGATCTGATGGAGGATTGAAGAAGAATAATTGAAGAAGAAGAAAAACAGACAGTGTCTTAATGTCTGCATCTTCAAATAGTCGTATTTTGGTTCCTAGAACAGCTACAAAAAAACCTTTATTGTTAATGCTTCAAATTCAAAAAATGGCCGGTTCGGAATTTGCGCAGACATTCAGACGCTCTAACTGTCTGCGTTTCCATCTATTCAGATACTTTCAAATATTAAAATTTCCAAAAAGCATTTTTAAAAAAATTTTTAGAAACTTTCAAGAAAAATTATAAAACGAAAACTCGAAATGAATTATAGAAAAAAGACCTTATTTTTGTCTCAAAATTTYAGAAAAAAAAACCCGCGTAGCTGTTGATACTCACCTTCAGTAATCCTATTTTTCCTGATCTTCTGTCTCCGTGAGCTCACTTGCTTACTGAGTCTCTTATTTCCCTTACCACAGTTGTCCATCGCAGATTTTTCTGAAAAAAGTGTTATTTAAATTTCGATCTCAGTGTTGTGAAAATCAGAAATTGTAATCAGTATACAAAAAATACGATAGGGAGTAAAATATGTGAGCATCGGAACATCATTTTAAATCAAATTTCCCAATTTTTGTTTCAAAATAAAGCTAATTTTCCGCTCTTCTATTTTACGCTTCAAAAATCGGCAAATCGATTTTTTTAGAAAAGTTTGAACATTAAGGGTCCTTGTTTATTTCAAGTCAACTCGAAATTTATCTGGGCAGTATTTTTGAGTTCACAACAAAAAATAGAGGGAAAACACCAATAAGACAAAGATAAAAGAATAATGCATAGGCGAAGAGAAGGCCTTTCTTTTTCTTTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>265 150 134 131 63 55 45 33 33 31 21 19 11 9</canonical_bands>
                <polymorphic_bands>265 265 150 63 55 45 33 33 31 21 19 11 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATAAAACGAAAACTCGAAATG</pcr_primer_p1>
		<pcr_primer_p2>ACAATTTCTGATTTTCACAACAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTATAAAACGAAAACTCGAAATGAATTATAGAAAAAAGACCTTATTTTTGTCTCAAAATTTCAGAAAAAAAAACCCGCGTAGCTGTTGATACTCACCTTCAGTAATCCTATTTTTCCTGATCTTCTGTCTCCGTGAGCTCACTTGCTTACTGAGTCTCTTATTTCCCTTACCACAGTTGTCCATCGCAGATTTTTCTGAAAAAAGTGTTATTTAAATTTCGATCTCAGTGTTGTGAAAATCAGAAATTGT</canonical_amplicon>
		<polymorphic_amplicon>TTATAAAACGAAAACTCGAAATGAATTATAGAAAAAAGACCTTATTTTTGTCTCAAAATTTYAGAAAAAAAAACCCGCGTAGCTGTTGATACTCACCTTCAGTAATCCTATTTTTCCTGATCTTCTGTCTCCGTGAGCTCACTTGCTTACTGAGTCTCTTATTTCCCTTACCACAGTTGTCCATCGCAGATTTTTCTGAAAAAAGTGTTATTTAAATTTCGATCTCAGTGTTGTGAAAATCAGAAATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7975</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>85784</contig_pos>
        <strand></strand>
        <context>CACCTTGTTT[C/A]CCTAAAATAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTCTCGTAGATTGATGTCATTCTACGTTTACGTTTCTTCCACCTTGTTT</left_flank>
        <right_flank>CCTAAAATACCTTCGATTATATTTTTATAGTATCCAACTCTCGATCAGCC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACGTGCGCAGATGAGGTAGACGGCCAGACACATGACCTCTTACTGTTCGCATAAATTGGCAGCCAGTTGGACACAAATGACCCACACGGACCCGCACGGCTCCTCTGGACGATGCCATTTTTTTTCCATTGGATACTTCAGAAAATAATATGACGATTTCTCACATTTCGTCTGATGCCGTTTATCTCCAAACGTTTCCTATTTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAATCAGTATTTCAGCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTGCTAATCCCTTTTTCGTTAATATTTTGCTAATCGAAATCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACCTCTTGCGTACAACGCCGCCAAGTTCGAATTAGATGACGTTCTTACCTTTCTCGTAGATTGATGTCATTCTACGTTTACGTTTCTTCCACCTTGTTTCCCTAAAATACCTTCGATTATATTTTTATAGTATCCAACTCTCGATCAGCCTTTATTTTCACTAAAATCGTTTTTTAGGATTCGGCCGAAAATTTCTTACGAAGACCAATGTTTTCTGGTTCAAAGGAAGAGCAGACACTATCCGCATGTCTTACGCTACTGTGTAAGTAGGTCTCGCTTTCTCCCAAGAGACGGATAAGGAGGAATATGTGCGCAGGCCAGGCACGTGAATCCACACTGTTCCCATCGATTGGTAACTAGTTGCCATGAACTCGAATGACCCAGACTGAGCTTTCAATTGGAAGCTGCTCTACAATATCAACGTAAGTGCCCGAACACCTATAGTTCTTCCTCAACATGTTTTCAGAAAAGATCACGGCGGTTACTCACATTATCGGAGACAAAATAGTGAAAGAAACCTACCGGAATCGATCGATGCGGATCTTACAGTATTACAATCAGGAGTTCATGTGGCCGCTCTATCGAACAGAATCAGATGAC</canonical>
            <polymorphic>CAACGTGCGCAGATGAGGTAGACGGCCAGACACATGACCTCTTACTGTTCGCATAAATTGGCAGCCAGTTGGACACAAATGACCCACACGGACCCGCACGGCTCCTCTGGACGATGCCATTTTTTTTCCATTGGATACTTCAGAAAATAATATGACGATTTCTCACATTTCGTCTGATGCCGTTTATCTCCAAACGTTTCCTATTTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAATCAGTATTTCAGCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTGCTAATCCCTTTTTCGTTAATATTTTGCTAATCGAAATCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACCTCTTGCGTACAACGCCGCCAAGTTCGAATTAGATGACGTTCTTACCTTTCTCGTAGATTGATGTCATTCTACGTTTACGTTTCTTCCACCTTGTTTMCCTAAAATACCTTCGATTATATTTTTATAGTATCCAACTCTCGATCAGCCTTTATTTTCACTAAAATCGTTTTTTAGGATTCGGCCGAAAATTTCTTACGAAGACCAATGTTTTCTGGTTCAAAGGAAGAGCAGACACTATCCGCATGTCTTACGCTACTGTGTAAGTAGGTCTCGCTTTCTCCCAAGAGACGGATAAGGAGGAATATGTGCGCAGGCCAGGCACGTGAATCCACACTGTTCCCATCGATTGGTAACTAGTTGCCATGAACTCGAATGACCCAGACTGAGCTTTCAATTGGAAGCTGCTCTACAATATCAACGTAAGTGCCCGAACACCTATAGTTCTTCCTCAACATGTTTTCAGAAAAGATCACGGCGGTTACTCACATTATCGGAGACAAAATAGTGAAAGAAACCTACCGGAATCGATCGATGCGGATCTTACAGTATTACAATCAGGAGTTCATGTGGCCGCTCTATCGAACAGAATCAGATGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGATGACGTTCTTACCTTTCTC</pcr_primer_p1>
		<pcr_primer_p2>AAAGCGAGACCTACTTACACAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TAGATGACGTTCTTACCTTTCTCGTAGATTGATGTCATTCTACGTTTACGTTTCTTCCACCTTGTTTCCCTAAAATACCTTCGATTATATTTTTATAGTATCCAACTCTCGATCAGCCTTTATTTTCACTAAAATCGTTTTTTAGGATTCGGCCGAAAATTTCTTACGAAGACCAATGTTTTCTGGTTCAAAGGAAGAGCAGACACTATCCGCATGTCTTACGCTACTGTGTAAGTAGGTCTCGCTTT</canonical_amplicon>
		<polymorphic_amplicon>TAGATGACGTTCTTACCTTTCTCGTAGATTGATGTCATTCTACGTTTACGTTTCTTCCACCTTGTTTMCCTAAAATACCTTCGATTATATTTTTATAGTATCCAACTCTCGATCAGCCTTTATTTTCACTAAAATCGTTTTTTAGGATTCGGCCGAAAATTTCTTACGAAGACCAATGTTTTCTGGTTCAAAGGAAGAGCAGACACTATCCGCATGTCTTACGCTACTGTGTAAGTAGGTCTCGCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7976</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>85637</contig_pos>
        <strand></strand>
        <context>GCTAATCGAA[A/T]TCAAATACGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACGCAAAGACTTTTGCTAATCCCTTTTTCGTTAATATTTTGCTAATCGAA</left_flank>
        <right_flank>TCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGAAGAATGTTCTCCTGTTCAAAAGAGGGACAGAAAATATCTTTACCGATCAATACTATGCTAGTATGTGTGTAATGCGTGGTCCTCTCTTTTTTCCCAGCAGAAGGGCAAGGAGGACAAGGAGGAGCTATTCTGAGCTGCGTCGCAACGTGCGCAGATGAGGTAGACGGCCAGACACATGACCTCTTACTGTTCGCATAAATTGGCAGCCAGTTGGACACAAATGACCCACACGGACCCGCACGGCTCCTCTGGACGATGCCATTTTTTTTCCATTGGATACTTCAGAAAATAATATGACGATTTCTCACATTTCGTCTGATGCCGTTTATCTCCAAACGTTTCCTATTTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAATCAGTATTTCAGCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTGCTAATCCCTTTTTCGTTAATATTTTGCTAATCGAAATCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACCTCTTGCGTACAACGCCGCCAAGTTCGAATTAGATGACGTTCTTACCTTTCTCGTAGATTGATGTCATTCTACGTTTACGTTTCTTCCACCTTGTTTCCCTAAAATACCTTCGATTATATTTTTATAGTATCCAACTCTCGATCAGCCTTTATTTTCACTAAAATCGTTTTTTAGGATTCGGCCGAAAATTTCTTACGAAGACCAATGTTTTCTGGTTCAAAGGAAGAGCAGACACTATCCGCATGTCTTACGCTACTGTGTAAGTAGGTCTCGCTTTCTCCCAAGAGACGGATAAGGAGGAATATGTGCGCAGGCCAGGCACGTGAATCCACACTGTTCCCATCGATTGGTAACTAGTTGCCATGAACTCGAATGACCCAGACTGAGCTTTCAATTGGAAGCTGCTCTACAATATCAACGTAAGTGCCCGAACACCTATAGTTCTTCCTC</canonical>
            <polymorphic>TGGGAAGAATGTTCTCCTGTTCAAAAGAGGGACAGAAAATATCTTTACCGATCAATACTATGCTAGTATGTGTGTAATGCGTGGTCCTCTCTTTTTTCCCAGCAGAAGGGCAAGGAGGACAAGGAGGAGCTATTCTGAGCTGCGTCGCAACGTGCGCAGATGAGGTAGACGGCCAGACACATGACCTCTTACTGTTCGCATAAATTGGCAGCCAGTTGGACACAAATGACCCACACGGACCCGCACGGCTCCTCTGGACGATGCCATTTTTTTTCCATTGGATACTTCAGAAAATAATATGACGATTTCTCACATTTCGTCTGATGCCGTTTATCTCCAAACGTTTCCTATTTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAATCAGTATTTCAGCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTGCTAATCCCTTTTTCGTTAATATTTTGCTAATCGAAWTCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACCTCTTGCGTACAACGCCGCCAAGTTCGAATTAGATGACGTTCTTACCTTTCTCGTAGATTGATGTCATTCTACGTTTACGTTTCTTCCACCTTGTTTCCCTAAAATACCTTCGATTATATTTTTATAGTATCCAACTCTCGATCAGCCTTTATTTTCACTAAAATCGTTTTTTAGGATTCGGCCGAAAATTTCTTACGAAGACCAATGTTTTCTGGTTCAAAGGAAGAGCAGACACTATCCGCATGTCTTACGCTACTGTGTAAGTAGGTCTCGCTTTCTCCCAAGAGACGGATAAGGAGGAATATGTGCGCAGGCCAGGCACGTGAATCCACACTGTTCCCATCGATTGGTAACTAGTTGCCATGAACTCGAATGACCCAGACTGAGCTTTCAATTGGAAGCTGCTCTACAATATCAACGTAAGTGCCCGAACACCTATAGTTCTTCCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTTCCTATTTTTATTCTCATTT</pcr_primer_p1>
		<pcr_primer_p2>AAAGGTAAGAACGTCATCTAATTC</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>CGTTTCCTATTTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAATCAGTATTTCAGCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTGCTAATCCCTTTTTCGTTAATATTTTGCTAATCGAAATCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACCTCTTGCGTACAACGCCGCCAAGTTCGAATTAGATGACGTTCTTACCTTT</canonical_amplicon>
		<polymorphic_amplicon>CGTTTCCTATTTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAATCAGTATTTCAGCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTGCTAATCCCTTTTTCGTTAATATTTTGCTAATCGAAWTCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACCTCTTGCGTACAACGCCGCCAAGTTCGAATTAGATGACGTTCTTACCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7977</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>85609</contig_pos>
        <strand></strand>
        <context>TTKCTAATCC[C/T]TTTTTCGTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTGCTAATCC</left_flank>
        <right_flank>TTTTTCGTTAATATTTTGCTAATCGAAATCAAATACGCGCCAAAAAAGCC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCACACGGTCGAGTTCCGAGAGATTACTGGGAAGAATGTTCTCCTGTTCAAAAGAGGGACAGAAAATATCTTTACCGATCAATACTATGCTAGTATGTGTGTAATGCGTGGTCCTCTCTTTTTTCCCAGCAGAAGGGCAAGGAGGACAAGGAGGAGCTATTCTGAGCTGCGTCGCAACGTGCGCAGATGAGGTAGACGGCCAGACACATGACCTCTTACTGTTCGCATAAATTGGCAGCCAGTTGGACACAAATGACCCACACGGACCCGCACGGCTCCTCTGGACGATGCCATTTTTTTTCCATTGGATACTTCAGAAAATAATATGACGATTTCTCACATTTCGTCTGATGCCGTTTATCTCCAAACGTTTCCTATTTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAATCAGTATTTCAGCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTGCTAATCCCTTTTTCGTTAATATTTTGCTAATCGAAATCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACCTCTTGCGTACAACGCCGCCAAGTTCGAATTAGATGACGTTCTTACCTTTCTCGTAGATTGATGTCATTCTACGTTTACGTTTCTTCCACCTTGTTTCCCTAAAATACCTTCGATTATATTTTTATAGTATCCAACTCTCGATCAGCCTTTATTTTCACTAAAATCGTTTTTTAGGATTCGGCCGAAAATTTCTTACGAAGACCAATGTTTTCTGGTTCAAAGGAAGAGCAGACACTATCCGCATGTCTTACGCTACTGTGTAAGTAGGTCTCGCTTTCTCCCAAGAGACGGATAAGGAGGAATATGTGCGCAGGCCAGGCACGTGAATCCACACTGTTCCCATCGATTGGTAACTAGTTGCCATGAACTCGAATGACCCAGACTGAGCTTTCAATTGGAAGCTGCTCTACAATATCAACGTA</canonical>
            <polymorphic>ATCACACGGTCGAGTTCCGAGAGATTACTGGGAAGAATGTTCTCCTGTTCAAAAGAGGGACAGAAAATATCTTTACCGATCAATACTATGCTAGTATGTGTGTAATGCGTGGTCCTCTCTTTTTTCCCAGCAGAAGGGCAAGGAGGACAAGGAGGAGCTATTCTGAGCTGCGTCGCAACGTGCGCAGATGAGGTAGACGGCCAGACACATGACCTCTTACTGTTCGCATAAATTGGCAGCCAGTTGGACACAAATGACCCACACGGACCCGCACGGCTCCTCTGGACGATGCCATTTTTTTTCCATTGGATACTTCAGAAAATAATATGACGATTTCTCACATTTCGTCTGATGCCGTTTATCTCCAAACGTTTCCTATTTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAATCAGTATTTCAGCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTGCTAATCCYTTTTTCGTTAATATTTTGCTAATCGAAATCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACCTCTTGCGTACAACGCCGCCAAGTTCGAATTAGATGACGTTCTTACCTTTCTCGTAGATTGATGTCATTCTACGTTTACGTTTCTTCCACCTTGTTTCCCTAAAATACCTTCGATTATATTTTTATAGTATCCAACTCTCGATCAGCCTTTATTTTCACTAAAATCGTTTTTTAGGATTCGGCCGAAAATTTCTTACGAAGACCAATGTTTTCTGGTTCAAAGGAAGAGCAGACACTATCCGCATGTCTTACGCTACTGTGTAAGTAGGTCTCGCTTTCTCCCAAGAGACGGATAAGGAGGAATATGTGCGCAGGCCAGGCACGTGAATCCACACTGTTCCCATCGATTGGTAACTAGTTGCCATGAACTCGAATGACCCAGACTGAGCTTTCAATTGGAAGCTGCTCTACAATATCAACGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTTCCTATTTTTATTCTCATTT</pcr_primer_p1>
		<pcr_primer_p2>AAAGGTAAGAACGTCATCTAATTC</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>CGTTTCCTATTTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAATCAGTATTTCAGCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTGCTAATCCCTTTTTCGTTAATATTTTGCTAATCGAAATCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACCTCTTGCGTACAACGCCGCCAAGTTCGAATTAGATGACGTTCTTACCTTT</canonical_amplicon>
		<polymorphic_amplicon>CGTTTCCTATTTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAATCAGTATTTCAGCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTGCTAATCCYTTTTTCGTTAATATTTTGCTAATCGAAATCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACCTCTTGCGTACAACGCCGCCAAGTTCGAATTAGATGACGTTCTTACCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7978</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>85601</contig_pos>
        <strand></strand>
        <context>AAAGACTTTT[G/T]CTAATCCYTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTT</left_flank>
        <right_flank>CTAATCCCTTTTTCGTTAATATTTTGCTAATCGAAATCAAATACGCGCCA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTGATGATCACACGGTCGAGTTCCGAGAGATTACTGGGAAGAATGTTCTCCTGTTCAAAAGAGGGACAGAAAATATCTTTACCGATCAATACTATGCTAGTATGTGTGTAATGCGTGGTCCTCTCTTTTTTCCCAGCAGAAGGGCAAGGAGGACAAGGAGGAGCTATTCTGAGCTGCGTCGCAACGTGCGCAGATGAGGTAGACGGCCAGACACATGACCTCTTACTGTTCGCATAAATTGGCAGCCAGTTGGACACAAATGACCCACACGGACCCGCACGGCTCCTCTGGACGATGCCATTTTTTTTCCATTGGATACTTCAGAAAATAATATGACGATTTCTCACATTTCGTCTGATGCCGTTTATCTCCAAACGTTTCCTATTTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAATCAGTATTTCAGCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTGCTAATCCCTTTTTCGTTAATATTTTGCTAATCGAAATCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACCTCTTGCGTACAACGCCGCCAAGTTCGAATTAGATGACGTTCTTACCTTTCTCGTAGATTGATGTCATTCTACGTTTACGTTTCTTCCACCTTGTTTCCCTAAAATACCTTCGATTATATTTTTATAGTATCCAACTCTCGATCAGCCTTTATTTTCACTAAAATCGTTTTTTAGGATTCGGCCGAAAATTTCTTACGAAGACCAATGTTTTCTGGTTCAAAGGAAGAGCAGACACTATCCGCATGTCTTACGCTACTGTGTAAGTAGGTCTCGCTTTCTCCCAAGAGACGGATAAGGAGGAATATGTGCGCAGGCCAGGCACGTGAATCCACACTGTTCCCATCGATTGGTAACTAGTTGCCATGAACTCGAATGACCCAGACTGAGCTTTCAATTGGAAGCTGCTCTACAATA</canonical>
            <polymorphic>TGGTGATGATCACACGGTCGAGTTCCGAGAGATTACTGGGAAGAATGTTCTCCTGTTCAAAAGAGGGACAGAAAATATCTTTACCGATCAATACTATGCTAGTATGTGTGTAATGCGTGGTCCTCTCTTTTTTCCCAGCAGAAGGGCAAGGAGGACAAGGAGGAGCTATTCTGAGCTGCGTCGCAACGTGCGCAGATGAGGTAGACGGCCAGACACATGACCTCTTACTGTTCGCATAAATTGGCAGCCAGTTGGACACAAATGACCCACACGGACCCGCACGGCTCCTCTGGACGATGCCATTTTTTTTCCATTGGATACTTCAGAAAATAATATGACGATTTCTCACATTTCGTCTGATGCCGTTTATCTCCAAACGTTTCCTATTTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAATCAGTATTTCAGCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTKCTAATCCCTTTTTCGTTAATATTTTGCTAATCGAAATCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACCTCTTGCGTACAACGCCGCCAAGTTCGAATTAGATGACGTTCTTACCTTTCTCGTAGATTGATGTCATTCTACGTTTACGTTTCTTCCACCTTGTTTCCCTAAAATACCTTCGATTATATTTTTATAGTATCCAACTCTCGATCAGCCTTTATTTTCACTAAAATCGTTTTTTAGGATTCGGCCGAAAATTTCTTACGAAGACCAATGTTTTCTGGTTCAAAGGAAGAGCAGACACTATCCGCATGTCTTACGCTACTGTGTAAGTAGGTCTCGCTTTCTCCCAAGAGACGGATAAGGAGGAATATGTGCGCAGGCCAGGCACGTGAATCCACACTGTTCCCATCGATTGGTAACTAGTTGCCATGAACTCGAATGACCCAGACTGAGCTTTCAATTGGAAGCTGCTCTACAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTTCCTATTTTTATTCTCATTT</pcr_primer_p1>
		<pcr_primer_p2>AAAGGTAAGAACGTCATCTAATTC</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>CGTTTCCTATTTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAATCAGTATTTCAGCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTGCTAATCCCTTTTTCGTTAATATTTTGCTAATCGAAATCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACCTCTTGCGTACAACGCCGCCAAGTTCGAATTAGATGACGTTCTTACCTTT</canonical_amplicon>
		<polymorphic_amplicon>CGTTTCCTATTTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAATCAGTATTTCAGCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTKCTAATCCCTTTTTCGTTAATATTTTGCTAATCGAAATCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACCTCTTGCGTACAACGCCGCCAAGTTCGAATTAGATGACGTTCTTACCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7979</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>85553</contig_pos>
        <strand></strand>
        <context>GTATTTCAGC[A/G]AAAATTGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAATCAGTATTTCAGC</left_flank>
        <right_flank>AAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTGCT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGGACTTACATTTGAGAGCTATTTGCCAAGCGGAATTTTCGATTACTGGTGATGATCACACGGTCGAGTTCCGAGAGATTACTGGGAAGAATGTTCTCCTGTTCAAAAGAGGGACAGAAAATATCTTTACCGATCAATACTATGCTAGTATGTGTGTAATGCGTGGTCCTCTCTTTTTTCCCAGCAGAAGGGCAAGGAGGACAAGGAGGAGCTATTCTGAGCTGCGTCGCAACGTGCGCAGATGAGGTAGACGGCCAGACACATGACCTCTTACTGTTCGCATAAATTGGCAGCCAGTTGGACACAAATGACCCACACGGACCCGCACGGCTCCTCTGGACGATGCCATTTTTTTTCCATTGGATACTTCAGAAAATAATATGACGATTTCTCACATTTCGTCTGATGCCGTTTATCTCCAAACGTTTCCTATTTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAATCAGTATTTCAGCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTGCTAATCCCTTTTTCGTTAATATTTTGCTAATCGAAATCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACCTCTTGCGTACAACGCCGCCAAGTTCGAATTAGATGACGTTCTTACCTTTCTCGTAGATTGATGTCATTCTACGTTTACGTTTCTTCCACCTTGTTTCCCTAAAATACCTTCGATTATATTTTTATAGTATCCAACTCTCGATCAGCCTTTATTTTCACTAAAATCGTTTTTTAGGATTCGGCCGAAAATTTCTTACGAAGACCAATGTTTTCTGGTTCAAAGGAAGAGCAGACACTATCCGCATGTCTTACGCTACTGTGTAAGTAGGTCTCGCTTTCTCCCAAGAGACGGATAAGGAGGAATATGTGCGCAGGCCAGGCACGTGAATCCACACTGTTCCCATCGATTGGTAACTAGTTGCCATGA</canonical>
            <polymorphic>TCAGGACTTACATTTGAGAGCTATTTGCCAAGCGGAATTTTCGATTACTGGTGATGATCACACGGTCGAGTTCCGAGAGATTACTGGGAAGAATGTTCTCCTGTTCAAAAGAGGGACAGAAAATATCTTTACCGATCAATACTATGCTAGTATGTGTGTAATGCGTGGTCCTCTCTTTTTTCCCAGCAGAAGGGCAAGGAGGACAAGGAGGAGCTATTCTGAGCTGCGTCGCAACGTGCGCAGATGAGGTAGACGGCCAGACACATGACCTCTTACTGTTCGCATAAATTGGCAGCCAGTTGGACACAAATGACCCACACGGACCCGCACGGCTCCTCTGGACGATGCCATTTTTTTTCCATTGGATACTTCAGAAAATAATATGACGATTTCTCACATTTCGTCTGATGCCGTTTATCTCCAAACGTTTCCTATTTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAATCAGTATTTCAGCRAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTGCTAATCCCTTTTTCGTTAATATTTTGCTAATCGAAATCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACCTCTTGCGTACAACGCCGCCAAGTTCGAATTAGATGACGTTCTTACCTTTCTCGTAGATTGATGTCATTCTACGTTTACGTTTCTTCCACCTTGTTTCCCTAAAATACCTTCGATTATATTTTTATAGTATCCAACTCTCGATCAGCCTTTATTTTCACTAAAATCGTTTTTTAGGATTCGGCCGAAAATTTCTTACGAAGACCAATGTTTTCTGGTTCAAAGGAAGAGCAGACACTATCCGCATGTCTTACGCTACTGTGTAAGTAGGTCTCGCTTTCTCCCAAGAGACGGATAAGGAGGAATATGTGCGCAGGCCAGGCACGTGAATCCACACTGTTCCCATCGATTGGTAACTAGTTGCCATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTTCCTATTTTTATTCTCATTT</pcr_primer_p1>
		<pcr_primer_p2>AAAGGTAAGAACGTCATCTAATTC</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>CGTTTCCTATTTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAATCAGTATTTCAGCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTGCTAATCCCTTTTTCGTTAATATTTTGCTAATCGAAATCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACCTCTTGCGTACAACGCCGCCAAGTTCGAATTAGATGACGTTCTTACCTTT</canonical_amplicon>
		<polymorphic_amplicon>CGTTTCCTATTTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAATCAGTATTTCAGCRAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTGCTAATCCCTTTTTCGTTAATATTTTGCTAATCGAAATCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACCTCTTGCGTACAACGCCGCCAAGTTCGAATTAGATGACGTTCTTACCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7980</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>85541</contig_pos>
        <strand></strand>
        <context>CACAAACAWT[C/T]AGTATTTCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAAT</left_flank>
        <right_flank>AGTATTTCAGCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAAAACAATTTCAGGACTTACATTTGAGAGCTATTTGCCAAGCGGAATTTTCGATTACTGGTGATGATCACACGGTCGAGTTCCGAGAGATTACTGGGAAGAATGTTCTCCTGTTCAAAAGAGGGACAGAAAATATCTTTACCGATCAATACTATGCTAGTATGTGTGTAATGCGTGGTCCTCTCTTTTTTCCCAGCAGAAGGGCAAGGAGGACAAGGAGGAGCTATTCTGAGCTGCGTCGCAACGTGCGCAGATGAGGTAGACGGCCAGACACATGACCTCTTACTGTTCGCATAAATTGGCAGCCAGTTGGACACAAATGACCCACACGGACCCGCACGGCTCCTCTGGACGATGCCATTTTTTTTCCATTGGATACTTCAGAAAATAATATGACGATTTCTCACATTTCGTCTGATGCCGTTTATCTCCAAACGTTTCCTATTTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAATCAGTATTTCAGCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTGCTAATCCCTTTTTCGTTAATATTTTGCTAATCGAAATCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACCTCTTGCGTACAACGCCGCCAAGTTCGAATTAGATGACGTTCTTACCTTTCTCGTAGATTGATGTCATTCTACGTTTACGTTTCTTCCACCTTGTTTCCCTAAAATACCTTCGATTATATTTTTATAGTATCCAACTCTCGATCAGCCTTTATTTTCACTAAAATCGTTTTTTAGGATTCGGCCGAAAATTTCTTACGAAGACCAATGTTTTCTGGTTCAAAGGAAGAGCAGACACTATCCGCATGTCTTACGCTACTGTGTAAGTAGGTCTCGCTTTCTCCCAAGAGACGGATAAGGAGGAATATGTGCGCAGGCCAGGCACGTGAATCCACACTGTTCCCATCGATTGGTAAC</canonical>
            <polymorphic>AACAAAACAATTTCAGGACTTACATTTGAGAGCTATTTGCCAAGCGGAATTTTCGATTACTGGTGATGATCACACGGTCGAGTTCCGAGAGATTACTGGGAAGAATGTTCTCCTGTTCAAAAGAGGGACAGAAAATATCTTTACCGATCAATACTATGCTAGTATGTGTGTAATGCGTGGTCCTCTCTTTTTTCCCAGCAGAAGGGCAAGGAGGACAAGGAGGAGCTATTCTGAGCTGCGTCGCAACGTGCGCAGATGAGGTAGACGGCCAGACACATGACCTCTTACTGTTCGCATAAATTGGCAGCCAGTTGGACACAAATGACCCACACGGACCCGCACGGCTCCTCTGGACGATGCCATTTTTTTTCCATTGGATACTTCAGAAAATAATATGACGATTTCTCACATTTCGTCTGATGCCGTTTATCTCCAAACGTTTCCTATTTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAATYAGTATTTCAGCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTGCTAATCCCTTTTTCGTTAATATTTTGCTAATCGAAATCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACCTCTTGCGTACAACGCCGCCAAGTTCGAATTAGATGACGTTCTTACCTTTCTCGTAGATTGATGTCATTCTACGTTTACGTTTCTTCCACCTTGTTTCCCTAAAATACCTTCGATTATATTTTTATAGTATCCAACTCTCGATCAGCCTTTATTTTCACTAAAATCGTTTTTTAGGATTCGGCCGAAAATTTCTTACGAAGACCAATGTTTTCTGGTTCAAAGGAAGAGCAGACACTATCCGCATGTCTTACGCTACTGTGTAAGTAGGTCTCGCTTTCTCCCAAGAGACGGATAAGGAGGAATATGTGCGCAGGCCAGGCACGTGAATCCACACTGTTCCCATCGATTGGTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTTCCTATTTTTATTCTCATTT</pcr_primer_p1>
		<pcr_primer_p2>AAAGGTAAGAACGTCATCTAATTC</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>CGTTTCCTATTTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAATCAGTATTTCAGCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTGCTAATCCCTTTTTCGTTAATATTTTGCTAATCGAAATCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACCTCTTGCGTACAACGCCGCCAAGTTCGAATTAGATGACGTTCTTACCTTT</canonical_amplicon>
		<polymorphic_amplicon>CGTTTCCTATTTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAATYAGTATTTCAGCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTGCTAATCCCTTTTTCGTTAATATTTTGCTAATCGAAATCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACCTCTTGCGTACAACGCCGCCAAGTTCGAATTAGATGACGTTCTTACCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7981</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>85539</contig_pos>
        <strand></strand>
        <context>CTCACAAACA[A/T]TYAGTATTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACA</left_flank>
        <right_flank>TCAGTATTTCAGCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAACAAAACAATTTCAGGACTTACATTTGAGAGCTATTTGCCAAGCGGAATTTTCGATTACTGGTGATGATCACACGGTCGAGTTCCGAGAGATTACTGGGAAGAATGTTCTCCTGTTCAAAAGAGGGACAGAAAATATCTTTACCGATCAATACTATGCTAGTATGTGTGTAATGCGTGGTCCTCTCTTTTTTCCCAGCAGAAGGGCAAGGAGGACAAGGAGGAGCTATTCTGAGCTGCGTCGCAACGTGCGCAGATGAGGTAGACGGCCAGACACATGACCTCTTACTGTTCGCATAAATTGGCAGCCAGTTGGACACAAATGACCCACACGGACCCGCACGGCTCCTCTGGACGATGCCATTTTTTTTCCATTGGATACTTCAGAAAATAATATGACGATTTCTCACATTTCGTCTGATGCCGTTTATCTCCAAACGTTTCCTATTTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAATCAGTATTTCAGCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTGCTAATCCCTTTTTCGTTAATATTTTGCTAATCGAAATCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACCTCTTGCGTACAACGCCGCCAAGTTCGAATTAGATGACGTTCTTACCTTTCTCGTAGATTGATGTCATTCTACGTTTACGTTTCTTCCACCTTGTTTCCCTAAAATACCTTCGATTATATTTTTATAGTATCCAACTCTCGATCAGCCTTTATTTTCACTAAAATCGTTTTTTAGGATTCGGCCGAAAATTTCTTACGAAGACCAATGTTTTCTGGTTCAAAGGAAGAGCAGACACTATCCGCATGTCTTACGCTACTGTGTAAGTAGGTCTCGCTTTCTCCCAAGAGACGGATAAGGAGGAATATGTGCGCAGGCCAGGCACGTGAATCCACACTGTTCCCATCGATTGGTA</canonical>
            <polymorphic>AGAACAAAACAATTTCAGGACTTACATTTGAGAGCTATTTGCCAAGCGGAATTTTCGATTACTGGTGATGATCACACGGTCGAGTTCCGAGAGATTACTGGGAAGAATGTTCTCCTGTTCAAAAGAGGGACAGAAAATATCTTTACCGATCAATACTATGCTAGTATGTGTGTAATGCGTGGTCCTCTCTTTTTTCCCAGCAGAAGGGCAAGGAGGACAAGGAGGAGCTATTCTGAGCTGCGTCGCAACGTGCGCAGATGAGGTAGACGGCCAGACACATGACCTCTTACTGTTCGCATAAATTGGCAGCCAGTTGGACACAAATGACCCACACGGACCCGCACGGCTCCTCTGGACGATGCCATTTTTTTTCCATTGGATACTTCAGAAAATAATATGACGATTTCTCACATTTCGTCTGATGCCGTTTATCTCCAAACGTTTCCTATTTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAWTCAGTATTTCAGCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTGCTAATCCCTTTTTCGTTAATATTTTGCTAATCGAAATCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACCTCTTGCGTACAACGCCGCCAAGTTCGAATTAGATGACGTTCTTACCTTTCTCGTAGATTGATGTCATTCTACGTTTACGTTTCTTCCACCTTGTTTCCCTAAAATACCTTCGATTATATTTTTATAGTATCCAACTCTCGATCAGCCTTTATTTTCACTAAAATCGTTTTTTAGGATTCGGCCGAAAATTTCTTACGAAGACCAATGTTTTCTGGTTCAAAGGAAGAGCAGACACTATCCGCATGTCTTACGCTACTGTGTAAGTAGGTCTCGCTTTCTCCCAAGAGACGGATAAGGAGGAATATGTGCGCAGGCCAGGCACGTGAATCCACACTGTTCCCATCGATTGGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTTCCTATTTTTATTCTCATTT</pcr_primer_p1>
		<pcr_primer_p2>AAAGGTAAGAACGTCATCTAATTC</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>CGTTTCCTATTTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAATCAGTATTTCAGCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTGCTAATCCCTTTTTCGTTAATATTTTGCTAATCGAAATCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACCTCTTGCGTACAACGCCGCCAAGTTCGAATTAGATGACGTTCTTACCTTT</canonical_amplicon>
		<polymorphic_amplicon>CGTTTCCTATTTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAWTCAGTATTTCAGCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTGCTAATCCCTTTTTCGTTAATATTTTGCTAATCGAAATCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACCTCTTGCGTACAACGCCGCCAAGTTCGAATTAGATGACGTTCTTACCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7982</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>85457</contig_pos>
        <strand></strand>
        <context>TCACATTTYG[T/C]CTGATGCCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTTCCATTGGATACTTCAGAAAATAATATGACGATTTCTCACATTTCG</left_flank>
        <right_flank>CTGATGCCGTTTATCTCCAAACGTTTCCTATTTTTATTCTCATTTTAACT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTGTTAATCTTCGATTACTCTTGTTTTTGGTTCATTTATTGTTCGAAAAATAGGCAGTTTCTTTTCTTTCCAGCATAATAGAACAAAACAATTTCAGGACTTACATTTGAGAGCTATTTGCCAAGCGGAATTTTCGATTACTGGTGATGATCACACGGTCGAGTTCCGAGAGATTACTGGGAAGAATGTTCTCCTGTTCAAAAGAGGGACAGAAAATATCTTTACCGATCAATACTATGCTAGTATGTGTGTAATGCGTGGTCCTCTCTTTTTTCCCAGCAGAAGGGCAAGGAGGACAAGGAGGAGCTATTCTGAGCTGCGTCGCAACGTGCGCAGATGAGGTAGACGGCCAGACACATGACCTCTTACTGTTCGCATAAATTGGCAGCCAGTTGGACACAAATGACCCACACGGACCCGCACGGCTCCTCTGGACGATGCCATTTTTTTTCCATTGGATACTTCAGAAAATAATATGACGATTTCTCACATTTCGTCTGATGCCGTTTATCTCCAAACGTTTCCTATTTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAATCAGTATTTCAGCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTGCTAATCCCTTTTTCGTTAATATTTTGCTAATCGAAATCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACCTCTTGCGTACAACGCCGCCAAGTTCGAATTAGATGACGTTCTTACCTTTCTCGTAGATTGATGTCATTCTACGTTTACGTTTCTTCCACCTTGTTTCCCTAAAATACCTTCGATTATATTTTTATAGTATCCAACTCTCGATCAGCCTTTATTTTCACTAAAATCGTTTTTTAGGATTCGGCCGAAAATTTCTTACGAAGACCAATGTTTTCTGGTTCAAAGGAAGAGCAGACACTATCCGCATGTCTTACGCTACTGTGTAAGTAGGTC</canonical>
            <polymorphic>AAACTGTTAATCTTCGATTACTCTTGTTTTTGGTTCATTTATTGTTCGAAAAATAGGCAGTTTCTTTTCTTTCCAGCATAATAGAACAAAACAATTTCAGGACTTACATTTGAGAGCTATTTGCCAAGCGGAATTTTCGATTACTGGTGATGATCACACGGTCGAGTTCCGAGAGATTACTGGGAAGAATGTTCTCCTGTTCAAAAGAGGGACAGAAAATATCTTTACCGATCAATACTATGCTAGTATGTGTGTAATGCGTGGTCCTCTCTTTTTTCCCAGCAGAAGGGCAAGGAGGACAAGGAGGAGCTATTCTGAGCTGCGTCGCAACGTGCGCAGATGAGGTAGACGGCCAGACACATGACCTCTTACTGTTCGCATAAATTGGCAGCCAGTTGGACACAAATGACCCACACGGACCCGCACGGCTCCTCTGGACGATGCCATTTTTTTTCCATTGGATACTTCAGAAAATAATATGACGATTTCTCACATTTCGYCTGATGCCGTTTATCTCCAAACGTTTCCTATTTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAATCAGTATTTCAGCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTGCTAATCCCTTTTTCGTTAATATTTTGCTAATCGAAATCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACCTCTTGCGTACAACGCCGCCAAGTTCGAATTAGATGACGTTCTTACCTTTCTCGTAGATTGATGTCATTCTACGTTTACGTTTCTTCCACCTTGTTTCCCTAAAATACCTTCGATTATATTTTTATAGTATCCAACTCTCGATCAGCCTTTATTTTCACTAAAATCGTTTTTTAGGATTCGGCCGAAAATTTCTTACGAAGACCAATGTTTTCTGGTTCAAAGGAAGAGCAGACACTATCCGCATGTCTTACGCTACTGTGTAAGTAGGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>292 206 170 153 146 33</canonical_bands>
                <polymorphic_bands>292 239 170 153 146</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAGGAGGAGCTATTCTGAG</pcr_primer_p1>
		<pcr_primer_p2>GGGAAAGTTAAAATGAGAATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>ACAAGGAGGAGCTATTCTGAGCTGCGTCGCAACGTGCGCAGATGAGGTAGACGGCCAGACACATGACCTCTTACTGTTCGCATAAATTGGCAGCCAGTTGGACACAAATGACCCACACGGACCCGCACGGCTCCTCTGGACGATGCCATTTTTTTTCCATTGGATACTTCAGAAAATAATATGACGATTTCTCACATTTCGTCTGATGCCGTTTATCTCCAAACGTTTCCTATTTTTATTCTCATTTTAACTTTCCC</canonical_amplicon>
		<polymorphic_amplicon>ACAAGGAGGAGCTATTCTGAGCTGCGTCGCAACGTGCGCAGATGAGGTAGACGGCCAGACACATGACCTCTTACTGTTCGCATAAATTGGCAGCCAGTTGGACACAAATGACCCACACGGACCCGCACGGCTCCTCTGGACGATGCCATTTTTTTTCCATTGGATACTTCAGAAAATAATATGACGATTTCTCACATTTCGYCTGATGCCGTTTATCTCCAAACGTTTCCTATTTTTATTCTCATTTTAACTTTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7983</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>85455</contig_pos>
        <strand></strand>
        <context>TCTCACATTT[C/T]GYCTGATGCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTTCCATTGGATACTTCAGAAAATAATATGACGATTTCTCACATTT</left_flank>
        <right_flank>GTCTGATGCCGTTTATCTCCAAACGTTTCCTATTTTTATTCTCATTTTAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAACTGTTAATCTTCGATTACTCTTGTTTTTGGTTCATTTATTGTTCGAAAAATAGGCAGTTTCTTTTCTTTCCAGCATAATAGAACAAAACAATTTCAGGACTTACATTTGAGAGCTATTTGCCAAGCGGAATTTTCGATTACTGGTGATGATCACACGGTCGAGTTCCGAGAGATTACTGGGAAGAATGTTCTCCTGTTCAAAAGAGGGACAGAAAATATCTTTACCGATCAATACTATGCTAGTATGTGTGTAATGCGTGGTCCTCTCTTTTTTCCCAGCAGAAGGGCAAGGAGGACAAGGAGGAGCTATTCTGAGCTGCGTCGCAACGTGCGCAGATGAGGTAGACGGCCAGACACATGACCTCTTACTGTTCGCATAAATTGGCAGCCAGTTGGACACAAATGACCCACACGGACCCGCACGGCTCCTCTGGACGATGCCATTTTTTTTCCATTGGATACTTCAGAAAATAATATGACGATTTCTCACATTTCGTCTGATGCCGTTTATCTCCAAACGTTTCCTATTTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAATCAGTATTTCAGCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTGCTAATCCCTTTTTCGTTAATATTTTGCTAATCGAAATCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACCTCTTGCGTACAACGCCGCCAAGTTCGAATTAGATGACGTTCTTACCTTTCTCGTAGATTGATGTCATTCTACGTTTACGTTTCTTCCACCTTGTTTCCCTAAAATACCTTCGATTATATTTTTATAGTATCCAACTCTCGATCAGCCTTTATTTTCACTAAAATCGTTTTTTAGGATTCGGCCGAAAATTTCTTACGAAGACCAATGTTTTCTGGTTCAAAGGAAGAGCAGACACTATCCGCATGTCTTACGCTACTGTGTAAGTAGG</canonical>
            <polymorphic>CCAAACTGTTAATCTTCGATTACTCTTGTTTTTGGTTCATTTATTGTTCGAAAAATAGGCAGTTTCTTTTCTTTCCAGCATAATAGAACAAAACAATTTCAGGACTTACATTTGAGAGCTATTTGCCAAGCGGAATTTTCGATTACTGGTGATGATCACACGGTCGAGTTCCGAGAGATTACTGGGAAGAATGTTCTCCTGTTCAAAAGAGGGACAGAAAATATCTTTACCGATCAATACTATGCTAGTATGTGTGTAATGCGTGGTCCTCTCTTTTTTCCCAGCAGAAGGGCAAGGAGGACAAGGAGGAGCTATTCTGAGCTGCGTCGCAACGTGCGCAGATGAGGTAGACGGCCAGACACATGACCTCTTACTGTTCGCATAAATTGGCAGCCAGTTGGACACAAATGACCCACACGGACCCGCACGGCTCCTCTGGACGATGCCATTTTTTTTCCATTGGATACTTCAGAAAATAATATGACGATTTCTCACATTTYGTCTGATGCCGTTTATCTCCAAACGTTTCCTATTTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAATCAGTATTTCAGCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTGCTAATCCCTTTTTCGTTAATATTTTGCTAATCGAAATCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACCTCTTGCGTACAACGCCGCCAAGTTCGAATTAGATGACGTTCTTACCTTTCTCGTAGATTGATGTCATTCTACGTTTACGTTTCTTCCACCTTGTTTCCCTAAAATACCTTCGATTATATTTTTATAGTATCCAACTCTCGATCAGCCTTTATTTTCACTAAAATCGTTTTTTAGGATTCGGCCGAAAATTTCTTACGAAGACCAATGTTTTCTGGTTCAAAGGAAGAGCAGACACTATCCGCATGTCTTACGCTACTGTGTAAGTAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAGGAGGAGCTATTCTGAG</pcr_primer_p1>
		<pcr_primer_p2>GGGAAAGTTAAAATGAGAATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>ACAAGGAGGAGCTATTCTGAGCTGCGTCGCAACGTGCGCAGATGAGGTAGACGGCCAGACACATGACCTCTTACTGTTCGCATAAATTGGCAGCCAGTTGGACACAAATGACCCACACGGACCCGCACGGCTCCTCTGGACGATGCCATTTTTTTTCCATTGGATACTTCAGAAAATAATATGACGATTTCTCACATTTCGTCTGATGCCGTTTATCTCCAAACGTTTCCTATTTTTATTCTCATTTTAACTTTCCC</canonical_amplicon>
		<polymorphic_amplicon>ACAAGGAGGAGCTATTCTGAGCTGCGTCGCAACGTGCGCAGATGAGGTAGACGGCCAGACACATGACCTCTTACTGTTCGCATAAATTGGCAGCCAGTTGGACACAAATGACCCACACGGACCCGCACGGCTCCTCTGGACGATGCCATTTTTTTTCCATTGGATACTTCAGAAAATAATATGACGATTTCTCACATTTYGTCTGATGCCGTTTATCTCCAAACGTTTCCTATTTTTATTCTCATTTTAACTTTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7984</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>85419</contig_pos>
        <strand></strand>
        <context>TTTCCATTGG[A/G]TACTTCAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACACGGACCCGCACGGCTCCTCTGGACGATGCCATTTTTTTTCCATTGG</left_flank>
        <right_flank>TACTTCAGAAAATAATATGACGATTTCTCACATTTCGTCTGATGCCGTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCGATGAGGAATCGATAGAGAATTTATTGTTCTACCAAACTGTTAATCTTCGATTACTCTTGTTTTTGGTTCATTTATTGTTCGAAAAATAGGCAGTTTCTTTTCTTTCCAGCATAATAGAACAAAACAATTTCAGGACTTACATTTGAGAGCTATTTGCCAAGCGGAATTTTCGATTACTGGTGATGATCACACGGTCGAGTTCCGAGAGATTACTGGGAAGAATGTTCTCCTGTTCAAAAGAGGGACAGAAAATATCTTTACCGATCAATACTATGCTAGTATGTGTGTAATGCGTGGTCCTCTCTTTTTTCCCAGCAGAAGGGCAAGGAGGACAAGGAGGAGCTATTCTGAGCTGCGTCGCAACGTGCGCAGATGAGGTAGACGGCCAGACACATGACCTCTTACTGTTCGCATAAATTGGCAGCCAGTTGGACACAAATGACCCACACGGACCCGCACGGCTCCTCTGGACGATGCCATTTTTTTTCCATTGGATACTTCAGAAAATAATATGACGATTTCTCACATTTCGTCTGATGCCGTTTATCTCCAAACGTTTCCTATTTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAATCAGTATTTCAGCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTGCTAATCCCTTTTTCGTTAATATTTTGCTAATCGAAATCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACCTCTTGCGTACAACGCCGCCAAGTTCGAATTAGATGACGTTCTTACCTTTCTCGTAGATTGATGTCATTCTACGTTTACGTTTCTTCCACCTTGTTTCCCTAAAATACCTTCGATTATATTTTTATAGTATCCAACTCTCGATCAGCCTTTATTTTCACTAAAATCGTTTTTTAGGATTCGGCCGAAAATTTCTTACGAAGACCAATGTTTTCTGGTTCAAAGGAAGAGCAGA</canonical>
            <polymorphic>ATGCGATGAGGAATCGATAGAGAATTTATTGTTCTACCAAACTGTTAATCTTCGATTACTCTTGTTTTTGGTTCATTTATTGTTCGAAAAATAGGCAGTTTCTTTTCTTTCCAGCATAATAGAACAAAACAATTTCAGGACTTACATTTGAGAGCTATTTGCCAAGCGGAATTTTCGATTACTGGTGATGATCACACGGTCGAGTTCCGAGAGATTACTGGGAAGAATGTTCTCCTGTTCAAAAGAGGGACAGAAAATATCTTTACCGATCAATACTATGCTAGTATGTGTGTAATGCGTGGTCCTCTCTTTTTTCCCAGCAGAAGGGCAAGGAGGACAAGGAGGAGCTATTCTGAGCTGCGTCGCAACGTGCGCAGATGAGGTAGACGGCCAGACACATGACCTCTTACTGTTCGCATAAATTGGCAGCCAGTTGGACACAAATGACCCACACGGACCCGCACGGCTCCTCTGGACGATGCCATTTTTTTTCCATTGGRTACTTCAGAAAATAATATGACGATTTCTCACATTTCGTCTGATGCCGTTTATCTCCAAACGTTTCCTATTTTTATTCTCATTTTAACTTTCCCAACCCTCCAAAAAACGCTCACAAACAATCAGTATTTCAGCAAAAATTGAAAAGAATCTTATACTCAAAAATCGAACGCAAAGACTTTTGCTAATCCCTTTTTCGTTAATATTTTGCTAATCGAAATCAAATACGCGCCAAAAAAGCCCCTTCCGACCGCAAACACCTGGAACACCTCTTGCGTACAACGCCGCCAAGTTCGAATTAGATGACGTTCTTACCTTTCTCGTAGATTGATGTCATTCTACGTTTACGTTTCTTCCACCTTGTTTCCCTAAAATACCTTCGATTATATTTTTATAGTATCCAACTCTCGATCAGCCTTTATTTTCACTAAAATCGTTTTTTAGGATTCGGCCGAAAATTTCTTACGAAGACCAATGTTTTCTGGTTCAAAGGAAGAGCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAGGAGGAGCTATTCTGAG</pcr_primer_p1>
		<pcr_primer_p2>AAAATAGGAAACGTTTGGAGATA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>ACAAGGAGGAGCTATTCTGAGCTGCGTCGCAACGTGCGCAGATGAGGTAGACGGCCAGACACATGACCTCTTACTGTTCGCATAAATTGGCAGCCAGTTGGACACAAATGACCCACACGGACCCGCACGGCTCCTCTGGACGATGCCATTTTTTTTCCATTGGATACTTCAGAAAATAATATGACGATTTCTCACATTTCGTCTGATGCCGTTTATCTCCAAACGTTTCCTATTTT</canonical_amplicon>
		<polymorphic_amplicon>ACAAGGAGGAGCTATTCTGAGCTGCGTCGCAACGTGCGCAGATGAGGTAGACGGCCAGACACATGACCTCTTACTGTTCGCATAAATTGGCAGCCAGTTGGACACAAATGACCCACACGGACCCGCACGGCTCCTCTGGACGATGCCATTTTTTTTCCATTGGRTACTTCAGAAAATAATATGACGATTTCTCACATTTCGTCTGATGCCGTTTATCTCCAAACGTTTCCTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7985</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>223844</contig_pos>
        <strand>+</strand>
        <context>ctAAGTGCAT[G/T]TCWAAATTGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCAT</left_flank>
        <right_flank>TCTAAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTACTGTAGATCGGCGTTCTAACTATTTTTTTATTCTGGAAGGTCCACGAAACACAGTCCCGGTTAATAAGATATTCAAAACATATTTTTTTGTTGGCTTCCGGCTATTTTTACTATTTTCAGGGTTCCGAAACTTGGCTGTCAAGTTTCCAATCACTTTGAAAATTTTCGAGGGTCTGAAACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAATTTTCAAAACGTGAATTTTCATATTTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTTCGTATTTTGAGGAACAAATGATAAGCATCTACTGATCAAAAATGAAACATCGTTTGTTTGCCGTTGGTGGTGGTGACCAGCTGTCGAAAGTCATAATGTTCGCTTTTGAGAAAAAAAACACGCAATTTAGTTAACCTTCATTGTTCCCAGAATACAAGCGTCTATAATTTTTTTCAGACTGGATGTGAGC</canonical>
            <polymorphic>GATTACTGTAGATCGGCGTTCTAACTATTTTTTTATTCTGGAAGGTCCACGAAACACAGTCCCGGTTAATAAGATATTCAAAACATATTTTTTTGTTGGCTTCCGGCTATTTTTACTATTTTCAGGGTTCCGAAACTTGGCTGTCAAGTTTCCAATCACTTTGAAAATTTTCGAGGGTCTGAAACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATKTCTAAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAATTTTCAAAACGTGAATTTTCATATTTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTTCGTATTTTGAGGAACAAATGATAAGCATCTACTGATCAAAAATGAAACATCGTTTGTTTGCCGTTGGTGGTGGTGACCAGCTGTCGAAAGTCATAATGTTCGCTTTTGAGAAAAAAAACACGCAATTTAGTTAACCTTCATTGTTCCCAGAATACAAGCGTCTATAATTTTTTTCAGACTGGATGTGAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTATTCTGGAAGGTCCAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTCACGTAATGTTGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>524</pcr_amplicon_size>
		<canonical_amplicon>TTTTTATTCTGGAAGGTCCACGAAACACAGTCCCGGTTAATAAGATATTCAAAACATATTTTTTTGTTGGCTTCCGGCTATTTTTACTATTTTCAGGGTTCCGAAACTTGGCTGTCAAGTTTCCAATCACTTTGAAAATTTTCGAGGGTCTGAAACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTATTCTGGAAGGTCCACGAAACACAGTCCCGGTTAATAAGATATTCAAAACATATTTTTTTGTTGGCTTCCGGCTATTTTTACTATTTTCAGGGTTCCGAAACTTGGCTGTCAAGTTTCCAATCACTTTGAAAATTTTCGAGGGTCTGAAACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATKTCTAAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7986</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>223847</contig_pos>
        <strand>+</strand>
        <context>AGTGCATKTC[A/T]AAATTGCTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTC</left_flank>
        <right_flank>AAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTGTAGATCGGCGTTCTAACTATTTTTTTATTCTGGAAGGTCCACGAAACACAGTCCCGGTTAATAAGATATTCAAAACATATTTTTTTGTTGGCTTCCGGCTATTTTTACTATTTTCAGGGTTCCGAAACTTGGCTGTCAAGTTTCCAATCACTTTGAAAATTTTCGAGGGTCTGAAACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAATTTTCAAAACGTGAATTTTCATATTTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTTCGTATTTTGAGGAACAAATGATAAGCATCTACTGATCAAAAATGAAACATCGTTTGTTTGCCGTTGGTGGTGGTGACCAGCTGTCGAAAGTCATAATGTTCGCTTTTGAGAAAAAAAACACGCAATTTAGTTAACCTTCATTGTTCCCAGAATACAAGCGTCTATAATTTTTTTCAGACTGGATGTGAGCCCC</canonical>
            <polymorphic>TACTGTAGATCGGCGTTCTAACTATTTTTTTATTCTGGAAGGTCCACGAAACACAGTCCCGGTTAATAAGATATTCAAAACATATTTTTTTGTTGGCTTCCGGCTATTTTTACTATTTTCAGGGTTCCGAAACTTGGCTGTCAAGTTTCCAATCACTTTGAAAATTTTCGAGGGTCTGAAACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCWAAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAATTTTCAAAACGTGAATTTTCATATTTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTTCGTATTTTGAGGAACAAATGATAAGCATCTACTGATCAAAAATGAAACATCGTTTGTTTGCCGTTGGTGGTGGTGACCAGCTGTCGAAAGTCATAATGTTCGCTTTTGAGAAAAAAAACACGCAATTTAGTTAACCTTCATTGTTCCCAGAATACAAGCGTCTATAATTTTTTTCAGACTGGATGTGAGCCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTATTCTGGAAGGTCCAC</pcr_primer_p1>
		<pcr_primer_p2>GAATAAATCCGTCTGAGAAGAGT</pcr_primer_p2>
		<pcr_amplicon_size>588</pcr_amplicon_size>
		<canonical_amplicon>TTTTTATTCTGGAAGGTCCACGAAACACAGTCCCGGTTAATAAGATATTCAAAACATATTTTTTTGTTGGCTTCCGGCTATTTTTACTATTTTCAGGGTTCCGAAACTTGGCTGTCAAGTTTCCAATCACTTTGAAAATTTTCGAGGGTCTGAAACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAATTTTCAAAACGTGAATTTTCATATTTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTATTCTGGAAGGTCCACGAAACACAGTCCCGGTTAATAAGATATTCAAAACATATTTTTTTGTTGGCTTCCGGCTATTTTTACTATTTTCAGGGTTCCGAAACTTGGCTGTCAAGTTTCCAATCACTTTGAAAATTTTCGAGGGTCTGAAACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCWAAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAATTTTCAAAACGTGAATTTTCATATTTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7987</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>223898</contig_pos>
        <strand>+</strand>
        <context>TACGTGAAAA[A/T]TTTCAAAACG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAA</left_flank>
        <right_flank>TTTCAAAACGTGAATTTTCATATTTCTCCCCGAATGGATTACTCTTCTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACAGTCCCGGTTAATAAGATATTCAAAACATATTTTTTTGTTGGCTTCCGGCTATTTTTACTATTTTCAGGGTTCCGAAACTTGGCTGTCAAGTTTCCAATCACTTTGAAAATTTTCGAGGGTCTGAAACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAATTTTCAAAACGTGAATTTTCATATTTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTTCGTATTTTGAGGAACAAATGATAAGCATCTACTGATCAAAAATGAAACATCGTTTGTTTGCCGTTGGTGGTGGTGACCAGCTGTCGAAAGTCATAATGTTCGCTTTTGAGAAAAAAAACACGCAATTTAGTTAACCTTCATTGTTCCCAGAATACAAGCGTCTATAATTTTTTTCAGACTGGATGTGAGCCCCAAAAATTGAGAAAAGAGAAAATGAGCGCGTGCCTTGGGAGAAAAGATAAAT</canonical>
            <polymorphic>CACAGTCCCGGTTAATAAGATATTCAAAACATATTTTTTTGTTGGCTTCCGGCTATTTTTACTATTTTCAGGGTTCCGAAACTTGGCTGTCAAGTTTCCAATCACTTTGAAAATTTTCGAGGGTCTGAAACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAAWTTTCAAAACGTGAATTTTCATATTTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTTCGTATTTTGAGGAACAAATGATAAGCATCTACTGATCAAAAATGAAACATCGTTTGTTTGCCGTTGGTGGTGGTGACCAGCTGTCGAAAGTCATAATGTTCGCTTTTGAGAAAAAAAACACGCAATTTAGTTAACCTTCATTGTTCCCAGAATACAAGCGTCTATAATTTTTTTCAGACTGGATGTGAGCCCCAAAAATTGAGAAAAGAGAAAATGAGCGCGTGCCTTGGGAGAAAAGATAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>306 278 152 111 60 50 20 15 8</canonical_bands>
                <polymorphic_bands>306 278 152 111 60 50 35 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>157 114 111 99 74 60 53 50 48 47 42 31 27 25 20 15 15 8 4</canonical_bands>
                <polymorphic_bands>157 114 111 99 74 60 53 50 48 47 42 35 31 27 25 15 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTATTCTGGAAGGTCCAC</pcr_primer_p1>
		<pcr_primer_p2>GAATAAATCCGTCTGAGAAGAGT</pcr_primer_p2>
		<pcr_amplicon_size>588</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCAAAACGTGAATTTTCATATTTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTC</canonical_amplicon>
		<polymorphic_amplicon>AWTTTCAAAACGTGAATTTTCATATTTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7988</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>223921</contig_pos>
        <strand>+</strand>
        <context>AATTTTCATA[A/T]TTCTCCCCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTCAAATTTCCAACATTACGTGAAAATTTTCAAAACGTGAATTTTCATA</left_flank>
        <right_flank>TTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTCTATTTGGTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAACATATTTTTTTGTTGGCTTCCGGCTATTTTTACTATTTTCAGGGTTCCGAAACTTGGCTGTCAAGTTTCCAATCACTTTGAAAATTTTCGAGGGTCTGAAACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAATTTTCAAAACGTGAATTTTCATATTTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTTCGTATTTTGAGGAACAAATGATAAGCATCTACTGATCAAAAATGAAACATCGTTTGTTTGCCGTTGGTGGTGGTGACCAGCTGTCGAAAGTCATAATGTTCGCTTTTGAGAAAAAAAACACGCAATTTAGTTAACCTTCATTGTTCCCAGAATACAAGCGTCTATAATTTTTTTCAGACTGGATGTGAGCCCCAAAAATTGAGAAAAGAGAAAATGAGCGCGTGCCTTGGGAGAAAAGATAAATATATACTGGCACTGGCACTTTTG</canonical>
            <polymorphic>TCAAAACATATTTTTTTGTTGGCTTCCGGCTATTTTTACTATTTTCAGGGTTCCGAAACTTGGCTGTCAAGTTTCCAATCACTTTGAAAATTTTCGAGGGTCTGAAACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAATTTTCAAAACGTGAATTTTCATAWTTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTTCGTATTTTGAGGAACAAATGATAAGCATCTACTGATCAAAAATGAAACATCGTTTGTTTGCCGTTGGTGGTGGTGACCAGCTGTCGAAAGTCATAATGTTCGCTTTTGAGAAAAAAAACACGCAATTTAGTTAACCTTCATTGTTCCCAGAATACAAGCGTCTATAATTTTTTTCAGACTGGATGTGAGCCCCAAAAATTGAGAAAAGAGAAAATGAGCGCGTGCCTTGGGAGAAAAGATAAATATATACTGGCACTGGCACTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAGGAACAGAGCAGATGT</pcr_primer_p1>
		<pcr_primer_p2>CGATAGCGTAGGTGTTCTGTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAATTTTCAAAACGTGAATTTTCATATTTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCG</canonical_amplicon>
		<polymorphic_amplicon>CTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAATTTTCAAAACGTGAATTTTCATAWTTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7989</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>224027</contig_pos>
        <strand>+</strand>
        <context>GCCATTAACA[A/G]TACTGCCAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACA</left_flank>
        <right_flank>TACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAATTTTCAAAACGTGAATTTTCATATTTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTTCGTATTTTGAGGAACAAATGATAAGCATCTACTGATCAAAAATGAAACATCGTTTGTTTGCCGTTGGTGGTGGTGACCAGCTGTCGAAAGTCATAATGTTCGCTTTTGAGAAAAAAAACACGCAATTTAGTTAACCTTCATTGTTCCCAGAATACAAGCGTCTATAATTTTTTTCAGACTGGATGTGAGCCCCAAAAATTGAGAAAAGAGAAAATGAGCGCGTGCCTTGGGAGAAAAGATAAATATATACTGGCACTGGCACTTTTGAATCCAATTGTCTATTCCAAAAAAAGAGGAGTCTGCCGGGAGAACTGGCGGGAGAACCATGACATCGTGCTTCTTCCTATGACGACAGCTTCCATGGAATCAACAA</canonical>
            <polymorphic>ACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAATTTTCAAAACGTGAATTTTCATATTTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACARTACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTTCGTATTTTGAGGAACAAATGATAAGCATCTACTGATCAAAAATGAAACATCGTTTGTTTGCCGTTGGTGGTGGTGACCAGCTGTCGAAAGTCATAATGTTCGCTTTTGAGAAAAAAAACACGCAATTTAGTTAACCTTCATTGTTCCCAGAATACAAGCGTCTATAATTTTTTTCAGACTGGATGTGAGCCCCAAAAATTGAGAAAAGAGAAAATGAGCGCGTGCCTTGGGAGAAAAGATAAATATATACTGGCACTGGCACTTTTGAATCCAATTGTCTATTCCAAAAAAAGAGGAGTCTGCCGGGAGAACTGGCGGGAGAACCATGACATCGTGCTTCTTCCTATGACGACAGCTTCCATGGAATCAACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTACTCTTCTCAGACGGATTT</pcr_primer_p1>
		<pcr_primer_p2>TAGATGCTTATCATTTGTTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GATTACTCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTTCGTATTTTGAGGAACAAATGATAAGCATCTA</canonical_amplicon>
		<polymorphic_amplicon>GATTACTCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACARTACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTTCGTATTTTGAGGAACAAATGATAAGCATCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7990</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>224054</contig_pos>
        <strand>+</strand>
        <context>TCTAAAAACG[C/T]ATTCTAGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACG</left_flank>
        <right_flank>ATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAATTTTCAAAACGTGAATTTTCATATTTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTTCGTATTTTGAGGAACAAATGATAAGCATCTACTGATCAAAAATGAAACATCGTTTGTTTGCCGTTGGTGGTGGTGACCAGCTGTCGAAAGTCATAATGTTCGCTTTTGAGAAAAAAAACACGCAATTTAGTTAACCTTCATTGTTCCCAGAATACAAGCGTCTATAATTTTTTTCAGACTGGATGTGAGCCCCAAAAATTGAGAAAAGAGAAAATGAGCGCGTGCCTTGGGAGAAAAGATAAATATATACTGGCACTGGCACTTTTGAATCCAATTGTCTATTCCAAAAAAAGAGGAGTCTGCCGGGAGAACTGGCGGGAGAACCATGACATCGTGCTTCTTCCTATGACGACAGCTTCCATGGAATCAACAAAGTAGTAAAAAGTGGAAGGGAATTTTT</canonical>
            <polymorphic>CACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAATTTTCAAAACGTGAATTTTCATATTTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACGYATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTTCGTATTTTGAGGAACAAATGATAAGCATCTACTGATCAAAAATGAAACATCGTTTGTTTGCCGTTGGTGGTGGTGACCAGCTGTCGAAAGTCATAATGTTCGCTTTTGAGAAAAAAAACACGCAATTTAGTTAACCTTCATTGTTCCCAGAATACAAGCGTCTATAATTTTTTTCAGACTGGATGTGAGCCCCAAAAATTGAGAAAAGAGAAAATGAGCGCGTGCCTTGGGAGAAAAGATAAATATATACTGGCACTGGCACTTTTGAATCCAATTGTCTATTCCAAAAAAAGAGGAGTCTGCCGGGAGAACTGGCGGGAGAACCATGACATCGTGCTTCTTCCTATGACGACAGCTTCCATGGAATCAACAAAGTAGTAAAAAGTGGAAGGGAATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>503 335 145 17</canonical_bands>
                <polymorphic_bands>648 335 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTACTCTTCTCAGACGGATTT</pcr_primer_p1>
		<pcr_primer_p2>TAGATGCTTATCATTTGTTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GATTACTCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTTCGTATTTTGAGGAACAAATGATAAGCATCTA</canonical_amplicon>
		<polymorphic_amplicon>GATTACTCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACGYATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTTCGTATTTTGAGGAACAAATGATAAGCATCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7991</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>224134</contig_pos>
        <strand>+</strand>
        <context>TTGTCCATAC[C/G]CCAAAAATAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATAC</left_flank>
        <right_flank>CCAAAAATAGGATGACACTTCGTATTTTGAGGAACAAATGATAAGCATCT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAATTTTCAAAACGTGAATTTTCATATTTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTTCGTATTTTGAGGAACAAATGATAAGCATCTACTGATCAAAAATGAAACATCGTTTGTTTGCCGTTGGTGGTGGTGACCAGCTGTCGAAAGTCATAATGTTCGCTTTTGAGAAAAAAAACACGCAATTTAGTTAACCTTCATTGTTCCCAGAATACAAGCGTCTATAATTTTTTTCAGACTGGATGTGAGCCCCAAAAATTGAGAAAAGAGAAAATGAGCGCGTGCCTTGGGAGAAAAGATAAATATATACTGGCACTGGCACTTTTGAATCCAATTGTCTATTCCAAAAAAAGAGGAGTCTGCCGGGAGAACTGGCGGGAGAACCATGACATCGTGCTTCTTCCTATGACGACAGCTTCCATGGAATCAACAAAGTAGTAAAAAGTGGAAGGGAATTTTTCGAATCCTAAGGGATGATTCTCAAACTGTTTTCAAACCCCTAACTTTGAAAATTAGTTTTCTTTCTCTTTTCAAAAAGAA</canonical>
            <polymorphic>TGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAATTTTCAAAACGTGAATTTTCATATTTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACSCCAAAAATAGGATGACACTTCGTATTTTGAGGAACAAATGATAAGCATCTACTGATCAAAAATGAAACATCGTTTGTTTGCCGTTGGTGGTGGTGACCAGCTGTCGAAAGTCATAATGTTCGCTTTTGAGAAAAAAAACACGCAATTTAGTTAACCTTCATTGTTCCCAGAATACAAGCGTCTATAATTTTTTTCAGACTGGATGTGAGCCCCAAAAATTGAGAAAAGAGAAAATGAGCGCGTGCCTTGGGAGAAAAGATAAATATATACTGGCACTGGCACTTTTGAATCCAATTGTCTATTCCAAAAAAAGAGGAGTCTGCCGGGAGAACTGGCGGGAGAACCATGACATCGTGCTTCTTCCTATGACGACAGCTTCCATGGAATCAACAAAGTAGTAAAAAGTGGAAGGGAATTTTTCGAATCCTAAGGGATGATTCTCAAACTGTTTTCAAACCCCTAACTTTGAAAATTAGTTTTCTTTCTCTTTTCAAAAAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTCTCAGACGGATTTATTCTA</pcr_primer_p1>
		<pcr_primer_p2>TCAGTAGATGCTTATCATTTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTTCGTATTTTGAGGAACAAATGATAAGCATCTACTGA</canonical_amplicon>
		<polymorphic_amplicon>TCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACSCCAAAAATAGGATGACACTTCGTATTTTGAGGAACAAATGATAAGCATCTACTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7992</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>224155</contig_pos>
        <strand>+</strand>
        <context>GATGACACTT[C/T]GTATTTTGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTT</left_flank>
        <right_flank>GTATTTTGAGGAACAAATGATAAGCATCTACTGATCAAAAATGAAACATC</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAATTTTCAAAACGTGAATTTTCATATTTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTTCGTATTTTGAGGAACAAATGATAAGCATCTACTGATCAAAAATGAAACATCGTTTGTTTGCCGTTGGTGGTGGTGACCAGCTGTCGAAAGTCATAATGTTCGCTTTTGAGAAAAAAAACACGCAATTTAGTTAACCTTCATTGTTCCCAGAATACAAGCGTCTATAATTTTTTTCAGACTGGATGTGAGCCCCAAAAATTGAGAAAAGAGAAAATGAGCGCGTGCCTTGGGAGAAAAGATAAATATATACTGGCACTGGCACTTTTGAATCCAATTGTCTATTCCAAAAAAAGAGGAGTCTGCCGGGAGAACTGGCGGGAGAACCATGACATCGTGCTTCTTCCTATGACGACAGCTTCCATGGAATCAACAAAGTAGTAAAAAGTGGAAGGGAATTTTTCGAATCCTAAGGGATGATTCTCAAACTGTTTTCAAACCCCTAACTTTGAAAATTAGTTTTCTTTCTCTTTTCAAAAAGAACAGGTTTGGAAAAAAAATCAA</canonical>
            <polymorphic>GTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAATTTTCAAAACGTGAATTTTCATATTTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTTYGTATTTTGAGGAACAAATGATAAGCATCTACTGATCAAAAATGAAACATCGTTTGTTTGCCGTTGGTGGTGGTGACCAGCTGTCGAAAGTCATAATGTTCGCTTTTGAGAAAAAAAACACGCAATTTAGTTAACCTTCATTGTTCCCAGAATACAAGCGTCTATAATTTTTTTCAGACTGGATGTGAGCCCCAAAAATTGAGAAAAGAGAAAATGAGCGCGTGCCTTGGGAGAAAAGATAAATATATACTGGCACTGGCACTTTTGAATCCAATTGTCTATTCCAAAAAAAGAGGAGTCTGCCGGGAGAACTGGCGGGAGAACCATGACATCGTGCTTCTTCCTATGACGACAGCTTCCATGGAATCAACAAAGTAGTAAAAAGTGGAAGGGAATTTTTCGAATCCTAAGGGATGATTCTCAAACTGTTTTCAAACCCCTAACTTTGAAAATTAGTTTTCTTTCTCTTTTCAAAAAGAACAGGTTTGGAAAAAAAATCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTTCTACAGAACACCTACG</pcr_primer_p1>
		<pcr_primer_p2>CTTGTATTCTGGGAACAATGA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTTCGTATTTTGAGGAACAAATGATAAGCATCTACTGATCAAAAATGAAACATCGTTTGTTTGCCGTTGGTGGTGGTGACCAGCTGTCGAAAGTCATAATGTTCGCTTTTGAGAAAAAAAACACGCAATTTAGTTAACCTTCATTGTTCCCAGAATACAAG</canonical_amplicon>
		<polymorphic_amplicon>AAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTTYGTATTTTGAGGAACAAATGATAAGCATCTACTGATCAAAAATGAAACATCGTTTGTTTGCCGTTGGTGGTGGTGACCAGCTGTCGAAAGTCATAATGTTCGCTTTTGAGAAAAAAAACACGCAATTTAGTTAACCTTCATTGTTCCCAGAATACAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7993</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>227699</contig_pos>
        <strand>+</strand>
        <context>TGATTCTCAA[A/G]AAGAAGTTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATAAGACTCCATACATGGAACATTTTGCTATATGTTTCTGATTCTCAA</left_flank>
        <right_flank>AAGAAGTTGTTATTATCTTCTAAACAAGAAAAAACAAATCAAATCATAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGTCAGTTGACAACTTTTTGATATCTTTGATTGGAAATGAGATACATTGGCTCAAAGTTGACGGTTTGGATGGCGATCTAAAAGAGTGTGTTCACGGTATATTAGTTTCAGTATCAAAAACGCTATTTTATTGTAGTACATCAATGCTCAAAGACAATTCCCTCAACTTCTGAAACGCTGGAAGTGCTTCAAAAAGTTCAAATCAAACATTTTCTGTCAAAATGATCATGATTGTCTGTGAGAGGAAGAAAAAGTGGGAGGGCATGGCTCAAGGAAACCAAAAAAGAATGTAAACATTCTAAGGAAGAAAAATGCAATGGTGTCCATAAAAAAGGACATTGTTTGATTGTCTACCCACAAAGGTGTTAAAAACTTTCCTTCCTTAAAAATTGGTGGTTGTTCATTACAATGTTTGATCTTCGAAATCGGTTTATTATAGGAACACTACAATAAGACTCCATACATGGAACATTTTGCTATATGTTTCTGATTCTCAAGAAGAAGTTGTTATTATCTTCTAAACAAGAAAAAACAAATCAAATCATAACACACTCTGAAGACAAACGACTACTATCACTCTCAAAAAAATAGAGGAAACTGGAGCCTCAGAGCAGTCAGAGTCATCATTCATGTTGCTATTAATGAGATGGAAATTTGATATGATTTTGGTTCTGCGCCACAAAAACAAGCACAACGGGGGTGTGATAGCCTTCTCATTGTCCTTTCTAGTGTTCCTGTTGTTTTTTTCTGTTATTTTCTGACCACCAGCAGAAAATTGTTTTTCAGTGATGATCAAACAGCAATCATTTGTTTTGTTTTCAGACGAAATCCGATTTTTATCAGTTTAAAAATGGTTTTTTTGTCTCAGGAACTACAATTTTGGCTTCCAGCTCAAATCACCAAAAATAGAATAATCTGATATACTTAACCCAATTTTCTAAAATAAAGATCACTGAGAGATAGTACAAAATCGTACGAAAATCTGTCTACAAAAACAT</canonical>
            <polymorphic>TTTGTCAGTTGACAACTTTTTGATATCTTTGATTGGAAATGAGATACATTGGCTCAAAGTTGACGGTTTGGATGGCGATCTAAAAGAGTGTGTTCACGGTATATTAGTTTCAGTATCAAAAACGCTATTTTATTGTAGTACATCAATGCTCAAAGACAATTCCCTCAACTTCTGAAACGCTGGAAGTGCTTCAAAAAGTTCAAATCAAACATTTTCTGTCAAAATGATCATGATTGTCTGTGAGAGGAAGAAAAAGTGGGAGGGCATGGCTCAAGGAAACCAAAAAAGAATGTAAACATTCTAAGGAAGAAAAATGCAATGGTGTCCATAAAAAAGGACATTGTTTGATTGTCTACCCACAAAGGTGTTAAAAACTTTCCTTCCTTAAAAATTGGTGGTTGTTCATTACAATGTTTGATCTTCGAAATCGGTTTATTATAGGAACACTACAATAAGACTCCATACATGGAACATTTTGCTATATGTTTCTGATTCTCAARAAGAAGTTGTTATTATCTTCTAAACAAGAAAAAACAAATCAAATCATAACACACTCTGAAGACAAACGACTACTATCACTCTCAAAAAAATAGAGGAAACTGGAGCCTCAGAGCAGTCAGAGTCATCATTCATGTTGCTATTAATGAGATGGAAATTTGATATGATTTTGGTTCTGCGCCACAAAAACAAGCACAACGGGGGTGTGATAGCCTTCTCATTGTCCTTTCTAGTGTTCCTGTTGTTTTTTTCTGTTATTTTCTGACCACCAGCAGAAAATTGTTTTTCAGTGATGATCAAACAGCAATCATTTGTTTTGTTTTCAGACGAAATCCGATTTTTATCAGTTTAAAAATGGTTTTTTTGTCTCAGGAACTACAATTTTGGCTTCCAGCTCAAATCACCAAAAATAGAATAATCTGATATACTTAACCCAATTTTCTAAAATAAAGATCACTGAGAGATAGTACAAAATCGTACGAAAATCTGTCTACAAAAACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>371 268 229 132</canonical_bands>
                <polymorphic_bands>639 229 132</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>505 270 225</canonical_bands>
                <polymorphic_bands>730 270</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCTTCGAAATCGGTTTATTAT</pcr_primer_p1>
		<pcr_primer_p2>TCATATCAAATTTCCATCTCATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATCTTCGAAATCGGTTTATTATAGGAACACTACAATAAGACTCCATACATGGAACATTTTGCTATATGTTTCTGATTCTCAAGAAGAAGTTGTTATTATCTTCTAAACAAGAAAAAACAAATCAAATCATAACACACTCTGAAGACAAACGACTACTATCACTCTCAAAAAAATAGAGGAAACTGGAGCCTCAGAGCAGTCAGAGTCATCATTCATGTTGCTATTAATGAGATGGAAATTTGATATGA</canonical_amplicon>
		<polymorphic_amplicon>GATCTTCGAAATCGGTTTATTATAGGAACACTACAATAAGACTCCATACATGGAACATTTTGCTATATGTTTCTGATTCTCAARAAGAAGTTGTTATTATCTTCTAAACAAGAAAAAACAAATCAAATCATAACACACTCTGAAGACAAACGACTACTATCACTCTCAAAAAAATAGAGGAAACTGGAGCCTCAGAGCAGTCAGAGTCATCATTCATGTTGCTATTAATGAGATGGAAATTTGATATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7994</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>227579</contig_pos>
        <strand>+</strand>
        <context>AAAAACTTTC[A/C]TTCCTTAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAAAAGGACATTGTTTGATTGTCTACCCACAAAGGTGTTAAAAACTTTC</left_flank>
        <right_flank>TTCCTTAAAAATTGGTGGTTGTTCATTACAATGTTTGATCTTCGAAATCG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAAACACTCTAATAAAACGCCACGCGAACCGTTAAGTTTAAGCTCACATATCTCTTTTTCTGTAGAAAATATCAAAAAGTCACCAACTGATAAAATGTTGCTGATATTATGATAATATATTTGTCAGTTGACAACTTTTTGATATCTTTGATTGGAAATGAGATACATTGGCTCAAAGTTGACGGTTTGGATGGCGATCTAAAAGAGTGTGTTCACGGTATATTAGTTTCAGTATCAAAAACGCTATTTTATTGTAGTACATCAATGCTCAAAGACAATTCCCTCAACTTCTGAAACGCTGGAAGTGCTTCAAAAAGTTCAAATCAAACATTTTCTGTCAAAATGATCATGATTGTCTGTGAGAGGAAGAAAAAGTGGGAGGGCATGGCTCAAGGAAACCAAAAAAGAATGTAAACATTCTAAGGAAGAAAAATGCAATGGTGTCCATAAAAAAGGACATTGTTTGATTGTCTACCCACAAAGGTGTTAAAAACTTTCCTTCCTTAAAAATTGGTGGTTGTTCATTACAATGTTTGATCTTCGAAATCGGTTTATTATAGGAACACTACAATAAGACTCCATACATGGAACATTTTGCTATATGTTTCTGATTCTCAAGAAGAAGTTGTTATTATCTTCTAAACAAGAAAAAACAAATCAAATCATAACACACTCTGAAGACAAACGACTACTATCACTCTCAAAAAAATAGAGGAAACTGGAGCCTCAGAGCAGTCAGAGTCATCATTCATGTTGCTATTAATGAGATGGAAATTTGATATGATTTTGGTTCTGCGCCACAAAAACAAGCACAACGGGGGTGTGATAGCCTTCTCATTGTCCTTTCTAGTGTTCCTGTTGTTTTTTTCTGTTATTTTCTGACCACCAGCAGAAAATTGTTTTTCAGTGATGATCAAACAGCAATCATTTGTTTTGTTTTCAGACGAAATCCGATTTTTATCAGTTTAAAAATGGTTTTTTTGTCTCAGGAACTACAAT</canonical>
            <polymorphic>GTAAACACTCTAATAAAACGCCACGCGAACCGTTAAGTTTAAGCTCACATATCTCTTTTTCTGTAGAAAATATCAAAAAGTCACCAACTGATAAAATGTTGCTGATATTATGATAATATATTTGTCAGTTGACAACTTTTTGATATCTTTGATTGGAAATGAGATACATTGGCTCAAAGTTGACGGTTTGGATGGCGATCTAAAAGAGTGTGTTCACGGTATATTAGTTTCAGTATCAAAAACGCTATTTTATTGTAGTACATCAATGCTCAAAGACAATTCCCTCAACTTCTGAAACGCTGGAAGTGCTTCAAAAAGTTCAAATCAAACATTTTCTGTCAAAATGATCATGATTGTCTGTGAGAGGAAGAAAAAGTGGGAGGGCATGGCTCAAGGAAACCAAAAAAGAATGTAAACATTCTAAGGAAGAAAAATGCAATGGTGTCCATAAAAAAGGACATTGTTTGATTGTCTACCCACAAAGGTGTTAAAAACTTTCMTTCCTTAAAAATTGGTGGTTGTTCATTACAATGTTTGATCTTCGAAATCGGTTTATTATAGGAACACTACAATAAGACTCCATACATGGAACATTTTGCTATATGTTTCTGATTCTCAAGAAGAAGTTGTTATTATCTTCTAAACAAGAAAAAACAAATCAAATCATAACACACTCTGAAGACAAACGACTACTATCACTCTCAAAAAAATAGAGGAAACTGGAGCCTCAGAGCAGTCAGAGTCATCATTCATGTTGCTATTAATGAGATGGAAATTTGATATGATTTTGGTTCTGCGCCACAAAAACAAGCACAACGGGGGTGTGATAGCCTTCTCATTGTCCTTTCTAGTGTTCCTGTTGTTTTTTTCTGTTATTTTCTGACCACCAGCAGAAAATTGTTTTTCAGTGATGATCAAACAGCAATCATTTGTTTTGTTTTCAGACGAAATCCGATTTTTATCAGTTTAAAAATGGTTTTTTTGTCTCAGGAACTACAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATCATGATTGTCTGTGAGA</pcr_primer_p1>
		<pcr_primer_p2>TGTTCCATGTATGGAGTCTTATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGATCATGATTGTCTGTGAGAGGAAGAAAAAGTGGGAGGGCATGGCTCAAGGAAACCAAAAAAGAATGTAAACATTCTAAGGAAGAAAAATGCAATGGTGTCCATAAAAAAGGACATTGTTTGATTGTCTACCCACAAAGGTGTTAAAAACTTTCCTTCCTTAAAAATTGGTGGTTGTTCATTACAATGTTTGATCTTCGAAATCGGTTTATTATAGGAACACTACAATAAGACTCCATACATGGAACA</canonical_amplicon>
		<polymorphic_amplicon>ATGATCATGATTGTCTGTGAGAGGAAGAAAAAGTGGGAGGGCATGGCTCAAGGAAACCAAAAAAGAATGTAAACATTCTAAGGAAGAAAAATGCAATGGTGTCCATAAAAAAGGACATTGTTTGATTGTCTACCCACAAAGGTGTTAAAAACTTTCMTTCCTTAAAAATTGGTGGTTGTTCATTACAATGTTTGATCTTCGAAATCGGTTTATTATAGGAACACTACAATAAGACTCCATACATGGAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7995</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>227454</contig_pos>
        <strand>+</strand>
        <context>AGGAAGAAAA[A/G]GTGGGAGGGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAAACATTTTCTGTCAAAATGATCATGATTGTCTGTGAGAGGAAGAAAA</left_flank>
        <right_flank>GTGGGAGGGCATGGCTCAAGGAAACCAAAAAAGAATGTAAACATTCTAAG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAAAGAGTCTGAATAACTTTTAAACTCAGATTGTTGATGAAAATTTTAGGATAGGTTAAAAATAGATTATCAAGAAACTTTTGAAAATTTTAGAATCCGCTCTCCAGTTTTAGCCAAGTTACCGTAAACACTCTAATAAAACGCCACGCGAACCGTTAAGTTTAAGCTCACATATCTCTTTTTCTGTAGAAAATATCAAAAAGTCACCAACTGATAAAATGTTGCTGATATTATGATAATATATTTGTCAGTTGACAACTTTTTGATATCTTTGATTGGAAATGAGATACATTGGCTCAAAGTTGACGGTTTGGATGGCGATCTAAAAGAGTGTGTTCACGGTATATTAGTTTCAGTATCAAAAACGCTATTTTATTGTAGTACATCAATGCTCAAAGACAATTCCCTCAACTTCTGAAACGCTGGAAGTGCTTCAAAAAGTTCAAATCAAACATTTTCTGTCAAAATGATCATGATTGTCTGTGAGAGGAAGAAAAAGTGGGAGGGCATGGCTCAAGGAAACCAAAAAAGAATGTAAACATTCTAAGGAAGAAAAATGCAATGGTGTCCATAAAAAAGGACATTGTTTGATTGTCTACCCACAAAGGTGTTAAAAACTTTCCTTCCTTAAAAATTGGTGGTTGTTCATTACAATGTTTGATCTTCGAAATCGGTTTATTATAGGAACACTACAATAAGACTCCATACATGGAACATTTTGCTATATGTTTCTGATTCTCAAGAAGAAGTTGTTATTATCTTCTAAACAAGAAAAAACAAATCAAATCATAACACACTCTGAAGACAAACGACTACTATCACTCTCAAAAAAATAGAGGAAACTGGAGCCTCAGAGCAGTCAGAGTCATCATTCATGTTGCTATTAATGAGATGGAAATTTGATATGATTTTGGTTCTGCGCCACAAAAACAAGCACAACGGGGGTGTGATAGCCTTCTCATTGTCCTTTCTAGTGTTCCTGTTGTTTTTTTCTGTTA</canonical>
            <polymorphic>ACAAAAGAGTCTGAATAACTTTTAAACTCAGATTGTTGATGAAAATTTTAGGATAGGTTAAAAATAGATTATCAAGAAACTTTTGAAAATTTTAGAATCCGCTCTCCAGTTTTAGCCAAGTTACCGTAAACACTCTAATAAAACGCCACGCGAACCGTTAAGTTTAAGCTCACATATCTCTTTTTCTGTAGAAAATATCAAAAAGTCACCAACTGATAAAATGTTGCTGATATTATGATAATATATTTGTCAGTTGACAACTTTTTGATATCTTTGATTGGAAATGAGATACATTGGCTCAAAGTTGACGGTTTGGATGGCGATCTAAAAGAGTGTGTTCACGGTATATTAGTTTCAGTATCAAAAACGCTATTTTATTGTAGTACATCAATGCTCAAAGACAATTCCCTCAACTTCTGAAACGCTGGAAGTGCTTCAAAAAGTTCAAATCAAACATTTTCTGTCAAAATGATCATGATTGTCTGTGAGAGGAAGAAAARGTGGGAGGGCATGGCTCAAGGAAACCAAAAAAGAATGTAAACATTCTAAGGAAGAAAAATGCAATGGTGTCCATAAAAAAGGACATTGTTTGATTGTCTACCCACAAAGGTGTTAAAAACTTTCCTTCCTTAAAAATTGGTGGTTGTTCATTACAATGTTTGATCTTCGAAATCGGTTTATTATAGGAACACTACAATAAGACTCCATACATGGAACATTTTGCTATATGTTTCTGATTCTCAAGAAGAAGTTGTTATTATCTTCTAAACAAGAAAAAACAAATCAAATCATAACACACTCTGAAGACAAACGACTACTATCACTCTCAAAAAAATAGAGGAAACTGGAGCCTCAGAGCAGTCAGAGTCATCATTCATGTTGCTATTAATGAGATGGAAATTTGATATGATTTTGGTTCTGCGCCACAAAAACAAGCACAACGGGGGTGTGATAGCCTTCTCATTGTCCTTTCTAGTGTTCCTGTTGTTTTTTTCTGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAAAAGAGTGTGTTCACGGTAT</pcr_primer_p1>
		<pcr_primer_p2>ATTGCATTTTTCTTCCTTAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CTAAAAGAGTGTGTTCACGGTATATTAGTTTCAGTATCAAAAACGCTATTTTATTGTAGTACATCAATGCTCAAAGACAATTCCCTCAACTTCTGAAACGCTGGAAGTGCTTCAAAAAGTTCAAATCAAACATTTTCTGTCAAAATGATCATGATTGTCTGTGAGAGGAAGAAAAAGTGGGAGGGCATGGCTCAAGGAAACCAAAAAAGAATGTAAACATTCTAAGGAAGAAAAATGCAAT</canonical_amplicon>
		<polymorphic_amplicon>CTAAAAGAGTGTGTTCACGGTATATTAGTTTCAGTATCAAAAACGCTATTTTATTGTAGTACATCAATGCTCAAAGACAATTCCCTCAACTTCTGAAACGCTGGAAGTGCTTCAAAAAGTTCAAATCAAACATTTTCTGTCAAAATGATCATGATTGTCTGTGAGAGGAAGAAAARGTGGGAGGGCATGGCTCAAGGAAACCAAAAAAGAATGTAAACATTCTAAGGAAGAAAAATGCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7996</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>227342</contig_pos>
        <strand>+</strand>
        <context>TTGTAGTACA[G/T]CAATGCTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCACGGTATATTAGTTTCAGTATCAAAAACGCTATTTTATTGTAGTACA</left_flank>
        <right_flank>CAATGCTCAAAGACAATTCCCTCAACTTCTGAAACGCTGGAAGTGCTTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATGATCACATAACCACAAAAAACAAGTTGTACCAACACCACATCCAAGTTTCATCTTTTTTCTTCCTTCTTTTTTTTACAAAAGCCATAATCTATAGAGATAGCGATTAACAAAAGAGTCTGAATAACTTTTAAACTCAGATTGTTGATGAAAATTTTAGGATAGGTTAAAAATAGATTATCAAGAAACTTTTGAAAATTTTAGAATCCGCTCTCCAGTTTTAGCCAAGTTACCGTAAACACTCTAATAAAACGCCACGCGAACCGTTAAGTTTAAGCTCACATATCTCTTTTTCTGTAGAAAATATCAAAAAGTCACCAACTGATAAAATGTTGCTGATATTATGATAATATATTTGTCAGTTGACAACTTTTTGATATCTTTGATTGGAAATGAGATACATTGGCTCAAAGTTGACGGTTTGGATGGCGATCTAAAAGAGTGTGTTCACGGTATATTAGTTTCAGTATCAAAAACGCTATTTTATTGTAGTACATCAATGCTCAAAGACAATTCCCTCAACTTCTGAAACGCTGGAAGTGCTTCAAAAAGTTCAAATCAAACATTTTCTGTCAAAATGATCATGATTGTCTGTGAGAGGAAGAAAAAGTGGGAGGGCATGGCTCAAGGAAACCAAAAAAGAATGTAAACATTCTAAGGAAGAAAAATGCAATGGTGTCCATAAAAAAGGACATTGTTTGATTGTCTACCCACAAAGGTGTTAAAAACTTTCCTTCCTTAAAAATTGGTGGTTGTTCATTACAATGTTTGATCTTCGAAATCGGTTTATTATAGGAACACTACAATAAGACTCCATACATGGAACATTTTGCTATATGTTTCTGATTCTCAAGAAGAAGTTGTTATTATCTTCTAAACAAGAAAAAACAAATCAAATCATAACACACTCTGAAGACAAACGACTACTATCACTCTCAAAAAAATAGAGGAAACTGGAGCCTCAGAGCAGTCAGAGTCATCATTCATGTTGCTATTA</canonical>
            <polymorphic>GAAATGATCACATAACCACAAAAAACAAGTTGTACCAACACCACATCCAAGTTTCATCTTTTTTCTTCCTTCTTTTTTTTACAAAAGCCATAATCTATAGAGATAGCGATTAACAAAAGAGTCTGAATAACTTTTAAACTCAGATTGTTGATGAAAATTTTAGGATAGGTTAAAAATAGATTATCAAGAAACTTTTGAAAATTTTAGAATCCGCTCTCCAGTTTTAGCCAAGTTACCGTAAACACTCTAATAAAACGCCACGCGAACCGTTAAGTTTAAGCTCACATATCTCTTTTTCTGTAGAAAATATCAAAAAGTCACCAACTGATAAAATGTTGCTGATATTATGATAATATATTTGTCAGTTGACAACTTTTTGATATCTTTGATTGGAAATGAGATACATTGGCTCAAAGTTGACGGTTTGGATGGCGATCTAAAAGAGTGTGTTCACGGTATATTAGTTTCAGTATCAAAAACGCTATTTTATTGTAGTACAKCAATGCTCAAAGACAATTCCCTCAACTTCTGAAACGCTGGAAGTGCTTCAAAAAGTTCAAATCAAACATTTTCTGTCAAAATGATCATGATTGTCTGTGAGAGGAAGAAAAAGTGGGAGGGCATGGCTCAAGGAAACCAAAAAAGAATGTAAACATTCTAAGGAAGAAAAATGCAATGGTGTCCATAAAAAAGGACATTGTTTGATTGTCTACCCACAAAGGTGTTAAAAACTTTCCTTCCTTAAAAATTGGTGGTTGTTCATTACAATGTTTGATCTTCGAAATCGGTTTATTATAGGAACACTACAATAAGACTCCATACATGGAACATTTTGCTATATGTTTCTGATTCTCAAGAAGAAGTTGTTATTATCTTCTAAACAAGAAAAAACAAATCAAATCATAACACACTCTGAAGACAAACGACTACTATCACTCTCAAAAAAATAGAGGAAACTGGAGCCTCAGAGCAGTCAGAGTCATCATTCATGTTGCTATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAAAAGAGTGTGTTCACGGTAT</pcr_primer_p1>
		<pcr_primer_p2>ATTGCATTTTTCTTCCTTAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CTAAAAGAGTGTGTTCACGGTATATTAGTTTCAGTATCAAAAACGCTATTTTATTGTAGTACATCAATGCTCAAAGACAATTCCCTCAACTTCTGAAACGCTGGAAGTGCTTCAAAAAGTTCAAATCAAACATTTTCTGTCAAAATGATCATGATTGTCTGTGAGAGGAAGAAAAAGTGGGAGGGCATGGCTCAAGGAAACCAAAAAAGAATGTAAACATTCTAAGGAAGAAAAATGCAAT</canonical_amplicon>
		<polymorphic_amplicon>CTAAAAGAGTGTGTTCACGGTATATTAGTTTCAGTATCAAAAACGCTATTTTATTGTAGTACAKCAATGCTCAAAGACAATTCCCTCAACTTCTGAAACGCTGGAAGTGCTTCAAAAAGTTCAAATCAAACATTTTCTGTCAAAATGATCATGATTGTCTGTGAGAGGAAGAAAAAGTGGGAGGGCATGGCTCAAGGAAACCAAAAAAGAATGTAAACATTCTAAGGAAGAAAAATGCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7997</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>6848</contig_pos>
        <strand>+</strand>
        <context>CGGTTGTGAA[A/G]TACTCTTGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGTGCCTTTTTCGCCAGAGAGTTGTAAAGAAGGGAAAACGGTTGTGAA</left_flank>
        <right_flank>TACTCTTGGGAGTGCCAAAAAAAGTGTGAATGTTGTGGATATGTTCAAGA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAAGCCGGAATTCGATTCCACTAATGCTTGATGGGATAAATATGTTAAATTTTTGAACATACTAAAAATGTTTCAATTTTTGCTACAGAAACATTAAAATCAATCGAAGAGACAGGAGCATGTGGGCCAAAAACTGGCAGCGAAAACATTCACAGTACTGGACTACGAGAAGGGAAAGGTTTACTTTCGGAAATTCCGAGACACAATATGTATCAACTACTGAAACCGAAAACTTGATGATTGGAGAGAAAAAATTCGAGCGATAAAGAGGATCACAAGAAATTGATGAATTTGAACGAACGCGGGAAACGAGAGAGTACGCTGAACAGAGAGGACACAAACACAGCAACACGAATGACGCAGCCGATTTCCGTCGGGATTGAGAGGACGCGCCCATTTGCAATGCCGTGCACGGGGTTTCCGCAAGTCTGTCGCACATAGTTCCCCTTTTGTGCCTTTTTCGCCAGAGAGTTGTAAAGAAGGGAAAACGGTTGTGAAGTACTCTTGGGAGTGCCAAAAAAAGTGTGAATGTTGTGGATATGTTCAAGAAATTGATAAAACGAGAATCGAGAGTATTGATGAAAAAATTATTACGAAAAGAATTGGGTCACTTCAGAATGTGAATTGCCGGGAAACCCGGTTAGGAAGACCTTTTCGAAAAAAAGTTTTCCGATAGAGGAGTGAACATAAATATTTATTTAGAAATGTTTCTAAAAGTTAGTTGTTCAACATATGCATATTTGTAACATTTCAGAGAATGCATGAAAATCCAGAATTTTACGAACCTTTGTTTAAAACCACCAGCCAATTTATGACTCATAATTCTTCGACAAGGCACAGTATAGTATCATTTTTTTAGTACTCGTCGAGTTCTATCATATTAAATTTGATTGATCCAGAAAAATTGATTCCAAAAGAAACTTTGGTATGGAAAACTGTGATAACCTGTAAAAGAACGCCTCAATCATTGATGATTTTTCGAGAACAAGATTTTAGGCA</canonical>
            <polymorphic>GCAAGCCGGAATTCGATTCCACTAATGCTTGATGGGATAAATATGTTAAATTTTTGAACATACTAAAAATGTTTCAATTTTTGCTACAGAAACATTAAAATCAATCGAAGAGACAGGAGCATGTGGGCCAAAAACTGGCAGCGAAAACATTCACAGTACTGGACTACGAGAAGGGAAAGGTTTACTTTCGGAAATTCCGAGACACAATATGTATCAACTACTGAAACCGAAAACTTGATGATTGGAGAGAAAAAATTCGAGCGATAAAGAGGATCACAAGAAATTGATGAATTTGAACGAACGCGGGAAACGAGAGAGTACGCTGAACAGAGAGGACACAAACACAGCAACACGAATGACGCAGCCGATTTCCGTCGGGATTGAGAGGACGCGCCCATTTGCAATGCCGTGCACGGGGTTTCCGCAAGTCTGTCGCACATAGTTCCCCTTTTGTGCCTTTTTCGCCAGAGAGTTGTAAAGAAGGGAAAACGGTTGTGAARTACTCTTGGGAGTGCCAAAAAAAGTGTGAATGTTGTGGATATGTTCAAGAAATTGATAAAACGAGAATCGAGAGTATTGATGAAAAAATTATTACGAAAAGAATTGGGTCACTTCAGAATGTGAATTGCCGGGAAACCCGGTTAGGAAGACCTTTTCGAAAAAAAGTTTTCCGATAGAGGAGTGAACATAAATATTTATTTAGAAATGTTTCTAAAAGTTAGTTGTTCAACATATGCATATTTGTAACATTTCAGAGAATGCATGAAAATCCAGAATTTTACGAACCTTTGTTTAAAACCACCAGCCAATTTATGACTCATAATTCTTCGACAAGGCACAGTATAGTATCATTTTTTTAGTACTCGTCGAGTTCTATCATATTAAATTTGATTGATCCAGAAAAATTGATTCCAAAAGAAACTTTGGTATGGAAAACTGTGATAACCTGTAAAAGAACGCCTCAATCATTGATGATTTTTCGAGAACAAGATTTTAGGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGTACT</site>
                <isoschizomers>
                    <enzyme>Acc113I</enzyme>
                    <enzyme>ScaI</enzyme>
                </isoschizomers>
                <canonical_bands>360 344 157 139</canonical_bands>
                <polymorphic_bands>704 157 139</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>360 182 162 157 139</canonical_bands>
                <polymorphic_bands>542 162 157 139</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>360 344 155 141</canonical_bands>
                <polymorphic_bands>704 155 141</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGAGAGGACACAAACACAG</pcr_primer_p1>
		<pcr_primer_p2>TACTCTCGATTCTCGTTTTATCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACAGAGAGGACACAAACACAGCAACACGAATGACGCAGCCGATTTCCGTCGGGATTGAGAGGACGCGCCCATTTGCAATGCCGTGCACGGGGTTTCCGCAAGTCTGTCGCACATAGTTCCCCTTTTGTGCCTTTTTCGCCAGAGAGTTGTAAAGAAGGGAAAACGGTTGTGAAGTACTCTTGGGAGTGCCAAAAAAAGTGTGAATGTTGTGGATATGTTCAAGAAATTGATAAAACGAGAATCGAGAGTA</canonical_amplicon>
		<polymorphic_amplicon>ACAGAGAGGACACAAACACAGCAACACGAATGACGCAGCCGATTTCCGTCGGGATTGAGAGGACGCGCCCATTTGCAATGCCGTGCACGGGGTTTCCGCAAGTCTGTCGCACATAGTTCCCCTTTTGTGCCTTTTTCGCCAGAGAGTTGTAAAGAAGGGAAAACGGTTGTGAARTACTCTTGGGAGTGCCAAAAAAAGTGTGAATGTTGTGGATATGTTCAAGAAATTGATAAAACGAGAATCGAGAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7998</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>38702</contig_pos>
        <strand></strand>
        <context>TTATATTGAG[T/C]CCYTTTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACACCAACAAAGTTTCGTTTTGCAGGTCTCAAAAATATGGTTATATTGAG</left_flank>
        <right_flank>CCCTTTTTTCCAGCCACCGTTTTATTATTTCTAAGACAATGAGGTATAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAAATTTTGAAAGAAGAGAAACAGAAGAAATCAAATAATCAAGTTCTCTTTATGACTCTCTTTTCGACGGACTCTGGTAGTTCAACTCTTTCTTCCACTCCGCGTGGTCATGTCCGTCCGGACACATCGTCCATCAGCATCGGACGACGTGTTAGCAGTCAGAGTGGGCGCCACACTCCTCCTCTGGGGACGCCGACCATAATCCAGTCGAAGAGTCGCTGCTGGGTTCGGAAAGGAAGGAGCAGTCGAATGAGACGAACATTCCACACTGACAAAACACATCCGTCTTTGTGTCGCCGACAACTTTCCTCACAGGCCTTGCTTCATTTTTTTTTTTGAGTTTTTTTCTAGTCTAGTCTGATTGTTTAGCAGTATCGGGTTATTGAGTTCCACTCGACTTTTTAGGATTCCAGGATGCCATCGTCGCTTTTTGACAAAACATTATGGCACACCAACAAAGTTTCGTTTTGCAGGTCTCAAAAATATGGTTATATTGAGTCCCTTTTTTCCAGCCACCGTTTTATTATTTCTAAGACAATGAGGTATAGAAATGCGATGGTTCCAAGAAGTCGTTTGTAATTCAAATTTCTTCGTTTTTGTTTTTTTCTAGTATTCAAAAGAGATCTCGAGATTTTTCTGGGAATTCAATCGTTATACGCGTTATAAGCCAAATAATACATTGATGCCAAGAATGTAGTTGTCAAGAAAACCGTTTTCCACAGATCGGGGTCTTCTTCCGCAGGAGCTCTCCGTCAGCTTTCCCGGCACGATGACGTGATTCAGCTCGTCATCATTATCGCATTCTTTCTTCTTTCTTCCTCTTCTCTTCATTTGTATCTTCTGTTATATTTTTTGCGACATTTTGTAAGTGTGAAAAGAAATATTTTGTGGATTCTTTCTTTCGCGGTGGCCTGAAAAAAGGATAGAAAGTAGTTTCTGGACGACCCGAAGAAACCGCGCCGCCCTGTGAAGAACAAGAGCAGACACTTCTTTTTTGCT</canonical>
            <polymorphic>CGAAATTTTGAAAGAAGAGAAACAGAAGAAATCAAATAATCAAGTTCTCTTTATGACTCTCTTTTCGACGGACTCTGGTAGTTCAACTCTTTCTTCCACTCCGCGTGGTCATGTCCGTCCGGACACATCGTCCATCAGCATCGGACGACGTGTTAGCAGTCAGAGTGGGCGCCACACTCCTCCTCTGGGGACGCCGACCATAATCCAGTCGAAGAGTCGCTGCTGGGTTCGGAAAGGAAGGAGCAGTCGAATGAGACGAACATTCCACACTGACAAAACACATCCGTCTTTGTGTCGCCGACAACTTTCCTCACAGGCCTTGCTTCATTTTTTTTTTTGAGTTTTTTTCTAGTCTAGTCTGATTGTTTAGCAGTATCGGGTTATTGAGTTCCACTCGACTTTTTAGGATTCCAGGATGCCATCGTCGCTTTTTGACAAAACATTATGGCACACCAACAAAGTTTCGTTTTGCAGGTCTCAAAAATATGGTTATATTGAGYCCCTTTTTTCCAGCCACCGTTTTATTATTTCTAAGACAATGAGGTATAGAAATGCGATGGTTCCAAGAAGTCGTTTGTAATTCAAATTTCTTCGTTTTTGTTTTTTTCTAGTATTCAAAAGAGATCTCGAGATTTTTCTGGGAATTCAATCGTTATACGCGTTATAAGCCAAATAATACATTGATGCCAAGAATGTAGTTGTCAAGAAAACCGTTTTCCACAGATCGGGGTCTTCTTCCGCAGGAGCTCTCCGTCAGCTTTCCCGGCACGATGACGTGATTCAGCTCGTCATCATTATCGCATTCTTTCTTCTTTCTTCCTCTTCTCTTCATTTGTATCTTCTGTTATATTTTTTGCGACATTTTGTAAGTGTGAAAAGAAATATTTTGTGGATTCTTTCTTTCGCGGTGGCCTGAAAAAAGGATAGAAAGTAGTTTCTGGACGACCCGAAGAAACCGCGCCGCCCTGTGAAGAACAAGAGCAGACACTTCTTTTTTGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>281 193 143 114 108 90 55 16</canonical_bands>
                <polymorphic_bands>371 193 143 114 108 55 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTCTGATTGTTTAGCAGTATCG</pcr_primer_p1>
		<pcr_primer_p2>AAACAAAAACGAAGAAATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGTCTGATTGTTTAGCAGTATCGGGTTATTGAGTTCCACTCGACTTTTTAGGATTCCAGGATGCCATCGTCGCTTTTTGACAAAACATTATGGCACACCAACAAAGTTTCGTTTTGCAGGTCTCAAAAATATGGTTATATTGAGTCCCTTTTTTCCAGCCACCGTTTTATTATTTCTAAGACAATGAGGTATAGAAATGCGATGGTTCCAAGAAGTCGTTTGTAATTCAAATTTCTTCGTTTTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>AGTCTGATTGTTTAGCAGTATCGGGTTATTGAGTTCCACTCGACTTTTTAGGATTCCAGGATGCCATCGTCGCTTTTTGACAAAACATTATGGCACACCAACAAAGTTTCGTTTTGCAGGTCTCAAAAATATGGTTATATTGAGYCCCTTTTTTCCAGCCACCGTTTTATTATTTCTAAGACAATGAGGTATAGAAATGCGATGGTTCCAAGAAGTCGTTTGTAATTCAAATTTCTTCGTTTTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb7999</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>38879</contig_pos>
        <strand>+</strand>
        <context>AGCCAAATAA[C/T]ACATTGATGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGAGATTTTTCTGGGAATTCAATCGTTATACGCGTTATAAGCCAAATAA</left_flank>
        <right_flank>ACATTGATGCCAAGAATGTAGTTGTCAAGAAAACCGTTTTCCACAGATCG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTCCTCTGGGGACGCCGACCATAATCCAGTCGAAGAGTCGCTGCTGGGTTCGGAAAGGAAGGAGCAGTCGAATGAGACGAACATTCCACACTGACAAAACACATCCGTCTTTGTGTCGCCGACAACTTTCCTCACAGGCCTTGCTTCATTTTTTTTTTTGAGTTTTTTTCTAGTCTAGTCTGATTGTTTAGCAGTATCGGGTTATTGAGTTCCACTCGACTTTTTAGGATTCCAGGATGCCATCGTCGCTTTTTGACAAAACATTATGGCACACCAACAAAGTTTCGTTTTGCAGGTCTCAAAAATATGGTTATATTGAGTCCCTTTTTTCCAGCCACCGTTTTATTATTTCTAAGACAATGAGGTATAGAAATGCGATGGTTCCAAGAAGTCGTTTGTAATTCAAATTTCTTCGTTTTTGTTTTTTTCTAGTATTCAAAAGAGATCTCGAGATTTTTCTGGGAATTCAATCGTTATACGCGTTATAAGCCAAATAATACATTGATGCCAAGAATGTAGTTGTCAAGAAAACCGTTTTCCACAGATCGGGGTCTTCTTCCGCAGGAGCTCTCCGTCAGCTTTCCCGGCACGATGACGTGATTCAGCTCGTCATCATTATCGCATTCTTTCTTCTTTCTTCCTCTTCTCTTCATTTGTATCTTCTGTTATATTTTTTGCGACATTTTGTAAGTGTGAAAAGAAATATTTTGTGGATTCTTTCTTTCGCGGTGGCCTGAAAAAAGGATAGAAAGTAGTTTCTGGACGACCCGAAGAAACCGCGCCGCCCTGTGAAGAACAAGAGCAGACACTTCTTTTTTGCTGCTTCTTCCCCTTCTTCCTTCTTCTTCTTCTTACTCCTACTTTGTTTGGAAAGTGAGGGAGGAGTAGAAGCAAAGAATAGTAAGGATGGGGGGCTGGGCCCCCACTCGAGAAGACCTCCCATTCGTGATTATCACGTGATGTTCATTGTCTTTATAGAGATGACTACCACTACTATT</canonical>
            <polymorphic>TCCTCCTCTGGGGACGCCGACCATAATCCAGTCGAAGAGTCGCTGCTGGGTTCGGAAAGGAAGGAGCAGTCGAATGAGACGAACATTCCACACTGACAAAACACATCCGTCTTTGTGTCGCCGACAACTTTCCTCACAGGCCTTGCTTCATTTTTTTTTTTGAGTTTTTTTCTAGTCTAGTCTGATTGTTTAGCAGTATCGGGTTATTGAGTTCCACTCGACTTTTTAGGATTCCAGGATGCCATCGTCGCTTTTTGACAAAACATTATGGCACACCAACAAAGTTTCGTTTTGCAGGTCTCAAAAATATGGTTATATTGAGTCCCTTTTTTCCAGCCACCGTTTTATTATTTCTAAGACAATGAGGTATAGAAATGCGATGGTTCCAAGAAGTCGTTTGTAATTCAAATTTCTTCGTTTTTGTTTTTTTCTAGTATTCAAAAGAGATCTCGAGATTTTTCTGGGAATTCAATCGTTATACGCGTTATAAGCCAAATAAYACATTGATGCCAAGAATGTAGTTGTCAAGAAAACCGTTTTCCACAGATCGGGGTCTTCTTCCGCAGGAGCTCTCCGTCAGCTTTCCCGGCACGATGACGTGATTCAGCTCGTCATCATTATCGCATTCTTTCTTCTTTCTTCCTCTTCTCTTCATTTGTATCTTCTGTTATATTTTTTGCGACATTTTGTAAGTGTGAAAAGAAATATTTTGTGGATTCTTTCTTTCGCGGTGGCCTGAAAAAAGGATAGAAAGTAGTTTCTGGACGACCCGAAGAAACCGCGCCGCCCTGTGAAGAACAAGAGCAGACACTTCTTTTTTGCTGCTTCTTCCCCTTCTTCCTTCTTCTTCTTCTTACTCCTACTTTGTTTGGAAAGTGAGGGAGGAGTAGAAGCAAAGAATAGTAAGGATGGGGGGCTGGGCCCCCACTCGAGAAGACCTCCCATTCGTGATTATCACGTGATGTTCATTGTCTTTATAGAGATGACTACCACTACTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGTTTGTAATTCAAATTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>GAAAGAAGAAAGAATGCGATAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCGTTTGTAATTCAAATTTCTTCGTTTTTGTTTTTTTCTAGTATTCAAAAGAGATCTCGAGATTTTTCTGGGAATTCAATCGTTATACGCGTTATAAGCCAAATAATACATTGATGCCAAGAATGTAGTTGTCAAGAAAACCGTTTTCCACAGATCGGGGTCTTCTTCCGCAGGAGCTCTCCGTCAGCTTTCCCGGCACGATGACGTGATTCAGCTCGTCATCATTATCGCATTCTTTCTTCTTTC</canonical_amplicon>
		<polymorphic_amplicon>TCGTTTGTAATTCAAATTTCTTCGTTTTTGTTTTTTTCTAGTATTCAAAAGAGATCTCGAGATTTTTCTGGGAATTCAATCGTTATACGCGTTATAAGCCAAATAAYACATTGATGCCAAGAATGTAGTTGTCAAGAAAACCGTTTTCCACAGATCGGGGTCTTCTTCCGCAGGAGCTCTCCGTCAGCTTTCCCGGCACGATGACGTGATTCAGCTCGTCATCATTATCGCATTCTTTCTTCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8000</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>39660</contig_pos>
        <strand>+</strand>
        <context>AGGAGATAAA[A/G]AAGGAGGCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGCATATTCCCTTTGTGTTGAATTTCTTCTGGTGCGGCAGGAGATAAA</left_flank>
        <right_flank>AAGGAGGCAAAACATGGAAAACGAAAATGCATTTGGCAGATTAGTCGATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCCGCCCTGTGAAGAACAAGAGCAGACACTTCTTTTTTGCTGCTTCTTCCCCTTCTTCCTTCTTCTTCTTCTTACTCCTACTTTGTTTGGAAAGTGAGGGAGGAGTAGAAGCAAAGAATAGTAAGGATGGGGGGCTGGGCCCCCACTCGAGAAGACCTCCCATTCGTGATTATCACGTGATGTTCATTGTCTTTATAGAGATGACTACCACTACTATTGCTGTTGGCCTCAATTCTTCTCGAAAATTGTTTTTGAGGCACAGCAACAAACGGATCGAGAGGAAGAAAACTGGATTGTGCTTAATTACTGATTTGGCTGAAAATGTCTGAAAATATCTGGAATTGACTTGAAAAACAAGGGGCTTGATGAACTACGATGGATGCTCGTAATCCTCTTTTATTGGGGAATCTTGATCGCCGTCTCAAGCCAATTAACAAGAACCACGTAATTTGCATATTCCCTTTGTGTTGAATTTCTTCTGGTGCGGCAGGAGATAAAGAAGGAGGCAAAACATGGAAAACGAAAATGCATTTGGCAGATTAGTCGATTAGACGAAAAATGGACATACCGTAGGTTTATGGAGCCTTTCGTCGTCGTTGTCGTCCTACCAATCCAATCCAATCTGTTGAGTATTTCACAATGGAATTTGTGTGGAATATTTGGTTGATCTTGTTCTTTTTTGCTTCTCAAATGCGTCATTTAGCTTCCGTGCGTTTTTTTTCAATCGGGGAATACTTTCGGAGGACCACCGTTTCATCATCGTAAGAATGCCGTTTTAATGGTTCTCTTATTCTCCTGCCGTGTGCGTCAATCCAGAGAGTACGTTTCCTGGGTCCCGGGGCGCCGTGTTTCTGAGTTGATCCAAAAAGACATGAAGATGACGGGTCTTTTGAATTCAGAAATTTAATGACTCGTGAACGACAGAGCTGTGAAGAAGTGAAACGGGGCGCCGCCGCAGGGCAAAATAGCTGGGAACATATTCAGCCACAGCTTAGAACA</canonical>
            <polymorphic>CGCCGCCCTGTGAAGAACAAGAGCAGACACTTCTTTTTTGCTGCTTCTTCCCCTTCTTCCTTCTTCTTCTTCTTACTCCTACTTTGTTTGGAAAGTGAGGGAGGAGTAGAAGCAAAGAATAGTAAGGATGGGGGGCTGGGCCCCCACTCGAGAAGACCTCCCATTCGTGATTATCACGTGATGTTCATTGTCTTTATAGAGATGACTACCACTACTATTGCTGTTGGCCTCAATTCTTCTCGAAAATTGTTTTTGAGGCACAGCAACAAACGGATCGAGAGGAAGAAAACTGGATTGTGCTTAATTACTGATTTGGCTGAAAATGTCTGAAAATATCTGGAATTGACTTGAAAAACAAGGGGCTTGATGAACTACGATGGATGCTCGTAATCCTCTTTTATTGGGGAATCTTGATCGCCGTCTCAAGCCAATTAACAAGAACCACGTAATTTGCATATTCCCTTTGTGTTGAATTTCTTCTGGTGCGGCAGGAGATAAARAAGGAGGCAAAACATGGAAAACGAAAATGCATTTGGCAGATTAGTCGATTAGACGAAAAATGGACATACCGTAGGTTTATGGAGCCTTTCGTCGTCGTTGTCGTCCTACCAATCCAATCCAATCTGTTGAGTATTTCACAATGGAATTTGTGTGGAATATTTGGTTGATCTTGTTCTTTTTTGCTTCTCAAATGCGTCATTTAGCTTCCGTGCGTTTTTTTTCAATCGGGGAATACTTTCGGAGGACCACCGTTTCATCATCGTAAGAATGCCGTTTTAATGGTTCTCTTATTCTCCTGCCGTGTGCGTCAATCCAGAGAGTACGTTTCCTGGGTCCCGGGGCGCCGTGTTTCTGAGTTGATCCAAAAAGACATGAAGATGACGGGTCTTTTGAATTCAGAAATTTAATGACTCGTGAACGACAGAGCTGTGAAGAAGTGAAACGGGGCGCCGCCGCAGGGCAAAATAGCTGGGAACATATTCAGCCACAGCTTAGAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATATCTGGAATTGACTTGAAA</pcr_primer_p1>
		<pcr_primer_p2>ATAAACCTACGGTATGTCCATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATATCTGGAATTGACTTGAAAAACAAGGGGCTTGATGAACTACGATGGATGCTCGTAATCCTCTTTTATTGGGGAATCTTGATCGCCGTCTCAAGCCAATTAACAAGAACCACGTAATTTGCATATTCCCTTTGTGTTGAATTTCTTCTGGTGCGGCAGGAGATAAAGAAGGAGGCAAAACATGGAAAACGAAAATGCATTTGGCAGATTAGTCGATTAGACGAAAAATGGACATACCGTAGGTTTAT</canonical_amplicon>
		<polymorphic_amplicon>AAATATCTGGAATTGACTTGAAAAACAAGGGGCTTGATGAACTACGATGGATGCTCGTAATCCTCTTTTATTGGGGAATCTTGATCGCCGTCTCAAGCCAATTAACAAGAACCACGTAATTTGCATATTCCCTTTGTGTTGAATTTCTTCTGGTGCGGCAGGAGATAAARAAGGAGGCAAAACATGGAAAACGAAAATGCATTTGGCAGATTAGTCGATTAGACGAAAAATGGACATACCGTAGGTTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8001</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>39949</contig_pos>
        <strand>+</strand>
        <context>AATGGTTCTC[A/T]TATTCTCCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGGAGGACCACCGTTTCATCATCGTAAGAATGCCGTTTTAATGGTTCTC</left_flank>
        <right_flank>TATTCTCCTGCCGTGTGCGTCAATCCAGAGAGTACGTTTCCTGGGTCCCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGATTGTGCTTAATTACTGATTTGGCTGAAAATGTCTGAAAATATCTGGAATTGACTTGAAAAACAAGGGGCTTGATGAACTACGATGGATGCTCGTAATCCTCTTTTATTGGGGAATCTTGATCGCCGTCTCAAGCCAATTAACAAGAACCACGTAATTTGCATATTCCCTTTGTGTTGAATTTCTTCTGGTGCGGCAGGAGATAAAGAAGGAGGCAAAACATGGAAAACGAAAATGCATTTGGCAGATTAGTCGATTAGACGAAAAATGGACATACCGTAGGTTTATGGAGCCTTTCGTCGTCGTTGTCGTCCTACCAATCCAATCCAATCTGTTGAGTATTTCACAATGGAATTTGTGTGGAATATTTGGTTGATCTTGTTCTTTTTTGCTTCTCAAATGCGTCATTTAGCTTCCGTGCGTTTTTTTTCAATCGGGGAATACTTTCGGAGGACCACCGTTTCATCATCGTAAGAATGCCGTTTTAATGGTTCTCTTATTCTCCTGCCGTGTGCGTCAATCCAGAGAGTACGTTTCCTGGGTCCCGGGGCGCCGTGTTTCTGAGTTGATCCAAAAAGACATGAAGATGACGGGTCTTTTGAATTCAGAAATTTAATGACTCGTGAACGACAGAGCTGTGAAGAAGTGAAACGGGGCGCCGCCGCAGGGCAAAATAGCTGGGAACATATTCAGCCACAGCTTAGAACAACCTATTTGCGGAAACAATTCGGTTGTTCGAGATTTTTTTTCAAAAAACATTTTTCGCTACAAAAGTATTTCTAGTGGTTTGAACTATGATTGGGCGAGTGATTTCAGAATGACTGTGAGAGAGGCGTGGACCGATGATGATGGATCCTCAACTCTGGTGTTTCGTCTGGGAACCACGTGTGTGTGTCTTATTTTTAAACTAGGTTTACTCTTCTCTCTTCTCCTTTCCTCAAATAGTTTTAGTCCACTTTACTCATCACCCCCCCCCCCCCAGTGCTTGAATCACTCA</canonical>
            <polymorphic>CTGGATTGTGCTTAATTACTGATTTGGCTGAAAATGTCTGAAAATATCTGGAATTGACTTGAAAAACAAGGGGCTTGATGAACTACGATGGATGCTCGTAATCCTCTTTTATTGGGGAATCTTGATCGCCGTCTCAAGCCAATTAACAAGAACCACGTAATTTGCATATTCCCTTTGTGTTGAATTTCTTCTGGTGCGGCAGGAGATAAAGAAGGAGGCAAAACATGGAAAACGAAAATGCATTTGGCAGATTAGTCGATTAGACGAAAAATGGACATACCGTAGGTTTATGGAGCCTTTCGTCGTCGTTGTCGTCCTACCAATCCAATCCAATCTGTTGAGTATTTCACAATGGAATTTGTGTGGAATATTTGGTTGATCTTGTTCTTTTTTGCTTCTCAAATGCGTCATTTAGCTTCCGTGCGTTTTTTTTCAATCGGGGAATACTTTCGGAGGACCACCGTTTCATCATCGTAAGAATGCCGTTTTAATGGTTCTCWTATTCTCCTGCCGTGTGCGTCAATCCAGAGAGTACGTTTCCTGGGTCCCGGGGCGCCGTGTTTCTGAGTTGATCCAAAAAGACATGAAGATGACGGGTCTTTTGAATTCAGAAATTTAATGACTCGTGAACGACAGAGCTGTGAAGAAGTGAAACGGGGCGCCGCCGCAGGGCAAAATAGCTGGGAACATATTCAGCCACAGCTTAGAACAACCTATTTGCGGAAACAATTCGGTTGTTCGAGATTTTTTTTCAAAAAACATTTTTCGCTACAAAAGTATTTCTAGTGGTTTGAACTATGATTGGGCGAGTGATTTCAGAATGACTGTGAGAGAGGCGTGGACCGATGATGATGGATCCTCAACTCTGGTGTTTCGTCTGGGAACCACGTGTGTGTGTCTTATTTTTAAACTAGGTTTACTCTTCTCTCTTCTCCTTTCCTCAAATAGTTTTAGTCCACTTTACTCATCACCCCCCCCCCCCCAGTGCTTGAATCACTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGTATTTCACAATGGAATTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCTTTTTGGATCAACTCAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTGAGTATTTCACAATGGAATTTGTGTGGAATATTTGGTTGATCTTGTTCTTTTTTGCTTCTCAAATGCGTCATTTAGCTTCCGTGCGTTTTTTTTCAATCGGGGAATACTTTCGGAGGACCACCGTTTCATCATCGTAAGAATGCCGTTTTAATGGTTCTCTTATTCTCCTGCCGTGTGCGTCAATCCAGAGAGTACGTTTCCTGGGTCCCGGGGCGCCGTGTTTCTGAGTTGATCCAAAAAGACAT</canonical_amplicon>
		<polymorphic_amplicon>TTGAGTATTTCACAATGGAATTTGTGTGGAATATTTGGTTGATCTTGTTCTTTTTTGCTTCTCAAATGCGTCATTTAGCTTCCGTGCGTTTTTTTTCAATCGGGGAATACTTTCGGAGGACCACCGTTTCATCATCGTAAGAATGCCGTTTTAATGGTTCTCWTATTCTCCTGCCGTGTGCGTCAATCCAGAGAGTACGTTTCCTGGGTCCCGGGGCGCCGTGTTTCTGAGTTGATCCAAAAAGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8002</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>40047</contig_pos>
        <strand></strand>
        <context>AGATGACGGG[T/A]CTTTTGAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CCGGGGCGCCGTGTTTCTGAGTTGATCCAAAAAGACATGAAGATGACGGG</left_flank>
        <right_flank>CTTTTGAATTCAGAAATTTAATGACTCGTGAACGACAGAGCTGTGAAGAA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATCCTCTTTTATTGGGGAATCTTGATCGCCGTCTCAAGCCAATTAACAAGAACCACGTAATTTGCATATTCCCTTTGTGTTGAATTTCTTCTGGTGCGGCAGGAGATAAAGAAGGAGGCAAAACATGGAAAACGAAAATGCATTTGGCAGATTAGTCGATTAGACGAAAAATGGACATACCGTAGGTTTATGGAGCCTTTCGTCGTCGTTGTCGTCCTACCAATCCAATCCAATCTGTTGAGTATTTCACAATGGAATTTGTGTGGAATATTTGGTTGATCTTGTTCTTTTTTGCTTCTCAAATGCGTCATTTAGCTTCCGTGCGTTTTTTTTCAATCGGGGAATACTTTCGGAGGACCACCGTTTCATCATCGTAAGAATGCCGTTTTAATGGTTCTCTTATTCTCCTGCCGTGTGCGTCAATCCAGAGAGTACGTTTCCTGGGTCCCGGGGCGCCGTGTTTCTGAGTTGATCCAAAAAGACATGAAGATGACGGGTCTTTTGAATTCAGAAATTTAATGACTCGTGAACGACAGAGCTGTGAAGAAGTGAAACGGGGCGCCGCCGCAGGGCAAAATAGCTGGGAACATATTCAGCCACAGCTTAGAACAACCTATTTGCGGAAACAATTCGGTTGTTCGAGATTTTTTTTCAAAAAACATTTTTCGCTACAAAAGTATTTCTAGTGGTTTGAACTATGATTGGGCGAGTGATTTCAGAATGACTGTGAGAGAGGCGTGGACCGATGATGATGGATCCTCAACTCTGGTGTTTCGTCTGGGAACCACGTGTGTGTGTCTTATTTTTAAACTAGGTTTACTCTTCTCTCTTCTCCTTTCCTCAAATAGTTTTAGTCCACTTTACTCATCACCCCCCCCCCCCCAGTGCTTGAATCACTCAGTGCGGAGCATTTTTTCCTTCTCTCCTTCGGACCAGGCATACACTTGCACAATCTGTCCTTCTCCGCACCCGCACCGCCCGGTTGCGCCCATCCTTTT</canonical>
            <polymorphic>TAATCCTCTTTTATTGGGGAATCTTGATCGCCGTCTCAAGCCAATTAACAAGAACCACGTAATTTGCATATTCCCTTTGTGTTGAATTTCTTCTGGTGCGGCAGGAGATAAAGAAGGAGGCAAAACATGGAAAACGAAAATGCATTTGGCAGATTAGTCGATTAGACGAAAAATGGACATACCGTAGGTTTATGGAGCCTTTCGTCGTCGTTGTCGTCCTACCAATCCAATCCAATCTGTTGAGTATTTCACAATGGAATTTGTGTGGAATATTTGGTTGATCTTGTTCTTTTTTGCTTCTCAAATGCGTCATTTAGCTTCCGTGCGTTTTTTTTCAATCGGGGAATACTTTCGGAGGACCACCGTTTCATCATCGTAAGAATGCCGTTTTAATGGTTCTCTTATTCTCCTGCCGTGTGCGTCAATCCAGAGAGTACGTTTCCTGGGTCCCGGGGCGCCGTGTTTCTGAGTTGATCCAAAAAGACATGAAGATGACGGGWCTTTTGAATTCAGAAATTTAATGACTCGTGAACGACAGAGCTGTGAAGAAGTGAAACGGGGCGCCGCCGCAGGGCAAAATAGCTGGGAACATATTCAGCCACAGCTTAGAACAACCTATTTGCGGAAACAATTCGGTTGTTCGAGATTTTTTTTCAAAAAACATTTTTCGCTACAAAAGTATTTCTAGTGGTTTGAACTATGATTGGGCGAGTGATTTCAGAATGACTGTGAGAGAGGCGTGGACCGATGATGATGGATCCTCAACTCTGGTGTTTCGTCTGGGAACCACGTGTGTGTGTCTTATTTTTAAACTAGGTTTACTCTTCTCTCTTCTCCTTTCCTCAAATAGTTTTAGTCCACTTTACTCATCACCCCCCCCCCCCCAGTGCTTGAATCACTCAGTGCGGAGCATTTTTTCCTTCTCTCCTTCGGACCAGGCATACACTTGCACAATCTGTCCTTCTCCGCACCCGCACCGCCCGGTTGCGCCCATCCTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTAAGAATGCCGTTTTAAT</pcr_primer_p1>
		<pcr_primer_p2>CAAATAGGTTGTTCTAAGCTGTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGTAAGAATGCCGTTTTAATGGTTCTCTTATTCTCCTGCCGTGTGCGTCAATCCAGAGAGTACGTTTCCTGGGTCCCGGGGCGCCGTGTTTCTGAGTTGATCCAAAAAGACATGAAGATGACGGGTCTTTTGAATTCAGAAATTTAATGACTCGTGAACGACAGAGCTGTGAAGAAGTGAAACGGGGCGCCGCCGCAGGGCAAAATAGCTGGGAACATATTCAGCCACAGCTTAGAACAACCTATTTG</canonical_amplicon>
		<polymorphic_amplicon>CGTAAGAATGCCGTTTTAATGGTTCTCTTATTCTCCTGCCGTGTGCGTCAATCCAGAGAGTACGTTTCCTGGGTCCCGGGGCGCCGTGTTTCTGAGTTGATCCAAAAAGACATGAAGATGACGGGWCTTTTGAATTCAGAAATTTAATGACTCGTGAACGACAGAGCTGTGAAGAAGTGAAACGGGGCGCCGCCGCAGGGCAAAATAGCTGGGAACATATTCAGCCACAGCTTAGAACAACCTATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8003</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>41441</contig_pos>
        <strand>+</strand>
        <context>CTTTCTATTT[C/T]TCCTAAAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCCTTTTTTCTTGGACCTTCTATCTTTCAAATTCAGCTCCTTTCTATTT</left_flank>
        <right_flank>TCCTAAAATATTCCTCTCTTTCCTTTTTTCTTGTTAAATAATATTTCCAG</right_flank>
        <qual_score>146</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTCTACTACGCCATCTGAGTCTTCGCGCATCGAATCACAAAAAGTCCAACATTCTATTTTTCCCCTTTTTCAGCACCCCCCCCCCTCCCATCTCGTTCCTCTTCTTTTTTCTCTCCAGCGAATTACAAACGACTTCTTGGAACCATCGTTCATTCTTTTATCTCTTCAGAAATGTTTTTGGAGTTATTCTCGCTAACAAAGAAGAACATCTCTCTCCTTCCCGAGCCTTCATCCCCGGAACTTTTTGAATAATTATGCATTCTTTTTTCAGCTTACACGTCTCGGACGCACCTCGGATTAAAAGACGCCCTGCTGCAGATGCTGTTGCTCTTCCGAACCATACTGGTCTTTTCTTCTTCTTCCCGATTTTTTTTGCAACGCCTCTCCCCAGAAAATAGGGGCGGAGTCATCATCATCGGCTCTCAAACCCCCGCCCCTCTTTTTTGTTCCCTTTTTTCTTGGACCTTCTATCTTTCAAATTCAGCTCCTTTCTATTTCTCCTAAAATATTCCTCTCTTTCCTTTTTTCTTGTTAAATAATATTTCCAGTTTTCTCCTCTTCCTGTTCCCGGAATTTTTCTGAAAGCCCTAATTTATACGGTAGCCTTGTAATTTATTGTGATTATTTATTGTAAGTGTGTATGTGTGGTTGTTGTATGGTGCACAGAAAGAAAAGAAAATATATAGAAAAGAATGTTTCTGGGGTGAATCAGAGAAAAGATAGATGTGAAGAGATGAGTGGATGGATTCACCGGAAATTAGAGCCAGAACTTTTGCTCTTTGAGCAAAATGAAAGAAAAAAACAAAAAGAAAAGATAGATGAGATGGATGCAGATGTGTGGATTGGTATGTAAGTTCATTTGGAAGATTGGATTTCAGAGTAGTTTCAGAGCTTTTTGGGAATTTGGAAGTTTCGATTCTTTGATCTATTTTTTCTTCGTTCCCCCCACCAGATCCATTTCAAAATCTGGATTAAGATTCAGTGACCCGAAACGATTA</canonical>
            <polymorphic>GCTTCTACTACGCCATCTGAGTCTTCGCGCATCGAATCACAAAAAGTCCAACATTCTATTTTTCCCCTTTTTCAGCACCCCCCCCCCTCCCATCTCGTTCCTCTTCTTTTTTCTCTCCAGCGAATTACAAACGACTTCTTGGAACCATCGTTCATTCTTTTATCTCTTCAGAAATGTTTTTGGAGTTATTCTCGCTAACAAAGAAGAACATCTCTCTCCTTCCCGAGCCTTCATCCCCGGAACTTTTTGAATAATTATGCATTCTTTTTTCAGCTTACACGTCTCGGACGCACCTCGGATTAAAAGACGCCCTGCTGCAGATGCTGTTGCTCTTCCGAACCATACTGGTCTTTTCTTCTTCTTCCCGATTTTTTTTGCAACGCCTCTCCCCAGAAAATAGGGGCGGAGTCATCATCATCGGCTCTCAAACCCCCGCCCCTCTTTTTTGTTCCCTTTTTTCTTGGACCTTCTATCTTTCAAATTCAGCTCCTTTCTATTTYTCCTAAAATATTCCTCTCTTTCCTTTTTTCTTGTTAAATAATATTTCCAGTTTTCTCCTCTTCCTGTTCCCGGAATTTTTCTGAAAGCCCTAATTTATACGGTAGCCTTGTAATTTATTGTGATTATTTATTGTAAGTGTGTATGTGTGGTTGTTGTATGGTGCACAGAAAGAAAAGAAAATATATAGAAAAGAATGTTTCTGGGGTGAATCAGAGAAAAGATAGATGTGAAGAGATGAGTGGATGGATTCACCGGAAATTAGAGCCAGAACTTTTGCTCTTTGAGCAAAATGAAAGAAAAAAACAAAAAGAAAAGATAGATGAGATGGATGCAGATGTGTGGATTGGTATGTAAGTTCATTTGGAAGATTGGATTTCAGAGTAGTTTCAGAGCTTTTTGGGAATTTGGAAGTTTCGATTCTTTGATCTATTTTTTCTTCGTTCCCCCCACCAGATCCATTTCAAAATCTGGATTAAGATTCAGTGACCCGAAACGATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTCTTCTTCCCGATTT</pcr_primer_p1>
		<pcr_primer_p2>ATAAATTAGGGCTTTCAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTCTTCTTCCCGATTTTTTTTGCAACGCCTCTCCCCAGAAAATAGGGGCGGAGTCATCATCATCGGCTCTCAAACCCCCGCCCCTCTTTTTTGTTCCCTTTTTTCTTGGACCTTCTATCTTTCAAATTCAGCTCCTTTCTATTTCTCCTAAAATATTCCTCTCTTTCCTTTTTTCTTGTTAAATAATATTTCCAGTTTTCTCCTCTTCCTGTTCCCGGAATTTTTCTGAAAGCCCTAATTTAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTCTTCTTCCCGATTTTTTTTGCAACGCCTCTCCCCAGAAAATAGGGGCGGAGTCATCATCATCGGCTCTCAAACCCCCGCCCCTCTTTTTTGTTCCCTTTTTTCTTGGACCTTCTATCTTTCAAATTCAGCTCCTTTCTATTTYTCCTAAAATATTCCTCTCTTTCCTTTTTTCTTGTTAAATAATATTTCCAGTTTTCTCCTCTTCCTGTTCCCGGAATTTTTCTGAAAGCCCTAATTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8004</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>41407</contig_pos>
        <strand>+</strand>
        <context>TTTTCTTGGA[A/C]CTTCTATCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATCGGCTCTCAAACCCCCGCCCCTCTTTTTTGTTCCCTTTTTTCTTGGA</left_flank>
        <right_flank>CTTCTATCTTTCAAATTCAGCTCCTTTCTATTTCTCCTAAAATATTCCTC</right_flank>
        <qual_score>149</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTCAAGGAATAATGACCTTTTTGAAATCTGAAGCTTCTACTACGCCATCTGAGTCTTCGCGCATCGAATCACAAAAAGTCCAACATTCTATTTTTCCCCTTTTTCAGCACCCCCCCCCCTCCCATCTCGTTCCTCTTCTTTTTTCTCTCCAGCGAATTACAAACGACTTCTTGGAACCATCGTTCATTCTTTTATCTCTTCAGAAATGTTTTTGGAGTTATTCTCGCTAACAAAGAAGAACATCTCTCTCCTTCCCGAGCCTTCATCCCCGGAACTTTTTGAATAATTATGCATTCTTTTTTCAGCTTACACGTCTCGGACGCACCTCGGATTAAAAGACGCCCTGCTGCAGATGCTGTTGCTCTTCCGAACCATACTGGTCTTTTCTTCTTCTTCCCGATTTTTTTTGCAACGCCTCTCCCCAGAAAATAGGGGCGGAGTCATCATCATCGGCTCTCAAACCCCCGCCCCTCTTTTTTGTTCCCTTTTTTCTTGGACCTTCTATCTTTCAAATTCAGCTCCTTTCTATTTCTCCTAAAATATTCCTCTCTTTCCTTTTTTCTTGTTAAATAATATTTCCAGTTTTCTCCTCTTCCTGTTCCCGGAATTTTTCTGAAAGCCCTAATTTATACGGTAGCCTTGTAATTTATTGTGATTATTTATTGTAAGTGTGTATGTGTGGTTGTTGTATGGTGCACAGAAAGAAAAGAAAATATATAGAAAAGAATGTTTCTGGGGTGAATCAGAGAAAAGATAGATGTGAAGAGATGAGTGGATGGATTCACCGGAAATTAGAGCCAGAACTTTTGCTCTTTGAGCAAAATGAAAGAAAAAAACAAAAAGAAAAGATAGATGAGATGGATGCAGATGTGTGGATTGGTATGTAAGTTCATTTGGAAGATTGGATTTCAGAGTAGTTTCAGAGCTTTTTGGGAATTTGGAAGTTTCGATTCTTTGATCTATTTTTTCTTCGTTCCCCCCACCAGATCCATTTCAAA</canonical>
            <polymorphic>TGGTCAAGGAATAATGACCTTTTTGAAATCTGAAGCTTCTACTACGCCATCTGAGTCTTCGCGCATCGAATCACAAAAAGTCCAACATTCTATTTTTCCCCTTTTTCAGCACCCCCCCCCCTCCCATCTCGTTCCTCTTCTTTTTTCTCTCCAGCGAATTACAAACGACTTCTTGGAACCATCGTTCATTCTTTTATCTCTTCAGAAATGTTTTTGGAGTTATTCTCGCTAACAAAGAAGAACATCTCTCTCCTTCCCGAGCCTTCATCCCCGGAACTTTTTGAATAATTATGCATTCTTTTTTCAGCTTACACGTCTCGGACGCACCTCGGATTAAAAGACGCCCTGCTGCAGATGCTGTTGCTCTTCCGAACCATACTGGTCTTTTCTTCTTCTTCCCGATTTTTTTTGCAACGCCTCTCCCCAGAAAATAGGGGCGGAGTCATCATCATCGGCTCTCAAACCCCCGCCCCTCTTTTTTGTTCCCTTTTTTCTTGGAMCTTCTATCTTTCAAATTCAGCTCCTTTCTATTTCTCCTAAAATATTCCTCTCTTTCCTTTTTTCTTGTTAAATAATATTTCCAGTTTTCTCCTCTTCCTGTTCCCGGAATTTTTCTGAAAGCCCTAATTTATACGGTAGCCTTGTAATTTATTGTGATTATTTATTGTAAGTGTGTATGTGTGGTTGTTGTATGGTGCACAGAAAGAAAAGAAAATATATAGAAAAGAATGTTTCTGGGGTGAATCAGAGAAAAGATAGATGTGAAGAGATGAGTGGATGGATTCACCGGAAATTAGAGCCAGAACTTTTGCTCTTTGAGCAAAATGAAAGAAAAAAACAAAAAGAAAAGATAGATGAGATGGATGCAGATGTGTGGATTGGTATGTAAGTTCATTTGGAAGATTGGATTTCAGAGTAGTTTCAGAGCTTTTTGGGAATTTGGAAGTTTCGATTCTTTGATCTATTTTTTCTTCGTTCCCCCCACCAGATCCATTTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTCTTCTTCCCGATTT</pcr_primer_p1>
		<pcr_primer_p2>ATAAATTAGGGCTTTCAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTCTTCTTCCCGATTTTTTTTGCAACGCCTCTCCCCAGAAAATAGGGGCGGAGTCATCATCATCGGCTCTCAAACCCCCGCCCCTCTTTTTTGTTCCCTTTTTTCTTGGACCTTCTATCTTTCAAATTCAGCTCCTTTCTATTTCTCCTAAAATATTCCTCTCTTTCCTTTTTTCTTGTTAAATAATATTTCCAGTTTTCTCCTCTTCCTGTTCCCGGAATTTTTCTGAAAGCCCTAATTTAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTCTTCTTCCCGATTTTTTTTGCAACGCCTCTCCCCAGAAAATAGGGGCGGAGTCATCATCATCGGCTCTCAAACCCCCGCCCCTCTTTTTTGTTCCCTTTTTTCTTGGAMCTTCTATCTTTCAAATTCAGCTCCTTTCTATTTCTCCTAAAATATTCCTCTCTTTCCTTTTTTCTTGTTAAATAATATTTCCAGTTTTCTCCTCTTCCTGTTCCCGGAATTTTTCTGAAAGCCCTAATTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8034</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>96661</contig_pos>
        <strand>+</strand>
        <context>ATCACAATGK[C/T]TAACCTAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACAGTATTGTTTAAAATACCTTCTCCCTCAATTTGAAACATCACAATGT</left_flank>
        <right_flank>TAACCTAATTCAACTTTCTGACCTAATTTACCTACTTTCTTTGTTTTTTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAATGAATGCCCAACAGGTTAGCGCAAAATTACCCGGACTCAAGTTTACTGGCATGAAGTTTGACCGAAGCGTTGTATTGAGCTCAAATTTGGTGTACAAAAATTTAACTAATGCATCTGTAAACTGGCAAAATTTCAAATAATTTGATCACCTCTGAGCTGAGTTATCGATTGTCAAAGTTTATTCATCTCATGAAAATCCCTCATGAACGCCGTCCATCTTTGGGCAATCATAACAATACTTGAGGAATTGCTGTGAAAATTTCCGTAGCTTTGCATAAAACGTAAAATTATATCTCCACCAATTTACTTGCTTCCAAGATACTTATGTCCAAAGATCTACCCGTTTTTATCAGTACGGGTAATTGTGCGCCACCTTATAGTAATTGTCCGAGATCGATCAAAAACATCCTCAACCAAAACTTCAATCCTTTAAAAATCCCTAGAGTACAGTATTGTTTAAAATACCTTCTCCCTCAATTTGAAACATCACAATGTCTAACCTAATTCAACTTTCTGACCTAATTTACCTACTTTCTTTGTTTTTTCGAAAAGTTTCTTTGACCTCTTTTCTTTGACCATTTCAATCAAACAAATGTCCCTTTTCTTCTCAACCTCATTAAGAAGGAGAATTCCATCAAGTTGTCCAATGCTCTCCCAAATTTCCTCTTATTCTTAGATCTCTTATTCCTCTGACTTTTCATAAATGCACCGGAAGTTCGGTCGAAAAGACAAATAGATTGAGCCAATTTAGGTGGAAAGGGTATGTAGGTTTGTCTTGTATAACTCACATCCGTTTTCAGTATCGCATACTCCATCGGTACATGTCACAGTTTCGGACTCTTTTGTGCATTTACAGCGGACAGCTGCCACGTGGGATACGGTAGTGAGTAGAAGGATAGCGGAAAGGGCCAGGAGACAATCGGATGGGTGCATGATGGGTGGAAGAATCTGTAGAAAACGAAGACGTTGGGATTGGAATATGGTGAAGAAAAAGTG</canonical>
            <polymorphic>CCAATGAATGCCCAACAGGTTAGCGCAAAATTACCCGGACTCAAGTTTACTGGCATGAAGTTTGACCGAAGCGTTGTATTGAGCTCAAATTTGGTGTACAAAAATTTAACTAATGCATCTGTAAACTGGCAAAATTTCAAATAATTTGATCACCTCTGAGCTGAGTTATCGATTGTCAAAGTTTATTCATCTCATGAAAATCCCTCATGAACGCCGTCCATCTTTGGGCAATCATAACAATACTTGAGGAATTGCTGTGAAAATTTCCGTAGCTTTGCATAAAACGTAAAATTATATCTCCACCAATTTACTTGCTTCCAAGATACTTATGTCCAAAGATCTACCCGTTTTTATCAGTACGGGTAATTGTGCGCCACCTTATAGTAATTGTCCGAGATCGATCAAAAACATCCTCAACCAAAACTTCAATCCTTTAAAAATCCCTAGAGTACAGTATTGTTTAAAATACCTTCTCCCTCAATTTGAAACATCACAATGTYTAACCTAATTCAACTTTCTGACCTAATTTACCTACTTTCTTTGTTTTTTCGAAAAGTTTCTTTGACCTCTTTTCTTTGACCATTTCAATCAAACAAATGTCCCTTTTCTTCTCAACCTCATTAAGAAGGAGAATTCCATCAAGTTGTCCAATGCTCTCCCAAATTTCCTCTTATTCTTAGATCTCTTATTCCTCTGACTTTTCATAAATGCACCGGAAGTTCGGTCGAAAAGACAAATAGATTGAGCCAATTTAGGTGGAAAGGGTATGTAGGTTTGTCTTGTATAACTCACATCCGTTTTCAGTATCGCATACTCCATCGGTACATGTCACAGTTTCGGACTCTTTTGTGCATTTACAGCGGACAGCTGCCACGTGGGATACGGTAGTGAGTAGAAGGATAGCGGAAAGGGCCAGGAGACAATCGGATGGGTGCATGATGGGTGGAAGAATCTGTAGAAAACGAAGACGTTGGGATTGGAATATGGTGAAGAAAAAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAATCCTTTAAAAATCCCTAGA</pcr_primer_p1>
		<pcr_primer_p2>AATAAGAGGAAATTTGGGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAATCCTTTAAAAATCCCTAGAGTACAGTATTGTTTAAAATACCTTCTCCCTCAATTTGAAACATCACAATGTCTAACCTAATTCAACTTTCTGACCTAATTTACCTACTTTCTTTGTTTTTTCGAAAAGTTTCTTTGACCTCTTTTCTTTGACCATTTCAATCAAACAAATGTCCCTTTTCTTCTCAACCTCATTAAGAAGGAGAATTCCATCAAGTTGTCCAATGCTCTCCCAAATTTCCTCTTATT</canonical_amplicon>
		<polymorphic_amplicon>TCAATCCTTTAAAAATCCCTAGAGTACAGTATTGTTTAAAATACCTTCTCCCTCAATTTGAAACATCACAATGTYTAACCTAATTCAACTTTCTGACCTAATTTACCTACTTTCTTTGTTTTTTCGAAAAGTTTCTTTGACCTCTTTTCTTTGACCATTTCAATCAAACAAATGTCCCTTTTCTTCTCAACCTCATTAAGAAGGAGAATTCCATCAAGTTGTCCAATGCTCTCCCAAATTTCCTCTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8035</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>96660</contig_pos>
        <strand>+</strand>
        <context>CATCACAATG[G/T]YTAACCTAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTACAGTATTGTTTAAAATACCTTCTCCCTCAATTTGAAACATCACAATG</left_flank>
        <right_flank>CTAACCTAATTCAACTTTCTGACCTAATTTACCTACTTTCTTTGTTTTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAATGAATGCCCAACAGGTTAGCGCAAAATTACCCGGACTCAAGTTTACTGGCATGAAGTTTGACCGAAGCGTTGTATTGAGCTCAAATTTGGTGTACAAAAATTTAACTAATGCATCTGTAAACTGGCAAAATTTCAAATAATTTGATCACCTCTGAGCTGAGTTATCGATTGTCAAAGTTTATTCATCTCATGAAAATCCCTCATGAACGCCGTCCATCTTTGGGCAATCATAACAATACTTGAGGAATTGCTGTGAAAATTTCCGTAGCTTTGCATAAAACGTAAAATTATATCTCCACCAATTTACTTGCTTCCAAGATACTTATGTCCAAAGATCTACCCGTTTTTATCAGTACGGGTAATTGTGCGCCACCTTATAGTAATTGTCCGAGATCGATCAAAAACATCCTCAACCAAAACTTCAATCCTTTAAAAATCCCTAGAGTACAGTATTGTTTAAAATACCTTCTCCCTCAATTTGAAACATCACAATGTCTAACCTAATTCAACTTTCTGACCTAATTTACCTACTTTCTTTGTTTTTTCGAAAAGTTTCTTTGACCTCTTTTCTTTGACCATTTCAATCAAACAAATGTCCCTTTTCTTCTCAACCTCATTAAGAAGGAGAATTCCATCAAGTTGTCCAATGCTCTCCCAAATTTCCTCTTATTCTTAGATCTCTTATTCCTCTGACTTTTCATAAATGCACCGGAAGTTCGGTCGAAAAGACAAATAGATTGAGCCAATTTAGGTGGAAAGGGTATGTAGGTTTGTCTTGTATAACTCACATCCGTTTTCAGTATCGCATACTCCATCGGTACATGTCACAGTTTCGGACTCTTTTGTGCATTTACAGCGGACAGCTGCCACGTGGGATACGGTAGTGAGTAGAAGGATAGCGGAAAGGGCCAGGAGACAATCGGATGGGTGCATGATGGGTGGAAGAATCTGTAGAAAACGAAGACGTTGGGATTGGAATATGGTGAAGAAAAAGT</canonical>
            <polymorphic>TCCAATGAATGCCCAACAGGTTAGCGCAAAATTACCCGGACTCAAGTTTACTGGCATGAAGTTTGACCGAAGCGTTGTATTGAGCTCAAATTTGGTGTACAAAAATTTAACTAATGCATCTGTAAACTGGCAAAATTTCAAATAATTTGATCACCTCTGAGCTGAGTTATCGATTGTCAAAGTTTATTCATCTCATGAAAATCCCTCATGAACGCCGTCCATCTTTGGGCAATCATAACAATACTTGAGGAATTGCTGTGAAAATTTCCGTAGCTTTGCATAAAACGTAAAATTATATCTCCACCAATTTACTTGCTTCCAAGATACTTATGTCCAAAGATCTACCCGTTTTTATCAGTACGGGTAATTGTGCGCCACCTTATAGTAATTGTCCGAGATCGATCAAAAACATCCTCAACCAAAACTTCAATCCTTTAAAAATCCCTAGAGTACAGTATTGTTTAAAATACCTTCTCCCTCAATTTGAAACATCACAATGKCTAACCTAATTCAACTTTCTGACCTAATTTACCTACTTTCTTTGTTTTTTCGAAAAGTTTCTTTGACCTCTTTTCTTTGACCATTTCAATCAAACAAATGTCCCTTTTCTTCTCAACCTCATTAAGAAGGAGAATTCCATCAAGTTGTCCAATGCTCTCCCAAATTTCCTCTTATTCTTAGATCTCTTATTCCTCTGACTTTTCATAAATGCACCGGAAGTTCGGTCGAAAAGACAAATAGATTGAGCCAATTTAGGTGGAAAGGGTATGTAGGTTTGTCTTGTATAACTCACATCCGTTTTCAGTATCGCATACTCCATCGGTACATGTCACAGTTTCGGACTCTTTTGTGCATTTACAGCGGACAGCTGCCACGTGGGATACGGTAGTGAGTAGAAGGATAGCGGAAAGGGCCAGGAGACAATCGGATGGGTGCATGATGGGTGGAAGAATCTGTAGAAAACGAAGACGTTGGGATTGGAATATGGTGAAGAAAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAATCCTTTAAAAATCCCTAGA</pcr_primer_p1>
		<pcr_primer_p2>AATAAGAGGAAATTTGGGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAATCCTTTAAAAATCCCTAGAGTACAGTATTGTTTAAAATACCTTCTCCCTCAATTTGAAACATCACAATGTCTAACCTAATTCAACTTTCTGACCTAATTTACCTACTTTCTTTGTTTTTTCGAAAAGTTTCTTTGACCTCTTTTCTTTGACCATTTCAATCAAACAAATGTCCCTTTTCTTCTCAACCTCATTAAGAAGGAGAATTCCATCAAGTTGTCCAATGCTCTCCCAAATTTCCTCTTATT</canonical_amplicon>
		<polymorphic_amplicon>TCAATCCTTTAAAAATCCCTAGAGTACAGTATTGTTTAAAATACCTTCTCCCTCAATTTGAAACATCACAATGKCTAACCTAATTCAACTTTCTGACCTAATTTACCTACTTTCTTTGTTTTTTCGAAAAGTTTCTTTGACCTCTTTTCTTTGACCATTTCAATCAAACAAATGTCCCTTTTCTTCTCAACCTCATTAAGAAGGAGAATTCCATCAAGTTGTCCAATGCTCTCCCAAATTTCCTCTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8037</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>191478</contig_pos>
        <strand>+</strand>
        <context>CTTTGCAGGA[A/G]GTAGAGCATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCCAATCAGTGAAATGCAAGCCAGAGTTTATTTAGAGACCTTTGCAGGA</left_flank>
        <right_flank>GTAGAGCATTGCCAAGTAGAGATGAGGTATTGTTAAAAAAACATACATGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTCGTCAACTGGAACATGGAGAGACTTCTCAATTGAGATTTGATCACGAAAGATATGGACTCAAGCCAAAACATCATCCTATGAAGTTTGTTTCATTTGAGAAAATTAAAATTTTTTCATCAGAAAACCTTTCTTCTAGCGCCCATATAACAATCAATGACGAGTTGCCAAACCGAATTGCTTGTGGAACAGTTCGAGTGAAACCAGGAATCAAATCATTCGGAGAAGGAAATTCAATTGAATTCGAAGATGGATCTGTCGTGGAAGGAGTTGATGAAGTACTTCTCGCCACTGGATTCTCATTCCATTTTAATTTGATCGAAGGGGGACAACTGGTGACTGTGAATGAGAATAAGACAGATGCCTACAAATACATGTTCCCATTGGCTACTTCTGATCATAACAGTTTGGCTGTAATTGGACTCATTCAGCCAATCGGATCGATTATGCCAATCAGTGAAATGCAAGCCAGAGTTTATTTAGAGACCTTTGCAGGAGGTAGAGCATTGCCAAGTAGAGATGAGGTATTGTTAAAAAAACATACATGAAAATCAAAATTTTGAAAATTAAAAAAATTAAGAATATACATTTTGAAAGTGAAAAATTTAACATTTGGAAAATATTAAAAAATTCAAATTCAAATTTTAGAGTTTTAAGAAGGTTTTAGGATTTTTCGAATTAGGAAATTTATTGAAAAAATTCAGAACTTCGGAATTTTTGAATTTTCTAGTTTCAAATATTTTGTAATCTCAGAATTTCATATTTTCAGAACGAAAACTACCGTAACCAAAAAATGTATTTCTTTTCCGGATTGATTTTCTCGATTTTCTCGCGTTTTCTGGCAATTTCTTCGTTATTTACTAAAAATTGTACTCTCCGACTTTTTTTGGGAAAAAAAATGACAGAAAACTCTACAGCAAGCAGTGAAAAACGAGAAAATAAATTCGGAACATAAAAATATTGTTGATTACTGTAGATGTCGTTGGACCTTCGAACAC</canonical>
            <polymorphic>AACTCGTCAACTGGAACATGGAGAGACTTCTCAATTGAGATTTGATCACGAAAGATATGGACTCAAGCCAAAACATCATCCTATGAAGTTTGTTTCATTTGAGAAAATTAAAATTTTTTCATCAGAAAACCTTTCTTCTAGCGCCCATATAACAATCAATGACGAGTTGCCAAACCGAATTGCTTGTGGAACAGTTCGAGTGAAACCAGGAATCAAATCATTCGGAGAAGGAAATTCAATTGAATTCGAAGATGGATCTGTCGTGGAAGGAGTTGATGAAGTACTTCTCGCCACTGGATTCTCATTCCATTTTAATTTGATCGAAGGGGGACAACTGGTGACTGTGAATGAGAATAAGACAGATGCCTACAAATACATGTTCCCATTGGCTACTTCTGATCATAACAGTTTGGCTGTAATTGGACTCATTCAGCCAATCGGATCGATTATGCCAATCAGTGAAATGCAAGCCAGAGTTTATTTAGAGACCTTTGCAGGARGTAGAGCATTGCCAAGTAGAGATGAGGTATTGTTAAAAAAACATACATGAAAATCAAAATTTTGAAAATTAAAAAAATTAAGAATATACATTTTGAAAGTGAAAAATTTAACATTTGGAAAATATTAAAAAATTCAAATTCAAATTTTAGAGTTTTAAGAAGGTTTTAGGATTTTTCGAATTAGGAAATTTATTGAAAAAATTCAGAACTTCGGAATTTTTGAATTTTCTAGTTTCAAATATTTTGTAATCTCAGAATTTCATATTTTCAGAACGAAAACTACCGTAACCAAAAAATGTATTTCTTTTCCGGATTGATTTTCTCGATTTTCTCGCGTTTTCTGGCAATTTCTTCGTTATTTACTAAAAATTGTACTCTCCGACTTTTTTTGGGAAAAAAAATGACAGAAAACTCTACAGCAAGCAGTGAAAAACGAGAAAATAAATTCGGAACATAAAAATATTGTTGATTACTGTAGATGTCGTTGGACCTTCGAACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTATGCCAATCAGTGAAATG</pcr_primer_p1>
		<pcr_primer_p2>CCTAATTCGAAAAATCCTAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>ATTATGCCAATCAGTGAAATGCAAGCCAGAGTTTATTTAGAGACCTTTGCAGGAGGTAGAGCATTGCCAAGTAGAGATGAGGTATTGTTAAAAAAACATACATGAAAATCAAAATTTTGAAAATTAAAAAAATTAAGAATATACATTTTGAAAGTGAAAAATTTAACATTTGGAAAATATTAAAAAATTCAAATTCAAATTTTAGAGTTTTAAGAAGGTTTTAGGATTTTTCGAATTAGG</canonical_amplicon>
		<polymorphic_amplicon>ATTATGCCAATCAGTGAAATGCAAGCCAGAGTTTATTTAGAGACCTTTGCAGGARGTAGAGCATTGCCAAGTAGAGATGAGGTATTGTTAAAAAAACATACATGAAAATCAAAATTTTGAAAATTAAAAAAATTAAGAATATACATTTTGAAAGTGAAAAATTTAACATTTGGAAAATATTAAAAAATTCAAATTCAAATTTTAGAGTTTTAAGAAGGTTTTAGGATTTTTCGAATTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8038</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>215474</contig_pos>
        <strand>+</strand>
        <context>GAAGGGAAAT[C/T]GACTGAAACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCAATAGAAAAGTTATTTAAGCACGAATTAGTATGAGAGAAGGGAAAT</left_flank>
        <right_flank>GACTGAAACAGGAAGAAACCAGGGGCAAAAAAGAATAGAGAAAGGGTTCT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACTCAGAAAAAATATTAAAATTCGGCAGGATTTTGTAAATACTGTTGACGAATTCCATAAATTGCTGAAAAGGGAATTGGTTTTAGTCTTTTGTTAATTGTGGGCTTTCTTCCTCTCCAAGAAAGAATTCTATCTCGCGCATTCCGCCTCATTCATCTGCTATCTGCGCCTCTCTGATTCGCCGTTCTCTGAACTACCGGAATCAGGGCGAACAAAGTCTGCGCACCCACACACACACACTCTTTGTCACTATTATTCTGGATAATGTCGTCGTTTTGTTCAGAATAGTGGCGAAAACACAATTACAGACTATCGAGAATCGGTCTACCAGCAAACAAGCCAAATGCCACGGTCAGTCATAGTACAACCTCCAGAAGTTGTTGGACTACGTCATCAGGAGGAAACCAAACAAACTGGTTTTTTATGCTTTCTTATCTCGATACATTTCATTCAATAGAAAAGTTATTTAAGCACGAATTAGTATGAGAGAAGGGAAATTGACTGAAACAGGAAGAAACCAGGGGCAAAAAAGAATAGAGAAAGGGTTCTTCACTAACATTTGAAACATAGTCAGGATATGCTGATAACCGATCAATCAGCTCACAACTAAACAGAAATGACGAGAATAAGTTACTATGTTTATCACAACTTTGGGAGGAAGGTGCCTATAGAAGATGAATAGAAGGAAAGGAAAAATCACAGGTCACATTATGCAATTCAGGGAAGAAGACTAGTTATGGGGAGAGAAATTGACTAGAGTCCTAGCAGGTCATCCAGACCGGATGAGGAGTTGACGGTGACAGGAACCGGAGGAGGTGCAGAAGCAAACATGTCGAACAGGTCATTGTTGGCAGCTGTTGTTGTTGTGGCAAATGATGAAGACGTGGACATTGGAATAGACTGGTTACCGGTTGTCGATGGTGCTGGAGCAGAGTGAAGCGCACTTTGTCCGTAGTTTGTCTTCATGACCTGGAAGCGGTAAATATATGCTATCTGCTA</canonical>
            <polymorphic>CACTCAGAAAAAATATTAAAATTCGGCAGGATTTTGTAAATACTGTTGACGAATTCCATAAATTGCTGAAAAGGGAATTGGTTTTAGTCTTTTGTTAATTGTGGGCTTTCTTCCTCTCCAAGAAAGAATTCTATCTCGCGCATTCCGCCTCATTCATCTGCTATCTGCGCCTCTCTGATTCGCCGTTCTCTGAACTACCGGAATCAGGGCGAACAAAGTCTGCGCACCCACACACACACACTCTTTGTCACTATTATTCTGGATAATGTCGTCGTTTTGTTCAGAATAGTGGCGAAAACACAATTACAGACTATCGAGAATCGGTCTACCAGCAAACAAGCCAAATGCCACGGTCAGTCATAGTACAACCTCCAGAAGTTGTTGGACTACGTCATCAGGAGGAAACCAAACAAACTGGTTTTTTATGCTTTCTTATCTCGATACATTTCATTCAATAGAAAAGTTATTTAAGCACGAATTAGTATGAGAGAAGGGAAATYGACTGAAACAGGAAGAAACCAGGGGCAAAAAAGAATAGAGAAAGGGTTCTTCACTAACATTTGAAACATAGTCAGGATATGCTGATAACCGATCAATCAGCTCACAACTAAACAGAAATGACGAGAATAAGTTACTATGTTTATCACAACTTTGGGAGGAAGGTGCCTATAGAAGATGAATAGAAGGAAAGGAAAAATCACAGGTCACATTATGCAATTCAGGGAAGAAGACTAGTTATGGGGAGAGAAATTGACTAGAGTCCTAGCAGGTCATCCAGACCGGATGAGGAGTTGACGGTGACAGGAACCGGAGGAGGTGCAGAAGCAAACATGTCGAACAGGTCATTGTTGGCAGCTGTTGTTGTTGTGGCAAATGATGAAGACGTGGACATTGGAATAGACTGGTTACCGGTTGTCGATGGTGCTGGAGCAGAGTGAAGCGCACTTTGTCCGTAGTTTGTCTTCATGACCTGGAAGCGGTAAATATATGCTATCTGCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>252 219 175 175 33 32 30 21 20 19 15 9</canonical_bands>
                <polymorphic_bands>252 239 175 175 33 32 30 21 19 15 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAGTTGTTGGACTACGTCAT</pcr_primer_p1>
		<pcr_primer_p2>CGTCATTTCTGTTTAGTTGTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAGTTGTTGGACTACGTCATCAGGAGGAAACCAAACAAACTGGTTTTTTATGCTTTCTTATCTCGATACATTTCATTCAATAGAAAAGTTATTTAAGCACGAATTAGTATGAGAGAAGGGAAATTGACTGAAACAGGAAGAAACCAGGGGCAAAAAAGAATAGAGAAAGGGTTCTTCACTAACATTTGAAACATAGTCAGGATATGCTGATAACCGATCAATCAGCTCACAACTAAACAGAAATGACG</canonical_amplicon>
		<polymorphic_amplicon>AGAAGTTGTTGGACTACGTCATCAGGAGGAAACCAAACAAACTGGTTTTTTATGCTTTCTTATCTCGATACATTTCATTCAATAGAAAAGTTATTTAAGCACGAATTAGTATGAGAGAAGGGAAATYGACTGAAACAGGAAGAAACCAGGGGCAAAAAAGAATAGAGAAAGGGTTCTTCACTAACATTTGAAACATAGTCAGGATATGCTGATAACCGATCAATCAGCTCACAACTAAACAGAAATGACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8039</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>218260</contig_pos>
        <strand>+</strand>
        <context>ACGAGTTTAG[A/C]AAAATCAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGACAGCAGCTCTCTTCAACATTCTCTCGGCCTGAAACAACGAGTTTAG</left_flank>
        <right_flank>AAAATCAGTTTGATATAATACCAACCATGTTCGCCTGCCTTCTTGCCTCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCCCGTTAGGACACGAATGGAGCGAGAAAAGAGAGACAAGGAAGGGAACGAGAGTGAGTGGCAGTTAGAGACGCAGACATCAATGCGACTGCGAATACAACGAATATGACGCGAGAACAAGAGAGAAGAGAGAGAGTGACGTGGAATTTTGGAGCTTTAAGAATAGGAATACTGACTGAAAATGCTCTTGATGACCGCCTTACTCATCGAAAAAATAGGCATGAATGTACAACATTTCGCTTCTTAAAATCAGGCGTTCTAAAGTGAAATATGACAAAGAAACAGAAATGATTTATTGACAGTTATGCACAAAGAGCAGGTCGAGTAAAAATGTACAATGAGTTGTAAAATCCTTTAGACTACTTGGTCCAAGAAACTTTTGGAATGTCGTTGAATTCGGTCATTTCCTCCATTTGCTTGTTGAACTTTTCTACCTTCTCACGATGACTGACAGCAGCTCTCTTCAACATTCTCTCGGCCTGAAACAACGAGTTTAGAAAAATCAGTTTGATATAATACCAACCATGTTCGCCTGCCTTCTTGCCTCGAACCGAAGCTCGGCTTCAGTTTTGTGTGGGCCACTTCCGGAAGCATTTCTGGAATCTCTGAGACAGTTAGAAATCAGATACATCAGTAATTTACCGTCTAATCGTCATATCCACTTGTTTAGGATCTACAGTCGGCTTGCTCTTCTTTGCTTTCTTCGGCGCATCGGAGGACACCTTCTTCAGTTTGAGAGACCCTTTGACGACAGTATCTTTCATCTTCTATATTATGCTTGTCTGAGAAAAAAAAGGTTGAGACGCAGAGAAAAAGTGTCTGCGACTCCACTTATTATGTGCTATTTAGCATACTTGTAAAATTCCGGGCCGGGCCTGAGGAAAATTTCAAGGCCCGGTAGCAAAAATGTTGTCATTTTGAACCGAATTTTGAGCTCTCAATACAATTTTCTATATTTTTGTGCTTTTTGGATTGTTTGTCTGTTTGATCAAAAAATA</canonical>
            <polymorphic>AAGCCCGTTAGGACACGAATGGAGCGAGAAAAGAGAGACAAGGAAGGGAACGAGAGTGAGTGGCAGTTAGAGACGCAGACATCAATGCGACTGCGAATACAACGAATATGACGCGAGAACAAGAGAGAAGAGAGAGAGTGACGTGGAATTTTGGAGCTTTAAGAATAGGAATACTGACTGAAAATGCTCTTGATGACCGCCTTACTCATCGAAAAAATAGGCATGAATGTACAACATTTCGCTTCTTAAAATCAGGCGTTCTAAAGTGAAATATGACAAAGAAACAGAAATGATTTATTGACAGTTATGCACAAAGAGCAGGTCGAGTAAAAATGTACAATGAGTTGTAAAATCCTTTAGACTACTTGGTCCAAGAAACTTTTGGAATGTCGTTGAATTCGGTCATTTCCTCCATTTGCTTGTTGAACTTTTCTACCTTCTCACGATGACTGACAGCAGCTCTCTTCAACATTCTCTCGGCCTGAAACAACGAGTTTAGMAAAATCAGTTTGATATAATACCAACCATGTTCGCCTGCCTTCTTGCCTCGAACCGAAGCTCGGCTTCAGTTTTGTGTGGGCCACTTCCGGAAGCATTTCTGGAATCTCTGAGACAGTTAGAAATCAGATACATCAGTAATTTACCGTCTAATCGTCATATCCACTTGTTTAGGATCTACAGTCGGCTTGCTCTTCTTTGCTTTCTTCGGCGCATCGGAGGACACCTTCTTCAGTTTGAGAGACCCTTTGACGACAGTATCTTTCATCTTCTATATTATGCTTGTCTGAGAAAAAAAAGGTTGAGACGCAGAGAAAAAGTGTCTGCGACTCCACTTATTATGTGCTATTTAGCATACTTGTAAAATTCCGGGCCGGGCCTGAGGAAAATTTCAAGGCCCGGTAGCAAAAATGTTGTCATTTTGAACCGAATTTTGAGCTCTCAATACAATTTTCTATATTTTTGTGCTTTTTGGATTGTTTGTCTGTTTGATCAAAAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTGAACTTTTCTACCTTCTCA</pcr_primer_p1>
		<pcr_primer_p2>AAACAAGTGGATATGACGATTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTTGAACTTTTCTACCTTCTCACGATGACTGACAGCAGCTCTCTTCAACATTCTCTCGGCCTGAAACAACGAGTTTAGAAAAATCAGTTTGATATAATACCAACCATGTTCGCCTGCCTTCTTGCCTCGAACCGAAGCTCGGCTTCAGTTTTGTGTGGGCCACTTCCGGAAGCATTTCTGGAATCTCTGAGACAGTTAGAAATCAGATACATCAGTAATTTACCGTCTAATCGTCATATCCACTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>TGTTGAACTTTTCTACCTTCTCACGATGACTGACAGCAGCTCTCTTCAACATTCTCTCGGCCTGAAACAACGAGTTTAGMAAAATCAGTTTGATATAATACCAACCATGTTCGCCTGCCTTCTTGCCTCGAACCGAAGCTCGGCTTCAGTTTTGTGTGGGCCACTTCCGGAAGCATTTCTGGAATCTCTGAGACAGTTAGAAATCAGATACATCAGTAATTTACCGTCTAATCGTCATATCCACTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8050</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>267918</contig_pos>
        <strand>+</strand>
        <context>AAAGAACCTT[C/T]CAAAAACTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGCTTGTGAGAAAAATCAAAAGCCATGGAGAGTTGAAAAAAAGAACCTT</left_flank>
        <right_flank>CAAAAACTCCAAGCCATTCAGCTAGGAAGAAAGCTCCAAGCGATTCATCT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGCCTATAATAGAAGGTTCTCCTAACTTTACCATTAGGCCAATTTATCTCACTAGGGGAGGTTTTAAAATGAGGTGGAAAAAAAAAACTAAATCCGGAAAATAAGAATATTTTCAGGTTACGGCATTTTTTGTTGTGGGACCTTTGGCCACCGGCGTTTCTCTTCCACAGCTCCATTTTTTGTACCAGAATAATACAGTAATCCATGAATTATATTCTGAGACGACGTCCGTATTCAAAAAAAAATTTTCAATCATCTGGACATAGATTATTGAAATTTCTACAATTCTAGTGATCTGGGTCTGCCTGAATATTTCTATGTCTCCACGTAGATAACACGTCACATTTGCACGAAAGGAAACGGTCCTCACTGCGTGTGACTCACTGAAATTCCCCTACTGAAACAAGCTGACCCCCATGCAGCACTGTCCATCTTGTAGGGAAAAGAAAGCTTGTGAGAAAAATCAAAAGCCATGGAGAGTTGAAAAAAAGAACCTTCCAAAAACTCCAAGCCATTCAGCTAGGAAGAAAGCTCCAAGCGATTCATCTGAAATTGAGGTTGAGATCTCTTGCCGTAACTCATTGCGTAAGTTTTATACTGTTCTGTTTTTTTTTTCTATATCGAAGTCTTTTTTCCTATACGAAAAACCTTTTCACATTTCCTACAACGCCTTTTTTGTTCTTTTTCTTCACCCAACCCACAAAATTGTCTCCTGCATCGTTGCATTATCATAATCCCTCTTTTTTCTTACTCCCCCTCCACCGACAAAAAAGAGCTCATAACTAAAATGTGCTGCCATGTCCATGTCTTTTGTGAGCTTCTGTGTCCCAACTCTGCATTTTTCTTCTCGTCTCCATCACGTCTTCCGGTCCTCTTTTTGGTCCCGGAGAGGCGAGTCTTGATTGCGAAACACGAGATATTTGGAACCGCGCTTCTCCCTCTATCTCTCCAATCTTCTACTTTATTGCTTCTTTCCCTCTTTTTCATGAGTACATTTA</canonical>
            <polymorphic>GAAGCCTATAATAGAAGGTTCTCCTAACTTTACCATTAGGCCAATTTATCTCACTAGGGGAGGTTTTAAAATGAGGTGGAAAAAAAAAACTAAATCCGGAAAATAAGAATATTTTCAGGTTACGGCATTTTTTGTTGTGGGACCTTTGGCCACCGGCGTTTCTCTTCCACAGCTCCATTTTTTGTACCAGAATAATACAGTAATCCATGAATTATATTCTGAGACGACGTCCGTATTCAAAAAAAAATTTTCAATCATCTGGACATAGATTATTGAAATTTCTACAATTCTAGTGATCTGGGTCTGCCTGAATATTTCTATGTCTCCACGTAGATAACACGTCACATTTGCACGAAAGGAAACGGTCCTCACTGCGTGTGACTCACTGAAATTCCCCTACTGAAACAAGCTGACCCCCATGCAGCACTGTCCATCTTGTAGGGAAAAGAAAGCTTGTGAGAAAAATCAAAAGCCATGGAGAGTTGAAAAAAAGAACCTTYCAAAAACTCCAAGCCATTCAGCTAGGAAGAAAGCTCCAAGCGATTCATCTGAAATTGAGGTTGAGATCTCTTGCCGTAACTCATTGCGTAAGTTTTATACTGTTCTGTTTTTTTTTTCTATATCGAAGTCTTTTTTCCTATACGAAAAACCTTTTCACATTTCCTACAACGCCTTTTTTGTTCTTTTTCTTCACCCAACCCACAAAATTGTCTCCTGCATCGTTGCATTATCATAATCCCTCTTTTTTCTTACTCCCCCTCCACCGACAAAAAAGAGCTCATAACTAAAATGTGCTGCCATGTCCATGTCTTTTGTGAGCTTCTGTGTCCCAACTCTGCATTTTTCTTCTCGTCTCCATCACGTCTTCCGGTCCTCTTTTTGGTCCCGGAGAGGCGAGTCTTGATTGCGAAACACGAGATATTTGGAACCGCGCTTCTCCCTCTATCTCTCCAATCTTCTACTTTATTGCTTCTTTCCCTCTTTTTCATGAGTACATTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACGTAGATAACACGTCACATT</pcr_primer_p1>
		<pcr_primer_p2>CAAGAGATCTCAACCTCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CACGTAGATAACACGTCACATTTGCACGAAAGGAAACGGTCCTCACTGCGTGTGACTCACTGAAATTCCCCTACTGAAACAAGCTGACCCCCATGCAGCACTGTCCATCTTGTAGGGAAAAGAAAGCTTGTGAGAAAAATCAAAAGCCATGGAGAGTTGAAAAAAAGAACCTTCCAAAAACTCCAAGCCATTCAGCTAGGAAGAAAGCTCCAAGCGATTCATCTGAAATTGAGGTTGAGATCTCTTG</canonical_amplicon>
		<polymorphic_amplicon>CACGTAGATAACACGTCACATTTGCACGAAAGGAAACGGTCCTCACTGCGTGTGACTCACTGAAATTCCCCTACTGAAACAAGCTGACCCCCATGCAGCACTGTCCATCTTGTAGGGAAAAGAAAGCTTGTGAGAAAAATCAAAAGCCATGGAGAGTTGAAAAAAAGAACCTTYCAAAAACTCCAAGCCATTCAGCTAGGAAGAAAGCTCCAAGCGATTCATCTGAAATTGAGGTTGAGATCTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8051</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>330648</contig_pos>
        <strand>+</strand>
        <context>TCAACCAGAC[A/G]AAGAGAAGCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGCCGAGGAAAACTCACGCTCTCCAGAAGATAATTCTAATCAACCAGAC</left_flank>
        <right_flank>AAGAGAAGCCAGTTGATGTAATAGATATTCCATCAAGATCTGAAACACCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGAAAAAGCTGAAAGCCGACGTTGAGCTACTTGTTCAATTGATTGGTTTTGGAAACGAACATCAGAATCGAAAGTTCAATTCGTTCCGCACGGAAGCATTCTTCAGACGATGTGCACCTCCACCAAGTGCGAAGAACGTTCTAAATCAGAAAACACTGCGCGAGGTTGCACTGAATTCGCAAAAAGAGGCACTGGAAATATCGAAAGTCTACAGATATCATCCGATCCCCGATCAACTTGAAAACTTTGTTCTTCTAGCGTATAACACGCATTTCGAGTCTGCGCAGGAACGCGATTCGTATTTTCCTTCAAGTTTGACAATGTGGTCGAAAGAACCCATCGCGGCACTTCTTGCAAAATGGACTGAGAAAGATGTAGACGTCAGGGATATCGAGAAGTCTTCAACACCTGATTCTGTTGCCGATTCTTCGATTGTGGGAGACTCGATTGCCGAGGAAAACTCACGCTCTCCAGAAGATAATTCTAATCAACCAGACAAAGAGAAGCCAGTTGATGTAATAGATATTCCATCAAGATCTGAAACACCCGTCGTGGTAGATCCCGTCATAGTAAATCCTGAAGACAAAGTAGAAGAAGAAGAATCAAAAGAGAAAGAAAAAGAAAAAGACGAAGAGAGAACCATCACACCAGTCTACGAAAATGACACCGGACCTCTAGAGGATATCATAGGTAATCAATATTCAAATTTTCTAGAATAGAACCTCCTGATGTTACAGAAAGTACATATGAAATGATAGATAGATTGGCTCTTGGAGGCTTCAAGGAGATAAAAAAACCTGCATTATTCGAGAAATGTGGCAGTTTCGATGCTCTGGAATTGCTAGGACCGACCAAATTTTTCGGCTCAGATAATATGCGGAAATGCAAAAGTACAACGAATCTGTTATATGTTCCTGACTGGAATAGGCTTCATGTTAGTTTTTACTAGCAAAGAAAACAAGAAAAGTAAAAATATTATTTCAGGACAACATTCAAAG</canonical>
            <polymorphic>TCGGAAAAAGCTGAAAGCCGACGTTGAGCTACTTGTTCAATTGATTGGTTTTGGAAACGAACATCAGAATCGAAAGTTCAATTCGTTCCGCACGGAAGCATTCTTCAGACGATGTGCACCTCCACCAAGTGCGAAGAACGTTCTAAATCAGAAAACACTGCGCGAGGTTGCACTGAATTCGCAAAAAGAGGCACTGGAAATATCGAAAGTCTACAGATATCATCCGATCCCCGATCAACTTGAAAACTTTGTTCTTCTAGCGTATAACACGCATTTCGAGTCTGCGCAGGAACGCGATTCGTATTTTCCTTCAAGTTTGACAATGTGGTCGAAAGAACCCATCGCGGCACTTCTTGCAAAATGGACTGAGAAAGATGTAGACGTCAGGGATATCGAGAAGTCTTCAACACCTGATTCTGTTGCCGATTCTTCGATTGTGGGAGACTCGATTGCCGAGGAAAACTCACGCTCTCCAGAAGATAATTCTAATCAACCAGACRAAGAGAAGCCAGTTGATGTAATAGATATTCCATCAAGATCTGAAACACCCGTCGTGGTAGATCCCGTCATAGTAAATCCTGAAGACAAAGTAGAAGAAGAAGAATCAAAAGAGAAAGAAAAAGAAAAAGACGAAGAGAGAACCATCACACCAGTCTACGAAAATGACACCGGACCTCTAGAGGATATCATAGGTAATCAATATTCAAATTTTCTAGAATAGAACCTCCTGATGTTACAGAAAGTACATATGAAATGATAGATAGATTGGCTCTTGGAGGCTTCAAGGAGATAAAAAAACCTGCATTATTCGAGAAATGTGGCAGTTTCGATGCTCTGGAATTGCTAGGACCGACCAAATTTTTCGGCTCAGATAATATGCGGAAATGCAAAAGTACAACGAATCTGTTATATGTTCCTGACTGGAATAGGCTTCATGTTAGTTTTTACTAGCAAAGAAAACAAGAAAAGTAAAAATATTATTTCAGGACAACATTCAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATGGACTGAGAAAGATGTA</pcr_primer_p1>
		<pcr_primer_p2>AGGATTTACTATGACGGGATCTA</pcr_primer_p2>
		<pcr_amplicon_size>224</pcr_amplicon_size>
		<canonical_amplicon>CAAAATGGACTGAGAAAGATGTAGACGTCAGGGATATCGAGAAGTCTTCAACACCTGATTCTGTTGCCGATTCTTCGATTGTGGGAGACTCGATTGCCGAGGAAAACTCACGCTCTCCAGAAGATAATTCTAATCAACCAGACAAAGAGAAGCCAGTTGATGTAATAGATATTCCATCAAGATCTGAAACACCCGTCGTGGTAGATCCCGTCATAGTAAATCCT</canonical_amplicon>
		<polymorphic_amplicon>CAAAATGGACTGAGAAAGATGTAGACGTCAGGGATATCGAGAAGTCTTCAACACCTGATTCTGTTGCCGATTCTTCGATTGTGGGAGACTCGATTGCCGAGGAAAACTCACGCTCTCCAGAAGATAATTCTAATCAACCAGACRAAGAGAAGCCAGTTGATGTAATAGATATTCCATCAAGATCTGAAACACCCGTCGTGGTAGATCCCGTCATAGTAAATCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8052</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>330704</contig_pos>
        <strand>+</strand>
        <context>CACCCGTCGT[A/G]GTAGATCCCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGCCAGTTGATGTAATAGATATTCCATCAAGATCTGAAACACCCGTCGT</left_flank>
        <right_flank>GTAGATCCCGTCATAGTAAATCCTGAAGACAAAGTAGAAGAAGAAGAATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGAACATCAGAATCGAAAGTTCAATTCGTTCCGCACGGAAGCATTCTTCAGACGATGTGCACCTCCACCAAGTGCGAAGAACGTTCTAAATCAGAAAACACTGCGCGAGGTTGCACTGAATTCGCAAAAAGAGGCACTGGAAATATCGAAAGTCTACAGATATCATCCGATCCCCGATCAACTTGAAAACTTTGTTCTTCTAGCGTATAACACGCATTTCGAGTCTGCGCAGGAACGCGATTCGTATTTTCCTTCAAGTTTGACAATGTGGTCGAAAGAACCCATCGCGGCACTTCTTGCAAAATGGACTGAGAAAGATGTAGACGTCAGGGATATCGAGAAGTCTTCAACACCTGATTCTGTTGCCGATTCTTCGATTGTGGGAGACTCGATTGCCGAGGAAAACTCACGCTCTCCAGAAGATAATTCTAATCAACCAGACAAAGAGAAGCCAGTTGATGTAATAGATATTCCATCAAGATCTGAAACACCCGTCGTGGTAGATCCCGTCATAGTAAATCCTGAAGACAAAGTAGAAGAAGAAGAATCAAAAGAGAAAGAAAAAGAAAAAGACGAAGAGAGAACCATCACACCAGTCTACGAAAATGACACCGGACCTCTAGAGGATATCATAGGTAATCAATATTCAAATTTTCTAGAATAGAACCTCCTGATGTTACAGAAAGTACATATGAAATGATAGATAGATTGGCTCTTGGAGGCTTCAAGGAGATAAAAAAACCTGCATTATTCGAGAAATGTGGCAGTTTCGATGCTCTGGAATTGCTAGGACCGACCAAATTTTTCGGCTCAGATAATATGCGGAAATGCAAAAGTACAACGAATCTGTTATATGTTCCTGACTGGAATAGGCTTCATGTTAGTTTTTACTAGCAAAGAAAACAAGAAAAGTAAAAATATTATTTCAGGACAACATTCAAAGTGTGCTTTATCGGGATATCAATGAACCATACTCTGAACATAGCTATGCAATGATTG</canonical>
            <polymorphic>ACGAACATCAGAATCGAAAGTTCAATTCGTTCCGCACGGAAGCATTCTTCAGACGATGTGCACCTCCACCAAGTGCGAAGAACGTTCTAAATCAGAAAACACTGCGCGAGGTTGCACTGAATTCGCAAAAAGAGGCACTGGAAATATCGAAAGTCTACAGATATCATCCGATCCCCGATCAACTTGAAAACTTTGTTCTTCTAGCGTATAACACGCATTTCGAGTCTGCGCAGGAACGCGATTCGTATTTTCCTTCAAGTTTGACAATGTGGTCGAAAGAACCCATCGCGGCACTTCTTGCAAAATGGACTGAGAAAGATGTAGACGTCAGGGATATCGAGAAGTCTTCAACACCTGATTCTGTTGCCGATTCTTCGATTGTGGGAGACTCGATTGCCGAGGAAAACTCACGCTCTCCAGAAGATAATTCTAATCAACCAGACAAAGAGAAGCCAGTTGATGTAATAGATATTCCATCAAGATCTGAAACACCCGTCGTRGTAGATCCCGTCATAGTAAATCCTGAAGACAAAGTAGAAGAAGAAGAATCAAAAGAGAAAGAAAAAGAAAAAGACGAAGAGAGAACCATCACACCAGTCTACGAAAATGACACCGGACCTCTAGAGGATATCATAGGTAATCAATATTCAAATTTTCTAGAATAGAACCTCCTGATGTTACAGAAAGTACATATGAAATGATAGATAGATTGGCTCTTGGAGGCTTCAAGGAGATAAAAAAACCTGCATTATTCGAGAAATGTGGCAGTTTCGATGCTCTGGAATTGCTAGGACCGACCAAATTTTTCGGCTCAGATAATATGCGGAAATGCAAAAGTACAACGAATCTGTTATATGTTCCTGACTGGAATAGGCTTCATGTTAGTTTTTACTAGCAAAGAAAACAAGAAAAGTAAAAATATTATTTCAGGACAACATTCAAAGTGTGCTTTATCGGGATATCAATGAACCATACTCTGAACATAGCTATGCAATGATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>182 152 91 81 76 60 58 52 36 30 27 26 24 22 21 19 15 9 7 6 2 2 2</canonical_bands>
                <polymorphic_bands>182 152 100 81 76 60 58 52 36 30 27 26 24 22 21 19 15 7 6 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAGAAGCCAGTTGATGTAAT</pcr_primer_p1>
		<pcr_primer_p2>ATGTACTTTCTGTAACATCAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGAGAAGCCAGTTGATGTAATAGATATTCCATCAAGATCTGAAACACCCGTCGTGGTAGATCCCGTCATAGTAAATCCTGAAGACAAAGTAGAAGAAGAAGAATCAAAAGAGAAAGAAAAAGAAAAAGACGAAGAGAGAACCATCACACCAGTCTACGAAAATGACACCGGACCTCTAGAGGATATCATAGGTAATCAATATTCAAATTTTCTAGAATAGAACCTCCTGATGTTACAGAAAGTACAT</canonical_amplicon>
		<polymorphic_amplicon>AAGAGAAGCCAGTTGATGTAATAGATATTCCATCAAGATCTGAAACACCCGTCGTRGTAGATCCCGTCATAGTAAATCCTGAAGACAAAGTAGAAGAAGAAGAATCAAAAGAGAAAGAAAAAGAAAAAGACGAAGAGAGAACCATCACACCAGTCTACGAAAATGACACCGGACCTCTAGAGGATATCATAGGTAATCAATATTCAAATTTTCTAGAATAGAACCTCCTGATGTTACAGAAAGTACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8053</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>330801</contig_pos>
        <strand>+</strand>
        <context>CATCACACCA[A/G]TCTACGAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCAAAAGAGAAAGAAAAAGAAAAAGACGAAGAGAGAACCATCACACCA</left_flank>
        <right_flank>TCTACGAAAATGACACCGGACCTCTAGAGGATATCATAGGTAATCAATAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACACTGCGCGAGGTTGCACTGAATTCGCAAAAAGAGGCACTGGAAATATCGAAAGTCTACAGATATCATCCGATCCCCGATCAACTTGAAAACTTTGTTCTTCTAGCGTATAACACGCATTTCGAGTCTGCGCAGGAACGCGATTCGTATTTTCCTTCAAGTTTGACAATGTGGTCGAAAGAACCCATCGCGGCACTTCTTGCAAAATGGACTGAGAAAGATGTAGACGTCAGGGATATCGAGAAGTCTTCAACACCTGATTCTGTTGCCGATTCTTCGATTGTGGGAGACTCGATTGCCGAGGAAAACTCACGCTCTCCAGAAGATAATTCTAATCAACCAGACAAAGAGAAGCCAGTTGATGTAATAGATATTCCATCAAGATCTGAAACACCCGTCGTGGTAGATCCCGTCATAGTAAATCCTGAAGACAAAGTAGAAGAAGAAGAATCAAAAGAGAAAGAAAAAGAAAAAGACGAAGAGAGAACCATCACACCAGTCTACGAAAATGACACCGGACCTCTAGAGGATATCATAGGTAATCAATATTCAAATTTTCTAGAATAGAACCTCCTGATGTTACAGAAAGTACATATGAAATGATAGATAGATTGGCTCTTGGAGGCTTCAAGGAGATAAAAAAACCTGCATTATTCGAGAAATGTGGCAGTTTCGATGCTCTGGAATTGCTAGGACCGACCAAATTTTTCGGCTCAGATAATATGCGGAAATGCAAAAGTACAACGAATCTGTTATATGTTCCTGACTGGAATAGGCTTCATGTTAGTTTTTACTAGCAAAGAAAACAAGAAAAGTAAAAATATTATTTCAGGACAACATTCAAAGTGTGCTTTATCGGGATATCAATGAACCATACTCTGAACATAGCTATGCAATGATTGGTTTAAACAAACCGTTCGATACAATGCCTGATTTCCAAAGCATGCCCTTCTCAATAGAGGACTACTACCCTGACGAAGAATCCATCAAGGATACTGA</canonical>
            <polymorphic>AACACTGCGCGAGGTTGCACTGAATTCGCAAAAAGAGGCACTGGAAATATCGAAAGTCTACAGATATCATCCGATCCCCGATCAACTTGAAAACTTTGTTCTTCTAGCGTATAACACGCATTTCGAGTCTGCGCAGGAACGCGATTCGTATTTTCCTTCAAGTTTGACAATGTGGTCGAAAGAACCCATCGCGGCACTTCTTGCAAAATGGACTGAGAAAGATGTAGACGTCAGGGATATCGAGAAGTCTTCAACACCTGATTCTGTTGCCGATTCTTCGATTGTGGGAGACTCGATTGCCGAGGAAAACTCACGCTCTCCAGAAGATAATTCTAATCAACCAGACAAAGAGAAGCCAGTTGATGTAATAGATATTCCATCAAGATCTGAAACACCCGTCGTGGTAGATCCCGTCATAGTAAATCCTGAAGACAAAGTAGAAGAAGAAGAATCAAAAGAGAAAGAAAAAGAAAAAGACGAAGAGAGAACCATCACACCARTCTACGAAAATGACACCGGACCTCTAGAGGATATCATAGGTAATCAATATTCAAATTTTCTAGAATAGAACCTCCTGATGTTACAGAAAGTACATATGAAATGATAGATAGATTGGCTCTTGGAGGCTTCAAGGAGATAAAAAAACCTGCATTATTCGAGAAATGTGGCAGTTTCGATGCTCTGGAATTGCTAGGACCGACCAAATTTTTCGGCTCAGATAATATGCGGAAATGCAAAAGTACAACGAATCTGTTATATGTTCCTGACTGGAATAGGCTTCATGTTAGTTTTTACTAGCAAAGAAAACAAGAAAAGTAAAAATATTATTTCAGGACAACATTCAAAGTGTGCTTTATCGGGATATCAATGAACCATACTCTGAACATAGCTATGCAATGATTGGTTTAAACAAACCGTTCGATACAATGCCTGATTTCCAAAGCATGCCCTTCTCAATAGAGGACTACTACCCTGACGAAGAATCCATCAAGGATACTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>499 276 168 57</canonical_bands>
                <polymorphic_bands>775 168 57</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 276 168 58</canonical_bands>
                <polymorphic_bands>774 168 58</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATTCCATCAAGATCTGAAACA</pcr_primer_p1>
		<pcr_primer_p2>GAGCCAATCTATCTATCATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATATTCCATCAAGATCTGAAACACCCGTCGTGGTAGATCCCGTCATAGTAAATCCTGAAGACAAAGTAGAAGAAGAAGAATCAAAAGAGAAAGAAAAAGAAAAAGACGAAGAGAGAACCATCACACCAGTCTACGAAAATGACACCGGACCTCTAGAGGATATCATAGGTAATCAATATTCAAATTTTCTAGAATAGAACCTCCTGATGTTACAGAAAGTACATATGAAATGATAGATAGATTGGCTC</canonical_amplicon>
		<polymorphic_amplicon>ATATTCCATCAAGATCTGAAACACCCGTCGTGGTAGATCCCGTCATAGTAAATCCTGAAGACAAAGTAGAAGAAGAAGAATCAAAAGAGAAAGAAAAAGAAAAAGACGAAGAGAGAACCATCACACCARTCTACGAAAATGACACCGGACCTCTAGAGGATATCATAGGTAATCAATATTCAAATTTTCTAGAATAGAACCTCCTGATGTTACAGAAAGTACATATGAAATGATAGATAGATTGGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8054</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>330988</contig_pos>
        <strand>+</strand>
        <context>ATGCTCTGGA[A/T]TTGCTAGGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATAAAAAAACCTGCATTATTCGAGAAATGTGGCAGTTTCGATGCTCTGGA</left_flank>
        <right_flank>TTGCTAGGACCGACCAAATTTTTCGGCTCAGATAATATGCGGAAATGCAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGCGGCACTTCTTGCAAAATGGACTGAGAAAGATGTAGACGTCAGGGATATCGAGAAGTCTTCAACACCTGATTCTGTTGCCGATTCTTCGATTGTGGGAGACTCGATTGCCGAGGAAAACTCACGCTCTCCAGAAGATAATTCTAATCAACCAGACAAAGAGAAGCCAGTTGATGTAATAGATATTCCATCAAGATCTGAAACACCCGTCGTGGTAGATCCCGTCATAGTAAATCCTGAAGACAAAGTAGAAGAAGAAGAATCAAAAGAGAAAGAAAAAGAAAAAGACGAAGAGAGAACCATCACACCAGTCTACGAAAATGACACCGGACCTCTAGAGGATATCATAGGTAATCAATATTCAAATTTTCTAGAATAGAACCTCCTGATGTTACAGAAAGTACATATGAAATGATAGATAGATTGGCTCTTGGAGGCTTCAAGGAGATAAAAAAACCTGCATTATTCGAGAAATGTGGCAGTTTCGATGCTCTGGAATTGCTAGGACCGACCAAATTTTTCGGCTCAGATAATATGCGGAAATGCAAAAGTACAACGAATCTGTTATATGTTCCTGACTGGAATAGGCTTCATGTTAGTTTTTACTAGCAAAGAAAACAAGAAAAGTAAAAATATTATTTCAGGACAACATTCAAAGTGTGCTTTATCGGGATATCAATGAACCATACTCTGAACATAGCTATGCAATGATTGGTTTAAACAAACCGTTCGATACAATGCCTGATTTCCAAAGCATGCCCTTCTCAATAGAGGACTACTACCCTGACGAAGAATCCATCAAGGATACTGAAGAATCCATCCGAGACGATGATTCCATAAGAGAGAGCCCGTCTCCCTCAGAATTCCTATCTCCGAAACCCCCTGACACGGATGCTTATGAAAATTTTGTGGATATTTCTAAAAAGCGGGGAAGACCGAAAGGCTCAAAGAACCGAACAGATGGCGAAGGCTCTAAAAGTAGAAGAAGTTCAGTTGGA</canonical>
            <polymorphic>ATCGCGGCACTTCTTGCAAAATGGACTGAGAAAGATGTAGACGTCAGGGATATCGAGAAGTCTTCAACACCTGATTCTGTTGCCGATTCTTCGATTGTGGGAGACTCGATTGCCGAGGAAAACTCACGCTCTCCAGAAGATAATTCTAATCAACCAGACAAAGAGAAGCCAGTTGATGTAATAGATATTCCATCAAGATCTGAAACACCCGTCGTGGTAGATCCCGTCATAGTAAATCCTGAAGACAAAGTAGAAGAAGAAGAATCAAAAGAGAAAGAAAAAGAAAAAGACGAAGAGAGAACCATCACACCAGTCTACGAAAATGACACCGGACCTCTAGAGGATATCATAGGTAATCAATATTCAAATTTTCTAGAATAGAACCTCCTGATGTTACAGAAAGTACATATGAAATGATAGATAGATTGGCTCTTGGAGGCTTCAAGGAGATAAAAAAACCTGCATTATTCGAGAAATGTGGCAGTTTCGATGCTCTGGAWTTGCTAGGACCGACCAAATTTTTCGGCTCAGATAATATGCGGAAATGCAAAAGTACAACGAATCTGTTATATGTTCCTGACTGGAATAGGCTTCATGTTAGTTTTTACTAGCAAAGAAAACAAGAAAAGTAAAAATATTATTTCAGGACAACATTCAAAGTGTGCTTTATCGGGATATCAATGAACCATACTCTGAACATAGCTATGCAATGATTGGTTTAAACAAACCGTTCGATACAATGCCTGATTTCCAAAGCATGCCCTTCTCAATAGAGGACTACTACCCTGACGAAGAATCCATCAAGGATACTGAAGAATCCATCCGAGACGATGATTCCATAAGAGAGAGCCCGTCTCCCTCAGAATTCCTATCTCCGAAACCCCCTGACACGGATGCTTATGAAAATTTTGTGGATATTTCTAAAAAGCGGGGAAGACCGAAAGGCTCAAAGAACCGAACAGATGGCGAAGGCTCTAAAAGTAGAAGAAGTTCAGTTGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>347 225 141 132 96 41 18</canonical_bands>
                <polymorphic_bands>347 225 150 141 96 41</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGATAGATAGATTGGCTCTTG</pcr_primer_p1>
		<pcr_primer_p2>ACTTTGAATGTTGTCCTGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATGATAGATAGATTGGCTCTTGGAGGCTTCAAGGAGATAAAAAAACCTGCATTATTCGAGAAATGTGGCAGTTTCGATGCTCTGGAATTGCTAGGACCGACCAAATTTTTCGGCTCAGATAATATGCGGAAATGCAAAAGTACAACGAATCTGTTATATGTTCCTGACTGGAATAGGCTTCATGTTAGTTTTTACTAGCAAAGAAAACAAGAAAAGTAAAAATATTATTTCAGGACAACATTCAAAGT</canonical_amplicon>
		<polymorphic_amplicon>AATGATAGATAGATTGGCTCTTGGAGGCTTCAAGGAGATAAAAAAACCTGCATTATTCGAGAAATGTGGCAGTTTCGATGCTCTGGAWTTGCTAGGACCGACCAAATTTTTCGGCTCAGATAATATGCGGAAATGCAAAAGTACAACGAATCTGTTATATGTTCCTGACTGGAATAGGCTTCATGTTAGTTTTTACTAGCAAAGAAAACAAGAAAAGTAAAAATATTATTTCAGGACAACATTCAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8055</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>333983</contig_pos>
        <strand>+</strand>
        <context>GCYGTCRCAA[A/T]GTATCAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGCTGTCGCAA</left_flank>
        <right_flank>GTATCAAAAATAACCAAATTCTTCGAAAAAGACGCTGCGAGACCTTCATT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTCAATTTATCTCAATTTCTGTGAAAGATATAAGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTGTCATGTTTTTGATATCTTTCACATGAATAGAGATAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTCTAGTAGATACAGTTTTTCGAATTTCTGATTTTCCCAGCGCTACCGCCTCGAACAACGCAAACAACGACCGAAACAAGTTCGAATGGATGATTTCCTGTTTAAAGCGCGAAGAGTTGATAAAGGAGCCAGAGAATTCGGACTGCACACCACTCACGAACCAAAAAGAGGCAGTAAAAAAAAGAGGGATTCGATTGAAATGCTAGAAGTAAAAAAAGCGGATTACGAAAGGGTGAAACAGAAGAAGAGAGACGAAGTGATCGAGAAAAGGAAAGCGGAAGTGGATGAACTGGATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGCTGTCGCAATGTATCAAAAATAACCAAATTCTTCGAAAAAGACGCTGCGAGACCTTCATTTCAATCTCCAAAAAGATCGAGCAATTCGGAATCATATGCAAGCGATAGTTTTTTAAATGACACATATTCTACGCCAATAAAGGAAACTGTCCCTGAAACCTATTCAACGCCAACGTCTTCTAAAATCAGAAAGTGCTCGGAGCGAACCACATTTTTCGATAAAGGACCTTCTACTTCTTCAGCTGCACTTTTCCAATCCCCAGCGAGAAAAATCACAATCAACGATCCGAATTCGTACTACTCCAGCGAAACGGTCCTAGACGACACTTTATGCTCAACTCCAAATAGATCTTCACTTGTGGAAACAGTTCCTTTTCCTTCTTCAAGTCCTGCTAGATCGCAAATGACACCGAAGAGAGTACATCCTGGTGGAAGATCCATCATTGAACTGGTCAAGCCGAATCCGATAAAAAGGAAAGACTCTTCAAAAAAGCAAGATATAGTAAGTTT</canonical>
            <polymorphic>GAGTCAATTTATCTCAATTTCTGTGAAAGATATAAGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTGTCATGTTTTTGATATCTTTCACATGAATAGAGATAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTCTAGTAGATACAGTTTTTCGAATTTCTGATTTTCCCAGCGCTACCGCCTCGAACAACGCAAACAACGACCGAAACAAGTTCGAATGGATGATTTCCTGTTTAAAGCGCGAAGAGTTGATAAAGGAGCCAGAGAATTCGGACTGCACACCACTCACGAACCAAAAAGAGGCAGTAAAAAAAAGAGGGATTCGATTGAAATGCTAGAAGTAAAAAAAGCGGATTACGAAAGGGTGAAACAGAAGAAGAGAGACGAAGTGATCGAGAAAAGGAAAGCGGAAGTGGATGAACTGGATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGCTGTCGCAAWGTATCAAAAATAACCAAATTCTTCGAAAAAGACGCTGCGAGACCTTCATTTCAATCTCCAAAAAGATCGAGCAATTCGGAATCATATGCAAGCGATAGTTTTTTAAATGACACATATTCTACGCCAATAAAGGAAACTGTCCCTGAAACCTATTCAACGCCAACGTCTTCTAAAATCAGAAAGTGCTCGGAGCGAACCACATTTTTCGATAAAGGACCTTCTACTTCTTCAGCTGCACTTTTCCAATCCCCAGCGAGAAAAATCACAATCAACGATCCGAATTCGTACTACTCCAGCGAAACGGTCCTAGACGACACTTTATGCTCAACTCCAAATAGATCTTCACTTGTGGAAACAGTTCCTTTTCCTTCTTCAAGTCCTGCTAGATCGCAAATGACACCGAAGAGAGTACATCCTGGTGGAAGATCCATCATTGAACTGGTCAAGCCGAATCCGATAAAAAGGAAAGACTCTTCAAAAAAGCAAGATATAGTAAGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACAGAAGAAGAGAGACGAAGT</pcr_primer_p1>
		<pcr_primer_p2>CTTTATTGGCGTAGAATATGTGT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AAACAGAAGAAGAGAGACGAAGTGATCGAGAAAAGGAAAGCGGAAGTGGATGAACTGGATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGCTGTCGCAATGTATCAAAAATAACCAAATTCTTCGAAAAAGACGCTGCGAGACCTTCATTTCAATCTCCAAAAAGATCGAGCAATTCGGAATCATATGCAAGCGATAGTTTTTTAAATGACACATATTCTACGCCAATAAAG</canonical_amplicon>
		<polymorphic_amplicon>AAACAGAAGAAGAGAGACGAAGTGATCGAGAAAAGGAAAGCGGAAGTGGATGAACTGGATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGCTGTCGCAAWGTATCAAAAATAACCAAATTCTTCGAAAAAGACGCTGCGAGACCTTCATTTCAATCTCCAAAAAGATCGAGCAATTCGGAATCATATGCAAGCGATAGTTTTTTAAATGACACATATTCTACGCCAATAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8056</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>333979</contig_pos>
        <strand>+</strand>
        <context>AGAAGCYGTC[A/G]CAAWGTATCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTGGATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGCTGTC</left_flank>
        <right_flank>CAATGTATCAAAAATAACCAAATTCTTCGAAAAAGACGCTGCGAGACCTT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTGAGTCAATTTATCTCAATTTCTGTGAAAGATATAAGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTGTCATGTTTTTGATATCTTTCACATGAATAGAGATAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTCTAGTAGATACAGTTTTTCGAATTTCTGATTTTCCCAGCGCTACCGCCTCGAACAACGCAAACAACGACCGAAACAAGTTCGAATGGATGATTTCCTGTTTAAAGCGCGAAGAGTTGATAAAGGAGCCAGAGAATTCGGACTGCACACCACTCACGAACCAAAAAGAGGCAGTAAAAAAAAGAGGGATTCGATTGAAATGCTAGAAGTAAAAAAAGCGGATTACGAAAGGGTGAAACAGAAGAAGAGAGACGAAGTGATCGAGAAAAGGAAAGCGGAAGTGGATGAACTGGATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGCTGTCGCAATGTATCAAAAATAACCAAATTCTTCGAAAAAGACGCTGCGAGACCTTCATTTCAATCTCCAAAAAGATCGAGCAATTCGGAATCATATGCAAGCGATAGTTTTTTAAATGACACATATTCTACGCCAATAAAGGAAACTGTCCCTGAAACCTATTCAACGCCAACGTCTTCTAAAATCAGAAAGTGCTCGGAGCGAACCACATTTTTCGATAAAGGACCTTCTACTTCTTCAGCTGCACTTTTCCAATCCCCAGCGAGAAAAATCACAATCAACGATCCGAATTCGTACTACTCCAGCGAAACGGTCCTAGACGACACTTTATGCTCAACTCCAAATAGATCTTCACTTGTGGAAACAGTTCCTTTTCCTTCTTCAAGTCCTGCTAGATCGCAAATGACACCGAAGAGAGTACATCCTGGTGGAAGATCCATCATTGAACTGGTCAAGCCGAATCCGATAAAAAGGAAAGACTCTTCAAAAAAGCAAGATATAGTAA</canonical>
            <polymorphic>CTTTGAGTCAATTTATCTCAATTTCTGTGAAAGATATAAGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTGTCATGTTTTTGATATCTTTCACATGAATAGAGATAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTCTAGTAGATACAGTTTTTCGAATTTCTGATTTTCCCAGCGCTACCGCCTCGAACAACGCAAACAACGACCGAAACAAGTTCGAATGGATGATTTCCTGTTTAAAGCGCGAAGAGTTGATAAAGGAGCCAGAGAATTCGGACTGCACACCACTCACGAACCAAAAAGAGGCAGTAAAAAAAAGAGGGATTCGATTGAAATGCTAGAAGTAAAAAAAGCGGATTACGAAAGGGTGAAACAGAAGAAGAGAGACGAAGTGATCGAGAAAAGGAAAGCGGAAGTGGATGAACTGGATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGCTGTCRCAATGTATCAAAAATAACCAAATTCTTCGAAAAAGACGCTGCGAGACCTTCATTTCAATCTCCAAAAAGATCGAGCAATTCGGAATCATATGCAAGCGATAGTTTTTTAAATGACACATATTCTACGCCAATAAAGGAAACTGTCCCTGAAACCTATTCAACGCCAACGTCTTCTAAAATCAGAAAGTGCTCGGAGCGAACCACATTTTTCGATAAAGGACCTTCTACTTCTTCAGCTGCACTTTTCCAATCCCCAGCGAGAAAAATCACAATCAACGATCCGAATTCGTACTACTCCAGCGAAACGGTCCTAGACGACACTTTATGCTCAACTCCAAATAGATCTTCACTTGTGGAAACAGTTCCTTTTCCTTCTTCAAGTCCTGCTAGATCGCAAATGACACCGAAGAGAGTACATCCTGGTGGAAGATCCATCATTGAACTGGTCAAGCCGAATCCGATAAAAAGGAAAGACTCTTCAAAAAAGCAAGATATAGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACAGAAGAAGAGAGACGAAGT</pcr_primer_p1>
		<pcr_primer_p2>CTTTATTGGCGTAGAATATGTGT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AAACAGAAGAAGAGAGACGAAGTGATCGAGAAAAGGAAAGCGGAAGTGGATGAACTGGATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGCTGTCGCAATGTATCAAAAATAACCAAATTCTTCGAAAAAGACGCTGCGAGACCTTCATTTCAATCTCCAAAAAGATCGAGCAATTCGGAATCATATGCAAGCGATAGTTTTTTAAATGACACATATTCTACGCCAATAAAG</canonical_amplicon>
		<polymorphic_amplicon>AAACAGAAGAAGAGAGACGAAGTGATCGAGAAAAGGAAAGCGGAAGTGGATGAACTGGATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGCTGTCRCAATGTATCAAAAATAACCAAATTCTTCGAAAAAGACGCTGCGAGACCTTCATTTCAATCTCCAAAAAGATCGAGCAATTCGGAATCATATGCAAGCGATAGTTTTTTAAATGACACATATTCTACGCCAATAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8057</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>333975</contig_pos>
        <strand>+</strand>
        <context>AGTGAGAAGC[C/T]GTCRCAAWGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGAACTGGATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGC</left_flank>
        <right_flank>GTCGCAATGTATCAAAAATAACCAAATTCTTCGAAAAAGACGCTGCGAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAACTTTGAGTCAATTTATCTCAATTTCTGTGAAAGATATAAGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTGTCATGTTTTTGATATCTTTCACATGAATAGAGATAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTCTAGTAGATACAGTTTTTCGAATTTCTGATTTTCCCAGCGCTACCGCCTCGAACAACGCAAACAACGACCGAAACAAGTTCGAATGGATGATTTCCTGTTTAAAGCGCGAAGAGTTGATAAAGGAGCCAGAGAATTCGGACTGCACACCACTCACGAACCAAAAAGAGGCAGTAAAAAAAAGAGGGATTCGATTGAAATGCTAGAAGTAAAAAAAGCGGATTACGAAAGGGTGAAACAGAAGAAGAGAGACGAAGTGATCGAGAAAAGGAAAGCGGAAGTGGATGAACTGGATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGCTGTCGCAATGTATCAAAAATAACCAAATTCTTCGAAAAAGACGCTGCGAGACCTTCATTTCAATCTCCAAAAAGATCGAGCAATTCGGAATCATATGCAAGCGATAGTTTTTTAAATGACACATATTCTACGCCAATAAAGGAAACTGTCCCTGAAACCTATTCAACGCCAACGTCTTCTAAAATCAGAAAGTGCTCGGAGCGAACCACATTTTTCGATAAAGGACCTTCTACTTCTTCAGCTGCACTTTTCCAATCCCCAGCGAGAAAAATCACAATCAACGATCCGAATTCGTACTACTCCAGCGAAACGGTCCTAGACGACACTTTATGCTCAACTCCAAATAGATCTTCACTTGTGGAAACAGTTCCTTTTCCTTCTTCAAGTCCTGCTAGATCGCAAATGACACCGAAGAGAGTACATCCTGGTGGAAGATCCATCATTGAACTGGTCAAGCCGAATCCGATAAAAAGGAAAGACTCTTCAAAAAAGCAAGATATA</canonical>
            <polymorphic>TCAACTTTGAGTCAATTTATCTCAATTTCTGTGAAAGATATAAGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTGTCATGTTTTTGATATCTTTCACATGAATAGAGATAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTCTAGTAGATACAGTTTTTCGAATTTCTGATTTTCCCAGCGCTACCGCCTCGAACAACGCAAACAACGACCGAAACAAGTTCGAATGGATGATTTCCTGTTTAAAGCGCGAAGAGTTGATAAAGGAGCCAGAGAATTCGGACTGCACACCACTCACGAACCAAAAAGAGGCAGTAAAAAAAAGAGGGATTCGATTGAAATGCTAGAAGTAAAAAAAGCGGATTACGAAAGGGTGAAACAGAAGAAGAGAGACGAAGTGATCGAGAAAAGGAAAGCGGAAGTGGATGAACTGGATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGCYGTCGCAATGTATCAAAAATAACCAAATTCTTCGAAAAAGACGCTGCGAGACCTTCATTTCAATCTCCAAAAAGATCGAGCAATTCGGAATCATATGCAAGCGATAGTTTTTTAAATGACACATATTCTACGCCAATAAAGGAAACTGTCCCTGAAACCTATTCAACGCCAACGTCTTCTAAAATCAGAAAGTGCTCGGAGCGAACCACATTTTTCGATAAAGGACCTTCTACTTCTTCAGCTGCACTTTTCCAATCCCCAGCGAGAAAAATCACAATCAACGATCCGAATTCGTACTACTCCAGCGAAACGGTCCTAGACGACACTTTATGCTCAACTCCAAATAGATCTTCACTTGTGGAAACAGTTCCTTTTCCTTCTTCAAGTCCTGCTAGATCGCAAATGACACCGAAGAGAGTACATCCTGGTGGAAGATCCATCATTGAACTGGTCAAGCCGAATCCGATAAAAAGGAAAGACTCTTCAAAAAAGCAAGATATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>358 260 242 140</canonical_bands>
                <polymorphic_bands>600 260 140</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>242 215 205 140 129 45 24</canonical_bands>
                <polymorphic_bands>447 215 140 129 45 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACAGAAGAAGAGAGACGAAGT</pcr_primer_p1>
		<pcr_primer_p2>CTTTATTGGCGTAGAATATGTGT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AAACAGAAGAAGAGAGACGAAGTGATCGAGAAAAGGAAAGCGGAAGTGGATGAACTGGATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGCTGTCGCAATGTATCAAAAATAACCAAATTCTTCGAAAAAGACGCTGCGAGACCTTCATTTCAATCTCCAAAAAGATCGAGCAATTCGGAATCATATGCAAGCGATAGTTTTTTAAATGACACATATTCTACGCCAATAAAG</canonical_amplicon>
		<polymorphic_amplicon>AAACAGAAGAAGAGAGACGAAGTGATCGAGAAAAGGAAAGCGGAAGTGGATGAACTGGATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGCYGTCGCAATGTATCAAAAATAACCAAATTCTTCGAAAAAGACGCTGCGAGACCTTCATTTCAATCTCCAAAAAGATCGAGCAATTCGGAATCATATGCAAGCGATAGTTTTTTAAATGACACATATTCTACGCCAATAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8058</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>333865</contig_pos>
        <strand>+</strand>
        <context>AAAGCGGATT[A/T]CGAAAGGGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAAAAAAAGAGGGATTCGATTGAAATGCTAGAAGTAAAAAAAGCGGATT</left_flank>
        <right_flank>CGAAAGGGTGAAACAGAAGAAGAGAGACGAAGTGATCGAGAAAAGGAAAG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTAAAACCCATGATGATGGTCCGTTATTGCAAGAAGACTTTTTATCACCAGACAACATCAAAGTTAGTATTGATACGATATTTCCTGTAATAGAAGTCCACCCAAATCGTCAACTTTGAGTCAATTTATCTCAATTTCTGTGAAAGATATAAGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTGTCATGTTTTTGATATCTTTCACATGAATAGAGATAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTCTAGTAGATACAGTTTTTCGAATTTCTGATTTTCCCAGCGCTACCGCCTCGAACAACGCAAACAACGACCGAAACAAGTTCGAATGGATGATTTCCTGTTTAAAGCGCGAAGAGTTGATAAAGGAGCCAGAGAATTCGGACTGCACACCACTCACGAACCAAAAAGAGGCAGTAAAAAAAAGAGGGATTCGATTGAAATGCTAGAAGTAAAAAAAGCGGATTACGAAAGGGTGAAACAGAAGAAGAGAGACGAAGTGATCGAGAAAAGGAAAGCGGAAGTGGATGAACTGGATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGCTGTCGCAATGTATCAAAAATAACCAAATTCTTCGAAAAAGACGCTGCGAGACCTTCATTTCAATCTCCAAAAAGATCGAGCAATTCGGAATCATATGCAAGCGATAGTTTTTTAAATGACACATATTCTACGCCAATAAAGGAAACTGTCCCTGAAACCTATTCAACGCCAACGTCTTCTAAAATCAGAAAGTGCTCGGAGCGAACCACATTTTTCGATAAAGGACCTTCTACTTCTTCAGCTGCACTTTTCCAATCCCCAGCGAGAAAAATCACAATCAACGATCCGAATTCGTACTACTCCAGCGAAACGGTCCTAGACGACACTTTATGCTCAACTCCAAATAGATCTTCACTTGTGGAAACAGTTCCTTTTCCTTCTTCAAGTCCTG</canonical>
            <polymorphic>ACTAAAACCCATGATGATGGTCCGTTATTGCAAGAAGACTTTTTATCACCAGACAACATCAAAGTTAGTATTGATACGATATTTCCTGTAATAGAAGTCCACCCAAATCGTCAACTTTGAGTCAATTTATCTCAATTTCTGTGAAAGATATAAGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTGTCATGTTTTTGATATCTTTCACATGAATAGAGATAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTCTAGTAGATACAGTTTTTCGAATTTCTGATTTTCCCAGCGCTACCGCCTCGAACAACGCAAACAACGACCGAAACAAGTTCGAATGGATGATTTCCTGTTTAAAGCGCGAAGAGTTGATAAAGGAGCCAGAGAATTCGGACTGCACACCACTCACGAACCAAAAAGAGGCAGTAAAAAAAAGAGGGATTCGATTGAAATGCTAGAAGTAAAAAAAGCGGATTWCGAAAGGGTGAAACAGAAGAAGAGAGACGAAGTGATCGAGAAAAGGAAAGCGGAAGTGGATGAACTGGATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGCTGTCGCAATGTATCAAAAATAACCAAATTCTTCGAAAAAGACGCTGCGAGACCTTCATTTCAATCTCCAAAAAGATCGAGCAATTCGGAATCATATGCAAGCGATAGTTTTTTAAATGACACATATTCTACGCCAATAAAGGAAACTGTCCCTGAAACCTATTCAACGCCAACGTCTTCTAAAATCAGAAAGTGCTCGGAGCGAACCACATTTTTCGATAAAGGACCTTCTACTTCTTCAGCTGCACTTTTCCAATCCCCAGCGAGAAAAATCACAATCAACGATCCGAATTCGTACTACTCCAGCGAAACGGTCCTAGACGACACTTTATGCTCAACTCCAAATAGATCTTCACTTGTGGAAACAGTTCCTTTTCCTTCTTCAAGTCCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGATAAAGGAGCCAGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>CGAAGAATTTGGTTATTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTGATAAAGGAGCCAGAGAATTCGGACTGCACACCACTCACGAACCAAAAAGAGGCAGTAAAAAAAAGAGGGATTCGATTGAAATGCTAGAAGTAAAAAAAGCGGATTACGAAAGGGTGAAACAGAAGAAGAGAGACGAAGTGATCGAGAAAAGGAAAGCGGAAGTGGATGAACTGGATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGCTGTCGCAATGTATCAAAAATAACCAAATTCTTCG</canonical_amplicon>
		<polymorphic_amplicon>TTGATAAAGGAGCCAGAGAATTCGGACTGCACACCACTCACGAACCAAAAAGAGGCAGTAAAAAAAAGAGGGATTCGATTGAAATGCTAGAAGTAAAAAAAGCGGATTWCGAAAGGGTGAAACAGAAGAAGAGAGACGAAGTGATCGAGAAAAGGAAAGCGGAAGTGGATGAACTGGATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGCTGTCGCAATGTATCAAAAATAACCAAATTCTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8059</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>333852</contig_pos>
        <strand></strand>
        <context>GCTAGAAGTA[A/G]AAAAAGCGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAAAAGAGGCAGTAAAAAAAAGAGGGATTCGATTGAAATGCTAGAAGTA</left_flank>
        <right_flank>AAAAAGCGGATTACGAAAGGGTGAAACAGAAGAAGAGAGACGAAGTGATC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATCTTCAAAAACTAAAACCCATGATGATGGTCCGTTATTGCAAGAAGACTTTTTATCACCAGACAACATCAAAGTTAGTATTGATACGATATTTCCTGTAATAGAAGTCCACCCAAATCGTCAACTTTGAGTCAATTTATCTCAATTTCTGTGAAAGATATAAGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTGTCATGTTTTTGATATCTTTCACATGAATAGAGATAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTCTAGTAGATACAGTTTTTCGAATTTCTGATTTTCCCAGCGCTACCGCCTCGAACAACGCAAACAACGACCGAAACAAGTTCGAATGGATGATTTCCTGTTTAAAGCGCGAAGAGTTGATAAAGGAGCCAGAGAATTCGGACTGCACACCACTCACGAACCAAAAAGAGGCAGTAAAAAAAAGAGGGATTCGATTGAAATGCTAGAAGTAAAAAAAGCGGATTACGAAAGGGTGAAACAGAAGAAGAGAGACGAAGTGATCGAGAAAAGGAAAGCGGAAGTGGATGAACTGGATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGCTGTCGCAATGTATCAAAAATAACCAAATTCTTCGAAAAAGACGCTGCGAGACCTTCATTTCAATCTCCAAAAAGATCGAGCAATTCGGAATCATATGCAAGCGATAGTTTTTTAAATGACACATATTCTACGCCAATAAAGGAAACTGTCCCTGAAACCTATTCAACGCCAACGTCTTCTAAAATCAGAAAGTGCTCGGAGCGAACCACATTTTTCGATAAAGGACCTTCTACTTCTTCAGCTGCACTTTTCCAATCCCCAGCGAGAAAAATCACAATCAACGATCCGAATTCGTACTACTCCAGCGAAACGGTCCTAGACGACACTTTATGCTCAACTCCAAATAGATCTTCACTTGTGGAAACAGTTCCTTTTCCT</canonical>
            <polymorphic>ATTATCTTCAAAAACTAAAACCCATGATGATGGTCCGTTATTGCAAGAAGACTTTTTATCACCAGACAACATCAAAGTTAGTATTGATACGATATTTCCTGTAATAGAAGTCCACCCAAATCGTCAACTTTGAGTCAATTTATCTCAATTTCTGTGAAAGATATAAGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTGTCATGTTTTTGATATCTTTCACATGAATAGAGATAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTCTAGTAGATACAGTTTTTCGAATTTCTGATTTTCCCAGCGCTACCGCCTCGAACAACGCAAACAACGACCGAAACAAGTTCGAATGGATGATTTCCTGTTTAAAGCGCGAAGAGTTGATAAAGGAGCCAGAGAATTCGGACTGCACACCACTCACGAACCAAAAAGAGGCAGTAAAAAAAAGAGGGATTCGATTGAAATGCTAGAAGTARAAAAAGCGGATTACGAAAGGGTGAAACAGAAGAAGAGAGACGAAGTGATCGAGAAAAGGAAAGCGGAAGTGGATGAACTGGATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGCTGTCGCAATGTATCAAAAATAACCAAATTCTTCGAAAAAGACGCTGCGAGACCTTCATTTCAATCTCCAAAAAGATCGAGCAATTCGGAATCATATGCAAGCGATAGTTTTTTAAATGACACATATTCTACGCCAATAAAGGAAACTGTCCCTGAAACCTATTCAACGCCAACGTCTTCTAAAATCAGAAAGTGCTCGGAGCGAACCACATTTTTCGATAAAGGACCTTCTACTTCTTCAGCTGCACTTTTCCAATCCCCAGCGAGAAAAATCACAATCAACGATCCGAATTCGTACTACTCCAGCGAAACGGTCCTAGACGACACTTTATGCTCAACTCCAAATAGATCTTCACTTGTGGAAACAGTTCCTTTTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTTTCGAATTTCTGATTT</pcr_primer_p1>
		<pcr_primer_p2>CGATCACTTCGTCTCTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTTTCGAATTTCTGATTTTCCCAGCGCTACCGCCTCGAACAACGCAAACAACGACCGAAACAAGTTCGAATGGATGATTTCCTGTTTAAAGCGCGAAGAGTTGATAAAGGAGCCAGAGAATTCGGACTGCACACCACTCACGAACCAAAAAGAGGCAGTAAAAAAAAGAGGGATTCGATTGAAATGCTAGAAGTAAAAAAAGCGGATTACGAAAGGGTGAAACAGAAGAAGAGAGACGAAGTGATCG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTTTCGAATTTCTGATTTTCCCAGCGCTACCGCCTCGAACAACGCAAACAACGACCGAAACAAGTTCGAATGGATGATTTCCTGTTTAAAGCGCGAAGAGTTGATAAAGGAGCCAGAGAATTCGGACTGCACACCACTCACGAACCAAAAAGAGGCAGTAAAAAAAAGAGGGATTCGATTGAAATGCTAGAAGTARAAAAAGCGGATTACGAAAGGGTGAAACAGAAGAAGAGAGACGAAGTGATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8060</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>333676</contig_pos>
        <strand></strand>
        <context>TTCTGATTTT[C/T]CCAGCGCTAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGGTTTGGGTAGGCTTCTAGTAGATACAGTTTTTCGAATTTCTGATTTT</left_flank>
        <right_flank>CCAGCGCTACCGCCTCGAACAACGCAAACAACGACCGAAACAAGTTCGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCTGGCATCCAACAGTTACGACGATTCATCCATTCTGGCAGCAGTTTCATCTACTCATTCGTCGCAAGAAGCGGGAAGTTCACAGCCGGAAGTAACTTCCACGTCTCAAAAACACAAGTTGAAGAAGCCAAAACCTAAATCAGAAAATAATGGATTTGCATCCATCTTCAATACATTATCTTCAAAAACTAAAACCCATGATGATGGTCCGTTATTGCAAGAAGACTTTTTATCACCAGACAACATCAAAGTTAGTATTGATACGATATTTCCTGTAATAGAAGTCCACCCAAATCGTCAACTTTGAGTCAATTTATCTCAATTTCTGTGAAAGATATAAGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTGTCATGTTTTTGATATCTTTCACATGAATAGAGATAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTCTAGTAGATACAGTTTTTCGAATTTCTGATTTTCCCAGCGCTACCGCCTCGAACAACGCAAACAACGACCGAAACAAGTTCGAATGGATGATTTCCTGTTTAAAGCGCGAAGAGTTGATAAAGGAGCCAGAGAATTCGGACTGCACACCACTCACGAACCAAAAAGAGGCAGTAAAAAAAAGAGGGATTCGATTGAAATGCTAGAAGTAAAAAAAGCGGATTACGAAAGGGTGAAACAGAAGAAGAGAGACGAAGTGATCGAGAAAAGGAAAGCGGAAGTGGATGAACTGGATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGCTGTCGCAATGTATCAAAAATAACCAAATTCTTCGAAAAAGACGCTGCGAGACCTTCATTTCAATCTCCAAAAAGATCGAGCAATTCGGAATCATATGCAAGCGATAGTTTTTTAAATGACACATATTCTACGCCAATAAAGGAAACTGTCCCTGAAACCTATTCAACGCCAACGTCTTCTAAAATCAGAAAGTGCTCGGAGC</canonical>
            <polymorphic>GTTCTGGCATCCAACAGTTACGACGATTCATCCATTCTGGCAGCAGTTTCATCTACTCATTCGTCGCAAGAAGCGGGAAGTTCACAGCCGGAAGTAACTTCCACGTCTCAAAAACACAAGTTGAAGAAGCCAAAACCTAAATCAGAAAATAATGGATTTGCATCCATCTTCAATACATTATCTTCAAAAACTAAAACCCATGATGATGGTCCGTTATTGCAAGAAGACTTTTTATCACCAGACAACATCAAAGTTAGTATTGATACGATATTTCCTGTAATAGAAGTCCACCCAAATCGTCAACTTTGAGTCAATTTATCTCAATTTCTGTGAAAGATATAAGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTGTCATGTTTTTGATATCTTTCACATGAATAGAGATAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTCTAGTAGATACAGTTTTTCGAATTTCTGATTTTYCCAGCGCTACCGCCTCGAACAACGCAAACAACGACCGAAACAAGTTCGAATGGATGATTTCCTGTTTAAAGCGCGAAGAGTTGATAAAGGAGCCAGAGAATTCGGACTGCACACCACTCACGAACCAAAAAGAGGCAGTAAAAAAAAGAGGGATTCGATTGAAATGCTAGAAGTAAAAAAAGCGGATTACGAAAGGGTGAAACAGAAGAAGAGAGACGAAGTGATCGAGAAAAGGAAAGCGGAAGTGGATGAACTGGATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGCTGTCGCAATGTATCAAAAATAACCAAATTCTTCGAAAAAGACGCTGCGAGACCTTCATTTCAATCTCCAAAAAGATCGAGCAATTCGGAATCATATGCAAGCGATAGTTTTTTAAATGACACATATTCTACGCCAATAAAGGAAACTGTCCCTGAAACCTATTCAACGCCAACGTCTTCTAAAATCAGAAAGTGCTCGGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGACAACATCAAAGTTAGTATT</pcr_primer_p1>
		<pcr_primer_p2>CATCCATTCGAACTTGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>319</pcr_amplicon_size>
		<canonical_amplicon>CCAGACAACATCAAAGTTAGTATTGATACGATATTTCCTGTAATAGAAGTCCACCCAAATCGTCAACTTTGAGTCAATTTATCTCAATTTCTGTGAAAGATATAAGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTGTCATGTTTTTGATATCTTTCACATGAATAGAGATAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTCTAGTAGATACAGTTTTTCGAATTTCTGATTTTCCCAGCGCTACCGCCTCGAACAACGCAAACAACGACCGAAACAAGTTCGAATGGATG</canonical_amplicon>
		<polymorphic_amplicon>CCAGACAACATCAAAGTTAGTATTGATACGATATTTCCTGTAATAGAAGTCCACCCAAATCGTCAACTTTGAGTCAATTTATCTCAATTTCTGTGAAAGATATAAGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTGTCATGTTTTTGATATCTTTCACATGAATAGAGATAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTCTAGTAGATACAGTTTTTCGAATTTCTGATTTTYCCAGCGCTACCGCCTCGAACAACGCAAACAACGACCGAAACAAGTTCGAATGGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8061</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>347746</contig_pos>
        <strand>+</strand>
        <context>MGAAATTCAA[C/T]GTTGTTATTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGCTCCTCCCACTTTTCTCAACCATTTTCTGAATCCTAGAAATTCAA</left_flank>
        <right_flank>GTTGTTATTGTGTTGTCCTTTTTCTTCTTCTATTCTGCCTTTCTTCGCTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGAATCTGGGCTCTTGATTCGGAGGGTATACACAATTCGGGGGATCAAAATTTGGATTTTCAGGTATTTTGTACCGCCGAATGGAGGATTTCATACCCCCAAATTGCCCAATGACCCAAAAATTTTTGTACGAATAAATTTCCCAAAATCTGACCGTTGCCCGTTTTACAGCTGTTTTTGGGCAAGTTCAGACCAGAACCTGACCAATATCCGTACAAAAGACCTCAACTTCTGACCAGAAGTTACAATTTCTTCTAATCTTTTTTGAAAGATTACCTTCTTTTTTTTTAAATTTCCCCTTAAAAAAACTAATTTCCCGACTCCAATAGAAAGACCACCTGATAAAACTGTCTGATCACCTATCTCAGTTTATTTTTCTTCTTCCTGTTTGCTCTTGATTATTTTCTTATTTAACTCCTTTCAAATAATATGACTTTCTATTATTTTTTTTTGCTCCTCCCACTTTTCTCAACCATTTTCTGAATCCTAGAAATTCAACGTTGTTATTGTGTTGTCCTTTTTCTTCTTCTATTCTGCCTTTCTTCGCTTCAATGTCTCCCGGCTGTTTCTGAAAGCAAACACTGTAAGAGAAAATAGTGTAGAAAATCGAGAGGCATTCAAAGAAACAGAGAAACACAACAAATATTACGAATTTCGCATTTTGGCGAGAAAGAAAGAGGACTCCGGGGATGGAAAAGTGAGGTAAAGTCTGTTGGTTGTATGCACATGAGAACTGCGGGGAATACGCATGATTCATACATCATACGTTCTATGTATGTCTCCTGTTGCTCTTTTTTCATATTTCTTTTGTTTTCCATTGTTTCTGAGAATCTTTTAATCTGGATTTTTAAATTTCTATTTTGCGATTTGAATTCCTCCTCACATCACAAGTCAGATTTTTTCCTTTCTGTATGAACTCACGAATTCGGAAAATATTTCTGTCTAAACTGGAAAACCATGAAACATTCTTTTAGGTTCGTTTCTTAGGTTCGTTTCTTA</canonical>
            <polymorphic>ACGAATCTGGGCTCTTGATTCGGAGGGTATACACAATTCGGGGGATCAAAATTTGGATTTTCAGGTATTTTGTACCGCCGAATGGAGGATTTCATACCCCCAAATTGCCCAATGACCCAAAAATTTTTGTACGAATAAATTTCCCAAAATCTGACCGTTGCCCGTTTTACAGCTGTTTTTGGGCAAGTTCAGACCAGAACCTGACCAATATCCGTACAAAAGACCTCAACTTCTGACCAGAAGTTACAATTTCTTCTAATCTTTTTTGAAAGATTACCTTCTTTTTTTTTAAATTTCCCCTTAAAAAAACTAATTTCCCGACTCCAATAGAAAGACCACCTGATAAAACTGTCTGATCACCTATCTCAGTTTATTTTTCTTCTTCCTGTTTGCTCTTGATTATTTTCTTATTTAACTCCTTTCAAATAATATGACTTTCTATTATTTTTTTTTGCTCCTCCCACTTTTCTCAACCATTTTCTGAATCCTAGAAATTCAAYGTTGTTATTGTGTTGTCCTTTTTCTTCTTCTATTCTGCCTTTCTTCGCTTCAATGTCTCCCGGCTGTTTCTGAAAGCAAACACTGTAAGAGAAAATAGTGTAGAAAATCGAGAGGCATTCAAAGAAACAGAGAAACACAACAAATATTACGAATTTCGCATTTTGGCGAGAAAGAAAGAGGACTCCGGGGATGGAAAAGTGAGGTAAAGTCTGTTGGTTGTATGCACATGAGAACTGCGGGGAATACGCATGATTCATACATCATACGTTCTATGTATGTCTCCTGTTGCTCTTTTTTCATATTTCTTTTGTTTTCCATTGTTTCTGAGAATCTTTTAATCTGGATTTTTAAATTTCTATTTTGCGATTTGAATTCCTCCTCACATCACAAGTCAGATTTTTTCCTTTCTGTATGAACTCACGAATTCGGAAAATATTTCTGTCTAAACTGGAAAACCATGAAACATTCTTTTAGGTTCGTTTCTTAGGTTCGTTTCTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>499 267 234</canonical_bands>
                <polymorphic_bands>766 234</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTGTCTGATCACCTATCTCA</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCTTACAGTGTTTGCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAACTGTCTGATCACCTATCTCAGTTTATTTTTCTTCTTCCTGTTTGCTCTTGATTATTTTCTTATTTAACTCCTTTCAAATAATATGACTTTCTATTATTTTTTTTTGCTCCTCCCACTTTTCTCAACCATTTTCTGAATCCTAGAAATTCAACGTTGTTATTGTGTTGTCCTTTTTCTTCTTCTATTCTGCCTTTCTTCGCTTCAATGTCTCCCGGCTGTTTCTGAAAGCAAACACTGTAAGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>AAACTGTCTGATCACCTATCTCAGTTTATTTTTCTTCTTCCTGTTTGCTCTTGATTATTTTCTTATTTAACTCCTTTCAAATAATATGACTTTCTATTATTTTTTTTTGCTCCTCCCACTTTTCTCAACCATTTTCTGAATCCTAGAAATTCAAYGTTGTTATTGTGTTGTCCTTTTTCTTCTTCTATTCTGCCTTTCTTCGCTTCAATGTCTCCCGGCTGTTTCTGAAAGCAAACACTGTAAGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8062</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>347935</contig_pos>
        <strand>+</strand>
        <context>AGGACTCCGG[A/G]GATGGAAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACAAATATTACGAATTTCGCATTTTGGCGAGAAAGAAAGAGGACTCCGG</left_flank>
        <right_flank>GATGGAAAAGTGAGGTAAAGTCTGTTGGTTGTATGCACATGAGAACTGCG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGACCAGAACCTGACCAATATCCGTACAAAAGACCTCAACTTCTGACCAGAAGTTACAATTTCTTCTAATCTTTTTTGAAAGATTACCTTCTTTTTTTTTAAATTTCCCCTTAAAAAAACTAATTTCCCGACTCCAATAGAAAGACCACCTGATAAAACTGTCTGATCACCTATCTCAGTTTATTTTTCTTCTTCCTGTTTGCTCTTGATTATTTTCTTATTTAACTCCTTTCAAATAATATGACTTTCTATTATTTTTTTTTGCTCCTCCCACTTTTCTCAACCATTTTCTGAATCCTAGAAATTCAACGTTGTTATTGTGTTGTCCTTTTTCTTCTTCTATTCTGCCTTTCTTCGCTTCAATGTCTCCCGGCTGTTTCTGAAAGCAAACACTGTAAGAGAAAATAGTGTAGAAAATCGAGAGGCATTCAAAGAAACAGAGAAACACAACAAATATTACGAATTTCGCATTTTGGCGAGAAAGAAAGAGGACTCCGGGGATGGAAAAGTGAGGTAAAGTCTGTTGGTTGTATGCACATGAGAACTGCGGGGAATACGCATGATTCATACATCATACGTTCTATGTATGTCTCCTGTTGCTCTTTTTTCATATTTCTTTTGTTTTCCATTGTTTCTGAGAATCTTTTAATCTGGATTTTTAAATTTCTATTTTGCGATTTGAATTCCTCCTCACATCACAAGTCAGATTTTTTCCTTTCTGTATGAACTCACGAATTCGGAAAATATTTCTGTCTAAACTGGAAAACCATGAAACATTCTTTTAGGTTCGTTTCTTAGGTTCGTTTCTTAGATTCTTGACCCAAACTTTCATTCATGACCTTTCTTCTAGACCACTCAAACCGTCAAGTTTGAGGTCAATTATCTCGGTTGCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTGATATTATGATAAATATTTTATCAGTTGACAACTTTTTAATATCTTTCCCAGAAATTGAGATATA</canonical>
            <polymorphic>CAGACCAGAACCTGACCAATATCCGTACAAAAGACCTCAACTTCTGACCAGAAGTTACAATTTCTTCTAATCTTTTTTGAAAGATTACCTTCTTTTTTTTTAAATTTCCCCTTAAAAAAACTAATTTCCCGACTCCAATAGAAAGACCACCTGATAAAACTGTCTGATCACCTATCTCAGTTTATTTTTCTTCTTCCTGTTTGCTCTTGATTATTTTCTTATTTAACTCCTTTCAAATAATATGACTTTCTATTATTTTTTTTTGCTCCTCCCACTTTTCTCAACCATTTTCTGAATCCTAGAAATTCAACGTTGTTATTGTGTTGTCCTTTTTCTTCTTCTATTCTGCCTTTCTTCGCTTCAATGTCTCCCGGCTGTTTCTGAAAGCAAACACTGTAAGAGAAAATAGTGTAGAAAATCGAGAGGCATTCAAAGAAACAGAGAAACACAACAAATATTACGAATTTCGCATTTTGGCGAGAAAGAAAGAGGACTCCGGRGATGGAAAAGTGAGGTAAAGTCTGTTGGTTGTATGCACATGAGAACTGCGGGGAATACGCATGATTCATACATCATACGTTCTATGTATGTCTCCTGTTGCTCTTTTTTCATATTTCTTTTGTTTTCCATTGTTTCTGAGAATCTTTTAATCTGGATTTTTAAATTTCTATTTTGCGATTTGAATTCCTCCTCACATCACAAGTCAGATTTTTTCCTTTCTGTATGAACTCACGAATTCGGAAAATATTTCTGTCTAAACTGGAAAACCATGAAACATTCTTTTAGGTTCGTTTCTTAGGTTCGTTTCTTAGATTCTTGACCCAAACTTTCATTCATGACCTTTCTTCTAGACCACTCAAACCGTCAAGTTTGAGGTCAATTATCTCGGTTGCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTGATATTATGATAAATATTTTATCAGTTGACAACTTTTTAATATCTTTCCCAGAAATTGAGATATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 371 126</canonical_bands>
                <polymorphic_bands>629 371</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>503 371 126</canonical_bands>
                <polymorphic_bands>629 371</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGCAAACACTGTAAGAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAATGGAAAACAAAAGAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAGCAAACACTGTAAGAGAAAATAGTGTAGAAAATCGAGAGGCATTCAAAGAAACAGAGAAACACAACAAATATTACGAATTTCGCATTTTGGCGAGAAAGAAAGAGGACTCCGGGGATGGAAAAGTGAGGTAAAGTCTGTTGGTTGTATGCACATGAGAACTGCGGGGAATACGCATGATTCATACATCATACGTTCTATGTATGTCTCCTGTTGCTCTTTTTTCATATTTCTTTTGTTTTCCATTG</canonical_amplicon>
		<polymorphic_amplicon>AAAGCAAACACTGTAAGAGAAAATAGTGTAGAAAATCGAGAGGCATTCAAAGAAACAGAGAAACACAACAAATATTACGAATTTCGCATTTTGGCGAGAAAGAAAGAGGACTCCGGRGATGGAAAAGTGAGGTAAAGTCTGTTGGTTGTATGCACATGAGAACTGCGGGGAATACGCATGATTCATACATCATACGTTCTATGTATGTCTCCTGTTGCTCTTTTTTCATATTTCTTTTGTTTTCCATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8063</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>351562</contig_pos>
        <strand>+</strand>
        <context>ATTCGATGTC[A/T]TCTAGATTac</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGATATTATACAGGTAAGGTGAAATTGCAGAAAAAAGGAAATTCGATGTC</left_flank>
        <right_flank>TCTAGATTACTGTAAACACACTAATAGAACGACCCGTATTTCTTTGAACT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCACTGGCGTCACTTCTTCTGATGGGGTGGCAAACAGGCGTTCTCAATCACTGTCGCGCCGTCACAATGGCACAATCCAATTTACAATGTGAATGGGATTGTCCGTGTGTCGGAGCATCCACTAAACGTACCGCGTCAATCATAGAAGGCAAGTTTTAGTTAGAAAGTTTCTAGAAAAATAGGACATCAAAGCGTTTGCCGTTAGCCTGTTTGCCACCCCATTCTCGTATATTTGTGTGTCTTTCTTTTTGAGTTTTTTAACGATTTATTAAAAATCCCTGGTTTCCAGGTGTCCTCGATAGGCCAATTAGGGATAATGGGGTGGCAAATGGCGGCGATCAAATACGAGAGAGATCGAGCGGCAAACACTTTGTTACCAAATTATAATACTTATGGAAGATTTGATGTTCCTTCGTATTTTGAAAGTTATTGGCAGACTCCTGAAGAGAGATATTATACAGGTAAGGTGAAATTGCAGAAAAAAGGAAATTCGATGTCTTCTAGATTACTGTAAACACACTAATAGAACGACCCGTATTTCTTTGAACTTTGAGTCAATTTATCTCATTTCCTGTAGAAGATATCAAAAAGTAGTCGAATGACACAACATTTATCATAAGATAAAAAACGATGTACTAGTTGACTACTTTTTGATACCTTATACAGGAACCGAGATAAATTGGCTCAAAGTTAAGATGTCGTCAGCCGACCACCTTTCTCGGTCGGCATGCGCCGACTTGACAGTTTTGAGCCTATTTATCTCATTTGCTGTGGAAGATATAATAAAGTAGTCAACAGATAAAATGTTCAACATAATATCACAAACATTTTATCAGTTGATCACTTTTTGATATCTCTTACAGAAAATGAGATATATGTGCTTAAAGTTAAAGGTCTGGGGGACACGGTATTTTTTGAGCCAATTCAATCCCTTCCAAATCCAATTTCAGAAATAATTTCTTCAAAAATCATGTTATGTGCATTCGAAAAAGTTTATTT</canonical>
            <polymorphic>TGCACTGGCGTCACTTCTTCTGATGGGGTGGCAAACAGGCGTTCTCAATCACTGTCGCGCCGTCACAATGGCACAATCCAATTTACAATGTGAATGGGATTGTCCGTGTGTCGGAGCATCCACTAAACGTACCGCGTCAATCATAGAAGGCAAGTTTTAGTTAGAAAGTTTCTAGAAAAATAGGACATCAAAGCGTTTGCCGTTAGCCTGTTTGCCACCCCATTCTCGTATATTTGTGTGTCTTTCTTTTTGAGTTTTTTAACGATTTATTAAAAATCCCTGGTTTCCAGGTGTCCTCGATAGGCCAATTAGGGATAATGGGGTGGCAAATGGCGGCGATCAAATACGAGAGAGATCGAGCGGCAAACACTTTGTTACCAAATTATAATACTTATGGAAGATTTGATGTTCCTTCGTATTTTGAAAGTTATTGGCAGACTCCTGAAGAGAGATATTATACAGGTAAGGTGAAATTGCAGAAAAAAGGAAATTCGATGTCWTCTAGATTACTGTAAACACACTAATAGAACGACCCGTATTTCTTTGAACTTTGAGTCAATTTATCTCATTTCCTGTAGAAGATATCAAAAAGTAGTCGAATGACACAACATTTATCATAAGATAAAAAACGATGTACTAGTTGACTACTTTTTGATACCTTATACAGGAACCGAGATAAATTGGCTCAAAGTTAAGATGTCGTCAGCCGACCACCTTTCTCGGTCGGCATGCGCCGACTTGACAGTTTTGAGCCTATTTATCTCATTTGCTGTGGAAGATATAATAAAGTAGTCAACAGATAAAATGTTCAACATAATATCACAAACATTTTATCAGTTGATCACTTTTTGATATCTCTTACAGAAAATGAGATATATGTGCTTAAAGTTAAAGGTCTGGGGGACACGGTATTTTTTGAGCCAATTCAATCCCTTCCAAATCCAATTTCAGAAATAATTTCTTCAAAAATCATGTTATGTGCATTCGAAAAAGTTTATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGAGAGATATTATACAGGTAAGG</pcr_primer_p1>
		<pcr_primer_p2>GCACATAACATGATTTTTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>540</pcr_amplicon_size>
		<canonical_amplicon>TGAAGAGAGATATTATACAGGTAAGGTGAAATTGCAGAAAAAAGGAAATTCGATGTCTTCTAGATTACTGTAAACACACTAATAGAACGACCCGTATTTCTTTGAACTTTGAGTCAATTTATCTCATTTCCTGTAGAAGATATCAAAAAGTAGTCGAATGACACAACATTTATCATAAGATAAAAAACGATGTACTAGTTGACTACTTTTTGATACCTTATACAGGAACCGAGATAAATTGGCTCAAAGTTAAGATGTCGTCAGCCGACCACCTTTCTCGGTCGGCATGCGCCGACTTGACAGTTTTGAGCCTATTTATCTCATTTGCTGTGGAAGATATAATAAAGTAGTCAACAGATAAAATGTTCAACATAATATCACAAACATTTTATCAGTTGATCACTTTTTGATATCTCTTACAGAAAATGAGATATATGTGCTTAAAGTTAAAGGTCTGGGGGACACGGTATTTTTTGAGCCAATTCAATCCCTTCCAAATCCAATTTCAGAAATAATTTCTTCAAAAATCATGTTATGTGC</canonical_amplicon>
		<polymorphic_amplicon>TGAAGAGAGATATTATACAGGTAAGGTGAAATTGCAGAAAAAAGGAAATTCGATGTCWTCTAGATTACTGTAAACACACTAATAGAACGACCCGTATTTCTTTGAACTTTGAGTCAATTTATCTCATTTCCTGTAGAAGATATCAAAAAGTAGTCGAATGACACAACATTTATCATAAGATAAAAAACGATGTACTAGTTGACTACTTTTTGATACCTTATACAGGAACCGAGATAAATTGGCTCAAAGTTAAGATGTCGTCAGCCGACCACCTTTCTCGGTCGGCATGCGCCGACTTGACAGTTTTGAGCCTATTTATCTCATTTGCTGTGGAAGATATAATAAAGTAGTCAACAGATAAAATGTTCAACATAATATCACAAACATTTTATCAGTTGATCACTTTTTGATATCTCTTACAGAAAATGAGATATATGTGCTTAAAGTTAAAGGTCTGGGGGACACGGTATTTTTTGAGCCAATTCAATCCCTTCCAAATCCAATTTCAGAAATAATTTCTTCAAAAATCATGTTATGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8064</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>351777</contig_pos>
        <strand>+</strand>
        <context>AGCCGACCAC[C/G]TTTCTCGGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAGGAACCGAGATAAATTGGCTCAAAGTTAAGATGTCGTCAGCCGACCAC</left_flank>
        <right_flank>TTTCTCGGTCGGCATGCGCCGACTTGACAGTTTTGAGCCTATTTATCTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACCCCATTCTCGTATATTTGTGTGTCTTTCTTTTTGAGTTTTTTAACGATTTATTAAAAATCCCTGGTTTCCAGGTGTCCTCGATAGGCCAATTAGGGATAATGGGGTGGCAAATGGCGGCGATCAAATACGAGAGAGATCGAGCGGCAAACACTTTGTTACCAAATTATAATACTTATGGAAGATTTGATGTTCCTTCGTATTTTGAAAGTTATTGGCAGACTCCTGAAGAGAGATATTATACAGGTAAGGTGAAATTGCAGAAAAAAGGAAATTCGATGTCTTCTAGATTACTGTAAACACACTAATAGAACGACCCGTATTTCTTTGAACTTTGAGTCAATTTATCTCATTTCCTGTAGAAGATATCAAAAAGTAGTCGAATGACACAACATTTATCATAAGATAAAAAACGATGTACTAGTTGACTACTTTTTGATACCTTATACAGGAACCGAGATAAATTGGCTCAAAGTTAAGATGTCGTCAGCCGACCACCTTTCTCGGTCGGCATGCGCCGACTTGACAGTTTTGAGCCTATTTATCTCATTTGCTGTGGAAGATATAATAAAGTAGTCAACAGATAAAATGTTCAACATAATATCACAAACATTTTATCAGTTGATCACTTTTTGATATCTCTTACAGAAAATGAGATATATGTGCTTAAAGTTAAAGGTCTGGGGGACACGGTATTTTTTGAGCCAATTCAATCCCTTCCAAATCCAATTTCAGAAATAATTTCTTCAAAAATCATGTTATGTGCATTCGAAAAAGTTTATTTGAAGGCATATAAAAATATTCAATTCTGCCAGAAACTAGAGAAAACATTCTGAAAATTCAAAAACTTCAATCTTTTGAAATCTATCTATAAGTTGGATGTGATTTCTAAAAAACGTCAATTTTAAAATTCTGTCAAAATTTTCAGCAAGATTTTAAAAAATCTTTCTGAAAGTCGTGGCATGTTTTTTATCTGTCAAAGACTAAACATTCTGAAAT</canonical>
            <polymorphic>CACCCCATTCTCGTATATTTGTGTGTCTTTCTTTTTGAGTTTTTTAACGATTTATTAAAAATCCCTGGTTTCCAGGTGTCCTCGATAGGCCAATTAGGGATAATGGGGTGGCAAATGGCGGCGATCAAATACGAGAGAGATCGAGCGGCAAACACTTTGTTACCAAATTATAATACTTATGGAAGATTTGATGTTCCTTCGTATTTTGAAAGTTATTGGCAGACTCCTGAAGAGAGATATTATACAGGTAAGGTGAAATTGCAGAAAAAAGGAAATTCGATGTCTTCTAGATTACTGTAAACACACTAATAGAACGACCCGTATTTCTTTGAACTTTGAGTCAATTTATCTCATTTCCTGTAGAAGATATCAAAAAGTAGTCGAATGACACAACATTTATCATAAGATAAAAAACGATGTACTAGTTGACTACTTTTTGATACCTTATACAGGAACCGAGATAAATTGGCTCAAAGTTAAGATGTCGTCAGCCGACCACSTTTCTCGGTCGGCATGCGCCGACTTGACAGTTTTGAGCCTATTTATCTCATTTGCTGTGGAAGATATAATAAAGTAGTCAACAGATAAAATGTTCAACATAATATCACAAACATTTTATCAGTTGATCACTTTTTGATATCTCTTACAGAAAATGAGATATATGTGCTTAAAGTTAAAGGTCTGGGGGACACGGTATTTTTTGAGCCAATTCAATCCCTTCCAAATCCAATTTCAGAAATAATTTCTTCAAAAATCATGTTATGTGCATTCGAAAAAGTTTATTTGAAGGCATATAAAAATATTCAATTCTGCCAGAAACTAGAGAAAACATTCTGAAAATTCAAAAACTTCAATCTTTTGAAATCTATCTATAAGTTGGATGTGATTTCTAAAAAACGTCAATTTTAAAATTCTGTCAAAATTTTCAGCAAGATTTTAAAAAATCTTTCTGAAAGTCGTGGCATGTTTTTTATCTGTCAAAGACTAAACATTCTGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGGTGAAATTGCAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GCACATAACATGATTTTTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>519</pcr_amplicon_size>
		<canonical_amplicon>TAAGGTGAAATTGCAGAAAAAAGGAAATTCGATGTCTTCTAGATTACTGTAAACACACTAATAGAACGACCCGTATTTCTTTGAACTTTGAGTCAATTTATCTCATTTCCTGTAGAAGATATCAAAAAGTAGTCGAATGACACAACATTTATCATAAGATAAAAAACGATGTACTAGTTGACTACTTTTTGATACCTTATACAGGAACCGAGATAAATTGGCTCAAAGTTAAGATGTCGTCAGCCGACCACCTTTCTCGGTCGGCATGCGCCGACTTGACAGTTTTGAGCCTATTTATCTCATTTGCTGTGGAAGATATAATAAAGTAGTCAACAGATAAAATGTTCAACATAATATCACAAACATTTTATCAGTTGATCACTTTTTGATATCTCTTACAGAAAATGAGATATATGTGCTTAAAGTTAAAGGTCTGGGGGACACGGTATTTTTTGAGCCAATTCAATCCCTTCCAAATCCAATTTCAGAAATAATTTCTTCAAAAATCATGTTATGTGC</canonical_amplicon>
		<polymorphic_amplicon>TAAGGTGAAATTGCAGAAAAAAGGAAATTCGATGTCTTCTAGATTACTGTAAACACACTAATAGAACGACCCGTATTTCTTTGAACTTTGAGTCAATTTATCTCATTTCCTGTAGAAGATATCAAAAAGTAGTCGAATGACACAACATTTATCATAAGATAAAAAACGATGTACTAGTTGACTACTTTTTGATACCTTATACAGGAACCGAGATAAATTGGCTCAAAGTTAAGATGTCGTCAGCCGACCACSTTTCTCGGTCGGCATGCGCCGACTTGACAGTTTTGAGCCTATTTATCTCATTTGCTGTGGAAGATATAATAAAGTAGTCAACAGATAAAATGTTCAACATAATATCACAAACATTTTATCAGTTGATCACTTTTTGATATCTCTTACAGAAAATGAGATATATGTGCTTAAAGTTAAAGGTCTGGGGGACACGGTATTTTTTGAGCCAATTCAATCCCTTCCAAATCCAATTTCAGAAATAATTTCTTCAAAAATCATGTTATGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8065</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>392592</contig_pos>
        <strand>+</strand>
        <context>TGTTACAATG[C/T]TAACGGAGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTTTAGGGTCAAAGTTCGCGATTTGGATGAGCTTACAACTGTTACAATG</left_flank>
        <right_flank>TAACGGAGATTGAAACTGACAAAAGTAATCAAAGTTTTGAAGATTCTTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGACGACAAACGGGGAGCCCACAAAGATGGATTACGGTTCCGTGAATAGAAAAGGAGGAGGCGGACAGACGATGGTGATAAAACTGTTAATTAGAATCGGTAATTGATGAATGAGTAATTTAGGTGAGCGTTGTCATTGGGAAACGGATTCTGATGCTTACAAATGTGACTAACCTTGACGAGCCAGTCAATCTTCAATTCCAAGAAAAATATGGAGTTATTCATACGTATAAGTGGTTCAATGATGGGTACATTCTGATTGGATTCGACTGCGGATACATTATTTCCATATCAGCTCATCGAGTTGAAATTGGCTCTGAGCTCGTCAGTTTTCTCGAGTATCGAGGATATCTTGCTTCGCTTGCCGTGAGCACTTCATTCAACAAGTTGCTGACAATTGGAGACAATATGTAACACTGAACTGTGTACGACTAAAAAAGAATTATCAAGTTTAGGGTCAAAGTTCGCGATTTGGATGAGCTTACAACTGTTACAATGCTAACGGAGATTGAAACTGACAAAAGTAATCAAAGTTTTGAAGATTCTTTTTCAATAAACTGTTTTCACAGACCTCAGTGAAATTGAAGTCACAGAAGATGGTCAATTGGTTGCTGTGTCTTCTCAATCCGGGGTTCTATCAGTGTTCGTCACAAAGATGCCAACGCTTGCTGCATCTTACAACAATGCGATCTGTTATCTTACGAATCTGACCCAAGTCACCGTGGTTGCAGAAGTGGAAAAGAAAGGATCTTCCACATTGGAACTTGGCATTGAGCCGACGGTCATGGGATTAGGACCAGTGAATCTTGCAGTTGCTAATAACAATGCTGTATTCTTTTACGATTACACAAGTCCAGCTCAAATGCAAGCTGCTCAGAATCTTCAGTCCTCGCAGGTTGCTGTGGAAAAACGTAAAAAGATGGGGGAATTATCTGAAACTATTAAAATTGTTTCAGCATCAATTATGAATGCCGAGCCAATAAATCGAGTAGAATATTT</canonical>
            <polymorphic>GCGACGACAAACGGGGAGCCCACAAAGATGGATTACGGTTCCGTGAATAGAAAAGGAGGAGGCGGACAGACGATGGTGATAAAACTGTTAATTAGAATCGGTAATTGATGAATGAGTAATTTAGGTGAGCGTTGTCATTGGGAAACGGATTCTGATGCTTACAAATGTGACTAACCTTGACGAGCCAGTCAATCTTCAATTCCAAGAAAAATATGGAGTTATTCATACGTATAAGTGGTTCAATGATGGGTACATTCTGATTGGATTCGACTGCGGATACATTATTTCCATATCAGCTCATCGAGTTGAAATTGGCTCTGAGCTCGTCAGTTTTCTCGAGTATCGAGGATATCTTGCTTCGCTTGCCGTGAGCACTTCATTCAACAAGTTGCTGACAATTGGAGACAATATGTAACACTGAACTGTGTACGACTAAAAAAGAATTATCAAGTTTAGGGTCAAAGTTCGCGATTTGGATGAGCTTACAACTGTTACAATGYTAACGGAGATTGAAACTGACAAAAGTAATCAAAGTTTTGAAGATTCTTTTTCAATAAACTGTTTTCACAGACCTCAGTGAAATTGAAGTCACAGAAGATGGTCAATTGGTTGCTGTGTCTTCTCAATCCGGGGTTCTATCAGTGTTCGTCACAAAGATGCCAACGCTTGCTGCATCTTACAACAATGCGATCTGTTATCTTACGAATCTGACCCAAGTCACCGTGGTTGCAGAAGTGGAAAAGAAAGGATCTTCCACATTGGAACTTGGCATTGAGCCGACGGTCATGGGATTAGGACCAGTGAATCTTGCAGTTGCTAATAACAATGCTGTATTCTTTTACGATTACACAAGTCCAGCTCAAATGCAAGCTGCTCAGAATCTTCAGTCCTCGCAGGTTGCTGTGGAAAAACGTAAAAAGATGGGGGAATTATCTGAAACTATTAAAATTGTTTCAGCATCAATTATGAATGCCGAGCCAATAAATCGAGTAGAATATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGTCAGTTTTCTCGAGTATC</pcr_primer_p1>
		<pcr_primer_p2>AGGTCTGTGAAAACAGTTTATTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTCGTCAGTTTTCTCGAGTATCGAGGATATCTTGCTTCGCTTGCCGTGAGCACTTCATTCAACAAGTTGCTGACAATTGGAGACAATATGTAACACTGAACTGTGTACGACTAAAAAAGAATTATCAAGTTTAGGGTCAAAGTTCGCGATTTGGATGAGCTTACAACTGTTACAATGCTAACGGAGATTGAAACTGACAAAAGTAATCAAAGTTTTGAAGATTCTTTTTCAATAAACTGTTTTCACAGACCT</canonical_amplicon>
		<polymorphic_amplicon>CTCGTCAGTTTTCTCGAGTATCGAGGATATCTTGCTTCGCTTGCCGTGAGCACTTCATTCAACAAGTTGCTGACAATTGGAGACAATATGTAACACTGAACTGTGTACGACTAAAAAAGAATTATCAAGTTTAGGGTCAAAGTTCGCGATTTGGATGAGCTTACAACTGTTACAATGYTAACGGAGATTGAAACTGACAAAAGTAATCAAAGTTTTGAAGATTCTTTTTCAATAAACTGTTTTCACAGACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8071</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>585235</contig_pos>
        <strand>+</strand>
        <context>ATGACAACGA[A/G]ATGAACAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATTATTTGAATTTATTGTTTATTTATTACTAAACACGAATGACAACGA</left_flank>
        <right_flank>ATGAACAAGAAATTGCAAAATAATAATATAATAATATAAAGAGACCCGAC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTTGGTCAGATTCCGGCAAAGACCCCCCCTCAAAATCAAGTGAAAAACGCGTTTTTGTATTCTTATTAACCGGTACTGTAGAATCCTTTCTATTGTAGCCTCGCCGAGAATTCTGTTCTACAGTATCCGTAGTTTTTATATGTTGAGTTACTCTGCAAAACCATTGTATTCTTCTCCTCAACTTCATCTCTTTGATCCTGTGACGTAATGTGTAAAATCTAAAACACAAAACTCCCACACACTGCACCCACTGGCTTACAATTCTTCACCTTAATTTCGTCCATTCATCTCAGTTTCCCATATCAGTTTGTCTATGAAATACGACCCTGATAACCTGTTTATCTCCTTTTTTCCTCCTCTTTAAAGAACAAAATTGTTGTATATTACACTAAAAAATGCTTCTGGGTTGATTCTGCAAAATTAGAAGAAGAAGCCTATTTTGATGAACAATTATTTGAATTTATTGTTTATTTATTACTAAACACGAATGACAACGAAATGAACAAGAAATTGCAAAATAATAATATAATAATATAAAGAGACCCGACTGAGAAATTAATAAAAACAAAATGGAGAATTAAACATGAACTTCCTGGGTCCTCCCTGTTAGTATGGACCATAACGACTGCCAACTTTCCATAGACGCCAAAGCTCCGAAATCGATAAATCTGAAGAATTCGATACTGCTAAAATTTTTGAATGTTAATCTCGAAATTCGAAATTTCAAAAGTTTGTAGTTCTGATAGTCAGAGATTCTCTAGAAAAACAAAGGCTTCTGAAGTTCTGTGTTTTTGGAATTACAGAGAAATAAGTATCTTAAAAAATTATGTTTAAAATGTGGAAATTTTCGCTGATATTTGGGAATCTCAGTACTTTTTTAATGGAATAGTTTTCAAAATGGGTTTTTCTCTGTTTCATATTATAGGCTTGAGTTAAAACGCCGTTTTTCCTGCGTTTTCAAACAAAAAAATACTGGAAAAAATTTCAGCGTAAATAGT</canonical>
            <polymorphic>AGCTTGGTCAGATTCCGGCAAAGACCCCCCCTCAAAATCAAGTGAAAAACGCGTTTTTGTATTCTTATTAACCGGTACTGTAGAATCCTTTCTATTGTAGCCTCGCCGAGAATTCTGTTCTACAGTATCCGTAGTTTTTATATGTTGAGTTACTCTGCAAAACCATTGTATTCTTCTCCTCAACTTCATCTCTTTGATCCTGTGACGTAATGTGTAAAATCTAAAACACAAAACTCCCACACACTGCACCCACTGGCTTACAATTCTTCACCTTAATTTCGTCCATTCATCTCAGTTTCCCATATCAGTTTGTCTATGAAATACGACCCTGATAACCTGTTTATCTCCTTTTTTCCTCCTCTTTAAAGAACAAAATTGTTGTATATTACACTAAAAAATGCTTCTGGGTTGATTCTGCAAAATTAGAAGAAGAAGCCTATTTTGATGAACAATTATTTGAATTTATTGTTTATTTATTACTAAACACGAATGACAACGARATGAACAAGAAATTGCAAAATAATAATATAATAATATAAAGAGACCCGACTGAGAAATTAATAAAAACAAAATGGAGAATTAAACATGAACTTCCTGGGTCCTCCCTGTTAGTATGGACCATAACGACTGCCAACTTTCCATAGACGCCAAAGCTCCGAAATCGATAAATCTGAAGAATTCGATACTGCTAAAATTTTTGAATGTTAATCTCGAAATTCGAAATTTCAAAAGTTTGTAGTTCTGATAGTCAGAGATTCTCTAGAAAAACAAAGGCTTCTGAAGTTCTGTGTTTTTGGAATTACAGAGAAATAAGTATCTTAAAAAATTATGTTTAAAATGTGGAAATTTTCGCTGATATTTGGGAATCTCAGTACTTTTTTAATGGAATAGTTTTCAAAATGGGTTTTTCTCTGTTTCATATTATAGGCTTGAGTTAAAACGCCGTTTTTCCTGCGTTTTCAAACAAAAAAATACTGGAAAAAATTTCAGCGTAAATAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATGAAATACGACCCTGATAAC</pcr_primer_p1>
		<pcr_primer_p2>TTATTAATTTCTCAGTCGGGTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTATGAAATACGACCCTGATAACCTGTTTATCTCCTTTTTTCCTCCTCTTTAAAGAACAAAATTGTTGTATATTACACTAAAAAATGCTTCTGGGTTGATTCTGCAAAATTAGAAGAAGAAGCCTATTTTGATGAACAATTATTTGAATTTATTGTTTATTTATTACTAAACACGAATGACAACGAAATGAACAAGAAATTGCAAAATAATAATATAATAATATAAAGAGACCCGACTGAGAAATTAATAA</canonical_amplicon>
		<polymorphic_amplicon>CTATGAAATACGACCCTGATAACCTGTTTATCTCCTTTTTTCCTCCTCTTTAAAGAACAAAATTGTTGTATATTACACTAAAAAATGCTTCTGGGTTGATTCTGCAAAATTAGAAGAAGAAGCCTATTTTGATGAACAATTATTTGAATTTATTGTTTATTTATTACTAAACACGAATGACAACGARATGAACAAGAAATTGCAAAATAATAATATAATAATATAAAGAGACCCGACTGAGAAATTAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8072</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>632322</contig_pos>
        <strand>+</strand>
        <context>GAACTCAACT[A/G]TGAAAAGTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACCGAGGTTTTCAGGTAAAAAGACGAAAAAAATGCCTCGGAACTCAACT</left_flank>
        <right_flank>TGAAAAGTGTCGTGAGCGTACCGAAGACCGAATCATTTAAATTTATCAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTGGGGAAAACTGGAGAAAACTATAGAAAACATTTTGCCAAAGTGTGGGGTCAAAATATCAACTTTGAAAATTTGTCTGAAATTCCAGCCAAATTTTCAAAGCCGATATATTGATTCCAAATTTTGGCAATATGTTTCCTATAGTTTTCTCCAGTTTTCCCCAAAGTTTCAGCCAGATTGGAACACTCCGAGTTTTCGCGGAGTTGTTTTCCTTTTTTGCCGATTCCCTGAATAACCCCATTAAAGACAAGTGAAAGGATTTTTCTTAGCCACGTCCTCACTAGAGTAACTCTCCATGGCGAGACCCGTGCAGGTAATTCTGTGCGCCTTTAACGTTGAAATGGGCGGAACGGAAGTGGATGGCAGAGTTTTCAGTTTTTTTCAAATTTAATTGTTTTCCGGTTCAGACTAACCTTGTACTTGTTTTTTCACACCCAACGTGGAGTAAACCGAGGTTTTCAGGTAAAAAGACGAAAAAAATGCCTCGGAACTCAACTGTGAAAAGTGTCGTGAGCGTACCGAAGACCGAATCATTTAAATTTATCAGCTTGTCTGACATCGAAGGAACTTTGATTTTGAAAACCAAAGAAGGAGATGAAGAGACCGTTTGCTGCAGGTTTATATCACTAGATATTATTTAGAGAACAAAAACATTTTAATTTTCAGAGGTGATTCCGAATCGAGCCAAGATTGTCGTAAGATTCTGAAGGAATTTTTCGATGTCCTCGACTCCAAACAAGTTGACCAACTCCGGCTTTTTGGGATCAAACACCGAATGTTCAATTTCTACAGAAGTTACAAAACAGAATTCGCAGTTGCCTCGATTTTTTTCGACCAGTCAACAGATCTTCAAGTGCTTTACGATATCATTCCAAAGTGCTCCATTTTGAAGCATGTTACTCTGAAAGGAACCACGAACTATTCTTGTGAGAAAGGAGTCAGTTCGATGGATCGAACCAAAATTTCAGAATTTTCTAATTTCAGTACTACATAGTTCG</canonical>
            <polymorphic>CTTTGGGGAAAACTGGAGAAAACTATAGAAAACATTTTGCCAAAGTGTGGGGTCAAAATATCAACTTTGAAAATTTGTCTGAAATTCCAGCCAAATTTTCAAAGCCGATATATTGATTCCAAATTTTGGCAATATGTTTCCTATAGTTTTCTCCAGTTTTCCCCAAAGTTTCAGCCAGATTGGAACACTCCGAGTTTTCGCGGAGTTGTTTTCCTTTTTTGCCGATTCCCTGAATAACCCCATTAAAGACAAGTGAAAGGATTTTTCTTAGCCACGTCCTCACTAGAGTAACTCTCCATGGCGAGACCCGTGCAGGTAATTCTGTGCGCCTTTAACGTTGAAATGGGCGGAACGGAAGTGGATGGCAGAGTTTTCAGTTTTTTTCAAATTTAATTGTTTTCCGGTTCAGACTAACCTTGTACTTGTTTTTTCACACCCAACGTGGAGTAAACCGAGGTTTTCAGGTAAAAAGACGAAAAAAATGCCTCGGAACTCAACTRTGAAAAGTGTCGTGAGCGTACCGAAGACCGAATCATTTAAATTTATCAGCTTGTCTGACATCGAAGGAACTTTGATTTTGAAAACCAAAGAAGGAGATGAAGAGACCGTTTGCTGCAGGTTTATATCACTAGATATTATTTAGAGAACAAAAACATTTTAATTTTCAGAGGTGATTCCGAATCGAGCCAAGATTGTCGTAAGATTCTGAAGGAATTTTTCGATGTCCTCGACTCCAAACAAGTTGACCAACTCCGGCTTTTTGGGATCAAACACCGAATGTTCAATTTCTACAGAAGTTACAAAACAGAATTCGCAGTTGCCTCGATTTTTTTCGACCAGTCAACAGATCTTCAAGTGCTTTACGATATCATTCCAAAGTGCTCCATTTTGAAGCATGTTACTCTGAAAGGAACCACGAACTATTCTTGTGAGAAAGGAGTCAGTTCGATGGATCGAACCAAAATTTCAGAATTTTCTAATTTCAGTACTACATAGTTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>499 393 108</canonical_bands>
                <polymorphic_bands>607 393</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>138 114 100 85 73 69 68 58 47 45 35 34 30 23 19 15 14 9 8 7 5 2 2</canonical_bands>
                <polymorphic_bands>138 114 100 85 73 69 68 65 47 45 35 34 30 23 19 15 14 9 8 5 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGGCAGAGTTTTCAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAACGGTCTCTTCATCTCCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGGCAGAGTTTTCAGTTTTTTTCAAATTTAATTGTTTTCCGGTTCAGACTAACCTTGTACTTGTTTTTTCACACCCAACGTGGAGTAAACCGAGGTTTTCAGGTAAAAAGACGAAAAAAATGCCTCGGAACTCAACTGTGAAAAGTGTCGTGAGCGTACCGAAGACCGAATCATTTAAATTTATCAGCTTGTCTGACATCGAAGGAACTTTGATTTTGAAAACCAAAGAAGGAGATGAAGAGACCGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATGGCAGAGTTTTCAGTTTTTTTCAAATTTAATTGTTTTCCGGTTCAGACTAACCTTGTACTTGTTTTTTCACACCCAACGTGGAGTAAACCGAGGTTTTCAGGTAAAAAGACGAAAAAAATGCCTCGGAACTCAACTRTGAAAAGTGTCGTGAGCGTACCGAAGACCGAATCATTTAAATTTATCAGCTTGTCTGACATCGAAGGAACTTTGATTTTGAAAACCAAAGAAGGAGATGAAGAGACCGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8085</snp_id>
        <super_contig>c004001729.Contig1</super_contig>
        <contig_pos>7749</contig_pos>
        <strand>+</strand>
        <context>aatttaaatt[G/T]aaaaaaaaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAGCCTTCTCCAGCTGTCCACATTTTTTGTTCAGACTGAAAATTTAAATT</left_flank>
        <right_flank>AAAAAAAAAACATTTGAAAATTGTCTGAAAATCCAGAATAATTTGGCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCCAAAAATTCTAAAAATTCTAAAAATTCTAAAATTCCAAAAATTCCAAACATCCCAAAATTCCAAAATTCCAAACATTCCAGAAATTCCAGAAATTCCAAATATTTCAAAATTTCGAAATTTCGAACATTCCTCAAAAATCCGGACTACTGTATAACCATACTCACGGAACTGGTTTCGGAATCGCGTCCAACTTCTTCTGAAACTCAATTTTCATCTTCTCAATTTCCATTTTCAGCTTCTCGTTCTCCAATTTTGCAGCCTCCTCAGCCTTCTCCAGCTGTCCACATTTTTTGTTCAGACTGAAAATTTAAATTAAAAAAAAAAACATTTGAAAATTGTCTGAAAATCCAGAATAATTTGGCTGAAATTCCAAAAAATGAAATTTTTTTTTCAAAAATTTCCAAATGTCCCTCACTTCTGAATCTGATTTTTCTGATTCTGAATCGTCTTGTTTTCCGCGTCCTTGGCATTTTTCAGCTTTTGCTCCAATTGGGCCACATTGTCCGTCAGGCTGAAATTTTTAGAAAAAATTTGTTTTCAAAATTATTTTTAAAACGCCTACATCTTGTTCTGAGAACCCAATTTCGATGCTGCAGCATTTTTCCGCTGATTTTCAGTTCTCGATTGTTTCAGCGAATTCTGAACTTTTGATTTTTCCTCTTCCAGCGATTTCAGATTCTTGTTTAGCGTCGTCAGAGCATCCGAATGCGATTGGGCAACTTGTTGGGCTGTTTTGGCGGCATTTCTGAATAGAAAGGATTACTGTAGAATTGCTGATCTCAAAACTTTTCAAAAAATTTCGAAAATTTCAATTT</canonical>
            <polymorphic>AGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCCAAAAATTCTAAAAATTCTAAAAATTCTAAAATTCCAAAAATTCCAAACATCCCAAAATTCCAAAATTCCAAACATTCCAGAAATTCCAGAAATTCCAAATATTTCAAAATTTCGAAATTTCGAACATTCCTCAAAAATCCGGACTACTGTATAACCATACTCACGGAACTGGTTTCGGAATCGCGTCCAACTTCTTCTGAAACTCAATTTTCATCTTCTCAATTTCCATTTTCAGCTTCTCGTTCTCCAATTTTGCAGCCTCCTCAGCCTTCTCCAGCTGTCCACATTTTTTGTTCAGACTGAAAATTTAAATTKAAAAAAAAAACATTTGAAAATTGTCTGAAAATCCAGAATAATTTGGCTGAAATTCCAAAAAATGAAATTTTTTTTTCAAAAATTTCCAAATGTCCCTCACTTCTGAATCTGATTTTTCTGATTCTGAATCGTCTTGTTTTCCGCGTCCTTGGCATTTTTCAGCTTTTGCTCCAATTGGGCCACATTGTCCGTCAGGCTGAAATTTTTAGAAAAAATTTGTTTTCAAAATTATTTTTAAAACGCCTACATCTTGTTCTGAGAACCCAATTTCGATGCTGCAGCATTTTTCCGCTGATTTTCAGTTCTCGATTGTTTCAGCGAATTCTGAACTTTTGATTTTTCCTCTTCCAGCGATTTCAGATTCTTGTTTAGCGTCGTCAGAGCATCCGAATGCGATTGGGCAACTTGTTGGGCTGTTTTGGCGGCATTTCTGAATAGAAAGGATTACTGTAGAATTGCTGATCTCAAAACTTTTCAAAAAATTTCGAAAATTTCAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>493 265 237 5</canonical_bands>
                <polymorphic_bands>493 265 242</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCCGGACTACTGTATAACCAT</pcr_primer_p1>
		<pcr_primer_p2>GGAATTTCAGCCAAATTATTC</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>AATCCGGACTACTGTATAACCATACTCACGGAACTGGTTTCGGAATCGCGTCCAACTTCTTCTGAAACTCAATTTTCATCTTCTCAATTTCCATTTTCAGCTTCTCGTTCTCCAATTTTGCAGCCTCCTCAGCCTTCTCCAGCTGTCCACATTTTTTGTTCAGACTGAAAATTTAAATTAAAAAAAAAAACATTTGAAAATTGTCTGAAAATCCAGAATAATTTGGCTGAAATTCC</canonical_amplicon>
		<polymorphic_amplicon>AATCCGGACTACTGTATAACCATACTCACGGAACTGGTTTCGGAATCGCGTCCAACTTCTTCTGAAACTCAATTTTCATCTTCTCAATTTCCATTTTCAGCTTCTCGTTCTCCAATTTTGCAGCCTCCTCAGCCTTCTCCAGCTGTCCACATTTTTTGTTCAGACTGAAAATTTAAATTKAAAAAAAAAACATTTGAAAATTGTCTGAAAATCCAGAATAATTTGGCTGAAATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8097</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>39549</contig_pos>
        <strand>+</strand>
        <context>ACCTAGACCC[A/G]AAAAAGTGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTCTCTTTTTTCTGGTTTAAAAATCCCCAAATTTGGATTACCTAGACCC</left_flank>
        <right_flank>AAAAAGTGGGCGGAGCCTCGTCTTACCTGTCCATCATTAGTCTCCAAATA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAAAGCAATTTTTGAATAATTATATTCAGAAGAACTAGATACAAAATGTGAAAAAAAAACAGAAAAATAGATTTGAAGGATATCTGGTGTGTTTTTTTTTGTTGAAAAACTTGAATACAAACAATTTATTTTTCAAAATAAAAATTGAAAATCTCAATTAAAAACAGCCAAACATGCAACATTTTTCAGTTCAATGCTTTTATAAACCCATTGTCTTTTGCGGTTACATGTCAGTCTTGGCCAATATGGGGATGATCCATATTTTACAGATTGGGAGAACATCTGAAAGTTCAAAAAATCAAAAACTTTTGGAATTTTAGACTTTTTTTTAGACTTGTCAGAAGGCTACAACACTAGAAACATTTTGCTGATCTTCAATTTTTCGAAAAATTTTGAAACAGCAAATTTTTTTCGAAATTCCAAAAATTTGGTTTTCAAACAAAAAGAGTCTCTTTTTTCTGGTTTAAAAATCCCCAAATTTGGATTACCTAGACCCGAAAAAGTGGGCGGAGCCTCGTCTTACCTGTCCATCATTAGTCTCCAAATACAACACATTTCGCGAAGGTTTTTGACTGGAAAATTCACAAGACATCTCAATAAAACATCCCAAACGCTTTTCAAATTTCACATTTTTCTCCAAAAAATTTCTCCCGAAATTATGGGAAATATCCGATTGCTTTCTGGATAAAATATCTCCGGCCGGTATTGGATCAAACGAAGAGCATTGACAATTATCTTTATTCAATAATTTATTAGGGAAATTCAACCAAAATTCCAACCTTGAAGTCCAAAAACTGAAACAGTTAGAAAAGGCAAAAATATAAGGAAAAGTTGCATTTTTGAGAAAACTGAAAGTTTAAAGTTTGGTGACAGTTTTATAGGTTTTCTGGAAGAAAATCTATAAAATTTTATGGGATTTTTGGAGAATTTATTGGGTTCGAAACGATTTTAAAAAAAGTTTTTTTTTATCGTTAGAGATGGGAAAAAACTTGCGAAA</canonical>
            <polymorphic>TGAAAAAGCAATTTTTGAATAATTATATTCAGAAGAACTAGATACAAAATGTGAAAAAAAAACAGAAAAATAGATTTGAAGGATATCTGGTGTGTTTTTTTTTGTTGAAAAACTTGAATACAAACAATTTATTTTTCAAAATAAAAATTGAAAATCTCAATTAAAAACAGCCAAACATGCAACATTTTTCAGTTCAATGCTTTTATAAACCCATTGTCTTTTGCGGTTACATGTCAGTCTTGGCCAATATGGGGATGATCCATATTTTACAGATTGGGAGAACATCTGAAAGTTCAAAAAATCAAAAACTTTTGGAATTTTAGACTTTTTTTTAGACTTGTCAGAAGGCTACAACACTAGAAACATTTTGCTGATCTTCAATTTTTCGAAAAATTTTGAAACAGCAAATTTTTTTCGAAATTCCAAAAATTTGGTTTTCAAACAAAAAGAGTCTCTTTTTTCTGGTTTAAAAATCCCCAAATTTGGATTACCTAGACCCRAAAAAGTGGGCGGAGCCTCGTCTTACCTGTCCATCATTAGTCTCCAAATACAACACATTTCGCGAAGGTTTTTGACTGGAAAATTCACAAGACATCTCAATAAAACATCCCAAACGCTTTTCAAATTTCACATTTTTCTCCAAAAAATTTCTCCCGAAATTATGGGAAATATCCGATTGCTTTCTGGATAAAATATCTCCGGCCGGTATTGGATCAAACGAAGAGCATTGACAATTATCTTTATTCAATAATTTATTAGGGAAATTCAACCAAAATTCCAACCTTGAAGTCCAAAAACTGAAACAGTTAGAAAAGGCAAAAATATAAGGAAAAGTTGCATTTTTGAGAAAACTGAAAGTTTAAAGTTTGGTGACAGTTTTATAGGTTTTCTGGAAGAAAATCTATAAAATTTTATGGGATTTTTGGAGAATTTATTGGGTTCGAAACGATTTTAAAAAAAGTTTTTTTTTATCGTTAGAGATGGGAAAAAACTTGCGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGAAACATTTTGCTGATCTTC</pcr_primer_p1>
		<pcr_primer_p2>TGTTTTATTGAGATGTCTTGTGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTAGAAACATTTTGCTGATCTTCAATTTTTCGAAAAATTTTGAAACAGCAAATTTTTTTCGAAATTCCAAAAATTTGGTTTTCAAACAAAAAGAGTCTCTTTTTTCTGGTTTAAAAATCCCCAAATTTGGATTACCTAGACCCGAAAAAGTGGGCGGAGCCTCGTCTTACCTGTCCATCATTAGTCTCCAAATACAACACATTTCGCGAAGGTTTTTGACTGGAAAATTCACAAGACATCTCAATAAAACA</canonical_amplicon>
		<polymorphic_amplicon>CTAGAAACATTTTGCTGATCTTCAATTTTTCGAAAAATTTTGAAACAGCAAATTTTTTTCGAAATTCCAAAAATTTGGTTTTCAAACAAAAAGAGTCTCTTTTTTCTGGTTTAAAAATCCCCAAATTTGGATTACCTAGACCCRAAAAAGTGGGCGGAGCCTCGTCTTACCTGTCCATCATTAGTCTCCAAATACAACACATTTCGCGAAGGTTTTTGACTGGAAAATTCACAAGACATCTCAATAAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8098</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>39661</contig_pos>
        <strand>+</strand>
        <context>AAAACATCCC[A/C]AACGCTTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCGAAGGTTTTTGACTGGAAAATTCACAAGACATCTCAATAAAACATCCC</left_flank>
        <right_flank>AACGCTTTTCAAATTTCACATTTTTCTCCAAAAAATTTCTCCCGAAATTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGAATACAAACAATTTATTTTTCAAAATAAAAATTGAAAATCTCAATTAAAAACAGCCAAACATGCAACATTTTTCAGTTCAATGCTTTTATAAACCCATTGTCTTTTGCGGTTACATGTCAGTCTTGGCCAATATGGGGATGATCCATATTTTACAGATTGGGAGAACATCTGAAAGTTCAAAAAATCAAAAACTTTTGGAATTTTAGACTTTTTTTTAGACTTGTCAGAAGGCTACAACACTAGAAACATTTTGCTGATCTTCAATTTTTCGAAAAATTTTGAAACAGCAAATTTTTTTCGAAATTCCAAAAATTTGGTTTTCAAACAAAAAGAGTCTCTTTTTTCTGGTTTAAAAATCCCCAAATTTGGATTACCTAGACCCGAAAAAGTGGGCGGAGCCTCGTCTTACCTGTCCATCATTAGTCTCCAAATACAACACATTTCGCGAAGGTTTTTGACTGGAAAATTCACAAGACATCTCAATAAAACATCCCAAACGCTTTTCAAATTTCACATTTTTCTCCAAAAAATTTCTCCCGAAATTATGGGAAATATCCGATTGCTTTCTGGATAAAATATCTCCGGCCGGTATTGGATCAAACGAAGAGCATTGACAATTATCTTTATTCAATAATTTATTAGGGAAATTCAACCAAAATTCCAACCTTGAAGTCCAAAAACTGAAACAGTTAGAAAAGGCAAAAATATAAGGAAAAGTTGCATTTTTGAGAAAACTGAAAGTTTAAAGTTTGGTGACAGTTTTATAGGTTTTCTGGAAGAAAATCTATAAAATTTTATGGGATTTTTGGAGAATTTATTGGGTTCGAAACGATTTTAAAAAAAGTTTTTTTTTATCGTTAGAGATGGGAAAAAACTTGCGAAACCTTTTGCGAAACGAAACCCAGCTTTACCATACGAGCCGGCTTCAGGTCCATTAACATGTCGCGGGCCGGGCTAGAATGACGAAAAACCCGATTTCGGCCAAATTTGCCATT</canonical>
            <polymorphic>CTTGAATACAAACAATTTATTTTTCAAAATAAAAATTGAAAATCTCAATTAAAAACAGCCAAACATGCAACATTTTTCAGTTCAATGCTTTTATAAACCCATTGTCTTTTGCGGTTACATGTCAGTCTTGGCCAATATGGGGATGATCCATATTTTACAGATTGGGAGAACATCTGAAAGTTCAAAAAATCAAAAACTTTTGGAATTTTAGACTTTTTTTTAGACTTGTCAGAAGGCTACAACACTAGAAACATTTTGCTGATCTTCAATTTTTCGAAAAATTTTGAAACAGCAAATTTTTTTCGAAATTCCAAAAATTTGGTTTTCAAACAAAAAGAGTCTCTTTTTTCTGGTTTAAAAATCCCCAAATTTGGATTACCTAGACCCGAAAAAGTGGGCGGAGCCTCGTCTTACCTGTCCATCATTAGTCTCCAAATACAACACATTTCGCGAAGGTTTTTGACTGGAAAATTCACAAGACATCTCAATAAAACATCCCMAACGCTTTTCAAATTTCACATTTTTCTCCAAAAAATTTCTCCCGAAATTATGGGAAATATCCGATTGCTTTCTGGATAAAATATCTCCGGCCGGTATTGGATCAAACGAAGAGCATTGACAATTATCTTTATTCAATAATTTATTAGGGAAATTCAACCAAAATTCCAACCTTGAAGTCCAAAAACTGAAACAGTTAGAAAAGGCAAAAATATAAGGAAAAGTTGCATTTTTGAGAAAACTGAAAGTTTAAAGTTTGGTGACAGTTTTATAGGTTTTCTGGAAGAAAATCTATAAAATTTTATGGGATTTTTGGAGAATTTATTGGGTTCGAAACGATTTTAAAAAAAGTTTTTTTTTATCGTTAGAGATGGGAAAAAACTTGCGAAACCTTTTGCGAAACGAAACCCAGCTTTACCATACGAGCCGGCTTCAGGTCCATTAACATGTCGCGGGCCGGGCTAGAATGACGAAAAACCCGATTTCGGCCAAATTTGCCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCCATCATTAGTCTCCAAATA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGGTTGAATTTCCCTAATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTCCATCATTAGTCTCCAAATACAACACATTTCGCGAAGGTTTTTGACTGGAAAATTCACAAGACATCTCAATAAAACATCCCAAACGCTTTTCAAATTTCACATTTTTCTCCAAAAAATTTCTCCCGAAATTATGGGAAATATCCGATTGCTTTCTGGATAAAATATCTCCGGCCGGTATTGGATCAAACGAAGAGCATTGACAATTATCTTTATTCAATAATTTATTAGGGAAATTCAACCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TGTCCATCATTAGTCTCCAAATACAACACATTTCGCGAAGGTTTTTGACTGGAAAATTCACAAGACATCTCAATAAAACATCCCMAACGCTTTTCAAATTTCACATTTTTCTCCAAAAAATTTCTCCCGAAATTATGGGAAATATCCGATTGCTTTCTGGATAAAATATCTCCGGCCGGTATTGGATCAAACGAAGAGCATTGACAATTATCTTTATTCAATAATTTATTAGGGAAATTCAACCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8099</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>39865</contig_pos>
        <strand>+</strand>
        <context>GTTAGAAAAG[G/T]CAAAAATATA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCAACCAAAATTCCAACCTTGAAGTCCAAAAACTGAAACAGTTAGAAAAG</left_flank>
        <right_flank>CAAAAATATAAGGAAAAGTTGCATTTTTGAGAAAACTGAAAGTTTAAAGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTAGACTTTTTTTTAGACTTGTCAGAAGGCTACAACACTAGAAACATTTTGCTGATCTTCAATTTTTCGAAAAATTTTGAAACAGCAAATTTTTTTCGAAATTCCAAAAATTTGGTTTTCAAACAAAAAGAGTCTCTTTTTTCTGGTTTAAAAATCCCCAAATTTGGATTACCTAGACCCGAAAAAGTGGGCGGAGCCTCGTCTTACCTGTCCATCATTAGTCTCCAAATACAACACATTTCGCGAAGGTTTTTGACTGGAAAATTCACAAGACATCTCAATAAAACATCCCAAACGCTTTTCAAATTTCACATTTTTCTCCAAAAAATTTCTCCCGAAATTATGGGAAATATCCGATTGCTTTCTGGATAAAATATCTCCGGCCGGTATTGGATCAAACGAAGAGCATTGACAATTATCTTTATTCAATAATTTATTAGGGAAATTCAACCAAAATTCCAACCTTGAAGTCCAAAAACTGAAACAGTTAGAAAAGGCAAAAATATAAGGAAAAGTTGCATTTTTGAGAAAACTGAAAGTTTAAAGTTTGGTGACAGTTTTATAGGTTTTCTGGAAGAAAATCTATAAAATTTTATGGGATTTTTGGAGAATTTATTGGGTTCGAAACGATTTTAAAAAAAGTTTTTTTTTATCGTTAGAGATGGGAAAAAACTTGCGAAACCTTTTGCGAAACGAAACCCAGCTTTACCATACGAGCCGGCTTCAGGTCCATTAACATGTCGCGGGCCGGGCTAGAATGACGAAAAACCCGATTTCGGCCAAATTTGCCATTCTTGCCCGGCCCGTATGGTAAAGATAAGATGATGGACTTCGTCGAGATCTATCATTTGATATCAAATCCGTCGAAATATCTTGTTCTGAAGCCGAGTTATCTGCCGGCCCGCCATTTGCCCGGGCCGGCCCGTTTGCAACTATGTAAAAAAATTAGTTTCTTGGAAATGCAGAAACTCGGAATTTCAGAGAAATTGGGAACCAA</canonical>
            <polymorphic>ATTTTAGACTTTTTTTTAGACTTGTCAGAAGGCTACAACACTAGAAACATTTTGCTGATCTTCAATTTTTCGAAAAATTTTGAAACAGCAAATTTTTTTCGAAATTCCAAAAATTTGGTTTTCAAACAAAAAGAGTCTCTTTTTTCTGGTTTAAAAATCCCCAAATTTGGATTACCTAGACCCGAAAAAGTGGGCGGAGCCTCGTCTTACCTGTCCATCATTAGTCTCCAAATACAACACATTTCGCGAAGGTTTTTGACTGGAAAATTCACAAGACATCTCAATAAAACATCCCAAACGCTTTTCAAATTTCACATTTTTCTCCAAAAAATTTCTCCCGAAATTATGGGAAATATCCGATTGCTTTCTGGATAAAATATCTCCGGCCGGTATTGGATCAAACGAAGAGCATTGACAATTATCTTTATTCAATAATTTATTAGGGAAATTCAACCAAAATTCCAACCTTGAAGTCCAAAAACTGAAACAGTTAGAAAAGKCAAAAATATAAGGAAAAGTTGCATTTTTGAGAAAACTGAAAGTTTAAAGTTTGGTGACAGTTTTATAGGTTTTCTGGAAGAAAATCTATAAAATTTTATGGGATTTTTGGAGAATTTATTGGGTTCGAAACGATTTTAAAAAAAGTTTTTTTTTATCGTTAGAGATGGGAAAAAACTTGCGAAACCTTTTGCGAAACGAAACCCAGCTTTACCATACGAGCCGGCTTCAGGTCCATTAACATGTCGCGGGCCGGGCTAGAATGACGAAAAACCCGATTTCGGCCAAATTTGCCATTCTTGCCCGGCCCGTATGGTAAAGATAAGATGATGGACTTCGTCGAGATCTATCATTTGATATCAAATCCGTCGAAATATCTTGTTCTGAAGCCGAGTTATCTGCCGGCCCGCCATTTGCCCGGGCCGGCCCGTTTGCAACTATGTAAAAAAATTAGTTTCTTGGAAATGCAGAAACTCGGAATTTCAGAGAAATTGGGAACCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTAGGGAAATTCAACCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCCCATCTCTAACGATAA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>TATTAGGGAAATTCAACCAAAATTCCAACCTTGAAGTCCAAAAACTGAAACAGTTAGAAAAGGCAAAAATATAAGGAAAAGTTGCATTTTTGAGAAAACTGAAAGTTTAAAGTTTGGTGACAGTTTTATAGGTTTTCTGGAAGAAAATCTATAAAATTTTATGGGATTTTTGGAGAATTTATTGGGTTCGAAACGATTTTAAAAAAAGTTTTTTTTTATCGTTAGAGATGGGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TATTAGGGAAATTCAACCAAAATTCCAACCTTGAAGTCCAAAAACTGAAACAGTTAGAAAAGKCAAAAATATAAGGAAAAGTTGCATTTTTGAGAAAACTGAAAGTTTAAAGTTTGGTGACAGTTTTATAGGTTTTCTGGAAGAAAATCTATAAAATTTTATGGGATTTTTGGAGAATTTATTGGGTTCGAAACGATTTTAAAAAAAGTTTTTTTTTATCGTTAGAGATGGGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8100</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>39973</contig_pos>
        <strand></strand>
        <context>ATGGGATTTT[T/C]GYAGAATTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAGTTTTATAGGTTTTCTGGAAGAAAATCTATAAAATTTTATGGGATTTT</left_flank>
        <right_flank>GGAGAATTTATTGGGTTCGAAACGATTTTAAAAAAAGTTTTTTTTTATCG</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATTTGGTTTTCAAACAAAAAGAGTCTCTTTTTTCTGGTTTAAAAATCCCCAAATTTGGATTACCTAGACCCGAAAAAGTGGGCGGAGCCTCGTCTTACCTGTCCATCATTAGTCTCCAAATACAACACATTTCGCGAAGGTTTTTGACTGGAAAATTCACAAGACATCTCAATAAAACATCCCAAACGCTTTTCAAATTTCACATTTTTCTCCAAAAAATTTCTCCCGAAATTATGGGAAATATCCGATTGCTTTCTGGATAAAATATCTCCGGCCGGTATTGGATCAAACGAAGAGCATTGACAATTATCTTTATTCAATAATTTATTAGGGAAATTCAACCAAAATTCCAACCTTGAAGTCCAAAAACTGAAACAGTTAGAAAAGGCAAAAATATAAGGAAAAGTTGCATTTTTGAGAAAACTGAAAGTTTAAAGTTTGGTGACAGTTTTATAGGTTTTCTGGAAGAAAATCTATAAAATTTTATGGGATTTTTGGAGAATTTATTGGGTTCGAAACGATTTTAAAAAAAGTTTTTTTTTATCGTTAGAGATGGGAAAAAACTTGCGAAACCTTTTGCGAAACGAAACCCAGCTTTACCATACGAGCCGGCTTCAGGTCCATTAACATGTCGCGGGCCGGGCTAGAATGACGAAAAACCCGATTTCGGCCAAATTTGCCATTCTTGCCCGGCCCGTATGGTAAAGATAAGATGATGGACTTCGTCGAGATCTATCATTTGATATCAAATCCGTCGAAATATCTTGTTCTGAAGCCGAGTTATCTGCCGGCCCGCCATTTGCCCGGGCCGGCCCGTTTGCAACTATGTAAAAAAATTAGTTTCTTGGAAATGCAGAAACTCGGAATTTCAGAGAAATTGGGAACCAAACTACCGTAAAAACTTAAATAGAATCCCCGAATCGTCACATTTGAGCCCATGTGTCTCATTTTCTGTGAGAGATATCAAAACATGGTCAGCTGATAAAATGTTGCTGA</canonical>
            <polymorphic>AAAAATTTGGTTTTCAAACAAAAAGAGTCTCTTTTTTCTGGTTTAAAAATCCCCAAATTTGGATTACCTAGACCCGAAAAAGTGGGCGGAGCCTCGTCTTACCTGTCCATCATTAGTCTCCAAATACAACACATTTCGCGAAGGTTTTTGACTGGAAAATTCACAAGACATCTCAATAAAACATCCCAAACGCTTTTCAAATTTCACATTTTTCTCCAAAAAATTTCTCCCGAAATTATGGGAAATATCCGATTGCTTTCTGGATAAAATATCTCCGGCCGGTATTGGATCAAACGAAGAGCATTGACAATTATCTTTATTCAATAATTTATTAGGGAAATTCAACCAAAATTCCAACCTTGAAGTCCAAAAACTGAAACAGTTAGAAAAGGCAAAAATATAAGGAAAAGTTGCATTTTTGAGAAAACTGAAAGTTTAAAGTTTGGTGACAGTTTTATAGGTTTTCTGGAAGAAAATCTATAAAATTTTATGGGATTTTYGGAGAATTTATTGGGTTCGAAACGATTTTAAAAAAAGTTTTTTTTTATCGTTAGAGATGGGAAAAAACTTGCGAAACCTTTTGCGAAACGAAACCCAGCTTTACCATACGAGCCGGCTTCAGGTCCATTAACATGTCGCGGGCCGGGCTAGAATGACGAAAAACCCGATTTCGGCCAAATTTGCCATTCTTGCCCGGCCCGTATGGTAAAGATAAGATGATGGACTTCGTCGAGATCTATCATTTGATATCAAATCCGTCGAAATATCTTGTTCTGAAGCCGAGTTATCTGCCGGCCCGCCATTTGCCCGGGCCGGCCCGTTTGCAACTATGTAAAAAAATTAGTTTCTTGGAAATGCAGAAACTCGGAATTTCAGAGAAATTGGGAACCAAACTACCGTAAAAACTTAAATAGAATCCCCGAATCGTCACATTTGAGCCCATGTGTCTCATTTTCTGTGAGAGATATCAAAACATGGTCAGCTGATAAAATGTTGCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTAGGGAAATTCAACCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCCCATCTCTAACGATAA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>TATTAGGGAAATTCAACCAAAATTCCAACCTTGAAGTCCAAAAACTGAAACAGTTAGAAAAGGCAAAAATATAAGGAAAAGTTGCATTTTTGAGAAAACTGAAAGTTTAAAGTTTGGTGACAGTTTTATAGGTTTTCTGGAAGAAAATCTATAAAATTTTATGGGATTTTTGGAGAATTTATTGGGTTCGAAACGATTTTAAAAAAAGTTTTTTTTTATCGTTAGAGATGGGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TATTAGGGAAATTCAACCAAAATTCCAACCTTGAAGTCCAAAAACTGAAACAGTTAGAAAAGGCAAAAATATAAGGAAAAGTTGCATTTTTGAGAAAACTGAAAGTTTAAAGTTTGGTGACAGTTTTATAGGTTTTCTGGAAGAAAATCTATAAAATTTTATGGGATTTTYGGAGAATTTATTGGGTTCGAAACGATTTTAAAAAAAGTTTTTTTTTATCGTTAGAGATGGGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8101</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>42375</contig_pos>
        <strand>+</strand>
        <context>CGTATAAGAA[G/T]GGGCGCGGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTCGGCCACGCGCGCACAATTACAGAGGAGGGGTGGATGGCGTATAAGAA</left_flank>
        <right_flank>GGGCGCGGAAAAGGGGAGCGGAGGGGAGCAGGAGGGTAGGCGAGATTAGG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCTTCACAAGTTCAACTCCTCGAGAGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATTTCCACCCACCTTTAAAAAAGTTTTTGAAACTGCAATTTTTTTTCTTTTTTTTCGGGGATTTTTGGACCTGATTTGGTCAATAAAACCTTTGAGAAACCGTTTTTTGCCAGAATTTTTTAAAAATTATAACTTATTGAAATCGCTATTTAAGTAATTTTTACGCTATGATACACCGCAAAGCCGGCAAGCTTCACGTAGTTCAGCTGGAAAAAAGCAAAAGGTGTCATGAAATGATTTCTAGACCTTGTAGCAAAAAAGCAAAAAGGATCAAAAAGACTTACGCACCAGTGGGAGTCGAACCCGTGACCTCTAGATTCAAAATCAGGCGCGTTAACTAGTCGGCCACGCGCGCACAATTACAGAGGAGGGGTGGATGGCGTATAAGAAGGGGCGCGGAAAAGGGGAGCGGAGGGGAGCAGGAGGGTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATT</canonical>
            <polymorphic>GCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCTTCACAAGTTCAACTCCTCGAGAGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATTTCCACCCACCTTTAAAAAAGTTTTTGAAACTGCAATTTTTTTTCTTTTTTTTCGGGGATTTTTGGACCTGATTTGGTCAATAAAACCTTTGAGAAACCGTTTTTTGCCAGAATTTTTTAAAAATTATAACTTATTGAAATCGCTATTTAAGTAATTTTTACGCTATGATACACCGCAAAGCCGGCAAGCTTCACGTAGTTCAGCTGGAAAAAAGCAAAAGGTGTCATGAAATGATTTCTAGACCTTGTAGCAAAAAAGCAAAAAGGATCAAAAAGACTTACGCACCAGTGGGAGTCGAACCCGTGACCTCTAGATTCAAAATCAGGCGCGTTAACTAGTCGGCCACGCGCGCACAATTACAGAGGAGGGGTGGATGGCGTATAAGAAKGGGCGCGGAAAAGGGGAGCGGAGGGGAGCAGGAGGGTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGGTGTCATGAAATGAT</pcr_primer_p1>
		<pcr_primer_p2>TATCCCCTAATCTCGCCTAC</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGGTGTCATGAAATGATTTCTAGACCTTGTAGCAAAAAAGCAAAAAGGATCAAAAAGACTTACGCACCAGTGGGAGTCGAACCCGTGACCTCTAGATTCAAAATCAGGCGCGTTAACTAGTCGGCCACGCGCGCACAATTACAGAGGAGGGGTGGATGGCGTATAAGAAGGGGCGCGGAAAAGGGGAGCGGAGGGGAGCAGGAGGGTAGGCGAGATTAGGGGATA</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGGTGTCATGAAATGATTTCTAGACCTTGTAGCAAAAAAGCAAAAAGGATCAAAAAGACTTACGCACCAGTGGGAGTCGAACCCGTGACCTCTAGATTCAAAATCAGGCGCGTTAACTAGTCGGCCACGCGCGCACAATTACAGAGGAGGGGTGGATGGCGTATAAGAAKGGGCGCGGAAAAGGGGAGCGGAGGGGAGCAGGAGGGTAGGCGAGATTAGGGGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8102</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>42350</contig_pos>
        <strand>+</strand>
        <context>ACAATKACAG[A/T]GGAGGGGTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATTCAAAATCAGGCGCGTTAACTAGTCGGCCACGCGCGCACAATTACAG</left_flank>
        <right_flank>GGAGGGGTGGATGGCGTATAAGAAGGGGCGCGGAAAAGGGGAGCGGAGGG</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAAACGAACGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCTTCACAAGTTCAACTCCTCGAGAGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATTTCCACCCACCTTTAAAAAAGTTTTTGAAACTGCAATTTTTTTTCTTTTTTTTCGGGGATTTTTGGACCTGATTTGGTCAATAAAACCTTTGAGAAACCGTTTTTTGCCAGAATTTTTTAAAAATTATAACTTATTGAAATCGCTATTTAAGTAATTTTTACGCTATGATACACCGCAAAGCCGGCAAGCTTCACGTAGTTCAGCTGGAAAAAAGCAAAAGGTGTCATGAAATGATTTCTAGACCTTGTAGCAAAAAAGCAAAAAGGATCAAAAAGACTTACGCACCAGTGGGAGTCGAACCCGTGACCTCTAGATTCAAAATCAGGCGCGTTAACTAGTCGGCCACGCGCGCACAATTACAGAGGAGGGGTGGATGGCGTATAAGAAGGGGCGCGGAAAAGGGGAGCGGAGGGGAGCAGGAGGGTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGG</canonical>
            <polymorphic>GCAAACGAACGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCTTCACAAGTTCAACTCCTCGAGAGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATTTCCACCCACCTTTAAAAAAGTTTTTGAAACTGCAATTTTTTTTCTTTTTTTTCGGGGATTTTTGGACCTGATTTGGTCAATAAAACCTTTGAGAAACCGTTTTTTGCCAGAATTTTTTAAAAATTATAACTTATTGAAATCGCTATTTAAGTAATTTTTACGCTATGATACACCGCAAAGCCGGCAAGCTTCACGTAGTTCAGCTGGAAAAAAGCAAAAGGTGTCATGAAATGATTTCTAGACCTTGTAGCAAAAAAGCAAAAAGGATCAAAAAGACTTACGCACCAGTGGGAGTCGAACCCGTGACCTCTAGATTCAAAATCAGGCGCGTTAACTAGTCGGCCACGCGCGCACAATTACAGWGGAGGGGTGGATGGCGTATAAGAAGGGGCGCGGAAAAGGGGAGCGGAGGGGAGCAGGAGGGTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGGTGTCATGAAATGAT</pcr_primer_p1>
		<pcr_primer_p2>TATCCCCTAATCTCGCCTAC</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGGTGTCATGAAATGATTTCTAGACCTTGTAGCAAAAAAGCAAAAAGGATCAAAAAGACTTACGCACCAGTGGGAGTCGAACCCGTGACCTCTAGATTCAAAATCAGGCGCGTTAACTAGTCGGCCACGCGCGCACAATTACAGAGGAGGGGTGGATGGCGTATAAGAAGGGGCGCGGAAAAGGGGAGCGGAGGGGAGCAGGAGGGTAGGCGAGATTAGGGGATA</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGGTGTCATGAAATGATTTCTAGACCTTGTAGCAAAAAAGCAAAAAGGATCAAAAAGACTTACGCACCAGTGGGAGTCGAACCCGTGACCTCTAGATTCAAAATCAGGCGCGTTAACTAGTCGGCCACGCGCGCACAATTACAGWGGAGGGGTGGATGGCGTATAAGAAGGGGCGCGGAAAAGGGGAGCGGAGGGGAGCAGGAGGGTAGGCGAGATTAGGGGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8106</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>86637</contig_pos>
        <strand>+</strand>
        <context>TTTGACAGTA[A/T]CTGTTTTCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCTGTTTCATTAGAATTAAATAAACCGATTAAACATCATTTTGACAGTA</left_flank>
        <right_flank>CTGTTTTCTAGAACAAATGTGACACACAGACAGACTTTGTAGACTTTCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAGCCCGTTTACTTCAGCAAAAATCATCGTTATCGCTCGAAAAGAACGCCAGCCGATATCTTTATTTCAAGCTCAATTATCTGTGTTCCTGTAAAATAAATCTAAAGGTGGTCAATTGATAAAATGTTTATCATAATATCATCTACATTTTATCAGTTGACACATTTTTGATATCTTTTATAGGAGCCGAGATATAGGGGCTCAAATATGGGCTGATTCTAATCCAACAGAAAAAACCATGTTTCCTCCATTTTTGGAGGATCTTCACTTTGAGCTCAATTACCTCGGTTCCTATAAAAGATAGAAAAAATGTGTCAACTAGTAAAATATTTATCATAATATCACCAACATTTTATCAGTTAACAGATTTTTGATATTACTTACAGTAGCCGAGATAAGTGAGCTTAACCTTTTGTCTTCCCAAAAATGGAGGAAACATGGTTTTTTTTTCTGTTTCATTAGAATTAAATAAACCGATTAAACATCATTTTGACAGTAACTGTTTTCTAGAACAAATGTGACACACAGACAGACTTTGTAGACTTTCAAGGAAAATTGAGTGAAAATGATGAAATTTGTCAAAAATTCGAGAAAAATAATGTGTCACTGCTCTTTGAGCTCAATTATCTCGGCTCCTGTAAAAGATATCAAAATCTGCCAACTGATAAAATGTTGACCATAATATTTTCAATGTTTTATCAGTTAACAAATTTTTGATATATTCCACAATAACCGTGATAATTGAGCTTGTATAGTCTGACGCTATTAGTAGAACTACGCGGTTGTGATCTTGCGCCGTTGGAGTATATGAAATAGCTCATTTTTAAAAAATCCCAGTGAAATGTCCCCGGAATTTTAATAGCCTTATGCTTGAACAAATTTCCTATCATTTGAAAAATTTTATGTTTCAAGGAAACTAAAAATATGTTCACATTTCTATTTCATACATTCCAACAGTCGTAGCCCCTATCTGATGTTTCTCTATTTTTCTGGTTTCAT</canonical>
            <polymorphic>TTAGCCCGTTTACTTCAGCAAAAATCATCGTTATCGCTCGAAAAGAACGCCAGCCGATATCTTTATTTCAAGCTCAATTATCTGTGTTCCTGTAAAATAAATCTAAAGGTGGTCAATTGATAAAATGTTTATCATAATATCATCTACATTTTATCAGTTGACACATTTTTGATATCTTTTATAGGAGCCGAGATATAGGGGCTCAAATATGGGCTGATTCTAATCCAACAGAAAAAACCATGTTTCCTCCATTTTTGGAGGATCTTCACTTTGAGCTCAATTACCTCGGTTCCTATAAAAGATAGAAAAAATGTGTCAACTAGTAAAATATTTATCATAATATCACCAACATTTTATCAGTTAACAGATTTTTGATATTACTTACAGTAGCCGAGATAAGTGAGCTTAACCTTTTGTCTTCCCAAAAATGGAGGAAACATGGTTTTTTTTTCTGTTTCATTAGAATTAAATAAACCGATTAAACATCATTTTGACAGTAWCTGTTTTCTAGAACAAATGTGACACACAGACAGACTTTGTAGACTTTCAAGGAAAATTGAGTGAAAATGATGAAATTTGTCAAAAATTCGAGAAAAATAATGTGTCACTGCTCTTTGAGCTCAATTATCTCGGCTCCTGTAAAAGATATCAAAATCTGCCAACTGATAAAATGTTGACCATAATATTTTCAATGTTTTATCAGTTAACAAATTTTTGATATATTCCACAATAACCGTGATAATTGAGCTTGTATAGTCTGACGCTATTAGTAGAACTACGCGGTTGTGATCTTGCGCCGTTGGAGTATATGAAATAGCTCATTTTTAAAAAATCCCAGTGAAATGTCCCCGGAATTTTAATAGCCTTATGCTTGAACAAATTTCCTATCATTTGAAAAATTTTATGTTTCAAGGAAACTAAAAATATGTTCACATTTCTATTTCATACATTCCAACAGTCGTAGCCCCTATCTGATGTTTCTCTATTTTTCTGGTTTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>386 233 222 110 43 6</canonical_bands>
                <polymorphic_bands>386 239 222 110 43</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>496 397 85 22</canonical_bands>
                <polymorphic_bands>518 397 85</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTTGTCTTCCCAAAAATG</pcr_primer_p1>
		<pcr_primer_p2>GACACATTATTTTTCTCGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>196</pcr_amplicon_size>
		<canonical_amplicon>CTTTTGTCTTCCCAAAAATGGAGGAAACATGGTTTTTTTTTCTGTTTCATTAGAATTAAATAAACCGATTAAACATCATTTTGACAGTAACTGTTTTCTAGAACAAATGTGACACACAGACAGACTTTGTAGACTTTCAAGGAAAATTGAGTGAAAATGATGAAATTTGTCAAAAATTCGAGAAAAATAATGTGTC</canonical_amplicon>
		<polymorphic_amplicon>CTTTTGTCTTCCCAAAAATGGAGGAAACATGGTTTTTTTTTCTGTTTCATTAGAATTAAATAAACCGATTAAACATCATTTTGACAGTAWCTGTTTTCTAGAACAAATGTGACACACAGACAGACTTTGTAGACTTTCAAGGAAAATTGAGTGAAAATGATGAAATTTGTCAAAAATTCGAGAAAAATAATGTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8107</snp_id>
        <super_contig>c004100149.Contig3</super_contig>
        <contig_pos>35929</contig_pos>
        <strand>+</strand>
        <context>ATCCAGCCAA[C/T]TGGAGACGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAACCACGTTACGGAGACCTCTGGCAAGCGATCGCCAAGAATCCAGCCAA</left_flank>
        <right_flank>TGGAGACGTTCGACAGAGGAGATTCTGCAGTTGACGACGAACAAAATCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATTGCGTTTGCAAAAAAAAACTACAAAAAGCAAGGTTGTCTACAGTAGCCTACAGTAATCTACGGTCAAGAACACCATCCCACGAAATTTCAAACGCGAGAAACCGAAAAAATCAGAAAAGAATCCTCAAAAATTGCTGAAAGCCCTAAAAATGTTTCAAAATGTTGCAAAAAATTGGAGAAAAACTCGATTTTCTTTCTTCAAAAATCGCGATAAAATGTTTTCTGAAAATAGCTAGAAATGATTCAAGATTACTCAAAGTTACCGAAATAGCCTAAAATATCCCTAAAATAGGTTAATAAAATTATAGCCCTATTGTAGCCTGTTTTAGGTCCTTTTTAAGCCATTCTCGCGATTTTCAGCAGAAATTTGAAATTTGCCCCCCATAAAAATCCCCCTTTTTTCCAGGAAGATCGCAAGGCCGTCATCAAAAAGTGTGTCAGTTCGGAACCACGTTACGGAGACCTCTGGCAAGCGATCGCCAAGAATCCAGCCAACTGGAGACGTTCGACAGAGGAGATTCTGCAGTTGACGACGAACAAAATCAAAGTCCCTACATAATTTATTTTTTAATTTTTCATTGTTTTTTGATGGATTTTTTTACAAAAGGTTTCAGATTCACTCTAAAGATCTACACTAAAAAGGGATATTTTCTACTATTTTTTTCAATTTTTTTTCTAATTTTCAGCGTTCTTCTTCAACGCAATTCTCTATTTTTTAACCTTAAAAATCCTCGTTTTTTCGCTCTCTACACTTCCGCTCTCTCCTCAATTTCACTCAATTTCCAGCTTAAAAAATCAAATGGCAGCTCAAGTGGTGAATGTGTACACGACGGCGTCGTCTGCTGATAACCTATCTCGACATGAGATGTTGATGTGGGTCAACGATTGTCTACAGGCGCACTTCACGAAGATTGAGCAGTTGCATACCGGCGCCGGATATTGTTTGGTAAGAGGGAGAGACTAGATTAGTATATGATTATAGACTTTCTTTCCCCA</canonical>
            <polymorphic>TGATTGCGTTTGCAAAAAAAAACTACAAAAAGCAAGGTTGTCTACAGTAGCCTACAGTAATCTACGGTCAAGAACACCATCCCACGAAATTTCAAACGCGAGAAACCGAAAAAATCAGAAAAGAATCCTCAAAAATTGCTGAAAGCCCTAAAAATGTTTCAAAATGTTGCAAAAAATTGGAGAAAAACTCGATTTTCTTTCTTCAAAAATCGCGATAAAATGTTTTCTGAAAATAGCTAGAAATGATTCAAGATTACTCAAAGTTACCGAAATAGCCTAAAATATCCCTAAAATAGGTTAATAAAATTATAGCCCTATTGTAGCCTGTTTTAGGTCCTTTTTAAGCCATTCTCGCGATTTTCAGCAGAAATTTGAAATTTGCCCCCCATAAAAATCCCCCTTTTTTCCAGGAAGATCGCAAGGCCGTCATCAAAAAGTGTGTCAGTTCGGAACCACGTTACGGAGACCTCTGGCAAGCGATCGCCAAGAATCCAGCCAAYTGGAGACGTTCGACAGAGGAGATTCTGCAGTTGACGACGAACAAAATCAAAGTCCCTACATAATTTATTTTTTAATTTTTCATTGTTTTTTGATGGATTTTTTTACAAAAGGTTTCAGATTCACTCTAAAGATCTACACTAAAAAGGGATATTTTCTACTATTTTTTTCAATTTTTTTTCTAATTTTCAGCGTTCTTCTTCAACGCAATTCTCTATTTTTTAACCTTAAAAATCCTCGTTTTTTCGCTCTCTACACTTCCGCTCTCTCCTCAATTTCACTCAATTTCCAGCTTAAAAAATCAAATGGCAGCTCAAGTGGTGAATGTGTACACGACGGCGTCGTCTGCTGATAACCTATCTCGACATGAGATGTTGATGTGGGTCAACGATTGTCTACAGGCGCACTTCACGAAGATTGAGCAGTTGCATACCGGCGCCGGATATTGTTTGGTAAGAGGGAGAGACTAGATTAGTATATGATTATAGACTTTCTTTCCCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTATTGTAGCCTGTTTTAGGT</pcr_primer_p1>
		<pcr_primer_p2>ACTTTGATTTTGTTCGTCGT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CCTATTGTAGCCTGTTTTAGGTCCTTTTTAAGCCATTCTCGCGATTTTCAGCAGAAATTTGAAATTTGCCCCCCATAAAAATCCCCCTTTTTTCCAGGAAGATCGCAAGGCCGTCATCAAAAAGTGTGTCAGTTCGGAACCACGTTACGGAGACCTCTGGCAAGCGATCGCCAAGAATCCAGCCAACTGGAGACGTTCGACAGAGGAGATTCTGCAGTTGACGACGAACAAAATCAAAGT</canonical_amplicon>
		<polymorphic_amplicon>CCTATTGTAGCCTGTTTTAGGTCCTTTTTAAGCCATTCTCGCGATTTTCAGCAGAAATTTGAAATTTGCCCCCCATAAAAATCCCCCTTTTTTCCAGGAAGATCGCAAGGCCGTCATCAAAAAGTGTGTCAGTTCGGAACCACGTTACGGAGACCTCTGGCAAGCGATCGCCAAGAATCCAGCCAAYTGGAGACGTTCGACAGAGGAGATTCTGCAGTTGACGACGAACAAAATCAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8129</snp_id>
        <super_contig>c004100149.Contig3</super_contig>
        <contig_pos>40758</contig_pos>
        <strand>+</strand>
        <context>GTAGCAATAA[A/G]AATGAGCAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGGCGCAAACTCCATAGACCCGGATTGGAAGGAATACGAGTAGCAATAA</left_flank>
        <right_flank>AATGAGCAATATGAAGACAAAAGGATGGCCAGGTGGATGAGATAGGAGGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCCAGATACCGTACTACTTCAGTTTTACGAGAAAGTGACATAAAATGTATTTTTCACAAAGAACTTTATTTTAAAAAAACCAAAAAAAAAAGCTCACACAGTCAACCAATCTTTAGTCTCCTCTAGCTCCGACACATCTGTCACACTGTTGTATCCCCTCTTCCAGAACAATCTGAAAATTCCAACAAAATTTTTTTCTAGACCCTTCTAAAAATCAACCTCATCAAAACCAAAAAAGCTGTTAACAGTGCTGAGTAGCCGAAAATGATGGGCATCGCGTAGGTGTGAAGTGCCAAGCTACTTTTCATCTTCTCATTTGCCACGTGGCTCTTCGAAAGGTGATCTGACAGCTCTCGGCAGGTGGTGAAGACGAGTGTGAGCAGGAGCCAGGATGTCTGAAAATCTAGTTTTAAACTTGAAGAAAAATAATTTTATCGACATTCATAAAGGCGCAAACTCCATAGACCCGGATTGGAAGGAATACGAGTAGCAATAAGAATGAGCAATATGAAGACAAAAGGATGGCCAGGTGGATGAGATAGGAGGTCACAAATTGGTCATGGTAGTTTTTGATGGGCCAGTTGATCATGATTTTTCTGGAAGAGAGGATTTTGAAGATTCAAGAGATTTGAATTCTGGATCTTTCAAACTTACATCTCATTGATGGCATAGCGGAGGAAGACAAGAATCAAGCAACCGATGGCAAAAGTGATCAAGTAGAAGATGATCTGAAACCTCTTAATTACCTTAATTACCCCCAGCTAATTAACTTACCCAATAAGAAACGCCACATGGTTTCTTGGCGTTTGGCGAATACTCATAAGTAAAACGTTCTGCTTTTTTTGATACACACATAATTTGGGAGATATCAAAAAACTCGGATTTTCGAGTTGGAGTACTGATTCTTCTGGAGGGTCTTCTGAGTTTTCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTCCACGATTTTGATGATTATAG</canonical>
            <polymorphic>TCTTCCAGATACCGTACTACTTCAGTTTTACGAGAAAGTGACATAAAATGTATTTTTCACAAAGAACTTTATTTTAAAAAAACCAAAAAAAAAAGCTCACACAGTCAACCAATCTTTAGTCTCCTCTAGCTCCGACACATCTGTCACACTGTTGTATCCCCTCTTCCAGAACAATCTGAAAATTCCAACAAAATTTTTTTCTAGACCCTTCTAAAAATCAACCTCATCAAAACCAAAAAAGCTGTTAACAGTGCTGAGTAGCCGAAAATGATGGGCATCGCGTAGGTGTGAAGTGCCAAGCTACTTTTCATCTTCTCATTTGCCACGTGGCTCTTCGAAAGGTGATCTGACAGCTCTCGGCAGGTGGTGAAGACGAGTGTGAGCAGGAGCCAGGATGTCTGAAAATCTAGTTTTAAACTTGAAGAAAAATAATTTTATCGACATTCATAAAGGCGCAAACTCCATAGACCCGGATTGGAAGGAATACGAGTAGCAATAARAATGAGCAATATGAAGACAAAAGGATGGCCAGGTGGATGAGATAGGAGGTCACAAATTGGTCATGGTAGTTTTTGATGGGCCAGTTGATCATGATTTTTCTGGAAGAGAGGATTTTGAAGATTCAAGAGATTTGAATTCTGGATCTTTCAAACTTACATCTCATTGATGGCATAGCGGAGGAAGACAAGAATCAAGCAACCGATGGCAAAAGTGATCAAGTAGAAGATGATCTGAAACCTCTTAATTACCTTAATTACCCCCAGCTAATTAACTTACCCAATAAGAAACGCCACATGGTTTCTTGGCGTTTGGCGAATACTCATAAGTAAAACGTTCTGCTTTTTTTGATACACACATAATTTGGGAGATATCAAAAAACTCGGATTTTCGAGTTGGAGTACTGATTCTTCTGGAGGGTCTTCTGAGTTTTCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTCCACGATTTTGATGATTATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTACTTTTCATCTTCTCATTTG</pcr_primer_p1>
		<pcr_primer_p2>TGACCTCCTATCTCATCCAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GCTACTTTTCATCTTCTCATTTGCCACGTGGCTCTTCGAAAGGTGATCTGACAGCTCTCGGCAGGTGGTGAAGACGAGTGTGAGCAGGAGCCAGGATGTCTGAAAATCTAGTTTTAAACTTGAAGAAAAATAATTTTATCGACATTCATAAAGGCGCAAACTCCATAGACCCGGATTGGAAGGAATACGAGTAGCAATAAGAATGAGCAATATGAAGACAAAAGGATGGCCAGGTGGATGAGATAGGAGGTCA</canonical_amplicon>
		<polymorphic_amplicon>GCTACTTTTCATCTTCTCATTTGCCACGTGGCTCTTCGAAAGGTGATCTGACAGCTCTCGGCAGGTGGTGAAGACGAGTGTGAGCAGGAGCCAGGATGTCTGAAAATCTAGTTTTAAACTTGAAGAAAAATAATTTTATCGACATTCATAAAGGCGCAAACTCCATAGACCCGGATTGGAAGGAATACGAGTAGCAATAARAATGAGCAATATGAAGACAAAAGGATGGCCAGGTGGATGAGATAGGAGGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8130</snp_id>
        <super_contig>c004100149.Contig3</super_contig>
        <contig_pos>40712</contig_pos>
        <strand>+</strand>
        <context>TTCATAAAGG[C/T]GCAAACTCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCTAGTTTTAAACTTGAAGAAAAATAATTTTATCGACATTCATAAAGG</left_flank>
        <right_flank>GCAAACTCCATAGACCCGGATTGGAAGGAATACGAGTAGCAATAAGAATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCGGGTTTTGGTGTCCTACCTCCTTCAAATTGAGAAACATCCATTTCTTCCAGATACCGTACTACTTCAGTTTTACGAGAAAGTGACATAAAATGTATTTTTCACAAAGAACTTTATTTTAAAAAAACCAAAAAAAAAAGCTCACACAGTCAACCAATCTTTAGTCTCCTCTAGCTCCGACACATCTGTCACACTGTTGTATCCCCTCTTCCAGAACAATCTGAAAATTCCAACAAAATTTTTTTCTAGACCCTTCTAAAAATCAACCTCATCAAAACCAAAAAAGCTGTTAACAGTGCTGAGTAGCCGAAAATGATGGGCATCGCGTAGGTGTGAAGTGCCAAGCTACTTTTCATCTTCTCATTTGCCACGTGGCTCTTCGAAAGGTGATCTGACAGCTCTCGGCAGGTGGTGAAGACGAGTGTGAGCAGGAGCCAGGATGTCTGAAAATCTAGTTTTAAACTTGAAGAAAAATAATTTTATCGACATTCATAAAGGCGCAAACTCCATAGACCCGGATTGGAAGGAATACGAGTAGCAATAAGAATGAGCAATATGAAGACAAAAGGATGGCCAGGTGGATGAGATAGGAGGTCACAAATTGGTCATGGTAGTTTTTGATGGGCCAGTTGATCATGATTTTTCTGGAAGAGAGGATTTTGAAGATTCAAGAGATTTGAATTCTGGATCTTTCAAACTTACATCTCATTGATGGCATAGCGGAGGAAGACAAGAATCAAGCAACCGATGGCAAAAGTGATCAAGTAGAAGATGATCTGAAACCTCTTAATTACCTTAATTACCCCCAGCTAATTAACTTACCCAATAAGAAACGCCACATGGTTTCTTGGCGTTTGGCGAATACTCATAAGTAAAACGTTCTGCTTTTTTTGATACACACATAATTTGGGAGATATCAAAAAACTCGGATTTTCGAGTTGGAGTACTGATTCTTCTGGAGGGTCTTCTGAGTTTTCAGAGAGAGAGAGAGAGAGAGAG</canonical>
            <polymorphic>GCCGGGTTTTGGTGTCCTACCTCCTTCAAATTGAGAAACATCCATTTCTTCCAGATACCGTACTACTTCAGTTTTACGAGAAAGTGACATAAAATGTATTTTTCACAAAGAACTTTATTTTAAAAAAACCAAAAAAAAAAGCTCACACAGTCAACCAATCTTTAGTCTCCTCTAGCTCCGACACATCTGTCACACTGTTGTATCCCCTCTTCCAGAACAATCTGAAAATTCCAACAAAATTTTTTTCTAGACCCTTCTAAAAATCAACCTCATCAAAACCAAAAAAGCTGTTAACAGTGCTGAGTAGCCGAAAATGATGGGCATCGCGTAGGTGTGAAGTGCCAAGCTACTTTTCATCTTCTCATTTGCCACGTGGCTCTTCGAAAGGTGATCTGACAGCTCTCGGCAGGTGGTGAAGACGAGTGTGAGCAGGAGCCAGGATGTCTGAAAATCTAGTTTTAAACTTGAAGAAAAATAATTTTATCGACATTCATAAAGGYGCAAACTCCATAGACCCGGATTGGAAGGAATACGAGTAGCAATAAGAATGAGCAATATGAAGACAAAAGGATGGCCAGGTGGATGAGATAGGAGGTCACAAATTGGTCATGGTAGTTTTTGATGGGCCAGTTGATCATGATTTTTCTGGAAGAGAGGATTTTGAAGATTCAAGAGATTTGAATTCTGGATCTTTCAAACTTACATCTCATTGATGGCATAGCGGAGGAAGACAAGAATCAAGCAACCGATGGCAAAAGTGATCAAGTAGAAGATGATCTGAAACCTCTTAATTACCTTAATTACCCCCAGCTAATTAACTTACCCAATAAGAAACGCCACATGGTTTCTTGGCGTTTGGCGAATACTCATAAGTAAAACGTTCTGCTTTTTTTGATACACACATAATTTGGGAGATATCAAAAAACTCGGATTTTCGAGTTGGAGTACTGATTCTTCTGGAGGGTCTTCTGAGTTTTCAGAGAGAGAGAGAGAGAGAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTACTTTTCATCTTCTCATTTG</pcr_primer_p1>
		<pcr_primer_p2>ACCTCCTATCTCATCCACCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCTACTTTTCATCTTCTCATTTGCCACGTGGCTCTTCGAAAGGTGATCTGACAGCTCTCGGCAGGTGGTGAAGACGAGTGTGAGCAGGAGCCAGGATGTCTGAAAATCTAGTTTTAAACTTGAAGAAAAATAATTTTATCGACATTCATAAAGGCGCAAACTCCATAGACCCGGATTGGAAGGAATACGAGTAGCAATAAGAATGAGCAATATGAAGACAAAAGGATGGCCAGGTGGATGAGATAGGAGGT</canonical_amplicon>
		<polymorphic_amplicon>GCTACTTTTCATCTTCTCATTTGCCACGTGGCTCTTCGAAAGGTGATCTGACAGCTCTCGGCAGGTGGTGAAGACGAGTGTGAGCAGGAGCCAGGATGTCTGAAAATCTAGTTTTAAACTTGAAGAAAAATAATTTTATCGACATTCATAAAGGYGCAAACTCCATAGACCCGGATTGGAAGGAATACGAGTAGCAATAAGAATGAGCAATATGAAGACAAAAGGATGGCCAGGTGGATGAGATAGGAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8131</snp_id>
        <super_contig>c004100149.Contig3</super_contig>
        <contig_pos>40667</contig_pos>
        <strand>+</strand>
        <context>CTGAAAATCT[A/G]GTTTTAAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGCAGGTGGTGAAGACGAGTGTGAGCAGGAGCCAGGATGTCTGAAAATCT</left_flank>
        <right_flank>GTTTTAAACTTGAAGAAAAATAATTTTATCGACATTCATAAAGGCGCAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGGAATTGAGATATTGGAACTCAAAGTGCATGTCGAAGCCGGCTGCCGGGTTTTGGTGTCCTACCTCCTTCAAATTGAGAAACATCCATTTCTTCCAGATACCGTACTACTTCAGTTTTACGAGAAAGTGACATAAAATGTATTTTTCACAAAGAACTTTATTTTAAAAAAACCAAAAAAAAAAGCTCACACAGTCAACCAATCTTTAGTCTCCTCTAGCTCCGACACATCTGTCACACTGTTGTATCCCCTCTTCCAGAACAATCTGAAAATTCCAACAAAATTTTTTTCTAGACCCTTCTAAAAATCAACCTCATCAAAACCAAAAAAGCTGTTAACAGTGCTGAGTAGCCGAAAATGATGGGCATCGCGTAGGTGTGAAGTGCCAAGCTACTTTTCATCTTCTCATTTGCCACGTGGCTCTTCGAAAGGTGATCTGACAGCTCTCGGCAGGTGGTGAAGACGAGTGTGAGCAGGAGCCAGGATGTCTGAAAATCTAGTTTTAAACTTGAAGAAAAATAATTTTATCGACATTCATAAAGGCGCAAACTCCATAGACCCGGATTGGAAGGAATACGAGTAGCAATAAGAATGAGCAATATGAAGACAAAAGGATGGCCAGGTGGATGAGATAGGAGGTCACAAATTGGTCATGGTAGTTTTTGATGGGCCAGTTGATCATGATTTTTCTGGAAGAGAGGATTTTGAAGATTCAAGAGATTTGAATTCTGGATCTTTCAAACTTACATCTCATTGATGGCATAGCGGAGGAAGACAAGAATCAAGCAACCGATGGCAAAAGTGATCAAGTAGAAGATGATCTGAAACCTCTTAATTACCTTAATTACCCCCAGCTAATTAACTTACCCAATAAGAAACGCCACATGGTTTCTTGGCGTTTGGCGAATACTCATAAGTAAAACGTTCTGCTTTTTTTGATACACACATAATTTGGGAGATATCAAAAAACTCGGATTTTCGAGTTGGAGTACTGATTCT</canonical>
            <polymorphic>CGGGAATTGAGATATTGGAACTCAAAGTGCATGTCGAAGCCGGCTGCCGGGTTTTGGTGTCCTACCTCCTTCAAATTGAGAAACATCCATTTCTTCCAGATACCGTACTACTTCAGTTTTACGAGAAAGTGACATAAAATGTATTTTTCACAAAGAACTTTATTTTAAAAAAACCAAAAAAAAAAGCTCACACAGTCAACCAATCTTTAGTCTCCTCTAGCTCCGACACATCTGTCACACTGTTGTATCCCCTCTTCCAGAACAATCTGAAAATTCCAACAAAATTTTTTTCTAGACCCTTCTAAAAATCAACCTCATCAAAACCAAAAAAGCTGTTAACAGTGCTGAGTAGCCGAAAATGATGGGCATCGCGTAGGTGTGAAGTGCCAAGCTACTTTTCATCTTCTCATTTGCCACGTGGCTCTTCGAAAGGTGATCTGACAGCTCTCGGCAGGTGGTGAAGACGAGTGTGAGCAGGAGCCAGGATGTCTGAAAATCTRGTTTTAAACTTGAAGAAAAATAATTTTATCGACATTCATAAAGGCGCAAACTCCATAGACCCGGATTGGAAGGAATACGAGTAGCAATAAGAATGAGCAATATGAAGACAAAAGGATGGCCAGGTGGATGAGATAGGAGGTCACAAATTGGTCATGGTAGTTTTTGATGGGCCAGTTGATCATGATTTTTCTGGAAGAGAGGATTTTGAAGATTCAAGAGATTTGAATTCTGGATCTTTCAAACTTACATCTCATTGATGGCATAGCGGAGGAAGACAAGAATCAAGCAACCGATGGCAAAAGTGATCAAGTAGAAGATGATCTGAAACCTCTTAATTACCTTAATTACCCCCAGCTAATTAACTTACCCAATAAGAAACGCCACATGGTTTCTTGGCGTTTGGCGAATACTCATAAGTAAAACGTTCTGCTTTTTTTGATACACACATAATTTGGGAGATATCAAAAAACTCGGATTTTCGAGTTGGAGTACTGATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 217 206 75</canonical_bands>
                <polymorphic_bands>708 217 75</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTACTTTTCATCTTCTCATTTG</pcr_primer_p1>
		<pcr_primer_p2>ACCTCCTATCTCATCCACCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCTACTTTTCATCTTCTCATTTGCCACGTGGCTCTTCGAAAGGTGATCTGACAGCTCTCGGCAGGTGGTGAAGACGAGTGTGAGCAGGAGCCAGGATGTCTGAAAATCTAGTTTTAAACTTGAAGAAAAATAATTTTATCGACATTCATAAAGGCGCAAACTCCATAGACCCGGATTGGAAGGAATACGAGTAGCAATAAGAATGAGCAATATGAAGACAAAAGGATGGCCAGGTGGATGAGATAGGAGGT</canonical_amplicon>
		<polymorphic_amplicon>GCTACTTTTCATCTTCTCATTTGCCACGTGGCTCTTCGAAAGGTGATCTGACAGCTCTCGGCAGGTGGTGAAGACGAGTGTGAGCAGGAGCCAGGATGTCTGAAAATCTRGTTTTAAACTTGAAGAAAAATAATTTTATCGACATTCATAAAGGCGCAAACTCCATAGACCCGGATTGGAAGGAATACGAGTAGCAATAAGAATGAGCAATATGAAGACAAAAGGATGGCCAGGTGGATGAGATAGGAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8132</snp_id>
        <super_contig>c004100149.Contig3</super_contig>
        <contig_pos>40463</contig_pos>
        <strand>+</strand>
        <context>TTTTTTCTAG[A/G]CCCTTCTAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATCCCCTCTTCCAGAACAATCTGAAAATTCCAACAAAATTTTTTTCTAG</left_flank>
        <right_flank>CCCTTCTAAAAATCAACCTCATCAAAACCAAAAAAGCTGTTAACAGTGCT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTACTGGAAAAAAGTTCGCGACTAATCCGAAAAAATGATCATTTTGAAAAATACCGAAAAACCTGTAATAGAAGGACCCGCAACTGTTATCTTTGAGTCAATGTATCTCGGTTTCTGTCAAAGATAAAAAGATGTCAACTGAAAAAATGTTTATCATAATATCATAAATATTTTATCAGTTGACATAGTTTTGATAACTTGCACGGGAATTGAGATATTGGAACTCAAAGTGCATGTCGAAGCCGGCTGCCGGGTTTTGGTGTCCTACCTCCTTCAAATTGAGAAACATCCATTTCTTCCAGATACCGTACTACTTCAGTTTTACGAGAAAGTGACATAAAATGTATTTTTCACAAAGAACTTTATTTTAAAAAAACCAAAAAAAAAAGCTCACACAGTCAACCAATCTTTAGTCTCCTCTAGCTCCGACACATCTGTCACACTGTTGTATCCCCTCTTCCAGAACAATCTGAAAATTCCAACAAAATTTTTTTCTAGACCCTTCTAAAAATCAACCTCATCAAAACCAAAAAAGCTGTTAACAGTGCTGAGTAGCCGAAAATGATGGGCATCGCGTAGGTGTGAAGTGCCAAGCTACTTTTCATCTTCTCATTTGCCACGTGGCTCTTCGAAAGGTGATCTGACAGCTCTCGGCAGGTGGTGAAGACGAGTGTGAGCAGGAGCCAGGATGTCTGAAAATCTAGTTTTAAACTTGAAGAAAAATAATTTTATCGACATTCATAAAGGCGCAAACTCCATAGACCCGGATTGGAAGGAATACGAGTAGCAATAAGAATGAGCAATATGAAGACAAAAGGATGGCCAGGTGGATGAGATAGGAGGTCACAAATTGGTCATGGTAGTTTTTGATGGGCCAGTTGATCATGATTTTTCTGGAAGAGAGGATTTTGAAGATTCAAGAGATTTGAATTCTGGATCTTTCAAACTTACATCTCATTGATGGCATAGCGGAGGAAGACAAGAATCAAGCAACCGATG</canonical>
            <polymorphic>TTTACTGGAAAAAAGTTCGCGACTAATCCGAAAAAATGATCATTTTGAAAAATACCGAAAAACCTGTAATAGAAGGACCCGCAACTGTTATCTTTGAGTCAATGTATCTCGGTTTCTGTCAAAGATAAAAAGATGTCAACTGAAAAAATGTTTATCATAATATCATAAATATTTTATCAGTTGACATAGTTTTGATAACTTGCACGGGAATTGAGATATTGGAACTCAAAGTGCATGTCGAAGCCGGCTGCCGGGTTTTGGTGTCCTACCTCCTTCAAATTGAGAAACATCCATTTCTTCCAGATACCGTACTACTTCAGTTTTACGAGAAAGTGACATAAAATGTATTTTTCACAAAGAACTTTATTTTAAAAAAACCAAAAAAAAAAGCTCACACAGTCAACCAATCTTTAGTCTCCTCTAGCTCCGACACATCTGTCACACTGTTGTATCCCCTCTTCCAGAACAATCTGAAAATTCCAACAAAATTTTTTTCTAGRCCCTTCTAAAAATCAACCTCATCAAAACCAAAAAAGCTGTTAACAGTGCTGAGTAGCCGAAAATGATGGGCATCGCGTAGGTGTGAAGTGCCAAGCTACTTTTCATCTTCTCATTTGCCACGTGGCTCTTCGAAAGGTGATCTGACAGCTCTCGGCAGGTGGTGAAGACGAGTGTGAGCAGGAGCCAGGATGTCTGAAAATCTAGTTTTAAACTTGAAGAAAAATAATTTTATCGACATTCATAAAGGCGCAAACTCCATAGACCCGGATTGGAAGGAATACGAGTAGCAATAAGAATGAGCAATATGAAGACAAAAGGATGGCCAGGTGGATGAGATAGGAGGTCACAAATTGGTCATGGTAGTTTTTGATGGGCCAGTTGATCATGATTTTTCTGGAAGAGAGGATTTTGAAGATTCAAGAGATTTGAATTCTGGATCTTTCAAACTTACATCTCATTGATGGCATAGCGGAGGAAGACAAGAATCAAGCAACCGATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>389 282 161 66 35 24 18 15 10</canonical_bands>
                <polymorphic_bands>424 282 161 66 24 18 15 10</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAATCTTTAGTCTCCTCTAGC</pcr_primer_p1>
		<pcr_primer_p2>AGAGCTGTCAGATCACCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCAATCTTTAGTCTCCTCTAGCTCCGACACATCTGTCACACTGTTGTATCCCCTCTTCCAGAACAATCTGAAAATTCCAACAAAATTTTTTTCTAGACCCTTCTAAAAATCAACCTCATCAAAACCAAAAAAGCTGTTAACAGTGCTGAGTAGCCGAAAATGATGGGCATCGCGTAGGTGTGAAGTGCCAAGCTACTTTTCATCTTCTCATTTGCCACGTGGCTCTTCGAAAGGTGATCTGACAGCTCT</canonical_amplicon>
		<polymorphic_amplicon>ACCAATCTTTAGTCTCCTCTAGCTCCGACACATCTGTCACACTGTTGTATCCCCTCTTCCAGAACAATCTGAAAATTCCAACAAAATTTTTTTCTAGRCCCTTCTAAAAATCAACCTCATCAAAACCAAAAAAGCTGTTAACAGTGCTGAGTAGCCGAAAATGATGGGCATCGCGTAGGTGTGAAGTGCCAAGCTACTTTTCATCTTCTCATTTGCCACGTGGCTCTTCGAAAGGTGATCTGACAGCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8133</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>12044</contig_pos>
        <strand>+</strand>
        <context>GAAAAATCTA[A/C]AATTGAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGTCATGGAAAATGGAAGTTTTGCAATCATTTTTAGGTTCGAAAAATCTA</left_flank>
        <right_flank>AATTGAAATTTTTATATAAAATGCGTCAGTAGACAAATGACTAGCCAGAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACACCTACCCTAAAACACCTACGCTAAAACAGCCACCCTAAAATCACCCAAAAAACAACTAGAACCTAGGTGGCCTAGGAAAAGTTTGCTGGCGTAAAGGTGGCCTAGAAAACTCACCATCCACATGCTCCACAAACTTTCTTCCCTCGCAAATGGCGTTGGCGTAGTCGGTCATCTTGCGAAGACACATTCTGGTGGCTGATCCAGCCATTCCGGTGGCTCCAGAAGTTTCCATGACGGCAACAGCGAGAATCAGAAGAAGGATTACGGCAGCCGACTTCATTTCTGAAGACGTGGTGGATCCTGAATAGTAAAACCTTAGAAAATCTCGCTATTATATACACCCAGAAGTTCCCCAGACTCCGCCCCCTTTTTTTAGAGTCTGAGTAATCTGCCTACAATTCTTTCAGACATTTAGGCTCCGCCCACTTTTCTGGAGGGGTGTGCGTCATGGAAAATGGAAGTTTTGCAATCATTTTTAGGTTCGAAAAATCTAAAATTGAAATTTTTATATAAAATGCGTCAGTAGACAAATGACTAGCCAGAAAAGTCATATGGCAATCAGTAATCAACAGGAAAAAGTCATCGTCTGTGACTGGATAAATACATATTTTTGGAATCCCTAAGTGGCGAGAGATTTTTGAATTGTGAGCTCGAATAATAATAATAAACATGTGATTCATAGACAATTTCCGGTTTTTATGGAATCTGAAAAAAAAATTCATTAACTGAAAATAATAATAAATTGCTGAAATAACTGAAATTCTGGTGGAAAAACGCTTAGAAATGACTCTGAAATCGTCTGAAAAAGGCCTAAAAAATGAAATTGGAAAAAAAATGGTATATGGTCTCAAAATGGTTAAAAATGCTTCTGAAAAATGCAGAAAAAATGGGCTAAAACTGTTTTTTAATGATCTGAAAAATTCTGGAAAAAAACGGTTAAAAATTTTTTTGAAAAGAATGATCTGAAAATGGCTTAAAATAGTCTAAAATTAAC</canonical>
            <polymorphic>AAAACACCTACCCTAAAACACCTACGCTAAAACAGCCACCCTAAAATCACCCAAAAAACAACTAGAACCTAGGTGGCCTAGGAAAAGTTTGCTGGCGTAAAGGTGGCCTAGAAAACTCACCATCCACATGCTCCACAAACTTTCTTCCCTCGCAAATGGCGTTGGCGTAGTCGGTCATCTTGCGAAGACACATTCTGGTGGCTGATCCAGCCATTCCGGTGGCTCCAGAAGTTTCCATGACGGCAACAGCGAGAATCAGAAGAAGGATTACGGCAGCCGACTTCATTTCTGAAGACGTGGTGGATCCTGAATAGTAAAACCTTAGAAAATCTCGCTATTATATACACCCAGAAGTTCCCCAGACTCCGCCCCCTTTTTTTAGAGTCTGAGTAATCTGCCTACAATTCTTTCAGACATTTAGGCTCCGCCCACTTTTCTGGAGGGGTGTGCGTCATGGAAAATGGAAGTTTTGCAATCATTTTTAGGTTCGAAAAATCTAMAATTGAAATTTTTATATAAAATGCGTCAGTAGACAAATGACTAGCCAGAAAAGTCATATGGCAATCAGTAATCAACAGGAAAAAGTCATCGTCTGTGACTGGATAAATACATATTTTTGGAATCCCTAAGTGGCGAGAGATTTTTGAATTGTGAGCTCGAATAATAATAATAAACATGTGATTCATAGACAATTTCCGGTTTTTATGGAATCTGAAAAAAAAATTCATTAACTGAAAATAATAATAAATTGCTGAAATAACTGAAATTCTGGTGGAAAAACGCTTAGAAATGACTCTGAAATCGTCTGAAAAAGGCCTAAAAAATGAAATTGGAAAAAAAATGGTATATGGTCTCAAAATGGTTAAAAATGCTTCTGAAAAATGCAGAAAAAATGGGCTAAAACTGTTTTTTAATGATCTGAAAAATTCTGGAAAAAAACGGTTAAAAATTTTTTTGAAAAGAATGATCTGAAAATGGCTTAAAATAGTCTAAAATTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTCTGAGTAATCTGCCTACAA</pcr_primer_p1>
		<pcr_primer_p2>ACTTAGGGATTCCAAAAATATGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGTCTGAGTAATCTGCCTACAATTCTTTCAGACATTTAGGCTCCGCCCACTTTTCTGGAGGGGTGTGCGTCATGGAAAATGGAAGTTTTGCAATCATTTTTAGGTTCGAAAAATCTAAAATTGAAATTTTTATATAAAATGCGTCAGTAGACAAATGACTAGCCAGAAAAGTCATATGGCAATCAGTAATCAACAGGAAAAAGTCATCGTCTGTGACTGGATAAATACATATTTTTGGAATCCCTAAGT</canonical_amplicon>
		<polymorphic_amplicon>GAGTCTGAGTAATCTGCCTACAATTCTTTCAGACATTTAGGCTCCGCCCACTTTTCTGGAGGGGTGTGCGTCATGGAAAATGGAAGTTTTGCAATCATTTTTAGGTTCGAAAAATCTAMAATTGAAATTTTTATATAAAATGCGTCAGTAGACAAATGACTAGCCAGAAAAGTCATATGGCAATCAGTAATCAACAGGAAAAAGTCATCGTCTGTGACTGGATAAATACATATTTTTGGAATCCCTAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8134</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>14117</contig_pos>
        <strand></strand>
        <context>GAAAAGAGGA[T/G]GAAGTAAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TGACAAGACGAGAGGACGAGTAGTCGGCTCTGTGAGCCAAGAAAAGAGGA</left_flank>
        <right_flank>GAAGTAAGAACATCGCGCCTGCCACGGCTCACGGAGCTACGGAGCCGCGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAGACATTCTCTTTGAGGGTCCAGCCGTCCTTTTTTCTGCTCCGTGGGGCAGGTGGACCCTCAAGAGTCACAGACATTCTCTATACACATAAACATCAGCAATGAGGGTCCAGCCGTCCTTTTCTCATCGCCGCGGCTCCCTTCCTTGCTCCGGGGTGCTCTCAGCTTCACGGCGCGAGATTGTCTCTTCGTTTAAAGGCGCATGGCGGGCTGTTATACAATAAAGAGGGTCCGGCGCGTTTGTTCGGGGCTCTTCCCGTCCTCTTGGAGCCACACACAGGAGAAATATGTGCTCTTTTTCAAGAAGCGAGAGCTGTGCTTTTTTCAGGACGAAGCACTGAGCCTCTTGGTCAGAGAGAAGGCAGGCTTACACAGAAAAGAGAGCTCCGTGTGCTCTTTTTCAAGAAGAGGACCCGAGGACGCGTGTGTCGTTCGGCGAGCAACTGCCTGACAAGACGAGAGGACGAGTAGTCGGCTCTGTGAGCCAAGAAAAGAGGATGAAGTAAGAACATCGCGCCTGCCACGGCTCACGGAGCTACGGAGCCGCGAGATGGCAAAAACACACTGACTAAATGTCAGAAAAAGAAAACGTGTCGCAAAAACGAATGAGAAACGCTGTCGCCTCTTAGAAGTGCGCTTAGGGACATCTGGACCTCAGGGTACACAGACGGACAAAAAATACGCGCACTTTGAGGTTATTTATCTCATTTCCTGTAAGAGATATCAAAAAGTGATCAACTGATAAAACATTGCTGATATTATTACATTTTTGATGTCTTCTACCGTAACTGAGCTAATTGAGCTCAAAGTGGAAGTATAGAACAGGCTTCTATCAGAGTAATTAAGTGAGTTTCATTATACGACCCCTACACCTCTGGGACTCAATTTTATACAAAAAGTTATCCATTACAAAATTGAAGCCCAATACTAGTTACATATTTTCTGAAATTTTGAAGGCAGTCGGATTAATTTGACCTACTTTTGTAAAGCTCTCTTTTT</canonical>
            <polymorphic>GCAGACATTCTCTTTGAGGGTCCAGCCGTCCTTTTTTCTGCTCCGTGGGGCAGGTGGACCCTCAAGAGTCACAGACATTCTCTATACACATAAACATCAGCAATGAGGGTCCAGCCGTCCTTTTCTCATCGCCGCGGCTCCCTTCCTTGCTCCGGGGTGCTCTCAGCTTCACGGCGCGAGATTGTCTCTTCGTTTAAAGGCGCATGGCGGGCTGTTATACAATAAAGAGGGTCCGGCGCGTTTGTTCGGGGCTCTTCCCGTCCTCTTGGAGCCACACACAGGAGAAATATGTGCTCTTTTTCAAGAAGCGAGAGCTGTGCTTTTTTCAGGACGAAGCACTGAGCCTCTTGGTCAGAGAGAAGGCAGGCTTACACAGAAAAGAGAGCTCCGTGTGCTCTTTTTCAAGAAGAGGACCCGAGGACGCGTGTGTCGTTCGGCGAGCAACTGCCTGACAAGACGAGAGGACGAGTAGTCGGCTCTGTGAGCCAAGAAAAGAGGAKGAAGTAAGAACATCGCGCCTGCCACGGCTCACGGAGCTACGGAGCCGCGAGATGGCAAAAACACACTGACTAAATGTCAGAAAAAGAAAACGTGTCGCAAAAACGAATGAGAAACGCTGTCGCCTCTTAGAAGTGCGCTTAGGGACATCTGGACCTCAGGGTACACAGACGGACAAAAAATACGCGCACTTTGAGGTTATTTATCTCATTTCCTGTAAGAGATATCAAAAAGTGATCAACTGATAAAACATTGCTGATATTATTACATTTTTGATGTCTTCTACCGTAACTGAGCTAATTGAGCTCAAAGTGGAAGTATAGAACAGGCTTCTATCAGAGTAATTAAGTGAGTTTCATTATACGACCCCTACACCTCTGGGACTCAATTTTATACAAAAAGTTATCCATTACAAAATTGAAGCCCAATACTAGTTACATATTTTCTGAAATTTTGAAGGCAGTCGGATTAATTTGACCTACTTTTGTAAAGCTCTCTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGCTTACACAGAAAAGAGAG</pcr_primer_p1>
		<pcr_primer_p2>ACGTTTTCTTTTTCTGACATTTA</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>CAGGCTTACACAGAAAAGAGAGCTCCGTGTGCTCTTTTTCAAGAAGAGGACCCGAGGACGCGTGTGTCGTTCGGCGAGCAACTGCCTGACAAGACGAGAGGACGAGTAGTCGGCTCTGTGAGCCAAGAAAAGAGGATGAAGTAAGAACATCGCGCCTGCCACGGCTCACGGAGCTACGGAGCCGCGAGATGGCAAAAACACACTGACTAAATGTCAGAAAAAGAAAACGT</canonical_amplicon>
		<polymorphic_amplicon>CAGGCTTACACAGAAAAGAGAGCTCCGTGTGCTCTTTTTCAAGAAGAGGACCCGAGGACGCGTGTGTCGTTCGGCGAGCAACTGCCTGACAAGACGAGAGGACGAGTAGTCGGCTCTGTGAGCCAAGAAAAGAGGAKGAAGTAAGAACATCGCGCCTGCCACGGCTCACGGAGCTACGGAGCCGCGAGATGGCAAAAACACACTGACTAAATGTCAGAAAAAGAAAACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8135</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>14026</contig_pos>
        <strand></strand>
        <context>TTTTCAAGAA[G/T]AGGACCCGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAGGCAGGCTTACACAGAAAAGAGAGCTCCGTGTGCTCTTTTTCAAGAA</left_flank>
        <right_flank>AGGACCCGAGGACGCGTGTGTCGTTCGGCGAGCAACTGCCTGACAAGACG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCATAAGCATTGCATAGTTTTTTTGTTGCTATTCGTTTAGTTTAGTTTCTCGAATCTTCTCCTCCCACGAAACACAACTTCCAAGAGACGCAGACATTCTCTTTGAGGGTCCAGCCGTCCTTTTTTCTGCTCCGTGGGGCAGGTGGACCCTCAAGAGTCACAGACATTCTCTATACACATAAACATCAGCAATGAGGGTCCAGCCGTCCTTTTCTCATCGCCGCGGCTCCCTTCCTTGCTCCGGGGTGCTCTCAGCTTCACGGCGCGAGATTGTCTCTTCGTTTAAAGGCGCATGGCGGGCTGTTATACAATAAAGAGGGTCCGGCGCGTTTGTTCGGGGCTCTTCCCGTCCTCTTGGAGCCACACACAGGAGAAATATGTGCTCTTTTTCAAGAAGCGAGAGCTGTGCTTTTTTCAGGACGAAGCACTGAGCCTCTTGGTCAGAGAGAAGGCAGGCTTACACAGAAAAGAGAGCTCCGTGTGCTCTTTTTCAAGAAGAGGACCCGAGGACGCGTGTGTCGTTCGGCGAGCAACTGCCTGACAAGACGAGAGGACGAGTAGTCGGCTCTGTGAGCCAAGAAAAGAGGATGAAGTAAGAACATCGCGCCTGCCACGGCTCACGGAGCTACGGAGCCGCGAGATGGCAAAAACACACTGACTAAATGTCAGAAAAAGAAAACGTGTCGCAAAAACGAATGAGAAACGCTGTCGCCTCTTAGAAGTGCGCTTAGGGACATCTGGACCTCAGGGTACACAGACGGACAAAAAATACGCGCACTTTGAGGTTATTTATCTCATTTCCTGTAAGAGATATCAAAAAGTGATCAACTGATAAAACATTGCTGATATTATTACATTTTTGATGTCTTCTACCGTAACTGAGCTAATTGAGCTCAAAGTGGAAGTATAGAACAGGCTTCTATCAGAGTAATTAAGTGAGTTTCATTATACGACCCCTACACCTCTGGGACTCAATTTTATACAAAAAGTTATCCATT</canonical>
            <polymorphic>ACTCATAAGCATTGCATAGTTTTTTTGTTGCTATTCGTTTAGTTTAGTTTCTCGAATCTTCTCCTCCCACGAAACACAACTTCCAAGAGACGCAGACATTCTCTTTGAGGGTCCAGCCGTCCTTTTTTCTGCTCCGTGGGGCAGGTGGACCCTCAAGAGTCACAGACATTCTCTATACACATAAACATCAGCAATGAGGGTCCAGCCGTCCTTTTCTCATCGCCGCGGCTCCCTTCCTTGCTCCGGGGTGCTCTCAGCTTCACGGCGCGAGATTGTCTCTTCGTTTAAAGGCGCATGGCGGGCTGTTATACAATAAAGAGGGTCCGGCGCGTTTGTTCGGGGCTCTTCCCGTCCTCTTGGAGCCACACACAGGAGAAATATGTGCTCTTTTTCAAGAAGCGAGAGCTGTGCTTTTTTCAGGACGAAGCACTGAGCCTCTTGGTCAGAGAGAAGGCAGGCTTACACAGAAAAGAGAGCTCCGTGTGCTCTTTTTCAAGAAKAGGACCCGAGGACGCGTGTGTCGTTCGGCGAGCAACTGCCTGACAAGACGAGAGGACGAGTAGTCGGCTCTGTGAGCCAAGAAAAGAGGATGAAGTAAGAACATCGCGCCTGCCACGGCTCACGGAGCTACGGAGCCGCGAGATGGCAAAAACACACTGACTAAATGTCAGAAAAAGAAAACGTGTCGCAAAAACGAATGAGAAACGCTGTCGCCTCTTAGAAGTGCGCTTAGGGACATCTGGACCTCAGGGTACACAGACGGACAAAAAATACGCGCACTTTGAGGTTATTTATCTCATTTCCTGTAAGAGATATCAAAAAGTGATCAACTGATAAAACATTGCTGATATTATTACATTTTTGATGTCTTCTACCGTAACTGAGCTAATTGAGCTCAAAGTGGAAGTATAGAACAGGCTTCTATCAGAGTAATTAAGTGAGTTTCATTATACGACCCCTACACCTCTGGGACTCAATTTTATACAAAAAGTTATCCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAATATGTGCTCTTTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>TCTTTTCTTGGCTCACAGAG</pcr_primer_p2>
		<pcr_amplicon_size>215</pcr_amplicon_size>
		<canonical_amplicon>GAGAAATATGTGCTCTTTTTCAAGAAGCGAGAGCTGTGCTTTTTTCAGGACGAAGCACTGAGCCTCTTGGTCAGAGAGAAGGCAGGCTTACACAGAAAAGAGAGCTCCGTGTGCTCTTTTTCAAGAAGAGGACCCGAGGACGCGTGTGTCGTTCGGCGAGCAACTGCCTGACAAGACGAGAGGACGAGTAGTCGGCTCTGTGAGCCAAGAAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GAGAAATATGTGCTCTTTTTCAAGAAGCGAGAGCTGTGCTTTTTTCAGGACGAAGCACTGAGCCTCTTGGTCAGAGAGAAGGCAGGCTTACACAGAAAAGAGAGCTCCGTGTGCTCTTTTTCAAGAAKAGGACCCGAGGACGCGTGTGTCGTTCGGCGAGCAACTGCCTGACAAGACGAGAGGACGAGTAGTCGGCTCTGTGAGCCAAGAAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8136</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>13742</contig_pos>
        <strand></strand>
        <context>CCGTCCTTTT[C/A]TCATCGCCGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ACATTCTCTATACACATAAACATCAGCAATGAGGGTCCAGCCGTCCTTTT</left_flank>
        <right_flank>TCATCGCCGCGGCTCCCTTCCTTGCTCCGGGGTGCTCTCAGCTTCACGGC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAACCCACCCCTTAAGTGCTCTTTGAGCTCAATTATCTAGCTTCTTCCAAATGACATCAAAAATCTGTCAACTGACAGAATATTGGTCTTATTATGATAAACATTTTGTTTGTTTATCACTTTCTGATATCTTTTACAGGAACCGAGGTAATTGGGCTCAAAGTGCACAGTACCTCTTTCTTCAATTGTTGCTGGCATTTCTAGCTATCCATTCCGTCCCTTTTCTCCAACCAAACTTTATCCCCCATTCTCACGTCTCCGTTCAACGTCTTACGACCAACAACTCATAAGCATTGCATAGTTTTTTTGTTGCTATTCGTTTAGTTTAGTTTCTCGAATCTTCTCCTCCCACGAAACACAACTTCCAAGAGACGCAGACATTCTCTTTGAGGGTCCAGCCGTCCTTTTTTCTGCTCCGTGGGGCAGGTGGACCCTCAAGAGTCACAGACATTCTCTATACACATAAACATCAGCAATGAGGGTCCAGCCGTCCTTTTCTCATCGCCGCGGCTCCCTTCCTTGCTCCGGGGTGCTCTCAGCTTCACGGCGCGAGATTGTCTCTTCGTTTAAAGGCGCATGGCGGGCTGTTATACAATAAAGAGGGTCCGGCGCGTTTGTTCGGGGCTCTTCCCGTCCTCTTGGAGCCACACACAGGAGAAATATGTGCTCTTTTTCAAGAAGCGAGAGCTGTGCTTTTTTCAGGACGAAGCACTGAGCCTCTTGGTCAGAGAGAAGGCAGGCTTACACAGAAAAGAGAGCTCCGTGTGCTCTTTTTCAAGAAGAGGACCCGAGGACGCGTGTGTCGTTCGGCGAGCAACTGCCTGACAAGACGAGAGGACGAGTAGTCGGCTCTGTGAGCCAAGAAAAGAGGATGAAGTAAGAACATCGCGCCTGCCACGGCTCACGGAGCTACGGAGCCGCGAGATGGCAAAAACACACTGACTAAATGTCAGAAAAAGAAAACGTGTCGCAAAAACGAATGAGAAACGCTGTCGCCT</canonical>
            <polymorphic>AGAAACCCACCCCTTAAGTGCTCTTTGAGCTCAATTATCTAGCTTCTTCCAAATGACATCAAAAATCTGTCAACTGACAGAATATTGGTCTTATTATGATAAACATTTTGTTTGTTTATCACTTTCTGATATCTTTTACAGGAACCGAGGTAATTGGGCTCAAAGTGCACAGTACCTCTTTCTTCAATTGTTGCTGGCATTTCTAGCTATCCATTCCGTCCCTTTTCTCCAACCAAACTTTATCCCCCATTCTCACGTCTCCGTTCAACGTCTTACGACCAACAACTCATAAGCATTGCATAGTTTTTTTGTTGCTATTCGTTTAGTTTAGTTTCTCGAATCTTCTCCTCCCACGAAACACAACTTCCAAGAGACGCAGACATTCTCTTTGAGGGTCCAGCCGTCCTTTTTTCTGCTCCGTGGGGCAGGTGGACCCTCAAGAGTCACAGACATTCTCTATACACATAAACATCAGCAATGAGGGTCCAGCCGTCCTTTTMTCATCGCCGCGGCTCCCTTCCTTGCTCCGGGGTGCTCTCAGCTTCACGGCGCGAGATTGTCTCTTCGTTTAAAGGCGCATGGCGGGCTGTTATACAATAAAGAGGGTCCGGCGCGTTTGTTCGGGGCTCTTCCCGTCCTCTTGGAGCCACACACAGGAGAAATATGTGCTCTTTTTCAAGAAGCGAGAGCTGTGCTTTTTTCAGGACGAAGCACTGAGCCTCTTGGTCAGAGAGAAGGCAGGCTTACACAGAAAAGAGAGCTCCGTGTGCTCTTTTTCAAGAAGAGGACCCGAGGACGCGTGTGTCGTTCGGCGAGCAACTGCCTGACAAGACGAGAGGACGAGTAGTCGGCTCTGTGAGCCAAGAAAAGAGGATGAAGTAAGAACATCGCGCCTGCCACGGCTCACGGAGCTACGGAGCCGCGAGATGGCAAAAACACACTGACTAAATGTCAGAAAAAGAAAACGTGTCGCAAAAACGAATGAGAAACGCTGTCGCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTAGTTTCTCGAATCTTCTCC</pcr_primer_p1>
		<pcr_primer_p2>CCTTTAAACGAAGAGACAATCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTAGTTTCTCGAATCTTCTCCTCCCACGAAACACAACTTCCAAGAGACGCAGACATTCTCTTTGAGGGTCCAGCCGTCCTTTTTTCTGCTCCGTGGGGCAGGTGGACCCTCAAGAGTCACAGACATTCTCTATACACATAAACATCAGCAATGAGGGTCCAGCCGTCCTTTTCTCATCGCCGCGGCTCCCTTCCTTGCTCCGGGGTGCTCTCAGCTTCACGGCGCGAGATTGTCTCTTCGTTTAAAGG</canonical_amplicon>
		<polymorphic_amplicon>GTTTAGTTTCTCGAATCTTCTCCTCCCACGAAACACAACTTCCAAGAGACGCAGACATTCTCTTTGAGGGTCCAGCCGTCCTTTTTTCTGCTCCGTGGGGCAGGTGGACCCTCAAGAGTCACAGACATTCTCTATACACATAAACATCAGCAATGAGGGTCCAGCCGTCCTTTTMTCATCGCCGCGGCTCCCTTCCTTGCTCCGGGGTGCTCTCAGCTTCACGGCGCGAGATTGTCTCTTCGTTTAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8137</snp_id>
        <super_contig>c004300781.Contig3</super_contig>
        <contig_pos>3599</contig_pos>
        <strand>-</strand>
        <context>AAGAGAGAGT[C/T/G/A]AGAAAATGCG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T/G/A</alleles>
        <left_flank>TTTCGAATTGCCAGAGGATGATGATGTGCAGATTCGAGCCAAGAGAGAGT</left_flank>
        <right_flank>AGAAAATGCGCTCTGTTGGACGGGAAATTTGAATTTCTAACTGAAATTTT</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAAAATTACTGTTAATTTCCAATTTTCAAAAATTCTACATTTCTTCAGTACGAGCCCCGTTCGACCCCCAACAATGAAGAGCAAGCGGAATTCAATGAGCTGGTGTACGCGTACAAAGTACACCAACGCATGATGCAACTCTCATTTTCTTCAATCGAACAATTTCTGAATGAACACAAAAATGGGACGAAAACGCTTCGAAAAATGGATCCGGAGGATGTGAAGAAGCTGTCGGAAGTGGAGTTGACTGGATTACTGTACTGGATTGAGATGCAAAAACCGTATGGAGAGATTCCGGATGACGATAAATCCATTCTTTTGCATCGATATTCGGTCAGGAAGCTGAGTTTGGACCATTTCTACAGTGCATCGAAACATCCAGAACACTGTTCGAGACGAGAATTCGTTATGAATAATTACACTTTTGTCCCAAATGATCGAACTGGTTTCGAATTGCCAGAGGATGATGATGTGCAGATTCGAGCCAAGAGAGAGTGAGAAAATGCGCTCTGTTGGACGGGAAATTTGAATTTCTAACTGAAATTTTGGTTTTTTAAAGCAAAATTGTACAAAAAATCGGAAATTGAATTCTCGATTTTTGAAATTCTTAATTTTTGCGTTTTTGGATTTTTTGACTTCTGAATTTTCGAATTTTTAGAATTCAAAATTTCTGTATTTTCGGAATTTTTGAATTTTCCATTTTTTGAATTTCTGAATTTCTGGAATTTTCTGAATTTTCCATTTTTTTGAGTTTTTGAATTTTCAGAATTTTTTGAATTTTTTGAATTTTCCTTTTTTTGAATTTTTGAATTTCTGGAATTTTCTGAATTTTCCATTTTTCAAAATTTCGGAATTTTCAGAATTTTTGTATTTTTCAATTTTGGAATTTTCCGAATTTTCAGAATTTTTGAATTTTTTTCGAATTCCCGCCAAAACTGAAAACTCTGAAAAATAGCGATTTTCAAGAAAAAACTGATTTTTTTACAACTTTTTGTGC</canonical>
            <polymorphic>TTTGAAAATTACTGTTAATTTCCAATTTTCAAAAATTCTACATTTCTTCAGTACGAGCCCCGTTCGACCCCCAACAATGAAGAGCAAGCGGAATTCAATGAGCTGGTGTACGCGTACAAAGTACACCAACGCATGATGCAACTCTCATTTTCTTCAATCGAACAATTTCTGAATGAACACAAAAATGGGACGAAAACGCTTCGAAAAATGGATCCGGAGGATGTGAAGAAGCTGTCGGAAGTGGAGTTGACTGGATTACTGTACTGGATTGAGATGCAAAAACCGTATGGAGAGATTCCGGATGACGATAAATCCATTCTTTTGCATCGATATTCGGTCAGGAAGCTGAGTTTGGACCATTTCTACAGTGCATCGAAACATCCAGAACACTGTTCGAGACGAGAATTCGTTATGAATAATTACACTTTTGTCCCAAATGATCGAACTGGTTTCGAATTGCCAGAGGATGATGATGTGCAGATTCGAGCCAAGAGAGAGTYAGAAAATGCGCTCTGTTGGACGGGAAATTTGAATTTCTAACTGAAATTTTGGTTTTTTAAAGCAAAATTGTACAAAAAATCGGAAATTGAATTCTCGATTTTTGAAATTCTTAATTTTTGCGTTTTTGGATTTTTTGACTTCTGAATTTTCGAATTTTTAGAATTCAAAATTTCTGTATTTTCGGAATTTTTGAATTTTCCATTTTTTGAATTTCTGAATTTCTGGAATTTTCTGAATTTTCCATTTTTTTGAGTTTTTGAATTTTCAGAATTTTTTGAATTTTTTGAATTTTCCTTTTTTTGAATTTTTGAATTTCTGGAATTTTCTGAATTTTCCATTTTTCAAAATTTCGGAATTTTCAGAATTTTTGTATTTTTCAATTTTGGAATTTTCCGAATTTTCAGAATTTTTGAATTTTTTTCGAATTCCCGCCAAAACTGAAAACTCTGAAAAATAGCGATTTTCAAGAAAAAACTGATTTTTTTACAACTTTTTGTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>499 127 108 54 53 46 35 23 19 18 17 1</canonical_bands>
                <polymorphic_bands>522 127 108 54 53 46 35 19 18 17 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTCTTTTGCATCGATATTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAACCAAAATTTCAGTTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CATTCTTTTGCATCGATATTCGGTCAGGAAGCTGAGTTTGGACCATTTCTACAGTGCATCGAAACATCCAGAACACTGTTCGAGACGAGAATTCGTTATGAATAATTACACTTTTGTCCCAAATGATCGAACTGGTTTCGAATTGCCAGAGGATGATGATGTGCAGATTCGAGCCAAGAGAGAGTGAGAAAATGCGCTCTGTTGGACGGGAAATTTGAATTTCTAACTGAAATTTTGGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CATTCTTTTGCATCGATATTCGGTCAGGAAGCTGAGTTTGGACCATTTCTACAGTGCATCGAAACATCCAGAACACTGTTCGAGACGAGAATTCGTTATGAATAATTACACTTTTGTCCCAAATGATCGAACTGGTTTCGAATTGCCAGAGGATGATGATGTGCAGATTCGAGCCAAGAGAGAGTYAGAAAATGCGCTCTGTTGGACGGGAAATTTGAATTTCTAACTGAAATTTTGGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8138</snp_id>
        <super_contig>c004300781.Contig3</super_contig>
        <contig_pos>32067</contig_pos>
        <strand></strand>
        <context>GTGGAATTTT[G/A]GGCTatatta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTTAGTTTCATCATTTTCGCACCATTTTCTGCATAGACAAGTGGAATTTT</left_flank>
        <right_flank>GGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGATTATTTTTTGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATTTGACTGAAATTTCACAGAGACAACCCACGGCATCGCGGTTGGGAACCTGAAAAACGCGCGCTTCTTCGCACACAAAAGTTGGCTGCGTGCCAGATTCGAAAATTTTGAAACGTGTTTTGAAAAAAACGTGAAGTTAAACGTTGTTGAGTCGCTACTCACCGAAAAGCCGCGACCGCGCGACGCGTCCAAACTTGGCGCGCTTTCCAATTTTTAAATCTAGGTTCCCTTCCGCGAGGCCGTGACAACCCATAAATAGACCTATTTTTTTCTATTCATTTTTAAAATTCCAAGATTACTGTAGACAGTATACACTGCGACAAATTGCGGACGTCGGGAAATTTCAATTTTCCGGTATTTTTGTCATCATTTCAGTCAATTTTCTCTCATTTTTAGTGGTTTTTCTTCATTTTTTCTGATTTTTCGCTAGATTTTTAGCTTCTAATCCTTAGTTTCATCATTTTCGCACCATTTTCTGCATAGACAAGTGGAATTTTGGGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGATTATTTTTTGCTGTCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAACTGTGGAGACGCAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTTAGACAAGCATAATATTGTTATGGAACGTTTTTCAGTGTTTTTTTGCCATTTTTCGTTGTGTTTTCGTTCAATTTTCTTGGTTTTTCCCCAGAATGTTGCTACTAAAATTGATTTTCTCTGTTCACTGCGTCAATTTCTATGCGGAATTCCCAAATTTCCAGCTCACCAACCTCAGAAGTCATGAAATTCAACGCAATTCATTTTTCTTCAAATTTTCTCGATTTTCAGCCGACTTTTCGGCTTCTTTTGCGAATTTCGTACTTTTAAGCTCATTTTTAACCAGAAAAACCTCAATTTTCCCTGCGAAAATGCACCACATCAGGATTTCCCTATTATAAACCTCTTCTCGT</canonical>
            <polymorphic>ATATTTGACTGAAATTTCACAGAGACAACCCACGGCATCGCGGTTGGGAACCTGAAAAACGCGCGCTTCTTCGCACACAAAAGTTGGCTGCGTGCCAGATTCGAAAATTTTGAAACGTGTTTTGAAAAAAACGTGAAGTTAAACGTTGTTGAGTCGCTACTCACCGAAAAGCCGCGACCGCGCGACGCGTCCAAACTTGGCGCGCTTTCCAATTTTTAAATCTAGGTTCCCTTCCGCGAGGCCGTGACAACCCATAAATAGACCTATTTTTTTCTATTCATTTTTAAAATTCCAAGATTACTGTAGACAGTATACACTGCGACAAATTGCGGACGTCGGGAAATTTCAATTTTCCGGTATTTTTGTCATCATTTCAGTCAATTTTCTCTCATTTTTAGTGGTTTTTCTTCATTTTTTCTGATTTTTCGCTAGATTTTTAGCTTCTAATCCTTAGTTTCATCATTTTCGCACCATTTTCTGCATAGACAAGTGGAATTTTRGGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGATTATTTTTTGCTGTCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAACTGTGGAGACGCAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTTAGACAAGCATAATATTGTTATGGAACGTTTTTCAGTGTTTTTTTGCCATTTTTCGTTGTGTTTTCGTTCAATTTTCTTGGTTTTTCCCCAGAATGTTGCTACTAAAATTGATTTTCTCTGTTCACTGCGTCAATTTCTATGCGGAATTCCCAAATTTCCAGCTCACCAACCTCAGAAGTCATGAAATTCAACGCAATTCATTTTTCTTCAAATTTTCTCGATTTTCAGCCGACTTTTCGGCTTCTTTTGCGAATTTCGTACTTTTAAGCTCATTTTTAACCAGAAAAACCTCAATTTTCCCTGCGAAAATGCACCACATCAGGATTTCCCTATTATAAACCTCTTCTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTCTAATCCTTAGTTTCATCA</pcr_primer_p1>
		<pcr_primer_p2>ACACTGAAAAACGTTCCATAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTTCTAATCCTTAGTTTCATCATTTTCGCACCATTTTCTGCATAGACAAGTGGAATTTTGGGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGATTATTTTTTGCTGTCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAACTGTGGAGACGCAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTTAGACAAGCATAATATTGTTATGGAACGTTTTTCAGTGT</canonical_amplicon>
		<polymorphic_amplicon>GCTTCTAATCCTTAGTTTCATCATTTTCGCACCATTTTCTGCATAGACAAGTGGAATTTTRGGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGATTATTTTTTGCTGTCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAACTGTGGAGACGCAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTTAGACAAGCATAATATTGTTATGGAACGTTTTTCAGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8139</snp_id>
        <super_contig>c004300781.Contig3</super_contig>
        <contig_pos>31915</contig_pos>
        <strand></strand>
        <context>GGGAAATTTC[A/C]ATTTTCCGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTACTGTAGACAGTATACACTGCGACAAATTGCGGACGTCGGGAAATTTC</left_flank>
        <right_flank>ATTTTCCGGTATTTTTGTCATCATTTCAGTCAATTTTCTCTCATTTTTAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGAGTTTTTTCTTTATTTTTAAGTCAATCTACATGCATTTCTGCAAATTTTGATGCAATAATAAATTTCACCGTACACCACCTTTAAGCCAACAAAACGGAAGTGAAAATATCACACTTGAATAAATATTTTTTGAACGATTTTTCAGCATATTTGACTGAAATTTCACAGAGACAACCCACGGCATCGCGGTTGGGAACCTGAAAAACGCGCGCTTCTTCGCACACAAAAGTTGGCTGCGTGCCAGATTCGAAAATTTTGAAACGTGTTTTGAAAAAAACGTGAAGTTAAACGTTGTTGAGTCGCTACTCACCGAAAAGCCGCGACCGCGCGACGCGTCCAAACTTGGCGCGCTTTCCAATTTTTAAATCTAGGTTCCCTTCCGCGAGGCCGTGACAACCCATAAATAGACCTATTTTTTTCTATTCATTTTTAAAATTCCAAGATTACTGTAGACAGTATACACTGCGACAAATTGCGGACGTCGGGAAATTTCAATTTTCCGGTATTTTTGTCATCATTTCAGTCAATTTTCTCTCATTTTTAGTGGTTTTTCTTCATTTTTTCTGATTTTTCGCTAGATTTTTAGCTTCTAATCCTTAGTTTCATCATTTTCGCACCATTTTCTGCATAGACAAGTGGAATTTTGGGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGATTATTTTTTGCTGTCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAACTGTGGAGACGCAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTTAGACAAGCATAATATTGTTATGGAACGTTTTTCAGTGTTTTTTTGCCATTTTTCGTTGTGTTTTCGTTCAATTTTCTTGGTTTTTCCCCAGAATGTTGCTACTAAAATTGATTTTCTCTGTTCACTGCGTCAATTTCTATGCGGAATTCCCAAATTTCCAGCTCACCAACCTCAGAAGTCATGAAATTCAACGCAATT</canonical>
            <polymorphic>TTTTGAGTTTTTTCTTTATTTTTAAGTCAATCTACATGCATTTCTGCAAATTTTGATGCAATAATAAATTTCACCGTACACCACCTTTAAGCCAACAAAACGGAAGTGAAAATATCACACTTGAATAAATATTTTTTGAACGATTTTTCAGCATATTTGACTGAAATTTCACAGAGACAACCCACGGCATCGCGGTTGGGAACCTGAAAAACGCGCGCTTCTTCGCACACAAAAGTTGGCTGCGTGCCAGATTCGAAAATTTTGAAACGTGTTTTGAAAAAAACGTGAAGTTAAACGTTGTTGAGTCGCTACTCACCGAAAAGCCGCGACCGCGCGACGCGTCCAAACTTGGCGCGCTTTCCAATTTTTAAATCTAGGTTCCCTTCCGCGAGGCCGTGACAACCCATAAATAGACCTATTTTTTTCTATTCATTTTTAAAATTCCAAGATTACTGTAGACAGTATACACTGCGACAAATTGCGGACGTCGGGAAATTTCMATTTTCCGGTATTTTTGTCATCATTTCAGTCAATTTTCTCTCATTTTTAGTGGTTTTTCTTCATTTTTTCTGATTTTTCGCTAGATTTTTAGCTTCTAATCCTTAGTTTCATCATTTTCGCACCATTTTCTGCATAGACAAGTGGAATTTTGGGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGATTATTTTTTGCTGTCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAACTGTGGAGACGCAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTTAGACAAGCATAATATTGTTATGGAACGTTTTTCAGTGTTTTTTTGCCATTTTTCGTTGTGTTTTCGTTCAATTTTCTTGGTTTTTCCCCAGAATGTTGCTACTAAAATTGATTTTCTCTGTTCACTGCGTCAATTTCTATGCGGAATTCCCAAATTTCCAGCTCACCAACCTCAGAAGTCATGAAATTCAACGCAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>226 114 105 98 93 77 48 37 36 32 32 26 18 17 13 10 8 6 4</canonical_bands>
                <polymorphic_bands>226 114 105 98 93 77 48 38 37 36 32 26 18 17 13 10 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGATTTTTCAGCATATTTGAC</pcr_primer_p1>
		<pcr_primer_p2>GAAAAACCACTAAAAATGAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>420</pcr_amplicon_size>
		<canonical_amplicon>ACGATTTTTCAGCATATTTGACTGAAATTTCACAGAGACAACCCACGGCATCGCGGTTGGGAACCTGAAAAACGCGCGCTTCTTCGCACACAAAAGTTGGCTGCGTGCCAGATTCGAAAATTTTGAAACGTGTTTTGAAAAAAACGTGAAGTTAAACGTTGTTGAGTCGCTACTCACCGAAAAGCCGCGACCGCGCGACGCGTCCAAACTTGGCGCGCTTTCCAATTTTTAAATCTAGGTTCCCTTCCGCGAGGCCGTGACAACCCATAAATAGACCTATTTTTTTCTATTCATTTTTAAAATTCCAAGATTACTGTAGACAGTATACACTGCGACAAATTGCGGACGTCGGGAAATTTCAATTTTCCGGTATTTTTGTCATCATTTCAGTCAATTTTCTCTCATTTTTAGTGGTTTTTC</canonical_amplicon>
		<polymorphic_amplicon>ACGATTTTTCAGCATATTTGACTGAAATTTCACAGAGACAACCCACGGCATCGCGGTTGGGAACCTGAAAAACGCGCGCTTCTTCGCACACAAAAGTTGGCTGCGTGCCAGATTCGAAAATTTTGAAACGTGTTTTGAAAAAAACGTGAAGTTAAACGTTGTTGAGTCGCTACTCACCGAAAAGCCGCGACCGCGCGACGCGTCCAAACTTGGCGCGCTTTCCAATTTTTAAATCTAGGTTCCCTTCCGCGAGGCCGTGACAACCCATAAATAGACCTATTTTTTTCTATTCATTTTTAAAATTCCAAGATTACTGTAGACAGTATACACTGCGACAAATTGCGGACGTCGGGAAATTTCMATTTTCCGGTATTTTTGTCATCATTTCAGTCAATTTTCTCTCATTTTTAGTGGTTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8140</snp_id>
        <super_contig>c004300781.Contig3</super_contig>
        <contig_pos>31861</contig_pos>
        <strand></strand>
        <context>TTAAAATTCC[A/G]AGATTACTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGACAACCCATAAATAGACCTATTTTTTTCTATTCATTTTTAAAATTCC</left_flank>
        <right_flank>AGATTACTGTAGACAGTATACACTGCGACAAATTGCGGACGTCGGGAAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTCCCTAAGGGCTTTCAGCGTATTTTTCGATGCATTTTCGCGATGAAGGATTTTTTTGAGTTTTTTCTTTATTTTTAAGTCAATCTACATGCATTTCTGCAAATTTTGATGCAATAATAAATTTCACCGTACACCACCTTTAAGCCAACAAAACGGAAGTGAAAATATCACACTTGAATAAATATTTTTTGAACGATTTTTCAGCATATTTGACTGAAATTTCACAGAGACAACCCACGGCATCGCGGTTGGGAACCTGAAAAACGCGCGCTTCTTCGCACACAAAAGTTGGCTGCGTGCCAGATTCGAAAATTTTGAAACGTGTTTTGAAAAAAACGTGAAGTTAAACGTTGTTGAGTCGCTACTCACCGAAAAGCCGCGACCGCGCGACGCGTCCAAACTTGGCGCGCTTTCCAATTTTTAAATCTAGGTTCCCTTCCGCGAGGCCGTGACAACCCATAAATAGACCTATTTTTTTCTATTCATTTTTAAAATTCCAAGATTACTGTAGACAGTATACACTGCGACAAATTGCGGACGTCGGGAAATTTCAATTTTCCGGTATTTTTGTCATCATTTCAGTCAATTTTCTCTCATTTTTAGTGGTTTTTCTTCATTTTTTCTGATTTTTCGCTAGATTTTTAGCTTCTAATCCTTAGTTTCATCATTTTCGCACCATTTTCTGCATAGACAAGTGGAATTTTGGGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGATTATTTTTTGCTGTCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAACTGTGGAGACGCAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTTAGACAAGCATAATATTGTTATGGAACGTTTTTCAGTGTTTTTTTGCCATTTTTCGTTGTGTTTTCGTTCAATTTTCTTGGTTTTTCCCCAGAATGTTGCTACTAAAATTGATTTTCTCTGTTCACTGCGTCAATTTCTATGCGG</canonical>
            <polymorphic>CGTCCCTAAGGGCTTTCAGCGTATTTTTCGATGCATTTTCGCGATGAAGGATTTTTTTGAGTTTTTTCTTTATTTTTAAGTCAATCTACATGCATTTCTGCAAATTTTGATGCAATAATAAATTTCACCGTACACCACCTTTAAGCCAACAAAACGGAAGTGAAAATATCACACTTGAATAAATATTTTTTGAACGATTTTTCAGCATATTTGACTGAAATTTCACAGAGACAACCCACGGCATCGCGGTTGGGAACCTGAAAAACGCGCGCTTCTTCGCACACAAAAGTTGGCTGCGTGCCAGATTCGAAAATTTTGAAACGTGTTTTGAAAAAAACGTGAAGTTAAACGTTGTTGAGTCGCTACTCACCGAAAAGCCGCGACCGCGCGACGCGTCCAAACTTGGCGCGCTTTCCAATTTTTAAATCTAGGTTCCCTTCCGCGAGGCCGTGACAACCCATAAATAGACCTATTTTTTTCTATTCATTTTTAAAATTCCRAGATTACTGTAGACAGTATACACTGCGACAAATTGCGGACGTCGGGAAATTTCAATTTTCCGGTATTTTTGTCATCATTTCAGTCAATTTTCTCTCATTTTTAGTGGTTTTTCTTCATTTTTTCTGATTTTTCGCTAGATTTTTAGCTTCTAATCCTTAGTTTCATCATTTTCGCACCATTTTCTGCATAGACAAGTGGAATTTTGGGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGATTATTTTTTGCTGTCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAACTGTGGAGACGCAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTTAGACAAGCATAATATTGTTATGGAACGTTTTTCAGTGTTTTTTTGCCATTTTTCGTTGTGTTTTCGTTCAATTTTCTTGGTTTTTCCCCAGAATGTTGCTACTAAAATTGATTTTCTCTGTTCACTGCGTCAATTTCTATGCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAACGATTTTTCAGCATA</pcr_primer_p1>
		<pcr_primer_p2>ACTGAAATGATGACAAAAATACC</pcr_primer_p2>
		<pcr_amplicon_size>396</pcr_amplicon_size>
		<canonical_amplicon>TTTGAACGATTTTTCAGCATATTTGACTGAAATTTCACAGAGACAACCCACGGCATCGCGGTTGGGAACCTGAAAAACGCGCGCTTCTTCGCACACAAAAGTTGGCTGCGTGCCAGATTCGAAAATTTTGAAACGTGTTTTGAAAAAAACGTGAAGTTAAACGTTGTTGAGTCGCTACTCACCGAAAAGCCGCGACCGCGCGACGCGTCCAAACTTGGCGCGCTTTCCAATTTTTAAATCTAGGTTCCCTTCCGCGAGGCCGTGACAACCCATAAATAGACCTATTTTTTTCTATTCATTTTTAAAATTCCAAGATTACTGTAGACAGTATACACTGCGACAAATTGCGGACGTCGGGAAATTTCAATTTTCCGGTATTTTTGTCATCATTTCAGT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAACGATTTTTCAGCATATTTGACTGAAATTTCACAGAGACAACCCACGGCATCGCGGTTGGGAACCTGAAAAACGCGCGCTTCTTCGCACACAAAAGTTGGCTGCGTGCCAGATTCGAAAATTTTGAAACGTGTTTTGAAAAAAACGTGAAGTTAAACGTTGTTGAGTCGCTACTCACCGAAAAGCCGCGACCGCGCGACGCGTCCAAACTTGGCGCGCTTTCCAATTTTTAAATCTAGGTTCCCTTCCGCGAGGCCGTGACAACCCATAAATAGACCTATTTTTTTCTATTCATTTTTAAAATTCCRAGATTACTGTAGACAGTATACACTGCGACAAATTGCGGACGTCGGGAAATTTCAATTTTCCGGTATTTTTGTCATCATTTCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8141</snp_id>
        <super_contig>c004300781.Contig3</super_contig>
        <contig_pos>31819</contig_pos>
        <strand></strand>
        <context>ccgtgACAAC[C/A]CATAAATAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GCGCTTTCCAATTTTTAAATCTAGGTTCCCTTCCGCGAGGCCGTGACAAC</left_flank>
        <right_flank>CATAAATAGACCTATTTTTTTCTATTCATTTTTAAAATTCCAAGATTACT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCGCGCGCTNTTACTCNCCGGGCGGCCTAGAAAAANCCTCGTCCCTAAGGGCTTTCAGCGTATTTTTCGATGCATTTTCGCGATGAAGGATTTTTTTGAGTTTTTTCTTTATTTTTAAGTCAATCTACATGCATTTCTGCAAATTTTGATGCAATAATAAATTTCACCGTACACCACCTTTAAGCCAACAAAACGGAAGTGAAAATATCACACTTGAATAAATATTTTTTGAACGATTTTTCAGCATATTTGACTGAAATTTCACAGAGACAACCCACGGCATCGCGGTTGGGAACCTGAAAAACGCGCGCTTCTTCGCACACAAAAGTTGGCTGCGTGCCAGATTCGAAAATTTTGAAACGTGTTTTGAAAAAAACGTGAAGTTAAACGTTGTTGAGTCGCTACTCACCGAAAAGCCGCGACCGCGCGACGCGTCCAAACTTGGCGCGCTTTCCAATTTTTAAATCTAGGTTCCCTTCCGCGAGGCCGTGACAACCCATAAATAGACCTATTTTTTTCTATTCATTTTTAAAATTCCAAGATTACTGTAGACAGTATACACTGCGACAAATTGCGGACGTCGGGAAATTTCAATTTTCCGGTATTTTTGTCATCATTTCAGTCAATTTTCTCTCATTTTTAGTGGTTTTTCTTCATTTTTTCTGATTTTTCGCTAGATTTTTAGCTTCTAATCCTTAGTTTCATCATTTTCGCACCATTTTCTGCATAGACAAGTGGAATTTTGGGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGATTATTTTTTGCTGTCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAACTGTGGAGACGCAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTTAGACAAGCATAATATTGTTATGGAACGTTTTTCAGTGTTTTTTTGCCATTTTTCGTTGTGTTTTCGTTCAATTTTCTTGGTTTTTCCCCAGAATGTTGCTAC</canonical>
            <polymorphic>AATTCGCGCGCTNTTACTCNCCGGGCGGCCTAGAAAAANCCTCGTCCCTAAGGGCTTTCAGCGTATTTTTCGATGCATTTTCGCGATGAAGGATTTTTTTGAGTTTTTTCTTTATTTTTAAGTCAATCTACATGCATTTCTGCAAATTTTGATGCAATAATAAATTTCACCGTACACCACCTTTAAGCCAACAAAACGGAAGTGAAAATATCACACTTGAATAAATATTTTTTGAACGATTTTTCAGCATATTTGACTGAAATTTCACAGAGACAACCCACGGCATCGCGGTTGGGAACCTGAAAAACGCGCGCTTCTTCGCACACAAAAGTTGGCTGCGTGCCAGATTCGAAAATTTTGAAACGTGTTTTGAAAAAAACGTGAAGTTAAACGTTGTTGAGTCGCTACTCACCGAAAAGCCGCGACCGCGCGACGCGTCCAAACTTGGCGCGCTTTCCAATTTTTAAATCTAGGTTCCCTTCCGCGAGGCCGTGACAACMCATAAATAGACCTATTTTTTTCTATTCATTTTTAAAATTCCAAGATTACTGTAGACAGTATACACTGCGACAAATTGCGGACGTCGGGAAATTTCAATTTTCCGGTATTTTTGTCATCATTTCAGTCAATTTTCTCTCATTTTTAGTGGTTTTTCTTCATTTTTTCTGATTTTTCGCTAGATTTTTAGCTTCTAATCCTTAGTTTCATCATTTTCGCACCATTTTCTGCATAGACAAGTGGAATTTTGGGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGATTATTTTTTGCTGTCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAACTGTGGAGACGCAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTTAGACAAGCATAATATTGTTATGGAACGTTTTTCAGTGTTTTTTTGCCATTTTTCGTTGTGTTTTCGTTCAATTTTCTTGGTTTTTCCCCAGAATGTTGCTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAACGATTTTTCAGCATA</pcr_primer_p1>
		<pcr_primer_p2>ACTGAAATGATGACAAAAATACC</pcr_primer_p2>
		<pcr_amplicon_size>396</pcr_amplicon_size>
		<canonical_amplicon>TTTGAACGATTTTTCAGCATATTTGACTGAAATTTCACAGAGACAACCCACGGCATCGCGGTTGGGAACCTGAAAAACGCGCGCTTCTTCGCACACAAAAGTTGGCTGCGTGCCAGATTCGAAAATTTTGAAACGTGTTTTGAAAAAAACGTGAAGTTAAACGTTGTTGAGTCGCTACTCACCGAAAAGCCGCGACCGCGCGACGCGTCCAAACTTGGCGCGCTTTCCAATTTTTAAATCTAGGTTCCCTTCCGCGAGGCCGTGACAACCCATAAATAGACCTATTTTTTTCTATTCATTTTTAAAATTCCAAGATTACTGTAGACAGTATACACTGCGACAAATTGCGGACGTCGGGAAATTTCAATTTTCCGGTATTTTTGTCATCATTTCAGT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAACGATTTTTCAGCATATTTGACTGAAATTTCACAGAGACAACCCACGGCATCGCGGTTGGGAACCTGAAAAACGCGCGCTTCTTCGCACACAAAAGTTGGCTGCGTGCCAGATTCGAAAATTTTGAAACGTGTTTTGAAAAAAACGTGAAGTTAAACGTTGTTGAGTCGCTACTCACCGAAAAGCCGCGACCGCGCGACGCGTCCAAACTTGGCGCGCTTTCCAATTTTTAAATCTAGGTTCCCTTCCGCGAGGCCGTGACAACMCATAAATAGACCTATTTTTTTCTATTCATTTTTAAAATTCCAAGATTACTGTAGACAGTATACACTGCGACAAATTGCGGACGTCGGGAAATTTCAATTTTCCGGTATTTTTGTCATCATTTCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8142</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>58735</contig_pos>
        <strand>+</strand>
        <context>CGGTGGATCA[A/G]TTATCTCATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACTGAAACACTATTAATGAATTGCTGTGATTTGTTTAATCGGTGGATCA</left_flank>
        <right_flank>TTATCTCATAAACTTGCTAATATGAGATCCGGTCGCCGCGTGAATAGCTG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAACAATCGAATGTGCACCGCAAAAAAATGCGTTCTATTCGAAAAAAAAACCCCAATAGGGACCTCAAACTGATTGATTATAAACTAAAAGTGGCCACAAAAAAAAACTAAAAGATATGATTTCAAAAAAAAACAGAAAAAAAACAGTTTCTTCTCCCAGTAAAAATGATTCCTAGCATAGTTACTCGAAGTGGTTTCAAAACTTTTACTGTTCCCTGCAGTTTAGAAAACTTTAAAAAATAATCACCTAAATGAAGTAACCATCATCAAAGTAACCGTAATCGGTTCGAGTTCTCAAATAAAGTTCGACTAAACCCTTTTAAAAAATTTTAGAAAACATGATTCCAAAAAAAAAAACAAAAAACTTGCTTTGTTCCCCCAAAAAATATTCCTACAAAATAGTTGCTTGAAATTATTTCGAAACTTTACTGTTCCTTATTGTTTAGGAAACTGAAACACTATTAATGAATTGCTGTGATTTGTTTAATCGGTGGATCAGTTATCTCATAAACTTGCTAATATGAGATCCGGTCGCCGCGTGAATAGCTGGCCATGAACCAAACCGTCCAATCTTACGGAAATAAGCTCAGCCAACCTACCCATCCCAGAAGTACCGTAACCAAAAAACTGCGGTCATGTTTCCGACAGCCTTGTTATATAAACCTTCCTGAGAGGTCAAACCTATGCCACTACTGGGAAAACTACACCGAAAGCTAAAAATATGATAAATCAAATCGCGCCGAAGGCGCACCAGCCAGCTTTTTTAAGATCTCGAGGCGCGGCAAACAAGCTGGTTCCATCTAAAACTTGAGCTGGGTAATGAAATAATTTCTCTGTTCCACATAGTTTTCAAAATGGGAACTATTTTTAAGCAGTAATTGAACCATACCAATTCGATCGAAAATCATTACGTCTATCCTAATTCTGTTTAGAAATTAAAAGTGCTGAGTCACTACTGGCTGAGCTACACTGCCCTAATTGGCTCATTTGAGTACATGA</canonical>
            <polymorphic>ACAACAATCGAATGTGCACCGCAAAAAAATGCGTTCTATTCGAAAAAAAAACCCCAATAGGGACCTCAAACTGATTGATTATAAACTAAAAGTGGCCACAAAAAAAAACTAAAAGATATGATTTCAAAAAAAAACAGAAAAAAAACAGTTTCTTCTCCCAGTAAAAATGATTCCTAGCATAGTTACTCGAAGTGGTTTCAAAACTTTTACTGTTCCCTGCAGTTTAGAAAACTTTAAAAAATAATCACCTAAATGAAGTAACCATCATCAAAGTAACCGTAATCGGTTCGAGTTCTCAAATAAAGTTCGACTAAACCCTTTTAAAAAATTTTAGAAAACATGATTCCAAAAAAAAAAACAAAAAACTTGCTTTGTTCCCCCAAAAAATATTCCTACAAAATAGTTGCTTGAAATTATTTCGAAACTTTACTGTTCCTTATTGTTTAGGAAACTGAAACACTATTAATGAATTGCTGTGATTTGTTTAATCGGTGGATCARTTATCTCATAAACTTGCTAATATGAGATCCGGTCGCCGCGTGAATAGCTGGCCATGAACCAAACCGTCCAATCTTACGGAAATAAGCTCAGCCAACCTACCCATCCCAGAAGTACCGTAACCAAAAAACTGCGGTCATGTTTCCGACAGCCTTGTTATATAAACCTTCCTGAGAGGTCAAACCTATGCCACTACTGGGAAAACTACACCGAAAGCTAAAAATATGATAAATCAAATCGCGCCGAAGGCGCACCAGCCAGCTTTTTTAAGATCTCGAGGCGCGGCAAACAAGCTGGTTCCATCTAAAACTTGAGCTGGGTAATGAAATAATTTCTCTGTTCCACATAGTTTTCAAAATGGGAACTATTTTTAAGCAGTAATTGAACCATACCAATTCGATCGAAAATCATTACGTCTATCCTAATTCTGTTTAGAAATTAAAAGTGCTGAGTCACTACTGGCTGAGCTACACTGCCCTAATTGGCTCATTTGAGTACATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAAACTTTACTGTTCCTTATTG</pcr_primer_p1>
		<pcr_primer_p2>GAAGGTTTATATAACAAGGCTGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGAAACTTTACTGTTCCTTATTGTTTAGGAAACTGAAACACTATTAATGAATTGCTGTGATTTGTTTAATCGGTGGATCAGTTATCTCATAAACTTGCTAATATGAGATCCGGTCGCCGCGTGAATAGCTGGCCATGAACCAAACCGTCCAATCTTACGGAAATAAGCTCAGCCAACCTACCCATCCCAGAAGTACCGTAACCAAAAAACTGCGGTCATGTTTCCGACAGCCTTGTTATATAAACCTTC</canonical_amplicon>
		<polymorphic_amplicon>CGAAACTTTACTGTTCCTTATTGTTTAGGAAACTGAAACACTATTAATGAATTGCTGTGATTTGTTTAATCGGTGGATCARTTATCTCATAAACTTGCTAATATGAGATCCGGTCGCCGCGTGAATAGCTGGCCATGAACCAAACCGTCCAATCTTACGGAAATAAGCTCAGCCAACCTACCCATCCCAGAAGTACCGTAACCAAAAAACTGCGGTCATGTTTCCGACAGCCTTGTTATATAAACCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8143</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>61055</contig_pos>
        <strand>+</strand>
        <context>AAATCATCTC[A/T]AACTTTCTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATAGCTTGAATAACAAAAAATGGACTGTGTCTGTTTTAAAAAATCATCTC</left_flank>
        <right_flank>AACTTTCTGAAAAAAAACTAATGTTTGTGTGTAGCTTAATCAGCAGAAAA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAAACCGAAAAAAAAGTGAGAACAAGCGAAAAAAATTTTAAAAGTTTGAATTCGCGCGCTTTTACTCACCGGGCGGCCTAGAAAAAAAAGCTCGTCCCTAAGGGCTTTCAGCCTATTTTTCGATGCGTTTTTCTCGATGAAGGAATTTTTTTCGAATTTTTTCTTTATTTTTATATCAATCTACATGCATTTCTGCACATTTTGATGCAATAAAAATTTCACCGTAGACCACCTTTAAAGACTTCTAATATTAGATTACTGTAAAAGTCATTGAAACAGTGTCAATGAAACAGCAAAAAATATTCAATTTCATAGAAATTATTTTTTCGAATTTTCTGAATAAAATAATCATAGATAAGAAAGGAAAATTTTAAAAAGTAGCCAGTTTCCAATTCTGAGTAGATTATATTCAGAAACTACACATTTAAAATTTCAGTGAAACATAGATAGCTTGAATAACAAAAAATGGACTGTGTCTGTTTTAAAAAATCATCTCTAACTTTCTGAAAAAAAACTAATGTTTGTGTGTAGCTTAATCAGCAGAAAATGTGTGTAGCTTAATCAGCAGAAAATAAGATGGTTGAGACATCTTATGAATCGTCTCTGAAACTAAAAAGATTTATACAAAATAAAGGTGAGTTTTTTGATCTTTTTTAGAACCAGAATATGAGTTCTTCACCAAAATGTTCAGTTTCATACCATTGACAAGTTCTTGTATTTTAATAATTCAATAGTAACCTTCCTACTTATGCACGAAACTAATCTGATGATATTTTGGAAAATAAATATTTGGACCCAATAGAGCGAACATCGAAAAAGTTTTCTAGAGTGCAGATTTTCATATCTCACAGAAGATGATTGAAGCGTAATTAGGACACCCTCTTCCGTTTCAGTGGAATGATGTGAAACTTGGGTACGTTACAAATTCTAACTGGACGTTGATGACAATTTTGGTTATAAAATGATGATGAAATTGGAAAAATCTGATTTCCGAAAA</canonical>
            <polymorphic>GAAAAAACCGAAAAAAAAGTGAGAACAAGCGAAAAAAATTTTAAAAGTTTGAATTCGCGCGCTTTTACTCACCGGGCGGCCTAGAAAAAAAAGCTCGTCCCTAAGGGCTTTCAGCCTATTTTTCGATGCGTTTTTCTCGATGAAGGAATTTTTTTCGAATTTTTTCTTTATTTTTATATCAATCTACATGCATTTCTGCACATTTTGATGCAATAAAAATTTCACCGTAGACCACCTTTAAAGACTTCTAATATTAGATTACTGTAAAAGTCATTGAAACAGTGTCAATGAAACAGCAAAAAATATTCAATTTCATAGAAATTATTTTTTCGAATTTTCTGAATAAAATAATCATAGATAAGAAAGGAAAATTTTAAAAAGTAGCCAGTTTCCAATTCTGAGTAGATTATATTCAGAAACTACACATTTAAAATTTCAGTGAAACATAGATAGCTTGAATAACAAAAAATGGACTGTGTCTGTTTTAAAAAATCATCTCWAACTTTCTGAAAAAAAACTAATGTTTGTGTGTAGCTTAATCAGCAGAAAATGTGTGTAGCTTAATCAGCAGAAAATAAGATGGTTGAGACATCTTATGAATCGTCTCTGAAACTAAAAAGATTTATACAAAATAAAGGTGAGTTTTTTGATCTTTTTTAGAACCAGAATATGAGTTCTTCACCAAAATGTTCAGTTTCATACCATTGACAAGTTCTTGTATTTTAATAATTCAATAGTAACCTTCCTACTTATGCACGAAACTAATCTGATGATATTTTGGAAAATAAATATTTGGACCCAATAGAGCGAACATCGAAAAAGTTTTCTAGAGTGCAGATTTTCATATCTCACAGAAGATGATTGAAGCGTAATTAGGACACCCTCTTCCGTTTCAGTGGAATGATGTGAAACTTGGGTACGTTACAAATTCTAACTGGACGTTGATGACAATTTTGGTTATAAAATGATGATGAAATTGGAAAAATCTGATTTCCGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGAATTTTCTGAATAAAATAATC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCTGCTGATTAAGCTACAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTCGAATTTTCTGAATAAAATAATCATAGATAAGAAAGGAAAATTTTAAAAAGTAGCCAGTTTCCAATTCTGAGTAGATTATATTCAGAAACTACACATTTAAAATTTCAGTGAAACATAGATAGCTTGAATAACAAAAAATGGACTGTGTCTGTTTTAAAAAATCATCTCTAACTTTCTGAAAAAAAACTAATGTTTGTGTGTAGCTTAATCAGCAGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTCGAATTTTCTGAATAAAATAATCATAGATAAGAAAGGAAAATTTTAAAAAGTAGCCAGTTTCCAATTCTGAGTAGATTATATTCAGAAACTACACATTTAAAATTTCAGTGAAACATAGATAGCTTGAATAACAAAAAATGGACTGTGTCTGTTTTAAAAAATCATCTCWAACTTTCTGAAAAAAAACTAATGTTTGTGTGTAGCTTAATCAGCAGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8144</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>60996</contig_pos>
        <strand>+</strand>
        <context>AAATTTCAGT[A/G]AAACATAGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCAATTCTGAGTAGATTATATTCAGAAACTACACATTTAAAATTTCAGT</left_flank>
        <right_flank>AAACATAGATAGCTTGAATAACAAAAAATGGACTGTGTCTGTTTTAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTCAACTTTTTCGATGTATCTGGAAGAAAAATTGACAAAAACCTTGAAAGATCTTGAAAAAACCGAAAAAAAAGTGAGAACAAGCGAAAAAAATTTTAAAAGTTTGAATTCGCGCGCTTTTACTCACCGGGCGGCCTAGAAAAAAAAGCTCGTCCCTAAGGGCTTTCAGCCTATTTTTCGATGCGTTTTTCTCGATGAAGGAATTTTTTTCGAATTTTTTCTTTATTTTTATATCAATCTACATGCATTTCTGCACATTTTGATGCAATAAAAATTTCACCGTAGACCACCTTTAAAGACTTCTAATATTAGATTACTGTAAAAGTCATTGAAACAGTGTCAATGAAACAGCAAAAAATATTCAATTTCATAGAAATTATTTTTTCGAATTTTCTGAATAAAATAATCATAGATAAGAAAGGAAAATTTTAAAAAGTAGCCAGTTTCCAATTCTGAGTAGATTATATTCAGAAACTACACATTTAAAATTTCAGTGAAACATAGATAGCTTGAATAACAAAAAATGGACTGTGTCTGTTTTAAAAAATCATCTCTAACTTTCTGAAAAAAAACTAATGTTTGTGTGTAGCTTAATCAGCAGAAAATGTGTGTAGCTTAATCAGCAGAAAATAAGATGGTTGAGACATCTTATGAATCGTCTCTGAAACTAAAAAGATTTATACAAAATAAAGGTGAGTTTTTTGATCTTTTTTAGAACCAGAATATGAGTTCTTCACCAAAATGTTCAGTTTCATACCATTGACAAGTTCTTGTATTTTAATAATTCAATAGTAACCTTCCTACTTATGCACGAAACTAATCTGATGATATTTTGGAAAATAAATATTTGGACCCAATAGAGCGAACATCGAAAAAGTTTTCTAGAGTGCAGATTTTCATATCTCACAGAAGATGATTGAAGCGTAATTAGGACACCCTCTTCCGTTTCAGTGGAATGATGTGAAACTTGGGTACGTTACAAATTCTAACTGGACG</canonical>
            <polymorphic>TTTTTTCAACTTTTTCGATGTATCTGGAAGAAAAATTGACAAAAACCTTGAAAGATCTTGAAAAAACCGAAAAAAAAGTGAGAACAAGCGAAAAAAATTTTAAAAGTTTGAATTCGCGCGCTTTTACTCACCGGGCGGCCTAGAAAAAAAAGCTCGTCCCTAAGGGCTTTCAGCCTATTTTTCGATGCGTTTTTCTCGATGAAGGAATTTTTTTCGAATTTTTTCTTTATTTTTATATCAATCTACATGCATTTCTGCACATTTTGATGCAATAAAAATTTCACCGTAGACCACCTTTAAAGACTTCTAATATTAGATTACTGTAAAAGTCATTGAAACAGTGTCAATGAAACAGCAAAAAATATTCAATTTCATAGAAATTATTTTTTCGAATTTTCTGAATAAAATAATCATAGATAAGAAAGGAAAATTTTAAAAAGTAGCCAGTTTCCAATTCTGAGTAGATTATATTCAGAAACTACACATTTAAAATTTCAGTRAAACATAGATAGCTTGAATAACAAAAAATGGACTGTGTCTGTTTTAAAAAATCATCTCTAACTTTCTGAAAAAAAACTAATGTTTGTGTGTAGCTTAATCAGCAGAAAATGTGTGTAGCTTAATCAGCAGAAAATAAGATGGTTGAGACATCTTATGAATCGTCTCTGAAACTAAAAAGATTTATACAAAATAAAGGTGAGTTTTTTGATCTTTTTTAGAACCAGAATATGAGTTCTTCACCAAAATGTTCAGTTTCATACCATTGACAAGTTCTTGTATTTTAATAATTCAATAGTAACCTTCCTACTTATGCACGAAACTAATCTGATGATATTTTGGAAAATAAATATTTGGACCCAATAGAGCGAACATCGAAAAAGTTTTCTAGAGTGCAGATTTTCATATCTCACAGAAGATGATTGAAGCGTAATTAGGACACCCTCTTCCGTTTCAGTGGAATGATGTGAAACTTGGGTACGTTACAAATTCTAACTGGACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>140 129 84 80 78 75 51 50 50 41 37 33 29 24 23 18 17 17 10 10 2 2</canonical_bands>
                <polymorphic_bands>140 129 84 80 78 75 54 51 50 50 41 33 29 24 23 18 17 10 10 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCGAATTTTCTGAATAAAATAATC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCTGCTGATTAAGCTACAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTCGAATTTTCTGAATAAAATAATCATAGATAAGAAAGGAAAATTTTAAAAAGTAGCCAGTTTCCAATTCTGAGTAGATTATATTCAGAAACTACACATTTAAAATTTCAGTGAAACATAGATAGCTTGAATAACAAAAAATGGACTGTGTCTGTTTTAAAAAATCATCTCTAACTTTCTGAAAAAAAACTAATGTTTGTGTGTAGCTTAATCAGCAGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTCGAATTTTCTGAATAAAATAATCATAGATAAGAAAGGAAAATTTTAAAAAGTAGCCAGTTTCCAATTCTGAGTAGATTATATTCAGAAACTACACATTTAAAATTTCAGTRAAACATAGATAGCTTGAATAACAAAAAATGGACTGTGTCTGTTTTAAAAAATCATCTCTAACTTTCTGAAAAAAAACTAATGTTTGTGTGTAGCTTAATCAGCAGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8145</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>60943</contig_pos>
        <strand>+</strand>
        <context>AAAGTAGCCA[A/G]TTTCCAATTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGAATAAAATAATCATAGATAAGAAAGGAAAATTTTAAAAAGTAGCCA</left_flank>
        <right_flank>TTTCCAATTCTGAGTAGATTATATTCAGAAACTACACATTTAAAATTTCA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTAAAAGCGCGCGAATTCAAACTTTTAAAATTTTTTTTGTTCGTTTTCAATGTTTTTTCAACTTTTTCGATGTATCTGGAAGAAAAATTGACAAAAACCTTGAAAGATCTTGAAAAAACCGAAAAAAAAGTGAGAACAAGCGAAAAAAATTTTAAAAGTTTGAATTCGCGCGCTTTTACTCACCGGGCGGCCTAGAAAAAAAAGCTCGTCCCTAAGGGCTTTCAGCCTATTTTTCGATGCGTTTTTCTCGATGAAGGAATTTTTTTCGAATTTTTTCTTTATTTTTATATCAATCTACATGCATTTCTGCACATTTTGATGCAATAAAAATTTCACCGTAGACCACCTTTAAAGACTTCTAATATTAGATTACTGTAAAAGTCATTGAAACAGTGTCAATGAAACAGCAAAAAATATTCAATTTCATAGAAATTATTTTTTCGAATTTTCTGAATAAAATAATCATAGATAAGAAAGGAAAATTTTAAAAAGTAGCCAGTTTCCAATTCTGAGTAGATTATATTCAGAAACTACACATTTAAAATTTCAGTGAAACATAGATAGCTTGAATAACAAAAAATGGACTGTGTCTGTTTTAAAAAATCATCTCTAACTTTCTGAAAAAAAACTAATGTTTGTGTGTAGCTTAATCAGCAGAAAATGTGTGTAGCTTAATCAGCAGAAAATAAGATGGTTGAGACATCTTATGAATCGTCTCTGAAACTAAAAAGATTTATACAAAATAAAGGTGAGTTTTTTGATCTTTTTTAGAACCAGAATATGAGTTCTTCACCAAAATGTTCAGTTTCATACCATTGACAAGTTCTTGTATTTTAATAATTCAATAGTAACCTTCCTACTTATGCACGAAACTAATCTGATGATATTTTGGAAAATAAATATTTGGACCCAATAGAGCGAACATCGAAAAAGTTTTCTAGAGTGCAGATTTTCATATCTCACAGAAGATGATTGAAGCGTAATTAGGACACCCTCTTC</canonical>
            <polymorphic>AGTAAAAGCGCGCGAATTCAAACTTTTAAAATTTTTTTTGTTCGTTTTCAATGTTTTTTCAACTTTTTCGATGTATCTGGAAGAAAAATTGACAAAAACCTTGAAAGATCTTGAAAAAACCGAAAAAAAAGTGAGAACAAGCGAAAAAAATTTTAAAAGTTTGAATTCGCGCGCTTTTACTCACCGGGCGGCCTAGAAAAAAAAGCTCGTCCCTAAGGGCTTTCAGCCTATTTTTCGATGCGTTTTTCTCGATGAAGGAATTTTTTTCGAATTTTTTCTTTATTTTTATATCAATCTACATGCATTTCTGCACATTTTGATGCAATAAAAATTTCACCGTAGACCACCTTTAAAGACTTCTAATATTAGATTACTGTAAAAGTCATTGAAACAGTGTCAATGAAACAGCAAAAAATATTCAATTTCATAGAAATTATTTTTTCGAATTTTCTGAATAAAATAATCATAGATAAGAAAGGAAAATTTTAAAAAGTAGCCARTTTCCAATTCTGAGTAGATTATATTCAGAAACTACACATTTAAAATTTCAGTGAAACATAGATAGCTTGAATAACAAAAAATGGACTGTGTCTGTTTTAAAAAATCATCTCTAACTTTCTGAAAAAAAACTAATGTTTGTGTGTAGCTTAATCAGCAGAAAATGTGTGTAGCTTAATCAGCAGAAAATAAGATGGTTGAGACATCTTATGAATCGTCTCTGAAACTAAAAAGATTTATACAAAATAAAGGTGAGTTTTTTGATCTTTTTTAGAACCAGAATATGAGTTCTTCACCAAAATGTTCAGTTTCATACCATTGACAAGTTCTTGTATTTTAATAATTCAATAGTAACCTTCCTACTTATGCACGAAACTAATCTGATGATATTTTGGAAAATAAATATTTGGACCCAATAGAGCGAACATCGAAAAAGTTTTCTAGAGTGCAGATTTTCATATCTCACAGAAGATGATTGAAGCGTAATTAGGACACCCTCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGAATTTTCTGAATAAAATAATC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCTGCTGATTAAGCTACAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTCGAATTTTCTGAATAAAATAATCATAGATAAGAAAGGAAAATTTTAAAAAGTAGCCAGTTTCCAATTCTGAGTAGATTATATTCAGAAACTACACATTTAAAATTTCAGTGAAACATAGATAGCTTGAATAACAAAAAATGGACTGTGTCTGTTTTAAAAAATCATCTCTAACTTTCTGAAAAAAAACTAATGTTTGTGTGTAGCTTAATCAGCAGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTCGAATTTTCTGAATAAAATAATCATAGATAAGAAAGGAAAATTTTAAAAAGTAGCCARTTTCCAATTCTGAGTAGATTATATTCAGAAACTACACATTTAAAATTTCAGTGAAACATAGATAGCTTGAATAACAAAAAATGGACTGTGTCTGTTTTAAAAAATCATCTCTAACTTTCTGAAAAAAAACTAATGTTTGTGTGTAGCTTAATCAGCAGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8146</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>60825</contig_pos>
        <strand>+</strand>
        <context>TACTGTAAAA[A/G]TCATTGAAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCACCGTAGACCACCTTTAAAGACTTCTAATATTAGATTACTGTAAAA</left_flank>
        <right_flank>TCATTGAAACAGTGTCAATGAAACAGCAAAAAATATTCAATTTCATAGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTAGATTGATATAAAAATAAAGAAAAAATTCGAAAAAAAGTCCTTCATCGAGAAAAACGCATCGAAAAATACGCTGAAAGCCCTTAGGGACGAGGTTTTTTCTAGGCCGCCCGGTGAGTAAAAGCGCGCGAATTCAAACTTTTAAAATTTTTTTTGTTCGTTTTCAATGTTTTTTCAACTTTTTCGATGTATCTGGAAGAAAAATTGACAAAAACCTTGAAAGATCTTGAAAAAACCGAAAAAAAAGTGAGAACAAGCGAAAAAAATTTTAAAAGTTTGAATTCGCGCGCTTTTACTCACCGGGCGGCCTAGAAAAAAAAGCTCGTCCCTAAGGGCTTTCAGCCTATTTTTCGATGCGTTTTTCTCGATGAAGGAATTTTTTTCGAATTTTTTCTTTATTTTTATATCAATCTACATGCATTTCTGCACATTTTGATGCAATAAAAATTTCACCGTAGACCACCTTTAAAGACTTCTAATATTAGATTACTGTAAAAGTCATTGAAACAGTGTCAATGAAACAGCAAAAAATATTCAATTTCATAGAAATTATTTTTTCGAATTTTCTGAATAAAATAATCATAGATAAGAAAGGAAAATTTTAAAAAGTAGCCAGTTTCCAATTCTGAGTAGATTATATTCAGAAACTACACATTTAAAATTTCAGTGAAACATAGATAGCTTGAATAACAAAAAATGGACTGTGTCTGTTTTAAAAAATCATCTCTAACTTTCTGAAAAAAAACTAATGTTTGTGTGTAGCTTAATCAGCAGAAAATGTGTGTAGCTTAATCAGCAGAAAATAAGATGGTTGAGACATCTTATGAATCGTCTCTGAAACTAAAAAGATTTATACAAAATAAAGGTGAGTTTTTTGATCTTTTTTAGAACCAGAATATGAGTTCTTCACCAAAATGTTCAGTTTCATACCATTGACAAGTTCTTGTATTTTAATAATTCAATAGTAACCTTCCTACTTATGCACGAAACTAATCTGA</canonical>
            <polymorphic>ATGTAGATTGATATAAAAATAAAGAAAAAATTCGAAAAAAAGTCCTTCATCGAGAAAAACGCATCGAAAAATACGCTGAAAGCCCTTAGGGACGAGGTTTTTTCTAGGCCGCCCGGTGAGTAAAAGCGCGCGAATTCAAACTTTTAAAATTTTTTTTGTTCGTTTTCAATGTTTTTTCAACTTTTTCGATGTATCTGGAAGAAAAATTGACAAAAACCTTGAAAGATCTTGAAAAAACCGAAAAAAAAGTGAGAACAAGCGAAAAAAATTTTAAAAGTTTGAATTCGCGCGCTTTTACTCACCGGGCGGCCTAGAAAAAAAAGCTCGTCCCTAAGGGCTTTCAGCCTATTTTTCGATGCGTTTTTCTCGATGAAGGAATTTTTTTCGAATTTTTTCTTTATTTTTATATCAATCTACATGCATTTCTGCACATTTTGATGCAATAAAAATTTCACCGTAGACCACCTTTAAAGACTTCTAATATTAGATTACTGTAAAARTCATTGAAACAGTGTCAATGAAACAGCAAAAAATATTCAATTTCATAGAAATTATTTTTTCGAATTTTCTGAATAAAATAATCATAGATAAGAAAGGAAAATTTTAAAAAGTAGCCAGTTTCCAATTCTGAGTAGATTATATTCAGAAACTACACATTTAAAATTTCAGTGAAACATAGATAGCTTGAATAACAAAAAATGGACTGTGTCTGTTTTAAAAAATCATCTCTAACTTTCTGAAAAAAAACTAATGTTTGTGTGTAGCTTAATCAGCAGAAAATGTGTGTAGCTTAATCAGCAGAAAATAAGATGGTTGAGACATCTTATGAATCGTCTCTGAAACTAAAAAGATTTATACAAAATAAAGGTGAGTTTTTTGATCTTTTTTAGAACCAGAATATGAGTTCTTCACCAAAATGTTCAGTTTCATACCATTGACAAGTTCTTGTATTTTAATAATTCAATAGTAACCTTCCTACTTATGCACGAAACTAATCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTAATAACTTTGAAAACTTTGTGA</pcr_primer_p1>
		<pcr_primer_p2>GCTACTTTTTAAAATTTTCCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>675</pcr_amplicon_size>
		<canonical_amplicon>AGTCATTGAAACAGTGTCAATGAAACAGCAAAAAATATTCAATTTCATAGAAATTATTTTTTCGAATTTTCTGAATAAAATAATCATAGATAAGAAAGGAAAATTTTAAAAAGTAGC</canonical_amplicon>
		<polymorphic_amplicon>ARTCATTGAAACAGTGTCAATGAAACAGCAAAAAATATTCAATTTCATAGAAATTATTTTTTCGAATTTTCTGAATAAAATAATCATAGATAAGAAAGGAAAATTTTAAAAAGTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8147</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>106272</contig_pos>
        <strand>+</strand>
        <context>ACAGTTTTCT[A/G]GAAAATGAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTCTTTCCGTGATTAAATAGCTGCGATAACAGAAGAAGAACAGTTTTCT</left_flank>
        <right_flank>GAAAATGAGAGAAAATTGGTGAAAGATACGTACTTATTAGAAGAGAAATG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCTGTGAACTAAGTTACATTCTATAAGACTGCCCATCCGTTCCGAGCCGGGCCCAGTCTGTGTCGTCGACTCGCCATAACTTCGTTCATAAACATGATACAGTTTTCCGAGTATTATCATTTCGTAGTACTCGTCGAGTTCTGCCGTATCTAATTTATAATTGGTCAAAACATATTGGTTCTAAAAGGAACTATAATAAAGCCCGTCAGGGCCCGGATATGGCCGGTTTTCATTCTTACATCTGACTAACTAGGAACGTTTTACCAAAACCAAGCACCGTACCAAGCTTTACGGAAGGGCACCTGAAAAAAGAGCTGCAGTAGAAATTCTGCTGCTTCATAAGATCCACAAATCGCTTAATAGACAAAATCGCTTAATAGACAAAAGCTAGACAAATCGCTTAACAATGCTTAAACGGTACGGCTAGTTGGCGAGCGTCAAAAATAGGGTCTTTCCGTGATTAAATAGCTGCGATAACAGAAGAAGAACAGTTTTCTGGAAAATGAGAGAAAATTGGTGAAAGATACGTACTTATTAGAAGAGAAATGAAAGAAGTAACCTAGATTCTTATATACGTCTTATTTATCGTGATAAAAGAGATGCAGGCATAAAGAGTCTCTAACGCATTATTAGGGACAAATCAATAATTCTAAGGTTAAAAAAACGATCTAAAAGGAAGAGTGACGACCTAAAAGAAAGAGGGACGATCACAACTAAATGAAAGAAACTAAGTGAGTGAGGCAAATGACTGGCCTTTGTGGTCCGCCTGACTGCGCGGAATGTGGATAAGCGCGCAACTGAATTGGTCATTGCGCGTCGTTGTGTTTGCGTACGCAATCTGAATCAGAATATTCTAGAAAACGCTAAAATGTGTCGTCAAATACATGACATCACAGTAGTCATGACATTGCGGATAGAATGCGATGGCTCATTTTTGCTGTAGTGGAGTTCACCTACTGATATGAAACTAAATTCTTTGTGTTTCATCCTTAACAAAT</canonical>
            <polymorphic>TGTCTGTGAACTAAGTTACATTCTATAAGACTGCCCATCCGTTCCGAGCCGGGCCCAGTCTGTGTCGTCGACTCGCCATAACTTCGTTCATAAACATGATACAGTTTTCCGAGTATTATCATTTCGTAGTACTCGTCGAGTTCTGCCGTATCTAATTTATAATTGGTCAAAACATATTGGTTCTAAAAGGAACTATAATAAAGCCCGTCAGGGCCCGGATATGGCCGGTTTTCATTCTTACATCTGACTAACTAGGAACGTTTTACCAAAACCAAGCACCGTACCAAGCTTTACGGAAGGGCACCTGAAAAAAGAGCTGCAGTAGAAATTCTGCTGCTTCATAAGATCCACAAATCGCTTAATAGACAAAATCGCTTAATAGACAAAAGCTAGACAAATCGCTTAACAATGCTTAAACGGTACGGCTAGTTGGCGAGCGTCAAAAATAGGGTCTTTCCGTGATTAAATAGCTGCGATAACAGAAGAAGAACAGTTTTCTRGAAAATGAGAGAAAATTGGTGAAAGATACGTACTTATTAGAAGAGAAATGAAAGAAGTAACCTAGATTCTTATATACGTCTTATTTATCGTGATAAAAGAGATGCAGGCATAAAGAGTCTCTAACGCATTATTAGGGACAAATCAATAATTCTAAGGTTAAAAAAACGATCTAAAAGGAAGAGTGACGACCTAAAAGAAAGAGGGACGATCACAACTAAATGAAAGAAACTAAGTGAGTGAGGCAAATGACTGGCCTTTGTGGTCCGCCTGACTGCGCGGAATGTGGATAAGCGCGCAACTGAATTGGTCATTGCGCGTCGTTGTGTTTGCGTACGCAATCTGAATCAGAATATTCTAGAAAACGCTAAAATGTGTCGTCAAATACATGACATCACAGTAGTCATGACATTGCGGATAGAATGCGATGGCTCATTTTTGCTGTAGTGGAGTTCACCTACTGATATGAAACTAAATTCTTTGTGTTTCATCCTTAACAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGACAAATCGCTTAACAATG</pcr_primer_p1>
		<pcr_primer_p2>TCCCTAATAATGCGTTAGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTAGACAAATCGCTTAACAATGCTTAAACGGTACGGCTAGTTGGCGAGCGTCAAAAATAGGGTCTTTCCGTGATTAAATAGCTGCGATAACAGAAGAAGAACAGTTTTCTGGAAAATGAGAGAAAATTGGTGAAAGATACGTACTTATTAGAAGAGAAATGAAAGAAGTAACCTAGATTCTTATATACGTCTTATTTATCGTGATAAAAGAGATGCAGGCATAAAGAGTCTCTAACGCATTATTAGGGA</canonical_amplicon>
		<polymorphic_amplicon>CTAGACAAATCGCTTAACAATGCTTAAACGGTACGGCTAGTTGGCGAGCGTCAAAAATAGGGTCTTTCCGTGATTAAATAGCTGCGATAACAGAAGAAGAACAGTTTTCTRGAAAATGAGAGAAAATTGGTGAAAGATACGTACTTATTAGAAGAGAAATGAAAGAAGTAACCTAGATTCTTATATACGTCTTATTTATCGTGATAAAAGAGATGCAGGCATAAAGAGTCTCTAACGCATTATTAGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8148</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>106375</contig_pos>
        <strand>+</strand>
        <context>ATAAAAGAGA[C/T]GCAGGCATAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAGTAACCTAGATTCTTATATACGTCTTATTTATCGTGATAAAAGAGA</left_flank>
        <right_flank>GCAGGCATAAAGAGTCTCTAACGCATTATTAGGGACAAATCAATAATTCT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTCCGAGTATTATCATTTCGTAGTACTCGTCGAGTTCTGCCGTATCTAATTTATAATTGGTCAAAACATATTGGTTCTAAAAGGAACTATAATAAAGCCCGTCAGGGCCCGGATATGGCCGGTTTTCATTCTTACATCTGACTAACTAGGAACGTTTTACCAAAACCAAGCACCGTACCAAGCTTTACGGAAGGGCACCTGAAAAAAGAGCTGCAGTAGAAATTCTGCTGCTTCATAAGATCCACAAATCGCTTAATAGACAAAATCGCTTAATAGACAAAAGCTAGACAAATCGCTTAACAATGCTTAAACGGTACGGCTAGTTGGCGAGCGTCAAAAATAGGGTCTTTCCGTGATTAAATAGCTGCGATAACAGAAGAAGAACAGTTTTCTGGAAAATGAGAGAAAATTGGTGAAAGATACGTACTTATTAGAAGAGAAATGAAAGAAGTAACCTAGATTCTTATATACGTCTTATTTATCGTGATAAAAGAGATGCAGGCATAAAGAGTCTCTAACGCATTATTAGGGACAAATCAATAATTCTAAGGTTAAAAAAACGATCTAAAAGGAAGAGTGACGACCTAAAAGAAAGAGGGACGATCACAACTAAATGAAAGAAACTAAGTGAGTGAGGCAAATGACTGGCCTTTGTGGTCCGCCTGACTGCGCGGAATGTGGATAAGCGCGCAACTGAATTGGTCATTGCGCGTCGTTGTGTTTGCGTACGCAATCTGAATCAGAATATTCTAGAAAACGCTAAAATGTGTCGTCAAATACATGACATCACAGTAGTCATGACATTGCGGATAGAATGCGATGGCTCATTTTTGCTGTAGTGGAGTTCACCTACTGATATGAAACTAAATTCTTTGTGTTTCATCCTTAACAAATTGAATGTTAGCCTTATATAGCATTCATTCACACATCACATCAATTCTTGAAACATTCTTTCTCTCGCATTTTTATCAAATTTGCATAACAATGTGAACATTTC</canonical>
            <polymorphic>GTTTTCCGAGTATTATCATTTCGTAGTACTCGTCGAGTTCTGCCGTATCTAATTTATAATTGGTCAAAACATATTGGTTCTAAAAGGAACTATAATAAAGCCCGTCAGGGCCCGGATATGGCCGGTTTTCATTCTTACATCTGACTAACTAGGAACGTTTTACCAAAACCAAGCACCGTACCAAGCTTTACGGAAGGGCACCTGAAAAAAGAGCTGCAGTAGAAATTCTGCTGCTTCATAAGATCCACAAATCGCTTAATAGACAAAATCGCTTAATAGACAAAAGCTAGACAAATCGCTTAACAATGCTTAAACGGTACGGCTAGTTGGCGAGCGTCAAAAATAGGGTCTTTCCGTGATTAAATAGCTGCGATAACAGAAGAAGAACAGTTTTCTGGAAAATGAGAGAAAATTGGTGAAAGATACGTACTTATTAGAAGAGAAATGAAAGAAGTAACCTAGATTCTTATATACGTCTTATTTATCGTGATAAAAGAGAYGCAGGCATAAAGAGTCTCTAACGCATTATTAGGGACAAATCAATAATTCTAAGGTTAAAAAAACGATCTAAAAGGAAGAGTGACGACCTAAAAGAAAGAGGGACGATCACAACTAAATGAAAGAAACTAAGTGAGTGAGGCAAATGACTGGCCTTTGTGGTCCGCCTGACTGCGCGGAATGTGGATAAGCGCGCAACTGAATTGGTCATTGCGCGTCGTTGTGTTTGCGTACGCAATCTGAATCAGAATATTCTAGAAAACGCTAAAATGTGTCGTCAAATACATGACATCACAGTAGTCATGACATTGCGGATAGAATGCGATGGCTCATTTTTGCTGTAGTGGAGTTCACCTACTGATATGAAACTAAATTCTTTGTGTTTCATCCTTAACAAATTGAATGTTAGCCTTATATAGCATTCATTCACACATCACATCAATTCTTGAAACATTCTTTCTCTCGCATTTTTATCAAATTTGCATAACAATGTGAACATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>479 285 216 20</canonical_bands>
                <polymorphic_bands>764 216 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTAAATAGCTGCGATAACAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCTTTCTTTTAGGTCGTCACTC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATTAAATAGCTGCGATAACAGAAGAAGAACAGTTTTCTGGAAAATGAGAGAAAATTGGTGAAAGATACGTACTTATTAGAAGAGAAATGAAAGAAGTAACCTAGATTCTTATATACGTCTTATTTATCGTGATAAAAGAGATGCAGGCATAAAGAGTCTCTAACGCATTATTAGGGACAAATCAATAATTCTAAGGTTAAAAAAACGATCTAAAAGGAAGAGTGACGACCTAAAAGAAAGA</canonical_amplicon>
		<polymorphic_amplicon>ATTAAATAGCTGCGATAACAGAAGAAGAACAGTTTTCTGGAAAATGAGAGAAAATTGGTGAAAGATACGTACTTATTAGAAGAGAAATGAAAGAAGTAACCTAGATTCTTATATACGTCTTATTTATCGTGATAAAAGAGAYGCAGGCATAAAGAGTCTCTAACGCATTATTAGGGACAAATCAATAATTCTAAGGTTAAAAAAACGATCTAAAAGGAAGAGTGACGACCTAAAAGAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8149</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>108217</contig_pos>
        <strand>+</strand>
        <context>CATTTAGCTC[A/T]TTTTTTTCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACGACTGCAAGAAATGGTAAGAATCCCCAGTTATCCGACCATTTAGCTC</left_flank>
        <right_flank>TTTTTTTCAGAATCCCCAACTTCTGAATCCGAGCCATCAGAATCCACAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCACAAACAACAGCATTTCCAACTTCTGAAGGGAACGGTAAAATTATTCACTGGCAAATGATGTAATTTTTTCTAGATCCTCCAACTACAGTGACTGTTTCCGAGTCCTCCAAAACGACGTCTGTGAGAAATGGTAACATTTTGAAGCGTTCGTCTTATATGAAAAAAAGTAATTCACATTTCAGATCAACCAACTTCCATGACGTCATCTGAACTGTCCTCTACGACTTCTGAACCTGCTGAAGCGTCTGTACAAACTACAACTCCTTCGATAGGAAACGGTAAGATTCAGGAACCATTAAACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGACTGCAAGAAATGGTAAGAATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAATCCGAGCCATCAGAATCCACAACAATCCAGACCATCATCTCCTCCACCCCTGTCTCCTGCTCCGATGCCCTGTGTTCTATTCAGAATATGCTCCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>TTCACAAACAACAGCATTTCCAACTTCTGAAGGGAACGGTAAAATTATTCACTGGCAAATGATGTAATTTTTTCTAGATCCTCCAACTACAGTGACTGTTTCCGAGTCCTCCAAAACGACGTCTGTGAGAAATGGTAACATTTTGAAGCGTTCGTCTTATATGAAAAAAAGTAATTCACATTTCAGATCAACCAACTTCCATGACGTCATCTGAACTGTCCTCTACGACTTCTGAACCTGCTGAAGCGTCTGTACAAACTACAACTCCTTCGATAGGAAACGGTAAGATTCAGGAACCATTAAACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGACTGCAAGAAATGGTAAGAATCCCCAGTTATCCGACCATTTAGCTCWTTTTTTTCAGAATCCCCAACTTCTGAATCCGAGCCATCAGAATCCACAACAATCCAGACCATCATCTCCTCCACCCCTGTCTCCTGCTCCGATGCCCTGTGTTCTATTCAGAATATGCTCCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCTGTAGCTCCTTTTTACAGA</pcr_primer_p1>
		<pcr_primer_p2>GGATTGTTGTGGATTCTGAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGACTGCAAGAAATGGTAAGAATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAATCCGAGCCATCAGAATCCACAACAATCC</canonical_amplicon>
		<polymorphic_amplicon>ACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGACTGCAAGAAATGGTAAGAATCCCCAGTTATCCGACCATTTAGCTCWTTTTTTTCAGAATCCCCAACTTCTGAATCCGAGCCATCAGAATCCACAACAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8150</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>108198</contig_pos>
        <strand>+</strand>
        <context>RAATCCCCAG[A/T]TATCCGACCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGAACCTACTTTAGGTCCAACGACTGCAAGAAATGGTAAGAATCCCCAG</left_flank>
        <right_flank>TATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAATCCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCTAAATCTCCCTCTGCTTCACAAACAACAGCATTTCCAACTTCTGAAGGGAACGGTAAAATTATTCACTGGCAAATGATGTAATTTTTTCTAGATCCTCCAACTACAGTGACTGTTTCCGAGTCCTCCAAAACGACGTCTGTGAGAAATGGTAACATTTTGAAGCGTTCGTCTTATATGAAAAAAAGTAATTCACATTTCAGATCAACCAACTTCCATGACGTCATCTGAACTGTCCTCTACGACTTCTGAACCTGCTGAAGCGTCTGTACAAACTACAACTCCTTCGATAGGAAACGGTAAGATTCAGGAACCATTAAACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGACTGCAAGAAATGGTAAGAATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAATCCGAGCCATCAGAATCCACAACAATCCAGACCATCATCTCCTCCACCCCTGTCTCCTGCTCCGATGCCCTGTGTTCTATTCAGAATATGCTCCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>CTTCTAAATCTCCCTCTGCTTCACAAACAACAGCATTTCCAACTTCTGAAGGGAACGGTAAAATTATTCACTGGCAAATGATGTAATTTTTTCTAGATCCTCCAACTACAGTGACTGTTTCCGAGTCCTCCAAAACGACGTCTGTGAGAAATGGTAACATTTTGAAGCGTTCGTCTTATATGAAAAAAAGTAATTCACATTTCAGATCAACCAACTTCCATGACGTCATCTGAACTGTCCTCTACGACTTCTGAACCTGCTGAAGCGTCTGTACAAACTACAACTCCTTCGATAGGAAACGGTAAGATTCAGGAACCATTAAACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGACTGCAAGAAATGGTAAGAATCCCCAGWTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAATCCGAGCCATCAGAATCCACAACAATCCAGACCATCATCTCCTCCACCCCTGTCTCCTGCTCCGATGCCCTGTGTTCTATTCAGAATATGCTCCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCTGTAGCTCCTTTTTACAGA</pcr_primer_p1>
		<pcr_primer_p2>GGATTGTTGTGGATTCTGAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGACTGCAAGAAATGGTAAGAATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAATCCGAGCCATCAGAATCCACAACAATCC</canonical_amplicon>
		<polymorphic_amplicon>ACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGACTGCAAGAAATGGTAAGAATCCCCAGWTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAATCCGAGCCATCAGAATCCACAACAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8151</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>108188</contig_pos>
        <strand>+</strand>
        <context>RAAAYGGTAA[A/G]AATCCCCAGW</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAACGTCCCCTGAACCTACTTTAGGTCCAACGACTGCAAGAAATGGTAA</left_flank>
        <right_flank>AATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGTGAGCTCTTCTAAATCTCCCTCTGCTTCACAAACAACAGCATTTCCAACTTCTGAAGGGAACGGTAAAATTATTCACTGGCAAATGATGTAATTTTTTCTAGATCCTCCAACTACAGTGACTGTTTCCGAGTCCTCCAAAACGACGTCTGTGAGAAATGGTAACATTTTGAAGCGTTCGTCTTATATGAAAAAAAGTAATTCACATTTCAGATCAACCAACTTCCATGACGTCATCTGAACTGTCCTCTACGACTTCTGAACCTGCTGAAGCGTCTGTACAAACTACAACTCCTTCGATAGGAAACGGTAAGATTCAGGAACCATTAAACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGACTGCAAGAAATGGTAAGAATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAATCCGAGCCATCAGAATCCACAACAATCCAGACCATCATCTCCTCCACCCCTGTCTCCTGCTCCGATGCCCTGTGTTCTATTCAGAATATGCTCCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>CCAGTGAGCTCTTCTAAATCTCCCTCTGCTTCACAAACAACAGCATTTCCAACTTCTGAAGGGAACGGTAAAATTATTCACTGGCAAATGATGTAATTTTTTCTAGATCCTCCAACTACAGTGACTGTTTCCGAGTCCTCCAAAACGACGTCTGTGAGAAATGGTAACATTTTGAAGCGTTCGTCTTATATGAAAAAAAGTAATTCACATTTCAGATCAACCAACTTCCATGACGTCATCTGAACTGTCCTCTACGACTTCTGAACCTGCTGAAGCGTCTGTACAAACTACAACTCCTTCGATAGGAAACGGTAAGATTCAGGAACCATTAAACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGACTGCAAGAAATGGTAARAATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAATCCGAGCCATCAGAATCCACAACAATCCAGACCATCATCTCCTCCACCCCTGTCTCCTGCTCCGATGCCCTGTGTTCTATTCAGAATATGCTCCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>431 183 133 83 39 38 33 30 15 15</canonical_bands>
                <polymorphic_bands>431 183 133 122 38 33 30 15 15</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>431 316 83 39 38 33 30 15 15</canonical_bands>
                <polymorphic_bands>431 316 122 38 33 30 15 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATTCAGGAACCATTAAACTCT</pcr_primer_p1>
		<pcr_primer_p2>ATTCAGAAGTTGGGGATTCT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AGATTCAGGAACCATTAAACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGACTGCAAGAAATGGTAAGAATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAAT</canonical_amplicon>
		<polymorphic_amplicon>AGATTCAGGAACCATTAAACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGACTGCAAGAAATGGTAARAATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8152</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>108182</contig_pos>
        <strand>+</strand>
        <context>CYGCAARAAA[C/T]GGTAARAATC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGACTGCAAGAAA</left_flank>
        <right_flank>GGTAAGAATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGAATCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAACTCCAGTGAGCTCTTCTAAATCTCCCTCTGCTTCACAAACAACAGCATTTCCAACTTCTGAAGGGAACGGTAAAATTATTCACTGGCAAATGATGTAATTTTTTCTAGATCCTCCAACTACAGTGACTGTTTCCGAGTCCTCCAAAACGACGTCTGTGAGAAATGGTAACATTTTGAAGCGTTCGTCTTATATGAAAAAAAGTAATTCACATTTCAGATCAACCAACTTCCATGACGTCATCTGAACTGTCCTCTACGACTTCTGAACCTGCTGAAGCGTCTGTACAAACTACAACTCCTTCGATAGGAAACGGTAAGATTCAGGAACCATTAAACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGACTGCAAGAAATGGTAAGAATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAATCCGAGCCATCAGAATCCACAACAATCCAGACCATCATCTCCTCCACCCCTGTCTCCTGCTCCGATGCCCTGTGTTCTATTCAGAATATGCTCCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>CCAACTCCAGTGAGCTCTTCTAAATCTCCCTCTGCTTCACAAACAACAGCATTTCCAACTTCTGAAGGGAACGGTAAAATTATTCACTGGCAAATGATGTAATTTTTTCTAGATCCTCCAACTACAGTGACTGTTTCCGAGTCCTCCAAAACGACGTCTGTGAGAAATGGTAACATTTTGAAGCGTTCGTCTTATATGAAAAAAAGTAATTCACATTTCAGATCAACCAACTTCCATGACGTCATCTGAACTGTCCTCTACGACTTCTGAACCTGCTGAAGCGTCTGTACAAACTACAACTCCTTCGATAGGAAACGGTAAGATTCAGGAACCATTAAACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGACTGCAAGAAAYGGTAAGAATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAATCCGAGCCATCAGAATCCACAACAATCCAGACCATCATCTCCTCCACCCCTGTCTCCTGCTCCGATGCCCTGTGTTCTATTCAGAATATGCTCCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATTCAGGAACCATTAAACTCT</pcr_primer_p1>
		<pcr_primer_p2>ATTCAGAAGTTGGGGATTCT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AGATTCAGGAACCATTAAACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGACTGCAAGAAATGGTAAGAATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAAT</canonical_amplicon>
		<polymorphic_amplicon>AGATTCAGGAACCATTAAACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGACTGCAAGAAAYGGTAAGAATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8153</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>108178</contig_pos>
        <strand>+</strand>
        <context>ACGACYGCAA[A/G]AAAYGGTAAR</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAGCTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGACTGCAA</left_flank>
        <right_flank>AAATGGTAAGAATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAACCAACTCCAGTGAGCTCTTCTAAATCTCCCTCTGCTTCACAAACAACAGCATTTCCAACTTCTGAAGGGAACGGTAAAATTATTCACTGGCAAATGATGTAATTTTTTCTAGATCCTCCAACTACAGTGACTGTTTCCGAGTCCTCCAAAACGACGTCTGTGAGAAATGGTAACATTTTGAAGCGTTCGTCTTATATGAAAAAAAGTAATTCACATTTCAGATCAACCAACTTCCATGACGTCATCTGAACTGTCCTCTACGACTTCTGAACCTGCTGAAGCGTCTGTACAAACTACAACTCCTTCGATAGGAAACGGTAAGATTCAGGAACCATTAAACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGACTGCAAGAAATGGTAAGAATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAATCCGAGCCATCAGAATCCACAACAATCCAGACCATCATCTCCTCCACCCCTGTCTCCTGCTCCGATGCCCTGTGTTCTATTCAGAATATGCTCCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>CCAACCAACTCCAGTGAGCTCTTCTAAATCTCCCTCTGCTTCACAAACAACAGCATTTCCAACTTCTGAAGGGAACGGTAAAATTATTCACTGGCAAATGATGTAATTTTTTCTAGATCCTCCAACTACAGTGACTGTTTCCGAGTCCTCCAAAACGACGTCTGTGAGAAATGGTAACATTTTGAAGCGTTCGTCTTATATGAAAAAAAGTAATTCACATTTCAGATCAACCAACTTCCATGACGTCATCTGAACTGTCCTCTACGACTTCTGAACCTGCTGAAGCGTCTGTACAAACTACAACTCCTTCGATAGGAAACGGTAAGATTCAGGAACCATTAAACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGACTGCAARAAATGGTAAGAATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAATCCGAGCCATCAGAATCCACAACAATCCAGACCATCATCTCCTCCACCCCTGTCTCCTGCTCCGATGCCCTGTGTTCTATTCAGAATATGCTCCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATTCAGGAACCATTAAACTCT</pcr_primer_p1>
		<pcr_primer_p2>ATTCAGAAGTTGGGGATTCT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AGATTCAGGAACCATTAAACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGACTGCAAGAAATGGTAAGAATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAAT</canonical_amplicon>
		<polymorphic_amplicon>AGATTCAGGAACCATTAAACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGACTGCAARAAATGGTAAGAATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8154</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>108173</contig_pos>
        <strand>+</strand>
        <context>GTCCAACGAC[C/T]GCAARAAAYG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGAC</left_flank>
        <right_flank>GCAAGAAATGGTAAGAATCCCCAGTTATCCGACCATTTAGCTCATTTTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGACCAACCAACTCCAGTGAGCTCTTCTAAATCTCCCTCTGCTTCACAAACAACAGCATTTCCAACTTCTGAAGGGAACGGTAAAATTATTCACTGGCAAATGATGTAATTTTTTCTAGATCCTCCAACTACAGTGACTGTTTCCGAGTCCTCCAAAACGACGTCTGTGAGAAATGGTAACATTTTGAAGCGTTCGTCTTATATGAAAAAAAGTAATTCACATTTCAGATCAACCAACTTCCATGACGTCATCTGAACTGTCCTCTACGACTTCTGAACCTGCTGAAGCGTCTGTACAAACTACAACTCCTTCGATAGGAAACGGTAAGATTCAGGAACCATTAAACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGACTGCAAGAAATGGTAAGAATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAATCCGAGCCATCAGAATCCACAACAATCCAGACCATCATCTCCTCCACCCCTGTCTCCTGCTCCGATGCCCTGTGTTCTATTCAGAATATGCTCCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>CCAGACCAACCAACTCCAGTGAGCTCTTCTAAATCTCCCTCTGCTTCACAAACAACAGCATTTCCAACTTCTGAAGGGAACGGTAAAATTATTCACTGGCAAATGATGTAATTTTTTCTAGATCCTCCAACTACAGTGACTGTTTCCGAGTCCTCCAAAACGACGTCTGTGAGAAATGGTAACATTTTGAAGCGTTCGTCTTATATGAAAAAAAGTAATTCACATTTCAGATCAACCAACTTCCATGACGTCATCTGAACTGTCCTCTACGACTTCTGAACCTGCTGAAGCGTCTGTACAAACTACAACTCCTTCGATAGGAAACGGTAAGATTCAGGAACCATTAAACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGACYGCAAGAAATGGTAAGAATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAATCCGAGCCATCAGAATCCACAACAATCCAGACCATCATCTCCTCCACCCCTGTCTCCTGCTCCGATGCCCTGTGTTCTATTCAGAATATGCTCCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATTCAGGAACCATTAAACTCT</pcr_primer_p1>
		<pcr_primer_p2>ATTCAGAAGTTGGGGATTCT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AGATTCAGGAACCATTAAACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGACTGCAAGAAATGGTAAGAATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAAT</canonical_amplicon>
		<polymorphic_amplicon>AGATTCAGGAACCATTAAACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGACYGCAAGAAATGGTAAGAATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8155</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>108161</contig_pos>
        <strand>+</strand>
        <context>AACCTACTTY[A/T]GGTCCAACGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTT</left_flank>
        <right_flank>GGTCCAACGACTGCAAGAAATGGTAAGAATCCCCAGTTATCCGACCATTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATCGAAATTTCCAGACCAACCAACTCCAGTGAGCTCTTCTAAATCTCCCTCTGCTTCACAAACAACAGCATTTCCAACTTCTGAAGGGAACGGTAAAATTATTCACTGGCAAATGATGTAATTTTTTCTAGATCCTCCAACTACAGTGACTGTTTCCGAGTCCTCCAAAACGACGTCTGTGAGAAATGGTAACATTTTGAAGCGTTCGTCTTATATGAAAAAAAGTAATTCACATTTCAGATCAACCAACTTCCATGACGTCATCTGAACTGTCCTCTACGACTTCTGAACCTGCTGAAGCGTCTGTACAAACTACAACTCCTTCGATAGGAAACGGTAAGATTCAGGAACCATTAAACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGACTGCAAGAAATGGTAAGAATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAATCCGAGCCATCAGAATCCACAACAATCCAGACCATCATCTCCTCCACCCCTGTCTCCTGCTCCGATGCCCTGTGTTCTATTCAGAATATGCTCCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>GAATCGAAATTTCCAGACCAACCAACTCCAGTGAGCTCTTCTAAATCTCCCTCTGCTTCACAAACAACAGCATTTCCAACTTCTGAAGGGAACGGTAAAATTATTCACTGGCAAATGATGTAATTTTTTCTAGATCCTCCAACTACAGTGACTGTTTCCGAGTCCTCCAAAACGACGTCTGTGAGAAATGGTAACATTTTGAAGCGTTCGTCTTATATGAAAAAAAGTAATTCACATTTCAGATCAACCAACTTCCATGACGTCATCTGAACTGTCCTCTACGACTTCTGAACCTGCTGAAGCGTCTGTACAAACTACAACTCCTTCGATAGGAAACGGTAAGATTCAGGAACCATTAAACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTWGGTCCAACGACTGCAAGAAATGGTAAGAATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAATCCGAGCCATCAGAATCCACAACAATCCAGACCATCATCTCCTCCACCCCTGTCTCCTGCTCCGATGCCCTGTGTTCTATTCAGAATATGCTCCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCTNNNNNAGG</site>
                <isoschizomers>
                    <enzyme>BstENI</enzyme>
                    <enzyme>EcoNI</enzyme>
                    <enzyme>XagI</enzyme>
                </isoschizomers>
                <canonical_bands>504 327 169</canonical_bands>
                <polymorphic_bands>673 327</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATTCAGGAACCATTAAACTCT</pcr_primer_p1>
		<pcr_primer_p2>ATTCAGAAGTTGGGGATTCT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AGATTCAGGAACCATTAAACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGACTGCAAGAAATGGTAAGAATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAAT</canonical_amplicon>
		<polymorphic_amplicon>AGATTCAGGAACCATTAAACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTWGGTCCAACGACTGCAAGAAATGGTAAGAATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8156</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>108160</contig_pos>
        <strand>+</strand>
        <context>GAACCTACTT[C/T]WGGTCCAACG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTT</left_flank>
        <right_flank>AGGTCCAACGACTGCAAGAAATGGTAAGAATCCCCAGTTATCCGACCATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATCGAAATTTCCAGACCAACCAACTCCAGTGAGCTCTTCTAAATCTCCCTCTGCTTCACAAACAACAGCATTTCCAACTTCTGAAGGGAACGGTAAAATTATTCACTGGCAAATGATGTAATTTTTTCTAGATCCTCCAACTACAGTGACTGTTTCCGAGTCCTCCAAAACGACGTCTGTGAGAAATGGTAACATTTTGAAGCGTTCGTCTTATATGAAAAAAAGTAATTCACATTTCAGATCAACCAACTTCCATGACGTCATCTGAACTGTCCTCTACGACTTCTGAACCTGCTGAAGCGTCTGTACAAACTACAACTCCTTCGATAGGAAACGGTAAGATTCAGGAACCATTAAACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGACTGCAAGAAATGGTAAGAATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAATCCGAGCCATCAGAATCCACAACAATCCAGACCATCATCTCCTCCACCCCTGTCTCCTGCTCCGATGCCCTGTGTTCTATTCAGAATATGCTCCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>AGAATCGAAATTTCCAGACCAACCAACTCCAGTGAGCTCTTCTAAATCTCCCTCTGCTTCACAAACAACAGCATTTCCAACTTCTGAAGGGAACGGTAAAATTATTCACTGGCAAATGATGTAATTTTTTCTAGATCCTCCAACTACAGTGACTGTTTCCGAGTCCTCCAAAACGACGTCTGTGAGAAATGGTAACATTTTGAAGCGTTCGTCTTATATGAAAAAAAGTAATTCACATTTCAGATCAACCAACTTCCATGACGTCATCTGAACTGTCCTCTACGACTTCTGAACCTGCTGAAGCGTCTGTACAAACTACAACTCCTTCGATAGGAAACGGTAAGATTCAGGAACCATTAAACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTYAGGTCCAACGACTGCAAGAAATGGTAAGAATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAATCCGAGCCATCAGAATCCACAACAATCCAGACCATCATCTCCTCCACCCCTGTCTCCTGCTCCGATGCCCTGTGTTCTATTCAGAATATGCTCCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATTCAGGAACCATTAAACTCT</pcr_primer_p1>
		<pcr_primer_p2>ATTCAGAAGTTGGGGATTCT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AGATTCAGGAACCATTAAACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGACTGCAAGAAATGGTAAGAATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAAT</canonical_amplicon>
		<polymorphic_amplicon>AGATTCAGGAACCATTAAACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTYAGGTCCAACGACTGCAAGAAATGGTAAGAATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8157</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>107908</contig_pos>
        <strand>+</strand>
        <context>TTTCAGATCA[A/T]CCAACTTCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTGAAGCGTTCGTCTTATATGAAAAAAAGTAATTCACATTTCAGATCA</left_flank>
        <right_flank>CCAACTTCCATGACGTCATCTGAACTGTCCTCTACGACTTCTGAACCTGC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGCGTTTTAAGAACTCTTACATTTATCAGAAAAGTCCGTTGATAAAAATAAGGGTCCTGTGGCTCTCAAAGGGGTTAAAAATGTTCTTTAGTCTGAAGAATAGTTCATTGGGAAATACTAAGGTTAATTTCGAACTTCACAGGACCTCTTTCTTGTTAACAAACTATTTTGTAACTCAAAGAACCTTTATTTCAGCTACAAGGACCTTAAAAAGAGTGACAAACCTTTTTAAGACCGTTTTTTCGAAGCAGAATCGAAATTTCCAGACCAACCAACTCCAGTGAGCTCTTCTAAATCTCCCTCTGCTTCACAAACAACAGCATTTCCAACTTCTGAAGGGAACGGTAAAATTATTCACTGGCAAATGATGTAATTTTTTCTAGATCCTCCAACTACAGTGACTGTTTCCGAGTCCTCCAAAACGACGTCTGTGAGAAATGGTAACATTTTGAAGCGTTCGTCTTATATGAAAAAAAGTAATTCACATTTCAGATCAACCAACTTCCATGACGTCATCTGAACTGTCCTCTACGACTTCTGAACCTGCTGAAGCGTCTGTACAAACTACAACTCCTTCGATAGGAAACGGTAAGATTCAGGAACCATTAAACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGACTGCAAGAAATGGTAAGAATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAATCCGAGCCATCAGAATCCACAACAATCCAGACCATCATCTCCTCCACCCCTGTCTCCTGCTCCGATGCCCTGTGTTCTATTCAGAATATGCTCCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>TTTTGCGTTTTAAGAACTCTTACATTTATCAGAAAAGTCCGTTGATAAAAATAAGGGTCCTGTGGCTCTCAAAGGGGTTAAAAATGTTCTTTAGTCTGAAGAATAGTTCATTGGGAAATACTAAGGTTAATTTCGAACTTCACAGGACCTCTTTCTTGTTAACAAACTATTTTGTAACTCAAAGAACCTTTATTTCAGCTACAAGGACCTTAAAAAGAGTGACAAACCTTTTTAAGACCGTTTTTTCGAAGCAGAATCGAAATTTCCAGACCAACCAACTCCAGTGAGCTCTTCTAAATCTCCCTCTGCTTCACAAACAACAGCATTTCCAACTTCTGAAGGGAACGGTAAAATTATTCACTGGCAAATGATGTAATTTTTTCTAGATCCTCCAACTACAGTGACTGTTTCCGAGTCCTCCAAAACGACGTCTGTGAGAAATGGTAACATTTTGAAGCGTTCGTCTTATATGAAAAAAAGTAATTCACATTTCAGATCAWCCAACTTCCATGACGTCATCTGAACTGTCCTCTACGACTTCTGAACCTGCTGAAGCGTCTGTACAAACTACAACTCCTTCGATAGGAAACGGTAAGATTCAGGAACCATTAAACTCTGTAGCTCCTTTTTACAGAATCTTCAGCTTCCACAGCTCCATCTTCTTCAGAATCCTCAACTCTTGAATATCAGCCTACAGAATCCACTACTCTCCAAGAAAATGAGCTAACCTCAACGTCCCCTGAACCTACTTTAGGTCCAACGACTGCAAGAAATGGTAAGAATCCCCAGTTATCCGACCATTTAGCTCATTTTTTTCAGAATCCCCAACTTCTGAATCCGAGCCATCAGAATCCACAACAATCCAGACCATCATCTCCTCCACCCCTGTCTCCTGCTCCGATGCCCTGTGTTCTATTCAGAATATGCTCCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTAGATCCTCCAACTACA</pcr_primer_p1>
		<pcr_primer_p2>AAGGAGCTACAGAGTTTAATGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTAGATCCTCCAACTACAGTGACTGTTTCCGAGTCCTCCAAAACGACGTCTGTGAGAAATGGTAACATTTTGAAGCGTTCGTCTTATATGAAAAAAAGTAATTCACATTTCAGATCAACCAACTTCCATGACGTCATCTGAACTGTCCTCTACGACTTCTGAACCTGCTGAAGCGTCTGTACAAACTACAACTCCTTCGATAGGAAACGGTAAGATTCAGGAACCATTAAACTCTGTAGCTCCTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTAGATCCTCCAACTACAGTGACTGTTTCCGAGTCCTCCAAAACGACGTCTGTGAGAAATGGTAACATTTTGAAGCGTTCGTCTTATATGAAAAAAAGTAATTCACATTTCAGATCAWCCAACTTCCATGACGTCATCTGAACTGTCCTCTACGACTTCTGAACCTGCTGAAGCGTCTGTACAAACTACAACTCCTTCGATAGGAAACGGTAAGATTCAGGAACCATTAAACTCTGTAGCTCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8158</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>128563</contig_pos>
        <strand>+</strand>
        <context>ATTTTAAAAA[C/T]TACTTAAAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCGACAAACTGAAATGGATTTTATGAAAATCGGCAAGTGATTTTAAAAA</left_flank>
        <right_flank>TACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTATTTTCATCCATTCATCTAAAATGGATATTGAAAAAAAATTTGCAAGTATTAGAAAAATACATAAACATTAAGTTCTTAAACGGACCAAAAACGGACTAAAAACAGATCGAAAACAAACGAAAAATTAGCAAAAAATGGTCCGGTCCATTTTTTGGTCCGTTTTTGGATCATTTTTGATGCGCTTTCGGCCCGTTTTTGACCTGTATTACTTCTATTTTTATCAATTCACAGATTTTCAAATCAAGTAGTTTTTAACTGCTTATTAACTTTTATAACATCATTCCAGTTTGCCGAAACATTAGAGAAAACTGCAAGTATGAATTTAACATATATTATAGAGCAATTTGTACCTATTTTTGCTGTTTCATGAGCTGATTTTTGATTTCTGTACCAAACAAAAATTTTTTATCAGTAGAATATTTTCAATTCATACTTGCGAACTTCGACAAACTGAAATGGATTTTATGAAAATCGGCAAGTGATTTTAAAAACTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTCCCAGATGTAGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTAGTACGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACCATGAACCACTTTAGACGTCCGCATGATTGGTTTTGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAAGTTCCTACATAGACCGGAGATAGTGGAGACGCAGACGGAACA</canonical>
            <polymorphic>ATTTTTTATTTTCATCCATTCATCTAAAATGGATATTGAAAAAAAATTTGCAAGTATTAGAAAAATACATAAACATTAAGTTCTTAAACGGACCAAAAACGGACTAAAAACAGATCGAAAACAAACGAAAAATTAGCAAAAAATGGTCCGGTCCATTTTTTGGTCCGTTTTTGGATCATTTTTGATGCGCTTTCGGCCCGTTTTTGACCTGTATTACTTCTATTTTTATCAATTCACAGATTTTCAAATCAAGTAGTTTTTAACTGCTTATTAACTTTTATAACATCATTCCAGTTTGCCGAAACATTAGAGAAAACTGCAAGTATGAATTTAACATATATTATAGAGCAATTTGTACCTATTTTTGCTGTTTCATGAGCTGATTTTTGATTTCTGTACCAAACAAAAATTTTTTATCAGTAGAATATTTTCAATTCATACTTGCGAACTTCGACAAACTGAAATGGATTTTATGAAAATCGGCAAGTGATTTTAAAAAYTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTCCCAGATGTAGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTAGTACGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACCATGAACCACTTTAGACGTCCGCATGATTGGTTTTGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAAGTTCCTACATAGACCGGAGATAGTGGAGACGCAGACGGAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTTCGACAAACTGAAATG</pcr_primer_p1>
		<pcr_primer_p2>AACACCAGTTGTTTCAATAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>GAACTTCGACAAACTGAAATGGATTTTATGAAAATCGGCAAGTGATTTTAAAAACTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTT</canonical_amplicon>
		<polymorphic_amplicon>GAACTTCGACAAACTGAAATGGATTTTATGAAAATCGGCAAGTGATTTTAAAAAYTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8159</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>128616</contig_pos>
        <strand>+</strand>
        <context>CAAAAACAGA[C/G]CAAGATCGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGA</left_flank>
        <right_flank>CAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATTAGAAAAATACATAAACATTAAGTTCTTAAACGGACCAAAAACGGACTAAAAACAGATCGAAAACAAACGAAAAATTAGCAAAAAATGGTCCGGTCCATTTTTTGGTCCGTTTTTGGATCATTTTTGATGCGCTTTCGGCCCGTTTTTGACCTGTATTACTTCTATTTTTATCAATTCACAGATTTTCAAATCAAGTAGTTTTTAACTGCTTATTAACTTTTATAACATCATTCCAGTTTGCCGAAACATTAGAGAAAACTGCAAGTATGAATTTAACATATATTATAGAGCAATTTGTACCTATTTTTGCTGTTTCATGAGCTGATTTTTGATTTCTGTACCAAACAAAAATTTTTTATCAGTAGAATATTTTCAATTCATACTTGCGAACTTCGACAAACTGAAATGGATTTTATGAAAATCGGCAAGTGATTTTAAAAACTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTCCCAGATGTAGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTAGTACGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACCATGAACCACTTTAGACGTCCGCATGATTGGTTTTGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAAGTTCCTACATAGACCGGAGATAGTGGAGACGCAGACGGAACACAATGAAAAAACAGACAAGTAGATCGTTTTTATACACACACCGAAAGTGAAGG</canonical>
            <polymorphic>GTATTAGAAAAATACATAAACATTAAGTTCTTAAACGGACCAAAAACGGACTAAAAACAGATCGAAAACAAACGAAAAATTAGCAAAAAATGGTCCGGTCCATTTTTTGGTCCGTTTTTGGATCATTTTTGATGCGCTTTCGGCCCGTTTTTGACCTGTATTACTTCTATTTTTATCAATTCACAGATTTTCAAATCAAGTAGTTTTTAACTGCTTATTAACTTTTATAACATCATTCCAGTTTGCCGAAACATTAGAGAAAACTGCAAGTATGAATTTAACATATATTATAGAGCAATTTGTACCTATTTTTGCTGTTTCATGAGCTGATTTTTGATTTCTGTACCAAACAAAAATTTTTTATCAGTAGAATATTTTCAATTCATACTTGCGAACTTCGACAAACTGAAATGGATTTTATGAAAATCGGCAAGTGATTTTAAAAACTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGASCAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTCCCAGATGTAGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTAGTACGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACCATGAACCACTTTAGACGTCCGCATGATTGGTTTTGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAAGTTCCTACATAGACCGGAGATAGTGGAGACGCAGACGGAACACAATGAAAAAACAGACAAGTAGATCGTTTTTATACACACACCGAAAGTGAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAACTGAAATGGATTTTATGA</pcr_primer_p1>
		<pcr_primer_p2>AACACCAGTTGTTTCAATAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAAACTGAAATGGATTTTATGAAAATCGGCAAGTGATTTTAAAAACTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTT</canonical_amplicon>
		<polymorphic_amplicon>ACAAACTGAAATGGATTTTATGAAAATCGGCAAGTGATTTTAAAAACTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGASCAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8160</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>128646</contig_pos>
        <strand>+</strand>
        <context>AACAAAAAAT[A/G]AGCCTAAGCC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAAT</left_flank>
        <right_flank>AGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGGAGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAACGGACCAAAAACGGACTAAAAACAGATCGAAAACAAACGAAAAATTAGCAAAAAATGGTCCGGTCCATTTTTTGGTCCGTTTTTGGATCATTTTTGATGCGCTTTCGGCCCGTTTTTGACCTGTATTACTTCTATTTTTATCAATTCACAGATTTTCAAATCAAGTAGTTTTTAACTGCTTATTAACTTTTATAACATCATTCCAGTTTGCCGAAACATTAGAGAAAACTGCAAGTATGAATTTAACATATATTATAGAGCAATTTGTACCTATTTTTGCTGTTTCATGAGCTGATTTTTGATTTCTGTACCAAACAAAAATTTTTTATCAGTAGAATATTTTCAATTCATACTTGCGAACTTCGACAAACTGAAATGGATTTTATGAAAATCGGCAAGTGATTTTAAAAACTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTCCCAGATGTAGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTAGTACGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACCATGAACCACTTTAGACGTCCGCATGATTGGTTTTGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAAGTTCCTACATAGACCGGAGATAGTGGAGACGCAGACGGAACACAATGAAAAAACAGACAAGTAGATCGTTTTTATACACACACCGAAAGTGAAGGAGGAAAACTAAAGGTTGACTATAGTCACGT</canonical>
            <polymorphic>TTAAACGGACCAAAAACGGACTAAAAACAGATCGAAAACAAACGAAAAATTAGCAAAAAATGGTCCGGTCCATTTTTTGGTCCGTTTTTGGATCATTTTTGATGCGCTTTCGGCCCGTTTTTGACCTGTATTACTTCTATTTTTATCAATTCACAGATTTTCAAATCAAGTAGTTTTTAACTGCTTATTAACTTTTATAACATCATTCCAGTTTGCCGAAACATTAGAGAAAACTGCAAGTATGAATTTAACATATATTATAGAGCAATTTGTACCTATTTTTGCTGTTTCATGAGCTGATTTTTGATTTCTGTACCAAACAAAAATTTTTTATCAGTAGAATATTTTCAATTCATACTTGCGAACTTCGACAAACTGAAATGGATTTTATGAAAATCGGCAAGTGATTTTAAAAACTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAATRAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTCCCAGATGTAGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTAGTACGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACCATGAACCACTTTAGACGTCCGCATGATTGGTTTTGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAAGTTCCTACATAGACCGGAGATAGTGGAGACGCAGACGGAACACAATGAAAAAACAGACAAGTAGATCGTTTTTATACACACACCGAAAGTGAAGGAGGAAAACTAAAGGTTGACTATAGTCACGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAACTGAAATGGATTTTATGA</pcr_primer_p1>
		<pcr_primer_p2>AACACCAGTTGTTTCAATAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAAACTGAAATGGATTTTATGAAAATCGGCAAGTGATTTTAAAAACTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTT</canonical_amplicon>
		<polymorphic_amplicon>ACAAACTGAAATGGATTTTATGAAAATCGGCAAGTGATTTTAAAAACTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAATRAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8161</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>128693</contig_pos>
        <strand></strand>
        <context>AAAAATTTCG[G/T]AGTTTTTCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATGAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCG</left_flank>
        <right_flank>AGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTAGCAAAAAATGGTCCGGTCCATTTTTTGGTCCGTTTTTGGATCATTTTTGATGCGCTTTCGGCCCGTTTTTGACCTGTATTACTTCTATTTTTATCAATTCACAGATTTTCAAATCAAGTAGTTTTTAACTGCTTATTAACTTTTATAACATCATTCCAGTTTGCCGAAACATTAGAGAAAACTGCAAGTATGAATTTAACATATATTATAGAGCAATTTGTACCTATTTTTGCTGTTTCATGAGCTGATTTTTGATTTCTGTACCAAACAAAAATTTTTTATCAGTAGAATATTTTCAATTCATACTTGCGAACTTCGACAAACTGAAATGGATTTTATGAAAATCGGCAAGTGATTTTAAAAACTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTCCCAGATGTAGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTAGTACGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACCATGAACCACTTTAGACGTCCGCATGATTGGTTTTGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAAGTTCCTACATAGACCGGAGATAGTGGAGACGCAGACGGAACACAATGAAAAAACAGACAAGTAGATCGTTTTTATACACACACCGAAAGTGAAGGAGGAAAACTAAAGGTTGACTATAGTCACGTAGGTCAGCTATAGACGACCTTCTGGGAAGAAAAAAACAAAAGTGGAA</canonical>
            <polymorphic>AATTAGCAAAAAATGGTCCGGTCCATTTTTTGGTCCGTTTTTGGATCATTTTTGATGCGCTTTCGGCCCGTTTTTGACCTGTATTACTTCTATTTTTATCAATTCACAGATTTTCAAATCAAGTAGTTTTTAACTGCTTATTAACTTTTATAACATCATTCCAGTTTGCCGAAACATTAGAGAAAACTGCAAGTATGAATTTAACATATATTATAGAGCAATTTGTACCTATTTTTGCTGTTTCATGAGCTGATTTTTGATTTCTGTACCAAACAAAAATTTTTTATCAGTAGAATATTTTCAATTCATACTTGCGAACTTCGACAAACTGAAATGGATTTTATGAAAATCGGCAAGTGATTTTAAAAACTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGKAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTCCCAGATGTAGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTAGTACGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACCATGAACCACTTTAGACGTCCGCATGATTGGTTTTGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAAGTTCCTACATAGACCGGAGATAGTGGAGACGCAGACGGAACACAATGAAAAAACAGACAAGTAGATCGTTTTTATACACACACCGAAAGTGAAGGAGGAAAACTAAAGGTTGACTATAGTCACGTAGGTCAGCTATAGACGACCTTCTGGGAAGAAAAAAACAAAAGTGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>501 431 68</canonical_bands>
                <polymorphic_bands>569 431</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAACTGAAATGGATTTTATGA</pcr_primer_p1>
		<pcr_primer_p2>AACACCAGTTGTTTCAATAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAAACTGAAATGGATTTTATGAAAATCGGCAAGTGATTTTAAAAACTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTT</canonical_amplicon>
		<polymorphic_amplicon>ACAAACTGAAATGGATTTTATGAAAATCGGCAAGTGATTTTAAAAACTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGKAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8162</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>128793</contig_pos>
        <strand>+</strand>
        <context>TATACTTTTT[C/T]CCAGATGTWG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTT</left_flank>
        <right_flank>CCAGATGTAGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCACAGATTTTCAAATCAAGTAGTTTTTAACTGCTTATTAACTTTTATAACATCATTCCAGTTTGCCGAAACATTAGAGAAAACTGCAAGTATGAATTTAACATATATTATAGAGCAATTTGTACCTATTTTTGCTGTTTCATGAGCTGATTTTTGATTTCTGTACCAAACAAAAATTTTTTATCAGTAGAATATTTTCAATTCATACTTGCGAACTTCGACAAACTGAAATGGATTTTATGAAAATCGGCAAGTGATTTTAAAAACTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTCCCAGATGTAGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTAGTACGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACCATGAACCACTTTAGACGTCCGCATGATTGGTTTTGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAAGTTCCTACATAGACCGGAGATAGTGGAGACGCAGACGGAACACAATGAAAAAACAGACAAGTAGATCGTTTTTATACACACACCGAAAGTGAAGGAGGAAAACTAAAGGTTGACTATAGTCACGTAGGTCAGCTATAGACGACCTTCTGGGAAGAAAAAAACAAAAGTGGAAAAGATCAAATTTTATCGTTTTTGCAAGGAAAATGCACTAGAGATAATATTGGGTGTAGGACAACAATGAACAAGGAACAATACGTGAGTTTAGGAGAAAA</canonical>
            <polymorphic>AATTCACAGATTTTCAAATCAAGTAGTTTTTAACTGCTTATTAACTTTTATAACATCATTCCAGTTTGCCGAAACATTAGAGAAAACTGCAAGTATGAATTTAACATATATTATAGAGCAATTTGTACCTATTTTTGCTGTTTCATGAGCTGATTTTTGATTTCTGTACCAAACAAAAATTTTTTATCAGTAGAATATTTTCAATTCATACTTGCGAACTTCGACAAACTGAAATGGATTTTATGAAAATCGGCAAGTGATTTTAAAAACTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTYCCAGATGTAGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTAGTACGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACCATGAACCACTTTAGACGTCCGCATGATTGGTTTTGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAAGTTCCTACATAGACCGGAGATAGTGGAGACGCAGACGGAACACAATGAAAAAACAGACAAGTAGATCGTTTTTATACACACACCGAAAGTGAAGGAGGAAAACTAAAGGTTGACTATAGTCACGTAGGTCAGCTATAGACGACCTTCTGGGAAGAAAAAAACAAAAGTGGAAAAGATCAAATTTTATCGTTTTTGCAAGGAAAATGCACTAGAGATAATATTGGGTGTAGGACAACAATGAACAAGGAACAATACGTGAGTTTAGGAGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCAGTTTCAATGAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GGTGAGTTTTTCAATATTTTTATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTCCCAGATGTAGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTAGTACGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTYCCAGATGTAGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTAGTACGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8163</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>128802</contig_pos>
        <strand>+</strand>
        <context>TYCCAGATGT[A/T]GACCCTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTCCCAGATGT</left_flank>
        <right_flank>GACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTCAAATCAAGTAGTTTTTAACTGCTTATTAACTTTTATAACATCATTCCAGTTTGCCGAAACATTAGAGAAAACTGCAAGTATGAATTTAACATATATTATAGAGCAATTTGTACCTATTTTTGCTGTTTCATGAGCTGATTTTTGATTTCTGTACCAAACAAAAATTTTTTATCAGTAGAATATTTTCAATTCATACTTGCGAACTTCGACAAACTGAAATGGATTTTATGAAAATCGGCAAGTGATTTTAAAAACTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTCCCAGATGTAGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTAGTACGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACCATGAACCACTTTAGACGTCCGCATGATTGGTTTTGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAAGTTCCTACATAGACCGGAGATAGTGGAGACGCAGACGGAACACAATGAAAAAACAGACAAGTAGATCGTTTTTATACACACACCGAAAGTGAAGGAGGAAAACTAAAGGTTGACTATAGTCACGTAGGTCAGCTATAGACGACCTTCTGGGAAGAAAAAAACAAAAGTGGAAAAGATCAAATTTTATCGTTTTTGCAAGGAAAATGCACTAGAGATAATATTGGGTGTAGGACAACAATGAACAAGGAACAATACGTGAGTTTAGGAGAAAATTCTGTGAG</canonical>
            <polymorphic>ATTTTCAAATCAAGTAGTTTTTAACTGCTTATTAACTTTTATAACATCATTCCAGTTTGCCGAAACATTAGAGAAAACTGCAAGTATGAATTTAACATATATTATAGAGCAATTTGTACCTATTTTTGCTGTTTCATGAGCTGATTTTTGATTTCTGTACCAAACAAAAATTTTTTATCAGTAGAATATTTTCAATTCATACTTGCGAACTTCGACAAACTGAAATGGATTTTATGAAAATCGGCAAGTGATTTTAAAAACTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTCCCAGATGTWGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTAGTACGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACCATGAACCACTTTAGACGTCCGCATGATTGGTTTTGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAAGTTCCTACATAGACCGGAGATAGTGGAGACGCAGACGGAACACAATGAAAAAACAGACAAGTAGATCGTTTTTATACACACACCGAAAGTGAAGGAGGAAAACTAAAGGTTGACTATAGTCACGTAGGTCAGCTATAGACGACCTTCTGGGAAGAAAAAAACAAAAGTGGAAAAGATCAAATTTTATCGTTTTTGCAAGGAAAATGCACTAGAGATAATATTGGGTGTAGGACAACAATGAACAAGGAACAATACGTGAGTTTAGGAGAAAATTCTGTGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCAGTTTCAATGAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GGTGAGTTTTTCAATATTTTTATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTCCCAGATGTAGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTAGTACGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTCCCAGATGTWGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTAGTACGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8164</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>128878</contig_pos>
        <strand>+</strand>
        <context>GGTCAGTTTT[A/G]GTMCGTTTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTT</left_flank>
        <right_flank>GTACGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGCAAGTATGAATTTAACATATATTATAGAGCAATTTGTACCTATTTTTGCTGTTTCATGAGCTGATTTTTGATTTCTGTACCAAACAAAAATTTTTTATCAGTAGAATATTTTCAATTCATACTTGCGAACTTCGACAAACTGAAATGGATTTTATGAAAATCGGCAAGTGATTTTAAAAACTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTCCCAGATGTAGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTAGTACGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACCATGAACCACTTTAGACGTCCGCATGATTGGTTTTGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAAGTTCCTACATAGACCGGAGATAGTGGAGACGCAGACGGAACACAATGAAAAAACAGACAAGTAGATCGTTTTTATACACACACCGAAAGTGAAGGAGGAAAACTAAAGGTTGACTATAGTCACGTAGGTCAGCTATAGACGACCTTCTGGGAAGAAAAAAACAAAAGTGGAAAAGATCAAATTTTATCGTTTTTGCAAGGAAAATGCACTAGAGATAATATTGGGTGTAGGACAACAATGAACAAGGAACAATACGTGAGTTTAGGAGAAAATTCTGTGAGCTCGACTGACTACGACAAAGGTCAATGAAGTACATCGTGAAACAGAGAGAAATAGTCTAGATCATACAGTCTGAAA</canonical>
            <polymorphic>ACTGCAAGTATGAATTTAACATATATTATAGAGCAATTTGTACCTATTTTTGCTGTTTCATGAGCTGATTTTTGATTTCTGTACCAAACAAAAATTTTTTATCAGTAGAATATTTTCAATTCATACTTGCGAACTTCGACAAACTGAAATGGATTTTATGAAAATCGGCAAGTGATTTTAAAAACTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTCCCAGATGTAGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTRGTACGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACCATGAACCACTTTAGACGTCCGCATGATTGGTTTTGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAAGTTCCTACATAGACCGGAGATAGTGGAGACGCAGACGGAACACAATGAAAAAACAGACAAGTAGATCGTTTTTATACACACACCGAAAGTGAAGGAGGAAAACTAAAGGTTGACTATAGTCACGTAGGTCAGCTATAGACGACCTTCTGGGAAGAAAAAAACAAAAGTGGAAAAGATCAAATTTTATCGTTTTTGCAAGGAAAATGCACTAGAGATAATATTGGGTGTAGGACAACAATGAACAAGGAACAATACGTGAGTTTAGGAGAAAATTCTGTGAGCTCGACTGACTACGACAAAGGTCAATGAAGTACATCGTGAAACAGAGAGAAATAGTCTAGATCATACAGTCTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCAGTTTCAATGAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GGTGAGTTTTTCAATATTTTTATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTCCCAGATGTAGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTAGTACGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTCCCAGATGTAGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTRGTACGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8165</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>128881</contig_pos>
        <strand>+</strand>
        <context>CAGTTTTRGT[A/C]CGTTTTAGGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTAGT</left_flank>
        <right_flank>CGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAAGTATGAATTTAACATATATTATAGAGCAATTTGTACCTATTTTTGCTGTTTCATGAGCTGATTTTTGATTTCTGTACCAAACAAAAATTTTTTATCAGTAGAATATTTTCAATTCATACTTGCGAACTTCGACAAACTGAAATGGATTTTATGAAAATCGGCAAGTGATTTTAAAAACTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTCCCAGATGTAGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTAGTACGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACCATGAACCACTTTAGACGTCCGCATGATTGGTTTTGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAAGTTCCTACATAGACCGGAGATAGTGGAGACGCAGACGGAACACAATGAAAAAACAGACAAGTAGATCGTTTTTATACACACACCGAAAGTGAAGGAGGAAAACTAAAGGTTGACTATAGTCACGTAGGTCAGCTATAGACGACCTTCTGGGAAGAAAAAAACAAAAGTGGAAAAGATCAAATTTTATCGTTTTTGCAAGGAAAATGCACTAGAGATAATATTGGGTGTAGGACAACAATGAACAAGGAACAATACGTGAGTTTAGGAGAAAATTCTGTGAGCTCGACTGACTACGACAAAGGTCAATGAAGTACATCGTGAAACAGAGAGAAATAGTCTAGATCATACAGTCTGAAAAAC</canonical>
            <polymorphic>GCAAGTATGAATTTAACATATATTATAGAGCAATTTGTACCTATTTTTGCTGTTTCATGAGCTGATTTTTGATTTCTGTACCAAACAAAAATTTTTTATCAGTAGAATATTTTCAATTCATACTTGCGAACTTCGACAAACTGAAATGGATTTTATGAAAATCGGCAAGTGATTTTAAAAACTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTCCCAGATGTAGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTAGTMCGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACCATGAACCACTTTAGACGTCCGCATGATTGGTTTTGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAAGTTCCTACATAGACCGGAGATAGTGGAGACGCAGACGGAACACAATGAAAAAACAGACAAGTAGATCGTTTTTATACACACACCGAAAGTGAAGGAGGAAAACTAAAGGTTGACTATAGTCACGTAGGTCAGCTATAGACGACCTTCTGGGAAGAAAAAAACAAAAGTGGAAAAGATCAAATTTTATCGTTTTTGCAAGGAAAATGCACTAGAGATAATATTGGGTGTAGGACAACAATGAACAAGGAACAATACGTGAGTTTAGGAGAAAATTCTGTGAGCTCGACTGACTACGACAAAGGTCAATGAAGTACATCGTGAAACAGAGAGAAATAGTCTAGATCATACAGTCTGAAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>453 379 48 41 41 38</canonical_bands>
                <polymorphic_bands>494 379 48 41 38</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>459 182 132 106 80 41</canonical_bands>
                <polymorphic_bands>459 182 132 121 106</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCAGTTTCAATGAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GGTGAGTTTTTCAATATTTTTATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTCCCAGATGTAGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTAGTACGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTCCCAGATGTAGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTAGTMCGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8166</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>128971</contig_pos>
        <strand>+</strand>
        <context>ACGTCCGCAT[A/G]ATTGGTTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAATAAAAATATTGAAAAACTCACCATGAACCACTTTAGACGTCCGCAT</left_flank>
        <right_flank>ATTGGTTTTGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTTATCAGTAGAATATTTTCAATTCATACTTGCGAACTTCGACAAACTGAAATGGATTTTATGAAAATCGGCAAGTGATTTTAAAAACTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTCCCAGATGTAGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTAGTACGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACCATGAACCACTTTAGACGTCCGCATGATTGGTTTTGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAAGTTCCTACATAGACCGGAGATAGTGGAGACGCAGACGGAACACAATGAAAAAACAGACAAGTAGATCGTTTTTATACACACACCGAAAGTGAAGGAGGAAAACTAAAGGTTGACTATAGTCACGTAGGTCAGCTATAGACGACCTTCTGGGAAGAAAAAAACAAAAGTGGAAAAGATCAAATTTTATCGTTTTTGCAAGGAAAATGCACTAGAGATAATATTGGGTGTAGGACAACAATGAACAAGGAACAATACGTGAGTTTAGGAGAAAATTCTGTGAGCTCGACTGACTACGACAAAGGTCAATGAAGTACATCGTGAAACAGAGAGAAATAGTCTAGATCATACAGTCTGAAAAACACCTTTATTGTAGATTTTCCCAATAAAGGTATGACTTTAGGCTTCCTTCTTTGATTTTGGAAGTTCACACATGAAAACCTTAAAAAAATG</canonical>
            <polymorphic>ATTTTTTATCAGTAGAATATTTTCAATTCATACTTGCGAACTTCGACAAACTGAAATGGATTTTATGAAAATCGGCAAGTGATTTTAAAAACTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTCCCAGATGTAGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTAGTACGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACCATGAACCACTTTAGACGTCCGCATRATTGGTTTTGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAAGTTCCTACATAGACCGGAGATAGTGGAGACGCAGACGGAACACAATGAAAAAACAGACAAGTAGATCGTTTTTATACACACACCGAAAGTGAAGGAGGAAAACTAAAGGTTGACTATAGTCACGTAGGTCAGCTATAGACGACCTTCTGGGAAGAAAAAAACAAAAGTGGAAAAGATCAAATTTTATCGTTTTTGCAAGGAAAATGCACTAGAGATAATATTGGGTGTAGGACAACAATGAACAAGGAACAATACGTGAGTTTAGGAGAAAATTCTGTGAGCTCGACTGACTACGACAAAGGTCAATGAAGTACATCGTGAAACAGAGAGAAATAGTCTAGATCATACAGTCTGAAAAACACCTTTATTGTAGATTTTCCCAATAAAGGTATGACTTTAGGCTTCCTTCTTTGATTTTGGAAGTTCACACATGAAAACCTTAAAAAAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>483 475 22 20</canonical_bands>
                <polymorphic_bands>505 475 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTTTTAGGCTTTTTCTCAA</pcr_primer_p1>
		<pcr_primer_p2>CTTTAGTTTTCCTCCTTCACTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACCATGAACCACTTTAGACGTCCGCATGATTGGTTTTGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAAGTTCCTACATAGACCGGAGATAGTGGAGACGCAGACGGAACACAATGAAAAAACAGACAAGTAGATCGTTTTTATACACACACCGAAAGTGAAGGAGGAAAACTAAAG</canonical_amplicon>
		<polymorphic_amplicon>CGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACCATGAACCACTTTAGACGTCCGCATRATTGGTTTTGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAAGTTCCTACATAGACCGGAGATAGTGGAGACGCAGACGGAACACAATGAAAAAACAGACAAGTAGATCGTTTTTATACACACACCGAAAGTGAAGGAGGAAAACTAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8167</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>129028</contig_pos>
        <strand>+</strand>
        <context>TCAAGTTCCT[A/C]CMTAGACCGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAAGTTCCT</left_flank>
        <right_flank>CATAGACCGGAGATAGTGGAGACGCAGACGGAACACAATGAAAAAACAGA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATTTTATGAAAATCGGCAAGTGATTTTAAAAACTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTCCCAGATGTAGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTAGTACGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACCATGAACCACTTTAGACGTCCGCATGATTGGTTTTGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAAGTTCCTACATAGACCGGAGATAGTGGAGACGCAGACGGAACACAATGAAAAAACAGACAAGTAGATCGTTTTTATACACACACCGAAAGTGAAGGAGGAAAACTAAAGGTTGACTATAGTCACGTAGGTCAGCTATAGACGACCTTCTGGGAAGAAAAAAACAAAAGTGGAAAAGATCAAATTTTATCGTTTTTGCAAGGAAAATGCACTAGAGATAATATTGGGTGTAGGACAACAATGAACAAGGAACAATACGTGAGTTTAGGAGAAAATTCTGTGAGCTCGACTGACTACGACAAAGGTCAATGAAGTACATCGTGAAACAGAGAGAAATAGTCTAGATCATACAGTCTGAAAAACACCTTTATTGTAGATTTTCCCAATAAAGGTATGACTTTAGGCTTCCTTCTTTGATTTTGGAAGTTCACACATGAAAACCTTAAAAAAATGTCATCGGCGGGGTTCAAACCAGTAACCACCAAATTGGTAGATTTCGATAAAATATCC</canonical>
            <polymorphic>GGATTTTATGAAAATCGGCAAGTGATTTTAAAAACTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTCCCAGATGTAGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTAGTACGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACCATGAACCACTTTAGACGTCCGCATGATTGGTTTTGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAAGTTCCTMCATAGACCGGAGATAGTGGAGACGCAGACGGAACACAATGAAAAAACAGACAAGTAGATCGTTTTTATACACACACCGAAAGTGAAGGAGGAAAACTAAAGGTTGACTATAGTCACGTAGGTCAGCTATAGACGACCTTCTGGGAAGAAAAAAACAAAAGTGGAAAAGATCAAATTTTATCGTTTTTGCAAGGAAAATGCACTAGAGATAATATTGGGTGTAGGACAACAATGAACAAGGAACAATACGTGAGTTTAGGAGAAAATTCTGTGAGCTCGACTGACTACGACAAAGGTCAATGAAGTACATCGTGAAACAGAGAGAAATAGTCTAGATCATACAGTCTGAAAAACACCTTTATTGTAGATTTTCCCAATAAAGGTATGACTTTAGGCTTCCTTCTTTGATTTTGGAAGTTCACACATGAAAACCTTAAAAAAATGTCATCGGCGGGGTTCAAACCAGTAACCACCAAATTGGTAGATTTCGATAAAATATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTTTAGGCTTTTTCTCAA</pcr_primer_p1>
		<pcr_primer_p2>CTTTAGTTTTCCTCCTTCACTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACCATGAACCACTTTAGACGTCCGCATGATTGGTTTTGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAAGTTCCTACATAGACCGGAGATAGTGGAGACGCAGACGGAACACAATGAAAAAACAGACAAGTAGATCGTTTTTATACACACACCGAAAGTGAAGGAGGAAAACTAAAG</canonical_amplicon>
		<polymorphic_amplicon>CGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACCATGAACCACTTTAGACGTCCGCATGATTGGTTTTGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAAGTTCCTMCATAGACCGGAGATAGTGGAGACGCAGACGGAACACAATGAAAAAACAGACAAGTAGATCGTTTTTATACACACACCGAAAGTGAAGGAGGAAAACTAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8168</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>129030</contig_pos>
        <strand>+</strand>
        <context>AAGTTCCTMC[A/C]TAGACCGGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAAGTTCCTAC</left_flank>
        <right_flank>TAGACCGGAGATAGTGGAGACGCAGACGGAACACAATGAAAAAACAGACA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTATGAAAATCGGCAAGTGATTTTAAAAACTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTCCCAGATGTAGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTAGTACGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACCATGAACCACTTTAGACGTCCGCATGATTGGTTTTGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAAGTTCCTACATAGACCGGAGATAGTGGAGACGCAGACGGAACACAATGAAAAAACAGACAAGTAGATCGTTTTTATACACACACCGAAAGTGAAGGAGGAAAACTAAAGGTTGACTATAGTCACGTAGGTCAGCTATAGACGACCTTCTGGGAAGAAAAAAACAAAAGTGGAAAAGATCAAATTTTATCGTTTTTGCAAGGAAAATGCACTAGAGATAATATTGGGTGTAGGACAACAATGAACAAGGAACAATACGTGAGTTTAGGAGAAAATTCTGTGAGCTCGACTGACTACGACAAAGGTCAATGAAGTACATCGTGAAACAGAGAGAAATAGTCTAGATCATACAGTCTGAAAAACACCTTTATTGTAGATTTTCCCAATAAAGGTATGACTTTAGGCTTCCTTCTTTGATTTTGGAAGTTCACACATGAAAACCTTAAAAAAATGTCATCGGCGGGGTTCAAACCAGTAACCACCAAATTGGTAGATTTCGATAAAATATCCCA</canonical>
            <polymorphic>ATTTTATGAAAATCGGCAAGTGATTTTAAAAACTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTCCCAGATGTAGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTAGTACGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACCATGAACCACTTTAGACGTCCGCATGATTGGTTTTGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAAGTTCCTACMTAGACCGGAGATAGTGGAGACGCAGACGGAACACAATGAAAAAACAGACAAGTAGATCGTTTTTATACACACACCGAAAGTGAAGGAGGAAAACTAAAGGTTGACTATAGTCACGTAGGTCAGCTATAGACGACCTTCTGGGAAGAAAAAAACAAAAGTGGAAAAGATCAAATTTTATCGTTTTTGCAAGGAAAATGCACTAGAGATAATATTGGGTGTAGGACAACAATGAACAAGGAACAATACGTGAGTTTAGGAGAAAATTCTGTGAGCTCGACTGACTACGACAAAGGTCAATGAAGTACATCGTGAAACAGAGAGAAATAGTCTAGATCATACAGTCTGAAAAACACCTTTATTGTAGATTTTCCCAATAAAGGTATGACTTTAGGCTTCCTTCTTTGATTTTGGAAGTTCACACATGAAAACCTTAAAAAAATGTCATCGGCGGGGTTCAAACCAGTAACCACCAAATTGGTAGATTTCGATAAAATATCCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTTTAGGCTTTTTCTCAA</pcr_primer_p1>
		<pcr_primer_p2>CTTTAGTTTTCCTCCTTCACTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACCATGAACCACTTTAGACGTCCGCATGATTGGTTTTGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAAGTTCCTACATAGACCGGAGATAGTGGAGACGCAGACGGAACACAATGAAAAAACAGACAAGTAGATCGTTTTTATACACACACCGAAAGTGAAGGAGGAAAACTAAAG</canonical_amplicon>
		<polymorphic_amplicon>CGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACCATGAACCACTTTAGACGTCCGCATGATTGGTTTTGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAAGTTCCTACMTAGACCGGAGATAGTGGAGACGCAGACGGAACACAATGAAAAAACAGACAAGTAGATCGTTTTTATACACACACCGAAAGTGAAGGAGGAAAACTAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8169</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>133082</contig_pos>
        <strand></strand>
        <context>GATGAATCCA[G/A]AAAGCCATCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCATTGGGAAAACAAACAAAAAATCTTGTGCAGAACTTGGGATGAATCCA</left_flank>
        <right_flank>AAAGCCATCAAATGACCTAGTACGCTCAACTATCGTAGACCTAGCATACG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAAAAAGTGCATATACACATTTTGACAGGGGCTTTTTGAGCGTGTCAACTAACCCCTGTCAAAAAATAAGAAAATTCTGTAAGCCTTTCTAAAACGACCTCCCTTGTAAGGGTTAAACCGTTTGTTGTATTAGGACTGTAACGCCACTAGGACTAGAGTCGGAAAGTTCATAAAAGCTATTCATAAGAGAGTGCCTGCTCAGCTCATTACCTGCGCTTCAGTTTTTCCTCCATTTTTCTTCATTGCCTCCTCAAATCCCTTTGGTAGTGGAATCTTATCACATTCGGGTTGTCCCATAACTCCACAGGTCTGCAAAAAAATAATTTTCTGCTTCATGGAGGTTTCATGATCGGCTAGGATTATTAGTTTGCAATTGCAAGGTTGCTTAAGCCGTCATCAATACCGATAAAACTGCGATAGATCTGACAATTTCCAGCTGTAGAGCCGTCATTGGGAAAACAAACAAAAAATCTTGTGCAGAACTTGGGATGAATCCAGAAAGCCATCAAATGACCTAGTACGCTCAACTATCGTAGACCTAGCATACGAATGAGAATCATTCTAAAAGTTCTAGAATAAGCAGTTTGAATATTCTGAATTTTTGAAAATCGAGATATTGAAACAGAAGATTTATTGACTACCGCGCCTTACTGATTACTTTACTTTTTGAAAAAAAGAATTTCTGTGTTTTTGAACTGAAGAACGACTGGTTGGCAGCGGCATAGTCATTGCCAGCCGCTGCCGGCCGATTTTGACAGTAAGCTAGATAAAGCGAAACCATGTATATTTTAAGATTGTCTGCGATTCTCACCAATATACCCTCCTCAAACGCGCTCCACTGAACTCCACTCACCGTCTCCTTATAAAACACAGAAGATCCCATTCCCATACACTGATGTTTCACATTATCCACCACCACTGATTCTCCTAATTTCATCTCGGTTCCATCTTTTCGTCTGCATCCTTCGATGGTATAAACTCCATATTTCTGACACTTG</canonical>
            <polymorphic>TGGAAAAAGTGCATATACACATTTTGACAGGGGCTTTTTGAGCGTGTCAACTAACCCCTGTCAAAAAATAAGAAAATTCTGTAAGCCTTTCTAAAACGACCTCCCTTGTAAGGGTTAAACCGTTTGTTGTATTAGGACTGTAACGCCACTAGGACTAGAGTCGGAAAGTTCATAAAAGCTATTCATAAGAGAGTGCCTGCTCAGCTCATTACCTGCGCTTCAGTTTTTCCTCCATTTTTCTTCATTGCCTCCTCAAATCCCTTTGGTAGTGGAATCTTATCACATTCGGGTTGTCCCATAACTCCACAGGTCTGCAAAAAAATAATTTTCTGCTTCATGGAGGTTTCATGATCGGCTAGGATTATTAGTTTGCAATTGCAAGGTTGCTTAAGCCGTCATCAATACCGATAAAACTGCGATAGATCTGACAATTTCCAGCTGTAGAGCCGTCATTGGGAAAACAAACAAAAAATCTTGTGCAGAACTTGGGATGAATCCARAAAGCCATCAAATGACCTAGTACGCTCAACTATCGTAGACCTAGCATACGAATGAGAATCATTCTAAAAGTTCTAGAATAAGCAGTTTGAATATTCTGAATTTTTGAAAATCGAGATATTGAAACAGAAGATTTATTGACTACCGCGCCTTACTGATTACTTTACTTTTTGAAAAAAAGAATTTCTGTGTTTTTGAACTGAAGAACGACTGGTTGGCAGCGGCATAGTCATTGCCAGCCGCTGCCGGCCGATTTTGACAGTAAGCTAGATAAAGCGAAACCATGTATATTTTAAGATTGTCTGCGATTCTCACCAATATACCCTCCTCAAACGCGCTCCACTGAACTCCACTCACCGTCTCCTTATAAAACACAGAAGATCCCATTCCCATACACTGATGTTTCACATTATCCACCACCACTGATTCTCCTAATTTCATCTCGGTTCCATCTTTTCGTCTGCATCCTTCGATGGTATAAACTCCATATTTCTGACACTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>388 347 150 76 39</canonical_bands>
                <polymorphic_bands>388 347 226 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATACCGATAAAACTGCGATAG</pcr_primer_p1>
		<pcr_primer_p2>CGGTAGTCAATAAATCTTCTGTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATACCGATAAAACTGCGATAGATCTGACAATTTCCAGCTGTAGAGCCGTCATTGGGAAAACAAACAAAAAATCTTGTGCAGAACTTGGGATGAATCCAGAAAGCCATCAAATGACCTAGTACGCTCAACTATCGTAGACCTAGCATACGAATGAGAATCATTCTAAAAGTTCTAGAATAAGCAGTTTGAATATTCTGAATTTTTGAAAATCGAGATATTGAAACAGAAGATTTATTGACTACCG</canonical_amplicon>
		<polymorphic_amplicon>AATACCGATAAAACTGCGATAGATCTGACAATTTCCAGCTGTAGAGCCGTCATTGGGAAAACAAACAAAAAATCTTGTGCAGAACTTGGGATGAATCCARAAAGCCATCAAATGACCTAGTACGCTCAACTATCGTAGACCTAGCATACGAATGAGAATCATTCTAAAAGTTCTAGAATAAGCAGTTTGAATATTCTGAATTTTTGAAAATCGAGATATTGAAACAGAAGATTTATTGACTACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8170</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>200376</contig_pos>
        <strand>+</strand>
        <context>TATTTCACAA[C/G]TAATGTCttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AACTTACTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAA</left_flank>
        <right_flank>TAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTTACTGAACTGAGATATTTGAGCTCGAAGTGCTGGTATACCCTGGATATCGCCGTTTTATGGTAAAACGGCTTGTTTTATTACATTTTTCTCTGCTTCATATCTTTCTCTAACTATCTTCTTTCCTATAACTATATTCATTTTCGGATAACTTCCAGATATGCCGTGCCCATTAAAATGTCACGGAGGTCCTGGCTACGCATCCCCTGCGGATGCCATTAAAGGTCCCAGAGAAGAAGTTCTATTTGTGACCGCTCCACACGCCCGAGATGGACCTGATGCCATATTTACGGTAAATGTGAATCCGGAGAGTGAGACGTTTTGTCAGGTAAGACGATTTTGATGATTATATTTCTGGAAAATAAAGAAAGATGAATGATTTGCGTTCACGATACCAGGTAAATTTGAAGATCGTGAAACAGCAGAATTTGAAATTTAGTTGTTTAAAACTTACTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGCAAATAGCTTCATATATACCTAGTTCCTGAAACAGGAAAATTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGTCGCCACACCCCCATTTTGTTACATCATCCACACAATCAAACAATATGTTCCTTAAATTCGTTTGTTACAGATAATCAGTCGAGTGGATGTTCCAAACATTGGAGACGAAGTTCATCATACTGGCTGGAACGCTTGCTCATCCTGTCATGATAAACCGACTGAGAAGAGGTAGGAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCAGAAAGTTGT</canonical>
            <polymorphic>CTCTTACTGAACTGAGATATTTGAGCTCGAAGTGCTGGTATACCCTGGATATCGCCGTTTTATGGTAAAACGGCTTGTTTTATTACATTTTTCTCTGCTTCATATCTTTCTCTAACTATCTTCTTTCCTATAACTATATTCATTTTCGGATAACTTCCAGATATGCCGTGCCCATTAAAATGTCACGGAGGTCCTGGCTACGCATCCCCTGCGGATGCCATTAAAGGTCCCAGAGAAGAAGTTCTATTTGTGACCGCTCCACACGCCCGAGATGGACCTGATGCCATATTTACGGTAAATGTGAATCCGGAGAGTGAGACGTTTTGTCAGGTAAGACGATTTTGATGATTATATTTCTGGAAAATAAAGAAAGATGAATGATTTGCGTTCACGATACCAGGTAAATTTGAAGATCGTGAAACAGCAGAATTTGAAATTTAGTTGTTTAAAACTTACTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAASTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGCAAATAGCTTCATATATACCTAGTTCCTGAAACAGGAAAATTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGTCGCCACACCCCCATTTTGTTACATCATCCACACAATCAAACAATATGTTCCTTAAATTCGTTTGTTACAGATAATCAGTCGAGTGGATGTTCCAAACATTGGAGACGAAGTTCATCATACTGGCTGGAACGCTTGCTCATCCTGTCATGATAAACCGACTGAGAAGAGGTAGGAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCAGAAAGTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGTGAAACAGCAGAATTT</pcr_primer_p1>
		<pcr_primer_p2>TGCGCAAGTCATTAAGATACTA</pcr_primer_p2>
		<pcr_amplicon_size>294</pcr_amplicon_size>
		<canonical_amplicon>ATCGTGAAACAGCAGAATTTGAAATTTAGTTGTTTAAAACTTACTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGCA</canonical_amplicon>
		<polymorphic_amplicon>ATCGTGAAACAGCAGAATTTGAAATTTAGTTGTTTAAAACTTACTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAASTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8171</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>200513</contig_pos>
        <strand>+</strand>
        <context>GCCGCCAATC[A/G]CCCCGTKCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATC</left_flank>
        <right_flank>CCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCATTTTCGGATAACTTCCAGATATGCCGTGCCCATTAAAATGTCACGGAGGTCCTGGCTACGCATCCCCTGCGGATGCCATTAAAGGTCCCAGAGAAGAAGTTCTATTTGTGACCGCTCCACACGCCCGAGATGGACCTGATGCCATATTTACGGTAAATGTGAATCCGGAGAGTGAGACGTTTTGTCAGGTAAGACGATTTTGATGATTATATTTCTGGAAAATAAAGAAAGATGAATGATTTGCGTTCACGATACCAGGTAAATTTGAAGATCGTGAAACAGCAGAATTTGAAATTTAGTTGTTTAAAACTTACTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGCAAATAGCTTCATATATACCTAGTTCCTGAAACAGGAAAATTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGTCGCCACACCCCCATTTTGTTACATCATCCACACAATCAAACAATATGTTCCTTAAATTCGTTTGTTACAGATAATCAGTCGAGTGGATGTTCCAAACATTGGAGACGAAGTTCATCATACTGGCTGGAACGCTTGCTCATCCTGTCATGATAAACCGACTGAGAAGAGGTAGGAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCAGAAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGAATTTTGTTAGTTGATAATTTTTGATAACTAGTGCAGAAAGCATGATAACTTGGGTCAAAGTAGACGCTCCTTGTGGGGGAGGGTCCTTCTGCTTACCTTCTAG</canonical>
            <polymorphic>ATTCATTTTCGGATAACTTCCAGATATGCCGTGCCCATTAAAATGTCACGGAGGTCCTGGCTACGCATCCCCTGCGGATGCCATTAAAGGTCCCAGAGAAGAAGTTCTATTTGTGACCGCTCCACACGCCCGAGATGGACCTGATGCCATATTTACGGTAAATGTGAATCCGGAGAGTGAGACGTTTTGTCAGGTAAGACGATTTTGATGATTATATTTCTGGAAAATAAAGAAAGATGAATGATTTGCGTTCACGATACCAGGTAAATTTGAAGATCGTGAAACAGCAGAATTTGAAATTTAGTTGTTTAAAACTTACTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCRCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGCAAATAGCTTCATATATACCTAGTTCCTGAAACAGGAAAATTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGTCGCCACACCCCCATTTTGTTACATCATCCACACAATCAAACAATATGTTCCTTAAATTCGTTTGTTACAGATAATCAGTCGAGTGGATGTTCCAAACATTGGAGACGAAGTTCATCATACTGGCTGGAACGCTTGCTCATCCTGTCATGATAAACCGACTGAGAAGAGGTAGGAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCAGAAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGAATTTTGTTAGTTGATAATTTTTGATAACTAGTGCAGAAAGCATGATAACTTGGGTCAAAGTAGACGCTCCTTGTGGGGGAGGGTCCTTCTGCTTACCTTCTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGTTAAAAGGGGGTATAGGTT</pcr_primer_p1>
		<pcr_primer_p2>GCGCAAGTCATTAAGATACTACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGC</canonical_amplicon>
		<polymorphic_amplicon>CTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCRCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8172</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>200520</contig_pos>
        <strand>+</strand>
        <context>ATCRCCCCGT[G/T]CTTGATAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGT</left_flank>
        <right_flank>CTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGGATAACTTCCAGATATGCCGTGCCCATTAAAATGTCACGGAGGTCCTGGCTACGCATCCCCTGCGGATGCCATTAAAGGTCCCAGAGAAGAAGTTCTATTTGTGACCGCTCCACACGCCCGAGATGGACCTGATGCCATATTTACGGTAAATGTGAATCCGGAGAGTGAGACGTTTTGTCAGGTAAGACGATTTTGATGATTATATTTCTGGAAAATAAAGAAAGATGAATGATTTGCGTTCACGATACCAGGTAAATTTGAAGATCGTGAAACAGCAGAATTTGAAATTTAGTTGTTTAAAACTTACTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGCAAATAGCTTCATATATACCTAGTTCCTGAAACAGGAAAATTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGTCGCCACACCCCCATTTTGTTACATCATCCACACAATCAAACAATATGTTCCTTAAATTCGTTTGTTACAGATAATCAGTCGAGTGGATGTTCCAAACATTGGAGACGAAGTTCATCATACTGGCTGGAACGCTTGCTCATCCTGTCATGATAAACCGACTGAGAAGAGGTAGGAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCAGAAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGAATTTTGTTAGTTGATAATTTTTGATAACTAGTGCAGAAAGCATGATAACTTGGGTCAAAGTAGACGCTCCTTGTGGGGGAGGGTCCTTCTGCTTACCTTCTAGCTTCAAC</canonical>
            <polymorphic>TTCGGATAACTTCCAGATATGCCGTGCCCATTAAAATGTCACGGAGGTCCTGGCTACGCATCCCCTGCGGATGCCATTAAAGGTCCCAGAGAAGAAGTTCTATTTGTGACCGCTCCACACGCCCGAGATGGACCTGATGCCATATTTACGGTAAATGTGAATCCGGAGAGTGAGACGTTTTGTCAGGTAAGACGATTTTGATGATTATATTTCTGGAAAATAAAGAAAGATGAATGATTTGCGTTCACGATACCAGGTAAATTTGAAGATCGTGAAACAGCAGAATTTGAAATTTAGTTGTTTAAAACTTACTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTKCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGCAAATAGCTTCATATATACCTAGTTCCTGAAACAGGAAAATTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGTCGCCACACCCCCATTTTGTTACATCATCCACACAATCAAACAATATGTTCCTTAAATTCGTTTGTTACAGATAATCAGTCGAGTGGATGTTCCAAACATTGGAGACGAAGTTCATCATACTGGCTGGAACGCTTGCTCATCCTGTCATGATAAACCGACTGAGAAGAGGTAGGAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCAGAAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGAATTTTGTTAGTTGATAATTTTTGATAACTAGTGCAGAAAGCATGATAACTTGGGTCAAAGTAGACGCTCCTTGTGGGGGAGGGTCCTTCTGCTTACCTTCTAGCTTCAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>217 197 150 136 94 85 50 33 25 13</canonical_bands>
                <polymorphic_bands>217 197 179 150 136 50 33 25 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGTTAAAAGGGGGTATAGGTT</pcr_primer_p1>
		<pcr_primer_p2>GCGCAAGTCATTAAGATACTACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGC</canonical_amplicon>
		<polymorphic_amplicon>CTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTKCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8173</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>200620</contig_pos>
        <strand>+</strand>
        <context>AAACAGGAAA[A/C]TTTTGGTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATGACTTGCGCAAATAGCTTCATATATACCTAGTTCCTGAAACAGGAAA</left_flank>
        <right_flank>TTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGTCGCCACACCCCCA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTGTGACCGCTCCACACGCCCGAGATGGACCTGATGCCATATTTACGGTAAATGTGAATCCGGAGAGTGAGACGTTTTGTCAGGTAAGACGATTTTGATGATTATATTTCTGGAAAATAAAGAAAGATGAATGATTTGCGTTCACGATACCAGGTAAATTTGAAGATCGTGAAACAGCAGAATTTGAAATTTAGTTGTTTAAAACTTACTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGCAAATAGCTTCATATATACCTAGTTCCTGAAACAGGAAAATTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGTCGCCACACCCCCATTTTGTTACATCATCCACACAATCAAACAATATGTTCCTTAAATTCGTTTGTTACAGATAATCAGTCGAGTGGATGTTCCAAACATTGGAGACGAAGTTCATCATACTGGCTGGAACGCTTGCTCATCCTGTCATGATAAACCGACTGAGAAGAGGTAGGAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCAGAAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGAATTTTGTTAGTTGATAATTTTTGATAACTAGTGCAGAAAGCATGATAACTTGGGTCAAAGTAGACGCTCCTTGTGGGGGAGGGTCCTTCTGCTTACCTTCTAGCTTCAACTAAATTTATCTCGGTTCTTGTGAAAGATATCAAAAAATGGTTAACTGATAAAACATTTTTCGATAACATGTTAAACATTTTGTCAGTTGGTTATTTTTTG</canonical>
            <polymorphic>TATTTGTGACCGCTCCACACGCCCGAGATGGACCTGATGCCATATTTACGGTAAATGTGAATCCGGAGAGTGAGACGTTTTGTCAGGTAAGACGATTTTGATGATTATATTTCTGGAAAATAAAGAAAGATGAATGATTTGCGTTCACGATACCAGGTAAATTTGAAGATCGTGAAACAGCAGAATTTGAAATTTAGTTGTTTAAAACTTACTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGCAAATAGCTTCATATATACCTAGTTCCTGAAACAGGAAAMTTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGTCGCCACACCCCCATTTTGTTACATCATCCACACAATCAAACAATATGTTCCTTAAATTCGTTTGTTACAGATAATCAGTCGAGTGGATGTTCCAAACATTGGAGACGAAGTTCATCATACTGGCTGGAACGCTTGCTCATCCTGTCATGATAAACCGACTGAGAAGAGGTAGGAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCAGAAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGAATTTTGTTAGTTGATAATTTTTGATAACTAGTGCAGAAAGCATGATAACTTGGGTCAAAGTAGACGCTCCTTGTGGGGGAGGGTCCTTCTGCTTACCTTCTAGCTTCAACTAAATTTATCTCGGTTCTTGTGAAAGATATCAAAAAATGGTTAACTGATAAAACATTTTTCGATAACATGTTAAACATTTTGTCAGTTGGTTATTTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>198 169 159 113 110 98 69 29 24 24 7</canonical_bands>
                <polymorphic_bands>198 193 159 113 110 98 69 29 24 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>198 159 110 98 97 91 78 69 24 24 23 16 7 6</canonical_bands>
                <polymorphic_bands>198 159 110 102 98 97 91 69 24 23 16 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGGGTATAGGTTGTTATTCTAC</pcr_primer_p1>
		<pcr_primer_p2>GTGTGGATGATGTAACAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>349</pcr_amplicon_size>
		<canonical_amplicon>GGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGCAAATAGCTTCATATATACCTAGTTCCTGAAACAGGAAAATTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGTCGCCACACCCCCATTTTGTTACATCATCCACAC</canonical_amplicon>
		<polymorphic_amplicon>GGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGCAAATAGCTTCATATATACCTAGTTCCTGAAACAGGAAAMTTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGTCGCCACACCCCCATTTTGTTACATCATCCACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8174</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>200658</contig_pos>
        <strand>+</strand>
        <context>TTTTCACTGT[C/T]GCMACACCCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAACAGGAAAATTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGT</left_flank>
        <right_flank>GCCACACCCCCATTTTGTTACATCATCCACACAATCAAACAATATGTTCC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCATATTTACGGTAAATGTGAATCCGGAGAGTGAGACGTTTTGTCAGGTAAGACGATTTTGATGATTATATTTCTGGAAAATAAAGAAAGATGAATGATTTGCGTTCACGATACCAGGTAAATTTGAAGATCGTGAAACAGCAGAATTTGAAATTTAGTTGTTTAAAACTTACTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGCAAATAGCTTCATATATACCTAGTTCCTGAAACAGGAAAATTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGTCGCCACACCCCCATTTTGTTACATCATCCACACAATCAAACAATATGTTCCTTAAATTCGTTTGTTACAGATAATCAGTCGAGTGGATGTTCCAAACATTGGAGACGAAGTTCATCATACTGGCTGGAACGCTTGCTCATCCTGTCATGATAAACCGACTGAGAAGAGGTAGGAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCAGAAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGAATTTTGTTAGTTGATAATTTTTGATAACTAGTGCAGAAAGCATGATAACTTGGGTCAAAGTAGACGCTCCTTGTGGGGGAGGGTCCTTCTGCTTACCTTCTAGCTTCAACTAAATTTATCTCGGTTCTTGTGAAAGATATCAAAAAATGGTTAACTGATAAAACATTTTTCGATAACATGTTAAACATTTTGTCAGTTGGTTATTTTTTGATATCTTTTATAGGAAATGAGATAACATGGCTCGAAAA</canonical>
            <polymorphic>GCCATATTTACGGTAAATGTGAATCCGGAGAGTGAGACGTTTTGTCAGGTAAGACGATTTTGATGATTATATTTCTGGAAAATAAAGAAAGATGAATGATTTGCGTTCACGATACCAGGTAAATTTGAAGATCGTGAAACAGCAGAATTTGAAATTTAGTTGTTTAAAACTTACTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGCAAATAGCTTCATATATACCTAGTTCCTGAAACAGGAAAATTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGTYGCCACACCCCCATTTTGTTACATCATCCACACAATCAAACAATATGTTCCTTAAATTCGTTTGTTACAGATAATCAGTCGAGTGGATGTTCCAAACATTGGAGACGAAGTTCATCATACTGGCTGGAACGCTTGCTCATCCTGTCATGATAAACCGACTGAGAAGAGGTAGGAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCAGAAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGAATTTTGTTAGTTGATAATTTTTGATAACTAGTGCAGAAAGCATGATAACTTGGGTCAAAGTAGACGCTCCTTGTGGGGGAGGGTCCTTCTGCTTACCTTCTAGCTTCAACTAAATTTATCTCGGTTCTTGTGAAAGATATCAAAAAATGGTTAACTGATAAAACATTTTTCGATAACATGTTAAACATTTTGTCAGTTGGTTATTTTTTGATATCTTTTATAGGAAATGAGATAACATGGCTCGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCATATATACCTAGTTCCTGAAACA</pcr_primer_p1>
		<pcr_primer_p2>AGGATTATTCCTACCTCTTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCATATATACCTAGTTCCTGAAACAGGAAAATTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGTCGCCACACCCCCATTTTGTTACATCATCCACACAATCAAACAATATGTTCCTTAAATTCGTTTGTTACAGATAATCAGTCGAGTGGATGTTCCAAACATTGGAGACGAAGTTCATCATACTGGCTGGAACGCTTGCTCATCCTGTCATGATAAACCGACTGAGAAGAGGTAGGAATAATCCT</canonical_amplicon>
		<polymorphic_amplicon>TTCATATATACCTAGTTCCTGAAACAGGAAAATTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGTYGCCACACCCCCATTTTGTTACATCATCCACACAATCAAACAATATGTTCCTTAAATTCGTTTGTTACAGATAATCAGTCGAGTGGATGTTCCAAACATTGGAGACGAAGTTCATCATACTGGCTGGAACGCTTGCTCATCCTGTCATGATAAACCGACTGAGAAGAGGTAGGAATAATCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8175</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>200661</contig_pos>
        <strand>+</strand>
        <context>TCACTGTYGC[A/C]ACACCCCCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACAGGAAAATTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGTCGC</left_flank>
        <right_flank>ACACCCCCATTTTGTTACATCATCCACACAATCAAACAATATGTTCCTTA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATTTACGGTAAATGTGAATCCGGAGAGTGAGACGTTTTGTCAGGTAAGACGATTTTGATGATTATATTTCTGGAAAATAAAGAAAGATGAATGATTTGCGTTCACGATACCAGGTAAATTTGAAGATCGTGAAACAGCAGAATTTGAAATTTAGTTGTTTAAAACTTACTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGCAAATAGCTTCATATATACCTAGTTCCTGAAACAGGAAAATTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGTCGCCACACCCCCATTTTGTTACATCATCCACACAATCAAACAATATGTTCCTTAAATTCGTTTGTTACAGATAATCAGTCGAGTGGATGTTCCAAACATTGGAGACGAAGTTCATCATACTGGCTGGAACGCTTGCTCATCCTGTCATGATAAACCGACTGAGAAGAGGTAGGAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCAGAAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGAATTTTGTTAGTTGATAATTTTTGATAACTAGTGCAGAAAGCATGATAACTTGGGTCAAAGTAGACGCTCCTTGTGGGGGAGGGTCCTTCTGCTTACCTTCTAGCTTCAACTAAATTTATCTCGGTTCTTGTGAAAGATATCAAAAAATGGTTAACTGATAAAACATTTTTCGATAACATGTTAAACATTTTGTCAGTTGGTTATTTTTTGATATCTTTTATAGGAAATGAGATAACATGGCTCGAAAATGG</canonical>
            <polymorphic>ATATTTACGGTAAATGTGAATCCGGAGAGTGAGACGTTTTGTCAGGTAAGACGATTTTGATGATTATATTTCTGGAAAATAAAGAAAGATGAATGATTTGCGTTCACGATACCAGGTAAATTTGAAGATCGTGAAACAGCAGAATTTGAAATTTAGTTGTTTAAAACTTACTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGCAAATAGCTTCATATATACCTAGTTCCTGAAACAGGAAAATTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGTCGCMACACCCCCATTTTGTTACATCATCCACACAATCAAACAATATGTTCCTTAAATTCGTTTGTTACAGATAATCAGTCGAGTGGATGTTCCAAACATTGGAGACGAAGTTCATCATACTGGCTGGAACGCTTGCTCATCCTGTCATGATAAACCGACTGAGAAGAGGTAGGAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCAGAAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGAATTTTGTTAGTTGATAATTTTTGATAACTAGTGCAGAAAGCATGATAACTTGGGTCAAAGTAGACGCTCCTTGTGGGGGAGGGTCCTTCTGCTTACCTTCTAGCTTCAACTAAATTTATCTCGGTTCTTGTGAAAGATATCAAAAAATGGTTAACTGATAAAACATTTTTCGATAACATGTTAAACATTTTGTCAGTTGGTTATTTTTTGATATCTTTTATAGGAAATGAGATAACATGGCTCGAAAATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>236 119 101 100 78 75 57 53 42 27 23 22 18 14 13 9 9 2 2</canonical_bands>
                <polymorphic_bands>236 119 101 100 78 75 57 53 42 27 23 22 18 14 13 11 9 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCATATATACCTAGTTCCTGAAACA</pcr_primer_p1>
		<pcr_primer_p2>AGGATTATTCCTACCTCTTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCATATATACCTAGTTCCTGAAACAGGAAAATTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGTCGCCACACCCCCATTTTGTTACATCATCCACACAATCAAACAATATGTTCCTTAAATTCGTTTGTTACAGATAATCAGTCGAGTGGATGTTCCAAACATTGGAGACGAAGTTCATCATACTGGCTGGAACGCTTGCTCATCCTGTCATGATAAACCGACTGAGAAGAGGTAGGAATAATCCT</canonical_amplicon>
		<polymorphic_amplicon>TTCATATATACCTAGTTCCTGAAACAGGAAAATTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGTCGCMACACCCCCATTTTGTTACATCATCCACACAATCAAACAATATGTTCCTTAAATTCGTTTGTTACAGATAATCAGTCGAGTGGATGTTCCAAACATTGGAGACGAAGTTCATCATACTGGCTGGAACGCTTGCTCATCCTGTCATGATAAACCGACTGAGAAGAGGTAGGAATAATCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8176</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>201579</contig_pos>
        <strand></strand>
        <context>CGGTTTCACG[G/A]ATTCTATGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TACAACTTGGTAGCTTATCATGAGAATAAAAAAAAATCCACGGTTTCACG</left_flank>
        <right_flank>ATTCTATGAGTTTGAAAAAATCTACCTCTGAGATCATGCAGCGCTTATCT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGATAACATGTTAAACATTTTGTCAGTTGGTTATTTTTTGATATCTTTTATAGGAAATGAGATAACATGGCTCGAAAATGGGTCTTAAGAAATACGGTTGGATGACCGAATTGATATTTTCTGAAATTTTTTTTCCTGCTTCATATTGAAGACTTCTTTTCAATGTTTATTCGCTTTTCTTGATTTAGCTTGAAAATGTTCAACGCTGAGTTTGCGACCGCGTAGCTGCACGGCGCTTTTTGAGTTCAATTTCTTAATTGAAACATGAGACTTAAAAAATTTCGGTTTCATAAATCCTAGGAGTTGGGACCATACCTTCCTCTTACATTAGGATTATTGTTGTCAAATATTCTAATAGAAGGATCTCCTTAACTCTCAGTTAAAGGCTACAGTCAACTTACTGCGTAGCTTGTACCACGGCACTCTTAGAAGTTCAAATTCAACCTCTTACAACTTGGTAGCTTATCATGAGAATAAAAAAAAATCCACGGTTTCACGGATTCTATGAGTTTGAAAAAATCTACCTCTGAGATCATGCAGCGCTTATCTTTCCAACCGTAAACACTCCAATAGAAGGATCTATCTAACTCTTAACTTTGAGTCAATTCATTTCGGCTCTTGTAAAAGATGTCAAAAAGTTGCCAACTGATAAGTTGTTTATCATAATATCAGCATTATTTTATCCGTTTATCGTTTTCAAATTTTTTTAACAGGAAATGAGATAAATTGGCTCAAAGGTGACAGTGTGCTAGTACGAGTCACAGTGTATGTAGGGTACAGCCAAATTCGCAACCGCGTAGCACCCGGTATAAAGGCTCAACTTTGCAACTGCGTAGCTGTACCACAGCACTCTTAGAAGTTCAAATTCAACTTCTTCCAATTAGGTAGCCTATCATGAGAATTTAAAAAAAAATCTACGGTTTTATAAATCCTATGAGTTTGGACAATATCTGCTCAGGCAATACATCTCCGATGAGTTTATTTATTTATTTATTTACG</canonical>
            <polymorphic>TCGATAACATGTTAAACATTTTGTCAGTTGGTTATTTTTTGATATCTTTTATAGGAAATGAGATAACATGGCTCGAAAATGGGTCTTAAGAAATACGGTTGGATGACCGAATTGATATTTTCTGAAATTTTTTTTCCTGCTTCATATTGAAGACTTCTTTTCAATGTTTATTCGCTTTTCTTGATTTAGCTTGAAAATGTTCAACGCTGAGTTTGCGACCGCGTAGCTGCACGGCGCTTTTTGAGTTCAATTTCTTAATTGAAACATGAGACTTAAAAAATTTCGGTTTCATAAATCCTAGGAGTTGGGACCATACCTTCCTCTTACATTAGGATTATTGTTGTCAAATATTCTAATAGAAGGATCTCCTTAACTCTCAGTTAAAGGCTACAGTCAACTTACTGCGTAGCTTGTACCACGGCACTCTTAGAAGTTCAAATTCAACCTCTTACAACTTGGTAGCTTATCATGAGAATAAAAAAAAATCCACGGTTTCACGRATTCTATGAGTTTGAAAAAATCTACCTCTGAGATCATGCAGCGCTTATCTTTCCAACCGTAAACACTCCAATAGAAGGATCTATCTAACTCTTAACTTTGAGTCAATTCATTTCGGCTCTTGTAAAAGATGTCAAAAAGTTGCCAACTGATAAGTTGTTTATCATAATATCAGCATTATTTTATCCGTTTATCGTTTTCAAATTTTTTTAACAGGAAATGAGATAAATTGGCTCAAAGGTGACAGTGTGCTAGTACGAGTCACAGTGTATGTAGGGTACAGCCAAATTCGCAACCGCGTAGCACCCGGTATAAAGGCTCAACTTTGCAACTGCGTAGCTGTACCACAGCACTCTTAGAAGTTCAAATTCAACTTCTTCCAATTAGGTAGCCTATCATGAGAATTTAAAAAAAAATCTACGGTTTTATAAATCCTATGAGTTTGGACAATATCTGCTCAGGCAATACATCTCCGATGAGTTTATTTATTTATTTATTTACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>500 243 157 100</canonical_bands>
                <polymorphic_bands>600 243 157</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTACAACTTGGTAGCTTATCAT</pcr_primer_p1>
		<pcr_primer_p2>CCTACATACACTGTGACTCGTACT</pcr_primer_p2>
		<pcr_amplicon_size>329</pcr_amplicon_size>
		<canonical_amplicon>TCTTACAACTTGGTAGCTTATCATGAGAATAAAAAAAAATCCACGGTTTCACGGATTCTATGAGTTTGAAAAAATCTACCTCTGAGATCATGCAGCGCTTATCTTTCCAACCGTAAACACTCCAATAGAAGGATCTATCTAACTCTTAACTTTGAGTCAATTCATTTCGGCTCTTGTAAAAGATGTCAAAAAGTTGCCAACTGATAAGTTGTTTATCATAATATCAGCATTATTTTATCCGTTTATCGTTTTCAAATTTTTTTAACAGGAAATGAGATAAATTGGCTCAAAGGTGACAGTGTGCTAGTACGAGTCACAGTGTATGTAGG</canonical_amplicon>
		<polymorphic_amplicon>TCTTACAACTTGGTAGCTTATCATGAGAATAAAAAAAAATCCACGGTTTCACGRATTCTATGAGTTTGAAAAAATCTACCTCTGAGATCATGCAGCGCTTATCTTTCCAACCGTAAACACTCCAATAGAAGGATCTATCTAACTCTTAACTTTGAGTCAATTCATTTCGGCTCTTGTAAAAGATGTCAAAAAGTTGCCAACTGATAAGTTGTTTATCATAATATCAGCATTATTTTATCCGTTTATCGTTTTCAAATTTTTTTAACAGGAAATGAGATAAATTGGCTCAAAGGTGACAGTGTGCTAGTACGAGTCACAGTGTATGTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8177</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>201362</contig_pos>
        <strand>+</strand>
        <context>TTAAAAAATT[C/T]CGGTTTCATA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCGCTTTTTGAGTTCAATTTCTTAATTGAAACATGAGACTTAAAAAATT</left_flank>
        <right_flank>CGGTTTCATAAATCCTAGGAGTTGGGACCATACCTTCCTCTTACATTAGG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCAGAAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGAATTTTGTTAGTTGATAATTTTTGATAACTAGTGCAGAAAGCATGATAACTTGGGTCAAAGTAGACGCTCCTTGTGGGGGAGGGTCCTTCTGCTTACCTTCTAGCTTCAACTAAATTTATCTCGGTTCTTGTGAAAGATATCAAAAAATGGTTAACTGATAAAACATTTTTCGATAACATGTTAAACATTTTGTCAGTTGGTTATTTTTTGATATCTTTTATAGGAAATGAGATAACATGGCTCGAAAATGGGTCTTAAGAAATACGGTTGGATGACCGAATTGATATTTTCTGAAATTTTTTTTCCTGCTTCATATTGAAGACTTCTTTTCAATGTTTATTCGCTTTTCTTGATTTAGCTTGAAAATGTTCAACGCTGAGTTTGCGACCGCGTAGCTGCACGGCGCTTTTTGAGTTCAATTTCTTAATTGAAACATGAGACTTAAAAAATTTCGGTTTCATAAATCCTAGGAGTTGGGACCATACCTTCCTCTTACATTAGGATTATTGTTGTCAAATATTCTAATAGAAGGATCTCCTTAACTCTCAGTTAAAGGCTACAGTCAACTTACTGCGTAGCTTGTACCACGGCACTCTTAGAAGTTCAAATTCAACCTCTTACAACTTGGTAGCTTATCATGAGAATAAAAAAAAATCCACGGTTTCACGGATTCTATGAGTTTGAAAAAATCTACCTCTGAGATCATGCAGCGCTTATCTTTCCAACCGTAAACACTCCAATAGAAGGATCTATCTAACTCTTAACTTTGAGTCAATTCATTTCGGCTCTTGTAAAAGATGTCAAAAAGTTGCCAACTGATAAGTTGTTTATCATAATATCAGCATTATTTTATCCGTTTATCGTTTTCAAATTTTTTTAACAGGAAATGAGATAAATTGGCTCAAAGGTGACAGTGTGCTAGTACGAGTCACAGTGTATGTAGGGTACAGCC</canonical>
            <polymorphic>TATCAGAAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGAATTTTGTTAGTTGATAATTTTTGATAACTAGTGCAGAAAGCATGATAACTTGGGTCAAAGTAGACGCTCCTTGTGGGGGAGGGTCCTTCTGCTTACCTTCTAGCTTCAACTAAATTTATCTCGGTTCTTGTGAAAGATATCAAAAAATGGTTAACTGATAAAACATTTTTCGATAACATGTTAAACATTTTGTCAGTTGGTTATTTTTTGATATCTTTTATAGGAAATGAGATAACATGGCTCGAAAATGGGTCTTAAGAAATACGGTTGGATGACCGAATTGATATTTTCTGAAATTTTTTTTCCTGCTTCATATTGAAGACTTCTTTTCAATGTTTATTCGCTTTTCTTGATTTAGCTTGAAAATGTTCAACGCTGAGTTTGCGACCGCGTAGCTGCACGGCGCTTTTTGAGTTCAATTTCTTAATTGAAACATGAGACTTAAAAAATTYCGGTTTCATAAATCCTAGGAGTTGGGACCATACCTTCCTCTTACATTAGGATTATTGTTGTCAAATATTCTAATAGAAGGATCTCCTTAACTCTCAGTTAAAGGCTACAGTCAACTTACTGCGTAGCTTGTACCACGGCACTCTTAGAAGTTCAAATTCAACCTCTTACAACTTGGTAGCTTATCATGAGAATAAAAAAAAATCCACGGTTTCACGGATTCTATGAGTTTGAAAAAATCTACCTCTGAGATCATGCAGCGCTTATCTTTCCAACCGTAAACACTCCAATAGAAGGATCTATCTAACTCTTAACTTTGAGTCAATTCATTTCGGCTCTTGTAAAAGATGTCAAAAAGTTGCCAACTGATAAGTTGTTTATCATAATATCAGCATTATTTTATCCGTTTATCGTTTTCAAATTTTTTTAACAGGAAATGAGATAAATTGGCTCAAAGGTGACAGTGTGCTAGTACGAGTCACAGTGTATGTAGGGTACAGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>263 182 159 153 113 83 47</canonical_bands>
                <polymorphic_bands>312 263 182 113 83 47</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAAGACTTCTTTTCAATGTTT</pcr_primer_p1>
		<pcr_primer_p2>TGACTGTAGCCTTTAACTGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGAAGACTTCTTTTCAATGTTTATTCGCTTTTCTTGATTTAGCTTGAAAATGTTCAACGCTGAGTTTGCGACCGCGTAGCTGCACGGCGCTTTTTGAGTTCAATTTCTTAATTGAAACATGAGACTTAAAAAATTTCGGTTTCATAAATCCTAGGAGTTGGGACCATACCTTCCTCTTACATTAGGATTATTGTTGTCAAATATTCTAATAGAAGGATCTCCTTAACTCTCAGTTAAAGGCTACAGTCA</canonical_amplicon>
		<polymorphic_amplicon>TTGAAGACTTCTTTTCAATGTTTATTCGCTTTTCTTGATTTAGCTTGAAAATGTTCAACGCTGAGTTTGCGACCGCGTAGCTGCACGGCGCTTTTTGAGTTCAATTTCTTAATTGAAACATGAGACTTAAAAAATTYCGGTTTCATAAATCCTAGGAGTTGGGACCATACCTTCCTCTTACATTAGGATTATTGTTGTCAAATATTCTAATAGAAGGATCTCCTTAACTCTCAGTTAAAGGCTACAGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8178</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>201216</contig_pos>
        <strand></strand>
        <context>AYTTTTTTTC[C/T]TGCTTCATAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAGAAATACGGTTGGATGACCGAATTGATATTTTCTGAAATTTTTTTTC</left_flank>
        <right_flank>TGCTTCATATTGAAGACTTCTTTTCAATGTTTATTCGCTTTTCTTGATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTGTTACAGATAATCAGTCGAGTGGATGTTCCAAACATTGGAGACGAAGTTCATCATACTGGCTGGAACGCTTGCTCATCCTGTCATGATAAACCGACTGAGAAGAGGTAGGAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCAGAAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGAATTTTGTTAGTTGATAATTTTTGATAACTAGTGCAGAAAGCATGATAACTTGGGTCAAAGTAGACGCTCCTTGTGGGGGAGGGTCCTTCTGCTTACCTTCTAGCTTCAACTAAATTTATCTCGGTTCTTGTGAAAGATATCAAAAAATGGTTAACTGATAAAACATTTTTCGATAACATGTTAAACATTTTGTCAGTTGGTTATTTTTTGATATCTTTTATAGGAAATGAGATAACATGGCTCGAAAATGGGTCTTAAGAAATACGGTTGGATGACCGAATTGATATTTTCTGAAATTTTTTTTCCTGCTTCATATTGAAGACTTCTTTTCAATGTTTATTCGCTTTTCTTGATTTAGCTTGAAAATGTTCAACGCTGAGTTTGCGACCGCGTAGCTGCACGGCGCTTTTTGAGTTCAATTTCTTAATTGAAACATGAGACTTAAAAAATTTCGGTTTCATAAATCCTAGGAGTTGGGACCATACCTTCCTCTTACATTAGGATTATTGTTGTCAAATATTCTAATAGAAGGATCTCCTTAACTCTCAGTTAAAGGCTACAGTCAACTTACTGCGTAGCTTGTACCACGGCACTCTTAGAAGTTCAAATTCAACCTCTTACAACTTGGTAGCTTATCATGAGAATAAAAAAAAATCCACGGTTTCACGGATTCTATGAGTTTGAAAAAATCTACCTCTGAGATCATGCAGCGCTTATCTTTCCAACCGTAAACACTCCAATAGAAGGATCTATCTAACTCTTAACTTTGAGTCAATTCATTTCGGCTCTTGTAAAAGATGTCAAAA</canonical>
            <polymorphic>GTTTGTTACAGATAATCAGTCGAGTGGATGTTCCAAACATTGGAGACGAAGTTCATCATACTGGCTGGAACGCTTGCTCATCCTGTCATGATAAACCGACTGAGAAGAGGTAGGAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCAGAAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGAATTTTGTTAGTTGATAATTTTTGATAACTAGTGCAGAAAGCATGATAACTTGGGTCAAAGTAGACGCTCCTTGTGGGGGAGGGTCCTTCTGCTTACCTTCTAGCTTCAACTAAATTTATCTCGGTTCTTGTGAAAGATATCAAAAAATGGTTAACTGATAAAACATTTTTCGATAACATGTTAAACATTTTGTCAGTTGGTTATTTTTTGATATCTTTTATAGGAAATGAGATAACATGGCTCGAAAATGGGTCTTAAGAAATACGGTTGGATGACCGAATTGATATTTTCTGAAATTTTTTTTCYTGCTTCATATTGAAGACTTCTTTTCAATGTTTATTCGCTTTTCTTGATTTAGCTTGAAAATGTTCAACGCTGAGTTTGCGACCGCGTAGCTGCACGGCGCTTTTTGAGTTCAATTTCTTAATTGAAACATGAGACTTAAAAAATTTCGGTTTCATAAATCCTAGGAGTTGGGACCATACCTTCCTCTTACATTAGGATTATTGTTGTCAAATATTCTAATAGAAGGATCTCCTTAACTCTCAGTTAAAGGCTACAGTCAACTTACTGCGTAGCTTGTACCACGGCACTCTTAGAAGTTCAAATTCAACCTCTTACAACTTGGTAGCTTATCATGAGAATAAAAAAAAATCCACGGTTTCACGGATTCTATGAGTTTGAAAAAATCTACCTCTGAGATCATGCAGCGCTTATCTTTCCAACCGTAAACACTCCAATAGAAGGATCTATCTAACTCTTAACTTTGAGTCAATTCATTTCGGCTCTTGTAAAAGATGTCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTAAGAAATACGGTTGGATGA</pcr_primer_p1>
		<pcr_primer_p2>TCCTAATGTAAGAGGAAGGTATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTAAGAAATACGGTTGGATGACCGAATTGATATTTTCTGAAATTTTTTTTCCTGCTTCATATTGAAGACTTCTTTTCAATGTTTATTCGCTTTTCTTGATTTAGCTTGAAAATGTTCAACGCTGAGTTTGCGACCGCGTAGCTGCACGGCGCTTTTTGAGTTCAATTTCTTAATTGAAACATGAGACTTAAAAAATTTCGGTTTCATAAATCCTAGGAGTTGGGACCATACCTTCCTCTTACATTAGGA</canonical_amplicon>
		<polymorphic_amplicon>CTTAAGAAATACGGTTGGATGACCGAATTGATATTTTCTGAAATTTTTTTTCYTGCTTCATATTGAAGACTTCTTTTCAATGTTTATTCGCTTTTCTTGATTTAGCTTGAAAATGTTCAACGCTGAGTTTGCGACCGCGTAGCTGCACGGCGCTTTTTGAGTTCAATTTCTTAATTGAAACATGAGACTTAAAAAATTTCGGTTTCATAAATCCTAGGAGTTGGGACCATACCTTCCTCTTACATTAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8179</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>260439</contig_pos>
        <strand>+</strand>
        <context>GATACATTTC[A/C]CTTYATTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTAATGAAACTTTAATATTTACCGGTTTCTCAACATTTTGATACATTTC</left_flank>
        <right_flank>CTTTATTTCTGGAATCTTATTCAGAAGAAAAGCTTACATACTTTTCTCGC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTATTTGGGAGGAAAATGTTGTTGCATTCGTGTTTTTTTTATTACCGAGATTAGCGTAGTGCAAAACTTACCCCCCAAATGCGCCATGTCCTTTAAAATTGAATAAACTTGAACAATTCAAACAATTCACTGTTACTCCAAGTTGAGATATGGACAACTATTAGGAACTGTTTAGCGAATCTTTTGATCTAAGAATGCTCATTTTTCGATTTTTACAAAGCTTCCGAAATTCATTTATTGATAACTTCACATGGTATCACAAATCTAATTCAAACTGGAAACCCCATTTTGGATGTACTATACTAAAAATTAGATTCGAAAATTCTGAAGTTTTATTGTCAGACCGGCCAAATCCAGCTTCTTCAAAATCGGTCTAGCAGTTCGGACTTCTTTTCGGAAGGAGCGTAAAGTGTACAAAACGATTTGTTGAACTACAAACTTGACATATTAATGAAACTTTAATATTTACCGGTTTCTCAACATTTTGATACATTTCCCTTTATTTCTGGAATCTTATTCAGAAGAAAAGCTTACATACTTTTCTCGCGCATAGTTTGAGAGAAAAATCATGTTTCTGGTGGTTTTTACAAAATTTTGGACATACATTCGCGTTCCATGCATTCTCGAACTATCTAGTTTTCTGGAATGATCTGTTGTTTTCTAGTTCGACATAGTAATTTTTTGTTAAATGGCAAAAAAACATCAGAAACCCAGACCCCAGGCCCCAGACCCCGGGCCCCAGGCCCAGCGTCAAGTGAATATCCAGAAGGCGAGCGGAGACCCGTGGAGCGATCGAGGTCCAGCTCCATGCGGGCCCAGCTCCATGCGGACTCAGGAGCCCCAGTACGCGGGTCCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCTCCCCTCTCTGGAGCCCAGAGAAGGTGAGAACTGATTCTTTTCTCATTTCTCTCTTCTTTTATA</canonical>
            <polymorphic>AAATTATTTGGGAGGAAAATGTTGTTGCATTCGTGTTTTTTTTATTACCGAGATTAGCGTAGTGCAAAACTTACCCCCCAAATGCGCCATGTCCTTTAAAATTGAATAAACTTGAACAATTCAAACAATTCACTGTTACTCCAAGTTGAGATATGGACAACTATTAGGAACTGTTTAGCGAATCTTTTGATCTAAGAATGCTCATTTTTCGATTTTTACAAAGCTTCCGAAATTCATTTATTGATAACTTCACATGGTATCACAAATCTAATTCAAACTGGAAACCCCATTTTGGATGTACTATACTAAAAATTAGATTCGAAAATTCTGAAGTTTTATTGTCAGACCGGCCAAATCCAGCTTCTTCAAAATCGGTCTAGCAGTTCGGACTTCTTTTCGGAAGGAGCGTAAAGTGTACAAAACGATTTGTTGAACTACAAACTTGACATATTAATGAAACTTTAATATTTACCGGTTTCTCAACATTTTGATACATTTCMCTTTATTTCTGGAATCTTATTCAGAAGAAAAGCTTACATACTTTTCTCGCGCATAGTTTGAGAGAAAAATCATGTTTCTGGTGGTTTTTACAAAATTTTGGACATACATTCGCGTTCCATGCATTCTCGAACTATCTAGTTTTCTGGAATGATCTGTTGTTTTCTAGTTCGACATAGTAATTTTTTGTTAAATGGCAAAAAAACATCAGAAACCCAGACCCCAGGCCCCAGACCCCGGGCCCCAGGCCCAGCGTCAAGTGAATATCCAGAAGGCGAGCGGAGACCCGTGGAGCGATCGAGGTCCAGCTCCATGCGGGCCCAGCTCCATGCGGACTCAGGAGCCCCAGTACGCGGGTCCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCTCCCCTCTCTGGAGCCCAGAGAAGGTGAGAACTGATTCTTTTCTCATTTCTCTCTTCTTTTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTTGAACTACAAACTTGACA</pcr_primer_p1>
		<pcr_primer_p2>CGAACTAGAAAACAACAGATCAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTGTTGAACTACAAACTTGACATATTAATGAAACTTTAATATTTACCGGTTTCTCAACATTTTGATACATTTCCCTTTATTTCTGGAATCTTATTCAGAAGAAAAGCTTACATACTTTTCTCGCGCATAGTTTGAGAGAAAAATCATGTTTCTGGTGGTTTTTACAAAATTTTGGACATACATTCGCGTTCCATGCATTCTCGAACTATCTAGTTTTCTGGAATGATCTGTTGTTTTCTAGTTCG</canonical_amplicon>
		<polymorphic_amplicon>TTTGTTGAACTACAAACTTGACATATTAATGAAACTTTAATATTTACCGGTTTCTCAACATTTTGATACATTTCMCTTTATTTCTGGAATCTTATTCAGAAGAAAAGCTTACATACTTTTCTCGCGCATAGTTTGAGAGAAAAATCATGTTTCTGGTGGTTTTTACAAAATTTTGGACATACATTCGCGTTCCATGCATTCTCGAACTATCTAGTTTTCTGGAATGATCTGTTGTTTTCTAGTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8180</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>260443</contig_pos>
        <strand>+</strand>
        <context>CATTTCMCTT[C/T]ATTTCTGGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGAAACTTTAATATTTACCGGTTTCTCAACATTTTGATACATTTCCCTT</left_flank>
        <right_flank>ATTTCTGGAATCTTATTCAGAAGAAAAGCTTACATACTTTTCTCGCGCAT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTGGGAGGAAAATGTTGTTGCATTCGTGTTTTTTTTATTACCGAGATTAGCGTAGTGCAAAACTTACCCCCCAAATGCGCCATGTCCTTTAAAATTGAATAAACTTGAACAATTCAAACAATTCACTGTTACTCCAAGTTGAGATATGGACAACTATTAGGAACTGTTTAGCGAATCTTTTGATCTAAGAATGCTCATTTTTCGATTTTTACAAAGCTTCCGAAATTCATTTATTGATAACTTCACATGGTATCACAAATCTAATTCAAACTGGAAACCCCATTTTGGATGTACTATACTAAAAATTAGATTCGAAAATTCTGAAGTTTTATTGTCAGACCGGCCAAATCCAGCTTCTTCAAAATCGGTCTAGCAGTTCGGACTTCTTTTCGGAAGGAGCGTAAAGTGTACAAAACGATTTGTTGAACTACAAACTTGACATATTAATGAAACTTTAATATTTACCGGTTTCTCAACATTTTGATACATTTCCCTTTATTTCTGGAATCTTATTCAGAAGAAAAGCTTACATACTTTTCTCGCGCATAGTTTGAGAGAAAAATCATGTTTCTGGTGGTTTTTACAAAATTTTGGACATACATTCGCGTTCCATGCATTCTCGAACTATCTAGTTTTCTGGAATGATCTGTTGTTTTCTAGTTCGACATAGTAATTTTTTGTTAAATGGCAAAAAAACATCAGAAACCCAGACCCCAGGCCCCAGACCCCGGGCCCCAGGCCCAGCGTCAAGTGAATATCCAGAAGGCGAGCGGAGACCCGTGGAGCGATCGAGGTCCAGCTCCATGCGGGCCCAGCTCCATGCGGACTCAGGAGCCCCAGTACGCGGGTCCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCTCCCCTCTCTGGAGCCCAGAGAAGGTGAGAACTGATTCTTTTCTCATTTCTCTCTTCTTTTATAGTAA</canonical>
            <polymorphic>TATTTGGGAGGAAAATGTTGTTGCATTCGTGTTTTTTTTATTACCGAGATTAGCGTAGTGCAAAACTTACCCCCCAAATGCGCCATGTCCTTTAAAATTGAATAAACTTGAACAATTCAAACAATTCACTGTTACTCCAAGTTGAGATATGGACAACTATTAGGAACTGTTTAGCGAATCTTTTGATCTAAGAATGCTCATTTTTCGATTTTTACAAAGCTTCCGAAATTCATTTATTGATAACTTCACATGGTATCACAAATCTAATTCAAACTGGAAACCCCATTTTGGATGTACTATACTAAAAATTAGATTCGAAAATTCTGAAGTTTTATTGTCAGACCGGCCAAATCCAGCTTCTTCAAAATCGGTCTAGCAGTTCGGACTTCTTTTCGGAAGGAGCGTAAAGTGTACAAAACGATTTGTTGAACTACAAACTTGACATATTAATGAAACTTTAATATTTACCGGTTTCTCAACATTTTGATACATTTCCCTTYATTTCTGGAATCTTATTCAGAAGAAAAGCTTACATACTTTTCTCGCGCATAGTTTGAGAGAAAAATCATGTTTCTGGTGGTTTTTACAAAATTTTGGACATACATTCGCGTTCCATGCATTCTCGAACTATCTAGTTTTCTGGAATGATCTGTTGTTTTCTAGTTCGACATAGTAATTTTTTGTTAAATGGCAAAAAAACATCAGAAACCCAGACCCCAGGCCCCAGACCCCGGGCCCCAGGCCCAGCGTCAAGTGAATATCCAGAAGGCGAGCGGAGACCCGTGGAGCGATCGAGGTCCAGCTCCATGCGGGCCCAGCTCCATGCGGACTCAGGAGCCCCAGTACGCGGGTCCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCTCCCCTCTCTGGAGCCCAGAGAAGGTGAGAACTGATTCTTTTCTCATTTCTCTCTTCTTTTATAGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTTGAACTACAAACTTGACA</pcr_primer_p1>
		<pcr_primer_p2>CGAACTAGAAAACAACAGATCAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTGTTGAACTACAAACTTGACATATTAATGAAACTTTAATATTTACCGGTTTCTCAACATTTTGATACATTTCCCTTTATTTCTGGAATCTTATTCAGAAGAAAAGCTTACATACTTTTCTCGCGCATAGTTTGAGAGAAAAATCATGTTTCTGGTGGTTTTTACAAAATTTTGGACATACATTCGCGTTCCATGCATTCTCGAACTATCTAGTTTTCTGGAATGATCTGTTGTTTTCTAGTTCG</canonical_amplicon>
		<polymorphic_amplicon>TTTGTTGAACTACAAACTTGACATATTAATGAAACTTTAATATTTACCGGTTTCTCAACATTTTGATACATTTCCCTTYATTTCTGGAATCTTATTCAGAAGAAAAGCTTACATACTTTTCTCGCGCATAGTTTGAGAGAAAAATCATGTTTCTGGTGGTTTTTACAAAATTTTGGACATACATTCGCGTTCCATGCATTCTCGAACTATCTAGTTTTCTGGAATGATCTGTTGTTTTCTAGTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8181</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>260540</contig_pos>
        <strand>+</strand>
        <context>CAAAATTTTG[G/T]ACATACATTS</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCATAGTTTGAGAGAAAAATCATGTTTCTGGTGGTTTTTACAAAATTTTG</left_flank>
        <right_flank>ACATACATTCGCGTTCCATGCATTCTCGAACTATCTAGTTTTCTGGAATG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAATAAACTTGAACAATTCAAACAATTCACTGTTACTCCAAGTTGAGATATGGACAACTATTAGGAACTGTTTAGCGAATCTTTTGATCTAAGAATGCTCATTTTTCGATTTTTACAAAGCTTCCGAAATTCATTTATTGATAACTTCACATGGTATCACAAATCTAATTCAAACTGGAAACCCCATTTTGGATGTACTATACTAAAAATTAGATTCGAAAATTCTGAAGTTTTATTGTCAGACCGGCCAAATCCAGCTTCTTCAAAATCGGTCTAGCAGTTCGGACTTCTTTTCGGAAGGAGCGTAAAGTGTACAAAACGATTTGTTGAACTACAAACTTGACATATTAATGAAACTTTAATATTTACCGGTTTCTCAACATTTTGATACATTTCCCTTTATTTCTGGAATCTTATTCAGAAGAAAAGCTTACATACTTTTCTCGCGCATAGTTTGAGAGAAAAATCATGTTTCTGGTGGTTTTTACAAAATTTTGGACATACATTCGCGTTCCATGCATTCTCGAACTATCTAGTTTTCTGGAATGATCTGTTGTTTTCTAGTTCGACATAGTAATTTTTTGTTAAATGGCAAAAAAACATCAGAAACCCAGACCCCAGGCCCCAGACCCCGGGCCCCAGGCCCAGCGTCAAGTGAATATCCAGAAGGCGAGCGGAGACCCGTGGAGCGATCGAGGTCCAGCTCCATGCGGGCCCAGCTCCATGCGGACTCAGGAGCCCCAGTACGCGGGTCCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCTCCCCTCTCTGGAGCCCAGAGAAGGTGAGAACTGATTCTTTTCTCATTTCTCTCTTCTTTTATAGTAATTTTCCAAAGGTCAATGGGCATTCACGTAGCTTTTTGGACTAGAATTTTAAATTTTTTTCGAACATTTTTTTTGTCACGCTGTCTTTTTATCCATAA</canonical>
            <polymorphic>TTGAATAAACTTGAACAATTCAAACAATTCACTGTTACTCCAAGTTGAGATATGGACAACTATTAGGAACTGTTTAGCGAATCTTTTGATCTAAGAATGCTCATTTTTCGATTTTTACAAAGCTTCCGAAATTCATTTATTGATAACTTCACATGGTATCACAAATCTAATTCAAACTGGAAACCCCATTTTGGATGTACTATACTAAAAATTAGATTCGAAAATTCTGAAGTTTTATTGTCAGACCGGCCAAATCCAGCTTCTTCAAAATCGGTCTAGCAGTTCGGACTTCTTTTCGGAAGGAGCGTAAAGTGTACAAAACGATTTGTTGAACTACAAACTTGACATATTAATGAAACTTTAATATTTACCGGTTTCTCAACATTTTGATACATTTCCCTTTATTTCTGGAATCTTATTCAGAAGAAAAGCTTACATACTTTTCTCGCGCATAGTTTGAGAGAAAAATCATGTTTCTGGTGGTTTTTACAAAATTTTGKACATACATTCGCGTTCCATGCATTCTCGAACTATCTAGTTTTCTGGAATGATCTGTTGTTTTCTAGTTCGACATAGTAATTTTTTGTTAAATGGCAAAAAAACATCAGAAACCCAGACCCCAGGCCCCAGACCCCGGGCCCCAGGCCCAGCGTCAAGTGAATATCCAGAAGGCGAGCGGAGACCCGTGGAGCGATCGAGGTCCAGCTCCATGCGGGCCCAGCTCCATGCGGACTCAGGAGCCCCAGTACGCGGGTCCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCTCCCCTCTCTGGAGCCCAGAGAAGGTGAGAACTGATTCTTTTCTCATTTCTCTCTTCTTTTATAGTAATTTTCCAAAGGTCAATGGGCATTCACGTAGCTTTTTGGACTAGAATTTTAAATTTTTTTCGAACATTTTTTTTGTCACGCTGTCTTTTTATCCATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTTGAACTACAAACTTGACA</pcr_primer_p1>
		<pcr_primer_p2>CGAACTAGAAAACAACAGATCAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTGTTGAACTACAAACTTGACATATTAATGAAACTTTAATATTTACCGGTTTCTCAACATTTTGATACATTTCCCTTTATTTCTGGAATCTTATTCAGAAGAAAAGCTTACATACTTTTCTCGCGCATAGTTTGAGAGAAAAATCATGTTTCTGGTGGTTTTTACAAAATTTTGGACATACATTCGCGTTCCATGCATTCTCGAACTATCTAGTTTTCTGGAATGATCTGTTGTTTTCTAGTTCG</canonical_amplicon>
		<polymorphic_amplicon>TTTGTTGAACTACAAACTTGACATATTAATGAAACTTTAATATTTACCGGTTTCTCAACATTTTGATACATTTCCCTTTATTTCTGGAATCTTATTCAGAAGAAAAGCTTACATACTTTTCTCGCGCATAGTTTGAGAGAAAAATCATGTTTCTGGTGGTTTTTACAAAATTTTGKACATACATTCGCGTTCCATGCATTCTCGAACTATCTAGTTTTCTGGAATGATCTGTTGTTTTCTAGTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8182</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>260550</contig_pos>
        <strand>+</strand>
        <context>KACATACATT[C/G]GCGTTCCATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGAGAAAAATCATGTTTCTGGTGGTTTTTACAAAATTTTGGACATACATT</left_flank>
        <right_flank>GCGTTCCATGCATTCTCGAACTATCTAGTTTTCTGGAATGATCTGTTGTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAACAATTCAAACAATTCACTGTTACTCCAAGTTGAGATATGGACAACTATTAGGAACTGTTTAGCGAATCTTTTGATCTAAGAATGCTCATTTTTCGATTTTTACAAAGCTTCCGAAATTCATTTATTGATAACTTCACATGGTATCACAAATCTAATTCAAACTGGAAACCCCATTTTGGATGTACTATACTAAAAATTAGATTCGAAAATTCTGAAGTTTTATTGTCAGACCGGCCAAATCCAGCTTCTTCAAAATCGGTCTAGCAGTTCGGACTTCTTTTCGGAAGGAGCGTAAAGTGTACAAAACGATTTGTTGAACTACAAACTTGACATATTAATGAAACTTTAATATTTACCGGTTTCTCAACATTTTGATACATTTCCCTTTATTTCTGGAATCTTATTCAGAAGAAAAGCTTACATACTTTTCTCGCGCATAGTTTGAGAGAAAAATCATGTTTCTGGTGGTTTTTACAAAATTTTGGACATACATTCGCGTTCCATGCATTCTCGAACTATCTAGTTTTCTGGAATGATCTGTTGTTTTCTAGTTCGACATAGTAATTTTTTGTTAAATGGCAAAAAAACATCAGAAACCCAGACCCCAGGCCCCAGACCCCGGGCCCCAGGCCCAGCGTCAAGTGAATATCCAGAAGGCGAGCGGAGACCCGTGGAGCGATCGAGGTCCAGCTCCATGCGGGCCCAGCTCCATGCGGACTCAGGAGCCCCAGTACGCGGGTCCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCTCCCCTCTCTGGAGCCCAGAGAAGGTGAGAACTGATTCTTTTCTCATTTCTCTCTTCTTTTATAGTAATTTTCCAAAGGTCAATGGGCATTCACGTAGCTTTTTGGACTAGAATTTTAAATTTTTTTCGAACATTTTTTTTGTCACGCTGTCTTTTTATCCATAAAAGAATATTT</canonical>
            <polymorphic>TTGAACAATTCAAACAATTCACTGTTACTCCAAGTTGAGATATGGACAACTATTAGGAACTGTTTAGCGAATCTTTTGATCTAAGAATGCTCATTTTTCGATTTTTACAAAGCTTCCGAAATTCATTTATTGATAACTTCACATGGTATCACAAATCTAATTCAAACTGGAAACCCCATTTTGGATGTACTATACTAAAAATTAGATTCGAAAATTCTGAAGTTTTATTGTCAGACCGGCCAAATCCAGCTTCTTCAAAATCGGTCTAGCAGTTCGGACTTCTTTTCGGAAGGAGCGTAAAGTGTACAAAACGATTTGTTGAACTACAAACTTGACATATTAATGAAACTTTAATATTTACCGGTTTCTCAACATTTTGATACATTTCCCTTTATTTCTGGAATCTTATTCAGAAGAAAAGCTTACATACTTTTCTCGCGCATAGTTTGAGAGAAAAATCATGTTTCTGGTGGTTTTTACAAAATTTTGGACATACATTSGCGTTCCATGCATTCTCGAACTATCTAGTTTTCTGGAATGATCTGTTGTTTTCTAGTTCGACATAGTAATTTTTTGTTAAATGGCAAAAAAACATCAGAAACCCAGACCCCAGGCCCCAGACCCCGGGCCCCAGGCCCAGCGTCAAGTGAATATCCAGAAGGCGAGCGGAGACCCGTGGAGCGATCGAGGTCCAGCTCCATGCGGGCCCAGCTCCATGCGGACTCAGGAGCCCCAGTACGCGGGTCCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCTCCCCTCTCTGGAGCCCAGAGAAGGTGAGAACTGATTCTTTTCTCATTTCTCTCTTCTTTTATAGTAATTTTCCAAAGGTCAATGGGCATTCACGTAGCTTTTTGGACTAGAATTTTAAATTTTTTTCGAACATTTTTTTTGTCACGCTGTCTTTTTATCCATAAAAGAATATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>438 260 239 63</canonical_bands>
                <polymorphic_bands>438 302 260</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGTTGAACTACAAACTTGACA</pcr_primer_p1>
		<pcr_primer_p2>CGAACTAGAAAACAACAGATCAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTGTTGAACTACAAACTTGACATATTAATGAAACTTTAATATTTACCGGTTTCTCAACATTTTGATACATTTCCCTTTATTTCTGGAATCTTATTCAGAAGAAAAGCTTACATACTTTTCTCGCGCATAGTTTGAGAGAAAAATCATGTTTCTGGTGGTTTTTACAAAATTTTGGACATACATTCGCGTTCCATGCATTCTCGAACTATCTAGTTTTCTGGAATGATCTGTTGTTTTCTAGTTCG</canonical_amplicon>
		<polymorphic_amplicon>TTTGTTGAACTACAAACTTGACATATTAATGAAACTTTAATATTTACCGGTTTCTCAACATTTTGATACATTTCCCTTTATTTCTGGAATCTTATTCAGAAGAAAAGCTTACATACTTTTCTCGCGCATAGTTTGAGAGAAAAATCATGTTTCTGGTGGTTTTTACAAAATTTTGGACATACATTSGCGTTCCATGCATTCTCGAACTATCTAGTTTTCTGGAATGATCTGTTGTTTTCTAGTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8183</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>260568</contig_pos>
        <strand>+</strand>
        <context>ATGCATTCTC[A/G]AACTATCTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGTGGTTTTTACAAAATTTTGGACATACATTCGCGTTCCATGCATTCTC</left_flank>
        <right_flank>AACTATCTAGTTTTCTGGAATGATCTGTTGTTTTCTAGTTCGACATAGTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACTGTTACTCCAAGTTGAGATATGGACAACTATTAGGAACTGTTTAGCGAATCTTTTGATCTAAGAATGCTCATTTTTCGATTTTTACAAAGCTTCCGAAATTCATTTATTGATAACTTCACATGGTATCACAAATCTAATTCAAACTGGAAACCCCATTTTGGATGTACTATACTAAAAATTAGATTCGAAAATTCTGAAGTTTTATTGTCAGACCGGCCAAATCCAGCTTCTTCAAAATCGGTCTAGCAGTTCGGACTTCTTTTCGGAAGGAGCGTAAAGTGTACAAAACGATTTGTTGAACTACAAACTTGACATATTAATGAAACTTTAATATTTACCGGTTTCTCAACATTTTGATACATTTCCCTTTATTTCTGGAATCTTATTCAGAAGAAAAGCTTACATACTTTTCTCGCGCATAGTTTGAGAGAAAAATCATGTTTCTGGTGGTTTTTACAAAATTTTGGACATACATTCGCGTTCCATGCATTCTCGAACTATCTAGTTTTCTGGAATGATCTGTTGTTTTCTAGTTCGACATAGTAATTTTTTGTTAAATGGCAAAAAAACATCAGAAACCCAGACCCCAGGCCCCAGACCCCGGGCCCCAGGCCCAGCGTCAAGTGAATATCCAGAAGGCGAGCGGAGACCCGTGGAGCGATCGAGGTCCAGCTCCATGCGGGCCCAGCTCCATGCGGACTCAGGAGCCCCAGTACGCGGGTCCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCTCCCCTCTCTGGAGCCCAGAGAAGGTGAGAACTGATTCTTTTCTCATTTCTCTCTTCTTTTATAGTAATTTTCCAAAGGTCAATGGGCATTCACGTAGCTTTTTGGACTAGAATTTTAAATTTTTTTCGAACATTTTTTTTGTCACGCTGTCTTTTTATCCATAAAAGAATATTTTCGTCACGTATAGAAAAA</canonical>
            <polymorphic>TCACTGTTACTCCAAGTTGAGATATGGACAACTATTAGGAACTGTTTAGCGAATCTTTTGATCTAAGAATGCTCATTTTTCGATTTTTACAAAGCTTCCGAAATTCATTTATTGATAACTTCACATGGTATCACAAATCTAATTCAAACTGGAAACCCCATTTTGGATGTACTATACTAAAAATTAGATTCGAAAATTCTGAAGTTTTATTGTCAGACCGGCCAAATCCAGCTTCTTCAAAATCGGTCTAGCAGTTCGGACTTCTTTTCGGAAGGAGCGTAAAGTGTACAAAACGATTTGTTGAACTACAAACTTGACATATTAATGAAACTTTAATATTTACCGGTTTCTCAACATTTTGATACATTTCCCTTTATTTCTGGAATCTTATTCAGAAGAAAAGCTTACATACTTTTCTCGCGCATAGTTTGAGAGAAAAATCATGTTTCTGGTGGTTTTTACAAAATTTTGGACATACATTCGCGTTCCATGCATTCTCRAACTATCTAGTTTTCTGGAATGATCTGTTGTTTTCTAGTTCGACATAGTAATTTTTTGTTAAATGGCAAAAAAACATCAGAAACCCAGACCCCAGGCCCCAGACCCCGGGCCCCAGGCCCAGCGTCAAGTGAATATCCAGAAGGCGAGCGGAGACCCGTGGAGCGATCGAGGTCCAGCTCCATGCGGGCCCAGCTCCATGCGGACTCAGGAGCCCCAGTACGCGGGTCCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCTCCCCTCTCTGGAGCCCAGAGAAGGTGAGAACTGATTCTTTTCTCATTTCTCTCTTCTTTTATAGTAATTTTCCAAAGGTCAATGGGCATTCACGTAGCTTTTTGGACTAGAATTTTAAATTTTTTTCGAACATTTTTTTTGTCACGCTGTCTTTTTATCCATAAAAGAATATTTTCGTCACGTATAGAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>308 267 127 110 81 65 42</canonical_bands>
                <polymorphic_bands>350 267 127 110 81 65</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>380 184 122 117 109 70 18</canonical_bands>
                <polymorphic_bands>380 184 135 122 109 70</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCAACATTTTGATACATTTC</pcr_primer_p1>
		<pcr_primer_p2>GTCTGGGTTTCTGATGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCAACATTTTGATACATTTCCCTTTATTTCTGGAATCTTATTCAGAAGAAAAGCTTACATACTTTTCTCGCGCATAGTTTGAGAGAAAAATCATGTTTCTGGTGGTTTTTACAAAATTTTGGACATACATTCGCGTTCCATGCATTCTCGAACTATCTAGTTTTCTGGAATGATCTGTTGTTTTCTAGTTCGACATAGTAATTTTTTGTTAAATGGCAAAAAAACATCAGAAACCCAGAC</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCAACATTTTGATACATTTCCCTTTATTTCTGGAATCTTATTCAGAAGAAAAGCTTACATACTTTTCTCGCGCATAGTTTGAGAGAAAAATCATGTTTCTGGTGGTTTTTACAAAATTTTGGACATACATTCGCGTTCCATGCATTCTCRAACTATCTAGTTTTCTGGAATGATCTGTTGTTTTCTAGTTCGACATAGTAATTTTTTGTTAAATGGCAAAAAAACATCAGAAACCCAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8184</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>260692</contig_pos>
        <strand>+</strand>
        <context>CAGGCCCAGC[A/G]TCAAGTGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATCAGAAACCCAGACCCCAGGCCCCAGACCCCGGGCCCCAGGCCCAGC</left_flank>
        <right_flank>TCAAGTGAATATCCAGAAGGCGAGCGGAGACCCGTGGAGCGATCGAGGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGTATCACAAATCTAATTCAAACTGGAAACCCCATTTTGGATGTACTATACTAAAAATTAGATTCGAAAATTCTGAAGTTTTATTGTCAGACCGGCCAAATCCAGCTTCTTCAAAATCGGTCTAGCAGTTCGGACTTCTTTTCGGAAGGAGCGTAAAGTGTACAAAACGATTTGTTGAACTACAAACTTGACATATTAATGAAACTTTAATATTTACCGGTTTCTCAACATTTTGATACATTTCCCTTTATTTCTGGAATCTTATTCAGAAGAAAAGCTTACATACTTTTCTCGCGCATAGTTTGAGAGAAAAATCATGTTTCTGGTGGTTTTTACAAAATTTTGGACATACATTCGCGTTCCATGCATTCTCGAACTATCTAGTTTTCTGGAATGATCTGTTGTTTTCTAGTTCGACATAGTAATTTTTTGTTAAATGGCAAAAAAACATCAGAAACCCAGACCCCAGGCCCCAGACCCCGGGCCCCAGGCCCAGCGTCAAGTGAATATCCAGAAGGCGAGCGGAGACCCGTGGAGCGATCGAGGTCCAGCTCCATGCGGGCCCAGCTCCATGCGGACTCAGGAGCCCCAGTACGCGGGTCCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCTCCCCTCTCTGGAGCCCAGAGAAGGTGAGAACTGATTCTTTTCTCATTTCTCTCTTCTTTTATAGTAATTTTCCAAAGGTCAATGGGCATTCACGTAGCTTTTTGGACTAGAATTTTAAATTTTTTTCGAACATTTTTTTTGTCACGCTGTCTTTTTATCCATAAAAGAATATTTTCGTCACGTATAGAAAAAAAATTGAATTTTCTCTTTTGAAATATGTGAAACTCTCTAAAACTGTGATCTCTTTAAACCGAATTATCTCGTTTCCTGCTAAGAGATATCAAAAAATTGTCAACTTATGAACTGTTTCTGATAT</canonical>
            <polymorphic>ATGGTATCACAAATCTAATTCAAACTGGAAACCCCATTTTGGATGTACTATACTAAAAATTAGATTCGAAAATTCTGAAGTTTTATTGTCAGACCGGCCAAATCCAGCTTCTTCAAAATCGGTCTAGCAGTTCGGACTTCTTTTCGGAAGGAGCGTAAAGTGTACAAAACGATTTGTTGAACTACAAACTTGACATATTAATGAAACTTTAATATTTACCGGTTTCTCAACATTTTGATACATTTCCCTTTATTTCTGGAATCTTATTCAGAAGAAAAGCTTACATACTTTTCTCGCGCATAGTTTGAGAGAAAAATCATGTTTCTGGTGGTTTTTACAAAATTTTGGACATACATTCGCGTTCCATGCATTCTCGAACTATCTAGTTTTCTGGAATGATCTGTTGTTTTCTAGTTCGACATAGTAATTTTTTGTTAAATGGCAAAAAAACATCAGAAACCCAGACCCCAGGCCCCAGACCCCGGGCCCCAGGCCCAGCRTCAAGTGAATATCCAGAAGGCGAGCGGAGACCCGTGGAGCGATCGAGGTCCAGCTCCATGCGGGCCCAGCTCCATGCGGACTCAGGAGCCCCAGTACGCGGGTCCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCTCCCCTCTCTGGAGCCCAGAGAAGGTGAGAACTGATTCTTTTCTCATTTCTCTCTTCTTTTATAGTAATTTTCCAAAGGTCAATGGGCATTCACGTAGCTTTTTGGACTAGAATTTTAAATTTTTTTCGAACATTTTTTTTGTCACGCTGTCTTTTTATCCATAAAAGAATATTTTCGTCACGTATAGAAAAAAAATTGAATTTTCTCTTTTGAAATATGTGAAACTCTCTAAAACTGTGATCTCTTTAAACCGAATTATCTCGTTTCCTGCTAAGAGATATCAAAAAATTGTCAACTTATGAACTGTTTCTGATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACATCAGAAACCCAGAC</pcr_primer_p1>
		<pcr_primer_p2>AAGAATCAGTTCTCACCTTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>278</pcr_amplicon_size>
		<canonical_amplicon>AAAAACATCAGAAACCCAGACCCCAGGCCCCAGACCCCGGGCCCCAGGCCCAGCGTCAAGTGAATATCCAGAAGGCGAGCGGAGACCCGTGGAGCGATCGAGGTCCAGCTCCATGCGGGCCCAGCTCCATGCGGACTCAGGAGCCCCAGTACGCGGGTCCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCTCCCCTCTCTGGAGCCCAGAGAAGGTGAGAACTGATTCTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAACATCAGAAACCCAGACCCCAGGCCCCAGACCCCGGGCCCCAGGCCCAGCRTCAAGTGAATATCCAGAAGGCGAGCGGAGACCCGTGGAGCGATCGAGGTCCAGCTCCATGCGGGCCCAGCTCCATGCGGACTCAGGAGCCCCAGTACGCGGGTCCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCCCAGGCCTCCCCTCTCTGGAGCCCAGAGAAGGTGAGAACTGATTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8185</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>273514</contig_pos>
        <strand>+</strand>
        <context>CTCACTATCA[C/G]ATTCAAATAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATTGTGTTAATCAATGATAGTGTGTTTCACAGAAAAATTCTCACTATCA</left_flank>
        <right_flank>ATTCAAATATTTAGATTTTTCAAATGAAATTAAAAGTTATTATAGATTTA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGATTTTAGGTTAGTTTTGAAGCAGTAATATTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAATTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATCACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGTGTAGATAAACTATCGAAACATGTAACGATTTGAAATTTTCGGTTTTTGAAAAATTCCCTTTGTTTTGAACTTTGAGTGAAAACCATTGTTGTAATTTTAGAGTTTTTTCTGATGGATTAAACCTATTTTCGTTTTCAAAATAATTTCGAATTTCTGTCAAAAATTGTGTTAATCAATGATAGTGTGTTTCACAGAAAAATTCTCACTATCAGATTCAAATATTTAGATTTTTCAAATGAAATTAAAAGTTATTATAGATTTATTGATGGTTTTGGTTTAGAGCAATAAATTCTGAACATTTGATATTTTAATCTGTTTCAAATCTTCTGTAACTTTTGAAAGTTTAAAACGTATTTATTCTGACTTCCATTGGTTGACGTGGTCGCTGGAGATGGGACGAGCTGTCCGAAGACTGATATCAAGGAGCATTCTTTCTGAGTCTTTCATGTCCTGCCCTCTATTGTTTCATTACCTGGTCAATAAATTAATTCAAAGGAGGCGATTTGTTGAGTGAGATCAGCCATTGCCTTTGCCTGATCGCCAGTTGTTACGTCCTTAGGATCCGGCATTCTGGCCGGCTCAGGGAATACGAATAGTAGTTATTAGAATACAGATTTATTCAGGTACTAAAGATGTACGAGAATAGAGGGGGAAAAGTAGAGAAGGCTGGGAGAGACTAGGACAGACCGAGAATGGTTGTCAGCCCCAAAGA</canonical>
            <polymorphic>CAGATTTTAGGTTAGTTTTGAAGCAGTAATATTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAATTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATCACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGTGTAGATAAACTATCGAAACATGTAACGATTTGAAATTTTCGGTTTTTGAAAAATTCCCTTTGTTTTGAACTTTGAGTGAAAACCATTGTTGTAATTTTAGAGTTTTTTCTGATGGATTAAACCTATTTTCGTTTTCAAAATAATTTCGAATTTCTGTCAAAAATTGTGTTAATCAATGATAGTGTGTTTCACAGAAAAATTCTCACTATCASATTCAAATATTTAGATTTTTCAAATGAAATTAAAAGTTATTATAGATTTATTGATGGTTTTGGTTTAGAGCAATAAATTCTGAACATTTGATATTTTAATCTGTTTCAAATCTTCTGTAACTTTTGAAAGTTTAAAACGTATTTATTCTGACTTCCATTGGTTGACGTGGTCGCTGGAGATGGGACGAGCTGTCCGAAGACTGATATCAAGGAGCATTCTTTCTGAGTCTTTCATGTCCTGCCCTCTATTGTTTCATTACCTGGTCAATAAATTAATTCAAAGGAGGCGATTTGTTGAGTGAGATCAGCCATTGCCTTTGCCTGATCGCCAGTTGTTACGTCCTTAGGATCCGGCATTCTGGCCGGCTCAGGGAATACGAATAGTAGTTATTAGAATACAGATTTATTCAGGTACTAAAGATGTACGAGAATAGAGGGGGAAAAGTAGAGAAGGCTGGGAGAGACTAGGACAGACCGAGAATGGTTGTCAGCCCCAAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>305 275 225 195</canonical_bands>
                <polymorphic_bands>530 275 195</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>276 261 137 101 82 68 46 29</canonical_bands>
                <polymorphic_bands>276 261 183 137 68 46 29</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 305 195</canonical_bands>
                <polymorphic_bands>805 195</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCTATTTTCGTTTTCAAAATAAT</pcr_primer_p1>
		<pcr_primer_p2>CAATGGAAGTCAGAATAAATACG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACCTATTTTCGTTTTCAAAATAATTTCGAATTTCTGTCAAAAATTGTGTTAATCAATGATAGTGTGTTTCACAGAAAAATTCTCACTATCAGATTCAAATATTTAGATTTTTCAAATGAAATTAAAAGTTATTATAGATTTATTGATGGTTTTGGTTTAGAGCAATAAATTCTGAACATTTGATATTTTAATCTGTTTCAAATCTTCTGTAACTTTTGAAAGTTTAAAACGTATTTATTCTGACTTCCATTG</canonical_amplicon>
		<polymorphic_amplicon>ACCTATTTTCGTTTTCAAAATAATTTCGAATTTCTGTCAAAAATTGTGTTAATCAATGATAGTGTGTTTCACAGAAAAATTCTCACTATCASATTCAAATATTTAGATTTTTCAAATGAAATTAAAAGTTATTATAGATTTATTGATGGTTTTGGTTTAGAGCAATAAATTCTGAACATTTGATATTTTAATCTGTTTCAAATCTTCTGTAACTTTTGAAAGTTTAAAACGTATTTATTCTGACTTCCATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8186</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>273337</contig_pos>
        <strand></strand>
        <context>ACGATTTGAA[A/C]TMTTCGGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTACAACTTTTGGAGTGTAGATAAACTATCGAAACATGTAACGATTTGAA</left_flank>
        <right_flank>TTTTCGGTTTTTGAAAAATTCCCTTTGTTTTGAACTTTGAGTGAAAACCA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATGGATGATGCATAATGGTAAATAGAGAGAAAAAGATGGGAGAACATGGGAAAGGAAGATACATTTATTTGAATTACAATGTGTTCTTCTTTTAAGAGGAGCTTGATGAAAGTAGCTTGTGATAAGAACCAGTTTTTTTATTTCAAAATTTTCAATTAGCCTTCCTTAACTAGCTCAGATTTTAGGTTAGTTTTGAAGCAGTAATATTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAATTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATCACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGTGTAGATAAACTATCGAAACATGTAACGATTTGAAATTTTCGGTTTTTGAAAAATTCCCTTTGTTTTGAACTTTGAGTGAAAACCATTGTTGTAATTTTAGAGTTTTTTCTGATGGATTAAACCTATTTTCGTTTTCAAAATAATTTCGAATTTCTGTCAAAAATTGTGTTAATCAATGATAGTGTGTTTCACAGAAAAATTCTCACTATCAGATTCAAATATTTAGATTTTTCAAATGAAATTAAAAGTTATTATAGATTTATTGATGGTTTTGGTTTAGAGCAATAAATTCTGAACATTTGATATTTTAATCTGTTTCAAATCTTCTGTAACTTTTGAAAGTTTAAAACGTATTTATTCTGACTTCCATTGGTTGACGTGGTCGCTGGAGATGGGACGAGCTGTCCGAAGACTGATATCAAGGAGCATTCTTTCTGAGTCTTTCATGTCCTGCCCTCTATTGTTTCATTACCTGGTCAATAAATTAATTCAAAGGAGGCGATTTGTTGAGTGAGATCAGCCATTGCCTTTGCCT</canonical>
            <polymorphic>GGATGGATGATGCATAATGGTAAATAGAGAGAAAAAGATGGGAGAACATGGGAAAGGAAGATACATTTATTTGAATTACAATGTGTTCTTCTTTTAAGAGGAGCTTGATGAAAGTAGCTTGTGATAAGAACCAGTTTTTTTATTTCAAAATTTTCAATTAGCCTTCCTTAACTAGCTCAGATTTTAGGTTAGTTTTGAAGCAGTAATATTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAATTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATCACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGTGTAGATAAACTATCGAAACATGTAACGATTTGAAMTTTTCGGTTTTTGAAAAATTCCCTTTGTTTTGAACTTTGAGTGAAAACCATTGTTGTAATTTTAGAGTTTTTTCTGATGGATTAAACCTATTTTCGTTTTCAAAATAATTTCGAATTTCTGTCAAAAATTGTGTTAATCAATGATAGTGTGTTTCACAGAAAAATTCTCACTATCAGATTCAAATATTTAGATTTTTCAAATGAAATTAAAAGTTATTATAGATTTATTGATGGTTTTGGTTTAGAGCAATAAATTCTGAACATTTGATATTTTAATCTGTTTCAAATCTTCTGTAACTTTTGAAAGTTTAAAACGTATTTATTCTGACTTCCATTGGTTGACGTGGTCGCTGGAGATGGGACGAGCTGTCCGAAGACTGATATCAAGGAGCATTCTTTCTGAGTCTTTCATGTCCTGCCCTCTATTGTTTCATTACCTGGTCAATAAATTAATTCAAAGGAGGCGATTTGTTGAGTGAGATCAGCCATTGCCTTTGCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>350 248 148 97 90 49 18</canonical_bands>
                <polymorphic_bands>368 248 148 97 90 49</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>220 195 91 75 73 49 49 48 42 41 36 32 18 13 7 7 4</canonical_bands>
                <polymorphic_bands>238 195 91 75 73 49 49 48 42 41 36 32 13 7 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTATAAGTTACAACTTTTGGAGTG</pcr_primer_p1>
		<pcr_primer_p2>GTGAGAATTTTTCTGTGAAACAC</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>TTTTATAAGTTACAACTTTTGGAGTGTAGATAAACTATCGAAACATGTAACGATTTGAAATTTTCGGTTTTTGAAAAATTCCCTTTGTTTTGAACTTTGAGTGAAAACCATTGTTGTAATTTTAGAGTTTTTTCTGATGGATTAAACCTATTTTCGTTTTCAAAATAATTTCGAATTTCTGTCAAAAATTGTGTTAATCAATGATAGTGTGTTTCACAGAAAAATTCTCAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTATAAGTTACAACTTTTGGAGTGTAGATAAACTATCGAAACATGTAACGATTTGAAMTTTTCGGTTTTTGAAAAATTCCCTTTGTTTTGAACTTTGAGTGAAAACCATTGTTGTAATTTTAGAGTTTTTTCTGATGGATTAAACCTATTTTCGTTTTCAAAATAATTTCGAATTTCTGTCAAAAATTGTGTTAATCAATGATAGTGTGTTTCACAGAAAAATTCTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8187</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>273307</contig_pos>
        <strand>+</strand>
        <context>TGGAGTGTRK[A/T]TAAACTATCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGTGTAG</left_flank>
        <right_flank>TAAACTATCGAAACATGTAACGATTTGAAATTTTCGGTTTTTGAAAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCATGCGAACGGGATGGGAAAGAAAAATTGGATGGATGATGCATAATGGTAAATAGAGAGAAAAAGATGGGAGAACATGGGAAAGGAAGATACATTTATTTGAATTACAATGTGTTCTTCTTTTAAGAGGAGCTTGATGAAAGTAGCTTGTGATAAGAACCAGTTTTTTTATTTCAAAATTTTCAATTAGCCTTCCTTAACTAGCTCAGATTTTAGGTTAGTTTTGAAGCAGTAATATTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAATTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATCACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGTGTAGATAAACTATCGAAACATGTAACGATTTGAAATTTTCGGTTTTTGAAAAATTCCCTTTGTTTTGAACTTTGAGTGAAAACCATTGTTGTAATTTTAGAGTTTTTTCTGATGGATTAAACCTATTTTCGTTTTCAAAATAATTTCGAATTTCTGTCAAAAATTGTGTTAATCAATGATAGTGTGTTTCACAGAAAAATTCTCACTATCAGATTCAAATATTTAGATTTTTCAAATGAAATTAAAAGTTATTATAGATTTATTGATGGTTTTGGTTTAGAGCAATAAATTCTGAACATTTGATATTTTAATCTGTTTCAAATCTTCTGTAACTTTTGAAAGTTTAAAACGTATTTATTCTGACTTCCATTGGTTGACGTGGTCGCTGGAGATGGGACGAGCTGTCCGAAGACTGATATCAAGGAGCATTCTTTCTGAGTCTTTCATGTCCTGCCCTCTATTGTTTCATTACCTGGTCAATAAATTAATTCAAAGGAGGCGATTT</canonical>
            <polymorphic>GGCATGCGAACGGGATGGGAAAGAAAAATTGGATGGATGATGCATAATGGTAAATAGAGAGAAAAAGATGGGAGAACATGGGAAAGGAAGATACATTTATTTGAATTACAATGTGTTCTTCTTTTAAGAGGAGCTTGATGAAAGTAGCTTGTGATAAGAACCAGTTTTTTTATTTCAAAATTTTCAATTAGCCTTCCTTAACTAGCTCAGATTTTAGGTTAGTTTTGAAGCAGTAATATTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAATTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATCACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGTGTAGWTAAACTATCGAAACATGTAACGATTTGAAATTTTCGGTTTTTGAAAAATTCCCTTTGTTTTGAACTTTGAGTGAAAACCATTGTTGTAATTTTAGAGTTTTTTCTGATGGATTAAACCTATTTTCGTTTTCAAAATAATTTCGAATTTCTGTCAAAAATTGTGTTAATCAATGATAGTGTGTTTCACAGAAAAATTCTCACTATCAGATTCAAATATTTAGATTTTTCAAATGAAATTAAAAGTTATTATAGATTTATTGATGGTTTTGGTTTAGAGCAATAAATTCTGAACATTTGATATTTTAATCTGTTTCAAATCTTCTGTAACTTTTGAAAGTTTAAAACGTATTTATTCTGACTTCCATTGGTTGACGTGGTCGCTGGAGATGGGACGAGCTGTCCGAAGACTGATATCAAGGAGCATTCTTTCTGAGTCTTTCATGTCCTGCCCTCTATTGTTTCATTACCTGGTCAATAAATTAATTCAAAGGAGGCGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGCTTCCCTAATAAAGTAGTTACC</pcr_primer_p1>
		<pcr_primer_p2>AAAACAAAGGGAATTTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>TTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAATTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATCACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGTGTAGATAAACTATCGAAACATGTAACGATTTGAAATTTTCGGTTTTTGAAAAATTCCCTTTGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAATTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATCACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGTGTAGWTAAACTATCGAAACATGTAACGATTTGAAATTTTCGGTTTTTGAAAAATTCCCTTTGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8188</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>273306</contig_pos>
        <strand>+</strand>
        <context>TTGGAGTGTR[G/T]WTAAACTATC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGTGTA</left_flank>
        <right_flank>ATAAACTATCGAAACATGTAACGATTTGAAATTTTCGGTTTTTGAAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGCATGCGAACGGGATGGGAAAGAAAAATTGGATGGATGATGCATAATGGTAAATAGAGAGAAAAAGATGGGAGAACATGGGAAAGGAAGATACATTTATTTGAATTACAATGTGTTCTTCTTTTAAGAGGAGCTTGATGAAAGTAGCTTGTGATAAGAACCAGTTTTTTTATTTCAAAATTTTCAATTAGCCTTCCTTAACTAGCTCAGATTTTAGGTTAGTTTTGAAGCAGTAATATTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAATTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATCACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGTGTAGATAAACTATCGAAACATGTAACGATTTGAAATTTTCGGTTTTTGAAAAATTCCCTTTGTTTTGAACTTTGAGTGAAAACCATTGTTGTAATTTTAGAGTTTTTTCTGATGGATTAAACCTATTTTCGTTTTCAAAATAATTTCGAATTTCTGTCAAAAATTGTGTTAATCAATGATAGTGTGTTTCACAGAAAAATTCTCACTATCAGATTCAAATATTTAGATTTTTCAAATGAAATTAAAAGTTATTATAGATTTATTGATGGTTTTGGTTTAGAGCAATAAATTCTGAACATTTGATATTTTAATCTGTTTCAAATCTTCTGTAACTTTTGAAAGTTTAAAACGTATTTATTCTGACTTCCATTGGTTGACGTGGTCGCTGGAGATGGGACGAGCTGTCCGAAGACTGATATCAAGGAGCATTCTTTCTGAGTCTTTCATGTCCTGCCCTCTATTGTTTCATTACCTGGTCAATAAATTAATTCAAAGGAGGCGATT</canonical>
            <polymorphic>GGGCATGCGAACGGGATGGGAAAGAAAAATTGGATGGATGATGCATAATGGTAAATAGAGAGAAAAAGATGGGAGAACATGGGAAAGGAAGATACATTTATTTGAATTACAATGTGTTCTTCTTTTAAGAGGAGCTTGATGAAAGTAGCTTGTGATAAGAACCAGTTTTTTTATTTCAAAATTTTCAATTAGCCTTCCTTAACTAGCTCAGATTTTAGGTTAGTTTTGAAGCAGTAATATTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAATTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATCACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGTGTAKATAAACTATCGAAACATGTAACGATTTGAAATTTTCGGTTTTTGAAAAATTCCCTTTGTTTTGAACTTTGAGTGAAAACCATTGTTGTAATTTTAGAGTTTTTTCTGATGGATTAAACCTATTTTCGTTTTCAAAATAATTTCGAATTTCTGTCAAAAATTGTGTTAATCAATGATAGTGTGTTTCACAGAAAAATTCTCACTATCAGATTCAAATATTTAGATTTTTCAAATGAAATTAAAAGTTATTATAGATTTATTGATGGTTTTGGTTTAGAGCAATAAATTCTGAACATTTGATATTTTAATCTGTTTCAAATCTTCTGTAACTTTTGAAAGTTTAAAACGTATTTATTCTGACTTCCATTGGTTGACGTGGTCGCTGGAGATGGGACGAGCTGTCCGAAGACTGATATCAAGGAGCATTCTTTCTGAGTCTTTCATGTCCTGCCCTCTATTGTTTCATTACCTGGTCAATAAATTAATTCAAAGGAGGCGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGCTTCCCTAATAAAGTAGTTACC</pcr_primer_p1>
		<pcr_primer_p2>AAAACAAAGGGAATTTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>TTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAATTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATCACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGTGTAGATAAACTATCGAAACATGTAACGATTTGAAATTTTCGGTTTTTGAAAAATTCCCTTTGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAATTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATCACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGTGTAKATAAACTATCGAAACATGTAACGATTTGAAATTTTCGGTTTTTGAAAAATTCCCTTTGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8189</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>273305</contig_pos>
        <strand>+</strand>
        <context>TTTGGAGTGT[A/G]KWTAAACTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGTGT</left_flank>
        <right_flank>GATAAACTATCGAAACATGTAACGATTTGAAATTTTCGGTTTTTGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGGCATGCGAACGGGATGGGAAAGAAAAATTGGATGGATGATGCATAATGGTAAATAGAGAGAAAAAGATGGGAGAACATGGGAAAGGAAGATACATTTATTTGAATTACAATGTGTTCTTCTTTTAAGAGGAGCTTGATGAAAGTAGCTTGTGATAAGAACCAGTTTTTTTATTTCAAAATTTTCAATTAGCCTTCCTTAACTAGCTCAGATTTTAGGTTAGTTTTGAAGCAGTAATATTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAATTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATCACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGTGTAGATAAACTATCGAAACATGTAACGATTTGAAATTTTCGGTTTTTGAAAAATTCCCTTTGTTTTGAACTTTGAGTGAAAACCATTGTTGTAATTTTAGAGTTTTTTCTGATGGATTAAACCTATTTTCGTTTTCAAAATAATTTCGAATTTCTGTCAAAAATTGTGTTAATCAATGATAGTGTGTTTCACAGAAAAATTCTCACTATCAGATTCAAATATTTAGATTTTTCAAATGAAATTAAAAGTTATTATAGATTTATTGATGGTTTTGGTTTAGAGCAATAAATTCTGAACATTTGATATTTTAATCTGTTTCAAATCTTCTGTAACTTTTGAAAGTTTAAAACGTATTTATTCTGACTTCCATTGGTTGACGTGGTCGCTGGAGATGGGACGAGCTGTCCGAAGACTGATATCAAGGAGCATTCTTTCTGAGTCTTTCATGTCCTGCCCTCTATTGTTTCATTACCTGGTCAATAAATTAATTCAAAGGAGGCGAT</canonical>
            <polymorphic>AGGGCATGCGAACGGGATGGGAAAGAAAAATTGGATGGATGATGCATAATGGTAAATAGAGAGAAAAAGATGGGAGAACATGGGAAAGGAAGATACATTTATTTGAATTACAATGTGTTCTTCTTTTAAGAGGAGCTTGATGAAAGTAGCTTGTGATAAGAACCAGTTTTTTTATTTCAAAATTTTCAATTAGCCTTCCTTAACTAGCTCAGATTTTAGGTTAGTTTTGAAGCAGTAATATTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAATTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATCACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGTGTRGATAAACTATCGAAACATGTAACGATTTGAAATTTTCGGTTTTTGAAAAATTCCCTTTGTTTTGAACTTTGAGTGAAAACCATTGTTGTAATTTTAGAGTTTTTTCTGATGGATTAAACCTATTTTCGTTTTCAAAATAATTTCGAATTTCTGTCAAAAATTGTGTTAATCAATGATAGTGTGTTTCACAGAAAAATTCTCACTATCAGATTCAAATATTTAGATTTTTCAAATGAAATTAAAAGTTATTATAGATTTATTGATGGTTTTGGTTTAGAGCAATAAATTCTGAACATTTGATATTTTAATCTGTTTCAAATCTTCTGTAACTTTTGAAAGTTTAAAACGTATTTATTCTGACTTCCATTGGTTGACGTGGTCGCTGGAGATGGGACGAGCTGTCCGAAGACTGATATCAAGGAGCATTCTTTCTGAGTCTTTCATGTCCTGCCCTCTATTGTTTCATTACCTGGTCAATAAATTAATTCAAAGGAGGCGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGCTTCCCTAATAAAGTAGTTACC</pcr_primer_p1>
		<pcr_primer_p2>AAAACAAAGGGAATTTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>TTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAATTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATCACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGTGTAGATAAACTATCGAAACATGTAACGATTTGAAATTTTCGGTTTTTGAAAAATTCCCTTTGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAATTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATCACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGTGTRGATAAACTATCGAAACATGTAACGATTTGAAATTTTCGGTTTTTGAAAAATTCCCTTTGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8190</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>273259</contig_pos>
        <strand>+</strand>
        <context>AGTTTCAAAA[A/C]GCTTGTAGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAA</left_flank>
        <right_flank>GCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGTGTAGATA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCTGCGTTCTATTGTTATGTCTGTGTGTATGATAAAAGTGGAGAAGGGCATGCGAACGGGATGGGAAAGAAAAATTGGATGGATGATGCATAATGGTAAATAGAGAGAAAAAGATGGGAGAACATGGGAAAGGAAGATACATTTATTTGAATTACAATGTGTTCTTCTTTTAAGAGGAGCTTGATGAAAGTAGCTTGTGATAAGAACCAGTTTTTTTATTTCAAAATTTTCAATTAGCCTTCCTTAACTAGCTCAGATTTTAGGTTAGTTTTGAAGCAGTAATATTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAATTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATCACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGTGTAGATAAACTATCGAAACATGTAACGATTTGAAATTTTCGGTTTTTGAAAAATTCCCTTTGTTTTGAACTTTGAGTGAAAACCATTGTTGTAATTTTAGAGTTTTTTCTGATGGATTAAACCTATTTTCGTTTTCAAAATAATTTCGAATTTCTGTCAAAAATTGTGTTAATCAATGATAGTGTGTTTCACAGAAAAATTCTCACTATCAGATTCAAATATTTAGATTTTTCAAATGAAATTAAAAGTTATTATAGATTTATTGATGGTTTTGGTTTAGAGCAATAAATTCTGAACATTTGATATTTTAATCTGTTTCAAATCTTCTGTAACTTTTGAAAGTTTAAAACGTATTTATTCTGACTTCCATTGGTTGACGTGGTCGCTGGAGATGGGACGAGCTGTCCGAAGACTGATATCAAGGAGCATTCTTTCTGAGTCTTTCATGTCCTGCCCT</canonical>
            <polymorphic>CTCCTGCGTTCTATTGTTATGTCTGTGTGTATGATAAAAGTGGAGAAGGGCATGCGAACGGGATGGGAAAGAAAAATTGGATGGATGATGCATAATGGTAAATAGAGAGAAAAAGATGGGAGAACATGGGAAAGGAAGATACATTTATTTGAATTACAATGTGTTCTTCTTTTAAGAGGAGCTTGATGAAAGTAGCTTGTGATAAGAACCAGTTTTTTTATTTCAAAATTTTCAATTAGCCTTCCTTAACTAGCTCAGATTTTAGGTTAGTTTTGAAGCAGTAATATTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAATTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATCACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAAMGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGTGTAGATAAACTATCGAAACATGTAACGATTTGAAATTTTCGGTTTTTGAAAAATTCCCTTTGTTTTGAACTTTGAGTGAAAACCATTGTTGTAATTTTAGAGTTTTTTCTGATGGATTAAACCTATTTTCGTTTTCAAAATAATTTCGAATTTCTGTCAAAAATTGTGTTAATCAATGATAGTGTGTTTCACAGAAAAATTCTCACTATCAGATTCAAATATTTAGATTTTTCAAATGAAATTAAAAGTTATTATAGATTTATTGATGGTTTTGGTTTAGAGCAATAAATTCTGAACATTTGATATTTTAATCTGTTTCAAATCTTCTGTAACTTTTGAAAGTTTAAAACGTATTTATTCTGACTTCCATTGGTTGACGTGGTCGCTGGAGATGGGACGAGCTGTCCGAAGACTGATATCAAGGAGCATTCTTTCTGAGTCTTTCATGTCCTGCCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>443 211 181 58 56 37 14</canonical_bands>
                <polymorphic_bands>654 181 58 56 37 14</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>443 181 180 56 44 37 31 14 14</canonical_bands>
                <polymorphic_bands>623 181 56 44 37 31 14 14</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGCTTCCCTAATAAAGTAGTTACC</pcr_primer_p1>
		<pcr_primer_p2>TCGTTACATGTTTCGATAGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>TTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAATTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATCACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGTGTAGATAAACTATCGAAACATGTAACGA</canonical_amplicon>
		<polymorphic_amplicon>TTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAATTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATCACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAAMGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGTGTAGATAAACTATCGAAACATGTAACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8191</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>273240</contig_pos>
        <strand>+</strand>
        <context>AACATGATTA[C/T]TTTTTTAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTA</left_flank>
        <right_flank>TTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTAC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACAATATGATGATAAGACTCCTGCGTTCTATTGTTATGTCTGTGTGTATGATAAAAGTGGAGAAGGGCATGCGAACGGGATGGGAAAGAAAAATTGGATGGATGATGCATAATGGTAAATAGAGAGAAAAAGATGGGAGAACATGGGAAAGGAAGATACATTTATTTGAATTACAATGTGTTCTTCTTTTAAGAGGAGCTTGATGAAAGTAGCTTGTGATAAGAACCAGTTTTTTTATTTCAAAATTTTCAATTAGCCTTCCTTAACTAGCTCAGATTTTAGGTTAGTTTTGAAGCAGTAATATTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAATTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATCACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGTGTAGATAAACTATCGAAACATGTAACGATTTGAAATTTTCGGTTTTTGAAAAATTCCCTTTGTTTTGAACTTTGAGTGAAAACCATTGTTGTAATTTTAGAGTTTTTTCTGATGGATTAAACCTATTTTCGTTTTCAAAATAATTTCGAATTTCTGTCAAAAATTGTGTTAATCAATGATAGTGTGTTTCACAGAAAAATTCTCACTATCAGATTCAAATATTTAGATTTTTCAAATGAAATTAAAAGTTATTATAGATTTATTGATGGTTTTGGTTTAGAGCAATAAATTCTGAACATTTGATATTTTAATCTGTTTCAAATCTTCTGTAACTTTTGAAAGTTTAAAACGTATTTATTCTGACTTCCATTGGTTGACGTGGTCGCTGGAGATGGGACGAGCTGTCCGAAGACTGATATCAAGGAGCATTCTTTCTGA</canonical>
            <polymorphic>AAACAATATGATGATAAGACTCCTGCGTTCTATTGTTATGTCTGTGTGTATGATAAAAGTGGAGAAGGGCATGCGAACGGGATGGGAAAGAAAAATTGGATGGATGATGCATAATGGTAAATAGAGAGAAAAAGATGGGAGAACATGGGAAAGGAAGATACATTTATTTGAATTACAATGTGTTCTTCTTTTAAGAGGAGCTTGATGAAAGTAGCTTGTGATAAGAACCAGTTTTTTTATTTCAAAATTTTCAATTAGCCTTCCTTAACTAGCTCAGATTTTAGGTTAGTTTTGAAGCAGTAATATTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAATTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATCACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTAYTTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGTGTAGATAAACTATCGAAACATGTAACGATTTGAAATTTTCGGTTTTTGAAAAATTCCCTTTGTTTTGAACTTTGAGTGAAAACCATTGTTGTAATTTTAGAGTTTTTTCTGATGGATTAAACCTATTTTCGTTTTCAAAATAATTTCGAATTTCTGTCAAAAATTGTGTTAATCAATGATAGTGTGTTTCACAGAAAAATTCTCACTATCAGATTCAAATATTTAGATTTTTCAAATGAAATTAAAAGTTATTATAGATTTATTGATGGTTTTGGTTTAGAGCAATAAATTCTGAACATTTGATATTTTAATCTGTTTCAAATCTTCTGTAACTTTTGAAAGTTTAAAACGTATTTATTCTGACTTCCATTGGTTGACGTGGTCGCTGGAGATGGGACGAGCTGTCCGAAGACTGATATCAAGGAGCATTCTTTCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGCTTCCCTAATAAAGTAGTTACC</pcr_primer_p1>
		<pcr_primer_p2>ACTCCAAAAGTTGTAACTTATAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAATTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATCACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGT</canonical_amplicon>
		<polymorphic_amplicon>TTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAATTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATCACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTAYTTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8192</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>273189</contig_pos>
        <strand></strand>
        <context>tgatatttat[C/A]acacataatg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTAT</left_flank>
        <right_flank>ACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACGCTAATGTATGCAATACATTACGTCTATGTGTGTGTGTAAGCTGCTCCAAACAATATGATGATAAGACTCCTGCGTTCTATTGTTATGTCTGTGTGTATGATAAAAGTGGAGAAGGGCATGCGAACGGGATGGGAAAGAAAAATTGGATGGATGATGCATAATGGTAAATAGAGAGAAAAAGATGGGAGAACATGGGAAAGGAAGATACATTTATTTGAATTACAATGTGTTCTTCTTTTAAGAGGAGCTTGATGAAAGTAGCTTGTGATAAGAACCAGTTTTTTTATTTCAAAATTTTCAATTAGCCTTCCTTAACTAGCTCAGATTTTAGGTTAGTTTTGAAGCAGTAATATTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAATTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATCACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGTGTAGATAAACTATCGAAACATGTAACGATTTGAAATTTTCGGTTTTTGAAAAATTCCCTTTGTTTTGAACTTTGAGTGAAAACCATTGTTGTAATTTTAGAGTTTTTTCTGATGGATTAAACCTATTTTCGTTTTCAAAATAATTTCGAATTTCTGTCAAAAATTGTGTTAATCAATGATAGTGTGTTTCACAGAAAAATTCTCACTATCAGATTCAAATATTTAGATTTTTCAAATGAAATTAAAAGTTATTATAGATTTATTGATGGTTTTGGTTTAGAGCAATAAATTCTGAACATTTGATATTTTAATCTGTTTCAAATCTTCTGTAACTTTTGAAAGTTTAAAACGTATTTATTCTGACTTCCATTGGTTGACGTGGTCGCT</canonical>
            <polymorphic>TACGCTAATGTATGCAATACATTACGTCTATGTGTGTGTGTAAGCTGCTCCAAACAATATGATGATAAGACTCCTGCGTTCTATTGTTATGTCTGTGTGTATGATAAAAGTGGAGAAGGGCATGCGAACGGGATGGGAAAGAAAAATTGGATGGATGATGCATAATGGTAAATAGAGAGAAAAAGATGGGAGAACATGGGAAAGGAAGATACATTTATTTGAATTACAATGTGTTCTTCTTTTAAGAGGAGCTTGATGAAAGTAGCTTGTGATAAGAACCAGTTTTTTTATTTCAAAATTTTCAATTAGCCTTCCTTAACTAGCTCAGATTTTAGGTTAGTTTTGAAGCAGTAATATTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAATTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATMACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGTGTAGATAAACTATCGAAACATGTAACGATTTGAAATTTTCGGTTTTTGAAAAATTCCCTTTGTTTTGAACTTTGAGTGAAAACCATTGTTGTAATTTTAGAGTTTTTTCTGATGGATTAAACCTATTTTCGTTTTCAAAATAATTTCGAATTTCTGTCAAAAATTGTGTTAATCAATGATAGTGTGTTTCACAGAAAAATTCTCACTATCAGATTCAAATATTTAGATTTTTCAAATGAAATTAAAAGTTATTATAGATTTATTGATGGTTTTGGTTTAGAGCAATAAATTCTGAACATTTGATATTTTAATCTGTTTCAAATCTTCTGTAACTTTTGAAAGTTTAAAACGTATTTATTCTGACTTCCATTGGTTGACGTGGTCGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATNNNNATC</site>
                <isoschizomers>
                    <enzyme>BsaBI</enzyme>
                    <enzyme>Bse8I</enzyme>
                    <enzyme>BseJI</enzyme>
                    <enzyme>BsiBI</enzyme>
                    <enzyme>BsrBRI</enzyme>
                    <enzyme>MamI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>195 176 121 111 90 77 57 38 34 17 16 14 14 13 6 5 4 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>195 176 121 111 90 77 57 38 34 19 16 14 14 13 6 5 4 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGCTTCCCTAATAAAGTAGTTACC</pcr_primer_p1>
		<pcr_primer_p2>ACTCCAAAAGTTGTAACTTATAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAATTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATCACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGT</canonical_amplicon>
		<polymorphic_amplicon>TTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAATTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATMACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8193</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>273118</contig_pos>
        <strand></strand>
        <context>atatcaaaaa[T/G]tgatcaacta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAA</left_flank>
        <right_flank>TGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATTCTCATTCACTATGCAGTTCATTCTATTATCTTTCTCCCACTTTTTTGCATAATCCCTTCATTCCCTTACGCTAATGTATGCAATACATTACGTCTATGTGTGTGTGTAAGCTGCTCCAAACAATATGATGATAAGACTCCTGCGTTCTATTGTTATGTCTGTGTGTATGATAAAAGTGGAGAAGGGCATGCGAACGGGATGGGAAAGAAAAATTGGATGGATGATGCATAATGGTAAATAGAGAGAAAAAGATGGGAGAACATGGGAAAGGAAGATACATTTATTTGAATTACAATGTGTTCTTCTTTTAAGAGGAGCTTGATGAAAGTAGCTTGTGATAAGAACCAGTTTTTTTATTTCAAAATTTTCAATTAGCCTTCCTTAACTAGCTCAGATTTTAGGTTAGTTTTGAAGCAGTAATATTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAATTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATCACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGTGTAGATAAACTATCGAAACATGTAACGATTTGAAATTTTCGGTTTTTGAAAAATTCCCTTTGTTTTGAACTTTGAGTGAAAACCATTGTTGTAATTTTAGAGTTTTTTCTGATGGATTAAACCTATTTTCGTTTTCAAAATAATTTCGAATTTCTGTCAAAAATTGTGTTAATCAATGATAGTGTGTTTCACAGAAAAATTCTCACTATCAGATTCAAATATTTAGATTTTTCAAATGAAATTAAAAGTTATTATAGATTTATTGATGGTTTTGGTTTAGAGCAATAAATTCTGAACATTTGATATTTTAATCTGT</canonical>
            <polymorphic>ATATTCTCATTCACTATGCAGTTCATTCTATTATCTTTCTCCCACTTTTTTGCATAATCCCTTCATTCCCTTACGCTAATGTATGCAATACATTACGTCTATGTGTGTGTGTAAGCTGCTCCAAACAATATGATGATAAGACTCCTGCGTTCTATTGTTATGTCTGTGTGTATGATAAAAGTGGAGAAGGGCATGCGAACGGGATGGGAAAGAAAAATTGGATGGATGATGCATAATGGTAAATAGAGAGAAAAAGATGGGAGAACATGGGAAAGGAAGATACATTTATTTGAATTACAATGTGTTCTTCTTTTAAGAGGAGCTTGATGAAAGTAGCTTGTGATAAGAACCAGTTTTTTTATTTCAAAATTTTCAATTAGCCTTCCTTAACTAGCTCAGATTTTAGGTTAGTTTTGAAGCAGTAATATTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAAKTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATCACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGTGTAGATAAACTATCGAAACATGTAACGATTTGAAATTTTCGGTTTTTGAAAAATTCCCTTTGTTTTGAACTTTGAGTGAAAACCATTGTTGTAATTTTAGAGTTTTTTCTGATGGATTAAACCTATTTTCGTTTTCAAAATAATTTCGAATTTCTGTCAAAAATTGTGTTAATCAATGATAGTGTGTTTCACAGAAAAATTCTCACTATCAGATTCAAATATTTAGATTTTTCAAATGAAATTAAAAGTTATTATAGATTTATTGATGGTTTTGGTTTAGAGCAATAAATTCTGAACATTTGATATTTTAATCTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>220 215 91 77 75 49 48 42 41 36 32 29 18 13 7 7</canonical_bands>
                <polymorphic_bands>252 215 91 77 75 49 48 42 41 36 29 18 13 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGCTTCCCTAATAAAGTAGTTACC</pcr_primer_p1>
		<pcr_primer_p2>ACTCCAAAAGTTGTAACTTATAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAATTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATCACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGT</canonical_amplicon>
		<polymorphic_amplicon>TTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAAKTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATCACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8194</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>60300</contig_pos>
        <strand>+</strand>
        <context>TCCACTAAAA[C/T]CGTCAGGTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATACGCTTCTATTCAATTAAAAATCGCACAATAATGCATCCACTAAAA</left_flank>
        <right_flank>CGTCAGGTGGTGAATAAACCCTTCTCACCTGCTCGTCTCTTCTTGCTCTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATTTTATGACATACAATTAATCAGTTAACAACGTATTTATATCTTTGACGAGAACCGAGATAAATTAGGCTATAGTTGGAAGTTTAGAGACACTTCTATTACAGGTTTTAGGGTATCTAACAAAATTAATCGAATTACAGAATTTTGAAACTTTTGAGTTATGGAGCTTCTGAGATTTATAAATACAGAATTTTTTCAAACTTTCGATTATCAAAAATTTGGCAACTGAACGGTTTAGAACTAACTACGTAGCAGTAGTTAGTTTTAGAACTGGCCATTTCAGAACTGACAACTACATCCGGTGAATTGGAATTGACTCTGTTGCAAATGCTCTTTCAGAACTGAGAATTTTCTCAGGTTGAACTTAAAAACTTGTCACGTTACAACAAAAAATTGGAACACCCTCTTCAAAACCACTCGGTTGAGAAATAGTTAGTGGCAATATTGCAATACGCTTCTATTCAATTAAAAATCGCACAATAATGCATCCACTAAAACCGTCAGGTGGTGAATAAACCCTTCTCACCTGCTCGTCTCTTCTTGCTCTTCTGAACCGATGGATCCATTCCATATTCTGCGGAAGGCCCAGTGCTCGTGGTGGTGGCGACATCTCCTGAAAAAGTTACAGATGAAAATTGTCTTAATTTTTCACAAGCTAAACTCGCCCTAGCTCTCAAGCGAGCCTGAGCGTGTGGCCGTGGTGGTACCGGGGGCGGCGTGAGTGGCCGTTGTCCTGGCCGTGGAGGGAGTGGTGGCGGGGTAGGTGCCCGTGGCTCTGGCTCCGGCTGCGGTTCCGGCTCTGGCGCGGCCGGTGGCGGGACGTCTGAAACTCCCAGACCGGCATCAACCTTTGGCTCCTCTCTCAACGGTTCTGGGATCATCTAAAATAATGAAATAAATTGAGGATTGGAAATAAACTGAAAATAAAGTTTCTGGGCTCTATGAGGTTTTCCAAAAACGGATTGAAAAGAAATAATTGAGAATTTTCGTTTGAAGCA</canonical>
            <polymorphic>TGATTTTATGACATACAATTAATCAGTTAACAACGTATTTATATCTTTGACGAGAACCGAGATAAATTAGGCTATAGTTGGAAGTTTAGAGACACTTCTATTACAGGTTTTAGGGTATCTAACAAAATTAATCGAATTACAGAATTTTGAAACTTTTGAGTTATGGAGCTTCTGAGATTTATAAATACAGAATTTTTTCAAACTTTCGATTATCAAAAATTTGGCAACTGAACGGTTTAGAACTAACTACGTAGCAGTAGTTAGTTTTAGAACTGGCCATTTCAGAACTGACAACTACATCCGGTGAATTGGAATTGACTCTGTTGCAAATGCTCTTTCAGAACTGAGAATTTTCTCAGGTTGAACTTAAAAACTTGTCACGTTACAACAAAAAATTGGAACACCCTCTTCAAAACCACTCGGTTGAGAAATAGTTAGTGGCAATATTGCAATACGCTTCTATTCAATTAAAAATCGCACAATAATGCATCCACTAAAAYCGTCAGGTGGTGAATAAACCCTTCTCACCTGCTCGTCTCTTCTTGCTCTTCTGAACCGATGGATCCATTCCATATTCTGCGGAAGGCCCAGTGCTCGTGGTGGTGGCGACATCTCCTGAAAAAGTTACAGATGAAAATTGTCTTAATTTTTCACAAGCTAAACTCGCCCTAGCTCTCAAGCGAGCCTGAGCGTGTGGCCGTGGTGGTACCGGGGGCGGCGTGAGTGGCCGTTGTCCTGGCCGTGGAGGGAGTGGTGGCGGGGTAGGTGCCCGTGGCTCTGGCTCCGGCTGCGGTTCCGGCTCTGGCGCGGCCGGTGGCGGGACGTCTGAAACTCCCAGACCGGCATCAACCTTTGGCTCCTCTCTCAACGGTTCTGGGATCATCTAAAATAATGAAATAAATTGAGGATTGGAAATAAACTGAAAATAAAGTTTCTGGGCTCTATGAGGTTTTCCAAAAACGGATTGAAAAGAAATAATTGAGAATTTTCGTTTGAAGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>506 235 183 76</canonical_bands>
                <polymorphic_bands>741 183 76</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>369 267 234 130</canonical_bands>
                <polymorphic_bands>636 234 130</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACTCGGTTGAGAAATAGTTAGT</pcr_primer_p1>
		<pcr_primer_p2>CGAGTTTAGCTTGTGAAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACTCGGTTGAGAAATAGTTAGTGGCAATATTGCAATACGCTTCTATTCAATTAAAAATCGCACAATAATGCATCCACTAAAACCGTCAGGTGGTGAATAAACCCTTCTCACCTGCTCGTCTCTTCTTGCTCTTCTGAACCGATGGATCCATTCCATATTCTGCGGAAGGCCCAGTGCTCGTGGTGGTGGCGACATCTCCTGAAAAAGTTACAGATGAAAATTGTCTTAATTTTTCACAAGCTAAACTCG</canonical_amplicon>
		<polymorphic_amplicon>CACTCGGTTGAGAAATAGTTAGTGGCAATATTGCAATACGCTTCTATTCAATTAAAAATCGCACAATAATGCATCCACTAAAAYCGTCAGGTGGTGAATAAACCCTTCTCACCTGCTCGTCTCTTCTTGCTCTTCTGAACCGATGGATCCATTCCATATTCTGCGGAAGGCCCAGTGCTCGTGGTGGTGGCGACATCTCCTGAAAAAGTTACAGATGAAAATTGTCTTAATTTTTCACAAGCTAAACTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8195</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>60324</contig_pos>
        <strand>+</strand>
        <context>ATAAACCCTT[C/T]TCACCTGCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCGCACAATAATGCATCCACTAAAACCGTCAGGTGGTGAATAAACCCTT</left_flank>
        <right_flank>TCACCTGCTCGTCTCTTCTTGCTCTTCTGAACCGATGGATCCATTCCATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTAACAACGTATTTATATCTTTGACGAGAACCGAGATAAATTAGGCTATAGTTGGAAGTTTAGAGACACTTCTATTACAGGTTTTAGGGTATCTAACAAAATTAATCGAATTACAGAATTTTGAAACTTTTGAGTTATGGAGCTTCTGAGATTTATAAATACAGAATTTTTTCAAACTTTCGATTATCAAAAATTTGGCAACTGAACGGTTTAGAACTAACTACGTAGCAGTAGTTAGTTTTAGAACTGGCCATTTCAGAACTGACAACTACATCCGGTGAATTGGAATTGACTCTGTTGCAAATGCTCTTTCAGAACTGAGAATTTTCTCAGGTTGAACTTAAAAACTTGTCACGTTACAACAAAAAATTGGAACACCCTCTTCAAAACCACTCGGTTGAGAAATAGTTAGTGGCAATATTGCAATACGCTTCTATTCAATTAAAAATCGCACAATAATGCATCCACTAAAACCGTCAGGTGGTGAATAAACCCTTCTCACCTGCTCGTCTCTTCTTGCTCTTCTGAACCGATGGATCCATTCCATATTCTGCGGAAGGCCCAGTGCTCGTGGTGGTGGCGACATCTCCTGAAAAAGTTACAGATGAAAATTGTCTTAATTTTTCACAAGCTAAACTCGCCCTAGCTCTCAAGCGAGCCTGAGCGTGTGGCCGTGGTGGTACCGGGGGCGGCGTGAGTGGCCGTTGTCCTGGCCGTGGAGGGAGTGGTGGCGGGGTAGGTGCCCGTGGCTCTGGCTCCGGCTGCGGTTCCGGCTCTGGCGCGGCCGGTGGCGGGACGTCTGAAACTCCCAGACCGGCATCAACCTTTGGCTCCTCTCTCAACGGTTCTGGGATCATCTAAAATAATGAAATAAATTGAGGATTGGAAATAAACTGAAAATAAAGTTTCTGGGCTCTATGAGGTTTTCCAAAAACGGATTGAAAAGAAATAATTGAGAATTTTCGTTTGAAGCAATACCAACATGTTATCGCAATCAA</canonical>
            <polymorphic>AGTTAACAACGTATTTATATCTTTGACGAGAACCGAGATAAATTAGGCTATAGTTGGAAGTTTAGAGACACTTCTATTACAGGTTTTAGGGTATCTAACAAAATTAATCGAATTACAGAATTTTGAAACTTTTGAGTTATGGAGCTTCTGAGATTTATAAATACAGAATTTTTTCAAACTTTCGATTATCAAAAATTTGGCAACTGAACGGTTTAGAACTAACTACGTAGCAGTAGTTAGTTTTAGAACTGGCCATTTCAGAACTGACAACTACATCCGGTGAATTGGAATTGACTCTGTTGCAAATGCTCTTTCAGAACTGAGAATTTTCTCAGGTTGAACTTAAAAACTTGTCACGTTACAACAAAAAATTGGAACACCCTCTTCAAAACCACTCGGTTGAGAAATAGTTAGTGGCAATATTGCAATACGCTTCTATTCAATTAAAAATCGCACAATAATGCATCCACTAAAACCGTCAGGTGGTGAATAAACCCTTYTCACCTGCTCGTCTCTTCTTGCTCTTCTGAACCGATGGATCCATTCCATATTCTGCGGAAGGCCCAGTGCTCGTGGTGGTGGCGACATCTCCTGAAAAAGTTACAGATGAAAATTGTCTTAATTTTTCACAAGCTAAACTCGCCCTAGCTCTCAAGCGAGCCTGAGCGTGTGGCCGTGGTGGTACCGGGGGCGGCGTGAGTGGCCGTTGTCCTGGCCGTGGAGGGAGTGGTGGCGGGGTAGGTGCCCGTGGCTCTGGCTCCGGCTGCGGTTCCGGCTCTGGCGCGGCCGGTGGCGGGACGTCTGAAACTCCCAGACCGGCATCAACCTTTGGCTCCTCTCTCAACGGTTCTGGGATCATCTAAAATAATGAAATAAATTGAGGATTGGAAATAAACTGAAAATAAAGTTTCTGGGCTCTATGAGGTTTTCCAAAAACGGATTGAAAAGAAATAATTGAGAATTTTCGTTTGAAGCAATACCAACATGTTATCGCAATCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTCGGTTGAGAAATAGTTAGT</pcr_primer_p1>
		<pcr_primer_p2>CGAGTTTAGCTTGTGAAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACTCGGTTGAGAAATAGTTAGTGGCAATATTGCAATACGCTTCTATTCAATTAAAAATCGCACAATAATGCATCCACTAAAACCGTCAGGTGGTGAATAAACCCTTCTCACCTGCTCGTCTCTTCTTGCTCTTCTGAACCGATGGATCCATTCCATATTCTGCGGAAGGCCCAGTGCTCGTGGTGGTGGCGACATCTCCTGAAAAAGTTACAGATGAAAATTGTCTTAATTTTTCACAAGCTAAACTCG</canonical_amplicon>
		<polymorphic_amplicon>CACTCGGTTGAGAAATAGTTAGTGGCAATATTGCAATACGCTTCTATTCAATTAAAAATCGCACAATAATGCATCCACTAAAACCGTCAGGTGGTGAATAAACCCTTYTCACCTGCTCGTCTCTTCTTGCTCTTCTGAACCGATGGATCCATTCCATATTCTGCGGAAGGCCCAGTGCTCGTGGTGGTGGCGACATCTCCTGAAAAAGTTACAGATGAAAATTGTCTTAATTTTTCACAAGCTAAACTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8196</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>60383</contig_pos>
        <strand>+</strand>
        <context>TATTCTGCGG[A/G]AGGCCCAGTR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGTCTCTTCTTGCTCTTCTGAACCGATGGATCCATTCCATATTCTGCGG</left_flank>
        <right_flank>AGGCCCAGTGCTCGTGGTGGTGGCGACATCTCCTGAAAAAGTTACAGATG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTAGAGACACTTCTATTACAGGTTTTAGGGTATCTAACAAAATTAATCGAATTACAGAATTTTGAAACTTTTGAGTTATGGAGCTTCTGAGATTTATAAATACAGAATTTTTTCAAACTTTCGATTATCAAAAATTTGGCAACTGAACGGTTTAGAACTAACTACGTAGCAGTAGTTAGTTTTAGAACTGGCCATTTCAGAACTGACAACTACATCCGGTGAATTGGAATTGACTCTGTTGCAAATGCTCTTTCAGAACTGAGAATTTTCTCAGGTTGAACTTAAAAACTTGTCACGTTACAACAAAAAATTGGAACACCCTCTTCAAAACCACTCGGTTGAGAAATAGTTAGTGGCAATATTGCAATACGCTTCTATTCAATTAAAAATCGCACAATAATGCATCCACTAAAACCGTCAGGTGGTGAATAAACCCTTCTCACCTGCTCGTCTCTTCTTGCTCTTCTGAACCGATGGATCCATTCCATATTCTGCGGAAGGCCCAGTGCTCGTGGTGGTGGCGACATCTCCTGAAAAAGTTACAGATGAAAATTGTCTTAATTTTTCACAAGCTAAACTCGCCCTAGCTCTCAAGCGAGCCTGAGCGTGTGGCCGTGGTGGTACCGGGGGCGGCGTGAGTGGCCGTTGTCCTGGCCGTGGAGGGAGTGGTGGCGGGGTAGGTGCCCGTGGCTCTGGCTCCGGCTGCGGTTCCGGCTCTGGCGCGGCCGGTGGCGGGACGTCTGAAACTCCCAGACCGGCATCAACCTTTGGCTCCTCTCTCAACGGTTCTGGGATCATCTAAAATAATGAAATAAATTGAGGATTGGAAATAAACTGAAAATAAAGTTTCTGGGCTCTATGAGGTTTTCCAAAAACGGATTGAAAAGAAATAATTGAGAATTTTCGTTTGAAGCAATACCAACATGTTATCGCAATCAAAATCTCTGGGAAGTTGACAATAACACTATCTAATTTTTGAGAAGCGGTATAAAAACAAA</canonical>
            <polymorphic>GTTTAGAGACACTTCTATTACAGGTTTTAGGGTATCTAACAAAATTAATCGAATTACAGAATTTTGAAACTTTTGAGTTATGGAGCTTCTGAGATTTATAAATACAGAATTTTTTCAAACTTTCGATTATCAAAAATTTGGCAACTGAACGGTTTAGAACTAACTACGTAGCAGTAGTTAGTTTTAGAACTGGCCATTTCAGAACTGACAACTACATCCGGTGAATTGGAATTGACTCTGTTGCAAATGCTCTTTCAGAACTGAGAATTTTCTCAGGTTGAACTTAAAAACTTGTCACGTTACAACAAAAAATTGGAACACCCTCTTCAAAACCACTCGGTTGAGAAATAGTTAGTGGCAATATTGCAATACGCTTCTATTCAATTAAAAATCGCACAATAATGCATCCACTAAAACCGTCAGGTGGTGAATAAACCCTTCTCACCTGCTCGTCTCTTCTTGCTCTTCTGAACCGATGGATCCATTCCATATTCTGCGGRAGGCCCAGTGCTCGTGGTGGTGGCGACATCTCCTGAAAAAGTTACAGATGAAAATTGTCTTAATTTTTCACAAGCTAAACTCGCCCTAGCTCTCAAGCGAGCCTGAGCGTGTGGCCGTGGTGGTACCGGGGGCGGCGTGAGTGGCCGTTGTCCTGGCCGTGGAGGGAGTGGTGGCGGGGTAGGTGCCCGTGGCTCTGGCTCCGGCTGCGGTTCCGGCTCTGGCGCGGCCGGTGGCGGGACGTCTGAAACTCCCAGACCGGCATCAACCTTTGGCTCCTCTCTCAACGGTTCTGGGATCATCTAAAATAATGAAATAAATTGAGGATTGGAAATAAACTGAAAATAAAGTTTCTGGGCTCTATGAGGTTTTCCAAAAACGGATTGAAAAGAAATAATTGAGAATTTTCGTTTGAAGCAATACCAACATGTTATCGCAATCAAAATCTCTGGGAAGTTGACAATAACACTATCTAATTTTTGAGAAGCGGTATAAAAACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTCGGTTGAGAAATAGTTAGT</pcr_primer_p1>
		<pcr_primer_p2>CGAGTTTAGCTTGTGAAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACTCGGTTGAGAAATAGTTAGTGGCAATATTGCAATACGCTTCTATTCAATTAAAAATCGCACAATAATGCATCCACTAAAACCGTCAGGTGGTGAATAAACCCTTCTCACCTGCTCGTCTCTTCTTGCTCTTCTGAACCGATGGATCCATTCCATATTCTGCGGAAGGCCCAGTGCTCGTGGTGGTGGCGACATCTCCTGAAAAAGTTACAGATGAAAATTGTCTTAATTTTTCACAAGCTAAACTCG</canonical_amplicon>
		<polymorphic_amplicon>CACTCGGTTGAGAAATAGTTAGTGGCAATATTGCAATACGCTTCTATTCAATTAAAAATCGCACAATAATGCATCCACTAAAACCGTCAGGTGGTGAATAAACCCTTCTCACCTGCTCGTCTCTTCTTGCTCTTCTGAACCGATGGATCCATTCCATATTCTGCGGRAGGCCCAGTGCTCGTGGTGGTGGCGACATCTCCTGAAAAAGTTACAGATGAAAATTGTCTTAATTTTTCACAAGCTAAACTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8197</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>60393</contig_pos>
        <strand>+</strand>
        <context>RAGGCCCAGT[A/G]CTCGTGGTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGCTCTTCTGAACCGATGGATCCATTCCATATTCTGCGGAAGGCCCAGT</left_flank>
        <right_flank>CTCGTGGTGGTGGCGACATCTCCTGAAAAAGTTACAGATGAAAATTGTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTCTATTACAGGTTTTAGGGTATCTAACAAAATTAATCGAATTACAGAATTTTGAAACTTTTGAGTTATGGAGCTTCTGAGATTTATAAATACAGAATTTTTTCAAACTTTCGATTATCAAAAATTTGGCAACTGAACGGTTTAGAACTAACTACGTAGCAGTAGTTAGTTTTAGAACTGGCCATTTCAGAACTGACAACTACATCCGGTGAATTGGAATTGACTCTGTTGCAAATGCTCTTTCAGAACTGAGAATTTTCTCAGGTTGAACTTAAAAACTTGTCACGTTACAACAAAAAATTGGAACACCCTCTTCAAAACCACTCGGTTGAGAAATAGTTAGTGGCAATATTGCAATACGCTTCTATTCAATTAAAAATCGCACAATAATGCATCCACTAAAACCGTCAGGTGGTGAATAAACCCTTCTCACCTGCTCGTCTCTTCTTGCTCTTCTGAACCGATGGATCCATTCCATATTCTGCGGAAGGCCCAGTGCTCGTGGTGGTGGCGACATCTCCTGAAAAAGTTACAGATGAAAATTGTCTTAATTTTTCACAAGCTAAACTCGCCCTAGCTCTCAAGCGAGCCTGAGCGTGTGGCCGTGGTGGTACCGGGGGCGGCGTGAGTGGCCGTTGTCCTGGCCGTGGAGGGAGTGGTGGCGGGGTAGGTGCCCGTGGCTCTGGCTCCGGCTGCGGTTCCGGCTCTGGCGCGGCCGGTGGCGGGACGTCTGAAACTCCCAGACCGGCATCAACCTTTGGCTCCTCTCTCAACGGTTCTGGGATCATCTAAAATAATGAAATAAATTGAGGATTGGAAATAAACTGAAAATAAAGTTTCTGGGCTCTATGAGGTTTTCCAAAAACGGATTGAAAAGAAATAATTGAGAATTTTCGTTTGAAGCAATACCAACATGTTATCGCAATCAAAATCTCTGGGAAGTTGACAATAACACTATCTAATTTTTGAGAAGCGGTATAAAAACAAATGAGAGGGGA</canonical>
            <polymorphic>ACTTCTATTACAGGTTTTAGGGTATCTAACAAAATTAATCGAATTACAGAATTTTGAAACTTTTGAGTTATGGAGCTTCTGAGATTTATAAATACAGAATTTTTTCAAACTTTCGATTATCAAAAATTTGGCAACTGAACGGTTTAGAACTAACTACGTAGCAGTAGTTAGTTTTAGAACTGGCCATTTCAGAACTGACAACTACATCCGGTGAATTGGAATTGACTCTGTTGCAAATGCTCTTTCAGAACTGAGAATTTTCTCAGGTTGAACTTAAAAACTTGTCACGTTACAACAAAAAATTGGAACACCCTCTTCAAAACCACTCGGTTGAGAAATAGTTAGTGGCAATATTGCAATACGCTTCTATTCAATTAAAAATCGCACAATAATGCATCCACTAAAACCGTCAGGTGGTGAATAAACCCTTCTCACCTGCTCGTCTCTTCTTGCTCTTCTGAACCGATGGATCCATTCCATATTCTGCGGAAGGCCCAGTRCTCGTGGTGGTGGCGACATCTCCTGAAAAAGTTACAGATGAAAATTGTCTTAATTTTTCACAAGCTAAACTCGCCCTAGCTCTCAAGCGAGCCTGAGCGTGTGGCCGTGGTGGTACCGGGGGCGGCGTGAGTGGCCGTTGTCCTGGCCGTGGAGGGAGTGGTGGCGGGGTAGGTGCCCGTGGCTCTGGCTCCGGCTGCGGTTCCGGCTCTGGCGCGGCCGGTGGCGGGACGTCTGAAACTCCCAGACCGGCATCAACCTTTGGCTCCTCTCTCAACGGTTCTGGGATCATCTAAAATAATGAAATAAATTGAGGATTGGAAATAAACTGAAAATAAAGTTTCTGGGCTCTATGAGGTTTTCCAAAAACGGATTGAAAAGAAATAATTGAGAATTTTCGTTTGAAGCAATACCAACATGTTATCGCAATCAAAATCTCTGGGAAGTTGACAATAACACTATCTAATTTTTGAGAAGCGGTATAAAAACAAATGAGAGGGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>502 175 171 152</canonical_bands>
                <polymorphic_bands>677 171 152</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>233 213 74 66 48 44 42 41 39 23 22 18 17 16 15 15 14 12 9 6 6 6 4 3 3 3 3 3 2</canonical_bands>
                <polymorphic_bands>233 213 74 72 48 44 42 41 39 23 22 18 17 16 15 15 14 12 9 6 6 4 3 3 3 3 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACTCGGTTGAGAAATAGTTAGT</pcr_primer_p1>
		<pcr_primer_p2>CGAGTTTAGCTTGTGAAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACTCGGTTGAGAAATAGTTAGTGGCAATATTGCAATACGCTTCTATTCAATTAAAAATCGCACAATAATGCATCCACTAAAACCGTCAGGTGGTGAATAAACCCTTCTCACCTGCTCGTCTCTTCTTGCTCTTCTGAACCGATGGATCCATTCCATATTCTGCGGAAGGCCCAGTGCTCGTGGTGGTGGCGACATCTCCTGAAAAAGTTACAGATGAAAATTGTCTTAATTTTTCACAAGCTAAACTCG</canonical_amplicon>
		<polymorphic_amplicon>CACTCGGTTGAGAAATAGTTAGTGGCAATATTGCAATACGCTTCTATTCAATTAAAAATCGCACAATAATGCATCCACTAAAACCGTCAGGTGGTGAATAAACCCTTCTCACCTGCTCGTCTCTTCTTGCTCTTCTGAACCGATGGATCCATTCCATATTCTGCGGAAGGCCCAGTRCTCGTGGTGGTGGCGACATCTCCTGAAAAAGTTACAGATGAAAATTGTCTTAATTTTTCACAAGCTAAACTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8198</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>60479</contig_pos>
        <strand>+</strand>
        <context>CTAGCTCTCA[A/C]GCGAGCCTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGATGAAAATTGTCTTAATTTTTCACAAGCTAAACTCGCCCTAGCTCTCA</left_flank>
        <right_flank>GCGAGCCTGAGCGTGTGGCCGTGGTGGTACCGGGGGCGGCGTGAGTGGCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATAAATACAGAATTTTTTCAAACTTTCGATTATCAAAAATTTGGCAACTGAACGGTTTAGAACTAACTACGTAGCAGTAGTTAGTTTTAGAACTGGCCATTTCAGAACTGACAACTACATCCGGTGAATTGGAATTGACTCTGTTGCAAATGCTCTTTCAGAACTGAGAATTTTCTCAGGTTGAACTTAAAAACTTGTCACGTTACAACAAAAAATTGGAACACCCTCTTCAAAACCACTCGGTTGAGAAATAGTTAGTGGCAATATTGCAATACGCTTCTATTCAATTAAAAATCGCACAATAATGCATCCACTAAAACCGTCAGGTGGTGAATAAACCCTTCTCACCTGCTCGTCTCTTCTTGCTCTTCTGAACCGATGGATCCATTCCATATTCTGCGGAAGGCCCAGTGCTCGTGGTGGTGGCGACATCTCCTGAAAAAGTTACAGATGAAAATTGTCTTAATTTTTCACAAGCTAAACTCGCCCTAGCTCTCAAGCGAGCCTGAGCGTGTGGCCGTGGTGGTACCGGGGGCGGCGTGAGTGGCCGTTGTCCTGGCCGTGGAGGGAGTGGTGGCGGGGTAGGTGCCCGTGGCTCTGGCTCCGGCTGCGGTTCCGGCTCTGGCGCGGCCGGTGGCGGGACGTCTGAAACTCCCAGACCGGCATCAACCTTTGGCTCCTCTCTCAACGGTTCTGGGATCATCTAAAATAATGAAATAAATTGAGGATTGGAAATAAACTGAAAATAAAGTTTCTGGGCTCTATGAGGTTTTCCAAAAACGGATTGAAAAGAAATAATTGAGAATTTTCGTTTGAAGCAATACCAACATGTTATCGCAATCAAAATCTCTGGGAAGTTGACAATAACACTATCTAATTTTTGAGAAGCGGTATAAAAACAAATGAGAGGGGACAAGTCTGTTATCAAGATTGAACTGTTTTTCATCGCACTTACAACTAAGTGTTCTGCTTATGTATGATCACATATTTAGTCCAGAG</canonical>
            <polymorphic>TATAAATACAGAATTTTTTCAAACTTTCGATTATCAAAAATTTGGCAACTGAACGGTTTAGAACTAACTACGTAGCAGTAGTTAGTTTTAGAACTGGCCATTTCAGAACTGACAACTACATCCGGTGAATTGGAATTGACTCTGTTGCAAATGCTCTTTCAGAACTGAGAATTTTCTCAGGTTGAACTTAAAAACTTGTCACGTTACAACAAAAAATTGGAACACCCTCTTCAAAACCACTCGGTTGAGAAATAGTTAGTGGCAATATTGCAATACGCTTCTATTCAATTAAAAATCGCACAATAATGCATCCACTAAAACCGTCAGGTGGTGAATAAACCCTTCTCACCTGCTCGTCTCTTCTTGCTCTTCTGAACCGATGGATCCATTCCATATTCTGCGGAAGGCCCAGTGCTCGTGGTGGTGGCGACATCTCCTGAAAAAGTTACAGATGAAAATTGTCTTAATTTTTCACAAGCTAAACTCGCCCTAGCTCTCAMGCGAGCCTGAGCGTGTGGCCGTGGTGGTACCGGGGGCGGCGTGAGTGGCCGTTGTCCTGGCCGTGGAGGGAGTGGTGGCGGGGTAGGTGCCCGTGGCTCTGGCTCCGGCTGCGGTTCCGGCTCTGGCGCGGCCGGTGGCGGGACGTCTGAAACTCCCAGACCGGCATCAACCTTTGGCTCCTCTCTCAACGGTTCTGGGATCATCTAAAATAATGAAATAAATTGAGGATTGGAAATAAACTGAAAATAAAGTTTCTGGGCTCTATGAGGTTTTCCAAAAACGGATTGAAAAGAAATAATTGAGAATTTTCGTTTGAAGCAATACCAACATGTTATCGCAATCAAAATCTCTGGGAAGTTGACAATAACACTATCTAATTTTTGAGAAGCGGTATAAAAACAAATGAGAGGGGACAAGTCTGTTATCAAGATTGAACTGTTTTTCATCGCACTTACAACTAAGTGTTCTGCTTATGTATGATCACATATTTAGTCCAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTGAAAAAGTTACAGATGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TATTTTAGATGATCCCAGAACC</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>CCTGAAAAAGTTACAGATGAAAATTGTCTTAATTTTTCACAAGCTAAACTCGCCCTAGCTCTCAAGCGAGCCTGAGCGTGTGGCCGTGGTGGTACCGGGGGCGGCGTGAGTGGCCGTTGTCCTGGCCGTGGAGGGAGTGGTGGCGGGGTAGGTGCCCGTGGCTCTGGCTCCGGCTGCGGTTCCGGCTCTGGCGCGGCCGGTGGCGGGACGTCTGAAACTCCCAGACCGGCATCAACCTTTGGCTCCTCTCTCAACGGTTCTGGGATCATCTAAAATA</canonical_amplicon>
		<polymorphic_amplicon>CCTGAAAAAGTTACAGATGAAAATTGTCTTAATTTTTCACAAGCTAAACTCGCCCTAGCTCTCAMGCGAGCCTGAGCGTGTGGCCGTGGTGGTACCGGGGGCGGCGTGAGTGGCCGTTGTCCTGGCCGTGGAGGGAGTGGTGGCGGGGTAGGTGCCCGTGGCTCTGGCTCCGGCTGCGGTTCCGGCTCTGGCGCGGCCGGTGGCGGGACGTCTGAAACTCCCAGACCGGCATCAACCTTTGGCTCCTCTCTCAACGGTTCTGGGATCATCTAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8199</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>62900</contig_pos>
        <strand>+</strand>
        <context>GGATGARCAT[A/C]TTTTTGCCCG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCAT</left_flank>
        <right_flank>TTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGTTGAAGTTTTCAGTAAAAGGAATACTCAAAAACAGGCCAAAACAAGCCGATAATTGTTTTAACTTCTTAAAATATGTATGATAGATCACAACAAGTGCTAGTAGACGACGTTATTCGAAAAACGGTGTCTTGCCAACGAGAAAAGTCAAGATTTTAAAAACATGTGCCCAAACACCATGGTCCGTTTTTCATTCAGCCTGTATTTTCTTCTGAAGCAAGACACAAGGCATCAAAGAGTGTCCAGTTTCAGCACATGCTGACTGCCATTCTCTGCGTTAGTTAGTAAAAAATAGTGAACTTGAAAAATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTGAAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTACAGAATGTTGAAAATCCGAGTTTCAAAATTTCGGAATTTCTGTATGTTCCGATTTTTGAAACTGTTTTTCATCAATAAGAAAAATTGGAAAAAAATTGACGAACACTCCTGATTAAAACGAAAAA</canonical>
            <polymorphic>TGAGTTGAAGTTTTCAGTAAAAGGAATACTCAAAAACAGGCCAAAACAAGCCGATAATTGTTTTAACTTCTTAAAATATGTATGATAGATCACAACAAGTGCTAGTAGACGACGTTATTCGAAAAACGGTGTCTTGCCAACGAGAAAAGTCAAGATTTTAAAAACATGTGCCCAAACACCATGGTCCGTTTTTCATTCAGCCTGTATTTTCTTCTGAAGCAAGACACAAGGCATCAAAGAGTGTCCAGTTTCAGCACATGCTGACTGCCATTCTCTGCGTTAGTTAGTAAAAAATAGTGAACTTGAAAAATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATMTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTGAAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTACAGAATGTTGAAAATCCGAGTTTCAAAATTTCGGAATTTCTGTATGTTCCGATTTTTGAAACTGTTTTTCATCAATAAGAAAAATTGGAAAAAAATTGACGAACACTCCTGATTAAAACGAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATNNNNATC</site>
                <isoschizomers>
                    <enzyme>BsaBI</enzyme>
                    <enzyme>Bse8I</enzyme>
                    <enzyme>BseJI</enzyme>
                    <enzyme>BsiBI</enzyme>
                    <enzyme>BsrBRI</enzyme>
                    <enzyme>MamI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGCTTGTAAGACAGCTCGTA</pcr_primer_p1>
		<pcr_primer_p2>GCTTCAATCATCTTGTTGTAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGC</canonical_amplicon>
		<polymorphic_amplicon>ATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATMTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8200</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>62896</contig_pos>
        <strand>+</strand>
        <context>TGGAGGATGA[A/G]CATMTTTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGA</left_flank>
        <right_flank>CATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGTGAGTTGAAGTTTTCAGTAAAAGGAATACTCAAAAACAGGCCAAAACAAGCCGATAATTGTTTTAACTTCTTAAAATATGTATGATAGATCACAACAAGTGCTAGTAGACGACGTTATTCGAAAAACGGTGTCTTGCCAACGAGAAAAGTCAAGATTTTAAAAACATGTGCCCAAACACCATGGTCCGTTTTTCATTCAGCCTGTATTTTCTTCTGAAGCAAGACACAAGGCATCAAAGAGTGTCCAGTTTCAGCACATGCTGACTGCCATTCTCTGCGTTAGTTAGTAAAAAATAGTGAACTTGAAAAATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTGAAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTACAGAATGTTGAAAATCCGAGTTTCAAAATTTCGGAATTTCTGTATGTTCCGATTTTTGAAACTGTTTTTCATCAATAAGAAAAATTGGAAAAAAATTGACGAACACTCCTGATTAAAACGA</canonical>
            <polymorphic>ATTGTGAGTTGAAGTTTTCAGTAAAAGGAATACTCAAAAACAGGCCAAAACAAGCCGATAATTGTTTTAACTTCTTAAAATATGTATGATAGATCACAACAAGTGCTAGTAGACGACGTTATTCGAAAAACGGTGTCTTGCCAACGAGAAAAGTCAAGATTTTAAAAACATGTGCCCAAACACCATGGTCCGTTTTTCATTCAGCCTGTATTTTCTTCTGAAGCAAGACACAAGGCATCAAAGAGTGTCCAGTTTCAGCACATGCTGACTGCCATTCTCTGCGTTAGTTAGTAAAAAATAGTGAACTTGAAAAATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGARCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTGAAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTACAGAATGTTGAAAATCCGAGTTTCAAAATTTCGGAATTTCTGTATGTTCCGATTTTTGAAACTGTTTTTCATCAATAAGAAAAATTGGAAAAAAATTGACGAACACTCCTGATTAAAACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGCTTGTAAGACAGCTCGTA</pcr_primer_p1>
		<pcr_primer_p2>GCTTCAATCATCTTGTTGTAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGC</canonical_amplicon>
		<polymorphic_amplicon>ATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGARCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8201</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>62810</contig_pos>
        <strand>+</strand>
        <context>GCCGCTCGCA[C/T]AGCCTCTGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCA</left_flank>
        <right_flank>AGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTG</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGGCATAATCATTATATTCTAGTTTCCATTTTACAGACAGTTTTGCGCGCAGCGGTCGCATACGTCTACCGTGGAAAGGAACTGATTGTGAGTTGAAGTTTTCAGTAAAAGGAATACTCAAAAACAGGCCAAAACAAGCCGATAATTGTTTTAACTTCTTAAAATATGTATGATAGATCACAACAAGTGCTAGTAGACGACGTTATTCGAAAAACGGTGTCTTGCCAACGAGAAAAGTCAAGATTTTAAAAACATGTGCCCAAACACCATGGTCCGTTTTTCATTCAGCCTGTATTTTCTTCTGAAGCAAGACACAAGGCATCAAAGAGTGTCCAGTTTCAGCACATGCTGACTGCCATTCTCTGCGTTAGTTAGTAAAAAATAGTGAACTTGAAAAATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTGAAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTACAGAATGTTGAAAATCCGAGTTTCAAAATTTCGGA</canonical>
            <polymorphic>ATAGGCATAATCATTATATTCTAGTTTCCATTTTACAGACAGTTTTGCGCGCAGCGGTCGCATACGTCTACCGTGGAAAGGAACTGATTGTGAGTTGAAGTTTTCAGTAAAAGGAATACTCAAAAACAGGCCAAAACAAGCCGATAATTGTTTTAACTTCTTAAAATATGTATGATAGATCACAACAAGTGCTAGTAGACGACGTTATTCGAAAAACGGTGTCTTGCCAACGAGAAAAGTCAAGATTTTAAAAACATGTGCCCAAACACCATGGTCCGTTTTTCATTCAGCCTGTATTTTCTTCTGAAGCAAGACACAAGGCATCAAAGAGTGTCCAGTTTCAGCACATGCTGACTGCCATTCTCTGCGTTAGTTAGTAAAAAATAGTGAACTTGAAAAATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCAYAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTGAAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTACAGAATGTTGAAAATCCGAGTTTCAAAATTTCGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAGNNNCTG</site>
                <isoschizomers>
                    <enzyme>AlwNI</enzyme>
                    <enzyme>CaiI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>295 95 90 75 53 48 48 46 43 39 35 30 23 17 17 16 13 9 8</canonical_bands>
                <polymorphic_bands>295 95 90 75 53 48 48 46 43 39 39 35 30 17 17 13 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGCTTGTAAGACAGCTCGTA</pcr_primer_p1>
		<pcr_primer_p2>GCTTCAATCATCTTGTTGTAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGC</canonical_amplicon>
		<polymorphic_amplicon>ATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCAYAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8202</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>62780</contig_pos>
        <strand></strand>
        <context>CGGTTTTCAG[A/C]MGCAGCGCCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAG</left_flank>
        <right_flank>GGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTC</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAACCTGACCAACATTGAAATGGTATTAAATAGGCATAATCATTATATTCTAGTTTCCATTTTACAGACAGTTTTGCGCGCAGCGGTCGCATACGTCTACCGTGGAAAGGAACTGATTGTGAGTTGAAGTTTTCAGTAAAAGGAATACTCAAAAACAGGCCAAAACAAGCCGATAATTGTTTTAACTTCTTAAAATATGTATGATAGATCACAACAAGTGCTAGTAGACGACGTTATTCGAAAAACGGTGTCTTGCCAACGAGAAAAGTCAAGATTTTAAAAACATGTGCCCAAACACCATGGTCCGTTTTTCATTCAGCCTGTATTTTCTTCTGAAGCAAGACACAAGGCATCAAAGAGTGTCCAGTTTCAGCACATGCTGACTGCCATTCTCTGCGTTAGTTAGTAAAAAATAGTGAACTTGAAAAATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTGAAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTACAGAA</canonical>
            <polymorphic>GTAACCTGACCAACATTGAAATGGTATTAAATAGGCATAATCATTATATTCTAGTTTCCATTTTACAGACAGTTTTGCGCGCAGCGGTCGCATACGTCTACCGTGGAAAGGAACTGATTGTGAGTTGAAGTTTTCAGTAAAAGGAATACTCAAAAACAGGCCAAAACAAGCCGATAATTGTTTTAACTTCTTAAAATATGTATGATAGATCACAACAAGTGCTAGTAGACGACGTTATTCGAAAAACGGTGTCTTGCCAACGAGAAAAGTCAAGATTTTAAAAACATGTGCCCAAACACCATGGTCCGTTTTTCATTCAGCCTGTATTTTCTTCTGAAGCAAGACACAAGGCATCAAAGAGTGTCCAGTTTCAGCACATGCTGACTGCCATTCTCTGCGTTAGTTAGTAAAAAATAGTGAACTTGAAAAATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGMGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTGAAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTACAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>489 335 163 13</canonical_bands>
                <polymorphic_bands>652 335 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGCTTGTAAGACAGCTCGTA</pcr_primer_p1>
		<pcr_primer_p2>GCTTCAATCATCTTGTTGTAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGC</canonical_amplicon>
		<polymorphic_amplicon>ATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGMGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8203</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>63225</contig_pos>
        <strand>+</strand>
        <context>TATAAATTTT[A/G]AAACCAATCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTT</left_flank>
        <right_flank>AAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTGAAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTACAGAATGTTGAAAATCCGAGTTTCAAAATTTCGGAATTTCTGTATGTTCCGATTTTTGAAACTGTTTTTCATCAATAAGAAAAATTGGAAAAAAATTGACGAACACTCCTGATTAAAACGAAAAAAGTCTCCTTTTACCACCTAGATTGATATTCCTATTGTTTCTGAATTTTTTCTGAAGTTTGAAGTCGTTAACAAATGACTTCACCAATTTTCACACTGTTTGCTGAAGGTCACATATTCACGGTTAAATTTTAAATTATTCTAATTTCAAAATCGATATAATAGAGCTTTCAAGAAAAATGAATTTGAATGAGTCAGAAACAAAAATGAATTTTGGAACAATTCAAAATATATGCGAGACTGAAAGACCTCCATCATGTGATGTTTTTCCCCCAGACGTGCTTAGTCAGACAGTTCCATGTCTTGGTCACTAAAAAGACACTTGTT</canonical>
            <polymorphic>TCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTRAAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTACAGAATGTTGAAAATCCGAGTTTCAAAATTTCGGAATTTCTGTATGTTCCGATTTTTGAAACTGTTTTTCATCAATAAGAAAAATTGGAAAAAAATTGACGAACACTCCTGATTAAAACGAAAAAAGTCTCCTTTTACCACCTAGATTGATATTCCTATTGTTTCTGAATTTTTTCTGAAGTTTGAAGTCGTTAACAAATGACTTCACCAATTTTCACACTGTTTGCTGAAGGTCACATATTCACGGTTAAATTTTAAATTATTCTAATTTCAAAATCGATATAATAGAGCTTTCAAGAAAAATGAATTTGAATGAGTCAGAAACAAAAATGAATTTTGGAACAATTCAAAATATATGCGAGACTGAAAGACCTCCATCATGTGATGTTTTTCCCCCAGACGTGCTTAGTCAGACAGTTCCATGTCTTGGTCACTAAAAAGACACTTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGATGATTGAAGCAGTGGA</pcr_primer_p1>
		<pcr_primer_p2>TTTCCAATTTTTCTTATTGATGA</pcr_primer_p2>
		<pcr_amplicon_size>422</pcr_amplicon_size>
		<canonical_amplicon>AAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTGAAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTACAGAATGTTGAAAATCCGAGTTTCAAAATTTCGGAATTTCTGTATGTTCCGATTTTTGAAACTGTTTTTCATCAATAAGAAAAATTGGAAA</canonical_amplicon>
		<polymorphic_amplicon>AAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTRAAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTACAGAATGTTGAAAATCCGAGTTTCAAAATTTCGGAATTTCTGTATGTTCCGATTTTTGAAACTGTTTTTCATCAATAAGAAAAATTGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8204</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>63180</contig_pos>
        <strand>+</strand>
        <context>AATGCAAAAA[G/T]AATAAATTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAA</left_flank>
        <right_flank>AATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTGAAACC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTTAGTAAAAAATAGTGAACTTGAAAAATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTGAAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTACAGAATGTTGAAAATCCGAGTTTCAAAATTTCGGAATTTCTGTATGTTCCGATTTTTGAAACTGTTTTTCATCAATAAGAAAAATTGGAAAAAAATTGACGAACACTCCTGATTAAAACGAAAAAAGTCTCCTTTTACCACCTAGATTGATATTCCTATTGTTTCTGAATTTTTTCTGAAGTTTGAAGTCGTTAACAAATGACTTCACCAATTTTCACACTGTTTGCTGAAGGTCACATATTCACGGTTAAATTTTAAATTATTCTAATTTCAAAATCGATATAATAGAGCTTTCAAGAAAAATGAATTTGAATGAGTCAGAAACAAAAATGAATTTTGGAACAATTCAAAATATATGCGAGACTGAAAGACCTCCATCATGTGATGTTTTTCCCCCAGACGTGC</canonical>
            <polymorphic>TAGTTAGTAAAAAATAGTGAACTTGAAAAATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAAKAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTGAAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTACAGAATGTTGAAAATCCGAGTTTCAAAATTTCGGAATTTCTGTATGTTCCGATTTTTGAAACTGTTTTTCATCAATAAGAAAAATTGGAAAAAAATTGACGAACACTCCTGATTAAAACGAAAAAAGTCTCCTTTTACCACCTAGATTGATATTCCTATTGTTTCTGAATTTTTTCTGAAGTTTGAAGTCGTTAACAAATGACTTCACCAATTTTCACACTGTTTGCTGAAGGTCACATATTCACGGTTAAATTTTAAATTATTCTAATTTCAAAATCGATATAATAGAGCTTTCAAGAAAAATGAATTTGAATGAGTCAGAAACAAAAATGAATTTTGGAACAATTCAAAATATATGCGAGACTGAAAGACCTCCATCATGTGATGTTTTTCCCCCAGACGTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGATGATTGAAGCAGTGGA</pcr_primer_p1>
		<pcr_primer_p2>TTTCCAATTTTTCTTATTGATGA</pcr_primer_p2>
		<pcr_amplicon_size>422</pcr_amplicon_size>
		<canonical_amplicon>AAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTGAAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTACAGAATGTTGAAAATCCGAGTTTCAAAATTTCGGAATTTCTGTATGTTCCGATTTTTGAAACTGTTTTTCATCAATAAGAAAAATTGGAAA</canonical_amplicon>
		<polymorphic_amplicon>AAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAAKAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTGAAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTACAGAATGTTGAAAATCCGAGTTTCAAAATTTCGGAATTTCTGTATGTTCCGATTTTTGAAACTGTTTTTCATCAATAAGAAAAATTGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8205</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>63145</contig_pos>
        <strand>+</strand>
        <context>GTCTTCTATT[A/C]GAAGAAATAC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATT</left_flank>
        <right_flank>GAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTTTCAGCACATGCTGACTGCCATTCTCTGCGTTAGTTAGTAAAAAATAGTGAACTTGAAAAATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTGAAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTACAGAATGTTGAAAATCCGAGTTTCAAAATTTCGGAATTTCTGTATGTTCCGATTTTTGAAACTGTTTTTCATCAATAAGAAAAATTGGAAAAAAATTGACGAACACTCCTGATTAAAACGAAAAAAGTCTCCTTTTACCACCTAGATTGATATTCCTATTGTTTCTGAATTTTTTCTGAAGTTTGAAGTCGTTAACAAATGACTTCACCAATTTTCACACTGTTTGCTGAAGGTCACATATTCACGGTTAAATTTTAAATTATTCTAATTTCAAAATCGATATAATAGAGCTTTCAAGAAAAATGAATTTGAATGAGTCAGAAACAAAAATGAATTTTGGAACAATTCAAAATATATGCGAGACTGAAAG</canonical>
            <polymorphic>CAGTTTCAGCACATGCTGACTGCCATTCTCTGCGTTAGTTAGTAAAAAATAGTGAACTTGAAAAATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTMGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTGAAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTACAGAATGTTGAAAATCCGAGTTTCAAAATTTCGGAATTTCTGTATGTTCCGATTTTTGAAACTGTTTTTCATCAATAAGAAAAATTGGAAAAAAATTGACGAACACTCCTGATTAAAACGAAAAAAGTCTCCTTTTACCACCTAGATTGATATTCCTATTGTTTCTGAATTTTTTCTGAAGTTTGAAGTCGTTAACAAATGACTTCACCAATTTTCACACTGTTTGCTGAAGGTCACATATTCACGGTTAAATTTTAAATTATTCTAATTTCAAAATCGATATAATAGAGCTTTCAAGAAAAATGAATTTGAATGAGTCAGAAACAAAAATGAATTTTGGAACAATTCAAAATATATGCGAGACTGAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 408 92</canonical_bands>
                <polymorphic_bands>908 92</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGATGATTGAAGCAGTGGA</pcr_primer_p1>
		<pcr_primer_p2>CAAAATCAAACTTTATAAACAACAA</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>AAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTG</canonical_amplicon>
		<polymorphic_amplicon>AAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTMGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8206</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>66931</contig_pos>
        <strand>+</strand>
        <context>TACAGAATTT[C/T]GCCATCTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCTGAATTCTAAATGTCAGAAATTCTGAAAATTTGAAATACAGAATTT</left_flank>
        <right_flank>GCCATCTCAAATTTTCAAATATCAAAATCCATTTCAAAACTGACAACTAC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTTTCAGGGACATAAACTATTTCGAAATTCGGAACATCTGGGTTTCTGAATTTCCGATGATTTTAAAAATATAAAAAATCCATAGTTTCTGACATTTAGAACTTCCAAAATTCAGTTTCGTACTTTTTCATTCACTTTGAGATTTTTGACACGAGGTTTTGATTCACAGTTTCCCAAATTTCCGAACTATAATTCTGAACACCCGAAAACCGTAAAACCTATAACAAAAGGGCTACCACAGTGTATATCTCTATTATCTCTGTTTCCGTGTAAGATACCAAAATGTGTCAATTGATTAAATGTTTGTGATATTATGATATACACTTTATCAGTTAGCAGAAAATTCATATCATTGACAGTAACCGAGATAAATTAGGCCAACGTTAAAAGTTTAGAAGACTTCATTACAGGTTTTACGGCATCTACGCCTTTTTAAATTACTGAATTTTCTGAATTCTAAATGTCAGAAATTCTGAAAATTTGAAATACAGAATTTTGCCATCTCAAATTTTCAAATATCAAAATCCATTTCAAAACTGACAACTACAAGACTGTTAAAAACTAAATTTTGCTCTTCTTAAAACTGGTCATTTATCAACTTGAATTCTAGCACTAGTCATTCGCTGCAAATTTGAAAAACCCGGTTTTAAAATAGTTTGTAGAAAAATTGCAATACGCTGCCTTTCAATTAATAAATCTTACAATGAGGCGCCTACTAAAACGGTCAATTGGCGAACAAAATCTTTCTCACCTGCTGGTCTCCTCTAGCTCTTCTGAACTGATGAATCCATTCCATATTCTGCGGAAGGCCCAGTGCTCTTGGTGGGGGCGAATCCTCCTGAAAAAGTTACAGATGAAAATGGTCTCAATTTTTCACAATCTGAACTCACCCTAGCTCTCACGCGAGCCTGAGCGTGTGGCCGTGGCGGTAGCGGAGGCGGCGTCAGTGGCCGTGGCCGTGGTCCAGGACGTGGAGGTAGTGGTGGCGGGGTCGCTG</canonical>
            <polymorphic>CAATTTTCAGGGACATAAACTATTTCGAAATTCGGAACATCTGGGTTTCTGAATTTCCGATGATTTTAAAAATATAAAAAATCCATAGTTTCTGACATTTAGAACTTCCAAAATTCAGTTTCGTACTTTTTCATTCACTTTGAGATTTTTGACACGAGGTTTTGATTCACAGTTTCCCAAATTTCCGAACTATAATTCTGAACACCCGAAAACCGTAAAACCTATAACAAAAGGGCTACCACAGTGTATATCTCTATTATCTCTGTTTCCGTGTAAGATACCAAAATGTGTCAATTGATTAAATGTTTGTGATATTATGATATACACTTTATCAGTTAGCAGAAAATTCATATCATTGACAGTAACCGAGATAAATTAGGCCAACGTTAAAAGTTTAGAAGACTTCATTACAGGTTTTACGGCATCTACGCCTTTTTAAATTACTGAATTTTCTGAATTCTAAATGTCAGAAATTCTGAAAATTTGAAATACAGAATTTYGCCATCTCAAATTTTCAAATATCAAAATCCATTTCAAAACTGACAACTACAAGACTGTTAAAAACTAAATTTTGCTCTTCTTAAAACTGGTCATTTATCAACTTGAATTCTAGCACTAGTCATTCGCTGCAAATTTGAAAAACCCGGTTTTAAAATAGTTTGTAGAAAAATTGCAATACGCTGCCTTTCAATTAATAAATCTTACAATGAGGCGCCTACTAAAACGGTCAATTGGCGAACAAAATCTTTCTCACCTGCTGGTCTCCTCTAGCTCTTCTGAACTGATGAATCCATTCCATATTCTGCGGAAGGCCCAGTGCTCTTGGTGGGGGCGAATCCTCCTGAAAAAGTTACAGATGAAAATGGTCTCAATTTTTCACAATCTGAACTCACCCTAGCTCTCACGCGAGCCTGAGCGTGTGGCCGTGGCGGTAGCGGAGGCGGCGTCAGTGGCCGTGGCCGTGGTCCAGGACGTGGAGGTAGTGGTGGCGGGGTCGCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCTTTTTAAATTACTGAATTTTCT</pcr_primer_p1>
		<pcr_primer_p2>GCGTATTGCAATTTTTCTACA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCCTTTTTAAATTACTGAATTTTCTGAATTCTAAATGTCAGAAATTCTGAAAATTTGAAATACAGAATTTTGCCATCTCAAATTTTCAAATATCAAAATCCATTTCAAAACTGACAACTACAAGACTGTTAAAAACTAAATTTTGCTCTTCTTAAAACTGGTCATTTATCAACTTGAATTCTAGCACTAGTCATTCGCTGCAAATTTGAAAAACCCGGTTTTAAAATAGTTTGTAGAAAAATTGCAATACGC</canonical_amplicon>
		<polymorphic_amplicon>GCCTTTTTAAATTACTGAATTTTCTGAATTCTAAATGTCAGAAATTCTGAAAATTTGAAATACAGAATTTYGCCATCTCAAATTTTCAAATATCAAAATCCATTTCAAAACTGACAACTACAAGACTGTTAAAAACTAAATTTTGCTCTTCTTAAAACTGGTCATTTATCAACTTGAATTCTAGCACTAGTCATTCGCTGCAAATTTGAAAAACCCGGTTTTAAAATAGTTTGTAGAAAAATTGCAATACGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8207</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>67140</contig_pos>
        <strand>+</strand>
        <context>ATCTTACAAT[A/G]AGGCGCCTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGTAGAAAAATTGCAATACGCTGCCTTTCAATTAATAAATCTTACAAT</left_flank>
        <right_flank>AGGCGCCTACTAAAACGGTCAATTGGCGAACAAAATCTTTCTCACCTGCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACCGTAAAACCTATAACAAAAGGGCTACCACAGTGTATATCTCTATTATCTCTGTTTCCGTGTAAGATACCAAAATGTGTCAATTGATTAAATGTTTGTGATATTATGATATACACTTTATCAGTTAGCAGAAAATTCATATCATTGACAGTAACCGAGATAAATTAGGCCAACGTTAAAAGTTTAGAAGACTTCATTACAGGTTTTACGGCATCTACGCCTTTTTAAATTACTGAATTTTCTGAATTCTAAATGTCAGAAATTCTGAAAATTTGAAATACAGAATTTTGCCATCTCAAATTTTCAAATATCAAAATCCATTTCAAAACTGACAACTACAAGACTGTTAAAAACTAAATTTTGCTCTTCTTAAAACTGGTCATTTATCAACTTGAATTCTAGCACTAGTCATTCGCTGCAAATTTGAAAAACCCGGTTTTAAAATAGTTTGTAGAAAAATTGCAATACGCTGCCTTTCAATTAATAAATCTTACAATGAGGCGCCTACTAAAACGGTCAATTGGCGAACAAAATCTTTCTCACCTGCTGGTCTCCTCTAGCTCTTCTGAACTGATGAATCCATTCCATATTCTGCGGAAGGCCCAGTGCTCTTGGTGGGGGCGAATCCTCCTGAAAAAGTTACAGATGAAAATGGTCTCAATTTTTCACAATCTGAACTCACCCTAGCTCTCACGCGAGCCTGAGCGTGTGGCCGTGGCGGTAGCGGAGGCGGCGTCAGTGGCCGTGGCCGTGGTCCAGGACGTGGAGGTAGTGGTGGCGGGGTCGCTGGCCGTGGCTCTGGCTCCGGCTGCAGTTCCGGCTCTGGCGCTGCCGGTGGCGGGAAGTCTGGAACTCCTAGACCGGGAGCGGCATCAACCTTTGGCTCCTCTCTCAATGGTTCTGGGGTCATCTAAAATAATGAAATAAATTGGAAATGAACTGAAAATAAAGTTTTTAGGCTCTATCAGGTTTTCCAAAAACGGATTGAAAAGAAAAAC</canonical>
            <polymorphic>AAACCGTAAAACCTATAACAAAAGGGCTACCACAGTGTATATCTCTATTATCTCTGTTTCCGTGTAAGATACCAAAATGTGTCAATTGATTAAATGTTTGTGATATTATGATATACACTTTATCAGTTAGCAGAAAATTCATATCATTGACAGTAACCGAGATAAATTAGGCCAACGTTAAAAGTTTAGAAGACTTCATTACAGGTTTTACGGCATCTACGCCTTTTTAAATTACTGAATTTTCTGAATTCTAAATGTCAGAAATTCTGAAAATTTGAAATACAGAATTTTGCCATCTCAAATTTTCAAATATCAAAATCCATTTCAAAACTGACAACTACAAGACTGTTAAAAACTAAATTTTGCTCTTCTTAAAACTGGTCATTTATCAACTTGAATTCTAGCACTAGTCATTCGCTGCAAATTTGAAAAACCCGGTTTTAAAATAGTTTGTAGAAAAATTGCAATACGCTGCCTTTCAATTAATAAATCTTACAATRAGGCGCCTACTAAAACGGTCAATTGGCGAACAAAATCTTTCTCACCTGCTGGTCTCCTCTAGCTCTTCTGAACTGATGAATCCATTCCATATTCTGCGGAAGGCCCAGTGCTCTTGGTGGGGGCGAATCCTCCTGAAAAAGTTACAGATGAAAATGGTCTCAATTTTTCACAATCTGAACTCACCCTAGCTCTCACGCGAGCCTGAGCGTGTGGCCGTGGCGGTAGCGGAGGCGGCGTCAGTGGCCGTGGCCGTGGTCCAGGACGTGGAGGTAGTGGTGGCGGGGTCGCTGGCCGTGGCTCTGGCTCCGGCTGCAGTTCCGGCTCTGGCGCTGCCGGTGGCGGGAAGTCTGGAACTCCTAGACCGGGAGCGGCATCAACCTTTGGCTCCTCTCTCAATGGTTCTGGGGTCATCTAAAATAATGAAATAAATTGGAAATGAACTGAAAATAAAGTTTTTAGGCTCTATCAGGTTTTCCAAAAACGGATTGAAAAGAAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAACTGACAACTACAAGACTG</pcr_primer_p1>
		<pcr_primer_p2>AGTTCAGAAGAGCTAGAGGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAAACTGACAACTACAAGACTGTTAAAAACTAAATTTTGCTCTTCTTAAAACTGGTCATTTATCAACTTGAATTCTAGCACTAGTCATTCGCTGCAAATTTGAAAAACCCGGTTTTAAAATAGTTTGTAGAAAAATTGCAATACGCTGCCTTTCAATTAATAAATCTTACAATGAGGCGCCTACTAAAACGGTCAATTGGCGAACAAAATCTTTCTCACCTGCTGGTCTCCTCTAGCTCTTCTGAACT</canonical_amplicon>
		<polymorphic_amplicon>CAAAACTGACAACTACAAGACTGTTAAAAACTAAATTTTGCTCTTCTTAAAACTGGTCATTTATCAACTTGAATTCTAGCACTAGTCATTCGCTGCAAATTTGAAAAACCCGGTTTTAAAATAGTTTGTAGAAAAATTGCAATACGCTGCCTTTCAATTAATAAATCTTACAATRAGGCGCCTACTAAAACGGTCAATTGGCGAACAAAATCTTTCTCACCTGCTGGTCTCCTCTAGCTCTTCTGAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8208</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>67301</contig_pos>
        <strand>+</strand>
        <context>AAAATGGTCT[C/T]AATTTTTCAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCTTGGTGGGGGCGAATCCTCCTGAAAAAGTTACAGATGAAAATGGTCT</left_flank>
        <right_flank>AATTTTTCACAATCTGAACTCACCCTAGCTCTCACGCGAGCCTGAGCGTG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAATTAGGCCAACGTTAAAAGTTTAGAAGACTTCATTACAGGTTTTACGGCATCTACGCCTTTTTAAATTACTGAATTTTCTGAATTCTAAATGTCAGAAATTCTGAAAATTTGAAATACAGAATTTTGCCATCTCAAATTTTCAAATATCAAAATCCATTTCAAAACTGACAACTACAAGACTGTTAAAAACTAAATTTTGCTCTTCTTAAAACTGGTCATTTATCAACTTGAATTCTAGCACTAGTCATTCGCTGCAAATTTGAAAAACCCGGTTTTAAAATAGTTTGTAGAAAAATTGCAATACGCTGCCTTTCAATTAATAAATCTTACAATGAGGCGCCTACTAAAACGGTCAATTGGCGAACAAAATCTTTCTCACCTGCTGGTCTCCTCTAGCTCTTCTGAACTGATGAATCCATTCCATATTCTGCGGAAGGCCCAGTGCTCTTGGTGGGGGCGAATCCTCCTGAAAAAGTTACAGATGAAAATGGTCTCAATTTTTCACAATCTGAACTCACCCTAGCTCTCACGCGAGCCTGAGCGTGTGGCCGTGGCGGTAGCGGAGGCGGCGTCAGTGGCCGTGGCCGTGGTCCAGGACGTGGAGGTAGTGGTGGCGGGGTCGCTGGCCGTGGCTCTGGCTCCGGCTGCAGTTCCGGCTCTGGCGCTGCCGGTGGCGGGAAGTCTGGAACTCCTAGACCGGGAGCGGCATCAACCTTTGGCTCCTCTCTCAATGGTTCTGGGGTCATCTAAAATAATGAAATAAATTGGAAATGAACTGAAAATAAAGTTTTTAGGCTCTATCAGGTTTTCCAAAAACGGATTGAAAAGAAAAACTGAGAATTTTTGTTCGAAGCAATATCAATACTTATTCAATCATAAAATTTCTGTGAACGTAACAAACACACTACCTAACATATAAGAGCGGTATAAGAACAGATGAAAAGAGACAAGTCTGTTATCAAAATTGCATAGTCTCTTATTTCACCTACAGCTTT</canonical>
            <polymorphic>ATAAATTAGGCCAACGTTAAAAGTTTAGAAGACTTCATTACAGGTTTTACGGCATCTACGCCTTTTTAAATTACTGAATTTTCTGAATTCTAAATGTCAGAAATTCTGAAAATTTGAAATACAGAATTTTGCCATCTCAAATTTTCAAATATCAAAATCCATTTCAAAACTGACAACTACAAGACTGTTAAAAACTAAATTTTGCTCTTCTTAAAACTGGTCATTTATCAACTTGAATTCTAGCACTAGTCATTCGCTGCAAATTTGAAAAACCCGGTTTTAAAATAGTTTGTAGAAAAATTGCAATACGCTGCCTTTCAATTAATAAATCTTACAATGAGGCGCCTACTAAAACGGTCAATTGGCGAACAAAATCTTTCTCACCTGCTGGTCTCCTCTAGCTCTTCTGAACTGATGAATCCATTCCATATTCTGCGGAAGGCCCAGTGCTCTTGGTGGGGGCGAATCCTCCTGAAAAAGTTACAGATGAAAATGGTCTYAATTTTTCACAATCTGAACTCACCCTAGCTCTCACGCGAGCCTGAGCGTGTGGCCGTGGCGGTAGCGGAGGCGGCGTCAGTGGCCGTGGCCGTGGTCCAGGACGTGGAGGTAGTGGTGGCGGGGTCGCTGGCCGTGGCTCTGGCTCCGGCTGCAGTTCCGGCTCTGGCGCTGCCGGTGGCGGGAAGTCTGGAACTCCTAGACCGGGAGCGGCATCAACCTTTGGCTCCTCTCTCAATGGTTCTGGGGTCATCTAAAATAATGAAATAAATTGGAAATGAACTGAAAATAAAGTTTTTAGGCTCTATCAGGTTTTCCAAAAACGGATTGAAAAGAAAAACTGAGAATTTTTGTTCGAAGCAATATCAATACTTATTCAATCATAAAATTTCTGTGAACGTAACAAACACACTACCTAACATATAAGAGCGGTATAAGAACAGATGAAAAGAGACAAGTCTGTTATCAAAATTGCATAGTCTCTTATTTCACCTACAGCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGAATCCATTCCATATTCTG</pcr_primer_p1>
		<pcr_primer_p2>CAGAACCATTGAGAGAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>331</pcr_amplicon_size>
		<canonical_amplicon>GATGAATCCATTCCATATTCTGCGGAAGGCCCAGTGCTCTTGGTGGGGGCGAATCCTCCTGAAAAAGTTACAGATGAAAATGGTCTCAATTTTTCACAATCTGAACTCACCCTAGCTCTCACGCGAGCCTGAGCGTGTGGCCGTGGCGGTAGCGGAGGCGGCGTCAGTGGCCGTGGCCGTGGTCCAGGACGTGGAGGTAGTGGTGGCGGGGTCGCTGGCCGTGGCTCTGGCTCCGGCTGCAGTTCCGGCTCTGGCGCTGCCGGTGGCGGGAAGTCTGGAACTCCTAGACCGGGAGCGGCATCAACCTTTGGCTCCTCTCTCAATGGTTCTG</canonical_amplicon>
		<polymorphic_amplicon>GATGAATCCATTCCATATTCTGCGGAAGGCCCAGTGCTCTTGGTGGGGGCGAATCCTCCTGAAAAAGTTACAGATGAAAATGGTCTYAATTTTTCACAATCTGAACTCACCCTAGCTCTCACGCGAGCCTGAGCGTGTGGCCGTGGCGGTAGCGGAGGCGGCGTCAGTGGCCGTGGCCGTGGTCCAGGACGTGGAGGTAGTGGTGGCGGGGTCGCTGGCCGTGGCTCTGGCTCCGGCTGCAGTTCCGGCTCTGGCGCTGCCGGTGGCGGGAAGTCTGGAACTCCTAGACCGGGAGCGGCATCAACCTTTGGCTCCTCTCTCAATGGTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8209</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>67361</contig_pos>
        <strand></strand>
        <context>gtggccgtgg[C/T]ggtagcggag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATCTGAACTCACCCTAGCTCTCACGCGAGCCTGAGCGTGTGGCCGTGG</left_flank>
        <right_flank>GGTAGCGGAGGCGGCGTCAGTGGCCGTGGCCGTGGTCCAGGACGTGGAGG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTTTTAAATTACTGAATTTTCTGAATTCTAAATGTCAGAAATTCTGAAAATTTGAAATACAGAATTTTGCCATCTCAAATTTTCAAATATCAAAATCCATTTCAAAACTGACAACTACAAGACTGTTAAAAACTAAATTTTGCTCTTCTTAAAACTGGTCATTTATCAACTTGAATTCTAGCACTAGTCATTCGCTGCAAATTTGAAAAACCCGGTTTTAAAATAGTTTGTAGAAAAATTGCAATACGCTGCCTTTCAATTAATAAATCTTACAATGAGGCGCCTACTAAAACGGTCAATTGGCGAACAAAATCTTTCTCACCTGCTGGTCTCCTCTAGCTCTTCTGAACTGATGAATCCATTCCATATTCTGCGGAAGGCCCAGTGCTCTTGGTGGGGGCGAATCCTCCTGAAAAAGTTACAGATGAAAATGGTCTCAATTTTTCACAATCTGAACTCACCCTAGCTCTCACGCGAGCCTGAGCGTGTGGCCGTGGCGGTAGCGGAGGCGGCGTCAGTGGCCGTGGCCGTGGTCCAGGACGTGGAGGTAGTGGTGGCGGGGTCGCTGGCCGTGGCTCTGGCTCCGGCTGCAGTTCCGGCTCTGGCGCTGCCGGTGGCGGGAAGTCTGGAACTCCTAGACCGGGAGCGGCATCAACCTTTGGCTCCTCTCTCAATGGTTCTGGGGTCATCTAAAATAATGAAATAAATTGGAAATGAACTGAAAATAAAGTTTTTAGGCTCTATCAGGTTTTCCAAAAACGGATTGAAAAGAAAAACTGAGAATTTTTGTTCGAAGCAATATCAATACTTATTCAATCATAAAATTTCTGTGAACGTAACAAACACACTACCTAACATATAAGAGCGGTATAAGAACAGATGAAAAGAGACAAGTCTGTTATCAAAATTGCATAGTCTCTTATTTCACCTACAGCTTTGTATTCAGCTTTCGACGGACCACAATTTAAGGTAAGAGCAGTATTGGTTTTCTATTCTAC</canonical>
            <polymorphic>CCTTTTTAAATTACTGAATTTTCTGAATTCTAAATGTCAGAAATTCTGAAAATTTGAAATACAGAATTTTGCCATCTCAAATTTTCAAATATCAAAATCCATTTCAAAACTGACAACTACAAGACTGTTAAAAACTAAATTTTGCTCTTCTTAAAACTGGTCATTTATCAACTTGAATTCTAGCACTAGTCATTCGCTGCAAATTTGAAAAACCCGGTTTTAAAATAGTTTGTAGAAAAATTGCAATACGCTGCCTTTCAATTAATAAATCTTACAATGAGGCGCCTACTAAAACGGTCAATTGGCGAACAAAATCTTTCTCACCTGCTGGTCTCCTCTAGCTCTTCTGAACTGATGAATCCATTCCATATTCTGCGGAAGGCCCAGTGCTCTTGGTGGGGGCGAATCCTCCTGAAAAAGTTACAGATGAAAATGGTCTCAATTTTTCACAATCTGAACTCACCCTAGCTCTCACGCGAGCCTGAGCGTGTGGCCGTGGYGGTAGCGGAGGCGGCGTCAGTGGCCGTGGCCGTGGTCCAGGACGTGGAGGTAGTGGTGGCGGGGTCGCTGGCCGTGGCTCTGGCTCCGGCTGCAGTTCCGGCTCTGGCGCTGCCGGTGGCGGGAAGTCTGGAACTCCTAGACCGGGAGCGGCATCAACCTTTGGCTCCTCTCTCAATGGTTCTGGGGTCATCTAAAATAATGAAATAAATTGGAAATGAACTGAAAATAAAGTTTTTAGGCTCTATCAGGTTTTCCAAAAACGGATTGAAAAGAAAAACTGAGAATTTTTGTTCGAAGCAATATCAATACTTATTCAATCATAAAATTTCTGTGAACGTAACAAACACACTACCTAACATATAAGAGCGGTATAAGAACAGATGAAAAGAGACAAGTCTGTTATCAAAATTGCATAGTCTCTTATTTCACCTACAGCTTTGTATTCAGCTTTCGACGGACCACAATTTAAGGTAAGAGCAGTATTGGTTTTCTATTCTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>498 382 60 48 12</canonical_bands>
                <polymorphic_bands>510 382 60 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAATCTGAACTCACCCTAGC</pcr_primer_p1>
		<pcr_primer_p2>ATTATTTTAGATGACCCCAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ACAATCTGAACTCACCCTAGCTCTCACGCGAGCCTGAGCGTGTGGCCGTGGCGGTAGCGGAGGCGGCGTCAGTGGCCGTGGCCGTGGTCCAGGACGTGGAGGTAGTGGTGGCGGGGTCGCTGGCCGTGGCTCTGGCTCCGGCTGCAGTTCCGGCTCTGGCGCTGCCGGTGGCGGGAAGTCTGGAACTCCTAGACCGGGAGCGGCATCAACCTTTGGCTCCTCTCTCAATGGTTCTGGGGTCATCTAAAATAAT</canonical_amplicon>
		<polymorphic_amplicon>ACAATCTGAACTCACCCTAGCTCTCACGCGAGCCTGAGCGTGTGGCCGTGGYGGTAGCGGAGGCGGCGTCAGTGGCCGTGGCCGTGGTCCAGGACGTGGAGGTAGTGGTGGCGGGGTCGCTGGCCGTGGCTCTGGCTCCGGCTGCAGTTCCGGCTCTGGCGCTGCCGGTGGCGGGAAGTCTGGAACTCCTAGACCGGGAGCGGCATCAACCTTTGGCTCCTCTCTCAATGGTTCTGGGGTCATCTAAAATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8210</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>69094</contig_pos>
        <strand>+</strand>
        <context>AGCGTAGCCT[C/T]ACCGATATTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTCTCCATTTACAGAATCTGAAGATGGAGTGTAATCAAAAGCGTAGCCT</left_flank>
        <right_flank>ACCGATATTGAAATGATATGAAATAGGCATAATCGTTATTTTCTAGTTTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTTAGGGCATTTTCTCATACACAATTTCATTAAGGGGAGAGCAAAAACTGCAAAGAAAACCAGCGGCACCTCACGTTTTGTGTTGCGCAAGATAAGCGCGAATTGGCAAAAAATGTAGGAAAAGAAGAGAAAAATAAAGAAATGAGTGTTGACAACATTCAAAAAGGCCATCGTAGTACCAGACAGTGTCGTGCTCCGCCTCTTTCTCTTTTTCTTAGTGATGTTAGTCACACTGTTTGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTTTCTCTCTCTCTTTATTGGAATGGGGTACTGTAATTTTATGAGATGATGAATGACATAAAATTTGCACTTTTGAAACAATTTAATTTATACTTTTGGAACTTTCGAGAAATGCATTGTTCTCTTTTCTTCATTGAAATTATGTTTAAACAAGTGAAATTTCAGAAATCTCTTCTCCATTTACAGAATCTGAAGATGGAGTGTAATCAAAAGCGTAGCCTCACCGATATTGAAATGATATGAAATAGGCATAATCGTTATTTTCTAGTTTCTATTTTACAGACAGTTGTGCGCGCAGCGGTTGGCTACAACAACCGTAAAAAAGAGCTGATTGTGAGTTAAAGTTTCCAGAAAAAGAACACTCAAAAACAGGCTAAAACAAGCTGAAAATTTTTCTTTGATGTTTCGGTCCCCAGAAAAAATGATGGTATTTAGAAAACAGTTCAGTCCTTAAGACGATAATCCTAACTCGTTTCGTTTCAGTTACGATTTGTCTTTTTTTCATTCTTGAAAACTAATTGTTGAAATTTGCTGTAATGAACAACTTCAACATTAAAAAAGAGCCCAATACTTTGAAATAGTGCCCAAAACTACATTTACAAATTTTCTGATATTACAAAATTCTGACCCCTATGACTTTGTAAGGTTTTATTTGAAGCGCGGAAAAACAGAGGTTTTTTCGTAAGGGTACATGACACCTAGAAGCCGACCTGAACTTGGCC</canonical>
            <polymorphic>GGTTTAGGGCATTTTCTCATACACAATTTCATTAAGGGGAGAGCAAAAACTGCAAAGAAAACCAGCGGCACCTCACGTTTTGTGTTGCGCAAGATAAGCGCGAATTGGCAAAAAATGTAGGAAAAGAAGAGAAAAATAAAGAAATGAGTGTTGACAACATTCAAAAAGGCCATCGTAGTACCAGACAGTGTCGTGCTCCGCCTCTTTCTCTTTTTCTTAGTGATGTTAGTCACACTGTTTGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTTTCTCTCTCTCTTTATTGGAATGGGGTACTGTAATTTTATGAGATGATGAATGACATAAAATTTGCACTTTTGAAACAATTTAATTTATACTTTTGGAACTTTCGAGAAATGCATTGTTCTCTTTTCTTCATTGAAATTATGTTTAAACAAGTGAAATTTCAGAAATCTCTTCTCCATTTACAGAATCTGAAGATGGAGTGTAATCAAAAGCGTAGCCTYACCGATATTGAAATGATATGAAATAGGCATAATCGTTATTTTCTAGTTTCTATTTTACAGACAGTTGTGCGCGCAGCGGTTGGCTACAACAACCGTAAAAAAGAGCTGATTGTGAGTTAAAGTTTCCAGAAAAAGAACACTCAAAAACAGGCTAAAACAAGCTGAAAATTTTTCTTTGATGTTTCGGTCCCCAGAAAAAATGATGGTATTTAGAAAACAGTTCAGTCCTTAAGACGATAATCCTAACTCGTTTCGTTTCAGTTACGATTTGTCTTTTTTTCATTCTTGAAAACTAATTGTTGAAATTTGCTGTAATGAACAACTTCAACATTAAAAAAGAGCCCAATACTTTGAAATAGTGCCCAAAACTACATTTACAAATTTTCTGATATTACAAAATTCTGACCCCTATGACTTTGTAAGGTTTTATTTGAAGCGCGGAAAAACAGAGGTTTTTTCGTAAGGGTACATGACACCTAGAAGCCGACCTGAACTTGGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>222 114 113 87 68 66 47 47 45 40 27 25 25 23 20 10 9 5 5 2</canonical_bands>
                <polymorphic_bands>222 114 113 88 87 66 47 47 45 40 27 25 25 23 10 9 5 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAATGCATTGTTCTCTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CTTTTTCTGGAAACTTTAACTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAATGCATTGTTCTCTTTTCTTCATTGAAATTATGTTTAAACAAGTGAAATTTCAGAAATCTCTTCTCCATTTACAGAATCTGAAGATGGAGTGTAATCAAAAGCGTAGCCTCACCGATATTGAAATGATATGAAATAGGCATAATCGTTATTTTCTAGTTTCTATTTTACAGACAGTTGTGCGCGCAGCGGTTGGCTACAACAACCGTAAAAAAGAGCTGATTGTGAGTTAAAGTTTCCAGAAAAAG</canonical_amplicon>
		<polymorphic_amplicon>AGAAATGCATTGTTCTCTTTTCTTCATTGAAATTATGTTTAAACAAGTGAAATTTCAGAAATCTCTTCTCCATTTACAGAATCTGAAGATGGAGTGTAATCAAAAGCGTAGCCTYACCGATATTGAAATGATATGAAATAGGCATAATCGTTATTTTCTAGTTTCTATTTTACAGACAGTTGTGCGCGCAGCGGTTGGCTACAACAACCGTAAAAAAGAGCTGATTGTGAGTTAAAGTTTCCAGAAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8211</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>69031</contig_pos>
        <strand>+</strand>
        <context>AACAAGTGAA[A/G]TTTCAGAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAATGCATTGTTCTCTTTTCTTCATTGAAATTATGTTTAAACAAGTGAA</left_flank>
        <right_flank>TTTCAGAAATCTCTTCTCCATTTACAGAATCTGAAGATGGAGTGTAATCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTAAGAACTCCGTTGGAAGCGAAAATCCTAGGGCTTTCATTCCAAAATATTGTTTAATACAGGTTTAGGGCATTTTCTCATACACAATTTCATTAAGGGGAGAGCAAAAACTGCAAAGAAAACCAGCGGCACCTCACGTTTTGTGTTGCGCAAGATAAGCGCGAATTGGCAAAAAATGTAGGAAAAGAAGAGAAAAATAAAGAAATGAGTGTTGACAACATTCAAAAAGGCCATCGTAGTACCAGACAGTGTCGTGCTCCGCCTCTTTCTCTTTTTCTTAGTGATGTTAGTCACACTGTTTGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTTTCTCTCTCTCTTTATTGGAATGGGGTACTGTAATTTTATGAGATGATGAATGACATAAAATTTGCACTTTTGAAACAATTTAATTTATACTTTTGGAACTTTCGAGAAATGCATTGTTCTCTTTTCTTCATTGAAATTATGTTTAAACAAGTGAAATTTCAGAAATCTCTTCTCCATTTACAGAATCTGAAGATGGAGTGTAATCAAAAGCGTAGCCTCACCGATATTGAAATGATATGAAATAGGCATAATCGTTATTTTCTAGTTTCTATTTTACAGACAGTTGTGCGCGCAGCGGTTGGCTACAACAACCGTAAAAAAGAGCTGATTGTGAGTTAAAGTTTCCAGAAAAAGAACACTCAAAAACAGGCTAAAACAAGCTGAAAATTTTTCTTTGATGTTTCGGTCCCCAGAAAAAATGATGGTATTTAGAAAACAGTTCAGTCCTTAAGACGATAATCCTAACTCGTTTCGTTTCAGTTACGATTTGTCTTTTTTTCATTCTTGAAAACTAATTGTTGAAATTTGCTGTAATGAACAACTTCAACATTAAAAAAGAGCCCAATACTTTGAAATAGTGCCCAAAACTACATTTACAAATTTTCTGATATTACAAAATTCTGACCCCTATGACTTTGTAAGGTTTTATTTGAAGC</canonical>
            <polymorphic>CAGTAAGAACTCCGTTGGAAGCGAAAATCCTAGGGCTTTCATTCCAAAATATTGTTTAATACAGGTTTAGGGCATTTTCTCATACACAATTTCATTAAGGGGAGAGCAAAAACTGCAAAGAAAACCAGCGGCACCTCACGTTTTGTGTTGCGCAAGATAAGCGCGAATTGGCAAAAAATGTAGGAAAAGAAGAGAAAAATAAAGAAATGAGTGTTGACAACATTCAAAAAGGCCATCGTAGTACCAGACAGTGTCGTGCTCCGCCTCTTTCTCTTTTTCTTAGTGATGTTAGTCACACTGTTTGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTTTCTCTCTCTCTTTATTGGAATGGGGTACTGTAATTTTATGAGATGATGAATGACATAAAATTTGCACTTTTGAAACAATTTAATTTATACTTTTGGAACTTTCGAGAAATGCATTGTTCTCTTTTCTTCATTGAAATTATGTTTAAACAAGTGAARTTTCAGAAATCTCTTCTCCATTTACAGAATCTGAAGATGGAGTGTAATCAAAAGCGTAGCCTCACCGATATTGAAATGATATGAAATAGGCATAATCGTTATTTTCTAGTTTCTATTTTACAGACAGTTGTGCGCGCAGCGGTTGGCTACAACAACCGTAAAAAAGAGCTGATTGTGAGTTAAAGTTTCCAGAAAAAGAACACTCAAAAACAGGCTAAAACAAGCTGAAAATTTTTCTTTGATGTTTCGGTCCCCAGAAAAAATGATGGTATTTAGAAAACAGTTCAGTCCTTAAGACGATAATCCTAACTCGTTTCGTTTCAGTTACGATTTGTCTTTTTTTCATTCTTGAAAACTAATTGTTGAAATTTGCTGTAATGAACAACTTCAACATTAAAAAAGAGCCCAATACTTTGAAATAGTGCCCAAAACTACATTTACAAATTTTCTGATATTACAAAATTCTGACCCCTATGACTTTGTAAGGTTTTATTTGAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>402 231 137 96 76 40 18</canonical_bands>
                <polymorphic_bands>402 327 137 76 40 18</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>231 210 128 87 78 76 53 40 27 20 18 18 9 5</canonical_bands>
                <polymorphic_bands>251 210 128 87 78 76 53 40 27 18 18 9 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAATGCATTGTTCTCTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CTTTTTCTGGAAACTTTAACTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAATGCATTGTTCTCTTTTCTTCATTGAAATTATGTTTAAACAAGTGAAATTTCAGAAATCTCTTCTCCATTTACAGAATCTGAAGATGGAGTGTAATCAAAAGCGTAGCCTCACCGATATTGAAATGATATGAAATAGGCATAATCGTTATTTTCTAGTTTCTATTTTACAGACAGTTGTGCGCGCAGCGGTTGGCTACAACAACCGTAAAAAAGAGCTGATTGTGAGTTAAAGTTTCCAGAAAAAG</canonical_amplicon>
		<polymorphic_amplicon>AGAAATGCATTGTTCTCTTTTCTTCATTGAAATTATGTTTAAACAAGTGAARTTTCAGAAATCTCTTCTCCATTTACAGAATCTGAAGATGGAGTGTAATCAAAAGCGTAGCCTCACCGATATTGAAATGATATGAAATAGGCATAATCGTTATTTTCTAGTTTCTATTTTACAGACAGTTGTGCGCGCAGCGGTTGGCTACAACAACCGTAAAAAAGAGCTGATTGTGAGTTAAAGTTTCCAGAAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8212</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>72204</contig_pos>
        <strand>+</strand>
        <context>CTCCTTTTTT[A/G]AACTAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGCGACAAAAGTGTATTTTGGATATACATCTCTATCCGGCTCCTTTTTT</left_flank>
        <right_flank>AACTAAAAATCAATGAAATAGAGCTTTCCAGAAAGCAAAAATTTGAATGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAGCTTCAAAGAATTTCATAATTTCTCCATTTCTCAAGATAAGATGCATACCTTCAAACCTGTAAAAGAAGGGCTTCTTATTTTGTTTTAAACGTTGCCTATTTATCTCGGTTCCTGTGAGAAATTTAAAAAATTGTCAACTGATAAAATATTTATCATAATATCAAAAATATTTTATCAGTTGACAGATTCTTGATATCTCTCATAGGAGCAGGTATAGGTGAAACTTGACAATTCGGGGGGTTTTCTAAAGACAGAATCAAGTCTAGCTTATGAAGAAATATCGTTTTTTTTCCCACATTTTCGCTTCAGTTTGTGAAATAATAAGTTTAAAACTTTCTATTCACCAATTTCAGTATTTTCTGGATGTTATTAAATCTTTGCAATGCCCTCAAAATATCCTTAAATAAGAAGATATCGTTAAGTGATCCTTTAAATACCAACTCTATGCGACAAAAGTGTATTTTGGATATACATCTCTATCCGGCTCCTTTTTTAAACTAAAAATCAATGAAATAGAGCTTTCCAGAAAGCAAAAATTTGAATGAGTCATAGAAAAAAAAACAAATTTTGGAACCTTTCAAAATCTATGCGAGAGAGAGAGAGAGAGAGAGGAGAGACAGTTCCATGTCTTAGTCACTAAAACAGACACTTGTTTAGCTTTTCGCAAAAATATCCTCATCCCTGTCCAGCTCGTTGGACTTTTTTTGCCAAATTATCAATTTTAACTTTTCGGCTAACAACGTTTAGTCCTTCCCACGCAAGAATTTTCGTGTAATTTTGCAGTATGTTCTGTAAGTGTCGTCATTGAGCGGCCTCTTCAATACTCTATGCGTCGGAGGCATACCTTAACTTATTTTTTATAACATTGAAAACAGCGAAATACTGTTTTCTAGAACATTTATTCGAATACGCCAAAAAAGACGAAAAAAACAAATGCTGGAACCTAATAGAGCGTCACACCTACACTGGCACTTTGAGCTCAATTATCTCTGAGT</canonical>
            <polymorphic>AACAGCTTCAAAGAATTTCATAATTTCTCCATTTCTCAAGATAAGATGCATACCTTCAAACCTGTAAAAGAAGGGCTTCTTATTTTGTTTTAAACGTTGCCTATTTATCTCGGTTCCTGTGAGAAATTTAAAAAATTGTCAACTGATAAAATATTTATCATAATATCAAAAATATTTTATCAGTTGACAGATTCTTGATATCTCTCATAGGAGCAGGTATAGGTGAAACTTGACAATTCGGGGGGTTTTCTAAAGACAGAATCAAGTCTAGCTTATGAAGAAATATCGTTTTTTTTCCCACATTTTCGCTTCAGTTTGTGAAATAATAAGTTTAAAACTTTCTATTCACCAATTTCAGTATTTTCTGGATGTTATTAAATCTTTGCAATGCCCTCAAAATATCCTTAAATAAGAAGATATCGTTAAGTGATCCTTTAAATACCAACTCTATGCGACAAAAGTGTATTTTGGATATACATCTCTATCCGGCTCCTTTTTTRAACTAAAAATCAATGAAATAGAGCTTTCCAGAAAGCAAAAATTTGAATGAGTCATAGAAAAAAAAACAAATTTTGGAACCTTTCAAAATCTATGCGAGAGAGAGAGAGAGAGAGAGGAGAGACAGTTCCATGTCTTAGTCACTAAAACAGACACTTGTTTAGCTTTTCGCAAAAATATCCTCATCCCTGTCCAGCTCGTTGGACTTTTTTTGCCAAATTATCAATTTTAACTTTTCGGCTAACAACGTTTAGTCCTTCCCACGCAAGAATTTTCGTGTAATTTTGCAGTATGTTCTGTAAGTGTCGTCATTGAGCGGCCTCTTCAATACTCTATGCGTCGGAGGCATACCTTAACTTATTTTTTATAACATTGAAAACAGCGAAATACTGTTTTCTAGAACATTTATTCGAATACGCCAAAAAAGACGAAAAAAACAAATGCTGGAACCTAATAGAGCGTCACACCTACACTGGCACTTTGAGCTCAATTATCTCTGAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 204 103 91 63 38</canonical_bands>
                <polymorphic_bands>564 204 103 91 38</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>229 204 149 124 90 63 43 38 30 18 12</canonical_bands>
                <polymorphic_bands>292 204 149 124 90 43 38 30 18 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTTTAAATACCAACTCTATGC</pcr_primer_p1>
		<pcr_primer_p2>GATATTTTTGCGAAAAGCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCTTTAAATACCAACTCTATGCGACAAAAGTGTATTTTGGATATACATCTCTATCCGGCTCCTTTTTTAAACTAAAAATCAATGAAATAGAGCTTTCCAGAAAGCAAAAATTTGAATGAGTCATAGAAAAAAAAACAAATTTTGGAACCTTTCAAAATCTATGCGAGAGAGAGAGAGAGAGAGAGGAGAGACAGTTCCATGTCTTAGTCACTAAAACAGACACTTGTTTAGCTTTTCGCAAAAATATC</canonical_amplicon>
		<polymorphic_amplicon>TCCTTTAAATACCAACTCTATGCGACAAAAGTGTATTTTGGATATACATCTCTATCCGGCTCCTTTTTTRAACTAAAAATCAATGAAATAGAGCTTTCCAGAAAGCAAAAATTTGAATGAGTCATAGAAAAAAAAACAAATTTTGGAACCTTTCAAAATCTATGCGAGAGAGAGAGAGAGAGAGAGGAGAGACAGTTCCATGTCTTAGTCACTAAAACAGACACTTGTTTAGCTTTTCGCAAAAATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8213</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>72000</contig_pos>
        <strand></strand>
        <context>TCGTTTTTTT[T/C]CCCACATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTCTAAAGACAGAATCAAGTCTAGCTTATGAAGAAATATCGTTTTTTT</left_flank>
        <right_flank>CCCACATTTTCGCTTCAGTTTGTGAAATAATAAGTTTAAAACTTTCTATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAGTCATAATGGGAAAAACAAATTCTGGGACATTTCAAAATCTATGCGAGAGACTGACAGACCTCTGTCATGTGTTTTCGTTAAACTCAGTGCGGCCCGATTGATCCACTTTTGTTGAACAGTCCCATATAATTCATTTTTTACAAAAAAAAAACAAAGAAAATTGGTTTTTCTAGTTTTTCTAGAAAATTAAATGGTTAAAAACAGCTTCAAAGAATTTCATAATTTCTCCATTTCTCAAGATAAGATGCATACCTTCAAACCTGTAAAAGAAGGGCTTCTTATTTTGTTTTAAACGTTGCCTATTTATCTCGGTTCCTGTGAGAAATTTAAAAAATTGTCAACTGATAAAATATTTATCATAATATCAAAAATATTTTATCAGTTGACAGATTCTTGATATCTCTCATAGGAGCAGGTATAGGTGAAACTTGACAATTCGGGGGGTTTTCTAAAGACAGAATCAAGTCTAGCTTATGAAGAAATATCGTTTTTTTTCCCACATTTTCGCTTCAGTTTGTGAAATAATAAGTTTAAAACTTTCTATTCACCAATTTCAGTATTTTCTGGATGTTATTAAATCTTTGCAATGCCCTCAAAATATCCTTAAATAAGAAGATATCGTTAAGTGATCCTTTAAATACCAACTCTATGCGACAAAAGTGTATTTTGGATATACATCTCTATCCGGCTCCTTTTTTAAACTAAAAATCAATGAAATAGAGCTTTCCAGAAAGCAAAAATTTGAATGAGTCATAGAAAAAAAAACAAATTTTGGAACCTTTCAAAATCTATGCGAGAGAGAGAGAGAGAGAGAGGAGAGACAGTTCCATGTCTTAGTCACTAAAACAGACACTTGTTTAGCTTTTCGCAAAAATATCCTCATCCCTGTCCAGCTCGTTGGACTTTTTTTGCCAAATTATCAATTTTAACTTTTCGGCTAACAACGTTTAGTCCTTCCCACGCAAGAATTTTCGTGTAATTTTGCAGTATGTTCT</canonical>
            <polymorphic>ATGAGTCATAATGGGAAAAACAAATTCTGGGACATTTCAAAATCTATGCGAGAGACTGACAGACCTCTGTCATGTGTTTTCGTTAAACTCAGTGCGGCCCGATTGATCCACTTTTGTTGAACAGTCCCATATAATTCATTTTTTACAAAAAAAAAACAAAGAAAATTGGTTTTTCTAGTTTTTCTAGAAAATTAAATGGTTAAAAACAGCTTCAAAGAATTTCATAATTTCTCCATTTCTCAAGATAAGATGCATACCTTCAAACCTGTAAAAGAAGGGCTTCTTATTTTGTTTTAAACGTTGCCTATTTATCTCGGTTCCTGTGAGAAATTTAAAAAATTGTCAACTGATAAAATATTTATCATAATATCAAAAATATTTTATCAGTTGACAGATTCTTGATATCTCTCATAGGAGCAGGTATAGGTGAAACTTGACAATTCGGGGGGTTTTCTAAAGACAGAATCAAGTCTAGCTTATGAAGAAATATCGTTTTTTTYCCCACATTTTCGCTTCAGTTTGTGAAATAATAAGTTTAAAACTTTCTATTCACCAATTTCAGTATTTTCTGGATGTTATTAAATCTTTGCAATGCCCTCAAAATATCCTTAAATAAGAAGATATCGTTAAGTGATCCTTTAAATACCAACTCTATGCGACAAAAGTGTATTTTGGATATACATCTCTATCCGGCTCCTTTTTTAAACTAAAAATCAATGAAATAGAGCTTTCCAGAAAGCAAAAATTTGAATGAGTCATAGAAAAAAAAACAAATTTTGGAACCTTTCAAAATCTATGCGAGAGAGAGAGAGAGAGAGAGGAGAGACAGTTCCATGTCTTAGTCACTAAAACAGACACTTGTTTAGCTTTTCGCAAAAATATCCTCATCCCTGTCCAGCTCGTTGGACTTTTTTTGCCAAATTATCAATTTTAACTTTTCGGCTAACAACGTTTAGTCCTTCCCACGCAAGAATTTTCGTGTAATTTTGCAGTATGTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCCATTTCTCAAGATAAGA</pcr_primer_p1>
		<pcr_primer_p2>CTGAAATTGGTGAATAGAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>335</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCCATTTCTCAAGATAAGATGCATACCTTCAAACCTGTAAAAGAAGGGCTTCTTATTTTGTTTTAAACGTTGCCTATTTATCTCGGTTCCTGTGAGAAATTTAAAAAATTGTCAACTGATAAAATATTTATCATAATATCAAAAATATTTTATCAGTTGACAGATTCTTGATATCTCTCATAGGAGCAGGTATAGGTGAAACTTGACAATTCGGGGGGTTTTCTAAAGACAGAATCAAGTCTAGCTTATGAAGAAATATCGTTTTTTTTCCCACATTTTCGCTTCAGTTTGTGAAATAATAAGTTTAAAACTTTCTATTCACCAATTTCAG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCCATTTCTCAAGATAAGATGCATACCTTCAAACCTGTAAAAGAAGGGCTTCTTATTTTGTTTTAAACGTTGCCTATTTATCTCGGTTCCTGTGAGAAATTTAAAAAATTGTCAACTGATAAAATATTTATCATAATATCAAAAATATTTTATCAGTTGACAGATTCTTGATATCTCTCATAGGAGCAGGTATAGGTGAAACTTGACAATTCGGGGGGTTTTCTAAAGACAGAATCAAGTCTAGCTTATGAAGAAATATCGTTTTTTTYCCCACATTTTCGCTTCAGTTTGTGAAATAATAAGTTTAAAACTTTCTATTCACCAATTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8214</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>94493</contig_pos>
        <strand>+</strand>
        <context>GTACTCTGGA[A/T]ATTTATCCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACTCAATGGACGTTGACTCTTCATCGTTTTCCTGTGCCTGTACTCTGGA</left_flank>
        <right_flank>ATTTATCCGAGAAGATAGCAAGAAAAGTTTGTTGAGTGGTACTGTAAATT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCAAGGCTGCTACATTTATTATTATTTTCAGAGAAGAAGTGAGTACTGGGTCAGCGTCCCTTCAACATCGTTGTTCACCGGAAAGTTGAAATCCATGCAGTTTCAATTTTGAAGGCCATCTGAAGGCAACTTGGCATAATGATGATCAAACTTCTAGTCGTTCTGAACATGTGTTTGCAAGCAAACGAGAACTGCAATAAACTGTAGCTAATAATAGCTGGGTAGATCTCGAAATCAATTAGAAGACAAGACAATCGATGTAACGAGGTGCCTCTCGTCACGATTATGCTGATCAAATTTAAAGTTATAGCGGATTTTTGTTAGCAAGCCGAACAGGGATAAGAAGAAATGCGATGAATACTATCCGAAACATTATGACGACACGACAGAAGACATTCCTCTTTTGACTGAAACGTTGAAAAAATATCACACTTCATCCTGGACGCTGACTCAATGGACGTTGACTCTTCATCGTTTTCCTGTGCCTGTACTCTGGATATTTATCCGAGAAGATAGCAAGAAAAGTTTGTTGAGTGGTACTGTAAATTCGAACAACCACAGTCAGAACAATTGGTTTTTGTATGTAAGTTTTTGATTTAAGCTGCCAGTATTTTTCAATAATCTTCAAAGAAAACATGAGTACTGGGCCAGAGACCATTCAACATCGCCGTAAATCTAGGAATTTCGATGCAGTTTTAAATTCGAAGACAACCTGTAAACTACAATCATTGAGACTACGTTGATCATGCATCTACTCGTACTGGATATCTGCTTACAAGCTGACAAAGAGAATAAAAAAAAGTCCGGCTGTTAGTCGCGATGATCCCAATCGTTTAATGAAATCTGGAAAGATCTTGAAATTTAGCAGAAGACGATTGAAGTGAAGAGATGCATTAATGTTTCAAAACATCACCGGGAAGTAATCTACTGAACGGGACTGCGAAATCGAACAACCACAGTCATTACCGTTGATTGAGTATGTAAGTTTTTAATTCAGC</canonical>
            <polymorphic>ATTCAAGGCTGCTACATTTATTATTATTTTCAGAGAAGAAGTGAGTACTGGGTCAGCGTCCCTTCAACATCGTTGTTCACCGGAAAGTTGAAATCCATGCAGTTTCAATTTTGAAGGCCATCTGAAGGCAACTTGGCATAATGATGATCAAACTTCTAGTCGTTCTGAACATGTGTTTGCAAGCAAACGAGAACTGCAATAAACTGTAGCTAATAATAGCTGGGTAGATCTCGAAATCAATTAGAAGACAAGACAATCGATGTAACGAGGTGCCTCTCGTCACGATTATGCTGATCAAATTTAAAGTTATAGCGGATTTTTGTTAGCAAGCCGAACAGGGATAAGAAGAAATGCGATGAATACTATCCGAAACATTATGACGACACGACAGAAGACATTCCTCTTTTGACTGAAACGTTGAAAAAATATCACACTTCATCCTGGACGCTGACTCAATGGACGTTGACTCTTCATCGTTTTCCTGTGCCTGTACTCTGGAWATTTATCCGAGAAGATAGCAAGAAAAGTTTGTTGAGTGGTACTGTAAATTCGAACAACCACAGTCAGAACAATTGGTTTTTGTATGTAAGTTTTTGATTTAAGCTGCCAGTATTTTTCAATAATCTTCAAAGAAAACATGAGTACTGGGCCAGAGACCATTCAACATCGCCGTAAATCTAGGAATTTCGATGCAGTTTTAAATTCGAAGACAACCTGTAAACTACAATCATTGAGACTACGTTGATCATGCATCTACTCGTACTGGATATCTGCTTACAAGCTGACAAAGAGAATAAAAAAAAGTCCGGCTGTTAGTCGCGATGATCCCAATCGTTTAATGAAATCTGGAAAGATCTTGAAATTTAGCAGAAGACGATTGAAGTGAAGAGATGCATTAATGTTTCAAAACATCACCGGGAAGTAATCTACTGAACGGGACTGCGAAATCGAACAACCACAGTCATTACCGTTGATTGAGTATGTAAGTTTTTAATTCAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATNNNNATC</site>
                <isoschizomers>
                    <enzyme>BsaBI</enzyme>
                    <enzyme>Bse8I</enzyme>
                    <enzyme>BseJI</enzyme>
                    <enzyme>BsiBI</enzyme>
                    <enzyme>BsrBRI</enzyme>
                    <enzyme>MamI</enzyme>
                </isoschizomers>
                <canonical_bands>502 326 172</canonical_bands>
                <polymorphic_bands>828 172</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATAAGAAGAAATGCGATGAATA</pcr_primer_p1>
		<pcr_primer_p2>ATACAAAAACCAATTGTTCTGAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GATAAGAAGAAATGCGATGAATACTATCCGAAACATTATGACGACACGACAGAAGACATTCCTCTTTTGACTGAAACGTTGAAAAAATATCACACTTCATCCTGGACGCTGACTCAATGGACGTTGACTCTTCATCGTTTTCCTGTGCCTGTACTCTGGATATTTATCCGAGAAGATAGCAAGAAAAGTTTGTTGAGTGGTACTGTAAATTCGAACAACCACAGTCAGAACAATTGGTTTTTGTAT</canonical_amplicon>
		<polymorphic_amplicon>GATAAGAAGAAATGCGATGAATACTATCCGAAACATTATGACGACACGACAGAAGACATTCCTCTTTTGACTGAAACGTTGAAAAAATATCACACTTCATCCTGGACGCTGACTCAATGGACGTTGACTCTTCATCGTTTTCCTGTGCCTGTACTCTGGAWATTTATCCGAGAAGATAGCAAGAAAAGTTTGTTGAGTGGTACTGTAAATTCGAACAACCACAGTCAGAACAATTGGTTTTTGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8215</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>94593</contig_pos>
        <strand>+</strand>
        <context>GTTTTTGATT[C/T]AAGCTGCCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGAACAACCACAGTCAGAACAATTGGTTTTTGTATGTAAGTTTTTGATT</left_flank>
        <right_flank>AAGCTGCCAGTATTTTTCAATAATCTTCAAAGAAAACATGAGTACTGGGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTTCAATTTTGAAGGCCATCTGAAGGCAACTTGGCATAATGATGATCAAACTTCTAGTCGTTCTGAACATGTGTTTGCAAGCAAACGAGAACTGCAATAAACTGTAGCTAATAATAGCTGGGTAGATCTCGAAATCAATTAGAAGACAAGACAATCGATGTAACGAGGTGCCTCTCGTCACGATTATGCTGATCAAATTTAAAGTTATAGCGGATTTTTGTTAGCAAGCCGAACAGGGATAAGAAGAAATGCGATGAATACTATCCGAAACATTATGACGACACGACAGAAGACATTCCTCTTTTGACTGAAACGTTGAAAAAATATCACACTTCATCCTGGACGCTGACTCAATGGACGTTGACTCTTCATCGTTTTCCTGTGCCTGTACTCTGGATATTTATCCGAGAAGATAGCAAGAAAAGTTTGTTGAGTGGTACTGTAAATTCGAACAACCACAGTCAGAACAATTGGTTTTTGTATGTAAGTTTTTGATTTAAGCTGCCAGTATTTTTCAATAATCTTCAAAGAAAACATGAGTACTGGGCCAGAGACCATTCAACATCGCCGTAAATCTAGGAATTTCGATGCAGTTTTAAATTCGAAGACAACCTGTAAACTACAATCATTGAGACTACGTTGATCATGCATCTACTCGTACTGGATATCTGCTTACAAGCTGACAAAGAGAATAAAAAAAAGTCCGGCTGTTAGTCGCGATGATCCCAATCGTTTAATGAAATCTGGAAAGATCTTGAAATTTAGCAGAAGACGATTGAAGTGAAGAGATGCATTAATGTTTCAAAACATCACCGGGAAGTAATCTACTGAACGGGACTGCGAAATCGAACAACCACAGTCATTACCGTTGATTGAGTATGTAAGTTTTTAATTCAGCGCGGCTACATTTATTATATATTTCAGAGAAGTAGTGAGTATTGGGTCAGCATCCCTTCAACATCGTTGTTCACCGGGAAATTGAAATCCATGCAATTACA</canonical>
            <polymorphic>AGTTTCAATTTTGAAGGCCATCTGAAGGCAACTTGGCATAATGATGATCAAACTTCTAGTCGTTCTGAACATGTGTTTGCAAGCAAACGAGAACTGCAATAAACTGTAGCTAATAATAGCTGGGTAGATCTCGAAATCAATTAGAAGACAAGACAATCGATGTAACGAGGTGCCTCTCGTCACGATTATGCTGATCAAATTTAAAGTTATAGCGGATTTTTGTTAGCAAGCCGAACAGGGATAAGAAGAAATGCGATGAATACTATCCGAAACATTATGACGACACGACAGAAGACATTCCTCTTTTGACTGAAACGTTGAAAAAATATCACACTTCATCCTGGACGCTGACTCAATGGACGTTGACTCTTCATCGTTTTCCTGTGCCTGTACTCTGGATATTTATCCGAGAAGATAGCAAGAAAAGTTTGTTGAGTGGTACTGTAAATTCGAACAACCACAGTCAGAACAATTGGTTTTTGTATGTAAGTTTTTGATTYAAGCTGCCAGTATTTTTCAATAATCTTCAAAGAAAACATGAGTACTGGGCCAGAGACCATTCAACATCGCCGTAAATCTAGGAATTTCGATGCAGTTTTAAATTCGAAGACAACCTGTAAACTACAATCATTGAGACTACGTTGATCATGCATCTACTCGTACTGGATATCTGCTTACAAGCTGACAAAGAGAATAAAAAAAAGTCCGGCTGTTAGTCGCGATGATCCCAATCGTTTAATGAAATCTGGAAAGATCTTGAAATTTAGCAGAAGACGATTGAAGTGAAGAGATGCATTAATGTTTCAAAACATCACCGGGAAGTAATCTACTGAACGGGACTGCGAAATCGAACAACCACAGTCATTACCGTTGATTGAGTATGTAAGTTTTTAATTCAGCGCGGCTACATTTATTATATATTTCAGAGAAGTAGTGAGTATTGGGTCAGCATCCCTTCAACATCGTTGTTCACCGGGAAATTGAAATCCATGCAATTACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>298 201 138 109 99 95 60</canonical_bands>
                <polymorphic_bands>397 201 138 109 95 60</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAAGATAGCAAGAAAAGTTTG</pcr_primer_p1>
		<pcr_primer_p2>AGTAGATGCATGATCAACGTAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGAAGATAGCAAGAAAAGTTTGTTGAGTGGTACTGTAAATTCGAACAACCACAGTCAGAACAATTGGTTTTTGTATGTAAGTTTTTGATTTAAGCTGCCAGTATTTTTCAATAATCTTCAAAGAAAACATGAGTACTGGGCCAGAGACCATTCAACATCGCCGTAAATCTAGGAATTTCGATGCAGTTTTAAATTCGAAGACAACCTGTAAACTACAATCATTGAGACTACGTTGATCATGCATCTACT</canonical_amplicon>
		<polymorphic_amplicon>GAGAAGATAGCAAGAAAAGTTTGTTGAGTGGTACTGTAAATTCGAACAACCACAGTCAGAACAATTGGTTTTTGTATGTAAGTTTTTGATTYAAGCTGCCAGTATTTTTCAATAATCTTCAAAGAAAACATGAGTACTGGGCCAGAGACCATTCAACATCGCCGTAAATCTAGGAATTTCGATGCAGTTTTAAATTCGAAGACAACCTGTAAACTACAATCATTGAGACTACGTTGATCATGCATCTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8216</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>94623</contig_pos>
        <strand>+</strand>
        <context>ATAATCTTCA[A/G]AGAAAACATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGTATGTAAGTTTTTGATTTAAGCTGCCAGTATTTTTCAATAATCTTCA</left_flank>
        <right_flank>AGAAAACATGAGTACTGGGCCAGAGACCATTCAACATCGCCGTAAATCTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTGGCATAATGATGATCAAACTTCTAGTCGTTCTGAACATGTGTTTGCAAGCAAACGAGAACTGCAATAAACTGTAGCTAATAATAGCTGGGTAGATCTCGAAATCAATTAGAAGACAAGACAATCGATGTAACGAGGTGCCTCTCGTCACGATTATGCTGATCAAATTTAAAGTTATAGCGGATTTTTGTTAGCAAGCCGAACAGGGATAAGAAGAAATGCGATGAATACTATCCGAAACATTATGACGACACGACAGAAGACATTCCTCTTTTGACTGAAACGTTGAAAAAATATCACACTTCATCCTGGACGCTGACTCAATGGACGTTGACTCTTCATCGTTTTCCTGTGCCTGTACTCTGGATATTTATCCGAGAAGATAGCAAGAAAAGTTTGTTGAGTGGTACTGTAAATTCGAACAACCACAGTCAGAACAATTGGTTTTTGTATGTAAGTTTTTGATTTAAGCTGCCAGTATTTTTCAATAATCTTCAAAGAAAACATGAGTACTGGGCCAGAGACCATTCAACATCGCCGTAAATCTAGGAATTTCGATGCAGTTTTAAATTCGAAGACAACCTGTAAACTACAATCATTGAGACTACGTTGATCATGCATCTACTCGTACTGGATATCTGCTTACAAGCTGACAAAGAGAATAAAAAAAAGTCCGGCTGTTAGTCGCGATGATCCCAATCGTTTAATGAAATCTGGAAAGATCTTGAAATTTAGCAGAAGACGATTGAAGTGAAGAGATGCATTAATGTTTCAAAACATCACCGGGAAGTAATCTACTGAACGGGACTGCGAAATCGAACAACCACAGTCATTACCGTTGATTGAGTATGTAAGTTTTTAATTCAGCGCGGCTACATTTATTATATATTTCAGAGAAGTAGTGAGTATTGGGTCAGCATCCCTTCAACATCGTTGTTCACCGGGAAATTGAAATCCATGCAATTACAAGTTTGAAGACCATCTGAAGCCAACTTGGC</canonical>
            <polymorphic>ACTTGGCATAATGATGATCAAACTTCTAGTCGTTCTGAACATGTGTTTGCAAGCAAACGAGAACTGCAATAAACTGTAGCTAATAATAGCTGGGTAGATCTCGAAATCAATTAGAAGACAAGACAATCGATGTAACGAGGTGCCTCTCGTCACGATTATGCTGATCAAATTTAAAGTTATAGCGGATTTTTGTTAGCAAGCCGAACAGGGATAAGAAGAAATGCGATGAATACTATCCGAAACATTATGACGACACGACAGAAGACATTCCTCTTTTGACTGAAACGTTGAAAAAATATCACACTTCATCCTGGACGCTGACTCAATGGACGTTGACTCTTCATCGTTTTCCTGTGCCTGTACTCTGGATATTTATCCGAGAAGATAGCAAGAAAAGTTTGTTGAGTGGTACTGTAAATTCGAACAACCACAGTCAGAACAATTGGTTTTTGTATGTAAGTTTTTGATTTAAGCTGCCAGTATTTTTCAATAATCTTCARAGAAAACATGAGTACTGGGCCAGAGACCATTCAACATCGCCGTAAATCTAGGAATTTCGATGCAGTTTTAAATTCGAAGACAACCTGTAAACTACAATCATTGAGACTACGTTGATCATGCATCTACTCGTACTGGATATCTGCTTACAAGCTGACAAAGAGAATAAAAAAAAGTCCGGCTGTTAGTCGCGATGATCCCAATCGTTTAATGAAATCTGGAAAGATCTTGAAATTTAGCAGAAGACGATTGAAGTGAAGAGATGCATTAATGTTTCAAAACATCACCGGGAAGTAATCTACTGAACGGGACTGCGAAATCGAACAACCACAGTCATTACCGTTGATTGAGTATGTAAGTTTTTAATTCAGCGCGGCTACATTTATTATATATTTCAGAGAAGTAGTGAGTATTGGGTCAGCATCCCTTCAACATCGTTGTTCACCGGGAAATTGAAATCCATGCAATTACAAGTTTGAAGACCATCTGAAGCCAACTTGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAGATAGCAAGAAAAGTTTG</pcr_primer_p1>
		<pcr_primer_p2>AGTAGATGCATGATCAACGTAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGAAGATAGCAAGAAAAGTTTGTTGAGTGGTACTGTAAATTCGAACAACCACAGTCAGAACAATTGGTTTTTGTATGTAAGTTTTTGATTTAAGCTGCCAGTATTTTTCAATAATCTTCAAAGAAAACATGAGTACTGGGCCAGAGACCATTCAACATCGCCGTAAATCTAGGAATTTCGATGCAGTTTTAAATTCGAAGACAACCTGTAAACTACAATCATTGAGACTACGTTGATCATGCATCTACT</canonical_amplicon>
		<polymorphic_amplicon>GAGAAGATAGCAAGAAAAGTTTGTTGAGTGGTACTGTAAATTCGAACAACCACAGTCAGAACAATTGGTTTTTGTATGTAAGTTTTTGATTTAAGCTGCCAGTATTTTTCAATAATCTTCARAGAAAACATGAGTACTGGGCCAGAGACCATTCAACATCGCCGTAAATCTAGGAATTTCGATGCAGTTTTAAATTCGAAGACAACCTGTAAACTACAATCATTGAGACTACGTTGATCATGCATCTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8217</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>94711</contig_pos>
        <strand>+</strand>
        <context>AGACAACCTG[A/T]AAACTACAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGCCGTAAATCTAGGAATTTCGATGCAGTTTTAAATTCGAAGACAACCTG</left_flank>
        <right_flank>AAACTACAATCATTGAGACTACGTTGATCATGCATCTACTCGTACTGGAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTGGGTAGATCTCGAAATCAATTAGAAGACAAGACAATCGATGTAACGAGGTGCCTCTCGTCACGATTATGCTGATCAAATTTAAAGTTATAGCGGATTTTTGTTAGCAAGCCGAACAGGGATAAGAAGAAATGCGATGAATACTATCCGAAACATTATGACGACACGACAGAAGACATTCCTCTTTTGACTGAAACGTTGAAAAAATATCACACTTCATCCTGGACGCTGACTCAATGGACGTTGACTCTTCATCGTTTTCCTGTGCCTGTACTCTGGATATTTATCCGAGAAGATAGCAAGAAAAGTTTGTTGAGTGGTACTGTAAATTCGAACAACCACAGTCAGAACAATTGGTTTTTGTATGTAAGTTTTTGATTTAAGCTGCCAGTATTTTTCAATAATCTTCAAAGAAAACATGAGTACTGGGCCAGAGACCATTCAACATCGCCGTAAATCTAGGAATTTCGATGCAGTTTTAAATTCGAAGACAACCTGTAAACTACAATCATTGAGACTACGTTGATCATGCATCTACTCGTACTGGATATCTGCTTACAAGCTGACAAAGAGAATAAAAAAAAGTCCGGCTGTTAGTCGCGATGATCCCAATCGTTTAATGAAATCTGGAAAGATCTTGAAATTTAGCAGAAGACGATTGAAGTGAAGAGATGCATTAATGTTTCAAAACATCACCGGGAAGTAATCTACTGAACGGGACTGCGAAATCGAACAACCACAGTCATTACCGTTGATTGAGTATGTAAGTTTTTAATTCAGCGCGGCTACATTTATTATATATTTCAGAGAAGTAGTGAGTATTGGGTCAGCATCCCTTCAACATCGTTGTTCACCGGGAAATTGAAATCCATGCAATTACAAGTTTGAAGACCATCTGAAGCCAACTTGGCATAATGATGGTCAACTTCTAGTCGTTCTGGAATATAGCTGGAAAGATCTTGAAATTTATTAAAAGACAAGACGAGCGAAGGGAAAAGA</canonical>
            <polymorphic>GCTGGGTAGATCTCGAAATCAATTAGAAGACAAGACAATCGATGTAACGAGGTGCCTCTCGTCACGATTATGCTGATCAAATTTAAAGTTATAGCGGATTTTTGTTAGCAAGCCGAACAGGGATAAGAAGAAATGCGATGAATACTATCCGAAACATTATGACGACACGACAGAAGACATTCCTCTTTTGACTGAAACGTTGAAAAAATATCACACTTCATCCTGGACGCTGACTCAATGGACGTTGACTCTTCATCGTTTTCCTGTGCCTGTACTCTGGATATTTATCCGAGAAGATAGCAAGAAAAGTTTGTTGAGTGGTACTGTAAATTCGAACAACCACAGTCAGAACAATTGGTTTTTGTATGTAAGTTTTTGATTTAAGCTGCCAGTATTTTTCAATAATCTTCAAAGAAAACATGAGTACTGGGCCAGAGACCATTCAACATCGCCGTAAATCTAGGAATTTCGATGCAGTTTTAAATTCGAAGACAACCTGWAAACTACAATCATTGAGACTACGTTGATCATGCATCTACTCGTACTGGATATCTGCTTACAAGCTGACAAAGAGAATAAAAAAAAGTCCGGCTGTTAGTCGCGATGATCCCAATCGTTTAATGAAATCTGGAAAGATCTTGAAATTTAGCAGAAGACGATTGAAGTGAAGAGATGCATTAATGTTTCAAAACATCACCGGGAAGTAATCTACTGAACGGGACTGCGAAATCGAACAACCACAGTCATTACCGTTGATTGAGTATGTAAGTTTTTAATTCAGCGCGGCTACATTTATTATATATTTCAGAGAAGTAGTGAGTATTGGGTCAGCATCCCTTCAACATCGTTGTTCACCGGGAAATTGAAATCCATGCAATTACAAGTTTGAAGACCATCTGAAGCCAACTTGGCATAATGATGGTCAACTTCTAGTCGTTCTGGAATATAGCTGGAAAGATCTTGAAATTTATTAAAAGACAAGACGAGCGAAGGGAAAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>351 255 246 76 72</canonical_bands>
                <polymorphic_bands>606 246 76 72</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTACTGTAAATTCGAACAACCAC</pcr_primer_p1>
		<pcr_primer_p2>CTTGTAAGCAGATATCCAGTACG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GTACTGTAAATTCGAACAACCACAGTCAGAACAATTGGTTTTTGTATGTAAGTTTTTGATTTAAGCTGCCAGTATTTTTCAATAATCTTCAAAGAAAACATGAGTACTGGGCCAGAGACCATTCAACATCGCCGTAAATCTAGGAATTTCGATGCAGTTTTAAATTCGAAGACAACCTGTAAACTACAATCATTGAGACTACGTTGATCATGCATCTACTCGTACTGGATATCTGCTTACAAG</canonical_amplicon>
		<polymorphic_amplicon>GTACTGTAAATTCGAACAACCACAGTCAGAACAATTGGTTTTTGTATGTAAGTTTTTGATTTAAGCTGCCAGTATTTTTCAATAATCTTCAAAGAAAACATGAGTACTGGGCCAGAGACCATTCAACATCGCCGTAAATCTAGGAATTTCGATGCAGTTTTAAATTCGAAGACAACCTGWAAACTACAATCATTGAGACTACGTTGATCATGCATCTACTCGTACTGGATATCTGCTTACAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8218</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>94780</contig_pos>
        <strand>+</strand>
        <context>ACAAGCTGAC[A/G]AAGAGAATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTACGTTGATCATGCATCTACTCGTACTGGATATCTGCTTACAAGCTGAC</left_flank>
        <right_flank>AAGAGAATAAAAAAAAGTCCGGCTGTTAGTCGCGATGATCCCAATCGTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCTGATCAAATTTAAAGTTATAGCGGATTTTTGTTAGCAAGCCGAACAGGGATAAGAAGAAATGCGATGAATACTATCCGAAACATTATGACGACACGACAGAAGACATTCCTCTTTTGACTGAAACGTTGAAAAAATATCACACTTCATCCTGGACGCTGACTCAATGGACGTTGACTCTTCATCGTTTTCCTGTGCCTGTACTCTGGATATTTATCCGAGAAGATAGCAAGAAAAGTTTGTTGAGTGGTACTGTAAATTCGAACAACCACAGTCAGAACAATTGGTTTTTGTATGTAAGTTTTTGATTTAAGCTGCCAGTATTTTTCAATAATCTTCAAAGAAAACATGAGTACTGGGCCAGAGACCATTCAACATCGCCGTAAATCTAGGAATTTCGATGCAGTTTTAAATTCGAAGACAACCTGTAAACTACAATCATTGAGACTACGTTGATCATGCATCTACTCGTACTGGATATCTGCTTACAAGCTGACAAAGAGAATAAAAAAAAGTCCGGCTGTTAGTCGCGATGATCCCAATCGTTTAATGAAATCTGGAAAGATCTTGAAATTTAGCAGAAGACGATTGAAGTGAAGAGATGCATTAATGTTTCAAAACATCACCGGGAAGTAATCTACTGAACGGGACTGCGAAATCGAACAACCACAGTCATTACCGTTGATTGAGTATGTAAGTTTTTAATTCAGCGCGGCTACATTTATTATATATTTCAGAGAAGTAGTGAGTATTGGGTCAGCATCCCTTCAACATCGTTGTTCACCGGGAAATTGAAATCCATGCAATTACAAGTTTGAAGACCATCTGAAGCCAACTTGGCATAATGATGGTCAACTTCTAGTCGTTCTGGAATATAGCTGGAAAGATCTTGAAATTTATTAAAAGACAAGACGAGCGAAGGGAAAAGATGCGTTAACGATTATGCTGATCAAATTTCAAGTCATAGTGGATTTGTGTTAGCAAGCCGACACAGGAAA</canonical>
            <polymorphic>ATGCTGATCAAATTTAAAGTTATAGCGGATTTTTGTTAGCAAGCCGAACAGGGATAAGAAGAAATGCGATGAATACTATCCGAAACATTATGACGACACGACAGAAGACATTCCTCTTTTGACTGAAACGTTGAAAAAATATCACACTTCATCCTGGACGCTGACTCAATGGACGTTGACTCTTCATCGTTTTCCTGTGCCTGTACTCTGGATATTTATCCGAGAAGATAGCAAGAAAAGTTTGTTGAGTGGTACTGTAAATTCGAACAACCACAGTCAGAACAATTGGTTTTTGTATGTAAGTTTTTGATTTAAGCTGCCAGTATTTTTCAATAATCTTCAAAGAAAACATGAGTACTGGGCCAGAGACCATTCAACATCGCCGTAAATCTAGGAATTTCGATGCAGTTTTAAATTCGAAGACAACCTGTAAACTACAATCATTGAGACTACGTTGATCATGCATCTACTCGTACTGGATATCTGCTTACAAGCTGACRAAGAGAATAAAAAAAAGTCCGGCTGTTAGTCGCGATGATCCCAATCGTTTAATGAAATCTGGAAAGATCTTGAAATTTAGCAGAAGACGATTGAAGTGAAGAGATGCATTAATGTTTCAAAACATCACCGGGAAGTAATCTACTGAACGGGACTGCGAAATCGAACAACCACAGTCATTACCGTTGATTGAGTATGTAAGTTTTTAATTCAGCGCGGCTACATTTATTATATATTTCAGAGAAGTAGTGAGTATTGGGTCAGCATCCCTTCAACATCGTTGTTCACCGGGAAATTGAAATCCATGCAATTACAAGTTTGAAGACCATCTGAAGCCAACTTGGCATAATGATGGTCAACTTCTAGTCGTTCTGGAATATAGCTGGAAAGATCTTGAAATTTATTAAAAGACAAGACGAGCGAAGGGAAAAGATGCGTTAACGATTATGCTGATCAAATTTCAAGTCATAGTGGATTTGTGTTAGCAAGCCGACACAGGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACAATCATTGAGACTACGTTGA</pcr_primer_p1>
		<pcr_primer_p2>CGGTAATGACTGTGGTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TACAATCATTGAGACTACGTTGATCATGCATCTACTCGTACTGGATATCTGCTTACAAGCTGACAAAGAGAATAAAAAAAAGTCCGGCTGTTAGTCGCGATGATCCCAATCGTTTAATGAAATCTGGAAAGATCTTGAAATTTAGCAGAAGACGATTGAAGTGAAGAGATGCATTAATGTTTCAAAACATCACCGGGAAGTAATCTACTGAACGGGACTGCGAAATCGAACAACCACAGTCATTACCG</canonical_amplicon>
		<polymorphic_amplicon>TACAATCATTGAGACTACGTTGATCATGCATCTACTCGTACTGGATATCTGCTTACAAGCTGACRAAGAGAATAAAAAAAAGTCCGGCTGTTAGTCGCGATGATCCCAATCGTTTAATGAAATCTGGAAAGATCTTGAAATTTAGCAGAAGACGATTGAAGTGAAGAGATGCATTAATGTTTCAAAACATCACCGGGAAGTAATCTACTGAACGGGACTGCGAAATCGAACAACCACAGTCATTACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8219</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>94922</contig_pos>
        <strand>+</strand>
        <context>GAAGTAATCT[A/G]CTGAACGGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAGTGAAGAGATGCATTAATGTTTCAAAACATCACCGGGAAGTAATCT</left_flank>
        <right_flank>CTGAACGGGACTGCGAAATCGAACAACCACAGTCATTACCGTTGATTGAG</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACACTTCATCCTGGACGCTGACTCAATGGACGTTGACTCTTCATCGTTTTCCTGTGCCTGTACTCTGGATATTTATCCGAGAAGATAGCAAGAAAAGTTTGTTGAGTGGTACTGTAAATTCGAACAACCACAGTCAGAACAATTGGTTTTTGTATGTAAGTTTTTGATTTAAGCTGCCAGTATTTTTCAATAATCTTCAAAGAAAACATGAGTACTGGGCCAGAGACCATTCAACATCGCCGTAAATCTAGGAATTTCGATGCAGTTTTAAATTCGAAGACAACCTGTAAACTACAATCATTGAGACTACGTTGATCATGCATCTACTCGTACTGGATATCTGCTTACAAGCTGACAAAGAGAATAAAAAAAAGTCCGGCTGTTAGTCGCGATGATCCCAATCGTTTAATGAAATCTGGAAAGATCTTGAAATTTAGCAGAAGACGATTGAAGTGAAGAGATGCATTAATGTTTCAAAACATCACCGGGAAGTAATCTACTGAACGGGACTGCGAAATCGAACAACCACAGTCATTACCGTTGATTGAGTATGTAAGTTTTTAATTCAGCGCGGCTACATTTATTATATATTTCAGAGAAGTAGTGAGTATTGGGTCAGCATCCCTTCAACATCGTTGTTCACCGGGAAATTGAAATCCATGCAATTACAAGTTTGAAGACCATCTGAAGCCAACTTGGCATAATGATGGTCAACTTCTAGTCGTTCTGGAATATAGCTGGAAAGATCTTGAAATTTATTAAAAGACAAGACGAGCGAAGGGAAAAGATGCGTTAACGATTATGCTGATCAAATTTCAAGTCATAGTGGATTTGTGTTAGCAAGCCGACACAGGAAATCAAGAAAAAACGTTTGGCTGATAGTTGCGATGATCACACTCGCTACATGGATGCTGGAAGAATCTCGAAATCAATCAGACGCAGAGACAATTCGAAGGAATAGAACTTTTCGAGAAAAAACAAACTTTTATCGATTTTTCC</canonical>
            <polymorphic>CACACTTCATCCTGGACGCTGACTCAATGGACGTTGACTCTTCATCGTTTTCCTGTGCCTGTACTCTGGATATTTATCCGAGAAGATAGCAAGAAAAGTTTGTTGAGTGGTACTGTAAATTCGAACAACCACAGTCAGAACAATTGGTTTTTGTATGTAAGTTTTTGATTTAAGCTGCCAGTATTTTTCAATAATCTTCAAAGAAAACATGAGTACTGGGCCAGAGACCATTCAACATCGCCGTAAATCTAGGAATTTCGATGCAGTTTTAAATTCGAAGACAACCTGTAAACTACAATCATTGAGACTACGTTGATCATGCATCTACTCGTACTGGATATCTGCTTACAAGCTGACAAAGAGAATAAAAAAAAGTCCGGCTGTTAGTCGCGATGATCCCAATCGTTTAATGAAATCTGGAAAGATCTTGAAATTTAGCAGAAGACGATTGAAGTGAAGAGATGCATTAATGTTTCAAAACATCACCGGGAAGTAATCTRCTGAACGGGACTGCGAAATCGAACAACCACAGTCATTACCGTTGATTGAGTATGTAAGTTTTTAATTCAGCGCGGCTACATTTATTATATATTTCAGAGAAGTAGTGAGTATTGGGTCAGCATCCCTTCAACATCGTTGTTCACCGGGAAATTGAAATCCATGCAATTACAAGTTTGAAGACCATCTGAAGCCAACTTGGCATAATGATGGTCAACTTCTAGTCGTTCTGGAATATAGCTGGAAAGATCTTGAAATTTATTAAAAGACAAGACGAGCGAAGGGAAAAGATGCGTTAACGATTATGCTGATCAAATTTCAAGTCATAGTGGATTTGTGTTAGCAAGCCGACACAGGAAATCAAGAAAAAACGTTTGGCTGATAGTTGCGATGATCACACTCGCTACATGGATGCTGGAAGAATCTCGAAATCAATCAGACGCAGAGACAATTCGAAGGAATAGAACTTTTCGAGAAAAAACAAACTTTTATCGATTTTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCGTACTGGATATCTGCTTAC</pcr_primer_p1>
		<pcr_primer_p2>GCGCTGAATTAAAAACTTACATA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTCGTACTGGATATCTGCTTACAAGCTGACAAAGAGAATAAAAAAAAGTCCGGCTGTTAGTCGCGATGATCCCAATCGTTTAATGAAATCTGGAAAGATCTTGAAATTTAGCAGAAGACGATTGAAGTGAAGAGATGCATTAATGTTTCAAAACATCACCGGGAAGTAATCTACTGAACGGGACTGCGAAATCGAACAACCACAGTCATTACCGTTGATTGAGTATGTAAGTTTTTAATTCAGCGC</canonical_amplicon>
		<polymorphic_amplicon>ACTCGTACTGGATATCTGCTTACAAGCTGACAAAGAGAATAAAAAAAAGTCCGGCTGTTAGTCGCGATGATCCCAATCGTTTAATGAAATCTGGAAAGATCTTGAAATTTAGCAGAAGACGATTGAAGTGAAGAGATGCATTAATGTTTCAAAACATCACCGGGAAGTAATCTRCTGAACGGGACTGCGAAATCGAACAACCACAGTCATTACCGTTGATTGAGTATGTAAGTTTTTAATTCAGCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8220</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>98703</contig_pos>
        <strand>+</strand>
        <context>CTCTGAAGTT[A/T]TTATTGTTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTT</left_flank>
        <right_flank>TTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGTCCCAGGAGTACCGATTGCATACCTACGTGAAAAGCTTGGTATAGGTGAACCAATCTCCCGATGGAGCATGAAGGAGTAGGATAAAGTCTTCTGGCCGCACATTTCAGCACACCTTCTTCGCATTTTTGGTATAGAATGGTGTAGTTGACTGGCATCTCACGAAAGCCGCGTTCGAATTCATCAATTTCCGAACATGATTGTCCTATTTCAATAATGTTGGACTAAATGTTCAAAAAACTTTCAAGCAGTTTCGAATTGGACACTCACATCTCGGAAACAAGAGAAAGCGTCTCCGTAAACTTTACTTCCAACGAAATCCGCTGCTTCAAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACATCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGTTTGACGCATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGAATTCATGTCTTAAACCTTTTAGAAGTTGGCTTTCAGGCCAAATAGATGAAAACGAAGAAGAAATAGCAAATAGCAGAATTAGAAGCACAGTTCGTACCATGTCTTCCTTTCTGATAAATGTTCCAACATTTAGGTTTTTATAGGCAAAAAATAGAAAAGCTTTTGTTTAGAACTATTGTTCGCATACAAACAAAATGATATGTATCTGAAGGTTTTTCATAATATTCTTTTCTGTTCATCATGATGATTCAAGTTTTTTCCGTTTGTTCTTCTATCCAGAAAAACAAACATTTTCAGGGCTTTTATACTTTCACAGTAACTGCCAAAATTTTTTTGGTATAGTCCTTTTGTTTTGAAAAAAAT</canonical>
            <polymorphic>GTTGTCCCAGGAGTACCGATTGCATACCTACGTGAAAAGCTTGGTATAGGTGAACCAATCTCCCGATGGAGCATGAAGGAGTAGGATAAAGTCTTCTGGCCGCACATTTCAGCACACCTTCTTCGCATTTTTGGTATAGAATGGTGTAGTTGACTGGCATCTCACGAAAGCCGCGTTCGAATTCATCAATTTCCGAACATGATTGTCCTATTTCAATAATGTTGGACTAAATGTTCAAAAAACTTTCAAGCAGTTTCGAATTGGACACTCACATCTCGGAAACAAGAGAAAGCGTCTCCGTAAACTTTACTTCCAACGAAATCCGCTGCTTCAAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACATCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTWTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGTTTGACGCATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGAATTCATGTCTTAAACCTTTTAGAAGTTGGCTTTCAGGCCAAATAGATGAAAACGAAGAAGAAATAGCAAATAGCAGAATTAGAAGCACAGTTCGTACCATGTCTTCCTTTCTGATAAATGTTCCAACATTTAGGTTTTTATAGGCAAAAAATAGAAAAGCTTTTGTTTAGAACTATTGTTCGCATACAAACAAAATGATATGTATCTGAAGGTTTTTCATAATATTCTTTTCTGTTCATCATGATGATTCAAGTTTTTTCCGTTTGTTCTTCTATCCAGAAAAACAAACATTTTCAGGGCTTTTATACTTTCACAGTAACTGCCAAAATTTTTTTGGTATAGTCCTTTTGTTTTGAAAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGAAGAAAGCAACTACTTTTG</pcr_primer_p1>
		<pcr_primer_p2>ACCACACGAAGTGAGTAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACATCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGT</canonical_amplicon>
		<polymorphic_amplicon>AAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACATCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTWTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8221</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>98670</contig_pos>
        <strand>+</strand>
        <context>TTATTTACTT[C/T]GTGTTCAAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTT</left_flank>
        <right_flank>GTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCTAACACCACTGGATCTCCGTTCATGAACTGTTGTCCCAGGAGTACCGATTGCATACCTACGTGAAAAGCTTGGTATAGGTGAACCAATCTCCCGATGGAGCATGAAGGAGTAGGATAAAGTCTTCTGGCCGCACATTTCAGCACACCTTCTTCGCATTTTTGGTATAGAATGGTGTAGTTGACTGGCATCTCACGAAAGCCGCGTTCGAATTCATCAATTTCCGAACATGATTGTCCTATTTCAATAATGTTGGACTAAATGTTCAAAAAACTTTCAAGCAGTTTCGAATTGGACACTCACATCTCGGAAACAAGAGAAAGCGTCTCCGTAAACTTTACTTCCAACGAAATCCGCTGCTTCAAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACATCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGTTTGACGCATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGAATTCATGTCTTAAACCTTTTAGAAGTTGGCTTTCAGGCCAAATAGATGAAAACGAAGAAGAAATAGCAAATAGCAGAATTAGAAGCACAGTTCGTACCATGTCTTCCTTTCTGATAAATGTTCCAACATTTAGGTTTTTATAGGCAAAAAATAGAAAAGCTTTTGTTTAGAACTATTGTTCGCATACAAACAAAATGATATGTATCTGAAGGTTTTTCATAATATTCTTTTCTGTTCATCATGATGATTCAAGTTTTTTCCGTTTGTTCTTCTATCCAGAAAAACAAACATTTTCAGGGCTTTTATACTTTCACAGTAACTGCCAAAATT</canonical>
            <polymorphic>AATCTAACACCACTGGATCTCCGTTCATGAACTGTTGTCCCAGGAGTACCGATTGCATACCTACGTGAAAAGCTTGGTATAGGTGAACCAATCTCCCGATGGAGCATGAAGGAGTAGGATAAAGTCTTCTGGCCGCACATTTCAGCACACCTTCTTCGCATTTTTGGTATAGAATGGTGTAGTTGACTGGCATCTCACGAAAGCCGCGTTCGAATTCATCAATTTCCGAACATGATTGTCCTATTTCAATAATGTTGGACTAAATGTTCAAAAAACTTTCAAGCAGTTTCGAATTGGACACTCACATCTCGGAAACAAGAGAAAGCGTCTCCGTAAACTTTACTTCCAACGAAATCCGCTGCTTCAAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACATCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTYGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGTTTGACGCATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGAATTCATGTCTTAAACCTTTTAGAAGTTGGCTTTCAGGCCAAATAGATGAAAACGAAGAAGAAATAGCAAATAGCAGAATTAGAAGCACAGTTCGTACCATGTCTTCCTTTCTGATAAATGTTCCAACATTTAGGTTTTTATAGGCAAAAAATAGAAAAGCTTTTGTTTAGAACTATTGTTCGCATACAAACAAAATGATATGTATCTGAAGGTTTTTCATAATATTCTTTTCTGTTCATCATGATGATTCAAGTTTTTTCCGTTTGTTCTTCTATCCAGAAAAACAAACATTTTCAGGGCTTTTATACTTTCACAGTAACTGCCAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGAAGAAAGCAACTACTTTTG</pcr_primer_p1>
		<pcr_primer_p2>ACCACACGAAGTGAGTAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACATCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGT</canonical_amplicon>
		<polymorphic_amplicon>AAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACATCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTYGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8222</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>98602</contig_pos>
        <strand>+</strand>
        <context>TCGAAATGTT[C/T]CTTGTGATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTTTTGAAAGTTTGCACTGTACATCGTGTCCAAAGCAACTCGAAATGTT</left_flank>
        <right_flank>CTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAGAAAAGTTATCGTGAACTTAATGTTTGAAGTTTCTTCCATTGTTGCAATACTTTGAAGCATCAAAATCTAACACCACTGGATCTCCGTTCATGAACTGTTGTCCCAGGAGTACCGATTGCATACCTACGTGAAAAGCTTGGTATAGGTGAACCAATCTCCCGATGGAGCATGAAGGAGTAGGATAAAGTCTTCTGGCCGCACATTTCAGCACACCTTCTTCGCATTTTTGGTATAGAATGGTGTAGTTGACTGGCATCTCACGAAAGCCGCGTTCGAATTCATCAATTTCCGAACATGATTGTCCTATTTCAATAATGTTGGACTAAATGTTCAAAAAACTTTCAAGCAGTTTCGAATTGGACACTCACATCTCGGAAACAAGAGAAAGCGTCTCCGTAAACTTTACTTCCAACGAAATCCGCTGCTTCAAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACATCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGTTTGACGCATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGAATTCATGTCTTAAACCTTTTAGAAGTTGGCTTTCAGGCCAAATAGATGAAAACGAAGAAGAAATAGCAAATAGCAGAATTAGAAGCACAGTTCGTACCATGTCTTCCTTTCTGATAAATGTTCCAACATTTAGGTTTTTATAGGCAAAAAATAGAAAAGCTTTTGTTTAGAACTATTGTTCGCATACAAACAAAATGATATGTATCTGAAGGTTTTTCATAATATTCTTTTCTGTTCATCATGATGATTCAAGTTTTTTCCG</canonical>
            <polymorphic>AATAGAAAAGTTATCGTGAACTTAATGTTTGAAGTTTCTTCCATTGTTGCAATACTTTGAAGCATCAAAATCTAACACCACTGGATCTCCGTTCATGAACTGTTGTCCCAGGAGTACCGATTGCATACCTACGTGAAAAGCTTGGTATAGGTGAACCAATCTCCCGATGGAGCATGAAGGAGTAGGATAAAGTCTTCTGGCCGCACATTTCAGCACACCTTCTTCGCATTTTTGGTATAGAATGGTGTAGTTGACTGGCATCTCACGAAAGCCGCGTTCGAATTCATCAATTTCCGAACATGATTGTCCTATTTCAATAATGTTGGACTAAATGTTCAAAAAACTTTCAAGCAGTTTCGAATTGGACACTCACATCTCGGAAACAAGAGAAAGCGTCTCCGTAAACTTTACTTCCAACGAAATCCGCTGCTTCAAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACATCGTGTCCAAAGCAACTCGAAATGTTYCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGTTTGACGCATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGAATTCATGTCTTAAACCTTTTAGAAGTTGGCTTTCAGGCCAAATAGATGAAAACGAAGAAGAAATAGCAAATAGCAGAATTAGAAGCACAGTTCGTACCATGTCTTCCTTTCTGATAAATGTTCCAACATTTAGGTTTTTATAGGCAAAAAATAGAAAAGCTTTTGTTTAGAACTATTGTTCGCATACAAACAAAATGATATGTATCTGAAGGTTTTTCATAATATTCTTTTCTGTTCATCATGATGATTCAAGTTTTTTCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGAAGAAAGCAACTACTTTTG</pcr_primer_p1>
		<pcr_primer_p2>ACCACACGAAGTGAGTAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACATCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGT</canonical_amplicon>
		<polymorphic_amplicon>AAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACATCGTGTCCAAAGCAACTCGAAATGTTYCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8223</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>98576</contig_pos>
        <strand>+</strand>
        <context>GCACTGTACR[C/T]CGTGTCCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGCTGCTTCAAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACA</left_flank>
        <right_flank>CGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAAAAATTTGCTCCTTTGCGAGATAATAGAAAAGTTATCGTGAACTTAATGTTTGAAGTTTCTTCCATTGTTGCAATACTTTGAAGCATCAAAATCTAACACCACTGGATCTCCGTTCATGAACTGTTGTCCCAGGAGTACCGATTGCATACCTACGTGAAAAGCTTGGTATAGGTGAACCAATCTCCCGATGGAGCATGAAGGAGTAGGATAAAGTCTTCTGGCCGCACATTTCAGCACACCTTCTTCGCATTTTTGGTATAGAATGGTGTAGTTGACTGGCATCTCACGAAAGCCGCGTTCGAATTCATCAATTTCCGAACATGATTGTCCTATTTCAATAATGTTGGACTAAATGTTCAAAAAACTTTCAAGCAGTTTCGAATTGGACACTCACATCTCGGAAACAAGAGAAAGCGTCTCCGTAAACTTTACTTCCAACGAAATCCGCTGCTTCAAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACATCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGTTTGACGCATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGAATTCATGTCTTAAACCTTTTAGAAGTTGGCTTTCAGGCCAAATAGATGAAAACGAAGAAGAAATAGCAAATAGCAGAATTAGAAGCACAGTTCGTACCATGTCTTCCTTTCTGATAAATGTTCCAACATTTAGGTTTTTATAGGCAAAAAATAGAAAAGCTTTTGTTTAGAACTATTGTTCGCATACAAACAAAATGATATGTATCTGAAGGTTTTTCATAATATTCTTTTCTGTT</canonical>
            <polymorphic>TTTAAAAATTTGCTCCTTTGCGAGATAATAGAAAAGTTATCGTGAACTTAATGTTTGAAGTTTCTTCCATTGTTGCAATACTTTGAAGCATCAAAATCTAACACCACTGGATCTCCGTTCATGAACTGTTGTCCCAGGAGTACCGATTGCATACCTACGTGAAAAGCTTGGTATAGGTGAACCAATCTCCCGATGGAGCATGAAGGAGTAGGATAAAGTCTTCTGGCCGCACATTTCAGCACACCTTCTTCGCATTTTTGGTATAGAATGGTGTAGTTGACTGGCATCTCACGAAAGCCGCGTTCGAATTCATCAATTTCCGAACATGATTGTCCTATTTCAATAATGTTGGACTAAATGTTCAAAAAACTTTCAAGCAGTTTCGAATTGGACACTCACATCTCGGAAACAAGAGAAAGCGTCTCCGTAAACTTTACTTCCAACGAAATCCGCTGCTTCAAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACAYCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGTTTGACGCATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGAATTCATGTCTTAAACCTTTTAGAAGTTGGCTTTCAGGCCAAATAGATGAAAACGAAGAAGAAATAGCAAATAGCAGAATTAGAAGCACAGTTCGTACCATGTCTTCCTTTCTGATAAATGTTCCAACATTTAGGTTTTTATAGGCAAAAAATAGAAAAGCTTTTGTTTAGAACTATTGTTCGCATACAAACAAAATGATATGTATCTGAAGGTTTTTCATAATATTCTTTTCTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAACTTTACTTCCAACGAAATC</pcr_primer_p1>
		<pcr_primer_p2>TGATGTATCGTTTCTCATATCG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TAAACTTTACTTCCAACGAAATCCGCTGCTTCAAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACATCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCA</canonical_amplicon>
		<polymorphic_amplicon>TAAACTTTACTTCCAACGAAATCCGCTGCTTCAAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACAYCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8224</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>98575</contig_pos>
        <strand>+</strand>
        <context>TGCACTGTAC[A/G]YCGTGTCCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCGCTGCTTCAAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTAC</left_flank>
        <right_flank>TCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTAAAAATTTGCTCCTTTGCGAGATAATAGAAAAGTTATCGTGAACTTAATGTTTGAAGTTTCTTCCATTGTTGCAATACTTTGAAGCATCAAAATCTAACACCACTGGATCTCCGTTCATGAACTGTTGTCCCAGGAGTACCGATTGCATACCTACGTGAAAAGCTTGGTATAGGTGAACCAATCTCCCGATGGAGCATGAAGGAGTAGGATAAAGTCTTCTGGCCGCACATTTCAGCACACCTTCTTCGCATTTTTGGTATAGAATGGTGTAGTTGACTGGCATCTCACGAAAGCCGCGTTCGAATTCATCAATTTCCGAACATGATTGTCCTATTTCAATAATGTTGGACTAAATGTTCAAAAAACTTTCAAGCAGTTTCGAATTGGACACTCACATCTCGGAAACAAGAGAAAGCGTCTCCGTAAACTTTACTTCCAACGAAATCCGCTGCTTCAAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACATCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGTTTGACGCATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGAATTCATGTCTTAAACCTTTTAGAAGTTGGCTTTCAGGCCAAATAGATGAAAACGAAGAAGAAATAGCAAATAGCAGAATTAGAAGCACAGTTCGTACCATGTCTTCCTTTCTGATAAATGTTCCAACATTTAGGTTTTTATAGGCAAAAAATAGAAAAGCTTTTGTTTAGAACTATTGTTCGCATACAAACAAAATGATATGTATCTGAAGGTTTTTCATAATATTCTTTTCTGT</canonical>
            <polymorphic>TTTTAAAAATTTGCTCCTTTGCGAGATAATAGAAAAGTTATCGTGAACTTAATGTTTGAAGTTTCTTCCATTGTTGCAATACTTTGAAGCATCAAAATCTAACACCACTGGATCTCCGTTCATGAACTGTTGTCCCAGGAGTACCGATTGCATACCTACGTGAAAAGCTTGGTATAGGTGAACCAATCTCCCGATGGAGCATGAAGGAGTAGGATAAAGTCTTCTGGCCGCACATTTCAGCACACCTTCTTCGCATTTTTGGTATAGAATGGTGTAGTTGACTGGCATCTCACGAAAGCCGCGTTCGAATTCATCAATTTCCGAACATGATTGTCCTATTTCAATAATGTTGGACTAAATGTTCAAAAAACTTTCAAGCAGTTTCGAATTGGACACTCACATCTCGGAAACAAGAGAAAGCGTCTCCGTAAACTTTACTTCCAACGAAATCCGCTGCTTCAAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACRTCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGTTTGACGCATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGAATTCATGTCTTAAACCTTTTAGAAGTTGGCTTTCAGGCCAAATAGATGAAAACGAAGAAGAAATAGCAAATAGCAGAATTAGAAGCACAGTTCGTACCATGTCTTCCTTTCTGATAAATGTTCCAACATTTAGGTTTTTATAGGCAAAAAATAGAAAAGCTTTTGTTTAGAACTATTGTTCGCATACAAACAAAATGATATGTATCTGAAGGTTTTTCATAATATTCTTTTCTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGTACA</site>
                <isoschizomers>
                    <enzyme>AauI</enzyme>
                    <enzyme>Bsp1407I</enzyme>
                    <enzyme>BsrGI</enzyme>
                    <enzyme>SspBI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAACTTTACTTCCAACGAAATC</pcr_primer_p1>
		<pcr_primer_p2>TGATGTATCGTTTCTCATATCG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TAAACTTTACTTCCAACGAAATCCGCTGCTTCAAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACATCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCA</canonical_amplicon>
		<polymorphic_amplicon>TAAACTTTACTTCCAACGAAATCCGCTGCTTCAAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACRTCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8225</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>98373</contig_pos>
        <strand>+</strand>
        <context>TCTCACGAAA[A/G]CCGCGTTCGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTCGCATTTTTGGTATAGAATGGTGTAGTTGACTGGCATCTCACGAAA</left_flank>
        <right_flank>CCGCGTTCGAATTCATCAATTTCCGAACATGATTGTCCTATTTCAATAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTGCACGGAGTAGAGGTTCTGGAAGCAAAACGCTCTTCTGAAACCCTCTCTGTATGCTTGGCACTCCTAATCAGATATTTTATTATTTTCCAAAAATCTACTAGGTAATATTTTGTTGATTTTGAATTACAGTATGTGAACCATTCTGTTCATTTTAATATCAACGTGAAAAAATATTCAGAACTTGAAAACAAGGTTCATTTTAAAAATTTGCTCCTTTGCGAGATAATAGAAAAGTTATCGTGAACTTAATGTTTGAAGTTTCTTCCATTGTTGCAATACTTTGAAGCATCAAAATCTAACACCACTGGATCTCCGTTCATGAACTGTTGTCCCAGGAGTACCGATTGCATACCTACGTGAAAAGCTTGGTATAGGTGAACCAATCTCCCGATGGAGCATGAAGGAGTAGGATAAAGTCTTCTGGCCGCACATTTCAGCACACCTTCTTCGCATTTTTGGTATAGAATGGTGTAGTTGACTGGCATCTCACGAAAGCCGCGTTCGAATTCATCAATTTCCGAACATGATTGTCCTATTTCAATAATGTTGGACTAAATGTTCAAAAAACTTTCAAGCAGTTTCGAATTGGACACTCACATCTCGGAAACAAGAGAAAGCGTCTCCGTAAACTTTACTTCCAACGAAATCCGCTGCTTCAAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACATCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGTTTGACGCATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGAATTCATGTCTTAAACCTTTTAGAAGTTGGCTTT</canonical>
            <polymorphic>TGGTGCACGGAGTAGAGGTTCTGGAAGCAAAACGCTCTTCTGAAACCCTCTCTGTATGCTTGGCACTCCTAATCAGATATTTTATTATTTTCCAAAAATCTACTAGGTAATATTTTGTTGATTTTGAATTACAGTATGTGAACCATTCTGTTCATTTTAATATCAACGTGAAAAAATATTCAGAACTTGAAAACAAGGTTCATTTTAAAAATTTGCTCCTTTGCGAGATAATAGAAAAGTTATCGTGAACTTAATGTTTGAAGTTTCTTCCATTGTTGCAATACTTTGAAGCATCAAAATCTAACACCACTGGATCTCCGTTCATGAACTGTTGTCCCAGGAGTACCGATTGCATACCTACGTGAAAAGCTTGGTATAGGTGAACCAATCTCCCGATGGAGCATGAAGGAGTAGGATAAAGTCTTCTGGCCGCACATTTCAGCACACCTTCTTCGCATTTTTGGTATAGAATGGTGTAGTTGACTGGCATCTCACGAAARCCGCGTTCGAATTCATCAATTTCCGAACATGATTGTCCTATTTCAATAATGTTGGACTAAATGTTCAAAAAACTTTCAAGCAGTTTCGAATTGGACACTCACATCTCGGAAACAAGAGAAAGCGTCTCCGTAAACTTTACTTCCAACGAAATCCGCTGCTTCAAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACATCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGTTTGACGCATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGAATTCATGTCTTAAACCTTTTAGAAGTTGGCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>432 342 155 71</canonical_bands>
                <polymorphic_bands>432 342 226</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>369 257 239 71 60 4</canonical_bands>
                <polymorphic_bands>369 328 239 60 4</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>497 432 71</canonical_bands>
                <polymorphic_bands>568 432</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGGAGTAGGATAAAGTCTTCTG</pcr_primer_p1>
		<pcr_primer_p2>GGATTTCGTTGGAAGTAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGGAGTAGGATAAAGTCTTCTGGCCGCACATTTCAGCACACCTTCTTCGCATTTTTGGTATAGAATGGTGTAGTTGACTGGCATCTCACGAAAGCCGCGTTCGAATTCATCAATTTCCGAACATGATTGTCCTATTTCAATAATGTTGGACTAAATGTTCAAAAAACTTTCAAGCAGTTTCGAATTGGACACTCACATCTCGGAAACAAGAGAAAGCGTCTCCGTAAACTTTACTTCCAACGAAATCC</canonical_amplicon>
		<polymorphic_amplicon>GAAGGAGTAGGATAAAGTCTTCTGGCCGCACATTTCAGCACACCTTCTTCGCATTTTTGGTATAGAATGGTGTAGTTGACTGGCATCTCACGAAARCCGCGTTCGAATTCATCAATTTCCGAACATGATTGTCCTATTTCAATAATGTTGGACTAAATGTTCAAAAAACTTTCAAGCAGTTTCGAATTGGACACTCACATCTCGGAAACAAGAGAAAGCGTCTCCGTAAACTTTACTTCCAACGAAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8226</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>98348</contig_pos>
        <strand>+</strand>
        <context>TAYAGAATGG[A/T]GTAGTTGACT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTGGCCGCACATTTCAGCACACCTTCTTCGCATTTTTGGTATAGAATGG</left_flank>
        <right_flank>GTAGTTGACTGGCATCTCACGAAAGCCGCGTTCGAATTCATCAATTTCCG</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATCAAATCTGAACGGGATGTGTTTGGTGCACGGAGTAGAGGTTCTGGAAGCAAAACGCTCTTCTGAAACCCTCTCTGTATGCTTGGCACTCCTAATCAGATATTTTATTATTTTCCAAAAATCTACTAGGTAATATTTTGTTGATTTTGAATTACAGTATGTGAACCATTCTGTTCATTTTAATATCAACGTGAAAAAATATTCAGAACTTGAAAACAAGGTTCATTTTAAAAATTTGCTCCTTTGCGAGATAATAGAAAAGTTATCGTGAACTTAATGTTTGAAGTTTCTTCCATTGTTGCAATACTTTGAAGCATCAAAATCTAACACCACTGGATCTCCGTTCATGAACTGTTGTCCCAGGAGTACCGATTGCATACCTACGTGAAAAGCTTGGTATAGGTGAACCAATCTCCCGATGGAGCATGAAGGAGTAGGATAAAGTCTTCTGGCCGCACATTTCAGCACACCTTCTTCGCATTTTTGGTATAGAATGGTGTAGTTGACTGGCATCTCACGAAAGCCGCGTTCGAATTCATCAATTTCCGAACATGATTGTCCTATTTCAATAATGTTGGACTAAATGTTCAAAAAACTTTCAAGCAGTTTCGAATTGGACACTCACATCTCGGAAACAAGAGAAAGCGTCTCCGTAAACTTTACTTCCAACGAAATCCGCTGCTTCAAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACATCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGTTTGACGCATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGAATTCATGT</canonical>
            <polymorphic>TTATCAAATCTGAACGGGATGTGTTTGGTGCACGGAGTAGAGGTTCTGGAAGCAAAACGCTCTTCTGAAACCCTCTCTGTATGCTTGGCACTCCTAATCAGATATTTTATTATTTTCCAAAAATCTACTAGGTAATATTTTGTTGATTTTGAATTACAGTATGTGAACCATTCTGTTCATTTTAATATCAACGTGAAAAAATATTCAGAACTTGAAAACAAGGTTCATTTTAAAAATTTGCTCCTTTGCGAGATAATAGAAAAGTTATCGTGAACTTAATGTTTGAAGTTTCTTCCATTGTTGCAATACTTTGAAGCATCAAAATCTAACACCACTGGATCTCCGTTCATGAACTGTTGTCCCAGGAGTACCGATTGCATACCTACGTGAAAAGCTTGGTATAGGTGAACCAATCTCCCGATGGAGCATGAAGGAGTAGGATAAAGTCTTCTGGCCGCACATTTCAGCACACCTTCTTCGCATTTTTGGTATAGAATGGWGTAGTTGACTGGCATCTCACGAAAGCCGCGTTCGAATTCATCAATTTCCGAACATGATTGTCCTATTTCAATAATGTTGGACTAAATGTTCAAAAAACTTTCAAGCAGTTTCGAATTGGACACTCACATCTCGGAAACAAGAGAAAGCGTCTCCGTAAACTTTACTTCCAACGAAATCCGCTGCTTCAAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACATCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGTTTGACGCATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGAATTCATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>103 101 94 77 75 59 58 55 52 35 33 32 30 30 28 25 23 18 18 12 10 7 7 5 4 3 2 2 2</canonical_bands>
                <polymorphic_bands>103 101 94 77 75 59 58 55 52 48 35 33 32 30 28 25 23 18 12 10 7 7 5 4 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCTAACACCACTGGATCTC</pcr_primer_p1>
		<pcr_primer_p2>ATTGAAATAGGACAATCATGTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAATCTAACACCACTGGATCTCCGTTCATGAACTGTTGTCCCAGGAGTACCGATTGCATACCTACGTGAAAAGCTTGGTATAGGTGAACCAATCTCCCGATGGAGCATGAAGGAGTAGGATAAAGTCTTCTGGCCGCACATTTCAGCACACCTTCTTCGCATTTTTGGTATAGAATGGTGTAGTTGACTGGCATCTCACGAAAGCCGCGTTCGAATTCATCAATTTCCGAACATGATTGTCCTATTTCAAT</canonical_amplicon>
		<polymorphic_amplicon>AAATCTAACACCACTGGATCTCCGTTCATGAACTGTTGTCCCAGGAGTACCGATTGCATACCTACGTGAAAAGCTTGGTATAGGTGAACCAATCTCCCGATGGAGCATGAAGGAGTAGGATAAAGTCTTCTGGCCGCACATTTCAGCACACCTTCTTCGCATTTTTGGTATAGAATGGWGTAGTTGACTGGCATCTCACGAAAGCCGCGTTCGAATTCATCAATTTCCGAACATGATTGTCCTATTTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8227</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>98340</contig_pos>
        <strand>+</strand>
        <context>ATTTTTGGTA[C/T]AGAATGGWGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAGTCTTCTGGCCGCACATTTCAGCACACCTTCTTCGCATTTTTGGTA</left_flank>
        <right_flank>AGAATGGTGTAGTTGACTGGCATCTCACGAAAGCCGCGTTCGAATTCATC</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGTTTTTATCAAATCTGAACGGGATGTGTTTGGTGCACGGAGTAGAGGTTCTGGAAGCAAAACGCTCTTCTGAAACCCTCTCTGTATGCTTGGCACTCCTAATCAGATATTTTATTATTTTCCAAAAATCTACTAGGTAATATTTTGTTGATTTTGAATTACAGTATGTGAACCATTCTGTTCATTTTAATATCAACGTGAAAAAATATTCAGAACTTGAAAACAAGGTTCATTTTAAAAATTTGCTCCTTTGCGAGATAATAGAAAAGTTATCGTGAACTTAATGTTTGAAGTTTCTTCCATTGTTGCAATACTTTGAAGCATCAAAATCTAACACCACTGGATCTCCGTTCATGAACTGTTGTCCCAGGAGTACCGATTGCATACCTACGTGAAAAGCTTGGTATAGGTGAACCAATCTCCCGATGGAGCATGAAGGAGTAGGATAAAGTCTTCTGGCCGCACATTTCAGCACACCTTCTTCGCATTTTTGGTATAGAATGGTGTAGTTGACTGGCATCTCACGAAAGCCGCGTTCGAATTCATCAATTTCCGAACATGATTGTCCTATTTCAATAATGTTGGACTAAATGTTCAAAAAACTTTCAAGCAGTTTCGAATTGGACACTCACATCTCGGAAACAAGAGAAAGCGTCTCCGTAAACTTTACTTCCAACGAAATCCGCTGCTTCAAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACATCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGTTTGACGCATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGA</canonical>
            <polymorphic>TTCTGTTTTTATCAAATCTGAACGGGATGTGTTTGGTGCACGGAGTAGAGGTTCTGGAAGCAAAACGCTCTTCTGAAACCCTCTCTGTATGCTTGGCACTCCTAATCAGATATTTTATTATTTTCCAAAAATCTACTAGGTAATATTTTGTTGATTTTGAATTACAGTATGTGAACCATTCTGTTCATTTTAATATCAACGTGAAAAAATATTCAGAACTTGAAAACAAGGTTCATTTTAAAAATTTGCTCCTTTGCGAGATAATAGAAAAGTTATCGTGAACTTAATGTTTGAAGTTTCTTCCATTGTTGCAATACTTTGAAGCATCAAAATCTAACACCACTGGATCTCCGTTCATGAACTGTTGTCCCAGGAGTACCGATTGCATACCTACGTGAAAAGCTTGGTATAGGTGAACCAATCTCCCGATGGAGCATGAAGGAGTAGGATAAAGTCTTCTGGCCGCACATTTCAGCACACCTTCTTCGCATTTTTGGTAYAGAATGGTGTAGTTGACTGGCATCTCACGAAAGCCGCGTTCGAATTCATCAATTTCCGAACATGATTGTCCTATTTCAATAATGTTGGACTAAATGTTCAAAAAACTTTCAAGCAGTTTCGAATTGGACACTCACATCTCGGAAACAAGAGAAAGCGTCTCCGTAAACTTTACTTCCAACGAAATCCGCTGCTTCAAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACATCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGTTTGACGCATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCTAACACCACTGGATCTC</pcr_primer_p1>
		<pcr_primer_p2>ATTGAAATAGGACAATCATGTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAATCTAACACCACTGGATCTCCGTTCATGAACTGTTGTCCCAGGAGTACCGATTGCATACCTACGTGAAAAGCTTGGTATAGGTGAACCAATCTCCCGATGGAGCATGAAGGAGTAGGATAAAGTCTTCTGGCCGCACATTTCAGCACACCTTCTTCGCATTTTTGGTATAGAATGGTGTAGTTGACTGGCATCTCACGAAAGCCGCGTTCGAATTCATCAATTTCCGAACATGATTGTCCTATTTCAAT</canonical_amplicon>
		<polymorphic_amplicon>AAATCTAACACCACTGGATCTCCGTTCATGAACTGTTGTCCCAGGAGTACCGATTGCATACCTACGTGAAAAGCTTGGTATAGGTGAACCAATCTCCCGATGGAGCATGAAGGAGTAGGATAAAGTCTTCTGGCCGCACATTTCAGCACACCTTCTTCGCATTTTTGGTAYAGAATGGTGTAGTTGACTGGCATCTCACGAAAGCCGCGTTCGAATTCATCAATTTCCGAACATGATTGTCCTATTTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8228</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>98885</contig_pos>
        <strand>+</strand>
        <context>AGGCCAAATA[A/G]ATGAAAACGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCCGAATTCATGTCTTAAACCTTTTAGAAGTTGGCTTTCAGGCCAAATA</left_flank>
        <right_flank>ATGAAAACGAAGAAGAAATAGCAAATAGCAGAATTAGAAGCACAGTTCGT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATCAATTTCCGAACATGATTGTCCTATTTCAATAATGTTGGACTAAATGTTCAAAAAACTTTCAAGCAGTTTCGAATTGGACACTCACATCTCGGAAACAAGAGAAAGCGTCTCCGTAAACTTTACTTCCAACGAAATCCGCTGCTTCAAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACATCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGTTTGACGCATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGAATTCATGTCTTAAACCTTTTAGAAGTTGGCTTTCAGGCCAAATAGATGAAAACGAAGAAGAAATAGCAAATAGCAGAATTAGAAGCACAGTTCGTACCATGTCTTCCTTTCTGATAAATGTTCCAACATTTAGGTTTTTATAGGCAAAAAATAGAAAAGCTTTTGTTTAGAACTATTGTTCGCATACAAACAAAATGATATGTATCTGAAGGTTTTTCATAATATTCTTTTCTGTTCATCATGATGATTCAAGTTTTTTCCGTTTGTTCTTCTATCCAGAAAAACAAACATTTTCAGGGCTTTTATACTTTCACAGTAACTGCCAAAATTTTTTTGGTATAGTCCTTTTGTTTTGAAAAAAATTTACTCATGTTTTTTGATGATTGGTAAATTTTTTCAGGCGCAGAAATACGAGCATCACTGCCGGTGTTTTCCGTTTGGCTCAACAATTGGTTTTTCAGTTACCCAAGTGATTTACTGGCAACCCGTTACGGATCTCCTATCATTTGCGCTTGATTGAGGTCAACTGTGACAGATCATCAGCG</canonical>
            <polymorphic>TCATCAATTTCCGAACATGATTGTCCTATTTCAATAATGTTGGACTAAATGTTCAAAAAACTTTCAAGCAGTTTCGAATTGGACACTCACATCTCGGAAACAAGAGAAAGCGTCTCCGTAAACTTTACTTCCAACGAAATCCGCTGCTTCAAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACATCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGTTTGACGCATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGAATTCATGTCTTAAACCTTTTAGAAGTTGGCTTTCAGGCCAAATARATGAAAACGAAGAAGAAATAGCAAATAGCAGAATTAGAAGCACAGTTCGTACCATGTCTTCCTTTCTGATAAATGTTCCAACATTTAGGTTTTTATAGGCAAAAAATAGAAAAGCTTTTGTTTAGAACTATTGTTCGCATACAAACAAAATGATATGTATCTGAAGGTTTTTCATAATATTCTTTTCTGTTCATCATGATGATTCAAGTTTTTTCCGTTTGTTCTTCTATCCAGAAAAACAAACATTTTCAGGGCTTTTATACTTTCACAGTAACTGCCAAAATTTTTTTGGTATAGTCCTTTTGTTTTGAAAAAAATTTACTCATGTTTTTTGATGATTGGTAAATTTTTTCAGGCGCAGAAATACGAGCATCACTGCCGGTGTTTTCCGTTTGGCTCAACAATTGGTTTTTCAGTTACCCAAGTGATTTACTGGCAACCCGTTACGGATCTCCTATCATTTGCGCTTGATTGAGGTCAACTGTGACAGATCATCAGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGAAACGATACATCAGATAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGCCTATAAAAACCTAAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGTTTGACGCATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGAATTCATGTCTTAAACCTTTTAGAAGTTGGCTTTCAGGCCAAATAGATGAAAACGAAGAAGAAATAGCAAATAGCAGAATTAGAAGCACAGTTCGTACCATGTCTTCCTTTCTGATAAATGTTCCAACATTTAGGTTTTTATAGGCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGTTTGACGCATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGAATTCATGTCTTAAACCTTTTAGAAGTTGGCTTTCAGGCCAAATARATGAAAACGAAGAAGAAATAGCAAATAGCAGAATTAGAAGCACAGTTCGTACCATGTCTTCCTTTCTGATAAATGTTCCAACATTTAGGTTTTTATAGGCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8229</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>98899</contig_pos>
        <strand>+</strand>
        <context>AAAACGAAGA[A/C]GAAATAGCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTAAACCTTTTAGAAGTTGGCTTTCAGGCCAAATAGATGAAAACGAAGA</left_flank>
        <right_flank>GAAATAGCAAATAGCAGAATTAGAAGCACAGTTCGTACCATGTCTTCCTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATGATTGTCCTATTTCAATAATGTTGGACTAAATGTTCAAAAAACTTTCAAGCAGTTTCGAATTGGACACTCACATCTCGGAAACAAGAGAAAGCGTCTCCGTAAACTTTACTTCCAACGAAATCCGCTGCTTCAAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACATCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGTTTGACGCATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGAATTCATGTCTTAAACCTTTTAGAAGTTGGCTTTCAGGCCAAATAGATGAAAACGAAGAAGAAATAGCAAATAGCAGAATTAGAAGCACAGTTCGTACCATGTCTTCCTTTCTGATAAATGTTCCAACATTTAGGTTTTTATAGGCAAAAAATAGAAAAGCTTTTGTTTAGAACTATTGTTCGCATACAAACAAAATGATATGTATCTGAAGGTTTTTCATAATATTCTTTTCTGTTCATCATGATGATTCAAGTTTTTTCCGTTTGTTCTTCTATCCAGAAAAACAAACATTTTCAGGGCTTTTATACTTTCACAGTAACTGCCAAAATTTTTTTGGTATAGTCCTTTTGTTTTGAAAAAAATTTACTCATGTTTTTTGATGATTGGTAAATTTTTTCAGGCGCAGAAATACGAGCATCACTGCCGGTGTTTTCCGTTTGGCTCAACAATTGGTTTTTCAGTTACCCAAGTGATTTACTGGCAACCCGTTACGGATCTCCTATCATTTGCGCTTGATTGAGGTCAACTGTGACAGATCATCAGCGACAACTTCTCGCTA</canonical>
            <polymorphic>ACATGATTGTCCTATTTCAATAATGTTGGACTAAATGTTCAAAAAACTTTCAAGCAGTTTCGAATTGGACACTCACATCTCGGAAACAAGAGAAAGCGTCTCCGTAAACTTTACTTCCAACGAAATCCGCTGCTTCAAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACATCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGTTTGACGCATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGAATTCATGTCTTAAACCTTTTAGAAGTTGGCTTTCAGGCCAAATAGATGAAAACGAAGAMGAAATAGCAAATAGCAGAATTAGAAGCACAGTTCGTACCATGTCTTCCTTTCTGATAAATGTTCCAACATTTAGGTTTTTATAGGCAAAAAATAGAAAAGCTTTTGTTTAGAACTATTGTTCGCATACAAACAAAATGATATGTATCTGAAGGTTTTTCATAATATTCTTTTCTGTTCATCATGATGATTCAAGTTTTTTCCGTTTGTTCTTCTATCCAGAAAAACAAACATTTTCAGGGCTTTTATACTTTCACAGTAACTGCCAAAATTTTTTTGGTATAGTCCTTTTGTTTTGAAAAAAATTTACTCATGTTTTTTGATGATTGGTAAATTTTTTCAGGCGCAGAAATACGAGCATCACTGCCGGTGTTTTCCGTTTGGCTCAACAATTGGTTTTTCAGTTACCCAAGTGATTTACTGGCAACCCGTTACGGATCTCCTATCATTTGCGCTTGATTGAGGTCAACTGTGACAGATCATCAGCGACAACTTCTCGCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGAAACGATACATCAGATAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGCCTATAAAAACCTAAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGTTTGACGCATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGAATTCATGTCTTAAACCTTTTAGAAGTTGGCTTTCAGGCCAAATAGATGAAAACGAAGAAGAAATAGCAAATAGCAGAATTAGAAGCACAGTTCGTACCATGTCTTCCTTTCTGATAAATGTTCCAACATTTAGGTTTTTATAGGCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGTTTGACGCATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGAATTCATGTCTTAAACCTTTTAGAAGTTGGCTTTCAGGCCAAATAGATGAAAACGAAGAMGAAATAGCAAATAGCAGAATTAGAAGCACAGTTCGTACCATGTCTTCCTTTCTGATAAATGTTCCAACATTTAGGTTTTTATAGGCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8230</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>98928</contig_pos>
        <strand>+</strand>
        <context>ATTAGAAGCA[C/G]AGTTCGTACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCAAATAGATGAAAACGAAGAAGAAATAGCAAATAGCAGAATTAGAAGCA</left_flank>
        <right_flank>AGTTCGTACCATGTCTTCCTTTCTGATAAATGTTCCAACATTTAGGTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTAAATGTTCAAAAAACTTTCAAGCAGTTTCGAATTGGACACTCACATCTCGGAAACAAGAGAAAGCGTCTCCGTAAACTTTACTTCCAACGAAATCCGCTGCTTCAAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACATCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGTTTGACGCATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGAATTCATGTCTTAAACCTTTTAGAAGTTGGCTTTCAGGCCAAATAGATGAAAACGAAGAAGAAATAGCAAATAGCAGAATTAGAAGCACAGTTCGTACCATGTCTTCCTTTCTGATAAATGTTCCAACATTTAGGTTTTTATAGGCAAAAAATAGAAAAGCTTTTGTTTAGAACTATTGTTCGCATACAAACAAAATGATATGTATCTGAAGGTTTTTCATAATATTCTTTTCTGTTCATCATGATGATTCAAGTTTTTTCCGTTTGTTCTTCTATCCAGAAAAACAAACATTTTCAGGGCTTTTATACTTTCACAGTAACTGCCAAAATTTTTTTGGTATAGTCCTTTTGTTTTGAAAAAAATTTACTCATGTTTTTTGATGATTGGTAAATTTTTTCAGGCGCAGAAATACGAGCATCACTGCCGGTGTTTTCCGTTTGGCTCAACAATTGGTTTTTCAGTTACCCAAGTGATTTACTGGCAACCCGTTACGGATCTCCTATCATTTGCGCTTGATTGAGGTCAACTGTGACAGATCATCAGCGACAACTTCTCGCTACCAAACATGAACATGTCAATTTTTGGTGG</canonical>
            <polymorphic>ACTAAATGTTCAAAAAACTTTCAAGCAGTTTCGAATTGGACACTCACATCTCGGAAACAAGAGAAAGCGTCTCCGTAAACTTTACTTCCAACGAAATCCGCTGCTTCAAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACATCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGTTTGACGCATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGAATTCATGTCTTAAACCTTTTAGAAGTTGGCTTTCAGGCCAAATAGATGAAAACGAAGAAGAAATAGCAAATAGCAGAATTAGAAGCASAGTTCGTACCATGTCTTCCTTTCTGATAAATGTTCCAACATTTAGGTTTTTATAGGCAAAAAATAGAAAAGCTTTTGTTTAGAACTATTGTTCGCATACAAACAAAATGATATGTATCTGAAGGTTTTTCATAATATTCTTTTCTGTTCATCATGATGATTCAAGTTTTTTCCGTTTGTTCTTCTATCCAGAAAAACAAACATTTTCAGGGCTTTTATACTTTCACAGTAACTGCCAAAATTTTTTTGGTATAGTCCTTTTGTTTTGAAAAAAATTTACTCATGTTTTTTGATGATTGGTAAATTTTTTCAGGCGCAGAAATACGAGCATCACTGCCGGTGTTTTCCGTTTGGCTCAACAATTGGTTTTTCAGTTACCCAAGTGATTTACTGGCAACCCGTTACGGATCTCCTATCATTTGCGCTTGATTGAGGTCAACTGTGACAGATCATCAGCGACAACTTCTCGCTACCAAACATGAACATGTCAATTTTTGGTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>359 226 213 142 60</canonical_bands>
                <polymorphic_bands>585 213 142 60</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>226 107 104 101 94 59 56 43 42 35 33 32 28 12 9 7 5 4 2 1</canonical_bands>
                <polymorphic_bands>330 107 101 94 59 56 43 42 35 33 32 28 12 9 7 5 4 2 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGAAACGATACATCAGATAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGCCTATAAAAACCTAAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGTTTGACGCATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGAATTCATGTCTTAAACCTTTTAGAAGTTGGCTTTCAGGCCAAATAGATGAAAACGAAGAAGAAATAGCAAATAGCAGAATTAGAAGCACAGTTCGTACCATGTCTTCCTTTCTGATAAATGTTCCAACATTTAGGTTTTTATAGGCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGTTTGACGCATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGAATTCATGTCTTAAACCTTTTAGAAGTTGGCTTTCAGGCCAAATAGATGAAAACGAAGAAGAAATAGCAAATAGCAGAATTAGAAGCASAGTTCGTACCATGTCTTCCTTTCTGATAAATGTTCCAACATTTAGGTTTTTATAGGCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8231</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>99138</contig_pos>
        <strand>+</strand>
        <context>ACATTTTCAG[A/G]GCTTTTATAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAAGTTTTTTCCGTTTGTTCTTCTATCCAGAAAAACAAACATTTTCAG</left_flank>
        <right_flank>GCTTTTATACTTTCACAGTAACTGCCAAAATTTTTTTGGTATAGTCCTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGTTTGACGCATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGAATTCATGTCTTAAACCTTTTAGAAGTTGGCTTTCAGGCCAAATAGATGAAAACGAAGAAGAAATAGCAAATAGCAGAATTAGAAGCACAGTTCGTACCATGTCTTCCTTTCTGATAAATGTTCCAACATTTAGGTTTTTATAGGCAAAAAATAGAAAAGCTTTTGTTTAGAACTATTGTTCGCATACAAACAAAATGATATGTATCTGAAGGTTTTTCATAATATTCTTTTCTGTTCATCATGATGATTCAAGTTTTTTCCGTTTGTTCTTCTATCCAGAAAAACAAACATTTTCAGGGCTTTTATACTTTCACAGTAACTGCCAAAATTTTTTTGGTATAGTCCTTTTGTTTTGAAAAAAATTTACTCATGTTTTTTGATGATTGGTAAATTTTTTCAGGCGCAGAAATACGAGCATCACTGCCGGTGTTTTCCGTTTGGCTCAACAATTGGTTTTTCAGTTACCCAAGTGATTTACTGGCAACCCGTTACGGATCTCCTATCATTTGCGCTTGATTGAGGTCAACTGTGACAGATCATCAGCGACAACTTCTCGCTACCAAACATGAACATGTCAATTTTTGGTGGTCAGTGGAAACAAGCATTTGCATTGGTAAGTTTAGTTTCTAAGAAATCTGAACAAGATGTGTTTAGTGCACGGAATAGAGGTTCTAGAAGAGGAGTTCTACTGGAACCCTCCCTGTCTGCTTGACACTCCCAATCAGGTCGTTTTTTTCATCGACTCATATACGTTATTTTTTTTGTTCTTTGAACCACCGTGTAAGCCATCCTGCTTAT</canonical>
            <polymorphic>TGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGTTTGACGCATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGAATTCATGTCTTAAACCTTTTAGAAGTTGGCTTTCAGGCCAAATAGATGAAAACGAAGAAGAAATAGCAAATAGCAGAATTAGAAGCACAGTTCGTACCATGTCTTCCTTTCTGATAAATGTTCCAACATTTAGGTTTTTATAGGCAAAAAATAGAAAAGCTTTTGTTTAGAACTATTGTTCGCATACAAACAAAATGATATGTATCTGAAGGTTTTTCATAATATTCTTTTCTGTTCATCATGATGATTCAAGTTTTTTCCGTTTGTTCTTCTATCCAGAAAAACAAACATTTTCAGRGCTTTTATACTTTCACAGTAACTGCCAAAATTTTTTTGGTATAGTCCTTTTGTTTTGAAAAAAATTTACTCATGTTTTTTGATGATTGGTAAATTTTTTCAGGCGCAGAAATACGAGCATCACTGCCGGTGTTTTCCGTTTGGCTCAACAATTGGTTTTTCAGTTACCCAAGTGATTTACTGGCAACCCGTTACGGATCTCCTATCATTTGCGCTTGATTGAGGTCAACTGTGACAGATCATCAGCGACAACTTCTCGCTACCAAACATGAACATGTCAATTTTTGGTGGTCAGTGGAAACAAGCATTTGCATTGGTAAGTTTAGTTTCTAAGAAATCTGAACAAGATGTGTTTAGTGCACGGAATAGAGGTTCTAGAAGAGGAGTTCTACTGGAACCCTCCCTGTCTGCTTGACACTCCCAATCAGGTCGTTTTTTTCATCGACTCATATACGTTATTTTTTTTGTTCTTTGAACCACCGTGTAAGCCATCCTGCTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>344 231 142 140 122 13 8</canonical_bands>
                <polymorphic_bands>344 282 231 122 13 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTTCCAACATTTAGGTTTTTA</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAACAAAAGGACTATACCA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>ATGTTCCAACATTTAGGTTTTTATAGGCAAAAAATAGAAAAGCTTTTGTTTAGAACTATTGTTCGCATACAAACAAAATGATATGTATCTGAAGGTTTTTCATAATATTCTTTTCTGTTCATCATGATGATTCAAGTTTTTTCCGTTTGTTCTTCTATCCAGAAAAACAAACATTTTCAGGGCTTTTATACTTTCACAGTAACTGCCAAAATTTTTTTGGTATAGTCCTTTTGTTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>ATGTTCCAACATTTAGGTTTTTATAGGCAAAAAATAGAAAAGCTTTTGTTTAGAACTATTGTTCGCATACAAACAAAATGATATGTATCTGAAGGTTTTTCATAATATTCTTTTCTGTTCATCATGATGATTCAAGTTTTTTCCGTTTGTTCTTCTATCCAGAAAAACAAACATTTTCAGRGCTTTTATACTTTCACAGTAACTGCCAAAATTTTTTTGGTATAGTCCTTTTGTTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8232</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>99202</contig_pos>
        <strand>+</strand>
        <context>TTTGAAAAAA[A/T]TTTACTCATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CACAGTAACTGCCAAAATTTTTTTGGTATAGTCCTTTTGTTTTGAAAAAA</left_flank>
        <right_flank>TTTACTCATGTTTTTTGATGATTGGTAAATTTTTTCAGGCGCAGAAATAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGTTTGACGCATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGAATTCATGTCTTAAACCTTTTAGAAGTTGGCTTTCAGGCCAAATAGATGAAAACGAAGAAGAAATAGCAAATAGCAGAATTAGAAGCACAGTTCGTACCATGTCTTCCTTTCTGATAAATGTTCCAACATTTAGGTTTTTATAGGCAAAAAATAGAAAAGCTTTTGTTTAGAACTATTGTTCGCATACAAACAAAATGATATGTATCTGAAGGTTTTTCATAATATTCTTTTCTGTTCATCATGATGATTCAAGTTTTTTCCGTTTGTTCTTCTATCCAGAAAAACAAACATTTTCAGGGCTTTTATACTTTCACAGTAACTGCCAAAATTTTTTTGGTATAGTCCTTTTGTTTTGAAAAAAATTTACTCATGTTTTTTGATGATTGGTAAATTTTTTCAGGCGCAGAAATACGAGCATCACTGCCGGTGTTTTCCGTTTGGCTCAACAATTGGTTTTTCAGTTACCCAAGTGATTTACTGGCAACCCGTTACGGATCTCCTATCATTTGCGCTTGATTGAGGTCAACTGTGACAGATCATCAGCGACAACTTCTCGCTACCAAACATGAACATGTCAATTTTTGGTGGTCAGTGGAAACAAGCATTTGCATTGGTAAGTTTAGTTTCTAAGAAATCTGAACAAGATGTGTTTAGTGCACGGAATAGAGGTTCTAGAAGAGGAGTTCTACTGGAACCCTCCCTGTCTGCTTGACACTCCCAATCAGGTCGTTTTTTTCATCGACTCATATACGTTATTTTTTTTGTTCTTTGAACCACCGTGTAAGCCATCCTGCTTATTTCAACATCAATTTGAATTTCTTTCAAATGTCTTAGTTGCCCTTTTATTGATGATTCAAAACGT</canonical>
            <polymorphic>TTTATTGTTACATATATATAAGAATAATCGATCGATATGAGAAACGATACATCAGATAAACGATTTTACTCACTTCGTGTGGTTTGACGCATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGAATTCATGTCTTAAACCTTTTAGAAGTTGGCTTTCAGGCCAAATAGATGAAAACGAAGAAGAAATAGCAAATAGCAGAATTAGAAGCACAGTTCGTACCATGTCTTCCTTTCTGATAAATGTTCCAACATTTAGGTTTTTATAGGCAAAAAATAGAAAAGCTTTTGTTTAGAACTATTGTTCGCATACAAACAAAATGATATGTATCTGAAGGTTTTTCATAATATTCTTTTCTGTTCATCATGATGATTCAAGTTTTTTCCGTTTGTTCTTCTATCCAGAAAAACAAACATTTTCAGGGCTTTTATACTTTCACAGTAACTGCCAAAATTTTTTTGGTATAGTCCTTTTGTTTTGAAAAAAWTTTACTCATGTTTTTTGATGATTGGTAAATTTTTTCAGGCGCAGAAATACGAGCATCACTGCCGGTGTTTTCCGTTTGGCTCAACAATTGGTTTTTCAGTTACCCAAGTGATTTACTGGCAACCCGTTACGGATCTCCTATCATTTGCGCTTGATTGAGGTCAACTGTGACAGATCATCAGCGACAACTTCTCGCTACCAAACATGAACATGTCAATTTTTGGTGGTCAGTGGAAACAAGCATTTGCATTGGTAAGTTTAGTTTCTAAGAAATCTGAACAAGATGTGTTTAGTGCACGGAATAGAGGTTCTAGAAGAGGAGTTCTACTGGAACCCTCCCTGTCTGCTTGACACTCCCAATCAGGTCGTTTTTTTCATCGACTCATATACGTTATTTTTTTTGTTCTTTGAACCACCGTGTAAGCCATCCTGCTTATTTCAACATCAATTTGAATTTCTTTCAAATGTCTTAGTTGCCCTTTTATTGATGATTCAAAACGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>424 327 98 49 39 34 29</canonical_bands>
                <polymorphic_bands>424 327 98 63 49 39</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>250 231 129 98 77 58 49 39 34 29 6</canonical_bands>
                <polymorphic_bands>250 231 129 98 77 63 58 49 39 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCTTCTATCCAGAAAAACAAA</pcr_primer_p1>
		<pcr_primer_p2>CAAATGATAGGAGATCCGTAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GTTCTTCTATCCAGAAAAACAAACATTTTCAGGGCTTTTATACTTTCACAGTAACTGCCAAAATTTTTTTGGTATAGTCCTTTTGTTTTGAAAAAAATTTACTCATGTTTTTTGATGATTGGTAAATTTTTTCAGGCGCAGAAATACGAGCATCACTGCCGGTGTTTTCCGTTTGGCTCAACAATTGGTTTTTCAGTTACCCAAGTGATTTACTGGCAACCCGTTACGGATCTCCTATCATTTG</canonical_amplicon>
		<polymorphic_amplicon>GTTCTTCTATCCAGAAAAACAAACATTTTCAGGGCTTTTATACTTTCACAGTAACTGCCAAAATTTTTTTGGTATAGTCCTTTTGTTTTGAAAAAAWTTTACTCATGTTTTTTGATGATTGGTAAATTTTTTCAGGCGCAGAAATACGAGCATCACTGCCGGTGTTTTCCGTTTGGCTCAACAATTGGTTTTTCAGTTACCCAAGTGATTTACTGGCAACCCGTTACGGATCTCCTATCATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8233</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>99292</contig_pos>
        <strand>+</strand>
        <context>CTCAACAATT[G/T]GTTTTTCAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGCAGAAATACGAGCATCACTGCCGGTGTTTTCCGTTTGGCTCAACAATT</left_flank>
        <right_flank>GTTTTTCAGTTACCCAAGTGATTTACTGGCAACCCGTTACGGATCTCCTA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGAATTCATGTCTTAAACCTTTTAGAAGTTGGCTTTCAGGCCAAATAGATGAAAACGAAGAAGAAATAGCAAATAGCAGAATTAGAAGCACAGTTCGTACCATGTCTTCCTTTCTGATAAATGTTCCAACATTTAGGTTTTTATAGGCAAAAAATAGAAAAGCTTTTGTTTAGAACTATTGTTCGCATACAAACAAAATGATATGTATCTGAAGGTTTTTCATAATATTCTTTTCTGTTCATCATGATGATTCAAGTTTTTTCCGTTTGTTCTTCTATCCAGAAAAACAAACATTTTCAGGGCTTTTATACTTTCACAGTAACTGCCAAAATTTTTTTGGTATAGTCCTTTTGTTTTGAAAAAAATTTACTCATGTTTTTTGATGATTGGTAAATTTTTTCAGGCGCAGAAATACGAGCATCACTGCCGGTGTTTTCCGTTTGGCTCAACAATTGGTTTTTCAGTTACCCAAGTGATTTACTGGCAACCCGTTACGGATCTCCTATCATTTGCGCTTGATTGAGGTCAACTGTGACAGATCATCAGCGACAACTTCTCGCTACCAAACATGAACATGTCAATTTTTGGTGGTCAGTGGAAACAAGCATTTGCATTGGTAAGTTTAGTTTCTAAGAAATCTGAACAAGATGTGTTTAGTGCACGGAATAGAGGTTCTAGAAGAGGAGTTCTACTGGAACCCTCCCTGTCTGCTTGACACTCCCAATCAGGTCGTTTTTTTCATCGACTCATATACGTTATTTTTTTTGTTCTTTGAACCACCGTGTAAGCCATCCTGCTTATTTCAACATCAATTTGAATTTCTTTCAAATGTCTTAGTTGCCCTTTTATTGATGATTCAAAACGTCTTAAGAATTCGAAAAAATATTATTTTTTAAAAATTGTCTTTATTTCGAAATAGTGAAAAAATTATCAAAAACTTGATTTTGAAGTCTTC</canonical>
            <polymorphic>ATTCATTGAATTTCGTTACTTCCGTGGAACACTCAGGGGATTGTCCGAATTCATGTCTTAAACCTTTTAGAAGTTGGCTTTCAGGCCAAATAGATGAAAACGAAGAAGAAATAGCAAATAGCAGAATTAGAAGCACAGTTCGTACCATGTCTTCCTTTCTGATAAATGTTCCAACATTTAGGTTTTTATAGGCAAAAAATAGAAAAGCTTTTGTTTAGAACTATTGTTCGCATACAAACAAAATGATATGTATCTGAAGGTTTTTCATAATATTCTTTTCTGTTCATCATGATGATTCAAGTTTTTTCCGTTTGTTCTTCTATCCAGAAAAACAAACATTTTCAGGGCTTTTATACTTTCACAGTAACTGCCAAAATTTTTTTGGTATAGTCCTTTTGTTTTGAAAAAAATTTACTCATGTTTTTTGATGATTGGTAAATTTTTTCAGGCGCAGAAATACGAGCATCACTGCCGGTGTTTTCCGTTTGGCTCAACAATTKGTTTTTCAGTTACCCAAGTGATTTACTGGCAACCCGTTACGGATCTCCTATCATTTGCGCTTGATTGAGGTCAACTGTGACAGATCATCAGCGACAACTTCTCGCTACCAAACATGAACATGTCAATTTTTGGTGGTCAGTGGAAACAAGCATTTGCATTGGTAAGTTTAGTTTCTAAGAAATCTGAACAAGATGTGTTTAGTGCACGGAATAGAGGTTCTAGAAGAGGAGTTCTACTGGAACCCTCCCTGTCTGCTTGACACTCCCAATCAGGTCGTTTTTTTCATCGACTCATATACGTTATTTTTTTTGTTCTTTGAACCACCGTGTAAGCCATCCTGCTTATTTCAACATCAATTTGAATTTCTTTCAAATGTCTTAGTTGCCCTTTTATTGATGATTCAAAACGTCTTAAGAATTCGAAAAAATATTATTTTTTAAAAATTGTCTTTATTTCGAAATAGTGAAAAAATTATCAAAAACTTGATTTTGAAGTCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGGTATAGTCCTTTTGTTTTG</pcr_primer_p1>
		<pcr_primer_p2>ATTGACATGTTCATGTTTGGTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTGGTATAGTCCTTTTGTTTTGAAAAAAATTTACTCATGTTTTTTGATGATTGGTAAATTTTTTCAGGCGCAGAAATACGAGCATCACTGCCGGTGTTTTCCGTTTGGCTCAACAATTGGTTTTTCAGTTACCCAAGTGATTTACTGGCAACCCGTTACGGATCTCCTATCATTTGCGCTTGATTGAGGTCAACTGTGACAGATCATCAGCGACAACTTCTCGCTACCAAACATGAACATGTCAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTGGTATAGTCCTTTTGTTTTGAAAAAAATTTACTCATGTTTTTTGATGATTGGTAAATTTTTTCAGGCGCAGAAATACGAGCATCACTGCCGGTGTTTTCCGTTTGGCTCAACAATTKGTTTTTCAGTTACCCAAGTGATTTACTGGCAACCCGTTACGGATCTCCTATCATTTGCGCTTGATTGAGGTCAACTGTGACAGATCATCAGCGACAACTTCTCGCTACCAAACATGAACATGTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8234</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>99380</contig_pos>
        <strand></strand>
        <context>TGACAGATCA[T/G]CAGCGACAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TACGGATCTCCTATCATTTGCGCTTGATTGAGGTCAACTGTGACAGATCA</left_flank>
        <right_flank>CAGCGACAACTTCTCGCTACCAAACATGAACATGTCAATTTTTGGTGGTC</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAGATGAAAACGAAGAAGAAATAGCAAATAGCAGAATTAGAAGCACAGTTCGTACCATGTCTTCCTTTCTGATAAATGTTCCAACATTTAGGTTTTTATAGGCAAAAAATAGAAAAGCTTTTGTTTAGAACTATTGTTCGCATACAAACAAAATGATATGTATCTGAAGGTTTTTCATAATATTCTTTTCTGTTCATCATGATGATTCAAGTTTTTTCCGTTTGTTCTTCTATCCAGAAAAACAAACATTTTCAGGGCTTTTATACTTTCACAGTAACTGCCAAAATTTTTTTGGTATAGTCCTTTTGTTTTGAAAAAAATTTACTCATGTTTTTTGATGATTGGTAAATTTTTTCAGGCGCAGAAATACGAGCATCACTGCCGGTGTTTTCCGTTTGGCTCAACAATTGGTTTTTCAGTTACCCAAGTGATTTACTGGCAACCCGTTACGGATCTCCTATCATTTGCGCTTGATTGAGGTCAACTGTGACAGATCATCAGCGACAACTTCTCGCTACCAAACATGAACATGTCAATTTTTGGTGGTCAGTGGAAACAAGCATTTGCATTGGTAAGTTTAGTTTCTAAGAAATCTGAACAAGATGTGTTTAGTGCACGGAATAGAGGTTCTAGAAGAGGAGTTCTACTGGAACCCTCCCTGTCTGCTTGACACTCCCAATCAGGTCGTTTTTTTCATCGACTCATATACGTTATTTTTTTTGTTCTTTGAACCACCGTGTAAGCCATCCTGCTTATTTCAACATCAATTTGAATTTCTTTCAAATGTCTTAGTTGCCCTTTTATTGATGATTCAAAACGTCTTAAGAATTCGAAAAAATATTATTTTTTAAAAATTGTCTTTATTTCGAAATAGTGAAAAAATTATCAAAAACTTGATTTTGAAGTCTTCTCAATTGTTGCAATACTTTGACGCACCAAAATCTAACAAGACCGGATGTCCCTCCATAAACTGTTCTACAAGAAATGCCGATTCCATA</canonical>
            <polymorphic>AATAGATGAAAACGAAGAAGAAATAGCAAATAGCAGAATTAGAAGCACAGTTCGTACCATGTCTTCCTTTCTGATAAATGTTCCAACATTTAGGTTTTTATAGGCAAAAAATAGAAAAGCTTTTGTTTAGAACTATTGTTCGCATACAAACAAAATGATATGTATCTGAAGGTTTTTCATAATATTCTTTTCTGTTCATCATGATGATTCAAGTTTTTTCCGTTTGTTCTTCTATCCAGAAAAACAAACATTTTCAGGGCTTTTATACTTTCACAGTAACTGCCAAAATTTTTTTGGTATAGTCCTTTTGTTTTGAAAAAAATTTACTCATGTTTTTTGATGATTGGTAAATTTTTTCAGGCGCAGAAATACGAGCATCACTGCCGGTGTTTTCCGTTTGGCTCAACAATTGGTTTTTCAGTTACCCAAGTGATTTACTGGCAACCCGTTACGGATCTCCTATCATTTGCGCTTGATTGAGGTCAACTGTGACAGATCAKCAGCGACAACTTCTCGCTACCAAACATGAACATGTCAATTTTTGGTGGTCAGTGGAAACAAGCATTTGCATTGGTAAGTTTAGTTTCTAAGAAATCTGAACAAGATGTGTTTAGTGCACGGAATAGAGGTTCTAGAAGAGGAGTTCTACTGGAACCCTCCCTGTCTGCTTGACACTCCCAATCAGGTCGTTTTTTTCATCGACTCATATACGTTATTTTTTTTGTTCTTTGAACCACCGTGTAAGCCATCCTGCTTATTTCAACATCAATTTGAATTTCTTTCAAATGTCTTAGTTGCCCTTTTATTGATGATTCAAAACGTCTTAAGAATTCGAAAAAATATTATTTTTTAAAAATTGTCTTTATTTCGAAATAGTGAAAAAATTATCAAAAACTTGATTTTGAAGTCTTCTCAATTGTTGCAATACTTTGACGCACCAAAATCTAACAAGACCGGATGTCCCTCCATAAACTGTTCTACAAGAAATGCCGATTCCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGTTACCCAAGTGATTTAC</pcr_primer_p1>
		<pcr_primer_p2>GGTTCCAGTAGAACTCCTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGTTACCCAAGTGATTTACTGGCAACCCGTTACGGATCTCCTATCATTTGCGCTTGATTGAGGTCAACTGTGACAGATCATCAGCGACAACTTCTCGCTACCAAACATGAACATGTCAATTTTTGGTGGTCAGTGGAAACAAGCATTTGCATTGGTAAGTTTAGTTTCTAAGAAATCTGAACAAGATGTGTTTAGTGCACGGAATAGAGGTTCTAGAAGAGGAGTTCTACTGGAACC</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGTTACCCAAGTGATTTACTGGCAACCCGTTACGGATCTCCTATCATTTGCGCTTGATTGAGGTCAACTGTGACAGATCAKCAGCGACAACTTCTCGCTACCAAACATGAACATGTCAATTTTTGGTGGTCAGTGGAAACAAGCATTTGCATTGGTAAGTTTAGTTTCTAAGAAATCTGAACAAGATGTGTTTAGTGCACGGAATAGAGGTTCTAGAAGAGGAGTTCTACTGGAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8246</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>107581</contig_pos>
        <strand>+</strand>
        <context>gtttCTTCTA[A/G]AAAAACTACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACTTTTTGACTGAATTTCTTTCAGAATATTCCGATTTTTGTTTCTTCTA</left_flank>
        <right_flank>AAAAACTACAGTTCAAAATGAGCAACACTATTCGAATATACTCATGTACT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATACTCCAAACTGAAAAAAATCAGAAGTTTCTTGTTCATTCAATGTTTGAGAAATGAGGCCAAAAGAAAAACTAACTTTACAAATTTTGTTCCCCCGAACTGTGGATTTTGTACTCCTAAATCACACCCTCTGTTATGACAGTTCAGAAAGTTCAGAAACACGACGTTTCAGAAGGCAACGTTTCAGAAACATGAGTACATGAGTATATTCAAATCAGTATTGCTCATTTTGAACTAGTTTTTATGGCAGATACTCACTAGTTTGACGATTCTTTACTACATGCTCGTTTGCTAAATAGAGGGCTTGTTCAAATTGAACGTTTCGACTGAAACTGGTTACCGGGAAACAGACGTTTTAGCCAAAGCCTAAAATACTAAACAAAAACCGGAATATTTTGGGAAAAAAAATTCAAAAAGTGGAAATTTTGCTGTTATTTGTGAATTTCAGTACTTTTTGACTGAATTTCTTTCAGAATATTCCGATTTTTGTTTCTTCTAAAAAAACTACAGTTCAAAATGAGCAACACTATTCGAATATACTCATGTACTCATGTTTCTGAAACGTTGCCTTCTGAAACGTCGTGTTACTGTCGGGGTCTGAAACGTCGGATTCTGAATGTCGATTTCAGAAACGTCGTGTTTCTGAAACGCCGCATTCTAAAACGCCCAGGAGCCGAGGTGAATTGTGATATGAATTGTGTTTGATGGTGGGTGAATTTTTAAAATATGAAATTAGAGTGAGAGAGACACAGACATAAAGAGAAAAATGCTTCCAGTTATTATCATCTTCCTCAAACTAGCTCCAATCCCAAAAGTTTTTAGGTTATTTAGCTATTCGGGTGTCTAGGATTCAACTAATTTATTTCAGAGTCGCGAAAATGGAAAAACCACAAAACGCTACATCAAAGTGACCAAACAGGAGCGTATTCTCAAGTAAATCATTCGTAATAGAGCAAGACCGCACACCATGAGAAGAGCGTTCATTGTTGCCAACAATTA</canonical>
            <polymorphic>TATACTCCAAACTGAAAAAAATCAGAAGTTTCTTGTTCATTCAATGTTTGAGAAATGAGGCCAAAAGAAAAACTAACTTTACAAATTTTGTTCCCCCGAACTGTGGATTTTGTACTCCTAAATCACACCCTCTGTTATGACAGTTCAGAAAGTTCAGAAACACGACGTTTCAGAAGGCAACGTTTCAGAAACATGAGTACATGAGTATATTCAAATCAGTATTGCTCATTTTGAACTAGTTTTTATGGCAGATACTCACTAGTTTGACGATTCTTTACTACATGCTCGTTTGCTAAATAGAGGGCTTGTTCAAATTGAACGTTTCGACTGAAACTGGTTACCGGGAAACAGACGTTTTAGCCAAAGCCTAAAATACTAAACAAAAACCGGAATATTTTGGGAAAAAAAATTCAAAAAGTGGAAATTTTGCTGTTATTTGTGAATTTCAGTACTTTTTGACTGAATTTCTTTCAGAATATTCCGATTTTTGTTTCTTCTARAAAAACTACAGTTCAAAATGAGCAACACTATTCGAATATACTCATGTACTCATGTTTCTGAAACGTTGCCTTCTGAAACGTCGTGTTACTGTCGGGGTCTGAAACGTCGGATTCTGAATGTCGATTTCAGAAACGTCGTGTTTCTGAAACGCCGCATTCTAAAACGCCCAGGAGCCGAGGTGAATTGTGATATGAATTGTGTTTGATGGTGGGTGAATTTTTAAAATATGAAATTAGAGTGAGAGAGACACAGACATAAAGAGAAAAATGCTTCCAGTTATTATCATCTTCCTCAAACTAGCTCCAATCCCAAAAGTTTTTAGGTTATTTAGCTATTCGGGTGTCTAGGATTCAACTAATTTATTTCAGAGTCGCGAAAATGGAAAAACCACAAAACGCTACATCAAAGTGACCAAACAGGAGCGTATTCTCAAGTAAATCATTCGTAATAGAGCAAGACCGCACACCATGAGAAGAGCGTTCATTGTTGCCAACAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGTACATGAGTATATTCAAATCAG</pcr_primer_p1>
		<pcr_primer_p2>ACAATTCATATCACAATTCACCT</pcr_primer_p2>
		<pcr_amplicon_size>507</pcr_amplicon_size>
		<canonical_amplicon>TGAGTACATGAGTATATTCAAATCAGTATTGCTCATTTTGAACTAGTTTTTATGGCAGATACTCACTAGTTTGACGATTCTTTACTACATGCTCGTTTGCTAAATAGAGGGCTTGTTCAAATTGAACGTTTCGACTGAAACTGGTTACCGGGAAACAGACGTTTTAGCCAAAGCCTAAAATACTAAACAAAAACCGGAATATTTTGGGAAAAAAAATTCAAAAAGTGGAAATTTTGCTGTTATTTGTGAATTTCAGTACTTTTTGACTGAATTTCTTTCAGAATATTCCGATTTTTGTTTCTTCTAAAAAAACTACAGTTCAAAATGAGCAACACTATTCGAATATACTCATGTACTCATGTTTCTGAAACGTTGCCTTCTGAAACGTCGTGTTACTGTCGGGGTCTGAAACGTCGGATTCTGAATGTCGATTTCAGAAACGTCGTGTTTCTGAAACGCCGCATTCTAAAACGCCCAGGAGCCGAGGTGAATTGTGATATGAATTGT</canonical_amplicon>
		<polymorphic_amplicon>TGAGTACATGAGTATATTCAAATCAGTATTGCTCATTTTGAACTAGTTTTTATGGCAGATACTCACTAGTTTGACGATTCTTTACTACATGCTCGTTTGCTAAATAGAGGGCTTGTTCAAATTGAACGTTTCGACTGAAACTGGTTACCGGGAAACAGACGTTTTAGCCAAAGCCTAAAATACTAAACAAAAACCGGAATATTTTGGGAAAAAAAATTCAAAAAGTGGAAATTTTGCTGTTATTTGTGAATTTCAGTACTTTTTGACTGAATTTCTTTCAGAATATTCCGATTTTTGTTTCTTCTARAAAAACTACAGTTCAAAATGAGCAACACTATTCGAATATACTCATGTACTCATGTTTCTGAAACGTTGCCTTCTGAAACGTCGTGTTACTGTCGGGGTCTGAAACGTCGGATTCTGAATGTCGATTTCAGAAACGTCGTGTTTCTGAAACGCCGCATTCTAAAACGCCCAGGAGCCGAGGTGAATTGTGATATGAATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8247</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>121783</contig_pos>
        <strand>+</strand>
        <context>GCTAAACGGG[A/G]GATCATCTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCTCTTATAGGATAAACTGTGACACAGATAAAATAATGGCTAAACGGG</left_flank>
        <right_flank>GATCATCTGAACTAAAATATTTCTAGTACATACAGTTGTCATAGGCAGTT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAACGATAAATAGAACAGGTGTTCCTAGCTTTTGATAACTAGCTGGCAGTTTTTAGATCTTCACCGAAAATTTTGAAATTTTTTTGAATTACTGAAAATGGCTCAACAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTTTCTCTCTCTTTCTCTCTCTCTCTTTCTCTCTCTTTCTCGGTGTACCTGACATACTTTTACAAAAATTCTAGAATTGACCAGAAAAAATTATATACAAGAATAGAAAAAAATTCGATGCCATCCATATTCGCATTCTCGAATGAAGGATTTGGAAGCAATCTAAGGAAACGAGAAAAATGAATTGAAAAAACGAAAATGAATTCGAATGCCCGAATCGAAGGAAGACGACGGATTGTGACGTAGGGTGAGCAACAGATAGATTTATTATATCCTCATTTCGTTTCTCTTTCTCTTATAGGATAAACTGTGACACAGATAAAATAATGGCTAAACGGGAGATCATCTGAACTAAAATATTTCTAGTACATACAGTTGTCATAGGCAGTTGACAGACGTCAGACAATAATCGCTTAATTTCGGGGGTAATGTGAAACTAAAGAGTTCAGATGCTGAGTTTTGAATTCGATTAGCTAAGTGTTCTGTTATTCATCTCATCCATCTGACATTGGAATGTTTTCCTACTAGAAAAATACTGAAGAGTTGTCGAGGGGAGGCAGATTTTTTATAGATATTAAAAATGACACCGTAAACATTAATAGTTTGACCCCAAACCGTTAACTTTGAGCTTATATGTCTTATTTTCTGTGGAAGATATCGAAAAGTGGTCAACTGACAAAATGTTTATCATAATATCAAAAGTATTCTGTTTGTTAACCACTTTTTGATATCTTTCACAAGAACCAAGGTAAATCAAATCAAAGTTAAAAGTCAAGGTGGTCATTCTATACAGTTTTACGGTAACTCTGACTGTTCAAAAAATATAGTGAACTTTGTTTA</canonical>
            <polymorphic>CAAAAACGATAAATAGAACAGGTGTTCCTAGCTTTTGATAACTAGCTGGCAGTTTTTAGATCTTCACCGAAAATTTTGAAATTTTTTTGAATTACTGAAAATGGCTCAACAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTTTCTCTCTCTTTCTCTCTCTCTCTTTCTCTCTCTTTCTCGGTGTACCTGACATACTTTTACAAAAATTCTAGAATTGACCAGAAAAAATTATATACAAGAATAGAAAAAAATTCGATGCCATCCATATTCGCATTCTCGAATGAAGGATTTGGAAGCAATCTAAGGAAACGAGAAAAATGAATTGAAAAAACGAAAATGAATTCGAATGCCCGAATCGAAGGAAGACGACGGATTGTGACGTAGGGTGAGCAACAGATAGATTTATTATATCCTCATTTCGTTTCTCTTTCTCTTATAGGATAAACTGTGACACAGATAAAATAATGGCTAAACGGGRGATCATCTGAACTAAAATATTTCTAGTACATACAGTTGTCATAGGCAGTTGACAGACGTCAGACAATAATCGCTTAATTTCGGGGGTAATGTGAAACTAAAGAGTTCAGATGCTGAGTTTTGAATTCGATTAGCTAAGTGTTCTGTTATTCATCTCATCCATCTGACATTGGAATGTTTTCCTACTAGAAAAATACTGAAGAGTTGTCGAGGGGAGGCAGATTTTTTATAGATATTAAAAATGACACCGTAAACATTAATAGTTTGACCCCAAACCGTTAACTTTGAGCTTATATGTCTTATTTTCTGTGGAAGATATCGAAAAGTGGTCAACTGACAAAATGTTTATCATAATATCAAAAGTATTCTGTTTGTTAACCACTTTTTGATATCTTTCACAAGAACCAAGGTAAATCAAATCAAAGTTAAAAGTCAAGGTGGTCATTCTATACAGTTTTACGGTAACTCTGACTGTTCAAAAAATATAGTGAACTTTGTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGAGAAAAATGAATTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAATTAAGCGATTATTGTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACGAGAAAAATGAATTGAAAAAACGAAAATGAATTCGAATGCCCGAATCGAAGGAAGACGACGGATTGTGACGTAGGGTGAGCAACAGATAGATTTATTATATCCTCATTTCGTTTCTCTTTCTCTTATAGGATAAACTGTGACACAGATAAAATAATGGCTAAACGGGAGATCATCTGAACTAAAATATTTCTAGTACATACAGTTGTCATAGGCAGTTGACAGACGTCAGACAATAATCGCTTAATTTC</canonical_amplicon>
		<polymorphic_amplicon>ACGAGAAAAATGAATTGAAAAAACGAAAATGAATTCGAATGCCCGAATCGAAGGAAGACGACGGATTGTGACGTAGGGTGAGCAACAGATAGATTTATTATATCCTCATTTCGTTTCTCTTTCTCTTATAGGATAAACTGTGACACAGATAAAATAATGGCTAAACGGGRGATCATCTGAACTAAAATATTTCTAGTACATACAGTTGTCATAGGCAGTTGACAGACGTCAGACAATAATCGCTTAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8248</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>146026</contig_pos>
        <strand></strand>
        <context>TTTTCTTTGT[G/A]TTTTCTTAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGTTTTGCTTTCTGGGAGAACCTTCAAACTTTTTTAGAAATTTTCTTTGT</left_flank>
        <right_flank>TTTTCTTAAATCTATGATTTTTAGGATCTTCCGTCAGTCAAGATGTACAG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAAACCATTTTTTCAATATATCTGCGTCTCTCATTGTCCCTCCCAGCTTTTGTTTTCCCAATAGAAGATATTAGTGATATGGTTTGGAAAAACACATAGACATACAGAAGCAGAGGAAATTAGTCATTCCCACAATGCTCGTGGAGGAGGGTGGAAGACGACCATTGGAGGAAAGAAGAATGACTATGATGATATACAGTCACCATTGAGAGAGTGTAAAATCTTTTACGAATAGTTTCCTGTGTCCCTCTTTTCTAATTTTCATTGATTTATTATAGGAACCTCTCTTTTTTTTTCCTTTTTTGTTGGCCTAGTAAAAGGAGAAAAGGCTAGACAATTCGTTATATCCCCCGCTCTTTTTTATATCTATTCACAGTTCTTAATGTTATTGGTCTGAAAGTCTGTTGACAACGTCATTTTCAGCAGAAACATAAAGCACTAGTTGATTGTTTTGCTTTCTGGGAGAACCTTCAAACTTTTTTAGAAATTTTCTTTGTGTTTTCTTAAATCTATGATTTTTAGGATCTTCCGTCAGTCAAGATGTACAGCTCATCAAGACCAACATCATCAGACCAACAACCACAATCAATGGAGCTTGGAAAGTATGAGGTAAGGAATTCAGATGGATATTTTTATTGGCTACCGTAACCTCTCATATAGAATTCTCCTCAGACTGTTAACTTTGAGCTTATATATGTATCTGATTTTCTGTAAAAGATATCGAAAAGTTGTCAACTGACAAAATGTTCTTCAATTTTTAGGTCATTTTGAAATGGTGGCTTAACTTTTGGAAACTGAATTTTCGGCTCTTTTCTAGTTTAGAGGTCCTAAAAAAGAATAGAGGTCCCAAAAAAACTTAAGGTCCCAAAATAAAATTGAGGTCCCAAAAAAAGTTAGAGGTCCCAAGAAAAAATAAAGGCCCAAAACTTAAAAATGCACATATGCTGGAATAACGTACTAGAATTTAAATTGTGTAAGAAATTAAAGTTTTGAGGTCT</canonical>
            <polymorphic>TTCAAACCATTTTTTCAATATATCTGCGTCTCTCATTGTCCCTCCCAGCTTTTGTTTTCCCAATAGAAGATATTAGTGATATGGTTTGGAAAAACACATAGACATACAGAAGCAGAGGAAATTAGTCATTCCCACAATGCTCGTGGAGGAGGGTGGAAGACGACCATTGGAGGAAAGAAGAATGACTATGATGATATACAGTCACCATTGAGAGAGTGTAAAATCTTTTACGAATAGTTTCCTGTGTCCCTCTTTTCTAATTTTCATTGATTTATTATAGGAACCTCTCTTTTTTTTTCCTTTTTTGTTGGCCTAGTAAAAGGAGAAAAGGCTAGACAATTCGTTATATCCCCCGCTCTTTTTTATATCTATTCACAGTTCTTAATGTTATTGGTCTGAAAGTCTGTTGACAACGTCATTTTCAGCAGAAACATAAAGCACTAGTTGATTGTTTTGCTTTCTGGGAGAACCTTCAAACTTTTTTAGAAATTTTCTTTGTRTTTTCTTAAATCTATGATTTTTAGGATCTTCCGTCAGTCAAGATGTACAGCTCATCAAGACCAACATCATCAGACCAACAACCACAATCAATGGAGCTTGGAAAGTATGAGGTAAGGAATTCAGATGGATATTTTTATTGGCTACCGTAACCTCTCATATAGAATTCTCCTCAGACTGTTAACTTTGAGCTTATATATGTATCTGATTTTCTGTAAAAGATATCGAAAAGTTGTCAACTGACAAAATGTTCTTCAATTTTTAGGTCATTTTGAAATGGTGGCTTAACTTTTGGAAACTGAATTTTCGGCTCTTTTCTAGTTTAGAGGTCCTAAAAAAGAATAGAGGTCCCAAAAAAACTTAAGGTCCCAAAATAAAATTGAGGTCCCAAAAAAAGTTAGAGGTCCCAAGAAAAAATAAAGGCCCAAAACTTAAAAATGCACATATGCTGGAATAACGTACTAGAATTTAAATTGTGTAAGAAATTAAAGTTTTGAGGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>196 160 129 84 78 65 60 49 38 36 28 24 18 14 11 10</canonical_bands>
                <polymorphic_bands>196 160 144 129 78 65 49 38 36 28 24 18 14 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGTTATTGGTCTGAAAGTCTG</pcr_primer_p1>
		<pcr_primer_p2>ATATCCATCTGAATTCCTTACCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATGTTATTGGTCTGAAAGTCTGTTGACAACGTCATTTTCAGCAGAAACATAAAGCACTAGTTGATTGTTTTGCTTTCTGGGAGAACCTTCAAACTTTTTTAGAAATTTTCTTTGTGTTTTCTTAAATCTATGATTTTTAGGATCTTCCGTCAGTCAAGATGTACAGCTCATCAAGACCAACATCATCAGACCAACAACCACAATCAATGGAGCTTGGAAAGTATGAGGTAAGGAATTCAGATGGATAT</canonical_amplicon>
		<polymorphic_amplicon>AATGTTATTGGTCTGAAAGTCTGTTGACAACGTCATTTTCAGCAGAAACATAAAGCACTAGTTGATTGTTTTGCTTTCTGGGAGAACCTTCAAACTTTTTTAGAAATTTTCTTTGTRTTTTCTTAAATCTATGATTTTTAGGATCTTCCGTCAGTCAAGATGTACAGCTCATCAAGACCAACATCATCAGACCAACAACCACAATCAATGGAGCTTGGAAAGTATGAGGTAAGGAATTCAGATGGATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8249</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>104910</contig_pos>
        <strand></strand>
        <context>CGGGATTCTG[G/A]AGAAAATTYT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GCATCGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTG</left_flank>
        <right_flank>AGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTCTGCGTCCTCCCCCTCCCCCTCTCTCTCGCTTTCCCTCTCTTTCTTATACGACAACGCGCCCTCTTTTGTTGTCTGCGGCCGTGGTGTAGAGGTCGACGCTCTTGCCCACCGTGAAGAAGTCCGGGGGTTCGACTCCCCGGTGGGGTAAAACCTTTTTTTCTTTTGTTATAGGGTAGGGATACACAAATAAGTGACTAGAAAGGAAGTTTATGCAATTTCAGTGCCAAAATTGTTCAAAATTTAGAAAATTTTCCAAGAAAGACCCGATTTTTCAAGTCCAGCTAAATTCTGATAATTAAAACTACCGTAACCCAGTCAGTTTTTGTCCAAACTTAGAATTTCTTATATTTTTGAACTCAGCAAGCAAAGACGGTTCGAATGAGTATAATCATGGCTAGTTTTAAAATTTGAAGTTTTTCAGATTTTTTTTGAAATTTCCAGATGGCATCGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAG</canonical>
            <polymorphic>TTCTCTGCGTCCTCCCCCTCCCCCTCTCTCTCGCTTTCCCTCTCTTTCTTATACGACAACGCGCCCTCTTTTGTTGTCTGCGGCCGTGGTGTAGAGGTCGACGCTCTTGCCCACCGTGAAGAAGTCCGGGGGTTCGACTCCCCGGTGGGGTAAAACCTTTTTTTCTTTTGTTATAGGGTAGGGATACACAAATAAGTGACTAGAAAGGAAGTTTATGCAATTTCAGTGCCAAAATTGTTCAAAATTTAGAAAATTTTCCAAGAAAGACCCGATTTTTCAAGTCCAGCTAAATTCTGATAATTAAAACTACCGTAACCCAGTCAGTTTTTGTCCAAACTTAGAATTTCTTATATTTTTGAACTCAGCAAGCAAAGACGGTTCGAATGAGTATAATCATGGCTAGTTTTAAAATTTGAAGTTTTTCAGATTTTTTTTGAAATTTCCAGATGGCATCGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGRAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>443 208 190 69 54 36</canonical_bands>
                <polymorphic_bands>443 244 208 69 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGACCCGATTTTTCAAGTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATACCTGAATTGGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>290</pcr_amplicon_size>
		<canonical_amplicon>AAGACCCGATTTTTCAAGTCCAGCTAAATTCTGATAATTAAAACTACCGTAACCCAGTCAGTTTTTGTCCAAACTTAGAATTTCTTATATTTTTGAACTCAGCAAGCAAAGACGGTTCGAATGAGTATAATCATGGCTAGTTTTAAAATTTGAAGTTTTTCAGATTTTTTTTGAAATTTCCAGATGGCATCGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAGACCCGATTTTTCAAGTCCAGCTAAATTCTGATAATTAAAACTACCGTAACCCAGTCAGTTTTTGTCCAAACTTAGAATTTCTTATATTTTTGAACTCAGCAAGCAAAGACGGTTCGAATGAGTATAATCATGGCTAGTTTTAAAATTTGAAGTTTTTCAGATTTTTTTTGAAATTTCCAGATGGCATCGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGRAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8250</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>104919</contig_pos>
        <strand></strand>
        <context>GRAGAAAATT[C/T]TTGCACAGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATT</left_flank>
        <right_flank>TTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAA</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTCCCCCTCCCCCTCTCTCTCGCTTTCCCTCTCTTTCTTATACGACAACGCGCCCTCTTTTGTTGTCTGCGGCCGTGGTGTAGAGGTCGACGCTCTTGCCCACCGTGAAGAAGTCCGGGGGTTCGACTCCCCGGTGGGGTAAAACCTTTTTTTCTTTTGTTATAGGGTAGGGATACACAAATAAGTGACTAGAAAGGAAGTTTATGCAATTTCAGTGCCAAAATTGTTCAAAATTTAGAAAATTTTCCAAGAAAGACCCGATTTTTCAAGTCCAGCTAAATTCTGATAATTAAAACTACCGTAACCCAGTCAGTTTTTGTCCAAACTTAGAATTTCTTATATTTTTGAACTCAGCAAGCAAAGACGGTTCGAATGAGTATAATCATGGCTAGTTTTAAAATTTGAAGTTTTTCAGATTTTTTTTGAAATTTCCAGATGGCATCGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAAT</canonical>
            <polymorphic>TCCTCCCCCTCCCCCTCTCTCTCGCTTTCCCTCTCTTTCTTATACGACAACGCGCCCTCTTTTGTTGTCTGCGGCCGTGGTGTAGAGGTCGACGCTCTTGCCCACCGTGAAGAAGTCCGGGGGTTCGACTCCCCGGTGGGGTAAAACCTTTTTTTCTTTTGTTATAGGGTAGGGATACACAAATAAGTGACTAGAAAGGAAGTTTATGCAATTTCAGTGCCAAAATTGTTCAAAATTTAGAAAATTTTCCAAGAAAGACCCGATTTTTCAAGTCCAGCTAAATTCTGATAATTAAAACTACCGTAACCCAGTCAGTTTTTGTCCAAACTTAGAATTTCTTATATTTTTGAACTCAGCAAGCAAAGACGGTTCGAATGAGTATAATCATGGCTAGTTTTAAAATTTGAAGTTTTTCAGATTTTTTTTGAAATTTCCAGATGGCATCGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTYTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>233 148 78 77 68 67 60 58 52 38 28 27 15 14 13 9 9 6</canonical_bands>
                <polymorphic_bands>233 148 145 77 68 60 58 52 38 28 27 15 14 13 9 9 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTCGTCGTCATTTTGAAT</pcr_primer_p1>
		<pcr_primer_p2>CGAATGAACTTAAGCACTGAG</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>TCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCG</canonical_amplicon>
		<polymorphic_amplicon>TCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTYTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8251</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>105025</contig_pos>
        <strand></strand>
        <context>TTTTTTAAAA[A/T]WTGCTTATCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAA</left_flank>
        <right_flank>TTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGAAGAAGTCCGGGGGTTCGACTCCCCGGTGGGGTAAAACCTTTTTTTCTTTTGTTATAGGGTAGGGATACACAAATAAGTGACTAGAAAGGAAGTTTATGCAATTTCAGTGCCAAAATTGTTCAAAATTTAGAAAATTTTCCAAGAAAGACCCGATTTTTCAAGTCCAGCTAAATTCTGATAATTAAAACTACCGTAACCCAGTCAGTTTTTGTCCAAACTTAGAATTTCTTATATTTTTGAACTCAGCAAGCAAAGACGGTTCGAATGAGTATAATCATGGCTAGTTTTAAAATTTGAAGTTTTTCAGATTTTTTTTGAAATTTCCAGATGGCATCGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTGG</canonical>
            <polymorphic>GTGAAGAAGTCCGGGGGTTCGACTCCCCGGTGGGGTAAAACCTTTTTTTCTTTTGTTATAGGGTAGGGATACACAAATAAGTGACTAGAAAGGAAGTTTATGCAATTTCAGTGCCAAAATTGTTCAAAATTTAGAAAATTTTCCAAGAAAGACCCGATTTTTCAAGTCCAGCTAAATTCTGATAATTAAAACTACCGTAACCCAGTCAGTTTTTGTCCAAACTTAGAATTTCTTATATTTTTGAACTCAGCAAGCAAAGACGGTTCGAATGAGTATAATCATGGCTAGTTTTAAAATTTGAAGTTTTTCAGATTTTTTTTGAAATTTCCAGATGGCATCGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAWTTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>137 103 85 68 67 63 60 44 43 38 38 36 34 28 15 14 14 13 12 11 11 10 9 9 9 9 8 6 6</canonical_bands>
                <polymorphic_bands>148 103 85 68 67 63 60 44 43 38 38 36 34 28 15 14 14 13 12 11 10 9 9 9 9 8 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAATTCAGGTATTTTTCAAC</pcr_primer_p1>
		<pcr_primer_p2>ACTGACATCAGAAGAACAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGT</canonical_amplicon>
		<polymorphic_amplicon>ACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAWTTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8252</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>105026</contig_pos>
        <strand></strand>
        <context>TTTTTAAAAW[T/A]TGCTTATCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAA</left_flank>
        <right_flank>TGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAGAAGTCCGGGGGTTCGACTCCCCGGTGGGGTAAAACCTTTTTTTCTTTTGTTATAGGGTAGGGATACACAAATAAGTGACTAGAAAGGAAGTTTATGCAATTTCAGTGCCAAAATTGTTCAAAATTTAGAAAATTTTCCAAGAAAGACCCGATTTTTCAAGTCCAGCTAAATTCTGATAATTAAAACTACCGTAACCCAGTCAGTTTTTGTCCAAACTTAGAATTTCTTATATTTTTGAACTCAGCAAGCAAAGACGGTTCGAATGAGTATAATCATGGCTAGTTTTAAAATTTGAAGTTTTTCAGATTTTTTTTGAAATTTCCAGATGGCATCGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTGGT</canonical>
            <polymorphic>TGAAGAAGTCCGGGGGTTCGACTCCCCGGTGGGGTAAAACCTTTTTTTCTTTTGTTATAGGGTAGGGATACACAAATAAGTGACTAGAAAGGAAGTTTATGCAATTTCAGTGCCAAAATTGTTCAAAATTTAGAAAATTTTCCAAGAAAGACCCGATTTTTCAAGTCCAGCTAAATTCTGATAATTAAAACTACCGTAACCCAGTCAGTTTTTGTCCAAACTTAGAATTTCTTATATTTTTGAACTCAGCAAGCAAAGACGGTTCGAATGAGTATAATCATGGCTAGTTTTAAAATTTGAAGTTTTTCAGATTTTTTTTGAAATTTCCAGATGGCATCGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAAWTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>137 102 85 68 67 63 60 44 43 38 38 37 34 28 15 14 14 13 12 11 11 10 9 9 9 9 8 6 6</canonical_bands>
                <polymorphic_bands>148 102 85 68 67 63 60 44 43 38 38 37 34 28 15 14 14 13 12 11 10 9 9 9 9 8 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAATTCAGGTATTTTTCAAC</pcr_primer_p1>
		<pcr_primer_p2>ACTGACATCAGAAGAACAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGT</canonical_amplicon>
		<polymorphic_amplicon>ACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAAWTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8253</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>105089</contig_pos>
        <strand></strand>
        <context>GTTGTCTAAA[C/T]GGCTCTTCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAA</left_flank>
        <right_flank>GGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGGATACACAAATAAGTGACTAGAAAGGAAGTTTATGCAATTTCAGTGCCAAAATTGTTCAAAATTTAGAAAATTTTCCAAGAAAGACCCGATTTTTCAAGTCCAGCTAAATTCTGATAATTAAAACTACCGTAACCCAGTCAGTTTTTGTCCAAACTTAGAATTTCTTATATTTTTGAACTCAGCAAGCAAAGACGGTTCGAATGAGTATAATCATGGCTAGTTTTAAAATTTGAAGTTTTTCAGATTTTTTTTGAAATTTCCAGATGGCATCGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTGGTGAATTGACCAAGCTGGAATTCAACATTGGCGTTCTCTTTAAACCTATTTGTCTTCTAGAAGCT</canonical>
            <polymorphic>AGGGATACACAAATAAGTGACTAGAAAGGAAGTTTATGCAATTTCAGTGCCAAAATTGTTCAAAATTTAGAAAATTTTCCAAGAAAGACCCGATTTTTCAAGTCCAGCTAAATTCTGATAATTAAAACTACCGTAACCCAGTCAGTTTTTGTCCAAACTTAGAATTTCTTATATTTTTGAACTCAGCAAGCAAAGACGGTTCGAATGAGTATAATCATGGCTAGTTTTAAAATTTGAAGTTTTTCAGATTTTTTTTGAAATTTCCAGATGGCATCGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAAYGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTGGTGAATTGACCAAGCTGGAATTCAACATTGGCGTTCTCTTTAAACCTATTTGTCTTCTAGAAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCAATTCAGGTATTTTTCAAC</pcr_primer_p1>
		<pcr_primer_p2>ACTGACATCAGAAGAACAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGT</canonical_amplicon>
		<polymorphic_amplicon>ACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAAYGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8254</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>105205</contig_pos>
        <strand></strand>
        <context>TCAGTTTCCA[G/A]AAGAGGTCCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCA</left_flank>
        <right_flank>AAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATAATTAAAACTACCGTAACCCAGTCAGTTTTTGTCCAAACTTAGAATTTCTTATATTTTTGAACTCAGCAAGCAAAGACGGTTCGAATGAGTATAATCATGGCTAGTTTTAAAATTTGAAGTTTTTCAGATTTTTTTTGAAATTTCCAGATGGCATCGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTGGTGAATTGACCAAGCTGGAATTCAACATTGGCGTTCTCTTTAAACCTATTTGTCTTCTAGAAGCTCGTTGCTCATTCACATCCCACTGATAGCCGCCGGTTGATAGGCGGCTCACAAGCGGCTCACGGAAGTTTGGGCCAGAAGTCGCTGGAATCGCAGGAAAAGCACCCTGTAAATATGA</canonical>
            <polymorphic>GATAATTAAAACTACCGTAACCCAGTCAGTTTTTGTCCAAACTTAGAATTTCTTATATTTTTGAACTCAGCAAGCAAAGACGGTTCGAATGAGTATAATCATGGCTAGTTTTAAAATTTGAAGTTTTTCAGATTTTTTTTGAAATTTCCAGATGGCATCGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCARAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTGGTGAATTGACCAAGCTGGAATTCAACATTGGCGTTCTCTTTAAACCTATTTGTCTTCTAGAAGCTCGTTGCTCATTCACATCCCACTGATAGCCGCCGGTTGATAGGCGGCTCACAAGCGGCTCACGGAAGTTTGGGCCAGAAGTCGCTGGAATCGCAGGAAAAGCACCCTGTAAATATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>379 190 148 124 69 54 36</canonical_bands>
                <polymorphic_bands>415 190 148 124 69 54</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATTCGATCGATTCTCATC</pcr_primer_p1>
		<pcr_primer_p2>CAATCGATATTCCGACTAGGTA</pcr_primer_p2>
		<pcr_amplicon_size>401</pcr_amplicon_size>
		<canonical_amplicon>TCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTG</canonical_amplicon>
		<polymorphic_amplicon>TCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCARAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8255</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>105234</contig_pos>
        <strand></strand>
        <context>CATTCAATAA[A/G]AAATTTRARA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAA</left_flank>
        <right_flank>AAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGTCCAAACTTAGAATTTCTTATATTTTTGAACTCAGCAAGCAAAGACGGTTCGAATGAGTATAATCATGGCTAGTTTTAAAATTTGAAGTTTTTCAGATTTTTTTTGAAATTTCCAGATGGCATCGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTGGTGAATTGACCAAGCTGGAATTCAACATTGGCGTTCTCTTTAAACCTATTTGTCTTCTAGAAGCTCGTTGCTCATTCACATCCCACTGATAGCCGCCGGTTGATAGGCGGCTCACAAGCGGCTCACGGAAGTTTGGGCCAGAAGTCGCTGGAATCGCAGGAAAAGCACCCTGTAAATATGACCATTCGATTTGGCATGAAATTAGCTTCA</canonical>
            <polymorphic>TTTTTGTCCAAACTTAGAATTTCTTATATTTTTGAACTCAGCAAGCAAAGACGGTTCGAATGAGTATAATCATGGCTAGTTTTAAAATTTGAAGTTTTTCAGATTTTTTTTGAAATTTCCAGATGGCATCGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAARAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTGGTGAATTGACCAAGCTGGAATTCAACATTGGCGTTCTCTTTAAACCTATTTGTCTTCTAGAAGCTCGTTGCTCATTCACATCCCACTGATAGCCGCCGGTTGATAGGCGGCTCACAAGCGGCTCACGGAAGTTTGGGCCAGAAGTCGCTGGAATCGCAGGAAAAGCACCCTGTAAATATGACCATTCGATTTGGCATGAAATTAGCTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGTTCTTCTGATGTCAGTTTC</pcr_primer_p1>
		<pcr_primer_p2>CAATCGATATTCCGACTAGGTA</pcr_primer_p2>
		<pcr_amplicon_size>345</pcr_amplicon_size>
		<canonical_amplicon>CTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTG</canonical_amplicon>
		<polymorphic_amplicon>CTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAARAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8256</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>105241</contig_pos>
        <strand></strand>
        <context>TAARAAATTT[G/A]ARAAATTTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTT</left_flank>
        <right_flank>AAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAACTTAGAATTTCTTATATTTTTGAACTCAGCAAGCAAAGACGGTTCGAATGAGTATAATCATGGCTAGTTTTAAAATTTGAAGTTTTTCAGATTTTTTTTGAAATTTCCAGATGGCATCGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTGGTGAATTGACCAAGCTGGAATTCAACATTGGCGTTCTCTTTAAACCTATTTGTCTTCTAGAAGCTCGTTGCTCATTCACATCCCACTGATAGCCGCCGGTTGATAGGCGGCTCACAAGCGGCTCACGGAAGTTTGGGCCAGAAGTCGCTGGAATCGCAGGAAAAGCACCCTGTAAATATGACCATTCGATTTGGCATGAAATTAGCTTCAAAATGAG</canonical>
            <polymorphic>CCAAACTTAGAATTTCTTATATTTTTGAACTCAGCAAGCAAAGACGGTTCGAATGAGTATAATCATGGCTAGTTTTAAAATTTGAAGTTTTTCAGATTTTTTTTGAAATTTCCAGATGGCATCGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTRAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTGGTGAATTGACCAAGCTGGAATTCAACATTGGCGTTCTCTTTAAACCTATTTGTCTTCTAGAAGCTCGTTGCTCATTCACATCCCACTGATAGCCGCCGGTTGATAGGCGGCTCACAAGCGGCTCACGGAAGTTTGGGCCAGAAGTCGCTGGAATCGCAGGAAAAGCACCCTGTAAATATGACCATTCGATTTGGCATGAAATTAGCTTCAAAATGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGTTCTTCTGATGTCAGTTTC</pcr_primer_p1>
		<pcr_primer_p2>CAATCGATATTCCGACTAGGTA</pcr_primer_p2>
		<pcr_amplicon_size>345</pcr_amplicon_size>
		<canonical_amplicon>CTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTG</canonical_amplicon>
		<polymorphic_amplicon>CTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTRAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8257</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>105243</contig_pos>
        <strand></strand>
        <context>ARAAATTTRA[A/G]AAATTTTAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGA</left_flank>
        <right_flank>AAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTTAGAATTTCTTATATTTTTGAACTCAGCAAGCAAAGACGGTTCGAATGAGTATAATCATGGCTAGTTTTAAAATTTGAAGTTTTTCAGATTTTTTTTGAAATTTCCAGATGGCATCGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTGGTGAATTGACCAAGCTGGAATTCAACATTGGCGTTCTCTTTAAACCTATTTGTCTTCTAGAAGCTCGTTGCTCATTCACATCCCACTGATAGCCGCCGGTTGATAGGCGGCTCACAAGCGGCTCACGGAAGTTTGGGCCAGAAGTCGCTGGAATCGCAGGAAAAGCACCCTGTAAATATGACCATTCGATTTGGCATGAAATTAGCTTCAAAATGAGTA</canonical>
            <polymorphic>AAACTTAGAATTTCTTATATTTTTGAACTCAGCAAGCAAAGACGGTTCGAATGAGTATAATCATGGCTAGTTTTAAAATTTGAAGTTTTTCAGATTTTTTTTGAAATTTCCAGATGGCATCGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGARAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTGGTGAATTGACCAAGCTGGAATTCAACATTGGCGTTCTCTTTAAACCTATTTGTCTTCTAGAAGCTCGTTGCTCATTCACATCCCACTGATAGCCGCCGGTTGATAGGCGGCTCACAAGCGGCTCACGGAAGTTTGGGCCAGAAGTCGCTGGAATCGCAGGAAAAGCACCCTGTAAATATGACCATTCGATTTGGCATGAAATTAGCTTCAAAATGAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGTTCTTCTGATGTCAGTTTC</pcr_primer_p1>
		<pcr_primer_p2>CAATCGATATTCCGACTAGGTA</pcr_primer_p2>
		<pcr_amplicon_size>345</pcr_amplicon_size>
		<canonical_amplicon>CTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTG</canonical_amplicon>
		<polymorphic_amplicon>CTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGARAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8258</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>105273</contig_pos>
        <strand></strand>
        <context>ATAAGAATCC[G/A]ATRAAAACTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCC</left_flank>
        <right_flank>ATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCAAGCAAAGACGGTTCGAATGAGTATAATCATGGCTAGTTTTAAAATTTGAAGTTTTTCAGATTTTTTTTGAAATTTCCAGATGGCATCGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTGGTGAATTGACCAAGCTGGAATTCAACATTGGCGTTCTCTTTAAACCTATTTGTCTTCTAGAAGCTCGTTGCTCATTCACATCCCACTGATAGCCGCCGGTTGATAGGCGGCTCACAAGCGGCTCACGGAAGTTTGGGCCAGAAGTCGCTGGAATCGCAGGAAAAGCACCCTGTAAATATGACCATTCGATTTGGCATGAAATTAGCTTCAAAATGAGTATAAACACGACTAGGTTAGAAATTTTTTGAA</canonical>
            <polymorphic>AGCAAGCAAAGACGGTTCGAATGAGTATAATCATGGCTAGTTTTAAAATTTGAAGTTTTTCAGATTTTTTTTGAAATTTCCAGATGGCATCGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCRATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTGGTGAATTGACCAAGCTGGAATTCAACATTGGCGTTCTCTTTAAACCTATTTGTCTTCTAGAAGCTCGTTGCTCATTCACATCCCACTGATAGCCGCCGGTTGATAGGCGGCTCACAAGCGGCTCACGGAAGTTTGGGCCAGAAGTCGCTGGAATCGCAGGAAAAGCACCCTGTAAATATGACCATTCGATTTGGCATGAAATTAGCTTCAAAATGAGTATAAACACGACTAGGTTAGAAATTTTTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>313 261 105 82 81 62 54 32 10</canonical_bands>
                <polymorphic_bands>313 261 163 105 62 54 32 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGCTGTAAAACATTCAATAA</pcr_primer_p1>
		<pcr_primer_p2>CAATCGATATTCCGACTAGGTA</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTG</canonical_amplicon>
		<polymorphic_amplicon>CCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCRATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8259</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>105276</contig_pos>
        <strand></strand>
        <context>AGAATCCRAT[A/G]AAAACTGYTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGAT</left_flank>
        <right_flank>AAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCAAAGACGGTTCGAATGAGTATAATCATGGCTAGTTTTAAAATTTGAAGTTTTTCAGATTTTTTTTGAAATTTCCAGATGGCATCGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTGGTGAATTGACCAAGCTGGAATTCAACATTGGCGTTCTCTTTAAACCTATTTGTCTTCTAGAAGCTCGTTGCTCATTCACATCCCACTGATAGCCGCCGGTTGATAGGCGGCTCACAAGCGGCTCACGGAAGTTTGGGCCAGAAGTCGCTGGAATCGCAGGAAAAGCACCCTGTAAATATGACCATTCGATTTGGCATGAAATTAGCTTCAAAATGAGTATAAACACGACTAGGTTAGAAATTTTTTGAAAAT</canonical>
            <polymorphic>AAGCAAAGACGGTTCGAATGAGTATAATCATGGCTAGTTTTAAAATTTGAAGTTTTTCAGATTTTTTTTGAAATTTCCAGATGGCATCGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATRAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTGGTGAATTGACCAAGCTGGAATTCAACATTGGCGTTCTCTTTAAACCTATTTGTCTTCTAGAAGCTCGTTGCTCATTCACATCCCACTGATAGCCGCCGGTTGATAGGCGGCTCACAAGCGGCTCACGGAAGTTTGGGCCAGAAGTCGCTGGAATCGCAGGAAAAGCACCCTGTAAATATGACCATTCGATTTGGCATGAAATTAGCTTCAAAATGAGTATAAACACGACTAGGTTAGAAATTTTTTGAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGCTGTAAAACATTCAATAA</pcr_primer_p1>
		<pcr_primer_p2>CAATCGATATTCCGACTAGGTA</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTG</canonical_amplicon>
		<polymorphic_amplicon>CCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATRAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8260</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>105284</contig_pos>
        <strand></strand>
        <context>ATRAAAACTG[T/C]TGaagttatg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTG</left_flank>
        <right_flank>TGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGGTTCGAATGAGTATAATCATGGCTAGTTTTAAAATTTGAAGTTTTTCAGATTTTTTTTGAAATTTCCAGATGGCATCGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTGGTGAATTGACCAAGCTGGAATTCAACATTGGCGTTCTCTTTAAACCTATTTGTCTTCTAGAAGCTCGTTGCTCATTCACATCCCACTGATAGCCGCCGGTTGATAGGCGGCTCACAAGCGGCTCACGGAAGTTTGGGCCAGAAGTCGCTGGAATCGCAGGAAAAGCACCCTGTAAATATGACCATTCGATTTGGCATGAAATTAGCTTCAAAATGAGTATAAACACGACTAGGTTAGAAATTTTTTGAAAATTTTATTTT</canonical>
            <polymorphic>ACGGTTCGAATGAGTATAATCATGGCTAGTTTTAAAATTTGAAGTTTTTCAGATTTTTTTTGAAATTTCCAGATGGCATCGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGYTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTGGTGAATTGACCAAGCTGGAATTCAACATTGGCGTTCTCTTTAAACCTATTTGTCTTCTAGAAGCTCGTTGCTCATTCACATCCCACTGATAGCCGCCGGTTGATAGGCGGCTCACAAGCGGCTCACGGAAGTTTGGGCCAGAAGTCGCTGGAATCGCAGGAAAAGCACCCTGTAAATATGACCATTCGATTTGGCATGAAATTAGCTTCAAAATGAGTATAAACACGACTAGGTTAGAAATTTTTTGAAAATTTTATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>502 356 139 3</canonical_bands>
                <polymorphic_bands>858 139 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGCTGTAAAACATTCAATAA</pcr_primer_p1>
		<pcr_primer_p2>CAATCGATATTCCGACTAGGTA</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTG</canonical_amplicon>
		<polymorphic_amplicon>CCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGYTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8261</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>105317</contig_pos>
        <strand></strand>
        <context>ttgtccaaaa[A/T]ttttttttca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAA</left_flank>
        <right_flank>TTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATTTGAAGTTTTTCAGATTTTTTTTGAAATTTCCAGATGGCATCGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTGGTGAATTGACCAAGCTGGAATTCAACATTGGCGTTCTCTTTAAACCTATTTGTCTTCTAGAAGCTCGTTGCTCATTCACATCCCACTGATAGCCGCCGGTTGATAGGCGGCTCACAAGCGGCTCACGGAAGTTTGGGCCAGAAGTCGCTGGAATCGCAGGAAAAGCACCCTGTAAATATGACCATTCGATTTGGCATGAAATTAGCTTCAAAATGAGTATAAACACGACTAGGTTAGAAATTTTTTGAAAATTTTATTTTTCCTGTCGAGACCCAAATTTTTGAAATTTTCAA</canonical>
            <polymorphic>AAAATTTGAAGTTTTTCAGATTTTTTTTGAAATTTCCAGATGGCATCGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAWTTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTGGTGAATTGACCAAGCTGGAATTCAACATTGGCGTTCTCTTTAAACCTATTTGTCTTCTAGAAGCTCGTTGCTCATTCACATCCCACTGATAGCCGCCGGTTGATAGGCGGCTCACAAGCGGCTCACGGAAGTTTGGGCCAGAAGTCGCTGGAATCGCAGGAAAAGCACCCTGTAAATATGACCATTCGATTTGGCATGAAATTAGCTTCAAAATGAGTATAAACACGACTAGGTTAGAAATTTTTTGAAAATTTTATTTTTCCTGTCGAGACCCAAATTTTTGAAATTTTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>220 148 85 78 77 67 60 58 53 28 26 15 14 13 12 11 9 9 9 6 2</canonical_bands>
                <polymorphic_bands>220 148 135 85 78 67 60 53 28 26 15 14 13 12 11 9 9 9 6 2</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>181 137 85 67 63 60 44 39 38 38 34 28 26 15 15 14 13 12 11 11 11 9 9 9 9 8 6 6 2</canonical_bands>
                <polymorphic_bands>181 137 85 74 67 60 44 39 38 38 34 28 26 15 15 14 13 12 11 11 9 9 9 9 8 6 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGCTGTAAAACATTCAATAA</pcr_primer_p1>
		<pcr_primer_p2>CAATCGATATTCCGACTAGGTA</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTG</canonical_amplicon>
		<polymorphic_amplicon>CCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAWTTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8262</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>107927</contig_pos>
        <strand>+</strand>
        <context>GAAAGGGGGG[A/G]CCCGCTTGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGCCTAAATTCGGATCTTCAAAATTTGTTAAATCCCGAAAGAAAGGGGGG</left_flank>
        <right_flank>CCCGCTTGGTTTCCATCGTCCAAAGGGCGGTCCATTGTGTGGGAACACAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCGGTTCTGTCGAAAATTTTGACACCTGTGCCTTTAAATTTCTCTACAGTAGCCTGAAATTCAATTTTGGTATTTTTCGCGCATTTTTCGGCAATTTTCAATGATTTTTTTGTCATTTTCATTAGATTTTACTCTAAAAATTTCATTTTTACAAAAAAAAACCTAAAAATTGTGAATTTCATAAAAAATTTTCGACACCTGCGCCTTTAAATTTTTCCTACAGTAACCCGAAAATTTCGTTTTTTATCGATTTTTTTCTAGCGGCGAACGTTTTTCGCTAATTTTTTCACAGATTTTTCTCATTATTAAATGCGAAAAATTCAGAAAAAAAAGAATTTCAGAAAAAATGACATCTCCAGAAAAATCGATAAAATTGGAGCCGGATGACGAGGCGGATAATGGGGATTACGGTACAAATGGAGAAGGACCATCGGCAGAGATGCATTTAGGCCTAAATTCGGATCTTCAAAATTTGTTAAATCCCGAAAGAAAGGGGGGACCCGCTTGGTTTCCATCGTCCAAAGGGCGGTCCATTGTGTGGGAACACATCACTTGGGTCACTGAGACGCAGAGAGCCGCCTGTAATTACTGTAGCGCTGAATTTCAGATAAAGGGTACGGTAGAAAATTTGGGGAAAAATTTTTTTTGAAAATTTTCAAAAAAAAATTTTTTTTAGAAAATTTTTTTTTTCAAAATTTCAAAATTTTTTCTACAGTACCCCTTTATCATTCCAGGCGGTACCTCAGCACTTTTACGTCATCTGAAAACCAATCACCCCGCCGCCATCAATTTCGACCCCGAAAATCCGCCGCCAATCGTTCGAAGAAAGAAGAAGAAGACGATGGAAGGTAAGAAGTGTTCAATAGAGCGCGATTGCAGATTTTTGAAATTTGAAATTTTTGAAAAAAAATTCAATGGAGCGAAGTTGCGAAAAAAAATTTTGAAAAATTAAAAAAAAAATTTTTTAAAATATTTTCAGATTACACCATCGTCACCGAG</canonical>
            <polymorphic>AGCGGTTCTGTCGAAAATTTTGACACCTGTGCCTTTAAATTTCTCTACAGTAGCCTGAAATTCAATTTTGGTATTTTTCGCGCATTTTTCGGCAATTTTCAATGATTTTTTTGTCATTTTCATTAGATTTTACTCTAAAAATTTCATTTTTACAAAAAAAAACCTAAAAATTGTGAATTTCATAAAAAATTTTCGACACCTGCGCCTTTAAATTTTTCCTACAGTAACCCGAAAATTTCGTTTTTTATCGATTTTTTTCTAGCGGCGAACGTTTTTCGCTAATTTTTTCACAGATTTTTCTCATTATTAAATGCGAAAAATTCAGAAAAAAAAGAATTTCAGAAAAAATGACATCTCCAGAAAAATCGATAAAATTGGAGCCGGATGACGAGGCGGATAATGGGGATTACGGTACAAATGGAGAAGGACCATCGGCAGAGATGCATTTAGGCCTAAATTCGGATCTTCAAAATTTGTTAAATCCCGAAAGAAAGGGGGGRCCCGCTTGGTTTCCATCGTCCAAAGGGCGGTCCATTGTGTGGGAACACATCACTTGGGTCACTGAGACGCAGAGAGCCGCCTGTAATTACTGTAGCGCTGAATTTCAGATAAAGGGTACGGTAGAAAATTTGGGGAAAAATTTTTTTTGAAAATTTTCAAAAAAAAATTTTTTTTAGAAAATTTTTTTTTTCAAAATTTCAAAATTTTTTCTACAGTACCCCTTTATCATTCCAGGCGGTACCTCAGCACTTTTACGTCATCTGAAAACCAATCACCCCGCCGCCATCAATTTCGACCCCGAAAATCCGCCGCCAATCGTTCGAAGAAAGAAGAAGAAGACGATGGAAGGTAAGAAGTGTTCAATAGAGCGCGATTGCAGATTTTTGAAATTTGAAATTTTTGAAAAAAAATTCAATGGAGCGAAGTTGCGAAAAAAAATTTTGAAAAATTAAAAAAAAAATTTTTTAAAATATTTTCAGATTACACCATCGTCACCGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>471 426 72 31</canonical_bands>
                <polymorphic_bands>471 426 103</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGGWCCC</site>
                <isoschizomers>
                    <enzyme>SanDI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGACATCTCCAGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGTAATTACAGGCGGCTCTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGACATCTCCAGAAAAATCGATAAAATTGGAGCCGGATGACGAGGCGGATAATGGGGATTACGGTACAAATGGAGAAGGACCATCGGCAGAGATGCATTTAGGCCTAAATTCGGATCTTCAAAATTTGTTAAATCCCGAAAGAAAGGGGGGACCCGCTTGGTTTCCATCGTCCAAAGGGCGGTCCATTGTGTGGGAACACATCACTTGGGTCACTGAGACGCAGAGAGCCGCCTGTAATTACT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGACATCTCCAGAAAAATCGATAAAATTGGAGCCGGATGACGAGGCGGATAATGGGGATTACGGTACAAATGGAGAAGGACCATCGGCAGAGATGCATTTAGGCCTAAATTCGGATCTTCAAAATTTGTTAAATCCCGAAAGAAAGGGGGGRCCCGCTTGGTTTCCATCGTCCAAAGGGCGGTCCATTGTGTGGGAACACATCACTTGGGTCACTGAGACGCAGAGAGCCGCCTGTAATTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8263</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>107904</contig_pos>
        <strand>+</strand>
        <context>TCAAAATTTG[C/T]TAAATCCCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACCATCGGCAGAGATGCATTTAGGCCTAAATTCGGATCTTCAAAATTTG</left_flank>
        <right_flank>TAAATCCCGAAAGAAAGGGGGGACCCGCTTGGTTTCCATCGTCCAAAGGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACGGCTAAAAATCGTCAAAAAAGCGGTTCTGTCGAAAATTTTGACACCTGTGCCTTTAAATTTCTCTACAGTAGCCTGAAATTCAATTTTGGTATTTTTCGCGCATTTTTCGGCAATTTTCAATGATTTTTTTGTCATTTTCATTAGATTTTACTCTAAAAATTTCATTTTTACAAAAAAAAACCTAAAAATTGTGAATTTCATAAAAAATTTTCGACACCTGCGCCTTTAAATTTTTCCTACAGTAACCCGAAAATTTCGTTTTTTATCGATTTTTTTCTAGCGGCGAACGTTTTTCGCTAATTTTTTCACAGATTTTTCTCATTATTAAATGCGAAAAATTCAGAAAAAAAAGAATTTCAGAAAAAATGACATCTCCAGAAAAATCGATAAAATTGGAGCCGGATGACGAGGCGGATAATGGGGATTACGGTACAAATGGAGAAGGACCATCGGCAGAGATGCATTTAGGCCTAAATTCGGATCTTCAAAATTTGTTAAATCCCGAAAGAAAGGGGGGACCCGCTTGGTTTCCATCGTCCAAAGGGCGGTCCATTGTGTGGGAACACATCACTTGGGTCACTGAGACGCAGAGAGCCGCCTGTAATTACTGTAGCGCTGAATTTCAGATAAAGGGTACGGTAGAAAATTTGGGGAAAAATTTTTTTTGAAAATTTTCAAAAAAAAATTTTTTTTAGAAAATTTTTTTTTTCAAAATTTCAAAATTTTTTCTACAGTACCCCTTTATCATTCCAGGCGGTACCTCAGCACTTTTACGTCATCTGAAAACCAATCACCCCGCCGCCATCAATTTCGACCCCGAAAATCCGCCGCCAATCGTTCGAAGAAAGAAGAAGAAGACGATGGAAGGTAAGAAGTGTTCAATAGAGCGCGATTGCAGATTTTTGAAATTTGAAATTTTTGAAAAAAAATTCAATGGAGCGAAGTTGCGAAAAAAAATTTTGAAAAATTAAAAAAAAAATTTTTTAAAATATTTT</canonical>
            <polymorphic>TTACGGCTAAAAATCGTCAAAAAAGCGGTTCTGTCGAAAATTTTGACACCTGTGCCTTTAAATTTCTCTACAGTAGCCTGAAATTCAATTTTGGTATTTTTCGCGCATTTTTCGGCAATTTTCAATGATTTTTTTGTCATTTTCATTAGATTTTACTCTAAAAATTTCATTTTTACAAAAAAAAACCTAAAAATTGTGAATTTCATAAAAAATTTTCGACACCTGCGCCTTTAAATTTTTCCTACAGTAACCCGAAAATTTCGTTTTTTATCGATTTTTTTCTAGCGGCGAACGTTTTTCGCTAATTTTTTCACAGATTTTTCTCATTATTAAATGCGAAAAATTCAGAAAAAAAAGAATTTCAGAAAAAATGACATCTCCAGAAAAATCGATAAAATTGGAGCCGGATGACGAGGCGGATAATGGGGATTACGGTACAAATGGAGAAGGACCATCGGCAGAGATGCATTTAGGCCTAAATTCGGATCTTCAAAATTTGYTAAATCCCGAAAGAAAGGGGGGACCCGCTTGGTTTCCATCGTCCAAAGGGCGGTCCATTGTGTGGGAACACATCACTTGGGTCACTGAGACGCAGAGAGCCGCCTGTAATTACTGTAGCGCTGAATTTCAGATAAAGGGTACGGTAGAAAATTTGGGGAAAAATTTTTTTTGAAAATTTTCAAAAAAAAATTTTTTTTAGAAAATTTTTTTTTTCAAAATTTCAAAATTTTTTCTACAGTACCCCTTTATCATTCCAGGCGGTACCTCAGCACTTTTACGTCATCTGAAAACCAATCACCCCGCCGCCATCAATTTCGACCCCGAAAATCCGCCGCCAATCGTTCGAAGAAAGAAGAAGAAGACGATGGAAGGTAAGAAGTGTTCAATAGAGCGCGATTGCAGATTTTTGAAATTTGAAATTTTTGAAAAAAAATTCAATGGAGCGAAGTTGCGAAAAAAAATTTTGAAAAATTAAAAAAAAAATTTTTTAAAATATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>473 173 170 99 58 16 11</canonical_bands>
                <polymorphic_bands>643 173 99 58 16 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGACATCTCCAGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGTAATTACAGGCGGCTCTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGACATCTCCAGAAAAATCGATAAAATTGGAGCCGGATGACGAGGCGGATAATGGGGATTACGGTACAAATGGAGAAGGACCATCGGCAGAGATGCATTTAGGCCTAAATTCGGATCTTCAAAATTTGTTAAATCCCGAAAGAAAGGGGGGACCCGCTTGGTTTCCATCGTCCAAAGGGCGGTCCATTGTGTGGGAACACATCACTTGGGTCACTGAGACGCAGAGAGCCGCCTGTAATTACT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGACATCTCCAGAAAAATCGATAAAATTGGAGCCGGATGACGAGGCGGATAATGGGGATTACGGTACAAATGGAGAAGGACCATCGGCAGAGATGCATTTAGGCCTAAATTCGGATCTTCAAAATTTGYTAAATCCCGAAAGAAAGGGGGGACCCGCTTGGTTTCCATCGTCCAAAGGGCGGTCCATTGTGTGGGAACACATCACTTGGGTCACTGAGACGCAGAGAGCCGCCTGTAATTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8264</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>107863</contig_pos>
        <strand>+</strand>
        <context>GGACCATCGG[C/G]AGAGATGCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGACGAGGCGGATAATGGGGATTACGGTACAAATGGAGAAGGACCATCGG</left_flank>
        <right_flank>AGAGATGCATTTAGGCCTAAATTCGGATCTTCAAAATTTGTTAAATCCCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGATTTTCTACCGAAATTTTGAGGCGGAAAAACCATTTTTACGGCTAAAAATCGTCAAAAAAGCGGTTCTGTCGAAAATTTTGACACCTGTGCCTTTAAATTTCTCTACAGTAGCCTGAAATTCAATTTTGGTATTTTTCGCGCATTTTTCGGCAATTTTCAATGATTTTTTTGTCATTTTCATTAGATTTTACTCTAAAAATTTCATTTTTACAAAAAAAAACCTAAAAATTGTGAATTTCATAAAAAATTTTCGACACCTGCGCCTTTAAATTTTTCCTACAGTAACCCGAAAATTTCGTTTTTTATCGATTTTTTTCTAGCGGCGAACGTTTTTCGCTAATTTTTTCACAGATTTTTCTCATTATTAAATGCGAAAAATTCAGAAAAAAAAGAATTTCAGAAAAAATGACATCTCCAGAAAAATCGATAAAATTGGAGCCGGATGACGAGGCGGATAATGGGGATTACGGTACAAATGGAGAAGGACCATCGGCAGAGATGCATTTAGGCCTAAATTCGGATCTTCAAAATTTGTTAAATCCCGAAAGAAAGGGGGGACCCGCTTGGTTTCCATCGTCCAAAGGGCGGTCCATTGTGTGGGAACACATCACTTGGGTCACTGAGACGCAGAGAGCCGCCTGTAATTACTGTAGCGCTGAATTTCAGATAAAGGGTACGGTAGAAAATTTGGGGAAAAATTTTTTTTGAAAATTTTCAAAAAAAAATTTTTTTTAGAAAATTTTTTTTTTCAAAATTTCAAAATTTTTTCTACAGTACCCCTTTATCATTCCAGGCGGTACCTCAGCACTTTTACGTCATCTGAAAACCAATCACCCCGCCGCCATCAATTTCGACCCCGAAAATCCGCCGCCAATCGTTCGAAGAAAGAAGAAGAAGACGATGGAAGGTAAGAAGTGTTCAATAGAGCGCGATTGCAGATTTTTGAAATTTGAAATTTTTGAAAAAAAATTCAATGGAGCGAAGTTGCGAAAAA</canonical>
            <polymorphic>TTTCGATTTTCTACCGAAATTTTGAGGCGGAAAAACCATTTTTACGGCTAAAAATCGTCAAAAAAGCGGTTCTGTCGAAAATTTTGACACCTGTGCCTTTAAATTTCTCTACAGTAGCCTGAAATTCAATTTTGGTATTTTTCGCGCATTTTTCGGCAATTTTCAATGATTTTTTTGTCATTTTCATTAGATTTTACTCTAAAAATTTCATTTTTACAAAAAAAAACCTAAAAATTGTGAATTTCATAAAAAATTTTCGACACCTGCGCCTTTAAATTTTTCCTACAGTAACCCGAAAATTTCGTTTTTTATCGATTTTTTTCTAGCGGCGAACGTTTTTCGCTAATTTTTTCACAGATTTTTCTCATTATTAAATGCGAAAAATTCAGAAAAAAAAGAATTTCAGAAAAAATGACATCTCCAGAAAAATCGATAAAATTGGAGCCGGATGACGAGGCGGATAATGGGGATTACGGTACAAATGGAGAAGGACCATCGGSAGAGATGCATTTAGGCCTAAATTCGGATCTTCAAAATTTGTTAAATCCCGAAAGAAAGGGGGGACCCGCTTGGTTTCCATCGTCCAAAGGGCGGTCCATTGTGTGGGAACACATCACTTGGGTCACTGAGACGCAGAGAGCCGCCTGTAATTACTGTAGCGCTGAATTTCAGATAAAGGGTACGGTAGAAAATTTGGGGAAAAATTTTTTTTGAAAATTTTCAAAAAAAAATTTTTTTTAGAAAATTTTTTTTTTCAAAATTTCAAAATTTTTTCTACAGTACCCCTTTATCATTCCAGGCGGTACCTCAGCACTTTTACGTCATCTGAAAACCAATCACCCCGCCGCCATCAATTTCGACCCCGAAAATCCGCCGCCAATCGTTCGAAGAAAGAAGAAGAAGACGATGGAAGGTAAGAAGTGTTCAATAGAGCGCGATTGCAGATTTTTGAAATTTGAAATTTTTGAAAAAAAATTCAATGGAGCGAAGTTGCGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGACATCTCCAGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGTAATTACAGGCGGCTCTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGACATCTCCAGAAAAATCGATAAAATTGGAGCCGGATGACGAGGCGGATAATGGGGATTACGGTACAAATGGAGAAGGACCATCGGCAGAGATGCATTTAGGCCTAAATTCGGATCTTCAAAATTTGTTAAATCCCGAAAGAAAGGGGGGACCCGCTTGGTTTCCATCGTCCAAAGGGCGGTCCATTGTGTGGGAACACATCACTTGGGTCACTGAGACGCAGAGAGCCGCCTGTAATTACT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGACATCTCCAGAAAAATCGATAAAATTGGAGCCGGATGACGAGGCGGATAATGGGGATTACGGTACAAATGGAGAAGGACCATCGGSAGAGATGCATTTAGGCCTAAATTCGGATCTTCAAAATTTGTTAAATCCCGAAAGAAAGGGGGGACCCGCTTGGTTTCCATCGTCCAAAGGGCGGTCCATTGTGTGGGAACACATCACTTGGGTCACTGAGACGCAGAGAGCCGCCTGTAATTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8265</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>107669</contig_pos>
        <strand>+</strand>
        <context>AAAATTTCGT[A/T]TTTTATCGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCGACACCTGCGCCTTTAAATTTTTCCTACAGTAACCCGAAAATTTCGT</left_flank>
        <right_flank>TTTTATCGATTTTTTTCTAGCGGCGAACGTTTTTCGCTAATTTTTTCACA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTAGCTTAATTTGAGCCTATTTAGTTGGGAAATTCGGCAAAAATCTAGAAATTTCAGCCTCATTTCCTTTAAAAAGTAGAGCATGTCCCTTTAAACTGGGCTACTGTGGCTGCGCGATGTGGCAAATTGCCACTGGCAAAGAGCTGGGGTTTTCATTCGAATTGAAAATTTTAATTGGTTTTTAAACTCGTTTTTCGATTTTCTACCGAAATTTTGAGGCGGAAAAACCATTTTTACGGCTAAAAATCGTCAAAAAAGCGGTTCTGTCGAAAATTTTGACACCTGTGCCTTTAAATTTCTCTACAGTAGCCTGAAATTCAATTTTGGTATTTTTCGCGCATTTTTCGGCAATTTTCAATGATTTTTTTGTCATTTTCATTAGATTTTACTCTAAAAATTTCATTTTTACAAAAAAAAACCTAAAAATTGTGAATTTCATAAAAAATTTTCGACACCTGCGCCTTTAAATTTTTCCTACAGTAACCCGAAAATTTCGTTTTTTATCGATTTTTTTCTAGCGGCGAACGTTTTTCGCTAATTTTTTCACAGATTTTTCTCATTATTAAATGCGAAAAATTCAGAAAAAAAAGAATTTCAGAAAAAATGACATCTCCAGAAAAATCGATAAAATTGGAGCCGGATGACGAGGCGGATAATGGGGATTACGGTACAAATGGAGAAGGACCATCGGCAGAGATGCATTTAGGCCTAAATTCGGATCTTCAAAATTTGTTAAATCCCGAAAGAAAGGGGGGACCCGCTTGGTTTCCATCGTCCAAAGGGCGGTCCATTGTGTGGGAACACATCACTTGGGTCACTGAGACGCAGAGAGCCGCCTGTAATTACTGTAGCGCTGAATTTCAGATAAAGGGTACGGTAGAAAATTTGGGGAAAAATTTTTTTTGAAAATTTTCAAAAAAAAATTTTTTTTAGAAAATTTTTTTTTTCAAAATTTCAAAATTTTTTCTACAGTACCCCTTTATCATTCCAGGCGGTAC</canonical>
            <polymorphic>TTTTAGCTTAATTTGAGCCTATTTAGTTGGGAAATTCGGCAAAAATCTAGAAATTTCAGCCTCATTTCCTTTAAAAAGTAGAGCATGTCCCTTTAAACTGGGCTACTGTGGCTGCGCGATGTGGCAAATTGCCACTGGCAAAGAGCTGGGGTTTTCATTCGAATTGAAAATTTTAATTGGTTTTTAAACTCGTTTTTCGATTTTCTACCGAAATTTTGAGGCGGAAAAACCATTTTTACGGCTAAAAATCGTCAAAAAAGCGGTTCTGTCGAAAATTTTGACACCTGTGCCTTTAAATTTCTCTACAGTAGCCTGAAATTCAATTTTGGTATTTTTCGCGCATTTTTCGGCAATTTTCAATGATTTTTTTGTCATTTTCATTAGATTTTACTCTAAAAATTTCATTTTTACAAAAAAAAACCTAAAAATTGTGAATTTCATAAAAAATTTTCGACACCTGCGCCTTTAAATTTTTCCTACAGTAACCCGAAAATTTCGTWTTTTATCGATTTTTTTCTAGCGGCGAACGTTTTTCGCTAATTTTTTCACAGATTTTTCTCATTATTAAATGCGAAAAATTCAGAAAAAAAAGAATTTCAGAAAAAATGACATCTCCAGAAAAATCGATAAAATTGGAGCCGGATGACGAGGCGGATAATGGGGATTACGGTACAAATGGAGAAGGACCATCGGCAGAGATGCATTTAGGCCTAAATTCGGATCTTCAAAATTTGTTAAATCCCGAAAGAAAGGGGGGACCCGCTTGGTTTCCATCGTCCAAAGGGCGGTCCATTGTGTGGGAACACATCACTTGGGTCACTGAGACGCAGAGAGCCGCCTGTAATTACTGTAGCGCTGAATTTCAGATAAAGGGTACGGTAGAAAATTTGGGGAAAAATTTTTTTTGAAAATTTTCAAAAAAAAATTTTTTTTAGAAAATTTTTTTTTTCAAAATTTCAAAATTTTTTCTACAGTACCCCTTTATCATTCCAGGCGGTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCGGCAATTTTCAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTGAATTTTTCGCATTTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCGGCAATTTTCAATGATTTTTTTGTCATTTTCATTAGATTTTACTCTAAAAATTTCATTTTTACAAAAAAAAACCTAAAAATTGTGAATTTCATAAAAAATTTTCGACACCTGCGCCTTTAAATTTTTCCTACAGTAACCCGAAAATTTCGTTTTTTATCGATTTTTTTCTAGCGGCGAACGTTTTTCGCTAATTTTTTCACAGATTTTTCTCATTATTAAATGCGAAAAATTCAGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCGGCAATTTTCAATGATTTTTTTGTCATTTTCATTAGATTTTACTCTAAAAATTTCATTTTTACAAAAAAAAACCTAAAAATTGTGAATTTCATAAAAAATTTTCGACACCTGCGCCTTTAAATTTTTCCTACAGTAACCCGAAAATTTCGTWTTTTATCGATTTTTTTCTAGCGGCGAACGTTTTTCGCTAATTTTTTCACAGATTTTTCTCATTATTAAATGCGAAAAATTCAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8266</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>107636</contig_pos>
        <strand>+</strand>
        <context>CCTGCGCCTT[C/T]AAATTTTTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAACCTAAAAATTGTGAATTTCATAAAAAATTTTCGACACCTGCGCCTT</left_flank>
        <right_flank>AAATTTTTCCTACAGTAACCCGAAAATTTCGTTTTTTATCGATTTTTTTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTATGGGATTTTTAGGTTTTTTTTTGGCTATTTTAGCTTAATTTGAGCCTATTTAGTTGGGAAATTCGGCAAAAATCTAGAAATTTCAGCCTCATTTCCTTTAAAAAGTAGAGCATGTCCCTTTAAACTGGGCTACTGTGGCTGCGCGATGTGGCAAATTGCCACTGGCAAAGAGCTGGGGTTTTCATTCGAATTGAAAATTTTAATTGGTTTTTAAACTCGTTTTTCGATTTTCTACCGAAATTTTGAGGCGGAAAAACCATTTTTACGGCTAAAAATCGTCAAAAAAGCGGTTCTGTCGAAAATTTTGACACCTGTGCCTTTAAATTTCTCTACAGTAGCCTGAAATTCAATTTTGGTATTTTTCGCGCATTTTTCGGCAATTTTCAATGATTTTTTTGTCATTTTCATTAGATTTTACTCTAAAAATTTCATTTTTACAAAAAAAAACCTAAAAATTGTGAATTTCATAAAAAATTTTCGACACCTGCGCCTTTAAATTTTTCCTACAGTAACCCGAAAATTTCGTTTTTTATCGATTTTTTTCTAGCGGCGAACGTTTTTCGCTAATTTTTTCACAGATTTTTCTCATTATTAAATGCGAAAAATTCAGAAAAAAAAGAATTTCAGAAAAAATGACATCTCCAGAAAAATCGATAAAATTGGAGCCGGATGACGAGGCGGATAATGGGGATTACGGTACAAATGGAGAAGGACCATCGGCAGAGATGCATTTAGGCCTAAATTCGGATCTTCAAAATTTGTTAAATCCCGAAAGAAAGGGGGGACCCGCTTGGTTTCCATCGTCCAAAGGGCGGTCCATTGTGTGGGAACACATCACTTGGGTCACTGAGACGCAGAGAGCCGCCTGTAATTACTGTAGCGCTGAATTTCAGATAAAGGGTACGGTAGAAAATTTGGGGAAAAATTTTTTTTGAAAATTTTCAAAAAAAAATTTTTTTTAGAAAATTTTTTTTTTCAAAATTTCAAAATTTTT</canonical>
            <polymorphic>TTTTTATGGGATTTTTAGGTTTTTTTTTGGCTATTTTAGCTTAATTTGAGCCTATTTAGTTGGGAAATTCGGCAAAAATCTAGAAATTTCAGCCTCATTTCCTTTAAAAAGTAGAGCATGTCCCTTTAAACTGGGCTACTGTGGCTGCGCGATGTGGCAAATTGCCACTGGCAAAGAGCTGGGGTTTTCATTCGAATTGAAAATTTTAATTGGTTTTTAAACTCGTTTTTCGATTTTCTACCGAAATTTTGAGGCGGAAAAACCATTTTTACGGCTAAAAATCGTCAAAAAAGCGGTTCTGTCGAAAATTTTGACACCTGTGCCTTTAAATTTCTCTACAGTAGCCTGAAATTCAATTTTGGTATTTTTCGCGCATTTTTCGGCAATTTTCAATGATTTTTTTGTCATTTTCATTAGATTTTACTCTAAAAATTTCATTTTTACAAAAAAAAACCTAAAAATTGTGAATTTCATAAAAAATTTTCGACACCTGCGCCTTYAAATTTTTCCTACAGTAACCCGAAAATTTCGTTTTTTATCGATTTTTTTCTAGCGGCGAACGTTTTTCGCTAATTTTTTCACAGATTTTTCTCATTATTAAATGCGAAAAATTCAGAAAAAAAAGAATTTCAGAAAAAATGACATCTCCAGAAAAATCGATAAAATTGGAGCCGGATGACGAGGCGGATAATGGGGATTACGGTACAAATGGAGAAGGACCATCGGCAGAGATGCATTTAGGCCTAAATTCGGATCTTCAAAATTTGTTAAATCCCGAAAGAAAGGGGGGACCCGCTTGGTTTCCATCGTCCAAAGGGCGGTCCATTGTGTGGGAACACATCACTTGGGTCACTGAGACGCAGAGAGCCGCCTGTAATTACTGTAGCGCTGAATTTCAGATAAAGGGTACGGTAGAAAATTTGGGGAAAAATTTTTTTTGAAAATTTTCAAAAAAAAATTTTTTTTAGAAAATTTTTTTTTTCAAAATTTCAAAATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 173 109 105 91 22</canonical_bands>
                <polymorphic_bands>673 109 105 91 22</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>232 173 170 109 99 80 63 41 22 11</canonical_bands>
                <polymorphic_bands>272 232 170 109 80 63 41 22 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCGGCAATTTTCAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTGAATTTTTCGCATTTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCGGCAATTTTCAATGATTTTTTTGTCATTTTCATTAGATTTTACTCTAAAAATTTCATTTTTACAAAAAAAAACCTAAAAATTGTGAATTTCATAAAAAATTTTCGACACCTGCGCCTTTAAATTTTTCCTACAGTAACCCGAAAATTTCGTTTTTTATCGATTTTTTTCTAGCGGCGAACGTTTTTCGCTAATTTTTTCACAGATTTTTCTCATTATTAAATGCGAAAAATTCAGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCGGCAATTTTCAATGATTTTTTTGTCATTTTCATTAGATTTTACTCTAAAAATTTCATTTTTACAAAAAAAAACCTAAAAATTGTGAATTTCATAAAAAATTTTCGACACCTGCGCCTTYAAATTTTTCCTACAGTAACCCGAAAATTTCGTTTTTTATCGATTTTTTTCTAGCGGCGAACGTTTTTCGCTAATTTTTTCACAGATTTTTCTCATTATTAAATGCGAAAAATTCAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8269</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>107572</contig_pos>
        <strand></strand>
        <context>CTAAAAATTT[C/G]ATTTTTACYA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTTTCAATGATTTTTTTGTCATTTTCATTAGATTTTACTCTAAAAATTT</left_flank>
        <right_flank>ATTTTTACAAAAAAAAACCTAAAAATTGTGAATTTCATAAAAAATTTTCG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAATCTTCATTGCTTGCTTCTTAGAGGGGGGTTTCTTCGGCATTTTTTTTATTTTATGCACATTTTTTATGGGATTTTTAGGTTTTTTTTTGGCTATTTTAGCTTAATTTGAGCCTATTTAGTTGGGAAATTCGGCAAAAATCTAGAAATTTCAGCCTCATTTCCTTTAAAAAGTAGAGCATGTCCCTTTAAACTGGGCTACTGTGGCTGCGCGATGTGGCAAATTGCCACTGGCAAAGAGCTGGGGTTTTCATTCGAATTGAAAATTTTAATTGGTTTTTAAACTCGTTTTTCGATTTTCTACCGAAATTTTGAGGCGGAAAAACCATTTTTACGGCTAAAAATCGTCAAAAAAGCGGTTCTGTCGAAAATTTTGACACCTGTGCCTTTAAATTTCTCTACAGTAGCCTGAAATTCAATTTTGGTATTTTTCGCGCATTTTTCGGCAATTTTCAATGATTTTTTTGTCATTTTCATTAGATTTTACTCTAAAAATTTCATTTTTACAAAAAAAAACCTAAAAATTGTGAATTTCATAAAAAATTTTCGACACCTGCGCCTTTAAATTTTTCCTACAGTAACCCGAAAATTTCGTTTTTTATCGATTTTTTTCTAGCGGCGAACGTTTTTCGCTAATTTTTTCACAGATTTTTCTCATTATTAAATGCGAAAAATTCAGAAAAAAAAGAATTTCAGAAAAAATGACATCTCCAGAAAAATCGATAAAATTGGAGCCGGATGACGAGGCGGATAATGGGGATTACGGTACAAATGGAGAAGGACCATCGGCAGAGATGCATTTAGGCCTAAATTCGGATCTTCAAAATTTGTTAAATCCCGAAAGAAAGGGGGGACCCGCTTGGTTTCCATCGTCCAAAGGGCGGTCCATTGTGTGGGAACACATCACTTGGGTCACTGAGACGCAGAGAGCCGCCTGTAATTACTGTAGCGCTGAATTTCAGATAAAGGGTACGGTAGAAAATTTGGGGAAAAATTTTT</canonical>
            <polymorphic>TCAATCTTCATTGCTTGCTTCTTAGAGGGGGGTTTCTTCGGCATTTTTTTTATTTTATGCACATTTTTTATGGGATTTTTAGGTTTTTTTTTGGCTATTTTAGCTTAATTTGAGCCTATTTAGTTGGGAAATTCGGCAAAAATCTAGAAATTTCAGCCTCATTTCCTTTAAAAAGTAGAGCATGTCCCTTTAAACTGGGCTACTGTGGCTGCGCGATGTGGCAAATTGCCACTGGCAAAGAGCTGGGGTTTTCATTCGAATTGAAAATTTTAATTGGTTTTTAAACTCGTTTTTCGATTTTCTACCGAAATTTTGAGGCGGAAAAACCATTTTTACGGCTAAAAATCGTCAAAAAAGCGGTTCTGTCGAAAATTTTGACACCTGTGCCTTTAAATTTCTCTACAGTAGCCTGAAATTCAATTTTGGTATTTTTCGCGCATTTTTCGGCAATTTTCAATGATTTTTTTGTCATTTTCATTAGATTTTACTCTAAAAATTTSATTTTTACAAAAAAAAACCTAAAAATTGTGAATTTCATAAAAAATTTTCGACACCTGCGCCTTTAAATTTTTCCTACAGTAACCCGAAAATTTCGTTTTTTATCGATTTTTTTCTAGCGGCGAACGTTTTTCGCTAATTTTTTCACAGATTTTTCTCATTATTAAATGCGAAAAATTCAGAAAAAAAAGAATTTCAGAAAAAATGACATCTCCAGAAAAATCGATAAAATTGGAGCCGGATGACGAGGCGGATAATGGGGATTACGGTACAAATGGAGAAGGACCATCGGCAGAGATGCATTTAGGCCTAAATTCGGATCTTCAAAATTTGTTAAATCCCGAAAGAAAGGGGGGACCCGCTTGGTTTCCATCGTCCAAAGGGCGGTCCATTGTGTGGGAACACATCACTTGGGTCACTGAGACGCAGAGAGCCGCCTGTAATTACTGTAGCGCTGAATTTCAGATAAAGGGTACGGTAGAAAATTTGGGGAAAAATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCGGCAATTTTCAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTGAATTTTTCGCATTTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCGGCAATTTTCAATGATTTTTTTGTCATTTTCATTAGATTTTACTCTAAAAATTTCATTTTTACAAAAAAAAACCTAAAAATTGTGAATTTCATAAAAAATTTTCGACACCTGCGCCTTTAAATTTTTCCTACAGTAACCCGAAAATTTCGTTTTTTATCGATTTTTTTCTAGCGGCGAACGTTTTTCGCTAATTTTTTCACAGATTTTTCTCATTATTAAATGCGAAAAATTCAGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCGGCAATTTTCAATGATTTTTTTGTCATTTTCATTAGATTTTACTCTAAAAATTTSATTTTTACAAAAAAAAACCTAAAAATTGTGAATTTCATAAAAAATTTTCGACACCTGCGCCTTTAAATTTTTCCTACAGTAACCCGAAAATTTCGTTTTTTATCGATTTTTTTCTAGCGGCGAACGTTTTTCGCTAATTTTTTCACAGATTTTTCTCATTATTAAATGCGAAAAATTCAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8270</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>115772</contig_pos>
        <strand>+</strand>
        <context>RAAAATTTGA[A/G]TTTGGCGCCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATCGGGTTACTGTAGAAATTGGGGATACTGTATTATCAGAAAATTTGA</left_flank>
        <right_flank>TTTGGCGCCGCCAAAAAAATTCTGGATCGCCTCAATCGGAGATTCATTTT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCAAAATTTAGCTTCCTATTTTTTTCTAAAATAAATTTTCAGATGTTGGCATTTCTATATTTCGTCCAAATGCTCATAAATCTTCCGAAAATGCTAGTTTTGAGCTGGAACAATGTGGTAAGAGAGATTTCTAGGCCACCTGAGCTTTCTAGGCCACCGGGGGATTTTAGGAATTTAAAAAATTTCAAAAAAATGTTTTTTCCAGATTTTCCCCCCAATGGATTCCTCCAAAATGGCTTTTCGAATAACTACAATATCCGATGAATTTCCAGAATTCTGGCAGACACCTTCAGACGTTTCCAGAAGAGATTCCCTTCTGAATATTTCCATTTGCCACGTGGAAAAATTCAAAAATTCAGAATTTTCGAAATTTGTCTGGAAATTTGATGGGCTGAAAATTTTCGGGAAAGAATGCAGCCGATTTTTTCGAATCCAGGATCGAAAAACTCATCGGGTTACTGTAGAAATTGGGGATACTGTATTATCAGAAAATTTGAGTTTGGCGCCGCCAAAAAAATTCTGGATCGCCTCAATCGGAGATTCATTTTCCTCGGGACAAGGCAACCCTGGGGACAAATGGCTCGATGGTAAGCTACAGTAATCCTACAGTACCCCAAGAGTACAGTATGCCTCATTTCAGAGTCTTGTTATCGATCGAAGCTGGCGTTTCCTGTGAGGATTTCCGAGAAAATCGAAACTTCCATTTTATCATTTTTATCTTGCTCGGGGAGTACTGTAGAACAAGGAATACTGTCGAAAAATGGGCAATTAGAGGTTTTAAACTCCTTAATTATGTCTCACGGCTCTCCTCCTGATATTTTATTCCTCACAATTGGCGGAAATGATATCGGATTCACCGACGTGATTTCAATGGTCCAGCGAGACAGTAATATTGCTGATAAATTTGATATGAGGTATTTTTTCAATTATTAAAAATTATGTAAAACTCAATTCCACACATTTCCCACTTTTCAAAACTCAAAAACACCAATTTTAAG</canonical>
            <polymorphic>TCTCAAAATTTAGCTTCCTATTTTTTTCTAAAATAAATTTTCAGATGTTGGCATTTCTATATTTCGTCCAAATGCTCATAAATCTTCCGAAAATGCTAGTTTTGAGCTGGAACAATGTGGTAAGAGAGATTTCTAGGCCACCTGAGCTTTCTAGGCCACCGGGGGATTTTAGGAATTTAAAAAATTTCAAAAAAATGTTTTTTCCAGATTTTCCCCCCAATGGATTCCTCCAAAATGGCTTTTCGAATAACTACAATATCCGATGAATTTCCAGAATTCTGGCAGACACCTTCAGACGTTTCCAGAAGAGATTCCCTTCTGAATATTTCCATTTGCCACGTGGAAAAATTCAAAAATTCAGAATTTTCGAAATTTGTCTGGAAATTTGATGGGCTGAAAATTTTCGGGAAAGAATGCAGCCGATTTTTTCGAATCCAGGATCGAAAAACTCATCGGGTTACTGTAGAAATTGGGGATACTGTATTATCAGAAAATTTGARTTTGGCGCCGCCAAAAAAATTCTGGATCGCCTCAATCGGAGATTCATTTTCCTCGGGACAAGGCAACCCTGGGGACAAATGGCTCGATGGTAAGCTACAGTAATCCTACAGTACCCCAAGAGTACAGTATGCCTCATTTCAGAGTCTTGTTATCGATCGAAGCTGGCGTTTCCTGTGAGGATTTCCGAGAAAATCGAAACTTCCATTTTATCATTTTTATCTTGCTCGGGGAGTACTGTAGAACAAGGAATACTGTCGAAAAATGGGCAATTAGAGGTTTTAAACTCCTTAATTATGTCTCACGGCTCTCCTCCTGATATTTTATTCCTCACAATTGGCGGAAATGATATCGGATTCACCGACGTGATTTCAATGGTCCAGCGAGACAGTAATATTGCTGATAAATTTGATATGAGGTATTTTTTCAATTATTAAAAATTATGTAAAACTCAATTCCACACATTTCCCACTTTTCAAAACTCAAAAACACCAATTTTAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTGTCTGGAAATTTGATG</pcr_primer_p1>
		<pcr_primer_p2>TTGGGGTACTGTAGGATTACTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTTGTCTGGAAATTTGATGGGCTGAAAATTTTCGGGAAAGAATGCAGCCGATTTTTTCGAATCCAGGATCGAAAAACTCATCGGGTTACTGTAGAAATTGGGGATACTGTATTATCAGAAAATTTGAGTTTGGCGCCGCCAAAAAAATTCTGGATCGCCTCAATCGGAGATTCATTTTCCTCGGGACAAGGCAACCCTGGGGACAAATGGCTCGATGGTAAGCTACAGTAATCCTACAGTACCCCAA</canonical_amplicon>
		<polymorphic_amplicon>AAATTTGTCTGGAAATTTGATGGGCTGAAAATTTTCGGGAAAGAATGCAGCCGATTTTTTCGAATCCAGGATCGAAAAACTCATCGGGTTACTGTAGAAATTGGGGATACTGTATTATCAGAAAATTTGARTTTGGCGCCGCCAAAAAAATTCTGGATCGCCTCAATCGGAGATTCATTTTCCTCGGGACAAGGCAACCCTGGGGACAAATGGCTCGATGGTAAGCTACAGTAATCCTACAGTACCCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8271</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>115972</contig_pos>
        <strand>+</strand>
        <context>AAAATCGAAA[A/C]TTCCATTTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTATCGATCGAAGCTGGCGTTTCCTGTGAGGATTTCCGAGAAAATCGAAA</left_flank>
        <right_flank>TTCCATTTTATCATTTTTATCTTGCTCGGGGAGTACTGTAGAACAAGGAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCAGATTTTCCCCCCAATGGATTCCTCCAAAATGGCTTTTCGAATAACTACAATATCCGATGAATTTCCAGAATTCTGGCAGACACCTTCAGACGTTTCCAGAAGAGATTCCCTTCTGAATATTTCCATTTGCCACGTGGAAAAATTCAAAAATTCAGAATTTTCGAAATTTGTCTGGAAATTTGATGGGCTGAAAATTTTCGGGAAAGAATGCAGCCGATTTTTTCGAATCCAGGATCGAAAAACTCATCGGGTTACTGTAGAAATTGGGGATACTGTATTATCAGAAAATTTGAGTTTGGCGCCGCCAAAAAAATTCTGGATCGCCTCAATCGGAGATTCATTTTCCTCGGGACAAGGCAACCCTGGGGACAAATGGCTCGATGGTAAGCTACAGTAATCCTACAGTACCCCAAGAGTACAGTATGCCTCATTTCAGAGTCTTGTTATCGATCGAAGCTGGCGTTTCCTGTGAGGATTTCCGAGAAAATCGAAACTTCCATTTTATCATTTTTATCTTGCTCGGGGAGTACTGTAGAACAAGGAATACTGTCGAAAAATGGGCAATTAGAGGTTTTAAACTCCTTAATTATGTCTCACGGCTCTCCTCCTGATATTTTATTCCTCACAATTGGCGGAAATGATATCGGATTCACCGACGTGATTTCAATGGTCCAGCGAGACAGTAATATTGCTGATAAATTTGATATGAGGTATTTTTTCAATTATTAAAAATTATGTAAAACTCAATTCCACACATTTCCCACTTTTCAAAACTCAAAAACACCAATTTTAAGCCAAGTTACGTCGAATTTAAGATCGTGGCCTAGAAATCCAAATTGGTGGCCTTGAAATTTCAAACACACAAACTAGTTTATTCAAAAAGGTTTGCCATATTAATTGAAATTCAATGCAAAAAGAATCACTCGAAAATTTCAATTTTGAAGCGAGTTACAACGGTTTGTAACCCGTGGCCTAGAATTTTCAAAAAACTAGG</canonical>
            <polymorphic>TTTCCAGATTTTCCCCCCAATGGATTCCTCCAAAATGGCTTTTCGAATAACTACAATATCCGATGAATTTCCAGAATTCTGGCAGACACCTTCAGACGTTTCCAGAAGAGATTCCCTTCTGAATATTTCCATTTGCCACGTGGAAAAATTCAAAAATTCAGAATTTTCGAAATTTGTCTGGAAATTTGATGGGCTGAAAATTTTCGGGAAAGAATGCAGCCGATTTTTTCGAATCCAGGATCGAAAAACTCATCGGGTTACTGTAGAAATTGGGGATACTGTATTATCAGAAAATTTGAGTTTGGCGCCGCCAAAAAAATTCTGGATCGCCTCAATCGGAGATTCATTTTCCTCGGGACAAGGCAACCCTGGGGACAAATGGCTCGATGGTAAGCTACAGTAATCCTACAGTACCCCAAGAGTACAGTATGCCTCATTTCAGAGTCTTGTTATCGATCGAAGCTGGCGTTTCCTGTGAGGATTTCCGAGAAAATCGAAAMTTCCATTTTATCATTTTTATCTTGCTCGGGGAGTACTGTAGAACAAGGAATACTGTCGAAAAATGGGCAATTAGAGGTTTTAAACTCCTTAATTATGTCTCACGGCTCTCCTCCTGATATTTTATTCCTCACAATTGGCGGAAATGATATCGGATTCACCGACGTGATTTCAATGGTCCAGCGAGACAGTAATATTGCTGATAAATTTGATATGAGGTATTTTTTCAATTATTAAAAATTATGTAAAACTCAATTCCACACATTTCCCACTTTTCAAAACTCAAAAACACCAATTTTAAGCCAAGTTACGTCGAATTTAAGATCGTGGCCTAGAAATCCAAATTGGTGGCCTTGAAATTTCAAACACACAAACTAGTTTATTCAAAAAGGTTTGCCATATTAATTGAAATTCAATGCAAAAAGAATCACTCGAAAATTTCAATTTTGAAGCGAGTTACAACGGTTTGTAACCCGTGGCCTAGAATTTTCAAAAAACTAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGATGGTAAGCTACAGTAATC</pcr_primer_p1>
		<pcr_primer_p2>GAGGAATAAAATATCAGGAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTCGATGGTAAGCTACAGTAATCCTACAGTACCCCAAGAGTACAGTATGCCTCATTTCAGAGTCTTGTTATCGATCGAAGCTGGCGTTTCCTGTGAGGATTTCCGAGAAAATCGAAACTTCCATTTTATCATTTTTATCTTGCTCGGGGAGTACTGTAGAACAAGGAATACTGTCGAAAAATGGGCAATTAGAGGTTTTAAACTCCTTAATTATGTCTCACGGCTCTCCTCCTGATATTTTATTCCTC</canonical_amplicon>
		<polymorphic_amplicon>CTCGATGGTAAGCTACAGTAATCCTACAGTACCCCAAGAGTACAGTATGCCTCATTTCAGAGTCTTGTTATCGATCGAAGCTGGCGTTTCCTGTGAGGATTTCCGAGAAAATCGAAAMTTCCATTTTATCATTTTTATCTTGCTCGGGGAGTACTGTAGAACAAGGAATACTGTCGAAAAATGGGCAATTAGAGGTTTTAAACTCCTTAATTATGTCTCACGGCTCTCCTCCTGATATTTTATTCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8273</snp_id>
        <super_contig>c004400954.Contig1</super_contig>
        <contig_pos>3718</contig_pos>
        <strand>+</strand>
        <context>AAGTTCAAAG[A/G]AGACGACTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCTTATTTGTCAGTCGGCCTAACTTAGCGCGCGCGGCGCAAGTTCAAAG</left_flank>
        <right_flank>AGACGACTCGTCGGAAGTATTTAGGGTGAATGAGACAAATTGGTTCCACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGCTCAAATCGAAGCCTAACGTACAAGTGAATTTTGATTTCATTTATTTCGGTTCCTATGATATCAAGAATATGTCAACTGATAATATCAAGAATATGTCAACTGATAAAACATAGCTTATATTATGACCAATATTTTATCGGTTGACCAATTTGTGATATGTTTCAGAAGAACCTAGATAATTGAGCTCGAATTGCACTTATAGGGTGGGCTTTTATTGGAGCGTTTACAGTAGGAATTGGAGTTCATGAACGGACTCAGCAATCTTGATATTGCCACGTGGAAAAATCATCTTACGTATAGAGCTAAAATTCCGGCAATTTCCGGTCGCTTTTTTCAAAAATTGAATTTTTTCAAAAATTCAAAGCGTACCGGAACCCCAGCCACCCCCAACGAAAACACCTGCATTCTTTCCTCCCCCCAAACTAATAAATATTCAAATCCCCTCCTTATTTGTCAGTCGGCCTAACTTAGCGCGCGCGGCGCAAGTTCAAAGGAGACGACTCGTCGGAAGTATTTAGGGTGAATGAGACAAATTGGTTCCACTGCTGAATGGAGAGAGTTGGAACGCCCAAAATATATGGGCGCTTTTTCCGGAATGAGTAATCCGGAAAACTTTCCATTTGGGCTTTTTTTTTGGGTACCAGGTGGCCCCCAGGTGGACAAACTTTTTCCTTCTTTTTGTATAGGCAGGAAGGACAGATGCAAAATTTCGAAGATTCGAAATTTATCTATCCACCCAAATAATTGACAATTATAAATGACACGTGTCAGGCCGGATGGACATCTGGACGGTTGCCACCTGCGCGCCGTTGGCGATGGAGAAGAAGAAGAAGAACTTGAAATTCTGATAGGAGGGAGTCTTCTAAGGAGGCGGATATGAAGATAGTGTGATGTGTGTGTTATGGTTGTTAGGAAGGACGGGGAAACGAGTCAGGGAAGCTGATCTAGGCGGTGACCGTGGCCGAAGGTCCCAGCTACAGTAACCTAGAAATAT</canonical>
            <polymorphic>AAATGCTCAAATCGAAGCCTAACGTACAAGTGAATTTTGATTTCATTTATTTCGGTTCCTATGATATCAAGAATATGTCAACTGATAATATCAAGAATATGTCAACTGATAAAACATAGCTTATATTATGACCAATATTTTATCGGTTGACCAATTTGTGATATGTTTCAGAAGAACCTAGATAATTGAGCTCGAATTGCACTTATAGGGTGGGCTTTTATTGGAGCGTTTACAGTAGGAATTGGAGTTCATGAACGGACTCAGCAATCTTGATATTGCCACGTGGAAAAATCATCTTACGTATAGAGCTAAAATTCCGGCAATTTCCGGTCGCTTTTTTCAAAAATTGAATTTTTTCAAAAATTCAAAGCGTACCGGAACCCCAGCCACCCCCAACGAAAACACCTGCATTCTTTCCTCCCCCCAAACTAATAAATATTCAAATCCCCTCCTTATTTGTCAGTCGGCCTAACTTAGCGCGCGCGGCGCAAGTTCAAAGRAGACGACTCGTCGGAAGTATTTAGGGTGAATGAGACAAATTGGTTCCACTGCTGAATGGAGAGAGTTGGAACGCCCAAAATATATGGGCGCTTTTTCCGGAATGAGTAATCCGGAAAACTTTCCATTTGGGCTTTTTTTTTGGGTACCAGGTGGCCCCCAGGTGGACAAACTTTTTCCTTCTTTTTGTATAGGCAGGAAGGACAGATGCAAAATTTCGAAGATTCGAAATTTATCTATCCACCCAAATAATTGACAATTATAAATGACACGTGTCAGGCCGGATGGACATCTGGACGGTTGCCACCTGCGCGCCGTTGGCGATGGAGAAGAAGAAGAAGAACTTGAAATTCTGATAGGAGGGAGTCTTCTAAGGAGGCGGATATGAAGATAGTGTGATGTGTGTGTTATGGTTGTTAGGAAGGACGGGGAAACGAGTCAGGGAAGCTGATCTAGGCGGTGACCGTGGCCGAAGGTCCCAGCTACAGTAACCTAGAAATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAAATTCAAAGCGTACC</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGCGCCCATATATTTT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TCAAAAATTCAAAGCGTACCGGAACCCCAGCCACCCCCAACGAAAACACCTGCATTCTTTCCTCCCCCCAAACTAATAAATATTCAAATCCCCTCCTTATTTGTCAGTCGGCCTAACTTAGCGCGCGCGGCGCAAGTTCAAAGGAGACGACTCGTCGGAAGTATTTAGGGTGAATGAGACAAATTGGTTCCACTGCTGAATGGAGAGAGTTGGAACGCCCAAAATATATGGGCGCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>TCAAAAATTCAAAGCGTACCGGAACCCCAGCCACCCCCAACGAAAACACCTGCATTCTTTCCTCCCCCCAAACTAATAAATATTCAAATCCCCTCCTTATTTGTCAGTCGGCCTAACTTAGCGCGCGCGGCGCAAGTTCAAAGRAGACGACTCGTCGGAAGTATTTAGGGTGAATGAGACAAATTGGTTCCACTGCTGAATGGAGAGAGTTGGAACGCCCAAAATATATGGGCGCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8274</snp_id>
        <super_contig>c004400954.Contig1</super_contig>
        <contig_pos>3870</contig_pos>
        <strand></strand>
        <context>GGGTACCAGG[T/C]GGCCCCCAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATGAGTAATCCGGAAAACTTTCCATTTGGGCTTTTTTTTTGGGTACCAGG</left_flank>
        <right_flank>GGCCCCCAGGTGGACAAACTTTTTCCTTCTTTTTGTATAGGCAGGAAGGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTGTGATATGTTTCAGAAGAACCTAGATAATTGAGCTCGAATTGCACTTATAGGGTGGGCTTTTATTGGAGCGTTTACAGTAGGAATTGGAGTTCATGAACGGACTCAGCAATCTTGATATTGCCACGTGGAAAAATCATCTTACGTATAGAGCTAAAATTCCGGCAATTTCCGGTCGCTTTTTTCAAAAATTGAATTTTTTCAAAAATTCAAAGCGTACCGGAACCCCAGCCACCCCCAACGAAAACACCTGCATTCTTTCCTCCCCCCAAACTAATAAATATTCAAATCCCCTCCTTATTTGTCAGTCGGCCTAACTTAGCGCGCGCGGCGCAAGTTCAAAGGAGACGACTCGTCGGAAGTATTTAGGGTGAATGAGACAAATTGGTTCCACTGCTGAATGGAGAGAGTTGGAACGCCCAAAATATATGGGCGCTTTTTCCGGAATGAGTAATCCGGAAAACTTTCCATTTGGGCTTTTTTTTTGGGTACCAGGTGGCCCCCAGGTGGACAAACTTTTTCCTTCTTTTTGTATAGGCAGGAAGGACAGATGCAAAATTTCGAAGATTCGAAATTTATCTATCCACCCAAATAATTGACAATTATAAATGACACGTGTCAGGCCGGATGGACATCTGGACGGTTGCCACCTGCGCGCCGTTGGCGATGGAGAAGAAGAAGAAGAACTTGAAATTCTGATAGGAGGGAGTCTTCTAAGGAGGCGGATATGAAGATAGTGTGATGTGTGTGTTATGGTTGTTAGGAAGGACGGGGAAACGAGTCAGGGAAGCTGATCTAGGCGGTGACCGTGGCCGAAGGTCCCAGCTACAGTAACCTAGAAATATTTTTCCGGATATTTTATCTCGATTTTTGTTACTGCAGTGGTCGTTGTACCAAAACCCGCCAAAAAAATCATGCAAAACTGTATAATGCAGATTTTTTTCTCTTGAATAGAGAGTAGAAATTACCACGGATCCCATCACTGCCAGTCACCATG</canonical>
            <polymorphic>AATTTGTGATATGTTTCAGAAGAACCTAGATAATTGAGCTCGAATTGCACTTATAGGGTGGGCTTTTATTGGAGCGTTTACAGTAGGAATTGGAGTTCATGAACGGACTCAGCAATCTTGATATTGCCACGTGGAAAAATCATCTTACGTATAGAGCTAAAATTCCGGCAATTTCCGGTCGCTTTTTTCAAAAATTGAATTTTTTCAAAAATTCAAAGCGTACCGGAACCCCAGCCACCCCCAACGAAAACACCTGCATTCTTTCCTCCCCCCAAACTAATAAATATTCAAATCCCCTCCTTATTTGTCAGTCGGCCTAACTTAGCGCGCGCGGCGCAAGTTCAAAGGAGACGACTCGTCGGAAGTATTTAGGGTGAATGAGACAAATTGGTTCCACTGCTGAATGGAGAGAGTTGGAACGCCCAAAATATATGGGCGCTTTTTCCGGAATGAGTAATCCGGAAAACTTTCCATTTGGGCTTTTTTTTTGGGTACCAGGYGGCCCCCAGGTGGACAAACTTTTTCCTTCTTTTTGTATAGGCAGGAAGGACAGATGCAAAATTTCGAAGATTCGAAATTTATCTATCCACCCAAATAATTGACAATTATAAATGACACGTGTCAGGCCGGATGGACATCTGGACGGTTGCCACCTGCGCGCCGTTGGCGATGGAGAAGAAGAAGAAGAACTTGAAATTCTGATAGGAGGGAGTCTTCTAAGGAGGCGGATATGAAGATAGTGTGATGTGTGTGTTATGGTTGTTAGGAAGGACGGGGAAACGAGTCAGGGAAGCTGATCTAGGCGGTGACCGTGGCCGAAGGTCCCAGCTACAGTAACCTAGAAATATTTTTCCGGATATTTTATCTCGATTTTTGTTACTGCAGTGGTCGTTGTACCAAAACCCGCCAAAAAAATCATGCAAAACTGTATAATGCAGATTTTTTTCTCTTGAATAGAGAGTAGAAATTACCACGGATCCCATCACTGCCAGTCACCATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>124 105 104 90 86 77 73 69 55 41 31 28 20 15 12 11 11 10 8 6 5 5 4 4 2 2 2</canonical_bands>
                <polymorphic_bands>124 116 104 90 86 77 73 69 55 41 31 28 20 15 12 11 10 8 6 5 5 4 4 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>ACCWGGT</site>
                <isoschizomers>
                    <enzyme>MabI</enzyme>
                    <enzyme>SexAI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTCGTCGGAAGTATTTAGG</pcr_primer_p1>
		<pcr_primer_p2>TCAATTATTTGGGTGGATAGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACTCGTCGGAAGTATTTAGGGTGAATGAGACAAATTGGTTCCACTGCTGAATGGAGAGAGTTGGAACGCCCAAAATATATGGGCGCTTTTTCCGGAATGAGTAATCCGGAAAACTTTCCATTTGGGCTTTTTTTTTGGGTACCAGGTGGCCCCCAGGTGGACAAACTTTTTCCTTCTTTTTGTATAGGCAGGAAGGACAGATGCAAAATTTCGAAGATTCGAAATTTATCTATCCACCCAAATAATTGA</canonical_amplicon>
		<polymorphic_amplicon>GACTCGTCGGAAGTATTTAGGGTGAATGAGACAAATTGGTTCCACTGCTGAATGGAGAGAGTTGGAACGCCCAAAATATATGGGCGCTTTTTCCGGAATGAGTAATCCGGAAAACTTTCCATTTGGGCTTTTTTTTTGGGTACCAGGYGGCCCCCAGGTGGACAAACTTTTTCCTTCTTTTTGTATAGGCAGGAAGGACAGATGCAAAATTTCGAAGATTCGAAATTTATCTATCCACCCAAATAATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8275</snp_id>
        <super_contig>c004400954.Contig1</super_contig>
        <contig_pos>3896</contig_pos>
        <strand></strand>
        <context>AAACTTTTTC[C/T]KTCTTTTTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGGCTTTTTTTTTGGGTACCAGGTGGCCCCCAGGTGGACAAACTTTTTC</left_flank>
        <right_flank>TTCTTTTTGTATAGGCAGGAAGGACAGATGCAAAATTTCGAAGATTCGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGATAATTGAGCTCGAATTGCACTTATAGGGTGGGCTTTTATTGGAGCGTTTACAGTAGGAATTGGAGTTCATGAACGGACTCAGCAATCTTGATATTGCCACGTGGAAAAATCATCTTACGTATAGAGCTAAAATTCCGGCAATTTCCGGTCGCTTTTTTCAAAAATTGAATTTTTTCAAAAATTCAAAGCGTACCGGAACCCCAGCCACCCCCAACGAAAACACCTGCATTCTTTCCTCCCCCCAAACTAATAAATATTCAAATCCCCTCCTTATTTGTCAGTCGGCCTAACTTAGCGCGCGCGGCGCAAGTTCAAAGGAGACGACTCGTCGGAAGTATTTAGGGTGAATGAGACAAATTGGTTCCACTGCTGAATGGAGAGAGTTGGAACGCCCAAAATATATGGGCGCTTTTTCCGGAATGAGTAATCCGGAAAACTTTCCATTTGGGCTTTTTTTTTGGGTACCAGGTGGCCCCCAGGTGGACAAACTTTTTCCTTCTTTTTGTATAGGCAGGAAGGACAGATGCAAAATTTCGAAGATTCGAAATTTATCTATCCACCCAAATAATTGACAATTATAAATGACACGTGTCAGGCCGGATGGACATCTGGACGGTTGCCACCTGCGCGCCGTTGGCGATGGAGAAGAAGAAGAAGAACTTGAAATTCTGATAGGAGGGAGTCTTCTAAGGAGGCGGATATGAAGATAGTGTGATGTGTGTGTTATGGTTGTTAGGAAGGACGGGGAAACGAGTCAGGGAAGCTGATCTAGGCGGTGACCGTGGCCGAAGGTCCCAGCTACAGTAACCTAGAAATATTTTTCCGGATATTTTATCTCGATTTTTGTTACTGCAGTGGTCGTTGTACCAAAACCCGCCAAAAAAATCATGCAAAACTGTATAATGCAGATTTTTTTCTCTTGAATAGAGAGTAGAAATTACCACGGATCCCATCACTGCCAGTCACCATGAACGGCACGGTACCGCCGGTACCCCC</canonical>
            <polymorphic>TAGATAATTGAGCTCGAATTGCACTTATAGGGTGGGCTTTTATTGGAGCGTTTACAGTAGGAATTGGAGTTCATGAACGGACTCAGCAATCTTGATATTGCCACGTGGAAAAATCATCTTACGTATAGAGCTAAAATTCCGGCAATTTCCGGTCGCTTTTTTCAAAAATTGAATTTTTTCAAAAATTCAAAGCGTACCGGAACCCCAGCCACCCCCAACGAAAACACCTGCATTCTTTCCTCCCCCCAAACTAATAAATATTCAAATCCCCTCCTTATTTGTCAGTCGGCCTAACTTAGCGCGCGCGGCGCAAGTTCAAAGGAGACGACTCGTCGGAAGTATTTAGGGTGAATGAGACAAATTGGTTCCACTGCTGAATGGAGAGAGTTGGAACGCCCAAAATATATGGGCGCTTTTTCCGGAATGAGTAATCCGGAAAACTTTCCATTTGGGCTTTTTTTTTGGGTACCAGGTGGCCCCCAGGTGGACAAACTTTTTCYTTCTTTTTGTATAGGCAGGAAGGACAGATGCAAAATTTCGAAGATTCGAAATTTATCTATCCACCCAAATAATTGACAATTATAAATGACACGTGTCAGGCCGGATGGACATCTGGACGGTTGCCACCTGCGCGCCGTTGGCGATGGAGAAGAAGAAGAAGAACTTGAAATTCTGATAGGAGGGAGTCTTCTAAGGAGGCGGATATGAAGATAGTGTGATGTGTGTGTTATGGTTGTTAGGAAGGACGGGGAAACGAGTCAGGGAAGCTGATCTAGGCGGTGACCGTGGCCGAAGGTCCCAGCTACAGTAACCTAGAAATATTTTTCCGGATATTTTATCTCGATTTTTGTTACTGCAGTGGTCGTTGTACCAAAACCCGCCAAAAAAATCATGCAAAACTGTATAATGCAGATTTTTTTCTCTTGAATAGAGAGTAGAAATTACCACGGATCCCATCACTGCCAGTCACCATGAACGGCACGGTACCGCCGGTACCCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTCGTCGGAAGTATTTAGG</pcr_primer_p1>
		<pcr_primer_p2>TCAATTATTTGGGTGGATAGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACTCGTCGGAAGTATTTAGGGTGAATGAGACAAATTGGTTCCACTGCTGAATGGAGAGAGTTGGAACGCCCAAAATATATGGGCGCTTTTTCCGGAATGAGTAATCCGGAAAACTTTCCATTTGGGCTTTTTTTTTGGGTACCAGGTGGCCCCCAGGTGGACAAACTTTTTCCTTCTTTTTGTATAGGCAGGAAGGACAGATGCAAAATTTCGAAGATTCGAAATTTATCTATCCACCCAAATAATTGA</canonical_amplicon>
		<polymorphic_amplicon>GACTCGTCGGAAGTATTTAGGGTGAATGAGACAAATTGGTTCCACTGCTGAATGGAGAGAGTTGGAACGCCCAAAATATATGGGCGCTTTTTCCGGAATGAGTAATCCGGAAAACTTTCCATTTGGGCTTTTTTTTTGGGTACCAGGTGGCCCCCAGGTGGACAAACTTTTTCYTTCTTTTTGTATAGGCAGGAAGGACAGATGCAAAATTTCGAAGATTCGAAATTTATCTATCCACCCAAATAATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8276</snp_id>
        <super_contig>c004400954.Contig1</super_contig>
        <contig_pos>3897</contig_pos>
        <strand>+</strand>
        <context>AACTTTTTCY[G/T]TCTTTTTGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGGCTTTTTTTTTGGGTACCAGGTGGCCCCCAGGTGGACAAACTTTTTCC</left_flank>
        <right_flank>TCTTTTTGTATAGGCAGGAAGGACAGATGCAAAATTTCGAAGATTCGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATAATTGAGCTCGAATTGCACTTATAGGGTGGGCTTTTATTGGAGCGTTTACAGTAGGAATTGGAGTTCATGAACGGACTCAGCAATCTTGATATTGCCACGTGGAAAAATCATCTTACGTATAGAGCTAAAATTCCGGCAATTTCCGGTCGCTTTTTTCAAAAATTGAATTTTTTCAAAAATTCAAAGCGTACCGGAACCCCAGCCACCCCCAACGAAAACACCTGCATTCTTTCCTCCCCCCAAACTAATAAATATTCAAATCCCCTCCTTATTTGTCAGTCGGCCTAACTTAGCGCGCGCGGCGCAAGTTCAAAGGAGACGACTCGTCGGAAGTATTTAGGGTGAATGAGACAAATTGGTTCCACTGCTGAATGGAGAGAGTTGGAACGCCCAAAATATATGGGCGCTTTTTCCGGAATGAGTAATCCGGAAAACTTTCCATTTGGGCTTTTTTTTTGGGTACCAGGTGGCCCCCAGGTGGACAAACTTTTTCCTTCTTTTTGTATAGGCAGGAAGGACAGATGCAAAATTTCGAAGATTCGAAATTTATCTATCCACCCAAATAATTGACAATTATAAATGACACGTGTCAGGCCGGATGGACATCTGGACGGTTGCCACCTGCGCGCCGTTGGCGATGGAGAAGAAGAAGAAGAACTTGAAATTCTGATAGGAGGGAGTCTTCTAAGGAGGCGGATATGAAGATAGTGTGATGTGTGTGTTATGGTTGTTAGGAAGGACGGGGAAACGAGTCAGGGAAGCTGATCTAGGCGGTGACCGTGGCCGAAGGTCCCAGCTACAGTAACCTAGAAATATTTTTCCGGATATTTTATCTCGATTTTTGTTACTGCAGTGGTCGTTGTACCAAAACCCGCCAAAAAAATCATGCAAAACTGTATAATGCAGATTTTTTTCTCTTGAATAGAGAGTAGAAATTACCACGGATCCCATCACTGCCAGTCACCATGAACGGCACGGTACCGCCGGTACCCCCA</canonical>
            <polymorphic>AGATAATTGAGCTCGAATTGCACTTATAGGGTGGGCTTTTATTGGAGCGTTTACAGTAGGAATTGGAGTTCATGAACGGACTCAGCAATCTTGATATTGCCACGTGGAAAAATCATCTTACGTATAGAGCTAAAATTCCGGCAATTTCCGGTCGCTTTTTTCAAAAATTGAATTTTTTCAAAAATTCAAAGCGTACCGGAACCCCAGCCACCCCCAACGAAAACACCTGCATTCTTTCCTCCCCCCAAACTAATAAATATTCAAATCCCCTCCTTATTTGTCAGTCGGCCTAACTTAGCGCGCGCGGCGCAAGTTCAAAGGAGACGACTCGTCGGAAGTATTTAGGGTGAATGAGACAAATTGGTTCCACTGCTGAATGGAGAGAGTTGGAACGCCCAAAATATATGGGCGCTTTTTCCGGAATGAGTAATCCGGAAAACTTTCCATTTGGGCTTTTTTTTTGGGTACCAGGTGGCCCCCAGGTGGACAAACTTTTTCCKTCTTTTTGTATAGGCAGGAAGGACAGATGCAAAATTTCGAAGATTCGAAATTTATCTATCCACCCAAATAATTGACAATTATAAATGACACGTGTCAGGCCGGATGGACATCTGGACGGTTGCCACCTGCGCGCCGTTGGCGATGGAGAAGAAGAAGAAGAACTTGAAATTCTGATAGGAGGGAGTCTTCTAAGGAGGCGGATATGAAGATAGTGTGATGTGTGTGTTATGGTTGTTAGGAAGGACGGGGAAACGAGTCAGGGAAGCTGATCTAGGCGGTGACCGTGGCCGAAGGTCCCAGCTACAGTAACCTAGAAATATTTTTCCGGATATTTTATCTCGATTTTTGTTACTGCAGTGGTCGTTGTACCAAAACCCGCCAAAAAAATCATGCAAAACTGTATAATGCAGATTTTTTTCTCTTGAATAGAGAGTAGAAATTACCACGGATCCCATCACTGCCAGTCACCATGAACGGCACGGTACCGCCGGTACCCCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTCGTCGGAAGTATTTAGG</pcr_primer_p1>
		<pcr_primer_p2>TCAATTATTTGGGTGGATAGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACTCGTCGGAAGTATTTAGGGTGAATGAGACAAATTGGTTCCACTGCTGAATGGAGAGAGTTGGAACGCCCAAAATATATGGGCGCTTTTTCCGGAATGAGTAATCCGGAAAACTTTCCATTTGGGCTTTTTTTTTGGGTACCAGGTGGCCCCCAGGTGGACAAACTTTTTCCTTCTTTTTGTATAGGCAGGAAGGACAGATGCAAAATTTCGAAGATTCGAAATTTATCTATCCACCCAAATAATTGA</canonical_amplicon>
		<polymorphic_amplicon>GACTCGTCGGAAGTATTTAGGGTGAATGAGACAAATTGGTTCCACTGCTGAATGGAGAGAGTTGGAACGCCCAAAATATATGGGCGCTTTTTCCGGAATGAGTAATCCGGAAAACTTTCCATTTGGGCTTTTTTTTTGGGTACCAGGTGGCCCCCAGGTGGACAAACTTTTTCCKTCTTTTTGTATAGGCAGGAAGGACAGATGCAAAATTTCGAAGATTCGAAATTTATCTATCCACCCAAATAATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8277</snp_id>
        <super_contig>c004400954.Contig1</super_contig>
        <contig_pos>3916</contig_pos>
        <strand>+</strand>
        <context>TATAGGCAGG[A/G]AGGACAGATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGGTGGCCCCCAGGTGGACAAACTTTTTCCTTCTTTTTGTATAGGCAGG</left_flank>
        <right_flank>AGGACAGATGCAAAATTTCGAAGATTCGAAATTTATCTATCCACCCAAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCACTTATAGGGTGGGCTTTTATTGGAGCGTTTACAGTAGGAATTGGAGTTCATGAACGGACTCAGCAATCTTGATATTGCCACGTGGAAAAATCATCTTACGTATAGAGCTAAAATTCCGGCAATTTCCGGTCGCTTTTTTCAAAAATTGAATTTTTTCAAAAATTCAAAGCGTACCGGAACCCCAGCCACCCCCAACGAAAACACCTGCATTCTTTCCTCCCCCCAAACTAATAAATATTCAAATCCCCTCCTTATTTGTCAGTCGGCCTAACTTAGCGCGCGCGGCGCAAGTTCAAAGGAGACGACTCGTCGGAAGTATTTAGGGTGAATGAGACAAATTGGTTCCACTGCTGAATGGAGAGAGTTGGAACGCCCAAAATATATGGGCGCTTTTTCCGGAATGAGTAATCCGGAAAACTTTCCATTTGGGCTTTTTTTTTGGGTACCAGGTGGCCCCCAGGTGGACAAACTTTTTCCTTCTTTTTGTATAGGCAGGAAGGACAGATGCAAAATTTCGAAGATTCGAAATTTATCTATCCACCCAAATAATTGACAATTATAAATGACACGTGTCAGGCCGGATGGACATCTGGACGGTTGCCACCTGCGCGCCGTTGGCGATGGAGAAGAAGAAGAAGAACTTGAAATTCTGATAGGAGGGAGTCTTCTAAGGAGGCGGATATGAAGATAGTGTGATGTGTGTGTTATGGTTGTTAGGAAGGACGGGGAAACGAGTCAGGGAAGCTGATCTAGGCGGTGACCGTGGCCGAAGGTCCCAGCTACAGTAACCTAGAAATATTTTTCCGGATATTTTATCTCGATTTTTGTTACTGCAGTGGTCGTTGTACCAAAACCCGCCAAAAAAATCATGCAAAACTGTATAATGCAGATTTTTTTCTCTTGAATAGAGAGTAGAAATTACCACGGATCCCATCACTGCCAGTCACCATGAACGGCACGGTACCGCCGGTACCCCCAGAAATAGAAACCCGAATAT</canonical>
            <polymorphic>GCACTTATAGGGTGGGCTTTTATTGGAGCGTTTACAGTAGGAATTGGAGTTCATGAACGGACTCAGCAATCTTGATATTGCCACGTGGAAAAATCATCTTACGTATAGAGCTAAAATTCCGGCAATTTCCGGTCGCTTTTTTCAAAAATTGAATTTTTTCAAAAATTCAAAGCGTACCGGAACCCCAGCCACCCCCAACGAAAACACCTGCATTCTTTCCTCCCCCCAAACTAATAAATATTCAAATCCCCTCCTTATTTGTCAGTCGGCCTAACTTAGCGCGCGCGGCGCAAGTTCAAAGGAGACGACTCGTCGGAAGTATTTAGGGTGAATGAGACAAATTGGTTCCACTGCTGAATGGAGAGAGTTGGAACGCCCAAAATATATGGGCGCTTTTTCCGGAATGAGTAATCCGGAAAACTTTCCATTTGGGCTTTTTTTTTGGGTACCAGGTGGCCCCCAGGTGGACAAACTTTTTCCTTCTTTTTGTATAGGCAGGRAGGACAGATGCAAAATTTCGAAGATTCGAAATTTATCTATCCACCCAAATAATTGACAATTATAAATGACACGTGTCAGGCCGGATGGACATCTGGACGGTTGCCACCTGCGCGCCGTTGGCGATGGAGAAGAAGAAGAAGAACTTGAAATTCTGATAGGAGGGAGTCTTCTAAGGAGGCGGATATGAAGATAGTGTGATGTGTGTGTTATGGTTGTTAGGAAGGACGGGGAAACGAGTCAGGGAAGCTGATCTAGGCGGTGACCGTGGCCGAAGGTCCCAGCTACAGTAACCTAGAAATATTTTTCCGGATATTTTATCTCGATTTTTGTTACTGCAGTGGTCGTTGTACCAAAACCCGCCAAAAAAATCATGCAAAACTGTATAATGCAGATTTTTTTCTCTTGAATAGAGAGTAGAAATTACCACGGATCCCATCACTGCCAGTCACCATGAACGGCACGGTACCGCCGGTACCCCCAGAAATAGAAACCCGAATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTCGTCGGAAGTATTTAGG</pcr_primer_p1>
		<pcr_primer_p2>TCAATTATTTGGGTGGATAGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACTCGTCGGAAGTATTTAGGGTGAATGAGACAAATTGGTTCCACTGCTGAATGGAGAGAGTTGGAACGCCCAAAATATATGGGCGCTTTTTCCGGAATGAGTAATCCGGAAAACTTTCCATTTGGGCTTTTTTTTTGGGTACCAGGTGGCCCCCAGGTGGACAAACTTTTTCCTTCTTTTTGTATAGGCAGGAAGGACAGATGCAAAATTTCGAAGATTCGAAATTTATCTATCCACCCAAATAATTGA</canonical_amplicon>
		<polymorphic_amplicon>GACTCGTCGGAAGTATTTAGGGTGAATGAGACAAATTGGTTCCACTGCTGAATGGAGAGAGTTGGAACGCCCAAAATATATGGGCGCTTTTTCCGGAATGAGTAATCCGGAAAACTTTCCATTTGGGCTTTTTTTTTGGGTACCAGGTGGCCCCCAGGTGGACAAACTTTTTCCTTCTTTTTGTATAGGCAGGRAGGACAGATGCAAAATTTCGAAGATTCGAAATTTATCTATCCACCCAAATAATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8278</snp_id>
        <super_contig>c004400954.Contig1</super_contig>
        <contig_pos>5919</contig_pos>
        <strand>+</strand>
        <context>TGGCAGAAAA[A/G]AGCATATAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGGGCGGTGAAAAAGAGCGCAAATCGAGAAAAAACGCTTGGCAGAAAA</left_flank>
        <right_flank>AGCATATAAAAAAGAAGTATTTAATAGCTCTGCGTCCCATAAAAAGTCGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAAATGAAACCTTTATAAATTGAGGGACATAAAATGAAAACCGGCGATAAAATAAGAGGCCCCGAATCATCATCAAATCATCAAAAACTCGTTTTGACAGATGCTCGTCGGCGCCGACTCCGAGTTCTTCCCTTCTCCCGTGTTACGGACCGGGGGAGCTCTTCCGATTGAAACATGTGCAGAAAGACAGAGAAGAAGACGACTAACAACAGATGTGTTGAGAAGCGGGGCAGCGTCAATATTGAAGGAATCGAAAAATATGAAAAAAAAGAAAAGAGAATGAAATTTAAAAAATCGACAAGATTTCATAGATTCCTTTGCTTCTTTTATGACAATTTTTGCTTTTGTACACCCCCGCTTTTGTATTTTTTTTCTGTAGAAAAATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCCGAAAGTGTTCTCAAAATATTTTCTGGGCGGTGAAAAAGAGCGCAAATCGAGAAAAAACGCTTGGCAGAAAAGAGCATATAAAAAAGAAGTATTTAATAGCTCTGCGTCCCATAAAAAGTCGTTATTCGTGCGAGATTAACTCGGAATTGGTTTCGATGGCAAAAAAAAAGGAAAGCAGGACTTTTTCATGAACACTAAAAGTGTATATTTTTCAGAATTTATGGTCATAAATGCGCTCGACAGCGAACGTACTGTAATACTACGGTAAATTAGCGTTGAGCTACGACGCGAAGGCTTCAAATTAAACGGCTATTCAGAGGTGCTTGAATTGGAAAAATAGCGGAAAAAGTACACAAAATGGGTTACTTTTCCAAATAATTTCAAAAGTTTCGGCTAATTTTCCACAATATGACACCTGCAAAAAATGGGGACACATTTTGCTTAGAACGACTCAAATGACCCAGAAAACACACATACACACCTGAAGATATCAAATTCTGCAGGTGTTCTTTTTTTAGATTTCACTTTTTTCTTAACGAAAACGAAACCTACCGTAACCTAGAAATATTCGA</canonical>
            <polymorphic>TAAAAATGAAACCTTTATAAATTGAGGGACATAAAATGAAAACCGGCGATAAAATAAGAGGCCCCGAATCATCATCAAATCATCAAAAACTCGTTTTGACAGATGCTCGTCGGCGCCGACTCCGAGTTCTTCCCTTCTCCCGTGTTACGGACCGGGGGAGCTCTTCCGATTGAAACATGTGCAGAAAGACAGAGAAGAAGACGACTAACAACAGATGTGTTGAGAAGCGGGGCAGCGTCAATATTGAAGGAATCGAAAAATATGAAAAAAAAGAAAAGAGAATGAAATTTAAAAAATCGACAAGATTTCATAGATTCCTTTGCTTCTTTTATGACAATTTTTGCTTTTGTACACCCCCGCTTTTGTATTTTTTTTCTGTAGAAAAATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCCGAAAGTGTTCTCAAAATATTTTCTGGGCGGTGAAAAAGAGCGCAAATCGAGAAAAAACGCTTGGCAGAAAARAGCATATAAAAAAGAAGTATTTAATAGCTCTGCGTCCCATAAAAAGTCGTTATTCGTGCGAGATTAACTCGGAATTGGTTTCGATGGCAAAAAAAAAGGAAAGCAGGACTTTTTCATGAACACTAAAAGTGTATATTTTTCAGAATTTATGGTCATAAATGCGCTCGACAGCGAACGTACTGTAATACTACGGTAAATTAGCGTTGAGCTACGACGCGAAGGCTTCAAATTAAACGGCTATTCAGAGGTGCTTGAATTGGAAAAATAGCGGAAAAAGTACACAAAATGGGTTACTTTTCCAAATAATTTCAAAAGTTTCGGCTAATTTTCCACAATATGACACCTGCAAAAAATGGGGACACATTTTGCTTAGAACGACTCAAATGACCCAGAAAACACACATACACACCTGAAGATATCAAATTCTGCAGGTGTTCTTTTTTTAGATTTCACTTTTTTCTTAACGAAAACGAAACCTACCGTAACCTAGAAATATTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTAAAATTTGCATGAGAATAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTAGTGTTCATGAAAAAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCCGAAAGTGTTCTCAAAATATTTTCTGGGCGGTGAAAAAGAGCGCAAATCGAGAAAAAACGCTTGGCAGAAAAGAGCATATAAAAAAGAAGTATTTAATAGCTCTGCGTCCCATAAAAAGTCGTTATTCGTGCGAGATTAACTCGGAATTGGTTTCGATGGCAAAAAAAAAGGAAAGCAGGACTTTTTCATGAACACTAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCCGAAAGTGTTCTCAAAATATTTTCTGGGCGGTGAAAAAGAGCGCAAATCGAGAAAAAACGCTTGGCAGAAAARAGCATATAAAAAAGAAGTATTTAATAGCTCTGCGTCCCATAAAAAGTCGTTATTCGTGCGAGATTAACTCGGAATTGGTTTCGATGGCAAAAAAAAAGGAAAGCAGGACTTTTTCATGAACACTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8279</snp_id>
        <super_contig>c004400954.Contig1</super_contig>
        <contig_pos>5854</contig_pos>
        <strand>+</strand>
        <context>GCCCGAAAGT[C/G]TTCTCAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCCGAAAGT</left_flank>
        <right_flank>TTCTCAAAATATTTTCTGGGCGGTGAAAAAGAGCGCAAATCGAGAAAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTCGAAAAAAAAAGCGAAAAATCTAACGAAAAAATGTCAAAAGTTTGCCTAAGAGACCGCCATAAAAATGAAACCTTTATAAATTGAGGGACATAAAATGAAAACCGGCGATAAAATAAGAGGCCCCGAATCATCATCAAATCATCAAAAACTCGTTTTGACAGATGCTCGTCGGCGCCGACTCCGAGTTCTTCCCTTCTCCCGTGTTACGGACCGGGGGAGCTCTTCCGATTGAAACATGTGCAGAAAGACAGAGAAGAAGACGACTAACAACAGATGTGTTGAGAAGCGGGGCAGCGTCAATATTGAAGGAATCGAAAAATATGAAAAAAAAGAAAAGAGAATGAAATTTAAAAAATCGACAAGATTTCATAGATTCCTTTGCTTCTTTTATGACAATTTTTGCTTTTGTACACCCCCGCTTTTGTATTTTTTTTCTGTAGAAAAATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCCGAAAGTGTTCTCAAAATATTTTCTGGGCGGTGAAAAAGAGCGCAAATCGAGAAAAAACGCTTGGCAGAAAAGAGCATATAAAAAAGAAGTATTTAATAGCTCTGCGTCCCATAAAAAGTCGTTATTCGTGCGAGATTAACTCGGAATTGGTTTCGATGGCAAAAAAAAAGGAAAGCAGGACTTTTTCATGAACACTAAAAGTGTATATTTTTCAGAATTTATGGTCATAAATGCGCTCGACAGCGAACGTACTGTAATACTACGGTAAATTAGCGTTGAGCTACGACGCGAAGGCTTCAAATTAAACGGCTATTCAGAGGTGCTTGAATTGGAAAAATAGCGGAAAAAGTACACAAAATGGGTTACTTTTCCAAATAATTTCAAAAGTTTCGGCTAATTTTCCACAATATGACACCTGCAAAAAATGGGGACACATTTTGCTTAGAACGACTCAAATGACCCAGAAAACACACATACACACCTGAAGATATCAAATTCTGCAGGTGT</canonical>
            <polymorphic>GTTTTCGAAAAAAAAAGCGAAAAATCTAACGAAAAAATGTCAAAAGTTTGCCTAAGAGACCGCCATAAAAATGAAACCTTTATAAATTGAGGGACATAAAATGAAAACCGGCGATAAAATAAGAGGCCCCGAATCATCATCAAATCATCAAAAACTCGTTTTGACAGATGCTCGTCGGCGCCGACTCCGAGTTCTTCCCTTCTCCCGTGTTACGGACCGGGGGAGCTCTTCCGATTGAAACATGTGCAGAAAGACAGAGAAGAAGACGACTAACAACAGATGTGTTGAGAAGCGGGGCAGCGTCAATATTGAAGGAATCGAAAAATATGAAAAAAAAGAAAAGAGAATGAAATTTAAAAAATCGACAAGATTTCATAGATTCCTTTGCTTCTTTTATGACAATTTTTGCTTTTGTACACCCCCGCTTTTGTATTTTTTTTCTGTAGAAAAATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCCGAAAGTSTTCTCAAAATATTTTCTGGGCGGTGAAAAAGAGCGCAAATCGAGAAAAAACGCTTGGCAGAAAAGAGCATATAAAAAAGAAGTATTTAATAGCTCTGCGTCCCATAAAAAGTCGTTATTCGTGCGAGATTAACTCGGAATTGGTTTCGATGGCAAAAAAAAAGGAAAGCAGGACTTTTTCATGAACACTAAAAGTGTATATTTTTCAGAATTTATGGTCATAAATGCGCTCGACAGCGAACGTACTGTAATACTACGGTAAATTAGCGTTGAGCTACGACGCGAAGGCTTCAAATTAAACGGCTATTCAGAGGTGCTTGAATTGGAAAAATAGCGGAAAAAGTACACAAAATGGGTTACTTTTCCAAATAATTTCAAAAGTTTCGGCTAATTTTCCACAATATGACACCTGCAAAAAATGGGGACACATTTTGCTTAGAACGACTCAAATGACCCAGAAAACACACATACACACCTGAAGATATCAAATTCTGCAGGTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>209 134 119 98 82 64 51 38 37 37 31 26 25 19 10 9 6 2 2 1</canonical_bands>
                <polymorphic_bands>209 134 119 107 98 64 51 38 37 37 31 26 19 10 9 6 2 2 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATGGTAAAATTTGCATGAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTAGTGTTCATGAAAAAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCCGAAAGTGTTCTCAAAATATTTTCTGGGCGGTGAAAAAGAGCGCAAATCGAGAAAAAACGCTTGGCAGAAAAGAGCATATAAAAAAGAAGTATTTAATAGCTCTGCGTCCCATAAAAAGTCGTTATTCGTGCGAGATTAACTCGGAATTGGTTTCGATGGCAAAAAAAAAGGAAAGCAGGACTTTTTCATGAACACTAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCCGAAAGTSTTCTCAAAATATTTTCTGGGCGGTGAAAAAGAGCGCAAATCGAGAAAAAACGCTTGGCAGAAAAGAGCATATAAAAAAGAAGTATTTAATAGCTCTGCGTCCCATAAAAAGTCGTTATTCGTGCGAGATTAACTCGGAATTGGTTTCGATGGCAAAAAAAAAGGAAAGCAGGACTTTTTCATGAACACTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8280</snp_id>
        <super_contig>c004400954.Contig1</super_contig>
        <contig_pos>5746</contig_pos>
        <strand></strand>
        <context>CCTTTKCTTC[T/C]TTTATGACAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGAGAATGAAATTTAAAAAATCGACAAGATTTCATAGATTCCTTTGCTTC</left_flank>
        <right_flank>TTTATGACAATTTTTGCTTTTGTACACCCCCGCTTTTGTATTTTTTTTCT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGCGAAATATAATTTTCAAAAATTGCACCGTAATCTTTAAAGGTTCACAACAAAAAACTTGATTCGGTTTCGCAGCGAATCTAAATTTTTGTAATTTTTCACAAGAGTTTTCGAAAAAAAAAGCGAAAAATCTAACGAAAAAATGTCAAAAGTTTGCCTAAGAGACCGCCATAAAAATGAAACCTTTATAAATTGAGGGACATAAAATGAAAACCGGCGATAAAATAAGAGGCCCCGAATCATCATCAAATCATCAAAAACTCGTTTTGACAGATGCTCGTCGGCGCCGACTCCGAGTTCTTCCCTTCTCCCGTGTTACGGACCGGGGGAGCTCTTCCGATTGAAACATGTGCAGAAAGACAGAGAAGAAGACGACTAACAACAGATGTGTTGAGAAGCGGGGCAGCGTCAATATTGAAGGAATCGAAAAATATGAAAAAAAAGAAAAGAGAATGAAATTTAAAAAATCGACAAGATTTCATAGATTCCTTTGCTTCTTTTATGACAATTTTTGCTTTTGTACACCCCCGCTTTTGTATTTTTTTTCTGTAGAAAAATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCCGAAAGTGTTCTCAAAATATTTTCTGGGCGGTGAAAAAGAGCGCAAATCGAGAAAAAACGCTTGGCAGAAAAGAGCATATAAAAAAGAAGTATTTAATAGCTCTGCGTCCCATAAAAAGTCGTTATTCGTGCGAGATTAACTCGGAATTGGTTTCGATGGCAAAAAAAAAGGAAAGCAGGACTTTTTCATGAACACTAAAAGTGTATATTTTTCAGAATTTATGGTCATAAATGCGCTCGACAGCGAACGTACTGTAATACTACGGTAAATTAGCGTTGAGCTACGACGCGAAGGCTTCAAATTAAACGGCTATTCAGAGGTGCTTGAATTGGAAAAATAGCGGAAAAAGTACACAAAATGGGTTACTTTTCCAAATAATTTCAAAAGTTTCGGCTAATT</canonical>
            <polymorphic>GGAGCGAAATATAATTTTCAAAAATTGCACCGTAATCTTTAAAGGTTCACAACAAAAAACTTGATTCGGTTTCGCAGCGAATCTAAATTTTTGTAATTTTTCACAAGAGTTTTCGAAAAAAAAAGCGAAAAATCTAACGAAAAAATGTCAAAAGTTTGCCTAAGAGACCGCCATAAAAATGAAACCTTTATAAATTGAGGGACATAAAATGAAAACCGGCGATAAAATAAGAGGCCCCGAATCATCATCAAATCATCAAAAACTCGTTTTGACAGATGCTCGTCGGCGCCGACTCCGAGTTCTTCCCTTCTCCCGTGTTACGGACCGGGGGAGCTCTTCCGATTGAAACATGTGCAGAAAGACAGAGAAGAAGACGACTAACAACAGATGTGTTGAGAAGCGGGGCAGCGTCAATATTGAAGGAATCGAAAAATATGAAAAAAAAGAAAAGAGAATGAAATTTAAAAAATCGACAAGATTTCATAGATTCCTTTGCTTCYTTTATGACAATTTTTGCTTTTGTACACCCCCGCTTTTGTATTTTTTTTCTGTAGAAAAATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCCGAAAGTGTTCTCAAAATATTTTCTGGGCGGTGAAAAAGAGCGCAAATCGAGAAAAAACGCTTGGCAGAAAAGAGCATATAAAAAAGAAGTATTTAATAGCTCTGCGTCCCATAAAAAGTCGTTATTCGTGCGAGATTAACTCGGAATTGGTTTCGATGGCAAAAAAAAAGGAAAGCAGGACTTTTTCATGAACACTAAAAGTGTATATTTTTCAGAATTTATGGTCATAAATGCGCTCGACAGCGAACGTACTGTAATACTACGGTAAATTAGCGTTGAGCTACGACGCGAAGGCTTCAAATTAAACGGCTATTCAGAGGTGCTTGAATTGGAAAAATAGCGGAAAAAGTACACAAAATGGGTTACTTTTCCAAATAATTTCAAAAGTTTCGGCTAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAGACAGAGAAGAAGACGAC</pcr_primer_p1>
		<pcr_primer_p2>GGGCTCTATTCAAAACAAACTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAAAGACAGAGAAGAAGACGACTAACAACAGATGTGTTGAGAAGCGGGGCAGCGTCAATATTGAAGGAATCGAAAAATATGAAAAAAAAGAAAAGAGAATGAAATTTAAAAAATCGACAAGATTTCATAGATTCCTTTGCTTCTTTTATGACAATTTTTGCTTTTGTACACCCCCGCTTTTGTATTTTTTTTCTGTAGAAAAATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCC</canonical_amplicon>
		<polymorphic_amplicon>AGAAAGACAGAGAAGAAGACGACTAACAACAGATGTGTTGAGAAGCGGGGCAGCGTCAATATTGAAGGAATCGAAAAATATGAAAAAAAAGAAAAGAGAATGAAATTTAAAAAATCGACAAGATTTCATAGATTCCTTTGCTTCYTTTATGACAATTTTTGCTTTTGTACACCCCCGCTTTTGTATTTTTTTTCTGTAGAAAAATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8281</snp_id>
        <super_contig>c004400954.Contig1</super_contig>
        <contig_pos>5741</contig_pos>
        <strand></strand>
        <context>AGATTCCTTT[G/T]CTTCYTTTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGAAAAGAGAATGAAATTTAAAAAATCGACAAGATTTCATAGATTCCTTT</left_flank>
        <right_flank>CTTCTTTTATGACAATTTTTGCTTTTGTACACCCCCGCTTTTGTATTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTTGGAGCGAAATATAATTTTCAAAAATTGCACCGTAATCTTTAAAGGTTCACAACAAAAAACTTGATTCGGTTTCGCAGCGAATCTAAATTTTTGTAATTTTTCACAAGAGTTTTCGAAAAAAAAAGCGAAAAATCTAACGAAAAAATGTCAAAAGTTTGCCTAAGAGACCGCCATAAAAATGAAACCTTTATAAATTGAGGGACATAAAATGAAAACCGGCGATAAAATAAGAGGCCCCGAATCATCATCAAATCATCAAAAACTCGTTTTGACAGATGCTCGTCGGCGCCGACTCCGAGTTCTTCCCTTCTCCCGTGTTACGGACCGGGGGAGCTCTTCCGATTGAAACATGTGCAGAAAGACAGAGAAGAAGACGACTAACAACAGATGTGTTGAGAAGCGGGGCAGCGTCAATATTGAAGGAATCGAAAAATATGAAAAAAAAGAAAAGAGAATGAAATTTAAAAAATCGACAAGATTTCATAGATTCCTTTGCTTCTTTTATGACAATTTTTGCTTTTGTACACCCCCGCTTTTGTATTTTTTTTCTGTAGAAAAATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCCGAAAGTGTTCTCAAAATATTTTCTGGGCGGTGAAAAAGAGCGCAAATCGAGAAAAAACGCTTGGCAGAAAAGAGCATATAAAAAAGAAGTATTTAATAGCTCTGCGTCCCATAAAAAGTCGTTATTCGTGCGAGATTAACTCGGAATTGGTTTCGATGGCAAAAAAAAAGGAAAGCAGGACTTTTTCATGAACACTAAAAGTGTATATTTTTCAGAATTTATGGTCATAAATGCGCTCGACAGCGAACGTACTGTAATACTACGGTAAATTAGCGTTGAGCTACGACGCGAAGGCTTCAAATTAAACGGCTATTCAGAGGTGCTTGAATTGGAAAAATAGCGGAAAAAGTACACAAAATGGGTTACTTTTCCAAATAATTTCAAAAGTTTCGGC</canonical>
            <polymorphic>GGCTTGGAGCGAAATATAATTTTCAAAAATTGCACCGTAATCTTTAAAGGTTCACAACAAAAAACTTGATTCGGTTTCGCAGCGAATCTAAATTTTTGTAATTTTTCACAAGAGTTTTCGAAAAAAAAAGCGAAAAATCTAACGAAAAAATGTCAAAAGTTTGCCTAAGAGACCGCCATAAAAATGAAACCTTTATAAATTGAGGGACATAAAATGAAAACCGGCGATAAAATAAGAGGCCCCGAATCATCATCAAATCATCAAAAACTCGTTTTGACAGATGCTCGTCGGCGCCGACTCCGAGTTCTTCCCTTCTCCCGTGTTACGGACCGGGGGAGCTCTTCCGATTGAAACATGTGCAGAAAGACAGAGAAGAAGACGACTAACAACAGATGTGTTGAGAAGCGGGGCAGCGTCAATATTGAAGGAATCGAAAAATATGAAAAAAAAGAAAAGAGAATGAAATTTAAAAAATCGACAAGATTTCATAGATTCCTTTKCTTCTTTTATGACAATTTTTGCTTTTGTACACCCCCGCTTTTGTATTTTTTTTCTGTAGAAAAATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCCGAAAGTGTTCTCAAAATATTTTCTGGGCGGTGAAAAAGAGCGCAAATCGAGAAAAAACGCTTGGCAGAAAAGAGCATATAAAAAAGAAGTATTTAATAGCTCTGCGTCCCATAAAAAGTCGTTATTCGTGCGAGATTAACTCGGAATTGGTTTCGATGGCAAAAAAAAAGGAAAGCAGGACTTTTTCATGAACACTAAAAGTGTATATTTTTCAGAATTTATGGTCATAAATGCGCTCGACAGCGAACGTACTGTAATACTACGGTAAATTAGCGTTGAGCTACGACGCGAAGGCTTCAAATTAAACGGCTATTCAGAGGTGCTTGAATTGGAAAAATAGCGGAAAAAGTACACAAAATGGGTTACTTTTCCAAATAATTTCAAAAGTTTCGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAGACAGAGAAGAAGACGAC</pcr_primer_p1>
		<pcr_primer_p2>GGGCTCTATTCAAAACAAACTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAAAGACAGAGAAGAAGACGACTAACAACAGATGTGTTGAGAAGCGGGGCAGCGTCAATATTGAAGGAATCGAAAAATATGAAAAAAAAGAAAAGAGAATGAAATTTAAAAAATCGACAAGATTTCATAGATTCCTTTGCTTCTTTTATGACAATTTTTGCTTTTGTACACCCCCGCTTTTGTATTTTTTTTCTGTAGAAAAATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCC</canonical_amplicon>
		<polymorphic_amplicon>AGAAAGACAGAGAAGAAGACGACTAACAACAGATGTGTTGAGAAGCGGGGCAGCGTCAATATTGAAGGAATCGAAAAATATGAAAAAAAAGAAAAGAGAATGAAATTTAAAAAATCGACAAGATTTCATAGATTCCTTTKCTTCTTTTATGACAATTTTTGCTTTTGTACACCCCCGCTTTTGTATTTTTTTTCTGTAGAAAAATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8282</snp_id>
        <super_contig>c004400954.Contig1</super_contig>
        <contig_pos>5709</contig_pos>
        <strand>+</strand>
        <context>GAATGAAATT[C/T]AAAAAWTCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATATTGAAGGAATCGAAAAATATGAAAAAAAAGAAAAGAGAATGAAATT</left_flank>
        <right_flank>AAAAAATCGACAAGATTTCATAGATTCCTTTGCTTCTTTTATGACAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCAGAAAAATCAAGGAAAACTGTCGAAAATGGGCTTGGAGCGAAATATAATTTTCAAAAATTGCACCGTAATCTTTAAAGGTTCACAACAAAAAACTTGATTCGGTTTCGCAGCGAATCTAAATTTTTGTAATTTTTCACAAGAGTTTTCGAAAAAAAAAGCGAAAAATCTAACGAAAAAATGTCAAAAGTTTGCCTAAGAGACCGCCATAAAAATGAAACCTTTATAAATTGAGGGACATAAAATGAAAACCGGCGATAAAATAAGAGGCCCCGAATCATCATCAAATCATCAAAAACTCGTTTTGACAGATGCTCGTCGGCGCCGACTCCGAGTTCTTCCCTTCTCCCGTGTTACGGACCGGGGGAGCTCTTCCGATTGAAACATGTGCAGAAAGACAGAGAAGAAGACGACTAACAACAGATGTGTTGAGAAGCGGGGCAGCGTCAATATTGAAGGAATCGAAAAATATGAAAAAAAAGAAAAGAGAATGAAATTTAAAAAATCGACAAGATTTCATAGATTCCTTTGCTTCTTTTATGACAATTTTTGCTTTTGTACACCCCCGCTTTTGTATTTTTTTTCTGTAGAAAAATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCCGAAAGTGTTCTCAAAATATTTTCTGGGCGGTGAAAAAGAGCGCAAATCGAGAAAAAACGCTTGGCAGAAAAGAGCATATAAAAAAGAAGTATTTAATAGCTCTGCGTCCCATAAAAAGTCGTTATTCGTGCGAGATTAACTCGGAATTGGTTTCGATGGCAAAAAAAAAGGAAAGCAGGACTTTTTCATGAACACTAAAAGTGTATATTTTTCAGAATTTATGGTCATAAATGCGCTCGACAGCGAACGTACTGTAATACTACGGTAAATTAGCGTTGAGCTACGACGCGAAGGCTTCAAATTAAACGGCTATTCAGAGGTGCTTGAATTGGAAAAATAGCGGAAAAAGTACACAAAATGGG</canonical>
            <polymorphic>CTCAGAAAAATCAAGGAAAACTGTCGAAAATGGGCTTGGAGCGAAATATAATTTTCAAAAATTGCACCGTAATCTTTAAAGGTTCACAACAAAAAACTTGATTCGGTTTCGCAGCGAATCTAAATTTTTGTAATTTTTCACAAGAGTTTTCGAAAAAAAAAGCGAAAAATCTAACGAAAAAATGTCAAAAGTTTGCCTAAGAGACCGCCATAAAAATGAAACCTTTATAAATTGAGGGACATAAAATGAAAACCGGCGATAAAATAAGAGGCCCCGAATCATCATCAAATCATCAAAAACTCGTTTTGACAGATGCTCGTCGGCGCCGACTCCGAGTTCTTCCCTTCTCCCGTGTTACGGACCGGGGGAGCTCTTCCGATTGAAACATGTGCAGAAAGACAGAGAAGAAGACGACTAACAACAGATGTGTTGAGAAGCGGGGCAGCGTCAATATTGAAGGAATCGAAAAATATGAAAAAAAAGAAAAGAGAATGAAATTYAAAAAATCGACAAGATTTCATAGATTCCTTTGCTTCTTTTATGACAATTTTTGCTTTTGTACACCCCCGCTTTTGTATTTTTTTTCTGTAGAAAAATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCCGAAAGTGTTCTCAAAATATTTTCTGGGCGGTGAAAAAGAGCGCAAATCGAGAAAAAACGCTTGGCAGAAAAGAGCATATAAAAAAGAAGTATTTAATAGCTCTGCGTCCCATAAAAAGTCGTTATTCGTGCGAGATTAACTCGGAATTGGTTTCGATGGCAAAAAAAAAGGAAAGCAGGACTTTTTCATGAACACTAAAAGTGTATATTTTTCAGAATTTATGGTCATAAATGCGCTCGACAGCGAACGTACTGTAATACTACGGTAAATTAGCGTTGAGCTACGACGCGAAGGCTTCAAATTAAACGGCTATTCAGAGGTGCTTGAATTGGAAAAATAGCGGAAAAAGTACACAAAATGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>373 251 147 122 107</canonical_bands>
                <polymorphic_bands>480 251 147 122</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 423 77</canonical_bands>
                <polymorphic_bands>923 77</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>423 232 166 76 60 43</canonical_bands>
                <polymorphic_bands>655 166 76 60 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAAGACAGAGAAGAAGACGAC</pcr_primer_p1>
		<pcr_primer_p2>GGGCTCTATTCAAAACAAACTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAAAGACAGAGAAGAAGACGACTAACAACAGATGTGTTGAGAAGCGGGGCAGCGTCAATATTGAAGGAATCGAAAAATATGAAAAAAAAGAAAAGAGAATGAAATTTAAAAAATCGACAAGATTTCATAGATTCCTTTGCTTCTTTTATGACAATTTTTGCTTTTGTACACCCCCGCTTTTGTATTTTTTTTCTGTAGAAAAATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCC</canonical_amplicon>
		<polymorphic_amplicon>AGAAAGACAGAGAAGAAGACGACTAACAACAGATGTGTTGAGAAGCGGGGCAGCGTCAATATTGAAGGAATCGAAAAATATGAAAAAAAAGAAAAGAGAATGAAATTYAAAAAATCGACAAGATTTCATAGATTCCTTTGCTTCTTTTATGACAATTTTTGCTTTTGTACACCCCCGCTTTTGTATTTTTTTTCTGTAGAAAAATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8283</snp_id>
        <super_contig>c004400954.Contig1</super_contig>
        <contig_pos>5678</contig_pos>
        <strand>+</strand>
        <context>GGAATCGAAA[A/T]ATATGAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAACAGATGTGTTGAGAAGCGGGGCAGCGTCAATATTGAAGGAATCGAAA</left_flank>
        <right_flank>ATATGAAAAAAAAGAAAAGAGAATGAAATTTAAAAAATCGACAAGATTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGGTATTTAAGTAATTTTCTCTAACAATGACTCAGAAAAATCAAGGAAAACTGTCGAAAATGGGCTTGGAGCGAAATATAATTTTCAAAAATTGCACCGTAATCTTTAAAGGTTCACAACAAAAAACTTGATTCGGTTTCGCAGCGAATCTAAATTTTTGTAATTTTTCACAAGAGTTTTCGAAAAAAAAAGCGAAAAATCTAACGAAAAAATGTCAAAAGTTTGCCTAAGAGACCGCCATAAAAATGAAACCTTTATAAATTGAGGGACATAAAATGAAAACCGGCGATAAAATAAGAGGCCCCGAATCATCATCAAATCATCAAAAACTCGTTTTGACAGATGCTCGTCGGCGCCGACTCCGAGTTCTTCCCTTCTCCCGTGTTACGGACCGGGGGAGCTCTTCCGATTGAAACATGTGCAGAAAGACAGAGAAGAAGACGACTAACAACAGATGTGTTGAGAAGCGGGGCAGCGTCAATATTGAAGGAATCGAAAAATATGAAAAAAAAGAAAAGAGAATGAAATTTAAAAAATCGACAAGATTTCATAGATTCCTTTGCTTCTTTTATGACAATTTTTGCTTTTGTACACCCCCGCTTTTGTATTTTTTTTCTGTAGAAAAATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCCGAAAGTGTTCTCAAAATATTTTCTGGGCGGTGAAAAAGAGCGCAAATCGAGAAAAAACGCTTGGCAGAAAAGAGCATATAAAAAAGAAGTATTTAATAGCTCTGCGTCCCATAAAAAGTCGTTATTCGTGCGAGATTAACTCGGAATTGGTTTCGATGGCAAAAAAAAAGGAAAGCAGGACTTTTTCATGAACACTAAAAGTGTATATTTTTCAGAATTTATGGTCATAAATGCGCTCGACAGCGAACGTACTGTAATACTACGGTAAATTAGCGTTGAGCTACGACGCGAAGGCTTCAAATTAAACGGCTATTCAGAGGTGCTTGAATTG</canonical>
            <polymorphic>CAGGTATTTAAGTAATTTTCTCTAACAATGACTCAGAAAAATCAAGGAAAACTGTCGAAAATGGGCTTGGAGCGAAATATAATTTTCAAAAATTGCACCGTAATCTTTAAAGGTTCACAACAAAAAACTTGATTCGGTTTCGCAGCGAATCTAAATTTTTGTAATTTTTCACAAGAGTTTTCGAAAAAAAAAGCGAAAAATCTAACGAAAAAATGTCAAAAGTTTGCCTAAGAGACCGCCATAAAAATGAAACCTTTATAAATTGAGGGACATAAAATGAAAACCGGCGATAAAATAAGAGGCCCCGAATCATCATCAAATCATCAAAAACTCGTTTTGACAGATGCTCGTCGGCGCCGACTCCGAGTTCTTCCCTTCTCCCGTGTTACGGACCGGGGGAGCTCTTCCGATTGAAACATGTGCAGAAAGACAGAGAAGAAGACGACTAACAACAGATGTGTTGAGAAGCGGGGCAGCGTCAATATTGAAGGAATCGAAAWATATGAAAAAAAAGAAAAGAGAATGAAATTTAAAAAATCGACAAGATTTCATAGATTCCTTTGCTTCTTTTATGACAATTTTTGCTTTTGTACACCCCCGCTTTTGTATTTTTTTTCTGTAGAAAAATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCCGAAAGTGTTCTCAAAATATTTTCTGGGCGGTGAAAAAGAGCGCAAATCGAGAAAAAACGCTTGGCAGAAAAGAGCATATAAAAAAGAAGTATTTAATAGCTCTGCGTCCCATAAAAAGTCGTTATTCGTGCGAGATTAACTCGGAATTGGTTTCGATGGCAAAAAAAAAGGAAAGCAGGACTTTTTCATGAACACTAAAAGTGTATATTTTTCAGAATTTATGGTCATAAATGCGCTCGACAGCGAACGTACTGTAATACTACGGTAAATTAGCGTTGAGCTACGACGCGAAGGCTTCAAATTAAACGGCTATTCAGAGGTGCTTGAATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAGACAGAGAAGAAGACGAC</pcr_primer_p1>
		<pcr_primer_p2>GGGCTCTATTCAAAACAAACTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAAAGACAGAGAAGAAGACGACTAACAACAGATGTGTTGAGAAGCGGGGCAGCGTCAATATTGAAGGAATCGAAAAATATGAAAAAAAAGAAAAGAGAATGAAATTTAAAAAATCGACAAGATTTCATAGATTCCTTTGCTTCTTTTATGACAATTTTTGCTTTTGTACACCCCCGCTTTTGTATTTTTTTTCTGTAGAAAAATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCC</canonical_amplicon>
		<polymorphic_amplicon>AGAAAGACAGAGAAGAAGACGACTAACAACAGATGTGTTGAGAAGCGGGGCAGCGTCAATATTGAAGGAATCGAAAWATATGAAAAAAAAGAAAAGAGAATGAAATTTAAAAAATCGACAAGATTTCATAGATTCCTTTGCTTCTTTTATGACAATTTTTGCTTTTGTACACCCCCGCTTTTGTATTTTTTTTCTGTAGAAAAATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8284</snp_id>
        <super_contig>c004400954.Contig1</super_contig>
        <contig_pos>5459</contig_pos>
        <strand>+</strand>
        <context>CATAAAATGA[A/G]AACCGGCGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAGACCGCCATAAAAATGAAACCTTTATAAATTGAGGGACATAAAATGA</left_flank>
        <right_flank>AACCGGCGATAAAATAAGAGGCCCCGAATCATCATCAAATCATCAAAAAC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCCATAAATAACCTAGAAAATACAATGAAAACTGGCGAAAACAGAGAAATTTCAAATAAAACAGCAACATTTCAAAAACTACCGTACTCCTTAAAGGCGCATCCAACAATATTGTCTAACGGGTTTCACCACGAAAATCTTATTTTACAGTTTTTTTTACGAATTTTATAGTTTTTGATTACAATTGATCAGTTTTTAGGGTAAATAAAAATTTTTACAGGTATTTAAGTAATTTTCTCTAACAATGACTCAGAAAAATCAAGGAAAACTGTCGAAAATGGGCTTGGAGCGAAATATAATTTTCAAAAATTGCACCGTAATCTTTAAAGGTTCACAACAAAAAACTTGATTCGGTTTCGCAGCGAATCTAAATTTTTGTAATTTTTCACAAGAGTTTTCGAAAAAAAAAGCGAAAAATCTAACGAAAAAATGTCAAAAGTTTGCCTAAGAGACCGCCATAAAAATGAAACCTTTATAAATTGAGGGACATAAAATGAAAACCGGCGATAAAATAAGAGGCCCCGAATCATCATCAAATCATCAAAAACTCGTTTTGACAGATGCTCGTCGGCGCCGACTCCGAGTTCTTCCCTTCTCCCGTGTTACGGACCGGGGGAGCTCTTCCGATTGAAACATGTGCAGAAAGACAGAGAAGAAGACGACTAACAACAGATGTGTTGAGAAGCGGGGCAGCGTCAATATTGAAGGAATCGAAAAATATGAAAAAAAAGAAAAGAGAATGAAATTTAAAAAATCGACAAGATTTCATAGATTCCTTTGCTTCTTTTATGACAATTTTTGCTTTTGTACACCCCCGCTTTTGTATTTTTTTTCTGTAGAAAAATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCCGAAAGTGTTCTCAAAATATTTTCTGGGCGGTGAAAAAGAGCGCAAATCGAGAAAAAACGCTTGGCAGAAAAGAGCATATAAAAAAGAAGTATTTAATAGCTCTGCGTCCCAT</canonical>
            <polymorphic>TCTCCATAAATAACCTAGAAAATACAATGAAAACTGGCGAAAACAGAGAAATTTCAAATAAAACAGCAACATTTCAAAAACTACCGTACTCCTTAAAGGCGCATCCAACAATATTGTCTAACGGGTTTCACCACGAAAATCTTATTTTACAGTTTTTTTTACGAATTTTATAGTTTTTGATTACAATTGATCAGTTTTTAGGGTAAATAAAAATTTTTACAGGTATTTAAGTAATTTTCTCTAACAATGACTCAGAAAAATCAAGGAAAACTGTCGAAAATGGGCTTGGAGCGAAATATAATTTTCAAAAATTGCACCGTAATCTTTAAAGGTTCACAACAAAAAACTTGATTCGGTTTCGCAGCGAATCTAAATTTTTGTAATTTTTCACAAGAGTTTTCGAAAAAAAAAGCGAAAAATCTAACGAAAAAATGTCAAAAGTTTGCCTAAGAGACCGCCATAAAAATGAAACCTTTATAAATTGAGGGACATAAAATGARAACCGGCGATAAAATAAGAGGCCCCGAATCATCATCAAATCATCAAAAACTCGTTTTGACAGATGCTCGTCGGCGCCGACTCCGAGTTCTTCCCTTCTCCCGTGTTACGGACCGGGGGAGCTCTTCCGATTGAAACATGTGCAGAAAGACAGAGAAGAAGACGACTAACAACAGATGTGTTGAGAAGCGGGGCAGCGTCAATATTGAAGGAATCGAAAAATATGAAAAAAAAGAAAAGAGAATGAAATTTAAAAAATCGACAAGATTTCATAGATTCCTTTGCTTCTTTTATGACAATTTTTGCTTTTGTACACCCCCGCTTTTGTATTTTTTTTCTGTAGAAAAATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCCGAAAGTGTTCTCAAAATATTTTCTGGGCGGTGAAAAAGAGCGCAAATCGAGAAAAAACGCTTGGCAGAAAAGAGCATATAAAAAAGAAGTATTTAATAGCTCTGCGTCCCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAATTGCACCGTAATCT</pcr_primer_p1>
		<pcr_primer_p2>AACGAGTTTTTGATGATTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATTGCACCGTAATCTTTAAAGGTTCACAACAAAAAACTTGATTCGGTTTCGCAGCGAATCTAAATTTTTGTAATTTTTCACAAGAGTTTTCGAAAAAAAAAGCGAAAAATCTAACGAAAAAATGTCAAAAGTTTGCCTAAGAGACCGCCATAAAAATGAAACCTTTATAAATTGAGGGACATAAAATGAAAACCGGCGATAAAATAAGAGGCCCCGAATCATCATCAAATCATCAAAAACTCGTT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAATTGCACCGTAATCTTTAAAGGTTCACAACAAAAAACTTGATTCGGTTTCGCAGCGAATCTAAATTTTTGTAATTTTTCACAAGAGTTTTCGAAAAAAAAAGCGAAAAATCTAACGAAAAAATGTCAAAAGTTTGCCTAAGAGACCGCCATAAAAATGAAACCTTTATAAATTGAGGGACATAAAATGARAACCGGCGATAAAATAAGAGGCCCCGAATCATCATCAAATCATCAAAAACTCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8285</snp_id>
        <super_contig>c004400954.Contig1</super_contig>
        <contig_pos>5355</contig_pos>
        <strand>+</strand>
        <context>TTTCACAAGA[G/T]TTTTCGAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTTGATTCGGTTTCGCAGCGAATCTAAATTTTTGTAATTTTTCACAAGA</left_flank>
        <right_flank>TTTTCGAAAAAAAAAGCGAAAAATCTAACGAAAAAATGTCAAAAGTTTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATACTATTTTATACATTTTCAAAAGAATTTTTTTGCTCTCGACTGCTATAAACTAATTTTTGTAGAAAAAAAAAGACATTTTCACATATATTTAAGCAATTTTCTCCATAAATAACCTAGAAAATACAATGAAAACTGGCGAAAACAGAGAAATTTCAAATAAAACAGCAACATTTCAAAAACTACCGTACTCCTTAAAGGCGCATCCAACAATATTGTCTAACGGGTTTCACCACGAAAATCTTATTTTACAGTTTTTTTTACGAATTTTATAGTTTTTGATTACAATTGATCAGTTTTTAGGGTAAATAAAAATTTTTACAGGTATTTAAGTAATTTTCTCTAACAATGACTCAGAAAAATCAAGGAAAACTGTCGAAAATGGGCTTGGAGCGAAATATAATTTTCAAAAATTGCACCGTAATCTTTAAAGGTTCACAACAAAAAACTTGATTCGGTTTCGCAGCGAATCTAAATTTTTGTAATTTTTCACAAGAGTTTTCGAAAAAAAAAGCGAAAAATCTAACGAAAAAATGTCAAAAGTTTGCCTAAGAGACCGCCATAAAAATGAAACCTTTATAAATTGAGGGACATAAAATGAAAACCGGCGATAAAATAAGAGGCCCCGAATCATCATCAAATCATCAAAAACTCGTTTTGACAGATGCTCGTCGGCGCCGACTCCGAGTTCTTCCCTTCTCCCGTGTTACGGACCGGGGGAGCTCTTCCGATTGAAACATGTGCAGAAAGACAGAGAAGAAGACGACTAACAACAGATGTGTTGAGAAGCGGGGCAGCGTCAATATTGAAGGAATCGAAAAATATGAAAAAAAAGAAAAGAGAATGAAATTTAAAAAATCGACAAGATTTCATAGATTCCTTTGCTTCTTTTATGACAATTTTTGCTTTTGTACACCCCCGCTTTTGTATTTTTTTTCTGTAGAAAAATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCCGAAAGTGT</canonical>
            <polymorphic>AAATACTATTTTATACATTTTCAAAAGAATTTTTTTGCTCTCGACTGCTATAAACTAATTTTTGTAGAAAAAAAAAGACATTTTCACATATATTTAAGCAATTTTCTCCATAAATAACCTAGAAAATACAATGAAAACTGGCGAAAACAGAGAAATTTCAAATAAAACAGCAACATTTCAAAAACTACCGTACTCCTTAAAGGCGCATCCAACAATATTGTCTAACGGGTTTCACCACGAAAATCTTATTTTACAGTTTTTTTTACGAATTTTATAGTTTTTGATTACAATTGATCAGTTTTTAGGGTAAATAAAAATTTTTACAGGTATTTAAGTAATTTTCTCTAACAATGACTCAGAAAAATCAAGGAAAACTGTCGAAAATGGGCTTGGAGCGAAATATAATTTTCAAAAATTGCACCGTAATCTTTAAAGGTTCACAACAAAAAACTTGATTCGGTTTCGCAGCGAATCTAAATTTTTGTAATTTTTCACAAGAKTTTTCGAAAAAAAAAGCGAAAAATCTAACGAAAAAATGTCAAAAGTTTGCCTAAGAGACCGCCATAAAAATGAAACCTTTATAAATTGAGGGACATAAAATGAAAACCGGCGATAAAATAAGAGGCCCCGAATCATCATCAAATCATCAAAAACTCGTTTTGACAGATGCTCGTCGGCGCCGACTCCGAGTTCTTCCCTTCTCCCGTGTTACGGACCGGGGGAGCTCTTCCGATTGAAACATGTGCAGAAAGACAGAGAAGAAGACGACTAACAACAGATGTGTTGAGAAGCGGGGCAGCGTCAATATTGAAGGAATCGAAAAATATGAAAAAAAAGAAAAGAGAATGAAATTTAAAAAATCGACAAGATTTCATAGATTCCTTTGCTTCTTTTATGACAATTTTTGCTTTTGTACACCCCCGCTTTTGTATTTTTTTTCTGTAGAAAAATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCCGAAAGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAATGACTCAGAAAAATCAAG</pcr_primer_p1>
		<pcr_primer_p2>ATGTCCCTCAATTTATAAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACAATGACTCAGAAAAATCAAGGAAAACTGTCGAAAATGGGCTTGGAGCGAAATATAATTTTCAAAAATTGCACCGTAATCTTTAAAGGTTCACAACAAAAAACTTGATTCGGTTTCGCAGCGAATCTAAATTTTTGTAATTTTTCACAAGAGTTTTCGAAAAAAAAAGCGAAAAATCTAACGAAAAAATGTCAAAAGTTTGCCTAAGAGACCGCCATAAAAATGAAACCTTTATAAATTGAGGGACAT</canonical_amplicon>
		<polymorphic_amplicon>AACAATGACTCAGAAAAATCAAGGAAAACTGTCGAAAATGGGCTTGGAGCGAAATATAATTTTCAAAAATTGCACCGTAATCTTTAAAGGTTCACAACAAAAAACTTGATTCGGTTTCGCAGCGAATCTAAATTTTTGTAATTTTTCACAAGAKTTTTCGAAAAAAAAAGCGAAAAATCTAACGAAAAAATGTCAAAAGTTTGCCTAAGAGACCGCCATAAAAATGAAACCTTTATAAATTGAGGGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8286</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>10394</contig_pos>
        <strand></strand>
        <context>tttttgtaag[A/G]gtagattayt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAG</left_flank>
        <right_flank>GTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCTGACATGACTTCTATATTTTTGTGCTTTCCATGTTTCCAATTTTATTTTAGCTTAATTTTCAACATTAATTGACCAATTTTCATCGCGGAAACAAATTTTCAAGGACTCCACAGAGCACAGTAGTTTATCTGCTTTACATTAGCCTTTGATTTTCCTGAAATAGAGACTTCAAAGGAGTTGAAGCTCTATCTTCAAAACAAGCTTACCGATAGATATCAAAATGATTTTTCCACTTTTCAAAATATTTTCCATCCGTACAATTCACCATTAGTTTCGAAATATTTCATGAAGCGTCTGAATTTCAAACTACATTCAAAAAGTTTCGACAGCTTTTGGAGACGCAGACATTTCGAAAAGGTTTTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATAGGGTGGAAAATTTTTTGATGAAAAAAATTCAAAAAAACTTTCAAGTAAAAAAAACCGAAGAAAAGAACTGATTCAAGGAATCACTTGTAAACATTAGTTGAAAAAAAATAGTGCATCAAAAACCAAGTCTTGTGCCATTTGTCCTTCACGGAGAAGAGAAATAAACGATTGTGAAACTTGACAAAATATGTCGGCCGCTTGAAACGTGCGTAGTATATAAACACCATCTGTTTTCACATTGTTGTCGGTCCGGAGTCGATGGATTATCCGACAAACCGCCCCTTTG</canonical>
            <polymorphic>ATTTCTGACATGACTTCTATATTTTTGTGCTTTCCATGTTTCCAATTTTATTTTAGCTTAATTTTCAACATTAATTGACCAATTTTCATCGCGGAAACAAATTTTCAAGGACTCCACAGAGCACAGTAGTTTATCTGCTTTACATTAGCCTTTGATTTTCCTGAAATAGAGACTTCAAAGGAGTTGAAGCTCTATCTTCAAAACAAGCTTACCGATAGATATCAAAATGATTTTTCCACTTTTCAAAATATTTTCCATCCGTACAATTCACCATTAGTTTCGAAATATTTCATGAAGCGTCTGAATTTCAAACTACATTCAAAAAGTTTCGACAGCTTTTGGAGACGCAGACATTTCGAAAAGGTTTTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGRGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATAGGGTGGAAAATTTTTTGATGAAAAAAATTCAAAAAAACTTTCAAGTAAAAAAAACCGAAGAAAAGAACTGATTCAAGGAATCACTTGTAAACATTAGTTGAAAAAAAATAGTGCATCAAAAACCAAGTCTTGTGCCATTTGTCCTTCACGGAGAAGAGAAATAAACGATTGTGAAACTTGACAAAATATGTCGGCCGCTTGAAACGTGCGTAGTATATAAACACCATCTGTTTTCACATTGTTGTCGGTCCGGAGTCGATGGATTATCCGACAAACCGCCCCTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTTACGAAATGATTATGA</pcr_primer_p1>
		<pcr_primer_p2>TATTCTTTGAACCCGATTGTT</pcr_primer_p2>
		<pcr_amplicon_size>348</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGRGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8287</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>10403</contig_pos>
        <strand></strand>
        <context>grgtagatta[C/T]tccaggattt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTA</left_flank>
        <right_flank>TCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGACTTCTATATTTTTGTGCTTTCCATGTTTCCAATTTTATTTTAGCTTAATTTTCAACATTAATTGACCAATTTTCATCGCGGAAACAAATTTTCAAGGACTCCACAGAGCACAGTAGTTTATCTGCTTTACATTAGCCTTTGATTTTCCTGAAATAGAGACTTCAAAGGAGTTGAAGCTCTATCTTCAAAACAAGCTTACCGATAGATATCAAAATGATTTTTCCACTTTTCAAAATATTTTCCATCCGTACAATTCACCATTAGTTTCGAAATATTTCATGAAGCGTCTGAATTTCAAACTACATTCAAAAAGTTTCGACAGCTTTTGGAGACGCAGACATTTCGAAAAGGTTTTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATAGGGTGGAAAATTTTTTGATGAAAAAAATTCAAAAAAACTTTCAAGTAAAAAAAACCGAAGAAAAGAACTGATTCAAGGAATCACTTGTAAACATTAGTTGAAAAAAAATAGTGCATCAAAAACCAAGTCTTGTGCCATTTGTCCTTCACGGAGAAGAGAAATAAACGATTGTGAAACTTGACAAAATATGTCGGCCGCTTGAAACGTGCGTAGTATATAAACACCATCTGTTTTCACATTGTTGTCGGTCCGGAGTCGATGGATTATCCGACAAACCGCCCCTTTGATCCCATCG</canonical>
            <polymorphic>ATGACTTCTATATTTTTGTGCTTTCCATGTTTCCAATTTTATTTTAGCTTAATTTTCAACATTAATTGACCAATTTTCATCGCGGAAACAAATTTTCAAGGACTCCACAGAGCACAGTAGTTTATCTGCTTTACATTAGCCTTTGATTTTCCTGAAATAGAGACTTCAAAGGAGTTGAAGCTCTATCTTCAAAACAAGCTTACCGATAGATATCAAAATGATTTTTCCACTTTTCAAAATATTTTCCATCCGTACAATTCACCATTAGTTTCGAAATATTTCATGAAGCGTCTGAATTTCAAACTACATTCAAAAAGTTTCGACAGCTTTTGGAGACGCAGACATTTCGAAAAGGTTTTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTAYTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATAGGGTGGAAAATTTTTTGATGAAAAAAATTCAAAAAAACTTTCAAGTAAAAAAAACCGAAGAAAAGAACTGATTCAAGGAATCACTTGTAAACATTAGTTGAAAAAAAATAGTGCATCAAAAACCAAGTCTTGTGCCATTTGTCCTTCACGGAGAAGAGAAATAAACGATTGTGAAACTTGACAAAATATGTCGGCCGCTTGAAACGTGCGTAGTATATAAACACCATCTGTTTTCACATTGTTGTCGGTCCGGAGTCGATGGATTATCCGACAAACCGCCCCTTTGATCCCATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTTACGAAATGATTATGA</pcr_primer_p1>
		<pcr_primer_p2>TATTCTTTGAACCCGATTGTT</pcr_primer_p2>
		<pcr_amplicon_size>348</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTAYTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8288</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>10445</contig_pos>
        <strand></strand>
        <context>atcattttct[T/C]tmaaaaaatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCT</left_flank>
        <right_flank>TAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAGCTTAATTTTCAACATTAATTGACCAATTTTCATCGCGGAAACAAATTTTCAAGGACTCCACAGAGCACAGTAGTTTATCTGCTTTACATTAGCCTTTGATTTTCCTGAAATAGAGACTTCAAAGGAGTTGAAGCTCTATCTTCAAAACAAGCTTACCGATAGATATCAAAATGATTTTTCCACTTTTCAAAATATTTTCCATCCGTACAATTCACCATTAGTTTCGAAATATTTCATGAAGCGTCTGAATTTCAAACTACATTCAAAAAGTTTCGACAGCTTTTGGAGACGCAGACATTTCGAAAAGGTTTTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATAGGGTGGAAAATTTTTTGATGAAAAAAATTCAAAAAAACTTTCAAGTAAAAAAAACCGAAGAAAAGAACTGATTCAAGGAATCACTTGTAAACATTAGTTGAAAAAAAATAGTGCATCAAAAACCAAGTCTTGTGCCATTTGTCCTTCACGGAGAAGAGAAATAAACGATTGTGAAACTTGACAAAATATGTCGGCCGCTTGAAACGTGCGTAGTATATAAACACCATCTGTTTTCACATTGTTGTCGGTCCGGAGTCGATGGATTATCCGACAAACCGCCCCTTTGATCCCATCGACATCCCAAATTGACCGTCATTTTTATGGGATTGAAACATGT</canonical>
            <polymorphic>TTTAGCTTAATTTTCAACATTAATTGACCAATTTTCATCGCGGAAACAAATTTTCAAGGACTCCACAGAGCACAGTAGTTTATCTGCTTTACATTAGCCTTTGATTTTCCTGAAATAGAGACTTCAAAGGAGTTGAAGCTCTATCTTCAAAACAAGCTTACCGATAGATATCAAAATGATTTTTCCACTTTTCAAAATATTTTCCATCCGTACAATTCACCATTAGTTTCGAAATATTTCATGAAGCGTCTGAATTTCAAACTACATTCAAAAAGTTTCGACAGCTTTTGGAGACGCAGACATTTCGAAAAGGTTTTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTYTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATAGGGTGGAAAATTTTTTGATGAAAAAAATTCAAAAAAACTTTCAAGTAAAAAAAACCGAAGAAAAGAACTGATTCAAGGAATCACTTGTAAACATTAGTTGAAAAAAAATAGTGCATCAAAAACCAAGTCTTGTGCCATTTGTCCTTCACGGAGAAGAGAAATAAACGATTGTGAAACTTGACAAAATATGTCGGCCGCTTGAAACGTGCGTAGTATATAAACACCATCTGTTTTCACATTGTTGTCGGTCCGGAGTCGATGGATTATCCGACAAACCGCCCCTTTGATCCCATCGACATCCCAAATTGACCGTCATTTTTATGGGATTGAAACATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 488 11</canonical_bands>
                <polymorphic_bands>512 488</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>489 387 69 24 13 11 7</canonical_bands>
                <polymorphic_bands>489 387 69 35 13 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTTACGAAATGATTATGA</pcr_primer_p1>
		<pcr_primer_p2>TATTCTTTGAACCCGATTGTT</pcr_primer_p2>
		<pcr_amplicon_size>348</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTYTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8289</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>10447</contig_pos>
        <strand></strand>
        <context>cattttctyt[A/C]aaaaaatttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTT</left_flank>
        <right_flank>AAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGCTTAATTTTCAACATTAATTGACCAATTTTCATCGCGGAAACAAATTTTCAAGGACTCCACAGAGCACAGTAGTTTATCTGCTTTACATTAGCCTTTGATTTTCCTGAAATAGAGACTTCAAAGGAGTTGAAGCTCTATCTTCAAAACAAGCTTACCGATAGATATCAAAATGATTTTTCCACTTTTCAAAATATTTTCCATCCGTACAATTCACCATTAGTTTCGAAATATTTCATGAAGCGTCTGAATTTCAAACTACATTCAAAAAGTTTCGACAGCTTTTGGAGACGCAGACATTTCGAAAAGGTTTTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATAGGGTGGAAAATTTTTTGATGAAAAAAATTCAAAAAAACTTTCAAGTAAAAAAAACCGAAGAAAAGAACTGATTCAAGGAATCACTTGTAAACATTAGTTGAAAAAAAATAGTGCATCAAAAACCAAGTCTTGTGCCATTTGTCCTTCACGGAGAAGAGAAATAAACGATTGTGAAACTTGACAAAATATGTCGGCCGCTTGAAACGTGCGTAGTATATAAACACCATCTGTTTTCACATTGTTGTCGGTCCGGAGTCGATGGATTATCCGACAAACCGCCCCTTTGATCCCATCGACATCCCAAATTGACCGTCATTTTTATGGGATTGAAACATGTGA</canonical>
            <polymorphic>TAGCTTAATTTTCAACATTAATTGACCAATTTTCATCGCGGAAACAAATTTTCAAGGACTCCACAGAGCACAGTAGTTTATCTGCTTTACATTAGCCTTTGATTTTCCTGAAATAGAGACTTCAAAGGAGTTGAAGCTCTATCTTCAAAACAAGCTTACCGATAGATATCAAAATGATTTTTCCACTTTTCAAAATATTTTCCATCCGTACAATTCACCATTAGTTTCGAAATATTTCATGAAGCGTCTGAATTTCAAACTACATTCAAAAAGTTTCGACAGCTTTTGGAGACGCAGACATTTCGAAAAGGTTTTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTMAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATAGGGTGGAAAATTTTTTGATGAAAAAAATTCAAAAAAACTTTCAAGTAAAAAAAACCGAAGAAAAGAACTGATTCAAGGAATCACTTGTAAACATTAGTTGAAAAAAAATAGTGCATCAAAAACCAAGTCTTGTGCCATTTGTCCTTCACGGAGAAGAGAAATAAACGATTGTGAAACTTGACAAAATATGTCGGCCGCTTGAAACGTGCGTAGTATATAAACACCATCTGTTTTCACATTGTTGTCGGTCCGGAGTCGATGGATTATCCGACAAACCGCCCCTTTGATCCCATCGACATCCCAAATTGACCGTCATTTTTATGGGATTGAAACATGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 490 11</canonical_bands>
                <polymorphic_bands>510 490</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>491 387 69 24 13 11 5</canonical_bands>
                <polymorphic_bands>491 387 69 35 13 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTTACGAAATGATTATGA</pcr_primer_p1>
		<pcr_primer_p2>TATTCTTTGAACCCGATTGTT</pcr_primer_p2>
		<pcr_amplicon_size>348</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTMAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8290</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>10459</contig_pos>
        <strand></strand>
        <context>aaaaatttta[A/C]aaatcaggta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTA</left_flank>
        <right_flank>AAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACATTAATTGACCAATTTTCATCGCGGAAACAAATTTTCAAGGACTCCACAGAGCACAGTAGTTTATCTGCTTTACATTAGCCTTTGATTTTCCTGAAATAGAGACTTCAAAGGAGTTGAAGCTCTATCTTCAAAACAAGCTTACCGATAGATATCAAAATGATTTTTCCACTTTTCAAAATATTTTCCATCCGTACAATTCACCATTAGTTTCGAAATATTTCATGAAGCGTCTGAATTTCAAACTACATTCAAAAAGTTTCGACAGCTTTTGGAGACGCAGACATTTCGAAAAGGTTTTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATAGGGTGGAAAATTTTTTGATGAAAAAAATTCAAAAAAACTTTCAAGTAAAAAAAACCGAAGAAAAGAACTGATTCAAGGAATCACTTGTAAACATTAGTTGAAAAAAAATAGTGCATCAAAAACCAAGTCTTGTGCCATTTGTCCTTCACGGAGAAGAGAAATAAACGATTGTGAAACTTGACAAAATATGTCGGCCGCTTGAAACGTGCGTAGTATATAAACACCATCTGTTTTCACATTGTTGTCGGTCCGGAGTCGATGGATTATCCGACAAACCGCCCCTTTGATCCCATCGACATCCCAAATTGACCGTCATTTTTATGGGATTGAAACATGTGAATCTTACATTTC</canonical>
            <polymorphic>CAACATTAATTGACCAATTTTCATCGCGGAAACAAATTTTCAAGGACTCCACAGAGCACAGTAGTTTATCTGCTTTACATTAGCCTTTGATTTTCCTGAAATAGAGACTTCAAAGGAGTTGAAGCTCTATCTTCAAAACAAGCTTACCGATAGATATCAAAATGATTTTTCCACTTTTCAAAATATTTTCCATCCGTACAATTCACCATTAGTTTCGAAATATTTCATGAAGCGTCTGAATTTCAAACTACATTCAAAAAGTTTCGACAGCTTTTGGAGACGCAGACATTTCGAAAAGGTTTTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAMAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATAGGGTGGAAAATTTTTTGATGAAAAAAATTCAAAAAAACTTTCAAGTAAAAAAAACCGAAGAAAAGAACTGATTCAAGGAATCACTTGTAAACATTAGTTGAAAAAAAATAGTGCATCAAAAACCAAGTCTTGTGCCATTTGTCCTTCACGGAGAAGAGAAATAAACGATTGTGAAACTTGACAAAATATGTCGGCCGCTTGAAACGTGCGTAGTATATAAACACCATCTGTTTTCACATTGTTGTCGGTCCGGAGTCGATGGATTATCCGACAAACCGCCCCTTTGATCCCATCGACATCCCAAATTGACCGTCATTTTTATGGGATTGAAACATGTGAATCTTACATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 487 11</canonical_bands>
                <polymorphic_bands>513 487</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>503 387 69 24 11 6</canonical_bands>
                <polymorphic_bands>514 387 69 24 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTTACGAAATGATTATGA</pcr_primer_p1>
		<pcr_primer_p2>TATTCTTTGAACCCGATTGTT</pcr_primer_p2>
		<pcr_amplicon_size>348</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAMAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8291</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>10488</contig_pos>
        <strand></strand>
        <context>gaccgggccg[G/A]gcgggccgga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCG</left_flank>
        <right_flank>GCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCAC</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACAAATTTTCAAGGACTCCACAGAGCACAGTAGTTTATCTGCTTTACATTAGCCTTTGATTTTCCTGAAATAGAGACTTCAAAGGAGTTGAAGCTCTATCTTCAAAACAAGCTTACCGATAGATATCAAAATGATTTTTCCACTTTTCAAAATATTTTCCATCCGTACAATTCACCATTAGTTTCGAAATATTTCATGAAGCGTCTGAATTTCAAACTACATTCAAAAAGTTTCGACAGCTTTTGGAGACGCAGACATTTCGAAAAGGTTTTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATAGGGTGGAAAATTTTTTGATGAAAAAAATTCAAAAAAACTTTCAAGTAAAAAAAACCGAAGAAAAGAACTGATTCAAGGAATCACTTGTAAACATTAGTTGAAAAAAAATAGTGCATCAAAAACCAAGTCTTGTGCCATTTGTCCTTCACGGAGAAGAGAAATAAACGATTGTGAAACTTGACAAAATATGTCGGCCGCTTGAAACGTGCGTAGTATATAAACACCATCTGTTTTCACATTGTTGTCGGTCCGGAGTCGATGGATTATCCGACAAACCGCCCCTTTGATCCCATCGACATCCCAAATTGACCGTCATTTTTATGGGATTGAAACATGTGAATCTTACATTTCCGGGGTTTAAAGAAATATAACAGAAGAAA</canonical>
            <polymorphic>AAACAAATTTTCAAGGACTCCACAGAGCACAGTAGTTTATCTGCTTTACATTAGCCTTTGATTTTCCTGAAATAGAGACTTCAAAGGAGTTGAAGCTCTATCTTCAAAACAAGCTTACCGATAGATATCAAAATGATTTTTCCACTTTTCAAAATATTTTCCATCCGTACAATTCACCATTAGTTTCGAAATATTTCATGAAGCGTCTGAATTTCAAACTACATTCAAAAAGTTTCGACAGCTTTTGGAGACGCAGACATTTCGAAAAGGTTTTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGRGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATAGGGTGGAAAATTTTTTGATGAAAAAAATTCAAAAAAACTTTCAAGTAAAAAAAACCGAAGAAAAGAACTGATTCAAGGAATCACTTGTAAACATTAGTTGAAAAAAAATAGTGCATCAAAAACCAAGTCTTGTGCCATTTGTCCTTCACGGAGAAGAGAAATAAACGATTGTGAAACTTGACAAAATATGTCGGCCGCTTGAAACGTGCGTAGTATATAAACACCATCTGTTTTCACATTGTTGTCGGTCCGGAGTCGATGGATTATCCGACAAACCGCCCCTTTGATCCCATCGACATCCCAAATTGACCGTCATTTTTATGGGATTGAAACATGTGAATCTTACATTTCCGGGGTTTAAAGAAATATAACAGAAGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>500 315 104 81</canonical_bands>
                <polymorphic_bands>815 104 81</polymorphic_bands>
            </assay>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>483 430 34 28 10 5 5 5</canonical_bands>
                <polymorphic_bands>483 430 39 28 10 5 5</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>430 305 113 65 34 28 10 5 5 5</canonical_bands>
                <polymorphic_bands>430 305 113 65 39 28 10 5 5</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>483 328 101 29 26 9 9 5 5 5</canonical_bands>
                <polymorphic_bands>483 328 101 29 26 14 9 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTTACGAAATGATTATGA</pcr_primer_p1>
		<pcr_primer_p2>TATTCTTTGAACCCGATTGTT</pcr_primer_p2>
		<pcr_amplicon_size>348</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGRGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8292</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>10513</contig_pos>
        <strand></strand>
        <context>tttttttcga[T/C]ycggycccgg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGA</left_flank>
        <right_flank>TCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCACAGTAGTTTATCTGCTTTACATTAGCCTTTGATTTTCCTGAAATAGAGACTTCAAAGGAGTTGAAGCTCTATCTTCAAAACAAGCTTACCGATAGATATCAAAATGATTTTTCCACTTTTCAAAATATTTTCCATCCGTACAATTCACCATTAGTTTCGAAATATTTCATGAAGCGTCTGAATTTCAAACTACATTCAAAAAGTTTCGACAGCTTTTGGAGACGCAGACATTTCGAAAAGGTTTTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATAGGGTGGAAAATTTTTTGATGAAAAAAATTCAAAAAAACTTTCAAGTAAAAAAAACCGAAGAAAAGAACTGATTCAAGGAATCACTTGTAAACATTAGTTGAAAAAAAATAGTGCATCAAAAACCAAGTCTTGTGCCATTTGTCCTTCACGGAGAAGAGAAATAAACGATTGTGAAACTTGACAAAATATGTCGGCCGCTTGAAACGTGCGTAGTATATAAACACCATCTGTTTTCACATTGTTGTCGGTCCGGAGTCGATGGATTATCCGACAAACCGCCCCTTTGATCCCATCGACATCCCAAATTGACCGTCATTTTTATGGGATTGAAACATGTGAATCTTACATTTCCGGGGTTTAAAGAAATATAACAGAAGAAATTTTTTTTCATATCTCACCATTCCA</canonical>
            <polymorphic>AGCACAGTAGTTTATCTGCTTTACATTAGCCTTTGATTTTCCTGAAATAGAGACTTCAAAGGAGTTGAAGCTCTATCTTCAAAACAAGCTTACCGATAGATATCAAAATGATTTTTCCACTTTTCAAAATATTTTCCATCCGTACAATTCACCATTAGTTTCGAAATATTTCATGAAGCGTCTGAATTTCAAACTACATTCAAAAAGTTTCGACAGCTTTTGGAGACGCAGACATTTCGAAAAGGTTTTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGAYTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATAGGGTGGAAAATTTTTTGATGAAAAAAATTCAAAAAAACTTTCAAGTAAAAAAAACCGAAGAAAAGAACTGATTCAAGGAATCACTTGTAAACATTAGTTGAAAAAAAATAGTGCATCAAAAACCAAGTCTTGTGCCATTTGTCCTTCACGGAGAAGAGAAATAAACGATTGTGAAACTTGACAAAATATGTCGGCCGCTTGAAACGTGCGTAGTATATAAACACCATCTGTTTTCACATTGTTGTCGGTCCGGAGTCGATGGATTATCCGACAAACCGCCCCTTTGATCCCATCGACATCCCAAATTGACCGTCATTTTTATGGGATTGAAACATGTGAATCTTACATTTCCGGGGTTTAAAGAAATATAACAGAAGAAATTTTTTTTCATATCTCACCATTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>498 260 167 67 8</canonical_bands>
                <polymorphic_bands>665 260 67 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTTACGAAATGATTATGA</pcr_primer_p1>
		<pcr_primer_p2>TATTCTTTGAACCCGATTGTT</pcr_primer_p2>
		<pcr_amplicon_size>348</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGAYTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8293</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>10514</contig_pos>
        <strand></strand>
        <context>ttttttcgay[T/C]cggycccggc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGAT</left_flank>
        <right_flank>CGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCACAGTAGTTTATCTGCTTTACATTAGCCTTTGATTTTCCTGAAATAGAGACTTCAAAGGAGTTGAAGCTCTATCTTCAAAACAAGCTTACCGATAGATATCAAAATGATTTTTCCACTTTTCAAAATATTTTCCATCCGTACAATTCACCATTAGTTTCGAAATATTTCATGAAGCGTCTGAATTTCAAACTACATTCAAAAAGTTTCGACAGCTTTTGGAGACGCAGACATTTCGAAAAGGTTTTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATAGGGTGGAAAATTTTTTGATGAAAAAAATTCAAAAAAACTTTCAAGTAAAAAAAACCGAAGAAAAGAACTGATTCAAGGAATCACTTGTAAACATTAGTTGAAAAAAAATAGTGCATCAAAAACCAAGTCTTGTGCCATTTGTCCTTCACGGAGAAGAGAAATAAACGATTGTGAAACTTGACAAAATATGTCGGCCGCTTGAAACGTGCGTAGTATATAAACACCATCTGTTTTCACATTGTTGTCGGTCCGGAGTCGATGGATTATCCGACAAACCGCCCCTTTGATCCCATCGACATCCCAAATTGACCGTCATTTTTATGGGATTGAAACATGTGAATCTTACATTTCCGGGGTTTAAAGAAATATAACAGAAGAAATTTTTTTTCATATCTCACCATTCCAA</canonical>
            <polymorphic>GCACAGTAGTTTATCTGCTTTACATTAGCCTTTGATTTTCCTGAAATAGAGACTTCAAAGGAGTTGAAGCTCTATCTTCAAAACAAGCTTACCGATAGATATCAAAATGATTTTTCCACTTTTCAAAATATTTTCCATCCGTACAATTCACCATTAGTTTCGAAATATTTCATGAAGCGTCTGAATTTCAAACTACATTCAAAAAGTTTCGACAGCTTTTGGAGACGCAGACATTTCGAAAAGGTTTTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATYCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATAGGGTGGAAAATTTTTTGATGAAAAAAATTCAAAAAAACTTTCAAGTAAAAAAAACCGAAGAAAAGAACTGATTCAAGGAATCACTTGTAAACATTAGTTGAAAAAAAATAGTGCATCAAAAACCAAGTCTTGTGCCATTTGTCCTTCACGGAGAAGAGAAATAAACGATTGTGAAACTTGACAAAATATGTCGGCCGCTTGAAACGTGCGTAGTATATAAACACCATCTGTTTTCACATTGTTGTCGGTCCGGAGTCGATGGATTATCCGACAAACCGCCCCTTTGATCCCATCGACATCCCAAATTGACCGTCATTTTTATGGGATTGAAACATGTGAATCTTACATTTCCGGGGTTTAAAGAAATATAACAGAAGAAATTTTTTTTCATATCTCACCATTCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>497 175 167 85 68 8</canonical_bands>
                <polymorphic_bands>664 175 85 68 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>497 260 167 68 8</canonical_bands>
                <polymorphic_bands>664 260 68 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTTACGAAATGATTATGA</pcr_primer_p1>
		<pcr_primer_p2>TATTCTTTGAACCCGATTGTT</pcr_primer_p2>
		<pcr_amplicon_size>348</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATYCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8294</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>10518</contig_pos>
        <strand></strand>
        <context>ttcgayycgg[C/T]cccggcccgg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGG</left_flank>
        <right_flank>CCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTAGTTTATCTGCTTTACATTAGCCTTTGATTTTCCTGAAATAGAGACTTCAAAGGAGTTGAAGCTCTATCTTCAAAACAAGCTTACCGATAGATATCAAAATGATTTTTCCACTTTTCAAAATATTTTCCATCCGTACAATTCACCATTAGTTTCGAAATATTTCATGAAGCGTCTGAATTTCAAACTACATTCAAAAAGTTTCGACAGCTTTTGGAGACGCAGACATTTCGAAAAGGTTTTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATAGGGTGGAAAATTTTTTGATGAAAAAAATTCAAAAAAACTTTCAAGTAAAAAAAACCGAAGAAAAGAACTGATTCAAGGAATCACTTGTAAACATTAGTTGAAAAAAAATAGTGCATCAAAAACCAAGTCTTGTGCCATTTGTCCTTCACGGAGAAGAGAAATAAACGATTGTGAAACTTGACAAAATATGTCGGCCGCTTGAAACGTGCGTAGTATATAAACACCATCTGTTTTCACATTGTTGTCGGTCCGGAGTCGATGGATTATCCGACAAACCGCCCCTTTGATCCCATCGACATCCCAAATTGACCGTCATTTTTATGGGATTGAAACATGTGAATCTTACATTTCCGGGGTTTAAAGAAATATAACAGAAGAAATTTTTTTTCATATCTCACCATTCCAAAATT</canonical>
            <polymorphic>AGTAGTTTATCTGCTTTACATTAGCCTTTGATTTTCCTGAAATAGAGACTTCAAAGGAGTTGAAGCTCTATCTTCAAAACAAGCTTACCGATAGATATCAAAATGATTTTTCCACTTTTCAAAATATTTTCCATCCGTACAATTCACCATTAGTTTCGAAATATTTCATGAAGCGTCTGAATTTCAAACTACATTCAAAAAGTTTCGACAGCTTTTGGAGACGCAGACATTTCGAAAAGGTTTTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGYCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATAGGGTGGAAAATTTTTTGATGAAAAAAATTCAAAAAAACTTTCAAGTAAAAAAAACCGAAGAAAAGAACTGATTCAAGGAATCACTTGTAAACATTAGTTGAAAAAAAATAGTGCATCAAAAACCAAGTCTTGTGCCATTTGTCCTTCACGGAGAAGAGAAATAAACGATTGTGAAACTTGACAAAATATGTCGGCCGCTTGAAACGTGCGTAGTATATAAACACCATCTGTTTTCACATTGTTGTCGGTCCGGAGTCGATGGATTATCCGACAAACCGCCCCTTTGATCCCATCGACATCCCAAATTGACCGTCATTTTTATGGGATTGAAACATGTGAATCTTACATTTCCGGGGTTTAAAGAAATATAACAGAAGAAATTTTTTTTCATATCTCACCATTCCAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>430 274 178 59 48 11</canonical_bands>
                <polymorphic_bands>430 274 178 59 59</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>494 280 226</canonical_bands>
                <polymorphic_bands>488 280 232</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>466 256 216 24 18 9 6 5</canonical_bands>
                <polymorphic_bands>466 256 216 30 18 9 5</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>256 216 193 128 62 41 24 24 18 18 9 6 5</canonical_bands>
                <polymorphic_bands>256 216 193 128 62 41 30 24 18 18 9 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTTACGAAATGATTATGA</pcr_primer_p1>
		<pcr_primer_p2>TATTCTTTGAACCCGATTGTT</pcr_primer_p2>
		<pcr_amplicon_size>348</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGYCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8295</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>10541</contig_pos>
        <strand></strand>
        <context>cgggtcaccg[T/C]gtcggcccga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCG</left_flank>
        <right_flank>GTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCTTTGATTTTCCTGAAATAGAGACTTCAAAGGAGTTGAAGCTCTATCTTCAAAACAAGCTTACCGATAGATATCAAAATGATTTTTCCACTTTTCAAAATATTTTCCATCCGTACAATTCACCATTAGTTTCGAAATATTTCATGAAGCGTCTGAATTTCAAACTACATTCAAAAAGTTTCGACAGCTTTTGGAGACGCAGACATTTCGAAAAGGTTTTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATAGGGTGGAAAATTTTTTGATGAAAAAAATTCAAAAAAACTTTCAAGTAAAAAAAACCGAAGAAAAGAACTGATTCAAGGAATCACTTGTAAACATTAGTTGAAAAAAAATAGTGCATCAAAAACCAAGTCTTGTGCCATTTGTCCTTCACGGAGAAGAGAAATAAACGATTGTGAAACTTGACAAAATATGTCGGCCGCTTGAAACGTGCGTAGTATATAAACACCATCTGTTTTCACATTGTTGTCGGTCCGGAGTCGATGGATTATCCGACAAACCGCCCCTTTGATCCCATCGACATCCCAAATTGACCGTCATTTTTATGGGATTGAAACATGTGAATCTTACATTTCCGGGGTTTAAAGAAATATAACAGAAGAAATTTTTTTTCATATCTCACCATTCCAAAATTTCGGCTGTAAGTATTCAAAATTG</canonical>
            <polymorphic>GCCTTTGATTTTCCTGAAATAGAGACTTCAAAGGAGTTGAAGCTCTATCTTCAAAACAAGCTTACCGATAGATATCAAAATGATTTTTCCACTTTTCAAAATATTTTCCATCCGTACAATTCACCATTAGTTTCGAAATATTTCATGAAGCGTCTGAATTTCAAACTACATTCAAAAAGTTTCGACAGCTTTTGGAGACGCAGACATTTCGAAAAGGTTTTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGYGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATAGGGTGGAAAATTTTTTGATGAAAAAAATTCAAAAAAACTTTCAAGTAAAAAAAACCGAAGAAAAGAACTGATTCAAGGAATCACTTGTAAACATTAGTTGAAAAAAAATAGTGCATCAAAAACCAAGTCTTGTGCCATTTGTCCTTCACGGAGAAGAGAAATAAACGATTGTGAAACTTGACAAAATATGTCGGCCGCTTGAAACGTGCGTAGTATATAAACACCATCTGTTTTCACATTGTTGTCGGTCCGGAGTCGATGGATTATCCGACAAACCGCCCCTTTGATCCCATCGACATCCCAAATTGACCGTCATTTTTATGGGATTGAAACATGTGAATCTTACATTTCCGGGGTTTAAAGAAATATAACAGAAGAAATTTTTTTTCATATCTCACCATTCCAAAATTTCGGCTGTAAGTATTCAAAATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>498 380 122</canonical_bands>
                <polymorphic_bands>878 122</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>217 156 102 91 78 59 44 36 35 32 30 27 25 21 15 14 13 5</canonical_bands>
                <polymorphic_bands>217 156 102 91 78 59 44 36 35 32 32 30 25 21 15 14 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTTACGAAATGATTATGA</pcr_primer_p1>
		<pcr_primer_p2>TATTCTTTGAACCCGATTGTT</pcr_primer_p2>
		<pcr_amplicon_size>348</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGYGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8296</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>10581</contig_pos>
        <strand>+</strand>
        <context>AAACTGAATA[C/T]GAACAAAACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATA</left_flank>
        <right_flank>GAACAAAACAATCGGGTTCAAAGAATAGGGTGGAAAATTTTTTGATGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTCTATCTTCAAAACAAGCTTACCGATAGATATCAAAATGATTTTTCCACTTTTCAAAATATTTTCCATCCGTACAATTCACCATTAGTTTCGAAATATTTCATGAAGCGTCTGAATTTCAAACTACATTCAAAAAGTTTCGACAGCTTTTGGAGACGCAGACATTTCGAAAAGGTTTTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATAGGGTGGAAAATTTTTTGATGAAAAAAATTCAAAAAAACTTTCAAGTAAAAAAAACCGAAGAAAAGAACTGATTCAAGGAATCACTTGTAAACATTAGTTGAAAAAAAATAGTGCATCAAAAACCAAGTCTTGTGCCATTTGTCCTTCACGGAGAAGAGAAATAAACGATTGTGAAACTTGACAAAATATGTCGGCCGCTTGAAACGTGCGTAGTATATAAACACCATCTGTTTTCACATTGTTGTCGGTCCGGAGTCGATGGATTATCCGACAAACCGCCCCTTTGATCCCATCGACATCCCAAATTGACCGTCATTTTTATGGGATTGAAACATGTGAATCTTACATTTCCGGGGTTTAAAGAAATATAACAGAAGAAATTTTTTTTCATATCTCACCATTCCAAAATTTCGGCTGTAAGTATTCAAAATTGATTTTCAAAATTCCGTATTCCTGTGATGCTTTCAACAATT</canonical>
            <polymorphic>AGCTCTATCTTCAAAACAAGCTTACCGATAGATATCAAAATGATTTTTCCACTTTTCAAAATATTTTCCATCCGTACAATTCACCATTAGTTTCGAAATATTTCATGAAGCGTCTGAATTTCAAACTACATTCAAAAAGTTTCGACAGCTTTTGGAGACGCAGACATTTCGAAAAGGTTTTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATAYGAACAAAACAATCGGGTTCAAAGAATAGGGTGGAAAATTTTTTGATGAAAAAAATTCAAAAAAACTTTCAAGTAAAAAAAACCGAAGAAAAGAACTGATTCAAGGAATCACTTGTAAACATTAGTTGAAAAAAAATAGTGCATCAAAAACCAAGTCTTGTGCCATTTGTCCTTCACGGAGAAGAGAAATAAACGATTGTGAAACTTGACAAAATATGTCGGCCGCTTGAAACGTGCGTAGTATATAAACACCATCTGTTTTCACATTGTTGTCGGTCCGGAGTCGATGGATTATCCGACAAACCGCCCCTTTGATCCCATCGACATCCCAAATTGACCGTCATTTTTATGGGATTGAAACATGTGAATCTTACATTTCCGGGGTTTAAAGAAATATAACAGAAGAAATTTTTTTTCATATCTCACCATTCCAAAATTTCGGCTGTAAGTATTCAAAATTGATTTTCAAAATTCCGTATTCCTGTGATGCTTTCAACAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTTACGAAATGATTATGA</pcr_primer_p1>
		<pcr_primer_p2>CAGTTCTTTTCTTCGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>418</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATAGGGTGGAAAATTTTTTGATGAAAAAAATTCAAAAAAACTTTCAAGTAAAAAAAACCGAAGAAAAGAACTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATAYGAACAAAACAATCGGGTTCAAAGAATAGGGTGGAAAATTTTTTGATGAAAAAAATTCAAAAAAACTTTCAAGTAAAAAAAACCGAAGAAAAGAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8297</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>10757</contig_pos>
        <strand>+</strand>
        <context>TTGTCCTTCA[C/T]GGAGAAGAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAAAAAAATAGTGCATCAAAAACCAAGTCTTGTGCCATTTGTCCTTCA</left_flank>
        <right_flank>GGAGAAGAGAAATAAACGATTGTGAAACTTGACAAAATATGTCGGCCGCT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATAGGGTGGAAAATTTTTTGATGAAAAAAATTCAAAAAAACTTTCAAGTAAAAAAAACCGAAGAAAAGAACTGATTCAAGGAATCACTTGTAAACATTAGTTGAAAAAAAATAGTGCATCAAAAACCAAGTCTTGTGCCATTTGTCCTTCACGGAGAAGAGAAATAAACGATTGTGAAACTTGACAAAATATGTCGGCCGCTTGAAACGTGCGTAGTATATAAACACCATCTGTTTTCACATTGTTGTCGGTCCGGAGTCGATGGATTATCCGACAAACCGCCCCTTTGATCCCATCGACATCCCAAATTGACCGTCATTTTTATGGGATTGAAACATGTGAATCTTACATTTCCGGGGTTTAAAGAAATATAACAGAAGAAATTTTTTTTCATATCTCACCATTCCAAAATTTCGGCTGTAAGTATTCAAAATTGATTTTCAAAATTCCGTATTCCTGTGATGCTTTCAACAATTCTATGCATTTAACACCATAATTCATACATCACCGAATAATATTTTCCTCTTTTTTCAGACTTCAGATGTTATGTGGGTTGCTTGCTTTCGTCTAGCCCAATATGCTATGCTAACTTATTTTCTAAAATTTTGAAAAAGGAACATTTTTCATTTTATTTCACACAGTTCCAAACCAC</canonical>
            <polymorphic>GTTTTTTTGTTACGAAATGATTATGATACTTCAGCCAGGGTCAGGTTCTGAAATGTCAAAATTCTGAAATTTTGGAACTTTTTCGAAGTTTTTATTAAATTTTCGGAAAAATATCGAAGTTTCACATTTTTGTAAGAGTAGATTACTCCAGGATTTTTCTTTTTTAAGCGAAATTCAATCATTTTCTTTAAAAAAATTTTAAAAATCAGGTACCCGGGTCGACCGGGCCGGGCGGGCCGGAAGAATTTTTTTCGATTCGGCCCCGGCCCGGCCCGGGTCACCGTGTCGGCCCGAAATTTGACAAGTATGGTGCAAACTGAATATGAACAAAACAATCGGGTTCAAAGAATAGGGTGGAAAATTTTTTGATGAAAAAAATTCAAAAAAACTTTCAAGTAAAAAAAACCGAAGAAAAGAACTGATTCAAGGAATCACTTGTAAACATTAGTTGAAAAAAAATAGTGCATCAAAAACCAAGTCTTGTGCCATTTGTCCTTCAYGGAGAAGAGAAATAAACGATTGTGAAACTTGACAAAATATGTCGGCCGCTTGAAACGTGCGTAGTATATAAACACCATCTGTTTTCACATTGTTGTCGGTCCGGAGTCGATGGATTATCCGACAAACCGCCCCTTTGATCCCATCGACATCCCAAATTGACCGTCATTTTTATGGGATTGAAACATGTGAATCTTACATTTCCGGGGTTTAAAGAAATATAACAGAAGAAATTTTTTTTCATATCTCACCATTCCAAAATTTCGGCTGTAAGTATTCAAAATTGATTTTCAAAATTCCGTATTCCTGTGATGCTTTCAACAATTCTATGCATTTAACACCATAATTCATACATCACCGAATAATATTTTCCTCTTTTTTCAGACTTCAGATGTTATGTGGGTTGCTTGCTTTCGTCTAGCCCAATATGCTATGCTAACTTATTTTCTAAAATTTTGAAAAAGGAACATTTTTCATTTTATTTCACACAGTTCCAAACCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>156 124 102 85 78 61 59 44 44 35 30 29 27 25 21 17 15 14 13 13 5 2 1</canonical_bands>
                <polymorphic_bands>156 124 102 85 78 61 59 44 44 39 35 30 29 27 21 17 15 13 13 5 2 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCACTTGTAAACATTAGTTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GTTTCAATCCCATAAAAATGAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TCACTTGTAAACATTAGTTGAAAAAAAATAGTGCATCAAAAACCAAGTCTTGTGCCATTTGTCCTTCACGGAGAAGAGAAATAAACGATTGTGAAACTTGACAAAATATGTCGGCCGCTTGAAACGTGCGTAGTATATAAACACCATCTGTTTTCACATTGTTGTCGGTCCGGAGTCGATGGATTATCCGACAAACCGCCCCTTTGATCCCATCGACATCCCAAATTGACCGTCATTTTTATGGGATTGAAAC</canonical_amplicon>
		<polymorphic_amplicon>TCACTTGTAAACATTAGTTGAAAAAAAATAGTGCATCAAAAACCAAGTCTTGTGCCATTTGTCCTTCAYGGAGAAGAGAAATAAACGATTGTGAAACTTGACAAAATATGTCGGCCGCTTGAAACGTGCGTAGTATATAAACACCATCTGTTTTCACATTGTTGTCGGTCCGGAGTCGATGGATTATCCGACAAACCGCCCCTTTGATCCCATCGACATCCCAAATTGACCGTCATTTTTATGGGATTGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8298</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>12926</contig_pos>
        <strand>+</strand>
        <context>CGAAAAAATG[C/T]TCTGGCCTAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTATTTTTCACATTATTTTGTGGTAGGTGCAAAAAAGTCCGAAAAAATG</left_flank>
        <right_flank>TCTGGCCTACCTTCTTTAAAACCATAAAGTATTGCAGCTGTTACAATATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTGAAACTATTTCTATTTTTCAAAACTTTAATGTCCGGAGTATGAATACCGGTCTCACTAAAATATCACAAGCACTGAACCAAAGAAAATGTTTTTTCCACATGACAAACAACCCCTCAGTAATACCTACAAAGCGGCACCAAGTTTCAAAAGCCCTCAAATACGAACAACTTTTCCTACTTTGCAACACCCGAATTCTTAACAATAACTTTTCACATCTTAACCATTATCGACATTCCCATTCACATGTTCGGCGCGTATCTTATTCAAAACTCTAAATTGTATGCGATCTGTGAAATGGAGCATGTTGAATTTACATTTTTGGAGTGTTCTTTTGGACTGGTTGGATGGTTTTCTATCCCGTCCTTTTATGCTCTATCCAGCTCTTGCTGGGTATACAGAGGGAGTTTTAGTGCGGCTTGGGATGTCTACAGCTGCGATGGCTTATCTATTTTTCACATTATTTTGTGGTAGGTGCAAAAAAGTCCGAAAAAATGCTCTGGCCTACCTTCTTTAAAACCATAAAGTATTGCAGCTGTTACAATATCCATATTTGGTATAATGGAAAATATATTCAACATTTTGTTTGCTGAAAACCATATCTGGAGGAAAATTCGATTTCCCTATTTTATGATCAATTGGATTTTTGTATTGACCCATTTTTTGTACCCAATTTTTAACACTCCAAATCAAAAACATGCTATTGAATTTCTGAAAAATGTAAAACCAACTGACTGTTGATTTTCAGAGACTTCCAGAAATCGACCCATCGGTTTTCCGCCATCCAAATTTTCTTGTGCTATCCCTTGATTTGAAACCCGTTTTTCCAATAGTTCTTGCGTGTTTTCTCGGCACCTGGCAAACTATGGTTTTTGTCTATTTAATAGTTTCGAATCTGGAAAAATGTGCCAAAACAATGACCCTATCTAAAACGACGCTAAAAATGCAGACCAAATTTTTGAGAGCTATTTCGATTCAAATTGTTGTACCCCTTATCG</canonical>
            <polymorphic>AGCTGAAACTATTTCTATTTTTCAAAACTTTAATGTCCGGAGTATGAATACCGGTCTCACTAAAATATCACAAGCACTGAACCAAAGAAAATGTTTTTTCCACATGACAAACAACCCCTCAGTAATACCTACAAAGCGGCACCAAGTTTCAAAAGCCCTCAAATACGAACAACTTTTCCTACTTTGCAACACCCGAATTCTTAACAATAACTTTTCACATCTTAACCATTATCGACATTCCCATTCACATGTTCGGCGCGTATCTTATTCAAAACTCTAAATTGTATGCGATCTGTGAAATGGAGCATGTTGAATTTACATTTTTGGAGTGTTCTTTTGGACTGGTTGGATGGTTTTCTATCCCGTCCTTTTATGCTCTATCCAGCTCTTGCTGGGTATACAGAGGGAGTTTTAGTGCGGCTTGGGATGTCTACAGCTGCGATGGCTTATCTATTTTTCACATTATTTTGTGGTAGGTGCAAAAAAGTCCGAAAAAATGYTCTGGCCTACCTTCTTTAAAACCATAAAGTATTGCAGCTGTTACAATATCCATATTTGGTATAATGGAAAATATATTCAACATTTTGTTTGCTGAAAACCATATCTGGAGGAAAATTCGATTTCCCTATTTTATGATCAATTGGATTTTTGTATTGACCCATTTTTTGTACCCAATTTTTAACACTCCAAATCAAAAACATGCTATTGAATTTCTGAAAAATGTAAAACCAACTGACTGTTGATTTTCAGAGACTTCCAGAAATCGACCCATCGGTTTTCCGCCATCCAAATTTTCTTGTGCTATCCCTTGATTTGAAACCCGTTTTTCCAATAGTTCTTGCGTGTTTTCTCGGCACCTGGCAAACTATGGTTTTTGTCTATTTAATAGTTTCGAATCTGGAAAAATGTGCCAAAACAATGACCCTATCTAAAACGACGCTAAAAATGCAGACCAAATTTTTGAGAGCTATTTCGATTCAAATTGTTGTACCCCTTATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGTATACAGAGGGAGTTTTAGT</pcr_primer_p1>
		<pcr_primer_p2>CAATTGATCATAAAATAGGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGGTATACAGAGGGAGTTTTAGTGCGGCTTGGGATGTCTACAGCTGCGATGGCTTATCTATTTTTCACATTATTTTGTGGTAGGTGCAAAAAAGTCCGAAAAAATGCTCTGGCCTACCTTCTTTAAAACCATAAAGTATTGCAGCTGTTACAATATCCATATTTGGTATAATGGAAAATATATTCAACATTTTGTTTGCTGAAAACCATATCTGGAGGAAAATTCGATTTCCCTATTTTATGATCAATTG</canonical_amplicon>
		<polymorphic_amplicon>GGGTATACAGAGGGAGTTTTAGTGCGGCTTGGGATGTCTACAGCTGCGATGGCTTATCTATTTTTCACATTATTTTGTGGTAGGTGCAAAAAAGTCCGAAAAAATGYTCTGGCCTACCTTCTTTAAAACCATAAAGTATTGCAGCTGTTACAATATCCATATTTGGTATAATGGAAAATATATTCAACATTTTGTTTGCTGAAAACCATATCTGGAGGAAAATTCGATTTCCCTATTTTATGATCAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8299</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>12885</contig_pos>
        <strand>+</strand>
        <context>ATCTATTTTT[C/T]ACATTATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTTAGTGCGGCTTGGGATGTCTACAGCTGCGATGGCTTATCTATTTTT</left_flank>
        <right_flank>ACATTATTTTGTGGTAGGTGCAAAAAAGTCCGAAAAAATGCTCTGGCCTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAATGTGAAGTATGCTAAACATCCATTGTAAGAGTGCAGCAGCTGAAACTATTTCTATTTTTCAAAACTTTAATGTCCGGAGTATGAATACCGGTCTCACTAAAATATCACAAGCACTGAACCAAAGAAAATGTTTTTTCCACATGACAAACAACCCCTCAGTAATACCTACAAAGCGGCACCAAGTTTCAAAAGCCCTCAAATACGAACAACTTTTCCTACTTTGCAACACCCGAATTCTTAACAATAACTTTTCACATCTTAACCATTATCGACATTCCCATTCACATGTTCGGCGCGTATCTTATTCAAAACTCTAAATTGTATGCGATCTGTGAAATGGAGCATGTTGAATTTACATTTTTGGAGTGTTCTTTTGGACTGGTTGGATGGTTTTCTATCCCGTCCTTTTATGCTCTATCCAGCTCTTGCTGGGTATACAGAGGGAGTTTTAGTGCGGCTTGGGATGTCTACAGCTGCGATGGCTTATCTATTTTTCACATTATTTTGTGGTAGGTGCAAAAAAGTCCGAAAAAATGCTCTGGCCTACCTTCTTTAAAACCATAAAGTATTGCAGCTGTTACAATATCCATATTTGGTATAATGGAAAATATATTCAACATTTTGTTTGCTGAAAACCATATCTGGAGGAAAATTCGATTTCCCTATTTTATGATCAATTGGATTTTTGTATTGACCCATTTTTTGTACCCAATTTTTAACACTCCAAATCAAAAACATGCTATTGAATTTCTGAAAAATGTAAAACCAACTGACTGTTGATTTTCAGAGACTTCCAGAAATCGACCCATCGGTTTTCCGCCATCCAAATTTTCTTGTGCTATCCCTTGATTTGAAACCCGTTTTTCCAATAGTTCTTGCGTGTTTTCTCGGCACCTGGCAAACTATGGTTTTTGTCTATTTAATAGTTTCGAATCTGGAAAAATGTGCCAAAACAATGACCCTATCTAAAACGACGCTAAAAATGCAGACCAAATT</canonical>
            <polymorphic>CCAATGTGAAGTATGCTAAACATCCATTGTAAGAGTGCAGCAGCTGAAACTATTTCTATTTTTCAAAACTTTAATGTCCGGAGTATGAATACCGGTCTCACTAAAATATCACAAGCACTGAACCAAAGAAAATGTTTTTTCCACATGACAAACAACCCCTCAGTAATACCTACAAAGCGGCACCAAGTTTCAAAAGCCCTCAAATACGAACAACTTTTCCTACTTTGCAACACCCGAATTCTTAACAATAACTTTTCACATCTTAACCATTATCGACATTCCCATTCACATGTTCGGCGCGTATCTTATTCAAAACTCTAAATTGTATGCGATCTGTGAAATGGAGCATGTTGAATTTACATTTTTGGAGTGTTCTTTTGGACTGGTTGGATGGTTTTCTATCCCGTCCTTTTATGCTCTATCCAGCTCTTGCTGGGTATACAGAGGGAGTTTTAGTGCGGCTTGGGATGTCTACAGCTGCGATGGCTTATCTATTTTTYACATTATTTTGTGGTAGGTGCAAAAAAGTCCGAAAAAATGCTCTGGCCTACCTTCTTTAAAACCATAAAGTATTGCAGCTGTTACAATATCCATATTTGGTATAATGGAAAATATATTCAACATTTTGTTTGCTGAAAACCATATCTGGAGGAAAATTCGATTTCCCTATTTTATGATCAATTGGATTTTTGTATTGACCCATTTTTTGTACCCAATTTTTAACACTCCAAATCAAAAACATGCTATTGAATTTCTGAAAAATGTAAAACCAACTGACTGTTGATTTTCAGAGACTTCCAGAAATCGACCCATCGGTTTTCCGCCATCCAAATTTTCTTGTGCTATCCCTTGATTTGAAACCCGTTTTTCCAATAGTTCTTGCGTGTTTTCTCGGCACCTGGCAAACTATGGTTTTTGTCTATTTAATAGTTTCGAATCTGGAAAAATGTGCCAAAACAATGACCCTATCTAAAACGACGCTAAAAATGCAGACCAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>205 117 86 63 54 50 50 49 44 43 39 34 30 29 26 26 12 11 11 8 7 6</canonical_bands>
                <polymorphic_bands>205 117 86 63 55 54 50 50 49 44 39 34 30 29 26 26 11 11 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGTATACAGAGGGAGTTTTAGT</pcr_primer_p1>
		<pcr_primer_p2>CAATTGATCATAAAATAGGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGGTATACAGAGGGAGTTTTAGTGCGGCTTGGGATGTCTACAGCTGCGATGGCTTATCTATTTTTCACATTATTTTGTGGTAGGTGCAAAAAAGTCCGAAAAAATGCTCTGGCCTACCTTCTTTAAAACCATAAAGTATTGCAGCTGTTACAATATCCATATTTGGTATAATGGAAAATATATTCAACATTTTGTTTGCTGAAAACCATATCTGGAGGAAAATTCGATTTCCCTATTTTATGATCAATTG</canonical_amplicon>
		<polymorphic_amplicon>GGGTATACAGAGGGAGTTTTAGTGCGGCTTGGGATGTCTACAGCTGCGATGGCTTATCTATTTTTYACATTATTTTGTGGTAGGTGCAAAAAAGTCCGAAAAAATGCTCTGGCCTACCTTCTTTAAAACCATAAAGTATTGCAGCTGTTACAATATCCATATTTGGTATAATGGAAAATATATTCAACATTTTGTTTGCTGAAAACCATATCTGGAGGAAAATTCGATTTCCCTATTTTATGATCAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8300</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>12744</contig_pos>
        <strand>+</strand>
        <context>TGTTGAATTT[A/T]CATTTTTGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCAAAACTCTAAATTGTATGCGATCTGTGAAATGGAGCATGTTGAATTT</left_flank>
        <right_flank>CATTTTTGGAGTGTTCTTTTGGACTGGTTGGATGGTTTTCTATCCCGTCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAAATAATGTACTCCCTGCACCTACCTCCGAGATGTACCTCAAGATCCCATGTACCCTAGGAACTCAATATACCCGGGCGGACTGAACTCTTACCTAGAGCTTTTTCAGATTCTGATTTCGAACTTCTGAATGTGCTACCCAATGTGAAGTATGCTAAACATCCATTGTAAGAGTGCAGCAGCTGAAACTATTTCTATTTTTCAAAACTTTAATGTCCGGAGTATGAATACCGGTCTCACTAAAATATCACAAGCACTGAACCAAAGAAAATGTTTTTTCCACATGACAAACAACCCCTCAGTAATACCTACAAAGCGGCACCAAGTTTCAAAAGCCCTCAAATACGAACAACTTTTCCTACTTTGCAACACCCGAATTCTTAACAATAACTTTTCACATCTTAACCATTATCGACATTCCCATTCACATGTTCGGCGCGTATCTTATTCAAAACTCTAAATTGTATGCGATCTGTGAAATGGAGCATGTTGAATTTACATTTTTGGAGTGTTCTTTTGGACTGGTTGGATGGTTTTCTATCCCGTCCTTTTATGCTCTATCCAGCTCTTGCTGGGTATACAGAGGGAGTTTTAGTGCGGCTTGGGATGTCTACAGCTGCGATGGCTTATCTATTTTTCACATTATTTTGTGGTAGGTGCAAAAAAGTCCGAAAAAATGCTCTGGCCTACCTTCTTTAAAACCATAAAGTATTGCAGCTGTTACAATATCCATATTTGGTATAATGGAAAATATATTCAACATTTTGTTTGCTGAAAACCATATCTGGAGGAAAATTCGATTTCCCTATTTTATGATCAATTGGATTTTTGTATTGACCCATTTTTTGTACCCAATTTTTAACACTCCAAATCAAAAACATGCTATTGAATTTCTGAAAAATGTAAAACCAACTGACTGTTGATTTTCAGAGACTTCCAGAAATCGACCCATCGGTTTTCCGCCATCCAAATTTTCTTGTGCTATCCCTTGATTTGAA</canonical>
            <polymorphic>TTTAAATAATGTACTCCCTGCACCTACCTCCGAGATGTACCTCAAGATCCCATGTACCCTAGGAACTCAATATACCCGGGCGGACTGAACTCTTACCTAGAGCTTTTTCAGATTCTGATTTCGAACTTCTGAATGTGCTACCCAATGTGAAGTATGCTAAACATCCATTGTAAGAGTGCAGCAGCTGAAACTATTTCTATTTTTCAAAACTTTAATGTCCGGAGTATGAATACCGGTCTCACTAAAATATCACAAGCACTGAACCAAAGAAAATGTTTTTTCCACATGACAAACAACCCCTCAGTAATACCTACAAAGCGGCACCAAGTTTCAAAAGCCCTCAAATACGAACAACTTTTCCTACTTTGCAACACCCGAATTCTTAACAATAACTTTTCACATCTTAACCATTATCGACATTCCCATTCACATGTTCGGCGCGTATCTTATTCAAAACTCTAAATTGTATGCGATCTGTGAAATGGAGCATGTTGAATTTWCATTTTTGGAGTGTTCTTTTGGACTGGTTGGATGGTTTTCTATCCCGTCCTTTTATGCTCTATCCAGCTCTTGCTGGGTATACAGAGGGAGTTTTAGTGCGGCTTGGGATGTCTACAGCTGCGATGGCTTATCTATTTTTCACATTATTTTGTGGTAGGTGCAAAAAAGTCCGAAAAAATGCTCTGGCCTACCTTCTTTAAAACCATAAAGTATTGCAGCTGTTACAATATCCATATTTGGTATAATGGAAAATATATTCAACATTTTGTTTGCTGAAAACCATATCTGGAGGAAAATTCGATTTCCCTATTTTATGATCAATTGGATTTTTGTATTGACCCATTTTTTGTACCCAATTTTTAACACTCCAAATCAAAAACATGCTATTGAATTTCTGAAAAATGTAAAACCAACTGACTGTTGATTTTCAGAGACTTCCAGAAATCGACCCATCGGTTTTCCGCCATCCAAATTTTCTTGTGCTATCCCTTGATTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTTCAAAAGCCCTCAAATA</pcr_primer_p1>
		<pcr_primer_p2>AAGAGCTGGATAGAGCATAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGTTTCAAAAGCCCTCAAATACGAACAACTTTTCCTACTTTGCAACACCCGAATTCTTAACAATAACTTTTCACATCTTAACCATTATCGACATTCCCATTCACATGTTCGGCGCGTATCTTATTCAAAACTCTAAATTGTATGCGATCTGTGAAATGGAGCATGTTGAATTTACATTTTTGGAGTGTTCTTTTGGACTGGTTGGATGGTTTTCTATCCCGTCCTTTTATGCTCTATCCAGCTCTT</canonical_amplicon>
		<polymorphic_amplicon>AGTTTCAAAAGCCCTCAAATACGAACAACTTTTCCTACTTTGCAACACCCGAATTCTTAACAATAACTTTTCACATCTTAACCATTATCGACATTCCCATTCACATGTTCGGCGCGTATCTTATTCAAAACTCTAAATTGTATGCGATCTGTGAAATGGAGCATGTTGAATTTWCATTTTTGGAGTGTTCTTTTGGACTGGTTGGATGGTTTTCTATCCCGTCCTTTTATGCTCTATCCAGCTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8301</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>12647</contig_pos>
        <strand>+</strand>
        <context>CTTTTCACAT[C/T]TTAACCATTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACTTTTCCTACTTTGCAACACCCGAATTCTTAACAATAACTTTTCACAT</left_flank>
        <right_flank>TTAACCATTATCGACATTCCCATTCACATGTTCGGCGCGTATCTTATTCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGTGCCGGTATAACTGATTGCAATGGGTTATACCGAAAATGGCACTAATATGTAGTAAACATGCAGTGGAGAAATGTGATGCCAATTTCAAATTATTTAAATAATGTACTCCCTGCACCTACCTCCGAGATGTACCTCAAGATCCCATGTACCCTAGGAACTCAATATACCCGGGCGGACTGAACTCTTACCTAGAGCTTTTTCAGATTCTGATTTCGAACTTCTGAATGTGCTACCCAATGTGAAGTATGCTAAACATCCATTGTAAGAGTGCAGCAGCTGAAACTATTTCTATTTTTCAAAACTTTAATGTCCGGAGTATGAATACCGGTCTCACTAAAATATCACAAGCACTGAACCAAAGAAAATGTTTTTTCCACATGACAAACAACCCCTCAGTAATACCTACAAAGCGGCACCAAGTTTCAAAAGCCCTCAAATACGAACAACTTTTCCTACTTTGCAACACCCGAATTCTTAACAATAACTTTTCACATCTTAACCATTATCGACATTCCCATTCACATGTTCGGCGCGTATCTTATTCAAAACTCTAAATTGTATGCGATCTGTGAAATGGAGCATGTTGAATTTACATTTTTGGAGTGTTCTTTTGGACTGGTTGGATGGTTTTCTATCCCGTCCTTTTATGCTCTATCCAGCTCTTGCTGGGTATACAGAGGGAGTTTTAGTGCGGCTTGGGATGTCTACAGCTGCGATGGCTTATCTATTTTTCACATTATTTTGTGGTAGGTGCAAAAAAGTCCGAAAAAATGCTCTGGCCTACCTTCTTTAAAACCATAAAGTATTGCAGCTGTTACAATATCCATATTTGGTATAATGGAAAATATATTCAACATTTTGTTTGCTGAAAACCATATCTGGAGGAAAATTCGATTTCCCTATTTTATGATCAATTGGATTTTTGTATTGACCCATTTTTTGTACCCAATTTTTAACACTCCAAATCAAAAACATGCTATTGAATTTCTGAAAAA</canonical>
            <polymorphic>TTAGTGCCGGTATAACTGATTGCAATGGGTTATACCGAAAATGGCACTAATATGTAGTAAACATGCAGTGGAGAAATGTGATGCCAATTTCAAATTATTTAAATAATGTACTCCCTGCACCTACCTCCGAGATGTACCTCAAGATCCCATGTACCCTAGGAACTCAATATACCCGGGCGGACTGAACTCTTACCTAGAGCTTTTTCAGATTCTGATTTCGAACTTCTGAATGTGCTACCCAATGTGAAGTATGCTAAACATCCATTGTAAGAGTGCAGCAGCTGAAACTATTTCTATTTTTCAAAACTTTAATGTCCGGAGTATGAATACCGGTCTCACTAAAATATCACAAGCACTGAACCAAAGAAAATGTTTTTTCCACATGACAAACAACCCCTCAGTAATACCTACAAAGCGGCACCAAGTTTCAAAAGCCCTCAAATACGAACAACTTTTCCTACTTTGCAACACCCGAATTCTTAACAATAACTTTTCACATYTTAACCATTATCGACATTCCCATTCACATGTTCGGCGCGTATCTTATTCAAAACTCTAAATTGTATGCGATCTGTGAAATGGAGCATGTTGAATTTACATTTTTGGAGTGTTCTTTTGGACTGGTTGGATGGTTTTCTATCCCGTCCTTTTATGCTCTATCCAGCTCTTGCTGGGTATACAGAGGGAGTTTTAGTGCGGCTTGGGATGTCTACAGCTGCGATGGCTTATCTATTTTTCACATTATTTTGTGGTAGGTGCAAAAAAGTCCGAAAAAATGCTCTGGCCTACCTTCTTTAAAACCATAAAGTATTGCAGCTGTTACAATATCCATATTTGGTATAATGGAAAATATATTCAACATTTTGTTTGCTGAAAACCATATCTGGAGGAAAATTCGATTTCCCTATTTTATGATCAATTGGATTTTTGTATTGACCCATTTTTTGTACCCAATTTTTAACACTCCAAATCAAAAACATGCTATTGAATTTCTGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGAATACCGGTCTCACTAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATCGCATACAATTTAGAGTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATGAATACCGGTCTCACTAAAATATCACAAGCACTGAACCAAAGAAAATGTTTTTTCCACATGACAAACAACCCCTCAGTAATACCTACAAAGCGGCACCAAGTTTCAAAAGCCCTCAAATACGAACAACTTTTCCTACTTTGCAACACCCGAATTCTTAACAATAACTTTTCACATCTTAACCATTATCGACATTCCCATTCACATGTTCGGCGCGTATCTTATTCAAAACTCTAAATTGTATGCGAT</canonical_amplicon>
		<polymorphic_amplicon>TATGAATACCGGTCTCACTAAAATATCACAAGCACTGAACCAAAGAAAATGTTTTTTCCACATGACAAACAACCCCTCAGTAATACCTACAAAGCGGCACCAAGTTTCAAAAGCCCTCAAATACGAACAACTTTTCCTACTTTGCAACACCCGAATTCTTAACAATAACTTTTCACATYTTAACCATTATCGACATTCCCATTCACATGTTCGGCGCGTATCTTATTCAAAACTCTAAATTGTATGCGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8302</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>46793</contig_pos>
        <strand>+</strand>
        <context>CCATCAAACT[A/G]CTGTTCAAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCAAATTTACCTGGAAGGTAGTCTAAAAATTTGTTTAACCATCAAACT</left_flank>
        <right_flank>CTGTTCAAGGAAAATATGTGTTGGAACTGCTCGAGTATCTTGTGAAATGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTATTTGTGTAAACCAAATCATTATAGAGCCTGCGATACTCCAAGGAACTTAGCTGACATTCTTCCAGTGCTTCAAAGTATGAAGTGTATGCCATCCTGAATTTTTTGAAAATTCTGAAAACAAATGACTTTTGCACCGATTCCAATTTTATAATATGATCCTTTAGGATTGGAGAAGTGACTATCGTTCCATATTCGAGTAAAGGGCGTATGTAAATTGTATAGCATTTTATTAAAACACTCCACGATGCGTTTTTTAGAATGGAAAAGAACATGTTGATCCTCTGATGTGATTTCCGAATAATCAATTTTTCAATTCTTCCCTTCGGGAACCTCCATACAGCAAGATTAGTCATTCAATTAGGAATAAAATCGAGAAAACCAATTATTATAAAATTCAATTTTTATAAATAGATAATATTAAAATTTACTGAACATAAAAGAAAAAAATCAAATTTACCTGGAAGGTAGTCTAAAAATTTGTTTAACCATCAAACTACTGTTCAAGGAAAATATGTGTTGGAACTGCTCGAGTATCTTGTGAAATGTAATGAAAATGTATAATCACCTGTTTTTCCTGATAATTCTGTCTTATTCAACACTTTTCCTTTCTAACAACTTTGATTTTATTCTCATTATTTCACCACTCCATGAAAGTCGACCTTCACCCTCAGTTGCCCGCTGTTTTAACAGTTCTTCTTGATATTTCTGGAACTGTAGACGTTTTCACAAACTCCCTAGTTGTGTATCTAGTCATTTTCAAAAGTCCCGCTCTCAAAAGGTTTCGCTATTATCTTTTATATTCTCAATTAAATACCGCGGTAGTAGATGTGTACTTGGCGTTTTTGATGAAACCAGTGCCTATTTTCCCTGCTATGGGAGGTTATACAACTGGGATACTTGCCACGTGGTTCGGAATCTCTTCTCATGTTCAGATGACAATTATGATTTTCAATATGGGAATGCAAGCGGTGGCAATATTTCAAACGTTTCTGGCGA</canonical>
            <polymorphic>TTTATTTGTGTAAACCAAATCATTATAGAGCCTGCGATACTCCAAGGAACTTAGCTGACATTCTTCCAGTGCTTCAAAGTATGAAGTGTATGCCATCCTGAATTTTTTGAAAATTCTGAAAACAAATGACTTTTGCACCGATTCCAATTTTATAATATGATCCTTTAGGATTGGAGAAGTGACTATCGTTCCATATTCGAGTAAAGGGCGTATGTAAATTGTATAGCATTTTATTAAAACACTCCACGATGCGTTTTTTAGAATGGAAAAGAACATGTTGATCCTCTGATGTGATTTCCGAATAATCAATTTTTCAATTCTTCCCTTCGGGAACCTCCATACAGCAAGATTAGTCATTCAATTAGGAATAAAATCGAGAAAACCAATTATTATAAAATTCAATTTTTATAAATAGATAATATTAAAATTTACTGAACATAAAAGAAAAAAATCAAATTTACCTGGAAGGTAGTCTAAAAATTTGTTTAACCATCAAACTRCTGTTCAAGGAAAATATGTGTTGGAACTGCTCGAGTATCTTGTGAAATGTAATGAAAATGTATAATCACCTGTTTTTCCTGATAATTCTGTCTTATTCAACACTTTTCCTTTCTAACAACTTTGATTTTATTCTCATTATTTCACCACTCCATGAAAGTCGACCTTCACCCTCAGTTGCCCGCTGTTTTAACAGTTCTTCTTGATATTTCTGGAACTGTAGACGTTTTCACAAACTCCCTAGTTGTGTATCTAGTCATTTTCAAAAGTCCCGCTCTCAAAAGGTTTCGCTATTATCTTTTATATTCTCAATTAAATACCGCGGTAGTAGATGTGTACTTGGCGTTTTTGATGAAACCAGTGCCTATTTTCCCTGCTATGGGAGGTTATACAACTGGGATACTTGCCACGTGGTTCGGAATCTCTTCTCATGTTCAGATGACAATTATGATTTTCAATATGGGAATGCAAGCGGTGGCAATATTTCAAACGTTTCTGGCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>502 283 191 24</canonical_bands>
                <polymorphic_bands>693 283 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAAGATTAGTCATTCAATTAGG</pcr_primer_p1>
		<pcr_primer_p2>AGACAGAATTATCAGGAAAAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCAAGATTAGTCATTCAATTAGGAATAAAATCGAGAAAACCAATTATTATAAAATTCAATTTTTATAAATAGATAATATTAAAATTTACTGAACATAAAAGAAAAAAATCAAATTTACCTGGAAGGTAGTCTAAAAATTTGTTTAACCATCAAACTACTGTTCAAGGAAAATATGTGTTGGAACTGCTCGAGTATCTTGTGAAATGTAATGAAAATGTATAATCACCTGTTTTTCCTGATAATTCTGTCT</canonical_amplicon>
		<polymorphic_amplicon>GCAAGATTAGTCATTCAATTAGGAATAAAATCGAGAAAACCAATTATTATAAAATTCAATTTTTATAAATAGATAATATTAAAATTTACTGAACATAAAAGAAAAAAATCAAATTTACCTGGAAGGTAGTCTAAAAATTTGTTTAACCATCAAACTRCTGTTCAAGGAAAATATGTGTTGGAACTGCTCGAGTATCTTGTGAAATGTAATGAAAATGTATAATCACCTGTTTTTCCTGATAATTCTGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8303</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>46856</contig_pos>
        <strand>+</strand>
        <context>TGAAAATGTA[A/T]AATCACCTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATATGTGTTGGAACTGCTCGAGTATCTTGTGAAATGTAATGAAAATGTA</left_flank>
        <right_flank>AATCACCTGTTTTTCCTGATAATTCTGTCTTATTCAACACTTTTCCTTTC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCAGTGCTTCAAAGTATGAAGTGTATGCCATCCTGAATTTTTTGAAAATTCTGAAAACAAATGACTTTTGCACCGATTCCAATTTTATAATATGATCCTTTAGGATTGGAGAAGTGACTATCGTTCCATATTCGAGTAAAGGGCGTATGTAAATTGTATAGCATTTTATTAAAACACTCCACGATGCGTTTTTTAGAATGGAAAAGAACATGTTGATCCTCTGATGTGATTTCCGAATAATCAATTTTTCAATTCTTCCCTTCGGGAACCTCCATACAGCAAGATTAGTCATTCAATTAGGAATAAAATCGAGAAAACCAATTATTATAAAATTCAATTTTTATAAATAGATAATATTAAAATTTACTGAACATAAAAGAAAAAAATCAAATTTACCTGGAAGGTAGTCTAAAAATTTGTTTAACCATCAAACTACTGTTCAAGGAAAATATGTGTTGGAACTGCTCGAGTATCTTGTGAAATGTAATGAAAATGTATAATCACCTGTTTTTCCTGATAATTCTGTCTTATTCAACACTTTTCCTTTCTAACAACTTTGATTTTATTCTCATTATTTCACCACTCCATGAAAGTCGACCTTCACCCTCAGTTGCCCGCTGTTTTAACAGTTCTTCTTGATATTTCTGGAACTGTAGACGTTTTCACAAACTCCCTAGTTGTGTATCTAGTCATTTTCAAAAGTCCCGCTCTCAAAAGGTTTCGCTATTATCTTTTATATTCTCAATTAAATACCGCGGTAGTAGATGTGTACTTGGCGTTTTTGATGAAACCAGTGCCTATTTTCCCTGCTATGGGAGGTTATACAACTGGGATACTTGCCACGTGGTTCGGAATCTCTTCTCATGTTCAGATGACAATTATGATTTTCAATATGGGAATGCAAGCGGTGGCAATATTTCAAACGTTTCTGGCGAAACATCAAGCGATTGTAAGCATTGATAGAAGAAGAGTTTTGAGGAAATTGTTCTACTGGCGAC</canonical>
            <polymorphic>TTCCAGTGCTTCAAAGTATGAAGTGTATGCCATCCTGAATTTTTTGAAAATTCTGAAAACAAATGACTTTTGCACCGATTCCAATTTTATAATATGATCCTTTAGGATTGGAGAAGTGACTATCGTTCCATATTCGAGTAAAGGGCGTATGTAAATTGTATAGCATTTTATTAAAACACTCCACGATGCGTTTTTTAGAATGGAAAAGAACATGTTGATCCTCTGATGTGATTTCCGAATAATCAATTTTTCAATTCTTCCCTTCGGGAACCTCCATACAGCAAGATTAGTCATTCAATTAGGAATAAAATCGAGAAAACCAATTATTATAAAATTCAATTTTTATAAATAGATAATATTAAAATTTACTGAACATAAAAGAAAAAAATCAAATTTACCTGGAAGGTAGTCTAAAAATTTGTTTAACCATCAAACTACTGTTCAAGGAAAATATGTGTTGGAACTGCTCGAGTATCTTGTGAAATGTAATGAAAATGTAWAATCACCTGTTTTTCCTGATAATTCTGTCTTATTCAACACTTTTCCTTTCTAACAACTTTGATTTTATTCTCATTATTTCACCACTCCATGAAAGTCGACCTTCACCCTCAGTTGCCCGCTGTTTTAACAGTTCTTCTTGATATTTCTGGAACTGTAGACGTTTTCACAAACTCCCTAGTTGTGTATCTAGTCATTTTCAAAAGTCCCGCTCTCAAAAGGTTTCGCTATTATCTTTTATATTCTCAATTAAATACCGCGGTAGTAGATGTGTACTTGGCGTTTTTGATGAAACCAGTGCCTATTTTCCCTGCTATGGGAGGTTATACAACTGGGATACTTGCCACGTGGTTCGGAATCTCTTCTCATGTTCAGATGACAATTATGATTTTCAATATGGGAATGCAAGCGGTGGCAATATTTCAAACGTTTCTGGCGAAACATCAAGCGATTGTAAGCATTGATAGAAGAAGAGTTTTGAGGAAATTGTTCTACTGGCGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAAAAATTTGTTTAACCATCAA</pcr_primer_p1>
		<pcr_primer_p2>CAGTTCCAGAAATATCAAGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCTAAAAATTTGTTTAACCATCAAACTACTGTTCAAGGAAAATATGTGTTGGAACTGCTCGAGTATCTTGTGAAATGTAATGAAAATGTATAATCACCTGTTTTTCCTGATAATTCTGTCTTATTCAACACTTTTCCTTTCTAACAACTTTGATTTTATTCTCATTATTTCACCACTCCATGAAAGTCGACCTTCACCCTCAGTTGCCCGCTGTTTTAACAGTTCTTCTTGATATTTCTGGAACTG</canonical_amplicon>
		<polymorphic_amplicon>TCTAAAAATTTGTTTAACCATCAAACTACTGTTCAAGGAAAATATGTGTTGGAACTGCTCGAGTATCTTGTGAAATGTAATGAAAATGTAWAATCACCTGTTTTTCCTGATAATTCTGTCTTATTCAACACTTTTCCTTTCTAACAACTTTGATTTTATTCTCATTATTTCACCACTCCATGAAAGTCGACCTTCACCCTCAGTTGCCCGCTGTTTTAACAGTTCTTCTTGATATTTCTGGAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8304</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>46900</contig_pos>
        <strand>+</strand>
        <context>TCAACACTTT[C/T]CCTTTCTAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGTATAATCACCTGTTTTTCCTGATAATTCTGTCTTATTCAACACTTT</left_flank>
        <right_flank>CCTTTCTAACAACTTTGATTTTATTCTCATTATTTCACCACTCCATGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAATTCTGAAAACAAATGACTTTTGCACCGATTCCAATTTTATAATATGATCCTTTAGGATTGGAGAAGTGACTATCGTTCCATATTCGAGTAAAGGGCGTATGTAAATTGTATAGCATTTTATTAAAACACTCCACGATGCGTTTTTTAGAATGGAAAAGAACATGTTGATCCTCTGATGTGATTTCCGAATAATCAATTTTTCAATTCTTCCCTTCGGGAACCTCCATACAGCAAGATTAGTCATTCAATTAGGAATAAAATCGAGAAAACCAATTATTATAAAATTCAATTTTTATAAATAGATAATATTAAAATTTACTGAACATAAAAGAAAAAAATCAAATTTACCTGGAAGGTAGTCTAAAAATTTGTTTAACCATCAAACTACTGTTCAAGGAAAATATGTGTTGGAACTGCTCGAGTATCTTGTGAAATGTAATGAAAATGTATAATCACCTGTTTTTCCTGATAATTCTGTCTTATTCAACACTTTTCCTTTCTAACAACTTTGATTTTATTCTCATTATTTCACCACTCCATGAAAGTCGACCTTCACCCTCAGTTGCCCGCTGTTTTAACAGTTCTTCTTGATATTTCTGGAACTGTAGACGTTTTCACAAACTCCCTAGTTGTGTATCTAGTCATTTTCAAAAGTCCCGCTCTCAAAAGGTTTCGCTATTATCTTTTATATTCTCAATTAAATACCGCGGTAGTAGATGTGTACTTGGCGTTTTTGATGAAACCAGTGCCTATTTTCCCTGCTATGGGAGGTTATACAACTGGGATACTTGCCACGTGGTTCGGAATCTCTTCTCATGTTCAGATGACAATTATGATTTTCAATATGGGAATGCAAGCGGTGGCAATATTTCAAACGTTTCTGGCGAAACATCAAGCGATTGTAAGCATTGATAGAAGAAGAGTTTTGAGGAAATTGTTCTACTGGCGACTGGTGGGAATTGGTTTCTTTCTCACAATAGTGACAATTTGGTTG</canonical>
            <polymorphic>TGAAAATTCTGAAAACAAATGACTTTTGCACCGATTCCAATTTTATAATATGATCCTTTAGGATTGGAGAAGTGACTATCGTTCCATATTCGAGTAAAGGGCGTATGTAAATTGTATAGCATTTTATTAAAACACTCCACGATGCGTTTTTTAGAATGGAAAAGAACATGTTGATCCTCTGATGTGATTTCCGAATAATCAATTTTTCAATTCTTCCCTTCGGGAACCTCCATACAGCAAGATTAGTCATTCAATTAGGAATAAAATCGAGAAAACCAATTATTATAAAATTCAATTTTTATAAATAGATAATATTAAAATTTACTGAACATAAAAGAAAAAAATCAAATTTACCTGGAAGGTAGTCTAAAAATTTGTTTAACCATCAAACTACTGTTCAAGGAAAATATGTGTTGGAACTGCTCGAGTATCTTGTGAAATGTAATGAAAATGTATAATCACCTGTTTTTCCTGATAATTCTGTCTTATTCAACACTTTYCCTTTCTAACAACTTTGATTTTATTCTCATTATTTCACCACTCCATGAAAGTCGACCTTCACCCTCAGTTGCCCGCTGTTTTAACAGTTCTTCTTGATATTTCTGGAACTGTAGACGTTTTCACAAACTCCCTAGTTGTGTATCTAGTCATTTTCAAAAGTCCCGCTCTCAAAAGGTTTCGCTATTATCTTTTATATTCTCAATTAAATACCGCGGTAGTAGATGTGTACTTGGCGTTTTTGATGAAACCAGTGCCTATTTTCCCTGCTATGGGAGGTTATACAACTGGGATACTTGCCACGTGGTTCGGAATCTCTTCTCATGTTCAGATGACAATTATGATTTTCAATATGGGAATGCAAGCGGTGGCAATATTTCAAACGTTTCTGGCGAAACATCAAGCGATTGTAAGCATTGATAGAAGAAGAGTTTTGAGGAAATTGTTCTACTGGCGACTGGTGGGAATTGGTTTCTTTCTCACAATAGTGACAATTTGGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAAAAATTTGTTTAACCATCAA</pcr_primer_p1>
		<pcr_primer_p2>CAGTTCCAGAAATATCAAGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCTAAAAATTTGTTTAACCATCAAACTACTGTTCAAGGAAAATATGTGTTGGAACTGCTCGAGTATCTTGTGAAATGTAATGAAAATGTATAATCACCTGTTTTTCCTGATAATTCTGTCTTATTCAACACTTTTCCTTTCTAACAACTTTGATTTTATTCTCATTATTTCACCACTCCATGAAAGTCGACCTTCACCCTCAGTTGCCCGCTGTTTTAACAGTTCTTCTTGATATTTCTGGAACTG</canonical_amplicon>
		<polymorphic_amplicon>TCTAAAAATTTGTTTAACCATCAAACTACTGTTCAAGGAAAATATGTGTTGGAACTGCTCGAGTATCTTGTGAAATGTAATGAAAATGTATAATCACCTGTTTTTCCTGATAATTCTGTCTTATTCAACACTTTYCCTTTCTAACAACTTTGATTTTATTCTCATTATTTCACCACTCCATGAAAGTCGACCTTCACCCTCAGTTGCCCGCTGTTTTAACAGTTCTTCTTGATATTTCTGGAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8305</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>46969</contig_pos>
        <strand>+</strand>
        <context>TCACCCTCAG[C/T]TGCCCGCTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTATTCTCATTATTTCACCACTCCATGAAAGTCGACCTTCACCCTCAG</left_flank>
        <right_flank>TGCCCGCTGTTTTAACAGTTCTTCTTGATATTTCTGGAACTGTAGACGTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTGACTATCGTTCCATATTCGAGTAAAGGGCGTATGTAAATTGTATAGCATTTTATTAAAACACTCCACGATGCGTTTTTTAGAATGGAAAAGAACATGTTGATCCTCTGATGTGATTTCCGAATAATCAATTTTTCAATTCTTCCCTTCGGGAACCTCCATACAGCAAGATTAGTCATTCAATTAGGAATAAAATCGAGAAAACCAATTATTATAAAATTCAATTTTTATAAATAGATAATATTAAAATTTACTGAACATAAAAGAAAAAAATCAAATTTACCTGGAAGGTAGTCTAAAAATTTGTTTAACCATCAAACTACTGTTCAAGGAAAATATGTGTTGGAACTGCTCGAGTATCTTGTGAAATGTAATGAAAATGTATAATCACCTGTTTTTCCTGATAATTCTGTCTTATTCAACACTTTTCCTTTCTAACAACTTTGATTTTATTCTCATTATTTCACCACTCCATGAAAGTCGACCTTCACCCTCAGTTGCCCGCTGTTTTAACAGTTCTTCTTGATATTTCTGGAACTGTAGACGTTTTCACAAACTCCCTAGTTGTGTATCTAGTCATTTTCAAAAGTCCCGCTCTCAAAAGGTTTCGCTATTATCTTTTATATTCTCAATTAAATACCGCGGTAGTAGATGTGTACTTGGCGTTTTTGATGAAACCAGTGCCTATTTTCCCTGCTATGGGAGGTTATACAACTGGGATACTTGCCACGTGGTTCGGAATCTCTTCTCATGTTCAGATGACAATTATGATTTTCAATATGGGAATGCAAGCGGTGGCAATATTTCAAACGTTTCTGGCGAAACATCAAGCGATTGTAAGCATTGATAGAAGAAGAGTTTTGAGGAAATTGTTCTACTGGCGACTGGTGGGAATTGGTTTCTTTCTCACAATAGTGACAATTTGGTTGTATTATTTGGGCGATATCTCCAAGGAACAGCAAATTGAGTATATCAGAAAGGTTTGATTTTTCGAATTA</canonical>
            <polymorphic>AAGTGACTATCGTTCCATATTCGAGTAAAGGGCGTATGTAAATTGTATAGCATTTTATTAAAACACTCCACGATGCGTTTTTTAGAATGGAAAAGAACATGTTGATCCTCTGATGTGATTTCCGAATAATCAATTTTTCAATTCTTCCCTTCGGGAACCTCCATACAGCAAGATTAGTCATTCAATTAGGAATAAAATCGAGAAAACCAATTATTATAAAATTCAATTTTTATAAATAGATAATATTAAAATTTACTGAACATAAAAGAAAAAAATCAAATTTACCTGGAAGGTAGTCTAAAAATTTGTTTAACCATCAAACTACTGTTCAAGGAAAATATGTGTTGGAACTGCTCGAGTATCTTGTGAAATGTAATGAAAATGTATAATCACCTGTTTTTCCTGATAATTCTGTCTTATTCAACACTTTTCCTTTCTAACAACTTTGATTTTATTCTCATTATTTCACCACTCCATGAAAGTCGACCTTCACCCTCAGYTGCCCGCTGTTTTAACAGTTCTTCTTGATATTTCTGGAACTGTAGACGTTTTCACAAACTCCCTAGTTGTGTATCTAGTCATTTTCAAAAGTCCCGCTCTCAAAAGGTTTCGCTATTATCTTTTATATTCTCAATTAAATACCGCGGTAGTAGATGTGTACTTGGCGTTTTTGATGAAACCAGTGCCTATTTTCCCTGCTATGGGAGGTTATACAACTGGGATACTTGCCACGTGGTTCGGAATCTCTTCTCATGTTCAGATGACAATTATGATTTTCAATATGGGAATGCAAGCGGTGGCAATATTTCAAACGTTTCTGGCGAAACATCAAGCGATTGTAAGCATTGATAGAAGAAGAGTTTTGAGGAAATTGTTCTACTGGCGACTGGTGGGAATTGGTTTCTTTCTCACAATAGTGACAATTTGGTTGTATTATTTGGGCGATATCTCCAAGGAACAGCAAATTGAGTATATCAGAAAGGTTTGATTTTTCGAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTCAAGGAAAATATGTGTTG</pcr_primer_p1>
		<pcr_primer_p2>ACAACTAGGGAGTTTGTGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TGTTCAAGGAAAATATGTGTTGGAACTGCTCGAGTATCTTGTGAAATGTAATGAAAATGTATAATCACCTGTTTTTCCTGATAATTCTGTCTTATTCAACACTTTTCCTTTCTAACAACTTTGATTTTATTCTCATTATTTCACCACTCCATGAAAGTCGACCTTCACCCTCAGTTGCCCGCTGTTTTAACAGTTCTTCTTGATATTTCTGGAACTGTAGACGTTTTCACAAACTCCCTAGTTGT</canonical_amplicon>
		<polymorphic_amplicon>TGTTCAAGGAAAATATGTGTTGGAACTGCTCGAGTATCTTGTGAAATGTAATGAAAATGTATAATCACCTGTTTTTCCTGATAATTCTGTCTTATTCAACACTTTTCCTTTCTAACAACTTTGATTTTATTCTCATTATTTCACCACTCCATGAAAGTCGACCTTCACCCTCAGYTGCCCGCTGTTTTAACAGTTCTTCTTGATATTTCTGGAACTGTAGACGTTTTCACAAACTCCCTAGTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8306</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>47076</contig_pos>
        <strand>+</strand>
        <context>CTCTCAAAAG[G/T]TTTCGCTATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACTCCCTAGTTGTGTATCTAGTCATTTTCAAAAGTCCCGCTCTCAAAAG</left_flank>
        <right_flank>TTTCGCTATTATCTTTTATATTCTCAATTAAATACCGCGGTAGTAGATGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTGATGTGATTTCCGAATAATCAATTTTTCAATTCTTCCCTTCGGGAACCTCCATACAGCAAGATTAGTCATTCAATTAGGAATAAAATCGAGAAAACCAATTATTATAAAATTCAATTTTTATAAATAGATAATATTAAAATTTACTGAACATAAAAGAAAAAAATCAAATTTACCTGGAAGGTAGTCTAAAAATTTGTTTAACCATCAAACTACTGTTCAAGGAAAATATGTGTTGGAACTGCTCGAGTATCTTGTGAAATGTAATGAAAATGTATAATCACCTGTTTTTCCTGATAATTCTGTCTTATTCAACACTTTTCCTTTCTAACAACTTTGATTTTATTCTCATTATTTCACCACTCCATGAAAGTCGACCTTCACCCTCAGTTGCCCGCTGTTTTAACAGTTCTTCTTGATATTTCTGGAACTGTAGACGTTTTCACAAACTCCCTAGTTGTGTATCTAGTCATTTTCAAAAGTCCCGCTCTCAAAAGGTTTCGCTATTATCTTTTATATTCTCAATTAAATACCGCGGTAGTAGATGTGTACTTGGCGTTTTTGATGAAACCAGTGCCTATTTTCCCTGCTATGGGAGGTTATACAACTGGGATACTTGCCACGTGGTTCGGAATCTCTTCTCATGTTCAGATGACAATTATGATTTTCAATATGGGAATGCAAGCGGTGGCAATATTTCAAACGTTTCTGGCGAAACATCAAGCGATTGTAAGCATTGATAGAAGAAGAGTTTTGAGGAAATTGTTCTACTGGCGACTGGTGGGAATTGGTTTCTTTCTCACAATAGTGACAATTTGGTTGTATTATTTGGGCGATATCTCCAAGGAACAGCAAATTGAGTATATCAGAAAGGTTTGATTTTTCGAATTAAGGCTAACAACTGAAGAATGATTCCAGAATATTCCCAACTTGGAACAAATTCTAATGTCCAATCCCAGTCTCGACATCTATGATTGAAATGCGAACCCTCTAATCTT</canonical>
            <polymorphic>CTCTGATGTGATTTCCGAATAATCAATTTTTCAATTCTTCCCTTCGGGAACCTCCATACAGCAAGATTAGTCATTCAATTAGGAATAAAATCGAGAAAACCAATTATTATAAAATTCAATTTTTATAAATAGATAATATTAAAATTTACTGAACATAAAAGAAAAAAATCAAATTTACCTGGAAGGTAGTCTAAAAATTTGTTTAACCATCAAACTACTGTTCAAGGAAAATATGTGTTGGAACTGCTCGAGTATCTTGTGAAATGTAATGAAAATGTATAATCACCTGTTTTTCCTGATAATTCTGTCTTATTCAACACTTTTCCTTTCTAACAACTTTGATTTTATTCTCATTATTTCACCACTCCATGAAAGTCGACCTTCACCCTCAGTTGCCCGCTGTTTTAACAGTTCTTCTTGATATTTCTGGAACTGTAGACGTTTTCACAAACTCCCTAGTTGTGTATCTAGTCATTTTCAAAAGTCCCGCTCTCAAAAGKTTTCGCTATTATCTTTTATATTCTCAATTAAATACCGCGGTAGTAGATGTGTACTTGGCGTTTTTGATGAAACCAGTGCCTATTTTCCCTGCTATGGGAGGTTATACAACTGGGATACTTGCCACGTGGTTCGGAATCTCTTCTCATGTTCAGATGACAATTATGATTTTCAATATGGGAATGCAAGCGGTGGCAATATTTCAAACGTTTCTGGCGAAACATCAAGCGATTGTAAGCATTGATAGAAGAAGAGTTTTGAGGAAATTGTTCTACTGGCGACTGGTGGGAATTGGTTTCTTTCTCACAATAGTGACAATTTGGTTGTATTATTTGGGCGATATCTCCAAGGAACAGCAAATTGAGTATATCAGAAAGGTTTGATTTTTCGAATTAAGGCTAACAACTGAAGAATGATTCCAGAATATTCCCAACTTGGAACAAATTCTAATGTCCAATCCCAGTCTCGACATCTATGATTGAAATGCGAACCCTCTAATCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTCTTGATATTTCTGGAACTG</pcr_primer_p1>
		<pcr_primer_p2>GTCATCTGAACATGAGAAGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCTTCTTGATATTTCTGGAACTGTAGACGTTTTCACAAACTCCCTAGTTGTGTATCTAGTCATTTTCAAAAGTCCCGCTCTCAAAAGGTTTCGCTATTATCTTTTATATTCTCAATTAAATACCGCGGTAGTAGATGTGTACTTGGCGTTTTTGATGAAACCAGTGCCTATTTTCCCTGCTATGGGAGGTTATACAACTGGGATACTTGCCACGTGGTTCGGAATCTCTTCTCATGTTCAGATGAC</canonical_amplicon>
		<polymorphic_amplicon>TCTTCTTGATATTTCTGGAACTGTAGACGTTTTCACAAACTCCCTAGTTGTGTATCTAGTCATTTTCAAAAGTCCCGCTCTCAAAAGKTTTCGCTATTATCTTTTATATTCTCAATTAAATACCGCGGTAGTAGATGTGTACTTGGCGTTTTTGATGAAACCAGTGCCTATTTTCCCTGCTATGGGAGGTTATACAACTGGGATACTTGCCACGTGGTTCGGAATCTCTTCTCATGTTCAGATGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8307</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>54067</contig_pos>
        <strand></strand>
        <context>TWGTGTCCTA[C/T]CCTACATATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTA</left_flank>
        <right_flank>CCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCAT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTTCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAAGGCGATGATTGGGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAAAAAAAGCGGTCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCAAAAAACCCCCGTAAAATCTCCTGTCCCCCCACCTTTAATTAATTTTTTTGCTAGCGTGATTGGGTACCTGAGTGGTCTGACACTGATTGTTTCGGTTGTCACAAGTAGCAGACGTCGAATATCTGAAATGGAGGAGCTTTTGAATTCTCAAAGCGACTTTTGAAGCTTACCGTAATGGATAGTCGCCATGCCAACCGTTACATTGATAGCAGTTGAGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACATTTTTGGAAAATTCGAATTTCTGTTTGAATCAGAGAGTAAAAAATAAATCTATGAAAAAATACTTAATTCGACAAGACAAGGTCTTCAACGTAATAAATTATTTCAATTGCGCTAAATTATTAAGCCACGGGTCGCAGCTACCGCTGCTCTTGAGGCCTAATTATCCTGGGCTCCTCTGTAAGATACTAAAAATTTGTAAGGTTTAAAGCTAACTTTAGAAGGTCCTTCTATTACAGGTGTCGCGGTAAACTGTCATAATCAAGTAAGACCACAACACCCTTATTATCAAAC</canonical>
            <polymorphic>GGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTTCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAAGGCGATGATTGGGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAAAAAAAGCGGTCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCAAAAAACCCCCGTAAAATCTCCTGTCCCCCCACCTTTAATTAATTTTTTTGCTAGCGTGATTGGGTACCTGAGTGGTCTGACACTGATTGTTTCGGTTGTCACAAGTAGCAGACGTCGAATATCTGAAATGGAGGAGCTTTTGAATTCTCAAAGCGACTTTTGAAGCTTACCGTAATGGATAGTCGCCATGCCAACCGTTACATTGATAGCAGTTGAGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTAYCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACATTTTTGGAAAATTCGAATTTCTGTTTGAATCAGAGAGTAAAAAATAAATCTATGAAAAAATACTTAATTCGACAAGACAAGGTCTTCAACGTAATAAATTATTTCAATTGCGCTAAATTATTAAGCCACGGGTCGCAGCTACCGCTGCTCTTGAGGCCTAATTATCCTGGGCTCCTCTGTAAGATACTAAAAATTTGTAAGGTTTAAAGCTAACTTTAGAAGGTCCTTCTATTACAGGTGTCGCGGTAAACTGTCATAATCAAGTAAGACCACAACACCCTTATTATCAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGCATAGGTATCTGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGTGTTCAGGAAAATACTCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>AGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACA</canonical_amplicon>
		<polymorphic_amplicon>AGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTAYCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8308</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>54058</contig_pos>
        <strand></strand>
        <context>CTGAAAGCTT[A/T]GTGTCCTAYC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGCAGTTGAGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTT</left_flank>
        <right_flank>GTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTTCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAAGGCGATGATTGGGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAAAAAAAGCGGTCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCAAAAAACCCCCGTAAAATCTCCTGTCCCCCCACCTTTAATTAATTTTTTTGCTAGCGTGATTGGGTACCTGAGTGGTCTGACACTGATTGTTTCGGTTGTCACAAGTAGCAGACGTCGAATATCTGAAATGGAGGAGCTTTTGAATTCTCAAAGCGACTTTTGAAGCTTACCGTAATGGATAGTCGCCATGCCAACCGTTACATTGATAGCAGTTGAGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACATTTTTGGAAAATTCGAATTTCTGTTTGAATCAGAGAGTAAAAAATAAATCTATGAAAAAATACTTAATTCGACAAGACAAGGTCTTCAACGTAATAAATTATTTCAATTGCGCTAAATTATTAAGCCACGGGTCGCAGCTACCGCTGCTCTTGAGGCCTAATTATCCTGGGCTCCTCTGTAAGATACTAAAAATTTGTAAGGTTTAAAGCTAACTTTAGAAGGTCCTTCTATTACAGGTGTCGCGGTAAACTGTCATAATCAAGTAAGACCACAACACCCTTA</canonical>
            <polymorphic>TTAATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTTCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAAGGCGATGATTGGGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAAAAAAAGCGGTCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCAAAAAACCCCCGTAAAATCTCCTGTCCCCCCACCTTTAATTAATTTTTTTGCTAGCGTGATTGGGTACCTGAGTGGTCTGACACTGATTGTTTCGGTTGTCACAAGTAGCAGACGTCGAATATCTGAAATGGAGGAGCTTTTGAATTCTCAAAGCGACTTTTGAAGCTTACCGTAATGGATAGTCGCCATGCCAACCGTTACATTGATAGCAGTTGAGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTWGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACATTTTTGGAAAATTCGAATTTCTGTTTGAATCAGAGAGTAAAAAATAAATCTATGAAAAAATACTTAATTCGACAAGACAAGGTCTTCAACGTAATAAATTATTTCAATTGCGCTAAATTATTAAGCCACGGGTCGCAGCTACCGCTGCTCTTGAGGCCTAATTATCCTGGGCTCCTCTGTAAGATACTAAAAATTTGTAAGGTTTAAAGCTAACTTTAGAAGGTCCTTCTATTACAGGTGTCGCGGTAAACTGTCATAATCAAGTAAGACCACAACACCCTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 192 187 118</canonical_bands>
                <polymorphic_bands>690 192 118</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATAGCAGTTGAGAGCATAGGTA</pcr_primer_p1>
		<pcr_primer_p2>TGTGTTCAGGAAAATACTCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>GATAGCAGTTGAGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACA</canonical_amplicon>
		<polymorphic_amplicon>GATAGCAGTTGAGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTWGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8309</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>54325</contig_pos>
        <strand></strand>
        <context>AAAAAKAAAT[C/A]TATGAAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATTTTTGGAAAATTCGAATTTCTGTTTGAATCAGAGAGTAAAAAATAAAT</left_flank>
        <right_flank>TATGAAAAAATACTTAATTCGACAAGACAAGGTCTTCAACGTAATAAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCCCACCTTTAATTAATTTTTTTGCTAGCGTGATTGGGTACCTGAGTGGTCTGACACTGATTGTTTCGGTTGTCACAAGTAGCAGACGTCGAATATCTGAAATGGAGGAGCTTTTGAATTCTCAAAGCGACTTTTGAAGCTTACCGTAATGGATAGTCGCCATGCCAACCGTTACATTGATAGCAGTTGAGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACATTTTTGGAAAATTCGAATTTCTGTTTGAATCAGAGAGTAAAAAATAAATCTATGAAAAAATACTTAATTCGACAAGACAAGGTCTTCAACGTAATAAATTATTTCAATTGCGCTAAATTATTAAGCCACGGGTCGCAGCTACCGCTGCTCTTGAGGCCTAATTATCCTGGGCTCCTCTGTAAGATACTAAAAATTTGTAAGGTTTAAAGCTAACTTTAGAAGGTCCTTCTATTACAGGTGTCGCGGTAAACTGTCATAATCAAGTAAGACCACAACACCCTTATTATCAAACTCAAGCTTATAGACAATTCAAAAAAAAACTAACCTATCGAACCAAAAACAAGTAGAATCCAAATTTCGAGCTGCATCGAAAACGTAAAATCTTGAGGATGAGGTGTTTCGAGAAGGGCAAAAAAGAGAGAATAAAATAACAAGGCGGAAAAAGCGCGCGCTTCGTCTCCAACCTGGTGGTGGTCTTCGTTGAGATGGAGAACAATAGAATTCGGAAATATGAAACGTATTGTTGCCAAAGAAGAGAGAGGTCCCTTTT</canonical>
            <polymorphic>CCCCCACCTTTAATTAATTTTTTTGCTAGCGTGATTGGGTACCTGAGTGGTCTGACACTGATTGTTTCGGTTGTCACAAGTAGCAGACGTCGAATATCTGAAATGGAGGAGCTTTTGAATTCTCAAAGCGACTTTTGAAGCTTACCGTAATGGATAGTCGCCATGCCAACCGTTACATTGATAGCAGTTGAGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACATTTTTGGAAAATTCGAATTTCTGTTTGAATCAGAGAGTAAAAAATAAATMTATGAAAAAATACTTAATTCGACAAGACAAGGTCTTCAACGTAATAAATTATTTCAATTGCGCTAAATTATTAAGCCACGGGTCGCAGCTACCGCTGCTCTTGAGGCCTAATTATCCTGGGCTCCTCTGTAAGATACTAAAAATTTGTAAGGTTTAAAGCTAACTTTAGAAGGTCCTTCTATTACAGGTGTCGCGGTAAACTGTCATAATCAAGTAAGACCACAACACCCTTATTATCAAACTCAAGCTTATAGACAATTCAAAAAAAAACTAACCTATCGAACCAAAAACAAGTAGAATCCAAATTTCGAGCTGCATCGAAAACGTAAAATCTTGAGGATGAGGTGTTTCGAGAAGGGCAAAAAAGAGAGAATAAAATAACAAGGCGGAAAAAGCGCGCGCTTCGTCTCCAACCTGGTGGTGGTCTTCGTTGAGATGGAGAACAATAGAATTCGGAAATATGAAACGTATTGTTGCCAAAGAAGAGAGAGGTCCCTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATTTTCCTGAACACATTTTTG</pcr_primer_p1>
		<pcr_primer_p2>CGCGACACCTGTAATAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>GTATTTTCCTGAACACATTTTTGGAAAATTCGAATTTCTGTTTGAATCAGAGAGTAAAAAATAAATCTATGAAAAAATACTTAATTCGACAAGACAAGGTCTTCAACGTAATAAATTATTTCAATTGCGCTAAATTATTAAGCCACGGGTCGCAGCTACCGCTGCTCTTGAGGCCTAATTATCCTGGGCTCCTCTGTAAGATACTAAAAATTTGTAAGGTTTAAAGCTAACTTTAGAAGGTCCTTCTATTACAGGTGTCGCG</canonical_amplicon>
		<polymorphic_amplicon>GTATTTTCCTGAACACATTTTTGGAAAATTCGAATTTCTGTTTGAATCAGAGAGTAAAAAATAAATMTATGAAAAAATACTTAATTCGACAAGACAAGGTCTTCAACGTAATAAATTATTTCAATTGCGCTAAATTATTAAGCCACGGGTCGCAGCTACCGCTGCTCTTGAGGCCTAATTATCCTGGGCTCCTCTGTAAGATACTAAAAATTTGTAAGGTTTAAAGCTAACTTTAGAAGGTCCTTCTATTACAGGTGTCGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8310</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>54320</contig_pos>
        <strand></strand>
        <context>GAGTAAAAAA[T/G]AAATMTATGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AACACATTTTTGGAAAATTCGAATTTCTGTTTGAATCAGAGAGTAAAAAA</left_flank>
        <right_flank>AAATCTATGAAAAAATACTTAATTCGACAAGACAAGGTCTTCAACGTAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTCCCCCCACCTTTAATTAATTTTTTTGCTAGCGTGATTGGGTACCTGAGTGGTCTGACACTGATTGTTTCGGTTGTCACAAGTAGCAGACGTCGAATATCTGAAATGGAGGAGCTTTTGAATTCTCAAAGCGACTTTTGAAGCTTACCGTAATGGATAGTCGCCATGCCAACCGTTACATTGATAGCAGTTGAGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACATTTTTGGAAAATTCGAATTTCTGTTTGAATCAGAGAGTAAAAAATAAATCTATGAAAAAATACTTAATTCGACAAGACAAGGTCTTCAACGTAATAAATTATTTCAATTGCGCTAAATTATTAAGCCACGGGTCGCAGCTACCGCTGCTCTTGAGGCCTAATTATCCTGGGCTCCTCTGTAAGATACTAAAAATTTGTAAGGTTTAAAGCTAACTTTAGAAGGTCCTTCTATTACAGGTGTCGCGGTAAACTGTCATAATCAAGTAAGACCACAACACCCTTATTATCAAACTCAAGCTTATAGACAATTCAAAAAAAAACTAACCTATCGAACCAAAAACAAGTAGAATCCAAATTTCGAGCTGCATCGAAAACGTAAAATCTTGAGGATGAGGTGTTTCGAGAAGGGCAAAAAAGAGAGAATAAAATAACAAGGCGGAAAAAGCGCGCGCTTCGTCTCCAACCTGGTGGTGGTCTTCGTTGAGATGGAGAACAATAGAATTCGGAAATATGAAACGTATTGTTGCCAAAGAAGAGAGAGGTCC</canonical>
            <polymorphic>CTGTCCCCCCACCTTTAATTAATTTTTTTGCTAGCGTGATTGGGTACCTGAGTGGTCTGACACTGATTGTTTCGGTTGTCACAAGTAGCAGACGTCGAATATCTGAAATGGAGGAGCTTTTGAATTCTCAAAGCGACTTTTGAAGCTTACCGTAATGGATAGTCGCCATGCCAACCGTTACATTGATAGCAGTTGAGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACATTTTTGGAAAATTCGAATTTCTGTTTGAATCAGAGAGTAAAAAAKAAATCTATGAAAAAATACTTAATTCGACAAGACAAGGTCTTCAACGTAATAAATTATTTCAATTGCGCTAAATTATTAAGCCACGGGTCGCAGCTACCGCTGCTCTTGAGGCCTAATTATCCTGGGCTCCTCTGTAAGATACTAAAAATTTGTAAGGTTTAAAGCTAACTTTAGAAGGTCCTTCTATTACAGGTGTCGCGGTAAACTGTCATAATCAAGTAAGACCACAACACCCTTATTATCAAACTCAAGCTTATAGACAATTCAAAAAAAAACTAACCTATCGAACCAAAAACAAGTAGAATCCAAATTTCGAGCTGCATCGAAAACGTAAAATCTTGAGGATGAGGTGTTTCGAGAAGGGCAAAAAAGAGAGAATAAAATAACAAGGCGGAAAAAGCGCGCGCTTCGTCTCCAACCTGGTGGTGGTCTTCGTTGAGATGGAGAACAATAGAATTCGGAAATATGAAACGTATTGTTGCCAAAGAAGAGAGAGGTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATTTTCCTGAACACATTTTTG</pcr_primer_p1>
		<pcr_primer_p2>CGCGACACCTGTAATAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>GTATTTTCCTGAACACATTTTTGGAAAATTCGAATTTCTGTTTGAATCAGAGAGTAAAAAATAAATCTATGAAAAAATACTTAATTCGACAAGACAAGGTCTTCAACGTAATAAATTATTTCAATTGCGCTAAATTATTAAGCCACGGGTCGCAGCTACCGCTGCTCTTGAGGCCTAATTATCCTGGGCTCCTCTGTAAGATACTAAAAATTTGTAAGGTTTAAAGCTAACTTTAGAAGGTCCTTCTATTACAGGTGTCGCG</canonical_amplicon>
		<polymorphic_amplicon>GTATTTTCCTGAACACATTTTTGGAAAATTCGAATTTCTGTTTGAATCAGAGAGTAAAAAAKAAATCTATGAAAAAATACTTAATTCGACAAGACAAGGTCTTCAACGTAATAAATTATTTCAATTGCGCTAAATTATTAAGCCACGGGTCGCAGCTACCGCTGCTCTTGAGGCCTAATTATCCTGGGCTCCTCTGTAAGATACTAAAAATTTGTAAGGTTTAAAGCTAACTTTAGAAGGTCCTTCTATTACAGGTGTCGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8311</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>54297</contig_pos>
        <strand></strand>
        <context>TTCGAATTTC[T/C]GTTTGAATCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTATCTATTTGAGTATTTTCCTGAACACATTTTTGGAAAATTCGAATTTC</left_flank>
        <right_flank>GTTTGAATCAGAGAGTAAAAAATAAATCTATGAAAAAATACTTAATTCGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAAAAACCCCCGTAAAATCTCCTGTCCCCCCACCTTTAATTAATTTTTTTGCTAGCGTGATTGGGTACCTGAGTGGTCTGACACTGATTGTTTCGGTTGTCACAAGTAGCAGACGTCGAATATCTGAAATGGAGGAGCTTTTGAATTCTCAAAGCGACTTTTGAAGCTTACCGTAATGGATAGTCGCCATGCCAACCGTTACATTGATAGCAGTTGAGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACATTTTTGGAAAATTCGAATTTCTGTTTGAATCAGAGAGTAAAAAATAAATCTATGAAAAAATACTTAATTCGACAAGACAAGGTCTTCAACGTAATAAATTATTTCAATTGCGCTAAATTATTAAGCCACGGGTCGCAGCTACCGCTGCTCTTGAGGCCTAATTATCCTGGGCTCCTCTGTAAGATACTAAAAATTTGTAAGGTTTAAAGCTAACTTTAGAAGGTCCTTCTATTACAGGTGTCGCGGTAAACTGTCATAATCAAGTAAGACCACAACACCCTTATTATCAAACTCAAGCTTATAGACAATTCAAAAAAAAACTAACCTATCGAACCAAAAACAAGTAGAATCCAAATTTCGAGCTGCATCGAAAACGTAAAATCTTGAGGATGAGGTGTTTCGAGAAGGGCAAAAAAGAGAGAATAAAATAACAAGGCGGAAAAAGCGCGCGCTTCGTCTCCAACCTGGTGGTGGTCTTCGTTGAGATGGAGAACAATAGAATTCGGAAATATGAAACGTATT</canonical>
            <polymorphic>CCAAAAAACCCCCGTAAAATCTCCTGTCCCCCCACCTTTAATTAATTTTTTTGCTAGCGTGATTGGGTACCTGAGTGGTCTGACACTGATTGTTTCGGTTGTCACAAGTAGCAGACGTCGAATATCTGAAATGGAGGAGCTTTTGAATTCTCAAAGCGACTTTTGAAGCTTACCGTAATGGATAGTCGCCATGCCAACCGTTACATTGATAGCAGTTGAGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACATTTTTGGAAAATTCGAATTTCYGTTTGAATCAGAGAGTAAAAAATAAATCTATGAAAAAATACTTAATTCGACAAGACAAGGTCTTCAACGTAATAAATTATTTCAATTGCGCTAAATTATTAAGCCACGGGTCGCAGCTACCGCTGCTCTTGAGGCCTAATTATCCTGGGCTCCTCTGTAAGATACTAAAAATTTGTAAGGTTTAAAGCTAACTTTAGAAGGTCCTTCTATTACAGGTGTCGCGGTAAACTGTCATAATCAAGTAAGACCACAACACCCTTATTATCAAACTCAAGCTTATAGACAATTCAAAAAAAAACTAACCTATCGAACCAAAAACAAGTAGAATCCAAATTTCGAGCTGCATCGAAAACGTAAAATCTTGAGGATGAGGTGTTTCGAGAAGGGCAAAAAAGAGAGAATAAAATAACAAGGCGGAAAAAGCGCGCGCTTCGTCTCCAACCTGGTGGTGGTCTTCGTTGAGATGGAGAACAATAGAATTCGGAAATATGAAACGTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGCATAGGTATCTGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCTTGTCTTGTCGAATTAAGTAT</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>AGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACATTTTTGGAAAATTCGAATTTCTGTTTGAATCAGAGAGTAAAAAATAAATCTATGAAAAAATACTTAATTCGACAAGACAAGG</canonical_amplicon>
		<polymorphic_amplicon>AGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACATTTTTGGAAAATTCGAATTTCYGTTTGAATCAGAGAGTAAAAAATAAATCTATGAAAAAATACTTAATTCGACAAGACAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8312</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>60082</contig_pos>
        <strand>+</strand>
        <context>AGACAACGTT[C/T]TCTTAAAATC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAAAAAAAATCTCCTGTCTCTCCTCCATTGAACTACGGTAGACAACGTT</left_flank>
        <right_flank>TCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGAAAAAAAAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTACTCGAAAGGTATCGTGCTCTTGAGTTACCGTACTCTACAGGTATCGTACCTTAGTGGTACCGTACCCTAGAGGTATCGTACTCTTGAGGTATCGTACTCTAGAGGTATCGTATCCTCGAGGTATCGTATCCTCGAGGTATCGTACTCTTGATGTACCGTACCATTAAGATACCGAACCCTCGAGGTACCGTATCCTTGAGATACCAAACATTTGAGGTACCGTCCTCAAAATGTATCGTATTCTTGAGATATCGTGCCCTTAAGATACCGTATCCTTAAGTGCAGGAATGAAGGAACAAAAATGAATAATATAACTGTAAGCCCCTCAAGAAGTTGAAATTGTGGGCTCACCGTTTGAGGTGCTGGGTTGTTACCAGCTGAGCTAAAATACATACCGTAATTGAATACTGTAACTCTGAAAAATTCCGAAAAAATCTAAAATTCCGAAAAAAAATCTCCTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCCCTGCAAAATTACATTTATCATATTTCGACAAAATCCATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGTTTGTGCGATCTGTGCTAGAATTTAGTTTTTAAAGGCTTAAAATGAAAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTACGTTAGTGATCACCGATGTCTTATTGGACGATATCTTTGAAAGATGAGATTCCTGTGTCTTGAGAAAAATAACAAACAACATCTTTCTCTGATTTCTATCTTGACCATTGGTCCTCTAGGAAATTAATAATACAGACACAATACTTTATTCAGAAACCATAAATTGGCAAGGAAGCTTAAACTACCTGCATTTACGAACAGAT</canonical>
            <polymorphic>TCGTACTCGAAAGGTATCGTGCTCTTGAGTTACCGTACTCTACAGGTATCGTACCTTAGTGGTACCGTACCCTAGAGGTATCGTACTCTTGAGGTATCGTACTCTAGAGGTATCGTATCCTCGAGGTATCGTATCCTCGAGGTATCGTACTCTTGATGTACCGTACCATTAAGATACCGAACCCTCGAGGTACCGTATCCTTGAGATACCAAACATTTGAGGTACCGTCCTCAAAATGTATCGTATTCTTGAGATATCGTGCCCTTAAGATACCGTATCCTTAAGTGCAGGAATGAAGGAACAAAAATGAATAATATAACTGTAAGCCCCTCAAGAAGTTGAAATTGTGGGCTCACCGTTTGAGGTGCTGGGTTGTTACCAGCTGAGCTAAAATACATACCGTAATTGAATACTGTAACTCTGAAAAATTCCGAAAAAATCTAAAATTCCGAAAAAAAATCTCCTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTYTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCCCTGCAAAATTACATTTATCATATTTCGACAAAATCCATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGTTTGTGCGATCTGTGCTAGAATTTAGTTTTTAAAGGCTTAAAATGAAAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTACGTTAGTGATCACCGATGTCTTATTGGACGATATCTTTGAAAGATGAGATTCCTGTGTCTTGAGAAAAATAACAAACAACATCTTTCTCTGATTTCTATCTTGACCATTGGTCCTCTAGGAAATTAATAATACAGACACAATACTTTATTCAGAAACCATAAATTGGCAAGGAAGCTTAAACTACCTGCATTTACGAACAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAAGGAACAAAAATGAATAA</pcr_primer_p1>
		<pcr_primer_p2>GGGAAAGATTCTTGAATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>AATGAAGGAACAAAAATGAATAATATAACTGTAAGCCCCTCAAGAAGTTGAAATTGTGGGCTCACCGTTTGAGGTGCTGGGTTGTTACCAGCTGAGCTAAAATACATACCGTAATTGAATACTGTAACTCTGAAAAATTCCGAAAAAATCTAAAATTCCGAAAAAAAATCTCCTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCC</canonical_amplicon>
		<polymorphic_amplicon>AATGAAGGAACAAAAATGAATAATATAACTGTAAGCCCCTCAAGAAGTTGAAATTGTGGGCTCACCGTTTGAGGTGCTGGGTTGTTACCAGCTGAGCTAAAATACATACCGTAATTGAATACTGTAACTCTGAAAAATTCCGAAAAAATCTAAAATTCCGAAAAAAAATCTCCTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTYTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8313</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>60100</contig_pos>
        <strand>+</strand>
        <context>ATCGTTTATG[A/G]CGTCCCTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATG</left_flank>
        <right_flank>CGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAACTTCAAATTCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGCTCTTGAGTTACCGTACTCTACAGGTATCGTACCTTAGTGGTACCGTACCCTAGAGGTATCGTACTCTTGAGGTATCGTACTCTAGAGGTATCGTATCCTCGAGGTATCGTATCCTCGAGGTATCGTACTCTTGATGTACCGTACCATTAAGATACCGAACCCTCGAGGTACCGTATCCTTGAGATACCAAACATTTGAGGTACCGTCCTCAAAATGTATCGTATTCTTGAGATATCGTGCCCTTAAGATACCGTATCCTTAAGTGCAGGAATGAAGGAACAAAAATGAATAATATAACTGTAAGCCCCTCAAGAAGTTGAAATTGTGGGCTCACCGTTTGAGGTGCTGGGTTGTTACCAGCTGAGCTAAAATACATACCGTAATTGAATACTGTAACTCTGAAAAATTCCGAAAAAATCTAAAATTCCGAAAAAAAATCTCCTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCCCTGCAAAATTACATTTATCATATTTCGACAAAATCCATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGTTTGTGCGATCTGTGCTAGAATTTAGTTTTTAAAGGCTTAAAATGAAAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTACGTTAGTGATCACCGATGTCTTATTGGACGATATCTTTGAAAGATGAGATTCCTGTGTCTTGAGAAAAATAACAAACAACATCTTTCTCTGATTTCTATCTTGACCATTGGTCCTCTAGGAAATTAATAATACAGACACAATACTTTATTCAGAAACCATAAATTGGCAAGGAAGCTTAAACTACCTGCATTTACGAACAGATACACATGAGATAGATATG</canonical>
            <polymorphic>GTGCTCTTGAGTTACCGTACTCTACAGGTATCGTACCTTAGTGGTACCGTACCCTAGAGGTATCGTACTCTTGAGGTATCGTACTCTAGAGGTATCGTATCCTCGAGGTATCGTATCCTCGAGGTATCGTACTCTTGATGTACCGTACCATTAAGATACCGAACCCTCGAGGTACCGTATCCTTGAGATACCAAACATTTGAGGTACCGTCCTCAAAATGTATCGTATTCTTGAGATATCGTGCCCTTAAGATACCGTATCCTTAAGTGCAGGAATGAAGGAACAAAAATGAATAATATAACTGTAAGCCCCTCAAGAAGTTGAAATTGTGGGCTCACCGTTTGAGGTGCTGGGTTGTTACCAGCTGAGCTAAAATACATACCGTAATTGAATACTGTAACTCTGAAAAATTCCGAAAAAATCTAAAATTCCGAAAAAAAATCTCCTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATGRCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCCCTGCAAAATTACATTTATCATATTTCGACAAAATCCATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGTTTGTGCGATCTGTGCTAGAATTTAGTTTTTAAAGGCTTAAAATGAAAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTACGTTAGTGATCACCGATGTCTTATTGGACGATATCTTTGAAAGATGAGATTCCTGTGTCTTGAGAAAAATAACAAACAACATCTTTCTCTGATTTCTATCTTGACCATTGGTCCTCTAGGAAATTAATAATACAGACACAATACTTTATTCAGAAACCATAAATTGGCAAGGAAGCTTAAACTACCTGCATTTACGAACAGATACACATGAGATAGATATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTCTCTCCTCCATTGAACTA</pcr_primer_p1>
		<pcr_primer_p2>ACTGATTTGATCTTTTGTAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCCCTGCAAAATTACATTTATCATATTTCGACAAAATCCATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGT</canonical_amplicon>
		<polymorphic_amplicon>CTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATGRCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCCCTGCAAAATTACATTTATCATATTTCGACAAAATCCATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8314</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>60140</contig_pos>
        <strand></strand>
        <context>AAGTGAAAAA[C/A]TTCAAATTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATCGTTTATGGCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAA</left_flank>
        <right_flank>TTCAAATTCAAGAATCTTTCCCCTGCAAAATTACATTTATCATATTTCGA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGTACCGTACCCTAGAGGTATCGTACTCTTGAGGTATCGTACTCTAGAGGTATCGTATCCTCGAGGTATCGTATCCTCGAGGTATCGTACTCTTGATGTACCGTACCATTAAGATACCGAACCCTCGAGGTACCGTATCCTTGAGATACCAAACATTTGAGGTACCGTCCTCAAAATGTATCGTATTCTTGAGATATCGTGCCCTTAAGATACCGTATCCTTAAGTGCAGGAATGAAGGAACAAAAATGAATAATATAACTGTAAGCCCCTCAAGAAGTTGAAATTGTGGGCTCACCGTTTGAGGTGCTGGGTTGTTACCAGCTGAGCTAAAATACATACCGTAATTGAATACTGTAACTCTGAAAAATTCCGAAAAAATCTAAAATTCCGAAAAAAAATCTCCTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCCCTGCAAAATTACATTTATCATATTTCGACAAAATCCATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGTTTGTGCGATCTGTGCTAGAATTTAGTTTTTAAAGGCTTAAAATGAAAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTACGTTAGTGATCACCGATGTCTTATTGGACGATATCTTTGAAAGATGAGATTCCTGTGTCTTGAGAAAAATAACAAACAACATCTTTCTCTGATTTCTATCTTGACCATTGGTCCTCTAGGAAATTAATAATACAGACACAATACTTTATTCAGAAACCATAAATTGGCAAGGAAGCTTAAACTACCTGCATTTACGAACAGATACACATGAGATAGATATGAAAGATAGGGAGGGAGATAGGGATGATTTGAGATTTTTGA</canonical>
            <polymorphic>GTGGTACCGTACCCTAGAGGTATCGTACTCTTGAGGTATCGTACTCTAGAGGTATCGTATCCTCGAGGTATCGTATCCTCGAGGTATCGTACTCTTGATGTACCGTACCATTAAGATACCGAACCCTCGAGGTACCGTATCCTTGAGATACCAAACATTTGAGGTACCGTCCTCAAAATGTATCGTATTCTTGAGATATCGTGCCCTTAAGATACCGTATCCTTAAGTGCAGGAATGAAGGAACAAAAATGAATAATATAACTGTAAGCCCCTCAAGAAGTTGAAATTGTGGGCTCACCGTTTGAGGTGCTGGGTTGTTACCAGCTGAGCTAAAATACATACCGTAATTGAATACTGTAACTCTGAAAAATTCCGAAAAAATCTAAAATTCCGAAAAAAAATCTCCTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAAMTTCAAATTCAAGAATCTTTCCCCTGCAAAATTACATTTATCATATTTCGACAAAATCCATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGTTTGTGCGATCTGTGCTAGAATTTAGTTTTTAAAGGCTTAAAATGAAAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTACGTTAGTGATCACCGATGTCTTATTGGACGATATCTTTGAAAGATGAGATTCCTGTGTCTTGAGAAAAATAACAAACAACATCTTTCTCTGATTTCTATCTTGACCATTGGTCCTCTAGGAAATTAATAATACAGACACAATACTTTATTCAGAAACCATAAATTGGCAAGGAAGCTTAAACTACCTGCATTTACGAACAGATACACATGAGATAGATATGAAAGATAGGGAGGGAGATAGGGATGATTTGAGATTTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTCTCTCCTCCATTGAACTA</pcr_primer_p1>
		<pcr_primer_p2>ACTGATTTGATCTTTTGTAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCCCTGCAAAATTACATTTATCATATTTCGACAAAATCCATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGT</canonical_amplicon>
		<polymorphic_amplicon>CTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAAMTTCAAATTCAAGAATCTTTCCCCTGCAAAATTACATTTATCATATTTCGACAAAATCCATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8315</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>60174</contig_pos>
        <strand>+</strand>
        <context>TGCAAAATTA[A/C]ATTTATCATA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCCCTGCAAAATTA</left_flank>
        <right_flank>ATTTATCATATTTCGACAAAATCCATCATCCCCCTCCAGCGCAGCATATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTATCGTACTCTAGAGGTATCGTATCCTCGAGGTATCGTATCCTCGAGGTATCGTACTCTTGATGTACCGTACCATTAAGATACCGAACCCTCGAGGTACCGTATCCTTGAGATACCAAACATTTGAGGTACCGTCCTCAAAATGTATCGTATTCTTGAGATATCGTGCCCTTAAGATACCGTATCCTTAAGTGCAGGAATGAAGGAACAAAAATGAATAATATAACTGTAAGCCCCTCAAGAAGTTGAAATTGTGGGCTCACCGTTTGAGGTGCTGGGTTGTTACCAGCTGAGCTAAAATACATACCGTAATTGAATACTGTAACTCTGAAAAATTCCGAAAAAATCTAAAATTCCGAAAAAAAATCTCCTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCCCTGCAAAATTACATTTATCATATTTCGACAAAATCCATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGTTTGTGCGATCTGTGCTAGAATTTAGTTTTTAAAGGCTTAAAATGAAAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTACGTTAGTGATCACCGATGTCTTATTGGACGATATCTTTGAAAGATGAGATTCCTGTGTCTTGAGAAAAATAACAAACAACATCTTTCTCTGATTTCTATCTTGACCATTGGTCCTCTAGGAAATTAATAATACAGACACAATACTTTATTCAGAAACCATAAATTGGCAAGGAAGCTTAAACTACCTGCATTTACGAACAGATACACATGAGATAGATATGAAAGATAGGGAGGGAGATAGGGATGATTTGAGATTTTTGAAGTGTGACAGAGGGGAATGCTTGAAAGGTAAAAA</canonical>
            <polymorphic>GGTATCGTACTCTAGAGGTATCGTATCCTCGAGGTATCGTATCCTCGAGGTATCGTACTCTTGATGTACCGTACCATTAAGATACCGAACCCTCGAGGTACCGTATCCTTGAGATACCAAACATTTGAGGTACCGTCCTCAAAATGTATCGTATTCTTGAGATATCGTGCCCTTAAGATACCGTATCCTTAAGTGCAGGAATGAAGGAACAAAAATGAATAATATAACTGTAAGCCCCTCAAGAAGTTGAAATTGTGGGCTCACCGTTTGAGGTGCTGGGTTGTTACCAGCTGAGCTAAAATACATACCGTAATTGAATACTGTAACTCTGAAAAATTCCGAAAAAATCTAAAATTCCGAAAAAAAATCTCCTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCCCTGCAAAATTAMATTTATCATATTTCGACAAAATCCATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGTTTGTGCGATCTGTGCTAGAATTTAGTTTTTAAAGGCTTAAAATGAAAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTACGTTAGTGATCACCGATGTCTTATTGGACGATATCTTTGAAAGATGAGATTCCTGTGTCTTGAGAAAAATAACAAACAACATCTTTCTCTGATTTCTATCTTGACCATTGGTCCTCTAGGAAATTAATAATACAGACACAATACTTTATTCAGAAACCATAAATTGGCAAGGAAGCTTAAACTACCTGCATTTACGAACAGATACACATGAGATAGATATGAAAGATAGGGAGGGAGATAGGGATGATTTGAGATTTTTGAAGTGTGACAGAGGGGAATGCTTGAAAGGTAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTCTCTCCTCCATTGAACTA</pcr_primer_p1>
		<pcr_primer_p2>ACTGATTTGATCTTTTGTAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCCCTGCAAAATTACATTTATCATATTTCGACAAAATCCATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGT</canonical_amplicon>
		<polymorphic_amplicon>CTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCCCTGCAAAATTAMATTTATCATATTTCGACAAAATCCATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8316</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>60198</contig_pos>
        <strand>+</strand>
        <context>CGACAAAATC[C/T]ATCATCCCCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAAGAATCTTTCCCCTGCAAAATTACATTTATCATATTTCGACAAAATC</left_flank>
        <right_flank>ATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCTCGAGGTATCGTATCCTCGAGGTATCGTACTCTTGATGTACCGTACCATTAAGATACCGAACCCTCGAGGTACCGTATCCTTGAGATACCAAACATTTGAGGTACCGTCCTCAAAATGTATCGTATTCTTGAGATATCGTGCCCTTAAGATACCGTATCCTTAAGTGCAGGAATGAAGGAACAAAAATGAATAATATAACTGTAAGCCCCTCAAGAAGTTGAAATTGTGGGCTCACCGTTTGAGGTGCTGGGTTGTTACCAGCTGAGCTAAAATACATACCGTAATTGAATACTGTAACTCTGAAAAATTCCGAAAAAATCTAAAATTCCGAAAAAAAATCTCCTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCCCTGCAAAATTACATTTATCATATTTCGACAAAATCCATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGTTTGTGCGATCTGTGCTAGAATTTAGTTTTTAAAGGCTTAAAATGAAAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTACGTTAGTGATCACCGATGTCTTATTGGACGATATCTTTGAAAGATGAGATTCCTGTGTCTTGAGAAAAATAACAAACAACATCTTTCTCTGATTTCTATCTTGACCATTGGTCCTCTAGGAAATTAATAATACAGACACAATACTTTATTCAGAAACCATAAATTGGCAAGGAAGCTTAAACTACCTGCATTTACGAACAGATACACATGAGATAGATATGAAAGATAGGGAGGGAGATAGGGATGATTTGAGATTTTTGAAGTGTGACAGAGGGGAATGCTTGAAAGGTAAAAAAGGCCCGTAAAATTGAAAGAGCTC</canonical>
            <polymorphic>ATCCTCGAGGTATCGTATCCTCGAGGTATCGTACTCTTGATGTACCGTACCATTAAGATACCGAACCCTCGAGGTACCGTATCCTTGAGATACCAAACATTTGAGGTACCGTCCTCAAAATGTATCGTATTCTTGAGATATCGTGCCCTTAAGATACCGTATCCTTAAGTGCAGGAATGAAGGAACAAAAATGAATAATATAACTGTAAGCCCCTCAAGAAGTTGAAATTGTGGGCTCACCGTTTGAGGTGCTGGGTTGTTACCAGCTGAGCTAAAATACATACCGTAATTGAATACTGTAACTCTGAAAAATTCCGAAAAAATCTAAAATTCCGAAAAAAAATCTCCTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCCCTGCAAAATTACATTTATCATATTTCGACAAAATCYATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGTTTGTGCGATCTGTGCTAGAATTTAGTTTTTAAAGGCTTAAAATGAAAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTACGTTAGTGATCACCGATGTCTTATTGGACGATATCTTTGAAAGATGAGATTCCTGTGTCTTGAGAAAAATAACAAACAACATCTTTCTCTGATTTCTATCTTGACCATTGGTCCTCTAGGAAATTAATAATACAGACACAATACTTTATTCAGAAACCATAAATTGGCAAGGAAGCTTAAACTACCTGCATTTACGAACAGATACACATGAGATAGATATGAAAGATAGGGAGGGAGATAGGGATGATTTGAGATTTTTGAAGTGTGACAGAGGGGAATGCTTGAAAGGTAAAAAAGGCCCGTAAAATTGAAAGAGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTCTCTCCTCCATTGAACTA</pcr_primer_p1>
		<pcr_primer_p2>ACTGATTTGATCTTTTGTAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCCCTGCAAAATTACATTTATCATATTTCGACAAAATCCATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGT</canonical_amplicon>
		<polymorphic_amplicon>CTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCCCTGCAAAATTACATTTATCATATTTCGACAAAATCYATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8317</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>60330</contig_pos>
        <strand></strand>
        <context>TTTAAAGGCT[T/C]AAAATGYAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGATCAAATCAGTTTGTGCGATCTGTGCTAGAATTTAGTTTTTAAAGGCT</left_flank>
        <right_flank>AAAATGAAAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTAC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAGATATCGTGCCCTTAAGATACCGTATCCTTAAGTGCAGGAATGAAGGAACAAAAATGAATAATATAACTGTAAGCCCCTCAAGAAGTTGAAATTGTGGGCTCACCGTTTGAGGTGCTGGGTTGTTACCAGCTGAGCTAAAATACATACCGTAATTGAATACTGTAACTCTGAAAAATTCCGAAAAAATCTAAAATTCCGAAAAAAAATCTCCTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCCCTGCAAAATTACATTTATCATATTTCGACAAAATCCATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGTTTGTGCGATCTGTGCTAGAATTTAGTTTTTAAAGGCTTAAAATGAAAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTACGTTAGTGATCACCGATGTCTTATTGGACGATATCTTTGAAAGATGAGATTCCTGTGTCTTGAGAAAAATAACAAACAACATCTTTCTCTGATTTCTATCTTGACCATTGGTCCTCTAGGAAATTAATAATACAGACACAATACTTTATTCAGAAACCATAAATTGGCAAGGAAGCTTAAACTACCTGCATTTACGAACAGATACACATGAGATAGATATGAAAGATAGGGAGGGAGATAGGGATGATTTGAGATTTTTGAAGTGTGACAGAGGGGAATGCTTGAAAGGTAAAAAAGGCCCGTAAAATTGAAAGAGCTCAATTGAGGAAGATATTTCTGACGCATGGATCGAACGTCATCAGATGGAAGATGTCCGAGACGCGTGTATGATTGTAGATTGCTTTGACGGCGCAGCGAATCGAGCTGACCAAGAGGATGATCTCTCCGAAGC</canonical>
            <polymorphic>TTGAGATATCGTGCCCTTAAGATACCGTATCCTTAAGTGCAGGAATGAAGGAACAAAAATGAATAATATAACTGTAAGCCCCTCAAGAAGTTGAAATTGTGGGCTCACCGTTTGAGGTGCTGGGTTGTTACCAGCTGAGCTAAAATACATACCGTAATTGAATACTGTAACTCTGAAAAATTCCGAAAAAATCTAAAATTCCGAAAAAAAATCTCCTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCCCTGCAAAATTACATTTATCATATTTCGACAAAATCCATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGTTTGTGCGATCTGTGCTAGAATTTAGTTTTTAAAGGCTYAAAATGAAAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTACGTTAGTGATCACCGATGTCTTATTGGACGATATCTTTGAAAGATGAGATTCCTGTGTCTTGAGAAAAATAACAAACAACATCTTTCTCTGATTTCTATCTTGACCATTGGTCCTCTAGGAAATTAATAATACAGACACAATACTTTATTCAGAAACCATAAATTGGCAAGGAAGCTTAAACTACCTGCATTTACGAACAGATACACATGAGATAGATATGAAAGATAGGGAGGGAGATAGGGATGATTTGAGATTTTTGAAGTGTGACAGAGGGGAATGCTTGAAAGGTAAAAAAGGCCCGTAAAATTGAAAGAGCTCAATTGAGGAAGATATTTCTGACGCATGGATCGAACGTCATCAGATGGAAGATGTCCGAGACGCGTGTATGATTGTAGATTGCTTTGACGGCGCAGCGAATCGAGCTGACCAAGAGGATGATCTCTCCGAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>274 236 222 174 53 17 16 8</canonical_bands>
                <polymorphic_bands>274 236 222 182 53 17 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTACGTGCCATATGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>AAATCAGAGAAAGATGTTGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGTTTGTGCGATCTGTGCTAGAATTTAGTTTTTAAAGGCTTAAAATGAAAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTACGTTAGTGATCACCGATGTCTTATTGGACGATATCTTTGAAAGATGAGATTCCTGTGTCTTGAGAAAAATAACAAACAACATCTTTCTCTGATTT</canonical_amplicon>
		<polymorphic_amplicon>AAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGTTTGTGCGATCTGTGCTAGAATTTAGTTTTTAAAGGCTYAAAATGAAAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTACGTTAGTGATCACCGATGTCTTATTGGACGATATCTTTGAAAGATGAGATTCCTGTGTCTTGAGAAAAATAACAAACAACATCTTTCTCTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8318</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>60380</contig_pos>
        <strand>+</strand>
        <context>ATCCTTTTTA[C/T]GTTAGTGATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAATGAAAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTA</left_flank>
        <right_flank>GTTAGTGATCACCGATGTCTTATTGGACGATATCTTTGAAAGATGAGATT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACAAAAATGAATAATATAACTGTAAGCCCCTCAAGAAGTTGAAATTGTGGGCTCACCGTTTGAGGTGCTGGGTTGTTACCAGCTGAGCTAAAATACATACCGTAATTGAATACTGTAACTCTGAAAAATTCCGAAAAAATCTAAAATTCCGAAAAAAAATCTCCTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCCCTGCAAAATTACATTTATCATATTTCGACAAAATCCATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGTTTGTGCGATCTGTGCTAGAATTTAGTTTTTAAAGGCTTAAAATGAAAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTACGTTAGTGATCACCGATGTCTTATTGGACGATATCTTTGAAAGATGAGATTCCTGTGTCTTGAGAAAAATAACAAACAACATCTTTCTCTGATTTCTATCTTGACCATTGGTCCTCTAGGAAATTAATAATACAGACACAATACTTTATTCAGAAACCATAAATTGGCAAGGAAGCTTAAACTACCTGCATTTACGAACAGATACACATGAGATAGATATGAAAGATAGGGAGGGAGATAGGGATGATTTGAGATTTTTGAAGTGTGACAGAGGGGAATGCTTGAAAGGTAAAAAAGGCCCGTAAAATTGAAAGAGCTCAATTGAGGAAGATATTTCTGACGCATGGATCGAACGTCATCAGATGGAAGATGTCCGAGACGCGTGTATGATTGTAGATTGCTTTGACGGCGCAGCGAATCGAGCTGACCAAGAGGATGATCTCTCCGAAGCGTTCGGCTCCGTTGTCTGGAGACTTTTGGGCGGAATGCTCCATCAGCTCC</canonical>
            <polymorphic>GAACAAAAATGAATAATATAACTGTAAGCCCCTCAAGAAGTTGAAATTGTGGGCTCACCGTTTGAGGTGCTGGGTTGTTACCAGCTGAGCTAAAATACATACCGTAATTGAATACTGTAACTCTGAAAAATTCCGAAAAAATCTAAAATTCCGAAAAAAAATCTCCTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCCCTGCAAAATTACATTTATCATATTTCGACAAAATCCATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGTTTGTGCGATCTGTGCTAGAATTTAGTTTTTAAAGGCTTAAAATGAAAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTAYGTTAGTGATCACCGATGTCTTATTGGACGATATCTTTGAAAGATGAGATTCCTGTGTCTTGAGAAAAATAACAAACAACATCTTTCTCTGATTTCTATCTTGACCATTGGTCCTCTAGGAAATTAATAATACAGACACAATACTTTATTCAGAAACCATAAATTGGCAAGGAAGCTTAAACTACCTGCATTTACGAACAGATACACATGAGATAGATATGAAAGATAGGGAGGGAGATAGGGATGATTTGAGATTTTTGAAGTGTGACAGAGGGGAATGCTTGAAAGGTAAAAAAGGCCCGTAAAATTGAAAGAGCTCAATTGAGGAAGATATTTCTGACGCATGGATCGAACGTCATCAGATGGAAGATGTCCGAGACGCGTGTATGATTGTAGATTGCTTTGACGGCGCAGCGAATCGAGCTGACCAAGAGGATGATCTCTCCGAAGCGTTCGGCTCCGTTGTCTGGAGACTTTTGGGCGGAATGCTCCATCAGCTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>353 197 156 148 146</canonical_bands>
                <polymorphic_bands>499 197 156 148</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATCTGTGCTAGAATTTAGTTT</pcr_primer_p1>
		<pcr_primer_p2>GCCAATTTATGGTTTCTGAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGATCTGTGCTAGAATTTAGTTTTTAAAGGCTTAAAATGAAAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTACGTTAGTGATCACCGATGTCTTATTGGACGATATCTTTGAAAGATGAGATTCCTGTGTCTTGAGAAAAATAACAAACAACATCTTTCTCTGATTTCTATCTTGACCATTGGTCCTCTAGGAAATTAATAATACAGACACAATACTTTATTCAGAAACCATAAATTGGC</canonical_amplicon>
		<polymorphic_amplicon>CGATCTGTGCTAGAATTTAGTTTTTAAAGGCTTAAAATGAAAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTAYGTTAGTGATCACCGATGTCTTATTGGACGATATCTTTGAAAGATGAGATTCCTGTGTCTTGAGAAAAATAACAAACAACATCTTTCTCTGATTTCTATCTTGACCATTGGTCCTCTAGGAAATTAATAATACAGACACAATACTTTATTCAGAAACCATAAATTGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8319</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>60393</contig_pos>
        <strand>+</strand>
        <context>TAGTGATCAC[C/T]GATGTCTTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTACGTTAGTGATCAC</left_flank>
        <right_flank>GATGTCTTATTGGACGATATCTTTGAAAGATGAGATTCCTGTGTCTTGAG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATATAACTGTAAGCCCCTCAAGAAGTTGAAATTGTGGGCTCACCGTTTGAGGTGCTGGGTTGTTACCAGCTGAGCTAAAATACATACCGTAATTGAATACTGTAACTCTGAAAAATTCCGAAAAAATCTAAAATTCCGAAAAAAAATCTCCTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCCCTGCAAAATTACATTTATCATATTTCGACAAAATCCATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGTTTGTGCGATCTGTGCTAGAATTTAGTTTTTAAAGGCTTAAAATGAAAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTACGTTAGTGATCACCGATGTCTTATTGGACGATATCTTTGAAAGATGAGATTCCTGTGTCTTGAGAAAAATAACAAACAACATCTTTCTCTGATTTCTATCTTGACCATTGGTCCTCTAGGAAATTAATAATACAGACACAATACTTTATTCAGAAACCATAAATTGGCAAGGAAGCTTAAACTACCTGCATTTACGAACAGATACACATGAGATAGATATGAAAGATAGGGAGGGAGATAGGGATGATTTGAGATTTTTGAAGTGTGACAGAGGGGAATGCTTGAAAGGTAAAAAAGGCCCGTAAAATTGAAAGAGCTCAATTGAGGAAGATATTTCTGACGCATGGATCGAACGTCATCAGATGGAAGATGTCCGAGACGCGTGTATGATTGTAGATTGCTTTGACGGCGCAGCGAATCGAGCTGACCAAGAGGATGATCTCTCCGAAGCGTTCGGCTCCGTTGTCTGGAGACTTTTGGGCGGAATGCTCCATCAGCTCCGACATGCACTTGT</canonical>
            <polymorphic>TAATATAACTGTAAGCCCCTCAAGAAGTTGAAATTGTGGGCTCACCGTTTGAGGTGCTGGGTTGTTACCAGCTGAGCTAAAATACATACCGTAATTGAATACTGTAACTCTGAAAAATTCCGAAAAAATCTAAAATTCCGAAAAAAAATCTCCTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCCCTGCAAAATTACATTTATCATATTTCGACAAAATCCATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGTTTGTGCGATCTGTGCTAGAATTTAGTTTTTAAAGGCTTAAAATGAAAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTACGTTAGTGATCACYGATGTCTTATTGGACGATATCTTTGAAAGATGAGATTCCTGTGTCTTGAGAAAAATAACAAACAACATCTTTCTCTGATTTCTATCTTGACCATTGGTCCTCTAGGAAATTAATAATACAGACACAATACTTTATTCAGAAACCATAAATTGGCAAGGAAGCTTAAACTACCTGCATTTACGAACAGATACACATGAGATAGATATGAAAGATAGGGAGGGAGATAGGGATGATTTGAGATTTTTGAAGTGTGACAGAGGGGAATGCTTGAAAGGTAAAAAAGGCCCGTAAAATTGAAAGAGCTCAATTGAGGAAGATATTTCTGACGCATGGATCGAACGTCATCAGATGGAAGATGTCCGAGACGCGTGTATGATTGTAGATTGCTTTGACGGCGCAGCGAATCGAGCTGACCAAGAGGATGATCTCTCCGAAGCGTTCGGCTCCGTTGTCTGGAGACTTTTGGGCGGAATGCTCCATCAGCTCCGACATGCACTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATCTGTGCTAGAATTTAGTTT</pcr_primer_p1>
		<pcr_primer_p2>GCCAATTTATGGTTTCTGAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGATCTGTGCTAGAATTTAGTTTTTAAAGGCTTAAAATGAAAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTACGTTAGTGATCACCGATGTCTTATTGGACGATATCTTTGAAAGATGAGATTCCTGTGTCTTGAGAAAAATAACAAACAACATCTTTCTCTGATTTCTATCTTGACCATTGGTCCTCTAGGAAATTAATAATACAGACACAATACTTTATTCAGAAACCATAAATTGGC</canonical_amplicon>
		<polymorphic_amplicon>CGATCTGTGCTAGAATTTAGTTTTTAAAGGCTTAAAATGAAAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTACGTTAGTGATCACYGATGTCTTATTGGACGATATCTTTGAAAGATGAGATTCCTGTGTCTTGAGAAAAATAACAAACAACATCTTTCTCTGATTTCTATCTTGACCATTGGTCCTCTAGGAAATTAATAATACAGACACAATACTTTATTCAGAAACCATAAATTGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8320</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>63083</contig_pos>
        <strand>+</strand>
        <context>GTGTGGRATC[A/C]AAATAACAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATTTTGTTTCGATGATCTTTTCAATGATCGCCAGATGTTGTGTGGAATC</left_flank>
        <right_flank>AAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAACCGAGATAATTGGGCTCAAATTGCACGTATCGAGTGGCTGTCACTTAGAGAAAATAAGGTATGTTCCACAGGGTCTATTTTTGAAGACTTATGTAGCTAGCTTCGACTTTTGATAGCAAAATTTCAATTTTTAAAAACATGGAAAAATAAAATTTACCTCCATTATCACTTTCACAACTCGACTGTGGTGGACTAGGCGAGAAGTTCAGCGCGACTTCAATCGACTGGCTCATATCGTCGGTGAGAATGGTTTTGGGCTTCCTGGGACCAAGAAGGTCTCGTCTTTGGATGGCTGGAAAGAATGGAATTAATGAGAGGGACCAAAAAAAAGGGAAGGACATCCCAAAAATGACGGGATTAGCAAATGAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGATCGCCAGATGTTGTGTGGAATCAAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATCTCAC</canonical>
            <polymorphic>GAGAACCGAGATAATTGGGCTCAAATTGCACGTATCGAGTGGCTGTCACTTAGAGAAAATAAGGTATGTTCCACAGGGTCTATTTTTGAAGACTTATGTAGCTAGCTTCGACTTTTGATAGCAAAATTTCAATTTTTAAAAACATGGAAAAATAAAATTTACCTCCATTATCACTTTCACAACTCGACTGTGGTGGACTAGGCGAGAAGTTCAGCGCGACTTCAATCGACTGGCTCATATCGTCGGTGAGAATGGTTTTGGGCTTCCTGGGACCAAGAAGGTCTCGTCTTTGGATGGCTGGAAAGAATGGAATTAATGAGAGGGACCAAAAAAAAGGGAAGGACATCCCAAAAATGACGGGATTAGCAAATGAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGATCGCCAGATGTTGTGTGGAATCMAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATCTCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTAGCAAATGAGGTGACAATAC</pcr_primer_p1>
		<pcr_primer_p2>ATATACGGGAAAAATTTTGATCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTAGCAAATGAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGATCGCCAGATGTTGTGTGGAATCAAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATAT</canonical_amplicon>
		<polymorphic_amplicon>ATTAGCAAATGAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGATCGCCAGATGTTGTGTGGAATCMAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8321</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>63046</contig_pos>
        <strand>+</strand>
        <context>TTTGTTTCGA[C/T]GATCTTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGA</left_flank>
        <right_flank>GATCTTTTCAATGATCGCCAGATGTTGTGTGGAATCAAAATAACAGTTTT</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATATTAAAGATATTAATATTTTGATATCTTTCGAGAGAACCGAGATAATTGGGCTCAAATTGCACGTATCGAGTGGCTGTCACTTAGAGAAAATAAGGTATGTTCCACAGGGTCTATTTTTGAAGACTTATGTAGCTAGCTTCGACTTTTGATAGCAAAATTTCAATTTTTAAAAACATGGAAAAATAAAATTTACCTCCATTATCACTTTCACAACTCGACTGTGGTGGACTAGGCGAGAAGTTCAGCGCGACTTCAATCGACTGGCTCATATCGTCGGTGAGAATGGTTTTGGGCTTCCTGGGACCAAGAAGGTCTCGTCTTTGGATGGCTGGAAAGAATGGAATTAATGAGAGGGACCAAAAAAAAGGGAAGGACATCCCAAAAATGACGGGATTAGCAAATGAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGATCGCCAGATGTTGTGTGGAATCAAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCAT</canonical>
            <polymorphic>AAAATATTAAAGATATTAATATTTTGATATCTTTCGAGAGAACCGAGATAATTGGGCTCAAATTGCACGTATCGAGTGGCTGTCACTTAGAGAAAATAAGGTATGTTCCACAGGGTCTATTTTTGAAGACTTATGTAGCTAGCTTCGACTTTTGATAGCAAAATTTCAATTTTTAAAAACATGGAAAAATAAAATTTACCTCCATTATCACTTTCACAACTCGACTGTGGTGGACTAGGCGAGAAGTTCAGCGCGACTTCAATCGACTGGCTCATATCGTCGGTGAGAATGGTTTTGGGCTTCCTGGGACCAAGAAGGTCTCGTCTTTGGATGGCTGGAAAGAATGGAATTAATGAGAGGGACCAAAAAAAAGGGAAGGACATCCCAAAAATGACGGGATTAGCAAATGAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGAYGATCTTTTCAATGATCGCCAGATGTTGTGTGGAATCAAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTAGCAAATGAGGTGACAATAC</pcr_primer_p1>
		<pcr_primer_p2>ATATACGGGAAAAATTTTGATCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTAGCAAATGAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGATCGCCAGATGTTGTGTGGAATCAAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATAT</canonical_amplicon>
		<polymorphic_amplicon>ATTAGCAAATGAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGAYGATCTTTTCAATGATCGCCAGATGTTGTGTGGAATCAAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8324</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>66830</contig_pos>
        <strand>+</strand>
        <context>ATAGAAGTAR[A/T]TACATGCwcm</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAA</left_flank>
        <right_flank>TACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTAGCAAGAACTACAGTAAGACAATCAGCTGATCTATTTCCAGAGATCAGAAAAGGAAGAATTGAAAAAAAATTGCTCATATGCCAGTCACAAAAACTACAAGCTTCCCAAGAGAGAGAGAGAGAGAGAGAGAGAAAACATGTGCGATTTTTGAAGGTTGTTGCGCTTCTCTAAATCTGGCTTCTTTCAAAATAACATTCTAGCAGAAAAAAGCGTTTGATCAAAAAAAGAAGGAGAAGAAGAGGGTACAAAGATTATGAAGAGGGTGGGGGCTAGTCGAGTGAGCAAAAATGGAAAAGAAGAGAGCAAAAACGGATCAAACGGATATTCTTGTGTCTATAGTTTAGAAAAAGATTGGATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGAACAATTAGTTACAGTACACAGCTACGTCAAAATGCACCAAAACCTCTATACCTTCAGATGAAAAGCCTTGAAAGAAAATAATGACCAATTCAATTAGTCAGAGTCAAAAATAACATATGTCAAAGGTGGACCGAAAAATCAGCACCCGTAAAACCTGTATTAGAAAGGCTGGCCTTGTTTGAAAATTCCTCCAGGGGCCCTTCAATTAGAGGAGGCCCTGATATTATTCTTGTCA</canonical>
            <polymorphic>ATTTAGCAAGAACTACAGTAAGACAATCAGCTGATCTATTTCCAGAGATCAGAAAAGGAAGAATTGAAAAAAAATTGCTCATATGCCAGTCACAAAAACTACAAGCTTCCCAAGAGAGAGAGAGAGAGAGAGAGAGAAAACATGTGCGATTTTTGAAGGTTGTTGCGCTTCTCTAAATCTGGCTTCTTTCAAAATAACATTCTAGCAGAAAAAAGCGTTTGATCAAAAAAAGAAGGAGAAGAAGAGGGTACAAAGATTATGAAGAGGGTGGGGGCTAGTCGAGTGAGCAAAAATGGAAAAGAAGAGAGCAAAAACGGATCAAACGGATATTCTTGTGTCTATAGTTTAGAAAAAGATTGGATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAAWTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGAACAATTAGTTACAGTACACAGCTACGTCAAAATGCACCAAAACCTCTATACCTTCAGATGAAAAGCCTTGAAAGAAAATAATGACCAATTCAATTAGTCAGAGTCAAAAATAACATATGTCAAAGGTGGACCGAAAAATCAGCACCCGTAAAACCTGTATTAGAAAGGCTGGCCTTGTTTGAAAATTCCTCCAGGGGCCCTTCAATTAGAGGAGGCCCTGATATTATTCTTGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>391 122 92 84 84 61 43 32 21 20 20 14 11 5</canonical_bands>
                <polymorphic_bands>391 122 92 84 84 61 43 41 32 20 14 11 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGATTTCGAAGTTCAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCAAATCTCACCTATTTGTATGAC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>CAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGA</canonical_amplicon>
		<polymorphic_amplicon>CAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAAWTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8325</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>66829</contig_pos>
        <strand>+</strand>
        <context>AATAGAAGTA[A/G]WTACATGCwc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTA</left_flank>
        <right_flank>TTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTAGCAAGAACTACAGTAAGACAATCAGCTGATCTATTTCCAGAGATCAGAAAAGGAAGAATTGAAAAAAAATTGCTCATATGCCAGTCACAAAAACTACAAGCTTCCCAAGAGAGAGAGAGAGAGAGAGAGAGAAAACATGTGCGATTTTTGAAGGTTGTTGCGCTTCTCTAAATCTGGCTTCTTTCAAAATAACATTCTAGCAGAAAAAAGCGTTTGATCAAAAAAAGAAGGAGAAGAAGAGGGTACAAAGATTATGAAGAGGGTGGGGGCTAGTCGAGTGAGCAAAAATGGAAAAGAAGAGAGCAAAAACGGATCAAACGGATATTCTTGTGTCTATAGTTTAGAAAAAGATTGGATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGAACAATTAGTTACAGTACACAGCTACGTCAAAATGCACCAAAACCTCTATACCTTCAGATGAAAAGCCTTGAAAGAAAATAATGACCAATTCAATTAGTCAGAGTCAAAAATAACATATGTCAAAGGTGGACCGAAAAATCAGCACCCGTAAAACCTGTATTAGAAAGGCTGGCCTTGTTTGAAAATTCCTCCAGGGGCCCTTCAATTAGAGGAGGCCCTGATATTATTCTTGTC</canonical>
            <polymorphic>CATTTAGCAAGAACTACAGTAAGACAATCAGCTGATCTATTTCCAGAGATCAGAAAAGGAAGAATTGAAAAAAAATTGCTCATATGCCAGTCACAAAAACTACAAGCTTCCCAAGAGAGAGAGAGAGAGAGAGAGAGAAAACATGTGCGATTTTTGAAGGTTGTTGCGCTTCTCTAAATCTGGCTTCTTTCAAAATAACATTCTAGCAGAAAAAAGCGTTTGATCAAAAAAAGAAGGAGAAGAAGAGGGTACAAAGATTATGAAGAGGGTGGGGGCTAGTCGAGTGAGCAAAAATGGAAAAGAAGAGAGCAAAAACGGATCAAACGGATATTCTTGTGTCTATAGTTTAGAAAAAGATTGGATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTARTTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGAACAATTAGTTACAGTACACAGCTACGTCAAAATGCACCAAAACCTCTATACCTTCAGATGAAAAGCCTTGAAAGAAAATAATGACCAATTCAATTAGTCAGAGTCAAAAATAACATATGTCAAAGGTGGACCGAAAAATCAGCACCCGTAAAACCTGTATTAGAAAGGCTGGCCTTGTTTGAAAATTCCTCCAGGGGCCCTTCAATTAGAGGAGGCCCTGATATTATTCTTGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>391 122 92 84 84 62 43 31 21 20 20 14 11 5</canonical_bands>
                <polymorphic_bands>391 122 92 84 84 62 43 41 31 20 14 11 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGATTTCGAAGTTCAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCAAATCTCACCTATTTGTATGAC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>CAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGA</canonical_amplicon>
		<polymorphic_amplicon>CAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTARTTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8326</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>66802</contig_pos>
        <strand>+</strand>
        <context>TTAATTYCAG[A/G]TTACCAATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAG</left_flank>
        <right_flank>TTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTTGTTTTGGAAAAAAAATAATTCATTTAGCAAGAACTACAGTAAGACAATCAGCTGATCTATTTCCAGAGATCAGAAAAGGAAGAATTGAAAAAAAATTGCTCATATGCCAGTCACAAAAACTACAAGCTTCCCAAGAGAGAGAGAGAGAGAGAGAGAGAAAACATGTGCGATTTTTGAAGGTTGTTGCGCTTCTCTAAATCTGGCTTCTTTCAAAATAACATTCTAGCAGAAAAAAGCGTTTGATCAAAAAAAGAAGGAGAAGAAGAGGGTACAAAGATTATGAAGAGGGTGGGGGCTAGTCGAGTGAGCAAAAATGGAAAAGAAGAGAGCAAAAACGGATCAAACGGATATTCTTGTGTCTATAGTTTAGAAAAAGATTGGATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGAACAATTAGTTACAGTACACAGCTACGTCAAAATGCACCAAAACCTCTATACCTTCAGATGAAAAGCCTTGAAAGAAAATAATGACCAATTCAATTAGTCAGAGTCAAAAATAACATATGTCAAAGGTGGACCGAAAAATCAGCACCCGTAAAACCTGTATTAGAAAGGCTGGCCTTGTTTGAAAATTCCTCCAGGGGCCCTTCAATT</canonical>
            <polymorphic>TTTTTTTGTTTTGGAAAAAAAATAATTCATTTAGCAAGAACTACAGTAAGACAATCAGCTGATCTATTTCCAGAGATCAGAAAAGGAAGAATTGAAAAAAAATTGCTCATATGCCAGTCACAAAAACTACAAGCTTCCCAAGAGAGAGAGAGAGAGAGAGAGAGAAAACATGTGCGATTTTTGAAGGTTGTTGCGCTTCTCTAAATCTGGCTTCTTTCAAAATAACATTCTAGCAGAAAAAAGCGTTTGATCAAAAAAAGAAGGAGAAGAAGAGGGTACAAAGATTATGAAGAGGGTGGGGGCTAGTCGAGTGAGCAAAAATGGAAAAGAAGAGAGCAAAAACGGATCAAACGGATATTCTTGTGTCTATAGTTTAGAAAAAGATTGGATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGRTTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGAACAATTAGTTACAGTACACAGCTACGTCAAAATGCACCAAAACCTCTATACCTTCAGATGAAAAGCCTTGAAAGAAAATAATGACCAATTCAATTAGTCAGAGTCAAAAATAACATATGTCAAAGGTGGACCGAAAAATCAGCACCCGTAAAACCTGTATTAGAAAGGCTGGCCTTGTTTGAAAATTCCTCCAGGGGCCCTTCAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>504 338 88 70</canonical_bands>
                <polymorphic_bands>592 338 70</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTTTTTGAGGATTTTTCAGA</pcr_primer_p1>
		<pcr_primer_p2>ACCTATTTGTATGACTATCGTAACC</pcr_primer_p2>
		<pcr_amplicon_size>336</pcr_amplicon_size>
		<canonical_amplicon>ATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGT</canonical_amplicon>
		<polymorphic_amplicon>ATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGRTTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8327</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>66798</contig_pos>
        <strand>+</strand>
        <context>AACTTTAATT[C/T]CAGRTTACCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATT</left_flank>
        <right_flank>CAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTGTTTTTTTGTTTTGGAAAAAAAATAATTCATTTAGCAAGAACTACAGTAAGACAATCAGCTGATCTATTTCCAGAGATCAGAAAAGGAAGAATTGAAAAAAAATTGCTCATATGCCAGTCACAAAAACTACAAGCTTCCCAAGAGAGAGAGAGAGAGAGAGAGAGAAAACATGTGCGATTTTTGAAGGTTGTTGCGCTTCTCTAAATCTGGCTTCTTTCAAAATAACATTCTAGCAGAAAAAAGCGTTTGATCAAAAAAAGAAGGAGAAGAAGAGGGTACAAAGATTATGAAGAGGGTGGGGGCTAGTCGAGTGAGCAAAAATGGAAAAGAAGAGAGCAAAAACGGATCAAACGGATATTCTTGTGTCTATAGTTTAGAAAAAGATTGGATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGAACAATTAGTTACAGTACACAGCTACGTCAAAATGCACCAAAACCTCTATACCTTCAGATGAAAAGCCTTGAAAGAAAATAATGACCAATTCAATTAGTCAGAGTCAAAAATAACATATGTCAAAGGTGGACCGAAAAATCAGCACCCGTAAAACCTGTATTAGAAAGGCTGGCCTTGTTTGAAAATTCCTCCAGGGGCCCTTC</canonical>
            <polymorphic>GTTGTTTTTTTGTTTTGGAAAAAAAATAATTCATTTAGCAAGAACTACAGTAAGACAATCAGCTGATCTATTTCCAGAGATCAGAAAAGGAAGAATTGAAAAAAAATTGCTCATATGCCAGTCACAAAAACTACAAGCTTCCCAAGAGAGAGAGAGAGAGAGAGAGAGAAAACATGTGCGATTTTTGAAGGTTGTTGCGCTTCTCTAAATCTGGCTTCTTTCAAAATAACATTCTAGCAGAAAAAAGCGTTTGATCAAAAAAAGAAGGAGAAGAAGAGGGTACAAAGATTATGAAGAGGGTGGGGGCTAGTCGAGTGAGCAAAAATGGAAAAGAAGAGAGCAAAAACGGATCAAACGGATATTCTTGTGTCTATAGTTTAGAAAAAGATTGGATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTYCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGAACAATTAGTTACAGTACACAGCTACGTCAAAATGCACCAAAACCTCTATACCTTCAGATGAAAAGCCTTGAAAGAAAATAATGACCAATTCAATTAGTCAGAGTCAAAAATAACATATGTCAAAGGTGGACCGAAAAATCAGCACCCGTAAAACCTGTATTAGAAAGGCTGGCCTTGTTTGAAAATTCCTCCAGGGGCCCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>500 338 88 74</canonical_bands>
                <polymorphic_bands>588 338 74</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGAGTTTGAAAACAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>ACCTATTTGTATGACTATCGTAACC</pcr_primer_p2>
		<pcr_amplicon_size>368</pcr_amplicon_size>
		<canonical_amplicon>GAGGAGTTTGAAAACAAGGAGATGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGT</canonical_amplicon>
		<polymorphic_amplicon>GAGGAGTTTGAAAACAAGGAGATGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTYCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8328</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>66750</contig_pos>
        <strand>+</strand>
        <context>RTGAAACCAG[A/G]ATGTTTTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAG</left_flank>
        <right_flank>ATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACCATTCAACTTTTTTTGGATCTGGTTTGATAGGATTCAGCGAAAAAGTTGTTTTTTTGTTTTGGAAAAAAAATAATTCATTTAGCAAGAACTACAGTAAGACAATCAGCTGATCTATTTCCAGAGATCAGAAAAGGAAGAATTGAAAAAAAATTGCTCATATGCCAGTCACAAAAACTACAAGCTTCCCAAGAGAGAGAGAGAGAGAGAGAGAGAAAACATGTGCGATTTTTGAAGGTTGTTGCGCTTCTCTAAATCTGGCTTCTTTCAAAATAACATTCTAGCAGAAAAAAGCGTTTGATCAAAAAAAGAAGGAGAAGAAGAGGGTACAAAGATTATGAAGAGGGTGGGGGCTAGTCGAGTGAGCAAAAATGGAAAAGAAGAGAGCAAAAACGGATCAAACGGATATTCTTGTGTCTATAGTTTAGAAAAAGATTGGATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGAACAATTAGTTACAGTACACAGCTACGTCAAAATGCACCAAAACCTCTATACCTTCAGATGAAAAGCCTTGAAAGAAAATAATGACCAATTCAATTAGTCAGAGTCAAAAATAACATATGTCAAAGGTGGACCGAAAAATCAGCACCCGTAAAACC</canonical>
            <polymorphic>GACCATTCAACTTTTTTTGGATCTGGTTTGATAGGATTCAGCGAAAAAGTTGTTTTTTTGTTTTGGAAAAAAAATAATTCATTTAGCAAGAACTACAGTAAGACAATCAGCTGATCTATTTCCAGAGATCAGAAAAGGAAGAATTGAAAAAAAATTGCTCATATGCCAGTCACAAAAACTACAAGCTTCCCAAGAGAGAGAGAGAGAGAGAGAGAGAAAACATGTGCGATTTTTGAAGGTTGTTGCGCTTCTCTAAATCTGGCTTCTTTCAAAATAACATTCTAGCAGAAAAAAGCGTTTGATCAAAAAAAGAAGGAGAAGAAGAGGGTACAAAGATTATGAAGAGGGTGGGGGCTAGTCGAGTGAGCAAAAATGGAAAAGAAGAGAGCAAAAACGGATCAAACGGATATTCTTGTGTCTATAGTTTAGAAAAAGATTGGATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAGRATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGAACAATTAGTTACAGTACACAGCTACGTCAAAATGCACCAAAACCTCTATACCTTCAGATGAAAAGCCTTGAAAGAAAATAATGACCAATTCAATTAGTCAGAGTCAAAAATAACATATGTCAAAGGTGGACCGAAAAATCAGCACCCGTAAAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCACGTATTCTGGAGTTG</pcr_primer_p1>
		<pcr_primer_p2>ACCTATTTGTATGACTATCGTAACC</pcr_primer_p2>
		<pcr_amplicon_size>389</pcr_amplicon_size>
		<canonical_amplicon>TTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAGRATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8334</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>70417</contig_pos>
        <strand>+</strand>
        <context>ATACTGAACT[C/T]TCCAGCTACG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGAACT</left_flank>
        <right_flank>TCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAGCATTTTCCAGACAAAAAAGACCACTGGGGACCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGGTTTTTCAATTTTTATTCCTTATTCGTTATTCCTTATTCCTTCGAACAATTAAAAATTTGAAATTTAAAATTAGAAAAAAACGCTTTCTAAACCTAAACTACCACTTAAAAAGTCGTTTAATGAAGCCTAAATTCCTCTTTTATACGTTTTATCAAAAAATTTCAAAACGCATTCGGCTTTTTTCGAAATTTTGTTCCGTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTACTCCTTGTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTA</canonical>
            <polymorphic>AAGAGCATTTTCCAGACAAAAAAGACCACTGGGGACCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGGTTTTTCAATTTTTATTCCTTATTCGTTATTCCTTATTCCTTCGAACAATTAAAAATTTGAAATTTAAAATTAGAAAAAAACGCTTTCTAAACCTAAACTACCACTTAAAAAGTCGTTTAATGAAGCCTAAATTCCTCTTTTATACGTTTTATCAAAAAATTTCAAAACGCATTCGGCTTTTTTCGAAATTTTGTTCCGTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTACTCCTTGTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGAACTYTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTTCAAAACGCATTC</pcr_primer_p1>
		<pcr_primer_p2>AGTTAAACCCCAACATGAACT</pcr_primer_p2>
		<pcr_amplicon_size>451</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTTCAAAACGCATTCGGCTTTTTTCGAAATTTTGTTCCGTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTACTCCTTGTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTTCAAAACGCATTCGGCTTTTTTCGAAATTTTGTTCCGTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTACTCCTTGTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGAACTYTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8335</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>70754</contig_pos>
        <strand>+</strand>
        <context>CTCTGTTGTA[C/T]TTTCAAGTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTA</left_flank>
        <right_flank>TTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTACTCCTTGTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGAAAAAGTGACTCAACGTTCTCAAGCTGCTACCAGGAAGTGAAATTTTCAGAACGATTTCTTATCACAGTATCAGAAAACAAACTCGGCAAGATAAAAGAGGGAGAAAACCCTGAAGTTTGAATGACATACCTAAAGCATGATGGACGCAACCTTCTACAAAAATATTTGCTAGTCTGAAAATCTAAAT</canonical>
            <polymorphic>TCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTACTCCTTGTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTAYTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGAAAAAGTGACTCAACGTTCTCAAGCTGCTACCAGGAAGTGAAATTTTCAGAACGATTTCTTATCACAGTATCAGAAAACAAACTCGGCAAGATAAAAGAGGGAGAAAACCCTGAAGTTTGAATGACATACCTAAAGCATGATGGACGCAACCTTCTACAAAAATATTTGCTAGTCTGAAAATCTAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTTGGGGTTTAACTTTCTTTA</pcr_primer_p1>
		<pcr_primer_p2>ATTTGCGTGTATTGGTGTAAG</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTAYTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8336</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>70698</contig_pos>
        <strand>+</strand>
        <context>ATCAATTAAG[C/G]AGCTAAAGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAG</left_flank>
        <right_flank>AGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTCAAAACGCATTCGGCTTTTTTCGAAATTTTGTTCCGTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTACTCCTTGTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGAAAAAGTGACTCAACGTTCTCAAGCTGCTACCAGGAAGTGAAATTTTCAGAACGATTTCTTATCACAGTATCAGAAAACAAACTCGGCAAGATAAAAGAGGGAGAAAACCCTGAAGTTTGAATGACATACCT</canonical>
            <polymorphic>AAATTTCAAAACGCATTCGGCTTTTTTCGAAATTTTGTTCCGTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTACTCCTTGTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGSAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGAAAAAGTGACTCAACGTTCTCAAGCTGCTACCAGGAAGTGAAATTTTCAGAACGATTTCTTATCACAGTATCAGAAAACAAACTCGGCAAGATAAAAGAGGGAGAAAACCCTGAAGTTTGAATGACATACCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>502 393 105</canonical_bands>
                <polymorphic_bands>895 105</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>499 393 108</canonical_bands>
                <polymorphic_bands>892 108</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTTGGGGTTTAACTTTCTTTA</pcr_primer_p1>
		<pcr_primer_p2>ATTTGCGTGTATTGGTGTAAG</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGSAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8338</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>70847</contig_pos>
        <strand>+</strand>
        <context>CATATTCTCT[A/T]ACCTTACACC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCT</left_flank>
        <right_flank>ACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGAAAAAGTGACTCAACGTTCTCAAGCTGCTACCAGGAAGTGAAATTTTCAGAACGATTTCTTATCACAGTATCAGAAAACAAACTCGGCAAGATAAAAGAGGGAGAAAACCCTGAAGTTTGAATGACATACCTAAAGCATGATGGACGCAACCTTCTACAAAAATATTTGCTAGTCTGAAAATCTAAATCCAGGAATTTCTCTCTATTTAAAGACAACGCCCAACTCCGCCCTTCTAATCCGGTGCACCCAGAAACTGGGCGGGGCCTGTAGTACTAGATCA</canonical>
            <polymorphic>AGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTWACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGAAAAAGTGACTCAACGTTCTCAAGCTGCTACCAGGAAGTGAAATTTTCAGAACGATTTCTTATCACAGTATCAGAAAACAAACTCGGCAAGATAAAAGAGGGAGAAAACCCTGAAGTTTGAATGACATACCTAAAGCATGATGGACGCAACCTTCTACAAAAATATTTGCTAGTCTGAAAATCTAAATCCAGGAATTTCTCTCTATTTAAAGACAACGCCCAACTCCGCCCTTCTAATCCGGTGCACCCAGAAACTGGGCGGGGCCTGTAGTACTAGATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTAAAAGTCAGCTCTGTTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTCAATTCTCTGCGTGATG</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>CCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAAT</canonical_amplicon>
		<polymorphic_amplicon>CCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTWACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8339</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>70904</contig_pos>
        <strand>+</strand>
        <context>GCCCAATCTT[C/G]CGAAAAAWTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTT</left_flank>
        <right_flank>CGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGAAAAAGTGACTCAACGTTCTCAAGCTGCTACCAGGAAGTGAAATTTTCAGAACGATTTCTTATCACAGTATCAGAAAACAAACTCGGCAAGATAAAAGAGGGAGAAAACCCTGAAGTTTGAATGACATACCTAAAGCATGATGGACGCAACCTTCTACAAAAATATTTGCTAGTCTGAAAATCTAAATCCAGGAATTTCTCTCTATTTAAAGACAACGCCCAACTCCGCCCTTCTAATCCGGTGCACCCAGAAACTGGGCGGGGCCTGTAGTACTAGATCAAAATGTGATAACATCTGTTTGACAAAGCTACATACACACAACGAGACTGTCCGATAA</canonical>
            <polymorphic>AGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTSCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGAAAAAGTGACTCAACGTTCTCAAGCTGCTACCAGGAAGTGAAATTTTCAGAACGATTTCTTATCACAGTATCAGAAAACAAACTCGGCAAGATAAAAGAGGGAGAAAACCCTGAAGTTTGAATGACATACCTAAAGCATGATGGACGCAACCTTCTACAAAAATATTTGCTAGTCTGAAAATCTAAATCCAGGAATTTCTCTCTATTTAAAGACAACGCCCAACTCCGCCCTTCTAATCCGGTGCACCCAGAAACTGGGCGGGGCCTGTAGTACTAGATCAAAATGTGATAACATCTGTTTGACAAAGCTACATACACACAACGAGACTGTCCGATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>485 210 157 103 24 16 5</canonical_bands>
                <polymorphic_bands>485 226 157 103 24 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCGTATCCTCATTAACAACATA</pcr_primer_p1>
		<pcr_primer_p2>TCGGCTAACAAAACTATTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGA</canonical_amplicon>
		<polymorphic_amplicon>ACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTSCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8340</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>70912</contig_pos>
        <strand>+</strand>
        <context>TTSCGAAAAA[A/T]TTTWAAAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAA</left_flank>
        <right_flank>TTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGAAAAAGTGACTCAACGTTCTCAAGCTGCTACCAGGAAGTGAAATTTTCAGAACGATTTCTTATCACAGTATCAGAAAACAAACTCGGCAAGATAAAAGAGGGAGAAAACCCTGAAGTTTGAATGACATACCTAAAGCATGATGGACGCAACCTTCTACAAAAATATTTGCTAGTCTGAAAATCTAAATCCAGGAATTTCTCTCTATTTAAAGACAACGCCCAACTCCGCCCTTCTAATCCGGTGCACCCAGAAACTGGGCGGGGCCTGTAGTACTAGATCAAAATGTGATAACATCTGTTTGACAAAGCTACATACACACAACGAGACTGTCCGATAAGACAATGT</canonical>
            <polymorphic>AACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAWTTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGAAAAAGTGACTCAACGTTCTCAAGCTGCTACCAGGAAGTGAAATTTTCAGAACGATTTCTTATCACAGTATCAGAAAACAAACTCGGCAAGATAAAAGAGGGAGAAAACCCTGAAGTTTGAATGACATACCTAAAGCATGATGGACGCAACCTTCTACAAAAATATTTGCTAGTCTGAAAATCTAAATCCAGGAATTTCTCTCTATTTAAAGACAACGCCCAACTCCGCCCTTCTAATCCGGTGCACCCAGAAACTGGGCGGGGCCTGTAGTACTAGATCAAAATGTGATAACATCTGTTTGACAAAGCTACATACACACAACGAGACTGTCCGATAAGACAATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>498 153 152 113 43 41</canonical_bands>
                <polymorphic_bands>539 153 152 113 43</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>230 220 153 152 113 48 41 38 5</canonical_bands>
                <polymorphic_bands>261 230 153 152 113 48 38 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCGTATCCTCATTAACAACATA</pcr_primer_p1>
		<pcr_primer_p2>TCGGCTAACAAAACTATTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGA</canonical_amplicon>
		<polymorphic_amplicon>ACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAWTTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8341</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>70916</contig_pos>
        <strand>+</strand>
        <context>GAAAAAWTTT[A/T]AAAGAATCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTT</left_flank>
        <right_flank>AAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGAAAAAGTGACTCAACGTTCTCAAGCTGCTACCAGGAAGTGAAATTTTCAGAACGATTTCTTATCACAGTATCAGAAAACAAACTCGGCAAGATAAAAGAGGGAGAAAACCCTGAAGTTTGAATGACATACCTAAAGCATGATGGACGCAACCTTCTACAAAAATATTTGCTAGTCTGAAAATCTAAATCCAGGAATTTCTCTCTATTTAAAGACAACGCCCAACTCCGCCCTTCTAATCCGGTGCACCCAGAAACTGGGCGGGGCCTGTAGTACTAGATCAAAATGTGATAACATCTGTTTGACAAAGCTACATACACACAACGAGACTGTCCGATAAGACAATGTTCCT</canonical>
            <polymorphic>CTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTWAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGAAAAAGTGACTCAACGTTCTCAAGCTGCTACCAGGAAGTGAAATTTTCAGAACGATTTCTTATCACAGTATCAGAAAACAAACTCGGCAAGATAAAAGAGGGAGAAAACCCTGAAGTTTGAATGACATACCTAAAGCATGATGGACGCAACCTTCTACAAAAATATTTGCTAGTCTGAAAATCTAAATCCAGGAATTTCTCTCTATTTAAAGACAACGCCCAACTCCGCCCTTCTAATCCGGTGCACCCAGAAACTGGGCGGGGCCTGTAGTACTAGATCAAAATGTGATAACATCTGTTTGACAAAGCTACATACACACAACGAGACTGTCCGATAAGACAATGTTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 358 142</canonical_bands>
                <polymorphic_bands>858 142</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>358 143 95 85 75 63 51 40 34 31 25</canonical_bands>
                <polymorphic_bands>443 143 95 75 63 51 40 34 31 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCGTATCCTCATTAACAACATA</pcr_primer_p1>
		<pcr_primer_p2>TCGGCTAACAAAACTATTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGA</canonical_amplicon>
		<polymorphic_amplicon>ACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTWAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8342</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>70964</contig_pos>
        <strand>+</strand>
        <context>TTTAGCGGGA[G/T]AAGATCGCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGA</left_flank>
        <right_flank>AAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGAAAAAGTGACTCAACGTTCTCAAGCTGCTACCAGGAAGTGAAATTTTCAGAACGATTTCTTATCACAGTATCAGAAAACAAACTCGGCAAGATAAAAGAGGGAGAAAACCCTGAAGTTTGAATGACATACCTAAAGCATGATGGACGCAACCTTCTACAAAAATATTTGCTAGTCTGAAAATCTAAATCCAGGAATTTCTCTCTATTTAAAGACAACGCCCAACTCCGCCCTTCTAATCCGGTGCACCCAGAAACTGGGCGGGGCCTGTAGTACTAGATCAAAATGTGATAACATCTGTTTGACAAAGCTACATACACACAACGAGACTGTCCGATAAGACAATGTTCCTGGATACGTTCCGTCTTTTGTGTTTTGAATAGGTGTACGCGGGGAAGAA</canonical>
            <polymorphic>TATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGAKAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGAAAAAGTGACTCAACGTTCTCAAGCTGCTACCAGGAAGTGAAATTTTCAGAACGATTTCTTATCACAGTATCAGAAAACAAACTCGGCAAGATAAAAGAGGGAGAAAACCCTGAAGTTTGAATGACATACCTAAAGCATGATGGACGCAACCTTCTACAAAAATATTTGCTAGTCTGAAAATCTAAATCCAGGAATTTCTCTCTATTTAAAGACAACGCCCAACTCCGCCCTTCTAATCCGGTGCACCCAGAAACTGGGCGGGGCCTGTAGTACTAGATCAAAATGTGATAACATCTGTTTGACAAAGCTACATACACACAACGAGACTGTCCGATAAGACAATGTTCCTGGATACGTTCCGTCTTTTGTGTTTTGAATAGGTGTACGCGGGGAAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCGTATCCTCATTAACAACATA</pcr_primer_p1>
		<pcr_primer_p2>TCGGCTAACAAAACTATTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGA</canonical_amplicon>
		<polymorphic_amplicon>ACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGAKAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8343</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>70977</contig_pos>
        <strand>+</strand>
        <context>GATCGCACAT[A/T]CATCACGCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACAT</left_flank>
        <right_flank>CATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGAAAAAGTGACTCAACGTTCTCAAGCTGCTACCAGGAAGTGAAATTTTCAGAACGATTTCTTATCACAGTATCAGAAAACAAACTCGGCAAGATAAAAGAGGGAGAAAACCCTGAAGTTTGAATGACATACCTAAAGCATGATGGACGCAACCTTCTACAAAAATATTTGCTAGTCTGAAAATCTAAATCCAGGAATTTCTCTCTATTTAAAGACAACGCCCAACTCCGCCCTTCTAATCCGGTGCACCCAGAAACTGGGCGGGGCCTGTAGTACTAGATCAAAATGTGATAACATCTGTTTGACAAAGCTACATACACACAACGAGACTGTCCGATAAGACAATGTTCCTGGATACGTTCCGTCTTTTGTGTTTTGAATAGGTGTACGCGGGGAAGAAGGATGAAGCGGGG</canonical>
            <polymorphic>GTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATWCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGAAAAAGTGACTCAACGTTCTCAAGCTGCTACCAGGAAGTGAAATTTTCAGAACGATTTCTTATCACAGTATCAGAAAACAAACTCGGCAAGATAAAAGAGGGAGAAAACCCTGAAGTTTGAATGACATACCTAAAGCATGATGGACGCAACCTTCTACAAAAATATTTGCTAGTCTGAAAATCTAAATCCAGGAATTTCTCTCTATTTAAAGACAACGCCCAACTCCGCCCTTCTAATCCGGTGCACCCAGAAACTGGGCGGGGCCTGTAGTACTAGATCAAAATGTGATAACATCTGTTTGACAAAGCTACATACACACAACGAGACTGTCCGATAAGACAATGTTCCTGGATACGTTCCGTCTTTTGTGTTTTGAATAGGTGTACGCGGGGAAGAAGGATGAAGCGGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCGTATCCTCATTAACAACATA</pcr_primer_p1>
		<pcr_primer_p2>TCGGCTAACAAAACTATTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGA</canonical_amplicon>
		<polymorphic_amplicon>ACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATWCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8344</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>72512</contig_pos>
        <strand>+</strand>
        <context>TTTATGCTAC[A/G]AGTACAGTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTAC</left_flank>
        <right_flank>AGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTT</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGAAAAAAACAAGCGTTCTTTGGAAATCGGCAAATAGCTGAAAAATTAGGGATTTTCAAAAAGTGATCGGACACTTGACAACCGAGCTACAGATTCCTGAAAATGGTCAAAATGGCTCAAAATTCATTGAAAAATACGTTGTTGTATATCTTATTGACTCTTGAGTTCAAAAAACTAAAGATTCTGACTGCAAATTTGAAAAAAAAGTTTCTTGGAAAAATAGTAGTGCCCATTTGAATCAGCTTATTTTATAAAACCAGAATTAAGCCCTGGCTCGGCAAATGAAATCTGTAAAATTGAAACTTGAGCGATCAAAAGAAAAAAAAACAGATGAAAGTCTTATGAATTCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAGTAGTCTTTGTTTTTGTTAATCGCTGTAGAACTGGAAACAGTTTGAGGAACCGAAAAATGAATAACAAGAATTTTCCAGGTCGGAAAATGTTGTTTTTTCTTTTCGTTCTCTAGGTTTTTGAAAAGTAGGTAAAAATATGTTTTTTAGTCTTGAAAATATTTCAATTTTGAAAATAAAAAACTGATTATACAACAAGAAACAAAATGTTCCAACACATTGTGAACTGTGTCAACTGGGGGGAGAAGAAATCACCGTCAACCCACTCATTCGAAAATCAACAATAGACTGAGAGAGAAAGAAAAGAGCAAACAGCTAACAAAACACTCACAGATCACTGCT</canonical>
            <polymorphic>AAATGAAAAAAACAAGCGTTCTTTGGAAATCGGCAAATAGCTGAAAAATTAGGGATTTTCAAAAAGTGATCGGACACTTGACAACCGAGCTACAGATTCCTGAAAATGGTCAAAATGGCTCAAAATTCATTGAAAAATACGTTGTTGTATATCTTATTGACTCTTGAGTTCAAAAAACTAAAGATTCTGACTGCAAATTTGAAAAAAAAGTTTCTTGGAAAAATAGTAGTGCCCATTTGAATCAGCTTATTTTATAAAACCAGAATTAAGCCCTGGCTCGGCAAATGAAATCTGTAAAATTGAAACTTGAGCGATCAAAAGAAAAAAAAACAGATGAAAGTCTTATGAATTCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACRAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAGTAGTCTTTGTTTTTGTTAATCGCTGTAGAACTGGAAACAGTTTGAGGAACCGAAAAATGAATAACAAGAATTTTCCAGGTCGGAAAATGTTGTTTTTTCTTTTCGTTCTCTAGGTTTTTGAAAAGTAGGTAAAAATATGTTTTTTAGTCTTGAAAATATTTCAATTTTGAAAATAAAAAACTGATTATACAACAAGAAACAAAATGTTCCAACACATTGTGAACTGTGTCAACTGGGGGGAGAAGAAATCACCGTCAACCCACTCATTCGAAAATCAACAATAGACTGAGAGAGAAAGAAAAGAGCAAACAGCTAACAAAACACTCACAGATCACTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCATAGAATCAGGGTTAATTG</pcr_primer_p1>
		<pcr_primer_p2>AAAGATCATTATTTGACCAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTT</canonical_amplicon>
		<polymorphic_amplicon>TCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACRAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8345</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>72463</contig_pos>
        <strand>+</strand>
        <context>CATAWATAGG[C/T]AACAACCTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGG</left_flank>
        <right_flank>AACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTGCGAATTTCTGAAAGTCACCCTTTTCCCCTTTTTTTTGTACTGAAAAATGAAAAAAACAAGCGTTCTTTGGAAATCGGCAAATAGCTGAAAAATTAGGGATTTTCAAAAAGTGATCGGACACTTGACAACCGAGCTACAGATTCCTGAAAATGGTCAAAATGGCTCAAAATTCATTGAAAAATACGTTGTTGTATATCTTATTGACTCTTGAGTTCAAAAAACTAAAGATTCTGACTGCAAATTTGAAAAAAAAGTTTCTTGGAAAAATAGTAGTGCCCATTTGAATCAGCTTATTTTATAAAACCAGAATTAAGCCCTGGCTCGGCAAATGAAATCTGTAAAATTGAAACTTGAGCGATCAAAAGAAAAAAAAACAGATGAAAGTCTTATGAATTCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAGTAGTCTTTGTTTTTGTTAATCGCTGTAGAACTGGAAACAGTTTGAGGAACCGAAAAATGAATAACAAGAATTTTCCAGGTCGGAAAATGTTGTTTTTTCTTTTCGTTCTCTAGGTTTTTGAAAAGTAGGTAAAAATATGTTTTTTAGTCTTGAAAATATTTCAATTTTGAAAATAAAAAACTGATTATACAACAAGAAACAAAATGTTCCAACACATTGTGAACTGTGTCAACTGGGGGGAGAAGAAATCACCGTCAACCCACTCATTCGAAAATCAACAATAGACTGAG</canonical>
            <polymorphic>ATTTGCGAATTTCTGAAAGTCACCCTTTTCCCCTTTTTTTTGTACTGAAAAATGAAAAAAACAAGCGTTCTTTGGAAATCGGCAAATAGCTGAAAAATTAGGGATTTTCAAAAAGTGATCGGACACTTGACAACCGAGCTACAGATTCCTGAAAATGGTCAAAATGGCTCAAAATTCATTGAAAAATACGTTGTTGTATATCTTATTGACTCTTGAGTTCAAAAAACTAAAGATTCTGACTGCAAATTTGAAAAAAAAGTTTCTTGGAAAAATAGTAGTGCCCATTTGAATCAGCTTATTTTATAAAACCAGAATTAAGCCCTGGCTCGGCAAATGAAATCTGTAAAATTGAAACTTGAGCGATCAAAAGAAAAAAAAACAGATGAAAGTCTTATGAATTCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGYAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAGTAGTCTTTGTTTTTGTTAATCGCTGTAGAACTGGAAACAGTTTGAGGAACCGAAAAATGAATAACAAGAATTTTCCAGGTCGGAAAATGTTGTTTTTTCTTTTCGTTCTCTAGGTTTTTGAAAAGTAGGTAAAAATATGTTTTTTAGTCTTGAAAATATTTCAATTTTGAAAATAAAAAACTGATTATACAACAAGAAACAAAATGTTCCAACACATTGTGAACTGTGTCAACTGGGGGGAGAAGAAATCACCGTCAACCCACTCATTCGAAAATCAACAATAGACTGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 480 18</canonical_bands>
                <polymorphic_bands>982 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCATAGAATCAGGGTTAATTG</pcr_primer_p1>
		<pcr_primer_p2>AAAGATCATTATTTGACCAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTT</canonical_amplicon>
		<polymorphic_amplicon>TCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGYAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8346</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>72457</contig_pos>
        <strand>+</strand>
        <context>TGTATACATA[A/T]ATAGGYAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATA</left_flank>
        <right_flank>ATAGGTAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATG</right_flank>
        <qual_score>145</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGATATTTGCGAATTTCTGAAAGTCACCCTTTTCCCCTTTTTTTTGTACTGAAAAATGAAAAAAACAAGCGTTCTTTGGAAATCGGCAAATAGCTGAAAAATTAGGGATTTTCAAAAAGTGATCGGACACTTGACAACCGAGCTACAGATTCCTGAAAATGGTCAAAATGGCTCAAAATTCATTGAAAAATACGTTGTTGTATATCTTATTGACTCTTGAGTTCAAAAAACTAAAGATTCTGACTGCAAATTTGAAAAAAAAGTTTCTTGGAAAAATAGTAGTGCCCATTTGAATCAGCTTATTTTATAAAACCAGAATTAAGCCCTGGCTCGGCAAATGAAATCTGTAAAATTGAAACTTGAGCGATCAAAAGAAAAAAAAACAGATGAAAGTCTTATGAATTCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAGTAGTCTTTGTTTTTGTTAATCGCTGTAGAACTGGAAACAGTTTGAGGAACCGAAAAATGAATAACAAGAATTTTCCAGGTCGGAAAATGTTGTTTTTTCTTTTCGTTCTCTAGGTTTTTGAAAAGTAGGTAAAAATATGTTTTTTAGTCTTGAAAATATTTCAATTTTGAAAATAAAAAACTGATTATACAACAAGAAACAAAATGTTCCAACACATTGTGAACTGTGTCAACTGGGGGGAGAAGAAATCACCGTCAACCCACTCATTCGAAAATCAACAATAG</canonical>
            <polymorphic>TCAGATATTTGCGAATTTCTGAAAGTCACCCTTTTCCCCTTTTTTTTGTACTGAAAAATGAAAAAAACAAGCGTTCTTTGGAAATCGGCAAATAGCTGAAAAATTAGGGATTTTCAAAAAGTGATCGGACACTTGACAACCGAGCTACAGATTCCTGAAAATGGTCAAAATGGCTCAAAATTCATTGAAAAATACGTTGTTGTATATCTTATTGACTCTTGAGTTCAAAAAACTAAAGATTCTGACTGCAAATTTGAAAAAAAAGTTTCTTGGAAAAATAGTAGTGCCCATTTGAATCAGCTTATTTTATAAAACCAGAATTAAGCCCTGGCTCGGCAAATGAAATCTGTAAAATTGAAACTTGAGCGATCAAAAGAAAAAAAAACAGATGAAAGTCTTATGAATTCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAWATAGGTAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAGTAGTCTTTGTTTTTGTTAATCGCTGTAGAACTGGAAACAGTTTGAGGAACCGAAAAATGAATAACAAGAATTTTCCAGGTCGGAAAATGTTGTTTTTTCTTTTCGTTCTCTAGGTTTTTGAAAAGTAGGTAAAAATATGTTTTTTAGTCTTGAAAATATTTCAATTTTGAAAATAAAAAACTGATTATACAACAAGAAACAAAATGTTCCAACACATTGTGAACTGTGTCAACTGGGGGGAGAAGAAATCACCGTCAACCCACTCATTCGAAAATCAACAATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCATAGAATCAGGGTTAATTG</pcr_primer_p1>
		<pcr_primer_p2>AAAGATCATTATTTGACCAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTT</canonical_amplicon>
		<polymorphic_amplicon>TCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAWATAGGTAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8347</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>72385</contig_pos>
        <strand>+</strand>
        <context>GGGTTAATTG[A/G]AAGACCGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAAAACAGATGAAAGTCTTATGAATTCCATAGAATCAGGGTTAATTG</left_flank>
        <right_flank>AAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTGGAGAGTGTGATACAGACCTAGATTGAAAACTTTGCTTTTACAGAATTTTTTGGAAATTCCTAGTTTTTCAGATATTTGCGAATTTCTGAAAGTCACCCTTTTCCCCTTTTTTTTGTACTGAAAAATGAAAAAAACAAGCGTTCTTTGGAAATCGGCAAATAGCTGAAAAATTAGGGATTTTCAAAAAGTGATCGGACACTTGACAACCGAGCTACAGATTCCTGAAAATGGTCAAAATGGCTCAAAATTCATTGAAAAATACGTTGTTGTATATCTTATTGACTCTTGAGTTCAAAAAACTAAAGATTCTGACTGCAAATTTGAAAAAAAAGTTTCTTGGAAAAATAGTAGTGCCCATTTGAATCAGCTTATTTTATAAAACCAGAATTAAGCCCTGGCTCGGCAAATGAAATCTGTAAAATTGAAACTTGAGCGATCAAAAGAAAAAAAAACAGATGAAAGTCTTATGAATTCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAGTAGTCTTTGTTTTTGTTAATCGCTGTAGAACTGGAAACAGTTTGAGGAACCGAAAAATGAATAACAAGAATTTTCCAGGTCGGAAAATGTTGTTTTTTCTTTTCGTTCTCTAGGTTTTTGAAAAGTAGGTAAAAATATGTTTTTTAGTCTTGAAAATATTTCAATTTTGAAAATAAAAAACTGATTATACAACAAGAAACAAAATGTTCCAA</canonical>
            <polymorphic>CTTTGGAGAGTGTGATACAGACCTAGATTGAAAACTTTGCTTTTACAGAATTTTTTGGAAATTCCTAGTTTTTCAGATATTTGCGAATTTCTGAAAGTCACCCTTTTCCCCTTTTTTTTGTACTGAAAAATGAAAAAAACAAGCGTTCTTTGGAAATCGGCAAATAGCTGAAAAATTAGGGATTTTCAAAAAGTGATCGGACACTTGACAACCGAGCTACAGATTCCTGAAAATGGTCAAAATGGCTCAAAATTCATTGAAAAATACGTTGTTGTATATCTTATTGACTCTTGAGTTCAAAAAACTAAAGATTCTGACTGCAAATTTGAAAAAAAAGTTTCTTGGAAAAATAGTAGTGCCCATTTGAATCAGCTTATTTTATAAAACCAGAATTAAGCCCTGGCTCGGCAAATGAAATCTGTAAAATTGAAACTTGAGCGATCAAAAGAAAAAAAAACAGATGAAAGTCTTATGAATTCCATAGAATCAGGGTTAATTGRAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAGTAGTCTTTGTTTTTGTTAATCGCTGTAGAACTGGAAACAGTTTGAGGAACCGAAAAATGAATAACAAGAATTTTCCAGGTCGGAAAATGTTGTTTTTTCTTTTCGTTCTCTAGGTTTTTGAAAAGTAGGTAAAAATATGTTTTTTAGTCTTGAAAATATTTCAATTTTGAAAATAAAAAACTGATTATACAACAAGAAACAAAATGTTCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAGTAGTGCCCATTTGAATC</pcr_primer_p1>
		<pcr_primer_p2>GGAAAAGTGGTTTAGGTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATAGTAGTGCCCATTTGAATCAGCTTATTTTATAAAACCAGAATTAAGCCCTGGCTCGGCAAATGAAATCTGTAAAATTGAAACTTGAGCGATCAAAAGAAAAAAAAACAGATGAAAGTCTTATGAATTCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCC</canonical_amplicon>
		<polymorphic_amplicon>AATAGTAGTGCCCATTTGAATCAGCTTATTTTATAAAACCAGAATTAAGCCCTGGCTCGGCAAATGAAATCTGTAAAATTGAAACTTGAGCGATCAAAAGAAAAAAAAACAGATGAAAGTCTTATGAATTCCATAGAATCAGGGTTAATTGRAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8348</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>72331</contig_pos>
        <strand>+</strand>
        <context>GAGCGATCAA[A/T]AGAAAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGCCCTGGCTCGGCAAATGAAATCTGTAAAATTGAAACTTGAGCGATCAA</left_flank>
        <right_flank>AGAAAAAAAAACAGATGAAAGTCTTATGAATTCCATAGAATCAGGGTTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCATTTTCAGGAGTCTGAAGCTCGGCTGTCAAGTTTTCGATCAATTCGAAAACTTTGGAGAGTGTGATACAGACCTAGATTGAAAACTTTGCTTTTACAGAATTTTTTGGAAATTCCTAGTTTTTCAGATATTTGCGAATTTCTGAAAGTCACCCTTTTCCCCTTTTTTTTGTACTGAAAAATGAAAAAAACAAGCGTTCTTTGGAAATCGGCAAATAGCTGAAAAATTAGGGATTTTCAAAAAGTGATCGGACACTTGACAACCGAGCTACAGATTCCTGAAAATGGTCAAAATGGCTCAAAATTCATTGAAAAATACGTTGTTGTATATCTTATTGACTCTTGAGTTCAAAAAACTAAAGATTCTGACTGCAAATTTGAAAAAAAAGTTTCTTGGAAAAATAGTAGTGCCCATTTGAATCAGCTTATTTTATAAAACCAGAATTAAGCCCTGGCTCGGCAAATGAAATCTGTAAAATTGAAACTTGAGCGATCAAAAGAAAAAAAAACAGATGAAAGTCTTATGAATTCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAGTAGTCTTTGTTTTTGTTAATCGCTGTAGAACTGGAAACAGTTTGAGGAACCGAAAAATGAATAACAAGAATTTTCCAGGTCGGAAAATGTTGTTTTTTCTTTTCGTTCTCTAGGTTTTTGAAAAGTAGGTAAAAATATGTTTTTTAGTCTTGAAAATA</canonical>
            <polymorphic>AACCATTTTCAGGAGTCTGAAGCTCGGCTGTCAAGTTTTCGATCAATTCGAAAACTTTGGAGAGTGTGATACAGACCTAGATTGAAAACTTTGCTTTTACAGAATTTTTTGGAAATTCCTAGTTTTTCAGATATTTGCGAATTTCTGAAAGTCACCCTTTTCCCCTTTTTTTTGTACTGAAAAATGAAAAAAACAAGCGTTCTTTGGAAATCGGCAAATAGCTGAAAAATTAGGGATTTTCAAAAAGTGATCGGACACTTGACAACCGAGCTACAGATTCCTGAAAATGGTCAAAATGGCTCAAAATTCATTGAAAAATACGTTGTTGTATATCTTATTGACTCTTGAGTTCAAAAAACTAAAGATTCTGACTGCAAATTTGAAAAAAAAGTTTCTTGGAAAAATAGTAGTGCCCATTTGAATCAGCTTATTTTATAAAACCAGAATTAAGCCCTGGCTCGGCAAATGAAATCTGTAAAATTGAAACTTGAGCGATCAAWAGAAAAAAAAACAGATGAAAGTCTTATGAATTCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAGTAGTCTTTGTTTTTGTTAATCGCTGTAGAACTGGAAACAGTTTGAGGAACCGAAAAATGAATAACAAGAATTTTCCAGGTCGGAAAATGTTGTTTTTTCTTTTCGTTCTCTAGGTTTTTGAAAAGTAGGTAAAAATATGTTTTTTAGTCTTGAAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAGTAGTGCCCATTTGAATC</pcr_primer_p1>
		<pcr_primer_p2>GGAAAAGTGGTTTAGGTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATAGTAGTGCCCATTTGAATCAGCTTATTTTATAAAACCAGAATTAAGCCCTGGCTCGGCAAATGAAATCTGTAAAATTGAAACTTGAGCGATCAAAAGAAAAAAAAACAGATGAAAGTCTTATGAATTCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCC</canonical_amplicon>
		<polymorphic_amplicon>AATAGTAGTGCCCATTTGAATCAGCTTATTTTATAAAACCAGAATTAAGCCCTGGCTCGGCAAATGAAATCTGTAAAATTGAAACTTGAGCGATCAAWAGAAAAAAAAACAGATGAAAGTCTTATGAATTCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8349</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>72294</contig_pos>
        <strand>+</strand>
        <context>CCTGGCTCGG[C/T]AAATGAAATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCATTTGAATCAGCTTATTTTATAAAACCAGAATTAAGCCCTGGCTCGG</left_flank>
        <right_flank>AAATGAAATCTGTAAAATTGAAACTTGAGCGATCAAAAGAAAAAAAAACA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAAGATATACAATAACGTCAATTTCAGTGGATTTCAACCATTTTCAGGAGTCTGAAGCTCGGCTGTCAAGTTTTCGATCAATTCGAAAACTTTGGAGAGTGTGATACAGACCTAGATTGAAAACTTTGCTTTTACAGAATTTTTTGGAAATTCCTAGTTTTTCAGATATTTGCGAATTTCTGAAAGTCACCCTTTTCCCCTTTTTTTTGTACTGAAAAATGAAAAAAACAAGCGTTCTTTGGAAATCGGCAAATAGCTGAAAAATTAGGGATTTTCAAAAAGTGATCGGACACTTGACAACCGAGCTACAGATTCCTGAAAATGGTCAAAATGGCTCAAAATTCATTGAAAAATACGTTGTTGTATATCTTATTGACTCTTGAGTTCAAAAAACTAAAGATTCTGACTGCAAATTTGAAAAAAAAGTTTCTTGGAAAAATAGTAGTGCCCATTTGAATCAGCTTATTTTATAAAACCAGAATTAAGCCCTGGCTCGGCAAATGAAATCTGTAAAATTGAAACTTGAGCGATCAAAAGAAAAAAAAACAGATGAAAGTCTTATGAATTCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAGTAGTCTTTGTTTTTGTTAATCGCTGTAGAACTGGAAACAGTTTGAGGAACCGAAAAATGAATAACAAGAATTTTCCAGGTCGGAAAATGTTGTTTTTTCTTTTCGTTCTCTAGGTTTTTGA</canonical>
            <polymorphic>AATAAGATATACAATAACGTCAATTTCAGTGGATTTCAACCATTTTCAGGAGTCTGAAGCTCGGCTGTCAAGTTTTCGATCAATTCGAAAACTTTGGAGAGTGTGATACAGACCTAGATTGAAAACTTTGCTTTTACAGAATTTTTTGGAAATTCCTAGTTTTTCAGATATTTGCGAATTTCTGAAAGTCACCCTTTTCCCCTTTTTTTTGTACTGAAAAATGAAAAAAACAAGCGTTCTTTGGAAATCGGCAAATAGCTGAAAAATTAGGGATTTTCAAAAAGTGATCGGACACTTGACAACCGAGCTACAGATTCCTGAAAATGGTCAAAATGGCTCAAAATTCATTGAAAAATACGTTGTTGTATATCTTATTGACTCTTGAGTTCAAAAAACTAAAGATTCTGACTGCAAATTTGAAAAAAAAGTTTCTTGGAAAAATAGTAGTGCCCATTTGAATCAGCTTATTTTATAAAACCAGAATTAAGCCCTGGCTCGGYAAATGAAATCTGTAAAATTGAAACTTGAGCGATCAAAAGAAAAAAAAACAGATGAAAGTCTTATGAATTCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAGTAGTCTTTGTTTTTGTTAATCGCTGTAGAACTGGAAACAGTTTGAGGAACCGAAAAATGAATAACAAGAATTTTCCAGGTCGGAAAATGTTGTTTTTTCTTTTCGTTCTCTAGGTTTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAGTAGTGCCCATTTGAATC</pcr_primer_p1>
		<pcr_primer_p2>GGAAAAGTGGTTTAGGTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATAGTAGTGCCCATTTGAATCAGCTTATTTTATAAAACCAGAATTAAGCCCTGGCTCGGCAAATGAAATCTGTAAAATTGAAACTTGAGCGATCAAAAGAAAAAAAAACAGATGAAAGTCTTATGAATTCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCC</canonical_amplicon>
		<polymorphic_amplicon>AATAGTAGTGCCCATTTGAATCAGCTTATTTTATAAAACCAGAATTAAGCCCTGGCTCGGYAAATGAAATCTGTAAAATTGAAACTTGAGCGATCAAAAGAAAAAAAAACAGATGAAAGTCTTATGAATTCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8350</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>72195</contig_pos>
        <strand>+</strand>
        <context>AAAAACTAAA[A/G]ATTCTGACTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAATACGTTGTTGTATATCTTATTGACTCTTGAGTTCAAAAAACTAAA</left_flank>
        <right_flank>ATTCTGACTGCAAATTTGAAAAAAAAGTTTCTTGGAAAAATAGTAGTGCC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATATCCCAGGATGATTTTTTTTGGTCATTTTTTTATTGAAAATAATATTATACGTTTCTAGCAAGTATTCATATACAGTATCAGTACAGTATCAGTCAATAAGATATACAATAACGTCAATTTCAGTGGATTTCAACCATTTTCAGGAGTCTGAAGCTCGGCTGTCAAGTTTTCGATCAATTCGAAAACTTTGGAGAGTGTGATACAGACCTAGATTGAAAACTTTGCTTTTACAGAATTTTTTGGAAATTCCTAGTTTTTCAGATATTTGCGAATTTCTGAAAGTCACCCTTTTCCCCTTTTTTTTGTACTGAAAAATGAAAAAAACAAGCGTTCTTTGGAAATCGGCAAATAGCTGAAAAATTAGGGATTTTCAAAAAGTGATCGGACACTTGACAACCGAGCTACAGATTCCTGAAAATGGTCAAAATGGCTCAAAATTCATTGAAAAATACGTTGTTGTATATCTTATTGACTCTTGAGTTCAAAAAACTAAAGATTCTGACTGCAAATTTGAAAAAAAAGTTTCTTGGAAAAATAGTAGTGCCCATTTGAATCAGCTTATTTTATAAAACCAGAATTAAGCCCTGGCTCGGCAAATGAAATCTGTAAAATTGAAACTTGAGCGATCAAAAGAAAAAAAAACAGATGAAAGTCTTATGAATTCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAGTAGTCTTTGTTTTTGTTAATCG</canonical>
            <polymorphic>GAATATCCCAGGATGATTTTTTTTGGTCATTTTTTTATTGAAAATAATATTATACGTTTCTAGCAAGTATTCATATACAGTATCAGTACAGTATCAGTCAATAAGATATACAATAACGTCAATTTCAGTGGATTTCAACCATTTTCAGGAGTCTGAAGCTCGGCTGTCAAGTTTTCGATCAATTCGAAAACTTTGGAGAGTGTGATACAGACCTAGATTGAAAACTTTGCTTTTACAGAATTTTTTGGAAATTCCTAGTTTTTCAGATATTTGCGAATTTCTGAAAGTCACCCTTTTCCCCTTTTTTTTGTACTGAAAAATGAAAAAAACAAGCGTTCTTTGGAAATCGGCAAATAGCTGAAAAATTAGGGATTTTCAAAAAGTGATCGGACACTTGACAACCGAGCTACAGATTCCTGAAAATGGTCAAAATGGCTCAAAATTCATTGAAAAATACGTTGTTGTATATCTTATTGACTCTTGAGTTCAAAAAACTAAARATTCTGACTGCAAATTTGAAAAAAAAGTTTCTTGGAAAAATAGTAGTGCCCATTTGAATCAGCTTATTTTATAAAACCAGAATTAAGCCCTGGCTCGGCAAATGAAATCTGTAAAATTGAAACTTGAGCGATCAAAAGAAAAAAAAACAGATGAAAGTCTTATGAATTCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAGTAGTCTTTGTTTTTGTTAATCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>263 158 149 124 118 64 56 44 24</canonical_bands>
                <polymorphic_bands>263 158 149 124 118 80 64 44</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>412 158 124 118 88 56 44</canonical_bands>
                <polymorphic_bands>412 158 144 124 118 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTTTCTAGCAAGTATTCATATACA</pcr_primer_p1>
		<pcr_primer_p2>CAAATGGGCACTACTATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>502</pcr_amplicon_size>
		<canonical_amplicon>CGTTTCTAGCAAGTATTCATATACAGTATCAGTACAGTATCAGTCAATAAGATATACAATAACGTCAATTTCAGTGGATTTCAACCATTTTCAGGAGTCTGAAGCTCGGCTGTCAAGTTTTCGATCAATTCGAAAACTTTGGAGAGTGTGATACAGACCTAGATTGAAAACTTTGCTTTTACAGAATTTTTTGGAAATTCCTAGTTTTTCAGATATTTGCGAATTTCTGAAAGTCACCCTTTTCCCCTTTTTTTTGTACTGAAAAATGAAAAAAACAAGCGTTCTTTGGAAATCGGCAAATAGCTGAAAAATTAGGGATTTTCAAAAAGTGATCGGACACTTGACAACCGAGCTACAGATTCCTGAAAATGGTCAAAATGGCTCAAAATTCATTGAAAAATACGTTGTTGTATATCTTATTGACTCTTGAGTTCAAAAAACTAAAGATTCTGACTGCAAATTTGAAAAAAAAGTTTCTTGGAAAAATAGTAGTGCCCATTTG</canonical_amplicon>
		<polymorphic_amplicon>CGTTTCTAGCAAGTATTCATATACAGTATCAGTACAGTATCAGTCAATAAGATATACAATAACGTCAATTTCAGTGGATTTCAACCATTTTCAGGAGTCTGAAGCTCGGCTGTCAAGTTTTCGATCAATTCGAAAACTTTGGAGAGTGTGATACAGACCTAGATTGAAAACTTTGCTTTTACAGAATTTTTTGGAAATTCCTAGTTTTTCAGATATTTGCGAATTTCTGAAAGTCACCCTTTTCCCCTTTTTTTTGTACTGAAAAATGAAAAAAACAAGCGTTCTTTGGAAATCGGCAAATAGCTGAAAAATTAGGGATTTTCAAAAAGTGATCGGACACTTGACAACCGAGCTACAGATTCCTGAAAATGGTCAAAATGGCTCAAAATTCATTGAAAAATACGTTGTTGTATATCTTATTGACTCTTGAGTTCAAAAAACTAAARATTCTGACTGCAAATTTGAAAAAAAAGTTTCTTGGAAAAATAGTAGTGCCCATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8351</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>72912</contig_pos>
        <strand>+</strand>
        <context>TCAACTGGGG[C/G]GAGAAGAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACAACAAGAAACAAAATGTTCCAACACATTGTGAACTGTGTCAACTGGGG</left_flank>
        <right_flank>GAGAAGAAATCACCGTCAACCCACTCATTCGAAAATCAACAATAGACTGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAGTAGTCTTTGTTTTTGTTAATCGCTGTAGAACTGGAAACAGTTTGAGGAACCGAAAAATGAATAACAAGAATTTTCCAGGTCGGAAAATGTTGTTTTTTCTTTTCGTTCTCTAGGTTTTTGAAAAGTAGGTAAAAATATGTTTTTTAGTCTTGAAAATATTTCAATTTTGAAAATAAAAAACTGATTATACAACAAGAAACAAAATGTTCCAACACATTGTGAACTGTGTCAACTGGGGGGAGAAGAAATCACCGTCAACCCACTCATTCGAAAATCAACAATAGACTGAGAGAGAAAGAAAAGAGCAAACAGCTAACAAAACACTCACAGATCACTGCTCGCATATTTAGCGCTCTCTTGAATCAGACTACATTCATGTTTGGCTCCTCGTCTCTGCTTTTTTTTCAGACACATAACATTGGGGGAAACCTTTAAGAGAGCGAACAAAATTTGTGTCCGACTGACTTGTTGGCTGCAAAAATGAATTAATAATTCACAACAGCACGTTGTGGAGACAAGCGACCAAAGTTTGACATATTTTGAGACATGATGTTCAATGCAAAATTTTAAATGAATTTTAGACTAAAATTAGCCGTTGTTTGCCTGAAACAAGAGCCGAGTAAACGAGGCTTATTCTAGAAACAAGCGAGTTTGAACAAAGTAAAATGGTACTGAAACGAAATGGTAGGAATGGTACTGTATTCTTTAATTCTTCTTCAATTCTTCATTCTTCTTTTTC</canonical>
            <polymorphic>TTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAGTAGTCTTTGTTTTTGTTAATCGCTGTAGAACTGGAAACAGTTTGAGGAACCGAAAAATGAATAACAAGAATTTTCCAGGTCGGAAAATGTTGTTTTTTCTTTTCGTTCTCTAGGTTTTTGAAAAGTAGGTAAAAATATGTTTTTTAGTCTTGAAAATATTTCAATTTTGAAAATAAAAAACTGATTATACAACAAGAAACAAAATGTTCCAACACATTGTGAACTGTGTCAACTGGGGSGAGAAGAAATCACCGTCAACCCACTCATTCGAAAATCAACAATAGACTGAGAGAGAAAGAAAAGAGCAAACAGCTAACAAAACACTCACAGATCACTGCTCGCATATTTAGCGCTCTCTTGAATCAGACTACATTCATGTTTGGCTCCTCGTCTCTGCTTTTTTTTCAGACACATAACATTGGGGGAAACCTTTAAGAGAGCGAACAAAATTTGTGTCCGACTGACTTGTTGGCTGCAAAAATGAATTAATAATTCACAACAGCACGTTGTGGAGACAAGCGACCAAAGTTTGACATATTTTGAGACATGATGTTCAATGCAAAATTTTAAATGAATTTTAGACTAAAATTAGCCGTTGTTTGCCTGAAACAAGAGCCGAGTAAACGAGGCTTATTCTAGAAACAAGCGAGTTTGAACAAAGTAAAATGGTACTGAAACGAAATGGTAGGAATGGTACTGTATTCTTTAATTCTTCTTCAATTCTTCATTCTTCTTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTTTTCGTTCTCTAGGTT</pcr_primer_p1>
		<pcr_primer_p2>CAGTGATCTGTGAGTGTTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTTTTCGTTCTCTAGGTTTTTGAAAAGTAGGTAAAAATATGTTTTTTAGTCTTGAAAATATTTCAATTTTGAAAATAAAAAACTGATTATACAACAAGAAACAAAATGTTCCAACACATTGTGAACTGTGTCAACTGGGGGGAGAAGAAATCACCGTCAACCCACTCATTCGAAAATCAACAATAGACTGAGAGAGAAAGAAAAGAGCAAACAGCTAACAAAACACTCACAGATCACTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTTTTCGTTCTCTAGGTTTTTGAAAAGTAGGTAAAAATATGTTTTTTAGTCTTGAAAATATTTCAATTTTGAAAATAAAAAACTGATTATACAACAAGAAACAAAATGTTCCAACACATTGTGAACTGTGTCAACTGGGGSGAGAAGAAATCACCGTCAACCCACTCATTCGAAAATCAACAATAGACTGAGAGAGAAAGAAAAGAGCAAACAGCTAACAAAACACTCACAGATCACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8352</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>72867</contig_pos>
        <strand>+</strand>
        <context>ATTATACAAC[A/C]AGAAACAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTAGTCTTGAAAATATTTCAATTTTGAAAATAAAAAACTGATTATACAAC</left_flank>
        <right_flank>AGAAACAAAATGTTCCAACACATTGTGAACTGTGTCAACTGGGGGGAGAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAGTAGTCTTTGTTTTTGTTAATCGCTGTAGAACTGGAAACAGTTTGAGGAACCGAAAAATGAATAACAAGAATTTTCCAGGTCGGAAAATGTTGTTTTTTCTTTTCGTTCTCTAGGTTTTTGAAAAGTAGGTAAAAATATGTTTTTTAGTCTTGAAAATATTTCAATTTTGAAAATAAAAAACTGATTATACAACAAGAAACAAAATGTTCCAACACATTGTGAACTGTGTCAACTGGGGGGAGAAGAAATCACCGTCAACCCACTCATTCGAAAATCAACAATAGACTGAGAGAGAAAGAAAAGAGCAAACAGCTAACAAAACACTCACAGATCACTGCTCGCATATTTAGCGCTCTCTTGAATCAGACTACATTCATGTTTGGCTCCTCGTCTCTGCTTTTTTTTCAGACACATAACATTGGGGGAAACCTTTAAGAGAGCGAACAAAATTTGTGTCCGACTGACTTGTTGGCTGCAAAAATGAATTAATAATTCACAACAGCACGTTGTGGAGACAAGCGACCAAAGTTTGACATATTTTGAGACATGATGTTCAATGCAAAATTTTAAATGAATTTTAGACTAAAATTAGCCGTTGTTTGCCTGAAACAAGAGCCGAGTAAACGAGGCTTATTCTAGAAACAAGCGAGTTTGAACAAAGTAAAATGGTACTGAAACGAAATGGTAGGAATGG</canonical>
            <polymorphic>AGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAGTAGTCTTTGTTTTTGTTAATCGCTGTAGAACTGGAAACAGTTTGAGGAACCGAAAAATGAATAACAAGAATTTTCCAGGTCGGAAAATGTTGTTTTTTCTTTTCGTTCTCTAGGTTTTTGAAAAGTAGGTAAAAATATGTTTTTTAGTCTTGAAAATATTTCAATTTTGAAAATAAAAAACTGATTATACAACMAGAAACAAAATGTTCCAACACATTGTGAACTGTGTCAACTGGGGGGAGAAGAAATCACCGTCAACCCACTCATTCGAAAATCAACAATAGACTGAGAGAGAAAGAAAAGAGCAAACAGCTAACAAAACACTCACAGATCACTGCTCGCATATTTAGCGCTCTCTTGAATCAGACTACATTCATGTTTGGCTCCTCGTCTCTGCTTTTTTTTCAGACACATAACATTGGGGGAAACCTTTAAGAGAGCGAACAAAATTTGTGTCCGACTGACTTGTTGGCTGCAAAAATGAATTAATAATTCACAACAGCACGTTGTGGAGACAAGCGACCAAAGTTTGACATATTTTGAGACATGATGTTCAATGCAAAATTTTAAATGAATTTTAGACTAAAATTAGCCGTTGTTTGCCTGAAACAAGAGCCGAGTAAACGAGGCTTATTCTAGAAACAAGCGAGTTTGAACAAAGTAAAATGGTACTGAAACGAAATGGTAGGAATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTTTTCGTTCTCTAGGTT</pcr_primer_p1>
		<pcr_primer_p2>CAGTGATCTGTGAGTGTTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTTTTCGTTCTCTAGGTTTTTGAAAAGTAGGTAAAAATATGTTTTTTAGTCTTGAAAATATTTCAATTTTGAAAATAAAAAACTGATTATACAACAAGAAACAAAATGTTCCAACACATTGTGAACTGTGTCAACTGGGGGGAGAAGAAATCACCGTCAACCCACTCATTCGAAAATCAACAATAGACTGAGAGAGAAAGAAAAGAGCAAACAGCTAACAAAACACTCACAGATCACTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTTTTCGTTCTCTAGGTTTTTGAAAAGTAGGTAAAAATATGTTTTTTAGTCTTGAAAATATTTCAATTTTGAAAATAAAAAACTGATTATACAACMAGAAACAAAATGTTCCAACACATTGTGAACTGTGTCAACTGGGGGGAGAAGAAATCACCGTCAACCCACTCATTCGAAAATCAACAATAGACTGAGAGAGAAAGAAAAGAGCAAACAGCTAACAAAACACTCACAGATCACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8353</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>72691</contig_pos>
        <strand>+</strand>
        <context>TGTTTTTGTT[A/T]ATCGCTGTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGAATGGAAGAATCGGGAAATACTTGCTACAGTAGTCTTTGTTTTTGTT</left_flank>
        <right_flank>ATCGCTGTAGAACTGGAAACAGTTTGAGGAACCGAAAAATGAATAACAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGATTCTGACTGCAAATTTGAAAAAAAAGTTTCTTGGAAAAATAGTAGTGCCCATTTGAATCAGCTTATTTTATAAAACCAGAATTAAGCCCTGGCTCGGCAAATGAAATCTGTAAAATTGAAACTTGAGCGATCAAAAGAAAAAAAAACAGATGAAAGTCTTATGAATTCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAGTAGTCTTTGTTTTTGTTAATCGCTGTAGAACTGGAAACAGTTTGAGGAACCGAAAAATGAATAACAAGAATTTTCCAGGTCGGAAAATGTTGTTTTTTCTTTTCGTTCTCTAGGTTTTTGAAAAGTAGGTAAAAATATGTTTTTTAGTCTTGAAAATATTTCAATTTTGAAAATAAAAAACTGATTATACAACAAGAAACAAAATGTTCCAACACATTGTGAACTGTGTCAACTGGGGGGAGAAGAAATCACCGTCAACCCACTCATTCGAAAATCAACAATAGACTGAGAGAGAAAGAAAAGAGCAAACAGCTAACAAAACACTCACAGATCACTGCTCGCATATTTAGCGCTCTCTTGAATCAGACTACATTCATGTTTGGCTCCTCGTCTCTGCTTTTTTTTCAGACACATAACATTGGGGGAAACCTTTAAGAGAGCGAACAAAATTTGTGTCCGACTGACTTGTTGGCTGCAAAAATGAATTAATAATTCACAACAGCACGTTGTGGAGACAA</canonical>
            <polymorphic>AAAGATTCTGACTGCAAATTTGAAAAAAAAGTTTCTTGGAAAAATAGTAGTGCCCATTTGAATCAGCTTATTTTATAAAACCAGAATTAAGCCCTGGCTCGGCAAATGAAATCTGTAAAATTGAAACTTGAGCGATCAAAAGAAAAAAAAACAGATGAAAGTCTTATGAATTCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAGTAGTCTTTGTTTTTGTTWATCGCTGTAGAACTGGAAACAGTTTGAGGAACCGAAAAATGAATAACAAGAATTTTCCAGGTCGGAAAATGTTGTTTTTTCTTTTCGTTCTCTAGGTTTTTGAAAAGTAGGTAAAAATATGTTTTTTAGTCTTGAAAATATTTCAATTTTGAAAATAAAAAACTGATTATACAACAAGAAACAAAATGTTCCAACACATTGTGAACTGTGTCAACTGGGGGGAGAAGAAATCACCGTCAACCCACTCATTCGAAAATCAACAATAGACTGAGAGAGAAAGAAAAGAGCAAACAGCTAACAAAACACTCACAGATCACTGCTCGCATATTTAGCGCTCTCTTGAATCAGACTACATTCATGTTTGGCTCCTCGTCTCTGCTTTTTTTTCAGACACATAACATTGGGGGAAACCTTTAAGAGAGCGAACAAAATTTGTGTCCGACTGACTTGTTGGCTGCAAAAATGAATTAATAATTCACAACAGCACGTTGTGGAGACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>416 311 100 87 54 32</canonical_bands>
                <polymorphic_bands>727 100 87 54 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACTTTTTGCAAACGATTAGTCT</pcr_primer_p1>
		<pcr_primer_p2>ACCTACTTTTCAAAAACCTAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAGTAGTCTTTGTTTTTGTTAATCGCTGTAGAACTGGAAACAGTTTGAGGAACCGAAAAATGAATAACAAGAATTTTCCAGGTCGGAAAATGTTGTTTTTTCTTTTCGTTCTCTAGGTTTTTGAAAAGTAGGT</canonical_amplicon>
		<polymorphic_amplicon>TACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAGTAGTCTTTGTTTTTGTTWATCGCTGTAGAACTGGAAACAGTTTGAGGAACCGAAAAATGAATAACAAGAATTTTCCAGGTCGGAAAATGTTGTTTTTTCTTTTCGTTCTCTAGGTTTTTGAAAAGTAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8354</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>72662</contig_pos>
        <strand>+</strand>
        <context>AATCGGGAAA[C/T]ACTTGCTACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAA</left_flank>
        <right_flank>ACTTGCTACAGTAGTCTTTGTTTTTGTTAATCGCTGTAGAACTGGAAACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTTATTGACTCTTGAGTTCAAAAAACTAAAGATTCTGACTGCAAATTTGAAAAAAAAGTTTCTTGGAAAAATAGTAGTGCCCATTTGAATCAGCTTATTTTATAAAACCAGAATTAAGCCCTGGCTCGGCAAATGAAATCTGTAAAATTGAAACTTGAGCGATCAAAAGAAAAAAAAACAGATGAAAGTCTTATGAATTCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAGTAGTCTTTGTTTTTGTTAATCGCTGTAGAACTGGAAACAGTTTGAGGAACCGAAAAATGAATAACAAGAATTTTCCAGGTCGGAAAATGTTGTTTTTTCTTTTCGTTCTCTAGGTTTTTGAAAAGTAGGTAAAAATATGTTTTTTAGTCTTGAAAATATTTCAATTTTGAAAATAAAAAACTGATTATACAACAAGAAACAAAATGTTCCAACACATTGTGAACTGTGTCAACTGGGGGGAGAAGAAATCACCGTCAACCCACTCATTCGAAAATCAACAATAGACTGAGAGAGAAAGAAAAGAGCAAACAGCTAACAAAACACTCACAGATCACTGCTCGCATATTTAGCGCTCTCTTGAATCAGACTACATTCATGTTTGGCTCCTCGTCTCTGCTTTTTTTTCAGACACATAACATTGGGGGAAACCTTTAAGAGAGCGAACAAAATTTGTGTCCGACTGACTTGTTGGCTGCAAAAATGAATTAA</canonical>
            <polymorphic>ATCTTATTGACTCTTGAGTTCAAAAAACTAAAGATTCTGACTGCAAATTTGAAAAAAAAGTTTCTTGGAAAAATAGTAGTGCCCATTTGAATCAGCTTATTTTATAAAACCAGAATTAAGCCCTGGCTCGGCAAATGAAATCTGTAAAATTGAAACTTGAGCGATCAAAAGAAAAAAAAACAGATGAAAGTCTTATGAATTCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAAYACTTGCTACAGTAGTCTTTGTTTTTGTTAATCGCTGTAGAACTGGAAACAGTTTGAGGAACCGAAAAATGAATAACAAGAATTTTCCAGGTCGGAAAATGTTGTTTTTTCTTTTCGTTCTCTAGGTTTTTGAAAAGTAGGTAAAAATATGTTTTTTAGTCTTGAAAATATTTCAATTTTGAAAATAAAAAACTGATTATACAACAAGAAACAAAATGTTCCAACACATTGTGAACTGTGTCAACTGGGGGGAGAAGAAATCACCGTCAACCCACTCATTCGAAAATCAACAATAGACTGAGAGAGAAAGAAAAGAGCAAACAGCTAACAAAACACTCACAGATCACTGCTCGCATATTTAGCGCTCTCTTGAATCAGACTACATTCATGTTTGGCTCCTCGTCTCTGCTTTTTTTTCAGACACATAACATTGGGGGAAACCTTTAAGAGAGCGAACAAAATTTGTGTCCGACTGACTTGTTGGCTGCAAAAATGAATTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAAACCACTTTTCCCTAAAATC</pcr_primer_p1>
		<pcr_primer_p2>CTCAAACTGTTTCCAGTTCTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAGTAGTCTTTGTTTTTGTTAATCGCTGTAGAACTGGAAACAGTTTGAG</canonical_amplicon>
		<polymorphic_amplicon>CTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAAYACTTGCTACAGTAGTCTTTGTTTTTGTTAATCGCTGTAGAACTGGAAACAGTTTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8355</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>72626</contig_pos>
        <strand>+</strand>
        <context>TTTCAAAAAT[A/G]GCTGATTTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAAT</left_flank>
        <right_flank>GCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAGTAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGCTCAAAATTCATTGAAAAATACGTTGTTGTATATCTTATTGACTCTTGAGTTCAAAAAACTAAAGATTCTGACTGCAAATTTGAAAAAAAAGTTTCTTGGAAAAATAGTAGTGCCCATTTGAATCAGCTTATTTTATAAAACCAGAATTAAGCCCTGGCTCGGCAAATGAAATCTGTAAAATTGAAACTTGAGCGATCAAAAGAAAAAAAAACAGATGAAAGTCTTATGAATTCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAGTAGTCTTTGTTTTTGTTAATCGCTGTAGAACTGGAAACAGTTTGAGGAACCGAAAAATGAATAACAAGAATTTTCCAGGTCGGAAAATGTTGTTTTTTCTTTTCGTTCTCTAGGTTTTTGAAAAGTAGGTAAAAATATGTTTTTTAGTCTTGAAAATATTTCAATTTTGAAAATAAAAAACTGATTATACAACAAGAAACAAAATGTTCCAACACATTGTGAACTGTGTCAACTGGGGGGAGAAGAAATCACCGTCAACCCACTCATTCGAAAATCAACAATAGACTGAGAGAGAAAGAAAAGAGCAAACAGCTAACAAAACACTCACAGATCACTGCTCGCATATTTAGCGCTCTCTTGAATCAGACTACATTCATGTTTGGCTCCTCGTCTCTGCTTTTTTTTCAGACACATAACATTGGGGGAAACCTTTAAGAGAGCGAACAAAATTTG</canonical>
            <polymorphic>ATGGCTCAAAATTCATTGAAAAATACGTTGTTGTATATCTTATTGACTCTTGAGTTCAAAAAACTAAAGATTCTGACTGCAAATTTGAAAAAAAAGTTTCTTGGAAAAATAGTAGTGCCCATTTGAATCAGCTTATTTTATAAAACCAGAATTAAGCCCTGGCTCGGCAAATGAAATCTGTAAAATTGAAACTTGAGCGATCAAAAGAAAAAAAAACAGATGAAAGTCTTATGAATTCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATRGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAGTAGTCTTTGTTTTTGTTAATCGCTGTAGAACTGGAAACAGTTTGAGGAACCGAAAAATGAATAACAAGAATTTTCCAGGTCGGAAAATGTTGTTTTTTCTTTTCGTTCTCTAGGTTTTTGAAAAGTAGGTAAAAATATGTTTTTTAGTCTTGAAAATATTTCAATTTTGAAAATAAAAAACTGATTATACAACAAGAAACAAAATGTTCCAACACATTGTGAACTGTGTCAACTGGGGGGAGAAGAAATCACCGTCAACCCACTCATTCGAAAATCAACAATAGACTGAGAGAGAAAGAAAAGAGCAAACAGCTAACAAAACACTCACAGATCACTGCTCGCATATTTAGCGCTCTCTTGAATCAGACTACATTCATGTTTGGCTCCTCGTCTCTGCTTTTTTTTCAGACACATAACATTGGGGGAAACCTTTAAGAGAGCGAACAAAATTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>370 358 141 131</canonical_bands>
                <polymorphic_bands>728 141 131</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>358 339 127 71 70 25 6 4</canonical_bands>
                <polymorphic_bands>697 127 71 70 25 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAAACCACTTTTCCCTAAAATC</pcr_primer_p1>
		<pcr_primer_p2>CTCAAACTGTTTCCAGTTCTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAGTAGTCTTTGTTTTTGTTAATCGCTGTAGAACTGGAAACAGTTTGAG</canonical_amplicon>
		<polymorphic_amplicon>CTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATRGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAGTAGTCTTTGTTTTTGTTAATCGCTGTAGAACTGGAAACAGTTTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8360</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>207398</contig_pos>
        <strand>+</strand>
        <context>ACGTAGCCAG[C/T]GTTATGAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCTCTGTCCAAGTAAAATGGATGGCTGGTACTGTAGAAGACGTAGCCAG</left_flank>
        <right_flank>GTTATGAAAGTAGACATCCTGTAACTTGTGAACAGGTGAAACAAATGTGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTACGGCACAATAAATGATTATAGTATATTGGACCAACATTATTGAAGTTAAACTCAAAGATAATAGAAAATTCCGCCATCTTATTGAGCCATCAGCGTTATACGTAACGAGGATAATTGCAGAAATATCCGATATATTCAAGTTGTATTTTTGTTTCATTCCCAATCTCATATAATTTTCAGAATAATCATCTCTTTTTCCTAGAGAGTGTACCGATAGACACCAAAGGATTCCAAAAAACAGCGCATAAACCATCCAGATGAAAAACTTCCATCCTTTGAACAATTTTAGTTTTGTCGTGCTACAATTTCAGAGAGTTTGAACTAGAAGACTCTGAACGAAATCTTACTGAAAAACGGCCCAATATCTATACAAGAACTGAACGGATAATAGAGAAGTTGTGCAGGCGTAAACTCCGGTATAGAAGGAAATTAAGCATGTTACGGAGTCTCTGTCCAAGTAAAATGGATGGCTGGTACTGTAGAAGACGTAGCCAGTGTTATGAAAGTAGACATCCTGTAACTTGTGAACAGGTGAAACAAATGTGAACTTTTTTGGAATTACCGGGTAGATAAGAAACTCAATAGACGCGAAAACAATTCCACACGCTGGGAACACTATCAACAGATATTTGTAGCTCCCGAACTTTCGTTTCAAGAAGAATGTGGTTAGAATTATAATGAGAAAACAGAAAAATGAAGTTGAGACGAATCCGAGTTGCGCAACATTCCGCGCATATTGAGCGTAACGGGTATACGGACCGGGGACCATTTTTGGTGGGAGAATTATTTGTGCTTTGGGTTGATGAAAGGAAAATAGTAGTAGCGTCGAAGGAACGTGACTGTTGTTTCCAAGACCGAAGTCTAGAGTGTCGTGTTCTCAGGAGAGTTGGAATCAGAAAAAAGTAGATGATCGAAAATGAAAAACACCATGGAGTAGATGTTGCTTCGGGGCTTAATTAAAGTTAAGACAATCTCTGGATGGAATTAACTCTCGAA</canonical>
            <polymorphic>TGTACGGCACAATAAATGATTATAGTATATTGGACCAACATTATTGAAGTTAAACTCAAAGATAATAGAAAATTCCGCCATCTTATTGAGCCATCAGCGTTATACGTAACGAGGATAATTGCAGAAATATCCGATATATTCAAGTTGTATTTTTGTTTCATTCCCAATCTCATATAATTTTCAGAATAATCATCTCTTTTTCCTAGAGAGTGTACCGATAGACACCAAAGGATTCCAAAAAACAGCGCATAAACCATCCAGATGAAAAACTTCCATCCTTTGAACAATTTTAGTTTTGTCGTGCTACAATTTCAGAGAGTTTGAACTAGAAGACTCTGAACGAAATCTTACTGAAAAACGGCCCAATATCTATACAAGAACTGAACGGATAATAGAGAAGTTGTGCAGGCGTAAACTCCGGTATAGAAGGAAATTAAGCATGTTACGGAGTCTCTGTCCAAGTAAAATGGATGGCTGGTACTGTAGAAGACGTAGCCAGYGTTATGAAAGTAGACATCCTGTAACTTGTGAACAGGTGAAACAAATGTGAACTTTTTTGGAATTACCGGGTAGATAAGAAACTCAATAGACGCGAAAACAATTCCACACGCTGGGAACACTATCAACAGATATTTGTAGCTCCCGAACTTTCGTTTCAAGAAGAATGTGGTTAGAATTATAATGAGAAAACAGAAAAATGAAGTTGAGACGAATCCGAGTTGCGCAACATTCCGCGCATATTGAGCGTAACGGGTATACGGACCGGGGACCATTTTTGGTGGGAGAATTATTTGTGCTTTGGGTTGATGAAAGGAAAATAGTAGTAGCGTCGAAGGAACGTGACTGTTGTTTCCAAGACCGAAGTCTAGAGTGTCGTGTTCTCAGGAGAGTTGGAATCAGAAAAAAGTAGATGATCGAAAATGAAAAACACCATGGAGTAGATGTTGCTTCGGGGCTTAATTAAAGTTAAGACAATCTCTGGATGGAATTAACTCTCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>203 112 102 96 79 70 57 52 50 46 31 29 15 12 11 11 9 8 5 2</canonical_bands>
                <polymorphic_bands>203 125 112 102 79 70 57 52 50 46 31 15 12 11 11 9 8 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCTGAACGAAATCTTACTGAA</pcr_primer_p1>
		<pcr_primer_p2>GTTTCTTATCTACCCGGTAATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTCTGAACGAAATCTTACTGAAAAACGGCCCAATATCTATACAAGAACTGAACGGATAATAGAGAAGTTGTGCAGGCGTAAACTCCGGTATAGAAGGAAATTAAGCATGTTACGGAGTCTCTGTCCAAGTAAAATGGATGGCTGGTACTGTAGAAGACGTAGCCAGTGTTATGAAAGTAGACATCCTGTAACTTGTGAACAGGTGAAACAAATGTGAACTTTTTTGGAATTACCGGGTAGATAAGAAAC</canonical_amplicon>
		<polymorphic_amplicon>ACTCTGAACGAAATCTTACTGAAAAACGGCCCAATATCTATACAAGAACTGAACGGATAATAGAGAAGTTGTGCAGGCGTAAACTCCGGTATAGAAGGAAATTAAGCATGTTACGGAGTCTCTGTCCAAGTAAAATGGATGGCTGGTACTGTAGAAGACGTAGCCAGYGTTATGAAAGTAGACATCCTGTAACTTGTGAACAGGTGAAACAAATGTGAACTTTTTTGGAATTACCGGGTAGATAAGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8361</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>211610</contig_pos>
        <strand>+</strand>
        <context>AAAAGTAGTT[A/G]AACATTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGACATTGCGGAATACCTGAAGCACGTCCTGGATTACTATAAAAGTAGTT</left_flank>
        <right_flank>AACATTTTTTTTAAAACTTCTTCATACTTTTTCACAGGTGCAAGCCCGGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGACCAACTATAGATTGCGTTTGGATTTCATTGGAGGAGATTGTGGGGAGGAAGTGATGATTGTTCATCGATCATCATGGCGAATTCAGATTTTGGTAATTTTCACTTTTGTGATTTCCAGAATGTTATGATCCGTTTTTTTTTTGCTTAACCTTCGGGTCCCTGATCCTAAACGTCCCAAAGCGACCATCTGTTGCCCAGCTCTTGTCCTATTCCCGTCATTCTCCTAATTGGTATCCGCCTTTACCTAACTAAACACACTTGCTTCTAGAAAATCGAATAACTTAGGATTCATGTTTATACCTTGATGTCATGTAATTGCTGTTTTCTGAGTATAAAACTTATTTCTTGATTTTCAATTTCAAACGTTTTCACTTATTCAACTCCAGTTCATAAATGCGCTTAATACTTTTGCTTCTCTCAATTTCTCAATTTCACTACAGTACCCAAGACATTGCGGAATACCTGAAGCACGTCCTGGATTACTATAAAAGTAGTTAAACATTTTTTTTAAAACTTCTTCATACTTTTTCACAGGTGCAAGCCCGGAATGCGTTTTCAATTATACAGAGGTTAACTCAAAAACGATAAAATATTTTCCACAATGTGCTAAGGTTTATGGAATTATTGTCATAAATGAAAACACGGGTTTGAAGAAATCACAACTGGAAAAAGCGTTTCAAAACATGACATCCCTCTATGGTGGATTACGAATCGAGAATTCGAAAATGACGAATCTCTCATTCTTCCCCGCAGCTCAAAATGGGTTGCTCAAGATAATCTGTAAAACATGTAAGTTTCAAAAATATCTGAAGTTTTGAAGCTTTAAACATTTTCTAGATGGCGTCTACATACAGAACAATCAAAATCTAAAAGATGTTTCAAGCTTGGAAAAAATGTACATGTATGAAGATGAATTTGGAGAAGAATGTGATTATCGAATCGAAAATAACACAAAACTAGACGCAGAAGACTTGTGTGATACTGGATACCCACGATT</canonical>
            <polymorphic>AGACCAACTATAGATTGCGTTTGGATTTCATTGGAGGAGATTGTGGGGAGGAAGTGATGATTGTTCATCGATCATCATGGCGAATTCAGATTTTGGTAATTTTCACTTTTGTGATTTCCAGAATGTTATGATCCGTTTTTTTTTTGCTTAACCTTCGGGTCCCTGATCCTAAACGTCCCAAAGCGACCATCTGTTGCCCAGCTCTTGTCCTATTCCCGTCATTCTCCTAATTGGTATCCGCCTTTACCTAACTAAACACACTTGCTTCTAGAAAATCGAATAACTTAGGATTCATGTTTATACCTTGATGTCATGTAATTGCTGTTTTCTGAGTATAAAACTTATTTCTTGATTTTCAATTTCAAACGTTTTCACTTATTCAACTCCAGTTCATAAATGCGCTTAATACTTTTGCTTCTCTCAATTTCTCAATTTCACTACAGTACCCAAGACATTGCGGAATACCTGAAGCACGTCCTGGATTACTATAAAAGTAGTTRAACATTTTTTTTAAAACTTCTTCATACTTTTTCACAGGTGCAAGCCCGGAATGCGTTTTCAATTATACAGAGGTTAACTCAAAAACGATAAAATATTTTCCACAATGTGCTAAGGTTTATGGAATTATTGTCATAAATGAAAACACGGGTTTGAAGAAATCACAACTGGAAAAAGCGTTTCAAAACATGACATCCCTCTATGGTGGATTACGAATCGAGAATTCGAAAATGACGAATCTCTCATTCTTCCCCGCAGCTCAAAATGGGTTGCTCAAGATAATCTGTAAAACATGTAAGTTTCAAAAATATCTGAAGTTTTGAAGCTTTAAACATTTTCTAGATGGCGTCTACATACAGAACAATCAAAATCTAAAAGATGTTTCAAGCTTGGAAAAAATGTACATGTATGAAGATGAATTTGGAGAAGAATGTGATTATCGAATCGAAAATAACACAAAACTAGACGCAGAAGACTTGTGTGATACTGGATACCCACGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>255 252 174 148 95 63 13</canonical_bands>
                <polymorphic_bands>255 252 174 148 108 63</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCATAAATGCGCTTAATACTTT</pcr_primer_p1>
		<pcr_primer_p2>CAATAATTCCATAAACCTTAGCA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTCATAAATGCGCTTAATACTTTTGCTTCTCTCAATTTCTCAATTTCACTACAGTACCCAAGACATTGCGGAATACCTGAAGCACGTCCTGGATTACTATAAAAGTAGTTAAACATTTTTTTTAAAACTTCTTCATACTTTTTCACAGGTGCAAGCCCGGAATGCGTTTTCAATTATACAGAGGTTAACTCAAAAACGATAAAATATTTTCCACAATGTGCTAAGGTTTATGGAATTATTG</canonical_amplicon>
		<polymorphic_amplicon>TTCATAAATGCGCTTAATACTTTTGCTTCTCTCAATTTCTCAATTTCACTACAGTACCCAAGACATTGCGGAATACCTGAAGCACGTCCTGGATTACTATAAAAGTAGTTRAACATTTTTTTTAAAACTTCTTCATACTTTTTCACAGGTGCAAGCCCGGAATGCGTTTTCAATTATACAGAGGTTAACTCAAAAACGATAAAATATTTTCCACAATGTGCTAAGGTTTATGGAATTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8362</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>211466</contig_pos>
        <strand>+</strand>
        <context>TTCTTGATTT[C/T]CAATTTCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGATGTCATGTAATTGCTGTTTTCTGAGTATAAAACTTATTTCTTGATTT</left_flank>
        <right_flank>CAATTTCAAACGTTTTCACTTATTCAACTCCAGTTCATAAATGCGCTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTATTGCGCGCCAGTGCTATTTTTCATTTTCAGAACGTGATCACCAATGGCAATAGAACGGCTATTTTCCAAGGTAACCATCCAGATCTATTCCAAGATGGCGGAGGTGACTGTAGATTATTTGACGGAATGGATAACGATGAGACCAACTATAGATTGCGTTTGGATTTCATTGGAGGAGATTGTGGGGAGGAAGTGATGATTGTTCATCGATCATCATGGCGAATTCAGATTTTGGTAATTTTCACTTTTGTGATTTCCAGAATGTTATGATCCGTTTTTTTTTTGCTTAACCTTCGGGTCCCTGATCCTAAACGTCCCAAAGCGACCATCTGTTGCCCAGCTCTTGTCCTATTCCCGTCATTCTCCTAATTGGTATCCGCCTTTACCTAACTAAACACACTTGCTTCTAGAAAATCGAATAACTTAGGATTCATGTTTATACCTTGATGTCATGTAATTGCTGTTTTCTGAGTATAAAACTTATTTCTTGATTTTCAATTTCAAACGTTTTCACTTATTCAACTCCAGTTCATAAATGCGCTTAATACTTTTGCTTCTCTCAATTTCTCAATTTCACTACAGTACCCAAGACATTGCGGAATACCTGAAGCACGTCCTGGATTACTATAAAAGTAGTTAAACATTTTTTTTAAAACTTCTTCATACTTTTTCACAGGTGCAAGCCCGGAATGCGTTTTCAATTATACAGAGGTTAACTCAAAAACGATAAAATATTTTCCACAATGTGCTAAGGTTTATGGAATTATTGTCATAAATGAAAACACGGGTTTGAAGAAATCACAACTGGAAAAAGCGTTTCAAAACATGACATCCCTCTATGGTGGATTACGAATCGAGAATTCGAAAATGACGAATCTCTCATTCTTCCCCGCAGCTCAAAATGGGTTGCTCAAGATAATCTGTAAAACATGTAAGTTTCAAAAATATCTGAAGTTTTGAAGCTTTAAACATTTTCTAGATGGCGTCTACATACA</canonical>
            <polymorphic>TTCTATTGCGCGCCAGTGCTATTTTTCATTTTCAGAACGTGATCACCAATGGCAATAGAACGGCTATTTTCCAAGGTAACCATCCAGATCTATTCCAAGATGGCGGAGGTGACTGTAGATTATTTGACGGAATGGATAACGATGAGACCAACTATAGATTGCGTTTGGATTTCATTGGAGGAGATTGTGGGGAGGAAGTGATGATTGTTCATCGATCATCATGGCGAATTCAGATTTTGGTAATTTTCACTTTTGTGATTTCCAGAATGTTATGATCCGTTTTTTTTTTGCTTAACCTTCGGGTCCCTGATCCTAAACGTCCCAAAGCGACCATCTGTTGCCCAGCTCTTGTCCTATTCCCGTCATTCTCCTAATTGGTATCCGCCTTTACCTAACTAAACACACTTGCTTCTAGAAAATCGAATAACTTAGGATTCATGTTTATACCTTGATGTCATGTAATTGCTGTTTTCTGAGTATAAAACTTATTTCTTGATTTYCAATTTCAAACGTTTTCACTTATTCAACTCCAGTTCATAAATGCGCTTAATACTTTTGCTTCTCTCAATTTCTCAATTTCACTACAGTACCCAAGACATTGCGGAATACCTGAAGCACGTCCTGGATTACTATAAAAGTAGTTAAACATTTTTTTTAAAACTTCTTCATACTTTTTCACAGGTGCAAGCCCGGAATGCGTTTTCAATTATACAGAGGTTAACTCAAAAACGATAAAATATTTTCCACAATGTGCTAAGGTTTATGGAATTATTGTCATAAATGAAAACACGGGTTTGAAGAAATCACAACTGGAAAAAGCGTTTCAAAACATGACATCCCTCTATGGTGGATTACGAATCGAGAATTCGAAAATGACGAATCTCTCATTCTTCCCCGCAGCTCAAAATGGGTTGCTCAAGATAATCTGTAAAACATGTAAGTTTCAAAAATATCTGAAGTTTTGAAGCTTTAAACATTTTCTAGATGGCGTCTACATACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTCATGTTTATACCTTGATG</pcr_primer_p1>
		<pcr_primer_p2>CCTGTGAAAAAGTATGAAGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGATTCATGTTTATACCTTGATGTCATGTAATTGCTGTTTTCTGAGTATAAAACTTATTTCTTGATTTTCAATTTCAAACGTTTTCACTTATTCAACTCCAGTTCATAAATGCGCTTAATACTTTTGCTTCTCTCAATTTCTCAATTTCACTACAGTACCCAAGACATTGCGGAATACCTGAAGCACGTCCTGGATTACTATAAAAGTAGTTAAACATTTTTTTTAAAACTTCTTCATACTTTTTCACAGG</canonical_amplicon>
		<polymorphic_amplicon>GGATTCATGTTTATACCTTGATGTCATGTAATTGCTGTTTTCTGAGTATAAAACTTATTTCTTGATTTYCAATTTCAAACGTTTTCACTTATTCAACTCCAGTTCATAAATGCGCTTAATACTTTTGCTTCTCTCAATTTCTCAATTTCACTACAGTACCCAAGACATTGCGGAATACCTGAAGCACGTCCTGGATTACTATAAAAGTAGTTAAACATTTTTTTTAAAACTTCTTCATACTTTTTCACAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8365</snp_id>
        <super_contig>c004501355.Contig1</super_contig>
        <contig_pos>11423</contig_pos>
        <strand>+</strand>
        <context>AATTCTCAAA[A/G]AATARTCCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTGCAATTTTCGAGCATTTTTAGCTCGAAAATCACTCAAATTCTCAAA</left_flank>
        <right_flank>AATACTCCATTTTTCACTGTAAAATGAGCCAAAAATGACGATTTTCGGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATGAGTCAAAAAGACCCGATTTTTGCGATTTTTGGGTCGAAAAATCTGGTTTTTAGTGCTCTTTTTGATCGAAAATCATGAATTTTGAGCTTTTTGGGTCGAAAAATCTCGATTTTCGGACATTTTTAGGTCAGAAACTTCGATTTTCAGGCATATCTAAGTCAAAATTCTCGATTTTTGAGGTCTGTTCGATCAAAAATCTCGTATTTCGAGCTTTTCGGGTCAAAAATCGAGATGTTCGGACATTTTTAGGTGAAAAATCGCGATTTCTGAGGTTTTCCAGGTCAAAAATCTCGATTTTAAAACTTTTTTTGGGTGGAAAATATGATTTTTGAACTTTTTTTAAACCAAAAAAGCTCGATTTTCAAAGTTTTTTGAGTAAAAAATTTTTATTTTTCATGTAAAAAGAGCTAGAAATAATAATTTTTGAGGGTTTCTAGATCAAAAATTGCAATTTTCGAGCATTTTTAGCTCGAAAATCACTCAAATTCTCAAAGAATACTCCATTTTTCACTGTAAAATGAGCCAAAAATGACGATTTTCGGGGATTTTTGGGTCATAACCCTTGCTTTCTGAGCTTTTTTGGGCAGAAAATCACTCAAATTCTCAAAAAAATGTTTCATGTTTCATGTAAAATGAGCCAAAAATGACAATTTTCGACCTTTTTTAAGTGAAAATTGCAATTTTTCAGCATTTTTAGGTCGAAAATCTCTCAAAACCTTGATTTTTTCACTGAAACTACAGTTTTTCATCGATTTTGAGCACAAACCTCTTCAAAAGTGGTGATGTTGAGCGTGTTGAAGTGACCCATAAAGTTGACACCAGACTTCTCGGTCAGCGGGAGGAATCTGCGAGATTTGGGCATTTTTTGGGGGGTTATTAGGTCGGCAAATTGGGTTTTAGGCTCAAATTTCCTGATTTTTGGACCATTTTCTGGCCTAAAAATCGAAAAAATCGACATTTTTGTGCAAGAAAATCGATTTTCAAGCTCTGAAAA</canonical>
            <polymorphic>GAAATGAGTCAAAAAGACCCGATTTTTGCGATTTTTGGGTCGAAAAATCTGGTTTTTAGTGCTCTTTTTGATCGAAAATCATGAATTTTGAGCTTTTTGGGTCGAAAAATCTCGATTTTCGGACATTTTTAGGTCAGAAACTTCGATTTTCAGGCATATCTAAGTCAAAATTCTCGATTTTTGAGGTCTGTTCGATCAAAAATCTCGTATTTCGAGCTTTTCGGGTCAAAAATCGAGATGTTCGGACATTTTTAGGTGAAAAATCGCGATTTCTGAGGTTTTCCAGGTCAAAAATCTCGATTTTAAAACTTTTTTTGGGTGGAAAATATGATTTTTGAACTTTTTTTAAACCAAAAAAGCTCGATTTTCAAAGTTTTTTGAGTAAAAAATTTTTATTTTTCATGTAAAAAGAGCTAGAAATAATAATTTTTGAGGGTTTCTAGATCAAAAATTGCAATTTTCGAGCATTTTTAGCTCGAAAATCACTCAAATTCTCAAARAATACTCCATTTTTCACTGTAAAATGAGCCAAAAATGACGATTTTCGGGGATTTTTGGGTCATAACCCTTGCTTTCTGAGCTTTTTTGGGCAGAAAATCACTCAAATTCTCAAAAAAATGTTTCATGTTTCATGTAAAATGAGCCAAAAATGACAATTTTCGACCTTTTTTAAGTGAAAATTGCAATTTTTCAGCATTTTTAGGTCGAAAATCTCTCAAAACCTTGATTTTTTCACTGAAACTACAGTTTTTCATCGATTTTGAGCACAAACCTCTTCAAAAGTGGTGATGTTGAGCGTGTTGAAGTGACCCATAAAGTTGACACCAGACTTCTCGGTCAGCGGGAGGAATCTGCGAGATTTGGGCATTTTTTGGGGGGTTATTAGGTCGGCAAATTGGGTTTTAGGCTCAAATTTCCTGATTTTTGGACCATTTTCTGGCCTAAAAATCGAAAAAATCGACATTTTTGTGCAAGAAAATCGATTTTCAAGCTCTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTTGAGGGTTTCTAGATCA</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGGTCGAAAATTGTCAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATTTTTGAGGGTTTCTAGATCAAAAATTGCAATTTTCGAGCATTTTTAGCTCGAAAATCACTCAAATTCTCAAAGAATACTCCATTTTTCACTGTAAAATGAGCCAAAAATGACGATTTTCGGGGATTTTTGGGTCATAACCCTTGCTTTCTGAGCTTTTTTGGGCAGAAAATCACTCAAATTCTCAAAAAAATGTTTCATGTTTCATGTAAAATGAGCCAAAAATGACAATTTTCGACCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>AATTTTTGAGGGTTTCTAGATCAAAAATTGCAATTTTCGAGCATTTTTAGCTCGAAAATCACTCAAATTCTCAAARAATACTCCATTTTTCACTGTAAAATGAGCCAAAAATGACGATTTTCGGGGATTTTTGGGTCATAACCCTTGCTTTCTGAGCTTTTTTGGGCAGAAAATCACTCAAATTCTCAAAAAAATGTTTCATGTTTCATGTAAAATGAGCCAAAAATGACAATTTTCGACCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8366</snp_id>
        <super_contig>c004501355.Contig1</super_contig>
        <contig_pos>11373</contig_pos>
        <strand>+</strand>
        <context>CTAGATCAAA[A/T]ATTGCAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCATGTAAAAAGAGCTAGAAATAATAATTTTTGAGGGTTTCTAGATCAAA</left_flank>
        <right_flank>ATTGCAATTTTCGAGCATTTTTAGCTCGAAAATCACTCAAATTCTCAAAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAGCAGGGATTCAGCAGTTGGCTCGTTCTGAAAATCCCGATTTTTAGTTGAAATGAGTCAAAAAGACCCGATTTTTGCGATTTTTGGGTCGAAAAATCTGGTTTTTAGTGCTCTTTTTGATCGAAAATCATGAATTTTGAGCTTTTTGGGTCGAAAAATCTCGATTTTCGGACATTTTTAGGTCAGAAACTTCGATTTTCAGGCATATCTAAGTCAAAATTCTCGATTTTTGAGGTCTGTTCGATCAAAAATCTCGTATTTCGAGCTTTTCGGGTCAAAAATCGAGATGTTCGGACATTTTTAGGTGAAAAATCGCGATTTCTGAGGTTTTCCAGGTCAAAAATCTCGATTTTAAAACTTTTTTTGGGTGGAAAATATGATTTTTGAACTTTTTTTAAACCAAAAAAGCTCGATTTTCAAAGTTTTTTGAGTAAAAAATTTTTATTTTTCATGTAAAAAGAGCTAGAAATAATAATTTTTGAGGGTTTCTAGATCAAAAATTGCAATTTTCGAGCATTTTTAGCTCGAAAATCACTCAAATTCTCAAAGAATACTCCATTTTTCACTGTAAAATGAGCCAAAAATGACGATTTTCGGGGATTTTTGGGTCATAACCCTTGCTTTCTGAGCTTTTTTGGGCAGAAAATCACTCAAATTCTCAAAAAAATGTTTCATGTTTCATGTAAAATGAGCCAAAAATGACAATTTTCGACCTTTTTTAAGTGAAAATTGCAATTTTTCAGCATTTTTAGGTCGAAAATCTCTCAAAACCTTGATTTTTTCACTGAAACTACAGTTTTTCATCGATTTTGAGCACAAACCTCTTCAAAAGTGGTGATGTTGAGCGTGTTGAAGTGACCCATAAAGTTGACACCAGACTTCTCGGTCAGCGGGAGGAATCTGCGAGATTTGGGCATTTTTTGGGGGGTTATTAGGTCGGCAAATTGGGTTTTAGGCTCAAATTTCCTGATTTTTGGACCATTTTCTGGCCTAAAAATC</canonical>
            <polymorphic>CGAGCAGGGATTCAGCAGTTGGCTCGTTCTGAAAATCCCGATTTTTAGTTGAAATGAGTCAAAAAGACCCGATTTTTGCGATTTTTGGGTCGAAAAATCTGGTTTTTAGTGCTCTTTTTGATCGAAAATCATGAATTTTGAGCTTTTTGGGTCGAAAAATCTCGATTTTCGGACATTTTTAGGTCAGAAACTTCGATTTTCAGGCATATCTAAGTCAAAATTCTCGATTTTTGAGGTCTGTTCGATCAAAAATCTCGTATTTCGAGCTTTTCGGGTCAAAAATCGAGATGTTCGGACATTTTTAGGTGAAAAATCGCGATTTCTGAGGTTTTCCAGGTCAAAAATCTCGATTTTAAAACTTTTTTTGGGTGGAAAATATGATTTTTGAACTTTTTTTAAACCAAAAAAGCTCGATTTTCAAAGTTTTTTGAGTAAAAAATTTTTATTTTTCATGTAAAAAGAGCTAGAAATAATAATTTTTGAGGGTTTCTAGATCAAAWATTGCAATTTTCGAGCATTTTTAGCTCGAAAATCACTCAAATTCTCAAAGAATACTCCATTTTTCACTGTAAAATGAGCCAAAAATGACGATTTTCGGGGATTTTTGGGTCATAACCCTTGCTTTCTGAGCTTTTTTGGGCAGAAAATCACTCAAATTCTCAAAAAAATGTTTCATGTTTCATGTAAAATGAGCCAAAAATGACAATTTTCGACCTTTTTTAAGTGAAAATTGCAATTTTTCAGCATTTTTAGGTCGAAAATCTCTCAAAACCTTGATTTTTTCACTGAAACTACAGTTTTTCATCGATTTTGAGCACAAACCTCTTCAAAAGTGGTGATGTTGAGCGTGTTGAAGTGACCCATAAAGTTGACACCAGACTTCTCGGTCAGCGGGAGGAATCTGCGAGATTTGGGCATTTTTTGGGGGGTTATTAGGTCGGCAAATTGGGTTTTAGGCTCAAATTTCCTGATTTTTGGACCATTTTCTGGCCTAAAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>219 209 133 115 85 50 39 37 34 25 24 18 6 6</canonical_bands>
                <polymorphic_bands>219 209 133 115 85 50 39 37 34 31 24 18 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGAAAATATGATTTTTGAACTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGGGTTATGACCCAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGGAAAATATGATTTTTGAACTTTTTTTAAACCAAAAAAGCTCGATTTTCAAAGTTTTTTGAGTAAAAAATTTTTATTTTTCATGTAAAAAGAGCTAGAAATAATAATTTTTGAGGGTTTCTAGATCAAAAATTGCAATTTTCGAGCATTTTTAGCTCGAAAATCACTCAAATTCTCAAAGAATACTCCATTTTTCACTGTAAAATGAGCCAAAAATGACGATTTTCGGGGATTTTTGGGTCATAACCCTT</canonical_amplicon>
		<polymorphic_amplicon>TGGAAAATATGATTTTTGAACTTTTTTTAAACCAAAAAAGCTCGATTTTCAAAGTTTTTTGAGTAAAAAATTTTTATTTTTCATGTAAAAAGAGCTAGAAATAATAATTTTTGAGGGTTTCTAGATCAAAWATTGCAATTTTCGAGCATTTTTAGCTCGAAAATCACTCAAATTCTCAAAGAATACTCCATTTTTCACTGTAAAATGAGCCAAAAATGACGATTTTCGGGGATTTTTGGGTCATAACCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8367</snp_id>
        <super_contig>c004501355.Contig1</super_contig>
        <contig_pos>11307</contig_pos>
        <strand></strand>
        <context>TTTTTTGAGT[A/C]AAAAATTTTM</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTGAACTTTTTTTAAACCAAAAAAGCTCGATTTTCAAAGTTTTTTGAGT</left_flank>
        <right_flank>AAAAATTTTTATTTTTCATGTAAAAAGAGCTAGAAATAATAATTTTTGAG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCCTCTCCTTCGGCTCCGGGCGTTGCTCCAGACGGCGTAGCTGCATGATGTGATGACGTGGCGGCGAGCAGGGATTCAGCAGTTGGCTCGTTCTGAAAATCCCGATTTTTAGTTGAAATGAGTCAAAAAGACCCGATTTTTGCGATTTTTGGGTCGAAAAATCTGGTTTTTAGTGCTCTTTTTGATCGAAAATCATGAATTTTGAGCTTTTTGGGTCGAAAAATCTCGATTTTCGGACATTTTTAGGTCAGAAACTTCGATTTTCAGGCATATCTAAGTCAAAATTCTCGATTTTTGAGGTCTGTTCGATCAAAAATCTCGTATTTCGAGCTTTTCGGGTCAAAAATCGAGATGTTCGGACATTTTTAGGTGAAAAATCGCGATTTCTGAGGTTTTCCAGGTCAAAAATCTCGATTTTAAAACTTTTTTTGGGTGGAAAATATGATTTTTGAACTTTTTTTAAACCAAAAAAGCTCGATTTTCAAAGTTTTTTGAGTAAAAAATTTTTATTTTTCATGTAAAAAGAGCTAGAAATAATAATTTTTGAGGGTTTCTAGATCAAAAATTGCAATTTTCGAGCATTTTTAGCTCGAAAATCACTCAAATTCTCAAAGAATACTCCATTTTTCACTGTAAAATGAGCCAAAAATGACGATTTTCGGGGATTTTTGGGTCATAACCCTTGCTTTCTGAGCTTTTTTGGGCAGAAAATCACTCAAATTCTCAAAAAAATGTTTCATGTTTCATGTAAAATGAGCCAAAAATGACAATTTTCGACCTTTTTTAAGTGAAAATTGCAATTTTTCAGCATTTTTAGGTCGAAAATCTCTCAAAACCTTGATTTTTTCACTGAAACTACAGTTTTTCATCGATTTTGAGCACAAACCTCTTCAAAAGTGGTGATGTTGAGCGTGTTGAAGTGACCCATAAAGTTGACACCAGACTTCTCGGTCAGCGGGAGGAATCTGCGAGATTTGGGCATTTTTTGGGGGGTTATT</canonical>
            <polymorphic>TATCCTCTCCTTCGGCTCCGGGCGTTGCTCCAGACGGCGTAGCTGCATGATGTGATGACGTGGCGGCGAGCAGGGATTCAGCAGTTGGCTCGTTCTGAAAATCCCGATTTTTAGTTGAAATGAGTCAAAAAGACCCGATTTTTGCGATTTTTGGGTCGAAAAATCTGGTTTTTAGTGCTCTTTTTGATCGAAAATCATGAATTTTGAGCTTTTTGGGTCGAAAAATCTCGATTTTCGGACATTTTTAGGTCAGAAACTTCGATTTTCAGGCATATCTAAGTCAAAATTCTCGATTTTTGAGGTCTGTTCGATCAAAAATCTCGTATTTCGAGCTTTTCGGGTCAAAAATCGAGATGTTCGGACATTTTTAGGTGAAAAATCGCGATTTCTGAGGTTTTCCAGGTCAAAAATCTCGATTTTAAAACTTTTTTTGGGTGGAAAATATGATTTTTGAACTTTTTTTAAACCAAAAAAGCTCGATTTTCAAAGTTTTTTGAGTMAAAAATTTTTATTTTTCATGTAAAAAGAGCTAGAAATAATAATTTTTGAGGGTTTCTAGATCAAAAATTGCAATTTTCGAGCATTTTTAGCTCGAAAATCACTCAAATTCTCAAAGAATACTCCATTTTTCACTGTAAAATGAGCCAAAAATGACGATTTTCGGGGATTTTTGGGTCATAACCCTTGCTTTCTGAGCTTTTTTGGGCAGAAAATCACTCAAATTCTCAAAAAAATGTTTCATGTTTCATGTAAAATGAGCCAAAAATGACAATTTTCGACCTTTTTTAAGTGAAAATTGCAATTTTTCAGCATTTTTAGGTCGAAAATCTCTCAAAACCTTGATTTTTTCACTGAAACTACAGTTTTTCATCGATTTTGAGCACAAACCTCTTCAAAAGTGGTGATGTTGAGCGTGTTGAAGTGACCCATAAAGTTGACACCAGACTTCTCGGTCAGCGGGAGGAATCTGCGAGATTTGGGCATTTTTTGGGGGGTTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAAAATATGATTTTTGAACTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGGGTTATGACCCAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGGAAAATATGATTTTTGAACTTTTTTTAAACCAAAAAAGCTCGATTTTCAAAGTTTTTTGAGTAAAAAATTTTTATTTTTCATGTAAAAAGAGCTAGAAATAATAATTTTTGAGGGTTTCTAGATCAAAAATTGCAATTTTCGAGCATTTTTAGCTCGAAAATCACTCAAATTCTCAAAGAATACTCCATTTTTCACTGTAAAATGAGCCAAAAATGACGATTTTCGGGGATTTTTGGGTCATAACCCTT</canonical_amplicon>
		<polymorphic_amplicon>TGGAAAATATGATTTTTGAACTTTTTTTAAACCAAAAAAGCTCGATTTTCAAAGTTTTTTGAGTMAAAAATTTTTATTTTTCATGTAAAAAGAGCTAGAAATAATAATTTTTGAGGGTTTCTAGATCAAAAATTGCAATTTTCGAGCATTTTTAGCTCGAAAATCACTCAAATTCTCAAAGAATACTCCATTTTTCACTGTAAAATGAGCCAAAAATGACGATTTTCGGGGATTTTTGGGTCATAACCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8368</snp_id>
        <super_contig>c004501355.Contig1</super_contig>
        <contig_pos>11223</contig_pos>
        <strand>+</strand>
        <context>AAAAATCTCG[A/T]TTTTAAAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTAGGTGAAAAATCGCGATTTCTGAGGTTTTCCAGGTCAAAAATCTCG</left_flank>
        <right_flank>TTTTAAAACTTTTTTTGGGTGGAAAATATGATTTTTGAACTTTTTTTAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCAAGCCTAAAACTGCTGAAAATCCAATTTTCAGCTCTAAAACTCACTTTGCCGCTTCCTCTTCAATCTCTCCAGTCTCCATATCCTCTCCTTCGGCTCCGGGCGTTGCTCCAGACGGCGTAGCTGCATGATGTGATGACGTGGCGGCGAGCAGGGATTCAGCAGTTGGCTCGTTCTGAAAATCCCGATTTTTAGTTGAAATGAGTCAAAAAGACCCGATTTTTGCGATTTTTGGGTCGAAAAATCTGGTTTTTAGTGCTCTTTTTGATCGAAAATCATGAATTTTGAGCTTTTTGGGTCGAAAAATCTCGATTTTCGGACATTTTTAGGTCAGAAACTTCGATTTTCAGGCATATCTAAGTCAAAATTCTCGATTTTTGAGGTCTGTTCGATCAAAAATCTCGTATTTCGAGCTTTTCGGGTCAAAAATCGAGATGTTCGGACATTTTTAGGTGAAAAATCGCGATTTCTGAGGTTTTCCAGGTCAAAAATCTCGATTTTAAAACTTTTTTTGGGTGGAAAATATGATTTTTGAACTTTTTTTAAACCAAAAAAGCTCGATTTTCAAAGTTTTTTGAGTAAAAAATTTTTATTTTTCATGTAAAAAGAGCTAGAAATAATAATTTTTGAGGGTTTCTAGATCAAAAATTGCAATTTTCGAGCATTTTTAGCTCGAAAATCACTCAAATTCTCAAAGAATACTCCATTTTTCACTGTAAAATGAGCCAAAAATGACGATTTTCGGGGATTTTTGGGTCATAACCCTTGCTTTCTGAGCTTTTTTGGGCAGAAAATCACTCAAATTCTCAAAAAAATGTTTCATGTTTCATGTAAAATGAGCCAAAAATGACAATTTTCGACCTTTTTTAAGTGAAAATTGCAATTTTTCAGCATTTTTAGGTCGAAAATCTCTCAAAACCTTGATTTTTTCACTGAAACTACAGTTTTTCATCGATTTTGAGCACAAACCTCTTCAAAAGTGGTGATGTTGAGCGTG</canonical>
            <polymorphic>TTTTCAAGCCTAAAACTGCTGAAAATCCAATTTTCAGCTCTAAAACTCACTTTGCCGCTTCCTCTTCAATCTCTCCAGTCTCCATATCCTCTCCTTCGGCTCCGGGCGTTGCTCCAGACGGCGTAGCTGCATGATGTGATGACGTGGCGGCGAGCAGGGATTCAGCAGTTGGCTCGTTCTGAAAATCCCGATTTTTAGTTGAAATGAGTCAAAAAGACCCGATTTTTGCGATTTTTGGGTCGAAAAATCTGGTTTTTAGTGCTCTTTTTGATCGAAAATCATGAATTTTGAGCTTTTTGGGTCGAAAAATCTCGATTTTCGGACATTTTTAGGTCAGAAACTTCGATTTTCAGGCATATCTAAGTCAAAATTCTCGATTTTTGAGGTCTGTTCGATCAAAAATCTCGTATTTCGAGCTTTTCGGGTCAAAAATCGAGATGTTCGGACATTTTTAGGTGAAAAATCGCGATTTCTGAGGTTTTCCAGGTCAAAAATCTCGWTTTTAAAACTTTTTTTGGGTGGAAAATATGATTTTTGAACTTTTTTTAAACCAAAAAAGCTCGATTTTCAAAGTTTTTTGAGTAAAAAATTTTTATTTTTCATGTAAAAAGAGCTAGAAATAATAATTTTTGAGGGTTTCTAGATCAAAAATTGCAATTTTCGAGCATTTTTAGCTCGAAAATCACTCAAATTCTCAAAGAATACTCCATTTTTCACTGTAAAATGAGCCAAAAATGACGATTTTCGGGGATTTTTGGGTCATAACCCTTGCTTTCTGAGCTTTTTTGGGCAGAAAATCACTCAAATTCTCAAAAAAATGTTTCATGTTTCATGTAAAATGAGCCAAAAATGACAATTTTCGACCTTTTTTAAGTGAAAATTGCAATTTTTCAGCATTTTTAGGTCGAAAATCTCTCAAAACCTTGATTTTTTCACTGAAACTACAGTTTTTCATCGATTTTGAGCACAAACCTCTTCAAAAGTGGTGATGTTGAGCGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>241 184 100 64 64 50 45 44 32 31 31 30 21 20 18 15 10</canonical_bands>
                <polymorphic_bands>241 184 128 100 50 45 44 32 31 31 30 21 20 18 15 10</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>360 144 114 93 73 62 61 31 31 31</canonical_bands>
                <polymorphic_bands>360 175 114 93 73 62 61 31 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCGATCAAAAATCTCGTATT</pcr_primer_p1>
		<pcr_primer_p2>CCTCAAAAATTATTATTTCTAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTCGATCAAAAATCTCGTATTTCGAGCTTTTCGGGTCAAAAATCGAGATGTTCGGACATTTTTAGGTGAAAAATCGCGATTTCTGAGGTTTTCCAGGTCAAAAATCTCGATTTTAAAACTTTTTTTGGGTGGAAAATATGATTTTTGAACTTTTTTTAAACCAAAAAAGCTCGATTTTCAAAGTTTTTTGAGTAAAAAATTTTTATTTTTCATGTAAAAAGAGCTAGAAATAATAATTTTTGAGG</canonical_amplicon>
		<polymorphic_amplicon>GTTCGATCAAAAATCTCGTATTTCGAGCTTTTCGGGTCAAAAATCGAGATGTTCGGACATTTTTAGGTGAAAAATCGCGATTTCTGAGGTTTTCCAGGTCAAAAATCTCGWTTTTAAAACTTTTTTTGGGTGGAAAATATGATTTTTGAACTTTTTTTAAACCAAAAAAGCTCGATTTTCAAAGTTTTTTGAGTAAAAAATTTTTATTTTTCATGTAAAAAGAGCTAGAAATAATAATTTTTGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8369</snp_id>
        <super_contig>c004501355.Contig1</super_contig>
        <contig_pos>11159</contig_pos>
        <strand>+</strand>
        <context>TCAAAAATCG[A/C]GATGTTCGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTCTGTTCGATCAAAAATCTCGTATTTCGAGCTTTTCGGGTCAAAAATCG</left_flank>
        <right_flank>GATGTTCGGACATTTTTAGGTGAAAAATCGCGATTTCTGAGGTTTTCCAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAAAATGGACGATTTTCGCATTTTTTCAGCTTGGAAAACTGATTTTTTGGCCATTTTTCAGATTTTCAAGCCTAAAACTGCTGAAAATCCAATTTTCAGCTCTAAAACTCACTTTGCCGCTTCCTCTTCAATCTCTCCAGTCTCCATATCCTCTCCTTCGGCTCCGGGCGTTGCTCCAGACGGCGTAGCTGCATGATGTGATGACGTGGCGGCGAGCAGGGATTCAGCAGTTGGCTCGTTCTGAAAATCCCGATTTTTAGTTGAAATGAGTCAAAAAGACCCGATTTTTGCGATTTTTGGGTCGAAAAATCTGGTTTTTAGTGCTCTTTTTGATCGAAAATCATGAATTTTGAGCTTTTTGGGTCGAAAAATCTCGATTTTCGGACATTTTTAGGTCAGAAACTTCGATTTTCAGGCATATCTAAGTCAAAATTCTCGATTTTTGAGGTCTGTTCGATCAAAAATCTCGTATTTCGAGCTTTTCGGGTCAAAAATCGAGATGTTCGGACATTTTTAGGTGAAAAATCGCGATTTCTGAGGTTTTCCAGGTCAAAAATCTCGATTTTAAAACTTTTTTTGGGTGGAAAATATGATTTTTGAACTTTTTTTAAACCAAAAAAGCTCGATTTTCAAAGTTTTTTGAGTAAAAAATTTTTATTTTTCATGTAAAAAGAGCTAGAAATAATAATTTTTGAGGGTTTCTAGATCAAAAATTGCAATTTTCGAGCATTTTTAGCTCGAAAATCACTCAAATTCTCAAAGAATACTCCATTTTTCACTGTAAAATGAGCCAAAAATGACGATTTTCGGGGATTTTTGGGTCATAACCCTTGCTTTCTGAGCTTTTTTGGGCAGAAAATCACTCAAATTCTCAAAAAAATGTTTCATGTTTCATGTAAAATGAGCCAAAAATGACAATTTTCGACCTTTTTTAAGTGAAAATTGCAATTTTTCAGCATTTTTAGGTCGAAAATCTCTCAAAACCTTGATTTTTTCAC</canonical>
            <polymorphic>TCCAAAATGGACGATTTTCGCATTTTTTCAGCTTGGAAAACTGATTTTTTGGCCATTTTTCAGATTTTCAAGCCTAAAACTGCTGAAAATCCAATTTTCAGCTCTAAAACTCACTTTGCCGCTTCCTCTTCAATCTCTCCAGTCTCCATATCCTCTCCTTCGGCTCCGGGCGTTGCTCCAGACGGCGTAGCTGCATGATGTGATGACGTGGCGGCGAGCAGGGATTCAGCAGTTGGCTCGTTCTGAAAATCCCGATTTTTAGTTGAAATGAGTCAAAAAGACCCGATTTTTGCGATTTTTGGGTCGAAAAATCTGGTTTTTAGTGCTCTTTTTGATCGAAAATCATGAATTTTGAGCTTTTTGGGTCGAAAAATCTCGATTTTCGGACATTTTTAGGTCAGAAACTTCGATTTTCAGGCATATCTAAGTCAAAATTCTCGATTTTTGAGGTCTGTTCGATCAAAAATCTCGTATTTCGAGCTTTTCGGGTCAAAAATCGMGATGTTCGGACATTTTTAGGTGAAAAATCGCGATTTCTGAGGTTTTCCAGGTCAAAAATCTCGATTTTAAAACTTTTTTTGGGTGGAAAATATGATTTTTGAACTTTTTTTAAACCAAAAAAGCTCGATTTTCAAAGTTTTTTGAGTAAAAAATTTTTATTTTTCATGTAAAAAGAGCTAGAAATAATAATTTTTGAGGGTTTCTAGATCAAAAATTGCAATTTTCGAGCATTTTTAGCTCGAAAATCACTCAAATTCTCAAAGAATACTCCATTTTTCACTGTAAAATGAGCCAAAAATGACGATTTTCGGGGATTTTTGGGTCATAACCCTTGCTTTCTGAGCTTTTTTGGGCAGAAAATCACTCAAATTCTCAAAAAAATGTTTCATGTTTCATGTAAAATGAGCCAAAAATGACAATTTTCGACCTTTTTTAAGTGAAAATTGCAATTTTTCAGCATTTTTAGGTCGAAAATCTCTCAAAACCTTGATTTTTTCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>305 184 100 64 64 45 32 31 31 30 30 21 20 18 15 10</canonical_bands>
                <polymorphic_bands>305 184 100 85 64 45 32 31 31 30 30 20 18 15 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCTGGTTTTTAGTGCTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTGACCTGGAAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCTGGTTTTTAGTGCTCTTTTTGATCGAAAATCATGAATTTTGAGCTTTTTGGGTCGAAAAATCTCGATTTTCGGACATTTTTAGGTCAGAAACTTCGATTTTCAGGCATATCTAAGTCAAAATTCTCGATTTTTGAGGTCTGTTCGATCAAAAATCTCGTATTTCGAGCTTTTCGGGTCAAAAATCGAGATGTTCGGACATTTTTAGGTGAAAAATCGCGATTTCTGAGGTTTTCCAGGTCAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AATCTGGTTTTTAGTGCTCTTTTTGATCGAAAATCATGAATTTTGAGCTTTTTGGGTCGAAAAATCTCGATTTTCGGACATTTTTAGGTCAGAAACTTCGATTTTCAGGCATATCTAAGTCAAAATTCTCGATTTTTGAGGTCTGTTCGATCAAAAATCTCGTATTTCGAGCTTTTCGGGTCAAAAATCGMGATGTTCGGACATTTTTAGGTGAAAAATCGCGATTTCTGAGGTTTTCCAGGTCAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8370</snp_id>
        <super_contig>c004501355.Contig1</super_contig>
        <contig_pos>11075</contig_pos>
        <strand>+</strand>
        <context>TTCGATTTTC[A/C]GGCATATCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCGAAAAATCTCGATTTTCGGACATTTTTAGGTCAGAAACTTCGATTTTC</left_flank>
        <right_flank>GGCATATCTAAGTCAAAATTCTCGATTTTTGAGGTCTGTTCGATCAAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGTTTTAGGCTTAGAAATTCCTGAAAATCCAGTTTTCAGCACTAAAATCAGATTTTTTTAGCTCTAAAATTCAATTTTCCACTCCAAAATGGACGATTTTCGCATTTTTTCAGCTTGGAAAACTGATTTTTTGGCCATTTTTCAGATTTTCAAGCCTAAAACTGCTGAAAATCCAATTTTCAGCTCTAAAACTCACTTTGCCGCTTCCTCTTCAATCTCTCCAGTCTCCATATCCTCTCCTTCGGCTCCGGGCGTTGCTCCAGACGGCGTAGCTGCATGATGTGATGACGTGGCGGCGAGCAGGGATTCAGCAGTTGGCTCGTTCTGAAAATCCCGATTTTTAGTTGAAATGAGTCAAAAAGACCCGATTTTTGCGATTTTTGGGTCGAAAAATCTGGTTTTTAGTGCTCTTTTTGATCGAAAATCATGAATTTTGAGCTTTTTGGGTCGAAAAATCTCGATTTTCGGACATTTTTAGGTCAGAAACTTCGATTTTCAGGCATATCTAAGTCAAAATTCTCGATTTTTGAGGTCTGTTCGATCAAAAATCTCGTATTTCGAGCTTTTCGGGTCAAAAATCGAGATGTTCGGACATTTTTAGGTGAAAAATCGCGATTTCTGAGGTTTTCCAGGTCAAAAATCTCGATTTTAAAACTTTTTTTGGGTGGAAAATATGATTTTTGAACTTTTTTTAAACCAAAAAAGCTCGATTTTCAAAGTTTTTTGAGTAAAAAATTTTTATTTTTCATGTAAAAAGAGCTAGAAATAATAATTTTTGAGGGTTTCTAGATCAAAAATTGCAATTTTCGAGCATTTTTAGCTCGAAAATCACTCAAATTCTCAAAGAATACTCCATTTTTCACTGTAAAATGAGCCAAAAATGACGATTTTCGGGGATTTTTGGGTCATAACCCTTGCTTTCTGAGCTTTTTTGGGCAGAAAATCACTCAAATTCTCAAAAAAATGTTTCATGTTTCATGTAAAATGAGCCAAAAATG</canonical>
            <polymorphic>TCAGTTTTAGGCTTAGAAATTCCTGAAAATCCAGTTTTCAGCACTAAAATCAGATTTTTTTAGCTCTAAAATTCAATTTTCCACTCCAAAATGGACGATTTTCGCATTTTTTCAGCTTGGAAAACTGATTTTTTGGCCATTTTTCAGATTTTCAAGCCTAAAACTGCTGAAAATCCAATTTTCAGCTCTAAAACTCACTTTGCCGCTTCCTCTTCAATCTCTCCAGTCTCCATATCCTCTCCTTCGGCTCCGGGCGTTGCTCCAGACGGCGTAGCTGCATGATGTGATGACGTGGCGGCGAGCAGGGATTCAGCAGTTGGCTCGTTCTGAAAATCCCGATTTTTAGTTGAAATGAGTCAAAAAGACCCGATTTTTGCGATTTTTGGGTCGAAAAATCTGGTTTTTAGTGCTCTTTTTGATCGAAAATCATGAATTTTGAGCTTTTTGGGTCGAAAAATCTCGATTTTCGGACATTTTTAGGTCAGAAACTTCGATTTTCMGGCATATCTAAGTCAAAATTCTCGATTTTTGAGGTCTGTTCGATCAAAAATCTCGTATTTCGAGCTTTTCGGGTCAAAAATCGAGATGTTCGGACATTTTTAGGTGAAAAATCGCGATTTCTGAGGTTTTCCAGGTCAAAAATCTCGATTTTAAAACTTTTTTTGGGTGGAAAATATGATTTTTGAACTTTTTTTAAACCAAAAAAGCTCGATTTTCAAAGTTTTTTGAGTAAAAAATTTTTATTTTTCATGTAAAAAGAGCTAGAAATAATAATTTTTGAGGGTTTCTAGATCAAAAATTGCAATTTTCGAGCATTTTTAGCTCGAAAATCACTCAAATTCTCAAAGAATACTCCATTTTTCACTGTAAAATGAGCCAAAAATGACGATTTTCGGGGATTTTTGGGTCATAACCCTTGCTTTCTGAGCTTTTTTGGGCAGAAAATCACTCAAATTCTCAAAAAAATGTTTCATGTTTCATGTAAAATGAGCCAAAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCTGGTTTTTAGTGCTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTGACCTGGAAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCTGGTTTTTAGTGCTCTTTTTGATCGAAAATCATGAATTTTGAGCTTTTTGGGTCGAAAAATCTCGATTTTCGGACATTTTTAGGTCAGAAACTTCGATTTTCAGGCATATCTAAGTCAAAATTCTCGATTTTTGAGGTCTGTTCGATCAAAAATCTCGTATTTCGAGCTTTTCGGGTCAAAAATCGAGATGTTCGGACATTTTTAGGTGAAAAATCGCGATTTCTGAGGTTTTCCAGGTCAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AATCTGGTTTTTAGTGCTCTTTTTGATCGAAAATCATGAATTTTGAGCTTTTTGGGTCGAAAAATCTCGATTTTCGGACATTTTTAGGTCAGAAACTTCGATTTTCMGGCATATCTAAGTCAAAATTCTCGATTTTTGAGGTCTGTTCGATCAAAAATCTCGTATTTCGAGCTTTTCGGGTCAAAAATCGAGATGTTCGGACATTTTTAGGTGAAAAATCGCGATTTCTGAGGTTTTCCAGGTCAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8380</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>93061</contig_pos>
        <strand>+</strand>
        <context>TGGTTTCTCC[A/G]GTTGGCTCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTCCCACTCCTCCGTAATAGTAATTGAGAATGGGATCGGTGGTTTCTCC</left_flank>
        <right_flank>GTTGGCTCTCCATCGATATAGAATATCATGCCCCAGTGCTCTTCTGGCAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCCAAAGAATTCTTCAAACGTTTTCTTCTTCAACTTGTTGGTTCTCGGAAGATGTAGAAGATTGAGAACTCTTCTATCCACATTCTTTCGGAAAGCCTCGAACTTCTCCGCATCATACCGTATCAACTCGAACAATCCATTCAACTCTAGTTCTTTAGTTCTCAAATAGATCGCCACCACTTTCTGAACCGGCAGATTTTTTGTGTCATCTGTGAGAAATTTGGAGTAAGCCTTTTGTTGCATTTGTGATAAGAGGTCTTGTTTGAAAATGTATTGATCATTCTTCAAGCTGGTGTAGATGTTAGGAGGGATCTGAAAATACAATTTAGGTAGAAAATTCCTTTGTTTAATTGTCGATTACCACTGGATATGGCGTGGAGAGTTCGGTGAGAAACTTGTTCAGATTTCCGGGAAAGTTTCGAAAGTTTTCGACTTGTTTGAACAGTGGTCCCACTCCTCCGTAATAGTAATTGAGAATGGGATCGGTGGTTTCTCCAGTTGGCTCTCCATCGATATAGAATATCATGCCCCAGTGCTCTTCTGGCAGATATGCTCGAAAAATTGCACAGTTCGACGGAAGAGACGGTTTTGTGAGAAACGACATTTCTGAAAGAAGTTTAAAGTAAATCAAGGTTATCTCGGTTCGTATAAGACATATGGAAGATTAGTTAACTGACAAAATATTTCTGATATTATGATAAACATTTTATCAGTGGACTAATTTTTAATATCTGTTACAAGAAATAAGATATAAGGGCTCAAAGTTGGCACTTATCATAAAAACATGTAATAGATTAACGCCTACTTCGTAAAGTTTGAGCCTAATTATCTTAATTCCTATGAAAGATATCAAAAATTTGTCAACTGATGAAATTTTGATGATATCATGCTAAACAGTTTATCAGTTGACCGCTTTTTGATATCTTTTACAGGAAATGAGATGTACGGGCTTAAAGTTGACACTTATCATTAAACCTGTAATAGAAGCACCTTAACA</canonical>
            <polymorphic>AATTCCAAAGAATTCTTCAAACGTTTTCTTCTTCAACTTGTTGGTTCTCGGAAGATGTAGAAGATTGAGAACTCTTCTATCCACATTCTTTCGGAAAGCCTCGAACTTCTCCGCATCATACCGTATCAACTCGAACAATCCATTCAACTCTAGTTCTTTAGTTCTCAAATAGATCGCCACCACTTTCTGAACCGGCAGATTTTTTGTGTCATCTGTGAGAAATTTGGAGTAAGCCTTTTGTTGCATTTGTGATAAGAGGTCTTGTTTGAAAATGTATTGATCATTCTTCAAGCTGGTGTAGATGTTAGGAGGGATCTGAAAATACAATTTAGGTAGAAAATTCCTTTGTTTAATTGTCGATTACCACTGGATATGGCGTGGAGAGTTCGGTGAGAAACTTGTTCAGATTTCCGGGAAAGTTTCGAAAGTTTTCGACTTGTTTGAACAGTGGTCCCACTCCTCCGTAATAGTAATTGAGAATGGGATCGGTGGTTTCTCCRGTTGGCTCTCCATCGATATAGAATATCATGCCCCAGTGCTCTTCTGGCAGATATGCTCGAAAAATTGCACAGTTCGACGGAAGAGACGGTTTTGTGAGAAACGACATTTCTGAAAGAAGTTTAAAGTAAATCAAGGTTATCTCGGTTCGTATAAGACATATGGAAGATTAGTTAACTGACAAAATATTTCTGATATTATGATAAACATTTTATCAGTGGACTAATTTTTAATATCTGTTACAAGAAATAAGATATAAGGGCTCAAAGTTGGCACTTATCATAAAAACATGTAATAGATTAACGCCTACTTCGTAAAGTTTGAGCCTAATTATCTTAATTCCTATGAAAGATATCAAAAATTTGTCAACTGATGAAATTTTGATGATATCATGCTAAACAGTTTATCAGTTGACCGCTTTTTGATATCTTTTACAGGAAATGAGATGTACGGGCTTAAAGTTGACACTTATCATTAAACCTGTAATAGAAGCACCTTAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGATCTGAAAATACAATTTAGG</pcr_primer_p1>
		<pcr_primer_p2>GAGCATATCTGCCAGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGGATCTGAAAATACAATTTAGGTAGAAAATTCCTTTGTTTAATTGTCGATTACCACTGGATATGGCGTGGAGAGTTCGGTGAGAAACTTGTTCAGATTTCCGGGAAAGTTTCGAAAGTTTTCGACTTGTTTGAACAGTGGTCCCACTCCTCCGTAATAGTAATTGAGAATGGGATCGGTGGTTTCTCCAGTTGGCTCTCCATCGATATAGAATATCATGCCCCAGTGCTCTTCTGGCAGATATGCTC</canonical_amplicon>
		<polymorphic_amplicon>GGGATCTGAAAATACAATTTAGGTAGAAAATTCCTTTGTTTAATTGTCGATTACCACTGGATATGGCGTGGAGAGTTCGGTGAGAAACTTGTTCAGATTTCCGGGAAAGTTTCGAAAGTTTTCGACTTGTTTGAACAGTGGTCCCACTCCTCCGTAATAGTAATTGAGAATGGGATCGGTGGTTTCTCCRGTTGGCTCTCCATCGATATAGAATATCATGCCCCAGTGCTCTTCTGGCAGATATGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8381</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>95355</contig_pos>
        <strand>+</strand>
        <context>ATATCATTTW[A/G]ACTTAGCAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTA</left_flank>
        <right_flank>ACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTAC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAACTTTCAAAAATTACCATTTTTAACATTTTTTCTTCCGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATGAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTATCTGAAAAAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTACTTCGATCTTTCTGGTCTGTAATACATCCATGCATTTTCGGGTGCTTAGATTTTGTAGTCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCGGATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTAAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAGAGGACAAACATGGGAGTGAGTTTCAAAATTAATGTTTCAAAGTTTAAAAGTGGACACTAATGGGGTTGTTCAGTGAGAAGTAAACCAGCAATATGCTGGCCCCGCAACGATCAAAATTGCTGAAGTTTTCTAGGTTTGCTAGCCTTTCTAGGCCATCTTCTAATAGAGGTTTTACGGTAGACTGCGCGGCCCAAGCAAATTGCTGGTTTTTCTTCCCCTCTGCATAAGAAAAAAAAAATCAGAAATTCGATGATTTTCTGCTCACTGAATAACCCTATAAATCTAGCATTACTTCAAAACCATGGTGTTTTCAGAACAGTAAATCAAACATATCAAGTAGCCTTTTGTCACAAGGCGAGAACGAAGAACACGATGGGAATACACTAATGGATGAACTT</canonical>
            <polymorphic>AAAAAACTTTCAAAAATTACCATTTTTAACATTTTTTCTTCCGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATGAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTATCTGAAAAAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTACTTCGATCTTTCTGGTCTGTAATACATCCATGCATTTTCGGGTGCTTAGATTTTGTAGTCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCGGATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTARACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAGAGGACAAACATGGGAGTGAGTTTCAAAATTAATGTTTCAAAGTTTAAAAGTGGACACTAATGGGGTTGTTCAGTGAGAAGTAAACCAGCAATATGCTGGCCCCGCAACGATCAAAATTGCTGAAGTTTTCTAGGTTTGCTAGCCTTTCTAGGCCATCTTCTAATAGAGGTTTTACGGTAGACTGCGCGGCCCAAGCAAATTGCTGGTTTTTCTTCCCCTCTGCATAAGAAAAAAAAAATCAGAAATTCGATGATTTTCTGCTCACTGAATAACCCTATAAATCTAGCATTACTTCAAAACCATGGTGTTTTCAGAACAGTAAATCAAACATATCAAGTAGCCTTTTGTCACAAGGCGAGAACGAAGAACACGATGGGAATACACTAATGGATGAACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>498 353 149</canonical_bands>
                <polymorphic_bands>647 353</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>354 235 134 115 63 51 26 15 7</canonical_bands>
                <polymorphic_bands>369 354 115 63 51 26 15 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTGCAAGTCTGTTATACACC</pcr_primer_p1>
		<pcr_primer_p2>CTGCAGAAGAAAATTTCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCGGATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTAAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAG</canonical_amplicon>
		<polymorphic_amplicon>TCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCGGATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTARACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8382</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>95354</contig_pos>
        <strand>+</strand>
        <context>TATATCATTT[A/T]RACTTAGCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTT</left_flank>
        <right_flank>AACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAAAACTTTCAAAAATTACCATTTTTAACATTTTTTCTTCCGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATGAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTATCTGAAAAAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTACTTCGATCTTTCTGGTCTGTAATACATCCATGCATTTTCGGGTGCTTAGATTTTGTAGTCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCGGATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTAAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAGAGGACAAACATGGGAGTGAGTTTCAAAATTAATGTTTCAAAGTTTAAAAGTGGACACTAATGGGGTTGTTCAGTGAGAAGTAAACCAGCAATATGCTGGCCCCGCAACGATCAAAATTGCTGAAGTTTTCTAGGTTTGCTAGCCTTTCTAGGCCATCTTCTAATAGAGGTTTTACGGTAGACTGCGCGGCCCAAGCAAATTGCTGGTTTTTCTTCCCCTCTGCATAAGAAAAAAAAAATCAGAAATTCGATGATTTTCTGCTCACTGAATAACCCTATAAATCTAGCATTACTTCAAAACCATGGTGTTTTCAGAACAGTAAATCAAACATATCAAGTAGCCTTTTGTCACAAGGCGAGAACGAAGAACACGATGGGAATACACTAATGGATGAACT</canonical>
            <polymorphic>TAAAAAACTTTCAAAAATTACCATTTTTAACATTTTTTCTTCCGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATGAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTATCTGAAAAAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTACTTCGATCTTTCTGGTCTGTAATACATCCATGCATTTTCGGGTGCTTAGATTTTGTAGTCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCGGATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTWAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAGAGGACAAACATGGGAGTGAGTTTCAAAATTAATGTTTCAAAGTTTAAAAGTGGACACTAATGGGGTTGTTCAGTGAGAAGTAAACCAGCAATATGCTGGCCCCGCAACGATCAAAATTGCTGAAGTTTTCTAGGTTTGCTAGCCTTTCTAGGCCATCTTCTAATAGAGGTTTTACGGTAGACTGCGCGGCCCAAGCAAATTGCTGGTTTTTCTTCCCCTCTGCATAAGAAAAAAAAAATCAGAAATTCGATGATTTTCTGCTCACTGAATAACCCTATAAATCTAGCATTACTTCAAAACCATGGTGTTTTCAGAACAGTAAATCAAACATATCAAGTAGCCTTTTGTCACAAGGCGAGAACGAAGAACACGATGGGAATACACTAATGGATGAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 352 149</canonical_bands>
                <polymorphic_bands>648 352</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>353 235 134 115 63 51 27 15 7</canonical_bands>
                <polymorphic_bands>369 353 115 63 51 27 15 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTGCAAGTCTGTTATACACC</pcr_primer_p1>
		<pcr_primer_p2>CTGCAGAAGAAAATTTCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCGGATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTAAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAG</canonical_amplicon>
		<polymorphic_amplicon>TCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCGGATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTWAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8383</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>95342</contig_pos>
        <strand>+</strand>
        <context>ACTTCGCTGA[A/G]CTATATCATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGA</left_flank>
        <right_flank>CTATATCATTTAAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTT</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATTTTTTCTGTAAAAAACTTTCAAAAATTACCATTTTTAACATTTTTTCTTCCGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATGAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTATCTGAAAAAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTACTTCGATCTTTCTGGTCTGTAATACATCCATGCATTTTCGGGTGCTTAGATTTTGTAGTCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCGGATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTAAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAGAGGACAAACATGGGAGTGAGTTTCAAAATTAATGTTTCAAAGTTTAAAAGTGGACACTAATGGGGTTGTTCAGTGAGAAGTAAACCAGCAATATGCTGGCCCCGCAACGATCAAAATTGCTGAAGTTTTCTAGGTTTGCTAGCCTTTCTAGGCCATCTTCTAATAGAGGTTTTACGGTAGACTGCGCGGCCCAAGCAAATTGCTGGTTTTTCTTCCCCTCTGCATAAGAAAAAAAAAATCAGAAATTCGATGATTTTCTGCTCACTGAATAACCCTATAAATCTAGCATTACTTCAAAACCATGGTGTTTTCAGAACAGTAAATCAAACATATCAAGTAGCCTTTTGTCACAAGGCGAGAACGAAGAACACGATGGGAATACACT</canonical>
            <polymorphic>AGATTTTTTCTGTAAAAAACTTTCAAAAATTACCATTTTTAACATTTTTTCTTCCGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATGAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTATCTGAAAAAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTACTTCGATCTTTCTGGTCTGTAATACATCCATGCATTTTCGGGTGCTTAGATTTTGTAGTCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCGGATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGARCTATATCATTTAAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAGAGGACAAACATGGGAGTGAGTTTCAAAATTAATGTTTCAAAGTTTAAAAGTGGACACTAATGGGGTTGTTCAGTGAGAAGTAAACCAGCAATATGCTGGCCCCGCAACGATCAAAATTGCTGAAGTTTTCTAGGTTTGCTAGCCTTTCTAGGCCATCTTCTAATAGAGGTTTTACGGTAGACTGCGCGGCCCAAGCAAATTGCTGGTTTTTCTTCCCCTCTGCATAAGAAAAAAAAAATCAGAAATTCGATGATTTTCTGCTCACTGAATAACCCTATAAATCTAGCATTACTTCAAAACCATGGTGTTTTCAGAACAGTAAATCAAACATATCAAGTAGCCTTTTGTCACAAGGCGAGAACGAAGAACACGATGGGAATACACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTGCAAGTCTGTTATACACC</pcr_primer_p1>
		<pcr_primer_p2>CTGCAGAAGAAAATTTCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCGGATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTAAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAG</canonical_amplicon>
		<polymorphic_amplicon>TCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCGGATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGARCTATATCATTTAAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8384</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>95305</contig_pos>
        <strand>+</strand>
        <context>GTTGCCTTCT[C/T]CTCTTTCCCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTCTTTCTCGGATCACCAACACATTCATCACTTTGAATGTTGCCTTCT</left_flank>
        <right_flank>CTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAACTCCTAAAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATTACCATTTTTAACATTTTTTCTTCCGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATGAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTATCTGAAAAAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTACTTCGATCTTTCTGGTCTGTAATACATCCATGCATTTTCGGGTGCTTAGATTTTGTAGTCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCGGATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTAAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAGAGGACAAACATGGGAGTGAGTTTCAAAATTAATGTTTCAAAGTTTAAAAGTGGACACTAATGGGGTTGTTCAGTGAGAAGTAAACCAGCAATATGCTGGCCCCGCAACGATCAAAATTGCTGAAGTTTTCTAGGTTTGCTAGCCTTTCTAGGCCATCTTCTAATAGAGGTTTTACGGTAGACTGCGCGGCCCAAGCAAATTGCTGGTTTTTCTTCCCCTCTGCATAAGAAAAAAAAAATCAGAAATTCGATGATTTTCTGCTCACTGAATAACCCTATAAATCTAGCATTACTTCAAAACCATGGTGTTTTCAGAACAGTAAATCAAACATATCAAGTAGCCTTTTGT</canonical>
            <polymorphic>ATAACTCCTAAAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATTACCATTTTTAACATTTTTTCTTCCGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATGAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTATCTGAAAAAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTACTTCGATCTTTCTGGTCTGTAATACATCCATGCATTTTCGGGTGCTTAGATTTTGTAGTCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCGGATCACCAACACATTCATCACTTTGAATGTTGCCTTCTYCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTAAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAGAGGACAAACATGGGAGTGAGTTTCAAAATTAATGTTTCAAAGTTTAAAAGTGGACACTAATGGGGTTGTTCAGTGAGAAGTAAACCAGCAATATGCTGGCCCCGCAACGATCAAAATTGCTGAAGTTTTCTAGGTTTGCTAGCCTTTCTAGGCCATCTTCTAATAGAGGTTTTACGGTAGACTGCGCGGCCCAAGCAAATTGCTGGTTTTTCTTCCCCTCTGCATAAGAAAAAAAAAATCAGAAATTCGATGATTTTCTGCTCACTGAATAACCCTATAAATCTAGCATTACTTCAAAACCATGGTGTTTTCAGAACAGTAAATCAAACATATCAAGTAGCCTTTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTGCAAGTCTGTTATACACC</pcr_primer_p1>
		<pcr_primer_p2>CTGCAGAAGAAAATTTCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCGGATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTAAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAG</canonical_amplicon>
		<polymorphic_amplicon>TCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCGGATCACCAACACATTCATCACTTTGAATGTTGCCTTCTYCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTAAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8385</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>95267</contig_pos>
        <strand>+</strand>
        <context>TTCTTTCTCK[G/T]ATCACCAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCG</left_flank>
        <right_flank>ATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATGTAGAGAAAATAACTGCGGTTTTTTTGAGCTATATAACTCCTAAAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATTACCATTTTTAACATTTTTTCTTCCGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATGAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTATCTGAAAAAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTACTTCGATCTTTCTGGTCTGTAATACATCCATGCATTTTCGGGTGCTTAGATTTTGTAGTCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCGGATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTAAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAGAGGACAAACATGGGAGTGAGTTTCAAAATTAATGTTTCAAAGTTTAAAAGTGGACACTAATGGGGTTGTTCAGTGAGAAGTAAACCAGCAATATGCTGGCCCCGCAACGATCAAAATTGCTGAAGTTTTCTAGGTTTGCTAGCCTTTCTAGGCCATCTTCTAATAGAGGTTTTACGGTAGACTGCGCGGCCCAAGCAAATTGCTGGTTTTTCTTCCCCTCTGCATAAGAAAAAAAAAATCAGAAATTCGATGATTTTCTGCTCACTGAATAACCCTATAAATCTAGCATTACTTCAAAACCATGGTGTTT</canonical>
            <polymorphic>AAAATGTAGAGAAAATAACTGCGGTTTTTTTGAGCTATATAACTCCTAAAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATTACCATTTTTAACATTTTTTCTTCCGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATGAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTATCTGAAAAAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTACTTCGATCTTTCTGGTCTGTAATACATCCATGCATTTTCGGGTGCTTAGATTTTGTAGTCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCGKATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTAAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAGAGGACAAACATGGGAGTGAGTTTCAAAATTAATGTTTCAAAGTTTAAAAGTGGACACTAATGGGGTTGTTCAGTGAGAAGTAAACCAGCAATATGCTGGCCCCGCAACGATCAAAATTGCTGAAGTTTTCTAGGTTTGCTAGCCTTTCTAGGCCATCTTCTAATAGAGGTTTTACGGTAGACTGCGCGGCCCAAGCAAATTGCTGGTTTTTCTTCCCCTCTGCATAAGAAAAAAAAAATCAGAAATTCGATGATTTTCTGCTCACTGAATAACCCTATAAATCTAGCATTACTTCAAAACCATGGTGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>299 252 202 112 110 25</canonical_bands>
                <polymorphic_bands>411 252 202 110 25</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>258 211 174 170 77 69 28 13</canonical_bands>
                <polymorphic_bands>344 258 211 77 69 28 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTGCAAGTCTGTTATACACC</pcr_primer_p1>
		<pcr_primer_p2>CTGCAGAAGAAAATTTCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCGGATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTAAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAG</canonical_amplicon>
		<polymorphic_amplicon>TCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCGKATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTAAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8386</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>95266</contig_pos>
        <strand>+</strand>
        <context>CTTCTTTCTC[G/T]KATCACCAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTC</left_flank>
        <right_flank>GATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAATGTAGAGAAAATAACTGCGGTTTTTTTGAGCTATATAACTCCTAAAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATTACCATTTTTAACATTTTTTCTTCCGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATGAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTATCTGAAAAAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTACTTCGATCTTTCTGGTCTGTAATACATCCATGCATTTTCGGGTGCTTAGATTTTGTAGTCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCGGATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTAAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAGAGGACAAACATGGGAGTGAGTTTCAAAATTAATGTTTCAAAGTTTAAAAGTGGACACTAATGGGGTTGTTCAGTGAGAAGTAAACCAGCAATATGCTGGCCCCGCAACGATCAAAATTGCTGAAGTTTTCTAGGTTTGCTAGCCTTTCTAGGCCATCTTCTAATAGAGGTTTTACGGTAGACTGCGCGGCCCAAGCAAATTGCTGGTTTTTCTTCCCCTCTGCATAAGAAAAAAAAAATCAGAAATTCGATGATTTTCTGCTCACTGAATAACCCTATAAATCTAGCATTACTTCAAAACCATGGTGTT</canonical>
            <polymorphic>GAAAATGTAGAGAAAATAACTGCGGTTTTTTTGAGCTATATAACTCCTAAAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATTACCATTTTTAACATTTTTTCTTCCGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATGAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTATCTGAAAAAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTACTTCGATCTTTCTGGTCTGTAATACATCCATGCATTTTCGGGTGCTTAGATTTTGTAGTCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCKGATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTAAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAGAGGACAAACATGGGAGTGAGTTTCAAAATTAATGTTTCAAAGTTTAAAAGTGGACACTAATGGGGTTGTTCAGTGAGAAGTAAACCAGCAATATGCTGGCCCCGCAACGATCAAAATTGCTGAAGTTTTCTAGGTTTGCTAGCCTTTCTAGGCCATCTTCTAATAGAGGTTTTACGGTAGACTGCGCGGCCCAAGCAAATTGCTGGTTTTTCTTCCCCTCTGCATAAGAAAAAAAAAATCAGAAATTCGATGATTTTCTGCTCACTGAATAACCCTATAAATCTAGCATTACTTCAAAACCATGGTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTGCAAGTCTGTTATACACC</pcr_primer_p1>
		<pcr_primer_p2>CTGCAGAAGAAAATTTCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCGGATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTAAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAG</canonical_amplicon>
		<polymorphic_amplicon>TCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCKGATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTAAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8387</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>95161</contig_pos>
        <strand>+</strand>
        <context>CTTCGATCKT[A/T]CTGGTCTGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTACTTCGATCTT</left_flank>
        <right_flank>CTGGTCTGTAATACATCCATGCATTTTCGGGTGCTTAGATTTTGTAGTCT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTATAATCAAAAAACAACGCAAAAATGCGATTTTGTGCAATTTCATGAGGTTTTTGAATTATAAAAAAAGTTTTATCAGACAAATTAAAAATTCATCCATAGAAAATGTAGAGAAAATAACTGCGGTTTTTTTGAGCTATATAACTCCTAAAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATTACCATTTTTAACATTTTTTCTTCCGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATGAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTATCTGAAAAAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTACTTCGATCTTTCTGGTCTGTAATACATCCATGCATTTTCGGGTGCTTAGATTTTGTAGTCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCGGATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTAAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAGAGGACAAACATGGGAGTGAGTTTCAAAATTAATGTTTCAAAGTTTAAAAGTGGACACTAATGGGGTTGTTCAGTGAGAAGTAAACCAGCAATATGCTGGCCCCGCAACGATCAAAATTGCTGAAGTTTTCTAGGTTTGCTAGCCTTTCTAGGCCATCTTCTAATAGAGGTTTTACGGTAGACTGCGCGGCCCAAGCAAATTGCT</canonical>
            <polymorphic>TTTTTTATAATCAAAAAACAACGCAAAAATGCGATTTTGTGCAATTTCATGAGGTTTTTGAATTATAAAAAAAGTTTTATCAGACAAATTAAAAATTCATCCATAGAAAATGTAGAGAAAATAACTGCGGTTTTTTTGAGCTATATAACTCCTAAAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATTACCATTTTTAACATTTTTTCTTCCGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATGAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTATCTGAAAAAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTACTTCGATCTTWCTGGTCTGTAATACATCCATGCATTTTCGGGTGCTTAGATTTTGTAGTCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCGGATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTAAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAGAGGACAAACATGGGAGTGAGTTTCAAAATTAATGTTTCAAAGTTTAAAAGTGGACACTAATGGGGTTGTTCAGTGAGAAGTAAACCAGCAATATGCTGGCCCCGCAACGATCAAAATTGCTGAAGTTTTCTAGGTTTGCTAGCCTTTCTAGGCCATCTTCTAATAGAGGTTTTACGGTAGACTGCGCGGCCCAAGCAAATTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAAATTATGGTTTTAGACCTG</pcr_primer_p1>
		<pcr_primer_p2>ATACCATGTGGTGTATAACAGACT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTATCTGAAAAAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTACTTCGATCTTTCTGGTCTGTAATACATCCATGCATTTTCGGGTGCTTAGATTTTGTAGTCTTTGCAAGTCTGTTATACACCACATGGTAT</canonical_amplicon>
		<polymorphic_amplicon>CTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTATCTGAAAAAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTACTTCGATCTTWCTGGTCTGTAATACATCCATGCATTTTCGGGTGCTTAGATTTTGTAGTCTTTGCAAGTCTGTTATACACCACATGGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8388</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>95159</contig_pos>
        <strand>+</strand>
        <context>TACTTCGATC[G/T]TWCTGGTCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTACTTCGATC</left_flank>
        <right_flank>TTCTGGTCTGTAATACATCCATGCATTTTCGGGTGCTTAGATTTTGTAGT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTTTTATAATCAAAAAACAACGCAAAAATGCGATTTTGTGCAATTTCATGAGGTTTTTGAATTATAAAAAAAGTTTTATCAGACAAATTAAAAATTCATCCATAGAAAATGTAGAGAAAATAACTGCGGTTTTTTTGAGCTATATAACTCCTAAAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATTACCATTTTTAACATTTTTTCTTCCGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATGAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTATCTGAAAAAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTACTTCGATCTTTCTGGTCTGTAATACATCCATGCATTTTCGGGTGCTTAGATTTTGTAGTCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCGGATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTAAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAGAGGACAAACATGGGAGTGAGTTTCAAAATTAATGTTTCAAAGTTTAAAAGTGGACACTAATGGGGTTGTTCAGTGAGAAGTAAACCAGCAATATGCTGGCCCCGCAACGATCAAAATTGCTGAAGTTTTCTAGGTTTGCTAGCCTTTCTAGGCCATCTTCTAATAGAGGTTTTACGGTAGACTGCGCGGCCCAAGCAAATTG</canonical>
            <polymorphic>CTTTTTTTATAATCAAAAAACAACGCAAAAATGCGATTTTGTGCAATTTCATGAGGTTTTTGAATTATAAAAAAAGTTTTATCAGACAAATTAAAAATTCATCCATAGAAAATGTAGAGAAAATAACTGCGGTTTTTTTGAGCTATATAACTCCTAAAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATTACCATTTTTAACATTTTTTCTTCCGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATGAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTATCTGAAAAAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTACTTCGATCKTTCTGGTCTGTAATACATCCATGCATTTTCGGGTGCTTAGATTTTGTAGTCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCGGATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTAAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAGAGGACAAACATGGGAGTGAGTTTCAAAATTAATGTTTCAAAGTTTAAAAGTGGACACTAATGGGGTTGTTCAGTGAGAAGTAAACCAGCAATATGCTGGCCCCGCAACGATCAAAATTGCTGAAGTTTTCTAGGTTTGCTAGCCTTTCTAGGCCATCTTCTAATAGAGGTTTTACGGTAGACTGCGCGGCCCAAGCAAATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAAATTATGGTTTTAGACCTG</pcr_primer_p1>
		<pcr_primer_p2>ATACCATGTGGTGTATAACAGACT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTATCTGAAAAAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTACTTCGATCTTTCTGGTCTGTAATACATCCATGCATTTTCGGGTGCTTAGATTTTGTAGTCTTTGCAAGTCTGTTATACACCACATGGTAT</canonical_amplicon>
		<polymorphic_amplicon>CTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTATCTGAAAAAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTACTTCGATCKTTCTGGTCTGTAATACATCCATGCATTTTCGGGTGCTTAGATTTTGTAGTCTTTGCAAGTCTGTTATACACCACATGGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8389</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>95101</contig_pos>
        <strand>+</strand>
        <context>KTATCTGAAA[A/G]AAAAAGTTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTATCTGAAA</left_flank>
        <right_flank>AAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCGCAATTATTTTCTCTACATTTTCTATGGATGAATTTTCAATTCGCCTGATAAAACTTTTTTTATAATCAAAAAACAACGCAAAAATGCGATTTTGTGCAATTTCATGAGGTTTTTGAATTATAAAAAAAGTTTTATCAGACAAATTAAAAATTCATCCATAGAAAATGTAGAGAAAATAACTGCGGTTTTTTTGAGCTATATAACTCCTAAAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATTACCATTTTTAACATTTTTTCTTCCGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATGAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTATCTGAAAAAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTACTTCGATCTTTCTGGTCTGTAATACATCCATGCATTTTCGGGTGCTTAGATTTTGTAGTCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCGGATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTAAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAGAGGACAAACATGGGAGTGAGTTTCAAAATTAATGTTTCAAAGTTTAAAAGTGGACACTAATGGGGTTGTTCAGTGAGAAGTAAACCAGCAATATGCTGGCCCCGCAACGATCAAAATTGCTGAAGTTTTCTAGGTTTGCTAGCC</canonical>
            <polymorphic>AACCGCAATTATTTTCTCTACATTTTCTATGGATGAATTTTCAATTCGCCTGATAAAACTTTTTTTATAATCAAAAAACAACGCAAAAATGCGATTTTGTGCAATTTCATGAGGTTTTTGAATTATAAAAAAAGTTTTATCAGACAAATTAAAAATTCATCCATAGAAAATGTAGAGAAAATAACTGCGGTTTTTTTGAGCTATATAACTCCTAAAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATTACCATTTTTAACATTTTTTCTTCCGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATGAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTATCTGAAARAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTACTTCGATCTTTCTGGTCTGTAATACATCCATGCATTTTCGGGTGCTTAGATTTTGTAGTCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCGGATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTAAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAGAGGACAAACATGGGAGTGAGTTTCAAAATTAATGTTTCAAAGTTTAAAAGTGGACACTAATGGGGTTGTTCAGTGAGAAGTAAACCAGCAATATGCTGGCCCCGCAACGATCAAAATTGCTGAAGTTTTCTAGGTTTGCTAGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAAATTATGGTTTTAGACCTG</pcr_primer_p1>
		<pcr_primer_p2>ATACCATGTGGTGTATAACAGACT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTATCTGAAAAAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTACTTCGATCTTTCTGGTCTGTAATACATCCATGCATTTTCGGGTGCTTAGATTTTGTAGTCTTTGCAAGTCTGTTATACACCACATGGTAT</canonical_amplicon>
		<polymorphic_amplicon>CTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTATCTGAAARAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTACTTCGATCTTTCTGGTCTGTAATACATCCATGCATTTTCGGGTGCTTAGATTTTGTAGTCTTTGCAAGTCTGTTATACACCACATGGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8390</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>117771</contig_pos>
        <strand></strand>
        <context>TGAATTCAAA[T/G]CGGTCCAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTTTCATGGTGAATTGACTCAAAAGTACTATAATTTCATTTGAATTCAAA</left_flank>
        <right_flank>CGGTCCAGTTCTATAATCGTGTTCCGTCACAAGGTAGAACAAATTTGACA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGGATCACAAAAATATCTTCTTGCAATTCTCTTCAAAAATATAATTCACTCTATTCCAGACAGCCCGTCTCGTTCTTCTTCAAAAGCGCTTCGAAAGTTTTGTTCCAACAATAACATCGGGAATGTCCACACCTCCGATCGAGAGCCATTTTGCGCACCGTCCTCAATCTGTTAGTTCGCAACCGTCGGTGAGTCAAACAGTGTTCACTTTTGCCCTTTTTTCTCTGCTCCTCTTTTCTCTGGTTTTCTATCTTTGTAGCCTCTTGCTAAGCCATTTTCACTCCCCTCTCTACACTTTTCTGGGTTAATCTTGGAGAGAGAAAGTTTGAAAACTTGAGTTTCTGGGCCAAATTATTTCTGTGTTTTTTTTTGTTTAGTGTTTTAAATTGTCTTGGGATTAGTCGTTTTTTTCTTGTATTGTCTGTTTTTTGGCAAGGAACCAACCAATTTTCATGGTGAATTGACTCAAAAGTACTATAATTTCATTTGAATTCAAATCGGTCCAGTTCTATAATCGTGTTCCGTCACAAGGTAGAACAAATTTGACAGTAAATTTTGAGACGAAATTTTTTTAATTTCAAATGTAAGTCTCAAGTGTTTTCAATTTTTTTTTTAAAATAGGGCGAAAATGTTTGCTCTTATTTTCTCGATATTTCTAGAATCGTCAACTTTGAGCTCAATTATCTCGTCTCCTGTAAGAGATATCAAAAAAAGTTCAATTGATAAATTGTTTATCACAATATCAACAACATTTTATCAGTTTACAGATTTTTGAAATCTATCACATGAACCGAGATAATTGTGCTCAAAGTTTCCTTCAGTTTTCAAATTATTTCAGTTTGGTGATCGCATTCCGTTACAAACCAGATTAGATTTGACCATAAATTTTAGGACAACATTTTTTGAATTTCAAATTTAAATCTTAAATTTGGGCTTTTCCGATTCGTTGAAAAATGTTTGCTTTTTTTTCGATATTTCTAGACTCAAGCAAGTTTACA</canonical>
            <polymorphic>AAAGGATCACAAAAATATCTTCTTGCAATTCTCTTCAAAAATATAATTCACTCTATTCCAGACAGCCCGTCTCGTTCTTCTTCAAAAGCGCTTCGAAAGTTTTGTTCCAACAATAACATCGGGAATGTCCACACCTCCGATCGAGAGCCATTTTGCGCACCGTCCTCAATCTGTTAGTTCGCAACCGTCGGTGAGTCAAACAGTGTTCACTTTTGCCCTTTTTTCTCTGCTCCTCTTTTCTCTGGTTTTCTATCTTTGTAGCCTCTTGCTAAGCCATTTTCACTCCCCTCTCTACACTTTTCTGGGTTAATCTTGGAGAGAGAAAGTTTGAAAACTTGAGTTTCTGGGCCAAATTATTTCTGTGTTTTTTTTTGTTTAGTGTTTTAAATTGTCTTGGGATTAGTCGTTTTTTTCTTGTATTGTCTGTTTTTTGGCAAGGAACCAACCAATTTTCATGGTGAATTGACTCAAAAGTACTATAATTTCATTTGAATTCAAAKCGGTCCAGTTCTATAATCGTGTTCCGTCACAAGGTAGAACAAATTTGACAGTAAATTTTGAGACGAAATTTTTTTAATTTCAAATGTAAGTCTCAAGTGTTTTCAATTTTTTTTTTAAAATAGGGCGAAAATGTTTGCTCTTATTTTCTCGATATTTCTAGAATCGTCAACTTTGAGCTCAATTATCTCGTCTCCTGTAAGAGATATCAAAAAAAGTTCAATTGATAAATTGTTTATCACAATATCAACAACATTTTATCAGTTTACAGATTTTTGAAATCTATCACATGAACCGAGATAATTGTGCTCAAAGTTTCCTTCAGTTTTCAAATTATTTCAGTTTGGTGATCGCATTCCGTTACAAACCAGATTAGATTTGACCATAAATTTTAGGACAACATTTTTTGAATTTCAAATTTAAATCTTAAATTTGGGCTTTTCCGATTCGTTGAAAAATGTTTGCTTTTTTTTCGATATTTCTAGACTCAAGCAAGTTTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTAATCTTGGAGAGAGAAAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTTACTGTCAAATTTGTTCTACCT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGTTAATCTTGGAGAGAGAAAGTTTGAAAACTTGAGTTTCTGGGCCAAATTATTTCTGTGTTTTTTTTTGTTTAGTGTTTTAAATTGTCTTGGGATTAGTCGTTTTTTTCTTGTATTGTCTGTTTTTTGGCAAGGAACCAACCAATTTTCATGGTGAATTGACTCAAAAGTACTATAATTTCATTTGAATTCAAATCGGTCCAGTTCTATAATCGTGTTCCGTCACAAGGTAGAACAAATTTGACAGTAAAT</canonical_amplicon>
		<polymorphic_amplicon>GGTTAATCTTGGAGAGAGAAAGTTTGAAAACTTGAGTTTCTGGGCCAAATTATTTCTGTGTTTTTTTTTGTTTAGTGTTTTAAATTGTCTTGGGATTAGTCGTTTTTTTCTTGTATTGTCTGTTTTTTGGCAAGGAACCAACCAATTTTCATGGTGAATTGACTCAAAAGTACTATAATTTCATTTGAATTCAAAKCGGTCCAGTTCTATAATCGTGTTCCGTCACAAGGTAGAACAAATTTGACAGTAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8391</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>117845</contig_pos>
        <strand></strand>
        <context>CGAAATTTTT[T/C]TAATTTCRAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCGTCACAAGGTAGAACAAATTTGACAGTAAATTTTGAGACGAAATTTTT</left_flank>
        <right_flank>TAATTTCAAATGTAAGTCTCAAGTGTTTTCAATTTTTTTTTTAAAATAGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTCTTCAAAAGCGCTTCGAAAGTTTTGTTCCAACAATAACATCGGGAATGTCCACACCTCCGATCGAGAGCCATTTTGCGCACCGTCCTCAATCTGTTAGTTCGCAACCGTCGGTGAGTCAAACAGTGTTCACTTTTGCCCTTTTTTCTCTGCTCCTCTTTTCTCTGGTTTTCTATCTTTGTAGCCTCTTGCTAAGCCATTTTCACTCCCCTCTCTACACTTTTCTGGGTTAATCTTGGAGAGAGAAAGTTTGAAAACTTGAGTTTCTGGGCCAAATTATTTCTGTGTTTTTTTTTGTTTAGTGTTTTAAATTGTCTTGGGATTAGTCGTTTTTTTCTTGTATTGTCTGTTTTTTGGCAAGGAACCAACCAATTTTCATGGTGAATTGACTCAAAAGTACTATAATTTCATTTGAATTCAAATCGGTCCAGTTCTATAATCGTGTTCCGTCACAAGGTAGAACAAATTTGACAGTAAATTTTGAGACGAAATTTTTTTAATTTCAAATGTAAGTCTCAAGTGTTTTCAATTTTTTTTTTAAAATAGGGCGAAAATGTTTGCTCTTATTTTCTCGATATTTCTAGAATCGTCAACTTTGAGCTCAATTATCTCGTCTCCTGTAAGAGATATCAAAAAAAGTTCAATTGATAAATTGTTTATCACAATATCAACAACATTTTATCAGTTTACAGATTTTTGAAATCTATCACATGAACCGAGATAATTGTGCTCAAAGTTTCCTTCAGTTTTCAAATTATTTCAGTTTGGTGATCGCATTCCGTTACAAACCAGATTAGATTTGACCATAAATTTTAGGACAACATTTTTTGAATTTCAAATTTAAATCTTAAATTTGGGCTTTTCCGATTCGTTGAAAAATGTTTGCTTTTTTTTCGATATTTCTAGACTCAAGCAAGTTTACAAACTGTAGGCACTCTGCTAGAATGCCACTCAACTTTGAGCCCACAAATCTCATTTTCTACAAGATATGTCAAAA</canonical>
            <polymorphic>TTCTTCTTCAAAAGCGCTTCGAAAGTTTTGTTCCAACAATAACATCGGGAATGTCCACACCTCCGATCGAGAGCCATTTTGCGCACCGTCCTCAATCTGTTAGTTCGCAACCGTCGGTGAGTCAAACAGTGTTCACTTTTGCCCTTTTTTCTCTGCTCCTCTTTTCTCTGGTTTTCTATCTTTGTAGCCTCTTGCTAAGCCATTTTCACTCCCCTCTCTACACTTTTCTGGGTTAATCTTGGAGAGAGAAAGTTTGAAAACTTGAGTTTCTGGGCCAAATTATTTCTGTGTTTTTTTTTGTTTAGTGTTTTAAATTGTCTTGGGATTAGTCGTTTTTTTCTTGTATTGTCTGTTTTTTGGCAAGGAACCAACCAATTTTCATGGTGAATTGACTCAAAAGTACTATAATTTCATTTGAATTCAAATCGGTCCAGTTCTATAATCGTGTTCCGTCACAAGGTAGAACAAATTTGACAGTAAATTTTGAGACGAAATTTTTYTAATTTCAAATGTAAGTCTCAAGTGTTTTCAATTTTTTTTTTAAAATAGGGCGAAAATGTTTGCTCTTATTTTCTCGATATTTCTAGAATCGTCAACTTTGAGCTCAATTATCTCGTCTCCTGTAAGAGATATCAAAAAAAGTTCAATTGATAAATTGTTTATCACAATATCAACAACATTTTATCAGTTTACAGATTTTTGAAATCTATCACATGAACCGAGATAATTGTGCTCAAAGTTTCCTTCAGTTTTCAAATTATTTCAGTTTGGTGATCGCATTCCGTTACAAACCAGATTAGATTTGACCATAAATTTTAGGACAACATTTTTTGAATTTCAAATTTAAATCTTAAATTTGGGCTTTTCCGATTCGTTGAAAAATGTTTGCTTTTTTTTCGATATTTCTAGACTCAAGCAAGTTTACAAACTGTAGGCACTCTGCTAGAATGCCACTCAACTTTGAGCCCACAAATCTCATTTTCTACAAGATATGTCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>303 233 190 149 77 41 7</canonical_bands>
                <polymorphic_bands>303 233 231 149 77 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTTGGGATTAGTCGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CGAGAAAATAAGAGCAAACATT</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>GTCTTGGGATTAGTCGTTTTTTTCTTGTATTGTCTGTTTTTTGGCAAGGAACCAACCAATTTTCATGGTGAATTGACTCAAAAGTACTATAATTTCATTTGAATTCAAATCGGTCCAGTTCTATAATCGTGTTCCGTCACAAGGTAGAACAAATTTGACAGTAAATTTTGAGACGAAATTTTTTTAATTTCAAATGTAAGTCTCAAGTGTTTTCAATTTTTTTTTTAAAATAGGGCGAAAATGTTTGCTCTTATTTTCTCG</canonical_amplicon>
		<polymorphic_amplicon>GTCTTGGGATTAGTCGTTTTTTTCTTGTATTGTCTGTTTTTTGGCAAGGAACCAACCAATTTTCATGGTGAATTGACTCAAAAGTACTATAATTTCATTTGAATTCAAATCGGTCCAGTTCTATAATCGTGTTCCGTCACAAGGTAGAACAAATTTGACAGTAAATTTTGAGACGAAATTTTTYTAATTTCAAATGTAAGTCTCAAGTGTTTTCAATTTTTTTTTTAAAATAGGGCGAAAATGTTTGCTCTTATTTTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8392</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>117853</contig_pos>
        <strand></strand>
        <context>TTYTAATTTC[A/G]AATGTAAGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGTAGAACAAATTTGACAGTAAATTTTGAGACGAAATTTTTTTAATTTC</left_flank>
        <right_flank>AATGTAAGTCTCAAGTGTTTTCAATTTTTTTTTTAAAATAGGGCGAAAAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAGCGCTTCGAAAGTTTTGTTCCAACAATAACATCGGGAATGTCCACACCTCCGATCGAGAGCCATTTTGCGCACCGTCCTCAATCTGTTAGTTCGCAACCGTCGGTGAGTCAAACAGTGTTCACTTTTGCCCTTTTTTCTCTGCTCCTCTTTTCTCTGGTTTTCTATCTTTGTAGCCTCTTGCTAAGCCATTTTCACTCCCCTCTCTACACTTTTCTGGGTTAATCTTGGAGAGAGAAAGTTTGAAAACTTGAGTTTCTGGGCCAAATTATTTCTGTGTTTTTTTTTGTTTAGTGTTTTAAATTGTCTTGGGATTAGTCGTTTTTTTCTTGTATTGTCTGTTTTTTGGCAAGGAACCAACCAATTTTCATGGTGAATTGACTCAAAAGTACTATAATTTCATTTGAATTCAAATCGGTCCAGTTCTATAATCGTGTTCCGTCACAAGGTAGAACAAATTTGACAGTAAATTTTGAGACGAAATTTTTTTAATTTCAAATGTAAGTCTCAAGTGTTTTCAATTTTTTTTTTAAAATAGGGCGAAAATGTTTGCTCTTATTTTCTCGATATTTCTAGAATCGTCAACTTTGAGCTCAATTATCTCGTCTCCTGTAAGAGATATCAAAAAAAGTTCAATTGATAAATTGTTTATCACAATATCAACAACATTTTATCAGTTTACAGATTTTTGAAATCTATCACATGAACCGAGATAATTGTGCTCAAAGTTTCCTTCAGTTTTCAAATTATTTCAGTTTGGTGATCGCATTCCGTTACAAACCAGATTAGATTTGACCATAAATTTTAGGACAACATTTTTTGAATTTCAAATTTAAATCTTAAATTTGGGCTTTTCCGATTCGTTGAAAAATGTTTGCTTTTTTTTCGATATTTCTAGACTCAAGCAAGTTTACAAACTGTAGGCACTCTGCTAGAATGCCACTCAACTTTGAGCCCACAAATCTCATTTTCTACAAGATATGTCAAAACGTGTTCA</canonical>
            <polymorphic>CAAAAGCGCTTCGAAAGTTTTGTTCCAACAATAACATCGGGAATGTCCACACCTCCGATCGAGAGCCATTTTGCGCACCGTCCTCAATCTGTTAGTTCGCAACCGTCGGTGAGTCAAACAGTGTTCACTTTTGCCCTTTTTTCTCTGCTCCTCTTTTCTCTGGTTTTCTATCTTTGTAGCCTCTTGCTAAGCCATTTTCACTCCCCTCTCTACACTTTTCTGGGTTAATCTTGGAGAGAGAAAGTTTGAAAACTTGAGTTTCTGGGCCAAATTATTTCTGTGTTTTTTTTTGTTTAGTGTTTTAAATTGTCTTGGGATTAGTCGTTTTTTTCTTGTATTGTCTGTTTTTTGGCAAGGAACCAACCAATTTTCATGGTGAATTGACTCAAAAGTACTATAATTTCATTTGAATTCAAATCGGTCCAGTTCTATAATCGTGTTCCGTCACAAGGTAGAACAAATTTGACAGTAAATTTTGAGACGAAATTTTTTTAATTTCRAATGTAAGTCTCAAGTGTTTTCAATTTTTTTTTTAAAATAGGGCGAAAATGTTTGCTCTTATTTTCTCGATATTTCTAGAATCGTCAACTTTGAGCTCAATTATCTCGTCTCCTGTAAGAGATATCAAAAAAAGTTCAATTGATAAATTGTTTATCACAATATCAACAACATTTTATCAGTTTACAGATTTTTGAAATCTATCACATGAACCGAGATAATTGTGCTCAAAGTTTCCTTCAGTTTTCAAATTATTTCAGTTTGGTGATCGCATTCCGTTACAAACCAGATTAGATTTGACCATAAATTTTAGGACAACATTTTTTGAATTTCAAATTTAAATCTTAAATTTGGGCTTTTCCGATTCGTTGAAAAATGTTTGCTTTTTTTTCGATATTTCTAGACTCAAGCAAGTTTACAAACTGTAGGCACTCTGCTAGAATGCCACTCAACTTTGAGCCCACAAATCTCATTTTCTACAAGATATGTCAAAACGTGTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTTGGGATTAGTCGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CGAGAAAATAAGAGCAAACATT</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>GTCTTGGGATTAGTCGTTTTTTTCTTGTATTGTCTGTTTTTTGGCAAGGAACCAACCAATTTTCATGGTGAATTGACTCAAAAGTACTATAATTTCATTTGAATTCAAATCGGTCCAGTTCTATAATCGTGTTCCGTCACAAGGTAGAACAAATTTGACAGTAAATTTTGAGACGAAATTTTTTTAATTTCAAATGTAAGTCTCAAGTGTTTTCAATTTTTTTTTTAAAATAGGGCGAAAATGTTTGCTCTTATTTTCTCG</canonical_amplicon>
		<polymorphic_amplicon>GTCTTGGGATTAGTCGTTTTTTTCTTGTATTGTCTGTTTTTTGGCAAGGAACCAACCAATTTTCATGGTGAATTGACTCAAAAGTACTATAATTTCATTTGAATTCAAATCGGTCCAGTTCTATAATCGTGTTCCGTCACAAGGTAGAACAAATTTGACAGTAAATTTTGAGACGAAATTTTTTTAATTTCRAATGTAAGTCTCAAGTGTTTTCAATTTTTTTTTTAAAATAGGGCGAAAATGTTTGCTCTTATTTTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8394</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>117898</contig_pos>
        <strand></strand>
        <context>AAAATAGGGC[G/A]AAAATGTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTTCAAATGTAAGTCTCAAGTGTTTTCAATTTTTTTTTTAAAATAGGGC</left_flank>
        <right_flank>AAAATGTTTGCTCTTATTTTCTCGATATTTCTAGAATCGTCAACTTTGAG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCACACCTCCGATCGAGAGCCATTTTGCGCACCGTCCTCAATCTGTTAGTTCGCAACCGTCGGTGAGTCAAACAGTGTTCACTTTTGCCCTTTTTTCTCTGCTCCTCTTTTCTCTGGTTTTCTATCTTTGTAGCCTCTTGCTAAGCCATTTTCACTCCCCTCTCTACACTTTTCTGGGTTAATCTTGGAGAGAGAAAGTTTGAAAACTTGAGTTTCTGGGCCAAATTATTTCTGTGTTTTTTTTTGTTTAGTGTTTTAAATTGTCTTGGGATTAGTCGTTTTTTTCTTGTATTGTCTGTTTTTTGGCAAGGAACCAACCAATTTTCATGGTGAATTGACTCAAAAGTACTATAATTTCATTTGAATTCAAATCGGTCCAGTTCTATAATCGTGTTCCGTCACAAGGTAGAACAAATTTGACAGTAAATTTTGAGACGAAATTTTTTTAATTTCAAATGTAAGTCTCAAGTGTTTTCAATTTTTTTTTTAAAATAGGGCGAAAATGTTTGCTCTTATTTTCTCGATATTTCTAGAATCGTCAACTTTGAGCTCAATTATCTCGTCTCCTGTAAGAGATATCAAAAAAAGTTCAATTGATAAATTGTTTATCACAATATCAACAACATTTTATCAGTTTACAGATTTTTGAAATCTATCACATGAACCGAGATAATTGTGCTCAAAGTTTCCTTCAGTTTTCAAATTATTTCAGTTTGGTGATCGCATTCCGTTACAAACCAGATTAGATTTGACCATAAATTTTAGGACAACATTTTTTGAATTTCAAATTTAAATCTTAAATTTGGGCTTTTCCGATTCGTTGAAAAATGTTTGCTTTTTTTTCGATATTTCTAGACTCAAGCAAGTTTACAAACTGTAGGCACTCTGCTAGAATGCCACTCAACTTTGAGCCCACAAATCTCATTTTCTACAAGATATGTCAAAACGTGTTCAACTAATAAATTGTTTATCATAATATCACCCACATTTTATACGTTG</canonical>
            <polymorphic>TCCACACCTCCGATCGAGAGCCATTTTGCGCACCGTCCTCAATCTGTTAGTTCGCAACCGTCGGTGAGTCAAACAGTGTTCACTTTTGCCCTTTTTTCTCTGCTCCTCTTTTCTCTGGTTTTCTATCTTTGTAGCCTCTTGCTAAGCCATTTTCACTCCCCTCTCTACACTTTTCTGGGTTAATCTTGGAGAGAGAAAGTTTGAAAACTTGAGTTTCTGGGCCAAATTATTTCTGTGTTTTTTTTTGTTTAGTGTTTTAAATTGTCTTGGGATTAGTCGTTTTTTTCTTGTATTGTCTGTTTTTTGGCAAGGAACCAACCAATTTTCATGGTGAATTGACTCAAAAGTACTATAATTTCATTTGAATTCAAATCGGTCCAGTTCTATAATCGTGTTCCGTCACAAGGTAGAACAAATTTGACAGTAAATTTTGAGACGAAATTTTTTTAATTTCAAATGTAAGTCTCAAGTGTTTTCAATTTTTTTTTTAAAATAGGGCRAAAATGTTTGCTCTTATTTTCTCGATATTTCTAGAATCGTCAACTTTGAGCTCAATTATCTCGTCTCCTGTAAGAGATATCAAAAAAAGTTCAATTGATAAATTGTTTATCACAATATCAACAACATTTTATCAGTTTACAGATTTTTGAAATCTATCACATGAACCGAGATAATTGTGCTCAAAGTTTCCTTCAGTTTTCAAATTATTTCAGTTTGGTGATCGCATTCCGTTACAAACCAGATTAGATTTGACCATAAATTTTAGGACAACATTTTTTGAATTTCAAATTTAAATCTTAAATTTGGGCTTTTCCGATTCGTTGAAAAATGTTTGCTTTTTTTTCGATATTTCTAGACTCAAGCAAGTTTACAAACTGTAGGCACTCTGCTAGAATGCCACTCAACTTTGAGCCCACAAATCTCATTTTCTACAAGATATGTCAAAACGTGTTCAACTAATAAATTGTTTATCATAATATCACCCACATTTTATACGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGGTAGAACAAATTTGACAGT</pcr_primer_p1>
		<pcr_primer_p2>AACTGAAATAATTTGAAAACTGAA</pcr_primer_p2>
		<pcr_amplicon_size>313</pcr_amplicon_size>
		<canonical_amplicon>CAAGGTAGAACAAATTTGACAGTAAATTTTGAGACGAAATTTTTTTAATTTCAAATGTAAGTCTCAAGTGTTTTCAATTTTTTTTTTAAAATAGGGCGAAAATGTTTGCTCTTATTTTCTCGATATTTCTAGAATCGTCAACTTTGAGCTCAATTATCTCGTCTCCTGTAAGAGATATCAAAAAAAGTTCAATTGATAAATTGTTTATCACAATATCAACAACATTTTATCAGTTTACAGATTTTTGAAATCTATCACATGAACCGAGATAATTGTGCTCAAAGTTTCCTTCAGTTTTCAAATTATTTCAGTT</canonical_amplicon>
		<polymorphic_amplicon>CAAGGTAGAACAAATTTGACAGTAAATTTTGAGACGAAATTTTTTTAATTTCAAATGTAAGTCTCAAGTGTTTTCAATTTTTTTTTTAAAATAGGGCRAAAATGTTTGCTCTTATTTTCTCGATATTTCTAGAATCGTCAACTTTGAGCTCAATTATCTCGTCTCCTGTAAGAGATATCAAAAAAAGTTCAATTGATAAATTGTTTATCACAATATCAACAACATTTTATCAGTTTACAGATTTTTGAAATCTATCACATGAACCGAGATAATTGTGCTCAAAGTTTCCTTCAGTTTTCAAATTATTTCAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8395</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>119255</contig_pos>
        <strand>+</strand>
        <context>AGCYTTGATT[A/G]AAAAATCCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATT</left_flank>
        <right_flank>AAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTTG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCCGGAAATTCAGAATCCCCAATTTCAGAGATCAATGGAAATGGACGATCAGAACGGTCACCCTCACTATCCGTCGCTTCTCAATGTCACCCACATTGATATGACTTCGCGAGCCGAAGACATTCGCGCCGGACTCATCGACACTTTTCTTAATTTGGAGCGTGTGGATAAGAATTTGTATTTGTAAGTTTTTATGGAGCTAAATAATGGCTGTAGCCTGAAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTTGCTCAAAGGACGCATCTCCCTTCCAGTTGTCTATGGGGGACAAGTCATCGGACAAGCCCTGTCCGCTGCCACAGCCACTGTCGACGTTGGATTCGTGCCCAACAGTCTTCACAGCTACTTTGTGCAATCCGGAAACGTGAATCGTCCGATTCTCTACCAAGTGGATCGCATCCGTGACGGAAAGAGTTTCTGCACTCGTCTGGTGAAGGCGTTGCAAGATGGAGAAGCCATCTTCACGGTGCAGATTTCATTCCATAGAGTGAGTCGGGGTTTTTACAATTTGACTATTTTCAAGCTTCCGGTCCGTCTGAAAATTTTTGAGAGTGTAAAACAAACCCAGATTGAAAACTTTGCATTCACAGAATTTTTGGAATATTCATAGTTTTTCAGCGATTTGTCGATTTCCGAAAGACACTTCGTTTTGGTACTGAAAACGTGAAAAACAGGTGTT</canonical>
            <polymorphic>TTCCCGGAAATTCAGAATCCCCAATTTCAGAGATCAATGGAAATGGACGATCAGAACGGTCACCCTCACTATCCGTCGCTTCTCAATGTCACCCACATTGATATGACTTCGCGAGCCGAAGACATTCGCGCCGGACTCATCGACACTTTTCTTAATTTGGAGCGTGTGGATAAGAATTTGTATTTGTAAGTTTTTATGGAGCTAAATAATGGCTGTAGCCTGAAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTRAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTTGCTCAAAGGACGCATCTCCCTTCCAGTTGTCTATGGGGGACAAGTCATCGGACAAGCCCTGTCCGCTGCCACAGCCACTGTCGACGTTGGATTCGTGCCCAACAGTCTTCACAGCTACTTTGTGCAATCCGGAAACGTGAATCGTCCGATTCTCTACCAAGTGGATCGCATCCGTGACGGAAAGAGTTTCTGCACTCGTCTGGTGAAGGCGTTGCAAGATGGAGAAGCCATCTTCACGGTGCAGATTTCATTCCATAGAGTGAGTCGGGGTTTTTACAATTTGACTATTTTCAAGCTTCCGGTCCGTCTGAAAATTTTTGAGAGTGTAAAACAAACCCAGATTGAAAACTTTGCATTCACAGAATTTTTGGAATATTCATAGTTTTTCAGCGATTTGTCGATTTCCGAAAGACACTTCGTTTTGGTACTGAAAACGTGAAAAACAGGTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 219 152 127</canonical_bands>
                <polymorphic_bands>721 152 127</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCCCTGTTATGACATTT</pcr_primer_p1>
		<pcr_primer_p2>ATAGACAACTGGAAGGGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>361</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTTGCTCAAAGGACGCATCTCCCTTCCAGTTGTCTAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTRAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTTGCTCAAAGGACGCATCTCCCTTCCAGTTGTCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8396</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>119248</contig_pos>
        <strand>+</strand>
        <context>AGCTAAAAGC[C/T]TTGATTRAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGC</left_flank>
        <right_flank>TTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTAACTTCCCGGAAATTCAGAATCCCCAATTTCAGAGATCAATGGAAATGGACGATCAGAACGGTCACCCTCACTATCCGTCGCTTCTCAATGTCACCCACATTGATATGACTTCGCGAGCCGAAGACATTCGCGCCGGACTCATCGACACTTTTCTTAATTTGGAGCGTGTGGATAAGAATTTGTATTTGTAAGTTTTTATGGAGCTAAATAATGGCTGTAGCCTGAAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTTGCTCAAAGGACGCATCTCCCTTCCAGTTGTCTATGGGGGACAAGTCATCGGACAAGCCCTGTCCGCTGCCACAGCCACTGTCGACGTTGGATTCGTGCCCAACAGTCTTCACAGCTACTTTGTGCAATCCGGAAACGTGAATCGTCCGATTCTCTACCAAGTGGATCGCATCCGTGACGGAAAGAGTTTCTGCACTCGTCTGGTGAAGGCGTTGCAAGATGGAGAAGCCATCTTCACGGTGCAGATTTCATTCCATAGAGTGAGTCGGGGTTTTTACAATTTGACTATTTTCAAGCTTCCGGTCCGTCTGAAAATTTTTGAGAGTGTAAAACAAACCCAGATTGAAAACTTTGCATTCACAGAATTTTTGGAATATTCATAGTTTTTCAGCGATTTGTCGATTTCCGAAAGACACTTCGTTTTGGTACTGAAAACGTGAAAAAC</canonical>
            <polymorphic>ATTTAACTTCCCGGAAATTCAGAATCCCCAATTTCAGAGATCAATGGAAATGGACGATCAGAACGGTCACCCTCACTATCCGTCGCTTCTCAATGTCACCCACATTGATATGACTTCGCGAGCCGAAGACATTCGCGCCGGACTCATCGACACTTTTCTTAATTTGGAGCGTGTGGATAAGAATTTGTATTTGTAAGTTTTTATGGAGCTAAATAATGGCTGTAGCCTGAAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCYTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTTGCTCAAAGGACGCATCTCCCTTCCAGTTGTCTATGGGGGACAAGTCATCGGACAAGCCCTGTCCGCTGCCACAGCCACTGTCGACGTTGGATTCGTGCCCAACAGTCTTCACAGCTACTTTGTGCAATCCGGAAACGTGAATCGTCCGATTCTCTACCAAGTGGATCGCATCCGTGACGGAAAGAGTTTCTGCACTCGTCTGGTGAAGGCGTTGCAAGATGGAGAAGCCATCTTCACGGTGCAGATTTCATTCCATAGAGTGAGTCGGGGTTTTTACAATTTGACTATTTTCAAGCTTCCGGTCCGTCTGAAAATTTTTGAGAGTGTAAAACAAACCCAGATTGAAAACTTTGCATTCACAGAATTTTTGGAATATTCATAGTTTTTCAGCGATTTGTCGATTTCCGAAAGACACTTCGTTTTGGTACTGAAAACGTGAAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>149 129 122 113 86 68 66 57 42 40 29 24 19 18 14 11 7 6</canonical_bands>
                <polymorphic_bands>149 129 122 113 86 68 66 57 42 40 29 26 24 18 14 11 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCCCTGTTATGACATTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTGACGAGCTCTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCYTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8397</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>119230</contig_pos>
        <strand>+</strand>
        <context>ATTCTCGATA[G/T]AATTTCCAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATA</left_flank>
        <right_flank>AATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCCTATTTTTTTTCTCATTTAACTTCCCGGAAATTCAGAATCCCCAATTTCAGAGATCAATGGAAATGGACGATCAGAACGGTCACCCTCACTATCCGTCGCTTCTCAATGTCACCCACATTGATATGACTTCGCGAGCCGAAGACATTCGCGCCGGACTCATCGACACTTTTCTTAATTTGGAGCGTGTGGATAAGAATTTGTATTTGTAAGTTTTTATGGAGCTAAATAATGGCTGTAGCCTGAAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTTGCTCAAAGGACGCATCTCCCTTCCAGTTGTCTATGGGGGACAAGTCATCGGACAAGCCCTGTCCGCTGCCACAGCCACTGTCGACGTTGGATTCGTGCCCAACAGTCTTCACAGCTACTTTGTGCAATCCGGAAACGTGAATCGTCCGATTCTCTACCAAGTGGATCGCATCCGTGACGGAAAGAGTTTCTGCACTCGTCTGGTGAAGGCGTTGCAAGATGGAGAAGCCATCTTCACGGTGCAGATTTCATTCCATAGAGTGAGTCGGGGTTTTTACAATTTGACTATTTTCAAGCTTCCGGTCCGTCTGAAAATTTTTGAGAGTGTAAAACAAACCCAGATTGAAAACTTTGCATTCACAGAATTTTTGGAATATTCATAGTTTTTCAGCGATTTGTCGATTTCCGAAAGACACTTCGTTTTGGT</canonical>
            <polymorphic>TCTCCTATTTTTTTTCTCATTTAACTTCCCGGAAATTCAGAATCCCCAATTTCAGAGATCAATGGAAATGGACGATCAGAACGGTCACCCTCACTATCCGTCGCTTCTCAATGTCACCCACATTGATATGACTTCGCGAGCCGAAGACATTCGCGCCGGACTCATCGACACTTTTCTTAATTTGGAGCGTGTGGATAAGAATTTGTATTTGTAAGTTTTTATGGAGCTAAATAATGGCTGTAGCCTGAAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATAKAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTTGCTCAAAGGACGCATCTCCCTTCCAGTTGTCTATGGGGGACAAGTCATCGGACAAGCCCTGTCCGCTGCCACAGCCACTGTCGACGTTGGATTCGTGCCCAACAGTCTTCACAGCTACTTTGTGCAATCCGGAAACGTGAATCGTCCGATTCTCTACCAAGTGGATCGCATCCGTGACGGAAAGAGTTTCTGCACTCGTCTGGTGAAGGCGTTGCAAGATGGAGAAGCCATCTTCACGGTGCAGATTTCATTCCATAGAGTGAGTCGGGGTTTTTACAATTTGACTATTTTCAAGCTTCCGGTCCGTCTGAAAATTTTTGAGAGTGTAAAACAAACCCAGATTGAAAACTTTGCATTCACAGAATTTTTGGAATATTCATAGTTTTTCAGCGATTTGTCGATTTCCGAAAGACACTTCGTTTTGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCCCTGTTATGACATTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTGACGAGCTCTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATAKAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8398</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>163350</contig_pos>
        <strand>+</strand>
        <context>GTTCGCTAAC[C/G]CAAAACGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGGATATGATGGATGCTGATATCGATTGGGAGAATAGTGCGTTCGCTAAC</left_flank>
        <right_flank>CAAAACGAAGGCTTGATAGAAGTGAGAACAGGATAATGAACAAATAAAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGCGGCAGAGTTTTTAGCCGATTTATTTACTAGACTATTTTATTCTTTGTGCAAAAAGAAGTGTTTAATTACTGAAAAAAGGAAATTTCATGTTTTTCGTCTTCTAAAAGCTATAGAAAACAAGTTTCCTAATTGTATAAATTTCAGAAAACATGGGGTTCGCTTCCGCTTCTCGCGAAGAGAAGCTAAAAATGATGAAGACGAATAAAACGAGAAAAACGACGAAGAACTTGAATCGTTTGGCGAAAAAGAAGAAGTTGTCCAGAGAAATTCGCGATGGAATGTCAGATATTAAAGCCAGAAAATCTGCTGACTTGCGGCAAAGAGCTGTTAATGTAAACACTATTTTCAACAAAGACAGAAAAAAATGAATTTTACAGATTGAAGACGATTTCATCGCCGACAGAGAAGCTCGCTACGAAAATGACGACGAGGAAGACTTGCCGTTGGATATGATGGATGCTGATATCGATTGGGAGAATAGTGCGTTCGCTAACGCAAAACGAAGGCTTGATAGAAGTGAGAACAGGATAATGAACAAATAAAATTGGTTGATATTTTCAGAAAGAAATGGTGGAGCAGATAGCGACGAAGACGAAGATGAAGATGACGTCGAGACAAAGAAAAGAAAATTCGCCGGACAGCTCGAAGAAGGTCATGAAGAATTGTTGCCAATCAAGCTGAAAGACGGAACACTTATCAGGCCGACCAGGGAAAAAGAAGTAGAAGAACAAGAGGAAGAAGAGAAAAGTGATATCGATGAAGGGGAAGAGGATGAGCCACACAAGGAAGATTTCTCGCATCTTTCTGCTTCTGAACTTATCACAAAACGAAGAGAATTGCTACAAGAGTTCAAAGACACAATTGCATCTCATGCCAATATGCTTTTAGCTAATCCACAAGTTAATGTAAGCTAGATATACAGCTAGAAGTGTTATGAAAATTTAATTTTTCAGATTGTTCGCCTCCGCGATCTCTACAATCTCTGCAATGGAGAA</canonical>
            <polymorphic>CCTGCGGCAGAGTTTTTAGCCGATTTATTTACTAGACTATTTTATTCTTTGTGCAAAAAGAAGTGTTTAATTACTGAAAAAAGGAAATTTCATGTTTTTCGTCTTCTAAAAGCTATAGAAAACAAGTTTCCTAATTGTATAAATTTCAGAAAACATGGGGTTCGCTTCCGCTTCTCGCGAAGAGAAGCTAAAAATGATGAAGACGAATAAAACGAGAAAAACGACGAAGAACTTGAATCGTTTGGCGAAAAAGAAGAAGTTGTCCAGAGAAATTCGCGATGGAATGTCAGATATTAAAGCCAGAAAATCTGCTGACTTGCGGCAAAGAGCTGTTAATGTAAACACTATTTTCAACAAAGACAGAAAAAAATGAATTTTACAGATTGAAGACGATTTCATCGCCGACAGAGAAGCTCGCTACGAAAATGACGACGAGGAAGACTTGCCGTTGGATATGATGGATGCTGATATCGATTGGGAGAATAGTGCGTTCGCTAACSCAAAACGAAGGCTTGATAGAAGTGAGAACAGGATAATGAACAAATAAAATTGGTTGATATTTTCAGAAAGAAATGGTGGAGCAGATAGCGACGAAGACGAAGATGAAGATGACGTCGAGACAAAGAAAAGAAAATTCGCCGGACAGCTCGAAGAAGGTCATGAAGAATTGTTGCCAATCAAGCTGAAAGACGGAACACTTATCAGGCCGACCAGGGAAAAAGAAGTAGAAGAACAAGAGGAAGAAGAGAAAAGTGATATCGATGAAGGGGAAGAGGATGAGCCACACAAGGAAGATTTCTCGCATCTTTCTGCTTCTGAACTTATCACAAAACGAAGAGAATTGCTACAAGAGTTCAAAGACACAATTGCATCTCATGCCAATATGCTTTTAGCTAATCCACAAGTTAATGTAAGCTAGATATACAGCTAGAAGTGTTATGAAAATTTAATTTTTCAGATTGTTCGCCTCCGCGATCTCTACAATCTCTGCAATGGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGCTGTTAATGTAAACACTATTTT</pcr_primer_p1>
		<pcr_primer_p2>CCATTTCTTTCTGAAAATATCAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGAGCTGTTAATGTAAACACTATTTTCAACAAAGACAGAAAAAAATGAATTTTACAGATTGAAGACGATTTCATCGCCGACAGAGAAGCTCGCTACGAAAATGACGACGAGGAAGACTTGCCGTTGGATATGATGGATGCTGATATCGATTGGGAGAATAGTGCGTTCGCTAACGCAAAACGAAGGCTTGATAGAAGTGAGAACAGGATAATGAACAAATAAAATTGGTTGATATTTTCAGAAAGAAATGG</canonical_amplicon>
		<polymorphic_amplicon>AGAGCTGTTAATGTAAACACTATTTTCAACAAAGACAGAAAAAAATGAATTTTACAGATTGAAGACGATTTCATCGCCGACAGAGAAGCTCGCTACGAAAATGACGACGAGGAAGACTTGCCGTTGGATATGATGGATGCTGATATCGATTGGGAGAATAGTGCGTTCGCTAACSCAAAACGAAGGCTTGATAGAAGTGAGAACAGGATAATGAACAAATAAAATTGGTTGATATTTTCAGAAAGAAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8399</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>163452</contig_pos>
        <strand>+</strand>
        <context>CGAAGACGAA[A/G]ATGAAGATGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTTGATATTTTCAGAAAGAAATGGTGGAGCAGATAGCGACGAAGACGAA</left_flank>
        <right_flank>ATGAAGATGACGTCGAGACAAAGAAAAGAAAATTCGCCGGACAGCTCGAA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCTAAAAGCTATAGAAAACAAGTTTCCTAATTGTATAAATTTCAGAAAACATGGGGTTCGCTTCCGCTTCTCGCGAAGAGAAGCTAAAAATGATGAAGACGAATAAAACGAGAAAAACGACGAAGAACTTGAATCGTTTGGCGAAAAAGAAGAAGTTGTCCAGAGAAATTCGCGATGGAATGTCAGATATTAAAGCCAGAAAATCTGCTGACTTGCGGCAAAGAGCTGTTAATGTAAACACTATTTTCAACAAAGACAGAAAAAAATGAATTTTACAGATTGAAGACGATTTCATCGCCGACAGAGAAGCTCGCTACGAAAATGACGACGAGGAAGACTTGCCGTTGGATATGATGGATGCTGATATCGATTGGGAGAATAGTGCGTTCGCTAACGCAAAACGAAGGCTTGATAGAAGTGAGAACAGGATAATGAACAAATAAAATTGGTTGATATTTTCAGAAAGAAATGGTGGAGCAGATAGCGACGAAGACGAAGATGAAGATGACGTCGAGACAAAGAAAAGAAAATTCGCCGGACAGCTCGAAGAAGGTCATGAAGAATTGTTGCCAATCAAGCTGAAAGACGGAACACTTATCAGGCCGACCAGGGAAAAAGAAGTAGAAGAACAAGAGGAAGAAGAGAAAAGTGATATCGATGAAGGGGAAGAGGATGAGCCACACAAGGAAGATTTCTCGCATCTTTCTGCTTCTGAACTTATCACAAAACGAAGAGAATTGCTACAAGAGTTCAAAGACACAATTGCATCTCATGCCAATATGCTTTTAGCTAATCCACAAGTTAATGTAAGCTAGATATACAGCTAGAAGTGTTATGAAAATTTAATTTTTCAGATTGTTCGCCTCCGCGATCTCTACAATCTCTGCAATGGAGAAAAAGTGCATTCACTAGTCCGAGAACCCGTACAAAAGTTGGCGATGGCTAGTACGCTTCAAGTGCTGCTTGATATTGTTCCGGGTTACGCGATTCGTGAGCAG</canonical>
            <polymorphic>CTTCTAAAAGCTATAGAAAACAAGTTTCCTAATTGTATAAATTTCAGAAAACATGGGGTTCGCTTCCGCTTCTCGCGAAGAGAAGCTAAAAATGATGAAGACGAATAAAACGAGAAAAACGACGAAGAACTTGAATCGTTTGGCGAAAAAGAAGAAGTTGTCCAGAGAAATTCGCGATGGAATGTCAGATATTAAAGCCAGAAAATCTGCTGACTTGCGGCAAAGAGCTGTTAATGTAAACACTATTTTCAACAAAGACAGAAAAAAATGAATTTTACAGATTGAAGACGATTTCATCGCCGACAGAGAAGCTCGCTACGAAAATGACGACGAGGAAGACTTGCCGTTGGATATGATGGATGCTGATATCGATTGGGAGAATAGTGCGTTCGCTAACGCAAAACGAAGGCTTGATAGAAGTGAGAACAGGATAATGAACAAATAAAATTGGTTGATATTTTCAGAAAGAAATGGTGGAGCAGATAGCGACGAAGACGAARATGAAGATGACGTCGAGACAAAGAAAAGAAAATTCGCCGGACAGCTCGAAGAAGGTCATGAAGAATTGTTGCCAATCAAGCTGAAAGACGGAACACTTATCAGGCCGACCAGGGAAAAAGAAGTAGAAGAACAAGAGGAAGAAGAGAAAAGTGATATCGATGAAGGGGAAGAGGATGAGCCACACAAGGAAGATTTCTCGCATCTTTCTGCTTCTGAACTTATCACAAAACGAAGAGAATTGCTACAAGAGTTCAAAGACACAATTGCATCTCATGCCAATATGCTTTTAGCTAATCCACAAGTTAATGTAAGCTAGATATACAGCTAGAAGTGTTATGAAAATTTAATTTTTCAGATTGTTCGCCTCCGCGATCTCTACAATCTCTGCAATGGAGAAAAAGTGCATTCACTAGTCCGAGAACCCGTACAAAAGTTGGCGATGGCTAGTACGCTTCAAGTGCTGCTTGATATTGTTCCGGGTTACGCGATTCGTGAGCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGAACAGGATAATGAACAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCCTTCATCGATATCACTTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGAGAACAGGATAATGAACAAATAAAATTGGTTGATATTTTCAGAAAGAAATGGTGGAGCAGATAGCGACGAAGACGAAGATGAAGATGACGTCGAGACAAAGAAAAGAAAATTCGCCGGACAGCTCGAAGAAGGTCATGAAGAATTGTTGCCAATCAAGCTGAAAGACGGAACACTTATCAGGCCGACCAGGGAAAAAGAAGTAGAAGAACAAGAGGAAGAAGAGAAAAGTGATATCGATGAAGGG</canonical_amplicon>
		<polymorphic_amplicon>TGAGAACAGGATAATGAACAAATAAAATTGGTTGATATTTTCAGAAAGAAATGGTGGAGCAGATAGCGACGAAGACGAARATGAAGATGACGTCGAGACAAAGAAAAGAAAATTCGCCGGACAGCTCGAAGAAGGTCATGAAGAATTGTTGCCAATCAAGCTGAAAGACGGAACACTTATCAGGCCGACCAGGGAAAAAGAAGTAGAAGAACAAGAGGAAGAAGAGAAAAGTGATATCGATGAAGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8400</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>179332</contig_pos>
        <strand>+</strand>
        <context>ATGTTAGTTT[A/T]TTWCTGGGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACAAGAACCATGTTTGGAGAGTTGGACCACGTGGAATCACATGTTAGTTT</left_flank>
        <right_flank>TTTCTGGGTTACTGTACCCTGATTCTGAAAGTTCTGAATTTCAGGTAATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCAAGTATCCAGGACGAGTGGAAAATCTAGTTCTAGCCGATCCATGGGGCTTCAATGAAATGGATCCGGAAATGATGCCCAAACTAACAAGTCGTCAGAAAAGTATATTTTGGATAATTCAACAATTCAATCCGTTGGCTGTTCTTCGACTCGCTGGTGGTTACGGTCCGACACTTATGAAACGTCTTCGACCGGATCTTGCATTGAAATATTCTGAAGATGTCTACGACTACATTTATCTAGCAAACTCCAAGAATCCAACAGGAGAAATGGTTTTCAAGTGCTTATCAGAGAATCTAGGATGGGCCAAACAGCCGATGAGTAAACGGTAGGGTTTCAGGCGATTGACCTGGATCTTAACTCAATAATTTTAGATTCCACGAGCTGGACAACACCGTCCCCGTCACATTCATTCATGGAGAGCGCAGTTGGATAGATTGGAAAAATACAAGAACCATGTTTGGAGAGTTGGACCACGTGGAATCACATGTTAGTTTTTTTCTGGGTTACTGTACCCTGATTCTGAAAGTTCTGAATTTCAGGTAATGGAAAGCGCCGGTCACCATGTGTACGCTGACGATGCCGACAAATTCGCCGAACTTGTGATTGGTTCTTTGAAAGAGGGAAAATCAAAAATTGGAAAGAAACCGACAGTAATTGTGGCCGAAGATGATGTAGTGACACCTCTTTGAACTTTATTATTTGTCAGAATGTAGCTGTACAGAAGTATTTAATGTTCAATAAAGATACGGGTTTCATTATATCATTTGTTTTGTTTTTTTGGAGAGGGAGCAGAATCCATGACACAGAATGTCTCTAGGATCGTATGAGTTTGAGTACTGGAAGCAAAGAATTATGTTAGCGAAAGAACTCGGTTCAAAGACTACTTTGTTCTATTAGAATCCCACCCTATATATGCACTTTGAGCTCGATTATCTCGGTTCCCATACGAAATATCAAAATTTTGTCAACTGATAAAATTTTGGTGATAATATGAT</canonical>
            <polymorphic>ACTCAAGTATCCAGGACGAGTGGAAAATCTAGTTCTAGCCGATCCATGGGGCTTCAATGAAATGGATCCGGAAATGATGCCCAAACTAACAAGTCGTCAGAAAAGTATATTTTGGATAATTCAACAATTCAATCCGTTGGCTGTTCTTCGACTCGCTGGTGGTTACGGTCCGACACTTATGAAACGTCTTCGACCGGATCTTGCATTGAAATATTCTGAAGATGTCTACGACTACATTTATCTAGCAAACTCCAAGAATCCAACAGGAGAAATGGTTTTCAAGTGCTTATCAGAGAATCTAGGATGGGCCAAACAGCCGATGAGTAAACGGTAGGGTTTCAGGCGATTGACCTGGATCTTAACTCAATAATTTTAGATTCCACGAGCTGGACAACACCGTCCCCGTCACATTCATTCATGGAGAGCGCAGTTGGATAGATTGGAAAAATACAAGAACCATGTTTGGAGAGTTGGACCACGTGGAATCACATGTTAGTTTWTTTCTGGGTTACTGTACCCTGATTCTGAAAGTTCTGAATTTCAGGTAATGGAAAGCGCCGGTCACCATGTGTACGCTGACGATGCCGACAAATTCGCCGAACTTGTGATTGGTTCTTTGAAAGAGGGAAAATCAAAAATTGGAAAGAAACCGACAGTAATTGTGGCCGAAGATGATGTAGTGACACCTCTTTGAACTTTATTATTTGTCAGAATGTAGCTGTACAGAAGTATTTAATGTTCAATAAAGATACGGGTTTCATTATATCATTTGTTTTGTTTTTTTGGAGAGGGAGCAGAATCCATGACACAGAATGTCTCTAGGATCGTATGAGTTTGAGTACTGGAAGCAAAGAATTATGTTAGCGAAAGAACTCGGTTCAAAGACTACTTTGTTCTATTAGAATCCCACCCTATATATGCACTTTGAGCTCGATTATCTCGGTTCCCATACGAAATATCAAAATTTTGTCAACTGATAAAATTTTGGTGATAATATGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAAAAATACAAGAACCATGT</pcr_primer_p1>
		<pcr_primer_p2>AGAGGTGTCACTACATCATCTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGAAAAATACAAGAACCATGTTTGGAGAGTTGGACCACGTGGAATCACATGTTAGTTTTTTTCTGGGTTACTGTACCCTGATTCTGAAAGTTCTGAATTTCAGGTAATGGAAAGCGCCGGTCACCATGTGTACGCTGACGATGCCGACAAATTCGCCGAACTTGTGATTGGTTCTTTGAAAGAGGGAAAATCAAAAATTGGAAAGAAACCGACAGTAATTGTGGCCGAAGATGATGTAGTGACACCTCT</canonical_amplicon>
		<polymorphic_amplicon>TGGAAAAATACAAGAACCATGTTTGGAGAGTTGGACCACGTGGAATCACATGTTAGTTTWTTTCTGGGTTACTGTACCCTGATTCTGAAAGTTCTGAATTTCAGGTAATGGAAAGCGCCGGTCACCATGTGTACGCTGACGATGCCGACAAATTCGCCGAACTTGTGATTGGTTCTTTGAAAGAGGGAAAATCAAAAATTGGAAAGAAACCGACAGTAATTGTGGCCGAAGATGATGTAGTGACACCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8401</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>179335</contig_pos>
        <strand>+</strand>
        <context>TTAGTTTWTT[A/T]CTGGGTTACT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAACCATGTTTGGAGAGTTGGACCACGTGGAATCACATGTTAGTTTTTT</left_flank>
        <right_flank>CTGGGTTACTGTACCCTGATTCTGAAAGTTCTGAATTTCAGGTAATGGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGTATCCAGGACGAGTGGAAAATCTAGTTCTAGCCGATCCATGGGGCTTCAATGAAATGGATCCGGAAATGATGCCCAAACTAACAAGTCGTCAGAAAAGTATATTTTGGATAATTCAACAATTCAATCCGTTGGCTGTTCTTCGACTCGCTGGTGGTTACGGTCCGACACTTATGAAACGTCTTCGACCGGATCTTGCATTGAAATATTCTGAAGATGTCTACGACTACATTTATCTAGCAAACTCCAAGAATCCAACAGGAGAAATGGTTTTCAAGTGCTTATCAGAGAATCTAGGATGGGCCAAACAGCCGATGAGTAAACGGTAGGGTTTCAGGCGATTGACCTGGATCTTAACTCAATAATTTTAGATTCCACGAGCTGGACAACACCGTCCCCGTCACATTCATTCATGGAGAGCGCAGTTGGATAGATTGGAAAAATACAAGAACCATGTTTGGAGAGTTGGACCACGTGGAATCACATGTTAGTTTTTTTCTGGGTTACTGTACCCTGATTCTGAAAGTTCTGAATTTCAGGTAATGGAAAGCGCCGGTCACCATGTGTACGCTGACGATGCCGACAAATTCGCCGAACTTGTGATTGGTTCTTTGAAAGAGGGAAAATCAAAAATTGGAAAGAAACCGACAGTAATTGTGGCCGAAGATGATGTAGTGACACCTCTTTGAACTTTATTATTTGTCAGAATGTAGCTGTACAGAAGTATTTAATGTTCAATAAAGATACGGGTTTCATTATATCATTTGTTTTGTTTTTTTGGAGAGGGAGCAGAATCCATGACACAGAATGTCTCTAGGATCGTATGAGTTTGAGTACTGGAAGCAAAGAATTATGTTAGCGAAAGAACTCGGTTCAAAGACTACTTTGTTCTATTAGAATCCCACCCTATATATGCACTTTGAGCTCGATTATCTCGGTTCCCATACGAAATATCAAAATTTTGTCAACTGATAAAATTTTGGTGATAATATGATAAA</canonical>
            <polymorphic>CAAGTATCCAGGACGAGTGGAAAATCTAGTTCTAGCCGATCCATGGGGCTTCAATGAAATGGATCCGGAAATGATGCCCAAACTAACAAGTCGTCAGAAAAGTATATTTTGGATAATTCAACAATTCAATCCGTTGGCTGTTCTTCGACTCGCTGGTGGTTACGGTCCGACACTTATGAAACGTCTTCGACCGGATCTTGCATTGAAATATTCTGAAGATGTCTACGACTACATTTATCTAGCAAACTCCAAGAATCCAACAGGAGAAATGGTTTTCAAGTGCTTATCAGAGAATCTAGGATGGGCCAAACAGCCGATGAGTAAACGGTAGGGTTTCAGGCGATTGACCTGGATCTTAACTCAATAATTTTAGATTCCACGAGCTGGACAACACCGTCCCCGTCACATTCATTCATGGAGAGCGCAGTTGGATAGATTGGAAAAATACAAGAACCATGTTTGGAGAGTTGGACCACGTGGAATCACATGTTAGTTTTTTWCTGGGTTACTGTACCCTGATTCTGAAAGTTCTGAATTTCAGGTAATGGAAAGCGCCGGTCACCATGTGTACGCTGACGATGCCGACAAATTCGCCGAACTTGTGATTGGTTCTTTGAAAGAGGGAAAATCAAAAATTGGAAAGAAACCGACAGTAATTGTGGCCGAAGATGATGTAGTGACACCTCTTTGAACTTTATTATTTGTCAGAATGTAGCTGTACAGAAGTATTTAATGTTCAATAAAGATACGGGTTTCATTATATCATTTGTTTTGTTTTTTTGGAGAGGGAGCAGAATCCATGACACAGAATGTCTCTAGGATCGTATGAGTTTGAGTACTGGAAGCAAAGAATTATGTTAGCGAAAGAACTCGGTTCAAAGACTACTTTGTTCTATTAGAATCCCACCCTATATATGCACTTTGAGCTCGATTATCTCGGTTCCCATACGAAATATCAAAATTTTGTCAACTGATAAAATTTTGGTGATAATATGATAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAAAAATACAAGAACCATGT</pcr_primer_p1>
		<pcr_primer_p2>AGAGGTGTCACTACATCATCTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGAAAAATACAAGAACCATGTTTGGAGAGTTGGACCACGTGGAATCACATGTTAGTTTTTTTCTGGGTTACTGTACCCTGATTCTGAAAGTTCTGAATTTCAGGTAATGGAAAGCGCCGGTCACCATGTGTACGCTGACGATGCCGACAAATTCGCCGAACTTGTGATTGGTTCTTTGAAAGAGGGAAAATCAAAAATTGGAAAGAAACCGACAGTAATTGTGGCCGAAGATGATGTAGTGACACCTCT</canonical_amplicon>
		<polymorphic_amplicon>TGGAAAAATACAAGAACCATGTTTGGAGAGTTGGACCACGTGGAATCACATGTTAGTTTTTTWCTGGGTTACTGTACCCTGATTCTGAAAGTTCTGAATTTCAGGTAATGGAAAGCGCCGGTCACCATGTGTACGCTGACGATGCCGACAAATTCGCCGAACTTGTGATTGGTTCTTTGAAAGAGGGAAAATCAAAAATTGGAAAGAAACCGACAGTAATTGTGGCCGAAGATGATGTAGTGACACCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8402</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>183603</contig_pos>
        <strand>+</strand>
        <context>TGAAGTTTTT[C/T]AACTTATACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTT</left_flank>
        <right_flank>AACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAGGAGTTTCGAATCAGGAATACCAAAAAAATCGGCAAACTTTGGGGACTCACAAAGCCAGCAGGGGCAGTTATGGGTTATGAAAGTGTGTACCACTCGCTGAGAAGGCACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGGAGTTGAGATAATTGCGCTCAAAGGGCACGTATGGAGTGGGCTTGTTTTAGAGCAAATACCGTAGTTTGTTTCCGGCTTACATGGAAGTTCATAAATTTTCTAGATTATATGTATCTAGAATACAATTGTATCTC</canonical>
            <polymorphic>ATCAGGAGTTTCGAATCAGGAATACCAAAAAAATCGGCAAACTTTGGGGACTCACAAAGCCAGCAGGGGCAGTTATGGGTTATGAAAGTGTGTACCACTCGCTGAGAAGGCACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTYAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGGAGTTGAGATAATTGCGCTCAAAGGGCACGTATGGAGTGGGCTTGTTTTAGAGCAAATACCGTAGTTTGTTTCCGGCTTACATGGAAGTTCATAAATTTTCTAGATTATATGTATCTAGAATACAATTGTATCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>505 223 168 104</canonical_bands>
                <polymorphic_bands>609 223 168</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTATCAACTTTGTTTTTGAACT</pcr_primer_p1>
		<pcr_primer_p2>TAAAACAAGCCCACTCCATA</pcr_primer_p2>
		<pcr_amplicon_size>516</pcr_amplicon_size>
		<canonical_amplicon>TTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGGAGTTGAGATAATTGCGCTCAAAGGGCACGTATGGAGTGGGCTTGTTTTA</canonical_amplicon>
		<polymorphic_amplicon>TTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTYAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGGAGTTGAGATAATTGCGCTCAAAGGGCACGTATGGAGTGGGCTTGTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8403</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>183566</contig_pos>
        <strand></strand>
        <context>AATTTTTTAA[T/A]GCCAATAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAA</left_flank>
        <right_flank>GCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAATAAGGACATCATCTGCTGGACCAACAAAACCAATCAGGAGTTTCGAATCAGGAATACCAAAAAAATCGGCAAACTTTGGGGACTCACAAAGCCAGCAGGGGCAGTTATGGGTTATGAAAGTGTGTACCACTCGCTGAGAAGGCACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGGAGTTGAGATAATTGCGCTCAAAGGGCACGTATGGAGTGGGCTTGTTTTAGAGCAAATACCGTAGTTTGTTTCCGGCTTACATGGAAGTTCATAAATT</canonical>
            <polymorphic>TCTAATAAGGACATCATCTGCTGGACCAACAAAACCAATCAGGAGTTTCGAATCAGGAATACCAAAAAAATCGGCAAACTTTGGGGACTCACAAAGCCAGCAGGGGCAGTTATGGGTTATGAAAGTGTGTACCACTCGCTGAGAAGGCACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAAWGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGGAGTTGAGATAATTGCGCTCAAAGGGCACGTATGGAGTGGGCTTGTTTTAGAGCAAATACCGTAGTTTGTTTCCGGCTTACATGGAAGTTCATAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTATCAACTTTGTTTTTGAACT</pcr_primer_p1>
		<pcr_primer_p2>TAAAACAAGCCCACTCCATA</pcr_primer_p2>
		<pcr_amplicon_size>516</pcr_amplicon_size>
		<canonical_amplicon>TTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGGAGTTGAGATAATTGCGCTCAAAGGGCACGTATGGAGTGGGCTTGTTTTA</canonical_amplicon>
		<polymorphic_amplicon>TTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAAWGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGGAGTTGAGATAATTGCGCTCAAAGGGCACGTATGGAGTGGGCTTGTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8404</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>183539</contig_pos>
        <strand></strand>
        <context>WAAAAAAAAG[G/A]ATTTTTTATG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAG</left_flank>
        <right_flank>ATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTTCACGGTCTTCTAGGTGACCCATCTAATAAGGACATCATCTGCTGGACCAACAAAACCAATCAGGAGTTTCGAATCAGGAATACCAAAAAAATCGGCAAACTTTGGGGACTCACAAAGCCAGCAGGGGCAGTTATGGGTTATGAAAGTGTGTACCACTCGCTGAGAAGGCACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGGAGTTGAGATAATTGCGCTCAAAGGGCACGTATGGAGTGGGCTTGTTTTAGAGCAAATACCGTAGTTTGTT</canonical>
            <polymorphic>TTTCTTCACGGTCTTCTAGGTGACCCATCTAATAAGGACATCATCTGCTGGACCAACAAAACCAATCAGGAGTTTCGAATCAGGAATACCAAAAAAATCGGCAAACTTTGGGGACTCACAAAGCCAGCAGGGGCAGTTATGGGTTATGAAAGTGTGTACCACTCGCTGAGAAGGCACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGRATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGGAGTTGAGATAATTGCGCTCAAAGGGCACGTATGGAGTGGGCTTGTTTTAGAGCAAATACCGTAGTTTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAAGATCGATTTGAATTTT</pcr_primer_p1>
		<pcr_primer_p2>CAGATTTCGTTCAAGTGATTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTG</canonical_amplicon>
		<polymorphic_amplicon>TGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGRATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8406</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>183527</contig_pos>
        <strand>+</strand>
        <context>TTTTTGAACT[C/T]TWAAAAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACT</left_flank>
        <right_flank>TAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAATGCTCCCTTTTCTTCACGGTCTTCTAGGTGACCCATCTAATAAGGACATCATCTGCTGGACCAACAAAACCAATCAGGAGTTTCGAATCAGGAATACCAAAAAAATCGGCAAACTTTGGGGACTCACAAAGCCAGCAGGGGCAGTTATGGGTTATGAAAGTGTGTACCACTCGCTGAGAAGGCACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGGAGTTGAGATAATTGCGCTCAAAGGGCACGTATGGAGTGGGCTTGTTTTAGAGCAAATA</canonical>
            <polymorphic>CAAATGCTCCCTTTTCTTCACGGTCTTCTAGGTGACCCATCTAATAAGGACATCATCTGCTGGACCAACAAAACCAATCAGGAGTTTCGAATCAGGAATACCAAAAAAATCGGCAAACTTTGGGGACTCACAAAGCCAGCAGGGGCAGTTATGGGTTATGAAAGTGTGTACCACTCGCTGAGAAGGCACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTYTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGGAGTTGAGATAATTGCGCTCAAAGGGCACGTATGGAGTGGGCTTGTTTTAGAGCAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>500 202 135 128 35</canonical_bands>
                <polymorphic_bands>535 202 135 128</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGAAGATCGATTTGAATTTT</pcr_primer_p1>
		<pcr_primer_p2>CAGATTTCGTTCAAGTGATTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTG</canonical_amplicon>
		<polymorphic_amplicon>TGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTYTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8407</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>183469</contig_pos>
        <strand></strand>
        <context>AATTCKKATT[T/G]KACGACTTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATT</left_flank>
        <right_flank>TACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAACTTTAAGATTAAAAAAATGAAGAAAAACGATTACAGAAATCCTCCAACCAAATTCAAATGCTCCCTTTTCTTCACGGTCTTCTAGGTGACCCATCTAATAAGGACATCATCTGCTGGACCAACAAAACCAATCAGGAGTTTCGAATCAGGAATACCAAAAAAATCGGCAAACTTTGGGGACTCACAAAGCCAGCAGGGGCAGTTATGGGTTATGAAAGTGTGTACCACTCGCTGAGAAGGCACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGG</canonical>
            <polymorphic>ATAACTTTAAGATTAAAAAAATGAAGAAAAACGATTACAGAAATCCTCCAACCAAATTCAAATGCTCCCTTTTCTTCACGGTCTTCTAGGTGACCCATCTAATAAGGACATCATCTGCTGGACCAACAAAACCAATCAGGAGTTTCGAATCAGGAATACCAAAAAAATCGGCAAACTTTGGGGACTCACAAAGCCAGCAGGGGCAGTTATGGGTTATGAAAGTGTGTACCACTCGCTGAGAAGGCACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTKTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAAGATCGATTTGAATTTT</pcr_primer_p1>
		<pcr_primer_p2>CAGATTTCGTTCAAGTGATTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTG</canonical_amplicon>
		<polymorphic_amplicon>TGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTKTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8408</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>183464</contig_pos>
        <strand></strand>
        <context>AGCGAAATTC[T/G]KATTKKACGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTC</left_flank>
        <right_flank>CATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTT</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTATAACTTTAAGATTAAAAAAATGAAGAAAAACGATTACAGAAATCCTCCAACCAAATTCAAATGCTCCCTTTTCTTCACGGTCTTCTAGGTGACCCATCTAATAAGGACATCATCTGCTGGACCAACAAAACCAATCAGGAGTTTCGAATCAGGAATACCAAAAAAATCGGCAAACTTTGGGGACTCACAAAGCCAGCAGGGGCAGTTATGGGTTATGAAAGTGTGTACCACTCGCTGAGAAGGCACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTT</canonical>
            <polymorphic>AATTTATAACTTTAAGATTAAAAAAATGAAGAAAAACGATTACAGAAATCCTCCAACCAAATTCAAATGCTCCCTTTTCTTCACGGTCTTCTAGGTGACCCATCTAATAAGGACATCATCTGCTGGACCAACAAAACCAATCAGGAGTTTCGAATCAGGAATACCAAAAAAATCGGCAAACTTTGGGGACTCACAAAGCCAGCAGGGGCAGTTATGGGTTATGAAAGTGTGTACCACTCGCTGAGAAGGCACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCKCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAAGATCGATTTGAATTTT</pcr_primer_p1>
		<pcr_primer_p2>CAGATTTCGTTCAAGTGATTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTG</canonical_amplicon>
		<polymorphic_amplicon>TGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCKCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8409</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>183407</contig_pos>
        <strand>+</strand>
        <context>ATCGATATGG[A/C]ATATAATGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGG</left_flank>
        <right_flank>ATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCG</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGATCTTTGCTTTTTGGAATCGATCGTATTTTGTGTAGTGAAAATAGAACACTGGTAATTTATAACTTTAAGATTAAAAAAATGAAGAAAAACGATTACAGAAATCCTCCAACCAAATTCAAATGCTCCCTTTTCTTCACGGTCTTCTAGGTGACCCATCTAATAAGGACATCATCTGCTGGACCAACAAAACCAATCAGGAGTTTCGAATCAGGAATACCAAAAAAATCGGCAAACTTTGGGGACTCACAAAGCCAGCAGGGGCAGTTATGGGTTATGAAAGTGTGTACCACTCGCTGAGAAGGCACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAA</canonical>
            <polymorphic>ACGATCTTTGCTTTTTGGAATCGATCGTATTTTGTGTAGTGAAAATAGAACACTGGTAATTTATAACTTTAAGATTAAAAAAATGAAGAAAAACGATTACAGAAATCCTCCAACCAAATTCAAATGCTCCCTTTTCTTCACGGTCTTCTAGGTGACCCATCTAATAAGGACATCATCTGCTGGACCAACAAAACCAATCAGGAGTTTCGAATCAGGAATACCAAAAAAATCGGCAAACTTTGGGGACTCACAAAGCCAGCAGGGGCAGTTATGGGTTATGAAAGTGTGTACCACTCGCTGAGAAGGCACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGMATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCANNNNNTGC</site>
                <isoschizomers>
                    <enzyme>ApaBI</enzyme>
                    <enzyme>BstAPI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>303 254 241 202</canonical_bands>
                <polymorphic_bands>443 303 254</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGAAGATCGATTTGAATTTT</pcr_primer_p1>
		<pcr_primer_p2>CAGATTTCGTTCAAGTGATTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTG</canonical_amplicon>
		<polymorphic_amplicon>TGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGMATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8410</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>183279</contig_pos>
        <strand>+</strand>
        <context>TTTTGAATTC[G/T]TCGTCGTCRG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTC</left_flank>
        <right_flank>TCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCAT</right_flank>
        <qual_score>134</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCATGACTTATAACAATATGTCCAGATCACTGAGAAAAAGTTGCAAGAAGCATTTATTGGAGAAAATTTATGGTAGATTTTATGAATATCGATTTGTGGACCCAGATGCCCCAGTTGAAACTACCAAACGATCTTTGCTTTTTGGAATCGATCGTATTTTGTGTAGTGAAAATAGAACACTGGTAATTTATAACTTTAAGATTAAAAAAATGAAGAAAAACGATTACAGAAATCCTCCAACCAAATTCAAATGCTCCCTTTTCTTCACGGTCTTCTAGGTGACCCATCTAATAAGGACATCATCTGCTGGACCAACAAAACCAATCAGGAGTTTCGAATCAGGAATACCAAAAAAATCGGCAAACTTTGGGGACTCACAAAGCCAGCAGGGGCAGTTATGGGTTATGAAAGTGTGTACCACTCGCTGAGAAGGCACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATA</canonical>
            <polymorphic>GTCATGACTTATAACAATATGTCCAGATCACTGAGAAAAAGTTGCAAGAAGCATTTATTGGAGAAAATTTATGGTAGATTTTATGAATATCGATTTGTGGACCCAGATGCCCCAGTTGAAACTACCAAACGATCTTTGCTTTTTGGAATCGATCGTATTTTGTGTAGTGAAAATAGAACACTGGTAATTTATAACTTTAAGATTAAAAAAATGAAGAAAAACGATTACAGAAATCCTCCAACCAAATTCAAATGCTCCCTTTTCTTCACGGTCTTCTAGGTGACCCATCTAATAAGGACATCATCTGCTGGACCAACAAAACCAATCAGGAGTTTCGAATCAGGAATACCAAAAAAATCGGCAAACTTTGGGGACTCACAAAGCCAGCAGGGGCAGTTATGGGTTATGAAAGTGTGTACCACTCGCTGAGAAGGCACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCKTCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGTTTCGAATCAGGAATAC</pcr_primer_p1>
		<pcr_primer_p2>AATCGATCTTCCAAAATCACTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAGTTTCGAATCAGGAATACCAAAAAAATCGGCAAACTTTGGGGACTCACAAAGCCAGCAGGGGCAGTTATGGGTTATGAAAGTGTGTACCACTCGCTGAGAAGGCACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATT</canonical_amplicon>
		<polymorphic_amplicon>GGAGTTTCGAATCAGGAATACCAAAAAAATCGGCAAACTTTGGGGACTCACAAAGCCAGCAGGGGCAGTTATGGGTTATGAAAGTGTGTACCACTCGCTGAGAAGGCACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCKTCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8411</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>183812</contig_pos>
        <strand>+</strand>
        <context>AGGATTCTTT[C/T]AGAGAATTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTT</left_flank>
        <right_flank>AGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGGAGTTGAGATAATTGCGCTCAAAGGGCACGTATGGAGTGGGCTTGTTTTAGAGCAAATACCGTAGTTTGTTTCCGGCTTACATGGAAGTTCATAAATTTTCTAGATTATATGTATCTAGAATACAATTGTATCTCTAGACAGAACAGACATCTTTTATAGTTCGTATAGTTCAGGTCTTTCAAAAATCTGGAATCTAGATCAAAAGCCAAAGTTCGTAACAGCAAGGAATTTATTTAGAATTTTAAAAATTGATAGCAAAACTATTCAGTATATTCTGGTGGGCTCATGAATCTTACTCGATTGTCACGTGGCATGCTCGGTGGTGGTGAGAACAGATTATCAA</canonical>
            <polymorphic>TTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTYAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGGAGTTGAGATAATTGCGCTCAAAGGGCACGTATGGAGTGGGCTTGTTTTAGAGCAAATACCGTAGTTTGTTTCCGGCTTACATGGAAGTTCATAAATTTTCTAGATTATATGTATCTAGAATACAATTGTATCTCTAGACAGAACAGACATCTTTTATAGTTCGTATAGTTCAGGTCTTTCAAAAATCTGGAATCTAGATCAAAAGCCAAAGTTCGTAACAGCAAGGAATTTATTTAGAATTTTAAAAATTGATAGCAAAACTATTCAGTATATTCTGGTGGGCTCATGAATCTTACTCGATTGTCACGTGGCATGCTCGGTGGTGGTGAGAACAGATTATCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>499 226 220 55</canonical_bands>
                <polymorphic_bands>719 226 55</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACTTGAACGAAATCTGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TAAAACAAGCCCACTCCATA</pcr_primer_p2>
		<pcr_amplicon_size>441</pcr_amplicon_size>
		<canonical_amplicon>CACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGGAGTTGAGATAATTGCGCTCAAAGGGCACGTATGGAGTGGGCTTGTTTTA</canonical_amplicon>
		<polymorphic_amplicon>CACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTYAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGGAGTTGAGATAATTGCGCTCAAAGGGCACGTATGGAGTGGGCTTGTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8438</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>197131</contig_pos>
        <strand>+</strand>
        <context>TTCTTCCCAG[C/G]AACCAGTTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATACTCATTCAAAACGATTGACCCTATTTTTCATTCTCTCTTCTTCCCAG</left_flank>
        <right_flank>AACCAGTTATTATTACACTTTTTCTAAAAACTCTTTGACGGAAAAAAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGGAGATTCTGGAATTCTGAGATTCCGAGATTCTGAAATTCTGAGATTCTGCCATTCCGATATTTCTAAATTTTGAGATTCTGAGATTCTGAGATTCTGAGATTCTAAGGTTCTGAGATTCCGAAATTCCGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAATTTCACGAATTTTGAAATTTAAAAAAAAATGTAATTTTGATATTTCTAGAACATCAGATTTTATGAGGTTCGAAAAAAATTCTCTAGGATTCTATTACAAAACAATTTGGAATTTTGAAGAACTCCGGAATAGACGATGATGTTTCCTTCAGGTTATTGTAACCTCAGCATTTCTAAACTTAGCCTCAGAACCTCGAAATTCTTTGAACTCGAAGGAATCTTTAGTCTCACCTCAAAACCTCAAAACCACGAAAACGTATACTCATTCAAAACGATTGACCCTATTTTTCATTCTCTCTTCTTCCCAGGAACCAGTTATTATTACACTTTTTCTAAAAACTCTTTGACGGAAAAAAAAGAGAAGCCCGCGGAGAAAAATTCTGACCAAACGTTTCAACAGAAAAAGAACCACGTGAGTGATGGGTGCCAGGTTATATAAAGGGACCTCAGGACGATGACTGGATGAAAGAATACGTCAACTGAAATCTCAAATTTCACACATTGGTTATTGATGTGTTCGCTTGGGGCTTCTAGGTTAGACCAAATTTCATCTAGGTGCCCAATGATTAGAAATTCAAAAAAAATTCTGGTGCTCAATTTATTTGCTCAACTAGAAAGTTATAAAGTTGAAAAGGTCAGGAATACAAAAAAAAAAAGAAAAAGAAGAAGAACCCAAAGTTTGCGGGAAAGTGGGCGTGGCCTATTTCCCTTCACTTGTATGGACGGGATACAAAGGATTACAATGGGGTTAAAATTGAGTAAGCTGAAAAAGGGAAGGAGTTGAAAATGGGCAGATAATCCAAAAAGAC</canonical>
            <polymorphic>TTCGGAGATTCTGGAATTCTGAGATTCCGAGATTCTGAAATTCTGAGATTCTGCCATTCCGATATTTCTAAATTTTGAGATTCTGAGATTCTGAGATTCTGAGATTCTAAGGTTCTGAGATTCCGAAATTCCGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAATTTCACGAATTTTGAAATTTAAAAAAAAATGTAATTTTGATATTTCTAGAACATCAGATTTTATGAGGTTCGAAAAAAATTCTCTAGGATTCTATTACAAAACAATTTGGAATTTTGAAGAACTCCGGAATAGACGATGATGTTTCCTTCAGGTTATTGTAACCTCAGCATTTCTAAACTTAGCCTCAGAACCTCGAAATTCTTTGAACTCGAAGGAATCTTTAGTCTCACCTCAAAACCTCAAAACCACGAAAACGTATACTCATTCAAAACGATTGACCCTATTTTTCATTCTCTCTTCTTCCCAGSAACCAGTTATTATTACACTTTTTCTAAAAACTCTTTGACGGAAAAAAAAGAGAAGCCCGCGGAGAAAAATTCTGACCAAACGTTTCAACAGAAAAAGAACCACGTGAGTGATGGGTGCCAGGTTATATAAAGGGACCTCAGGACGATGACTGGATGAAAGAATACGTCAACTGAAATCTCAAATTTCACACATTGGTTATTGATGTGTTCGCTTGGGGCTTCTAGGTTAGACCAAATTTCATCTAGGTGCCCAATGATTAGAAATTCAAAAAAAATTCTGGTGCTCAATTTATTTGCTCAACTAGAAAGTTATAAAGTTGAAAAGGTCAGGAATACAAAAAAAAAAAGAAAAAGAAGAAGAACCCAAAGTTTGCGGGAAAGTGGGCGTGGCCTATTTCCCTTCACTTGTATGGACGGGATACAAAGGATTACAATGGGGTTAAAATTGAGTAAGCTGAAAAAGGGAAGGAGTTGAAAATGGGCAGATAATCCAAAAAGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>497 381 122</canonical_bands>
                <polymorphic_bands>619 381</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>495 443 62</canonical_bands>
                <polymorphic_bands>557 443</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>501 252 115 114 18</canonical_bands>
                <polymorphic_bands>616 252 114 18</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>497 381 122</canonical_bands>
                <polymorphic_bands>619 381</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACCACGAAAACGTATACTCAT</pcr_primer_p1>
		<pcr_primer_p2>AATTTGAGATTTCAGTTGACGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACCACGAAAACGTATACTCATTCAAAACGATTGACCCTATTTTTCATTCTCTCTTCTTCCCAGGAACCAGTTATTATTACACTTTTTCTAAAAACTCTTTGACGGAAAAAAAAGAGAAGCCCGCGGAGAAAAATTCTGACCAAACGTTTCAACAGAAAAAGAACCACGTGAGTGATGGGTGCCAGGTTATATAAAGGGACCTCAGGACGATGACTGGATGAAAGAATACGTCAACTGAAATCTCAAATT</canonical_amplicon>
		<polymorphic_amplicon>AACCACGAAAACGTATACTCATTCAAAACGATTGACCCTATTTTTCATTCTCTCTTCTTCCCAGSAACCAGTTATTATTACACTTTTTCTAAAAACTCTTTGACGGAAAAAAAAGAGAAGCCCGCGGAGAAAAATTCTGACCAAACGTTTCAACAGAAAAAGAACCACGTGAGTGATGGGTGCCAGGTTATATAAAGGGACCTCAGGACGATGACTGGATGAAAGAATACGTCAACTGAAATCTCAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8439</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>197268</contig_pos>
        <strand>+</strand>
        <context>ATAAAGGGAC[C/T]TYAGGACGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACAGAAAAAGAACCACGTGAGTGATGGGTGCCAGGTTATATAAAGGGAC</left_flank>
        <right_flank>TCAGGACGATGACTGGATGAAAGAATACGTCAACTGAAATCTCAAATTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAATTTCACGAATTTTGAAATTTAAAAAAAAATGTAATTTTGATATTTCTAGAACATCAGATTTTATGAGGTTCGAAAAAAATTCTCTAGGATTCTATTACAAAACAATTTGGAATTTTGAAGAACTCCGGAATAGACGATGATGTTTCCTTCAGGTTATTGTAACCTCAGCATTTCTAAACTTAGCCTCAGAACCTCGAAATTCTTTGAACTCGAAGGAATCTTTAGTCTCACCTCAAAACCTCAAAACCACGAAAACGTATACTCATTCAAAACGATTGACCCTATTTTTCATTCTCTCTTCTTCCCAGGAACCAGTTATTATTACACTTTTTCTAAAAACTCTTTGACGGAAAAAAAAGAGAAGCCCGCGGAGAAAAATTCTGACCAAACGTTTCAACAGAAAAAGAACCACGTGAGTGATGGGTGCCAGGTTATATAAAGGGACCTCAGGACGATGACTGGATGAAAGAATACGTCAACTGAAATCTCAAATTTCACACATTGGTTATTGATGTGTTCGCTTGGGGCTTCTAGGTTAGACCAAATTTCATCTAGGTGCCCAATGATTAGAAATTCAAAAAAAATTCTGGTGCTCAATTTATTTGCTCAACTAGAAAGTTATAAAGTTGAAAAGGTCAGGAATACAAAAAAAAAAAGAAAAAGAAGAAGAACCCAAAGTTTGCGGGAAAGTGGGCGTGGCCTATTTCCCTTCACTTGTATGGACGGGATACAAAGGATTACAATGGGGTTAAAATTGAGTAAGCTGAAAAAGGGAAGGAGTTGAAAATGGGCAGATAATCCAAAAAGACAGACAGAGAAAGAAAAAAAAAGAAAACAGAGCAAAATGATTGATTGTACTTGAATAGAACGAGAAAAAGAAGAAGCTACAGAAAGTAAGAAAAAAAGAAGTATGACAAAAAATGAGAGTTCGTCAAAGTTAATCTTC</canonical>
            <polymorphic>TCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAATTTCACGAATTTTGAAATTTAAAAAAAAATGTAATTTTGATATTTCTAGAACATCAGATTTTATGAGGTTCGAAAAAAATTCTCTAGGATTCTATTACAAAACAATTTGGAATTTTGAAGAACTCCGGAATAGACGATGATGTTTCCTTCAGGTTATTGTAACCTCAGCATTTCTAAACTTAGCCTCAGAACCTCGAAATTCTTTGAACTCGAAGGAATCTTTAGTCTCACCTCAAAACCTCAAAACCACGAAAACGTATACTCATTCAAAACGATTGACCCTATTTTTCATTCTCTCTTCTTCCCAGGAACCAGTTATTATTACACTTTTTCTAAAAACTCTTTGACGGAAAAAAAAGAGAAGCCCGCGGAGAAAAATTCTGACCAAACGTTTCAACAGAAAAAGAACCACGTGAGTGATGGGTGCCAGGTTATATAAAGGGACYTCAGGACGATGACTGGATGAAAGAATACGTCAACTGAAATCTCAAATTTCACACATTGGTTATTGATGTGTTCGCTTGGGGCTTCTAGGTTAGACCAAATTTCATCTAGGTGCCCAATGATTAGAAATTCAAAAAAAATTCTGGTGCTCAATTTATTTGCTCAACTAGAAAGTTATAAAGTTGAAAAGGTCAGGAATACAAAAAAAAAAAGAAAAAGAAGAAGAACCCAAAGTTTGCGGGAAAGTGGGCGTGGCCTATTTCCCTTCACTTGTATGGACGGGATACAAAGGATTACAATGGGGTTAAAATTGAGTAAGCTGAAAAAGGGAAGGAGTTGAAAATGGGCAGATAATCCAAAAAGACAGACAGAGAAAGAAAAAAAAAGAAAACAGAGCAAAATGATTGATTGTACTTGAATAGAACGAGAAAAAGAAGAAGCTACAGAAAGTAAGAAAAAAAGAAGTATGACAAAAAATGAGAGTTCGTCAAAGTTAATCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCTNAGG</site>
                <isoschizomers>
                    <enzyme>AocI</enzyme>
                    <enzyme>AxyI</enzyme>
                    <enzyme>Bse21I</enzyme>
                    <enzyme>Bsu36I</enzyme>
                    <enzyme>CvnI</enzyme>
                    <enzyme>Eco81I</enzyme>
                    <enzyme>SauI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>389 364 115 114 18</canonical_bands>
                <polymorphic_bands>389 364 132 115</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 261 176 16 15 8 8 8 6 2</canonical_bands>
                <polymorphic_bands>761 176 16 15 8 8 8 6 2</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTCAACAGAAAAAGAACCAC</pcr_primer_p1>
		<pcr_primer_p2>CCTGACCTTTTCAACTTTATAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTCAACAGAAAAAGAACCACGTGAGTGATGGGTGCCAGGTTATATAAAGGGACCTCAGGACGATGACTGGATGAAAGAATACGTCAACTGAAATCTCAAATTTCACACATTGGTTATTGATGTGTTCGCTTGGGGCTTCTAGGTTAGACCAAATTTCATCTAGGTGCCCAATGATTAGAAATTCAAAAAAAATTCTGGTGCTCAATTTATTTGCTCAACTAGAAAGTTATAAAGTTGAAAAGGTCAGG</canonical_amplicon>
		<polymorphic_amplicon>GTTTCAACAGAAAAAGAACCACGTGAGTGATGGGTGCCAGGTTATATAAAGGGACYTCAGGACGATGACTGGATGAAAGAATACGTCAACTGAAATCTCAAATTTCACACATTGGTTATTGATGTGTTCGCTTGGGGCTTCTAGGTTAGACCAAATTTCATCTAGGTGCCCAATGATTAGAAATTCAAAAAAAATTCTGGTGCTCAATTTATTTGCTCAACTAGAAAGTTATAAAGTTGAAAAGGTCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8440</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>197270</contig_pos>
        <strand>+</strand>
        <context>AAAGGGACYT[C/T]AGGACGATGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGAAAAAGAACCACGTGAGTGATGGGTGCCAGGTTATATAAAGGGACCT</left_flank>
        <right_flank>AGGACGATGACTGGATGAAAGAATACGTCAACTGAAATCTCAAATTTCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAATTTCACGAATTTTGAAATTTAAAAAAAAATGTAATTTTGATATTTCTAGAACATCAGATTTTATGAGGTTCGAAAAAAATTCTCTAGGATTCTATTACAAAACAATTTGGAATTTTGAAGAACTCCGGAATAGACGATGATGTTTCCTTCAGGTTATTGTAACCTCAGCATTTCTAAACTTAGCCTCAGAACCTCGAAATTCTTTGAACTCGAAGGAATCTTTAGTCTCACCTCAAAACCTCAAAACCACGAAAACGTATACTCATTCAAAACGATTGACCCTATTTTTCATTCTCTCTTCTTCCCAGGAACCAGTTATTATTACACTTTTTCTAAAAACTCTTTGACGGAAAAAAAAGAGAAGCCCGCGGAGAAAAATTCTGACCAAACGTTTCAACAGAAAAAGAACCACGTGAGTGATGGGTGCCAGGTTATATAAAGGGACCTCAGGACGATGACTGGATGAAAGAATACGTCAACTGAAATCTCAAATTTCACACATTGGTTATTGATGTGTTCGCTTGGGGCTTCTAGGTTAGACCAAATTTCATCTAGGTGCCCAATGATTAGAAATTCAAAAAAAATTCTGGTGCTCAATTTATTTGCTCAACTAGAAAGTTATAAAGTTGAAAAGGTCAGGAATACAAAAAAAAAAAGAAAAAGAAGAAGAACCCAAAGTTTGCGGGAAAGTGGGCGTGGCCTATTTCCCTTCACTTGTATGGACGGGATACAAAGGATTACAATGGGGTTAAAATTGAGTAAGCTGAAAAAGGGAAGGAGTTGAAAATGGGCAGATAATCCAAAAAGACAGACAGAGAAAGAAAAAAAAAGAAAACAGAGCAAAATGATTGATTGTACTTGAATAGAACGAGAAAAAGAAGAAGCTACAGAAAGTAAGAAAAAAAGAAGTATGACAAAAAATGAGAGTTCGTCAAAGTTAATCTTCTT</canonical>
            <polymorphic>TGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAATTTCACGAATTTTGAAATTTAAAAAAAAATGTAATTTTGATATTTCTAGAACATCAGATTTTATGAGGTTCGAAAAAAATTCTCTAGGATTCTATTACAAAACAATTTGGAATTTTGAAGAACTCCGGAATAGACGATGATGTTTCCTTCAGGTTATTGTAACCTCAGCATTTCTAAACTTAGCCTCAGAACCTCGAAATTCTTTGAACTCGAAGGAATCTTTAGTCTCACCTCAAAACCTCAAAACCACGAAAACGTATACTCATTCAAAACGATTGACCCTATTTTTCATTCTCTCTTCTTCCCAGGAACCAGTTATTATTACACTTTTTCTAAAAACTCTTTGACGGAAAAAAAAGAGAAGCCCGCGGAGAAAAATTCTGACCAAACGTTTCAACAGAAAAAGAACCACGTGAGTGATGGGTGCCAGGTTATATAAAGGGACCTYAGGACGATGACTGGATGAAAGAATACGTCAACTGAAATCTCAAATTTCACACATTGGTTATTGATGTGTTCGCTTGGGGCTTCTAGGTTAGACCAAATTTCATCTAGGTGCCCAATGATTAGAAATTCAAAAAAAATTCTGGTGCTCAATTTATTTGCTCAACTAGAAAGTTATAAAGTTGAAAAGGTCAGGAATACAAAAAAAAAAAGAAAAAGAAGAAGAACCCAAAGTTTGCGGGAAAGTGGGCGTGGCCTATTTCCCTTCACTTGTATGGACGGGATACAAAGGATTACAATGGGGTTAAAATTGAGTAAGCTGAAAAAGGGAAGGAGTTGAAAATGGGCAGATAATCCAAAAAGACAGACAGAGAAAGAAAAAAAAAGAAAACAGAGCAAAATGATTGATTGTACTTGAATAGAACGAGAAAAAGAAGAAGCTACAGAAAGTAAGAAAAAAAGAAGTATGACAAAAAATGAGAGTTCGTCAAAGTTAATCTTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>323 311 189 79 56 42</canonical_bands>
                <polymorphic_bands>512 311 79 56 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTCAACAGAAAAAGAACCAC</pcr_primer_p1>
		<pcr_primer_p2>CCTGACCTTTTCAACTTTATAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTCAACAGAAAAAGAACCACGTGAGTGATGGGTGCCAGGTTATATAAAGGGACCTCAGGACGATGACTGGATGAAAGAATACGTCAACTGAAATCTCAAATTTCACACATTGGTTATTGATGTGTTCGCTTGGGGCTTCTAGGTTAGACCAAATTTCATCTAGGTGCCCAATGATTAGAAATTCAAAAAAAATTCTGGTGCTCAATTTATTTGCTCAACTAGAAAGTTATAAAGTTGAAAAGGTCAGG</canonical_amplicon>
		<polymorphic_amplicon>GTTTCAACAGAAAAAGAACCACGTGAGTGATGGGTGCCAGGTTATATAAAGGGACCTYAGGACGATGACTGGATGAAAGAATACGTCAACTGAAATCTCAAATTTCACACATTGGTTATTGATGTGTTCGCTTGGGGCTTCTAGGTTAGACCAAATTTCATCTAGGTGCCCAATGATTAGAAATTCAAAAAAAATTCTGGTGCTCAATTTATTTGCTCAACTAGAAAGTTATAAAGTTGAAAAGGTCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8441</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>197281</contig_pos>
        <strand>+</strand>
        <context>AGGACGATGA[C/G]TGGATGAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCACGTGAGTGATGGGTGCCAGGTTATATAAAGGGACCTCAGGACGATGA</left_flank>
        <right_flank>TGGATGAAAGAATACGTCAACTGAAATCTCAAATTTCACACATTGGTTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAATTTCACGAATTTTGAAATTTAAAAAAAAATGTAATTTTGATATTTCTAGAACATCAGATTTTATGAGGTTCGAAAAAAATTCTCTAGGATTCTATTACAAAACAATTTGGAATTTTGAAGAACTCCGGAATAGACGATGATGTTTCCTTCAGGTTATTGTAACCTCAGCATTTCTAAACTTAGCCTCAGAACCTCGAAATTCTTTGAACTCGAAGGAATCTTTAGTCTCACCTCAAAACCTCAAAACCACGAAAACGTATACTCATTCAAAACGATTGACCCTATTTTTCATTCTCTCTTCTTCCCAGGAACCAGTTATTATTACACTTTTTCTAAAAACTCTTTGACGGAAAAAAAAGAGAAGCCCGCGGAGAAAAATTCTGACCAAACGTTTCAACAGAAAAAGAACCACGTGAGTGATGGGTGCCAGGTTATATAAAGGGACCTCAGGACGATGACTGGATGAAAGAATACGTCAACTGAAATCTCAAATTTCACACATTGGTTATTGATGTGTTCGCTTGGGGCTTCTAGGTTAGACCAAATTTCATCTAGGTGCCCAATGATTAGAAATTCAAAAAAAATTCTGGTGCTCAATTTATTTGCTCAACTAGAAAGTTATAAAGTTGAAAAGGTCAGGAATACAAAAAAAAAAAGAAAAAGAAGAAGAACCCAAAGTTTGCGGGAAAGTGGGCGTGGCCTATTTCCCTTCACTTGTATGGACGGGATACAAAGGATTACAATGGGGTTAAAATTGAGTAAGCTGAAAAAGGGAAGGAGTTGAAAATGGGCAGATAATCCAAAAAGACAGACAGAGAAAGAAAAAAAAAGAAAACAGAGCAAAATGATTGATTGTACTTGAATAGAACGAGAAAAAGAAGAAGCTACAGAAAGTAAGAAAAAAAGAAGTATGACAAAAAATGAGAGTTCGTCAAAGTTAATCTTCTTCTTCGAGATTC</canonical>
            <polymorphic>GATTTTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAATTTCACGAATTTTGAAATTTAAAAAAAAATGTAATTTTGATATTTCTAGAACATCAGATTTTATGAGGTTCGAAAAAAATTCTCTAGGATTCTATTACAAAACAATTTGGAATTTTGAAGAACTCCGGAATAGACGATGATGTTTCCTTCAGGTTATTGTAACCTCAGCATTTCTAAACTTAGCCTCAGAACCTCGAAATTCTTTGAACTCGAAGGAATCTTTAGTCTCACCTCAAAACCTCAAAACCACGAAAACGTATACTCATTCAAAACGATTGACCCTATTTTTCATTCTCTCTTCTTCCCAGGAACCAGTTATTATTACACTTTTTCTAAAAACTCTTTGACGGAAAAAAAAGAGAAGCCCGCGGAGAAAAATTCTGACCAAACGTTTCAACAGAAAAAGAACCACGTGAGTGATGGGTGCCAGGTTATATAAAGGGACCTCAGGACGATGASTGGATGAAAGAATACGTCAACTGAAATCTCAAATTTCACACATTGGTTATTGATGTGTTCGCTTGGGGCTTCTAGGTTAGACCAAATTTCATCTAGGTGCCCAATGATTAGAAATTCAAAAAAAATTCTGGTGCTCAATTTATTTGCTCAACTAGAAAGTTATAAAGTTGAAAAGGTCAGGAATACAAAAAAAAAAAGAAAAAGAAGAAGAACCCAAAGTTTGCGGGAAAGTGGGCGTGGCCTATTTCCCTTCACTTGTATGGACGGGATACAAAGGATTACAATGGGGTTAAAATTGAGTAAGCTGAAAAAGGGAAGGAGTTGAAAATGGGCAGATAATCCAAAAAGACAGACAGAGAAAGAAAAAAAAAGAAAACAGAGCAAAATGATTGATTGTACTTGAATAGAACGAGAAAAAGAAGAAGCTACAGAAAGTAAGAAAAAAAGAAGTATGACAAAAAATGAGAGTTCGTCAAAGTTAATCTTCTTCTTCGAGATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTCAACAGAAAAAGAACCAC</pcr_primer_p1>
		<pcr_primer_p2>CCTGACCTTTTCAACTTTATAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTCAACAGAAAAAGAACCACGTGAGTGATGGGTGCCAGGTTATATAAAGGGACCTCAGGACGATGACTGGATGAAAGAATACGTCAACTGAAATCTCAAATTTCACACATTGGTTATTGATGTGTTCGCTTGGGGCTTCTAGGTTAGACCAAATTTCATCTAGGTGCCCAATGATTAGAAATTCAAAAAAAATTCTGGTGCTCAATTTATTTGCTCAACTAGAAAGTTATAAAGTTGAAAAGGTCAGG</canonical_amplicon>
		<polymorphic_amplicon>GTTTCAACAGAAAAAGAACCACGTGAGTGATGGGTGCCAGGTTATATAAAGGGACCTCAGGACGATGASTGGATGAAAGAATACGTCAACTGAAATCTCAAATTTCACACATTGGTTATTGATGTGTTCGCTTGGGGCTTCTAGGTTAGACCAAATTTCATCTAGGTGCCCAATGATTAGAAATTCAAAAAAAATTCTGGTGCTCAATTTATTTGCTCAACTAGAAAGTTATAAAGTTGAAAAGGTCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8442</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>197317</contig_pos>
        <strand>+</strand>
        <context>ATCTCAAATT[C/T]CACACATTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTCAGGACGATGACTGGATGAAAGAATACGTCAACTGAAATCTCAAATT</left_flank>
        <right_flank>CACACATTGGTTATTGATGTGTTCGCTTGGGGCTTCTAGGTTAGACCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAATTTCACGAATTTTGAAATTTAAAAAAAAATGTAATTTTGATATTTCTAGAACATCAGATTTTATGAGGTTCGAAAAAAATTCTCTAGGATTCTATTACAAAACAATTTGGAATTTTGAAGAACTCCGGAATAGACGATGATGTTTCCTTCAGGTTATTGTAACCTCAGCATTTCTAAACTTAGCCTCAGAACCTCGAAATTCTTTGAACTCGAAGGAATCTTTAGTCTCACCTCAAAACCTCAAAACCACGAAAACGTATACTCATTCAAAACGATTGACCCTATTTTTCATTCTCTCTTCTTCCCAGGAACCAGTTATTATTACACTTTTTCTAAAAACTCTTTGACGGAAAAAAAAGAGAAGCCCGCGGAGAAAAATTCTGACCAAACGTTTCAACAGAAAAAGAACCACGTGAGTGATGGGTGCCAGGTTATATAAAGGGACCTCAGGACGATGACTGGATGAAAGAATACGTCAACTGAAATCTCAAATTTCACACATTGGTTATTGATGTGTTCGCTTGGGGCTTCTAGGTTAGACCAAATTTCATCTAGGTGCCCAATGATTAGAAATTCAAAAAAAATTCTGGTGCTCAATTTATTTGCTCAACTAGAAAGTTATAAAGTTGAAAAGGTCAGGAATACAAAAAAAAAAAGAAAAAGAAGAAGAACCCAAAGTTTGCGGGAAAGTGGGCGTGGCCTATTTCCCTTCACTTGTATGGACGGGATACAAAGGATTACAATGGGGTTAAAATTGAGTAAGCTGAAAAAGGGAAGGAGTTGAAAATGGGCAGATAATCCAAAAAGACAGACAGAGAAAGAAAAAAAAAGAAAACAGAGCAAAATGATTGATTGTACTTGAATAGAACGAGAAAAAGAAGAAGCTACAGAAAGTAAGAAAAAAAGAAGTATGACAAAAAATGAGAGTTCGTCAAAGTTAATCTTCTTCTTCGAGATTCTTCTTTGCTTTTCGACTACGACGTTTTCGTGTTTTC</canonical>
            <polymorphic>CTGAATTTCACGAATTTTGAAATTTAAAAAAAAATGTAATTTTGATATTTCTAGAACATCAGATTTTATGAGGTTCGAAAAAAATTCTCTAGGATTCTATTACAAAACAATTTGGAATTTTGAAGAACTCCGGAATAGACGATGATGTTTCCTTCAGGTTATTGTAACCTCAGCATTTCTAAACTTAGCCTCAGAACCTCGAAATTCTTTGAACTCGAAGGAATCTTTAGTCTCACCTCAAAACCTCAAAACCACGAAAACGTATACTCATTCAAAACGATTGACCCTATTTTTCATTCTCTCTTCTTCCCAGGAACCAGTTATTATTACACTTTTTCTAAAAACTCTTTGACGGAAAAAAAAGAGAAGCCCGCGGAGAAAAATTCTGACCAAACGTTTCAACAGAAAAAGAACCACGTGAGTGATGGGTGCCAGGTTATATAAAGGGACCTCAGGACGATGACTGGATGAAAGAATACGTCAACTGAAATCTCAAATTYCACACATTGGTTATTGATGTGTTCGCTTGGGGCTTCTAGGTTAGACCAAATTTCATCTAGGTGCCCAATGATTAGAAATTCAAAAAAAATTCTGGTGCTCAATTTATTTGCTCAACTAGAAAGTTATAAAGTTGAAAAGGTCAGGAATACAAAAAAAAAAAGAAAAAGAAGAAGAACCCAAAGTTTGCGGGAAAGTGGGCGTGGCCTATTTCCCTTCACTTGTATGGACGGGATACAAAGGATTACAATGGGGTTAAAATTGAGTAAGCTGAAAAAGGGAAGGAGTTGAAAATGGGCAGATAATCCAAAAAGACAGACAGAGAAAGAAAAAAAAAGAAAACAGAGCAAAATGATTGATTGTACTTGAATAGAACGAGAAAAAGAAGAAGCTACAGAAAGTAAGAAAAAAAGAAGTATGACAAAAAATGAGAGTTCGTCAAAGTTAATCTTCTTCTTCGAGATTCTTCTTTGCTTTTCGACTACGACGTTTTCGTGTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>413 179 114 87 62 53 33 28 11 9 8 3</canonical_bands>
                <polymorphic_bands>413 179 167 87 62 33 28 11 9 8 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTCAACAGAAAAAGAACCAC</pcr_primer_p1>
		<pcr_primer_p2>CCTGACCTTTTCAACTTTATAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTCAACAGAAAAAGAACCACGTGAGTGATGGGTGCCAGGTTATATAAAGGGACCTCAGGACGATGACTGGATGAAAGAATACGTCAACTGAAATCTCAAATTTCACACATTGGTTATTGATGTGTTCGCTTGGGGCTTCTAGGTTAGACCAAATTTCATCTAGGTGCCCAATGATTAGAAATTCAAAAAAAATTCTGGTGCTCAATTTATTTGCTCAACTAGAAAGTTATAAAGTTGAAAAGGTCAGG</canonical_amplicon>
		<polymorphic_amplicon>GTTTCAACAGAAAAAGAACCACGTGAGTGATGGGTGCCAGGTTATATAAAGGGACCTCAGGACGATGACTGGATGAAAGAATACGTCAACTGAAATCTCAAATTYCACACATTGGTTATTGATGTGTTCGCTTGGGGCTTCTAGGTTAGACCAAATTTCATCTAGGTGCCCAATGATTAGAAATTCAAAAAAAATTCTGGTGCTCAATTTATTTGCTCAACTAGAAAGTTATAAAGTTGAAAAGGTCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8443</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>197464</contig_pos>
        <strand>+</strand>
        <context>AAGGTCAGGA[A/G]TACRAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTCAATTTATTTGCTCAACTAGAAAGTTATAAAGTTGAAAAGGTCAGGA</left_flank>
        <right_flank>TACAAAAAAAAAAAGAAAAAGAAGAAGAACCCAAAGTTTGCGGGAAAGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCTTCAGGTTATTGTAACCTCAGCATTTCTAAACTTAGCCTCAGAACCTCGAAATTCTTTGAACTCGAAGGAATCTTTAGTCTCACCTCAAAACCTCAAAACCACGAAAACGTATACTCATTCAAAACGATTGACCCTATTTTTCATTCTCTCTTCTTCCCAGGAACCAGTTATTATTACACTTTTTCTAAAAACTCTTTGACGGAAAAAAAAGAGAAGCCCGCGGAGAAAAATTCTGACCAAACGTTTCAACAGAAAAAGAACCACGTGAGTGATGGGTGCCAGGTTATATAAAGGGACCTCAGGACGATGACTGGATGAAAGAATACGTCAACTGAAATCTCAAATTTCACACATTGGTTATTGATGTGTTCGCTTGGGGCTTCTAGGTTAGACCAAATTTCATCTAGGTGCCCAATGATTAGAAATTCAAAAAAAATTCTGGTGCTCAATTTATTTGCTCAACTAGAAAGTTATAAAGTTGAAAAGGTCAGGAATACAAAAAAAAAAAGAAAAAGAAGAAGAACCCAAAGTTTGCGGGAAAGTGGGCGTGGCCTATTTCCCTTCACTTGTATGGACGGGATACAAAGGATTACAATGGGGTTAAAATTGAGTAAGCTGAAAAAGGGAAGGAGTTGAAAATGGGCAGATAATCCAAAAAGACAGACAGAGAAAGAAAAAAAAAGAAAACAGAGCAAAATGATTGATTGTACTTGAATAGAACGAGAAAAAGAAGAAGCTACAGAAAGTAAGAAAAAAAGAAGTATGACAAAAAATGAGAGTTCGTCAAAGTTAATCTTCTTCTTCGAGATTCTTCTTTGCTTTTCGACTACGACGTTTTCGTGTTTTCGGCGCTGTGTTGCAGAGTTCCAGGGGTCTTTTGACTTTGTTCAGACGGAAGTACAAGTTACAGGCAATGAAAAAATATGTTTTCCTGGACCATCACTATATGTATTCTCTTATAGGATCCCAATAGAAGTCATTTCAATTTGAGGTC</canonical>
            <polymorphic>TTTCCTTCAGGTTATTGTAACCTCAGCATTTCTAAACTTAGCCTCAGAACCTCGAAATTCTTTGAACTCGAAGGAATCTTTAGTCTCACCTCAAAACCTCAAAACCACGAAAACGTATACTCATTCAAAACGATTGACCCTATTTTTCATTCTCTCTTCTTCCCAGGAACCAGTTATTATTACACTTTTTCTAAAAACTCTTTGACGGAAAAAAAAGAGAAGCCCGCGGAGAAAAATTCTGACCAAACGTTTCAACAGAAAAAGAACCACGTGAGTGATGGGTGCCAGGTTATATAAAGGGACCTCAGGACGATGACTGGATGAAAGAATACGTCAACTGAAATCTCAAATTTCACACATTGGTTATTGATGTGTTCGCTTGGGGCTTCTAGGTTAGACCAAATTTCATCTAGGTGCCCAATGATTAGAAATTCAAAAAAAATTCTGGTGCTCAATTTATTTGCTCAACTAGAAAGTTATAAAGTTGAAAAGGTCAGGARTACAAAAAAAAAAAGAAAAAGAAGAAGAACCCAAAGTTTGCGGGAAAGTGGGCGTGGCCTATTTCCCTTCACTTGTATGGACGGGATACAAAGGATTACAATGGGGTTAAAATTGAGTAAGCTGAAAAAGGGAAGGAGTTGAAAATGGGCAGATAATCCAAAAAGACAGACAGAGAAAGAAAAAAAAAGAAAACAGAGCAAAATGATTGATTGTACTTGAATAGAACGAGAAAAAGAAGAAGCTACAGAAAGTAAGAAAAAAAGAAGTATGACAAAAAATGAGAGTTCGTCAAAGTTAATCTTCTTCTTCGAGATTCTTCTTTGCTTTTCGACTACGACGTTTTCGTGTTTTCGGCGCTGTGTTGCAGAGTTCCAGGGGTCTTTTGACTTTGTTCAGACGGAAGTACAAGTTACAGGCAATGAAAAAATATGTTTTCCTGGACCATCACTATATGTATTCTCTTATAGGATCCCAATAGAAGTCATTTCAATTTGAGGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATACGTCAACTGAAATCTCAAA</pcr_primer_p1>
		<pcr_primer_p2>CATACAAGTGAAGGGAAATAGG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AATACGTCAACTGAAATCTCAAATTTCACACATTGGTTATTGATGTGTTCGCTTGGGGCTTCTAGGTTAGACCAAATTTCATCTAGGTGCCCAATGATTAGAAATTCAAAAAAAATTCTGGTGCTCAATTTATTTGCTCAACTAGAAAGTTATAAAGTTGAAAAGGTCAGGAATACAAAAAAAAAAAGAAAAAGAAGAAGAACCCAAAGTTTGCGGGAAAGTGGGCGTGGCCTATTTCCCTTCACTTGTATG</canonical_amplicon>
		<polymorphic_amplicon>AATACGTCAACTGAAATCTCAAATTTCACACATTGGTTATTGATGTGTTCGCTTGGGGCTTCTAGGTTAGACCAAATTTCATCTAGGTGCCCAATGATTAGAAATTCAAAAAAAATTCTGGTGCTCAATTTATTTGCTCAACTAGAAAGTTATAAAGTTGAAAAGGTCAGGARTACAAAAAAAAAAAGAAAAAGAAGAAGAACCCAAAGTTTGCGGGAAAGTGGGCGTGGCCTATTTCCCTTCACTTGTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8445</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>197611</contig_pos>
        <strand>+</strand>
        <context>AGTTGAAAAT[A/G]GGCAGATAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACAATGGGGTTAAAATTGAGTAAGCTGAAAAAGGGAAGGAGTTGAAAAT</left_flank>
        <right_flank>GGCAGATAATCCAAAAAGACAGACAGAGAAAGAAAAAAAAAGAAAACAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTCTCTCTTCTTCCCAGGAACCAGTTATTATTACACTTTTTCTAAAAACTCTTTGACGGAAAAAAAAGAGAAGCCCGCGGAGAAAAATTCTGACCAAACGTTTCAACAGAAAAAGAACCACGTGAGTGATGGGTGCCAGGTTATATAAAGGGACCTCAGGACGATGACTGGATGAAAGAATACGTCAACTGAAATCTCAAATTTCACACATTGGTTATTGATGTGTTCGCTTGGGGCTTCTAGGTTAGACCAAATTTCATCTAGGTGCCCAATGATTAGAAATTCAAAAAAAATTCTGGTGCTCAATTTATTTGCTCAACTAGAAAGTTATAAAGTTGAAAAGGTCAGGAATACAAAAAAAAAAAGAAAAAGAAGAAGAACCCAAAGTTTGCGGGAAAGTGGGCGTGGCCTATTTCCCTTCACTTGTATGGACGGGATACAAAGGATTACAATGGGGTTAAAATTGAGTAAGCTGAAAAAGGGAAGGAGTTGAAAATGGGCAGATAATCCAAAAAGACAGACAGAGAAAGAAAAAAAAAGAAAACAGAGCAAAATGATTGATTGTACTTGAATAGAACGAGAAAAAGAAGAAGCTACAGAAAGTAAGAAAAAAAGAAGTATGACAAAAAATGAGAGTTCGTCAAAGTTAATCTTCTTCTTCGAGATTCTTCTTTGCTTTTCGACTACGACGTTTTCGTGTTTTCGGCGCTGTGTTGCAGAGTTCCAGGGGTCTTTTGACTTTGTTCAGACGGAAGTACAAGTTACAGGCAATGAAAAAATATGTTTTCCTGGACCATCACTATATGTATTCTCTTATAGGATCCCAATAGAAGTCATTTCAATTTGAGGTCAATTATCTCAATTCCTATAGGTATCAAAAAAGCAAGGTATCAAAAATGTGTCAACTGATAAAATTTTTGTGATATAATCATGAAAAATTTATCAGTTGACAAGTATTTCATATCTTTGACAGGAGCCAAGATAAATTAGATCAAAGT</canonical>
            <polymorphic>CATTCTCTCTTCTTCCCAGGAACCAGTTATTATTACACTTTTTCTAAAAACTCTTTGACGGAAAAAAAAGAGAAGCCCGCGGAGAAAAATTCTGACCAAACGTTTCAACAGAAAAAGAACCACGTGAGTGATGGGTGCCAGGTTATATAAAGGGACCTCAGGACGATGACTGGATGAAAGAATACGTCAACTGAAATCTCAAATTTCACACATTGGTTATTGATGTGTTCGCTTGGGGCTTCTAGGTTAGACCAAATTTCATCTAGGTGCCCAATGATTAGAAATTCAAAAAAAATTCTGGTGCTCAATTTATTTGCTCAACTAGAAAGTTATAAAGTTGAAAAGGTCAGGAATACAAAAAAAAAAAGAAAAAGAAGAAGAACCCAAAGTTTGCGGGAAAGTGGGCGTGGCCTATTTCCCTTCACTTGTATGGACGGGATACAAAGGATTACAATGGGGTTAAAATTGAGTAAGCTGAAAAAGGGAAGGAGTTGAAAATRGGCAGATAATCCAAAAAGACAGACAGAGAAAGAAAAAAAAAGAAAACAGAGCAAAATGATTGATTGTACTTGAATAGAACGAGAAAAAGAAGAAGCTACAGAAAGTAAGAAAAAAAGAAGTATGACAAAAAATGAGAGTTCGTCAAAGTTAATCTTCTTCTTCGAGATTCTTCTTTGCTTTTCGACTACGACGTTTTCGTGTTTTCGGCGCTGTGTTGCAGAGTTCCAGGGGTCTTTTGACTTTGTTCAGACGGAAGTACAAGTTACAGGCAATGAAAAAATATGTTTTCCTGGACCATCACTATATGTATTCTCTTATAGGATCCCAATAGAAGTCATTTCAATTTGAGGTCAATTATCTCAATTCCTATAGGTATCAAAAAAGCAAGGTATCAAAAATGTGTCAACTGATAAAATTTTTGTGATATAATCATGAAAAATTTATCAGTTGACAAGTATTTCATATCTTTGACAGGAGCCAAGATAAATTAGATCAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTATTTCCCTTCACTTGTATG</pcr_primer_p1>
		<pcr_primer_p2>GAAGAAGATTAACTTTGACGAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTATTTCCCTTCACTTGTATGGACGGGATACAAAGGATTACAATGGGGTTAAAATTGAGTAAGCTGAAAAAGGGAAGGAGTTGAAAATGGGCAGATAATCCAAAAAGACAGACAGAGAAAGAAAAAAAAAGAAAACAGAGCAAAATGATTGATTGTACTTGAATAGAACGAGAAAAAGAAGAAGCTACAGAAAGTAAGAAAAAAAGAAGTATGACAAAAAATGAGAGTTCGTCAAAGTTAATCTTCTTC</canonical_amplicon>
		<polymorphic_amplicon>CCTATTTCCCTTCACTTGTATGGACGGGATACAAAGGATTACAATGGGGTTAAAATTGAGTAAGCTGAAAAAGGGAAGGAGTTGAAAATRGGCAGATAATCCAAAAAGACAGACAGAGAAAGAAAAAAAAAGAAAACAGAGCAAAATGATTGATTGTACTTGAATAGAACGAGAAAAAGAAGAAGCTACAGAAAGTAAGAAAAAAAGAAGTATGACAAAAAATGAGAGTTCGTCAAAGTTAATCTTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8446</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>200473</contig_pos>
        <strand>+</strand>
        <context>WGRAAATATK[A/G]AGAACAATGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATT</left_flank>
        <right_flank>AGAACAATGGAAATAAGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAGTGTTTTGTTAGTTGACACATTTTTGATATCTCTTCTAGAAACCGACATAAACAGGCTCAAAATTGACAGTGTGAGGGCTCTTCTATTACAGGTTTTATGGTGTCCCCAAAATGAAACATCTCCCCACTTAACTACCCACGCATTTTGAGTCCGAGCACTGAACCAGGTAGCCACATCTAATTCGCTTTCTTTTCATCAAGCCTTAACTTGAAATTCTATTCATTCGATTCCAAAATTGACGTGCTGCAACAAAGCTCTCTCTCTTTTTTTGGTCACAAGTCAGTAGAGTCATTTGCGTTGGTCTCTTCACTTCAATCATCACTCCCTTTGGGACCCATTTTCTGCTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAAGCCAAAAAAGACTCACTTGCACTCCAGATCCCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACAATGGAAATAAGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTGGAGGGAGTCTAGAAATGTGGAACTTTTGGAATTTCAGATGATGGACCCTTCTAGTGGAAAATGGCTAACTATAGATGAGGACTTAATATTTGTCCCTTCGGTCAGAAAGTTTCAGAATTCATAAATAAACTGAACAGGATGGCGCAAAATTACAGGTAAGAACGGGTATATCTTTGAACATAAGTATCTTGGAAGCACGAAAATTGGTAGAGATATAATTTTACGTTTGATTTTAAGCTATTGAAATTTTCAAGCCGATTCCTTAAGTGTAGGTATTGCTATGATTTTTTAGAGATGAACGGCGTTAGGTTTTTCATAAGATGAAGCAATGACAAACGATAACACAGCTCAATGTTGATCAAACANNNNNNNNNNAGGTAAACACGTGAAAAACCACTGTCGGTCACTTGAAAAAATGGCTATCAGGCTCCGTGGCCTAGGTTTC</canonical>
            <polymorphic>AGAAGTGTTTTGTTAGTTGACACATTTTTGATATCTCTTCTAGAAACCGACATAAACAGGCTCAAAATTGACAGTGTGAGGGCTCTTCTATTACAGGTTTTATGGTGTCCCCAAAATGAAACATCTCCCCACTTAACTACCCACGCATTTTGAGTCCGAGCACTGAACCAGGTAGCCACATCTAATTCGCTTTCTTTTCATCAAGCCTTAACTTGAAATTCTATTCATTCGATTCCAAAATTGACGTGCTGCAACAAAGCTCTCTCTCTTTTTTTGGTCACAAGTCAGTAGAGTCATTTGCGTTGGTCTCTTCACTTCAATCATCACTCCCTTTGGGACCCATTTTCTGCTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAAGCCAAAAAAGACTCACTTGCACTCCAGATCCCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTRAGAACAATGGAAATAAGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTGGAGGGAGTCTAGAAATGTGGAACTTTTGGAATTTCAGATGATGGACCCTTCTAGTGGAAAATGGCTAACTATAGATGAGGACTTAATATTTGTCCCTTCGGTCAGAAAGTTTCAGAATTCATAAATAAACTGAACAGGATGGCGCAAAATTACAGGTAAGAACGGGTATATCTTTGAACATAAGTATCTTGGAAGCACGAAAATTGGTAGAGATATAATTTTACGTTTGATTTTAAGCTATTGAAATTTTCAAGCCGATTCCTTAAGTGTAGGTATTGCTATGATTTTTTAGAGATGAACGGCGTTAGGTTTTTCATAAGATGAAGCAATGACAAACGATAACACAGCTCAATGTTGATCAAACANNNNNNNNNNAGGTAAACACGTGAAAAACCACTGTCGGTCACTTGAAAAAATGGCTATCAGGCTCCGTGGCCTAGGTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTCACTTGCACTCCAGAT</pcr_primer_p1>
		<pcr_primer_p2>GGGACAAATATTAAGTCCTCATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACTCACTTGCACTCCAGATCCCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACAATGGAAATAAGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTGGAGGGAGTCTAGAAATGTGGAACTTTTGGAATTTCAGATGATGGACCCTTCTAGTGGAAAATGGCTAACTATAGATGAGGACTTAATATTTGTCCC</canonical_amplicon>
		<polymorphic_amplicon>GACTCACTTGCACTCCAGATCCCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTRAGAACAATGGAAATAAGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTGGAGGGAGTCTAGAAATGTGGAACTTTTGGAATTTCAGATGATGGACCCTTCTAGTGGAAAATGGCTAACTATAGATGAGGACTTAATATTTGTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8447</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>200472</contig_pos>
        <strand>+</strand>
        <context>CWGRAAATAT[G/T]RAGAACAATG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATAT</left_flank>
        <right_flank>GAGAACAATGGAAATAAGCACTTTTAGTTCGTAAATTTTAAAGGGCACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAAGTGTTTTGTTAGTTGACACATTTTTGATATCTCTTCTAGAAACCGACATAAACAGGCTCAAAATTGACAGTGTGAGGGCTCTTCTATTACAGGTTTTATGGTGTCCCCAAAATGAAACATCTCCCCACTTAACTACCCACGCATTTTGAGTCCGAGCACTGAACCAGGTAGCCACATCTAATTCGCTTTCTTTTCATCAAGCCTTAACTTGAAATTCTATTCATTCGATTCCAAAATTGACGTGCTGCAACAAAGCTCTCTCTCTTTTTTTGGTCACAAGTCAGTAGAGTCATTTGCGTTGGTCTCTTCACTTCAATCATCACTCCCTTTGGGACCCATTTTCTGCTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAAGCCAAAAAAGACTCACTTGCACTCCAGATCCCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACAATGGAAATAAGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTGGAGGGAGTCTAGAAATGTGGAACTTTTGGAATTTCAGATGATGGACCCTTCTAGTGGAAAATGGCTAACTATAGATGAGGACTTAATATTTGTCCCTTCGGTCAGAAAGTTTCAGAATTCATAAATAAACTGAACAGGATGGCGCAAAATTACAGGTAAGAACGGGTATATCTTTGAACATAAGTATCTTGGAAGCACGAAAATTGGTAGAGATATAATTTTACGTTTGATTTTAAGCTATTGAAATTTTCAAGCCGATTCCTTAAGTGTAGGTATTGCTATGATTTTTTAGAGATGAACGGCGTTAGGTTTTTCATAAGATGAAGCAATGACAAACGATAACACAGCTCAATGTTGATCAAACANNNNNNNNNNAGGTAAACACGTGAAAAACCACTGTCGGTCACTTGAAAAAATGGCTATCAGGCTCCGTGGCCTAGGTTT</canonical>
            <polymorphic>CAGAAGTGTTTTGTTAGTTGACACATTTTTGATATCTCTTCTAGAAACCGACATAAACAGGCTCAAAATTGACAGTGTGAGGGCTCTTCTATTACAGGTTTTATGGTGTCCCCAAAATGAAACATCTCCCCACTTAACTACCCACGCATTTTGAGTCCGAGCACTGAACCAGGTAGCCACATCTAATTCGCTTTCTTTTCATCAAGCCTTAACTTGAAATTCTATTCATTCGATTCCAAAATTGACGTGCTGCAACAAAGCTCTCTCTCTTTTTTTGGTCACAAGTCAGTAGAGTCATTTGCGTTGGTCTCTTCACTTCAATCATCACTCCCTTTGGGACCCATTTTCTGCTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAAGCCAAAAAAGACTCACTTGCACTCCAGATCCCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATKGAGAACAATGGAAATAAGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTGGAGGGAGTCTAGAAATGTGGAACTTTTGGAATTTCAGATGATGGACCCTTCTAGTGGAAAATGGCTAACTATAGATGAGGACTTAATATTTGTCCCTTCGGTCAGAAAGTTTCAGAATTCATAAATAAACTGAACAGGATGGCGCAAAATTACAGGTAAGAACGGGTATATCTTTGAACATAAGTATCTTGGAAGCACGAAAATTGGTAGAGATATAATTTTACGTTTGATTTTAAGCTATTGAAATTTTCAAGCCGATTCCTTAAGTGTAGGTATTGCTATGATTTTTTAGAGATGAACGGCGTTAGGTTTTTCATAAGATGAAGCAATGACAAACGATAACACAGCTCAATGTTGATCAAACANNNNNNNNNNAGGTAAACACGTGAAAAACCACTGTCGGTCACTTGAAAAAATGGCTATCAGGCTCCGTGGCCTAGGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>497 357 146</canonical_bands>
                <polymorphic_bands>643 357</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTCACTTGCACTCCAGAT</pcr_primer_p1>
		<pcr_primer_p2>GGGACAAATATTAAGTCCTCATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACTCACTTGCACTCCAGATCCCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACAATGGAAATAAGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTGGAGGGAGTCTAGAAATGTGGAACTTTTGGAATTTCAGATGATGGACCCTTCTAGTGGAAAATGGCTAACTATAGATGAGGACTTAATATTTGTCCC</canonical_amplicon>
		<polymorphic_amplicon>GACTCACTTGCACTCCAGATCCCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATKGAGAACAATGGAAATAAGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTGGAGGGAGTCTAGAAATGTGGAACTTTTGGAATTTCAGATGATGGACCCTTCTAGTGGAAAATGGCTAACTATAGATGAGGACTTAATATTTGTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8448</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>200465</contig_pos>
        <strand>+</strand>
        <context>GGGAAATCWG[A/G]AAATATKRAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTG</left_flank>
        <right_flank>AAATATTGAGAACAATGGAAATAAGCACTTTTAGTTCGTAAATTTTAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAATATCAGAAGTGTTTTGTTAGTTGACACATTTTTGATATCTCTTCTAGAAACCGACATAAACAGGCTCAAAATTGACAGTGTGAGGGCTCTTCTATTACAGGTTTTATGGTGTCCCCAAAATGAAACATCTCCCCACTTAACTACCCACGCATTTTGAGTCCGAGCACTGAACCAGGTAGCCACATCTAATTCGCTTTCTTTTCATCAAGCCTTAACTTGAAATTCTATTCATTCGATTCCAAAATTGACGTGCTGCAACAAAGCTCTCTCTCTTTTTTTGGTCACAAGTCAGTAGAGTCATTTGCGTTGGTCTCTTCACTTCAATCATCACTCCCTTTGGGACCCATTTTCTGCTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAAGCCAAAAAAGACTCACTTGCACTCCAGATCCCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACAATGGAAATAAGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTGGAGGGAGTCTAGAAATGTGGAACTTTTGGAATTTCAGATGATGGACCCTTCTAGTGGAAAATGGCTAACTATAGATGAGGACTTAATATTTGTCCCTTCGGTCAGAAAGTTTCAGAATTCATAAATAAACTGAACAGGATGGCGCAAAATTACAGGTAAGAACGGGTATATCTTTGAACATAAGTATCTTGGAAGCACGAAAATTGGTAGAGATATAATTTTACGTTTGATTTTAAGCTATTGAAATTTTCAAGCCGATTCCTTAAGTGTAGGTATTGCTATGATTTTTTAGAGATGAACGGCGTTAGGTTTTTCATAAGATGAAGCAATGACAAACGATAACACAGCTCAATGTTGATCAAACANNNNNNNNNNAGGTAAACACGTGAAAAACCACTGTCGGTCACTTGAAAAAATGGCTATCAGGCTCCGTGGCC</canonical>
            <polymorphic>ATAATATCAGAAGTGTTTTGTTAGTTGACACATTTTTGATATCTCTTCTAGAAACCGACATAAACAGGCTCAAAATTGACAGTGTGAGGGCTCTTCTATTACAGGTTTTATGGTGTCCCCAAAATGAAACATCTCCCCACTTAACTACCCACGCATTTTGAGTCCGAGCACTGAACCAGGTAGCCACATCTAATTCGCTTTCTTTTCATCAAGCCTTAACTTGAAATTCTATTCATTCGATTCCAAAATTGACGTGCTGCAACAAAGCTCTCTCTCTTTTTTTGGTCACAAGTCAGTAGAGTCATTTGCGTTGGTCTCTTCACTTCAATCATCACTCCCTTTGGGACCCATTTTCTGCTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAAGCCAAAAAAGACTCACTTGCACTCCAGATCCCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGRAAATATTGAGAACAATGGAAATAAGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTGGAGGGAGTCTAGAAATGTGGAACTTTTGGAATTTCAGATGATGGACCCTTCTAGTGGAAAATGGCTAACTATAGATGAGGACTTAATATTTGTCCCTTCGGTCAGAAAGTTTCAGAATTCATAAATAAACTGAACAGGATGGCGCAAAATTACAGGTAAGAACGGGTATATCTTTGAACATAAGTATCTTGGAAGCACGAAAATTGGTAGAGATATAATTTTACGTTTGATTTTAAGCTATTGAAATTTTCAAGCCGATTCCTTAAGTGTAGGTATTGCTATGATTTTTTAGAGATGAACGGCGTTAGGTTTTTCATAAGATGAAGCAATGACAAACGATAACACAGCTCAATGTTGATCAAACANNNNNNNNNNAGGTAAACACGTGAAAAACCACTGTCGGTCACTTGAAAAAATGGCTATCAGGCTCCGTGGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>323 220 156 113 101 68 10 9</canonical_bands>
                <polymorphic_bands>323 220 214 156 68 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTCACTTGCACTCCAGAT</pcr_primer_p1>
		<pcr_primer_p2>GGGACAAATATTAAGTCCTCATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACTCACTTGCACTCCAGATCCCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACAATGGAAATAAGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTGGAGGGAGTCTAGAAATGTGGAACTTTTGGAATTTCAGATGATGGACCCTTCTAGTGGAAAATGGCTAACTATAGATGAGGACTTAATATTTGTCCC</canonical_amplicon>
		<polymorphic_amplicon>GACTCACTTGCACTCCAGATCCCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGRAAATATTGAGAACAATGGAAATAAGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTGGAGGGAGTCTAGAAATGTGGAACTTTTGGAATTTCAGATGATGGACCCTTCTAGTGGAAAATGGCTAACTATAGATGAGGACTTAATATTTGTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8449</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>200463</contig_pos>
        <strand>+</strand>
        <context>TCGGGAAATC[A/T]GRAAATATKR</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATC</left_flank>
        <right_flank>GAAAATATTGAGAACAATGGAAATAAGCACTTTTAGTTCGTAAATTTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATAATATCAGAAGTGTTTTGTTAGTTGACACATTTTTGATATCTCTTCTAGAAACCGACATAAACAGGCTCAAAATTGACAGTGTGAGGGCTCTTCTATTACAGGTTTTATGGTGTCCCCAAAATGAAACATCTCCCCACTTAACTACCCACGCATTTTGAGTCCGAGCACTGAACCAGGTAGCCACATCTAATTCGCTTTCTTTTCATCAAGCCTTAACTTGAAATTCTATTCATTCGATTCCAAAATTGACGTGCTGCAACAAAGCTCTCTCTCTTTTTTTGGTCACAAGTCAGTAGAGTCATTTGCGTTGGTCTCTTCACTTCAATCATCACTCCCTTTGGGACCCATTTTCTGCTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAAGCCAAAAAAGACTCACTTGCACTCCAGATCCCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACAATGGAAATAAGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTGGAGGGAGTCTAGAAATGTGGAACTTTTGGAATTTCAGATGATGGACCCTTCTAGTGGAAAATGGCTAACTATAGATGAGGACTTAATATTTGTCCCTTCGGTCAGAAAGTTTCAGAATTCATAAATAAACTGAACAGGATGGCGCAAAATTACAGGTAAGAACGGGTATATCTTTGAACATAAGTATCTTGGAAGCACGAAAATTGGTAGAGATATAATTTTACGTTTGATTTTAAGCTATTGAAATTTTCAAGCCGATTCCTTAAGTGTAGGTATTGCTATGATTTTTTAGAGATGAACGGCGTTAGGTTTTTCATAAGATGAAGCAATGACAAACGATAACACAGCTCAATGTTGATCAAACANNNNNNNNNNAGGTAAACACGTGAAAAACCACTGTCGGTCACTTGAAAAAATGGCTATCAGGCTCCGTGG</canonical>
            <polymorphic>TCATAATATCAGAAGTGTTTTGTTAGTTGACACATTTTTGATATCTCTTCTAGAAACCGACATAAACAGGCTCAAAATTGACAGTGTGAGGGCTCTTCTATTACAGGTTTTATGGTGTCCCCAAAATGAAACATCTCCCCACTTAACTACCCACGCATTTTGAGTCCGAGCACTGAACCAGGTAGCCACATCTAATTCGCTTTCTTTTCATCAAGCCTTAACTTGAAATTCTATTCATTCGATTCCAAAATTGACGTGCTGCAACAAAGCTCTCTCTCTTTTTTTGGTCACAAGTCAGTAGAGTCATTTGCGTTGGTCTCTTCACTTCAATCATCACTCCCTTTGGGACCCATTTTCTGCTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAAGCCAAAAAAGACTCACTTGCACTCCAGATCCCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCWGAAAATATTGAGAACAATGGAAATAAGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTGGAGGGAGTCTAGAAATGTGGAACTTTTGGAATTTCAGATGATGGACCCTTCTAGTGGAAAATGGCTAACTATAGATGAGGACTTAATATTTGTCCCTTCGGTCAGAAAGTTTCAGAATTCATAAATAAACTGAACAGGATGGCGCAAAATTACAGGTAAGAACGGGTATATCTTTGAACATAAGTATCTTGGAAGCACGAAAATTGGTAGAGATATAATTTTACGTTTGATTTTAAGCTATTGAAATTTTCAAGCCGATTCCTTAAGTGTAGGTATTGCTATGATTTTTTAGAGATGAACGGCGTTAGGTTTTTCATAAGATGAAGCAATGACAAACGATAACACAGCTCAATGTTGATCAAACANNNNNNNNNNAGGTAAACACGTGAAAAACCACTGTCGGTCACTTGAAAAAATGGCTATCAGGCTCCGTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTCACTTGCACTCCAGAT</pcr_primer_p1>
		<pcr_primer_p2>GGGACAAATATTAAGTCCTCATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACTCACTTGCACTCCAGATCCCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACAATGGAAATAAGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTGGAGGGAGTCTAGAAATGTGGAACTTTTGGAATTTCAGATGATGGACCCTTCTAGTGGAAAATGGCTAACTATAGATGAGGACTTAATATTTGTCCC</canonical_amplicon>
		<polymorphic_amplicon>GACTCACTTGCACTCCAGATCCCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCWGAAAATATTGAGAACAATGGAAATAAGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTGGAGGGAGTCTAGAAATGTGGAACTTTTGGAATTTCAGATGATGGACCCTTCTAGTGGAAAATGGCTAACTATAGATGAGGACTTAATATTTGTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8450</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>200314</contig_pos>
        <strand>+</strand>
        <context>CTTTGGGRCC[A/C]ATTTTCTGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAGTCATTTGCGTTGGTCTCTTCACTTCAATCATCACTCCCTTTGGGACC</left_flank>
        <right_flank>ATTTTCTGCTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTAAAATTTCAGATTTCTAATTAAAAAGCTAATTTGAAAAATTCTGTAAACCCTGTATTAGAAGAGTCCCCTAACATTTAAATTTGTGTCAATTTATTTCGTATCCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAAGTGTTTTGTTAGTTGACACATTTTTGATATCTCTTCTAGAAACCGACATAAACAGGCTCAAAATTGACAGTGTGAGGGCTCTTCTATTACAGGTTTTATGGTGTCCCCAAAATGAAACATCTCCCCACTTAACTACCCACGCATTTTGAGTCCGAGCACTGAACCAGGTAGCCACATCTAATTCGCTTTCTTTTCATCAAGCCTTAACTTGAAATTCTATTCATTCGATTCCAAAATTGACGTGCTGCAACAAAGCTCTCTCTCTTTTTTTGGTCACAAGTCAGTAGAGTCATTTGCGTTGGTCTCTTCACTTCAATCATCACTCCCTTTGGGACCCATTTTCTGCTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAAGCCAAAAAAGACTCACTTGCACTCCAGATCCCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACAATGGAAATAAGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTGGAGGGAGTCTAGAAATGTGGAACTTTTGGAATTTCAGATGATGGACCCTTCTAGTGGAAAATGGCTAACTATAGATGAGGACTTAATATTTGTCCCTTCGGTCAGAAAGTTTCAGAATTCATAAATAAACTGAACAGGATGGCGCAAAATTACAGGTAAGAACGGGTATATCTTTGAACATAAGTATCTTGGAAGCACGAAAATTGGTAGAGATATAATTTTACGTTTGATTTTAAGCTATTGAAATTTTCAAGCCGATTCCTTAAGTGTAGGTATTGCTATGATT</canonical>
            <polymorphic>TCTTAAAATTTCAGATTTCTAATTAAAAAGCTAATTTGAAAAATTCTGTAAACCCTGTATTAGAAGAGTCCCCTAACATTTAAATTTGTGTCAATTTATTTCGTATCCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAAGTGTTTTGTTAGTTGACACATTTTTGATATCTCTTCTAGAAACCGACATAAACAGGCTCAAAATTGACAGTGTGAGGGCTCTTCTATTACAGGTTTTATGGTGTCCCCAAAATGAAACATCTCCCCACTTAACTACCCACGCATTTTGAGTCCGAGCACTGAACCAGGTAGCCACATCTAATTCGCTTTCTTTTCATCAAGCCTTAACTTGAAATTCTATTCATTCGATTCCAAAATTGACGTGCTGCAACAAAGCTCTCTCTCTTTTTTTGGTCACAAGTCAGTAGAGTCATTTGCGTTGGTCTCTTCACTTCAATCATCACTCCCTTTGGGACCMATTTTCTGCTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAAGCCAAAAAAGACTCACTTGCACTCCAGATCCCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACAATGGAAATAAGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTGGAGGGAGTCTAGAAATGTGGAACTTTTGGAATTTCAGATGATGGACCCTTCTAGTGGAAAATGGCTAACTATAGATGAGGACTTAATATTTGTCCCTTCGGTCAGAAAGTTTCAGAATTCATAAATAAACTGAACAGGATGGCGCAAAATTACAGGTAAGAACGGGTATATCTTTGAACATAAGTATCTTGGAAGCACGAAAATTGGTAGAGATATAATTTTACGTTTGATTTTAAGCTATTGAAATTTTCAAGCCGATTCCTTAAGTGTAGGTATTGCTATGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGGWCCC</site>
                <isoschizomers>
                    <enzyme>SanDI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTCACAAGTCAGTAGAGTCATT</pcr_primer_p1>
		<pcr_primer_p2>TAAAAGTGCTTATTTCCATTGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTCACAAGTCAGTAGAGTCATTTGCGTTGGTCTCTTCACTTCAATCATCACTCCCTTTGGGACCCATTTTCTGCTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAAGCCAAAAAAGACTCACTTGCACTCCAGATCCCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACAATGGAAATAAGCACTTTTA</canonical_amplicon>
		<polymorphic_amplicon>GGTCACAAGTCAGTAGAGTCATTTGCGTTGGTCTCTTCACTTCAATCATCACTCCCTTTGGGACCMATTTTCTGCTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAAGCCAAAAAAGACTCACTTGCACTCCAGATCCCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACAATGGAAATAAGCACTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8451</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>200311</contig_pos>
        <strand>+</strand>
        <context>TCCCTTTGGG[A/G]CCMATTTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAGAGTCATTTGCGTTGGTCTCTTCACTTCAATCATCACTCCCTTTGGG</left_flank>
        <right_flank>CCCATTTTCTGCTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATCTTAAAATTTCAGATTTCTAATTAAAAAGCTAATTTGAAAAATTCTGTAAACCCTGTATTAGAAGAGTCCCCTAACATTTAAATTTGTGTCAATTTATTTCGTATCCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAAGTGTTTTGTTAGTTGACACATTTTTGATATCTCTTCTAGAAACCGACATAAACAGGCTCAAAATTGACAGTGTGAGGGCTCTTCTATTACAGGTTTTATGGTGTCCCCAAAATGAAACATCTCCCCACTTAACTACCCACGCATTTTGAGTCCGAGCACTGAACCAGGTAGCCACATCTAATTCGCTTTCTTTTCATCAAGCCTTAACTTGAAATTCTATTCATTCGATTCCAAAATTGACGTGCTGCAACAAAGCTCTCTCTCTTTTTTTGGTCACAAGTCAGTAGAGTCATTTGCGTTGGTCTCTTCACTTCAATCATCACTCCCTTTGGGACCCATTTTCTGCTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAAGCCAAAAAAGACTCACTTGCACTCCAGATCCCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACAATGGAAATAAGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTGGAGGGAGTCTAGAAATGTGGAACTTTTGGAATTTCAGATGATGGACCCTTCTAGTGGAAAATGGCTAACTATAGATGAGGACTTAATATTTGTCCCTTCGGTCAGAAAGTTTCAGAATTCATAAATAAACTGAACAGGATGGCGCAAAATTACAGGTAAGAACGGGTATATCTTTGAACATAAGTATCTTGGAAGCACGAAAATTGGTAGAGATATAATTTTACGTTTGATTTTAAGCTATTGAAATTTTCAAGCCGATTCCTTAAGTGTAGGTATTGCTATG</canonical>
            <polymorphic>GAATCTTAAAATTTCAGATTTCTAATTAAAAAGCTAATTTGAAAAATTCTGTAAACCCTGTATTAGAAGAGTCCCCTAACATTTAAATTTGTGTCAATTTATTTCGTATCCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAAGTGTTTTGTTAGTTGACACATTTTTGATATCTCTTCTAGAAACCGACATAAACAGGCTCAAAATTGACAGTGTGAGGGCTCTTCTATTACAGGTTTTATGGTGTCCCCAAAATGAAACATCTCCCCACTTAACTACCCACGCATTTTGAGTCCGAGCACTGAACCAGGTAGCCACATCTAATTCGCTTTCTTTTCATCAAGCCTTAACTTGAAATTCTATTCATTCGATTCCAAAATTGACGTGCTGCAACAAAGCTCTCTCTCTTTTTTTGGTCACAAGTCAGTAGAGTCATTTGCGTTGGTCTCTTCACTTCAATCATCACTCCCTTTGGGRCCCATTTTCTGCTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAAGCCAAAAAAGACTCACTTGCACTCCAGATCCCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACAATGGAAATAAGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTGGAGGGAGTCTAGAAATGTGGAACTTTTGGAATTTCAGATGATGGACCCTTCTAGTGGAAAATGGCTAACTATAGATGAGGACTTAATATTTGTCCCTTCGGTCAGAAAGTTTCAGAATTCATAAATAAACTGAACAGGATGGCGCAAAATTACAGGTAAGAACGGGTATATCTTTGAACATAAGTATCTTGGAAGCACGAAAATTGGTAGAGATATAATTTTACGTTTGATTTTAAGCTATTGAAATTTTCAAGCCGATTCCTTAAGTGTAGGTATTGCTATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>498 262 240</canonical_bands>
                <polymorphic_bands>760 240</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGGWCCC</site>
                <isoschizomers>
                    <enzyme>SanDI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTCACAAGTCAGTAGAGTCATT</pcr_primer_p1>
		<pcr_primer_p2>TAAAAGTGCTTATTTCCATTGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTCACAAGTCAGTAGAGTCATTTGCGTTGGTCTCTTCACTTCAATCATCACTCCCTTTGGGACCCATTTTCTGCTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAAGCCAAAAAAGACTCACTTGCACTCCAGATCCCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACAATGGAAATAAGCACTTTTA</canonical_amplicon>
		<polymorphic_amplicon>GGTCACAAGTCAGTAGAGTCATTTGCGTTGGTCTCTTCACTTCAATCATCACTCCCTTTGGGRCCCATTTTCTGCTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAAGCCAAAAAAGACTCACTTGCACTCCAGATCCCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACAATGGAAATAAGCACTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8452</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>200281</contig_pos>
        <strand>+</strand>
        <context>TTGCGTTGGT[C/T]TCTTCACTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCTCTCTCTCTTTTTTTGGTCACAAGTCAGTAGAGTCATTTGCGTTGGT</left_flank>
        <right_flank>TCTTCACTTCAATCATCACTCCCTTTGGGACCCATTTTCTGCTTTTTCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGTCTTTCTTTCCAATTCTGAAAATCAGGAATCTTAAAATTTCAGATTTCTAATTAAAAAGCTAATTTGAAAAATTCTGTAAACCCTGTATTAGAAGAGTCCCCTAACATTTAAATTTGTGTCAATTTATTTCGTATCCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAAGTGTTTTGTTAGTTGACACATTTTTGATATCTCTTCTAGAAACCGACATAAACAGGCTCAAAATTGACAGTGTGAGGGCTCTTCTATTACAGGTTTTATGGTGTCCCCAAAATGAAACATCTCCCCACTTAACTACCCACGCATTTTGAGTCCGAGCACTGAACCAGGTAGCCACATCTAATTCGCTTTCTTTTCATCAAGCCTTAACTTGAAATTCTATTCATTCGATTCCAAAATTGACGTGCTGCAACAAAGCTCTCTCTCTTTTTTTGGTCACAAGTCAGTAGAGTCATTTGCGTTGGTCTCTTCACTTCAATCATCACTCCCTTTGGGACCCATTTTCTGCTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAAGCCAAAAAAGACTCACTTGCACTCCAGATCCCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACAATGGAAATAAGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTGGAGGGAGTCTAGAAATGTGGAACTTTTGGAATTTCAGATGATGGACCCTTCTAGTGGAAAATGGCTAACTATAGATGAGGACTTAATATTTGTCCCTTCGGTCAGAAAGTTTCAGAATTCATAAATAAACTGAACAGGATGGCGCAAAATTACAGGTAAGAACGGGTATATCTTTGAACATAAGTATCTTGGAAGCACGAAAATTGGTAGAGATATAATTTTACGTTTGATTTTAAGCTATTGAAATTTTCAA</canonical>
            <polymorphic>GAAGTCTTTCTTTCCAATTCTGAAAATCAGGAATCTTAAAATTTCAGATTTCTAATTAAAAAGCTAATTTGAAAAATTCTGTAAACCCTGTATTAGAAGAGTCCCCTAACATTTAAATTTGTGTCAATTTATTTCGTATCCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAAGTGTTTTGTTAGTTGACACATTTTTGATATCTCTTCTAGAAACCGACATAAACAGGCTCAAAATTGACAGTGTGAGGGCTCTTCTATTACAGGTTTTATGGTGTCCCCAAAATGAAACATCTCCCCACTTAACTACCCACGCATTTTGAGTCCGAGCACTGAACCAGGTAGCCACATCTAATTCGCTTTCTTTTCATCAAGCCTTAACTTGAAATTCTATTCATTCGATTCCAAAATTGACGTGCTGCAACAAAGCTCTCTCTCTTTTTTTGGTCACAAGTCAGTAGAGTCATTTGCGTTGGTYTCTTCACTTCAATCATCACTCCCTTTGGGACCCATTTTCTGCTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAAGCCAAAAAAGACTCACTTGCACTCCAGATCCCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACAATGGAAATAAGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTGGAGGGAGTCTAGAAATGTGGAACTTTTGGAATTTCAGATGATGGACCCTTCTAGTGGAAAATGGCTAACTATAGATGAGGACTTAATATTTGTCCCTTCGGTCAGAAAGTTTCAGAATTCATAAATAAACTGAACAGGATGGCGCAAAATTACAGGTAAGAACGGGTATATCTTTGAACATAAGTATCTTGGAAGCACGAAAATTGGTAGAGATATAATTTTACGTTTGATTTTAAGCTATTGAAATTTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTAACTACCCACGCATTTT</pcr_primer_p1>
		<pcr_primer_p2>GTCAGAGTACACAATGCAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTAACTACCCACGCATTTTGAGTCCGAGCACTGAACCAGGTAGCCACATCTAATTCGCTTTCTTTTCATCAAGCCTTAACTTGAAATTCTATTCATTCGATTCCAAAATTGACGTGCTGCAACAAAGCTCTCTCTCTTTTTTTGGTCACAAGTCAGTAGAGTCATTTGCGTTGGTCTCTTCACTTCAATCATCACTCCCTTTGGGACCCATTTTCTGCTTTTTCTGCTTTTGCATTGTGTACTCTGAC</canonical_amplicon>
		<polymorphic_amplicon>ACTTAACTACCCACGCATTTTGAGTCCGAGCACTGAACCAGGTAGCCACATCTAATTCGCTTTCTTTTCATCAAGCCTTAACTTGAAATTCTATTCATTCGATTCCAAAATTGACGTGCTGCAACAAAGCTCTCTCTCTTTTTTTGGTCACAAGTCAGTAGAGTCATTTGCGTTGGTYTCTTCACTTCAATCATCACTCCCTTTGGGACCCATTTTCTGCTTTTTCTGCTTTTGCATTGTGTACTCTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8458</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>245664</contig_pos>
        <strand>+</strand>
        <context>GAAAATCAAA[C/G]TGTACGGGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATTGTGGAGACAATCGAAAAAATCGAAAGCGGCAAAACTGAAAATCAAA</left_flank>
        <right_flank>TGTACGGGTTGCACAAAGACACCTTCTGGACAGTGTTCAAAAGTTTCACG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAAATATCCGAAAAAACTAGGAATTTTCTAAAAACTCTGTAAATGCAAAGTTTTCAATCTAGGTATGTTTTACATTCTCCAAAGTTATCAATGTCATTGGAAACTTGACAGCCGAGCTCCAGACTCCTGAAAAAAGAAAAAAATATATCAAAACTAATCGAGTGTCACCCGACCAGTCACATTTGAGCTCAATTATCTCGGTTCCTATAAAAGATATCAAAAGTCTGTCAACTAATAAAATATTGCTCATATTATGATAAACATTTTATCAATTGACAGGTTCTTAATATCTTGTTTAGGAGCCGAGATAATTGAGCTCAAAGTTGACAATCAAGGGAGCTCTTCTAATGCAGGTTTTCATATTTCCGAATTTCCAGGCGAGTAAAGTCGATGAAAAAATGTCCGGTGCCCAGCTATTTTCAATTATCTCCAACGCGGGAATGGCTGCAATTGTGGAGACAATCGAAAAAATCGAAAGCGGCAAAACTGAAAATCAAAGTGTACGGGTTGCACAAAGACACCTTCTGGACAGTGTTCAAAAGTTTCACGACACTAAACTTTAATTTTTTTTGGAATTAATGAATTGCTCAGTTTTTTGTGTTGTGCTTTATTTAGATTCGGTCATCTGTTTCATTGAAAAAGTATATTATAAAACACATTGCCTTTATCATTGGGCCAATTTTAGAAGTTCCCGAAGACGTCTTCTCGTGACGTCTTCTTCTTCTTCTCCTTCTCTATTCAACATCTTCTTGCCCTCAGTTGCTCATTAGAGAGCAAAAAAAAGAAGAGGAGCATTCAATTAATTTTCCTTTACAATCAACCCGTAATGAATGAATGAGTTGAGTTCCCCGCCCATTGAGAAGTCTGATTCCAGGAATTGTCTCAGAAAGAAAAGGGCTTAGTCTTTGCAATCTAGTGCTTTTTGATGATTCATTTTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGT</canonical>
            <polymorphic>GCAAATATCCGAAAAAACTAGGAATTTTCTAAAAACTCTGTAAATGCAAAGTTTTCAATCTAGGTATGTTTTACATTCTCCAAAGTTATCAATGTCATTGGAAACTTGACAGCCGAGCTCCAGACTCCTGAAAAAAGAAAAAAATATATCAAAACTAATCGAGTGTCACCCGACCAGTCACATTTGAGCTCAATTATCTCGGTTCCTATAAAAGATATCAAAAGTCTGTCAACTAATAAAATATTGCTCATATTATGATAAACATTTTATCAATTGACAGGTTCTTAATATCTTGTTTAGGAGCCGAGATAATTGAGCTCAAAGTTGACAATCAAGGGAGCTCTTCTAATGCAGGTTTTCATATTTCCGAATTTCCAGGCGAGTAAAGTCGATGAAAAAATGTCCGGTGCCCAGCTATTTTCAATTATCTCCAACGCGGGAATGGCTGCAATTGTGGAGACAATCGAAAAAATCGAAAGCGGCAAAACTGAAAATCAAASTGTACGGGTTGCACAAAGACACCTTCTGGACAGTGTTCAAAAGTTTCACGACACTAAACTTTAATTTTTTTTGGAATTAATGAATTGCTCAGTTTTTTGTGTTGTGCTTTATTTAGATTCGGTCATCTGTTTCATTGAAAAAGTATATTATAAAACACATTGCCTTTATCATTGGGCCAATTTTAGAAGTTCCCGAAGACGTCTTCTCGTGACGTCTTCTTCTTCTTCTCCTTCTCTATTCAACATCTTCTTGCCCTCAGTTGCTCATTAGAGAGCAAAAAAAAGAAGAGGAGCATTCAATTAATTTTCCTTTACAATCAACCCGTAATGAATGAATGAGTTGAGTTCCCCGCCCATTGAGAAGTCTGATTCCAGGAATTGTCTCAGAAAGAAAAGGGCTTAGTCTTTGCAATCTAGTGCTTTTTGATGATTCATTTTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>229 208 165 55 54 51 48 47 46 26 14 13 12 11 8 5 5 3</canonical_bands>
                <polymorphic_bands>229 208 165 57 55 54 51 48 47 26 14 13 12 8 5 5 3</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 230 176 96</canonical_bands>
                <polymorphic_bands>674 230 96</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGAGTAAAGTCGATGAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAGATGACCGAATCTAAATAAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCGAGTAAAGTCGATGAAAAAATGTCCGGTGCCCAGCTATTTTCAATTATCTCCAACGCGGGAATGGCTGCAATTGTGGAGACAATCGAAAAAATCGAAAGCGGCAAAACTGAAAATCAAAGTGTACGGGTTGCACAAAGACACCTTCTGGACAGTGTTCAAAAGTTTCACGACACTAAACTTTAATTTTTTTTGGAATTAATGAATTGCTCAGTTTTTTGTGTTGTGCTTTATTTAGATTCGGTCATCTG</canonical_amplicon>
		<polymorphic_amplicon>GCGAGTAAAGTCGATGAAAAAATGTCCGGTGCCCAGCTATTTTCAATTATCTCCAACGCGGGAATGGCTGCAATTGTGGAGACAATCGAAAAAATCGAAAGCGGCAAAACTGAAAATCAAASTGTACGGGTTGCACAAAGACACCTTCTGGACAGTGTTCAAAAGTTTCACGACACTAAACTTTAATTTTTTTTGGAATTAATGAATTGCTCAGTTTTTTGTGTTGTGCTTTATTTAGATTCGGTCATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8459</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>245704</contig_pos>
        <strand>+</strand>
        <context>ACAGTGTTCA[A/G]AAGTTTCACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAATCAAAGTGTACGGGTTGCACAAAGACACCTTCTGGACAGTGTTCA</left_flank>
        <right_flank>AAGTTTCACGACACTAAACTTTAATTTTTTTTGGAATTAATGAATTGCTC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATGCAAAGTTTTCAATCTAGGTATGTTTTACATTCTCCAAAGTTATCAATGTCATTGGAAACTTGACAGCCGAGCTCCAGACTCCTGAAAAAAGAAAAAAATATATCAAAACTAATCGAGTGTCACCCGACCAGTCACATTTGAGCTCAATTATCTCGGTTCCTATAAAAGATATCAAAAGTCTGTCAACTAATAAAATATTGCTCATATTATGATAAACATTTTATCAATTGACAGGTTCTTAATATCTTGTTTAGGAGCCGAGATAATTGAGCTCAAAGTTGACAATCAAGGGAGCTCTTCTAATGCAGGTTTTCATATTTCCGAATTTCCAGGCGAGTAAAGTCGATGAAAAAATGTCCGGTGCCCAGCTATTTTCAATTATCTCCAACGCGGGAATGGCTGCAATTGTGGAGACAATCGAAAAAATCGAAAGCGGCAAAACTGAAAATCAAAGTGTACGGGTTGCACAAAGACACCTTCTGGACAGTGTTCAAAAGTTTCACGACACTAAACTTTAATTTTTTTTGGAATTAATGAATTGCTCAGTTTTTTGTGTTGTGCTTTATTTAGATTCGGTCATCTGTTTCATTGAAAAAGTATATTATAAAACACATTGCCTTTATCATTGGGCCAATTTTAGAAGTTCCCGAAGACGTCTTCTCGTGACGTCTTCTTCTTCTTCTCCTTCTCTATTCAACATCTTCTTGCCCTCAGTTGCTCATTAGAGAGCAAAAAAAAGAAGAGGAGCATTCAATTAATTTTCCTTTACAATCAACCCGTAATGAATGAATGAGTTGAGTTCCCCGCCCATTGAGAAGTCTGATTCCAGGAATTGTCTCAGAAAGAAAAGGGCTTAGTCTTTGCAATCTAGTGCTTTTTGATGATTCATTTTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTAACGGTGTACAACGGTTAATGTCACTCTGCGTACAGCTGT</canonical>
            <polymorphic>TAAATGCAAAGTTTTCAATCTAGGTATGTTTTACATTCTCCAAAGTTATCAATGTCATTGGAAACTTGACAGCCGAGCTCCAGACTCCTGAAAAAAGAAAAAAATATATCAAAACTAATCGAGTGTCACCCGACCAGTCACATTTGAGCTCAATTATCTCGGTTCCTATAAAAGATATCAAAAGTCTGTCAACTAATAAAATATTGCTCATATTATGATAAACATTTTATCAATTGACAGGTTCTTAATATCTTGTTTAGGAGCCGAGATAATTGAGCTCAAAGTTGACAATCAAGGGAGCTCTTCTAATGCAGGTTTTCATATTTCCGAATTTCCAGGCGAGTAAAGTCGATGAAAAAATGTCCGGTGCCCAGCTATTTTCAATTATCTCCAACGCGGGAATGGCTGCAATTGTGGAGACAATCGAAAAAATCGAAAGCGGCAAAACTGAAAATCAAAGTGTACGGGTTGCACAAAGACACCTTCTGGACAGTGTTCARAAGTTTCACGACACTAAACTTTAATTTTTTTTGGAATTAATGAATTGCTCAGTTTTTTGTGTTGTGCTTTATTTAGATTCGGTCATCTGTTTCATTGAAAAAGTATATTATAAAACACATTGCCTTTATCATTGGGCCAATTTTAGAAGTTCCCGAAGACGTCTTCTCGTGACGTCTTCTTCTTCTTCTCCTTCTCTATTCAACATCTTCTTGCCCTCAGTTGCTCATTAGAGAGCAAAAAAAAGAAGAGGAGCATTCAATTAATTTTCCTTTACAATCAACCCGTAATGAATGAATGAGTTGAGTTCCCCGCCCATTGAGAAGTCTGATTCCAGGAATTGTCTCAGAAAGAAAAGGGCTTAGTCTTTGCAATCTAGTGCTTTTTGATGATTCATTTTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTAACGGTGTACAACGGTTAATGTCACTCTGCGTACAGCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGAGTAAAGTCGATGAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAGATGACCGAATCTAAATAAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCGAGTAAAGTCGATGAAAAAATGTCCGGTGCCCAGCTATTTTCAATTATCTCCAACGCGGGAATGGCTGCAATTGTGGAGACAATCGAAAAAATCGAAAGCGGCAAAACTGAAAATCAAAGTGTACGGGTTGCACAAAGACACCTTCTGGACAGTGTTCAAAAGTTTCACGACACTAAACTTTAATTTTTTTTGGAATTAATGAATTGCTCAGTTTTTTGTGTTGTGCTTTATTTAGATTCGGTCATCTG</canonical_amplicon>
		<polymorphic_amplicon>GCGAGTAAAGTCGATGAAAAAATGTCCGGTGCCCAGCTATTTTCAATTATCTCCAACGCGGGAATGGCTGCAATTGTGGAGACAATCGAAAAAATCGAAAGCGGCAAAACTGAAAATCAAAGTGTACGGGTTGCACAAAGACACCTTCTGGACAGTGTTCARAAGTTTCACGACACTAAACTTTAATTTTTTTTGGAATTAATGAATTGCTCAGTTTTTTGTGTTGTGCTTTATTTAGATTCGGTCATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8460</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>248051</contig_pos>
        <strand>+</strand>
        <context>TTTGAATATT[C/T]TAAAATGTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACTGAATATAAAGTAGTTACGTACATTCATAGAGAGAGTTTTGAATATT</left_flank>
        <right_flank>TAAAATGTAAGATCATATCTAGTCTGACCCCTTTTCATTAGACTAAAATA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGACATTTTAAGATTCTGAGATTCTGAGATTTTGAAAAAACTTCAGTTCTGAAATTCGGATCACGGTTATTCGGCCCCTTTTATTATATTTTTTTTCAATCCATCTGCGATTTAAGAATTGTTTTTCTTCCTGAAAAAAGTTTCATAAACCAACACTTCCTCCTTGACATCATTCTGAAAATGTTTCCAATTTAAACCCTCTTCAATTCCCAGAATACAACATCCTGAAATCAATTTTTTCAGATTTTTTTTCAGCTACACAACAAAACAAAAAATCACCTGCGAATATTTCTCCCAAGTCTTCTATGTCTTAAAATAGCCAAGAAAAAAATTTCAATCCCCAAAACTTTTTTACCACGATGATTAAAACTTCAACCAACGAATATTGGTCTAAAAACAAAAATTTCGCTCTTGTTTTGTTTTTGATGGAGGAGGAACAACAAAAAAACACTGAATATAAAGTAGTTACGTACATTCATAGAGAGAGTTTTGAATATTTTAAAATGTAAGATCATATCTAGTCTGACCCCTTTTCATTAGACTAAAATATCCCGAAGAGAATTTCTTATGAATTGTAGCCGTGTGAAAAAAGAGCCGCAAGGCTCCAATGGGTTGGAAAATGGTCAAAAATCATAGAAAGCCATAAGGATTAACTTTTTGAACTTTTTGAAGTTTCTAGATTTGATGAGTTATCTCGTTTGATCAGGTCTCATTTTTGACTGATAAAATTGAACTTTTTATGTTTAGGTTTAAAAAATTAGGTTCCTTTTGTTGTAAGATTTTCAAAAACCTTCTTCAACACTTTTCAATTTTTGTTACAGGTGTGCCCCATGATCATGATCTGTTTCATGTTCTTACCGTATTTGCTCTAAAAGACGCTCAATCCAAACCTTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCATAAATCAGTCAGCTGATAAATTATTCATCACTTTGTCACCATTATTTTATCAGCAGACCATTTT</canonical>
            <polymorphic>CTGACATTTTAAGATTCTGAGATTCTGAGATTTTGAAAAAACTTCAGTTCTGAAATTCGGATCACGGTTATTCGGCCCCTTTTATTATATTTTTTTTCAATCCATCTGCGATTTAAGAATTGTTTTTCTTCCTGAAAAAAGTTTCATAAACCAACACTTCCTCCTTGACATCATTCTGAAAATGTTTCCAATTTAAACCCTCTTCAATTCCCAGAATACAACATCCTGAAATCAATTTTTTCAGATTTTTTTTCAGCTACACAACAAAACAAAAAATCACCTGCGAATATTTCTCCCAAGTCTTCTATGTCTTAAAATAGCCAAGAAAAAAATTTCAATCCCCAAAACTTTTTTACCACGATGATTAAAACTTCAACCAACGAATATTGGTCTAAAAACAAAAATTTCGCTCTTGTTTTGTTTTTGATGGAGGAGGAACAACAAAAAAACACTGAATATAAAGTAGTTACGTACATTCATAGAGAGAGTTTTGAATATTYTAAAATGTAAGATCATATCTAGTCTGACCCCTTTTCATTAGACTAAAATATCCCGAAGAGAATTTCTTATGAATTGTAGCCGTGTGAAAAAAGAGCCGCAAGGCTCCAATGGGTTGGAAAATGGTCAAAAATCATAGAAAGCCATAAGGATTAACTTTTTGAACTTTTTGAAGTTTCTAGATTTGATGAGTTATCTCGTTTGATCAGGTCTCATTTTTGACTGATAAAATTGAACTTTTTATGTTTAGGTTTAAAAAATTAGGTTCCTTTTGTTGTAAGATTTTCAAAAACCTTCTTCAACACTTTTCAATTTTTGTTACAGGTGTGCCCCATGATCATGATCTGTTTCATGTTCTTACCGTATTTGCTCTAAAAGACGCTCAATCCAAACCTTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCATAAATCAGTCAGCTGATAAATTATTCATCACTTTGTCACCATTATTTTATCAGCAGACCATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>307 251 248 194</canonical_bands>
                <polymorphic_bands>558 248 194</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>249 151 135 119 104 100 80 53 9</canonical_bands>
                <polymorphic_bands>286 249 119 104 100 80 53 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTCTTAAAATAGCCAAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCGGGATATTTTAGTCTAATGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTCTTAAAATAGCCAAGAAAAAAATTTCAATCCCCAAAACTTTTTTACCACGATGATTAAAACTTCAACCAACGAATATTGGTCTAAAAACAAAAATTTCGCTCTTGTTTTGTTTTTGATGGAGGAGGAACAACAAAAAAACACTGAATATAAAGTAGTTACGTACATTCATAGAGAGAGTTTTGAATATTTTAAAATGTAAGATCATATCTAGTCTGACCCCTTTTCATTAGACTAAAATATCCCGAA</canonical_amplicon>
		<polymorphic_amplicon>TGTCTTAAAATAGCCAAGAAAAAAATTTCAATCCCCAAAACTTTTTTACCACGATGATTAAAACTTCAACCAACGAATATTGGTCTAAAAACAAAAATTTCGCTCTTGTTTTGTTTTTGATGGAGGAGGAACAACAAAAAAACACTGAATATAAAGTAGTTACGTACATTCATAGAGAGAGTTTTGAATATTYTAAAATGTAAGATCATATCTAGTCTGACCCCTTTTCATTAGACTAAAATATCCCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8461</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>247926</contig_pos>
        <strand>+</strand>
        <context>TTRAAACTTC[A/G]ACCAACGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAAAAATTTCAATCCCCAAAACTTTTTTACCACGATGATTAAAACTTC</left_flank>
        <right_flank>ACCAACGAATATTGGTCTAAAAACAAAAATTTCGCTCTTGTTTTGTTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAAGAAAAGAACGAAGTTAAATTCTTGCCATTTCTTTTCGAAATAAGCTTTATTTGTATAAGTTACACTTAAAAGTTCTGATATTCGGAGATTCTGCAATTCTGAATTTTAGATCCTTAGATTCTGACATTTTAAGATTCTGAGATTCTGAGATTTTGAAAAAACTTCAGTTCTGAAATTCGGATCACGGTTATTCGGCCCCTTTTATTATATTTTTTTTCAATCCATCTGCGATTTAAGAATTGTTTTTCTTCCTGAAAAAAGTTTCATAAACCAACACTTCCTCCTTGACATCATTCTGAAAATGTTTCCAATTTAAACCCTCTTCAATTCCCAGAATACAACATCCTGAAATCAATTTTTTCAGATTTTTTTTCAGCTACACAACAAAACAAAAAATCACCTGCGAATATTTCTCCCAAGTCTTCTATGTCTTAAAATAGCCAAGAAAAAAATTTCAATCCCCAAAACTTTTTTACCACGATGATTAAAACTTCAACCAACGAATATTGGTCTAAAAACAAAAATTTCGCTCTTGTTTTGTTTTTGATGGAGGAGGAACAACAAAAAAACACTGAATATAAAGTAGTTACGTACATTCATAGAGAGAGTTTTGAATATTTTAAAATGTAAGATCATATCTAGTCTGACCCCTTTTCATTAGACTAAAATATCCCGAAGAGAATTTCTTATGAATTGTAGCCGTGTGAAAAAAGAGCCGCAAGGCTCCAATGGGTTGGAAAATGGTCAAAAATCATAGAAAGCCATAAGGATTAACTTTTTGAACTTTTTGAAGTTTCTAGATTTGATGAGTTATCTCGTTTGATCAGGTCTCATTTTTGACTGATAAAATTGAACTTTTTATGTTTAGGTTTAAAAAATTAGGTTCCTTTTGTTGTAAGATTTTCAAAAACCTTCTTCAACACTTTTCAATTTTTGTTACAGGTGTGCCCCATGATCATGATCTGTTTCATGTTCTTACCGTATTTGCTCTAAAA</canonical>
            <polymorphic>ATTAAGAAAAGAACGAAGTTAAATTCTTGCCATTTCTTTTCGAAATAAGCTTTATTTGTATAAGTTACACTTAAAAGTTCTGATATTCGGAGATTCTGCAATTCTGAATTTTAGATCCTTAGATTCTGACATTTTAAGATTCTGAGATTCTGAGATTTTGAAAAAACTTCAGTTCTGAAATTCGGATCACGGTTATTCGGCCCCTTTTATTATATTTTTTTTCAATCCATCTGCGATTTAAGAATTGTTTTTCTTCCTGAAAAAAGTTTCATAAACCAACACTTCCTCCTTGACATCATTCTGAAAATGTTTCCAATTTAAACCCTCTTCAATTCCCAGAATACAACATCCTGAAATCAATTTTTTCAGATTTTTTTTCAGCTACACAACAAAACAAAAAATCACCTGCGAATATTTCTCCCAAGTCTTCTATGTCTTAAAATAGCCAAGAAAAAAATTTCAATCCCCAAAACTTTTTTACCACGATGATTAAAACTTCRACCAACGAATATTGGTCTAAAAACAAAAATTTCGCTCTTGTTTTGTTTTTGATGGAGGAGGAACAACAAAAAAACACTGAATATAAAGTAGTTACGTACATTCATAGAGAGAGTTTTGAATATTTTAAAATGTAAGATCATATCTAGTCTGACCCCTTTTCATTAGACTAAAATATCCCGAAGAGAATTTCTTATGAATTGTAGCCGTGTGAAAAAAGAGCCGCAAGGCTCCAATGGGTTGGAAAATGGTCAAAAATCATAGAAAGCCATAAGGATTAACTTTTTGAACTTTTTGAAGTTTCTAGATTTGATGAGTTATCTCGTTTGATCAGGTCTCATTTTTGACTGATAAAATTGAACTTTTTATGTTTAGGTTTAAAAAATTAGGTTCCTTTTGTTGTAAGATTTTCAAAAACCTTCTTCAACACTTTTCAATTTTTGTTACAGGTGTGCCCCATGATCATGATCTGTTTCATGTTCTTACCGTATTTGCTCTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCTTAAAATAGCCAAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCGGGATATTTTAGTCTAATGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTCTTAAAATAGCCAAGAAAAAAATTTCAATCCCCAAAACTTTTTTACCACGATGATTAAAACTTCAACCAACGAATATTGGTCTAAAAACAAAAATTTCGCTCTTGTTTTGTTTTTGATGGAGGAGGAACAACAAAAAAACACTGAATATAAAGTAGTTACGTACATTCATAGAGAGAGTTTTGAATATTTTAAAATGTAAGATCATATCTAGTCTGACCCCTTTTCATTAGACTAAAATATCCCGAA</canonical_amplicon>
		<polymorphic_amplicon>TGTCTTAAAATAGCCAAGAAAAAAATTTCAATCCCCAAAACTTTTTTACCACGATGATTAAAACTTCRACCAACGAATATTGGTCTAAAAACAAAAATTTCGCTCTTGTTTTGTTTTTGATGGAGGAGGAACAACAAAAAAACACTGAATATAAAGTAGTTACGTACATTCATAGAGAGAGTTTTGAATATTTTAAAATGTAAGATCATATCTAGTCTGACCCCTTTTCATTAGACTAAAATATCCCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8462</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>247918</contig_pos>
        <strand>+</strand>
        <context>CACGATGATT[A/G]AAACTTCRAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAGCCAAGAAAAAAATTTCAATCCCCAAAACTTTTTTACCACGATGATT</left_flank>
        <right_flank>AAACTTCAACCAACGAATATTGGTCTAAAAACAAAAATTTCGCTCTTGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGACTGAAATTAAGAAAAGAACGAAGTTAAATTCTTGCCATTTCTTTTCGAAATAAGCTTTATTTGTATAAGTTACACTTAAAAGTTCTGATATTCGGAGATTCTGCAATTCTGAATTTTAGATCCTTAGATTCTGACATTTTAAGATTCTGAGATTCTGAGATTTTGAAAAAACTTCAGTTCTGAAATTCGGATCACGGTTATTCGGCCCCTTTTATTATATTTTTTTTCAATCCATCTGCGATTTAAGAATTGTTTTTCTTCCTGAAAAAAGTTTCATAAACCAACACTTCCTCCTTGACATCATTCTGAAAATGTTTCCAATTTAAACCCTCTTCAATTCCCAGAATACAACATCCTGAAATCAATTTTTTCAGATTTTTTTTCAGCTACACAACAAAACAAAAAATCACCTGCGAATATTTCTCCCAAGTCTTCTATGTCTTAAAATAGCCAAGAAAAAAATTTCAATCCCCAAAACTTTTTTACCACGATGATTAAAACTTCAACCAACGAATATTGGTCTAAAAACAAAAATTTCGCTCTTGTTTTGTTTTTGATGGAGGAGGAACAACAAAAAAACACTGAATATAAAGTAGTTACGTACATTCATAGAGAGAGTTTTGAATATTTTAAAATGTAAGATCATATCTAGTCTGACCCCTTTTCATTAGACTAAAATATCCCGAAGAGAATTTCTTATGAATTGTAGCCGTGTGAAAAAAGAGCCGCAAGGCTCCAATGGGTTGGAAAATGGTCAAAAATCATAGAAAGCCATAAGGATTAACTTTTTGAACTTTTTGAAGTTTCTAGATTTGATGAGTTATCTCGTTTGATCAGGTCTCATTTTTGACTGATAAAATTGAACTTTTTATGTTTAGGTTTAAAAAATTAGGTTCCTTTTGTTGTAAGATTTTCAAAAACCTTCTTCAACACTTTTCAATTTTTGTTACAGGTGTGCCCCATGATCATGATCTGTTTCATGTTCTTACCGTATTTG</canonical>
            <polymorphic>AGACTGAAATTAAGAAAAGAACGAAGTTAAATTCTTGCCATTTCTTTTCGAAATAAGCTTTATTTGTATAAGTTACACTTAAAAGTTCTGATATTCGGAGATTCTGCAATTCTGAATTTTAGATCCTTAGATTCTGACATTTTAAGATTCTGAGATTCTGAGATTTTGAAAAAACTTCAGTTCTGAAATTCGGATCACGGTTATTCGGCCCCTTTTATTATATTTTTTTTCAATCCATCTGCGATTTAAGAATTGTTTTTCTTCCTGAAAAAAGTTTCATAAACCAACACTTCCTCCTTGACATCATTCTGAAAATGTTTCCAATTTAAACCCTCTTCAATTCCCAGAATACAACATCCTGAAATCAATTTTTTCAGATTTTTTTTCAGCTACACAACAAAACAAAAAATCACCTGCGAATATTTCTCCCAAGTCTTCTATGTCTTAAAATAGCCAAGAAAAAAATTTCAATCCCCAAAACTTTTTTACCACGATGATTRAAACTTCAACCAACGAATATTGGTCTAAAAACAAAAATTTCGCTCTTGTTTTGTTTTTGATGGAGGAGGAACAACAAAAAAACACTGAATATAAAGTAGTTACGTACATTCATAGAGAGAGTTTTGAATATTTTAAAATGTAAGATCATATCTAGTCTGACCCCTTTTCATTAGACTAAAATATCCCGAAGAGAATTTCTTATGAATTGTAGCCGTGTGAAAAAAGAGCCGCAAGGCTCCAATGGGTTGGAAAATGGTCAAAAATCATAGAAAGCCATAAGGATTAACTTTTTGAACTTTTTGAAGTTTCTAGATTTGATGAGTTATCTCGTTTGATCAGGTCTCATTTTTGACTGATAAAATTGAACTTTTTATGTTTAGGTTTAAAAAATTAGGTTCCTTTTGTTGTAAGATTTTCAAAAACCTTCTTCAACACTTTTCAATTTTTGTTACAGGTGTGCCCCATGATCATGATCTGTTTCATGTTCTTACCGTATTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>151 135 119 116 104 100 80 63 53 52 17 10</canonical_bands>
                <polymorphic_bands>188 151 119 116 104 100 80 63 52 17 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTCTTAAAATAGCCAAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCGGGATATTTTAGTCTAATGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTCTTAAAATAGCCAAGAAAAAAATTTCAATCCCCAAAACTTTTTTACCACGATGATTAAAACTTCAACCAACGAATATTGGTCTAAAAACAAAAATTTCGCTCTTGTTTTGTTTTTGATGGAGGAGGAACAACAAAAAAACACTGAATATAAAGTAGTTACGTACATTCATAGAGAGAGTTTTGAATATTTTAAAATGTAAGATCATATCTAGTCTGACCCCTTTTCATTAGACTAAAATATCCCGAA</canonical_amplicon>
		<polymorphic_amplicon>TGTCTTAAAATAGCCAAGAAAAAAATTTCAATCCCCAAAACTTTTTTACCACGATGATTRAAACTTCAACCAACGAATATTGGTCTAAAAACAAAAATTTCGCTCTTGTTTTGTTTTTGATGGAGGAGGAACAACAAAAAAACACTGAATATAAAGTAGTTACGTACATTCATAGAGAGAGTTTTGAATATTTTAAAATGTAAGATCATATCTAGTCTGACCCCTTTTCATTAGACTAAAATATCCCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8463</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>247843</contig_pos>
        <strand></strand>
        <context>TGCGAATATT[T/C]CTCCCAAGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAGATTTTTTTTCAGCTACACAACAAAACAAAAAATCACCTGCGAATATT</left_flank>
        <right_flank>CTCCCAAGTCTTCTATGTCTTAAAATAGCCAAGAAAAAAATTTCAATCCC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCTGGAGCCAGATGGAGCCAAGCGTATCTATGACGCGATGTTCAAGCTAACTATCAATTCCTGGAACTGGTTCAGACTGAAATTAAGAAAAGAACGAAGTTAAATTCTTGCCATTTCTTTTCGAAATAAGCTTTATTTGTATAAGTTACACTTAAAAGTTCTGATATTCGGAGATTCTGCAATTCTGAATTTTAGATCCTTAGATTCTGACATTTTAAGATTCTGAGATTCTGAGATTTTGAAAAAACTTCAGTTCTGAAATTCGGATCACGGTTATTCGGCCCCTTTTATTATATTTTTTTTCAATCCATCTGCGATTTAAGAATTGTTTTTCTTCCTGAAAAAAGTTTCATAAACCAACACTTCCTCCTTGACATCATTCTGAAAATGTTTCCAATTTAAACCCTCTTCAATTCCCAGAATACAACATCCTGAAATCAATTTTTTCAGATTTTTTTTCAGCTACACAACAAAACAAAAAATCACCTGCGAATATTTCTCCCAAGTCTTCTATGTCTTAAAATAGCCAAGAAAAAAATTTCAATCCCCAAAACTTTTTTACCACGATGATTAAAACTTCAACCAACGAATATTGGTCTAAAAACAAAAATTTCGCTCTTGTTTTGTTTTTGATGGAGGAGGAACAACAAAAAAACACTGAATATAAAGTAGTTACGTACATTCATAGAGAGAGTTTTGAATATTTTAAAATGTAAGATCATATCTAGTCTGACCCCTTTTCATTAGACTAAAATATCCCGAAGAGAATTTCTTATGAATTGTAGCCGTGTGAAAAAAGAGCCGCAAGGCTCCAATGGGTTGGAAAATGGTCAAAAATCATAGAAAGCCATAAGGATTAACTTTTTGAACTTTTTGAAGTTTCTAGATTTGATGAGTTATCTCGTTTGATCAGGTCTCATTTTTGACTGATAAAATTGAACTTTTTATGTTTAGGTTTAAAAAATTAGGTTCCTTTTGTTGTAAGATTTTCAAAAACC</canonical>
            <polymorphic>GAGCTGGAGCCAGATGGAGCCAAGCGTATCTATGACGCGATGTTCAAGCTAACTATCAATTCCTGGAACTGGTTCAGACTGAAATTAAGAAAAGAACGAAGTTAAATTCTTGCCATTTCTTTTCGAAATAAGCTTTATTTGTATAAGTTACACTTAAAAGTTCTGATATTCGGAGATTCTGCAATTCTGAATTTTAGATCCTTAGATTCTGACATTTTAAGATTCTGAGATTCTGAGATTTTGAAAAAACTTCAGTTCTGAAATTCGGATCACGGTTATTCGGCCCCTTTTATTATATTTTTTTTCAATCCATCTGCGATTTAAGAATTGTTTTTCTTCCTGAAAAAAGTTTCATAAACCAACACTTCCTCCTTGACATCATTCTGAAAATGTTTCCAATTTAAACCCTCTTCAATTCCCAGAATACAACATCCTGAAATCAATTTTTTCAGATTTTTTTTCAGCTACACAACAAAACAAAAAATCACCTGCGAATATTYCTCCCAAGTCTTCTATGTCTTAAAATAGCCAAGAAAAAAATTTCAATCCCCAAAACTTTTTTACCACGATGATTAAAACTTCAACCAACGAATATTGGTCTAAAAACAAAAATTTCGCTCTTGTTTTGTTTTTGATGGAGGAGGAACAACAAAAAAACACTGAATATAAAGTAGTTACGTACATTCATAGAGAGAGTTTTGAATATTTTAAAATGTAAGATCATATCTAGTCTGACCCCTTTTCATTAGACTAAAATATCCCGAAGAGAATTTCTTATGAATTGTAGCCGTGTGAAAAAAGAGCCGCAAGGCTCCAATGGGTTGGAAAATGGTCAAAAATCATAGAAAGCCATAAGGATTAACTTTTTGAACTTTTTGAAGTTTCTAGATTTGATGAGTTATCTCGTTTGATCAGGTCTCATTTTTGACTGATAAAATTGAACTTTTTATGTTTAGGTTTAAAAAATTAGGTTCCTTTTGTTGTAAGATTTTCAAAAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGAAAATGTTTCCAATTTA</pcr_primer_p1>
		<pcr_primer_p2>AAGAGCGAAATTTTTGTTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGAAAATGTTTCCAATTTAAACCCTCTTCAATTCCCAGAATACAACATCCTGAAATCAATTTTTTCAGATTTTTTTTCAGCTACACAACAAAACAAAAAATCACCTGCGAATATTTCTCCCAAGTCTTCTATGTCTTAAAATAGCCAAGAAAAAAATTTCAATCCCCAAAACTTTTTTACCACGATGATTAAAACTTCAACCAACGAATATTGGTCTAAAAACAAAAATTTCGCTCTT</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGAAAATGTTTCCAATTTAAACCCTCTTCAATTCCCAGAATACAACATCCTGAAATCAATTTTTTCAGATTTTTTTTCAGCTACACAACAAAACAAAAAATCACCTGCGAATATTYCTCCCAAGTCTTCTATGTCTTAAAATAGCCAAGAAAAAAATTTCAATCCCCAAAACTTTTTTACCACGATGATTAAAACTTCAACCAACGAATATTGGTCTAAAAACAAAAATTTCGCTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8464</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>247696</contig_pos>
        <strand>+</strand>
        <context>AAAAAAGTTT[C/T]ATAAACCAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCAATCCATCTGCGATTTAAGAATTGTTTTTCTTCCTGAAAAAAGTTT</left_flank>
        <right_flank>ATAAACCAACACTTCCTCCTTGACATCATTCTGAAAATGTTTCCAATTTA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAATAAGAAATTAAGTGACTGATCTGGGATCATGGAGCCAGGAGCATGGAGCCAGGAGCATGGAGCCAGGAGCATGGAGTCAGGAGCATGGAGCCAGGAGCAAGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCCAGATGGAGCCAAGCGTATCTATGACGCGATGTTCAAGCTAACTATCAATTCCTGGAACTGGTTCAGACTGAAATTAAGAAAAGAACGAAGTTAAATTCTTGCCATTTCTTTTCGAAATAAGCTTTATTTGTATAAGTTACACTTAAAAGTTCTGATATTCGGAGATTCTGCAATTCTGAATTTTAGATCCTTAGATTCTGACATTTTAAGATTCTGAGATTCTGAGATTTTGAAAAAACTTCAGTTCTGAAATTCGGATCACGGTTATTCGGCCCCTTTTATTATATTTTTTTTCAATCCATCTGCGATTTAAGAATTGTTTTTCTTCCTGAAAAAAGTTTCATAAACCAACACTTCCTCCTTGACATCATTCTGAAAATGTTTCCAATTTAAACCCTCTTCAATTCCCAGAATACAACATCCTGAAATCAATTTTTTCAGATTTTTTTTCAGCTACACAACAAAACAAAAAATCACCTGCGAATATTTCTCCCAAGTCTTCTATGTCTTAAAATAGCCAAGAAAAAAATTTCAATCCCCAAAACTTTTTTACCACGATGATTAAAACTTCAACCAACGAATATTGGTCTAAAAACAAAAATTTCGCTCTTGTTTTGTTTTTGATGGAGGAGGAACAACAAAAAAACACTGAATATAAAGTAGTTACGTACATTCATAGAGAGAGTTTTGAATATTTTAAAATGTAAGATCATATCTAGTCTGACCCCTTTTCATTAGACTAAAATATCCCGAAGAGAATTTCTTATGAATTGTAGCCGTGTGAAAAAAGAGCCGCAAGGCTCCAATGGGTTGGAAAATGGTCAAAAATCATAGAAAGCCAT</canonical>
            <polymorphic>ATAATAAGAAATTAAGTGACTGATCTGGGATCATGGAGCCAGGAGCATGGAGCCAGGAGCATGGAGCCAGGAGCATGGAGTCAGGAGCATGGAGCCAGGAGCAAGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCCAGATGGAGCCAAGCGTATCTATGACGCGATGTTCAAGCTAACTATCAATTCCTGGAACTGGTTCAGACTGAAATTAAGAAAAGAACGAAGTTAAATTCTTGCCATTTCTTTTCGAAATAAGCTTTATTTGTATAAGTTACACTTAAAAGTTCTGATATTCGGAGATTCTGCAATTCTGAATTTTAGATCCTTAGATTCTGACATTTTAAGATTCTGAGATTCTGAGATTTTGAAAAAACTTCAGTTCTGAAATTCGGATCACGGTTATTCGGCCCCTTTTATTATATTTTTTTTCAATCCATCTGCGATTTAAGAATTGTTTTTCTTCCTGAAAAAAGTTTYATAAACCAACACTTCCTCCTTGACATCATTCTGAAAATGTTTCCAATTTAAACCCTCTTCAATTCCCAGAATACAACATCCTGAAATCAATTTTTTCAGATTTTTTTTCAGCTACACAACAAAACAAAAAATCACCTGCGAATATTTCTCCCAAGTCTTCTATGTCTTAAAATAGCCAAGAAAAAAATTTCAATCCCCAAAACTTTTTTACCACGATGATTAAAACTTCAACCAACGAATATTGGTCTAAAAACAAAAATTTCGCTCTTGTTTTGTTTTTGATGGAGGAGGAACAACAAAAAAACACTGAATATAAAGTAGTTACGTACATTCATAGAGAGAGTTTTGAATATTTTAAAATGTAAGATCATATCTAGTCTGACCCCTTTTCATTAGACTAAAATATCCCGAAGAGAATTTCTTATGAATTGTAGCCGTGTGAAAAAAGAGCCGCAAGGCTCCAATGGGTTGGAAAATGGTCAAAAATCATAGAAAGCCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTCGGCCCCTTTTATTAT</pcr_primer_p1>
		<pcr_primer_p2>TGGCTATTTTAAGACATAGAAGACT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TATTCGGCCCCTTTTATTATATTTTTTTTCAATCCATCTGCGATTTAAGAATTGTTTTTCTTCCTGAAAAAAGTTTCATAAACCAACACTTCCTCCTTGACATCATTCTGAAAATGTTTCCAATTTAAACCCTCTTCAATTCCCAGAATACAACATCCTGAAATCAATTTTTTCAGATTTTTTTTCAGCTACACAACAAAACAAAAAATCACCTGCGAATATTTCTCCCAAGTCTTCTATGTCTTAAAATAGCCA</canonical_amplicon>
		<polymorphic_amplicon>TATTCGGCCCCTTTTATTATATTTTTTTTCAATCCATCTGCGATTTAAGAATTGTTTTTCTTCCTGAAAAAAGTTTYATAAACCAACACTTCCTCCTTGACATCATTCTGAAAATGTTTCCAATTTAAACCCTCTTCAATTCCCAGAATACAACATCCTGAAATCAATTTTTTCAGATTTTTTTTCAGCTACACAACAAAACAAAAAATCACCTGCGAATATTTCTCCCAAGTCTTCTATGTCTTAAAATAGCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8465</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>247673</contig_pos>
        <strand></strand>
        <context>TTTAAGAATT[G/T]TTTTTCTTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGGCCCCTTTTATTATATTTTTTTTCAATCCATCTGCGATTTAAGAATT</left_flank>
        <right_flank>TTTTTCTTCCTGAAAAAAGTTTCATAAACCAACACTTCCTCCTTGACATC</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAATGATGGTTTAGACTGAAAATAATAAGAAATTAAGTGACTGATCTGGGATCATGGAGCCAGGAGCATGGAGCCAGGAGCATGGAGCCAGGAGCATGGAGTCAGGAGCATGGAGCCAGGAGCAAGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCCAGATGGAGCCAAGCGTATCTATGACGCGATGTTCAAGCTAACTATCAATTCCTGGAACTGGTTCAGACTGAAATTAAGAAAAGAACGAAGTTAAATTCTTGCCATTTCTTTTCGAAATAAGCTTTATTTGTATAAGTTACACTTAAAAGTTCTGATATTCGGAGATTCTGCAATTCTGAATTTTAGATCCTTAGATTCTGACATTTTAAGATTCTGAGATTCTGAGATTTTGAAAAAACTTCAGTTCTGAAATTCGGATCACGGTTATTCGGCCCCTTTTATTATATTTTTTTTCAATCCATCTGCGATTTAAGAATTGTTTTTCTTCCTGAAAAAAGTTTCATAAACCAACACTTCCTCCTTGACATCATTCTGAAAATGTTTCCAATTTAAACCCTCTTCAATTCCCAGAATACAACATCCTGAAATCAATTTTTTCAGATTTTTTTTCAGCTACACAACAAAACAAAAAATCACCTGCGAATATTTCTCCCAAGTCTTCTATGTCTTAAAATAGCCAAGAAAAAAATTTCAATCCCCAAAACTTTTTTACCACGATGATTAAAACTTCAACCAACGAATATTGGTCTAAAAACAAAAATTTCGCTCTTGTTTTGTTTTTGATGGAGGAGGAACAACAAAAAAACACTGAATATAAAGTAGTTACGTACATTCATAGAGAGAGTTTTGAATATTTTAAAATGTAAGATCATATCTAGTCTGACCCCTTTTCATTAGACTAAAATATCCCGAAGAGAATTTCTTATGAATTGTAGCCGTGTGAAAAAAGAGCCGCAAGGCTCCAATGGGTTGGAAAAT</canonical>
            <polymorphic>GAAAATGATGGTTTAGACTGAAAATAATAAGAAATTAAGTGACTGATCTGGGATCATGGAGCCAGGAGCATGGAGCCAGGAGCATGGAGCCAGGAGCATGGAGTCAGGAGCATGGAGCCAGGAGCAAGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCCAGATGGAGCCAAGCGTATCTATGACGCGATGTTCAAGCTAACTATCAATTCCTGGAACTGGTTCAGACTGAAATTAAGAAAAGAACGAAGTTAAATTCTTGCCATTTCTTTTCGAAATAAGCTTTATTTGTATAAGTTACACTTAAAAGTTCTGATATTCGGAGATTCTGCAATTCTGAATTTTAGATCCTTAGATTCTGACATTTTAAGATTCTGAGATTCTGAGATTTTGAAAAAACTTCAGTTCTGAAATTCGGATCACGGTTATTCGGCCCCTTTTATTATATTTTTTTTCAATCCATCTGCGATTTAAGAATTKTTTTTCTTCCTGAAAAAAGTTTCATAAACCAACACTTCCTCCTTGACATCATTCTGAAAATGTTTCCAATTTAAACCCTCTTCAATTCCCAGAATACAACATCCTGAAATCAATTTTTTCAGATTTTTTTTCAGCTACACAACAAAACAAAAAATCACCTGCGAATATTTCTCCCAAGTCTTCTATGTCTTAAAATAGCCAAGAAAAAAATTTCAATCCCCAAAACTTTTTTACCACGATGATTAAAACTTCAACCAACGAATATTGGTCTAAAAACAAAAATTTCGCTCTTGTTTTGTTTTTGATGGAGGAGGAACAACAAAAAAACACTGAATATAAAGTAGTTACGTACATTCATAGAGAGAGTTTTGAATATTTTAAAATGTAAGATCATATCTAGTCTGACCCCTTTTCATTAGACTAAAATATCCCGAAGAGAATTTCTTATGAATTGTAGCCGTGTGAAAAAAGAGCCGCAAGGCTCCAATGGGTTGGAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTCGGCCCCTTTTATTAT</pcr_primer_p1>
		<pcr_primer_p2>TGGCTATTTTAAGACATAGAAGACT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TATTCGGCCCCTTTTATTATATTTTTTTTCAATCCATCTGCGATTTAAGAATTGTTTTTCTTCCTGAAAAAAGTTTCATAAACCAACACTTCCTCCTTGACATCATTCTGAAAATGTTTCCAATTTAAACCCTCTTCAATTCCCAGAATACAACATCCTGAAATCAATTTTTTCAGATTTTTTTTCAGCTACACAACAAAACAAAAAATCACCTGCGAATATTTCTCCCAAGTCTTCTATGTCTTAAAATAGCCA</canonical_amplicon>
		<polymorphic_amplicon>TATTCGGCCCCTTTTATTATATTTTTTTTCAATCCATCTGCGATTTAAGAATTKTTTTTCTTCCTGAAAAAAGTTTCATAAACCAACACTTCCTCCTTGACATCATTCTGAAAATGTTTCCAATTTAAACCCTCTTCAATTCCCAGAATACAACATCCTGAAATCAATTTTTTCAGATTTTTTTTCAGCTACACAACAAAACAAAAAATCACCTGCGAATATTTCTCCCAAGTCTTCTATGTCTTAAAATAGCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8467</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>256824</contig_pos>
        <strand>+</strand>
        <context>CTCCTTAAAT[C/T]TGTCTTTAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAAGGATTCTATCTAGTCTAGACTTTCAAGATTATTCTGCTCCTTAAAT</left_flank>
        <right_flank>TGTCTTTAATGTATAGTAGGAGTACAAGGGTAAATAACAACTACAATATA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTGTCAACTACAAAATGGAAGCTCTAATTTTGTTTAGTATACTCTGAAATTTTCAAACCAATTGAAAAATTTTGGACCACTTTTTTAGGACTACAAAATTAACTACCTTAAAACCTGTATTAAGAAGGACCTTTAACTTTTAACTTTGAATACTTATATCTCCTTTCCTGTAAAAGATATCAAAAAATGGTTTACTGATAAAATGTTTATCGTAATATCACAAACATTTTGTTAGTGGACTATGCTTCGATATCTTTCACAGGGCACGAGATAAAGTGACTCAAAGTTGAGGGTTTGGGTGACGTTCCATTTTTTGGCACCTATTTTGAATCTTGACAATTCCAGACACCCCACCTCCCTCCCTAAAATCGTGTTTTGCTTTCTTTTTTTATTCCGAGACCTCCCACATCCCAAGTTGTAACAAAAACATCTATATTACCACTGACCAAAGGATTCTATCTAGTCTAGACTTTCAAGATTATTCTGCTCCTTAAATCTGTCTTTAATGTATAGTAGGAGTACAAGGGTAAATAACAACTACAATATACTTCACTCGCTATTGTTGATATTCTGATAAATATTACTCATATCTCTGAATTGGTCATTTCCGTTTTTTATTCATTGAAAACCTTATTTCCGGAGAAAGGCGGGCCATAAACTTGCCAGCCCAAAATTTTCTTCCTGGATCTTTTTTCTGAACTTTACATCATCAAAATCCCACTTTCCTTTTGTTTGAGCCTAATGTCAGAAGTCGAAAAAAAAGAGGCAACTTGTGTTTCAAGGCAAATTAAGTGGACCAAAAAAAAGACGAAGTTCGTTAGCCGCTTTTTTTCTGGAATCCCCTTATTTTCAGTTATTTCTCCGCTGTTCGGAAACTTACGGCTTCTTCCCTCCTCCCATCGTTTACACTAATGAGAAGCCACTCGTCAATTTGTGCTTTTGTCTTCTTCTTCTTCTTGTATTCTCTTTTTTGACCACATCCCACCGCTCCGCTCGC</canonical>
            <polymorphic>AAGTTGTCAACTACAAAATGGAAGCTCTAATTTTGTTTAGTATACTCTGAAATTTTCAAACCAATTGAAAAATTTTGGACCACTTTTTTAGGACTACAAAATTAACTACCTTAAAACCTGTATTAAGAAGGACCTTTAACTTTTAACTTTGAATACTTATATCTCCTTTCCTGTAAAAGATATCAAAAAATGGTTTACTGATAAAATGTTTATCGTAATATCACAAACATTTTGTTAGTGGACTATGCTTCGATATCTTTCACAGGGCACGAGATAAAGTGACTCAAAGTTGAGGGTTTGGGTGACGTTCCATTTTTTGGCACCTATTTTGAATCTTGACAATTCCAGACACCCCACCTCCCTCCCTAAAATCGTGTTTTGCTTTCTTTTTTTATTCCGAGACCTCCCACATCCCAAGTTGTAACAAAAACATCTATATTACCACTGACCAAAGGATTCTATCTAGTCTAGACTTTCAAGATTATTCTGCTCCTTAAATYTGTCTTTAATGTATAGTAGGAGTACAAGGGTAAATAACAACTACAATATACTTCACTCGCTATTGTTGATATTCTGATAAATATTACTCATATCTCTGAATTGGTCATTTCCGTTTTTTATTCATTGAAAACCTTATTTCCGGAGAAAGGCGGGCCATAAACTTGCCAGCCCAAAATTTTCTTCCTGGATCTTTTTTCTGAACTTTACATCATCAAAATCCCACTTTCCTTTTGTTTGAGCCTAATGTCAGAAGTCGAAAAAAAAGAGGCAACTTGTGTTTCAAGGCAAATTAAGTGGACCAAAAAAAAGACGAAGTTCGTTAGCCGCTTTTTTTCTGGAATCCCCTTATTTTCAGTTATTTCTCCGCTGTTCGGAAACTTACGGCTTCTTCCCTCCTCCCATCGTTTACACTAATGAGAAGCCACTCGTCAATTTGTGCTTTTGTCTTCTTCTTCTTCTTGTATTCTCTTTTTTGACCACATCCCACCGCTCCGCTCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATCCCAAGTTGTAACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTTCTCCGGAAATAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ACATCCCAAGTTGTAACAAAAACATCTATATTACCACTGACCAAAGGATTCTATCTAGTCTAGACTTTCAAGATTATTCTGCTCCTTAAATCTGTCTTTAATGTATAGTAGGAGTACAAGGGTAAATAACAACTACAATATACTTCACTCGCTATTGTTGATATTCTGATAAATATTACTCATATCTCTGAATTGGTCATTTCCGTTTTTTATTCATTGAAAACCTTATTTCCGGAGAAAG</canonical_amplicon>
		<polymorphic_amplicon>ACATCCCAAGTTGTAACAAAAACATCTATATTACCACTGACCAAAGGATTCTATCTAGTCTAGACTTTCAAGATTATTCTGCTCCTTAAATYTGTCTTTAATGTATAGTAGGAGTACAAGGGTAAATAACAACTACAATATACTTCACTCGCTATTGTTGATATTCTGATAAATATTACTCATATCTCTGAATTGGTCATTTCCGTTTTTTATTCATTGAAAACCTTATTTCCGGAGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8468</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>256883</contig_pos>
        <strand>+</strand>
        <context>TACTTCACTC[C/G]CTATTGTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATGTATAGTAGGAGTACAAGGGTAAATAACAACTACAATATACTTCACTC</left_flank>
        <right_flank>CTATTGTTGATATTCTGATAAATATTACTCATATCTCTGAATTGGTCATT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAATTGAAAAATTTTGGACCACTTTTTTAGGACTACAAAATTAACTACCTTAAAACCTGTATTAAGAAGGACCTTTAACTTTTAACTTTGAATACTTATATCTCCTTTCCTGTAAAAGATATCAAAAAATGGTTTACTGATAAAATGTTTATCGTAATATCACAAACATTTTGTTAGTGGACTATGCTTCGATATCTTTCACAGGGCACGAGATAAAGTGACTCAAAGTTGAGGGTTTGGGTGACGTTCCATTTTTTGGCACCTATTTTGAATCTTGACAATTCCAGACACCCCACCTCCCTCCCTAAAATCGTGTTTTGCTTTCTTTTTTTATTCCGAGACCTCCCACATCCCAAGTTGTAACAAAAACATCTATATTACCACTGACCAAAGGATTCTATCTAGTCTAGACTTTCAAGATTATTCTGCTCCTTAAATCTGTCTTTAATGTATAGTAGGAGTACAAGGGTAAATAACAACTACAATATACTTCACTCGCTATTGTTGATATTCTGATAAATATTACTCATATCTCTGAATTGGTCATTTCCGTTTTTTATTCATTGAAAACCTTATTTCCGGAGAAAGGCGGGCCATAAACTTGCCAGCCCAAAATTTTCTTCCTGGATCTTTTTTCTGAACTTTACATCATCAAAATCCCACTTTCCTTTTGTTTGAGCCTAATGTCAGAAGTCGAAAAAAAAGAGGCAACTTGTGTTTCAAGGCAAATTAAGTGGACCAAAAAAAAGACGAAGTTCGTTAGCCGCTTTTTTTCTGGAATCCCCTTATTTTCAGTTATTTCTCCGCTGTTCGGAAACTTACGGCTTCTTCCCTCCTCCCATCGTTTACACTAATGAGAAGCCACTCGTCAATTTGTGCTTTTGTCTTCTTCTTCTTCTTGTATTCTCTTTTTTGACCACATCCCACCGCTCCGCTCGCTCTTCACTATTTTTTTCATAATCCTCTCGTCATTTATTATTTGTCTACTTATTTATATT</canonical>
            <polymorphic>ACCAATTGAAAAATTTTGGACCACTTTTTTAGGACTACAAAATTAACTACCTTAAAACCTGTATTAAGAAGGACCTTTAACTTTTAACTTTGAATACTTATATCTCCTTTCCTGTAAAAGATATCAAAAAATGGTTTACTGATAAAATGTTTATCGTAATATCACAAACATTTTGTTAGTGGACTATGCTTCGATATCTTTCACAGGGCACGAGATAAAGTGACTCAAAGTTGAGGGTTTGGGTGACGTTCCATTTTTTGGCACCTATTTTGAATCTTGACAATTCCAGACACCCCACCTCCCTCCCTAAAATCGTGTTTTGCTTTCTTTTTTTATTCCGAGACCTCCCACATCCCAAGTTGTAACAAAAACATCTATATTACCACTGACCAAAGGATTCTATCTAGTCTAGACTTTCAAGATTATTCTGCTCCTTAAATCTGTCTTTAATGTATAGTAGGAGTACAAGGGTAAATAACAACTACAATATACTTCACTCSCTATTGTTGATATTCTGATAAATATTACTCATATCTCTGAATTGGTCATTTCCGTTTTTTATTCATTGAAAACCTTATTTCCGGAGAAAGGCGGGCCATAAACTTGCCAGCCCAAAATTTTCTTCCTGGATCTTTTTTCTGAACTTTACATCATCAAAATCCCACTTTCCTTTTGTTTGAGCCTAATGTCAGAAGTCGAAAAAAAAGAGGCAACTTGTGTTTCAAGGCAAATTAAGTGGACCAAAAAAAAGACGAAGTTCGTTAGCCGCTTTTTTTCTGGAATCCCCTTATTTTCAGTTATTTCTCCGCTGTTCGGAAACTTACGGCTTCTTCCCTCCTCCCATCGTTTACACTAATGAGAAGCCACTCGTCAATTTGTGCTTTTGTCTTCTTCTTCTTCTTGTATTCTCTTTTTTGACCACATCCCACCGCTCCGCTCGCTCTTCACTATTTTTTTCATAATCCTCTCGTCATTTATTATTTGTCTACTTATTTATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTCAAGATTATTCTGCTCCT</pcr_primer_p1>
		<pcr_primer_p2>GGATTTTGATGATGTAAAGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTTCAAGATTATTCTGCTCCTTAAATCTGTCTTTAATGTATAGTAGGAGTACAAGGGTAAATAACAACTACAATATACTTCACTCGCTATTGTTGATATTCTGATAAATATTACTCATATCTCTGAATTGGTCATTTCCGTTTTTTATTCATTGAAAACCTTATTTCCGGAGAAAGGCGGGCCATAAACTTGCCAGCCCAAAATTTTCTTCCTGGATCTTTTTTCTGAACTTTACATCATCAAAATCC</canonical_amplicon>
		<polymorphic_amplicon>ACTTTCAAGATTATTCTGCTCCTTAAATCTGTCTTTAATGTATAGTAGGAGTACAAGGGTAAATAACAACTACAATATACTTCACTCSCTATTGTTGATATTCTGATAAATATTACTCATATCTCTGAATTGGTCATTTCCGTTTTTTATTCATTGAAAACCTTATTTCCGGAGAAAGGCGGGCCATAAACTTGCCAGCCCAAAATTTTCTTCCTGGATCTTTTTTCTGAACTTTACATCATCAAAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8469</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>256923</contig_pos>
        <strand>+</strand>
        <context>CATATCTCTG[A/G]ATTGGTCATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACTTCACTCGCTATTGTTGATATTCTGATAAATATTACTCATATCTCTG</left_flank>
        <right_flank>ATTGGTCATTTCCGTTTTTTATTCATTGAAAACCTTATTTCCGGAGAAAG</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTAACTACCTTAAAACCTGTATTAAGAAGGACCTTTAACTTTTAACTTTGAATACTTATATCTCCTTTCCTGTAAAAGATATCAAAAAATGGTTTACTGATAAAATGTTTATCGTAATATCACAAACATTTTGTTAGTGGACTATGCTTCGATATCTTTCACAGGGCACGAGATAAAGTGACTCAAAGTTGAGGGTTTGGGTGACGTTCCATTTTTTGGCACCTATTTTGAATCTTGACAATTCCAGACACCCCACCTCCCTCCCTAAAATCGTGTTTTGCTTTCTTTTTTTATTCCGAGACCTCCCACATCCCAAGTTGTAACAAAAACATCTATATTACCACTGACCAAAGGATTCTATCTAGTCTAGACTTTCAAGATTATTCTGCTCCTTAAATCTGTCTTTAATGTATAGTAGGAGTACAAGGGTAAATAACAACTACAATATACTTCACTCGCTATTGTTGATATTCTGATAAATATTACTCATATCTCTGAATTGGTCATTTCCGTTTTTTATTCATTGAAAACCTTATTTCCGGAGAAAGGCGGGCCATAAACTTGCCAGCCCAAAATTTTCTTCCTGGATCTTTTTTCTGAACTTTACATCATCAAAATCCCACTTTCCTTTTGTTTGAGCCTAATGTCAGAAGTCGAAAAAAAAGAGGCAACTTGTGTTTCAAGGCAAATTAAGTGGACCAAAAAAAAGACGAAGTTCGTTAGCCGCTTTTTTTCTGGAATCCCCTTATTTTCAGTTATTTCTCCGCTGTTCGGAAACTTACGGCTTCTTCCCTCCTCCCATCGTTTACACTAATGAGAAGCCACTCGTCAATTTGTGCTTTTGTCTTCTTCTTCTTCTTGTATTCTCTTTTTTGACCACATCCCACCGCTCCGCTCGCTCTTCACTATTTTTTTCATAATCCTCTCGTCATTTATTATTTGTCTACTTATTTATATTCTTAATGATTTCAGATGTCCTTCGACACCAACTCGACCAC</canonical>
            <polymorphic>AATTAACTACCTTAAAACCTGTATTAAGAAGGACCTTTAACTTTTAACTTTGAATACTTATATCTCCTTTCCTGTAAAAGATATCAAAAAATGGTTTACTGATAAAATGTTTATCGTAATATCACAAACATTTTGTTAGTGGACTATGCTTCGATATCTTTCACAGGGCACGAGATAAAGTGACTCAAAGTTGAGGGTTTGGGTGACGTTCCATTTTTTGGCACCTATTTTGAATCTTGACAATTCCAGACACCCCACCTCCCTCCCTAAAATCGTGTTTTGCTTTCTTTTTTTATTCCGAGACCTCCCACATCCCAAGTTGTAACAAAAACATCTATATTACCACTGACCAAAGGATTCTATCTAGTCTAGACTTTCAAGATTATTCTGCTCCTTAAATCTGTCTTTAATGTATAGTAGGAGTACAAGGGTAAATAACAACTACAATATACTTCACTCGCTATTGTTGATATTCTGATAAATATTACTCATATCTCTGRATTGGTCATTTCCGTTTTTTATTCATTGAAAACCTTATTTCCGGAGAAAGGCGGGCCATAAACTTGCCAGCCCAAAATTTTCTTCCTGGATCTTTTTTCTGAACTTTACATCATCAAAATCCCACTTTCCTTTTGTTTGAGCCTAATGTCAGAAGTCGAAAAAAAAGAGGCAACTTGTGTTTCAAGGCAAATTAAGTGGACCAAAAAAAAGACGAAGTTCGTTAGCCGCTTTTTTTCTGGAATCCCCTTATTTTCAGTTATTTCTCCGCTGTTCGGAAACTTACGGCTTCTTCCCTCCTCCCATCGTTTACACTAATGAGAAGCCACTCGTCAATTTGTGCTTTTGTCTTCTTCTTCTTCTTGTATTCTCTTTTTTGACCACATCCCACCGCTCCGCTCGCTCTTCACTATTTTTTTCATAATCCTCTCGTCATTTATTATTTGTCTACTTATTTATATTCTTAATGATTTCAGATGTCCTTCGACACCAACTCGACCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>299 198 177 124 102 51 27 22</canonical_bands>
                <polymorphic_bands>299 198 177 124 124 51 27</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>258 241 168 143 114 76 0</canonical_bands>
                <polymorphic_bands>334 241 168 143 114 0</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTTCAAGATTATTCTGCTCCT</pcr_primer_p1>
		<pcr_primer_p2>GGATTTTGATGATGTAAAGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTTCAAGATTATTCTGCTCCTTAAATCTGTCTTTAATGTATAGTAGGAGTACAAGGGTAAATAACAACTACAATATACTTCACTCGCTATTGTTGATATTCTGATAAATATTACTCATATCTCTGAATTGGTCATTTCCGTTTTTTATTCATTGAAAACCTTATTTCCGGAGAAAGGCGGGCCATAAACTTGCCAGCCCAAAATTTTCTTCCTGGATCTTTTTTCTGAACTTTACATCATCAAAATCC</canonical_amplicon>
		<polymorphic_amplicon>ACTTTCAAGATTATTCTGCTCCTTAAATCTGTCTTTAATGTATAGTAGGAGTACAAGGGTAAATAACAACTACAATATACTTCACTCGCTATTGTTGATATTCTGATAAATATTACTCATATCTCTGRATTGGTCATTTCCGTTTTTTATTCATTGAAAACCTTATTTCCGGAGAAAGGCGGGCCATAAACTTGCCAGCCCAAAATTTTCTTCCTGGATCTTTTTTCTGAACTTTACATCATCAAAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8470</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>259190</contig_pos>
        <strand>+</strand>
        <context>ATAGATCCTA[A/T]AGATCCTATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTA</left_flank>
        <right_flank>AGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGA</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTCTTCGGACTCGAAAATCATCCATACGTTCTAACGTTTGTGTGTAAGGTTAGTAGGCTTTATATGTATCAATGGAAATTGAATTGGGGACAAGAAAGAAACCCTCCCCACACACACACACAAAAACATTCATTAGCTAGATGAATAGGTTTTGCGGGGCGCGGCGGGGATACAAAGAAGGAAACCCAAAAGGAAGTGCGATATATGGAAAATAGAGGACCCAGAAGAAAAGTGTCCAGTGATGTTTGAGTGGCGAGAAAAGTTGAGAGTGACGTATTCCGCGCTTGACATATGAATCGGAGATAAGAGGGAGAGGGAGATAAGAATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAG</canonical>
            <polymorphic>GATTCTTCGGACTCGAAAATCATCCATACGTTCTAACGTTTGTGTGTAAGGTTAGTAGGCTTTATATGTATCAATGGAAATTGAATTGGGGACAAGAAAGAAACCCTCCCCACACACACACACAAAAACATTCATTAGCTAGATGAATAGGTTTTGCGGGGCGCGGCGGGGATACAAAGAAGGAAACCCAAAAGGAAGTGCGATATATGGAAAATAGAGGACCCAGAAGAAAAGTGTCCAGTGATGTTTGAGTGGCGAGAAAAGTTGAGAGTGACGTATTCCGCGCTTGACATATGAATCGGAGATAAGAGGGAGAGGGAGATAAGAATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTAWAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>498 479 9 9 5</canonical_bands>
                <polymorphic_bands>507 479 9 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTGAGATCAATGTATCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGCTCTGTTTCATGAGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>786</pcr_amplicon_size>
		<canonical_amplicon>GCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTG</canonical_amplicon>
		<polymorphic_amplicon>GCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTAWAGATCCTATTGGAGATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8471</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>259132</contig_pos>
        <strand>+</strand>
        <context>TTGTGATTTG[G/T]GAGAAGCTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTG</left_flank>
        <right_flank>GAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATA</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAATGGCTGCAGCGGACACTCTATGCCTTTTTTCACTTCTCTTCCTGCTTTGCCTCCGATTCTTCGGACTCGAAAATCATCCATACGTTCTAACGTTTGTGTGTAAGGTTAGTAGGCTTTATATGTATCAATGGAAATTGAATTGGGGACAAGAAAGAAACCCTCCCCACACACACACACAAAAACATTCATTAGCTAGATGAATAGGTTTTGCGGGGCGCGGCGGGGATACAAAGAAGGAAACCCAAAAGGAAGTGCGATATATGGAAAATAGAGGACCCAGAAGAAAAGTGTCCAGTGATGTTTGAGTGGCGAGAAAAGTTGAGAGTGACGTATTCCGCGCTTGACATATGAATCGGAGATAAGAGGGAGAGGGAGATAAGAATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGAT</canonical>
            <polymorphic>ACAATGGCTGCAGCGGACACTCTATGCCTTTTTTCACTTCTCTTCCTGCTTTGCCTCCGATTCTTCGGACTCGAAAATCATCCATACGTTCTAACGTTTGTGTGTAAGGTTAGTAGGCTTTATATGTATCAATGGAAATTGAATTGGGGACAAGAAAGAAACCCTCCCCACACACACACACAAAAACATTCATTAGCTAGATGAATAGGTTTTGCGGGGCGCGGCGGGGATACAAAGAAGGAAACCCAAAAGGAAGTGCGATATATGGAAAATAGAGGACCCAGAAGAAAAGTGTCCAGTGATGTTTGAGTGGCGAGAAAAGTTGAGAGTGACGTATTCCGCGCTTGACATATGAATCGGAGATAAGAGGGAGAGGGAGATAAGAATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGKGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACGTTCTAGAAAGATCATGACTAA</pcr_primer_p1>
		<pcr_primer_p2>TGCTCTGTTTCATGAGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>816</pcr_amplicon_size>
		<canonical_amplicon>AACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCT</canonical_amplicon>
		<polymorphic_amplicon>AACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGKGAGAAGCTGAGCAACAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8472</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>294396</contig_pos>
        <strand>+</strand>
        <context>ATAAAAACTG[A/G]GAARCACAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGATATTCACGCTGAAGATGAAGTAAGTTTAGAGATTCTATAAAAACTG</left_flank>
        <right_flank>GAAACACAAGTTTTAGTACTTTGATCGACCATCGCTTCTACACATTCTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTATCTCTCGATTAACCGCCTTGTTGCCATATATTTCCCCCTTAGGTATAACCTATTTTTTGGGATCAAAGCAACATTGGCTTTTCATATTCTCTATTATCTGGATCGAGTTCGAAATCTCACCTTTGAAAATATCGATCGTGGCAGTAAGTTTTCTTCATGCTCTACAAAAAACGAAGCACATCTAAACATTCAGATACCTCAAAATACATGCTTTATTCTGTGAAACACCTGGCCTACGGAGGCATTCTGGTGACACCCGATGGAATGTTCTATTGGGCTGTTGGCCTCGTCATTTTCCCATTTTTTGTGAACGCATTCACGTTTGCCAGATTCTATTATCTGAAAAATCAAGCGAGTCAGAATTCGGAAAAATTTAATAACGCCAAGAAGAATATGTCAATGTTCGTTCAAACGGTAATCCAGGATTCGTTATTCTCGGTCAGTGTGATATTCACGCTGAAGATGAAGTAAGTTTAGAGATTCTATAAAAACTGGGAAACACAAGTTTTAGTACTTTGATCGACCATCGCTTCTACACATTCTTCAGTCAGACTTTCTTATGGCAAAGTATTCATGTGATTGATGGGTTAGTTGTGAGGATCAATTTCGGTCCGTCGAAAGTTGCCGACAGCTGGCCGACCGCCGAGCGATAGCCGACCAAACTGATCGATCGGTCGGCGCGCCGACCGAATTCTTGAATTTGCGTTTCAACATGCTAGAGAGTGTTTGCGTAGACAGCACTTTTTTTACGACGCACTACTCCATAAATGCGCTGTGTGTCGTCGTAAAATAAAATGCTATCACTCGCAAGTTGACCCGCAAATTCAAGAGCTCGGTGGGCGCGCTTACCGATAGTTCAGCTTGGTCGGCGGTCGACCTGGAATCCCTATGCTCTTGTTTTTTTTTCCAGAATTATCATGATCCTCTTCAACGAACGTCTCTCTATAGGCAAAAACAAACGGATCAGTCCCAAGGAAAACTCGCAGAAAAACACT</canonical>
            <polymorphic>ATCTATCTCTCGATTAACCGCCTTGTTGCCATATATTTCCCCCTTAGGTATAACCTATTTTTTGGGATCAAAGCAACATTGGCTTTTCATATTCTCTATTATCTGGATCGAGTTCGAAATCTCACCTTTGAAAATATCGATCGTGGCAGTAAGTTTTCTTCATGCTCTACAAAAAACGAAGCACATCTAAACATTCAGATACCTCAAAATACATGCTTTATTCTGTGAAACACCTGGCCTACGGAGGCATTCTGGTGACACCCGATGGAATGTTCTATTGGGCTGTTGGCCTCGTCATTTTCCCATTTTTTGTGAACGCATTCACGTTTGCCAGATTCTATTATCTGAAAAATCAAGCGAGTCAGAATTCGGAAAAATTTAATAACGCCAAGAAGAATATGTCAATGTTCGTTCAAACGGTAATCCAGGATTCGTTATTCTCGGTCAGTGTGATATTCACGCTGAAGATGAAGTAAGTTTAGAGATTCTATAAAAACTGRGAAACACAAGTTTTAGTACTTTGATCGACCATCGCTTCTACACATTCTTCAGTCAGACTTTCTTATGGCAAAGTATTCATGTGATTGATGGGTTAGTTGTGAGGATCAATTTCGGTCCGTCGAAAGTTGCCGACAGCTGGCCGACCGCCGAGCGATAGCCGACCAAACTGATCGATCGGTCGGCGCGCCGACCGAATTCTTGAATTTGCGTTTCAACATGCTAGAGAGTGTTTGCGTAGACAGCACTTTTTTTACGACGCACTACTCCATAAATGCGCTGTGTGTCGTCGTAAAATAAAATGCTATCACTCGCAAGTTGACCCGCAAATTCAAGAGCTCGGTGGGCGCGCTTACCGATAGTTCAGCTTGGTCGGCGGTCGACCTGGAATCCCTATGCTCTTGTTTTTTTTTCCAGAATTATCATGATCCTCTTCAACGAACGTCTCTCTATAGGCAAAAACAAACGGATCAGTCCCAAGGAAAACTCGCAGAAAAACACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGAATTCGGAAAAATTTAATA</pcr_primer_p1>
		<pcr_primer_p2>AAATTGATCCTCACAACTAACC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCAGAATTCGGAAAAATTTAATAACGCCAAGAAGAATATGTCAATGTTCGTTCAAACGGTAATCCAGGATTCGTTATTCTCGGTCAGTGTGATATTCACGCTGAAGATGAAGTAAGTTTAGAGATTCTATAAAAACTGGGAAACACAAGTTTTAGTACTTTGATCGACCATCGCTTCTACACATTCTTCAGTCAGACTTTCTTATGGCAAAGTATTCATGTGATTGATGGGTTAGTTGTGAGGATCAATTT</canonical_amplicon>
		<polymorphic_amplicon>TCAGAATTCGGAAAAATTTAATAACGCCAAGAAGAATATGTCAATGTTCGTTCAAACGGTAATCCAGGATTCGTTATTCTCGGTCAGTGTGATATTCACGCTGAAGATGAAGTAAGTTTAGAGATTCTATAAAAACTGRGAAACACAAGTTTTAGTACTTTGATCGACCATCGCTTCTACACATTCTTCAGTCAGACTTTCTTATGGCAAAGTATTCATGTGATTGATGGGTTAGTTGTGAGGATCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8473</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>294400</contig_pos>
        <strand>+</strand>
        <context>AAACTGRGAA[A/G]CACAAGTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTCACGCTGAAGATGAAGTAAGTTTAGAGATTCTATAAAAACTGGGAA</left_flank>
        <right_flank>CACAAGTTTTAGTACTTTGATCGACCATCGCTTCTACACATTCTTCAGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTCTCGATTAACCGCCTTGTTGCCATATATTTCCCCCTTAGGTATAACCTATTTTTTGGGATCAAAGCAACATTGGCTTTTCATATTCTCTATTATCTGGATCGAGTTCGAAATCTCACCTTTGAAAATATCGATCGTGGCAGTAAGTTTTCTTCATGCTCTACAAAAAACGAAGCACATCTAAACATTCAGATACCTCAAAATACATGCTTTATTCTGTGAAACACCTGGCCTACGGAGGCATTCTGGTGACACCCGATGGAATGTTCTATTGGGCTGTTGGCCTCGTCATTTTCCCATTTTTTGTGAACGCATTCACGTTTGCCAGATTCTATTATCTGAAAAATCAAGCGAGTCAGAATTCGGAAAAATTTAATAACGCCAAGAAGAATATGTCAATGTTCGTTCAAACGGTAATCCAGGATTCGTTATTCTCGGTCAGTGTGATATTCACGCTGAAGATGAAGTAAGTTTAGAGATTCTATAAAAACTGGGAAACACAAGTTTTAGTACTTTGATCGACCATCGCTTCTACACATTCTTCAGTCAGACTTTCTTATGGCAAAGTATTCATGTGATTGATGGGTTAGTTGTGAGGATCAATTTCGGTCCGTCGAAAGTTGCCGACAGCTGGCCGACCGCCGAGCGATAGCCGACCAAACTGATCGATCGGTCGGCGCGCCGACCGAATTCTTGAATTTGCGTTTCAACATGCTAGAGAGTGTTTGCGTAGACAGCACTTTTTTTACGACGCACTACTCCATAAATGCGCTGTGTGTCGTCGTAAAATAAAATGCTATCACTCGCAAGTTGACCCGCAAATTCAAGAGCTCGGTGGGCGCGCTTACCGATAGTTCAGCTTGGTCGGCGGTCGACCTGGAATCCCTATGCTCTTGTTTTTTTTTCCAGAATTATCATGATCCTCTTCAACGAACGTCTCTCTATAGGCAAAAACAAACGGATCAGTCCCAAGGAAAACTCGCAGAAAAACACTTCTA</canonical>
            <polymorphic>ATCTCTCGATTAACCGCCTTGTTGCCATATATTTCCCCCTTAGGTATAACCTATTTTTTGGGATCAAAGCAACATTGGCTTTTCATATTCTCTATTATCTGGATCGAGTTCGAAATCTCACCTTTGAAAATATCGATCGTGGCAGTAAGTTTTCTTCATGCTCTACAAAAAACGAAGCACATCTAAACATTCAGATACCTCAAAATACATGCTTTATTCTGTGAAACACCTGGCCTACGGAGGCATTCTGGTGACACCCGATGGAATGTTCTATTGGGCTGTTGGCCTCGTCATTTTCCCATTTTTTGTGAACGCATTCACGTTTGCCAGATTCTATTATCTGAAAAATCAAGCGAGTCAGAATTCGGAAAAATTTAATAACGCCAAGAAGAATATGTCAATGTTCGTTCAAACGGTAATCCAGGATTCGTTATTCTCGGTCAGTGTGATATTCACGCTGAAGATGAAGTAAGTTTAGAGATTCTATAAAAACTGGGAARCACAAGTTTTAGTACTTTGATCGACCATCGCTTCTACACATTCTTCAGTCAGACTTTCTTATGGCAAAGTATTCATGTGATTGATGGGTTAGTTGTGAGGATCAATTTCGGTCCGTCGAAAGTTGCCGACAGCTGGCCGACCGCCGAGCGATAGCCGACCAAACTGATCGATCGGTCGGCGCGCCGACCGAATTCTTGAATTTGCGTTTCAACATGCTAGAGAGTGTTTGCGTAGACAGCACTTTTTTTACGACGCACTACTCCATAAATGCGCTGTGTGTCGTCGTAAAATAAAATGCTATCACTCGCAAGTTGACCCGCAAATTCAAGAGCTCGGTGGGCGCGCTTACCGATAGTTCAGCTTGGTCGGCGGTCGACCTGGAATCCCTATGCTCTTGTTTTTTTTTCCAGAATTATCATGATCCTCTTCAACGAACGTCTCTCTATAGGCAAAAACAAACGGATCAGTCCCAAGGAAAACTCGCAGAAAAACACTTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGAATTCGGAAAAATTTAATA</pcr_primer_p1>
		<pcr_primer_p2>AAATTGATCCTCACAACTAACC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCAGAATTCGGAAAAATTTAATAACGCCAAGAAGAATATGTCAATGTTCGTTCAAACGGTAATCCAGGATTCGTTATTCTCGGTCAGTGTGATATTCACGCTGAAGATGAAGTAAGTTTAGAGATTCTATAAAAACTGGGAAACACAAGTTTTAGTACTTTGATCGACCATCGCTTCTACACATTCTTCAGTCAGACTTTCTTATGGCAAAGTATTCATGTGATTGATGGGTTAGTTGTGAGGATCAATTT</canonical_amplicon>
		<polymorphic_amplicon>TCAGAATTCGGAAAAATTTAATAACGCCAAGAAGAATATGTCAATGTTCGTTCAAACGGTAATCCAGGATTCGTTATTCTCGGTCAGTGTGATATTCACGCTGAAGATGAAGTAAGTTTAGAGATTCTATAAAAACTGGGAARCACAAGTTTTAGTACTTTGATCGACCATCGCTTCTACACATTCTTCAGTCAGACTTTCTTATGGCAAAGTATTCATGTGATTGATGGGTTAGTTGTGAGGATCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8474</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>294696</contig_pos>
        <strand>+</strand>
        <context>GTAAAATAAA[A/G]TGCWATCACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTACGACGCACTACTCCATAAATGCGCTGTGTGTCGTCGTAAAATAAA</left_flank>
        <right_flank>TGCTATCACTCGCAAGTTGACCCGCAAATTCAAGAGCTCGGTGGGCGCGC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCCATTTTTTGTGAACGCATTCACGTTTGCCAGATTCTATTATCTGAAAAATCAAGCGAGTCAGAATTCGGAAAAATTTAATAACGCCAAGAAGAATATGTCAATGTTCGTTCAAACGGTAATCCAGGATTCGTTATTCTCGGTCAGTGTGATATTCACGCTGAAGATGAAGTAAGTTTAGAGATTCTATAAAAACTGGGAAACACAAGTTTTAGTACTTTGATCGACCATCGCTTCTACACATTCTTCAGTCAGACTTTCTTATGGCAAAGTATTCATGTGATTGATGGGTTAGTTGTGAGGATCAATTTCGGTCCGTCGAAAGTTGCCGACAGCTGGCCGACCGCCGAGCGATAGCCGACCAAACTGATCGATCGGTCGGCGCGCCGACCGAATTCTTGAATTTGCGTTTCAACATGCTAGAGAGTGTTTGCGTAGACAGCACTTTTTTTACGACGCACTACTCCATAAATGCGCTGTGTGTCGTCGTAAAATAAAATGCTATCACTCGCAAGTTGACCCGCAAATTCAAGAGCTCGGTGGGCGCGCTTACCGATAGTTCAGCTTGGTCGGCGGTCGACCTGGAATCCCTATGCTCTTGTTTTTTTTTCCAGAATTATCATGATCCTCTTCAACGAACGTCTCTCTATAGGCAAAAACAAACGGATCAGTCCCAAGGAAAACTCGCAGAAAAACACTTCTACAGTGGCCGCTACAGTACCACATACAGCACCGACCAGCCATCTTCCAGTAGTACATTGAGACTTTGCACTTTGACGAAAGTCAAGATGATGATTACTAATTTCTAGACTGATGATTATGTGATAGTGATTTGTCTAGACGCACTTTTAACGAGATTTCTAAATTTGGATTGTGAATGTATGTAGTTTGATCAGAAGGGCTTTCAGAAACTTGTTTACTGCCGATAAATATAAAAATGAACTATAAATGTTTACCGCATTTAAGATTATCGTATAGTGTCCAAAAACAAACTATGGA</canonical>
            <polymorphic>TCCCATTTTTTGTGAACGCATTCACGTTTGCCAGATTCTATTATCTGAAAAATCAAGCGAGTCAGAATTCGGAAAAATTTAATAACGCCAAGAAGAATATGTCAATGTTCGTTCAAACGGTAATCCAGGATTCGTTATTCTCGGTCAGTGTGATATTCACGCTGAAGATGAAGTAAGTTTAGAGATTCTATAAAAACTGGGAAACACAAGTTTTAGTACTTTGATCGACCATCGCTTCTACACATTCTTCAGTCAGACTTTCTTATGGCAAAGTATTCATGTGATTGATGGGTTAGTTGTGAGGATCAATTTCGGTCCGTCGAAAGTTGCCGACAGCTGGCCGACCGCCGAGCGATAGCCGACCAAACTGATCGATCGGTCGGCGCGCCGACCGAATTCTTGAATTTGCGTTTCAACATGCTAGAGAGTGTTTGCGTAGACAGCACTTTTTTTACGACGCACTACTCCATAAATGCGCTGTGTGTCGTCGTAAAATAAARTGCTATCACTCGCAAGTTGACCCGCAAATTCAAGAGCTCGGTGGGCGCGCTTACCGATAGTTCAGCTTGGTCGGCGGTCGACCTGGAATCCCTATGCTCTTGTTTTTTTTTCCAGAATTATCATGATCCTCTTCAACGAACGTCTCTCTATAGGCAAAAACAAACGGATCAGTCCCAAGGAAAACTCGCAGAAAAACACTTCTACAGTGGCCGCTACAGTACCACATACAGCACCGACCAGCCATCTTCCAGTAGTACATTGAGACTTTGCACTTTGACGAAAGTCAAGATGATGATTACTAATTTCTAGACTGATGATTATGTGATAGTGATTTGTCTAGACGCACTTTTAACGAGATTTCTAAATTTGGATTGTGAATGTATGTAGTTTGATCAGAAGGGCTTTCAGAAACTTGTTTACTGCCGATAAATATAAAAATGAACTATAAATGTTTACCGCATTTAAGATTATCGTATAGTGTCCAAAAACAAACTATGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTTCAACATGCTAGAGAGT</pcr_primer_p1>
		<pcr_primer_p2>CTATAGAGAGACGTTCGTTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CGTTTCAACATGCTAGAGAGTGTTTGCGTAGACAGCACTTTTTTTACGACGCACTACTCCATAAATGCGCTGTGTGTCGTCGTAAAATAAAATGCTATCACTCGCAAGTTGACCCGCAAATTCAAGAGCTCGGTGGGCGCGCTTACCGATAGTTCAGCTTGGTCGGCGGTCGACCTGGAATCCCTATGCTCTTGTTTTTTTTTCCAGAATTATCATGATCCTCTTCAACGAACGTCTCTCTATAG</canonical_amplicon>
		<polymorphic_amplicon>CGTTTCAACATGCTAGAGAGTGTTTGCGTAGACAGCACTTTTTTTACGACGCACTACTCCATAAATGCGCTGTGTGTCGTCGTAAAATAAARTGCTATCACTCGCAAGTTGACCCGCAAATTCAAGAGCTCGGTGGGCGCGCTTACCGATAGTTCAGCTTGGTCGGCGGTCGACCTGGAATCCCTATGCTCTTGTTTTTTTTTCCAGAATTATCATGATCCTCTTCAACGAACGTCTCTCTATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8475</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>294700</contig_pos>
        <strand>+</strand>
        <context>AATAAARTGC[A/T]ATCACTCGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACGACGCACTACTCCATAAATGCGCTGTGTGTCGTCGTAAAATAAAATGC</left_flank>
        <right_flank>ATCACTCGCAAGTTGACCCGCAAATTCAAGAGCTCGGTGGGCGCGCTTAC</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTGTGAACGCATTCACGTTTGCCAGATTCTATTATCTGAAAAATCAAGCGAGTCAGAATTCGGAAAAATTTAATAACGCCAAGAAGAATATGTCAATGTTCGTTCAAACGGTAATCCAGGATTCGTTATTCTCGGTCAGTGTGATATTCACGCTGAAGATGAAGTAAGTTTAGAGATTCTATAAAAACTGGGAAACACAAGTTTTAGTACTTTGATCGACCATCGCTTCTACACATTCTTCAGTCAGACTTTCTTATGGCAAAGTATTCATGTGATTGATGGGTTAGTTGTGAGGATCAATTTCGGTCCGTCGAAAGTTGCCGACAGCTGGCCGACCGCCGAGCGATAGCCGACCAAACTGATCGATCGGTCGGCGCGCCGACCGAATTCTTGAATTTGCGTTTCAACATGCTAGAGAGTGTTTGCGTAGACAGCACTTTTTTTACGACGCACTACTCCATAAATGCGCTGTGTGTCGTCGTAAAATAAAATGCTATCACTCGCAAGTTGACCCGCAAATTCAAGAGCTCGGTGGGCGCGCTTACCGATAGTTCAGCTTGGTCGGCGGTCGACCTGGAATCCCTATGCTCTTGTTTTTTTTTCCAGAATTATCATGATCCTCTTCAACGAACGTCTCTCTATAGGCAAAAACAAACGGATCAGTCCCAAGGAAAACTCGCAGAAAAACACTTCTACAGTGGCCGCTACAGTACCACATACAGCACCGACCAGCCATCTTCCAGTAGTACATTGAGACTTTGCACTTTGACGAAAGTCAAGATGATGATTACTAATTTCTAGACTGATGATTATGTGATAGTGATTTGTCTAGACGCACTTTTAACGAGATTTCTAAATTTGGATTGTGAATGTATGTAGTTTGATCAGAAGGGCTTTCAGAAACTTGTTTACTGCCGATAAATATAAAAATGAACTATAAATGTTTACCGCATTTAAGATTATCGTATAGTGTCCAAAAACAAACTATGGACAAC</canonical>
            <polymorphic>ATTTTTTGTGAACGCATTCACGTTTGCCAGATTCTATTATCTGAAAAATCAAGCGAGTCAGAATTCGGAAAAATTTAATAACGCCAAGAAGAATATGTCAATGTTCGTTCAAACGGTAATCCAGGATTCGTTATTCTCGGTCAGTGTGATATTCACGCTGAAGATGAAGTAAGTTTAGAGATTCTATAAAAACTGGGAAACACAAGTTTTAGTACTTTGATCGACCATCGCTTCTACACATTCTTCAGTCAGACTTTCTTATGGCAAAGTATTCATGTGATTGATGGGTTAGTTGTGAGGATCAATTTCGGTCCGTCGAAAGTTGCCGACAGCTGGCCGACCGCCGAGCGATAGCCGACCAAACTGATCGATCGGTCGGCGCGCCGACCGAATTCTTGAATTTGCGTTTCAACATGCTAGAGAGTGTTTGCGTAGACAGCACTTTTTTTACGACGCACTACTCCATAAATGCGCTGTGTGTCGTCGTAAAATAAAATGCWATCACTCGCAAGTTGACCCGCAAATTCAAGAGCTCGGTGGGCGCGCTTACCGATAGTTCAGCTTGGTCGGCGGTCGACCTGGAATCCCTATGCTCTTGTTTTTTTTTCCAGAATTATCATGATCCTCTTCAACGAACGTCTCTCTATAGGCAAAAACAAACGGATCAGTCCCAAGGAAAACTCGCAGAAAAACACTTCTACAGTGGCCGCTACAGTACCACATACAGCACCGACCAGCCATCTTCCAGTAGTACATTGAGACTTTGCACTTTGACGAAAGTCAAGATGATGATTACTAATTTCTAGACTGATGATTATGTGATAGTGATTTGTCTAGACGCACTTTTAACGAGATTTCTAAATTTGGATTGTGAATGTATGTAGTTTGATCAGAAGGGCTTTCAGAAACTTGTTTACTGCCGATAAATATAAAAATGAACTATAAATGTTTACCGCATTTAAGATTATCGTATAGTGTCCAAAAACAAACTATGGACAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTTCAACATGCTAGAGAGT</pcr_primer_p1>
		<pcr_primer_p2>CTATAGAGAGACGTTCGTTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CGTTTCAACATGCTAGAGAGTGTTTGCGTAGACAGCACTTTTTTTACGACGCACTACTCCATAAATGCGCTGTGTGTCGTCGTAAAATAAAATGCTATCACTCGCAAGTTGACCCGCAAATTCAAGAGCTCGGTGGGCGCGCTTACCGATAGTTCAGCTTGGTCGGCGGTCGACCTGGAATCCCTATGCTCTTGTTTTTTTTTCCAGAATTATCATGATCCTCTTCAACGAACGTCTCTCTATAG</canonical_amplicon>
		<polymorphic_amplicon>CGTTTCAACATGCTAGAGAGTGTTTGCGTAGACAGCACTTTTTTTACGACGCACTACTCCATAAATGCGCTGTGTGTCGTCGTAAAATAAAATGCWATCACTCGCAAGTTGACCCGCAAATTCAAGAGCTCGGTGGGCGCGCTTACCGATAGTTCAGCTTGGTCGGCGGTCGACCTGGAATCCCTATGCTCTTGTTTTTTTTTCCAGAATTATCATGATCCTCTTCAACGAACGTCTCTCTATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8476</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>298187</contig_pos>
        <strand>+</strand>
        <context>CATCAACTTT[G/T]CAGTAACAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGCCAATCGATTCATTGCCATGTTTTTACCTCTGCTTTATCATCAACTTT</left_flank>
        <right_flank>CAGTAACAAAATTACAATGGTATAATTTTGAATACCGCCGTAAAACCTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGTTTCAATCTGATATGCCTCTCCAGAGCAATCAATAACATTATTGTGCTTCTCTTCAATTTTTTGGTCCTTGAGTTCCCTATACTTTTACTGTAAGGCACTTTTACCGTAAAACCTGTAATAGAAGGGCATCAATTTTGAGCTGATTTTACTTGGCTCCTGTGCAAGATATCAAAGATTTGTCTACTGATAAAAGTTTCGTGATGTTGTGATAAAAAATTTATCAGTTGACAACTTTTCCGTACCTTTGGCGGGTACCGAGATAAATTGGCTCAACGCGACAAGTTAGGGAGTCGTTCTATTACAGGCCTAACGGTATTTTTGTCCGTTTCAAATAGAATATTGTTTCAGCTACAAAAATATTCTCCCAGCGAAAATCGAAACTTTCATAATTTTCATAACAGTCAATTTATATATGGTCAATGAATTCCAAACTGTACTCATCGCAGCCAATCGATTCATTGCCATGTTTTTACCTCTGCTTTATCATCAACTTTGCAGTAACAAAATTACAATGGTATAATTTTGAATACCGCCGTAAAACCTTTAATACAAGGGCCCCATACTGTCAACTTTGAGCTTAATTATCTCGCTTCCTATGATAACTGATAAAATATTGGTTATATTATGTTTAATATATTATCACTTCACCGCTTTTTGATATCTCTCAAAAGAGTTGCAATAACTGAGCTTGAAGTTATAAGCTAGGGGCCTTTCTATCACAGGTTTTACGGTAATTGACTCTCGAAGAGTTTTGTGATTTTCAGGTTCTTCTGGGAGCACTTTACCTTGAGAGAGGATATGCGAGCATTTCAAAAATTTTAGAGCGTTTTGGTAGATGTAAACAGAAAAACTTAAATAATGTAAAAGTTTCAGCCGCCGACTGTGTCTTATTCTGGGATAGTTCCATTCTATCGACCGAATTCAATGATCCGATTTGTTGGGAAAAATTTCCACCTGGGTTTGACGGATTATTAATTATTATTGTTCCATTGGTA</canonical>
            <polymorphic>CCAGTTTCAATCTGATATGCCTCTCCAGAGCAATCAATAACATTATTGTGCTTCTCTTCAATTTTTTGGTCCTTGAGTTCCCTATACTTTTACTGTAAGGCACTTTTACCGTAAAACCTGTAATAGAAGGGCATCAATTTTGAGCTGATTTTACTTGGCTCCTGTGCAAGATATCAAAGATTTGTCTACTGATAAAAGTTTCGTGATGTTGTGATAAAAAATTTATCAGTTGACAACTTTTCCGTACCTTTGGCGGGTACCGAGATAAATTGGCTCAACGCGACAAGTTAGGGAGTCGTTCTATTACAGGCCTAACGGTATTTTTGTCCGTTTCAAATAGAATATTGTTTCAGCTACAAAAATATTCTCCCAGCGAAAATCGAAACTTTCATAATTTTCATAACAGTCAATTTATATATGGTCAATGAATTCCAAACTGTACTCATCGCAGCCAATCGATTCATTGCCATGTTTTTACCTCTGCTTTATCATCAACTTTKCAGTAACAAAATTACAATGGTATAATTTTGAATACCGCCGTAAAACCTTTAATACAAGGGCCCCATACTGTCAACTTTGAGCTTAATTATCTCGCTTCCTATGATAACTGATAAAATATTGGTTATATTATGTTTAATATATTATCACTTCACCGCTTTTTGATATCTCTCAAAAGAGTTGCAATAACTGAGCTTGAAGTTATAAGCTAGGGGCCTTTCTATCACAGGTTTTACGGTAATTGACTCTCGAAGAGTTTTGTGATTTTCAGGTTCTTCTGGGAGCACTTTACCTTGAGAGAGGATATGCGAGCATTTCAAAAATTTTAGAGCGTTTTGGTAGATGTAAACAGAAAAACTTAAATAATGTAAAAGTTTCAGCCGCCGACTGTGTCTTATTCTGGGATAGTTCCATTCTATCGACCGAATTCAATGATCCGATTTGTTGGGAAAAATTTCCACCTGGGTTTGACGGATTATTAATTATTATTGTTCCATTGGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>334 319 181 166</canonical_bands>
                <polymorphic_bands>515 319 166</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAATTCCAAACTGTACTCATC</pcr_primer_p1>
		<pcr_primer_p2>CCTGAAAATCACAAAACTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>346</pcr_amplicon_size>
		<canonical_amplicon>ATGAATTCCAAACTGTACTCATCGCAGCCAATCGATTCATTGCCATGTTTTTACCTCTGCTTTATCATCAACTTTGCAGTAACAAAATTACAATGGTATAATTTTGAATACCGCCGTAAAACCTTTAATACAAGGGCCCCATACTGTCAACTTTGAGCTTAATTATCTCGCTTCCTATGATAACTGATAAAATATTGGTTATATTATGTTTAATATATTATCACTTCACCGCTTTTTGATATCTCTCAAAAGAGTTGCAATAACTGAGCTTGAAGTTATAAGCTAGGGGCCTTTCTATCACAGGTTTTACGGTAATTGACTCTCGAAGAGTTTTGTGATTTTCAGG</canonical_amplicon>
		<polymorphic_amplicon>ATGAATTCCAAACTGTACTCATCGCAGCCAATCGATTCATTGCCATGTTTTTACCTCTGCTTTATCATCAACTTTKCAGTAACAAAATTACAATGGTATAATTTTGAATACCGCCGTAAAACCTTTAATACAAGGGCCCCATACTGTCAACTTTGAGCTTAATTATCTCGCTTCCTATGATAACTGATAAAATATTGGTTATATTATGTTTAATATATTATCACTTCACCGCTTTTTGATATCTCTCAAAAGAGTTGCAATAACTGAGCTTGAAGTTATAAGCTAGGGGCCTTTCTATCACAGGTTTTACGGTAATTGACTCTCGAAGAGTTTTGTGATTTTCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8477</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>355653</contig_pos>
        <strand>+</strand>
        <context>AAATCAAATC[A/G]AGTACATGCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCTATTTTTGGGTTCTCTTTCTGTTCTTTGAAGACGACGAAATCAAATC</left_flank>
        <right_flank>AGTACATGCTTGTTTCGTCGCGTCTCAATGTGTCATCAGTGAGACTGAGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAATCGGAAAACCCGACAGACAGCCAACAGGAAATTTCTCAATCCACGTGTCATATTAGTCGAAGAAGTACGAAAAATTCTAGAATTCGCCCTACTTATTGTTTCAGTGGGACCCCAAGATTGTTATGTCACATTATTATATCAACAACACAATTTTATTTTTGACCTGTTCTATTTTAGGCCCACCCTCTCTATTCTTTTGATATTTTGATACCTATTTTCAGACCAATTGTGTTGGAAACAAAAATTCTACGTCATCGCCAGATGAATGTGTTCTTTCAAATACCATTTTTGCCACAGATCGGGGTCGCTGCCGAGTGACCCGATCAACTGGTATGTACTGTTGTGTACACATAGTCTCCAGATGAGTTTTTCTGGTTCTAACAGAGAGTTTTTGCACCTTTGAACTAGGTGCCATCTCTAACAAAGATCAAAGTCACTTCCGATTCTCTATTTTTGGGTTCTCTTTCTGTTCTTTGAAGACGACGAAATCAAATCGAGTACATGCTTGTTTCGTCGCGTCTCAATGTGTCATCAGTGAGACTGAGAGAGTGTATGGGATGAGGAGACGCAGAGAGTGACTTCCGTTGATTTCGAAAAAAAACGAGAGGAGATTACTTTGATTGATATAGGAAGGAACATGGTGGTGTAAAAGGAATCAAGGACATAGCCGCCTGGGGGAATACCTTTTTTTGAAAAATAGCAACAAAACATTTTTTTATCATTTTGATCTAAAAAAATCGGAGCTGTGGAAGAGATTTTCCGATTTTTTCCAGTTTTGTGGATTTTTTGAATTCAGAACTTTTCAAAAATGTGAGAATTTGAATTTTTAAAACTTTCGGAAAAATTAAAATTTCTCGGAATTTTTTGAAAATTGTTACGGGTTTTTTCGAAAAATTAGAAATATTGATATTACACTTTTTTGGGATTTTTCGAAATTTTGAGACTTTGGAATTTTAAAATTTTCGGGAAAATTCGAATTTCTCGGAATTTTAAAGA</canonical>
            <polymorphic>ACAATCGGAAAACCCGACAGACAGCCAACAGGAAATTTCTCAATCCACGTGTCATATTAGTCGAAGAAGTACGAAAAATTCTAGAATTCGCCCTACTTATTGTTTCAGTGGGACCCCAAGATTGTTATGTCACATTATTATATCAACAACACAATTTTATTTTTGACCTGTTCTATTTTAGGCCCACCCTCTCTATTCTTTTGATATTTTGATACCTATTTTCAGACCAATTGTGTTGGAAACAAAAATTCTACGTCATCGCCAGATGAATGTGTTCTTTCAAATACCATTTTTGCCACAGATCGGGGTCGCTGCCGAGTGACCCGATCAACTGGTATGTACTGTTGTGTACACATAGTCTCCAGATGAGTTTTTCTGGTTCTAACAGAGAGTTTTTGCACCTTTGAACTAGGTGCCATCTCTAACAAAGATCAAAGTCACTTCCGATTCTCTATTTTTGGGTTCTCTTTCTGTTCTTTGAAGACGACGAAATCAAATCRAGTACATGCTTGTTTCGTCGCGTCTCAATGTGTCATCAGTGAGACTGAGAGAGTGTATGGGATGAGGAGACGCAGAGAGTGACTTCCGTTGATTTCGAAAAAAAACGAGAGGAGATTACTTTGATTGATATAGGAAGGAACATGGTGGTGTAAAAGGAATCAAGGACATAGCCGCCTGGGGGAATACCTTTTTTTGAAAAATAGCAACAAAACATTTTTTTATCATTTTGATCTAAAAAAATCGGAGCTGTGGAAGAGATTTTCCGATTTTTTCCAGTTTTGTGGATTTTTTGAATTCAGAACTTTTCAAAAATGTGAGAATTTGAATTTTTAAAACTTTCGGAAAAATTAAAATTTCTCGGAATTTTTTGAAAATTGTTACGGGTTTTTTCGAAAAATTAGAAATATTGATATTACACTTTTTTGGGATTTTTCGAAATTTTGAGACTTTGGAATTTTAAAATTTTCGGGAAAATTCGAATTTCTCGGAATTTTAAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>437 296 97 62 43 43 22</canonical_bands>
                <polymorphic_bands>534 296 62 43 43 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGGTTCTAACAGAGAGTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTAATCTCCTCTCGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTGGTTCTAACAGAGAGTTTTTGCACCTTTGAACTAGGTGCCATCTCTAACAAAGATCAAAGTCACTTCCGATTCTCTATTTTTGGGTTCTCTTTCTGTTCTTTGAAGACGACGAAATCAAATCGAGTACATGCTTGTTTCGTCGCGTCTCAATGTGTCATCAGTGAGACTGAGAGAGTGTATGGGATGAGGAGACGCAGAGAGTGACTTCCGTTGATTTCGAAAAAAAACGAGAGGAGATTACTTTG</canonical_amplicon>
		<polymorphic_amplicon>CTGGTTCTAACAGAGAGTTTTTGCACCTTTGAACTAGGTGCCATCTCTAACAAAGATCAAAGTCACTTCCGATTCTCTATTTTTGGGTTCTCTTTCTGTTCTTTGAAGACGACGAAATCAAATCRAGTACATGCTTGTTTCGTCGCGTCTCAATGTGTCATCAGTGAGACTGAGAGAGTGTATGGGATGAGGAGACGCAGAGAGTGACTTCCGTTGATTTCGAAAAAAAACGAGAGGAGATTACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8478</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>355603</contig_pos>
        <strand>+</strand>
        <context>ACTTCCGATT[C/T]TCTATTTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCTTTGAACTAGGTGCCATCTCTAACAAAGATCAAAGTCACTTCCGATT</left_flank>
        <right_flank>TCTATTTTTGGGTTCTCTTTCTGTTCTTTGAAGACGACGAAATCAAATCG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGACCGCTTTCCATCGCTGTGTCTTGAAAGATACAAAAACGATATTCGGACAATCGGAAAACCCGACAGACAGCCAACAGGAAATTTCTCAATCCACGTGTCATATTAGTCGAAGAAGTACGAAAAATTCTAGAATTCGCCCTACTTATTGTTTCAGTGGGACCCCAAGATTGTTATGTCACATTATTATATCAACAACACAATTTTATTTTTGACCTGTTCTATTTTAGGCCCACCCTCTCTATTCTTTTGATATTTTGATACCTATTTTCAGACCAATTGTGTTGGAAACAAAAATTCTACGTCATCGCCAGATGAATGTGTTCTTTCAAATACCATTTTTGCCACAGATCGGGGTCGCTGCCGAGTGACCCGATCAACTGGTATGTACTGTTGTGTACACATAGTCTCCAGATGAGTTTTTCTGGTTCTAACAGAGAGTTTTTGCACCTTTGAACTAGGTGCCATCTCTAACAAAGATCAAAGTCACTTCCGATTCTCTATTTTTGGGTTCTCTTTCTGTTCTTTGAAGACGACGAAATCAAATCGAGTACATGCTTGTTTCGTCGCGTCTCAATGTGTCATCAGTGAGACTGAGAGAGTGTATGGGATGAGGAGACGCAGAGAGTGACTTCCGTTGATTTCGAAAAAAAACGAGAGGAGATTACTTTGATTGATATAGGAAGGAACATGGTGGTGTAAAAGGAATCAAGGACATAGCCGCCTGGGGGAATACCTTTTTTTGAAAAATAGCAACAAAACATTTTTTTATCATTTTGATCTAAAAAAATCGGAGCTGTGGAAGAGATTTTCCGATTTTTTCCAGTTTTGTGGATTTTTTGAATTCAGAACTTTTCAAAAATGTGAGAATTTGAATTTTTAAAACTTTCGGAAAAATTAAAATTTCTCGGAATTTTTTGAAAATTGTTACGGGTTTTTTCGAAAAATTAGAAATATTGATATTACACTTTTTTGGGATTTTTCGAAATTTTGAGACTT</canonical>
            <polymorphic>AGGACCGCTTTCCATCGCTGTGTCTTGAAAGATACAAAAACGATATTCGGACAATCGGAAAACCCGACAGACAGCCAACAGGAAATTTCTCAATCCACGTGTCATATTAGTCGAAGAAGTACGAAAAATTCTAGAATTCGCCCTACTTATTGTTTCAGTGGGACCCCAAGATTGTTATGTCACATTATTATATCAACAACACAATTTTATTTTTGACCTGTTCTATTTTAGGCCCACCCTCTCTATTCTTTTGATATTTTGATACCTATTTTCAGACCAATTGTGTTGGAAACAAAAATTCTACGTCATCGCCAGATGAATGTGTTCTTTCAAATACCATTTTTGCCACAGATCGGGGTCGCTGCCGAGTGACCCGATCAACTGGTATGTACTGTTGTGTACACATAGTCTCCAGATGAGTTTTTCTGGTTCTAACAGAGAGTTTTTGCACCTTTGAACTAGGTGCCATCTCTAACAAAGATCAAAGTCACTTCCGATTYTCTATTTTTGGGTTCTCTTTCTGTTCTTTGAAGACGACGAAATCAAATCGAGTACATGCTTGTTTCGTCGCGTCTCAATGTGTCATCAGTGAGACTGAGAGAGTGTATGGGATGAGGAGACGCAGAGAGTGACTTCCGTTGATTTCGAAAAAAAACGAGAGGAGATTACTTTGATTGATATAGGAAGGAACATGGTGGTGTAAAAGGAATCAAGGACATAGCCGCCTGGGGGAATACCTTTTTTTGAAAAATAGCAACAAAACATTTTTTTATCATTTTGATCTAAAAAAATCGGAGCTGTGGAAGAGATTTTCCGATTTTTTCCAGTTTTGTGGATTTTTTGAATTCAGAACTTTTCAAAAATGTGAGAATTTGAATTTTTAAAACTTTCGGAAAAATTAAAATTTCTCGGAATTTTTTGAAAATTGTTACGGGTTTTTTCGAAAAATTAGAAATATTGATATTACACTTTTTTGGGATTTTTCGAAATTTTGAGACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>496 293 211</canonical_bands>
                <polymorphic_bands>707 293</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>496 293 211</canonical_bands>
                <polymorphic_bands>707 293</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGGTTCTAACAGAGAGTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTAATCTCCTCTCGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTGGTTCTAACAGAGAGTTTTTGCACCTTTGAACTAGGTGCCATCTCTAACAAAGATCAAAGTCACTTCCGATTCTCTATTTTTGGGTTCTCTTTCTGTTCTTTGAAGACGACGAAATCAAATCGAGTACATGCTTGTTTCGTCGCGTCTCAATGTGTCATCAGTGAGACTGAGAGAGTGTATGGGATGAGGAGACGCAGAGAGTGACTTCCGTTGATTTCGAAAAAAAACGAGAGGAGATTACTTTG</canonical_amplicon>
		<polymorphic_amplicon>CTGGTTCTAACAGAGAGTTTTTGCACCTTTGAACTAGGTGCCATCTCTAACAAAGATCAAAGTCACTTCCGATTYTCTATTTTTGGGTTCTCTTTCTGTTCTTTGAAGACGACGAAATCAAATCGAGTACATGCTTGTTTCGTCGCGTCTCAATGTGTCATCAGTGAGACTGAGAGAGTGTATGGGATGAGGAGACGCAGAGAGTGACTTCCGTTGATTTCGAAAAAAAACGAGAGGAGATTACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8479</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>355560</contig_pos>
        <strand>+</strand>
        <context>TGCACCTTTG[A/C]ACTAGGTGCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTCTCCAGATGAGTTTTTCTGGTTCTAACAGAGAGTTTTTGCACCTTTG</left_flank>
        <right_flank>ACTAGGTGCCATCTCTAACAAAGATCAAAGTCACTTCCGATTCTCTATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTAGTTGGTCCGAAAATATTGATTCTGAAAGGAAGTATGGCAAGGACCGCTTTCCATCGCTGTGTCTTGAAAGATACAAAAACGATATTCGGACAATCGGAAAACCCGACAGACAGCCAACAGGAAATTTCTCAATCCACGTGTCATATTAGTCGAAGAAGTACGAAAAATTCTAGAATTCGCCCTACTTATTGTTTCAGTGGGACCCCAAGATTGTTATGTCACATTATTATATCAACAACACAATTTTATTTTTGACCTGTTCTATTTTAGGCCCACCCTCTCTATTCTTTTGATATTTTGATACCTATTTTCAGACCAATTGTGTTGGAAACAAAAATTCTACGTCATCGCCAGATGAATGTGTTCTTTCAAATACCATTTTTGCCACAGATCGGGGTCGCTGCCGAGTGACCCGATCAACTGGTATGTACTGTTGTGTACACATAGTCTCCAGATGAGTTTTTCTGGTTCTAACAGAGAGTTTTTGCACCTTTGAACTAGGTGCCATCTCTAACAAAGATCAAAGTCACTTCCGATTCTCTATTTTTGGGTTCTCTTTCTGTTCTTTGAAGACGACGAAATCAAATCGAGTACATGCTTGTTTCGTCGCGTCTCAATGTGTCATCAGTGAGACTGAGAGAGTGTATGGGATGAGGAGACGCAGAGAGTGACTTCCGTTGATTTCGAAAAAAAACGAGAGGAGATTACTTTGATTGATATAGGAAGGAACATGGTGGTGTAAAAGGAATCAAGGACATAGCCGCCTGGGGGAATACCTTTTTTTGAAAAATAGCAACAAAACATTTTTTTATCATTTTGATCTAAAAAAATCGGAGCTGTGGAAGAGATTTTCCGATTTTTTCCAGTTTTGTGGATTTTTTGAATTCAGAACTTTTCAAAAATGTGAGAATTTGAATTTTTAAAACTTTCGGAAAAATTAAAATTTCTCGGAATTTTTTGAAAATTGTTACGGGTTTTTTCGAAAAATTAGAAATA</canonical>
            <polymorphic>CTTAGTTGGTCCGAAAATATTGATTCTGAAAGGAAGTATGGCAAGGACCGCTTTCCATCGCTGTGTCTTGAAAGATACAAAAACGATATTCGGACAATCGGAAAACCCGACAGACAGCCAACAGGAAATTTCTCAATCCACGTGTCATATTAGTCGAAGAAGTACGAAAAATTCTAGAATTCGCCCTACTTATTGTTTCAGTGGGACCCCAAGATTGTTATGTCACATTATTATATCAACAACACAATTTTATTTTTGACCTGTTCTATTTTAGGCCCACCCTCTCTATTCTTTTGATATTTTGATACCTATTTTCAGACCAATTGTGTTGGAAACAAAAATTCTACGTCATCGCCAGATGAATGTGTTCTTTCAAATACCATTTTTGCCACAGATCGGGGTCGCTGCCGAGTGACCCGATCAACTGGTATGTACTGTTGTGTACACATAGTCTCCAGATGAGTTTTTCTGGTTCTAACAGAGAGTTTTTGCACCTTTGMACTAGGTGCCATCTCTAACAAAGATCAAAGTCACTTCCGATTCTCTATTTTTGGGTTCTCTTTCTGTTCTTTGAAGACGACGAAATCAAATCGAGTACATGCTTGTTTCGTCGCGTCTCAATGTGTCATCAGTGAGACTGAGAGAGTGTATGGGATGAGGAGACGCAGAGAGTGACTTCCGTTGATTTCGAAAAAAAACGAGAGGAGATTACTTTGATTGATATAGGAAGGAACATGGTGGTGTAAAAGGAATCAAGGACATAGCCGCCTGGGGGAATACCTTTTTTTGAAAAATAGCAACAAAACATTTTTTTATCATTTTGATCTAAAAAAATCGGAGCTGTGGAAGAGATTTTCCGATTTTTTCCAGTTTTGTGGATTTTTTGAATTCAGAACTTTTCAAAAATGTGAGAATTTGAATTTTTAAAACTTTCGGAAAAATTAAAATTTCTCGGAATTTTTTGAAAATTGTTACGGGTTTTTTCGAAAAATTAGAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAACTGGTATGTACTGTTGTGT</pcr_primer_p1>
		<pcr_primer_p2>CCATACACTCTCTCAGTCTCACT</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>TCAACTGGTATGTACTGTTGTGTACACATAGTCTCCAGATGAGTTTTTCTGGTTCTAACAGAGAGTTTTTGCACCTTTGAACTAGGTGCCATCTCTAACAAAGATCAAAGTCACTTCCGATTCTCTATTTTTGGGTTCTCTTTCTGTTCTTTGAAGACGACGAAATCAAATCGAGTACATGCTTGTTTCGTCGCGTCTCAATGTGTCATCAGTGAGACTGAGAGAGTGTATGG</canonical_amplicon>
		<polymorphic_amplicon>TCAACTGGTATGTACTGTTGTGTACACATAGTCTCCAGATGAGTTTTTCTGGTTCTAACAGAGAGTTTTTGCACCTTTGMACTAGGTGCCATCTCTAACAAAGATCAAAGTCACTTCCGATTCTCTATTTTTGGGTTCTCTTTCTGTTCTTTGAAGACGACGAAATCAAATCGAGTACATGCTTGTTTCGTCGCGTCTCAATGTGTCATCAGTGAGACTGAGAGAGTGTATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8480</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>355510</contig_pos>
        <strand>+</strand>
        <context>GTGTACACAT[A/G]GTCTCCAGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTCGCTGCCGAGTGACCCGATCAACTGGTATGTACTGTTGTGTACACAT</left_flank>
        <right_flank>GTCTCCAGATGAGTTTTTCTGGTTCTAACAGAGAGTTTTTGCACCTTTGA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCCAAATAGTATAATTTTGTAGCTCTCGTTGAGTTCTATCATATCCATCTTAGTTGGTCCGAAAATATTGATTCTGAAAGGAAGTATGGCAAGGACCGCTTTCCATCGCTGTGTCTTGAAAGATACAAAAACGATATTCGGACAATCGGAAAACCCGACAGACAGCCAACAGGAAATTTCTCAATCCACGTGTCATATTAGTCGAAGAAGTACGAAAAATTCTAGAATTCGCCCTACTTATTGTTTCAGTGGGACCCCAAGATTGTTATGTCACATTATTATATCAACAACACAATTTTATTTTTGACCTGTTCTATTTTAGGCCCACCCTCTCTATTCTTTTGATATTTTGATACCTATTTTCAGACCAATTGTGTTGGAAACAAAAATTCTACGTCATCGCCAGATGAATGTGTTCTTTCAAATACCATTTTTGCCACAGATCGGGGTCGCTGCCGAGTGACCCGATCAACTGGTATGTACTGTTGTGTACACATAGTCTCCAGATGAGTTTTTCTGGTTCTAACAGAGAGTTTTTGCACCTTTGAACTAGGTGCCATCTCTAACAAAGATCAAAGTCACTTCCGATTCTCTATTTTTGGGTTCTCTTTCTGTTCTTTGAAGACGACGAAATCAAATCGAGTACATGCTTGTTTCGTCGCGTCTCAATGTGTCATCAGTGAGACTGAGAGAGTGTATGGGATGAGGAGACGCAGAGAGTGACTTCCGTTGATTTCGAAAAAAAACGAGAGGAGATTACTTTGATTGATATAGGAAGGAACATGGTGGTGTAAAAGGAATCAAGGACATAGCCGCCTGGGGGAATACCTTTTTTTGAAAAATAGCAACAAAACATTTTTTTATCATTTTGATCTAAAAAAATCGGAGCTGTGGAAGAGATTTTCCGATTTTTTCCAGTTTTGTGGATTTTTTGAATTCAGAACTTTTCAAAAATGTGAGAATTTGAATTTTTAAAACTTTCGGAAAAATTAAAATTT</canonical>
            <polymorphic>ATTCCAAATAGTATAATTTTGTAGCTCTCGTTGAGTTCTATCATATCCATCTTAGTTGGTCCGAAAATATTGATTCTGAAAGGAAGTATGGCAAGGACCGCTTTCCATCGCTGTGTCTTGAAAGATACAAAAACGATATTCGGACAATCGGAAAACCCGACAGACAGCCAACAGGAAATTTCTCAATCCACGTGTCATATTAGTCGAAGAAGTACGAAAAATTCTAGAATTCGCCCTACTTATTGTTTCAGTGGGACCCCAAGATTGTTATGTCACATTATTATATCAACAACACAATTTTATTTTTGACCTGTTCTATTTTAGGCCCACCCTCTCTATTCTTTTGATATTTTGATACCTATTTTCAGACCAATTGTGTTGGAAACAAAAATTCTACGTCATCGCCAGATGAATGTGTTCTTTCAAATACCATTTTTGCCACAGATCGGGGTCGCTGCCGAGTGACCCGATCAACTGGTATGTACTGTTGTGTACACATRGTCTCCAGATGAGTTTTTCTGGTTCTAACAGAGAGTTTTTGCACCTTTGAACTAGGTGCCATCTCTAACAAAGATCAAAGTCACTTCCGATTCTCTATTTTTGGGTTCTCTTTCTGTTCTTTGAAGACGACGAAATCAAATCGAGTACATGCTTGTTTCGTCGCGTCTCAATGTGTCATCAGTGAGACTGAGAGAGTGTATGGGATGAGGAGACGCAGAGAGTGACTTCCGTTGATTTCGAAAAAAAACGAGAGGAGATTACTTTGATTGATATAGGAAGGAACATGGTGGTGTAAAAGGAATCAAGGACATAGCCGCCTGGGGGAATACCTTTTTTTGAAAAATAGCAACAAAACATTTTTTTATCATTTTGATCTAAAAAAATCGGAGCTGTGGAAGAGATTTTCCGATTTTTTCCAGTTTTGTGGATTTTTTGAATTCAGAACTTTTCAAAAATGTGAGAATTTGAATTTTTAAAACTTTCGGAAAAATTAAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCCTCTCTATTCTTTTGATATT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTTAGAGATGGCACCTAGT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACCCTCTCTATTCTTTTGATATTTTGATACCTATTTTCAGACCAATTGTGTTGGAAACAAAAATTCTACGTCATCGCCAGATGAATGTGTTCTTTCAAATACCATTTTTGCCACAGATCGGGGTCGCTGCCGAGTGACCCGATCAACTGGTATGTACTGTTGTGTACACATAGTCTCCAGATGAGTTTTTCTGGTTCTAACAGAGAGTTTTTGCACCTTTGAACTAGGTGCCATCTCTAACAAA</canonical_amplicon>
		<polymorphic_amplicon>CACCCTCTCTATTCTTTTGATATTTTGATACCTATTTTCAGACCAATTGTGTTGGAAACAAAAATTCTACGTCATCGCCAGATGAATGTGTTCTTTCAAATACCATTTTTGCCACAGATCGGGGTCGCTGCCGAGTGACCCGATCAACTGGTATGTACTGTTGTGTACACATRGTCTCCAGATGAGTTTTTCTGGTTCTAACAGAGAGTTTTTGCACCTTTGAACTAGGTGCCATCTCTAACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8481</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>355380</contig_pos>
        <strand>+</strand>
        <context>TATTTTCAGA[C/T]CAATTGTGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTAGGCCCACCCTCTCTATTCTTTTGATATTTTGATACCTATTTTCAGA</left_flank>
        <right_flank>CAATTGTGTTGGAAACAAAAATTCTACGTCATCGCCAGATGAATGTGTTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAGATGTTTTCTTCAGTGCCGGCTATCCTTTAAATGAATTTTCGGCCACAAGGTTCATCGGCGTCGGACAAGAATGATAGCTCAGATGGTTTTTGGCTTGTAACTTAGTTCTTAGACAAGATAAAGTATTCCAAATAGTATAATTTTGTAGCTCTCGTTGAGTTCTATCATATCCATCTTAGTTGGTCCGAAAATATTGATTCTGAAAGGAAGTATGGCAAGGACCGCTTTCCATCGCTGTGTCTTGAAAGATACAAAAACGATATTCGGACAATCGGAAAACCCGACAGACAGCCAACAGGAAATTTCTCAATCCACGTGTCATATTAGTCGAAGAAGTACGAAAAATTCTAGAATTCGCCCTACTTATTGTTTCAGTGGGACCCCAAGATTGTTATGTCACATTATTATATCAACAACACAATTTTATTTTTGACCTGTTCTATTTTAGGCCCACCCTCTCTATTCTTTTGATATTTTGATACCTATTTTCAGACCAATTGTGTTGGAAACAAAAATTCTACGTCATCGCCAGATGAATGTGTTCTTTCAAATACCATTTTTGCCACAGATCGGGGTCGCTGCCGAGTGACCCGATCAACTGGTATGTACTGTTGTGTACACATAGTCTCCAGATGAGTTTTTCTGGTTCTAACAGAGAGTTTTTGCACCTTTGAACTAGGTGCCATCTCTAACAAAGATCAAAGTCACTTCCGATTCTCTATTTTTGGGTTCTCTTTCTGTTCTTTGAAGACGACGAAATCAAATCGAGTACATGCTTGTTTCGTCGCGTCTCAATGTGTCATCAGTGAGACTGAGAGAGTGTATGGGATGAGGAGACGCAGAGAGTGACTTCCGTTGATTTCGAAAAAAAACGAGAGGAGATTACTTTGATTGATATAGGAAGGAACATGGTGGTGTAAAAGGAATCAAGGACATAGCCGCCTGGGGGAATACCTTTTTTTGAAAAATAGCAACAAAACATTTTTTTATCATT</canonical>
            <polymorphic>TTTCAGATGTTTTCTTCAGTGCCGGCTATCCTTTAAATGAATTTTCGGCCACAAGGTTCATCGGCGTCGGACAAGAATGATAGCTCAGATGGTTTTTGGCTTGTAACTTAGTTCTTAGACAAGATAAAGTATTCCAAATAGTATAATTTTGTAGCTCTCGTTGAGTTCTATCATATCCATCTTAGTTGGTCCGAAAATATTGATTCTGAAAGGAAGTATGGCAAGGACCGCTTTCCATCGCTGTGTCTTGAAAGATACAAAAACGATATTCGGACAATCGGAAAACCCGACAGACAGCCAACAGGAAATTTCTCAATCCACGTGTCATATTAGTCGAAGAAGTACGAAAAATTCTAGAATTCGCCCTACTTATTGTTTCAGTGGGACCCCAAGATTGTTATGTCACATTATTATATCAACAACACAATTTTATTTTTGACCTGTTCTATTTTAGGCCCACCCTCTCTATTCTTTTGATATTTTGATACCTATTTTCAGAYCAATTGTGTTGGAAACAAAAATTCTACGTCATCGCCAGATGAATGTGTTCTTTCAAATACCATTTTTGCCACAGATCGGGGTCGCTGCCGAGTGACCCGATCAACTGGTATGTACTGTTGTGTACACATAGTCTCCAGATGAGTTTTTCTGGTTCTAACAGAGAGTTTTTGCACCTTTGAACTAGGTGCCATCTCTAACAAAGATCAAAGTCACTTCCGATTCTCTATTTTTGGGTTCTCTTTCTGTTCTTTGAAGACGACGAAATCAAATCGAGTACATGCTTGTTTCGTCGCGTCTCAATGTGTCATCAGTGAGACTGAGAGAGTGTATGGGATGAGGAGACGCAGAGAGTGACTTCCGTTGATTTCGAAAAAAAACGAGAGGAGATTACTTTGATTGATATAGGAAGGAACATGGTGGTGTAAAAGGAATCAAGGACATAGCCGCCTGGGGGAATACCTTTTTTTGAAAAATAGCAACAAAACATTTTTTTATCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGTGTCATATTAGTCGAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>AAAATGGTATTTGAAAGAACACA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACGTGTCATATTAGTCGAAGAAGTACGAAAAATTCTAGAATTCGCCCTACTTATTGTTTCAGTGGGACCCCAAGATTGTTATGTCACATTATTATATCAACAACACAATTTTATTTTTGACCTGTTCTATTTTAGGCCCACCCTCTCTATTCTTTTGATATTTTGATACCTATTTTCAGACCAATTGTGTTGGAAACAAAAATTCTACGTCATCGCCAGATGAATGTGTTCTTTCAAATACCATTTT</canonical_amplicon>
		<polymorphic_amplicon>ACGTGTCATATTAGTCGAAGAAGTACGAAAAATTCTAGAATTCGCCCTACTTATTGTTTCAGTGGGACCCCAAGATTGTTATGTCACATTATTATATCAACAACACAATTTTATTTTTGACCTGTTCTATTTTAGGCCCACCCTCTCTATTCTTTTGATATTTTGATACCTATTTTCAGAYCAATTGTGTTGGAAACAAAAATTCTACGTCATCGCCAGATGAATGTGTTCTTTCAAATACCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8482</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>363714</contig_pos>
        <strand>+</strand>
        <context>GGGAGTATTA[A/T]TTTTGAAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTATCGCGGGTCACTGAAATTGTGTTGAAATTTAGAATTTGGGAGTATTA</left_flank>
        <right_flank>TTTTGAAACTCACAGCGCCGAGCCTTGAGGCGGGATTATTCGATTCGGAA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCTATCGCCACGATACTTCTTTCGATCATCTCGAACCGAGCGCGCTGAGATAGCTAAAAATTATTTATTTATGAACCTAAATCGTTTATAGAGCTCTTTGAGCTGTTACCCTTGATAACCTGCACTTCTGGAGACGGCGATCTGCTTCTCGAGATATCCATGTCTCCACCAACGTGTTCTACAGCGAGTCTTGGCTGAAACAGCTTTAATTTAGGACTATTTTTCAGCCTAACTATCTTACGTTTCTCATCAGCGGTCGATGCCCATCAACGCGTCGCAAGTCTTCTCCCAATGGTCCTTTATCGAATCCACGTCTTCTCGAAGGATCCATGTTGTAGTTATTATAGGCTGATTCATAACCGTTGGCATATGATGCGACTTGCGGAGGAGCGTTGCCAAGAAGCGGTTGACGGATAGTGGGCGCCGGAAGTATGCGAGCACTTCTCTCGTATCGCGGGTCACTGAAATTGTGTTGAAATTTAGAATTTGGGAGTATTAATTTTGAAACTCACAGCGCCGAGCCTTGAGGCGGGATTATTCGATTCGGAACTTGGTCGTAATCTGCTCTTCTCATTATTATTATTATTATGTGTCTGAAAATAGGAGAATTCAGTAAGAGATAGAAAGAGGAAAAGCTGCAGAAAAGGGAAATCGATAAAAGTACATGACGAAAGGCGTGCTTCGAAGATTTCTCATGCGAAGCAGCGCTGCTAGAAGGTGGAAAACGCCAATTCTAAAAGCAAAATTCGTATTTATGCGACAATGATTAAAAAAATCAGTTTTAGCACAATTTTCGAAAGAATTTGACTCTTAAAATATGCTAGATATTTTCCTCAATTTATATTCATTATTTCAAATCAAAATCCAGAGCGAAAAAGATGCATTTCTATTGATTTTCATGCATTTTTTGGTTTGTGCGCGCAAAGAAATTCTGGCTGCAGAACCCCTATTTCTCTCGCACCCTCCTTGTTTCGCATTGACACTCGCCTCGTAAACAAA</canonical>
            <polymorphic>TGCTATCGCCACGATACTTCTTTCGATCATCTCGAACCGAGCGCGCTGAGATAGCTAAAAATTATTTATTTATGAACCTAAATCGTTTATAGAGCTCTTTGAGCTGTTACCCTTGATAACCTGCACTTCTGGAGACGGCGATCTGCTTCTCGAGATATCCATGTCTCCACCAACGTGTTCTACAGCGAGTCTTGGCTGAAACAGCTTTAATTTAGGACTATTTTTCAGCCTAACTATCTTACGTTTCTCATCAGCGGTCGATGCCCATCAACGCGTCGCAAGTCTTCTCCCAATGGTCCTTTATCGAATCCACGTCTTCTCGAAGGATCCATGTTGTAGTTATTATAGGCTGATTCATAACCGTTGGCATATGATGCGACTTGCGGAGGAGCGTTGCCAAGAAGCGGTTGACGGATAGTGGGCGCCGGAAGTATGCGAGCACTTCTCTCGTATCGCGGGTCACTGAAATTGTGTTGAAATTTAGAATTTGGGAGTATTAWTTTTGAAACTCACAGCGCCGAGCCTTGAGGCGGGATTATTCGATTCGGAACTTGGTCGTAATCTGCTCTTCTCATTATTATTATTATTATGTGTCTGAAAATAGGAGAATTCAGTAAGAGATAGAAAGAGGAAAAGCTGCAGAAAAGGGAAATCGATAAAAGTACATGACGAAAGGCGTGCTTCGAAGATTTCTCATGCGAAGCAGCGCTGCTAGAAGGTGGAAAACGCCAATTCTAAAAGCAAAATTCGTATTTATGCGACAATGATTAAAAAAATCAGTTTTAGCACAATTTTCGAAAGAATTTGACTCTTAAAATATGCTAGATATTTTCCTCAATTTATATTCATTATTTCAAATCAAAATCCAGAGCGAAAAAGATGCATTTCTATTGATTTTCATGCATTTTTTGGTTTGTGCGCGCAAAGAAATTCTGGCTGCAGAACCCCTATTTCTCTCGCACCCTCCTTGTTTCGCATTGACACTCGCCTCGTAAACAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>290 271 207 188 44</canonical_bands>
                <polymorphic_bands>561 207 188 44</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>258 149 123 109 92 72 59 45 35 14 14 12 11 7</canonical_bands>
                <polymorphic_bands>258 149 123 123 92 72 59 45 35 14 12 11 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGTTGTAGTTATTATAGGCTGATT</pcr_primer_p1>
		<pcr_primer_p2>ATAATGAGAAGAGCAGATTACGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATGTTGTAGTTATTATAGGCTGATTCATAACCGTTGGCATATGATGCGACTTGCGGAGGAGCGTTGCCAAGAAGCGGTTGACGGATAGTGGGCGCCGGAAGTATGCGAGCACTTCTCTCGTATCGCGGGTCACTGAAATTGTGTTGAAATTTAGAATTTGGGAGTATTAATTTTGAAACTCACAGCGCCGAGCCTTGAGGCGGGATTATTCGATTCGGAACTTGGTCGTAATCTGCTCTTCTCATTAT</canonical_amplicon>
		<polymorphic_amplicon>CATGTTGTAGTTATTATAGGCTGATTCATAACCGTTGGCATATGATGCGACTTGCGGAGGAGCGTTGCCAAGAAGCGGTTGACGGATAGTGGGCGCCGGAAGTATGCGAGCACTTCTCTCGTATCGCGGGTCACTGAAATTGTGTTGAAATTTAGAATTTGGGAGTATTAWTTTTGAAACTCACAGCGCCGAGCCTTGAGGCGGGATTATTCGATTCGGAACTTGGTCGTAATCTGCTCTTCTCATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8510</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>30412</contig_pos>
        <strand>+</strand>
        <context>TCTTCAAAAA[C/T]CCCATCGATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTAACATTACCAATCTGAATCGCCGTTTCCAACTGCTTCTTCAAAAA</left_flank>
        <right_flank>CCCATCGATTGCTCATACTTTTCTAAACTACAGTATGCCGATGCAAGTGA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTATGGTAGTTACAGTAATCTTCTTGTTACAGAAATTGATTTTTCGATTTTCGAACATTTTTGGGGTTACTGTAGGTACAGTGATCTTCCAATTTGATTCAATTTGGTTACCGTAGGTCTTCATTTTACACTAACACTGGCCAAACTTGGATTACTGTATTTTCCCTAAATAGGGGAATACTGTAGCTTCTCCGAAATTTAAAAACTTCGATTTTTCAAGGTTTTGAGTTACTATACTTTTTAGGGATTACTGTAGCTTTTTTTAAAAAATTGTGAAATTTCAATTTTTCGGATTACCGTACCCGATAAATCCTTTCCAAATGCCTCCTCTGCTCAATCGCCACGTGGAAATCGTCCAAAATTTCAGCAATTTCAGCCAAATTCTCGCGAATTTCCGCGATTTTTGGGGATTCTAAAATTCCAAATTTTTGAAAAAAAAATCTATTTTTTTAACATTACCAATCTGAATCGCCGTTTCCAACTGCTTCTTCAAAAACCCCATCGATTGCTCATACTTTTCTAAACTACAGTATGCCGATGCAAGTGATCCATATACTGATTCCAGCAGTTTGATTGATTTCAAATCAAGGTCCAAGGAGAATTGCAGGATTGTTAGGAAACTGAATTTTTAAAGAATTGTGGCGTTTCTTAAGACTCTTTTAAGACCTTTCCAGGCATTTTTAGGCCTTTTCTGGGCTTTTTAGGCCTCAGAATGGTCGAGAAAAGTCATTTTGGCTGTTTTAAGACACTTTAAGCCTAAAATAAGTCAAAAGTCATTTTCAGCAAGTTTTTGCCGTTTAAAAGGAATTTTAGGCTTAAATTAAGTCTAGAAAAGTCATTTTAGCTGTTCTGTAGATCGCTTAGAGGCATTTTGAGCCTAGAAAATGTCTGGAAAGGTCATTTCAGATGTTTTGGCGTTTTAAGGCATTTCAAGCCTAAAAGTAGCCAAAGAAAGTAATTTTTGGGCATTTTAGACCTAAAAAATTAAAAATTTACC</canonical>
            <polymorphic>TATTTATGGTAGTTACAGTAATCTTCTTGTTACAGAAATTGATTTTTCGATTTTCGAACATTTTTGGGGTTACTGTAGGTACAGTGATCTTCCAATTTGATTCAATTTGGTTACCGTAGGTCTTCATTTTACACTAACACTGGCCAAACTTGGATTACTGTATTTTCCCTAAATAGGGGAATACTGTAGCTTCTCCGAAATTTAAAAACTTCGATTTTTCAAGGTTTTGAGTTACTATACTTTTTAGGGATTACTGTAGCTTTTTTTAAAAAATTGTGAAATTTCAATTTTTCGGATTACCGTACCCGATAAATCCTTTCCAAATGCCTCCTCTGCTCAATCGCCACGTGGAAATCGTCCAAAATTTCAGCAATTTCAGCCAAATTCTCGCGAATTTCCGCGATTTTTGGGGATTCTAAAATTCCAAATTTTTGAAAAAAAAATCTATTTTTTTAACATTACCAATCTGAATCGCCGTTTCCAACTGCTTCTTCAAAAAYCCCATCGATTGCTCATACTTTTCTAAACTACAGTATGCCGATGCAAGTGATCCATATACTGATTCCAGCAGTTTGATTGATTTCAAATCAAGGTCCAAGGAGAATTGCAGGATTGTTAGGAAACTGAATTTTTAAAGAATTGTGGCGTTTCTTAAGACTCTTTTAAGACCTTTCCAGGCATTTTTAGGCCTTTTCTGGGCTTTTTAGGCCTCAGAATGGTCGAGAAAAGTCATTTTGGCTGTTTTAAGACACTTTAAGCCTAAAATAAGTCAAAAGTCATTTTCAGCAAGTTTTTGCCGTTTAAAAGGAATTTTAGGCTTAAATTAAGTCTAGAAAAGTCATTTTAGCTGTTCTGTAGATCGCTTAGAGGCATTTTGAGCCTAGAAAATGTCTGGAAAGGTCATTTCAGATGTTTTGGCGTTTTAAGGCATTTCAAGCCTAAAAGTAGCCAAAGAAAGTAATTTTTGGGCATTTTAGACCTAAAAAATTAAAAATTTACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGATAAATCCTTTCCAAAT</pcr_primer_p1>
		<pcr_primer_p2>GGAATCAGTATATGGATCACTTG</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>CCGATAAATCCTTTCCAAATGCCTCCTCTGCTCAATCGCCACGTGGAAATCGTCCAAAATTTCAGCAATTTCAGCCAAATTCTCGCGAATTTCCGCGATTTTTGGGGATTCTAAAATTCCAAATTTTTGAAAAAAAAATCTATTTTTTTAACATTACCAATCTGAATCGCCGTTTCCAACTGCTTCTTCAAAAACCCCATCGATTGCTCATACTTTTCTAAACTACAGTATGCCGATGCAAGTGATCCATATACTGATTCC</canonical_amplicon>
		<polymorphic_amplicon>CCGATAAATCCTTTCCAAATGCCTCCTCTGCTCAATCGCCACGTGGAAATCGTCCAAAATTTCAGCAATTTCAGCCAAATTCTCGCGAATTTCCGCGATTTTTGGGGATTCTAAAATTCCAAATTTTTGAAAAAAAAATCTATTTTTTTAACATTACCAATCTGAATCGCCGTTTCCAACTGCTTCTTCAAAAAYCCCATCGATTGCTCATACTTTTCTAAACTACAGTATGCCGATGCAAGTGATCCATATACTGATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8511</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>30799</contig_pos>
        <strand>+</strand>
        <context>GAGCCTAGAA[A/T]ATGTCTGGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTCATTTTAGCTGTTCTGTAGATCGCTTAGAGGCATTTTGAGCCTAGAA</left_flank>
        <right_flank>ATGTCTGGAAAGGTCATTTCAGATGTTTTGGCGTTTTAAGGCATTTCAAG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGCGAATTTCCGCGATTTTTGGGGATTCTAAAATTCCAAATTTTTGAAAAAAAAATCTATTTTTTTAACATTACCAATCTGAATCGCCGTTTCCAACTGCTTCTTCAAAAACCCCATCGATTGCTCATACTTTTCTAAACTACAGTATGCCGATGCAAGTGATCCATATACTGATTCCAGCAGTTTGATTGATTTCAAATCAAGGTCCAAGGAGAATTGCAGGATTGTTAGGAAACTGAATTTTTAAAGAATTGTGGCGTTTCTTAAGACTCTTTTAAGACCTTTCCAGGCATTTTTAGGCCTTTTCTGGGCTTTTTAGGCCTCAGAATGGTCGAGAAAAGTCATTTTGGCTGTTTTAAGACACTTTAAGCCTAAAATAAGTCAAAAGTCATTTTCAGCAAGTTTTTGCCGTTTAAAAGGAATTTTAGGCTTAAATTAAGTCTAGAAAAGTCATTTTAGCTGTTCTGTAGATCGCTTAGAGGCATTTTGAGCCTAGAAAATGTCTGGAAAGGTCATTTCAGATGTTTTGGCGTTTTAAGGCATTTCAAGCCTAAAAGTAGCCAAAGAAAGTAATTTTTGGGCATTTTAGACCTAAAAAATTAAAAATTTACCCTCAAAATTCGCTTTTCCATCTCTGGAATCCGCTAGAATCGTTTGTCCAAGTGTTGCCAGAATTGTTGGAACATCTTCATCCAATTTCAGCACTTTCAAATTTTCCCAAGGGAATTTGCACCCGTAAAATGAGAAAATCGCCTCTTTGAGACTTTTCAGAATTTGAAAATTCGTAGAATCCAGTCTGATTCCATTGGAATACGCTAGAATCGATTCGAGCACTCTTTCAGCGTGTTTCAGGGATTCACCTCTTCGATAGTGTGCTTTTGCCCATGTTGGACACAGCCTAACCGCGATTTCCGAGTGTTTTAAGGAATTTTCAGCCAAATTCATTTTCAGAAGAATCGCTGATAGGTTGGCATGTAGAATTCCGTTGTTGGGATTCGT</canonical>
            <polymorphic>TCGCGAATTTCCGCGATTTTTGGGGATTCTAAAATTCCAAATTTTTGAAAAAAAAATCTATTTTTTTAACATTACCAATCTGAATCGCCGTTTCCAACTGCTTCTTCAAAAACCCCATCGATTGCTCATACTTTTCTAAACTACAGTATGCCGATGCAAGTGATCCATATACTGATTCCAGCAGTTTGATTGATTTCAAATCAAGGTCCAAGGAGAATTGCAGGATTGTTAGGAAACTGAATTTTTAAAGAATTGTGGCGTTTCTTAAGACTCTTTTAAGACCTTTCCAGGCATTTTTAGGCCTTTTCTGGGCTTTTTAGGCCTCAGAATGGTCGAGAAAAGTCATTTTGGCTGTTTTAAGACACTTTAAGCCTAAAATAAGTCAAAAGTCATTTTCAGCAAGTTTTTGCCGTTTAAAAGGAATTTTAGGCTTAAATTAAGTCTAGAAAAGTCATTTTAGCTGTTCTGTAGATCGCTTAGAGGCATTTTGAGCCTAGAAWATGTCTGGAAAGGTCATTTCAGATGTTTTGGCGTTTTAAGGCATTTCAAGCCTAAAAGTAGCCAAAGAAAGTAATTTTTGGGCATTTTAGACCTAAAAAATTAAAAATTTACCCTCAAAATTCGCTTTTCCATCTCTGGAATCCGCTAGAATCGTTTGTCCAAGTGTTGCCAGAATTGTTGGAACATCTTCATCCAATTTCAGCACTTTCAAATTTTCCCAAGGGAATTTGCACCCGTAAAATGAGAAAATCGCCTCTTTGAGACTTTTCAGAATTTGAAAATTCGTAGAATCCAGTCTGATTCCATTGGAATACGCTAGAATCGATTCGAGCACTCTTTCAGCGTGTTTCAGGGATTCACCTCTTCGATAGTGTGCTTTTGCCCATGTTGGACACAGCCTAACCGCGATTTCCGAGTGTTTTAAGGAATTTTCAGCCAAATTCATTTTCAGAAGAATCGCTGATAGGTTGGCATGTAGAATTCCGTTGTTGGGATTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAGTCATTTTAGCTGTTCTG</pcr_primer_p1>
		<pcr_primer_p2>GCTGAAATTGGATGAAGATG</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>GAAAAGTCATTTTAGCTGTTCTGTAGATCGCTTAGAGGCATTTTGAGCCTAGAAAATGTCTGGAAAGGTCATTTCAGATGTTTTGGCGTTTTAAGGCATTTCAAGCCTAAAAGTAGCCAAAGAAAGTAATTTTTGGGCATTTTAGACCTAAAAAATTAAAAATTTACCCTCAAAATTCGCTTTTCCATCTCTGGAATCCGCTAGAATCGTTTGTCCAAGTGTTGCCAGAATTGTTGGAACATCTTCATCCAATTTCAGC</canonical_amplicon>
		<polymorphic_amplicon>GAAAAGTCATTTTAGCTGTTCTGTAGATCGCTTAGAGGCATTTTGAGCCTAGAAWATGTCTGGAAAGGTCATTTCAGATGTTTTGGCGTTTTAAGGCATTTCAAGCCTAAAAGTAGCCAAAGAAAGTAATTTTTGGGCATTTTAGACCTAAAAAATTAAAAATTTACCCTCAAAATTCGCTTTTCCATCTCTGGAATCCGCTAGAATCGTTTGTCCAAGTGTTGCCAGAATTGTTGGAACATCTTCATCCAATTTCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8512</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>71181</contig_pos>
        <strand></strand>
        <context>TCCATTTTTT[C/A]TAAAATACCR</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTT</left_flank>
        <right_flank>TAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAGAGGCGTTTTTTCAAGAATTTCAAAATTTTCAACAAAGTCGGTGATACTGTATTTTATATAATTTTGTAGCCCATAGAATTACCTACAATTCTATACAAAATTCATAAAAATCGGTTCAGAATGACAGCTTCAAATTTTTTGAGAATACACTTTTTTTCGAAAAAAAAATTTTTTCCAAAAATTTTCAAATTTCAAGATTTTCACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCATAACCATATTTGTTCAGAATCTACCATGCCTACTGTGAACTGGACATGTGTATGGAACGACACAAAAGCATACTGTACTCATGGTGGCCGTGTCGTATTATCGATTGGCTGGAACAGGACATTGTCCCCGGCCGTCTCGACAATCGATGCAGTTTCCCGTGGCGACGACTGACACGTGGCATCAATCGAGAAAGGGGCGGAGCCAATGGTGAAGCCGTTTCGAGTGACTCGTCGTCGACGACTTGTGACACGAATGCTACTACACATCATCATCAGAAACATGTTTCTATTGTGAGTTTTTTTTTAATTTC</canonical>
            <polymorphic>GTAGAGGCGTTTTTTCAAGAATTTCAAAATTTTCAACAAAGTCGGTGATACTGTATTTTATATAATTTTGTAGCCCATAGAATTACCTACAATTCTATACAAAATTCATAAAAATCGGTTCAGAATGACAGCTTCAAATTTTTTGAGAATACACTTTTTTTCGAAAAAAAAATTTTTTCCAAAAATTTTCAAATTTCAAGATTTTCACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTMTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCATAACCATATTTGTTCAGAATCTACCATGCCTACTGTGAACTGGACATGTGTATGGAACGACACAAAAGCATACTGTACTCATGGTGGCCGTGTCGTATTATCGATTGGCTGGAACAGGACATTGTCCCCGGCCGTCTCGACAATCGATGCAGTTTCCCGTGGCGACGACTGACACGTGGCATCAATCGAGAAAGGGGCGGAGCCAATGGTGAAGCCGTTTCGAGTGACTCGTCGTCGACGACTTGTGACACGAATGCTACTACACATCATCATCAGAAACATGTTTCTATTGTGAGTTTTTTTTTAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCAAAACTGCTGTTAGCATA</pcr_primer_p1>
		<pcr_primer_p2>TCATAAAATTTCCTTTATTTTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>411</pcr_amplicon_size>
		<canonical_amplicon>ACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGA</canonical_amplicon>
		<polymorphic_amplicon>ACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTMTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8513</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>71191</contig_pos>
        <strand></strand>
        <context>MTAAAATACC[A/G]AAAATTTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACC</left_flank>
        <right_flank>AAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCAAGAATTTCAAAATTTTCAACAAAGTCGGTGATACTGTATTTTATATAATTTTGTAGCCCATAGAATTACCTACAATTCTATACAAAATTCATAAAAATCGGTTCAGAATGACAGCTTCAAATTTTTTGAGAATACACTTTTTTTCGAAAAAAAAATTTTTTCCAAAAATTTTCAAATTTCAAGATTTTCACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCATAACCATATTTGTTCAGAATCTACCATGCCTACTGTGAACTGGACATGTGTATGGAACGACACAAAAGCATACTGTACTCATGGTGGCCGTGTCGTATTATCGATTGGCTGGAACAGGACATTGTCCCCGGCCGTCTCGACAATCGATGCAGTTTCCCGTGGCGACGACTGACACGTGGCATCAATCGAGAAAGGGGCGGAGCCAATGGTGAAGCCGTTTCGAGTGACTCGTCGTCGACGACTTGTGACACGAATGCTACTACACATCATCATCAGAAACATGTTTCTATTGTGAGTTTTTTTTTAATTTCAGCTTGAAAT</canonical>
            <polymorphic>TTTTTCAAGAATTTCAAAATTTTCAACAAAGTCGGTGATACTGTATTTTATATAATTTTGTAGCCCATAGAATTACCTACAATTCTATACAAAATTCATAAAAATCGGTTCAGAATGACAGCTTCAAATTTTTTGAGAATACACTTTTTTTCGAAAAAAAAATTTTTTCCAAAAATTTTCAAATTTCAAGATTTTCACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCRAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCATAACCATATTTGTTCAGAATCTACCATGCCTACTGTGAACTGGACATGTGTATGGAACGACACAAAAGCATACTGTACTCATGGTGGCCGTGTCGTATTATCGATTGGCTGGAACAGGACATTGTCCCCGGCCGTCTCGACAATCGATGCAGTTTCCCGTGGCGACGACTGACACGTGGCATCAATCGAGAAAGGGGCGGAGCCAATGGTGAAGCCGTTTCGAGTGACTCGTCGTCGACGACTTGTGACACGAATGCTACTACACATCATCATCAGAAACATGTTTCTATTGTGAGTTTTTTTTTAATTTCAGCTTGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCAAAACTGCTGTTAGCATA</pcr_primer_p1>
		<pcr_primer_p2>TCATAAAATTTCCTTTATTTTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>411</pcr_amplicon_size>
		<canonical_amplicon>ACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGA</canonical_amplicon>
		<polymorphic_amplicon>ACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCRAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8514</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>71245</contig_pos>
        <strand></strand>
        <context>ataacttgct[G/T]cattttYATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCT</left_flank>
        <right_flank>CATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTGTAGCCCATAGAATTACCTACAATTCTATACAAAATTCATAAAAATCGGTTCAGAATGACAGCTTCAAATTTTTTGAGAATACACTTTTTTTCGAAAAAAAAATTTTTTCCAAAAATTTTCAAATTTCAAGATTTTCACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCATAACCATATTTGTTCAGAATCTACCATGCCTACTGTGAACTGGACATGTGTATGGAACGACACAAAAGCATACTGTACTCATGGTGGCCGTGTCGTATTATCGATTGGCTGGAACAGGACATTGTCCCCGGCCGTCTCGACAATCGATGCAGTTTCCCGTGGCGACGACTGACACGTGGCATCAATCGAGAAAGGGGCGGAGCCAATGGTGAAGCCGTTTCGAGTGACTCGTCGTCGACGACTTGTGACACGAATGCTACTACACATCATCATCAGAAACATGTTTCTATTGTGAGTTTTTTTTTAATTTCAGCTTGAAATCGAAAAATGTTTTTTACAAAAATTTTATTTTTTTTTCAATTTATTTGAATTCAA</canonical>
            <polymorphic>ATTTTGTAGCCCATAGAATTACCTACAATTCTATACAAAATTCATAAAAATCGGTTCAGAATGACAGCTTCAAATTTTTTGAGAATACACTTTTTTTCGAAAAAAAAATTTTTTCCAAAAATTTTCAAATTTCAAGATTTTCACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTKCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCATAACCATATTTGTTCAGAATCTACCATGCCTACTGTGAACTGGACATGTGTATGGAACGACACAAAAGCATACTGTACTCATGGTGGCCGTGTCGTATTATCGATTGGCTGGAACAGGACATTGTCCCCGGCCGTCTCGACAATCGATGCAGTTTCCCGTGGCGACGACTGACACGTGGCATCAATCGAGAAAGGGGCGGAGCCAATGGTGAAGCCGTTTCGAGTGACTCGTCGTCGACGACTTGTGACACGAATGCTACTACACATCATCATCAGAAACATGTTTCTATTGTGAGTTTTTTTTTAATTTCAGCTTGAAATCGAAAAATGTTTTTTACAAAAATTTTATTTTTTTTTCAATTTATTTGAATTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>277 226 213 164 110 10</canonical_bands>
                <polymorphic_bands>323 277 226 164 10</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAAAACTGCTGTTAGCATA</pcr_primer_p1>
		<pcr_primer_p2>AGCTCATAAAATTTCCTTTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>414</pcr_amplicon_size>
		<canonical_amplicon>ACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCT</canonical_amplicon>
		<polymorphic_amplicon>ACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTKCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8515</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>71252</contig_pos>
        <strand></strand>
        <context>gctkcatttt[T/C]ATTCRAATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTT</left_flank>
        <right_flank>ATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCCATAGAATTACCTACAATTCTATACAAAATTCATAAAAATCGGTTCAGAATGACAGCTTCAAATTTTTTGAGAATACACTTTTTTTCGAAAAAAAAATTTTTTCCAAAAATTTTCAAATTTCAAGATTTTCACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCATAACCATATTTGTTCAGAATCTACCATGCCTACTGTGAACTGGACATGTGTATGGAACGACACAAAAGCATACTGTACTCATGGTGGCCGTGTCGTATTATCGATTGGCTGGAACAGGACATTGTCCCCGGCCGTCTCGACAATCGATGCAGTTTCCCGTGGCGACGACTGACACGTGGCATCAATCGAGAAAGGGGCGGAGCCAATGGTGAAGCCGTTTCGAGTGACTCGTCGTCGACGACTTGTGACACGAATGCTACTACACATCATCATCAGAAACATGTTTCTATTGTGAGTTTTTTTTTAATTTCAGCTTGAAATCGAAAAATGTTTTTTACAAAAATTTTATTTTTTTTTCAATTTATTTGAATTCAAATCAGTG</canonical>
            <polymorphic>AGCCCATAGAATTACCTACAATTCTATACAAAATTCATAAAAATCGGTTCAGAATGACAGCTTCAAATTTTTTGAGAATACACTTTTTTTCGAAAAAAAAATTTTTTCCAAAAATTTTCAAATTTCAAGATTTTCACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTYATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCATAACCATATTTGTTCAGAATCTACCATGCCTACTGTGAACTGGACATGTGTATGGAACGACACAAAAGCATACTGTACTCATGGTGGCCGTGTCGTATTATCGATTGGCTGGAACAGGACATTGTCCCCGGCCGTCTCGACAATCGATGCAGTTTCCCGTGGCGACGACTGACACGTGGCATCAATCGAGAAAGGGGCGGAGCCAATGGTGAAGCCGTTTCGAGTGACTCGTCGTCGACGACTTGTGACACGAATGCTACTACACATCATCATCAGAAACATGTTTCTATTGTGAGTTTTTTTTTAATTTCAGCTTGAAATCGAAAAATGTTTTTTACAAAAATTTTATTTTTTTTTCAATTTATTTGAATTCAAATCAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCAAAACTGCTGTTAGCATA</pcr_primer_p1>
		<pcr_primer_p2>TTGAAAATTGTGTTTTATATCATTC</pcr_primer_p2>
		<pcr_amplicon_size>442</pcr_amplicon_size>
		<canonical_amplicon>ACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAA</canonical_amplicon>
		<polymorphic_amplicon>ACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTYATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8516</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>71257</contig_pos>
        <strand>+</strand>
        <context>attttYATTC[A/G]AATTCCAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTC</left_flank>
        <right_flank>AATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGAATTACCTACAATTCTATACAAAATTCATAAAAATCGGTTCAGAATGACAGCTTCAAATTTTTTGAGAATACACTTTTTTTCGAAAAAAAAATTTTTTCCAAAAATTTTCAAATTTCAAGATTTTCACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCATAACCATATTTGTTCAGAATCTACCATGCCTACTGTGAACTGGACATGTGTATGGAACGACACAAAAGCATACTGTACTCATGGTGGCCGTGTCGTATTATCGATTGGCTGGAACAGGACATTGTCCCCGGCCGTCTCGACAATCGATGCAGTTTCCCGTGGCGACGACTGACACGTGGCATCAATCGAGAAAGGGGCGGAGCCAATGGTGAAGCCGTTTCGAGTGACTCGTCGTCGACGACTTGTGACACGAATGCTACTACACATCATCATCAGAAACATGTTTCTATTGTGAGTTTTTTTTTAATTTCAGCTTGAAATCGAAAAATGTTTTTTACAAAAATTTTATTTTTTTTTCAATTTATTTGAATTCAAATCAGTGGTCAT</canonical>
            <polymorphic>ATAGAATTACCTACAATTCTATACAAAATTCATAAAAATCGGTTCAGAATGACAGCTTCAAATTTTTTGAGAATACACTTTTTTTCGAAAAAAAAATTTTTTCCAAAAATTTTCAAATTTCAAGATTTTCACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCRAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCATAACCATATTTGTTCAGAATCTACCATGCCTACTGTGAACTGGACATGTGTATGGAACGACACAAAAGCATACTGTACTCATGGTGGCCGTGTCGTATTATCGATTGGCTGGAACAGGACATTGTCCCCGGCCGTCTCGACAATCGATGCAGTTTCCCGTGGCGACGACTGACACGTGGCATCAATCGAGAAAGGGGCGGAGCCAATGGTGAAGCCGTTTCGAGTGACTCGTCGTCGACGACTTGTGACACGAATGCTACTACACATCATCATCAGAAACATGTTTCTATTGTGAGTTTTTTTTTAATTTCAGCTTGAAATCGAAAAATGTTTTTTACAAAAATTTTATTTTTTTTTCAATTTATTTGAATTCAAATCAGTGGTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>423 104 61 61 47 34 34 31 29 27 27 26 26 21 19 13 9 8</canonical_bands>
                <polymorphic_bands>423 104 61 61 60 47 34 34 27 27 26 26 21 19 13 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAAAACTGCTGTTAGCATA</pcr_primer_p1>
		<pcr_primer_p2>TTGAAAATTGTGTTTTATATCATTC</pcr_primer_p2>
		<pcr_amplicon_size>442</pcr_amplicon_size>
		<canonical_amplicon>ACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAA</canonical_amplicon>
		<polymorphic_amplicon>ACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCRAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8517</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>71303</contig_pos>
        <strand>+</strand>
        <context>TTATGAGCTT[C/T]TGAATGATAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTT</left_flank>
        <right_flank>TGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATGACAGCTTCAAATTTTTTGAGAATACACTTTTTTTCGAAAAAAAAATTTTTTCCAAAAATTTTCAAATTTCAAGATTTTCACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCATAACCATATTTGTTCAGAATCTACCATGCCTACTGTGAACTGGACATGTGTATGGAACGACACAAAAGCATACTGTACTCATGGTGGCCGTGTCGTATTATCGATTGGCTGGAACAGGACATTGTCCCCGGCCGTCTCGACAATCGATGCAGTTTCCCGTGGCGACGACTGACACGTGGCATCAATCGAGAAAGGGGCGGAGCCAATGGTGAAGCCGTTTCGAGTGACTCGTCGTCGACGACTTGTGACACGAATGCTACTACACATCATCATCAGAAACATGTTTCTATTGTGAGTTTTTTTTTAATTTCAGCTTGAAATCGAAAAATGTTTTTTACAAAAATTTTATTTTTTTTTCAATTTATTTGAATTCAAATCAGTGGTCATGCAAATTGTATATCATTTTAAAGCTAATAAAATATACTACAAATTG</canonical>
            <polymorphic>GAATGACAGCTTCAAATTTTTTGAGAATACACTTTTTTTCGAAAAAAAAATTTTTTCCAAAAATTTTCAAATTTCAAGATTTTCACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTYTGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCATAACCATATTTGTTCAGAATCTACCATGCCTACTGTGAACTGGACATGTGTATGGAACGACACAAAAGCATACTGTACTCATGGTGGCCGTGTCGTATTATCGATTGGCTGGAACAGGACATTGTCCCCGGCCGTCTCGACAATCGATGCAGTTTCCCGTGGCGACGACTGACACGTGGCATCAATCGAGAAAGGGGCGGAGCCAATGGTGAAGCCGTTTCGAGTGACTCGTCGTCGACGACTTGTGACACGAATGCTACTACACATCATCATCAGAAACATGTTTCTATTGTGAGTTTTTTTTTAATTTCAGCTTGAAATCGAAAAATGTTTTTTACAAAAATTTTATTTTTTTTTCAATTTATTTGAATTCAAATCAGTGGTCATGCAAATTGTATATCATTTTAAAGCTAATAAAATATACTACAAATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>344 259 158 157 82</canonical_bands>
                <polymorphic_bands>344 259 239 158</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAAAACTGCTGTTAGCATA</pcr_primer_p1>
		<pcr_primer_p2>TGGTAGATTCTGAACAAATATGG</pcr_primer_p2>
		<pcr_amplicon_size>509</pcr_amplicon_size>
		<canonical_amplicon>ACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCATAACCATATTTGTTCAGAATCTACCA</canonical_amplicon>
		<polymorphic_amplicon>ACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTYTGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCATAACCATATTTGTTCAGAATCTACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8518</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>74592</contig_pos>
        <strand>+</strand>
        <context>GATTTTCAGM[A/C]TAAATATGGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACTTAGGCTTAAGAATCGTCATTTTCAGGCTAATAATTGCGATTTTCAGA</left_flank>
        <right_flank>TAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTAAGTCTGAAAATG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCAAACGATTTTCGAATCTCCCGCGCGCTCAAATCCACAGCGGAGCGCATTTGCCGTCGGAAATCGTCAAACGAGGTGGATTCGATGAGGTCAGGATGGGCGGAGCATAGACGACGACGGAGGCTCGATTTTCCGGCGCCTGGGATTCCCATCAGCAAGATTAGGGACATCTGGACACACAGATCGATGGAGAATCGATCAGCCTGCAAACAACTATTTTAGTGCTAAAAATGACTATTTCAAGATTTAAAAATGTCTAAAAATCGATATTTGAAGCCTGCATAAGGCTATTTTAATACGAAAATGAGTCTTAAATGACTATTTCAACCCTAAAAATCGCAATTTTATGTCAAAAAATCGATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTGTATTTTTGAGCCTGAAAATGGCTAACTTAGGCTTAAGAATCGTCATTTTCAGGCTAATAATTGCGATTTTCAGAATAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTAAGTCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTCAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCAGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAAATGGCTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATCGCTATTTTAAGCTTGAAAAAGGCGTTTTTTGACTCAAAAATTACAGTTTCAGGCTTAAAATTCACGAAAAAAAGCCCGCAAAAAGTACTGTGG</canonical>
            <polymorphic>GCTCAAACGATTTTCGAATCTCCCGCGCGCTCAAATCCACAGCGGAGCGCATTTGCCGTCGGAAATCGTCAAACGAGGTGGATTCGATGAGGTCAGGATGGGCGGAGCATAGACGACGACGGAGGCTCGATTTTCCGGCGCCTGGGATTCCCATCAGCAAGATTAGGGACATCTGGACACACAGATCGATGGAGAATCGATCAGCCTGCAAACAACTATTTTAGTGCTAAAAATGACTATTTCAAGATTTAAAAATGTCTAAAAATCGATATTTGAAGCCTGCATAAGGCTATTTTAATACGAAAATGAGTCTTAAATGACTATTTCAACCCTAAAAATCGCAATTTTATGTCAAAAAATCGATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTGTATTTTTGAGCCTGAAAATGGCTAACTTAGGCTTAAGAATCGTCATTTTCAGGCTAATAATTGCGATTTTCAGAMTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTAAGTCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTCAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCAGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAAATGGCTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATCGCTATTTTAAGCTTGAAAAAGGCGTTTTTTGACTCAAAAATTACAGTTTCAGGCTTAAAATTCACGAAAAAAAGCCCGCAAAAAGTACTGTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTTGAAGCGTGAATATGG</pcr_primer_p1>
		<pcr_primer_p2>AGTTTTAGGCTGAAAATAGTCATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTGTATTTTTGAGCCTGAAAATGGCTAACTTAGGCTTAAGAATCGTCATTTTCAGGCTAATAATTGCGATTTTCAGAATAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTAAGTCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTCAGCCTAAAACT</canonical_amplicon>
		<polymorphic_amplicon>ATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTGTATTTTTGAGCCTGAAAATGGCTAACTTAGGCTTAAGAATCGTCATTTTCAGGCTAATAATTGCGATTTTCAGAMTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTAAGTCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTCAGCCTAAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8519</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>74591</contig_pos>
        <strand>+</strand>
        <context>CGATTTTCAG[A/C]MTAAATATGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACTTAGGCTTAAGAATCGTCATTTTCAGGCTAATAATTGCGATTTTCAG</left_flank>
        <right_flank>ATAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTAAGTCTGAAAAT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCTCAAACGATTTTCGAATCTCCCGCGCGCTCAAATCCACAGCGGAGCGCATTTGCCGTCGGAAATCGTCAAACGAGGTGGATTCGATGAGGTCAGGATGGGCGGAGCATAGACGACGACGGAGGCTCGATTTTCCGGCGCCTGGGATTCCCATCAGCAAGATTAGGGACATCTGGACACACAGATCGATGGAGAATCGATCAGCCTGCAAACAACTATTTTAGTGCTAAAAATGACTATTTCAAGATTTAAAAATGTCTAAAAATCGATATTTGAAGCCTGCATAAGGCTATTTTAATACGAAAATGAGTCTTAAATGACTATTTCAACCCTAAAAATCGCAATTTTATGTCAAAAAATCGATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTGTATTTTTGAGCCTGAAAATGGCTAACTTAGGCTTAAGAATCGTCATTTTCAGGCTAATAATTGCGATTTTCAGAATAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTAAGTCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTCAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCAGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAAATGGCTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATCGCTATTTTAAGCTTGAAAAAGGCGTTTTTTGACTCAAAAATTACAGTTTCAGGCTTAAAATTCACGAAAAAAAGCCCGCAAAAAGTACTGTG</canonical>
            <polymorphic>CGCTCAAACGATTTTCGAATCTCCCGCGCGCTCAAATCCACAGCGGAGCGCATTTGCCGTCGGAAATCGTCAAACGAGGTGGATTCGATGAGGTCAGGATGGGCGGAGCATAGACGACGACGGAGGCTCGATTTTCCGGCGCCTGGGATTCCCATCAGCAAGATTAGGGACATCTGGACACACAGATCGATGGAGAATCGATCAGCCTGCAAACAACTATTTTAGTGCTAAAAATGACTATTTCAAGATTTAAAAATGTCTAAAAATCGATATTTGAAGCCTGCATAAGGCTATTTTAATACGAAAATGAGTCTTAAATGACTATTTCAACCCTAAAAATCGCAATTTTATGTCAAAAAATCGATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTGTATTTTTGAGCCTGAAAATGGCTAACTTAGGCTTAAGAATCGTCATTTTCAGGCTAATAATTGCGATTTTCAGMATAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTAAGTCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTCAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCAGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAAATGGCTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATCGCTATTTTAAGCTTGAAAAAGGCGTTTTTTGACTCAAAAATTACAGTTTCAGGCTTAAAATTCACGAAAAAAAGCCCGCAAAAAGTACTGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>436 162 126 84 84 62 25 21</canonical_bands>
                <polymorphic_bands>461 162 126 84 84 62 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATTTGAAGCGTGAATATGG</pcr_primer_p1>
		<pcr_primer_p2>AGTTTTAGGCTGAAAATAGTCATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTGTATTTTTGAGCCTGAAAATGGCTAACTTAGGCTTAAGAATCGTCATTTTCAGGCTAATAATTGCGATTTTCAGAATAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTAAGTCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTCAGCCTAAAACT</canonical_amplicon>
		<polymorphic_amplicon>ATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTGTATTTTTGAGCCTGAAAATGGCTAACTTAGGCTTAAGAATCGTCATTTTCAGGCTAATAATTGCGATTTTCAGMATAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTAAGTCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTCAGCCTAAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8520</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>74554</contig_pos>
        <strand>+</strand>
        <context>TTAGGCTTAA[A/G]AATCGTCATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGCATGAAAACTGTATTTTTGAGCCTGAAAATGGCTAACTTAGGCTTAA</left_flank>
        <right_flank>AATCGTCATTTTCAGGCTAATAATTGCGATTTTCAGAATAAATATGGCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACTTTTGGCGGGAAATCGCGCAAATTTGAAATTCGCGCTCAAACGATTTTCGAATCTCCCGCGCGCTCAAATCCACAGCGGAGCGCATTTGCCGTCGGAAATCGTCAAACGAGGTGGATTCGATGAGGTCAGGATGGGCGGAGCATAGACGACGACGGAGGCTCGATTTTCCGGCGCCTGGGATTCCCATCAGCAAGATTAGGGACATCTGGACACACAGATCGATGGAGAATCGATCAGCCTGCAAACAACTATTTTAGTGCTAAAAATGACTATTTCAAGATTTAAAAATGTCTAAAAATCGATATTTGAAGCCTGCATAAGGCTATTTTAATACGAAAATGAGTCTTAAATGACTATTTCAACCCTAAAAATCGCAATTTTATGTCAAAAAATCGATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTGTATTTTTGAGCCTGAAAATGGCTAACTTAGGCTTAAGAATCGTCATTTTCAGGCTAATAATTGCGATTTTCAGAATAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTAAGTCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTCAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCAGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAAATGGCTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATCGCTATTTTAAGCTTGAAAAAGGCGTTTTTTGACTCAAAAATTACAGTTTCAGGCT</canonical>
            <polymorphic>GAACTTTTGGCGGGAAATCGCGCAAATTTGAAATTCGCGCTCAAACGATTTTCGAATCTCCCGCGCGCTCAAATCCACAGCGGAGCGCATTTGCCGTCGGAAATCGTCAAACGAGGTGGATTCGATGAGGTCAGGATGGGCGGAGCATAGACGACGACGGAGGCTCGATTTTCCGGCGCCTGGGATTCCCATCAGCAAGATTAGGGACATCTGGACACACAGATCGATGGAGAATCGATCAGCCTGCAAACAACTATTTTAGTGCTAAAAATGACTATTTCAAGATTTAAAAATGTCTAAAAATCGATATTTGAAGCCTGCATAAGGCTATTTTAATACGAAAATGAGTCTTAAATGACTATTTCAACCCTAAAAATCGCAATTTTATGTCAAAAAATCGATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTGTATTTTTGAGCCTGAAAATGGCTAACTTAGGCTTAARAATCGTCATTTTCAGGCTAATAATTGCGATTTTCAGAATAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTAAGTCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTCAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCAGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAAATGGCTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATCGCTATTTTAAGCTTGAAAAAGGCGTTTTTTGACTCAAAAATTACAGTTTCAGGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTTAAG</site>
                <isoschizomers>
                    <enzyme>AflII</enzyme>
                    <enzyme>BfrI</enzyme>
                    <enzyme>BspTI</enzyme>
                    <enzyme>Bst98I</enzyme>
                    <enzyme>MspCI</enzyme>
                    <enzyme>Vha464I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>476 154 114 65 65 54 48 24</canonical_bands>
                <polymorphic_bands>630 114 65 65 54 48 24</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 268 65 65 54 48</canonical_bands>
                <polymorphic_bands>768 65 65 54 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATTTGAAGCGTGAATATGG</pcr_primer_p1>
		<pcr_primer_p2>AGTTTTAGGCTGAAAATAGTCATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTGTATTTTTGAGCCTGAAAATGGCTAACTTAGGCTTAAGAATCGTCATTTTCAGGCTAATAATTGCGATTTTCAGAATAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTAAGTCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTCAGCCTAAAACT</canonical_amplicon>
		<polymorphic_amplicon>ATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTGTATTTTTGAGCCTGAAAATGGCTAACTTAGGCTTAARAATCGTCATTTTCAGGCTAATAATTGCGATTTTCAGAATAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTAAGTCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTCAGCCTAAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8521</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>74451</contig_pos>
        <strand>+</strand>
        <context>ATGTCAWAAA[A/G]TCGATATTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTCTTAAATGACTATTTCAACCCTAAAAATCGCAATTTTATGTCAAAAA</left_flank>
        <right_flank>TCGATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCACTCCAAAAAGACAACGCCAAATTCCAATAATCGATTTTTTGCGATTTTTCGAAACTTCCGACGCATACTTTTCAGGTGAAAAATGTCTTCGATGAGGTAGAACTTTTGGCGGGAAATCGCGCAAATTTGAAATTCGCGCTCAAACGATTTTCGAATCTCCCGCGCGCTCAAATCCACAGCGGAGCGCATTTGCCGTCGGAAATCGTCAAACGAGGTGGATTCGATGAGGTCAGGATGGGCGGAGCATAGACGACGACGGAGGCTCGATTTTCCGGCGCCTGGGATTCCCATCAGCAAGATTAGGGACATCTGGACACACAGATCGATGGAGAATCGATCAGCCTGCAAACAACTATTTTAGTGCTAAAAATGACTATTTCAAGATTTAAAAATGTCTAAAAATCGATATTTGAAGCCTGCATAAGGCTATTTTAATACGAAAATGAGTCTTAAATGACTATTTCAACCCTAAAAATCGCAATTTTATGTCAAAAAATCGATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTGTATTTTTGAGCCTGAAAATGGCTAACTTAGGCTTAAGAATCGTCATTTTCAGGCTAATAATTGCGATTTTCAGAATAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTAAGTCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTCAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCAGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTA</canonical>
            <polymorphic>TGCACTCCAAAAAGACAACGCCAAATTCCAATAATCGATTTTTTGCGATTTTTCGAAACTTCCGACGCATACTTTTCAGGTGAAAAATGTCTTCGATGAGGTAGAACTTTTGGCGGGAAATCGCGCAAATTTGAAATTCGCGCTCAAACGATTTTCGAATCTCCCGCGCGCTCAAATCCACAGCGGAGCGCATTTGCCGTCGGAAATCGTCAAACGAGGTGGATTCGATGAGGTCAGGATGGGCGGAGCATAGACGACGACGGAGGCTCGATTTTCCGGCGCCTGGGATTCCCATCAGCAAGATTAGGGACATCTGGACACACAGATCGATGGAGAATCGATCAGCCTGCAAACAACTATTTTAGTGCTAAAAATGACTATTTCAAGATTTAAAAATGTCTAAAAATCGATATTTGAAGCCTGCATAAGGCTATTTTAATACGAAAATGAGTCTTAAATGACTATTTCAACCCTAAAAATCGCAATTTTATGTCAAAAARTCGATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTGTATTTTTGAGCCTGAAAATGGCTAACTTAGGCTTAAGAATCGTCATTTTCAGGCTAATAATTGCGATTTTCAGAATAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTAAGTCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTCAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCAGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>499 292 94 69 35 11</canonical_bands>
                <polymorphic_bands>593 292 69 35 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACACAGATCGATGGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>CAGTTTTCATGCTTAAAATGACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CACACAGATCGATGGAGAATCGATCAGCCTGCAAACAACTATTTTAGTGCTAAAAATGACTATTTCAAGATTTAAAAATGTCTAAAAATCGATATTTGAAGCCTGCATAAGGCTATTTTAATACGAAAATGAGTCTTAAATGACTATTTCAACCCTAAAAATCGCAATTTTATGTCAAAAAATCGATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTG</canonical_amplicon>
		<polymorphic_amplicon>CACACAGATCGATGGAGAATCGATCAGCCTGCAAACAACTATTTTAGTGCTAAAAATGACTATTTCAAGATTTAAAAATGTCTAAAAATCGATATTTGAAGCCTGCATAAGGCTATTTTAATACGAAAATGAGTCTTAAATGACTATTTCAACCCTAAAAATCGCAATTTTATGTCAAAAARTCGATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8522</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>74447</contig_pos>
        <strand>+</strand>
        <context>TTTTATGTCA[A/T]AAARTCGATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATGAGTCTTAAATGACTATTTCAACCCTAAAAATCGCAATTTTATGTCA</left_flank>
        <right_flank>AAAATCGATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGTGCACTCCAAAAAGACAACGCCAAATTCCAATAATCGATTTTTTGCGATTTTTCGAAACTTCCGACGCATACTTTTCAGGTGAAAAATGTCTTCGATGAGGTAGAACTTTTGGCGGGAAATCGCGCAAATTTGAAATTCGCGCTCAAACGATTTTCGAATCTCCCGCGCGCTCAAATCCACAGCGGAGCGCATTTGCCGTCGGAAATCGTCAAACGAGGTGGATTCGATGAGGTCAGGATGGGCGGAGCATAGACGACGACGGAGGCTCGATTTTCCGGCGCCTGGGATTCCCATCAGCAAGATTAGGGACATCTGGACACACAGATCGATGGAGAATCGATCAGCCTGCAAACAACTATTTTAGTGCTAAAAATGACTATTTCAAGATTTAAAAATGTCTAAAAATCGATATTTGAAGCCTGCATAAGGCTATTTTAATACGAAAATGAGTCTTAAATGACTATTTCAACCCTAAAAATCGCAATTTTATGTCAAAAAATCGATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTGTATTTTTGAGCCTGAAAATGGCTAACTTAGGCTTAAGAATCGTCATTTTCAGGCTAATAATTGCGATTTTCAGAATAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTAAGTCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTCAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCAGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAG</canonical>
            <polymorphic>GACGTGCACTCCAAAAAGACAACGCCAAATTCCAATAATCGATTTTTTGCGATTTTTCGAAACTTCCGACGCATACTTTTCAGGTGAAAAATGTCTTCGATGAGGTAGAACTTTTGGCGGGAAATCGCGCAAATTTGAAATTCGCGCTCAAACGATTTTCGAATCTCCCGCGCGCTCAAATCCACAGCGGAGCGCATTTGCCGTCGGAAATCGTCAAACGAGGTGGATTCGATGAGGTCAGGATGGGCGGAGCATAGACGACGACGGAGGCTCGATTTTCCGGCGCCTGGGATTCCCATCAGCAAGATTAGGGACATCTGGACACACAGATCGATGGAGAATCGATCAGCCTGCAAACAACTATTTTAGTGCTAAAAATGACTATTTCAAGATTTAAAAATGTCTAAAAATCGATATTTGAAGCCTGCATAAGGCTATTTTAATACGAAAATGAGTCTTAAATGACTATTTCAACCCTAAAAATCGCAATTTTATGTCAWAAAATCGATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTGTATTTTTGAGCCTGAAAATGGCTAACTTAGGCTTAAGAATCGTCATTTTCAGGCTAATAATTGCGATTTTCAGAATAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTAAGTCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTCAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCAGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACACAGATCGATGGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>CAGTTTTCATGCTTAAAATGACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CACACAGATCGATGGAGAATCGATCAGCCTGCAAACAACTATTTTAGTGCTAAAAATGACTATTTCAAGATTTAAAAATGTCTAAAAATCGATATTTGAAGCCTGCATAAGGCTATTTTAATACGAAAATGAGTCTTAAATGACTATTTCAACCCTAAAAATCGCAATTTTATGTCAAAAAATCGATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTG</canonical_amplicon>
		<polymorphic_amplicon>CACACAGATCGATGGAGAATCGATCAGCCTGCAAACAACTATTTTAGTGCTAAAAATGACTATTTCAAGATTTAAAAATGTCTAAAAATCGATATTTGAAGCCTGCATAAGGCTATTTTAATACGAAAATGAGTCTTAAATGACTATTTCAACCCTAAAAATCGCAATTTTATGTCAWAAAATCGATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8523</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>74422</contig_pos>
        <strand>+</strand>
        <context>ACTATTTCAA[C/G]CCTAAAAATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTGCATAAGGCTATTTTAATACGAAAATGAGTCTTAAATGACTATTTCAA</left_flank>
        <right_flank>CCTAAAAATCGCAATTTTATGTCAAAAAATCGATATTTGAAGCGTGAATA</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATCCCTTCGAATCGCTTCAGAAGACGTGCACTCCAAAAAGACAACGCCAAATTCCAATAATCGATTTTTTGCGATTTTTCGAAACTTCCGACGCATACTTTTCAGGTGAAAAATGTCTTCGATGAGGTAGAACTTTTGGCGGGAAATCGCGCAAATTTGAAATTCGCGCTCAAACGATTTTCGAATCTCCCGCGCGCTCAAATCCACAGCGGAGCGCATTTGCCGTCGGAAATCGTCAAACGAGGTGGATTCGATGAGGTCAGGATGGGCGGAGCATAGACGACGACGGAGGCTCGATTTTCCGGCGCCTGGGATTCCCATCAGCAAGATTAGGGACATCTGGACACACAGATCGATGGAGAATCGATCAGCCTGCAAACAACTATTTTAGTGCTAAAAATGACTATTTCAAGATTTAAAAATGTCTAAAAATCGATATTTGAAGCCTGCATAAGGCTATTTTAATACGAAAATGAGTCTTAAATGACTATTTCAACCCTAAAAATCGCAATTTTATGTCAAAAAATCGATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTGTATTTTTGAGCCTGAAAATGGCTAACTTAGGCTTAAGAATCGTCATTTTCAGGCTAATAATTGCGATTTTCAGAATAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTAAGTCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTCAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCAGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTT</canonical>
            <polymorphic>AGAATCCCTTCGAATCGCTTCAGAAGACGTGCACTCCAAAAAGACAACGCCAAATTCCAATAATCGATTTTTTGCGATTTTTCGAAACTTCCGACGCATACTTTTCAGGTGAAAAATGTCTTCGATGAGGTAGAACTTTTGGCGGGAAATCGCGCAAATTTGAAATTCGCGCTCAAACGATTTTCGAATCTCCCGCGCGCTCAAATCCACAGCGGAGCGCATTTGCCGTCGGAAATCGTCAAACGAGGTGGATTCGATGAGGTCAGGATGGGCGGAGCATAGACGACGACGGAGGCTCGATTTTCCGGCGCCTGGGATTCCCATCAGCAAGATTAGGGACATCTGGACACACAGATCGATGGAGAATCGATCAGCCTGCAAACAACTATTTTAGTGCTAAAAATGACTATTTCAAGATTTAAAAATGTCTAAAAATCGATATTTGAAGCCTGCATAAGGCTATTTTAATACGAAAATGAGTCTTAAATGACTATTTCAASCCTAAAAATCGCAATTTTATGTCAAAAAATCGATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTGTATTTTTGAGCCTGAAAATGGCTAACTTAGGCTTAAGAATCGTCATTTTCAGGCTAATAATTGCGATTTTCAGAATAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTAAGTCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTCAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCAGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACACAGATCGATGGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>CAGTTTTCATGCTTAAAATGACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CACACAGATCGATGGAGAATCGATCAGCCTGCAAACAACTATTTTAGTGCTAAAAATGACTATTTCAAGATTTAAAAATGTCTAAAAATCGATATTTGAAGCCTGCATAAGGCTATTTTAATACGAAAATGAGTCTTAAATGACTATTTCAACCCTAAAAATCGCAATTTTATGTCAAAAAATCGATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTG</canonical_amplicon>
		<polymorphic_amplicon>CACACAGATCGATGGAGAATCGATCAGCCTGCAAACAACTATTTTAGTGCTAAAAATGACTATTTCAAGATTTAAAAATGTCTAAAAATCGATATTTGAAGCCTGCATAAGGCTATTTTAATACGAAAATGAGTCTTAAATGACTATTTCAASCCTAAAAATCGCAATTTTATGTCAAAAAATCGATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8531</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>5150</contig_pos>
        <strand>+</strand>
        <context>CCTCCATTTC[C/T]TTCTAGAACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATATTTCAGGGATCAACTTTATGACCTAAAAAACCTCCATCCTCCATTTC</left_flank>
        <right_flank>TTCTAGAACAATTTTGCTGAAATTCCATTGTTCCTATTTTCTCCACACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTTCGTATTTCTAGCTACGGATTTCTGGCTATGGATTTCTGAGGTCCACCTTCCCTTAGGATGAATTGCGGATTTCGTCTTTCTTGGATGGGAAGTTCAAAATATTAATAAAGTTTCTAAAGACATTGAATACTGTAGTTTTTTTGGTTTACAAAGTTTCCTAATTTCAAAAGAAAGCCAAGAAAATTCCAACCCGATCATACCGTATCGAAAATAAATTGTTTATCATGATAACACAAATGTTTTATCAGTTGACCACTTTTTCATATCTTTCACAGAAATCGAGATGAATTGGCTCAAAGTTGACGGTTGGGTAGGCATTATTTTTGAGTGTTTATGATAACTCAAGTAAATGCTCATTTTGAAGCTCTCATTGAGCCAAATACAAAATACGGTCTTTGAACGTTTGTCTGTGTGTCCTGAAGACTTTTGTTCCTTCCCTTCACTATATTTCAGGGATCAACTTTATGACCTAAAAAACCTCCATCCTCCATTTCTTTCTAGAACAATTTTGCTGAAATTCCATTGTTCCTATTTTCTCCACACTTTCAGCTTCTTCTTCTTCTCCTCCTTTCCACAAAATAACCAACTCATTGTTTCTTTCTTCTTTTTTCTAACAAGTACTTTTTGTTTTCTCTGTTTTTCTCTCTGATAGTTTCAAGAAAAAGGAAACAAGATCTCCAAAAGTGTGTTGTTTTGTCTGTATGTGTTTCTCTTTTTTGTTCACATTGCAATTCGTGAATAATTAATGGAAAAGAGAAAGAGAATGGAGAGAAAAAGTGAAACTGGAACAAATCATAAATATTTAAGAACGATTTTGATCAAAATGAATATTTAAATGTTTGAGTTTTAGCTCAATTACCGTGAAACATGAATCAGAAGGGATGGCTTCTTAATCGTCAACTTTGAGCTTAATTATCTTGGTTCCTGTAATAGATATCAAAAAGTGATCAACTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTG</canonical>
            <polymorphic>AGCTTCGTATTTCTAGCTACGGATTTCTGGCTATGGATTTCTGAGGTCCACCTTCCCTTAGGATGAATTGCGGATTTCGTCTTTCTTGGATGGGAAGTTCAAAATATTAATAAAGTTTCTAAAGACATTGAATACTGTAGTTTTTTTGGTTTACAAAGTTTCCTAATTTCAAAAGAAAGCCAAGAAAATTCCAACCCGATCATACCGTATCGAAAATAAATTGTTTATCATGATAACACAAATGTTTTATCAGTTGACCACTTTTTCATATCTTTCACAGAAATCGAGATGAATTGGCTCAAAGTTGACGGTTGGGTAGGCATTATTTTTGAGTGTTTATGATAACTCAAGTAAATGCTCATTTTGAAGCTCTCATTGAGCCAAATACAAAATACGGTCTTTGAACGTTTGTCTGTGTGTCCTGAAGACTTTTGTTCCTTCCCTTCACTATATTTCAGGGATCAACTTTATGACCTAAAAAACCTCCATCCTCCATTTCYTTCTAGAACAATTTTGCTGAAATTCCATTGTTCCTATTTTCTCCACACTTTCAGCTTCTTCTTCTTCTCCTCCTTTCCACAAAATAACCAACTCATTGTTTCTTTCTTCTTTTTTCTAACAAGTACTTTTTGTTTTCTCTGTTTTTCTCTCTGATAGTTTCAAGAAAAAGGAAACAAGATCTCCAAAAGTGTGTTGTTTTGTCTGTATGTGTTTCTCTTTTTTGTTCACATTGCAATTCGTGAATAATTAATGGAAAAGAGAAAGAGAATGGAGAGAAAAAGTGAAACTGGAACAAATCATAAATATTTAAGAACGATTTTGATCAAAATGAATATTTAAATGTTTGAGTTTTAGCTCAATTACCGTGAAACATGAATCAGAAGGGATGGCTTCTTAATCGTCAACTTTGAGCTTAATTATCTTGGTTCCTGTAATAGATATCAAAAAGTGATCAACTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCATTATTTTTGAGTGTTTATG</pcr_primer_p1>
		<pcr_primer_p2>GAGAAGAAGAAGAAGCTGAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGCATTATTTTTGAGTGTTTATGATAACTCAAGTAAATGCTCATTTTGAAGCTCTCATTGAGCCAAATACAAAATACGGTCTTTGAACGTTTGTCTGTGTGTCCTGAAGACTTTTGTTCCTTCCCTTCACTATATTTCAGGGATCAACTTTATGACCTAAAAAACCTCCATCCTCCATTTCTTTCTAGAACAATTTTGCTGAAATTCCATTGTTCCTATTTTCTCCACACTTTCAGCTTCTTCTTCTTCTC</canonical_amplicon>
		<polymorphic_amplicon>GGCATTATTTTTGAGTGTTTATGATAACTCAAGTAAATGCTCATTTTGAAGCTCTCATTGAGCCAAATACAAAATACGGTCTTTGAACGTTTGTCTGTGTGTCCTGAAGACTTTTGTTCCTTCCCTTCACTATATTTCAGGGATCAACTTTATGACCTAAAAAACCTCCATCCTCCATTTCYTTCTAGAACAATTTTGCTGAAATTCCATTGTTCCTATTTTCTCCACACTTTCAGCTTCTTCTTCTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8533</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>94388</contig_pos>
        <strand>+</strand>
        <context>TATTTCATTT[G/T]ctctaattga</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGTGGTTGTGAATTCGATGACCCGAAAATTTCAATTATCTATTTCATTT</left_flank>
        <right_flank>CTCTAATTGAAGTCCATCCAAACCATCTAATTTGAGCTCAATTATCTAGG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAGAAGATGAAGAAGAGGACTCAAAATTTTGAGGAGTTTCTGAAGGCCACACAGTGTAAGCCGGGAAAGCATCTGAAGAAGTACTTCAAGATTGGAGATAGTGAAAAAGAGTGGAGAAGCCGGAGGCCAAAAAAAAACAAAAAATAAGCGAAAAAACTGCAGAAGAACGAAAAATTATGGCCGGAAATGCAGAAAACAAGCATTGACCAAGAAAAAACATTTTTCGAAAATGTTCCCGCTTGATTTTTGTGTTGCGACAGAGCGCGCGCTCACTTGGTTACGGTAGCAAAAAAATAATTTTTTCAGACGAAAATCGATTTTTTCGAATAAATTAAAAGAAGAATTTTGTAAAGCTTTGTTTCTGGACATTCCCAATGTTTAATGAACAACAAAGCAAAAATAAAAGCACAGTTTAACATTCAAGTTAGGTTGTTCCAAGAGATGAAAAATGTGGTTGTGAATTCGATGACCCGAAAATTTCAATTATCTATTTCATTTTCTCTAATTGAAGTCCATCCAAACCATCTAATTTGAGCTCAATTATCTAGGTTTCTGTAAGAGATATCCAAAATCCGTTAACTGATAAAATATGGGAGATATCAAAATGAACAATTTGTTAGTCAAATTTTTTTATATCTTTCAGAGGAAGCGAGATATTTGAGCTCAAAGTGCATGCAGAGGGTGGGCTTCTATTAGAGCAAGAACGGTATTTTAAAAAAACTCACTCCAAGTGATCATAGTGATTTCCAAACAACCGATGAAGACAGTCGGTGGGGCAAAGGAAAATCGCCATACAGACCGGGATCGCGCCTCTTGAACTCCTTTTGGGAATCCCATCTTTTCCACTTCACCTAAAGTTAGATCTTCACCTAAAGTTAGATCTTCACCTAAAAATAGATCAATTCAGTAGTCTTCAACATGGTTTTCTCTCCTACAGATCCTGCACCACCTCTCTAGTTCAATCTTTTTCGAATTATAAAGCTACTCTTTTTGAAATAC</canonical>
            <polymorphic>GCAGAAGATGAAGAAGAGGACTCAAAATTTTGAGGAGTTTCTGAAGGCCACACAGTGTAAGCCGGGAAAGCATCTGAAGAAGTACTTCAAGATTGGAGATAGTGAAAAAGAGTGGAGAAGCCGGAGGCCAAAAAAAAACAAAAAATAAGCGAAAAAACTGCAGAAGAACGAAAAATTATGGCCGGAAATGCAGAAAACAAGCATTGACCAAGAAAAAACATTTTTCGAAAATGTTCCCGCTTGATTTTTGTGTTGCGACAGAGCGCGCGCTCACTTGGTTACGGTAGCAAAAAAATAATTTTTTCAGACGAAAATCGATTTTTTCGAATAAATTAAAAGAAGAATTTTGTAAAGCTTTGTTTCTGGACATTCCCAATGTTTAATGAACAACAAAGCAAAAATAAAAGCACAGTTTAACATTCAAGTTAGGTTGTTCCAAGAGATGAAAAATGTGGTTGTGAATTCGATGACCCGAAAATTTCAATTATCTATTTCATTTKCTCTAATTGAAGTCCATCCAAACCATCTAATTTGAGCTCAATTATCTAGGTTTCTGTAAGAGATATCCAAAATCCGTTAACTGATAAAATATGGGAGATATCAAAATGAACAATTTGTTAGTCAAATTTTTTTATATCTTTCAGAGGAAGCGAGATATTTGAGCTCAAAGTGCATGCAGAGGGTGGGCTTCTATTAGAGCAAGAACGGTATTTTAAAAAAACTCACTCCAAGTGATCATAGTGATTTCCAAACAACCGATGAAGACAGTCGGTGGGGCAAAGGAAAATCGCCATACAGACCGGGATCGCGCCTCTTGAACTCCTTTTGGGAATCCCATCTTTTCCACTTCACCTAAAGTTAGATCTTCACCTAAAGTTAGATCTTCACCTAAAAATAGATCAATTCAGTAGTCTTCAACATGGTTTTCTCTCCTACAGATCCTGCACCACCTCTCTAGTTCAATCTTTTTCGAATTATAAAGCTACTCTTTTTGAAATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAGTTTAACATTCAAGTTAGGT</pcr_primer_p1>
		<pcr_primer_p2>TATGATCACTTGGAGTGAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>333</pcr_amplicon_size>
		<canonical_amplicon>CACAGTTTAACATTCAAGTTAGGTTGTTCCAAGAGATGAAAAATGTGGTTGTGAATTCGATGACCCGAAAATTTCAATTATCTATTTCATTTTCTCTAATTGAAGTCCATCCAAACCATCTAATTTGAGCTCAATTATCTAGGTTTCTGTAAGAGATATCCAAAATCCGTTAACTGATAAAATATGGGAGATATCAAAATGAACAATTTGTTAGTCAAATTTTTTTATATCTTTCAGAGGAAGCGAGATATTTGAGCTCAAAGTGCATGCAGAGGGTGGGCTTCTATTAGAGCAAGAACGGTATTTTAAAAAAACTCACTCCAAGTGATCATA</canonical_amplicon>
		<polymorphic_amplicon>CACAGTTTAACATTCAAGTTAGGTTGTTCCAAGAGATGAAAAATGTGGTTGTGAATTCGATGACCCGAAAATTTCAATTATCTATTTCATTTKCTCTAATTGAAGTCCATCCAAACCATCTAATTTGAGCTCAATTATCTAGGTTTCTGTAAGAGATATCCAAAATCCGTTAACTGATAAAATATGGGAGATATCAAAATGAACAATTTGTTAGTCAAATTTTTTTATATCTTTCAGAGGAAGCGAGATATTTGAGCTCAAAGTGCATGCAGAGGGTGGGCTTCTATTAGAGCAAGAACGGTATTTTAAAAAAACTCACTCCAAGTGATCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8534</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>94339</contig_pos>
        <strand>+</strand>
        <context>AGATGAAAAA[A/T]GTGGTTGTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATAAAAGCACAGTTTAACATTCAAGTTAGGTTGTTCCAAGAGATGAAAAA</left_flank>
        <right_flank>GTGGTTGTGAATTCGATGACCCGAAAATTTCAATTATCTATTTCATTTTC</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCGAATCTCCTCACAGTGTCCTCAATCCCCTGAAAAACATTTTATAGGCAGAAGATGAAGAAGAGGACTCAAAATTTTGAGGAGTTTCTGAAGGCCACACAGTGTAAGCCGGGAAAGCATCTGAAGAAGTACTTCAAGATTGGAGATAGTGAAAAAGAGTGGAGAAGCCGGAGGCCAAAAAAAAACAAAAAATAAGCGAAAAAACTGCAGAAGAACGAAAAATTATGGCCGGAAATGCAGAAAACAAGCATTGACCAAGAAAAAACATTTTTCGAAAATGTTCCCGCTTGATTTTTGTGTTGCGACAGAGCGCGCGCTCACTTGGTTACGGTAGCAAAAAAATAATTTTTTCAGACGAAAATCGATTTTTTCGAATAAATTAAAAGAAGAATTTTGTAAAGCTTTGTTTCTGGACATTCCCAATGTTTAATGAACAACAAAGCAAAAATAAAAGCACAGTTTAACATTCAAGTTAGGTTGTTCCAAGAGATGAAAAATGTGGTTGTGAATTCGATGACCCGAAAATTTCAATTATCTATTTCATTTTCTCTAATTGAAGTCCATCCAAACCATCTAATTTGAGCTCAATTATCTAGGTTTCTGTAAGAGATATCCAAAATCCGTTAACTGATAAAATATGGGAGATATCAAAATGAACAATTTGTTAGTCAAATTTTTTTATATCTTTCAGAGGAAGCGAGATATTTGAGCTCAAAGTGCATGCAGAGGGTGGGCTTCTATTAGAGCAAGAACGGTATTTTAAAAAAACTCACTCCAAGTGATCATAGTGATTTCCAAACAACCGATGAAGACAGTCGGTGGGGCAAAGGAAAATCGCCATACAGACCGGGATCGCGCCTCTTGAACTCCTTTTGGGAATCCCATCTTTTCCACTTCACCTAAAGTTAGATCTTCACCTAAAGTTAGATCTTCACCTAAAAATAGATCAATTCAGTAGTCTTCAACATGGTTTTCTCTCCTACAGATCCTGCACCACC</canonical>
            <polymorphic>CTCCGAATCTCCTCACAGTGTCCTCAATCCCCTGAAAAACATTTTATAGGCAGAAGATGAAGAAGAGGACTCAAAATTTTGAGGAGTTTCTGAAGGCCACACAGTGTAAGCCGGGAAAGCATCTGAAGAAGTACTTCAAGATTGGAGATAGTGAAAAAGAGTGGAGAAGCCGGAGGCCAAAAAAAAACAAAAAATAAGCGAAAAAACTGCAGAAGAACGAAAAATTATGGCCGGAAATGCAGAAAACAAGCATTGACCAAGAAAAAACATTTTTCGAAAATGTTCCCGCTTGATTTTTGTGTTGCGACAGAGCGCGCGCTCACTTGGTTACGGTAGCAAAAAAATAATTTTTTCAGACGAAAATCGATTTTTTCGAATAAATTAAAAGAAGAATTTTGTAAAGCTTTGTTTCTGGACATTCCCAATGTTTAATGAACAACAAAGCAAAAATAAAAGCACAGTTTAACATTCAAGTTAGGTTGTTCCAAGAGATGAAAAAWGTGGTTGTGAATTCGATGACCCGAAAATTTCAATTATCTATTTCATTTTCTCTAATTGAAGTCCATCCAAACCATCTAATTTGAGCTCAATTATCTAGGTTTCTGTAAGAGATATCCAAAATCCGTTAACTGATAAAATATGGGAGATATCAAAATGAACAATTTGTTAGTCAAATTTTTTTATATCTTTCAGAGGAAGCGAGATATTTGAGCTCAAAGTGCATGCAGAGGGTGGGCTTCTATTAGAGCAAGAACGGTATTTTAAAAAAACTCACTCCAAGTGATCATAGTGATTTCCAAACAACCGATGAAGACAGTCGGTGGGGCAAAGGAAAATCGCCATACAGACCGGGATCGCGCCTCTTGAACTCCTTTTGGGAATCCCATCTTTTCCACTTCACCTAAAGTTAGATCTTCACCTAAAGTTAGATCTTCACCTAAAAATAGATCAATTCAGTAGTCTTCAACATGGTTTTCTCTCCTACAGATCCTGCACCACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAATAAAAGCACAGTTTAACA</pcr_primer_p1>
		<pcr_primer_p2>TATGATCACTTGGAGTGAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>345</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATAAAAGCACAGTTTAACATTCAAGTTAGGTTGTTCCAAGAGATGAAAAATGTGGTTGTGAATTCGATGACCCGAAAATTTCAATTATCTATTTCATTTTCTCTAATTGAAGTCCATCCAAACCATCTAATTTGAGCTCAATTATCTAGGTTTCTGTAAGAGATATCCAAAATCCGTTAACTGATAAAATATGGGAGATATCAAAATGAACAATTTGTTAGTCAAATTTTTTTATATCTTTCAGAGGAAGCGAGATATTTGAGCTCAAAGTGCATGCAGAGGGTGGGCTTCTATTAGAGCAAGAACGGTATTTTAAAAAAACTCACTCCAAGTGATCATA</canonical_amplicon>
		<polymorphic_amplicon>CAAAAATAAAAGCACAGTTTAACATTCAAGTTAGGTTGTTCCAAGAGATGAAAAAWGTGGTTGTGAATTCGATGACCCGAAAATTTCAATTATCTATTTCATTTTCTCTAATTGAAGTCCATCCAAACCATCTAATTTGAGCTCAATTATCTAGGTTTCTGTAAGAGATATCCAAAATCCGTTAACTGATAAAATATGGGAGATATCAAAATGAACAATTTGTTAGTCAAATTTTTTTATATCTTTCAGAGGAAGCGAGATATTTGAGCTCAAAGTGCATGCAGAGGGTGGGCTTCTATTAGAGCAAGAACGGTATTTTAAAAAAACTCACTCCAAGTGATCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8535</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>94321</contig_pos>
        <strand>+</strand>
        <context>AAGTTAGGTT[A/G]TTCCAAGAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGAACAACAAAGCAAAAATAAAAGCACAGTTTAACATTCAAGTTAGGTT</left_flank>
        <right_flank>TTCCAAGAGATGAAAAATGTGGTTGTGAATTCGATGACCCGAAAATTTCA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACCATGGTCTGCCTCCGCTCCGAATCTCCTCACAGTGTCCTCAATCCCCTGAAAAACATTTTATAGGCAGAAGATGAAGAAGAGGACTCAAAATTTTGAGGAGTTTCTGAAGGCCACACAGTGTAAGCCGGGAAAGCATCTGAAGAAGTACTTCAAGATTGGAGATAGTGAAAAAGAGTGGAGAAGCCGGAGGCCAAAAAAAAACAAAAAATAAGCGAAAAAACTGCAGAAGAACGAAAAATTATGGCCGGAAATGCAGAAAACAAGCATTGACCAAGAAAAAACATTTTTCGAAAATGTTCCCGCTTGATTTTTGTGTTGCGACAGAGCGCGCGCTCACTTGGTTACGGTAGCAAAAAAATAATTTTTTCAGACGAAAATCGATTTTTTCGAATAAATTAAAAGAAGAATTTTGTAAAGCTTTGTTTCTGGACATTCCCAATGTTTAATGAACAACAAAGCAAAAATAAAAGCACAGTTTAACATTCAAGTTAGGTTGTTCCAAGAGATGAAAAATGTGGTTGTGAATTCGATGACCCGAAAATTTCAATTATCTATTTCATTTTCTCTAATTGAAGTCCATCCAAACCATCTAATTTGAGCTCAATTATCTAGGTTTCTGTAAGAGATATCCAAAATCCGTTAACTGATAAAATATGGGAGATATCAAAATGAACAATTTGTTAGTCAAATTTTTTTATATCTTTCAGAGGAAGCGAGATATTTGAGCTCAAAGTGCATGCAGAGGGTGGGCTTCTATTAGAGCAAGAACGGTATTTTAAAAAAACTCACTCCAAGTGATCATAGTGATTTCCAAACAACCGATGAAGACAGTCGGTGGGGCAAAGGAAAATCGCCATACAGACCGGGATCGCGCCTCTTGAACTCCTTTTGGGAATCCCATCTTTTCCACTTCACCTAAAGTTAGATCTTCACCTAAAGTTAGATCTTCACCTAAAAATAGATCAATTCAGTAGTCTTCAACATGGTTTTCTCTCC</canonical>
            <polymorphic>CACCATGGTCTGCCTCCGCTCCGAATCTCCTCACAGTGTCCTCAATCCCCTGAAAAACATTTTATAGGCAGAAGATGAAGAAGAGGACTCAAAATTTTGAGGAGTTTCTGAAGGCCACACAGTGTAAGCCGGGAAAGCATCTGAAGAAGTACTTCAAGATTGGAGATAGTGAAAAAGAGTGGAGAAGCCGGAGGCCAAAAAAAAACAAAAAATAAGCGAAAAAACTGCAGAAGAACGAAAAATTATGGCCGGAAATGCAGAAAACAAGCATTGACCAAGAAAAAACATTTTTCGAAAATGTTCCCGCTTGATTTTTGTGTTGCGACAGAGCGCGCGCTCACTTGGTTACGGTAGCAAAAAAATAATTTTTTCAGACGAAAATCGATTTTTTCGAATAAATTAAAAGAAGAATTTTGTAAAGCTTTGTTTCTGGACATTCCCAATGTTTAATGAACAACAAAGCAAAAATAAAAGCACAGTTTAACATTCAAGTTAGGTTRTTCCAAGAGATGAAAAATGTGGTTGTGAATTCGATGACCCGAAAATTTCAATTATCTATTTCATTTTCTCTAATTGAAGTCCATCCAAACCATCTAATTTGAGCTCAATTATCTAGGTTTCTGTAAGAGATATCCAAAATCCGTTAACTGATAAAATATGGGAGATATCAAAATGAACAATTTGTTAGTCAAATTTTTTTATATCTTTCAGAGGAAGCGAGATATTTGAGCTCAAAGTGCATGCAGAGGGTGGGCTTCTATTAGAGCAAGAACGGTATTTTAAAAAAACTCACTCCAAGTGATCATAGTGATTTCCAAACAACCGATGAAGACAGTCGGTGGGGCAAAGGAAAATCGCCATACAGACCGGGATCGCGCCTCTTGAACTCCTTTTGGGAATCCCATCTTTTCCACTTCACCTAAAGTTAGATCTTCACCTAAAGTTAGATCTTCACCTAAAAATAGATCAATTCAGTAGTCTTCAACATGGTTTTCTCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGGTTACGGTAGCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATAATTGAAATTTTCGGGTCA</pcr_primer_p2>
		<pcr_amplicon_size>215</pcr_amplicon_size>
		<canonical_amplicon>CTTGGTTACGGTAGCAAAAAAATAATTTTTTCAGACGAAAATCGATTTTTTCGAATAAATTAAAAGAAGAATTTTGTAAAGCTTTGTTTCTGGACATTCCCAATGTTTAATGAACAACAAAGCAAAAATAAAAGCACAGTTTAACATTCAAGTTAGGTTGTTCCAAGAGATGAAAAATGTGGTTGTGAATTCGATGACCCGAAAATTTCAATTAT</canonical_amplicon>
		<polymorphic_amplicon>CTTGGTTACGGTAGCAAAAAAATAATTTTTTCAGACGAAAATCGATTTTTTCGAATAAATTAAAAGAAGAATTTTGTAAAGCTTTGTTTCTGGACATTCCCAATGTTTAATGAACAACAAAGCAAAAATAAAAGCACAGTTTAACATTCAAGTTAGGTTRTTCCAAGAGATGAAAAATGTGGTTGTGAATTCGATGACCCGAAAATTTCAATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8536</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>94282</contig_pos>
        <strand>+</strand>
        <context>TGAACAACAA[A/T]GCAAAAATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTGTAAAGCTTTGTTTCTGGACATTCCCAATGTTTAATGAACAACAA</left_flank>
        <right_flank>GCAAAAATAAAAGCACAGTTTAACATTCAAGTTAGGTTGTTCCAAGAGAT</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACACATCCATGTGTCAAAAACACCAAAATCGCAGAATCACCATGGTCTGCCTCCGCTCCGAATCTCCTCACAGTGTCCTCAATCCCCTGAAAAACATTTTATAGGCAGAAGATGAAGAAGAGGACTCAAAATTTTGAGGAGTTTCTGAAGGCCACACAGTGTAAGCCGGGAAAGCATCTGAAGAAGTACTTCAAGATTGGAGATAGTGAAAAAGAGTGGAGAAGCCGGAGGCCAAAAAAAAACAAAAAATAAGCGAAAAAACTGCAGAAGAACGAAAAATTATGGCCGGAAATGCAGAAAACAAGCATTGACCAAGAAAAAACATTTTTCGAAAATGTTCCCGCTTGATTTTTGTGTTGCGACAGAGCGCGCGCTCACTTGGTTACGGTAGCAAAAAAATAATTTTTTCAGACGAAAATCGATTTTTTCGAATAAATTAAAAGAAGAATTTTGTAAAGCTTTGTTTCTGGACATTCCCAATGTTTAATGAACAACAAAGCAAAAATAAAAGCACAGTTTAACATTCAAGTTAGGTTGTTCCAAGAGATGAAAAATGTGGTTGTGAATTCGATGACCCGAAAATTTCAATTATCTATTTCATTTTCTCTAATTGAAGTCCATCCAAACCATCTAATTTGAGCTCAATTATCTAGGTTTCTGTAAGAGATATCCAAAATCCGTTAACTGATAAAATATGGGAGATATCAAAATGAACAATTTGTTAGTCAAATTTTTTTATATCTTTCAGAGGAAGCGAGATATTTGAGCTCAAAGTGCATGCAGAGGGTGGGCTTCTATTAGAGCAAGAACGGTATTTTAAAAAAACTCACTCCAAGTGATCATAGTGATTTCCAAACAACCGATGAAGACAGTCGGTGGGGCAAAGGAAAATCGCCATACAGACCGGGATCGCGCCTCTTGAACTCCTTTTGGGAATCCCATCTTTTCCACTTCACCTAAAGTTAGATCTTCACCTAAAGTTAGATCTTCACCTAAAA</canonical>
            <polymorphic>CCACACATCCATGTGTCAAAAACACCAAAATCGCAGAATCACCATGGTCTGCCTCCGCTCCGAATCTCCTCACAGTGTCCTCAATCCCCTGAAAAACATTTTATAGGCAGAAGATGAAGAAGAGGACTCAAAATTTTGAGGAGTTTCTGAAGGCCACACAGTGTAAGCCGGGAAAGCATCTGAAGAAGTACTTCAAGATTGGAGATAGTGAAAAAGAGTGGAGAAGCCGGAGGCCAAAAAAAAACAAAAAATAAGCGAAAAAACTGCAGAAGAACGAAAAATTATGGCCGGAAATGCAGAAAACAAGCATTGACCAAGAAAAAACATTTTTCGAAAATGTTCCCGCTTGATTTTTGTGTTGCGACAGAGCGCGCGCTCACTTGGTTACGGTAGCAAAAAAATAATTTTTTCAGACGAAAATCGATTTTTTCGAATAAATTAAAAGAAGAATTTTGTAAAGCTTTGTTTCTGGACATTCCCAATGTTTAATGAACAACAAWGCAAAAATAAAAGCACAGTTTAACATTCAAGTTAGGTTGTTCCAAGAGATGAAAAATGTGGTTGTGAATTCGATGACCCGAAAATTTCAATTATCTATTTCATTTTCTCTAATTGAAGTCCATCCAAACCATCTAATTTGAGCTCAATTATCTAGGTTTCTGTAAGAGATATCCAAAATCCGTTAACTGATAAAATATGGGAGATATCAAAATGAACAATTTGTTAGTCAAATTTTTTTATATCTTTCAGAGGAAGCGAGATATTTGAGCTCAAAGTGCATGCAGAGGGTGGGCTTCTATTAGAGCAAGAACGGTATTTTAAAAAAACTCACTCCAAGTGATCATAGTGATTTCCAAACAACCGATGAAGACAGTCGGTGGGGCAAAGGAAAATCGCCATACAGACCGGGATCGCGCCTCTTGAACTCCTTTTGGGAATCCCATCTTTTCCACTTCACCTAAAGTTAGATCTTCACCTAAAGTTAGATCTTCACCTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGGTTACGGTAGCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATAATTGAAATTTTCGGGTCA</pcr_primer_p2>
		<pcr_amplicon_size>215</pcr_amplicon_size>
		<canonical_amplicon>CTTGGTTACGGTAGCAAAAAAATAATTTTTTCAGACGAAAATCGATTTTTTCGAATAAATTAAAAGAAGAATTTTGTAAAGCTTTGTTTCTGGACATTCCCAATGTTTAATGAACAACAAAGCAAAAATAAAAGCACAGTTTAACATTCAAGTTAGGTTGTTCCAAGAGATGAAAAATGTGGTTGTGAATTCGATGACCCGAAAATTTCAATTAT</canonical_amplicon>
		<polymorphic_amplicon>CTTGGTTACGGTAGCAAAAAAATAATTTTTTCAGACGAAAATCGATTTTTTCGAATAAATTAAAAGAAGAATTTTGTAAAGCTTTGTTTCTGGACATTCCCAATGTTTAATGAACAACAAWGCAAAAATAAAAGCACAGTTTAACATTCAAGTTAGGTTGTTCCAAGAGATGAAAAATGTGGTTGTGAATTCGATGACCCGAAAATTTCAATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8539</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>116890</contig_pos>
        <strand>+</strand>
        <context>TTCAGAGTTA[A/G]GCCGAGGAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCGGACGAGGATGGCTGTGGTTTCTGAAGTTTTGGGATTCTTCAGAGTTA</left_flank>
        <right_flank>GCCGAGGAGTCGAAGGCTTTTTAGAGATTCTGGAGCAATTTGTAGATGAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGCCATAACTCGCTTTAAAATTGAGCATTCTCACCTCCTCCATCTGTCCCATATCCACAACTGGCGCGTTATCATCCACATCCAACACCTTGACCATGAGAATCGCCTCACTTCTGTATCCCTCATCTCCAGAAACCAACGTCAAATTGAACATCTTCTGATTCTCATCCAAACTTTCGAAATCGATTCTTTGCTTGAGTTTTAGCTCTCCAGTCATTTCATCGAAATCAAACGCCTCTTTCATTGGTCCGGAAATTTGAATTTGGCGGGAGTTCTGGGACATATTCTGGCGCGAAACTGCTGGATAGACTCCAACCACTTGACCTAATGCCAATTCTTCCTTGAGTTCCACGTGGATTTCGTTAGAGTCTCGGGTCCATGGAGATGGATAAATGGGACGGGCAGCGAGTTTTCGTTGGATTTCGAGATATTCTGGAGAGGAAATCAGGCGGACGAGGATGGCTGTGGTTTCTGAAGTTTTGGGATTCTTCAGAGTTAGGCCGAGGAGTCGAAGGCTTTTTAGAGATTCTGGAGCAATTTGTAGATGAGTTGGGGTAACTTGGATTGTCGTCTGAAACCATTTAAAAATCGACAAATCGCGACAAATACGCTCTTACCGGATCCAATGGCACCTTCCTTCCTTTCTCATCTATGCCATACATCGATTTTAAGTCCAATTTCAGACTTTTATCATCTAATTGAATATCGAAAGTCTCAGATTTCTCCCGATCGAATGTCGCTTCTAGAACTCTCGATTTTTCCAGATTTTCAGACGAATCTTGCTCATTTTCCACTGGTTCTTGTCCATTTTTTACATCGATTTCAACTAGGGTTTCTGTGAGAATCGTCCAGGTTTTTTTGTCGACTGCACCAATTCGAATGGATGATTTTCCAGTGTAGATTGGTCTGGAAAAAATGGGAAAGGGTTTAAACAAAAACTTTATAAAGAGTAGACATCTCCGTTTTTTTCAAAGTTTAAAGCTATAATTTTTTGAATTA</canonical>
            <polymorphic>TAGCCATAACTCGCTTTAAAATTGAGCATTCTCACCTCCTCCATCTGTCCCATATCCACAACTGGCGCGTTATCATCCACATCCAACACCTTGACCATGAGAATCGCCTCACTTCTGTATCCCTCATCTCCAGAAACCAACGTCAAATTGAACATCTTCTGATTCTCATCCAAACTTTCGAAATCGATTCTTTGCTTGAGTTTTAGCTCTCCAGTCATTTCATCGAAATCAAACGCCTCTTTCATTGGTCCGGAAATTTGAATTTGGCGGGAGTTCTGGGACATATTCTGGCGCGAAACTGCTGGATAGACTCCAACCACTTGACCTAATGCCAATTCTTCCTTGAGTTCCACGTGGATTTCGTTAGAGTCTCGGGTCCATGGAGATGGATAAATGGGACGGGCAGCGAGTTTTCGTTGGATTTCGAGATATTCTGGAGAGGAAATCAGGCGGACGAGGATGGCTGTGGTTTCTGAAGTTTTGGGATTCTTCAGAGTTARGCCGAGGAGTCGAAGGCTTTTTAGAGATTCTGGAGCAATTTGTAGATGAGTTGGGGTAACTTGGATTGTCGTCTGAAACCATTTAAAAATCGACAAATCGCGACAAATACGCTCTTACCGGATCCAATGGCACCTTCCTTCCTTTCTCATCTATGCCATACATCGATTTTAAGTCCAATTTCAGACTTTTATCATCTAATTGAATATCGAAAGTCTCAGATTTCTCCCGATCGAATGTCGCTTCTAGAACTCTCGATTTTTCCAGATTTTCAGACGAATCTTGCTCATTTTCCACTGGTTCTTGTCCATTTTTTACATCGATTTCAACTAGGGTTTCTGTGAGAATCGTCCAGGTTTTTTTGTCGACTGCACCAATTCGAATGGATGATTTTCCAGTGTAGATTGGTCTGGAAAAAATGGGAAAGGGTTTAAACAAAAACTTTATAAAGAGTAGACATCTCCGTTTTTTTCAAAGTTTAAAGCTATAATTTTTTGAATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>466 257 203 38 18 15 3</canonical_bands>
                <polymorphic_bands>466 257 203 53 18 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCCAACCACTTGACCTAAT</pcr_primer_p1>
		<pcr_primer_p2>TTACCCCAACTCATCTACAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTCCAACCACTTGACCTAATGCCAATTCTTCCTTGAGTTCCACGTGGATTTCGTTAGAGTCTCGGGTCCATGGAGATGGATAAATGGGACGGGCAGCGAGTTTTCGTTGGATTTCGAGATATTCTGGAGAGGAAATCAGGCGGACGAGGATGGCTGTGGTTTCTGAAGTTTTGGGATTCTTCAGAGTTAGGCCGAGGAGTCGAAGGCTTTTTAGAGATTCTGGAGCAATTTGTAGATGAGTTGGGGTAA</canonical_amplicon>
		<polymorphic_amplicon>ACTCCAACCACTTGACCTAATGCCAATTCTTCCTTGAGTTCCACGTGGATTTCGTTAGAGTCTCGGGTCCATGGAGATGGATAAATGGGACGGGCAGCGAGTTTTCGTTGGATTTCGAGATATTCTGGAGAGGAAATCAGGCGGACGAGGATGGCTGTGGTTTCTGAAGTTTTGGGATTCTTCAGAGTTARGCCGAGGAGTCGAAGGCTTTTTAGAGATTCTGGAGCAATTTGTAGATGAGTTGGGGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8540</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>116985</contig_pos>
        <strand>+</strand>
        <context>AAAAATCGAC[A/C]AATYGCGACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATGAGTTGGGGTAACTTGGATTGTCGTCTGAAACCATTTAAAAATCGAC</left_flank>
        <right_flank>AATCGCGACAAATACGCTCTTACCGGATCCAATGGCACCTTCCTTCCTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGAGAATCGCCTCACTTCTGTATCCCTCATCTCCAGAAACCAACGTCAAATTGAACATCTTCTGATTCTCATCCAAACTTTCGAAATCGATTCTTTGCTTGAGTTTTAGCTCTCCAGTCATTTCATCGAAATCAAACGCCTCTTTCATTGGTCCGGAAATTTGAATTTGGCGGGAGTTCTGGGACATATTCTGGCGCGAAACTGCTGGATAGACTCCAACCACTTGACCTAATGCCAATTCTTCCTTGAGTTCCACGTGGATTTCGTTAGAGTCTCGGGTCCATGGAGATGGATAAATGGGACGGGCAGCGAGTTTTCGTTGGATTTCGAGATATTCTGGAGAGGAAATCAGGCGGACGAGGATGGCTGTGGTTTCTGAAGTTTTGGGATTCTTCAGAGTTAGGCCGAGGAGTCGAAGGCTTTTTAGAGATTCTGGAGCAATTTGTAGATGAGTTGGGGTAACTTGGATTGTCGTCTGAAACCATTTAAAAATCGACAAATCGCGACAAATACGCTCTTACCGGATCCAATGGCACCTTCCTTCCTTTCTCATCTATGCCATACATCGATTTTAAGTCCAATTTCAGACTTTTATCATCTAATTGAATATCGAAAGTCTCAGATTTCTCCCGATCGAATGTCGCTTCTAGAACTCTCGATTTTTCCAGATTTTCAGACGAATCTTGCTCATTTTCCACTGGTTCTTGTCCATTTTTTACATCGATTTCAACTAGGGTTTCTGTGAGAATCGTCCAGGTTTTTTTGTCGACTGCACCAATTCGAATGGATGATTTTCCAGTGTAGATTGGTCTGGAAAAAATGGGAAAGGGTTTAAACAAAAACTTTATAAAGAGTAGACATCTCCGTTTTTTTCAAAGTTTAAAGCTATAATTTTTTGAATTATGATGCTGGAAAATCGCTCATATCTCGAAAACGATGTTAGCTATCAAAAAATTGCTAACTACTTAATTGCTCAGCATAAAATTTTGGTCAACTTC</canonical>
            <polymorphic>CATGAGAATCGCCTCACTTCTGTATCCCTCATCTCCAGAAACCAACGTCAAATTGAACATCTTCTGATTCTCATCCAAACTTTCGAAATCGATTCTTTGCTTGAGTTTTAGCTCTCCAGTCATTTCATCGAAATCAAACGCCTCTTTCATTGGTCCGGAAATTTGAATTTGGCGGGAGTTCTGGGACATATTCTGGCGCGAAACTGCTGGATAGACTCCAACCACTTGACCTAATGCCAATTCTTCCTTGAGTTCCACGTGGATTTCGTTAGAGTCTCGGGTCCATGGAGATGGATAAATGGGACGGGCAGCGAGTTTTCGTTGGATTTCGAGATATTCTGGAGAGGAAATCAGGCGGACGAGGATGGCTGTGGTTTCTGAAGTTTTGGGATTCTTCAGAGTTAGGCCGAGGAGTCGAAGGCTTTTTAGAGATTCTGGAGCAATTTGTAGATGAGTTGGGGTAACTTGGATTGTCGTCTGAAACCATTTAAAAATCGACMAATCGCGACAAATACGCTCTTACCGGATCCAATGGCACCTTCCTTCCTTTCTCATCTATGCCATACATCGATTTTAAGTCCAATTTCAGACTTTTATCATCTAATTGAATATCGAAAGTCTCAGATTTCTCCCGATCGAATGTCGCTTCTAGAACTCTCGATTTTTCCAGATTTTCAGACGAATCTTGCTCATTTTCCACTGGTTCTTGTCCATTTTTTACATCGATTTCAACTAGGGTTTCTGTGAGAATCGTCCAGGTTTTTTTGTCGACTGCACCAATTCGAATGGATGATTTTCCAGTGTAGATTGGTCTGGAAAAAATGGGAAAGGGTTTAAACAAAAACTTTATAAAGAGTAGACATCTCCGTTTTTTTCAAAGTTTAAAGCTATAATTTTTTGAATTATGATGCTGGAAAATCGCTCATATCTCGAAAACGATGTTAGCTATCAAAAAATTGCTAACTACTTAATTGCTCAGCATAAAATTTTGGTCAACTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCGAAGGCTTTTTAGAGATT</pcr_primer_p1>
		<pcr_primer_p2>GAGAGTTCTAGAAGCGACATTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGTCGAAGGCTTTTTAGAGATTCTGGAGCAATTTGTAGATGAGTTGGGGTAACTTGGATTGTCGTCTGAAACCATTTAAAAATCGACAAATCGCGACAAATACGCTCTTACCGGATCCAATGGCACCTTCCTTCCTTTCTCATCTATGCCATACATCGATTTTAAGTCCAATTTCAGACTTTTATCATCTAATTGAATATCGAAAGTCTCAGATTTCTCCCGATCGAATGTCGCTTCTAGAACTCTC</canonical_amplicon>
		<polymorphic_amplicon>AGTCGAAGGCTTTTTAGAGATTCTGGAGCAATTTGTAGATGAGTTGGGGTAACTTGGATTGTCGTCTGAAACCATTTAAAAATCGACMAATCGCGACAAATACGCTCTTACCGGATCCAATGGCACCTTCCTTCCTTTCTCATCTATGCCATACATCGATTTTAAGTCCAATTTCAGACTTTTATCATCTAATTGAATATCGAAAGTCTCAGATTTCTCCCGATCGAATGTCGCTTCTAGAACTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8541</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>116989</contig_pos>
        <strand>+</strand>
        <context>ATCGACMAAT[C/T]GCGACAAATR</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTTGGGGTAACTTGGATTGTCGTCTGAAACCATTTAAAAATCGACAAAT</left_flank>
        <right_flank>GCGACAAATACGCTCTTACCGGATCCAATGGCACCTTCCTTCCTTTCTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAATCGCCTCACTTCTGTATCCCTCATCTCCAGAAACCAACGTCAAATTGAACATCTTCTGATTCTCATCCAAACTTTCGAAATCGATTCTTTGCTTGAGTTTTAGCTCTCCAGTCATTTCATCGAAATCAAACGCCTCTTTCATTGGTCCGGAAATTTGAATTTGGCGGGAGTTCTGGGACATATTCTGGCGCGAAACTGCTGGATAGACTCCAACCACTTGACCTAATGCCAATTCTTCCTTGAGTTCCACGTGGATTTCGTTAGAGTCTCGGGTCCATGGAGATGGATAAATGGGACGGGCAGCGAGTTTTCGTTGGATTTCGAGATATTCTGGAGAGGAAATCAGGCGGACGAGGATGGCTGTGGTTTCTGAAGTTTTGGGATTCTTCAGAGTTAGGCCGAGGAGTCGAAGGCTTTTTAGAGATTCTGGAGCAATTTGTAGATGAGTTGGGGTAACTTGGATTGTCGTCTGAAACCATTTAAAAATCGACAAATCGCGACAAATACGCTCTTACCGGATCCAATGGCACCTTCCTTCCTTTCTCATCTATGCCATACATCGATTTTAAGTCCAATTTCAGACTTTTATCATCTAATTGAATATCGAAAGTCTCAGATTTCTCCCGATCGAATGTCGCTTCTAGAACTCTCGATTTTTCCAGATTTTCAGACGAATCTTGCTCATTTTCCACTGGTTCTTGTCCATTTTTTACATCGATTTCAACTAGGGTTTCTGTGAGAATCGTCCAGGTTTTTTTGTCGACTGCACCAATTCGAATGGATGATTTTCCAGTGTAGATTGGTCTGGAAAAAATGGGAAAGGGTTTAAACAAAAACTTTATAAAGAGTAGACATCTCCGTTTTTTTCAAAGTTTAAAGCTATAATTTTTTGAATTATGATGCTGGAAAATCGCTCATATCTCGAAAACGATGTTAGCTATCAAAAAATTGCTAACTACTTAATTGCTCAGCATAAAATTTTGGTCAACTTCATAG</canonical>
            <polymorphic>AGAATCGCCTCACTTCTGTATCCCTCATCTCCAGAAACCAACGTCAAATTGAACATCTTCTGATTCTCATCCAAACTTTCGAAATCGATTCTTTGCTTGAGTTTTAGCTCTCCAGTCATTTCATCGAAATCAAACGCCTCTTTCATTGGTCCGGAAATTTGAATTTGGCGGGAGTTCTGGGACATATTCTGGCGCGAAACTGCTGGATAGACTCCAACCACTTGACCTAATGCCAATTCTTCCTTGAGTTCCACGTGGATTTCGTTAGAGTCTCGGGTCCATGGAGATGGATAAATGGGACGGGCAGCGAGTTTTCGTTGGATTTCGAGATATTCTGGAGAGGAAATCAGGCGGACGAGGATGGCTGTGGTTTCTGAAGTTTTGGGATTCTTCAGAGTTAGGCCGAGGAGTCGAAGGCTTTTTAGAGATTCTGGAGCAATTTGTAGATGAGTTGGGGTAACTTGGATTGTCGTCTGAAACCATTTAAAAATCGACAAATYGCGACAAATACGCTCTTACCGGATCCAATGGCACCTTCCTTCCTTTCTCATCTATGCCATACATCGATTTTAAGTCCAATTTCAGACTTTTATCATCTAATTGAATATCGAAAGTCTCAGATTTCTCCCGATCGAATGTCGCTTCTAGAACTCTCGATTTTTCCAGATTTTCAGACGAATCTTGCTCATTTTCCACTGGTTCTTGTCCATTTTTTACATCGATTTCAACTAGGGTTTCTGTGAGAATCGTCCAGGTTTTTTTGTCGACTGCACCAATTCGAATGGATGATTTTCCAGTGTAGATTGGTCTGGAAAAAATGGGAAAGGGTTTAAACAAAAACTTTATAAAGAGTAGACATCTCCGTTTTTTTCAAAGTTTAAAGCTATAATTTTTTGAATTATGATGCTGGAAAATCGCTCATATCTCGAAAACGATGTTAGCTATCAAAAAATTGCTAACTACTTAATTGCTCAGCATAAAATTTTGGTCAACTTCATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 307 194</canonical_bands>
                <polymorphic_bands>806 194</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGCGA</site>
                <isoschizomers>
                    <enzyme>Bsp68I</enzyme>
                    <enzyme>NruI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>175 146 127 120 116 96 75 69 31 18 10 9 8</canonical_bands>
                <polymorphic_bands>196 175 146 120 116 96 75 31 18 10 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTCGAAGGCTTTTTAGAGATT</pcr_primer_p1>
		<pcr_primer_p2>GAGAGTTCTAGAAGCGACATTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGTCGAAGGCTTTTTAGAGATTCTGGAGCAATTTGTAGATGAGTTGGGGTAACTTGGATTGTCGTCTGAAACCATTTAAAAATCGACAAATCGCGACAAATACGCTCTTACCGGATCCAATGGCACCTTCCTTCCTTTCTCATCTATGCCATACATCGATTTTAAGTCCAATTTCAGACTTTTATCATCTAATTGAATATCGAAAGTCTCAGATTTCTCCCGATCGAATGTCGCTTCTAGAACTCTC</canonical_amplicon>
		<polymorphic_amplicon>AGTCGAAGGCTTTTTAGAGATTCTGGAGCAATTTGTAGATGAGTTGGGGTAACTTGGATTGTCGTCTGAAACCATTTAAAAATCGACAAATYGCGACAAATACGCTCTTACCGGATCCAATGGCACCTTCCTTCCTTTCTCATCTATGCCATACATCGATTTTAAGTCCAATTTCAGACTTTTATCATCTAATTGAATATCGAAAGTCTCAGATTTCTCCCGATCGAATGTCGCTTCTAGAACTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8542</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>116999</contig_pos>
        <strand>+</strand>
        <context>YGCGACAAAT[A/G]CGCYCTTACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTTGGATTGTCGTCTGAAACCATTTAAAAATCGACAAATCGCGACAAAT</left_flank>
        <right_flank>CGCTCTTACCGGATCCAATGGCACCTTCCTTCCTTTCTCATCTATGCCAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTTCTGTATCCCTCATCTCCAGAAACCAACGTCAAATTGAACATCTTCTGATTCTCATCCAAACTTTCGAAATCGATTCTTTGCTTGAGTTTTAGCTCTCCAGTCATTTCATCGAAATCAAACGCCTCTTTCATTGGTCCGGAAATTTGAATTTGGCGGGAGTTCTGGGACATATTCTGGCGCGAAACTGCTGGATAGACTCCAACCACTTGACCTAATGCCAATTCTTCCTTGAGTTCCACGTGGATTTCGTTAGAGTCTCGGGTCCATGGAGATGGATAAATGGGACGGGCAGCGAGTTTTCGTTGGATTTCGAGATATTCTGGAGAGGAAATCAGGCGGACGAGGATGGCTGTGGTTTCTGAAGTTTTGGGATTCTTCAGAGTTAGGCCGAGGAGTCGAAGGCTTTTTAGAGATTCTGGAGCAATTTGTAGATGAGTTGGGGTAACTTGGATTGTCGTCTGAAACCATTTAAAAATCGACAAATCGCGACAAATACGCTCTTACCGGATCCAATGGCACCTTCCTTCCTTTCTCATCTATGCCATACATCGATTTTAAGTCCAATTTCAGACTTTTATCATCTAATTGAATATCGAAAGTCTCAGATTTCTCCCGATCGAATGTCGCTTCTAGAACTCTCGATTTTTCCAGATTTTCAGACGAATCTTGCTCATTTTCCACTGGTTCTTGTCCATTTTTTACATCGATTTCAACTAGGGTTTCTGTGAGAATCGTCCAGGTTTTTTTGTCGACTGCACCAATTCGAATGGATGATTTTCCAGTGTAGATTGGTCTGGAAAAAATGGGAAAGGGTTTAAACAAAAACTTTATAAAGAGTAGACATCTCCGTTTTTTTCAAAGTTTAAAGCTATAATTTTTTGAATTATGATGCTGGAAAATCGCTCATATCTCGAAAACGATGTTAGCTATCAAAAAATTGCTAACTACTTAATTGCTCAGCATAAAATTTTGGTCAACTTCATAGTTTACAACTT</canonical>
            <polymorphic>CACTTCTGTATCCCTCATCTCCAGAAACCAACGTCAAATTGAACATCTTCTGATTCTCATCCAAACTTTCGAAATCGATTCTTTGCTTGAGTTTTAGCTCTCCAGTCATTTCATCGAAATCAAACGCCTCTTTCATTGGTCCGGAAATTTGAATTTGGCGGGAGTTCTGGGACATATTCTGGCGCGAAACTGCTGGATAGACTCCAACCACTTGACCTAATGCCAATTCTTCCTTGAGTTCCACGTGGATTTCGTTAGAGTCTCGGGTCCATGGAGATGGATAAATGGGACGGGCAGCGAGTTTTCGTTGGATTTCGAGATATTCTGGAGAGGAAATCAGGCGGACGAGGATGGCTGTGGTTTCTGAAGTTTTGGGATTCTTCAGAGTTAGGCCGAGGAGTCGAAGGCTTTTTAGAGATTCTGGAGCAATTTGTAGATGAGTTGGGGTAACTTGGATTGTCGTCTGAAACCATTTAAAAATCGACAAATCGCGACAAATRCGCTCTTACCGGATCCAATGGCACCTTCCTTCCTTTCTCATCTATGCCATACATCGATTTTAAGTCCAATTTCAGACTTTTATCATCTAATTGAATATCGAAAGTCTCAGATTTCTCCCGATCGAATGTCGCTTCTAGAACTCTCGATTTTTCCAGATTTTCAGACGAATCTTGCTCATTTTCCACTGGTTCTTGTCCATTTTTTACATCGATTTCAACTAGGGTTTCTGTGAGAATCGTCCAGGTTTTTTTGTCGACTGCACCAATTCGAATGGATGATTTTCCAGTGTAGATTGGTCTGGAAAAAATGGGAAAGGGTTTAAACAAAAACTTTATAAAGAGTAGACATCTCCGTTTTTTTCAAAGTTTAAAGCTATAATTTTTTGAATTATGATGCTGGAAAATCGCTCATATCTCGAAAACGATGTTAGCTATCAAAAAATTGCTAACTACTTAATTGCTCAGCATAAAATTTTGGTCAACTTCATAGTTTACAACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCGAAGGCTTTTTAGAGATT</pcr_primer_p1>
		<pcr_primer_p2>GAGAGTTCTAGAAGCGACATTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGTCGAAGGCTTTTTAGAGATTCTGGAGCAATTTGTAGATGAGTTGGGGTAACTTGGATTGTCGTCTGAAACCATTTAAAAATCGACAAATCGCGACAAATACGCTCTTACCGGATCCAATGGCACCTTCCTTCCTTTCTCATCTATGCCATACATCGATTTTAAGTCCAATTTCAGACTTTTATCATCTAATTGAATATCGAAAGTCTCAGATTTCTCCCGATCGAATGTCGCTTCTAGAACTCTC</canonical_amplicon>
		<polymorphic_amplicon>AGTCGAAGGCTTTTTAGAGATTCTGGAGCAATTTGTAGATGAGTTGGGGTAACTTGGATTGTCGTCTGAAACCATTTAAAAATCGACAAATCGCGACAAATRCGCTCTTACCGGATCCAATGGCACCTTCCTTCCTTTCTCATCTATGCCATACATCGATTTTAAGTCCAATTTCAGACTTTTATCATCTAATTGAATATCGAAAGTCTCAGATTTCTCCCGATCGAATGTCGCTTCTAGAACTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8543</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>117003</contig_pos>
        <strand>+</strand>
        <context>ACAAATRCGC[C/T]CTTACCGGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGATTGTCGTCTGAAACCATTTAAAAATCGACAAATCGCGACAAATACGC</left_flank>
        <right_flank>CTTACCGGATCCAATGGCACCTTCCTTCCTTTCTCATCTATGCCATACAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGTATCCCTCATCTCCAGAAACCAACGTCAAATTGAACATCTTCTGATTCTCATCCAAACTTTCGAAATCGATTCTTTGCTTGAGTTTTAGCTCTCCAGTCATTTCATCGAAATCAAACGCCTCTTTCATTGGTCCGGAAATTTGAATTTGGCGGGAGTTCTGGGACATATTCTGGCGCGAAACTGCTGGATAGACTCCAACCACTTGACCTAATGCCAATTCTTCCTTGAGTTCCACGTGGATTTCGTTAGAGTCTCGGGTCCATGGAGATGGATAAATGGGACGGGCAGCGAGTTTTCGTTGGATTTCGAGATATTCTGGAGAGGAAATCAGGCGGACGAGGATGGCTGTGGTTTCTGAAGTTTTGGGATTCTTCAGAGTTAGGCCGAGGAGTCGAAGGCTTTTTAGAGATTCTGGAGCAATTTGTAGATGAGTTGGGGTAACTTGGATTGTCGTCTGAAACCATTTAAAAATCGACAAATCGCGACAAATACGCTCTTACCGGATCCAATGGCACCTTCCTTCCTTTCTCATCTATGCCATACATCGATTTTAAGTCCAATTTCAGACTTTTATCATCTAATTGAATATCGAAAGTCTCAGATTTCTCCCGATCGAATGTCGCTTCTAGAACTCTCGATTTTTCCAGATTTTCAGACGAATCTTGCTCATTTTCCACTGGTTCTTGTCCATTTTTTACATCGATTTCAACTAGGGTTTCTGTGAGAATCGTCCAGGTTTTTTTGTCGACTGCACCAATTCGAATGGATGATTTTCCAGTGTAGATTGGTCTGGAAAAAATGGGAAAGGGTTTAAACAAAAACTTTATAAAGAGTAGACATCTCCGTTTTTTTCAAAGTTTAAAGCTATAATTTTTTGAATTATGATGCTGGAAAATCGCTCATATCTCGAAAACGATGTTAGCTATCAAAAAATTGCTAACTACTTAATTGCTCAGCATAAAATTTTGGTCAACTTCATAGTTTACAACTTTTTT</canonical>
            <polymorphic>TCTGTATCCCTCATCTCCAGAAACCAACGTCAAATTGAACATCTTCTGATTCTCATCCAAACTTTCGAAATCGATTCTTTGCTTGAGTTTTAGCTCTCCAGTCATTTCATCGAAATCAAACGCCTCTTTCATTGGTCCGGAAATTTGAATTTGGCGGGAGTTCTGGGACATATTCTGGCGCGAAACTGCTGGATAGACTCCAACCACTTGACCTAATGCCAATTCTTCCTTGAGTTCCACGTGGATTTCGTTAGAGTCTCGGGTCCATGGAGATGGATAAATGGGACGGGCAGCGAGTTTTCGTTGGATTTCGAGATATTCTGGAGAGGAAATCAGGCGGACGAGGATGGCTGTGGTTTCTGAAGTTTTGGGATTCTTCAGAGTTAGGCCGAGGAGTCGAAGGCTTTTTAGAGATTCTGGAGCAATTTGTAGATGAGTTGGGGTAACTTGGATTGTCGTCTGAAACCATTTAAAAATCGACAAATCGCGACAAATACGCYCTTACCGGATCCAATGGCACCTTCCTTCCTTTCTCATCTATGCCATACATCGATTTTAAGTCCAATTTCAGACTTTTATCATCTAATTGAATATCGAAAGTCTCAGATTTCTCCCGATCGAATGTCGCTTCTAGAACTCTCGATTTTTCCAGATTTTCAGACGAATCTTGCTCATTTTCCACTGGTTCTTGTCCATTTTTTACATCGATTTCAACTAGGGTTTCTGTGAGAATCGTCCAGGTTTTTTTGTCGACTGCACCAATTCGAATGGATGATTTTCCAGTGTAGATTGGTCTGGAAAAAATGGGAAAGGGTTTAAACAAAAACTTTATAAAGAGTAGACATCTCCGTTTTTTTCAAAGTTTAAAGCTATAATTTTTTGAATTATGATGCTGGAAAATCGCTCATATCTCGAAAACGATGTTAGCTATCAAAAAATTGCTAACTACTTAATTGCTCAGCATAAAATTTTGGTCAACTTCATAGTTTACAACTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCGAAGGCTTTTTAGAGATT</pcr_primer_p1>
		<pcr_primer_p2>GAGAGTTCTAGAAGCGACATTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGTCGAAGGCTTTTTAGAGATTCTGGAGCAATTTGTAGATGAGTTGGGGTAACTTGGATTGTCGTCTGAAACCATTTAAAAATCGACAAATCGCGACAAATACGCTCTTACCGGATCCAATGGCACCTTCCTTCCTTTCTCATCTATGCCATACATCGATTTTAAGTCCAATTTCAGACTTTTATCATCTAATTGAATATCGAAAGTCTCAGATTTCTCCCGATCGAATGTCGCTTCTAGAACTCTC</canonical_amplicon>
		<polymorphic_amplicon>AGTCGAAGGCTTTTTAGAGATTCTGGAGCAATTTGTAGATGAGTTGGGGTAACTTGGATTGTCGTCTGAAACCATTTAAAAATCGACAAATCGCGACAAATACGCYCTTACCGGATCCAATGGCACCTTCCTTCCTTTCTCATCTATGCCATACATCGATTTTAAGTCCAATTTCAGACTTTTATCATCTAATTGAATATCGAAAGTCTCAGATTTCTCCCGATCGAATGTCGCTTCTAGAACTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8544</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>117151</contig_pos>
        <strand>+</strand>
        <context>TCTCGATTTT[A/T]CCAGATTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGTCTCAGATTTCTCCCGATCGAATGTCGCTTCTAGAACTCTCGATTTT</left_flank>
        <right_flank>CCAGATTTTCAGACGAATCTTGCTCATTTTCCACTGGTTCTTGTCCATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTGGCGGGAGTTCTGGGACATATTCTGGCGCGAAACTGCTGGATAGACTCCAACCACTTGACCTAATGCCAATTCTTCCTTGAGTTCCACGTGGATTTCGTTAGAGTCTCGGGTCCATGGAGATGGATAAATGGGACGGGCAGCGAGTTTTCGTTGGATTTCGAGATATTCTGGAGAGGAAATCAGGCGGACGAGGATGGCTGTGGTTTCTGAAGTTTTGGGATTCTTCAGAGTTAGGCCGAGGAGTCGAAGGCTTTTTAGAGATTCTGGAGCAATTTGTAGATGAGTTGGGGTAACTTGGATTGTCGTCTGAAACCATTTAAAAATCGACAAATCGCGACAAATACGCTCTTACCGGATCCAATGGCACCTTCCTTCCTTTCTCATCTATGCCATACATCGATTTTAAGTCCAATTTCAGACTTTTATCATCTAATTGAATATCGAAAGTCTCAGATTTCTCCCGATCGAATGTCGCTTCTAGAACTCTCGATTTTTCCAGATTTTCAGACGAATCTTGCTCATTTTCCACTGGTTCTTGTCCATTTTTTACATCGATTTCAACTAGGGTTTCTGTGAGAATCGTCCAGGTTTTTTTGTCGACTGCACCAATTCGAATGGATGATTTTCCAGTGTAGATTGGTCTGGAAAAAATGGGAAAGGGTTTAAACAAAAACTTTATAAAGAGTAGACATCTCCGTTTTTTTCAAAGTTTAAAGCTATAATTTTTTGAATTATGATGCTGGAAAATCGCTCATATCTCGAAAACGATGTTAGCTATCAAAAAATTGCTAACTACTTAATTGCTCAGCATAAAATTTTGGTCAACTTCATAGTTTACAACTTTTTTTCAGCTTTTGTAGTTTTTGAGATATGCGCTTTTATGGTGGCTCAGATGCCTTGCCACCCTATCGTGTCTGCGCCTCTTTAAAAGCATATCTCACGAACCAAAAAAAAACTATCAAAAAGTGGTTAATTGCTAAATTGCTCAATATAAG</canonical>
            <polymorphic>ATTTGGCGGGAGTTCTGGGACATATTCTGGCGCGAAACTGCTGGATAGACTCCAACCACTTGACCTAATGCCAATTCTTCCTTGAGTTCCACGTGGATTTCGTTAGAGTCTCGGGTCCATGGAGATGGATAAATGGGACGGGCAGCGAGTTTTCGTTGGATTTCGAGATATTCTGGAGAGGAAATCAGGCGGACGAGGATGGCTGTGGTTTCTGAAGTTTTGGGATTCTTCAGAGTTAGGCCGAGGAGTCGAAGGCTTTTTAGAGATTCTGGAGCAATTTGTAGATGAGTTGGGGTAACTTGGATTGTCGTCTGAAACCATTTAAAAATCGACAAATCGCGACAAATACGCTCTTACCGGATCCAATGGCACCTTCCTTCCTTTCTCATCTATGCCATACATCGATTTTAAGTCCAATTTCAGACTTTTATCATCTAATTGAATATCGAAAGTCTCAGATTTCTCCCGATCGAATGTCGCTTCTAGAACTCTCGATTTTWCCAGATTTTCAGACGAATCTTGCTCATTTTCCACTGGTTCTTGTCCATTTTTTACATCGATTTCAACTAGGGTTTCTGTGAGAATCGTCCAGGTTTTTTTGTCGACTGCACCAATTCGAATGGATGATTTTCCAGTGTAGATTGGTCTGGAAAAAATGGGAAAGGGTTTAAACAAAAACTTTATAAAGAGTAGACATCTCCGTTTTTTTCAAAGTTTAAAGCTATAATTTTTTGAATTATGATGCTGGAAAATCGCTCATATCTCGAAAACGATGTTAGCTATCAAAAAATTGCTAACTACTTAATTGCTCAGCATAAAATTTTGGTCAACTTCATAGTTTACAACTTTTTTTCAGCTTTTGTAGTTTTTGAGATATGCGCTTTTATGGTGGCTCAGATGCCTTGCCACCCTATCGTGTCTGCGCCTCTTTAAAAGCATATCTCACGAACCAAAAAAAAACTATCAAAAAGTGGTTAATTGCTAAATTGCTCAATATAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>181 164 146 127 116 96 69 56 18 10 9 8</canonical_bands>
                <polymorphic_bands>181 164 156 127 116 96 69 56 18 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAATTGAATATCGAAAGTCTCAG</pcr_primer_p1>
		<pcr_primer_p2>AAAGTTTTTGTTTAAACCCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTAATTGAATATCGAAAGTCTCAGATTTCTCCCGATCGAATGTCGCTTCTAGAACTCTCGATTTTTCCAGATTTTCAGACGAATCTTGCTCATTTTCCACTGGTTCTTGTCCATTTTTTACATCGATTTCAACTAGGGTTTCTGTGAGAATCGTCCAGGTTTTTTTGTCGACTGCACCAATTCGAATGGATGATTTTCCAGTGTAGATTGGTCTGGAAAAAATGGGAAAGGGTTTAAACAAAAACTTT</canonical_amplicon>
		<polymorphic_amplicon>CTAATTGAATATCGAAAGTCTCAGATTTCTCCCGATCGAATGTCGCTTCTAGAACTCTCGATTTTWCCAGATTTTCAGACGAATCTTGCTCATTTTCCACTGGTTCTTGTCCATTTTTTACATCGATTTCAACTAGGGTTTCTGTGAGAATCGTCCAGGTTTTTTTGTCGACTGCACCAATTCGAATGGATGATTTTCCAGTGTAGATTGGTCTGGAAAAAATGGGAAAGGGTTTAAACAAAAACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8545</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>119211</contig_pos>
        <strand></strand>
        <context>ATGTTCATCT[A/C]AATGTTCATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCAATTCAAGCCAATCAAAATAGAAATCAGTTCTAATAAATGTTCATCT</left_flank>
        <right_flank>AATGTTCATTCATCTCGATTCTCCACTGGATTCTCCTAACTATGTTTTTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAGTTCATCAATTTTTTTTTGTTTTTTAAGTGTAAAATTTTATGCTGAGCAATTCATCCGTTAACAACTTTTTAATAGCTTTCTTGGCTTTTGAGATAAGCGCCTTAAAAGAGACGCAGGCACTAGGGCAGCTGCGTTTTCAAAGGCGCATATCTCAAAAACTACGGTAGATAGAAAAAGATGTAAACTACAAAAATATGTAAAATTTTATGCTGAGCAATTTAATAGCTGACAGTTTTTTGATAGCTTTTTTTGTTCTTGAGATATGAGCGTTTGAAAAAGAAAGCATCCAATTTCTCTCGAAAACTATGTTTTTAGCTTGAAAAGTATAGCTAGCTTTTGCCGCGTGATTTTACTCAAAAAATCCTTTTTTTCAGCCTTGTTAAAAAATATTTTTCTCGTGAATCCCCAATCGCCCGGTTATTCAATTAACAAAAAACCCAATTTATCAATTCAAGCCAATCAAAATAGAAATCAGTTCTAATAAATGTTCATCTAAATGTTCATTCATCTCGATTCTCCACTGGATTCTCCTAACTATGTTTTTTCCTTGTTAAGTATGCTTTCAAATTACAAGTGAGTTTGATTTTGAGAAAAAAAAAGATTTTCATTAAAATTTTTTCTGATTTCAGACAATCGCAACTAATCTTCTTCTAAACATTGGAGTTCTGCTTTTGTGTCCTTAAAAAATCGTCACAACCCTTTCTAATTTTTATTGAATAATAAAATAGTTTGAATCTAAATTTTTGTATTTTTCAATTAAATAGGTGTACTATTTTCTAAGTTAATCACCTTTTGTTAGACTTGAATAGATGCAGACAAAAATACAATTTAGTTTCACTATCTTCCACAAAATTTAAAGCGCATATCTCAAAAACTGCGCTAGCTGAAAAAAAAATACAATATTGTGTGAAATTTTATGCTGAGCAATTAACTAGTTAACATTTTTCTGATCGCTTTTTTGCTTTTTGAGACATGCGCCTTTAAAAGAGACGCAG</canonical>
            <polymorphic>ATTAGTTCATCAATTTTTTTTTGTTTTTTAAGTGTAAAATTTTATGCTGAGCAATTCATCCGTTAACAACTTTTTAATAGCTTTCTTGGCTTTTGAGATAAGCGCCTTAAAAGAGACGCAGGCACTAGGGCAGCTGCGTTTTCAAAGGCGCATATCTCAAAAACTACGGTAGATAGAAAAAGATGTAAACTACAAAAATATGTAAAATTTTATGCTGAGCAATTTAATAGCTGACAGTTTTTTGATAGCTTTTTTTGTTCTTGAGATATGAGCGTTTGAAAAAGAAAGCATCCAATTTCTCTCGAAAACTATGTTTTTAGCTTGAAAAGTATAGCTAGCTTTTGCCGCGTGATTTTACTCAAAAAATCCTTTTTTTCAGCCTTGTTAAAAAATATTTTTCTCGTGAATCCCCAATCGCCCGGTTATTCAATTAACAAAAAACCCAATTTATCAATTCAAGCCAATCAAAATAGAAATCAGTTCTAATAAATGTTCATCTMAATGTTCATTCATCTCGATTCTCCACTGGATTCTCCTAACTATGTTTTTTCCTTGTTAAGTATGCTTTCAAATTACAAGTGAGTTTGATTTTGAGAAAAAAAAAGATTTTCATTAAAATTTTTTCTGATTTCAGACAATCGCAACTAATCTTCTTCTAAACATTGGAGTTCTGCTTTTGTGTCCTTAAAAAATCGTCACAACCCTTTCTAATTTTTATTGAATAATAAAATAGTTTGAATCTAAATTTTTGTATTTTTCAATTAAATAGGTGTACTATTTTCTAAGTTAATCACCTTTTGTTAGACTTGAATAGATGCAGACAAAAATACAATTTAGTTTCACTATCTTCCACAAAATTTAAAGCGCATATCTCAAAAACTGCGCTAGCTGAAAAAAAAATACAATATTGTGTGAAATTTTATGCTGAGCAATTAACTAGTTAACATTTTTCTGATCGCTTTTTTGCTTTTTGAGACATGCGCCTTTAAAAGAGACGCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACCCAATTTATCAATTCAAG</pcr_primer_p1>
		<pcr_primer_p2>TTAAGGACACAAAAGCAGAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACCCAATTTATCAATTCAAGCCAATCAAAATAGAAATCAGTTCTAATAAATGTTCATCTAAATGTTCATTCATCTCGATTCTCCACTGGATTCTCCTAACTATGTTTTTTCCTTGTTAAGTATGCTTTCAAATTACAAGTGAGTTTGATTTTGAGAAAAAAAAAGATTTTCATTAAAATTTTTTCTGATTTCAGACAATCGCAACTAATCTTCTTCTAAACATTGGAGTTCTGCTTTTGTGTCCTTAA</canonical_amplicon>
		<polymorphic_amplicon>AAACCCAATTTATCAATTCAAGCCAATCAAAATAGAAATCAGTTCTAATAAATGTTCATCTMAATGTTCATTCATCTCGATTCTCCACTGGATTCTCCTAACTATGTTTTTTCCTTGTTAAGTATGCTTTCAAATTACAAGTGAGTTTGATTTTGAGAAAAAAAAAGATTTTCATTAAAATTTTTTCTGATTTCAGACAATCGCAACTAATCTTCTTCTAAACATTGGAGTTCTGCTTTTGTGTCCTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8546</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>119098</contig_pos>
        <strand></strand>
        <context>CAGCCTTKTT[A/T]AAAAATATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGCTTTTGCCGCGTGATTTTACTCAAAAAATCCTTTTTTTCAGCCTTGTT</left_flank>
        <right_flank>AAAAATATTTTTCTCGTGAATCCCCAATCGCCCGGTTATTCAATTAACAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATATATATATATGTTTGTATCAAAAAAAGCACAAAGGATGGTAAACATGATTTTTCGGCTGACAAGAAGAATTTTTTTATAGTTATTGAACTATTTTTCAATGAAACAATGAATTAGTTCATCAATTTTTTTTTGTTTTTTAAGTGTAAAATTTTATGCTGAGCAATTCATCCGTTAACAACTTTTTAATAGCTTTCTTGGCTTTTGAGATAAGCGCCTTAAAAGAGACGCAGGCACTAGGGCAGCTGCGTTTTCAAAGGCGCATATCTCAAAAACTACGGTAGATAGAAAAAGATGTAAACTACAAAAATATGTAAAATTTTATGCTGAGCAATTTAATAGCTGACAGTTTTTTGATAGCTTTTTTTGTTCTTGAGATATGAGCGTTTGAAAAAGAAAGCATCCAATTTCTCTCGAAAACTATGTTTTTAGCTTGAAAAGTATAGCTAGCTTTTGCCGCGTGATTTTACTCAAAAAATCCTTTTTTTCAGCCTTGTTAAAAAATATTTTTCTCGTGAATCCCCAATCGCCCGGTTATTCAATTAACAAAAAACCCAATTTATCAATTCAAGCCAATCAAAATAGAAATCAGTTCTAATAAATGTTCATCTAAATGTTCATTCATCTCGATTCTCCACTGGATTCTCCTAACTATGTTTTTTCCTTGTTAAGTATGCTTTCAAATTACAAGTGAGTTTGATTTTGAGAAAAAAAAAGATTTTCATTAAAATTTTTTCTGATTTCAGACAATCGCAACTAATCTTCTTCTAAACATTGGAGTTCTGCTTTTGTGTCCTTAAAAAATCGTCACAACCCTTTCTAATTTTTATTGAATAATAAAATAGTTTGAATCTAAATTTTTGTATTTTTCAATTAAATAGGTGTACTATTTTCTAAGTTAATCACCTTTTGTTAGACTTGAATAGATGCAGACAAAAATACAATTTAGTTTCACTATCTTCCACAAAATTTAAAGCGCATATCTCAAAAACTGCGCTA</canonical>
            <polymorphic>TATATATATATATGTTTGTATCAAAAAAAGCACAAAGGATGGTAAACATGATTTTTCGGCTGACAAGAAGAATTTTTTTATAGTTATTGAACTATTTTTCAATGAAACAATGAATTAGTTCATCAATTTTTTTTTGTTTTTTAAGTGTAAAATTTTATGCTGAGCAATTCATCCGTTAACAACTTTTTAATAGCTTTCTTGGCTTTTGAGATAAGCGCCTTAAAAGAGACGCAGGCACTAGGGCAGCTGCGTTTTCAAAGGCGCATATCTCAAAAACTACGGTAGATAGAAAAAGATGTAAACTACAAAAATATGTAAAATTTTATGCTGAGCAATTTAATAGCTGACAGTTTTTTGATAGCTTTTTTTGTTCTTGAGATATGAGCGTTTGAAAAAGAAAGCATCCAATTTCTCTCGAAAACTATGTTTTTAGCTTGAAAAGTATAGCTAGCTTTTGCCGCGTGATTTTACTCAAAAAATCCTTTTTTTCAGCCTTGTTWAAAAATATTTTTCTCGTGAATCCCCAATCGCCCGGTTATTCAATTAACAAAAAACCCAATTTATCAATTCAAGCCAATCAAAATAGAAATCAGTTCTAATAAATGTTCATCTAAATGTTCATTCATCTCGATTCTCCACTGGATTCTCCTAACTATGTTTTTTCCTTGTTAAGTATGCTTTCAAATTACAAGTGAGTTTGATTTTGAGAAAAAAAAAGATTTTCATTAAAATTTTTTCTGATTTCAGACAATCGCAACTAATCTTCTTCTAAACATTGGAGTTCTGCTTTTGTGTCCTTAAAAAATCGTCACAACCCTTTCTAATTTTTATTGAATAATAAAATAGTTTGAATCTAAATTTTTGTATTTTTCAATTAAATAGGTGTACTATTTTCTAAGTTAATCACCTTTTGTTAGACTTGAATAGATGCAGACAAAAATACAATTTAGTTTCACTATCTTCCACAAAATTTAAAGCGCATATCTCAAAAACTGCGCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>161 141 125 117 77 72 72 57 46 35 33 28 25 11</canonical_bands>
                <polymorphic_bands>207 141 125 117 77 72 72 57 35 33 28 25 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACAAAGGATGGTAAACATGA</pcr_primer_p1>
		<pcr_primer_p2>TGAATTGATAAATTGGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>541</pcr_amplicon_size>
		<canonical_amplicon>CACAAAGGATGGTAAACATGATTTTTCGGCTGACAAGAAGAATTTTTTTATAGTTATTGAACTATTTTTCAATGAAACAATGAATTAGTTCATCAATTTTTTTTTGTTTTTTAAGTGTAAAATTTTATGCTGAGCAATTCATCCGTTAACAACTTTTTAATAGCTTTCTTGGCTTTTGAGATAAGCGCCTTAAAAGAGACGCAGGCACTAGGGCAGCTGCGTTTTCAAAGGCGCATATCTCAAAAACTACGGTAGATAGAAAAAGATGTAAACTACAAAAATATGTAAAATTTTATGCTGAGCAATTTAATAGCTGACAGTTTTTTGATAGCTTTTTTTGTTCTTGAGATATGAGCGTTTGAAAAAGAAAGCATCCAATTTCTCTCGAAAACTATGTTTTTAGCTTGAAAAGTATAGCTAGCTTTTGCCGCGTGATTTTACTCAAAAAATCCTTTTTTTCAGCCTTGTTAAAAAATATTTTTCTCGTGAATCCCCAATCGCCCGGTTATTCAATTAACAAAAAACCCAATTTATCAATTCA</canonical_amplicon>
		<polymorphic_amplicon>CACAAAGGATGGTAAACATGATTTTTCGGCTGACAAGAAGAATTTTTTTATAGTTATTGAACTATTTTTCAATGAAACAATGAATTAGTTCATCAATTTTTTTTTGTTTTTTAAGTGTAAAATTTTATGCTGAGCAATTCATCCGTTAACAACTTTTTAATAGCTTTCTTGGCTTTTGAGATAAGCGCCTTAAAAGAGACGCAGGCACTAGGGCAGCTGCGTTTTCAAAGGCGCATATCTCAAAAACTACGGTAGATAGAAAAAGATGTAAACTACAAAAATATGTAAAATTTTATGCTGAGCAATTTAATAGCTGACAGTTTTTTGATAGCTTTTTTTGTTCTTGAGATATGAGCGTTTGAAAAAGAAAGCATCCAATTTCTCTCGAAAACTATGTTTTTAGCTTGAAAAGTATAGCTAGCTTTTGCCGCGTGATTTTACTCAAAAAATCCTTTTTTTCAGCCTTGTTWAAAAATATTTTTCTCGTGAATCCCCAATCGCCCGGTTATTCAATTAACAAAAAACCCAATTTATCAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8547</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>119095</contig_pos>
        <strand></strand>
        <context>TTTCAGCCTT[G/T]TTWAAAAATA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCTAGCTTTTGCCGCGTGATTTTACTCAAAAAATCCTTTTTTTCAGCCTT</left_flank>
        <right_flank>TTAAAAAATATTTTTCTCGTGAATCCCCAATCGCCCGGTTATTCAATTAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATATATATATATATGTTTGTATCAAAAAAAGCACAAAGGATGGTAAACATGATTTTTCGGCTGACAAGAAGAATTTTTTTATAGTTATTGAACTATTTTTCAATGAAACAATGAATTAGTTCATCAATTTTTTTTTGTTTTTTAAGTGTAAAATTTTATGCTGAGCAATTCATCCGTTAACAACTTTTTAATAGCTTTCTTGGCTTTTGAGATAAGCGCCTTAAAAGAGACGCAGGCACTAGGGCAGCTGCGTTTTCAAAGGCGCATATCTCAAAAACTACGGTAGATAGAAAAAGATGTAAACTACAAAAATATGTAAAATTTTATGCTGAGCAATTTAATAGCTGACAGTTTTTTGATAGCTTTTTTTGTTCTTGAGATATGAGCGTTTGAAAAAGAAAGCATCCAATTTCTCTCGAAAACTATGTTTTTAGCTTGAAAAGTATAGCTAGCTTTTGCCGCGTGATTTTACTCAAAAAATCCTTTTTTTCAGCCTTGTTAAAAAATATTTTTCTCGTGAATCCCCAATCGCCCGGTTATTCAATTAACAAAAAACCCAATTTATCAATTCAAGCCAATCAAAATAGAAATCAGTTCTAATAAATGTTCATCTAAATGTTCATTCATCTCGATTCTCCACTGGATTCTCCTAACTATGTTTTTTCCTTGTTAAGTATGCTTTCAAATTACAAGTGAGTTTGATTTTGAGAAAAAAAAAGATTTTCATTAAAATTTTTTCTGATTTCAGACAATCGCAACTAATCTTCTTCTAAACATTGGAGTTCTGCTTTTGTGTCCTTAAAAAATCGTCACAACCCTTTCTAATTTTTATTGAATAATAAAATAGTTTGAATCTAAATTTTTGTATTTTTCAATTAAATAGGTGTACTATTTTCTAAGTTAATCACCTTTTGTTAGACTTGAATAGATGCAGACAAAAATACAATTTAGTTTCACTATCTTCCACAAAATTTAAAGCGCATATCTCAAAAACTGCG</canonical>
            <polymorphic>ATATATATATATATATGTTTGTATCAAAAAAAGCACAAAGGATGGTAAACATGATTTTTCGGCTGACAAGAAGAATTTTTTTATAGTTATTGAACTATTTTTCAATGAAACAATGAATTAGTTCATCAATTTTTTTTTGTTTTTTAAGTGTAAAATTTTATGCTGAGCAATTCATCCGTTAACAACTTTTTAATAGCTTTCTTGGCTTTTGAGATAAGCGCCTTAAAAGAGACGCAGGCACTAGGGCAGCTGCGTTTTCAAAGGCGCATATCTCAAAAACTACGGTAGATAGAAAAAGATGTAAACTACAAAAATATGTAAAATTTTATGCTGAGCAATTTAATAGCTGACAGTTTTTTGATAGCTTTTTTTGTTCTTGAGATATGAGCGTTTGAAAAAGAAAGCATCCAATTTCTCTCGAAAACTATGTTTTTAGCTTGAAAAGTATAGCTAGCTTTTGCCGCGTGATTTTACTCAAAAAATCCTTTTTTTCAGCCTTKTTAAAAAATATTTTTCTCGTGAATCCCCAATCGCCCGGTTATTCAATTAACAAAAAACCCAATTTATCAATTCAAGCCAATCAAAATAGAAATCAGTTCTAATAAATGTTCATCTAAATGTTCATTCATCTCGATTCTCCACTGGATTCTCCTAACTATGTTTTTTCCTTGTTAAGTATGCTTTCAAATTACAAGTGAGTTTGATTTTGAGAAAAAAAAAGATTTTCATTAAAATTTTTTCTGATTTCAGACAATCGCAACTAATCTTCTTCTAAACATTGGAGTTCTGCTTTTGTGTCCTTAAAAAATCGTCACAACCCTTTCTAATTTTTATTGAATAATAAAATAGTTTGAATCTAAATTTTTGTATTTTTCAATTAAATAGGTGTACTATTTTCTAAGTTAATCACCTTTTGTTAGACTTGAATAGATGCAGACAAAAATACAATTTAGTTTCACTATCTTCCACAAAATTTAAAGCGCATATCTCAAAAACTGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAAAGGATGGTAAACATGA</pcr_primer_p1>
		<pcr_primer_p2>TGAATTGATAAATTGGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>541</pcr_amplicon_size>
		<canonical_amplicon>CACAAAGGATGGTAAACATGATTTTTCGGCTGACAAGAAGAATTTTTTTATAGTTATTGAACTATTTTTCAATGAAACAATGAATTAGTTCATCAATTTTTTTTTGTTTTTTAAGTGTAAAATTTTATGCTGAGCAATTCATCCGTTAACAACTTTTTAATAGCTTTCTTGGCTTTTGAGATAAGCGCCTTAAAAGAGACGCAGGCACTAGGGCAGCTGCGTTTTCAAAGGCGCATATCTCAAAAACTACGGTAGATAGAAAAAGATGTAAACTACAAAAATATGTAAAATTTTATGCTGAGCAATTTAATAGCTGACAGTTTTTTGATAGCTTTTTTTGTTCTTGAGATATGAGCGTTTGAAAAAGAAAGCATCCAATTTCTCTCGAAAACTATGTTTTTAGCTTGAAAAGTATAGCTAGCTTTTGCCGCGTGATTTTACTCAAAAAATCCTTTTTTTCAGCCTTGTTAAAAAATATTTTTCTCGTGAATCCCCAATCGCCCGGTTATTCAATTAACAAAAAACCCAATTTATCAATTCA</canonical_amplicon>
		<polymorphic_amplicon>CACAAAGGATGGTAAACATGATTTTTCGGCTGACAAGAAGAATTTTTTTATAGTTATTGAACTATTTTTCAATGAAACAATGAATTAGTTCATCAATTTTTTTTTGTTTTTTAAGTGTAAAATTTTATGCTGAGCAATTCATCCGTTAACAACTTTTTAATAGCTTTCTTGGCTTTTGAGATAAGCGCCTTAAAAGAGACGCAGGCACTAGGGCAGCTGCGTTTTCAAAGGCGCATATCTCAAAAACTACGGTAGATAGAAAAAGATGTAAACTACAAAAATATGTAAAATTTTATGCTGAGCAATTTAATAGCTGACAGTTTTTTGATAGCTTTTTTTGTTCTTGAGATATGAGCGTTTGAAAAAGAAAGCATCCAATTTCTCTCGAAAACTATGTTTTTAGCTTGAAAAGTATAGCTAGCTTTTGCCGCGTGATTTTACTCAAAAAATCCTTTTTTTCAGCCTTKTTAAAAAATATTTTTCTCGTGAATCCCCAATCGCCCGGTTATTCAATTAACAAAAAACCCAATTTATCAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8548</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>119063</contig_pos>
        <strand></strand>
        <context>TTGCCGCGTG[A/G]TTTTACTCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGAAAACTATGTTTTTAGCTTGAAAAGTATAGCTAGCTTTTGCCGCGTG</left_flank>
        <right_flank>TTTTACTCAAAAAATCCTTTTTTTCAGCCTTGTTAAAAAATATTTTTCTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGTAATTCAAAAATAGTATTTTCAGACAATATATATATATATATATGTTTGTATCAAAAAAAGCACAAAGGATGGTAAACATGATTTTTCGGCTGACAAGAAGAATTTTTTTATAGTTATTGAACTATTTTTCAATGAAACAATGAATTAGTTCATCAATTTTTTTTTGTTTTTTAAGTGTAAAATTTTATGCTGAGCAATTCATCCGTTAACAACTTTTTAATAGCTTTCTTGGCTTTTGAGATAAGCGCCTTAAAAGAGACGCAGGCACTAGGGCAGCTGCGTTTTCAAAGGCGCATATCTCAAAAACTACGGTAGATAGAAAAAGATGTAAACTACAAAAATATGTAAAATTTTATGCTGAGCAATTTAATAGCTGACAGTTTTTTGATAGCTTTTTTTGTTCTTGAGATATGAGCGTTTGAAAAAGAAAGCATCCAATTTCTCTCGAAAACTATGTTTTTAGCTTGAAAAGTATAGCTAGCTTTTGCCGCGTGATTTTACTCAAAAAATCCTTTTTTTCAGCCTTGTTAAAAAATATTTTTCTCGTGAATCCCCAATCGCCCGGTTATTCAATTAACAAAAAACCCAATTTATCAATTCAAGCCAATCAAAATAGAAATCAGTTCTAATAAATGTTCATCTAAATGTTCATTCATCTCGATTCTCCACTGGATTCTCCTAACTATGTTTTTTCCTTGTTAAGTATGCTTTCAAATTACAAGTGAGTTTGATTTTGAGAAAAAAAAAGATTTTCATTAAAATTTTTTCTGATTTCAGACAATCGCAACTAATCTTCTTCTAAACATTGGAGTTCTGCTTTTGTGTCCTTAAAAAATCGTCACAACCCTTTCTAATTTTTATTGAATAATAAAATAGTTTGAATCTAAATTTTTGTATTTTTCAATTAAATAGGTGTACTATTTTCTAAGTTAATCACCTTTTGTTAGACTTGAATAGATGCAGACAAAAATACAATTTAGTTTCACTATCTTCCA</canonical>
            <polymorphic>ACAGTAATTCAAAAATAGTATTTTCAGACAATATATATATATATATATGTTTGTATCAAAAAAAGCACAAAGGATGGTAAACATGATTTTTCGGCTGACAAGAAGAATTTTTTTATAGTTATTGAACTATTTTTCAATGAAACAATGAATTAGTTCATCAATTTTTTTTTGTTTTTTAAGTGTAAAATTTTATGCTGAGCAATTCATCCGTTAACAACTTTTTAATAGCTTTCTTGGCTTTTGAGATAAGCGCCTTAAAAGAGACGCAGGCACTAGGGCAGCTGCGTTTTCAAAGGCGCATATCTCAAAAACTACGGTAGATAGAAAAAGATGTAAACTACAAAAATATGTAAAATTTTATGCTGAGCAATTTAATAGCTGACAGTTTTTTGATAGCTTTTTTTGTTCTTGAGATATGAGCGTTTGAAAAAGAAAGCATCCAATTTCTCTCGAAAACTATGTTTTTAGCTTGAAAAGTATAGCTAGCTTTTGCCGCGTGRTTTTACTCAAAAAATCCTTTTTTTCAGCCTTGTTAAAAAATATTTTTCTCGTGAATCCCCAATCGCCCGGTTATTCAATTAACAAAAAACCCAATTTATCAATTCAAGCCAATCAAAATAGAAATCAGTTCTAATAAATGTTCATCTAAATGTTCATTCATCTCGATTCTCCACTGGATTCTCCTAACTATGTTTTTTCCTTGTTAAGTATGCTTTCAAATTACAAGTGAGTTTGATTTTGAGAAAAAAAAAGATTTTCATTAAAATTTTTTCTGATTTCAGACAATCGCAACTAATCTTCTTCTAAACATTGGAGTTCTGCTTTTGTGTCCTTAAAAAATCGTCACAACCCTTTCTAATTTTTATTGAATAATAAAATAGTTTGAATCTAAATTTTTGTATTTTTCAATTAAATAGGTGTACTATTTTCTAAGTTAATCACCTTTTGTTAGACTTGAATAGATGCAGACAAAAATACAATTTAGTTTCACTATCTTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAAAGGATGGTAAACATGA</pcr_primer_p1>
		<pcr_primer_p2>TGAATTGATAAATTGGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>541</pcr_amplicon_size>
		<canonical_amplicon>CACAAAGGATGGTAAACATGATTTTTCGGCTGACAAGAAGAATTTTTTTATAGTTATTGAACTATTTTTCAATGAAACAATGAATTAGTTCATCAATTTTTTTTTGTTTTTTAAGTGTAAAATTTTATGCTGAGCAATTCATCCGTTAACAACTTTTTAATAGCTTTCTTGGCTTTTGAGATAAGCGCCTTAAAAGAGACGCAGGCACTAGGGCAGCTGCGTTTTCAAAGGCGCATATCTCAAAAACTACGGTAGATAGAAAAAGATGTAAACTACAAAAATATGTAAAATTTTATGCTGAGCAATTTAATAGCTGACAGTTTTTTGATAGCTTTTTTTGTTCTTGAGATATGAGCGTTTGAAAAAGAAAGCATCCAATTTCTCTCGAAAACTATGTTTTTAGCTTGAAAAGTATAGCTAGCTTTTGCCGCGTGATTTTACTCAAAAAATCCTTTTTTTCAGCCTTGTTAAAAAATATTTTTCTCGTGAATCCCCAATCGCCCGGTTATTCAATTAACAAAAAACCCAATTTATCAATTCA</canonical_amplicon>
		<polymorphic_amplicon>CACAAAGGATGGTAAACATGATTTTTCGGCTGACAAGAAGAATTTTTTTATAGTTATTGAACTATTTTTCAATGAAACAATGAATTAGTTCATCAATTTTTTTTTGTTTTTTAAGTGTAAAATTTTATGCTGAGCAATTCATCCGTTAACAACTTTTTAATAGCTTTCTTGGCTTTTGAGATAAGCGCCTTAAAAGAGACGCAGGCACTAGGGCAGCTGCGTTTTCAAAGGCGCATATCTCAAAAACTACGGTAGATAGAAAAAGATGTAAACTACAAAAATATGTAAAATTTTATGCTGAGCAATTTAATAGCTGACAGTTTTTTGATAGCTTTTTTTGTTCTTGAGATATGAGCGTTTGAAAAAGAAAGCATCCAATTTCTCTCGAAAACTATGTTTTTAGCTTGAAAAGTATAGCTAGCTTTTGCCGCGTGRTTTTACTCAAAAAATCCTTTTTTTCAGCCTTGTTAAAAAATATTTTTCTCGTGAATCCCCAATCGCCCGGTTATTCAATTAACAAAAAACCCAATTTATCAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8549</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>119026</contig_pos>
        <strand></strand>
        <context>AAAACTATGT[T/G]TTTAGCTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GATATGAGCGTTTGAAAAAGAAAGCATCCAATTTCTCTCGAAAACTATGT</left_flank>
        <right_flank>TTTAGCTTGAAAAGTATAGCTAGCTTTTGCCGCGTGATTTTACTCAAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTGCATCATCAATGTAAGCCCTGTAGAAGAATCTACAGTAATTCAAAAATAGTATTTTCAGACAATATATATATATATATATGTTTGTATCAAAAAAAGCACAAAGGATGGTAAACATGATTTTTCGGCTGACAAGAAGAATTTTTTTATAGTTATTGAACTATTTTTCAATGAAACAATGAATTAGTTCATCAATTTTTTTTTGTTTTTTAAGTGTAAAATTTTATGCTGAGCAATTCATCCGTTAACAACTTTTTAATAGCTTTCTTGGCTTTTGAGATAAGCGCCTTAAAAGAGACGCAGGCACTAGGGCAGCTGCGTTTTCAAAGGCGCATATCTCAAAAACTACGGTAGATAGAAAAAGATGTAAACTACAAAAATATGTAAAATTTTATGCTGAGCAATTTAATAGCTGACAGTTTTTTGATAGCTTTTTTTGTTCTTGAGATATGAGCGTTTGAAAAAGAAAGCATCCAATTTCTCTCGAAAACTATGTTTTTAGCTTGAAAAGTATAGCTAGCTTTTGCCGCGTGATTTTACTCAAAAAATCCTTTTTTTCAGCCTTGTTAAAAAATATTTTTCTCGTGAATCCCCAATCGCCCGGTTATTCAATTAACAAAAAACCCAATTTATCAATTCAAGCCAATCAAAATAGAAATCAGTTCTAATAAATGTTCATCTAAATGTTCATTCATCTCGATTCTCCACTGGATTCTCCTAACTATGTTTTTTCCTTGTTAAGTATGCTTTCAAATTACAAGTGAGTTTGATTTTGAGAAAAAAAAAGATTTTCATTAAAATTTTTTCTGATTTCAGACAATCGCAACTAATCTTCTTCTAAACATTGGAGTTCTGCTTTTGTGTCCTTAAAAAATCGTCACAACCCTTTCTAATTTTTATTGAATAATAAAATAGTTTGAATCTAAATTTTTGTATTTTTCAATTAAATAGGTGTACTATTTTCTAAGTTAATCACCTTTTGTTAGACTTGAATAGA</canonical>
            <polymorphic>AAATTGCATCATCAATGTAAGCCCTGTAGAAGAATCTACAGTAATTCAAAAATAGTATTTTCAGACAATATATATATATATATATGTTTGTATCAAAAAAAGCACAAAGGATGGTAAACATGATTTTTCGGCTGACAAGAAGAATTTTTTTATAGTTATTGAACTATTTTTCAATGAAACAATGAATTAGTTCATCAATTTTTTTTTGTTTTTTAAGTGTAAAATTTTATGCTGAGCAATTCATCCGTTAACAACTTTTTAATAGCTTTCTTGGCTTTTGAGATAAGCGCCTTAAAAGAGACGCAGGCACTAGGGCAGCTGCGTTTTCAAAGGCGCATATCTCAAAAACTACGGTAGATAGAAAAAGATGTAAACTACAAAAATATGTAAAATTTTATGCTGAGCAATTTAATAGCTGACAGTTTTTTGATAGCTTTTTTTGTTCTTGAGATATGAGCGTTTGAAAAAGAAAGCATCCAATTTCTCTCGAAAACTATGTKTTTAGCTTGAAAAGTATAGCTAGCTTTTGCCGCGTGATTTTACTCAAAAAATCCTTTTTTTCAGCCTTGTTAAAAAATATTTTTCTCGTGAATCCCCAATCGCCCGGTTATTCAATTAACAAAAAACCCAATTTATCAATTCAAGCCAATCAAAATAGAAATCAGTTCTAATAAATGTTCATCTAAATGTTCATTCATCTCGATTCTCCACTGGATTCTCCTAACTATGTTTTTTCCTTGTTAAGTATGCTTTCAAATTACAAGTGAGTTTGATTTTGAGAAAAAAAAAGATTTTCATTAAAATTTTTTCTGATTTCAGACAATCGCAACTAATCTTCTTCTAAACATTGGAGTTCTGCTTTTGTGTCCTTAAAAAATCGTCACAACCCTTTCTAATTTTTATTGAATAATAAAATAGTTTGAATCTAAATTTTTGTATTTTTCAATTAAATAGGTGTACTATTTTCTAAGTTAATCACCTTTTGTTAGACTTGAATAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAAAGGATGGTAAACATGA</pcr_primer_p1>
		<pcr_primer_p2>TGAATTGATAAATTGGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>541</pcr_amplicon_size>
		<canonical_amplicon>CACAAAGGATGGTAAACATGATTTTTCGGCTGACAAGAAGAATTTTTTTATAGTTATTGAACTATTTTTCAATGAAACAATGAATTAGTTCATCAATTTTTTTTTGTTTTTTAAGTGTAAAATTTTATGCTGAGCAATTCATCCGTTAACAACTTTTTAATAGCTTTCTTGGCTTTTGAGATAAGCGCCTTAAAAGAGACGCAGGCACTAGGGCAGCTGCGTTTTCAAAGGCGCATATCTCAAAAACTACGGTAGATAGAAAAAGATGTAAACTACAAAAATATGTAAAATTTTATGCTGAGCAATTTAATAGCTGACAGTTTTTTGATAGCTTTTTTTGTTCTTGAGATATGAGCGTTTGAAAAAGAAAGCATCCAATTTCTCTCGAAAACTATGTTTTTAGCTTGAAAAGTATAGCTAGCTTTTGCCGCGTGATTTTACTCAAAAAATCCTTTTTTTCAGCCTTGTTAAAAAATATTTTTCTCGTGAATCCCCAATCGCCCGGTTATTCAATTAACAAAAAACCCAATTTATCAATTCA</canonical_amplicon>
		<polymorphic_amplicon>CACAAAGGATGGTAAACATGATTTTTCGGCTGACAAGAAGAATTTTTTTATAGTTATTGAACTATTTTTCAATGAAACAATGAATTAGTTCATCAATTTTTTTTTGTTTTTTAAGTGTAAAATTTTATGCTGAGCAATTCATCCGTTAACAACTTTTTAATAGCTTTCTTGGCTTTTGAGATAAGCGCCTTAAAAGAGACGCAGGCACTAGGGCAGCTGCGTTTTCAAAGGCGCATATCTCAAAAACTACGGTAGATAGAAAAAGATGTAAACTACAAAAATATGTAAAATTTTATGCTGAGCAATTTAATAGCTGACAGTTTTTTGATAGCTTTTTTTGTTCTTGAGATATGAGCGTTTGAAAAAGAAAGCATCCAATTTCTCTCGAAAACTATGTKTTTAGCTTGAAAAGTATAGCTAGCTTTTGCCGCGTGATTTTACTCAAAAAATCCTTTTTTTCAGCCTTGTTAAAAAATATTTTTCTCGTGAATCCCCAATCGCCCGGTTATTCAATTAACAAAAAACCCAATTTATCAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8550</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>122225</contig_pos>
        <strand>+</strand>
        <context>GGCGTCTGGG[A/G]CCCAGTTGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATGCGCCTTTAAAGAGATGCAGACACTATACGGTGTGAGGCGTCTGGG</left_flank>
        <right_flank>CCCAGTTGTCGGCAACAAGCCACAAGCTCGAGGTCTGAGCTCAAGCTCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGTGAAGACTGCGGGGTGGCTAGGCGTCTGGGGATTTTTAAAGATGTATACTTCAAAAAATACGGTAGCTGGAAAAAAGCTAGAGGCTAGAGGCTAGAGGCAAGAGGCTTCTAATGCCCTGAGGCAGGGTGTAATACTTTCCAACAAGTATATCGCAAGAGACAAAAACGATATCAAAAAATTGTCAACTAACGAAATATGTAAAATGCTATGCTGAGTAATTTCATAGTTAACAAATTTTTGATAGCGCATTTGGTTCTCGAGATATAGCAGTTTGTCGACAACAGGATATTTCAGTAGCGCCTCTACTCCGCCCCCAAATTTAAAAAACGGATATCTCGAAAAGTACTGTAGTTTCAAAAAAGTTGTCAACTACAAAAATATGCAAAATTTTATGTTGCATATTTTTGTAGTTTACAAAATTTTGATAGCGCTTTTTGTTCTTGAGACATGCGCCTTTAAAGAGATGCAGACACTATACGGTGTGAGGCGTCTGGGACCCAGTTGTCGGCAACAAGCCACAAGCTCGAGGTCTGAGCTCAAGCTCAAAAGCAAGCTCAATATCAAGCTCAAGATCTTCAGCTCAATCTCTCTCACCTGATACAAGCCCTCCTGAGCCTTCAAAAATCCCAAAAACTTTGTGGCATCTCCGTCCAACTTGATATTCTTCCTCGTTCTCTCCGTTATCACAGCAAACGGACTGATAATTCGATTATCAGAGATTCTGATGACCTTATCAGAAGTCCGAAGACTGGCTTGTTGTTGGACTAGAATCGTCACTTGAACTGGTGCTAATTCTCCATTTTTCGGCATCAAAATCAGTGAAAATGTTTTTTGCGCATCGTCTTGGAGACATTTTTCAGTGTCGAATTGACCGCAAGATAGGATTAAATCATTTCCAACCAAGGAGAATCTGAAAAATTAGAAATGGAATAAAATATAAAAATTAAAATTGTCTGGAATTTCCTTCAGCTTCAAATCAATATAATCAAAAGTGAC</canonical>
            <polymorphic>AGGTGAAGACTGCGGGGTGGCTAGGCGTCTGGGGATTTTTAAAGATGTATACTTCAAAAAATACGGTAGCTGGAAAAAAGCTAGAGGCTAGAGGCTAGAGGCAAGAGGCTTCTAATGCCCTGAGGCAGGGTGTAATACTTTCCAACAAGTATATCGCAAGAGACAAAAACGATATCAAAAAATTGTCAACTAACGAAATATGTAAAATGCTATGCTGAGTAATTTCATAGTTAACAAATTTTTGATAGCGCATTTGGTTCTCGAGATATAGCAGTTTGTCGACAACAGGATATTTCAGTAGCGCCTCTACTCCGCCCCCAAATTTAAAAAACGGATATCTCGAAAAGTACTGTAGTTTCAAAAAAGTTGTCAACTACAAAAATATGCAAAATTTTATGTTGCATATTTTTGTAGTTTACAAAATTTTGATAGCGCTTTTTGTTCTTGAGACATGCGCCTTTAAAGAGATGCAGACACTATACGGTGTGAGGCGTCTGGGRCCCAGTTGTCGGCAACAAGCCACAAGCTCGAGGTCTGAGCTCAAGCTCAAAAGCAAGCTCAATATCAAGCTCAAGATCTTCAGCTCAATCTCTCTCACCTGATACAAGCCCTCCTGAGCCTTCAAAAATCCCAAAAACTTTGTGGCATCTCCGTCCAACTTGATATTCTTCCTCGTTCTCTCCGTTATCACAGCAAACGGACTGATAATTCGATTATCAGAGATTCTGATGACCTTATCAGAAGTCCGAAGACTGGCTTGTTGTTGGACTAGAATCGTCACTTGAACTGGTGCTAATTCTCCATTTTTCGGCATCAAAATCAGTGAAAATGTTTTTTGCGCATCGTCTTGGAGACATTTTTCAGTGTCGAATTGACCGCAAGATAGGATTAAATCATTTCCAACCAAGGAGAATCTGAAAAATTAGAAATGGAATAAAATATAAAAATTAAAATTGTCTGGAATTTCCTTCAGCTTCAAATCAATATAATCAAAAGTGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNNNNGTC</site>
                <isoschizomers>
                    <enzyme>AasI</enzyme>
                    <enzyme>DrdI</enzyme>
                    <enzyme>DseDI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGGWCCC</site>
                <isoschizomers>
                    <enzyme>SanDI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGGTGTAATACTTTCCAACAA</pcr_primer_p1>
		<pcr_primer_p2>GATATTGAGCTTGCTTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>440</pcr_amplicon_size>
		<canonical_amplicon>AGGGTGTAATACTTTCCAACAAGTATATCGCAAGAGACAAAAACGATATCAAAAAATTGTCAACTAACGAAATATGTAAAATGCTATGCTGAGTAATTTCATAGTTAACAAATTTTTGATAGCGCATTTGGTTCTCGAGATATAGCAGTTTGTCGACAACAGGATATTTCAGTAGCGCCTCTACTCCGCCCCCAAATTTAAAAAACGGATATCTCGAAAAGTACTGTAGTTTCAAAAAAGTTGTCAACTACAAAAATATGCAAAATTTTATGTTGCATATTTTTGTAGTTTACAAAATTTTGATAGCGCTTTTTGTTCTTGAGACATGCGCCTTTAAAGAGATGCAGACACTATACGGTGTGAGGCGTCTGGGACCCAGTTGTCGGCAACAAGCCACAAGCTCGAGGTCTGAGCTCAAGCTCAAAAGCAAGCTCAATATC</canonical_amplicon>
		<polymorphic_amplicon>AGGGTGTAATACTTTCCAACAAGTATATCGCAAGAGACAAAAACGATATCAAAAAATTGTCAACTAACGAAATATGTAAAATGCTATGCTGAGTAATTTCATAGTTAACAAATTTTTGATAGCGCATTTGGTTCTCGAGATATAGCAGTTTGTCGACAACAGGATATTTCAGTAGCGCCTCTACTCCGCCCCCAAATTTAAAAAACGGATATCTCGAAAAGTACTGTAGTTTCAAAAAAGTTGTCAACTACAAAAATATGCAAAATTTTATGTTGCATATTTTTGTAGTTTACAAAATTTTGATAGCGCTTTTTGTTCTTGAGACATGCGCCTTTAAAGAGATGCAGACACTATACGGTGTGAGGCGTCTGGGRCCCAGTTGTCGGCAACAAGCCACAAGCTCGAGGTCTGAGCTCAAGCTCAAAAGCAAGCTCAATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8551</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>122368</contig_pos>
        <strand>+</strand>
        <context>AAAAACTTTG[C/T]GGCATCTCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCACCTGATACAAGCCCTCCTGAGCCTTCAAAAATCCCAAAAACTTTG</left_flank>
        <right_flank>GGCATCTCCGTCCAACTTGATATTCTTCCTCGTTCTCTCCGTTATCACAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAAGTATATCGCAAGAGACAAAAACGATATCAAAAAATTGTCAACTAACGAAATATGTAAAATGCTATGCTGAGTAATTTCATAGTTAACAAATTTTTGATAGCGCATTTGGTTCTCGAGATATAGCAGTTTGTCGACAACAGGATATTTCAGTAGCGCCTCTACTCCGCCCCCAAATTTAAAAAACGGATATCTCGAAAAGTACTGTAGTTTCAAAAAAGTTGTCAACTACAAAAATATGCAAAATTTTATGTTGCATATTTTTGTAGTTTACAAAATTTTGATAGCGCTTTTTGTTCTTGAGACATGCGCCTTTAAAGAGATGCAGACACTATACGGTGTGAGGCGTCTGGGACCCAGTTGTCGGCAACAAGCCACAAGCTCGAGGTCTGAGCTCAAGCTCAAAAGCAAGCTCAATATCAAGCTCAAGATCTTCAGCTCAATCTCTCTCACCTGATACAAGCCCTCCTGAGCCTTCAAAAATCCCAAAAACTTTGTGGCATCTCCGTCCAACTTGATATTCTTCCTCGTTCTCTCCGTTATCACAGCAAACGGACTGATAATTCGATTATCAGAGATTCTGATGACCTTATCAGAAGTCCGAAGACTGGCTTGTTGTTGGACTAGAATCGTCACTTGAACTGGTGCTAATTCTCCATTTTTCGGCATCAAAATCAGTGAAAATGTTTTTTGCGCATCGTCTTGGAGACATTTTTCAGTGTCGAATTGACCGCAAGATAGGATTAAATCATTTCCAACCAAGGAGAATCTGAAAAATTAGAAATGGAATAAAATATAAAAATTAAAATTGTCTGGAATTTCCTTCAGCTTCAAATCAATATAATCAAAAGTGACCTAGAAACTCAAAATTAATTTTTTCTAGTCTATCAACTTTGAGCTCAATTATCTCGGTTTCTATGAGAGACATCAGAAAGAATTCTATTGATAAAATTGGTATTACCTTATCAGCAAAGTATTATCAGTTGATCACTTTTTGA</canonical>
            <polymorphic>AACAAGTATATCGCAAGAGACAAAAACGATATCAAAAAATTGTCAACTAACGAAATATGTAAAATGCTATGCTGAGTAATTTCATAGTTAACAAATTTTTGATAGCGCATTTGGTTCTCGAGATATAGCAGTTTGTCGACAACAGGATATTTCAGTAGCGCCTCTACTCCGCCCCCAAATTTAAAAAACGGATATCTCGAAAAGTACTGTAGTTTCAAAAAAGTTGTCAACTACAAAAATATGCAAAATTTTATGTTGCATATTTTTGTAGTTTACAAAATTTTGATAGCGCTTTTTGTTCTTGAGACATGCGCCTTTAAAGAGATGCAGACACTATACGGTGTGAGGCGTCTGGGACCCAGTTGTCGGCAACAAGCCACAAGCTCGAGGTCTGAGCTCAAGCTCAAAAGCAAGCTCAATATCAAGCTCAAGATCTTCAGCTCAATCTCTCTCACCTGATACAAGCCCTCCTGAGCCTTCAAAAATCCCAAAAACTTTGYGGCATCTCCGTCCAACTTGATATTCTTCCTCGTTCTCTCCGTTATCACAGCAAACGGACTGATAATTCGATTATCAGAGATTCTGATGACCTTATCAGAAGTCCGAAGACTGGCTTGTTGTTGGACTAGAATCGTCACTTGAACTGGTGCTAATTCTCCATTTTTCGGCATCAAAATCAGTGAAAATGTTTTTTGCGCATCGTCTTGGAGACATTTTTCAGTGTCGAATTGACCGCAAGATAGGATTAAATCATTTCCAACCAAGGAGAATCTGAAAAATTAGAAATGGAATAAAATATAAAAATTAAAATTGTCTGGAATTTCCTTCAGCTTCAAATCAATATAATCAAAAGTGACCTAGAAACTCAAAATTAATTTTTTCTAGTCTATCAACTTTGAGCTCAATTATCTCGGTTTCTATGAGAGACATCAGAAAGAATTCTATTGATAAAATTGGTATTACCTTATCAGCAAAGTATTATCAGTTGATCACTTTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>333 137 132 90 75 47 46 41 34 33 12 10 8 2</canonical_bands>
                <polymorphic_bands>333 137 132 93 90 75 41 34 33 12 10 8 2</polymorphic_bands>
            </assay>
            <assay>
                <site>CCANNNNNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>XcmI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATCTCTCTCACCTGATACAAG</pcr_primer_p1>
		<pcr_primer_p2>AAAACATTTTCACTGATTTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAATCTCTCTCACCTGATACAAGCCCTCCTGAGCCTTCAAAAATCCCAAAAACTTTGTGGCATCTCCGTCCAACTTGATATTCTTCCTCGTTCTCTCCGTTATCACAGCAAACGGACTGATAATTCGATTATCAGAGATTCTGATGACCTTATCAGAAGTCCGAAGACTGGCTTGTTGTTGGACTAGAATCGTCACTTGAACTGGTGCTAATTCTCCATTTTTCGGCATCAAAATCAGTGAAAATGTTTT</canonical_amplicon>
		<polymorphic_amplicon>CAATCTCTCTCACCTGATACAAGCCCTCCTGAGCCTTCAAAAATCCCAAAAACTTTGYGGCATCTCCGTCCAACTTGATATTCTTCCTCGTTCTCTCCGTTATCACAGCAAACGGACTGATAATTCGATTATCAGAGATTCTGATGACCTTATCAGAAGTCCGAAGACTGGCTTGTTGTTGGACTAGAATCGTCACTTGAACTGGTGCTAATTCTCCATTTTTCGGCATCAAAATCAGTGAAAATGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8552</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>123640</contig_pos>
        <strand>+</strand>
        <context>TCTGACGTCT[C/T]CTATTTCAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGAGTTAGCAAAACGAGCGACAACTTCAAGCTTCTGAATTCTGACGTCT</left_flank>
        <right_flank>CTATTTCAGGAATATTCTGAAGGAAGAGAGCAGTCTCTTCTCCAGATAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTTTTCGTTTATCAACTTTGAGCCCCTATATCTCGCTTTCTGTGAATGGTATCAAGAATGTGAGTACTGATAAAATGGTTATCAAAATATCAGCAACATTTTATCAGTTGACCACTCTTTGATGTCTTTCACTGGAACCGAGATATATAGTCTGAAAGTCGCTGGTTAGGGTGGCCTCCTTCTAGAGAAGTGGGATACGGTAGTCCCTGAATTTCTGCACTATCCACTGTGGCCTACAAACCCATATTTCATGTTTTCTAGTCCACCAACCTTCTATTCCCATTTCCTCCAATAATCTTCAAATCGCCATCCACTTGTCCAATGGTCCGTCCCGACTCCGCGGATTCCATAACTCCAAATTCGACTTCTCTCAACGATAGCATATCAGAGCCCTCCGAAGATTCAGAAGTCGTCTCGAAATTCAATTGGAACGGTGACCGAATCGATGAGTTAGCAAAACGAGCGACAACTTCAAGCTTCTGAATTCTGACGTCTCCTATTTCAGGAATATTCTGAAGGAAGAGAGCAGTCTCTTCTCCAGATAAAATCGAAGCTGGTCGGATTTCTAAAATGCCTTCTGGCTCGATAGAAAGTTGAATTTCCTGTCCCTCGACTCCTTGGAAGTCTACATTGACTCCTCTGATGACGTCGCCAGGTCTCGCGCCACGTGGAATCTGAATAGTGTCTTCTGGAGCGCCACGGAGATTCAGATGGACGTTCTCAATTGGTTGGATTTCTCCATCTGGGGAAGTTCTGAGTGGAAGGATGGTGATAGGACCGGTGATGGGATCCTCTTGTGATTCTGGTAGTTCTCCTGATGATTCCTCGGCTGATCCTTCTCCAGAAGCATCCTGGCTTTCTGAATCCAAAACTTCCACTTCTTCCTTCTCTTCTTCTGCGGTGGGCGTAGAAACTGGCGTTGTAAGATCGTCGTCAGATCCTCCGATGGTGAGAACGTCATCTGGAGATGTGGCAGAAGTCGTGAGCGATTCTTGA</canonical>
            <polymorphic>TTTTTTTTTCGTTTATCAACTTTGAGCCCCTATATCTCGCTTTCTGTGAATGGTATCAAGAATGTGAGTACTGATAAAATGGTTATCAAAATATCAGCAACATTTTATCAGTTGACCACTCTTTGATGTCTTTCACTGGAACCGAGATATATAGTCTGAAAGTCGCTGGTTAGGGTGGCCTCCTTCTAGAGAAGTGGGATACGGTAGTCCCTGAATTTCTGCACTATCCACTGTGGCCTACAAACCCATATTTCATGTTTTCTAGTCCACCAACCTTCTATTCCCATTTCCTCCAATAATCTTCAAATCGCCATCCACTTGTCCAATGGTCCGTCCCGACTCCGCGGATTCCATAACTCCAAATTCGACTTCTCTCAACGATAGCATATCAGAGCCCTCCGAAGATTCAGAAGTCGTCTCGAAATTCAATTGGAACGGTGACCGAATCGATGAGTTAGCAAAACGAGCGACAACTTCAAGCTTCTGAATTCTGACGTCTYCTATTTCAGGAATATTCTGAAGGAAGAGAGCAGTCTCTTCTCCAGATAAAATCGAAGCTGGTCGGATTTCTAAAATGCCTTCTGGCTCGATAGAAAGTTGAATTTCCTGTCCCTCGACTCCTTGGAAGTCTACATTGACTCCTCTGATGACGTCGCCAGGTCTCGCGCCACGTGGAATCTGAATAGTGTCTTCTGGAGCGCCACGGAGATTCAGATGGACGTTCTCAATTGGTTGGATTTCTCCATCTGGGGAAGTTCTGAGTGGAAGGATGGTGATAGGACCGGTGATGGGATCCTCTTGTGATTCTGGTAGTTCTCCTGATGATTCCTCGGCTGATCCTTCTCCAGAAGCATCCTGGCTTTCTGAATCCAAAACTTCCACTTCTTCCTTCTCTTCTTCTGCGGTGGGCGTAGAAACTGGCGTTGTAAGATCGTCGTCAGATCCTCCGATGGTGAGAACGTCATCTGGAGATGTGGCAGAAGTCGTGAGCGATTCTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>506 282 212</canonical_bands>
                <polymorphic_bands>788 212</polymorphic_bands>
            </assay>
            <assay>
                <site>CCTNNNNNAGG</site>
                <isoschizomers>
                    <enzyme>BstENI</enzyme>
                    <enzyme>EcoNI</enzyme>
                    <enzyme>XagI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAGAAGTCGTCTCGAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTCATCAGAGGAGTCAATGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTCAGAAGTCGTCTCGAAATTCAATTGGAACGGTGACCGAATCGATGAGTTAGCAAAACGAGCGACAACTTCAAGCTTCTGAATTCTGACGTCTCCTATTTCAGGAATATTCTGAAGGAAGAGAGCAGTCTCTTCTCCAGATAAAATCGAAGCTGGTCGGATTTCTAAAATGCCTTCTGGCTCGATAGAAAGTTGAATTTCCTGTCCCTCGACTCCTTGGAAGTCTACATTGACTCCTCTGATGAC</canonical_amplicon>
		<polymorphic_amplicon>TTCAGAAGTCGTCTCGAAATTCAATTGGAACGGTGACCGAATCGATGAGTTAGCAAAACGAGCGACAACTTCAAGCTTCTGAATTCTGACGTCTYCTATTTCAGGAATATTCTGAAGGAAGAGAGCAGTCTCTTCTCCAGATAAAATCGAAGCTGGTCGGATTTCTAAAATGCCTTCTGGCTCGATAGAAAGTTGAATTTCCTGTCCCTCGACTCCTTGGAAGTCTACATTGACTCCTCTGATGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8553</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>123509</contig_pos>
        <strand>+</strand>
        <context>CCAAATTCGA[C/T]TTCTCTCAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGTCCAATGGTCCGTCCCGACTCCGCGGATTCCATAACTCCAAATTCGA</left_flank>
        <right_flank>TTCTCTCAACGATAGCATATCAGAGCCCTCCGAAGATTCAGAAGTCGTCT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTAATAAAACATTTATCAAAATATCAGCAACATTTTATCAGTTGACCACATTTTGATGTCTTTCACAGGAACCGAGATATATAGCCTCAAAGTTGAGAGTTTTAAATTCTACATGGAAACTCAAAATTCTTTTTTTTTCGTTTATCAACTTTGAGCCCCTATATCTCGCTTTCTGTGAATGGTATCAAGAATGTGAGTACTGATAAAATGGTTATCAAAATATCAGCAACATTTTATCAGTTGACCACTCTTTGATGTCTTTCACTGGAACCGAGATATATAGTCTGAAAGTCGCTGGTTAGGGTGGCCTCCTTCTAGAGAAGTGGGATACGGTAGTCCCTGAATTTCTGCACTATCCACTGTGGCCTACAAACCCATATTTCATGTTTTCTAGTCCACCAACCTTCTATTCCCATTTCCTCCAATAATCTTCAAATCGCCATCCACTTGTCCAATGGTCCGTCCCGACTCCGCGGATTCCATAACTCCAAATTCGACTTCTCTCAACGATAGCATATCAGAGCCCTCCGAAGATTCAGAAGTCGTCTCGAAATTCAATTGGAACGGTGACCGAATCGATGAGTTAGCAAAACGAGCGACAACTTCAAGCTTCTGAATTCTGACGTCTCCTATTTCAGGAATATTCTGAAGGAAGAGAGCAGTCTCTTCTCCAGATAAAATCGAAGCTGGTCGGATTTCTAAAATGCCTTCTGGCTCGATAGAAAGTTGAATTTCCTGTCCCTCGACTCCTTGGAAGTCTACATTGACTCCTCTGATGACGTCGCCAGGTCTCGCGCCACGTGGAATCTGAATAGTGTCTTCTGGAGCGCCACGGAGATTCAGATGGACGTTCTCAATTGGTTGGATTTCTCCATCTGGGGAAGTTCTGAGTGGAAGGATGGTGATAGGACCGGTGATGGGATCCTCTTGTGATTCTGGTAGTTCTCCTGATGATTCCTCGGCTGATCCTTCTCCAGAAGCATCCTGGCTTTCTGAAT</canonical>
            <polymorphic>AACTAATAAAACATTTATCAAAATATCAGCAACATTTTATCAGTTGACCACATTTTGATGTCTTTCACAGGAACCGAGATATATAGCCTCAAAGTTGAGAGTTTTAAATTCTACATGGAAACTCAAAATTCTTTTTTTTTCGTTTATCAACTTTGAGCCCCTATATCTCGCTTTCTGTGAATGGTATCAAGAATGTGAGTACTGATAAAATGGTTATCAAAATATCAGCAACATTTTATCAGTTGACCACTCTTTGATGTCTTTCACTGGAACCGAGATATATAGTCTGAAAGTCGCTGGTTAGGGTGGCCTCCTTCTAGAGAAGTGGGATACGGTAGTCCCTGAATTTCTGCACTATCCACTGTGGCCTACAAACCCATATTTCATGTTTTCTAGTCCACCAACCTTCTATTCCCATTTCCTCCAATAATCTTCAAATCGCCATCCACTTGTCCAATGGTCCGTCCCGACTCCGCGGATTCCATAACTCCAAATTCGAYTTCTCTCAACGATAGCATATCAGAGCCCTCCGAAGATTCAGAAGTCGTCTCGAAATTCAATTGGAACGGTGACCGAATCGATGAGTTAGCAAAACGAGCGACAACTTCAAGCTTCTGAATTCTGACGTCTCCTATTTCAGGAATATTCTGAAGGAAGAGAGCAGTCTCTTCTCCAGATAAAATCGAAGCTGGTCGGATTTCTAAAATGCCTTCTGGCTCGATAGAAAGTTGAATTTCCTGTCCCTCGACTCCTTGGAAGTCTACATTGACTCCTCTGATGACGTCGCCAGGTCTCGCGCCACGTGGAATCTGAATAGTGTCTTCTGGAGCGCCACGGAGATTCAGATGGACGTTCTCAATTGGTTGGATTTCTCCATCTGGGGAAGTTCTGAGTGGAAGGATGGTGATAGGACCGGTGATGGGATCCTCTTGTGATTCTGGTAGTTCTCCTGATGATTCCTCGGCTGATCCTTCTCCAGAAGCATCCTGGCTTTCTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCCTCCAATAATCTTCAAAT</pcr_primer_p1>
		<pcr_primer_p2>ACTGCTCTCTTCCTTCAGAATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTCCTCCAATAATCTTCAAATCGCCATCCACTTGTCCAATGGTCCGTCCCGACTCCGCGGATTCCATAACTCCAAATTCGACTTCTCTCAACGATAGCATATCAGAGCCCTCCGAAGATTCAGAAGTCGTCTCGAAATTCAATTGGAACGGTGACCGAATCGATGAGTTAGCAAAACGAGCGACAACTTCAAGCTTCTGAATTCTGACGTCTCCTATTTCAGGAATATTCTGAAGGAAGAGAGCAGT</canonical_amplicon>
		<polymorphic_amplicon>ATTTCCTCCAATAATCTTCAAATCGCCATCCACTTGTCCAATGGTCCGTCCCGACTCCGCGGATTCCATAACTCCAAATTCGAYTTCTCTCAACGATAGCATATCAGAGCCCTCCGAAGATTCAGAAGTCGTCTCGAAATTCAATTGGAACGGTGACCGAATCGATGAGTTAGCAAAACGAGCGACAACTTCAAGCTTCTGAATTCTGACGTCTCCTATTTCAGGAATATTCTGAAGGAAGAGAGCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8554</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>123338</contig_pos>
        <strand>+</strand>
        <context>aGAGAAGTGG[A/G]ATACGGTAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATATAGTCTGAAAGTCGCTGGTTAGGGTGGCCTCCTTCTAGAGAAGTGG</left_flank>
        <right_flank>ATACGGTAGTCCCTGAATTTCTGCACTATCCACTGTGGCCTACAAACCCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAAAGTATTATCAGTTGATCACTTTTTGATATCTTTCCCAGGAAAAGAGATATGCAAGATCAAAGTTGAGAGCCCTAAATTCTACATGGAAACTCAAAGTTCTTTTTTTTTTGTTCATCAACTTTGAGCCCATATATCTCGATTCCTGTAGAAAATATCAAAAGATTGTCAACTAATAAAACATTTATCAAAATATCAGCAACATTTTATCAGTTGACCACATTTTGATGTCTTTCACAGGAACCGAGATATATAGCCTCAAAGTTGAGAGTTTTAAATTCTACATGGAAACTCAAAATTCTTTTTTTTTCGTTTATCAACTTTGAGCCCCTATATCTCGCTTTCTGTGAATGGTATCAAGAATGTGAGTACTGATAAAATGGTTATCAAAATATCAGCAACATTTTATCAGTTGACCACTCTTTGATGTCTTTCACTGGAACCGAGATATATAGTCTGAAAGTCGCTGGTTAGGGTGGCCTCCTTCTAGAGAAGTGGGATACGGTAGTCCCTGAATTTCTGCACTATCCACTGTGGCCTACAAACCCATATTTCATGTTTTCTAGTCCACCAACCTTCTATTCCCATTTCCTCCAATAATCTTCAAATCGCCATCCACTTGTCCAATGGTCCGTCCCGACTCCGCGGATTCCATAACTCCAAATTCGACTTCTCTCAACGATAGCATATCAGAGCCCTCCGAAGATTCAGAAGTCGTCTCGAAATTCAATTGGAACGGTGACCGAATCGATGAGTTAGCAAAACGAGCGACAACTTCAAGCTTCTGAATTCTGACGTCTCCTATTTCAGGAATATTCTGAAGGAAGAGAGCAGTCTCTTCTCCAGATAAAATCGAAGCTGGTCGGATTTCTAAAATGCCTTCTGGCTCGATAGAAAGTTGAATTTCCTGTCCCTCGACTCCTTGGAAGTCTACATTGACTCCTCTGATGACGTCGCCAGGTCTCGCGCCACGTGGAATCTGAATAGTGTCTTCTGGAG</canonical>
            <polymorphic>GCAAAGTATTATCAGTTGATCACTTTTTGATATCTTTCCCAGGAAAAGAGATATGCAAGATCAAAGTTGAGAGCCCTAAATTCTACATGGAAACTCAAAGTTCTTTTTTTTTTGTTCATCAACTTTGAGCCCATATATCTCGATTCCTGTAGAAAATATCAAAAGATTGTCAACTAATAAAACATTTATCAAAATATCAGCAACATTTTATCAGTTGACCACATTTTGATGTCTTTCACAGGAACCGAGATATATAGCCTCAAAGTTGAGAGTTTTAAATTCTACATGGAAACTCAAAATTCTTTTTTTTTCGTTTATCAACTTTGAGCCCCTATATCTCGCTTTCTGTGAATGGTATCAAGAATGTGAGTACTGATAAAATGGTTATCAAAATATCAGCAACATTTTATCAGTTGACCACTCTTTGATGTCTTTCACTGGAACCGAGATATATAGTCTGAAAGTCGCTGGTTAGGGTGGCCTCCTTCTAGAGAAGTGGRATACGGTAGTCCCTGAATTTCTGCACTATCCACTGTGGCCTACAAACCCATATTTCATGTTTTCTAGTCCACCAACCTTCTATTCCCATTTCCTCCAATAATCTTCAAATCGCCATCCACTTGTCCAATGGTCCGTCCCGACTCCGCGGATTCCATAACTCCAAATTCGACTTCTCTCAACGATAGCATATCAGAGCCCTCCGAAGATTCAGAAGTCGTCTCGAAATTCAATTGGAACGGTGACCGAATCGATGAGTTAGCAAAACGAGCGACAACTTCAAGCTTCTGAATTCTGACGTCTCCTATTTCAGGAATATTCTGAAGGAAGAGAGCAGTCTCTTCTCCAGATAAAATCGAAGCTGGTCGGATTTCTAAAATGCCTTCTGGCTCGATAGAAAGTTGAATTTCCTGTCCCTCGACTCCTTGGAAGTCTACATTGACTCCTCTGATGACGTCGCCAGGTCTCGCGCCACGTGGAATCTGAATAGTGTCTTCTGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCTACATGGAAACTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAACATGAAATATGGGTTTGTAG</pcr_primer_p2>
		<pcr_amplicon_size>286</pcr_amplicon_size>
		<canonical_amplicon>AAATTCTACATGGAAACTCAAAATTCTTTTTTTTTCGTTTATCAACTTTGAGCCCCTATATCTCGCTTTCTGTGAATGGTATCAAGAATGTGAGTACTGATAAAATGGTTATCAAAATATCAGCAACATTTTATCAGTTGACCACTCTTTGATGTCTTTCACTGGAACCGAGATATATAGTCTGAAAGTCGCTGGTTAGGGTGGCCTCCTTCTAGAGAAGTGGGATACGGTAGTCCCTGAATTTCTGCACTATCCACTGTGGCCTACAAACCCATATTTCATGTTT</canonical_amplicon>
		<polymorphic_amplicon>AAATTCTACATGGAAACTCAAAATTCTTTTTTTTTCGTTTATCAACTTTGAGCCCCTATATCTCGCTTTCTGTGAATGGTATCAAGAATGTGAGTACTGATAAAATGGTTATCAAAATATCAGCAACATTTTATCAGTTGACCACTCTTTGATGTCTTTCACTGGAACCGAGATATATAGTCTGAAAGTCGCTGGTTAGGGTGGCCTCCTTCTAGAGAAGTGGRATACGGTAGTCCCTGAATTTCTGCACTATCCACTGTGGCCTACAAACCCATATTTCATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8555</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>124942</contig_pos>
        <strand></strand>
        <context>TCACCTCATT[A/C]TTCCCCTCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGGGTTACGGTAGTTTTTGTAGTTCAACACAGTCAAGAGCTCACCTCATT</left_flank>
        <right_flank>TTCCCCTCTGGCAACATGAAATCATAGGACGGCTGATCGAACTTGTCTGG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTTGCTGCGCTTCGACTACAAATTTATAGAGACCTCCTTCGGTTTTCGAAATTTCCACGTTGGCATTTGGTCGGAGGATTACTGTAGCCTTGTAAACATCTGCATTGTCGGCGCGAGTCTTTTCAATGTTTCCAATATCGAACCATTCATTTTCGTCAAAATTCACAATGAAGGTTGGCTTTACATTGTGCTTTCGGGTGATGAAATCGACGACTGCGAGGATTGTGGAGTTCTGAAAAGTTGAGAATTGAGTTTCTCGCGTTAAGAGCTTCAAAAGGAGGATAAACATGCCTAGGCTCCGCCTCTTCTGATATTTCACTTTAAAGGCGCATAGGGGTCCGAATTTTTCAAAGTGGGCGGATCTTAATCATGATTATACTCATTTTGAAGCGCGTATGATGAGAAATCGATATGTTAAACTTTCGTTAAGTTTGAAGCAAAACTGGCTGGGTTACGGTAGTTTTTGTAGTTCAACACAGTCAAGAGCTCACCTCATTATTCCCCTCTGGCAACATGAAATCATAGGACGGCTGATCGAACTTGTCTGGAATTGACGTGGCGTCTCCAACAACTTCTGAGGACGAATCCGACGATTTTGATGGCGTTTCGTCACGACGGACCACGAACTGAAATTAGAAAATTTATATAATTCAAGTATTGAGCTCAATTATTTTGGTTATTTAGAAAAATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATAATATCAACAATATTTCATAAATTCACAAATATTTGATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGAGAGGTATCGAAAGGTGGTAAACCGCTATTGCTTCCATAGAACGTTCACTTTGAGCTCAATCATCTCGGCTATTTTAAGAGATATCAAAAATCTGTTAACTAATAAAATGTTTATCATAACATGATCCATATTTTATCAGTTAGCAATTTTTTCATATCTCAGACAGTAACCGAGATAATTGAGCTCAAAGTTGGTGGTT</canonical>
            <polymorphic>TCCTTGCTGCGCTTCGACTACAAATTTATAGAGACCTCCTTCGGTTTTCGAAATTTCCACGTTGGCATTTGGTCGGAGGATTACTGTAGCCTTGTAAACATCTGCATTGTCGGCGCGAGTCTTTTCAATGTTTCCAATATCGAACCATTCATTTTCGTCAAAATTCACAATGAAGGTTGGCTTTACATTGTGCTTTCGGGTGATGAAATCGACGACTGCGAGGATTGTGGAGTTCTGAAAAGTTGAGAATTGAGTTTCTCGCGTTAAGAGCTTCAAAAGGAGGATAAACATGCCTAGGCTCCGCCTCTTCTGATATTTCACTTTAAAGGCGCATAGGGGTCCGAATTTTTCAAAGTGGGCGGATCTTAATCATGATTATACTCATTTTGAAGCGCGTATGATGAGAAATCGATATGTTAAACTTTCGTTAAGTTTGAAGCAAAACTGGCTGGGTTACGGTAGTTTTTGTAGTTCAACACAGTCAAGAGCTCACCTCATTMTTCCCCTCTGGCAACATGAAATCATAGGACGGCTGATCGAACTTGTCTGGAATTGACGTGGCGTCTCCAACAACTTCTGAGGACGAATCCGACGATTTTGATGGCGTTTCGTCACGACGGACCACGAACTGAAATTAGAAAATTTATATAATTCAAGTATTGAGCTCAATTATTTTGGTTATTTAGAAAAATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATAATATCAACAATATTTCATAAATTCACAAATATTTGATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGAGAGGTATCGAAAGGTGGTAAACCGCTATTGCTTCCATAGAACGTTCACTTTGAGCTCAATCATCTCGGCTATTTTAAGAGATATCAAAAATCTGTTAACTAATAAAATGTTTATCATAACATGATCCATATTTTATCAGTTAGCAATTTTTTCATATCTCAGACAGTAACCGAGATAATTGAGCTCAAAGTTGGTGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGTTGGCTTTACATTGTG</pcr_primer_p1>
		<pcr_primer_p2>ATTCCAGACAAGTTCGATCA</pcr_primer_p2>
		<pcr_amplicon_size>381</pcr_amplicon_size>
		<canonical_amplicon>AAGGTTGGCTTTACATTGTGCTTTCGGGTGATGAAATCGACGACTGCGAGGATTGTGGAGTTCTGAAAAGTTGAGAATTGAGTTTCTCGCGTTAAGAGCTTCAAAAGGAGGATAAACATGCCTAGGCTCCGCCTCTTCTGATATTTCACTTTAAAGGCGCATAGGGGTCCGAATTTTTCAAAGTGGGCGGATCTTAATCATGATTATACTCATTTTGAAGCGCGTATGATGAGAAATCGATATGTTAAACTTTCGTTAAGTTTGAAGCAAAACTGGCTGGGTTACGGTAGTTTTTGTAGTTCAACACAGTCAAGAGCTCACCTCATTATTCCCCTCTGGCAACATGAAATCATAGGACGGCTGATCGAACTTGTCTGGAAT</canonical_amplicon>
		<polymorphic_amplicon>AAGGTTGGCTTTACATTGTGCTTTCGGGTGATGAAATCGACGACTGCGAGGATTGTGGAGTTCTGAAAAGTTGAGAATTGAGTTTCTCGCGTTAAGAGCTTCAAAAGGAGGATAAACATGCCTAGGCTCCGCCTCTTCTGATATTTCACTTTAAAGGCGCATAGGGGTCCGAATTTTTCAAAGTGGGCGGATCTTAATCATGATTATACTCATTTTGAAGCGCGTATGATGAGAAATCGATATGTTAAACTTTCGTTAAGTTTGAAGCAAAACTGGCTGGGTTACGGTAGTTTTTGTAGTTCAACACAGTCAAGAGCTCACCTCATTMTTCCCCTCTGGCAACATGAAATCATAGGACGGCTGATCGAACTTGTCTGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8556</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>128116</contig_pos>
        <strand>+</strand>
        <context>ATRCAGYAAA[C/T]ATGCTCTACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGTCGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATACAGCAAA</left_flank>
        <right_flank>ATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCTAGTTTTAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCTCTACTGGCAAGTTGAGAACCCGCTCTGCCGAACTGTTCATAGTGCTCTATAGAACCAATACTGATGAAAATACAGCAAACACGCTCTATCGATCATCTCGAAATGGAAGTTCAAATAATGGTAGAAAAGAAATGCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATACGCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATAAAATACAGCAAATACGCTCTACCGAACTTTCTAAGGGAAAGGCGCTCTATAGCGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATCAAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAATACGCTCTGCCGAACGTTCTAAGCGAAAATTCGCTCTATAGAAAAAATACAGCGAACACCCTCTGTCGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATACAGCAAACATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCTAGTTTTAATAAAATACAGCGAACACGCTCTGTCGAACTTTTTAAACGAAAATGCGTTCTGTAGAGAAAATACAGCAAACATGCTCTACCGAACTTTTTGAATGGAAATGCGCTCTATAGAGAAAATGCAGCAAATACGCTCTATCGAACTTTCCGAGTGAAAATGCGCTCCACCGAACTTTTTTTCTAGAATGGAAGTCCAAAAAACGCAATCTCTACCTCAACAACAAAACCCAATTATCCCAGAACGTGGCCACGATAAAGTGGATGGTCTGCTAGATGAAGATTGGGAAACCGATGAGGAGAGGGAAAAGAAAAAACAGAGGAAATTGAAAAAATTGGAAGATGCCAAATTTCATATGGTAGACGAGTTGGAAAAATTGGAAAAATCCCGAATGAAAACTGCCGAGGAGGCTGAAAAAACGGCGAAGGAGGAGGAGGAGGCAGATGATGTGAATT</canonical>
            <polymorphic>TGCTCTACTGGCAAGTTGAGAACCCGCTCTGCCGAACTGTTCATAGTGCTCTATAGAACCAATACTGATGAAAATACAGCAAACACGCTCTATCGATCATCTCGAAATGGAAGTTCAAATAATGGTAGAAAAGAAATGCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATACGCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATAAAATACAGCAAATACGCTCTACCGAACTTTCTAAGGGAAAGGCGCTCTATAGCGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATCAAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAATACGCTCTGCCGAACGTTCTAAGCGAAAATTCGCTCTATAGAAAAAATACAGCGAACACCCTCTGTCGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATACAGCAAAYATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCTAGTTTTAATAAAATACAGCGAACACGCTCTGTCGAACTTTTTAAACGAAAATGCGTTCTGTAGAGAAAATACAGCAAACATGCTCTACCGAACTTTTTGAATGGAAATGCGCTCTATAGAGAAAATGCAGCAAATACGCTCTATCGAACTTTCCGAGTGAAAATGCGCTCCACCGAACTTTTTTTCTAGAATGGAAGTCCAAAAAACGCAATCTCTACCTCAACAACAAAACCCAATTATCCCAGAACGTGGCCACGATAAAGTGGATGGTCTGCTAGATGAAGATTGGGAAACCGATGAGGAGAGGGAAAAGAAAAAACAGAGGAAATTGAAAAAATTGGAAGATGCCAAATTTCATATGGTAGACGAGTTGGAAAAATTGGAAAAATCCCGAATGAAAACTGCCGAGGAGGCTGAAAAAACGGCGAAGGAGGAGGAGGAGGCAGATGATGTGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>503 376 121</canonical_bands>
                <polymorphic_bands>624 376</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 379 121</canonical_bands>
                <polymorphic_bands>621 379</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCGAGCTATTCTGATTAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCGTTTAAAAAGTTCGACAGA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAATACGCTCTGCCGAACGTTCTAAGCGAAAATTCGCTCTATAGAAAAAATACAGCGAACACCCTCTGTCGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATACAGCAAACATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCTAGTTTTAATAAAATACAGCGAACACGCTCTGTCGAACTTTTTAAACGA</canonical_amplicon>
		<polymorphic_amplicon>ACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAATACGCTCTGCCGAACGTTCTAAGCGAAAATTCGCTCTATAGAAAAAATACAGCGAACACCCTCTGTCGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATACAGCAAAYATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCTAGTTTTAATAAAATACAGCGAACACGCTCTGTCGAACTTTTTAAACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8557</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>128112</contig_pos>
        <strand>+</strand>
        <context>GAAAATRCAG[C/T]AAAYATGCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCTCTGTCGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATACAG</left_flank>
        <right_flank>AAACATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCTAGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACATGCTCTACTGGCAAGTTGAGAACCCGCTCTGCCGAACTGTTCATAGTGCTCTATAGAACCAATACTGATGAAAATACAGCAAACACGCTCTATCGATCATCTCGAAATGGAAGTTCAAATAATGGTAGAAAAGAAATGCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATACGCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATAAAATACAGCAAATACGCTCTACCGAACTTTCTAAGGGAAAGGCGCTCTATAGCGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATCAAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAATACGCTCTGCCGAACGTTCTAAGCGAAAATTCGCTCTATAGAAAAAATACAGCGAACACCCTCTGTCGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATACAGCAAACATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCTAGTTTTAATAAAATACAGCGAACACGCTCTGTCGAACTTTTTAAACGAAAATGCGTTCTGTAGAGAAAATACAGCAAACATGCTCTACCGAACTTTTTGAATGGAAATGCGCTCTATAGAGAAAATGCAGCAAATACGCTCTATCGAACTTTCCGAGTGAAAATGCGCTCCACCGAACTTTTTTTCTAGAATGGAAGTCCAAAAAACGCAATCTCTACCTCAACAACAAAACCCAATTATCCCAGAACGTGGCCACGATAAAGTGGATGGTCTGCTAGATGAAGATTGGGAAACCGATGAGGAGAGGGAAAAGAAAAAACAGAGGAAATTGAAAAAATTGGAAGATGCCAAATTTCATATGGTAGACGAGTTGGAAAAATTGGAAAAATCCCGAATGAAAACTGCCGAGGAGGCTGAAAAAACGGCGAAGGAGGAGGAGGAGGCAGATGATGTG</canonical>
            <polymorphic>AACATGCTCTACTGGCAAGTTGAGAACCCGCTCTGCCGAACTGTTCATAGTGCTCTATAGAACCAATACTGATGAAAATACAGCAAACACGCTCTATCGATCATCTCGAAATGGAAGTTCAAATAATGGTAGAAAAGAAATGCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATACGCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATAAAATACAGCAAATACGCTCTACCGAACTTTCTAAGGGAAAGGCGCTCTATAGCGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATCAAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAATACGCTCTGCCGAACGTTCTAAGCGAAAATTCGCTCTATAGAAAAAATACAGCGAACACCCTCTGTCGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATACAGYAAACATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCTAGTTTTAATAAAATACAGCGAACACGCTCTGTCGAACTTTTTAAACGAAAATGCGTTCTGTAGAGAAAATACAGCAAACATGCTCTACCGAACTTTTTGAATGGAAATGCGCTCTATAGAGAAAATGCAGCAAATACGCTCTATCGAACTTTCCGAGTGAAAATGCGCTCCACCGAACTTTTTTTCTAGAATGGAAGTCCAAAAAACGCAATCTCTACCTCAACAACAAAACCCAATTATCCCAGAACGTGGCCACGATAAAGTGGATGGTCTGCTAGATGAAGATTGGGAAACCGATGAGGAGAGGGAAAAGAAAAAACAGAGGAAATTGAAAAAATTGGAAGATGCCAAATTTCATATGGTAGACGAGTTGGAAAAATTGGAAAAATCCCGAATGAAAACTGCCGAGGAGGCTGAAAAAACGGCGAAGGAGGAGGAGGAGGCAGATGATGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCGAGCTATTCTGATTAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCGTTTAAAAAGTTCGACAGA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAATACGCTCTGCCGAACGTTCTAAGCGAAAATTCGCTCTATAGAAAAAATACAGCGAACACCCTCTGTCGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATACAGCAAACATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCTAGTTTTAATAAAATACAGCGAACACGCTCTGTCGAACTTTTTAAACGA</canonical_amplicon>
		<polymorphic_amplicon>ACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAATACGCTCTGCCGAACGTTCTAAGCGAAAATTCGCTCTATAGAAAAAATACAGCGAACACCCTCTGTCGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATACAGYAAACATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCTAGTTTTAATAAAATACAGCGAACACGCTCTGTCGAACTTTTTAAACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8558</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>128108</contig_pos>
        <strand>+</strand>
        <context>TAGAGAAAAT[A/G]CAGYAAAYAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACACCCTCTGTCGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAAT</left_flank>
        <right_flank>CAGCAAACATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAAACATGCTCTACTGGCAAGTTGAGAACCCGCTCTGCCGAACTGTTCATAGTGCTCTATAGAACCAATACTGATGAAAATACAGCAAACACGCTCTATCGATCATCTCGAAATGGAAGTTCAAATAATGGTAGAAAAGAAATGCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATACGCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATAAAATACAGCAAATACGCTCTACCGAACTTTCTAAGGGAAAGGCGCTCTATAGCGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATCAAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAATACGCTCTGCCGAACGTTCTAAGCGAAAATTCGCTCTATAGAAAAAATACAGCGAACACCCTCTGTCGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATACAGCAAACATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCTAGTTTTAATAAAATACAGCGAACACGCTCTGTCGAACTTTTTAAACGAAAATGCGTTCTGTAGAGAAAATACAGCAAACATGCTCTACCGAACTTTTTGAATGGAAATGCGCTCTATAGAGAAAATGCAGCAAATACGCTCTATCGAACTTTCCGAGTGAAAATGCGCTCCACCGAACTTTTTTTCTAGAATGGAAGTCCAAAAAACGCAATCTCTACCTCAACAACAAAACCCAATTATCCCAGAACGTGGCCACGATAAAGTGGATGGTCTGCTAGATGAAGATTGGGAAACCGATGAGGAGAGGGAAAAGAAAAAACAGAGGAAATTGAAAAAATTGGAAGATGCCAAATTTCATATGGTAGACGAGTTGGAAAAATTGGAAAAATCCCGAATGAAAACTGCCGAGGAGGCTGAAAAAACGGCGAAGGAGGAGGAGGAGGCAGATGA</canonical>
            <polymorphic>TTCAAACATGCTCTACTGGCAAGTTGAGAACCCGCTCTGCCGAACTGTTCATAGTGCTCTATAGAACCAATACTGATGAAAATACAGCAAACACGCTCTATCGATCATCTCGAAATGGAAGTTCAAATAATGGTAGAAAAGAAATGCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATACGCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATAAAATACAGCAAATACGCTCTACCGAACTTTCTAAGGGAAAGGCGCTCTATAGCGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATCAAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAATACGCTCTGCCGAACGTTCTAAGCGAAAATTCGCTCTATAGAAAAAATACAGCGAACACCCTCTGTCGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATRCAGCAAACATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCTAGTTTTAATAAAATACAGCGAACACGCTCTGTCGAACTTTTTAAACGAAAATGCGTTCTGTAGAGAAAATACAGCAAACATGCTCTACCGAACTTTTTGAATGGAAATGCGCTCTATAGAGAAAATGCAGCAAATACGCTCTATCGAACTTTCCGAGTGAAAATGCGCTCCACCGAACTTTTTTTCTAGAATGGAAGTCCAAAAAACGCAATCTCTACCTCAACAACAAAACCCAATTATCCCAGAACGTGGCCACGATAAAGTGGATGGTCTGCTAGATGAAGATTGGGAAACCGATGAGGAGAGGGAAAAGAAAAAACAGAGGAAATTGAAAAAATTGGAAGATGCCAAATTTCATATGGTAGACGAGTTGGAAAAATTGGAAAAATCCCGAATGAAAACTGCCGAGGAGGCTGAAAAAACGGCGAAGGAGGAGGAGGAGGCAGATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCGAGCTATTCTGATTAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCGTTTAAAAAGTTCGACAGA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAATACGCTCTGCCGAACGTTCTAAGCGAAAATTCGCTCTATAGAAAAAATACAGCGAACACCCTCTGTCGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATACAGCAAACATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCTAGTTTTAATAAAATACAGCGAACACGCTCTGTCGAACTTTTTAAACGA</canonical_amplicon>
		<polymorphic_amplicon>ACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAATACGCTCTGCCGAACGTTCTAAGCGAAAATTCGCTCTATAGAAAAAATACAGCGAACACCCTCTGTCGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATRCAGCAAACATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCTAGTTTTAATAAAATACAGCGAACACGCTCTGTCGAACTTTTTAAACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8559</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>128070</contig_pos>
        <strand>+</strand>
        <context>CACCCTCTGT[C/T]GAACTTTCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTAAGCGAAAATTCGCTCTATAGAAAAAATACAGCGAACACCCTCTGT</left_flank>
        <right_flank>GAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATACAGCAAACATGC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGTGAGAAAGTGCGCTCTATTGAGAATCTAGTGGAAATTCAAACATGCTCTACTGGCAAGTTGAGAACCCGCTCTGCCGAACTGTTCATAGTGCTCTATAGAACCAATACTGATGAAAATACAGCAAACACGCTCTATCGATCATCTCGAAATGGAAGTTCAAATAATGGTAGAAAAGAAATGCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATACGCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATAAAATACAGCAAATACGCTCTACCGAACTTTCTAAGGGAAAGGCGCTCTATAGCGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATCAAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAATACGCTCTGCCGAACGTTCTAAGCGAAAATTCGCTCTATAGAAAAAATACAGCGAACACCCTCTGTCGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATACAGCAAACATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCTAGTTTTAATAAAATACAGCGAACACGCTCTGTCGAACTTTTTAAACGAAAATGCGTTCTGTAGAGAAAATACAGCAAACATGCTCTACCGAACTTTTTGAATGGAAATGCGCTCTATAGAGAAAATGCAGCAAATACGCTCTATCGAACTTTCCGAGTGAAAATGCGCTCCACCGAACTTTTTTTCTAGAATGGAAGTCCAAAAAACGCAATCTCTACCTCAACAACAAAACCCAATTATCCCAGAACGTGGCCACGATAAAGTGGATGGTCTGCTAGATGAAGATTGGGAAACCGATGAGGAGAGGGAAAAGAAAAAACAGAGGAAATTGAAAAAATTGGAAGATGCCAAATTTCATATGGTAGACGAGTTGGAAAAATTGGAAAAATCCCGAATGAAAACTGCCGAGGAG</canonical>
            <polymorphic>AGGTGAGAAAGTGCGCTCTATTGAGAATCTAGTGGAAATTCAAACATGCTCTACTGGCAAGTTGAGAACCCGCTCTGCCGAACTGTTCATAGTGCTCTATAGAACCAATACTGATGAAAATACAGCAAACACGCTCTATCGATCATCTCGAAATGGAAGTTCAAATAATGGTAGAAAAGAAATGCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATACGCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATAAAATACAGCAAATACGCTCTACCGAACTTTCTAAGGGAAAGGCGCTCTATAGCGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATCAAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAATACGCTCTGCCGAACGTTCTAAGCGAAAATTCGCTCTATAGAAAAAATACAGCGAACACCCTCTGTYGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATACAGCAAACATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCTAGTTTTAATAAAATACAGCGAACACGCTCTGTCGAACTTTTTAAACGAAAATGCGTTCTGTAGAGAAAATACAGCAAACATGCTCTACCGAACTTTTTGAATGGAAATGCGCTCTATAGAGAAAATGCAGCAAATACGCTCTATCGAACTTTCCGAGTGAAAATGCGCTCCACCGAACTTTTTTTCTAGAATGGAAGTCCAAAAAACGCAATCTCTACCTCAACAACAAAACCCAATTATCCCAGAACGTGGCCACGATAAAGTGGATGGTCTGCTAGATGAAGATTGGGAAACCGATGAGGAGAGGGAAAAGAAAAAACAGAGGAAATTGAAAAAATTGGAAGATGCCAAATTTCATATGGTAGACGAGTTGGAAAAATTGGAAAAATCCCGAATGAAAACTGCCGAGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>351 267 140 121 112 9</canonical_bands>
                <polymorphic_bands>472 267 140 112 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCGAGCTATTCTGATTAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCGTTTAAAAAGTTCGACAGA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAATACGCTCTGCCGAACGTTCTAAGCGAAAATTCGCTCTATAGAAAAAATACAGCGAACACCCTCTGTCGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATACAGCAAACATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCTAGTTTTAATAAAATACAGCGAACACGCTCTGTCGAACTTTTTAAACGA</canonical_amplicon>
		<polymorphic_amplicon>ACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAATACGCTCTGCCGAACGTTCTAAGCGAAAATTCGCTCTATAGAAAAAATACAGCGAACACCCTCTGTYGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATACAGCAAACATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCTAGTTTTAATAAAATACAGCGAACACGCTCTGTCGAACTTTTTAAACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8560</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>127952</contig_pos>
        <strand>+</strand>
        <context>ACTCTCCAAT[A/C]AAAATGCGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGCGCTCTATAGCGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAAT</left_flank>
        <right_flank>AAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGGGTTTTCAGAATGTCACGAGGATACGAAATTCTGGAAAAAAAATCGTGAAAAAATTGGAATTATTCTAGTTGGACTCGGTCATTTTCTTGTCAATTTTGGCGTCAAATTTTCTAGGTGAGAAAGTGCGCTCTATTGAGAATCTAGTGGAAATTCAAACATGCTCTACTGGCAAGTTGAGAACCCGCTCTGCCGAACTGTTCATAGTGCTCTATAGAACCAATACTGATGAAAATACAGCAAACACGCTCTATCGATCATCTCGAAATGGAAGTTCAAATAATGGTAGAAAAGAAATGCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATACGCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATAAAATACAGCAAATACGCTCTACCGAACTTTCTAAGGGAAAGGCGCTCTATAGCGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATCAAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAATACGCTCTGCCGAACGTTCTAAGCGAAAATTCGCTCTATAGAAAAAATACAGCGAACACCCTCTGTCGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATACAGCAAACATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCTAGTTTTAATAAAATACAGCGAACACGCTCTGTCGAACTTTTTAAACGAAAATGCGTTCTGTAGAGAAAATACAGCAAACATGCTCTACCGAACTTTTTGAATGGAAATGCGCTCTATAGAGAAAATGCAGCAAATACGCTCTATCGAACTTTCCGAGTGAAAATGCGCTCCACCGAACTTTTTTTCTAGAATGGAAGTCCAAAAAACGCAATCTCTACCTCAACAACAAAACCCAATTATCCCAGAACGTGGCCACGATAAAGTGGATGGTCTGCTAGATGAAGATTGGGAAAC</canonical>
            <polymorphic>TTTGGGGTTTTCAGAATGTCACGAGGATACGAAATTCTGGAAAAAAAATCGTGAAAAAATTGGAATTATTCTAGTTGGACTCGGTCATTTTCTTGTCAATTTTGGCGTCAAATTTTCTAGGTGAGAAAGTGCGCTCTATTGAGAATCTAGTGGAAATTCAAACATGCTCTACTGGCAAGTTGAGAACCCGCTCTGCCGAACTGTTCATAGTGCTCTATAGAACCAATACTGATGAAAATACAGCAAACACGCTCTATCGATCATCTCGAAATGGAAGTTCAAATAATGGTAGAAAAGAAATGCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATACGCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATAAAATACAGCAAATACGCTCTACCGAACTTTCTAAGGGAAAGGCGCTCTATAGCGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATMAAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAATACGCTCTGCCGAACGTTCTAAGCGAAAATTCGCTCTATAGAAAAAATACAGCGAACACCCTCTGTCGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATACAGCAAACATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCTAGTTTTAATAAAATACAGCGAACACGCTCTGTCGAACTTTTTAAACGAAAATGCGTTCTGTAGAGAAAATACAGCAAACATGCTCTACCGAACTTTTTGAATGGAAATGCGCTCTATAGAGAAAATGCAGCAAATACGCTCTATCGAACTTTCCGAGTGAAAATGCGCTCCACCGAACTTTTTTTCTAGAATGGAAGTCCAAAAAACGCAATCTCTACCTCAACAACAAAACCCAATTATCCCAGAACGTGGCCACGATAAAGTGGATGGTCTGCTAGATGAAGATTGGGAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTAAAACAGCCAGTATGCTCTA</pcr_primer_p1>
		<pcr_primer_p2>AGCGTATTTGTGGTATTTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATACGCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATAAAATACAGCAAATACGCTCTACCGAACTTTCTAAGGGAAAGGCGCTCTATAGCGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATCAAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAATACGCT</canonical_amplicon>
		<polymorphic_amplicon>AGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATACGCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATAAAATACAGCAAATACGCTCTACCGAACTTTCTAAGGGAAAGGCGCTCTATAGCGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATMAAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAATACGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8561</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>127914</contig_pos>
        <strand>+</strand>
        <context>CGCTCTATAG[A/C]GGCAGTGCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATACAGCAAATACGCTCTACCGAACTTTCTAAGGGAAAGGCGCTCTATAG</left_flank>
        <right_flank>GGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATCAAAATGCGCTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCTATTTATGGGGAAAAGTTGGGGGAAAAAACAAGGTTTTGGGGTTTTCAGAATGTCACGAGGATACGAAATTCTGGAAAAAAAATCGTGAAAAAATTGGAATTATTCTAGTTGGACTCGGTCATTTTCTTGTCAATTTTGGCGTCAAATTTTCTAGGTGAGAAAGTGCGCTCTATTGAGAATCTAGTGGAAATTCAAACATGCTCTACTGGCAAGTTGAGAACCCGCTCTGCCGAACTGTTCATAGTGCTCTATAGAACCAATACTGATGAAAATACAGCAAACACGCTCTATCGATCATCTCGAAATGGAAGTTCAAATAATGGTAGAAAAGAAATGCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATACGCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATAAAATACAGCAAATACGCTCTACCGAACTTTCTAAGGGAAAGGCGCTCTATAGCGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATCAAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAATACGCTCTGCCGAACGTTCTAAGCGAAAATTCGCTCTATAGAAAAAATACAGCGAACACCCTCTGTCGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATACAGCAAACATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCTAGTTTTAATAAAATACAGCGAACACGCTCTGTCGAACTTTTTAAACGAAAATGCGTTCTGTAGAGAAAATACAGCAAACATGCTCTACCGAACTTTTTGAATGGAAATGCGCTCTATAGAGAAAATGCAGCAAATACGCTCTATCGAACTTTCCGAGTGAAAATGCGCTCCACCGAACTTTTTTTCTAGAATGGAAGTCCAAAAAACGCAATCTCTACCTCAACAACAAAACCCAATTATCCCAGAACGTGGCCAC</canonical>
            <polymorphic>GGCTATTTATGGGGAAAAGTTGGGGGAAAAAACAAGGTTTTGGGGTTTTCAGAATGTCACGAGGATACGAAATTCTGGAAAAAAAATCGTGAAAAAATTGGAATTATTCTAGTTGGACTCGGTCATTTTCTTGTCAATTTTGGCGTCAAATTTTCTAGGTGAGAAAGTGCGCTCTATTGAGAATCTAGTGGAAATTCAAACATGCTCTACTGGCAAGTTGAGAACCCGCTCTGCCGAACTGTTCATAGTGCTCTATAGAACCAATACTGATGAAAATACAGCAAACACGCTCTATCGATCATCTCGAAATGGAAGTTCAAATAATGGTAGAAAAGAAATGCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATACGCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATAAAATACAGCAAATACGCTCTACCGAACTTTCTAAGGGAAAGGCGCTCTATAGMGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATCAAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAATACGCTCTGCCGAACGTTCTAAGCGAAAATTCGCTCTATAGAAAAAATACAGCGAACACCCTCTGTCGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATACAGCAAACATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCTAGTTTTAATAAAATACAGCGAACACGCTCTGTCGAACTTTTTAAACGAAAATGCGTTCTGTAGAGAAAATACAGCAAACATGCTCTACCGAACTTTTTGAATGGAAATGCGCTCTATAGAGAAAATGCAGCAAATACGCTCTATCGAACTTTCCGAGTGAAAATGCGCTCCACCGAACTTTTTTTCTAGAATGGAAGTCCAAAAAACGCAATCTCTACCTCAACAACAAAACCCAATTATCCCAGAACGTGGCCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>502 364 126 8</canonical_bands>
                <polymorphic_bands>510 364 126</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGCTCTATTGAAAGTCTAGTAA</pcr_primer_p1>
		<pcr_primer_p2>TTTGTGGTATTTTCTCAAAACTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATACGCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATAAAATACAGCAAATACGCTCTACCGAACTTTCTAAGGGAAAGGCGCTCTATAGCGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATCAAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAA</canonical_amplicon>
		<polymorphic_amplicon>GCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATACGCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATAAAATACAGCAAATACGCTCTACCGAACTTTCTAAGGGAAAGGCGCTCTATAGMGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATCAAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8562</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>127896</contig_pos>
        <strand>+</strand>
        <context>AACTTTCTAA[A/G]GGAAAGGCGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAGCTAATTTTAATAAAATACAGCAAATACGCTCTACCGAACTTTCTAA</left_flank>
        <right_flank>GGAAAGGCGCTCTATAGCGGCAGTGCAGCAAATACGGTCTTCCGAACTCT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTTGACGGTTTCGTGGCTATTTATGGGGAAAAGTTGGGGGAAAAAACAAGGTTTTGGGGTTTTCAGAATGTCACGAGGATACGAAATTCTGGAAAAAAAATCGTGAAAAAATTGGAATTATTCTAGTTGGACTCGGTCATTTTCTTGTCAATTTTGGCGTCAAATTTTCTAGGTGAGAAAGTGCGCTCTATTGAGAATCTAGTGGAAATTCAAACATGCTCTACTGGCAAGTTGAGAACCCGCTCTGCCGAACTGTTCATAGTGCTCTATAGAACCAATACTGATGAAAATACAGCAAACACGCTCTATCGATCATCTCGAAATGGAAGTTCAAATAATGGTAGAAAAGAAATGCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATACGCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATAAAATACAGCAAATACGCTCTACCGAACTTTCTAAGGGAAAGGCGCTCTATAGCGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATCAAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAATACGCTCTGCCGAACGTTCTAAGCGAAAATTCGCTCTATAGAAAAAATACAGCGAACACCCTCTGTCGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATACAGCAAACATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCTAGTTTTAATAAAATACAGCGAACACGCTCTGTCGAACTTTTTAAACGAAAATGCGTTCTGTAGAGAAAATACAGCAAACATGCTCTACCGAACTTTTTGAATGGAAATGCGCTCTATAGAGAAAATGCAGCAAATACGCTCTATCGAACTTTCCGAGTGAAAATGCGCTCCACCGAACTTTTTTTCTAGAATGGAAGTCCAAAAAACGCAATCTCTACCTCAACAACAAAACCCAATT</canonical>
            <polymorphic>ATTTTTTGACGGTTTCGTGGCTATTTATGGGGAAAAGTTGGGGGAAAAAACAAGGTTTTGGGGTTTTCAGAATGTCACGAGGATACGAAATTCTGGAAAAAAAATCGTGAAAAAATTGGAATTATTCTAGTTGGACTCGGTCATTTTCTTGTCAATTTTGGCGTCAAATTTTCTAGGTGAGAAAGTGCGCTCTATTGAGAATCTAGTGGAAATTCAAACATGCTCTACTGGCAAGTTGAGAACCCGCTCTGCCGAACTGTTCATAGTGCTCTATAGAACCAATACTGATGAAAATACAGCAAACACGCTCTATCGATCATCTCGAAATGGAAGTTCAAATAATGGTAGAAAAGAAATGCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATACGCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATAAAATACAGCAAATACGCTCTACCGAACTTTCTAARGGAAAGGCGCTCTATAGCGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATCAAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAATACGCTCTGCCGAACGTTCTAAGCGAAAATTCGCTCTATAGAAAAAATACAGCGAACACCCTCTGTCGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATACAGCAAACATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCTAGTTTTAATAAAATACAGCGAACACGCTCTGTCGAACTTTTTAAACGAAAATGCGTTCTGTAGAGAAAATACAGCAAACATGCTCTACCGAACTTTTTGAATGGAAATGCGCTCTATAGAGAAAATGCAGCAAATACGCTCTATCGAACTTTCCGAGTGAAAATGCGCTCCACCGAACTTTTTTTCTAGAATGGAAGTCCAAAAAACGCAATCTCTACCTCAACAACAAAACCCAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>449 374 130 47</canonical_bands>
                <polymorphic_bands>449 374 177</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGCTCTATTGAAAGTCTAGTAA</pcr_primer_p1>
		<pcr_primer_p2>TTTGTGGTATTTTCTCAAAACTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATACGCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATAAAATACAGCAAATACGCTCTACCGAACTTTCTAAGGGAAAGGCGCTCTATAGCGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATCAAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAA</canonical_amplicon>
		<polymorphic_amplicon>GCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATACGCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATAAAATACAGCAAATACGCTCTACCGAACTTTCTAARGGAAAGGCGCTCTATAGCGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATCAAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8563</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>127861</contig_pos>
        <strand>+</strand>
        <context>TAATTTTAAT[A/G]AAATACAGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAAT</left_flank>
        <right_flank>AAATACAGCAAATACGCTCTACCGAACTTTCTAAGGGAAAGGCGCTCTAT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTGTCACAGAGAGGAGAATTTAGAGAAAGATTGATTTTTTGACGGTTTCGTGGCTATTTATGGGGAAAAGTTGGGGGAAAAAACAAGGTTTTGGGGTTTTCAGAATGTCACGAGGATACGAAATTCTGGAAAAAAAATCGTGAAAAAATTGGAATTATTCTAGTTGGACTCGGTCATTTTCTTGTCAATTTTGGCGTCAAATTTTCTAGGTGAGAAAGTGCGCTCTATTGAGAATCTAGTGGAAATTCAAACATGCTCTACTGGCAAGTTGAGAACCCGCTCTGCCGAACTGTTCATAGTGCTCTATAGAACCAATACTGATGAAAATACAGCAAACACGCTCTATCGATCATCTCGAAATGGAAGTTCAAATAATGGTAGAAAAGAAATGCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATACGCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATAAAATACAGCAAATACGCTCTACCGAACTTTCTAAGGGAAAGGCGCTCTATAGCGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATCAAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAATACGCTCTGCCGAACGTTCTAAGCGAAAATTCGCTCTATAGAAAAAATACAGCGAACACCCTCTGTCGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATACAGCAAACATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCTAGTTTTAATAAAATACAGCGAACACGCTCTGTCGAACTTTTTAAACGAAAATGCGTTCTGTAGAGAAAATACAGCAAACATGCTCTACCGAACTTTTTGAATGGAAATGCGCTCTATAGAGAAAATGCAGCAAATACGCTCTATCGAACTTTCCGAGTGAAAATGCGCTCCACCGAACTTTTTTTCTAGAATGGAAGTCCAAA</canonical>
            <polymorphic>TGGTGTCACAGAGAGGAGAATTTAGAGAAAGATTGATTTTTTGACGGTTTCGTGGCTATTTATGGGGAAAAGTTGGGGGAAAAAACAAGGTTTTGGGGTTTTCAGAATGTCACGAGGATACGAAATTCTGGAAAAAAAATCGTGAAAAAATTGGAATTATTCTAGTTGGACTCGGTCATTTTCTTGTCAATTTTGGCGTCAAATTTTCTAGGTGAGAAAGTGCGCTCTATTGAGAATCTAGTGGAAATTCAAACATGCTCTACTGGCAAGTTGAGAACCCGCTCTGCCGAACTGTTCATAGTGCTCTATAGAACCAATACTGATGAAAATACAGCAAACACGCTCTATCGATCATCTCGAAATGGAAGTTCAAATAATGGTAGAAAAGAAATGCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATACGCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATRAAATACAGCAAATACGCTCTACCGAACTTTCTAAGGGAAAGGCGCTCTATAGCGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATCAAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAATACGCTCTGCCGAACGTTCTAAGCGAAAATTCGCTCTATAGAAAAAATACAGCGAACACCCTCTGTCGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATACAGCAAACATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCTAGTTTTAATAAAATACAGCGAACACGCTCTGTCGAACTTTTTAAACGAAAATGCGTTCTGTAGAGAAAATACAGCAAACATGCTCTACCGAACTTTTTGAATGGAAATGCGCTCTATAGAGAAAATGCAGCAAATACGCTCTATCGAACTTTCCGAGTGAAAATGCGCTCCACCGAACTTTTTTTCTAGAATGGAAGTCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGCTCTATTGAAAGTCTAGTAA</pcr_primer_p1>
		<pcr_primer_p2>TTTGTGGTATTTTCTCAAAACTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATACGCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATAAAATACAGCAAATACGCTCTACCGAACTTTCTAAGGGAAAGGCGCTCTATAGCGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATCAAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAA</canonical_amplicon>
		<polymorphic_amplicon>GCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATACGCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATRAAATACAGCAAATACGCTCTACCGAACTTTCTAAGGGAAAGGCGCTCTATAGCGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATCAAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8564</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>127812</contig_pos>
        <strand>+</strand>
        <context>TTGCAAATAC[A/G]CTCCACCGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATAC</left_flank>
        <right_flank>CTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTAAGCTTACTGTTGAATCGTTACGCTTGATGGACCATTTCGAAGATTGGTGTCACAGAGAGGAGAATTTAGAGAAAGATTGATTTTTTGACGGTTTCGTGGCTATTTATGGGGAAAAGTTGGGGGAAAAAACAAGGTTTTGGGGTTTTCAGAATGTCACGAGGATACGAAATTCTGGAAAAAAAATCGTGAAAAAATTGGAATTATTCTAGTTGGACTCGGTCATTTTCTTGTCAATTTTGGCGTCAAATTTTCTAGGTGAGAAAGTGCGCTCTATTGAGAATCTAGTGGAAATTCAAACATGCTCTACTGGCAAGTTGAGAACCCGCTCTGCCGAACTGTTCATAGTGCTCTATAGAACCAATACTGATGAAAATACAGCAAACACGCTCTATCGATCATCTCGAAATGGAAGTTCAAATAATGGTAGAAAAGAAATGCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATACGCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATAAAATACAGCAAATACGCTCTACCGAACTTTCTAAGGGAAAGGCGCTCTATAGCGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATCAAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAATACGCTCTGCCGAACGTTCTAAGCGAAAATTCGCTCTATAGAAAAAATACAGCGAACACCCTCTGTCGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATACAGCAAACATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCTAGTTTTAATAAAATACAGCGAACACGCTCTGTCGAACTTTTTAAACGAAAATGCGTTCTGTAGAGAAAATACAGCAAACATGCTCTACCGAACTTTTTGAATGGAAATGCGCTCTATAGAGAAAATGCAGCAAATACGCTCTATCGAACTTTCC</canonical>
            <polymorphic>TAGTAAGCTTACTGTTGAATCGTTACGCTTGATGGACCATTTCGAAGATTGGTGTCACAGAGAGGAGAATTTAGAGAAAGATTGATTTTTTGACGGTTTCGTGGCTATTTATGGGGAAAAGTTGGGGGAAAAAACAAGGTTTTGGGGTTTTCAGAATGTCACGAGGATACGAAATTCTGGAAAAAAAATCGTGAAAAAATTGGAATTATTCTAGTTGGACTCGGTCATTTTCTTGTCAATTTTGGCGTCAAATTTTCTAGGTGAGAAAGTGCGCTCTATTGAGAATCTAGTGGAAATTCAAACATGCTCTACTGGCAAGTTGAGAACCCGCTCTGCCGAACTGTTCATAGTGCTCTATAGAACCAATACTGATGAAAATACAGCAAACACGCTCTATCGATCATCTCGAAATGGAAGTTCAAATAATGGTAGAAAAGAAATGCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATACRCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATAAAATACAGCAAATACGCTCTACCGAACTTTCTAAGGGAAAGGCGCTCTATAGCGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATCAAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAATACGCTCTGCCGAACGTTCTAAGCGAAAATTCGCTCTATAGAAAAAATACAGCGAACACCCTCTGTCGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATACAGCAAACATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCTAGTTTTAATAAAATACAGCGAACACGCTCTGTCGAACTTTTTAAACGAAAATGCGTTCTGTAGAGAAAATACAGCAAACATGCTCTACCGAACTTTTTGAATGGAAATGCGCTCTATAGAGAAAATGCAGCAAATACGCTCTATCGAACTTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGCTCTATTGAAAGTCTAGTAA</pcr_primer_p1>
		<pcr_primer_p2>TTTGTGGTATTTTCTCAAAACTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATACGCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATAAAATACAGCAAATACGCTCTACCGAACTTTCTAAGGGAAAGGCGCTCTATAGCGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATCAAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAA</canonical_amplicon>
		<polymorphic_amplicon>GCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATACRCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATAAAATACAGCAAATACGCTCTACCGAACTTTCTAAGGGAAAGGCGCTCTATAGCGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATCAAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8565</snp_id>
        <super_contig>c004700889.Contig3</super_contig>
        <contig_pos>4070</contig_pos>
        <strand>+</strand>
        <context>GAATTTTCAA[A/G]TAAAAGTCGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCGATAAAACTGGAATTTTTACGTGAAATCAAAAGTTTGAATTTTCAA</left_flank>
        <right_flank>TAAAAGTCGATATTTACTTTTACGTGAAAATTTTTCAAAAAAATCGATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCGATTTTTGAAAATTCGAAAAAATAAAAATTTTATAAAAATAAAAATTTCCCAAATTTCAGTGTTTTTTAGTTCAGATTTTGCCGATTTTTGTATATTCAAAGCGAGAAAAACCCGCTGAAAATCGTCAAAAAAATGAATTATTCTGAAATTTCAGCTCCTGATGACGTTCCTACTGTACTACTCCACCATCACCTCAATCGATCAATACTCAAAAACGGCGAGAACGAATCCGAACTATCATTCCACCGCGTTCATCATTTTCGCATTCATTACCTCGTGTTTCTATGCGATTATGGTGAATATATCTAATTCGCTCTATTGAGAAGACCTGTTCGGTGGACCGCGTTTGAATTTTTGAAAATTCAGAAAAATCGATAAAATTGGATTTTTCACGTGAAAATTCAAATTTTAAAAAAATCGATTTTTAAGTGAAAAATTTCATAAAATCGATAAAACTGGAATTTTTACGTGAAATCAAAAGTTTGAATTTTCAAGTAAAAGTCGATATTTACTTTTACGTGAAAATTTTTCAAAAAAATCGATAAATTTCGAATTTTTTACGTAAAAATCGATTTTTAAGTTCACGTGAAAATTGTTCAAAAATCGATAAAATTGAATTTTTACGTGAAAATTCCAACTTTTACAATAATCGATTTTTACGTGAAAAATCGATAAATTCACGAGAAAATCTATAAATTTGAATTTTCACGTAAAAAATCGAATCTCGAATTTCCGGTCGGAAAACGCGCTCCATCTCACACAACCTAATTTTTCCACGAAAAAATCGATAAGTGACCCTTTTCACAGCTCGTGATCCACTTCGCCACACTGTACTACATGATGATCTACCCAATCACCCCATTGACGTCTCCCTATACACTATCCAACGCGAATTACTCACAAATGAACTACGGACCATTGGGAGTTGGAAGTAATGGAAGTGGTGGGCGGAGTCAGCATTATGAGGTGAAAAAATCAATAAAAATCGACGAAAA</canonical>
            <polymorphic>AATCGATTTTTGAAAATTCGAAAAAATAAAAATTTTATAAAAATAAAAATTTCCCAAATTTCAGTGTTTTTTAGTTCAGATTTTGCCGATTTTTGTATATTCAAAGCGAGAAAAACCCGCTGAAAATCGTCAAAAAAATGAATTATTCTGAAATTTCAGCTCCTGATGACGTTCCTACTGTACTACTCCACCATCACCTCAATCGATCAATACTCAAAAACGGCGAGAACGAATCCGAACTATCATTCCACCGCGTTCATCATTTTCGCATTCATTACCTCGTGTTTCTATGCGATTATGGTGAATATATCTAATTCGCTCTATTGAGAAGACCTGTTCGGTGGACCGCGTTTGAATTTTTGAAAATTCAGAAAAATCGATAAAATTGGATTTTTCACGTGAAAATTCAAATTTTAAAAAAATCGATTTTTAAGTGAAAAATTTCATAAAATCGATAAAACTGGAATTTTTACGTGAAATCAAAAGTTTGAATTTTCAARTAAAAGTCGATATTTACTTTTACGTGAAAATTTTTCAAAAAAATCGATAAATTTCGAATTTTTTACGTAAAAATCGATTTTTAAGTTCACGTGAAAATTGTTCAAAAATCGATAAAATTGAATTTTTACGTGAAAATTCCAACTTTTACAATAATCGATTTTTACGTGAAAAATCGATAAATTCACGAGAAAATCTATAAATTTGAATTTTCACGTAAAAAATCGAATCTCGAATTTCCGGTCGGAAAACGCGCTCCATCTCACACAACCTAATTTTTCCACGAAAAAATCGATAAGTGACCCTTTTCACAGCTCGTGATCCACTTCGCCACACTGTACTACATGATGATCTACCCAATCACCCCATTGACGTCTCCCTATACACTATCCAACGCGAATTACTCACAAATGAACTACGGACCATTGGGAGTTGGAAGTAATGGAAGTGGTGGGCGGAGTCAGCATTATGAGGTGAAAAAATCAATAAAAATCGACGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCATAAAATCGATAAAACTGG</pcr_primer_p1>
		<pcr_primer_p2>GTAAAAGTTGGAATTTTCACGTA</pcr_primer_p2>
		<pcr_amplicon_size>208</pcr_amplicon_size>
		<canonical_amplicon>TTTCATAAAATCGATAAAACTGGAATTTTTACGTGAAATCAAAAGTTTGAATTTTCAAGTAAAAGTCGATATTTACTTTTACGTGAAAATTTTTCAAAAAAATCGATAAATTTCGAATTTTTTACGTAAAAATCGATTTTTAAGTTCACGTGAAAATTGTTCAAAAATCGATAAAATTGAATTTTTACGTGAAAATTCCAACTTTTAC</canonical_amplicon>
		<polymorphic_amplicon>TTTCATAAAATCGATAAAACTGGAATTTTTACGTGAAATCAAAAGTTTGAATTTTCAARTAAAAGTCGATATTTACTTTTACGTGAAAATTTTTCAAAAAAATCGATAAATTTCGAATTTTTTACGTAAAAATCGATTTTTAAGTTCACGTGAAAATTGTTCAAAAATCGATAAAATTGAATTTTTACGTGAAAATTCCAACTTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8568</snp_id>
        <super_contig>c004700889.Contig3</super_contig>
        <contig_pos>4947</contig_pos>
        <strand></strand>
        <context>gatttttttw[A/T]aaattCCTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTAATTTTTTTAATTATTGATTTTTTTTTCAAATTCATTGATTTTTTTA</left_flank>
        <right_flank>AAATTCCTGTCAGAGAGAAAGCATGTAATATTTTGAAAAGATATAATATT</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATACACTATCCAACGCGAATTACTCACAAATGAACTACGGACCATTGGGAGTTGGAAGTAATGGAAGTGGTGGGCGGAGTCAGCATTATGAGGTGAAAAAATCAATAAAAATCGACGAAAAATGAGCAACTTGAGCCTAGAAAAGGTCTGGTGGCCTAGTTTTCAAATTTCTAGGCCACGACCCATGGCCTAACTTTTCCCCAATTTTCTAGGCCATGCAACCGCCACTGCTCGCCGACTCTTATCGATTATCAGTGAACAATTGGCAAGCGGCCAACGAGACACGTGGCACCGTCAGCACCTACTCGCACGTTCGCAGCTGGAACAACACGTTGAGATCTACGGTAGGTGCAAGTGCGCTCCATTGGACTTTTCCCAAATTTTAGGCCACCTCACGCAACCAACGTGCCGCACTGCGTGACGACGACAACGACTACTTGGAGCTGATCTAATTTTTTTAATTATTGATTTTTTTTTCAAATTCATTGATTTTTTTAAAAATTCCTGTCAGAGAGAAAGCATGTAATATTTTGAAAAGATATAATATTTGTTTGGCTTAAAACTATGTCTTAAATTAGCGAAAATCAACAAAAAAAGCCTACAAAATTTCATCAAACAGTTCGGGGAGAAAAATGGCGGGAAATTTGAAAAATTAGAAATTCAAAAAATAAGAAATTAATGAGAGGTAACACTGGAAGCGGATTGGCTGAAAGAAGTGGATAACAGCGACATTGCGTTGCCCTGAGACGGTCCCGCCACGTTGATCGACGTGGCTGGCTGTGGACCCGATCGGGGTACTGTAGTGCGTTTACGTGGTTTCTGATCGCCCATCATTTGGCGTTTAACGAGTTTGGCATAGGTGCCTTCGGTGTCTTTGAGGAGGCTCTCGTGGTTTCCGATTTGCTCGACGCGGCCCTGCAAAAAACGGATTGTTGGGGTTTTTGGCGGTGGAGCGCGTTTGCTTAATACATGGGAAAAGTGGGCGGAGCCTAAGTTGT</canonical>
            <polymorphic>CTATACACTATCCAACGCGAATTACTCACAAATGAACTACGGACCATTGGGAGTTGGAAGTAATGGAAGTGGTGGGCGGAGTCAGCATTATGAGGTGAAAAAATCAATAAAAATCGACGAAAAATGAGCAACTTGAGCCTAGAAAAGGTCTGGTGGCCTAGTTTTCAAATTTCTAGGCCACGACCCATGGCCTAACTTTTCCCCAATTTTCTAGGCCATGCAACCGCCACTGCTCGCCGACTCTTATCGATTATCAGTGAACAATTGGCAAGCGGCCAACGAGACACGTGGCACCGTCAGCACCTACTCGCACGTTCGCAGCTGGAACAACACGTTGAGATCTACGGTAGGTGCAAGTGCGCTCCATTGGACTTTTCCCAAATTTTAGGCCACCTCACGCAACCAACGTGCCGCACTGCGTGACGACGACAACGACTACTTGGAGCTGATCTAATTTTTTTAATTATTGATTTTTTTTTCAAATTCATTGATTTTTTTAWAAATTCCTGTCAGAGAGAAAGCATGTAATATTTTGAAAAGATATAATATTTGTTTGGCTTAAAACTATGTCTTAAATTAGCGAAAATCAACAAAAAAAGCCTACAAAATTTCATCAAACAGTTCGGGGAGAAAAATGGCGGGAAATTTGAAAAATTAGAAATTCAAAAAATAAGAAATTAATGAGAGGTAACACTGGAAGCGGATTGGCTGAAAGAAGTGGATAACAGCGACATTGCGTTGCCCTGAGACGGTCCCGCCACGTTGATCGACGTGGCTGGCTGTGGACCCGATCGGGGTACTGTAGTGCGTTTACGTGGTTTCTGATCGCCCATCATTTGGCGTTTAACGAGTTTGGCATAGGTGCCTTCGGTGTCTTTGAGGAGGCTCTCGTGGTTTCCGATTTGCTCGACGCGGCCCTGCAAAAAACGGATTGTTGGGGTTTTTGGCGGTGGAGCGCGTTTGCTTAATACATGGGAAAAGTGGGCGGAGCCTAAGTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>460 166 121 106 62 37 35 13</canonical_bands>
                <polymorphic_bands>460 166 121 106 99 35 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTACGGTAGGTGCAAGTG</pcr_primer_p1>
		<pcr_primer_p2>TGATTTTCGCTAATTTAAGACAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTACGGTAGGTGCAAGTGCGCTCCATTGGACTTTTCCCAAATTTTAGGCCACCTCACGCAACCAACGTGCCGCACTGCGTGACGACGACAACGACTACTTGGAGCTGATCTAATTTTTTTAATTATTGATTTTTTTTTCAAATTCATTGATTTTTTTAAAAATTCCTGTCAGAGAGAAAGCATGTAATATTTTGAAAAGATATAATATTTGTTTGGCTTAAAACTATGTCTTAAATTAGCGAAAATCA</canonical_amplicon>
		<polymorphic_amplicon>ATCTACGGTAGGTGCAAGTGCGCTCCATTGGACTTTTCCCAAATTTTAGGCCACCTCACGCAACCAACGTGCCGCACTGCGTGACGACGACAACGACTACTTGGAGCTGATCTAATTTTTTTAATTATTGATTTTTTTTTCAAATTCATTGATTTTTTTAWAAATTCCTGTCAGAGAGAAAGCATGTAATATTTTGAAAAGATATAATATTTGTTTGGCTTAAAACTATGTCTTAAATTAGCGAAAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8569</snp_id>
        <super_contig>c004700889.Contig3</super_contig>
        <contig_pos>4946</contig_pos>
        <strand></strand>
        <context>tgattttttt[A/T]waaattCCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCTAATTTTTTTAATTATTGATTTTTTTTTCAAATTCATTGATTTTTTT</left_flank>
        <right_flank>AAAATTCCTGTCAGAGAGAAAGCATGTAATATTTTGAAAAGATATAATAT</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTATACACTATCCAACGCGAATTACTCACAAATGAACTACGGACCATTGGGAGTTGGAAGTAATGGAAGTGGTGGGCGGAGTCAGCATTATGAGGTGAAAAAATCAATAAAAATCGACGAAAAATGAGCAACTTGAGCCTAGAAAAGGTCTGGTGGCCTAGTTTTCAAATTTCTAGGCCACGACCCATGGCCTAACTTTTCCCCAATTTTCTAGGCCATGCAACCGCCACTGCTCGCCGACTCTTATCGATTATCAGTGAACAATTGGCAAGCGGCCAACGAGACACGTGGCACCGTCAGCACCTACTCGCACGTTCGCAGCTGGAACAACACGTTGAGATCTACGGTAGGTGCAAGTGCGCTCCATTGGACTTTTCCCAAATTTTAGGCCACCTCACGCAACCAACGTGCCGCACTGCGTGACGACGACAACGACTACTTGGAGCTGATCTAATTTTTTTAATTATTGATTTTTTTTTCAAATTCATTGATTTTTTTAAAAATTCCTGTCAGAGAGAAAGCATGTAATATTTTGAAAAGATATAATATTTGTTTGGCTTAAAACTATGTCTTAAATTAGCGAAAATCAACAAAAAAAGCCTACAAAATTTCATCAAACAGTTCGGGGAGAAAAATGGCGGGAAATTTGAAAAATTAGAAATTCAAAAAATAAGAAATTAATGAGAGGTAACACTGGAAGCGGATTGGCTGAAAGAAGTGGATAACAGCGACATTGCGTTGCCCTGAGACGGTCCCGCCACGTTGATCGACGTGGCTGGCTGTGGACCCGATCGGGGTACTGTAGTGCGTTTACGTGGTTTCTGATCGCCCATCATTTGGCGTTTAACGAGTTTGGCATAGGTGCCTTCGGTGTCTTTGAGGAGGCTCTCGTGGTTTCCGATTTGCTCGACGCGGCCCTGCAAAAAACGGATTGTTGGGGTTTTTGGCGGTGGAGCGCGTTTGCTTAATACATGGGAAAAGTGGGCGGAGCCTAAGTTG</canonical>
            <polymorphic>CCTATACACTATCCAACGCGAATTACTCACAAATGAACTACGGACCATTGGGAGTTGGAAGTAATGGAAGTGGTGGGCGGAGTCAGCATTATGAGGTGAAAAAATCAATAAAAATCGACGAAAAATGAGCAACTTGAGCCTAGAAAAGGTCTGGTGGCCTAGTTTTCAAATTTCTAGGCCACGACCCATGGCCTAACTTTTCCCCAATTTTCTAGGCCATGCAACCGCCACTGCTCGCCGACTCTTATCGATTATCAGTGAACAATTGGCAAGCGGCCAACGAGACACGTGGCACCGTCAGCACCTACTCGCACGTTCGCAGCTGGAACAACACGTTGAGATCTACGGTAGGTGCAAGTGCGCTCCATTGGACTTTTCCCAAATTTTAGGCCACCTCACGCAACCAACGTGCCGCACTGCGTGACGACGACAACGACTACTTGGAGCTGATCTAATTTTTTTAATTATTGATTTTTTTTTCAAATTCATTGATTTTTTTWAAAATTCCTGTCAGAGAGAAAGCATGTAATATTTTGAAAAGATATAATATTTGTTTGGCTTAAAACTATGTCTTAAATTAGCGAAAATCAACAAAAAAAGCCTACAAAATTTCATCAAACAGTTCGGGGAGAAAAATGGCGGGAAATTTGAAAAATTAGAAATTCAAAAAATAAGAAATTAATGAGAGGTAACACTGGAAGCGGATTGGCTGAAAGAAGTGGATAACAGCGACATTGCGTTGCCCTGAGACGGTCCCGCCACGTTGATCGACGTGGCTGGCTGTGGACCCGATCGGGGTACTGTAGTGCGTTTACGTGGTTTCTGATCGCCCATCATTTGGCGTTTAACGAGTTTGGCATAGGTGCCTTCGGTGTCTTTGAGGAGGCTCTCGTGGTTTCCGATTTGCTCGACGCGGCCCTGCAAAAAACGGATTGTTGGGGTTTTTGGCGGTGGAGCGCGTTTGCTTAATACATGGGAAAAGTGGGCGGAGCCTAAGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>461 166 121 106 62 37 34 13</canonical_bands>
                <polymorphic_bands>461 166 121 106 99 34 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTACGGTAGGTGCAAGTG</pcr_primer_p1>
		<pcr_primer_p2>TGATTTTCGCTAATTTAAGACAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTACGGTAGGTGCAAGTGCGCTCCATTGGACTTTTCCCAAATTTTAGGCCACCTCACGCAACCAACGTGCCGCACTGCGTGACGACGACAACGACTACTTGGAGCTGATCTAATTTTTTTAATTATTGATTTTTTTTTCAAATTCATTGATTTTTTTAAAAATTCCTGTCAGAGAGAAAGCATGTAATATTTTGAAAAGATATAATATTTGTTTGGCTTAAAACTATGTCTTAAATTAGCGAAAATCA</canonical_amplicon>
		<polymorphic_amplicon>ATCTACGGTAGGTGCAAGTGCGCTCCATTGGACTTTTCCCAAATTTTAGGCCACCTCACGCAACCAACGTGCCGCACTGCGTGACGACGACAACGACTACTTGGAGCTGATCTAATTTTTTTAATTATTGATTTTTTTTTCAAATTCATTGATTTTTTTWAAAATTCCTGTCAGAGAGAAAGCATGTAATATTTTGAAAAGATATAATATTTGTTTGGCTTAAAACTATGTCTTAAATTAGCGAAAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8643</snp_id>
        <super_contig>c004700889.Contig3</super_contig>
        <contig_pos>13521</contig_pos>
        <strand>+</strand>
        <context>CTTGTCTACA[A/C]GATGACTAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTCTGAATTCCATCGATTTTTTGGCATGTCTTTTGTTCGCTTGTCTACA</left_flank>
        <right_flank>GATGACTAAACGCGCTCTATCGGACTGATTAGTGTAAGCAAAAATTGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTTTTTTTTTTTGGGAAAAAAGAAAAATTGGGCAAAATTGTAAATTGACAGTTGAAATCTTTCGTTTCGCTGCTGCTTATCAGTTACTGATAAGAGAGAGAGAGGGAGAAAGAGTATTTGGAAAGTTGCAATTTGTGTGTGCTCCCCCAAAAGTCATTAGAATTATTATTATTATCAATTTGGGGGTTTTTGGAAAGTTCTGGAAAATCTGGAAAATTAAAAAAATGGATGTTTTATAAATGAATCAAAGAATACACAGTTTTCTAGATCGAGGAGAGGGAAAAAATAAAAAAATCGATAATTTATTTGTTATTGATGAGACGATTGGCGACGGTGTTCACACTCGATGGCACGTTTTCGATGGTGGTGAAGACCTGGAAATTGCAGAATTTTCAGTAAATTTGTGAAAATCAAAATTTCATCCAAAAAAGGAGTTCTTTGGGACTAATTCTGAATTCCATCGATTTTTTGGCATGTCTTTTGTTCGCTTGTCTACACGATGACTAAACGCGCTCTATCGGACTGATTAGTGTAAGCAAAAATTGAAAGTGCGCCCTAATGAGATTTTCCAAAAAAATTTGGCCAACGCGCTCTATCGAAATCATTGGGGAAAAGTAGGAAATGTGCTTTCTAGAAAACACTTGAAATTGCTCTTTTCTGAACATAGATTTTAGAAAGTGCGCTCTATTGAGAGTTTGCTGTAAACGAGCTCTACCGGACTGAGAAAATTGGAACTGTTAAAATGACAAACGCGCTCCAATGAACAAGAGTTTTAGAAAGTACGCTCTATTAATAATATTCTGAAGAACGGGGTAAACGCGTTCCATCAGACTGATTCGTGGAATCTGAGGATTAGAAAGTGCGCTCTATCGAACTTTCTAGAAAAACAGTTGAAAATGTGCTCTACCGAACTCAGTGGAAGTGCGCTCTATTTATAATTTGCTGAAAAAGGTAAACGCGCTGTATCGAACGGAGAAAGTGCGCTCCATTGATAATTT</canonical>
            <polymorphic>TCCTTTTTTTTTTTGGGAAAAAAGAAAAATTGGGCAAAATTGTAAATTGACAGTTGAAATCTTTCGTTTCGCTGCTGCTTATCAGTTACTGATAAGAGAGAGAGAGGGAGAAAGAGTATTTGGAAAGTTGCAATTTGTGTGTGCTCCCCCAAAAGTCATTAGAATTATTATTATTATCAATTTGGGGGTTTTTGGAAAGTTCTGGAAAATCTGGAAAATTAAAAAAATGGATGTTTTATAAATGAATCAAAGAATACACAGTTTTCTAGATCGAGGAGAGGGAAAAAATAAAAAAATCGATAATTTATTTGTTATTGATGAGACGATTGGCGACGGTGTTCACACTCGATGGCACGTTTTCGATGGTGGTGAAGACCTGGAAATTGCAGAATTTTCAGTAAATTTGTGAAAATCAAAATTTCATCCAAAAAAGGAGTTCTTTGGGACTAATTCTGAATTCCATCGATTTTTTGGCATGTCTTTTGTTCGCTTGTCTACAMGATGACTAAACGCGCTCTATCGGACTGATTAGTGTAAGCAAAAATTGAAAGTGCGCCCTAATGAGATTTTCCAAAAAAATTTGGCCAACGCGCTCTATCGAAATCATTGGGGAAAAGTAGGAAATGTGCTTTCTAGAAAACACTTGAAATTGCTCTTTTCTGAACATAGATTTTAGAAAGTGCGCTCTATTGAGAGTTTGCTGTAAACGAGCTCTACCGGACTGAGAAAATTGGAACTGTTAAAATGACAAACGCGCTCCAATGAACAAGAGTTTTAGAAAGTACGCTCTATTAATAATATTCTGAAGAACGGGGTAAACGCGTTCCATCAGACTGATTCGTGGAATCTGAGGATTAGAAAGTGCGCTCTATCGAACTTTCTAGAAAAACAGTTGAAAATGTGCTCTACCGAACTCAGTGGAAGTGCGCTCTATTTATAATTTGCTGAAAAAGGTAAACGCGCTGTATCGAACGGAGAAAGTGCGCTCCATTGATAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>161 139 115 91 80 75 57 40 39 37 35 21 19 17 17 14 14 10 6 4 3 2 2 2</canonical_bands>
                <polymorphic_bands>161 139 126 115 80 75 57 40 39 37 21 19 17 17 14 14 10 6 4 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAGTAAATTTGTGAAAATCAA</pcr_primer_p1>
		<pcr_primer_p2>TTCTAGAAAGCACATTTCCTACT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTCAGTAAATTTGTGAAAATCAAAATTTCATCCAAAAAAGGAGTTCTTTGGGACTAATTCTGAATTCCATCGATTTTTTGGCATGTCTTTTGTTCGCTTGTCTACACGATGACTAAACGCGCTCTATCGGACTGATTAGTGTAAGCAAAAATTGAAAGTGCGCCCTAATGAGATTTTCCAAAAAAATTTGGCCAACGCGCTCTATCGAAATCATTGGGGAAAAGTAGGAAATGTGCTTTCTAGAA</canonical_amplicon>
		<polymorphic_amplicon>TTCAGTAAATTTGTGAAAATCAAAATTTCATCCAAAAAAGGAGTTCTTTGGGACTAATTCTGAATTCCATCGATTTTTTGGCATGTCTTTTGTTCGCTTGTCTACAMGATGACTAAACGCGCTCTATCGGACTGATTAGTGTAAGCAAAAATTGAAAGTGCGCCCTAATGAGATTTTCCAAAAAAATTTGGCCAACGCGCTCTATCGAAATCATTGGGGAAAAGTAGGAAATGTGCTTTCTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8644</snp_id>
        <super_contig>c004700889.Contig3</super_contig>
        <contig_pos>13445</contig_pos>
        <strand>+</strand>
        <context>CAAAATTTCA[G/T]CCAAAAAAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GACCTGGAAATTGCAGAATTTTCAGTAAATTTGTGAAAATCAAAATTTCA</left_flank>
        <right_flank>CCAAAAAAGGAGTTCTTTGGGACTAATTCTGAATTCCATCGATTTTTTGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACCGCTGAGTTCATTTTTGGCTGAAAATTTGGATTTTCAGAAATTTTTCAAAAAAAATTTTTTTTTTTGAAATTTCCTTTTTTTTTTTGGGAAAAAAGAAAAATTGGGCAAAATTGTAAATTGACAGTTGAAATCTTTCGTTTCGCTGCTGCTTATCAGTTACTGATAAGAGAGAGAGAGGGAGAAAGAGTATTTGGAAAGTTGCAATTTGTGTGTGCTCCCCCAAAAGTCATTAGAATTATTATTATTATCAATTTGGGGGTTTTTGGAAAGTTCTGGAAAATCTGGAAAATTAAAAAAATGGATGTTTTATAAATGAATCAAAGAATACACAGTTTTCTAGATCGAGGAGAGGGAAAAAATAAAAAAATCGATAATTTATTTGTTATTGATGAGACGATTGGCGACGGTGTTCACACTCGATGGCACGTTTTCGATGGTGGTGAAGACCTGGAAATTGCAGAATTTTCAGTAAATTTGTGAAAATCAAAATTTCATCCAAAAAAGGAGTTCTTTGGGACTAATTCTGAATTCCATCGATTTTTTGGCATGTCTTTTGTTCGCTTGTCTACACGATGACTAAACGCGCTCTATCGGACTGATTAGTGTAAGCAAAAATTGAAAGTGCGCCCTAATGAGATTTTCCAAAAAAATTTGGCCAACGCGCTCTATCGAAATCATTGGGGAAAAGTAGGAAATGTGCTTTCTAGAAAACACTTGAAATTGCTCTTTTCTGAACATAGATTTTAGAAAGTGCGCTCTATTGAGAGTTTGCTGTAAACGAGCTCTACCGGACTGAGAAAATTGGAACTGTTAAAATGACAAACGCGCTCCAATGAACAAGAGTTTTAGAAAGTACGCTCTATTAATAATATTCTGAAGAACGGGGTAAACGCGTTCCATCAGACTGATTCGTGGAATCTGAGGATTAGAAAGTGCGCTCTATCGAACTTTCTAGAAAAACAGTTGAAAATGTGCTCTACCGAACTCAGTGGAAG</canonical>
            <polymorphic>CGACCGCTGAGTTCATTTTTGGCTGAAAATTTGGATTTTCAGAAATTTTTCAAAAAAAATTTTTTTTTTTGAAATTTCCTTTTTTTTTTTGGGAAAAAAGAAAAATTGGGCAAAATTGTAAATTGACAGTTGAAATCTTTCGTTTCGCTGCTGCTTATCAGTTACTGATAAGAGAGAGAGAGGGAGAAAGAGTATTTGGAAAGTTGCAATTTGTGTGTGCTCCCCCAAAAGTCATTAGAATTATTATTATTATCAATTTGGGGGTTTTTGGAAAGTTCTGGAAAATCTGGAAAATTAAAAAAATGGATGTTTTATAAATGAATCAAAGAATACACAGTTTTCTAGATCGAGGAGAGGGAAAAAATAAAAAAATCGATAATTTATTTGTTATTGATGAGACGATTGGCGACGGTGTTCACACTCGATGGCACGTTTTCGATGGTGGTGAAGACCTGGAAATTGCAGAATTTTCAGTAAATTTGTGAAAATCAAAATTTCAKCCAAAAAAGGAGTTCTTTGGGACTAATTCTGAATTCCATCGATTTTTTGGCATGTCTTTTGTTCGCTTGTCTACACGATGACTAAACGCGCTCTATCGGACTGATTAGTGTAAGCAAAAATTGAAAGTGCGCCCTAATGAGATTTTCCAAAAAAATTTGGCCAACGCGCTCTATCGAAATCATTGGGGAAAAGTAGGAAATGTGCTTTCTAGAAAACACTTGAAATTGCTCTTTTCTGAACATAGATTTTAGAAAGTGCGCTCTATTGAGAGTTTGCTGTAAACGAGCTCTACCGGACTGAGAAAATTGGAACTGTTAAAATGACAAACGCGCTCCAATGAACAAGAGTTTTAGAAAGTACGCTCTATTAATAATATTCTGAAGAACGGGGTAAACGCGTTCCATCAGACTGATTCGTGGAATCTGAGGATTAGAAAGTGCGCTCTATCGAACTTTCTAGAAAAACAGTTGAAAATGTGCTCTACCGAACTCAGTGGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGTTATTGATGAGACGATTG</pcr_primer_p1>
		<pcr_primer_p2>CACTTTCAATTTTTGCTTACACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTTGTTATTGATGAGACGATTGGCGACGGTGTTCACACTCGATGGCACGTTTTCGATGGTGGTGAAGACCTGGAAATTGCAGAATTTTCAGTAAATTTGTGAAAATCAAAATTTCATCCAAAAAAGGAGTTCTTTGGGACTAATTCTGAATTCCATCGATTTTTTGGCATGTCTTTTGTTCGCTTGTCTACACGATGACTAAACGCGCTCTATCGGACTGATTAGTGTAAGCAAAAATTGAAAGTG</canonical_amplicon>
		<polymorphic_amplicon>ATTTGTTATTGATGAGACGATTGGCGACGGTGTTCACACTCGATGGCACGTTTTCGATGGTGGTGAAGACCTGGAAATTGCAGAATTTTCAGTAAATTTGTGAAAATCAAAATTTCAKCCAAAAAAGGAGTTCTTTGGGACTAATTCTGAATTCCATCGATTTTTTGGCATGTCTTTTGTTCGCTTGTCTACACGATGACTAAACGCGCTCTATCGGACTGATTAGTGTAAGCAAAAATTGAAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8645</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>42078</contig_pos>
        <strand>+</strand>
        <context>TCATATATAA[C/T]TAACTTCTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGATTTTCAGTCTTCTTTTGGTTTTCTAGGCCACCATAATCATATATAA</left_flank>
        <right_flank>TAACTTCTTTTGCCTGGTTCCTTTTCTTGGTCGGTTTCCGATTTCAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTGCAACGACTAGCTCGCTTAGCTTTCCTTTTCTTTCGGTTGTAGGTGTGGCTGGGTATCGAGACTGGGTATAGAGTCTGAAAAAAACCAAGTGTTTTCAGTGAGAGAAGGTAAAAAATCACTGAAAAATAAAAGAAGTCTATTAAGAACAGTATAAACCGAAAAAAAAATGTTGAAAAAGTAATGAAAACCCTGATTAAAGTATGTTTTCATTCAAAAAAGAATTAATTTTAAAAAAATTCACCTTAAATCGACCCCGTAAATCGACACCGATTGCGGGTCTCGCCGCGCTTGGGTTACTGTTGCACCCGTTTCAACTATACAAAGTAGAGATTTCCTCTTCACTTTGAACGCAGCATGATTATTTCGAGAAAAAATTTTCCGAAAAAAATCGGAAAAATCGAGAACTCGATTTTCCGATTCCGACCAAGCCTGGTACCTGACATCCTAGATTTTCAGTCTTCTTTTGGTTTTCTAGGCCACCATAATCATATATAATTAACTTCTTTTGCCTGGTTCCTTTTCTTGGTCGGTTTCCGATTTCAAAAAATTTTCAGAATGACTGAAAATATTGTTTCATTTCCTATTATCATTTCCTTTATGGCTTTATCAATTATCGGTTTGATTGGAAATCTAACTATTCTTTTGGTGACATTTAAAATTAAAACTTTGCAAACGAGATGTTGTATTCTGATTGGGATAATGGCCTTTTTCAATTTTGTAGTTTGTGTCTATGTGGTACGTTTCCTAGGAGAAGCGAAGTTAGCTTCCATCTCCGTTGGTCTAAAATCGTCGACCGCCGACCGACAGCTGGCTGGGTCGGTGGTCGGTCGGTCGGATAAGTTTCCCGACCGAATGGAAGCTTTAGAGCCAATCCGAACTTCGTAATCTATTTCAGACTCAATTAAGAATAATGATGTTGCTTGGATTCTACGATATCTTCAATACCACTTGTTTTCTATTCTCCTTCTATGGAATTTTCGCAATGAATATGCAGAG</canonical>
            <polymorphic>ACTGCAACGACTAGCTCGCTTAGCTTTCCTTTTCTTTCGGTTGTAGGTGTGGCTGGGTATCGAGACTGGGTATAGAGTCTGAAAAAAACCAAGTGTTTTCAGTGAGAGAAGGTAAAAAATCACTGAAAAATAAAAGAAGTCTATTAAGAACAGTATAAACCGAAAAAAAAATGTTGAAAAAGTAATGAAAACCCTGATTAAAGTATGTTTTCATTCAAAAAAGAATTAATTTTAAAAAAATTCACCTTAAATCGACCCCGTAAATCGACACCGATTGCGGGTCTCGCCGCGCTTGGGTTACTGTTGCACCCGTTTCAACTATACAAAGTAGAGATTTCCTCTTCACTTTGAACGCAGCATGATTATTTCGAGAAAAAATTTTCCGAAAAAAATCGGAAAAATCGAGAACTCGATTTTCCGATTCCGACCAAGCCTGGTACCTGACATCCTAGATTTTCAGTCTTCTTTTGGTTTTCTAGGCCACCATAATCATATATAAYTAACTTCTTTTGCCTGGTTCCTTTTCTTGGTCGGTTTCCGATTTCAAAAAATTTTCAGAATGACTGAAAATATTGTTTCATTTCCTATTATCATTTCCTTTATGGCTTTATCAATTATCGGTTTGATTGGAAATCTAACTATTCTTTTGGTGACATTTAAAATTAAAACTTTGCAAACGAGATGTTGTATTCTGATTGGGATAATGGCCTTTTTCAATTTTGTAGTTTGTGTCTATGTGGTACGTTTCCTAGGAGAAGCGAAGTTAGCTTCCATCTCCGTTGGTCTAAAATCGTCGACCGCCGACCGACAGCTGGCTGGGTCGGTGGTCGGTCGGTCGGATAAGTTTCCCGACCGAATGGAAGCTTTAGAGCCAATCCGAACTTCGTAATCTATTTCAGACTCAATTAAGAATAATGATGTTGCTTGGATTCTACGATATCTTCAATACCACTTGTTTTCTATTCTCCTTCTATGGAATTTTCGCAATGAATATGCAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>253 243 157 144 94 54 28 15 6 6</canonical_bands>
                <polymorphic_bands>410 243 144 94 54 28 15 6 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>223 188 138 121 73 63 55 52 48 24 11 4</canonical_bands>
                <polymorphic_bands>223 188 173 138 73 63 55 48 24 11 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTAGATTTTCAGTCTTCTTTTG</pcr_primer_p1>
		<pcr_primer_p2>ATCAGAATACAACATCTCGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCTAGATTTTCAGTCTTCTTTTGGTTTTCTAGGCCACCATAATCATATATAATTAACTTCTTTTGCCTGGTTCCTTTTCTTGGTCGGTTTCCGATTTCAAAAAATTTTCAGAATGACTGAAAATATTGTTTCATTTCCTATTATCATTTCCTTTATGGCTTTATCAATTATCGGTTTGATTGGAAATCTAACTATTCTTTTGGTGACATTTAAAATTAAAACTTTGCAAACGAGATGTTGTATTCTGAT</canonical_amplicon>
		<polymorphic_amplicon>CCTAGATTTTCAGTCTTCTTTTGGTTTTCTAGGCCACCATAATCATATATAAYTAACTTCTTTTGCCTGGTTCCTTTTCTTGGTCGGTTTCCGATTTCAAAAAATTTTCAGAATGACTGAAAATATTGTTTCATTTCCTATTATCATTTCCTTTATGGCTTTATCAATTATCGGTTTGATTGGAAATCTAACTATTCTTTTGGTGACATTTAAAATTAAAACTTTGCAAACGAGATGTTGTATTCTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8646</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>46888</contig_pos>
        <strand>+</strand>
        <context>TATGGGCTGG[A/G]TGCTCGGACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAACTTCTTCCACCGCTAGCCGCTCACCGAGTGACTTCGTATGGGCTGG</left_flank>
        <right_flank>TGCTCGGACAACGTCAAGTTTGGCAACGCGTTCGGCCGCAAATTCGTCGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCAAGTACTTGGTAAGGATCACAAGCTAGTTTTCATTTTCAAACAATTCAATTTCTAGATCTCCGGACTTCGAAGCGCACTGCACACCTGCGAGTACACGTTCCAGCGAGAAGCATGGAACTGCACACTCACACTCCCAGGTGTCGGAACATCACCTCTACAGAGTAAGCAAAATCAGCACCTGTCCCGTTCCAATTTTCAAATTACACCCTTCTTTTCAGTTGCCTCCCGTGAATCAGCATATGTGTACGCGATTTCCGCAGCCGGCGTGTCTCACTCACTGGCTCGCGCTTGTTCGAAGGTAAGTATTATATGAGTCAGCAGCATGTCGGCAAAATGACCTTGATTGCTTTCCTTGAATGTTATATTTTCTATTTTCCTAACTTCTCGCTTTTCCAGGGCCTAATCGACGATTGCGGTTGTGGAGAGACGCCACAGGGAACCGACCCAACTTCTTCCACCGCTAGCCGCTCACCGAGTGACTTCGTATGGGCTGGATGCTCGGACAACGTCAAGTTTGGCAACGCGTTCGGCCGCAAATTCGTCGACCAATACGACCGTCAACACGCCACCGAGCCACGTTCCCAGATGAATTTGCACAACAATCGCGTCGGCCGACGTCTTCTCGCCAACGCGATGAATAGAGAATGCAAATGCCACGGAGTGTCGGGAAGCTGTGTCACCAAGACTTGCTGGAAGGTGATGCCAAAGTTCGATGAGTTTGCCGCACGTCTTCATGAGAAGTATCAACTCGCGAAACTTGTGACTAACAACGATCAGAAGCTGTTTGTAAGAAGCACACCGTCTGCAGGGCTCTCCGGAAGAACAGAAAGATACGTCAAAACTTTGGACGCTTCTTCAAAGGTAGGTTATTGCTTAGTTTTGCTCGGTTTTTGCTTGTTCAGTTTAGGCGGCATCGCGCTTGGCGCCGAGCTAATTTTGAACGCGTCGCGTGTCGGCGTCGCGTGCCAGCATGGCTGTCGCAAGCGCCTTTTTTG</canonical>
            <polymorphic>TATCAAGTACTTGGTAAGGATCACAAGCTAGTTTTCATTTTCAAACAATTCAATTTCTAGATCTCCGGACTTCGAAGCGCACTGCACACCTGCGAGTACACGTTCCAGCGAGAAGCATGGAACTGCACACTCACACTCCCAGGTGTCGGAACATCACCTCTACAGAGTAAGCAAAATCAGCACCTGTCCCGTTCCAATTTTCAAATTACACCCTTCTTTTCAGTTGCCTCCCGTGAATCAGCATATGTGTACGCGATTTCCGCAGCCGGCGTGTCTCACTCACTGGCTCGCGCTTGTTCGAAGGTAAGTATTATATGAGTCAGCAGCATGTCGGCAAAATGACCTTGATTGCTTTCCTTGAATGTTATATTTTCTATTTTCCTAACTTCTCGCTTTTCCAGGGCCTAATCGACGATTGCGGTTGTGGAGAGACGCCACAGGGAACCGACCCAACTTCTTCCACCGCTAGCCGCTCACCGAGTGACTTCGTATGGGCTGGRTGCTCGGACAACGTCAAGTTTGGCAACGCGTTCGGCCGCAAATTCGTCGACCAATACGACCGTCAACACGCCACCGAGCCACGTTCCCAGATGAATTTGCACAACAATCGCGTCGGCCGACGTCTTCTCGCCAACGCGATGAATAGAGAATGCAAATGCCACGGAGTGTCGGGAAGCTGTGTCACCAAGACTTGCTGGAAGGTGATGCCAAAGTTCGATGAGTTTGCCGCACGTCTTCATGAGAAGTATCAACTCGCGAAACTTGTGACTAACAACGATCAGAAGCTGTTTGTAAGAAGCACACCGTCTGCAGGGCTCTCCGGAAGAACAGAAAGATACGTCAAAACTTTGGACGCTTCTTCAAAGGTAGGTTATTGCTTAGTTTTGCTCGGTTTTTGCTTGTTCAGTTTAGGCGGCATCGCGCTTGGCGCCGAGCTAATTTTGAACGCGTCGCGTGTCGGCGTCGCGTGCCAGCATGGCTGTCGCAAGCGCCTTTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTGCTTTCCTTGAATGTTAT</pcr_primer_p1>
		<pcr_primer_p2>GATTGTTGTGCAAATTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>GATTGCTTTCCTTGAATGTTATATTTTCTATTTTCCTAACTTCTCGCTTTTCCAGGGCCTAATCGACGATTGCGGTTGTGGAGAGACGCCACAGGGAACCGACCCAACTTCTTCCACCGCTAGCCGCTCACCGAGTGACTTCGTATGGGCTGGATGCTCGGACAACGTCAAGTTTGGCAACGCGTTCGGCCGCAAATTCGTCGACCAATACGACCGTCAACACGCCACCGAGCCACGTTCCCAGATGAATTTGCACAACAATC</canonical_amplicon>
		<polymorphic_amplicon>GATTGCTTTCCTTGAATGTTATATTTTCTATTTTCCTAACTTCTCGCTTTTCCAGGGCCTAATCGACGATTGCGGTTGTGGAGAGACGCCACAGGGAACCGACCCAACTTCTTCCACCGCTAGCCGCTCACCGAGTGACTTCGTATGGGCTGGRTGCTCGGACAACGTCAAGTTTGGCAACGCGTTCGGCCGCAAATTCGTCGACCAATACGACCGTCAACACGCCACCGAGCCACGTTCCCAGATGAATTTGCACAACAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8647</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>46833</contig_pos>
        <strand>+</strand>
        <context>CCACAGGGAA[A/C]CGACCCAACT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCCAGGGCCTAATCGACGATTGCGGTTGTGGAGAGACGCCACAGGGAA</left_flank>
        <right_flank>CGACCCAACTTCTTCCACCGCTAGCCGCTCACCGAGTGACTTCGTATGGG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTTCCCGGATTGACGCCACAGCAGAAGCGAATGTGCCATGAGAATCCGAACATTATCAAGTACTTGGTAAGGATCACAAGCTAGTTTTCATTTTCAAACAATTCAATTTCTAGATCTCCGGACTTCGAAGCGCACTGCACACCTGCGAGTACACGTTCCAGCGAGAAGCATGGAACTGCACACTCACACTCCCAGGTGTCGGAACATCACCTCTACAGAGTAAGCAAAATCAGCACCTGTCCCGTTCCAATTTTCAAATTACACCCTTCTTTTCAGTTGCCTCCCGTGAATCAGCATATGTGTACGCGATTTCCGCAGCCGGCGTGTCTCACTCACTGGCTCGCGCTTGTTCGAAGGTAAGTATTATATGAGTCAGCAGCATGTCGGCAAAATGACCTTGATTGCTTTCCTTGAATGTTATATTTTCTATTTTCCTAACTTCTCGCTTTTCCAGGGCCTAATCGACGATTGCGGTTGTGGAGAGACGCCACAGGGAACCGACCCAACTTCTTCCACCGCTAGCCGCTCACCGAGTGACTTCGTATGGGCTGGATGCTCGGACAACGTCAAGTTTGGCAACGCGTTCGGCCGCAAATTCGTCGACCAATACGACCGTCAACACGCCACCGAGCCACGTTCCCAGATGAATTTGCACAACAATCGCGTCGGCCGACGTCTTCTCGCCAACGCGATGAATAGAGAATGCAAATGCCACGGAGTGTCGGGAAGCTGTGTCACCAAGACTTGCTGGAAGGTGATGCCAAAGTTCGATGAGTTTGCCGCACGTCTTCATGAGAAGTATCAACTCGCGAAACTTGTGACTAACAACGATCAGAAGCTGTTTGTAAGAAGCACACCGTCTGCAGGGCTCTCCGGAAGAACAGAAAGATACGTCAAAACTTTGGACGCTTCTTCAAAGGTAGGTTATTGCTTAGTTTTGCTCGGTTTTTGCTTGTTCAGTTTAGGCGGCATCGCGCTTGGCGCCGAGCTAATTTTGA</canonical>
            <polymorphic>ATGTTCCCGGATTGACGCCACAGCAGAAGCGAATGTGCCATGAGAATCCGAACATTATCAAGTACTTGGTAAGGATCACAAGCTAGTTTTCATTTTCAAACAATTCAATTTCTAGATCTCCGGACTTCGAAGCGCACTGCACACCTGCGAGTACACGTTCCAGCGAGAAGCATGGAACTGCACACTCACACTCCCAGGTGTCGGAACATCACCTCTACAGAGTAAGCAAAATCAGCACCTGTCCCGTTCCAATTTTCAAATTACACCCTTCTTTTCAGTTGCCTCCCGTGAATCAGCATATGTGTACGCGATTTCCGCAGCCGGCGTGTCTCACTCACTGGCTCGCGCTTGTTCGAAGGTAAGTATTATATGAGTCAGCAGCATGTCGGCAAAATGACCTTGATTGCTTTCCTTGAATGTTATATTTTCTATTTTCCTAACTTCTCGCTTTTCCAGGGCCTAATCGACGATTGCGGTTGTGGAGAGACGCCACAGGGAAMCGACCCAACTTCTTCCACCGCTAGCCGCTCACCGAGTGACTTCGTATGGGCTGGATGCTCGGACAACGTCAAGTTTGGCAACGCGTTCGGCCGCAAATTCGTCGACCAATACGACCGTCAACACGCCACCGAGCCACGTTCCCAGATGAATTTGCACAACAATCGCGTCGGCCGACGTCTTCTCGCCAACGCGATGAATAGAGAATGCAAATGCCACGGAGTGTCGGGAAGCTGTGTCACCAAGACTTGCTGGAAGGTGATGCCAAAGTTCGATGAGTTTGCCGCACGTCTTCATGAGAAGTATCAACTCGCGAAACTTGTGACTAACAACGATCAGAAGCTGTTTGTAAGAAGCACACCGTCTGCAGGGCTCTCCGGAAGAACAGAAAGATACGTCAAAACTTTGGACGCTTCTTCAAAGGTAGGTTATTGCTTAGTTTTGCTCGGTTTTTGCTTGTTCAGTTTAGGCGGCATCGCGCTTGGCGCCGAGCTAATTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>498 486 16</canonical_bands>
                <polymorphic_bands>984 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTGCTTTCCTTGAATGTTAT</pcr_primer_p1>
		<pcr_primer_p2>GATTGTTGTGCAAATTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>GATTGCTTTCCTTGAATGTTATATTTTCTATTTTCCTAACTTCTCGCTTTTCCAGGGCCTAATCGACGATTGCGGTTGTGGAGAGACGCCACAGGGAACCGACCCAACTTCTTCCACCGCTAGCCGCTCACCGAGTGACTTCGTATGGGCTGGATGCTCGGACAACGTCAAGTTTGGCAACGCGTTCGGCCGCAAATTCGTCGACCAATACGACCGTCAACACGCCACCGAGCCACGTTCCCAGATGAATTTGCACAACAATC</canonical_amplicon>
		<polymorphic_amplicon>GATTGCTTTCCTTGAATGTTATATTTTCTATTTTCCTAACTTCTCGCTTTTCCAGGGCCTAATCGACGATTGCGGTTGTGGAGAGACGCCACAGGGAAMCGACCCAACTTCTTCCACCGCTAGCCGCTCACCGAGTGACTTCGTATGGGCTGGATGCTCGGACAACGTCAAGTTTGGCAACGCGTTCGGCCGCAAATTCGTCGACCAATACGACCGTCAACACGCCACCGAGCCACGTTCCCAGATGAATTTGCACAACAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8648</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>46782</contig_pos>
        <strand>+</strand>
        <context>AACKTCTCGC[G/T]TTTCCAGGGC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTGATTGCTTTCCTTGAATGTTATATTTTCTATTTTCCTAACTTCTCGC</left_flank>
        <right_flank>TTTCCAGGGCCTAATCGACGATTGCGGTTGTGGAGAGACGCCACAGGGAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCGGACACGTCGTCACCCACAACGTCCAACTCGCCGATTCTCTGCAAAAATGTTCCCGGATTGACGCCACAGCAGAAGCGAATGTGCCATGAGAATCCGAACATTATCAAGTACTTGGTAAGGATCACAAGCTAGTTTTCATTTTCAAACAATTCAATTTCTAGATCTCCGGACTTCGAAGCGCACTGCACACCTGCGAGTACACGTTCCAGCGAGAAGCATGGAACTGCACACTCACACTCCCAGGTGTCGGAACATCACCTCTACAGAGTAAGCAAAATCAGCACCTGTCCCGTTCCAATTTTCAAATTACACCCTTCTTTTCAGTTGCCTCCCGTGAATCAGCATATGTGTACGCGATTTCCGCAGCCGGCGTGTCTCACTCACTGGCTCGCGCTTGTTCGAAGGTAAGTATTATATGAGTCAGCAGCATGTCGGCAAAATGACCTTGATTGCTTTCCTTGAATGTTATATTTTCTATTTTCCTAACTTCTCGCTTTTCCAGGGCCTAATCGACGATTGCGGTTGTGGAGAGACGCCACAGGGAACCGACCCAACTTCTTCCACCGCTAGCCGCTCACCGAGTGACTTCGTATGGGCTGGATGCTCGGACAACGTCAAGTTTGGCAACGCGTTCGGCCGCAAATTCGTCGACCAATACGACCGTCAACACGCCACCGAGCCACGTTCCCAGATGAATTTGCACAACAATCGCGTCGGCCGACGTCTTCTCGCCAACGCGATGAATAGAGAATGCAAATGCCACGGAGTGTCGGGAAGCTGTGTCACCAAGACTTGCTGGAAGGTGATGCCAAAGTTCGATGAGTTTGCCGCACGTCTTCATGAGAAGTATCAACTCGCGAAACTTGTGACTAACAACGATCAGAAGCTGTTTGTAAGAAGCACACCGTCTGCAGGGCTCTCCGGAAGAACAGAAAGATACGTCAAAACTTTGGACGCTTCTTCAAAGGTAGGTTATTGCTTAGTTTTGCTCGGTT</canonical>
            <polymorphic>AAGCGGACACGTCGTCACCCACAACGTCCAACTCGCCGATTCTCTGCAAAAATGTTCCCGGATTGACGCCACAGCAGAAGCGAATGTGCCATGAGAATCCGAACATTATCAAGTACTTGGTAAGGATCACAAGCTAGTTTTCATTTTCAAACAATTCAATTTCTAGATCTCCGGACTTCGAAGCGCACTGCACACCTGCGAGTACACGTTCCAGCGAGAAGCATGGAACTGCACACTCACACTCCCAGGTGTCGGAACATCACCTCTACAGAGTAAGCAAAATCAGCACCTGTCCCGTTCCAATTTTCAAATTACACCCTTCTTTTCAGTTGCCTCCCGTGAATCAGCATATGTGTACGCGATTTCCGCAGCCGGCGTGTCTCACTCACTGGCTCGCGCTTGTTCGAAGGTAAGTATTATATGAGTCAGCAGCATGTCGGCAAAATGACCTTGATTGCTTTCCTTGAATGTTATATTTTCTATTTTCCTAACTTCTCGCKTTTCCAGGGCCTAATCGACGATTGCGGTTGTGGAGAGACGCCACAGGGAACCGACCCAACTTCTTCCACCGCTAGCCGCTCACCGAGTGACTTCGTATGGGCTGGATGCTCGGACAACGTCAAGTTTGGCAACGCGTTCGGCCGCAAATTCGTCGACCAATACGACCGTCAACACGCCACCGAGCCACGTTCCCAGATGAATTTGCACAACAATCGCGTCGGCCGACGTCTTCTCGCCAACGCGATGAATAGAGAATGCAAATGCCACGGAGTGTCGGGAAGCTGTGTCACCAAGACTTGCTGGAAGGTGATGCCAAAGTTCGATGAGTTTGCCGCACGTCTTCATGAGAAGTATCAACTCGCGAAACTTGTGACTAACAACGATCAGAAGCTGTTTGTAAGAAGCACACCGTCTGCAGGGCTCTCCGGAAGAACAGAAAGATACGTCAAAACTTTGGACGCTTCTTCAAAGGTAGGTTATTGCTTAGTTTTGCTCGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGATTGCTTTCCTTGAAT</pcr_primer_p1>
		<pcr_primer_p2>GATTGTTGTGCAAATTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>266</pcr_amplicon_size>
		<canonical_amplicon>CTTGATTGCTTTCCTTGAATGTTATATTTTCTATTTTCCTAACTTCTCGCTTTTCCAGGGCCTAATCGACGATTGCGGTTGTGGAGAGACGCCACAGGGAACCGACCCAACTTCTTCCACCGCTAGCCGCTCACCGAGTGACTTCGTATGGGCTGGATGCTCGGACAACGTCAAGTTTGGCAACGCGTTCGGCCGCAAATTCGTCGACCAATACGACCGTCAACACGCCACCGAGCCACGTTCCCAGATGAATTTGCACAACAATC</canonical_amplicon>
		<polymorphic_amplicon>CTTGATTGCTTTCCTTGAATGTTATATTTTCTATTTTCCTAACTTCTCGCKTTTCCAGGGCCTAATCGACGATTGCGGTTGTGGAGAGACGCCACAGGGAACCGACCCAACTTCTTCCACCGCTAGCCGCTCACCGAGTGACTTCGTATGGGCTGGATGCTCGGACAACGTCAAGTTTGGCAACGCGTTCGGCCGCAAATTCGTCGACCAATACGACCGTCAACACGCCACCGAGCCACGTTCCCAGATGAATTTGCACAACAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8649</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>46775</contig_pos>
        <strand>+</strand>
        <context>TTTTCCYAAC[G/T]TCTCGCKTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATGACCTTGATTGCTTTCCTTGAATGTTATATTTTCTATTTTCCTAAC</left_flank>
        <right_flank>TCTCGCTTTTCCAGGGCCTAATCGACGATTGCGGTTGTGGAGAGACGCCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTCGAAAGCGGACACGTCGTCACCCACAACGTCCAACTCGCCGATTCTCTGCAAAAATGTTCCCGGATTGACGCCACAGCAGAAGCGAATGTGCCATGAGAATCCGAACATTATCAAGTACTTGGTAAGGATCACAAGCTAGTTTTCATTTTCAAACAATTCAATTTCTAGATCTCCGGACTTCGAAGCGCACTGCACACCTGCGAGTACACGTTCCAGCGAGAAGCATGGAACTGCACACTCACACTCCCAGGTGTCGGAACATCACCTCTACAGAGTAAGCAAAATCAGCACCTGTCCCGTTCCAATTTTCAAATTACACCCTTCTTTTCAGTTGCCTCCCGTGAATCAGCATATGTGTACGCGATTTCCGCAGCCGGCGTGTCTCACTCACTGGCTCGCGCTTGTTCGAAGGTAAGTATTATATGAGTCAGCAGCATGTCGGCAAAATGACCTTGATTGCTTTCCTTGAATGTTATATTTTCTATTTTCCTAACTTCTCGCTTTTCCAGGGCCTAATCGACGATTGCGGTTGTGGAGAGACGCCACAGGGAACCGACCCAACTTCTTCCACCGCTAGCCGCTCACCGAGTGACTTCGTATGGGCTGGATGCTCGGACAACGTCAAGTTTGGCAACGCGTTCGGCCGCAAATTCGTCGACCAATACGACCGTCAACACGCCACCGAGCCACGTTCCCAGATGAATTTGCACAACAATCGCGTCGGCCGACGTCTTCTCGCCAACGCGATGAATAGAGAATGCAAATGCCACGGAGTGTCGGGAAGCTGTGTCACCAAGACTTGCTGGAAGGTGATGCCAAAGTTCGATGAGTTTGCCGCACGTCTTCATGAGAAGTATCAACTCGCGAAACTTGTGACTAACAACGATCAGAAGCTGTTTGTAAGAAGCACACCGTCTGCAGGGCTCTCCGGAAGAACAGAAAGATACGTCAAAACTTTGGACGCTTCTTCAAAGGTAGGTTATTGCTTAGTTTTG</canonical>
            <polymorphic>CTTTCGAAAGCGGACACGTCGTCACCCACAACGTCCAACTCGCCGATTCTCTGCAAAAATGTTCCCGGATTGACGCCACAGCAGAAGCGAATGTGCCATGAGAATCCGAACATTATCAAGTACTTGGTAAGGATCACAAGCTAGTTTTCATTTTCAAACAATTCAATTTCTAGATCTCCGGACTTCGAAGCGCACTGCACACCTGCGAGTACACGTTCCAGCGAGAAGCATGGAACTGCACACTCACACTCCCAGGTGTCGGAACATCACCTCTACAGAGTAAGCAAAATCAGCACCTGTCCCGTTCCAATTTTCAAATTACACCCTTCTTTTCAGTTGCCTCCCGTGAATCAGCATATGTGTACGCGATTTCCGCAGCCGGCGTGTCTCACTCACTGGCTCGCGCTTGTTCGAAGGTAAGTATTATATGAGTCAGCAGCATGTCGGCAAAATGACCTTGATTGCTTTCCTTGAATGTTATATTTTCTATTTTCCTAACKTCTCGCTTTTCCAGGGCCTAATCGACGATTGCGGTTGTGGAGAGACGCCACAGGGAACCGACCCAACTTCTTCCACCGCTAGCCGCTCACCGAGTGACTTCGTATGGGCTGGATGCTCGGACAACGTCAAGTTTGGCAACGCGTTCGGCCGCAAATTCGTCGACCAATACGACCGTCAACACGCCACCGAGCCACGTTCCCAGATGAATTTGCACAACAATCGCGTCGGCCGACGTCTTCTCGCCAACGCGATGAATAGAGAATGCAAATGCCACGGAGTGTCGGGAAGCTGTGTCACCAAGACTTGCTGGAAGGTGATGCCAAAGTTCGATGAGTTTGCCGCACGTCTTCATGAGAAGTATCAACTCGCGAAACTTGTGACTAACAACGATCAGAAGCTGTTTGTAAGAAGCACACCGTCTGCAGGGCTCTCCGGAAGAACAGAAAGATACGTCAAAACTTTGGACGCTTCTTCAAAGGTAGGTTATTGCTTAGTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATATGAGTCAGCAGCATGTC</pcr_primer_p1>
		<pcr_primer_p2>GATTGTTGTGCAAATTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>299</pcr_amplicon_size>
		<canonical_amplicon>TTATATGAGTCAGCAGCATGTCGGCAAAATGACCTTGATTGCTTTCCTTGAATGTTATATTTTCTATTTTCCTAACTTCTCGCTTTTCCAGGGCCTAATCGACGATTGCGGTTGTGGAGAGACGCCACAGGGAACCGACCCAACTTCTTCCACCGCTAGCCGCTCACCGAGTGACTTCGTATGGGCTGGATGCTCGGACAACGTCAAGTTTGGCAACGCGTTCGGCCGCAAATTCGTCGACCAATACGACCGTCAACACGCCACCGAGCCACGTTCCCAGATGAATTTGCACAACAATC</canonical_amplicon>
		<polymorphic_amplicon>TTATATGAGTCAGCAGCATGTCGGCAAAATGACCTTGATTGCTTTCCTTGAATGTTATATTTTCTATTTTCCTAACKTCTCGCTTTTCCAGGGCCTAATCGACGATTGCGGTTGTGGAGAGACGCCACAGGGAACCGACCCAACTTCTTCCACCGCTAGCCGCTCACCGAGTGACTTCGTATGGGCTGGATGCTCGGACAACGTCAAGTTTGGCAACGCGTTCGGCCGCAAATTCGTCGACCAATACGACCGTCAACACGCCACCGAGCCACGTTCCCAGATGAATTTGCACAACAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8650</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>46771</contig_pos>
        <strand>+</strand>
        <context>TCTATTTTCC[C/T]AACKTCTCGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCAAAATGACCTTGATTGCTTTCCTTGAATGTTATATTTTCTATTTTCC</left_flank>
        <right_flank>AACTTCTCGCTTTTCCAGGGCCTAATCGACGATTGCGGTTGTGGAGAGAC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGCTTTCGAAAGCGGACACGTCGTCACCCACAACGTCCAACTCGCCGATTCTCTGCAAAAATGTTCCCGGATTGACGCCACAGCAGAAGCGAATGTGCCATGAGAATCCGAACATTATCAAGTACTTGGTAAGGATCACAAGCTAGTTTTCATTTTCAAACAATTCAATTTCTAGATCTCCGGACTTCGAAGCGCACTGCACACCTGCGAGTACACGTTCCAGCGAGAAGCATGGAACTGCACACTCACACTCCCAGGTGTCGGAACATCACCTCTACAGAGTAAGCAAAATCAGCACCTGTCCCGTTCCAATTTTCAAATTACACCCTTCTTTTCAGTTGCCTCCCGTGAATCAGCATATGTGTACGCGATTTCCGCAGCCGGCGTGTCTCACTCACTGGCTCGCGCTTGTTCGAAGGTAAGTATTATATGAGTCAGCAGCATGTCGGCAAAATGACCTTGATTGCTTTCCTTGAATGTTATATTTTCTATTTTCCTAACTTCTCGCTTTTCCAGGGCCTAATCGACGATTGCGGTTGTGGAGAGACGCCACAGGGAACCGACCCAACTTCTTCCACCGCTAGCCGCTCACCGAGTGACTTCGTATGGGCTGGATGCTCGGACAACGTCAAGTTTGGCAACGCGTTCGGCCGCAAATTCGTCGACCAATACGACCGTCAACACGCCACCGAGCCACGTTCCCAGATGAATTTGCACAACAATCGCGTCGGCCGACGTCTTCTCGCCAACGCGATGAATAGAGAATGCAAATGCCACGGAGTGTCGGGAAGCTGTGTCACCAAGACTTGCTGGAAGGTGATGCCAAAGTTCGATGAGTTTGCCGCACGTCTTCATGAGAAGTATCAACTCGCGAAACTTGTGACTAACAACGATCAGAAGCTGTTTGTAAGAAGCACACCGTCTGCAGGGCTCTCCGGAAGAACAGAAAGATACGTCAAAACTTTGGACGCTTCTTCAAAGGTAGGTTATTGCTTAGT</canonical>
            <polymorphic>GTTGCTTTCGAAAGCGGACACGTCGTCACCCACAACGTCCAACTCGCCGATTCTCTGCAAAAATGTTCCCGGATTGACGCCACAGCAGAAGCGAATGTGCCATGAGAATCCGAACATTATCAAGTACTTGGTAAGGATCACAAGCTAGTTTTCATTTTCAAACAATTCAATTTCTAGATCTCCGGACTTCGAAGCGCACTGCACACCTGCGAGTACACGTTCCAGCGAGAAGCATGGAACTGCACACTCACACTCCCAGGTGTCGGAACATCACCTCTACAGAGTAAGCAAAATCAGCACCTGTCCCGTTCCAATTTTCAAATTACACCCTTCTTTTCAGTTGCCTCCCGTGAATCAGCATATGTGTACGCGATTTCCGCAGCCGGCGTGTCTCACTCACTGGCTCGCGCTTGTTCGAAGGTAAGTATTATATGAGTCAGCAGCATGTCGGCAAAATGACCTTGATTGCTTTCCTTGAATGTTATATTTTCTATTTTCCYAACTTCTCGCTTTTCCAGGGCCTAATCGACGATTGCGGTTGTGGAGAGACGCCACAGGGAACCGACCCAACTTCTTCCACCGCTAGCCGCTCACCGAGTGACTTCGTATGGGCTGGATGCTCGGACAACGTCAAGTTTGGCAACGCGTTCGGCCGCAAATTCGTCGACCAATACGACCGTCAACACGCCACCGAGCCACGTTCCCAGATGAATTTGCACAACAATCGCGTCGGCCGACGTCTTCTCGCCAACGCGATGAATAGAGAATGCAAATGCCACGGAGTGTCGGGAAGCTGTGTCACCAAGACTTGCTGGAAGGTGATGCCAAAGTTCGATGAGTTTGCCGCACGTCTTCATGAGAAGTATCAACTCGCGAAACTTGTGACTAACAACGATCAGAAGCTGTTTGTAAGAAGCACACCGTCTGCAGGGCTCTCCGGAAGAACAGAAAGATACGTCAAAACTTTGGACGCTTCTTCAAAGGTAGGTTATTGCTTAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATATGAGTCAGCAGCATGTC</pcr_primer_p1>
		<pcr_primer_p2>GATTGTTGTGCAAATTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>299</pcr_amplicon_size>
		<canonical_amplicon>TTATATGAGTCAGCAGCATGTCGGCAAAATGACCTTGATTGCTTTCCTTGAATGTTATATTTTCTATTTTCCTAACTTCTCGCTTTTCCAGGGCCTAATCGACGATTGCGGTTGTGGAGAGACGCCACAGGGAACCGACCCAACTTCTTCCACCGCTAGCCGCTCACCGAGTGACTTCGTATGGGCTGGATGCTCGGACAACGTCAAGTTTGGCAACGCGTTCGGCCGCAAATTCGTCGACCAATACGACCGTCAACACGCCACCGAGCCACGTTCCCAGATGAATTTGCACAACAATC</canonical_amplicon>
		<polymorphic_amplicon>TTATATGAGTCAGCAGCATGTCGGCAAAATGACCTTGATTGCTTTCCTTGAATGTTATATTTTCTATTTTCCYAACTTCTCGCTTTTCCAGGGCCTAATCGACGATTGCGGTTGTGGAGAGACGCCACAGGGAACCGACCCAACTTCTTCCACCGCTAGCCGCTCACCGAGTGACTTCGTATGGGCTGGATGCTCGGACAACGTCAAGTTTGGCAACGCGTTCGGCCGCAAATTCGTCGACCAATACGACCGTCAACACGCCACCGAGCCACGTTCCCAGATGAATTTGCACAACAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8651</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>46757</contig_pos>
        <strand>+</strand>
        <context>TGAATGTTAT[A/G]TTTTCTATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCAGCAGCATGTCGGCAAAATGACCTTGATTGCTTTCCTTGAATGTTAT</left_flank>
        <right_flank>TTTTCTATTTTCCTAACTTCTCGCTTTTCCAGGGCCTAATCGACGATTGC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTACCTTTTCTAGGTTGCTTTCGAAAGCGGACACGTCGTCACCCACAACGTCCAACTCGCCGATTCTCTGCAAAAATGTTCCCGGATTGACGCCACAGCAGAAGCGAATGTGCCATGAGAATCCGAACATTATCAAGTACTTGGTAAGGATCACAAGCTAGTTTTCATTTTCAAACAATTCAATTTCTAGATCTCCGGACTTCGAAGCGCACTGCACACCTGCGAGTACACGTTCCAGCGAGAAGCATGGAACTGCACACTCACACTCCCAGGTGTCGGAACATCACCTCTACAGAGTAAGCAAAATCAGCACCTGTCCCGTTCCAATTTTCAAATTACACCCTTCTTTTCAGTTGCCTCCCGTGAATCAGCATATGTGTACGCGATTTCCGCAGCCGGCGTGTCTCACTCACTGGCTCGCGCTTGTTCGAAGGTAAGTATTATATGAGTCAGCAGCATGTCGGCAAAATGACCTTGATTGCTTTCCTTGAATGTTATATTTTCTATTTTCCTAACTTCTCGCTTTTCCAGGGCCTAATCGACGATTGCGGTTGTGGAGAGACGCCACAGGGAACCGACCCAACTTCTTCCACCGCTAGCCGCTCACCGAGTGACTTCGTATGGGCTGGATGCTCGGACAACGTCAAGTTTGGCAACGCGTTCGGCCGCAAATTCGTCGACCAATACGACCGTCAACACGCCACCGAGCCACGTTCCCAGATGAATTTGCACAACAATCGCGTCGGCCGACGTCTTCTCGCCAACGCGATGAATAGAGAATGCAAATGCCACGGAGTGTCGGGAAGCTGTGTCACCAAGACTTGCTGGAAGGTGATGCCAAAGTTCGATGAGTTTGCCGCACGTCTTCATGAGAAGTATCAACTCGCGAAACTTGTGACTAACAACGATCAGAAGCTGTTTGTAAGAAGCACACCGTCTGCAGGGCTCTCCGGAAGAACAGAAAGATACGTCAAAACTTTGGACGCTTCTTCAAAGGTA</canonical>
            <polymorphic>ATTACCTTTTCTAGGTTGCTTTCGAAAGCGGACACGTCGTCACCCACAACGTCCAACTCGCCGATTCTCTGCAAAAATGTTCCCGGATTGACGCCACAGCAGAAGCGAATGTGCCATGAGAATCCGAACATTATCAAGTACTTGGTAAGGATCACAAGCTAGTTTTCATTTTCAAACAATTCAATTTCTAGATCTCCGGACTTCGAAGCGCACTGCACACCTGCGAGTACACGTTCCAGCGAGAAGCATGGAACTGCACACTCACACTCCCAGGTGTCGGAACATCACCTCTACAGAGTAAGCAAAATCAGCACCTGTCCCGTTCCAATTTTCAAATTACACCCTTCTTTTCAGTTGCCTCCCGTGAATCAGCATATGTGTACGCGATTTCCGCAGCCGGCGTGTCTCACTCACTGGCTCGCGCTTGTTCGAAGGTAAGTATTATATGAGTCAGCAGCATGTCGGCAAAATGACCTTGATTGCTTTCCTTGAATGTTATRTTTTCTATTTTCCTAACTTCTCGCTTTTCCAGGGCCTAATCGACGATTGCGGTTGTGGAGAGACGCCACAGGGAACCGACCCAACTTCTTCCACCGCTAGCCGCTCACCGAGTGACTTCGTATGGGCTGGATGCTCGGACAACGTCAAGTTTGGCAACGCGTTCGGCCGCAAATTCGTCGACCAATACGACCGTCAACACGCCACCGAGCCACGTTCCCAGATGAATTTGCACAACAATCGCGTCGGCCGACGTCTTCTCGCCAACGCGATGAATAGAGAATGCAAATGCCACGGAGTGTCGGGAAGCTGTGTCACCAAGACTTGCTGGAAGGTGATGCCAAAGTTCGATGAGTTTGCCGCACGTCTTCATGAGAAGTATCAACTCGCGAAACTTGTGACTAACAACGATCAGAAGCTGTTTGTAAGAAGCACACCGTCTGCAGGGCTCTCCGGAAGAACAGAAAGATACGTCAAAACTTTGGACGCTTCTTCAAAGGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATATGAGTCAGCAGCATGTC</pcr_primer_p1>
		<pcr_primer_p2>GATTGTTGTGCAAATTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>299</pcr_amplicon_size>
		<canonical_amplicon>TTATATGAGTCAGCAGCATGTCGGCAAAATGACCTTGATTGCTTTCCTTGAATGTTATATTTTCTATTTTCCTAACTTCTCGCTTTTCCAGGGCCTAATCGACGATTGCGGTTGTGGAGAGACGCCACAGGGAACCGACCCAACTTCTTCCACCGCTAGCCGCTCACCGAGTGACTTCGTATGGGCTGGATGCTCGGACAACGTCAAGTTTGGCAACGCGTTCGGCCGCAAATTCGTCGACCAATACGACCGTCAACACGCCACCGAGCCACGTTCCCAGATGAATTTGCACAACAATC</canonical_amplicon>
		<polymorphic_amplicon>TTATATGAGTCAGCAGCATGTCGGCAAAATGACCTTGATTGCTTTCCTTGAATGTTATRTTTTCTATTTTCCTAACTTCTCGCTTTTCCAGGGCCTAATCGACGATTGCGGTTGTGGAGAGACGCCACAGGGAACCGACCCAACTTCTTCCACCGCTAGCCGCTCACCGAGTGACTTCGTATGGGCTGGATGCTCGGACAACGTCAAGTTTGGCAACGCGTTCGGCCGCAAATTCGTCGACCAATACGACCGTCAACACGCCACCGAGCCACGTTCCCAGATGAATTTGCACAACAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8652</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>46728</contig_pos>
        <strand>+</strand>
        <context>GTCGGCAAAA[C/T]GACCTTGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCGCTTGTTCGAAGGTAAGTATTATATGAGTCAGCAGCATGTCGGCAAAA</left_flank>
        <right_flank>GACCTTGATTGCTTTCCTTGAATGTTATATTTTCTATTTTCCTAACTTCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAAATCGTAGACCTTGAACGAACCAAAATTACCTTTTCTAGGTTGCTTTCGAAAGCGGACACGTCGTCACCCACAACGTCCAACTCGCCGATTCTCTGCAAAAATGTTCCCGGATTGACGCCACAGCAGAAGCGAATGTGCCATGAGAATCCGAACATTATCAAGTACTTGGTAAGGATCACAAGCTAGTTTTCATTTTCAAACAATTCAATTTCTAGATCTCCGGACTTCGAAGCGCACTGCACACCTGCGAGTACACGTTCCAGCGAGAAGCATGGAACTGCACACTCACACTCCCAGGTGTCGGAACATCACCTCTACAGAGTAAGCAAAATCAGCACCTGTCCCGTTCCAATTTTCAAATTACACCCTTCTTTTCAGTTGCCTCCCGTGAATCAGCATATGTGTACGCGATTTCCGCAGCCGGCGTGTCTCACTCACTGGCTCGCGCTTGTTCGAAGGTAAGTATTATATGAGTCAGCAGCATGTCGGCAAAATGACCTTGATTGCTTTCCTTGAATGTTATATTTTCTATTTTCCTAACTTCTCGCTTTTCCAGGGCCTAATCGACGATTGCGGTTGTGGAGAGACGCCACAGGGAACCGACCCAACTTCTTCCACCGCTAGCCGCTCACCGAGTGACTTCGTATGGGCTGGATGCTCGGACAACGTCAAGTTTGGCAACGCGTTCGGCCGCAAATTCGTCGACCAATACGACCGTCAACACGCCACCGAGCCACGTTCCCAGATGAATTTGCACAACAATCGCGTCGGCCGACGTCTTCTCGCCAACGCGATGAATAGAGAATGCAAATGCCACGGAGTGTCGGGAAGCTGTGTCACCAAGACTTGCTGGAAGGTGATGCCAAAGTTCGATGAGTTTGCCGCACGTCTTCATGAGAAGTATCAACTCGCGAAACTTGTGACTAACAACGATCAGAAGCTGTTTGTAAGAAGCACACCGTCTGCAGGGCTCTCCGGAAGAACAGAAAGATACG</canonical>
            <polymorphic>TAAAAATCGTAGACCTTGAACGAACCAAAATTACCTTTTCTAGGTTGCTTTCGAAAGCGGACACGTCGTCACCCACAACGTCCAACTCGCCGATTCTCTGCAAAAATGTTCCCGGATTGACGCCACAGCAGAAGCGAATGTGCCATGAGAATCCGAACATTATCAAGTACTTGGTAAGGATCACAAGCTAGTTTTCATTTTCAAACAATTCAATTTCTAGATCTCCGGACTTCGAAGCGCACTGCACACCTGCGAGTACACGTTCCAGCGAGAAGCATGGAACTGCACACTCACACTCCCAGGTGTCGGAACATCACCTCTACAGAGTAAGCAAAATCAGCACCTGTCCCGTTCCAATTTTCAAATTACACCCTTCTTTTCAGTTGCCTCCCGTGAATCAGCATATGTGTACGCGATTTCCGCAGCCGGCGTGTCTCACTCACTGGCTCGCGCTTGTTCGAAGGTAAGTATTATATGAGTCAGCAGCATGTCGGCAAAAYGACCTTGATTGCTTTCCTTGAATGTTATATTTTCTATTTTCCTAACTTCTCGCTTTTCCAGGGCCTAATCGACGATTGCGGTTGTGGAGAGACGCCACAGGGAACCGACCCAACTTCTTCCACCGCTAGCCGCTCACCGAGTGACTTCGTATGGGCTGGATGCTCGGACAACGTCAAGTTTGGCAACGCGTTCGGCCGCAAATTCGTCGACCAATACGACCGTCAACACGCCACCGAGCCACGTTCCCAGATGAATTTGCACAACAATCGCGTCGGCCGACGTCTTCTCGCCAACGCGATGAATAGAGAATGCAAATGCCACGGAGTGTCGGGAAGCTGTGTCACCAAGACTTGCTGGAAGGTGATGCCAAAGTTCGATGAGTTTGCCGCACGTCTTCATGAGAAGTATCAACTCGCGAAACTTGTGACTAACAACGATCAGAAGCTGTTTGTAAGAAGCACACCGTCTGCAGGGCTCTCCGGAAGAACAGAAAGATACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCTTGTTCGAAGGTAAGTA</pcr_primer_p1>
		<pcr_primer_p2>GATTGTTGTGCAAATTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>319</pcr_amplicon_size>
		<canonical_amplicon>CGCTTGTTCGAAGGTAAGTATTATATGAGTCAGCAGCATGTCGGCAAAATGACCTTGATTGCTTTCCTTGAATGTTATATTTTCTATTTTCCTAACTTCTCGCTTTTCCAGGGCCTAATCGACGATTGCGGTTGTGGAGAGACGCCACAGGGAACCGACCCAACTTCTTCCACCGCTAGCCGCTCACCGAGTGACTTCGTATGGGCTGGATGCTCGGACAACGTCAAGTTTGGCAACGCGTTCGGCCGCAAATTCGTCGACCAATACGACCGTCAACACGCCACCGAGCCACGTTCCCAGATGAATTTGCACAACAATC</canonical_amplicon>
		<polymorphic_amplicon>CGCTTGTTCGAAGGTAAGTATTATATGAGTCAGCAGCATGTCGGCAAAAYGACCTTGATTGCTTTCCTTGAATGTTATATTTTCTATTTTCCTAACTTCTCGCTTTTCCAGGGCCTAATCGACGATTGCGGTTGTGGAGAGACGCCACAGGGAACCGACCCAACTTCTTCCACCGCTAGCCGCTCACCGAGTGACTTCGTATGGGCTGGATGCTCGGACAACGTCAAGTTTGGCAACGCGTTCGGCCGCAAATTCGTCGACCAATACGACCGTCAACACGCCACCGAGCCACGTTCCCAGATGAATTTGCACAACAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8653</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>51991</contig_pos>
        <strand>-</strand>
        <context>TGGTATTTTC[A/T]GCGGATTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAAAGGCAACAAGGCCGTATGTAGCATTTATCTGTTTTTTGGTATTTTC</left_flank>
        <right_flank>GCGGATTTGACTGGGCCAGGAGAACGGAGCTCAATAACTAAGAAAATGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAGTTTCATAATCTTAAACTGCCTATTCCTACTATTTGATATTACAGATATGTTGGCTCCACCCAACAAACGTATCCTCTTAGAGATCGTTCGTTTGTCGTAGGGTTGGCAACGGGGCTCCCGATTTTACGCGGGAGCCCCGAGCGCGCGGGGCGGAGATGCGCCCCCGTCCCGCCTGACGAAAAAAAAACTTTGTTAAAGAAATCAAAAAGAATCAGTAACCGAAATTAAAGAATCAGTAACCGAATTTTGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGGCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAANNNNNNNNNNGTCAGGTCCTTCTATTACAGGGTTTCACAGAACTTACACGAAATCTGATGGATTTATAAGACCAAGAGCAAAAAGGAAAACGTATGGAAGTTCTGCGAAGATGTAGCAGAAGAGAAAGGCAACAAGGCCGTATGTAGCATTTATCTGTTTTTTGGTATTTTCAGCGGATTTGACTGGGCCAGGAGAACGGAGCTCAATAACTAAGAAAATGGTGAGAACGATCATGATGAAAATTGGAATAATCTGAAAGTAAGGTTTATTTTTCATTCTATTAAAATGTTCGAAGAGTTATATTTTCTTAACAATTGCGAAAAAGTTCCGAAAAATCCGAAATGCCCGATAAACGCTGCTTAGAAAACCTTGCTGAAAAAAGGTTGTAGGGACAAACCGCTCTCAAAAACTTTGACCTGTGAGAGCACCACTTACCGATATCCAAGTACATCTGAAACATTTCCAGACAATATCGAGGTCCTACAATGATAATAGTTCTGATCATAACCACTTTATATTTTTCTTTTCAACATTTTCCATTTGACTATTCTAACGAGGCCAGCAATGCGAACACAATCCGTATCCAAAGAGATGATTTGCATAGCGCTTTGTGGAGTGTTGAGTGGAGTGATAAGAGTGATAAAGAGTGTTTTCGAAGTTCATGAACATTTT</canonical>
            <polymorphic>TAAGTTTCATAATCTTAAACTGCCTATTCCTACTATTTGATATTACAGATATGTTGGCTCCACCCAACAAACGTATCCTCTTAGAGATCGTTCGTTTGTCGTAGGGTTGGCAACGGGGCTCCCGATTTTACGCGGGAGCCCCGAGCGCGCGGGGCGGAGATGCGCCCCCGTCCCGCCTGACGAAAAAAAAACTTTGTTAAAGAAATCAAAAAGAATCAGTAACCGAAATTAAAGAATCAGTAACCGAATTTTGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGGCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAANNNNNNNNNNGTCAGGTCCTTCTATTACAGGGTTTCACAGAACTTACACGAAATCTGATGGATTTATAAGACCAAGAGCAAAAAGGAAAACGTATGGAAGTTCTGCGAAGATGTAGCAGAAGAGAAAGGCAACAAGGCCGTATGTAGCATTTATCTGTTTTTTGGTATTTTCWGCGGATTTGACTGGGCCAGGAGAACGGAGCTCAATAACTAAGAAAATGGTGAGAACGATCATGATGAAAATTGGAATAATCTGAAAGTAAGGTTTATTTTTCATTCTATTAAAATGTTCGAAGAGTTATATTTTCTTAACAATTGCGAAAAAGTTCCGAAAAATCCGAAATGCCCGATAAACGCTGCTTAGAAAACCTTGCTGAAAAAAGGTTGTAGGGACAAACCGCTCTCAAAAACTTTGACCTGTGAGAGCACCACTTACCGATATCCAAGTACATCTGAAACATTTCCAGACAATATCGAGGTCCTACAATGATAATAGTTCTGATCATAACCACTTTATATTTTTCTTTTCAACATTTTCCATTTGACTATTCTAACGAGGCCAGCAATGCGAACACAATCCGTATCCAAAGAGATGATTTGCATAGCGCTTTGTGGAGTGTTGAGTGGAGTGATAAGAGTGATAAAGAGTGTTTTCGAAGTTCATGAACATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCTATTACAGGGTTTCACAGA</pcr_primer_p1>
		<pcr_primer_p2>CTTTCAGATTATTCCAATTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CTTCTATTACAGGGTTTCACAGAACTTACACGAAATCTGATGGATTTATAAGACCAAGAGCAAAAAGGAAAACGTATGGAAGTTCTGCGAAGATGTAGCAGAAGAGAAAGGCAACAAGGCCGTATGTAGCATTTATCTGTTTTTTGGTATTTTCAGCGGATTTGACTGGGCCAGGAGAACGGAGCTCAATAACTAAGAAAATGGTGAGAACGATCATGATGAAAATTGGAATAATCTGAAAG</canonical_amplicon>
		<polymorphic_amplicon>CTTCTATTACAGGGTTTCACAGAACTTACACGAAATCTGATGGATTTATAAGACCAAGAGCAAAAAGGAAAACGTATGGAAGTTCTGCGAAGATGTAGCAGAAGAGAAAGGCAACAAGGCCGTATGTAGCATTTATCTGTTTTTTGGTATTTTCWGCGGATTTGACTGGGCCAGGAGAACGGAGCTCAATAACTAAGAAAATGGTGAGAACGATCATGATGAAAATTGGAATAATCTGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8654</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>52007</contig_pos>
        <strand>-</strand>
        <context>TTTGACTGGG[A/G]CAGGAGAACG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTATGTAGCATTTATCTGTTTTTTGGTATTTTCAGCGGATTTGACTGGG</left_flank>
        <right_flank>CAGGAGAACGGAGCTCAATAACTAAGAAAATGGTGAGAACGATCATGATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTGCCTATTCCTACTATTTGATATTACAGATATGTTGGCTCCACCCAACAAACGTATCCTCTTAGAGATCGTTCGTTTGTCGTAGGGTTGGCAACGGGGCTCCCGATTTTACGCGGGAGCCCCGAGCGCGCGGGGCGGAGATGCGCCCCCGTCCCGCCTGACGAAAAAAAAACTTTGTTAAAGAAATCAAAAAGAATCAGTAACCGAAATTAAAGAATCAGTAACCGAATTTTGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGGCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAANNNNNNNNNNGTCAGGTCCTTCTATTACAGGGTTTCACAGAACTTACACGAAATCTGATGGATTTATAAGACCAAGAGCAAAAAGGAAAACGTATGGAAGTTCTGCGAAGATGTAGCAGAAGAGAAAGGCAACAAGGCCGTATGTAGCATTTATCTGTTTTTTGGTATTTTCAGCGGATTTGACTGGGCCAGGAGAACGGAGCTCAATAACTAAGAAAATGGTGAGAACGATCATGATGAAAATTGGAATAATCTGAAAGTAAGGTTTATTTTTCATTCTATTAAAATGTTCGAAGAGTTATATTTTCTTAACAATTGCGAAAAAGTTCCGAAAAATCCGAAATGCCCGATAAACGCTGCTTAGAAAACCTTGCTGAAAAAAGGTTGTAGGGACAAACCGCTCTCAAAAACTTTGACCTGTGAGAGCACCACTTACCGATATCCAAGTACATCTGAAACATTTCCAGACAATATCGAGGTCCTACAATGATAATAGTTCTGATCATAACCACTTTATATTTTTCTTTTCAACATTTTCCATTTGACTATTCTAACGAGGCCAGCAATGCGAACACAATCCGTATCCAAAGAGATGATTTGCATAGCGCTTTGTGGAGTGTTGAGTGGAGTGATAAGAGTGATAAAGAGTGTTTTCGAAGTTCATGAACATTTTGGCACCTGTCATCATT</canonical>
            <polymorphic>AAACTGCCTATTCCTACTATTTGATATTACAGATATGTTGGCTCCACCCAACAAACGTATCCTCTTAGAGATCGTTCGTTTGTCGTAGGGTTGGCAACGGGGCTCCCGATTTTACGCGGGAGCCCCGAGCGCGCGGGGCGGAGATGCGCCCCCGTCCCGCCTGACGAAAAAAAAACTTTGTTAAAGAAATCAAAAAGAATCAGTAACCGAAATTAAAGAATCAGTAACCGAATTTTGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGGCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAANNNNNNNNNNGTCAGGTCCTTCTATTACAGGGTTTCACAGAACTTACACGAAATCTGATGGATTTATAAGACCAAGAGCAAAAAGGAAAACGTATGGAAGTTCTGCGAAGATGTAGCAGAAGAGAAAGGCAACAAGGCCGTATGTAGCATTTATCTGTTTTTTGGTATTTTCAGCGGATTTGACTGGGRCAGGAGAACGGAGCTCAATAACTAAGAAAATGGTGAGAACGATCATGATGAAAATTGGAATAATCTGAAAGTAAGGTTTATTTTTCATTCTATTAAAATGTTCGAAGAGTTATATTTTCTTAACAATTGCGAAAAAGTTCCGAAAAATCCGAAATGCCCGATAAACGCTGCTTAGAAAACCTTGCTGAAAAAAGGTTGTAGGGACAAACCGCTCTCAAAAACTTTGACCTGTGAGAGCACCACTTACCGATATCCAAGTACATCTGAAACATTTCCAGACAATATCGAGGTCCTACAATGATAATAGTTCTGATCATAACCACTTTATATTTTTCTTTTCAACATTTTCCATTTGACTATTCTAACGAGGCCAGCAATGCGAACACAATCCGTATCCAAAGAGATGATTTGCATAGCGCTTTGTGGAGTGTTGAGTGGAGTGATAAGAGTGATAAAGAGTGTTTTCGAAGTTCATGAACATTTTGGCACCTGTCATCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>326 292 211 171</canonical_bands>
                <polymorphic_bands>463 326 211</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>371 281 167 130 51</canonical_bands>
                <polymorphic_bands>422 281 167 130</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>357 167 148 130 61 51 41 20 14 11</canonical_bands>
                <polymorphic_bands>357 167 148 130 65 61 41 20 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCTATTACAGGGTTTCACAGA</pcr_primer_p1>
		<pcr_primer_p2>CTTTCAGATTATTCCAATTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CTTCTATTACAGGGTTTCACAGAACTTACACGAAATCTGATGGATTTATAAGACCAAGAGCAAAAAGGAAAACGTATGGAAGTTCTGCGAAGATGTAGCAGAAGAGAAAGGCAACAAGGCCGTATGTAGCATTTATCTGTTTTTTGGTATTTTCAGCGGATTTGACTGGGCCAGGAGAACGGAGCTCAATAACTAAGAAAATGGTGAGAACGATCATGATGAAAATTGGAATAATCTGAAAG</canonical_amplicon>
		<polymorphic_amplicon>CTTCTATTACAGGGTTTCACAGAACTTACACGAAATCTGATGGATTTATAAGACCAAGAGCAAAAAGGAAAACGTATGGAAGTTCTGCGAAGATGTAGCAGAAGAGAAAGGCAACAAGGCCGTATGTAGCATTTATCTGTTTTTTGGTATTTTCAGCGGATTTGACTGGGRCAGGAGAACGGAGCTCAATAACTAAGAAAATGGTGAGAACGATCATGATGAAAATTGGAATAATCTGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8655</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>52139</contig_pos>
        <strand>-</strand>
        <context>AACAATTGCG[A/T]AAAAGTTCCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTCATTCTATTAAAATGTTCGAAGAGTTATATTTTCTTAACAATTGCG</left_flank>
        <right_flank>AAAAGTTCCGAAAAATCCGAAATGCCCGATAAACGCTGCTTAGAAAACCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGGGGCGGAGATGCGCCCCCGTCCCGCCTGACGAAAAAAAAACTTTGTTAAAGAAATCAAAAAGAATCAGTAACCGAAATTAAAGAATCAGTAACCGAATTTTGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGGCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAANNNNNNNNNNGTCAGGTCCTTCTATTACAGGGTTTCACAGAACTTACACGAAATCTGATGGATTTATAAGACCAAGAGCAAAAAGGAAAACGTATGGAAGTTCTGCGAAGATGTAGCAGAAGAGAAAGGCAACAAGGCCGTATGTAGCATTTATCTGTTTTTTGGTATTTTCAGCGGATTTGACTGGGCCAGGAGAACGGAGCTCAATAACTAAGAAAATGGTGAGAACGATCATGATGAAAATTGGAATAATCTGAAAGTAAGGTTTATTTTTCATTCTATTAAAATGTTCGAAGAGTTATATTTTCTTAACAATTGCGAAAAAGTTCCGAAAAATCCGAAATGCCCGATAAACGCTGCTTAGAAAACCTTGCTGAAAAAAGGTTGTAGGGACAAACCGCTCTCAAAAACTTTGACCTGTGAGAGCACCACTTACCGATATCCAAGTACATCTGAAACATTTCCAGACAATATCGAGGTCCTACAATGATAATAGTTCTGATCATAACCACTTTATATTTTTCTTTTCAACATTTTCCATTTGACTATTCTAACGAGGCCAGCAATGCGAACACAATCCGTATCCAAAGAGATGATTTGCATAGCGCTTTGTGGAGTGTTGAGTGGAGTGATAAGAGTGATAAAGAGTGTTTTCGAAGTTCATGAACATTTTGGCACCTGTCATCATTCGTATCGCTACTATGTTGTAGGGGTTAGCACGGTACATGTAAGACTATGATAGTTCAACTTCATTCCAGCTAATTTATTTCCTCGCCTACCAAATTATCAATCAATTCATTCTATGGCTAATTATCTACATC</canonical>
            <polymorphic>GCGGGGCGGAGATGCGCCCCCGTCCCGCCTGACGAAAAAAAAACTTTGTTAAAGAAATCAAAAAGAATCAGTAACCGAAATTAAAGAATCAGTAACCGAATTTTGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGGCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAANNNNNNNNNNGTCAGGTCCTTCTATTACAGGGTTTCACAGAACTTACACGAAATCTGATGGATTTATAAGACCAAGAGCAAAAAGGAAAACGTATGGAAGTTCTGCGAAGATGTAGCAGAAGAGAAAGGCAACAAGGCCGTATGTAGCATTTATCTGTTTTTTGGTATTTTCAGCGGATTTGACTGGGCCAGGAGAACGGAGCTCAATAACTAAGAAAATGGTGAGAACGATCATGATGAAAATTGGAATAATCTGAAAGTAAGGTTTATTTTTCATTCTATTAAAATGTTCGAAGAGTTATATTTTCTTAACAATTGCGWAAAAGTTCCGAAAAATCCGAAATGCCCGATAAACGCTGCTTAGAAAACCTTGCTGAAAAAAGGTTGTAGGGACAAACCGCTCTCAAAAACTTTGACCTGTGAGAGCACCACTTACCGATATCCAAGTACATCTGAAACATTTCCAGACAATATCGAGGTCCTACAATGATAATAGTTCTGATCATAACCACTTTATATTTTTCTTTTCAACATTTTCCATTTGACTATTCTAACGAGGCCAGCAATGCGAACACAATCCGTATCCAAAGAGATGATTTGCATAGCGCTTTGTGGAGTGTTGAGTGGAGTGATAAGAGTGATAAAGAGTGTTTTCGAAGTTCATGAACATTTTGGCACCTGTCATCATTCGTATCGCTACTATGTTGTAGGGGTTAGCACGGTACATGTAAGACTATGATAGTTCAACTTCATTCCAGCTAATTTATTTCCTCGCCTACCAAATTATCAATCAATTCATTCTATGGCTAATTATCTACATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>503 362 135</canonical_bands>
                <polymorphic_bands>638 362</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAAATTGGAATAATCTGAAAG</pcr_primer_p1>
		<pcr_primer_p2>ATTGTAGGACCTCGATATTGTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGAAAATTGGAATAATCTGAAAGTAAGGTTTATTTTTCATTCTATTAAAATGTTCGAAGAGTTATATTTTCTTAACAATTGCGAAAAAGTTCCGAAAAATCCGAAATGCCCGATAAACGCTGCTTAGAAAACCTTGCTGAAAAAAGGTTGTAGGGACAAACCGCTCTCAAAAACTTTGACCTGTGAGAGCACCACTTACCGATATCCAAGTACATCTGAAACATTTCCAGACAATATCGAGGTCCTACAAT</canonical_amplicon>
		<polymorphic_amplicon>TGAAAATTGGAATAATCTGAAAGTAAGGTTTATTTTTCATTCTATTAAAATGTTCGAAGAGTTATATTTTCTTAACAATTGCGWAAAAGTTCCGAAAAATCCGAAATGCCCGATAAACGCTGCTTAGAAAACCTTGCTGAAAAAAGGTTGTAGGGACAAACCGCTCTCAAAAACTTTGACCTGTGAGAGCACCACTTACCGATATCCAAGTACATCTGAAACATTTCCAGACAATATCGAGGTCCTACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8656</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>52158</contig_pos>
        <strand>-</strand>
        <context>CGAAAAATCC[C/G]AAATGCCCGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCGAAGAGTTATATTTTCTTAACAATTGCGAAAAAGTTCCGAAAAATCC</left_flank>
        <right_flank>AAATGCCCGATAAACGCTGCTTAGAAAACCTTGCTGAAAAAAGGTTGTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGTCCCGCCTGACGAAAAAAAAACTTTGTTAAAGAAATCAAAAAGAATCAGTAACCGAAATTAAAGAATCAGTAACCGAATTTTGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGGCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAANNNNNNNNNNGTCAGGTCCTTCTATTACAGGGTTTCACAGAACTTACACGAAATCTGATGGATTTATAAGACCAAGAGCAAAAAGGAAAACGTATGGAAGTTCTGCGAAGATGTAGCAGAAGAGAAAGGCAACAAGGCCGTATGTAGCATTTATCTGTTTTTTGGTATTTTCAGCGGATTTGACTGGGCCAGGAGAACGGAGCTCAATAACTAAGAAAATGGTGAGAACGATCATGATGAAAATTGGAATAATCTGAAAGTAAGGTTTATTTTTCATTCTATTAAAATGTTCGAAGAGTTATATTTTCTTAACAATTGCGAAAAAGTTCCGAAAAATCCGAAATGCCCGATAAACGCTGCTTAGAAAACCTTGCTGAAAAAAGGTTGTAGGGACAAACCGCTCTCAAAAACTTTGACCTGTGAGAGCACCACTTACCGATATCCAAGTACATCTGAAACATTTCCAGACAATATCGAGGTCCTACAATGATAATAGTTCTGATCATAACCACTTTATATTTTTCTTTTCAACATTTTCCATTTGACTATTCTAACGAGGCCAGCAATGCGAACACAATCCGTATCCAAAGAGATGATTTGCATAGCGCTTTGTGGAGTGTTGAGTGGAGTGATAAGAGTGATAAAGAGTGTTTTCGAAGTTCATGAACATTTTGGCACCTGTCATCATTCGTATCGCTACTATGTTGTAGGGGTTAGCACGGTACATGTAAGACTATGATAGTTCAACTTCATTCCAGCTAATTTATTTCCTCGCCTACCAAATTATCAATCAATTCATTCTATGGCTAATTATCTACATCACCTTCTTGAGAGCTATGG</canonical>
            <polymorphic>CCGTCCCGCCTGACGAAAAAAAAACTTTGTTAAAGAAATCAAAAAGAATCAGTAACCGAAATTAAAGAATCAGTAACCGAATTTTGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGGCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAANNNNNNNNNNGTCAGGTCCTTCTATTACAGGGTTTCACAGAACTTACACGAAATCTGATGGATTTATAAGACCAAGAGCAAAAAGGAAAACGTATGGAAGTTCTGCGAAGATGTAGCAGAAGAGAAAGGCAACAAGGCCGTATGTAGCATTTATCTGTTTTTTGGTATTTTCAGCGGATTTGACTGGGCCAGGAGAACGGAGCTCAATAACTAAGAAAATGGTGAGAACGATCATGATGAAAATTGGAATAATCTGAAAGTAAGGTTTATTTTTCATTCTATTAAAATGTTCGAAGAGTTATATTTTCTTAACAATTGCGAAAAAGTTCCGAAAAATCCSAAATGCCCGATAAACGCTGCTTAGAAAACCTTGCTGAAAAAAGGTTGTAGGGACAAACCGCTCTCAAAAACTTTGACCTGTGAGAGCACCACTTACCGATATCCAAGTACATCTGAAACATTTCCAGACAATATCGAGGTCCTACAATGATAATAGTTCTGATCATAACCACTTTATATTTTTCTTTTCAACATTTTCCATTTGACTATTCTAACGAGGCCAGCAATGCGAACACAATCCGTATCCAAAGAGATGATTTGCATAGCGCTTTGTGGAGTGTTGAGTGGAGTGATAAGAGTGATAAAGAGTGTTTTCGAAGTTCATGAACATTTTGGCACCTGTCATCATTCGTATCGCTACTATGTTGTAGGGGTTAGCACGGTACATGTAAGACTATGATAGTTCAACTTCATTCCAGCTAATTTATTTCCTCGCCTACCAAATTATCAATCAATTCATTCTATGGCTAATTATCTACATCACCTTCTTGAGAGCTATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>340 216 199 115 75 46 9</canonical_bands>
                <polymorphic_bands>340 216 199 124 75 46</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAAATTGGAATAATCTGAAAG</pcr_primer_p1>
		<pcr_primer_p2>ATTGTAGGACCTCGATATTGTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGAAAATTGGAATAATCTGAAAGTAAGGTTTATTTTTCATTCTATTAAAATGTTCGAAGAGTTATATTTTCTTAACAATTGCGAAAAAGTTCCGAAAAATCCGAAATGCCCGATAAACGCTGCTTAGAAAACCTTGCTGAAAAAAGGTTGTAGGGACAAACCGCTCTCAAAAACTTTGACCTGTGAGAGCACCACTTACCGATATCCAAGTACATCTGAAACATTTCCAGACAATATCGAGGTCCTACAAT</canonical_amplicon>
		<polymorphic_amplicon>TGAAAATTGGAATAATCTGAAAGTAAGGTTTATTTTTCATTCTATTAAAATGTTCGAAGAGTTATATTTTCTTAACAATTGCGAAAAAGTTCCGAAAAATCCSAAATGCCCGATAAACGCTGCTTAGAAAACCTTGCTGAAAAAAGGTTGTAGGGACAAACCGCTCTCAAAAACTTTGACCTGTGAGAGCACCACTTACCGATATCCAAGTACATCTGAAACATTTCCAGACAATATCGAGGTCCTACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8657</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>52226</contig_pos>
        <strand>+</strand>
        <context>CCGCTCTCAA[A/G]AACTTTGACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCTTAGAAAACCTTGCTGAAAAAAGGTTGTAGGGACAAACCGCTCTCAA</left_flank>
        <right_flank>AACTTTGACCTGTGAGAGCACCACTTACCGATATCCAAGTACATCTGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAGTAACCGAATTTTGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGGCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAANNNNNNNNNNGTCAGGTCCTTCTATTACAGGGTTTCACAGAACTTACACGAAATCTGATGGATTTATAAGACCAAGAGCAAAAAGGAAAACGTATGGAAGTTCTGCGAAGATGTAGCAGAAGAGAAAGGCAACAAGGCCGTATGTAGCATTTATCTGTTTTTTGGTATTTTCAGCGGATTTGACTGGGCCAGGAGAACGGAGCTCAATAACTAAGAAAATGGTGAGAACGATCATGATGAAAATTGGAATAATCTGAAAGTAAGGTTTATTTTTCATTCTATTAAAATGTTCGAAGAGTTATATTTTCTTAACAATTGCGAAAAAGTTCCGAAAAATCCGAAATGCCCGATAAACGCTGCTTAGAAAACCTTGCTGAAAAAAGGTTGTAGGGACAAACCGCTCTCAAAAACTTTGACCTGTGAGAGCACCACTTACCGATATCCAAGTACATCTGAAACATTTCCAGACAATATCGAGGTCCTACAATGATAATAGTTCTGATCATAACCACTTTATATTTTTCTTTTCAACATTTTCCATTTGACTATTCTAACGAGGCCAGCAATGCGAACACAATCCGTATCCAAAGAGATGATTTGCATAGCGCTTTGTGGAGTGTTGAGTGGAGTGATAAGAGTGATAAAGAGTGTTTTCGAAGTTCATGAACATTTTGGCACCTGTCATCATTCGTATCGCTACTATGTTGTAGGGGTTAGCACGGTACATGTAAGACTATGATAGTTCAACTTCATTCCAGCTAATTTATTTCCTCGCCTACCAAATTATCAATCAATTCATTCTATGGCTAATTATCTACATCACCTTCTTGAGAGCTATGGTAATCTTGGAGGTCAAGCGTGGACTGTATGTTTCAACTACCGTGTTTTCTGTAATAGCCACCCTGGAG</canonical>
            <polymorphic>ATCAGTAACCGAATTTTGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGGCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAANNNNNNNNNNGTCAGGTCCTTCTATTACAGGGTTTCACAGAACTTACACGAAATCTGATGGATTTATAAGACCAAGAGCAAAAAGGAAAACGTATGGAAGTTCTGCGAAGATGTAGCAGAAGAGAAAGGCAACAAGGCCGTATGTAGCATTTATCTGTTTTTTGGTATTTTCAGCGGATTTGACTGGGCCAGGAGAACGGAGCTCAATAACTAAGAAAATGGTGAGAACGATCATGATGAAAATTGGAATAATCTGAAAGTAAGGTTTATTTTTCATTCTATTAAAATGTTCGAAGAGTTATATTTTCTTAACAATTGCGAAAAAGTTCCGAAAAATCCGAAATGCCCGATAAACGCTGCTTAGAAAACCTTGCTGAAAAAAGGTTGTAGGGACAAACCGCTCTCAARAACTTTGACCTGTGAGAGCACCACTTACCGATATCCAAGTACATCTGAAACATTTCCAGACAATATCGAGGTCCTACAATGATAATAGTTCTGATCATAACCACTTTATATTTTTCTTTTCAACATTTTCCATTTGACTATTCTAACGAGGCCAGCAATGCGAACACAATCCGTATCCAAAGAGATGATTTGCATAGCGCTTTGTGGAGTGTTGAGTGGAGTGATAAGAGTGATAAAGAGTGTTTTCGAAGTTCATGAACATTTTGGCACCTGTCATCATTCGTATCGCTACTATGTTGTAGGGGTTAGCACGGTACATGTAAGACTATGATAGTTCAACTTCATTCCAGCTAATTTATTTCCTCGCCTACCAAATTATCAATCAATTCATTCTATGGCTAATTATCTACATCACCTTCTTGAGAGCTATGGTAATCTTGGAGGTCAAGCGTGGACTGTATGTTTCAACTACCGTGTTTTCTGTAATAGCCACCCTGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAATTGGAATAATCTGAAAG</pcr_primer_p1>
		<pcr_primer_p2>ATTGTAGGACCTCGATATTGTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGAAAATTGGAATAATCTGAAAGTAAGGTTTATTTTTCATTCTATTAAAATGTTCGAAGAGTTATATTTTCTTAACAATTGCGAAAAAGTTCCGAAAAATCCGAAATGCCCGATAAACGCTGCTTAGAAAACCTTGCTGAAAAAAGGTTGTAGGGACAAACCGCTCTCAAAAACTTTGACCTGTGAGAGCACCACTTACCGATATCCAAGTACATCTGAAACATTTCCAGACAATATCGAGGTCCTACAAT</canonical_amplicon>
		<polymorphic_amplicon>TGAAAATTGGAATAATCTGAAAGTAAGGTTTATTTTTCATTCTATTAAAATGTTCGAAGAGTTATATTTTCTTAACAATTGCGAAAAAGTTCCGAAAAATCCGAAATGCCCGATAAACGCTGCTTAGAAAACCTTGCTGAAAAAAGGTTGTAGGGACAAACCGCTCTCAARAACTTTGACCTGTGAGAGCACCACTTACCGATATCCAAGTACATCTGAAACATTTCCAGACAATATCGAGGTCCTACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8658</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>52251</contig_pos>
        <strand>+</strand>
        <context>AGAGCACCAC[A/T]TACCGRTATC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTTGTAGGGACAAACCGCTCTCAAAAACTTTGACCTGTGAGAGCACCAC</left_flank>
        <right_flank>TACCGATATCCAAGTACATCTGAAACATTTCCAGACAATATCGAGGTCCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGAGTCGACCTGCAGGCATGCAAGCTTGGCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAANNNNNNNNNNGTCAGGTCCTTCTATTACAGGGTTTCACAGAACTTACACGAAATCTGATGGATTTATAAGACCAAGAGCAAAAAGGAAAACGTATGGAAGTTCTGCGAAGATGTAGCAGAAGAGAAAGGCAACAAGGCCGTATGTAGCATTTATCTGTTTTTTGGTATTTTCAGCGGATTTGACTGGGCCAGGAGAACGGAGCTCAATAACTAAGAAAATGGTGAGAACGATCATGATGAAAATTGGAATAATCTGAAAGTAAGGTTTATTTTTCATTCTATTAAAATGTTCGAAGAGTTATATTTTCTTAACAATTGCGAAAAAGTTCCGAAAAATCCGAAATGCCCGATAAACGCTGCTTAGAAAACCTTGCTGAAAAAAGGTTGTAGGGACAAACCGCTCTCAAAAACTTTGACCTGTGAGAGCACCACTTACCGATATCCAAGTACATCTGAAACATTTCCAGACAATATCGAGGTCCTACAATGATAATAGTTCTGATCATAACCACTTTATATTTTTCTTTTCAACATTTTCCATTTGACTATTCTAACGAGGCCAGCAATGCGAACACAATCCGTATCCAAAGAGATGATTTGCATAGCGCTTTGTGGAGTGTTGAGTGGAGTGATAAGAGTGATAAAGAGTGTTTTCGAAGTTCATGAACATTTTGGCACCTGTCATCATTCGTATCGCTACTATGTTGTAGGGGTTAGCACGGTACATGTAAGACTATGATAGTTCAACTTCATTCCAGCTAATTTATTTCCTCGCCTACCAAATTATCAATCAATTCATTCTATGGCTAATTATCTACATCACCTTCTTGAGAGCTATGGTAATCTTGGAGGTCAAGCGTGGACTGTATGTTTCAACTACCGTGTTTTCTGTAATAGCCACCCTGGAGATGCACTTTGAGCTCAATCATCTCG</canonical>
            <polymorphic>CTAGAGTCGACCTGCAGGCATGCAAGCTTGGCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAANNNNNNNNNNGTCAGGTCCTTCTATTACAGGGTTTCACAGAACTTACACGAAATCTGATGGATTTATAAGACCAAGAGCAAAAAGGAAAACGTATGGAAGTTCTGCGAAGATGTAGCAGAAGAGAAAGGCAACAAGGCCGTATGTAGCATTTATCTGTTTTTTGGTATTTTCAGCGGATTTGACTGGGCCAGGAGAACGGAGCTCAATAACTAAGAAAATGGTGAGAACGATCATGATGAAAATTGGAATAATCTGAAAGTAAGGTTTATTTTTCATTCTATTAAAATGTTCGAAGAGTTATATTTTCTTAACAATTGCGAAAAAGTTCCGAAAAATCCGAAATGCCCGATAAACGCTGCTTAGAAAACCTTGCTGAAAAAAGGTTGTAGGGACAAACCGCTCTCAAAAACTTTGACCTGTGAGAGCACCACWTACCGATATCCAAGTACATCTGAAACATTTCCAGACAATATCGAGGTCCTACAATGATAATAGTTCTGATCATAACCACTTTATATTTTTCTTTTCAACATTTTCCATTTGACTATTCTAACGAGGCCAGCAATGCGAACACAATCCGTATCCAAAGAGATGATTTGCATAGCGCTTTGTGGAGTGTTGAGTGGAGTGATAAGAGTGATAAAGAGTGTTTTCGAAGTTCATGAACATTTTGGCACCTGTCATCATTCGTATCGCTACTATGTTGTAGGGGTTAGCACGGTACATGTAAGACTATGATAGTTCAACTTCATTCCAGCTAATTTATTTCCTCGCCTACCAAATTATCAATCAATTCATTCTATGGCTAATTATCTACATCACCTTCTTGAGAGCTATGGTAATCTTGGAGGTCAAGCGTGGACTGTATGTTTCAACTACCGTGTTTTCTGTAATAGCCACCCTGGAGATGCACTTTGAGCTCAATCATCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAATTGGAATAATCTGAAAG</pcr_primer_p1>
		<pcr_primer_p2>ATTGTAGGACCTCGATATTGTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGAAAATTGGAATAATCTGAAAGTAAGGTTTATTTTTCATTCTATTAAAATGTTCGAAGAGTTATATTTTCTTAACAATTGCGAAAAAGTTCCGAAAAATCCGAAATGCCCGATAAACGCTGCTTAGAAAACCTTGCTGAAAAAAGGTTGTAGGGACAAACCGCTCTCAAAAACTTTGACCTGTGAGAGCACCACTTACCGATATCCAAGTACATCTGAAACATTTCCAGACAATATCGAGGTCCTACAAT</canonical_amplicon>
		<polymorphic_amplicon>TGAAAATTGGAATAATCTGAAAGTAAGGTTTATTTTTCATTCTATTAAAATGTTCGAAGAGTTATATTTTCTTAACAATTGCGAAAAAGTTCCGAAAAATCCGAAATGCCCGATAAACGCTGCTTAGAAAACCTTGCTGAAAAAAGGTTGTAGGGACAAACCGCTCTCAAAAACTTTGACCTGTGAGAGCACCACWTACCGATATCCAAGTACATCTGAAACATTTCCAGACAATATCGAGGTCCTACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8659</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>52257</contig_pos>
        <strand>+</strand>
        <context>CCACWTACCG[A/G]TATCCAAGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGGACAAACCGCTCTCAAAAACTTTGACCTGTGAGAGCACCACTTACCG</left_flank>
        <right_flank>TATCCAAGTACATCTGAAACATTTCCAGACAATATCGAGGTCCTACAATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGACCTGCAGGCATGCAAGCTTGGCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAANNNNNNNNNNGTCAGGTCCTTCTATTACAGGGTTTCACAGAACTTACACGAAATCTGATGGATTTATAAGACCAAGAGCAAAAAGGAAAACGTATGGAAGTTCTGCGAAGATGTAGCAGAAGAGAAAGGCAACAAGGCCGTATGTAGCATTTATCTGTTTTTTGGTATTTTCAGCGGATTTGACTGGGCCAGGAGAACGGAGCTCAATAACTAAGAAAATGGTGAGAACGATCATGATGAAAATTGGAATAATCTGAAAGTAAGGTTTATTTTTCATTCTATTAAAATGTTCGAAGAGTTATATTTTCTTAACAATTGCGAAAAAGTTCCGAAAAATCCGAAATGCCCGATAAACGCTGCTTAGAAAACCTTGCTGAAAAAAGGTTGTAGGGACAAACCGCTCTCAAAAACTTTGACCTGTGAGAGCACCACTTACCGATATCCAAGTACATCTGAAACATTTCCAGACAATATCGAGGTCCTACAATGATAATAGTTCTGATCATAACCACTTTATATTTTTCTTTTCAACATTTTCCATTTGACTATTCTAACGAGGCCAGCAATGCGAACACAATCCGTATCCAAAGAGATGATTTGCATAGCGCTTTGTGGAGTGTTGAGTGGAGTGATAAGAGTGATAAAGAGTGTTTTCGAAGTTCATGAACATTTTGGCACCTGTCATCATTCGTATCGCTACTATGTTGTAGGGGTTAGCACGGTACATGTAAGACTATGATAGTTCAACTTCATTCCAGCTAATTTATTTCCTCGCCTACCAAATTATCAATCAATTCATTCTATGGCTAATTATCTACATCACCTTCTTGAGAGCTATGGTAATCTTGGAGGTCAAGCGTGGACTGTATGTTTCAACTACCGTGTTTTCTGTAATAGCCACCCTGGAGATGCACTTTGAGCTCAATCATCTCGGTTCCC</canonical>
            <polymorphic>TCGACCTGCAGGCATGCAAGCTTGGCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAANNNNNNNNNNGTCAGGTCCTTCTATTACAGGGTTTCACAGAACTTACACGAAATCTGATGGATTTATAAGACCAAGAGCAAAAAGGAAAACGTATGGAAGTTCTGCGAAGATGTAGCAGAAGAGAAAGGCAACAAGGCCGTATGTAGCATTTATCTGTTTTTTGGTATTTTCAGCGGATTTGACTGGGCCAGGAGAACGGAGCTCAATAACTAAGAAAATGGTGAGAACGATCATGATGAAAATTGGAATAATCTGAAAGTAAGGTTTATTTTTCATTCTATTAAAATGTTCGAAGAGTTATATTTTCTTAACAATTGCGAAAAAGTTCCGAAAAATCCGAAATGCCCGATAAACGCTGCTTAGAAAACCTTGCTGAAAAAAGGTTGTAGGGACAAACCGCTCTCAAAAACTTTGACCTGTGAGAGCACCACTTACCGRTATCCAAGTACATCTGAAACATTTCCAGACAATATCGAGGTCCTACAATGATAATAGTTCTGATCATAACCACTTTATATTTTTCTTTTCAACATTTTCCATTTGACTATTCTAACGAGGCCAGCAATGCGAACACAATCCGTATCCAAAGAGATGATTTGCATAGCGCTTTGTGGAGTGTTGAGTGGAGTGATAAGAGTGATAAAGAGTGTTTTCGAAGTTCATGAACATTTTGGCACCTGTCATCATTCGTATCGCTACTATGTTGTAGGGGTTAGCACGGTACATGTAAGACTATGATAGTTCAACTTCATTCCAGCTAATTTATTTCCTCGCCTACCAAATTATCAATCAATTCATTCTATGGCTAATTATCTACATCACCTTCTTGAGAGCTATGGTAATCTTGGAGGTCAAGCGTGGACTGTATGTTTCAACTACCGTGTTTTCTGTAATAGCCACCCTGGAGATGCACTTTGAGCTCAATCATCTCGGTTCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGAATAATCTGAAAGTAAGGTT</pcr_primer_p1>
		<pcr_primer_p2>ATTATCATTGTAGGACCTCGATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTGGAATAATCTGAAAGTAAGGTTTATTTTTCATTCTATTAAAATGTTCGAAGAGTTATATTTTCTTAACAATTGCGAAAAAGTTCCGAAAAATCCGAAATGCCCGATAAACGCTGCTTAGAAAACCTTGCTGAAAAAAGGTTGTAGGGACAAACCGCTCTCAAAAACTTTGACCTGTGAGAGCACCACTTACCGATATCCAAGTACATCTGAAACATTTCCAGACAATATCGAGGTCCTACAATGATAAT</canonical_amplicon>
		<polymorphic_amplicon>TTGGAATAATCTGAAAGTAAGGTTTATTTTTCATTCTATTAAAATGTTCGAAGAGTTATATTTTCTTAACAATTGCGAAAAAGTTCCGAAAAATCCGAAATGCCCGATAAACGCTGCTTAGAAAACCTTGCTGAAAAAAGGTTGTAGGGACAAACCGCTCTCAAAAACTTTGACCTGTGAGAGCACCACTTACCGRTATCCAAGTACATCTGAAACATTTCCAGACAATATCGAGGTCCTACAATGATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8660</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>53980</contig_pos>
        <strand>+</strand>
        <context>ACAGTCAAGT[C/T]GACGCCTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAATCAATAACAATTTCAGACAACTAGACGAATACATCTACAGTCAAGT</left_flank>
        <right_flank>GACGCCTTCATATGCTCATCTATGTGTATTGGAATCATTATATACGCTAT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCTAAATTTCTCATTGCGCGGGAATTCAAACCCTCGTCCCTACAACCTTTTTTCAGCAAGGTTTTCTAAGCAGCGTTTATCGGGCATTTCGGATTTTTCGGAACTTTTTCGCAATTGTTAAGAAAATATAACTCTTCGAACATTTTAATAGAATGAAAAATAAACCTTACTTTCAGATTATTCCAATTTTCATCATGATCGTTCTCACCATTTTCTTAGTTATTGAGCTCCGTTCTCCTGGCCCAGTCAAATCCGCTGAAAATACCAAAAAACAGATAAATGCTACATACGGCCTTGTTGCCTTTCTCTTCTGCTACATCTTCGCAGAACTTCCATACGTTTTCCTTTTTGCTCTTGGTCTTATAAATCCATCAGATTTCGTGTAAGTTCTGTGAAACCTGTAATAGAAGGACCTGACAACTTTGGCTCAAAGTTGTTGAAGGATCTACTAATCAATAACAATTTCAGACAACTAGACGAATACATCTACAGTCAAGTTGACGCCTTCATATGCTCATCTATGTGTATTGGAATCATTATATACGCTATGATGTCTGCTCAATACAGAGACACAATTTGTGCAACATTCTGTAGAAGCCACAAAATTTCTCCAGGACCTTCGGTATTCCTTCGAGACTGAAATTTAAAAAATTGATCTTTTCAGAGAGAAACCGACAAAATCGTCGTCAAATGATAAATATTTTTCGTGAGAAATAAAGAAGAGGAAGTGGCTAATTAAGGGTTGCTGGGGGTGTGGGATTAGCTGGTGTGTCTGCTTATTCCAAGTATGAAATTATTTTATTTTTTGTGGTCACAATTTTCGAGGTTTTTAAATTGTAGTTTCCGTATTTTTGAAGGCAATTTCAGTAAAATTATTTCAGGTTTGTTGAATTACTGTTTTAGCTCTAAAGACAATTATAGTTCAATTATCTCGGTTTCTACAAAACATATCAAAAAATTGACAACTGATAATTTGTTTATCATAATATCAGAAATATT</canonical>
            <polymorphic>GCCTAAATTTCTCATTGCGCGGGAATTCAAACCCTCGTCCCTACAACCTTTTTTCAGCAAGGTTTTCTAAGCAGCGTTTATCGGGCATTTCGGATTTTTCGGAACTTTTTCGCAATTGTTAAGAAAATATAACTCTTCGAACATTTTAATAGAATGAAAAATAAACCTTACTTTCAGATTATTCCAATTTTCATCATGATCGTTCTCACCATTTTCTTAGTTATTGAGCTCCGTTCTCCTGGCCCAGTCAAATCCGCTGAAAATACCAAAAAACAGATAAATGCTACATACGGCCTTGTTGCCTTTCTCTTCTGCTACATCTTCGCAGAACTTCCATACGTTTTCCTTTTTGCTCTTGGTCTTATAAATCCATCAGATTTCGTGTAAGTTCTGTGAAACCTGTAATAGAAGGACCTGACAACTTTGGCTCAAAGTTGTTGAAGGATCTACTAATCAATAACAATTTCAGACAACTAGACGAATACATCTACAGTCAAGTYGACGCCTTCATATGCTCATCTATGTGTATTGGAATCATTATATACGCTATGATGTCTGCTCAATACAGAGACACAATTTGTGCAACATTCTGTAGAAGCCACAAAATTTCTCCAGGACCTTCGGTATTCCTTCGAGACTGAAATTTAAAAAATTGATCTTTTCAGAGAGAAACCGACAAAATCGTCGTCAAATGATAAATATTTTTCGTGAGAAATAAAGAAGAGGAAGTGGCTAATTAAGGGTTGCTGGGGGTGTGGGATTAGCTGGTGTGTCTGCTTATTCCAAGTATGAAATTATTTTATTTTTTGTGGTCACAATTTTCGAGGTTTTTAAATTGTAGTTTCCGTATTTTTGAAGGCAATTTCAGTAAAATTATTTCAGGTTTGTTGAATTACTGTTTTAGCTCTAAAGACAATTATAGTTCAATTATCTCGGTTTCTACAAAACATATCAAAAAATTGACAACTGATAATTTGTTTATCATAATATCAGAAATATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACCTGTAATAGAAGGACCTGAC</pcr_primer_p1>
		<pcr_primer_p2>AAATTTCAGTCTCGAAGGAATAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACCTGTAATAGAAGGACCTGACAACTTTGGCTCAAAGTTGTTGAAGGATCTACTAATCAATAACAATTTCAGACAACTAGACGAATACATCTACAGTCAAGTTGACGCCTTCATATGCTCATCTATGTGTATTGGAATCATTATATACGCTATGATGTCTGCTCAATACAGAGACACAATTTGTGCAACATTCTGTAGAAGCCACAAAATTTCTCCAGGACCTTCGGTATTCCTTCGAGACTGAAATTT</canonical_amplicon>
		<polymorphic_amplicon>AACCTGTAATAGAAGGACCTGACAACTTTGGCTCAAAGTTGTTGAAGGATCTACTAATCAATAACAATTTCAGACAACTAGACGAATACATCTACAGTCAAGTYGACGCCTTCATATGCTCATCTATGTGTATTGGAATCATTATATACGCTATGATGTCTGCTCAATACAGAGACACAATTTGTGCAACATTCTGTAGAAGCCACAAAATTTCTCCAGGACCTTCGGTATTCCTTCGAGACTGAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8696</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>53738</contig_pos>
        <strand></strand>
        <context>TCAAATCCGC[T/A]GAAAATACCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ACCATTTTCTTAGTTATTGAGCTCCGTTCTCCTGGCCCAGTCAAATCCGC</left_flank>
        <right_flank>GAAAATACCAAAAAACAGATAAATGCTACATACGGCCTTGTTGCCTTTCT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGAGTTCGGTTTAATCAACAAAAAGTTTTTATTGAATTTAATTTTTTTAAATCTGAAAGCCCCAAAAACGCGACCGAAAATATAGAAAGGCTGCAAAGAGGGACGAGGATTCGAATTACCGGGCAATGAGAAACCTAGGCTAGAAACCGCAGTGAGAAGCCTTTTTCATATAGAAAACTTTCCGGATTGTTTCAGCTGTTATCTCGTCCGCCACCTGATAGGAAGCCCGCCTGCTACCGTTGCCTAAATTTCTCATTGCGCGGGAATTCAAACCCTCGTCCCTACAACCTTTTTTCAGCAAGGTTTTCTAAGCAGCGTTTATCGGGCATTTCGGATTTTTCGGAACTTTTTCGCAATTGTTAAGAAAATATAACTCTTCGAACATTTTAATAGAATGAAAAATAAACCTTACTTTCAGATTATTCCAATTTTCATCATGATCGTTCTCACCATTTTCTTAGTTATTGAGCTCCGTTCTCCTGGCCCAGTCAAATCCGCTGAAAATACCAAAAAACAGATAAATGCTACATACGGCCTTGTTGCCTTTCTCTTCTGCTACATCTTCGCAGAACTTCCATACGTTTTCCTTTTTGCTCTTGGTCTTATAAATCCATCAGATTTCGTGTAAGTTCTGTGAAACCTGTAATAGAAGGACCTGACAACTTTGGCTCAAAGTTGTTGAAGGATCTACTAATCAATAACAATTTCAGACAACTAGACGAATACATCTACAGTCAAGTTGACGCCTTCATATGCTCATCTATGTGTATTGGAATCATTATATACGCTATGATGTCTGCTCAATACAGAGACACAATTTGTGCAACATTCTGTAGAAGCCACAAAATTTCTCCAGGACCTTCGGTATTCCTTCGAGACTGAAATTTAAAAAATTGATCTTTTCAGAGAGAAACCGACAAAATCGTCGTCAAATGATAAATATTTTTCGTGAGAAATAAAGAAGAGGAAGTGGCTAATTAAGGGTTGCTGGGGGTGTGG</canonical>
            <polymorphic>GTGAGTTCGGTTTAATCAACAAAAAGTTTTTATTGAATTTAATTTTTTTAAATCTGAAAGCCCCAAAAACGCGACCGAAAATATAGAAAGGCTGCAAAGAGGGACGAGGATTCGAATTACCGGGCAATGAGAAACCTAGGCTAGAAACCGCAGTGAGAAGCCTTTTTCATATAGAAAACTTTCCGGATTGTTTCAGCTGTTATCTCGTCCGCCACCTGATAGGAAGCCCGCCTGCTACCGTTGCCTAAATTTCTCATTGCGCGGGAATTCAAACCCTCGTCCCTACAACCTTTTTTCAGCAAGGTTTTCTAAGCAGCGTTTATCGGGCATTTCGGATTTTTCGGAACTTTTTCGCAATTGTTAAGAAAATATAACTCTTCGAACATTTTAATAGAATGAAAAATAAACCTTACTTTCAGATTATTCCAATTTTCATCATGATCGTTCTCACCATTTTCTTAGTTATTGAGCTCCGTTCTCCTGGCCCAGTCAAATCCGCWGAAAATACCAAAAAACAGATAAATGCTACATACGGCCTTGTTGCCTTTCTCTTCTGCTACATCTTCGCAGAACTTCCATACGTTTTCCTTTTTGCTCTTGGTCTTATAAATCCATCAGATTTCGTGTAAGTTCTGTGAAACCTGTAATAGAAGGACCTGACAACTTTGGCTCAAAGTTGTTGAAGGATCTACTAATCAATAACAATTTCAGACAACTAGACGAATACATCTACAGTCAAGTTGACGCCTTCATATGCTCATCTATGTGTATTGGAATCATTATATACGCTATGATGTCTGCTCAATACAGAGACACAATTTGTGCAACATTCTGTAGAAGCCACAAAATTTCTCCAGGACCTTCGGTATTCCTTCGAGACTGAAATTTAAAAAATTGATCTTTTCAGAGAGAAACCGACAAAATCGTCGTCAAATGATAAATATTTTTCGTGAGAAATAAAGAAGAGGAAGTGGCTAATTAAGGGTTGCTGGGGGTGTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>502 302 196</canonical_bands>
                <polymorphic_bands>804 196</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTCAGATTATTCCAATTTTCA</pcr_primer_p1>
		<pcr_primer_p2>GTCAGGTCCTTCTATTACAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTTCAGATTATTCCAATTTTCATCATGATCGTTCTCACCATTTTCTTAGTTATTGAGCTCCGTTCTCCTGGCCCAGTCAAATCCGCTGAAAATACCAAAAAACAGATAAATGCTACATACGGCCTTGTTGCCTTTCTCTTCTGCTACATCTTCGCAGAACTTCCATACGTTTTCCTTTTTGCTCTTGGTCTTATAAATCCATCAGATTTCGTGTAAGTTCTGTGAAACCTGTAATAGAAGGACCTGAC</canonical_amplicon>
		<polymorphic_amplicon>CTTTCAGATTATTCCAATTTTCATCATGATCGTTCTCACCATTTTCTTAGTTATTGAGCTCCGTTCTCCTGGCCCAGTCAAATCCGCWGAAAATACCAAAAAACAGATAAATGCTACATACGGCCTTGTTGCCTTTCTCTTCTGCTACATCTTCGCAGAACTTCCATACGTTTTCCTTTTTGCTCTTGGTCTTATAAATCCATCAGATTTCGTGTAAGTTCTGTGAAACCTGTAATAGAAGGACCTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8697</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>53722</contig_pos>
        <strand></strand>
        <context>CGTTCTCCTG[G/A]CCCAGTCAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CATCATGATCGTTCTCACCATTTTCTTAGTTATTGAGCTCCGTTCTCCTG</left_flank>
        <right_flank>CCCAGTCAAATCCGCTGAAAATACCAAAAAACAGATAAATGCTACATACG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGTGTGACAGGTTTTGTGAGTTCGGTTTAATCAACAAAAAGTTTTTATTGAATTTAATTTTTTTAAATCTGAAAGCCCCAAAAACGCGACCGAAAATATAGAAAGGCTGCAAAGAGGGACGAGGATTCGAATTACCGGGCAATGAGAAACCTAGGCTAGAAACCGCAGTGAGAAGCCTTTTTCATATAGAAAACTTTCCGGATTGTTTCAGCTGTTATCTCGTCCGCCACCTGATAGGAAGCCCGCCTGCTACCGTTGCCTAAATTTCTCATTGCGCGGGAATTCAAACCCTCGTCCCTACAACCTTTTTTCAGCAAGGTTTTCTAAGCAGCGTTTATCGGGCATTTCGGATTTTTCGGAACTTTTTCGCAATTGTTAAGAAAATATAACTCTTCGAACATTTTAATAGAATGAAAAATAAACCTTACTTTCAGATTATTCCAATTTTCATCATGATCGTTCTCACCATTTTCTTAGTTATTGAGCTCCGTTCTCCTGGCCCAGTCAAATCCGCTGAAAATACCAAAAAACAGATAAATGCTACATACGGCCTTGTTGCCTTTCTCTTCTGCTACATCTTCGCAGAACTTCCATACGTTTTCCTTTTTGCTCTTGGTCTTATAAATCCATCAGATTTCGTGTAAGTTCTGTGAAACCTGTAATAGAAGGACCTGACAACTTTGGCTCAAAGTTGTTGAAGGATCTACTAATCAATAACAATTTCAGACAACTAGACGAATACATCTACAGTCAAGTTGACGCCTTCATATGCTCATCTATGTGTATTGGAATCATTATATACGCTATGATGTCTGCTCAATACAGAGACACAATTTGTGCAACATTCTGTAGAAGCCACAAAATTTCTCCAGGACCTTCGGTATTCCTTCGAGACTGAAATTTAAAAAATTGATCTTTTCAGAGAGAAACCGACAAAATCGTCGTCAAATGATAAATATTTTTCGTGAGAAATAAAGAAGAGGAAGTGGCTAATTAAGG</canonical>
            <polymorphic>CGGTGTGACAGGTTTTGTGAGTTCGGTTTAATCAACAAAAAGTTTTTATTGAATTTAATTTTTTTAAATCTGAAAGCCCCAAAAACGCGACCGAAAATATAGAAAGGCTGCAAAGAGGGACGAGGATTCGAATTACCGGGCAATGAGAAACCTAGGCTAGAAACCGCAGTGAGAAGCCTTTTTCATATAGAAAACTTTCCGGATTGTTTCAGCTGTTATCTCGTCCGCCACCTGATAGGAAGCCCGCCTGCTACCGTTGCCTAAATTTCTCATTGCGCGGGAATTCAAACCCTCGTCCCTACAACCTTTTTTCAGCAAGGTTTTCTAAGCAGCGTTTATCGGGCATTTCGGATTTTTCGGAACTTTTTCGCAATTGTTAAGAAAATATAACTCTTCGAACATTTTAATAGAATGAAAAATAAACCTTACTTTCAGATTATTCCAATTTTCATCATGATCGTTCTCACCATTTTCTTAGTTATTGAGCTCCGTTCTCCTGRCCCAGTCAAATCCGCTGAAAATACCAAAAAACAGATAAATGCTACATACGGCCTTGTTGCCTTTCTCTTCTGCTACATCTTCGCAGAACTTCCATACGTTTTCCTTTTTGCTCTTGGTCTTATAAATCCATCAGATTTCGTGTAAGTTCTGTGAAACCTGTAATAGAAGGACCTGACAACTTTGGCTCAAAGTTGTTGAAGGATCTACTAATCAATAACAATTTCAGACAACTAGACGAATACATCTACAGTCAAGTTGACGCCTTCATATGCTCATCTATGTGTATTGGAATCATTATATACGCTATGATGTCTGCTCAATACAGAGACACAATTTGTGCAACATTCTGTAGAAGCCACAAAATTTCTCCAGGACCTTCGGTATTCCTTCGAGACTGAAATTTAAAAAATTGATCTTTTCAGAGAGAAACCGACAAAATCGTCGTCAAATGATAAATATTTTTCGTGAGAAATAAAGAAGAGGAAGTGGCTAATTAAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>499 204 170 127</canonical_bands>
                <polymorphic_bands>669 204 127</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>374 360 137 129</canonical_bands>
                <polymorphic_bands>734 137 129</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>497 374 129</canonical_bands>
                <polymorphic_bands>871 129</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 449 51</canonical_bands>
                <polymorphic_bands>551 449</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>244 171 134 134 76 51 49 36 31 30 20 14 10</canonical_bands>
                <polymorphic_bands>244 171 134 134 76 65 49 36 31 30 20 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTCAGATTATTCCAATTTTCA</pcr_primer_p1>
		<pcr_primer_p2>GTCAGGTCCTTCTATTACAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTTCAGATTATTCCAATTTTCATCATGATCGTTCTCACCATTTTCTTAGTTATTGAGCTCCGTTCTCCTGGCCCAGTCAAATCCGCTGAAAATACCAAAAAACAGATAAATGCTACATACGGCCTTGTTGCCTTTCTCTTCTGCTACATCTTCGCAGAACTTCCATACGTTTTCCTTTTTGCTCTTGGTCTTATAAATCCATCAGATTTCGTGTAAGTTCTGTGAAACCTGTAATAGAAGGACCTGAC</canonical_amplicon>
		<polymorphic_amplicon>CTTTCAGATTATTCCAATTTTCATCATGATCGTTCTCACCATTTTCTTAGTTATTGAGCTCCGTTCTCCTGRCCCAGTCAAATCCGCTGAAAATACCAAAAAACAGATAAATGCTACATACGGCCTTGTTGCCTTTCTCTTCTGCTACATCTTCGCAGAACTTCCATACGTTTTCCTTTTTGCTCTTGGTCTTATAAATCCATCAGATTTCGTGTAAGTTCTGTGAAACCTGTAATAGAAGGACCTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8698</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>63244</contig_pos>
        <strand></strand>
        <context>CAAAGAGCAA[G/T]TTTCTTTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACCCAACTGAATTTTTTTTCTCTGTCGTCTATATACTTCCAAAGAGCAA</left_flank>
        <right_flank>TTTCTTTTTTTGCTCATTATCTCCAGCCTAATCTCCCATGTATTCATTCT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCAAAATCATCTCACGTGACATGAAAGCCTCTTGACTAACCGAAGCTTCTTGGAAAACAAAGGAAAAGTGGTGATGGTTGGTTTTGGGTGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCCAATTTCCCATGGTGCGATTCTAATATGGGCAGAGGAGGACCAAAAGCGGCTCCCCTCTTCAGAATTTCAATATAAATCTCAATTCTGCTGCTTCATTCATGTGTTTGTGTTGGGCCGGGGCCCGCCATCGGATGCTGTCTTGACTCCTCTTCATTCAGTTTCATCAAAAAACTGCATTTGCAGAGACTAGAACAAGACACACACATTTCTTCCTTTTTTCCATTATTTTTATTATTATTATTGTGACTCAAGGAGGGGCTCTGGCTACTCTGGAATTCTTTTCAGATGTCTCCTTCCTAGATCTCAAGAATCTTATATTACAAACCCAACTGAATTTTTTTTCTCTGTCGTCTATATACTTCCAAAGAGCAAGTTTCTTTTTTTGCTCATTATCTCCAGCCTAATCTCCCATGTATTCATTCTGATTACGCAGTCTTCTTCCACACCCTTTCTTCTTCTTTTTTCTTCTTTTGGTCACTTACTTTTTTTTCACTACTTTCATATTTCTTCTTCTTCTTCTCGTTTCTTTTCTTTTCTTCTTTTCCGTTTCTGATATGGGGAAGGTTGGTTAGGCTCTTATTGTTGTCAGATGTATCTTATGATCGCTTTGGCTCCTTTCATTTTTTAGATTCCAAAGTTTCTGTTTGGTTGCCAAGGAGATCGATAATTATAGGTGTGATGGGAGTAGAGGAAGGAGGAAATTCGAACTTTTCGCTCCGTTTTTTCGTTTCATTTCGGTTTCTTGGTTTTTTCTCTAGCTGAGTTTTGATCCGTAAGAAGCCTTAGTTTCAATTCAGATTAGATACTCCGTCGGGTCCAAAAAGGGGACTTTAAGATTTTTTTTGAAAAGGAAAATTAAAGGTTCTTAGATGA</canonical>
            <polymorphic>TCTTCAAAATCATCTCACGTGACATGAAAGCCTCTTGACTAACCGAAGCTTCTTGGAAAACAAAGGAAAAGTGGTGATGGTTGGTTTTGGGTGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCCAATTTCCCATGGTGCGATTCTAATATGGGCAGAGGAGGACCAAAAGCGGCTCCCCTCTTCAGAATTTCAATATAAATCTCAATTCTGCTGCTTCATTCATGTGTTTGTGTTGGGCCGGGGCCCGCCATCGGATGCTGTCTTGACTCCTCTTCATTCAGTTTCATCAAAAAACTGCATTTGCAGAGACTAGAACAAGACACACACATTTCTTCCTTTTTTCCATTATTTTTATTATTATTATTGTGACTCAAGGAGGGGCTCTGGCTACTCTGGAATTCTTTTCAGATGTCTCCTTCCTAGATCTCAAGAATCTTATATTACAAACCCAACTGAATTTTTTTTCTCTGTCGTCTATATACTTCCAAAGAGCAAKTTTCTTTTTTTGCTCATTATCTCCAGCCTAATCTCCCATGTATTCATTCTGATTACGCAGTCTTCTTCCACACCCTTTCTTCTTCTTTTTTCTTCTTTTGGTCACTTACTTTTTTTTCACTACTTTCATATTTCTTCTTCTTCTTCTCGTTTCTTTTCTTTTCTTCTTTTCCGTTTCTGATATGGGGAAGGTTGGTTAGGCTCTTATTGTTGTCAGATGTATCTTATGATCGCTTTGGCTCCTTTCATTTTTTAGATTCCAAAGTTTCTGTTTGGTTGCCAAGGAGATCGATAATTATAGGTGTGATGGGAGTAGAGGAAGGAGGAAATTCGAACTTTTCGCTCCGTTTTTTCGTTTCATTTCGGTTTCTTGGTTTTTTCTCTAGCTGAGTTTTGATCCGTAAGAAGCCTTAGTTTCAATTCAGATTAGATACTCCGTCGGGTCCAAAAAGGGGACTTTAAGATTTTTTTTGAAAAGGAAAATTAAAGGTTCTTAGATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAACAAGACACACACATTTCTT</pcr_primer_p1>
		<pcr_primer_p2>AGACTGCGTAATCAGAATGAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGAACAAGACACACACATTTCTTCCTTTTTTCCATTATTTTTATTATTATTATTGTGACTCAAGGAGGGGCTCTGGCTACTCTGGAATTCTTTTCAGATGTCTCCTTCCTAGATCTCAAGAATCTTATATTACAAACCCAACTGAATTTTTTTTCTCTGTCGTCTATATACTTCCAAAGAGCAAGTTTCTTTTTTTGCTCATTATCTCCAGCCTAATCTCCCATGTATTCATTCTGATTACGCAGTCT</canonical_amplicon>
		<polymorphic_amplicon>AGAACAAGACACACACATTTCTTCCTTTTTTCCATTATTTTTATTATTATTATTGTGACTCAAGGAGGGGCTCTGGCTACTCTGGAATTCTTTTCAGATGTCTCCTTCCTAGATCTCAAGAATCTTATATTACAAACCCAACTGAATTTTTTTTCTCTGTCGTCTATATACTTCCAAAGAGCAAKTTTCTTTTTTTGCTCATTATCTCCAGCCTAATCTCCCATGTATTCATTCTGATTACGCAGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8699</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>63270</contig_pos>
        <strand></strand>
        <context>ATTATCTCCA[G/A]CCTAATCTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGTCTATATACTTCCAAAGAGCAAGTTTCTTTTTTTGCTCATTATCTCCA</left_flank>
        <right_flank>CCTAATCTCCCATGTATTCATTCTGATTACGCAGTCTTCTTCCACACCCT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGCCTCTTGACTAACCGAAGCTTCTTGGAAAACAAAGGAAAAGTGGTGATGGTTGGTTTTGGGTGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCCAATTTCCCATGGTGCGATTCTAATATGGGCAGAGGAGGACCAAAAGCGGCTCCCCTCTTCAGAATTTCAATATAAATCTCAATTCTGCTGCTTCATTCATGTGTTTGTGTTGGGCCGGGGCCCGCCATCGGATGCTGTCTTGACTCCTCTTCATTCAGTTTCATCAAAAAACTGCATTTGCAGAGACTAGAACAAGACACACACATTTCTTCCTTTTTTCCATTATTTTTATTATTATTATTGTGACTCAAGGAGGGGCTCTGGCTACTCTGGAATTCTTTTCAGATGTCTCCTTCCTAGATCTCAAGAATCTTATATTACAAACCCAACTGAATTTTTTTTCTCTGTCGTCTATATACTTCCAAAGAGCAAGTTTCTTTTTTTGCTCATTATCTCCAGCCTAATCTCCCATGTATTCATTCTGATTACGCAGTCTTCTTCCACACCCTTTCTTCTTCTTTTTTCTTCTTTTGGTCACTTACTTTTTTTTCACTACTTTCATATTTCTTCTTCTTCTTCTCGTTTCTTTTCTTTTCTTCTTTTCCGTTTCTGATATGGGGAAGGTTGGTTAGGCTCTTATTGTTGTCAGATGTATCTTATGATCGCTTTGGCTCCTTTCATTTTTTAGATTCCAAAGTTTCTGTTTGGTTGCCAAGGAGATCGATAATTATAGGTGTGATGGGAGTAGAGGAAGGAGGAAATTCGAACTTTTCGCTCCGTTTTTTCGTTTCATTTCGGTTTCTTGGTTTTTTCTCTAGCTGAGTTTTGATCCGTAAGAAGCCTTAGTTTCAATTCAGATTAGATACTCCGTCGGGTCCAAAAAGGGGACTTTAAGATTTTTTTTGAAAAGGAAAATTAAAGGTTCTTAGATGACACTTGGAATTTTATATTTGACTTGT</canonical>
            <polymorphic>AAAGCCTCTTGACTAACCGAAGCTTCTTGGAAAACAAAGGAAAAGTGGTGATGGTTGGTTTTGGGTGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCCAATTTCCCATGGTGCGATTCTAATATGGGCAGAGGAGGACCAAAAGCGGCTCCCCTCTTCAGAATTTCAATATAAATCTCAATTCTGCTGCTTCATTCATGTGTTTGTGTTGGGCCGGGGCCCGCCATCGGATGCTGTCTTGACTCCTCTTCATTCAGTTTCATCAAAAAACTGCATTTGCAGAGACTAGAACAAGACACACACATTTCTTCCTTTTTTCCATTATTTTTATTATTATTATTGTGACTCAAGGAGGGGCTCTGGCTACTCTGGAATTCTTTTCAGATGTCTCCTTCCTAGATCTCAAGAATCTTATATTACAAACCCAACTGAATTTTTTTTCTCTGTCGTCTATATACTTCCAAAGAGCAAGTTTCTTTTTTTGCTCATTATCTCCARCCTAATCTCCCATGTATTCATTCTGATTACGCAGTCTTCTTCCACACCCTTTCTTCTTCTTTTTTCTTCTTTTGGTCACTTACTTTTTTTTCACTACTTTCATATTTCTTCTTCTTCTTCTCGTTTCTTTTCTTTTCTTCTTTTCCGTTTCTGATATGGGGAAGGTTGGTTAGGCTCTTATTGTTGTCAGATGTATCTTATGATCGCTTTGGCTCCTTTCATTTTTTAGATTCCAAAGTTTCTGTTTGGTTGCCAAGGAGATCGATAATTATAGGTGTGATGGGAGTAGAGGAAGGAGGAAATTCGAACTTTTCGCTCCGTTTTTTCGTTTCATTTCGGTTTCTTGGTTTTTTCTCTAGCTGAGTTTTGATCCGTAAGAAGCCTTAGTTTCAATTCAGATTAGATACTCCGTCGGGTCCAAAAAGGGGACTTTAAGATTTTTTTTGAAAAGGAAAATTAAAGGTTCTTAGATGACACTTGGAATTTTATATTTGACTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>174 147 138 135 128 119 65 38 22 18 6 6 4</canonical_bands>
                <polymorphic_bands>309 147 138 128 119 65 38 22 18 6 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGTCGTCTATATACTTCCAAAG</pcr_primer_p1>
		<pcr_primer_p2>ATCTGACAACAATAAGAGCCTAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTGTCGTCTATATACTTCCAAAGAGCAAGTTTCTTTTTTTGCTCATTATCTCCAGCCTAATCTCCCATGTATTCATTCTGATTACGCAGTCTTCTTCCACACCCTTTCTTCTTCTTTTTTCTTCTTTTGGTCACTTACTTTTTTTTCACTACTTTCATATTTCTTCTTCTTCTTCTCGTTTCTTTTCTTTTCTTCTTTTCCGTTTCTGATATGGGGAAGGTTGGTTAGGCTCTTATTGTTGTCAGAT</canonical_amplicon>
		<polymorphic_amplicon>TCTGTCGTCTATATACTTCCAAAGAGCAAGTTTCTTTTTTTGCTCATTATCTCCARCCTAATCTCCCATGTATTCATTCTGATTACGCAGTCTTCTTCCACACCCTTTCTTCTTCTTTTTTCTTCTTTTGGTCACTTACTTTTTTTTCACTACTTTCATATTTCTTCTTCTTCTTCTCGTTTCTTTTCTTTTCTTCTTTTCCGTTTCTGATATGGGGAAGGTTGGTTAGGCTCTTATTGTTGTCAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8718</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>69567</contig_pos>
        <strand>+</strand>
        <context>GATTTTTAAA[A/T]CTTCTCCTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATCAGAGATATTGGAGACAACACTGAATAGTAAGATATTGATTTTTAAA</left_flank>
        <right_flank>CTTCTCCTCAAAAATTTTCTTCTTTCAGCTTCTTCGAGAATCTCGACAGA</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTAAATAAGATATTATAGAACTCGACAAGTACTACAAAATGATACTATTTAGAATACTGTATCTTGTCTATGAATCAAGCCAAAACCGTTTGATCTACGGTGTCACAAACATATGGAATTGTAACTTTGTTCATAGACAAGATACAGCAATCCAAATAGTATCATTTGTAGTACTCGTCGAGTTCTATCATATCTAATGTAATCGATCCAAAATATCAATTCTAAAAGAAACTATAACAGAGCCGGAGAGAGCTCGTTTTCGGCCAAGTCTGCCCCTATTAGATTGAACCTCCAACCTTCAAATTTTCAGCACGACGTTCACATGCTGACCCTCTACATCAAGGACATGCAGCACAAGTCCTTCCATGCAGATGCTGCAGAACACGTGGCAAAACTTTGGAAGGATCCAGTCATCAAGAGACTCTACGCTGAACGACGCGAGCGCAATATCAGAGATATTGGAGACAACACTGAATAGTAAGATATTGATTTTTAAAACTTCTCCTCAAAAATTTTCTTCTTTCAGCTTCTTCGAGAATCTCGACAGAATTGCCAAGCCAGACTACAGTCCAAACTCTATGGACACACTTCTCTTGCGAACGAAAACCACCGGAATTGTGGAGGTTCAATTCGAGATCAAGAAGGTCAAGTTCAGAGTGTTCGATGTGGGAGGTCAGCGATCGGAGCGAAAAAAGTGGATTCACTGCTTCGAAGACGTCAACGCCATCATTTTCATCGCGGCACTCTCCGAGTATAATGAAGTGCTTTTTGAAGATGAGACTACGGTAATTGAAAATGTTGAGATATTTCTGAAAAAATTATTTTTCAGAACCGAATGATCGAGTCGATGCGCCTTTTCGAATCAATCTGCAACTCGAGATGGTTCCATAACACCAACATTATTCTTTTCTTGAATAAGAAGGATTTGTTTGAAGATAAAATTAAGAAGGAAAATATTACAAAGGCATTCCCAGAGTACCGAGGTAAGTTGGATGGGG</canonical>
            <polymorphic>AATTAAATAAGATATTATAGAACTCGACAAGTACTACAAAATGATACTATTTAGAATACTGTATCTTGTCTATGAATCAAGCCAAAACCGTTTGATCTACGGTGTCACAAACATATGGAATTGTAACTTTGTTCATAGACAAGATACAGCAATCCAAATAGTATCATTTGTAGTACTCGTCGAGTTCTATCATATCTAATGTAATCGATCCAAAATATCAATTCTAAAAGAAACTATAACAGAGCCGGAGAGAGCTCGTTTTCGGCCAAGTCTGCCCCTATTAGATTGAACCTCCAACCTTCAAATTTTCAGCACGACGTTCACATGCTGACCCTCTACATCAAGGACATGCAGCACAAGTCCTTCCATGCAGATGCTGCAGAACACGTGGCAAAACTTTGGAAGGATCCAGTCATCAAGAGACTCTACGCTGAACGACGCGAGCGCAATATCAGAGATATTGGAGACAACACTGAATAGTAAGATATTGATTTTTAAAWCTTCTCCTCAAAAATTTTCTTCTTTCAGCTTCTTCGAGAATCTCGACAGAATTGCCAAGCCAGACTACAGTCCAAACTCTATGGACACACTTCTCTTGCGAACGAAAACCACCGGAATTGTGGAGGTTCAATTCGAGATCAAGAAGGTCAAGTTCAGAGTGTTCGATGTGGGAGGTCAGCGATCGGAGCGAAAAAAGTGGATTCACTGCTTCGAAGACGTCAACGCCATCATTTTCATCGCGGCACTCTCCGAGTATAATGAAGTGCTTTTTGAAGATGAGACTACGGTAATTGAAAATGTTGAGATATTTCTGAAAAAATTATTTTTCAGAACCGAATGATCGAGTCGATGCGCCTTTTCGAATCAATCTGCAACTCGAGATGGTTCCATAACACCAACATTATTCTTTTCTTGAATAAGAAGGATTTGTTTGAAGATAAAATTAAGAAGGAAAATATTACAAAGGCATTCCCAGAGTACCGAGGTAAGTTGGATGGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAAGAGACTCTACGCTGAAC</pcr_primer_p1>
		<pcr_primer_p2>AACACTCTGAACTTGACCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCAAGAGACTCTACGCTGAACGACGCGAGCGCAATATCAGAGATATTGGAGACAACACTGAATAGTAAGATATTGATTTTTAAAACTTCTCCTCAAAAATTTTCTTCTTTCAGCTTCTTCGAGAATCTCGACAGAATTGCCAAGCCAGACTACAGTCCAAACTCTATGGACACACTTCTCTTGCGAACGAAAACCACCGGAATTGTGGAGGTTCAATTCGAGATCAAGAAGGTCAAGTTCAGAGTGTT</canonical_amplicon>
		<polymorphic_amplicon>ATCAAGAGACTCTACGCTGAACGACGCGAGCGCAATATCAGAGATATTGGAGACAACACTGAATAGTAAGATATTGATTTTTAAAWCTTCTCCTCAAAAATTTTCTTCTTTCAGCTTCTTCGAGAATCTCGACAGAATTGCCAAGCCAGACTACAGTCCAAACTCTATGGACACACTTCTCTTGCGAACGAAAACCACCGGAATTGTGGAGGTTCAATTCGAGATCAAGAAGGTCAAGTTCAGAGTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8719</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>90212</contig_pos>
        <strand>+</strand>
        <context>CTTCTTGCTC[A/G]TTGGCCAAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGACCATACTCATTGTTGATTTGAGCAGCTATCGGAGATTCTTCTTGCTC</left_flank>
        <right_flank>TTGGCCAAGTCGTAAGCTGGACAATCAACTTTTGTGGGACGGAGAAGCTG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTGATTTCTAGTGATTCGTTTCAATTCACGGATGTGATCCATGATAGTGGTGCCGTTGAACACCTGATTCAACCAGCTAGGCTGTGGCATGTTATGGTCCAGCTGAAATTTATTTTTTTAGAAGGGAACTAGTTACTGTAAAACCTGTAATAGAAGGGCCTTTTGACAAGCCGAATTTTCTCAGCTCCTGTTGAAGATATAGAGAAGTTGTCAACTGATAAAATCACTTTTAATATTGTGATAAACAATTTTTCTGTTGACAACTTTTTGATATCTCTCACAGGAACAGAGATAATTGAGCTCAAACCAGACGGAATGTGGCTCTTCTATTGCAGGTTTCCCGGTAATACCAACAAAATACCTCTCTTTGAATATCATACAAATCATTGATATTCCAAAAGTCAATAGATTCCATTCCCGTTGTATTCTGAAGCCACTTGAACATTTGACCATACTCATTGTTGATTTGAGCAGCTATCGGAGATTCTTCTTGCTCGTTGGCCAAGTCGTAAGCTGGACAATCAACTTTTGTGGGACGGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATACGCAGTTTGTATGGGTGTAGGCTGCCAATATCGGAGATACGAAGACTCCCAAACACGATCATCCACTGGTGGAAATAGACCAGCAGACACCCCTTGAGCAGTTTCTATGGCTCTTTCCGAATCGGAAGATAGAATGAACACTTTGTTTTTGTTGAAGACGGGTAGTACTGTAGCTCCATATCGTTGTCGTAACCAGATGCCAAGTTCAACAGCTTGCCAAATT</canonical>
            <polymorphic>TTCTTGATTTCTAGTGATTCGTTTCAATTCACGGATGTGATCCATGATAGTGGTGCCGTTGAACACCTGATTCAACCAGCTAGGCTGTGGCATGTTATGGTCCAGCTGAAATTTATTTTTTTAGAAGGGAACTAGTTACTGTAAAACCTGTAATAGAAGGGCCTTTTGACAAGCCGAATTTTCTCAGCTCCTGTTGAAGATATAGAGAAGTTGTCAACTGATAAAATCACTTTTAATATTGTGATAAACAATTTTTCTGTTGACAACTTTTTGATATCTCTCACAGGAACAGAGATAATTGAGCTCAAACCAGACGGAATGTGGCTCTTCTATTGCAGGTTTCCCGGTAATACCAACAAAATACCTCTCTTTGAATATCATACAAATCATTGATATTCCAAAAGTCAATAGATTCCATTCCCGTTGTATTCTGAAGCCACTTGAACATTTGACCATACTCATTGTTGATTTGAGCAGCTATCGGAGATTCTTCTTGCTCRTTGGCCAAGTCGTAAGCTGGACAATCAACTTTTGTGGGACGGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATACGCAGTTTGTATGGGTGTAGGCTGCCAATATCGGAGATACGAAGACTCCCAAACACGATCATCCACTGGTGGAAATAGACCAGCAGACACCCCTTGAGCAGTTTCTATGGCTCTTTCCGAATCGGAAGATAGAATGAACACTTTGTTTTTGTTGAAGACGGGTAGTACTGTAGCTCCATATCGTTGTCGTAACCAGATGCCAAGTTCAACAGCTTGCCAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATACCAACAAAATACCTCTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TATTTCTCTTTTTCAGCTTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>215</pcr_amplicon_size>
		<canonical_amplicon>AATACCAACAAAATACCTCTCTTTGAATATCATACAAATCATTGATATTCCAAAAGTCAATAGATTCCATTCCCGTTGTATTCTGAAGCCACTTGAACATTTGACCATACTCATTGTTGATTTGAGCAGCTATCGGAGATTCTTCTTGCTCGTTGGCCAAGTCGTAAGCTGGACAATCAACTTTTGTGGGACGGAGAAGCTGAAAAAGAGAAATA</canonical_amplicon>
		<polymorphic_amplicon>AATACCAACAAAATACCTCTCTTTGAATATCATACAAATCATTGATATTCCAAAAGTCAATAGATTCCATTCCCGTTGTATTCTGAAGCCACTTGAACATTTGACCATACTCATTGTTGATTTGAGCAGCTATCGGAGATTCTTCTTGCTCRTTGGCCAAGTCGTAAGCTGGACAATCAACTTTTGTGGGACGGAGAAGCTGAAAAAGAGAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8720</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>90466</contig_pos>
        <strand>+</strand>
        <context>ggtatcTGAA[A/T]CTCACAGCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAA</left_flank>
        <right_flank>CTCACAGCATCTATAGTCCCATACGCAGTTTGTATGGGTGTAGGCTGCCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGTTGACAACTTTTTGATATCTCTCACAGGAACAGAGATAATTGAGCTCAAACCAGACGGAATGTGGCTCTTCTATTGCAGGTTTCCCGGTAATACCAACAAAATACCTCTCTTTGAATATCATACAAATCATTGATATTCCAAAAGTCAATAGATTCCATTCCCGTTGTATTCTGAAGCCACTTGAACATTTGACCATACTCATTGTTGATTTGAGCAGCTATCGGAGATTCTTCTTGCTCGTTGGCCAAGTCGTAAGCTGGACAATCAACTTTTGTGGGACGGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATACGCAGTTTGTATGGGTGTAGGCTGCCAATATCGGAGATACGAAGACTCCCAAACACGATCATCCACTGGTGGAAATAGACCAGCAGACACCCCTTGAGCAGTTTCTATGGCTCTTTCCGAATCGGAAGATAGAATGAACACTTTGTTTTTGTTGAAGACGGGTAGTACTGTAGCTCCATATCGTTGTCGTAACCAGATGCCAAGTTCAACAGCTTGCCAAATTCCTTTCTGAAAATTAAAAAAATCAACTCGTGACCCAAACAATCCCACTCACATTGGTCAACTGATCCCATCCACGTGGCCAGTAGGTCTCATTGTACCTATCCTTGGGATACGGTAGATCTCCTGGAGCTCGATCTCCGTGCCTCCAAATCGCTTGCATCATGATTAAATTGGCACTATAGACATAGGTGAACACAGAAGAAAGAAGAAGAATGCGAATCATGGCAAGGTTCACTGAAATGTATAAAAAAGGAT</canonical>
            <polymorphic>TTCTGTTGACAACTTTTTGATATCTCTCACAGGAACAGAGATAATTGAGCTCAAACCAGACGGAATGTGGCTCTTCTATTGCAGGTTTCCCGGTAATACCAACAAAATACCTCTCTTTGAATATCATACAAATCATTGATATTCCAAAAGTCAATAGATTCCATTCCCGTTGTATTCTGAAGCCACTTGAACATTTGACCATACTCATTGTTGATTTGAGCAGCTATCGGAGATTCTTCTTGCTCGTTGGCCAAGTCGTAAGCTGGACAATCAACTTTTGTGGGACGGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAAWCTCACAGCATCTATAGTCCCATACGCAGTTTGTATGGGTGTAGGCTGCCAATATCGGAGATACGAAGACTCCCAAACACGATCATCCACTGGTGGAAATAGACCAGCAGACACCCCTTGAGCAGTTTCTATGGCTCTTTCCGAATCGGAAGATAGAATGAACACTTTGTTTTTGTTGAAGACGGGTAGTACTGTAGCTCCATATCGTTGTCGTAACCAGATGCCAAGTTCAACAGCTTGCCAAATTCCTTTCTGAAAATTAAAAAAATCAACTCGTGACCCAAACAATCCCACTCACATTGGTCAACTGATCCCATCCACGTGGCCAGTAGGTCTCATTGTACCTATCCTTGGGATACGGTAGATCTCCTGGAGCTCGATCTCCGTGCCTCCAAATCGCTTGCATCATGATTAAATTGGCACTATAGACATAGGTGAACACAGAAGAAAGAAGAAGAATGCGAATCATGGCAAGGTTCACTGAAATGTATAAAAAAGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>320 265 157 75 75 70 38</canonical_bands>
                <polymorphic_bands>335 320 157 75 75 38</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>320 265 157 145 75 38</canonical_bands>
                <polymorphic_bands>410 320 157 75 38</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAGCTGAAAAAGAGAAATAGAT</pcr_primer_p1>
		<pcr_primer_p2>GTTTGGGAGTCTTCGTATCTC</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>AGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATACGCAGTTTGTATGGGTGTAGGCTGCCAATATCGGAGATACGAAGACTCCCAAAC</canonical_amplicon>
		<polymorphic_amplicon>AGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAAWCTCACAGCATCTATAGTCCCATACGCAGTTTGTATGGGTGTAGGCTGCCAATATCGGAGATACGAAGACTCCCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8721</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>90496</contig_pos>
        <strand>+</strand>
        <context>CATACGCAGT[C/T]TGTATGGGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATACGCAGT</left_flank>
        <right_flank>TGTATGGGTGTAGGCTGCCAATATCGGAGATACGAAGACTCCCAAACACG</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGAACAGAGATAATTGAGCTCAAACCAGACGGAATGTGGCTCTTCTATTGCAGGTTTCCCGGTAATACCAACAAAATACCTCTCTTTGAATATCATACAAATCATTGATATTCCAAAAGTCAATAGATTCCATTCCCGTTGTATTCTGAAGCCACTTGAACATTTGACCATACTCATTGTTGATTTGAGCAGCTATCGGAGATTCTTCTTGCTCGTTGGCCAAGTCGTAAGCTGGACAATCAACTTTTGTGGGACGGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATACGCAGTTTGTATGGGTGTAGGCTGCCAATATCGGAGATACGAAGACTCCCAAACACGATCATCCACTGGTGGAAATAGACCAGCAGACACCCCTTGAGCAGTTTCTATGGCTCTTTCCGAATCGGAAGATAGAATGAACACTTTGTTTTTGTTGAAGACGGGTAGTACTGTAGCTCCATATCGTTGTCGTAACCAGATGCCAAGTTCAACAGCTTGCCAAATTCCTTTCTGAAAATTAAAAAAATCAACTCGTGACCCAAACAATCCCACTCACATTGGTCAACTGATCCCATCCACGTGGCCAGTAGGTCTCATTGTACCTATCCTTGGGATACGGTAGATCTCCTGGAGCTCGATCTCCGTGCCTCCAAATCGCTTGCATCATGATTAAATTGGCACTATAGACATAGGTGAACACAGAAGAAAGAAGAAGAATGCGAATCATGGCAAGGTTCACTGAAATGTATAAAAAAGGATCAAATAGGAAAGTGTGAAAAAAAAGAGAAA</canonical>
            <polymorphic>AGGAACAGAGATAATTGAGCTCAAACCAGACGGAATGTGGCTCTTCTATTGCAGGTTTCCCGGTAATACCAACAAAATACCTCTCTTTGAATATCATACAAATCATTGATATTCCAAAAGTCAATAGATTCCATTCCCGTTGTATTCTGAAGCCACTTGAACATTTGACCATACTCATTGTTGATTTGAGCAGCTATCGGAGATTCTTCTTGCTCGTTGGCCAAGTCGTAAGCTGGACAATCAACTTTTGTGGGACGGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATACGCAGTYTGTATGGGTGTAGGCTGCCAATATCGGAGATACGAAGACTCCCAAACACGATCATCCACTGGTGGAAATAGACCAGCAGACACCCCTTGAGCAGTTTCTATGGCTCTTTCCGAATCGGAAGATAGAATGAACACTTTGTTTTTGTTGAAGACGGGTAGTACTGTAGCTCCATATCGTTGTCGTAACCAGATGCCAAGTTCAACAGCTTGCCAAATTCCTTTCTGAAAATTAAAAAAATCAACTCGTGACCCAAACAATCCCACTCACATTGGTCAACTGATCCCATCCACGTGGCCAGTAGGTCTCATTGTACCTATCCTTGGGATACGGTAGATCTCCTGGAGCTCGATCTCCGTGCCTCCAAATCGCTTGCATCATGATTAAATTGGCACTATAGACATAGGTGAACACAGAAGAAAGAAGAAGAATGCGAATCATGGCAAGGTTCACTGAAATGTATAAAAAAGGATCAAATAGGAAAGTGTGAAAAAAAAGAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGAAGCTGAAAAAGAGAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTCTGCTGGTCTATTTCCAC</pcr_primer_p2>
		<pcr_amplicon_size>325</pcr_amplicon_size>
		<canonical_amplicon>GGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATACGCAGTTTGTATGGGTGTAGGCTGCCAATATCGGAGATACGAAGACTCCCAAACACGATCATCCACTGGTGGAAATAGACCAGCAGAC</canonical_amplicon>
		<polymorphic_amplicon>GGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATACGCAGTYTGTATGGGTGTAGGCTGCCAATATCGGAGATACGAAGACTCCCAAACACGATCATCCACTGGTGGAAATAGACCAGCAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8722</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>90636</contig_pos>
        <strand>+</strand>
        <context>AACACTTTGT[C/T]TTTGTTGAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCAGTTTCTATGGCTCTTTCCGAATCGGAAGATAGAATGAACACTTTGT</left_flank>
        <right_flank>TTTGTTGAAGACGGGTAGTACTGTAGCTCCATATCGTTGTCGTAACCAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTATTCTGAAGCCACTTGAACATTTGACCATACTCATTGTTGATTTGAGCAGCTATCGGAGATTCTTCTTGCTCGTTGGCCAAGTCGTAAGCTGGACAATCAACTTTTGTGGGACGGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATACGCAGTTTGTATGGGTGTAGGCTGCCAATATCGGAGATACGAAGACTCCCAAACACGATCATCCACTGGTGGAAATAGACCAGCAGACACCCCTTGAGCAGTTTCTATGGCTCTTTCCGAATCGGAAGATAGAATGAACACTTTGTTTTTGTTGAAGACGGGTAGTACTGTAGCTCCATATCGTTGTCGTAACCAGATGCCAAGTTCAACAGCTTGCCAAATTCCTTTCTGAAAATTAAAAAAATCAACTCGTGACCCAAACAATCCCACTCACATTGGTCAACTGATCCCATCCACGTGGCCAGTAGGTCTCATTGTACCTATCCTTGGGATACGGTAGATCTCCTGGAGCTCGATCTCCGTGCCTCCAAATCGCTTGCATCATGATTAAATTGGCACTATAGACATAGGTGAACACAGAAGAAAGAAGAAGAATGCGAATCATGGCAAGGTTCACTGAAATGTATAAAAAAGGATCAAATAGGAAAGTGTGAAAAAAAAGAGAAAGGGAGGCAGATAGATTTAAAAGTTTATGTTCGAAAGTTTTGATGTACTCGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAAAGGAAATCTAGAACACCGTAAAACCTGTAACAGAAGGACCTTCATGATGTCA</canonical>
            <polymorphic>TGTATTCTGAAGCCACTTGAACATTTGACCATACTCATTGTTGATTTGAGCAGCTATCGGAGATTCTTCTTGCTCGTTGGCCAAGTCGTAAGCTGGACAATCAACTTTTGTGGGACGGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATACGCAGTTTGTATGGGTGTAGGCTGCCAATATCGGAGATACGAAGACTCCCAAACACGATCATCCACTGGTGGAAATAGACCAGCAGACACCCCTTGAGCAGTTTCTATGGCTCTTTCCGAATCGGAAGATAGAATGAACACTTTGTYTTTGTTGAAGACGGGTAGTACTGTAGCTCCATATCGTTGTCGTAACCAGATGCCAAGTTCAACAGCTTGCCAAATTCCTTTCTGAAAATTAAAAAAATCAACTCGTGACCCAAACAATCCCACTCACATTGGTCAACTGATCCCATCCACGTGGCCAGTAGGTCTCATTGTACCTATCCTTGGGATACGGTAGATCTCCTGGAGCTCGATCTCCGTGCCTCCAAATCGCTTGCATCATGATTAAATTGGCACTATAGACATAGGTGAACACAGAAGAAAGAAGAAGAATGCGAATCATGGCAAGGTTCACTGAAATGTATAAAAAAGGATCAAATAGGAAAGTGTGAAAAAAAAGAGAAAGGGAGGCAGATAGATTTAAAAGTTTATGTTCGAAAGTTTTGATGTACTCGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAAAGGAAATCTAGAACACCGTAAAACCTGTAACAGAAGGACCTTCATGATGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCCCTTGAGCAGTTTCTAT</pcr_primer_p1>
		<pcr_primer_p2>TATCCCAAGGATAGGTACAATG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACCCCTTGAGCAGTTTCTATGGCTCTTTCCGAATCGGAAGATAGAATGAACACTTTGTTTTTGTTGAAGACGGGTAGTACTGTAGCTCCATATCGTTGTCGTAACCAGATGCCAAGTTCAACAGCTTGCCAAATTCCTTTCTGAAAATTAAAAAAATCAACTCGTGACCCAAACAATCCCACTCACATTGGTCAACTGATCCCATCCACGTGGCCAGTAGGTCTCATTGTACCTATCCTTGGGATA</canonical_amplicon>
		<polymorphic_amplicon>ACCCCTTGAGCAGTTTCTATGGCTCTTTCCGAATCGGAAGATAGAATGAACACTTTGTYTTTGTTGAAGACGGGTAGTACTGTAGCTCCATATCGTTGTCGTAACCAGATGCCAAGTTCAACAGCTTGCCAAATTCCTTTCTGAAAATTAAAAAAATCAACTCGTGACCCAAACAATCCCACTCACATTGGTCAACTGATCCCATCCACGTGGCCAGTAGGTCTCATTGTACCTATCCTTGGGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8723</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>90722</contig_pos>
        <strand>+</strand>
        <context>TCCTTTCTGA[A/T]AATTAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTGTCGTAACCAGATGCCAAGTTCAACAGCTTGCCAAATTCCTTTCTGA</left_flank>
        <right_flank>AATTAAAAAAATCAACTCGTGACCCAAACAATCCCACTCACATTGGTCAA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTAAGCTGGACAATCAACTTTTGTGGGACGGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATACGCAGTTTGTATGGGTGTAGGCTGCCAATATCGGAGATACGAAGACTCCCAAACACGATCATCCACTGGTGGAAATAGACCAGCAGACACCCCTTGAGCAGTTTCTATGGCTCTTTCCGAATCGGAAGATAGAATGAACACTTTGTTTTTGTTGAAGACGGGTAGTACTGTAGCTCCATATCGTTGTCGTAACCAGATGCCAAGTTCAACAGCTTGCCAAATTCCTTTCTGAAAATTAAAAAAATCAACTCGTGACCCAAACAATCCCACTCACATTGGTCAACTGATCCCATCCACGTGGCCAGTAGGTCTCATTGTACCTATCCTTGGGATACGGTAGATCTCCTGGAGCTCGATCTCCGTGCCTCCAAATCGCTTGCATCATGATTAAATTGGCACTATAGACATAGGTGAACACAGAAGAAAGAAGAAGAATGCGAATCATGGCAAGGTTCACTGAAATGTATAAAAAAGGATCAAATAGGAAAGTGTGAAAAAAAAGAGAAAGGGAGGCAGATAGATTTAAAAGTTTATGTTCGAAAGTTTTGATGTACTCGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAAAGGAAATCTAGAACACCGTAAAACCTGTAACAGAAGGACCTTCATGATGTCAAGTTTGCCCTCAAGTATCTCGGATCCTGTACAAGATATCAAAAATACGTCAACTGATAAAATTTTCATGAAAGTTTGATAAAATAT</canonical>
            <polymorphic>CGTAAGCTGGACAATCAACTTTTGTGGGACGGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATACGCAGTTTGTATGGGTGTAGGCTGCCAATATCGGAGATACGAAGACTCCCAAACACGATCATCCACTGGTGGAAATAGACCAGCAGACACCCCTTGAGCAGTTTCTATGGCTCTTTCCGAATCGGAAGATAGAATGAACACTTTGTTTTTGTTGAAGACGGGTAGTACTGTAGCTCCATATCGTTGTCGTAACCAGATGCCAAGTTCAACAGCTTGCCAAATTCCTTTCTGAWAATTAAAAAAATCAACTCGTGACCCAAACAATCCCACTCACATTGGTCAACTGATCCCATCCACGTGGCCAGTAGGTCTCATTGTACCTATCCTTGGGATACGGTAGATCTCCTGGAGCTCGATCTCCGTGCCTCCAAATCGCTTGCATCATGATTAAATTGGCACTATAGACATAGGTGAACACAGAAGAAAGAAGAAGAATGCGAATCATGGCAAGGTTCACTGAAATGTATAAAAAAGGATCAAATAGGAAAGTGTGAAAAAAAAGAGAAAGGGAGGCAGATAGATTTAAAAGTTTATGTTCGAAAGTTTTGATGTACTCGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAAAGGAAATCTAGAACACCGTAAAACCTGTAACAGAAGGACCTTCATGATGTCAAGTTTGCCCTCAAGTATCTCGGATCCTGTACAAGATATCAAAAATACGTCAACTGATAAAATTTTCATGAAAGTTTGATAAAATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACTGTAGCTCCATATCGTTGT</pcr_primer_p1>
		<pcr_primer_p2>TGTCTATAGTGCCAATTTAATCAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GTACTGTAGCTCCATATCGTTGTCGTAACCAGATGCCAAGTTCAACAGCTTGCCAAATTCCTTTCTGAAAATTAAAAAAATCAACTCGTGACCCAAACAATCCCACTCACATTGGTCAACTGATCCCATCCACGTGGCCAGTAGGTCTCATTGTACCTATCCTTGGGATACGGTAGATCTCCTGGAGCTCGATCTCCGTGCCTCCAAATCGCTTGCATCATGATTAAATTGGCACTATAGACA</canonical_amplicon>
		<polymorphic_amplicon>GTACTGTAGCTCCATATCGTTGTCGTAACCAGATGCCAAGTTCAACAGCTTGCCAAATTCCTTTCTGAWAATTAAAAAAATCAACTCGTGACCCAAACAATCCCACTCACATTGGTCAACTGATCCCATCCACGTGGCCAGTAGGTCTCATTGTACCTATCCTTGGGATACGGTAGATCTCCTGGAGCTCGATCTCCGTGCCTCCAAATCGCTTGCATCATGATTAAATTGGCACTATAGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8724</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>92356</contig_pos>
        <strand>+</strand>
        <context>TCAAWGGGAA[A/G]AAGAGGAGGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATGGTTGAGTAAGTGCCGCCAGTTCAAGGATCTCAAGTTCAATGGGAA</left_flank>
        <right_flank>AAGAGGAGGCTCCAATTCCGGTTATCACCAATCAACCGTTGCCAACGCCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATAAATAAATAAATAAATAAACAATTGCTGATGTACAGTATCCTTTTTAAATTCATAATATTTACAGCACATCAGAATGTCCACCGATCCGTCTGGTCCAACGTCTCCCGAACCAAAGAGAACTAAAATCGAGGAAACTGAGCAAGAAGAGAAGAATGTGGAAATGGAGACAGCAACAACTACAGAAGTCGCCGAAGAGCCACCAGTCCCATTAAGGAAAGAAGACGTGGAACCAAAGCCGAGCACTGGATCAGAGACGGATCCAAGCTCGGCACGCACCTCGATTCTCCCTTCCAGAACATCAGATACAGTCGGCGAAGAAGTTTCGATCAGTATTAATATCAGTGAAGCCAAAGATGAACCGACCAAAGATGAACCGGATGGTGTTTCTCGAAGTGCCACGACAATCACTGAACACAGTTTGGAGAATTCGGATGAGGAGCGAACAATGGTTGAGTAAGTGCCGCCAGTTCAAGGATCTCAAGTTCAATGGGAAAAAGAGGAGGCTCCAATTCCGGTTATCACCAATCAACCGTTGCCAACGCCAGCTCGTAATCCAGATCGCAGAGAGAGTGCAGCGGGAGACGGATGTTCGAATTGTTGTATTCGAACATCTCAATAACTTATTTCAATTATCATTTCTTGTAATTATTTTGTGTCTCTTAATTTGTTTATCAAGTATTCTAGAAGTATTTTTGAATGAATAATAAGGACGTTTTGGAATTGCGTTTTGAAGATTTCAGGTTCCCCTAAGAGGTAGTACAGGTACCAATAAATAGAAGGGCCCTCTCCACTGTCAGATTCGAGCTCAATTATCTCGGCTCCTCTAAAAGATATCAAAATTTAGTCAATTGATAAAATATTGTTCGTAAAATTATCAACATTTTATCAGTTGGCACATTTTTGATAGCTTGTATAGGAACCGAGATAATGGAGCTCAAAGGGCACGTGTAGGGTGGGTTCCTATTAGAAAGGAGGGGAACGTTTGAGCTTAATT</canonical>
            <polymorphic>GAAATAAATAAATAAATAAATAAACAATTGCTGATGTACAGTATCCTTTTTAAATTCATAATATTTACAGCACATCAGAATGTCCACCGATCCGTCTGGTCCAACGTCTCCCGAACCAAAGAGAACTAAAATCGAGGAAACTGAGCAAGAAGAGAAGAATGTGGAAATGGAGACAGCAACAACTACAGAAGTCGCCGAAGAGCCACCAGTCCCATTAAGGAAAGAAGACGTGGAACCAAAGCCGAGCACTGGATCAGAGACGGATCCAAGCTCGGCACGCACCTCGATTCTCCCTTCCAGAACATCAGATACAGTCGGCGAAGAAGTTTCGATCAGTATTAATATCAGTGAAGCCAAAGATGAACCGACCAAAGATGAACCGGATGGTGTTTCTCGAAGTGCCACGACAATCACTGAACACAGTTTGGAGAATTCGGATGAGGAGCGAACAATGGTTGAGTAAGTGCCGCCAGTTCAAGGATCTCAAGTTCAATGGGAARAAGAGGAGGCTCCAATTCCGGTTATCACCAATCAACCGTTGCCAACGCCAGCTCGTAATCCAGATCGCAGAGAGAGTGCAGCGGGAGACGGATGTTCGAATTGTTGTATTCGAACATCTCAATAACTTATTTCAATTATCATTTCTTGTAATTATTTTGTGTCTCTTAATTTGTTTATCAAGTATTCTAGAAGTATTTTTGAATGAATAATAAGGACGTTTTGGAATTGCGTTTTGAAGATTTCAGGTTCCCCTAAGAGGTAGTACAGGTACCAATAAATAGAAGGGCCCTCTCCACTGTCAGATTCGAGCTCAATTATCTCGGCTCCTCTAAAAGATATCAAAATTTAGTCAATTGATAAAATATTGTTCGTAAAATTATCAACATTTTATCAGTTGGCACATTTTTGATAGCTTGTATAGGAACCGAGATAATGGAGCTCAAAGGGCACGTGTAGGGTGGGTTCCTATTAGAAAGGAGGGGAACGTTTGAGCTTAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTAATATCAGTGAAGCCAAAGA</pcr_primer_p1>
		<pcr_primer_p2>CTCTCTGCGATCTGGATTAC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>ATTAATATCAGTGAAGCCAAAGATGAACCGACCAAAGATGAACCGGATGGTGTTTCTCGAAGTGCCACGACAATCACTGAACACAGTTTGGAGAATTCGGATGAGGAGCGAACAATGGTTGAGTAAGTGCCGCCAGTTCAAGGATCTCAAGTTCAATGGGAAAAAGAGGAGGCTCCAATTCCGGTTATCACCAATCAACCGTTGCCAACGCCAGCTCGTAATCCAGATCGCAGAGAG</canonical_amplicon>
		<polymorphic_amplicon>ATTAATATCAGTGAAGCCAAAGATGAACCGACCAAAGATGAACCGGATGGTGTTTCTCGAAGTGCCACGACAATCACTGAACACAGTTTGGAGAATTCGGATGAGGAGCGAACAATGGTTGAGTAAGTGCCGCCAGTTCAAGGATCTCAAGTTCAATGGGAARAAGAGGAGGCTCCAATTCCGGTTATCACCAATCAACCGTTGCCAACGCCAGCTCGTAATCCAGATCGCAGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8725</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>92350</contig_pos>
        <strand>+</strand>
        <context>TCAAGTTCAA[A/T]GGGAARAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGCGAACAATGGTTGAGTAAGTGCCGCCAGTTCAAGGATCTCAAGTTCAA</left_flank>
        <right_flank>GGGAAAAAGAGGAGGCTCCAATTCCGGTTATCACCAATCAACCGTTGCCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGTTGAAATAAATAAATAAATAAATAAACAATTGCTGATGTACAGTATCCTTTTTAAATTCATAATATTTACAGCACATCAGAATGTCCACCGATCCGTCTGGTCCAACGTCTCCCGAACCAAAGAGAACTAAAATCGAGGAAACTGAGCAAGAAGAGAAGAATGTGGAAATGGAGACAGCAACAACTACAGAAGTCGCCGAAGAGCCACCAGTCCCATTAAGGAAAGAAGACGTGGAACCAAAGCCGAGCACTGGATCAGAGACGGATCCAAGCTCGGCACGCACCTCGATTCTCCCTTCCAGAACATCAGATACAGTCGGCGAAGAAGTTTCGATCAGTATTAATATCAGTGAAGCCAAAGATGAACCGACCAAAGATGAACCGGATGGTGTTTCTCGAAGTGCCACGACAATCACTGAACACAGTTTGGAGAATTCGGATGAGGAGCGAACAATGGTTGAGTAAGTGCCGCCAGTTCAAGGATCTCAAGTTCAATGGGAAAAAGAGGAGGCTCCAATTCCGGTTATCACCAATCAACCGTTGCCAACGCCAGCTCGTAATCCAGATCGCAGAGAGAGTGCAGCGGGAGACGGATGTTCGAATTGTTGTATTCGAACATCTCAATAACTTATTTCAATTATCATTTCTTGTAATTATTTTGTGTCTCTTAATTTGTTTATCAAGTATTCTAGAAGTATTTTTGAATGAATAATAAGGACGTTTTGGAATTGCGTTTTGAAGATTTCAGGTTCCCCTAAGAGGTAGTACAGGTACCAATAAATAGAAGGGCCCTCTCCACTGTCAGATTCGAGCTCAATTATCTCGGCTCCTCTAAAAGATATCAAAATTTAGTCAATTGATAAAATATTGTTCGTAAAATTATCAACATTTTATCAGTTGGCACATTTTTGATAGCTTGTATAGGAACCGAGATAATGGAGCTCAAAGGGCACGTGTAGGGTGGGTTCCTATTAGAAAGGAGGGGAACGTTTGAGC</canonical>
            <polymorphic>TTCGTTGAAATAAATAAATAAATAAATAAACAATTGCTGATGTACAGTATCCTTTTTAAATTCATAATATTTACAGCACATCAGAATGTCCACCGATCCGTCTGGTCCAACGTCTCCCGAACCAAAGAGAACTAAAATCGAGGAAACTGAGCAAGAAGAGAAGAATGTGGAAATGGAGACAGCAACAACTACAGAAGTCGCCGAAGAGCCACCAGTCCCATTAAGGAAAGAAGACGTGGAACCAAAGCCGAGCACTGGATCAGAGACGGATCCAAGCTCGGCACGCACCTCGATTCTCCCTTCCAGAACATCAGATACAGTCGGCGAAGAAGTTTCGATCAGTATTAATATCAGTGAAGCCAAAGATGAACCGACCAAAGATGAACCGGATGGTGTTTCTCGAAGTGCCACGACAATCACTGAACACAGTTTGGAGAATTCGGATGAGGAGCGAACAATGGTTGAGTAAGTGCCGCCAGTTCAAGGATCTCAAGTTCAAWGGGAAAAAGAGGAGGCTCCAATTCCGGTTATCACCAATCAACCGTTGCCAACGCCAGCTCGTAATCCAGATCGCAGAGAGAGTGCAGCGGGAGACGGATGTTCGAATTGTTGTATTCGAACATCTCAATAACTTATTTCAATTATCATTTCTTGTAATTATTTTGTGTCTCTTAATTTGTTTATCAAGTATTCTAGAAGTATTTTTGAATGAATAATAAGGACGTTTTGGAATTGCGTTTTGAAGATTTCAGGTTCCCCTAAGAGGTAGTACAGGTACCAATAAATAGAAGGGCCCTCTCCACTGTCAGATTCGAGCTCAATTATCTCGGCTCCTCTAAAAGATATCAAAATTTAGTCAATTGATAAAATATTGTTCGTAAAATTATCAACATTTTATCAGTTGGCACATTTTTGATAGCTTGTATAGGAACCGAGATAATGGAGCTCAAAGGGCACGTGTAGGGTGGGTTCCTATTAGAAAGGAGGGGAACGTTTGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTAATATCAGTGAAGCCAAAGA</pcr_primer_p1>
		<pcr_primer_p2>CTCTCTGCGATCTGGATTAC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>ATTAATATCAGTGAAGCCAAAGATGAACCGACCAAAGATGAACCGGATGGTGTTTCTCGAAGTGCCACGACAATCACTGAACACAGTTTGGAGAATTCGGATGAGGAGCGAACAATGGTTGAGTAAGTGCCGCCAGTTCAAGGATCTCAAGTTCAATGGGAAAAAGAGGAGGCTCCAATTCCGGTTATCACCAATCAACCGTTGCCAACGCCAGCTCGTAATCCAGATCGCAGAGAG</canonical_amplicon>
		<polymorphic_amplicon>ATTAATATCAGTGAAGCCAAAGATGAACCGACCAAAGATGAACCGGATGGTGTTTCTCGAAGTGCCACGACAATCACTGAACACAGTTTGGAGAATTCGGATGAGGAGCGAACAATGGTTGAGTAAGTGCCGCCAGTTCAAGGATCTCAAGTTCAAWGGGAAAAAGAGGAGGCTCCAATTCCGGTTATCACCAATCAACCGTTGCCAACGCCAGCTCGTAATCCAGATCGCAGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8726</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>92320</contig_pos>
        <strand>+</strand>
        <context>GGTTGAGYAA[G/T]TGCCGCCAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTGAACACAGTTTGGAGAATTCGGATGAGGAGCGAACAATGGTTGAGTAA</left_flank>
        <right_flank>TGCCGCCAGTTCAAGGATCTCAAGTTCAATGGGAAAAAGAGGAGGCTCCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACATTTCACGTGTTAGTATTTTTCTCCCCTTCGTTGAAATAAATAAATAAATAAATAAACAATTGCTGATGTACAGTATCCTTTTTAAATTCATAATATTTACAGCACATCAGAATGTCCACCGATCCGTCTGGTCCAACGTCTCCCGAACCAAAGAGAACTAAAATCGAGGAAACTGAGCAAGAAGAGAAGAATGTGGAAATGGAGACAGCAACAACTACAGAAGTCGCCGAAGAGCCACCAGTCCCATTAAGGAAAGAAGACGTGGAACCAAAGCCGAGCACTGGATCAGAGACGGATCCAAGCTCGGCACGCACCTCGATTCTCCCTTCCAGAACATCAGATACAGTCGGCGAAGAAGTTTCGATCAGTATTAATATCAGTGAAGCCAAAGATGAACCGACCAAAGATGAACCGGATGGTGTTTCTCGAAGTGCCACGACAATCACTGAACACAGTTTGGAGAATTCGGATGAGGAGCGAACAATGGTTGAGTAAGTGCCGCCAGTTCAAGGATCTCAAGTTCAATGGGAAAAAGAGGAGGCTCCAATTCCGGTTATCACCAATCAACCGTTGCCAACGCCAGCTCGTAATCCAGATCGCAGAGAGAGTGCAGCGGGAGACGGATGTTCGAATTGTTGTATTCGAACATCTCAATAACTTATTTCAATTATCATTTCTTGTAATTATTTTGTGTCTCTTAATTTGTTTATCAAGTATTCTAGAAGTATTTTTGAATGAATAATAAGGACGTTTTGGAATTGCGTTTTGAAGATTTCAGGTTCCCCTAAGAGGTAGTACAGGTACCAATAAATAGAAGGGCCCTCTCCACTGTCAGATTCGAGCTCAATTATCTCGGCTCCTCTAAAAGATATCAAAATTTAGTCAATTGATAAAATATTGTTCGTAAAATTATCAACATTTTATCAGTTGGCACATTTTTGATAGCTTGTATAGGAACCGAGATAATGGAGCTCAAAGGGCACGTGTAGGGTGGGT</canonical>
            <polymorphic>GACATTTCACGTGTTAGTATTTTTCTCCCCTTCGTTGAAATAAATAAATAAATAAATAAACAATTGCTGATGTACAGTATCCTTTTTAAATTCATAATATTTACAGCACATCAGAATGTCCACCGATCCGTCTGGTCCAACGTCTCCCGAACCAAAGAGAACTAAAATCGAGGAAACTGAGCAAGAAGAGAAGAATGTGGAAATGGAGACAGCAACAACTACAGAAGTCGCCGAAGAGCCACCAGTCCCATTAAGGAAAGAAGACGTGGAACCAAAGCCGAGCACTGGATCAGAGACGGATCCAAGCTCGGCACGCACCTCGATTCTCCCTTCCAGAACATCAGATACAGTCGGCGAAGAAGTTTCGATCAGTATTAATATCAGTGAAGCCAAAGATGAACCGACCAAAGATGAACCGGATGGTGTTTCTCGAAGTGCCACGACAATCACTGAACACAGTTTGGAGAATTCGGATGAGGAGCGAACAATGGTTGAGTAAKTGCCGCCAGTTCAAGGATCTCAAGTTCAATGGGAAAAAGAGGAGGCTCCAATTCCGGTTATCACCAATCAACCGTTGCCAACGCCAGCTCGTAATCCAGATCGCAGAGAGAGTGCAGCGGGAGACGGATGTTCGAATTGTTGTATTCGAACATCTCAATAACTTATTTCAATTATCATTTCTTGTAATTATTTTGTGTCTCTTAATTTGTTTATCAAGTATTCTAGAAGTATTTTTGAATGAATAATAAGGACGTTTTGGAATTGCGTTTTGAAGATTTCAGGTTCCCCTAAGAGGTAGTACAGGTACCAATAAATAGAAGGGCCCTCTCCACTGTCAGATTCGAGCTCAATTATCTCGGCTCCTCTAAAAGATATCAAAATTTAGTCAATTGATAAAATATTGTTCGTAAAATTATCAACATTTTATCAGTTGGCACATTTTTGATAGCTTGTATAGGAACCGAGATAATGGAGCTCAAAGGGCACGTGTAGGGTGGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>135 105 95 83 77 69 61 51 49 46 42 39 29 27 16 14 12 9 9 7 7 4 4 4 3 3</canonical_bands>
                <polymorphic_bands>135 107 105 95 83 77 69 51 49 42 39 29 27 16 14 12 9 9 7 7 4 4 4 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTAATATCAGTGAAGCCAAAGA</pcr_primer_p1>
		<pcr_primer_p2>CTCTCTGCGATCTGGATTAC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>ATTAATATCAGTGAAGCCAAAGATGAACCGACCAAAGATGAACCGGATGGTGTTTCTCGAAGTGCCACGACAATCACTGAACACAGTTTGGAGAATTCGGATGAGGAGCGAACAATGGTTGAGTAAGTGCCGCCAGTTCAAGGATCTCAAGTTCAATGGGAAAAAGAGGAGGCTCCAATTCCGGTTATCACCAATCAACCGTTGCCAACGCCAGCTCGTAATCCAGATCGCAGAGAG</canonical_amplicon>
		<polymorphic_amplicon>ATTAATATCAGTGAAGCCAAAGATGAACCGACCAAAGATGAACCGGATGGTGTTTCTCGAAGTGCCACGACAATCACTGAACACAGTTTGGAGAATTCGGATGAGGAGCGAACAATGGTTGAGTAAKTGCCGCCAGTTCAAGGATCTCAAGTTCAATGGGAAAAAGAGGAGGCTCCAATTCCGGTTATCACCAATCAACCGTTGCCAACGCCAGCTCGTAATCCAGATCGCAGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8727</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>92317</contig_pos>
        <strand>+</strand>
        <context>AATGGTTGAG[C/T]AAKTGCCGCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCACTGAACACAGTTTGGAGAATTCGGATGAGGAGCGAACAATGGTTGAG</left_flank>
        <right_flank>AAGTGCCGCCAGTTCAAGGATCTCAAGTTCAATGGGAAAAAGAGGAGGCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGACATTTCACGTGTTAGTATTTTTCTCCCCTTCGTTGAAATAAATAAATAAATAAATAAACAATTGCTGATGTACAGTATCCTTTTTAAATTCATAATATTTACAGCACATCAGAATGTCCACCGATCCGTCTGGTCCAACGTCTCCCGAACCAAAGAGAACTAAAATCGAGGAAACTGAGCAAGAAGAGAAGAATGTGGAAATGGAGACAGCAACAACTACAGAAGTCGCCGAAGAGCCACCAGTCCCATTAAGGAAAGAAGACGTGGAACCAAAGCCGAGCACTGGATCAGAGACGGATCCAAGCTCGGCACGCACCTCGATTCTCCCTTCCAGAACATCAGATACAGTCGGCGAAGAAGTTTCGATCAGTATTAATATCAGTGAAGCCAAAGATGAACCGACCAAAGATGAACCGGATGGTGTTTCTCGAAGTGCCACGACAATCACTGAACACAGTTTGGAGAATTCGGATGAGGAGCGAACAATGGTTGAGTAAGTGCCGCCAGTTCAAGGATCTCAAGTTCAATGGGAAAAAGAGGAGGCTCCAATTCCGGTTATCACCAATCAACCGTTGCCAACGCCAGCTCGTAATCCAGATCGCAGAGAGAGTGCAGCGGGAGACGGATGTTCGAATTGTTGTATTCGAACATCTCAATAACTTATTTCAATTATCATTTCTTGTAATTATTTTGTGTCTCTTAATTTGTTTATCAAGTATTCTAGAAGTATTTTTGAATGAATAATAAGGACGTTTTGGAATTGCGTTTTGAAGATTTCAGGTTCCCCTAAGAGGTAGTACAGGTACCAATAAATAGAAGGGCCCTCTCCACTGTCAGATTCGAGCTCAATTATCTCGGCTCCTCTAAAAGATATCAAAATTTAGTCAATTGATAAAATATTGTTCGTAAAATTATCAACATTTTATCAGTTGGCACATTTTTGATAGCTTGTATAGGAACCGAGATAATGGAGCTCAAAGGGCACGTGTAGGGTG</canonical>
            <polymorphic>ATAGACATTTCACGTGTTAGTATTTTTCTCCCCTTCGTTGAAATAAATAAATAAATAAATAAACAATTGCTGATGTACAGTATCCTTTTTAAATTCATAATATTTACAGCACATCAGAATGTCCACCGATCCGTCTGGTCCAACGTCTCCCGAACCAAAGAGAACTAAAATCGAGGAAACTGAGCAAGAAGAGAAGAATGTGGAAATGGAGACAGCAACAACTACAGAAGTCGCCGAAGAGCCACCAGTCCCATTAAGGAAAGAAGACGTGGAACCAAAGCCGAGCACTGGATCAGAGACGGATCCAAGCTCGGCACGCACCTCGATTCTCCCTTCCAGAACATCAGATACAGTCGGCGAAGAAGTTTCGATCAGTATTAATATCAGTGAAGCCAAAGATGAACCGACCAAAGATGAACCGGATGGTGTTTCTCGAAGTGCCACGACAATCACTGAACACAGTTTGGAGAATTCGGATGAGGAGCGAACAATGGTTGAGYAAGTGCCGCCAGTTCAAGGATCTCAAGTTCAATGGGAAAAAGAGGAGGCTCCAATTCCGGTTATCACCAATCAACCGTTGCCAACGCCAGCTCGTAATCCAGATCGCAGAGAGAGTGCAGCGGGAGACGGATGTTCGAATTGTTGTATTCGAACATCTCAATAACTTATTTCAATTATCATTTCTTGTAATTATTTTGTGTCTCTTAATTTGTTTATCAAGTATTCTAGAAGTATTTTTGAATGAATAATAAGGACGTTTTGGAATTGCGTTTTGAAGATTTCAGGTTCCCCTAAGAGGTAGTACAGGTACCAATAAATAGAAGGGCCCTCTCCACTGTCAGATTCGAGCTCAATTATCTCGGCTCCTCTAAAAGATATCAAAATTTAGTCAATTGATAAAATATTGTTCGTAAAATTATCAACATTTTATCAGTTGGCACATTTTTGATAGCTTGTATAGGAACCGAGATAATGGAGCTCAAAGGGCACGTGTAGGGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTAATATCAGTGAAGCCAAAGA</pcr_primer_p1>
		<pcr_primer_p2>CTCTCTGCGATCTGGATTAC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>ATTAATATCAGTGAAGCCAAAGATGAACCGACCAAAGATGAACCGGATGGTGTTTCTCGAAGTGCCACGACAATCACTGAACACAGTTTGGAGAATTCGGATGAGGAGCGAACAATGGTTGAGTAAGTGCCGCCAGTTCAAGGATCTCAAGTTCAATGGGAAAAAGAGGAGGCTCCAATTCCGGTTATCACCAATCAACCGTTGCCAACGCCAGCTCGTAATCCAGATCGCAGAGAG</canonical_amplicon>
		<polymorphic_amplicon>ATTAATATCAGTGAAGCCAAAGATGAACCGACCAAAGATGAACCGGATGGTGTTTCTCGAAGTGCCACGACAATCACTGAACACAGTTTGGAGAATTCGGATGAGGAGCGAACAATGGTTGAGYAAGTGCCGCCAGTTCAAGGATCTCAAGTTCAATGGGAAAAAGAGGAGGCTCCAATTCCGGTTATCACCAATCAACCGTTGCCAACGCCAGCTCGTAATCCAGATCGCAGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8728</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>92149</contig_pos>
        <strand>+</strand>
        <context>CTCGATTCTC[A/C]CTTCCAGAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGAGCACTGGATCAGAGACGGATCCAAGCTCGGCACGCACCTCGATTCTC</left_flank>
        <right_flank>CTTCCAGAACATCAGATACAGTCGGCGAAGAAGTTTCGATCAGTATTAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCCGCCAAAGTGTTTCCGGTGAAGCCCTCGTCAGCGGCTTTCAAAAATCGACTATTATCCTGTGAACTAAAACATTTTCTTGTCTTGAATTCAACTAATTACTAACTCGGTTTTCCTCCATCTCCCATTTAATACAAATGTATGTCCCTGTTATATCTCCTAGTTTCATAGACATTTCACGTGTTAGTATTTTTCTCCCCTTCGTTGAAATAAATAAATAAATAAATAAACAATTGCTGATGTACAGTATCCTTTTTAAATTCATAATATTTACAGCACATCAGAATGTCCACCGATCCGTCTGGTCCAACGTCTCCCGAACCAAAGAGAACTAAAATCGAGGAAACTGAGCAAGAAGAGAAGAATGTGGAAATGGAGACAGCAACAACTACAGAAGTCGCCGAAGAGCCACCAGTCCCATTAAGGAAAGAAGACGTGGAACCAAAGCCGAGCACTGGATCAGAGACGGATCCAAGCTCGGCACGCACCTCGATTCTCCCTTCCAGAACATCAGATACAGTCGGCGAAGAAGTTTCGATCAGTATTAATATCAGTGAAGCCAAAGATGAACCGACCAAAGATGAACCGGATGGTGTTTCTCGAAGTGCCACGACAATCACTGAACACAGTTTGGAGAATTCGGATGAGGAGCGAACAATGGTTGAGTAAGTGCCGCCAGTTCAAGGATCTCAAGTTCAATGGGAAAAAGAGGAGGCTCCAATTCCGGTTATCACCAATCAACCGTTGCCAACGCCAGCTCGTAATCCAGATCGCAGAGAGAGTGCAGCGGGAGACGGATGTTCGAATTGTTGTATTCGAACATCTCAATAACTTATTTCAATTATCATTTCTTGTAATTATTTTGTGTCTCTTAATTTGTTTATCAAGTATTCTAGAAGTATTTTTGAATGAATAATAAGGACGTTTTGGAATTGCGTTTTGAAGATTTCAGGTTCCCCTAAGAGGTAGTACAGGTACCAATAAATAGAAGGGCCCTCT</canonical>
            <polymorphic>ACCCGCCAAAGTGTTTCCGGTGAAGCCCTCGTCAGCGGCTTTCAAAAATCGACTATTATCCTGTGAACTAAAACATTTTCTTGTCTTGAATTCAACTAATTACTAACTCGGTTTTCCTCCATCTCCCATTTAATACAAATGTATGTCCCTGTTATATCTCCTAGTTTCATAGACATTTCACGTGTTAGTATTTTTCTCCCCTTCGTTGAAATAAATAAATAAATAAATAAACAATTGCTGATGTACAGTATCCTTTTTAAATTCATAATATTTACAGCACATCAGAATGTCCACCGATCCGTCTGGTCCAACGTCTCCCGAACCAAAGAGAACTAAAATCGAGGAAACTGAGCAAGAAGAGAAGAATGTGGAAATGGAGACAGCAACAACTACAGAAGTCGCCGAAGAGCCACCAGTCCCATTAAGGAAAGAAGACGTGGAACCAAAGCCGAGCACTGGATCAGAGACGGATCCAAGCTCGGCACGCACCTCGATTCTCMCTTCCAGAACATCAGATACAGTCGGCGAAGAAGTTTCGATCAGTATTAATATCAGTGAAGCCAAAGATGAACCGACCAAAGATGAACCGGATGGTGTTTCTCGAAGTGCCACGACAATCACTGAACACAGTTTGGAGAATTCGGATGAGGAGCGAACAATGGTTGAGTAAGTGCCGCCAGTTCAAGGATCTCAAGTTCAATGGGAAAAAGAGGAGGCTCCAATTCCGGTTATCACCAATCAACCGTTGCCAACGCCAGCTCGTAATCCAGATCGCAGAGAGAGTGCAGCGGGAGACGGATGTTCGAATTGTTGTATTCGAACATCTCAATAACTTATTTCAATTATCATTTCTTGTAATTATTTTGTGTCTCTTAATTTGTTTATCAAGTATTCTAGAAGTATTTTTGAATGAATAATAAGGACGTTTTGGAATTGCGTTTTGAAGATTTCAGGTTCCCCTAAGAGGTAGTACAGGTACCAATAAATAGAAGGGCCCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAGAACTAAAATCGAGGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TCATCTTTGGCTTCACTGATA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAGAGAACTAAAATCGAGGAAACTGAGCAAGAAGAGAAGAATGTGGAAATGGAGACAGCAACAACTACAGAAGTCGCCGAAGAGCCACCAGTCCCATTAAGGAAAGAAGACGTGGAACCAAAGCCGAGCACTGGATCAGAGACGGATCCAAGCTCGGCACGCACCTCGATTCTCCCTTCCAGAACATCAGATACAGTCGGCGAAGAAGTTTCGATCAGTATTAATATCAGTGAAGCCAAAGATGA</canonical_amplicon>
		<polymorphic_amplicon>AAGAGAACTAAAATCGAGGAAACTGAGCAAGAAGAGAAGAATGTGGAAATGGAGACAGCAACAACTACAGAAGTCGCCGAAGAGCCACCAGTCCCATTAAGGAAAGAAGACGTGGAACCAAAGCCGAGCACTGGATCAGAGACGGATCCAAGCTCGGCACGCACCTCGATTCTCMCTTCCAGAACATCAGATACAGTCGGCGAAGAAGTTTCGATCAGTATTAATATCAGTGAAGCCAAAGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8729</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>92117</contig_pos>
        <strand>+</strand>
        <context>GGATCAGAGA[C/T]GGATCCAAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCATTAAGGAAAGAAGACGTGGAACCAAAGCCGAGCACTGGATCAGAGA</left_flank>
        <right_flank>GGATCCAAGCTCGGCACGCACCTCGATTCTCCCTTCCAGAACATCAGATA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAATAGAGTAATCAGATGTTGGAACTCTTTACCCGCCAAAGTGTTTCCGGTGAAGCCCTCGTCAGCGGCTTTCAAAAATCGACTATTATCCTGTGAACTAAAACATTTTCTTGTCTTGAATTCAACTAATTACTAACTCGGTTTTCCTCCATCTCCCATTTAATACAAATGTATGTCCCTGTTATATCTCCTAGTTTCATAGACATTTCACGTGTTAGTATTTTTCTCCCCTTCGTTGAAATAAATAAATAAATAAATAAACAATTGCTGATGTACAGTATCCTTTTTAAATTCATAATATTTACAGCACATCAGAATGTCCACCGATCCGTCTGGTCCAACGTCTCCCGAACCAAAGAGAACTAAAATCGAGGAAACTGAGCAAGAAGAGAAGAATGTGGAAATGGAGACAGCAACAACTACAGAAGTCGCCGAAGAGCCACCAGTCCCATTAAGGAAAGAAGACGTGGAACCAAAGCCGAGCACTGGATCAGAGACGGATCCAAGCTCGGCACGCACCTCGATTCTCCCTTCCAGAACATCAGATACAGTCGGCGAAGAAGTTTCGATCAGTATTAATATCAGTGAAGCCAAAGATGAACCGACCAAAGATGAACCGGATGGTGTTTCTCGAAGTGCCACGACAATCACTGAACACAGTTTGGAGAATTCGGATGAGGAGCGAACAATGGTTGAGTAAGTGCCGCCAGTTCAAGGATCTCAAGTTCAATGGGAAAAAGAGGAGGCTCCAATTCCGGTTATCACCAATCAACCGTTGCCAACGCCAGCTCGTAATCCAGATCGCAGAGAGAGTGCAGCGGGAGACGGATGTTCGAATTGTTGTATTCGAACATCTCAATAACTTATTTCAATTATCATTTCTTGTAATTATTTTGTGTCTCTTAATTTGTTTATCAAGTATTCTAGAAGTATTTTTGAATGAATAATAAGGACGTTTTGGAATTGCGTTTTGAAGATTTCAGGTTCCCCTAAGAGGT</canonical>
            <polymorphic>TCTAATAGAGTAATCAGATGTTGGAACTCTTTACCCGCCAAAGTGTTTCCGGTGAAGCCCTCGTCAGCGGCTTTCAAAAATCGACTATTATCCTGTGAACTAAAACATTTTCTTGTCTTGAATTCAACTAATTACTAACTCGGTTTTCCTCCATCTCCCATTTAATACAAATGTATGTCCCTGTTATATCTCCTAGTTTCATAGACATTTCACGTGTTAGTATTTTTCTCCCCTTCGTTGAAATAAATAAATAAATAAATAAACAATTGCTGATGTACAGTATCCTTTTTAAATTCATAATATTTACAGCACATCAGAATGTCCACCGATCCGTCTGGTCCAACGTCTCCCGAACCAAAGAGAACTAAAATCGAGGAAACTGAGCAAGAAGAGAAGAATGTGGAAATGGAGACAGCAACAACTACAGAAGTCGCCGAAGAGCCACCAGTCCCATTAAGGAAAGAAGACGTGGAACCAAAGCCGAGCACTGGATCAGAGAYGGATCCAAGCTCGGCACGCACCTCGATTCTCCCTTCCAGAACATCAGATACAGTCGGCGAAGAAGTTTCGATCAGTATTAATATCAGTGAAGCCAAAGATGAACCGACCAAAGATGAACCGGATGGTGTTTCTCGAAGTGCCACGACAATCACTGAACACAGTTTGGAGAATTCGGATGAGGAGCGAACAATGGTTGAGTAAGTGCCGCCAGTTCAAGGATCTCAAGTTCAATGGGAAAAAGAGGAGGCTCCAATTCCGGTTATCACCAATCAACCGTTGCCAACGCCAGCTCGTAATCCAGATCGCAGAGAGAGTGCAGCGGGAGACGGATGTTCGAATTGTTGTATTCGAACATCTCAATAACTTATTTCAATTATCATTTCTTGTAATTATTTTGTGTCTCTTAATTTGTTTATCAAGTATTCTAGAAGTATTTTTGAATGAATAATAAGGACGTTTTGGAATTGCGTTTTGAAGATTTCAGGTTCCCCTAAGAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAGAACTAAAATCGAGGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TCATCTTTGGCTTCACTGATA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAGAGAACTAAAATCGAGGAAACTGAGCAAGAAGAGAAGAATGTGGAAATGGAGACAGCAACAACTACAGAAGTCGCCGAAGAGCCACCAGTCCCATTAAGGAAAGAAGACGTGGAACCAAAGCCGAGCACTGGATCAGAGACGGATCCAAGCTCGGCACGCACCTCGATTCTCCCTTCCAGAACATCAGATACAGTCGGCGAAGAAGTTTCGATCAGTATTAATATCAGTGAAGCCAAAGATGA</canonical_amplicon>
		<polymorphic_amplicon>AAGAGAACTAAAATCGAGGAAACTGAGCAAGAAGAGAAGAATGTGGAAATGGAGACAGCAACAACTACAGAAGTCGCCGAAGAGCCACCAGTCCCATTAAGGAAAGAAGACGTGGAACCAAAGCCGAGCACTGGATCAGAGAYGGATCCAAGCTCGGCACGCACCTCGATTCTCCCTTCCAGAACATCAGATACAGTCGGCGAAGAAGTTTCGATCAGTATTAATATCAGTGAAGCCAAAGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8756</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>159204</contig_pos>
        <strand>+</strand>
        <context>TTTTTTGTTG[A/G]GACCTGCAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACTATAGATTTCTCAAATTTCCCCAAAATCTTCAAACTTTTTTTGTTG</left_flank>
        <right_flank>GACCTGCAGCAGGGCTTATGTGCGCGACGAGAAAAATGATAATCCAGTGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATACAGTAACCTTGATTCGCCCGTCAACTTTGAGTTTAATTATCTCGGCTCCTGTAAAAGATATTGAAAATTTGTCAACTGATAAATTGTTCATCATAAAATCAACAATATTTTATCAGTTGGAAGTTTTCAAATATCTTTAACAGGAGCCGAGATAATTGAGCTCAAAGTTTGCACCTTAGAAAATTCCGTTATCCCCCTAGATATCAAGGACAGTATGCTTTATTGCTTATTCGATCTCTACAACTAGTCTTCGTACTTTTTGAAAAACACTGCCAAATGCAAAAGTTTTGTCACCCGTTCCTTATTTAGAGATGAGAAACTAAGGCCAAACAACCATGGCTGCTGACCCGCTTTTCTCATTTCTCTCGATCCTCAGGTCGCCCAGCCAACTATTCGTTTTATTATGTCCTCCAATTCCTTATTCTTCTTCTTGTTTTTCAACACAAAACTATAGATTTCTCAAATTTCCCCAAAATCTTCAAACTTTTTTTGTTGGGACCTGCAGCAGGGCTTATGTGCGCGACGAGAAAAATGATAATCCAGTGTAGCAGCAAGAAGAGACATTTCTTTGCCCACGAGAGATAGGAGAGTTAGACAGAGCGAAAAGGAGTAAAGTAAAATAGAGAAAAGAATGGAACCAATGATTCGATTTGTGAGTCTGTTGTGTTGAAAGAACCAACGAGTCGGCAGAGCTTTTGACAAGACAAAACACTTGTGTTCTTTTTTCTTCGCTAAGCGACACACGGTGTGGTGGTCCGTTTTTCTGCAGAATGCGACACTCTTGAATTTTGAATGAGACGAAAAAAGAAGCGACTGCCTCGATGTGCATCTCGTCCTAATTCACCACACACGCACATTACTTTCTGGGCGCAGAGTCGTCGCCAAATTTTTATGAAAACATTGCCCAAATAAGTATCCTAATAATCTTTGGAGCCTTCTAGCCGAATCGTGACGTAAATAGCGAGAGAAACCAAGGTTTTTCGGCAGGCGGCGTAT</canonical>
            <polymorphic>AATACAGTAACCTTGATTCGCCCGTCAACTTTGAGTTTAATTATCTCGGCTCCTGTAAAAGATATTGAAAATTTGTCAACTGATAAATTGTTCATCATAAAATCAACAATATTTTATCAGTTGGAAGTTTTCAAATATCTTTAACAGGAGCCGAGATAATTGAGCTCAAAGTTTGCACCTTAGAAAATTCCGTTATCCCCCTAGATATCAAGGACAGTATGCTTTATTGCTTATTCGATCTCTACAACTAGTCTTCGTACTTTTTGAAAAACACTGCCAAATGCAAAAGTTTTGTCACCCGTTCCTTATTTAGAGATGAGAAACTAAGGCCAAACAACCATGGCTGCTGACCCGCTTTTCTCATTTCTCTCGATCCTCAGGTCGCCCAGCCAACTATTCGTTTTATTATGTCCTCCAATTCCTTATTCTTCTTCTTGTTTTTCAACACAAAACTATAGATTTCTCAAATTTCCCCAAAATCTTCAAACTTTTTTTGTTGRGACCTGCAGCAGGGCTTATGTGCGCGACGAGAAAAATGATAATCCAGTGTAGCAGCAAGAAGAGACATTTCTTTGCCCACGAGAGATAGGAGAGTTAGACAGAGCGAAAAGGAGTAAAGTAAAATAGAGAAAAGAATGGAACCAATGATTCGATTTGTGAGTCTGTTGTGTTGAAAGAACCAACGAGTCGGCAGAGCTTTTGACAAGACAAAACACTTGTGTTCTTTTTTCTTCGCTAAGCGACACACGGTGTGGTGGTCCGTTTTTCTGCAGAATGCGACACTCTTGAATTTTGAATGAGACGAAAAAAGAAGCGACTGCCTCGATGTGCATCTCGTCCTAATTCACCACACACGCACATTACTTTCTGGGCGCAGAGTCGTCGCCAAATTTTTATGAAAACATTGCCCAAATAAGTATCCTAATAATCTTTGGAGCCTTCTAGCCGAATCGTGACGTAAATAGCGAGAGAAACCAAGGTTTTTCGGCAGGCGGCGTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>500 257 243</canonical_bands>
                <polymorphic_bands>757 243</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 257 243</canonical_bands>
                <polymorphic_bands>757 243</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>352 296 139 99 64 50</canonical_bands>
                <polymorphic_bands>491 296 99 64 50</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATTATGTCCTCCAATTCCTTA</pcr_primer_p1>
		<pcr_primer_p2>ATTGGTTCCATTCTTTTCTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTATTATGTCCTCCAATTCCTTATTCTTCTTCTTGTTTTTCAACACAAAACTATAGATTTCTCAAATTTCCCCAAAATCTTCAAACTTTTTTTGTTGGGACCTGCAGCAGGGCTTATGTGCGCGACGAGAAAAATGATAATCCAGTGTAGCAGCAAGAAGAGACATTTCTTTGCCCACGAGAGATAGGAGAGTTAGACAGAGCGAAAAGGAGTAAAGTAAAATAGAGAAAAGAATGGAACCAAT</canonical_amplicon>
		<polymorphic_amplicon>TTATTATGTCCTCCAATTCCTTATTCTTCTTCTTGTTTTTCAACACAAAACTATAGATTTCTCAAATTTCCCCAAAATCTTCAAACTTTTTTTGTTGRGACCTGCAGCAGGGCTTATGTGCGCGACGAGAAAAATGATAATCCAGTGTAGCAGCAAGAAGAGACATTTCTTTGCCCACGAGAGATAGGAGAGTTAGACAGAGCGAAAAGGAGTAAAGTAAAATAGAGAAAAGAATGGAACCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8757</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>159280</contig_pos>
        <strand>+</strand>
        <context>CATTTCTTTG[A/C]YCACGAGAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GACGAGAAAAATGATAATCCAGTGTAGCAGCAAGAAGAGACATTTCTTTG</left_flank>
        <right_flank>CCACGAGAGATAGGAGAGTTAGACAGAGCGAAAAGGAGTAAAGTAAAATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACTGATAAATTGTTCATCATAAAATCAACAATATTTTATCAGTTGGAAGTTTTCAAATATCTTTAACAGGAGCCGAGATAATTGAGCTCAAAGTTTGCACCTTAGAAAATTCCGTTATCCCCCTAGATATCAAGGACAGTATGCTTTATTGCTTATTCGATCTCTACAACTAGTCTTCGTACTTTTTGAAAAACACTGCCAAATGCAAAAGTTTTGTCACCCGTTCCTTATTTAGAGATGAGAAACTAAGGCCAAACAACCATGGCTGCTGACCCGCTTTTCTCATTTCTCTCGATCCTCAGGTCGCCCAGCCAACTATTCGTTTTATTATGTCCTCCAATTCCTTATTCTTCTTCTTGTTTTTCAACACAAAACTATAGATTTCTCAAATTTCCCCAAAATCTTCAAACTTTTTTTGTTGGGACCTGCAGCAGGGCTTATGTGCGCGACGAGAAAAATGATAATCCAGTGTAGCAGCAAGAAGAGACATTTCTTTGCCCACGAGAGATAGGAGAGTTAGACAGAGCGAAAAGGAGTAAAGTAAAATAGAGAAAAGAATGGAACCAATGATTCGATTTGTGAGTCTGTTGTGTTGAAAGAACCAACGAGTCGGCAGAGCTTTTGACAAGACAAAACACTTGTGTTCTTTTTTCTTCGCTAAGCGACACACGGTGTGGTGGTCCGTTTTTCTGCAGAATGCGACACTCTTGAATTTTGAATGAGACGAAAAAAGAAGCGACTGCCTCGATGTGCATCTCGTCCTAATTCACCACACACGCACATTACTTTCTGGGCGCAGAGTCGTCGCCAAATTTTTATGAAAACATTGCCCAAATAAGTATCCTAATAATCTTTGGAGCCTTCTAGCCGAATCGTGACGTAAATAGCGAGAGAAACCAAGGTTTTTCGGCAGGCGGCGTATCATTCTTGGGGGGTGAATTCAGCCCAAAAAAGGACAAATTTGCATACAATGTTCAGTTCTTTTCATGACAATACGA</canonical>
            <polymorphic>CAACTGATAAATTGTTCATCATAAAATCAACAATATTTTATCAGTTGGAAGTTTTCAAATATCTTTAACAGGAGCCGAGATAATTGAGCTCAAAGTTTGCACCTTAGAAAATTCCGTTATCCCCCTAGATATCAAGGACAGTATGCTTTATTGCTTATTCGATCTCTACAACTAGTCTTCGTACTTTTTGAAAAACACTGCCAAATGCAAAAGTTTTGTCACCCGTTCCTTATTTAGAGATGAGAAACTAAGGCCAAACAACCATGGCTGCTGACCCGCTTTTCTCATTTCTCTCGATCCTCAGGTCGCCCAGCCAACTATTCGTTTTATTATGTCCTCCAATTCCTTATTCTTCTTCTTGTTTTTCAACACAAAACTATAGATTTCTCAAATTTCCCCAAAATCTTCAAACTTTTTTTGTTGGGACCTGCAGCAGGGCTTATGTGCGCGACGAGAAAAATGATAATCCAGTGTAGCAGCAAGAAGAGACATTTCTTTGMCCACGAGAGATAGGAGAGTTAGACAGAGCGAAAAGGAGTAAAGTAAAATAGAGAAAAGAATGGAACCAATGATTCGATTTGTGAGTCTGTTGTGTTGAAAGAACCAACGAGTCGGCAGAGCTTTTGACAAGACAAAACACTTGTGTTCTTTTTTCTTCGCTAAGCGACACACGGTGTGGTGGTCCGTTTTTCTGCAGAATGCGACACTCTTGAATTTTGAATGAGACGAAAAAAGAAGCGACTGCCTCGATGTGCATCTCGTCCTAATTCACCACACACGCACATTACTTTCTGGGCGCAGAGTCGTCGCCAAATTTTTATGAAAACATTGCCCAAATAAGTATCCTAATAATCTTTGGAGCCTTCTAGCCGAATCGTGACGTAAATAGCGAGAGAAACCAAGGTTTTTCGGCAGGCGGCGTATCATTCTTGGGGGGTGAATTCAGCCCAAAAAAGGACAAATTTGCATACAATGTTCAGTTCTTTTCATGACAATACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTATGTCCTCCAATTCCTTA</pcr_primer_p1>
		<pcr_primer_p2>ATTGGTTCCATTCTTTTCTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTATTATGTCCTCCAATTCCTTATTCTTCTTCTTGTTTTTCAACACAAAACTATAGATTTCTCAAATTTCCCCAAAATCTTCAAACTTTTTTTGTTGGGACCTGCAGCAGGGCTTATGTGCGCGACGAGAAAAATGATAATCCAGTGTAGCAGCAAGAAGAGACATTTCTTTGCCCACGAGAGATAGGAGAGTTAGACAGAGCGAAAAGGAGTAAAGTAAAATAGAGAAAAGAATGGAACCAAT</canonical_amplicon>
		<polymorphic_amplicon>TTATTATGTCCTCCAATTCCTTATTCTTCTTCTTGTTTTTCAACACAAAACTATAGATTTCTCAAATTTCCCCAAAATCTTCAAACTTTTTTTGTTGGGACCTGCAGCAGGGCTTATGTGCGCGACGAGAAAAATGATAATCCAGTGTAGCAGCAAGAAGAGACATTTCTTTGMCCACGAGAGATAGGAGAGTTAGACAGAGCGAAAAGGAGTAAAGTAAAATAGAGAAAAGAATGGAACCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8758</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>159281</contig_pos>
        <strand>+</strand>
        <context>ATTTCTTTGM[C/T]CACGAGAGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGAGAAAAATGATAATCCAGTGTAGCAGCAAGAAGAGACATTTCTTTGC</left_flank>
        <right_flank>CACGAGAGATAGGAGAGTTAGACAGAGCGAAAAGGAGTAAAGTAAAATAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTGATAAATTGTTCATCATAAAATCAACAATATTTTATCAGTTGGAAGTTTTCAAATATCTTTAACAGGAGCCGAGATAATTGAGCTCAAAGTTTGCACCTTAGAAAATTCCGTTATCCCCCTAGATATCAAGGACAGTATGCTTTATTGCTTATTCGATCTCTACAACTAGTCTTCGTACTTTTTGAAAAACACTGCCAAATGCAAAAGTTTTGTCACCCGTTCCTTATTTAGAGATGAGAAACTAAGGCCAAACAACCATGGCTGCTGACCCGCTTTTCTCATTTCTCTCGATCCTCAGGTCGCCCAGCCAACTATTCGTTTTATTATGTCCTCCAATTCCTTATTCTTCTTCTTGTTTTTCAACACAAAACTATAGATTTCTCAAATTTCCCCAAAATCTTCAAACTTTTTTTGTTGGGACCTGCAGCAGGGCTTATGTGCGCGACGAGAAAAATGATAATCCAGTGTAGCAGCAAGAAGAGACATTTCTTTGCCCACGAGAGATAGGAGAGTTAGACAGAGCGAAAAGGAGTAAAGTAAAATAGAGAAAAGAATGGAACCAATGATTCGATTTGTGAGTCTGTTGTGTTGAAAGAACCAACGAGTCGGCAGAGCTTTTGACAAGACAAAACACTTGTGTTCTTTTTTCTTCGCTAAGCGACACACGGTGTGGTGGTCCGTTTTTCTGCAGAATGCGACACTCTTGAATTTTGAATGAGACGAAAAAAGAAGCGACTGCCTCGATGTGCATCTCGTCCTAATTCACCACACACGCACATTACTTTCTGGGCGCAGAGTCGTCGCCAAATTTTTATGAAAACATTGCCCAAATAAGTATCCTAATAATCTTTGGAGCCTTCTAGCCGAATCGTGACGTAAATAGCGAGAGAAACCAAGGTTTTTCGGCAGGCGGCGTATCATTCTTGGGGGGTGAATTCAGCCCAAAAAAGGACAAATTTGCATACAATGTTCAGTTCTTTTCATGACAATACGAT</canonical>
            <polymorphic>AACTGATAAATTGTTCATCATAAAATCAACAATATTTTATCAGTTGGAAGTTTTCAAATATCTTTAACAGGAGCCGAGATAATTGAGCTCAAAGTTTGCACCTTAGAAAATTCCGTTATCCCCCTAGATATCAAGGACAGTATGCTTTATTGCTTATTCGATCTCTACAACTAGTCTTCGTACTTTTTGAAAAACACTGCCAAATGCAAAAGTTTTGTCACCCGTTCCTTATTTAGAGATGAGAAACTAAGGCCAAACAACCATGGCTGCTGACCCGCTTTTCTCATTTCTCTCGATCCTCAGGTCGCCCAGCCAACTATTCGTTTTATTATGTCCTCCAATTCCTTATTCTTCTTCTTGTTTTTCAACACAAAACTATAGATTTCTCAAATTTCCCCAAAATCTTCAAACTTTTTTTGTTGGGACCTGCAGCAGGGCTTATGTGCGCGACGAGAAAAATGATAATCCAGTGTAGCAGCAAGAAGAGACATTTCTTTGCYCACGAGAGATAGGAGAGTTAGACAGAGCGAAAAGGAGTAAAGTAAAATAGAGAAAAGAATGGAACCAATGATTCGATTTGTGAGTCTGTTGTGTTGAAAGAACCAACGAGTCGGCAGAGCTTTTGACAAGACAAAACACTTGTGTTCTTTTTTCTTCGCTAAGCGACACACGGTGTGGTGGTCCGTTTTTCTGCAGAATGCGACACTCTTGAATTTTGAATGAGACGAAAAAAGAAGCGACTGCCTCGATGTGCATCTCGTCCTAATTCACCACACACGCACATTACTTTCTGGGCGCAGAGTCGTCGCCAAATTTTTATGAAAACATTGCCCAAATAAGTATCCTAATAATCTTTGGAGCCTTCTAGCCGAATCGTGACGTAAATAGCGAGAGAAACCAAGGTTTTTCGGCAGGCGGCGTATCATTCTTGGGGGGTGAATTCAGCCCAAAAAAGGACAAATTTGCATACAATGTTCAGTTCTTTTCATGACAATACGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTATGTCCTCCAATTCCTTA</pcr_primer_p1>
		<pcr_primer_p2>ATTGGTTCCATTCTTTTCTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTATTATGTCCTCCAATTCCTTATTCTTCTTCTTGTTTTTCAACACAAAACTATAGATTTCTCAAATTTCCCCAAAATCTTCAAACTTTTTTTGTTGGGACCTGCAGCAGGGCTTATGTGCGCGACGAGAAAAATGATAATCCAGTGTAGCAGCAAGAAGAGACATTTCTTTGCCCACGAGAGATAGGAGAGTTAGACAGAGCGAAAAGGAGTAAAGTAAAATAGAGAAAAGAATGGAACCAAT</canonical_amplicon>
		<polymorphic_amplicon>TTATTATGTCCTCCAATTCCTTATTCTTCTTCTTGTTTTTCAACACAAAACTATAGATTTCTCAAATTTCCCCAAAATCTTCAAACTTTTTTTGTTGGGACCTGCAGCAGGGCTTATGTGCGCGACGAGAAAAATGATAATCCAGTGTAGCAGCAAGAAGAGACATTTCTTTGCYCACGAGAGATAGGAGAGTTAGACAGAGCGAAAAGGAGTAAAGTAAAATAGAGAAAAGAATGGAACCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8759</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>159586</contig_pos>
        <strand>+</strand>
        <context>GCGCAGAGTC[G/T]TCGCCAAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATCTCGTCCTAATTCACCACACACGCACATTACTTTCTGGGCGCAGAGTC</left_flank>
        <right_flank>TCGCCAAATTTTTATGAAAACATTGCCCAAATAAGTATCCTAATAATCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCCCAGCCAACTATTCGTTTTATTATGTCCTCCAATTCCTTATTCTTCTTCTTGTTTTTCAACACAAAACTATAGATTTCTCAAATTTCCCCAAAATCTTCAAACTTTTTTTGTTGGGACCTGCAGCAGGGCTTATGTGCGCGACGAGAAAAATGATAATCCAGTGTAGCAGCAAGAAGAGACATTTCTTTGCCCACGAGAGATAGGAGAGTTAGACAGAGCGAAAAGGAGTAAAGTAAAATAGAGAAAAGAATGGAACCAATGATTCGATTTGTGAGTCTGTTGTGTTGAAAGAACCAACGAGTCGGCAGAGCTTTTGACAAGACAAAACACTTGTGTTCTTTTTTCTTCGCTAAGCGACACACGGTGTGGTGGTCCGTTTTTCTGCAGAATGCGACACTCTTGAATTTTGAATGAGACGAAAAAAGAAGCGACTGCCTCGATGTGCATCTCGTCCTAATTCACCACACACGCACATTACTTTCTGGGCGCAGAGTCGTCGCCAAATTTTTATGAAAACATTGCCCAAATAAGTATCCTAATAATCTTTGGAGCCTTCTAGCCGAATCGTGACGTAAATAGCGAGAGAAACCAAGGTTTTTCGGCAGGCGGCGTATCATTCTTGGGGGGTGAATTCAGCCCAAAAAAGGACAAATTTGCATACAATGTTCAGTTCTTTTCATGACAATACGATGTGATTTTTGAATAGAATAGACGAAAATTTGGAAAATGTTTGAGAAAAAAAACCTAATTTTTAGAATTTTCGAGATTTTGTTCATCATAAAATTTAGTGCAATTTGATCGCTGTTATCTCTAGAACCTGTTTTTCATAGGACTTGATTGCCGGAGTGGCTCGAACGAGGCTAAAGTCTGAAATAGTACGATTTAGCCGCTCCGCATCGTAGCGACGGATTGCAAGTTCTCAGGTGCCAGTTCTTTTGTTGTAATTCGACAATAATTTTCTTATTTTTTCAAGCAAAATGCTGACTTTCAGCAGTA</canonical>
            <polymorphic>CGCCCAGCCAACTATTCGTTTTATTATGTCCTCCAATTCCTTATTCTTCTTCTTGTTTTTCAACACAAAACTATAGATTTCTCAAATTTCCCCAAAATCTTCAAACTTTTTTTGTTGGGACCTGCAGCAGGGCTTATGTGCGCGACGAGAAAAATGATAATCCAGTGTAGCAGCAAGAAGAGACATTTCTTTGCCCACGAGAGATAGGAGAGTTAGACAGAGCGAAAAGGAGTAAAGTAAAATAGAGAAAAGAATGGAACCAATGATTCGATTTGTGAGTCTGTTGTGTTGAAAGAACCAACGAGTCGGCAGAGCTTTTGACAAGACAAAACACTTGTGTTCTTTTTTCTTCGCTAAGCGACACACGGTGTGGTGGTCCGTTTTTCTGCAGAATGCGACACTCTTGAATTTTGAATGAGACGAAAAAAGAAGCGACTGCCTCGATGTGCATCTCGTCCTAATTCACCACACACGCACATTACTTTCTGGGCGCAGAGTCKTCGCCAAATTTTTATGAAAACATTGCCCAAATAAGTATCCTAATAATCTTTGGAGCCTTCTAGCCGAATCGTGACGTAAATAGCGAGAGAAACCAAGGTTTTTCGGCAGGCGGCGTATCATTCTTGGGGGGTGAATTCAGCCCAAAAAAGGACAAATTTGCATACAATGTTCAGTTCTTTTCATGACAATACGATGTGATTTTTGAATAGAATAGACGAAAATTTGGAAAATGTTTGAGAAAAAAAACCTAATTTTTAGAATTTTCGAGATTTTGTTCATCATAAAATTTAGTGCAATTTGATCGCTGTTATCTCTAGAACCTGTTTTTCATAGGACTTGATTGCCGGAGTGGCTCGAACGAGGCTAAAGTCTGAAATAGTACGATTTAGCCGCTCCGCATCGTAGCGACGGATTGCAAGTTCTCAGGTGCCAGTTCTTTTGTTGTAATTCGACAATAATTTTCTTATTTTTTCAAGCAAAATGCTGACTTTCAGCAGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>408 356 147 89</canonical_bands>
                <polymorphic_bands>764 147 89</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGACAAGACAAAACACTTG</pcr_primer_p1>
		<pcr_primer_p2>CTAGAAGGCTCCAAAGATTATTAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTTGACAAGACAAAACACTTGTGTTCTTTTTTCTTCGCTAAGCGACACACGGTGTGGTGGTCCGTTTTTCTGCAGAATGCGACACTCTTGAATTTTGAATGAGACGAAAAAAGAAGCGACTGCCTCGATGTGCATCTCGTCCTAATTCACCACACACGCACATTACTTTCTGGGCGCAGAGTCGTCGCCAAATTTTTATGAAAACATTGCCCAAATAAGTATCCTAATAATCTTTGGAGCCTTCTAG</canonical_amplicon>
		<polymorphic_amplicon>TTTTGACAAGACAAAACACTTGTGTTCTTTTTTCTTCGCTAAGCGACACACGGTGTGGTGGTCCGTTTTTCTGCAGAATGCGACACTCTTGAATTTTGAATGAGACGAAAAAAGAAGCGACTGCCTCGATGTGCATCTCGTCCTAATTCACCACACACGCACATTACTTTCTGGGCGCAGAGTCKTCGCCAAATTTTTATGAAAACATTGCCCAAATAAGTATCCTAATAATCTTTGGAGCCTTCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8760</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>161623</contig_pos>
        <strand>+</strand>
        <context>GCTGAAAATC[C/T]GGAATTTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCAGAAGATAGTCCAAAGGTAATATCGTCTGAAAATTGAGCTGAAAATC</left_flank>
        <right_flank>GGAATTTTCTGAAAGAATGACACAGAATTTGGCTAAAATGAGCTGAAAAT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTTTCAGAAGACGGAATACGAAAAGGTCCGGGCGGTGCGGTTCCAGCGCATGTCCGCCGGGGATCGTTCACCAAAACCCAGTCGGCGCCGATTCCACGTGGCAGTAACGAAGAAGCGGATACTGATTGTCTACAGAGGTTTCTGAAGATCAAAGTGAAACAAGTCACAGAATCCGATGGGACCGTATCGGGAACGCTGCTGGTGACACCGAATTGCTTGATGTTCGATCCGGATGTTTCGCATCCGTTGGTGAAGGAGAACGGACCGGATTTGTATGGAATGGTGGCGAAGTGAGGGATTTCATGAATTATTTTTTTGAAAAATCATAAAAATTGATTTCAGTATGGACGAAATTCAGTCAGTGTCGGTGTACAAAGAGATCAGCGGATTGACCGGTGATAAGGAAGAGAAGAAGAGGGATATTTTCGATCCTGAACATTTGAGAACGCCAGAAGATAGTCCAAAGGTAATATCGTCTGAAAATTGAGCTGAAAATCCGGAATTTTCTGAAAGAATGACACAGAATTTGGCTAAAATGAGCTGAAAATCGATTTCAGTCATTTTGGCTTAAAAACAAACGATTTCAGCTAAGTTTTAGTCGAAAAAGTAAATTTTCGCTGGAAAATTGAGCTGAAAATCTGGAATTTTCTGGAATAATGACCCAGAATTTTGAGAATTTTGCTAAAAATCAATTCAAGTCATTTTTCTGAAAATCAATAATTTCAGCTCATTTTTAGTCGAAAAAAACGCATTTTCGGCTGAAAATCTTGAATTTTCTGTAAAGATGAGTCAGAATTTTGAGAATTTTGCTAAAAATCGATTCAAGTCATTTTCGCTGAAAAAATACTATTTCAGTTCTTTTGTAGTCGAAAAAACGCATTTTTGGCTGAAAAAATGAGCTGAAATCTGGAATTTTCTGTAAAAATGACCCAGAAGTTTGAGAGTTTCACTGAAAATCGATTTCAGTCATTTTGGCTTAAAAACAAACGATTTCAGCT</canonical>
            <polymorphic>TCTTTTCAGAAGACGGAATACGAAAAGGTCCGGGCGGTGCGGTTCCAGCGCATGTCCGCCGGGGATCGTTCACCAAAACCCAGTCGGCGCCGATTCCACGTGGCAGTAACGAAGAAGCGGATACTGATTGTCTACAGAGGTTTCTGAAGATCAAAGTGAAACAAGTCACAGAATCCGATGGGACCGTATCGGGAACGCTGCTGGTGACACCGAATTGCTTGATGTTCGATCCGGATGTTTCGCATCCGTTGGTGAAGGAGAACGGACCGGATTTGTATGGAATGGTGGCGAAGTGAGGGATTTCATGAATTATTTTTTTGAAAAATCATAAAAATTGATTTCAGTATGGACGAAATTCAGTCAGTGTCGGTGTACAAAGAGATCAGCGGATTGACCGGTGATAAGGAAGAGAAGAAGAGGGATATTTTCGATCCTGAACATTTGAGAACGCCAGAAGATAGTCCAAAGGTAATATCGTCTGAAAATTGAGCTGAAAATCYGGAATTTTCTGAAAGAATGACACAGAATTTGGCTAAAATGAGCTGAAAATCGATTTCAGTCATTTTGGCTTAAAAACAAACGATTTCAGCTAAGTTTTAGTCGAAAAAGTAAATTTTCGCTGGAAAATTGAGCTGAAAATCTGGAATTTTCTGGAATAATGACCCAGAATTTTGAGAATTTTGCTAAAAATCAATTCAAGTCATTTTTCTGAAAATCAATAATTTCAGCTCATTTTTAGTCGAAAAAAACGCATTTTCGGCTGAAAATCTTGAATTTTCTGTAAAGATGAGTCAGAATTTTGAGAATTTTGCTAAAAATCGATTCAAGTCATTTTCGCTGAAAAAATACTATTTCAGTTCTTTTGTAGTCGAAAAAACGCATTTTTGGCTGAAAAAATGAGCTGAAATCTGGAATTTTCTGTAAAAATGACCCAGAAGTTTGAGAGTTTCACTGAAAATCGATTTCAGTCATTTTGGCTTAAAAACAAACGATTTCAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCCGGA</site>
                <isoschizomers>
                    <enzyme>AccIII</enzyme>
                    <enzyme>BseAI</enzyme>
                    <enzyme>BsiMI</enzyme>
                    <enzyme>Bsp13I</enzyme>
                    <enzyme>BspEI</enzyme>
                    <enzyme>BspMII</enzyme>
                    <enzyme>Kpn2I</enzyme>
                    <enzyme>MroI</enzyme>
                </isoschizomers>
                <canonical_bands>502 268 230</canonical_bands>
                <polymorphic_bands>770 230</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>502 230 128 104 36</canonical_bands>
                <polymorphic_bands>606 230 128 36</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 172 128 104 36 30 29</canonical_bands>
                <polymorphic_bands>605 172 128 36 30 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAGGAAGAGAAGAAGAGGGATA</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCCAGATTTTCAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAAGGAAGAGAAGAAGAGGGATATTTTCGATCCTGAACATTTGAGAACGCCAGAAGATAGTCCAAAGGTAATATCGTCTGAAAATTGAGCTGAAAATCCGGAATTTTCTGAAAGAATGACACAGAATTTGGCTAAAATGAGCTGAAAATCGATTTCAGTCATTTTGGCTTAAAAACAAACGATTTCAGCTAAGTTTTAGTCGAAAAAGTAAATTTTCGCTGGAAAATTGAGCTGAAAATCTGGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TAAGGAAGAGAAGAAGAGGGATATTTTCGATCCTGAACATTTGAGAACGCCAGAAGATAGTCCAAAGGTAATATCGTCTGAAAATTGAGCTGAAAATCYGGAATTTTCTGAAAGAATGACACAGAATTTGGCTAAAATGAGCTGAAAATCGATTTCAGTCATTTTGGCTTAAAAACAAACGATTTCAGCTAAGTTTTAGTCGAAAAAGTAAATTTTCGCTGGAAAATTGAGCTGAAAATCTGGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8761</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>161561</contig_pos>
        <strand>+</strand>
        <context>TCGATCCTGA[A/G]CATTTGAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGATTGACCGGTGATAAGGAAGAGAAGAAGAGGGATATTTTCGATCCTGA</left_flank>
        <right_flank>CATTTGAGAACGCCAGAAGATAGTCCAAAGGTAATATCGTCTGAAAATTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCATTTTGTCTTTATAAGTGCGCAGAGCACCAGGAAATGAGAAAAAAGAACAAAGATTGTTTCTTTTCAGAAGACGGAATACGAAAAGGTCCGGGCGGTGCGGTTCCAGCGCATGTCCGCCGGGGATCGTTCACCAAAACCCAGTCGGCGCCGATTCCACGTGGCAGTAACGAAGAAGCGGATACTGATTGTCTACAGAGGTTTCTGAAGATCAAAGTGAAACAAGTCACAGAATCCGATGGGACCGTATCGGGAACGCTGCTGGTGACACCGAATTGCTTGATGTTCGATCCGGATGTTTCGCATCCGTTGGTGAAGGAGAACGGACCGGATTTGTATGGAATGGTGGCGAAGTGAGGGATTTCATGAATTATTTTTTTGAAAAATCATAAAAATTGATTTCAGTATGGACGAAATTCAGTCAGTGTCGGTGTACAAAGAGATCAGCGGATTGACCGGTGATAAGGAAGAGAAGAAGAGGGATATTTTCGATCCTGAACATTTGAGAACGCCAGAAGATAGTCCAAAGGTAATATCGTCTGAAAATTGAGCTGAAAATCCGGAATTTTCTGAAAGAATGACACAGAATTTGGCTAAAATGAGCTGAAAATCGATTTCAGTCATTTTGGCTTAAAAACAAACGATTTCAGCTAAGTTTTAGTCGAAAAAGTAAATTTTCGCTGGAAAATTGAGCTGAAAATCTGGAATTTTCTGGAATAATGACCCAGAATTTTGAGAATTTTGCTAAAAATCAATTCAAGTCATTTTTCTGAAAATCAATAATTTCAGCTCATTTTTAGTCGAAAAAAACGCATTTTCGGCTGAAAATCTTGAATTTTCTGTAAAGATGAGTCAGAATTTTGAGAATTTTGCTAAAAATCGATTCAAGTCATTTTCGCTGAAAAAATACTATTTCAGTTCTTTTGTAGTCGAAAAAACGCATTTTTGGCTGAAAAAATGAGCTGAAATCTGGAATTTTCTGTAAAAATGACCCAGAAG</canonical>
            <polymorphic>CTCATTTTGTCTTTATAAGTGCGCAGAGCACCAGGAAATGAGAAAAAAGAACAAAGATTGTTTCTTTTCAGAAGACGGAATACGAAAAGGTCCGGGCGGTGCGGTTCCAGCGCATGTCCGCCGGGGATCGTTCACCAAAACCCAGTCGGCGCCGATTCCACGTGGCAGTAACGAAGAAGCGGATACTGATTGTCTACAGAGGTTTCTGAAGATCAAAGTGAAACAAGTCACAGAATCCGATGGGACCGTATCGGGAACGCTGCTGGTGACACCGAATTGCTTGATGTTCGATCCGGATGTTTCGCATCCGTTGGTGAAGGAGAACGGACCGGATTTGTATGGAATGGTGGCGAAGTGAGGGATTTCATGAATTATTTTTTTGAAAAATCATAAAAATTGATTTCAGTATGGACGAAATTCAGTCAGTGTCGGTGTACAAAGAGATCAGCGGATTGACCGGTGATAAGGAAGAGAAGAAGAGGGATATTTTCGATCCTGARCATTTGAGAACGCCAGAAGATAGTCCAAAGGTAATATCGTCTGAAAATTGAGCTGAAAATCCGGAATTTTCTGAAAGAATGACACAGAATTTGGCTAAAATGAGCTGAAAATCGATTTCAGTCATTTTGGCTTAAAAACAAACGATTTCAGCTAAGTTTTAGTCGAAAAAGTAAATTTTCGCTGGAAAATTGAGCTGAAAATCTGGAATTTTCTGGAATAATGACCCAGAATTTTGAGAATTTTGCTAAAAATCAATTCAAGTCATTTTTCTGAAAATCAATAATTTCAGCTCATTTTTAGTCGAAAAAAACGCATTTTCGGCTGAAAATCTTGAATTTTCTGTAAAGATGAGTCAGAATTTTGAGAATTTTGCTAAAAATCGATTCAAGTCATTTTCGCTGAAAAAATACTATTTCAGTTCTTTTGTAGTCGAAAAAACGCATTTTTGGCTGAAAAAATGAGCTGAAATCTGGAATTTTCTGTAAAAATGACCCAGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTATGGACGAAATTCAGTCAG</pcr_primer_p1>
		<pcr_primer_p2>TTAGCTGAAATCGTTTGTTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGTATGGACGAAATTCAGTCAGTGTCGGTGTACAAAGAGATCAGCGGATTGACCGGTGATAAGGAAGAGAAGAAGAGGGATATTTTCGATCCTGAACATTTGAGAACGCCAGAAGATAGTCCAAAGGTAATATCGTCTGAAAATTGAGCTGAAAATCCGGAATTTTCTGAAAGAATGACACAGAATTTGGCTAAAATGAGCTGAAAATCGATTTCAGTCATTTTGGCTTAAAAACAAACGATTTCAGCTAA</canonical_amplicon>
		<polymorphic_amplicon>AGTATGGACGAAATTCAGTCAGTGTCGGTGTACAAAGAGATCAGCGGATTGACCGGTGATAAGGAAGAGAAGAAGAGGGATATTTTCGATCCTGARCATTTGAGAACGCCAGAAGATAGTCCAAAGGTAATATCGTCTGAAAATTGAGCTGAAAATCCGGAATTTTCTGAAAGAATGACACAGAATTTGGCTAAAATGAGCTGAAAATCGATTTCAGTCATTTTGGCTTAAAAACAAACGATTTCAGCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8762</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>161435</contig_pos>
        <strand>+</strand>
        <context>TTCATGAATT[A/T]TTTTTTTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACGGACCGGATTTGTATGGAATGGTGGCGAAGTGAGGGATTTCATGAATT</left_flank>
        <right_flank>TTTTTTTGAAAAATCATAAAAATTGATTTCAGTATGGACGAAATTCAGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCTGGAAATCAAGTATCGGGGATTGAAAATGCAGGTTTGTAGTGCGCCTGGCAACAACAGCAAGAAAAAAGCAAAAAATATAATGAGAGGGGAGAGAACAAGTGCGCACACACACTTATAAAAGCTCATTTTGTCTTTATAAGTGCGCAGAGCACCAGGAAATGAGAAAAAAGAACAAAGATTGTTTCTTTTCAGAAGACGGAATACGAAAAGGTCCGGGCGGTGCGGTTCCAGCGCATGTCCGCCGGGGATCGTTCACCAAAACCCAGTCGGCGCCGATTCCACGTGGCAGTAACGAAGAAGCGGATACTGATTGTCTACAGAGGTTTCTGAAGATCAAAGTGAAACAAGTCACAGAATCCGATGGGACCGTATCGGGAACGCTGCTGGTGACACCGAATTGCTTGATGTTCGATCCGGATGTTTCGCATCCGTTGGTGAAGGAGAACGGACCGGATTTGTATGGAATGGTGGCGAAGTGAGGGATTTCATGAATTATTTTTTTGAAAAATCATAAAAATTGATTTCAGTATGGACGAAATTCAGTCAGTGTCGGTGTACAAAGAGATCAGCGGATTGACCGGTGATAAGGAAGAGAAGAAGAGGGATATTTTCGATCCTGAACATTTGAGAACGCCAGAAGATAGTCCAAAGGTAATATCGTCTGAAAATTGAGCTGAAAATCCGGAATTTTCTGAAAGAATGACACAGAATTTGGCTAAAATGAGCTGAAAATCGATTTCAGTCATTTTGGCTTAAAAACAAACGATTTCAGCTAAGTTTTAGTCGAAAAAGTAAATTTTCGCTGGAAAATTGAGCTGAAAATCTGGAATTTTCTGGAATAATGACCCAGAATTTTGAGAATTTTGCTAAAAATCAATTCAAGTCATTTTTCTGAAAATCAATAATTTCAGCTCATTTTTAGTCGAAAAAAACGCATTTTCGGCTGAAAATCTTGAATTTTCTGTAAAGATGAGTCAGAATTTTGAGAATTTTGC</canonical>
            <polymorphic>CTTCTGGAAATCAAGTATCGGGGATTGAAAATGCAGGTTTGTAGTGCGCCTGGCAACAACAGCAAGAAAAAAGCAAAAAATATAATGAGAGGGGAGAGAACAAGTGCGCACACACACTTATAAAAGCTCATTTTGTCTTTATAAGTGCGCAGAGCACCAGGAAATGAGAAAAAAGAACAAAGATTGTTTCTTTTCAGAAGACGGAATACGAAAAGGTCCGGGCGGTGCGGTTCCAGCGCATGTCCGCCGGGGATCGTTCACCAAAACCCAGTCGGCGCCGATTCCACGTGGCAGTAACGAAGAAGCGGATACTGATTGTCTACAGAGGTTTCTGAAGATCAAAGTGAAACAAGTCACAGAATCCGATGGGACCGTATCGGGAACGCTGCTGGTGACACCGAATTGCTTGATGTTCGATCCGGATGTTTCGCATCCGTTGGTGAAGGAGAACGGACCGGATTTGTATGGAATGGTGGCGAAGTGAGGGATTTCATGAATTWTTTTTTTGAAAAATCATAAAAATTGATTTCAGTATGGACGAAATTCAGTCAGTGTCGGTGTACAAAGAGATCAGCGGATTGACCGGTGATAAGGAAGAGAAGAAGAGGGATATTTTCGATCCTGAACATTTGAGAACGCCAGAAGATAGTCCAAAGGTAATATCGTCTGAAAATTGAGCTGAAAATCCGGAATTTTCTGAAAGAATGACACAGAATTTGGCTAAAATGAGCTGAAAATCGATTTCAGTCATTTTGGCTTAAAAACAAACGATTTCAGCTAAGTTTTAGTCGAAAAAGTAAATTTTCGCTGGAAAATTGAGCTGAAAATCTGGAATTTTCTGGAATAATGACCCAGAATTTTGAGAATTTTGCTAAAAATCAATTCAAGTCATTTTTCTGAAAATCAATAATTTCAGCTCATTTTTAGTCGAAAAAAACGCATTTTCGGCTGAAAATCTTGAATTTTCTGTAAAGATGAGTCAGAATTTTGAGAATTTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTACAGAGGTTTCTGAAGATCAA</pcr_primer_p1>
		<pcr_primer_p2>CTTTGTACACCGACACTGACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTACAGAGGTTTCTGAAGATCAAAGTGAAACAAGTCACAGAATCCGATGGGACCGTATCGGGAACGCTGCTGGTGACACCGAATTGCTTGATGTTCGATCCGGATGTTTCGCATCCGTTGGTGAAGGAGAACGGACCGGATTTGTATGGAATGGTGGCGAAGTGAGGGATTTCATGAATTATTTTTTTGAAAAATCATAAAAATTGATTTCAGTATGGACGAAATTCAGTCAGTGTCGGTGTACAAAG</canonical_amplicon>
		<polymorphic_amplicon>CTACAGAGGTTTCTGAAGATCAAAGTGAAACAAGTCACAGAATCCGATGGGACCGTATCGGGAACGCTGCTGGTGACACCGAATTGCTTGATGTTCGATCCGGATGTTTCGCATCCGTTGGTGAAGGAGAACGGACCGGATTTGTATGGAATGGTGGCGAAGTGAGGGATTTCATGAATTWTTTTTTTGAAAAATCATAAAAATTGATTTCAGTATGGACGAAATTCAGTCAGTGTCGGTGTACAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8763</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>161401</contig_pos>
        <strand>+</strand>
        <context>CGGATTTGTA[C/T]GGAATGGTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATCCGGATGTTTCGCATCCGTTGGTGAAGGAGAACGGACCGGATTTGTA</left_flank>
        <right_flank>GGAATGGTGGCGAAGTGAGGGATTTCATGAATTATTTTTTTGAAAAATCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGATCCACCCTCTTCCACGTCTTCTTTGAAATCTTCTGGAAATCAAGTATCGGGGATTGAAAATGCAGGTTTGTAGTGCGCCTGGCAACAACAGCAAGAAAAAAGCAAAAAATATAATGAGAGGGGAGAGAACAAGTGCGCACACACACTTATAAAAGCTCATTTTGTCTTTATAAGTGCGCAGAGCACCAGGAAATGAGAAAAAAGAACAAAGATTGTTTCTTTTCAGAAGACGGAATACGAAAAGGTCCGGGCGGTGCGGTTCCAGCGCATGTCCGCCGGGGATCGTTCACCAAAACCCAGTCGGCGCCGATTCCACGTGGCAGTAACGAAGAAGCGGATACTGATTGTCTACAGAGGTTTCTGAAGATCAAAGTGAAACAAGTCACAGAATCCGATGGGACCGTATCGGGAACGCTGCTGGTGACACCGAATTGCTTGATGTTCGATCCGGATGTTTCGCATCCGTTGGTGAAGGAGAACGGACCGGATTTGTATGGAATGGTGGCGAAGTGAGGGATTTCATGAATTATTTTTTTGAAAAATCATAAAAATTGATTTCAGTATGGACGAAATTCAGTCAGTGTCGGTGTACAAAGAGATCAGCGGATTGACCGGTGATAAGGAAGAGAAGAAGAGGGATATTTTCGATCCTGAACATTTGAGAACGCCAGAAGATAGTCCAAAGGTAATATCGTCTGAAAATTGAGCTGAAAATCCGGAATTTTCTGAAAGAATGACACAGAATTTGGCTAAAATGAGCTGAAAATCGATTTCAGTCATTTTGGCTTAAAAACAAACGATTTCAGCTAAGTTTTAGTCGAAAAAGTAAATTTTCGCTGGAAAATTGAGCTGAAAATCTGGAATTTTCTGGAATAATGACCCAGAATTTTGAGAATTTTGCTAAAAATCAATTCAAGTCATTTTTCTGAAAATCAATAATTTCAGCTCATTTTTAGTCGAAAAAAACGCATTTTCGGCTGAAAATCTTGAATTTT</canonical>
            <polymorphic>TTCGATCCACCCTCTTCCACGTCTTCTTTGAAATCTTCTGGAAATCAAGTATCGGGGATTGAAAATGCAGGTTTGTAGTGCGCCTGGCAACAACAGCAAGAAAAAAGCAAAAAATATAATGAGAGGGGAGAGAACAAGTGCGCACACACACTTATAAAAGCTCATTTTGTCTTTATAAGTGCGCAGAGCACCAGGAAATGAGAAAAAAGAACAAAGATTGTTTCTTTTCAGAAGACGGAATACGAAAAGGTCCGGGCGGTGCGGTTCCAGCGCATGTCCGCCGGGGATCGTTCACCAAAACCCAGTCGGCGCCGATTCCACGTGGCAGTAACGAAGAAGCGGATACTGATTGTCTACAGAGGTTTCTGAAGATCAAAGTGAAACAAGTCACAGAATCCGATGGGACCGTATCGGGAACGCTGCTGGTGACACCGAATTGCTTGATGTTCGATCCGGATGTTTCGCATCCGTTGGTGAAGGAGAACGGACCGGATTTGTAYGGAATGGTGGCGAAGTGAGGGATTTCATGAATTATTTTTTTGAAAAATCATAAAAATTGATTTCAGTATGGACGAAATTCAGTCAGTGTCGGTGTACAAAGAGATCAGCGGATTGACCGGTGATAAGGAAGAGAAGAAGAGGGATATTTTCGATCCTGAACATTTGAGAACGCCAGAAGATAGTCCAAAGGTAATATCGTCTGAAAATTGAGCTGAAAATCCGGAATTTTCTGAAAGAATGACACAGAATTTGGCTAAAATGAGCTGAAAATCGATTTCAGTCATTTTGGCTTAAAAACAAACGATTTCAGCTAAGTTTTAGTCGAAAAAGTAAATTTTCGCTGGAAAATTGAGCTGAAAATCTGGAATTTTCTGGAATAATGACCCAGAATTTTGAGAATTTTGCTAAAAATCAATTCAAGTCATTTTTCTGAAAATCAATAATTTCAGCTCATTTTTAGTCGAAAAAAACGCATTTTCGGCTGAAAATCTTGAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTACAGAGGTTTCTGAAGATCAA</pcr_primer_p1>
		<pcr_primer_p2>CTTTGTACACCGACACTGACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTACAGAGGTTTCTGAAGATCAAAGTGAAACAAGTCACAGAATCCGATGGGACCGTATCGGGAACGCTGCTGGTGACACCGAATTGCTTGATGTTCGATCCGGATGTTTCGCATCCGTTGGTGAAGGAGAACGGACCGGATTTGTATGGAATGGTGGCGAAGTGAGGGATTTCATGAATTATTTTTTTGAAAAATCATAAAAATTGATTTCAGTATGGACGAAATTCAGTCAGTGTCGGTGTACAAAG</canonical_amplicon>
		<polymorphic_amplicon>CTACAGAGGTTTCTGAAGATCAAAGTGAAACAAGTCACAGAATCCGATGGGACCGTATCGGGAACGCTGCTGGTGACACCGAATTGCTTGATGTTCGATCCGGATGTTTCGCATCCGTTGGTGAAGGAGAACGGACCGGATTTGTAYGGAATGGTGGCGAAGTGAGGGATTTCATGAATTATTTTTTTGAAAAATCATAAAAATTGATTTCAGTATGGACGAAATTCAGTCAGTGTCGGTGTACAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8764</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>168165</contig_pos>
        <strand>+</strand>
        <context>AGAGGGCAAA[A/G]AATCTTCTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCAGAGGGCAAA</left_flank>
        <right_flank>AATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGAACCCATCACGGCCGAAAAGTTCTCTATCTGTATCTCGTGATGATTATTTTCTCTCATCTTCAAAGAATCATCGCTATCACCGTCGTCACGTCTTCAAAAGAAGTCTTCTTCTTCTTTCTTTTCGCTATCTCTTTTCAATCATCGACCATTGTCCACCTTCTGTTTTACACCCATCATTATCAGTTATCACTTCTTGGCAAAAAAGACAATGACCAGTTGCATGTCCTTTTTTGTGTCTTTGTTCATCGCTTGTATATTGGAAATGTTGTCAAACAGCTGACATTGTTTTAGTATCTGCTACAGTAACCCTCTTTTTTCTAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTTCAAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGATCACTTGATTCCTATCATCATCTGACACCGCGAACCTATTCTGAACCCCCCATCAAAAAGAGATTCCAGGAGAGAACAACAACAAAATCATAAAGTGCCACGTGGCAAAAAGTTTTCAAAACATGCGCGGTCTCTTTAATGATG</canonical>
            <polymorphic>GAAGAACCCATCACGGCCGAAAAGTTCTCTATCTGTATCTCGTGATGATTATTTTCTCTCATCTTCAAAGAATCATCGCTATCACCGTCGTCACGTCTTCAAAAGAAGTCTTCTTCTTCTTTCTTTTCGCTATCTCTTTTCAATCATCGACCATTGTCCACCTTCTGTTTTACACCCATCATTATCAGTTATCACTTCTTGGCAAAAAAGACAATGACCAGTTGCATGTCCTTTTTTGTGTCTTTGTTCATCGCTTGTATATTGGAAATGTTGTCAAACAGCTGACATTGTTTTAGTATCTGCTACAGTAACCCTCTTTTTTCTAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTTCAAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCAGAGGGCAAARAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGATCACTTGATTCCTATCATCATCTGACACCGCGAACCTATTCTGAACCCCCCATCAAAAAGAGATTCCAGGAGAGAACAACAACAAAATCATAAAGTGCCACGTGGCAAAAAGTTTTCAAAACATGCGCGGTCTCTTTAATGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCGTCTCCTATTCTCTAGC</pcr_primer_p1>
		<pcr_primer_p2>AAAGATCAGAAGACTTTTTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>420</pcr_amplicon_size>
		<canonical_amplicon>TGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTT</canonical_amplicon>
		<polymorphic_amplicon>TGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCAGAGGGCAAARAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8765</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>168186</contig_pos>
        <strand>+</strand>
        <context>AAACTCCTAG[A/G]TCCGTATATa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTCCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAG</left_flank>
        <right_flank>TCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTTCTCTATCTGTATCTCGTGATGATTATTTTCTCTCATCTTCAAAGAATCATCGCTATCACCGTCGTCACGTCTTCAAAAGAAGTCTTCTTCTTCTTTCTTTTCGCTATCTCTTTTCAATCATCGACCATTGTCCACCTTCTGTTTTACACCCATCATTATCAGTTATCACTTCTTGGCAAAAAAGACAATGACCAGTTGCATGTCCTTTTTTGTGTCTTTGTTCATCGCTTGTATATTGGAAATGTTGTCAAACAGCTGACATTGTTTTAGTATCTGCTACAGTAACCCTCTTTTTTCTAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTTCAAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGATCACTTGATTCCTATCATCATCTGACACCGCGAACCTATTCTGAACCCCCCATCAAAAAGAGATTCCAGGAGAGAACAACAACAAAATCATAAAGTGCCACGTGGCAAAAAGTTTTCAAAACATGCGCGGTCTCTTTAATGATGCAAATTGGGTAACAATTTCGA</canonical>
            <polymorphic>AAGTTCTCTATCTGTATCTCGTGATGATTATTTTCTCTCATCTTCAAAGAATCATCGCTATCACCGTCGTCACGTCTTCAAAAGAAGTCTTCTTCTTCTTTCTTTTCGCTATCTCTTTTCAATCATCGACCATTGTCCACCTTCTGTTTTACACCCATCATTATCAGTTATCACTTCTTGGCAAAAAAGACAATGACCAGTTGCATGTCCTTTTTTGTGTCTTTGTTCATCGCTTGTATATTGGAAATGTTGTCAAACAGCTGACATTGTTTTAGTATCTGCTACAGTAACCCTCTTTTTTCTAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTTCAAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGRTCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGATCACTTGATTCCTATCATCATCTGACACCGCGAACCTATTCTGAACCCCCCATCAAAAAGAGATTCCAGGAGAGAACAACAACAAAATCATAAAGTGCCACGTGGCAAAAAGTTTTCAAAACATGCGCGGTCTCTTTAATGATGCAAATTGGGTAACAATTTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>498 224 167 87 24</canonical_bands>
                <polymorphic_bands>722 167 87 24</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTCCTTTGTTCTACCTTCAG</pcr_primer_p1>
		<pcr_primer_p2>AAAGATCAGAAGACTTTTTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>367</pcr_amplicon_size>
		<canonical_amplicon>GGTCCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTT</canonical_amplicon>
		<polymorphic_amplicon>GGTCCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGRTCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8766</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>168414</contig_pos>
        <strand>+</strand>
        <context>aGAATGATCA[C/T]GGWGTATAAM</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCA</left_flank>
        <right_flank>GGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGCTTGTATATTGGAAATGTTGTCAAACAGCTGACATTGTTTTAGTATCTGCTACAGTAACCCTCTTTTTTCTAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTTCAAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGATCACTTGATTCCTATCATCATCTGACACCGCGAACCTATTCTGAACCCCCCATCAAAAAGAGATTCCAGGAGAGAACAACAACAAAATCATAAAGTGCCACGTGGCAAAAAGTTTTCAAAACATGCGCGGTCTCTTTAATGATGCAAATTGGGTAACAATTTCGAAATGTTTGAACTCTTCTCACTTTCCGATTGGTAATGATCATACTCGCCCCCACCTTTATACAGCCCGGTGCATCATCTCTAATCTTGTGTGCGCGCGCGTATTTTTAAAAATGCATCCAACAGTTGGATTCCGACTCTGACCATATGATGATTTGAACTTGAAATCCCCTGCGTTGCTACTAGAATAACTATGTCCCCGATGTTATTTAGGTAATCCGCGATGGGCGG</canonical>
            <polymorphic>ATCGCTTGTATATTGGAAATGTTGTCAAACAGCTGACATTGTTTTAGTATCTGCTACAGTAACCCTCTTTTTTCTAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTTCAAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCAYGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGATCACTTGATTCCTATCATCATCTGACACCGCGAACCTATTCTGAACCCCCCATCAAAAAGAGATTCCAGGAGAGAACAACAACAAAATCATAAAGTGCCACGTGGCAAAAAGTTTTCAAAACATGCGCGGTCTCTTTAATGATGCAAATTGGGTAACAATTTCGAAATGTTTGAACTCTTCTCACTTTCCGATTGGTAATGATCATACTCGCCCCCACCTTTATACAGCCCGGTGCATCATCTCTAATCTTGTGTGCGCGCGCGTATTTTTAAAAATGCATCCAACAGTTGGATTCCGACTCTGACCATATGATGATTTGAACTTGAAATCCCCTGCGTTGCTACTAGAATAACTATGTCCCCGATGTTATTTAGGTAATCCGCGATGGGCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>176 137 131 97 83 80 70 43 42 33 24 20 19 18 14 4 4 3 2</canonical_bands>
                <polymorphic_bands>176 137 131 97 83 80 70 43 42 34 33 24 19 18 4 4 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTTGTTCTACCTTCAGAGG</pcr_primer_p1>
		<pcr_primer_p2>AAAGATCAGAAGACTTTTTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>364</pcr_amplicon_size>
		<canonical_amplicon>CCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTT</canonical_amplicon>
		<polymorphic_amplicon>CCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCAYGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8767</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>168417</contig_pos>
        <strand>+</strand>
        <context>ATGATCAYGG[A/T]GTATAAMGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGG</left_flank>
        <right_flank>GTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTGTATATTGGAAATGTTGTCAAACAGCTGACATTGTTTTAGTATCTGCTACAGTAACCCTCTTTTTTCTAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTTCAAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGATCACTTGATTCCTATCATCATCTGACACCGCGAACCTATTCTGAACCCCCCATCAAAAAGAGATTCCAGGAGAGAACAACAACAAAATCATAAAGTGCCACGTGGCAAAAAGTTTTCAAAACATGCGCGGTCTCTTTAATGATGCAAATTGGGTAACAATTTCGAAATGTTTGAACTCTTCTCACTTTCCGATTGGTAATGATCATACTCGCCCCCACCTTTATACAGCCCGGTGCATCATCTCTAATCTTGTGTGCGCGCGCGTATTTTTAAAAATGCATCCAACAGTTGGATTCCGACTCTGACCATATGATGATTTGAACTTGAAATCCCCTGCGTTGCTACTAGAATAACTATGTCCCCGATGTTATTTAGGTAATCCGCGATGGGCGGAGC</canonical>
            <polymorphic>GCTTGTATATTGGAAATGTTGTCAAACAGCTGACATTGTTTTAGTATCTGCTACAGTAACCCTCTTTTTTCTAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTTCAAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGWGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGATCACTTGATTCCTATCATCATCTGACACCGCGAACCTATTCTGAACCCCCCATCAAAAAGAGATTCCAGGAGAGAACAACAACAAAATCATAAAGTGCCACGTGGCAAAAAGTTTTCAAAACATGCGCGGTCTCTTTAATGATGCAAATTGGGTAACAATTTCGAAATGTTTGAACTCTTCTCACTTTCCGATTGGTAATGATCATACTCGCCCCCACCTTTATACAGCCCGGTGCATCATCTCTAATCTTGTGTGCGCGCGCGTATTTTTAAAAATGCATCCAACAGTTGGATTCCGACTCTGACCATATGATGATTTGAACTTGAAATCCCCTGCGTTGCTACTAGAATAACTATGTCCCCGATGTTATTTAGGTAATCCGCGATGGGCGGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTTGTTCTACCTTCAGAGG</pcr_primer_p1>
		<pcr_primer_p2>AAAGATCAGAAGACTTTTTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>364</pcr_amplicon_size>
		<canonical_amplicon>CCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTT</canonical_amplicon>
		<polymorphic_amplicon>CCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGWGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8768</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>168424</contig_pos>
        <strand>+</strand>
        <context>YGGWGTATAA[A/C]GCACTCTTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAA</left_flank>
        <right_flank>GCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTGGAAATGTTGTCAAACAGCTGACATTGTTTTAGTATCTGCTACAGTAACCCTCTTTTTTCTAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTTCAAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGATCACTTGATTCCTATCATCATCTGACACCGCGAACCTATTCTGAACCCCCCATCAAAAAGAGATTCCAGGAGAGAACAACAACAAAATCATAAAGTGCCACGTGGCAAAAAGTTTTCAAAACATGCGCGGTCTCTTTAATGATGCAAATTGGGTAACAATTTCGAAATGTTTGAACTCTTCTCACTTTCCGATTGGTAATGATCATACTCGCCCCCACCTTTATACAGCCCGGTGCATCATCTCTAATCTTGTGTGCGCGCGCGTATTTTTAAAAATGCATCCAACAGTTGGATTCCGACTCTGACCATATGATGATTTGAACTTGAAATCCCCTGCGTTGCTACTAGAATAACTATGTCCCCGATGTTATTTAGGTAATCCGCGATGGGCGGAGCCTCATTT</canonical>
            <polymorphic>TATTGGAAATGTTGTCAAACAGCTGACATTGTTTTAGTATCTGCTACAGTAACCCTCTTTTTTCTAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTTCAAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAAMGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGATCACTTGATTCCTATCATCATCTGACACCGCGAACCTATTCTGAACCCCCCATCAAAAAGAGATTCCAGGAGAGAACAACAACAAAATCATAAAGTGCCACGTGGCAAAAAGTTTTCAAAACATGCGCGGTCTCTTTAATGATGCAAATTGGGTAACAATTTCGAAATGTTTGAACTCTTCTCACTTTCCGATTGGTAATGATCATACTCGCCCCCACCTTTATACAGCCCGGTGCATCATCTCTAATCTTGTGTGCGCGCGCGTATTTTTAAAAATGCATCCAACAGTTGGATTCCGACTCTGACCATATGATGATTTGAACTTGAAATCCCCTGCGTTGCTACTAGAATAACTATGTCCCCGATGTTATTTAGGTAATCCGCGATGGGCGGAGCCTCATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTTGTTCTACCTTCAGAGG</pcr_primer_p1>
		<pcr_primer_p2>AAAGATCAGAAGACTTTTTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>364</pcr_amplicon_size>
		<canonical_amplicon>CCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTT</canonical_amplicon>
		<polymorphic_amplicon>CCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAAMGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8769</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>168450</contig_pos>
        <strand>+</strand>
        <context>TTCAATTTCC[G/T]YCTATTCCCC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCC</left_flank>
        <right_flank>CCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTGTTTTAGTATCTGCTACAGTAACCCTCTTTTTTCTAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTTCAAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGATCACTTGATTCCTATCATCATCTGACACCGCGAACCTATTCTGAACCCCCCATCAAAAAGAGATTCCAGGAGAGAACAACAACAAAATCATAAAGTGCCACGTGGCAAAAAGTTTTCAAAACATGCGCGGTCTCTTTAATGATGCAAATTGGGTAACAATTTCGAAATGTTTGAACTCTTCTCACTTTCCGATTGGTAATGATCATACTCGCCCCCACCTTTATACAGCCCGGTGCATCATCTCTAATCTTGTGTGCGCGCGCGTATTTTTAAAAATGCATCCAACAGTTGGATTCCGACTCTGACCATATGATGATTTGAACTTGAAATCCCCTGCGTTGCTACTAGAATAACTATGTCCCCGATGTTATTTAGGTAATCCGCGATGGGCGGAGCCTCATTTTTTGGGGATAAAAAAAGGAAGATTTC</canonical>
            <polymorphic>CATTGTTTTAGTATCTGCTACAGTAACCCTCTTTTTTCTAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTTCAAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCKCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGATCACTTGATTCCTATCATCATCTGACACCGCGAACCTATTCTGAACCCCCCATCAAAAAGAGATTCCAGGAGAGAACAACAACAAAATCATAAAGTGCCACGTGGCAAAAAGTTTTCAAAACATGCGCGGTCTCTTTAATGATGCAAATTGGGTAACAATTTCGAAATGTTTGAACTCTTCTCACTTTCCGATTGGTAATGATCATACTCGCCCCCACCTTTATACAGCCCGGTGCATCATCTCTAATCTTGTGTGCGCGCGCGTATTTTTAAAAATGCATCCAACAGTTGGATTCCGACTCTGACCATATGATGATTTGAACTTGAAATCCCCTGCGTTGCTACTAGAATAACTATGTCCCCGATGTTATTTAGGTAATCCGCGATGGGCGGAGCCTCATTTTTTGGGGATAAAAAAAGGAAGATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTTGTTCTACCTTCAGAGG</pcr_primer_p1>
		<pcr_primer_p2>ATCAAAAAGTACCCCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>384</pcr_amplicon_size>
		<canonical_amplicon>CCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGAT</canonical_amplicon>
		<polymorphic_amplicon>CCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCKCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8770</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>168451</contig_pos>
        <strand>+</strand>
        <context>TCAATTTCCK[C/T]CTATTCCCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCT</left_flank>
        <right_flank>CTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTT</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGTTTTAGTATCTGCTACAGTAACCCTCTTTTTTCTAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTTCAAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGATCACTTGATTCCTATCATCATCTGACACCGCGAACCTATTCTGAACCCCCCATCAAAAAGAGATTCCAGGAGAGAACAACAACAAAATCATAAAGTGCCACGTGGCAAAAAGTTTTCAAAACATGCGCGGTCTCTTTAATGATGCAAATTGGGTAACAATTTCGAAATGTTTGAACTCTTCTCACTTTCCGATTGGTAATGATCATACTCGCCCCCACCTTTATACAGCCCGGTGCATCATCTCTAATCTTGTGTGCGCGCGCGTATTTTTAAAAATGCATCCAACAGTTGGATTCCGACTCTGACCATATGATGATTTGAACTTGAAATCCCCTGCGTTGCTACTAGAATAACTATGTCCCCGATGTTATTTAGGTAATCCGCGATGGGCGGAGCCTCATTTTTTGGGGATAAAAAAAGGAAGATTTCT</canonical>
            <polymorphic>ATTGTTTTAGTATCTGCTACAGTAACCCTCTTTTTTCTAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTTCAAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTYCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGATCACTTGATTCCTATCATCATCTGACACCGCGAACCTATTCTGAACCCCCCATCAAAAAGAGATTCCAGGAGAGAACAACAACAAAATCATAAAGTGCCACGTGGCAAAAAGTTTTCAAAACATGCGCGGTCTCTTTAATGATGCAAATTGGGTAACAATTTCGAAATGTTTGAACTCTTCTCACTTTCCGATTGGTAATGATCATACTCGCCCCCACCTTTATACAGCCCGGTGCATCATCTCTAATCTTGTGTGCGCGCGCGTATTTTTAAAAATGCATCCAACAGTTGGATTCCGACTCTGACCATATGATGATTTGAACTTGAAATCCCCTGCGTTGCTACTAGAATAACTATGTCCCCGATGTTATTTAGGTAATCCGCGATGGGCGGAGCCTCATTTTTTGGGGATAAAAAAAGGAAGATTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTTGTTCTACCTTCAGAGG</pcr_primer_p1>
		<pcr_primer_p2>ATCAAAAAGTACCCCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>384</pcr_amplicon_size>
		<canonical_amplicon>CCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGAT</canonical_amplicon>
		<polymorphic_amplicon>CCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTYCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8771</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>168466</contig_pos>
        <strand>+</strand>
        <context>TCCCCAAACC[A/G]CCATTTTTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACC</left_flank>
        <right_flank>CCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTACAGTAACCCTCTTTTTTCTAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTTCAAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGATCACTTGATTCCTATCATCATCTGACACCGCGAACCTATTCTGAACCCCCCATCAAAAAGAGATTCCAGGAGAGAACAACAACAAAATCATAAAGTGCCACGTGGCAAAAAGTTTTCAAAACATGCGCGGTCTCTTTAATGATGCAAATTGGGTAACAATTTCGAAATGTTTGAACTCTTCTCACTTTCCGATTGGTAATGATCATACTCGCCCCCACCTTTATACAGCCCGGTGCATCATCTCTAATCTTGTGTGCGCGCGCGTATTTTTAAAAATGCATCCAACAGTTGGATTCCGACTCTGACCATATGATGATTTGAACTTGAAATCCCCTGCGTTGCTACTAGAATAACTATGTCCCCGATGTTATTTAGGTAATCCGCGATGGGCGGAGCCTCATTTTTTGGGGATAAAAAAAGGAAGATTTCTAGGCCACCAAGTTTT</canonical>
            <polymorphic>GCTACAGTAACCCTCTTTTTTCTAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTTCAAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCRCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGATCACTTGATTCCTATCATCATCTGACACCGCGAACCTATTCTGAACCCCCCATCAAAAAGAGATTCCAGGAGAGAACAACAACAAAATCATAAAGTGCCACGTGGCAAAAAGTTTTCAAAACATGCGCGGTCTCTTTAATGATGCAAATTGGGTAACAATTTCGAAATGTTTGAACTCTTCTCACTTTCCGATTGGTAATGATCATACTCGCCCCCACCTTTATACAGCCCGGTGCATCATCTCTAATCTTGTGTGCGCGCGCGTATTTTTAAAAATGCATCCAACAGTTGGATTCCGACTCTGACCATATGATGATTTGAACTTGAAATCCCCTGCGTTGCTACTAGAATAACTATGTCCCCGATGTTATTTAGGTAATCCGCGATGGGCGGAGCCTCATTTTTTGGGGATAAAAAAAGGAAGATTTCTAGGCCACCAAGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>498 353 85 56 8</canonical_bands>
                <polymorphic_bands>583 353 56 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTTGTTCTACCTTCAGAGG</pcr_primer_p1>
		<pcr_primer_p2>ATCAAAAAGTACCCCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>384</pcr_amplicon_size>
		<canonical_amplicon>CCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGAT</canonical_amplicon>
		<polymorphic_amplicon>CCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCRCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8772</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>172434</contig_pos>
        <strand>+</strand>
        <context>AATCTACAGT[A/G]TTCTGAAACT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTCGTGGCATGTTCATATGACATTTTTTGTACTTTCTAAAATCTACAGT</left_flank>
        <right_flank>TTCTGAAACTTCCGTTCTGCTCGTTACTCTCTTATCTAATCGCATCCTTA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATCCTATTTCCGGCGGTAACAAAGTTCTTATTCACCACCTTGTTTATGCCAGAAATTTGGTGTTGTTTCTAGAAAAGGTCAAGTGTGGTTGAAGGCCTAAAAACACCGAAACTCGATTTCTTGAGACAATGAAAGTTCCACGTGTCACTATCCTTCCACAATTTACGACTTTTACGGTACCGTCCAACCTTTGATTCTGTTCTAATTCGATGTCAACAAATCAAGAATTAGTGGGGTCGTCTTGTTCTTATTCTTAAAACTCTCCTGACAACTTATATCAGAGATAAGAGATTCATAGTAGGATTACCTCTGCCCACACACTCATATGAGACTATAAGCTGACCTGAAAACGCCCGCCTCATTGTCGATGATGTTCCTGTATAAAAGTAACTGTATATTTTGTACTTTTCAACTGATAAAAATTGCATATTCAAATTTTCGACACATCTCGTGGCATGTTCATATGACATTTTTTGTACTTTCTAAAATCTACAGTGTTCTGAAACTTCCGTTCTGCTCGTTACTCTCTTATCTAATCGCATCCTTATCATTATCTCTCTTTATAAGTTCTCCTAATTTTTTAGCCACTCTCACACACAAAACCACCACTCACACCCAATTATGGGCGCCAACGAGTCTGCCAATTTGCACACCGACGACGGAACGATCCCGATCAGAAGACGTGCACACACATCGTACACCAGAAGTCCGCCTGACTATTTCGGTTCGAATCCCCAACGAAAAACTAGTCAGAATCAGATGAACCTCCAAAACAACAACAACAACAATGATGAGAAACACAAGAACTCCAACAACACGATTCTCACCGAATTCGATGTGAAACAGATGATGGCACGCAGTCGCGCTGGAACGGTTTGTGTATCCTCGATTCGACGTCAGTCTTCTGAAGACGCCGAGAAGACGATTCTGGAGACGGTTCGTCAGGCAACACCAACTTCAGATGACGAATCGACTGGAATGTCGAAGAAGGGAAGCA</canonical>
            <polymorphic>AAAATCCTATTTCCGGCGGTAACAAAGTTCTTATTCACCACCTTGTTTATGCCAGAAATTTGGTGTTGTTTCTAGAAAAGGTCAAGTGTGGTTGAAGGCCTAAAAACACCGAAACTCGATTTCTTGAGACAATGAAAGTTCCACGTGTCACTATCCTTCCACAATTTACGACTTTTACGGTACCGTCCAACCTTTGATTCTGTTCTAATTCGATGTCAACAAATCAAGAATTAGTGGGGTCGTCTTGTTCTTATTCTTAAAACTCTCCTGACAACTTATATCAGAGATAAGAGATTCATAGTAGGATTACCTCTGCCCACACACTCATATGAGACTATAAGCTGACCTGAAAACGCCCGCCTCATTGTCGATGATGTTCCTGTATAAAAGTAACTGTATATTTTGTACTTTTCAACTGATAAAAATTGCATATTCAAATTTTCGACACATCTCGTGGCATGTTCATATGACATTTTTTGTACTTTCTAAAATCTACAGTRTTCTGAAACTTCCGTTCTGCTCGTTACTCTCTTATCTAATCGCATCCTTATCATTATCTCTCTTTATAAGTTCTCCTAATTTTTTAGCCACTCTCACACACAAAACCACCACTCACACCCAATTATGGGCGCCAACGAGTCTGCCAATTTGCACACCGACGACGGAACGATCCCGATCAGAAGACGTGCACACACATCGTACACCAGAAGTCCGCCTGACTATTTCGGTTCGAATCCCCAACGAAAAACTAGTCAGAATCAGATGAACCTCCAAAACAACAACAACAACAATGATGAGAAACACAAGAACTCCAACAACACGATTCTCACCGAATTCGATGTGAAACAGATGATGGCACGCAGTCGCGCTGGAACGGTTTGTGTATCCTCGATTCGACGTCAGTCTTCTGAAGACGCCGAGAAGACGATTCTGGAGACGGTTCGTCAGGCAACACCAACTTCAGATGACGAATCGACTGGAATGTCGAAGAAGGGAAGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>124 100 90 83 75 71 46 44 37 36 35 33 25 25 23 18 17 15 14 11 9 9 9 8 6 4 4 3 3 3 2 2 2 2 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>134 124 100 83 75 71 46 37 36 35 33 25 25 23 18 17 15 14 11 9 9 9 8 6 4 4 3 3 3 2 2 2 2 2 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAGACTATAAGCTGACCTGAA</pcr_primer_p1>
		<pcr_primer_p2>AGATAATGATAAGGATGCGATTA</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>ATGAGACTATAAGCTGACCTGAAAACGCCCGCCTCATTGTCGATGATGTTCCTGTATAAAAGTAACTGTATATTTTGTACTTTTCAACTGATAAAAATTGCATATTCAAATTTTCGACACATCTCGTGGCATGTTCATATGACATTTTTTGTACTTTCTAAAATCTACAGTGTTCTGAAACTTCCGTTCTGCTCGTTACTCTCTTATCTAATCGCATCCTTATCATTATCT</canonical_amplicon>
		<polymorphic_amplicon>ATGAGACTATAAGCTGACCTGAAAACGCCCGCCTCATTGTCGATGATGTTCCTGTATAAAAGTAACTGTATATTTTGTACTTTTCAACTGATAAAAATTGCATATTCAAATTTTCGACACATCTCGTGGCATGTTCATATGACATTTTTTGTACTTTCTAAAATCTACAGTRTTCTGAAACTTCCGTTCTGCTCGTTACTCTCTTATCTAATCGCATCCTTATCATTATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8773</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>172219</contig_pos>
        <strand>+</strand>
        <context>CTTATATCAG[A/T]GATAAGAGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGGGGTCGTCTTGTTCTTATTCTTAAAACTCTCCTGACAACTTATATCAG</left_flank>
        <right_flank>GATAAGAGATTCATAGTAGGATTACCTCTGCCCACACACTCATATGAGAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAGTGATCGGAAACAGGACATGCGAGCTCTAGGCTTCCGGTCAAAATGGACGGCACTGTAGGCCTAAAATACGACGAAAACTGAAATTGATATATCGTTTTGAAACAATATAACAAAACGATATGATTCATTTTCAATATTACAGTAGTACAGTGCACATGTACTATAATAATATGACTCTTGAAACTGGTCAAAATGGCCGAAAATCTACTGAAAATCCTATTTCCGGCGGTAACAAAGTTCTTATTCACCACCTTGTTTATGCCAGAAATTTGGTGTTGTTTCTAGAAAAGGTCAAGTGTGGTTGAAGGCCTAAAAACACCGAAACTCGATTTCTTGAGACAATGAAAGTTCCACGTGTCACTATCCTTCCACAATTTACGACTTTTACGGTACCGTCCAACCTTTGATTCTGTTCTAATTCGATGTCAACAAATCAAGAATTAGTGGGGTCGTCTTGTTCTTATTCTTAAAACTCTCCTGACAACTTATATCAGAGATAAGAGATTCATAGTAGGATTACCTCTGCCCACACACTCATATGAGACTATAAGCTGACCTGAAAACGCCCGCCTCATTGTCGATGATGTTCCTGTATAAAAGTAACTGTATATTTTGTACTTTTCAACTGATAAAAATTGCATATTCAAATTTTCGACACATCTCGTGGCATGTTCATATGACATTTTTTGTACTTTCTAAAATCTACAGTGTTCTGAAACTTCCGTTCTGCTCGTTACTCTCTTATCTAATCGCATCCTTATCATTATCTCTCTTTATAAGTTCTCCTAATTTTTTAGCCACTCTCACACACAAAACCACCACTCACACCCAATTATGGGCGCCAACGAGTCTGCCAATTTGCACACCGACGACGGAACGATCCCGATCAGAAGACGTGCACACACATCGTACACCAGAAGTCCGCCTGACTATTTCGGTTCGAATCCCCAACGAAAAACTAGTCAGAATCAGATGAACCTCCAAAACAACAACAA</canonical>
            <polymorphic>CAAAGTGATCGGAAACAGGACATGCGAGCTCTAGGCTTCCGGTCAAAATGGACGGCACTGTAGGCCTAAAATACGACGAAAACTGAAATTGATATATCGTTTTGAAACAATATAACAAAACGATATGATTCATTTTCAATATTACAGTAGTACAGTGCACATGTACTATAATAATATGACTCTTGAAACTGGTCAAAATGGCCGAAAATCTACTGAAAATCCTATTTCCGGCGGTAACAAAGTTCTTATTCACCACCTTGTTTATGCCAGAAATTTGGTGTTGTTTCTAGAAAAGGTCAAGTGTGGTTGAAGGCCTAAAAACACCGAAACTCGATTTCTTGAGACAATGAAAGTTCCACGTGTCACTATCCTTCCACAATTTACGACTTTTACGGTACCGTCCAACCTTTGATTCTGTTCTAATTCGATGTCAACAAATCAAGAATTAGTGGGGTCGTCTTGTTCTTATTCTTAAAACTCTCCTGACAACTTATATCAGWGATAAGAGATTCATAGTAGGATTACCTCTGCCCACACACTCATATGAGACTATAAGCTGACCTGAAAACGCCCGCCTCATTGTCGATGATGTTCCTGTATAAAAGTAACTGTATATTTTGTACTTTTCAACTGATAAAAATTGCATATTCAAATTTTCGACACATCTCGTGGCATGTTCATATGACATTTTTTGTACTTTCTAAAATCTACAGTGTTCTGAAACTTCCGTTCTGCTCGTTACTCTCTTATCTAATCGCATCCTTATCATTATCTCTCTTTATAAGTTCTCCTAATTTTTTAGCCACTCTCACACACAAAACCACCACTCACACCCAATTATGGGCGCCAACGAGTCTGCCAATTTGCACACCGACGACGGAACGATCCCGATCAGAAGACGTGCACACACATCGTACACCAGAAGTCCGCCTGACTATTTCGGTTCGAATCCCCAACGAAAAACTAGTCAGAATCAGATGAACCTCCAAAACAACAACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>487 221 175 76 24 11 6</canonical_bands>
                <polymorphic_bands>708 175 76 24 11 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCACTATCCTTCCACAATTTAC</pcr_primer_p1>
		<pcr_primer_p2>CAGTTACTTTTATACAGGAACATCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCACTATCCTTCCACAATTTACGACTTTTACGGTACCGTCCAACCTTTGATTCTGTTCTAATTCGATGTCAACAAATCAAGAATTAGTGGGGTCGTCTTGTTCTTATTCTTAAAACTCTCCTGACAACTTATATCAGAGATAAGAGATTCATAGTAGGATTACCTCTGCCCACACACTCATATGAGACTATAAGCTGACCTGAAAACGCCCGCCTCATTGTCGATGATGTTCCTGTATAAAAGTAACTG</canonical_amplicon>
		<polymorphic_amplicon>GTCACTATCCTTCCACAATTTACGACTTTTACGGTACCGTCCAACCTTTGATTCTGTTCTAATTCGATGTCAACAAATCAAGAATTAGTGGGGTCGTCTTGTTCTTATTCTTAAAACTCTCCTGACAACTTATATCAGWGATAAGAGATTCATAGTAGGATTACCTCTGCCCACACACTCATATGAGACTATAAGCTGACCTGAAAACGCCCGCCTCATTGTCGATGATGTTCCTGTATAAAAGTAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8774</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>172140</contig_pos>
        <strand>+</strand>
        <context>GATTCTGTTY[G/T]AATTCGATGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTCCACAATTTACGACTTTTACGGTACCGTCCAACCTTTGATTCTGTTC</left_flank>
        <right_flank>AATTCGATGTCAACAAATCAAGAATTAGTGGGGTCGTCTTGTTCTTATTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGCAAACAAGGAATTTTCAAAAAATTCTGTAAATACAAAGTTTTAAATCTAGGTCTGTTTTACACTTTCCAAAATTTTCAAAGTGATCGGAAACAGGACATGCGAGCTCTAGGCTTCCGGTCAAAATGGACGGCACTGTAGGCCTAAAATACGACGAAAACTGAAATTGATATATCGTTTTGAAACAATATAACAAAACGATATGATTCATTTTCAATATTACAGTAGTACAGTGCACATGTACTATAATAATATGACTCTTGAAACTGGTCAAAATGGCCGAAAATCTACTGAAAATCCTATTTCCGGCGGTAACAAAGTTCTTATTCACCACCTTGTTTATGCCAGAAATTTGGTGTTGTTTCTAGAAAAGGTCAAGTGTGGTTGAAGGCCTAAAAACACCGAAACTCGATTTCTTGAGACAATGAAAGTTCCACGTGTCACTATCCTTCCACAATTTACGACTTTTACGGTACCGTCCAACCTTTGATTCTGTTCTAATTCGATGTCAACAAATCAAGAATTAGTGGGGTCGTCTTGTTCTTATTCTTAAAACTCTCCTGACAACTTATATCAGAGATAAGAGATTCATAGTAGGATTACCTCTGCCCACACACTCATATGAGACTATAAGCTGACCTGAAAACGCCCGCCTCATTGTCGATGATGTTCCTGTATAAAAGTAACTGTATATTTTGTACTTTTCAACTGATAAAAATTGCATATTCAAATTTTCGACACATCTCGTGGCATGTTCATATGACATTTTTTGTACTTTCTAAAATCTACAGTGTTCTGAAACTTCCGTTCTGCTCGTTACTCTCTTATCTAATCGCATCCTTATCATTATCTCTCTTTATAAGTTCTCCTAATTTTTTAGCCACTCTCACACACAAAACCACCACTCACACCCAATTATGGGCGCCAACGAGTCTGCCAATTTGCACACCGACGACGGAACGATCCCGATCAGAAGACGTGCACACACATCGTACACCA</canonical>
            <polymorphic>GGGCAAACAAGGAATTTTCAAAAAATTCTGTAAATACAAAGTTTTAAATCTAGGTCTGTTTTACACTTTCCAAAATTTTCAAAGTGATCGGAAACAGGACATGCGAGCTCTAGGCTTCCGGTCAAAATGGACGGCACTGTAGGCCTAAAATACGACGAAAACTGAAATTGATATATCGTTTTGAAACAATATAACAAAACGATATGATTCATTTTCAATATTACAGTAGTACAGTGCACATGTACTATAATAATATGACTCTTGAAACTGGTCAAAATGGCCGAAAATCTACTGAAAATCCTATTTCCGGCGGTAACAAAGTTCTTATTCACCACCTTGTTTATGCCAGAAATTTGGTGTTGTTTCTAGAAAAGGTCAAGTGTGGTTGAAGGCCTAAAAACACCGAAACTCGATTTCTTGAGACAATGAAAGTTCCACGTGTCACTATCCTTCCACAATTTACGACTTTTACGGTACCGTCCAACCTTTGATTCTGTTCKAATTCGATGTCAACAAATCAAGAATTAGTGGGGTCGTCTTGTTCTTATTCTTAAAACTCTCCTGACAACTTATATCAGAGATAAGAGATTCATAGTAGGATTACCTCTGCCCACACACTCATATGAGACTATAAGCTGACCTGAAAACGCCCGCCTCATTGTCGATGATGTTCCTGTATAAAAGTAACTGTATATTTTGTACTTTTCAACTGATAAAAATTGCATATTCAAATTTTCGACACATCTCGTGGCATGTTCATATGACATTTTTTGTACTTTCTAAAATCTACAGTGTTCTGAAACTTCCGTTCTGCTCGTTACTCTCTTATCTAATCGCATCCTTATCATTATCTCTCTTTATAAGTTCTCCTAATTTTTTAGCCACTCTCACACACAAAACCACCACTCACACCCAATTATGGGCGCCAACGAGTCTGCCAATTTGCACACCGACGACGGAACGATCCCGATCAGAAGACGTGCACACACATCGTACACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCTTATTCACCACCTTGTTTA</pcr_primer_p1>
		<pcr_primer_p2>GTTGTCAGGAGAGTTTTAAGAATAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTCTTATTCACCACCTTGTTTATGCCAGAAATTTGGTGTTGTTTCTAGAAAAGGTCAAGTGTGGTTGAAGGCCTAAAAACACCGAAACTCGATTTCTTGAGACAATGAAAGTTCCACGTGTCACTATCCTTCCACAATTTACGACTTTTACGGTACCGTCCAACCTTTGATTCTGTTCTAATTCGATGTCAACAAATCAAGAATTAGTGGGGTCGTCTTGTTCTTATTCTTAAAACTCTCCTGACAAC</canonical_amplicon>
		<polymorphic_amplicon>GTTCTTATTCACCACCTTGTTTATGCCAGAAATTTGGTGTTGTTTCTAGAAAAGGTCAAGTGTGGTTGAAGGCCTAAAAACACCGAAACTCGATTTCTTGAGACAATGAAAGTTCCACGTGTCACTATCCTTCCACAATTTACGACTTTTACGGTACCGTCCAACCTTTGATTCTGTTCKAATTCGATGTCAACAAATCAAGAATTAGTGGGGTCGTCTTGTTCTTATTCTTAAAACTCTCCTGACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8775</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>172139</contig_pos>
        <strand>+</strand>
        <context>TGATTCTGTT[C/T]KAATTCGATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTTCCACAATTTACGACTTTTACGGTACCGTCCAACCTTTGATTCTGTT</left_flank>
        <right_flank>TAATTCGATGTCAACAAATCAAGAATTAGTGGGGTCGTCTTGTTCTTATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGGCAAACAAGGAATTTTCAAAAAATTCTGTAAATACAAAGTTTTAAATCTAGGTCTGTTTTACACTTTCCAAAATTTTCAAAGTGATCGGAAACAGGACATGCGAGCTCTAGGCTTCCGGTCAAAATGGACGGCACTGTAGGCCTAAAATACGACGAAAACTGAAATTGATATATCGTTTTGAAACAATATAACAAAACGATATGATTCATTTTCAATATTACAGTAGTACAGTGCACATGTACTATAATAATATGACTCTTGAAACTGGTCAAAATGGCCGAAAATCTACTGAAAATCCTATTTCCGGCGGTAACAAAGTTCTTATTCACCACCTTGTTTATGCCAGAAATTTGGTGTTGTTTCTAGAAAAGGTCAAGTGTGGTTGAAGGCCTAAAAACACCGAAACTCGATTTCTTGAGACAATGAAAGTTCCACGTGTCACTATCCTTCCACAATTTACGACTTTTACGGTACCGTCCAACCTTTGATTCTGTTCTAATTCGATGTCAACAAATCAAGAATTAGTGGGGTCGTCTTGTTCTTATTCTTAAAACTCTCCTGACAACTTATATCAGAGATAAGAGATTCATAGTAGGATTACCTCTGCCCACACACTCATATGAGACTATAAGCTGACCTGAAAACGCCCGCCTCATTGTCGATGATGTTCCTGTATAAAAGTAACTGTATATTTTGTACTTTTCAACTGATAAAAATTGCATATTCAAATTTTCGACACATCTCGTGGCATGTTCATATGACATTTTTTGTACTTTCTAAAATCTACAGTGTTCTGAAACTTCCGTTCTGCTCGTTACTCTCTTATCTAATCGCATCCTTATCATTATCTCTCTTTATAAGTTCTCCTAATTTTTTAGCCACTCTCACACACAAAACCACCACTCACACCCAATTATGGGCGCCAACGAGTCTGCCAATTTGCACACCGACGACGGAACGATCCCGATCAGAAGACGTGCACACACATCGTACACC</canonical>
            <polymorphic>CGGGCAAACAAGGAATTTTCAAAAAATTCTGTAAATACAAAGTTTTAAATCTAGGTCTGTTTTACACTTTCCAAAATTTTCAAAGTGATCGGAAACAGGACATGCGAGCTCTAGGCTTCCGGTCAAAATGGACGGCACTGTAGGCCTAAAATACGACGAAAACTGAAATTGATATATCGTTTTGAAACAATATAACAAAACGATATGATTCATTTTCAATATTACAGTAGTACAGTGCACATGTACTATAATAATATGACTCTTGAAACTGGTCAAAATGGCCGAAAATCTACTGAAAATCCTATTTCCGGCGGTAACAAAGTTCTTATTCACCACCTTGTTTATGCCAGAAATTTGGTGTTGTTTCTAGAAAAGGTCAAGTGTGGTTGAAGGCCTAAAAACACCGAAACTCGATTTCTTGAGACAATGAAAGTTCCACGTGTCACTATCCTTCCACAATTTACGACTTTTACGGTACCGTCCAACCTTTGATTCTGTTYTAATTCGATGTCAACAAATCAAGAATTAGTGGGGTCGTCTTGTTCTTATTCTTAAAACTCTCCTGACAACTTATATCAGAGATAAGAGATTCATAGTAGGATTACCTCTGCCCACACACTCATATGAGACTATAAGCTGACCTGAAAACGCCCGCCTCATTGTCGATGATGTTCCTGTATAAAAGTAACTGTATATTTTGTACTTTTCAACTGATAAAAATTGCATATTCAAATTTTCGACACATCTCGTGGCATGTTCATATGACATTTTTTGTACTTTCTAAAATCTACAGTGTTCTGAAACTTCCGTTCTGCTCGTTACTCTCTTATCTAATCGCATCCTTATCATTATCTCTCTTTATAAGTTCTCCTAATTTTTTAGCCACTCTCACACACAAAACCACCACTCACACCCAATTATGGGCGCCAACGAGTCTGCCAATTTGCACACCGACGACGGAACGATCCCGATCAGAAGACGTGCACACACATCGTACACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCTTATTCACCACCTTGTTTA</pcr_primer_p1>
		<pcr_primer_p2>GTTGTCAGGAGAGTTTTAAGAATAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTCTTATTCACCACCTTGTTTATGCCAGAAATTTGGTGTTGTTTCTAGAAAAGGTCAAGTGTGGTTGAAGGCCTAAAAACACCGAAACTCGATTTCTTGAGACAATGAAAGTTCCACGTGTCACTATCCTTCCACAATTTACGACTTTTACGGTACCGTCCAACCTTTGATTCTGTTCTAATTCGATGTCAACAAATCAAGAATTAGTGGGGTCGTCTTGTTCTTATTCTTAAAACTCTCCTGACAAC</canonical_amplicon>
		<polymorphic_amplicon>GTTCTTATTCACCACCTTGTTTATGCCAGAAATTTGGTGTTGTTTCTAGAAAAGGTCAAGTGTGGTTGAAGGCCTAAAAACACCGAAACTCGATTTCTTGAGACAATGAAAGTTCCACGTGTCACTATCCTTCCACAATTTACGACTTTTACGGTACCGTCCAACCTTTGATTCTGTTYTAATTCGATGTCAACAAATCAAGAATTAGTGGGGTCGTCTTGTTCTTATTCTTAAAACTCTCCTGACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8776</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>43384</contig_pos>
        <strand>+</strand>
        <context>GGCTGTGTGC[C/T]AGGATGTGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAATTCGTAGTAAACTTACGTTGCTCCACCAGGAACACGAGGCTGTGTGC</left_flank>
        <right_flank>AGGATGTGCTTTCTCGGCGGATACATGTTCCCTGAGAACTACATAGAGCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGACGAATTTGTTTCCTATTTGGTACAGACGACTGGTACTCAACAAGCCGATTGGGCGATCTAGCGGTCTTCCGGAAAGATTCAGCTTCTTGGATTCGCCAATTCTGGAAAAGCAACTAGATTCTTCAATAACTTGTTTGAATTCACTCACTTTTCCAATAAGTGTCCAAGAGCGGATGCTGGGAGAATCGTAAAAACTGGATCGATCTCATCTACACGTTGCACATGAATATCGTGGGCGCGAAGTTCTCGTTGAACATCGGCCGATTCAGCTAAAACTGTCACTTGAACCTCACATGGAGGTCTCTTCTCGTAAACAGATAGACGTCTACTGAGAGGATCAAGTTCAGCGGGAAGAAGAAATCCTTCATAAAGCAAACAGATAATCACATACAATGATTGGGCCCAAAGGAATGGTCTGAAATTTAGAATAAGTGGACTGGATTGAGAATTCGTAGTAAACTTACGTTGCTCCACCAGGAACACGAGGCTGTGTGCTAGGATGTGCTTTCTCGGCGGATACATGTTCCCTGAGAACTACATAGAGCTCTGGGACAAGGCGGAATCCCTTGTCACTCAAAACTAAAACACTTTCTAGTTGCTGCCAATAAGCTTCCACGGCCTCATCGTCTTTCGAATACATAGCATCTAAAATTAGATAGCACAGAAAAATGGGCCATTCGCATTCAATATCTTCAAATTGTTGGAGTTCTGATTTGTTGTAGTAAAGACGAGAACCATCCTGAAATGAGAATTAACAGGGACGTTTACAGAGATTAACTCACTTCTAGAACAGTCTTGTAACCATCACGCATGAATCGGCGGCATCCGTACTTTCCTAACAACCTATGAGTGATAGTTTCCCTCGTTTGAGCTACCAATTCTGGGTCTTCAACACAGAATGCTGGATAGCTGATAATTCCAAGAAGTGCAGCATCCGTTTCCTATAAAGAAACTACCATTTTAACGATAACTTTATTTTCAGAGCTTACTTTACTG</canonical>
            <polymorphic>ATGACGAATTTGTTTCCTATTTGGTACAGACGACTGGTACTCAACAAGCCGATTGGGCGATCTAGCGGTCTTCCGGAAAGATTCAGCTTCTTGGATTCGCCAATTCTGGAAAAGCAACTAGATTCTTCAATAACTTGTTTGAATTCACTCACTTTTCCAATAAGTGTCCAAGAGCGGATGCTGGGAGAATCGTAAAAACTGGATCGATCTCATCTACACGTTGCACATGAATATCGTGGGCGCGAAGTTCTCGTTGAACATCGGCCGATTCAGCTAAAACTGTCACTTGAACCTCACATGGAGGTCTCTTCTCGTAAACAGATAGACGTCTACTGAGAGGATCAAGTTCAGCGGGAAGAAGAAATCCTTCATAAAGCAAACAGATAATCACATACAATGATTGGGCCCAAAGGAATGGTCTGAAATTTAGAATAAGTGGACTGGATTGAGAATTCGTAGTAAACTTACGTTGCTCCACCAGGAACACGAGGCTGTGTGCYAGGATGTGCTTTCTCGGCGGATACATGTTCCCTGAGAACTACATAGAGCTCTGGGACAAGGCGGAATCCCTTGTCACTCAAAACTAAAACACTTTCTAGTTGCTGCCAATAAGCTTCCACGGCCTCATCGTCTTTCGAATACATAGCATCTAAAATTAGATAGCACAGAAAAATGGGCCATTCGCATTCAATATCTTCAAATTGTTGGAGTTCTGATTTGTTGTAGTAAAGACGAGAACCATCCTGAAATGAGAATTAACAGGGACGTTTACAGAGATTAACTCACTTCTAGAACAGTCTTGTAACCATCACGCATGAATCGGCGGCATCCGTACTTTCCTAACAACCTATGAGTGATAGTTTCCCTCGTTTGAGCTACCAATTCTGGGTCTTCAACACAGAATGCTGGATAGCTGATAATTCCAAGAAGTGCAGCATCCGTTTCCTATAAAGAAACTACCATTTTAACGATAACTTTATTTTCAGAGCTTACTTTACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>381 211 193 97 62 56</canonical_bands>
                <polymorphic_bands>478 211 193 62 56</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGAATAAGTGGACTGGATTGAG</pcr_primer_p1>
		<pcr_primer_p2>CCCATTTTTCTGTGCTATCTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGAATAAGTGGACTGGATTGAGAATTCGTAGTAAACTTACGTTGCTCCACCAGGAACACGAGGCTGTGTGCTAGGATGTGCTTTCTCGGCGGATACATGTTCCCTGAGAACTACATAGAGCTCTGGGACAAGGCGGAATCCCTTGTCACTCAAAACTAAAACACTTTCTAGTTGCTGCCAATAAGCTTCCACGGCCTCATCGTCTTTCGAATACATAGCATCTAAAATTAGATAGCACAGAAAAATGGG</canonical_amplicon>
		<polymorphic_amplicon>TAGAATAAGTGGACTGGATTGAGAATTCGTAGTAAACTTACGTTGCTCCACCAGGAACACGAGGCTGTGTGCYAGGATGTGCTTTCTCGGCGGATACATGTTCCCTGAGAACTACATAGAGCTCTGGGACAAGGCGGAATCCCTTGTCACTCAAAACTAAAACACTTTCTAGTTGCTGCCAATAAGCTTCCACGGCCTCATCGTCTTTCGAATACATAGCATCTAAAATTAGATAGCACAGAAAAATGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8777</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>43403</contig_pos>
        <strand>+</strand>
        <context>CTTTCTCGGC[A/G]GATACATGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTGCTCCACCAGGAACACGAGGCTGTGTGCTAGGATGTGCTTTCTCGGC</left_flank>
        <right_flank>GATACATGTTCCCTGAGAACTACATAGAGCTCTGGGACAAGGCGGAATCC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGGTACAGACGACTGGTACTCAACAAGCCGATTGGGCGATCTAGCGGTCTTCCGGAAAGATTCAGCTTCTTGGATTCGCCAATTCTGGAAAAGCAACTAGATTCTTCAATAACTTGTTTGAATTCACTCACTTTTCCAATAAGTGTCCAAGAGCGGATGCTGGGAGAATCGTAAAAACTGGATCGATCTCATCTACACGTTGCACATGAATATCGTGGGCGCGAAGTTCTCGTTGAACATCGGCCGATTCAGCTAAAACTGTCACTTGAACCTCACATGGAGGTCTCTTCTCGTAAACAGATAGACGTCTACTGAGAGGATCAAGTTCAGCGGGAAGAAGAAATCCTTCATAAAGCAAACAGATAATCACATACAATGATTGGGCCCAAAGGAATGGTCTGAAATTTAGAATAAGTGGACTGGATTGAGAATTCGTAGTAAACTTACGTTGCTCCACCAGGAACACGAGGCTGTGTGCTAGGATGTGCTTTCTCGGCGGATACATGTTCCCTGAGAACTACATAGAGCTCTGGGACAAGGCGGAATCCCTTGTCACTCAAAACTAAAACACTTTCTAGTTGCTGCCAATAAGCTTCCACGGCCTCATCGTCTTTCGAATACATAGCATCTAAAATTAGATAGCACAGAAAAATGGGCCATTCGCATTCAATATCTTCAAATTGTTGGAGTTCTGATTTGTTGTAGTAAAGACGAGAACCATCCTGAAATGAGAATTAACAGGGACGTTTACAGAGATTAACTCACTTCTAGAACAGTCTTGTAACCATCACGCATGAATCGGCGGCATCCGTACTTTCCTAACAACCTATGAGTGATAGTTTCCCTCGTTTGAGCTACCAATTCTGGGTCTTCAACACAGAATGCTGGATAGCTGATAATTCCAAGAAGTGCAGCATCCGTTTCCTATAAAGAAACTACCATTTTAACGATAACTTTATTTTCAGAGCTTACTTTACTGAATGACTCTCTCGGAAGCA</canonical>
            <polymorphic>TTTGGTACAGACGACTGGTACTCAACAAGCCGATTGGGCGATCTAGCGGTCTTCCGGAAAGATTCAGCTTCTTGGATTCGCCAATTCTGGAAAAGCAACTAGATTCTTCAATAACTTGTTTGAATTCACTCACTTTTCCAATAAGTGTCCAAGAGCGGATGCTGGGAGAATCGTAAAAACTGGATCGATCTCATCTACACGTTGCACATGAATATCGTGGGCGCGAAGTTCTCGTTGAACATCGGCCGATTCAGCTAAAACTGTCACTTGAACCTCACATGGAGGTCTCTTCTCGTAAACAGATAGACGTCTACTGAGAGGATCAAGTTCAGCGGGAAGAAGAAATCCTTCATAAAGCAAACAGATAATCACATACAATGATTGGGCCCAAAGGAATGGTCTGAAATTTAGAATAAGTGGACTGGATTGAGAATTCGTAGTAAACTTACGTTGCTCCACCAGGAACACGAGGCTGTGTGCTAGGATGTGCTTTCTCGGCRGATACATGTTCCCTGAGAACTACATAGAGCTCTGGGACAAGGCGGAATCCCTTGTCACTCAAAACTAAAACACTTTCTAGTTGCTGCCAATAAGCTTCCACGGCCTCATCGTCTTTCGAATACATAGCATCTAAAATTAGATAGCACAGAAAAATGGGCCATTCGCATTCAATATCTTCAAATTGTTGGAGTTCTGATTTGTTGTAGTAAAGACGAGAACCATCCTGAAATGAGAATTAACAGGGACGTTTACAGAGATTAACTCACTTCTAGAACAGTCTTGTAACCATCACGCATGAATCGGCGGCATCCGTACTTTCCTAACAACCTATGAGTGATAGTTTCCCTCGTTTGAGCTACCAATTCTGGGTCTTCAACACAGAATGCTGGATAGCTGATAATTCCAAGAAGTGCAGCATCCGTTTCCTATAAAGAAACTACCATTTTAACGATAACTTTATTTTCAGAGCTTACTTTACTGAATGACTCTCTCGGAAGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>497 262 197 44</canonical_bands>
                <polymorphic_bands>541 262 197</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGAATAAGTGGACTGGATTGAG</pcr_primer_p1>
		<pcr_primer_p2>CCCATTTTTCTGTGCTATCTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGAATAAGTGGACTGGATTGAGAATTCGTAGTAAACTTACGTTGCTCCACCAGGAACACGAGGCTGTGTGCTAGGATGTGCTTTCTCGGCGGATACATGTTCCCTGAGAACTACATAGAGCTCTGGGACAAGGCGGAATCCCTTGTCACTCAAAACTAAAACACTTTCTAGTTGCTGCCAATAAGCTTCCACGGCCTCATCGTCTTTCGAATACATAGCATCTAAAATTAGATAGCACAGAAAAATGGG</canonical_amplicon>
		<polymorphic_amplicon>TAGAATAAGTGGACTGGATTGAGAATTCGTAGTAAACTTACGTTGCTCCACCAGGAACACGAGGCTGTGTGCTAGGATGTGCTTTCTCGGCRGATACATGTTCCCTGAGAACTACATAGAGCTCTGGGACAAGGCGGAATCCCTTGTCACTCAAAACTAAAACACTTTCTAGTTGCTGCCAATAAGCTTCCACGGCCTCATCGTCTTTCGAATACATAGCATCTAAAATTAGATAGCACAGAAAAATGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8815</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>50472</contig_pos>
        <strand>+</strand>
        <context>AAAACTCAAA[A/C]TTCAAACTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGTTGAAATGTTCAAAGGAATTTCCTTTTCATTGCCTAAAAAACTCAAA</left_flank>
        <right_flank>TTCAAACTTTTAATTACTTCCGAATACTAAAATTTTAGAGTTATTACACA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTTTCAAACAATTTCTGATTTTAACCTGTATTTACTTTCAGAAAATTATGCAAAATTAGGTTTCTTGTATTCTTGTTCACTACAACTCTTATAGCGCCTAAACCCCCCAATGAGCCGGATTAAACAGACGCAAGTTTGTAGTGTCATAACATTTGAGAAAAGCTTCGCACTGGACTGTATTTTGGAATGCACAAATTCAAAGAAATCATCTGTAAATTGAACAAGTTTCAAACCATTTTATTAACTTTGAGCTATTAAATTTTATTTCTACCAATTTTCGGGCTTCCAAGATGCCTATGTCTCCCCGTTTTTTATCAGTCCGGATCATTGGACGCCATCCTCTAGAGCTTCCTAGAGGGCTTCCAGTGACACTGTAAAATATCAAGTACCTGTTCAATTTTCTCAGCTATCCAGATTTCAAGGTAAAATTGTTGTCTGGCTGTCAAAATGTTGAAATGTTCAAAGGAATTTCCTTTTCATTGCCTAAAAAACTCAAAATTCAAACTTTTAATTACTTCCGAATACTAAAATTTTAGAGTTATTACACACTGAAATTCCAAACATCTTCCAAAGAAGCAAATCAACTTCTTCTTCTTCTTCTTCTTCTTTCTCTTTTTTTTTTTCTACGTCGTACTTTAATTGAGCCTCCAATTTTTTTCGTTTCCTCCCCCACCTATTCGCCATTTTTCGGCCCACAAAACGCCCTTGTGCTGTCTTTTTCAAACGCCAGCAATTTCCGGATCGAACATTCGAAGCACTTCTTTTCGAGTTTCTCTGCGTTTTAATGATCTTTCCAAGTGAAGTCAACCTTTCCGTTTTAGAAGAGTCTGAGCCACATAGTTTTCTTTCTCTGCACCTTCTAGAATCTTCATATTATGGAAGTGTGCTTTCAGAATCTAGAATTAAATCAGATCATAAGCCTCATTTGATAAATCTTCCAAAGGAATTTCTGATTTTTTATATTTTCCATTCAGCTCCTGGCTTTGGCAAAAAGTCAG</canonical>
            <polymorphic>ACTTTTCAAACAATTTCTGATTTTAACCTGTATTTACTTTCAGAAAATTATGCAAAATTAGGTTTCTTGTATTCTTGTTCACTACAACTCTTATAGCGCCTAAACCCCCCAATGAGCCGGATTAAACAGACGCAAGTTTGTAGTGTCATAACATTTGAGAAAAGCTTCGCACTGGACTGTATTTTGGAATGCACAAATTCAAAGAAATCATCTGTAAATTGAACAAGTTTCAAACCATTTTATTAACTTTGAGCTATTAAATTTTATTTCTACCAATTTTCGGGCTTCCAAGATGCCTATGTCTCCCCGTTTTTTATCAGTCCGGATCATTGGACGCCATCCTCTAGAGCTTCCTAGAGGGCTTCCAGTGACACTGTAAAATATCAAGTACCTGTTCAATTTTCTCAGCTATCCAGATTTCAAGGTAAAATTGTTGTCTGGCTGTCAAAATGTTGAAATGTTCAAAGGAATTTCCTTTTCATTGCCTAAAAAACTCAAAMTTCAAACTTTTAATTACTTCCGAATACTAAAATTTTAGAGTTATTACACACTGAAATTCCAAACATCTTCCAAAGAAGCAAATCAACTTCTTCTTCTTCTTCTTCTTCTTTCTCTTTTTTTTTTTCTACGTCGTACTTTAATTGAGCCTCCAATTTTTTTCGTTTCCTCCCCCACCTATTCGCCATTTTTCGGCCCACAAAACGCCCTTGTGCTGTCTTTTTCAAACGCCAGCAATTTCCGGATCGAACATTCGAAGCACTTCTTTTCGAGTTTCTCTGCGTTTTAATGATCTTTCCAAGTGAAGTCAACCTTTCCGTTTTAGAAGAGTCTGAGCCACATAGTTTTCTTTCTCTGCACCTTCTAGAATCTTCATATTATGGAAGTGTGCTTTCAGAATCTAGAATTAAATCAGATCATAAGCCTCATTTGATAAATCTTCCAAAGGAATTTCTGATTTTTTATATTTTCCATTCAGCTCCTGGCTTTGGCAAAAAGTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>392 209 195 64 54 32 30 24</canonical_bands>
                <polymorphic_bands>392 209 195 64 62 54 24</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>169 140 123 85 82 54 44 43 40 34 31 30 24 21 19 15 13 12 11 10</canonical_bands>
                <polymorphic_bands>169 140 123 85 82 54 44 43 43 40 34 31 24 21 19 15 12 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCTCAGCTATCCAGATTTC</pcr_primer_p1>
		<pcr_primer_p2>GGAGGCTCAATTAAAGTACGA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCTCAGCTATCCAGATTTCAAGGTAAAATTGTTGTCTGGCTGTCAAAATGTTGAAATGTTCAAAGGAATTTCCTTTTCATTGCCTAAAAAACTCAAAATTCAAACTTTTAATTACTTCCGAATACTAAAATTTTAGAGTTATTACACACTGAAATTCCAAACATCTTCCAAAGAAGCAAATCAACTTCTTCTTCTTCTTCTTCTTCTTTCTCTTTTTTTTTTTCTACGTCGTACTTTAATTGAGCCTCC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCTCAGCTATCCAGATTTCAAGGTAAAATTGTTGTCTGGCTGTCAAAATGTTGAAATGTTCAAAGGAATTTCCTTTTCATTGCCTAAAAAACTCAAAMTTCAAACTTTTAATTACTTCCGAATACTAAAATTTTAGAGTTATTACACACTGAAATTCCAAACATCTTCCAAAGAAGCAAATCAACTTCTTCTTCTTCTTCTTCTTCTTTCTCTTTTTTTTTTTCTACGTCGTACTTTAATTGAGCCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8816</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>94800</contig_pos>
        <strand>+</strand>
        <context>TGACAAGATG[C/T]GTGCTTGTAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGCATTCATCTTGCACGGTCTCTCAGAACGATTTCCAGTGACAAGATG</left_flank>
        <right_flank>GTGCTTGTAGGTCGATTCTTGCCGTCTTTGTTCGAAAAGTAAAACGATGA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACTTAAAATGCACGAAAATCGAGAAAACAAATCCGGAAACTCATTTCTAGGTTACGATAGTTTTCTTTTGTGGGATCTCCCGACGTTTCTCTTCCACTTATCCTTTTTTATACCAGATATTCCTCAAAAATATGAATTATGAGCAGTAACACTTACCTCTGAATCATCATCGTCTATCGAATAACAAACATCGTTCGCTTTCGATTTTCGCTTTTCAAGATTCTCGCACGACTCATCGTTTTTGACTTCTTCGAATCCGAATGGAACCTGCGCACTCGGAATATCCATTGAACATTCCGATTCGTCGTAACAGTTCTCACTGGCTTTATCTTGTGTGATCCACACCATTACTAAATTCGTTCCGTCGACGAAAGCAGCTTCTATTTTGCTGAAAAATCACAAATTTTTATGATTGATAACCGAGGGAAATCGAAATTACACAGAACATTTTGCATTCATCTTGCACGGTCTCTCAGAACGATTTCCAGTGACAAGATGCGTGCTTGTAGGTCGATTCTTGCCGTCTTTGTTCGAAAAGTAAAACGATGATTGTTTGGGACACGGATAGACATCTGTTCCTTCGTGGAATGATGCAGTGTAGGCTGGAAAATAAACGGTATCAAAAAGTTGCTAACTGATAAATTGTTTATCATGATATCAGAAGTCTTTTGTCAGTTAGCACAGTTTTGATATCTTGCATAGGAGCCAAGATAAATTAGCTCAAACTTGAGAATGTGGTGGCCCCTCTATTACAGGTGTTGCGGTAGTTATTTTCAATACCTTCCGTGAATTGTATATTCGGAAGCCAAATTAGATATCCTCCGGACACTTGACTTGCTAACCGCACCATGAAATTGAATGTTTGCATGAGGAATTGGAATACATGATAGAAAGGCTGAATTATTTAGTTTTCAAATCACATAACTCTTTTTTCAAAATCTCACTCTTAATCTTCCAGCCGACAGTGTGACTTGTTTTGCGGCTTTACAAACTGCCTGA</canonical>
            <polymorphic>GACTTAAAATGCACGAAAATCGAGAAAACAAATCCGGAAACTCATTTCTAGGTTACGATAGTTTTCTTTTGTGGGATCTCCCGACGTTTCTCTTCCACTTATCCTTTTTTATACCAGATATTCCTCAAAAATATGAATTATGAGCAGTAACACTTACCTCTGAATCATCATCGTCTATCGAATAACAAACATCGTTCGCTTTCGATTTTCGCTTTTCAAGATTCTCGCACGACTCATCGTTTTTGACTTCTTCGAATCCGAATGGAACCTGCGCACTCGGAATATCCATTGAACATTCCGATTCGTCGTAACAGTTCTCACTGGCTTTATCTTGTGTGATCCACACCATTACTAAATTCGTTCCGTCGACGAAAGCAGCTTCTATTTTGCTGAAAAATCACAAATTTTTATGATTGATAACCGAGGGAAATCGAAATTACACAGAACATTTTGCATTCATCTTGCACGGTCTCTCAGAACGATTTCCAGTGACAAGATGYGTGCTTGTAGGTCGATTCTTGCCGTCTTTGTTCGAAAAGTAAAACGATGATTGTTTGGGACACGGATAGACATCTGTTCCTTCGTGGAATGATGCAGTGTAGGCTGGAAAATAAACGGTATCAAAAAGTTGCTAACTGATAAATTGTTTATCATGATATCAGAAGTCTTTTGTCAGTTAGCACAGTTTTGATATCTTGCATAGGAGCCAAGATAAATTAGCTCAAACTTGAGAATGTGGTGGCCCCTCTATTACAGGTGTTGCGGTAGTTATTTTCAATACCTTCCGTGAATTGTATATTCGGAAGCCAAATTAGATATCCTCCGGACACTTGACTTGCTAACCGCACCATGAAATTGAATGTTTGCATGAGGAATTGGAATACATGATAGAAAGGCTGAATTATTTAGTTTTCAAATCACATAACTCTTTTTTCAAAATCTCACTCTTAATCTTCCAGCCGACAGTGTGACTTGTTTTGCGGCTTTACAAACTGCCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGATCCACACCATTACTAAAT</pcr_primer_p1>
		<pcr_primer_p2>ACAGATGTCTATCCGTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TGTGATCCACACCATTACTAAATTCGTTCCGTCGACGAAAGCAGCTTCTATTTTGCTGAAAAATCACAAATTTTTATGATTGATAACCGAGGGAAATCGAAATTACACAGAACATTTTGCATTCATCTTGCACGGTCTCTCAGAACGATTTCCAGTGACAAGATGCGTGCTTGTAGGTCGATTCTTGCCGTCTTTGTTCGAAAAGTAAAACGATGATTGTTTGGGACACGGATAGACATCTGT</canonical_amplicon>
		<polymorphic_amplicon>TGTGATCCACACCATTACTAAATTCGTTCCGTCGACGAAAGCAGCTTCTATTTTGCTGAAAAATCACAAATTTTTATGATTGATAACCGAGGGAAATCGAAATTACACAGAACATTTTGCATTCATCTTGCACGGTCTCTCAGAACGATTTCCAGTGACAAGATGYGTGCTTGTAGGTCGATTCTTGCCGTCTTTGTTCGAAAAGTAAAACGATGATTGTTTGGGACACGGATAGACATCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8817</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>107572</contig_pos>
        <strand></strand>
        <context>GAGAAATAGA[C/T]GCCACATCGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAAATGAACGGAATGCGAGTCCAATAGAATGGGCTGCCAGAGAAATAGA</left_flank>
        <right_flank>GCCACATCGACATCTGGAGCCACTTGAGAAATATTCAACTTCTGGGTAGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGATTTCTACATCTGTCAACGCTTTGAAAATTGAGGGTAATTGCTGCTTGATGGTGCTCTTTGCCAATTCCTTGGAACAGGTGGATTTCGGACAAGTAGAAGACATAAGAAGAAAACTGCCACGTGCTGAAGGTGTTGCTGTGTCGCTACTGTCTTTGTAGATATTTTGAATTGGATCGAAAACTCCGATTTCTGAGAATTGAAGACGATCTTCTACAAATTGAACTCGATTGATCCGAAGGGAAATATCACGGAATCCCGTGCTGTAGTTGAAGGAAACAGCTGAAAAATTAAAGTTTCGAGATTTAAAGATCTAGGAGAAACATACGGATGTCACTGAGATGATGAACGAAATCTAAGTCAAGAATTGATTGATGGAATCCACTGAATGGATCATTAACACAGTCAGATAAAGAAATCACAAGAGCTCCTGGACAGACTCGATCTACAAATGAACGGAATGCGAGTCCAATAGAATGGGCTGCCAGAGAAATAGACGCCACATCGACATCTGGAGCCACTTGAGAAATATTCAACTTCTGGGTAGTGGCACATTCTCTGTAAGTGATCATGTTTCACGAATTCAGAAATTGTACGAACCTAGAAAAACTATTTGAACCACCCATATCTTCGTTATCCACGTGGCATTTGAAAGCAGAAGACCAAAATTGTTTGAGCCAGAGATTTGGTAAAGACAAGTTTGGTATGTTCTCAGTCAGTTTCTTGATTTCTTCGTCGTGGTTGATAGGATTTTTTGGAGCAATCTGGAGCAGGTAGTTTTCAGACTAGATTTCATGAAATTACCGATATCAAATGTTGCTCAAATGTTGGCCAACTTTCAATAAATCTTCTCGAAGTTGTCCATCGTTGATCTTGCATTGAAATGAAAACGAAACGGCCAGCGATTACCTAAAGATGTGCTTTTTCAAAAATATCCCAACTCAAATAAAACTACCATTTCTGATCGTAACGCCTTCGTCATCTGAATCCACGTGTCT</canonical>
            <polymorphic>CATGATTTCTACATCTGTCAACGCTTTGAAAATTGAGGGTAATTGCTGCTTGATGGTGCTCTTTGCCAATTCCTTGGAACAGGTGGATTTCGGACAAGTAGAAGACATAAGAAGAAAACTGCCACGTGCTGAAGGTGTTGCTGTGTCGCTACTGTCTTTGTAGATATTTTGAATTGGATCGAAAACTCCGATTTCTGAGAATTGAAGACGATCTTCTACAAATTGAACTCGATTGATCCGAAGGGAAATATCACGGAATCCCGTGCTGTAGTTGAAGGAAACAGCTGAAAAATTAAAGTTTCGAGATTTAAAGATCTAGGAGAAACATACGGATGTCACTGAGATGATGAACGAAATCTAAGTCAAGAATTGATTGATGGAATCCACTGAATGGATCATTAACACAGTCAGATAAAGAAATCACAAGAGCTCCTGGACAGACTCGATCTACAAATGAACGGAATGCGAGTCCAATAGAATGGGCTGCCAGAGAAATAGAYGCCACATCGACATCTGGAGCCACTTGAGAAATATTCAACTTCTGGGTAGTGGCACATTCTCTGTAAGTGATCATGTTTCACGAATTCAGAAATTGTACGAACCTAGAAAAACTATTTGAACCACCCATATCTTCGTTATCCACGTGGCATTTGAAAGCAGAAGACCAAAATTGTTTGAGCCAGAGATTTGGTAAAGACAAGTTTGGTATGTTCTCAGTCAGTTTCTTGATTTCTTCGTCGTGGTTGATAGGATTTTTTGGAGCAATCTGGAGCAGGTAGTTTTCAGACTAGATTTCATGAAATTACCGATATCAAATGTTGCTCAAATGTTGGCCAACTTTCAATAAATCTTCTCGAAGTTGTCCATCGTTGATCTTGCATTGAAATGAAAACGAAACGGCCAGCGATTACCTAAAGATGTGCTTTTTCAAAAATATCCCAACTCAAATAAAACTACCATTTCTGATCGTAACGCCTTCGTCATCTGAATCCACGTGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGGATCATTAACACAGTCAGAT</pcr_primer_p1>
		<pcr_primer_p2>AAGATATGGGTGGTTCAAATAGT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATGGATCATTAACACAGTCAGATAAAGAAATCACAAGAGCTCCTGGACAGACTCGATCTACAAATGAACGGAATGCGAGTCCAATAGAATGGGCTGCCAGAGAAATAGACGCCACATCGACATCTGGAGCCACTTGAGAAATATTCAACTTCTGGGTAGTGGCACATTCTCTGTAAGTGATCATGTTTCACGAATTCAGAAATTGTACGAACCTAGAAAAACTATTTGAACCACCCATATCTT</canonical_amplicon>
		<polymorphic_amplicon>ATGGATCATTAACACAGTCAGATAAAGAAATCACAAGAGCTCCTGGACAGACTCGATCTACAAATGAACGGAATGCGAGTCCAATAGAATGGGCTGCCAGAGAAATAGAYGCCACATCGACATCTGGAGCCACTTGAGAAATATTCAACTTCTGGGTAGTGGCACATTCTCTGTAAGTGATCATGTTTCACGAATTCAGAAATTGTACGAACCTAGAAAAACTATTTGAACCACCCATATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8818</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>107716</contig_pos>
        <strand></strand>
        <context>CGTTATCCAC[G/A]TGGCATTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGTACGAACCTAGAAAAACTATTTGAACCACCCATATCTTCGTTATCCAC</left_flank>
        <right_flank>TGGCATTTGAAAGCAGAAGACCAAAATTGTTTGAGCCAGAGATTTGGTAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCGCTACTGTCTTTGTAGATATTTTGAATTGGATCGAAAACTCCGATTTCTGAGAATTGAAGACGATCTTCTACAAATTGAACTCGATTGATCCGAAGGGAAATATCACGGAATCCCGTGCTGTAGTTGAAGGAAACAGCTGAAAAATTAAAGTTTCGAGATTTAAAGATCTAGGAGAAACATACGGATGTCACTGAGATGATGAACGAAATCTAAGTCAAGAATTGATTGATGGAATCCACTGAATGGATCATTAACACAGTCAGATAAAGAAATCACAAGAGCTCCTGGACAGACTCGATCTACAAATGAACGGAATGCGAGTCCAATAGAATGGGCTGCCAGAGAAATAGACGCCACATCGACATCTGGAGCCACTTGAGAAATATTCAACTTCTGGGTAGTGGCACATTCTCTGTAAGTGATCATGTTTCACGAATTCAGAAATTGTACGAACCTAGAAAAACTATTTGAACCACCCATATCTTCGTTATCCACGTGGCATTTGAAAGCAGAAGACCAAAATTGTTTGAGCCAGAGATTTGGTAAAGACAAGTTTGGTATGTTCTCAGTCAGTTTCTTGATTTCTTCGTCGTGGTTGATAGGATTTTTTGGAGCAATCTGGAGCAGGTAGTTTTCAGACTAGATTTCATGAAATTACCGATATCAAATGTTGCTCAAATGTTGGCCAACTTTCAATAAATCTTCTCGAAGTTGTCCATCGTTGATCTTGCATTGAAATGAAAACGAAACGGCCAGCGATTACCTAAAGATGTGCTTTTTCAAAAATATCCCAACTCAAATAAAACTACCATTTCTGATCGTAACGCCTTCGTCATCTGAATCCACGTGTCTTCTGATAATAATGCCACAACAATCCGGGCTTCCGAGAGCAGCAGCCTGAAATTTTATATTAAGACATCAAAAAAAAATCTTCGAAAAAGGGATTTCAGAAACAGGTTCTAGAAATTTCAGATTTTCGAGAATCTTAAAAAGCCA</canonical>
            <polymorphic>GTCGCTACTGTCTTTGTAGATATTTTGAATTGGATCGAAAACTCCGATTTCTGAGAATTGAAGACGATCTTCTACAAATTGAACTCGATTGATCCGAAGGGAAATATCACGGAATCCCGTGCTGTAGTTGAAGGAAACAGCTGAAAAATTAAAGTTTCGAGATTTAAAGATCTAGGAGAAACATACGGATGTCACTGAGATGATGAACGAAATCTAAGTCAAGAATTGATTGATGGAATCCACTGAATGGATCATTAACACAGTCAGATAAAGAAATCACAAGAGCTCCTGGACAGACTCGATCTACAAATGAACGGAATGCGAGTCCAATAGAATGGGCTGCCAGAGAAATAGACGCCACATCGACATCTGGAGCCACTTGAGAAATATTCAACTTCTGGGTAGTGGCACATTCTCTGTAAGTGATCATGTTTCACGAATTCAGAAATTGTACGAACCTAGAAAAACTATTTGAACCACCCATATCTTCGTTATCCACRTGGCATTTGAAAGCAGAAGACCAAAATTGTTTGAGCCAGAGATTTGGTAAAGACAAGTTTGGTATGTTCTCAGTCAGTTTCTTGATTTCTTCGTCGTGGTTGATAGGATTTTTTGGAGCAATCTGGAGCAGGTAGTTTTCAGACTAGATTTCATGAAATTACCGATATCAAATGTTGCTCAAATGTTGGCCAACTTTCAATAAATCTTCTCGAAGTTGTCCATCGTTGATCTTGCATTGAAATGAAAACGAAACGGCCAGCGATTACCTAAAGATGTGCTTTTTCAAAAATATCCCAACTCAAATAAAACTACCATTTCTGATCGTAACGCCTTCGTCATCTGAATCCACGTGTCTTCTGATAATAATGCCACAACAATCCGGGCTTCCGAGAGCAGCAGCCTGAAATTTTATATTAAGACATCAAAAAAAAATCTTCGAAAAAGGGATTTCAGAAACAGGTTCTAGAAATTTCAGATTTTCGAGAATCTTAAAAAGCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACGTG</site>
                <isoschizomers>
                    <enzyme>AcvI</enzyme>
                    <enzyme>BbrPI</enzyme>
                    <enzyme>Eco72I</enzyme>
                    <enzyme>PmaCI</enzyme>
                    <enzyme>PmlI</enzyme>
                </isoschizomers>
                <canonical_bands>499 351 150</canonical_bands>
                <polymorphic_bands>850 150</polymorphic_bands>
            </assay>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>499 351 150</canonical_bands>
                <polymorphic_bands>850 150</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>180 128 109 96 81 73 71 48 43 29 19 19 19 18 18 15 12 11 4 4 3</canonical_bands>
                <polymorphic_bands>180 128 109 100 81 73 71 48 43 29 19 19 19 18 18 15 12 11 4 3</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>498 351 151</canonical_bands>
                <polymorphic_bands>849 151</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTCAGAAATTGTACGAACCTA</pcr_primer_p1>
		<pcr_primer_p2>AACATTTGAGCAACATTTGATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTCAGAAATTGTACGAACCTAGAAAAACTATTTGAACCACCCATATCTTCGTTATCCACGTGGCATTTGAAAGCAGAAGACCAAAATTGTTTGAGCCAGAGATTTGGTAAAGACAAGTTTGGTATGTTCTCAGTCAGTTTCTTGATTTCTTCGTCGTGGTTGATAGGATTTTTTGGAGCAATCTGGAGCAGGTAGTTTTCAGACTAGATTTCATGAAATTACCGATATCAAATGTTGCTCAAATGTT</canonical_amplicon>
		<polymorphic_amplicon>AATTCAGAAATTGTACGAACCTAGAAAAACTATTTGAACCACCCATATCTTCGTTATCCACRTGGCATTTGAAAGCAGAAGACCAAAATTGTTTGAGCCAGAGATTTGGTAAAGACAAGTTTGGTATGTTCTCAGTCAGTTTCTTGATTTCTTCGTCGTGGTTGATAGGATTTTTTGGAGCAATCTGGAGCAGGTAGTTTTCAGACTAGATTTCATGAAATTACCGATATCAAATGTTGCTCAAATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8819</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>112664</contig_pos>
        <strand>+</strand>
        <context>TCCTCCCCAC[A/G]AGACGAAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCAAATATCCGATGTATTTAGCACCATCCTGTCTTCCTTCCTCCCCAC</left_flank>
        <right_flank>AGACGAAACAGTATAGAGAGTGAAGAGGGAAAAGAGATACGGCAGAAGGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCATGCGGATTGTATATTAACATTTTAAAATTCGACAAAAAAATAATTTGAGGATCCTCGACTGTCGTTTGTGAGCTTTCGGCCAACTCTTTCAAGCCAAGTTTATTCTCATTTGGTTTCAGTACTATCATCTTCATTGTAACAATGTAATTTCTCTATCATCTTCATTCTAAACTTTTTAGAACAGACCTCCCGTGCCTTCTCCGTCTCTTTTTCTCTCTTTTAAAAAAGAGCTCAAAGTCGGAGTTCCGATATTTTCTATTCATTCTTCTTCAATTATTAATTGACATATGAAAATTTCATATTATCCCCCTTTTTTCCTGGTTCTCCTTGTTCAAGTCATTCCCTATTTTCTCCTGGATTTGTTTTCTTACATTTCTTCCAAAAAAAAAATCAACGATCATCACCTAAAGATATCTAAAACCTATGTCCCCCATGTCCCTGAGCTTTCAAATATCCGATGTATTTAGCACCATCCTGTCTTCCTTCCTCCCCACGAGACGAAACAGTATAGAGAGTGAAGAGGGAAAAGAGATACGGCAGAAGGCCGAAGTGCTGAAATATTCATCAACCTGTGTGAGGATGGATGCGTGTAAGGAAAAAAGAAGAGACTCTCTCTTGTGTGTGAGCCACAACGACGAAACGATTACGGTAGTTGTATTTGAACATCGTTAACTGGCATTGGAAGGGAAGAGAAGAAGGACAAGAATTGAAAATGAAGACGTCGGCGGAGGAGGAGAAGGAAGAGGATGATGGGAAAAATGGAGACAGATTTCCTGTTGGATTTTGTTTTATTTCATTTGCTTGATGCGTTACATTCGATGTATAAAAGAATCATTTTAAAGAACATACGAAAATAGAGACAAGAGGAATAAAATATAAAAATGAGGATCTGGTAATAAGAGGGATAAAGAAAAAGAACGTTCGAATCAAAAAGAGTAACATTGAAATACCCGATAATCAAAGAAGCCAAAATTAGGTCTTCTTATTTTTCATAA</canonical>
            <polymorphic>TATCATGCGGATTGTATATTAACATTTTAAAATTCGACAAAAAAATAATTTGAGGATCCTCGACTGTCGTTTGTGAGCTTTCGGCCAACTCTTTCAAGCCAAGTTTATTCTCATTTGGTTTCAGTACTATCATCTTCATTGTAACAATGTAATTTCTCTATCATCTTCATTCTAAACTTTTTAGAACAGACCTCCCGTGCCTTCTCCGTCTCTTTTTCTCTCTTTTAAAAAAGAGCTCAAAGTCGGAGTTCCGATATTTTCTATTCATTCTTCTTCAATTATTAATTGACATATGAAAATTTCATATTATCCCCCTTTTTTCCTGGTTCTCCTTGTTCAAGTCATTCCCTATTTTCTCCTGGATTTGTTTTCTTACATTTCTTCCAAAAAAAAAATCAACGATCATCACCTAAAGATATCTAAAACCTATGTCCCCCATGTCCCTGAGCTTTCAAATATCCGATGTATTTAGCACCATCCTGTCTTCCTTCCTCCCCACRAGACGAAACAGTATAGAGAGTGAAGAGGGAAAAGAGATACGGCAGAAGGCCGAAGTGCTGAAATATTCATCAACCTGTGTGAGGATGGATGCGTGTAAGGAAAAAAGAAGAGACTCTCTCTTGTGTGTGAGCCACAACGACGAAACGATTACGGTAGTTGTATTTGAACATCGTTAACTGGCATTGGAAGGGAAGAGAAGAAGGACAAGAATTGAAAATGAAGACGTCGGCGGAGGAGGAGAAGGAAGAGGATGATGGGAAAAATGGAGACAGATTTCCTGTTGGATTTTGTTTTATTTCATTTGCTTGATGCGTTACATTCGATGTATAAAAGAATCATTTTAAAGAACATACGAAAATAGAGACAAGAGGAATAAAATATAAAAATGAGGATCTGGTAATAAGAGGGATAAAGAAAAAGAACGTTCGAATCAAAAAGAGTAACATTGAAATACCCGATAATCAAAGAAGCCAAAATTAGGTCTTCTTATTTTTCATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCTCCTTGTTCAAGTCATTC</pcr_primer_p1>
		<pcr_primer_p2>GTTGATGAATATTTCAGCACTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTCTCCTTGTTCAAGTCATTCCCTATTTTCTCCTGGATTTGTTTTCTTACATTTCTTCCAAAAAAAAAATCAACGATCATCACCTAAAGATATCTAAAACCTATGTCCCCCATGTCCCTGAGCTTTCAAATATCCGATGTATTTAGCACCATCCTGTCTTCCTTCCTCCCCACGAGACGAAACAGTATAGAGAGTGAAGAGGGAAAAGAGATACGGCAGAAGGCCGAAGTGCTGAAATATTCATCAAC</canonical_amplicon>
		<polymorphic_amplicon>GTTCTCCTTGTTCAAGTCATTCCCTATTTTCTCCTGGATTTGTTTTCTTACATTTCTTCCAAAAAAAAAATCAACGATCATCACCTAAAGATATCTAAAACCTATGTCCCCCATGTCCCTGAGCTTTCAAATATCCGATGTATTTAGCACCATCCTGTCTTCCTTCCTCCCCACRAGACGAAACAGTATAGAGAGTGAAGAGGGAAAAGAGATACGGCAGAAGGCCGAAGTGCTGAAATATTCATCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8820</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>112398</contig_pos>
        <strand>+</strand>
        <context>TTTAAAAAAG[A/G]GCTCAAAGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAACAGACCTCCCGTGCCTTCTCCGTCTCTTTTTCTCTCTTTTAAAAAAG</left_flank>
        <right_flank>GCTCAAAGTCGGAGTTCCGATATTTTCTATTCATTCTTCTTCAATTATTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAGCTTTATTTCGCCTAATGTTCAGCAAAGTTTCATTTTTGAATTTTTCGGGAAACTGAAGTTCAGAATTTTCTCGCTACAGATTTTTACAAAAAGTGTTCATTTTCTCAAAAACCTCCGCATATTTTGCAAGAAGAGAACTCTATTCAACCTTTTCTAAAAAATGTTTCTAGGTAAAGTAGAACTTGATAGCAGTTTCTTTACGGACAATCAGTAATTTCAAAGGAGTTCTAGGGTAGGCTCTGTAGCTTTATTTTGCGTGATTATCATGCGGATTGTATATTAACATTTTAAAATTCGACAAAAAAATAATTTGAGGATCCTCGACTGTCGTTTGTGAGCTTTCGGCCAACTCTTTCAAGCCAAGTTTATTCTCATTTGGTTTCAGTACTATCATCTTCATTGTAACAATGTAATTTCTCTATCATCTTCATTCTAAACTTTTTAGAACAGACCTCCCGTGCCTTCTCCGTCTCTTTTTCTCTCTTTTAAAAAAGAGCTCAAAGTCGGAGTTCCGATATTTTCTATTCATTCTTCTTCAATTATTAATTGACATATGAAAATTTCATATTATCCCCCTTTTTTCCTGGTTCTCCTTGTTCAAGTCATTCCCTATTTTCTCCTGGATTTGTTTTCTTACATTTCTTCCAAAAAAAAAATCAACGATCATCACCTAAAGATATCTAAAACCTATGTCCCCCATGTCCCTGAGCTTTCAAATATCCGATGTATTTAGCACCATCCTGTCTTCCTTCCTCCCCACGAGACGAAACAGTATAGAGAGTGAAGAGGGAAAAGAGATACGGCAGAAGGCCGAAGTGCTGAAATATTCATCAACCTGTGTGAGGATGGATGCGTGTAAGGAAAAAAGAAGAGACTCTCTCTTGTGTGTGAGCCACAACGACGAAACGATTACGGTAGTTGTATTTGAACATCGTTAACTGGCATTGGAAGGGAAGAGAAGAAGGACAAGAATTGAAAATGAAGACGTCGGCGGA</canonical>
            <polymorphic>ATCAGCTTTATTTCGCCTAATGTTCAGCAAAGTTTCATTTTTGAATTTTTCGGGAAACTGAAGTTCAGAATTTTCTCGCTACAGATTTTTACAAAAAGTGTTCATTTTCTCAAAAACCTCCGCATATTTTGCAAGAAGAGAACTCTATTCAACCTTTTCTAAAAAATGTTTCTAGGTAAAGTAGAACTTGATAGCAGTTTCTTTACGGACAATCAGTAATTTCAAAGGAGTTCTAGGGTAGGCTCTGTAGCTTTATTTTGCGTGATTATCATGCGGATTGTATATTAACATTTTAAAATTCGACAAAAAAATAATTTGAGGATCCTCGACTGTCGTTTGTGAGCTTTCGGCCAACTCTTTCAAGCCAAGTTTATTCTCATTTGGTTTCAGTACTATCATCTTCATTGTAACAATGTAATTTCTCTATCATCTTCATTCTAAACTTTTTAGAACAGACCTCCCGTGCCTTCTCCGTCTCTTTTTCTCTCTTTTAAAAAAGRGCTCAAAGTCGGAGTTCCGATATTTTCTATTCATTCTTCTTCAATTATTAATTGACATATGAAAATTTCATATTATCCCCCTTTTTTCCTGGTTCTCCTTGTTCAAGTCATTCCCTATTTTCTCCTGGATTTGTTTTCTTACATTTCTTCCAAAAAAAAAATCAACGATCATCACCTAAAGATATCTAAAACCTATGTCCCCCATGTCCCTGAGCTTTCAAATATCCGATGTATTTAGCACCATCCTGTCTTCCTTCCTCCCCACGAGACGAAACAGTATAGAGAGTGAAGAGGGAAAAGAGATACGGCAGAAGGCCGAAGTGCTGAAATATTCATCAACCTGTGTGAGGATGGATGCGTGTAAGGAAAAAAGAAGAGACTCTCTCTTGTGTGTGAGCCACAACGACGAAACGATTACGGTAGTTGTATTTGAACATCGTTAACTGGCATTGGAAGGGAAGAGAAGAAGGACAAGAATTGAAAATGAAGACGTCGGCGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>286 245 213 158 93 5</canonical_bands>
                <polymorphic_bands>371 286 245 93 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>237 213 137 103 101 93 82 14 8 7 5</canonical_bands>
                <polymorphic_bands>350 237 103 101 93 82 14 8 7 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCATTTGGTTTCAGTACTATCA</pcr_primer_p1>
		<pcr_primer_p2>AGAAAATAGGGAATGACTTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTCATTTGGTTTCAGTACTATCATCTTCATTGTAACAATGTAATTTCTCTATCATCTTCATTCTAAACTTTTTAGAACAGACCTCCCGTGCCTTCTCCGTCTCTTTTTCTCTCTTTTAAAAAAGAGCTCAAAGTCGGAGTTCCGATATTTTCTATTCATTCTTCTTCAATTATTAATTGACATATGAAAATTTCATATTATCCCCCTTTTTTCCTGGTTCTCCTTGTTCAAGTCATTCCCTATTTTCT</canonical_amplicon>
		<polymorphic_amplicon>TCTCATTTGGTTTCAGTACTATCATCTTCATTGTAACAATGTAATTTCTCTATCATCTTCATTCTAAACTTTTTAGAACAGACCTCCCGTGCCTTCTCCGTCTCTTTTTCTCTCTTTTAAAAAAGRGCTCAAAGTCGGAGTTCCGATATTTTCTATTCATTCTTCTTCAATTATTAATTGACATATGAAAATTTCATATTATCCCCCTTTTTTCCTGGTTCTCCTTGTTCAAGTCATTCCCTATTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8821</snp_id>
        <super_contig>c004801456.Contig1</super_contig>
        <contig_pos>105693</contig_pos>
        <strand></strand>
        <context>TTATCCACGA[T/A]ATTATTGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGAATTTGGATGAACTGAAGTATTGTGATATCTGAATCTTTTATCCACGA</left_flank>
        <right_flank>ATTATTGATTGGTTTCTTGTTATTCTAATGATAAAGACTTCTTGAAACAT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAACTTGTGACGTTCGCCTTGAATGCAGGTGGTTATGTTGGAGATAAGATTTATGGAGATGCCTTCCACTGTTTCATTAATGTAAGTTTCAAAATTTTTGAATGTGTAGCTGGTAGTGGCGTTTGAATCGGACATTCAAAAGAAAGCCCTGACGAAGCATTAGCCGTTTTGTAAAACTTTTGATGGTTTCTAAAACTGAAATTCTAGGCCCAAGTTCCTGAAATCATGGAGAATTGCACGACAGACGACCTTGACCCTTCTGAACTCTACAACACTACTTTGATAGACGAAACCAAAGACAAATATTTTGAGTGCATTGCTCAGCAACTCTACAAAGTCCCGTCGTGTAAAATCGGACGAATTGTGGATTTATACAAAGCTGGACATGCTGCAGTTGATTCGTACTTTGATGGTGTGCGTTTTATAGATAGGGCTGATCCGGCTGGATTGAATTTGGATGAACTGAAGTATTGTGATATCTGAATCTTTTATCCACGATATTATTGATTGGTTTCTTGTTATTCTAATGATAAAGACTTCTTGAAACATGCTTCTTTAGAGACGGTTGCTAATAAAAGACTCTAGAAGATTTCAACTCGCTAGTGGAATATTTTGGATACCAAGCCCTTACCGGTTGAGTTACACGGTCTATGAAACGAGCGCCGAAAAACGAGCTTTTCCAGAAAACACTATTTCAAAAAGGCCGTATAAAATCTTTAATTTTTCAAATGTGCTCTGTAACCTACAAAGTAGAATTAGAATTTCTCAAAAAACTGAAATATTTCAGACGCTGAAACAAATAAAAAAACTAGAAAACAGGATTTTGAATTATAAAATTTCATATGTGCTGGAAACTTGTAAAATATGATCTTTACTATTAACAATCACCAAATTCTGTGTGTGAGTGTGTATGTGTGTGTGTCCGGTGTTCCCGGGTCACCTGCCCTATCGAAGTCCAGAATGGACCAAAATTTCTCAAATTTTCCCAGATGACCCGAT</canonical>
            <polymorphic>TAAACTTGTGACGTTCGCCTTGAATGCAGGTGGTTATGTTGGAGATAAGATTTATGGAGATGCCTTCCACTGTTTCATTAATGTAAGTTTCAAAATTTTTGAATGTGTAGCTGGTAGTGGCGTTTGAATCGGACATTCAAAAGAAAGCCCTGACGAAGCATTAGCCGTTTTGTAAAACTTTTGATGGTTTCTAAAACTGAAATTCTAGGCCCAAGTTCCTGAAATCATGGAGAATTGCACGACAGACGACCTTGACCCTTCTGAACTCTACAACACTACTTTGATAGACGAAACCAAAGACAAATATTTTGAGTGCATTGCTCAGCAACTCTACAAAGTCCCGTCGTGTAAAATCGGACGAATTGTGGATTTATACAAAGCTGGACATGCTGCAGTTGATTCGTACTTTGATGGTGTGCGTTTTATAGATAGGGCTGATCCGGCTGGATTGAATTTGGATGAACTGAAGTATTGTGATATCTGAATCTTTTATCCACGAWATTATTGATTGGTTTCTTGTTATTCTAATGATAAAGACTTCTTGAAACATGCTTCTTTAGAGACGGTTGCTAATAAAAGACTCTAGAAGATTTCAACTCGCTAGTGGAATATTTTGGATACCAAGCCCTTACCGGTTGAGTTACACGGTCTATGAAACGAGCGCCGAAAAACGAGCTTTTCCAGAAAACACTATTTCAAAAAGGCCGTATAAAATCTTTAATTTTTCAAATGTGCTCTGTAACCTACAAAGTAGAATTAGAATTTCTCAAAAAACTGAAATATTTCAGACGCTGAAACAAATAAAAAAACTAGAAAACAGGATTTTGAATTATAAAATTTCATATGTGCTGGAAACTTGTAAAATATGATCTTTACTATTAACAATCACCAAATTCTGTGTGTGAGTGTGTATGTGTGTGTGTCCGGTGTTCCCGGGTCACCTGCCCTATCGAAGTCCAGAATGGACCAAAATTTCTCAAATTTTCCCAGATGACCCGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGGTGTGCGTTTTATAGATAG</pcr_primer_p1>
		<pcr_primer_p2>GTTTCATAGACCGTGTAACTCAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATGGTGTGCGTTTTATAGATAGGGCTGATCCGGCTGGATTGAATTTGGATGAACTGAAGTATTGTGATATCTGAATCTTTTATCCACGATATTATTGATTGGTTTCTTGTTATTCTAATGATAAAGACTTCTTGAAACATGCTTCTTTAGAGACGGTTGCTAATAAAAGACTCTAGAAGATTTCAACTCGCTAGTGGAATATTTTGGATACCAAGCCCTTACCGGTTGAGTTACACGGTCTATGAAAC</canonical_amplicon>
		<polymorphic_amplicon>GATGGTGTGCGTTTTATAGATAGGGCTGATCCGGCTGGATTGAATTTGGATGAACTGAAGTATTGTGATATCTGAATCTTTTATCCACGAWATTATTGATTGGTTTCTTGTTATTCTAATGATAAAGACTTCTTGAAACATGCTTCTTTAGAGACGGTTGCTAATAAAAGACTCTAGAAGATTTCAACTCGCTAGTGGAATATTTTGGATACCAAGCCCTTACCGGTTGAGTTACACGGTCTATGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8822</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>18802</contig_pos>
        <strand></strand>
        <context>TCGTTATGCA[C/A]TCATTTTGAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GAATCTACCTCTCCAAACACTGTCTGCCGTCTCCAATCTCTCGTTATGCA</left_flank>
        <right_flank>TCATTTTGACGGGTTTTTTGGTCCATATTCATATGAGCAGGTAGCAATTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTTTCAGTCTTGACCTTTTTTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTTATTTTTTTTCTAGGCCATGACCTAATTTTTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAATTTTTCTAGGTCATGACCTTGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAGTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTCTGACCTAATTTTTCAAAAAATTCAAAAAATTGAATTTTTCAATTTTTCAAATTCCCAATAAGCCATTTTTCCAGAATCTACCTCTCCAAACACTGTCTGCCGTCTCCAATCTCTCGTTATGCACTCATTTTGACGGGTTTTTTGGTCCATATTCATATGAGCAGGTAGCAATTTTGATTTTGAAATTTGTCTAGGCCATTTAATGTGGTGGCCTAAAAAAATCATGTAGAGAAAGTTAGGCCACCATGTTAAAATGGCATAGAAAACCCACAAGACGAATATTAGGCTATTTTTAGTTCATTTACTACGGTGGCCTAGAAAACTCGATTTGCGAAAGTTAGACCATCGTGTTGAAATTTTTGAAAATTAAAAAAAGTAAAATTCTAGAAGTTATAGGAACTTCTGAAAATCAAAATTTTTGAATTTCCCGCCAAATCTAAAACCTCTAAATTCAATTTTCTTTCAGTTTCCAATGCATCGTGGTCCTCTACGCCTTCGCAGCTACTGTAATTTTTGCCACGTGGCTGATGGGCGGAGCCAAACTCGTTCCCTGGATTCTATGCATCAGTTTCATTGCAAAAGCCACTCAATACGTCCCATTCAGCTCTGGAACCCATATTTTCT</canonical>
            <polymorphic>CCTTTTCAGTCTTGACCTTTTTTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTTATTTTTTTTCTAGGCCATGACCTAATTTTTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAATTTTTCTAGGTCATGACCTTGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAGTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTCTGACCTAATTTTTCAAAAAATTCAAAAAATTGAATTTTTCAATTTTTCAAATTCCCAATAAGCCATTTTTCCAGAATCTACCTCTCCAAACACTGTCTGCCGTCTCCAATCTCTCGTTATGCAMTCATTTTGACGGGTTTTTTGGTCCATATTCATATGAGCAGGTAGCAATTTTGATTTTGAAATTTGTCTAGGCCATTTAATGTGGTGGCCTAAAAAAATCATGTAGAGAAAGTTAGGCCACCATGTTAAAATGGCATAGAAAACCCACAAGACGAATATTAGGCTATTTTTAGTTCATTTACTACGGTGGCCTAGAAAACTCGATTTGCGAAAGTTAGACCATCGTGTTGAAATTTTTGAAAATTAAAAAAAGTAAAATTCTAGAAGTTATAGGAACTTCTGAAAATCAAAATTTTTGAATTTCCCGCCAAATCTAAAACCTCTAAATTCAATTTTCTTTCAGTTTCCAATGCATCGTGGTCCTCTACGCCTTCGCAGCTACTGTAATTTTTGCCACGTGGCTGATGGGCGGAGCCAAACTCGTTCCCTGGATTCTATGCATCAGTTTCATTGCAAAAGCCACTCAATACGTCCCATTCAGCTCTGGAACCCATATTTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>132 126 107 105 87 84 62 43 42 39 38 37 33 31 27 4 3</canonical_bands>
                <polymorphic_bands>132 126 115 107 105 87 62 43 42 39 38 37 33 27 4 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAGCCATTTTTCCAGAATCTA</pcr_primer_p1>
		<pcr_primer_p2>AATTTCAAAATCAAAATTGCTAC</pcr_primer_p2>
		<pcr_amplicon_size>130</pcr_amplicon_size>
		<canonical_amplicon>ATAAGCCATTTTTCCAGAATCTACCTCTCCAAACACTGTCTGCCGTCTCCAATCTCTCGTTATGCACTCATTTTGACGGGTTTTTTGGTCCATATTCATATGAGCAGGTAGCAATTTTGATTTTGAAATT</canonical_amplicon>
		<polymorphic_amplicon>ATAAGCCATTTTTCCAGAATCTACCTCTCCAAACACTGTCTGCCGTCTCCAATCTCTCGTTATGCAMTCATTTTGACGGGTTTTTTGGTCCATATTCATATGAGCAGGTAGCAATTTTGATTTTGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8823</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>18734</contig_pos>
        <strand></strand>
        <context>TTCAAATTCC[C/T]AATAAGCCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATTTTTCAAAAAATTCAAAAAATTGAATTTTTCAATTTTTCAAATTCC</left_flank>
        <right_flank>AATAAGCCATTTTTCCAGAATCTACCTCTCCAAACACTGTCTGCCGTCTC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTCATGACCCAGATTTTTCTAGGTCATGACCCAGATTTTTCTAGGTCATGACCTAATTTTTCATGACCTTTTCAGTCTTGACCTTTTTTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTTATTTTTTTTCTAGGCCATGACCTAATTTTTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAATTTTTCTAGGTCATGACCTTGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAGTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTCTGACCTAATTTTTCAAAAAATTCAAAAAATTGAATTTTTCAATTTTTCAAATTCCCAATAAGCCATTTTTCCAGAATCTACCTCTCCAAACACTGTCTGCCGTCTCCAATCTCTCGTTATGCACTCATTTTGACGGGTTTTTTGGTCCATATTCATATGAGCAGGTAGCAATTTTGATTTTGAAATTTGTCTAGGCCATTTAATGTGGTGGCCTAAAAAAATCATGTAGAGAAAGTTAGGCCACCATGTTAAAATGGCATAGAAAACCCACAAGACGAATATTAGGCTATTTTTAGTTCATTTACTACGGTGGCCTAGAAAACTCGATTTGCGAAAGTTAGACCATCGTGTTGAAATTTTTGAAAATTAAAAAAAGTAAAATTCTAGAAGTTATAGGAACTTCTGAAAATCAAAATTTTTGAATTTCCCGCCAAATCTAAAACCTCTAAATTCAATTTTCTTTCAGTTTCCAATGCATCGTGGTCCTCTACGCCTTCGCAGCTACTGTAATTTTTGCCACGTGGCTGATGGGCGGAGCCAAACTCGTTCCCTGGAT</canonical>
            <polymorphic>AGGTCATGACCCAGATTTTTCTAGGTCATGACCCAGATTTTTCTAGGTCATGACCTAATTTTTCATGACCTTTTCAGTCTTGACCTTTTTTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTTATTTTTTTTCTAGGCCATGACCTAATTTTTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAATTTTTCTAGGTCATGACCTTGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAGTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTCTGACCTAATTTTTCAAAAAATTCAAAAAATTGAATTTTTCAATTTTTCAAATTCCYAATAAGCCATTTTTCCAGAATCTACCTCTCCAAACACTGTCTGCCGTCTCCAATCTCTCGTTATGCACTCATTTTGACGGGTTTTTTGGTCCATATTCATATGAGCAGGTAGCAATTTTGATTTTGAAATTTGTCTAGGCCATTTAATGTGGTGGCCTAAAAAAATCATGTAGAGAAAGTTAGGCCACCATGTTAAAATGGCATAGAAAACCCACAAGACGAATATTAGGCTATTTTTAGTTCATTTACTACGGTGGCCTAGAAAACTCGATTTGCGAAAGTTAGACCATCGTGTTGAAATTTTTGAAAATTAAAAAAAGTAAAATTCTAGAAGTTATAGGAACTTCTGAAAATCAAAATTTTTGAATTTCCCGCCAAATCTAAAACCTCTAAATTCAATTTTCTTTCAGTTTCCAATGCATCGTGGTCCTCTACGCCTTCGCAGCTACTGTAATTTTTGCCACGTGGCTGATGGGCGGAGCCAAACTCGTTCCCTGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGTTTAGGGTGAGCAATTT</pcr_primer_p1>
		<pcr_primer_p2>GCATAACGAGAGATTGGAGA</pcr_primer_p2>
		<pcr_amplicon_size>733</pcr_amplicon_size>
		<canonical_amplicon>CCAATAAGCCATTTTTCCAGAATCTACCTCTCCAAACACTGTCTGCCGTCTCCAATCTCTCGTTATGC</canonical_amplicon>
		<polymorphic_amplicon>CYAATAAGCCATTTTTCCAGAATCTACCTCTCCAAACACTGTCTGCCGTCTCCAATCTCTCGTTATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8834</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>67387</contig_pos>
        <strand></strand>
        <context>AATTCTGGTC[A/G]TTTTGAAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTATGGTGGATAGATTATGAAAATAATGAAGATTTCGTAATTCTGGTC</left_flank>
        <right_flank>TTTTGAAACACTTTTTTTCGGAAAATTCATAATTTTTCGAAAAAAATTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGGAATTTACGAAATTACAACAGCTTAAAAATTCCTAGAACGTTTAAGGGCGAACCTCAGGACCACAATACTTCAACGTCCTAATGTACACTTTGTGAAACAGATTTTTTTCACTATTTTCTATTTTTTCAAATTCCAAAAATTTCCAAGAACCTTTAAAAAGTAATTCAGAAGTTCTTGAAAATTGTTTAAAAACTATATTTTTTTAAATTTAATTTGAATTTAAATATTCAGATTTTAAATTTTTTCCAAGAATAAAATTCTAGCGATTATGTAATTTCTCAAACTACCGAATGTGTAAAGAAAAAATATATGACTGATGAAGATTTTTGTTTTTTGGGCATTTTGAAACAGTTTTTTTTGAGTATTTGCTTAATTCAAAAATTTCCAAAAATTCTGGAAAAAACTCTAAAGTTTTAATTAATTTTTTTTCTATTTTTGAAAAAAGTATGGTGGATAGATTATGAAAATAATGAAGATTTCGTAATTCTGGTCATTTTGAAACACTTTTTTTCGGAAAATTCATAATTTTTCGAAAAAAATTTGAAAAGTTGCGGAAAATTAAAAAAAAAAGATTTTGAAATTCGAAAAATTCTGAAAAAATGGAATGGATGTCTAACCAGAAAAATAATACCACAACAACCTAATATTCATGACCTGAAGCTGATTTTTTGTTCTGAAATTCCTAAATGTTTCAAAATTTTTAACTTGCAAATAAAAATTTTTAAAAACGATTAAAGTTTTGAAAAAAGTTGATTTTAATAGATTTTTTTTTAAAGCCCACAGTATCAAATTTTCAATTTTTTTCAGAAAAACATTGTTTGAAAATTGTAACAAAATTTGGACCATAGCAACATGATTATATGGACAATCAAGGCTGTGCCACGGCGGCCGGCTTTGACTAGGCCTGAGAAAGCCGCGGCCTCAGACGCCTTAAGACGAAAAGCATCGGCCGGCCGCGGCTTTCTCGGCTTTGGATTGAAAAGCCGCGGCCGG</canonical>
            <polymorphic>TTTTTGGAATTTACGAAATTACAACAGCTTAAAAATTCCTAGAACGTTTAAGGGCGAACCTCAGGACCACAATACTTCAACGTCCTAATGTACACTTTGTGAAACAGATTTTTTTCACTATTTTCTATTTTTTCAAATTCCAAAAATTTCCAAGAACCTTTAAAAAGTAATTCAGAAGTTCTTGAAAATTGTTTAAAAACTATATTTTTTTAAATTTAATTTGAATTTAAATATTCAGATTTTAAATTTTTTCCAAGAATAAAATTCTAGCGATTATGTAATTTCTCAAACTACCGAATGTGTAAAGAAAAAATATATGACTGATGAAGATTTTTGTTTTTTGGGCATTTTGAAACAGTTTTTTTTGAGTATTTGCTTAATTCAAAAATTTCCAAAAATTCTGGAAAAAACTCTAAAGTTTTAATTAATTTTTTTTCTATTTTTGAAAAAAGTATGGTGGATAGATTATGAAAATAATGAAGATTTCGTAATTCTGGTCRTTTTGAAACACTTTTTTTCGGAAAATTCATAATTTTTCGAAAAAAATTTGAAAAGTTGCGGAAAATTAAAAAAAAAAGATTTTGAAATTCGAAAAATTCTGAAAAAATGGAATGGATGTCTAACCAGAAAAATAATACCACAACAACCTAATATTCATGACCTGAAGCTGATTTTTTGTTCTGAAATTCCTAAATGTTTCAAAATTTTTAACTTGCAAATAAAAATTTTTAAAAACGATTAAAGTTTTGAAAAAAGTTGATTTTAATAGATTTTTTTTTAAAGCCCACAGTATCAAATTTTCAATTTTTTTCAGAAAAACATTGTTTGAAAATTGTAACAAAATTTGGACCATAGCAACATGATTATATGGACAATCAAGGCTGTGCCACGGCGGCCGGCTTTGACTAGGCCTGAGAAAGCCGCGGCCTCAGACGCCTTAAGACGAAAAGCATCGGCCGGCCGCGGCTTTCTCGGCTTTGGATTGAAAAGCCGCGGCCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACTGATGAAGATTTTTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TAATTTTCCGCAACTTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGACTGATGAAGATTTTTGTTTTTTGGGCATTTTGAAACAGTTTTTTTTGAGTATTTGCTTAATTCAAAAATTTCCAAAAATTCTGGAAAAAACTCTAAAGTTTTAATTAATTTTTTTTCTATTTTTGAAAAAAGTATGGTGGATAGATTATGAAAATAATGAAGATTTCGTAATTCTGGTCATTTTGAAACACTTTTTTTCGGAAAATTCATAATTTTTCGAAAAAAATTTGAAAAGTTGCGGAAAATTA</canonical_amplicon>
		<polymorphic_amplicon>TGACTGATGAAGATTTTTGTTTTTTGGGCATTTTGAAACAGTTTTTTTTGAGTATTTGCTTAATTCAAAAATTTCCAAAAATTCTGGAAAAAACTCTAAAGTTTTAATTAATTTTTTTTCTATTTTTGAAAAAAGTATGGTGGATAGATTATGAAAATAATGAAGATTTCGTAATTCTGGTCRTTTTGAAACACTTTTTTTCGGAAAATTCATAATTTTTCGAAAAAAATTTGAAAAGTTGCGGAAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8836</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>67525</contig_pos>
        <strand></strand>
        <context>AAAAATAATA[C/T]CACAACAACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCGAAAAATTCTGAAAAAATGGAATGGATGTCTAACCAGAAAAATAATA</left_flank>
        <right_flank>CACAACAACCTAATATTCATGACCTGAAGCTGATTTTTTGTTCTGAAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAAAAATTTCCAAGAACCTTTAAAAAGTAATTCAGAAGTTCTTGAAAATTGTTTAAAAACTATATTTTTTTAAATTTAATTTGAATTTAAATATTCAGATTTTAAATTTTTTCCAAGAATAAAATTCTAGCGATTATGTAATTTCTCAAACTACCGAATGTGTAAAGAAAAAATATATGACTGATGAAGATTTTTGTTTTTTGGGCATTTTGAAACAGTTTTTTTTGAGTATTTGCTTAATTCAAAAATTTCCAAAAATTCTGGAAAAAACTCTAAAGTTTTAATTAATTTTTTTTCTATTTTTGAAAAAAGTATGGTGGATAGATTATGAAAATAATGAAGATTTCGTAATTCTGGTCATTTTGAAACACTTTTTTTCGGAAAATTCATAATTTTTCGAAAAAAATTTGAAAAGTTGCGGAAAATTAAAAAAAAAAGATTTTGAAATTCGAAAAATTCTGAAAAAATGGAATGGATGTCTAACCAGAAAAATAATACCACAACAACCTAATATTCATGACCTGAAGCTGATTTTTTGTTCTGAAATTCCTAAATGTTTCAAAATTTTTAACTTGCAAATAAAAATTTTTAAAAACGATTAAAGTTTTGAAAAAAGTTGATTTTAATAGATTTTTTTTTAAAGCCCACAGTATCAAATTTTCAATTTTTTTCAGAAAAACATTGTTTGAAAATTGTAACAAAATTTGGACCATAGCAACATGATTATATGGACAATCAAGGCTGTGCCACGGCGGCCGGCTTTGACTAGGCCTGAGAAAGCCGCGGCCTCAGACGCCTTAAGACGAAAAGCATCGGCCGGCCGCGGCTTTCTCGGCTTTGGATTGAAAAGCCGCGGCCGGCAGCCACTTTGCACAGCCTTGCGGACAATGAACATTTTTGTATTATAGACATTTTGGATTACTTTTTTTGCGAAAATTTTTAATTTTCAAAAAAGGTATAACTTGAAAAAAATCAAAGGACGAACCAGTAAAAAACTG</canonical>
            <polymorphic>TCCAAAAATTTCCAAGAACCTTTAAAAAGTAATTCAGAAGTTCTTGAAAATTGTTTAAAAACTATATTTTTTTAAATTTAATTTGAATTTAAATATTCAGATTTTAAATTTTTTCCAAGAATAAAATTCTAGCGATTATGTAATTTCTCAAACTACCGAATGTGTAAAGAAAAAATATATGACTGATGAAGATTTTTGTTTTTTGGGCATTTTGAAACAGTTTTTTTTGAGTATTTGCTTAATTCAAAAATTTCCAAAAATTCTGGAAAAAACTCTAAAGTTTTAATTAATTTTTTTTCTATTTTTGAAAAAAGTATGGTGGATAGATTATGAAAATAATGAAGATTTCGTAATTCTGGTCATTTTGAAACACTTTTTTTCGGAAAATTCATAATTTTTCGAAAAAAATTTGAAAAGTTGCGGAAAATTAAAAAAAAAAGATTTTGAAATTCGAAAAATTCTGAAAAAATGGAATGGATGTCTAACCAGAAAAATAATAYCACAACAACCTAATATTCATGACCTGAAGCTGATTTTTTGTTCTGAAATTCCTAAATGTTTCAAAATTTTTAACTTGCAAATAAAAATTTTTAAAAACGATTAAAGTTTTGAAAAAAGTTGATTTTAATAGATTTTTTTTTAAAGCCCACAGTATCAAATTTTCAATTTTTTTCAGAAAAACATTGTTTGAAAATTGTAACAAAATTTGGACCATAGCAACATGATTATATGGACAATCAAGGCTGTGCCACGGCGGCCGGCTTTGACTAGGCCTGAGAAAGCCGCGGCCTCAGACGCCTTAAGACGAAAAGCATCGGCCGGCCGCGGCTTTCTCGGCTTTGGATTGAAAAGCCGCGGCCGGCAGCCACTTTGCACAGCCTTGCGGACAATGAACATTTTTGTATTATAGACATTTTGGATTACTTTTTTTGCGAAAATTTTTAATTTTCAAAAAAGGTATAACTTGAAAAAAATCAAAGGACGAACCAGTAAAAAACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGTATGGTGGATAGATTATGA</pcr_primer_p1>
		<pcr_primer_p2>CATTTAGGAATTTCAGAACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGTATGGTGGATAGATTATGAAAATAATGAAGATTTCGTAATTCTGGTCATTTTGAAACACTTTTTTTCGGAAAATTCATAATTTTTCGAAAAAAATTTGAAAAGTTGCGGAAAATTAAAAAAAAAAGATTTTGAAATTCGAAAAATTCTGAAAAAATGGAATGGATGTCTAACCAGAAAAATAATACCACAACAACCTAATATTCATGACCTGAAGCTGATTTTTTGTTCTGAAATTCCTAAATG</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGTATGGTGGATAGATTATGAAAATAATGAAGATTTCGTAATTCTGGTCATTTTGAAACACTTTTTTTCGGAAAATTCATAATTTTTCGAAAAAAATTTGAAAAGTTGCGGAAAATTAAAAAAAAAAGATTTTGAAATTCGAAAAATTCTGAAAAAATGGAATGGATGTCTAACCAGAAAAATAATAYCACAACAACCTAATATTCATGACCTGAAGCTGATTTTTTGTTCTGAAATTCCTAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8837</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>67591</contig_pos>
        <strand></strand>
        <context>ATGTTTCAAA[A/T]TTTTTAAYTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCATGACCTGAAGCTGATTTTTTGTTCTGAAATTCCTAAATGTTTCAAA</left_flank>
        <right_flank>TTTTTAACTTGCAAATAAAAATTTTTAAAAACGATTAAAGTTTTGAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTTAAATTTAATTTGAATTTAAATATTCAGATTTTAAATTTTTTCCAAGAATAAAATTCTAGCGATTATGTAATTTCTCAAACTACCGAATGTGTAAAGAAAAAATATATGACTGATGAAGATTTTTGTTTTTTGGGCATTTTGAAACAGTTTTTTTTGAGTATTTGCTTAATTCAAAAATTTCCAAAAATTCTGGAAAAAACTCTAAAGTTTTAATTAATTTTTTTTCTATTTTTGAAAAAAGTATGGTGGATAGATTATGAAAATAATGAAGATTTCGTAATTCTGGTCATTTTGAAACACTTTTTTTCGGAAAATTCATAATTTTTCGAAAAAAATTTGAAAAGTTGCGGAAAATTAAAAAAAAAAGATTTTGAAATTCGAAAAATTCTGAAAAAATGGAATGGATGTCTAACCAGAAAAATAATACCACAACAACCTAATATTCATGACCTGAAGCTGATTTTTTGTTCTGAAATTCCTAAATGTTTCAAAATTTTTAACTTGCAAATAAAAATTTTTAAAAACGATTAAAGTTTTGAAAAAAGTTGATTTTAATAGATTTTTTTTTAAAGCCCACAGTATCAAATTTTCAATTTTTTTCAGAAAAACATTGTTTGAAAATTGTAACAAAATTTGGACCATAGCAACATGATTATATGGACAATCAAGGCTGTGCCACGGCGGCCGGCTTTGACTAGGCCTGAGAAAGCCGCGGCCTCAGACGCCTTAAGACGAAAAGCATCGGCCGGCCGCGGCTTTCTCGGCTTTGGATTGAAAAGCCGCGGCCGGCAGCCACTTTGCACAGCCTTGCGGACAATGAACATTTTTGTATTATAGACATTTTGGATTACTTTTTTTGCGAAAATTTTTAATTTTCAAAAAAGGTATAACTTGAAAAAAATCAAAGGACGAACCAGTAAAAAACTGGATTGAATCGCGCCGAAGGCGCACCATCTTGCTGGTTAAATATAACAATGTTGGTTTATGTATTTA</canonical>
            <polymorphic>TTTTTTTAAATTTAATTTGAATTTAAATATTCAGATTTTAAATTTTTTCCAAGAATAAAATTCTAGCGATTATGTAATTTCTCAAACTACCGAATGTGTAAAGAAAAAATATATGACTGATGAAGATTTTTGTTTTTTGGGCATTTTGAAACAGTTTTTTTTGAGTATTTGCTTAATTCAAAAATTTCCAAAAATTCTGGAAAAAACTCTAAAGTTTTAATTAATTTTTTTTCTATTTTTGAAAAAAGTATGGTGGATAGATTATGAAAATAATGAAGATTTCGTAATTCTGGTCATTTTGAAACACTTTTTTTCGGAAAATTCATAATTTTTCGAAAAAAATTTGAAAAGTTGCGGAAAATTAAAAAAAAAAGATTTTGAAATTCGAAAAATTCTGAAAAAATGGAATGGATGTCTAACCAGAAAAATAATACCACAACAACCTAATATTCATGACCTGAAGCTGATTTTTTGTTCTGAAATTCCTAAATGTTTCAAAWTTTTTAACTTGCAAATAAAAATTTTTAAAAACGATTAAAGTTTTGAAAAAAGTTGATTTTAATAGATTTTTTTTTAAAGCCCACAGTATCAAATTTTCAATTTTTTTCAGAAAAACATTGTTTGAAAATTGTAACAAAATTTGGACCATAGCAACATGATTATATGGACAATCAAGGCTGTGCCACGGCGGCCGGCTTTGACTAGGCCTGAGAAAGCCGCGGCCTCAGACGCCTTAAGACGAAAAGCATCGGCCGGCCGCGGCTTTCTCGGCTTTGGATTGAAAAGCCGCGGCCGGCAGCCACTTTGCACAGCCTTGCGGACAATGAACATTTTTGTATTATAGACATTTTGGATTACTTTTTTTGCGAAAATTTTTAATTTTCAAAAAAGGTATAACTTGAAAAAAATCAAAGGACGAACCAGTAAAAAACTGGATTGAATCGCGCCGAAGGCGCACCATCTTGCTGGTTAAATATAACAATGTTGGTTTATGTATTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>233 130 127 124 90 72 46 41 21 21 21 18 18 11 10 9 8</canonical_bands>
                <polymorphic_bands>233 130 127 124 90 72 46 41 39 21 21 18 11 10 9 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>233 123 99 90 72 63 34 28 26 22 21 21 19 18 18 17 14 11 10 9 8 8 7 7 7 6 5 4</canonical_bands>
                <polymorphic_bands>233 123 99 90 72 63 39 34 28 26 22 21 19 18 17 14 11 10 9 8 8 7 7 7 6 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGATGTCTAACCAGAAAAATAA</pcr_primer_p1>
		<pcr_primer_p2>CATGTTGCTATGGTCCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGATGTCTAACCAGAAAAATAATACCACAACAACCTAATATTCATGACCTGAAGCTGATTTTTTGTTCTGAAATTCCTAAATGTTTCAAAATTTTTAACTTGCAAATAAAAATTTTTAAAAACGATTAAAGTTTTGAAAAAAGTTGATTTTAATAGATTTTTTTTTAAAGCCCACAGTATCAAATTTTCAATTTTTTTCAGAAAAACATTGTTTGAAAATTGTAACAAAATTTGGACCATAGCAACATG</canonical_amplicon>
		<polymorphic_amplicon>TGGATGTCTAACCAGAAAAATAATACCACAACAACCTAATATTCATGACCTGAAGCTGATTTTTTGTTCTGAAATTCCTAAATGTTTCAAAWTTTTTAACTTGCAAATAAAAATTTTTAAAAACGATTAAAGTTTTGAAAAAAGTTGATTTTAATAGATTTTTTTTTAAAGCCCACAGTATCAAATTTTCAATTTTTTTCAGAAAAACATTGTTTGAAAATTGTAACAAAATTTGGACCATAGCAACATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8838</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>67599</contig_pos>
        <strand></strand>
        <context>AAWTTTTTAA[C/T]TTGCAAATAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGAAGCTGATTTTTTGTTCTGAAATTCCTAAATGTTTCAAAATTTTTAA</left_flank>
        <right_flank>TTGCAAATAAAAATTTTTAAAAACGATTAAAGTTTTGAAAAAAGTTGATT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTAATTTGAATTTAAATATTCAGATTTTAAATTTTTTCCAAGAATAAAATTCTAGCGATTATGTAATTTCTCAAACTACCGAATGTGTAAAGAAAAAATATATGACTGATGAAGATTTTTGTTTTTTGGGCATTTTGAAACAGTTTTTTTTGAGTATTTGCTTAATTCAAAAATTTCCAAAAATTCTGGAAAAAACTCTAAAGTTTTAATTAATTTTTTTTCTATTTTTGAAAAAAGTATGGTGGATAGATTATGAAAATAATGAAGATTTCGTAATTCTGGTCATTTTGAAACACTTTTTTTCGGAAAATTCATAATTTTTCGAAAAAAATTTGAAAAGTTGCGGAAAATTAAAAAAAAAAGATTTTGAAATTCGAAAAATTCTGAAAAAATGGAATGGATGTCTAACCAGAAAAATAATACCACAACAACCTAATATTCATGACCTGAAGCTGATTTTTTGTTCTGAAATTCCTAAATGTTTCAAAATTTTTAACTTGCAAATAAAAATTTTTAAAAACGATTAAAGTTTTGAAAAAAGTTGATTTTAATAGATTTTTTTTTAAAGCCCACAGTATCAAATTTTCAATTTTTTTCAGAAAAACATTGTTTGAAAATTGTAACAAAATTTGGACCATAGCAACATGATTATATGGACAATCAAGGCTGTGCCACGGCGGCCGGCTTTGACTAGGCCTGAGAAAGCCGCGGCCTCAGACGCCTTAAGACGAAAAGCATCGGCCGGCCGCGGCTTTCTCGGCTTTGGATTGAAAAGCCGCGGCCGGCAGCCACTTTGCACAGCCTTGCGGACAATGAACATTTTTGTATTATAGACATTTTGGATTACTTTTTTTGCGAAAATTTTTAATTTTCAAAAAAGGTATAACTTGAAAAAAATCAAAGGACGAACCAGTAAAAAACTGGATTGAATCGCGCCGAAGGCGCACCATCTTGCTGGTTAAATATAACAATGTTGGTTTATGTATTTATTATTAAA</canonical>
            <polymorphic>AATTTAATTTGAATTTAAATATTCAGATTTTAAATTTTTTCCAAGAATAAAATTCTAGCGATTATGTAATTTCTCAAACTACCGAATGTGTAAAGAAAAAATATATGACTGATGAAGATTTTTGTTTTTTGGGCATTTTGAAACAGTTTTTTTTGAGTATTTGCTTAATTCAAAAATTTCCAAAAATTCTGGAAAAAACTCTAAAGTTTTAATTAATTTTTTTTCTATTTTTGAAAAAAGTATGGTGGATAGATTATGAAAATAATGAAGATTTCGTAATTCTGGTCATTTTGAAACACTTTTTTTCGGAAAATTCATAATTTTTCGAAAAAAATTTGAAAAGTTGCGGAAAATTAAAAAAAAAAGATTTTGAAATTCGAAAAATTCTGAAAAAATGGAATGGATGTCTAACCAGAAAAATAATACCACAACAACCTAATATTCATGACCTGAAGCTGATTTTTTGTTCTGAAATTCCTAAATGTTTCAAAATTTTTAAYTTGCAAATAAAAATTTTTAAAAACGATTAAAGTTTTGAAAAAAGTTGATTTTAATAGATTTTTTTTTAAAGCCCACAGTATCAAATTTTCAATTTTTTTCAGAAAAACATTGTTTGAAAATTGTAACAAAATTTGGACCATAGCAACATGATTATATGGACAATCAAGGCTGTGCCACGGCGGCCGGCTTTGACTAGGCCTGAGAAAGCCGCGGCCTCAGACGCCTTAAGACGAAAAGCATCGGCCGGCCGCGGCTTTCTCGGCTTTGGATTGAAAAGCCGCGGCCGGCAGCCACTTTGCACAGCCTTGCGGACAATGAACATTTTTGTATTATAGACATTTTGGATTACTTTTTTTGCGAAAATTTTTAATTTTCAAAAAAGGTATAACTTGAAAAAAATCAAAGGACGAACCAGTAAAAAACTGGATTGAATCGCGCCGAAGGCGCACCATCTTGCTGGTTAAATATAACAATGTTGGTTTATGTATTTATTATTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGATGTCTAACCAGAAAAATAA</pcr_primer_p1>
		<pcr_primer_p2>CATGTTGCTATGGTCCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGATGTCTAACCAGAAAAATAATACCACAACAACCTAATATTCATGACCTGAAGCTGATTTTTTGTTCTGAAATTCCTAAATGTTTCAAAATTTTTAACTTGCAAATAAAAATTTTTAAAAACGATTAAAGTTTTGAAAAAAGTTGATTTTAATAGATTTTTTTTTAAAGCCCACAGTATCAAATTTTCAATTTTTTTCAGAAAAACATTGTTTGAAAATTGTAACAAAATTTGGACCATAGCAACATG</canonical_amplicon>
		<polymorphic_amplicon>TGGATGTCTAACCAGAAAAATAATACCACAACAACCTAATATTCATGACCTGAAGCTGATTTTTTGTTCTGAAATTCCTAAATGTTTCAAAATTTTTAAYTTGCAAATAAAAATTTTTAAAAACGATTAAAGTTTTGAAAAAAGTTGATTTTAATAGATTTTTTTTTAAAGCCCACAGTATCAAATTTTCAATTTTTTTCAGAAAAACATTGTTTGAAAATTGTAACAAAATTTGGACCATAGCAACATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8839</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>67623</contig_pos>
        <strand></strand>
        <context>TTTTTAAAAA[C/T]GATTAAAGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCCTAAATGTTTCAAAATTTTTAACTTGCAAATAAAAATTTTTAAAAA</left_flank>
        <right_flank>GATTAAAGTTTTGAAAAAAGTTGATTTTAATAGATTTTTTTTTAAAGCCC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATTTTAAATTTTTTCCAAGAATAAAATTCTAGCGATTATGTAATTTCTCAAACTACCGAATGTGTAAAGAAAAAATATATGACTGATGAAGATTTTTGTTTTTTGGGCATTTTGAAACAGTTTTTTTTGAGTATTTGCTTAATTCAAAAATTTCCAAAAATTCTGGAAAAAACTCTAAAGTTTTAATTAATTTTTTTTCTATTTTTGAAAAAAGTATGGTGGATAGATTATGAAAATAATGAAGATTTCGTAATTCTGGTCATTTTGAAACACTTTTTTTCGGAAAATTCATAATTTTTCGAAAAAAATTTGAAAAGTTGCGGAAAATTAAAAAAAAAAGATTTTGAAATTCGAAAAATTCTGAAAAAATGGAATGGATGTCTAACCAGAAAAATAATACCACAACAACCTAATATTCATGACCTGAAGCTGATTTTTTGTTCTGAAATTCCTAAATGTTTCAAAATTTTTAACTTGCAAATAAAAATTTTTAAAAACGATTAAAGTTTTGAAAAAAGTTGATTTTAATAGATTTTTTTTTAAAGCCCACAGTATCAAATTTTCAATTTTTTTCAGAAAAACATTGTTTGAAAATTGTAACAAAATTTGGACCATAGCAACATGATTATATGGACAATCAAGGCTGTGCCACGGCGGCCGGCTTTGACTAGGCCTGAGAAAGCCGCGGCCTCAGACGCCTTAAGACGAAAAGCATCGGCCGGCCGCGGCTTTCTCGGCTTTGGATTGAAAAGCCGCGGCCGGCAGCCACTTTGCACAGCCTTGCGGACAATGAACATTTTTGTATTATAGACATTTTGGATTACTTTTTTTGCGAAAATTTTTAATTTTCAAAAAAGGTATAACTTGAAAAAAATCAAAGGACGAACCAGTAAAAAACTGGATTGAATCGCGCCGAAGGCGCACCATCTTGCTGGTTAAATATAACAATGTTGGTTTATGTATTTATTATTAAAATCTGAATTTTTATTTCTGGATTG</canonical>
            <polymorphic>AGATTTTAAATTTTTTCCAAGAATAAAATTCTAGCGATTATGTAATTTCTCAAACTACCGAATGTGTAAAGAAAAAATATATGACTGATGAAGATTTTTGTTTTTTGGGCATTTTGAAACAGTTTTTTTTGAGTATTTGCTTAATTCAAAAATTTCCAAAAATTCTGGAAAAAACTCTAAAGTTTTAATTAATTTTTTTTCTATTTTTGAAAAAAGTATGGTGGATAGATTATGAAAATAATGAAGATTTCGTAATTCTGGTCATTTTGAAACACTTTTTTTCGGAAAATTCATAATTTTTCGAAAAAAATTTGAAAAGTTGCGGAAAATTAAAAAAAAAAGATTTTGAAATTCGAAAAATTCTGAAAAAATGGAATGGATGTCTAACCAGAAAAATAATACCACAACAACCTAATATTCATGACCTGAAGCTGATTTTTTGTTCTGAAATTCCTAAATGTTTCAAAATTTTTAACTTGCAAATAAAAATTTTTAAAAAYGATTAAAGTTTTGAAAAAAGTTGATTTTAATAGATTTTTTTTTAAAGCCCACAGTATCAAATTTTCAATTTTTTTCAGAAAAACATTGTTTGAAAATTGTAACAAAATTTGGACCATAGCAACATGATTATATGGACAATCAAGGCTGTGCCACGGCGGCCGGCTTTGACTAGGCCTGAGAAAGCCGCGGCCTCAGACGCCTTAAGACGAAAAGCATCGGCCGGCCGCGGCTTTCTCGGCTTTGGATTGAAAAGCCGCGGCCGGCAGCCACTTTGCACAGCCTTGCGGACAATGAACATTTTTGTATTATAGACATTTTGGATTACTTTTTTTGCGAAAATTTTTAATTTTCAAAAAAGGTATAACTTGAAAAAAATCAAAGGACGAACCAGTAAAAAACTGGATTGAATCGCGCCGAAGGCGCACCATCTTGCTGGTTAAATATAACAATGTTGGTTTATGTATTTATTATTAAAATCTGAATTTTTATTTCTGGATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGATGTCTAACCAGAAAAATAA</pcr_primer_p1>
		<pcr_primer_p2>CATGTTGCTATGGTCCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGATGTCTAACCAGAAAAATAATACCACAACAACCTAATATTCATGACCTGAAGCTGATTTTTTGTTCTGAAATTCCTAAATGTTTCAAAATTTTTAACTTGCAAATAAAAATTTTTAAAAACGATTAAAGTTTTGAAAAAAGTTGATTTTAATAGATTTTTTTTTAAAGCCCACAGTATCAAATTTTCAATTTTTTTCAGAAAAACATTGTTTGAAAATTGTAACAAAATTTGGACCATAGCAACATG</canonical_amplicon>
		<polymorphic_amplicon>TGGATGTCTAACCAGAAAAATAATACCACAACAACCTAATATTCATGACCTGAAGCTGATTTTTTGTTCTGAAATTCCTAAATGTTTCAAAATTTTTAACTTGCAAATAAAAATTTTTAAAAAYGATTAAAGTTTTGAAAAAAGTTGATTTTAATAGATTTTTTTTTAAAGCCCACAGTATCAAATTTTCAATTTTTTTCAGAAAAACATTGTTTGAAAATTGTAACAAAATTTGGACCATAGCAACATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8842</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>71800</contig_pos>
        <strand>+</strand>
        <context>ACAACAATGA[A/T]GACGTGGCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGTTAGATGTGCAGGTTGCCGCATTGATCGATTCGATGAACAACAATGA</left_flank>
        <right_flank>GACGTGGCATCATCATCTGGAGAAGAGGTCTATCCGACGAGACCCAGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATACAAATTTCAGCATTTTCAGAGTTTTCCGTACTCGGTCTCGTTCTACCGTATGCTGGGACACGATCGTCAGTTGCGGCCGTATTATGGTGTCAATGATGAGGTCAGTTGTTGGTCGAGGTGTGAGCAAGGTATGGGCAAGATATGGACAAGACCTTATCCTTGGCCTTGTCCGTGTCCTTGCCTTGGACCGCTCTTGGACCGCCCTTGGTTCGCCCTTGGCTCGCCCTTGGACCACCCTTGGACTGCCCCTTGGACCGCCCTTAGACCGTACTTGGACCGCCCGTGGCTCGCCCTTGGACCGCCCCTGGGCAAGCTATGGGCAAATCATGAGCAATATTTCTTTGCCCATGTCTTGATCAAGCATTGGCCCTAGGCTTAGGTTGTGAACAAGATATGGGTATGACCTTGCCCTTGTCTTGCCTTGCCCTTTCCTTGCCCAACTAAAAGTTAGATGTGCAGGTTGCCGCATTGATCGATTCGATGAACAACAATGATGACGTGGCATCATCATCTGGAGAAGAGGTCTATCCGACGAGACCCAGAAGAAGTGACGGTTTGCGAGGTTCGTTTTATTGGGCAAGGTTCGTAGTTTTGTTTAGTGTGCCTTTCTCGTAGGGGTACGGTAGAAAGTGTAGACAATTTTTTTTTCAAAATTTGCAAAACATTTTATGAATCGATCAGAAAGCTTTCAAGCCTTTGGGAATTTGGGAACTTTTTGAAACATTTTTCAAATTTAAAACAAAAATTTTGAAATGTGTTGTATTCCATCTGAAAGCCCTGGAAGTTTTCAACAAATCTGTGTGATTTTTATTTGGTTAGCTTCTTTTTGAAGCGAGTTACGCGCCTTTTAAATTTCAGCTAAGAGACGCAGAGAAGCGAGAGTGCTCTCGTTTCTCTGCGTCTTTTAAAACTTCAAATCGTCATAACTCGCTTCAAAATTGGTGCAGAAACTAGATTTTTGGTGCATTTTGTTGCAAATTTTGTATATTTTTGGA</canonical>
            <polymorphic>AAATACAAATTTCAGCATTTTCAGAGTTTTCCGTACTCGGTCTCGTTCTACCGTATGCTGGGACACGATCGTCAGTTGCGGCCGTATTATGGTGTCAATGATGAGGTCAGTTGTTGGTCGAGGTGTGAGCAAGGTATGGGCAAGATATGGACAAGACCTTATCCTTGGCCTTGTCCGTGTCCTTGCCTTGGACCGCTCTTGGACCGCCCTTGGTTCGCCCTTGGCTCGCCCTTGGACCACCCTTGGACTGCCCCTTGGACCGCCCTTAGACCGTACTTGGACCGCCCGTGGCTCGCCCTTGGACCGCCCCTGGGCAAGCTATGGGCAAATCATGAGCAATATTTCTTTGCCCATGTCTTGATCAAGCATTGGCCCTAGGCTTAGGTTGTGAACAAGATATGGGTATGACCTTGCCCTTGTCTTGCCTTGCCCTTTCCTTGCCCAACTAAAAGTTAGATGTGCAGGTTGCCGCATTGATCGATTCGATGAACAACAATGAWGACGTGGCATCATCATCTGGAGAAGAGGTCTATCCGACGAGACCCAGAAGAAGTGACGGTTTGCGAGGTTCGTTTTATTGGGCAAGGTTCGTAGTTTTGTTTAGTGTGCCTTTCTCGTAGGGGTACGGTAGAAAGTGTAGACAATTTTTTTTTCAAAATTTGCAAAACATTTTATGAATCGATCAGAAAGCTTTCAAGCCTTTGGGAATTTGGGAACTTTTTGAAACATTTTTCAAATTTAAAACAAAAATTTTGAAATGTGTTGTATTCCATCTGAAAGCCCTGGAAGTTTTCAACAAATCTGTGTGATTTTTATTTGGTTAGCTTCTTTTTGAAGCGAGTTACGCGCCTTTTAAATTTCAGCTAAGAGACGCAGAGAAGCGAGAGTGCTCTCGTTTCTCTGCGTCTTTTAAAACTTCAAATCGTCATAACTCGCTTCAAAATTGGTGCAGAAACTAGATTTTTGGTGCATTTTGTTGCAAATTTTGTATATTTTTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTAAAAGTTAGATGTGCAGGTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTCTACACTTTCTACCGTACC</pcr_primer_p2>
		<pcr_amplicon_size>201</pcr_amplicon_size>
		<canonical_amplicon>AACTAAAAGTTAGATGTGCAGGTTGCCGCATTGATCGATTCGATGAACAACAATGATGACGTGGCATCATCATCTGGAGAAGAGGTCTATCCGACGAGACCCAGAAGAAGTGACGGTTTGCGAGGTTCGTTTTATTGGGCAAGGTTCGTAGTTTTGTTTAGTGTGCCTTTCTCGTAGGGGTACGGTAGAAAGTGTAGACAA</canonical_amplicon>
		<polymorphic_amplicon>AACTAAAAGTTAGATGTGCAGGTTGCCGCATTGATCGATTCGATGAACAACAATGAWGACGTGGCATCATCATCTGGAGAAGAGGTCTATCCGACGAGACCCAGAAGAAGTGACGGTTTGCGAGGTTCGTTTTATTGGGCAAGGTTCGTAGTTTTGTTTAGTGTGCCTTTCTCGTAGGGGTACGGTAGAAAGTGTAGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8843</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>71692</contig_pos>
        <strand>+</strand>
        <context>TAGGTTGTGA[A/T]CAAGATATGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCTTTGCCCATGTCTTGATCAAGCATTGGCCCTAGGCTTAGGTTGTGA</left_flank>
        <right_flank>CAAGATATGGGTATGACCTTGCCCTTGTCTTGCCTTGCCCTTTCCTTGCC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGCGCCGTTTTGACAGCGGCTCGAGCCTCAATCCTCACAGACTCTCCTCCTCCACAAATTCTGACACGTCAGCTGCGGGTTGGGCGGCAATTTGAAATTTCCAGGGAAATACAAATTTCAGCATTTTCAGAGTTTTCCGTACTCGGTCTCGTTCTACCGTATGCTGGGACACGATCGTCAGTTGCGGCCGTATTATGGTGTCAATGATGAGGTCAGTTGTTGGTCGAGGTGTGAGCAAGGTATGGGCAAGATATGGACAAGACCTTATCCTTGGCCTTGTCCGTGTCCTTGCCTTGGACCGCTCTTGGACCGCCCTTGGTTCGCCCTTGGCTCGCCCTTGGACCACCCTTGGACTGCCCCTTGGACCGCCCTTAGACCGTACTTGGACCGCCCGTGGCTCGCCCTTGGACCGCCCCTGGGCAAGCTATGGGCAAATCATGAGCAATATTTCTTTGCCCATGTCTTGATCAAGCATTGGCCCTAGGCTTAGGTTGTGAACAAGATATGGGTATGACCTTGCCCTTGTCTTGCCTTGCCCTTTCCTTGCCCAACTAAAAGTTAGATGTGCAGGTTGCCGCATTGATCGATTCGATGAACAACAATGATGACGTGGCATCATCATCTGGAGAAGAGGTCTATCCGACGAGACCCAGAAGAAGTGACGGTTTGCGAGGTTCGTTTTATTGGGCAAGGTTCGTAGTTTTGTTTAGTGTGCCTTTCTCGTAGGGGTACGGTAGAAAGTGTAGACAATTTTTTTTTCAAAATTTGCAAAACATTTTATGAATCGATCAGAAAGCTTTCAAGCCTTTGGGAATTTGGGAACTTTTTGAAACATTTTTCAAATTTAAAACAAAAATTTTGAAATGTGTTGTATTCCATCTGAAAGCCCTGGAAGTTTTCAACAAATCTGTGTGATTTTTATTTGGTTAGCTTCTTTTTGAAGCGAGTTACGCGCCTTTTAAATTTCAGCTAAGAGACGCAGAGAAGCGAGAGTGCTC</canonical>
            <polymorphic>TATGCGCCGTTTTGACAGCGGCTCGAGCCTCAATCCTCACAGACTCTCCTCCTCCACAAATTCTGACACGTCAGCTGCGGGTTGGGCGGCAATTTGAAATTTCCAGGGAAATACAAATTTCAGCATTTTCAGAGTTTTCCGTACTCGGTCTCGTTCTACCGTATGCTGGGACACGATCGTCAGTTGCGGCCGTATTATGGTGTCAATGATGAGGTCAGTTGTTGGTCGAGGTGTGAGCAAGGTATGGGCAAGATATGGACAAGACCTTATCCTTGGCCTTGTCCGTGTCCTTGCCTTGGACCGCTCTTGGACCGCCCTTGGTTCGCCCTTGGCTCGCCCTTGGACCACCCTTGGACTGCCCCTTGGACCGCCCTTAGACCGTACTTGGACCGCCCGTGGCTCGCCCTTGGACCGCCCCTGGGCAAGCTATGGGCAAATCATGAGCAATATTTCTTTGCCCATGTCTTGATCAAGCATTGGCCCTAGGCTTAGGTTGTGAWCAAGATATGGGTATGACCTTGCCCTTGTCTTGCCTTGCCCTTTCCTTGCCCAACTAAAAGTTAGATGTGCAGGTTGCCGCATTGATCGATTCGATGAACAACAATGATGACGTGGCATCATCATCTGGAGAAGAGGTCTATCCGACGAGACCCAGAAGAAGTGACGGTTTGCGAGGTTCGTTTTATTGGGCAAGGTTCGTAGTTTTGTTTAGTGTGCCTTTCTCGTAGGGGTACGGTAGAAAGTGTAGACAATTTTTTTTTCAAAATTTGCAAAACATTTTATGAATCGATCAGAAAGCTTTCAAGCCTTTGGGAATTTGGGAACTTTTTGAAACATTTTTCAAATTTAAAACAAAAATTTTGAAATGTGTTGTATTCCATCTGAAAGCCCTGGAAGTTTTCAACAAATCTGTGTGATTTTTATTTGGTTAGCTTCTTTTTGAAGCGAGTTACGCGCCTTTTAAATTTCAGCTAAGAGACGCAGAGAAGCGAGAGTGCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 253 249</canonical_bands>
                <polymorphic_bands>747 253</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATGGGCAAGATATGGACA</pcr_primer_p1>
		<pcr_primer_p2>CAACCTGCACATCTAACTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>335</pcr_amplicon_size>
		<canonical_amplicon>GTATGGGCAAGATATGGACAAGACCTTATCCTTGGCCTTGTCCGTGTCCTTGCCTTGGACCGCTCTTGGACCGCCCTTGGTTCGCCCTTGGCTCGCCCTTGGACCACCCTTGGACTGCCCCTTGGACCGCCCTTAGACCGTACTTGGACCGCCCGTGGCTCGCCCTTGGACCGCCCCTGGGCAAGCTATGGGCAAATCATGAGCAATATTTCTTTGCCCATGTCTTGATCAAGCATTGGCCCTAGGCTTAGGTTGTGAACAAGATATGGGTATGACCTTGCCCTTGTCTTGCCTTGCCCTTTCCTTGCCCAACTAAAAGTTAGATGTGCAGGTTG</canonical_amplicon>
		<polymorphic_amplicon>GTATGGGCAAGATATGGACAAGACCTTATCCTTGGCCTTGTCCGTGTCCTTGCCTTGGACCGCTCTTGGACCGCCCTTGGTTCGCCCTTGGCTCGCCCTTGGACCACCCTTGGACTGCCCCTTGGACCGCCCTTAGACCGTACTTGGACCGCCCGTGGCTCGCCCTTGGACCGCCCCTGGGCAAGCTATGGGCAAATCATGAGCAATATTTCTTTGCCCATGTCTTGATCAAGCATTGGCCCTAGGCTTAGGTTGTGAWCAAGATATGGGTATGACCTTGCCCTTGTCTTGCCTTGCCCTTTCCTTGCCCAACTAAAAGTTAGATGTGCAGGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8844</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>71645</contig_pos>
        <strand>+</strand>
        <context>AGCAATATTT[C/T]TTTGCCCATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCCTTGGACCGCCCCTGGGCAAGCTATGGGCAAATCATGAGCAATATTT</left_flank>
        <right_flank>TTTGCCCATGTCTTGATCAAGCATTGGCCCTAGGCTTAGGTTGTGAACAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGATGCTTCTACGATCATCATCTCTACTGGGCTCCCTGCTCCTAGTATGCGCCGTTTTGACAGCGGCTCGAGCCTCAATCCTCACAGACTCTCCTCCTCCACAAATTCTGACACGTCAGCTGCGGGTTGGGCGGCAATTTGAAATTTCCAGGGAAATACAAATTTCAGCATTTTCAGAGTTTTCCGTACTCGGTCTCGTTCTACCGTATGCTGGGACACGATCGTCAGTTGCGGCCGTATTATGGTGTCAATGATGAGGTCAGTTGTTGGTCGAGGTGTGAGCAAGGTATGGGCAAGATATGGACAAGACCTTATCCTTGGCCTTGTCCGTGTCCTTGCCTTGGACCGCTCTTGGACCGCCCTTGGTTCGCCCTTGGCTCGCCCTTGGACCACCCTTGGACTGCCCCTTGGACCGCCCTTAGACCGTACTTGGACCGCCCGTGGCTCGCCCTTGGACCGCCCCTGGGCAAGCTATGGGCAAATCATGAGCAATATTTCTTTGCCCATGTCTTGATCAAGCATTGGCCCTAGGCTTAGGTTGTGAACAAGATATGGGTATGACCTTGCCCTTGTCTTGCCTTGCCCTTTCCTTGCCCAACTAAAAGTTAGATGTGCAGGTTGCCGCATTGATCGATTCGATGAACAACAATGATGACGTGGCATCATCATCTGGAGAAGAGGTCTATCCGACGAGACCCAGAAGAAGTGACGGTTTGCGAGGTTCGTTTTATTGGGCAAGGTTCGTAGTTTTGTTTAGTGTGCCTTTCTCGTAGGGGTACGGTAGAAAGTGTAGACAATTTTTTTTTCAAAATTTGCAAAACATTTTATGAATCGATCAGAAAGCTTTCAAGCCTTTGGGAATTTGGGAACTTTTTGAAACATTTTTCAAATTTAAAACAAAAATTTTGAAATGTGTTGTATTCCATCTGAAAGCCCTGGAAGTTTTCAACAAATCTGTGTGATTTTTATTTGGTTAGCTTCTTTTTGAAGCGAGTTAC</canonical>
            <polymorphic>CCAGATGCTTCTACGATCATCATCTCTACTGGGCTCCCTGCTCCTAGTATGCGCCGTTTTGACAGCGGCTCGAGCCTCAATCCTCACAGACTCTCCTCCTCCACAAATTCTGACACGTCAGCTGCGGGTTGGGCGGCAATTTGAAATTTCCAGGGAAATACAAATTTCAGCATTTTCAGAGTTTTCCGTACTCGGTCTCGTTCTACCGTATGCTGGGACACGATCGTCAGTTGCGGCCGTATTATGGTGTCAATGATGAGGTCAGTTGTTGGTCGAGGTGTGAGCAAGGTATGGGCAAGATATGGACAAGACCTTATCCTTGGCCTTGTCCGTGTCCTTGCCTTGGACCGCTCTTGGACCGCCCTTGGTTCGCCCTTGGCTCGCCCTTGGACCACCCTTGGACTGCCCCTTGGACCGCCCTTAGACCGTACTTGGACCGCCCGTGGCTCGCCCTTGGACCGCCCCTGGGCAAGCTATGGGCAAATCATGAGCAATATTTYTTTGCCCATGTCTTGATCAAGCATTGGCCCTAGGCTTAGGTTGTGAACAAGATATGGGTATGACCTTGCCCTTGTCTTGCCTTGCCCTTTCCTTGCCCAACTAAAAGTTAGATGTGCAGGTTGCCGCATTGATCGATTCGATGAACAACAATGATGACGTGGCATCATCATCTGGAGAAGAGGTCTATCCGACGAGACCCAGAAGAAGTGACGGTTTGCGAGGTTCGTTTTATTGGGCAAGGTTCGTAGTTTTGTTTAGTGTGCCTTTCTCGTAGGGGTACGGTAGAAAGTGTAGACAATTTTTTTTTCAAAATTTGCAAAACATTTTATGAATCGATCAGAAAGCTTTCAAGCCTTTGGGAATTTGGGAACTTTTTGAAACATTTTTCAAATTTAAAACAAAAATTTTGAAATGTGTTGTATTCCATCTGAAAGCCCTGGAAGTTTTCAACAAATCTGTGTGATTTTTATTTGGTTAGCTTCTTTTTGAAGCGAGTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGAGGTCAGTTGTTGGTC</pcr_primer_p1>
		<pcr_primer_p2>GCAAGGTCATACCCATATCTT</pcr_primer_p2>
		<pcr_amplicon_size>315</pcr_amplicon_size>
		<canonical_amplicon>GATGAGGTCAGTTGTTGGTCGAGGTGTGAGCAAGGTATGGGCAAGATATGGACAAGACCTTATCCTTGGCCTTGTCCGTGTCCTTGCCTTGGACCGCTCTTGGACCGCCCTTGGTTCGCCCTTGGCTCGCCCTTGGACCACCCTTGGACTGCCCCTTGGACCGCCCTTAGACCGTACTTGGACCGCCCGTGGCTCGCCCTTGGACCGCCCCTGGGCAAGCTATGGGCAAATCATGAGCAATATTTCTTTGCCCATGTCTTGATCAAGCATTGGCCCTAGGCTTAGGTTGTGAACAAGATATGGGTATGACCTTGC</canonical_amplicon>
		<polymorphic_amplicon>GATGAGGTCAGTTGTTGGTCGAGGTGTGAGCAAGGTATGGGCAAGATATGGACAAGACCTTATCCTTGGCCTTGTCCGTGTCCTTGCCTTGGACCGCTCTTGGACCGCCCTTGGTTCGCCCTTGGCTCGCCCTTGGACCACCCTTGGACTGCCCCTTGGACCGCCCTTAGACCGTACTTGGACCGCCCGTGGCTCGCCCTTGGACCGCCCCTGGGCAAGCTATGGGCAAATCATGAGCAATATTTYTTTGCCCATGTCTTGATCAAGCATTGGCCCTAGGCTTAGGTTGTGAACAAGATATGGGTATGACCTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8845</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>113659</contig_pos>
        <strand></strand>
        <context>AATTGAATTT[G/A]AAAAATTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTAGCAGTCTTTTCTTAAATTTCCACTGGAATGTCGAAAATTGAATTT</left_flank>
        <right_flank>AAAAATTTTGTTTTAAAAAATCGGTTTCATGAAACTGCAAAATTCGAATA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCTACTGCGGCATTCTAATTTTTTGCGATCCAATTAAACCATGTTAAAATTTTCAAAAAAAAAATTAAATTTTTTTTGGGATATTTACTTTTCTTTTGAGCGAAAATTTCTGACAATCTTGTAATTTTCTTCGTAGGTGGAAAGCCTTTTCTTATGCAAAAAGAGGGAAATTCTGTTTCTGGAAACTGTTGAGAATCTGAGAAATGCATTATTGGGAGTGATCTTTTATCTTTCGTATTAAAAAAATCACATATAACTTTTAAAAATTTTATCTAGATTCACAAGGTTAGGAGAATAAAATTTTCGGGATTGCGACCGCGTAGCTCTGCCGGTAGCTGCGCGGTACTTTCAATATTTAGCTCGTAAGTCGAGAAAATGAATTTTCTTGGAAAGATAAAGAACTGAAAAAAAATTGAACATTATGAAAATGCAAAACAGTAATACGCATTTTAGCAGTCTTTTCTTAAATTTCCACTGGAATGTCGAAAATTGAATTTGAAAAATTTTGTTTTAAAAAATCGGTTTCATGAAACTGCAAAATTCGAATATTTATTCGATTGGATAATAAACATTCAGTCTGCTGTTAACGTTTAGAAGTGGTCGAAGCAGTAATCCTTTCTGTCTAATGTTGACTAGTTATACCCACAGAAAACTCAAAAAAAGATAAAATGCCATTATGGTCCTTGAAAGTCTATCAACCAATGCCAAAGTTTTCACTGTTTTCTGATAGACGAAATTAGAAAACTTTGATACTAACTGAGTTGGGTACAAAAATGTGAAAAGCCTTTTCAGATACATAACGAAGAAATTCTGTTTCAGAGAACTGATGAGAATCTGAGAAATTAATTTTTTAGTTGCTTGTTAACTGTAGGTACAAAAAATATTTCATTTCACTCAAAAATTTTTTAGCTAGGTTTCCGAGGTAAGGACCAAATGGAAAGCGGCGCGGTTCGTTCAATAATTAGCCTATAAGGTCAATTTCTTTAGTAATAGATTTG</canonical>
            <polymorphic>TCTCTACTGCGGCATTCTAATTTTTTGCGATCCAATTAAACCATGTTAAAATTTTCAAAAAAAAAATTAAATTTTTTTTGGGATATTTACTTTTCTTTTGAGCGAAAATTTCTGACAATCTTGTAATTTTCTTCGTAGGTGGAAAGCCTTTTCTTATGCAAAAAGAGGGAAATTCTGTTTCTGGAAACTGTTGAGAATCTGAGAAATGCATTATTGGGAGTGATCTTTTATCTTTCGTATTAAAAAAATCACATATAACTTTTAAAAATTTTATCTAGATTCACAAGGTTAGGAGAATAAAATTTTCGGGATTGCGACCGCGTAGCTCTGCCGGTAGCTGCGCGGTACTTTCAATATTTAGCTCGTAAGTCGAGAAAATGAATTTTCTTGGAAAGATAAAGAACTGAAAAAAAATTGAACATTATGAAAATGCAAAACAGTAATACGCATTTTAGCAGTCTTTTCTTAAATTTCCACTGGAATGTCGAAAATTGAATTTRAAAAATTTTGTTTTAAAAAATCGGTTTCATGAAACTGCAAAATTCGAATATTTATTCGATTGGATAATAAACATTCAGTCTGCTGTTAACGTTTAGAAGTGGTCGAAGCAGTAATCCTTTCTGTCTAATGTTGACTAGTTATACCCACAGAAAACTCAAAAAAAGATAAAATGCCATTATGGTCCTTGAAAGTCTATCAACCAATGCCAAAGTTTTCACTGTTTTCTGATAGACGAAATTAGAAAACTTTGATACTAACTGAGTTGGGTACAAAAATGTGAAAAGCCTTTTCAGATACATAACGAAGAAATTCTGTTTCAGAGAACTGATGAGAATCTGAGAAATTAATTTTTTAGTTGCTTGTTAACTGTAGGTACAAAAAATATTTCATTTCACTCAAAAATTTTTTAGCTAGGTTTCCGAGGTAAGGACCAAATGGAAAGCGGCGCGGTTCGTTCAATAATTAGCCTATAAGGTCAATTTCTTTAGTAATAGATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTGGAAAGATAAAGAACTGA</pcr_primer_p1>
		<pcr_primer_p2>CATTAGACAGAAAGGATTACTGC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTCTTGGAAAGATAAAGAACTGAAAAAAAATTGAACATTATGAAAATGCAAAACAGTAATACGCATTTTAGCAGTCTTTTCTTAAATTTCCACTGGAATGTCGAAAATTGAATTTGAAAAATTTTGTTTTAAAAAATCGGTTTCATGAAACTGCAAAATTCGAATATTTATTCGATTGGATAATAAACATTCAGTCTGCTGTTAACGTTTAGAAGTGGTCGAAGCAGTAATCCTTTCTGTCTAATG</canonical_amplicon>
		<polymorphic_amplicon>TTCTTGGAAAGATAAAGAACTGAAAAAAAATTGAACATTATGAAAATGCAAAACAGTAATACGCATTTTAGCAGTCTTTTCTTAAATTTCCACTGGAATGTCGAAAATTGAATTTRAAAAATTTTGTTTTAAAAAATCGGTTTCATGAAACTGCAAAATTCGAATATTTATTCGATTGGATAATAAACATTCAGTCTGCTGTTAACGTTTAGAAGTGGTCGAAGCAGTAATCCTTTCTGTCTAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8849</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>115814</contig_pos>
        <strand>+</strand>
        <context>ATTTCAACTG[G/T]AAAATTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATAGGCTACAGTACCGTATAAAAATAAATCATGTTTTGACATTTCAACTG</left_flank>
        <right_flank>AAAATTTTTTGTGTTTCTTGGGGCTGTGATAATTTCATATGCTGTAAAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTCCAAGAGTTGCTTAAATACAGTAAGATATAATACTTTGATTTTTTCACTAAAAAAATAAAACTTCTGTTTCGTGGGGCTGTGATAATTTGAAACTGTGTGCTAATTTGATTTTTTTTTCGTGTCACAGAAACTGAATTGTAAGAATGTCACAGAAACTGAATTGTAAGAGTACATACGGGAAACACATAAATAGAATGGGCCTAAAACCGACAACTTTGAGCTGATATATCTCTTTTTTGTAAAAGATATCAAAAAATGGTCAACTGATAAAGTAATTTTGGTATCATGATAAACAGTTAATCAGTTGATCATTTTTTACTATCTTTTACAAGAAATAAGATAAGTTTCCCCAAAGTTGAACAATAATGGGGGGCTTCAAACGCTGGTAGGCCGTCATTGGTCCGTTCTTTTGAAAAAAAAAAACGGAAAAACACCCAAGAGCCCATAGGCTACAGTACCGTATAAAAATAAATCATGTTTTGACATTTCAACTGTAAAATTTTTTGTGTTTCTTGGGGCTGTGATAATTTCATATGCTGTAAAAACTGAACTCCATGCTTTTAGTTCAATTGCAGATTTGTTTTTTCCTTGTGCCTCGACATTTTCTTAAAGCGTCGAATTTGAAAAAAATGAATACAAAAGAATCAACGATCACATTGAAGATTGTTTATGAGCAAACGTTTTGAACAAACTTCATTGAAACTGCATTTGAAATTTGAAAATTAGTAACCGGACAAAAAGTGGAAAAAAGTCACTTTCACAGCCGTAAAAATGTAGTTTAGGATTCCCCGATTCATCTGAAATTTTAAGAGTATACTAAACAAAAATAGAGTTTTATTTTTGTAATGGACAACTCTTTTGTGAAAGTCCTACAAAGCAAGATAAGCGGTTCTAAATTGGAACAATGTAAAGTTCAACTTTTGACTAAATTAATATCACTTCCTGTCAAAAGTCAACTTAAATCATGTTTATCATAATATCAAAACGATTTTGTC</canonical>
            <polymorphic>ACCTCCAAGAGTTGCTTAAATACAGTAAGATATAATACTTTGATTTTTTCACTAAAAAAATAAAACTTCTGTTTCGTGGGGCTGTGATAATTTGAAACTGTGTGCTAATTTGATTTTTTTTTCGTGTCACAGAAACTGAATTGTAAGAATGTCACAGAAACTGAATTGTAAGAGTACATACGGGAAACACATAAATAGAATGGGCCTAAAACCGACAACTTTGAGCTGATATATCTCTTTTTTGTAAAAGATATCAAAAAATGGTCAACTGATAAAGTAATTTTGGTATCATGATAAACAGTTAATCAGTTGATCATTTTTTACTATCTTTTACAAGAAATAAGATAAGTTTCCCCAAAGTTGAACAATAATGGGGGGCTTCAAACGCTGGTAGGCCGTCATTGGTCCGTTCTTTTGAAAAAAAAAAACGGAAAAACACCCAAGAGCCCATAGGCTACAGTACCGTATAAAAATAAATCATGTTTTGACATTTCAACTGKAAAATTTTTTGTGTTTCTTGGGGCTGTGATAATTTCATATGCTGTAAAAACTGAACTCCATGCTTTTAGTTCAATTGCAGATTTGTTTTTTCCTTGTGCCTCGACATTTTCTTAAAGCGTCGAATTTGAAAAAAATGAATACAAAAGAATCAACGATCACATTGAAGATTGTTTATGAGCAAACGTTTTGAACAAACTTCATTGAAACTGCATTTGAAATTTGAAAATTAGTAACCGGACAAAAAGTGGAAAAAAGTCACTTTCACAGCCGTAAAAATGTAGTTTAGGATTCCCCGATTCATCTGAAATTTTAAGAGTATACTAAACAAAAATAGAGTTTTATTTTTGTAATGGACAACTCTTTTGTGAAAGTCCTACAAAGCAAGATAAGCGGTTCTAAATTGGAACAATGTAAAGTTCAACTTTTGACTAAATTAATATCACTTCCTGTCAAAAGTCAACTTAAATCATGTTTATCATAATATCAAAACGATTTTGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>502 201 159 75 34 24 5</canonical_bands>
                <polymorphic_bands>536 201 159 75 24 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAGCCCATAGGCTACAGT</pcr_primer_p1>
		<pcr_primer_p2>TTTGCTCATAAACAATCTTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AAGAGCCCATAGGCTACAGTACCGTATAAAAATAAATCATGTTTTGACATTTCAACTGTAAAATTTTTTGTGTTTCTTGGGGCTGTGATAATTTCATATGCTGTAAAAACTGAACTCCATGCTTTTAGTTCAATTGCAGATTTGTTTTTTCCTTGTGCCTCGACATTTTCTTAAAGCGTCGAATTTGAAAAAAATGAATACAAAAGAATCAACGATCACATTGAAGATTGTTTATGAGCAAA</canonical_amplicon>
		<polymorphic_amplicon>AAGAGCCCATAGGCTACAGTACCGTATAAAAATAAATCATGTTTTGACATTTCAACTGKAAAATTTTTTGTGTTTCTTGGGGCTGTGATAATTTCATATGCTGTAAAAACTGAACTCCATGCTTTTAGTTCAATTGCAGATTTGTTTTTTCCTTGTGCCTCGACATTTTCTTAAAGCGTCGAATTTGAAAAAAATGAATACAAAAGAATCAACGATCACATTGAAGATTGTTTATGAGCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8850</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>115722</contig_pos>
        <strand>+</strand>
        <context>GTCATTGGTC[C/T]GTTCTTTTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGTTGAACAATAATGGGGGGCTTCAAACGCTGGTAGGCCGTCATTGGTC</left_flank>
        <right_flank>GTTCTTTTGAAAAAAAAAAACGGAAAAACACCCAAGAGCCCATAGGCTAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGTATTAGAGGAAAGGGAAAATAGGTTCGAGGTGTCTCAACCGCTGTTGGACCGCTCCTGACCCGTTCGTTTGGGAAAAAAACACGGAGAACCTCCAAGAGTTGCTTAAATACAGTAAGATATAATACTTTGATTTTTTCACTAAAAAAATAAAACTTCTGTTTCGTGGGGCTGTGATAATTTGAAACTGTGTGCTAATTTGATTTTTTTTTCGTGTCACAGAAACTGAATTGTAAGAATGTCACAGAAACTGAATTGTAAGAGTACATACGGGAAACACATAAATAGAATGGGCCTAAAACCGACAACTTTGAGCTGATATATCTCTTTTTTGTAAAAGATATCAAAAAATGGTCAACTGATAAAGTAATTTTGGTATCATGATAAACAGTTAATCAGTTGATCATTTTTTACTATCTTTTACAAGAAATAAGATAAGTTTCCCCAAAGTTGAACAATAATGGGGGGCTTCAAACGCTGGTAGGCCGTCATTGGTCCGTTCTTTTGAAAAAAAAAAACGGAAAAACACCCAAGAGCCCATAGGCTACAGTACCGTATAAAAATAAATCATGTTTTGACATTTCAACTGTAAAATTTTTTGTGTTTCTTGGGGCTGTGATAATTTCATATGCTGTAAAAACTGAACTCCATGCTTTTAGTTCAATTGCAGATTTGTTTTTTCCTTGTGCCTCGACATTTTCTTAAAGCGTCGAATTTGAAAAAAATGAATACAAAAGAATCAACGATCACATTGAAGATTGTTTATGAGCAAACGTTTTGAACAAACTTCATTGAAACTGCATTTGAAATTTGAAAATTAGTAACCGGACAAAAAGTGGAAAAAAGTCACTTTCACAGCCGTAAAAATGTAGTTTAGGATTCCCCGATTCATCTGAAATTTTAAGAGTATACTAAACAAAAATAGAGTTTTATTTTTGTAATGGACAACTCTTTTGTGAAAGTCCTACAAAGCAAGATAAGCGGTTCTAAATTGGAAC</canonical>
            <polymorphic>ATGGTATTAGAGGAAAGGGAAAATAGGTTCGAGGTGTCTCAACCGCTGTTGGACCGCTCCTGACCCGTTCGTTTGGGAAAAAAACACGGAGAACCTCCAAGAGTTGCTTAAATACAGTAAGATATAATACTTTGATTTTTTCACTAAAAAAATAAAACTTCTGTTTCGTGGGGCTGTGATAATTTGAAACTGTGTGCTAATTTGATTTTTTTTTCGTGTCACAGAAACTGAATTGTAAGAATGTCACAGAAACTGAATTGTAAGAGTACATACGGGAAACACATAAATAGAATGGGCCTAAAACCGACAACTTTGAGCTGATATATCTCTTTTTTGTAAAAGATATCAAAAAATGGTCAACTGATAAAGTAATTTTGGTATCATGATAAACAGTTAATCAGTTGATCATTTTTTACTATCTTTTACAAGAAATAAGATAAGTTTCCCCAAAGTTGAACAATAATGGGGGGCTTCAAACGCTGGTAGGCCGTCATTGGTCYGTTCTTTTGAAAAAAAAAAACGGAAAAACACCCAAGAGCCCATAGGCTACAGTACCGTATAAAAATAAATCATGTTTTGACATTTCAACTGTAAAATTTTTTGTGTTTCTTGGGGCTGTGATAATTTCATATGCTGTAAAAACTGAACTCCATGCTTTTAGTTCAATTGCAGATTTGTTTTTTCCTTGTGCCTCGACATTTTCTTAAAGCGTCGAATTTGAAAAAAATGAATACAAAAGAATCAACGATCACATTGAAGATTGTTTATGAGCAAACGTTTTGAACAAACTTCATTGAAACTGCATTTGAAATTTGAAAATTAGTAACCGGACAAAAAGTGGAAAAAAGTCACTTTCACAGCCGTAAAAATGTAGTTTAGGATTCCCCGATTCATCTGAAATTTTAAGAGTATACTAAACAAAAATAGAGTTTTATTTTTGTAATGGACAACTCTTTTGTGAAAGTCCTACAAAGCAAGATAAGCGGTTCTAAATTGGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>504 445 51</canonical_bands>
                <polymorphic_bands>949 51</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>504 243 202 51</canonical_bands>
                <polymorphic_bands>706 243 51</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATAAATAGAATGGGCCTAAA</pcr_primer_p1>
		<pcr_primer_p2>TACTGTAGCCTATGGGCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>ACATAAATAGAATGGGCCTAAAACCGACAACTTTGAGCTGATATATCTCTTTTTTGTAAAAGATATCAAAAAATGGTCAACTGATAAAGTAATTTTGGTATCATGATAAACAGTTAATCAGTTGATCATTTTTTACTATCTTTTACAAGAAATAAGATAAGTTTCCCCAAAGTTGAACAATAATGGGGGGCTTCAAACGCTGGTAGGCCGTCATTGGTCCGTTCTTTTGAAAAAAAAAAACGGAAAAACACCCAAGAGCCCATAGGCTACAGTA</canonical_amplicon>
		<polymorphic_amplicon>ACATAAATAGAATGGGCCTAAAACCGACAACTTTGAGCTGATATATCTCTTTTTTGTAAAAGATATCAAAAAATGGTCAACTGATAAAGTAATTTTGGTATCATGATAAACAGTTAATCAGTTGATCATTTTTTACTATCTTTTACAAGAAATAAGATAAGTTTCCCCAAAGTTGAACAATAATGGGGGGCTTCAAACGCTGGTAGGCCGTCATTGGTCYGTTCTTTTGAAAAAAAAAAACGGAAAAACACCCAAGAGCCCATAGGCTACAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8852</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>225057</contig_pos>
        <strand>+</strand>
        <context>CATCGTTATA[C/T]CACATTTTGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCAAACACACACGTCTAGAAAATAGTCAAACATCACACCCATCGTTATA</left_flank>
        <right_flank>CACATTTTGCCCTCCATCCAAAATCAAACAACCAAAACCTTTTCCTACAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGTTTTGGTACCAAATGATAGATTTCAACAGGGCTCATCACGCCTGTATCATTCGAGCCGATCCCGGTCGATAACATGTCGACAAATGTGTTTGAATGACAGTTTTCGACCAATTTGATAAAAATCAGATTTTTGTCATTTAAGCATATTTTTCGATATGTTATCGGACCGCATTCCGGTTCAAATGATATAAGCGTGATGGGCCCGGTCGAGATCTATCATTTGGCACCAAAACCGTCTGAACTTTCGAATTATCTAAAACTTTGATTTTTAAACCAAAATAAGCTTAAAAGATCTTCCCATATCGACTTTGTGACAGTGTAGCTCATTAGGTTGCGGGTATCTTAATTTTCATGAAAATCCTCAATAGAGCACATTTGCAACAATGCTCTTGCTTCCAAAAACTTTTGACCCGGAAATTTCCAATGATCAGTTTTTTTGCTTCTAATCAAACACACACGTCTAGAAAATAGTCAAACATCACACCCATCGTTATACCACATTTTGCCCTCCATCCAAAATCAAACAACCAAAACCTTTTCCTACAGTACTCCTCGTCCTTTTTGTCTTGTTTCAATGGAACCAAAATAATTTGCCCTCTTTTTCTTCTCTCCTCGTGTCTTCTGTCTTTTATCAATGTCAGTCTCTCTTTTTTCCTAACAATATCAAAGTTCATGAGATCAAACCACCAAAAAAATAGTTCTAGTACTCGACAAAGAAGAAGAGCGAACAGAAATTTATGACGTAGAGAGGAAAAATTTGTACAGGTCGAAATGTTTATGGTCGAGATTTTCTTTGGAGAACATGAGGGGACCTATACTTCTCAAATGTGGACGGCTTCATATTAAATTTATGAAAATTATACTGAATTGGAAACAAAAAGAATTTTTTGGACCTTAAAAAAGTTGGATATTTCGAAGGGATAGAAAGTGATAGAAATGTGACGTTGTAGAACTTTGACATTGTAAAAGTGCAGTTATATTACTGTTACAGTTTTT</canonical>
            <polymorphic>ACAGTTTTGGTACCAAATGATAGATTTCAACAGGGCTCATCACGCCTGTATCATTCGAGCCGATCCCGGTCGATAACATGTCGACAAATGTGTTTGAATGACAGTTTTCGACCAATTTGATAAAAATCAGATTTTTGTCATTTAAGCATATTTTTCGATATGTTATCGGACCGCATTCCGGTTCAAATGATATAAGCGTGATGGGCCCGGTCGAGATCTATCATTTGGCACCAAAACCGTCTGAACTTTCGAATTATCTAAAACTTTGATTTTTAAACCAAAATAAGCTTAAAAGATCTTCCCATATCGACTTTGTGACAGTGTAGCTCATTAGGTTGCGGGTATCTTAATTTTCATGAAAATCCTCAATAGAGCACATTTGCAACAATGCTCTTGCTTCCAAAAACTTTTGACCCGGAAATTTCCAATGATCAGTTTTTTTGCTTCTAATCAAACACACACGTCTAGAAAATAGTCAAACATCACACCCATCGTTATAYCACATTTTGCCCTCCATCCAAAATCAAACAACCAAAACCTTTTCCTACAGTACTCCTCGTCCTTTTTGTCTTGTTTCAATGGAACCAAAATAATTTGCCCTCTTTTTCTTCTCTCCTCGTGTCTTCTGTCTTTTATCAATGTCAGTCTCTCTTTTTTCCTAACAATATCAAAGTTCATGAGATCAAACCACCAAAAAAATAGTTCTAGTACTCGACAAAGAAGAAGAGCGAACAGAAATTTATGACGTAGAGAGGAAAAATTTGTACAGGTCGAAATGTTTATGGTCGAGATTTTCTTTGGAGAACATGAGGGGACCTATACTTCTCAAATGTGGACGGCTTCATATTAAATTTATGAAAATTATACTGAATTGGAAACAAAAAGAATTTTTTGGACCTTAAAAAAGTTGGATATTTCGAAGGGATAGAAAGTGATAGAAATGTGACGTTGTAGAACTTTGACATTGTAAAAGTGCAGTTATATTACTGTTACAGTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTTTGTGACAGTGTAGCTCAT</pcr_primer_p1>
		<pcr_primer_p2>GAGGAGTACTGTAGGAAAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACTTTGTGACAGTGTAGCTCATTAGGTTGCGGGTATCTTAATTTTCATGAAAATCCTCAATAGAGCACATTTGCAACAATGCTCTTGCTTCCAAAAACTTTTGACCCGGAAATTTCCAATGATCAGTTTTTTTGCTTCTAATCAAACACACACGTCTAGAAAATAGTCAAACATCACACCCATCGTTATACCACATTTTGCCCTCCATCCAAAATCAAACAACCAAAACCTTTTCCTACAGTACTCCTC</canonical_amplicon>
		<polymorphic_amplicon>GACTTTGTGACAGTGTAGCTCATTAGGTTGCGGGTATCTTAATTTTCATGAAAATCCTCAATAGAGCACATTTGCAACAATGCTCTTGCTTCCAAAAACTTTTGACCCGGAAATTTCCAATGATCAGTTTTTTTGCTTCTAATCAAACACACACGTCTAGAAAATAGTCAAACATCACACCCATCGTTATAYCACATTTTGCCCTCCATCCAAAATCAAACAACCAAAACCTTTTCCTACAGTACTCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8853</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>226819</contig_pos>
        <strand>+</strand>
        <context>GGTTAATGGR[A/G]ATGAACTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGGAAGATTCCAAAAAGAGGATTTCGGAATGCAAATTGGGGTTAATGGG</left_flank>
        <right_flank>ATGAACTTTTTTTTTGATTTATGGGGGGTTTTTCGGAATTTCGGAAAGTA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGTAAATAAATATAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCCCGATTGTTAAAACTTGTATAAATTTCCACTAAAAATTACAATTTGAAACAGAAAAAATTGGAATAGATTGAAAAATTACAAATTTCAAAAAAATATTCTCTACAAGTCTAGAAATATAAAATTAAGACGATAGGAACAGAAAATTCGTAAAGATTTCCAAATGTTTCCATTCTAGATCCTAATCTCTTTTTCTCAAAAATGGAGTGAATTAGAGATTTCGTGTGACCGATTTCAAGAGAAAAAGGGACCACTCTGTAAAAAAACCTGGAAAATTAGACGAGGTACATTTTGATCGAAATCTCCTACGTTGCTATCTGGGAGATGCATCGAAAATAATTTTATAGAAATTACATATAAAGGAGGAAGATTCCAAAAAGAGGATTTCGGAATGCAAATTGGGGTTAATGGGGATGAACTTTTTTTTTGATTTATGGGGGGTTTTTCGGAATTTCGGAAAGTAGAGTCTAAAAAAGGAAACTGAAAAAAATTGAAGAAAAGAAATTGGCATAACTTCATGAGTATATTGAAACAGAGAAATGAAACCAAAATATTCTTGTGTTTTGCTGTCTCACACAATTGGCTCAAATTATTATTTAGTGCATCAATATGCTGAGTCAACACTGTTTGTTTTTCTCTTATCTTCCTTTTTGTTCAAAATAAGTTCACAGATCAATTACAAATTTCTTCTCAAAGTCAGAAAACAGAATGAAAGGGACACAATTTTGGAACATGCATCTCAAACTGAAGTGTAACTAAATTCTGAACCTTTCCATTAGGATCTGAAACCGAAAGTTTGAAAATCTGAAACCGAAAGTTCGAATTTTGTTAAAATGAACTTCTTCAAAACAACCCAAATTTTGAAAAAAAAATCAAAAATTTGTTATCTGAAACCGAGAATTTCAAAAATCCA</canonical>
            <polymorphic>GTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGTAAATAAATATAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCCCGATTGTTAAAACTTGTATAAATTTCCACTAAAAATTACAATTTGAAACAGAAAAAATTGGAATAGATTGAAAAATTACAAATTTCAAAAAAATATTCTCTACAAGTCTAGAAATATAAAATTAAGACGATAGGAACAGAAAATTCGTAAAGATTTCCAAATGTTTCCATTCTAGATCCTAATCTCTTTTTCTCAAAAATGGAGTGAATTAGAGATTTCGTGTGACCGATTTCAAGAGAAAAAGGGACCACTCTGTAAAAAAACCTGGAAAATTAGACGAGGTACATTTTGATCGAAATCTCCTACGTTGCTATCTGGGAGATGCATCGAAAATAATTTTATAGAAATTACATATAAAGGAGGAAGATTCCAAAAAGAGGATTTCGGAATGCAAATTGGGGTTAATGGGRATGAACTTTTTTTTTGATTTATGGGGGGTTTTTCGGAATTTCGGAAAGTAGAGTCTAAAAAAGGAAACTGAAAAAAATTGAAGAAAAGAAATTGGCATAACTTCATGAGTATATTGAAACAGAGAAATGAAACCAAAATATTCTTGTGTTTTGCTGTCTCACACAATTGGCTCAAATTATTATTTAGTGCATCAATATGCTGAGTCAACACTGTTTGTTTTTCTCTTATCTTCCTTTTTGTTCAAAATAAGTTCACAGATCAATTACAAATTTCTTCTCAAAGTCAGAAAACAGAATGAAAGGGACACAATTTTGGAACATGCATCTCAAACTGAAGTGTAACTAAATTCTGAACCTTTCCATTAGGATCTGAAACCGAAAGTTTGAAAATCTGAAACCGAAAGTTCGAATTTTGTTAAAATGAACTTCTTCAAAACAACCCAAATTTTGAAAAAAAAATCAAAAATTTGTTATCTGAAACCGAGAATTTCAAAAATCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAATTAGACGAGGTACATTT</pcr_primer_p1>
		<pcr_primer_p2>ATGAAGTTATGCCAATTTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAAAATTAGACGAGGTACATTTTGATCGAAATCTCCTACGTTGCTATCTGGGAGATGCATCGAAAATAATTTTATAGAAATTACATATAAAGGAGGAAGATTCCAAAAAGAGGATTTCGGAATGCAAATTGGGGTTAATGGGGATGAACTTTTTTTTTGATTTATGGGGGGTTTTTCGGAATTTCGGAAAGTAGAGTCTAAAAAAGGAAACTGAAAAAAATTGAAGAAAAGAAATTGGCATAACTTCAT</canonical_amplicon>
		<polymorphic_amplicon>GGAAAATTAGACGAGGTACATTTTGATCGAAATCTCCTACGTTGCTATCTGGGAGATGCATCGAAAATAATTTTATAGAAATTACATATAAAGGAGGAAGATTCCAAAAAGAGGATTTCGGAATGCAAATTGGGGTTAATGGGRATGAACTTTTTTTTTGATTTATGGGGGGTTTTTCGGAATTTCGGAAAGTAGAGTCTAAAAAAGGAAACTGAAAAAAATTGAAGAAAAGAAATTGGCATAACTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8854</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>226818</contig_pos>
        <strand>+</strand>
        <context>GGGTTAATGG[A/G]RATGAACTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAGGAAGATTCCAAAAAGAGGATTTCGGAATGCAAATTGGGGTTAATGG</left_flank>
        <right_flank>GATGAACTTTTTTTTTGATTTATGGGGGGTTTTTCGGAATTTCGGAAAGT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGTAAATAAATATAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCCCGATTGTTAAAACTTGTATAAATTTCCACTAAAAATTACAATTTGAAACAGAAAAAATTGGAATAGATTGAAAAATTACAAATTTCAAAAAAATATTCTCTACAAGTCTAGAAATATAAAATTAAGACGATAGGAACAGAAAATTCGTAAAGATTTCCAAATGTTTCCATTCTAGATCCTAATCTCTTTTTCTCAAAAATGGAGTGAATTAGAGATTTCGTGTGACCGATTTCAAGAGAAAAAGGGACCACTCTGTAAAAAAACCTGGAAAATTAGACGAGGTACATTTTGATCGAAATCTCCTACGTTGCTATCTGGGAGATGCATCGAAAATAATTTTATAGAAATTACATATAAAGGAGGAAGATTCCAAAAAGAGGATTTCGGAATGCAAATTGGGGTTAATGGGGATGAACTTTTTTTTTGATTTATGGGGGGTTTTTCGGAATTTCGGAAAGTAGAGTCTAAAAAAGGAAACTGAAAAAAATTGAAGAAAAGAAATTGGCATAACTTCATGAGTATATTGAAACAGAGAAATGAAACCAAAATATTCTTGTGTTTTGCTGTCTCACACAATTGGCTCAAATTATTATTTAGTGCATCAATATGCTGAGTCAACACTGTTTGTTTTTCTCTTATCTTCCTTTTTGTTCAAAATAAGTTCACAGATCAATTACAAATTTCTTCTCAAAGTCAGAAAACAGAATGAAAGGGACACAATTTTGGAACATGCATCTCAAACTGAAGTGTAACTAAATTCTGAACCTTTCCATTAGGATCTGAAACCGAAAGTTTGAAAATCTGAAACCGAAAGTTCGAATTTTGTTAAAATGAACTTCTTCAAAACAACCCAAATTTTGAAAAAAAAATCAAAAATTTGTTATCTGAAACCGAGAATTTCAAAAATCC</canonical>
            <polymorphic>GGTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGTAAATAAATATAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCCCGATTGTTAAAACTTGTATAAATTTCCACTAAAAATTACAATTTGAAACAGAAAAAATTGGAATAGATTGAAAAATTACAAATTTCAAAAAAATATTCTCTACAAGTCTAGAAATATAAAATTAAGACGATAGGAACAGAAAATTCGTAAAGATTTCCAAATGTTTCCATTCTAGATCCTAATCTCTTTTTCTCAAAAATGGAGTGAATTAGAGATTTCGTGTGACCGATTTCAAGAGAAAAAGGGACCACTCTGTAAAAAAACCTGGAAAATTAGACGAGGTACATTTTGATCGAAATCTCCTACGTTGCTATCTGGGAGATGCATCGAAAATAATTTTATAGAAATTACATATAAAGGAGGAAGATTCCAAAAAGAGGATTTCGGAATGCAAATTGGGGTTAATGGRGATGAACTTTTTTTTTGATTTATGGGGGGTTTTTCGGAATTTCGGAAAGTAGAGTCTAAAAAAGGAAACTGAAAAAAATTGAAGAAAAGAAATTGGCATAACTTCATGAGTATATTGAAACAGAGAAATGAAACCAAAATATTCTTGTGTTTTGCTGTCTCACACAATTGGCTCAAATTATTATTTAGTGCATCAATATGCTGAGTCAACACTGTTTGTTTTTCTCTTATCTTCCTTTTTGTTCAAAATAAGTTCACAGATCAATTACAAATTTCTTCTCAAAGTCAGAAAACAGAATGAAAGGGACACAATTTTGGAACATGCATCTCAAACTGAAGTGTAACTAAATTCTGAACCTTTCCATTAGGATCTGAAACCGAAAGTTTGAAAATCTGAAACCGAAAGTTCGAATTTTGTTAAAATGAACTTCTTCAAAACAACCCAAATTTTGAAAAAAAAATCAAAAATTTGTTATCTGAAACCGAGAATTTCAAAAATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAATTAGACGAGGTACATTT</pcr_primer_p1>
		<pcr_primer_p2>ATGAAGTTATGCCAATTTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAAAATTAGACGAGGTACATTTTGATCGAAATCTCCTACGTTGCTATCTGGGAGATGCATCGAAAATAATTTTATAGAAATTACATATAAAGGAGGAAGATTCCAAAAAGAGGATTTCGGAATGCAAATTGGGGTTAATGGGGATGAACTTTTTTTTTGATTTATGGGGGGTTTTTCGGAATTTCGGAAAGTAGAGTCTAAAAAAGGAAACTGAAAAAAATTGAAGAAAAGAAATTGGCATAACTTCAT</canonical_amplicon>
		<polymorphic_amplicon>GGAAAATTAGACGAGGTACATTTTGATCGAAATCTCCTACGTTGCTATCTGGGAGATGCATCGAAAATAATTTTATAGAAATTACATATAAAGGAGGAAGATTCCAAAAAGAGGATTTCGGAATGCAAATTGGGGTTAATGGRGATGAACTTTTTTTTTGATTTATGGGGGGTTTTTCGGAATTTCGGAAAGTAGAGTCTAAAAAAGGAAACTGAAAAAAATTGAAGAAAAGAAATTGGCATAACTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8855</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>226759</contig_pos>
        <strand>+</strand>
        <context>TATAGAAATT[A/C]CATATAAAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTCCTACGTTGCTATCTGGGAGATGCATCGAAAATAATTTTATAGAAATT</left_flank>
        <right_flank>CATATAAAGGAGGAAGATTCCAAAAAGAGGATTTCGGAATGCAAATTGGG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACAGAAAAAATCGGAAAAACTCAATTTTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGTAAATAAATATAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCCCGATTGTTAAAACTTGTATAAATTTCCACTAAAAATTACAATTTGAAACAGAAAAAATTGGAATAGATTGAAAAATTACAAATTTCAAAAAAATATTCTCTACAAGTCTAGAAATATAAAATTAAGACGATAGGAACAGAAAATTCGTAAAGATTTCCAAATGTTTCCATTCTAGATCCTAATCTCTTTTTCTCAAAAATGGAGTGAATTAGAGATTTCGTGTGACCGATTTCAAGAGAAAAAGGGACCACTCTGTAAAAAAACCTGGAAAATTAGACGAGGTACATTTTGATCGAAATCTCCTACGTTGCTATCTGGGAGATGCATCGAAAATAATTTTATAGAAATTACATATAAAGGAGGAAGATTCCAAAAAGAGGATTTCGGAATGCAAATTGGGGTTAATGGGGATGAACTTTTTTTTTGATTTATGGGGGGTTTTTCGGAATTTCGGAAAGTAGAGTCTAAAAAAGGAAACTGAAAAAAATTGAAGAAAAGAAATTGGCATAACTTCATGAGTATATTGAAACAGAGAAATGAAACCAAAATATTCTTGTGTTTTGCTGTCTCACACAATTGGCTCAAATTATTATTTAGTGCATCAATATGCTGAGTCAACACTGTTTGTTTTTCTCTTATCTTCCTTTTTGTTCAAAATAAGTTCACAGATCAATTACAAATTTCTTCTCAAAGTCAGAAAACAGAATGAAAGGGACACAATTTTGGAACATGCATCTCAAACTGAAGTGTAACTAAATTCTGAACCTTTCCATTAGGATCTGAAACCGAAAGTTTGAAAATCTGAAACCGAAAGTTCGAATTTTGTTAAAATGAACTTCTTCAAAACAAC</canonical>
            <polymorphic>AAACAGAAAAAATCGGAAAAACTCAATTTTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGTAAATAAATATAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCCCGATTGTTAAAACTTGTATAAATTTCCACTAAAAATTACAATTTGAAACAGAAAAAATTGGAATAGATTGAAAAATTACAAATTTCAAAAAAATATTCTCTACAAGTCTAGAAATATAAAATTAAGACGATAGGAACAGAAAATTCGTAAAGATTTCCAAATGTTTCCATTCTAGATCCTAATCTCTTTTTCTCAAAAATGGAGTGAATTAGAGATTTCGTGTGACCGATTTCAAGAGAAAAAGGGACCACTCTGTAAAAAAACCTGGAAAATTAGACGAGGTACATTTTGATCGAAATCTCCTACGTTGCTATCTGGGAGATGCATCGAAAATAATTTTATAGAAATTMCATATAAAGGAGGAAGATTCCAAAAAGAGGATTTCGGAATGCAAATTGGGGTTAATGGGGATGAACTTTTTTTTTGATTTATGGGGGGTTTTTCGGAATTTCGGAAAGTAGAGTCTAAAAAAGGAAACTGAAAAAAATTGAAGAAAAGAAATTGGCATAACTTCATGAGTATATTGAAACAGAGAAATGAAACCAAAATATTCTTGTGTTTTGCTGTCTCACACAATTGGCTCAAATTATTATTTAGTGCATCAATATGCTGAGTCAACACTGTTTGTTTTTCTCTTATCTTCCTTTTTGTTCAAAATAAGTTCACAGATCAATTACAAATTTCTTCTCAAAGTCAGAAAACAGAATGAAAGGGACACAATTTTGGAACATGCATCTCAAACTGAAGTGTAACTAAATTCTGAACCTTTCCATTAGGATCTGAAACCGAAAGTTTGAAAATCTGAAACCGAAAGTTCGAATTTTGTTAAAATGAACTTCTTCAAAACAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAATTAGACGAGGTACATTT</pcr_primer_p1>
		<pcr_primer_p2>ATGAAGTTATGCCAATTTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAAAATTAGACGAGGTACATTTTGATCGAAATCTCCTACGTTGCTATCTGGGAGATGCATCGAAAATAATTTTATAGAAATTACATATAAAGGAGGAAGATTCCAAAAAGAGGATTTCGGAATGCAAATTGGGGTTAATGGGGATGAACTTTTTTTTTGATTTATGGGGGGTTTTTCGGAATTTCGGAAAGTAGAGTCTAAAAAAGGAAACTGAAAAAAATTGAAGAAAAGAAATTGGCATAACTTCAT</canonical_amplicon>
		<polymorphic_amplicon>GGAAAATTAGACGAGGTACATTTTGATCGAAATCTCCTACGTTGCTATCTGGGAGATGCATCGAAAATAATTTTATAGAAATTMCATATAAAGGAGGAAGATTCCAAAAAGAGGATTTCGGAATGCAAATTGGGGTTAATGGGGATGAACTTTTTTTTTGATTTATGGGGGGTTTTTCGGAATTTCGGAAAGTAGAGTCTAAAAAAGGAAACTGAAAAAAATTGAAGAAAAGAAATTGGCATAACTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8856</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>268613</contig_pos>
        <strand>+</strand>
        <context>CAATATAATC[A/G]TCTGGGCTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATCGTAGAGACATCTGAAATTAGCGAATTTCAAATCAGCAATATAATC</left_flank>
        <right_flank>TCTGGGCTTAAATGAAAAATTGAAGAAAGCGAGAACAATGAAAAAAAGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGAAGCAAATCGGCATCTTTAATAATTGGCCCACAAGTTCAATTCTGAGGGGCTTTCACGCCTTTTTTAGACTCTTTTTCTACAAACTAACCTTACAAACATCCAACAACTTCTGATCCGTTCCCATATTCTGGCAACTAGCAGTCACTTCTGTCAGATTTGAATTATAAGACTCGAAACAGTATGTCATATTGTCATCACACACATTTTGGACGAAATTTGAAGAGTCTTCTCCGTTTACAATCCCTCGGGAACCTGCAAAAAAAATAGGGATCATAAAGGGAATAGGAGAATTGGAAAATTATATCTGGTCAAAATTTCAAATGTTAGTGATATTCTAGCTAATAAAATGTAAAGTTTTCGTGTTCGATTAGAGCGCATTTCCTCACCTTCGTAGCACTTTAATGTTGATGCTGATATGATAAAAAGTGTTGATAGAAAGATTAGTGATCGTAGAGACATCTGAAATTAGCGAATTTCAAATCAGCAATATAATCGTCTGGGCTTAAATGAAAAATTGAAGAAAGCGAGAACAATGAAAAAAAGAAAGTCTGAAAATATTGTCTGAGCATGTATAATATTTTATTTTAAATTTGACAAAAGTATGATGAATGTTTTTTTTTTCATTTCTATGACTCATAGTATGAATTTCATACCTCTAACCATAGAAAAGTAACATTTCTAACAGATACGAAATTCTAAAAATATAACTTGTATGTTAAAAATAAACAGAAGAAAAAACTCCCCATGAGCAAACTCACTAGCAGAAGGGAAATTTGTCATTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGGAAACCGCATAGCTCAACCGGTAGATGCGTGACACCTTCAATTTTTGACCCACAGGTTCAACTTCTCGAGGAACTTCTTTTAACAAAACTGTCTAGATGTCGTTCAATGTCCTTCCGCCTTCAAATGTGTCTGACAAGAACTTTTGAAACGGGGAAACTTTAATAAAT</canonical>
            <polymorphic>TTCGAAGCAAATCGGCATCTTTAATAATTGGCCCACAAGTTCAATTCTGAGGGGCTTTCACGCCTTTTTTAGACTCTTTTTCTACAAACTAACCTTACAAACATCCAACAACTTCTGATCCGTTCCCATATTCTGGCAACTAGCAGTCACTTCTGTCAGATTTGAATTATAAGACTCGAAACAGTATGTCATATTGTCATCACACACATTTTGGACGAAATTTGAAGAGTCTTCTCCGTTTACAATCCCTCGGGAACCTGCAAAAAAAATAGGGATCATAAAGGGAATAGGAGAATTGGAAAATTATATCTGGTCAAAATTTCAAATGTTAGTGATATTCTAGCTAATAAAATGTAAAGTTTTCGTGTTCGATTAGAGCGCATTTCCTCACCTTCGTAGCACTTTAATGTTGATGCTGATATGATAAAAAGTGTTGATAGAAAGATTAGTGATCGTAGAGACATCTGAAATTAGCGAATTTCAAATCAGCAATATAATCRTCTGGGCTTAAATGAAAAATTGAAGAAAGCGAGAACAATGAAAAAAAGAAAGTCTGAAAATATTGTCTGAGCATGTATAATATTTTATTTTAAATTTGACAAAAGTATGATGAATGTTTTTTTTTTCATTTCTATGACTCATAGTATGAATTTCATACCTCTAACCATAGAAAAGTAACATTTCTAACAGATACGAAATTCTAAAAATATAACTTGTATGTTAAAAATAAACAGAAGAAAAAACTCCCCATGAGCAAACTCACTAGCAGAAGGGAAATTTGTCATTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGGAAACCGCATAGCTCAACCGGTAGATGCGTGACACCTTCAATTTTTGACCCACAGGTTCAACTTCTCGAGGAACTTCTTTTAACAAAACTGTCTAGATGTCGTTCAATGTCCTTCCGCCTTCAAATGTGTCTGACAAGAACTTTTGAAACGGGGAAACTTTAATAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGATCGTAGAGACATCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTCGTATCTGTTAGAAATGTTACTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGTGATCGTAGAGACATCTGAAATTAGCGAATTTCAAATCAGCAATATAATCGTCTGGGCTTAAATGAAAAATTGAAGAAAGCGAGAACAATGAAAAAAAGAAAGTCTGAAAATATTGTCTGAGCATGTATAATATTTTATTTTAAATTTGACAAAAGTATGATGAATGTTTTTTTTTTCATTTCTATGACTCATAGTATGAATTTCATACCTCTAACCATAGAAAAGTAACATTTCTAACAGATACGAAA</canonical_amplicon>
		<polymorphic_amplicon>AGTGATCGTAGAGACATCTGAAATTAGCGAATTTCAAATCAGCAATATAATCRTCTGGGCTTAAATGAAAAATTGAAGAAAGCGAGAACAATGAAAAAAAGAAAGTCTGAAAATATTGTCTGAGCATGTATAATATTTTATTTTAAATTTGACAAAAGTATGATGAATGTTTTTTTTTTCATTTCTATGACTCATAGTATGAATTTCATACCTCTAACCATAGAAAAGTAACATTTCTAACAGATACGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8857</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>268688</contig_pos>
        <strand>+</strand>
        <context>GTCTGAGCAT[A/G]tataatattt</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAGCGAGAACAATGAAAAAAAGAAAGTCTGAAAATATTGTCTGAGCAT</left_flank>
        <right_flank>TATAATATTTTATTTTAAATTTGACAAAAGTATGATGAATGTTTTTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTTCTACAAACTAACCTTACAAACATCCAACAACTTCTGATCCGTTCCCATATTCTGGCAACTAGCAGTCACTTCTGTCAGATTTGAATTATAAGACTCGAAACAGTATGTCATATTGTCATCACACACATTTTGGACGAAATTTGAAGAGTCTTCTCCGTTTACAATCCCTCGGGAACCTGCAAAAAAAATAGGGATCATAAAGGGAATAGGAGAATTGGAAAATTATATCTGGTCAAAATTTCAAATGTTAGTGATATTCTAGCTAATAAAATGTAAAGTTTTCGTGTTCGATTAGAGCGCATTTCCTCACCTTCGTAGCACTTTAATGTTGATGCTGATATGATAAAAAGTGTTGATAGAAAGATTAGTGATCGTAGAGACATCTGAAATTAGCGAATTTCAAATCAGCAATATAATCGTCTGGGCTTAAATGAAAAATTGAAGAAAGCGAGAACAATGAAAAAAAGAAAGTCTGAAAATATTGTCTGAGCATGTATAATATTTTATTTTAAATTTGACAAAAGTATGATGAATGTTTTTTTTTTCATTTCTATGACTCATAGTATGAATTTCATACCTCTAACCATAGAAAAGTAACATTTCTAACAGATACGAAATTCTAAAAATATAACTTGTATGTTAAAAATAAACAGAAGAAAAAACTCCCCATGAGCAAACTCACTAGCAGAAGGGAAATTTGTCATTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGGAAACCGCATAGCTCAACCGGTAGATGCGTGACACCTTCAATTTTTGACCCACAGGTTCAACTTCTCGAGGAACTTCTTTTAACAAAACTGTCTAGATGTCGTTCAATGTCCTTCCGCCTTCAAATGTGTCTGACAAGAACTTTTGAAACGGGGAAACTTTAATAAATTGAAACGACACAGTCTTTCGAGATTGAAATTCATAAAAGCTGACTTTATCTTATGCTGATTTTAAAATAGTGATT</canonical>
            <polymorphic>CTTTTTCTACAAACTAACCTTACAAACATCCAACAACTTCTGATCCGTTCCCATATTCTGGCAACTAGCAGTCACTTCTGTCAGATTTGAATTATAAGACTCGAAACAGTATGTCATATTGTCATCACACACATTTTGGACGAAATTTGAAGAGTCTTCTCCGTTTACAATCCCTCGGGAACCTGCAAAAAAAATAGGGATCATAAAGGGAATAGGAGAATTGGAAAATTATATCTGGTCAAAATTTCAAATGTTAGTGATATTCTAGCTAATAAAATGTAAAGTTTTCGTGTTCGATTAGAGCGCATTTCCTCACCTTCGTAGCACTTTAATGTTGATGCTGATATGATAAAAAGTGTTGATAGAAAGATTAGTGATCGTAGAGACATCTGAAATTAGCGAATTTCAAATCAGCAATATAATCGTCTGGGCTTAAATGAAAAATTGAAGAAAGCGAGAACAATGAAAAAAAGAAAGTCTGAAAATATTGTCTGAGCATRTATAATATTTTATTTTAAATTTGACAAAAGTATGATGAATGTTTTTTTTTTCATTTCTATGACTCATAGTATGAATTTCATACCTCTAACCATAGAAAAGTAACATTTCTAACAGATACGAAATTCTAAAAATATAACTTGTATGTTAAAAATAAACAGAAGAAAAAACTCCCCATGAGCAAACTCACTAGCAGAAGGGAAATTTGTCATTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGGAAACCGCATAGCTCAACCGGTAGATGCGTGACACCTTCAATTTTTGACCCACAGGTTCAACTTCTCGAGGAACTTCTTTTAACAAAACTGTCTAGATGTCGTTCAATGTCCTTCCGCCTTCAAATGTGTCTGACAAGAACTTTTGAAACGGGGAAACTTTAATAAATTGAAACGACACAGTCTTTCGAGATTGAAATTCATAAAAGCTGACTTTATCTTATGCTGATTTTAAAATAGTGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>497 326 177</canonical_bands>
                <polymorphic_bands>674 326</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGATCGTAGAGACATCTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTCGTATCTGTTAGAAATGTTACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGATCGTAGAGACATCTGAAATTAGCGAATTTCAAATCAGCAATATAATCGTCTGGGCTTAAATGAAAAATTGAAGAAAGCGAGAACAATGAAAAAAAGAAAGTCTGAAAATATTGTCTGAGCATGTATAATATTTTATTTTAAATTTGACAAAAGTATGATGAATGTTTTTTTTTTCATTTCTATGACTCATAGTATGAATTTCATACCTCTAACCATAGAAAAGTAACATTTCTAACAGATACGAAA</canonical_amplicon>
		<polymorphic_amplicon>GTGATCGTAGAGACATCTGAAATTAGCGAATTTCAAATCAGCAATATAATCGTCTGGGCTTAAATGAAAAATTGAAGAAAGCGAGAACAATGAAAAAAAGAAAGTCTGAAAATATTGTCTGAGCATRTATAATATTTTATTTTAAATTTGACAAAAGTATGATGAATGTTTTTTTTTTCATTTCTATGACTCATAGTATGAATTTCATACCTCTAACCATAGAAAAGTAACATTTCTAACAGATACGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8880</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>268773</contig_pos>
        <strand></strand>
        <context>ATTTCATACC[T/C]CTAACCATAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATGAATGTTTTTTTTTTCATTTCTATGACTCATAGTATGAATTTCATACC</left_flank>
        <right_flank>CTAACCATAGAAAAGTAACATTTCTAACAGATACGAAATTCTAAAAATAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAATTATAAGACTCGAAACAGTATGTCATATTGTCATCACACACATTTTGGACGAAATTTGAAGAGTCTTCTCCGTTTACAATCCCTCGGGAACCTGCAAAAAAAATAGGGATCATAAAGGGAATAGGAGAATTGGAAAATTATATCTGGTCAAAATTTCAAATGTTAGTGATATTCTAGCTAATAAAATGTAAAGTTTTCGTGTTCGATTAGAGCGCATTTCCTCACCTTCGTAGCACTTTAATGTTGATGCTGATATGATAAAAAGTGTTGATAGAAAGATTAGTGATCGTAGAGACATCTGAAATTAGCGAATTTCAAATCAGCAATATAATCGTCTGGGCTTAAATGAAAAATTGAAGAAAGCGAGAACAATGAAAAAAAGAAAGTCTGAAAATATTGTCTGAGCATGTATAATATTTTATTTTAAATTTGACAAAAGTATGATGAATGTTTTTTTTTTCATTTCTATGACTCATAGTATGAATTTCATACCTCTAACCATAGAAAAGTAACATTTCTAACAGATACGAAATTCTAAAAATATAACTTGTATGTTAAAAATAAACAGAAGAAAAAACTCCCCATGAGCAAACTCACTAGCAGAAGGGAAATTTGTCATTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGGAAACCGCATAGCTCAACCGGTAGATGCGTGACACCTTCAATTTTTGACCCACAGGTTCAACTTCTCGAGGAACTTCTTTTAACAAAACTGTCTAGATGTCGTTCAATGTCCTTCCGCCTTCAAATGTGTCTGACAAGAACTTTTGAAACGGGGAAACTTTAATAAATTGAAACGACACAGTCTTTCGAGATTGAAATTCATAAAAGCTGACTTTATCTTATGCTGATTTTAAAATAGTGATTGTTTGCTTACAATTTAAAAAAAAAAAAAGCGAAAAAAGATTTGAATATTCAAAGTGCAGGGTACAGTAACCCACAAATCTTCCTA</canonical>
            <polymorphic>TTTGAATTATAAGACTCGAAACAGTATGTCATATTGTCATCACACACATTTTGGACGAAATTTGAAGAGTCTTCTCCGTTTACAATCCCTCGGGAACCTGCAAAAAAAATAGGGATCATAAAGGGAATAGGAGAATTGGAAAATTATATCTGGTCAAAATTTCAAATGTTAGTGATATTCTAGCTAATAAAATGTAAAGTTTTCGTGTTCGATTAGAGCGCATTTCCTCACCTTCGTAGCACTTTAATGTTGATGCTGATATGATAAAAAGTGTTGATAGAAAGATTAGTGATCGTAGAGACATCTGAAATTAGCGAATTTCAAATCAGCAATATAATCGTCTGGGCTTAAATGAAAAATTGAAGAAAGCGAGAACAATGAAAAAAAGAAAGTCTGAAAATATTGTCTGAGCATGTATAATATTTTATTTTAAATTTGACAAAAGTATGATGAATGTTTTTTTTTTCATTTCTATGACTCATAGTATGAATTTCATACCYCTAACCATAGAAAAGTAACATTTCTAACAGATACGAAATTCTAAAAATATAACTTGTATGTTAAAAATAAACAGAAGAAAAAACTCCCCATGAGCAAACTCACTAGCAGAAGGGAAATTTGTCATTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGGAAACCGCATAGCTCAACCGGTAGATGCGTGACACCTTCAATTTTTGACCCACAGGTTCAACTTCTCGAGGAACTTCTTTTAACAAAACTGTCTAGATGTCGTTCAATGTCCTTCCGCCTTCAAATGTGTCTGACAAGAACTTTTGAAACGGGGAAACTTTAATAAATTGAAACGACACAGTCTTTCGAGATTGAAATTCATAAAAGCTGACTTTATCTTATGCTGATTTTAAAATAGTGATTGTTTGCTTACAATTTAAAAAAAAAAAAAGCGAAAAAAGATTTGAATATTCAAAGTGCAGGGTACAGTAACCCACAAATCTTCCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGAAGAAAGCGAGAACAAT</pcr_primer_p1>
		<pcr_primer_p2>TCTGCTAGTGAGTTTGCTCAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTGAAGAAAGCGAGAACAATGAAAAAAAGAAAGTCTGAAAATATTGTCTGAGCATGTATAATATTTTATTTTAAATTTGACAAAAGTATGATGAATGTTTTTTTTTTCATTTCTATGACTCATAGTATGAATTTCATACCTCTAACCATAGAAAAGTAACATTTCTAACAGATACGAAATTCTAAAAATATAACTTGTATGTTAAAAATAAACAGAAGAAAAAACTCCCCATGAGCAAACTCACTAGCAGA</canonical_amplicon>
		<polymorphic_amplicon>ATTGAAGAAAGCGAGAACAATGAAAAAAAGAAAGTCTGAAAATATTGTCTGAGCATGTATAATATTTTATTTTAAATTTGACAAAAGTATGATGAATGTTTTTTTTTTCATTTCTATGACTCATAGTATGAATTTCATACCYCTAACCATAGAAAAGTAACATTTCTAACAGATACGAAATTCTAAAAATATAACTTGTATGTTAAAAATAAACAGAAGAAAAAACTCCCCATGAGCAAACTCACTAGCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8881</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>268892</contig_pos>
        <strand>+</strand>
        <context>GAAGGGAAAT[G/T]TGTCATTGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAACAGAAGAAAAAACTCCCCATGAGCAAACTCACTAGCAGAAGGGAAAT</left_flank>
        <right_flank>TGTCATTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGGGAATAGGAGAATTGGAAAATTATATCTGGTCAAAATTTCAAATGTTAGTGATATTCTAGCTAATAAAATGTAAAGTTTTCGTGTTCGATTAGAGCGCATTTCCTCACCTTCGTAGCACTTTAATGTTGATGCTGATATGATAAAAAGTGTTGATAGAAAGATTAGTGATCGTAGAGACATCTGAAATTAGCGAATTTCAAATCAGCAATATAATCGTCTGGGCTTAAATGAAAAATTGAAGAAAGCGAGAACAATGAAAAAAAGAAAGTCTGAAAATATTGTCTGAGCATGTATAATATTTTATTTTAAATTTGACAAAAGTATGATGAATGTTTTTTTTTTCATTTCTATGACTCATAGTATGAATTTCATACCTCTAACCATAGAAAAGTAACATTTCTAACAGATACGAAATTCTAAAAATATAACTTGTATGTTAAAAATAAACAGAAGAAAAAACTCCCCATGAGCAAACTCACTAGCAGAAGGGAAATTTGTCATTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGGAAACCGCATAGCTCAACCGGTAGATGCGTGACACCTTCAATTTTTGACCCACAGGTTCAACTTCTCGAGGAACTTCTTTTAACAAAACTGTCTAGATGTCGTTCAATGTCCTTCCGCCTTCAAATGTGTCTGACAAGAACTTTTGAAACGGGGAAACTTTAATAAATTGAAACGACACAGTCTTTCGAGATTGAAATTCATAAAAGCTGACTTTATCTTATGCTGATTTTAAAATAGTGATTGTTTGCTTACAATTTAAAAAAAAAAAAAGCGAAAAAAGATTTGAATATTCAAAGTGCAGGGTACAGTAACCCACAAATCTTCCTAAAATAAACAAAAGCTTTATGTAACTAATTTTTGTAAATAAGTTTTTTTTTTAATCTAAAAGTTGGTATATGGGCTTATTAAAACAGTTAAATAACGAATTTCTCAAAAATTAAAAAAAA</canonical>
            <polymorphic>AAAGGGAATAGGAGAATTGGAAAATTATATCTGGTCAAAATTTCAAATGTTAGTGATATTCTAGCTAATAAAATGTAAAGTTTTCGTGTTCGATTAGAGCGCATTTCCTCACCTTCGTAGCACTTTAATGTTGATGCTGATATGATAAAAAGTGTTGATAGAAAGATTAGTGATCGTAGAGACATCTGAAATTAGCGAATTTCAAATCAGCAATATAATCGTCTGGGCTTAAATGAAAAATTGAAGAAAGCGAGAACAATGAAAAAAAGAAAGTCTGAAAATATTGTCTGAGCATGTATAATATTTTATTTTAAATTTGACAAAAGTATGATGAATGTTTTTTTTTTCATTTCTATGACTCATAGTATGAATTTCATACCTCTAACCATAGAAAAGTAACATTTCTAACAGATACGAAATTCTAAAAATATAACTTGTATGTTAAAAATAAACAGAAGAAAAAACTCCCCATGAGCAAACTCACTAGCAGAAGGGAAATKTGTCATTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGGAAACCGCATAGCTCAACCGGTAGATGCGTGACACCTTCAATTTTTGACCCACAGGTTCAACTTCTCGAGGAACTTCTTTTAACAAAACTGTCTAGATGTCGTTCAATGTCCTTCCGCCTTCAAATGTGTCTGACAAGAACTTTTGAAACGGGGAAACTTTAATAAATTGAAACGACACAGTCTTTCGAGATTGAAATTCATAAAAGCTGACTTTATCTTATGCTGATTTTAAAATAGTGATTGTTTGCTTACAATTTAAAAAAAAAAAAAGCGAAAAAAGATTTGAATATTCAAAGTGCAGGGTACAGTAACCCACAAATCTTCCTAAAATAAACAAAAGCTTTATGTAACTAATTTTTGTAAATAAGTTTTTTTTTTAATCTAAAAGTTGGTATATGGGCTTATTAAAACAGTTAAATAACGAATTTCTCAAAAATTAAAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>252 229 159 116 79 56 48 38 23</canonical_bands>
                <polymorphic_bands>331 229 159 116 56 48 38 23</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>151 126 100 96 79 75 71 58 56 48 41 30 16 14 12 11 8 8</canonical_bands>
                <polymorphic_bands>175 151 126 100 75 71 58 56 48 41 30 16 14 12 11 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTAACAGATACGAAATTCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AACGACATCTAGACAGTTTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TTCTAACAGATACGAAATTCTAAAAATATAACTTGTATGTTAAAAATAAACAGAAGAAAAAACTCCCCATGAGCAAACTCACTAGCAGAAGGGAAATTTGTCATTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGGAAACCGCATAGCTCAACCGGTAGATGCGTGACACCTTCAATTTTTGACCCACAGGTTCAACTTCTCGAGGAACTTCTTTTAACAAAACTGTCTAGATGTCGTT</canonical_amplicon>
		<polymorphic_amplicon>TTCTAACAGATACGAAATTCTAAAAATATAACTTGTATGTTAAAAATAAACAGAAGAAAAAACTCCCCATGAGCAAACTCACTAGCAGAAGGGAAATKTGTCATTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGGAAACCGCATAGCTCAACCGGTAGATGCGTGACACCTTCAATTTTTGACCCACAGGTTCAACTTCTCGAGGAACTTCTTTTAACAAAACTGTCTAGATGTCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8883</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>268909</contig_pos>
        <strand></strand>
        <context>TGTGTGTGTg[A/T]gagagagaga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCCCATGAGCAAACTCACTAGCAGAAGGGAAATTTGTCATTGTGTGTGTG</left_flank>
        <right_flank>GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGGAAACCGCATAGCT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAAAATTATATCTGGTCAAAATTTCAAATGTTAGTGATATTCTAGCTAATAAAATGTAAAGTTTTCGTGTTCGATTAGAGCGCATTTCCTCACCTTCGTAGCACTTTAATGTTGATGCTGATATGATAAAAAGTGTTGATAGAAAGATTAGTGATCGTAGAGACATCTGAAATTAGCGAATTTCAAATCAGCAATATAATCGTCTGGGCTTAAATGAAAAATTGAAGAAAGCGAGAACAATGAAAAAAAGAAAGTCTGAAAATATTGTCTGAGCATGTATAATATTTTATTTTAAATTTGACAAAAGTATGATGAATGTTTTTTTTTTCATTTCTATGACTCATAGTATGAATTTCATACCTCTAACCATAGAAAAGTAACATTTCTAACAGATACGAAATTCTAAAAATATAACTTGTATGTTAAAAATAAACAGAAGAAAAAACTCCCCATGAGCAAACTCACTAGCAGAAGGGAAATTTGTCATTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGGAAACCGCATAGCTCAACCGGTAGATGCGTGACACCTTCAATTTTTGACCCACAGGTTCAACTTCTCGAGGAACTTCTTTTAACAAAACTGTCTAGATGTCGTTCAATGTCCTTCCGCCTTCAAATGTGTCTGACAAGAACTTTTGAAACGGGGAAACTTTAATAAATTGAAACGACACAGTCTTTCGAGATTGAAATTCATAAAAGCTGACTTTATCTTATGCTGATTTTAAAATAGTGATTGTTTGCTTACAATTTAAAAAAAAAAAAAGCGAAAAAAGATTTGAATATTCAAAGTGCAGGGTACAGTAACCCACAAATCTTCCTAAAATAAACAAAAGCTTTATGTAACTAATTTTTGTAAATAAGTTTTTTTTTTAATCTAAAAGTTGGTATATGGGCTTATTAAAACAGTTAAATAACGAATTTCTCAAAAATTAAAAAAAACGGAATTTGTTGAATAT</canonical>
            <polymorphic>TGGAAAATTATATCTGGTCAAAATTTCAAATGTTAGTGATATTCTAGCTAATAAAATGTAAAGTTTTCGTGTTCGATTAGAGCGCATTTCCTCACCTTCGTAGCACTTTAATGTTGATGCTGATATGATAAAAAGTGTTGATAGAAAGATTAGTGATCGTAGAGACATCTGAAATTAGCGAATTTCAAATCAGCAATATAATCGTCTGGGCTTAAATGAAAAATTGAAGAAAGCGAGAACAATGAAAAAAAGAAAGTCTGAAAATATTGTCTGAGCATGTATAATATTTTATTTTAAATTTGACAAAAGTATGATGAATGTTTTTTTTTTCATTTCTATGACTCATAGTATGAATTTCATACCTCTAACCATAGAAAAGTAACATTTCTAACAGATACGAAATTCTAAAAATATAACTTGTATGTTAAAAATAAACAGAAGAAAAAACTCCCCATGAGCAAACTCACTAGCAGAAGGGAAATTTGTCATTGTGTGTGTGWGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGGAAACCGCATAGCTCAACCGGTAGATGCGTGACACCTTCAATTTTTGACCCACAGGTTCAACTTCTCGAGGAACTTCTTTTAACAAAACTGTCTAGATGTCGTTCAATGTCCTTCCGCCTTCAAATGTGTCTGACAAGAACTTTTGAAACGGGGAAACTTTAATAAATTGAAACGACACAGTCTTTCGAGATTGAAATTCATAAAAGCTGACTTTATCTTATGCTGATTTTAAAATAGTGATTGTTTGCTTACAATTTAAAAAAAAAAAAAGCGAAAAAAGATTTGAATATTCAAAGTGCAGGGTACAGTAACCCACAAATCTTCCTAAAATAAACAAAAGCTTTATGTAACTAATTTTTGTAAATAAGTTTTTTTTTTAATCTAAAAGTTGGTATATGGGCTTATTAAAACAGTTAAATAACGAATTTCTCAAAAATTAAAAAAAACGGAATTTGTTGAATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTAACAGATACGAAATTCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AACGACATCTAGACAGTTTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TTCTAACAGATACGAAATTCTAAAAATATAACTTGTATGTTAAAAATAAACAGAAGAAAAAACTCCCCATGAGCAAACTCACTAGCAGAAGGGAAATTTGTCATTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGGAAACCGCATAGCTCAACCGGTAGATGCGTGACACCTTCAATTTTTGACCCACAGGTTCAACTTCTCGAGGAACTTCTTTTAACAAAACTGTCTAGATGTCGTT</canonical_amplicon>
		<polymorphic_amplicon>TTCTAACAGATACGAAATTCTAAAAATATAACTTGTATGTTAAAAATAAACAGAAGAAAAAACTCCCCATGAGCAAACTCACTAGCAGAAGGGAAATTTGTCATTGTGTGTGTGWGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGGAAACCGCATAGCTCAACCGGTAGATGCGTGACACCTTCAATTTTTGACCCACAGGTTCAACTTCTCGAGGAACTTCTTTTAACAAAACTGTCTAGATGTCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8908</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>272885</contig_pos>
        <strand>+</strand>
        <context>TGGCGTTTAC[C/T]CAGCAGCAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGGAATGTGCCACTGCCGATTGAGCTAAACGGTTGCTGCTGGCGTTTAC</left_flank>
        <right_flank>CAGCAGCAGAGCATATGAAATGGTTCGATTCTTCAACTTCCACATTTTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAACAGCGGCTTTCCAACTGTACGATTTTTTGAGGTTCTGGAAGAGTTATGGGGAAATTGAAAACGCCTAAAAAATAATGAAATTGATAAGAAAAAATGACCAGTACAAGAACTATTTTCTACTAGCGGAAATGGCGAGCTTATCAATTGGTGGAAAAAGTTTTGAAAATTGGAAAAAAAATAGATAACAGTGATTTCCGTTTTTATATATAATAGTTACATGAGGTATCTGAAACTGTTAAAAACTTTTTTCGAAAAATGAATTTTCTGTTTCAGACCGTTTTCATATTTTGGTTTTAAAAGTTAACTTGTATTAGCTTTGAAAGTAATATTTCATAGAGACAAGTATAACTTTTTAAATTTTTTTCGATTTCGAAACTGCCATTTTTAAAAGGTGAGGGACAGCAAAAAAGTCCCCGGAAGATTTGGACTTGTGGCCTAAATATTGTAGGAATGTGCCACTGCCGATTGAGCTAAACGGTTGCTGCTGGCGTTTACCCAGCAGCAGAGCATATGAAATGGTTCGATTCTTCAACTTCCACATTTTTCAGATTTATTTTTCAGAGTCAATGATGATGTGCCAAGGTAAATGCATGAAAAATATTTTGGGTTATTATTCGACGATAGAACAAATTATGAAGTTGAAATATAATAGATTTATACGAACATTTGAAACAAAATTTTTGGTTGACCGTTCCAGGAATTAGAAAAAAATTTTTTTCAATTAAATGAACAATTCGAAACAGAGAAGATACATAAATTGAAATGTCGGTATATGATACAGGCCTTGAAAATTCGAAAAATAAATACTTTTGAGGAAAATCAAATTGAAACTTTTCCGTTTCATATATTGTTTGAAGTTTTATTTTATTTTCATGTTGTAATTCCACCATACTTGTAACGGGCCGGGCCGGACTTTTCCCGAATTTCGGAGGCCCGGTTTTAGACCTGCAATTGTGATCGCGCCAAGTTTTTTTTCTGTAGATCAAAAATTAATTT</canonical>
            <polymorphic>AGAACAGCGGCTTTCCAACTGTACGATTTTTTGAGGTTCTGGAAGAGTTATGGGGAAATTGAAAACGCCTAAAAAATAATGAAATTGATAAGAAAAAATGACCAGTACAAGAACTATTTTCTACTAGCGGAAATGGCGAGCTTATCAATTGGTGGAAAAAGTTTTGAAAATTGGAAAAAAAATAGATAACAGTGATTTCCGTTTTTATATATAATAGTTACATGAGGTATCTGAAACTGTTAAAAACTTTTTTCGAAAAATGAATTTTCTGTTTCAGACCGTTTTCATATTTTGGTTTTAAAAGTTAACTTGTATTAGCTTTGAAAGTAATATTTCATAGAGACAAGTATAACTTTTTAAATTTTTTTCGATTTCGAAACTGCCATTTTTAAAAGGTGAGGGACAGCAAAAAAGTCCCCGGAAGATTTGGACTTGTGGCCTAAATATTGTAGGAATGTGCCACTGCCGATTGAGCTAAACGGTTGCTGCTGGCGTTTACYCAGCAGCAGAGCATATGAAATGGTTCGATTCTTCAACTTCCACATTTTTCAGATTTATTTTTCAGAGTCAATGATGATGTGCCAAGGTAAATGCATGAAAAATATTTTGGGTTATTATTCGACGATAGAACAAATTATGAAGTTGAAATATAATAGATTTATACGAACATTTGAAACAAAATTTTTGGTTGACCGTTCCAGGAATTAGAAAAAAATTTTTTTCAATTAAATGAACAATTCGAAACAGAGAAGATACATAAATTGAAATGTCGGTATATGATACAGGCCTTGAAAATTCGAAAAATAAATACTTTTGAGGAAAATCAAATTGAAACTTTTCCGTTTCATATATTGTTTGAAGTTTTATTTTATTTTCATGTTGTAATTCCACCATACTTGTAACGGGCCGGGCCGGACTTTTCCCGAATTTCGGAGGCCCGGTTTTAGACCTGCAATTGTGATCGCGCCAAGTTTTTTTTCTGTAGATCAAAAATTAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATTGTAGGAATGTGCCACT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTTGTTTCAAATGTTCGTA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AATATTGTAGGAATGTGCCACTGCCGATTGAGCTAAACGGTTGCTGCTGGCGTTTACCCAGCAGCAGAGCATATGAAATGGTTCGATTCTTCAACTTCCACATTTTTCAGATTTATTTTTCAGAGTCAATGATGATGTGCCAAGGTAAATGCATGAAAAATATTTTGGGTTATTATTCGACGATAGAACAAATTATGAAGTTGAAATATAATAGATTTATACGAACATTTGAAACAAAATTT</canonical_amplicon>
		<polymorphic_amplicon>AATATTGTAGGAATGTGCCACTGCCGATTGAGCTAAACGGTTGCTGCTGGCGTTTACYCAGCAGCAGAGCATATGAAATGGTTCGATTCTTCAACTTCCACATTTTTCAGATTTATTTTTCAGAGTCAATGATGATGTGCCAAGGTAAATGCATGAAAAATATTTTGGGTTATTATTCGACGATAGAACAAATTATGAAGTTGAAATATAATAGATTTATACGAACATTTGAAACAAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8909</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>272822</contig_pos>
        <strand>+</strand>
        <context>TTGGACTTGT[A/G]GCCTAAATAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTAAAAGGTGAGGGACAGCAAAAAAGTCCCCGGAAGATTTGGACTTGT</left_flank>
        <right_flank>GCCTAAATATTGTAGGAATGTGCCACTGCCGATTGAGCTAAACGGTTGCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTATAATCCTTATATGTATTGTTTCAATTTTAAAGAGGTCAGTTGCGTGAGGACTGATAAGAGAACAGCGGCTTTCCAACTGTACGATTTTTTGAGGTTCTGGAAGAGTTATGGGGAAATTGAAAACGCCTAAAAAATAATGAAATTGATAAGAAAAAATGACCAGTACAAGAACTATTTTCTACTAGCGGAAATGGCGAGCTTATCAATTGGTGGAAAAAGTTTTGAAAATTGGAAAAAAAATAGATAACAGTGATTTCCGTTTTTATATATAATAGTTACATGAGGTATCTGAAACTGTTAAAAACTTTTTTCGAAAAATGAATTTTCTGTTTCAGACCGTTTTCATATTTTGGTTTTAAAAGTTAACTTGTATTAGCTTTGAAAGTAATATTTCATAGAGACAAGTATAACTTTTTAAATTTTTTTCGATTTCGAAACTGCCATTTTTAAAAGGTGAGGGACAGCAAAAAAGTCCCCGGAAGATTTGGACTTGTGGCCTAAATATTGTAGGAATGTGCCACTGCCGATTGAGCTAAACGGTTGCTGCTGGCGTTTACCCAGCAGCAGAGCATATGAAATGGTTCGATTCTTCAACTTCCACATTTTTCAGATTTATTTTTCAGAGTCAATGATGATGTGCCAAGGTAAATGCATGAAAAATATTTTGGGTTATTATTCGACGATAGAACAAATTATGAAGTTGAAATATAATAGATTTATACGAACATTTGAAACAAAATTTTTGGTTGACCGTTCCAGGAATTAGAAAAAAATTTTTTTCAATTAAATGAACAATTCGAAACAGAGAAGATACATAAATTGAAATGTCGGTATATGATACAGGCCTTGAAAATTCGAAAAATAAATACTTTTGAGGAAAATCAAATTGAAACTTTTCCGTTTCATATATTGTTTGAAGTTTTATTTTATTTTCATGTTGTAATTCCACCATACTTGTAACGGGCCGGGCCGGACTTTTCCCGAATTTCGGAGGC</canonical>
            <polymorphic>CAGTATAATCCTTATATGTATTGTTTCAATTTTAAAGAGGTCAGTTGCGTGAGGACTGATAAGAGAACAGCGGCTTTCCAACTGTACGATTTTTTGAGGTTCTGGAAGAGTTATGGGGAAATTGAAAACGCCTAAAAAATAATGAAATTGATAAGAAAAAATGACCAGTACAAGAACTATTTTCTACTAGCGGAAATGGCGAGCTTATCAATTGGTGGAAAAAGTTTTGAAAATTGGAAAAAAAATAGATAACAGTGATTTCCGTTTTTATATATAATAGTTACATGAGGTATCTGAAACTGTTAAAAACTTTTTTCGAAAAATGAATTTTCTGTTTCAGACCGTTTTCATATTTTGGTTTTAAAAGTTAACTTGTATTAGCTTTGAAAGTAATATTTCATAGAGACAAGTATAACTTTTTAAATTTTTTTCGATTTCGAAACTGCCATTTTTAAAAGGTGAGGGACAGCAAAAAAGTCCCCGGAAGATTTGGACTTGTRGCCTAAATATTGTAGGAATGTGCCACTGCCGATTGAGCTAAACGGTTGCTGCTGGCGTTTACCCAGCAGCAGAGCATATGAAATGGTTCGATTCTTCAACTTCCACATTTTTCAGATTTATTTTTCAGAGTCAATGATGATGTGCCAAGGTAAATGCATGAAAAATATTTTGGGTTATTATTCGACGATAGAACAAATTATGAAGTTGAAATATAATAGATTTATACGAACATTTGAAACAAAATTTTTGGTTGACCGTTCCAGGAATTAGAAAAAAATTTTTTTCAATTAAATGAACAATTCGAAACAGAGAAGATACATAAATTGAAATGTCGGTATATGATACAGGCCTTGAAAATTCGAAAAATAAATACTTTTGAGGAAAATCAAATTGAAACTTTTCCGTTTCATATATTGTTTGAAGTTTTATTTTATTTTCATGTTGTAATTCCACCATACTTGTAACGGGCCGGGCCGGACTTTTCCCGAATTTCGGAGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 348 120 26 5</canonical_bands>
                <polymorphic_bands>849 120 26 5</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>312 178 130 120 120 73 36 26 5</canonical_bands>
                <polymorphic_bands>312 178 156 130 120 73 26 5</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 348 151</canonical_bands>
                <polymorphic_bands>849 151</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>309 204 166 80 51 47 40 39 39 22 3</canonical_bands>
                <polymorphic_bands>309 204 166 80 61 51 47 40 39 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTAAAAGGTGAGGGACA</pcr_primer_p1>
		<pcr_primer_p2>CGTCGAATAATAACCCAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTAAAAGGTGAGGGACAGCAAAAAAGTCCCCGGAAGATTTGGACTTGTGGCCTAAATATTGTAGGAATGTGCCACTGCCGATTGAGCTAAACGGTTGCTGCTGGCGTTTACCCAGCAGCAGAGCATATGAAATGGTTCGATTCTTCAACTTCCACATTTTTCAGATTTATTTTTCAGAGTCAATGATGATGTGCCAAGGTAAATGCATGAAAAATATTTTGGGTTATTATTCGACG</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTAAAAGGTGAGGGACAGCAAAAAAGTCCCCGGAAGATTTGGACTTGTRGCCTAAATATTGTAGGAATGTGCCACTGCCGATTGAGCTAAACGGTTGCTGCTGGCGTTTACCCAGCAGCAGAGCATATGAAATGGTTCGATTCTTCAACTTCCACATTTTTCAGATTTATTTTTCAGAGTCAATGATGATGTGCCAAGGTAAATGCATGAAAAATATTTTGGGTTATTATTCGACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8910</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>272671</contig_pos>
        <strand>+</strand>
        <context>AGACCGTTTT[A/C]ATATTTTGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACTGTTAAAAACTTTTTTCGAAAAATGAATTTTCTGTTTCAGACCGTTTT</left_flank>
        <right_flank>ATATTTTGGTTTTAAAAGTTAACTTGTATTAGCTTTGAAAGTAATATTTC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTATAGATCATTGAATCAAACACCACGCCATTTCAATTTGCCTTCCTTCGTTGATCAGTCAGTCTGATCAAATAGAACGGCAAAGTGCGTCTTGTGATTTTTTAAACAAAAATTTAAAGCAAAAATAAAGACAGTATAAAATCAAAAACAGTATAATCCTTATATGTATTGTTTCAATTTTAAAGAGGTCAGTTGCGTGAGGACTGATAAGAGAACAGCGGCTTTCCAACTGTACGATTTTTTGAGGTTCTGGAAGAGTTATGGGGAAATTGAAAACGCCTAAAAAATAATGAAATTGATAAGAAAAAATGACCAGTACAAGAACTATTTTCTACTAGCGGAAATGGCGAGCTTATCAATTGGTGGAAAAAGTTTTGAAAATTGGAAAAAAAATAGATAACAGTGATTTCCGTTTTTATATATAATAGTTACATGAGGTATCTGAAACTGTTAAAAACTTTTTTCGAAAAATGAATTTTCTGTTTCAGACCGTTTTCATATTTTGGTTTTAAAAGTTAACTTGTATTAGCTTTGAAAGTAATATTTCATAGAGACAAGTATAACTTTTTAAATTTTTTTCGATTTCGAAACTGCCATTTTTAAAAGGTGAGGGACAGCAAAAAAGTCCCCGGAAGATTTGGACTTGTGGCCTAAATATTGTAGGAATGTGCCACTGCCGATTGAGCTAAACGGTTGCTGCTGGCGTTTACCCAGCAGCAGAGCATATGAAATGGTTCGATTCTTCAACTTCCACATTTTTCAGATTTATTTTTCAGAGTCAATGATGATGTGCCAAGGTAAATGCATGAAAAATATTTTGGGTTATTATTCGACGATAGAACAAATTATGAAGTTGAAATATAATAGATTTATACGAACATTTGAAACAAAATTTTTGGTTGACCGTTCCAGGAATTAGAAAAAAATTTTTTTCAATTAAATGAACAATTCGAAACAGAGAAGATACATAAATTGAAATGTCGGTATATGATACAGG</canonical>
            <polymorphic>CAATTATAGATCATTGAATCAAACACCACGCCATTTCAATTTGCCTTCCTTCGTTGATCAGTCAGTCTGATCAAATAGAACGGCAAAGTGCGTCTTGTGATTTTTTAAACAAAAATTTAAAGCAAAAATAAAGACAGTATAAAATCAAAAACAGTATAATCCTTATATGTATTGTTTCAATTTTAAAGAGGTCAGTTGCGTGAGGACTGATAAGAGAACAGCGGCTTTCCAACTGTACGATTTTTTGAGGTTCTGGAAGAGTTATGGGGAAATTGAAAACGCCTAAAAAATAATGAAATTGATAAGAAAAAATGACCAGTACAAGAACTATTTTCTACTAGCGGAAATGGCGAGCTTATCAATTGGTGGAAAAAGTTTTGAAAATTGGAAAAAAAATAGATAACAGTGATTTCCGTTTTTATATATAATAGTTACATGAGGTATCTGAAACTGTTAAAAACTTTTTTCGAAAAATGAATTTTCTGTTTCAGACCGTTTTMATATTTTGGTTTTAAAAGTTAACTTGTATTAGCTTTGAAAGTAATATTTCATAGAGACAAGTATAACTTTTTAAATTTTTTTCGATTTCGAAACTGCCATTTTTAAAAGGTGAGGGACAGCAAAAAAGTCCCCGGAAGATTTGGACTTGTGGCCTAAATATTGTAGGAATGTGCCACTGCCGATTGAGCTAAACGGTTGCTGCTGGCGTTTACCCAGCAGCAGAGCATATGAAATGGTTCGATTCTTCAACTTCCACATTTTTCAGATTTATTTTTCAGAGTCAATGATGATGTGCCAAGGTAAATGCATGAAAAATATTTTGGGTTATTATTCGACGATAGAACAAATTATGAAGTTGAAATATAATAGATTTATACGAACATTTGAAACAAAATTTTTGGTTGACCGTTCCAGGAATTAGAAAAAAATTTTTTTCAATTAAATGAACAATTCGAAACAGAGAAGATACATAAATTGAAATGTCGGTATATGATACAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGGTATCTGAAACTGTTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAGTGGCACATTCCTACAATA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TGAGGTATCTGAAACTGTTAAAAACTTTTTTCGAAAAATGAATTTTCTGTTTCAGACCGTTTTCATATTTTGGTTTTAAAAGTTAACTTGTATTAGCTTTGAAAGTAATATTTCATAGAGACAAGTATAACTTTTTAAATTTTTTTCGATTTCGAAACTGCCATTTTTAAAAGGTGAGGGACAGCAAAAAAGTCCCCGGAAGATTTGGACTTGTGGCCTAAATATTGTAGGAATGTGCCACTG</canonical_amplicon>
		<polymorphic_amplicon>TGAGGTATCTGAAACTGTTAAAAACTTTTTTCGAAAAATGAATTTTCTGTTTCAGACCGTTTTMATATTTTGGTTTTAAAAGTTAACTTGTATTAGCTTTGAAAGTAATATTTCATAGAGACAAGTATAACTTTTTAAATTTTTTTCGATTTCGAAACTGCCATTTTTAAAAGGTGAGGGACAGCAAAAAAGTCCCCGGAAGATTTGGACTTGTGGCCTAAATATTGTAGGAATGTGCCACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8911</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>379262</contig_pos>
        <strand>+</strand>
        <context>AAAATAAAGC[A/G]AATTGCAGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGTGGACTTGTGAGTATTCGAAATTATTCTTGAGCTTGAAAAATAAAGC</left_flank>
        <right_flank>AATTGCAGATTGTACGCCAGAAAGGCCAGCGTAGAATGTCGAGATGCGGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCTCACGAGTATCTTCTAGAGCAGATCGGACTGAAAAAAGGTAATTTGTAGCATTTTTAGGTGTACAAAAATGCCGTGCTACGGTCGGCCGCGGCCAGCCACCACTGGCCCGGTTGTATTACCCCAAAAATAATTTAAAGCAAGTTACTGTATTTTCAGAACAAGATGAACAAGAGGCTGGTTCTGCGGATCTTATAATTGCCCAAATCCGATCATCATTCGATCGCCCACTTCCTCCACCATTGAGAAATCATCAATTCAAACCAGAAAATCAGGGATTAATTGAACAAGAGCGGGTGGAATATTCACCAGAGATTTATGATCCAATCCCTATGCCTGAGCGGGACCCGAACTTGGATATTCAAATGGAAGATATTCAAAAAGTGTATGTCAAAAATGCTCTCGATACATTGGAAGATATAAAACCGGATGATGAGGCTTGCTACTACGTGGACTTGTGAGTATTCGAAATTATTCTTGAGCTTGAAAAATAAAGCGAATTGCAGATTGTACGCCAGAAAGGCCAGCGTAGAATGTCGAGATGCGGCTGATAAACTAGAAAATTTGAAACTTGAGAAATTGAAACTTGTGATTGGTTTTGAAAAAATTCAACTACAAATTTCCCGAAAGTTGGACGAAGATTATGAAACAACTATCACATATGGAAGAAGTGAAGAGGGTTTACATCTGATGGAGTTTGAGAACACATTCTTCCAAGATGGGACTCATTACAAGATTATGGCAGCTGTCGACTTCTTCTTCTTCCTCAGAATCCCTGGACAATTCCTTAATCAGATCTCCATCGAATTCGAGGAGTACCGATCTGAACAACAACCTCCTCAATTCATAGATATGTCGATTCTCGGTGTCATCGCTAAACTGTTCAAGGAAAGACTTGGCGATCGTAAGATCCTTGTGAGAAATTTCAAGTATATGTTCAACAGGGGAGATGATTATCTTGAACCAAAAAAGAGCTACTTCCATGAATTTCTACAAGT</canonical>
            <polymorphic>AAGCTCACGAGTATCTTCTAGAGCAGATCGGACTGAAAAAAGGTAATTTGTAGCATTTTTAGGTGTACAAAAATGCCGTGCTACGGTCGGCCGCGGCCAGCCACCACTGGCCCGGTTGTATTACCCCAAAAATAATTTAAAGCAAGTTACTGTATTTTCAGAACAAGATGAACAAGAGGCTGGTTCTGCGGATCTTATAATTGCCCAAATCCGATCATCATTCGATCGCCCACTTCCTCCACCATTGAGAAATCATCAATTCAAACCAGAAAATCAGGGATTAATTGAACAAGAGCGGGTGGAATATTCACCAGAGATTTATGATCCAATCCCTATGCCTGAGCGGGACCCGAACTTGGATATTCAAATGGAAGATATTCAAAAAGTGTATGTCAAAAATGCTCTCGATACATTGGAAGATATAAAACCGGATGATGAGGCTTGCTACTACGTGGACTTGTGAGTATTCGAAATTATTCTTGAGCTTGAAAAATAAAGCRAATTGCAGATTGTACGCCAGAAAGGCCAGCGTAGAATGTCGAGATGCGGCTGATAAACTAGAAAATTTGAAACTTGAGAAATTGAAACTTGTGATTGGTTTTGAAAAAATTCAACTACAAATTTCCCGAAAGTTGGACGAAGATTATGAAACAACTATCACATATGGAAGAAGTGAAGAGGGTTTACATCTGATGGAGTTTGAGAACACATTCTTCCAAGATGGGACTCATTACAAGATTATGGCAGCTGTCGACTTCTTCTTCTTCCTCAGAATCCCTGGACAATTCCTTAATCAGATCTCCATCGAATTCGAGGAGTACCGATCTGAACAACAACCTCCTCAATTCATAGATATGTCGATTCTCGGTGTCATCGCTAAACTGTTCAAGGAAAGACTTGGCGATCGTAAGATCCTTGTGAGAAATTTCAAGTATATGTTCAACAGGGGAGATGATTATCTTGAACCAAAAAAGAGCTACTTCCATGAATTTCTACAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTGTATGTCAAAAATGCTCTC</pcr_primer_p1>
		<pcr_primer_p2>AACTTTCGGGAAATTTGTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAGTGTATGTCAAAAATGCTCTCGATACATTGGAAGATATAAAACCGGATGATGAGGCTTGCTACTACGTGGACTTGTGAGTATTCGAAATTATTCTTGAGCTTGAAAAATAAAGCGAATTGCAGATTGTACGCCAGAAAGGCCAGCGTAGAATGTCGAGATGCGGCTGATAAACTAGAAAATTTGAAACTTGAGAAATTGAAACTTGTGATTGGTTTTGAAAAAATTCAACTACAAATTTCCCGAAAGTT</canonical_amplicon>
		<polymorphic_amplicon>AAGTGTATGTCAAAAATGCTCTCGATACATTGGAAGATATAAAACCGGATGATGAGGCTTGCTACTACGTGGACTTGTGAGTATTCGAAATTATTCTTGAGCTTGAAAAATAAAGCRAATTGCAGATTGTACGCCAGAAAGGCCAGCGTAGAATGTCGAGATGCGGCTGATAAACTAGAAAATTTGAAACTTGAGAAATTGAAACTTGTGATTGGTTTTGAAAAAATTCAACTACAAATTTCCCGAAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8912</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>379463</contig_pos>
        <strand>+</strand>
        <context>TGATGGAGTT[C/T]GAGAACACAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAACTATCACATATGGAAGAAGTGAAGAGGGTTTACATCTGATGGAGTT</left_flank>
        <right_flank>GAGAACACATTCTTCCAAGATGGGACTCATTACAAGATTATGGCAGCTGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCCCAAATCCGATCATCATTCGATCGCCCACTTCCTCCACCATTGAGAAATCATCAATTCAAACCAGAAAATCAGGGATTAATTGAACAAGAGCGGGTGGAATATTCACCAGAGATTTATGATCCAATCCCTATGCCTGAGCGGGACCCGAACTTGGATATTCAAATGGAAGATATTCAAAAAGTGTATGTCAAAAATGCTCTCGATACATTGGAAGATATAAAACCGGATGATGAGGCTTGCTACTACGTGGACTTGTGAGTATTCGAAATTATTCTTGAGCTTGAAAAATAAAGCGAATTGCAGATTGTACGCCAGAAAGGCCAGCGTAGAATGTCGAGATGCGGCTGATAAACTAGAAAATTTGAAACTTGAGAAATTGAAACTTGTGATTGGTTTTGAAAAAATTCAACTACAAATTTCCCGAAAGTTGGACGAAGATTATGAAACAACTATCACATATGGAAGAAGTGAAGAGGGTTTACATCTGATGGAGTTTGAGAACACATTCTTCCAAGATGGGACTCATTACAAGATTATGGCAGCTGTCGACTTCTTCTTCTTCCTCAGAATCCCTGGACAATTCCTTAATCAGATCTCCATCGAATTCGAGGAGTACCGATCTGAACAACAACCTCCTCAATTCATAGATATGTCGATTCTCGGTGTCATCGCTAAACTGTTCAAGGAAAGACTTGGCGATCGTAAGATCCTTGTGAGAAATTTCAAGTATATGTTCAACAGGGGAGATGATTATCTTGAACCAAAAAAGAGCTACTTCCATGAATTTCTACAAGTTCTGTGGCCCCAAAAACTTCGTCATCTTGTACTTCGAATGTGGGATGATAAAGAAGTTCTTGCAAGTGGATCCTACGACCCAGTGATTCTAAATTGGCCTCGATATTCAGTGGCGTCAAGTTTGGAACAATGGAGAGATGCAAGAACTCTTGATATTTGTGACCCACTTATGTGCAAGTACTGGATAAGTCTTCTTGAAAT</canonical>
            <polymorphic>TGCCCAAATCCGATCATCATTCGATCGCCCACTTCCTCCACCATTGAGAAATCATCAATTCAAACCAGAAAATCAGGGATTAATTGAACAAGAGCGGGTGGAATATTCACCAGAGATTTATGATCCAATCCCTATGCCTGAGCGGGACCCGAACTTGGATATTCAAATGGAAGATATTCAAAAAGTGTATGTCAAAAATGCTCTCGATACATTGGAAGATATAAAACCGGATGATGAGGCTTGCTACTACGTGGACTTGTGAGTATTCGAAATTATTCTTGAGCTTGAAAAATAAAGCGAATTGCAGATTGTACGCCAGAAAGGCCAGCGTAGAATGTCGAGATGCGGCTGATAAACTAGAAAATTTGAAACTTGAGAAATTGAAACTTGTGATTGGTTTTGAAAAAATTCAACTACAAATTTCCCGAAAGTTGGACGAAGATTATGAAACAACTATCACATATGGAAGAAGTGAAGAGGGTTTACATCTGATGGAGTTYGAGAACACATTCTTCCAAGATGGGACTCATTACAAGATTATGGCAGCTGTCGACTTCTTCTTCTTCCTCAGAATCCCTGGACAATTCCTTAATCAGATCTCCATCGAATTCGAGGAGTACCGATCTGAACAACAACCTCCTCAATTCATAGATATGTCGATTCTCGGTGTCATCGCTAAACTGTTCAAGGAAAGACTTGGCGATCGTAAGATCCTTGTGAGAAATTTCAAGTATATGTTCAACAGGGGAGATGATTATCTTGAACCAAAAAAGAGCTACTTCCATGAATTTCTACAAGTTCTGTGGCCCCAAAAACTTCGTCATCTTGTACTTCGAATGTGGGATGATAAAGAAGTTCTTGCAAGTGGATCCTACGACCCAGTGATTCTAAATTGGCCTCGATATTCAGTGGCGTCAAGTTTGGAACAATGGAGAGATGCAAGAACTCTTGATATTTGTGACCCACTTATGTGCAAGTACTGGATAAGTCTTCTTGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGACGAAGATTATGAAACAACTA</pcr_primer_p1>
		<pcr_primer_p2>CGAGAATCGACATATCTATGAAT</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>GGACGAAGATTATGAAACAACTATCACATATGGAAGAAGTGAAGAGGGTTTACATCTGATGGAGTTTGAGAACACATTCTTCCAAGATGGGACTCATTACAAGATTATGGCAGCTGTCGACTTCTTCTTCTTCCTCAGAATCCCTGGACAATTCCTTAATCAGATCTCCATCGAATTCGAGGAGTACCGATCTGAACAACAACCTCCTCAATTCATAGATATGTCGATTCTCG</canonical_amplicon>
		<polymorphic_amplicon>GGACGAAGATTATGAAACAACTATCACATATGGAAGAAGTGAAGAGGGTTTACATCTGATGGAGTTYGAGAACACATTCTTCCAAGATGGGACTCATTACAAGATTATGGCAGCTGTCGACTTCTTCTTCTTCCTCAGAATCCCTGGACAATTCCTTAATCAGATCTCCATCGAATTCGAGGAGTACCGATCTGAACAACAACCTCCTCAATTCATAGATATGTCGATTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8938</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>381350</contig_pos>
        <strand>+</strand>
        <context>GTACACAAGC[G/T]TTTAGGCTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGC</left_flank>
        <right_flank>TTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTTGGCTGGGATTATATAGAAATCCGAATTAATGATGTTCATGGGACCAGAATGAGCATATTCTATGAGGATAATCAAGGAAAAACC</canonical>
            <polymorphic>CTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCKTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTTGGCTGGGATTATATAGAAATCCGAATTAATGATGTTCATGGGACCAGAATGAGCATATTCTATGAGGATAATCAAGGAAAAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>332 291 170 99 52 21 19 16</canonical_bands>
                <polymorphic_bands>343 332 170 99 21 19 16</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>170 154 99 95 93 82 79 55 44 24 21 19 17 16 13 11 8</canonical_bands>
                <polymorphic_bands>170 154 99 95 93 82 79 55 44 24 21 21 19 17 16 11</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTACGCCACTAGTCAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTAGTAATTCTCTTCGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCKTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8939</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>381298</contig_pos>
        <strand>+</strand>
        <context>GGYCYAGMGG[C/T]GGTCYARTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGG</left_flank>
        <right_flank>GGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTGTTTTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTTGGCTGGGATTATATAGAAATCCGAATTAATGA</canonical>
            <polymorphic>GTTTGTTTTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGYGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTTGGCTGGGATTATATAGAAATCCGAATTAATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>222 109 107 88 71 69 57 45 35 34 33 25 22 18 16 13 11 11 9 5</canonical_bands>
                <polymorphic_bands>222 109 107 88 71 69 57 45 36 35 34 33 22 18 16 13 11 9 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTACGCCACTAGTCAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTAGTAATTCTCTTCGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGYGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGYGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8940</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>381295</contig_pos>
        <strand>+</strand>
        <context>GGYGGYCYAG[A/C]GGYGGTCYAR</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAG</left_flank>
        <right_flank>GGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGTTTGTTTTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTTGGCTGGGATTATATAGAAATCCGAATTAA</canonical>
            <polymorphic>GTTGTTTGTTTTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGMGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTTGGCTGGGATTATATAGAAATCCGAATTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTACGCCACTAGTCAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTAGTAATTCTCTTCGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGMGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8941</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>381266</contig_pos>
        <strand>+</strand>
        <context>GCCCARTGGC[A/G]GYCYAGCGGY</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGC</left_flank>
        <right_flank>GTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACTTTCCAACCCGCCATTTTTTGTATGTTGTTTGTTTTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTT</canonical>
            <polymorphic>AAAACTTTCCAACCCGCCATTTTTTGTATGTTGTTTGTTTTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCRGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>472 350 90 44 19 14 11</canonical_bands>
                <polymorphic_bands>472 350 90 55 19 14</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>503 486 11</canonical_bands>
                <polymorphic_bands>514 486</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTATGGGGATTTTGTGATTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAGAGAAGGTGACTCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>CTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCRGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8942</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>381253</contig_pos>
        <strand></strand>
        <context>AAGCCCAGTG[G/A]CGGCCCARTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTG</left_flank>
        <right_flank>CGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCC</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGATCTACCCAAAACTTTCCAACCCGCCATTTTTTGTATGTTGTTTGTTTTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCT</canonical>
            <polymorphic>TTTTGATCTACCCAAAACTTTCCAACCCGCCATTTTTTGTATGTTGTTTGTTTTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGRCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>472 337 90 44 27 19 11</canonical_bands>
                <polymorphic_bands>483 337 90 44 27 19</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>503 335 80 55 27</canonical_bands>
                <polymorphic_bands>558 335 80 27</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>503 335 107 55</canonical_bands>
                <polymorphic_bands>558 335 107</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTATGGGGATTTTGTGATTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAGAGAAGGTGACTCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>CTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGRCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8943</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>446341</contig_pos>
        <strand></strand>
        <context>aaaaatcaac[C/T]ggttgcaacg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGTGAACGCGGGTATGAACTAGATCATGATATGTTTCTTAAAAATCAAC</left_flank>
        <right_flank>GGTTGCAACGCGCGTATTTTCGCTCATCGTTTAAAACTGATCGCTTGAAC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAATTTAGAAGTTGATTACTTATTGATATCGTTTACAGGAACCAAGTTAAGTTGTCTCAAAGATAAAAGTTAGGGGATCCTTTTATTGAAAGTTTCACAATGTTTTGGATACCGAATCACTGTTTCAGCGTGTTCTCATCTTTCGAAAAAGTTCCAAGATTCTGATTTGGTTATAATATACATACATTTTTGTTTTTCTACAGCGTAACTCACTGGGTCGCCAGTTCTTTTTCGAAACTTCCAAAAGTTCCGATATGCAGAATATATTCTTTAGACCAATTTAAAAATGTCCCCCAATATTCCCTATCGTTAACATAATTTAAACATAATGACTCATTTTTTGTTCCTGTCATTAATGCAATAAATGACATATCACTTGGGTTCAAGCGAGGGGGTCAGAAAAAGCGCCCCAGCAAACTCGTAGGCCAGAAGAAATTTAACAATTTCGAAGTGAACGCGGGTATGAACTAGATCATGATATGTTTCTTAAAAATCAACCGGTTGCAACGCGCGTATTTTCGCTCATCGTTTAAAACTGATCGCTTGAACCCAAGTGCATATGTTACAAATATACAAAAAGCGATTTTGTCGGTTTCATCACATTTTCAACATTCGCTAATTTCCATTTTCTATGATTCGATAAATGAACAAACTTCAACCCTTCTTACTGTTACCTCTATTAGAAATTCTCGTTTCTTCGATTTTTCATGATTGGTCTTTATCAAATCGCATCCAGAACCTTCAACCCCTTTTCCCCATTTGTTATGGGATAAAAATTATGGCCTTTTTAATTTTATTCGAACTTTTGCTGTTTCTAATTCTTCATAACATTTTACACCTTATTGGACTACCTGATTTCACATCTCCCCTTCGAGCTTTAATCTCCAAAAAGAAATCATTTTGACTAGAACTATTAACCTTCTTAAAGGTAATCTCATGAAATTCAGATCTTGGCTAGCTGAAGGTATTTTTTCAATCCTTCTTAATTCTATACCTAAT</canonical>
            <polymorphic>ACAATTTAGAAGTTGATTACTTATTGATATCGTTTACAGGAACCAAGTTAAGTTGTCTCAAAGATAAAAGTTAGGGGATCCTTTTATTGAAAGTTTCACAATGTTTTGGATACCGAATCACTGTTTCAGCGTGTTCTCATCTTTCGAAAAAGTTCCAAGATTCTGATTTGGTTATAATATACATACATTTTTGTTTTTCTACAGCGTAACTCACTGGGTCGCCAGTTCTTTTTCGAAACTTCCAAAAGTTCCGATATGCAGAATATATTCTTTAGACCAATTTAAAAATGTCCCCCAATATTCCCTATCGTTAACATAATTTAAACATAATGACTCATTTTTTGTTCCTGTCATTAATGCAATAAATGACATATCACTTGGGTTCAAGCGAGGGGGTCAGAAAAAGCGCCCCAGCAAACTCGTAGGCCAGAAGAAATTTAACAATTTCGAAGTGAACGCGGGTATGAACTAGATCATGATATGTTTCTTAAAAATCAACYGGTTGCAACGCGCGTATTTTCGCTCATCGTTTAAAACTGATCGCTTGAACCCAAGTGCATATGTTACAAATATACAAAAAGCGATTTTGTCGGTTTCATCACATTTTCAACATTCGCTAATTTCCATTTTCTATGATTCGATAAATGAACAAACTTCAACCCTTCTTACTGTTACCTCTATTAGAAATTCTCGTTTCTTCGATTTTTCATGATTGGTCTTTATCAAATCGCATCCAGAACCTTCAACCCCTTTTCCCCATTTGTTATGGGATAAAAATTATGGCCTTTTTAATTTTATTCGAACTTTTGCTGTTTCTAATTCTTCATAACATTTTACACCTTATTGGACTACCTGATTTCACATCTCCCCTTCGAGCTTTAATCTCCAAAAAGAAATCATTTTGACTAGAACTATTAACCTTCTTAAAGGTAATCTCATGAAATTCAGATCTTGGCTAGCTGAAGGTATTTTTTCAATCCTTCTTAATTCTATACCTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACCGGT</site>
                <isoschizomers>
                    <enzyme>AgeI</enzyme>
                    <enzyme>AsiAI</enzyme>
                    <enzyme>BshTI</enzyme>
                    <enzyme>CspAI</enzyme>
                    <enzyme>PinAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATATTCCCTATCGTTAACATAATTT</pcr_primer_p1>
		<pcr_primer_p2>GTAACATATGCACTTGGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>AATATTCCCTATCGTTAACATAATTTAAACATAATGACTCATTTTTTGTTCCTGTCATTAATGCAATAAATGACATATCACTTGGGTTCAAGCGAGGGGGTCAGAAAAAGCGCCCCAGCAAACTCGTAGGCCAGAAGAAATTTAACAATTTCGAAGTGAACGCGGGTATGAACTAGATCATGATATGTTTCTTAAAAATCAACCGGTTGCAACGCGCGTATTTTCGCTCATCGTTTAAAACTGATCGCTTGAACCCAAGTGCATATGTTAC</canonical_amplicon>
		<polymorphic_amplicon>AATATTCCCTATCGTTAACATAATTTAAACATAATGACTCATTTTTTGTTCCTGTCATTAATGCAATAAATGACATATCACTTGGGTTCAAGCGAGGGGGTCAGAAAAAGCGCCCCAGCAAACTCGTAGGCCAGAAGAAATTTAACAATTTCGAAGTGAACGCGGGTATGAACTAGATCATGATATGTTTCTTAAAAATCAACYGGTTGCAACGCGCGTATTTTCGCTCATCGTTTAAAACTGATCGCTTGAACCCAAGTGCATATGTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8944</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>446354</contig_pos>
        <strand></strand>
        <context>ttgcaacgcg[C/T]gtattttcgc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATGAACTAGATCATGATATGTTTCTTAAAAATCAACCGGTTGCAACGCG</left_flank>
        <right_flank>GTATTTTCGCTCATCGTTTAAAACTGATCGCTTGAACCCAAGTGCATATG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATTACTTATTGATATCGTTTACAGGAACCAAGTTAAGTTGTCTCAAAGATAAAAGTTAGGGGATCCTTTTATTGAAAGTTTCACAATGTTTTGGATACCGAATCACTGTTTCAGCGTGTTCTCATCTTTCGAAAAAGTTCCAAGATTCTGATTTGGTTATAATATACATACATTTTTGTTTTTCTACAGCGTAACTCACTGGGTCGCCAGTTCTTTTTCGAAACTTCCAAAAGTTCCGATATGCAGAATATATTCTTTAGACCAATTTAAAAATGTCCCCCAATATTCCCTATCGTTAACATAATTTAAACATAATGACTCATTTTTTGTTCCTGTCATTAATGCAATAAATGACATATCACTTGGGTTCAAGCGAGGGGGTCAGAAAAAGCGCCCCAGCAAACTCGTAGGCCAGAAGAAATTTAACAATTTCGAAGTGAACGCGGGTATGAACTAGATCATGATATGTTTCTTAAAAATCAACCGGTTGCAACGCGCGTATTTTCGCTCATCGTTTAAAACTGATCGCTTGAACCCAAGTGCATATGTTACAAATATACAAAAAGCGATTTTGTCGGTTTCATCACATTTTCAACATTCGCTAATTTCCATTTTCTATGATTCGATAAATGAACAAACTTCAACCCTTCTTACTGTTACCTCTATTAGAAATTCTCGTTTCTTCGATTTTTCATGATTGGTCTTTATCAAATCGCATCCAGAACCTTCAACCCCTTTTCCCCATTTGTTATGGGATAAAAATTATGGCCTTTTTAATTTTATTCGAACTTTTGCTGTTTCTAATTCTTCATAACATTTTACACCTTATTGGACTACCTGATTTCACATCTCCCCTTCGAGCTTTAATCTCCAAAAAGAAATCATTTTGACTAGAACTATTAACCTTCTTAAAGGTAATCTCATGAAATTCAGATCTTGGCTAGCTGAAGGTATTTTTTCAATCCTTCTTAATTCTATACCTAATGTTCCTGTTTCCG</canonical>
            <polymorphic>TGATTACTTATTGATATCGTTTACAGGAACCAAGTTAAGTTGTCTCAAAGATAAAAGTTAGGGGATCCTTTTATTGAAAGTTTCACAATGTTTTGGATACCGAATCACTGTTTCAGCGTGTTCTCATCTTTCGAAAAAGTTCCAAGATTCTGATTTGGTTATAATATACATACATTTTTGTTTTTCTACAGCGTAACTCACTGGGTCGCCAGTTCTTTTTCGAAACTTCCAAAAGTTCCGATATGCAGAATATATTCTTTAGACCAATTTAAAAATGTCCCCCAATATTCCCTATCGTTAACATAATTTAAACATAATGACTCATTTTTTGTTCCTGTCATTAATGCAATAAATGACATATCACTTGGGTTCAAGCGAGGGGGTCAGAAAAAGCGCCCCAGCAAACTCGTAGGCCAGAAGAAATTTAACAATTTCGAAGTGAACGCGGGTATGAACTAGATCATGATATGTTTCTTAAAAATCAACCGGTTGCAACGCGYGTATTTTCGCTCATCGTTTAAAACTGATCGCTTGAACCCAAGTGCATATGTTACAAATATACAAAAAGCGATTTTGTCGGTTTCATCACATTTTCAACATTCGCTAATTTCCATTTTCTATGATTCGATAAATGAACAAACTTCAACCCTTCTTACTGTTACCTCTATTAGAAATTCTCGTTTCTTCGATTTTTCATGATTGGTCTTTATCAAATCGCATCCAGAACCTTCAACCCCTTTTCCCCATTTGTTATGGGATAAAAATTATGGCCTTTTTAATTTTATTCGAACTTTTGCTGTTTCTAATTCTTCATAACATTTTACACCTTATTGGACTACCTGATTTCACATCTCCCCTTCGAGCTTTAATCTCCAAAAAGAAATCATTTTGACTAGAACTATTAACCTTCTTAAAGGTAATCTCATGAAATTCAGATCTTGGCTAGCTGAAGGTATTTTTTCAATCCTTCTTAATTCTATACCTAATGTTCCTGTTTCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 445 52 2</canonical_bands>
                <polymorphic_bands>503 445 52</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 395 104</canonical_bands>
                <polymorphic_bands>605 395</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATATTCCCTATCGTTAACATAATTT</pcr_primer_p1>
		<pcr_primer_p2>GTAACATATGCACTTGGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>AATATTCCCTATCGTTAACATAATTTAAACATAATGACTCATTTTTTGTTCCTGTCATTAATGCAATAAATGACATATCACTTGGGTTCAAGCGAGGGGGTCAGAAAAAGCGCCCCAGCAAACTCGTAGGCCAGAAGAAATTTAACAATTTCGAAGTGAACGCGGGTATGAACTAGATCATGATATGTTTCTTAAAAATCAACCGGTTGCAACGCGCGTATTTTCGCTCATCGTTTAAAACTGATCGCTTGAACCCAAGTGCATATGTTAC</canonical_amplicon>
		<polymorphic_amplicon>AATATTCCCTATCGTTAACATAATTTAAACATAATGACTCATTTTTTGTTCCTGTCATTAATGCAATAAATGACATATCACTTGGGTTCAAGCGAGGGGGTCAGAAAAAGCGCCCCAGCAAACTCGTAGGCCAGAAGAAATTTAACAATTTCGAAGTGAACGCGGGTATGAACTAGATCATGATATGTTTCTTAAAAATCAACCGGTTGCAACGCGYGTATTTTCGCTCATCGTTTAAAACTGATCGCTTGAACCCAAGTGCATATGTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8945</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>446534</contig_pos>
        <strand></strand>
        <context>AGAAATTCTC[G/A]TTTCTTCGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAATGAACAAACTTCAACCCTTCTTACTGTTACCTCTATTAGAAATTCTC</left_flank>
        <right_flank>TTTCTTCGATTTTTCATGATTGGTCTTTATCAAATCGCATCCAGAACCTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCTACAGCGTAACTCACTGGGTCGCCAGTTCTTTTTCGAAACTTCCAAAAGTTCCGATATGCAGAATATATTCTTTAGACCAATTTAAAAATGTCCCCCAATATTCCCTATCGTTAACATAATTTAAACATAATGACTCATTTTTTGTTCCTGTCATTAATGCAATAAATGACATATCACTTGGGTTCAAGCGAGGGGGTCAGAAAAAGCGCCCCAGCAAACTCGTAGGCCAGAAGAAATTTAACAATTTCGAAGTGAACGCGGGTATGAACTAGATCATGATATGTTTCTTAAAAATCAACCGGTTGCAACGCGCGTATTTTCGCTCATCGTTTAAAACTGATCGCTTGAACCCAAGTGCATATGTTACAAATATACAAAAAGCGATTTTGTCGGTTTCATCACATTTTCAACATTCGCTAATTTCCATTTTCTATGATTCGATAAATGAACAAACTTCAACCCTTCTTACTGTTACCTCTATTAGAAATTCTCGTTTCTTCGATTTTTCATGATTGGTCTTTATCAAATCGCATCCAGAACCTTCAACCCCTTTTCCCCATTTGTTATGGGATAAAAATTATGGCCTTTTTAATTTTATTCGAACTTTTGCTGTTTCTAATTCTTCATAACATTTTACACCTTATTGGACTACCTGATTTCACATCTCCCCTTCGAGCTTTAATCTCCAAAAAGAAATCATTTTGACTAGAACTATTAACCTTCTTAAAGGTAATCTCATGAAATTCAGATCTTGGCTAGCTGAAGGTATTTTTTCAATCCTTCTTAATTCTATACCTAATGTTCCTGTTTCCGATTTCTCATATTTCTCATATTTTCTTCAATTCACCGTACGTATAAAATTTTGAAATCAAAAGAAACACCATTATAACTGACAATATTAACCTTCCTACAGGTAAATTCAATTTTGTTTTAAGTTTTAATTTGAACTCGAATCGATTATAATTTAATGTGAAATTTCAGTAAACACTTTCT</canonical>
            <polymorphic>TTTTTCTACAGCGTAACTCACTGGGTCGCCAGTTCTTTTTCGAAACTTCCAAAAGTTCCGATATGCAGAATATATTCTTTAGACCAATTTAAAAATGTCCCCCAATATTCCCTATCGTTAACATAATTTAAACATAATGACTCATTTTTTGTTCCTGTCATTAATGCAATAAATGACATATCACTTGGGTTCAAGCGAGGGGGTCAGAAAAAGCGCCCCAGCAAACTCGTAGGCCAGAAGAAATTTAACAATTTCGAAGTGAACGCGGGTATGAACTAGATCATGATATGTTTCTTAAAAATCAACCGGTTGCAACGCGCGTATTTTCGCTCATCGTTTAAAACTGATCGCTTGAACCCAAGTGCATATGTTACAAATATACAAAAAGCGATTTTGTCGGTTTCATCACATTTTCAACATTCGCTAATTTCCATTTTCTATGATTCGATAAATGAACAAACTTCAACCCTTCTTACTGTTACCTCTATTAGAAATTCTCRTTTCTTCGATTTTTCATGATTGGTCTTTATCAAATCGCATCCAGAACCTTCAACCCCTTTTCCCCATTTGTTATGGGATAAAAATTATGGCCTTTTTAATTTTATTCGAACTTTTGCTGTTTCTAATTCTTCATAACATTTTACACCTTATTGGACTACCTGATTTCACATCTCCCCTTCGAGCTTTAATCTCCAAAAAGAAATCATTTTGACTAGAACTATTAACCTTCTTAAAGGTAATCTCATGAAATTCAGATCTTGGCTAGCTGAAGGTATTTTTTCAATCCTTCTTAATTCTATACCTAATGTTCCTGTTTCCGATTTCTCATATTTCTCATATTTTCTTCAATTCACCGTACGTATAAAATTTTGAAATCAAAAGAAACACCATTATAACTGACAATATTAACCTTCCTACAGGTAAATTCAATTTTGTTTTAAGTTTTAATTTGAACTCGAATCGATTATAATTTAATGTGAAATTTCAGTAAACACTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCGCTAATTTCCATTTTCTAT</pcr_primer_p1>
		<pcr_primer_p2>GAAATCAGGTAGTCCAATAAGGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTCGCTAATTTCCATTTTCTATGATTCGATAAATGAACAAACTTCAACCCTTCTTACTGTTACCTCTATTAGAAATTCTCGTTTCTTCGATTTTTCATGATTGGTCTTTATCAAATCGCATCCAGAACCTTCAACCCCTTTTCCCCATTTGTTATGGGATAAAAATTATGGCCTTTTTAATTTTATTCGAACTTTTGCTGTTTCTAATTCTTCATAACATTTTACACCTTATTGGACTACCTGATTTC</canonical_amplicon>
		<polymorphic_amplicon>ATTCGCTAATTTCCATTTTCTATGATTCGATAAATGAACAAACTTCAACCCTTCTTACTGTTACCTCTATTAGAAATTCTCRTTTCTTCGATTTTTCATGATTGGTCTTTATCAAATCGCATCCAGAACCTTCAACCCCTTTTCCCCATTTGTTATGGGATAAAAATTATGGCCTTTTTAATTTTATTCGAACTTTTGCTGTTTCTAATTCTTCATAACATTTTACACCTTATTGGACTACCTGATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8946</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>446567</contig_pos>
        <strand></strand>
        <context>GTCTTTATCA[A/C]ATCGCATCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTCTATTAGAAATTCTCGTTTCTTCGATTTTTCATGATTGGTCTTTATCA</left_flank>
        <right_flank>ATCGCATCCAGAACCTTCAACCCCTTTTCCCCATTTGTTATGGGATAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTTTTCGAAACTTCCAAAAGTTCCGATATGCAGAATATATTCTTTAGACCAATTTAAAAATGTCCCCCAATATTCCCTATCGTTAACATAATTTAAACATAATGACTCATTTTTTGTTCCTGTCATTAATGCAATAAATGACATATCACTTGGGTTCAAGCGAGGGGGTCAGAAAAAGCGCCCCAGCAAACTCGTAGGCCAGAAGAAATTTAACAATTTCGAAGTGAACGCGGGTATGAACTAGATCATGATATGTTTCTTAAAAATCAACCGGTTGCAACGCGCGTATTTTCGCTCATCGTTTAAAACTGATCGCTTGAACCCAAGTGCATATGTTACAAATATACAAAAAGCGATTTTGTCGGTTTCATCACATTTTCAACATTCGCTAATTTCCATTTTCTATGATTCGATAAATGAACAAACTTCAACCCTTCTTACTGTTACCTCTATTAGAAATTCTCGTTTCTTCGATTTTTCATGATTGGTCTTTATCAAATCGCATCCAGAACCTTCAACCCCTTTTCCCCATTTGTTATGGGATAAAAATTATGGCCTTTTTAATTTTATTCGAACTTTTGCTGTTTCTAATTCTTCATAACATTTTACACCTTATTGGACTACCTGATTTCACATCTCCCCTTCGAGCTTTAATCTCCAAAAAGAAATCATTTTGACTAGAACTATTAACCTTCTTAAAGGTAATCTCATGAAATTCAGATCTTGGCTAGCTGAAGGTATTTTTTCAATCCTTCTTAATTCTATACCTAATGTTCCTGTTTCCGATTTCTCATATTTCTCATATTTTCTTCAATTCACCGTACGTATAAAATTTTGAAATCAAAAGAAACACCATTATAACTGACAATATTAACCTTCCTACAGGTAAATTCAATTTTGTTTTAAGTTTTAATTTGAACTCGAATCGATTATAATTTAATGTGAAATTTCAGTAAACACTTTCTCGATTTCATCCCATTTTCAAAACTCGTCGACTT</canonical>
            <polymorphic>TCTTTTTCGAAACTTCCAAAAGTTCCGATATGCAGAATATATTCTTTAGACCAATTTAAAAATGTCCCCCAATATTCCCTATCGTTAACATAATTTAAACATAATGACTCATTTTTTGTTCCTGTCATTAATGCAATAAATGACATATCACTTGGGTTCAAGCGAGGGGGTCAGAAAAAGCGCCCCAGCAAACTCGTAGGCCAGAAGAAATTTAACAATTTCGAAGTGAACGCGGGTATGAACTAGATCATGATATGTTTCTTAAAAATCAACCGGTTGCAACGCGCGTATTTTCGCTCATCGTTTAAAACTGATCGCTTGAACCCAAGTGCATATGTTACAAATATACAAAAAGCGATTTTGTCGGTTTCATCACATTTTCAACATTCGCTAATTTCCATTTTCTATGATTCGATAAATGAACAAACTTCAACCCTTCTTACTGTTACCTCTATTAGAAATTCTCGTTTCTTCGATTTTTCATGATTGGTCTTTATCAMATCGCATCCAGAACCTTCAACCCCTTTTCCCCATTTGTTATGGGATAAAAATTATGGCCTTTTTAATTTTATTCGAACTTTTGCTGTTTCTAATTCTTCATAACATTTTACACCTTATTGGACTACCTGATTTCACATCTCCCCTTCGAGCTTTAATCTCCAAAAAGAAATCATTTTGACTAGAACTATTAACCTTCTTAAAGGTAATCTCATGAAATTCAGATCTTGGCTAGCTGAAGGTATTTTTTCAATCCTTCTTAATTCTATACCTAATGTTCCTGTTTCCGATTTCTCATATTTCTCATATTTTCTTCAATTCACCGTACGTATAAAATTTTGAAATCAAAAGAAACACCATTATAACTGACAATATTAACCTTCCTACAGGTAAATTCAATTTTGTTTTAAGTTTTAATTTGAACTCGAATCGATTATAATTTAATGTGAAATTTCAGTAAACACTTTCTCGATTTCATCCCATTTTCAAAACTCGTCGACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCGCTAATTTCCATTTTCTAT</pcr_primer_p1>
		<pcr_primer_p2>GAAATCAGGTAGTCCAATAAGGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTCGCTAATTTCCATTTTCTATGATTCGATAAATGAACAAACTTCAACCCTTCTTACTGTTACCTCTATTAGAAATTCTCGTTTCTTCGATTTTTCATGATTGGTCTTTATCAAATCGCATCCAGAACCTTCAACCCCTTTTCCCCATTTGTTATGGGATAAAAATTATGGCCTTTTTAATTTTATTCGAACTTTTGCTGTTTCTAATTCTTCATAACATTTTACACCTTATTGGACTACCTGATTTC</canonical_amplicon>
		<polymorphic_amplicon>ATTCGCTAATTTCCATTTTCTATGATTCGATAAATGAACAAACTTCAACCCTTCTTACTGTTACCTCTATTAGAAATTCTCGTTTCTTCGATTTTTCATGATTGGTCTTTATCAMATCGCATCCAGAACCTTCAACCCCTTTTCCCCATTTGTTATGGGATAAAAATTATGGCCTTTTTAATTTTATTCGAACTTTTGCTGTTTCTAATTCTTCATAACATTTTACACCTTATTGGACTACCTGATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8947</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>446592</contig_pos>
        <strand></strand>
        <context>CTTCAACCCC[T/A]TTTCCCCATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GATTTTTCATGATTGGTCTTTATCAAATCGCATCCAGAACCTTCAACCCC</left_flank>
        <right_flank>TTTCCCCATTTGTTATGGGATAAAAATTATGGCCTTTTTAATTTTATTCG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATATGCAGAATATATTCTTTAGACCAATTTAAAAATGTCCCCCAATATTCCCTATCGTTAACATAATTTAAACATAATGACTCATTTTTTGTTCCTGTCATTAATGCAATAAATGACATATCACTTGGGTTCAAGCGAGGGGGTCAGAAAAAGCGCCCCAGCAAACTCGTAGGCCAGAAGAAATTTAACAATTTCGAAGTGAACGCGGGTATGAACTAGATCATGATATGTTTCTTAAAAATCAACCGGTTGCAACGCGCGTATTTTCGCTCATCGTTTAAAACTGATCGCTTGAACCCAAGTGCATATGTTACAAATATACAAAAAGCGATTTTGTCGGTTTCATCACATTTTCAACATTCGCTAATTTCCATTTTCTATGATTCGATAAATGAACAAACTTCAACCCTTCTTACTGTTACCTCTATTAGAAATTCTCGTTTCTTCGATTTTTCATGATTGGTCTTTATCAAATCGCATCCAGAACCTTCAACCCCTTTTCCCCATTTGTTATGGGATAAAAATTATGGCCTTTTTAATTTTATTCGAACTTTTGCTGTTTCTAATTCTTCATAACATTTTACACCTTATTGGACTACCTGATTTCACATCTCCCCTTCGAGCTTTAATCTCCAAAAAGAAATCATTTTGACTAGAACTATTAACCTTCTTAAAGGTAATCTCATGAAATTCAGATCTTGGCTAGCTGAAGGTATTTTTTCAATCCTTCTTAATTCTATACCTAATGTTCCTGTTTCCGATTTCTCATATTTCTCATATTTTCTTCAATTCACCGTACGTATAAAATTTTGAAATCAAAAGAAACACCATTATAACTGACAATATTAACCTTCCTACAGGTAAATTCAATTTTGTTTTAAGTTTTAATTTGAACTCGAATCGATTATAATTTAATGTGAAATTTCAGTAAACACTTTCTCGATTTCATCCCATTTTCAAAACTCGTCGACTTCCATTTTTTATGATGGGATGAACTA</canonical>
            <polymorphic>CGATATGCAGAATATATTCTTTAGACCAATTTAAAAATGTCCCCCAATATTCCCTATCGTTAACATAATTTAAACATAATGACTCATTTTTTGTTCCTGTCATTAATGCAATAAATGACATATCACTTGGGTTCAAGCGAGGGGGTCAGAAAAAGCGCCCCAGCAAACTCGTAGGCCAGAAGAAATTTAACAATTTCGAAGTGAACGCGGGTATGAACTAGATCATGATATGTTTCTTAAAAATCAACCGGTTGCAACGCGCGTATTTTCGCTCATCGTTTAAAACTGATCGCTTGAACCCAAGTGCATATGTTACAAATATACAAAAAGCGATTTTGTCGGTTTCATCACATTTTCAACATTCGCTAATTTCCATTTTCTATGATTCGATAAATGAACAAACTTCAACCCTTCTTACTGTTACCTCTATTAGAAATTCTCGTTTCTTCGATTTTTCATGATTGGTCTTTATCAAATCGCATCCAGAACCTTCAACCCCWTTTCCCCATTTGTTATGGGATAAAAATTATGGCCTTTTTAATTTTATTCGAACTTTTGCTGTTTCTAATTCTTCATAACATTTTACACCTTATTGGACTACCTGATTTCACATCTCCCCTTCGAGCTTTAATCTCCAAAAAGAAATCATTTTGACTAGAACTATTAACCTTCTTAAAGGTAATCTCATGAAATTCAGATCTTGGCTAGCTGAAGGTATTTTTTCAATCCTTCTTAATTCTATACCTAATGTTCCTGTTTCCGATTTCTCATATTTCTCATATTTTCTTCAATTCACCGTACGTATAAAATTTTGAAATCAAAAGAAACACCATTATAACTGACAATATTAACCTTCCTACAGGTAAATTCAATTTTGTTTTAAGTTTTAATTTGAACTCGAATCGATTATAATTTAATGTGAAATTTCAGTAAACACTTTCTCGATTTCATCCCATTTTCAAAACTCGTCGACTTCCATTTTTTATGATGGGATGAACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCGCTAATTTCCATTTTCTAT</pcr_primer_p1>
		<pcr_primer_p2>GAAATCAGGTAGTCCAATAAGGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTCGCTAATTTCCATTTTCTATGATTCGATAAATGAACAAACTTCAACCCTTCTTACTGTTACCTCTATTAGAAATTCTCGTTTCTTCGATTTTTCATGATTGGTCTTTATCAAATCGCATCCAGAACCTTCAACCCCTTTTCCCCATTTGTTATGGGATAAAAATTATGGCCTTTTTAATTTTATTCGAACTTTTGCTGTTTCTAATTCTTCATAACATTTTACACCTTATTGGACTACCTGATTTC</canonical_amplicon>
		<polymorphic_amplicon>ATTCGCTAATTTCCATTTTCTATGATTCGATAAATGAACAAACTTCAACCCTTCTTACTGTTACCTCTATTAGAAATTCTCGTTTCTTCGATTTTTCATGATTGGTCTTTATCAAATCGCATCCAGAACCTTCAACCCCWTTTCCCCATTTGTTATGGGATAAAAATTATGGCCTTTTTAATTTTATTCGAACTTTTGCTGTTTCTAATTCTTCATAACATTTTACACCTTATTGGACTACCTGATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8948</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>446631</contig_pos>
        <strand></strand>
        <context>ATGGCCTTTT[T/C]AATTTTATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCTTCAACCCCTTTTCCCCATTTGTTATGGGATAAAAATTATGGCCTTTT</left_flank>
        <right_flank>AATTTTATTCGAACTTTTGCTGTTTCTAATTCTTCATAACATTTTACACC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCCCCAATATTCCCTATCGTTAACATAATTTAAACATAATGACTCATTTTTTGTTCCTGTCATTAATGCAATAAATGACATATCACTTGGGTTCAAGCGAGGGGGTCAGAAAAAGCGCCCCAGCAAACTCGTAGGCCAGAAGAAATTTAACAATTTCGAAGTGAACGCGGGTATGAACTAGATCATGATATGTTTCTTAAAAATCAACCGGTTGCAACGCGCGTATTTTCGCTCATCGTTTAAAACTGATCGCTTGAACCCAAGTGCATATGTTACAAATATACAAAAAGCGATTTTGTCGGTTTCATCACATTTTCAACATTCGCTAATTTCCATTTTCTATGATTCGATAAATGAACAAACTTCAACCCTTCTTACTGTTACCTCTATTAGAAATTCTCGTTTCTTCGATTTTTCATGATTGGTCTTTATCAAATCGCATCCAGAACCTTCAACCCCTTTTCCCCATTTGTTATGGGATAAAAATTATGGCCTTTTTAATTTTATTCGAACTTTTGCTGTTTCTAATTCTTCATAACATTTTACACCTTATTGGACTACCTGATTTCACATCTCCCCTTCGAGCTTTAATCTCCAAAAAGAAATCATTTTGACTAGAACTATTAACCTTCTTAAAGGTAATCTCATGAAATTCAGATCTTGGCTAGCTGAAGGTATTTTTTCAATCCTTCTTAATTCTATACCTAATGTTCCTGTTTCCGATTTCTCATATTTCTCATATTTTCTTCAATTCACCGTACGTATAAAATTTTGAAATCAAAAGAAACACCATTATAACTGACAATATTAACCTTCCTACAGGTAAATTCAATTTTGTTTTAAGTTTTAATTTGAACTCGAATCGATTATAATTTAATGTGAAATTTCAGTAAACACTTTCTCGATTTCATCCCATTTTCAAAACTCGTCGACTTCCATTTTTTATGATGGGATGAACTAAAATTTACCCTTCTTTCTATTACTTCTATTTGAAATAAT</canonical>
            <polymorphic>TCCCCCAATATTCCCTATCGTTAACATAATTTAAACATAATGACTCATTTTTTGTTCCTGTCATTAATGCAATAAATGACATATCACTTGGGTTCAAGCGAGGGGGTCAGAAAAAGCGCCCCAGCAAACTCGTAGGCCAGAAGAAATTTAACAATTTCGAAGTGAACGCGGGTATGAACTAGATCATGATATGTTTCTTAAAAATCAACCGGTTGCAACGCGCGTATTTTCGCTCATCGTTTAAAACTGATCGCTTGAACCCAAGTGCATATGTTACAAATATACAAAAAGCGATTTTGTCGGTTTCATCACATTTTCAACATTCGCTAATTTCCATTTTCTATGATTCGATAAATGAACAAACTTCAACCCTTCTTACTGTTACCTCTATTAGAAATTCTCGTTTCTTCGATTTTTCATGATTGGTCTTTATCAAATCGCATCCAGAACCTTCAACCCCTTTTCCCCATTTGTTATGGGATAAAAATTATGGCCTTTTYAATTTTATTCGAACTTTTGCTGTTTCTAATTCTTCATAACATTTTACACCTTATTGGACTACCTGATTTCACATCTCCCCTTCGAGCTTTAATCTCCAAAAAGAAATCATTTTGACTAGAACTATTAACCTTCTTAAAGGTAATCTCATGAAATTCAGATCTTGGCTAGCTGAAGGTATTTTTTCAATCCTTCTTAATTCTATACCTAATGTTCCTGTTTCCGATTTCTCATATTTCTCATATTTTCTTCAATTCACCGTACGTATAAAATTTTGAAATCAAAAGAAACACCATTATAACTGACAATATTAACCTTCCTACAGGTAAATTCAATTTTGTTTTAAGTTTTAATTTGAACTCGAATCGATTATAATTTAATGTGAAATTTCAGTAAACACTTTCTCGATTTCATCCCATTTTCAAAACTCGTCGACTTCCATTTTTTATGATGGGATGAACTAAAATTTACCCTTCTTTCTATTACTTCTATTTGAAATAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>258 125 115 90 84 60 50 43 36 33 32 27 21 10 9 7</canonical_bands>
                <polymorphic_bands>348 125 115 84 60 50 43 36 33 32 27 21 10 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCGCTAATTTCCATTTTCTAT</pcr_primer_p1>
		<pcr_primer_p2>GAAATCAGGTAGTCCAATAAGGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTCGCTAATTTCCATTTTCTATGATTCGATAAATGAACAAACTTCAACCCTTCTTACTGTTACCTCTATTAGAAATTCTCGTTTCTTCGATTTTTCATGATTGGTCTTTATCAAATCGCATCCAGAACCTTCAACCCCTTTTCCCCATTTGTTATGGGATAAAAATTATGGCCTTTTTAATTTTATTCGAACTTTTGCTGTTTCTAATTCTTCATAACATTTTACACCTTATTGGACTACCTGATTTC</canonical_amplicon>
		<polymorphic_amplicon>ATTCGCTAATTTCCATTTTCTATGATTCGATAAATGAACAAACTTCAACCCTTCTTACTGTTACCTCTATTAGAAATTCTCGTTTCTTCGATTTTTCATGATTGGTCTTTATCAAATCGCATCCAGAACCTTCAACCCCTTTTCCCCATTTGTTATGGGATAAAAATTATGGCCTTTTYAATTTTATTCGAACTTTTGCTGTTTCTAATTCTTCATAACATTTTACACCTTATTGGACTACCTGATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8949</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>446704</contig_pos>
        <strand></strand>
        <context>CTGATTTCAC[A/G]TCTCCCCTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCTAATTCTTCATAACATTTTACACCTTATTGGACTACCTGATTTCAC</left_flank>
        <right_flank>TCTCCCCTTCGAGCTTTAATCTCCAAAAAGAAATCATTTTGACTAGAACT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGACATATCACTTGGGTTCAAGCGAGGGGGTCAGAAAAAGCGCCCCAGCAAACTCGTAGGCCAGAAGAAATTTAACAATTTCGAAGTGAACGCGGGTATGAACTAGATCATGATATGTTTCTTAAAAATCAACCGGTTGCAACGCGCGTATTTTCGCTCATCGTTTAAAACTGATCGCTTGAACCCAAGTGCATATGTTACAAATATACAAAAAGCGATTTTGTCGGTTTCATCACATTTTCAACATTCGCTAATTTCCATTTTCTATGATTCGATAAATGAACAAACTTCAACCCTTCTTACTGTTACCTCTATTAGAAATTCTCGTTTCTTCGATTTTTCATGATTGGTCTTTATCAAATCGCATCCAGAACCTTCAACCCCTTTTCCCCATTTGTTATGGGATAAAAATTATGGCCTTTTTAATTTTATTCGAACTTTTGCTGTTTCTAATTCTTCATAACATTTTACACCTTATTGGACTACCTGATTTCACATCTCCCCTTCGAGCTTTAATCTCCAAAAAGAAATCATTTTGACTAGAACTATTAACCTTCTTAAAGGTAATCTCATGAAATTCAGATCTTGGCTAGCTGAAGGTATTTTTTCAATCCTTCTTAATTCTATACCTAATGTTCCTGTTTCCGATTTCTCATATTTCTCATATTTTCTTCAATTCACCGTACGTATAAAATTTTGAAATCAAAAGAAACACCATTATAACTGACAATATTAACCTTCCTACAGGTAAATTCAATTTTGTTTTAAGTTTTAATTTGAACTCGAATCGATTATAATTTAATGTGAAATTTCAGTAAACACTTTCTCGATTTCATCCCATTTTCAAAACTCGTCGACTTCCATTTTTTATGATGGGATGAACTAAAATTTACCCTTCTTTCTATTACTTCTATTTGAAATAATCCTTAATTCGATTTTTCATGATTGGTCTTTATCACATCAAACCCAGAATCTTCATTCCCATTTCCCCATTTTA</canonical>
            <polymorphic>AAATGACATATCACTTGGGTTCAAGCGAGGGGGTCAGAAAAAGCGCCCCAGCAAACTCGTAGGCCAGAAGAAATTTAACAATTTCGAAGTGAACGCGGGTATGAACTAGATCATGATATGTTTCTTAAAAATCAACCGGTTGCAACGCGCGTATTTTCGCTCATCGTTTAAAACTGATCGCTTGAACCCAAGTGCATATGTTACAAATATACAAAAAGCGATTTTGTCGGTTTCATCACATTTTCAACATTCGCTAATTTCCATTTTCTATGATTCGATAAATGAACAAACTTCAACCCTTCTTACTGTTACCTCTATTAGAAATTCTCGTTTCTTCGATTTTTCATGATTGGTCTTTATCAAATCGCATCCAGAACCTTCAACCCCTTTTCCCCATTTGTTATGGGATAAAAATTATGGCCTTTTTAATTTTATTCGAACTTTTGCTGTTTCTAATTCTTCATAACATTTTACACCTTATTGGACTACCTGATTTCACRTCTCCCCTTCGAGCTTTAATCTCCAAAAAGAAATCATTTTGACTAGAACTATTAACCTTCTTAAAGGTAATCTCATGAAATTCAGATCTTGGCTAGCTGAAGGTATTTTTTCAATCCTTCTTAATTCTATACCTAATGTTCCTGTTTCCGATTTCTCATATTTCTCATATTTTCTTCAATTCACCGTACGTATAAAATTTTGAAATCAAAAGAAACACCATTATAACTGACAATATTAACCTTCCTACAGGTAAATTCAATTTTGTTTTAAGTTTTAATTTGAACTCGAATCGATTATAATTTAATGTGAAATTTCAGTAAACACTTTCTCGATTTCATCCCATTTTCAAAACTCGTCGACTTCCATTTTTTATGATGGGATGAACTAAAATTTACCCTTCTTTCTATTACTTCTATTTGAAATAATCCTTAATTCGATTTTTCATGATTGGTCTTTATCACATCAAACCCAGAATCTTCATTCCCATTTCCCCATTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGAACTTTTGCTGTTTCTAA</pcr_primer_p1>
		<pcr_primer_p2>GGTGAATTGAAGAAAATATGAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCGAACTTTTGCTGTTTCTAATTCTTCATAACATTTTACACCTTATTGGACTACCTGATTTCACATCTCCCCTTCGAGCTTTAATCTCCAAAAAGAAATCATTTTGACTAGAACTATTAACCTTCTTAAAGGTAATCTCATGAAATTCAGATCTTGGCTAGCTGAAGGTATTTTTTCAATCCTTCTTAATTCTATACCTAATGTTCCTGTTTCCGATTTCTCATATTTCTCATATTTTCTTCAATTCACC</canonical_amplicon>
		<polymorphic_amplicon>TCGAACTTTTGCTGTTTCTAATTCTTCATAACATTTTACACCTTATTGGACTACCTGATTTCACRTCTCCCCTTCGAGCTTTAATCTCCAAAAAGAAATCATTTTGACTAGAACTATTAACCTTCTTAAAGGTAATCTCATGAAATTCAGATCTTGGCTAGCTGAAGGTATTTTTTCAATCCTTCTTAATTCTATACCTAATGTTCCTGTTTCCGATTTCTCATATTTCTCATATTTTCTTCAATTCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8950</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>446717</contig_pos>
        <strand></strand>
        <context>TCCCCTTCGA[G/A]CTTTAATCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATAACATTTTACACCTTATTGGACTACCTGATTTCACATCTCCCCTTCGA</left_flank>
        <right_flank>CTTTAATCTCCAAAAAGAAATCATTTTGACTAGAACTATTAACCTTCTTA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTGGGTTCAAGCGAGGGGGTCAGAAAAAGCGCCCCAGCAAACTCGTAGGCCAGAAGAAATTTAACAATTTCGAAGTGAACGCGGGTATGAACTAGATCATGATATGTTTCTTAAAAATCAACCGGTTGCAACGCGCGTATTTTCGCTCATCGTTTAAAACTGATCGCTTGAACCCAAGTGCATATGTTACAAATATACAAAAAGCGATTTTGTCGGTTTCATCACATTTTCAACATTCGCTAATTTCCATTTTCTATGATTCGATAAATGAACAAACTTCAACCCTTCTTACTGTTACCTCTATTAGAAATTCTCGTTTCTTCGATTTTTCATGATTGGTCTTTATCAAATCGCATCCAGAACCTTCAACCCCTTTTCCCCATTTGTTATGGGATAAAAATTATGGCCTTTTTAATTTTATTCGAACTTTTGCTGTTTCTAATTCTTCATAACATTTTACACCTTATTGGACTACCTGATTTCACATCTCCCCTTCGAGCTTTAATCTCCAAAAAGAAATCATTTTGACTAGAACTATTAACCTTCTTAAAGGTAATCTCATGAAATTCAGATCTTGGCTAGCTGAAGGTATTTTTTCAATCCTTCTTAATTCTATACCTAATGTTCCTGTTTCCGATTTCTCATATTTCTCATATTTTCTTCAATTCACCGTACGTATAAAATTTTGAAATCAAAAGAAACACCATTATAACTGACAATATTAACCTTCCTACAGGTAAATTCAATTTTGTTTTAAGTTTTAATTTGAACTCGAATCGATTATAATTTAATGTGAAATTTCAGTAAACACTTTCTCGATTTCATCCCATTTTCAAAACTCGTCGACTTCCATTTTTTATGATGGGATGAACTAAAATTTACCCTTCTTTCTATTACTTCTATTTGAAATAATCCTTAATTCGATTTTTCATGATTGGTCTTTATCACATCAAACCCAGAATCTTCATTCCCATTTCCCCATTTTATGGGAGCTCATAA</canonical>
            <polymorphic>CTTGGGTTCAAGCGAGGGGGTCAGAAAAAGCGCCCCAGCAAACTCGTAGGCCAGAAGAAATTTAACAATTTCGAAGTGAACGCGGGTATGAACTAGATCATGATATGTTTCTTAAAAATCAACCGGTTGCAACGCGCGTATTTTCGCTCATCGTTTAAAACTGATCGCTTGAACCCAAGTGCATATGTTACAAATATACAAAAAGCGATTTTGTCGGTTTCATCACATTTTCAACATTCGCTAATTTCCATTTTCTATGATTCGATAAATGAACAAACTTCAACCCTTCTTACTGTTACCTCTATTAGAAATTCTCGTTTCTTCGATTTTTCATGATTGGTCTTTATCAAATCGCATCCAGAACCTTCAACCCCTTTTCCCCATTTGTTATGGGATAAAAATTATGGCCTTTTTAATTTTATTCGAACTTTTGCTGTTTCTAATTCTTCATAACATTTTACACCTTATTGGACTACCTGATTTCACATCTCCCCTTCGARCTTTAATCTCCAAAAAGAAATCATTTTGACTAGAACTATTAACCTTCTTAAAGGTAATCTCATGAAATTCAGATCTTGGCTAGCTGAAGGTATTTTTTCAATCCTTCTTAATTCTATACCTAATGTTCCTGTTTCCGATTTCTCATATTTCTCATATTTTCTTCAATTCACCGTACGTATAAAATTTTGAAATCAAAAGAAACACCATTATAACTGACAATATTAACCTTCCTACAGGTAAATTCAATTTTGTTTTAAGTTTTAATTTGAACTCGAATCGATTATAATTTAATGTGAAATTTCAGTAAACACTTTCTCGATTTCATCCCATTTTCAAAACTCGTCGACTTCCATTTTTTATGATGGGATGAACTAAAATTTACCCTTCTTTCTATTACTTCTATTTGAAATAATCCTTAATTCGATTTTTCATGATTGGTCTTTATCACATCAAACCCAGAATCTTCATTCCCATTTCCCCATTTTATGGGAGCTCATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>500 410 83 7</canonical_bands>
                <polymorphic_bands>583 410 7</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>410 357 93 79 50 7 4</canonical_bands>
                <polymorphic_bands>410 357 172 50 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGAACTTTTGCTGTTTCTAA</pcr_primer_p1>
		<pcr_primer_p2>GGTGAATTGAAGAAAATATGAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCGAACTTTTGCTGTTTCTAATTCTTCATAACATTTTACACCTTATTGGACTACCTGATTTCACATCTCCCCTTCGAGCTTTAATCTCCAAAAAGAAATCATTTTGACTAGAACTATTAACCTTCTTAAAGGTAATCTCATGAAATTCAGATCTTGGCTAGCTGAAGGTATTTTTTCAATCCTTCTTAATTCTATACCTAATGTTCCTGTTTCCGATTTCTCATATTTCTCATATTTTCTTCAATTCACC</canonical_amplicon>
		<polymorphic_amplicon>TCGAACTTTTGCTGTTTCTAATTCTTCATAACATTTTACACCTTATTGGACTACCTGATTTCACATCTCCCCTTCGARCTTTAATCTCCAAAAAGAAATCATTTTGACTAGAACTATTAACCTTCTTAAAGGTAATCTCATGAAATTCAGATCTTGGCTAGCTGAAGGTATTTTTTCAATCCTTCTTAATTCTATACCTAATGTTCCTGTTTCCGATTTCTCATATTTCTCATATTTTCTTCAATTCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8952</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>446805</contig_pos>
        <strand></strand>
        <context>GGCTAGCTGA[A/T]GGTATTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTAACCTTCTTAAAGGTAATCTCATGAAATTCAGATCTTGGCTAGCTGA</left_flank>
        <right_flank>GGTATTTTTTCAATCCTTCTTAATTCTATACCTAATGTTCCTGTTTCCGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAACTAGATCATGATATGTTTCTTAAAAATCAACCGGTTGCAACGCGCGTATTTTCGCTCATCGTTTAAAACTGATCGCTTGAACCCAAGTGCATATGTTACAAATATACAAAAAGCGATTTTGTCGGTTTCATCACATTTTCAACATTCGCTAATTTCCATTTTCTATGATTCGATAAATGAACAAACTTCAACCCTTCTTACTGTTACCTCTATTAGAAATTCTCGTTTCTTCGATTTTTCATGATTGGTCTTTATCAAATCGCATCCAGAACCTTCAACCCCTTTTCCCCATTTGTTATGGGATAAAAATTATGGCCTTTTTAATTTTATTCGAACTTTTGCTGTTTCTAATTCTTCATAACATTTTACACCTTATTGGACTACCTGATTTCACATCTCCCCTTCGAGCTTTAATCTCCAAAAAGAAATCATTTTGACTAGAACTATTAACCTTCTTAAAGGTAATCTCATGAAATTCAGATCTTGGCTAGCTGAAGGTATTTTTTCAATCCTTCTTAATTCTATACCTAATGTTCCTGTTTCCGATTTCTCATATTTCTCATATTTTCTTCAATTCACCGTACGTATAAAATTTTGAAATCAAAAGAAACACCATTATAACTGACAATATTAACCTTCCTACAGGTAAATTCAATTTTGTTTTAAGTTTTAATTTGAACTCGAATCGATTATAATTTAATGTGAAATTTCAGTAAACACTTTCTCGATTTCATCCCATTTTCAAAACTCGTCGACTTCCATTTTTTATGATGGGATGAACTAAAATTTACCCTTCTTTCTATTACTTCTATTTGAAATAATCCTTAATTCGATTTTTCATGATTGGTCTTTATCACATCAAACCCAGAATCTTCATTCCCATTTCCCCATTTTATGGGAGCTCATAAACGTAATGGATAGATGAAATAGTTCTTTTTTGAACTTTTTGATCATATTTCCATTTTCCCTGATTCAAATTCTTCATAATGTTTTTTT</canonical>
            <polymorphic>TGAACTAGATCATGATATGTTTCTTAAAAATCAACCGGTTGCAACGCGCGTATTTTCGCTCATCGTTTAAAACTGATCGCTTGAACCCAAGTGCATATGTTACAAATATACAAAAAGCGATTTTGTCGGTTTCATCACATTTTCAACATTCGCTAATTTCCATTTTCTATGATTCGATAAATGAACAAACTTCAACCCTTCTTACTGTTACCTCTATTAGAAATTCTCGTTTCTTCGATTTTTCATGATTGGTCTTTATCAAATCGCATCCAGAACCTTCAACCCCTTTTCCCCATTTGTTATGGGATAAAAATTATGGCCTTTTTAATTTTATTCGAACTTTTGCTGTTTCTAATTCTTCATAACATTTTACACCTTATTGGACTACCTGATTTCACATCTCCCCTTCGAGCTTTAATCTCCAAAAAGAAATCATTTTGACTAGAACTATTAACCTTCTTAAAGGTAATCTCATGAAATTCAGATCTTGGCTAGCTGAWGGTATTTTTTCAATCCTTCTTAATTCTATACCTAATGTTCCTGTTTCCGATTTCTCATATTTCTCATATTTTCTTCAATTCACCGTACGTATAAAATTTTGAAATCAAAAGAAACACCATTATAACTGACAATATTAACCTTCCTACAGGTAAATTCAATTTTGTTTTAAGTTTTAATTTGAACTCGAATCGATTATAATTTAATGTGAAATTTCAGTAAACACTTTCTCGATTTCATCCCATTTTCAAAACTCGTCGACTTCCATTTTTTATGATGGGATGAACTAAAATTTACCCTTCTTTCTATTACTTCTATTTGAAATAATCCTTAATTCGATTTTTCATGATTGGTCTTTATCACATCAAACCCAGAATCTTCATTCCCATTTCCCCATTTTATGGGAGCTCATAAACGTAATGGATAGATGAAATAGTTCTTTTTTGAACTTTTTGATCATATTTCCATTTTCCCTGATTCAAATTCTTCATAATGTTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTAATCTCCAAAAAGAAATCAT</pcr_primer_p1>
		<pcr_primer_p2>ATTGAATTTACCTGTAGGAAGGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTTTAATCTCCAAAAAGAAATCATTTTGACTAGAACTATTAACCTTCTTAAAGGTAATCTCATGAAATTCAGATCTTGGCTAGCTGAAGGTATTTTTTCAATCCTTCTTAATTCTATACCTAATGTTCCTGTTTCCGATTTCTCATATTTCTCATATTTTCTTCAATTCACCGTACGTATAAAATTTTGAAATCAAAAGAAACACCATTATAACTGACAATATTAACCTTCCTACAGGTAAATTCAAT</canonical_amplicon>
		<polymorphic_amplicon>CTTTAATCTCCAAAAAGAAATCATTTTGACTAGAACTATTAACCTTCTTAAAGGTAATCTCATGAAATTCAGATCTTGGCTAGCTGAWGGTATTTTTTCAATCCTTCTTAATTCTATACCTAATGTTCCTGTTTCCGATTTCTCATATTTCTCATATTTTCTTCAATTCACCGTACGTATAAAATTTTGAAATCAAAAGAAACACCATTATAACTGACAATATTAACCTTCCTACAGGTAAATTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8954</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>456224</contig_pos>
        <strand>+</strand>
        <context>CGTTTTTCCA[A/T]ACTTTGTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTGGACACATCGTTTTTCCA</left_flank>
        <right_flank>ACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCGTTTTATATATGTACTGTACTGTTTTGTTAATTTTTCACTACTTCAAATTGTAGGCACGATTCTCACCGCCTAGTTTTTCACCTCGAAATTGCATATTCATCGTTTGAATCGCTAGAAATCATGGTCTATAAAATTTTTAGTCTCATTTTGTTTTCTATTTTTTTATAGTTTCAGTTGGTCATTATTTCCTGCAAAATGATATATCGGCAATACTTCAATGAGAGTTTTTGAAAAATTCGAAGATTTTTTTTGATGCATAATTTTCAGAAACGACAGTAGCTGTGAGTTCGTTAACCCTCCTAATTTTCTTGGGCAGGCGCTTCACCGTTTTTGCTTTGTAAGTGATTTGTTTTCTTTGGATGTCAAAAATTACAATAGCTGTAAAGCCGAAATTCTCTGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAAAACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACCGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGGAAATCTTTAATAAAAAATGATAA</canonical>
            <polymorphic>TCCGTTTTATATATGTACTGTACTGTTTTGTTAATTTTTCACTACTTCAAATTGTAGGCACGATTCTCACCGCCTAGTTTTTCACCTCGAAATTGCATATTCATCGTTTGAATCGCTAGAAATCATGGTCTATAAAATTTTTAGTCTCATTTTGTTTTCTATTTTTTTATAGTTTCAGTTGGTCATTATTTCCTGCAAAATGATATATCGGCAATACTTCAATGAGAGTTTTTGAAAAATTCGAAGATTTTTTTTGATGCATAATTTTCAGAAACGACAGTAGCTGTGAGTTCGTTAACCCTCCTAATTTTCTTGGGCAGGCGCTTCACCGTTTTTGCTTTGTAAGTGATTTGTTTTCTTTGGATGTCAAAAATTACAATAGCTGTAAAGCCGAAATTCTCTGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTGGACACATCGTTTTTCCAWACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAAAACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACCGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGGAAATCTTTAATAAAAAATGATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATTCTCTGTAAACCAGTCAA</pcr_primer_p1>
		<pcr_primer_p2>TCACACTTTCTCAAAACTGTACTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAATTCTCTGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGA</canonical_amplicon>
		<polymorphic_amplicon>GAAATTCTCTGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTGGACACATCGTTTTTCCAWACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8955</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>456246</contig_pos>
        <strand>+</strand>
        <context>AAGAACTAAT[A/G]TTTCAGAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTTTTCTGTGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAAT</left_flank>
        <right_flank>TTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTTTTGTTAATTTTTCACTACTTCAAATTGTAGGCACGATTCTCACCGCCTAGTTTTTCACCTCGAAATTGCATATTCATCGTTTGAATCGCTAGAAATCATGGTCTATAAAATTTTTAGTCTCATTTTGTTTTCTATTTTTTTATAGTTTCAGTTGGTCATTATTTCCTGCAAAATGATATATCGGCAATACTTCAATGAGAGTTTTTGAAAAATTCGAAGATTTTTTTTGATGCATAATTTTCAGAAACGACAGTAGCTGTGAGTTCGTTAACCCTCCTAATTTTCTTGGGCAGGCGCTTCACCGTTTTTGCTTTGTAAGTGATTTGTTTTCTTTGGATGTCAAAAATTACAATAGCTGTAAAGCCGAAATTCTCTGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAAAACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACCGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGGAAATCTTTAATAAAAAATGATAAAAATCTACATATTATGCTTCAG</canonical>
            <polymorphic>CTGTTTTGTTAATTTTTCACTACTTCAAATTGTAGGCACGATTCTCACCGCCTAGTTTTTCACCTCGAAATTGCATATTCATCGTTTGAATCGCTAGAAATCATGGTCTATAAAATTTTTAGTCTCATTTTGTTTTCTATTTTTTTATAGTTTCAGTTGGTCATTATTTCCTGCAAAATGATATATCGGCAATACTTCAATGAGAGTTTTTGAAAAATTCGAAGATTTTTTTTGATGCATAATTTTCAGAAACGACAGTAGCTGTGAGTTCGTTAACCCTCCTAATTTTCTTGGGCAGGCGCTTCACCGTTTTTGCTTTGTAAGTGATTTGTTTTCTTTGGATGTCAAAAATTACAATAGCTGTAAAGCCGAAATTCTCTGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATRTTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAAAACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACCGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGGAAATCTTTAATAAAAAATGATAAAAATCTACATATTATGCTTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATTCTCTGTAAACCAGTCAA</pcr_primer_p1>
		<pcr_primer_p2>TCACACTTTCTCAAAACTGTACTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAATTCTCTGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGA</canonical_amplicon>
		<polymorphic_amplicon>GAAATTCTCTGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATRTTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8956</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>456368</contig_pos>
        <strand>+</strand>
        <context>AGTGTGAGAA[A/G]AYAGAAATCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAA</left_flank>
        <right_flank>ACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCATTTTGTTTTCTATTTTTTTATAGTTTCAGTTGGTCATTATTTCCTGCAAAATGATATATCGGCAATACTTCAATGAGAGTTTTTGAAAAATTCGAAGATTTTTTTTGATGCATAATTTTCAGAAACGACAGTAGCTGTGAGTTCGTTAACCCTCCTAATTTTCTTGGGCAGGCGCTTCACCGTTTTTGCTTTGTAAGTGATTTGTTTTCTTTGGATGTCAAAAATTACAATAGCTGTAAAGCCGAAATTCTCTGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAAAACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACCGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGGAAATCTTTAATAAAAAATGATAAAAATCTACATATTATGCTTCAGACTTGCTAAGATCCCCATTTTTTAAGGTAGATAAAATCTCTCTGTTTAGACGAATTTTAGTGGAAAAGTGGAACTTGTGGACCACCCAATCACCTTCAGTCAGACCTTGCCTGTTTTTTTAT</canonical>
            <polymorphic>TCTCATTTTGTTTTCTATTTTTTTATAGTTTCAGTTGGTCATTATTTCCTGCAAAATGATATATCGGCAATACTTCAATGAGAGTTTTTGAAAAATTCGAAGATTTTTTTTGATGCATAATTTTCAGAAACGACAGTAGCTGTGAGTTCGTTAACCCTCCTAATTTTCTTGGGCAGGCGCTTCACCGTTTTTGCTTTGTAAGTGATTTGTTTTCTTTGGATGTCAAAAATTACAATAGCTGTAAAGCCGAAATTCTCTGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAARACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACCGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGGAAATCTTTAATAAAAAATGATAAAAATCTACATATTATGCTTCAGACTTGCTAAGATCCCCATTTTTTAAGGTAGATAAAATCTCTCTGTTTAGACGAATTTTAGTGGAAAAGTGGAACTTGTGGACCACCCAATCACCTTCAGTCAGACCTTGCCTGTTTTTTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAGAATAAACGAAACTGTCAT</pcr_primer_p1>
		<pcr_primer_p2>GTTGAACAAAGAAATTAGAAGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAAAACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAAC</canonical_amplicon>
		<polymorphic_amplicon>TTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAARACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8957</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>456370</contig_pos>
        <strand>+</strand>
        <context>TGTGAGAARA[C/T]AGAAATCCGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAAAA</left_flank>
        <right_flank>AGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATTTTGTTTTCTATTTTTTTATAGTTTCAGTTGGTCATTATTTCCTGCAAAATGATATATCGGCAATACTTCAATGAGAGTTTTTGAAAAATTCGAAGATTTTTTTTGATGCATAATTTTCAGAAACGACAGTAGCTGTGAGTTCGTTAACCCTCCTAATTTTCTTGGGCAGGCGCTTCACCGTTTTTGCTTTGTAAGTGATTTGTTTTCTTTGGATGTCAAAAATTACAATAGCTGTAAAGCCGAAATTCTCTGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAAAACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACCGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGGAAATCTTTAATAAAAAATGATAAAAATCTACATATTATGCTTCAGACTTGCTAAGATCCCCATTTTTTAAGGTAGATAAAATCTCTCTGTTTAGACGAATTTTAGTGGAAAAGTGGAACTTGTGGACCACCCAATCACCTTCAGTCAGACCTTGCCTGTTTTTTTATAC</canonical>
            <polymorphic>TCATTTTGTTTTCTATTTTTTTATAGTTTCAGTTGGTCATTATTTCCTGCAAAATGATATATCGGCAATACTTCAATGAGAGTTTTTGAAAAATTCGAAGATTTTTTTTGATGCATAATTTTCAGAAACGACAGTAGCTGTGAGTTCGTTAACCCTCCTAATTTTCTTGGGCAGGCGCTTCACCGTTTTTGCTTTGTAAGTGATTTGTTTTCTTTGGATGTCAAAAATTACAATAGCTGTAAAGCCGAAATTCTCTGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAAAAYAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACCGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGGAAATCTTTAATAAAAAATGATAAAAATCTACATATTATGCTTCAGACTTGCTAAGATCCCCATTTTTTAAGGTAGATAAAATCTCTCTGTTTAGACGAATTTTAGTGGAAAAGTGGAACTTGTGGACCACCCAATCACCTTCAGTCAGACCTTGCCTGTTTTTTTATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAGAATAAACGAAACTGTCAT</pcr_primer_p1>
		<pcr_primer_p2>GTTGAACAAAGAAATTAGAAGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAAAACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAAC</canonical_amplicon>
		<polymorphic_amplicon>TTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAAAAYAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8958</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>456423</contig_pos>
        <strand>+</strand>
        <context>TCTTTACACA[C/T]CAGAAGATAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACA</left_flank>
        <right_flank>CAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGATATATCGGCAATACTTCAATGAGAGTTTTTGAAAAATTCGAAGATTTTTTTTGATGCATAATTTTCAGAAACGACAGTAGCTGTGAGTTCGTTAACCCTCCTAATTTTCTTGGGCAGGCGCTTCACCGTTTTTGCTTTGTAAGTGATTTGTTTTCTTTGGATGTCAAAAATTACAATAGCTGTAAAGCCGAAATTCTCTGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAAAACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACCGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGGAAATCTTTAATAAAAAATGATAAAAATCTACATATTATGCTTCAGACTTGCTAAGATCCCCATTTTTTAAGGTAGATAAAATCTCTCTGTTTAGACGAATTTTAGTGGAAAAGTGGAACTTGTGGACCACCCAATCACCTTCAGTCAGACCTTGCCTGTTTTTTTATACAATTTAGTATACCAGTTTCCCAAAAATACATGTTCTGCTTTTCATATCCATCT</canonical>
            <polymorphic>ATGATATATCGGCAATACTTCAATGAGAGTTTTTGAAAAATTCGAAGATTTTTTTTGATGCATAATTTTCAGAAACGACAGTAGCTGTGAGTTCGTTAACCCTCCTAATTTTCTTGGGCAGGCGCTTCACCGTTTTTGCTTTGTAAGTGATTTGTTTTCTTTGGATGTCAAAAATTACAATAGCTGTAAAGCCGAAATTCTCTGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAAAACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACAYCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACCGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGGAAATCTTTAATAAAAAATGATAAAAATCTACATATTATGCTTCAGACTTGCTAAGATCCCCATTTTTTAAGGTAGATAAAATCTCTCTGTTTAGACGAATTTTAGTGGAAAAGTGGAACTTGTGGACCACCCAATCACCTTCAGTCAGACCTTGCCTGTTTTTTTATACAATTTAGTATACCAGTTTCCCAAAAATACATGTTCTGCTTTTCATATCCATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>257 210 174 103 98 75 71 12</canonical_bands>
                <polymorphic_bands>384 257 103 98 75 71 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACAGTTTTGAGAAAGTGTGAGA</pcr_primer_p1>
		<pcr_primer_p2>CAAATGACTACAACGGTTATTCT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TACAGTTTTGAGAAAGTGTGAGAAAACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACCGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTG</canonical_amplicon>
		<polymorphic_amplicon>TACAGTTTTGAGAAAGTGTGAGAAAACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACAYCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACCGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8959</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>456487</contig_pos>
        <strand>+</strand>
        <context>TTTGTTCAAC[A/C]GTCAACGCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAAC</left_flank>
        <right_flank>GTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTCAGAAACGACAGTAGCTGTGAGTTCGTTAACCCTCCTAATTTTCTTGGGCAGGCGCTTCACCGTTTTTGCTTTGTAAGTGATTTGTTTTCTTTGGATGTCAAAAATTACAATAGCTGTAAAGCCGAAATTCTCTGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAAAACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACCGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGGAAATCTTTAATAAAAAATGATAAAAATCTACATATTATGCTTCAGACTTGCTAAGATCCCCATTTTTTAAGGTAGATAAAATCTCTCTGTTTAGACGAATTTTAGTGGAAAAGTGGAACTTGTGGACCACCCAATCACCTTCAGTCAGACCTTGCCTGTTTTTTTATACAATTTAGTATACCAGTTTCCCAAAAATACATGTTCTGCTTTTCATATCCATCTGAACCTTTTAAAGGTGGGGGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGA</canonical>
            <polymorphic>ATTTTCAGAAACGACAGTAGCTGTGAGTTCGTTAACCCTCCTAATTTTCTTGGGCAGGCGCTTCACCGTTTTTGCTTTGTAAGTGATTTGTTTTCTTTGGATGTCAAAAATTACAATAGCTGTAAAGCCGAAATTCTCTGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAAAACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACMGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGGAAATCTTTAATAAAAAATGATAAAAATCTACATATTATGCTTCAGACTTGCTAAGATCCCCATTTTTTAAGGTAGATAAAATCTCTCTGTTTAGACGAATTTTAGTGGAAAAGTGGAACTTGTGGACCACCCAATCACCTTCAGTCAGACCTTGCCTGTTTTTTTATACAATTTAGTATACCAGTTTCCCAAAAATACATGTTCTGCTTTTCATATCCATCTGAACCTTTTAAAGGTGGGGGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACAGTTTTGAGAAAGTGTGAGA</pcr_primer_p1>
		<pcr_primer_p2>CAAATGACTACAACGGTTATTCT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TACAGTTTTGAGAAAGTGTGAGAAAACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACCGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTG</canonical_amplicon>
		<polymorphic_amplicon>TACAGTTTTGAGAAAGTGTGAGAAAACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACMGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8960</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>456554</contig_pos>
        <strand>+</strand>
        <context>TCTTTGTTTC[A/C]AAGAATTACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTC</left_flank>
        <right_flank>AAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTTGCTTTGTAAGTGATTTGTTTTCTTTGGATGTCAAAAATTACAATAGCTGTAAAGCCGAAATTCTCTGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAAAACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACCGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGGAAATCTTTAATAAAAAATGATAAAAATCTACATATTATGCTTCAGACTTGCTAAGATCCCCATTTTTTAAGGTAGATAAAATCTCTCTGTTTAGACGAATTTTAGTGGAAAAGTGGAACTTGTGGACCACCCAATCACCTTCAGTCAGACCTTGCCTGTTTTTTTATACAATTTAGTATACCAGTTTCCCAAAAATACATGTTCTGCTTTTCATATCCATCTGAACCTTTTAAAGGTGGGGGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCTCTTTAACGCGTAGACTTCAATTAAAGGTTCAGTGAAATCAAACAACATATTCATCTGTTTCA</canonical>
            <polymorphic>GTTTTTGCTTTGTAAGTGATTTGTTTTCTTTGGATGTCAAAAATTACAATAGCTGTAAAGCCGAAATTCTCTGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAAAACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACCGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCMAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGGAAATCTTTAATAAAAAATGATAAAAATCTACATATTATGCTTCAGACTTGCTAAGATCCCCATTTTTTAAGGTAGATAAAATCTCTCTGTTTAGACGAATTTTAGTGGAAAAGTGGAACTTGTGGACCACCCAATCACCTTCAGTCAGACCTTGCCTGTTTTTTTATACAATTTAGTATACCAGTTTCCCAAAAATACATGTTCTGCTTTTCATATCCATCTGAACCTTTTAAAGGTGGGGGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCTCTTTAACGCGTAGACTTCAATTAAAGGTTCAGTGAAATCAAACAACATATTCATCTGTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGGTCCGTTTTCTTTACAC</pcr_primer_p1>
		<pcr_primer_p2>TTTCAGATTGTATTTCTGACTTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACCGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAA</canonical_amplicon>
		<polymorphic_amplicon>AATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACCGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCMAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8961</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>456574</contig_pos>
        <strand>+</strand>
        <context>TGTTTCAAAT[C/T]TAGAATAACC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAAT</left_flank>
        <right_flank>TAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATAT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTTTTCTTTGGATGTCAAAAATTACAATAGCTGTAAAGCCGAAATTCTCTGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAAAACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACCGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGGAAATCTTTAATAAAAAATGATAAAAATCTACATATTATGCTTCAGACTTGCTAAGATCCCCATTTTTTAAGGTAGATAAAATCTCTCTGTTTAGACGAATTTTAGTGGAAAAGTGGAACTTGTGGACCACCCAATCACCTTCAGTCAGACCTTGCCTGTTTTTTTATACAATTTAGTATACCAGTTTCCCAAAAATACATGTTCTGCTTTTCATATCCATCTGAACCTTTTAAAGGTGGGGGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCTCTTTAACGCGTAGACTTCAATTAAAGGTTCAGTGAAATCAAACAACATATTCATCTGTTTCAACGTATTCATTAGGCCAACA</canonical>
            <polymorphic>TTGTTTTCTTTGGATGTCAAAAATTACAATAGCTGTAAAGCCGAAATTCTCTGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAAAACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACCGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATYTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGGAAATCTTTAATAAAAAATGATAAAAATCTACATATTATGCTTCAGACTTGCTAAGATCCCCATTTTTTAAGGTAGATAAAATCTCTCTGTTTAGACGAATTTTAGTGGAAAAGTGGAACTTGTGGACCACCCAATCACCTTCAGTCAGACCTTGCCTGTTTTTTTATACAATTTAGTATACCAGTTTCCCAAAAATACATGTTCTGCTTTTCATATCCATCTGAACCTTTTAAAGGTGGGGGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCTCTTTAACGCGTAGACTTCAATTAAAGGTTCAGTGAAATCAAACAACATATTCATCTGTTTCAACGTATTCATTAGGCCAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>174 162 149 121 111 106 102 44 20 11</canonical_bands>
                <polymorphic_bands>232 174 162 149 106 102 44 20 11</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>149 149 106 102 79 72 64 50 38 37 23 21 21 20 18 14 13 11 9 4</canonical_bands>
                <polymorphic_bands>149 149 106 102 92 72 64 50 38 37 23 21 21 20 18 14 11 9 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGTTCGTTTTCTGTAGACAC</pcr_primer_p1>
		<pcr_primer_p2>TCTTAGCAAGTCTGAAGCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGGAAATCTTTAATAAAAAATGATAAAAATCTACATATTATGCTTCAGACTTGCTAAGA</canonical_amplicon>
		<polymorphic_amplicon>AATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATYTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGGAAATCTTTAATAAAAAATGATAAAAATCTACATATTATGCTTCAGACTTGCTAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8962</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>456625</contig_pos>
        <strand>+</strand>
        <context>TCAAGAATAT[A/T]TGGAAAGTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATAT</left_flank>
        <right_flank>TGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAAAACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACCGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGGAAATCTTTAATAAAAAATGATAAAAATCTACATATTATGCTTCAGACTTGCTAAGATCCCCATTTTTTAAGGTAGATAAAATCTCTCTGTTTAGACGAATTTTAGTGGAAAAGTGGAACTTGTGGACCACCCAATCACCTTCAGTCAGACCTTGCCTGTTTTTTTATACAATTTAGTATACCAGTTTCCCAAAAATACATGTTCTGCTTTTCATATCCATCTGAACCTTTTAAAGGTGGGGGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCTCTTTAACGCGTAGACTTCAATTAAAGGTTCAGTGAAATCAAACAACATATTCATCTGTTTCAACGTATTCATTAGGCCAACATCTCTAATTACCCTAACTCAACCTTATTATTTCATCTATCACCTTCTATCT</canonical>
            <polymorphic>TGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAAAACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACCGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATWTGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGGAAATCTTTAATAAAAAATGATAAAAATCTACATATTATGCTTCAGACTTGCTAAGATCCCCATTTTTTAAGGTAGATAAAATCTCTCTGTTTAGACGAATTTTAGTGGAAAAGTGGAACTTGTGGACCACCCAATCACCTTCAGTCAGACCTTGCCTGTTTTTTTATACAATTTAGTATACCAGTTTCCCAAAAATACATGTTCTGCTTTTCATATCCATCTGAACCTTTTAAAGGTGGGGGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCTCTTTAACGCGTAGACTTCAATTAAAGGTTCAGTGAAATCAAACAACATATTCATCTGTTTCAACGTATTCATTAGGCCAACATCTCTAATTACCCTAACTCAACCTTATTATTTCATCTATCACCTTCTATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGTTCGTTTTCTGTAGACAC</pcr_primer_p1>
		<pcr_primer_p2>TCTTAGCAAGTCTGAAGCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGGAAATCTTTAATAAAAAATGATAAAAATCTACATATTATGCTTCAGACTTGCTAAGA</canonical_amplicon>
		<polymorphic_amplicon>AATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATWTGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGGAAATCTTTAATAAAAAATGATAAAAATCTACATATTATGCTTCAGACTTGCTAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8963</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>459554</contig_pos>
        <strand>+</strand>
        <context>CCCGTCYCCG[C/T]ATAATTTGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACGATTCCTTCACACGGAGCATTGCTTCATTTGGACCTCCCGTCTCCG</left_flank>
        <right_flank>ATAATTTGCAAAAACTACTCAAACAAACCCAGGAAACTCTTGCGGTCTGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTCAACCAACCAGATTTTTGAATCCGATACGAGAGTCTCACAATCAAAATGAGGGATTGGGCAAAGCGGAAGGAGTGGATGAAAAAGTGGTGAGTTGATACAATGAAATTGGAAAGGTTGGAAAATGCAATTTTCAGATTAGATTTTTCGAAGATTTCCATACGAGAAGAAAGATGACGCAGAAGATGAAGGAGGCAAAGTCAGGACTCGAGGGTCCAGCTCAACCAGTAACAGCTCAAGTTGGACAAAGTCCATGGCCAGAATCAGCTATTGAATCGGAAGCTACTCAACCTCTATTGCATGAACTCCATCAAGACATAAAGCAAGAAATCGGGGATCTAGCTCCACCAGTGCCAGTTGCTGAAGTGGTTCACAGTCATCAATCTCATGGAGCGCAAAACCTGGAAAACCTGATTGATGATGATCGTTATGAGACGGAAGAGGAAAAAACGATTCCTTCACACGGAGCATTGCTTCATTTGGACCTCCCGTCTCCGTATAATTTGCAAAAACTACTCAAACAAACCCAGGAAACTCTTGCGGTCTGTCATGCTAACGTTGCTGAGAAACAATCCGGAAAAATAGACTACACCACGTCTCCAATGGCTGAAGCACCAACGATTTCAGTCCCAGCTCTAAATTATCAAGCGGATCGTTCTCAACAAGATGCAAGATCTCAAGCGCGTCTTCTCGCTGACCTATCTCGTCAAATGACAGCCATACAACAGACCCTGGGAGCATATATGGCTGCCACTCCAAGAACCCATGTTCCCAACAAGCGGAAACGCTCACCATCTCTAGAAGTTGTTACTAATGGGCCATCAGTATCCCCTCCTGTTGCTAAGAGAGCCAATCATCAAGAAGCTGTCAGCTTTGATGGAGTCGAAGTCCAGAAAGCTCCGGAAGCTTTGAGAGGAGTCAATGAAATTGTGGCGCCAACACCAGAACGACAGGCCCAGCTGCGTCAGGAACGCCTGAATCTGTACAATGGAGAGTTC</canonical>
            <polymorphic>TGTTCAACCAACCAGATTTTTGAATCCGATACGAGAGTCTCACAATCAAAATGAGGGATTGGGCAAAGCGGAAGGAGTGGATGAAAAAGTGGTGAGTTGATACAATGAAATTGGAAAGGTTGGAAAATGCAATTTTCAGATTAGATTTTTCGAAGATTTCCATACGAGAAGAAAGATGACGCAGAAGATGAAGGAGGCAAAGTCAGGACTCGAGGGTCCAGCTCAACCAGTAACAGCTCAAGTTGGACAAAGTCCATGGCCAGAATCAGCTATTGAATCGGAAGCTACTCAACCTCTATTGCATGAACTCCATCAAGACATAAAGCAAGAAATCGGGGATCTAGCTCCACCAGTGCCAGTTGCTGAAGTGGTTCACAGTCATCAATCTCATGGAGCGCAAAACCTGGAAAACCTGATTGATGATGATCGTTATGAGACGGAAGAGGAAAAAACGATTCCTTCACACGGAGCATTGCTTCATTTGGACCTCCCGTCTCCGYATAATTTGCAAAAACTACTCAAACAAACCCAGGAAACTCTTGCGGTCTGTCATGCTAACGTTGCTGAGAAACAATCCGGAAAAATAGACTACACCACGTCTCCAATGGCTGAAGCACCAACGATTTCAGTCCCAGCTCTAAATTATCAAGCGGATCGTTCTCAACAAGATGCAAGATCTCAAGCGCGTCTTCTCGCTGACCTATCTCGTCAAATGACAGCCATACAACAGACCCTGGGAGCATATATGGCTGCCACTCCAAGAACCCATGTTCCCAACAAGCGGAAACGCTCACCATCTCTAGAAGTTGTTACTAATGGGCCATCAGTATCCCCTCCTGTTGCTAAGAGAGCCAATCATCAAGAAGCTGTCAGCTTTGATGGAGTCGAAGTCCAGAAAGCTCCGGAAGCTTTGAGAGGAGTCAATGAAATTGTGGCGCCAACACCAGAACGACAGGCCCAGCTGCGTCAGGAACGCCTGAATCTGTACAATGGAGAGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGATGATGATCGTTATGAGAC</pcr_primer_p1>
		<pcr_primer_p2>CTTGATAATTTAGAGCTGGGACT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>ATTGATGATGATCGTTATGAGACGGAAGAGGAAAAAACGATTCCTTCACACGGAGCATTGCTTCATTTGGACCTCCCGTCTCCGTATAATTTGCAAAAACTACTCAAACAAACCCAGGAAACTCTTGCGGTCTGTCATGCTAACGTTGCTGAGAAACAATCCGGAAAAATAGACTACACCACGTCTCCAATGGCTGAAGCACCAACGATTTCAGTCCCAGCTCTAAATTATCAAG</canonical_amplicon>
		<polymorphic_amplicon>ATTGATGATGATCGTTATGAGACGGAAGAGGAAAAAACGATTCCTTCACACGGAGCATTGCTTCATTTGGACCTCCCGTCTCCGYATAATTTGCAAAAACTACTCAAACAAACCCAGGAAACTCTTGCGGTCTGTCATGCTAACGTTGCTGAGAAACAATCCGGAAAAATAGACTACACCACGTCTCCAATGGCTGAAGCACCAACGATTTCAGTCCCAGCTCTAAATTATCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8964</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>459550</contig_pos>
        <strand>+</strand>
        <context>AYCTCCCGTC[C/T]CCGYATAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAAAACGATTCCTTCACACGGAGCATTGCTTCATTTGGACCTCCCGTC</left_flank>
        <right_flank>CCGTATAATTTGCAAAAACTACTCAAACAAACCCAGGAAACTCTTGCGGT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACATGTTCAACCAACCAGATTTTTGAATCCGATACGAGAGTCTCACAATCAAAATGAGGGATTGGGCAAAGCGGAAGGAGTGGATGAAAAAGTGGTGAGTTGATACAATGAAATTGGAAAGGTTGGAAAATGCAATTTTCAGATTAGATTTTTCGAAGATTTCCATACGAGAAGAAAGATGACGCAGAAGATGAAGGAGGCAAAGTCAGGACTCGAGGGTCCAGCTCAACCAGTAACAGCTCAAGTTGGACAAAGTCCATGGCCAGAATCAGCTATTGAATCGGAAGCTACTCAACCTCTATTGCATGAACTCCATCAAGACATAAAGCAAGAAATCGGGGATCTAGCTCCACCAGTGCCAGTTGCTGAAGTGGTTCACAGTCATCAATCTCATGGAGCGCAAAACCTGGAAAACCTGATTGATGATGATCGTTATGAGACGGAAGAGGAAAAAACGATTCCTTCACACGGAGCATTGCTTCATTTGGACCTCCCGTCTCCGTATAATTTGCAAAAACTACTCAAACAAACCCAGGAAACTCTTGCGGTCTGTCATGCTAACGTTGCTGAGAAACAATCCGGAAAAATAGACTACACCACGTCTCCAATGGCTGAAGCACCAACGATTTCAGTCCCAGCTCTAAATTATCAAGCGGATCGTTCTCAACAAGATGCAAGATCTCAAGCGCGTCTTCTCGCTGACCTATCTCGTCAAATGACAGCCATACAACAGACCCTGGGAGCATATATGGCTGCCACTCCAAGAACCCATGTTCCCAACAAGCGGAAACGCTCACCATCTCTAGAAGTTGTTACTAATGGGCCATCAGTATCCCCTCCTGTTGCTAAGAGAGCCAATCATCAAGAAGCTGTCAGCTTTGATGGAGTCGAAGTCCAGAAAGCTCCGGAAGCTTTGAGAGGAGTCAATGAAATTGTGGCGCCAACACCAGAACGACAGGCCCAGCTGCGTCAGGAACGCCTGAATCTGTACAATGGAGA</canonical>
            <polymorphic>TACATGTTCAACCAACCAGATTTTTGAATCCGATACGAGAGTCTCACAATCAAAATGAGGGATTGGGCAAAGCGGAAGGAGTGGATGAAAAAGTGGTGAGTTGATACAATGAAATTGGAAAGGTTGGAAAATGCAATTTTCAGATTAGATTTTTCGAAGATTTCCATACGAGAAGAAAGATGACGCAGAAGATGAAGGAGGCAAAGTCAGGACTCGAGGGTCCAGCTCAACCAGTAACAGCTCAAGTTGGACAAAGTCCATGGCCAGAATCAGCTATTGAATCGGAAGCTACTCAACCTCTATTGCATGAACTCCATCAAGACATAAAGCAAGAAATCGGGGATCTAGCTCCACCAGTGCCAGTTGCTGAAGTGGTTCACAGTCATCAATCTCATGGAGCGCAAAACCTGGAAAACCTGATTGATGATGATCGTTATGAGACGGAAGAGGAAAAAACGATTCCTTCACACGGAGCATTGCTTCATTTGGACCTCCCGTCYCCGTATAATTTGCAAAAACTACTCAAACAAACCCAGGAAACTCTTGCGGTCTGTCATGCTAACGTTGCTGAGAAACAATCCGGAAAAATAGACTACACCACGTCTCCAATGGCTGAAGCACCAACGATTTCAGTCCCAGCTCTAAATTATCAAGCGGATCGTTCTCAACAAGATGCAAGATCTCAAGCGCGTCTTCTCGCTGACCTATCTCGTCAAATGACAGCCATACAACAGACCCTGGGAGCATATATGGCTGCCACTCCAAGAACCCATGTTCCCAACAAGCGGAAACGCTCACCATCTCTAGAAGTTGTTACTAATGGGCCATCAGTATCCCCTCCTGTTGCTAAGAGAGCCAATCATCAAGAAGCTGTCAGCTTTGATGGAGTCGAAGTCCAGAAAGCTCCGGAAGCTTTGAGAGGAGTCAATGAAATTGTGGCGCCAACACCAGAACGACAGGCCCAGCTGCGTCAGGAACGCCTGAATCTGTACAATGGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGATGATGATCGTTATGAGAC</pcr_primer_p1>
		<pcr_primer_p2>CTTGATAATTTAGAGCTGGGACT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>ATTGATGATGATCGTTATGAGACGGAAGAGGAAAAAACGATTCCTTCACACGGAGCATTGCTTCATTTGGACCTCCCGTCTCCGTATAATTTGCAAAAACTACTCAAACAAACCCAGGAAACTCTTGCGGTCTGTCATGCTAACGTTGCTGAGAAACAATCCGGAAAAATAGACTACACCACGTCTCCAATGGCTGAAGCACCAACGATTTCAGTCCCAGCTCTAAATTATCAAG</canonical_amplicon>
		<polymorphic_amplicon>ATTGATGATGATCGTTATGAGACGGAAGAGGAAAAAACGATTCCTTCACACGGAGCATTGCTTCATTTGGACCTCCCGTCYCCGTATAATTTGCAAAAACTACTCAAACAAACCCAGGAAACTCTTGCGGTCTGTCATGCTAACGTTGCTGAGAAACAATCCGGAAAAATAGACTACACCACGTCTCCAATGGCTGAAGCACCAACGATTTCAGTCCCAGCTCTAAATTATCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8965</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>459541</contig_pos>
        <strand>+</strand>
        <context>TTCATTTGGA[C/T]CTCCCGTCYC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGGAAGAGGAAAAAACGATTCCTTCACACGGAGCATTGCTTCATTTGGA</left_flank>
        <right_flank>CTCCCGTCTCCGTATAATTTGCAAAAACTACTCAAACAAACCCAGGAAAC</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATATCACTACATGTTCAACCAACCAGATTTTTGAATCCGATACGAGAGTCTCACAATCAAAATGAGGGATTGGGCAAAGCGGAAGGAGTGGATGAAAAAGTGGTGAGTTGATACAATGAAATTGGAAAGGTTGGAAAATGCAATTTTCAGATTAGATTTTTCGAAGATTTCCATACGAGAAGAAAGATGACGCAGAAGATGAAGGAGGCAAAGTCAGGACTCGAGGGTCCAGCTCAACCAGTAACAGCTCAAGTTGGACAAAGTCCATGGCCAGAATCAGCTATTGAATCGGAAGCTACTCAACCTCTATTGCATGAACTCCATCAAGACATAAAGCAAGAAATCGGGGATCTAGCTCCACCAGTGCCAGTTGCTGAAGTGGTTCACAGTCATCAATCTCATGGAGCGCAAAACCTGGAAAACCTGATTGATGATGATCGTTATGAGACGGAAGAGGAAAAAACGATTCCTTCACACGGAGCATTGCTTCATTTGGACCTCCCGTCTCCGTATAATTTGCAAAAACTACTCAAACAAACCCAGGAAACTCTTGCGGTCTGTCATGCTAACGTTGCTGAGAAACAATCCGGAAAAATAGACTACACCACGTCTCCAATGGCTGAAGCACCAACGATTTCAGTCCCAGCTCTAAATTATCAAGCGGATCGTTCTCAACAAGATGCAAGATCTCAAGCGCGTCTTCTCGCTGACCTATCTCGTCAAATGACAGCCATACAACAGACCCTGGGAGCATATATGGCTGCCACTCCAAGAACCCATGTTCCCAACAAGCGGAAACGCTCACCATCTCTAGAAGTTGTTACTAATGGGCCATCAGTATCCCCTCCTGTTGCTAAGAGAGCCAATCATCAAGAAGCTGTCAGCTTTGATGGAGTCGAAGTCCAGAAAGCTCCGGAAGCTTTGAGAGGAGTCAATGAAATTGTGGCGCCAACACCAGAACGACAGGCCCAGCTGCGTCAGGAACGCCTGAATCTGTA</canonical>
            <polymorphic>CAATATCACTACATGTTCAACCAACCAGATTTTTGAATCCGATACGAGAGTCTCACAATCAAAATGAGGGATTGGGCAAAGCGGAAGGAGTGGATGAAAAAGTGGTGAGTTGATACAATGAAATTGGAAAGGTTGGAAAATGCAATTTTCAGATTAGATTTTTCGAAGATTTCCATACGAGAAGAAAGATGACGCAGAAGATGAAGGAGGCAAAGTCAGGACTCGAGGGTCCAGCTCAACCAGTAACAGCTCAAGTTGGACAAAGTCCATGGCCAGAATCAGCTATTGAATCGGAAGCTACTCAACCTCTATTGCATGAACTCCATCAAGACATAAAGCAAGAAATCGGGGATCTAGCTCCACCAGTGCCAGTTGCTGAAGTGGTTCACAGTCATCAATCTCATGGAGCGCAAAACCTGGAAAACCTGATTGATGATGATCGTTATGAGACGGAAGAGGAAAAAACGATTCCTTCACACGGAGCATTGCTTCATTTGGAYCTCCCGTCTCCGTATAATTTGCAAAAACTACTCAAACAAACCCAGGAAACTCTTGCGGTCTGTCATGCTAACGTTGCTGAGAAACAATCCGGAAAAATAGACTACACCACGTCTCCAATGGCTGAAGCACCAACGATTTCAGTCCCAGCTCTAAATTATCAAGCGGATCGTTCTCAACAAGATGCAAGATCTCAAGCGCGTCTTCTCGCTGACCTATCTCGTCAAATGACAGCCATACAACAGACCCTGGGAGCATATATGGCTGCCACTCCAAGAACCCATGTTCCCAACAAGCGGAAACGCTCACCATCTCTAGAAGTTGTTACTAATGGGCCATCAGTATCCCCTCCTGTTGCTAAGAGAGCCAATCATCAAGAAGCTGTCAGCTTTGATGGAGTCGAAGTCCAGAAAGCTCCGGAAGCTTTGAGAGGAGTCAATGAAATTGTGGCGCCAACACCAGAACGACAGGCCCAGCTGCGTCAGGAACGCCTGAATCTGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>503 269 228</canonical_bands>
                <polymorphic_bands>772 228</polymorphic_bands>
            </assay>
            <assay>
                <site>GACNNNNNGTC</site>
                <isoschizomers>
                    <enzyme>AhdI</enzyme>
                    <enzyme>AspEI</enzyme>
                    <enzyme>Eam1105I</enzyme>
                    <enzyme>EclHKI</enzyme>
                    <enzyme>NruGI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>334 269 228 137 32</canonical_bands>
                <polymorphic_bands>603 228 137 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGATGATGATCGTTATGAGAC</pcr_primer_p1>
		<pcr_primer_p2>CTTGATAATTTAGAGCTGGGACT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>ATTGATGATGATCGTTATGAGACGGAAGAGGAAAAAACGATTCCTTCACACGGAGCATTGCTTCATTTGGACCTCCCGTCTCCGTATAATTTGCAAAAACTACTCAAACAAACCCAGGAAACTCTTGCGGTCTGTCATGCTAACGTTGCTGAGAAACAATCCGGAAAAATAGACTACACCACGTCTCCAATGGCTGAAGCACCAACGATTTCAGTCCCAGCTCTAAATTATCAAG</canonical_amplicon>
		<polymorphic_amplicon>ATTGATGATGATCGTTATGAGACGGAAGAGGAAAAAACGATTCCTTCACACGGAGCATTGCTTCATTTGGAYCTCCCGTCTCCGTATAATTTGCAAAAACTACTCAAACAAACCCAGGAAACTCTTGCGGTCTGTCATGCTAACGTTGCTGAGAAACAATCCGGAAAAATAGACTACACCACGTCTCCAATGGCTGAAGCACCAACGATTTCAGTCCCAGCTCTAAATTATCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8966</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>459305</contig_pos>
        <strand>+</strand>
        <context>AGTTGGACAA[A/G]GTCCATGGCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTCAGGACTCGAGGGTCCAGCTCAACCAGTAACAGCTCAAGTTGGACAA</left_flank>
        <right_flank>GTCCATGGCCAGAATCAGCTATTGAATCGGAAGCTACTCAACCTCTATTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTCAATCTCCATTACTTCCAAATGGTCCAGACAATCAACAAGAACTCGAAGATCCAGTTCCAAACACTGAAATGGTTCATTATCAACAAACTCAAGGAGCTCAAAACCAAGAAGGGCTAGTGGAAGATGAGCAATATGAGATTCAAGAGGATGAGACGATTCCTTCCCATGGAGCACTACCAGATTGGGACTTCGTGTTCGCGCATATGCGGCAAAATCCAGAGGACCAAGCTCCAATATCACTACATGTTCAACCAACCAGATTTTTGAATCCGATACGAGAGTCTCACAATCAAAATGAGGGATTGGGCAAAGCGGAAGGAGTGGATGAAAAAGTGGTGAGTTGATACAATGAAATTGGAAAGGTTGGAAAATGCAATTTTCAGATTAGATTTTTCGAAGATTTCCATACGAGAAGAAAGATGACGCAGAAGATGAAGGAGGCAAAGTCAGGACTCGAGGGTCCAGCTCAACCAGTAACAGCTCAAGTTGGACAAAGTCCATGGCCAGAATCAGCTATTGAATCGGAAGCTACTCAACCTCTATTGCATGAACTCCATCAAGACATAAAGCAAGAAATCGGGGATCTAGCTCCACCAGTGCCAGTTGCTGAAGTGGTTCACAGTCATCAATCTCATGGAGCGCAAAACCTGGAAAACCTGATTGATGATGATCGTTATGAGACGGAAGAGGAAAAAACGATTCCTTCACACGGAGCATTGCTTCATTTGGACCTCCCGTCTCCGTATAATTTGCAAAAACTACTCAAACAAACCCAGGAAACTCTTGCGGTCTGTCATGCTAACGTTGCTGAGAAACAATCCGGAAAAATAGACTACACCACGTCTCCAATGGCTGAAGCACCAACGATTTCAGTCCCAGCTCTAAATTATCAAGCGGATCGTTCTCAACAAGATGCAAGATCTCAAGCGCGTCTTCTCGCTGACCTATCTCGTCAAATGACAGCCATACAACAGACCCTGGGAGCATATATGGCT</canonical>
            <polymorphic>TGTTCAATCTCCATTACTTCCAAATGGTCCAGACAATCAACAAGAACTCGAAGATCCAGTTCCAAACACTGAAATGGTTCATTATCAACAAACTCAAGGAGCTCAAAACCAAGAAGGGCTAGTGGAAGATGAGCAATATGAGATTCAAGAGGATGAGACGATTCCTTCCCATGGAGCACTACCAGATTGGGACTTCGTGTTCGCGCATATGCGGCAAAATCCAGAGGACCAAGCTCCAATATCACTACATGTTCAACCAACCAGATTTTTGAATCCGATACGAGAGTCTCACAATCAAAATGAGGGATTGGGCAAAGCGGAAGGAGTGGATGAAAAAGTGGTGAGTTGATACAATGAAATTGGAAAGGTTGGAAAATGCAATTTTCAGATTAGATTTTTCGAAGATTTCCATACGAGAAGAAAGATGACGCAGAAGATGAAGGAGGCAAAGTCAGGACTCGAGGGTCCAGCTCAACCAGTAACAGCTCAAGTTGGACAARGTCCATGGCCAGAATCAGCTATTGAATCGGAAGCTACTCAACCTCTATTGCATGAACTCCATCAAGACATAAAGCAAGAAATCGGGGATCTAGCTCCACCAGTGCCAGTTGCTGAAGTGGTTCACAGTCATCAATCTCATGGAGCGCAAAACCTGGAAAACCTGATTGATGATGATCGTTATGAGACGGAAGAGGAAAAAACGATTCCTTCACACGGAGCATTGCTTCATTTGGACCTCCCGTCTCCGTATAATTTGCAAAAACTACTCAAACAAACCCAGGAAACTCTTGCGGTCTGTCATGCTAACGTTGCTGAGAAACAATCCGGAAAAATAGACTACACCACGTCTCCAATGGCTGAAGCACCAACGATTTCAGTCCCAGCTCTAAATTATCAAGCGGATCGTTCTCAACAAGATGCAAGATCTCAAGCGCGTCTTCTCGCTGACCTATCTCGTCAAATGACAGCCATACAACAGACCCTGGGAGCATATATGGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGTGGTGAGTTGATACAAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTCTTGCTTTATGTCTTGATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGTGGTGAGTTGATACAATGAAATTGGAAAGGTTGGAAAATGCAATTTTCAGATTAGATTTTTCGAAGATTTCCATACGAGAAGAAAGATGACGCAGAAGATGAAGGAGGCAAAGTCAGGACTCGAGGGTCCAGCTCAACCAGTAACAGCTCAAGTTGGACAAAGTCCATGGCCAGAATCAGCTATTGAATCGGAAGCTACTCAACCTCTATTGCATGAACTCCATCAAGACATAAAGCAAGAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGTGGTGAGTTGATACAATGAAATTGGAAAGGTTGGAAAATGCAATTTTCAGATTAGATTTTTCGAAGATTTCCATACGAGAAGAAAGATGACGCAGAAGATGAAGGAGGCAAAGTCAGGACTCGAGGGTCCAGCTCAACCAGTAACAGCTCAAGTTGGACAARGTCCATGGCCAGAATCAGCTATTGAATCGGAAGCTACTCAACCTCTATTGCATGAACTCCATCAAGACATAAAGCAAGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8967</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>459209</contig_pos>
        <strand>+</strand>
        <context>ATTTTTCGAA[G/T]ATTTCCATAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGAAATTGGAAAGGTTGGAAAATGCAATTTTCAGATTAGATTTTTCGAA</left_flank>
        <right_flank>ATTTCCATACGAGAAGAAAGATGACGCAGAAGATGAAGGAGGCAAAGTCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCGAGAGTCCAACTCAACCAGCTCCATCGACTCGTCCTAATGTTTTTATAGTTGCTCACGAGGATCCAGACCCACCAGTGTCAGCCACAGAAACTGTTCAATCTCCATTACTTCCAAATGGTCCAGACAATCAACAAGAACTCGAAGATCCAGTTCCAAACACTGAAATGGTTCATTATCAACAAACTCAAGGAGCTCAAAACCAAGAAGGGCTAGTGGAAGATGAGCAATATGAGATTCAAGAGGATGAGACGATTCCTTCCCATGGAGCACTACCAGATTGGGACTTCGTGTTCGCGCATATGCGGCAAAATCCAGAGGACCAAGCTCCAATATCACTACATGTTCAACCAACCAGATTTTTGAATCCGATACGAGAGTCTCACAATCAAAATGAGGGATTGGGCAAAGCGGAAGGAGTGGATGAAAAAGTGGTGAGTTGATACAATGAAATTGGAAAGGTTGGAAAATGCAATTTTCAGATTAGATTTTTCGAAGATTTCCATACGAGAAGAAAGATGACGCAGAAGATGAAGGAGGCAAAGTCAGGACTCGAGGGTCCAGCTCAACCAGTAACAGCTCAAGTTGGACAAAGTCCATGGCCAGAATCAGCTATTGAATCGGAAGCTACTCAACCTCTATTGCATGAACTCCATCAAGACATAAAGCAAGAAATCGGGGATCTAGCTCCACCAGTGCCAGTTGCTGAAGTGGTTCACAGTCATCAATCTCATGGAGCGCAAAACCTGGAAAACCTGATTGATGATGATCGTTATGAGACGGAAGAGGAAAAAACGATTCCTTCACACGGAGCATTGCTTCATTTGGACCTCCCGTCTCCGTATAATTTGCAAAAACTACTCAAACAAACCCAGGAAACTCTTGCGGTCTGTCATGCTAACGTTGCTGAGAAACAATCCGGAAAAATAGACTACACCACGTCTCCAATGGCTGAAGCACCAACGATTTCAGTCCCAGCTCTAAATTATCAAGCGGAT</canonical>
            <polymorphic>ACTCGAGAGTCCAACTCAACCAGCTCCATCGACTCGTCCTAATGTTTTTATAGTTGCTCACGAGGATCCAGACCCACCAGTGTCAGCCACAGAAACTGTTCAATCTCCATTACTTCCAAATGGTCCAGACAATCAACAAGAACTCGAAGATCCAGTTCCAAACACTGAAATGGTTCATTATCAACAAACTCAAGGAGCTCAAAACCAAGAAGGGCTAGTGGAAGATGAGCAATATGAGATTCAAGAGGATGAGACGATTCCTTCCCATGGAGCACTACCAGATTGGGACTTCGTGTTCGCGCATATGCGGCAAAATCCAGAGGACCAAGCTCCAATATCACTACATGTTCAACCAACCAGATTTTTGAATCCGATACGAGAGTCTCACAATCAAAATGAGGGATTGGGCAAAGCGGAAGGAGTGGATGAAAAAGTGGTGAGTTGATACAATGAAATTGGAAAGGTTGGAAAATGCAATTTTCAGATTAGATTTTTCGAAKATTTCCATACGAGAAGAAAGATGACGCAGAAGATGAAGGAGGCAAAGTCAGGACTCGAGGGTCCAGCTCAACCAGTAACAGCTCAAGTTGGACAAAGTCCATGGCCAGAATCAGCTATTGAATCGGAAGCTACTCAACCTCTATTGCATGAACTCCATCAAGACATAAAGCAAGAAATCGGGGATCTAGCTCCACCAGTGCCAGTTGCTGAAGTGGTTCACAGTCATCAATCTCATGGAGCGCAAAACCTGGAAAACCTGATTGATGATGATCGTTATGAGACGGAAGAGGAAAAAACGATTCCTTCACACGGAGCATTGCTTCATTTGGACCTCCCGTCTCCGTATAATTTGCAAAAACTACTCAAACAAACCCAGGAAACTCTTGCGGTCTGTCATGCTAACGTTGCTGAGAAACAATCCGGAAAAATAGACTACACCACGTCTCCAATGGCTGAAGCACCAACGATTTCAGTCCCAGCTCTAAATTATCAAGCGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGTGGTGAGTTGATACAAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTCTTGCTTTATGTCTTGATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGTGGTGAGTTGATACAATGAAATTGGAAAGGTTGGAAAATGCAATTTTCAGATTAGATTTTTCGAAGATTTCCATACGAGAAGAAAGATGACGCAGAAGATGAAGGAGGCAAAGTCAGGACTCGAGGGTCCAGCTCAACCAGTAACAGCTCAAGTTGGACAAAGTCCATGGCCAGAATCAGCTATTGAATCGGAAGCTACTCAACCTCTATTGCATGAACTCCATCAAGACATAAAGCAAGAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGTGGTGAGTTGATACAATGAAATTGGAAAGGTTGGAAAATGCAATTTTCAGATTAGATTTTTCGAAKATTTCCATACGAGAAGAAAGATGACGCAGAAGATGAAGGAGGCAAAGTCAGGACTCGAGGGTCCAGCTCAACCAGTAACAGCTCAAGTTGGACAAAGTCCATGGCCAGAATCAGCTATTGAATCGGAAGCTACTCAACCTCTATTGCATGAACTCCATCAAGACATAAAGCAAGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8968</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>459185</contig_pos>
        <strand>+</strand>
        <context>TGGAAAATGC[A/T]ATTTTCAGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGAAAAAGTGGTGAGTTGATACAATGAAATTGGAAAGGTTGGAAAATGC</left_flank>
        <right_flank>ATTTTCAGATTAGATTTTTCGAAGATTTCCATACGAGAAGAAAGATGACG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAGAAGCTGTCGACTCCCCAAAACTCGAGAGTCCAACTCAACCAGCTCCATCGACTCGTCCTAATGTTTTTATAGTTGCTCACGAGGATCCAGACCCACCAGTGTCAGCCACAGAAACTGTTCAATCTCCATTACTTCCAAATGGTCCAGACAATCAACAAGAACTCGAAGATCCAGTTCCAAACACTGAAATGGTTCATTATCAACAAACTCAAGGAGCTCAAAACCAAGAAGGGCTAGTGGAAGATGAGCAATATGAGATTCAAGAGGATGAGACGATTCCTTCCCATGGAGCACTACCAGATTGGGACTTCGTGTTCGCGCATATGCGGCAAAATCCAGAGGACCAAGCTCCAATATCACTACATGTTCAACCAACCAGATTTTTGAATCCGATACGAGAGTCTCACAATCAAAATGAGGGATTGGGCAAAGCGGAAGGAGTGGATGAAAAAGTGGTGAGTTGATACAATGAAATTGGAAAGGTTGGAAAATGCAATTTTCAGATTAGATTTTTCGAAGATTTCCATACGAGAAGAAAGATGACGCAGAAGATGAAGGAGGCAAAGTCAGGACTCGAGGGTCCAGCTCAACCAGTAACAGCTCAAGTTGGACAAAGTCCATGGCCAGAATCAGCTATTGAATCGGAAGCTACTCAACCTCTATTGCATGAACTCCATCAAGACATAAAGCAAGAAATCGGGGATCTAGCTCCACCAGTGCCAGTTGCTGAAGTGGTTCACAGTCATCAATCTCATGGAGCGCAAAACCTGGAAAACCTGATTGATGATGATCGTTATGAGACGGAAGAGGAAAAAACGATTCCTTCACACGGAGCATTGCTTCATTTGGACCTCCCGTCTCCGTATAATTTGCAAAAACTACTCAAACAAACCCAGGAAACTCTTGCGGTCTGTCATGCTAACGTTGCTGAGAAACAATCCGGAAAAATAGACTACACCACGTCTCCAATGGCTGAAGCACCAACGATTTCAGTC</canonical>
            <polymorphic>TTCAGAAGCTGTCGACTCCCCAAAACTCGAGAGTCCAACTCAACCAGCTCCATCGACTCGTCCTAATGTTTTTATAGTTGCTCACGAGGATCCAGACCCACCAGTGTCAGCCACAGAAACTGTTCAATCTCCATTACTTCCAAATGGTCCAGACAATCAACAAGAACTCGAAGATCCAGTTCCAAACACTGAAATGGTTCATTATCAACAAACTCAAGGAGCTCAAAACCAAGAAGGGCTAGTGGAAGATGAGCAATATGAGATTCAAGAGGATGAGACGATTCCTTCCCATGGAGCACTACCAGATTGGGACTTCGTGTTCGCGCATATGCGGCAAAATCCAGAGGACCAAGCTCCAATATCACTACATGTTCAACCAACCAGATTTTTGAATCCGATACGAGAGTCTCACAATCAAAATGAGGGATTGGGCAAAGCGGAAGGAGTGGATGAAAAAGTGGTGAGTTGATACAATGAAATTGGAAAGGTTGGAAAATGCWATTTTCAGATTAGATTTTTCGAAGATTTCCATACGAGAAGAAAGATGACGCAGAAGATGAAGGAGGCAAAGTCAGGACTCGAGGGTCCAGCTCAACCAGTAACAGCTCAAGTTGGACAAAGTCCATGGCCAGAATCAGCTATTGAATCGGAAGCTACTCAACCTCTATTGCATGAACTCCATCAAGACATAAAGCAAGAAATCGGGGATCTAGCTCCACCAGTGCCAGTTGCTGAAGTGGTTCACAGTCATCAATCTCATGGAGCGCAAAACCTGGAAAACCTGATTGATGATGATCGTTATGAGACGGAAGAGGAAAAAACGATTCCTTCACACGGAGCATTGCTTCATTTGGACCTCCCGTCTCCGTATAATTTGCAAAAACTACTCAAACAAACCCAGGAAACTCTTGCGGTCTGTCATGCTAACGTTGCTGAGAAACAATCCGGAAAAATAGACTACACCACGTCTCCAATGGCTGAAGCACCAACGATTTCAGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>498 207 172 123</canonical_bands>
                <polymorphic_bands>670 207 123</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>477 372 129 22</canonical_bands>
                <polymorphic_bands>477 394 129</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATGAAAAAGTGGTGAGTTGAT</pcr_primer_p1>
		<pcr_primer_p2>GCTTTATGTCTTGATGGAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GATGAAAAAGTGGTGAGTTGATACAATGAAATTGGAAAGGTTGGAAAATGCAATTTTCAGATTAGATTTTTCGAAGATTTCCATACGAGAAGAAAGATGACGCAGAAGATGAAGGAGGCAAAGTCAGGACTCGAGGGTCCAGCTCAACCAGTAACAGCTCAAGTTGGACAAAGTCCATGGCCAGAATCAGCTATTGAATCGGAAGCTACTCAACCTCTATTGCATGAACTCCATCAAGACATAAAGC</canonical_amplicon>
		<polymorphic_amplicon>GATGAAAAAGTGGTGAGTTGATACAATGAAATTGGAAAGGTTGGAAAATGCWATTTTCAGATTAGATTTTTCGAAGATTTCCATACGAGAAGAAAGATGACGCAGAAGATGAAGGAGGCAAAGTCAGGACTCGAGGGTCCAGCTCAACCAGTAACAGCTCAAGTTGGACAAAGTCCATGGCCAGAATCAGCTATTGAATCGGAAGCTACTCAACCTCTATTGCATGAACTCCATCAAGACATAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8969</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>459097</contig_pos>
        <strand>+</strand>
        <context>GAGAGTCTCA[C/G]AATCAAAATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCACTACATGTTCAACCAACCAGATTTTTGAATCCGATACGAGAGTCTCA</left_flank>
        <right_flank>AATCAAAATGAGGGATTGGGCAAAGCGGAAGGAGTGGATGAAAAAGTGGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGCTAGTTTCAGATTTTCGAGTATTTCAATATGAGAAGAAAGATGAATGCGAAGACGGAAAAGTCAGGAGATACTTCAGAAGGTCCTTCAGAAGCTGTCGACTCCCCAAAACTCGAGAGTCCAACTCAACCAGCTCCATCGACTCGTCCTAATGTTTTTATAGTTGCTCACGAGGATCCAGACCCACCAGTGTCAGCCACAGAAACTGTTCAATCTCCATTACTTCCAAATGGTCCAGACAATCAACAAGAACTCGAAGATCCAGTTCCAAACACTGAAATGGTTCATTATCAACAAACTCAAGGAGCTCAAAACCAAGAAGGGCTAGTGGAAGATGAGCAATATGAGATTCAAGAGGATGAGACGATTCCTTCCCATGGAGCACTACCAGATTGGGACTTCGTGTTCGCGCATATGCGGCAAAATCCAGAGGACCAAGCTCCAATATCACTACATGTTCAACCAACCAGATTTTTGAATCCGATACGAGAGTCTCACAATCAAAATGAGGGATTGGGCAAAGCGGAAGGAGTGGATGAAAAAGTGGTGAGTTGATACAATGAAATTGGAAAGGTTGGAAAATGCAATTTTCAGATTAGATTTTTCGAAGATTTCCATACGAGAAGAAAGATGACGCAGAAGATGAAGGAGGCAAAGTCAGGACTCGAGGGTCCAGCTCAACCAGTAACAGCTCAAGTTGGACAAAGTCCATGGCCAGAATCAGCTATTGAATCGGAAGCTACTCAACCTCTATTGCATGAACTCCATCAAGACATAAAGCAAGAAATCGGGGATCTAGCTCCACCAGTGCCAGTTGCTGAAGTGGTTCACAGTCATCAATCTCATGGAGCGCAAAACCTGGAAAACCTGATTGATGATGATCGTTATGAGACGGAAGAGGAAAAAACGATTCCTTCACACGGAGCATTGCTTCATTTGGACCTCCCGTCTCCGTATAATTTGCAAAAACTACTCAAACAAACCCAGGAAACTCTTGC</canonical>
            <polymorphic>GATGCTAGTTTCAGATTTTCGAGTATTTCAATATGAGAAGAAAGATGAATGCGAAGACGGAAAAGTCAGGAGATACTTCAGAAGGTCCTTCAGAAGCTGTCGACTCCCCAAAACTCGAGAGTCCAACTCAACCAGCTCCATCGACTCGTCCTAATGTTTTTATAGTTGCTCACGAGGATCCAGACCCACCAGTGTCAGCCACAGAAACTGTTCAATCTCCATTACTTCCAAATGGTCCAGACAATCAACAAGAACTCGAAGATCCAGTTCCAAACACTGAAATGGTTCATTATCAACAAACTCAAGGAGCTCAAAACCAAGAAGGGCTAGTGGAAGATGAGCAATATGAGATTCAAGAGGATGAGACGATTCCTTCCCATGGAGCACTACCAGATTGGGACTTCGTGTTCGCGCATATGCGGCAAAATCCAGAGGACCAAGCTCCAATATCACTACATGTTCAACCAACCAGATTTTTGAATCCGATACGAGAGTCTCASAATCAAAATGAGGGATTGGGCAAAGCGGAAGGAGTGGATGAAAAAGTGGTGAGTTGATACAATGAAATTGGAAAGGTTGGAAAATGCAATTTTCAGATTAGATTTTTCGAAGATTTCCATACGAGAAGAAAGATGACGCAGAAGATGAAGGAGGCAAAGTCAGGACTCGAGGGTCCAGCTCAACCAGTAACAGCTCAAGTTGGACAAAGTCCATGGCCAGAATCAGCTATTGAATCGGAAGCTACTCAACCTCTATTGCATGAACTCCATCAAGACATAAAGCAAGAAATCGGGGATCTAGCTCCACCAGTGCCAGTTGCTGAAGTGGTTCACAGTCATCAATCTCATGGAGCGCAAAACCTGGAAAACCTGATTGATGATGATCGTTATGAGACGGAAGAGGAAAAAACGATTCCTTCACACGGAGCATTGCTTCATTTGGACCTCCCGTCTCCGTATAATTTGCAAAAACTACTCAAACAAACCCAGGAAACTCTTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>255 172 88 78 75 56 54 47 45 37 21 16 15 12 7 6 6 5 3 2</canonical_bands>
                <polymorphic_bands>255 172 88 84 78 75 56 54 45 21 16 15 12 7 6 6 5 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGTGGAAGATGAGCAATATGA</pcr_primer_p1>
		<pcr_primer_p2>CTTTCCAATTTCATTGTATCAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTAGTGGAAGATGAGCAATATGAGATTCAAGAGGATGAGACGATTCCTTCCCATGGAGCACTACCAGATTGGGACTTCGTGTTCGCGCATATGCGGCAAAATCCAGAGGACCAAGCTCCAATATCACTACATGTTCAACCAACCAGATTTTTGAATCCGATACGAGAGTCTCACAATCAAAATGAGGGATTGGGCAAAGCGGAAGGAGTGGATGAAAAAGTGGTGAGTTGATACAATGAAATTGGAAAG</canonical_amplicon>
		<polymorphic_amplicon>CTAGTGGAAGATGAGCAATATGAGATTCAAGAGGATGAGACGATTCCTTCCCATGGAGCACTACCAGATTGGGACTTCGTGTTCGCGCATATGCGGCAAAATCCAGAGGACCAAGCTCCAATATCACTACATGTTCAACCAACCAGATTTTTGAATCCGATACGAGAGTCTCASAATCAAAATGAGGGATTGGGCAAAGCGGAAGGAGTGGATGAAAAAGTGGTGAGTTGATACAATGAAATTGGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8970</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>459082</contig_pos>
        <strand>+</strand>
        <context>TTTTRAATCC[A/G]ATACGAGAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACCAAGCTCCAATATCACTACATGTTCAACCAACCAGATTTTTGAATCC</left_flank>
        <right_flank>ATACGAGAGTCTCACAATCAAAATGAGGGATTGGGCAAAGCGGAAGGAGT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGGAAGGGTTGAAAGATGCTAGTTTCAGATTTTCGAGTATTTCAATATGAGAAGAAAGATGAATGCGAAGACGGAAAAGTCAGGAGATACTTCAGAAGGTCCTTCAGAAGCTGTCGACTCCCCAAAACTCGAGAGTCCAACTCAACCAGCTCCATCGACTCGTCCTAATGTTTTTATAGTTGCTCACGAGGATCCAGACCCACCAGTGTCAGCCACAGAAACTGTTCAATCTCCATTACTTCCAAATGGTCCAGACAATCAACAAGAACTCGAAGATCCAGTTCCAAACACTGAAATGGTTCATTATCAACAAACTCAAGGAGCTCAAAACCAAGAAGGGCTAGTGGAAGATGAGCAATATGAGATTCAAGAGGATGAGACGATTCCTTCCCATGGAGCACTACCAGATTGGGACTTCGTGTTCGCGCATATGCGGCAAAATCCAGAGGACCAAGCTCCAATATCACTACATGTTCAACCAACCAGATTTTTGAATCCGATACGAGAGTCTCACAATCAAAATGAGGGATTGGGCAAAGCGGAAGGAGTGGATGAAAAAGTGGTGAGTTGATACAATGAAATTGGAAAGGTTGGAAAATGCAATTTTCAGATTAGATTTTTCGAAGATTTCCATACGAGAAGAAAGATGACGCAGAAGATGAAGGAGGCAAAGTCAGGACTCGAGGGTCCAGCTCAACCAGTAACAGCTCAAGTTGGACAAAGTCCATGGCCAGAATCAGCTATTGAATCGGAAGCTACTCAACCTCTATTGCATGAACTCCATCAAGACATAAAGCAAGAAATCGGGGATCTAGCTCCACCAGTGCCAGTTGCTGAAGTGGTTCACAGTCATCAATCTCATGGAGCGCAAAACCTGGAAAACCTGATTGATGATGATCGTTATGAGACGGAAGAGGAAAAAACGATTCCTTCACACGGAGCATTGCTTCATTTGGACCTCCCGTCTCCGTATAATTTGCAAAAACTACTCAAACAAAC</canonical>
            <polymorphic>TCGGAAGGGTTGAAAGATGCTAGTTTCAGATTTTCGAGTATTTCAATATGAGAAGAAAGATGAATGCGAAGACGGAAAAGTCAGGAGATACTTCAGAAGGTCCTTCAGAAGCTGTCGACTCCCCAAAACTCGAGAGTCCAACTCAACCAGCTCCATCGACTCGTCCTAATGTTTTTATAGTTGCTCACGAGGATCCAGACCCACCAGTGTCAGCCACAGAAACTGTTCAATCTCCATTACTTCCAAATGGTCCAGACAATCAACAAGAACTCGAAGATCCAGTTCCAAACACTGAAATGGTTCATTATCAACAAACTCAAGGAGCTCAAAACCAAGAAGGGCTAGTGGAAGATGAGCAATATGAGATTCAAGAGGATGAGACGATTCCTTCCCATGGAGCACTACCAGATTGGGACTTCGTGTTCGCGCATATGCGGCAAAATCCAGAGGACCAAGCTCCAATATCACTACATGTTCAACCAACCAGATTTTTGAATCCRATACGAGAGTCTCACAATCAAAATGAGGGATTGGGCAAAGCGGAAGGAGTGGATGAAAAAGTGGTGAGTTGATACAATGAAATTGGAAAGGTTGGAAAATGCAATTTTCAGATTAGATTTTTCGAAGATTTCCATACGAGAAGAAAGATGACGCAGAAGATGAAGGAGGCAAAGTCAGGACTCGAGGGTCCAGCTCAACCAGTAACAGCTCAAGTTGGACAAAGTCCATGGCCAGAATCAGCTATTGAATCGGAAGCTACTCAACCTCTATTGCATGAACTCCATCAAGACATAAAGCAAGAAATCGGGGATCTAGCTCCACCAGTGCCAGTTGCTGAAGTGGTTCACAGTCATCAATCTCATGGAGCGCAAAACCTGGAAAACCTGATTGATGATGATCGTTATGAGACGGAAGAGGAAAAAACGATTCCTTCACACGGAGCATTGCTTCATTTGGACCTCCCGTCTCCGTATAATTTGCAAAAACTACTCAAACAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>392 248 142 111 67 25 12 3</canonical_bands>
                <polymorphic_bands>503 248 142 67 25 12 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGTGGAAGATGAGCAATATGA</pcr_primer_p1>
		<pcr_primer_p2>CTTTCCAATTTCATTGTATCAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTAGTGGAAGATGAGCAATATGAGATTCAAGAGGATGAGACGATTCCTTCCCATGGAGCACTACCAGATTGGGACTTCGTGTTCGCGCATATGCGGCAAAATCCAGAGGACCAAGCTCCAATATCACTACATGTTCAACCAACCAGATTTTTGAATCCGATACGAGAGTCTCACAATCAAAATGAGGGATTGGGCAAAGCGGAAGGAGTGGATGAAAAAGTGGTGAGTTGATACAATGAAATTGGAAAG</canonical_amplicon>
		<polymorphic_amplicon>CTAGTGGAAGATGAGCAATATGAGATTCAAGAGGATGAGACGATTCCTTCCCATGGAGCACTACCAGATTGGGACTTCGTGTTCGCGCATATGCGGCAAAATCCAGAGGACCAAGCTCCAATATCACTACATGTTCAACCAACCAGATTTTTGAATCCRATACGAGAGTCTCACAATCAAAATGAGGGATTGGGCAAAGCGGAAGGAGTGGATGAAAAAGTGGTGAGTTGATACAATGAAATTGGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8971</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>459076</contig_pos>
        <strand>+</strand>
        <context>CCAGATTTTT[A/G]AATCCRATAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAGAGGACCAAGCTCCAATATCACTACATGTTCAACCAACCAGATTTTT</left_flank>
        <right_flank>AATCCGATACGAGAGTCTCACAATCAAAATGAGGGATTGGGCAAAGCGGA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAAATCGGAAGGGTTGAAAGATGCTAGTTTCAGATTTTCGAGTATTTCAATATGAGAAGAAAGATGAATGCGAAGACGGAAAAGTCAGGAGATACTTCAGAAGGTCCTTCAGAAGCTGTCGACTCCCCAAAACTCGAGAGTCCAACTCAACCAGCTCCATCGACTCGTCCTAATGTTTTTATAGTTGCTCACGAGGATCCAGACCCACCAGTGTCAGCCACAGAAACTGTTCAATCTCCATTACTTCCAAATGGTCCAGACAATCAACAAGAACTCGAAGATCCAGTTCCAAACACTGAAATGGTTCATTATCAACAAACTCAAGGAGCTCAAAACCAAGAAGGGCTAGTGGAAGATGAGCAATATGAGATTCAAGAGGATGAGACGATTCCTTCCCATGGAGCACTACCAGATTGGGACTTCGTGTTCGCGCATATGCGGCAAAATCCAGAGGACCAAGCTCCAATATCACTACATGTTCAACCAACCAGATTTTTGAATCCGATACGAGAGTCTCACAATCAAAATGAGGGATTGGGCAAAGCGGAAGGAGTGGATGAAAAAGTGGTGAGTTGATACAATGAAATTGGAAAGGTTGGAAAATGCAATTTTCAGATTAGATTTTTCGAAGATTTCCATACGAGAAGAAAGATGACGCAGAAGATGAAGGAGGCAAAGTCAGGACTCGAGGGTCCAGCTCAACCAGTAACAGCTCAAGTTGGACAAAGTCCATGGCCAGAATCAGCTATTGAATCGGAAGCTACTCAACCTCTATTGCATGAACTCCATCAAGACATAAAGCAAGAAATCGGGGATCTAGCTCCACCAGTGCCAGTTGCTGAAGTGGTTCACAGTCATCAATCTCATGGAGCGCAAAACCTGGAAAACCTGATTGATGATGATCGTTATGAGACGGAAGAGGAAAAAACGATTCCTTCACACGGAGCATTGCTTCATTTGGACCTCCCGTCTCCGTATAATTTGCAAAAACTACTCAA</canonical>
            <polymorphic>ATGAAATCGGAAGGGTTGAAAGATGCTAGTTTCAGATTTTCGAGTATTTCAATATGAGAAGAAAGATGAATGCGAAGACGGAAAAGTCAGGAGATACTTCAGAAGGTCCTTCAGAAGCTGTCGACTCCCCAAAACTCGAGAGTCCAACTCAACCAGCTCCATCGACTCGTCCTAATGTTTTTATAGTTGCTCACGAGGATCCAGACCCACCAGTGTCAGCCACAGAAACTGTTCAATCTCCATTACTTCCAAATGGTCCAGACAATCAACAAGAACTCGAAGATCCAGTTCCAAACACTGAAATGGTTCATTATCAACAAACTCAAGGAGCTCAAAACCAAGAAGGGCTAGTGGAAGATGAGCAATATGAGATTCAAGAGGATGAGACGATTCCTTCCCATGGAGCACTACCAGATTGGGACTTCGTGTTCGCGCATATGCGGCAAAATCCAGAGGACCAAGCTCCAATATCACTACATGTTCAACCAACCAGATTTTTRAATCCGATACGAGAGTCTCACAATCAAAATGAGGGATTGGGCAAAGCGGAAGGAGTGGATGAAAAAGTGGTGAGTTGATACAATGAAATTGGAAAGGTTGGAAAATGCAATTTTCAGATTAGATTTTTCGAAGATTTCCATACGAGAAGAAAGATGACGCAGAAGATGAAGGAGGCAAAGTCAGGACTCGAGGGTCCAGCTCAACCAGTAACAGCTCAAGTTGGACAAAGTCCATGGCCAGAATCAGCTATTGAATCGGAAGCTACTCAACCTCTATTGCATGAACTCCATCAAGACATAAAGCAAGAAATCGGGGATCTAGCTCCACCAGTGCCAGTTGCTGAAGTGGTTCACAGTCATCAATCTCATGGAGCGCAAAACCTGGAAAACCTGATTGATGATGATCGTTATGAGACGGAAGAGGAAAAAACGATTCCTTCACACGGAGCATTGCTTCATTTGGACCTCCCGTCTCCGTATAATTTGCAAAAACTACTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>207 179 172 123 111 68 56 24 18 17 13 12</canonical_bands>
                <polymorphic_bands>207 179 172 124 123 68 56 24 18 17 12</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>371 241 179 111 68 18 12</canonical_bands>
                <polymorphic_bands>371 352 179 68 18 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGTGGAAGATGAGCAATATGA</pcr_primer_p1>
		<pcr_primer_p2>CTTTCCAATTTCATTGTATCAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTAGTGGAAGATGAGCAATATGAGATTCAAGAGGATGAGACGATTCCTTCCCATGGAGCACTACCAGATTGGGACTTCGTGTTCGCGCATATGCGGCAAAATCCAGAGGACCAAGCTCCAATATCACTACATGTTCAACCAACCAGATTTTTGAATCCGATACGAGAGTCTCACAATCAAAATGAGGGATTGGGCAAAGCGGAAGGAGTGGATGAAAAAGTGGTGAGTTGATACAATGAAATTGGAAAG</canonical_amplicon>
		<polymorphic_amplicon>CTAGTGGAAGATGAGCAATATGAGATTCAAGAGGATGAGACGATTCCTTCCCATGGAGCACTACCAGATTGGGACTTCGTGTTCGCGCATATGCGGCAAAATCCAGAGGACCAAGCTCCAATATCACTACATGTTCAACCAACCAGATTTTTRAATCCGATACGAGAGTCTCACAATCAAAATGAGGGATTGGGCAAAGCGGAAGGAGTGGATGAAAAAGTGGTGAGTTGATACAATGAAATTGGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8972</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>459025</contig_pos>
        <strand></strand>
        <context>TGCGGCAAAA[T/G]CCAGAGGACC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CATGGAGCACTACCAGATTGGGACTTCGTGTTCGCGCATATGCGGCAAAA</left_flank>
        <right_flank>CCAGAGGACCAAGCTCCAATATCACTACATGTTCAACCAACCAGATTTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAGAGGTTCGCAGAGTCAGGACTGGAAGAGAATGTTGTGAGTTGATAAAATGAAATCGGAAGGGTTGAAAGATGCTAGTTTCAGATTTTCGAGTATTTCAATATGAGAAGAAAGATGAATGCGAAGACGGAAAAGTCAGGAGATACTTCAGAAGGTCCTTCAGAAGCTGTCGACTCCCCAAAACTCGAGAGTCCAACTCAACCAGCTCCATCGACTCGTCCTAATGTTTTTATAGTTGCTCACGAGGATCCAGACCCACCAGTGTCAGCCACAGAAACTGTTCAATCTCCATTACTTCCAAATGGTCCAGACAATCAACAAGAACTCGAAGATCCAGTTCCAAACACTGAAATGGTTCATTATCAACAAACTCAAGGAGCTCAAAACCAAGAAGGGCTAGTGGAAGATGAGCAATATGAGATTCAAGAGGATGAGACGATTCCTTCCCATGGAGCACTACCAGATTGGGACTTCGTGTTCGCGCATATGCGGCAAAATCCAGAGGACCAAGCTCCAATATCACTACATGTTCAACCAACCAGATTTTTGAATCCGATACGAGAGTCTCACAATCAAAATGAGGGATTGGGCAAAGCGGAAGGAGTGGATGAAAAAGTGGTGAGTTGATACAATGAAATTGGAAAGGTTGGAAAATGCAATTTTCAGATTAGATTTTTCGAAGATTTCCATACGAGAAGAAAGATGACGCAGAAGATGAAGGAGGCAAAGTCAGGACTCGAGGGTCCAGCTCAACCAGTAACAGCTCAAGTTGGACAAAGTCCATGGCCAGAATCAGCTATTGAATCGGAAGCTACTCAACCTCTATTGCATGAACTCCATCAAGACATAAAGCAAGAAATCGGGGATCTAGCTCCACCAGTGCCAGTTGCTGAAGTGGTTCACAGTCATCAATCTCATGGAGCGCAAAACCTGGAAAACCTGATTGATGATGATCGTTATGAGACGGAAGAGGAAAAAACGATTCCTTCACACGGAGC</canonical>
            <polymorphic>TTGAGAGGTTCGCAGAGTCAGGACTGGAAGAGAATGTTGTGAGTTGATAAAATGAAATCGGAAGGGTTGAAAGATGCTAGTTTCAGATTTTCGAGTATTTCAATATGAGAAGAAAGATGAATGCGAAGACGGAAAAGTCAGGAGATACTTCAGAAGGTCCTTCAGAAGCTGTCGACTCCCCAAAACTCGAGAGTCCAACTCAACCAGCTCCATCGACTCGTCCTAATGTTTTTATAGTTGCTCACGAGGATCCAGACCCACCAGTGTCAGCCACAGAAACTGTTCAATCTCCATTACTTCCAAATGGTCCAGACAATCAACAAGAACTCGAAGATCCAGTTCCAAACACTGAAATGGTTCATTATCAACAAACTCAAGGAGCTCAAAACCAAGAAGGGCTAGTGGAAGATGAGCAATATGAGATTCAAGAGGATGAGACGATTCCTTCCCATGGAGCACTACCAGATTGGGACTTCGTGTTCGCGCATATGCGGCAAAAKCCAGAGGACCAAGCTCCAATATCACTACATGTTCAACCAACCAGATTTTTGAATCCGATACGAGAGTCTCACAATCAAAATGAGGGATTGGGCAAAGCGGAAGGAGTGGATGAAAAAGTGGTGAGTTGATACAATGAAATTGGAAAGGTTGGAAAATGCAATTTTCAGATTAGATTTTTCGAAGATTTCCATACGAGAAGAAAGATGACGCAGAAGATGAAGGAGGCAAAGTCAGGACTCGAGGGTCCAGCTCAACCAGTAACAGCTCAAGTTGGACAAAGTCCATGGCCAGAATCAGCTATTGAATCGGAAGCTACTCAACCTCTATTGCATGAACTCCATCAAGACATAAAGCAAGAAATCGGGGATCTAGCTCCACCAGTGCCAGTTGCTGAAGTGGTTCACAGTCATCAATCTCATGGAGCGCAAAACCTGGAAAACCTGATTGATGATGATCGTTATGAGACGGAAGAGGAAAAAACGATTCCTTCACACGGAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>232 157 120 117 110 75 57 55 49 19 9</canonical_bands>
                <polymorphic_bands>307 157 120 117 110 57 55 49 19 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGTGGAAGATGAGCAATATGA</pcr_primer_p1>
		<pcr_primer_p2>CTTTCCAATTTCATTGTATCAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTAGTGGAAGATGAGCAATATGAGATTCAAGAGGATGAGACGATTCCTTCCCATGGAGCACTACCAGATTGGGACTTCGTGTTCGCGCATATGCGGCAAAATCCAGAGGACCAAGCTCCAATATCACTACATGTTCAACCAACCAGATTTTTGAATCCGATACGAGAGTCTCACAATCAAAATGAGGGATTGGGCAAAGCGGAAGGAGTGGATGAAAAAGTGGTGAGTTGATACAATGAAATTGGAAAG</canonical_amplicon>
		<polymorphic_amplicon>CTAGTGGAAGATGAGCAATATGAGATTCAAGAGGATGAGACGATTCCTTCCCATGGAGCACTACCAGATTGGGACTTCGTGTTCGCGCATATGCGGCAAAAKCCAGAGGACCAAGCTCCAATATCACTACATGTTCAACCAACCAGATTTTTGAATCCGATACGAGAGTCTCACAATCAAAATGAGGGATTGGGCAAAGCGGAAGGAGTGGATGAAAAAGTGGTGAGTTGATACAATGAAATTGGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8973</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>43763</contig_pos>
        <strand>+</strand>
        <context>AAGGTTTCGG[A/G]TCTTTCCTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTTAGCGTTTATCAGAGTTTTATAGGTAGATTAAAATCAAGGTTTCGG</left_flank>
        <right_flank>TCTTTCCTATTGATACAGTAAGCAGAAAAATTCAAATACCTGCCCATCTC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTGAAGGGTTTTCAGAAAATACGACAAGAATGCGTTGGATGAGGCCGTCAGAAGTGTTCGTCGTGGGGAGATGACCGTGCATCGTGCCGGAAGCTTTTTTGGAGTCCCTCACTCTACGCTTGAGTATAAGGTGAGGATGGAGAAGTAAATACCCTACAGCCTGTAATAGAAGCTCACCCAAGTTTGAGAGAAAAAACGTTGTTGATATTCAAAGAAAGATTTTCTGAGAAAACCAGTTTTAATACTTTCAGAAAGCTAGAAAAATTGGATTACGGTATTTCCATCAATCTATTCACTTCGAGCTTAATTATCTCGATTCTTGTGAATGACATCAGAAATGTGACAACTGATAAAATGTTGGTGAAATTTTGACAAGTATTTTATCAGTTGTCAATTTTTCGATATCTTTCGAAGCAACCAGTAAACTGAGCTCTAACTGCACATATAAAGTTAGCGTTTATCAGAGTTTTATAGGTAGATTAAAATCAAGGTTTCGGATCTTTCCTATTGATACAGTAAGCAGAAAAATTCAAATACCTGCCCATCTCAGTCAAATCGACGATTTGCAGGTAAAAGAAAGAAATCTAATGCGTAAAAAGAAGGACTCTCTACTCTTCAATAATGACTCGTCTACCAGCGAAGAAGGAACAAATTTTATTCTATCCGCGATTTCTCAACAATCCAACTCATCTTCTCATACCTCCACCCCCATTCAGTTCCCGATATCTCTTGTTTAGATTCTGACACGCTAGTTTCTGAAACATTAATTGTAATTAATTCTCACTTTCCCCTCTCCATTTTTTGGTTCTTTAAGTTCACCACACTTGCATTTCATTTTCTCATTAATTCTAAATTTGTAAAATTAACTTTACAAATTACATAAAATGTACTCGGTCCATATTTTTTTTTCTTAATAAAGGTTTTAATGGTTTTATATATATTATATAGTGGAACGCATAAACTTGGACTCAACTTACACATAATTGGAAAACCAAATG</canonical>
            <polymorphic>AAGTGAAGGGTTTTCAGAAAATACGACAAGAATGCGTTGGATGAGGCCGTCAGAAGTGTTCGTCGTGGGGAGATGACCGTGCATCGTGCCGGAAGCTTTTTTGGAGTCCCTCACTCTACGCTTGAGTATAAGGTGAGGATGGAGAAGTAAATACCCTACAGCCTGTAATAGAAGCTCACCCAAGTTTGAGAGAAAAAACGTTGTTGATATTCAAAGAAAGATTTTCTGAGAAAACCAGTTTTAATACTTTCAGAAAGCTAGAAAAATTGGATTACGGTATTTCCATCAATCTATTCACTTCGAGCTTAATTATCTCGATTCTTGTGAATGACATCAGAAATGTGACAACTGATAAAATGTTGGTGAAATTTTGACAAGTATTTTATCAGTTGTCAATTTTTCGATATCTTTCGAAGCAACCAGTAAACTGAGCTCTAACTGCACATATAAAGTTAGCGTTTATCAGAGTTTTATAGGTAGATTAAAATCAAGGTTTCGGRTCTTTCCTATTGATACAGTAAGCAGAAAAATTCAAATACCTGCCCATCTCAGTCAAATCGACGATTTGCAGGTAAAAGAAAGAAATCTAATGCGTAAAAAGAAGGACTCTCTACTCTTCAATAATGACTCGTCTACCAGCGAAGAAGGAACAAATTTTATTCTATCCGCGATTTCTCAACAATCCAACTCATCTTCTCATACCTCCACCCCCATTCAGTTCCCGATATCTCTTGTTTAGATTCTGACACGCTAGTTTCTGAAACATTAATTGTAATTAATTCTCACTTTCCCCTCTCCATTTTTTGGTTCTTTAAGTTCACCACACTTGCATTTCATTTTCTCATTAATTCTAAATTTGTAAAATTAACTTTACAAATTACATAAAATGTACTCGGTCCATATTTTTTTTTCTTAATAAAGGTTTTAATGGTTTTATATATATTATATAGTGGAACGCATAAACTTGGACTCAACTTACACATAATTGGAAAACCAAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>246 241 175 129 84 36 33 25 16 15</canonical_bands>
                <polymorphic_bands>279 241 175 129 84 36 25 16 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATATAAAGTTAGCGTTTATCAGAG</pcr_primer_p1>
		<pcr_primer_p2>ATGAGTTGGATTGTTGAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATATAAAGTTAGCGTTTATCAGAGTTTTATAGGTAGATTAAAATCAAGGTTTCGGATCTTTCCTATTGATACAGTAAGCAGAAAAATTCAAATACCTGCCCATCTCAGTCAAATCGACGATTTGCAGGTAAAAGAAAGAAATCTAATGCGTAAAAAGAAGGACTCTCTACTCTTCAATAATGACTCGTCTACCAGCGAAGAAGGAACAAATTTTATTCTATCCGCGATTTCTCAACAATCCAACTCAT</canonical_amplicon>
		<polymorphic_amplicon>ACATATAAAGTTAGCGTTTATCAGAGTTTTATAGGTAGATTAAAATCAAGGTTTCGGRTCTTTCCTATTGATACAGTAAGCAGAAAAATTCAAATACCTGCCCATCTCAGTCAAATCGACGATTTGCAGGTAAAAGAAAGAAATCTAATGCGTAAAAAGAAGGACTCTCTACTCTTCAATAATGACTCGTCTACCAGCGAAGAAGGAACAAATTTTATTCTATCCGCGATTTCTCAACAATCCAACTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8996</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>130526</contig_pos>
        <strand></strand>
        <context>AAATAGTTTT[C/T]AGTRAACTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCCAGAAAACGATATTTTAGAAAAAAAAACTATTGCAAAATAGTTTT</left_flank>
        <right_flank>AGTGAACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAAT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTACTTAAAGGCACATGCTACTTGGATTCTTTTTTTCTGGAGTAGAAACATTCAGAAAGTATACTCGATTTTTGAGCTTGACTGATAGTTCAAATTTTGTAAAAGAACTTTGATAAATTAGAAAATGCGAATGGTCGATATCCAGAGATGACAGTTTCGAAATGAGATATTGTGATTTTTAATATAAATAGAGGGAAAGTCAACGTTCTCTTCTGAAAAATGGGAATTTCATGTAGTTAGGAGAAACTGAAATTTCTATAGAGAAAGGGCTTTTCGATTTTTGGGCTTGATTGATAGGTTTCAAAATTTTGATCGAAATTTAGCAAAAAATCGATATCTGAAGCTTTGAAATGTCCAGATTTACGGTGTTTCAACAACATTCGAATTGTTCATTGGAGCGAAAAAAAAACCTTGAATTTCGAAAACTAAAAACTTCAAAAACTGAATTTTCCAGAAAACGATATTTTAGAAAAAAAAACTATTGCAAAATAGTTTTCAGTGAACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACACTGTACTATAGTAAACTAGTTATGACGTAAGCAATTTGAAACTTTTCTGACTGAAAAAAAAACAAAAAAGTGAATAGTCCTATTAATAAGATAAGGAAGTACAATCGATTGTAACAATGATGGGTGTTTTTGAATTTTCTTTACGACGATTAATGAGGTGAGGAGAGTCTCAAAGTTGAAACTTGGTTGGTCACCAGTTCTATTTTTTTGTTAGGGCCAACGTCTTTTTTTCTCTACCAACAGAAAAAAAAACGACAGAATTCGTCAGTATGTCTCTTTTTCCATAGTTCTTTTTGGCTGTTTTTCAGCCCCGACATGGGGCCCCGGGGGCTATAATCGCTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTTTTTTCTTCAGTCAGTTTTTTTGCGACC</canonical>
            <polymorphic>TATTTACTTAAAGGCACATGCTACTTGGATTCTTTTTTTCTGGAGTAGAAACATTCAGAAAGTATACTCGATTTTTGAGCTTGACTGATAGTTCAAATTTTGTAAAAGAACTTTGATAAATTAGAAAATGCGAATGGTCGATATCCAGAGATGACAGTTTCGAAATGAGATATTGTGATTTTTAATATAAATAGAGGGAAAGTCAACGTTCTCTTCTGAAAAATGGGAATTTCATGTAGTTAGGAGAAACTGAAATTTCTATAGAGAAAGGGCTTTTCGATTTTTGGGCTTGATTGATAGGTTTCAAAATTTTGATCGAAATTTAGCAAAAAATCGATATCTGAAGCTTTGAAATGTCCAGATTTACGGTGTTTCAACAACATTCGAATTGTTCATTGGAGCGAAAAAAAAACCTTGAATTTCGAAAACTAAAAACTTCAAAAACTGAATTTTCCAGAAAACGATATTTTAGAAAAAAAAACTATTGCAAAATAGTTTTYAGTGAACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACACTGTACTATAGTAAACTAGTTATGACGTAAGCAATTTGAAACTTTTCTGACTGAAAAAAAAACAAAAAAGTGAATAGTCCTATTAATAAGATAAGGAAGTACAATCGATTGTAACAATGATGGGTGTTTTTGAATTTTCTTTACGACGATTAATGAGGTGAGGAGAGTCTCAAAGTTGAAACTTGGTTGGTCACCAGTTCTATTTTTTTGTTAGGGCCAACGTCTTTTTTTCTCTACCAACAGAAAAAAAAACGACAGAATTCGTCAGTATGTCTCTTTTTCCATAGTTCTTTTTGGCTGTTTTTCAGCCCCGACATGGGGCCCCGGGGGCTATAATCGCTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTTTTTTCTTCAGTCAGTTTTTTTGCGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAATGTCCAGATTTACG</pcr_primer_p1>
		<pcr_primer_p2>GTGTCGTTAGAGTATATTTCCATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAATGTCCAGATTTACGGTGTTTCAACAACATTCGAATTGTTCATTGGAGCGAAAAAAAAACCTTGAATTTCGAAAACTAAAAACTTCAAAAACTGAATTTTCCAGAAAACGATATTTTAGAAAAAAAAACTATTGCAAAATAGTTTTCAGTGAACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACAC</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAATGTCCAGATTTACGGTGTTTCAACAACATTCGAATTGTTCATTGGAGCGAAAAAAAAACCTTGAATTTCGAAAACTAAAAACTTCAAAAACTGAATTTTCCAGAAAACGATATTTTAGAAAAAAAAACTATTGCAAAATAGTTTTYAGTGAACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8997</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>130530</contig_pos>
        <strand></strand>
        <context>AGTTTTYAGT[G/A]AACTGGATTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CCAGAAAACGATATTTTAGAAAAAAAAACTATTGCAAAATAGTTTTCAGT</left_flank>
        <right_flank>AACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTTAAAGGCACATGCTACTTGGATTCTTTTTTTCTGGAGTAGAAACATTCAGAAAGTATACTCGATTTTTGAGCTTGACTGATAGTTCAAATTTTGTAAAAGAACTTTGATAAATTAGAAAATGCGAATGGTCGATATCCAGAGATGACAGTTTCGAAATGAGATATTGTGATTTTTAATATAAATAGAGGGAAAGTCAACGTTCTCTTCTGAAAAATGGGAATTTCATGTAGTTAGGAGAAACTGAAATTTCTATAGAGAAAGGGCTTTTCGATTTTTGGGCTTGATTGATAGGTTTCAAAATTTTGATCGAAATTTAGCAAAAAATCGATATCTGAAGCTTTGAAATGTCCAGATTTACGGTGTTTCAACAACATTCGAATTGTTCATTGGAGCGAAAAAAAAACCTTGAATTTCGAAAACTAAAAACTTCAAAAACTGAATTTTCCAGAAAACGATATTTTAGAAAAAAAAACTATTGCAAAATAGTTTTCAGTGAACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACACTGTACTATAGTAAACTAGTTATGACGTAAGCAATTTGAAACTTTTCTGACTGAAAAAAAAACAAAAAAGTGAATAGTCCTATTAATAAGATAAGGAAGTACAATCGATTGTAACAATGATGGGTGTTTTTGAATTTTCTTTACGACGATTAATGAGGTGAGGAGAGTCTCAAAGTTGAAACTTGGTTGGTCACCAGTTCTATTTTTTTGTTAGGGCCAACGTCTTTTTTTCTCTACCAACAGAAAAAAAAACGACAGAATTCGTCAGTATGTCTCTTTTTCCATAGTTCTTTTTGGCTGTTTTTCAGCCCCGACATGGGGCCCCGGGGGCTATAATCGCTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTTTTTTCTTCAGTCAGTTTTTTTGCGACCCTGT</canonical>
            <polymorphic>TACTTAAAGGCACATGCTACTTGGATTCTTTTTTTCTGGAGTAGAAACATTCAGAAAGTATACTCGATTTTTGAGCTTGACTGATAGTTCAAATTTTGTAAAAGAACTTTGATAAATTAGAAAATGCGAATGGTCGATATCCAGAGATGACAGTTTCGAAATGAGATATTGTGATTTTTAATATAAATAGAGGGAAAGTCAACGTTCTCTTCTGAAAAATGGGAATTTCATGTAGTTAGGAGAAACTGAAATTTCTATAGAGAAAGGGCTTTTCGATTTTTGGGCTTGATTGATAGGTTTCAAAATTTTGATCGAAATTTAGCAAAAAATCGATATCTGAAGCTTTGAAATGTCCAGATTTACGGTGTTTCAACAACATTCGAATTGTTCATTGGAGCGAAAAAAAAACCTTGAATTTCGAAAACTAAAAACTTCAAAAACTGAATTTTCCAGAAAACGATATTTTAGAAAAAAAAACTATTGCAAAATAGTTTTCAGTRAACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACACTGTACTATAGTAAACTAGTTATGACGTAAGCAATTTGAAACTTTTCTGACTGAAAAAAAAACAAAAAAGTGAATAGTCCTATTAATAAGATAAGGAAGTACAATCGATTGTAACAATGATGGGTGTTTTTGAATTTTCTTTACGACGATTAATGAGGTGAGGAGAGTCTCAAAGTTGAAACTTGGTTGGTCACCAGTTCTATTTTTTTGTTAGGGCCAACGTCTTTTTTTCTCTACCAACAGAAAAAAAAACGACAGAATTCGTCAGTATGTCTCTTTTTCCATAGTTCTTTTTGGCTGTTTTTCAGCCCCGACATGGGGCCCCGGGGGCTATAATCGCTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTTTTTTCTTCAGTCAGTTTTTTTGCGACCCTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>194 161 152 133 91 72 54 42 34 33 22 12</canonical_bands>
                <polymorphic_bands>224 194 161 152 72 54 42 34 33 22 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAATGTCCAGATTTACG</pcr_primer_p1>
		<pcr_primer_p2>GTGTCGTTAGAGTATATTTCCATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAATGTCCAGATTTACGGTGTTTCAACAACATTCGAATTGTTCATTGGAGCGAAAAAAAAACCTTGAATTTCGAAAACTAAAAACTTCAAAAACTGAATTTTCCAGAAAACGATATTTTAGAAAAAAAAACTATTGCAAAATAGTTTTCAGTGAACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACAC</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAATGTCCAGATTTACGGTGTTTCAACAACATTCGAATTGTTCATTGGAGCGAAAAAAAAACCTTGAATTTCGAAAACTAAAAACTTCAAAAACTGAATTTTCCAGAAAACGATATTTTAGAAAAAAAAACTATTGCAAAATAGTTTTCAGTRAACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb8998</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>130647</contig_pos>
        <strand>+</strand>
        <context>CTAGTTATGA[A/C]GTAAGCAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAATGGAAATATACTCTAACGACACTGTACTATAGTAAACTAGTTATGA</left_flank>
        <right_flank>GTAAGCAATTTGAAACTTTTCTGACTGAAAAAAAAACAAAAAAGTGAATA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGAAAATGCGAATGGTCGATATCCAGAGATGACAGTTTCGAAATGAGATATTGTGATTTTTAATATAAATAGAGGGAAAGTCAACGTTCTCTTCTGAAAAATGGGAATTTCATGTAGTTAGGAGAAACTGAAATTTCTATAGAGAAAGGGCTTTTCGATTTTTGGGCTTGATTGATAGGTTTCAAAATTTTGATCGAAATTTAGCAAAAAATCGATATCTGAAGCTTTGAAATGTCCAGATTTACGGTGTTTCAACAACATTCGAATTGTTCATTGGAGCGAAAAAAAAACCTTGAATTTCGAAAACTAAAAACTTCAAAAACTGAATTTTCCAGAAAACGATATTTTAGAAAAAAAAACTATTGCAAAATAGTTTTCAGTGAACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACACTGTACTATAGTAAACTAGTTATGACGTAAGCAATTTGAAACTTTTCTGACTGAAAAAAAAACAAAAAAGTGAATAGTCCTATTAATAAGATAAGGAAGTACAATCGATTGTAACAATGATGGGTGTTTTTGAATTTTCTTTACGACGATTAATGAGGTGAGGAGAGTCTCAAAGTTGAAACTTGGTTGGTCACCAGTTCTATTTTTTTGTTAGGGCCAACGTCTTTTTTTCTCTACCAACAGAAAAAAAAACGACAGAATTCGTCAGTATGTCTCTTTTTCCATAGTTCTTTTTGGCTGTTTTTCAGCCCCGACATGGGGCCCCGGGGGCTATAATCGCTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTTTTTTCTTCAGTCAGTTTTTTTGCGACCCTGTCTAGAATTTTTTTCAGCGGTGGCTGAGGATAGAGAACGAGAGACACCCGCACTCCGATTGGCCAGTGTCAGCTCTGGACGTTGGGACAAAAGTACCGCCCAGTTTTTTTCCTCTCCT</canonical>
            <polymorphic>TAGAAAATGCGAATGGTCGATATCCAGAGATGACAGTTTCGAAATGAGATATTGTGATTTTTAATATAAATAGAGGGAAAGTCAACGTTCTCTTCTGAAAAATGGGAATTTCATGTAGTTAGGAGAAACTGAAATTTCTATAGAGAAAGGGCTTTTCGATTTTTGGGCTTGATTGATAGGTTTCAAAATTTTGATCGAAATTTAGCAAAAAATCGATATCTGAAGCTTTGAAATGTCCAGATTTACGGTGTTTCAACAACATTCGAATTGTTCATTGGAGCGAAAAAAAAACCTTGAATTTCGAAAACTAAAAACTTCAAAAACTGAATTTTCCAGAAAACGATATTTTAGAAAAAAAAACTATTGCAAAATAGTTTTCAGTGAACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACACTGTACTATAGTAAACTAGTTATGAMGTAAGCAATTTGAAACTTTTCTGACTGAAAAAAAAACAAAAAAGTGAATAGTCCTATTAATAAGATAAGGAAGTACAATCGATTGTAACAATGATGGGTGTTTTTGAATTTTCTTTACGACGATTAATGAGGTGAGGAGAGTCTCAAAGTTGAAACTTGGTTGGTCACCAGTTCTATTTTTTTGTTAGGGCCAACGTCTTTTTTTCTCTACCAACAGAAAAAAAAACGACAGAATTCGTCAGTATGTCTCTTTTTCCATAGTTCTTTTTGGCTGTTTTTCAGCCCCGACATGGGGCCCCGGGGGCTATAATCGCTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTTTTTTCTTCAGTCAGTTTTTTTGCGACCCTGTCTAGAATTTTTTTCAGCGGTGGCTGAGGATAGAGAACGAGAGACACCCGCACTCCGATTGGCCAGTGTCAGCTCTGGACGTTGGGACAAAAGTACCGCCCAGTTTTTTTCCTCTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>414 195 147 120 85 39</canonical_bands>
                <polymorphic_bands>609 147 120 85 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTGGATTATTTTATCAGAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCATTAATCGTCGTAAAGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACACTGTACTATAGTAAACTAGTTATGACGTAAGCAATTTGAAACTTTTCTGACTGAAAAAAAAACAAAAAAGTGAATAGTCCTATTAATAAGATAAGGAAGTACAATCGATTGTAACAATGATGGGTGTTTTTGAATTTTCTTTACGACGATTAATGA</canonical_amplicon>
		<polymorphic_amplicon>AACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACACTGTACTATAGTAAACTAGTTATGAMGTAAGCAATTTGAAACTTTTCTGACTGAAAAAAAAACAAAAAAGTGAATAGTCCTATTAATAAGATAAGGAAGTACAATCGATTGTAACAATGATGGGTGTTTTTGAATTTTCTTTACGACGATTAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9001</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>130698</contig_pos>
        <strand></strand>
        <context>AAAGTGAATA[G/C]TCCTATTAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GTAAGCAATTTGAAACTTTTCTGACTGAAAAAAAAACAAAAAAGTGAATA</left_flank>
        <right_flank>TCCTATTAATAAGATAAGGAAGTACAATCGATTGTAACAATGATGGGTGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTGATTTTTAATATAAATAGAGGGAAAGTCAACGTTCTCTTCTGAAAAATGGGAATTTCATGTAGTTAGGAGAAACTGAAATTTCTATAGAGAAAGGGCTTTTCGATTTTTGGGCTTGATTGATAGGTTTCAAAATTTTGATCGAAATTTAGCAAAAAATCGATATCTGAAGCTTTGAAATGTCCAGATTTACGGTGTTTCAACAACATTCGAATTGTTCATTGGAGCGAAAAAAAAACCTTGAATTTCGAAAACTAAAAACTTCAAAAACTGAATTTTCCAGAAAACGATATTTTAGAAAAAAAAACTATTGCAAAATAGTTTTCAGTGAACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACACTGTACTATAGTAAACTAGTTATGACGTAAGCAATTTGAAACTTTTCTGACTGAAAAAAAAACAAAAAAGTGAATAGTCCTATTAATAAGATAAGGAAGTACAATCGATTGTAACAATGATGGGTGTTTTTGAATTTTCTTTACGACGATTAATGAGGTGAGGAGAGTCTCAAAGTTGAAACTTGGTTGGTCACCAGTTCTATTTTTTTGTTAGGGCCAACGTCTTTTTTTCTCTACCAACAGAAAAAAAAACGACAGAATTCGTCAGTATGTCTCTTTTTCCATAGTTCTTTTTGGCTGTTTTTCAGCCCCGACATGGGGCCCCGGGGGCTATAATCGCTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTTTTTTCTTCAGTCAGTTTTTTTGCGACCCTGTCTAGAATTTTTTTCAGCGGTGGCTGAGGATAGAGAACGAGAGACACCCGCACTCCGATTGGCCAGTGTCAGCTCTGGACGTTGGGACAAAAGTACCGCCCAGTTTTTTTCCTCTCCTGCTGTCGCATCGTCGCCATCATCGAGACTACTACTATTTCGCGAGCGACTC</canonical>
            <polymorphic>TTGTGATTTTTAATATAAATAGAGGGAAAGTCAACGTTCTCTTCTGAAAAATGGGAATTTCATGTAGTTAGGAGAAACTGAAATTTCTATAGAGAAAGGGCTTTTCGATTTTTGGGCTTGATTGATAGGTTTCAAAATTTTGATCGAAATTTAGCAAAAAATCGATATCTGAAGCTTTGAAATGTCCAGATTTACGGTGTTTCAACAACATTCGAATTGTTCATTGGAGCGAAAAAAAAACCTTGAATTTCGAAAACTAAAAACTTCAAAAACTGAATTTTCCAGAAAACGATATTTTAGAAAAAAAAACTATTGCAAAATAGTTTTCAGTGAACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACACTGTACTATAGTAAACTAGTTATGACGTAAGCAATTTGAAACTTTTCTGACTGAAAAAAAAACAAAAAAGTGAATASTCCTATTAATAAGATAAGGAAGTACAATCGATTGTAACAATGATGGGTGTTTTTGAATTTTCTTTACGACGATTAATGAGGTGAGGAGAGTCTCAAAGTTGAAACTTGGTTGGTCACCAGTTCTATTTTTTTGTTAGGGCCAACGTCTTTTTTTCTCTACCAACAGAAAAAAAAACGACAGAATTCGTCAGTATGTCTCTTTTTCCATAGTTCTTTTTGGCTGTTTTTCAGCCCCGACATGGGGCCCCGGGGGCTATAATCGCTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTTTTTTCTTCAGTCAGTTTTTTTGCGACCCTGTCTAGAATTTTTTTCAGCGGTGGCTGAGGATAGAGAACGAGAGACACCCGCACTCCGATTGGCCAGTGTCAGCTCTGGACGTTGGGACAAAAGTACCGCCCAGTTTTTTTCCTCTCCTGCTGTCGCATCGTCGCCATCATCGAGACTACTACTATTTCGCGAGCGACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTGGATTATTTTATCAGAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCATTAATCGTCGTAAAGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACACTGTACTATAGTAAACTAGTTATGACGTAAGCAATTTGAAACTTTTCTGACTGAAAAAAAAACAAAAAAGTGAATAGTCCTATTAATAAGATAAGGAAGTACAATCGATTGTAACAATGATGGGTGTTTTTGAATTTTCTTTACGACGATTAATGA</canonical_amplicon>
		<polymorphic_amplicon>AACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACACTGTACTATAGTAAACTAGTTATGACGTAAGCAATTTGAAACTTTTCTGACTGAAAAAAAAACAAAAAAGTGAATASTCCTATTAATAAGATAAGGAAGTACAATCGATTGTAACAATGATGGGTGTTTTTGAATTTTCTTTACGACGATTAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9002</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>130816</contig_pos>
        <strand>+</strand>
        <context>GGTTGGTCAC[C/G]AGTTCTATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GACGATTAATGAGGTGAGGAGAGTCTCAAAGTTGAAACTTGGTTGGTCAC</left_flank>
        <right_flank>AGTTCTATTTTTTTGTTAGGGCCAACGTCTTTTTTTCTCTACCAACAGAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATTGATAGGTTTCAAAATTTTGATCGAAATTTAGCAAAAAATCGATATCTGAAGCTTTGAAATGTCCAGATTTACGGTGTTTCAACAACATTCGAATTGTTCATTGGAGCGAAAAAAAAACCTTGAATTTCGAAAACTAAAAACTTCAAAAACTGAATTTTCCAGAAAACGATATTTTAGAAAAAAAAACTATTGCAAAATAGTTTTCAGTGAACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACACTGTACTATAGTAAACTAGTTATGACGTAAGCAATTTGAAACTTTTCTGACTGAAAAAAAAACAAAAAAGTGAATAGTCCTATTAATAAGATAAGGAAGTACAATCGATTGTAACAATGATGGGTGTTTTTGAATTTTCTTTACGACGATTAATGAGGTGAGGAGAGTCTCAAAGTTGAAACTTGGTTGGTCACCAGTTCTATTTTTTTGTTAGGGCCAACGTCTTTTTTTCTCTACCAACAGAAAAAAAAACGACAGAATTCGTCAGTATGTCTCTTTTTCCATAGTTCTTTTTGGCTGTTTTTCAGCCCCGACATGGGGCCCCGGGGGCTATAATCGCTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTTTTTTCTTCAGTCAGTTTTTTTGCGACCCTGTCTAGAATTTTTTTCAGCGGTGGCTGAGGATAGAGAACGAGAGACACCCGCACTCCGATTGGCCAGTGTCAGCTCTGGACGTTGGGACAAAAGTACCGCCCAGTTTTTTTCCTCTCCTGCTGTCGCATCGTCGCCATCATCGAGACTACTACTATTTCGCGAGCGACTCTCGCTTTCTAATCTTGCCCCCCGATTCACTTTGCGTGCAGCAAAAACAAAGTATACGGTAAAAAATGGACGTGTTTTACACTGTGCGGGCCTTTTTTTTGAACTTTTAACAAACTTGG</canonical>
            <polymorphic>TGATTGATAGGTTTCAAAATTTTGATCGAAATTTAGCAAAAAATCGATATCTGAAGCTTTGAAATGTCCAGATTTACGGTGTTTCAACAACATTCGAATTGTTCATTGGAGCGAAAAAAAAACCTTGAATTTCGAAAACTAAAAACTTCAAAAACTGAATTTTCCAGAAAACGATATTTTAGAAAAAAAAACTATTGCAAAATAGTTTTCAGTGAACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACACTGTACTATAGTAAACTAGTTATGACGTAAGCAATTTGAAACTTTTCTGACTGAAAAAAAAACAAAAAAGTGAATAGTCCTATTAATAAGATAAGGAAGTACAATCGATTGTAACAATGATGGGTGTTTTTGAATTTTCTTTACGACGATTAATGAGGTGAGGAGAGTCTCAAAGTTGAAACTTGGTTGGTCACSAGTTCTATTTTTTTGTTAGGGCCAACGTCTTTTTTTCTCTACCAACAGAAAAAAAAACGACAGAATTCGTCAGTATGTCTCTTTTTCCATAGTTCTTTTTGGCTGTTTTTCAGCCCCGACATGGGGCCCCGGGGGCTATAATCGCTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTTTTTTCTTCAGTCAGTTTTTTTGCGACCCTGTCTAGAATTTTTTTCAGCGGTGGCTGAGGATAGAGAACGAGAGACACCCGCACTCCGATTGGCCAGTGTCAGCTCTGGACGTTGGGACAAAAGTACCGCCCAGTTTTTTTCCTCTCCTGCTGTCGCATCGTCGCCATCATCGAGACTACTACTATTTCGCGAGCGACTCTCGCTTTCTAATCTTGCCCCCCGATTCACTTTGCGTGCAGCAAAAACAAAGTATACGGTAAAAAATGGACGTGTTTTACACTGTGCGGGCCTTTTTTTTGAACTTTTAACAAACTTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGTNACC</site>
                <isoschizomers>
                    <enzyme>BstEII</enzyme>
                    <enzyme>BstPI</enzyme>
                    <enzyme>Eco91I</enzyme>
                    <enzyme>EcoO65I</enzyme>
                    <enzyme>PspEI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAAGCAATTTGAAACTTTTCTG</pcr_primer_p1>
		<pcr_primer_p2>CTGACGAATTCTGTCGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTAAGCAATTTGAAACTTTTCTGACTGAAAAAAAAACAAAAAAGTGAATAGTCCTATTAATAAGATAAGGAAGTACAATCGATTGTAACAATGATGGGTGTTTTTGAATTTTCTTTACGACGATTAATGAGGTGAGGAGAGTCTCAAAGTTGAAACTTGGTTGGTCACCAGTTCTATTTTTTTGTTAGGGCCAACGTCTTTTTTTCTCTACCAACAGAAAAAAAAACGACAGAATTCGTCAG</canonical_amplicon>
		<polymorphic_amplicon>GTAAGCAATTTGAAACTTTTCTGACTGAAAAAAAAACAAAAAAGTGAATAGTCCTATTAATAAGATAAGGAAGTACAATCGATTGTAACAATGATGGGTGTTTTTGAATTTTCTTTACGACGATTAATGAGGTGAGGAGAGTCTCAAAGTTGAAACTTGGTTGGTCACSAGTTCTATTTTTTTGTTAGGGCCAACGTCTTTTTTTCTCTACCAACAGAAAAAAAAACGACAGAATTCGTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9003</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>130931</contig_pos>
        <strand>+</strand>
        <context>GTTTTTCAGC[A/C]CCGACATGGG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTCGTCAGTATGTCTCTTTTTCCATAGTTCTTTTTGGCTGTTTTTCAGC</left_flank>
        <right_flank>CCGACATGGGGCCCCGGGGGCTATAATCGCTGGTGGTTCGTACTCTCGTC</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAACCTTGAATTTCGAAAACTAAAAACTTCAAAAACTGAATTTTCCAGAAAACGATATTTTAGAAAAAAAAACTATTGCAAAATAGTTTTCAGTGAACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACACTGTACTATAGTAAACTAGTTATGACGTAAGCAATTTGAAACTTTTCTGACTGAAAAAAAAACAAAAAAGTGAATAGTCCTATTAATAAGATAAGGAAGTACAATCGATTGTAACAATGATGGGTGTTTTTGAATTTTCTTTACGACGATTAATGAGGTGAGGAGAGTCTCAAAGTTGAAACTTGGTTGGTCACCAGTTCTATTTTTTTGTTAGGGCCAACGTCTTTTTTTCTCTACCAACAGAAAAAAAAACGACAGAATTCGTCAGTATGTCTCTTTTTCCATAGTTCTTTTTGGCTGTTTTTCAGCCCCGACATGGGGCCCCGGGGGCTATAATCGCTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTTTTTTCTTCAGTCAGTTTTTTTGCGACCCTGTCTAGAATTTTTTTCAGCGGTGGCTGAGGATAGAGAACGAGAGACACCCGCACTCCGATTGGCCAGTGTCAGCTCTGGACGTTGGGACAAAAGTACCGCCCAGTTTTTTTCCTCTCCTGCTGTCGCATCGTCGCCATCATCGAGACTACTACTATTTCGCGAGCGACTCTCGCTTTCTAATCTTGCCCCCCGATTCACTTTGCGTGCAGCAAAAACAAAGTATACGGTAAAAAATGGACGTGTTTTACACTGTGCGGGCCTTTTTTTTGAACTTTTAACAAACTTGGAATGAAATTTTTTAGAATGAAATGAAGAAAAGAGACAAAAATTACAATTTGGGTCTTTTTCAAAAAACAACACAGTAATCAAACTTGCACTCTGCAATTTAGAAAGGATGATATA</canonical>
            <polymorphic>AAAAAAACCTTGAATTTCGAAAACTAAAAACTTCAAAAACTGAATTTTCCAGAAAACGATATTTTAGAAAAAAAAACTATTGCAAAATAGTTTTCAGTGAACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACACTGTACTATAGTAAACTAGTTATGACGTAAGCAATTTGAAACTTTTCTGACTGAAAAAAAAACAAAAAAGTGAATAGTCCTATTAATAAGATAAGGAAGTACAATCGATTGTAACAATGATGGGTGTTTTTGAATTTTCTTTACGACGATTAATGAGGTGAGGAGAGTCTCAAAGTTGAAACTTGGTTGGTCACCAGTTCTATTTTTTTGTTAGGGCCAACGTCTTTTTTTCTCTACCAACAGAAAAAAAAACGACAGAATTCGTCAGTATGTCTCTTTTTCCATAGTTCTTTTTGGCTGTTTTTCAGCMCCGACATGGGGCCCCGGGGGCTATAATCGCTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTTTTTTCTTCAGTCAGTTTTTTTGCGACCCTGTCTAGAATTTTTTTCAGCGGTGGCTGAGGATAGAGAACGAGAGACACCCGCACTCCGATTGGCCAGTGTCAGCTCTGGACGTTGGGACAAAAGTACCGCCCAGTTTTTTTCCTCTCCTGCTGTCGCATCGTCGCCATCATCGAGACTACTACTATTTCGCGAGCGACTCTCGCTTTCTAATCTTGCCCCCCGATTCACTTTGCGTGCAGCAAAAACAAAGTATACGGTAAAAAATGGACGTGTTTTACACTGTGCGGGCCTTTTTTTTGAACTTTTAACAAACTTGGAATGAAATTTTTTAGAATGAAATGAAGAAAAGAGACAAAAATTACAATTTGGGTCTTTTTCAAAAAACAACACAGTAATCAAACTTGCACTCTGCAATTTAGAAAGGATGATATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>507 493</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>406 186 144 101 81 39 13 11 10 9</canonical_bands>
                <polymorphic_bands>406 186 144 101 81 39 24 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACAGAATTCGTCAGTATGTCTC</pcr_primer_p1>
		<pcr_primer_p2>GTGTCTCTCGTTCTCTATCCTC</pcr_primer_p2>
		<pcr_amplicon_size>202</pcr_amplicon_size>
		<canonical_amplicon>GACAGAATTCGTCAGTATGTCTCTTTTTCCATAGTTCTTTTTGGCTGTTTTTCAGCCCCGACATGGGGCCCCGGGGGCTATAATCGCTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTTTTTTCTTCAGTCAGTTTTTTTGCGACCCTGTCTAGAATTTTTTTCAGCGGTGGCTGAGGATAGAGAACGAGAGACAC</canonical_amplicon>
		<polymorphic_amplicon>GACAGAATTCGTCAGTATGTCTCTTTTTCCATAGTTCTTTTTGGCTGTTTTTCAGCMCCGACATGGGGCCCCGGGGGCTATAATCGCTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTTTTTTCTTCAGTCAGTTTTTTTGCGACCCTGTCTAGAATTTTTTTCAGCGGTGGCTGAGGATAGAGAACGAGAGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9004</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>130960</contig_pos>
        <strand>+</strand>
        <context>GGCTATAATC[A/G]CTGGTGGTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTTTTGGCTGTTTTTCAGCCCCGACATGGGGCCCCGGGGGCTATAATC</left_flank>
        <right_flank>CTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTTTTTTCTTCAGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTCAAAAACTGAATTTTCCAGAAAACGATATTTTAGAAAAAAAAACTATTGCAAAATAGTTTTCAGTGAACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACACTGTACTATAGTAAACTAGTTATGACGTAAGCAATTTGAAACTTTTCTGACTGAAAAAAAAACAAAAAAGTGAATAGTCCTATTAATAAGATAAGGAAGTACAATCGATTGTAACAATGATGGGTGTTTTTGAATTTTCTTTACGACGATTAATGAGGTGAGGAGAGTCTCAAAGTTGAAACTTGGTTGGTCACCAGTTCTATTTTTTTGTTAGGGCCAACGTCTTTTTTTCTCTACCAACAGAAAAAAAAACGACAGAATTCGTCAGTATGTCTCTTTTTCCATAGTTCTTTTTGGCTGTTTTTCAGCCCCGACATGGGGCCCCGGGGGCTATAATCGCTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTTTTTTCTTCAGTCAGTTTTTTTGCGACCCTGTCTAGAATTTTTTTCAGCGGTGGCTGAGGATAGAGAACGAGAGACACCCGCACTCCGATTGGCCAGTGTCAGCTCTGGACGTTGGGACAAAAGTACCGCCCAGTTTTTTTCCTCTCCTGCTGTCGCATCGTCGCCATCATCGAGACTACTACTATTTCGCGAGCGACTCTCGCTTTCTAATCTTGCCCCCCGATTCACTTTGCGTGCAGCAAAAACAAAGTATACGGTAAAAAATGGACGTGTTTTACACTGTGCGGGCCTTTTTTTTGAACTTTTAACAAACTTGGAATGAAATTTTTTAGAATGAAATGAAGAAAAGAGACAAAAATTACAATTTGGGTCTTTTTCAAAAAACAACACAGTAATCAAACTTGCACTCTGCAATTTAGAAAGGATGATATAAGTACAGTATCAAGATCCAAAAAAACAGA</canonical>
            <polymorphic>ACTTCAAAAACTGAATTTTCCAGAAAACGATATTTTAGAAAAAAAAACTATTGCAAAATAGTTTTCAGTGAACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACACTGTACTATAGTAAACTAGTTATGACGTAAGCAATTTGAAACTTTTCTGACTGAAAAAAAAACAAAAAAGTGAATAGTCCTATTAATAAGATAAGGAAGTACAATCGATTGTAACAATGATGGGTGTTTTTGAATTTTCTTTACGACGATTAATGAGGTGAGGAGAGTCTCAAAGTTGAAACTTGGTTGGTCACCAGTTCTATTTTTTTGTTAGGGCCAACGTCTTTTTTTCTCTACCAACAGAAAAAAAAACGACAGAATTCGTCAGTATGTCTCTTTTTCCATAGTTCTTTTTGGCTGTTTTTCAGCCCCGACATGGGGCCCCGGGGGCTATAATCRCTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTTTTTTCTTCAGTCAGTTTTTTTGCGACCCTGTCTAGAATTTTTTTCAGCGGTGGCTGAGGATAGAGAACGAGAGACACCCGCACTCCGATTGGCCAGTGTCAGCTCTGGACGTTGGGACAAAAGTACCGCCCAGTTTTTTTCCTCTCCTGCTGTCGCATCGTCGCCATCATCGAGACTACTACTATTTCGCGAGCGACTCTCGCTTTCTAATCTTGCCCCCCGATTCACTTTGCGTGCAGCAAAAACAAAGTATACGGTAAAAAATGGACGTGTTTTACACTGTGCGGGCCTTTTTTTTGAACTTTTAACAAACTTGGAATGAAATTTTTTAGAATGAAATGAAGAAAAGAGACAAAAATTACAATTTGGGTCTTTTTCAAAAAACAACACAGTAATCAAACTTGCACTCTGCAATTTAGAAAGGATGATATAAGTACAGTATCAAGATCCAAAAAAACAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>488 262 241 9</canonical_bands>
                <polymorphic_bands>488 262 250</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACAGAATTCGTCAGTATGTCTC</pcr_primer_p1>
		<pcr_primer_p2>GTGTCTCTCGTTCTCTATCCTC</pcr_primer_p2>
		<pcr_amplicon_size>202</pcr_amplicon_size>
		<canonical_amplicon>GACAGAATTCGTCAGTATGTCTCTTTTTCCATAGTTCTTTTTGGCTGTTTTTCAGCCCCGACATGGGGCCCCGGGGGCTATAATCGCTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTTTTTTCTTCAGTCAGTTTTTTTGCGACCCTGTCTAGAATTTTTTTCAGCGGTGGCTGAGGATAGAGAACGAGAGACAC</canonical_amplicon>
		<polymorphic_amplicon>GACAGAATTCGTCAGTATGTCTCTTTTTCCATAGTTCTTTTTGGCTGTTTTTCAGCCCCGACATGGGGCCCCGGGGGCTATAATCRCTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTTTTTTCTTCAGTCAGTTTTTTTGCGACCCTGTCTAGAATTTTTTTCAGCGGTGGCTGAGGATAGAGAACGAGAGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9005</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>131002</contig_pos>
        <strand>+</strand>
        <context>TCCCTTTTTT[C/T]TCTTCAGTYA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTATAATCGCTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTTTT</left_flank>
        <right_flank>TCTTCAGTCAGTTTTTTTGCGACCCTGTCTAGAATTTTTTTCAGCGGTGG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAACTATTGCAAAATAGTTTTCAGTGAACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACACTGTACTATAGTAAACTAGTTATGACGTAAGCAATTTGAAACTTTTCTGACTGAAAAAAAAACAAAAAAGTGAATAGTCCTATTAATAAGATAAGGAAGTACAATCGATTGTAACAATGATGGGTGTTTTTGAATTTTCTTTACGACGATTAATGAGGTGAGGAGAGTCTCAAAGTTGAAACTTGGTTGGTCACCAGTTCTATTTTTTTGTTAGGGCCAACGTCTTTTTTTCTCTACCAACAGAAAAAAAAACGACAGAATTCGTCAGTATGTCTCTTTTTCCATAGTTCTTTTTGGCTGTTTTTCAGCCCCGACATGGGGCCCCGGGGGCTATAATCGCTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTTTTTTCTTCAGTCAGTTTTTTTGCGACCCTGTCTAGAATTTTTTTCAGCGGTGGCTGAGGATAGAGAACGAGAGACACCCGCACTCCGATTGGCCAGTGTCAGCTCTGGACGTTGGGACAAAAGTACCGCCCAGTTTTTTTCCTCTCCTGCTGTCGCATCGTCGCCATCATCGAGACTACTACTATTTCGCGAGCGACTCTCGCTTTCTAATCTTGCCCCCCGATTCACTTTGCGTGCAGCAAAAACAAAGTATACGGTAAAAAATGGACGTGTTTTACACTGTGCGGGCCTTTTTTTTGAACTTTTAACAAACTTGGAATGAAATTTTTTAGAATGAAATGAAGAAAAGAGACAAAAATTACAATTTGGGTCTTTTTCAAAAAACAACACAGTAATCAAACTTGCACTCTGCAATTTAGAAAGGATGATATAAGTACAGTATCAAGATCCAAAAAAACAGAATTTCGTAATAATAAAACAACGACACTATGCTAGTAAAAAAG</canonical>
            <polymorphic>AAAAACTATTGCAAAATAGTTTTCAGTGAACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACACTGTACTATAGTAAACTAGTTATGACGTAAGCAATTTGAAACTTTTCTGACTGAAAAAAAAACAAAAAAGTGAATAGTCCTATTAATAAGATAAGGAAGTACAATCGATTGTAACAATGATGGGTGTTTTTGAATTTTCTTTACGACGATTAATGAGGTGAGGAGAGTCTCAAAGTTGAAACTTGGTTGGTCACCAGTTCTATTTTTTTGTTAGGGCCAACGTCTTTTTTTCTCTACCAACAGAAAAAAAAACGACAGAATTCGTCAGTATGTCTCTTTTTCCATAGTTCTTTTTGGCTGTTTTTCAGCCCCGACATGGGGCCCCGGGGGCTATAATCGCTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTTTTYTCTTCAGTCAGTTTTTTTGCGACCCTGTCTAGAATTTTTTTCAGCGGTGGCTGAGGATAGAGAACGAGAGACACCCGCACTCCGATTGGCCAGTGTCAGCTCTGGACGTTGGGACAAAAGTACCGCCCAGTTTTTTTCCTCTCCTGCTGTCGCATCGTCGCCATCATCGAGACTACTACTATTTCGCGAGCGACTCTCGCTTTCTAATCTTGCCCCCCGATTCACTTTGCGTGCAGCAAAAACAAAGTATACGGTAAAAAATGGACGTGTTTTACACTGTGCGGGCCTTTTTTTTGAACTTTTAACAAACTTGGAATGAAATTTTTTAGAATGAAATGAAGAAAAGAGACAAAAATTACAATTTGGGTCTTTTTCAAAAAACAACACAGTAATCAAACTTGCACTCTGCAATTTAGAAAGGATGATATAAGTACAGTATCAAGATCCAAAAAAACAGAATTTCGTAATAATAAAACAACGACACTATGCTAGTAAAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAGAATTCGTCAGTATGTCTC</pcr_primer_p1>
		<pcr_primer_p2>GTGTCTCTCGTTCTCTATCCTC</pcr_primer_p2>
		<pcr_amplicon_size>202</pcr_amplicon_size>
		<canonical_amplicon>GACAGAATTCGTCAGTATGTCTCTTTTTCCATAGTTCTTTTTGGCTGTTTTTCAGCCCCGACATGGGGCCCCGGGGGCTATAATCGCTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTTTTTTCTTCAGTCAGTTTTTTTGCGACCCTGTCTAGAATTTTTTTCAGCGGTGGCTGAGGATAGAGAACGAGAGACAC</canonical_amplicon>
		<polymorphic_amplicon>GACAGAATTCGTCAGTATGTCTCTTTTTCCATAGTTCTTTTTGGCTGTTTTTCAGCCCCGACATGGGGCCCCGGGGGCTATAATCGCTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTTTTYTCTTCAGTCAGTTTTTTTGCGACCCTGTCTAGAATTTTTTTCAGCGGTGGCTGAGGATAGAGAACGAGAGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9006</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>133998</contig_pos>
        <strand>+</strand>
        <context>CGATGGGAGC[C/G]TTCCCTCTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGGTGGGGGGACGAGGGTTTCTTTTGATTGGCACACTCGACGATGGGAGC</left_flank>
        <right_flank>TTCCCTCTACCAAAAACGAACGACTAGAACAACAACAACGTCTTCTTCTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACTACAGTAACCTTGAAATAATTTCGAACTATCTGGACTTTTCAAAACAGCCAGAACTCTTAAAATGATTCTCAAAAACTTCTTGAAATATAGAAAAGAACAAAAGATTTCTCAAGGATTGAAAGGATCGAGGGAGCTACACCAGGATCAAAGTGATGAGCCTTGCTCGCGTCTGGAGGTCTGTTCTTCAGGTCAACTGACGTCTGTTGCTGTTTTTGTGTCACAAAAGAAGTCTAAGGAGCAAGAGGGGCCCTTGCTGTGTATGTCATGGTTGCGGAACTGAACCAGCGGACTATTTTGCGAGGTTGTTTTCGTTTTCAGCATCCCCCCCCCCCCCCCCCATCGTCCTCTTTTCTCCATCTTCTGTCGTCTTCGTCGTTCGTCTCGAGGAGTGCTGTGCTCGACGTGAGCTTTTTGTCAGTGCTGCTGTTTTCAGATAGGGTGGCGGGGTGGGGGGACGAGGGTTTCTTTTGATTGGCACACTCGACGATGGGAGCGTTCCCTCTACCAAAAACGAACGACTAGAACAACAACAACGTCTTCTTCTAGTACTACTTTTCTAGACTATATGTCTCTTTTTTTTGCCTGAATTCGTTAGTAGGAGTGCTCGGAAAGGATGACTCAGTCTCTGGAACTCTAGTCCATCAGCGAAATGGGGGAACAAAACAGATGACGTGGAAATTTTTTCTACTTTCTCTAAGGAATTGTTTCAAGGTTTATGCTGATCTTAGAAGTATAGAATCGTAACCAGGCGGTTTGCCTAGACCCAAGAAAAAACAAACTTGGCTTGGTATTTATATTCCATGAATTCGGAATGATTGAGCTACGATATAACATGAGAATTAAGGCTAAGAATACGAATGTGGTGCAGAGCACAAAAACAAGCAATGACTATTTTTGCTCTATATGAAAAGAGGTAGATTCTTTAGATGGAAATTCCAAGGAAAAATTTAGAGACATAATTTCGACAGGACAAAAAATGTCGAATGATAAAAACA</canonical>
            <polymorphic>TAACTACAGTAACCTTGAAATAATTTCGAACTATCTGGACTTTTCAAAACAGCCAGAACTCTTAAAATGATTCTCAAAAACTTCTTGAAATATAGAAAAGAACAAAAGATTTCTCAAGGATTGAAAGGATCGAGGGAGCTACACCAGGATCAAAGTGATGAGCCTTGCTCGCGTCTGGAGGTCTGTTCTTCAGGTCAACTGACGTCTGTTGCTGTTTTTGTGTCACAAAAGAAGTCTAAGGAGCAAGAGGGGCCCTTGCTGTGTATGTCATGGTTGCGGAACTGAACCAGCGGACTATTTTGCGAGGTTGTTTTCGTTTTCAGCATCCCCCCCCCCCCCCCCCATCGTCCTCTTTTCTCCATCTTCTGTCGTCTTCGTCGTTCGTCTCGAGGAGTGCTGTGCTCGACGTGAGCTTTTTGTCAGTGCTGCTGTTTTCAGATAGGGTGGCGGGGTGGGGGGACGAGGGTTTCTTTTGATTGGCACACTCGACGATGGGAGCSTTCCCTCTACCAAAAACGAACGACTAGAACAACAACAACGTCTTCTTCTAGTACTACTTTTCTAGACTATATGTCTCTTTTTTTTGCCTGAATTCGTTAGTAGGAGTGCTCGGAAAGGATGACTCAGTCTCTGGAACTCTAGTCCATCAGCGAAATGGGGGAACAAAACAGATGACGTGGAAATTTTTTCTACTTTCTCTAAGGAATTGTTTCAAGGTTTATGCTGATCTTAGAAGTATAGAATCGTAACCAGGCGGTTTGCCTAGACCCAAGAAAAAACAAACTTGGCTTGGTATTTATATTCCATGAATTCGGAATGATTGAGCTACGATATAACATGAGAATTAAGGCTAAGAATACGAATGTGGTGCAGAGCACAAAAACAAGCAATGACTATTTTTGCTCTATATGAAAAGAGGTAGATTCTTTAGATGGAAATTCCAAGGAAAAATTTAGAGACATAATTTCGACAGGACAAAAAATGTCGAATGATAAAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTCTCCATCTTCTGTCGT</pcr_primer_p1>
		<pcr_primer_p2>TACTAACGAATTCAGGCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTTTTCTCCATCTTCTGTCGTCTTCGTCGTTCGTCTCGAGGAGTGCTGTGCTCGACGTGAGCTTTTTGTCAGTGCTGCTGTTTTCAGATAGGGTGGCGGGGTGGGGGGACGAGGGTTTCTTTTGATTGGCACACTCGACGATGGGAGCGTTCCCTCTACCAAAAACGAACGACTAGAACAACAACAACGTCTTCTTCTAGTACTACTTTTCTAGACTATATGTCTCTTTTTTTTGCCTGAATTCGTTAGTA</canonical_amplicon>
		<polymorphic_amplicon>CTTTTCTCCATCTTCTGTCGTCTTCGTCGTTCGTCTCGAGGAGTGCTGTGCTCGACGTGAGCTTTTTGTCAGTGCTGCTGTTTTCAGATAGGGTGGCGGGGTGGGGGGACGAGGGTTTCTTTTGATTGGCACACTCGACGATGGGAGCSTTCCCTCTACCAAAAACGAACGACTAGAACAACAACAACGTCTTCTTCTAGTACTACTTTTCTAGACTATATGTCTCTTTTTTTTGCCTGAATTCGTTAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9007</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>133897</contig_pos>
        <strand>+</strand>
        <context>GAGGAGTGCT[A/G]TGCTCGACGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTCTTTTCTCCATCTTCTGTCGTCTTCGTCGTTCGTCTCGAGGAGTGCT</left_flank>
        <right_flank>TGCTCGACGTGAGCTTTTTGTCAGTGCTGCTGTTTTCAGATAGGGTGGCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGGACAAGTCAAATAGTTGGGATTTGAAAGATTTTGAGAAGTTTCAGATGCACTTTAAGGACATTTTTGAAAACAAAGTTATTTTCAAGATTGAAAACATTAACTACAGTAACCTTGAAATAATTTCGAACTATCTGGACTTTTCAAAACAGCCAGAACTCTTAAAATGATTCTCAAAAACTTCTTGAAATATAGAAAAGAACAAAAGATTTCTCAAGGATTGAAAGGATCGAGGGAGCTACACCAGGATCAAAGTGATGAGCCTTGCTCGCGTCTGGAGGTCTGTTCTTCAGGTCAACTGACGTCTGTTGCTGTTTTTGTGTCACAAAAGAAGTCTAAGGAGCAAGAGGGGCCCTTGCTGTGTATGTCATGGTTGCGGAACTGAACCAGCGGACTATTTTGCGAGGTTGTTTTCGTTTTCAGCATCCCCCCCCCCCCCCCCCATCGTCCTCTTTTCTCCATCTTCTGTCGTCTTCGTCGTTCGTCTCGAGGAGTGCTGTGCTCGACGTGAGCTTTTTGTCAGTGCTGCTGTTTTCAGATAGGGTGGCGGGGTGGGGGGACGAGGGTTTCTTTTGATTGGCACACTCGACGATGGGAGCGTTCCCTCTACCAAAAACGAACGACTAGAACAACAACAACGTCTTCTTCTAGTACTACTTTTCTAGACTATATGTCTCTTTTTTTTGCCTGAATTCGTTAGTAGGAGTGCTCGGAAAGGATGACTCAGTCTCTGGAACTCTAGTCCATCAGCGAAATGGGGGAACAAAACAGATGACGTGGAAATTTTTTCTACTTTCTCTAAGGAATTGTTTCAAGGTTTATGCTGATCTTAGAAGTATAGAATCGTAACCAGGCGGTTTGCCTAGACCCAAGAAAAAACAAACTTGGCTTGGTATTTATATTCCATGAATTCGGAATGATTGAGCTACGATATAACATGAGAATTAAGGCTAAGAATACGAATGTGGTGCAGAGCACAAAAACAAGCAATGACTATTT</canonical>
            <polymorphic>GAGGACAAGTCAAATAGTTGGGATTTGAAAGATTTTGAGAAGTTTCAGATGCACTTTAAGGACATTTTTGAAAACAAAGTTATTTTCAAGATTGAAAACATTAACTACAGTAACCTTGAAATAATTTCGAACTATCTGGACTTTTCAAAACAGCCAGAACTCTTAAAATGATTCTCAAAAACTTCTTGAAATATAGAAAAGAACAAAAGATTTCTCAAGGATTGAAAGGATCGAGGGAGCTACACCAGGATCAAAGTGATGAGCCTTGCTCGCGTCTGGAGGTCTGTTCTTCAGGTCAACTGACGTCTGTTGCTGTTTTTGTGTCACAAAAGAAGTCTAAGGAGCAAGAGGGGCCCTTGCTGTGTATGTCATGGTTGCGGAACTGAACCAGCGGACTATTTTGCGAGGTTGTTTTCGTTTTCAGCATCCCCCCCCCCCCCCCCCATCGTCCTCTTTTCTCCATCTTCTGTCGTCTTCGTCGTTCGTCTCGAGGAGTGCTRTGCTCGACGTGAGCTTTTTGTCAGTGCTGCTGTTTTCAGATAGGGTGGCGGGGTGGGGGGACGAGGGTTTCTTTTGATTGGCACACTCGACGATGGGAGCGTTCCCTCTACCAAAAACGAACGACTAGAACAACAACAACGTCTTCTTCTAGTACTACTTTTCTAGACTATATGTCTCTTTTTTTTGCCTGAATTCGTTAGTAGGAGTGCTCGGAAAGGATGACTCAGTCTCTGGAACTCTAGTCCATCAGCGAAATGGGGGAACAAAACAGATGACGTGGAAATTTTTTCTACTTTCTCTAAGGAATTGTTTCAAGGTTTATGCTGATCTTAGAAGTATAGAATCGTAACCAGGCGGTTTGCCTAGACCCAAGAAAAAACAAACTTGGCTTGGTATTTATATTCCATGAATTCGGAATGATTGAGCTACGATATAACATGAGAATTAAGGCTAAGAATACGAATGTGGTGCAGAGCACAAAAACAAGCAATGACTATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>504 267 207 22</canonical_bands>
                <polymorphic_bands>711 267 22</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>355 267 207 149 22</canonical_bands>
                <polymorphic_bands>356 355 267 22</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>191 188 133 124 71 65 53 38 28 22 21 15 14 9 8 7 5 3 3 2</canonical_bands>
                <polymorphic_bands>191 188 133 124 71 65 53 38 28 22 21 15 14 14 8 7 3 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTATTTTGCGAGGTTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGACGTTGTTGTTGTTCTAGTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACTATTTTGCGAGGTTGTTTTCGTTTTCAGCATCCCCCCCCCCCCCCCCCATCGTCCTCTTTTCTCCATCTTCTGTCGTCTTCGTCGTTCGTCTCGAGGAGTGCTGTGCTCGACGTGAGCTTTTTGTCAGTGCTGCTGTTTTCAGATAGGGTGGCGGGGTGGGGGGACGAGGGTTTCTTTTGATTGGCACACTCGACGATGGGAGCGTTCCCTCTACCAAAAACGAACGACTAGAACAACAACAACGTCTT</canonical_amplicon>
		<polymorphic_amplicon>ACTATTTTGCGAGGTTGTTTTCGTTTTCAGCATCCCCCCCCCCCCCCCCCATCGTCCTCTTTTCTCCATCTTCTGTCGTCTTCGTCGTTCGTCTCGAGGAGTGCTRTGCTCGACGTGAGCTTTTTGTCAGTGCTGCTGTTTTCAGATAGGGTGGCGGGGTGGGGGGACGAGGGTTTCTTTTGATTGGCACACTCGACGATGGGAGCGTTCCCTCTACCAAAAACGAACGACTAGAACAACAACAACGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9008</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>135495</contig_pos>
        <strand></strand>
        <context>CATGTTCTCT[C/T]ATTTTCAGAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGGGAGCGGATAAAAACAAAACAAAACACGAACACACGCATGTTCTCT</left_flank>
        <right_flank>ATTTTCAGACAGAGGCTAAAGTCAGTGGTTGAAAAAAAGGAAACTATTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATTTTTAGGAAATTCAAAATTTTAGCAAATTTTTTAGAAAACAAATTTACAAGAATGAGTTTCAATTCAGAAGAATGAGCAAAGCTGAATCCCAAAAGTGAAAGTTCGTTATTGCTAAGTGGGAGGATCGGATCGGAAGTAACAAAATTTTAACGACCGGTCTGACTAGGCTTTTTAGGAAATTGAGCCAGACTACTCATCTTCATGAGTACTGTTGTTGTTCATCAACTAAATTAGAGGGGCGGTGGTTTTGAGCTAAACAGATTTTATCTTGGAACGCTTCTAGAAAAAAAAAGAAAAAACCAAAAAAATTGGGATGGAACTAACACTCTGTTTTTTTTTCGCAATTTTCAAGGTTGAACACGTCGCCGGGGGTATTGAGTGCAAATTAAGTGGGGCTGGCAAAGAGGAAGCGAACAAAAAAACAGGTGTGTCAAGTTGAAAAAAAATGGGAGCGGATAAAAACAAAACAAAACACGAACACACGCATGTTCTCTCATTTTCAGACAGAGGCTAAAGTCAGTGGTTGAAAAAAAGGAAACTATTTTTTCTACAGAAAAAAAACCGAAACTTTTAGTTGTATTGGGGGTGTTGTACGCTATAAAATTTGTGTCGTCTCAAAACCACCAAACGTCTTCTCCCTCTCTAAATATGTGTGATGTTACGCTAGAGGTAATGAACGACCGAAAAGTAGAACAACGTTCAACAATTCCAATTCTATCGCGGTTTTGAGATCTTTCCCTCCCCTCTATCCGCTTCCTTAAGGTGAGTGTATCTCCTCGGGATTTAGTTCTTGAAGATAAGTAGTAGTGGCGCGGGCGCGCGGACAACTACAAGAACAATAGAATAAGAACGGGGAGGCCTTAGAAGAGGAACAAAGTGTTAGAAAAAGAGATAATGTCTTATCAACTGTCGAGTTGGTTAACCTTGGAATTCTATTGGAAAATGTAGAATAGTTGCAATATGGGAAGTTTCCTTTGAGAAAATCAGTCAGTAAC</canonical>
            <polymorphic>ACATTTTTAGGAAATTCAAAATTTTAGCAAATTTTTTAGAAAACAAATTTACAAGAATGAGTTTCAATTCAGAAGAATGAGCAAAGCTGAATCCCAAAAGTGAAAGTTCGTTATTGCTAAGTGGGAGGATCGGATCGGAAGTAACAAAATTTTAACGACCGGTCTGACTAGGCTTTTTAGGAAATTGAGCCAGACTACTCATCTTCATGAGTACTGTTGTTGTTCATCAACTAAATTAGAGGGGCGGTGGTTTTGAGCTAAACAGATTTTATCTTGGAACGCTTCTAGAAAAAAAAAGAAAAAACCAAAAAAATTGGGATGGAACTAACACTCTGTTTTTTTTTCGCAATTTTCAAGGTTGAACACGTCGCCGGGGGTATTGAGTGCAAATTAAGTGGGGCTGGCAAAGAGGAAGCGAACAAAAAAACAGGTGTGTCAAGTTGAAAAAAAATGGGAGCGGATAAAAACAAAACAAAACACGAACACACGCATGTTCTCTYATTTTCAGACAGAGGCTAAAGTCAGTGGTTGAAAAAAAGGAAACTATTTTTTCTACAGAAAAAAAACCGAAACTTTTAGTTGTATTGGGGGTGTTGTACGCTATAAAATTTGTGTCGTCTCAAAACCACCAAACGTCTTCTCCCTCTCTAAATATGTGTGATGTTACGCTAGAGGTAATGAACGACCGAAAAGTAGAACAACGTTCAACAATTCCAATTCTATCGCGGTTTTGAGATCTTTCCCTCCCCTCTATCCGCTTCCTTAAGGTGAGTGTATCTCCTCGGGATTTAGTTCTTGAAGATAAGTAGTAGTGGCGCGGGCGCGCGGACAACTACAAGAACAATAGAATAAGAACGGGGAGGCCTTAGAAGAGGAACAAAGTGTTAGAAAAAGAGATAATGTCTTATCAACTGTCGAGTTGGTTAACCTTGGAATTCTATTGGAAAATGTAGAATAGTTGCAATATGGGAAGTTTCCTTTGAGAAAATCAGTCAGTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGGTATTGAGTGCAAATTA</pcr_primer_p1>
		<pcr_primer_p2>TGAGACGACACAAATTTTATAGC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGGGTATTGAGTGCAAATTAAGTGGGGCTGGCAAAGAGGAAGCGAACAAAAAAACAGGTGTGTCAAGTTGAAAAAAAATGGGAGCGGATAAAAACAAAACAAAACACGAACACACGCATGTTCTCTCATTTTCAGACAGAGGCTAAAGTCAGTGGTTGAAAAAAAGGAAACTATTTTTTCTACAGAAAAAAAACCGAAACTTTTAGTTGTATTGGGGGTGTTGTACGCTATAAAATTTGTGTCGTCTCA</canonical_amplicon>
		<polymorphic_amplicon>GGGGTATTGAGTGCAAATTAAGTGGGGCTGGCAAAGAGGAAGCGAACAAAAAAACAGGTGTGTCAAGTTGAAAAAAAATGGGAGCGGATAAAAACAAAACAAAACACGAACACACGCATGTTCTCTYATTTTCAGACAGAGGCTAAAGTCAGTGGTTGAAAAAAAGGAAACTATTTTTTCTACAGAAAAAAAACCGAAACTTTTAGTTGTATTGGGGGTGTTGTACGCTATAAAATTTGTGTCGTCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9009</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>139039</contig_pos>
        <strand></strand>
        <context>AAGAAAATAT[G/A]GCTCTCACTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGAAAGCTAGTATACTAAACAAGATAAAAATTTATGTTAAAAGAAAATAT</left_flank>
        <right_flank>GCTCTCACTATGCGAGAGGGGGGGGGGGAGGAAAATAGGAAATCAGGAAC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTTGAGAGAAGATATTTTTTGCAGCGCGAACATCAAAAGAAAAAGAGACGATGAATGCACTTCTCTCGAAATCACACCTAATTATTTTTCCTTTTTTGAAAAATGATTTTTGGGCGTTATCGCAATTTATTTTTGTATAGAAAAGAAAAATCGATTTCAAAATAATCGGGGAAAAAAATTGAAAAAGACGCTTCAGATATGTTCGTTTCCCTACATTCAATGCTCAACATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACACAAGGAAGTCACACCTGTTACGCAAAGAAGGAAGATAGCTTATCAAAAATCAGAACACTGAAAATGTCTAGACTTTTCGAATAGGTGGACGACATTCAATGCGTTAAATTTTTTTCTAGAACTTTTGATAAGAAACGCATGATTAGAGGTCATTTGAGTTTTGAGATATCGAAAGCTAGTATACTAAACAAGATAAAAATTTATGTTAAAAGAAAATATGGCTCTCACTATGCGAGAGGGGGGGGGGGAGGAAAATAGGAAATCAGGAACTTCAGGACTAGAAATTTTCAATTTCCGCTCAATTTCTTCTTTGAAAAACTAAAAACTGGGCATAGAATTTTTGGTAGACACATTCTCGTTTGAGCACTGTTTTAATTACGGTGCGCGCACCCGCCCTTTTTATGTCTCTGTTTTTAGAGACCATAGAAGATCTAATTAAAATTAAGCGCCGGGACAATTAAATGGAGCAATGTTATATGTACAAGAGGAACAATTGAAAAAAAATTATTGCCAAACACGCAATGCTCAAATCTGGTTTCTCTGGTTCTGAAAGTAAGAGTCCAAATGTAAAGTGTGACTTGTAAGCTTTTCATGAGAAAAAAAGAGAAAATAACAAGAGCTGTCTGATATGATTAGACTCAGCCAGTGGGAACATGTTCGAGAGTGGATTTCACGGAAAATCCAATGAGGTTTTTTTCTCTTTCAGATGAGCTTAATGGA</canonical>
            <polymorphic>AACTTGAGAGAAGATATTTTTTGCAGCGCGAACATCAAAAGAAAAAGAGACGATGAATGCACTTCTCTCGAAATCACACCTAATTATTTTTCCTTTTTTGAAAAATGATTTTTGGGCGTTATCGCAATTTATTTTTGTATAGAAAAGAAAAATCGATTTCAAAATAATCGGGGAAAAAAATTGAAAAAGACGCTTCAGATATGTTCGTTTCCCTACATTCAATGCTCAACATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACACAAGGAAGTCACACCTGTTACGCAAAGAAGGAAGATAGCTTATCAAAAATCAGAACACTGAAAATGTCTAGACTTTTCGAATAGGTGGACGACATTCAATGCGTTAAATTTTTTTCTAGAACTTTTGATAAGAAACGCATGATTAGAGGTCATTTGAGTTTTGAGATATCGAAAGCTAGTATACTAAACAAGATAAAAATTTATGTTAAAAGAAAATATRGCTCTCACTATGCGAGAGGGGGGGGGGGAGGAAAATAGGAAATCAGGAACTTCAGGACTAGAAATTTTCAATTTCCGCTCAATTTCTTCTTTGAAAAACTAAAAACTGGGCATAGAATTTTTGGTAGACACATTCTCGTTTGAGCACTGTTTTAATTACGGTGCGCGCACCCGCCCTTTTTATGTCTCTGTTTTTAGAGACCATAGAAGATCTAATTAAAATTAAGCGCCGGGACAATTAAATGGAGCAATGTTATATGTACAAGAGGAACAATTGAAAAAAAATTATTGCCAAACACGCAATGCTCAAATCTGGTTTCTCTGGTTCTGAAAGTAAGAGTCCAAATGTAAAGTGTGACTTGTAAGCTTTTCATGAGAAAAAAAGAGAAAATAACAAGAGCTGTCTGATATGATTAGACTCAGCCAGTGGGAACATGTTCGAGAGTGGATTTCACGGAAAATCCAATGAGGTTTTTTTCTCTTTCAGATGAGCTTAATGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>364 275 137 69 46 43 34 23 9</canonical_bands>
                <polymorphic_bands>410 275 137 69 43 34 23 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCAGAACACTGAAAATGTCT</pcr_primer_p1>
		<pcr_primer_p2>AATTGAAAATTTCTAGTCCTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATCAGAACACTGAAAATGTCTAGACTTTTCGAATAGGTGGACGACATTCAATGCGTTAAATTTTTTTCTAGAACTTTTGATAAGAAACGCATGATTAGAGGTCATTTGAGTTTTGAGATATCGAAAGCTAGTATACTAAACAAGATAAAAATTTATGTTAAAAGAAAATATGGCTCTCACTATGCGAGAGGGGGGGGGGGAGGAAAATAGGAAATCAGGAACTTCAGGACTAGAAATTTTCAATT</canonical_amplicon>
		<polymorphic_amplicon>AAATCAGAACACTGAAAATGTCTAGACTTTTCGAATAGGTGGACGACATTCAATGCGTTAAATTTTTTTCTAGAACTTTTGATAAGAAACGCATGATTAGAGGTCATTTGAGTTTTGAGATATCGAAAGCTAGTATACTAAACAAGATAAAAATTTATGTTAAAAGAAAATATRGCTCTCACTATGCGAGAGGGGGGGGGGGAGGAAAATAGGAAATCAGGAACTTCAGGACTAGAAATTTTCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9010</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>138922</contig_pos>
        <strand></strand>
        <context>CATTCAATGC[G/T]TTAAATTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAACACTGAAAATGTCTAGACTTTTCGAATAGGTGGACGACATTCAATGC</left_flank>
        <right_flank>TTAAATTTTTTTCTAGAACTTTTGATAAGAAACGCATGATTAGAGGTCAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGAGAGGAAAACATTGATACAGACAGACAATCGTAATAATAATTGTATAGGGGACAAAAAATGGAGAAAACTATCTGCCGATAAGTTGCGATTTGTCAAATTGTTCGAAAAAAAAACTTGAGAGAAGATATTTTTTGCAGCGCGAACATCAAAAGAAAAAGAGACGATGAATGCACTTCTCTCGAAATCACACCTAATTATTTTTCCTTTTTTGAAAAATGATTTTTGGGCGTTATCGCAATTTATTTTTGTATAGAAAAGAAAAATCGATTTCAAAATAATCGGGGAAAAAAATTGAAAAAGACGCTTCAGATATGTTCGTTTCCCTACATTCAATGCTCAACATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACACAAGGAAGTCACACCTGTTACGCAAAGAAGGAAGATAGCTTATCAAAAATCAGAACACTGAAAATGTCTAGACTTTTCGAATAGGTGGACGACATTCAATGCGTTAAATTTTTTTCTAGAACTTTTGATAAGAAACGCATGATTAGAGGTCATTTGAGTTTTGAGATATCGAAAGCTAGTATACTAAACAAGATAAAAATTTATGTTAAAAGAAAATATGGCTCTCACTATGCGAGAGGGGGGGGGGGAGGAAAATAGGAAATCAGGAACTTCAGGACTAGAAATTTTCAATTTCCGCTCAATTTCTTCTTTGAAAAACTAAAAACTGGGCATAGAATTTTTGGTAGACACATTCTCGTTTGAGCACTGTTTTAATTACGGTGCGCGCACCCGCCCTTTTTATGTCTCTGTTTTTAGAGACCATAGAAGATCTAATTAAAATTAAGCGCCGGGACAATTAAATGGAGCAATGTTATATGTACAAGAGGAACAATTGAAAAAAAATTATTGCCAAACACGCAATGCTCAAATCTGGTTTCTCTGGTTCTGAAAGTAAGAGTCCAAATGTAAAGTGTGACTTGTAAGCTTTTCATGAGAAAAAAA</canonical>
            <polymorphic>TTTCGAGAGGAAAACATTGATACAGACAGACAATCGTAATAATAATTGTATAGGGGACAAAAAATGGAGAAAACTATCTGCCGATAAGTTGCGATTTGTCAAATTGTTCGAAAAAAAAACTTGAGAGAAGATATTTTTTGCAGCGCGAACATCAAAAGAAAAAGAGACGATGAATGCACTTCTCTCGAAATCACACCTAATTATTTTTCCTTTTTTGAAAAATGATTTTTGGGCGTTATCGCAATTTATTTTTGTATAGAAAAGAAAAATCGATTTCAAAATAATCGGGGAAAAAAATTGAAAAAGACGCTTCAGATATGTTCGTTTCCCTACATTCAATGCTCAACATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACACAAGGAAGTCACACCTGTTACGCAAAGAAGGAAGATAGCTTATCAAAAATCAGAACACTGAAAATGTCTAGACTTTTCGAATAGGTGGACGACATTCAATGCKTTAAATTTTTTTCTAGAACTTTTGATAAGAAACGCATGATTAGAGGTCATTTGAGTTTTGAGATATCGAAAGCTAGTATACTAAACAAGATAAAAATTTATGTTAAAAGAAAATATGGCTCTCACTATGCGAGAGGGGGGGGGGGAGGAAAATAGGAAATCAGGAACTTCAGGACTAGAAATTTTCAATTTCCGCTCAATTTCTTCTTTGAAAAACTAAAAACTGGGCATAGAATTTTTGGTAGACACATTCTCGTTTGAGCACTGTTTTAATTACGGTGCGCGCACCCGCCCTTTTTATGTCTCTGTTTTTAGAGACCATAGAAGATCTAATTAAAATTAAGCGCCGGGACAATTAAATGGAGCAATGTTATATGTACAAGAGGAACAATTGAAAAAAAATTATTGCCAAACACGCAATGCTCAAATCTGGTTTCTCTGGTTCTGAAAGTAAGAGTCCAAATGTAAAGTGTGACTTGTAAGCTTTTCATGAGAAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCAGAACACTGAAAATGTCT</pcr_primer_p1>
		<pcr_primer_p2>AATTGAAAATTTCTAGTCCTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATCAGAACACTGAAAATGTCTAGACTTTTCGAATAGGTGGACGACATTCAATGCGTTAAATTTTTTTCTAGAACTTTTGATAAGAAACGCATGATTAGAGGTCATTTGAGTTTTGAGATATCGAAAGCTAGTATACTAAACAAGATAAAAATTTATGTTAAAAGAAAATATGGCTCTCACTATGCGAGAGGGGGGGGGGGAGGAAAATAGGAAATCAGGAACTTCAGGACTAGAAATTTTCAATT</canonical_amplicon>
		<polymorphic_amplicon>AAATCAGAACACTGAAAATGTCTAGACTTTTCGAATAGGTGGACGACATTCAATGCKTTAAATTTTTTTCTAGAACTTTTGATAAGAAACGCATGATTAGAGGTCATTTGAGTTTTGAGATATCGAAAGCTAGTATACTAAACAAGATAAAAATTTATGTTAAAAGAAAATATGGCTCTCACTATGCGAGAGGGGGGGGGGGAGGAAAATAGGAAATCAGGAACTTCAGGACTAGAAATTTTCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9011</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>138865</contig_pos>
        <strand></strand>
        <context>TAGCTTATCA[A/T]AAATCAGAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTACACAAGGAAGTCACACCTGTTACGCAAAGAAGGAAGATAGCTTATCA</left_flank>
        <right_flank>AAATCAGAACACTGAAAATGTCTAGACTTTTCGAATAGGTGGACGACATT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCGAATTTTGAGAAGAAGGCTCCGCCTTTTTTATTGCAGCTTATTAGAAACAATATTTTCGAGAGGAAAACATTGATACAGACAGACAATCGTAATAATAATTGTATAGGGGACAAAAAATGGAGAAAACTATCTGCCGATAAGTTGCGATTTGTCAAATTGTTCGAAAAAAAAACTTGAGAGAAGATATTTTTTGCAGCGCGAACATCAAAAGAAAAAGAGACGATGAATGCACTTCTCTCGAAATCACACCTAATTATTTTTCCTTTTTTGAAAAATGATTTTTGGGCGTTATCGCAATTTATTTTTGTATAGAAAAGAAAAATCGATTTCAAAATAATCGGGGAAAAAAATTGAAAAAGACGCTTCAGATATGTTCGTTTCCCTACATTCAATGCTCAACATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACACAAGGAAGTCACACCTGTTACGCAAAGAAGGAAGATAGCTTATCAAAAATCAGAACACTGAAAATGTCTAGACTTTTCGAATAGGTGGACGACATTCAATGCGTTAAATTTTTTTCTAGAACTTTTGATAAGAAACGCATGATTAGAGGTCATTTGAGTTTTGAGATATCGAAAGCTAGTATACTAAACAAGATAAAAATTTATGTTAAAAGAAAATATGGCTCTCACTATGCGAGAGGGGGGGGGGGAGGAAAATAGGAAATCAGGAACTTCAGGACTAGAAATTTTCAATTTCCGCTCAATTTCTTCTTTGAAAAACTAAAAACTGGGCATAGAATTTTTGGTAGACACATTCTCGTTTGAGCACTGTTTTAATTACGGTGCGCGCACCCGCCCTTTTTATGTCTCTGTTTTTAGAGACCATAGAAGATCTAATTAAAATTAAGCGCCGGGACAATTAAATGGAGCAATGTTATATGTACAAGAGGAACAATTGAAAAAAAATTATTGCCAAACACGCAATGCTCAAATCTGGTTTCTCTGGTT</canonical>
            <polymorphic>TGCGAATTTTGAGAAGAAGGCTCCGCCTTTTTTATTGCAGCTTATTAGAAACAATATTTTCGAGAGGAAAACATTGATACAGACAGACAATCGTAATAATAATTGTATAGGGGACAAAAAATGGAGAAAACTATCTGCCGATAAGTTGCGATTTGTCAAATTGTTCGAAAAAAAAACTTGAGAGAAGATATTTTTTGCAGCGCGAACATCAAAAGAAAAAGAGACGATGAATGCACTTCTCTCGAAATCACACCTAATTATTTTTCCTTTTTTGAAAAATGATTTTTGGGCGTTATCGCAATTTATTTTTGTATAGAAAAGAAAAATCGATTTCAAAATAATCGGGGAAAAAAATTGAAAAAGACGCTTCAGATATGTTCGTTTCCCTACATTCAATGCTCAACATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACACAAGGAAGTCACACCTGTTACGCAAAGAAGGAAGATAGCTTATCAWAAATCAGAACACTGAAAATGTCTAGACTTTTCGAATAGGTGGACGACATTCAATGCGTTAAATTTTTTTCTAGAACTTTTGATAAGAAACGCATGATTAGAGGTCATTTGAGTTTTGAGATATCGAAAGCTAGTATACTAAACAAGATAAAAATTTATGTTAAAAGAAAATATGGCTCTCACTATGCGAGAGGGGGGGGGGGAGGAAAATAGGAAATCAGGAACTTCAGGACTAGAAATTTTCAATTTCCGCTCAATTTCTTCTTTGAAAAACTAAAAACTGGGCATAGAATTTTTGGTAGACACATTCTCGTTTGAGCACTGTTTTAATTACGGTGCGCGCACCCGCCCTTTTTATGTCTCTGTTTTTAGAGACCATAGAAGATCTAATTAAAATTAAGCGCCGGGACAATTAAATGGAGCAATGTTATATGTACAAGAGGAACAATTGAAAAAAAATTATTGCCAAACACGCAATGCTCAAATCTGGTTTCTCTGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGAAAAAGACGCTTCAGATA</pcr_primer_p1>
		<pcr_primer_p2>CCTCTAATCATGCGTTTCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTGAAAAAGACGCTTCAGATATGTTCGTTTCCCTACATTCAATGCTCAACATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACACAAGGAAGTCACACCTGTTACGCAAAGAAGGAAGATAGCTTATCAAAAATCAGAACACTGAAAATGTCTAGACTTTTCGAATAGGTGGACGACATTCAATGCGTTAAATTTTTTTCTAGAACTTTTGATAAGAAACGCATGATTAGAGG</canonical_amplicon>
		<polymorphic_amplicon>ATTGAAAAAGACGCTTCAGATATGTTCGTTTCCCTACATTCAATGCTCAACATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACACAAGGAAGTCACACCTGTTACGCAAAGAAGGAAGATAGCTTATCAWAAATCAGAACACTGAAAATGTCTAGACTTTTCGAATAGGTGGACGACATTCAATGCGTTAAATTTTTTTCTAGAACTTTTGATAAGAAACGCATGATTAGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9012</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>138769</contig_pos>
        <strand></strand>
        <context>CAATGCTCAA[C/A]ATTTTTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATTGAAAAAGACGCTTCAGATATGTTCGTTTCCCTACATTCAATGCTCAA</left_flank>
        <right_flank>ATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGCATCAAAAAATGAGCAAAATACTCACGGTTTGTTTTTCAAAAATTTTGATAATAAACATTTATTTGAGAAAGTCAGTGTTATGGTATATGTTGCGAATTTTGAGAAGAAGGCTCCGCCTTTTTTATTGCAGCTTATTAGAAACAATATTTTCGAGAGGAAAACATTGATACAGACAGACAATCGTAATAATAATTGTATAGGGGACAAAAAATGGAGAAAACTATCTGCCGATAAGTTGCGATTTGTCAAATTGTTCGAAAAAAAAACTTGAGAGAAGATATTTTTTGCAGCGCGAACATCAAAAGAAAAAGAGACGATGAATGCACTTCTCTCGAAATCACACCTAATTATTTTTCCTTTTTTGAAAAATGATTTTTGGGCGTTATCGCAATTTATTTTTGTATAGAAAAGAAAAATCGATTTCAAAATAATCGGGGAAAAAAATTGAAAAAGACGCTTCAGATATGTTCGTTTCCCTACATTCAATGCTCAACATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACACAAGGAAGTCACACCTGTTACGCAAAGAAGGAAGATAGCTTATCAAAAATCAGAACACTGAAAATGTCTAGACTTTTCGAATAGGTGGACGACATTCAATGCGTTAAATTTTTTTCTAGAACTTTTGATAAGAAACGCATGATTAGAGGTCATTTGAGTTTTGAGATATCGAAAGCTAGTATACTAAACAAGATAAAAATTTATGTTAAAAGAAAATATGGCTCTCACTATGCGAGAGGGGGGGGGGGAGGAAAATAGGAAATCAGGAACTTCAGGACTAGAAATTTTCAATTTCCGCTCAATTTCTTCTTTGAAAAACTAAAAACTGGGCATAGAATTTTTGGTAGACACATTCTCGTTTGAGCACTGTTTTAATTACGGTGCGCGCACCCGCCCTTTTTATGTCTCTGTTTTTAGAGACCATAGAAGATCTAATTAAAATTAAGCGCC</canonical>
            <polymorphic>AAATGCATCAAAAAATGAGCAAAATACTCACGGTTTGTTTTTCAAAAATTTTGATAATAAACATTTATTTGAGAAAGTCAGTGTTATGGTATATGTTGCGAATTTTGAGAAGAAGGCTCCGCCTTTTTTATTGCAGCTTATTAGAAACAATATTTTCGAGAGGAAAACATTGATACAGACAGACAATCGTAATAATAATTGTATAGGGGACAAAAAATGGAGAAAACTATCTGCCGATAAGTTGCGATTTGTCAAATTGTTCGAAAAAAAAACTTGAGAGAAGATATTTTTTGCAGCGCGAACATCAAAAGAAAAAGAGACGATGAATGCACTTCTCTCGAAATCACACCTAATTATTTTTCCTTTTTTGAAAAATGATTTTTGGGCGTTATCGCAATTTATTTTTGTATAGAAAAGAAAAATCGATTTCAAAATAATCGGGGAAAAAAATTGAAAAAGACGCTTCAGATATGTTCGTTTCCCTACATTCAATGCTCAAMATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACACAAGGAAGTCACACCTGTTACGCAAAGAAGGAAGATAGCTTATCAAAAATCAGAACACTGAAAATGTCTAGACTTTTCGAATAGGTGGACGACATTCAATGCGTTAAATTTTTTTCTAGAACTTTTGATAAGAAACGCATGATTAGAGGTCATTTGAGTTTTGAGATATCGAAAGCTAGTATACTAAACAAGATAAAAATTTATGTTAAAAGAAAATATGGCTCTCACTATGCGAGAGGGGGGGGGGGAGGAAAATAGGAAATCAGGAACTTCAGGACTAGAAATTTTCAATTTCCGCTCAATTTCTTCTTTGAAAAACTAAAAACTGGGCATAGAATTTTTGGTAGACACATTCTCGTTTGAGCACTGTTTTAATTACGGTGCGCGCACCCGCCCTTTTTATGTCTCTGTTTTTAGAGACCATAGAAGATCTAATTAAAATTAAGCGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGAAATCACACCTAATTATTTT</pcr_primer_p1>
		<pcr_primer_p2>CTATCTTCCTTCTTTGCGTAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCGAAATCACACCTAATTATTTTTCCTTTTTTGAAAAATGATTTTTGGGCGTTATCGCAATTTATTTTTGTATAGAAAAGAAAAATCGATTTCAAAATAATCGGGGAAAAAAATTGAAAAAGACGCTTCAGATATGTTCGTTTCCCTACATTCAATGCTCAACATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACACAAGGAAGTCACACCTGTTACGCAAAGAAGGAAGATAG</canonical_amplicon>
		<polymorphic_amplicon>TCGAAATCACACCTAATTATTTTTCCTTTTTTGAAAAATGATTTTTGGGCGTTATCGCAATTTATTTTTGTATAGAAAAGAAAAATCGATTTCAAAATAATCGGGGAAAAAAATTGAAAAAGACGCTTCAGATATGTTCGTTTCCCTACATTCAATGCTCAAMATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACACAAGGAAGTCACACCTGTTACGCAAAGAAGGAAGATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9013</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>138745</contig_pos>
        <strand></strand>
        <context>CAGATATGTT[C/T]GTTTCCCTAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTCAAAATAATCGGGGAAAAAAATTGAAAAAGACGCTTCAGATATGTT</left_flank>
        <right_flank>GTTTCCCTACATTCAATGCTCAACATTTTTTTTTTCAAAATCTTGAGAGG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGTGATCGAGTGGACTTTAAAAAAATGCATCAAAAAATGAGCAAAATACTCACGGTTTGTTTTTCAAAAATTTTGATAATAAACATTTATTTGAGAAAGTCAGTGTTATGGTATATGTTGCGAATTTTGAGAAGAAGGCTCCGCCTTTTTTATTGCAGCTTATTAGAAACAATATTTTCGAGAGGAAAACATTGATACAGACAGACAATCGTAATAATAATTGTATAGGGGACAAAAAATGGAGAAAACTATCTGCCGATAAGTTGCGATTTGTCAAATTGTTCGAAAAAAAAACTTGAGAGAAGATATTTTTTGCAGCGCGAACATCAAAAGAAAAAGAGACGATGAATGCACTTCTCTCGAAATCACACCTAATTATTTTTCCTTTTTTGAAAAATGATTTTTGGGCGTTATCGCAATTTATTTTTGTATAGAAAAGAAAAATCGATTTCAAAATAATCGGGGAAAAAAATTGAAAAAGACGCTTCAGATATGTTCGTTTCCCTACATTCAATGCTCAACATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACACAAGGAAGTCACACCTGTTACGCAAAGAAGGAAGATAGCTTATCAAAAATCAGAACACTGAAAATGTCTAGACTTTTCGAATAGGTGGACGACATTCAATGCGTTAAATTTTTTTCTAGAACTTTTGATAAGAAACGCATGATTAGAGGTCATTTGAGTTTTGAGATATCGAAAGCTAGTATACTAAACAAGATAAAAATTTATGTTAAAAGAAAATATGGCTCTCACTATGCGAGAGGGGGGGGGGGAGGAAAATAGGAAATCAGGAACTTCAGGACTAGAAATTTTCAATTTCCGCTCAATTTCTTCTTTGAAAAACTAAAAACTGGGCATAGAATTTTTGGTAGACACATTCTCGTTTGAGCACTGTTTTAATTACGGTGCGCGCACCCGCCCTTTTTATGTCTCTGTTTTTAGAGACCATAG</canonical>
            <polymorphic>AATGTGATCGAGTGGACTTTAAAAAAATGCATCAAAAAATGAGCAAAATACTCACGGTTTGTTTTTCAAAAATTTTGATAATAAACATTTATTTGAGAAAGTCAGTGTTATGGTATATGTTGCGAATTTTGAGAAGAAGGCTCCGCCTTTTTTATTGCAGCTTATTAGAAACAATATTTTCGAGAGGAAAACATTGATACAGACAGACAATCGTAATAATAATTGTATAGGGGACAAAAAATGGAGAAAACTATCTGCCGATAAGTTGCGATTTGTCAAATTGTTCGAAAAAAAAACTTGAGAGAAGATATTTTTTGCAGCGCGAACATCAAAAGAAAAAGAGACGATGAATGCACTTCTCTCGAAATCACACCTAATTATTTTTCCTTTTTTGAAAAATGATTTTTGGGCGTTATCGCAATTTATTTTTGTATAGAAAAGAAAAATCGATTTCAAAATAATCGGGGAAAAAAATTGAAAAAGACGCTTCAGATATGTTYGTTTCCCTACATTCAATGCTCAACATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACACAAGGAAGTCACACCTGTTACGCAAAGAAGGAAGATAGCTTATCAAAAATCAGAACACTGAAAATGTCTAGACTTTTCGAATAGGTGGACGACATTCAATGCGTTAAATTTTTTTCTAGAACTTTTGATAAGAAACGCATGATTAGAGGTCATTTGAGTTTTGAGATATCGAAAGCTAGTATACTAAACAAGATAAAAATTTATGTTAAAAGAAAATATGGCTCTCACTATGCGAGAGGGGGGGGGGGAGGAAAATAGGAAATCAGGAACTTCAGGACTAGAAATTTTCAATTTCCGCTCAATTTCTTCTTTGAAAAACTAAAAACTGGGCATAGAATTTTTGGTAGACACATTCTCGTTTGAGCACTGTTTTAATTACGGTGCGCGCACCCGCCCTTTTTATGTCTCTGTTTTTAGAGACCATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGAAATCACACCTAATTATTTT</pcr_primer_p1>
		<pcr_primer_p2>CTATCTTCCTTCTTTGCGTAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCGAAATCACACCTAATTATTTTTCCTTTTTTGAAAAATGATTTTTGGGCGTTATCGCAATTTATTTTTGTATAGAAAAGAAAAATCGATTTCAAAATAATCGGGGAAAAAAATTGAAAAAGACGCTTCAGATATGTTCGTTTCCCTACATTCAATGCTCAACATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACACAAGGAAGTCACACCTGTTACGCAAAGAAGGAAGATAG</canonical_amplicon>
		<polymorphic_amplicon>TCGAAATCACACCTAATTATTTTTCCTTTTTTGAAAAATGATTTTTGGGCGTTATCGCAATTTATTTTTGTATAGAAAAGAAAAATCGATTTCAAAATAATCGGGGAAAAAAATTGAAAAAGACGCTTCAGATATGTTYGTTTCCCTACATTCAATGCTCAACATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACACAAGGAAGTCACACCTGTTACGCAAAGAAGGAAGATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9014</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>138656</contig_pos>
        <strand></strand>
        <context>GATTTTTKGG[C/T]GTTATCGCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCGAAATCACACCTAATTATTTTTCCTTTTTTGAAAAATGATTTTTGGG</left_flank>
        <right_flank>GTTATCGCAATTTATTTTTGTATAGAAAAGAAAAATCGATTTCAAAATAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGAAAATTCCCCAGTCGATGCGAGCAAAAACTAATTGCTGGCTACGAGCTGCTGCATCTCATGTCTAGAACCAAATTTTTTCTGAGAATGTGATCGAGTGGACTTTAAAAAAATGCATCAAAAAATGAGCAAAATACTCACGGTTTGTTTTTCAAAAATTTTGATAATAAACATTTATTTGAGAAAGTCAGTGTTATGGTATATGTTGCGAATTTTGAGAAGAAGGCTCCGCCTTTTTTATTGCAGCTTATTAGAAACAATATTTTCGAGAGGAAAACATTGATACAGACAGACAATCGTAATAATAATTGTATAGGGGACAAAAAATGGAGAAAACTATCTGCCGATAAGTTGCGATTTGTCAAATTGTTCGAAAAAAAAACTTGAGAGAAGATATTTTTTGCAGCGCGAACATCAAAAGAAAAAGAGACGATGAATGCACTTCTCTCGAAATCACACCTAATTATTTTTCCTTTTTTGAAAAATGATTTTTGGGCGTTATCGCAATTTATTTTTGTATAGAAAAGAAAAATCGATTTCAAAATAATCGGGGAAAAAAATTGAAAAAGACGCTTCAGATATGTTCGTTTCCCTACATTCAATGCTCAACATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACACAAGGAAGTCACACCTGTTACGCAAAGAAGGAAGATAGCTTATCAAAAATCAGAACACTGAAAATGTCTAGACTTTTCGAATAGGTGGACGACATTCAATGCGTTAAATTTTTTTCTAGAACTTTTGATAAGAAACGCATGATTAGAGGTCATTTGAGTTTTGAGATATCGAAAGCTAGTATACTAAACAAGATAAAAATTTATGTTAAAAGAAAATATGGCTCTCACTATGCGAGAGGGGGGGGGGGAGGAAAATAGGAAATCAGGAACTTCAGGACTAGAAATTTTCAATTTCCGCTCAATTTCTTCTTTGAAAAACTAAAAACTGGGCATAGAA</canonical>
            <polymorphic>AAAAGAAAATTCCCCAGTCGATGCGAGCAAAAACTAATTGCTGGCTACGAGCTGCTGCATCTCATGTCTAGAACCAAATTTTTTCTGAGAATGTGATCGAGTGGACTTTAAAAAAATGCATCAAAAAATGAGCAAAATACTCACGGTTTGTTTTTCAAAAATTTTGATAATAAACATTTATTTGAGAAAGTCAGTGTTATGGTATATGTTGCGAATTTTGAGAAGAAGGCTCCGCCTTTTTTATTGCAGCTTATTAGAAACAATATTTTCGAGAGGAAAACATTGATACAGACAGACAATCGTAATAATAATTGTATAGGGGACAAAAAATGGAGAAAACTATCTGCCGATAAGTTGCGATTTGTCAAATTGTTCGAAAAAAAAACTTGAGAGAAGATATTTTTTGCAGCGCGAACATCAAAAGAAAAAGAGACGATGAATGCACTTCTCTCGAAATCACACCTAATTATTTTTCCTTTTTTGAAAAATGATTTTTGGGYGTTATCGCAATTTATTTTTGTATAGAAAAGAAAAATCGATTTCAAAATAATCGGGGAAAAAAATTGAAAAAGACGCTTCAGATATGTTCGTTTCCCTACATTCAATGCTCAACATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACACAAGGAAGTCACACCTGTTACGCAAAGAAGGAAGATAGCTTATCAAAAATCAGAACACTGAAAATGTCTAGACTTTTCGAATAGGTGGACGACATTCAATGCGTTAAATTTTTTTCTAGAACTTTTGATAAGAAACGCATGATTAGAGGTCATTTGAGTTTTGAGATATCGAAAGCTAGTATACTAAACAAGATAAAAATTTATGTTAAAAGAAAATATGGCTCTCACTATGCGAGAGGGGGGGGGGGAGGAAAATAGGAAATCAGGAACTTCAGGACTAGAAATTTTCAATTTCCGCTCAATTTCTTCTTTGAAAAACTAAAAACTGGGCATAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATCAAAAGAAAAAGAGACGAT</pcr_primer_p1>
		<pcr_primer_p2>GTGTAGCTCTGGAATCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATCAAAAGAAAAAGAGACGATGAATGCACTTCTCTCGAAATCACACCTAATTATTTTTCCTTTTTTGAAAAATGATTTTTGGGCGTTATCGCAATTTATTTTTGTATAGAAAAGAAAAATCGATTTCAAAATAATCGGGGAAAAAAATTGAAAAAGACGCTTCAGATATGTTCGTTTCCCTACATTCAATGCTCAACATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACAC</canonical_amplicon>
		<polymorphic_amplicon>ACATCAAAAGAAAAAGAGACGATGAATGCACTTCTCTCGAAATCACACCTAATTATTTTTCCTTTTTTGAAAAATGATTTTTGGGYGTTATCGCAATTTATTTTTGTATAGAAAAGAAAAATCGATTTCAAAATAATCGGGGAAAAAAATTGAAAAAGACGCTTCAGATATGTTCGTTTCCCTACATTCAATGCTCAACATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9015</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>138653</contig_pos>
        <strand></strand>
        <context>AATGATTTTT[G/T]GGYGTTATCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTCTCGAAATCACACCTAATTATTTTTCCTTTTTTGAAAAATGATTTTT</left_flank>
        <right_flank>GGCGTTATCGCAATTTATTTTTGTATAGAAAAGAAAAATCGATTTCAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAAAAGAAAATTCCCCAGTCGATGCGAGCAAAAACTAATTGCTGGCTACGAGCTGCTGCATCTCATGTCTAGAACCAAATTTTTTCTGAGAATGTGATCGAGTGGACTTTAAAAAAATGCATCAAAAAATGAGCAAAATACTCACGGTTTGTTTTTCAAAAATTTTGATAATAAACATTTATTTGAGAAAGTCAGTGTTATGGTATATGTTGCGAATTTTGAGAAGAAGGCTCCGCCTTTTTTATTGCAGCTTATTAGAAACAATATTTTCGAGAGGAAAACATTGATACAGACAGACAATCGTAATAATAATTGTATAGGGGACAAAAAATGGAGAAAACTATCTGCCGATAAGTTGCGATTTGTCAAATTGTTCGAAAAAAAAACTTGAGAGAAGATATTTTTTGCAGCGCGAACATCAAAAGAAAAAGAGACGATGAATGCACTTCTCTCGAAATCACACCTAATTATTTTTCCTTTTTTGAAAAATGATTTTTGGGCGTTATCGCAATTTATTTTTGTATAGAAAAGAAAAATCGATTTCAAAATAATCGGGGAAAAAAATTGAAAAAGACGCTTCAGATATGTTCGTTTCCCTACATTCAATGCTCAACATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACACAAGGAAGTCACACCTGTTACGCAAAGAAGGAAGATAGCTTATCAAAAATCAGAACACTGAAAATGTCTAGACTTTTCGAATAGGTGGACGACATTCAATGCGTTAAATTTTTTTCTAGAACTTTTGATAAGAAACGCATGATTAGAGGTCATTTGAGTTTTGAGATATCGAAAGCTAGTATACTAAACAAGATAAAAATTTATGTTAAAAGAAAATATGGCTCTCACTATGCGAGAGGGGGGGGGGGAGGAAAATAGGAAATCAGGAACTTCAGGACTAGAAATTTTCAATTTCCGCTCAATTTCTTCTTTGAAAAACTAAAAACTGGGCATA</canonical>
            <polymorphic>TAAAAAAGAAAATTCCCCAGTCGATGCGAGCAAAAACTAATTGCTGGCTACGAGCTGCTGCATCTCATGTCTAGAACCAAATTTTTTCTGAGAATGTGATCGAGTGGACTTTAAAAAAATGCATCAAAAAATGAGCAAAATACTCACGGTTTGTTTTTCAAAAATTTTGATAATAAACATTTATTTGAGAAAGTCAGTGTTATGGTATATGTTGCGAATTTTGAGAAGAAGGCTCCGCCTTTTTTATTGCAGCTTATTAGAAACAATATTTTCGAGAGGAAAACATTGATACAGACAGACAATCGTAATAATAATTGTATAGGGGACAAAAAATGGAGAAAACTATCTGCCGATAAGTTGCGATTTGTCAAATTGTTCGAAAAAAAAACTTGAGAGAAGATATTTTTTGCAGCGCGAACATCAAAAGAAAAAGAGACGATGAATGCACTTCTCTCGAAATCACACCTAATTATTTTTCCTTTTTTGAAAAATGATTTTTKGGCGTTATCGCAATTTATTTTTGTATAGAAAAGAAAAATCGATTTCAAAATAATCGGGGAAAAAAATTGAAAAAGACGCTTCAGATATGTTCGTTTCCCTACATTCAATGCTCAACATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACACAAGGAAGTCACACCTGTTACGCAAAGAAGGAAGATAGCTTATCAAAAATCAGAACACTGAAAATGTCTAGACTTTTCGAATAGGTGGACGACATTCAATGCGTTAAATTTTTTTCTAGAACTTTTGATAAGAAACGCATGATTAGAGGTCATTTGAGTTTTGAGATATCGAAAGCTAGTATACTAAACAAGATAAAAATTTATGTTAAAAGAAAATATGGCTCTCACTATGCGAGAGGGGGGGGGGGAGGAAAATAGGAAATCAGGAACTTCAGGACTAGAAATTTTCAATTTCCGCTCAATTTCTTCTTTGAAAAACTAAAAACTGGGCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATCAAAAGAAAAAGAGACGAT</pcr_primer_p1>
		<pcr_primer_p2>GTGTAGCTCTGGAATCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATCAAAAGAAAAAGAGACGATGAATGCACTTCTCTCGAAATCACACCTAATTATTTTTCCTTTTTTGAAAAATGATTTTTGGGCGTTATCGCAATTTATTTTTGTATAGAAAAGAAAAATCGATTTCAAAATAATCGGGGAAAAAAATTGAAAAAGACGCTTCAGATATGTTCGTTTCCCTACATTCAATGCTCAACATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACAC</canonical_amplicon>
		<polymorphic_amplicon>ACATCAAAAGAAAAAGAGACGATGAATGCACTTCTCTCGAAATCACACCTAATTATTTTTCCTTTTTTGAAAAATGATTTTTKGGCGTTATCGCAATTTATTTTTGTATAGAAAAGAAAAATCGATTTCAAAATAATCGGGGAAAAAAATTGAAAAAGACGCTTCAGATATGTTCGTTTCCCTACATTCAATGCTCAACATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9016</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>138636</contig_pos>
        <strand></strand>
        <context>TTTTTCCTYT[T/A]TTGAAAAATG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GAGACGATGAATGCACTTCTCTCGAAATCACACCTAATTATTTTTCCTTT</left_flank>
        <right_flank>TTGAAAAATGATTTTTGGGCGTTATCGCAATTTATTTTTGTATAGAAAAG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTGTGGTTTGATCCATAAAAAAGAAAATTCCCCAGTCGATGCGAGCAAAAACTAATTGCTGGCTACGAGCTGCTGCATCTCATGTCTAGAACCAAATTTTTTCTGAGAATGTGATCGAGTGGACTTTAAAAAAATGCATCAAAAAATGAGCAAAATACTCACGGTTTGTTTTTCAAAAATTTTGATAATAAACATTTATTTGAGAAAGTCAGTGTTATGGTATATGTTGCGAATTTTGAGAAGAAGGCTCCGCCTTTTTTATTGCAGCTTATTAGAAACAATATTTTCGAGAGGAAAACATTGATACAGACAGACAATCGTAATAATAATTGTATAGGGGACAAAAAATGGAGAAAACTATCTGCCGATAAGTTGCGATTTGTCAAATTGTTCGAAAAAAAAACTTGAGAGAAGATATTTTTTGCAGCGCGAACATCAAAAGAAAAAGAGACGATGAATGCACTTCTCTCGAAATCACACCTAATTATTTTTCCTTTTTTGAAAAATGATTTTTGGGCGTTATCGCAATTTATTTTTGTATAGAAAAGAAAAATCGATTTCAAAATAATCGGGGAAAAAAATTGAAAAAGACGCTTCAGATATGTTCGTTTCCCTACATTCAATGCTCAACATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACACAAGGAAGTCACACCTGTTACGCAAAGAAGGAAGATAGCTTATCAAAAATCAGAACACTGAAAATGTCTAGACTTTTCGAATAGGTGGACGACATTCAATGCGTTAAATTTTTTTCTAGAACTTTTGATAAGAAACGCATGATTAGAGGTCATTTGAGTTTTGAGATATCGAAAGCTAGTATACTAAACAAGATAAAAATTTATGTTAAAAGAAAATATGGCTCTCACTATGCGAGAGGGGGGGGGGGAGGAAAATAGGAAATCAGGAACTTCAGGACTAGAAATTTTCAATTTCCGCTCAATTTCTTCTTTGAAAA</canonical>
            <polymorphic>CTGTGTGGTTTGATCCATAAAAAAGAAAATTCCCCAGTCGATGCGAGCAAAAACTAATTGCTGGCTACGAGCTGCTGCATCTCATGTCTAGAACCAAATTTTTTCTGAGAATGTGATCGAGTGGACTTTAAAAAAATGCATCAAAAAATGAGCAAAATACTCACGGTTTGTTTTTCAAAAATTTTGATAATAAACATTTATTTGAGAAAGTCAGTGTTATGGTATATGTTGCGAATTTTGAGAAGAAGGCTCCGCCTTTTTTATTGCAGCTTATTAGAAACAATATTTTCGAGAGGAAAACATTGATACAGACAGACAATCGTAATAATAATTGTATAGGGGACAAAAAATGGAGAAAACTATCTGCCGATAAGTTGCGATTTGTCAAATTGTTCGAAAAAAAAACTTGAGAGAAGATATTTTTTGCAGCGCGAACATCAAAAGAAAAAGAGACGATGAATGCACTTCTCTCGAAATCACACCTAATTATTTTTCCTTTWTTGAAAAATGATTTTTGGGCGTTATCGCAATTTATTTTTGTATAGAAAAGAAAAATCGATTTCAAAATAATCGGGGAAAAAAATTGAAAAAGACGCTTCAGATATGTTCGTTTCCCTACATTCAATGCTCAACATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACACAAGGAAGTCACACCTGTTACGCAAAGAAGGAAGATAGCTTATCAAAAATCAGAACACTGAAAATGTCTAGACTTTTCGAATAGGTGGACGACATTCAATGCGTTAAATTTTTTTCTAGAACTTTTGATAAGAAACGCATGATTAGAGGTCATTTGAGTTTTGAGATATCGAAAGCTAGTATACTAAACAAGATAAAAATTTATGTTAAAAGAAAATATGGCTCTCACTATGCGAGAGGGGGGGGGGGAGGAAAATAGGAAATCAGGAACTTCAGGACTAGAAATTTTCAATTTCCGCTCAATTTCTTCTTTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATCAAAAGAAAAAGAGACGAT</pcr_primer_p1>
		<pcr_primer_p2>GTGTAGCTCTGGAATCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATCAAAAGAAAAAGAGACGATGAATGCACTTCTCTCGAAATCACACCTAATTATTTTTCCTTTTTTGAAAAATGATTTTTGGGCGTTATCGCAATTTATTTTTGTATAGAAAAGAAAAATCGATTTCAAAATAATCGGGGAAAAAAATTGAAAAAGACGCTTCAGATATGTTCGTTTCCCTACATTCAATGCTCAACATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACAC</canonical_amplicon>
		<polymorphic_amplicon>ACATCAAAAGAAAAAGAGACGATGAATGCACTTCTCTCGAAATCACACCTAATTATTTTTCCTTTWTTGAAAAATGATTTTTGGGCGTTATCGCAATTTATTTTTGTATAGAAAAGAAAAATCGATTTCAAAATAATCGGGGAAAAAAATTGAAAAAGACGCTTCAGATATGTTCGTTTCCCTACATTCAATGCTCAACATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9017</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>138634</contig_pos>
        <strand></strand>
        <context>TATTTTTCCT[T/C]TWTTGAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAGAGACGATGAATGCACTTCTCTCGAAATCACACCTAATTATTTTTCCT</left_flank>
        <right_flank>TTTTGAAAAATGATTTTTGGGCGTTATCGCAATTTATTTTTGTATAGAAA</right_flank>
        <qual_score>35</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTGTGTGGTTTGATCCATAAAAAAGAAAATTCCCCAGTCGATGCGAGCAAAAACTAATTGCTGGCTACGAGCTGCTGCATCTCATGTCTAGAACCAAATTTTTTCTGAGAATGTGATCGAGTGGACTTTAAAAAAATGCATCAAAAAATGAGCAAAATACTCACGGTTTGTTTTTCAAAAATTTTGATAATAAACATTTATTTGAGAAAGTCAGTGTTATGGTATATGTTGCGAATTTTGAGAAGAAGGCTCCGCCTTTTTTATTGCAGCTTATTAGAAACAATATTTTCGAGAGGAAAACATTGATACAGACAGACAATCGTAATAATAATTGTATAGGGGACAAAAAATGGAGAAAACTATCTGCCGATAAGTTGCGATTTGTCAAATTGTTCGAAAAAAAAACTTGAGAGAAGATATTTTTTGCAGCGCGAACATCAAAAGAAAAAGAGACGATGAATGCACTTCTCTCGAAATCACACCTAATTATTTTTCCTTTTTTGAAAAATGATTTTTGGGCGTTATCGCAATTTATTTTTGTATAGAAAAGAAAAATCGATTTCAAAATAATCGGGGAAAAAAATTGAAAAAGACGCTTCAGATATGTTCGTTTCCCTACATTCAATGCTCAACATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACACAAGGAAGTCACACCTGTTACGCAAAGAAGGAAGATAGCTTATCAAAAATCAGAACACTGAAAATGTCTAGACTTTTCGAATAGGTGGACGACATTCAATGCGTTAAATTTTTTTCTAGAACTTTTGATAAGAAACGCATGATTAGAGGTCATTTGAGTTTTGAGATATCGAAAGCTAGTATACTAAACAAGATAAAAATTTATGTTAAAAGAAAATATGGCTCTCACTATGCGAGAGGGGGGGGGGGAGGAAAATAGGAAATCAGGAACTTCAGGACTAGAAATTTTCAATTTCCGCTCAATTTCTTCTTTGAA</canonical>
            <polymorphic>TGCTGTGTGGTTTGATCCATAAAAAAGAAAATTCCCCAGTCGATGCGAGCAAAAACTAATTGCTGGCTACGAGCTGCTGCATCTCATGTCTAGAACCAAATTTTTTCTGAGAATGTGATCGAGTGGACTTTAAAAAAATGCATCAAAAAATGAGCAAAATACTCACGGTTTGTTTTTCAAAAATTTTGATAATAAACATTTATTTGAGAAAGTCAGTGTTATGGTATATGTTGCGAATTTTGAGAAGAAGGCTCCGCCTTTTTTATTGCAGCTTATTAGAAACAATATTTTCGAGAGGAAAACATTGATACAGACAGACAATCGTAATAATAATTGTATAGGGGACAAAAAATGGAGAAAACTATCTGCCGATAAGTTGCGATTTGTCAAATTGTTCGAAAAAAAAACTTGAGAGAAGATATTTTTTGCAGCGCGAACATCAAAAGAAAAAGAGACGATGAATGCACTTCTCTCGAAATCACACCTAATTATTTTTCCTYTTTTGAAAAATGATTTTTGGGCGTTATCGCAATTTATTTTTGTATAGAAAAGAAAAATCGATTTCAAAATAATCGGGGAAAAAAATTGAAAAAGACGCTTCAGATATGTTCGTTTCCCTACATTCAATGCTCAACATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACACAAGGAAGTCACACCTGTTACGCAAAGAAGGAAGATAGCTTATCAAAAATCAGAACACTGAAAATGTCTAGACTTTTCGAATAGGTGGACGACATTCAATGCGTTAAATTTTTTTCTAGAACTTTTGATAAGAAACGCATGATTAGAGGTCATTTGAGTTTTGAGATATCGAAAGCTAGTATACTAAACAAGATAAAAATTTATGTTAAAAGAAAATATGGCTCTCACTATGCGAGAGGGGGGGGGGGAGGAAAATAGGAAATCAGGAACTTCAGGACTAGAAATTTTCAATTTCCGCTCAATTTCTTCTTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATCAAAAGAAAAAGAGACGAT</pcr_primer_p1>
		<pcr_primer_p2>GTGTAGCTCTGGAATCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATCAAAAGAAAAAGAGACGATGAATGCACTTCTCTCGAAATCACACCTAATTATTTTTCCTTTTTTGAAAAATGATTTTTGGGCGTTATCGCAATTTATTTTTGTATAGAAAAGAAAAATCGATTTCAAAATAATCGGGGAAAAAAATTGAAAAAGACGCTTCAGATATGTTCGTTTCCCTACATTCAATGCTCAACATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACAC</canonical_amplicon>
		<polymorphic_amplicon>ACATCAAAAGAAAAAGAGACGATGAATGCACTTCTCTCGAAATCACACCTAATTATTTTTCCTYTTTTGAAAAATGATTTTTGGGCGTTATCGCAATTTATTTTTGTATAGAAAAGAAAAATCGATTTCAAAATAATCGGGGAAAAAAATTGAAAAAGACGCTTCAGATATGTTCGTTTCCCTACATTCAATGCTCAACATTTTTTTTTTCAAAATCTTGAGAGGCACAAAAAGGATTCCAGAGCTACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9018</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>178018</contig_pos>
        <strand>+</strand>
        <context>ACTTTCTGCT[C/T]TGTGTTGAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCAAAAAAAAATTACTCACCATTTTGAAATTTTTGTTAAACTTTCTGCT</left_flank>
        <right_flank>TGTGTTGAGTGACCTTAAAACGTTCCGAAGACAAATCATATTTTTTGCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACAGGCTGAAAAGGAAGTTTGTCAAGAACCAACGAATATCAGAAAAACTGTTAATTTTCAAAAAATTATGTGAGTAAAAAAAATGTTTAATGTAGGTCTATTGGTATCTTGACAACCGAGCTCCAGACTCCTGAAAATTGTCAACATGACCGAAAATAAATTGAAAAATCCTTTTTTGTATATCTTATTGAACGGTACTATATGTTTTTGGAAATACTTTTCTCAGTAATTTCACTGTTAACCCCAACACCTGAATTCTGGAATTCTAATTATTCCCTATTCCCCCTGTCTTGTACTATCACTGGTTTTAGTGCCACCAACCCTCCCATCCAAATTGTTTCAATTTTTAACCGCACTAGCATATATTTTACGGTCGTTAAGTGTTATCTTACTCCTTTTTCCCTCTGTCATTTCGTTTTAGCCAGCCGTTTGACGCCACTGATAACTAGCAAAAAAAAATTACTCACCATTTTGAAATTTTTGTTAAACTTTCTGCTTTGTGTTGAGTGACCTTAAAACGTTCCGAAGACAAATCATATTTTTTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTTTTGCTAAACTTTTGATTCTCTCACCGATCACTCTGTTTCCCCGGATCTTACAAAAAACACTGTTTTTAGATGTTCCGTCCGACGTTTGACACTTTTCGACCGCCGAACAGTGAC</canonical>
            <polymorphic>GAACAGGCTGAAAAGGAAGTTTGTCAAGAACCAACGAATATCAGAAAAACTGTTAATTTTCAAAAAATTATGTGAGTAAAAAAAATGTTTAATGTAGGTCTATTGGTATCTTGACAACCGAGCTCCAGACTCCTGAAAATTGTCAACATGACCGAAAATAAATTGAAAAATCCTTTTTTGTATATCTTATTGAACGGTACTATATGTTTTTGGAAATACTTTTCTCAGTAATTTCACTGTTAACCCCAACACCTGAATTCTGGAATTCTAATTATTCCCTATTCCCCCTGTCTTGTACTATCACTGGTTTTAGTGCCACCAACCCTCCCATCCAAATTGTTTCAATTTTTAACCGCACTAGCATATATTTTACGGTCGTTAAGTGTTATCTTACTCCTTTTTCCCTCTGTCATTTCGTTTTAGCCAGCCGTTTGACGCCACTGATAACTAGCAAAAAAAAATTACTCACCATTTTGAAATTTTTGTTAAACTTTCTGCTYTGTGTTGAGTGACCTTAAAACGTTCCGAAGACAAATCATATTTTTTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTTTTGCTAAACTTTTGATTCTCTCACCGATCACTCTGTTTCCCCGGATCTTACAAAAAACACTGTTTTTAGATGTTCCGTCCGACGTTTGACACTTTTCGACCGCCGAACAGTGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTGACGCCACTGATAACTA</pcr_primer_p1>
		<pcr_primer_p2>AAAAACTTACATCAACCACTGTC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>GTTTGACGCCACTGATAACTAGCAAAAAAAAATTACTCACCATTTTGAAATTTTTGTTAAACTTTCTGCTTTGTGTTGAGTGACCTTAAAACGTTCCGAAGACAAATCATATTTTTTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GTTTGACGCCACTGATAACTAGCAAAAAAAAATTACTCACCATTTTGAAATTTTTGTTAAACTTTCTGCTYTGTGTTGAGTGACCTTAAAACGTTCCGAAGACAAATCATATTTTTTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9019</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>178030</contig_pos>
        <strand>+</strand>
        <context>GTGTTGAGTG[A/C]CCTTAAAACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTACTCACCATTTTGAAATTTTTGTTAAACTTTCTGCTTTGTGTTGAGTG</left_flank>
        <right_flank>CCTTAAAACGTTCCGAAGACAAATCATATTTTTTGCAGAAGATACTGTCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGGAAGTTTGTCAAGAACCAACGAATATCAGAAAAACTGTTAATTTTCAAAAAATTATGTGAGTAAAAAAAATGTTTAATGTAGGTCTATTGGTATCTTGACAACCGAGCTCCAGACTCCTGAAAATTGTCAACATGACCGAAAATAAATTGAAAAATCCTTTTTTGTATATCTTATTGAACGGTACTATATGTTTTTGGAAATACTTTTCTCAGTAATTTCACTGTTAACCCCAACACCTGAATTCTGGAATTCTAATTATTCCCTATTCCCCCTGTCTTGTACTATCACTGGTTTTAGTGCCACCAACCCTCCCATCCAAATTGTTTCAATTTTTAACCGCACTAGCATATATTTTACGGTCGTTAAGTGTTATCTTACTCCTTTTTCCCTCTGTCATTTCGTTTTAGCCAGCCGTTTGACGCCACTGATAACTAGCAAAAAAAAATTACTCACCATTTTGAAATTTTTGTTAAACTTTCTGCTTTGTGTTGAGTGACCTTAAAACGTTCCGAAGACAAATCATATTTTTTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTTTTGCTAAACTTTTGATTCTCTCACCGATCACTCTGTTTCCCCGGATCTTACAAAAAACACTGTTTTTAGATGTTCCGTCCGACGTTTGACACTTTTCGACCGCCGAACAGTGACAGCTCGACTTTC</canonical>
            <polymorphic>AAGGAAGTTTGTCAAGAACCAACGAATATCAGAAAAACTGTTAATTTTCAAAAAATTATGTGAGTAAAAAAAATGTTTAATGTAGGTCTATTGGTATCTTGACAACCGAGCTCCAGACTCCTGAAAATTGTCAACATGACCGAAAATAAATTGAAAAATCCTTTTTTGTATATCTTATTGAACGGTACTATATGTTTTTGGAAATACTTTTCTCAGTAATTTCACTGTTAACCCCAACACCTGAATTCTGGAATTCTAATTATTCCCTATTCCCCCTGTCTTGTACTATCACTGGTTTTAGTGCCACCAACCCTCCCATCCAAATTGTTTCAATTTTTAACCGCACTAGCATATATTTTACGGTCGTTAAGTGTTATCTTACTCCTTTTTCCCTCTGTCATTTCGTTTTAGCCAGCCGTTTGACGCCACTGATAACTAGCAAAAAAAAATTACTCACCATTTTGAAATTTTTGTTAAACTTTCTGCTTTGTGTTGAGTGMCCTTAAAACGTTCCGAAGACAAATCATATTTTTTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTTTTGCTAAACTTTTGATTCTCTCACCGATCACTCTGTTTCCCCGGATCTTACAAAAAACACTGTTTTTAGATGTTCCGTCCGACGTTTGACACTTTTCGACCGCCGAACAGTGACAGCTCGACTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>496 487 17</canonical_bands>
                <polymorphic_bands>983 17</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>496 487 17</canonical_bands>
                <polymorphic_bands>983 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTGACGCCACTGATAACTA</pcr_primer_p1>
		<pcr_primer_p2>AAAAACTTACATCAACCACTGTC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>GTTTGACGCCACTGATAACTAGCAAAAAAAAATTACTCACCATTTTGAAATTTTTGTTAAACTTTCTGCTTTGTGTTGAGTGACCTTAAAACGTTCCGAAGACAAATCATATTTTTTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GTTTGACGCCACTGATAACTAGCAAAAAAAAATTACTCACCATTTTGAAATTTTTGTTAAACTTTCTGCTTTGTGTTGAGTGMCCTTAAAACGTTCCGAAGACAAATCATATTTTTTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9020</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>178181</contig_pos>
        <strand>+</strand>
        <context>TAAGTTTTTT[G/T]AGCtttaaat</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTT</left_flank>
        <right_flank>AGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAAATCCTTTTTTGTATATCTTATTGAACGGTACTATATGTTTTTGGAAATACTTTTCTCAGTAATTTCACTGTTAACCCCAACACCTGAATTCTGGAATTCTAATTATTCCCTATTCCCCCTGTCTTGTACTATCACTGGTTTTAGTGCCACCAACCCTCCCATCCAAATTGTTTCAATTTTTAACCGCACTAGCATATATTTTACGGTCGTTAAGTGTTATCTTACTCCTTTTTCCCTCTGTCATTTCGTTTTAGCCAGCCGTTTGACGCCACTGATAACTAGCAAAAAAAAATTACTCACCATTTTGAAATTTTTGTTAAACTTTCTGCTTTGTGTTGAGTGACCTTAAAACGTTCCGAAGACAAATCATATTTTTTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTTTTGCTAAACTTTTGATTCTCTCACCGATCACTCTGTTTCCCCGGATCTTACAAAAAACACTGTTTTTAGATGTTCCGTCCGACGTTTGACACTTTTCGACCGCCGAACAGTGACAGCTCGACTTTCCGTGCCAGCCAAAGCAGGTATGTTTGTTTTTCGGAAGAAAATTTTTCGTTTGGAGGAGTGTGGTGTTCGGTTTTGAAAAGTATGGATCAGAAATTTCCTTGGATTTTGGGGCATAAGTTCTTTGAAAAAATGCGATTCAAATTTTCAAAGA</canonical>
            <polymorphic>TGAAAAATCCTTTTTTGTATATCTTATTGAACGGTACTATATGTTTTTGGAAATACTTTTCTCAGTAATTTCACTGTTAACCCCAACACCTGAATTCTGGAATTCTAATTATTCCCTATTCCCCCTGTCTTGTACTATCACTGGTTTTAGTGCCACCAACCCTCCCATCCAAATTGTTTCAATTTTTAACCGCACTAGCATATATTTTACGGTCGTTAAGTGTTATCTTACTCCTTTTTCCCTCTGTCATTTCGTTTTAGCCAGCCGTTTGACGCCACTGATAACTAGCAAAAAAAAATTACTCACCATTTTGAAATTTTTGTTAAACTTTCTGCTTTGTGTTGAGTGACCTTAAAACGTTCCGAAGACAAATCATATTTTTTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTKAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTTTTGCTAAACTTTTGATTCTCTCACCGATCACTCTGTTTCCCCGGATCTTACAAAAAACACTGTTTTTAGATGTTCCGTCCGACGTTTGACACTTTTCGACCGCCGAACAGTGACAGCTCGACTTTCCGTGCCAGCCAAAGCAGGTATGTTTGTTTTTCGGAAGAAAATTTTTCGTTTGGAGGAGTGTGGTGTTCGGTTTTGAAAAGTATGGATCAGAAATTTCCTTGGATTTTGGGGCATAAGTTCTTTGAAAAAATGCGATTCAAATTTTCAAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGCAGAAGATACTGTCTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>CAGTCTTGAGTGAAAAATGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>TTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTG</canonical_amplicon>
		<polymorphic_amplicon>TTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTKAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9029</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>178193</contig_pos>
        <strand></strand>
        <context>GCtttaaatt[A/T]aaaaaaatat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATT</left_flank>
        <right_flank>AAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGTATATCTTATTGAACGGTACTATATGTTTTTGGAAATACTTTTCTCAGTAATTTCACTGTTAACCCCAACACCTGAATTCTGGAATTCTAATTATTCCCTATTCCCCCTGTCTTGTACTATCACTGGTTTTAGTGCCACCAACCCTCCCATCCAAATTGTTTCAATTTTTAACCGCACTAGCATATATTTTACGGTCGTTAAGTGTTATCTTACTCCTTTTTCCCTCTGTCATTTCGTTTTAGCCAGCCGTTTGACGCCACTGATAACTAGCAAAAAAAAATTACTCACCATTTTGAAATTTTTGTTAAACTTTCTGCTTTGTGTTGAGTGACCTTAAAACGTTCCGAAGACAAATCATATTTTTTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTTTTGCTAAACTTTTGATTCTCTCACCGATCACTCTGTTTCCCCGGATCTTACAAAAAACACTGTTTTTAGATGTTCCGTCCGACGTTTGACACTTTTCGACCGCCGAACAGTGACAGCTCGACTTTCCGTGCCAGCCAAAGCAGGTATGTTTGTTTTTCGGAAGAAAATTTTTCGTTTGGAGGAGTGTGGTGTTCGGTTTTGAAAAGTATGGATCAGAAATTTCCTTGGATTTTGGGGCATAAGTTCTTTGAAAAAATGCGATTCAAATTTTCAAAGACACATGAAAGAC</canonical>
            <polymorphic>TTTTGTATATCTTATTGAACGGTACTATATGTTTTTGGAAATACTTTTCTCAGTAATTTCACTGTTAACCCCAACACCTGAATTCTGGAATTCTAATTATTCCCTATTCCCCCTGTCTTGTACTATCACTGGTTTTAGTGCCACCAACCCTCCCATCCAAATTGTTTCAATTTTTAACCGCACTAGCATATATTTTACGGTCGTTAAGTGTTATCTTACTCCTTTTTCCCTCTGTCATTTCGTTTTAGCCAGCCGTTTGACGCCACTGATAACTAGCAAAAAAAAATTACTCACCATTTTGAAATTTTTGTTAAACTTTCTGCTTTGTGTTGAGTGACCTTAAAACGTTCCGAAGACAAATCATATTTTTTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTWAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTTTTGCTAAACTTTTGATTCTCTCACCGATCACTCTGTTTCCCCGGATCTTACAAAAAACACTGTTTTTAGATGTTCCGTCCGACGTTTGACACTTTTCGACCGCCGAACAGTGACAGCTCGACTTTCCGTGCCAGCCAAAGCAGGTATGTTTGTTTTTCGGAAGAAAATTTTTCGTTTGGAGGAGTGTGGTGTTCGGTTTTGAAAAGTATGGATCAGAAATTTCCTTGGATTTTGGGGCATAAGTTCTTTGAAAAAATGCGATTCAAATTTTCAAAGACACATGAAAGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>345 153 109 107 95 65 62 30 29 5</canonical_bands>
                <polymorphic_bands>345 153 109 107 95 67 65 30 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGCAGAAGATACTGTCTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>CAGTCTTGAGTGAAAAATGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>TTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTG</canonical_amplicon>
		<polymorphic_amplicon>TTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTWAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9051</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>178227</contig_pos>
        <strand>+</strand>
        <context>CTCGCTTCAA[A/T]AATTGCTAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAA</left_flank>
        <right_flank>AATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGAAATACTTTTCTCAGTAATTTCACTGTTAACCCCAACACCTGAATTCTGGAATTCTAATTATTCCCTATTCCCCCTGTCTTGTACTATCACTGGTTTTAGTGCCACCAACCCTCCCATCCAAATTGTTTCAATTTTTAACCGCACTAGCATATATTTTACGGTCGTTAAGTGTTATCTTACTCCTTTTTCCCTCTGTCATTTCGTTTTAGCCAGCCGTTTGACGCCACTGATAACTAGCAAAAAAAAATTACTCACCATTTTGAAATTTTTGTTAAACTTTCTGCTTTGTGTTGAGTGACCTTAAAACGTTCCGAAGACAAATCATATTTTTTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTTTTGCTAAACTTTTGATTCTCTCACCGATCACTCTGTTTCCCCGGATCTTACAAAAAACACTGTTTTTAGATGTTCCGTCCGACGTTTGACACTTTTCGACCGCCGAACAGTGACAGCTCGACTTTCCGTGCCAGCCAAAGCAGGTATGTTTGTTTTTCGGAAGAAAATTTTTCGTTTGGAGGAGTGTGGTGTTCGGTTTTGAAAAGTATGGATCAGAAATTTCCTTGGATTTTGGGGCATAAGTTCTTTGAAAAAATGCGATTCAAATTTTCAAAGACACATGAAAGACAAAGCGAACAGAATTAATTCGAGTTCAGTTCACA</canonical>
            <polymorphic>TTGGAAATACTTTTCTCAGTAATTTCACTGTTAACCCCAACACCTGAATTCTGGAATTCTAATTATTCCCTATTCCCCCTGTCTTGTACTATCACTGGTTTTAGTGCCACCAACCCTCCCATCCAAATTGTTTCAATTTTTAACCGCACTAGCATATATTTTACGGTCGTTAAGTGTTATCTTACTCCTTTTTCCCTCTGTCATTTCGTTTTAGCCAGCCGTTTGACGCCACTGATAACTAGCAAAAAAAAATTACTCACCATTTTGAAATTTTTGTTAAACTTTCTGCTTTGTGTTGAGTGACCTTAAAACGTTCCGAAGACAAATCATATTTTTTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAWAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTTTTGCTAAACTTTTGATTCTCTCACCGATCACTCTGTTTCCCCGGATCTTACAAAAAACACTGTTTTTAGATGTTCCGTCCGACGTTTGACACTTTTCGACCGCCGAACAGTGACAGCTCGACTTTCCGTGCCAGCCAAAGCAGGTATGTTTGTTTTTCGGAAGAAAATTTTTCGTTTGGAGGAGTGTGGTGTTCGGTTTTGAAAAGTATGGATCAGAAATTTCCTTGGATTTTGGGGCATAAGTTCTTTGAAAAAATGCGATTCAAATTTTCAAAGACACATGAAAGACAAAGCGAACAGAATTAATTCGAGTTCAGTTCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGACAGTGGTTGATGTAAGTT</pcr_primer_p1>
		<pcr_primer_p2>AAAGTGATTCATCGAAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTT</canonical_amplicon>
		<polymorphic_amplicon>CGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAWAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9054</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>178239</contig_pos>
        <strand>+</strand>
        <context>ATTGCTAAAT[A/T]MYGWGCTYGY</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAAT</left_flank>
        <right_flank>TCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTCAGTAATTTCACTGTTAACCCCAACACCTGAATTCTGGAATTCTAATTATTCCCTATTCCCCCTGTCTTGTACTATCACTGGTTTTAGTGCCACCAACCCTCCCATCCAAATTGTTTCAATTTTTAACCGCACTAGCATATATTTTACGGTCGTTAAGTGTTATCTTACTCCTTTTTCCCTCTGTCATTTCGTTTTAGCCAGCCGTTTGACGCCACTGATAACTAGCAAAAAAAAATTACTCACCATTTTGAAATTTTTGTTAAACTTTCTGCTTTGTGTTGAGTGACCTTAAAACGTTCCGAAGACAAATCATATTTTTTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTTTTGCTAAACTTTTGATTCTCTCACCGATCACTCTGTTTCCCCGGATCTTACAAAAAACACTGTTTTTAGATGTTCCGTCCGACGTTTGACACTTTTCGACCGCCGAACAGTGACAGCTCGACTTTCCGTGCCAGCCAAAGCAGGTATGTTTGTTTTTCGGAAGAAAATTTTTCGTTTGGAGGAGTGTGGTGTTCGGTTTTGAAAAGTATGGATCAGAAATTTCCTTGGATTTTGGGGCATAAGTTCTTTGAAAAAATGCGATTCAAATTTTCAAAGACACATGAAAGACAAAGCGAACAGAATTAATTCGAGTTCAGTTCACAGCTAATCGTTTT</canonical>
            <polymorphic>TTCTCAGTAATTTCACTGTTAACCCCAACACCTGAATTCTGGAATTCTAATTATTCCCTATTCCCCCTGTCTTGTACTATCACTGGTTTTAGTGCCACCAACCCTCCCATCCAAATTGTTTCAATTTTTAACCGCACTAGCATATATTTTACGGTCGTTAAGTGTTATCTTACTCCTTTTTCCCTCTGTCATTTCGTTTTAGCCAGCCGTTTGACGCCACTGATAACTAGCAAAAAAAAATTACTCACCATTTTGAAATTTTTGTTAAACTTTCTGCTTTGTGTTGAGTGACCTTAAAACGTTCCGAAGACAAATCATATTTTTTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATWTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTTTTGCTAAACTTTTGATTCTCTCACCGATCACTCTGTTTCCCCGGATCTTACAAAAAACACTGTTTTTAGATGTTCCGTCCGACGTTTGACACTTTTCGACCGCCGAACAGTGACAGCTCGACTTTCCGTGCCAGCCAAAGCAGGTATGTTTGTTTTTCGGAAGAAAATTTTTCGTTTGGAGGAGTGTGGTGTTCGGTTTTGAAAAGTATGGATCAGAAATTTCCTTGGATTTTGGGGCATAAGTTCTTTGAAAAAATGCGATTCAAATTTTCAAAGACACATGAAAGACAAAGCGAACAGAATTAATTCGAGTTCAGTTCACAGCTAATCGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>240 214 194 119 70 52 48 34 21 8</canonical_bands>
                <polymorphic_bands>359 214 194 70 52 48 34 21 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>194 193 119 116 65 52 48 35 31 26 22 21 18 17 9 8 8 8 6 4</canonical_bands>
                <polymorphic_bands>194 193 127 116 65 52 48 35 31 26 22 21 18 17 9 8 8 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGACAGTGGTTGATGTAAGTT</pcr_primer_p1>
		<pcr_primer_p2>AAAGTGATTCATCGAAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTT</canonical_amplicon>
		<polymorphic_amplicon>CGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATWTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9055</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>178241</contig_pos>
        <strand>+</strand>
        <context>TGCTAAATWM[C/T]GWGCTYGYAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTT</left_flank>
        <right_flank>GTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAGTAATTTCACTGTTAACCCCAACACCTGAATTCTGGAATTCTAATTATTCCCTATTCCCCCTGTCTTGTACTATCACTGGTTTTAGTGCCACCAACCCTCCCATCCAAATTGTTTCAATTTTTAACCGCACTAGCATATATTTTACGGTCGTTAAGTGTTATCTTACTCCTTTTTCCCTCTGTCATTTCGTTTTAGCCAGCCGTTTGACGCCACTGATAACTAGCAAAAAAAAATTACTCACCATTTTGAAATTTTTGTTAAACTTTCTGCTTTGTGTTGAGTGACCTTAAAACGTTCCGAAGACAAATCATATTTTTTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTTTTGCTAAACTTTTGATTCTCTCACCGATCACTCTGTTTCCCCGGATCTTACAAAAAACACTGTTTTTAGATGTTCCGTCCGACGTTTGACACTTTTCGACCGCCGAACAGTGACAGCTCGACTTTCCGTGCCAGCCAAAGCAGGTATGTTTGTTTTTCGGAAGAAAATTTTTCGTTTGGAGGAGTGTGGTGTTCGGTTTTGAAAAGTATGGATCAGAAATTTCCTTGGATTTTGGGGCATAAGTTCTTTGAAAAAATGCGATTCAAATTTTCAAAGACACATGAAAGACAAAGCGAACAGAATTAATTCGAGTTCAGTTCACAGCTAATCGTTTTGC</canonical>
            <polymorphic>CTCAGTAATTTCACTGTTAACCCCAACACCTGAATTCTGGAATTCTAATTATTCCCTATTCCCCCTGTCTTGTACTATCACTGGTTTTAGTGCCACCAACCCTCCCATCCAAATTGTTTCAATTTTTAACCGCACTAGCATATATTTTACGGTCGTTAAGTGTTATCTTACTCCTTTTTCCCTCTGTCATTTCGTTTTAGCCAGCCGTTTGACGCCACTGATAACTAGCAAAAAAAAATTACTCACCATTTTGAAATTTTTGTTAAACTTTCTGCTTTGTGTTGAGTGACCTTAAAACGTTCCGAAGACAAATCATATTTTTTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTYGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTTTTGCTAAACTTTTGATTCTCTCACCGATCACTCTGTTTCCCCGGATCTTACAAAAAACACTGTTTTTAGATGTTCCGTCCGACGTTTGACACTTTTCGACCGCCGAACAGTGACAGCTCGACTTTCCGTGCCAGCCAAAGCAGGTATGTTTGTTTTTCGGAAGAAAATTTTTCGTTTGGAGGAGTGTGGTGTTCGGTTTTGAAAAGTATGGATCAGAAATTTCCTTGGATTTTGGGGCATAAGTTCTTTGAAAAAATGCGATTCAAATTTTCAAAGACACATGAAAGACAAAGCGAACAGAATTAATTCGAGTTCAGTTCACAGCTAATCGTTTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGACAGTGGTTGATGTAAGTT</pcr_primer_p1>
		<pcr_primer_p2>AAAGTGATTCATCGAAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTT</canonical_amplicon>
		<polymorphic_amplicon>CGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTYGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9056</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>178243</contig_pos>
        <strand>+</strand>
        <context>CTAAATWMYG[A/T]GCTYGYAAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCG</left_flank>
        <right_flank>GCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTAATTTCACTGTTAACCCCAACACCTGAATTCTGGAATTCTAATTATTCCCTATTCCCCCTGTCTTGTACTATCACTGGTTTTAGTGCCACCAACCCTCCCATCCAAATTGTTTCAATTTTTAACCGCACTAGCATATATTTTACGGTCGTTAAGTGTTATCTTACTCCTTTTTCCCTCTGTCATTTCGTTTTAGCCAGCCGTTTGACGCCACTGATAACTAGCAAAAAAAAATTACTCACCATTTTGAAATTTTTGTTAAACTTTCTGCTTTGTGTTGAGTGACCTTAAAACGTTCCGAAGACAAATCATATTTTTTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTTTTGCTAAACTTTTGATTCTCTCACCGATCACTCTGTTTCCCCGGATCTTACAAAAAACACTGTTTTTAGATGTTCCGTCCGACGTTTGACACTTTTCGACCGCCGAACAGTGACAGCTCGACTTTCCGTGCCAGCCAAAGCAGGTATGTTTGTTTTTCGGAAGAAAATTTTTCGTTTGGAGGAGTGTGGTGTTCGGTTTTGAAAAGTATGGATCAGAAATTTCCTTGGATTTTGGGGCATAAGTTCTTTGAAAAAATGCGATTCAAATTTTCAAAGACACATGAAAGACAAAGCGAACAGAATTAATTCGAGTTCAGTTCACAGCTAATCGTTTTGCAT</canonical>
            <polymorphic>CAGTAATTTCACTGTTAACCCCAACACCTGAATTCTGGAATTCTAATTATTCCCTATTCCCCCTGTCTTGTACTATCACTGGTTTTAGTGCCACCAACCCTCCCATCCAAATTGTTTCAATTTTTAACCGCACTAGCATATATTTTACGGTCGTTAAGTGTTATCTTACTCCTTTTTCCCTCTGTCATTTCGTTTTAGCCAGCCGTTTGACGCCACTGATAACTAGCAAAAAAAAATTACTCACCATTTTGAAATTTTTGTTAAACTTTCTGCTTTGTGTTGAGTGACCTTAAAACGTTCCGAAGACAAATCATATTTTTTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGWGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTTTTGCTAAACTTTTGATTCTCTCACCGATCACTCTGTTTCCCCGGATCTTACAAAAAACACTGTTTTTAGATGTTCCGTCCGACGTTTGACACTTTTCGACCGCCGAACAGTGACAGCTCGACTTTCCGTGCCAGCCAAAGCAGGTATGTTTGTTTTTCGGAAGAAAATTTTTCGTTTGGAGGAGTGTGGTGTTCGGTTTTGAAAAGTATGGATCAGAAATTTCCTTGGATTTTGGGGCATAAGTTCTTTGAAAAAATGCGATTCAAATTTTCAAAGACACATGAAAGACAAAGCGAACAGAATTAATTCGAGTTCAGTTCACAGCTAATCGTTTTGCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>88 81 69 65 56 56 55 52 43 42 39 36 32 30 29 28 28 27 27 21 18 18 15 12 11 7 7 3 3 2</canonical_bands>
                <polymorphic_bands>108 88 69 65 56 56 55 52 43 42 39 36 32 30 29 28 28 27 21 18 18 15 12 11 7 7 3 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGACAGTGGTTGATGTAAGTT</pcr_primer_p1>
		<pcr_primer_p2>AAAGTGATTCATCGAAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTT</canonical_amplicon>
		<polymorphic_amplicon>CGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGWGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9057</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>178247</contig_pos>
        <strand>+</strand>
        <context>ATWMYGWGCT[C/T]GYAAGTTAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCT</left_flank>
        <right_flank>GTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTCACTGTTAACCCCAACACCTGAATTCTGGAATTCTAATTATTCCCTATTCCCCCTGTCTTGTACTATCACTGGTTTTAGTGCCACCAACCCTCCCATCCAAATTGTTTCAATTTTTAACCGCACTAGCATATATTTTACGGTCGTTAAGTGTTATCTTACTCCTTTTTCCCTCTGTCATTTCGTTTTAGCCAGCCGTTTGACGCCACTGATAACTAGCAAAAAAAAATTACTCACCATTTTGAAATTTTTGTTAAACTTTCTGCTTTGTGTTGAGTGACCTTAAAACGTTCCGAAGACAAATCATATTTTTTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTTTTGCTAAACTTTTGATTCTCTCACCGATCACTCTGTTTCCCCGGATCTTACAAAAAACACTGTTTTTAGATGTTCCGTCCGACGTTTGACACTTTTCGACCGCCGAACAGTGACAGCTCGACTTTCCGTGCCAGCCAAAGCAGGTATGTTTGTTTTTCGGAAGAAAATTTTTCGTTTGGAGGAGTGTGGTGTTCGGTTTTGAAAAGTATGGATCAGAAATTTCCTTGGATTTTGGGGCATAAGTTCTTTGAAAAAATGCGATTCAAATTTTCAAAGACACATGAAAGACAAAGCGAACAGAATTAATTCGAGTTCAGTTCACAGCTAATCGTTTTGCATTTGA</canonical>
            <polymorphic>AATTTCACTGTTAACCCCAACACCTGAATTCTGGAATTCTAATTATTCCCTATTCCCCCTGTCTTGTACTATCACTGGTTTTAGTGCCACCAACCCTCCCATCCAAATTGTTTCAATTTTTAACCGCACTAGCATATATTTTACGGTCGTTAAGTGTTATCTTACTCCTTTTTCCCTCTGTCATTTCGTTTTAGCCAGCCGTTTGACGCCACTGATAACTAGCAAAAAAAAATTACTCACCATTTTGAAATTTTTGTTAAACTTTCTGCTTTGTGTTGAGTGACCTTAAAACGTTCCGAAGACAAATCATATTTTTTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTYGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTTTTGCTAAACTTTTGATTCTCTCACCGATCACTCTGTTTCCCCGGATCTTACAAAAAACACTGTTTTTAGATGTTCCGTCCGACGTTTGACACTTTTCGACCGCCGAACAGTGACAGCTCGACTTTCCGTGCCAGCCAAAGCAGGTATGTTTGTTTTTCGGAAGAAAATTTTTCGTTTGGAGGAGTGTGGTGTTCGGTTTTGAAAAGTATGGATCAGAAATTTCCTTGGATTTTGGGGCATAAGTTCTTTGAAAAAATGCGATTCAAATTTTCAAAGACACATGAAAGACAAAGCGAACAGAATTAATTCGAGTTCAGTTCACAGCTAATCGTTTTGCATTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGACAGTGGTTGATGTAAGTT</pcr_primer_p1>
		<pcr_primer_p2>AAAGTGATTCATCGAAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTT</canonical_amplicon>
		<polymorphic_amplicon>CGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTYGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9058</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>178249</contig_pos>
        <strand>+</strand>
        <context>WMYGWGCTYG[C/T]AAGTTAAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTG</left_flank>
        <right_flank>AAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCACTGTTAACCCCAACACCTGAATTCTGGAATTCTAATTATTCCCTATTCCCCCTGTCTTGTACTATCACTGGTTTTAGTGCCACCAACCCTCCCATCCAAATTGTTTCAATTTTTAACCGCACTAGCATATATTTTACGGTCGTTAAGTGTTATCTTACTCCTTTTTCCCTCTGTCATTTCGTTTTAGCCAGCCGTTTGACGCCACTGATAACTAGCAAAAAAAAATTACTCACCATTTTGAAATTTTTGTTAAACTTTCTGCTTTGTGTTGAGTGACCTTAAAACGTTCCGAAGACAAATCATATTTTTTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTTTTGCTAAACTTTTGATTCTCTCACCGATCACTCTGTTTCCCCGGATCTTACAAAAAACACTGTTTTTAGATGTTCCGTCCGACGTTTGACACTTTTCGACCGCCGAACAGTGACAGCTCGACTTTCCGTGCCAGCCAAAGCAGGTATGTTTGTTTTTCGGAAGAAAATTTTTCGTTTGGAGGAGTGTGGTGTTCGGTTTTGAAAAGTATGGATCAGAAATTTCCTTGGATTTTGGGGCATAAGTTCTTTGAAAAAATGCGATTCAAATTTTCAAAGACACATGAAAGACAAAGCGAACAGAATTAATTCGAGTTCAGTTCACAGCTAATCGTTTTGCATTTGACT</canonical>
            <polymorphic>TTTCACTGTTAACCCCAACACCTGAATTCTGGAATTCTAATTATTCCCTATTCCCCCTGTCTTGTACTATCACTGGTTTTAGTGCCACCAACCCTCCCATCCAAATTGTTTCAATTTTTAACCGCACTAGCATATATTTTACGGTCGTTAAGTGTTATCTTACTCCTTTTTCCCTCTGTCATTTCGTTTTAGCCAGCCGTTTGACGCCACTGATAACTAGCAAAAAAAAATTACTCACCATTTTGAAATTTTTGTTAAACTTTCTGCTTTGTGTTGAGTGACCTTAAAACGTTCCGAAGACAAATCATATTTTTTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGYAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTTTTGCTAAACTTTTGATTCTCTCACCGATCACTCTGTTTCCCCGGATCTTACAAAAAACACTGTTTTTAGATGTTCCGTCCGACGTTTGACACTTTTCGACCGCCGAACAGTGACAGCTCGACTTTCCGTGCCAGCCAAAGCAGGTATGTTTGTTTTTCGGAAGAAAATTTTTCGTTTGGAGGAGTGTGGTGTTCGGTTTTGAAAAGTATGGATCAGAAATTTCCTTGGATTTTGGGGCATAAGTTCTTTGAAAAAATGCGATTCAAATTTTCAAAGACACATGAAAGACAAAGCGAACAGAATTAATTCGAGTTCAGTTCACAGCTAATCGTTTTGCATTTGACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGACAGTGGTTGATGTAAGTT</pcr_primer_p1>
		<pcr_primer_p2>AAAGTGATTCATCGAAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTT</canonical_amplicon>
		<polymorphic_amplicon>CGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGYAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9059</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>178292</contig_pos>
        <strand>+</strand>
        <context>CCGGGCCGGG[A/T]CTGTYCGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGG</left_flank>
        <right_flank>CTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCCTATTCCCCCTGTCTTGTACTATCACTGGTTTTAGTGCCACCAACCCTCCCATCCAAATTGTTTCAATTTTTAACCGCACTAGCATATATTTTACGGTCGTTAAGTGTTATCTTACTCCTTTTTCCCTCTGTCATTTCGTTTTAGCCAGCCGTTTGACGCCACTGATAACTAGCAAAAAAAAATTACTCACCATTTTGAAATTTTTGTTAAACTTTCTGCTTTGTGTTGAGTGACCTTAAAACGTTCCGAAGACAAATCATATTTTTTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTTTTGCTAAACTTTTGATTCTCTCACCGATCACTCTGTTTCCCCGGATCTTACAAAAAACACTGTTTTTAGATGTTCCGTCCGACGTTTGACACTTTTCGACCGCCGAACAGTGACAGCTCGACTTTCCGTGCCAGCCAAAGCAGGTATGTTTGTTTTTCGGAAGAAAATTTTTCGTTTGGAGGAGTGTGGTGTTCGGTTTTGAAAAGTATGGATCAGAAATTTCCTTGGATTTTGGGGCATAAGTTCTTTGAAAAAATGCGATTCAAATTTTCAAAGACACATGAAAGACAAAGCGAACAGAATTAATTCGAGTTCAGTTCACAGCTAATCGTTTTGCATTTGACTCTTACTGCTCTCAATGCTCTTTCCCCAATGAGAAGGACCCCCT</canonical>
            <polymorphic>TTCCCTATTCCCCCTGTCTTGTACTATCACTGGTTTTAGTGCCACCAACCCTCCCATCCAAATTGTTTCAATTTTTAACCGCACTAGCATATATTTTACGGTCGTTAAGTGTTATCTTACTCCTTTTTCCCTCTGTCATTTCGTTTTAGCCAGCCGTTTGACGCCACTGATAACTAGCAAAAAAAAATTACTCACCATTTTGAAATTTTTGTTAAACTTTCTGCTTTGTGTTGAGTGACCTTAAAACGTTCCGAAGACAAATCATATTTTTTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGWCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTTTTGCTAAACTTTTGATTCTCTCACCGATCACTCTGTTTCCCCGGATCTTACAAAAAACACTGTTTTTAGATGTTCCGTCCGACGTTTGACACTTTTCGACCGCCGAACAGTGACAGCTCGACTTTCCGTGCCAGCCAAAGCAGGTATGTTTGTTTTTCGGAAGAAAATTTTTCGTTTGGAGGAGTGTGGTGTTCGGTTTTGAAAAGTATGGATCAGAAATTTCCTTGGATTTTGGGGCATAAGTTCTTTGAAAAAATGCGATTCAAATTTTCAAAGACACATGAAAGACAAAGCGAACAGAATTAATTCGAGTTCAGTTCACAGCTAATCGTTTTGCATTTGACTCTTACTGCTCTCAATGCTCTTTCCCCAATGAGAAGGACCCCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGACAGTGGTTGATGTAAGTT</pcr_primer_p1>
		<pcr_primer_p2>AAAGTGATTCATCGAAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTT</canonical_amplicon>
		<polymorphic_amplicon>CGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGWCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9060</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>178297</contig_pos>
        <strand>+</strand>
        <context>CCGGGWCTGT[C/T]CGAAAGAACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGT</left_flank>
        <right_flank>CGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTCCCCCTGTCTTGTACTATCACTGGTTTTAGTGCCACCAACCCTCCCATCCAAATTGTTTCAATTTTTAACCGCACTAGCATATATTTTACGGTCGTTAAGTGTTATCTTACTCCTTTTTCCCTCTGTCATTTCGTTTTAGCCAGCCGTTTGACGCCACTGATAACTAGCAAAAAAAAATTACTCACCATTTTGAAATTTTTGTTAAACTTTCTGCTTTGTGTTGAGTGACCTTAAAACGTTCCGAAGACAAATCATATTTTTTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTTTTGCTAAACTTTTGATTCTCTCACCGATCACTCTGTTTCCCCGGATCTTACAAAAAACACTGTTTTTAGATGTTCCGTCCGACGTTTGACACTTTTCGACCGCCGAACAGTGACAGCTCGACTTTCCGTGCCAGCCAAAGCAGGTATGTTTGTTTTTCGGAAGAAAATTTTTCGTTTGGAGGAGTGTGGTGTTCGGTTTTGAAAAGTATGGATCAGAAATTTCCTTGGATTTTGGGGCATAAGTTCTTTGAAAAAATGCGATTCAAATTTTCAAAGACACATGAAAGACAAAGCGAACAGAATTAATTCGAGTTCAGTTCACAGCTAATCGTTTTGCATTTGACTCTTACTGCTCTCAATGCTCTTTCCCCAATGAGAAGGACCCCCTTCTCT</canonical>
            <polymorphic>TATTCCCCCTGTCTTGTACTATCACTGGTTTTAGTGCCACCAACCCTCCCATCCAAATTGTTTCAATTTTTAACCGCACTAGCATATATTTTACGGTCGTTAAGTGTTATCTTACTCCTTTTTCCCTCTGTCATTTCGTTTTAGCCAGCCGTTTGACGCCACTGATAACTAGCAAAAAAAAATTACTCACCATTTTGAAATTTTTGTTAAACTTTCTGCTTTGTGTTGAGTGACCTTAAAACGTTCCGAAGACAAATCATATTTTTTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTYCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTTTTGCTAAACTTTTGATTCTCTCACCGATCACTCTGTTTCCCCGGATCTTACAAAAAACACTGTTTTTAGATGTTCCGTCCGACGTTTGACACTTTTCGACCGCCGAACAGTGACAGCTCGACTTTCCGTGCCAGCCAAAGCAGGTATGTTTGTTTTTCGGAAGAAAATTTTTCGTTTGGAGGAGTGTGGTGTTCGGTTTTGAAAAGTATGGATCAGAAATTTCCTTGGATTTTGGGGCATAAGTTCTTTGAAAAAATGCGATTCAAATTTTCAAAGACACATGAAAGACAAAGCGAACAGAATTAATTCGAGTTCAGTTCACAGCTAATCGTTTTGCATTTGACTCTTACTGCTCTCAATGCTCTTTCCCCAATGAGAAGGACCCCCTTCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>500 438 62</canonical_bands>
                <polymorphic_bands>562 438</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>320 190 159 110 84 62 31 22 22</canonical_bands>
                <polymorphic_bands>320 221 190 110 84 31 22 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGACAGTGGTTGATGTAAGTT</pcr_primer_p1>
		<pcr_primer_p2>AAAGTGATTCATCGAAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTT</canonical_amplicon>
		<polymorphic_amplicon>CGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTYCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9061</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>179879</contig_pos>
        <strand>+</strand>
        <context>CCAAARAGCM[C/T]TGAAGTGTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCA</left_flank>
        <right_flank>TGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCAGTGATTTTAACGATTTTTTCATACAAAAACGTTGACTTTCTTCCAACTTCAATCTATTAAAACTACCGTGAACGCTGTAGTAGAAGCTCAGCGTATACATAAACTTTGAGCTCAATTATCTCGGTTCTTATAAAATATCATAAATTTGTCAAGTAACAAAATGTTTGTGATAATGTGATAAATAATTTATCAGTTGACCAATTTTCGGTATCTTTCATGAGAACCGAGATTATTGTGCTCAAATTTGACAGCTTGGGTGGGTTTACCATATTTTATTTTTAAATGATTTTCAGTAATTTTTTTCTTCTAAATAGCTTGTTCTTTGTCTAGCTTAATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTGTCCTGCACCATCAACTGTCTTTCCTTTCATCTCTGACTCTCCCTATTTTGAAATGTATGCAAATTCAGTTCAGCGCTATTCATGTAAATTTGCTTCCCCTGACGTTTACGCACTTTACACTACGACATCATCATTCTTATTAACTTTTAGTAATATATTTCACTCCGTTTTTACAACGATCTATACTCAATTTTACTGCTTTTGGTAGAAGGTTTATAGTCCTCTTGCCATTTTTTTGTTGTAAACATAATTGTCAAAAAAAACTTGGGTATACTCAACCCTCTTGATATTTTATGTTTCCTTCTTGTGCGGCAATTATTGGCGGATTTTGTGAACGGCAAGTGGTTGAGGACACTTTCGGAAATCTGAGGGGGCGATAATTGAAATGACCTTGCTAAGTGAACCTCGGAATGATGAGGACAACGTTTTGTGAGAGGGAGAAA</canonical>
            <polymorphic>TTTCAGTGATTTTAACGATTTTTTCATACAAAAACGTTGACTTTCTTCCAACTTCAATCTATTAAAACTACCGTGAACGCTGTAGTAGAAGCTCAGCGTATACATAAACTTTGAGCTCAATTATCTCGGTTCTTATAAAATATCATAAATTTGTCAAGTAACAAAATGTTTGTGATAATGTGATAAATAATTTATCAGTTGACCAATTTTCGGTATCTTTCATGAGAACCGAGATTATTGTGCTCAAATTTGACAGCTTGGGTGGGTTTACCATATTTTATTTTTAAATGATTTTCAGTAATTTTTTTCTTCTAAATAGCTTGTTCTTTGTCTAGCTTAATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCAYTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTGTCCTGCACCATCAACTGTCTTTCCTTTCATCTCTGACTCTCCCTATTTTGAAATGTATGCAAATTCAGTTCAGCGCTATTCATGTAAATTTGCTTCCCCTGACGTTTACGCACTTTACACTACGACATCATCATTCTTATTAACTTTTAGTAATATATTTCACTCCGTTTTTACAACGATCTATACTCAATTTTACTGCTTTTGGTAGAAGGTTTATAGTCCTCTTGCCATTTTTTTGTTGTAAACATAATTGTCAAAAAAAACTTGGGTATACTCAACCCTCTTGATATTTTATGTTTCCTTCTTGTGCGGCAATTATTGGCGGATTTTGTGAACGGCAAGTGGTTGAGGACACTTTCGGAAATCTGAGGGGGCGATAATTGAAATGACCTTGCTAAGTGAACCTCGGAATGATGAGGACAACGTTTTGTGAGAGGGAGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGACTTTTCCCAAGTTTAT</pcr_primer_p1>
		<pcr_primer_p2>AGATGAAAGGAAAGACAGTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTGTCCTGCACCATCAACTGTCTTTCCTTTCATCT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCAYTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTGTCCTGCACCATCAACTGTCTTTCCTTTCATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9062</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>179878</contig_pos>
        <strand>+</strand>
        <context>TCCAAARAGC[A/C]YTGAAGTGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGC</left_flank>
        <right_flank>TTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCAT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCAGTGATTTTAACGATTTTTTCATACAAAAACGTTGACTTTCTTCCAACTTCAATCTATTAAAACTACCGTGAACGCTGTAGTAGAAGCTCAGCGTATACATAAACTTTGAGCTCAATTATCTCGGTTCTTATAAAATATCATAAATTTGTCAAGTAACAAAATGTTTGTGATAATGTGATAAATAATTTATCAGTTGACCAATTTTCGGTATCTTTCATGAGAACCGAGATTATTGTGCTCAAATTTGACAGCTTGGGTGGGTTTACCATATTTTATTTTTAAATGATTTTCAGTAATTTTTTTCTTCTAAATAGCTTGTTCTTTGTCTAGCTTAATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTGTCCTGCACCATCAACTGTCTTTCCTTTCATCTCTGACTCTCCCTATTTTGAAATGTATGCAAATTCAGTTCAGCGCTATTCATGTAAATTTGCTTCCCCTGACGTTTACGCACTTTACACTACGACATCATCATTCTTATTAACTTTTAGTAATATATTTCACTCCGTTTTTACAACGATCTATACTCAATTTTACTGCTTTTGGTAGAAGGTTTATAGTCCTCTTGCCATTTTTTTGTTGTAAACATAATTGTCAAAAAAAACTTGGGTATACTCAACCCTCTTGATATTTTATGTTTCCTTCTTGTGCGGCAATTATTGGCGGATTTTGTGAACGGCAAGTGGTTGAGGACACTTTCGGAAATCTGAGGGGGCGATAATTGAAATGACCTTGCTAAGTGAACCTCGGAATGATGAGGACAACGTTTTGTGAGAGGGAGAA</canonical>
            <polymorphic>TTTTCAGTGATTTTAACGATTTTTTCATACAAAAACGTTGACTTTCTTCCAACTTCAATCTATTAAAACTACCGTGAACGCTGTAGTAGAAGCTCAGCGTATACATAAACTTTGAGCTCAATTATCTCGGTTCTTATAAAATATCATAAATTTGTCAAGTAACAAAATGTTTGTGATAATGTGATAAATAATTTATCAGTTGACCAATTTTCGGTATCTTTCATGAGAACCGAGATTATTGTGCTCAAATTTGACAGCTTGGGTGGGTTTACCATATTTTATTTTTAAATGATTTTCAGTAATTTTTTTCTTCTAAATAGCTTGTTCTTTGTCTAGCTTAATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCMTTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTGTCCTGCACCATCAACTGTCTTTCCTTTCATCTCTGACTCTCCCTATTTTGAAATGTATGCAAATTCAGTTCAGCGCTATTCATGTAAATTTGCTTCCCCTGACGTTTACGCACTTTACACTACGACATCATCATTCTTATTAACTTTTAGTAATATATTTCACTCCGTTTTTACAACGATCTATACTCAATTTTACTGCTTTTGGTAGAAGGTTTATAGTCCTCTTGCCATTTTTTTGTTGTAAACATAATTGTCAAAAAAAACTTGGGTATACTCAACCCTCTTGATATTTTATGTTTCCTTCTTGTGCGGCAATTATTGGCGGATTTTGTGAACGGCAAGTGGTTGAGGACACTTTCGGAAATCTGAGGGGGCGATAATTGAAATGACCTTGCTAAGTGAACCTCGGAATGATGAGGACAACGTTTTGTGAGAGGGAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGACTTTTCCCAAGTTTAT</pcr_primer_p1>
		<pcr_primer_p2>AGATGAAAGGAAAGACAGTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTGTCCTGCACCATCAACTGTCTTTCCTTTCATCT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCMTTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTGTCCTGCACCATCAACTGTCTTTCCTTTCATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9063</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>179874</contig_pos>
        <strand>+</strand>
        <context>AACTTCCAAA[A/G]AGCMYTGAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAA</left_flank>
        <right_flank>AGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGTTTTCAGTGATTTTAACGATTTTTTCATACAAAAACGTTGACTTTCTTCCAACTTCAATCTATTAAAACTACCGTGAACGCTGTAGTAGAAGCTCAGCGTATACATAAACTTTGAGCTCAATTATCTCGGTTCTTATAAAATATCATAAATTTGTCAAGTAACAAAATGTTTGTGATAATGTGATAAATAATTTATCAGTTGACCAATTTTCGGTATCTTTCATGAGAACCGAGATTATTGTGCTCAAATTTGACAGCTTGGGTGGGTTTACCATATTTTATTTTTAAATGATTTTCAGTAATTTTTTTCTTCTAAATAGCTTGTTCTTTGTCTAGCTTAATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTGTCCTGCACCATCAACTGTCTTTCCTTTCATCTCTGACTCTCCCTATTTTGAAATGTATGCAAATTCAGTTCAGCGCTATTCATGTAAATTTGCTTCCCCTGACGTTTACGCACTTTACACTACGACATCATCATTCTTATTAACTTTTAGTAATATATTTCACTCCGTTTTTACAACGATCTATACTCAATTTTACTGCTTTTGGTAGAAGGTTTATAGTCCTCTTGCCATTTTTTTGTTGTAAACATAATTGTCAAAAAAAACTTGGGTATACTCAACCCTCTTGATATTTTATGTTTCCTTCTTGTGCGGCAATTATTGGCGGATTTTGTGAACGGCAAGTGGTTGAGGACACTTTCGGAAATCTGAGGGGGCGATAATTGAAATGACCTTGCTAAGTGAACCTCGGAATGATGAGGACAACGTTTTGTGAGAGGG</canonical>
            <polymorphic>ATAGTTTTCAGTGATTTTAACGATTTTTTCATACAAAAACGTTGACTTTCTTCCAACTTCAATCTATTAAAACTACCGTGAACGCTGTAGTAGAAGCTCAGCGTATACATAAACTTTGAGCTCAATTATCTCGGTTCTTATAAAATATCATAAATTTGTCAAGTAACAAAATGTTTGTGATAATGTGATAAATAATTTATCAGTTGACCAATTTTCGGTATCTTTCATGAGAACCGAGATTATTGTGCTCAAATTTGACAGCTTGGGTGGGTTTACCATATTTTATTTTTAAATGATTTTCAGTAATTTTTTTCTTCTAAATAGCTTGTTCTTTGTCTAGCTTAATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAARAGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTGTCCTGCACCATCAACTGTCTTTCCTTTCATCTCTGACTCTCCCTATTTTGAAATGTATGCAAATTCAGTTCAGCGCTATTCATGTAAATTTGCTTCCCCTGACGTTTACGCACTTTACACTACGACATCATCATTCTTATTAACTTTTAGTAATATATTTCACTCCGTTTTTACAACGATCTATACTCAATTTTACTGCTTTTGGTAGAAGGTTTATAGTCCTCTTGCCATTTTTTTGTTGTAAACATAATTGTCAAAAAAAACTTGGGTATACTCAACCCTCTTGATATTTTATGTTTCCTTCTTGTGCGGCAATTATTGGCGGATTTTGTGAACGGCAAGTGGTTGAGGACACTTTCGGAAATCTGAGGGGGCGATAATTGAAATGACCTTGCTAAGTGAACCTCGGAATGATGAGGACAACGTTTTGTGAGAGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGACTTTTCCCAAGTTTAT</pcr_primer_p1>
		<pcr_primer_p2>AGATGAAAGGAAAGACAGTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTGTCCTGCACCATCAACTGTCTTTCCTTTCATCT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAARAGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTGTCCTGCACCATCAACTGTCTTTCCTTTCATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9064</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>179781</contig_pos>
        <strand>+</strand>
        <context>GAGAATTTTT[C/T]GTACCTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTT</left_flank>
        <right_flank>GTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGAGATTCCATGTTTTCACATCGAGTTTGATAGTTTGTGGTTCTGTCTACATTTTTCATAATTTTGACTAAAATGCTATACTATGTTTGAAATAGTTTTCAGTGATTTTAACGATTTTTTCATACAAAAACGTTGACTTTCTTCCAACTTCAATCTATTAAAACTACCGTGAACGCTGTAGTAGAAGCTCAGCGTATACATAAACTTTGAGCTCAATTATCTCGGTTCTTATAAAATATCATAAATTTGTCAAGTAACAAAATGTTTGTGATAATGTGATAAATAATTTATCAGTTGACCAATTTTCGGTATCTTTCATGAGAACCGAGATTATTGTGCTCAAATTTGACAGCTTGGGTGGGTTTACCATATTTTATTTTTAAATGATTTTCAGTAATTTTTTTCTTCTAAATAGCTTGTTCTTTGTCTAGCTTAATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTGTCCTGCACCATCAACTGTCTTTCCTTTCATCTCTGACTCTCCCTATTTTGAAATGTATGCAAATTCAGTTCAGCGCTATTCATGTAAATTTGCTTCCCCTGACGTTTACGCACTTTACACTACGACATCATCATTCTTATTAACTTTTAGTAATATATTTCACTCCGTTTTTACAACGATCTATACTCAATTTTACTGCTTTTGGTAGAAGGTTTATAGTCCTCTTGCCATTTTTTTGTTGTAAACATAATTGTCAAAAAAAACTTGGGTATACTCAACCCTCTTGATATTTTATGTTTCCTTCTTGTGCGGCAATTATTGGCGGATTTTGTGAACGGCAAGTGG</canonical>
            <polymorphic>ATCGAGATTCCATGTTTTCACATCGAGTTTGATAGTTTGTGGTTCTGTCTACATTTTTCATAATTTTGACTAAAATGCTATACTATGTTTGAAATAGTTTTCAGTGATTTTAACGATTTTTTCATACAAAAACGTTGACTTTCTTCCAACTTCAATCTATTAAAACTACCGTGAACGCTGTAGTAGAAGCTCAGCGTATACATAAACTTTGAGCTCAATTATCTCGGTTCTTATAAAATATCATAAATTTGTCAAGTAACAAAATGTTTGTGATAATGTGATAAATAATTTATCAGTTGACCAATTTTCGGTATCTTTCATGAGAACCGAGATTATTGTGCTCAAATTTGACAGCTTGGGTGGGTTTACCATATTTTATTTTTAAATGATTTTCAGTAATTTTTTTCTTCTAAATAGCTTGTTCTTTGTCTAGCTTAATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTTYGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTGTCCTGCACCATCAACTGTCTTTCCTTTCATCTCTGACTCTCCCTATTTTGAAATGTATGCAAATTCAGTTCAGCGCTATTCATGTAAATTTGCTTCCCCTGACGTTTACGCACTTTACACTACGACATCATCATTCTTATTAACTTTTAGTAATATATTTCACTCCGTTTTTACAACGATCTATACTCAATTTTACTGCTTTTGGTAGAAGGTTTATAGTCCTCTTGCCATTTTTTTGTTGTAAACATAATTGTCAAAAAAAACTTGGGTATACTCAACCCTCTTGATATTTTATGTTTCCTTCTTGTGCGGCAATTATTGGCGGATTTTGTGAACGGCAAGTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGACTTTTCCCAAGTTTAT</pcr_primer_p1>
		<pcr_primer_p2>AGATGAAAGGAAAGACAGTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTGTCCTGCACCATCAACTGTCTTTCCTTTCATCT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTTYGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTGTCCTGCACCATCAACTGTCTTTCCTTTCATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9065</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>179762</contig_pos>
        <strand>+</strand>
        <context>CTSAATCTTT[A/C]TGAATCTCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAGCTTAATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTT</left_flank>
        <right_flank>TGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTGAAAAAAAACGGAAAAATCGAGATTCCATGTTTTCACATCGAGTTTGATAGTTTGTGGTTCTGTCTACATTTTTCATAATTTTGACTAAAATGCTATACTATGTTTGAAATAGTTTTCAGTGATTTTAACGATTTTTTCATACAAAAACGTTGACTTTCTTCCAACTTCAATCTATTAAAACTACCGTGAACGCTGTAGTAGAAGCTCAGCGTATACATAAACTTTGAGCTCAATTATCTCGGTTCTTATAAAATATCATAAATTTGTCAAGTAACAAAATGTTTGTGATAATGTGATAAATAATTTATCAGTTGACCAATTTTCGGTATCTTTCATGAGAACCGAGATTATTGTGCTCAAATTTGACAGCTTGGGTGGGTTTACCATATTTTATTTTTAAATGATTTTCAGTAATTTTTTTCTTCTAAATAGCTTGTTCTTTGTCTAGCTTAATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTGTCCTGCACCATCAACTGTCTTTCCTTTCATCTCTGACTCTCCCTATTTTGAAATGTATGCAAATTCAGTTCAGCGCTATTCATGTAAATTTGCTTCCCCTGACGTTTACGCACTTTACACTACGACATCATCATTCTTATTAACTTTTAGTAATATATTTCACTCCGTTTTTACAACGATCTATACTCAATTTTACTGCTTTTGGTAGAAGGTTTATAGTCCTCTTGCCATTTTTTTGTTGTAAACATAATTGTCAAAAAAAACTTGGGTATACTCAACCCTCTTGATATTTTATGTTTCCTTCTTGTGCGGCAATTATTGGCGGA</canonical>
            <polymorphic>CGTGAAAAAAAACGGAAAAATCGAGATTCCATGTTTTCACATCGAGTTTGATAGTTTGTGGTTCTGTCTACATTTTTCATAATTTTGACTAAAATGCTATACTATGTTTGAAATAGTTTTCAGTGATTTTAACGATTTTTTCATACAAAAACGTTGACTTTCTTCCAACTTCAATCTATTAAAACTACCGTGAACGCTGTAGTAGAAGCTCAGCGTATACATAAACTTTGAGCTCAATTATCTCGGTTCTTATAAAATATCATAAATTTGTCAAGTAACAAAATGTTTGTGATAATGTGATAAATAATTTATCAGTTGACCAATTTTCGGTATCTTTCATGAGAACCGAGATTATTGTGCTCAAATTTGACAGCTTGGGTGGGTTTACCATATTTTATTTTTAAATGATTTTCAGTAATTTTTTTCTTCTAAATAGCTTGTTCTTTGTCTAGCTTAATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTMTGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTGTCCTGCACCATCAACTGTCTTTCCTTTCATCTCTGACTCTCCCTATTTTGAAATGTATGCAAATTCAGTTCAGCGCTATTCATGTAAATTTGCTTCCCCTGACGTTTACGCACTTTACACTACGACATCATCATTCTTATTAACTTTTAGTAATATATTTCACTCCGTTTTTACAACGATCTATACTCAATTTTACTGCTTTTGGTAGAAGGTTTATAGTCCTCTTGCCATTTTTTTGTTGTAAACATAATTGTCAAAAAAAACTTGGGTATACTCAACCCTCTTGATATTTTATGTTTCCTTCTTGTGCGGCAATTATTGGCGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTCTAAATAGCTTGTTCTTTGTC</pcr_primer_p1>
		<pcr_primer_p2>CACACGCTATGCATTTGTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTCTAAATAGCTTGTTCTTTGTCTAGCTTAATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTG</canonical_amplicon>
		<polymorphic_amplicon>TCTTCTAAATAGCTTGTTCTTTGTCTAGCTTAATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTMTGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9066</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>179754</contig_pos>
        <strand>+</strand>
        <context>CAAGTAGACT[C/G]AATCTTTMTG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCTTTGTCTAGCTTAATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACT</left_flank>
        <right_flank>AATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTCTCACGTGAAAAAAAACGGAAAAATCGAGATTCCATGTTTTCACATCGAGTTTGATAGTTTGTGGTTCTGTCTACATTTTTCATAATTTTGACTAAAATGCTATACTATGTTTGAAATAGTTTTCAGTGATTTTAACGATTTTTTCATACAAAAACGTTGACTTTCTTCCAACTTCAATCTATTAAAACTACCGTGAACGCTGTAGTAGAAGCTCAGCGTATACATAAACTTTGAGCTCAATTATCTCGGTTCTTATAAAATATCATAAATTTGTCAAGTAACAAAATGTTTGTGATAATGTGATAAATAATTTATCAGTTGACCAATTTTCGGTATCTTTCATGAGAACCGAGATTATTGTGCTCAAATTTGACAGCTTGGGTGGGTTTACCATATTTTATTTTTAAATGATTTTCAGTAATTTTTTTCTTCTAAATAGCTTGTTCTTTGTCTAGCTTAATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTGTCCTGCACCATCAACTGTCTTTCCTTTCATCTCTGACTCTCCCTATTTTGAAATGTATGCAAATTCAGTTCAGCGCTATTCATGTAAATTTGCTTCCCCTGACGTTTACGCACTTTACACTACGACATCATCATTCTTATTAACTTTTAGTAATATATTTCACTCCGTTTTTACAACGATCTATACTCAATTTTACTGCTTTTGGTAGAAGGTTTATAGTCCTCTTGCCATTTTTTTGTTGTAAACATAATTGTCAAAAAAAACTTGGGTATACTCAACCCTCTTGATATTTTATGTTTCCTTCTTGTGCGGCAATTA</canonical>
            <polymorphic>TATTCTCACGTGAAAAAAAACGGAAAAATCGAGATTCCATGTTTTCACATCGAGTTTGATAGTTTGTGGTTCTGTCTACATTTTTCATAATTTTGACTAAAATGCTATACTATGTTTGAAATAGTTTTCAGTGATTTTAACGATTTTTTCATACAAAAACGTTGACTTTCTTCCAACTTCAATCTATTAAAACTACCGTGAACGCTGTAGTAGAAGCTCAGCGTATACATAAACTTTGAGCTCAATTATCTCGGTTCTTATAAAATATCATAAATTTGTCAAGTAACAAAATGTTTGTGATAATGTGATAAATAATTTATCAGTTGACCAATTTTCGGTATCTTTCATGAGAACCGAGATTATTGTGCTCAAATTTGACAGCTTGGGTGGGTTTACCATATTTTATTTTTAAATGATTTTCAGTAATTTTTTTCTTCTAAATAGCTTGTTCTTTGTCTAGCTTAATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTSAATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTGTCCTGCACCATCAACTGTCTTTCCTTTCATCTCTGACTCTCCCTATTTTGAAATGTATGCAAATTCAGTTCAGCGCTATTCATGTAAATTTGCTTCCCCTGACGTTTACGCACTTTACACTACGACATCATCATTCTTATTAACTTTTAGTAATATATTTCACTCCGTTTTTACAACGATCTATACTCAATTTTACTGCTTTTGGTAGAAGGTTTATAGTCCTCTTGCCATTTTTTTGTTGTAAACATAATTGTCAAAAAAAACTTGGGTATACTCAACCCTCTTGATATTTTATGTTTCCTTCTTGTGCGGCAATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>467 283 207 33 10</canonical_bands>
                <polymorphic_bands>477 283 207 33</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>490 467 33 10</canonical_bands>
                <polymorphic_bands>490 477 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTCTAAATAGCTTGTTCTTTGTC</pcr_primer_p1>
		<pcr_primer_p2>CACACGCTATGCATTTGTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTCTAAATAGCTTGTTCTTTGTCTAGCTTAATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTG</canonical_amplicon>
		<polymorphic_amplicon>TCTTCTAAATAGCTTGTTCTTTGTCTAGCTTAATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTSAATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9067</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>179715</contig_pos>
        <strand></strand>
        <context>CTTTGTCTAG[C/A]TTAATTTTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AAATGATTTTCAGTAATTTTTTTCTTCTAAATAGCTTGTTCTTTGTCTAG</left_flank>
        <right_flank>TTAATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAGAATTCTGAAAAATTTATTGAAATTCACTTCATCTATATTCTCACGTGAAAAAAAACGGAAAAATCGAGATTCCATGTTTTCACATCGAGTTTGATAGTTTGTGGTTCTGTCTACATTTTTCATAATTTTGACTAAAATGCTATACTATGTTTGAAATAGTTTTCAGTGATTTTAACGATTTTTTCATACAAAAACGTTGACTTTCTTCCAACTTCAATCTATTAAAACTACCGTGAACGCTGTAGTAGAAGCTCAGCGTATACATAAACTTTGAGCTCAATTATCTCGGTTCTTATAAAATATCATAAATTTGTCAAGTAACAAAATGTTTGTGATAATGTGATAAATAATTTATCAGTTGACCAATTTTCGGTATCTTTCATGAGAACCGAGATTATTGTGCTCAAATTTGACAGCTTGGGTGGGTTTACCATATTTTATTTTTAAATGATTTTCAGTAATTTTTTTCTTCTAAATAGCTTGTTCTTTGTCTAGCTTAATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTGTCCTGCACCATCAACTGTCTTTCCTTTCATCTCTGACTCTCCCTATTTTGAAATGTATGCAAATTCAGTTCAGCGCTATTCATGTAAATTTGCTTCCCCTGACGTTTACGCACTTTACACTACGACATCATCATTCTTATTAACTTTTAGTAATATATTTCACTCCGTTTTTACAACGATCTATACTCAATTTTACTGCTTTTGGTAGAAGGTTTATAGTCCTCTTGCCATTTTTTTGTTGTAAACATAATTGTCAAAAAAAACTTGGGTATACTCAAC</canonical>
            <polymorphic>TTAGAATTCTGAAAAATTTATTGAAATTCACTTCATCTATATTCTCACGTGAAAAAAAACGGAAAAATCGAGATTCCATGTTTTCACATCGAGTTTGATAGTTTGTGGTTCTGTCTACATTTTTCATAATTTTGACTAAAATGCTATACTATGTTTGAAATAGTTTTCAGTGATTTTAACGATTTTTTCATACAAAAACGTTGACTTTCTTCCAACTTCAATCTATTAAAACTACCGTGAACGCTGTAGTAGAAGCTCAGCGTATACATAAACTTTGAGCTCAATTATCTCGGTTCTTATAAAATATCATAAATTTGTCAAGTAACAAAATGTTTGTGATAATGTGATAAATAATTTATCAGTTGACCAATTTTCGGTATCTTTCATGAGAACCGAGATTATTGTGCTCAAATTTGACAGCTTGGGTGGGTTTACCATATTTTATTTTTAAATGATTTTCAGTAATTTTTTTCTTCTAAATAGCTTGTTCTTTGTCTAGMTTAATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTGTCCTGCACCATCAACTGTCTTTCCTTTCATCTCTGACTCTCCCTATTTTGAAATGTATGCAAATTCAGTTCAGCGCTATTCATGTAAATTTGCTTCCCCTGACGTTTACGCACTTTACACTACGACATCATCATTCTTATTAACTTTTAGTAATATATTTCACTCCGTTTTTACAACGATCTATACTCAATTTTACTGCTTTTGGTAGAAGGTTTATAGTCCTCTTGCCATTTTTTTGTTGTAAACATAATTGTCAAAAAAAACTTGGGTATACTCAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>376 255 141 125 63 24 16</canonical_bands>
                <polymorphic_bands>376 255 141 141 63 24</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>300 255 141 125 76 63 24 16</canonical_bands>
                <polymorphic_bands>300 255 141 141 76 63 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTTTCTTCCAACTTCAATCTA</pcr_primer_p1>
		<pcr_primer_p2>ATTGTAATGCATCAGAAAAGGTA</pcr_primer_p2>
		<pcr_amplicon_size>388</pcr_amplicon_size>
		<canonical_amplicon>GACTTTCTTCCAACTTCAATCTATTAAAACTACCGTGAACGCTGTAGTAGAAGCTCAGCGTATACATAAACTTTGAGCTCAATTATCTCGGTTCTTATAAAATATCATAAATTTGTCAAGTAACAAAATGTTTGTGATAATGTGATAAATAATTTATCAGTTGACCAATTTTCGGTATCTTTCATGAGAACCGAGATTATTGTGCTCAAATTTGACAGCTTGGGTGGGTTTACCATATTTTATTTTTAAATGATTTTCAGTAATTTTTTTCTTCTAAATAGCTTGTTCTTTGTCTAGCTTAATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAAT</canonical_amplicon>
		<polymorphic_amplicon>GACTTTCTTCCAACTTCAATCTATTAAAACTACCGTGAACGCTGTAGTAGAAGCTCAGCGTATACATAAACTTTGAGCTCAATTATCTCGGTTCTTATAAAATATCATAAATTTGTCAAGTAACAAAATGTTTGTGATAATGTGATAAATAATTTATCAGTTGACCAATTTTCGGTATCTTTCATGAGAACCGAGATTATTGTGCTCAAATTTGACAGCTTGGGTGGGTTTACCATATTTTATTTTTAAATGATTTTCAGTAATTTTTTTCTTCTAAATAGCTTGTTCTTTGTCTAGMTTAATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9068</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>191300</contig_pos>
        <strand>+</strand>
        <context>AAGGTATTCG[A/G]AGATTTCCGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAAAACTGAGAAGAAAGTGACGATGATGAAGAAATTTGAAGGTATTCG</left_flank>
        <right_flank>AGATTTCCGGAAACTTGGTTTGCGTATATAATTCATGAATCATCATCGTG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGCTCTTTTGTCTAAATATTCCAAGAAACACTACTACAGTAATCCTTCAATTCAACTTAAACAAGTTTTAAGCGTACTTACCGACGACTACGGCAATTAGTAGGAGAAGCATGGAAAACAGCGTTAGCTGGAAGGACATGTCGGTGCAATGAATGAAGCTTCGATGGGCGGAGCCTCGACACGTTGAGCAGAAATCTATGACGGGTAAATTTGAAGACGCGACGGCGAGCGATATTCCACACCCTTACTTAGAATCAAAGTTTTTGTGTGAAAAAACGAAGAGAGTCGTAAGAAAAGACAAAAAAGGGGCGGAGACGGTTCCTTGGCGGAGTTTGAAATGAGATAGGGCGCGGCTTGTATAGTGCTAATGAACGGAAAGTAAGCGAGAAGATGACTTTTGAAGATGAGCTGCTTGCACATGAAAAGTTGGCTTACGTTTTGCGTTATTTTGAAAACTGAGAAGAAAGTGACGATGATGAAGAAATTTGAAGGTATTCGGAGATTTCCGGAAACTTGGTTTGCGTATATAATTCATGAATCATCATCGTGCTTGTGTGTGTTTTGGGGCACCGGAAGAAAGTTGATATGGGGAGGCTAACAACAAGTACAAAGTTTAGAAAGATCCGGAAATCGGGAGAGATATGAGGGGGCGAAGATGAATTTTGTGATTCTGATTTGTGGTGGAGAAGAGATATTTTGAAAATAAAGAAGGGATCGAAAGAATCAGAATATTCAAGGTGATAGAATCTAGACTACTGTGGTCGGAGGTGTTCGGAACAAAACTCGAATTTAAAAATTAACAAAAATTCGAGCGTTTTGGAGAATATTCCCAAAGGTTTTTTTTCAAAACTAAATTCCGAATTTATTTTCTGAGTTAGAGCGTTTTGGATTACGATATGTCAAAGGCGCTAGCTAAAAGTTTCTTTGCGGGTCTCCAGCGGGATTCCTTTGTTGCGTTTTCGAAATTCGATTGTCAATTTTTTGCGCTTTTTTGATGGG</canonical>
            <polymorphic>GGGCTCTTTTGTCTAAATATTCCAAGAAACACTACTACAGTAATCCTTCAATTCAACTTAAACAAGTTTTAAGCGTACTTACCGACGACTACGGCAATTAGTAGGAGAAGCATGGAAAACAGCGTTAGCTGGAAGGACATGTCGGTGCAATGAATGAAGCTTCGATGGGCGGAGCCTCGACACGTTGAGCAGAAATCTATGACGGGTAAATTTGAAGACGCGACGGCGAGCGATATTCCACACCCTTACTTAGAATCAAAGTTTTTGTGTGAAAAAACGAAGAGAGTCGTAAGAAAAGACAAAAAAGGGGCGGAGACGGTTCCTTGGCGGAGTTTGAAATGAGATAGGGCGCGGCTTGTATAGTGCTAATGAACGGAAAGTAAGCGAGAAGATGACTTTTGAAGATGAGCTGCTTGCACATGAAAAGTTGGCTTACGTTTTGCGTTATTTTGAAAACTGAGAAGAAAGTGACGATGATGAAGAAATTTGAAGGTATTCGRAGATTTCCGGAAACTTGGTTTGCGTATATAATTCATGAATCATCATCGTGCTTGTGTGTGTTTTGGGGCACCGGAAGAAAGTTGATATGGGGAGGCTAACAACAAGTACAAAGTTTAGAAAGATCCGGAAATCGGGAGAGATATGAGGGGGCGAAGATGAATTTTGTGATTCTGATTTGTGGTGGAGAAGAGATATTTTGAAAATAAAGAAGGGATCGAAAGAATCAGAATATTCAAGGTGATAGAATCTAGACTACTGTGGTCGGAGGTGTTCGGAACAAAACTCGAATTTAAAAATTAACAAAAATTCGAGCGTTTTGGAGAATATTCCCAAAGGTTTTTTTTCAAAACTAAATTCCGAATTTATTTTCTGAGTTAGAGCGTTTTGGATTACGATATGTCAAAGGCGCTAGCTAAAAGTTTCTTTGCGGGTCTCCAGCGGGATTCCTTTGTTGCGTTTTCGAAATTCGATTGTCAATTTTTTGCGCTTTTTTGATGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>499 174 128 84 54 38 13 10</canonical_bands>
                <polymorphic_bands>673 128 84 54 38 13 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAAAACTGAGAAGAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>AATATCTCTTCTCCACCACAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAAAACTGAGAAGAAAGTGACGATGATGAAGAAATTTGAAGGTATTCGGAGATTTCCGGAAACTTGGTTTGCGTATATAATTCATGAATCATCATCGTGCTTGTGTGTGTTTTGGGGCACCGGAAGAAAGTTGATATGGGGAGGCTAACAACAAGTACAAAGTTTAGAAAGATCCGGAAATCGGGAGAGATATGAGGGGGCGAAGATGAATTTTGTGATTCTGATTTGTGGTGGAGAAGAGATATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAAAACTGAGAAGAAAGTGACGATGATGAAGAAATTTGAAGGTATTCGRAGATTTCCGGAAACTTGGTTTGCGTATATAATTCATGAATCATCATCGTGCTTGTGTGTGTTTTGGGGCACCGGAAGAAAGTTGATATGGGGAGGCTAACAACAAGTACAAAGTTTAGAAAGATCCGGAAATCGGGAGAGATATGAGGGGGCGAAGATGAATTTTGTGATTCTGATTTGTGGTGGAGAAGAGATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9069</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>191365</contig_pos>
        <strand>+</strand>
        <context>TGTGTGTTTT[G/T]GGGCACCGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGGTTTGCGTATATAATTCATGAATCATCATCGTGCTTGTGTGTGTTTT</left_flank>
        <right_flank>GGGCACCGGAAGAAAGTTGATATGGGGAGGCTAACAACAAGTACAAAGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTAAGCGTACTTACCGACGACTACGGCAATTAGTAGGAGAAGCATGGAAAACAGCGTTAGCTGGAAGGACATGTCGGTGCAATGAATGAAGCTTCGATGGGCGGAGCCTCGACACGTTGAGCAGAAATCTATGACGGGTAAATTTGAAGACGCGACGGCGAGCGATATTCCACACCCTTACTTAGAATCAAAGTTTTTGTGTGAAAAAACGAAGAGAGTCGTAAGAAAAGACAAAAAAGGGGCGGAGACGGTTCCTTGGCGGAGTTTGAAATGAGATAGGGCGCGGCTTGTATAGTGCTAATGAACGGAAAGTAAGCGAGAAGATGACTTTTGAAGATGAGCTGCTTGCACATGAAAAGTTGGCTTACGTTTTGCGTTATTTTGAAAACTGAGAAGAAAGTGACGATGATGAAGAAATTTGAAGGTATTCGGAGATTTCCGGAAACTTGGTTTGCGTATATAATTCATGAATCATCATCGTGCTTGTGTGTGTTTTGGGGCACCGGAAGAAAGTTGATATGGGGAGGCTAACAACAAGTACAAAGTTTAGAAAGATCCGGAAATCGGGAGAGATATGAGGGGGCGAAGATGAATTTTGTGATTCTGATTTGTGGTGGAGAAGAGATATTTTGAAAATAAAGAAGGGATCGAAAGAATCAGAATATTCAAGGTGATAGAATCTAGACTACTGTGGTCGGAGGTGTTCGGAACAAAACTCGAATTTAAAAATTAACAAAAATTCGAGCGTTTTGGAGAATATTCCCAAAGGTTTTTTTTCAAAACTAAATTCCGAATTTATTTTCTGAGTTAGAGCGTTTTGGATTACGATATGTCAAAGGCGCTAGCTAAAAGTTTCTTTGCGGGTCTCCAGCGGGATTCCTTTGTTGCGTTTTCGAAATTCGATTGTCAATTTTTTGCGCTTTTTTGATGGGACGGTGGGATTCCGAATATCCGACTATCCCTATTCAAAAATTTTGAAACTTGGAATTTTCGACAT</canonical>
            <polymorphic>GTTTTAAGCGTACTTACCGACGACTACGGCAATTAGTAGGAGAAGCATGGAAAACAGCGTTAGCTGGAAGGACATGTCGGTGCAATGAATGAAGCTTCGATGGGCGGAGCCTCGACACGTTGAGCAGAAATCTATGACGGGTAAATTTGAAGACGCGACGGCGAGCGATATTCCACACCCTTACTTAGAATCAAAGTTTTTGTGTGAAAAAACGAAGAGAGTCGTAAGAAAAGACAAAAAAGGGGCGGAGACGGTTCCTTGGCGGAGTTTGAAATGAGATAGGGCGCGGCTTGTATAGTGCTAATGAACGGAAAGTAAGCGAGAAGATGACTTTTGAAGATGAGCTGCTTGCACATGAAAAGTTGGCTTACGTTTTGCGTTATTTTGAAAACTGAGAAGAAAGTGACGATGATGAAGAAATTTGAAGGTATTCGGAGATTTCCGGAAACTTGGTTTGCGTATATAATTCATGAATCATCATCGTGCTTGTGTGTGTTTTKGGGCACCGGAAGAAAGTTGATATGGGGAGGCTAACAACAAGTACAAAGTTTAGAAAGATCCGGAAATCGGGAGAGATATGAGGGGGCGAAGATGAATTTTGTGATTCTGATTTGTGGTGGAGAAGAGATATTTTGAAAATAAAGAAGGGATCGAAAGAATCAGAATATTCAAGGTGATAGAATCTAGACTACTGTGGTCGGAGGTGTTCGGAACAAAACTCGAATTTAAAAATTAACAAAAATTCGAGCGTTTTGGAGAATATTCCCAAAGGTTTTTTTTCAAAACTAAATTCCGAATTTATTTTCTGAGTTAGAGCGTTTTGGATTACGATATGTCAAAGGCGCTAGCTAAAAGTTTCTTTGCGGGTCTCCAGCGGGATTCCTTTGTTGCGTTTTCGAAATTCGATTGTCAATTTTTTGCGCTTTTTTGATGGGACGGTGGGATTCCGAATATCCGACTATCCCTATTCAAAAATTTTGAAACTTGGAATTTTCGACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAAAACTGAGAAGAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>AATATCTCTTCTCCACCACAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAAAACTGAGAAGAAAGTGACGATGATGAAGAAATTTGAAGGTATTCGGAGATTTCCGGAAACTTGGTTTGCGTATATAATTCATGAATCATCATCGTGCTTGTGTGTGTTTTGGGGCACCGGAAGAAAGTTGATATGGGGAGGCTAACAACAAGTACAAAGTTTAGAAAGATCCGGAAATCGGGAGAGATATGAGGGGGCGAAGATGAATTTTGTGATTCTGATTTGTGGTGGAGAAGAGATATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAAAACTGAGAAGAAAGTGACGATGATGAAGAAATTTGAAGGTATTCGGAGATTTCCGGAAACTTGGTTTGCGTATATAATTCATGAATCATCATCGTGCTTGTGTGTGTTTTKGGGCACCGGAAGAAAGTTGATATGGGGAGGCTAACAACAAGTACAAAGTTTAGAAAGATCCGGAAATCGGGAGAGATATGAGGGGGCGAAGATGAATTTTGTGATTCTGATTTGTGGTGGAGAAGAGATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9070</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>191389</contig_pos>
        <strand>+</strand>
        <context>AAGTTGATAT[A/G]GGGAGGCTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCATCATCGTGCTTGTGTGTGTTTTGGGGCACCGGAAGAAAGTTGATAT</left_flank>
        <right_flank>GGGAGGCTAACAACAAGTACAAAGTTTAGAAAGATCCGGAAATCGGGAGA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACGGCAATTAGTAGGAGAAGCATGGAAAACAGCGTTAGCTGGAAGGACATGTCGGTGCAATGAATGAAGCTTCGATGGGCGGAGCCTCGACACGTTGAGCAGAAATCTATGACGGGTAAATTTGAAGACGCGACGGCGAGCGATATTCCACACCCTTACTTAGAATCAAAGTTTTTGTGTGAAAAAACGAAGAGAGTCGTAAGAAAAGACAAAAAAGGGGCGGAGACGGTTCCTTGGCGGAGTTTGAAATGAGATAGGGCGCGGCTTGTATAGTGCTAATGAACGGAAAGTAAGCGAGAAGATGACTTTTGAAGATGAGCTGCTTGCACATGAAAAGTTGGCTTACGTTTTGCGTTATTTTGAAAACTGAGAAGAAAGTGACGATGATGAAGAAATTTGAAGGTATTCGGAGATTTCCGGAAACTTGGTTTGCGTATATAATTCATGAATCATCATCGTGCTTGTGTGTGTTTTGGGGCACCGGAAGAAAGTTGATATGGGGAGGCTAACAACAAGTACAAAGTTTAGAAAGATCCGGAAATCGGGAGAGATATGAGGGGGCGAAGATGAATTTTGTGATTCTGATTTGTGGTGGAGAAGAGATATTTTGAAAATAAAGAAGGGATCGAAAGAATCAGAATATTCAAGGTGATAGAATCTAGACTACTGTGGTCGGAGGTGTTCGGAACAAAACTCGAATTTAAAAATTAACAAAAATTCGAGCGTTTTGGAGAATATTCCCAAAGGTTTTTTTTCAAAACTAAATTCCGAATTTATTTTCTGAGTTAGAGCGTTTTGGATTACGATATGTCAAAGGCGCTAGCTAAAAGTTTCTTTGCGGGTCTCCAGCGGGATTCCTTTGTTGCGTTTTCGAAATTCGATTGTCAATTTTTTGCGCTTTTTTGATGGGACGGTGGGATTCCGAATATCCGACTATCCCTATTCAAAAATTTTGAAACTTGGAATTTTCGACATTTCGAAATTCTAGAATTCTAAGGT</canonical>
            <polymorphic>TACGGCAATTAGTAGGAGAAGCATGGAAAACAGCGTTAGCTGGAAGGACATGTCGGTGCAATGAATGAAGCTTCGATGGGCGGAGCCTCGACACGTTGAGCAGAAATCTATGACGGGTAAATTTGAAGACGCGACGGCGAGCGATATTCCACACCCTTACTTAGAATCAAAGTTTTTGTGTGAAAAAACGAAGAGAGTCGTAAGAAAAGACAAAAAAGGGGCGGAGACGGTTCCTTGGCGGAGTTTGAAATGAGATAGGGCGCGGCTTGTATAGTGCTAATGAACGGAAAGTAAGCGAGAAGATGACTTTTGAAGATGAGCTGCTTGCACATGAAAAGTTGGCTTACGTTTTGCGTTATTTTGAAAACTGAGAAGAAAGTGACGATGATGAAGAAATTTGAAGGTATTCGGAGATTTCCGGAAACTTGGTTTGCGTATATAATTCATGAATCATCATCGTGCTTGTGTGTGTTTTGGGGCACCGGAAGAAAGTTGATATRGGGAGGCTAACAACAAGTACAAAGTTTAGAAAGATCCGGAAATCGGGAGAGATATGAGGGGGCGAAGATGAATTTTGTGATTCTGATTTGTGGTGGAGAAGAGATATTTTGAAAATAAAGAAGGGATCGAAAGAATCAGAATATTCAAGGTGATAGAATCTAGACTACTGTGGTCGGAGGTGTTCGGAACAAAACTCGAATTTAAAAATTAACAAAAATTCGAGCGTTTTGGAGAATATTCCCAAAGGTTTTTTTTCAAAACTAAATTCCGAATTTATTTTCTGAGTTAGAGCGTTTTGGATTACGATATGTCAAAGGCGCTAGCTAAAAGTTTCTTTGCGGGTCTCCAGCGGGATTCCTTTGTTGCGTTTTCGAAATTCGATTGTCAATTTTTTGCGCTTTTTTGATGGGACGGTGGGATTCCGAATATCCGACTATCCCTATTCAAAAATTTTGAAACTTGGAATTTTCGACATTTCGAAATTCTAGAATTCTAAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAAAACTGAGAAGAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>AATATCTCTTCTCCACCACAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAAAACTGAGAAGAAAGTGACGATGATGAAGAAATTTGAAGGTATTCGGAGATTTCCGGAAACTTGGTTTGCGTATATAATTCATGAATCATCATCGTGCTTGTGTGTGTTTTGGGGCACCGGAAGAAAGTTGATATGGGGAGGCTAACAACAAGTACAAAGTTTAGAAAGATCCGGAAATCGGGAGAGATATGAGGGGGCGAAGATGAATTTTGTGATTCTGATTTGTGGTGGAGAAGAGATATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAAAACTGAGAAGAAAGTGACGATGATGAAGAAATTTGAAGGTATTCGGAGATTTCCGGAAACTTGGTTTGCGTATATAATTCATGAATCATCATCGTGCTTGTGTGTGTTTTGGGGCACCGGAAGAAAGTTGATATRGGGAGGCTAACAACAAGTACAAAGTTTAGAAAGATCCGGAAATCGGGAGAGATATGAGGGGGCGAAGATGAATTTTGTGATTCTGATTTGTGGTGGAGAAGAGATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9071</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>191519</contig_pos>
        <strand>+</strand>
        <context>GAAGGGATCG[A/G]AAGAATCAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCTGATTTGTGGTGGAGAAGAGATATTTTGAAAATAAAGAAGGGATCG</left_flank>
        <right_flank>AAGAATCAGAATATTCAAGGTGATAGAATCTAGACTACTGTGGTCGGAGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGACGGCGAGCGATATTCCACACCCTTACTTAGAATCAAAGTTTTTGTGTGAAAAAACGAAGAGAGTCGTAAGAAAAGACAAAAAAGGGGCGGAGACGGTTCCTTGGCGGAGTTTGAAATGAGATAGGGCGCGGCTTGTATAGTGCTAATGAACGGAAAGTAAGCGAGAAGATGACTTTTGAAGATGAGCTGCTTGCACATGAAAAGTTGGCTTACGTTTTGCGTTATTTTGAAAACTGAGAAGAAAGTGACGATGATGAAGAAATTTGAAGGTATTCGGAGATTTCCGGAAACTTGGTTTGCGTATATAATTCATGAATCATCATCGTGCTTGTGTGTGTTTTGGGGCACCGGAAGAAAGTTGATATGGGGAGGCTAACAACAAGTACAAAGTTTAGAAAGATCCGGAAATCGGGAGAGATATGAGGGGGCGAAGATGAATTTTGTGATTCTGATTTGTGGTGGAGAAGAGATATTTTGAAAATAAAGAAGGGATCGAAAGAATCAGAATATTCAAGGTGATAGAATCTAGACTACTGTGGTCGGAGGTGTTCGGAACAAAACTCGAATTTAAAAATTAACAAAAATTCGAGCGTTTTGGAGAATATTCCCAAAGGTTTTTTTTCAAAACTAAATTCCGAATTTATTTTCTGAGTTAGAGCGTTTTGGATTACGATATGTCAAAGGCGCTAGCTAAAAGTTTCTTTGCGGGTCTCCAGCGGGATTCCTTTGTTGCGTTTTCGAAATTCGATTGTCAATTTTTTGCGCTTTTTTGATGGGACGGTGGGATTCCGAATATCCGACTATCCCTATTCAAAAATTTTGAAACTTGGAATTTTCGACATTTCGAAATTCTAGAATTCTAAGGTCGGAATAATCCGAAGTTTCAAAACTCGGAATTCTCGATATTACAAGATATTCAGCAAATACCAATCAGAACAGCCGTGAACTACTGCTGATTTTTTTTACCCTTGGAAAGCGTTTTTCGGAGACTAGACT</canonical>
            <polymorphic>GCGACGGCGAGCGATATTCCACACCCTTACTTAGAATCAAAGTTTTTGTGTGAAAAAACGAAGAGAGTCGTAAGAAAAGACAAAAAAGGGGCGGAGACGGTTCCTTGGCGGAGTTTGAAATGAGATAGGGCGCGGCTTGTATAGTGCTAATGAACGGAAAGTAAGCGAGAAGATGACTTTTGAAGATGAGCTGCTTGCACATGAAAAGTTGGCTTACGTTTTGCGTTATTTTGAAAACTGAGAAGAAAGTGACGATGATGAAGAAATTTGAAGGTATTCGGAGATTTCCGGAAACTTGGTTTGCGTATATAATTCATGAATCATCATCGTGCTTGTGTGTGTTTTGGGGCACCGGAAGAAAGTTGATATGGGGAGGCTAACAACAAGTACAAAGTTTAGAAAGATCCGGAAATCGGGAGAGATATGAGGGGGCGAAGATGAATTTTGTGATTCTGATTTGTGGTGGAGAAGAGATATTTTGAAAATAAAGAAGGGATCGRAAGAATCAGAATATTCAAGGTGATAGAATCTAGACTACTGTGGTCGGAGGTGTTCGGAACAAAACTCGAATTTAAAAATTAACAAAAATTCGAGCGTTTTGGAGAATATTCCCAAAGGTTTTTTTTCAAAACTAAATTCCGAATTTATTTTCTGAGTTAGAGCGTTTTGGATTACGATATGTCAAAGGCGCTAGCTAAAAGTTTCTTTGCGGGTCTCCAGCGGGATTCCTTTGTTGCGTTTTCGAAATTCGATTGTCAATTTTTTGCGCTTTTTTGATGGGACGGTGGGATTCCGAATATCCGACTATCCCTATTCAAAAATTTTGAAACTTGGAATTTTCGACATTTCGAAATTCTAGAATTCTAAGGTCGGAATAATCCGAAGTTTCAAAACTCGGAATTCTCGATATTACAAGATATTCAGCAAATACCAATCAGAACAGCCGTGAACTACTGCTGATTTTTTTTACCCTTGGAAAGCGTTTTTCGGAGACTAGACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 152 95 91 69 56 24 8 7</canonical_bands>
                <polymorphic_bands>567 152 95 91 56 24 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGCTAACAACAAGTACAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTTTAAATTCGAGTTTTGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>205</pcr_amplicon_size>
		<canonical_amplicon>GAGGCTAACAACAAGTACAAAGTTTAGAAAGATCCGGAAATCGGGAGAGATATGAGGGGGCGAAGATGAATTTTGTGATTCTGATTTGTGGTGGAGAAGAGATATTTTGAAAATAAAGAAGGGATCGAAAGAATCAGAATATTCAAGGTGATAGAATCTAGACTACTGTGGTCGGAGGTGTTCGGAACAAAACTCGAATTTAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAGGCTAACAACAAGTACAAAGTTTAGAAAGATCCGGAAATCGGGAGAGATATGAGGGGGCGAAGATGAATTTTGTGATTCTGATTTGTGGTGGAGAAGAGATATTTTGAAAATAAAGAAGGGATCGRAAGAATCAGAATATTCAAGGTGATAGAATCTAGACTACTGTGGTCGGAGGTGTTCGGAACAAAACTCGAATTTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9072</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>191632</contig_pos>
        <strand></strand>
        <context>agaatattcc[C/A]aaaggttttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AACTCGAATTTAAAAATTAACAAAAATTCGAGCGTTTTGGAGAATATTCC</left_flank>
        <right_flank>AAAGGTTTTTTTTCAAAACTAAATTCCGAATTTATTTTCTGAGTTAGAGC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAAATGAGATAGGGCGCGGCTTGTATAGTGCTAATGAACGGAAAGTAAGCGAGAAGATGACTTTTGAAGATGAGCTGCTTGCACATGAAAAGTTGGCTTACGTTTTGCGTTATTTTGAAAACTGAGAAGAAAGTGACGATGATGAAGAAATTTGAAGGTATTCGGAGATTTCCGGAAACTTGGTTTGCGTATATAATTCATGAATCATCATCGTGCTTGTGTGTGTTTTGGGGCACCGGAAGAAAGTTGATATGGGGAGGCTAACAACAAGTACAAAGTTTAGAAAGATCCGGAAATCGGGAGAGATATGAGGGGGCGAAGATGAATTTTGTGATTCTGATTTGTGGTGGAGAAGAGATATTTTGAAAATAAAGAAGGGATCGAAAGAATCAGAATATTCAAGGTGATAGAATCTAGACTACTGTGGTCGGAGGTGTTCGGAACAAAACTCGAATTTAAAAATTAACAAAAATTCGAGCGTTTTGGAGAATATTCCCAAAGGTTTTTTTTCAAAACTAAATTCCGAATTTATTTTCTGAGTTAGAGCGTTTTGGATTACGATATGTCAAAGGCGCTAGCTAAAAGTTTCTTTGCGGGTCTCCAGCGGGATTCCTTTGTTGCGTTTTCGAAATTCGATTGTCAATTTTTTGCGCTTTTTTGATGGGACGGTGGGATTCCGAATATCCGACTATCCCTATTCAAAAATTTTGAAACTTGGAATTTTCGACATTTCGAAATTCTAGAATTCTAAGGTCGGAATAATCCGAAGTTTCAAAACTCGGAATTCTCGATATTACAAGATATTCAGCAAATACCAATCAGAACAGCCGTGAACTACTGCTGATTTTTTTTACCCTTGGAAAGCGTTTTTCGGAGACTAGACTTTAATTGGAATTGATTTTCCTACAGTAATCCGATCAAGACGATTTCTCAAAATTGAACCTAGAATACCGGTCAACAAGATGAACGAAAACCTATGTTTCAGATGATTAATGTC</canonical>
            <polymorphic>TTTGAAATGAGATAGGGCGCGGCTTGTATAGTGCTAATGAACGGAAAGTAAGCGAGAAGATGACTTTTGAAGATGAGCTGCTTGCACATGAAAAGTTGGCTTACGTTTTGCGTTATTTTGAAAACTGAGAAGAAAGTGACGATGATGAAGAAATTTGAAGGTATTCGGAGATTTCCGGAAACTTGGTTTGCGTATATAATTCATGAATCATCATCGTGCTTGTGTGTGTTTTGGGGCACCGGAAGAAAGTTGATATGGGGAGGCTAACAACAAGTACAAAGTTTAGAAAGATCCGGAAATCGGGAGAGATATGAGGGGGCGAAGATGAATTTTGTGATTCTGATTTGTGGTGGAGAAGAGATATTTTGAAAATAAAGAAGGGATCGAAAGAATCAGAATATTCAAGGTGATAGAATCTAGACTACTGTGGTCGGAGGTGTTCGGAACAAAACTCGAATTTAAAAATTAACAAAAATTCGAGCGTTTTGGAGAATATTCCMAAAGGTTTTTTTTCAAAACTAAATTCCGAATTTATTTTCTGAGTTAGAGCGTTTTGGATTACGATATGTCAAAGGCGCTAGCTAAAAGTTTCTTTGCGGGTCTCCAGCGGGATTCCTTTGTTGCGTTTTCGAAATTCGATTGTCAATTTTTTGCGCTTTTTTGATGGGACGGTGGGATTCCGAATATCCGACTATCCCTATTCAAAAATTTTGAAACTTGGAATTTTCGACATTTCGAAATTCTAGAATTCTAAGGTCGGAATAATCCGAAGTTTCAAAACTCGGAATTCTCGATATTACAAGATATTCAGCAAATACCAATCAGAACAGCCGTGAACTACTGCTGATTTTTTTTACCCTTGGAAAGCGTTTTTCGGAGACTAGACTTTAATTGGAATTGATTTTCCTACAGTAATCCGATCAAGACGATTTCTCAAAATTGAACCTAGAATACCGGTCAACAAGATGAACGAAAACCTATGTTTCAGATGATTAATGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAAACTCGAATTTAAAAATTAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTAAAGTCTAGTCTCCGAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>447</pcr_amplicon_size>
		<canonical_amplicon>ACAAAACTCGAATTTAAAAATTAACAAAAATTCGAGCGTTTTGGAGAATATTCCCAAAGGTTTTTTTTCAAAACTAAATTCCGAATTTATTTTCTGAGTTAGAGCGTTTTGGATTACGATATGTCAAAGGCGCTAGCTAAAAGTTTCTTTGCGGGTCTCCAGCGGGATTCCTTTGTTGCGTTTTCGAAATTCGATTGTCAATTTTTTGCGCTTTTTTGATGGGACGGTGGGATTCCGAATATCCGACTATCCCTATTCAAAAATTTTGAAACTTGGAATTTTCGACATTTCGAAATTCTAGAATTCTAAGGTCGGAATAATCCGAAGTTTCAAAACTCGGAATTCTCGATATTACAAGATATTCAGCAAATACCAATCAGAACAGCCGTGAACTACTGCTGATTTTTTTTACCCTTGGAAAGCGTTTTTCGGAGACTAGACTTTAAT</canonical_amplicon>
		<polymorphic_amplicon>ACAAAACTCGAATTTAAAAATTAACAAAAATTCGAGCGTTTTGGAGAATATTCCMAAAGGTTTTTTTTCAAAACTAAATTCCGAATTTATTTTCTGAGTTAGAGCGTTTTGGATTACGATATGTCAAAGGCGCTAGCTAAAAGTTTCTTTGCGGGTCTCCAGCGGGATTCCTTTGTTGCGTTTTCGAAATTCGATTGTCAATTTTTTGCGCTTTTTTGATGGGACGGTGGGATTCCGAATATCCGACTATCCCTATTCAAAAATTTTGAAACTTGGAATTTTCGACATTTCGAAATTCTAGAATTCTAAGGTCGGAATAATCCGAAGTTTCAAAACTCGGAATTCTCGATATTACAAGATATTCAGCAAATACCAATCAGAACAGCCGTGAACTACTGCTGATTTTTTTTACCCTTGGAAAGCGTTTTTCGGAGACTAGACTTTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9074</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>191696</contig_pos>
        <strand></strand>
        <context>ttggattacg[A/T]watgtcaaag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAAACTAAATTCCGAATTTATTTTCTGAGTTAGAGCGTTTTGGATTACG</left_flank>
        <right_flank>TATGTCAAAGGCGCTAGCTAAAAGTTTCTTTGCGGGTCTCCAGCGGGATT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGAAGATGAGCTGCTTGCACATGAAAAGTTGGCTTACGTTTTGCGTTATTTTGAAAACTGAGAAGAAAGTGACGATGATGAAGAAATTTGAAGGTATTCGGAGATTTCCGGAAACTTGGTTTGCGTATATAATTCATGAATCATCATCGTGCTTGTGTGTGTTTTGGGGCACCGGAAGAAAGTTGATATGGGGAGGCTAACAACAAGTACAAAGTTTAGAAAGATCCGGAAATCGGGAGAGATATGAGGGGGCGAAGATGAATTTTGTGATTCTGATTTGTGGTGGAGAAGAGATATTTTGAAAATAAAGAAGGGATCGAAAGAATCAGAATATTCAAGGTGATAGAATCTAGACTACTGTGGTCGGAGGTGTTCGGAACAAAACTCGAATTTAAAAATTAACAAAAATTCGAGCGTTTTGGAGAATATTCCCAAAGGTTTTTTTTCAAAACTAAATTCCGAATTTATTTTCTGAGTTAGAGCGTTTTGGATTACGATATGTCAAAGGCGCTAGCTAAAAGTTTCTTTGCGGGTCTCCAGCGGGATTCCTTTGTTGCGTTTTCGAAATTCGATTGTCAATTTTTTGCGCTTTTTTGATGGGACGGTGGGATTCCGAATATCCGACTATCCCTATTCAAAAATTTTGAAACTTGGAATTTTCGACATTTCGAAATTCTAGAATTCTAAGGTCGGAATAATCCGAAGTTTCAAAACTCGGAATTCTCGATATTACAAGATATTCAGCAAATACCAATCAGAACAGCCGTGAACTACTGCTGATTTTTTTTACCCTTGGAAAGCGTTTTTCGGAGACTAGACTTTAATTGGAATTGATTTTCCTACAGTAATCCGATCAAGACGATTTCTCAAAATTGAACCTAGAATACCGGTCAACAAGATGAACGAAAACCTATGTTTCAGATGATTAATGTCTGCTCTAACCATTTTCAGATAATTTTTCTGAAGTAATTCAACCAAATGCATTCTAAATCAAAGC</canonical>
            <polymorphic>TTTTGAAGATGAGCTGCTTGCACATGAAAAGTTGGCTTACGTTTTGCGTTATTTTGAAAACTGAGAAGAAAGTGACGATGATGAAGAAATTTGAAGGTATTCGGAGATTTCCGGAAACTTGGTTTGCGTATATAATTCATGAATCATCATCGTGCTTGTGTGTGTTTTGGGGCACCGGAAGAAAGTTGATATGGGGAGGCTAACAACAAGTACAAAGTTTAGAAAGATCCGGAAATCGGGAGAGATATGAGGGGGCGAAGATGAATTTTGTGATTCTGATTTGTGGTGGAGAAGAGATATTTTGAAAATAAAGAAGGGATCGAAAGAATCAGAATATTCAAGGTGATAGAATCTAGACTACTGTGGTCGGAGGTGTTCGGAACAAAACTCGAATTTAAAAATTAACAAAAATTCGAGCGTTTTGGAGAATATTCCCAAAGGTTTTTTTTCAAAACTAAATTCCGAATTTATTTTCTGAGTTAGAGCGTTTTGGATTACGWTATGTCAAAGGCGCTAGCTAAAAGTTTCTTTGCGGGTCTCCAGCGGGATTCCTTTGTTGCGTTTTCGAAATTCGATTGTCAATTTTTTGCGCTTTTTTGATGGGACGGTGGGATTCCGAATATCCGACTATCCCTATTCAAAAATTTTGAAACTTGGAATTTTCGACATTTCGAAATTCTAGAATTCTAAGGTCGGAATAATCCGAAGTTTCAAAACTCGGAATTCTCGATATTACAAGATATTCAGCAAATACCAATCAGAACAGCCGTGAACTACTGCTGATTTTTTTTACCCTTGGAAAGCGTTTTTCGGAGACTAGACTTTAATTGGAATTGATTTTCCTACAGTAATCCGATCAAGACGATTTCTCAAAATTGAACCTAGAATACCGGTCAACAAGATGAACGAAAACCTATGTTTCAGATGATTAATGTCTGCTCTAACCATTTTCAGATAATTTTTCTGAAGTAATTCAACCAAATGCATTCTAAATCAAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAAACTCGAATTTAAAAATTAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTAAAGTCTAGTCTCCGAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>447</pcr_amplicon_size>
		<canonical_amplicon>ACAAAACTCGAATTTAAAAATTAACAAAAATTCGAGCGTTTTGGAGAATATTCCCAAAGGTTTTTTTTCAAAACTAAATTCCGAATTTATTTTCTGAGTTAGAGCGTTTTGGATTACGATATGTCAAAGGCGCTAGCTAAAAGTTTCTTTGCGGGTCTCCAGCGGGATTCCTTTGTTGCGTTTTCGAAATTCGATTGTCAATTTTTTGCGCTTTTTTGATGGGACGGTGGGATTCCGAATATCCGACTATCCCTATTCAAAAATTTTGAAACTTGGAATTTTCGACATTTCGAAATTCTAGAATTCTAAGGTCGGAATAATCCGAAGTTTCAAAACTCGGAATTCTCGATATTACAAGATATTCAGCAAATACCAATCAGAACAGCCGTGAACTACTGCTGATTTTTTTTACCCTTGGAAAGCGTTTTTCGGAGACTAGACTTTAAT</canonical_amplicon>
		<polymorphic_amplicon>ACAAAACTCGAATTTAAAAATTAACAAAAATTCGAGCGTTTTGGAGAATATTCCCAAAGGTTTTTTTTCAAAACTAAATTCCGAATTTATTTTCTGAGTTAGAGCGTTTTGGATTACGWTATGTCAAAGGCGCTAGCTAAAAGTTTCTTTGCGGGTCTCCAGCGGGATTCCTTTGTTGCGTTTTCGAAATTCGATTGTCAATTTTTTGCGCTTTTTTGATGGGACGGTGGGATTCCGAATATCCGACTATCCCTATTCAAAAATTTTGAAACTTGGAATTTTCGACATTTCGAAATTCTAGAATTCTAAGGTCGGAATAATCCGAAGTTTCAAAACTCGGAATTCTCGATATTACAAGATATTCAGCAAATACCAATCAGAACAGCCGTGAACTACTGCTGATTTTTTTTACCCTTGGAAAGCGTTTTTCGGAGACTAGACTTTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9075</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>191697</contig_pos>
        <strand></strand>
        <context>tggattacgw[T/A]atgtcaaagg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAAACTAAATTCCGAATTTATTTTCTGAGTTAGAGCGTTTTGGATTACGA</left_flank>
        <right_flank>ATGTCAAAGGCGCTAGCTAAAAGTTTCTTTGCGGGTCTCCAGCGGGATTC</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAAGATGAGCTGCTTGCACATGAAAAGTTGGCTTACGTTTTGCGTTATTTTGAAAACTGAGAAGAAAGTGACGATGATGAAGAAATTTGAAGGTATTCGGAGATTTCCGGAAACTTGGTTTGCGTATATAATTCATGAATCATCATCGTGCTTGTGTGTGTTTTGGGGCACCGGAAGAAAGTTGATATGGGGAGGCTAACAACAAGTACAAAGTTTAGAAAGATCCGGAAATCGGGAGAGATATGAGGGGGCGAAGATGAATTTTGTGATTCTGATTTGTGGTGGAGAAGAGATATTTTGAAAATAAAGAAGGGATCGAAAGAATCAGAATATTCAAGGTGATAGAATCTAGACTACTGTGGTCGGAGGTGTTCGGAACAAAACTCGAATTTAAAAATTAACAAAAATTCGAGCGTTTTGGAGAATATTCCCAAAGGTTTTTTTTCAAAACTAAATTCCGAATTTATTTTCTGAGTTAGAGCGTTTTGGATTACGATATGTCAAAGGCGCTAGCTAAAAGTTTCTTTGCGGGTCTCCAGCGGGATTCCTTTGTTGCGTTTTCGAAATTCGATTGTCAATTTTTTGCGCTTTTTTGATGGGACGGTGGGATTCCGAATATCCGACTATCCCTATTCAAAAATTTTGAAACTTGGAATTTTCGACATTTCGAAATTCTAGAATTCTAAGGTCGGAATAATCCGAAGTTTCAAAACTCGGAATTCTCGATATTACAAGATATTCAGCAAATACCAATCAGAACAGCCGTGAACTACTGCTGATTTTTTTTACCCTTGGAAAGCGTTTTTCGGAGACTAGACTTTAATTGGAATTGATTTTCCTACAGTAATCCGATCAAGACGATTTCTCAAAATTGAACCTAGAATACCGGTCAACAAGATGAACGAAAACCTATGTTTCAGATGATTAATGTCTGCTCTAACCATTTTCAGATAATTTTTCTGAAGTAATTCAACCAAATGCATTCTAAATCAAAGCT</canonical>
            <polymorphic>TTTGAAGATGAGCTGCTTGCACATGAAAAGTTGGCTTACGTTTTGCGTTATTTTGAAAACTGAGAAGAAAGTGACGATGATGAAGAAATTTGAAGGTATTCGGAGATTTCCGGAAACTTGGTTTGCGTATATAATTCATGAATCATCATCGTGCTTGTGTGTGTTTTGGGGCACCGGAAGAAAGTTGATATGGGGAGGCTAACAACAAGTACAAAGTTTAGAAAGATCCGGAAATCGGGAGAGATATGAGGGGGCGAAGATGAATTTTGTGATTCTGATTTGTGGTGGAGAAGAGATATTTTGAAAATAAAGAAGGGATCGAAAGAATCAGAATATTCAAGGTGATAGAATCTAGACTACTGTGGTCGGAGGTGTTCGGAACAAAACTCGAATTTAAAAATTAACAAAAATTCGAGCGTTTTGGAGAATATTCCCAAAGGTTTTTTTTCAAAACTAAATTCCGAATTTATTTTCTGAGTTAGAGCGTTTTGGATTACGAWATGTCAAAGGCGCTAGCTAAAAGTTTCTTTGCGGGTCTCCAGCGGGATTCCTTTGTTGCGTTTTCGAAATTCGATTGTCAATTTTTTGCGCTTTTTTGATGGGACGGTGGGATTCCGAATATCCGACTATCCCTATTCAAAAATTTTGAAACTTGGAATTTTCGACATTTCGAAATTCTAGAATTCTAAGGTCGGAATAATCCGAAGTTTCAAAACTCGGAATTCTCGATATTACAAGATATTCAGCAAATACCAATCAGAACAGCCGTGAACTACTGCTGATTTTTTTTACCCTTGGAAAGCGTTTTTCGGAGACTAGACTTTAATTGGAATTGATTTTCCTACAGTAATCCGATCAAGACGATTTCTCAAAATTGAACCTAGAATACCGGTCAACAAGATGAACGAAAACCTATGTTTCAGATGATTAATGTCTGCTCTAACCATTTTCAGATAATTTTTCTGAAGTAATTCAACCAAATGCATTCTAAATCAAAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAAACTCGAATTTAAAAATTAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTAAAGTCTAGTCTCCGAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>447</pcr_amplicon_size>
		<canonical_amplicon>ACAAAACTCGAATTTAAAAATTAACAAAAATTCGAGCGTTTTGGAGAATATTCCCAAAGGTTTTTTTTCAAAACTAAATTCCGAATTTATTTTCTGAGTTAGAGCGTTTTGGATTACGATATGTCAAAGGCGCTAGCTAAAAGTTTCTTTGCGGGTCTCCAGCGGGATTCCTTTGTTGCGTTTTCGAAATTCGATTGTCAATTTTTTGCGCTTTTTTGATGGGACGGTGGGATTCCGAATATCCGACTATCCCTATTCAAAAATTTTGAAACTTGGAATTTTCGACATTTCGAAATTCTAGAATTCTAAGGTCGGAATAATCCGAAGTTTCAAAACTCGGAATTCTCGATATTACAAGATATTCAGCAAATACCAATCAGAACAGCCGTGAACTACTGCTGATTTTTTTTACCCTTGGAAAGCGTTTTTCGGAGACTAGACTTTAAT</canonical_amplicon>
		<polymorphic_amplicon>ACAAAACTCGAATTTAAAAATTAACAAAAATTCGAGCGTTTTGGAGAATATTCCCAAAGGTTTTTTTTCAAAACTAAATTCCGAATTTATTTTCTGAGTTAGAGCGTTTTGGATTACGAWATGTCAAAGGCGCTAGCTAAAAGTTTCTTTGCGGGTCTCCAGCGGGATTCCTTTGTTGCGTTTTCGAAATTCGATTGTCAATTTTTTGCGCTTTTTTGATGGGACGGTGGGATTCCGAATATCCGACTATCCCTATTCAAAAATTTTGAAACTTGGAATTTTCGACATTTCGAAATTCTAGAATTCTAAGGTCGGAATAATCCGAAGTTTCAAAACTCGGAATTCTCGATATTACAAGATATTCAGCAAATACCAATCAGAACAGCCGTGAACTACTGCTGATTTTTTTTACCCTTGGAAAGCGTTTTTCGGAGACTAGACTTTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9076</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>192846</contig_pos>
        <strand>+</strand>
        <context>TGATTCATAA[C/T]TTGAAAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCTGATTGTGTACTAGTCGTAATCCTGTGAAGTTACATATGATTCATAA</left_flank>
        <right_flank>TTGAAAAAAAAGGAAAAAAATAAGAAATTATTTTAAGTGATGTAACGAAT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAGGTTTTATCAAGAAATCATTCTCAACTTGGCTGGGTAGGTTGAAATTTCAGAAAATGCACATGGACCAGGAAGTCCAGCTACCCAAAAAAAAGACGAGTCACTAGATCCTTCCTGGATTCCCTCCATTTTTTTTGCTTCTGCATTGTAATCCAGTTAATTTTGTTTTTAGCCCCTCTATGTCTCATCCCTCGGTAGTAAAAGTGTTATTCGAGAAGCTTCATGAATTTTAATCAATTCCGACACTTGGTCTTTGGCTCGAATTCTACATTCAAAACACAACATATGAAAAATATTGGAAAAATATATTTGAATTCATTTTCGGGGGTACTATAGAAACAAGAATCATATTCCCAAAGACGTCATTGCTTACTAAGGAAGAAAAAAAATTGTACTCAATCTCTTGGGATGGACAATGGTCAGAAATCGAGATCATTGTCGCATTCTGTCTGATTGTGTACTAGTCGTAATCCTGTGAAGTTACATATGATTCATAATTTGAAAAAAAAGGAAAAAAATAAGAAATTATTTTAAGTGATGTAACGAATAAATTAAAAGATCTAATGATTTCGAAATTCTTATCATACCCCTCCTAGGTGGTTAATATGCTGTTGGCTTGTAACTGCTGGTCAGAAGTTCGTAGAAGTTTGGCTATTGGACAAATATTGACCAGGTTTTTGTCGCAAGTTGCCGAAAAAACTTCTGCATAGCGGCATACAATTTTTGTTTAAATTTTGCTCAAAAAACATTTCTAGGATCAAAACACTTCTAGAAAATAATTTCTGATGCCTTACACCTTGATCGAGATCATAATAGCAAGTGGGACGTGGAATTTTTAATTTCCTAAAACTGAAACATCCTTCATTTTTGGCATCCTCTATATAACTGATCCGTGATAAATAAATGATGATATGCCGCTTCCGGTTTTGATGAAGTGACATCAGTTTCATCCTGTTTTCTGATTCTGGATCTCTCAAGATTTTTCGAGTTTCAGATTT</canonical>
            <polymorphic>TTTAGGTTTTATCAAGAAATCATTCTCAACTTGGCTGGGTAGGTTGAAATTTCAGAAAATGCACATGGACCAGGAAGTCCAGCTACCCAAAAAAAAGACGAGTCACTAGATCCTTCCTGGATTCCCTCCATTTTTTTTGCTTCTGCATTGTAATCCAGTTAATTTTGTTTTTAGCCCCTCTATGTCTCATCCCTCGGTAGTAAAAGTGTTATTCGAGAAGCTTCATGAATTTTAATCAATTCCGACACTTGGTCTTTGGCTCGAATTCTACATTCAAAACACAACATATGAAAAATATTGGAAAAATATATTTGAATTCATTTTCGGGGGTACTATAGAAACAAGAATCATATTCCCAAAGACGTCATTGCTTACTAAGGAAGAAAAAAAATTGTACTCAATCTCTTGGGATGGACAATGGTCAGAAATCGAGATCATTGTCGCATTCTGTCTGATTGTGTACTAGTCGTAATCCTGTGAAGTTACATATGATTCATAAYTTGAAAAAAAAGGAAAAAAATAAGAAATTATTTTAAGTGATGTAACGAATAAATTAAAAGATCTAATGATTTCGAAATTCTTATCATACCCCTCCTAGGTGGTTAATATGCTGTTGGCTTGTAACTGCTGGTCAGAAGTTCGTAGAAGTTTGGCTATTGGACAAATATTGACCAGGTTTTTGTCGCAAGTTGCCGAAAAAACTTCTGCATAGCGGCATACAATTTTTGTTTAAATTTTGCTCAAAAAACATTTCTAGGATCAAAACACTTCTAGAAAATAATTTCTGATGCCTTACACCTTGATCGAGATCATAATAGCAAGTGGGACGTGGAATTTTTAATTTCCTAAAACTGAAACATCCTTCATTTTTGGCATCCTCTATATAACTGATCCGTGATAAATAAATGATGATATGCCGCTTCCGGTTTTGATGAAGTGACATCAGTTTCATCCTGTTTTCTGATTCTGGATCTCTCAAGATTTTTCGAGTTTCAGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>161 145 113 108 75 67 53 51 47 47 28 26 26 24 12 10 7</canonical_bands>
                <polymorphic_bands>161 145 136 113 75 67 53 51 47 47 26 26 24 12 10 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGAATCATATTCCCAAAGAC</pcr_primer_p1>
		<pcr_primer_p2>TAGGAGGGGTATGATAAGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CAAGAATCATATTCCCAAAGACGTCATTGCTTACTAAGGAAGAAAAAAAATTGTACTCAATCTCTTGGGATGGACAATGGTCAGAAATCGAGATCATTGTCGCATTCTGTCTGATTGTGTACTAGTCGTAATCCTGTGAAGTTACATATGATTCATAATTTGAAAAAAAAGGAAAAAAATAAGAAATTATTTTAAGTGATGTAACGAATAAATTAAAAGATCTAATGATTTCGAAATTCTTATCATACCCCTCCTA</canonical_amplicon>
		<polymorphic_amplicon>CAAGAATCATATTCCCAAAGACGTCATTGCTTACTAAGGAAGAAAAAAAATTGTACTCAATCTCTTGGGATGGACAATGGTCAGAAATCGAGATCATTGTCGCATTCTGTCTGATTGTGTACTAGTCGTAATCCTGTGAAGTTACATATGATTCATAAYTTGAAAAAAAAGGAAAAAAATAAGAAATTATTTTAAGTGATGTAACGAATAAATTAAAAGATCTAATGATTTCGAAATTCTTATCATACCCCTCCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9077</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>192651</contig_pos>
        <strand></strand>
        <context>ATATTGGAAA[A/T]ATATATTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGGCTCGAATTCTACATTCAAAACACAACATATGAAAAATATTGGAAA</left_flank>
        <right_flank>ATATATTTGAATTCATTTTCGGGGGTACTATAGAAACAAGAATCATATTC</right_flank>
        <qual_score>35</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTTTTCTGAAGTAATTCAACCAAATGCATTCTAAATCAAAGCTTGTTATCAAAAGTCACTCAAAGAACTCTCCAGGCGATTTCAAAACACAAAACAGAAGGGATTTTCAGACAACTGCAATGATGGTTCATTGTCTAGCCGCTCTAATTTGATGTTTTTGAATTGTTATCTCTAATCTCTGATATCACTATTTTTAGGTTTTATCAAGAAATCATTCTCAACTTGGCTGGGTAGGTTGAAATTTCAGAAAATGCACATGGACCAGGAAGTCCAGCTACCCAAAAAAAAGACGAGTCACTAGATCCTTCCTGGATTCCCTCCATTTTTTTTGCTTCTGCATTGTAATCCAGTTAATTTTGTTTTTAGCCCCTCTATGTCTCATCCCTCGGTAGTAAAAGTGTTATTCGAGAAGCTTCATGAATTTTAATCAATTCCGACACTTGGTCTTTGGCTCGAATTCTACATTCAAAACACAACATATGAAAAATATTGGAAAAATATATTTGAATTCATTTTCGGGGGTACTATAGAAACAAGAATCATATTCCCAAAGACGTCATTGCTTACTAAGGAAGAAAAAAAATTGTACTCAATCTCTTGGGATGGACAATGGTCAGAAATCGAGATCATTGTCGCATTCTGTCTGATTGTGTACTAGTCGTAATCCTGTGAAGTTACATATGATTCATAATTTGAAAAAAAAGGAAAAAAATAAGAAATTATTTTAAGTGATGTAACGAATAAATTAAAAGATCTAATGATTTCGAAATTCTTATCATACCCCTCCTAGGTGGTTAATATGCTGTTGGCTTGTAACTGCTGGTCAGAAGTTCGTAGAAGTTTGGCTATTGGACAAATATTGACCAGGTTTTTGTCGCAAGTTGCCGAAAAAACTTCTGCATAGCGGCATACAATTTTTGTTTAAATTTTGCTCAAAAAACATTTCTAGGATCAAAACACTTCTAGAAAATAATTTCTGATGCCTTACACCTTGATC</canonical>
            <polymorphic>TAATTTTTCTGAAGTAATTCAACCAAATGCATTCTAAATCAAAGCTTGTTATCAAAAGTCACTCAAAGAACTCTCCAGGCGATTTCAAAACACAAAACAGAAGGGATTTTCAGACAACTGCAATGATGGTTCATTGTCTAGCCGCTCTAATTTGATGTTTTTGAATTGTTATCTCTAATCTCTGATATCACTATTTTTAGGTTTTATCAAGAAATCATTCTCAACTTGGCTGGGTAGGTTGAAATTTCAGAAAATGCACATGGACCAGGAAGTCCAGCTACCCAAAAAAAAGACGAGTCACTAGATCCTTCCTGGATTCCCTCCATTTTTTTTGCTTCTGCATTGTAATCCAGTTAATTTTGTTTTTAGCCCCTCTATGTCTCATCCCTCGGTAGTAAAAGTGTTATTCGAGAAGCTTCATGAATTTTAATCAATTCCGACACTTGGTCTTTGGCTCGAATTCTACATTCAAAACACAACATATGAAAAATATTGGAAAWATATATTTGAATTCATTTTCGGGGGTACTATAGAAACAAGAATCATATTCCCAAAGACGTCATTGCTTACTAAGGAAGAAAAAAAATTGTACTCAATCTCTTGGGATGGACAATGGTCAGAAATCGAGATCATTGTCGCATTCTGTCTGATTGTGTACTAGTCGTAATCCTGTGAAGTTACATATGATTCATAATTTGAAAAAAAAGGAAAAAAATAAGAAATTATTTTAAGTGATGTAACGAATAAATTAAAAGATCTAATGATTTCGAAATTCTTATCATACCCCTCCTAGGTGGTTAATATGCTGTTGGCTTGTAACTGCTGGTCAGAAGTTCGTAGAAGTTTGGCTATTGGACAAATATTGACCAGGTTTTTGTCGCAAGTTGCCGAAAAAACTTCTGCATAGCGGCATACAATTTTTGTTTAAATTTTGCTCAAAAAACATTTCTAGGATCAAAACACTTCTAGAAAATAATTTCTGATGCCTTACACCTTGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTAATCAATTCCGACACTT</pcr_primer_p1>
		<pcr_primer_p2>CACAGGATTACGACTAGTACACA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AATTTTAATCAATTCCGACACTTGGTCTTTGGCTCGAATTCTACATTCAAAACACAACATATGAAAAATATTGGAAAAATATATTTGAATTCATTTTCGGGGGTACTATAGAAACAAGAATCATATTCCCAAAGACGTCATTGCTTACTAAGGAAGAAAAAAAATTGTACTCAATCTCTTGGGATGGACAATGGTCAGAAATCGAGATCATTGTCGCATTCTGTCTGATTGTGTACTAGTCGTAATCCTGTG</canonical_amplicon>
		<polymorphic_amplicon>AATTTTAATCAATTCCGACACTTGGTCTTTGGCTCGAATTCTACATTCAAAACACAACATATGAAAAATATTGGAAAWATATATTTGAATTCATTTTCGGGGGTACTATAGAAACAAGAATCATATTCCCAAAGACGTCATTGCTTACTAAGGAAGAAAAAAAATTGTACTCAATCTCTTGGGATGGACAATGGTCAGAAATCGAGATCATTGTCGCATTCTGTCTGATTGTGTACTAGTCGTAATCCTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9078</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>289946</contig_pos>
        <strand>+</strand>
        <context>TGATTTGTTT[C/T]TTTCCATAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTACTATGCTTATGGAACACAGCTCTTGAATCAATGAGTTGATTTGTTT</left_flank>
        <right_flank>TTTCCATAGGAGAGAAGAATGTCCATTTTTTGGGTCATTATCTAAAAATT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAACTGAAATATAATTTTGAATTCTACATGTAACAAAAAGTCTCTTACGTGATAGATCATAAATTTCCTTCCAGAATTTCCGATGAAGTCACAACTGAATCGATTGGAATTTTTTAGTTGTCGTACCCAGTTGATATCGTTTTTGTACTCTTCTAAATATCAATTATTGGAATTTAAGGGACTTGTCACTAACCTGCGATATAGGTTATTTCCTTTTGTACATCGTCAAATTGAATTCTATACGCGTACATCTCTAAGAAAAATTCGGATGGCTTTAGAAACTTTGCTAACTTTTGCTCTTGATCTTTGGAACCTGAAATATTTGAAAATGCCACTTCACTAATTTTGCCACCAACCTATTTCTAGCGATTCTACGAGTTTAATCGAATTAGGTTTCACGATTTTCTCCAAACACTGATTGAATAGGGGAAGTGTTGATATTCGAGCATTTACTATGCTTATGGAACACAGCTCTTGAATCAATGAGTTGATTTGTTTTTTTCCATAGGAGAGAAGAATGTCCATTTTTTGGGTCATTATCTAAAAATTTGGAAAATGTACTTGGTTTCACAAAAAATGAGATCTACCTTTTCATCCATGGTCACTTTCGTGAATACTGAAGAGTTGATAGAGATTGTGGAAAGTGCACTTCTCCATGAGCTGATCGAAAATCGAGAGTCTGATCTTGGTTTTGGTGTTGCGGAGTCTCGGTTTATGTGAAGCACTTCTGATTCGATTTGATTCCAGATAGACTGAAAATTTACTTTTATTGACTTGATACCACGTAGCTGTCAGTAAGGTTTAGAGTCAATGTTTTTTCCCATTATTTTCAAACGAGGGGAAATGAAAAAAAAAATTCCACGAAATTTCGTTCATATCCGCCCTTCGAGAAATTGAAATTGCATAAGTAATATTACGTTGGCTTCGGGAACGCAAAGTAAACAATGGAGCACCGGACAATAATACCGAAAACCTATTTTTATTTGATTTTCGGCCTTC</canonical>
            <polymorphic>TAAACTGAAATATAATTTTGAATTCTACATGTAACAAAAAGTCTCTTACGTGATAGATCATAAATTTCCTTCCAGAATTTCCGATGAAGTCACAACTGAATCGATTGGAATTTTTTAGTTGTCGTACCCAGTTGATATCGTTTTTGTACTCTTCTAAATATCAATTATTGGAATTTAAGGGACTTGTCACTAACCTGCGATATAGGTTATTTCCTTTTGTACATCGTCAAATTGAATTCTATACGCGTACATCTCTAAGAAAAATTCGGATGGCTTTAGAAACTTTGCTAACTTTTGCTCTTGATCTTTGGAACCTGAAATATTTGAAAATGCCACTTCACTAATTTTGCCACCAACCTATTTCTAGCGATTCTACGAGTTTAATCGAATTAGGTTTCACGATTTTCTCCAAACACTGATTGAATAGGGGAAGTGTTGATATTCGAGCATTTACTATGCTTATGGAACACAGCTCTTGAATCAATGAGTTGATTTGTTTYTTTCCATAGGAGAGAAGAATGTCCATTTTTTGGGTCATTATCTAAAAATTTGGAAAATGTACTTGGTTTCACAAAAAATGAGATCTACCTTTTCATCCATGGTCACTTTCGTGAATACTGAAGAGTTGATAGAGATTGTGGAAAGTGCACTTCTCCATGAGCTGATCGAAAATCGAGAGTCTGATCTTGGTTTTGGTGTTGCGGAGTCTCGGTTTATGTGAAGCACTTCTGATTCGATTTGATTCCAGATAGACTGAAAATTTACTTTTATTGACTTGATACCACGTAGCTGTCAGTAAGGTTTAGAGTCAATGTTTTTTCCCATTATTTTCAAACGAGGGGAAATGAAAAAAAAAATTCCACGAAATTTCGTTCATATCCGCCCTTCGAGAAATTGAAATTGCATAAGTAATATTACGTTGGCTTCGGGAACGCAAAGTAAACAATGGAGCACCGGACAATAATACCGAAAACCTATTTTTATTTGATTTTCGGCCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATCGAATTAGGTTTCACGAT</pcr_primer_p1>
		<pcr_primer_p2>CAACTCTTCAGTATTCACGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TAATCGAATTAGGTTTCACGATTTTCTCCAAACACTGATTGAATAGGGGAAGTGTTGATATTCGAGCATTTACTATGCTTATGGAACACAGCTCTTGAATCAATGAGTTGATTTGTTTTTTTCCATAGGAGAGAAGAATGTCCATTTTTTGGGTCATTATCTAAAAATTTGGAAAATGTACTTGGTTTCACAAAAAATGAGATCTACCTTTTCATCCATGGTCACTTTCGTGAATACTGAAGAGTTG</canonical_amplicon>
		<polymorphic_amplicon>TAATCGAATTAGGTTTCACGATTTTCTCCAAACACTGATTGAATAGGGGAAGTGTTGATATTCGAGCATTTACTATGCTTATGGAACACAGCTCTTGAATCAATGAGTTGATTTGTTTYTTTCCATAGGAGAGAAGAATGTCCATTTTTTGGGTCATTATCTAAAAATTTGGAAAATGTACTTGGTTTCACAAAAAATGAGATCTACCTTTTCATCCATGGTCACTTTCGTGAATACTGAAGAGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9079</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>298983</contig_pos>
        <strand>+</strand>
        <context>AGCCGCTTTT[C/T]CCTTTCTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAAGGCAAATGAGTTTCAACGGCGCTCTGTTTCTTATCAGCCGCTTTT</left_flank>
        <right_flank>CCTTTCTTTGCATATTCACCTTTATGACTTTTTTGGCGTTACCCTCGCCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGTTGATCTCAATTTTCCTGTAACTTTTCAACATCGCAAAGACAAAGTACATTCATCATAGTTTAAAGGTGACAAAACTATCATGTCGTTAAACAAAACAGTGCGTGTCATCAGGAGTTTCAGACATTTTTGCTCTTACGTGACATTTTCTATTTTCTCCAAAAAATGCGTTACCTGCCTAACACCAGTTTCAGCGAACAAAATATAGAATCCAAATATTGCCACCCAAATATTCCGCCATTCCGACGGCTTTGGTGTATCATCAAACACAACCGCTCGTCGTTGTCCGGGCGGCCGAGCTCGACGAACGTTCGGTCGGGCGGCTCGCTCAATAGCCATTTCTTAGGCAGAAAAGGTCTGATGAGCACGAGTACGTACCAGTTGATTCGCGGAGCAAGAGAGACAAGAAAAATGGAAAGGAAATTGCAGCCCCAAACAGAAAAAGAGAAAAGGCAAATGAGTTTCAACGGCGCTCTGTTTCTTATCAGCCGCTTTTCCCTTTCTTTGCATATTCACCTTTATGACTTTTTTGGCGTTACCCTCGCCTTCGCTTCCATCAAAAACGTGTTGAAAAGTGCTGATCAATCTCTCAACTAAAACCGTGAAATCGCAGTCTATTCATCTTATGTCGTCGTTGCCTTCTAAAAGTTTAATTGCTTTGCTCAGTGCTCACTTTTCTTTCAGTTTTCCTAAACACCTCTAAACCATCCCTATCAACCTCTCCTTATCAGTGTCTCTAGAAACAAAAAAATGAGAAGATGACTCTAGAGAATTTGTCAGAGGCTTTTTTCTGCTGAAACAGAAGGAAAGTTGCCATTTCAATTCCGAGGTAATCTGTGAGATGATATGAAAAACGAAAAGGCCACCGTACTAAAAAACGGGTAATTTTCTATTTTGGAACTTTGATAATATTATCATATTTTAGTATTAAGTAGTTTTTAAAATTTTAAAGAAAAAACGTAATACTTCATTTACCGTAAAACCTGTAACATAATGG</canonical>
            <polymorphic>TTTTGTTGATCTCAATTTTCCTGTAACTTTTCAACATCGCAAAGACAAAGTACATTCATCATAGTTTAAAGGTGACAAAACTATCATGTCGTTAAACAAAACAGTGCGTGTCATCAGGAGTTTCAGACATTTTTGCTCTTACGTGACATTTTCTATTTTCTCCAAAAAATGCGTTACCTGCCTAACACCAGTTTCAGCGAACAAAATATAGAATCCAAATATTGCCACCCAAATATTCCGCCATTCCGACGGCTTTGGTGTATCATCAAACACAACCGCTCGTCGTTGTCCGGGCGGCCGAGCTCGACGAACGTTCGGTCGGGCGGCTCGCTCAATAGCCATTTCTTAGGCAGAAAAGGTCTGATGAGCACGAGTACGTACCAGTTGATTCGCGGAGCAAGAGAGACAAGAAAAATGGAAAGGAAATTGCAGCCCCAAACAGAAAAAGAGAAAAGGCAAATGAGTTTCAACGGCGCTCTGTTTCTTATCAGCCGCTTTTYCCTTTCTTTGCATATTCACCTTTATGACTTTTTTGGCGTTACCCTCGCCTTCGCTTCCATCAAAAACGTGTTGAAAAGTGCTGATCAATCTCTCAACTAAAACCGTGAAATCGCAGTCTATTCATCTTATGTCGTCGTTGCCTTCTAAAAGTTTAATTGCTTTGCTCAGTGCTCACTTTTCTTTCAGTTTTCCTAAACACCTCTAAACCATCCCTATCAACCTCTCCTTATCAGTGTCTCTAGAAACAAAAAAATGAGAAGATGACTCTAGAGAATTTGTCAGAGGCTTTTTTCTGCTGAAACAGAAGGAAAGTTGCCATTTCAATTCCGAGGTAATCTGTGAGATGATATGAAAAACGAAAAGGCCACCGTACTAAAAAACGGGTAATTTTCTATTTTGGAACTTTGATAATATTATCATATTTTAGTATTAAGTAGTTTTTAAAATTTTAAAGAAAAAACGTAATACTTCATTTACCGTAAAACCTGTAACATAATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAGAAAAGGCAAATGAGTT</pcr_primer_p1>
		<pcr_primer_p2>TAGGAAAACTGAAAGAAAAGTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAGAAAAGGCAAATGAGTTTCAACGGCGCTCTGTTTCTTATCAGCCGCTTTTCCCTTTCTTTGCATATTCACCTTTATGACTTTTTTGGCGTTACCCTCGCCTTCGCTTCCATCAAAAACGTGTTGAAAAGTGCTGATCAATCTCTCAACTAAAACCGTGAAATCGCAGTCTATTCATCTTATGTCGTCGTTGCCTTCTAAAAGTTTAATTGCTTTGCTCAGTGCTCACTTTTCTTTCAGTTTTCCTA</canonical_amplicon>
		<polymorphic_amplicon>AAGAGAAAAGGCAAATGAGTTTCAACGGCGCTCTGTTTCTTATCAGCCGCTTTTYCCTTTCTTTGCATATTCACCTTTATGACTTTTTTGGCGTTACCCTCGCCTTCGCTTCCATCAAAAACGTGTTGAAAAGTGCTGATCAATCTCTCAACTAAAACCGTGAAATCGCAGTCTATTCATCTTATGTCGTCGTTGCCTTCTAAAAGTTTAATTGCTTTGCTCAGTGCTCACTTTTCTTTCAGTTTTCCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9080</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>299059</contig_pos>
        <strand>+</strand>
        <context>ACGTGTTGAA[A/G]AGTGCTGATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACTTTTTTGGCGTTACCCTCGCCTTCGCTTCCATCAAAAACGTGTTGAA</left_flank>
        <right_flank>AGTGCTGATCAATCTCTCAACTAAAACCGTGAAATCGCAGTCTATTCATC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACTATCATGTCGTTAAACAAAACAGTGCGTGTCATCAGGAGTTTCAGACATTTTTGCTCTTACGTGACATTTTCTATTTTCTCCAAAAAATGCGTTACCTGCCTAACACCAGTTTCAGCGAACAAAATATAGAATCCAAATATTGCCACCCAAATATTCCGCCATTCCGACGGCTTTGGTGTATCATCAAACACAACCGCTCGTCGTTGTCCGGGCGGCCGAGCTCGACGAACGTTCGGTCGGGCGGCTCGCTCAATAGCCATTTCTTAGGCAGAAAAGGTCTGATGAGCACGAGTACGTACCAGTTGATTCGCGGAGCAAGAGAGACAAGAAAAATGGAAAGGAAATTGCAGCCCCAAACAGAAAAAGAGAAAAGGCAAATGAGTTTCAACGGCGCTCTGTTTCTTATCAGCCGCTTTTCCCTTTCTTTGCATATTCACCTTTATGACTTTTTTGGCGTTACCCTCGCCTTCGCTTCCATCAAAAACGTGTTGAAAAGTGCTGATCAATCTCTCAACTAAAACCGTGAAATCGCAGTCTATTCATCTTATGTCGTCGTTGCCTTCTAAAAGTTTAATTGCTTTGCTCAGTGCTCACTTTTCTTTCAGTTTTCCTAAACACCTCTAAACCATCCCTATCAACCTCTCCTTATCAGTGTCTCTAGAAACAAAAAAATGAGAAGATGACTCTAGAGAATTTGTCAGAGGCTTTTTTCTGCTGAAACAGAAGGAAAGTTGCCATTTCAATTCCGAGGTAATCTGTGAGATGATATGAAAAACGAAAAGGCCACCGTACTAAAAAACGGGTAATTTTCTATTTTGGAACTTTGATAATATTATCATATTTTAGTATTAAGTAGTTTTTAAAATTTTAAAGAAAAAACGTAATACTTCATTTACCGTAAAACCTGTAACATAATGGGATCTAACTTTGGACTTTATGTTTATTTTTCTCGGTTCCTGCCAAAGATATAAAAAAGTTGTCAACTGTTTAATTA</canonical>
            <polymorphic>AAAACTATCATGTCGTTAAACAAAACAGTGCGTGTCATCAGGAGTTTCAGACATTTTTGCTCTTACGTGACATTTTCTATTTTCTCCAAAAAATGCGTTACCTGCCTAACACCAGTTTCAGCGAACAAAATATAGAATCCAAATATTGCCACCCAAATATTCCGCCATTCCGACGGCTTTGGTGTATCATCAAACACAACCGCTCGTCGTTGTCCGGGCGGCCGAGCTCGACGAACGTTCGGTCGGGCGGCTCGCTCAATAGCCATTTCTTAGGCAGAAAAGGTCTGATGAGCACGAGTACGTACCAGTTGATTCGCGGAGCAAGAGAGACAAGAAAAATGGAAAGGAAATTGCAGCCCCAAACAGAAAAAGAGAAAAGGCAAATGAGTTTCAACGGCGCTCTGTTTCTTATCAGCCGCTTTTCCCTTTCTTTGCATATTCACCTTTATGACTTTTTTGGCGTTACCCTCGCCTTCGCTTCCATCAAAAACGTGTTGAARAGTGCTGATCAATCTCTCAACTAAAACCGTGAAATCGCAGTCTATTCATCTTATGTCGTCGTTGCCTTCTAAAAGTTTAATTGCTTTGCTCAGTGCTCACTTTTCTTTCAGTTTTCCTAAACACCTCTAAACCATCCCTATCAACCTCTCCTTATCAGTGTCTCTAGAAACAAAAAAATGAGAAGATGACTCTAGAGAATTTGTCAGAGGCTTTTTTCTGCTGAAACAGAAGGAAAGTTGCCATTTCAATTCCGAGGTAATCTGTGAGATGATATGAAAAACGAAAAGGCCACCGTACTAAAAAACGGGTAATTTTCTATTTTGGAACTTTGATAATATTATCATATTTTAGTATTAAGTAGTTTTTAAAATTTTAAAGAAAAAACGTAATACTTCATTTACCGTAAAACCTGTAACATAATGGGATCTAACTTTGGACTTTATGTTTATTTTTCTCGGTTCCTGCCAAAGATATAAAAAAGTTGTCAACTGTTTAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTCTTTGCATATTCACCTTTA</pcr_primer_p1>
		<pcr_primer_p2>AGAGACACTGATAAGGAGAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CTTTCTTTGCATATTCACCTTTATGACTTTTTTGGCGTTACCCTCGCCTTCGCTTCCATCAAAAACGTGTTGAAAAGTGCTGATCAATCTCTCAACTAAAACCGTGAAATCGCAGTCTATTCATCTTATGTCGTCGTTGCCTTCTAAAAGTTTAATTGCTTTGCTCAGTGCTCACTTTTCTTTCAGTTTTCCTAAACACCTCTAAACCATCCCTATCAACCTCTCCTTATCAGTGTCTCT</canonical_amplicon>
		<polymorphic_amplicon>CTTTCTTTGCATATTCACCTTTATGACTTTTTTGGCGTTACCCTCGCCTTCGCTTCCATCAAAAACGTGTTGAARAGTGCTGATCAATCTCTCAACTAAAACCGTGAAATCGCAGTCTATTCATCTTATGTCGTCGTTGCCTTCTAAAAGTTTAATTGCTTTGCTCAGTGCTCACTTTTCTTTCAGTTTTCCTAAACACCTCTAAACCATCCCTATCAACCTCTCCTTATCAGTGTCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9081</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>299107</contig_pos>
        <strand>+</strand>
        <context>CAGTCTATTC[A/C]TCTTATGTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAAGTGCTGATCAATCTCTCAACTAAAACCGTGAAATCGCAGTCTATTC</left_flank>
        <right_flank>TCTTATGTCGTCGTTGCCTTCTAAAAGTTTAATTGCTTTGCTCAGTGCTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACATTTTTGCTCTTACGTGACATTTTCTATTTTCTCCAAAAAATGCGTTACCTGCCTAACACCAGTTTCAGCGAACAAAATATAGAATCCAAATATTGCCACCCAAATATTCCGCCATTCCGACGGCTTTGGTGTATCATCAAACACAACCGCTCGTCGTTGTCCGGGCGGCCGAGCTCGACGAACGTTCGGTCGGGCGGCTCGCTCAATAGCCATTTCTTAGGCAGAAAAGGTCTGATGAGCACGAGTACGTACCAGTTGATTCGCGGAGCAAGAGAGACAAGAAAAATGGAAAGGAAATTGCAGCCCCAAACAGAAAAAGAGAAAAGGCAAATGAGTTTCAACGGCGCTCTGTTTCTTATCAGCCGCTTTTCCCTTTCTTTGCATATTCACCTTTATGACTTTTTTGGCGTTACCCTCGCCTTCGCTTCCATCAAAAACGTGTTGAAAAGTGCTGATCAATCTCTCAACTAAAACCGTGAAATCGCAGTCTATTCATCTTATGTCGTCGTTGCCTTCTAAAAGTTTAATTGCTTTGCTCAGTGCTCACTTTTCTTTCAGTTTTCCTAAACACCTCTAAACCATCCCTATCAACCTCTCCTTATCAGTGTCTCTAGAAACAAAAAAATGAGAAGATGACTCTAGAGAATTTGTCAGAGGCTTTTTTCTGCTGAAACAGAAGGAAAGTTGCCATTTCAATTCCGAGGTAATCTGTGAGATGATATGAAAAACGAAAAGGCCACCGTACTAAAAAACGGGTAATTTTCTATTTTGGAACTTTGATAATATTATCATATTTTAGTATTAAGTAGTTTTTAAAATTTTAAAGAAAAAACGTAATACTTCATTTACCGTAAAACCTGTAACATAATGGGATCTAACTTTGGACTTTATGTTTATTTTTCTCGGTTCCTGCCAAAGATATAAAAAAGTTGTCAACTGTTTAATTATTTATCAAAATATTTCCATAATTTTATCAGTTGACGAACTATATATCT</canonical>
            <polymorphic>AGACATTTTTGCTCTTACGTGACATTTTCTATTTTCTCCAAAAAATGCGTTACCTGCCTAACACCAGTTTCAGCGAACAAAATATAGAATCCAAATATTGCCACCCAAATATTCCGCCATTCCGACGGCTTTGGTGTATCATCAAACACAACCGCTCGTCGTTGTCCGGGCGGCCGAGCTCGACGAACGTTCGGTCGGGCGGCTCGCTCAATAGCCATTTCTTAGGCAGAAAAGGTCTGATGAGCACGAGTACGTACCAGTTGATTCGCGGAGCAAGAGAGACAAGAAAAATGGAAAGGAAATTGCAGCCCCAAACAGAAAAAGAGAAAAGGCAAATGAGTTTCAACGGCGCTCTGTTTCTTATCAGCCGCTTTTCCCTTTCTTTGCATATTCACCTTTATGACTTTTTTGGCGTTACCCTCGCCTTCGCTTCCATCAAAAACGTGTTGAAAAGTGCTGATCAATCTCTCAACTAAAACCGTGAAATCGCAGTCTATTCMTCTTATGTCGTCGTTGCCTTCTAAAAGTTTAATTGCTTTGCTCAGTGCTCACTTTTCTTTCAGTTTTCCTAAACACCTCTAAACCATCCCTATCAACCTCTCCTTATCAGTGTCTCTAGAAACAAAAAAATGAGAAGATGACTCTAGAGAATTTGTCAGAGGCTTTTTTCTGCTGAAACAGAAGGAAAGTTGCCATTTCAATTCCGAGGTAATCTGTGAGATGATATGAAAAACGAAAAGGCCACCGTACTAAAAAACGGGTAATTTTCTATTTTGGAACTTTGATAATATTATCATATTTTAGTATTAAGTAGTTTTTAAAATTTTAAAGAAAAAACGTAATACTTCATTTACCGTAAAACCTGTAACATAATGGGATCTAACTTTGGACTTTATGTTTATTTTTCTCGGTTCCTGCCAAAGATATAAAAAAGTTGTCAACTGTTTAATTATTTATCAAAATATTTCCATAATTTTATCAGTTGACGAACTATATATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTCTTTGCATATTCACCTTTA</pcr_primer_p1>
		<pcr_primer_p2>AGAGACACTGATAAGGAGAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CTTTCTTTGCATATTCACCTTTATGACTTTTTTGGCGTTACCCTCGCCTTCGCTTCCATCAAAAACGTGTTGAAAAGTGCTGATCAATCTCTCAACTAAAACCGTGAAATCGCAGTCTATTCATCTTATGTCGTCGTTGCCTTCTAAAAGTTTAATTGCTTTGCTCAGTGCTCACTTTTCTTTCAGTTTTCCTAAACACCTCTAAACCATCCCTATCAACCTCTCCTTATCAGTGTCTCT</canonical_amplicon>
		<polymorphic_amplicon>CTTTCTTTGCATATTCACCTTTATGACTTTTTTGGCGTTACCCTCGCCTTCGCTTCCATCAAAAACGTGTTGAAAAGTGCTGATCAATCTCTCAACTAAAACCGTGAAATCGCAGTCTATTCMTCTTATGTCGTCGTTGCCTTCTAAAAGTTTAATTGCTTTGCTCAGTGCTCACTTTTCTTTCAGTTTTCCTAAACACCTCTAAACCATCCCTATCAACCTCTCCTTATCAGTGTCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9082</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>302620</contig_pos>
        <strand>+</strand>
        <context>TATTRCGATG[A/G]TCCGCTTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTGTTTCTCAGTGACTTCTGGGATGAAAAAGTCTTGATTATTGCGATG</left_flank>
        <right_flank>TCCGCTTTTCGATTGCACATGAAAAACGAGAAACGGTCAAATGTGTAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGATTAGAGCTAATTAAGTTTAAAAATGACTCGCTTCATTAATCTCATTGGATTCTCATTAGACTTTCTTTGAGTTCTTGGTGCCTCTTGAATCGGGAGTGGGTCTCCGTTGATTCTTCGCTTCTGATCCTTGATAAGGTCGATGAGAAGAATTGTGAACTGAATTGGGGTGAACTTGGCAAGTTTCTGTCTTCTTTGATTACGAGCAGCAGACATGTGTGTCGTGGACTGAAAATTTTCAAGATTTTCTGATCTATTTCGAAGCTTGAACTCACTGGCAAAAATAAGTTAGTTGGTCCTTTGGCGGTTTTAGCCCATTTAGTCATATTCCAGTTCACCTCGTTTTCTCTGCGAACGGTTTCATCAAATGCGTCCTCGCAAAGATCGAAGAATTGACCTTTCGGTAGAACTGAGATCGCCAATCTGGAGTCTTTGGTTTTGATGAGAAATTGTTTCTCAGTGACTTCTGGGATGAAAAAGTCTTGATTATTGCGATGGTCCGCTTTTCGATTGCACATGAAAAACGAGAAACGGTCAAATGTGTAGAAGAAGAAGTCGTAAATACGATTGGAGAGTTGGATCTGTAATCAGAGAGGGTTGAAGGGAAAAAAAAGGAAATCAGTTTATTAGTCAGCCCGGTTTTGACACCTACATCTCCGAACATTTCTCTCTTAAATTTCACCAGAATTTCTATGTTCGCACTTACATGATTGTAATCCTTGGCAACCATATATGGAAGTGAACCATCTTTGTTAGCAGCATTGATATCAGCTCCATACAGAAACAGAAGTTCCACTTGATTGCAATTCCCATCTCTAGCCGCGACATGCAGAGGTGTGTCGCCAGTTTCGGGGTCAAGGAAGTTGACGTCGGCTCCGAGAGCAATGAGTCTGAAATTTGAAATTGTTTTGGTTGAACCAAAACTTGAGCGAATTAGTAATAAACCAAAAAATTCGGGTGTATAATTGTTTTCGCCAATTTCACTTTTTTTGGATTGG</canonical>
            <polymorphic>TTTGATTAGAGCTAATTAAGTTTAAAAATGACTCGCTTCATTAATCTCATTGGATTCTCATTAGACTTTCTTTGAGTTCTTGGTGCCTCTTGAATCGGGAGTGGGTCTCCGTTGATTCTTCGCTTCTGATCCTTGATAAGGTCGATGAGAAGAATTGTGAACTGAATTGGGGTGAACTTGGCAAGTTTCTGTCTTCTTTGATTACGAGCAGCAGACATGTGTGTCGTGGACTGAAAATTTTCAAGATTTTCTGATCTATTTCGAAGCTTGAACTCACTGGCAAAAATAAGTTAGTTGGTCCTTTGGCGGTTTTAGCCCATTTAGTCATATTCCAGTTCACCTCGTTTTCTCTGCGAACGGTTTCATCAAATGCGTCCTCGCAAAGATCGAAGAATTGACCTTTCGGTAGAACTGAGATCGCCAATCTGGAGTCTTTGGTTTTGATGAGAAATTGTTTCTCAGTGACTTCTGGGATGAAAAAGTCTTGATTATTGCGATGRTCCGCTTTTCGATTGCACATGAAAAACGAGAAACGGTCAAATGTGTAGAAGAAGAAGTCGTAAATACGATTGGAGAGTTGGATCTGTAATCAGAGAGGGTTGAAGGGAAAAAAAAGGAAATCAGTTTATTAGTCAGCCCGGTTTTGACACCTACATCTCCGAACATTTCTCTCTTAAATTTCACCAGAATTTCTATGTTCGCACTTACATGATTGTAATCCTTGGCAACCATATATGGAAGTGAACCATCTTTGTTAGCAGCATTGATATCAGCTCCATACAGAAACAGAAGTTCCACTTGATTGCAATTCCCATCTCTAGCCGCGACATGCAGAGGTGTGTCGCCAGTTTCGGGGTCAAGGAAGTTGACGTCGGCTCCGAGAGCAATGAGTCTGAAATTTGAAATTGTTTTGGTTGAACCAAAACTTGAGCGAATTAGTAATAAACCAAAAAATTCGGGTGTATAATTGTTTTCGCCAATTTCACTTTTTTTGGATTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>501 297 202</canonical_bands>
                <polymorphic_bands>703 297</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>501 297 202</canonical_bands>
                <polymorphic_bands>703 297</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGTCATATTCCAGTTCACCTC</pcr_primer_p1>
		<pcr_primer_p2>TCGTATTTACGACTTCTTCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTAGTCATATTCCAGTTCACCTCGTTTTCTCTGCGAACGGTTTCATCAAATGCGTCCTCGCAAAGATCGAAGAATTGACCTTTCGGTAGAACTGAGATCGCCAATCTGGAGTCTTTGGTTTTGATGAGAAATTGTTTCTCAGTGACTTCTGGGATGAAAAAGTCTTGATTATTGCGATGGTCCGCTTTTCGATTGCACATGAAAAACGAGAAACGGTCAAATGTGTAGAAGAAGAAGTCGTAAATACGA</canonical_amplicon>
		<polymorphic_amplicon>TTAGTCATATTCCAGTTCACCTCGTTTTCTCTGCGAACGGTTTCATCAAATGCGTCCTCGCAAAGATCGAAGAATTGACCTTTCGGTAGAACTGAGATCGCCAATCTGGAGTCTTTGGTTTTGATGAGAAATTGTTTCTCAGTGACTTCTGGGATGAAAAAGTCTTGATTATTGCGATGRTCCGCTTTTCGATTGCACATGAAAAACGAGAAACGGTCAAATGTGTAGAAGAAGAAGTCGTAAATACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9083</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>302614</contig_pos>
        <strand>+</strand>
        <context>CTTGATTATT[A/G]CGATGRTCCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGAGAAATTGTTTCTCAGTGACTTCTGGGATGAAAAAGTCTTGATTATT</left_flank>
        <right_flank>CGATGGTCCGCTTTTCGATTGCACATGAAAAACGAGAAACGGTCAAATGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTTTTGATTAGAGCTAATTAAGTTTAAAAATGACTCGCTTCATTAATCTCATTGGATTCTCATTAGACTTTCTTTGAGTTCTTGGTGCCTCTTGAATCGGGAGTGGGTCTCCGTTGATTCTTCGCTTCTGATCCTTGATAAGGTCGATGAGAAGAATTGTGAACTGAATTGGGGTGAACTTGGCAAGTTTCTGTCTTCTTTGATTACGAGCAGCAGACATGTGTGTCGTGGACTGAAAATTTTCAAGATTTTCTGATCTATTTCGAAGCTTGAACTCACTGGCAAAAATAAGTTAGTTGGTCCTTTGGCGGTTTTAGCCCATTTAGTCATATTCCAGTTCACCTCGTTTTCTCTGCGAACGGTTTCATCAAATGCGTCCTCGCAAAGATCGAAGAATTGACCTTTCGGTAGAACTGAGATCGCCAATCTGGAGTCTTTGGTTTTGATGAGAAATTGTTTCTCAGTGACTTCTGGGATGAAAAAGTCTTGATTATTGCGATGGTCCGCTTTTCGATTGCACATGAAAAACGAGAAACGGTCAAATGTGTAGAAGAAGAAGTCGTAAATACGATTGGAGAGTTGGATCTGTAATCAGAGAGGGTTGAAGGGAAAAAAAAGGAAATCAGTTTATTAGTCAGCCCGGTTTTGACACCTACATCTCCGAACATTTCTCTCTTAAATTTCACCAGAATTTCTATGTTCGCACTTACATGATTGTAATCCTTGGCAACCATATATGGAAGTGAACCATCTTTGTTAGCAGCATTGATATCAGCTCCATACAGAAACAGAAGTTCCACTTGATTGCAATTCCCATCTCTAGCCGCGACATGCAGAGGTGTGTCGCCAGTTTCGGGGTCAAGGAAGTTGACGTCGGCTCCGAGAGCAATGAGTCTGAAATTTGAAATTGTTTTGGTTGAACCAAAACTTGAGCGAATTAGTAATAAACCAAAAAATTCGGGTGTATAATTGTTTTCGCCAATTTCACTTTTTTTG</canonical>
            <polymorphic>AATTTTTTTGATTAGAGCTAATTAAGTTTAAAAATGACTCGCTTCATTAATCTCATTGGATTCTCATTAGACTTTCTTTGAGTTCTTGGTGCCTCTTGAATCGGGAGTGGGTCTCCGTTGATTCTTCGCTTCTGATCCTTGATAAGGTCGATGAGAAGAATTGTGAACTGAATTGGGGTGAACTTGGCAAGTTTCTGTCTTCTTTGATTACGAGCAGCAGACATGTGTGTCGTGGACTGAAAATTTTCAAGATTTTCTGATCTATTTCGAAGCTTGAACTCACTGGCAAAAATAAGTTAGTTGGTCCTTTGGCGGTTTTAGCCCATTTAGTCATATTCCAGTTCACCTCGTTTTCTCTGCGAACGGTTTCATCAAATGCGTCCTCGCAAAGATCGAAGAATTGACCTTTCGGTAGAACTGAGATCGCCAATCTGGAGTCTTTGGTTTTGATGAGAAATTGTTTCTCAGTGACTTCTGGGATGAAAAAGTCTTGATTATTRCGATGGTCCGCTTTTCGATTGCACATGAAAAACGAGAAACGGTCAAATGTGTAGAAGAAGAAGTCGTAAATACGATTGGAGAGTTGGATCTGTAATCAGAGAGGGTTGAAGGGAAAAAAAAGGAAATCAGTTTATTAGTCAGCCCGGTTTTGACACCTACATCTCCGAACATTTCTCTCTTAAATTTCACCAGAATTTCTATGTTCGCACTTACATGATTGTAATCCTTGGCAACCATATATGGAAGTGAACCATCTTTGTTAGCAGCATTGATATCAGCTCCATACAGAAACAGAAGTTCCACTTGATTGCAATTCCCATCTCTAGCCGCGACATGCAGAGGTGTGTCGCCAGTTTCGGGGTCAAGGAAGTTGACGTCGGCTCCGAGAGCAATGAGTCTGAAATTTGAAATTGTTTTGGTTGAACCAAAACTTGAGCGAATTAGTAATAAACCAAAAAATTCGGGTGTATAATTGTTTTCGCCAATTTCACTTTTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGTCATATTCCAGTTCACCTC</pcr_primer_p1>
		<pcr_primer_p2>TCGTATTTACGACTTCTTCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTAGTCATATTCCAGTTCACCTCGTTTTCTCTGCGAACGGTTTCATCAAATGCGTCCTCGCAAAGATCGAAGAATTGACCTTTCGGTAGAACTGAGATCGCCAATCTGGAGTCTTTGGTTTTGATGAGAAATTGTTTCTCAGTGACTTCTGGGATGAAAAAGTCTTGATTATTGCGATGGTCCGCTTTTCGATTGCACATGAAAAACGAGAAACGGTCAAATGTGTAGAAGAAGAAGTCGTAAATACGA</canonical_amplicon>
		<polymorphic_amplicon>TTAGTCATATTCCAGTTCACCTCGTTTTCTCTGCGAACGGTTTCATCAAATGCGTCCTCGCAAAGATCGAAGAATTGACCTTTCGGTAGAACTGAGATCGCCAATCTGGAGTCTTTGGTTTTGATGAGAAATTGTTTCTCAGTGACTTCTGGGATGAAAAAGTCTTGATTATTRCGATGGTCCGCTTTTCGATTGCACATGAAAAACGAGAAACGGTCAAATGTGTAGAAGAAGAAGTCGTAAATACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9084</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>302509</contig_pos>
        <strand>+</strand>
        <context>CGCAAAGATC[A/G]AAGAATTGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCTCGTTTTCTCTGCGAACGGTTTCATCAAATGCGTCCTCGCAAAGATC</left_flank>
        <right_flank>AAGAATTGACCTTTCGGTAGAACTGAGATCGCCAATCTGGAGTCTTTGGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAATTCATCGACAGTGTTTGATTGAGAGTTTGGTAAGATGCCAGAAGTTGGAGAGCACGAGATTCCAGCCACCTCGTCGTAGTCGGCATATTCATTTCTTCTGGAATTTTTTTGATTAGAGCTAATTAAGTTTAAAAATGACTCGCTTCATTAATCTCATTGGATTCTCATTAGACTTTCTTTGAGTTCTTGGTGCCTCTTGAATCGGGAGTGGGTCTCCGTTGATTCTTCGCTTCTGATCCTTGATAAGGTCGATGAGAAGAATTGTGAACTGAATTGGGGTGAACTTGGCAAGTTTCTGTCTTCTTTGATTACGAGCAGCAGACATGTGTGTCGTGGACTGAAAATTTTCAAGATTTTCTGATCTATTTCGAAGCTTGAACTCACTGGCAAAAATAAGTTAGTTGGTCCTTTGGCGGTTTTAGCCCATTTAGTCATATTCCAGTTCACCTCGTTTTCTCTGCGAACGGTTTCATCAAATGCGTCCTCGCAAAGATCGAAGAATTGACCTTTCGGTAGAACTGAGATCGCCAATCTGGAGTCTTTGGTTTTGATGAGAAATTGTTTCTCAGTGACTTCTGGGATGAAAAAGTCTTGATTATTGCGATGGTCCGCTTTTCGATTGCACATGAAAAACGAGAAACGGTCAAATGTGTAGAAGAAGAAGTCGTAAATACGATTGGAGAGTTGGATCTGTAATCAGAGAGGGTTGAAGGGAAAAAAAAGGAAATCAGTTTATTAGTCAGCCCGGTTTTGACACCTACATCTCCGAACATTTCTCTCTTAAATTTCACCAGAATTTCTATGTTCGCACTTACATGATTGTAATCCTTGGCAACCATATATGGAAGTGAACCATCTTTGTTAGCAGCATTGATATCAGCTCCATACAGAAACAGAAGTTCCACTTGATTGCAATTCCCATCTCTAGCCGCGACATGCAGAGGTGTGTCGCCAGTTTCGGGGTCAAGGAAGTTGACGTCGGCTCCGAGAGCAATG</canonical>
            <polymorphic>TTAATTCATCGACAGTGTTTGATTGAGAGTTTGGTAAGATGCCAGAAGTTGGAGAGCACGAGATTCCAGCCACCTCGTCGTAGTCGGCATATTCATTTCTTCTGGAATTTTTTTGATTAGAGCTAATTAAGTTTAAAAATGACTCGCTTCATTAATCTCATTGGATTCTCATTAGACTTTCTTTGAGTTCTTGGTGCCTCTTGAATCGGGAGTGGGTCTCCGTTGATTCTTCGCTTCTGATCCTTGATAAGGTCGATGAGAAGAATTGTGAACTGAATTGGGGTGAACTTGGCAAGTTTCTGTCTTCTTTGATTACGAGCAGCAGACATGTGTGTCGTGGACTGAAAATTTTCAAGATTTTCTGATCTATTTCGAAGCTTGAACTCACTGGCAAAAATAAGTTAGTTGGTCCTTTGGCGGTTTTAGCCCATTTAGTCATATTCCAGTTCACCTCGTTTTCTCTGCGAACGGTTTCATCAAATGCGTCCTCGCAAAGATCRAAGAATTGACCTTTCGGTAGAACTGAGATCGCCAATCTGGAGTCTTTGGTTTTGATGAGAAATTGTTTCTCAGTGACTTCTGGGATGAAAAAGTCTTGATTATTGCGATGGTCCGCTTTTCGATTGCACATGAAAAACGAGAAACGGTCAAATGTGTAGAAGAAGAAGTCGTAAATACGATTGGAGAGTTGGATCTGTAATCAGAGAGGGTTGAAGGGAAAAAAAAGGAAATCAGTTTATTAGTCAGCCCGGTTTTGACACCTACATCTCCGAACATTTCTCTCTTAAATTTCACCAGAATTTCTATGTTCGCACTTACATGATTGTAATCCTTGGCAACCATATATGGAAGTGAACCATCTTTGTTAGCAGCATTGATATCAGCTCCATACAGAAACAGAAGTTCCACTTGATTGCAATTCCCATCTCTAGCCGCGACATGCAGAGGTGTGTCGCCAGTTTCGGGGTCAAGGAAGTTGACGTCGGCTCCGAGAGCAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>379 244 126 122 119 10</canonical_bands>
                <polymorphic_bands>379 248 244 119 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGTCATATTCCAGTTCACCTC</pcr_primer_p1>
		<pcr_primer_p2>TCGTATTTACGACTTCTTCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTAGTCATATTCCAGTTCACCTCGTTTTCTCTGCGAACGGTTTCATCAAATGCGTCCTCGCAAAGATCGAAGAATTGACCTTTCGGTAGAACTGAGATCGCCAATCTGGAGTCTTTGGTTTTGATGAGAAATTGTTTCTCAGTGACTTCTGGGATGAAAAAGTCTTGATTATTGCGATGGTCCGCTTTTCGATTGCACATGAAAAACGAGAAACGGTCAAATGTGTAGAAGAAGAAGTCGTAAATACGA</canonical_amplicon>
		<polymorphic_amplicon>TTAGTCATATTCCAGTTCACCTCGTTTTCTCTGCGAACGGTTTCATCAAATGCGTCCTCGCAAAGATCRAAGAATTGACCTTTCGGTAGAACTGAGATCGCCAATCTGGAGTCTTTGGTTTTGATGAGAAATTGTTTCTCAGTGACTTCTGGGATGAAAAAGTCTTGATTATTGCGATGGTCCGCTTTTCGATTGCACATGAAAAACGAGAAACGGTCAAATGTGTAGAAGAAGAAGTCGTAAATACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9085</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>302143</contig_pos>
        <strand></strand>
        <context>TAATTAAGTT[T/A]AAAAATGACT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCGGCATATTCATTTCTTCTGGAATTTTTTTGATTAGAGCTAATTAAGTT</left_flank>
        <right_flank>AAAAATGACTCGCTTCATTAATCTCATTGGATTCTCATTAGACTTTCTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATCTTTTTCGATTTGTATTTATAATCAAACCTCACCTGCGAGAGAAGCTGTGCTGAATTCCAGCCGGTGGCAAAATCCTCTCCGGCGTTTCCACAATTGCAAGCGGCGATGGCATGCGCCTTGTCATGTTAGTCCTTTTTAGGTTGTACAAATCATCTCGGAACGAAATAAGTTCCGAGTTGAGGTTGATGTTCTGGGCTTGAAGACTGTGGACCAATCTGCAACTTAAAAAGTTGATCAGGAGTTTTTTTTATTTCTTTTCACTTAGTGAGCTCCTCGTTCTGTTTGGTAACCGTGAGCACCATACTCTCAGCGTTCAGAAGTCTCTCTTTCATCTCCAACACCTCATCCCATATTCTCCCATTTAATTCATCGACAGTGTTTGATTGAGAGTTTGGTAAGATGCCAGAAGTTGGAGAGCACGAGATTCCAGCCACCTCGTCGTAGTCGGCATATTCATTTCTTCTGGAATTTTTTTGATTAGAGCTAATTAAGTTTAAAAATGACTCGCTTCATTAATCTCATTGGATTCTCATTAGACTTTCTTTGAGTTCTTGGTGCCTCTTGAATCGGGAGTGGGTCTCCGTTGATTCTTCGCTTCTGATCCTTGATAAGGTCGATGAGAAGAATTGTGAACTGAATTGGGGTGAACTTGGCAAGTTTCTGTCTTCTTTGATTACGAGCAGCAGACATGTGTGTCGTGGACTGAAAATTTTCAAGATTTTCTGATCTATTTCGAAGCTTGAACTCACTGGCAAAAATAAGTTAGTTGGTCCTTTGGCGGTTTTAGCCCATTTAGTCATATTCCAGTTCACCTCGTTTTCTCTGCGAACGGTTTCATCAAATGCGTCCTCGCAAAGATCGAAGAATTGACCTTTCGGTAGAACTGAGATCGCCAATCTGGAGTCTTTGGTTTTGATGAGAAATTGTTTCTCAGTGACTTCTGGGATGAAAAAGTCTTGATTATTGCGATGGTCCGCTTTTCGATTGCACATGAA</canonical>
            <polymorphic>ATATCTTTTTCGATTTGTATTTATAATCAAACCTCACCTGCGAGAGAAGCTGTGCTGAATTCCAGCCGGTGGCAAAATCCTCTCCGGCGTTTCCACAATTGCAAGCGGCGATGGCATGCGCCTTGTCATGTTAGTCCTTTTTAGGTTGTACAAATCATCTCGGAACGAAATAAGTTCCGAGTTGAGGTTGATGTTCTGGGCTTGAAGACTGTGGACCAATCTGCAACTTAAAAAGTTGATCAGGAGTTTTTTTTATTTCTTTTCACTTAGTGAGCTCCTCGTTCTGTTTGGTAACCGTGAGCACCATACTCTCAGCGTTCAGAAGTCTCTCTTTCATCTCCAACACCTCATCCCATATTCTCCCATTTAATTCATCGACAGTGTTTGATTGAGAGTTTGGTAAGATGCCAGAAGTTGGAGAGCACGAGATTCCAGCCACCTCGTCGTAGTCGGCATATTCATTTCTTCTGGAATTTTTTTGATTAGAGCTAATTAAGTTWAAAAATGACTCGCTTCATTAATCTCATTGGATTCTCATTAGACTTTCTTTGAGTTCTTGGTGCCTCTTGAATCGGGAGTGGGTCTCCGTTGATTCTTCGCTTCTGATCCTTGATAAGGTCGATGAGAAGAATTGTGAACTGAATTGGGGTGAACTTGGCAAGTTTCTGTCTTCTTTGATTACGAGCAGCAGACATGTGTGTCGTGGACTGAAAATTTTCAAGATTTTCTGATCTATTTCGAAGCTTGAACTCACTGGCAAAAATAAGTTAGTTGGTCCTTTGGCGGTTTTAGCCCATTTAGTCATATTCCAGTTCACCTCGTTTTCTCTGCGAACGGTTTCATCAAATGCGTCCTCGCAAAGATCGAAGAATTGACCTTTCGGTAGAACTGAGATCGCCAATCTGGAGTCTTTGGTTTTGATGAGAAATTGTTTCTCAGTGACTTCTGGGATGAAAAAGTCTTGATTATTGCGATGGTCCGCTTTTCGATTGCACATGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>482 228 139 126 19 6</canonical_bands>
                <polymorphic_bands>482 228 139 126 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGATTGAGAGTTTGGTAAGATG</pcr_primer_p1>
		<pcr_primer_p2>CAATTCTTCTCATCGACCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGATTGAGAGTTTGGTAAGATGCCAGAAGTTGGAGAGCACGAGATTCCAGCCACCTCGTCGTAGTCGGCATATTCATTTCTTCTGGAATTTTTTTGATTAGAGCTAATTAAGTTTAAAAATGACTCGCTTCATTAATCTCATTGGATTCTCATTAGACTTTCTTTGAGTTCTTGGTGCCTCTTGAATCGGGAGTGGGTCTCCGTTGATTCTTCGCTTCTGATCCTTGATAAGGTCGATGAGAAGAATTG</canonical_amplicon>
		<polymorphic_amplicon>TTGATTGAGAGTTTGGTAAGATGCCAGAAGTTGGAGAGCACGAGATTCCAGCCACCTCGTCGTAGTCGGCATATTCATTTCTTCTGGAATTTTTTTGATTAGAGCTAATTAAGTTWAAAAATGACTCGCTTCATTAATCTCATTGGATTCTCATTAGACTTTCTTTGAGTTCTTGGTGCCTCTTGAATCGGGAGTGGGTCTCCGTTGATTCTTCGCTTCTGATCCTTGATAAGGTCGATGAGAAGAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9086</snp_id>
        <super_contig>c004900897.Contig1</super_contig>
        <contig_pos>5533</contig_pos>
        <strand>+</strand>
        <context>CCAGACCATC[C/G]GATTCTCGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGCATATCTGATGTGGCATGAGTGGATAGAGTGATTGGTTCCAGACCATC</left_flank>
        <right_flank>GATTCTCGGAATCTGGAAATCTGGAGTTACAGACACACAGATGGGAAATT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATTATCATATCTCCATCCATTATAAAATGTATGTCAGATTTGGCTCCCCATCTTGCGACATTTCTCATCAAACTACACGGATACAGTACGAATGGAGCTGATATTTCAGCGCGCAGTGTTTCTTCTGCAATTTTTTATTATTTTGGGATTTCAAAAATCGAATTACGGTTTTTCAAAAAGTAATCACATGAAATTTTGGATTTTGGAATAAAAACTGTTGGACAATCAGTTTGAAAAGCAGATATTCGATAGGCAAAATGAATGGACATCTGGAAATGTCGATTTACAGATGGACAATTAAAAATATTGCACACCTTCCGTCCGAATTCCGGTACACATTTATATAAATTTTCCAAATATTCCAGAGCATTTGAAGTTTGAATATCTAAAAATATTCCAACTGAAATTGGTCCATCCCATAGATTTGGCATATTTTCTAAAGTTTTCAGCATATCTGATGTGGCATGAGTGGATAGAGTGATTGGTTCCAGACCATCCGATTCTCGGAATCTGGAAATCTGGAGTTACAGACACACAGATGGGAAATTTCTGAATTTTTAGATTCTTAAACGTTTTAGGTGTCCGAATTGTTTTTGATATTCGGAATTTCTGAATTTTCAAATTTCCCAAAACTTACGAATCTTTGGCTTCCACGAAATTCAATCCAATACAATATTGCTCATCATATAAATTTGTCGGGATTACTGTATATTCTCGGAATATTTGAAATAGCGACGACGTCGAGTTTTCAGGATTCTGAATTGTGAAATTTTCGTGATTGTGAGGTTTTTGATAGTTTTCAGAAAGATTTGGATTCTGAAATATTTTCCATTCCTTTCAAAAATCTGAAAATTTCAAAACTCACCGCCAAAATTAAGAACAAAACTAGAAAAAATATGACAAAAATTATAAAAATCTGATGGGATAATCGAAATTGTCTGGTCATTTTGAATCCGAAGAAAGATTTTCGAATTCATTTATATACAATTTTTTTCTGA</canonical>
            <polymorphic>TAATTATCATATCTCCATCCATTATAAAATGTATGTCAGATTTGGCTCCCCATCTTGCGACATTTCTCATCAAACTACACGGATACAGTACGAATGGAGCTGATATTTCAGCGCGCAGTGTTTCTTCTGCAATTTTTTATTATTTTGGGATTTCAAAAATCGAATTACGGTTTTTCAAAAAGTAATCACATGAAATTTTGGATTTTGGAATAAAAACTGTTGGACAATCAGTTTGAAAAGCAGATATTCGATAGGCAAAATGAATGGACATCTGGAAATGTCGATTTACAGATGGACAATTAAAAATATTGCACACCTTCCGTCCGAATTCCGGTACACATTTATATAAATTTTCCAAATATTCCAGAGCATTTGAAGTTTGAATATCTAAAAATATTCCAACTGAAATTGGTCCATCCCATAGATTTGGCATATTTTCTAAAGTTTTCAGCATATCTGATGTGGCATGAGTGGATAGAGTGATTGGTTCCAGACCATCSGATTCTCGGAATCTGGAAATCTGGAGTTACAGACACACAGATGGGAAATTTCTGAATTTTTAGATTCTTAAACGTTTTAGGTGTCCGAATTGTTTTTGATATTCGGAATTTCTGAATTTTCAAATTTCCCAAAACTTACGAATCTTTGGCTTCCACGAAATTCAATCCAATACAATATTGCTCATCATATAAATTTGTCGGGATTACTGTATATTCTCGGAATATTTGAAATAGCGACGACGTCGAGTTTTCAGGATTCTGAATTGTGAAATTTTCGTGATTGTGAGGTTTTTGATAGTTTTCAGAAAGATTTGGATTCTGAAATATTTTCCATTCCTTTCAAAAATCTGAAAATTTCAAAACTCACCGCCAAAATTAAGAACAAAACTAGAAAAAATATGACAAAAATTATAAAAATCTGATGGGATAATCGAAATTGTCTGGTCATTTTGAATCCGAAGAAAGATTTTCGAATTCATTTATATACAATTTTTTTCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>495 330 175</canonical_bands>
                <polymorphic_bands>670 330</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATTCCAGAGCATTTGAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCCGAATATCAAAAACAATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATTCCAGAGCATTTGAAGTTTGAATATCTAAAAATATTCCAACTGAAATTGGTCCATCCCATAGATTTGGCATATTTTCTAAAGTTTTCAGCATATCTGATGTGGCATGAGTGGATAGAGTGATTGGTTCCAGACCATCCGATTCTCGGAATCTGGAAATCTGGAGTTACAGACACACAGATGGGAAATTTCTGAATTTTTAGATTCTTAAACGTTTTAGGTGTCCGAATTGTTTTTGATATTCGGAA</canonical_amplicon>
		<polymorphic_amplicon>ATATTCCAGAGCATTTGAAGTTTGAATATCTAAAAATATTCCAACTGAAATTGGTCCATCCCATAGATTTGGCATATTTTCTAAAGTTTTCAGCATATCTGATGTGGCATGAGTGGATAGAGTGATTGGTTCCAGACCATCSGATTCTCGGAATCTGGAAATCTGGAGTTACAGACACACAGATGGGAAATTTCTGAATTTTTAGATTCTTAAACGTTTTAGGTGTCCGAATTGTTTTTGATATTCGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9087</snp_id>
        <super_contig>c004900897.Contig1</super_contig>
        <contig_pos>6574</contig_pos>
        <strand>+</strand>
        <context>TCTTGAATTT[G/T]TCACGGGCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATTTTTTCAGTGTCCATGGGTAAACCTCTCCCATTTCCTTCTTGAATTT</left_flank>
        <right_flank>TCACGGGCTCTGAAAATCCAACAAATGGAACTTTAGTGATATCAGTCAGT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTCAATTCGGTAGACTTCATTTCGGAAATTTTGATTTTTCTTTTTTTCTTGGATAATTTCCGTAGATCAGATAACAAATTTCCATTGCAGGGGAAACGAGAATTGGTAATCAAAAAAATTCATAAAATCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCAGAGATTCAGAGATTCTGAGATTCTGAGATTCTAAGATTCTCAGATTCTGAGATTCTGAGATTATGAGATTCTGAGATTCTGAATTTGTAGCTCAAATTCAGAAAAATATTTATTTTCAAAAACTTGAGATCTAAAATCTATAAAAAGTTAAAAAAAATTCAAAAATTCAGAATCCTAAGCAAATGAAAATTCTCCACATTTTTTCAGTGTCCATGGGTAAACCTCTCCCATTTCCTTCTTGAATTTGTCACGGGCTCTGAAAATCCAACAAATGGAACTTTAGTGATATCAGTCAGTTTTTTTTTTTCAAACTGATGACTCTGGTGTGCCTTCGATGCGATTCTACCCAACTTCTTTCTCCTTCAAAGGAAAATACCGTATTCCCTCTAACAGAATTCAAATCGAGCTCAATTATCTCGATTCCTGTGAAAGATATCAAAAACTTGTCAACTGATAAATTTTTTATCATAACATCACCAATATTTGATGAGTTGACAAAATCTTGATATCTGTCATAAGAATTGAGACAATTGAGCTCATAGTTAACGGTTTCGGTGGGCATCTGTTAGAGAAAATACTGTAAGTAAATAATTGTTTGTAATAATTGTTAGTAATTGTAAGTAGTTGTTTCTCAATTATGAAAAATTCCTCACAAAATCATCGCTGCAGCTTCTTGATGAGTGATTGAAGCCTTTGAGTATACTGTATTTGTATGTTTTATCCCATTATGAATACTGAATACGTGGC</canonical>
            <polymorphic>TTTTTCAATTCGGTAGACTTCATTTCGGAAATTTTGATTTTTCTTTTTTTCTTGGATAATTTCCGTAGATCAGATAACAAATTTCCATTGCAGGGGAAACGAGAATTGGTAATCAAAAAAATTCATAAAATCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCAGAGATTCAGAGATTCTGAGATTCTGAGATTCTAAGATTCTCAGATTCTGAGATTCTGAGATTATGAGATTCTGAGATTCTGAATTTGTAGCTCAAATTCAGAAAAATATTTATTTTCAAAAACTTGAGATCTAAAATCTATAAAAAGTTAAAAAAAATTCAAAAATTCAGAATCCTAAGCAAATGAAAATTCTCCACATTTTTTCAGTGTCCATGGGTAAACCTCTCCCATTTCCTTCTTGAATTTKTCACGGGCTCTGAAAATCCAACAAATGGAACTTTAGTGATATCAGTCAGTTTTTTTTTTTCAAACTGATGACTCTGGTGTGCCTTCGATGCGATTCTACCCAACTTCTTTCTCCTTCAAAGGAAAATACCGTATTCCCTCTAACAGAATTCAAATCGAGCTCAATTATCTCGATTCCTGTGAAAGATATCAAAAACTTGTCAACTGATAAATTTTTTATCATAACATCACCAATATTTGATGAGTTGACAAAATCTTGATATCTGTCATAAGAATTGAGACAATTGAGCTCATAGTTAACGGTTTCGGTGGGCATCTGTTAGAGAAAATACTGTAAGTAAATAATTGTTTGTAATAATTGTTAGTAATTGTAAGTAGTTGTTTCTCAATTATGAAAAATTCCTCACAAAATCATCGCTGCAGCTTCTTGATGAGTGATTGAAGCCTTTGAGTATACTGTATTTGTATGTTTTATCCCATTATGAATACTGAATACGTGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAGAATCCTAAGCAAATGA</pcr_primer_p1>
		<pcr_primer_p2>TTCCTTTGAAGGAGAAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>206</pcr_amplicon_size>
		<canonical_amplicon>TTCAGAATCCTAAGCAAATGAAAATTCTCCACATTTTTTCAGTGTCCATGGGTAAACCTCTCCCATTTCCTTCTTGAATTTGTCACGGGCTCTGAAAATCCAACAAATGGAACTTTAGTGATATCAGTCAGTTTTTTTTTTTCAAACTGATGACTCTGGTGTGCCTTCGATGCGATTCTACCCAACTTCTTTCTCCTTCAAAGGAA</canonical_amplicon>
		<polymorphic_amplicon>TTCAGAATCCTAAGCAAATGAAAATTCTCCACATTTTTTCAGTGTCCATGGGTAAACCTCTCCCATTTCCTTCTTGAATTTKTCACGGGCTCTGAAAATCCAACAAATGGAACTTTAGTGATATCAGTCAGTTTTTTTTTTTCAAACTGATGACTCTGGTGTGCCTTCGATGCGATTCTACCCAACTTCTTTCTCCTTCAAAGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9088</snp_id>
        <super_contig>c004900897.Contig1</super_contig>
        <contig_pos>8997</contig_pos>
        <strand>+</strand>
        <context>TTATGGCGAA[A/G]TTTTGACTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTTTCCATCGATTATTCGATTTGCGATTTCTTTGATTTTTATGGCGAA</left_flank>
        <right_flank>TTTTGACTTGGTATCATATCTCCATCCATTAGAATATGTAAACCTGATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATATAGCCTTTCAGATTTTCAGATTGTTCTTATCACTTACGGATAAGGAACCAAACTTGCTGTAACCATATCAGTCTCCTCGCATTTTTTGAACCATTCATCCAATCCTTCAATTGAATATCCAGCCGTAAAGTAGCGGTGATGGAATTCGAATGTTCTAAAAAAAATAATTTTTGTGATTTTTGTGCCCAAAAAATTGGAAATTTTGAAATTTGGTTTTAGATGAAATTCGGATTTTTTTTTCTGAAAATTCAAATTTATTAAAAGCTTTTCGAGTAATTTTTTTTCGAAATTCTTAGGCCTTTATATTCTTTTATGACTCATTTTGGATTCTTTATTCTTAATTCCCAACCTTTGCAGTATTTTGGAATCCAATAATTTCTTATTATCAGTTAAGATATCCATTCCAGATTCCGTTTCAAATCTCCGAATCGCCAAAACTTTTTTATGTTTTCCATCGATTATTCGATTTGCGATTTCTTTGATTTTTATGGCGAAATTTTGACTTGGTATCATATCTCCATCCATTAGAATATGTAAACCTGATTTTGATCCTTTTCTTGCGATATTTCTCATCAAATTATGCGGAAAATTCTGGAATGGACCAACGATGGCGGTTCGAAGAGCGTTTTCTGCAAGAAATGGATTACTGTAGTTCGAACATTTGATGTACTGTAGCTTCGAATGAGAAAGTTAGGTATAGTGTAGCTTAGCTTTTTGGTATAGTGTACTTCTTTAGCTGTTTGGTATATCGTTGCTTACTGGTATACTGCAGCTTGGAATTGAAAAAATTGGTATACTGTAGCTTACGGGTATACTGTAGCTTATTGTTATATTGTAGGTCATTGGTATACTGTAGCCTGGTACGAAAAAAATAGGTGTACTGTAGCTTACTGGTATACTGTAGCTTACTGGTATACTGTAGTTTACTCGTATACTGTAGCTCATTGATATACTTTAGTTCAAATTTGGCATACTGTAGCTTGTTGACATACTTCA</canonical>
            <polymorphic>TATATAGCCTTTCAGATTTTCAGATTGTTCTTATCACTTACGGATAAGGAACCAAACTTGCTGTAACCATATCAGTCTCCTCGCATTTTTTGAACCATTCATCCAATCCTTCAATTGAATATCCAGCCGTAAAGTAGCGGTGATGGAATTCGAATGTTCTAAAAAAAATAATTTTTGTGATTTTTGTGCCCAAAAAATTGGAAATTTTGAAATTTGGTTTTAGATGAAATTCGGATTTTTTTTTCTGAAAATTCAAATTTATTAAAAGCTTTTCGAGTAATTTTTTTTCGAAATTCTTAGGCCTTTATATTCTTTTATGACTCATTTTGGATTCTTTATTCTTAATTCCCAACCTTTGCAGTATTTTGGAATCCAATAATTTCTTATTATCAGTTAAGATATCCATTCCAGATTCCGTTTCAAATCTCCGAATCGCCAAAACTTTTTTATGTTTTCCATCGATTATTCGATTTGCGATTTCTTTGATTTTTATGGCGAARTTTTGACTTGGTATCATATCTCCATCCATTAGAATATGTAAACCTGATTTTGATCCTTTTCTTGCGATATTTCTCATCAAATTATGCGGAAAATTCTGGAATGGACCAACGATGGCGGTTCGAAGAGCGTTTTCTGCAAGAAATGGATTACTGTAGTTCGAACATTTGATGTACTGTAGCTTCGAATGAGAAAGTTAGGTATAGTGTAGCTTAGCTTTTTGGTATAGTGTACTTCTTTAGCTGTTTGGTATATCGTTGCTTACTGGTATACTGCAGCTTGGAATTGAAAAAATTGGTATACTGTAGCTTACGGGTATACTGTAGCTTATTGTTATATTGTAGGTCATTGGTATACTGTAGCCTGGTACGAAAAAAATAGGTGTACTGTAGCTTACTGGTATACTGTAGCTTACTGGTATACTGTAGTTTACTCGTATACTGTAGCTCATTGATATACTTTAGTTCAAATTTGGCATACTGTAGCTTGTTGACATACTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>375 207 146 93 56 36 34 22 17 8 6</canonical_bands>
                <polymorphic_bands>375 300 146 56 36 34 22 17 8 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>190 176 121 112 81 52 34 34 34 26 23 23 22 17 13 12 9 8 7 6</canonical_bands>
                <polymorphic_bands>202 190 176 112 52 34 34 34 26 23 23 22 17 13 12 9 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTATGTTTTCCATCGATTAT</pcr_primer_p1>
		<pcr_primer_p2>TCTCATTCGAAGCTACAGTACAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTTTATGTTTTCCATCGATTATTCGATTTGCGATTTCTTTGATTTTTATGGCGAAATTTTGACTTGGTATCATATCTCCATCCATTAGAATATGTAAACCTGATTTTGATCCTTTTCTTGCGATATTTCTCATCAAATTATGCGGAAAATTCTGGAATGGACCAACGATGGCGGTTCGAAGAGCGTTTTCTGCAAGAAATGGATTACTGTAGTTCGAACATTTGATGTACTGTAGCTTCGAATGAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTATGTTTTCCATCGATTATTCGATTTGCGATTTCTTTGATTTTTATGGCGAARTTTTGACTTGGTATCATATCTCCATCCATTAGAATATGTAAACCTGATTTTGATCCTTTTCTTGCGATATTTCTCATCAAATTATGCGGAAAATTCTGGAATGGACCAACGATGGCGGTTCGAAGAGCGTTTTCTGCAAGAAATGGATTACTGTAGTTCGAACATTTGATGTACTGTAGCTTCGAATGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9089</snp_id>
        <super_contig>c004900897.Contig1</super_contig>
        <contig_pos>8894</contig_pos>
        <strand>+</strand>
        <context>TTATCAGTTR[A/G]GATATCCATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCCAACCTTTGCAGTATTTTGGAATCCAATAATTTCTTATTATCAGTTA</left_flank>
        <right_flank>GATATCCATTCCAGATTCCGTTTCAAATCTCCGAATCGCCAAAACTTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACATCGAGAATTCGAGATTTTCAATAAGTTTCTTAGAATTCGGCCTCATTCGATCGGCTGTCTGCGATTTTCGACCGACCGAAATGGAAGCTATTTTTTTTTATATAGCCTTTCAGATTTTCAGATTGTTCTTATCACTTACGGATAAGGAACCAAACTTGCTGTAACCATATCAGTCTCCTCGCATTTTTTGAACCATTCATCCAATCCTTCAATTGAATATCCAGCCGTAAAGTAGCGGTGATGGAATTCGAATGTTCTAAAAAAAATAATTTTTGTGATTTTTGTGCCCAAAAAATTGGAAATTTTGAAATTTGGTTTTAGATGAAATTCGGATTTTTTTTTCTGAAAATTCAAATTTATTAAAAGCTTTTCGAGTAATTTTTTTTCGAAATTCTTAGGCCTTTATATTCTTTTATGACTCATTTTGGATTCTTTATTCTTAATTCCCAACCTTTGCAGTATTTTGGAATCCAATAATTTCTTATTATCAGTTAAGATATCCATTCCAGATTCCGTTTCAAATCTCCGAATCGCCAAAACTTTTTTATGTTTTCCATCGATTATTCGATTTGCGATTTCTTTGATTTTTATGGCGAAATTTTGACTTGGTATCATATCTCCATCCATTAGAATATGTAAACCTGATTTTGATCCTTTTCTTGCGATATTTCTCATCAAATTATGCGGAAAATTCTGGAATGGACCAACGATGGCGGTTCGAAGAGCGTTTTCTGCAAGAAATGGATTACTGTAGTTCGAACATTTGATGTACTGTAGCTTCGAATGAGAAAGTTAGGTATAGTGTAGCTTAGCTTTTTGGTATAGTGTACTTCTTTAGCTGTTTGGTATATCGTTGCTTACTGGTATACTGCAGCTTGGAATTGAAAAAATTGGTATACTGTAGCTTACGGGTATACTGTAGCTTATTGTTATATTGTAGGTCATTGGTATACTGTAGCCTGGTACGAAAAAAATAGGTGTACTGTAGCTTACTG</canonical>
            <polymorphic>GAACATCGAGAATTCGAGATTTTCAATAAGTTTCTTAGAATTCGGCCTCATTCGATCGGCTGTCTGCGATTTTCGACCGACCGAAATGGAAGCTATTTTTTTTTATATAGCCTTTCAGATTTTCAGATTGTTCTTATCACTTACGGATAAGGAACCAAACTTGCTGTAACCATATCAGTCTCCTCGCATTTTTTGAACCATTCATCCAATCCTTCAATTGAATATCCAGCCGTAAAGTAGCGGTGATGGAATTCGAATGTTCTAAAAAAAATAATTTTTGTGATTTTTGTGCCCAAAAAATTGGAAATTTTGAAATTTGGTTTTAGATGAAATTCGGATTTTTTTTTCTGAAAATTCAAATTTATTAAAAGCTTTTCGAGTAATTTTTTTTCGAAATTCTTAGGCCTTTATATTCTTTTATGACTCATTTTGGATTCTTTATTCTTAATTCCCAACCTTTGCAGTATTTTGGAATCCAATAATTTCTTATTATCAGTTARGATATCCATTCCAGATTCCGTTTCAAATCTCCGAATCGCCAAAACTTTTTTATGTTTTCCATCGATTATTCGATTTGCGATTTCTTTGATTTTTATGGCGAAATTTTGACTTGGTATCATATCTCCATCCATTAGAATATGTAAACCTGATTTTGATCCTTTTCTTGCGATATTTCTCATCAAATTATGCGGAAAATTCTGGAATGGACCAACGATGGCGGTTCGAAGAGCGTTTTCTGCAAGAAATGGATTACTGTAGTTCGAACATTTGATGTACTGTAGCTTCGAATGAGAAAGTTAGGTATAGTGTAGCTTAGCTTTTTGGTATAGTGTACTTCTTTAGCTGTTTGGTATATCGTTGCTTACTGGTATACTGCAGCTTGGAATTGAAAAAATTGGTATACTGTAGCTTACGGGTATACTGTAGCTTATTGTTATATTGTAGGTCATTGGTATACTGTAGCCTGGTACGAAAAAAATAGGTGTACTGTAGCTTACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>503 365 80 52</canonical_bands>
                <polymorphic_bands>555 365 80</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTATTCTTAATTCCCAACCT</pcr_primer_p1>
		<pcr_primer_p2>ATGAGAAATATCGCAAGAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TCTTTATTCTTAATTCCCAACCTTTGCAGTATTTTGGAATCCAATAATTTCTTATTATCAGTTAAGATATCCATTCCAGATTCCGTTTCAAATCTCCGAATCGCCAAAACTTTTTTATGTTTTCCATCGATTATTCGATTTGCGATTTCTTTGATTTTTATGGCGAAATTTTGACTTGGTATCATATCTCCATCCATTAGAATATGTAAACCTGATTTTGATCCTTTTCTTGCGATATTTCTCAT</canonical_amplicon>
		<polymorphic_amplicon>TCTTTATTCTTAATTCCCAACCTTTGCAGTATTTTGGAATCCAATAATTTCTTATTATCAGTTARGATATCCATTCCAGATTCCGTTTCAAATCTCCGAATCGCCAAAACTTTTTTATGTTTTCCATCGATTATTCGATTTGCGATTTCTTTGATTTTTATGGCGAAATTTTGACTTGGTATCATATCTCCATCCATTAGAATATGTAAACCTGATTTTGATCCTTTTCTTGCGATATTTCTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9090</snp_id>
        <super_contig>c004900897.Contig1</super_contig>
        <contig_pos>8893</contig_pos>
        <strand>+</strand>
        <context>ATTATCAGTT[A/G]RGATATCCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCCAACCTTTGCAGTATTTTGGAATCCAATAATTTCTTATTATCAGTT</left_flank>
        <right_flank>AGATATCCATTCCAGATTCCGTTTCAAATCTCCGAATCGCCAAAACTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAACATCGAGAATTCGAGATTTTCAATAAGTTTCTTAGAATTCGGCCTCATTCGATCGGCTGTCTGCGATTTTCGACCGACCGAAATGGAAGCTATTTTTTTTTATATAGCCTTTCAGATTTTCAGATTGTTCTTATCACTTACGGATAAGGAACCAAACTTGCTGTAACCATATCAGTCTCCTCGCATTTTTTGAACCATTCATCCAATCCTTCAATTGAATATCCAGCCGTAAAGTAGCGGTGATGGAATTCGAATGTTCTAAAAAAAATAATTTTTGTGATTTTTGTGCCCAAAAAATTGGAAATTTTGAAATTTGGTTTTAGATGAAATTCGGATTTTTTTTTCTGAAAATTCAAATTTATTAAAAGCTTTTCGAGTAATTTTTTTTCGAAATTCTTAGGCCTTTATATTCTTTTATGACTCATTTTGGATTCTTTATTCTTAATTCCCAACCTTTGCAGTATTTTGGAATCCAATAATTTCTTATTATCAGTTAAGATATCCATTCCAGATTCCGTTTCAAATCTCCGAATCGCCAAAACTTTTTTATGTTTTCCATCGATTATTCGATTTGCGATTTCTTTGATTTTTATGGCGAAATTTTGACTTGGTATCATATCTCCATCCATTAGAATATGTAAACCTGATTTTGATCCTTTTCTTGCGATATTTCTCATCAAATTATGCGGAAAATTCTGGAATGGACCAACGATGGCGGTTCGAAGAGCGTTTTCTGCAAGAAATGGATTACTGTAGTTCGAACATTTGATGTACTGTAGCTTCGAATGAGAAAGTTAGGTATAGTGTAGCTTAGCTTTTTGGTATAGTGTACTTCTTTAGCTGTTTGGTATATCGTTGCTTACTGGTATACTGCAGCTTGGAATTGAAAAAATTGGTATACTGTAGCTTACGGGTATACTGTAGCTTATTGTTATATTGTAGGTCATTGGTATACTGTAGCCTGGTACGAAAAAAATAGGTGTACTGTAGCTTACT</canonical>
            <polymorphic>CGAACATCGAGAATTCGAGATTTTCAATAAGTTTCTTAGAATTCGGCCTCATTCGATCGGCTGTCTGCGATTTTCGACCGACCGAAATGGAAGCTATTTTTTTTTATATAGCCTTTCAGATTTTCAGATTGTTCTTATCACTTACGGATAAGGAACCAAACTTGCTGTAACCATATCAGTCTCCTCGCATTTTTTGAACCATTCATCCAATCCTTCAATTGAATATCCAGCCGTAAAGTAGCGGTGATGGAATTCGAATGTTCTAAAAAAAATAATTTTTGTGATTTTTGTGCCCAAAAAATTGGAAATTTTGAAATTTGGTTTTAGATGAAATTCGGATTTTTTTTTCTGAAAATTCAAATTTATTAAAAGCTTTTCGAGTAATTTTTTTTCGAAATTCTTAGGCCTTTATATTCTTTTATGACTCATTTTGGATTCTTTATTCTTAATTCCCAACCTTTGCAGTATTTTGGAATCCAATAATTTCTTATTATCAGTTRAGATATCCATTCCAGATTCCGTTTCAAATCTCCGAATCGCCAAAACTTTTTTATGTTTTCCATCGATTATTCGATTTGCGATTTCTTTGATTTTTATGGCGAAATTTTGACTTGGTATCATATCTCCATCCATTAGAATATGTAAACCTGATTTTGATCCTTTTCTTGCGATATTTCTCATCAAATTATGCGGAAAATTCTGGAATGGACCAACGATGGCGGTTCGAAGAGCGTTTTCTGCAAGAAATGGATTACTGTAGTTCGAACATTTGATGTACTGTAGCTTCGAATGAGAAAGTTAGGTATAGTGTAGCTTAGCTTTTTGGTATAGTGTACTTCTTTAGCTGTTTGGTATATCGTTGCTTACTGGTATACTGCAGCTTGGAATTGAAAAAATTGGTATACTGTAGCTTACGGGTATACTGTAGCTTATTGTTATATTGTAGGTCATTGGTATACTGTAGCCTGGTACGAAAAAAATAGGTGTACTGTAGCTTACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 366 80 52</canonical_bands>
                <polymorphic_bands>554 366 80</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTATTCTTAATTCCCAACCT</pcr_primer_p1>
		<pcr_primer_p2>ATGAGAAATATCGCAAGAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TCTTTATTCTTAATTCCCAACCTTTGCAGTATTTTGGAATCCAATAATTTCTTATTATCAGTTAAGATATCCATTCCAGATTCCGTTTCAAATCTCCGAATCGCCAAAACTTTTTTATGTTTTCCATCGATTATTCGATTTGCGATTTCTTTGATTTTTATGGCGAAATTTTGACTTGGTATCATATCTCCATCCATTAGAATATGTAAACCTGATTTTGATCCTTTTCTTGCGATATTTCTCAT</canonical_amplicon>
		<polymorphic_amplicon>TCTTTATTCTTAATTCCCAACCTTTGCAGTATTTTGGAATCCAATAATTTCTTATTATCAGTTRAGATATCCATTCCAGATTCCGTTTCAAATCTCCGAATCGCCAAAACTTTTTTATGTTTTCCATCGATTATTCGATTTGCGATTTCTTTGATTTTTATGGCGAAATTTTGACTTGGTATCATATCTCCATCCATTAGAATATGTAAACCTGATTTTGATCCTTTTCTTGCGATATTTCTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9115</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>68628</contig_pos>
        <strand></strand>
        <context>TTTGGGGGAA[T/A]TTTGAAGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATAGATGTTATGGGGTGGAAATAGGATCGAAGATGAGAATTTTGGGGGAA</left_flank>
        <right_flank>TTTGAAGTTTGAAATTTGAAATTTTTCAGGGACCTAGCTAATTTCTAGGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTGAAAACGGAATTGGAATATAAGCCCCCGGATGTACAAATTATCTTATAACTCGCTTCAAAATTGAGCTAGAGACTTGATTTTTGTTGCAAATTACTTCAAATAAAAAAAGCCTTCATCCTAATTATTTAATTTTAAAAATGTTGAAAAAAATTGTATCTTCAAAATCTAGAGCACATATTTCTGCTCCAGGTGAGACTTTAGTATCCGGGGTGAAGCTAGGTGATTCTGATCCACACACACAAAAATTTAACAACTTTTTAACGGGCGCCCATTTGGTCGCCCATTTTATGAGCAATCCTCTCGACGGAATGCAACGCGTGGCACGAGTCGAAGGGGAGAAATAGTGTGAGGAGCTGGAGAGACGCAGAGAAAATTAGTGAAAATTGTTTTTATTTCGTGTCATTTTGATTATCACAATAGACTGGGGAAATGGAGTCGAGGATGATAGATGTTATGGGGTGGAAATAGGATCGAAGATGAGAATTTTGGGGGAATTTTGAAGTTTGAAATTTGAAATTTTTCAGGGACCTAGCTAATTTCTAGGTATTGTGAAAATTTCAAATTTTTTCTTTTCAAAAAATGCAAAATTCCTAGAATCCCTAGAATCGAAAAGCCACCAGAACCACTCTAATAGAATATCCCCTAAAGCCATAAACTTTGAGCTAATATATCTCGTTCTCTGTGAAAGATATCAAAAAGTTGTCAATTGAAAAGAATGCTACTGATAATATAATAAATATTTGATCAGTTAACAACTTTTTGATATCTCCTACAGTAACCGAGATAAGGAGTTTGAAGTGAAAGTATAGATGCATACCTCTCGAAGGAGCGAGAGGCACCAACTTTAAAGGCGCATAACTCAAAAACTATGATAGCTAGCTAACATTTTTAAACTAGCAAAATGTTAATCACAATATTAATAATGTTTTATCAGTTTTTTTTTATCAGTAATGGTTTACCACTTTTTGATATCTCTTACAGGAACCGAGATAAAC</canonical>
            <polymorphic>ATCTGAAAACGGAATTGGAATATAAGCCCCCGGATGTACAAATTATCTTATAACTCGCTTCAAAATTGAGCTAGAGACTTGATTTTTGTTGCAAATTACTTCAAATAAAAAAAGCCTTCATCCTAATTATTTAATTTTAAAAATGTTGAAAAAAATTGTATCTTCAAAATCTAGAGCACATATTTCTGCTCCAGGTGAGACTTTAGTATCCGGGGTGAAGCTAGGTGATTCTGATCCACACACACAAAAATTTAACAACTTTTTAACGGGCGCCCATTTGGTCGCCCATTTTATGAGCAATCCTCTCGACGGAATGCAACGCGTGGCACGAGTCGAAGGGGAGAAATAGTGTGAGGAGCTGGAGAGACGCAGAGAAAATTAGTGAAAATTGTTTTTATTTCGTGTCATTTTGATTATCACAATAGACTGGGGAAATGGAGTCGAGGATGATAGATGTTATGGGGTGGAAATAGGATCGAAGATGAGAATTTTGGGGGAAWTTTGAAGTTTGAAATTTGAAATTTTTCAGGGACCTAGCTAATTTCTAGGTATTGTGAAAATTTCAAATTTTTTCTTTTCAAAAAATGCAAAATTCCTAGAATCCCTAGAATCGAAAAGCCACCAGAACCACTCTAATAGAATATCCCCTAAAGCCATAAACTTTGAGCTAATATATCTCGTTCTCTGTGAAAGATATCAAAAAGTTGTCAATTGAAAAGAATGCTACTGATAATATAATAAATATTTGATCAGTTAACAACTTTTTGATATCTCCTACAGTAACCGAGATAAGGAGTTTGAAGTGAAAGTATAGATGCATACCTCTCGAAGGAGCGAGAGGCACCAACTTTAAAGGCGCATAACTCAAAAACTATGATAGCTAGCTAACATTTTTAAACTAGCAAAATGTTAATCACAATATTAATAATGTTTTATCAGTTTTTTTTTATCAGTAATGGTTTACCACTTTTTGATATCTCTTACAGGAACCGAGATAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>410 248 238 39 25 15 11 7 7</canonical_bands>
                <polymorphic_bands>410 248 238 39 26 25 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>291 128 119 100 95 31 30 28 25 23 21 20 19 15 12 11 10 8 7 7</canonical_bands>
                <polymorphic_bands>291 128 119 100 95 31 30 28 26 25 23 21 20 19 12 10 8 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAGAGAAAATTAGTGAAAATTG</pcr_primer_p1>
		<pcr_primer_p2>CTTTTCGATTCTAGGGATTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCAGAGAAAATTAGTGAAAATTGTTTTTATTTCGTGTCATTTTGATTATCACAATAGACTGGGGAAATGGAGTCGAGGATGATAGATGTTATGGGGTGGAAATAGGATCGAAGATGAGAATTTTGGGGGAATTTTGAAGTTTGAAATTTGAAATTTTTCAGGGACCTAGCTAATTTCTAGGTATTGTGAAAATTTCAAATTTTTTCTTTTCAAAAAATGCAAAATTCCTAGAATCCCTAGAATCGAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GCAGAGAAAATTAGTGAAAATTGTTTTTATTTCGTGTCATTTTGATTATCACAATAGACTGGGGAAATGGAGTCGAGGATGATAGATGTTATGGGGTGGAAATAGGATCGAAGATGAGAATTTTGGGGGAAWTTTGAAGTTTGAAATTTGAAATTTTTCAGGGACCTAGCTAATTTCTAGGTATTGTGAAAATTTCAAATTTTTTCTTTTCAAAAAATGCAAAATTCCTAGAATCCCTAGAATCGAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9116</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>68351</contig_pos>
        <strand></strand>
        <context>GGGTGAASCT[A/G]GGTGATTCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAGCACATATTTCTGCTCCAGGTGAGACTTTAGTATCCGGGGTGAAGCT</left_flank>
        <right_flank>GGTGATTCTGATCCACACACACAAAAATTTAACAACTTTTTAACGGGCGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGAGATGATAGTCCTGAAGTATGCGTTATTACAGGGGATAATTCGAAACACTGGTGAAAAAAATTGTTTGGGAGTTTTTATATAAAAATAGAGCCCAAAAAATGTTTAACATTTTACAACTAAAATGAAGCTTCTAGCTCAATTTTGAAGAGAATTATAGACAAATTTGTAAATCTTAGGGCGCGGTCGGCNNNNNNNNNNACTTTCCCGAATCTGGATTTCTAGGCCACCAAANTACAAATCGCTATAACTCAGCTCAAAATTAATATTTTTCATATCTGAAAACGGAATTGGAATATAAGCCCCCGGATGTACAAATTATCTTATAACTCGCTTCAAAATTGAGCTAGAGACTTGATTTTTGTTGCAAATTACTTCAAATAAAAAAAGCCTTCATCCTAATTATTTAATTTTAAAAATGTTGAAAAAAATTGTATCTTCAAAATCTAGAGCACATATTTCTGCTCCAGGTGAGACTTTAGTATCCGGGGTGAAGCTAGGTGATTCTGATCCACACACACAAAAATTTAACAACTTTTTAACGGGCGCCCATTTGGTCGCCCATTTTATGAGCAATCCTCTCGACGGAATGCAACGCGTGGCACGAGTCGAAGGGGAGAAATAGTGTGAGGAGCTGGAGAGACGCAGAGAAAATTAGTGAAAATTGTTTTTATTTCGTGTCATTTTGATTATCACAATAGACTGGGGAAATGGAGTCGAGGATGATAGATGTTATGGGGTGGAAATAGGATCGAAGATGAGAATTTTGGGGGAATTTTGAAGTTTGAAATTTGAAATTTTTCAGGGACCTAGCTAATTTCTAGGTATTGTGAAAATTTCAAATTTTTTCTTTTCAAAAAATGCAAAATTCCTAGAATCCCTAGAATCGAAAAGCCACCAGAACCACTCTAATAGAATATCCCCTAAAGCCATAAACTTTGAGCTAATATATCTCGTTCTCTGTGAAAGATATCAAAAAGTTGTCAATTGAAAAGAATG</canonical>
            <polymorphic>ACGAGATGATAGTCCTGAAGTATGCGTTATTACAGGGGATAATTCGAAACACTGGTGAAAAAAATTGTTTGGGAGTTTTTATATAAAAATAGAGCCCAAAAAATGTTTAACATTTTACAACTAAAATGAAGCTTCTAGCTCAATTTTGAAGAGAATTATAGACAAATTTGTAAATCTTAGGGCGCGGTCGGCNNNNNNNNNNACTTTCCCGAATCTGGATTTCTAGGCCACCAAANTACAAATCGCTATAACTCAGCTCAAAATTAATATTTTTCATATCTGAAAACGGAATTGGAATATAAGCCCCCGGATGTACAAATTATCTTATAACTCGCTTCAAAATTGAGCTAGAGACTTGATTTTTGTTGCAAATTACTTCAAATAAAAAAAGCCTTCATCCTAATTATTTAATTTTAAAAATGTTGAAAAAAATTGTATCTTCAAAATCTAGAGCACATATTTCTGCTCCAGGTGAGACTTTAGTATCCGGGGTGAAGCTRGGTGATTCTGATCCACACACACAAAAATTTAACAACTTTTTAACGGGCGCCCATTTGGTCGCCCATTTTATGAGCAATCCTCTCGACGGAATGCAACGCGTGGCACGAGTCGAAGGGGAGAAATAGTGTGAGGAGCTGGAGAGACGCAGAGAAAATTAGTGAAAATTGTTTTTATTTCGTGTCATTTTGATTATCACAATAGACTGGGGAAATGGAGTCGAGGATGATAGATGTTATGGGGTGGAAATAGGATCGAAGATGAGAATTTTGGGGGAATTTTGAAGTTTGAAATTTGAAATTTTTCAGGGACCTAGCTAATTTCTAGGTATTGTGAAAATTTCAAATTTTTTCTTTTCAAAAAATGCAAAATTCCTAGAATCCCTAGAATCGAAAAGCCACCAGAACCACTCTAATAGAATATCCCCTAAAGCCATAAACTTTGAGCTAATATATCTCGTTCTCTGTGAAAGATATCAAAAAGTTGTCAATTGAAAAGAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>313 135 125 118 100 88 51 50 11 9</canonical_bands>
                <polymorphic_bands>363 135 125 118 100 88 51 11 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTGTTTGGGAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CGAGAGGATTGCTCATAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>526</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTGTTTGGGAGTTTTTATATAAAAATAGAGCCCAAAAAATGTTTAACATTTTACAACTAAAATGAAGCTTCTAGCTCAATTTTGAAGAGAATTATAGACAAATTTGTAAATCTTAGGGCGCGGTCGGCNNNNNNNNNNACTTTCCCGAATCTGGATTTCTAGGCCACCAAANTACAAATCGCTATAACTCAGCTCAAAATTAATATTTTTCATATCTGAAAACGGAATTGGAATATAAGCCCCCGGATGTACAAATTATCTTATAACTCGCTTCAAAATTGAGCTAGAGACTTGATTTTTGTTGCAAATTACTTCAAATAAAAAAAGCCTTCATCCTAATTATTTAATTTTAAAAATGTTGAAAAAAATTGTATCTTCAAAATCTAGAGCACATATTTCTGCTCCAGGTGAGACTTTAGTATCCGGGGTGAAGCTAGGTGATTCTGATCCACACACACAAAAATTTAACAACTTTTTAACGGGCGCCCATTTGGTCGCCCATTTTATGAGCAATCCTCTCG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTGTTTGGGAGTTTTTATATAAAAATAGAGCCCAAAAAATGTTTAACATTTTACAACTAAAATGAAGCTTCTAGCTCAATTTTGAAGAGAATTATAGACAAATTTGTAAATCTTAGGGCGCGGTCGGCNNNNNNNNNNACTTTCCCGAATCTGGATTTCTAGGCCACCAAANTACAAATCGCTATAACTCAGCTCAAAATTAATATTTTTCATATCTGAAAACGGAATTGGAATATAAGCCCCCGGATGTACAAATTATCTTATAACTCGCTTCAAAATTGAGCTAGAGACTTGATTTTTGTTGCAAATTACTTCAAATAAAAAAAGCCTTCATCCTAATTATTTAATTTTAAAAATGTTGAAAAAAATTGTATCTTCAAAATCTAGAGCACATATTTCTGCTCCAGGTGAGACTTTAGTATCCGGGGTGAAGCTRGGTGATTCTGATCCACACACACAAAAATTTAACAACTTTTTAACGGGCGCCCATTTGGTCGCCCATTTTATGAGCAATCCTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9117</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>68348</contig_pos>
        <strand></strand>
        <context>CCGGGGTGAA[G/C]CTRGGTGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TCTAGAGCACATATTTCTGCTCCAGGTGAGACTTTAGTATCCGGGGTGAA</left_flank>
        <right_flank>CTAGGTGATTCTGATCCACACACACAAAAATTTAACAACTTTTTAACGGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGACGAGATGATAGTCCTGAAGTATGCGTTATTACAGGGGATAATTCGAAACACTGGTGAAAAAAATTGTTTGGGAGTTTTTATATAAAAATAGAGCCCAAAAAATGTTTAACATTTTACAACTAAAATGAAGCTTCTAGCTCAATTTTGAAGAGAATTATAGACAAATTTGTAAATCTTAGGGCGCGGTCGGCNNNNNNNNNNACTTTCCCGAATCTGGATTTCTAGGCCACCAAANTACAAATCGCTATAACTCAGCTCAAAATTAATATTTTTCATATCTGAAAACGGAATTGGAATATAAGCCCCCGGATGTACAAATTATCTTATAACTCGCTTCAAAATTGAGCTAGAGACTTGATTTTTGTTGCAAATTACTTCAAATAAAAAAAGCCTTCATCCTAATTATTTAATTTTAAAAATGTTGAAAAAAATTGTATCTTCAAAATCTAGAGCACATATTTCTGCTCCAGGTGAGACTTTAGTATCCGGGGTGAAGCTAGGTGATTCTGATCCACACACACAAAAATTTAACAACTTTTTAACGGGCGCCCATTTGGTCGCCCATTTTATGAGCAATCCTCTCGACGGAATGCAACGCGTGGCACGAGTCGAAGGGGAGAAATAGTGTGAGGAGCTGGAGAGACGCAGAGAAAATTAGTGAAAATTGTTTTTATTTCGTGTCATTTTGATTATCACAATAGACTGGGGAAATGGAGTCGAGGATGATAGATGTTATGGGGTGGAAATAGGATCGAAGATGAGAATTTTGGGGGAATTTTGAAGTTTGAAATTTGAAATTTTTCAGGGACCTAGCTAATTTCTAGGTATTGTGAAAATTTCAAATTTTTTCTTTTCAAAAAATGCAAAATTCCTAGAATCCCTAGAATCGAAAAGCCACCAGAACCACTCTAATAGAATATCCCCTAAAGCCATAAACTTTGAGCTAATATATCTCGTTCTCTGTGAAAGATATCAAAAAGTTGTCAATTGAAAAGA</canonical>
            <polymorphic>AAGACGAGATGATAGTCCTGAAGTATGCGTTATTACAGGGGATAATTCGAAACACTGGTGAAAAAAATTGTTTGGGAGTTTTTATATAAAAATAGAGCCCAAAAAATGTTTAACATTTTACAACTAAAATGAAGCTTCTAGCTCAATTTTGAAGAGAATTATAGACAAATTTGTAAATCTTAGGGCGCGGTCGGCNNNNNNNNNNACTTTCCCGAATCTGGATTTCTAGGCCACCAAANTACAAATCGCTATAACTCAGCTCAAAATTAATATTTTTCATATCTGAAAACGGAATTGGAATATAAGCCCCCGGATGTACAAATTATCTTATAACTCGCTTCAAAATTGAGCTAGAGACTTGATTTTTGTTGCAAATTACTTCAAATAAAAAAAGCCTTCATCCTAATTATTTAATTTTAAAAATGTTGAAAAAAATTGTATCTTCAAAATCTAGAGCACATATTTCTGCTCCAGGTGAGACTTTAGTATCCGGGGTGAASCTAGGTGATTCTGATCCACACACACAAAAATTTAACAACTTTTTAACGGGCGCCCATTTGGTCGCCCATTTTATGAGCAATCCTCTCGACGGAATGCAACGCGTGGCACGAGTCGAAGGGGAGAAATAGTGTGAGGAGCTGGAGAGACGCAGAGAAAATTAGTGAAAATTGTTTTTATTTCGTGTCATTTTGATTATCACAATAGACTGGGGAAATGGAGTCGAGGATGATAGATGTTATGGGGTGGAAATAGGATCGAAGATGAGAATTTTGGGGGAATTTTGAAGTTTGAAATTTGAAATTTTTCAGGGACCTAGCTAATTTCTAGGTATTGTGAAAATTTCAAATTTTTTCTTTTCAAAAAATGCAAAATTCCTAGAATCCCTAGAATCGAAAAGCCACCAGAACCACTCTAATAGAATATCCCCTAAAGCCATAAACTTTGAGCTAATATATCTCGTTCTCTGTGAAAGATATCAAAAAGTTGTCAATTGAAAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>179 150 138 134 130 118 91 53 7</canonical_bands>
                <polymorphic_bands>288 179 134 130 118 91 53 7</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>179 138 106 97 89 81 53 47 44 44 37 35 29 14 7</canonical_bands>
                <polymorphic_bands>244 179 97 89 81 53 47 44 44 37 35 29 14 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTGTTTGGGAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CGAGAGGATTGCTCATAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>526</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTGTTTGGGAGTTTTTATATAAAAATAGAGCCCAAAAAATGTTTAACATTTTACAACTAAAATGAAGCTTCTAGCTCAATTTTGAAGAGAATTATAGACAAATTTGTAAATCTTAGGGCGCGGTCGGCNNNNNNNNNNACTTTCCCGAATCTGGATTTCTAGGCCACCAAANTACAAATCGCTATAACTCAGCTCAAAATTAATATTTTTCATATCTGAAAACGGAATTGGAATATAAGCCCCCGGATGTACAAATTATCTTATAACTCGCTTCAAAATTGAGCTAGAGACTTGATTTTTGTTGCAAATTACTTCAAATAAAAAAAGCCTTCATCCTAATTATTTAATTTTAAAAATGTTGAAAAAAATTGTATCTTCAAAATCTAGAGCACATATTTCTGCTCCAGGTGAGACTTTAGTATCCGGGGTGAAGCTAGGTGATTCTGATCCACACACACAAAAATTTAACAACTTTTTAACGGGCGCCCATTTGGTCGCCCATTTTATGAGCAATCCTCTCG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTGTTTGGGAGTTTTTATATAAAAATAGAGCCCAAAAAATGTTTAACATTTTACAACTAAAATGAAGCTTCTAGCTCAATTTTGAAGAGAATTATAGACAAATTTGTAAATCTTAGGGCGCGGTCGGCNNNNNNNNNNACTTTCCCGAATCTGGATTTCTAGGCCACCAAANTACAAATCGCTATAACTCAGCTCAAAATTAATATTTTTCATATCTGAAAACGGAATTGGAATATAAGCCCCCGGATGTACAAATTATCTTATAACTCGCTTCAAAATTGAGCTAGAGACTTGATTTTTGTTGCAAATTACTTCAAATAAAAAAAGCCTTCATCCTAATTATTTAATTTTAAAAATGTTGAAAAAAATTGTATCTTCAAAATCTAGAGCACATATTTCTGCTCCAGGTGAGACTTTAGTATCCGGGGTGAASCTAGGTGATTCTGATCCACACACACAAAAATTTAACAACTTTTTAACGGGCGCCCATTTGGTCGCCCATTTTATGAGCAATCCTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9118</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>68304</contig_pos>
        <strand></strand>
        <context>AAAATCTAGA[G/T]CACATATTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTATTTAATTTTAAAAATGTTGAAAAAAATTGTATCTTCAAAATCTAGA</left_flank>
        <right_flank>CACATATTTCTGCTCCAGGTGAGACTTTAGTATCCGGGGTGAAGCTAGGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTAATTTCGCCTAGTTTTTTTTTGTAGGCTAGTTAACTATTAAAGACGAGATGATAGTCCTGAAGTATGCGTTATTACAGGGGATAATTCGAAACACTGGTGAAAAAAATTGTTTGGGAGTTTTTATATAAAAATAGAGCCCAAAAAATGTTTAACATTTTACAACTAAAATGAAGCTTCTAGCTCAATTTTGAAGAGAATTATAGACAAATTTGTAAATCTTAGGGCGCGGTCGGCNNNNNNNNNNACTTTCCCGAATCTGGATTTCTAGGCCACCAAANTACAAATCGCTATAACTCAGCTCAAAATTAATATTTTTCATATCTGAAAACGGAATTGGAATATAAGCCCCCGGATGTACAAATTATCTTATAACTCGCTTCAAAATTGAGCTAGAGACTTGATTTTTGTTGCAAATTACTTCAAATAAAAAAAGCCTTCATCCTAATTATTTAATTTTAAAAATGTTGAAAAAAATTGTATCTTCAAAATCTAGAGCACATATTTCTGCTCCAGGTGAGACTTTAGTATCCGGGGTGAAGCTAGGTGATTCTGATCCACACACACAAAAATTTAACAACTTTTTAACGGGCGCCCATTTGGTCGCCCATTTTATGAGCAATCCTCTCGACGGAATGCAACGCGTGGCACGAGTCGAAGGGGAGAAATAGTGTGAGGAGCTGGAGAGACGCAGAGAAAATTAGTGAAAATTGTTTTTATTTCGTGTCATTTTGATTATCACAATAGACTGGGGAAATGGAGTCGAGGATGATAGATGTTATGGGGTGGAAATAGGATCGAAGATGAGAATTTTGGGGGAATTTTGAAGTTTGAAATTTGAAATTTTTCAGGGACCTAGCTAATTTCTAGGTATTGTGAAAATTTCAAATTTTTTCTTTTCAAAAAATGCAAAATTCCTAGAATCCCTAGAATCGAAAAGCCACCAGAACCACTCTAATAGAATATCCCCTAAAGCCATAAACTTTGAGCTAATATAT</canonical>
            <polymorphic>TACTAATTTCGCCTAGTTTTTTTTTGTAGGCTAGTTAACTATTAAAGACGAGATGATAGTCCTGAAGTATGCGTTATTACAGGGGATAATTCGAAACACTGGTGAAAAAAATTGTTTGGGAGTTTTTATATAAAAATAGAGCCCAAAAAATGTTTAACATTTTACAACTAAAATGAAGCTTCTAGCTCAATTTTGAAGAGAATTATAGACAAATTTGTAAATCTTAGGGCGCGGTCGGCNNNNNNNNNNACTTTCCCGAATCTGGATTTCTAGGCCACCAAANTACAAATCGCTATAACTCAGCTCAAAATTAATATTTTTCATATCTGAAAACGGAATTGGAATATAAGCCCCCGGATGTACAAATTATCTTATAACTCGCTTCAAAATTGAGCTAGAGACTTGATTTTTGTTGCAAATTACTTCAAATAAAAAAAGCCTTCATCCTAATTATTTAATTTTAAAAATGTTGAAAAAAATTGTATCTTCAAAATCTAGAKCACATATTTCTGCTCCAGGTGAGACTTTAGTATCCGGGGTGAAGCTAGGTGATTCTGATCCACACACACAAAAATTTAACAACTTTTTAACGGGCGCCCATTTGGTCGCCCATTTTATGAGCAATCCTCTCGACGGAATGCAACGCGTGGCACGAGTCGAAGGGGAGAAATAGTGTGAGGAGCTGGAGAGACGCAGAGAAAATTAGTGAAAATTGTTTTTATTTCGTGTCATTTTGATTATCACAATAGACTGGGGAAATGGAGTCGAGGATGATAGATGTTATGGGGTGGAAATAGGATCGAAGATGAGAATTTTGGGGGAATTTTGAAGTTTGAAATTTGAAATTTTTCAGGGACCTAGCTAATTTCTAGGTATTGTGAAAATTTCAAATTTTTTCTTTTCAAAAAATGCAAAATTCCTAGAATCCCTAGAATCGAAAAGCCACCAGAACCACTCTAATAGAATATCCCCTAAAGCCATAAACTTTGAGCTAATATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>498 359 143</canonical_bands>
                <polymorphic_bands>857 143</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTGTTTGGGAGTTTTTAT</pcr_primer_p1>
		<pcr_primer_p2>GTGTGTGGATCAGAATCACC</pcr_primer_p2>
		<pcr_amplicon_size>461</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTGTTTGGGAGTTTTTATATAAAAATAGAGCCCAAAAAATGTTTAACATTTTACAACTAAAATGAAGCTTCTAGCTCAATTTTGAAGAGAATTATAGACAAATTTGTAAATCTTAGGGCGCGGTCGGCNNNNNNNNNNACTTTCCCGAATCTGGATTTCTAGGCCACCAAANTACAAATCGCTATAACTCAGCTCAAAATTAATATTTTTCATATCTGAAAACGGAATTGGAATATAAGCCCCCGGATGTACAAATTATCTTATAACTCGCTTCAAAATTGAGCTAGAGACTTGATTTTTGTTGCAAATTACTTCAAATAAAAAAAGCCTTCATCCTAATTATTTAATTTTAAAAATGTTGAAAAAAATTGTATCTTCAAAATCTAGAGCACATATTTCTGCTCCAGGTGAGACTTTAGTATCCGGGGTGAAGCTAGGTGATTCTGATCCACACAC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTGTTTGGGAGTTTTTATATAAAAATAGAGCCCAAAAAATGTTTAACATTTTACAACTAAAATGAAGCTTCTAGCTCAATTTTGAAGAGAATTATAGACAAATTTGTAAATCTTAGGGCGCGGTCGGCNNNNNNNNNNACTTTCCCGAATCTGGATTTCTAGGCCACCAAANTACAAATCGCTATAACTCAGCTCAAAATTAATATTTTTCATATCTGAAAACGGAATTGGAATATAAGCCCCCGGATGTACAAATTATCTTATAACTCGCTTCAAAATTGAGCTAGAGACTTGATTTTTGTTGCAAATTACTTCAAATAAAAAAAGCCTTCATCCTAATTATTTAATTTTAAAAATGTTGAAAAAAATTGTATCTTCAAAATCTAGAKCACATATTTCTGCTCCAGGTGAGACTTTAGTATCCGGGGTGAAGCTAGGTGATTCTGATCCACACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9119</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>68281</contig_pos>
        <strand></strand>
        <context>atGTTGAAAA[A/G]AATTGTATCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATAAAAAAAGCCTTCATCCTAATTATTTAATTTTAAAAATGTTGAAAA</left_flank>
        <right_flank>AATTGTATCTTCAAAATCTAGAGCACATATTTCTGCTCCAGGTGAGACTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGTCCCGAAATCATAAAAACATACTAATTTCGCCTAGTTTTTTTTTGTAGGCTAGTTAACTATTAAAGACGAGATGATAGTCCTGAAGTATGCGTTATTACAGGGGATAATTCGAAACACTGGTGAAAAAAATTGTTTGGGAGTTTTTATATAAAAATAGAGCCCAAAAAATGTTTAACATTTTACAACTAAAATGAAGCTTCTAGCTCAATTTTGAAGAGAATTATAGACAAATTTGTAAATCTTAGGGCGCGGTCGGCNNNNNNNNNNACTTTCCCGAATCTGGATTTCTAGGCCACCAAANTACAAATCGCTATAACTCAGCTCAAAATTAATATTTTTCATATCTGAAAACGGAATTGGAATATAAGCCCCCGGATGTACAAATTATCTTATAACTCGCTTCAAAATTGAGCTAGAGACTTGATTTTTGTTGCAAATTACTTCAAATAAAAAAAGCCTTCATCCTAATTATTTAATTTTAAAAATGTTGAAAAAAATTGTATCTTCAAAATCTAGAGCACATATTTCTGCTCCAGGTGAGACTTTAGTATCCGGGGTGAAGCTAGGTGATTCTGATCCACACACACAAAAATTTAACAACTTTTTAACGGGCGCCCATTTGGTCGCCCATTTTATGAGCAATCCTCTCGACGGAATGCAACGCGTGGCACGAGTCGAAGGGGAGAAATAGTGTGAGGAGCTGGAGAGACGCAGAGAAAATTAGTGAAAATTGTTTTTATTTCGTGTCATTTTGATTATCACAATAGACTGGGGAAATGGAGTCGAGGATGATAGATGTTATGGGGTGGAAATAGGATCGAAGATGAGAATTTTGGGGGAATTTTGAAGTTTGAAATTTGAAATTTTTCAGGGACCTAGCTAATTTCTAGGTATTGTGAAAATTTCAAATTTTTTCTTTTCAAAAAATGCAAAATTCCTAGAATCCCTAGAATCGAAAAGCCACCAGAACCACTCTAATAGAATATCCCCTAAAG</canonical>
            <polymorphic>GGTGTCCCGAAATCATAAAAACATACTAATTTCGCCTAGTTTTTTTTTGTAGGCTAGTTAACTATTAAAGACGAGATGATAGTCCTGAAGTATGCGTTATTACAGGGGATAATTCGAAACACTGGTGAAAAAAATTGTTTGGGAGTTTTTATATAAAAATAGAGCCCAAAAAATGTTTAACATTTTACAACTAAAATGAAGCTTCTAGCTCAATTTTGAAGAGAATTATAGACAAATTTGTAAATCTTAGGGCGCGGTCGGCNNNNNNNNNNACTTTCCCGAATCTGGATTTCTAGGCCACCAAANTACAAATCGCTATAACTCAGCTCAAAATTAATATTTTTCATATCTGAAAACGGAATTGGAATATAAGCCCCCGGATGTACAAATTATCTTATAACTCGCTTCAAAATTGAGCTAGAGACTTGATTTTTGTTGCAAATTACTTCAAATAAAAAAAGCCTTCATCCTAATTATTTAATTTTAAAAATGTTGAAAARAATTGTATCTTCAAAATCTAGAGCACATATTTCTGCTCCAGGTGAGACTTTAGTATCCGGGGTGAAGCTAGGTGATTCTGATCCACACACACAAAAATTTAACAACTTTTTAACGGGCGCCCATTTGGTCGCCCATTTTATGAGCAATCCTCTCGACGGAATGCAACGCGTGGCACGAGTCGAAGGGGAGAAATAGTGTGAGGAGCTGGAGAGACGCAGAGAAAATTAGTGAAAATTGTTTTTATTTCGTGTCATTTTGATTATCACAATAGACTGGGGAAATGGAGTCGAGGATGATAGATGTTATGGGGTGGAAATAGGATCGAAGATGAGAATTTTGGGGGAATTTTGAAGTTTGAAATTTGAAATTTTTCAGGGACCTAGCTAATTTCTAGGTATTGTGAAAATTTCAAATTTTTTCTTTTCAAAAAATGCAAAATTCCTAGAATCCCTAGAATCGAAAAGCCACCAGAACCACTCTAATAGAATATCCCCTAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTGTTTGGGAGTTTTTAT</pcr_primer_p1>
		<pcr_primer_p2>CCGGATACTAAAGTCTCACCT</pcr_primer_p2>
		<pcr_amplicon_size>431</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTGTTTGGGAGTTTTTATATAAAAATAGAGCCCAAAAAATGTTTAACATTTTACAACTAAAATGAAGCTTCTAGCTCAATTTTGAAGAGAATTATAGACAAATTTGTAAATCTTAGGGCGCGGTCGGCNNNNNNNNNNACTTTCCCGAATCTGGATTTCTAGGCCACCAAANTACAAATCGCTATAACTCAGCTCAAAATTAATATTTTTCATATCTGAAAACGGAATTGGAATATAAGCCCCCGGATGTACAAATTATCTTATAACTCGCTTCAAAATTGAGCTAGAGACTTGATTTTTGTTGCAAATTACTTCAAATAAAAAAAGCCTTCATCCTAATTATTTAATTTTAAAAATGTTGAAAAAAATTGTATCTTCAAAATCTAGAGCACATATTTCTGCTCCAGGTGAGACTTTAGTATCCGG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTGTTTGGGAGTTTTTATATAAAAATAGAGCCCAAAAAATGTTTAACATTTTACAACTAAAATGAAGCTTCTAGCTCAATTTTGAAGAGAATTATAGACAAATTTGTAAATCTTAGGGCGCGGTCGGCNNNNNNNNNNACTTTCCCGAATCTGGATTTCTAGGCCACCAAANTACAAATCGCTATAACTCAGCTCAAAATTAATATTTTTCATATCTGAAAACGGAATTGGAATATAAGCCCCCGGATGTACAAATTATCTTATAACTCGCTTCAAAATTGAGCTAGAGACTTGATTTTTGTTGCAAATTACTTCAAATAAAAAAAGCCTTCATCCTAATTATTTAATTTTAAAAATGTTGAAAARAATTGTATCTTCAAAATCTAGAGCACATATTTCTGCTCCAGGTGAGACTTTAGTATCCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9129</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>122950</contig_pos>
        <strand>-</strand>
        <context>TGAAAAATCA[A/G/T/C]TATTTTTGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G/T/C</alleles>
        <left_flank>TTTGCCCTGAAAATGAGCCTAAAAAGTGCTGTTTTAGCCTTGAAAAATCA</left_flank>
        <right_flank>TATTTTTGGTATTAAAAATATTACAAAACTGGTGGCCTAGAAAATCCAAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTACACGGCTCCAGTTGTGATTGCTCTCTTCGTCTCGCTTCTCTTGGGAATGCTCTACGTGAAGAGAAACAGTCTGGACTTCCTTTTCAACAGAACCATGTGGGGATTCGTTTGCATGGCTATCACCTTCATTTTCATGTCTGGACAAATGTGGAATCACATTCGTGGACCACCATTCATGATCACCAATCCAAACACCAAGGAGCCATCGTTCATCCATGGATCCACACAATTCCAGCTGATTGCTGAGACCTACATTGTTGGAATTCTCTATGCTCTCGTCGCCGTTGGATTCATTTGTGTCAACGAGGCAGCTGATCAGGCTAACGGAAAGGATAAGAAGAATCAGCAGAAGAAGGCTAACCCGTTGTCAAGCCTTTTTAGCATTCCAGCTAATAGTGAGTTTTTGGCCTTGAAAGTAGCTATCTTGCTCTAGAAAGAGCTATTTTTGCCCTGAAAATGAGCCTAAAAAGTGCTGTTTTAGCCTTGAAAAATCATTATTTTTGGTATTAAAAATATTACAAAACTGGTGGCCTAGAAAATCCAAAAAATTTTGGTTTCTAGGCCATGGGAATTTTTGACCAAATTGCAGAGTATTCCAAATTCTATTTATTAGTGTTTCGAAGCTAGAAAATATGATTTTTCAATCTAGATACACAAATTTAAAGCTTGTGGCCTAGAAATCCGAAAATTTGGGTTTCTAGGCCATCACTTTCCTAACAGCGTAATCTTTGAAAATGGCTATTTTTAGCCTCGAAAATGTCTATTTTTGCTCAAAATTCGTATAAAACATCCCGAATTGCTCCAATAATGCTGTGAAATTTCCAGCTCTCGCCATCGTCGGACTCGTCTTCATCTGCGTCTTCTTCTCGTTCCTGCTCTCAGTGTTCCGCTCCAAATACCGTGGATACCCATACTCTTTCTTGTTCTCGTAAGCCCCGCCCCCTTCTTTTAGATCCATTGCCGCCAACAGAAATCTGTGTTTTTTCTTCTTAAAT</canonical>
            <polymorphic>AACTACACGGCTCCAGTTGTGATTGCTCTCTTCGTCTCGCTTCTCTTGGGAATGCTCTACGTGAAGAGAAACAGTCTGGACTTCCTTTTCAACAGAACCATGTGGGGATTCGTTTGCATGGCTATCACCTTCATTTTCATGTCTGGACAAATGTGGAATCACATTCGTGGACCACCATTCATGATCACCAATCCAAACACCAAGGAGCCATCGTTCATCCATGGATCCACACAATTCCAGCTGATTGCTGAGACCTACATTGTTGGAATTCTCTATGCTCTCGTCGCCGTTGGATTCATTTGTGTCAACGAGGCAGCTGATCAGGCTAACGGAAAGGATAAGAAGAATCAGCAGAAGAAGGCTAACCCGTTGTCAAGCCTTTTTAGCATTCCAGCTAATAGTGAGTTTTTGGCCTTGAAAGTAGCTATCTTGCTCTAGAAAGAGCTATTTTTGCCCTGAAAATGAGCCTAAAAAGTGCTGTTTTAGCCTTGAAAAATCARTATTTTTGGTATTAAAAATATTACAAAACTGGTGGCCTAGAAAATCCAAAAAATTTTGGTTTCTAGGCCATGGGAATTTTTGACCAAATTGCAGAGTATTCCAAATTCTATTTATTAGTGTTTCGAAGCTAGAAAATATGATTTTTCAATCTAGATACACAAATTTAAAGCTTGTGGCCTAGAAATCCGAAAATTTGGGTTTCTAGGCCATCACTTTCCTAACAGCGTAATCTTTGAAAATGGCTATTTTTAGCCTCGAAAATGTCTATTTTTGCTCAAAATTCGTATAAAACATCCCGAATTGCTCCAATAATGCTGTGAAATTTCCAGCTCTCGCCATCGTCGGACTCGTCTTCATCTGCGTCTTCTTCTCGTTCCTGCTCTCAGTGTTCCGCTCCAAATACCGTGGATACCCATACTCTTTCTTGTTCTCGTAAGCCCCGCCCCCTTCTTTTAGATCCATTGCCGCCAACAGAAATCTGTGTTTTTTCTTCTTAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGAAAGTAGCTATCTTGCTCTA</pcr_primer_p1>
		<pcr_primer_p2>AATAGACATTTTCGAGGCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>357</pcr_amplicon_size>
		<canonical_amplicon>CTTGAAAGTAGCTATCTTGCTCTAGAAAGAGCTATTTTTGCCCTGAAAATGAGCCTAAAAAGTGCTGTTTTAGCCTTGAAAAATCATTATTTTTGGTATTAAAAATATTACAAAACTGGTGGCCTAGAAAATCCAAAAAATTTTGGTTTCTAGGCCATGGGAATTTTTGACCAAATTGCAGAGTATTCCAAATTCTATTTATTAGTGTTTCGAAGCTAGAAAATATGATTTTTCAATCTAGATACACAAATTTAAAGCTTGTGGCCTAGAAATCCGAAAATTTGGGTTTCTAGGCCATCACTTTCCTAACAGCGTAATCTTTGAAAATGGCTATTTTTAGCCTCGAAAATGTCTATT</canonical_amplicon>
		<polymorphic_amplicon>CTTGAAAGTAGCTATCTTGCTCTAGAAAGAGCTATTTTTGCCCTGAAAATGAGCCTAAAAAGTGCTGTTTTAGCCTTGAAAAATCARTATTTTTGGTATTAAAAATATTACAAAACTGGTGGCCTAGAAAATCCAAAAAATTTTGGTTTCTAGGCCATGGGAATTTTTGACCAAATTGCAGAGTATTCCAAATTCTATTTATTAGTGTTTCGAAGCTAGAAAATATGATTTTTCAATCTAGATACACAAATTTAAAGCTTGTGGCCTAGAAATCCGAAAATTTGGGTTTCTAGGCCATCACTTTCCTAACAGCGTAATCTTTGAAAATGGCTATTTTTAGCCTCGAAAATGTCTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9130</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>122904</contig_pos>
        <strand>-</strand>
        <context>GCTATTTTTG[A/G/C/T]CCTGAAAATG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G/C/T</alleles>
        <left_flank>AGTTTTTGGCCTTGAAAGTAGCTATCTTGCTCTAGAAAGAGCTATTTTTG</left_flank>
        <right_flank>CCTGAAAATGAGCCTAAAAAGTGCTGTTTTAGCCTTGAAAAATCATTATT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTCAAGACCAGACTGAAGTTCACATTCGTGTGATTCGCCCACCAAACTACACGGCTCCAGTTGTGATTGCTCTCTTCGTCTCGCTTCTCTTGGGAATGCTCTACGTGAAGAGAAACAGTCTGGACTTCCTTTTCAACAGAACCATGTGGGGATTCGTTTGCATGGCTATCACCTTCATTTTCATGTCTGGACAAATGTGGAATCACATTCGTGGACCACCATTCATGATCACCAATCCAAACACCAAGGAGCCATCGTTCATCCATGGATCCACACAATTCCAGCTGATTGCTGAGACCTACATTGTTGGAATTCTCTATGCTCTCGTCGCCGTTGGATTCATTTGTGTCAACGAGGCAGCTGATCAGGCTAACGGAAAGGATAAGAAGAATCAGCAGAAGAAGGCTAACCCGTTGTCAAGCCTTTTTAGCATTCCAGCTAATAGTGAGTTTTTGGCCTTGAAAGTAGCTATCTTGCTCTAGAAAGAGCTATTTTTGCCCTGAAAATGAGCCTAAAAAGTGCTGTTTTAGCCTTGAAAAATCATTATTTTTGGTATTAAAAATATTACAAAACTGGTGGCCTAGAAAATCCAAAAAATTTTGGTTTCTAGGCCATGGGAATTTTTGACCAAATTGCAGAGTATTCCAAATTCTATTTATTAGTGTTTCGAAGCTAGAAAATATGATTTTTCAATCTAGATACACAAATTTAAAGCTTGTGGCCTAGAAATCCGAAAATTTGGGTTTCTAGGCCATCACTTTCCTAACAGCGTAATCTTTGAAAATGGCTATTTTTAGCCTCGAAAATGTCTATTTTTGCTCAAAATTCGTATAAAACATCCCGAATTGCTCCAATAATGCTGTGAAATTTCCAGCTCTCGCCATCGTCGGACTCGTCTTCATCTGCGTCTTCTTCTCGTTCCTGCTCTCAGTGTTCCGCTCCAAATACCGTGGATACCCATACTCTTTCTTGTTCTCGTAAGCCCCGCCCCCTTCTTT</canonical>
            <polymorphic>CGTTCAAGACCAGACTGAAGTTCACATTCGTGTGATTCGCCCACCAAACTACACGGCTCCAGTTGTGATTGCTCTCTTCGTCTCGCTTCTCTTGGGAATGCTCTACGTGAAGAGAAACAGTCTGGACTTCCTTTTCAACAGAACCATGTGGGGATTCGTTTGCATGGCTATCACCTTCATTTTCATGTCTGGACAAATGTGGAATCACATTCGTGGACCACCATTCATGATCACCAATCCAAACACCAAGGAGCCATCGTTCATCCATGGATCCACACAATTCCAGCTGATTGCTGAGACCTACATTGTTGGAATTCTCTATGCTCTCGTCGCCGTTGGATTCATTTGTGTCAACGAGGCAGCTGATCAGGCTAACGGAAAGGATAAGAAGAATCAGCAGAAGAAGGCTAACCCGTTGTCAAGCCTTTTTAGCATTCCAGCTAATAGTGAGTTTTTGGCCTTGAAAGTAGCTATCTTGCTCTAGAAAGAGCTATTTTTGRCCTGAAAATGAGCCTAAAAAGTGCTGTTTTAGCCTTGAAAAATCATTATTTTTGGTATTAAAAATATTACAAAACTGGTGGCCTAGAAAATCCAAAAAATTTTGGTTTCTAGGCCATGGGAATTTTTGACCAAATTGCAGAGTATTCCAAATTCTATTTATTAGTGTTTCGAAGCTAGAAAATATGATTTTTCAATCTAGATACACAAATTTAAAGCTTGTGGCCTAGAAATCCGAAAATTTGGGTTTCTAGGCCATCACTTTCCTAACAGCGTAATCTTTGAAAATGGCTATTTTTAGCCTCGAAAATGTCTATTTTTGCTCAAAATTCGTATAAAACATCCCGAATTGCTCCAATAATGCTGTGAAATTTCCAGCTCTCGCCATCGTCGGACTCGTCTTCATCTGCGTCTTCTTCTCGTTCCTGCTCTCAGTGTTCCGCTCCAAATACCGTGGATACCCATACTCTTTCTTGTTCTCGTAAGCCCCGCCCCCTTCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>471 329 67 61 39 33</canonical_bands>
                <polymorphic_bands>471 329 100 61 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCAGCTAATAGTGAGTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>AATAGACATTTTCGAGGCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>382</pcr_amplicon_size>
		<canonical_amplicon>TTCCAGCTAATAGTGAGTTTTTGGCCTTGAAAGTAGCTATCTTGCTCTAGAAAGAGCTATTTTTGCCCTGAAAATGAGCCTAAAAAGTGCTGTTTTAGCCTTGAAAAATCATTATTTTTGGTATTAAAAATATTACAAAACTGGTGGCCTAGAAAATCCAAAAAATTTTGGTTTCTAGGCCATGGGAATTTTTGACCAAATTGCAGAGTATTCCAAATTCTATTTATTAGTGTTTCGAAGCTAGAAAATATGATTTTTCAATCTAGATACACAAATTTAAAGCTTGTGGCCTAGAAATCCGAAAATTTGGGTTTCTAGGCCATCACTTTCCTAACAGCGTAATCTTTGAAAATGGCTATTTTTAGCCTCGAAAATGTCTATT</canonical_amplicon>
		<polymorphic_amplicon>TTCCAGCTAATAGTGAGTTTTTGGCCTTGAAAGTAGCTATCTTGCTCTAGAAAGAGCTATTTTTGRCCTGAAAATGAGCCTAAAAAGTGCTGTTTTAGCCTTGAAAAATCATTATTTTTGGTATTAAAAATATTACAAAACTGGTGGCCTAGAAAATCCAAAAAATTTTGGTTTCTAGGCCATGGGAATTTTTGACCAAATTGCAGAGTATTCCAAATTCTATTTATTAGTGTTTCGAAGCTAGAAAATATGATTTTTCAATCTAGATACACAAATTTAAAGCTTGTGGCCTAGAAATCCGAAAATTTGGGTTTCTAGGCCATCACTTTCCTAACAGCGTAATCTTTGAAAATGGCTATTTTTAGCCTCGAAAATGTCTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9131</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>122889</contig_pos>
        <strand>-</strand>
        <context>CTTGCTCTAG[C/T/A/G]AAGAGCTATT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T/A/G</alleles>
        <left_flank>TTCCAGCTAATAGTGAGTTTTTGGCCTTGAAAGTAGCTATCTTGCTCTAG</left_flank>
        <right_flank>AAGAGCTATTTTTGCCCTGAAAATGAGCCTAAAAAGTGCTGTTTTAGCCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCTATTGGAAGATTCGTTCAAGACCAGACTGAAGTTCACATTCGTGTGATTCGCCCACCAAACTACACGGCTCCAGTTGTGATTGCTCTCTTCGTCTCGCTTCTCTTGGGAATGCTCTACGTGAAGAGAAACAGTCTGGACTTCCTTTTCAACAGAACCATGTGGGGATTCGTTTGCATGGCTATCACCTTCATTTTCATGTCTGGACAAATGTGGAATCACATTCGTGGACCACCATTCATGATCACCAATCCAAACACCAAGGAGCCATCGTTCATCCATGGATCCACACAATTCCAGCTGATTGCTGAGACCTACATTGTTGGAATTCTCTATGCTCTCGTCGCCGTTGGATTCATTTGTGTCAACGAGGCAGCTGATCAGGCTAACGGAAAGGATAAGAAGAATCAGCAGAAGAAGGCTAACCCGTTGTCAAGCCTTTTTAGCATTCCAGCTAATAGTGAGTTTTTGGCCTTGAAAGTAGCTATCTTGCTCTAGAAAGAGCTATTTTTGCCCTGAAAATGAGCCTAAAAAGTGCTGTTTTAGCCTTGAAAAATCATTATTTTTGGTATTAAAAATATTACAAAACTGGTGGCCTAGAAAATCCAAAAAATTTTGGTTTCTAGGCCATGGGAATTTTTGACCAAATTGCAGAGTATTCCAAATTCTATTTATTAGTGTTTCGAAGCTAGAAAATATGATTTTTCAATCTAGATACACAAATTTAAAGCTTGTGGCCTAGAAATCCGAAAATTTGGGTTTCTAGGCCATCACTTTCCTAACAGCGTAATCTTTGAAAATGGCTATTTTTAGCCTCGAAAATGTCTATTTTTGCTCAAAATTCGTATAAAACATCCCGAATTGCTCCAATAATGCTGTGAAATTTCCAGCTCTCGCCATCGTCGGACTCGTCTTCATCTGCGTCTTCTTCTCGTTCCTGCTCTCAGTGTTCCGCTCCAAATACCGTGGATACCCATACTCTTTCTTGTTCTCGTAAGC</canonical>
            <polymorphic>CGCTATTGGAAGATTCGTTCAAGACCAGACTGAAGTTCACATTCGTGTGATTCGCCCACCAAACTACACGGCTCCAGTTGTGATTGCTCTCTTCGTCTCGCTTCTCTTGGGAATGCTCTACGTGAAGAGAAACAGTCTGGACTTCCTTTTCAACAGAACCATGTGGGGATTCGTTTGCATGGCTATCACCTTCATTTTCATGTCTGGACAAATGTGGAATCACATTCGTGGACCACCATTCATGATCACCAATCCAAACACCAAGGAGCCATCGTTCATCCATGGATCCACACAATTCCAGCTGATTGCTGAGACCTACATTGTTGGAATTCTCTATGCTCTCGTCGCCGTTGGATTCATTTGTGTCAACGAGGCAGCTGATCAGGCTAACGGAAAGGATAAGAAGAATCAGCAGAAGAAGGCTAACCCGTTGTCAAGCCTTTTTAGCATTCCAGCTAATAGTGAGTTTTTGGCCTTGAAAGTAGCTATCTTGCTCTAGYAAGAGCTATTTTTGCCCTGAAAATGAGCCTAAAAAGTGCTGTTTTAGCCTTGAAAAATCATTATTTTTGGTATTAAAAATATTACAAAACTGGTGGCCTAGAAAATCCAAAAAATTTTGGTTTCTAGGCCATGGGAATTTTTGACCAAATTGCAGAGTATTCCAAATTCTATTTATTAGTGTTTCGAAGCTAGAAAATATGATTTTTCAATCTAGATACACAAATTTAAAGCTTGTGGCCTAGAAATCCGAAAATTTGGGTTTCTAGGCCATCACTTTCCTAACAGCGTAATCTTTGAAAATGGCTATTTTTAGCCTCGAAAATGTCTATTTTTGCTCAAAATTCGTATAAAACATCCCGAATTGCTCCAATAATGCTGTGAAATTTCCAGCTCTCGCCATCGTCGGACTCGTCTTCATCTGCGTCTTCTTCTCGTTCCTGCTCTCAGTGTTCCGCTCCAAATACCGTGGATACCCATACTCTTTCTTGTTCTCGTAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>255 216 145 143 117 67 37 20</canonical_bands>
                <polymorphic_bands>471 145 143 117 67 37 20</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>495 289 216</canonical_bands>
                <polymorphic_bands>711 289</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCTACATTGTTGGAATTCTCTAT</pcr_primer_p1>
		<pcr_primer_p2>TGATTTTTCAAGGCTAAAACA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACCTACATTGTTGGAATTCTCTATGCTCTCGTCGCCGTTGGATTCATTTGTGTCAACGAGGCAGCTGATCAGGCTAACGGAAAGGATAAGAAGAATCAGCAGAAGAAGGCTAACCCGTTGTCAAGCCTTTTTAGCATTCCAGCTAATAGTGAGTTTTTGGCCTTGAAAGTAGCTATCTTGCTCTAGAAAGAGCTATTTTTGCCCTGAAAATGAGCCTAAAAAGTGCTGTTTTAGCCTTGAAAAATCA</canonical_amplicon>
		<polymorphic_amplicon>ACCTACATTGTTGGAATTCTCTATGCTCTCGTCGCCGTTGGATTCATTTGTGTCAACGAGGCAGCTGATCAGGCTAACGGAAAGGATAAGAAGAATCAGCAGAAGAAGGCTAACCCGTTGTCAAGCCTTTTTAGCATTCCAGCTAATAGTGAGTTTTTGGCCTTGAAAGTAGCTATCTTGCTCTAGYAAGAGCTATTTTTGCCCTGAAAATGAGCCTAAAAAGTGCTGTTTTAGCCTTGAAAAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9132</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>142621</contig_pos>
        <strand></strand>
        <context>CGGTTGGTAG[A/T]AGGTGTTGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGCTCCCTCGTTTCCAGTGTAGAAGAAGATGGGACCGCCCGGTTGGTAG</left_flank>
        <right_flank>AGGTGTTGTTCCACATTATTCTGCAAGAATAGAAATTGCATGATTATCTG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGGGAATCATCGTTAATGGCTGGATGATCACTGATAAAGACTTTTTACGTGATTTTCATCACGGGAGAAGTAGCTAAAACTAGAAGAAGTTTCTAGAAGGTGTTTTCAGCCAAAAAGTTACTTACCCCTTGACAATATGTGGATACTTTTGCCTAAACCAAGCGGACAGCATTCCACCGTAAGATCCACCGAAAGAAATGACTTGTGAATCCCTATGGAACGTCTTCCCGAATTGATTATTGTCTCTCTTCAACTCAGTCAAAAGTTCTGCATAATCAGCCAGAGCCTGTTCACTAGTCAAGTATCCAACATTGGCTAGATTAGCATAAGATTGATTTCCGAATGGCTGAGTGGCTCCGTAGAATCTGTGCTCGGCGAAAATGATGGAAGCATTGAACATTGGTGCCAGGTCAAACATCATTCCAGTCGCAACTTCGAATGTCGACACTGCTCCCTCGTTTCCAGTGTAGAAGAAGATGGGACCGCCCGGTTGGTAGAAGGTGTTGTTCCACATTATTCTGCAAGAATAGAAATTGCATGATTATCTGGATCCCTAGCAAAAAGTGGTCAACTAACAAAATGTAGCTCTTTAAATTCTACATATTTTTGTAGTTCACAACTTTTTCATAGCTAGCTTAGTTTTGGAGATATGCGCTTTTAAAGACTACGCACTCATCAGGAGGGAGGAAGTGGCACGATATAGACGCAGAACTCGATAAGCCTATTAACTAGGAAAAATATATCAACTAACAAAGTTTGTAAAATTTCAAGATCTTCAGATTTTTAGTTTACAAATTTACAATAGCTAGCTAACTTTTGGAGATAAGAGGCTTTAAAGATTGCGCGCGCCTCTTGCAGCCCTCCAAGAGAAAGCGGCAAGAGGTGAGCGATCTTTAAAGGCGCATAACTCGCAAACAAGATTAGCTATTTAAAATCTGTCAACTAACAAAATTTGGGAAATTTTAAGGGCTACATGTTTTCAGTTTACAAATGCTTGA</canonical>
            <polymorphic>TCAGGGAATCATCGTTAATGGCTGGATGATCACTGATAAAGACTTTTTACGTGATTTTCATCACGGGAGAAGTAGCTAAAACTAGAAGAAGTTTCTAGAAGGTGTTTTCAGCCAAAAAGTTACTTACCCCTTGACAATATGTGGATACTTTTGCCTAAACCAAGCGGACAGCATTCCACCGTAAGATCCACCGAAAGAAATGACTTGTGAATCCCTATGGAACGTCTTCCCGAATTGATTATTGTCTCTCTTCAACTCAGTCAAAAGTTCTGCATAATCAGCCAGAGCCTGTTCACTAGTCAAGTATCCAACATTGGCTAGATTAGCATAAGATTGATTTCCGAATGGCTGAGTGGCTCCGTAGAATCTGTGCTCGGCGAAAATGATGGAAGCATTGAACATTGGTGCCAGGTCAAACATCATTCCAGTCGCAACTTCGAATGTCGACACTGCTCCCTCGTTTCCAGTGTAGAAGAAGATGGGACCGCCCGGTTGGTAGWAGGTGTTGTTCCACATTATTCTGCAAGAATAGAAATTGCATGATTATCTGGATCCCTAGCAAAAAGTGGTCAACTAACAAAATGTAGCTCTTTAAATTCTACATATTTTTGTAGTTCACAACTTTTTCATAGCTAGCTTAGTTTTGGAGATATGCGCTTTTAAAGACTACGCACTCATCAGGAGGGAGGAAGTGGCACGATATAGACGCAGAACTCGATAAGCCTATTAACTAGGAAAAATATATCAACTAACAAAGTTTGTAAAATTTCAAGATCTTCAGATTTTTAGTTTACAAATTTACAATAGCTAGCTAACTTTTGGAGATAAGAGGCTTTAAAGATTGCGCGCGCCTCTTGCAGCCCTCCAAGAGAAAGCGGCAAGAGGTGAGCGATCTTTAAAGGCGCATAACTCGCAAACAAGATTAGCTATTTAAAATCTGTCAACTAACAAAATTTGGGAAATTTTAAGGGCTACATGTTTTCAGTTTACAAATGCTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCAAACATCATTCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>ACACCAGGACTTTTGATATGAG</pcr_primer_p2>
		<pcr_amplicon_size>950</pcr_amplicon_size>
		<canonical_amplicon>GGTCAAACATCATTCCAGTCGCAACTTCGAATGTCGACACTGCTCCCTCGTTTCCAGTGTAGAAGAAGATGGGACCGCCCGGTTGGTAGAAGGTGTTGTTCCACATTATTC</canonical_amplicon>
		<polymorphic_amplicon>GGTCAAACATCATTCCAGTCGCAACTTCGAATGTCGACACTGCTCCCTCGTTTCCAGTGTAGAAGAAGATGGGACCGCCCGGTTGGTAGWAGGTGTTGTTCCACATTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9133</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>142659</contig_pos>
        <strand>-</strand>
        <context>AATAGAAATT[A/T/G]CATGATTYTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T/G</alleles>
        <left_flank>CCCGGTTGGTAGAAGGTGTTGTTCCACATTATTCTGCAAGAATAGAAATT</left_flank>
        <right_flank>CATGATTATCTGGATCCCTAGCAAAAAGTGGTCAACTAACAAAATGTAGC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGACTTTTTACGTGATTTTCATCACGGGAGAAGTAGCTAAAACTAGAAGAAGTTTCTAGAAGGTGTTTTCAGCCAAAAAGTTACTTACCCCTTGACAATATGTGGATACTTTTGCCTAAACCAAGCGGACAGCATTCCACCGTAAGATCCACCGAAAGAAATGACTTGTGAATCCCTATGGAACGTCTTCCCGAATTGATTATTGTCTCTCTTCAACTCAGTCAAAAGTTCTGCATAATCAGCCAGAGCCTGTTCACTAGTCAAGTATCCAACATTGGCTAGATTAGCATAAGATTGATTTCCGAATGGCTGAGTGGCTCCGTAGAATCTGTGCTCGGCGAAAATGATGGAAGCATTGAACATTGGTGCCAGGTCAAACATCATTCCAGTCGCAACTTCGAATGTCGACACTGCTCCCTCGTTTCCAGTGTAGAAGAAGATGGGACCGCCCGGTTGGTAGAAGGTGTTGTTCCACATTATTCTGCAAGAATAGAAATTGCATGATTATCTGGATCCCTAGCAAAAAGTGGTCAACTAACAAAATGTAGCTCTTTAAATTCTACATATTTTTGTAGTTCACAACTTTTTCATAGCTAGCTTAGTTTTGGAGATATGCGCTTTTAAAGACTACGCACTCATCAGGAGGGAGGAAGTGGCACGATATAGACGCAGAACTCGATAAGCCTATTAACTAGGAAAAATATATCAACTAACAAAGTTTGTAAAATTTCAAGATCTTCAGATTTTTAGTTTACAAATTTACAATAGCTAGCTAACTTTTGGAGATAAGAGGCTTTAAAGATTGCGCGCGCCTCTTGCAGCCCTCCAAGAGAAAGCGGCAAGAGGTGAGCGATCTTTAAAGGCGCATAACTCGCAAACAAGATTAGCTATTTAAAATCTGTCAACTAACAAAATTTGGGAAATTTTAAGGGCTACATGTTTTCAGTTTACAAATGCTTGATATCAAGCTTGGTTCTGGTCTAGGACTTCTGGAGATAT</canonical>
            <polymorphic>AAGACTTTTTACGTGATTTTCATCACGGGAGAAGTAGCTAAAACTAGAAGAAGTTTCTAGAAGGTGTTTTCAGCCAAAAAGTTACTTACCCCTTGACAATATGTGGATACTTTTGCCTAAACCAAGCGGACAGCATTCCACCGTAAGATCCACCGAAAGAAATGACTTGTGAATCCCTATGGAACGTCTTCCCGAATTGATTATTGTCTCTCTTCAACTCAGTCAAAAGTTCTGCATAATCAGCCAGAGCCTGTTCACTAGTCAAGTATCCAACATTGGCTAGATTAGCATAAGATTGATTTCCGAATGGCTGAGTGGCTCCGTAGAATCTGTGCTCGGCGAAAATGATGGAAGCATTGAACATTGGTGCCAGGTCAAACATCATTCCAGTCGCAACTTCGAATGTCGACACTGCTCCCTCGTTTCCAGTGTAGAAGAAGATGGGACCGCCCGGTTGGTAGAAGGTGTTGTTCCACATTATTCTGCAAGAATAGAAATTWCATGATTATCTGGATCCCTAGCAAAAAGTGGTCAACTAACAAAATGTAGCTCTTTAAATTCTACATATTTTTGTAGTTCACAACTTTTTCATAGCTAGCTTAGTTTTGGAGATATGCGCTTTTAAAGACTACGCACTCATCAGGAGGGAGGAAGTGGCACGATATAGACGCAGAACTCGATAAGCCTATTAACTAGGAAAAATATATCAACTAACAAAGTTTGTAAAATTTCAAGATCTTCAGATTTTTAGTTTACAAATTTACAATAGCTAGCTAACTTTTGGAGATAAGAGGCTTTAAAGATTGCGCGCGCCTCTTGCAGCCCTCCAAGAGAAAGCGGCAAGAGGTGAGCGATCTTTAAAGGCGCATAACTCGCAAACAAGATTAGCTATTTAAAATCTGTCAACTAACAAAATTTGGGAAATTTTAAGGGCTACATGTTTTCAGTTTACAAATGCTTGATATCAAGCTTGGTTCTGGTCTAGGACTTCTGGAGATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>319 251 234 181 15</canonical_bands>
                <polymorphic_bands>334 251 234 181</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTTTCCAGTGTAGAAGAAGAT</pcr_primer_p1>
		<pcr_primer_p2>CAGGACTTTTGATATGAGGTTAG</pcr_primer_p2>
		<pcr_amplicon_size>898</pcr_amplicon_size>
		<canonical_amplicon>CGTTTCCAGTGTAGAAGAAGATGGGACCGCCCGGTTGGTAGAAGGTGTTGTTCCACATTATTCTGCAAGAATAGAAATTGCATGATTATCTGGATCCCTAGC</canonical_amplicon>
		<polymorphic_amplicon>CGTTTCCAGTGTAGAAGAAGATGGGACCGCCCGGTTGGTAGAAGGTGTTGTTCCACATTATTCTGCAAGAATAGAAATTWCATGATTATCTGGATCCCTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9134</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>275993</contig_pos>
        <strand></strand>
        <context>TTTAGTGGTC[A/T]GGGGTAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGGTATCGGGTTACCCCTCACTGACCTCTTCCCGCCTTTTTTTAGTGGTC</left_flank>
        <right_flank>GGGGTAATTTTTCTCTATTTTTTTGCTTTTAGGCAAAGTTAATCTGAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCCCACCAATCTGACACTTCCGAGTTCGACTCCCCGCTGTGCTTTTTTCTTTTTGCTTCTTTTTATAAGCATCCTAGATGCTTTAAATAGTGTTTTTAAGGTTCCCCAGTAGTTTTTAAGGTAGAGAGACGCAGAGAAGCCAGAGTTCCTTGTTTCTCTGGGTCTCTAGGCCATAACTCAGCTAGTTTCAAAGTTATCAAAAAACTGTTAACTAAAAAGTTGTGTAGAATTTCAATCTTCACATTTTCTTGTTAGAAATTCTTCGCTAGCTATTTCAGTTCTTGAGATATTCAGATTTTTTTCTCGGTGCACATATCATCTTTCAGGACTAGTACTTTGCACATATTATACATAGAAATTCCATATTTTTTGTTTGTTTGTACGTTTTCTATATTAAAATCTGATCTGAAAAATGCGAAAAAAGAAACAACTATATACATTCTTTGGGGGTATCGGGTTACCCCTCACTGACCTCTTCCCGCCTTTTTTTAGTGGTCAGGGGTAATTTTTCTCTATTTTTTTGCTTTTAGGCAAAGTTAATCTGAAAAAGCTAAATATTCTACACATTTTTTTAGTTTACAGTACTTCGATAGCTAGAAAATTTGCTGAGATATAAGCCATATAAGTTTTTTGTCCAGTGGAGCGCACTTACTTCTTTCTTTTTTTTTTATTTTGAAAAAATCTGAGCTGTTTTAAGTTCTTAGCAACATTCTATCGATTGCTCCCCAATTTTTTCAAATTGGTGCCGCGTCACCGCGCGCAAGCGCGCTCCGCCGCACCCTCTCGTTTCTCTGTGTCTCTCTTCACTTTTCAAGGCGCATAACTCGCCTAGTTTCAGAGCTACGGAGATACTGTAAACTAAAAAGTTTTGTAAAATTTTAAGCTCTACATTTTACTAGTTAAACATTTTTTGCTAGCACTCATGGTTTTCGGAAAAATTTTGAAAATTTGCACCCACTTCTTTTTCATCATCTTTTTAAACCTTTGCTAAGTCCCAA</canonical>
            <polymorphic>TTGCCCACCAATCTGACACTTCCGAGTTCGACTCCCCGCTGTGCTTTTTTCTTTTTGCTTCTTTTTATAAGCATCCTAGATGCTTTAAATAGTGTTTTTAAGGTTCCCCAGTAGTTTTTAAGGTAGAGAGACGCAGAGAAGCCAGAGTTCCTTGTTTCTCTGGGTCTCTAGGCCATAACTCAGCTAGTTTCAAAGTTATCAAAAAACTGTTAACTAAAAAGTTGTGTAGAATTTCAATCTTCACATTTTCTTGTTAGAAATTCTTCGCTAGCTATTTCAGTTCTTGAGATATTCAGATTTTTTTCTCGGTGCACATATCATCTTTCAGGACTAGTACTTTGCACATATTATACATAGAAATTCCATATTTTTTGTTTGTTTGTACGTTTTCTATATTAAAATCTGATCTGAAAAATGCGAAAAAAGAAACAACTATATACATTCTTTGGGGGTATCGGGTTACCCCTCACTGACCTCTTCCCGCCTTTTTTTAGTGGTCWGGGGTAATTTTTCTCTATTTTTTTGCTTTTAGGCAAAGTTAATCTGAAAAAGCTAAATATTCTACACATTTTTTTAGTTTACAGTACTTCGATAGCTAGAAAATTTGCTGAGATATAAGCCATATAAGTTTTTTGTCCAGTGGAGCGCACTTACTTCTTTCTTTTTTTTTTATTTTGAAAAAATCTGAGCTGTTTTAAGTTCTTAGCAACATTCTATCGATTGCTCCCCAATTTTTTCAAATTGGTGCCGCGTCACCGCGCGCAAGCGCGCTCCGCCGCACCCTCTCGTTTCTCTGTGTCTCTCTTCACTTTTCAAGGCGCATAACTCGCCTAGTTTCAGAGCTACGGAGATACTGTAAACTAAAAAGTTTTGTAAAATTTTAAGCTCTACATTTTACTAGTTAAACATTTTTTGCTAGCACTCATGGTTTTCGGAAAAATTTTGAAAATTTGCACCCACTTCTTTTTCATCATCTTTTTAAACCTTTGCTAAGTCCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAGGACTAGTACTTTGCACAT</pcr_primer_p1>
		<pcr_primer_p2>AATGTGTAGAATATTTAGCTTTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTCAGGACTAGTACTTTGCACATATTATACATAGAAATTCCATATTTTTTGTTTGTTTGTACGTTTTCTATATTAAAATCTGATCTGAAAAATGCGAAAAAAGAAACAACTATATACATTCTTTGGGGGTATCGGGTTACCCCTCACTGACCTCTTCCCGCCTTTTTTTAGTGGTCAGGGGTAATTTTTCTCTATTTTTTTGCTTTTAGGCAAAGTTAATCTGAAAAAGCTAAATATTCTACACATT</canonical_amplicon>
		<polymorphic_amplicon>TTCAGGACTAGTACTTTGCACATATTATACATAGAAATTCCATATTTTTTGTTTGTTTGTACGTTTTCTATATTAAAATCTGATCTGAAAAATGCGAAAAAAGAAACAACTATATACATTCTTTGGGGGTATCGGGTTACCCCTCACTGACCTCTTCCCGCCTTTTTTTAGTGGTCWGGGGTAATTTTTCTCTATTTTTTTGCTTTTAGGCAAAGTTAATCTGAAAAAGCTAAATATTCTACACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9135</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>276033</contig_pos>
        <strand></strand>
        <context>TAGGCAAAGT[T/A]AATCTGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTAGTGGTCAGGGGTAATTTTTCTCTATTTTTTTGCTTTTAGGCAAAGT</left_flank>
        <right_flank>AATCTGAAAAAGCTAAATATTCTACACATTTTTTTAGTTTACAGTACTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGCTTTTTTCTTTTTGCTTCTTTTTATAAGCATCCTAGATGCTTTAAATAGTGTTTTTAAGGTTCCCCAGTAGTTTTTAAGGTAGAGAGACGCAGAGAAGCCAGAGTTCCTTGTTTCTCTGGGTCTCTAGGCCATAACTCAGCTAGTTTCAAAGTTATCAAAAAACTGTTAACTAAAAAGTTGTGTAGAATTTCAATCTTCACATTTTCTTGTTAGAAATTCTTCGCTAGCTATTTCAGTTCTTGAGATATTCAGATTTTTTTCTCGGTGCACATATCATCTTTCAGGACTAGTACTTTGCACATATTATACATAGAAATTCCATATTTTTTGTTTGTTTGTACGTTTTCTATATTAAAATCTGATCTGAAAAATGCGAAAAAAGAAACAACTATATACATTCTTTGGGGGTATCGGGTTACCCCTCACTGACCTCTTCCCGCCTTTTTTTAGTGGTCAGGGGTAATTTTTCTCTATTTTTTTGCTTTTAGGCAAAGTTAATCTGAAAAAGCTAAATATTCTACACATTTTTTTAGTTTACAGTACTTCGATAGCTAGAAAATTTGCTGAGATATAAGCCATATAAGTTTTTTGTCCAGTGGAGCGCACTTACTTCTTTCTTTTTTTTTTATTTTGAAAAAATCTGAGCTGTTTTAAGTTCTTAGCAACATTCTATCGATTGCTCCCCAATTTTTTCAAATTGGTGCCGCGTCACCGCGCGCAAGCGCGCTCCGCCGCACCCTCTCGTTTCTCTGTGTCTCTCTTCACTTTTCAAGGCGCATAACTCGCCTAGTTTCAGAGCTACGGAGATACTGTAAACTAAAAAGTTTTGTAAAATTTTAAGCTCTACATTTTACTAGTTAAACATTTTTTGCTAGCACTCATGGTTTTCGGAAAAATTTTGAAAATTTGCACCCACTTCTTTTTCATCATCTTTTTAAACCTTTGCTAAGTCCCAATCAGTCATTTTCCTTCTCATTTTTTGCACCAAGTGCTCCT</canonical>
            <polymorphic>GTGCTTTTTTCTTTTTGCTTCTTTTTATAAGCATCCTAGATGCTTTAAATAGTGTTTTTAAGGTTCCCCAGTAGTTTTTAAGGTAGAGAGACGCAGAGAAGCCAGAGTTCCTTGTTTCTCTGGGTCTCTAGGCCATAACTCAGCTAGTTTCAAAGTTATCAAAAAACTGTTAACTAAAAAGTTGTGTAGAATTTCAATCTTCACATTTTCTTGTTAGAAATTCTTCGCTAGCTATTTCAGTTCTTGAGATATTCAGATTTTTTTCTCGGTGCACATATCATCTTTCAGGACTAGTACTTTGCACATATTATACATAGAAATTCCATATTTTTTGTTTGTTTGTACGTTTTCTATATTAAAATCTGATCTGAAAAATGCGAAAAAAGAAACAACTATATACATTCTTTGGGGGTATCGGGTTACCCCTCACTGACCTCTTCCCGCCTTTTTTTAGTGGTCAGGGGTAATTTTTCTCTATTTTTTTGCTTTTAGGCAAAGTWAATCTGAAAAAGCTAAATATTCTACACATTTTTTTAGTTTACAGTACTTCGATAGCTAGAAAATTTGCTGAGATATAAGCCATATAAGTTTTTTGTCCAGTGGAGCGCACTTACTTCTTTCTTTTTTTTTTATTTTGAAAAAATCTGAGCTGTTTTAAGTTCTTAGCAACATTCTATCGATTGCTCCCCAATTTTTTCAAATTGGTGCCGCGTCACCGCGCGCAAGCGCGCTCCGCCGCACCCTCTCGTTTCTCTGTGTCTCTCTTCACTTTTCAAGGCGCATAACTCGCCTAGTTTCAGAGCTACGGAGATACTGTAAACTAAAAAGTTTTGTAAAATTTTAAGCTCTACATTTTACTAGTTAAACATTTTTTGCTAGCACTCATGGTTTTCGGAAAAATTTTGAAAATTTGCACCCACTTCTTTTTCATCATCTTTTTAAACCTTTGCTAAGTCCCAATCAGTCATTTTCCTTCTCATTTTTTGCACCAAGTGCTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>186 186 156 143 92 77 61 45 21 20 13</canonical_bands>
                <polymorphic_bands>299 186 186 92 77 61 45 21 20 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGTTTGTTTGTACGTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTAGCTATCGAAGTACTGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>TTTTGTTTGTTTGTACGTTTTCTATATTAAAATCTGATCTGAAAAATGCGAAAAAAGAAACAACTATATACATTCTTTGGGGGTATCGGGTTACCCCTCACTGACCTCTTCCCGCCTTTTTTTAGTGGTCAGGGGTAATTTTTCTCTATTTTTTTGCTTTTAGGCAAAGTTAATCTGAAAAAGCTAAATATTCTACACATTTTTTTAGTTTACAGTACTTCGATAGCTAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTGTTTGTTTGTACGTTTTCTATATTAAAATCTGATCTGAAAAATGCGAAAAAAGAAACAACTATATACATTCTTTGGGGGTATCGGGTTACCCCTCACTGACCTCTTCCCGCCTTTTTTTAGTGGTCAGGGGTAATTTTTCTCTATTTTTTTGCTTTTAGGCAAAGTWAATCTGAAAAAGCTAAATATTCTACACATTTTTTTAGTTTACAGTACTTCGATAGCTAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9136</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>276098</contig_pos>
        <strand></strand>
        <context>GCTAGAAAAT[T/G]TGCTGAGAYA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AAATATTCTACACATTTTTTTAGTTTACAGTACTTCGATAGCTAGAAAAT</left_flank>
        <right_flank>TGCTGAGATATAAGCCATATAAGTTTTTTGTCCAGTGGAGCGCACTTACT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCCAGTAGTTTTTAAGGTAGAGAGACGCAGAGAAGCCAGAGTTCCTTGTTTCTCTGGGTCTCTAGGCCATAACTCAGCTAGTTTCAAAGTTATCAAAAAACTGTTAACTAAAAAGTTGTGTAGAATTTCAATCTTCACATTTTCTTGTTAGAAATTCTTCGCTAGCTATTTCAGTTCTTGAGATATTCAGATTTTTTTCTCGGTGCACATATCATCTTTCAGGACTAGTACTTTGCACATATTATACATAGAAATTCCATATTTTTTGTTTGTTTGTACGTTTTCTATATTAAAATCTGATCTGAAAAATGCGAAAAAAGAAACAACTATATACATTCTTTGGGGGTATCGGGTTACCCCTCACTGACCTCTTCCCGCCTTTTTTTAGTGGTCAGGGGTAATTTTTCTCTATTTTTTTGCTTTTAGGCAAAGTTAATCTGAAAAAGCTAAATATTCTACACATTTTTTTAGTTTACAGTACTTCGATAGCTAGAAAATTTGCTGAGATATAAGCCATATAAGTTTTTTGTCCAGTGGAGCGCACTTACTTCTTTCTTTTTTTTTTATTTTGAAAAAATCTGAGCTGTTTTAAGTTCTTAGCAACATTCTATCGATTGCTCCCCAATTTTTTCAAATTGGTGCCGCGTCACCGCGCGCAAGCGCGCTCCGCCGCACCCTCTCGTTTCTCTGTGTCTCTCTTCACTTTTCAAGGCGCATAACTCGCCTAGTTTCAGAGCTACGGAGATACTGTAAACTAAAAAGTTTTGTAAAATTTTAAGCTCTACATTTTACTAGTTAAACATTTTTTGCTAGCACTCATGGTTTTCGGAAAAATTTTGAAAATTTGCACCCACTTCTTTTTCATCATCTTTTTAAACCTTTGCTAAGTCCCAATCAGTCATTTTCCTTCTCATTTTTTGCACCAAGTGCTCCTCCTTTTAATCCCAGAGAGTTCCAAGAAGAAACTTTTACTATTTCTTTTTTTTTTGGAAAAAAATT</canonical>
            <polymorphic>CCCCAGTAGTTTTTAAGGTAGAGAGACGCAGAGAAGCCAGAGTTCCTTGTTTCTCTGGGTCTCTAGGCCATAACTCAGCTAGTTTCAAAGTTATCAAAAAACTGTTAACTAAAAAGTTGTGTAGAATTTCAATCTTCACATTTTCTTGTTAGAAATTCTTCGCTAGCTATTTCAGTTCTTGAGATATTCAGATTTTTTTCTCGGTGCACATATCATCTTTCAGGACTAGTACTTTGCACATATTATACATAGAAATTCCATATTTTTTGTTTGTTTGTACGTTTTCTATATTAAAATCTGATCTGAAAAATGCGAAAAAAGAAACAACTATATACATTCTTTGGGGGTATCGGGTTACCCCTCACTGACCTCTTCCCGCCTTTTTTTAGTGGTCAGGGGTAATTTTTCTCTATTTTTTTGCTTTTAGGCAAAGTTAATCTGAAAAAGCTAAATATTCTACACATTTTTTTAGTTTACAGTACTTCGATAGCTAGAAAATKTGCTGAGATATAAGCCATATAAGTTTTTTGTCCAGTGGAGCGCACTTACTTCTTTCTTTTTTTTTTATTTTGAAAAAATCTGAGCTGTTTTAAGTTCTTAGCAACATTCTATCGATTGCTCCCCAATTTTTTCAAATTGGTGCCGCGTCACCGCGCGCAAGCGCGCTCCGCCGCACCCTCTCGTTTCTCTGTGTCTCTCTTCACTTTTCAAGGCGCATAACTCGCCTAGTTTCAGAGCTACGGAGATACTGTAAACTAAAAAGTTTTGTAAAATTTTAAGCTCTACATTTTACTAGTTAAACATTTTTTGCTAGCACTCATGGTTTTCGGAAAAATTTTGAAAATTTGCACCCACTTCTTTTTCATCATCTTTTTAAACCTTTGCTAAGTCCCAATCAGTCATTTTCCTTCTCATTTTTTGCACCAAGTGCTCCTCCTTTTAATCCCAGAGAGTTCCAAGAAGAAACTTTTACTATTTCTTTTTTTTTTGGAAAAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>275 243 158 124 100 62 29 9</canonical_bands>
                <polymorphic_bands>518 158 124 100 62 29 9</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>154 147 137 128 124 100 96 62 29 10 9 4</canonical_bands>
                <polymorphic_bands>224 154 147 137 124 100 62 29 10 9 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATATACATTCTTTGGGGGTATC</pcr_primer_p1>
		<pcr_primer_p2>GCTAAGAACTTAAAACAGCTCAG</pcr_primer_p2>
		<pcr_amplicon_size>275</pcr_amplicon_size>
		<canonical_amplicon>CTATATACATTCTTTGGGGGTATCGGGTTACCCCTCACTGACCTCTTCCCGCCTTTTTTTAGTGGTCAGGGGTAATTTTTCTCTATTTTTTTGCTTTTAGGCAAAGTTAATCTGAAAAAGCTAAATATTCTACACATTTTTTTAGTTTACAGTACTTCGATAGCTAGAAAATTTGCTGAGATATAAGCCATATAAGTTTTTTGTCCAGTGGAGCGCACTTACTTCTTTCTTTTTTTTTTATTTTGAAAAAATCTGAGCTGTTTTAAGTTCTTAGC</canonical_amplicon>
		<polymorphic_amplicon>CTATATACATTCTTTGGGGGTATCGGGTTACCCCTCACTGACCTCTTCCCGCCTTTTTTTAGTGGTCAGGGGTAATTTTTCTCTATTTTTTTGCTTTTAGGCAAAGTTAATCTGAAAAAGCTAAATATTCTACACATTTTTTTAGTTTACAGTACTTCGATAGCTAGAAAATKTGCTGAGATATAAGCCATATAAGTTTTTTGTCCAGTGGAGCGCACTTACTTCTTTCTTTTTTTTTTATTTTGAAAAAATCTGAGCTGTTTTAAGTTCTTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9137</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>276107</contig_pos>
        <strand></strand>
        <context>TKTGCTGAGA[T/C]ATAAGCCATA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACACATTTTTTTAGTTTACAGTACTTCGATAGCTAGAAAATTTGCTGAGA</left_flank>
        <right_flank>ATAAGCCATATAAGTTTTTTGTCCAGTGGAGCGCACTTACTTCTTTCTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTAAGGTAGAGAGACGCAGAGAAGCCAGAGTTCCTTGTTTCTCTGGGTCTCTAGGCCATAACTCAGCTAGTTTCAAAGTTATCAAAAAACTGTTAACTAAAAAGTTGTGTAGAATTTCAATCTTCACATTTTCTTGTTAGAAATTCTTCGCTAGCTATTTCAGTTCTTGAGATATTCAGATTTTTTTCTCGGTGCACATATCATCTTTCAGGACTAGTACTTTGCACATATTATACATAGAAATTCCATATTTTTTGTTTGTTTGTACGTTTTCTATATTAAAATCTGATCTGAAAAATGCGAAAAAAGAAACAACTATATACATTCTTTGGGGGTATCGGGTTACCCCTCACTGACCTCTTCCCGCCTTTTTTTAGTGGTCAGGGGTAATTTTTCTCTATTTTTTTGCTTTTAGGCAAAGTTAATCTGAAAAAGCTAAATATTCTACACATTTTTTTAGTTTACAGTACTTCGATAGCTAGAAAATTTGCTGAGATATAAGCCATATAAGTTTTTTGTCCAGTGGAGCGCACTTACTTCTTTCTTTTTTTTTTATTTTGAAAAAATCTGAGCTGTTTTAAGTTCTTAGCAACATTCTATCGATTGCTCCCCAATTTTTTCAAATTGGTGCCGCGTCACCGCGCGCAAGCGCGCTCCGCCGCACCCTCTCGTTTCTCTGTGTCTCTCTTCACTTTTCAAGGCGCATAACTCGCCTAGTTTCAGAGCTACGGAGATACTGTAAACTAAAAAGTTTTGTAAAATTTTAAGCTCTACATTTTACTAGTTAAACATTTTTTGCTAGCACTCATGGTTTTCGGAAAAATTTTGAAAATTTGCACCCACTTCTTTTTCATCATCTTTTTAAACCTTTGCTAAGTCCCAATCAGTCATTTTCCTTCTCATTTTTTGCACCAAGTGCTCCTCCTTTTAATCCCAGAGAGTTCCAAGAAGAAACTTTTACTATTTCTTTTTTTTTTGGAAAAAAATTTGGCGACGT</canonical>
            <polymorphic>TTTTTAAGGTAGAGAGACGCAGAGAAGCCAGAGTTCCTTGTTTCTCTGGGTCTCTAGGCCATAACTCAGCTAGTTTCAAAGTTATCAAAAAACTGTTAACTAAAAAGTTGTGTAGAATTTCAATCTTCACATTTTCTTGTTAGAAATTCTTCGCTAGCTATTTCAGTTCTTGAGATATTCAGATTTTTTTCTCGGTGCACATATCATCTTTCAGGACTAGTACTTTGCACATATTATACATAGAAATTCCATATTTTTTGTTTGTTTGTACGTTTTCTATATTAAAATCTGATCTGAAAAATGCGAAAAAAGAAACAACTATATACATTCTTTGGGGGTATCGGGTTACCCCTCACTGACCTCTTCCCGCCTTTTTTTAGTGGTCAGGGGTAATTTTTCTCTATTTTTTTGCTTTTAGGCAAAGTTAATCTGAAAAAGCTAAATATTCTACACATTTTTTTAGTTTACAGTACTTCGATAGCTAGAAAATTTGCTGAGAYATAAGCCATATAAGTTTTTTGTCCAGTGGAGCGCACTTACTTCTTTCTTTTTTTTTTATTTTGAAAAAATCTGAGCTGTTTTAAGTTCTTAGCAACATTCTATCGATTGCTCCCCAATTTTTTCAAATTGGTGCCGCGTCACCGCGCGCAAGCGCGCTCCGCCGCACCCTCTCGTTTCTCTGTGTCTCTCTTCACTTTTCAAGGCGCATAACTCGCCTAGTTTCAGAGCTACGGAGATACTGTAAACTAAAAAGTTTTGTAAAATTTTAAGCTCTACATTTTACTAGTTAAACATTTTTTGCTAGCACTCATGGTTTTCGGAAAAATTTTGAAAATTTGCACCCACTTCTTTTTCATCATCTTTTTAAACCTTTGCTAAGTCCCAATCAGTCATTTTCCTTCTCATTTTTTGCACCAAGTGCTCCTCCTTTTAATCCCAGAGAGTTCCAAGAAGAAACTTTTACTATTTCTTTTTTTTTTGGAAAAAAATTTGGCGACGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATATACATTCTTTGGGGGTATC</pcr_primer_p1>
		<pcr_primer_p2>GCTAAGAACTTAAAACAGCTCAG</pcr_primer_p2>
		<pcr_amplicon_size>275</pcr_amplicon_size>
		<canonical_amplicon>CTATATACATTCTTTGGGGGTATCGGGTTACCCCTCACTGACCTCTTCCCGCCTTTTTTTAGTGGTCAGGGGTAATTTTTCTCTATTTTTTTGCTTTTAGGCAAAGTTAATCTGAAAAAGCTAAATATTCTACACATTTTTTTAGTTTACAGTACTTCGATAGCTAGAAAATTTGCTGAGATATAAGCCATATAAGTTTTTTGTCCAGTGGAGCGCACTTACTTCTTTCTTTTTTTTTTATTTTGAAAAAATCTGAGCTGTTTTAAGTTCTTAGC</canonical_amplicon>
		<polymorphic_amplicon>CTATATACATTCTTTGGGGGTATCGGGTTACCCCTCACTGACCTCTTCCCGCCTTTTTTTAGTGGTCAGGGGTAATTTTTCTCTATTTTTTTGCTTTTAGGCAAAGTTAATCTGAAAAAGCTAAATATTCTACACATTTTTTTAGTTTACAGTACTTCGATAGCTAGAAAATTTGCTGAGAYATAAGCCATATAAGTTTTTTGTCCAGTGGAGCGCACTTACTTCTTTCTTTTTTTTTTATTTTGAAAAAATCTGAGCTGTTTTAAGTTCTTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9139</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>276203</contig_pos>
        <strand></strand>
        <context>TTCTTAGCAA[C/T]ATTCTATCGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTTTTTTTTTATTTTGAAAAAATCTGAGCTGTTTTAAGTTCTTAGCAA</left_flank>
        <right_flank>ATTCTATCGATTGCTCCCCAATTTTTTCAAATTGGTGCCGCGTCACCGCG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACTAAAAAGTTGTGTAGAATTTCAATCTTCACATTTTCTTGTTAGAAATTCTTCGCTAGCTATTTCAGTTCTTGAGATATTCAGATTTTTTTCTCGGTGCACATATCATCTTTCAGGACTAGTACTTTGCACATATTATACATAGAAATTCCATATTTTTTGTTTGTTTGTACGTTTTCTATATTAAAATCTGATCTGAAAAATGCGAAAAAAGAAACAACTATATACATTCTTTGGGGGTATCGGGTTACCCCTCACTGACCTCTTCCCGCCTTTTTTTAGTGGTCAGGGGTAATTTTTCTCTATTTTTTTGCTTTTAGGCAAAGTTAATCTGAAAAAGCTAAATATTCTACACATTTTTTTAGTTTACAGTACTTCGATAGCTAGAAAATTTGCTGAGATATAAGCCATATAAGTTTTTTGTCCAGTGGAGCGCACTTACTTCTTTCTTTTTTTTTTATTTTGAAAAAATCTGAGCTGTTTTAAGTTCTTAGCAACATTCTATCGATTGCTCCCCAATTTTTTCAAATTGGTGCCGCGTCACCGCGCGCAAGCGCGCTCCGCCGCACCCTCTCGTTTCTCTGTGTCTCTCTTCACTTTTCAAGGCGCATAACTCGCCTAGTTTCAGAGCTACGGAGATACTGTAAACTAAAAAGTTTTGTAAAATTTTAAGCTCTACATTTTACTAGTTAAACATTTTTTGCTAGCACTCATGGTTTTCGGAAAAATTTTGAAAATTTGCACCCACTTCTTTTTCATCATCTTTTTAAACCTTTGCTAAGTCCCAATCAGTCATTTTCCTTCTCATTTTTTGCACCAAGTGCTCCTCCTTTTAATCCCAGAGAGTTCCAAGAAGAAACTTTTACTATTTCTTTTTTTTTTGGAAAAAAATTTGGCGACGTCTTCTTTTTCTTCTTCTTGTTCTACTTGTTAAGACGAAGAAAATGGGATGGACAAGAAGAAGAAGAAAAAAAAAAGAAGAAAAAATGTTTCAATGG</canonical>
            <polymorphic>TAACTAAAAAGTTGTGTAGAATTTCAATCTTCACATTTTCTTGTTAGAAATTCTTCGCTAGCTATTTCAGTTCTTGAGATATTCAGATTTTTTTCTCGGTGCACATATCATCTTTCAGGACTAGTACTTTGCACATATTATACATAGAAATTCCATATTTTTTGTTTGTTTGTACGTTTTCTATATTAAAATCTGATCTGAAAAATGCGAAAAAAGAAACAACTATATACATTCTTTGGGGGTATCGGGTTACCCCTCACTGACCTCTTCCCGCCTTTTTTTAGTGGTCAGGGGTAATTTTTCTCTATTTTTTTGCTTTTAGGCAAAGTTAATCTGAAAAAGCTAAATATTCTACACATTTTTTTAGTTTACAGTACTTCGATAGCTAGAAAATTTGCTGAGATATAAGCCATATAAGTTTTTTGTCCAGTGGAGCGCACTTACTTCTTTCTTTTTTTTTTATTTTGAAAAAATCTGAGCTGTTTTAAGTTCTTAGCAAYATTCTATCGATTGCTCCCCAATTTTTTCAAATTGGTGCCGCGTCACCGCGCGCAAGCGCGCTCCGCCGCACCCTCTCGTTTCTCTGTGTCTCTCTTCACTTTTCAAGGCGCATAACTCGCCTAGTTTCAGAGCTACGGAGATACTGTAAACTAAAAAGTTTTGTAAAATTTTAAGCTCTACATTTTACTAGTTAAACATTTTTTGCTAGCACTCATGGTTTTCGGAAAAATTTTGAAAATTTGCACCCACTTCTTTTTCATCATCTTTTTAAACCTTTGCTAAGTCCCAATCAGTCATTTTCCTTCTCATTTTTTGCACCAAGTGCTCCTCCTTTTAATCCCAGAGAGTTCCAAGAAGAAACTTTTACTATTTCTTTTTTTTTTGGAAAAAAATTTGGCGACGTCTTCTTTTTCTTCTTCTTGTTCTACTTGTTAAGACGAAGAAAATGGGATGGACAAGAAGAAGAAGAAAAAAAAAAGAAGAAAAAATGTTTCAATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCGCACTTACTTCTTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGGTTTAAAAAGATGATGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>344</pcr_amplicon_size>
		<canonical_amplicon>AGCGCACTTACTTCTTTCTTTTTTTTTTATTTTGAAAAAATCTGAGCTGTTTTAAGTTCTTAGCAACATTCTATCGATTGCTCCCCAATTTTTTCAAATTGGTGCCGCGTCACCGCGCGCAAGCGCGCTCCGCCGCACCCTCTCGTTTCTCTGTGTCTCTCTTCACTTTTCAAGGCGCATAACTCGCCTAGTTTCAGAGCTACGGAGATACTGTAAACTAAAAAGTTTTGTAAAATTTTAAGCTCTACATTTTACTAGTTAAACATTTTTTGCTAGCACTCATGGTTTTCGGAAAAATTTTGAAAATTTGCACCCACTTCTTTTTCATCATCTTTTTAAACCTT</canonical_amplicon>
		<polymorphic_amplicon>AGCGCACTTACTTCTTTCTTTTTTTTTTATTTTGAAAAAATCTGAGCTGTTTTAAGTTCTTAGCAAYATTCTATCGATTGCTCCCCAATTTTTTCAAATTGGTGCCGCGTCACCGCGCGCAAGCGCGCTCCGCCGCACCCTCTCGTTTCTCTGTGTCTCTCTTCACTTTTCAAGGCGCATAACTCGCCTAGTTTCAGAGCTACGGAGATACTGTAAACTAAAAAGTTTTGTAAAATTTTAAGCTCTACATTTTACTAGTTAAACATTTTTTGCTAGCACTCATGGTTTTCGGAAAAATTTTGAAAATTTGCACCCACTTCTTTTTCATCATCTTTTTAAACCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9140</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>279446</contig_pos>
        <strand>+</strand>
        <context>TCCATGTTCC[C/T]AGCTGCTATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTACTGCAAACCCAACGAAACTATGTTTTTCAAATTTTCCATGTTCC</left_flank>
        <right_flank>AGCTGCTATTTCGTACCTAAAATCTCATTAAAGTCGTAAAGAGCAAAAGT</right_flank>
        <qual_score>146</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCCCATTAACCCTTTCAAAAACTCACTCCAAAAGTGAGAAATTAGTACTGAAATCACTTAAACAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACATCACAAGAAAGCCCGTATTTGAAACTATAAATGAGCAAATTTAGAAAAAATTCTGAGATGAAGGCTAAACATGGTTCCCTTGCTAGATTCAAAGGCAAAAGCACAACCACTGCGCCACGGTGTCACTAGAAGGAACTGTGTGGCTTTCAAATTATAAAGGAGGAAGCGGTGATGGAGGCGCGAAGGTGGTGGCGCGAAGGTGAGAGAGGGGTGGGTGCACCCTGCGCACCTGTGGTGTACTGGTTAGCAACTTGATCTACCAATCTCACGACCCGAGTTCGATTCCAAGTGCGGTCAAATCTTTTCTGGTTTTCCTGAGGACCCCGGTAACACATTTTAAATTACTGCAAACCCAACGAAACTATGTTTTTCAAATTTTCCATGTTCCCAGCTGCTATTTCGTACCTAAAATCTCATTAAAGTCGTAAAGAGCAAAAGTACAATACTCTCCTTCTCTCTCTCTCTCTCGAAGACTCTCTATCTCTCGACGACTCCATTACCATTGCTCATTGCAAATGACATCCAGGATAGGCTCCGCCCCTTTTCTTCTGCCCTGGGGCGAAAAAAGAAAAAAGTGTTTGCCATTCCTGACTAATAATTCATCCCTGAGGCTTAACCAATTTTTTTCTCTTCTTCTTCATCTCACCACAGAGAGAAAACTCACATAAATCAGATGGAAGGTCAAAGACTTTTGGGGAGGAGCAGAGTGTGTTGGATGTTGAGAGAGATCATTCCCCAATCATTTTATCACCTTCTTTCTCTCTTTTTTCGCCGCCTTTTTATCATTTTATCACCTCTGTTTTCGCCGATTTTCTGGTTTTTCTCACCTAGCCTACTTTTTGATGGCCACTTTTTGTGTTGGGAGACTCTACACAAAAACCAAAAACAG</canonical>
            <polymorphic>ACTCCCATTAACCCTTTCAAAAACTCACTCCAAAAGTGAGAAATTAGTACTGAAATCACTTAAACAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACATCACAAGAAAGCCCGTATTTGAAACTATAAATGAGCAAATTTAGAAAAAATTCTGAGATGAAGGCTAAACATGGTTCCCTTGCTAGATTCAAAGGCAAAAGCACAACCACTGCGCCACGGTGTCACTAGAAGGAACTGTGTGGCTTTCAAATTATAAAGGAGGAAGCGGTGATGGAGGCGCGAAGGTGGTGGCGCGAAGGTGAGAGAGGGGTGGGTGCACCCTGCGCACCTGTGGTGTACTGGTTAGCAACTTGATCTACCAATCTCACGACCCGAGTTCGATTCCAAGTGCGGTCAAATCTTTTCTGGTTTTCCTGAGGACCCCGGTAACACATTTTAAATTACTGCAAACCCAACGAAACTATGTTTTTCAAATTTTCCATGTTCCYAGCTGCTATTTCGTACCTAAAATCTCATTAAAGTCGTAAAGAGCAAAAGTACAATACTCTCCTTCTCTCTCTCTCTCTCGAAGACTCTCTATCTCTCGACGACTCCATTACCATTGCTCATTGCAAATGACATCCAGGATAGGCTCCGCCCCTTTTCTTCTGCCCTGGGGCGAAAAAAGAAAAAAGTGTTTGCCATTCCTGACTAATAATTCATCCCTGAGGCTTAACCAATTTTTTTCTCTTCTTCTTCATCTCACCACAGAGAGAAAACTCACATAAATCAGATGGAAGGTCAAAGACTTTTGGGGAGGAGCAGAGTGTGTTGGATGTTGAGAGAGATCATTCCCCAATCATTTTATCACCTTCTTTCTCTCTTTTTTCGCCGCCTTTTTATCATTTTATCACCTCTGTTTTCGCCGATTTTCTGGTTTTTCTCACCTAGCCTACTTTTTGATGGCCACTTTTTGTGTTGGGAGACTCTACACAAAAACCAAAAACAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTACTGGTTAGCAACTTGATCT</pcr_primer_p1>
		<pcr_primer_p2>GATAGAGAGTCTTCGAGAGAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGTACTGGTTAGCAACTTGATCTACCAATCTCACGACCCGAGTTCGATTCCAAGTGCGGTCAAATCTTTTCTGGTTTTCCTGAGGACCCCGGTAACACATTTTAAATTACTGCAAACCCAACGAAACTATGTTTTTCAAATTTTCCATGTTCCCAGCTGCTATTTCGTACCTAAAATCTCATTAAAGTCGTAAAGAGCAAAAGTACAATACTCTCCTTCTCTCTCTCTCTCTCGAAGACTCTCTATC</canonical_amplicon>
		<polymorphic_amplicon>TGTACTGGTTAGCAACTTGATCTACCAATCTCACGACCCGAGTTCGATTCCAAGTGCGGTCAAATCTTTTCTGGTTTTCCTGAGGACCCCGGTAACACATTTTAAATTACTGCAAACCCAACGAAACTATGTTTTTCAAATTTTCCATGTTCCYAGCTGCTATTTCGTACCTAAAATCTCATTAAAGTCGTAAAGAGCAAAAGTACAATACTCTCCTTCTCTCTCTCTCTCTCGAAGACTCTCTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9141</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>280281</contig_pos>
        <strand>+</strand>
        <context>AGTTGTTCCA[A/T]CAATTCCCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAGAACAGGGTTTTTCGTGTTTTTTTGCTATTTACAACCAGTTGTTCCA</left_flank>
        <right_flank>CAATTCCCACTTGTCAAATGGAATGTTAGTAGGTGTTCTTTAGTTTTAGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGATCATTCCCCAATCATTTTATCACCTTCTTTCTCTCTTTTTTCGCCGCCTTTTTATCATTTTATCACCTCTGTTTTCGCCGATTTTCTGGTTTTTCTCACCTAGCCTACTTTTTGATGGCCACTTTTTGTGTTGGGAGACTCTACACAAAAACCAAAAACAGTTTGAGCCACCTGGGGTTCGAACCCGGGTAGTGAGATTAGTAGACAGGGTTGTTAGCCAGTAAACCACGGTGGTACGGGCTACCTAGGTAGCGTTACCACCACCACCGCTCGCCACCGCGGCGCTCACCACTGAGGGCGCCGCGTCACACCTTCCTATACGCCCTTTACCTCCACCACAACTTTGCGCCCTGTGGCTCACTGGTTACCGTTTTGTCTTTGAATCTAGAGGTCGCGGGTTCGAACCCAACTGGTGCCATTTTCTTTTTTATTGTTTTTTAGGATGAAAGAACAGGGTTTTTCGTGTTTTTTTGCTATTTACAACCAGTTGTTCCATCAATTCCCACTTGTCAAATGGAATGTTAGTAGGTGTTCTTTAGTTTTAGTAGTGTCGTTTGTTCGCAAGTGCTAAATTTTTCTCTAGTTTTTAGTTTTCTTCTAGAACCTAATTTCGTCTAGAGTAGAGCACATATTTTGCTCTTCTTCCTCTTTTTCTCATTGAAAATATGTTTCATTCCCCATTTTTCCGCCATGCTCTAATGATTTTCCTCCTCTCTTTTCTTTTCTAATGTTTCTGAGACTTCACATAAAGTTTAAATTGAAGGAAAAATCATTAAAAAGAAAAAAAAAGACTTTGGACGAGGGTGGGAGTTGAACCCTCGATGTGAGATTGGTGGGCAAAACTGTAAACCAGTAGGCTAACGCGCATACAGGAATATAGGCCCCGGTTGTCGTATACCACACACCGGGTTTCCTTTTCGTTTCCTGGGCGCCGCCGCGCCGCGGCGACAAGCCTGTCGGCGAGCTAGTCACGCCCGAACACCTGTGGTGTACTGG</canonical>
            <polymorphic>GAGATCATTCCCCAATCATTTTATCACCTTCTTTCTCTCTTTTTTCGCCGCCTTTTTATCATTTTATCACCTCTGTTTTCGCCGATTTTCTGGTTTTTCTCACCTAGCCTACTTTTTGATGGCCACTTTTTGTGTTGGGAGACTCTACACAAAAACCAAAAACAGTTTGAGCCACCTGGGGTTCGAACCCGGGTAGTGAGATTAGTAGACAGGGTTGTTAGCCAGTAAACCACGGTGGTACGGGCTACCTAGGTAGCGTTACCACCACCACCGCTCGCCACCGCGGCGCTCACCACTGAGGGCGCCGCGTCACACCTTCCTATACGCCCTTTACCTCCACCACAACTTTGCGCCCTGTGGCTCACTGGTTACCGTTTTGTCTTTGAATCTAGAGGTCGCGGGTTCGAACCCAACTGGTGCCATTTTCTTTTTTATTGTTTTTTAGGATGAAAGAACAGGGTTTTTCGTGTTTTTTTGCTATTTACAACCAGTTGTTCCAWCAATTCCCACTTGTCAAATGGAATGTTAGTAGGTGTTCTTTAGTTTTAGTAGTGTCGTTTGTTCGCAAGTGCTAAATTTTTCTCTAGTTTTTAGTTTTCTTCTAGAACCTAATTTCGTCTAGAGTAGAGCACATATTTTGCTCTTCTTCCTCTTTTTCTCATTGAAAATATGTTTCATTCCCCATTTTTCCGCCATGCTCTAATGATTTTCCTCCTCTCTTTTCTTTTCTAATGTTTCTGAGACTTCACATAAAGTTTAAATTGAAGGAAAAATCATTAAAAAGAAAAAAAAAGACTTTGGACGAGGGTGGGAGTTGAACCCTCGATGTGAGATTGGTGGGCAAAACTGTAAACCAGTAGGCTAACGCGCATACAGGAATATAGGCCCCGGTTGTCGTATACCACACACCGGGTTTCCTTTTCGTTTCCTGGGCGCCGCCGCGCCGCGGCGACAAGCCTGTCGGCGAGCTAGTCACGCCCGAACACCTGTGGTGTACTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCCTATACGCCCTTTACC</pcr_primer_p1>
		<pcr_primer_p2>CGAACAAACGACACTACTAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCCTATACGCCCTTTACCTCCACCACAACTTTGCGCCCTGTGGCTCACTGGTTACCGTTTTGTCTTTGAATCTAGAGGTCGCGGGTTCGAACCCAACTGGTGCCATTTTCTTTTTTATTGTTTTTTAGGATGAAAGAACAGGGTTTTTCGTGTTTTTTTGCTATTTACAACCAGTTGTTCCATCAATTCCCACTTGTCAAATGGAATGTTAGTAGGTGTTCTTTAGTTTTAGTAGTGTCGTTTGTTCG</canonical_amplicon>
		<polymorphic_amplicon>CTTCCTATACGCCCTTTACCTCCACCACAACTTTGCGCCCTGTGGCTCACTGGTTACCGTTTTGTCTTTGAATCTAGAGGTCGCGGGTTCGAACCCAACTGGTGCCATTTTCTTTTTTATTGTTTTTTAGGATGAAAGAACAGGGTTTTTCGTGTTTTTTTGCTATTTACAACCAGTTGTTCCAWCAATTCCCACTTGTCAAATGGAATGTTAGTAGGTGTTCTTTAGTTTTAGTAGTGTCGTTTGTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9142</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>280349</contig_pos>
        <strand>+</strand>
        <context>TTTGTTCGCA[A/G]GTGCTAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGGAATGTTAGTAGGTGTTCTTTAGTTTTAGTAGTGTCGTTTGTTCGCA</left_flank>
        <right_flank>GTGCTAAATTTTTCTCTAGTTTTTAGTTTTCTTCTAGAACCTAATTTCGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTCTGTTTTCGCCGATTTTCTGGTTTTTCTCACCTAGCCTACTTTTTGATGGCCACTTTTTGTGTTGGGAGACTCTACACAAAAACCAAAAACAGTTTGAGCCACCTGGGGTTCGAACCCGGGTAGTGAGATTAGTAGACAGGGTTGTTAGCCAGTAAACCACGGTGGTACGGGCTACCTAGGTAGCGTTACCACCACCACCGCTCGCCACCGCGGCGCTCACCACTGAGGGCGCCGCGTCACACCTTCCTATACGCCCTTTACCTCCACCACAACTTTGCGCCCTGTGGCTCACTGGTTACCGTTTTGTCTTTGAATCTAGAGGTCGCGGGTTCGAACCCAACTGGTGCCATTTTCTTTTTTATTGTTTTTTAGGATGAAAGAACAGGGTTTTTCGTGTTTTTTTGCTATTTACAACCAGTTGTTCCATCAATTCCCACTTGTCAAATGGAATGTTAGTAGGTGTTCTTTAGTTTTAGTAGTGTCGTTTGTTCGCAAGTGCTAAATTTTTCTCTAGTTTTTAGTTTTCTTCTAGAACCTAATTTCGTCTAGAGTAGAGCACATATTTTGCTCTTCTTCCTCTTTTTCTCATTGAAAATATGTTTCATTCCCCATTTTTCCGCCATGCTCTAATGATTTTCCTCCTCTCTTTTCTTTTCTAATGTTTCTGAGACTTCACATAAAGTTTAAATTGAAGGAAAAATCATTAAAAAGAAAAAAAAAGACTTTGGACGAGGGTGGGAGTTGAACCCTCGATGTGAGATTGGTGGGCAAAACTGTAAACCAGTAGGCTAACGCGCATACAGGAATATAGGCCCCGGTTGTCGTATACCACACACCGGGTTTCCTTTTCGTTTCCTGGGCGCCGCCGCGCCGCGGCGACAAGCCTGTCGGCGAGCTAGTCACGCCCGAACACCTGTGGTGTACTGGTAACATCTCTGACTTCTAATCTAGCTACCCGGGTTCGATTCCTAGGTGCTTCAAATAGTTTTTTTTTA</canonical>
            <polymorphic>ACCTCTGTTTTCGCCGATTTTCTGGTTTTTCTCACCTAGCCTACTTTTTGATGGCCACTTTTTGTGTTGGGAGACTCTACACAAAAACCAAAAACAGTTTGAGCCACCTGGGGTTCGAACCCGGGTAGTGAGATTAGTAGACAGGGTTGTTAGCCAGTAAACCACGGTGGTACGGGCTACCTAGGTAGCGTTACCACCACCACCGCTCGCCACCGCGGCGCTCACCACTGAGGGCGCCGCGTCACACCTTCCTATACGCCCTTTACCTCCACCACAACTTTGCGCCCTGTGGCTCACTGGTTACCGTTTTGTCTTTGAATCTAGAGGTCGCGGGTTCGAACCCAACTGGTGCCATTTTCTTTTTTATTGTTTTTTAGGATGAAAGAACAGGGTTTTTCGTGTTTTTTTGCTATTTACAACCAGTTGTTCCATCAATTCCCACTTGTCAAATGGAATGTTAGTAGGTGTTCTTTAGTTTTAGTAGTGTCGTTTGTTCGCARGTGCTAAATTTTTCTCTAGTTTTTAGTTTTCTTCTAGAACCTAATTTCGTCTAGAGTAGAGCACATATTTTGCTCTTCTTCCTCTTTTTCTCATTGAAAATATGTTTCATTCCCCATTTTTCCGCCATGCTCTAATGATTTTCCTCCTCTCTTTTCTTTTCTAATGTTTCTGAGACTTCACATAAAGTTTAAATTGAAGGAAAAATCATTAAAAAGAAAAAAAAAGACTTTGGACGAGGGTGGGAGTTGAACCCTCGATGTGAGATTGGTGGGCAAAACTGTAAACCAGTAGGCTAACGCGCATACAGGAATATAGGCCCCGGTTGTCGTATACCACACACCGGGTTTCCTTTTCGTTTCCTGGGCGCCGCCGCGCCGCGGCGACAAGCCTGTCGGCGAGCTAGTCACGCCCGAACACCTGTGGTGTACTGGTAACATCTCTGACTTCTAATCTAGCTACCCGGGTTCGATTCCTAGGTGCTTCAAATAGTTTTTTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTATTTACAACCAGTTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>AAAAGAGAGGAGGAAAATCATTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GCTATTTACAACCAGTTGTTCCATCAATTCCCACTTGTCAAATGGAATGTTAGTAGGTGTTCTTTAGTTTTAGTAGTGTCGTTTGTTCGCAAGTGCTAAATTTTTCTCTAGTTTTTAGTTTTCTTCTAGAACCTAATTTCGTCTAGAGTAGAGCACATATTTTGCTCTTCTTCCTCTTTTTCTCATTGAAAATATGTTTCATTCCCCATTTTTCCGCCATGCTCTAATGATTTTCCTCCTCTCTTTT</canonical_amplicon>
		<polymorphic_amplicon>GCTATTTACAACCAGTTGTTCCATCAATTCCCACTTGTCAAATGGAATGTTAGTAGGTGTTCTTTAGTTTTAGTAGTGTCGTTTGTTCGCARGTGCTAAATTTTTCTCTAGTTTTTAGTTTTCTTCTAGAACCTAATTTCGTCTAGAGTAGAGCACATATTTTGCTCTTCTTCCTCTTTTTCTCATTGAAAATATGTTTCATTCCCCATTTTTCCGCCATGCTCTAATGATTTTCCTCCTCTCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9143</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>280542</contig_pos>
        <strand>+</strand>
        <context>TAAAGTTTAA[A/G]TTGAAGGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTCCTCTCTTTTCTTTTCTAATGTTTCTGAGACTTCACATAAAGTTTAA</left_flank>
        <right_flank>TTGAAGGAAAAATCATTAAAAAGAAAAAAAAAGACTTTGGACGAGGGTGG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCACCACCACCGCTCGCCACCGCGGCGCTCACCACTGAGGGCGCCGCGTCACACCTTCCTATACGCCCTTTACCTCCACCACAACTTTGCGCCCTGTGGCTCACTGGTTACCGTTTTGTCTTTGAATCTAGAGGTCGCGGGTTCGAACCCAACTGGTGCCATTTTCTTTTTTATTGTTTTTTAGGATGAAAGAACAGGGTTTTTCGTGTTTTTTTGCTATTTACAACCAGTTGTTCCATCAATTCCCACTTGTCAAATGGAATGTTAGTAGGTGTTCTTTAGTTTTAGTAGTGTCGTTTGTTCGCAAGTGCTAAATTTTTCTCTAGTTTTTAGTTTTCTTCTAGAACCTAATTTCGTCTAGAGTAGAGCACATATTTTGCTCTTCTTCCTCTTTTTCTCATTGAAAATATGTTTCATTCCCCATTTTTCCGCCATGCTCTAATGATTTTCCTCCTCTCTTTTCTTTTCTAATGTTTCTGAGACTTCACATAAAGTTTAAATTGAAGGAAAAATCATTAAAAAGAAAAAAAAAGACTTTGGACGAGGGTGGGAGTTGAACCCTCGATGTGAGATTGGTGGGCAAAACTGTAAACCAGTAGGCTAACGCGCATACAGGAATATAGGCCCCGGTTGTCGTATACCACACACCGGGTTTCCTTTTCGTTTCCTGGGCGCCGCCGCGCCGCGGCGACAAGCCTGTCGGCGAGCTAGTCACGCCCGAACACCTGTGGTGTACTGGTAACATCTCTGACTTCTAATCTAGCTACCCGGGTTCGATTCCTAGGTGCTTCAAATAGTTTTTTTTTATTTTTGCGAGGACACCTGTACGCTGTTTGAAACACCCCGTTCTTTTCAAAATTCCAATTTTTTACGAACTGCAAAAGATAAAAAACCCAATTGCCAAATAATACCACAAAATTTATGGGCCTATTTGTGTCTGTGCCGACACACACTTGTTTTTTACTCTTTCTTCTTTCTTTTTTCTTGATTCTTTTTGTCT</canonical>
            <polymorphic>CCACCACCACCGCTCGCCACCGCGGCGCTCACCACTGAGGGCGCCGCGTCACACCTTCCTATACGCCCTTTACCTCCACCACAACTTTGCGCCCTGTGGCTCACTGGTTACCGTTTTGTCTTTGAATCTAGAGGTCGCGGGTTCGAACCCAACTGGTGCCATTTTCTTTTTTATTGTTTTTTAGGATGAAAGAACAGGGTTTTTCGTGTTTTTTTGCTATTTACAACCAGTTGTTCCATCAATTCCCACTTGTCAAATGGAATGTTAGTAGGTGTTCTTTAGTTTTAGTAGTGTCGTTTGTTCGCAAGTGCTAAATTTTTCTCTAGTTTTTAGTTTTCTTCTAGAACCTAATTTCGTCTAGAGTAGAGCACATATTTTGCTCTTCTTCCTCTTTTTCTCATTGAAAATATGTTTCATTCCCCATTTTTCCGCCATGCTCTAATGATTTTCCTCCTCTCTTTTCTTTTCTAATGTTTCTGAGACTTCACATAAAGTTTAARTTGAAGGAAAAATCATTAAAAAGAAAAAAAAAGACTTTGGACGAGGGTGGGAGTTGAACCCTCGATGTGAGATTGGTGGGCAAAACTGTAAACCAGTAGGCTAACGCGCATACAGGAATATAGGCCCCGGTTGTCGTATACCACACACCGGGTTTCCTTTTCGTTTCCTGGGCGCCGCCGCGCCGCGGCGACAAGCCTGTCGGCGAGCTAGTCACGCCCGAACACCTGTGGTGTACTGGTAACATCTCTGACTTCTAATCTAGCTACCCGGGTTCGATTCCTAGGTGCTTCAAATAGTTTTTTTTTATTTTTGCGAGGACACCTGTACGCTGTTTGAAACACCCCGTTCTTTTCAAAATTCCAATTTTTTACGAACTGCAAAAGATAAAAAACCCAATTGCCAAATAATACCACAAAATTTATGGGCCTATTTGTGTCTGTGCCGACACACACTTGTTTTTTACTCTTTCTTCTTTCTTTTTTCTTGATTCTTTTTGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>358 240 149 84 73 36 33 21 6</canonical_bands>
                <polymorphic_bands>507 240 84 73 36 33 21 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCGTCTAGAGTAGAGCACATATT</pcr_primer_p1>
		<pcr_primer_p2>TAGCCTACTGGTTTACAGTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCGTCTAGAGTAGAGCACATATTTTGCTCTTCTTCCTCTTTTTCTCATTGAAAATATGTTTCATTCCCCATTTTTCCGCCATGCTCTAATGATTTTCCTCCTCTCTTTTCTTTTCTAATGTTTCTGAGACTTCACATAAAGTTTAAATTGAAGGAAAAATCATTAAAAAGAAAAAAAAAGACTTTGGACGAGGGTGGGAGTTGAACCCTCGATGTGAGATTGGTGGGCAAAACTGTAAACCAGTAGGCTA</canonical_amplicon>
		<polymorphic_amplicon>TTCGTCTAGAGTAGAGCACATATTTTGCTCTTCTTCCTCTTTTTCTCATTGAAAATATGTTTCATTCCCCATTTTTCCGCCATGCTCTAATGATTTTCCTCCTCTCTTTTCTTTTCTAATGTTTCTGAGACTTCACATAAAGTTTAARTTGAAGGAAAAATCATTAAAAAGAAAAAAAAAGACTTTGGACGAGGGTGGGAGTTGAACCCTCGATGTGAGATTGGTGGGCAAAACTGTAAACCAGTAGGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9165</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>281952</contig_pos>
        <strand>+</strand>
        <context>TCTGGTCCCT[C/T]ATTAGGGGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTAAAATAGGAAACAAAAAAATTTAGGAATTTTTTTGTTTCTGGTCCCT</left_flank>
        <right_flank>ATTAGGGGTCCATGGGGTTCAAAAAGCAGCTGTACAAATTTTAAAGAGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGTGGCTTGCGCTTTTGCCCATCAATCTGACCCTCCCGAGTTCGACTCCTCACTACTCTATTTTCTTTTTGCTTCTTTTTATAAGCATCCTAGAGTGTTCCCTATGTCCCTAACACAGCATGGCACGAAAGTGCAAGTGTCCAAAAAGAGAAAAGAAAGCCAATCGCGCTAAAAAGCGACTGGCTTCCGGGGGGATATGCTCCCCGAGAGACTCGTTCTGATACCCCGAGCCGGCTTTTTTTGGTTGTCTTTTTGGTATATAGAGACCCTAATTGGTTTGTACTAGGATCTTTTAGTTTGGGGGCTTAAATTTGGAATTTTTGGGAAATTTTCGAAAAATTGAAATTTCCAAAATTTCAGGTTCAAAATGTTCCAGAAAAGAGGGAAGAAGCCAATAGAGAATGACTAAAAAACGCCCACTACTCTGAGTAGAAGATCCCAAATTGAATTAAAATAGGAAACAAAAAAATTTAGGAATTTTTTTGTTTCTGGTCCCTCATTAGGGGTCCATGGGGTTCAAAAAGCAGCTGTACAAATTTTAAAGAGTCCTTGAATGTTTAAATGTTTTTTTGTAATTCCCTAACTTTTGGACTACAAATTAAAAAAATTAATTTAAAAAAATTAATTTTTAATTTTTAATTTTTGTTCCAAACATTCTGTTTCTGGTTTCAATTTTTCTGAAAAATCCCTAGTTTTTTGATTTTCAAGGCCCCTATAATTGGTCCACAATAATCCCATAAAATGTCTATAAAAATAAACGTAATCTATATGGTAATTATGTGTGTCCCAAAACCACAAAAACACGATAATTGCCGCGCCTTGTACCTGCTTGTACCCTTCTCCATCACTATATAATCTCCGGATATGTACATATGTCTTTCCATTTCTTATTTTTTTCATTTTTAGGATTTGTCTCTTTAAAAAAAATTCTCTCCCGCGCCTGCCGGGCGCCCGCGCCAGGGGCCATCACCCCTCCTTTATATCCGCCCTCGCTTTTT</canonical>
            <polymorphic>CGAGTGGCTTGCGCTTTTGCCCATCAATCTGACCCTCCCGAGTTCGACTCCTCACTACTCTATTTTCTTTTTGCTTCTTTTTATAAGCATCCTAGAGTGTTCCCTATGTCCCTAACACAGCATGGCACGAAAGTGCAAGTGTCCAAAAAGAGAAAAGAAAGCCAATCGCGCTAAAAAGCGACTGGCTTCCGGGGGGATATGCTCCCCGAGAGACTCGTTCTGATACCCCGAGCCGGCTTTTTTTGGTTGTCTTTTTGGTATATAGAGACCCTAATTGGTTTGTACTAGGATCTTTTAGTTTGGGGGCTTAAATTTGGAATTTTTGGGAAATTTTCGAAAAATTGAAATTTCCAAAATTTCAGGTTCAAAATGTTCCAGAAAAGAGGGAAGAAGCCAATAGAGAATGACTAAAAAACGCCCACTACTCTGAGTAGAAGATCCCAAATTGAATTAAAATAGGAAACAAAAAAATTTAGGAATTTTTTTGTTTCTGGTCCCTYATTAGGGGTCCATGGGGTTCAAAAAGCAGCTGTACAAATTTTAAAGAGTCCTTGAATGTTTAAATGTTTTTTTGTAATTCCCTAACTTTTGGACTACAAATTAAAAAAATTAATTTAAAAAAATTAATTTTTAATTTTTAATTTTTGTTCCAAACATTCTGTTTCTGGTTTCAATTTTTCTGAAAAATCCCTAGTTTTTTGATTTTCAAGGCCCCTATAATTGGTCCACAATAATCCCATAAAATGTCTATAAAAATAAACGTAATCTATATGGTAATTATGTGTGTCCCAAAACCACAAAAACACGATAATTGCCGCGCCTTGTACCTGCTTGTACCCTTCTCCATCACTATATAATCTCCGGATATGTACATATGTCTTTCCATTTCTTATTTTTTTCATTTTTAGGATTTGTCTCTTTAAAAAAAATTCTCTCCCGCGCCTGCCGGGCGCCCGCGCCAGGGGCCATCACCCCTCCTTTATATCCGCCCTCGCTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATTTCAGGTTCAAAATGT</pcr_primer_p1>
		<pcr_primer_p2>AGTCCAAAAGTTAGGGAATTACA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAAAATTTCAGGTTCAAAATGTTCCAGAAAAGAGGGAAGAAGCCAATAGAGAATGACTAAAAAACGCCCACTACTCTGAGTAGAAGATCCCAAATTGAATTAAAATAGGAAACAAAAAAATTTAGGAATTTTTTTGTTTCTGGTCCCTCATTAGGGGTCCATGGGGTTCAAAAAGCAGCTGTACAAATTTTAAAGAGTCCTTGAATGTTTAAATGTTTTTTTGTAATTCCCTAACTTTTGGACT</canonical_amplicon>
		<polymorphic_amplicon>CAAAATTTCAGGTTCAAAATGTTCCAGAAAAGAGGGAAGAAGCCAATAGAGAATGACTAAAAAACGCCCACTACTCTGAGTAGAAGATCCCAAATTGAATTAAAATAGGAAACAAAAAAATTTAGGAATTTTTTTGTTTCTGGTCCCTYATTAGGGGTCCATGGGGTTCAAAAAGCAGCTGTACAAATTTTAAAGAGTCCTTGAATGTTTAAATGTTTTTTTGTAATTCCCTAACTTTTGGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9166</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>281908</contig_pos>
        <strand>+</strand>
        <context>TTGAATTAAA[A/T]TAGGAAACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACTAAAAAACGCCCACTACTCTGAGTAGAAGATCCCAAATTGAATTAAA</left_flank>
        <right_flank>TAGGAAACAAAAAAATTTAGGAATTTTTTTGTTTCTGGTCCCTCATTAGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTATCCGGCTTCCACCTATTGTAACTCTGTGCCACGCGTAGCCGAGTGGCTTGCGCTTTTGCCCATCAATCTGACCCTCCCGAGTTCGACTCCTCACTACTCTATTTTCTTTTTGCTTCTTTTTATAAGCATCCTAGAGTGTTCCCTATGTCCCTAACACAGCATGGCACGAAAGTGCAAGTGTCCAAAAAGAGAAAAGAAAGCCAATCGCGCTAAAAAGCGACTGGCTTCCGGGGGGATATGCTCCCCGAGAGACTCGTTCTGATACCCCGAGCCGGCTTTTTTTGGTTGTCTTTTTGGTATATAGAGACCCTAATTGGTTTGTACTAGGATCTTTTAGTTTGGGGGCTTAAATTTGGAATTTTTGGGAAATTTTCGAAAAATTGAAATTTCCAAAATTTCAGGTTCAAAATGTTCCAGAAAAGAGGGAAGAAGCCAATAGAGAATGACTAAAAAACGCCCACTACTCTGAGTAGAAGATCCCAAATTGAATTAAAATAGGAAACAAAAAAATTTAGGAATTTTTTTGTTTCTGGTCCCTCATTAGGGGTCCATGGGGTTCAAAAAGCAGCTGTACAAATTTTAAAGAGTCCTTGAATGTTTAAATGTTTTTTTGTAATTCCCTAACTTTTGGACTACAAATTAAAAAAATTAATTTAAAAAAATTAATTTTTAATTTTTAATTTTTGTTCCAAACATTCTGTTTCTGGTTTCAATTTTTCTGAAAAATCCCTAGTTTTTTGATTTTCAAGGCCCCTATAATTGGTCCACAATAATCCCATAAAATGTCTATAAAAATAAACGTAATCTATATGGTAATTATGTGTGTCCCAAAACCACAAAAACACGATAATTGCCGCGCCTTGTACCTGCTTGTACCCTTCTCCATCACTATATAATCTCCGGATATGTACATATGTCTTTCCATTTCTTATTTTTTTCATTTTTAGGATTTGTCTCTTTAAAAAAAATTCTCTCCCGCGCCTGCCGGGCGCCCG</canonical>
            <polymorphic>TCTTATCCGGCTTCCACCTATTGTAACTCTGTGCCACGCGTAGCCGAGTGGCTTGCGCTTTTGCCCATCAATCTGACCCTCCCGAGTTCGACTCCTCACTACTCTATTTTCTTTTTGCTTCTTTTTATAAGCATCCTAGAGTGTTCCCTATGTCCCTAACACAGCATGGCACGAAAGTGCAAGTGTCCAAAAAGAGAAAAGAAAGCCAATCGCGCTAAAAAGCGACTGGCTTCCGGGGGGATATGCTCCCCGAGAGACTCGTTCTGATACCCCGAGCCGGCTTTTTTTGGTTGTCTTTTTGGTATATAGAGACCCTAATTGGTTTGTACTAGGATCTTTTAGTTTGGGGGCTTAAATTTGGAATTTTTGGGAAATTTTCGAAAAATTGAAATTTCCAAAATTTCAGGTTCAAAATGTTCCAGAAAAGAGGGAAGAAGCCAATAGAGAATGACTAAAAAACGCCCACTACTCTGAGTAGAAGATCCCAAATTGAATTAAAWTAGGAAACAAAAAAATTTAGGAATTTTTTTGTTTCTGGTCCCTCATTAGGGGTCCATGGGGTTCAAAAAGCAGCTGTACAAATTTTAAAGAGTCCTTGAATGTTTAAATGTTTTTTTGTAATTCCCTAACTTTTGGACTACAAATTAAAAAAATTAATTTAAAAAAATTAATTTTTAATTTTTAATTTTTGTTCCAAACATTCTGTTTCTGGTTTCAATTTTTCTGAAAAATCCCTAGTTTTTTGATTTTCAAGGCCCCTATAATTGGTCCACAATAATCCCATAAAATGTCTATAAAAATAAACGTAATCTATATGGTAATTATGTGTGTCCCAAAACCACAAAAACACGATAATTGCCGCGCCTTGTACCTGCTTGTACCCTTCTCCATCACTATATAATCTCCGGATATGTACATATGTCTTTCCATTTCTTATTTTTTTCATTTTTAGGATTTGTCTCTTTAAAAAAAATTCTCTCCCGCGCCTGCCGGGCGCCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAGTTTGGGGGCTTAAAT</pcr_primer_p1>
		<pcr_primer_p2>TAAAATTTGTACAGCTGCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTAGTTTGGGGGCTTAAATTTGGAATTTTTGGGAAATTTTCGAAAAATTGAAATTTCCAAAATTTCAGGTTCAAAATGTTCCAGAAAAGAGGGAAGAAGCCAATAGAGAATGACTAAAAAACGCCCACTACTCTGAGTAGAAGATCCCAAATTGAATTAAAATAGGAAACAAAAAAATTTAGGAATTTTTTTGTTTCTGGTCCCTCATTAGGGGTCCATGGGGTTCAAAAAGCAGCTGTACAAATTTTA</canonical_amplicon>
		<polymorphic_amplicon>TTTAGTTTGGGGGCTTAAATTTGGAATTTTTGGGAAATTTTCGAAAAATTGAAATTTCCAAAATTTCAGGTTCAAAATGTTCCAGAAAAGAGGGAAGAAGCCAATAGAGAATGACTAAAAAACGCCCACTACTCTGAGTAGAAGATCCCAAATTGAATTAAAWTAGGAAACAAAAAAATTTAGGAATTTTTTTGTTTCTGGTCCCTCATTAGGGGTCCATGGGGTTCAAAAAGCAGCTGTACAAATTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9167</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>281887</contig_pos>
        <strand>+</strand>
        <context>CTCTGAGTAG[A/T]AGATCCCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGGAAGAAGCCAATAGAGAATGACTAAAAAACGCCCACTACTCTGAGTAG</left_flank>
        <right_flank>AGATCCCAAATTGAATTAAAATAGGAAACAAAAAAATTTAGGAATTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACCCTCCGTTTCTTACACGTTCTTATCCGGCTTCCACCTATTGTAACTCTGTGCCACGCGTAGCCGAGTGGCTTGCGCTTTTGCCCATCAATCTGACCCTCCCGAGTTCGACTCCTCACTACTCTATTTTCTTTTTGCTTCTTTTTATAAGCATCCTAGAGTGTTCCCTATGTCCCTAACACAGCATGGCACGAAAGTGCAAGTGTCCAAAAAGAGAAAAGAAAGCCAATCGCGCTAAAAAGCGACTGGCTTCCGGGGGGATATGCTCCCCGAGAGACTCGTTCTGATACCCCGAGCCGGCTTTTTTTGGTTGTCTTTTTGGTATATAGAGACCCTAATTGGTTTGTACTAGGATCTTTTAGTTTGGGGGCTTAAATTTGGAATTTTTGGGAAATTTTCGAAAAATTGAAATTTCCAAAATTTCAGGTTCAAAATGTTCCAGAAAAGAGGGAAGAAGCCAATAGAGAATGACTAAAAAACGCCCACTACTCTGAGTAGAAGATCCCAAATTGAATTAAAATAGGAAACAAAAAAATTTAGGAATTTTTTTGTTTCTGGTCCCTCATTAGGGGTCCATGGGGTTCAAAAAGCAGCTGTACAAATTTTAAAGAGTCCTTGAATGTTTAAATGTTTTTTTGTAATTCCCTAACTTTTGGACTACAAATTAAAAAAATTAATTTAAAAAAATTAATTTTTAATTTTTAATTTTTGTTCCAAACATTCTGTTTCTGGTTTCAATTTTTCTGAAAAATCCCTAGTTTTTTGATTTTCAAGGCCCCTATAATTGGTCCACAATAATCCCATAAAATGTCTATAAAAATAAACGTAATCTATATGGTAATTATGTGTGTCCCAAAACCACAAAAACACGATAATTGCCGCGCCTTGTACCTGCTTGTACCCTTCTCCATCACTATATAATCTCCGGATATGTACATATGTCTTTCCATTTCTTATTTTTTTCATTTTTAGGATTTGTCTCTTTAAAAAAAATTCTCT</canonical>
            <polymorphic>CACCCTCCGTTTCTTACACGTTCTTATCCGGCTTCCACCTATTGTAACTCTGTGCCACGCGTAGCCGAGTGGCTTGCGCTTTTGCCCATCAATCTGACCCTCCCGAGTTCGACTCCTCACTACTCTATTTTCTTTTTGCTTCTTTTTATAAGCATCCTAGAGTGTTCCCTATGTCCCTAACACAGCATGGCACGAAAGTGCAAGTGTCCAAAAAGAGAAAAGAAAGCCAATCGCGCTAAAAAGCGACTGGCTTCCGGGGGGATATGCTCCCCGAGAGACTCGTTCTGATACCCCGAGCCGGCTTTTTTTGGTTGTCTTTTTGGTATATAGAGACCCTAATTGGTTTGTACTAGGATCTTTTAGTTTGGGGGCTTAAATTTGGAATTTTTGGGAAATTTTCGAAAAATTGAAATTTCCAAAATTTCAGGTTCAAAATGTTCCAGAAAAGAGGGAAGAAGCCAATAGAGAATGACTAAAAAACGCCCACTACTCTGAGTAGWAGATCCCAAATTGAATTAAAATAGGAAACAAAAAAATTTAGGAATTTTTTTGTTTCTGGTCCCTCATTAGGGGTCCATGGGGTTCAAAAAGCAGCTGTACAAATTTTAAAGAGTCCTTGAATGTTTAAATGTTTTTTTGTAATTCCCTAACTTTTGGACTACAAATTAAAAAAATTAATTTAAAAAAATTAATTTTTAATTTTTAATTTTTGTTCCAAACATTCTGTTTCTGGTTTCAATTTTTCTGAAAAATCCCTAGTTTTTTGATTTTCAAGGCCCCTATAATTGGTCCACAATAATCCCATAAAATGTCTATAAAAATAAACGTAATCTATATGGTAATTATGTGTGTCCCAAAACCACAAAAACACGATAATTGCCGCGCCTTGTACCTGCTTGTACCCTTCTCCATCACTATATAATCTCCGGATATGTACATATGTCTTTCCATTTCTTATTTTTTTCATTTTTAGGATTTGTCTCTTTAAAAAAAATTCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAGTTTGGGGGCTTAAAT</pcr_primer_p1>
		<pcr_primer_p2>TAAAATTTGTACAGCTGCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTAGTTTGGGGGCTTAAATTTGGAATTTTTGGGAAATTTTCGAAAAATTGAAATTTCCAAAATTTCAGGTTCAAAATGTTCCAGAAAAGAGGGAAGAAGCCAATAGAGAATGACTAAAAAACGCCCACTACTCTGAGTAGAAGATCCCAAATTGAATTAAAATAGGAAACAAAAAAATTTAGGAATTTTTTTGTTTCTGGTCCCTCATTAGGGGTCCATGGGGTTCAAAAAGCAGCTGTACAAATTTTA</canonical_amplicon>
		<polymorphic_amplicon>TTTAGTTTGGGGGCTTAAATTTGGAATTTTTGGGAAATTTTCGAAAAATTGAAATTTCCAAAATTTCAGGTTCAAAATGTTCCAGAAAAGAGGGAAGAAGCCAATAGAGAATGACTAAAAAACGCCCACTACTCTGAGTAGWAGATCCCAAATTGAATTAAAATAGGAAACAAAAAAATTTAGGAATTTTTTTGTTTCTGGTCCCTCATTAGGGGTCCATGGGGTTCAAAAAGCAGCTGTACAAATTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9170</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>410763</contig_pos>
        <strand></strand>
        <context>TGTCTTCGTT[G/A]GTCGTCAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CATTTATTTTTCTATAAAATAAGAAAAAATCATTTGTTAATGTCTTCGTT</left_flank>
        <right_flank>GTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTATGAACATTTTCTTTTGTCAGGAAATCTGGTTTGGCGCCCCATTGTCCACCCCGTCATCCTCTCTGAATTCTTTAACAAGATGTGACGTGACAAAGACTTCAAGAAGAAAACGAAGAACTTCTGATGATAATGGAGATGTCATCGAACTGGATGATTTTTTCCAAAATTAACTACTGTGCAATTTGTGAAATTTTTAATTTTTCTGAATATATAAAGATTCCAGAAACATTTTGAACAGCTTTCACTTCGTTAAAACAATTTCCTGCCACTTTCCGGTCATTTTGATACCCAGATTGCCTATATTCCATAAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCTCGAAATCTCGAAATGTGGGCAATATGGGTATCAAAATAACGGGAATTCAATGAGTAACAATTCTAACGACATGAAAAGTTGAAAAAGTAAGAAATTCCATTTATTTTTCTATAAAATAAGAAAAAATCATTTGTTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGT</canonical>
            <polymorphic>AAATTATGAACATTTTCTTTTGTCAGGAAATCTGGTTTGGCGCCCCATTGTCCACCCCGTCATCCTCTCTGAATTCTTTAACAAGATGTGACGTGACAAAGACTTCAAGAAGAAAACGAAGAACTTCTGATGATAATGGAGATGTCATCGAACTGGATGATTTTTTCCAAAATTAACTACTGTGCAATTTGTGAAATTTTTAATTTTTCTGAATATATAAAGATTCCAGAAACATTTTGAACAGCTTTCACTTCGTTAAAACAATTTCCTGCCACTTTCCGGTCATTTTGATACCCAGATTGCCTATATTCCATAAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCTCGAAATCTCGAAATGTGGGCAATATGGGTATCAAAATAACGGGAATTCAATGAGTAACAATTCTAACGACATGAAAAGTTGAAAAAGTAAGAAATTCCATTTATTTTTCTATAAAATAAGAAAAAATCATTTGTTAATGTCTTCGTTRGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCGAACTGGATGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CGTTTAAGGTATTTCTTGAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>507</pcr_amplicon_size>
		<canonical_amplicon>CATCGAACTGGATGATTTTTTCCAAAATTAACTACTGTGCAATTTGTGAAATTTTTAATTTTTCTGAATATATAAAGATTCCAGAAACATTTTGAACAGCTTTCACTTCGTTAAAACAATTTCCTGCCACTTTCCGGTCATTTTGATACCCAGATTGCCTATATTCCATAAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCTCGAAATCTCGAAATGTGGGCAATATGGGTATCAAAATAACGGGAATTCAATGAGTAACAATTCTAACGACATGAAAAGTTGAAAAAGTAAGAAATTCCATTTATTTTTCTATAAAATAAGAAAAAATCATTTGTTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACG</canonical_amplicon>
		<polymorphic_amplicon>CATCGAACTGGATGATTTTTTCCAAAATTAACTACTGTGCAATTTGTGAAATTTTTAATTTTTCTGAATATATAAAGATTCCAGAAACATTTTGAACAGCTTTCACTTCGTTAAAACAATTTCCTGCCACTTTCCGGTCATTTTGATACCCAGATTGCCTATATTCCATAAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCTCGAAATCTCGAAATGTGGGCAATATGGGTATCAAAATAACGGGAATTCAATGAGTAACAATTCTAACGACATGAAAAGTTGAAAAAGTAAGAAATTCCATTTATTTTTCTATAAAATAAGAAAAAATCATTTGTTAATGTCTTCGTTRGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9171</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>413664</contig_pos>
        <strand></strand>
        <context>AGGGAATTCA[C/A]GAAGACAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GATTATCGATTGGTCCCAAAATTCGATCCGCCGAAGAAAAAGGGAATTCA</left_flank>
        <right_flank>GAAGACAAAAAATTGGAAAATCAAAAGGGAAAAAACAAGAAAAATGATGG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTGAGCTCAATTATCTCAATTTCTAAAAAAGTAATTATAAAGTAGTTAACTGATACAATGTATATCATAACATTTTACGCATTTCATTAGTTTTCAAATTTTAGTTAGCGTTTATGGTTTTTGAGATATGCGCCTTTAAATTTGGAGGCGCCCCTCGATTCTCCGTGAAGGATGCCCATTGTTAACTTTGAGGTTGATTATCTCGGTTACTGAAAGAGATATCGGAATTTTGTTAACTGATAAAATGTTTATTATAATATCAGCAATAATTTATTAGTTAACTACTTTTTGATATCTCTGATAGCAACCGAGATAACGGAGCTGAAAGTTGGGGTGACGATTTTTTGTAAGATTTTTTTTGTTGATATTTTAAAATTTCAAATTTTCAGGACTTTCATCCAATCTGGAAATCTAAGAAACCGGACGGCTGTGCCAATTCGATTTCCAGATTATCGATTGGTCCCAAAATTCGATCCGCCGAAGAAAAAGGGAATTCACGAAGACAAAAAATTGGAAAATCAAAAGGGAAAAAACAAGAAAAATGATGGAAAAAAGATGCCGGAAAAGAAGACGTCGGACGACGGCAAAAAAGGTTTTTTTCAGAATTTTAAAATCCAAATTCTGAACAAATTTTTTTCAGAAGACGTCAACGGCGTCGGAGAATCCTCTGAAGAAGTAATTCCTCAAGATCTCTCGATATCGAGGAAAAGGGTTTTTAAAAAATCATCAATCAGTTTTTCATCCCTAATTTTTTTGGAAGTTTTGATTTTTGAAAAAAAAAATCAAAAATTCCAAAATAAATGAAGGAATATTATTGTAACTTTTTATTTGGGTGGAATAAATGAATTTATTTCCTTGTTGTTGGAATTGTTACCCATCGAATTCCCGTCATTTTGATACCCATATTGCCTATATTTCCAAATTTTGTGAATTCTGAATTCAGAAGACGTCAAAATTCGAATCTCACCGAATAGGGTCGATATGGGTACCAAAATGAC</canonical>
            <polymorphic>CTTTGAGCTCAATTATCTCAATTTCTAAAAAAGTAATTATAAAGTAGTTAACTGATACAATGTATATCATAACATTTTACGCATTTCATTAGTTTTCAAATTTTAGTTAGCGTTTATGGTTTTTGAGATATGCGCCTTTAAATTTGGAGGCGCCCCTCGATTCTCCGTGAAGGATGCCCATTGTTAACTTTGAGGTTGATTATCTCGGTTACTGAAAGAGATATCGGAATTTTGTTAACTGATAAAATGTTTATTATAATATCAGCAATAATTTATTAGTTAACTACTTTTTGATATCTCTGATAGCAACCGAGATAACGGAGCTGAAAGTTGGGGTGACGATTTTTTGTAAGATTTTTTTTGTTGATATTTTAAAATTTCAAATTTTCAGGACTTTCATCCAATCTGGAAATCTAAGAAACCGGACGGCTGTGCCAATTCGATTTCCAGATTATCGATTGGTCCCAAAATTCGATCCGCCGAAGAAAAAGGGAATTCAMGAAGACAAAAAATTGGAAAATCAAAAGGGAAAAAACAAGAAAAATGATGGAAAAAAGATGCCGGAAAAGAAGACGTCGGACGACGGCAAAAAAGGTTTTTTTCAGAATTTTAAAATCCAAATTCTGAACAAATTTTTTTCAGAAGACGTCAACGGCGTCGGAGAATCCTCTGAAGAAGTAATTCCTCAAGATCTCTCGATATCGAGGAAAAGGGTTTTTAAAAAATCATCAATCAGTTTTTCATCCCTAATTTTTTTGGAAGTTTTGATTTTTGAAAAAAAAAATCAAAAATTCCAAAATAAATGAAGGAATATTATTGTAACTTTTTATTTGGGTGGAATAAATGAATTTATTTCCTTGTTGTTGGAATTGTTACCCATCGAATTCCCGTCATTTTGATACCCATATTGCCTATATTTCCAAATTTTGTGAATTCTGAATTCAGAAGACGTCAAAATTCGAATCTCACCGAATAGGGTCGATATGGGTACCAAAATGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>338 169 169 96 94 65 37 32</canonical_bands>
                <polymorphic_bands>403 169 169 96 94 37 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTTCATCCAATCTGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTGTTCAGAATTTGGATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ACTTTCATCCAATCTGGAAATCTAAGAAACCGGACGGCTGTGCCAATTCGATTTCCAGATTATCGATTGGTCCCAAAATTCGATCCGCCGAAGAAAAAGGGAATTCACGAAGACAAAAAATTGGAAAATCAAAAGGGAAAAAACAAGAAAAATGATGGAAAAAAGATGCCGGAAAAGAAGACGTCGGACGACGGCAAAAAAGGTTTTTTTCAGAATTTTAAAATCCAAATTCTGAACAAAT</canonical_amplicon>
		<polymorphic_amplicon>ACTTTCATCCAATCTGGAAATCTAAGAAACCGGACGGCTGTGCCAATTCGATTTCCAGATTATCGATTGGTCCCAAAATTCGATCCGCCGAAGAAAAAGGGAATTCAMGAAGACAAAAAATTGGAAAATCAAAAGGGAAAAAACAAGAAAAATGATGGAAAAAAGATGCCGGAAAAGAAGACGTCGGACGACGGCAAAAAAGGTTTTTTTCAGAATTTTAAAATCCAAATTCTGAACAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9172</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>413584</contig_pos>
        <strand>+</strand>
        <context>AAATCTAAGA[A/G]ACCGGACGGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTAAAATTTCAAATTTTCAGGACTTTCATCCAATCTGGAAATCTAAGA</left_flank>
        <right_flank>ACCGGACGGCTGTGCCAATTCGATTTCCAGATTATCGATTGGTCCCAAAA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTGGCCTGGCGCGAAATTCAAAAAGTTTAAAAATTTCGATTTTTCGAATTTTTTCCGAAAAAATTCCATACTTGCACTTTGAGCTCAATTATCTCAATTTCTAAAAAAGTAATTATAAAGTAGTTAACTGATACAATGTATATCATAACATTTTACGCATTTCATTAGTTTTCAAATTTTAGTTAGCGTTTATGGTTTTTGAGATATGCGCCTTTAAATTTGGAGGCGCCCCTCGATTCTCCGTGAAGGATGCCCATTGTTAACTTTGAGGTTGATTATCTCGGTTACTGAAAGAGATATCGGAATTTTGTTAACTGATAAAATGTTTATTATAATATCAGCAATAATTTATTAGTTAACTACTTTTTGATATCTCTGATAGCAACCGAGATAACGGAGCTGAAAGTTGGGGTGACGATTTTTTGTAAGATTTTTTTTGTTGATATTTTAAAATTTCAAATTTTCAGGACTTTCATCCAATCTGGAAATCTAAGAAACCGGACGGCTGTGCCAATTCGATTTCCAGATTATCGATTGGTCCCAAAATTCGATCCGCCGAAGAAAAAGGGAATTCACGAAGACAAAAAATTGGAAAATCAAAAGGGAAAAAACAAGAAAAATGATGGAAAAAAGATGCCGGAAAAGAAGACGTCGGACGACGGCAAAAAAGGTTTTTTTCAGAATTTTAAAATCCAAATTCTGAACAAATTTTTTTCAGAAGACGTCAACGGCGTCGGAGAATCCTCTGAAGAAGTAATTCCTCAAGATCTCTCGATATCGAGGAAAAGGGTTTTTAAAAAATCATCAATCAGTTTTTCATCCCTAATTTTTTTGGAAGTTTTGATTTTTGAAAAAAAAAATCAAAAATTCCAAAATAAATGAAGGAATATTATTGTAACTTTTTATTTGGGTGGAATAAATGAATTTATTTCCTTGTTGTTGGAATTGTTACCCATCGAATTCCCGTCATTTTGATACCCATATTGCCTATATTTC</canonical>
            <polymorphic>AAATTTGGCCTGGCGCGAAATTCAAAAAGTTTAAAAATTTCGATTTTTCGAATTTTTTCCGAAAAAATTCCATACTTGCACTTTGAGCTCAATTATCTCAATTTCTAAAAAAGTAATTATAAAGTAGTTAACTGATACAATGTATATCATAACATTTTACGCATTTCATTAGTTTTCAAATTTTAGTTAGCGTTTATGGTTTTTGAGATATGCGCCTTTAAATTTGGAGGCGCCCCTCGATTCTCCGTGAAGGATGCCCATTGTTAACTTTGAGGTTGATTATCTCGGTTACTGAAAGAGATATCGGAATTTTGTTAACTGATAAAATGTTTATTATAATATCAGCAATAATTTATTAGTTAACTACTTTTTGATATCTCTGATAGCAACCGAGATAACGGAGCTGAAAGTTGGGGTGACGATTTTTTGTAAGATTTTTTTTGTTGATATTTTAAAATTTCAAATTTTCAGGACTTTCATCCAATCTGGAAATCTAAGARACCGGACGGCTGTGCCAATTCGATTTCCAGATTATCGATTGGTCCCAAAATTCGATCCGCCGAAGAAAAAGGGAATTCACGAAGACAAAAAATTGGAAAATCAAAAGGGAAAAAACAAGAAAAATGATGGAAAAAAGATGCCGGAAAAGAAGACGTCGGACGACGGCAAAAAAGGTTTTTTTCAGAATTTTAAAATCCAAATTCTGAACAAATTTTTTTCAGAAGACGTCAACGGCGTCGGAGAATCCTCTGAAGAAGTAATTCCTCAAGATCTCTCGATATCGAGGAAAAGGGTTTTTAAAAAATCATCAATCAGTTTTTCATCCCTAATTTTTTTGGAAGTTTTGATTTTTGAAAAAAAAAATCAAAAATTCCAAAATAAATGAAGGAATATTATTGTAACTTTTTATTTGGGTGGAATAAATGAATTTATTTCCTTGTTGTTGGAATTGTTACCCATCGAATTCCCGTCATTTTGATACCCATATTGCCTATATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCGATTTTTCGAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTGATTTTCCAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>571</pcr_amplicon_size>
		<canonical_amplicon>TTTCGATTTTTCGAATTTTTTCCGAAAAAATTCCATACTTGCACTTTGAGCTCAATTATCTCAATTTCTAAAAAAGTAATTATAAAGTAGTTAACTGATACAATGTATATCATAACATTTTACGCATTTCATTAGTTTTCAAATTTTAGTTAGCGTTTATGGTTTTTGAGATATGCGCCTTTAAATTTGGAGGCGCCCCTCGATTCTCCGTGAAGGATGCCCATTGTTAACTTTGAGGTTGATTATCTCGGTTACTGAAAGAGATATCGGAATTTTGTTAACTGATAAAATGTTTATTATAATATCAGCAATAATTTATTAGTTAACTACTTTTTGATATCTCTGATAGCAACCGAGATAACGGAGCTGAAAGTTGGGGTGACGATTTTTTGTAAGATTTTTTTTGTTGATATTTTAAAATTTCAAATTTTCAGGACTTTCATCCAATCTGGAAATCTAAGAAACCGGACGGCTGTGCCAATTCGATTTCCAGATTATCGATTGGTCCCAAAATTCGATCCGCCGAAGAAAAAGGGAATTCACGAAGACAAAAAATTGGAAAATCAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>TTTCGATTTTTCGAATTTTTTCCGAAAAAATTCCATACTTGCACTTTGAGCTCAATTATCTCAATTTCTAAAAAAGTAATTATAAAGTAGTTAACTGATACAATGTATATCATAACATTTTACGCATTTCATTAGTTTTCAAATTTTAGTTAGCGTTTATGGTTTTTGAGATATGCGCCTTTAAATTTGGAGGCGCCCCTCGATTCTCCGTGAAGGATGCCCATTGTTAACTTTGAGGTTGATTATCTCGGTTACTGAAAGAGATATCGGAATTTTGTTAACTGATAAAATGTTTATTATAATATCAGCAATAATTTATTAGTTAACTACTTTTTGATATCTCTGATAGCAACCGAGATAACGGAGCTGAAAGTTGGGGTGACGATTTTTTGTAAGATTTTTTTTGTTGATATTTTAAAATTTCAAATTTTCAGGACTTTCATCCAATCTGGAAATCTAAGARACCGGACGGCTGTGCCAATTCGATTTCCAGATTATCGATTGGTCCCAAAATTCGATCCGCCGAAGAAAAAGGGAATTCACGAAGACAAAAAATTGGAAAATCAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9175</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>415498</contig_pos>
        <strand></strand>
        <context>tattttttcy[A/G]aaaatcTGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCT</left_flank>
        <right_flank>AAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTACTATTAGCAGTCATGTAGTCTTTTTTACGCCTACTGTACCTTCGTTCATCGACTAGATACAGTAACCCAAATAACATCATTTTGTAGCTCTTGAGTTGTTCTATTATATCCATTTTAGTTGGTCCAGAAGTATTAAATTTGAAGGAAGTTATGGTCCGTTTTAGGACCTGCTAGAGGTGCTGGACAAATTGAAAATCTACAGTAGTTTTCTCGAATGACGTCATAGAATGAGCAATGTCACACCCATCTGTGAGTAGCTGGTGTTGCCCACAAAATAGCACTATTAAAGGACGCATAGGTCATGAGAACTAGATAGAGAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTCTACTCAAATGACGTCATATGAGCAATATCACACCCATATGTGAGTAGCTGGTATTGCCCACTGAATAGGACTATTGGATGAGGCATGTCGAAACAAAAAAGCCACTT</canonical>
            <polymorphic>TTACTATTAGCAGTCATGTAGTCTTTTTTACGCCTACTGTACCTTCGTTCATCGACTAGATACAGTAACCCAAATAACATCATTTTGTAGCTCTTGAGTTGTTCTATTATATCCATTTTAGTTGGTCCAGAAGTATTAAATTTGAAGGAAGTTATGGTCCGTTTTAGGACCTGCTAGAGGTGCTGGACAAATTGAAAATCTACAGTAGTTTTCTCGAATGACGTCATAGAATGAGCAATGTCACACCCATCTGTGAGTAGCTGGTGTTGCCCACAAAATAGCACTATTAAAGGACGCATAGGTCATGAGAACTAGATAGAGAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTRAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTCTACTCAAATGACGTCATATGAGCAATATCACACCCATATGTGAGTAGCTGGTATTGCCCACTGAATAGGACTATTGGATGAGGCATGTCGAAACAAAAAAGCCACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGACGCAGACAACAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TAGATGAAATGTGAGAGTTTGTG</pcr_primer_p2>
		<pcr_amplicon_size>561</pcr_amplicon_size>
		<canonical_amplicon>GAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTA</canonical_amplicon>
		<polymorphic_amplicon>GAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTRAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9176</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>415497</contig_pos>
        <strand></strand>
        <context>ytattttttc[T/C]raaaatcTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTC</left_flank>
        <right_flank>AAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTACTATTAGCAGTCATGTAGTCTTTTTTACGCCTACTGTACCTTCGTTCATCGACTAGATACAGTAACCCAAATAACATCATTTTGTAGCTCTTGAGTTGTTCTATTATATCCATTTTAGTTGGTCCAGAAGTATTAAATTTGAAGGAAGTTATGGTCCGTTTTAGGACCTGCTAGAGGTGCTGGACAAATTGAAAATCTACAGTAGTTTTCTCGAATGACGTCATAGAATGAGCAATGTCACACCCATCTGTGAGTAGCTGGTGTTGCCCACAAAATAGCACTATTAAAGGACGCATAGGTCATGAGAACTAGATAGAGAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTCTACTCAAATGACGTCATATGAGCAATATCACACCCATATGTGAGTAGCTGGTATTGCCCACTGAATAGGACTATTGGATGAGGCATGTCGAAACAAAAAAGCCACT</canonical>
            <polymorphic>CTTACTATTAGCAGTCATGTAGTCTTTTTTACGCCTACTGTACCTTCGTTCATCGACTAGATACAGTAACCCAAATAACATCATTTTGTAGCTCTTGAGTTGTTCTATTATATCCATTTTAGTTGGTCCAGAAGTATTAAATTTGAAGGAAGTTATGGTCCGTTTTAGGACCTGCTAGAGGTGCTGGACAAATTGAAAATCTACAGTAGTTTTCTCGAATGACGTCATAGAATGAGCAATGTCACACCCATCTGTGAGTAGCTGGTGTTGCCCACAAAATAGCACTATTAAAGGACGCATAGGTCATGAGAACTAGATAGAGAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCYAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTCTACTCAAATGACGTCATATGAGCAATATCACACCCATATGTGAGTAGCTGGTATTGCCCACTGAATAGGACTATTGGATGAGGCATGTCGAAACAAAAAAGCCACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGACGCAGACAACAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TAGATGAAATGTGAGAGTTTGTG</pcr_primer_p2>
		<pcr_amplicon_size>561</pcr_amplicon_size>
		<canonical_amplicon>GAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTA</canonical_amplicon>
		<polymorphic_amplicon>GAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCYAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9177</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>415487</contig_pos>
        <strand></strand>
        <context>aagttcctac[T/C]tattttttcy</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTAC</left_flank>
        <right_flank>TATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTCTAAGACTTACTATTAGCAGTCATGTAGTCTTTTTTACGCCTACTGTACCTTCGTTCATCGACTAGATACAGTAACCCAAATAACATCATTTTGTAGCTCTTGAGTTGTTCTATTATATCCATTTTAGTTGGTCCAGAAGTATTAAATTTGAAGGAAGTTATGGTCCGTTTTAGGACCTGCTAGAGGTGCTGGACAAATTGAAAATCTACAGTAGTTTTCTCGAATGACGTCATAGAATGAGCAATGTCACACCCATCTGTGAGTAGCTGGTGTTGCCCACAAAATAGCACTATTAAAGGACGCATAGGTCATGAGAACTAGATAGAGAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTCTACTCAAATGACGTCATATGAGCAATATCACACCCATATGTGAGTAGCTGGTATTGCCCACTGAATAGGACTATTGGATGAGGCATGTCGAAACAA</canonical>
            <polymorphic>TATTCTAAGACTTACTATTAGCAGTCATGTAGTCTTTTTTACGCCTACTGTACCTTCGTTCATCGACTAGATACAGTAACCCAAATAACATCATTTTGTAGCTCTTGAGTTGTTCTATTATATCCATTTTAGTTGGTCCAGAAGTATTAAATTTGAAGGAAGTTATGGTCCGTTTTAGGACCTGCTAGAGGTGCTGGACAAATTGAAAATCTACAGTAGTTTTCTCGAATGACGTCATAGAATGAGCAATGTCACACCCATCTGTGAGTAGCTGGTGTTGCCCACAAAATAGCACTATTAAAGGACGCATAGGTCATGAGAACTAGATAGAGAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACYTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTCTACTCAAATGACGTCATATGAGCAATATCACACCCATATGTGAGTAGCTGGTATTGCCCACTGAATAGGACTATTGGATGAGGCATGTCGAAACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGACGCAGACAACAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TAGATGAAATGTGAGAGTTTGTG</pcr_primer_p2>
		<pcr_amplicon_size>561</pcr_amplicon_size>
		<canonical_amplicon>GAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTA</canonical_amplicon>
		<polymorphic_amplicon>GAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACYTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9178</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>415460</contig_pos>
        <strand></strand>
        <context>raagaatcct[G/A]atgaatggat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCT</left_flank>
        <right_flank>ATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTGTGTTTCCAAAGCTTTCGCCCCCTATTCTAAGACTTACTATTAGCAGTCATGTAGTCTTTTTTACGCCTACTGTACCTTCGTTCATCGACTAGATACAGTAACCCAAATAACATCATTTTGTAGCTCTTGAGTTGTTCTATTATATCCATTTTAGTTGGTCCAGAAGTATTAAATTTGAAGGAAGTTATGGTCCGTTTTAGGACCTGCTAGAGGTGCTGGACAAATTGAAAATCTACAGTAGTTTTCTCGAATGACGTCATAGAATGAGCAATGTCACACCCATCTGTGAGTAGCTGGTGTTGCCCACAAAATAGCACTATTAAAGGACGCATAGGTCATGAGAACTAGATAGAGAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTCTACTCAAATGACGTCATATGAGCAATATCACACCCATATGTGAGTAGCTGGTATTGCCCACTGAATAGG</canonical>
            <polymorphic>GATTGTGTTTCCAAAGCTTTCGCCCCCTATTCTAAGACTTACTATTAGCAGTCATGTAGTCTTTTTTACGCCTACTGTACCTTCGTTCATCGACTAGATACAGTAACCCAAATAACATCATTTTGTAGCTCTTGAGTTGTTCTATTATATCCATTTTAGTTGGTCCAGAAGTATTAAATTTGAAGGAAGTTATGGTCCGTTTTAGGACCTGCTAGAGGTGCTGGACAAATTGAAAATCTACAGTAGTTTTCTCGAATGACGTCATAGAATGAGCAATGTCACACCCATCTGTGAGTAGCTGGTGTTGCCCACAAAATAGCACTATTAAAGGACGCATAGGTCATGAGAACTAGATAGAGAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTRATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTCTACTCAAATGACGTCATATGAGCAATATCACACCCATATGTGAGTAGCTGGTATTGCCCACTGAATAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>263 169 145 131 91 86 56 34 15 10</canonical_bands>
                <polymorphic_bands>263 169 145 131 91 86 56 34 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGACGCAGACAACAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TAGATGAAATGTGAGAGTTTGTG</pcr_primer_p2>
		<pcr_amplicon_size>561</pcr_amplicon_size>
		<canonical_amplicon>GAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTA</canonical_amplicon>
		<polymorphic_amplicon>GAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTRATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9179</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>415450</contig_pos>
        <strand></strand>
        <context>gaactttyya[G/A]aagaatcctr</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCA</left_flank>
        <right_flank>AAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTACTGTAGATTGTGTTTCCAAAGCTTTCGCCCCCTATTCTAAGACTTACTATTAGCAGTCATGTAGTCTTTTTTACGCCTACTGTACCTTCGTTCATCGACTAGATACAGTAACCCAAATAACATCATTTTGTAGCTCTTGAGTTGTTCTATTATATCCATTTTAGTTGGTCCAGAAGTATTAAATTTGAAGGAAGTTATGGTCCGTTTTAGGACCTGCTAGAGGTGCTGGACAAATTGAAAATCTACAGTAGTTTTCTCGAATGACGTCATAGAATGAGCAATGTCACACCCATCTGTGAGTAGCTGGTGTTGCCCACAAAATAGCACTATTAAAGGACGCATAGGTCATGAGAACTAGATAGAGAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTCTACTCAAATGACGTCATATGAGCAATATCACACCCATATGTGAGTAGCTGGTATTGCCC</canonical>
            <polymorphic>TCTTACTGTAGATTGTGTTTCCAAAGCTTTCGCCCCCTATTCTAAGACTTACTATTAGCAGTCATGTAGTCTTTTTTACGCCTACTGTACCTTCGTTCATCGACTAGATACAGTAACCCAAATAACATCATTTTGTAGCTCTTGAGTTGTTCTATTATATCCATTTTAGTTGGTCCAGAAGTATTAAATTTGAAGGAAGTTATGGTCCGTTTTAGGACCTGCTAGAGGTGCTGGACAAATTGAAAATCTACAGTAGTTTTCTCGAATGACGTCATAGAATGAGCAATGTCACACCCATCTGTGAGTAGCTGGTGTTGCCCACAAAATAGCACTATTAAAGGACGCATAGGTCATGAGAACTAGATAGAGAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCARAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTCTACTCAAATGACGTCATATGAGCAATATCACACCCATATGTGAGTAGCTGGTATTGCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>263 159 145 141 91 86 56 34 15 10</canonical_bands>
                <polymorphic_bands>263 159 155 141 91 86 56 34 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGACGCAGACAACAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TAGATGAAATGTGAGAGTTTGTG</pcr_primer_p2>
		<pcr_amplicon_size>561</pcr_amplicon_size>
		<canonical_amplicon>GAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTA</canonical_amplicon>
		<polymorphic_amplicon>GAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCARAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9180</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>415448</contig_pos>
        <strand></strand>
        <context>cggaacttty[C/T]araagaatcc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTC</left_flank>
        <right_flank>AGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCTTACTGTAGATTGTGTTTCCAAAGCTTTCGCCCCCTATTCTAAGACTTACTATTAGCAGTCATGTAGTCTTTTTTACGCCTACTGTACCTTCGTTCATCGACTAGATACAGTAACCCAAATAACATCATTTTGTAGCTCTTGAGTTGTTCTATTATATCCATTTTAGTTGGTCCAGAAGTATTAAATTTGAAGGAAGTTATGGTCCGTTTTAGGACCTGCTAGAGGTGCTGGACAAATTGAAAATCTACAGTAGTTTTCTCGAATGACGTCATAGAATGAGCAATGTCACACCCATCTGTGAGTAGCTGGTGTTGCCCACAAAATAGCACTATTAAAGGACGCATAGGTCATGAGAACTAGATAGAGAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTCTACTCAAATGACGTCATATGAGCAATATCACACCCATATGTGAGTAGCTGGTATTGC</canonical>
            <polymorphic>CATCTTACTGTAGATTGTGTTTCCAAAGCTTTCGCCCCCTATTCTAAGACTTACTATTAGCAGTCATGTAGTCTTTTTTACGCCTACTGTACCTTCGTTCATCGACTAGATACAGTAACCCAAATAACATCATTTTGTAGCTCTTGAGTTGTTCTATTATATCCATTTTAGTTGGTCCAGAAGTATTAAATTTGAAGGAAGTTATGGTCCGTTTTAGGACCTGCTAGAGGTGCTGGACAAATTGAAAATCTACAGTAGTTTTCTCGAATGACGTCATAGAATGAGCAATGTCACACCCATCTGTGAGTAGCTGGTGTTGCCCACAAAATAGCACTATTAAAGGACGCATAGGTCATGAGAACTAGATAGAGAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCYAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTCTACTCAAATGACGTCATATGAGCAATATCACACCCATATGTGAGTAGCTGGTATTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGACGCAGACAACAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TAGATGAAATGTGAGAGTTTGTG</pcr_primer_p2>
		<pcr_amplicon_size>561</pcr_amplicon_size>
		<canonical_amplicon>GAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTA</canonical_amplicon>
		<polymorphic_amplicon>GAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCYAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9181</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>415447</contig_pos>
        <strand></strand>
        <context>tcggaacttt[C/T]yaraagaatc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTT</left_flank>
        <right_flank>CAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATCTTACTGTAGATTGTGTTTCCAAAGCTTTCGCCCCCTATTCTAAGACTTACTATTAGCAGTCATGTAGTCTTTTTTACGCCTACTGTACCTTCGTTCATCGACTAGATACAGTAACCCAAATAACATCATTTTGTAGCTCTTGAGTTGTTCTATTATATCCATTTTAGTTGGTCCAGAAGTATTAAATTTGAAGGAAGTTATGGTCCGTTTTAGGACCTGCTAGAGGTGCTGGACAAATTGAAAATCTACAGTAGTTTTCTCGAATGACGTCATAGAATGAGCAATGTCACACCCATCTGTGAGTAGCTGGTGTTGCCCACAAAATAGCACTATTAAAGGACGCATAGGTCATGAGAACTAGATAGAGAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTCTACTCAAATGACGTCATATGAGCAATATCACACCCATATGTGAGTAGCTGGTATTG</canonical>
            <polymorphic>TCATCTTACTGTAGATTGTGTTTCCAAAGCTTTCGCCCCCTATTCTAAGACTTACTATTAGCAGTCATGTAGTCTTTTTTACGCCTACTGTACCTTCGTTCATCGACTAGATACAGTAACCCAAATAACATCATTTTGTAGCTCTTGAGTTGTTCTATTATATCCATTTTAGTTGGTCCAGAAGTATTAAATTTGAAGGAAGTTATGGTCCGTTTTAGGACCTGCTAGAGGTGCTGGACAAATTGAAAATCTACAGTAGTTTTCTCGAATGACGTCATAGAATGAGCAATGTCACACCCATCTGTGAGTAGCTGGTGTTGCCCACAAAATAGCACTATTAAAGGACGCATAGGTCATGAGAACTAGATAGAGAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTYCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTCTACTCAAATGACGTCATATGAGCAATATCACACCCATATGTGAGTAGCTGGTATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>263 156 145 144 91 86 56 34 15 10</canonical_bands>
                <polymorphic_bands>263 156 155 144 91 86 56 34 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGACGCAGACAACAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TAGATGAAATGTGAGAGTTTGTG</pcr_primer_p2>
		<pcr_amplicon_size>561</pcr_amplicon_size>
		<canonical_amplicon>GAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTA</canonical_amplicon>
		<polymorphic_amplicon>GAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTYCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9182</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>415369</contig_pos>
        <strand></strand>
        <context>AACGCGCCAC[T/C]AACAGCCCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCAC</left_flank>
        <right_flank>AACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTTTTTTTGGGCATTACCGTATGAACCATAAGAATTTTGTACCATTAGAATTAAAAAAAATCTAAAATTTCAAGGTTCATCTTACTGTAGATTGTGTTTCCAAAGCTTTCGCCCCCTATTCTAAGACTTACTATTAGCAGTCATGTAGTCTTTTTTACGCCTACTGTACCTTCGTTCATCGACTAGATACAGTAACCCAAATAACATCATTTTGTAGCTCTTGAGTTGTTCTATTATATCCATTTTAGTTGGTCCAGAAGTATTAAATTTGAAGGAAGTTATGGTCCGTTTTAGGACCTGCTAGAGGTGCTGGACAAATTGAAAATCTACAGTAGTTTTCTCGAATGACGTCATAGAATGAGCAATGTCACACCCATCTGTGAGTAGCTGGTGTTGCCCACAAAATAGCACTATTAAAGGACGCATAGGTCATGAGAACTAGATAGAGAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTC</canonical>
            <polymorphic>TACTTTTTTTGGGCATTACCGTATGAACCATAAGAATTTTGTACCATTAGAATTAAAAAAAATCTAAAATTTCAAGGTTCATCTTACTGTAGATTGTGTTTCCAAAGCTTTCGCCCCCTATTCTAAGACTTACTATTAGCAGTCATGTAGTCTTTTTTACGCCTACTGTACCTTCGTTCATCGACTAGATACAGTAACCCAAATAACATCATTTTGTAGCTCTTGAGTTGTTCTATTATATCCATTTTAGTTGGTCCAGAAGTATTAAATTTGAAGGAAGTTATGGTCCGTTTTAGGACCTGCTAGAGGTGCTGGACAAATTGAAAATCTACAGTAGTTTTCTCGAATGACGTCATAGAATGAGCAATGTCACACCCATCTGTGAGTAGCTGGTGTTGCCCACAAAATAGCACTATTAAAGGACGCATAGGTCATGAGAACTAGATAGAGAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACYAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAGAGAGAGACGCAGACAA</pcr_primer_p1>
		<pcr_primer_p2>TAGATGAAATGTGAGAGTTTGTG</pcr_primer_p2>
		<pcr_amplicon_size>569</pcr_amplicon_size>
		<canonical_amplicon>TAGAGAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTC</canonical_amplicon>
		<polymorphic_amplicon>TAGAGAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACYAACAGCCCACTATTCAACTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9183</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>440022</contig_pos>
        <strand>+</strand>
        <context>AGTTCCTGGA[A/G]TAATTTGAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCCGAACTGCTTGTTGGCGATTTCTCGTCCGTAACGAAGTTCCTGGA</left_flank>
        <right_flank>TAATTTGAGTTGGGAAAGAGTGAGAAAATTGGCTTAGAATGGCCCAAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCAGAACCTGATAATCCAGGAATCCAAAATTCTAGGAATCCAGGATCTCGGAAATCTAATACCTGAGGATTCGAAGATCCGAGGATCTCAGGCTTCGATAATCGGTGTTCAGAAGATTCAAGGATCCGATGAAGCCTCGCAAATTCCAAAAATCGGAGACTTCGTAGAAGATAGGTATTTCAGAGAATCCGAACCATTTTCAACCATTTCCAGCCTAATTTTCAGCCTAAAATCCCTCAAAACCCCTCCCACCTTCAATATCTCTGGTGGAATTCGATTGCGATGCTTCATCTCAGGATATCGTCGTTTATAGAAGTCGAAAACCTCGGAAACGTCCGTCCCGTCTTGACAAATCGACGCACAATAATAGGCACGAGTCAGGAAATCCGAGAATTTCGAAAAACTTTTCGATTCCGCTTCAGCCAAACTCATTAGCGTTAGAGCCGCTTTTCCGAACTGCTTGTTGGCGATTTCTCGTCCGTAACGAAGTTCCTGGAATAATTTGAGTTGGGAAAGAGTGAGAAAATTGGCTTAGAATGGCCCAAAATTGGTGCAAAATGGTCAAAAACAGTCCAAAATAGGCTCAAAATCGTCCAAAATTTGCAAAAAATGGTCAAAAACTCATGAAAAATTGATCCTAAATAGATCTAAATTAGTCAAAAACAGGCTTAAAATAGTTAAAAATTCACTAATTTTTTTAAAGCGAATTTTGAATCTTTTTTATTTGATTTCAGATCATTTTAGGCCGTTTTGGGGCATGTTTTGGATCGATTTTAGTGGATTTTTAGTCATTTTTAGAAGAATTTGGACCATTTTGAGTTATTTTTAGCGAATTTTGGACCGGTTTTGGCCTGTTTCATGAATTTTTAGTGATTTTGAGCCTATTTTGAGGAGATTCGGGCCTGTTCAGGACTGTTTTCGACTATGTTAGGCTTATTTTTGATCATTTTTGACCTATTTCGGACTATTTTAGATTATTTTAGGCTTATTTTCAACCT</canonical>
            <polymorphic>GATCAGAACCTGATAATCCAGGAATCCAAAATTCTAGGAATCCAGGATCTCGGAAATCTAATACCTGAGGATTCGAAGATCCGAGGATCTCAGGCTTCGATAATCGGTGTTCAGAAGATTCAAGGATCCGATGAAGCCTCGCAAATTCCAAAAATCGGAGACTTCGTAGAAGATAGGTATTTCAGAGAATCCGAACCATTTTCAACCATTTCCAGCCTAATTTTCAGCCTAAAATCCCTCAAAACCCCTCCCACCTTCAATATCTCTGGTGGAATTCGATTGCGATGCTTCATCTCAGGATATCGTCGTTTATAGAAGTCGAAAACCTCGGAAACGTCCGTCCCGTCTTGACAAATCGACGCACAATAATAGGCACGAGTCAGGAAATCCGAGAATTTCGAAAAACTTTTCGATTCCGCTTCAGCCAAACTCATTAGCGTTAGAGCCGCTTTTCCGAACTGCTTGTTGGCGATTTCTCGTCCGTAACGAAGTTCCTGGARTAATTTGAGTTGGGAAAGAGTGAGAAAATTGGCTTAGAATGGCCCAAAATTGGTGCAAAATGGTCAAAAACAGTCCAAAATAGGCTCAAAATCGTCCAAAATTTGCAAAAAATGGTCAAAAACTCATGAAAAATTGATCCTAAATAGATCTAAATTAGTCAAAAACAGGCTTAAAATAGTTAAAAATTCACTAATTTTTTTAAAGCGAATTTTGAATCTTTTTTATTTGATTTCAGATCATTTTAGGCCGTTTTGGGGCATGTTTTGGATCGATTTTAGTGGATTTTTAGTCATTTTTAGAAGAATTTGGACCATTTTGAGTTATTTTTAGCGAATTTTGGACCGGTTTTGGCCTGTTTCATGAATTTTTAGTGATTTTGAGCCTATTTTGAGGAGATTCGGGCCTGTTCAGGACTGTTTTCGACTATGTTAGGCTTATTTTTGATCATTTTTGACCTATTTCGGACTATTTTAGATTATTTTAGGCTTATTTTCAACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAACTCATTAGCGTTAGAGC</pcr_primer_p1>
		<pcr_primer_p2>TTTGGACAATTTTAAGGTAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>673</pcr_amplicon_size>
		<canonical_amplicon>CAAACTCATTAGCGTTAGAGCCGCTTTTCCGAACTGCTTGTTGGCGATTTCTCGTCCGTAACGAAGTTCCTGGAATAATTTGAGTTGGGAAAGAGTGA</canonical_amplicon>
		<polymorphic_amplicon>CAAACTCATTAGCGTTAGAGCCGCTTTTCCGAACTGCTTGTTGGCGATTTCTCGTCCGTAACGAAGTTCCTGGARTAATTTGAGTTGGGAAAGAGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9184</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>493033</contig_pos>
        <strand>+</strand>
        <context>TATTTGGGCG[A/G]TCAAAAGGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGTCGTGAATCTTGGATCAACGAACTACGATTTGGTGGATATTTGGGCG</left_flank>
        <right_flank>TCAAAAGGGAGGCTCTTCAGAACTATGATAAGGCTGTTAAAGGTGAAAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAATCAATTCTAAATAAGCTGAAAAAATCGCTGAAAATGAGCTGAAACCCGCTGAAAATCGCTGAAAAATTACTCAAAGACAGCGAAAATTGGCTCTAAATAGTCCAAAATGGGTCGTCTAAATTTGGTGAAATTTGGTCGAAAATGACTCTGAAAAGCTCTAAAAACAACCTAAATTGCATAAAATTGCTTCAAAAAGCCCAAATTTGAAGCGGAATGAGCTCAAATGGCTCAAAATTTGCTTTAAAATAGCGGAAATTAACTCTAAATGGTCCAAAATAGTTCAACTTTGGTGAAAATCGGTCGAAAATGACTGTGAAAAGCCCTAAAAACTCCTAAATTGCTTCGAAAATCCCAAAAATGCAATAATTTTCAGTGATGGACCTGATGGAGAACAAGGAACCTGGAAGTGCTGAAAATGGCGGAAAGCGTGGGCGTGGAGCGAGAAGAGTCGTGAATCTTGGATCAACGAACTACGATTTGGTGGATATTTGGGCGATCAAAAGGGAGGCTCTTCAGAACTATGATAAGGCTGTTAAAGGTGAAAAAACGCTGAAAAATGGATATTTTTAGGGAAAATTCATGAAATTTCTGTAAAAAATAGCCCAAAAATGGTCAGATTTGGCTAGAAAAATCGCTCGAAATGAGTGTTTTTAGCAGAAAATAGGTCAAAAACAGTCGGAAAATCACGGATGTTGTCTTAAAAAGTTAAATTTTCGAGCTCAAAAACGCATTTTTCCAGCTTTTTTAACCTAAAAATCTCACTTTTCGCATCTAAAACCACAAATTCTATCGGAAAATGGCACAAAAATTGTATTTTTCAGCTGAAAAATCGAATTTTCAAGGTTTAAAAACCAAAATTTGCGTCTTAAAACTGCCAAATTTGAATCCCTATTCTATGAAAAATGTTTTTAGGTTGAAATTTAACATTTGAGGCCCTTAAAAATTGAATTTTTGAGCCAAAAAATGAAATTTTGGGTTTTAAAACTCCAATTTTCT</canonical>
            <polymorphic>TAAATCAATTCTAAATAAGCTGAAAAAATCGCTGAAAATGAGCTGAAACCCGCTGAAAATCGCTGAAAAATTACTCAAAGACAGCGAAAATTGGCTCTAAATAGTCCAAAATGGGTCGTCTAAATTTGGTGAAATTTGGTCGAAAATGACTCTGAAAAGCTCTAAAAACAACCTAAATTGCATAAAATTGCTTCAAAAAGCCCAAATTTGAAGCGGAATGAGCTCAAATGGCTCAAAATTTGCTTTAAAATAGCGGAAATTAACTCTAAATGGTCCAAAATAGTTCAACTTTGGTGAAAATCGGTCGAAAATGACTGTGAAAAGCCCTAAAAACTCCTAAATTGCTTCGAAAATCCCAAAAATGCAATAATTTTCAGTGATGGACCTGATGGAGAACAAGGAACCTGGAAGTGCTGAAAATGGCGGAAAGCGTGGGCGTGGAGCGAGAAGAGTCGTGAATCTTGGATCAACGAACTACGATTTGGTGGATATTTGGGCGRTCAAAAGGGAGGCTCTTCAGAACTATGATAAGGCTGTTAAAGGTGAAAAAACGCTGAAAAATGGATATTTTTAGGGAAAATTCATGAAATTTCTGTAAAAAATAGCCCAAAAATGGTCAGATTTGGCTAGAAAAATCGCTCGAAATGAGTGTTTTTAGCAGAAAATAGGTCAAAAACAGTCGGAAAATCACGGATGTTGTCTTAAAAAGTTAAATTTTCGAGCTCAAAAACGCATTTTTCCAGCTTTTTTAACCTAAAAATCTCACTTTTCGCATCTAAAACCACAAATTCTATCGGAAAATGGCACAAAAATTGTATTTTTCAGCTGAAAAATCGAATTTTCAAGGTTTAAAAACCAAAATTTGCGTCTTAAAACTGCCAAATTTGAATCCCTATTCTATGAAAAATGTTTTTAGGTTGAAATTTAACATTTGAGGCCCTTAAAAATTGAATTTTTGAGCCAAAAAATGAAATTTTGGGTTTTAAAACTCCAATTTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>502 464 34</canonical_bands>
                <polymorphic_bands>536 464</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAATTTTCAGTGATGGACCTG</pcr_primer_p1>
		<pcr_primer_p2>ACCATTTTTGGGCTATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATAATTTTCAGTGATGGACCTGATGGAGAACAAGGAACCTGGAAGTGCTGAAAATGGCGGAAAGCGTGGGCGTGGAGCGAGAAGAGTCGTGAATCTTGGATCAACGAACTACGATTTGGTGGATATTTGGGCGATCAAAAGGGAGGCTCTTCAGAACTATGATAAGGCTGTTAAAGGTGAAAAAACGCTGAAAAATGGATATTTTTAGGGAAAATTCATGAAATTTCTGTAAAAAATAGCCCAAAAATGGT</canonical_amplicon>
		<polymorphic_amplicon>ATAATTTTCAGTGATGGACCTGATGGAGAACAAGGAACCTGGAAGTGCTGAAAATGGCGGAAAGCGTGGGCGTGGAGCGAGAAGAGTCGTGAATCTTGGATCAACGAACTACGATTTGGTGGATATTTGGGCGRTCAAAAGGGAGGCTCTTCAGAACTATGATAAGGCTGTTAAAGGTGAAAAAACGCTGAAAAATGGATATTTTTAGGGAAAATTCATGAAATTTCTGTAAAAAATAGCCCAAAAATGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9185</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>493130</contig_pos>
        <strand>+</strand>
        <context>AAATTTCTGT[A/G]AAAAATAGCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAACGCTGAAAAATGGATATTTTTAGGGAAAATTCATGAAATTTCTGT</left_flank>
        <right_flank>AAAAATAGCCCAAAAATGGTCAGATTTGGCTAGAAAAATCGCTCGAAATG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATAGTCCAAAATGGGTCGTCTAAATTTGGTGAAATTTGGTCGAAAATGACTCTGAAAAGCTCTAAAAACAACCTAAATTGCATAAAATTGCTTCAAAAAGCCCAAATTTGAAGCGGAATGAGCTCAAATGGCTCAAAATTTGCTTTAAAATAGCGGAAATTAACTCTAAATGGTCCAAAATAGTTCAACTTTGGTGAAAATCGGTCGAAAATGACTGTGAAAAGCCCTAAAAACTCCTAAATTGCTTCGAAAATCCCAAAAATGCAATAATTTTCAGTGATGGACCTGATGGAGAACAAGGAACCTGGAAGTGCTGAAAATGGCGGAAAGCGTGGGCGTGGAGCGAGAAGAGTCGTGAATCTTGGATCAACGAACTACGATTTGGTGGATATTTGGGCGATCAAAAGGGAGGCTCTTCAGAACTATGATAAGGCTGTTAAAGGTGAAAAAACGCTGAAAAATGGATATTTTTAGGGAAAATTCATGAAATTTCTGTAAAAAATAGCCCAAAAATGGTCAGATTTGGCTAGAAAAATCGCTCGAAATGAGTGTTTTTAGCAGAAAATAGGTCAAAAACAGTCGGAAAATCACGGATGTTGTCTTAAAAAGTTAAATTTTCGAGCTCAAAAACGCATTTTTCCAGCTTTTTTAACCTAAAAATCTCACTTTTCGCATCTAAAACCACAAATTCTATCGGAAAATGGCACAAAAATTGTATTTTTCAGCTGAAAAATCGAATTTTCAAGGTTTAAAAACCAAAATTTGCGTCTTAAAACTGCCAAATTTGAATCCCTATTCTATGAAAAATGTTTTTAGGTTGAAATTTAACATTTGAGGCCCTTAAAAATTGAATTTTTGAGCCAAAAAATGAAATTTTGGGTTTTAAAACTCCAATTTTCTTGGATTTTCAGACCCAAAATGACATAATTTTAGTCAAAAATGATGATTTGCGGCATTTTCCAGACCCAAAATTCGGAAAAATACGATTTTCAGACAA</canonical>
            <polymorphic>TAAATAGTCCAAAATGGGTCGTCTAAATTTGGTGAAATTTGGTCGAAAATGACTCTGAAAAGCTCTAAAAACAACCTAAATTGCATAAAATTGCTTCAAAAAGCCCAAATTTGAAGCGGAATGAGCTCAAATGGCTCAAAATTTGCTTTAAAATAGCGGAAATTAACTCTAAATGGTCCAAAATAGTTCAACTTTGGTGAAAATCGGTCGAAAATGACTGTGAAAAGCCCTAAAAACTCCTAAATTGCTTCGAAAATCCCAAAAATGCAATAATTTTCAGTGATGGACCTGATGGAGAACAAGGAACCTGGAAGTGCTGAAAATGGCGGAAAGCGTGGGCGTGGAGCGAGAAGAGTCGTGAATCTTGGATCAACGAACTACGATTTGGTGGATATTTGGGCGATCAAAAGGGAGGCTCTTCAGAACTATGATAAGGCTGTTAAAGGTGAAAAAACGCTGAAAAATGGATATTTTTAGGGAAAATTCATGAAATTTCTGTRAAAAATAGCCCAAAAATGGTCAGATTTGGCTAGAAAAATCGCTCGAAATGAGTGTTTTTAGCAGAAAATAGGTCAAAAACAGTCGGAAAATCACGGATGTTGTCTTAAAAAGTTAAATTTTCGAGCTCAAAAACGCATTTTTCCAGCTTTTTTAACCTAAAAATCTCACTTTTCGCATCTAAAACCACAAATTCTATCGGAAAATGGCACAAAAATTGTATTTTTCAGCTGAAAAATCGAATTTTCAAGGTTTAAAAACCAAAATTTGCGTCTTAAAACTGCCAAATTTGAATCCCTATTCTATGAAAAATGTTTTTAGGTTGAAATTTAACATTTGAGGCCCTTAAAAATTGAATTTTTGAGCCAAAAAATGAAATTTTGGGTTTTAAAACTCCAATTTTCTTGGATTTTCAGACCCAAAATGACATAATTTTAGTCAAAAATGATGATTTGCGGCATTTTCCAGACCCAAAATTCGGAAAAATACGATTTTCAGACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATGATAAGGCTGTTAAAGGTG</pcr_primer_p1>
		<pcr_primer_p2>CGAAAAGTGAGATTTTTAGGTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATGATAAGGCTGTTAAAGGTGAAAAAACGCTGAAAAATGGATATTTTTAGGGAAAATTCATGAAATTTCTGTAAAAAATAGCCCAAAAATGGTCAGATTTGGCTAGAAAAATCGCTCGAAATGAGTGTTTTTAGCAGAAAATAGGTCAAAAACAGTCGGAAAATCACGGATGTTGTCTTAAAAAGTTAAATTTTCGAGCTCAAAAACGCATTTTTCCAGCTTTTTTAACCTAAAAATCTCACTTTTCG</canonical_amplicon>
		<polymorphic_amplicon>CTATGATAAGGCTGTTAAAGGTGAAAAAACGCTGAAAAATGGATATTTTTAGGGAAAATTCATGAAATTTCTGTRAAAAATAGCCCAAAAATGGTCAGATTTGGCTAGAAAAATCGCTCGAAATGAGTGTTTTTAGCAGAAAATAGGTCAAAAACAGTCGGAAAATCACGGATGTTGTCTTAAAAAGTTAAATTTTCGAGCTCAAAAACGCATTTTTCCAGCTTTTTTAACCTAAAAATCTCACTTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9186</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>495293</contig_pos>
        <strand>+</strand>
        <context>GTGAGAGATT[C/T]TGGAAATTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCCTCGAAAGCAGCGATGAGGGATTCACAGGGAACACAGGTGAGAGATT</left_flank>
        <right_flank>TGGAAATTTGAGGCGTTTTGGGTTACTGTAGCTCTTATTGGAGCTACCGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGATATAAAGCTCTGGCTTGGGATACGGTAGATGTTACTCTAGCTAGGATTACTGTAGCCTAGATTACAGCTCTTTACCCTTCTGAAGTATGATTAACAGTAGCTACGATGACATCTACAGTACTCCCAGCCACACAATATCCTCTATTTCCAGATTGTGTACGATCACGAAACGCTGATTTCCCACGACGACTACGCGAAGAATGTGGGCGAATTCACTCTGCCAGGCGCCAGATGGATTCCGGATAACAAGGAGTTGGCGGCGAACTTTGGTGTCGCTGATGTAGAAATCGAGCTGGATGAGGAGCAGGGAAAAGAACAGATCAACGCTTATGGACCGTATACGGATCCCCTGTCGGGTCGTGAAGTCGTCGCACCGCCTCGTTGGTTCGTCGAACAGGAAGCTACTCGACAGCATCTGGAGATTCAGTCACGTGCCACGTCACGAGCCTCGAAAGCAGCGATGAGGGATTCACAGGGAACACAGGTGAGAGATTTTGGAAATTTGAGGCGTTTTGGGTTACTGTAGCTCTTATTGGAGCTACCGTAATCCGATCTACAGTATCCCTGACCACTGTGAGACAAGCTTCGATTACTGTAGATTTTAGTTTGAAAGGAATAAAAGAGCTACTGTAACCCGAACTACAGTATCTCAGACTAATTTGAAATAGCTTGGAATACTGTAGGACGTGCGTTCGCTCAAATTACAGAGCTCGGATTACTGTAGCTTAGGTCACTGTAGATCCCTCTTCTTCAGTTTGGGATACTGTAGATCTTACTGTAGTTATAATTACGGTACTGTGGAAGGATACAAGGCTACAGTAATCCAAGCTAAAAATGAGACCTACAGTATCCATCCTAGACTACAGTAGGATCTGAAAATTTCGAAAATTGTAGATCCTAATTGGAGTACTGTACCCTCCTAGTCAGGTCAGCTACAGTAATCCCGGTTTTTTGCCTTCTTGGGTTACTGTAGTAGATTACTGTAGATCACTCTT</canonical>
            <polymorphic>TAAGATATAAAGCTCTGGCTTGGGATACGGTAGATGTTACTCTAGCTAGGATTACTGTAGCCTAGATTACAGCTCTTTACCCTTCTGAAGTATGATTAACAGTAGCTACGATGACATCTACAGTACTCCCAGCCACACAATATCCTCTATTTCCAGATTGTGTACGATCACGAAACGCTGATTTCCCACGACGACTACGCGAAGAATGTGGGCGAATTCACTCTGCCAGGCGCCAGATGGATTCCGGATAACAAGGAGTTGGCGGCGAACTTTGGTGTCGCTGATGTAGAAATCGAGCTGGATGAGGAGCAGGGAAAAGAACAGATCAACGCTTATGGACCGTATACGGATCCCCTGTCGGGTCGTGAAGTCGTCGCACCGCCTCGTTGGTTCGTCGAACAGGAAGCTACTCGACAGCATCTGGAGATTCAGTCACGTGCCACGTCACGAGCCTCGAAAGCAGCGATGAGGGATTCACAGGGAACACAGGTGAGAGATTYTGGAAATTTGAGGCGTTTTGGGTTACTGTAGCTCTTATTGGAGCTACCGTAATCCGATCTACAGTATCCCTGACCACTGTGAGACAAGCTTCGATTACTGTAGATTTTAGTTTGAAAGGAATAAAAGAGCTACTGTAACCCGAACTACAGTATCTCAGACTAATTTGAAATAGCTTGGAATACTGTAGGACGTGCGTTCGCTCAAATTACAGAGCTCGGATTACTGTAGCTTAGGTCACTGTAGATCCCTCTTCTTCAGTTTGGGATACTGTAGATCTTACTGTAGTTATAATTACGGTACTGTGGAAGGATACAAGGCTACAGTAATCCAAGCTAAAAATGAGACCTACAGTATCCATCCTAGACTACAGTAGGATCTGAAAATTTCGAAAATTGTAGATCCTAATTGGAGTACTGTACCCTCCTAGTCAGGTCAGCTACAGTAATCCCGGTTTTTTGCCTTCTTGGGTTACTGTAGTAGATTACTGTAGATCACTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCATCTGGAGATTCAGTC</pcr_primer_p1>
		<pcr_primer_p2>CTGAGATACTGTAGTTCGGGTTA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAGCATCTGGAGATTCAGTCACGTGCCACGTCACGAGCCTCGAAAGCAGCGATGAGGGATTCACAGGGAACACAGGTGAGAGATTTTGGAAATTTGAGGCGTTTTGGGTTACTGTAGCTCTTATTGGAGCTACCGTAATCCGATCTACAGTATCCCTGACCACTGTGAGACAAGCTTCGATTACTGTAGATTTTAGTTTGAAAGGAATAAAAGAGCTACTGTAACCCGAACTACAGTATCTCAG</canonical_amplicon>
		<polymorphic_amplicon>CAGCATCTGGAGATTCAGTCACGTGCCACGTCACGAGCCTCGAAAGCAGCGATGAGGGATTCACAGGGAACACAGGTGAGAGATTYTGGAAATTTGAGGCGTTTTGGGTTACTGTAGCTCTTATTGGAGCTACCGTAATCCGATCTACAGTATCCCTGACCACTGTGAGACAAGCTTCGATTACTGTAGATTTTAGTTTGAAAGGAATAAAAGAGCTACTGTAACCCGAACTACAGTATCTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9187</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>537375</contig_pos>
        <strand></strand>
        <context>TACAGTCTCG[A/G]TGTATACCAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAGCCAAGTGTACAGTACTTGGGATTACTGTGCCGATCATACAGTCTCG</left_flank>
        <right_flank>TGTATACCACATCCCGTATTTCCTACGCCAACTTTGAGCTCAATTATCTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCGGTCGCGACGCGCGCACGCTGACCGTCAGCGGGATGGATGAGGCAAATTTCCCCCCTTCAGAAATTTGGGGCGGACAGCCAGAGCGGGATGGGATGGGAAAAAAAGAAAGTCTTGGCACAATGCCAAAAAGGGGCGGAGTCTCGCCACCTAGTGAGAAAAAAAGGGCGCCGCTGGCCGCGAGGTCATAAATCAGATGGAAACGGATGCGAAGAAGTTTGAAATTTCAAAAAAAAAAAGAAAATTTAAAGGGACAGACAAATTTTAAACAAATTAGAATTCAAAAATTCAGAAAAGGGCTCTTTTCCCCTTCTGCTCCGTTTTGTGCATCTTTTCCGCTTTCTCCAAAATAGGCCACGCCCCCTTTTTAAGGGGAGGGGCCTCTCTTTTTGGGGTGCCCTTTTTGGAGCACTTAAATTAACGAAAATGGGAATTTTTGAGGATTACTGTAGCCAAGTGTACAGTACTTGGGATTACTGTGCCGATCATACAGTCTCGATGTATACCACATCCCGTATTTCCTACGCCAACTTTGAGCTCAATTATCTCACTTCCCATGAGAGCTATCAAAATTTTGTCAACTGATAAAATGTTGTTGATATTATGATAAACAATTTATCAGTTGACAAAACTTTGATATCTTTTGTAGGAGCCGAGATAATTGAGCTCAACGTTGACAGGGGTTCTATTAGAGAGGGTAGAGAGGGGTACGGTGTGTGAGGAATTTTTAAAAGCTTGAAATTCCGAAATTTTGGCAGTTTCTGCCACAAAAACCTCATCTCATTGAAATTGGGAAGGATTAGTAGAAAACAATTGGTGTCCCACACATACTCAGAAAAAGGGTCCACCCGATGAAAAAAGAAAAATTAAAACGGATAGAGAGTATCCGAGCCCGGAGCCCGGGTCGCATTTCAAAGGGGACTACGACAGGTGGCACTATTCGGCGGATACGTGACTCATTGATTGATTGGAAGAAGAGCTCCTCTAGGGGCGGAAGAA</canonical>
            <polymorphic>CGCGGTCGCGACGCGCGCACGCTGACCGTCAGCGGGATGGATGAGGCAAATTTCCCCCCTTCAGAAATTTGGGGCGGACAGCCAGAGCGGGATGGGATGGGAAAAAAAGAAAGTCTTGGCACAATGCCAAAAAGGGGCGGAGTCTCGCCACCTAGTGAGAAAAAAAGGGCGCCGCTGGCCGCGAGGTCATAAATCAGATGGAAACGGATGCGAAGAAGTTTGAAATTTCAAAAAAAAAAAGAAAATTTAAAGGGACAGACAAATTTTAAACAAATTAGAATTCAAAAATTCAGAAAAGGGCTCTTTTCCCCTTCTGCTCCGTTTTGTGCATCTTTTCCGCTTTCTCCAAAATAGGCCACGCCCCCTTTTTAAGGGGAGGGGCCTCTCTTTTTGGGGTGCCCTTTTTGGAGCACTTAAATTAACGAAAATGGGAATTTTTGAGGATTACTGTAGCCAAGTGTACAGTACTTGGGATTACTGTGCCGATCATACAGTCTCGRTGTATACCACATCCCGTATTTCCTACGCCAACTTTGAGCTCAATTATCTCACTTCCCATGAGAGCTATCAAAATTTTGTCAACTGATAAAATGTTGTTGATATTATGATAAACAATTTATCAGTTGACAAAACTTTGATATCTTTTGTAGGAGCCGAGATAATTGAGCTCAACGTTGACAGGGGTTCTATTAGAGAGGGTAGAGAGGGGTACGGTGTGTGAGGAATTTTTAAAAGCTTGAAATTCCGAAATTTTGGCAGTTTCTGCCACAAAAACCTCATCTCATTGAAATTGGGAAGGATTAGTAGAAAACAATTGGTGTCCCACACATACTCAGAAAAAGGGTCCACCCGATGAAAAAAGAAAAATTAAAACGGATAGAGAGTATCCGAGCCCGGAGCCCGGGTCGCATTTCAAAGGGGACTACGACAGGTGGCACTATTCGGCGGATACGTGACTCATTGATTGATTGGAAGAAGAGCTCCTCTAGGGGCGGAAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>504 489 7</canonical_bands>
                <polymorphic_bands>993 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGATTACTGTAGCCAAGTGTA</pcr_primer_p1>
		<pcr_primer_p2>TTTTAAAAATTCCTCACACACC</pcr_primer_p2>
		<pcr_amplicon_size>295</pcr_amplicon_size>
		<canonical_amplicon>GAGGATTACTGTAGCCAAGTGTACAGTACTTGGGATTACTGTGCCGATCATACAGTCTCGATGTATACCACATCCCGTATTTCCTACGCCAACTTTGAGCTCAATTATCTCACTTCCCATGAGAGCTATCAAAATTTTGTCAACTGATAAAATGTTGTTGATATTATGATAAACAATTTATCAGTTGACAAAACTTTGATATCTTTTGTAGGAGCCGAGATAATTGAGCTCAACGTTGACAGGGGTTCTATTAGAGAGGGTAGAGAGGGGTACGGTGTGTGAGGAATTTTTAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAGGATTACTGTAGCCAAGTGTACAGTACTTGGGATTACTGTGCCGATCATACAGTCTCGRTGTATACCACATCCCGTATTTCCTACGCCAACTTTGAGCTCAATTATCTCACTTCCCATGAGAGCTATCAAAATTTTGTCAACTGATAAAATGTTGTTGATATTATGATAAACAATTTATCAGTTGACAAAACTTTGATATCTTTTGTAGGAGCCGAGATAATTGAGCTCAACGTTGACAGGGGTTCTATTAGAGAGGGTAGAGAGGGGTACGGTGTGTGAGGAATTTTTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9188</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>537288</contig_pos>
        <strand></strand>
        <context>TTTTGGAGCA[C/T]TTAAATTAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCTTTTTAAGGGGAGGGGCCTCTCTTTTTGGGGTGCCCTTTTTGGAGCA</left_flank>
        <right_flank>TTAAATTAACGAAAATGGGAATTTTTGAGGATTACTGTAGCCAAGTGTAC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTGTGTAAATGGGAGAGAGCGGAGGAGCGGTCGTCGATCTCCGAATGTCTGCGTCTCTTCGCTCGACGTCATCTTTTCGGGTGCGACGCGGTCGCGACGCGCGCACGCTGACCGTCAGCGGGATGGATGAGGCAAATTTCCCCCCTTCAGAAATTTGGGGCGGACAGCCAGAGCGGGATGGGATGGGAAAAAAAGAAAGTCTTGGCACAATGCCAAAAAGGGGCGGAGTCTCGCCACCTAGTGAGAAAAAAAGGGCGCCGCTGGCCGCGAGGTCATAAATCAGATGGAAACGGATGCGAAGAAGTTTGAAATTTCAAAAAAAAAAAGAAAATTTAAAGGGACAGACAAATTTTAAACAAATTAGAATTCAAAAATTCAGAAAAGGGCTCTTTTCCCCTTCTGCTCCGTTTTGTGCATCTTTTCCGCTTTCTCCAAAATAGGCCACGCCCCCTTTTTAAGGGGAGGGGCCTCTCTTTTTGGGGTGCCCTTTTTGGAGCACTTAAATTAACGAAAATGGGAATTTTTGAGGATTACTGTAGCCAAGTGTACAGTACTTGGGATTACTGTGCCGATCATACAGTCTCGATGTATACCACATCCCGTATTTCCTACGCCAACTTTGAGCTCAATTATCTCACTTCCCATGAGAGCTATCAAAATTTTGTCAACTGATAAAATGTTGTTGATATTATGATAAACAATTTATCAGTTGACAAAACTTTGATATCTTTTGTAGGAGCCGAGATAATTGAGCTCAACGTTGACAGGGGTTCTATTAGAGAGGGTAGAGAGGGGTACGGTGTGTGAGGAATTTTTAAAAGCTTGAAATTCCGAAATTTTGGCAGTTTCTGCCACAAAAACCTCATCTCATTGAAATTGGGAAGGATTAGTAGAAAACAATTGGTGTCCCACACATACTCAGAAAAAGGGTCCACCCGATGAAAAAAGAAAAATTAAAACGGATAGAGAGTATCCGAGCCCGGAGCCCGGGTCGCATTT</canonical>
            <polymorphic>AGTGTGTAAATGGGAGAGAGCGGAGGAGCGGTCGTCGATCTCCGAATGTCTGCGTCTCTTCGCTCGACGTCATCTTTTCGGGTGCGACGCGGTCGCGACGCGCGCACGCTGACCGTCAGCGGGATGGATGAGGCAAATTTCCCCCCTTCAGAAATTTGGGGCGGACAGCCAGAGCGGGATGGGATGGGAAAAAAAGAAAGTCTTGGCACAATGCCAAAAAGGGGCGGAGTCTCGCCACCTAGTGAGAAAAAAAGGGCGCCGCTGGCCGCGAGGTCATAAATCAGATGGAAACGGATGCGAAGAAGTTTGAAATTTCAAAAAAAAAAAGAAAATTTAAAGGGACAGACAAATTTTAAACAAATTAGAATTCAAAAATTCAGAAAAGGGCTCTTTTCCCCTTCTGCTCCGTTTTGTGCATCTTTTCCGCTTTCTCCAAAATAGGCCACGCCCCCTTTTTAAGGGGAGGGGCCTCTCTTTTTGGGGTGCCCTTTTTGGAGCAYTTAAATTAACGAAAATGGGAATTTTTGAGGATTACTGTAGCCAAGTGTACAGTACTTGGGATTACTGTGCCGATCATACAGTCTCGATGTATACCACATCCCGTATTTCCTACGCCAACTTTGAGCTCAATTATCTCACTTCCCATGAGAGCTATCAAAATTTTGTCAACTGATAAAATGTTGTTGATATTATGATAAACAATTTATCAGTTGACAAAACTTTGATATCTTTTGTAGGAGCCGAGATAATTGAGCTCAACGTTGACAGGGGTTCTATTAGAGAGGGTAGAGAGGGGTACGGTGTGTGAGGAATTTTTAAAAGCTTGAAATTCCGAAATTTTGGCAGTTTCTGCCACAAAAACCTCATCTCATTGAAATTGGGAAGGATTAGTAGAAAACAATTGGTGTCCCACACATACTCAGAAAAAGGGTCCACCCGATGAAAAAAGAAAAATTAAAACGGATAGAGAGTATCCGAGCCCGGAGCCCGGGTCGCATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>499 244 129 128</canonical_bands>
                <polymorphic_bands>627 244 129</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>389 225 129 128 98 12 12 7</canonical_bands>
                <polymorphic_bands>389 225 140 129 98 12 7</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>171 165 102 78 65 52 48 48 42 40 30 29 27 22 22 21 14 7 5 4 2 2 2 2</canonical_bands>
                <polymorphic_bands>171 165 102 78 65 62 52 48 42 40 30 29 27 22 22 21 7 5 4 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAAAGGGACAGACAAATTTTA</pcr_primer_p1>
		<pcr_primer_p2>ACTGTATGATCGGCACAGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTAAAGGGACAGACAAATTTTAAACAAATTAGAATTCAAAAATTCAGAAAAGGGCTCTTTTCCCCTTCTGCTCCGTTTTGTGCATCTTTTCCGCTTTCTCCAAAATAGGCCACGCCCCCTTTTTAAGGGGAGGGGCCTCTCTTTTTGGGGTGCCCTTTTTGGAGCACTTAAATTAACGAAAATGGGAATTTTTGAGGATTACTGTAGCCAAGTGTACAGTACTTGGGATTACTGTGCCGATCATACAGT</canonical_amplicon>
		<polymorphic_amplicon>TTTAAAGGGACAGACAAATTTTAAACAAATTAGAATTCAAAAATTCAGAAAAGGGCTCTTTTCCCCTTCTGCTCCGTTTTGTGCATCTTTTCCGCTTTCTCCAAAATAGGCCACGCCCCCTTTTTAAGGGGAGGGGCCTCTCTTTTTGGGGTGCCCTTTTTGGAGCAYTTAAATTAACGAAAATGGGAATTTTTGAGGATTACTGTAGCCAAGTGTACAGTACTTGGGATTACTGTGCCGATCATACAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9189</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>537150</contig_pos>
        <strand></strand>
        <context>TTTAAACAAA[T/G]TAGAATTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATTTCAAAAAAAAAAAGAAAATTTAAAGGGACAGACAAATTTTAAACAAA</left_flank>
        <right_flank>TAGAATTCAAAAATTCAGAAAAGGGCTCTTTTCCCCTTCTGCTCCGTTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAGACGGCGAGAGAAAGAGAAGTGTGTGGGCGGAGTTTGGCCGAATGCCAAGGCATATGGACACACACATTGCGAGCGCGCGCGGCCCTGTGCTCGTGATCACGAGTTGTTTGTTGCAATGGCCAGAAGGAGAAATAGTGTGTAAATGGGAGAGAGCGGAGGAGCGGTCGTCGATCTCCGAATGTCTGCGTCTCTTCGCTCGACGTCATCTTTTCGGGTGCGACGCGGTCGCGACGCGCGCACGCTGACCGTCAGCGGGATGGATGAGGCAAATTTCCCCCCTTCAGAAATTTGGGGCGGACAGCCAGAGCGGGATGGGATGGGAAAAAAAGAAAGTCTTGGCACAATGCCAAAAAGGGGCGGAGTCTCGCCACCTAGTGAGAAAAAAAGGGCGCCGCTGGCCGCGAGGTCATAAATCAGATGGAAACGGATGCGAAGAAGTTTGAAATTTCAAAAAAAAAAAGAAAATTTAAAGGGACAGACAAATTTTAAACAAATTAGAATTCAAAAATTCAGAAAAGGGCTCTTTTCCCCTTCTGCTCCGTTTTGTGCATCTTTTCCGCTTTCTCCAAAATAGGCCACGCCCCCTTTTTAAGGGGAGGGGCCTCTCTTTTTGGGGTGCCCTTTTTGGAGCACTTAAATTAACGAAAATGGGAATTTTTGAGGATTACTGTAGCCAAGTGTACAGTACTTGGGATTACTGTGCCGATCATACAGTCTCGATGTATACCACATCCCGTATTTCCTACGCCAACTTTGAGCTCAATTATCTCACTTCCCATGAGAGCTATCAAAATTTTGTCAACTGATAAAATGTTGTTGATATTATGATAAACAATTTATCAGTTGACAAAACTTTGATATCTTTTGTAGGAGCCGAGATAATTGAGCTCAACGTTGACAGGGGTTCTATTAGAGAGGGTAGAGAGGGGTACGGTGTGTGAGGAATTTTTAAAAGCTTGAAATTCCGAAATTTTGGCAGTTTCTGCCACAAAAAC</canonical>
            <polymorphic>CAGAGACGGCGAGAGAAAGAGAAGTGTGTGGGCGGAGTTTGGCCGAATGCCAAGGCATATGGACACACACATTGCGAGCGCGCGCGGCCCTGTGCTCGTGATCACGAGTTGTTTGTTGCAATGGCCAGAAGGAGAAATAGTGTGTAAATGGGAGAGAGCGGAGGAGCGGTCGTCGATCTCCGAATGTCTGCGTCTCTTCGCTCGACGTCATCTTTTCGGGTGCGACGCGGTCGCGACGCGCGCACGCTGACCGTCAGCGGGATGGATGAGGCAAATTTCCCCCCTTCAGAAATTTGGGGCGGACAGCCAGAGCGGGATGGGATGGGAAAAAAAGAAAGTCTTGGCACAATGCCAAAAAGGGGCGGAGTCTCGCCACCTAGTGAGAAAAAAAGGGCGCCGCTGGCCGCGAGGTCATAAATCAGATGGAAACGGATGCGAAGAAGTTTGAAATTTCAAAAAAAAAAAGAAAATTTAAAGGGACAGACAAATTTTAAACAAAKTAGAATTCAAAAATTCAGAAAAGGGCTCTTTTCCCCTTCTGCTCCGTTTTGTGCATCTTTTCCGCTTTCTCCAAAATAGGCCACGCCCCCTTTTTAAGGGGAGGGGCCTCTCTTTTTGGGGTGCCCTTTTTGGAGCACTTAAATTAACGAAAATGGGAATTTTTGAGGATTACTGTAGCCAAGTGTACAGTACTTGGGATTACTGTGCCGATCATACAGTCTCGATGTATACCACATCCCGTATTTCCTACGCCAACTTTGAGCTCAATTATCTCACTTCCCATGAGAGCTATCAAAATTTTGTCAACTGATAAAATGTTGTTGATATTATGATAAACAATTTATCAGTTGACAAAACTTTGATATCTTTTGTAGGAGCCGAGATAATTGAGCTCAACGTTGACAGGGGTTCTATTAGAGAGGGTAGAGAGGGGTACGGTGTGTGAGGAATTTTTAAAAGCTTGAAATTCCGAAATTTTGGCAGTTTCTGCCACAAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>273 158 130 109 63 47 42 30 27 20 18 17 17 16 11 8 8 6</canonical_bands>
                <polymorphic_bands>273 158 130 109 63 47 42 30 27 20 18 17 17 17 16 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATGCGAAGAAGTTTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>GGCTACAGTAATCCTCAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATGCGAAGAAGTTTGAAATTTCAAAAAAAAAAAGAAAATTTAAAGGGACAGACAAATTTTAAACAAATTAGAATTCAAAAATTCAGAAAAGGGCTCTTTTCCCCTTCTGCTCCGTTTTGTGCATCTTTTCCGCTTTCTCCAAAATAGGCCACGCCCCCTTTTTAAGGGGAGGGGCCTCTCTTTTTGGGGTGCCCTTTTTGGAGCACTTAAATTAACGAAAATGGGAATTTTTGAGGATTACTGTAGCC</canonical_amplicon>
		<polymorphic_amplicon>GATGCGAAGAAGTTTGAAATTTCAAAAAAAAAAAGAAAATTTAAAGGGACAGACAAATTTTAAACAAAKTAGAATTCAAAAATTCAGAAAAGGGCTCTTTTCCCCTTCTGCTCCGTTTTGTGCATCTTTTCCGCTTTCTCCAAAATAGGCCACGCCCCCTTTTTAAGGGGAGGGGCCTCTCTTTTTGGGGTGCCCTTTTTGGAGCACTTAAATTAACGAAAATGGGAATTTTTGAGGATTACTGTAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9190</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>537686</contig_pos>
        <strand></strand>
        <context>TTAGTAGAAA[A/G]CAATTGGTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTGCCACAAAAACCTCATCTCATTGAAATTGGGAAGGATTAGTAGAAA</left_flank>
        <right_flank>CAATTGGTGTCCCACACATACTCAGAAAAAGGGTCCACCCGATGAAAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGCTCCGTTTTGTGCATCTTTTCCGCTTTCTCCAAAATAGGCCACGCCCCCTTTTTAAGGGGAGGGGCCTCTCTTTTTGGGGTGCCCTTTTTGGAGCACTTAAATTAACGAAAATGGGAATTTTTGAGGATTACTGTAGCCAAGTGTACAGTACTTGGGATTACTGTGCCGATCATACAGTCTCGATGTATACCACATCCCGTATTTCCTACGCCAACTTTGAGCTCAATTATCTCACTTCCCATGAGAGCTATCAAAATTTTGTCAACTGATAAAATGTTGTTGATATTATGATAAACAATTTATCAGTTGACAAAACTTTGATATCTTTTGTAGGAGCCGAGATAATTGAGCTCAACGTTGACAGGGGTTCTATTAGAGAGGGTAGAGAGGGGTACGGTGTGTGAGGAATTTTTAAAAGCTTGAAATTCCGAAATTTTGGCAGTTTCTGCCACAAAAACCTCATCTCATTGAAATTGGGAAGGATTAGTAGAAAACAATTGGTGTCCCACACATACTCAGAAAAAGGGTCCACCCGATGAAAAAAGAAAAATTAAAACGGATAGAGAGTATCCGAGCCCGGAGCCCGGGTCGCATTTCAAAGGGGACTACGACAGGTGGCACTATTCGGCGGATACGTGACTCATTGATTGATTGGAAGAAGAGCTCCTCTAGGGGCGGAAGAAAGATAGAGTGATGGATCTACTAGGGACGGGATAGAACAACACTCTTTGGGCCTTCTTCCTTTAAAGGGACATATCTCTAAAACCAAAAAAGCAATCTGAAAGTGGTTCACTACAAAAATGTAAAGCATAAAATTTTGCAATTTTTGTTAGTTGGTCATTTTTAAAGAGCTTTCTTACTTTTTGAGATATGCGCCTTTAAATATGGGGCACCCAAGTGCCCCTCCCTTTTGTTGCGAGCTGTGTGAAAATAGAAAAAGCTGTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCAAAATTCCGTTCAA</canonical>
            <polymorphic>TTCTGCTCCGTTTTGTGCATCTTTTCCGCTTTCTCCAAAATAGGCCACGCCCCCTTTTTAAGGGGAGGGGCCTCTCTTTTTGGGGTGCCCTTTTTGGAGCACTTAAATTAACGAAAATGGGAATTTTTGAGGATTACTGTAGCCAAGTGTACAGTACTTGGGATTACTGTGCCGATCATACAGTCTCGATGTATACCACATCCCGTATTTCCTACGCCAACTTTGAGCTCAATTATCTCACTTCCCATGAGAGCTATCAAAATTTTGTCAACTGATAAAATGTTGTTGATATTATGATAAACAATTTATCAGTTGACAAAACTTTGATATCTTTTGTAGGAGCCGAGATAATTGAGCTCAACGTTGACAGGGGTTCTATTAGAGAGGGTAGAGAGGGGTACGGTGTGTGAGGAATTTTTAAAAGCTTGAAATTCCGAAATTTTGGCAGTTTCTGCCACAAAAACCTCATCTCATTGAAATTGGGAAGGATTAGTAGAAARCAATTGGTGTCCCACACATACTCAGAAAAAGGGTCCACCCGATGAAAAAAGAAAAATTAAAACGGATAGAGAGTATCCGAGCCCGGAGCCCGGGTCGCATTTCAAAGGGGACTACGACAGGTGGCACTATTCGGCGGATACGTGACTCATTGATTGATTGGAAGAAGAGCTCCTCTAGGGGCGGAAGAAAGATAGAGTGATGGATCTACTAGGGACGGGATAGAACAACACTCTTTGGGCCTTCTTCCTTTAAAGGGACATATCTCTAAAACCAAAAAAGCAATCTGAAAGTGGTTCACTACAAAAATGTAAAGCATAAAATTTTGCAATTTTTGTTAGTTGGTCATTTTTAAAGAGCTTTCTTACTTTTTGAGATATGCGCCTTTAAATATGGGGCACCCAAGTGCCCCTCCCTTTTGTTGCGAGCTGTGTGAAAATAGAAAAAGCTGTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCAAAATTCCGTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGGAATTTTTAAAAGCTTGA</pcr_primer_p1>
		<pcr_primer_p2>AATCAATCAATGAGTCACGTATC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TGAGGAATTTTTAAAAGCTTGAAATTCCGAAATTTTGGCAGTTTCTGCCACAAAAACCTCATCTCATTGAAATTGGGAAGGATTAGTAGAAAACAATTGGTGTCCCACACATACTCAGAAAAAGGGTCCACCCGATGAAAAAAGAAAAATTAAAACGGATAGAGAGTATCCGAGCCCGGAGCCCGGGTCGCATTTCAAAGGGGACTACGACAGGTGGCACTATTCGGCGGATACGTGACTCATTGATTGATT</canonical_amplicon>
		<polymorphic_amplicon>TGAGGAATTTTTAAAAGCTTGAAATTCCGAAATTTTGGCAGTTTCTGCCACAAAAACCTCATCTCATTGAAATTGGGAAGGATTAGTAGAAARCAATTGGTGTCCCACACATACTCAGAAAAAGGGTCCACCCGATGAAAAAAGAAAAATTAAAACGGATAGAGAGTATCCGAGCCCGGAGCCCGGGTCGCATTTCAAAGGGGACTACGACAGGTGGCACTATTCGGCGGATACGTGACTCATTGATTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9191</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>537620</contig_pos>
        <strand></strand>
        <context>GCTTGAAATT[C/T]CGAAATTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGGGTAGAGAGGGGTACGGTGTGTGAGGAATTTTTAAAAGCTTGAAATT</left_flank>
        <right_flank>CGAAATTTTGGCAGTTTCTGCCACAAAAACCTCATCTCATTGAAATTGGG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAAAGGGACAGACAAATTTTAAACAAATTAGAATTCAAAAATTCAGAAAAGGGCTCTTTTCCCCTTCTGCTCCGTTTTGTGCATCTTTTCCGCTTTCTCCAAAATAGGCCACGCCCCCTTTTTAAGGGGAGGGGCCTCTCTTTTTGGGGTGCCCTTTTTGGAGCACTTAAATTAACGAAAATGGGAATTTTTGAGGATTACTGTAGCCAAGTGTACAGTACTTGGGATTACTGTGCCGATCATACAGTCTCGATGTATACCACATCCCGTATTTCCTACGCCAACTTTGAGCTCAATTATCTCACTTCCCATGAGAGCTATCAAAATTTTGTCAACTGATAAAATGTTGTTGATATTATGATAAACAATTTATCAGTTGACAAAACTTTGATATCTTTTGTAGGAGCCGAGATAATTGAGCTCAACGTTGACAGGGGTTCTATTAGAGAGGGTAGAGAGGGGTACGGTGTGTGAGGAATTTTTAAAAGCTTGAAATTCCGAAATTTTGGCAGTTTCTGCCACAAAAACCTCATCTCATTGAAATTGGGAAGGATTAGTAGAAAACAATTGGTGTCCCACACATACTCAGAAAAAGGGTCCACCCGATGAAAAAAGAAAAATTAAAACGGATAGAGAGTATCCGAGCCCGGAGCCCGGGTCGCATTTCAAAGGGGACTACGACAGGTGGCACTATTCGGCGGATACGTGACTCATTGATTGATTGGAAGAAGAGCTCCTCTAGGGGCGGAAGAAAGATAGAGTGATGGATCTACTAGGGACGGGATAGAACAACACTCTTTGGGCCTTCTTCCTTTAAAGGGACATATCTCTAAAACCAAAAAAGCAATCTGAAAGTGGTTCACTACAAAAATGTAAAGCATAAAATTTTGCAATTTTTGTTAGTTGGTCATTTTTAAAGAGCTTTCTTACTTTTTGAGATATGCGCCTTTAAATATGGGGCACCCAAGTGCCCCTCCCTTTTGTTGCGAGCTGTGTGA</canonical>
            <polymorphic>TTTAAAGGGACAGACAAATTTTAAACAAATTAGAATTCAAAAATTCAGAAAAGGGCTCTTTTCCCCTTCTGCTCCGTTTTGTGCATCTTTTCCGCTTTCTCCAAAATAGGCCACGCCCCCTTTTTAAGGGGAGGGGCCTCTCTTTTTGGGGTGCCCTTTTTGGAGCACTTAAATTAACGAAAATGGGAATTTTTGAGGATTACTGTAGCCAAGTGTACAGTACTTGGGATTACTGTGCCGATCATACAGTCTCGATGTATACCACATCCCGTATTTCCTACGCCAACTTTGAGCTCAATTATCTCACTTCCCATGAGAGCTATCAAAATTTTGTCAACTGATAAAATGTTGTTGATATTATGATAAACAATTTATCAGTTGACAAAACTTTGATATCTTTTGTAGGAGCCGAGATAATTGAGCTCAACGTTGACAGGGGTTCTATTAGAGAGGGTAGAGAGGGGTACGGTGTGTGAGGAATTTTTAAAAGCTTGAAATTYCGAAATTTTGGCAGTTTCTGCCACAAAAACCTCATCTCATTGAAATTGGGAAGGATTAGTAGAAAACAATTGGTGTCCCACACATACTCAGAAAAAGGGTCCACCCGATGAAAAAAGAAAAATTAAAACGGATAGAGAGTATCCGAGCCCGGAGCCCGGGTCGCATTTCAAAGGGGACTACGACAGGTGGCACTATTCGGCGGATACGTGACTCATTGATTGATTGGAAGAAGAGCTCCTCTAGGGGCGGAAGAAAGATAGAGTGATGGATCTACTAGGGACGGGATAGAACAACACTCTTTGGGCCTTCTTCCTTTAAAGGGACATATCTCTAAAACCAAAAAAGCAATCTGAAAGTGGTTCACTACAAAAATGTAAAGCATAAAATTTTGCAATTTTTGTTAGTTGGTCATTTTTAAAGAGCTTTCTTACTTTTTGAGATATGCGCCTTTAAATATGGGGCACCCAAGTGCCCCTCCCTTTTGTTGCGAGCTGTGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>382 152 146 139 115 17 17 16 8 8</canonical_bands>
                <polymorphic_bands>382 152 146 139 115 25 17 16 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>454 208 148 89 54 47</canonical_bands>
                <polymorphic_bands>543 208 148 54 47</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTATACCACATCCCGTATTT</pcr_primer_p1>
		<pcr_primer_p2>TACTAATCCTTCCCAATTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>306</pcr_amplicon_size>
		<canonical_amplicon>TGTATACCACATCCCGTATTTCCTACGCCAACTTTGAGCTCAATTATCTCACTTCCCATGAGAGCTATCAAAATTTTGTCAACTGATAAAATGTTGTTGATATTATGATAAACAATTTATCAGTTGACAAAACTTTGATATCTTTTGTAGGAGCCGAGATAATTGAGCTCAACGTTGACAGGGGTTCTATTAGAGAGGGTAGAGAGGGGTACGGTGTGTGAGGAATTTTTAAAAGCTTGAAATTCCGAAATTTTGGCAGTTTCTGCCACAAAAACCTCATCTCATTGAAATTGGGAAGGATTAGTA</canonical_amplicon>
		<polymorphic_amplicon>TGTATACCACATCCCGTATTTCCTACGCCAACTTTGAGCTCAATTATCTCACTTCCCATGAGAGCTATCAAAATTTTGTCAACTGATAAAATGTTGTTGATATTATGATAAACAATTTATCAGTTGACAAAACTTTGATATCTTTTGTAGGAGCCGAGATAATTGAGCTCAACGTTGACAGGGGTTCTATTAGAGAGGGTAGAGAGGGGTACGGTGTGTGAGGAATTTTTAAAAGCTTGAAATTYCGAAATTTTGGCAGTTTCTGCCACAAAAACCTCATCTCATTGAAATTGGGAAGGATTAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9192</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>27273</contig_pos>
        <strand>+</strand>
        <context>GTTCATTTTC[C/T]AACTTGATCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAGGCGTATTCCTTAATGTGAATTTCTATAAAATTATTGGTTCATTTTC</left_flank>
        <right_flank>AACTTGATCCTAATTTCAGGAACCGCAATATGACTGAATGATCGTAATTT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTTTCTCAATTATCTCGGTTCCTGTAAAAGATATCAAAAATTTGTCAACTGATAAAATGTTCATCATAATGTCACTAATATTTTTGTAGTTTACAAATTAATGATATCTCTTATAGGAACTGAGATAACAGATCTCGAAAAGCAATGACAGGAATTTCAGCTTTTGAGAAATCAAAAAATTTAGCAAAATCTCAATAAATAAAATTTCAGAACAGTACCCTTAAAGAACGTTGACATCGTTACCAGACTAGTTCAGGTAGGTCAAAACAAAATGTATCGAAAAAAATGTGCATCAATTTTCAGAGGTATTCTACTCTTCCAGTAGAAGATATTGCATAGAGAGCGGGGCACCGTAAGTCGGTTTCTTTTTTTTGAATTCATCGAACTTCTGAAATTTGCGGGAAATATATAAATACCTCGAGGTATTCCCAAACAAACGAGAATCCAGAGGCGTATTCCTTAATGTGAATTTCTATAAAATTATTGGTTCATTTTCCAACTTGATCCTAATTTCAGGAACCGCAATATGACTGAATGATCGTAATTTTTTTTTTGGATTTTTAAAATTAATTTTTTAAAAATAAATTTGTAACTATCTCGAAGACACTGTGTTTTTTGCTTGCATTTCAGGTGGTTCGGAAAGCCGAAGATTTGAGGAGGGTCTGTAAACCCGAAATTCTGAAATTCGTTTTTTTTCTCCATGTGATTTTTTATTTAAATTCAATTCATATATAAATCATTTTAGTCATAATAAAACTGTTGTTTTTCATTTTGAAAAATCATTTTAAAAATCGTTGACAAGGTTTTCTAGTTTGTTCATCCTTCAAGATTGACTTTGGTATAAAGGCTAGTAGTAGCTAGCTCTTTAGTATGGTGGACAATCGACGTGGTTCAGTGGATAAATATGGTTTTATTGAATAATCAGGTTGAATAAAATAAAAGAATGCAAAGTACAGTAAAAAGGGAATGGGTATAAAGGCCACTAGTAGGTGGCTCT</canonical>
            <polymorphic>CATTTTTCTCAATTATCTCGGTTCCTGTAAAAGATATCAAAAATTTGTCAACTGATAAAATGTTCATCATAATGTCACTAATATTTTTGTAGTTTACAAATTAATGATATCTCTTATAGGAACTGAGATAACAGATCTCGAAAAGCAATGACAGGAATTTCAGCTTTTGAGAAATCAAAAAATTTAGCAAAATCTCAATAAATAAAATTTCAGAACAGTACCCTTAAAGAACGTTGACATCGTTACCAGACTAGTTCAGGTAGGTCAAAACAAAATGTATCGAAAAAAATGTGCATCAATTTTCAGAGGTATTCTACTCTTCCAGTAGAAGATATTGCATAGAGAGCGGGGCACCGTAAGTCGGTTTCTTTTTTTTGAATTCATCGAACTTCTGAAATTTGCGGGAAATATATAAATACCTCGAGGTATTCCCAAACAAACGAGAATCCAGAGGCGTATTCCTTAATGTGAATTTCTATAAAATTATTGGTTCATTTTCYAACTTGATCCTAATTTCAGGAACCGCAATATGACTGAATGATCGTAATTTTTTTTTTGGATTTTTAAAATTAATTTTTTAAAAATAAATTTGTAACTATCTCGAAGACACTGTGTTTTTTGCTTGCATTTCAGGTGGTTCGGAAAGCCGAAGATTTGAGGAGGGTCTGTAAACCCGAAATTCTGAAATTCGTTTTTTTTCTCCATGTGATTTTTTATTTAAATTCAATTCATATATAAATCATTTTAGTCATAATAAAACTGTTGTTTTTCATTTTGAAAAATCATTTTAAAAATCGTTGACAAGGTTTTCTAGTTTGTTCATCCTTCAAGATTGACTTTGGTATAAAGGCTAGTAGTAGCTAGCTCTTTAGTATGGTGGACAATCGACGTGGTTCAGTGGATAAATATGGTTTTATTGAATAATCAGGTTGAATAAAATAAAAGAATGCAAAGTACAGTAAAAAGGGAATGGGTATAAAGGCCACTAGTAGGTGGCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAATTCATCGAACTTCTG</pcr_primer_p1>
		<pcr_primer_p2>AACACAGTGTCTTCGAGATAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTGAATTCATCGAACTTCTGAAATTTGCGGGAAATATATAAATACCTCGAGGTATTCCCAAACAAACGAGAATCCAGAGGCGTATTCCTTAATGTGAATTTCTATAAAATTATTGGTTCATTTTCCAACTTGATCCTAATTTCAGGAACCGCAATATGACTGAATGATCGTAATTTTTTTTTTGGATTTTTAAAATTAATTTTTTAAAAATAAATTTGTAACTATCTCGAAGACACTGTGTT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAATTCATCGAACTTCTGAAATTTGCGGGAAATATATAAATACCTCGAGGTATTCCCAAACAAACGAGAATCCAGAGGCGTATTCCTTAATGTGAATTTCTATAAAATTATTGGTTCATTTTCYAACTTGATCCTAATTTCAGGAACCGCAATATGACTGAATGATCGTAATTTTTTTTTTGGATTTTTAAAATTAATTTTTTAAAAATAAATTTGTAACTATCTCGAAGACACTGTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9194</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>30449</contig_pos>
        <strand>+</strand>
        <context>CTGTTCATAA[C/T]TGCGAATATC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTTTTATTTGTTAGAATCTCATCAACTTCTTGAGTGCCCTGTTCATAA</left_flank>
        <right_flank>TGCGAATATCAACTCCAGGTATCTTTCCACACTTTTCAAGACATTCTTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTATACTCTTCCGAACTTCAAAGTGTCGTTCACTACAGCTCGAACTACGCGGTTGCCAATCTACATATAACAGAACACCTCTTCTATCCACACTTTCAATTTTGACCTAATCTATCTCGTCTTCTGTTAAAGATATCGAAAAGTTATAAACTGACAAAAACAGTTAGAGGAGCCCTTCTATCACAGGTTTCGTAATTCACCTGTAATCCTATCCTCTTCTGGTTCATTGTCCACATTAAGAAGGGGATAATCAATAAGATGCGTACGTCCTAATTCTTTCAAAATGTCTTCCGACAAATTCAGCTCAAACTTTCGATTCAACGATCGTTCGGCCAGAACTTGGCTCCGAGAGTATGACGGTAAAACTATTTCGTTTTCTGAAAACCACTCGACTTGAAACTTAATCTGAATCTGAGCTAACCTTCAAGCATCTTCTCCTTCTTCTGCTCTTTTTTATTTGTTAGAATCTCATCAACTTCTTGAGTGCCCTGTTCATAATTGCGAATATCAACTCCAGGTATCTTTCCACACTTTTCAAGACATTCTTGAAGTTTTCGGCACCAGAATTCAAAGGAACGCAGTGAGACACTATAGTTCTTCATATACAAAGTATGAAAGGAGCCGAATAAATGTTCCATCAGGTGTTTTGGTGTCTCTTTACAAATTCGGCAGATTGGCTGAAAGATTTTCAGAAAGTTCAAAAAGGTTCTAGTTACTTTCAGATTTCTGATAGTCCCACCTGTGTTCTCTTGAAACCATTCCCTTTGTATCCTCTGTCCAGATACTCAAAATATTCAGCATAGTCCGAATTCCAATTTCGGAGCACCCATGTTTGTCTCAGCTTATGAAACTCTTTCAGAACCTTGTTTACTGCAATCCATATTTTCAAAACTTGCAGGAGCAAGATGAAAGGGTGTCAAAGGTTTACCTGTAATCATATCCTCTTCGTTTTCCACATTAAGAAGGGGATAATCAATAAGGTCCATAAGTCCCACCTCT</canonical>
            <polymorphic>ATTATACTCTTCCGAACTTCAAAGTGTCGTTCACTACAGCTCGAACTACGCGGTTGCCAATCTACATATAACAGAACACCTCTTCTATCCACACTTTCAATTTTGACCTAATCTATCTCGTCTTCTGTTAAAGATATCGAAAAGTTATAAACTGACAAAAACAGTTAGAGGAGCCCTTCTATCACAGGTTTCGTAATTCACCTGTAATCCTATCCTCTTCTGGTTCATTGTCCACATTAAGAAGGGGATAATCAATAAGATGCGTACGTCCTAATTCTTTCAAAATGTCTTCCGACAAATTCAGCTCAAACTTTCGATTCAACGATCGTTCGGCCAGAACTTGGCTCCGAGAGTATGACGGTAAAACTATTTCGTTTTCTGAAAACCACTCGACTTGAAACTTAATCTGAATCTGAGCTAACCTTCAAGCATCTTCTCCTTCTTCTGCTCTTTTTTATTTGTTAGAATCTCATCAACTTCTTGAGTGCCCTGTTCATAAYTGCGAATATCAACTCCAGGTATCTTTCCACACTTTTCAAGACATTCTTGAAGTTTTCGGCACCAGAATTCAAAGGAACGCAGTGAGACACTATAGTTCTTCATATACAAAGTATGAAAGGAGCCGAATAAATGTTCCATCAGGTGTTTTGGTGTCTCTTTACAAATTCGGCAGATTGGCTGAAAGATTTTCAGAAAGTTCAAAAAGGTTCTAGTTACTTTCAGATTTCTGATAGTCCCACCTGTGTTCTCTTGAAACCATTCCCTTTGTATCCTCTGTCCAGATACTCAAAATATTCAGCATAGTCCGAATTCCAATTTCGGAGCACCCATGTTTGTCTCAGCTTATGAAACTCTTTCAGAACCTTGTTTACTGCAATCCATATTTTCAAAACTTGCAGGAGCAAGATGAAAGGGTGTCAAAGGTTTACCTGTAATCATATCCTCTTCGTTTTCCACATTAAGAAGGGGATAATCAATAAGGTCCATAAGTCCCACCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>200 186 145 98 98 96 78 68 25 6</canonical_bands>
                <polymorphic_bands>268 186 145 98 98 96 78 25 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTAATCTGAATCTGAGCTAACC</pcr_primer_p1>
		<pcr_primer_p2>AAACACCTGATGGAACATTTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTTAATCTGAATCTGAGCTAACCTTCAAGCATCTTCTCCTTCTTCTGCTCTTTTTTATTTGTTAGAATCTCATCAACTTCTTGAGTGCCCTGTTCATAATTGCGAATATCAACTCCAGGTATCTTTCCACACTTTTCAAGACATTCTTGAAGTTTTCGGCACCAGAATTCAAAGGAACGCAGTGAGACACTATAGTTCTTCATATACAAAGTATGAAAGGAGCCGAATAAATGTTCCATCAGGTGTTT</canonical_amplicon>
		<polymorphic_amplicon>ACTTAATCTGAATCTGAGCTAACCTTCAAGCATCTTCTCCTTCTTCTGCTCTTTTTTATTTGTTAGAATCTCATCAACTTCTTGAGTGCCCTGTTCATAAYTGCGAATATCAACTCCAGGTATCTTTCCACACTTTTCAAGACATTCTTGAAGTTTTCGGCACCAGAATTCAAAGGAACGCAGTGAGACACTATAGTTCTTCATATACAAAGTATGAAAGGAGCCGAATAAATGTTCCATCAGGTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9195</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>30465</contig_pos>
        <strand>+</strand>
        <context>ATATCAACTC[C/T]AGGTATCTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCTCATCAACTTCTTGAGTGCCCTGTTCATAATTGCGAATATCAACTC</left_flank>
        <right_flank>AGGTATCTTTCCACACTTTTCAAGACATTCTTGAAGTTTTCGGCACCAGA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCAAAGTGTCGTTCACTACAGCTCGAACTACGCGGTTGCCAATCTACATATAACAGAACACCTCTTCTATCCACACTTTCAATTTTGACCTAATCTATCTCGTCTTCTGTTAAAGATATCGAAAAGTTATAAACTGACAAAAACAGTTAGAGGAGCCCTTCTATCACAGGTTTCGTAATTCACCTGTAATCCTATCCTCTTCTGGTTCATTGTCCACATTAAGAAGGGGATAATCAATAAGATGCGTACGTCCTAATTCTTTCAAAATGTCTTCCGACAAATTCAGCTCAAACTTTCGATTCAACGATCGTTCGGCCAGAACTTGGCTCCGAGAGTATGACGGTAAAACTATTTCGTTTTCTGAAAACCACTCGACTTGAAACTTAATCTGAATCTGAGCTAACCTTCAAGCATCTTCTCCTTCTTCTGCTCTTTTTTATTTGTTAGAATCTCATCAACTTCTTGAGTGCCCTGTTCATAATTGCGAATATCAACTCCAGGTATCTTTCCACACTTTTCAAGACATTCTTGAAGTTTTCGGCACCAGAATTCAAAGGAACGCAGTGAGACACTATAGTTCTTCATATACAAAGTATGAAAGGAGCCGAATAAATGTTCCATCAGGTGTTTTGGTGTCTCTTTACAAATTCGGCAGATTGGCTGAAAGATTTTCAGAAAGTTCAAAAAGGTTCTAGTTACTTTCAGATTTCTGATAGTCCCACCTGTGTTCTCTTGAAACCATTCCCTTTGTATCCTCTGTCCAGATACTCAAAATATTCAGCATAGTCCGAATTCCAATTTCGGAGCACCCATGTTTGTCTCAGCTTATGAAACTCTTTCAGAACCTTGTTTACTGCAATCCATATTTTCAAAACTTGCAGGAGCAAGATGAAAGGGTGTCAAAGGTTTACCTGTAATCATATCCTCTTCGTTTTCCACATTAAGAAGGGGATAATCAATAAGGTCCATAAGTCCCACCTCTCTCAAAATGTCATCAG</canonical>
            <polymorphic>CTTCAAAGTGTCGTTCACTACAGCTCGAACTACGCGGTTGCCAATCTACATATAACAGAACACCTCTTCTATCCACACTTTCAATTTTGACCTAATCTATCTCGTCTTCTGTTAAAGATATCGAAAAGTTATAAACTGACAAAAACAGTTAGAGGAGCCCTTCTATCACAGGTTTCGTAATTCACCTGTAATCCTATCCTCTTCTGGTTCATTGTCCACATTAAGAAGGGGATAATCAATAAGATGCGTACGTCCTAATTCTTTCAAAATGTCTTCCGACAAATTCAGCTCAAACTTTCGATTCAACGATCGTTCGGCCAGAACTTGGCTCCGAGAGTATGACGGTAAAACTATTTCGTTTTCTGAAAACCACTCGACTTGAAACTTAATCTGAATCTGAGCTAACCTTCAAGCATCTTCTCCTTCTTCTGCTCTTTTTTATTTGTTAGAATCTCATCAACTTCTTGAGTGCCCTGTTCATAATTGCGAATATCAACTCYAGGTATCTTTCCACACTTTTCAAGACATTCTTGAAGTTTTCGGCACCAGAATTCAAAGGAACGCAGTGAGACACTATAGTTCTTCATATACAAAGTATGAAAGGAGCCGAATAAATGTTCCATCAGGTGTTTTGGTGTCTCTTTACAAATTCGGCAGATTGGCTGAAAGATTTTCAGAAAGTTCAAAAAGGTTCTAGTTACTTTCAGATTTCTGATAGTCCCACCTGTGTTCTCTTGAAACCATTCCCTTTGTATCCTCTGTCCAGATACTCAAAATATTCAGCATAGTCCGAATTCCAATTTCGGAGCACCCATGTTTGTCTCAGCTTATGAAACTCTTTCAGAACCTTGTTTACTGCAATCCATATTTTCAAAACTTGCAGGAGCAAGATGAAAGGGTGTCAAAGGTTTACCTGTAATCATATCCTCTTCGTTTTCCACATTAAGAAGGGGATAATCAATAAGGTCCATAAGTCCCACCTCTCTCAAAATGTCATCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTAATCTGAATCTGAGCTAACC</pcr_primer_p1>
		<pcr_primer_p2>AAACACCTGATGGAACATTTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTTAATCTGAATCTGAGCTAACCTTCAAGCATCTTCTCCTTCTTCTGCTCTTTTTTATTTGTTAGAATCTCATCAACTTCTTGAGTGCCCTGTTCATAATTGCGAATATCAACTCCAGGTATCTTTCCACACTTTTCAAGACATTCTTGAAGTTTTCGGCACCAGAATTCAAAGGAACGCAGTGAGACACTATAGTTCTTCATATACAAAGTATGAAAGGAGCCGAATAAATGTTCCATCAGGTGTTT</canonical_amplicon>
		<polymorphic_amplicon>ACTTAATCTGAATCTGAGCTAACCTTCAAGCATCTTCTCCTTCTTCTGCTCTTTTTTATTTGTTAGAATCTCATCAACTTCTTGAGTGCCCTGTTCATAATTGCGAATATCAACTCYAGGTATCTTTCCACACTTTTCAAGACATTCTTGAAGTTTTCGGCACCAGAATTCAAAGGAACGCAGTGAGACACTATAGTTCTTCATATACAAAGTATGAAAGGAGCCGAATAAATGTTCCATCAGGTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9210</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>107453</contig_pos>
        <strand></strand>
        <context>GCTTTTCTAA[T/C]GGATTTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTTTTTGAATCGAACTTTTCGAGAAAACATGAATTTTTTGGCTTTTCTAA</left_flank>
        <right_flank>GGATTTTTTCGGGTTTTCCGGCTATTTTAAAAGTTTTAAGACTCAATTTC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAGTTTGCATTTTTCGGCTTTTCCGGCAATTTAGACCCATTCGAATCCCAATTTGACGAAAATTTCTGAAAGTTTTCCACCAAAAAACCCAAGAATATGGTCTGGCCGAGTTTCGGAGGATTTCTAGGCCACCAGGTCGTTTTGGCTTTTTTCAAAGGAGTTTATGGCATTTTTCGGCTGTTCGGGCTATTTTAAGCGATTTCAGACAGATTTTCCTAACTAAAAACCCAAAAATACGGTGCTGGCCGAGTTTTGGGGGTTTTCTAGGCCATTCGGTCTTTTTGGTCTTTTTAGCCGATTTTTTGCAGAAAAGTTTGCATTTTCTGCTTTTCTAGCTCATTTTGACCGGTTTAACACCCAATTTTACCGAATTTTCAAACTTAAAAACCCAAAAAGTATGATGTGGTCGAGTTTTTGGGTTTTCTAGGCCACCAGCTATTTTTGGCCTTTTTGAATCGAACTTTTCGAGAAAACATGAATTTTTTGGCTTTTCTAATGGATTTTTTCGGGTTTTCCGGCTATTTTAAAAGTTTTAAGACTCAATTTCATCGAATTCTCACCTAAAAAACTGATTTCTATGCCACATTTTCATGAAAATACGAATTTCTAGCCTAGAAATTGGATTTTAGAAATTCTAGGCCACCAAAAATTGCATTATTTCTAAGCCAAAAAATACTTCATAATTTGTGTCTATTAGTAGGAAACGAAGTGGCTCAGCAAGCGGCGGAATGTCATTGGCCGATCACGTCGACGCCATCAAGAAGGAGATGGCGAGCGTCTCGGGACAACTTCAGACGAACAAGGATGCGCTGGAACGATCGCGAAACGAAGTGACCCAGCTGCAACTATCCCTTCAACAAGTCAACGATCAACAGGTGCAAACGGACATTCAGAAGGCGCACGAGACGACGGAACGGCTGAAAGCGCTGGCTGTGAAGTTCCTGGGCACGCTGTCGGATCCGAATCAGCAGAGTCAGTTGGCAGGAGAGTTTGAGCA</canonical>
            <polymorphic>GAAAAGTTTGCATTTTTCGGCTTTTCCGGCAATTTAGACCCATTCGAATCCCAATTTGACGAAAATTTCTGAAAGTTTTCCACCAAAAAACCCAAGAATATGGTCTGGCCGAGTTTCGGAGGATTTCTAGGCCACCAGGTCGTTTTGGCTTTTTTCAAAGGAGTTTATGGCATTTTTCGGCTGTTCGGGCTATTTTAAGCGATTTCAGACAGATTTTCCTAACTAAAAACCCAAAAATACGGTGCTGGCCGAGTTTTGGGGGTTTTCTAGGCCATTCGGTCTTTTTGGTCTTTTTAGCCGATTTTTTGCAGAAAAGTTTGCATTTTCTGCTTTTCTAGCTCATTTTGACCGGTTTAACACCCAATTTTACCGAATTTTCAAACTTAAAAACCCAAAAAGTATGATGTGGTCGAGTTTTTGGGTTTTCTAGGCCACCAGCTATTTTTGGCCTTTTTGAATCGAACTTTTCGAGAAAACATGAATTTTTTGGCTTTTCTAAYGGATTTTTTCGGGTTTTCCGGCTATTTTAAAAGTTTTAAGACTCAATTTCATCGAATTCTCACCTAAAAAACTGATTTCTATGCCACATTTTCATGAAAATACGAATTTCTAGCCTAGAAATTGGATTTTAGAAATTCTAGGCCACCAAAAATTGCATTATTTCTAAGCCAAAAAATACTTCATAATTTGTGTCTATTAGTAGGAAACGAAGTGGCTCAGCAAGCGGCGGAATGTCATTGGCCGATCACGTCGACGCCATCAAGAAGGAGATGGCGAGCGTCTCGGGACAACTTCAGACGAACAAGGATGCGCTGGAACGATCGCGAAACGAAGTGACCCAGCTGCAACTATCCCTTCAACAAGTCAACGATCAACAGGTGCAAACGGACATTCAGAAGGCGCACGAGACGACGGAACGGCTGAAAGCGCTGGCTGTGAAGTTCCTGGGCACGCTGTCGGATCCGAATCAGCAGAGTCAGTTGGCAGGAGAGTTTGAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCTGCTTTTCTAGCTCATT</pcr_primer_p1>
		<pcr_primer_p2>GAATTCGATGAAATTGAGTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCTGCTTTTCTAGCTCATTTTGACCGGTTTAACACCCAATTTTACCGAATTTTCAAACTTAAAAACCCAAAAAGTATGATGTGGTCGAGTTTTTGGGTTTTCTAGGCCACCAGCTATTTTTGGCCTTTTTGAATCGAACTTTTCGAGAAAACATGAATTTTTTGGCTTTTCTAATGGATTTTTTCGGGTTTTCCGGCTATTTTAAAAGTTTTAAGACTCAATTTCATCGAATTC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCTGCTTTTCTAGCTCATTTTGACCGGTTTAACACCCAATTTTACCGAATTTTCAAACTTAAAAACCCAAAAAGTATGATGTGGTCGAGTTTTTGGGTTTTCTAGGCCACCAGCTATTTTTGGCCTTTTTGAATCGAACTTTTCGAGAAAACATGAATTTTTTGGCTTTTCTAAYGGATTTTTTCGGGTTTTCCGGCTATTTTAAAAGTTTTAAGACTCAATTTCATCGAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9211</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>107596</contig_pos>
        <strand>+</strand>
        <context>AAATTCTAGG[C/T]CACCAAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATGAAAATACGAATTTCTAGCCTAGAAATTGGATTTTAGAAATTCTAGG</left_flank>
        <right_flank>CACCAAAAATTGCATTATTTCTAAGCCAAAAAATACTTCATAATTTGTGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGGCTTTTTTCAAAGGAGTTTATGGCATTTTTCGGCTGTTCGGGCTATTTTAAGCGATTTCAGACAGATTTTCCTAACTAAAAACCCAAAAATACGGTGCTGGCCGAGTTTTGGGGGTTTTCTAGGCCATTCGGTCTTTTTGGTCTTTTTAGCCGATTTTTTGCAGAAAAGTTTGCATTTTCTGCTTTTCTAGCTCATTTTGACCGGTTTAACACCCAATTTTACCGAATTTTCAAACTTAAAAACCCAAAAAGTATGATGTGGTCGAGTTTTTGGGTTTTCTAGGCCACCAGCTATTTTTGGCCTTTTTGAATCGAACTTTTCGAGAAAACATGAATTTTTTGGCTTTTCTAATGGATTTTTTCGGGTTTTCCGGCTATTTTAAAAGTTTTAAGACTCAATTTCATCGAATTCTCACCTAAAAAACTGATTTCTATGCCACATTTTCATGAAAATACGAATTTCTAGCCTAGAAATTGGATTTTAGAAATTCTAGGCCACCAAAAATTGCATTATTTCTAAGCCAAAAAATACTTCATAATTTGTGTCTATTAGTAGGAAACGAAGTGGCTCAGCAAGCGGCGGAATGTCATTGGCCGATCACGTCGACGCCATCAAGAAGGAGATGGCGAGCGTCTCGGGACAACTTCAGACGAACAAGGATGCGCTGGAACGATCGCGAAACGAAGTGACCCAGCTGCAACTATCCCTTCAACAAGTCAACGATCAACAGGTGCAAACGGACATTCAGAAGGCGCACGAGACGACGGAACGGCTGAAAGCGCTGGCTGTGAAGTTCCTGGGCACGCTGTCGGATCCGAATCAGCAGAGTCAGTTGGCAGGAGAGTTTGAGCAGCTGATAGCCAAGTCTGGAGCCGCCTCTGGCGGACCCCAAATGGCTCAAATGCCCCAGATGATGGCCGCTGCGATGCAGCCGCACATGATGATGAGAAATCCGATGTTGAACGCAATGACACAAGGATCGCCACGTGGCGTAC</canonical>
            <polymorphic>TTTGGCTTTTTTCAAAGGAGTTTATGGCATTTTTCGGCTGTTCGGGCTATTTTAAGCGATTTCAGACAGATTTTCCTAACTAAAAACCCAAAAATACGGTGCTGGCCGAGTTTTGGGGGTTTTCTAGGCCATTCGGTCTTTTTGGTCTTTTTAGCCGATTTTTTGCAGAAAAGTTTGCATTTTCTGCTTTTCTAGCTCATTTTGACCGGTTTAACACCCAATTTTACCGAATTTTCAAACTTAAAAACCCAAAAAGTATGATGTGGTCGAGTTTTTGGGTTTTCTAGGCCACCAGCTATTTTTGGCCTTTTTGAATCGAACTTTTCGAGAAAACATGAATTTTTTGGCTTTTCTAATGGATTTTTTCGGGTTTTCCGGCTATTTTAAAAGTTTTAAGACTCAATTTCATCGAATTCTCACCTAAAAAACTGATTTCTATGCCACATTTTCATGAAAATACGAATTTCTAGCCTAGAAATTGGATTTTAGAAATTCTAGGYCACCAAAAATTGCATTATTTCTAAGCCAAAAAATACTTCATAATTTGTGTCTATTAGTAGGAAACGAAGTGGCTCAGCAAGCGGCGGAATGTCATTGGCCGATCACGTCGACGCCATCAAGAAGGAGATGGCGAGCGTCTCGGGACAACTTCAGACGAACAAGGATGCGCTGGAACGATCGCGAAACGAAGTGACCCAGCTGCAACTATCCCTTCAACAAGTCAACGATCAACAGGTGCAAACGGACATTCAGAAGGCGCACGAGACGACGGAACGGCTGAAAGCGCTGGCTGTGAAGTTCCTGGGCACGCTGTCGGATCCGAATCAGCAGAGTCAGTTGGCAGGAGAGTTTGAGCAGCTGATAGCCAAGTCTGGAGCCGCCTCTGGCGGACCCCAAATGGCTCAAATGCCCCAGATGATGGCCGCTGCGATGCAGCCGCACATGATGATGAGAAATCCGATGTTGAACGCAATGACACAAGGATCGCCACGTGGCGTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>324 194 160 105 99 78 23 17</canonical_bands>
                <polymorphic_bands>324 293 160 105 78 23 17</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>101 93 92 78 68 64 59 47 42 41 32 31 29 26 26 26 24 23 21 14 13 12 10 9 7 7 5</canonical_bands>
                <polymorphic_bands>101 93 92 78 68 64 59 55 47 42 41 32 31 26 26 24 23 21 14 13 12 10 9 7 7 5</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 194 160 128 17</canonical_bands>
                <polymorphic_bands>695 160 128 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTTTTCGAGAAAACATGAAT</pcr_primer_p1>
		<pcr_primer_p2>TCGTTTCCTACTAATAGACACAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACTTTTCGAGAAAACATGAATTTTTTGGCTTTTCTAATGGATTTTTTCGGGTTTTCCGGCTATTTTAAAAGTTTTAAGACTCAATTTCATCGAATTCTCACCTAAAAAACTGATTTCTATGCCACATTTTCATGAAAATACGAATTTCTAGCCTAGAAATTGGATTTTAGAAATTCTAGGCCACCAAAAATTGCATTATTTCTAAGCCAAAAAATACTTCATAATTTGTGTCTATTAGTAGGAAACGA</canonical_amplicon>
		<polymorphic_amplicon>AACTTTTCGAGAAAACATGAATTTTTTGGCTTTTCTAATGGATTTTTTCGGGTTTTCCGGCTATTTTAAAAGTTTTAAGACTCAATTTCATCGAATTCTCACCTAAAAAACTGATTTCTATGCCACATTTTCATGAAAATACGAATTTCTAGCCTAGAAATTGGATTTTAGAAATTCTAGGYCACCAAAAATTGCATTATTTCTAAGCCAAAAAATACTTCATAATTTGTGTCTATTAGTAGGAAACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9212</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>107630</contig_pos>
        <strand>+</strand>
        <context>AGCCAAAAAA[C/T]ACTTCATAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTAGAAATTCTAGGCCACCAAAAATTGCATTATTTCTAAGCCAAAAAA</left_flank>
        <right_flank>ACTTCATAATTTGTGTCTATTAGTAGGAAACGAAGTGGCTCAGCAAGCGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGCTGTTCGGGCTATTTTAAGCGATTTCAGACAGATTTTCCTAACTAAAAACCCAAAAATACGGTGCTGGCCGAGTTTTGGGGGTTTTCTAGGCCATTCGGTCTTTTTGGTCTTTTTAGCCGATTTTTTGCAGAAAAGTTTGCATTTTCTGCTTTTCTAGCTCATTTTGACCGGTTTAACACCCAATTTTACCGAATTTTCAAACTTAAAAACCCAAAAAGTATGATGTGGTCGAGTTTTTGGGTTTTCTAGGCCACCAGCTATTTTTGGCCTTTTTGAATCGAACTTTTCGAGAAAACATGAATTTTTTGGCTTTTCTAATGGATTTTTTCGGGTTTTCCGGCTATTTTAAAAGTTTTAAGACTCAATTTCATCGAATTCTCACCTAAAAAACTGATTTCTATGCCACATTTTCATGAAAATACGAATTTCTAGCCTAGAAATTGGATTTTAGAAATTCTAGGCCACCAAAAATTGCATTATTTCTAAGCCAAAAAATACTTCATAATTTGTGTCTATTAGTAGGAAACGAAGTGGCTCAGCAAGCGGCGGAATGTCATTGGCCGATCACGTCGACGCCATCAAGAAGGAGATGGCGAGCGTCTCGGGACAACTTCAGACGAACAAGGATGCGCTGGAACGATCGCGAAACGAAGTGACCCAGCTGCAACTATCCCTTCAACAAGTCAACGATCAACAGGTGCAAACGGACATTCAGAAGGCGCACGAGACGACGGAACGGCTGAAAGCGCTGGCTGTGAAGTTCCTGGGCACGCTGTCGGATCCGAATCAGCAGAGTCAGTTGGCAGGAGAGTTTGAGCAGCTGATAGCCAAGTCTGGAGCCGCCTCTGGCGGACCCCAAATGGCTCAAATGCCCCAGATGATGGCCGCTGCGATGCAGCCGCACATGATGATGAGAAATCCGATGTTGAACGCAATGACACAAGGATCGCCACGTGGCGTACCAGGTAATTTAGGTCGAAATTTGAAAAAAACACC</canonical>
            <polymorphic>CGGCTGTTCGGGCTATTTTAAGCGATTTCAGACAGATTTTCCTAACTAAAAACCCAAAAATACGGTGCTGGCCGAGTTTTGGGGGTTTTCTAGGCCATTCGGTCTTTTTGGTCTTTTTAGCCGATTTTTTGCAGAAAAGTTTGCATTTTCTGCTTTTCTAGCTCATTTTGACCGGTTTAACACCCAATTTTACCGAATTTTCAAACTTAAAAACCCAAAAAGTATGATGTGGTCGAGTTTTTGGGTTTTCTAGGCCACCAGCTATTTTTGGCCTTTTTGAATCGAACTTTTCGAGAAAACATGAATTTTTTGGCTTTTCTAATGGATTTTTTCGGGTTTTCCGGCTATTTTAAAAGTTTTAAGACTCAATTTCATCGAATTCTCACCTAAAAAACTGATTTCTATGCCACATTTTCATGAAAATACGAATTTCTAGCCTAGAAATTGGATTTTAGAAATTCTAGGCCACCAAAAATTGCATTATTTCTAAGCCAAAAAAYACTTCATAATTTGTGTCTATTAGTAGGAAACGAAGTGGCTCAGCAAGCGGCGGAATGTCATTGGCCGATCACGTCGACGCCATCAAGAAGGAGATGGCGAGCGTCTCGGGACAACTTCAGACGAACAAGGATGCGCTGGAACGATCGCGAAACGAAGTGACCCAGCTGCAACTATCCCTTCAACAAGTCAACGATCAACAGGTGCAAACGGACATTCAGAAGGCGCACGAGACGACGGAACGGCTGAAAGCGCTGGCTGTGAAGTTCCTGGGCACGCTGTCGGATCCGAATCAGCAGAGTCAGTTGGCAGGAGAGTTTGAGCAGCTGATAGCCAAGTCTGGAGCCGCCTCTGGCGGACCCCAAATGGCTCAAATGCCCCAGATGATGGCCGCTGCGATGCAGCCGCACATGATGATGAGAAATCCGATGTTGAACGCAATGACACAAGGATCGCCACGTGGCGTACCAGGTAATTTAGGTCGAAATTTGAAAAAAACACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTGATTTCTATGCCACAT</pcr_primer_p1>
		<pcr_primer_p2>CATCCTTGTTCGTCTGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAAACTGATTTCTATGCCACATTTTCATGAAAATACGAATTTCTAGCCTAGAAATTGGATTTTAGAAATTCTAGGCCACCAAAAATTGCATTATTTCTAAGCCAAAAAATACTTCATAATTTGTGTCTATTAGTAGGAAACGAAGTGGCTCAGCAAGCGGCGGAATGTCATTGGCCGATCACGTCGACGCCATCAAGAAGGAGATGGCGAGCGTCTCGGGACAACTTCAGACGAACAAGGATG</canonical_amplicon>
		<polymorphic_amplicon>AAAACTGATTTCTATGCCACATTTTCATGAAAATACGAATTTCTAGCCTAGAAATTGGATTTTAGAAATTCTAGGCCACCAAAAATTGCATTATTTCTAAGCCAAAAAAYACTTCATAATTTGTGTCTATTAGTAGGAAACGAAGTGGCTCAGCAAGCGGCGGAATGTCATTGGCCGATCACGTCGACGCCATCAAGAAGGAGATGGCGAGCGTCTCGGGACAACTTCAGACGAACAAGGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9213</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>110762</contig_pos>
        <strand>+</strand>
        <context>AGCCTACAAG[C/T]GGTCCAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCTAATTCCTAAAAAAAGCTTTTGAAAGAGCCTTAAAAAGCCTACAAG</left_flank>
        <right_flank>GGTCCAAAAAGACAAGAAAAAAATTGAAAAATCAAAAAATCATTTCACAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCTCTCAACCCCCACTCTCTCTCCGTTTTTCAACTGAAAATTATCGATTTCTAAGAAGCCCCGCCCACTTTTTTCTTATTTAAAATTATTGACTTTTGGCTATTTTTATACCTATCGATCTCCCTAAGCCCCGCCCACATTTTTTTTCAGTTGAAAATTATGAAAAATCGCTTTTCTCTCGTTTCTTCTCATCCCAATTTCATTGCAGCGCGGGTACTTTTTTATTTTGTTTAATTTAATTTTTTTTTCCGAAATTCAAAATTTTTAAAAATTTCCCAGTATTTTTTGTCGTTCTCTGCATTTTTTCGCTTTTTTGAGGTTTTTTCGTCGTCCCAAAACCCCCATTATTACACGTATTTTGTCGTTCCTTCCAGTGTTTTTCTTCTTTTGTCCTCCTCATCTTTTTATGGTCCTCTGAAAATACCCCTTGTAAAATATGAATCTCTGAATCTAATTCCTAAAAAAAGCTTTTGAAAGAGCCTTAAAAAGCCTACAAGCGGTCCAAAAAGACAAGAAAAAAATTGAAAAATCAAAAAATCATTTCACAAGGAACACCGCAAAAATCACATAATCCCGACAAATACAAAAAAAATTGGAGAAAGGGGAAGAATAATTTAGAACATAGGGGAGAAGTCTACATTGGCTATGATAAGACACAAATATGGCAATATGATTTATTTAAGAGCGGCGGTGAGCTCCGGGACAGCCTTGAAGAGGTCGGCCTTGAGTCCAATGTCGGCGACCTGAAAATGATGAGCAATTTACCGTAATTCTTCTGGGATTACTGTAGTTGTGTCTACAGTAGTCGTTTTAGGAGGAAAATGTGCCGAAAAAGTTGGGAAAAATGTGCAAGAAAATTGATAAGAAAACCTCGAAAAATCGCTTTAAAGGATTCGGTCGTTCTTGGAAACTTCTAGAAAATTTTTGAAATTTTTTTGAATTAGCGCCAAACTAGAAAATTCTAGGACACCTTTATCAGAGGCTTTTGAAGCGAATTT</canonical>
            <polymorphic>GTCCTCTCAACCCCCACTCTCTCTCCGTTTTTCAACTGAAAATTATCGATTTCTAAGAAGCCCCGCCCACTTTTTTCTTATTTAAAATTATTGACTTTTGGCTATTTTTATACCTATCGATCTCCCTAAGCCCCGCCCACATTTTTTTTCAGTTGAAAATTATGAAAAATCGCTTTTCTCTCGTTTCTTCTCATCCCAATTTCATTGCAGCGCGGGTACTTTTTTATTTTGTTTAATTTAATTTTTTTTTCCGAAATTCAAAATTTTTAAAAATTTCCCAGTATTTTTTGTCGTTCTCTGCATTTTTTCGCTTTTTTGAGGTTTTTTCGTCGTCCCAAAACCCCCATTATTACACGTATTTTGTCGTTCCTTCCAGTGTTTTTCTTCTTTTGTCCTCCTCATCTTTTTATGGTCCTCTGAAAATACCCCTTGTAAAATATGAATCTCTGAATCTAATTCCTAAAAAAAGCTTTTGAAAGAGCCTTAAAAAGCCTACAAGYGGTCCAAAAAGACAAGAAAAAAATTGAAAAATCAAAAAATCATTTCACAAGGAACACCGCAAAAATCACATAATCCCGACAAATACAAAAAAAATTGGAGAAAGGGGAAGAATAATTTAGAACATAGGGGAGAAGTCTACATTGGCTATGATAAGACACAAATATGGCAATATGATTTATTTAAGAGCGGCGGTGAGCTCCGGGACAGCCTTGAAGAGGTCGGCCTTGAGTCCAATGTCGGCGACCTGAAAATGATGAGCAATTTACCGTAATTCTTCTGGGATTACTGTAGTTGTGTCTACAGTAGTCGTTTTAGGAGGAAAATGTGCCGAAAAAGTTGGGAAAAATGTGCAAGAAAATTGATAAGAAAACCTCGAAAAATCGCTTTAAAGGATTCGGTCGTTCTTGGAAACTTCTAGAAAATTTTTGAAATTTTTTTGAATTAGCGCCAAACTAGAAAATTCTAGGACACCTTTATCAGAGGCTTTTGAAGCGAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCTTGTAAAATATGAATCTCTG</pcr_primer_p1>
		<pcr_primer_p2>ATCATATTGCCATATTTGTGTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCCTTGTAAAATATGAATCTCTGAATCTAATTCCTAAAAAAAGCTTTTGAAAGAGCCTTAAAAAGCCTACAAGCGGTCCAAAAAGACAAGAAAAAAATTGAAAAATCAAAAAATCATTTCACAAGGAACACCGCAAAAATCACATAATCCCGACAAATACAAAAAAAATTGGAGAAAGGGGAAGAATAATTTAGAACATAGGGGAGAAGTCTACATTGGCTATGATAAGACACAAATATGGCAATATGAT</canonical_amplicon>
		<polymorphic_amplicon>CCCTTGTAAAATATGAATCTCTGAATCTAATTCCTAAAAAAAGCTTTTGAAAGAGCCTTAAAAAGCCTACAAGYGGTCCAAAAAGACAAGAAAAAAATTGAAAAATCAAAAAATCATTTCACAAGGAACACCGCAAAAATCACATAATCCCGACAAATACAAAAAAAATTGGAGAAAGGGGAAGAATAATTTAGAACATAGGGGAGAAGTCTACATTGGCTATGATAAGACACAAATATGGCAATATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9214</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>110530</contig_pos>
        <strand>+</strand>
        <context>TCAAAATTTT[A/T]AAAAATTTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTTTTTTATTTTGTTTAATTTAATTTTTTTTTCCGAAATTCAAAATTTT</left_flank>
        <right_flank>AAAAATTTCCCAGTATTTTTTGTCGTTCTCTGCATTTTTTCGCTTTTTTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGGCTGAAATTGGTCTAGAAACCCTGAAAATCCCGTTAAAAATGATCTCAAAATCCAAAAAGTCGATAGAAAGAGCGAACTGTTATGGTGGCCTAGAAAACCCAAACACTCGGCCATATGTTTTTTTTCGATTGTTAAATTTTTGAAAAAAATTCAGTCATTTTTTACCGAATTTTCGCCCCCCTCAAATCACTCGAATATTGGCTCCGCCCCTTTTTTTCCTAAATACTGGTCCTCTCAACCCCCACTCTCTCTCCGTTTTTCAACTGAAAATTATCGATTTCTAAGAAGCCCCGCCCACTTTTTTCTTATTTAAAATTATTGACTTTTGGCTATTTTTATACCTATCGATCTCCCTAAGCCCCGCCCACATTTTTTTTCAGTTGAAAATTATGAAAAATCGCTTTTCTCTCGTTTCTTCTCATCCCAATTTCATTGCAGCGCGGGTACTTTTTTATTTTGTTTAATTTAATTTTTTTTTCCGAAATTCAAAATTTTTAAAAATTTCCCAGTATTTTTTGTCGTTCTCTGCATTTTTTCGCTTTTTTGAGGTTTTTTCGTCGTCCCAAAACCCCCATTATTACACGTATTTTGTCGTTCCTTCCAGTGTTTTTCTTCTTTTGTCCTCCTCATCTTTTTATGGTCCTCTGAAAATACCCCTTGTAAAATATGAATCTCTGAATCTAATTCCTAAAAAAAGCTTTTGAAAGAGCCTTAAAAAGCCTACAAGCGGTCCAAAAAGACAAGAAAAAAATTGAAAAATCAAAAAATCATTTCACAAGGAACACCGCAAAAATCACATAATCCCGACAAATACAAAAAAAATTGGAGAAAGGGGAAGAATAATTTAGAACATAGGGGAGAAGTCTACATTGGCTATGATAAGACACAAATATGGCAATATGATTTATTTAAGAGCGGCGGTGAGCTCCGGGACAGCCTTGAAGAGGTCGGCCTTGAGTCCAATGTCGGCGACCTGAAAATGATGAGCAATTTACC</canonical>
            <polymorphic>TCGGCTGAAATTGGTCTAGAAACCCTGAAAATCCCGTTAAAAATGATCTCAAAATCCAAAAAGTCGATAGAAAGAGCGAACTGTTATGGTGGCCTAGAAAACCCAAACACTCGGCCATATGTTTTTTTTCGATTGTTAAATTTTTGAAAAAAATTCAGTCATTTTTTACCGAATTTTCGCCCCCCTCAAATCACTCGAATATTGGCTCCGCCCCTTTTTTTCCTAAATACTGGTCCTCTCAACCCCCACTCTCTCTCCGTTTTTCAACTGAAAATTATCGATTTCTAAGAAGCCCCGCCCACTTTTTTCTTATTTAAAATTATTGACTTTTGGCTATTTTTATACCTATCGATCTCCCTAAGCCCCGCCCACATTTTTTTTCAGTTGAAAATTATGAAAAATCGCTTTTCTCTCGTTTCTTCTCATCCCAATTTCATTGCAGCGCGGGTACTTTTTTATTTTGTTTAATTTAATTTTTTTTTCCGAAATTCAAAATTTTWAAAAATTTCCCAGTATTTTTTGTCGTTCTCTGCATTTTTTCGCTTTTTTGAGGTTTTTTCGTCGTCCCAAAACCCCCATTATTACACGTATTTTGTCGTTCCTTCCAGTGTTTTTCTTCTTTTGTCCTCCTCATCTTTTTATGGTCCTCTGAAAATACCCCTTGTAAAATATGAATCTCTGAATCTAATTCCTAAAAAAAGCTTTTGAAAGAGCCTTAAAAAGCCTACAAGCGGTCCAAAAAGACAAGAAAAAAATTGAAAAATCAAAAAATCATTTCACAAGGAACACCGCAAAAATCACATAATCCCGACAAATACAAAAAAAATTGGAGAAAGGGGAAGAATAATTTAGAACATAGGGGAGAAGTCTACATTGGCTATGATAAGACACAAATATGGCAATATGATTTATTTAAGAGCGGCGGTGAGCTCCGGGACAGCCTTGAAGAGGTCGGCCTTGAGTCCAATGTCGGCGACCTGAAAATGATGAGCAATTTACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 315 185</canonical_bands>
                <polymorphic_bands>685 315</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>217 197 178 151 99 87 37 29 5</canonical_bands>
                <polymorphic_bands>246 197 178 151 99 87 37 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTCTCGTTTCTTCTCATC</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAGAGGACCATAAAAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTCTCGTTTCTTCTCATCCCAATTTCATTGCAGCGCGGGTACTTTTTTATTTTGTTTAATTTAATTTTTTTTTCCGAAATTCAAAATTTTTAAAAATTTCCCAGTATTTTTTGTCGTTCTCTGCATTTTTTCGCTTTTTTGAGGTTTTTTCGTCGTCCCAAAACCCCCATTATTACACGTATTTTGTCGTTCCTTCCAGTGTTTTTCTTCTTTTGTCCTCCTCATCTTTTTATGGTCCTCTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTCTCGTTTCTTCTCATCCCAATTTCATTGCAGCGCGGGTACTTTTTTATTTTGTTTAATTTAATTTTTTTTTCCGAAATTCAAAATTTTWAAAAATTTCCCAGTATTTTTTGTCGTTCTCTGCATTTTTTCGCTTTTTTGAGGTTTTTTCGTCGTCCCAAAACCCCCATTATTACACGTATTTTGTCGTTCCTTCCAGTGTTTTTCTTCTTTTGTCCTCCTCATCTTTTTATGGTCCTCTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9246</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>110357</contig_pos>
        <strand></strand>
        <context>AAATTATTGA[C/T]YTTTGGCTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCGATTTCTAAGAAGCCCCGCCCACTTTTTTCTTATTTAAAATTATTGA</left_flank>
        <right_flank>TTTTGGCTATTTTTATACCTATCGATCTCCCTAAGCCCCGCCCACATTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGGTGTGGCTGCTGCTGCCGCAGTCACCACGGCGGCCGCCTCGATCAAGCAAGAGGAGAATTCGACGGTCGCCGTCGCATAGTCACTTTATCGATTTTTTTCTCTTCTCTTGTTTCTAGTTGTTTTCTCTTGTTTTTTTTTTACGATTTTTGAGTGATTTTAGGCGAAAATTCGGCTGAAATTGGTCTAGAAACCCTGAAAATCCCGTTAAAAATGATCTCAAAATCCAAAAAGTCGATAGAAAGAGCGAACTGTTATGGTGGCCTAGAAAACCCAAACACTCGGCCATATGTTTTTTTTCGATTGTTAAATTTTTGAAAAAAATTCAGTCATTTTTTACCGAATTTTCGCCCCCCTCAAATCACTCGAATATTGGCTCCGCCCCTTTTTTTCCTAAATACTGGTCCTCTCAACCCCCACTCTCTCTCCGTTTTTCAACTGAAAATTATCGATTTCTAAGAAGCCCCGCCCACTTTTTTCTTATTTAAAATTATTGACTTTTGGCTATTTTTATACCTATCGATCTCCCTAAGCCCCGCCCACATTTTTTTTCAGTTGAAAATTATGAAAAATCGCTTTTCTCTCGTTTCTTCTCATCCCAATTTCATTGCAGCGCGGGTACTTTTTTATTTTGTTTAATTTAATTTTTTTTTCCGAAATTCAAAATTTTTAAAAATTTCCCAGTATTTTTTGTCGTTCTCTGCATTTTTTCGCTTTTTTGAGGTTTTTTCGTCGTCCCAAAACCCCCATTATTACACGTATTTTGTCGTTCCTTCCAGTGTTTTTCTTCTTTTGTCCTCCTCATCTTTTTATGGTCCTCTGAAAATACCCCTTGTAAAATATGAATCTCTGAATCTAATTCCTAAAAAAAGCTTTTGAAAGAGCCTTAAAAAGCCTACAAGCGGTCCAAAAAGACAAGAAAAAAATTGAAAAATCAAAAAATCATTTCACAAGGAACACCGCAAAAATCACATAATCCCGACAAATACAAAAAAAAT</canonical>
            <polymorphic>AACGGTGTGGCTGCTGCTGCCGCAGTCACCACGGCGGCCGCCTCGATCAAGCAAGAGGAGAATTCGACGGTCGCCGTCGCATAGTCACTTTATCGATTTTTTTCTCTTCTCTTGTTTCTAGTTGTTTTCTCTTGTTTTTTTTTTACGATTTTTGAGTGATTTTAGGCGAAAATTCGGCTGAAATTGGTCTAGAAACCCTGAAAATCCCGTTAAAAATGATCTCAAAATCCAAAAAGTCGATAGAAAGAGCGAACTGTTATGGTGGCCTAGAAAACCCAAACACTCGGCCATATGTTTTTTTTCGATTGTTAAATTTTTGAAAAAAATTCAGTCATTTTTTACCGAATTTTCGCCCCCCTCAAATCACTCGAATATTGGCTCCGCCCCTTTTTTTCCTAAATACTGGTCCTCTCAACCCCCACTCTCTCTCCGTTTTTCAACTGAAAATTATCGATTTCTAAGAAGCCCCGCCCACTTTTTTCTTATTTAAAATTATTGAYTTTTGGCTATTTTTATACCTATCGATCTCCCTAAGCCCCGCCCACATTTTTTTTCAGTTGAAAATTATGAAAAATCGCTTTTCTCTCGTTTCTTCTCATCCCAATTTCATTGCAGCGCGGGTACTTTTTTATTTTGTTTAATTTAATTTTTTTTTCCGAAATTCAAAATTTTTAAAAATTTCCCAGTATTTTTTGTCGTTCTCTGCATTTTTTCGCTTTTTTGAGGTTTTTTCGTCGTCCCAAAACCCCCATTATTACACGTATTTTGTCGTTCCTTCCAGTGTTTTTCTTCTTTTGTCCTCCTCATCTTTTTATGGTCCTCTGAAAATACCCCTTGTAAAATATGAATCTCTGAATCTAATTCCTAAAAAAAGCTTTTGAAAGAGCCTTAAAAAGCCTACAAGCGGTCCAAAAAGACAAGAAAAAAATTGAAAAATCAAAAAATCATTTCACAAGGAACACCGCAAAAATCACATAATCCCGACAAATACAAAAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCCTAAATACTGGTCCTCT</pcr_primer_p1>
		<pcr_primer_p2>GAAATTGGGATGAGAAGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>219</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCCTAAATACTGGTCCTCTCAACCCCCACTCTCTCTCCGTTTTTCAACTGAAAATTATCGATTTCTAAGAAGCCCCGCCCACTTTTTTCTTATTTAAAATTATTGACTTTTGGCTATTTTTATACCTATCGATCTCCCTAAGCCCCGCCCACATTTTTTTTCAGTTGAAAATTATGAAAAATCGCTTTTCTCTCGTTTCTTCTCATCCCAATTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCCTAAATACTGGTCCTCTCAACCCCCACTCTCTCTCCGTTTTTCAACTGAAAATTATCGATTTCTAAGAAGCCCCGCCCACTTTTTTCTTATTTAAAATTATTGAYTTTTGGCTATTTTTATACCTATCGATCTCCCTAAGCCCCGCCCACATTTTTTTTCAGTTGAAAATTATGAAAAATCGCTTTTCTCTCGTTTCTTCTCATCCCAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9262</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>126467</contig_pos>
        <strand></strand>
        <context>aaaaagtgtg[G/A]atttttatrc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTTGGTTCCTATAAGAGGTATCACAAATTGGTAAACTAAAAAAAAGTGTG</left_flank>
        <right_flank>ATTTTTATACTTTATATTTTTTCAGTTAACTTTTTTCTGGTAGCTGTCAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTCTTCTTCTCTCTATACATCCCTTTCTCTTCTTCTAATACCGTCGGTCCAATGTTATGTATGTGTCTTCTGGGGTGGCTTCTCATATCTCGTTTCAAATCATCATCTTCTTCTTCTTCACCACTACCTCTTCTTCTTCTCTTTTCTCGGGAGAGGCGATTCTCGTACGTATTACATGTAATTATGATTCATTTATCTCCCATTATTATTATTCCAATCAATTCGAATACTACCCGCGCATGTTTTAGTTAGCCCAATTTATCTAGGTTCCTGTAAGAGGTATCAAGAAGTGGTCAACTGATAAAATGCTGCTGATTTTATGATAAACAATTTGTTAGTTAACAACTTCTTTATATCTTTCAAAGAAACCGAGATAAATTGGGTTGAACATGAAAGCGCGCGCAAATATGTGCGCAATGCCTAGGCTCTAACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGGTATCACAAATTGGTAAACTAAAAAAAAGTGTGGATTTTTATACTTTATATTTTTTCAGTTAACTTTTTTCTGGTAGCTGTCATAGAAAACGAGATAAATTGAGGAAAACTTTGCAACTATATAAGGGAATCCTATTTTTGGTTTATTTCCCTTTAAACTTGACATTTTTGAATGATCAATATTTTTGAATGATCGAAATTGCAGAATGAGCATTTTTGTAGCTCAAAAATTAGATGTTTCATTATGACCACTTTTAAGAACCGTTCATTTTTCTTGCAGCAATCAACATGCCTCGGTGGCTCCTACTTACAAGATCACTGCACATTTGGACCCATAATTTTCTTCAAACTTTATATTTTCTAATGTTTTAAATTGGAAAATGTAGATCTTGAAATTCTCTACAAACTAATATATAACACATTGTGATTACATAACTCCTAACGTTGATTATCAATGGTTGATAAGAACCTTGTAATTAGCCAATTACTACGACTTTTGAGCTTCAGTTAGTTGAGAACTTATAGTTTGCTTCA</canonical>
            <polymorphic>CTCTCTTCTTCTCTCTATACATCCCTTTCTCTTCTTCTAATACCGTCGGTCCAATGTTATGTATGTGTCTTCTGGGGTGGCTTCTCATATCTCGTTTCAAATCATCATCTTCTTCTTCTTCACCACTACCTCTTCTTCTTCTCTTTTCTCGGGAGAGGCGATTCTCGTACGTATTACATGTAATTATGATTCATTTATCTCCCATTATTATTATTCCAATCAATTCGAATACTACCCGCGCATGTTTTAGTTAGCCCAATTTATCTAGGTTCCTGTAAGAGGTATCAAGAAGTGGTCAACTGATAAAATGCTGCTGATTTTATGATAAACAATTTGTTAGTTAACAACTTCTTTATATCTTTCAAAGAAACCGAGATAAATTGGGTTGAACATGAAAGCGCGCGCAAATATGTGCGCAATGCCTAGGCTCTAACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGGTATCACAAATTGGTAAACTAAAAAAAAGTGTGRATTTTTATACTTTATATTTTTTCAGTTAACTTTTTTCTGGTAGCTGTCATAGAAAACGAGATAAATTGAGGAAAACTTTGCAACTATATAAGGGAATCCTATTTTTGGTTTATTTCCCTTTAAACTTGACATTTTTGAATGATCAATATTTTTGAATGATCGAAATTGCAGAATGAGCATTTTTGTAGCTCAAAAATTAGATGTTTCATTATGACCACTTTTAAGAACCGTTCATTTTTCTTGCAGCAATCAACATGCCTCGGTGGCTCCTACTTACAAGATCACTGCACATTTGGACCCATAATTTTCTTCAAACTTTATATTTTCTAATGTTTTAAATTGGAAAATGTAGATCTTGAAATTCTCTACAAACTAATATATAACACATTGTGATTACATAACTCCTAACGTTGATTATCAATGGTTGATAAGAACCTTGTAATTAGCCAATTACTACGACTTTTGAGCTTCAGTTAGTTGAGAACTTATAGTTTGCTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAATCAATTCGAATACTACC</pcr_primer_p1>
		<pcr_primer_p2>ATTCCCTTATATAGTTGCAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>383</pcr_amplicon_size>
		<canonical_amplicon>TCCAATCAATTCGAATACTACCCGCGCATGTTTTAGTTAGCCCAATTTATCTAGGTTCCTGTAAGAGGTATCAAGAAGTGGTCAACTGATAAAATGCTGCTGATTTTATGATAAACAATTTGTTAGTTAACAACTTCTTTATATCTTTCAAAGAAACCGAGATAAATTGGGTTGAACATGAAAGCGCGCGCAAATATGTGCGCAATGCCTAGGCTCTAACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGGTATCACAAATTGGTAAACTAAAAAAAAGTGTGGATTTTTATACTTTATATTTTTTCAGTTAACTTTTTTCTGGTAGCTGTCATAGAAAACGAGATAAATTGAGGAAAACTTTGCAACTATATAAGGGAAT</canonical_amplicon>
		<polymorphic_amplicon>TCCAATCAATTCGAATACTACCCGCGCATGTTTTAGTTAGCCCAATTTATCTAGGTTCCTGTAAGAGGTATCAAGAAGTGGTCAACTGATAAAATGCTGCTGATTTTATGATAAACAATTTGTTAGTTAACAACTTCTTTATATCTTTCAAAGAAACCGAGATAAATTGGGTTGAACATGAAAGCGCGCGCAAATATGTGCGCAATGCCTAGGCTCTAACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGGTATCACAAATTGGTAAACTAAAAAAAAGTGTGRATTTTTATACTTTATATTTTTTCAGTTAACTTTTTTCTGGTAGCTGTCATAGAAAACGAGATAAATTGAGGAAAACTTTGCAACTATATAAGGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9263</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>126476</contig_pos>
        <strand></strand>
        <context>gratttttat[A/G]ctttatattt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATAAGAGGTATCACAAATTGGTAAACTAAAAAAAAGTGTGGATTTTTAT</left_flank>
        <right_flank>CTTTATATTTTTTCAGTTAACTTTTTTCTGGTAGCTGTCATAGAAAACGA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCTCTATACATCCCTTTCTCTTCTTCTAATACCGTCGGTCCAATGTTATGTATGTGTCTTCTGGGGTGGCTTCTCATATCTCGTTTCAAATCATCATCTTCTTCTTCTTCACCACTACCTCTTCTTCTTCTCTTTTCTCGGGAGAGGCGATTCTCGTACGTATTACATGTAATTATGATTCATTTATCTCCCATTATTATTATTCCAATCAATTCGAATACTACCCGCGCATGTTTTAGTTAGCCCAATTTATCTAGGTTCCTGTAAGAGGTATCAAGAAGTGGTCAACTGATAAAATGCTGCTGATTTTATGATAAACAATTTGTTAGTTAACAACTTCTTTATATCTTTCAAAGAAACCGAGATAAATTGGGTTGAACATGAAAGCGCGCGCAAATATGTGCGCAATGCCTAGGCTCTAACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGGTATCACAAATTGGTAAACTAAAAAAAAGTGTGGATTTTTATACTTTATATTTTTTCAGTTAACTTTTTTCTGGTAGCTGTCATAGAAAACGAGATAAATTGAGGAAAACTTTGCAACTATATAAGGGAATCCTATTTTTGGTTTATTTCCCTTTAAACTTGACATTTTTGAATGATCAATATTTTTGAATGATCGAAATTGCAGAATGAGCATTTTTGTAGCTCAAAAATTAGATGTTTCATTATGACCACTTTTAAGAACCGTTCATTTTTCTTGCAGCAATCAACATGCCTCGGTGGCTCCTACTTACAAGATCACTGCACATTTGGACCCATAATTTTCTTCAAACTTTATATTTTCTAATGTTTTAAATTGGAAAATGTAGATCTTGAAATTCTCTACAAACTAATATATAACACATTGTGATTACATAACTCCTAACGTTGATTATCAATGGTTGATAAGAACCTTGTAATTAGCCAATTACTACGACTTTTGAGCTTCAGTTAGTTGAGAACTTATAGTTTGCTTCAAAATCAACA</canonical>
            <polymorphic>TCTCTCTATACATCCCTTTCTCTTCTTCTAATACCGTCGGTCCAATGTTATGTATGTGTCTTCTGGGGTGGCTTCTCATATCTCGTTTCAAATCATCATCTTCTTCTTCTTCACCACTACCTCTTCTTCTTCTCTTTTCTCGGGAGAGGCGATTCTCGTACGTATTACATGTAATTATGATTCATTTATCTCCCATTATTATTATTCCAATCAATTCGAATACTACCCGCGCATGTTTTAGTTAGCCCAATTTATCTAGGTTCCTGTAAGAGGTATCAAGAAGTGGTCAACTGATAAAATGCTGCTGATTTTATGATAAACAATTTGTTAGTTAACAACTTCTTTATATCTTTCAAAGAAACCGAGATAAATTGGGTTGAACATGAAAGCGCGCGCAAATATGTGCGCAATGCCTAGGCTCTAACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGGTATCACAAATTGGTAAACTAAAAAAAAGTGTGGATTTTTATRCTTTATATTTTTTCAGTTAACTTTTTTCTGGTAGCTGTCATAGAAAACGAGATAAATTGAGGAAAACTTTGCAACTATATAAGGGAATCCTATTTTTGGTTTATTTCCCTTTAAACTTGACATTTTTGAATGATCAATATTTTTGAATGATCGAAATTGCAGAATGAGCATTTTTGTAGCTCAAAAATTAGATGTTTCATTATGACCACTTTTAAGAACCGTTCATTTTTCTTGCAGCAATCAACATGCCTCGGTGGCTCCTACTTACAAGATCACTGCACATTTGGACCCATAATTTTCTTCAAACTTTATATTTTCTAATGTTTTAAATTGGAAAATGTAGATCTTGAAATTCTCTACAAACTAATATATAACACATTGTGATTACATAACTCCTAACGTTGATTATCAATGGTTGATAAGAACCTTGTAATTAGCCAATTACTACGACTTTTGAGCTTCAGTTAGTTGAGAACTTATAGTTTGCTTCAAAATCAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAATCAATTCGAATACTACC</pcr_primer_p1>
		<pcr_primer_p2>ATTCCCTTATATAGTTGCAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>383</pcr_amplicon_size>
		<canonical_amplicon>TCCAATCAATTCGAATACTACCCGCGCATGTTTTAGTTAGCCCAATTTATCTAGGTTCCTGTAAGAGGTATCAAGAAGTGGTCAACTGATAAAATGCTGCTGATTTTATGATAAACAATTTGTTAGTTAACAACTTCTTTATATCTTTCAAAGAAACCGAGATAAATTGGGTTGAACATGAAAGCGCGCGCAAATATGTGCGCAATGCCTAGGCTCTAACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGGTATCACAAATTGGTAAACTAAAAAAAAGTGTGGATTTTTATACTTTATATTTTTTCAGTTAACTTTTTTCTGGTAGCTGTCATAGAAAACGAGATAAATTGAGGAAAACTTTGCAACTATATAAGGGAAT</canonical_amplicon>
		<polymorphic_amplicon>TCCAATCAATTCGAATACTACCCGCGCATGTTTTAGTTAGCCCAATTTATCTAGGTTCCTGTAAGAGGTATCAAGAAGTGGTCAACTGATAAAATGCTGCTGATTTTATGATAAACAATTTGTTAGTTAACAACTTCTTTATATCTTTCAAAGAAACCGAGATAAATTGGGTTGAACATGAAAGCGCGCGCAAATATGTGCGCAATGCCTAGGCTCTAACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGGTATCACAAATTGGTAAACTAAAAAAAAGTGTGGATTTTTATRCTTTATATTTTTTCAGTTAACTTTTTTCTGGTAGCTGTCATAGAAAACGAGATAAATTGAGGAAAACTTTGCAACTATATAAGGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9264</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>126490</contig_pos>
        <strand></strand>
        <context>tatatttttt[C/T]agttaacttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAATTGGTAAACTAAAAAAAAGTGTGGATTTTTATACTTTATATTTTTT</left_flank>
        <right_flank>AGTTAACTTTTTTCTGGTAGCTGTCATAGAAAACGAGATAAATTGAGGAA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTTCTCTTCTTCTAATACCGTCGGTCCAATGTTATGTATGTGTCTTCTGGGGTGGCTTCTCATATCTCGTTTCAAATCATCATCTTCTTCTTCTTCACCACTACCTCTTCTTCTTCTCTTTTCTCGGGAGAGGCGATTCTCGTACGTATTACATGTAATTATGATTCATTTATCTCCCATTATTATTATTCCAATCAATTCGAATACTACCCGCGCATGTTTTAGTTAGCCCAATTTATCTAGGTTCCTGTAAGAGGTATCAAGAAGTGGTCAACTGATAAAATGCTGCTGATTTTATGATAAACAATTTGTTAGTTAACAACTTCTTTATATCTTTCAAAGAAACCGAGATAAATTGGGTTGAACATGAAAGCGCGCGCAAATATGTGCGCAATGCCTAGGCTCTAACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGGTATCACAAATTGGTAAACTAAAAAAAAGTGTGGATTTTTATACTTTATATTTTTTCAGTTAACTTTTTTCTGGTAGCTGTCATAGAAAACGAGATAAATTGAGGAAAACTTTGCAACTATATAAGGGAATCCTATTTTTGGTTTATTTCCCTTTAAACTTGACATTTTTGAATGATCAATATTTTTGAATGATCGAAATTGCAGAATGAGCATTTTTGTAGCTCAAAAATTAGATGTTTCATTATGACCACTTTTAAGAACCGTTCATTTTTCTTGCAGCAATCAACATGCCTCGGTGGCTCCTACTTACAAGATCACTGCACATTTGGACCCATAATTTTCTTCAAACTTTATATTTTCTAATGTTTTAAATTGGAAAATGTAGATCTTGAAATTCTCTACAAACTAATATATAACACATTGTGATTACATAACTCCTAACGTTGATTATCAATGGTTGATAAGAACCTTGTAATTAGCCAATTACTACGACTTTTGAGCTTCAGTTAGTTGAGAACTTATAGTTTGCTTCAAAATCAACATTTTCAAAGAAATC</canonical>
            <polymorphic>CCTTTCTCTTCTTCTAATACCGTCGGTCCAATGTTATGTATGTGTCTTCTGGGGTGGCTTCTCATATCTCGTTTCAAATCATCATCTTCTTCTTCTTCACCACTACCTCTTCTTCTTCTCTTTTCTCGGGAGAGGCGATTCTCGTACGTATTACATGTAATTATGATTCATTTATCTCCCATTATTATTATTCCAATCAATTCGAATACTACCCGCGCATGTTTTAGTTAGCCCAATTTATCTAGGTTCCTGTAAGAGGTATCAAGAAGTGGTCAACTGATAAAATGCTGCTGATTTTATGATAAACAATTTGTTAGTTAACAACTTCTTTATATCTTTCAAAGAAACCGAGATAAATTGGGTTGAACATGAAAGCGCGCGCAAATATGTGCGCAATGCCTAGGCTCTAACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGGTATCACAAATTGGTAAACTAAAAAAAAGTGTGGATTTTTATACTTTATATTTTTTYAGTTAACTTTTTTCTGGTAGCTGTCATAGAAAACGAGATAAATTGAGGAAAACTTTGCAACTATATAAGGGAATCCTATTTTTGGTTTATTTCCCTTTAAACTTGACATTTTTGAATGATCAATATTTTTGAATGATCGAAATTGCAGAATGAGCATTTTTGTAGCTCAAAAATTAGATGTTTCATTATGACCACTTTTAAGAACCGTTCATTTTTCTTGCAGCAATCAACATGCCTCGGTGGCTCCTACTTACAAGATCACTGCACATTTGGACCCATAATTTTCTTCAAACTTTATATTTTCTAATGTTTTAAATTGGAAAATGTAGATCTTGAAATTCTCTACAAACTAATATATAACACATTGTGATTACATAACTCCTAACGTTGATTATCAATGGTTGATAAGAACCTTGTAATTAGCCAATTACTACGACTTTTGAGCTTCAGTTAGTTGAGAACTTATAGTTTGCTTCAAAATCAACATTTTCAAAGAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAATCAATTCGAATACTACC</pcr_primer_p1>
		<pcr_primer_p2>ATTCCCTTATATAGTTGCAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>383</pcr_amplicon_size>
		<canonical_amplicon>TCCAATCAATTCGAATACTACCCGCGCATGTTTTAGTTAGCCCAATTTATCTAGGTTCCTGTAAGAGGTATCAAGAAGTGGTCAACTGATAAAATGCTGCTGATTTTATGATAAACAATTTGTTAGTTAACAACTTCTTTATATCTTTCAAAGAAACCGAGATAAATTGGGTTGAACATGAAAGCGCGCGCAAATATGTGCGCAATGCCTAGGCTCTAACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGGTATCACAAATTGGTAAACTAAAAAAAAGTGTGGATTTTTATACTTTATATTTTTTCAGTTAACTTTTTTCTGGTAGCTGTCATAGAAAACGAGATAAATTGAGGAAAACTTTGCAACTATATAAGGGAAT</canonical_amplicon>
		<polymorphic_amplicon>TCCAATCAATTCGAATACTACCCGCGCATGTTTTAGTTAGCCCAATTTATCTAGGTTCCTGTAAGAGGTATCAAGAAGTGGTCAACTGATAAAATGCTGCTGATTTTATGATAAACAATTTGTTAGTTAACAACTTCTTTATATCTTTCAAAGAAACCGAGATAAATTGGGTTGAACATGAAAGCGCGCGCAAATATGTGCGCAATGCCTAGGCTCTAACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGGTATCACAAATTGGTAAACTAAAAAAAAGTGTGGATTTTTATACTTTATATTTTTTYAGTTAACTTTTTTCTGGTAGCTGTCATAGAAAACGAGATAAATTGAGGAAAACTTTGCAACTATATAAGGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9265</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>126652</contig_pos>
        <strand>+</strand>
        <context>GAGCATTTTT[A/G]TAGCTCAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAATGATCAATATTTTTGAATGATCGAAATTGCAGAATGAGCATTTTT</left_flank>
        <right_flank>TAGCTCAAAAATTAGATGTTTCATTATGACCACTTTTAAGAACCGTTCAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGATTCATTTATCTCCCATTATTATTATTCCAATCAATTCGAATACTACCCGCGCATGTTTTAGTTAGCCCAATTTATCTAGGTTCCTGTAAGAGGTATCAAGAAGTGGTCAACTGATAAAATGCTGCTGATTTTATGATAAACAATTTGTTAGTTAACAACTTCTTTATATCTTTCAAAGAAACCGAGATAAATTGGGTTGAACATGAAAGCGCGCGCAAATATGTGCGCAATGCCTAGGCTCTAACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGGTATCACAAATTGGTAAACTAAAAAAAAGTGTGGATTTTTATACTTTATATTTTTTCAGTTAACTTTTTTCTGGTAGCTGTCATAGAAAACGAGATAAATTGAGGAAAACTTTGCAACTATATAAGGGAATCCTATTTTTGGTTTATTTCCCTTTAAACTTGACATTTTTGAATGATCAATATTTTTGAATGATCGAAATTGCAGAATGAGCATTTTTGTAGCTCAAAAATTAGATGTTTCATTATGACCACTTTTAAGAACCGTTCATTTTTCTTGCAGCAATCAACATGCCTCGGTGGCTCCTACTTACAAGATCACTGCACATTTGGACCCATAATTTTCTTCAAACTTTATATTTTCTAATGTTTTAAATTGGAAAATGTAGATCTTGAAATTCTCTACAAACTAATATATAACACATTGTGATTACATAACTCCTAACGTTGATTATCAATGGTTGATAAGAACCTTGTAATTAGCCAATTACTACGACTTTTGAGCTTCAGTTAGTTGAGAACTTATAGTTTGCTTCAAAATCAACATTTTCAAAGAAATCAAAATGGAAAACGTAGATCTTAAAATTCTCTACAAACTGATATGTAACACATTACTATTGTAAAATATCAGAATATTATGAGATCTTGAAATTCTCTACAAAATGATATATCAAATCGTATATCGCTCATCACCCAGCTGAGCTACGCTGTTGCAAGCGTTA</canonical>
            <polymorphic>ATGATTCATTTATCTCCCATTATTATTATTCCAATCAATTCGAATACTACCCGCGCATGTTTTAGTTAGCCCAATTTATCTAGGTTCCTGTAAGAGGTATCAAGAAGTGGTCAACTGATAAAATGCTGCTGATTTTATGATAAACAATTTGTTAGTTAACAACTTCTTTATATCTTTCAAAGAAACCGAGATAAATTGGGTTGAACATGAAAGCGCGCGCAAATATGTGCGCAATGCCTAGGCTCTAACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGGTATCACAAATTGGTAAACTAAAAAAAAGTGTGGATTTTTATACTTTATATTTTTTCAGTTAACTTTTTTCTGGTAGCTGTCATAGAAAACGAGATAAATTGAGGAAAACTTTGCAACTATATAAGGGAATCCTATTTTTGGTTTATTTCCCTTTAAACTTGACATTTTTGAATGATCAATATTTTTGAATGATCGAAATTGCAGAATGAGCATTTTTRTAGCTCAAAAATTAGATGTTTCATTATGACCACTTTTAAGAACCGTTCATTTTTCTTGCAGCAATCAACATGCCTCGGTGGCTCCTACTTACAAGATCACTGCACATTTGGACCCATAATTTTCTTCAAACTTTATATTTTCTAATGTTTTAAATTGGAAAATGTAGATCTTGAAATTCTCTACAAACTAATATATAACACATTGTGATTACATAACTCCTAACGTTGATTATCAATGGTTGATAAGAACCTTGTAATTAGCCAATTACTACGACTTTTGAGCTTCAGTTAGTTGAGAACTTATAGTTTGCTTCAAAATCAACATTTTCAAAGAAATCAAAATGGAAAACGTAGATCTTAAAATTCTCTACAAACTGATATGTAACACATTACTATTGTAAAATATCAGAATATTATGAGATCTTGAAATTCTCTACAAAATGATATATCAAATCGTATATCGCTCATCACCCAGCTGAGCTACGCTGTTGCAAGCGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTTTATTTCCCTTTAAACTT</pcr_primer_p1>
		<pcr_primer_p2>ATCATTTTGTAGAGAATTTCAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>526</pcr_amplicon_size>
		<canonical_amplicon>TTGGTTTATTTCCCTTTAAACTTGACATTTTTGAATGATCAATATTTTTGAATGATCGAAATTGCAGAATGAGCATTTTTGTAGCTCAAAAATTAGATGTTTCATTATGACCACTTTTAAGAACCGTTCATTTTTCTTGCAGCAATCAACATGCCTCGGTGGCTCCTACTTACAAGATCACTGCACATTTGGACCCATAATTTTCTTCAAACTTTATATTTTCTAATGTTTTAAATTGGAAAATGTAGATCTTGAAATTCTCTACAAACTAATATATAACACATTGTGATTACATAACTCCTAACGTTGATTATCAATGGTTGATAAGAACCTTGTAATTAGCCAATTACTACGACTTTTGAGCTTCAGTTAGTTGAGAACTTATAGTTTGCTTCAAAATCAACATTTTCAAAGAAATCAAAATGGAAAACGTAGATCTTAAAATTCTCTACAAACTGATATGTAACACATTACTATTGTAAAATATCAGAATATTATGAGATCTTGAAATTCTCTACAAAATGAT</canonical_amplicon>
		<polymorphic_amplicon>TTGGTTTATTTCCCTTTAAACTTGACATTTTTGAATGATCAATATTTTTGAATGATCGAAATTGCAGAATGAGCATTTTTRTAGCTCAAAAATTAGATGTTTCATTATGACCACTTTTAAGAACCGTTCATTTTTCTTGCAGCAATCAACATGCCTCGGTGGCTCCTACTTACAAGATCACTGCACATTTGGACCCATAATTTTCTTCAAACTTTATATTTTCTAATGTTTTAAATTGGAAAATGTAGATCTTGAAATTCTCTACAAACTAATATATAACACATTGTGATTACATAACTCCTAACGTTGATTATCAATGGTTGATAAGAACCTTGTAATTAGCCAATTACTACGACTTTTGAGCTTCAGTTAGTTGAGAACTTATAGTTTGCTTCAAAATCAACATTTTCAAAGAAATCAAAATGGAAAACGTAGATCTTAAAATTCTCTACAAACTGATATGTAACACATTACTATTGTAAAATATCAGAATATTATGAGATCTTGAAATTCTCTACAAAATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9266</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>126670</contig_pos>
        <strand>+</strand>
        <context>AAAATTAGAT[G/T]TTTYATTATG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAATGATCGAAATTGCAGAATGAGCATTTTTGTAGCTCAAAAATTAGAT</left_flank>
        <right_flank>TTTCATTATGACCACTTTTAAGAACCGTTCATTTTTCTTGCAGCAATCAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATTATTATTCCAATCAATTCGAATACTACCCGCGCATGTTTTAGTTAGCCCAATTTATCTAGGTTCCTGTAAGAGGTATCAAGAAGTGGTCAACTGATAAAATGCTGCTGATTTTATGATAAACAATTTGTTAGTTAACAACTTCTTTATATCTTTCAAAGAAACCGAGATAAATTGGGTTGAACATGAAAGCGCGCGCAAATATGTGCGCAATGCCTAGGCTCTAACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGGTATCACAAATTGGTAAACTAAAAAAAAGTGTGGATTTTTATACTTTATATTTTTTCAGTTAACTTTTTTCTGGTAGCTGTCATAGAAAACGAGATAAATTGAGGAAAACTTTGCAACTATATAAGGGAATCCTATTTTTGGTTTATTTCCCTTTAAACTTGACATTTTTGAATGATCAATATTTTTGAATGATCGAAATTGCAGAATGAGCATTTTTGTAGCTCAAAAATTAGATGTTTCATTATGACCACTTTTAAGAACCGTTCATTTTTCTTGCAGCAATCAACATGCCTCGGTGGCTCCTACTTACAAGATCACTGCACATTTGGACCCATAATTTTCTTCAAACTTTATATTTTCTAATGTTTTAAATTGGAAAATGTAGATCTTGAAATTCTCTACAAACTAATATATAACACATTGTGATTACATAACTCCTAACGTTGATTATCAATGGTTGATAAGAACCTTGTAATTAGCCAATTACTACGACTTTTGAGCTTCAGTTAGTTGAGAACTTATAGTTTGCTTCAAAATCAACATTTTCAAAGAAATCAAAATGGAAAACGTAGATCTTAAAATTCTCTACAAACTGATATGTAACACATTACTATTGTAAAATATCAGAATATTATGAGATCTTGAAATTCTCTACAAAATGATATATCAAATCGTATATCGCTCATCACCCAGCTGAGCTACGCTGTTGCAAGCGTTAGCTAGGAAGTCCCAATGG</canonical>
            <polymorphic>ATTATTATTATTCCAATCAATTCGAATACTACCCGCGCATGTTTTAGTTAGCCCAATTTATCTAGGTTCCTGTAAGAGGTATCAAGAAGTGGTCAACTGATAAAATGCTGCTGATTTTATGATAAACAATTTGTTAGTTAACAACTTCTTTATATCTTTCAAAGAAACCGAGATAAATTGGGTTGAACATGAAAGCGCGCGCAAATATGTGCGCAATGCCTAGGCTCTAACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGGTATCACAAATTGGTAAACTAAAAAAAAGTGTGGATTTTTATACTTTATATTTTTTCAGTTAACTTTTTTCTGGTAGCTGTCATAGAAAACGAGATAAATTGAGGAAAACTTTGCAACTATATAAGGGAATCCTATTTTTGGTTTATTTCCCTTTAAACTTGACATTTTTGAATGATCAATATTTTTGAATGATCGAAATTGCAGAATGAGCATTTTTGTAGCTCAAAAATTAGATKTTTCATTATGACCACTTTTAAGAACCGTTCATTTTTCTTGCAGCAATCAACATGCCTCGGTGGCTCCTACTTACAAGATCACTGCACATTTGGACCCATAATTTTCTTCAAACTTTATATTTTCTAATGTTTTAAATTGGAAAATGTAGATCTTGAAATTCTCTACAAACTAATATATAACACATTGTGATTACATAACTCCTAACGTTGATTATCAATGGTTGATAAGAACCTTGTAATTAGCCAATTACTACGACTTTTGAGCTTCAGTTAGTTGAGAACTTATAGTTTGCTTCAAAATCAACATTTTCAAAGAAATCAAAATGGAAAACGTAGATCTTAAAATTCTCTACAAACTGATATGTAACACATTACTATTGTAAAATATCAGAATATTATGAGATCTTGAAATTCTCTACAAAATGATATATCAAATCGTATATCGCTCATCACCCAGCTGAGCTACGCTGTTGCAAGCGTTAGCTAGGAAGTCCCAATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATGATCGAAATTGCAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATCATTTTGTAGAGAATTTCAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>477</pcr_amplicon_size>
		<canonical_amplicon>GAATGATCGAAATTGCAGAATGAGCATTTTTGTAGCTCAAAAATTAGATGTTTCATTATGACCACTTTTAAGAACCGTTCATTTTTCTTGCAGCAATCAACATGCCTCGGTGGCTCCTACTTACAAGATCACTGCACATTTGGACCCATAATTTTCTTCAAACTTTATATTTTCTAATGTTTTAAATTGGAAAATGTAGATCTTGAAATTCTCTACAAACTAATATATAACACATTGTGATTACATAACTCCTAACGTTGATTATCAATGGTTGATAAGAACCTTGTAATTAGCCAATTACTACGACTTTTGAGCTTCAGTTAGTTGAGAACTTATAGTTTGCTTCAAAATCAACATTTTCAAAGAAATCAAAATGGAAAACGTAGATCTTAAAATTCTCTACAAACTGATATGTAACACATTACTATTGTAAAATATCAGAATATTATGAGATCTTGAAATTCTCTACAAAATGAT</canonical_amplicon>
		<polymorphic_amplicon>GAATGATCGAAATTGCAGAATGAGCATTTTTGTAGCTCAAAAATTAGATKTTTCATTATGACCACTTTTAAGAACCGTTCATTTTTCTTGCAGCAATCAACATGCCTCGGTGGCTCCTACTTACAAGATCACTGCACATTTGGACCCATAATTTTCTTCAAACTTTATATTTTCTAATGTTTTAAATTGGAAAATGTAGATCTTGAAATTCTCTACAAACTAATATATAACACATTGTGATTACATAACTCCTAACGTTGATTATCAATGGTTGATAAGAACCTTGTAATTAGCCAATTACTACGACTTTTGAGCTTCAGTTAGTTGAGAACTTATAGTTTGCTTCAAAATCAACATTTTCAAAGAAATCAAAATGGAAAACGTAGATCTTAAAATTCTCTACAAACTGATATGTAACACATTACTATTGTAAAATATCAGAATATTATGAGATCTTGAAATTCTCTACAAAATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9267</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>126674</contig_pos>
        <strand>+</strand>
        <context>TTAGATKTTT[C/T]ATTATGACCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGATCGAAATTGCAGAATGAGCATTTTTGTAGCTCAAAAATTAGATGTTT</left_flank>
        <right_flank>ATTATGACCACTTTTAAGAACCGTTCATTTTTCTTGCAGCAATCAACATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATTATTCCAATCAATTCGAATACTACCCGCGCATGTTTTAGTTAGCCCAATTTATCTAGGTTCCTGTAAGAGGTATCAAGAAGTGGTCAACTGATAAAATGCTGCTGATTTTATGATAAACAATTTGTTAGTTAACAACTTCTTTATATCTTTCAAAGAAACCGAGATAAATTGGGTTGAACATGAAAGCGCGCGCAAATATGTGCGCAATGCCTAGGCTCTAACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGGTATCACAAATTGGTAAACTAAAAAAAAGTGTGGATTTTTATACTTTATATTTTTTCAGTTAACTTTTTTCTGGTAGCTGTCATAGAAAACGAGATAAATTGAGGAAAACTTTGCAACTATATAAGGGAATCCTATTTTTGGTTTATTTCCCTTTAAACTTGACATTTTTGAATGATCAATATTTTTGAATGATCGAAATTGCAGAATGAGCATTTTTGTAGCTCAAAAATTAGATGTTTCATTATGACCACTTTTAAGAACCGTTCATTTTTCTTGCAGCAATCAACATGCCTCGGTGGCTCCTACTTACAAGATCACTGCACATTTGGACCCATAATTTTCTTCAAACTTTATATTTTCTAATGTTTTAAATTGGAAAATGTAGATCTTGAAATTCTCTACAAACTAATATATAACACATTGTGATTACATAACTCCTAACGTTGATTATCAATGGTTGATAAGAACCTTGTAATTAGCCAATTACTACGACTTTTGAGCTTCAGTTAGTTGAGAACTTATAGTTTGCTTCAAAATCAACATTTTCAAAGAAATCAAAATGGAAAACGTAGATCTTAAAATTCTCTACAAACTGATATGTAACACATTACTATTGTAAAATATCAGAATATTATGAGATCTTGAAATTCTCTACAAAATGATATATCAAATCGTATATCGCTCATCACCCAGCTGAGCTACGCTGTTGCAAGCGTTAGCTAGGAAGTCCCAATGGCCGC</canonical>
            <polymorphic>TTATTATTCCAATCAATTCGAATACTACCCGCGCATGTTTTAGTTAGCCCAATTTATCTAGGTTCCTGTAAGAGGTATCAAGAAGTGGTCAACTGATAAAATGCTGCTGATTTTATGATAAACAATTTGTTAGTTAACAACTTCTTTATATCTTTCAAAGAAACCGAGATAAATTGGGTTGAACATGAAAGCGCGCGCAAATATGTGCGCAATGCCTAGGCTCTAACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGGTATCACAAATTGGTAAACTAAAAAAAAGTGTGGATTTTTATACTTTATATTTTTTCAGTTAACTTTTTTCTGGTAGCTGTCATAGAAAACGAGATAAATTGAGGAAAACTTTGCAACTATATAAGGGAATCCTATTTTTGGTTTATTTCCCTTTAAACTTGACATTTTTGAATGATCAATATTTTTGAATGATCGAAATTGCAGAATGAGCATTTTTGTAGCTCAAAAATTAGATGTTTYATTATGACCACTTTTAAGAACCGTTCATTTTTCTTGCAGCAATCAACATGCCTCGGTGGCTCCTACTTACAAGATCACTGCACATTTGGACCCATAATTTTCTTCAAACTTTATATTTTCTAATGTTTTAAATTGGAAAATGTAGATCTTGAAATTCTCTACAAACTAATATATAACACATTGTGATTACATAACTCCTAACGTTGATTATCAATGGTTGATAAGAACCTTGTAATTAGCCAATTACTACGACTTTTGAGCTTCAGTTAGTTGAGAACTTATAGTTTGCTTCAAAATCAACATTTTCAAAGAAATCAAAATGGAAAACGTAGATCTTAAAATTCTCTACAAACTGATATGTAACACATTACTATTGTAAAATATCAGAATATTATGAGATCTTGAAATTCTCTACAAAATGATATATCAAATCGTATATCGCTCATCACCCAGCTGAGCTACGCTGTTGCAAGCGTTAGCTAGGAAGTCCCAATGGCCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCGAAATTGCAGAATGAG</pcr_primer_p1>
		<pcr_primer_p2>ATCATTTTGTAGAGAATTTCAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>473</pcr_amplicon_size>
		<canonical_amplicon>GATCGAAATTGCAGAATGAGCATTTTTGTAGCTCAAAAATTAGATGTTTCATTATGACCACTTTTAAGAACCGTTCATTTTTCTTGCAGCAATCAACATGCCTCGGTGGCTCCTACTTACAAGATCACTGCACATTTGGACCCATAATTTTCTTCAAACTTTATATTTTCTAATGTTTTAAATTGGAAAATGTAGATCTTGAAATTCTCTACAAACTAATATATAACACATTGTGATTACATAACTCCTAACGTTGATTATCAATGGTTGATAAGAACCTTGTAATTAGCCAATTACTACGACTTTTGAGCTTCAGTTAGTTGAGAACTTATAGTTTGCTTCAAAATCAACATTTTCAAAGAAATCAAAATGGAAAACGTAGATCTTAAAATTCTCTACAAACTGATATGTAACACATTACTATTGTAAAATATCAGAATATTATGAGATCTTGAAATTCTCTACAAAATGAT</canonical_amplicon>
		<polymorphic_amplicon>GATCGAAATTGCAGAATGAGCATTTTTGTAGCTCAAAAATTAGATGTTTYATTATGACCACTTTTAAGAACCGTTCATTTTTCTTGCAGCAATCAACATGCCTCGGTGGCTCCTACTTACAAGATCACTGCACATTTGGACCCATAATTTTCTTCAAACTTTATATTTTCTAATGTTTTAAATTGGAAAATGTAGATCTTGAAATTCTCTACAAACTAATATATAACACATTGTGATTACATAACTCCTAACGTTGATTATCAATGGTTGATAAGAACCTTGTAATTAGCCAATTACTACGACTTTTGAGCTTCAGTTAGTTGAGAACTTATAGTTTGCTTCAAAATCAACATTTTCAAAGAAATCAAAATGGAAAACGTAGATCTTAAAATTCTCTACAAACTGATATGTAACACATTACTATTGTAAAATATCAGAATATTATGAGATCTTGAAATTCTCTACAAAATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9268</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>126705</contig_pos>
        <strand>+</strand>
        <context>CCGTTCATTT[A/T]TCTTGCAGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTCAAAAATTAGATGTTTCATTATGACCACTTTTAAGAACCGTTCATTT</left_flank>
        <right_flank>TCTTGCAGCAATCAACATGCCTCGGTGGCTCCTACTTACAAGATCACTGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCATGTTTTAGTTAGCCCAATTTATCTAGGTTCCTGTAAGAGGTATCAAGAAGTGGTCAACTGATAAAATGCTGCTGATTTTATGATAAACAATTTGTTAGTTAACAACTTCTTTATATCTTTCAAAGAAACCGAGATAAATTGGGTTGAACATGAAAGCGCGCGCAAATATGTGCGCAATGCCTAGGCTCTAACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGGTATCACAAATTGGTAAACTAAAAAAAAGTGTGGATTTTTATACTTTATATTTTTTCAGTTAACTTTTTTCTGGTAGCTGTCATAGAAAACGAGATAAATTGAGGAAAACTTTGCAACTATATAAGGGAATCCTATTTTTGGTTTATTTCCCTTTAAACTTGACATTTTTGAATGATCAATATTTTTGAATGATCGAAATTGCAGAATGAGCATTTTTGTAGCTCAAAAATTAGATGTTTCATTATGACCACTTTTAAGAACCGTTCATTTTTCTTGCAGCAATCAACATGCCTCGGTGGCTCCTACTTACAAGATCACTGCACATTTGGACCCATAATTTTCTTCAAACTTTATATTTTCTAATGTTTTAAATTGGAAAATGTAGATCTTGAAATTCTCTACAAACTAATATATAACACATTGTGATTACATAACTCCTAACGTTGATTATCAATGGTTGATAAGAACCTTGTAATTAGCCAATTACTACGACTTTTGAGCTTCAGTTAGTTGAGAACTTATAGTTTGCTTCAAAATCAACATTTTCAAAGAAATCAAAATGGAAAACGTAGATCTTAAAATTCTCTACAAACTGATATGTAACACATTACTATTGTAAAATATCAGAATATTATGAGATCTTGAAATTCTCTACAAAATGATATATCAAATCGTATATCGCTCATCACCCAGCTGAGCTACGCTGTTGCAAGCGTTAGCTAGGAAGTCCCAATGGCCGCAAGTGGCGCGATCCCTGAACACTTAAACCTA</canonical>
            <polymorphic>CGCATGTTTTAGTTAGCCCAATTTATCTAGGTTCCTGTAAGAGGTATCAAGAAGTGGTCAACTGATAAAATGCTGCTGATTTTATGATAAACAATTTGTTAGTTAACAACTTCTTTATATCTTTCAAAGAAACCGAGATAAATTGGGTTGAACATGAAAGCGCGCGCAAATATGTGCGCAATGCCTAGGCTCTAACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGGTATCACAAATTGGTAAACTAAAAAAAAGTGTGGATTTTTATACTTTATATTTTTTCAGTTAACTTTTTTCTGGTAGCTGTCATAGAAAACGAGATAAATTGAGGAAAACTTTGCAACTATATAAGGGAATCCTATTTTTGGTTTATTTCCCTTTAAACTTGACATTTTTGAATGATCAATATTTTTGAATGATCGAAATTGCAGAATGAGCATTTTTGTAGCTCAAAAATTAGATGTTTCATTATGACCACTTTTAAGAACCGTTCATTTWTCTTGCAGCAATCAACATGCCTCGGTGGCTCCTACTTACAAGATCACTGCACATTTGGACCCATAATTTTCTTCAAACTTTATATTTTCTAATGTTTTAAATTGGAAAATGTAGATCTTGAAATTCTCTACAAACTAATATATAACACATTGTGATTACATAACTCCTAACGTTGATTATCAATGGTTGATAAGAACCTTGTAATTAGCCAATTACTACGACTTTTGAGCTTCAGTTAGTTGAGAACTTATAGTTTGCTTCAAAATCAACATTTTCAAAGAAATCAAAATGGAAAACGTAGATCTTAAAATTCTCTACAAACTGATATGTAACACATTACTATTGTAAAATATCAGAATATTATGAGATCTTGAAATTCTCTACAAAATGATATATCAAATCGTATATCGCTCATCACCCAGCTGAGCTACGCTGTTGCAAGCGTTAGCTAGGAAGTCCCAATGGCCGCAAGTGGCGCGATCCCTGAACACTTAAACCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCGAAATTGCAGAATGAG</pcr_primer_p1>
		<pcr_primer_p2>ATCATTTTGTAGAGAATTTCAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>473</pcr_amplicon_size>
		<canonical_amplicon>GATCGAAATTGCAGAATGAGCATTTTTGTAGCTCAAAAATTAGATGTTTCATTATGACCACTTTTAAGAACCGTTCATTTTTCTTGCAGCAATCAACATGCCTCGGTGGCTCCTACTTACAAGATCACTGCACATTTGGACCCATAATTTTCTTCAAACTTTATATTTTCTAATGTTTTAAATTGGAAAATGTAGATCTTGAAATTCTCTACAAACTAATATATAACACATTGTGATTACATAACTCCTAACGTTGATTATCAATGGTTGATAAGAACCTTGTAATTAGCCAATTACTACGACTTTTGAGCTTCAGTTAGTTGAGAACTTATAGTTTGCTTCAAAATCAACATTTTCAAAGAAATCAAAATGGAAAACGTAGATCTTAAAATTCTCTACAAACTGATATGTAACACATTACTATTGTAAAATATCAGAATATTATGAGATCTTGAAATTCTCTACAAAATGAT</canonical_amplicon>
		<polymorphic_amplicon>GATCGAAATTGCAGAATGAGCATTTTTGTAGCTCAAAAATTAGATGTTTCATTATGACCACTTTTAAGAACCGTTCATTTWTCTTGCAGCAATCAACATGCCTCGGTGGCTCCTACTTACAAGATCACTGCACATTTGGACCCATAATTTTCTTCAAACTTTATATTTTCTAATGTTTTAAATTGGAAAATGTAGATCTTGAAATTCTCTACAAACTAATATATAACACATTGTGATTACATAACTCCTAACGTTGATTATCAATGGTTGATAAGAACCTTGTAATTAGCCAATTACTACGACTTTTGAGCTTCAGTTAGTTGAGAACTTATAGTTTGCTTCAAAATCAACATTTTCAAAGAAATCAAAATGGAAAACGTAGATCTTAAAATTCTCTACAAACTGATATGTAACACATTACTATTGTAAAATATCAGAATATTATGAGATCTTGAAATTCTCTACAAAATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9269</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>126748</contig_pos>
        <strand></strand>
        <context>tacttacaag[A/T]tcactgcaca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCATTTTTCTTGCAGCAATCAACATGCCTCGGTGGCTCCTACTTACAAG</left_flank>
        <right_flank>TCACTGCACATTTGGACCCATAATTTTCTTCAAACTTTATATTTTCTAAT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATCAAGAAGTGGTCAACTGATAAAATGCTGCTGATTTTATGATAAACAATTTGTTAGTTAACAACTTCTTTATATCTTTCAAAGAAACCGAGATAAATTGGGTTGAACATGAAAGCGCGCGCAAATATGTGCGCAATGCCTAGGCTCTAACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGGTATCACAAATTGGTAAACTAAAAAAAAGTGTGGATTTTTATACTTTATATTTTTTCAGTTAACTTTTTTCTGGTAGCTGTCATAGAAAACGAGATAAATTGAGGAAAACTTTGCAACTATATAAGGGAATCCTATTTTTGGTTTATTTCCCTTTAAACTTGACATTTTTGAATGATCAATATTTTTGAATGATCGAAATTGCAGAATGAGCATTTTTGTAGCTCAAAAATTAGATGTTTCATTATGACCACTTTTAAGAACCGTTCATTTTTCTTGCAGCAATCAACATGCCTCGGTGGCTCCTACTTACAAGATCACTGCACATTTGGACCCATAATTTTCTTCAAACTTTATATTTTCTAATGTTTTAAATTGGAAAATGTAGATCTTGAAATTCTCTACAAACTAATATATAACACATTGTGATTACATAACTCCTAACGTTGATTATCAATGGTTGATAAGAACCTTGTAATTAGCCAATTACTACGACTTTTGAGCTTCAGTTAGTTGAGAACTTATAGTTTGCTTCAAAATCAACATTTTCAAAGAAATCAAAATGGAAAACGTAGATCTTAAAATTCTCTACAAACTGATATGTAACACATTACTATTGTAAAATATCAGAATATTATGAGATCTTGAAATTCTCTACAAAATGATATATCAAATCGTATATCGCTCATCACCCAGCTGAGCTACGCTGTTGCAAGCGTTAGCTAGGAAGTCCCAATGGCCGCAAGTGGCGCGATCCCTGAACACTTAAACCTATAACTCGCCTCAAACTCAACATTTTGAAGTTGTATGAATTGCA</canonical>
            <polymorphic>GTATCAAGAAGTGGTCAACTGATAAAATGCTGCTGATTTTATGATAAACAATTTGTTAGTTAACAACTTCTTTATATCTTTCAAAGAAACCGAGATAAATTGGGTTGAACATGAAAGCGCGCGCAAATATGTGCGCAATGCCTAGGCTCTAACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGGTATCACAAATTGGTAAACTAAAAAAAAGTGTGGATTTTTATACTTTATATTTTTTCAGTTAACTTTTTTCTGGTAGCTGTCATAGAAAACGAGATAAATTGAGGAAAACTTTGCAACTATATAAGGGAATCCTATTTTTGGTTTATTTCCCTTTAAACTTGACATTTTTGAATGATCAATATTTTTGAATGATCGAAATTGCAGAATGAGCATTTTTGTAGCTCAAAAATTAGATGTTTCATTATGACCACTTTTAAGAACCGTTCATTTTTCTTGCAGCAATCAACATGCCTCGGTGGCTCCTACTTACAAGWTCACTGCACATTTGGACCCATAATTTTCTTCAAACTTTATATTTTCTAATGTTTTAAATTGGAAAATGTAGATCTTGAAATTCTCTACAAACTAATATATAACACATTGTGATTACATAACTCCTAACGTTGATTATCAATGGTTGATAAGAACCTTGTAATTAGCCAATTACTACGACTTTTGAGCTTCAGTTAGTTGAGAACTTATAGTTTGCTTCAAAATCAACATTTTCAAAGAAATCAAAATGGAAAACGTAGATCTTAAAATTCTCTACAAACTGATATGTAACACATTACTATTGTAAAATATCAGAATATTATGAGATCTTGAAATTCTCTACAAAATGATATATCAAATCGTATATCGCTCATCACCCAGCTGAGCTACGCTGTTGCAAGCGTTAGCTAGGAAGTCCCAATGGCCGCAAGTGGCGCGATCCCTGAACACTTAAACCTATAACTCGCCTCAAACTCAACATTTTGAAGTTGTATGAATTGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>359 187 122 112 72 66 65 17</canonical_bands>
                <polymorphic_bands>359 194 187 112 66 65 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCGAAATTGCAGAATGAG</pcr_primer_p1>
		<pcr_primer_p2>ATCATTTTGTAGAGAATTTCAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>473</pcr_amplicon_size>
		<canonical_amplicon>GATCGAAATTGCAGAATGAGCATTTTTGTAGCTCAAAAATTAGATGTTTCATTATGACCACTTTTAAGAACCGTTCATTTTTCTTGCAGCAATCAACATGCCTCGGTGGCTCCTACTTACAAGATCACTGCACATTTGGACCCATAATTTTCTTCAAACTTTATATTTTCTAATGTTTTAAATTGGAAAATGTAGATCTTGAAATTCTCTACAAACTAATATATAACACATTGTGATTACATAACTCCTAACGTTGATTATCAATGGTTGATAAGAACCTTGTAATTAGCCAATTACTACGACTTTTGAGCTTCAGTTAGTTGAGAACTTATAGTTTGCTTCAAAATCAACATTTTCAAAGAAATCAAAATGGAAAACGTAGATCTTAAAATTCTCTACAAACTGATATGTAACACATTACTATTGTAAAATATCAGAATATTATGAGATCTTGAAATTCTCTACAAAATGAT</canonical_amplicon>
		<polymorphic_amplicon>GATCGAAATTGCAGAATGAGCATTTTTGTAGCTCAAAAATTAGATGTTTCATTATGACCACTTTTAAGAACCGTTCATTTTTCTTGCAGCAATCAACATGCCTCGGTGGCTCCTACTTACAAGWTCACTGCACATTTGGACCCATAATTTTCTTCAAACTTTATATTTTCTAATGTTTTAAATTGGAAAATGTAGATCTTGAAATTCTCTACAAACTAATATATAACACATTGTGATTACATAACTCCTAACGTTGATTATCAATGGTTGATAAGAACCTTGTAATTAGCCAATTACTACGACTTTTGAGCTTCAGTTAGTTGAGAACTTATAGTTTGCTTCAAAATCAACATTTTCAAAGAAATCAAAATGGAAAACGTAGATCTTAAAATTCTCTACAAACTGATATGTAACACATTACTATTGTAAAATATCAGAATATTATGAGATCTTGAAATTCTCTACAAAATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9273</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>152480</contig_pos>
        <strand></strand>
        <context>GAMATTGAAA[G/T]CATGAAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATAGCTGCGATTGGAGATCTCTGCAAAACTCGAAAAGTTGACATTGAAA</left_flank>
        <right_flank>CATGAAAAATGGCTCAAAAATCATGAAAAATGCTCCTACTCTGTCCTGAA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAACTTCAGAATCTCAAAACCTCAGACTTCAAAATCTTAAGAACTAAAGTTTTCAGAATCTCAGAACTTCCGAATATCGAAATCTTCGCAATCCAAAAAAGGAACCCTACTTGAAGTCGTTCCAACCGAACATTCAACACTTGATTCGTCCTCAACACATCCTCCAACTGCTGCTGCTTCTGTAGCAACATATCCGACAACTGTGTCGTCGTTCCATCATCCTCCTGTTTCGATTGCTCATCCCTCATTCGTGCTCTCATCTCACTCATTACCTTCCGCAGCTCATTCTCCTTTTCGACTAGTTTCGCCTGATGCTGATCTCCTAGCCTCTTCATTTCTTGTTTCGTGAATTCGTTCTCGATTCTCGAACATTCCACTTTCTCATTCAGAAGGCCTATCGTACTGTCCCACGTCTGTTTCTCCTCGAGATGCGTTCGTTTTTGGTCGGATAGCTGCGATTGGAGATCTCTGCAAAACTCGAAAAGTTGACATTGAAAGCATGAAAAATGGCTCAAAAATCATGAAAAATGCTCCTACTCTGTCCTGAAAACTGTCAAAAAAGACACAGAAATTAGGTATTTTTTCTGGCTAATTTCTAGATTTTTGCACATTTTCTGCTCAATTTTAGCCGATTTGTTAGCCGGTTTTTCGCTGATTTCTACTAAATTATAGTTGGATTCTTCTCATTTTTTGATAATTTTCAGCTCATTTTTTGTTGATTTACTCCCAATTTTCAGCCTTTAATTAGGCTTAATTTCACTCGATTTCACTCGATTTCTGATTTTTTTTTCCATATTTTAAGCCTAATTTTAATCCCATTGTGTATTTTTCAGCCAATTTTGCTCAATTTTAGCTGATTTTTGTTAACCAAAGTATCACTATTTTTAGCTGTTTTCTGCTCGTTTTAGCATATTTTTAAAAACAATTTTAGAGGTCTCTGCAAAATTCGAAAAATGAATTATTCGTAGAAATCGGCATATTTTCTGACAAATTTCGAG</canonical>
            <polymorphic>CAAAACTTCAGAATCTCAAAACCTCAGACTTCAAAATCTTAAGAACTAAAGTTTTCAGAATCTCAGAACTTCCGAATATCGAAATCTTCGCAATCCAAAAAAGGAACCCTACTTGAAGTCGTTCCAACCGAACATTCAACACTTGATTCGTCCTCAACACATCCTCCAACTGCTGCTGCTTCTGTAGCAACATATCCGACAACTGTGTCGTCGTTCCATCATCCTCCTGTTTCGATTGCTCATCCCTCATTCGTGCTCTCATCTCACTCATTACCTTCCGCAGCTCATTCTCCTTTTCGACTAGTTTCGCCTGATGCTGATCTCCTAGCCTCTTCATTTCTTGTTTCGTGAATTCGTTCTCGATTCTCGAACATTCCACTTTCTCATTCAGAAGGCCTATCGTACTGTCCCACGTCTGTTTCTCCTCGAGATGCGTTCGTTTTTGGTCGGATAGCTGCGATTGGAGATCTCTGCAAAACTCGAAAAGTTGACATTGAAAKCATGAAAAATGGCTCAAAAATCATGAAAAATGCTCCTACTCTGTCCTGAAAACTGTCAAAAAAGACACAGAAATTAGGTATTTTTTCTGGCTAATTTCTAGATTTTTGCACATTTTCTGCTCAATTTTAGCCGATTTGTTAGCCGGTTTTTCGCTGATTTCTACTAAATTATAGTTGGATTCTTCTCATTTTTTGATAATTTTCAGCTCATTTTTTGTTGATTTACTCCCAATTTTCAGCCTTTAATTAGGCTTAATTTCACTCGATTTCACTCGATTTCTGATTTTTTTTTCCATATTTTAAGCCTAATTTTAATCCCATTGTGTATTTTTCAGCCAATTTTGCTCAATTTTAGCTGATTTTTGTTAACCAAAGTATCACTATTTTTAGCTGTTTTCTGCTCGTTTTAGCATATTTTTAAAAACAATTTTAGAGGTCTCTGCAAAATTCGAAAAATGAATTATTCGTAGAAATCGGCATATTTTCTGACAAATTTCGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACATTCCACTTTCTCATTCAG</pcr_primer_p1>
		<pcr_primer_p2>GAAAATGTGCAAAAATCTAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AACATTCCACTTTCTCATTCAGAAGGCCTATCGTACTGTCCCACGTCTGTTTCTCCTCGAGATGCGTTCGTTTTTGGTCGGATAGCTGCGATTGGAGATCTCTGCAAAACTCGAAAAGTTGACATTGAAAGCATGAAAAATGGCTCAAAAATCATGAAAAATGCTCCTACTCTGTCCTGAAAACTGTCAAAAAAGACACAGAAATTAGGTATTTTTTCTGGCTAATTTCTAGATTTTTGCACATTTTC</canonical_amplicon>
		<polymorphic_amplicon>AACATTCCACTTTCTCATTCAGAAGGCCTATCGTACTGTCCCACGTCTGTTTCTCCTCGAGATGCGTTCGTTTTTGGTCGGATAGCTGCGATTGGAGATCTCTGCAAAACTCGAAAAGTTGACATTGAAAKCATGAAAAATGGCTCAAAAATCATGAAAAATGCTCCTACTCTGTCCTGAAAACTGTCAAAAAAGACACAGAAATTAGGTATTTTTTCTGGCTAATTTCTAGATTTTTGCACATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9274</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>152472</contig_pos>
        <strand>+</strand>
        <context>GAAAAGTTGA[A/C]ATTGAAAKCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTGGTCGGATAGCTGCGATTGGAGATCTCTGCAAAACTCGAAAAGTTGA</left_flank>
        <right_flank>ATTGAAAGCATGAAAAATGGCTCAAAAATCATGAAAAATGCTCCTACTCT</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGGATCCCAAAACTTCAGAATCTCAAAACCTCAGACTTCAAAATCTTAAGAACTAAAGTTTTCAGAATCTCAGAACTTCCGAATATCGAAATCTTCGCAATCCAAAAAAGGAACCCTACTTGAAGTCGTTCCAACCGAACATTCAACACTTGATTCGTCCTCAACACATCCTCCAACTGCTGCTGCTTCTGTAGCAACATATCCGACAACTGTGTCGTCGTTCCATCATCCTCCTGTTTCGATTGCTCATCCCTCATTCGTGCTCTCATCTCACTCATTACCTTCCGCAGCTCATTCTCCTTTTCGACTAGTTTCGCCTGATGCTGATCTCCTAGCCTCTTCATTTCTTGTTTCGTGAATTCGTTCTCGATTCTCGAACATTCCACTTTCTCATTCAGAAGGCCTATCGTACTGTCCCACGTCTGTTTCTCCTCGAGATGCGTTCGTTTTTGGTCGGATAGCTGCGATTGGAGATCTCTGCAAAACTCGAAAAGTTGACATTGAAAGCATGAAAAATGGCTCAAAAATCATGAAAAATGCTCCTACTCTGTCCTGAAAACTGTCAAAAAAGACACAGAAATTAGGTATTTTTTCTGGCTAATTTCTAGATTTTTGCACATTTTCTGCTCAATTTTAGCCGATTTGTTAGCCGGTTTTTCGCTGATTTCTACTAAATTATAGTTGGATTCTTCTCATTTTTTGATAATTTTCAGCTCATTTTTTGTTGATTTACTCCCAATTTTCAGCCTTTAATTAGGCTTAATTTCACTCGATTTCACTCGATTTCTGATTTTTTTTTCCATATTTTAAGCCTAATTTTAATCCCATTGTGTATTTTTCAGCCAATTTTGCTCAATTTTAGCTGATTTTTGTTAACCAAAGTATCACTATTTTTAGCTGTTTTCTGCTCGTTTTAGCATATTTTTAAAAACAATTTTAGAGGTCTCTGCAAAATTCGAAAAATGAATTATTCGTAGAAATCGGCATATTTTCTGACAA</canonical>
            <polymorphic>CGGGATCCCAAAACTTCAGAATCTCAAAACCTCAGACTTCAAAATCTTAAGAACTAAAGTTTTCAGAATCTCAGAACTTCCGAATATCGAAATCTTCGCAATCCAAAAAAGGAACCCTACTTGAAGTCGTTCCAACCGAACATTCAACACTTGATTCGTCCTCAACACATCCTCCAACTGCTGCTGCTTCTGTAGCAACATATCCGACAACTGTGTCGTCGTTCCATCATCCTCCTGTTTCGATTGCTCATCCCTCATTCGTGCTCTCATCTCACTCATTACCTTCCGCAGCTCATTCTCCTTTTCGACTAGTTTCGCCTGATGCTGATCTCCTAGCCTCTTCATTTCTTGTTTCGTGAATTCGTTCTCGATTCTCGAACATTCCACTTTCTCATTCAGAAGGCCTATCGTACTGTCCCACGTCTGTTTCTCCTCGAGATGCGTTCGTTTTTGGTCGGATAGCTGCGATTGGAGATCTCTGCAAAACTCGAAAAGTTGAMATTGAAAGCATGAAAAATGGCTCAAAAATCATGAAAAATGCTCCTACTCTGTCCTGAAAACTGTCAAAAAAGACACAGAAATTAGGTATTTTTTCTGGCTAATTTCTAGATTTTTGCACATTTTCTGCTCAATTTTAGCCGATTTGTTAGCCGGTTTTTCGCTGATTTCTACTAAATTATAGTTGGATTCTTCTCATTTTTTGATAATTTTCAGCTCATTTTTTGTTGATTTACTCCCAATTTTCAGCCTTTAATTAGGCTTAATTTCACTCGATTTCACTCGATTTCTGATTTTTTTTTCCATATTTTAAGCCTAATTTTAATCCCATTGTGTATTTTTCAGCCAATTTTGCTCAATTTTAGCTGATTTTTGTTAACCAAAGTATCACTATTTTTAGCTGTTTTCTGCTCGTTTTAGCATATTTTTAAAAACAATTTTAGAGGTCTCTGCAAAATTCGAAAAATGAATTATTCGTAGAAATCGGCATATTTTCTGACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>497 378 125</canonical_bands>
                <polymorphic_bands>875 125</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>497 378 125</canonical_bands>
                <polymorphic_bands>875 125</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACATTCCACTTTCTCATTCAG</pcr_primer_p1>
		<pcr_primer_p2>GAAAATGTGCAAAAATCTAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AACATTCCACTTTCTCATTCAGAAGGCCTATCGTACTGTCCCACGTCTGTTTCTCCTCGAGATGCGTTCGTTTTTGGTCGGATAGCTGCGATTGGAGATCTCTGCAAAACTCGAAAAGTTGACATTGAAAGCATGAAAAATGGCTCAAAAATCATGAAAAATGCTCCTACTCTGTCCTGAAAACTGTCAAAAAAGACACAGAAATTAGGTATTTTTTCTGGCTAATTTCTAGATTTTTGCACATTTTC</canonical_amplicon>
		<polymorphic_amplicon>AACATTCCACTTTCTCATTCAGAAGGCCTATCGTACTGTCCCACGTCTGTTTCTCCTCGAGATGCGTTCGTTTTTGGTCGGATAGCTGCGATTGGAGATCTCTGCAAAACTCGAAAAGTTGAMATTGAAAGCATGAAAAATGGCTCAAAAATCATGAAAAATGCTCCTACTCTGTCCTGAAAACTGTCAAAAAAGACACAGAAATTAGGTATTTTTTCTGGCTAATTTCTAGATTTTTGCACATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9275</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>152447</contig_pos>
        <strand>+</strand>
        <context>GCGATTGGAG[A/G]TCTCTGCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTTCTCCTCGAGATGCGTTCGTTTTTGGTCGGATAGCTGCGATTGGAG</left_flank>
        <right_flank>TCTCTGCAAAACTCGAAAAGTTGACATTGAAAGCATGAAAAATGGCTCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGGATTTCAGAACCTGACACTATCGGGATCCCAAAACTTCAGAATCTCAAAACCTCAGACTTCAAAATCTTAAGAACTAAAGTTTTCAGAATCTCAGAACTTCCGAATATCGAAATCTTCGCAATCCAAAAAAGGAACCCTACTTGAAGTCGTTCCAACCGAACATTCAACACTTGATTCGTCCTCAACACATCCTCCAACTGCTGCTGCTTCTGTAGCAACATATCCGACAACTGTGTCGTCGTTCCATCATCCTCCTGTTTCGATTGCTCATCCCTCATTCGTGCTCTCATCTCACTCATTACCTTCCGCAGCTCATTCTCCTTTTCGACTAGTTTCGCCTGATGCTGATCTCCTAGCCTCTTCATTTCTTGTTTCGTGAATTCGTTCTCGATTCTCGAACATTCCACTTTCTCATTCAGAAGGCCTATCGTACTGTCCCACGTCTGTTTCTCCTCGAGATGCGTTCGTTTTTGGTCGGATAGCTGCGATTGGAGATCTCTGCAAAACTCGAAAAGTTGACATTGAAAGCATGAAAAATGGCTCAAAAATCATGAAAAATGCTCCTACTCTGTCCTGAAAACTGTCAAAAAAGACACAGAAATTAGGTATTTTTTCTGGCTAATTTCTAGATTTTTGCACATTTTCTGCTCAATTTTAGCCGATTTGTTAGCCGGTTTTTCGCTGATTTCTACTAAATTATAGTTGGATTCTTCTCATTTTTTGATAATTTTCAGCTCATTTTTTGTTGATTTACTCCCAATTTTCAGCCTTTAATTAGGCTTAATTTCACTCGATTTCACTCGATTTCTGATTTTTTTTTCCATATTTTAAGCCTAATTTTAATCCCATTGTGTATTTTTCAGCCAATTTTGCTCAATTTTAGCTGATTTTTGTTAACCAAAGTATCACTATTTTTAGCTGTTTTCTGCTCGTTTTAGCATATTTTTAAAAACAATTTTAGAGGTCTCTGCAAAATTCGAAAAATGAATTATTCG</canonical>
            <polymorphic>TCAGGATTTCAGAACCTGACACTATCGGGATCCCAAAACTTCAGAATCTCAAAACCTCAGACTTCAAAATCTTAAGAACTAAAGTTTTCAGAATCTCAGAACTTCCGAATATCGAAATCTTCGCAATCCAAAAAAGGAACCCTACTTGAAGTCGTTCCAACCGAACATTCAACACTTGATTCGTCCTCAACACATCCTCCAACTGCTGCTGCTTCTGTAGCAACATATCCGACAACTGTGTCGTCGTTCCATCATCCTCCTGTTTCGATTGCTCATCCCTCATTCGTGCTCTCATCTCACTCATTACCTTCCGCAGCTCATTCTCCTTTTCGACTAGTTTCGCCTGATGCTGATCTCCTAGCCTCTTCATTTCTTGTTTCGTGAATTCGTTCTCGATTCTCGAACATTCCACTTTCTCATTCAGAAGGCCTATCGTACTGTCCCACGTCTGTTTCTCCTCGAGATGCGTTCGTTTTTGGTCGGATAGCTGCGATTGGAGRTCTCTGCAAAACTCGAAAAGTTGACATTGAAAGCATGAAAAATGGCTCAAAAATCATGAAAAATGCTCCTACTCTGTCCTGAAAACTGTCAAAAAAGACACAGAAATTAGGTATTTTTTCTGGCTAATTTCTAGATTTTTGCACATTTTCTGCTCAATTTTAGCCGATTTGTTAGCCGGTTTTTCGCTGATTTCTACTAAATTATAGTTGGATTCTTCTCATTTTTTGATAATTTTCAGCTCATTTTTTGTTGATTTACTCCCAATTTTCAGCCTTTAATTAGGCTTAATTTCACTCGATTTCACTCGATTTCTGATTTTTTTTTCCATATTTTAAGCCTAATTTTAATCCCATTGTGTATTTTTCAGCCAATTTTGCTCAATTTTAGCTGATTTTTGTTAACCAAAGTATCACTATTTTTAGCTGTTTTCTGCTCGTTTTAGCATATTTTTAAAAACAATTTTAGAGGTCTCTGCAAAATTCGAAAAATGAATTATTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>502 323 147 28</canonical_bands>
                <polymorphic_bands>649 323 28</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>502 470 28</canonical_bands>
                <polymorphic_bands>972 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACATTCCACTTTCTCATTCAG</pcr_primer_p1>
		<pcr_primer_p2>GAAAATGTGCAAAAATCTAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AACATTCCACTTTCTCATTCAGAAGGCCTATCGTACTGTCCCACGTCTGTTTCTCCTCGAGATGCGTTCGTTTTTGGTCGGATAGCTGCGATTGGAGATCTCTGCAAAACTCGAAAAGTTGACATTGAAAGCATGAAAAATGGCTCAAAAATCATGAAAAATGCTCCTACTCTGTCCTGAAAACTGTCAAAAAAGACACAGAAATTAGGTATTTTTTCTGGCTAATTTCTAGATTTTTGCACATTTTC</canonical_amplicon>
		<polymorphic_amplicon>AACATTCCACTTTCTCATTCAGAAGGCCTATCGTACTGTCCCACGTCTGTTTCTCCTCGAGATGCGTTCGTTTTTGGTCGGATAGCTGCGATTGGAGRTCTCTGCAAAACTCGAAAAGTTGACATTGAAAGCATGAAAAATGGCTCAAAAATCATGAAAAATGCTCCTACTCTGTCCTGAAAACTGTCAAAAAAGACACAGAAATTAGGTATTTTTTCTGGCTAATTTCTAGATTTTTGCACATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9276</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>152252</contig_pos>
        <strand>+</strand>
        <context>TCTCACTCAT[C/T]ACCTTCCGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCTCCTGTTTCGATTGCTCATCCCTCATTCGTGCTCTCATCTCACTCAT</left_flank>
        <right_flank>ACCTTCCGCAGCTCATTCTCCTTTTCGACTAGTTTCGCCTGATGCTGATC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTCGCGCTCCAGAGTTTCTTGCATCTCCGAATCCCCTATTTTCAGATTCTCACGATCTCCAACGTTCAAATTCTTAAAACCTCGGAATTTCAGAATCTCAGAATCTGAAAATATCGAGATCCCAACATTTTAGAATCTCGGAATTTCAGCATCGAAGAATCTCAGAATTTTGGAATCTCAGGATATTGGGATTTCAGGATTTCAGAACCTGACACTATCGGGATCCCAAAACTTCAGAATCTCAAAACCTCAGACTTCAAAATCTTAAGAACTAAAGTTTTCAGAATCTCAGAACTTCCGAATATCGAAATCTTCGCAATCCAAAAAAGGAACCCTACTTGAAGTCGTTCCAACCGAACATTCAACACTTGATTCGTCCTCAACACATCCTCCAACTGCTGCTGCTTCTGTAGCAACATATCCGACAACTGTGTCGTCGTTCCATCATCCTCCTGTTTCGATTGCTCATCCCTCATTCGTGCTCTCATCTCACTCATTACCTTCCGCAGCTCATTCTCCTTTTCGACTAGTTTCGCCTGATGCTGATCTCCTAGCCTCTTCATTTCTTGTTTCGTGAATTCGTTCTCGATTCTCGAACATTCCACTTTCTCATTCAGAAGGCCTATCGTACTGTCCCACGTCTGTTTCTCCTCGAGATGCGTTCGTTTTTGGTCGGATAGCTGCGATTGGAGATCTCTGCAAAACTCGAAAAGTTGACATTGAAAGCATGAAAAATGGCTCAAAAATCATGAAAAATGCTCCTACTCTGTCCTGAAAACTGTCAAAAAAGACACAGAAATTAGGTATTTTTTCTGGCTAATTTCTAGATTTTTGCACATTTTCTGCTCAATTTTAGCCGATTTGTTAGCCGGTTTTTCGCTGATTTCTACTAAATTATAGTTGGATTCTTCTCATTTTTTGATAATTTTCAGCTCATTTTTTGTTGATTTACTCCCAATTTTCAGCCTTTAATTAGGCTTAATTTCACTCGATTTCAC</canonical>
            <polymorphic>ATCTCGCGCTCCAGAGTTTCTTGCATCTCCGAATCCCCTATTTTCAGATTCTCACGATCTCCAACGTTCAAATTCTTAAAACCTCGGAATTTCAGAATCTCAGAATCTGAAAATATCGAGATCCCAACATTTTAGAATCTCGGAATTTCAGCATCGAAGAATCTCAGAATTTTGGAATCTCAGGATATTGGGATTTCAGGATTTCAGAACCTGACACTATCGGGATCCCAAAACTTCAGAATCTCAAAACCTCAGACTTCAAAATCTTAAGAACTAAAGTTTTCAGAATCTCAGAACTTCCGAATATCGAAATCTTCGCAATCCAAAAAAGGAACCCTACTTGAAGTCGTTCCAACCGAACATTCAACACTTGATTCGTCCTCAACACATCCTCCAACTGCTGCTGCTTCTGTAGCAACATATCCGACAACTGTGTCGTCGTTCCATCATCCTCCTGTTTCGATTGCTCATCCCTCATTCGTGCTCTCATCTCACTCATYACCTTCCGCAGCTCATTCTCCTTTTCGACTAGTTTCGCCTGATGCTGATCTCCTAGCCTCTTCATTTCTTGTTTCGTGAATTCGTTCTCGATTCTCGAACATTCCACTTTCTCATTCAGAAGGCCTATCGTACTGTCCCACGTCTGTTTCTCCTCGAGATGCGTTCGTTTTTGGTCGGATAGCTGCGATTGGAGATCTCTGCAAAACTCGAAAAGTTGACATTGAAAGCATGAAAAATGGCTCAAAAATCATGAAAAATGCTCCTACTCTGTCCTGAAAACTGTCAAAAAAGACACAGAAATTAGGTATTTTTTCTGGCTAATTTCTAGATTTTTGCACATTTTCTGCTCAATTTTAGCCGATTTGTTAGCCGGTTTTTCGCTGATTTCTACTAAATTATAGTTGGATTCTTCTCATTTTTTGATAATTTTCAGCTCATTTTTTGTTGATTTACTCCCAATTTTCAGCCTTTAATTAGGCTTAATTTCACTCGATTTCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTGATTCGTCCTCAACAC</pcr_primer_p1>
		<pcr_primer_p2>CTGAATGAGAAAGTGGAATGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACTTGATTCGTCCTCAACACATCCTCCAACTGCTGCTGCTTCTGTAGCAACATATCCGACAACTGTGTCGTCGTTCCATCATCCTCCTGTTTCGATTGCTCATCCCTCATTCGTGCTCTCATCTCACTCATTACCTTCCGCAGCTCATTCTCCTTTTCGACTAGTTTCGCCTGATGCTGATCTCCTAGCCTCTTCATTTCTTGTTTCGTGAATTCGTTCTCGATTCTCGAACATTCCACTTTCTCATTCAG</canonical_amplicon>
		<polymorphic_amplicon>ACTTGATTCGTCCTCAACACATCCTCCAACTGCTGCTGCTTCTGTAGCAACATATCCGACAACTGTGTCGTCGTTCCATCATCCTCCTGTTTCGATTGCTCATCCCTCATTCGTGCTCTCATCTCACTCATYACCTTCCGCAGCTCATTCTCCTTTTCGACTAGTTTCGCCTGATGCTGATCTCCTAGCCTCTTCATTTCTTGTTTCGTGAATTCGTTCTCGATTCTCGAACATTCCACTTTCTCATTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9277</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>90810</contig_pos>
        <strand>+</strand>
        <context>TGATTAATCC[C/T]TTTTTCTTAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTAACGACAAGCGGATGTTTCGTTGGAGCCGTGATGAGCTGATTAATCC</left_flank>
        <right_flank>TTTTTCTTAGACACCATTCAGAGAATTGATGGCATTGGCAGTTCACCGAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGCTAACTAAAAATCTTCGTTTGCTCTTCTCGAAAATGTCCATAACCAGCAGCGCCATCCCTGCAGCGCGTTCAAAGAAACGTTTCGTTGAGTGAGAGACACAGAGAAACACATCCAACGAATATTGCGTGGCGCCCCGCCCTTTCATCCACTTTTTCTTGTTGTTCACCTCAATTCGACTCCATTCGTGCTCCCCTCACTGTCACTTCAATCGTATAGCTTTTCCAGAAGAATCGGTTCAATCAACGATGTCGCAACACAAATTCCTTTTCACCTCTGAATCCGTGTCGGAAGGTCACCCGGATAAGATGTGTGATCAAGTGAGTTGAACAATTGGCCAGATCACGGTATCATTCAGTAAACCTTTCAGATCTCGGATGCGGTTCTTGATGCTCATCTCGCACAAGATCCTCACGCCAAAGTTGCCTGTGGTAAGTGGTTCAGGGATTTAACGACAAGCGGATGTTTCGTTGGAGCCGTGATGAGCTGATTAATCCCTTTTTCTTAGACACCATTCAGAGAATTGATGGCATTGGCAGTTCACCGACAATTCAGAACATCGAGTAACCTAGTTACTGCGAGCATGAATATCGTTTTGTGTTATTACGAGAGAATCGTTGGTGAACTCGTTTCGTTCGCTAATGTTCTCTCGTTGTTTCGCCTAATCATGTCTTTACTTACAGGCTCTGCGGGTGTTGGATGAAAGGGGATGACGCTTGTCGCAACAATATGTTTTCTTACCTGTTACTATGGTTACTTTGATTACAGAAACGGTGACTAAAACGGGTATGATCATGTTGTGCGTGAGATCACCTCGAAAGCCCACGTTGACTATCAAGTTCTCGTTCGTAACGTCGTCAAGAAAATCGGATACGATGACTCGTCCAAAGGTAAGAAGACTAAAATAGACATTGTTTGCGGAAGGATTGCTATCAACTGACAGTGAACCGTTATCAGCGCGTGGACGGAAAACTCCAGTGATGTTCCCTTGGCGAACT</canonical>
            <polymorphic>TCTGCTAACTAAAAATCTTCGTTTGCTCTTCTCGAAAATGTCCATAACCAGCAGCGCCATCCCTGCAGCGCGTTCAAAGAAACGTTTCGTTGAGTGAGAGACACAGAGAAACACATCCAACGAATATTGCGTGGCGCCCCGCCCTTTCATCCACTTTTTCTTGTTGTTCACCTCAATTCGACTCCATTCGTGCTCCCCTCACTGTCACTTCAATCGTATAGCTTTTCCAGAAGAATCGGTTCAATCAACGATGTCGCAACACAAATTCCTTTTCACCTCTGAATCCGTGTCGGAAGGTCACCCGGATAAGATGTGTGATCAAGTGAGTTGAACAATTGGCCAGATCACGGTATCATTCAGTAAACCTTTCAGATCTCGGATGCGGTTCTTGATGCTCATCTCGCACAAGATCCTCACGCCAAAGTTGCCTGTGGTAAGTGGTTCAGGGATTTAACGACAAGCGGATGTTTCGTTGGAGCCGTGATGAGCTGATTAATCCYTTTTTCTTAGACACCATTCAGAGAATTGATGGCATTGGCAGTTCACCGACAATTCAGAACATCGAGTAACCTAGTTACTGCGAGCATGAATATCGTTTTGTGTTATTACGAGAGAATCGTTGGTGAACTCGTTTCGTTCGCTAATGTTCTCTCGTTGTTTCGCCTAATCATGTCTTTACTTACAGGCTCTGCGGGTGTTGGATGAAAGGGGATGACGCTTGTCGCAACAATATGTTTTCTTACCTGTTACTATGGTTACTTTGATTACAGAAACGGTGACTAAAACGGGTATGATCATGTTGTGCGTGAGATCACCTCGAAAGCCCACGTTGACTATCAAGTTCTCGTTCGTAACGTCGTCAAGAAAATCGGATACGATGACTCGTCCAAAGGTAAGAAGACTAAAATAGACATTGTTTGCGGAAGGATTGCTATCAACTGACAGTGAACCGTTATCAGCGCGTGGACGGAAAACTCCAGTGATGTTCCCTTGGCGAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTATCATTCAGTAAACCTTTCA</pcr_primer_p1>
		<pcr_primer_p2>GATATTCATGCTCGCAGTAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGTATCATTCAGTAAACCTTTCAGATCTCGGATGCGGTTCTTGATGCTCATCTCGCACAAGATCCTCACGCCAAAGTTGCCTGTGGTAAGTGGTTCAGGGATTTAACGACAAGCGGATGTTTCGTTGGAGCCGTGATGAGCTGATTAATCCCTTTTTCTTAGACACCATTCAGAGAATTGATGGCATTGGCAGTTCACCGACAATTCAGAACATCGAGTAACCTAGTTACTGCGAGCATGAATATC</canonical_amplicon>
		<polymorphic_amplicon>GGTATCATTCAGTAAACCTTTCAGATCTCGGATGCGGTTCTTGATGCTCATCTCGCACAAGATCCTCACGCCAAAGTTGCCTGTGGTAAGTGGTTCAGGGATTTAACGACAAGCGGATGTTTCGTTGGAGCCGTGATGAGCTGATTAATCCYTTTTTCTTAGACACCATTCAGAGAATTGATGGCATTGGCAGTTCACCGACAATTCAGAACATCGAGTAACCTAGTTACTGCGAGCATGAATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9278</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>90872</contig_pos>
        <strand>+</strand>
        <context>ATTCAGAACA[G/T]CGAGTAACCT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CACCATTCAGAGAATTGATGGCATTGGCAGTTCACCGACAATTCAGAACA</left_flank>
        <right_flank>CGAGTAACCTAGTTACTGCGAGCATGAATATCGTTTTGTGTTATTACGAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGCAGCGCGTTCAAAGAAACGTTTCGTTGAGTGAGAGACACAGAGAAACACATCCAACGAATATTGCGTGGCGCCCCGCCCTTTCATCCACTTTTTCTTGTTGTTCACCTCAATTCGACTCCATTCGTGCTCCCCTCACTGTCACTTCAATCGTATAGCTTTTCCAGAAGAATCGGTTCAATCAACGATGTCGCAACACAAATTCCTTTTCACCTCTGAATCCGTGTCGGAAGGTCACCCGGATAAGATGTGTGATCAAGTGAGTTGAACAATTGGCCAGATCACGGTATCATTCAGTAAACCTTTCAGATCTCGGATGCGGTTCTTGATGCTCATCTCGCACAAGATCCTCACGCCAAAGTTGCCTGTGGTAAGTGGTTCAGGGATTTAACGACAAGCGGATGTTTCGTTGGAGCCGTGATGAGCTGATTAATCCCTTTTTCTTAGACACCATTCAGAGAATTGATGGCATTGGCAGTTCACCGACAATTCAGAACATCGAGTAACCTAGTTACTGCGAGCATGAATATCGTTTTGTGTTATTACGAGAGAATCGTTGGTGAACTCGTTTCGTTCGCTAATGTTCTCTCGTTGTTTCGCCTAATCATGTCTTTACTTACAGGCTCTGCGGGTGTTGGATGAAAGGGGATGACGCTTGTCGCAACAATATGTTTTCTTACCTGTTACTATGGTTACTTTGATTACAGAAACGGTGACTAAAACGGGTATGATCATGTTGTGCGTGAGATCACCTCGAAAGCCCACGTTGACTATCAAGTTCTCGTTCGTAACGTCGTCAAGAAAATCGGATACGATGACTCGTCCAAAGGTAAGAAGACTAAAATAGACATTGTTTGCGGAAGGATTGCTATCAACTGACAGTGAACCGTTATCAGCGCGTGGACGGAAAACTCCAGTGATGTTCCCTTGGCGAACTCTACTTCCCTAGCAGCTGATATAATGATATTTTCAGGATTTGACTACAAGACCTGCAACGTC</canonical>
            <polymorphic>CTGCAGCGCGTTCAAAGAAACGTTTCGTTGAGTGAGAGACACAGAGAAACACATCCAACGAATATTGCGTGGCGCCCCGCCCTTTCATCCACTTTTTCTTGTTGTTCACCTCAATTCGACTCCATTCGTGCTCCCCTCACTGTCACTTCAATCGTATAGCTTTTCCAGAAGAATCGGTTCAATCAACGATGTCGCAACACAAATTCCTTTTCACCTCTGAATCCGTGTCGGAAGGTCACCCGGATAAGATGTGTGATCAAGTGAGTTGAACAATTGGCCAGATCACGGTATCATTCAGTAAACCTTTCAGATCTCGGATGCGGTTCTTGATGCTCATCTCGCACAAGATCCTCACGCCAAAGTTGCCTGTGGTAAGTGGTTCAGGGATTTAACGACAAGCGGATGTTTCGTTGGAGCCGTGATGAGCTGATTAATCCCTTTTTCTTAGACACCATTCAGAGAATTGATGGCATTGGCAGTTCACCGACAATTCAGAACAKCGAGTAACCTAGTTACTGCGAGCATGAATATCGTTTTGTGTTATTACGAGAGAATCGTTGGTGAACTCGTTTCGTTCGCTAATGTTCTCTCGTTGTTTCGCCTAATCATGTCTTTACTTACAGGCTCTGCGGGTGTTGGATGAAAGGGGATGACGCTTGTCGCAACAATATGTTTTCTTACCTGTTACTATGGTTACTTTGATTACAGAAACGGTGACTAAAACGGGTATGATCATGTTGTGCGTGAGATCACCTCGAAAGCCCACGTTGACTATCAAGTTCTCGTTCGTAACGTCGTCAAGAAAATCGGATACGATGACTCGTCCAAAGGTAAGAAGACTAAAATAGACATTGTTTGCGGAAGGATTGCTATCAACTGACAGTGAACCGTTATCAGCGCGTGGACGGAAAACTCCAGTGATGTTCCCTTGGCGAACTCTACTTCCCTAGCAGCTGATATAATGATATTTTCAGGATTTGACTACAAGACCTGCAACGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>384 255 244 117</canonical_bands>
                <polymorphic_bands>639 244 117</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGACACCATTCAGAGAATTGAT</pcr_primer_p1>
		<pcr_primer_p2>AACCATAGTAACAGGTAAGAAAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGACACCATTCAGAGAATTGATGGCATTGGCAGTTCACCGACAATTCAGAACATCGAGTAACCTAGTTACTGCGAGCATGAATATCGTTTTGTGTTATTACGAGAGAATCGTTGGTGAACTCGTTTCGTTCGCTAATGTTCTCTCGTTGTTTCGCCTAATCATGTCTTTACTTACAGGCTCTGCGGGTGTTGGATGAAAGGGGATGACGCTTGTCGCAACAATATGTTTTCTTACCTGTTACTATGGTT</canonical_amplicon>
		<polymorphic_amplicon>TAGACACCATTCAGAGAATTGATGGCATTGGCAGTTCACCGACAATTCAGAACAKCGAGTAACCTAGTTACTGCGAGCATGAATATCGTTTTGTGTTATTACGAGAGAATCGTTGGTGAACTCGTTTCGTTCGCTAATGTTCTCTCGTTGTTTCGCCTAATCATGTCTTTACTTACAGGCTCTGCGGGTGTTGGATGAAAGGGGATGACGCTTGTCGCAACAATATGTTTTCTTACCTGTTACTATGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9279</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>91227</contig_pos>
        <strand>+</strand>
        <context>ATAGACATTG[C/T]TTGCGGAAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCGGATACGATGACTCGTCCAAAGGTAAGAAGACTAAAATAGACATTG</left_flank>
        <right_flank>TTGCGGAAGGATTGCTATCAACTGACAGTGAACCGTTATCAGCGCGTGGA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCAAAGTTGCCTGTGGTAAGTGGTTCAGGGATTTAACGACAAGCGGATGTTTCGTTGGAGCCGTGATGAGCTGATTAATCCCTTTTTCTTAGACACCATTCAGAGAATTGATGGCATTGGCAGTTCACCGACAATTCAGAACATCGAGTAACCTAGTTACTGCGAGCATGAATATCGTTTTGTGTTATTACGAGAGAATCGTTGGTGAACTCGTTTCGTTCGCTAATGTTCTCTCGTTGTTTCGCCTAATCATGTCTTTACTTACAGGCTCTGCGGGTGTTGGATGAAAGGGGATGACGCTTGTCGCAACAATATGTTTTCTTACCTGTTACTATGGTTACTTTGATTACAGAAACGGTGACTAAAACGGGTATGATCATGTTGTGCGTGAGATCACCTCGAAAGCCCACGTTGACTATCAAGTTCTCGTTCGTAACGTCGTCAAGAAAATCGGATACGATGACTCGTCCAAAGGTAAGAAGACTAAAATAGACATTGTTTGCGGAAGGATTGCTATCAACTGACAGTGAACCGTTATCAGCGCGTGGACGGAAAACTCCAGTGATGTTCCCTTGGCGAACTCTACTTCCCTAGCAGCTGATATAATGATATTTTCAGGATTTGACTACAAGACCTGCAACGTCCTTGTCGCTCTTGAACAGCAATCACCAGAAATCGCCGCTGGAGTTCATATGGACAAGAGCAGCGATGATGTTGGAGCTGGAGATCAGGGAATCATGTTTGGGTATGCTACCGATGAAACTGAGGAGGCTATGCCATTGACTCTTCTTCTGTCTCACAAGTTGAACTACAAGCTCCACGAGCTCCGTCGCTCCGGAGAACTCGGATGGGTTCGCCCAGATTCCAAGACTCAAGTCACTATCGAGTACGCTTCCGAGGGAGGTGCCTGTGTTCCACTTCGTGTCCACACTGTTGTCATCTCCACTCAACACTCTCCAGATATTGCGCTCGAGGATTTGAGAAAGGAACTCATCGAGA</canonical>
            <polymorphic>GCCAAAGTTGCCTGTGGTAAGTGGTTCAGGGATTTAACGACAAGCGGATGTTTCGTTGGAGCCGTGATGAGCTGATTAATCCCTTTTTCTTAGACACCATTCAGAGAATTGATGGCATTGGCAGTTCACCGACAATTCAGAACATCGAGTAACCTAGTTACTGCGAGCATGAATATCGTTTTGTGTTATTACGAGAGAATCGTTGGTGAACTCGTTTCGTTCGCTAATGTTCTCTCGTTGTTTCGCCTAATCATGTCTTTACTTACAGGCTCTGCGGGTGTTGGATGAAAGGGGATGACGCTTGTCGCAACAATATGTTTTCTTACCTGTTACTATGGTTACTTTGATTACAGAAACGGTGACTAAAACGGGTATGATCATGTTGTGCGTGAGATCACCTCGAAAGCCCACGTTGACTATCAAGTTCTCGTTCGTAACGTCGTCAAGAAAATCGGATACGATGACTCGTCCAAAGGTAAGAAGACTAAAATAGACATTGYTTGCGGAAGGATTGCTATCAACTGACAGTGAACCGTTATCAGCGCGTGGACGGAAAACTCCAGTGATGTTCCCTTGGCGAACTCTACTTCCCTAGCAGCTGATATAATGATATTTTCAGGATTTGACTACAAGACCTGCAACGTCCTTGTCGCTCTTGAACAGCAATCACCAGAAATCGCCGCTGGAGTTCATATGGACAAGAGCAGCGATGATGTTGGAGCTGGAGATCAGGGAATCATGTTTGGGTATGCTACCGATGAAACTGAGGAGGCTATGCCATTGACTCTTCTTCTGTCTCACAAGTTGAACTACAAGCTCCACGAGCTCCGTCGCTCCGGAGAACTCGGATGGGTTCGCCCAGATTCCAAGACTCAAGTCACTATCGAGTACGCTTCCGAGGGAGGTGCCTGTGTTCCACTTCGTGTCCACACTGTTGTCATCTCCACTCAACACTCTCCAGATATTGCGCTCGAGGATTTGAGAAAGGAACTCATCGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGACTAAAACGGGTATGAT</pcr_primer_p1>
		<pcr_primer_p2>TTATATCAGCTGCTAGGGAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTGACTAAAACGGGTATGATCATGTTGTGCGTGAGATCACCTCGAAAGCCCACGTTGACTATCAAGTTCTCGTTCGTAACGTCGTCAAGAAAATCGGATACGATGACTCGTCCAAAGGTAAGAAGACTAAAATAGACATTGTTTGCGGAAGGATTGCTATCAACTGACAGTGAACCGTTATCAGCGCGTGGACGGAAAACTCCAGTGATGTTCCCTTGGCGAACTCTACTTCCCTAGCAGCTGATATAA</canonical_amplicon>
		<polymorphic_amplicon>GGTGACTAAAACGGGTATGATCATGTTGTGCGTGAGATCACCTCGAAAGCCCACGTTGACTATCAAGTTCTCGTTCGTAACGTCGTCAAGAAAATCGGATACGATGACTCGTCCAAAGGTAAGAAGACTAAAATAGACATTGYTTGCGGAAGGATTGCTATCAACTGACAGTGAACCGTTATCAGCGCGTGGACGGAAAACTCCAGTGATGTTCCCTTGGCGAACTCTACTTCCCTAGCAGCTGATATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9280</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>95196</contig_pos>
        <strand></strand>
        <context>CGATTCTATC[A/G]TAAAGATTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTCTTCCGAAACTCAAAAAAAAGATGTCAACTGTTTTACGATTCTATC</left_flank>
        <right_flank>TAAAGATTGTGTAAAGAATACTGTACTGGAAATTTATTTTGACAAAAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCGCCACCCTGCGAATATACATGTGGTTGATTTAAGGCTTTCATTAATAATCAAGTTCGAAATTCAAATCACATCATTTTGAGAGACCGACTAGATTCACCAAACTACATAAAAATCAAACTGCTGAAACAAAATTTTTCGCAAACAAACCTGAACAGATGATCTCCGAATAGCATGTTTAGTGCGGGAATGTGAACTTCCAGAGTGCATATCCGATTGCTGGCCTGTTTGAATGTTAGGAGGAGTGTGTCGTGGGCCTGGAATGAGTTGATTCAAGGTTAGCCTATCGTCAAAAAAATAATGCTGAATTATACTAACAAGTTTATTTGAGAACTATTTGAAACGGTGAAAACTTTTGATGTGACTTGAAATTCGAAAGGAAATGTATTATTGGGAAGAATACATTTCAATCGAACCATTTTTTACCTAGTGGTTCTTAAAGAAATGCTCTTCTTCCGAAACTCAAAAAAAAGATGTCAACTGTTTTACGATTCTATCATAAAGATTGTGTAAAGAATACTGTACTGGAAATTTATTTTGACAAAAAATACATATTGGAAAAATCTTCATTTCAGTGATATTTTGAAAAAGCTTCAGCGCTTCAGCGCGAAATTAACGTCTGAAATTCCAGCCAAATTTTCAAAGTCGATATTTTGACCCCAAACTTTGACAAAATGTTTCCTATAGTTTTCTCCAGTTTTCCCCAAAGTTTCAGCCAGATTGGAACACTCTCCGAGTTTTCGCGGAGTTTTTTTCCTTATTTGCCGACTCCCTGAATAACCCCATTAGTTTTTTGCAATCTATCCGAGGAAACCACTTCTTGATATCTTCAATAGATGACGAGAAAAATTGGTTTCTATCAGAGACGTAGTTCAAGTTTGAGACAAGTTAGAATTCCAAAACCCATTCATGAAAATTTTGCTTGAAAGCTGGCTACTGTGATAAAAGCTAAACTCACTTTCACGTGCAATTGTACCAGGTTGGCATAACAGAAGGAAT</canonical>
            <polymorphic>TGCGCCACCCTGCGAATATACATGTGGTTGATTTAAGGCTTTCATTAATAATCAAGTTCGAAATTCAAATCACATCATTTTGAGAGACCGACTAGATTCACCAAACTACATAAAAATCAAACTGCTGAAACAAAATTTTTCGCAAACAAACCTGAACAGATGATCTCCGAATAGCATGTTTAGTGCGGGAATGTGAACTTCCAGAGTGCATATCCGATTGCTGGCCTGTTTGAATGTTAGGAGGAGTGTGTCGTGGGCCTGGAATGAGTTGATTCAAGGTTAGCCTATCGTCAAAAAAATAATGCTGAATTATACTAACAAGTTTATTTGAGAACTATTTGAAACGGTGAAAACTTTTGATGTGACTTGAAATTCGAAAGGAAATGTATTATTGGGAAGAATACATTTCAATCGAACCATTTTTTACCTAGTGGTTCTTAAAGAAATGCTCTTCTTCCGAAACTCAAAAAAAAGATGTCAACTGTTTTACGATTCTATCRTAAAGATTGTGTAAAGAATACTGTACTGGAAATTTATTTTGACAAAAAATACATATTGGAAAAATCTTCATTTCAGTGATATTTTGAAAAAGCTTCAGCGCTTCAGCGCGAAATTAACGTCTGAAATTCCAGCCAAATTTTCAAAGTCGATATTTTGACCCCAAACTTTGACAAAATGTTTCCTATAGTTTTCTCCAGTTTTCCCCAAAGTTTCAGCCAGATTGGAACACTCTCCGAGTTTTCGCGGAGTTTTTTTCCTTATTTGCCGACTCCCTGAATAACCCCATTAGTTTTTTGCAATCTATCCGAGGAAACCACTTCTTGATATCTTCAATAGATGACGAGAAAAATTGGTTTCTATCAGAGACGTAGTTCAAGTTTGAGACAAGTTAGAATTCCAAAACCCATTCATGAAAATTTTGCTTGAAAGCTGGCTACTGTGATAAAAGCTAAACTCACTTTCACGTGCAATTGTACCAGGTTGGCATAACAGAAGGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAACTTTTGATGTGACTTG</pcr_primer_p1>
		<pcr_primer_p2>TGAAGCTTTTTCAAAATATCACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAAAACTTTTGATGTGACTTGAAATTCGAAAGGAAATGTATTATTGGGAAGAATACATTTCAATCGAACCATTTTTTACCTAGTGGTTCTTAAAGAAATGCTCTTCTTCCGAAACTCAAAAAAAAGATGTCAACTGTTTTACGATTCTATCATAAAGATTGTGTAAAGAATACTGTACTGGAAATTTATTTTGACAAAAAATACATATTGGAAAAATCTTCATTTCAGTGATATTTTGAAAAAGCTTCA</canonical_amplicon>
		<polymorphic_amplicon>TGAAAACTTTTGATGTGACTTGAAATTCGAAAGGAAATGTATTATTGGGAAGAATACATTTCAATCGAACCATTTTTTACCTAGTGGTTCTTAAAGAAATGCTCTTCTTCCGAAACTCAAAAAAAAGATGTCAACTGTTTTACGATTCTATCRTAAAGATTGTGTAAAGAATACTGTACTGGAAATTTATTTTGACAAAAAATACATATTGGAAAAATCTTCATTTCAGTGATATTTTGAAAAAGCTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9281</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>94988</contig_pos>
        <strand>+</strand>
        <context>AGCCTATCGT[A/C]AAAAAAATAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGGAGTGTGTCGTGGGCCTGGAATGAGTTGATTCAAGGTTAGCCTATCGT</left_flank>
        <right_flank>AAAAAAATAATGCTGAATTATACTAACAAGTTTATTTGAGAACTATTTGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTGCATGAAAATCGCAAAGAAGCATTACGCCGTTCATTTCTGGACAATCACAGCAATACCGAGACTTGTGGTTAGTACCGAGGCGATTCCGAGACTTGGGTTTAGTGGCTTTGAACCAAACGTTAAATTTTACTTCTTCCAATTTTCTTGCTTCTGAGATACTTATGTCTAGAGATATACTCGATTTTAACAGTCCGGCTAATAGTGCGCCACCCTGCGAATATACATGTGGTTGATTTAAGGCTTTCATTAATAATCAAGTTCGAAATTCAAATCACATCATTTTGAGAGACCGACTAGATTCACCAAACTACATAAAAATCAAACTGCTGAAACAAAATTTTTCGCAAACAAACCTGAACAGATGATCTCCGAATAGCATGTTTAGTGCGGGAATGTGAACTTCCAGAGTGCATATCCGATTGCTGGCCTGTTTGAATGTTAGGAGGAGTGTGTCGTGGGCCTGGAATGAGTTGATTCAAGGTTAGCCTATCGTCAAAAAAATAATGCTGAATTATACTAACAAGTTTATTTGAGAACTATTTGAAACGGTGAAAACTTTTGATGTGACTTGAAATTCGAAAGGAAATGTATTATTGGGAAGAATACATTTCAATCGAACCATTTTTTACCTAGTGGTTCTTAAAGAAATGCTCTTCTTCCGAAACTCAAAAAAAAGATGTCAACTGTTTTACGATTCTATCATAAAGATTGTGTAAAGAATACTGTACTGGAAATTTATTTTGACAAAAAATACATATTGGAAAAATCTTCATTTCAGTGATATTTTGAAAAAGCTTCAGCGCTTCAGCGCGAAATTAACGTCTGAAATTCCAGCCAAATTTTCAAAGTCGATATTTTGACCCCAAACTTTGACAAAATGTTTCCTATAGTTTTCTCCAGTTTTCCCCAAAGTTTCAGCCAGATTGGAACACTCTCCGAGTTTTCGCGGAGTTTTTTTCCTTATTTGCCGACTCCCTGAATAACCCCATTAGTT</canonical>
            <polymorphic>AAGTTGCATGAAAATCGCAAAGAAGCATTACGCCGTTCATTTCTGGACAATCACAGCAATACCGAGACTTGTGGTTAGTACCGAGGCGATTCCGAGACTTGGGTTTAGTGGCTTTGAACCAAACGTTAAATTTTACTTCTTCCAATTTTCTTGCTTCTGAGATACTTATGTCTAGAGATATACTCGATTTTAACAGTCCGGCTAATAGTGCGCCACCCTGCGAATATACATGTGGTTGATTTAAGGCTTTCATTAATAATCAAGTTCGAAATTCAAATCACATCATTTTGAGAGACCGACTAGATTCACCAAACTACATAAAAATCAAACTGCTGAAACAAAATTTTTCGCAAACAAACCTGAACAGATGATCTCCGAATAGCATGTTTAGTGCGGGAATGTGAACTTCCAGAGTGCATATCCGATTGCTGGCCTGTTTGAATGTTAGGAGGAGTGTGTCGTGGGCCTGGAATGAGTTGATTCAAGGTTAGCCTATCGTMAAAAAAATAATGCTGAATTATACTAACAAGTTTATTTGAGAACTATTTGAAACGGTGAAAACTTTTGATGTGACTTGAAATTCGAAAGGAAATGTATTATTGGGAAGAATACATTTCAATCGAACCATTTTTTACCTAGTGGTTCTTAAAGAAATGCTCTTCTTCCGAAACTCAAAAAAAAGATGTCAACTGTTTTACGATTCTATCATAAAGATTGTGTAAAGAATACTGTACTGGAAATTTATTTTGACAAAAAATACATATTGGAAAAATCTTCATTTCAGTGATATTTTGAAAAAGCTTCAGCGCTTCAGCGCGAAATTAACGTCTGAAATTCCAGCCAAATTTTCAAAGTCGATATTTTGACCCCAAACTTTGACAAAATGTTTCCTATAGTTTTCTCCAGTTTTCCCCAAAGTTTCAGCCAGATTGGAACACTCTCCGAGTTTTCGCGGAGTTTTTTTCCTTATTTGCCGACTCCCTGAATAACCCCATTAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCACCAAACTACATAAAAATCAAA</pcr_primer_p1>
		<pcr_primer_p2>CCGTTTCAAATAGTTCTCAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCACCAAACTACATAAAAATCAAACTGCTGAAACAAAATTTTTCGCAAACAAACCTGAACAGATGATCTCCGAATAGCATGTTTAGTGCGGGAATGTGAACTTCCAGAGTGCATATCCGATTGCTGGCCTGTTTGAATGTTAGGAGGAGTGTGTCGTGGGCCTGGAATGAGTTGATTCAAGGTTAGCCTATCGTCAAAAAAATAATGCTGAATTATACTAACAAGTTTATTTGAGAACTATTTGAAACGG</canonical_amplicon>
		<polymorphic_amplicon>TCACCAAACTACATAAAAATCAAACTGCTGAAACAAAATTTTTCGCAAACAAACCTGAACAGATGATCTCCGAATAGCATGTTTAGTGCGGGAATGTGAACTTCCAGAGTGCATATCCGATTGCTGGCCTGTTTGAATGTTAGGAGGAGTGTGTCGTGGGCCTGGAATGAGTTGATTCAAGGTTAGCCTATCGTMAAAAAAATAATGCTGAATTATACTAACAAGTTTATTTGAGAACTATTTGAAACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9282</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>94865</contig_pos>
        <strand>+</strand>
        <context>GATGATCTCC[A/G]AATAGCATGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACTGCTGAAACAAAATTTTTCGCAAACAAACCTGAACAGATGATCTCC</left_flank>
        <right_flank>AATAGCATGTTTAGTGCGGGAATGTGAACTTCCAGAGTGCATATCCGATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACATTGAACAAAATTATTGTACCGGGCTCAAATTTGGAGTGCCGAAATCCCAATAATTCATTAGTTAACTGATCAAGTTTCAAACTATTTGGTCAACTTTGAGCTGAGTTATCGTTTGCCAAAGTTGCATGAAAATCGCAAAGAAGCATTACGCCGTTCATTTCTGGACAATCACAGCAATACCGAGACTTGTGGTTAGTACCGAGGCGATTCCGAGACTTGGGTTTAGTGGCTTTGAACCAAACGTTAAATTTTACTTCTTCCAATTTTCTTGCTTCTGAGATACTTATGTCTAGAGATATACTCGATTTTAACAGTCCGGCTAATAGTGCGCCACCCTGCGAATATACATGTGGTTGATTTAAGGCTTTCATTAATAATCAAGTTCGAAATTCAAATCACATCATTTTGAGAGACCGACTAGATTCACCAAACTACATAAAAATCAAACTGCTGAAACAAAATTTTTCGCAAACAAACCTGAACAGATGATCTCCGAATAGCATGTTTAGTGCGGGAATGTGAACTTCCAGAGTGCATATCCGATTGCTGGCCTGTTTGAATGTTAGGAGGAGTGTGTCGTGGGCCTGGAATGAGTTGATTCAAGGTTAGCCTATCGTCAAAAAAATAATGCTGAATTATACTAACAAGTTTATTTGAGAACTATTTGAAACGGTGAAAACTTTTGATGTGACTTGAAATTCGAAAGGAAATGTATTATTGGGAAGAATACATTTCAATCGAACCATTTTTTACCTAGTGGTTCTTAAAGAAATGCTCTTCTTCCGAAACTCAAAAAAAAGATGTCAACTGTTTTACGATTCTATCATAAAGATTGTGTAAAGAATACTGTACTGGAAATTTATTTTGACAAAAAATACATATTGGAAAAATCTTCATTTCAGTGATATTTTGAAAAAGCTTCAGCGCTTCAGCGCGAAATTAACGTCTGAAATTCCAGCCAAATTTTCAAAGTCGATATTTTGACCCCAAACTTT</canonical>
            <polymorphic>TAACATTGAACAAAATTATTGTACCGGGCTCAAATTTGGAGTGCCGAAATCCCAATAATTCATTAGTTAACTGATCAAGTTTCAAACTATTTGGTCAACTTTGAGCTGAGTTATCGTTTGCCAAAGTTGCATGAAAATCGCAAAGAAGCATTACGCCGTTCATTTCTGGACAATCACAGCAATACCGAGACTTGTGGTTAGTACCGAGGCGATTCCGAGACTTGGGTTTAGTGGCTTTGAACCAAACGTTAAATTTTACTTCTTCCAATTTTCTTGCTTCTGAGATACTTATGTCTAGAGATATACTCGATTTTAACAGTCCGGCTAATAGTGCGCCACCCTGCGAATATACATGTGGTTGATTTAAGGCTTTCATTAATAATCAAGTTCGAAATTCAAATCACATCATTTTGAGAGACCGACTAGATTCACCAAACTACATAAAAATCAAACTGCTGAAACAAAATTTTTCGCAAACAAACCTGAACAGATGATCTCCRAATAGCATGTTTAGTGCGGGAATGTGAACTTCCAGAGTGCATATCCGATTGCTGGCCTGTTTGAATGTTAGGAGGAGTGTGTCGTGGGCCTGGAATGAGTTGATTCAAGGTTAGCCTATCGTCAAAAAAATAATGCTGAATTATACTAACAAGTTTATTTGAGAACTATTTGAAACGGTGAAAACTTTTGATGTGACTTGAAATTCGAAAGGAAATGTATTATTGGGAAGAATACATTTCAATCGAACCATTTTTTACCTAGTGGTTCTTAAAGAAATGCTCTTCTTCCGAAACTCAAAAAAAAGATGTCAACTGTTTTACGATTCTATCATAAAGATTGTGTAAAGAATACTGTACTGGAAATTTATTTTGACAAAAAATACATATTGGAAAAATCTTCATTTCAGTGATATTTTGAAAAAGCTTCAGCGCTTCAGCGCGAAATTAACGTCTGAAATTCCAGCCAAATTTTCAAAGTCGATATTTTGACCCCAAACTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>243 218 216 164 65 47 47</canonical_bands>
                <polymorphic_bands>265 243 216 164 65 47</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCACCAAACTACATAAAAATCAAA</pcr_primer_p1>
		<pcr_primer_p2>CCGTTTCAAATAGTTCTCAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCACCAAACTACATAAAAATCAAACTGCTGAAACAAAATTTTTCGCAAACAAACCTGAACAGATGATCTCCGAATAGCATGTTTAGTGCGGGAATGTGAACTTCCAGAGTGCATATCCGATTGCTGGCCTGTTTGAATGTTAGGAGGAGTGTGTCGTGGGCCTGGAATGAGTTGATTCAAGGTTAGCCTATCGTCAAAAAAATAATGCTGAATTATACTAACAAGTTTATTTGAGAACTATTTGAAACGG</canonical_amplicon>
		<polymorphic_amplicon>TCACCAAACTACATAAAAATCAAACTGCTGAAACAAAATTTTTCGCAAACAAACCTGAACAGATGATCTCCRAATAGCATGTTTAGTGCGGGAATGTGAACTTCCAGAGTGCATATCCGATTGCTGGCCTGTTTGAATGTTAGGAGGAGTGTGTCGTGGGCCTGGAATGAGTTGATTCAAGGTTAGCCTATCGTCAAAAAAATAATGCTGAATTATACTAACAAGTTTATTTGAGAACTATTTGAAACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9283</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>94826</contig_pos>
        <strand>+</strand>
        <context>AACTGCTGAA[A/G]CAAAATTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAGAGACCGACTAGATTCACCAAACTACATAAAAATCAAACTGCTGAA</left_flank>
        <right_flank>CAAAATTTTTCGCAAACAAACCTGAACAGATGATCTCCGAATAGCATGTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGGGCGCATAATTCCAGGATTAAAGTTTGTACTAGCATAACATTGAACAAAATTATTGTACCGGGCTCAAATTTGGAGTGCCGAAATCCCAATAATTCATTAGTTAACTGATCAAGTTTCAAACTATTTGGTCAACTTTGAGCTGAGTTATCGTTTGCCAAAGTTGCATGAAAATCGCAAAGAAGCATTACGCCGTTCATTTCTGGACAATCACAGCAATACCGAGACTTGTGGTTAGTACCGAGGCGATTCCGAGACTTGGGTTTAGTGGCTTTGAACCAAACGTTAAATTTTACTTCTTCCAATTTTCTTGCTTCTGAGATACTTATGTCTAGAGATATACTCGATTTTAACAGTCCGGCTAATAGTGCGCCACCCTGCGAATATACATGTGGTTGATTTAAGGCTTTCATTAATAATCAAGTTCGAAATTCAAATCACATCATTTTGAGAGACCGACTAGATTCACCAAACTACATAAAAATCAAACTGCTGAAACAAAATTTTTCGCAAACAAACCTGAACAGATGATCTCCGAATAGCATGTTTAGTGCGGGAATGTGAACTTCCAGAGTGCATATCCGATTGCTGGCCTGTTTGAATGTTAGGAGGAGTGTGTCGTGGGCCTGGAATGAGTTGATTCAAGGTTAGCCTATCGTCAAAAAAATAATGCTGAATTATACTAACAAGTTTATTTGAGAACTATTTGAAACGGTGAAAACTTTTGATGTGACTTGAAATTCGAAAGGAAATGTATTATTGGGAAGAATACATTTCAATCGAACCATTTTTTACCTAGTGGTTCTTAAAGAAATGCTCTTCTTCCGAAACTCAAAAAAAAGATGTCAACTGTTTTACGATTCTATCATAAAGATTGTGTAAAGAATACTGTACTGGAAATTTATTTTGACAAAAAATACATATTGGAAAAATCTTCATTTCAGTGATATTTTGAAAAAGCTTCAGCGCTTCAGCGCGAAATTAACGTCTGAAATTCC</canonical>
            <polymorphic>AAAGGGCGCATAATTCCAGGATTAAAGTTTGTACTAGCATAACATTGAACAAAATTATTGTACCGGGCTCAAATTTGGAGTGCCGAAATCCCAATAATTCATTAGTTAACTGATCAAGTTTCAAACTATTTGGTCAACTTTGAGCTGAGTTATCGTTTGCCAAAGTTGCATGAAAATCGCAAAGAAGCATTACGCCGTTCATTTCTGGACAATCACAGCAATACCGAGACTTGTGGTTAGTACCGAGGCGATTCCGAGACTTGGGTTTAGTGGCTTTGAACCAAACGTTAAATTTTACTTCTTCCAATTTTCTTGCTTCTGAGATACTTATGTCTAGAGATATACTCGATTTTAACAGTCCGGCTAATAGTGCGCCACCCTGCGAATATACATGTGGTTGATTTAAGGCTTTCATTAATAATCAAGTTCGAAATTCAAATCACATCATTTTGAGAGACCGACTAGATTCACCAAACTACATAAAAATCAAACTGCTGAARCAAAATTTTTCGCAAACAAACCTGAACAGATGATCTCCGAATAGCATGTTTAGTGCGGGAATGTGAACTTCCAGAGTGCATATCCGATTGCTGGCCTGTTTGAATGTTAGGAGGAGTGTGTCGTGGGCCTGGAATGAGTTGATTCAAGGTTAGCCTATCGTCAAAAAAATAATGCTGAATTATACTAACAAGTTTATTTGAGAACTATTTGAAACGGTGAAAACTTTTGATGTGACTTGAAATTCGAAAGGAAATGTATTATTGGGAAGAATACATTTCAATCGAACCATTTTTTACCTAGTGGTTCTTAAAGAAATGCTCTTCTTCCGAAACTCAAAAAAAAGATGTCAACTGTTTTACGATTCTATCATAAAGATTGTGTAAAGAATACTGTACTGGAAATTTATTTTGACAAAAAATACATATTGGAAAAATCTTCATTTCAGTGATATTTTGAAAAAGCTTCAGCGCTTCAGCGCGAAATTAACGTCTGAAATTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTCGAAATTCAAATCACAT</pcr_primer_p1>
		<pcr_primer_p2>GATAGGCTAACCTTGAATCAACT</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>AAGTTCGAAATTCAAATCACATCATTTTGAGAGACCGACTAGATTCACCAAACTACATAAAAATCAAACTGCTGAAACAAAATTTTTCGCAAACAAACCTGAACAGATGATCTCCGAATAGCATGTTTAGTGCGGGAATGTGAACTTCCAGAGTGCATATCCGATTGCTGGCCTGTTTGAATGTTAGGAGGAGTGTGTCGTGGGCCTGGAATGAGTTGATTCAAGGTTAGCCTATC</canonical_amplicon>
		<polymorphic_amplicon>AAGTTCGAAATTCAAATCACATCATTTTGAGAGACCGACTAGATTCACCAAACTACATAAAAATCAAACTGCTGAARCAAAATTTTTCGCAAACAAACCTGAACAGATGATCTCCGAATAGCATGTTTAGTGCGGGAATGTGAACTTCCAGAGTGCATATCCGATTGCTGGCCTGTTTGAATGTTAGGAGGAGTGTGTCGTGGGCCTGGAATGAGTTGATTCAAGGTTAGCCTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9284</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>100559</contig_pos>
        <strand>+</strand>
        <context>TTGTTGGTAT[A/C]CAAGAAGCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TACTAAAAATAGATTTCCGAGTATAAAAAAAGGCATCGAGTTGTTGGTAT</left_flank>
        <right_flank>CAAGAAGCAATAGAAAACGAGTACGCTCAATTTCACACTGCATACAACTA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGATATGGGATGGATGTCACTGGAGTGGTTTCGGTCCGACACTCAAAATGATGATGATGGTGATCATCATCATCACAATGATGACTCGTTTCGAAGTTGTTGTCCTTCTGACAGACAAGGCTCTCTCTTATGTCCTCCAGAAGACAAGATTCCACGTCAAATCGCACCACATTTATCGCATCAATCATGTGAATCCGCGTGGAAAAGAGGAATCCCGATGGGACACCGGGAACGGAGGAATTGTTTAGGAGATGCGAAAAATGAGAATGGGACAGAGACAAAAAGGGCATATGGATATGGAGAAGATTGATGAGGGGTAAAGGAAATAAGAAAAAAGGAATATAAAAACACGAGGGAGGGGAATTTCGGAGCATAATTTTTAGAAGGGGTTCAAACTAAAATTTGAGGAACAAGTGGAAGTTCCCACAGAACTGATACTGTGATTTCTACTAAAAATAGATTTCCGAGTATAAAAAAAGGCATCGAGTTGTTGGTATACAAGAAGCAATAGAAAACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCGCATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTT</canonical>
            <polymorphic>ACAGATATGGGATGGATGTCACTGGAGTGGTTTCGGTCCGACACTCAAAATGATGATGATGGTGATCATCATCATCACAATGATGACTCGTTTCGAAGTTGTTGTCCTTCTGACAGACAAGGCTCTCTCTTATGTCCTCCAGAAGACAAGATTCCACGTCAAATCGCACCACATTTATCGCATCAATCATGTGAATCCGCGTGGAAAAGAGGAATCCCGATGGGACACCGGGAACGGAGGAATTGTTTAGGAGATGCGAAAAATGAGAATGGGACAGAGACAAAAAGGGCATATGGATATGGAGAAGATTGATGAGGGGTAAAGGAAATAAGAAAAAAGGAATATAAAAACACGAGGGAGGGGAATTTCGGAGCATAATTTTTAGAAGGGGTTCAAACTAAAATTTGAGGAACAAGTGGAAGTTCCCACAGAACTGATACTGTGATTTCTACTAAAAATAGATTTCCGAGTATAAAAAAAGGCATCGAGTTGTTGGTATMCAAGAAGCAATAGAAAACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCGCATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTATAC</site>
                <isoschizomers>
                    <enzyme>BssNAI</enzyme>
                    <enzyme>Bst1107I</enzyme>
                    <enzyme>BstZ17I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGGGTAAAGGAAATAAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTCCTCCTTCCTCTAGTTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGGGTAAAGGAAATAAGAAAAAAGGAATATAAAAACACGAGGGAGGGGAATTTCGGAGCATAATTTTTAGAAGGGGTTCAAACTAAAATTTGAGGAACAAGTGGAAGTTCCCACAGAACTGATACTGTGATTTCTACTAAAAATAGATTTCCGAGTATAAAAAAAGGCATCGAGTTGTTGGTATACAAGAAGCAATAGAAAACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAA</canonical_amplicon>
		<polymorphic_amplicon>AGGGGTAAAGGAAATAAGAAAAAAGGAATATAAAAACACGAGGGAGGGGAATTTCGGAGCATAATTTTTAGAAGGGGTTCAAACTAAAATTTGAGGAACAAGTGGAAGTTCCCACAGAACTGATACTGTGATTTCTACTAAAAATAGATTTCCGAGTATAAAAAAAGGCATCGAGTTGTTGGTATMCAAGAAGCAATAGAAAACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9285</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>100574</contig_pos>
        <strand>+</strand>
        <context>AAGCAATAGA[A/C]AACGAGTACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCGAGTATAAAAAAAGGCATCGAGTTGTTGGTATACAAGAAGCAATAGA</left_flank>
        <right_flank>AACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTCACTGGAGTGGTTTCGGTCCGACACTCAAAATGATGATGATGGTGATCATCATCATCACAATGATGACTCGTTTCGAAGTTGTTGTCCTTCTGACAGACAAGGCTCTCTCTTATGTCCTCCAGAAGACAAGATTCCACGTCAAATCGCACCACATTTATCGCATCAATCATGTGAATCCGCGTGGAAAAGAGGAATCCCGATGGGACACCGGGAACGGAGGAATTGTTTAGGAGATGCGAAAAATGAGAATGGGACAGAGACAAAAAGGGCATATGGATATGGAGAAGATTGATGAGGGGTAAAGGAAATAAGAAAAAAGGAATATAAAAACACGAGGGAGGGGAATTTCGGAGCATAATTTTTAGAAGGGGTTCAAACTAAAATTTGAGGAACAAGTGGAAGTTCCCACAGAACTGATACTGTGATTTCTACTAAAAATAGATTTCCGAGTATAAAAAAAGGCATCGAGTTGTTGGTATACAAGAAGCAATAGAAAACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCGCATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTTTCAGTCAAAAATACT</canonical>
            <polymorphic>ATGTCACTGGAGTGGTTTCGGTCCGACACTCAAAATGATGATGATGGTGATCATCATCATCACAATGATGACTCGTTTCGAAGTTGTTGTCCTTCTGACAGACAAGGCTCTCTCTTATGTCCTCCAGAAGACAAGATTCCACGTCAAATCGCACCACATTTATCGCATCAATCATGTGAATCCGCGTGGAAAAGAGGAATCCCGATGGGACACCGGGAACGGAGGAATTGTTTAGGAGATGCGAAAAATGAGAATGGGACAGAGACAAAAAGGGCATATGGATATGGAGAAGATTGATGAGGGGTAAAGGAAATAAGAAAAAAGGAATATAAAAACACGAGGGAGGGGAATTTCGGAGCATAATTTTTAGAAGGGGTTCAAACTAAAATTTGAGGAACAAGTGGAAGTTCCCACAGAACTGATACTGTGATTTCTACTAAAAATAGATTTCCGAGTATAAAAAAAGGCATCGAGTTGTTGGTATACAAGAAGCAATAGAMAACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCGCATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTTTCAGTCAAAAATACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTAGAAGGGGTTCAAACTA</pcr_primer_p1>
		<pcr_primer_p2>TCTCTCTCTCTCTCTCCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTAGAAGGGGTTCAAACTAAAATTTGAGGAACAAGTGGAAGTTCCCACAGAACTGATACTGTGATTTCTACTAAAAATAGATTTCCGAGTATAAAAAAAGGCATCGAGTTGTTGGTATACAAGAAGCAATAGAAAACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCGCATTTTTTGGAGAGAGAGAGAGAGA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTAGAAGGGGTTCAAACTAAAATTTGAGGAACAAGTGGAAGTTCCCACAGAACTGATACTGTGATTTCTACTAAAAATAGATTTCCGAGTATAAAAAAAGGCATCGAGTTGTTGGTATACAAGAAGCAATAGAMAACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCGCATTTTTTGGAGAGAGAGAGAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9286</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>100660</contig_pos>
        <strand>+</strand>
        <context>AGTGTTTTTC[A/G]CATTTTTTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTC</left_flank>
        <right_flank>CATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTCCTTCTGACAGACAAGGCTCTCTCTTATGTCCTCCAGAAGACAAGATTCCACGTCAAATCGCACCACATTTATCGCATCAATCATGTGAATCCGCGTGGAAAAGAGGAATCCCGATGGGACACCGGGAACGGAGGAATTGTTTAGGAGATGCGAAAAATGAGAATGGGACAGAGACAAAAAGGGCATATGGATATGGAGAAGATTGATGAGGGGTAAAGGAAATAAGAAAAAAGGAATATAAAAACACGAGGGAGGGGAATTTCGGAGCATAATTTTTAGAAGGGGTTCAAACTAAAATTTGAGGAACAAGTGGAAGTTCCCACAGAACTGATACTGTGATTTCTACTAAAAATAGATTTCCGAGTATAAAAAAAGGCATCGAGTTGTTGGTATACAAGAAGCAATAGAAAACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCGCATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGTTGAAGTACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGA</canonical>
            <polymorphic>TTGTCCTTCTGACAGACAAGGCTCTCTCTTATGTCCTCCAGAAGACAAGATTCCACGTCAAATCGCACCACATTTATCGCATCAATCATGTGAATCCGCGTGGAAAAGAGGAATCCCGATGGGACACCGGGAACGGAGGAATTGTTTAGGAGATGCGAAAAATGAGAATGGGACAGAGACAAAAAGGGCATATGGATATGGAGAAGATTGATGAGGGGTAAAGGAAATAAGAAAAAAGGAATATAAAAACACGAGGGAGGGGAATTTCGGAGCATAATTTTTAGAAGGGGTTCAAACTAAAATTTGAGGAACAAGTGGAAGTTCCCACAGAACTGATACTGTGATTTCTACTAAAAATAGATTTCCGAGTATAAAAAAAGGCATCGAGTTGTTGGTATACAAGAAGCAATAGAAAACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCRCATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGTTGAAGTACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTTCCCACAGAACTGATAC</pcr_primer_p1>
		<pcr_primer_p2>AGATTGCTCTCTACTAAAACTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAGTTCCCACAGAACTGATACTGTGATTTCTACTAAAAATAGATTTCCGAGTATAAAAAAAGGCATCGAGTTGTTGGTATACAAGAAGCAATAGAAAACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCGCATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCT</canonical_amplicon>
		<polymorphic_amplicon>GAAGTTCCCACAGAACTGATACTGTGATTTCTACTAAAAATAGATTTCCGAGTATAAAAAAAGGCATCGAGTTGTTGGTATACAAGAAGCAATAGAAAACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCRCATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9287</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>100810</contig_pos>
        <strand>+</strand>
        <context>TATTTTCTGA[C/T]AAAATWAWTY</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGA</left_flank>
        <right_flank>AAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATGCGAAAAATGAGAATGGGACAGAGACAAAAAGGGCATATGGATATGGAGAAGATTGATGAGGGGTAAAGGAAATAAGAAAAAAGGAATATAAAAACACGAGGGAGGGGAATTTCGGAGCATAATTTTTAGAAGGGGTTCAAACTAAAATTTGAGGAACAAGTGGAAGTTCCCACAGAACTGATACTGTGATTTCTACTAAAAATAGATTTCCGAGTATAAAAAAAGGCATCGAGTTGTTGGTATACAAGAAGCAATAGAAAACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCGCATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGTTGAAGTACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGATTCTAATACAATTTGAATGAAAGTTAACCGAACTTTTTGAAGAAAACTATCCGGGAAAAATGACCTTAAATGGAAGGGTCCCTAGAATAGAAGGGCCCTCCAGAGGTTCTAGTAAGGTTTTACACGCCTTTCAAAATTCATAAAGAAACC</canonical>
            <polymorphic>AGATGCGAAAAATGAGAATGGGACAGAGACAAAAAGGGCATATGGATATGGAGAAGATTGATGAGGGGTAAAGGAAATAAGAAAAAAGGAATATAAAAACACGAGGGAGGGGAATTTCGGAGCATAATTTTTAGAAGGGGTTCAAACTAAAATTTGAGGAACAAGTGGAAGTTCCCACAGAACTGATACTGTGATTTCTACTAAAAATAGATTTCCGAGTATAAAAAAAGGCATCGAGTTGTTGGTATACAAGAAGCAATAGAAAACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCGCATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGAYAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGTTGAAGTACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGATTCTAATACAATTTGAATGAAAGTTAACCGAACTTTTTGAAGAAAACTATCCGGGAAAAATGACCTTAAATGGAAGGGTCCCTAGAATAGAAGGGCCCTCCAGAGGTTCTAGTAAGGTTTTACACGCCTTTCAAAATTCATAAAGAAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGACAAGACTTTTGAGTTTTA</pcr_primer_p1>
		<pcr_primer_p2>ATGATGCCTTTCTAATACAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCAT</canonical_amplicon>
		<polymorphic_amplicon>GGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGAYAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9288</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>100816</contig_pos>
        <strand>+</strand>
        <context>CTGAYAAAAT[A/T]AWTYTGAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAAT</left_flank>
        <right_flank>AATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAATGAGAATGGGACAGAGACAAAAAGGGCATATGGATATGGAGAAGATTGATGAGGGGTAAAGGAAATAAGAAAAAAGGAATATAAAAACACGAGGGAGGGGAATTTCGGAGCATAATTTTTAGAAGGGGTTCAAACTAAAATTTGAGGAACAAGTGGAAGTTCCCACAGAACTGATACTGTGATTTCTACTAAAAATAGATTTCCGAGTATAAAAAAAGGCATCGAGTTGTTGGTATACAAGAAGCAATAGAAAACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCGCATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGTTGAAGTACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGATTCTAATACAATTTGAATGAAAGTTAACCGAACTTTTTGAAGAAAACTATCCGGGAAAAATGACCTTAAATGGAAGGGTCCCTAGAATAGAAGGGCCCTCCAGAGGTTCTAGTAAGGTTTTACACGCCTTTCAAAATTCATAAAGAAACCTTCACT</canonical>
            <polymorphic>GAAAAATGAGAATGGGACAGAGACAAAAAGGGCATATGGATATGGAGAAGATTGATGAGGGGTAAAGGAAATAAGAAAAAAGGAATATAAAAACACGAGGGAGGGGAATTTCGGAGCATAATTTTTAGAAGGGGTTCAAACTAAAATTTGAGGAACAAGTGGAAGTTCCCACAGAACTGATACTGTGATTTCTACTAAAAATAGATTTCCGAGTATAAAAAAAGGCATCGAGTTGTTGGTATACAAGAAGCAATAGAAAACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCGCATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATWAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGTTGAAGTACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGATTCTAATACAATTTGAATGAAAGTTAACCGAACTTTTTGAAGAAAACTATCCGGGAAAAATGACCTTAAATGGAAGGGTCCCTAGAATAGAAGGGCCCTCCAGAGGTTCTAGTAAGGTTTTACACGCCTTTCAAAATTCATAAAGAAACCTTCACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGACAAGACTTTTGAGTTTTA</pcr_primer_p1>
		<pcr_primer_p2>ATGATGCCTTTCTAATACAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCAT</canonical_amplicon>
		<polymorphic_amplicon>GGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATWAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9289</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>100818</contig_pos>
        <strand>+</strand>
        <context>GAYAAAATWA[A/T]TYTGAATCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAA</left_flank>
        <right_flank>TCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATGAGAATGGGACAGAGACAAAAAGGGCATATGGATATGGAGAAGATTGATGAGGGGTAAAGGAAATAAGAAAAAAGGAATATAAAAACACGAGGGAGGGGAATTTCGGAGCATAATTTTTAGAAGGGGTTCAAACTAAAATTTGAGGAACAAGTGGAAGTTCCCACAGAACTGATACTGTGATTTCTACTAAAAATAGATTTCCGAGTATAAAAAAAGGCATCGAGTTGTTGGTATACAAGAAGCAATAGAAAACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCGCATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGTTGAAGTACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGATTCTAATACAATTTGAATGAAAGTTAACCGAACTTTTTGAAGAAAACTATCCGGGAAAAATGACCTTAAATGGAAGGGTCCCTAGAATAGAAGGGCCCTCCAGAGGTTCTAGTAAGGTTTTACACGCCTTTCAAAATTCATAAAGAAACCTTCACTCG</canonical>
            <polymorphic>AAAATGAGAATGGGACAGAGACAAAAAGGGCATATGGATATGGAGAAGATTGATGAGGGGTAAAGGAAATAAGAAAAAAGGAATATAAAAACACGAGGGAGGGGAATTTCGGAGCATAATTTTTAGAAGGGGTTCAAACTAAAATTTGAGGAACAAGTGGAAGTTCCCACAGAACTGATACTGTGATTTCTACTAAAAATAGATTTCCGAGTATAAAAAAAGGCATCGAGTTGTTGGTATACAAGAAGCAATAGAAAACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCGCATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAWTCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGTTGAAGTACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGATTCTAATACAATTTGAATGAAAGTTAACCGAACTTTTTGAAGAAAACTATCCGGGAAAAATGACCTTAAATGGAAGGGTCCCTAGAATAGAAGGGCCCTCCAGAGGTTCTAGTAAGGTTTTACACGCCTTTCAAAATTCATAAAGAAACCTTCACTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGACAAGACTTTTGAGTTTTA</pcr_primer_p1>
		<pcr_primer_p2>ATGATGCCTTTCTAATACAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCAT</canonical_amplicon>
		<polymorphic_amplicon>GGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAWTCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9290</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>100820</contig_pos>
        <strand>+</strand>
        <context>YAAAATWAWT[C/T]TGAATCAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAAT</left_flank>
        <right_flank>TGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGAGAATGGGACAGAGACAAAAAGGGCATATGGATATGGAGAAGATTGATGAGGGGTAAAGGAAATAAGAAAAAAGGAATATAAAAACACGAGGGAGGGGAATTTCGGAGCATAATTTTTAGAAGGGGTTCAAACTAAAATTTGAGGAACAAGTGGAAGTTCCCACAGAACTGATACTGTGATTTCTACTAAAAATAGATTTCCGAGTATAAAAAAAGGCATCGAGTTGTTGGTATACAAGAAGCAATAGAAAACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCGCATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGTTGAAGTACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGATTCTAATACAATTTGAATGAAAGTTAACCGAACTTTTTGAAGAAAACTATCCGGGAAAAATGACCTTAAATGGAAGGGTCCCTAGAATAGAAGGGCCCTCCAGAGGTTCTAGTAAGGTTTTACACGCCTTTCAAAATTCATAAAGAAACCTTCACTCGAA</canonical>
            <polymorphic>AATGAGAATGGGACAGAGACAAAAAGGGCATATGGATATGGAGAAGATTGATGAGGGGTAAAGGAAATAAGAAAAAAGGAATATAAAAACACGAGGGAGGGGAATTTCGGAGCATAATTTTTAGAAGGGGTTCAAACTAAAATTTGAGGAACAAGTGGAAGTTCCCACAGAACTGATACTGTGATTTCTACTAAAAATAGATTTCCGAGTATAAAAAAAGGCATCGAGTTGTTGGTATACAAGAAGCAATAGAAAACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCGCATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATYTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGTTGAAGTACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGATTCTAATACAATTTGAATGAAAGTTAACCGAACTTTTTGAAGAAAACTATCCGGGAAAAATGACCTTAAATGGAAGGGTCCCTAGAATAGAAGGGCCCTCCAGAGGTTCTAGTAAGGTTTTACACGCCTTTCAAAATTCATAAAGAAACCTTCACTCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>346 281 153 109 97 14</canonical_bands>
                <polymorphic_bands>346 281 167 109 97</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGACAAGACTTTTGAGTTTTA</pcr_primer_p1>
		<pcr_primer_p2>ATGATGCCTTTCTAATACAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCAT</canonical_amplicon>
		<polymorphic_amplicon>GGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATYTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9291</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>100837</contig_pos>
        <strand>+</strand>
        <context>AAATACGCAG[A/G]TCAAAAGGCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAG</left_flank>
        <right_flank>TCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACAAAAAGGGCATATGGATATGGAGAAGATTGATGAGGGGTAAAGGAAATAAGAAAAAAGGAATATAAAAACACGAGGGAGGGGAATTTCGGAGCATAATTTTTAGAAGGGGTTCAAACTAAAATTTGAGGAACAAGTGGAAGTTCCCACAGAACTGATACTGTGATTTCTACTAAAAATAGATTTCCGAGTATAAAAAAAGGCATCGAGTTGTTGGTATACAAGAAGCAATAGAAAACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCGCATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGTTGAAGTACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGATTCTAATACAATTTGAATGAAAGTTAACCGAACTTTTTGAAGAAAACTATCCGGGAAAAATGACCTTAAATGGAAGGGTCCCTAGAATAGAAGGGCCCTCCAGAGGTTCTAGTAAGGTTTTACACGCCTTTCAAAATTCATAAAGAAACCTTCACTCGAAATCTATAGATTTGCAGA</canonical>
            <polymorphic>GACAAAAAGGGCATATGGATATGGAGAAGATTGATGAGGGGTAAAGGAAATAAGAAAAAAGGAATATAAAAACACGAGGGAGGGGAATTTCGGAGCATAATTTTTAGAAGGGGTTCAAACTAAAATTTGAGGAACAAGTGGAAGTTCCCACAGAACTGATACTGTGATTTCTACTAAAAATAGATTTCCGAGTATAAAAAAAGGCATCGAGTTGTTGGTATACAAGAAGCAATAGAAAACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCGCATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGRTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGTTGAAGTACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGATTCTAATACAATTTGAATGAAAGTTAACCGAACTTTTTGAAGAAAACTATCCGGGAAAAATGACCTTAAATGGAAGGGTCCCTAGAATAGAAGGGCCCTCCAGAGGTTCTAGTAAGGTTTTACACGCCTTTCAAAATTCATAAAGAAACCTTCACTCGAAATCTATAGATTTGCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGACAAGACTTTTGAGTTTTA</pcr_primer_p1>
		<pcr_primer_p2>ATGATGCCTTTCTAATACAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCAT</canonical_amplicon>
		<polymorphic_amplicon>GGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGRTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9292</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>100860</contig_pos>
        <strand>+</strand>
        <context>AATACGGAAT[A/G]TTTGCGATTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAAT</left_flank>
        <right_flank>TTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAAGATTGATGAGGGGTAAAGGAAATAAGAAAAAAGGAATATAAAAACACGAGGGAGGGGAATTTCGGAGCATAATTTTTAGAAGGGGTTCAAACTAAAATTTGAGGAACAAGTGGAAGTTCCCACAGAACTGATACTGTGATTTCTACTAAAAATAGATTTCCGAGTATAAAAAAAGGCATCGAGTTGTTGGTATACAAGAAGCAATAGAAAACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCGCATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGTTGAAGTACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGATTCTAATACAATTTGAATGAAAGTTAACCGAACTTTTTGAAGAAAACTATCCGGGAAAAATGACCTTAAATGGAAGGGTCCCTAGAATAGAAGGGCCCTCCAGAGGTTCTAGTAAGGTTTTACACGCCTTTCAAAATTCATAAAGAAACCTTCACTCGAAATCTATAGATTTGCAGAAATTTTTTGAAAAAAAGCTGTTT</canonical>
            <polymorphic>GAGAAGATTGATGAGGGGTAAAGGAAATAAGAAAAAAGGAATATAAAAACACGAGGGAGGGGAATTTCGGAGCATAATTTTTAGAAGGGGTTCAAACTAAAATTTGAGGAACAAGTGGAAGTTCCCACAGAACTGATACTGTGATTTCTACTAAAAATAGATTTCCGAGTATAAAAAAAGGCATCGAGTTGTTGGTATACAAGAAGCAATAGAAAACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCGCATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATRTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGTTGAAGTACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGATTCTAATACAATTTGAATGAAAGTTAACCGAACTTTTTGAAGAAAACTATCCGGGAAAAATGACCTTAAATGGAAGGGTCCCTAGAATAGAAGGGCCCTCCAGAGGTTCTAGTAAGGTTTTACACGCCTTTCAAAATTCATAAAGAAACCTTCACTCGAAATCTATAGATTTGCAGAAATTTTTTGAAAAAAAGCTGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGACAAGACTTTTGAGTTTTA</pcr_primer_p1>
		<pcr_primer_p2>ATGATGCCTTTCTAATACAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCAT</canonical_amplicon>
		<polymorphic_amplicon>GGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATRTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9293</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>100884</contig_pos>
        <strand>+</strand>
        <context>ATCGACATTT[C/T]TCAAGAAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTT</left_flank>
        <right_flank>TCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATAAGAAAAAAGGAATATAAAAACACGAGGGAGGGGAATTTCGGAGCATAATTTTTAGAAGGGGTTCAAACTAAAATTTGAGGAACAAGTGGAAGTTCCCACAGAACTGATACTGTGATTTCTACTAAAAATAGATTTCCGAGTATAAAAAAAGGCATCGAGTTGTTGGTATACAAGAAGCAATAGAAAACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCGCATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGTTGAAGTACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGATTCTAATACAATTTGAATGAAAGTTAACCGAACTTTTTGAAGAAAACTATCCGGGAAAAATGACCTTAAATGGAAGGGTCCCTAGAATAGAAGGGCCCTCCAGAGGTTCTAGTAAGGTTTTACACGCCTTTCAAAATTCATAAAGAAACCTTCACTCGAAATCTATAGATTTGCAGAAATTTTTTGAAAAAAAGCTGTTTCGCAAATTTGATGAAAAGAGAAGG</canonical>
            <polymorphic>AAATAAGAAAAAAGGAATATAAAAACACGAGGGAGGGGAATTTCGGAGCATAATTTTTAGAAGGGGTTCAAACTAAAATTTGAGGAACAAGTGGAAGTTCCCACAGAACTGATACTGTGATTTCTACTAAAAATAGATTTCCGAGTATAAAAAAAGGCATCGAGTTGTTGGTATACAAGAAGCAATAGAAAACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCGCATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTYTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGTTGAAGTACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGATTCTAATACAATTTGAATGAAAGTTAACCGAACTTTTTGAAGAAAACTATCCGGGAAAAATGACCTTAAATGGAAGGGTCCCTAGAATAGAAGGGCCCTCCAGAGGTTCTAGTAAGGTTTTACACGCCTTTCAAAATTCATAAAGAAACCTTCACTCGAAATCTATAGATTTGCAGAAATTTTTTGAAAAAAAGCTGTTTCGCAAATTTGATGAAAAGAGAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGACAAGACTTTTGAGTTTTA</pcr_primer_p1>
		<pcr_primer_p2>ATGATGCCTTTCTAATACAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCAT</canonical_amplicon>
		<polymorphic_amplicon>GGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTYTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9294</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>101043</contig_pos>
        <strand>+</strand>
        <context>TTCGAAGTTT[A/G]AAATTTCCGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTT</left_flank>
        <right_flank>AAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAGTTGTTGGTATACAAGAAGCAATAGAAAACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCGCATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGTTGAAGTACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGATTCTAATACAATTTGAATGAAAGTTAACCGAACTTTTTGAAGAAAACTATCCGGGAAAAATGACCTTAAATGGAAGGGTCCCTAGAATAGAAGGGCCCTCCAGAGGTTCTAGTAAGGTTTTACACGCCTTTCAAAATTCATAAAGAAACCTTCACTCGAAATCTATAGATTTGCAGAAATTTTTTGAAAAAAAGCTGTTTCGCAAATTTGATGAAAAGAGAAGGCCTATTTTTGTTCCCTATTCTTTCTTTATTAGAAATAATAAATATGTATATATTGTCGAAATAAAAAAAAACTGGGACTTGAGAAGTGAAAACCGTCGCTTTTTTGATCTACGAAAAAGTGCGGCAAAATCGTAATATTTCAGACTTTTGCCTCGTCCG</canonical>
            <polymorphic>TCGAGTTGTTGGTATACAAGAAGCAATAGAAAACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCGCATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTRAAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGTTGAAGTACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGATTCTAATACAATTTGAATGAAAGTTAACCGAACTTTTTGAAGAAAACTATCCGGGAAAAATGACCTTAAATGGAAGGGTCCCTAGAATAGAAGGGCCCTCCAGAGGTTCTAGTAAGGTTTTACACGCCTTTCAAAATTCATAAAGAAACCTTCACTCGAAATCTATAGATTTGCAGAAATTTTTTGAAAAAAAGCTGTTTCGCAAATTTGATGAAAAGAGAAGGCCTATTTTTGTTCCCTATTCTTTCTTTATTAGAAATAATAAATATGTATATATTGTCGAAATAAAAAAAAACTGGGACTTGAGAAGTGAAAACCGTCGCTTTTTTGATCTACGAAAAAGTGCGGCAAAATCGTAATATTTCAGACTTTTGCCTCGTCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>397 317 101 97 46 42</canonical_bands>
                <polymorphic_bands>397 317 198 46 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGGTCCCTCTAACAGAAG</pcr_primer_p1>
		<pcr_primer_p2>CGTGTAAAACCTTACTAGAACCTC</pcr_primer_p2>
		<pcr_amplicon_size>340</pcr_amplicon_size>
		<canonical_amplicon>AAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGTTGAAGTACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGATTCTAATACAATTTGAATGAAAGTTAACCGAACTTTTTGAAGAAAACTATCCGGGAAAAATGACCTTAAATGGAAGGGTCCCTAGAATAGAAGGGCCCTCCAGAGGTTCTAGTAAGGTTTTACACG</canonical_amplicon>
		<polymorphic_amplicon>AAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTRAAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGTTGAAGTACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGATTCTAATACAATTTGAATGAAAGTTAACCGAACTTTTTGAAGAAAACTATCCGGGAAAAATGACCTTAAATGGAAGGGTCCCTAGAATAGAAGGGCCCTCCAGAGGTTCTAGTAAGGTTTTACACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9295</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>101105</contig_pos>
        <strand>+</strand>
        <context>CAGAAAAAAG[C/T]TGAAGYACCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAG</left_flank>
        <right_flank>TGAAGTACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTAGAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCGCATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGTTGAAGTACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGATTCTAATACAATTTGAATGAAAGTTAACCGAACTTTTTGAAGAAAACTATCCGGGAAAAATGACCTTAAATGGAAGGGTCCCTAGAATAGAAGGGCCCTCCAGAGGTTCTAGTAAGGTTTTACACGCCTTTCAAAATTCATAAAGAAACCTTCACTCGAAATCTATAGATTTGCAGAAATTTTTTGAAAAAAAGCTGTTTCGCAAATTTGATGAAAAGAGAAGGCCTATTTTTGTTCCCTATTCTTTCTTTATTAGAAATAATAAATATGTATATATTGTCGAAATAAAAAAAAACTGGGACTTGAGAAGTGAAAACCGTCGCTTTTTTGATCTACGAAAAAGTGCGGCAAAATCGTAATATTTCAGACTTTTGCCTCGTCCGAGCTACTTTCGCAATTAAGTCCGGTTTTTCAATAAAAACCAGATTCTAAAAATGCTAATGAT</canonical>
            <polymorphic>ACTAGAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCGCATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGYTGAAGTACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGATTCTAATACAATTTGAATGAAAGTTAACCGAACTTTTTGAAGAAAACTATCCGGGAAAAATGACCTTAAATGGAAGGGTCCCTAGAATAGAAGGGCCCTCCAGAGGTTCTAGTAAGGTTTTACACGCCTTTCAAAATTCATAAAGAAACCTTCACTCGAAATCTATAGATTTGCAGAAATTTTTTGAAAAAAAGCTGTTTCGCAAATTTGATGAAAAGAGAAGGCCTATTTTTGTTCCCTATTCTTTCTTTATTAGAAATAATAAATATGTATATATTGTCGAAATAAAAAAAAACTGGGACTTGAGAAGTGAAAACCGTCGCTTTTTTGATCTACGAAAAAGTGCGGCAAAATCGTAATATTTCAGACTTTTGCCTCGTCCGAGCTACTTTCGCAATTAAGTCCGGTTTTTCAATAAAAACCAGATTCTAAAAATGCTAATGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACGTTTTCAGTCAAAAATACTC</pcr_primer_p1>
		<pcr_primer_p2>AAAGGCGTGTAAAACCTTACTA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGTTGAAGTACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGATTCTAATACAATTTGAATGAAAGTTAACCGAACTTTTTGAAGAAAACTATCCGGGAAAAATGACCTTAAATGGAAGGGTCCCTAGAATAGAAGGGCCCTCCAGAGGTTCTAGTAAGGTTTTACACGCCTTT</canonical_amplicon>
		<polymorphic_amplicon>CACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGYTGAAGTACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGATTCTAATACAATTTGAATGAAAGTTAACCGAACTTTTTGAAGAAAACTATCCGGGAAAAATGACCTTAAATGGAAGGGTCCCTAGAATAGAAGGGCCCTCCAGAGGTTCTAGTAAGGTTTTACACGCCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9296</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>102638</contig_pos>
        <strand>+</strand>
        <context>TAAAAAATCG[A/C]CGTTCCACGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTTAGCTGCTTGTGATTATAATATTCCTCAAGAATTGAATAAAAAATCG</left_flank>
        <right_flank>CGTTCCACGATTTCACAGAAATGCTGAAACACTATTTTTAAATTGATGAG</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCGCTCCCGTCAATCCCATTTGCGGCAGTTGAATGAGCATGAATGGGAATGGAAGAGAAGAGTAGATCAGAAGGAAGAATAAGAGACATCTTTCAACTTTCAACTTGTACTTCTGTTCAACAATTTTCAGGAAGATTTTGGAGGAAAGGTCGACAACTATGTTTTAGTGATATGACTTTTTCATTGATCTGATGAACTACTAAGGCTTTCAGGATCACTTAAGACGTTTCATTTAGTTATGGCATACCGAAACAAAAAATCATATCGGAAATTTTTAGCAGAAATGAGCTGAAATTGAAGTGGTAAAGAAGAATTTCAGAGCTTTTCTAAATATTAATTAACTAGCATGTAAACATAGAAAGAGATTACTGTAAAACCTGTATTAGAAGGGCCTTACGAGAATGATTCGAAAAATGGAAGAACCATGTAATAAAAAGGCTCCCTCAAAGTTTAGCTGCTTGTGATTATAATATTCCTCAAGAATTGAATAAAAAATCGACGTTCCACGATTTCACAGAAATGCTGAAACACTATTTTTAAATTGATGAGGAAAATTACAGAAAAAATAGAAAGGTCCCCTCTAATTGAAGGGCCCCTGTAATCGAAAGGTCCTCCGCAGGTAACTTGGACCAATAGAAGGGCCGAGCCGGCCCTTTTAATACAGGTTTTGCAGTATTCGTGATGAAACGATGGGGTTTTTTTCTGGTTGATGAAGTTTTGGACTGAAATCGTTACGTCTGCTATGAATCGAGGCGAAAATTAATGTAAAAGTTCTGCCATGGCAGTCTATTAGAGGGAATGCGAGTTCTTTTGCAATTTTTATGACATATTTATTTTGAGGCTCATGAAAAGAGAACACTGGATTTAAAATCCGACATCGAATGTTAAACTTTTGAAATAGAAAAAAATTTAAATTCGGAATTTGGAATTTATGCATTTTATGAATTCGACATATCGTATTTGCTCTCATATAAGCTCACCATCCATGTGCATTATAAT</canonical>
            <polymorphic>CTCGCTCCCGTCAATCCCATTTGCGGCAGTTGAATGAGCATGAATGGGAATGGAAGAGAAGAGTAGATCAGAAGGAAGAATAAGAGACATCTTTCAACTTTCAACTTGTACTTCTGTTCAACAATTTTCAGGAAGATTTTGGAGGAAAGGTCGACAACTATGTTTTAGTGATATGACTTTTTCATTGATCTGATGAACTACTAAGGCTTTCAGGATCACTTAAGACGTTTCATTTAGTTATGGCATACCGAAACAAAAAATCATATCGGAAATTTTTAGCAGAAATGAGCTGAAATTGAAGTGGTAAAGAAGAATTTCAGAGCTTTTCTAAATATTAATTAACTAGCATGTAAACATAGAAAGAGATTACTGTAAAACCTGTATTAGAAGGGCCTTACGAGAATGATTCGAAAAATGGAAGAACCATGTAATAAAAAGGCTCCCTCAAAGTTTAGCTGCTTGTGATTATAATATTCCTCAAGAATTGAATAAAAAATCGMCGTTCCACGATTTCACAGAAATGCTGAAACACTATTTTTAAATTGATGAGGAAAATTACAGAAAAAATAGAAAGGTCCCCTCTAATTGAAGGGCCCCTGTAATCGAAAGGTCCTCCGCAGGTAACTTGGACCAATAGAAGGGCCGAGCCGGCCCTTTTAATACAGGTTTTGCAGTATTCGTGATGAAACGATGGGGTTTTTTTCTGGTTGATGAAGTTTTGGACTGAAATCGTTACGTCTGCTATGAATCGAGGCGAAAATTAATGTAAAAGTTCTGCCATGGCAGTCTATTAGAGGGAATGCGAGTTCTTTTGCAATTTTTATGACATATTTATTTTGAGGCTCATGAAAAGAGAACACTGGATTTAAAATCCGACATCGAATGTTAAACTTTTGAAATAGAAAAAAATTTAAATTCGGAATTTGGAATTTATGCATTTTATGAATTCGACATATCGTATTTGCTCTCATATAAGCTCACCATCCATGTGCATTATAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>257 152 146 130 106 89 69 51</canonical_bands>
                <polymorphic_bands>257 195 152 146 130 69 51</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>275 265 235 225</canonical_bands>
                <polymorphic_bands>510 265 225</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAGAATTTCAGAGCTTTTCTAA</pcr_primer_p1>
		<pcr_primer_p2>TCTGTAATTTTCCTCATCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>AGAAGAATTTCAGAGCTTTTCTAAATATTAATTAACTAGCATGTAAACATAGAAAGAGATTACTGTAAAACCTGTATTAGAAGGGCCTTACGAGAATGATTCGAAAAATGGAAGAACCATGTAATAAAAAGGCTCCCTCAAAGTTTAGCTGCTTGTGATTATAATATTCCTCAAGAATTGAATAAAAAATCGACGTTCCACGATTTCACAGAAATGCTGAAACACTATTTTTAAATTGATGAGGAAAATTACAGA</canonical_amplicon>
		<polymorphic_amplicon>AGAAGAATTTCAGAGCTTTTCTAAATATTAATTAACTAGCATGTAAACATAGAAAGAGATTACTGTAAAACCTGTATTAGAAGGGCCTTACGAGAATGATTCGAAAAATGGAAGAACCATGTAATAAAAAGGCTCCCTCAAAGTTTAGCTGCTTGTGATTATAATATTCCTCAAGAATTGAATAAAAAATCGMCGTTCCACGATTTCACAGAAATGCTGAAACACTATTTTTAAATTGATGAGGAAAATTACAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9297</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>103094</contig_pos>
        <strand>+</strand>
        <context>ATTCGACATA[C/T]CGTATTTGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATTTAAATTCGGAATTTGGAATTTATGCATTTTATGAATTCGACATA</left_flank>
        <right_flank>CGTATTTGCTCTCATATAAGCTCACCATCCATGTGCATTATAATCGCAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTTGTGATTATAATATTCCTCAAGAATTGAATAAAAAATCGACGTTCCACGATTTCACAGAAATGCTGAAACACTATTTTTAAATTGATGAGGAAAATTACAGAAAAAATAGAAAGGTCCCCTCTAATTGAAGGGCCCCTGTAATCGAAAGGTCCTCCGCAGGTAACTTGGACCAATAGAAGGGCCGAGCCGGCCCTTTTAATACAGGTTTTGCAGTATTCGTGATGAAACGATGGGGTTTTTTTCTGGTTGATGAAGTTTTGGACTGAAATCGTTACGTCTGCTATGAATCGAGGCGAAAATTAATGTAAAAGTTCTGCCATGGCAGTCTATTAGAGGGAATGCGAGTTCTTTTGCAATTTTTATGACATATTTATTTTGAGGCTCATGAAAAGAGAACACTGGATTTAAAATCCGACATCGAATGTTAAACTTTTGAAATAGAAAAAAATTTAAATTCGGAATTTGGAATTTATGCATTTTATGAATTCGACATATCGTATTTGCTCTCATATAAGCTCACCATCCATGTGCATTATAATCGCAATTATATCGGTTTTTCTATCAAAAATCTGTCAACTGATAAGCTGTTAATAATATCATGATTAACATTTTATCAGTTGACTTAGTTTTATATCTTTCCTGGCAACCGGGATAATTTAGATCAAACAGGTGGATAGAGCTAATTCGGCTAAAAACAGTTAAATGCTAAGAATATGCAAAAATTCAAAATCCTAATAATTACCTTCATGAATACCAAGAACAGAATGATGAGTAGACATTTTGCTAAACTTACAAAATTTGGGAAACAGTATTTTTTTCCAAAAAATTAAAATTATAGTTTTCTCTGGTATTTAGCTTATGCCTAACCTTTGGTTTTCCAATTTTACAATTAGAAATTTCAAAAAATTAATAATTCAACTCAAAGTGCGAGTAGGTGAGCTTCTATTAGAGCGTTTACGGTAAGAGCTCTGATGTGCCAGTTTATTATAGGGAAT</canonical>
            <polymorphic>TGCTTGTGATTATAATATTCCTCAAGAATTGAATAAAAAATCGACGTTCCACGATTTCACAGAAATGCTGAAACACTATTTTTAAATTGATGAGGAAAATTACAGAAAAAATAGAAAGGTCCCCTCTAATTGAAGGGCCCCTGTAATCGAAAGGTCCTCCGCAGGTAACTTGGACCAATAGAAGGGCCGAGCCGGCCCTTTTAATACAGGTTTTGCAGTATTCGTGATGAAACGATGGGGTTTTTTTCTGGTTGATGAAGTTTTGGACTGAAATCGTTACGTCTGCTATGAATCGAGGCGAAAATTAATGTAAAAGTTCTGCCATGGCAGTCTATTAGAGGGAATGCGAGTTCTTTTGCAATTTTTATGACATATTTATTTTGAGGCTCATGAAAAGAGAACACTGGATTTAAAATCCGACATCGAATGTTAAACTTTTGAAATAGAAAAAAATTTAAATTCGGAATTTGGAATTTATGCATTTTATGAATTCGACATAYCGTATTTGCTCTCATATAAGCTCACCATCCATGTGCATTATAATCGCAATTATATCGGTTTTTCTATCAAAAATCTGTCAACTGATAAGCTGTTAATAATATCATGATTAACATTTTATCAGTTGACTTAGTTTTATATCTTTCCTGGCAACCGGGATAATTTAGATCAAACAGGTGGATAGAGCTAATTCGGCTAAAAACAGTTAAATGCTAAGAATATGCAAAAATTCAAAATCCTAATAATTACCTTCATGAATACCAAGAACAGAATGATGAGTAGACATTTTGCTAAACTTACAAAATTTGGGAAACAGTATTTTTTTCCAAAAAATTAAAATTATAGTTTTCTCTGGTATTTAGCTTATGCCTAACCTTTGGTTTTCCAATTTTACAATTAGAAATTTCAAAAAATTAATAATTCAACTCAAAGTGCGAGTAGGTGAGCTTCTATTAGAGCGTTTACGGTAAGAGCTCTGATGTGCCAGTTTATTATAGGGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGACATCGAATGTTAAACT</pcr_primer_p1>
		<pcr_primer_p2>CATATTCTTAGCATTTAACTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>305</pcr_amplicon_size>
		<canonical_amplicon>CCGACATCGAATGTTAAACTTTTGAAATAGAAAAAAATTTAAATTCGGAATTTGGAATTTATGCATTTTATGAATTCGACATATCGTATTTGCTCTCATATAAGCTCACCATCCATGTGCATTATAATCGCAATTATATCGGTTTTTCTATCAAAAATCTGTCAACTGATAAGCTGTTAATAATATCATGATTAACATTTTATCAGTTGACTTAGTTTTATATCTTTCCTGGCAACCGGGATAATTTAGATCAAACAGGTGGATAGAGCTAATTCGGCTAAAAACAGTTAAATGCTAAGAATATG</canonical_amplicon>
		<polymorphic_amplicon>CCGACATCGAATGTTAAACTTTTGAAATAGAAAAAAATTTAAATTCGGAATTTGGAATTTATGCATTTTATGAATTCGACATAYCGTATTTGCTCTCATATAAGCTCACCATCCATGTGCATTATAATCGCAATTATATCGGTTTTTCTATCAAAAATCTGTCAACTGATAAGCTGTTAATAATATCATGATTAACATTTTATCAGTTGACTTAGTTTTATATCTTTCCTGGCAACCGGGATAATTTAGATCAAACAGGTGGATAGAGCTAATTCGGCTAAAAACAGTTAAATGCTAAGAATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9298</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>103033</contig_pos>
        <strand>+</strand>
        <context>GTTAAACTTT[G/T]GAAATAGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATGAAAAGAGAACACTGGATTTAAAATCCGACATCGAATGTTAAACTTT</left_flank>
        <right_flank>GAAATAGAAAAAAATTTAAATTCGGAATTTGGAATTTATGCATTTTATGA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACGAGAATGATTCGAAAAATGGAAGAACCATGTAATAAAAAGGCTCCCTCAAAGTTTAGCTGCTTGTGATTATAATATTCCTCAAGAATTGAATAAAAAATCGACGTTCCACGATTTCACAGAAATGCTGAAACACTATTTTTAAATTGATGAGGAAAATTACAGAAAAAATAGAAAGGTCCCCTCTAATTGAAGGGCCCCTGTAATCGAAAGGTCCTCCGCAGGTAACTTGGACCAATAGAAGGGCCGAGCCGGCCCTTTTAATACAGGTTTTGCAGTATTCGTGATGAAACGATGGGGTTTTTTTCTGGTTGATGAAGTTTTGGACTGAAATCGTTACGTCTGCTATGAATCGAGGCGAAAATTAATGTAAAAGTTCTGCCATGGCAGTCTATTAGAGGGAATGCGAGTTCTTTTGCAATTTTTATGACATATTTATTTTGAGGCTCATGAAAAGAGAACACTGGATTTAAAATCCGACATCGAATGTTAAACTTTTGAAATAGAAAAAAATTTAAATTCGGAATTTGGAATTTATGCATTTTATGAATTCGACATATCGTATTTGCTCTCATATAAGCTCACCATCCATGTGCATTATAATCGCAATTATATCGGTTTTTCTATCAAAAATCTGTCAACTGATAAGCTGTTAATAATATCATGATTAACATTTTATCAGTTGACTTAGTTTTATATCTTTCCTGGCAACCGGGATAATTTAGATCAAACAGGTGGATAGAGCTAATTCGGCTAAAAACAGTTAAATGCTAAGAATATGCAAAAATTCAAAATCCTAATAATTACCTTCATGAATACCAAGAACAGAATGATGAGTAGACATTTTGCTAAACTTACAAAATTTGGGAAACAGTATTTTTTTCCAAAAAATTAAAATTATAGTTTTCTCTGGTATTTAGCTTATGCCTAACCTTTGGTTTTCCAATTTTACAATTAGAAATTTCAAAAAATTAATAATTCAACTCAAAGTGCGAGTAG</canonical>
            <polymorphic>TACGAGAATGATTCGAAAAATGGAAGAACCATGTAATAAAAAGGCTCCCTCAAAGTTTAGCTGCTTGTGATTATAATATTCCTCAAGAATTGAATAAAAAATCGACGTTCCACGATTTCACAGAAATGCTGAAACACTATTTTTAAATTGATGAGGAAAATTACAGAAAAAATAGAAAGGTCCCCTCTAATTGAAGGGCCCCTGTAATCGAAAGGTCCTCCGCAGGTAACTTGGACCAATAGAAGGGCCGAGCCGGCCCTTTTAATACAGGTTTTGCAGTATTCGTGATGAAACGATGGGGTTTTTTTCTGGTTGATGAAGTTTTGGACTGAAATCGTTACGTCTGCTATGAATCGAGGCGAAAATTAATGTAAAAGTTCTGCCATGGCAGTCTATTAGAGGGAATGCGAGTTCTTTTGCAATTTTTATGACATATTTATTTTGAGGCTCATGAAAAGAGAACACTGGATTTAAAATCCGACATCGAATGTTAAACTTTKGAAATAGAAAAAAATTTAAATTCGGAATTTGGAATTTATGCATTTTATGAATTCGACATATCGTATTTGCTCTCATATAAGCTCACCATCCATGTGCATTATAATCGCAATTATATCGGTTTTTCTATCAAAAATCTGTCAACTGATAAGCTGTTAATAATATCATGATTAACATTTTATCAGTTGACTTAGTTTTATATCTTTCCTGGCAACCGGGATAATTTAGATCAAACAGGTGGATAGAGCTAATTCGGCTAAAAACAGTTAAATGCTAAGAATATGCAAAAATTCAAAATCCTAATAATTACCTTCATGAATACCAAGAACAGAATGATGAGTAGACATTTTGCTAAACTTACAAAATTTGGGAAACAGTATTTTTTTCCAAAAAATTAAAATTATAGTTTTCTCTGGTATTTAGCTTATGCCTAACCTTTGGTTTTCCAATTTTACAATTAGAAATTTCAAAAAATTAATAATTCAACTCAAAGTGCGAGTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGAAGTTTTGGACTGAAATC</pcr_primer_p1>
		<pcr_primer_p2>GTCGAATTCATAAAATGCATAAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GATGAAGTTTTGGACTGAAATCGTTACGTCTGCTATGAATCGAGGCGAAAATTAATGTAAAAGTTCTGCCATGGCAGTCTATTAGAGGGAATGCGAGTTCTTTTGCAATTTTTATGACATATTTATTTTGAGGCTCATGAAAAGAGAACACTGGATTTAAAATCCGACATCGAATGTTAAACTTTTGAAATAGAAAAAAATTTAAATTCGGAATTTGGAATTTATGCATTTTATGAATTCGAC</canonical_amplicon>
		<polymorphic_amplicon>GATGAAGTTTTGGACTGAAATCGTTACGTCTGCTATGAATCGAGGCGAAAATTAATGTAAAAGTTCTGCCATGGCAGTCTATTAGAGGGAATGCGAGTTCTTTTGCAATTTTTATGACATATTTATTTTGAGGCTCATGAAAAGAGAACACTGGATTTAAAATCCGACATCGAATGTTAAACTTTKGAAATAGAAAAAAATTTAAATTCGGAATTTGGAATTTATGCATTTTATGAATTCGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9299</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>102921</contig_pos>
        <strand>+</strand>
        <context>TTCTGCCATG[A/G]CAGTCTATTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTACGTCTGCTATGAATCGAGGCGAAAATTAATGTAAAAGTTCTGCCATG</left_flank>
        <right_flank>CAGTCTATTAGAGGGAATGCGAGTTCTTTTGCAATTTTTATGACATATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGAGCTGAAATTGAAGTGGTAAAGAAGAATTTCAGAGCTTTTCTAAATATTAATTAACTAGCATGTAAACATAGAAAGAGATTACTGTAAAACCTGTATTAGAAGGGCCTTACGAGAATGATTCGAAAAATGGAAGAACCATGTAATAAAAAGGCTCCCTCAAAGTTTAGCTGCTTGTGATTATAATATTCCTCAAGAATTGAATAAAAAATCGACGTTCCACGATTTCACAGAAATGCTGAAACACTATTTTTAAATTGATGAGGAAAATTACAGAAAAAATAGAAAGGTCCCCTCTAATTGAAGGGCCCCTGTAATCGAAAGGTCCTCCGCAGGTAACTTGGACCAATAGAAGGGCCGAGCCGGCCCTTTTAATACAGGTTTTGCAGTATTCGTGATGAAACGATGGGGTTTTTTTCTGGTTGATGAAGTTTTGGACTGAAATCGTTACGTCTGCTATGAATCGAGGCGAAAATTAATGTAAAAGTTCTGCCATGGCAGTCTATTAGAGGGAATGCGAGTTCTTTTGCAATTTTTATGACATATTTATTTTGAGGCTCATGAAAAGAGAACACTGGATTTAAAATCCGACATCGAATGTTAAACTTTTGAAATAGAAAAAAATTTAAATTCGGAATTTGGAATTTATGCATTTTATGAATTCGACATATCGTATTTGCTCTCATATAAGCTCACCATCCATGTGCATTATAATCGCAATTATATCGGTTTTTCTATCAAAAATCTGTCAACTGATAAGCTGTTAATAATATCATGATTAACATTTTATCAGTTGACTTAGTTTTATATCTTTCCTGGCAACCGGGATAATTTAGATCAAACAGGTGGATAGAGCTAATTCGGCTAAAAACAGTTAAATGCTAAGAATATGCAAAAATTCAAAATCCTAATAATTACCTTCATGAATACCAAGAACAGAATGATGAGTAGACATTTTGCTAAACTTACAAAATTTGGGAAACAGTATTTTTTTCCAA</canonical>
            <polymorphic>AATGAGCTGAAATTGAAGTGGTAAAGAAGAATTTCAGAGCTTTTCTAAATATTAATTAACTAGCATGTAAACATAGAAAGAGATTACTGTAAAACCTGTATTAGAAGGGCCTTACGAGAATGATTCGAAAAATGGAAGAACCATGTAATAAAAAGGCTCCCTCAAAGTTTAGCTGCTTGTGATTATAATATTCCTCAAGAATTGAATAAAAAATCGACGTTCCACGATTTCACAGAAATGCTGAAACACTATTTTTAAATTGATGAGGAAAATTACAGAAAAAATAGAAAGGTCCCCTCTAATTGAAGGGCCCCTGTAATCGAAAGGTCCTCCGCAGGTAACTTGGACCAATAGAAGGGCCGAGCCGGCCCTTTTAATACAGGTTTTGCAGTATTCGTGATGAAACGATGGGGTTTTTTTCTGGTTGATGAAGTTTTGGACTGAAATCGTTACGTCTGCTATGAATCGAGGCGAAAATTAATGTAAAAGTTCTGCCATGRCAGTCTATTAGAGGGAATGCGAGTTCTTTTGCAATTTTTATGACATATTTATTTTGAGGCTCATGAAAAGAGAACACTGGATTTAAAATCCGACATCGAATGTTAAACTTTTGAAATAGAAAAAAATTTAAATTCGGAATTTGGAATTTATGCATTTTATGAATTCGACATATCGTATTTGCTCTCATATAAGCTCACCATCCATGTGCATTATAATCGCAATTATATCGGTTTTTCTATCAAAAATCTGTCAACTGATAAGCTGTTAATAATATCATGATTAACATTTTATCAGTTGACTTAGTTTTATATCTTTCCTGGCAACCGGGATAATTTAGATCAAACAGGTGGATAGAGCTAATTCGGCTAAAAACAGTTAAATGCTAAGAATATGCAAAAATTCAAAATCCTAATAATTACCTTCATGAATACCAAGAACAGAATGATGAGTAGACATTTTGCTAAACTTACAAAATTTGGGAAACAGTATTTTTTTCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCATGG</site>
                <isoschizomers>
                    <enzyme>Bsp19I</enzyme>
                    <enzyme>NcoI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGTAACTTGGACCAATAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TAAATCCAGTGTTCTCTTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGTAACTTGGACCAATAGAAGGGCCGAGCCGGCCCTTTTAATACAGGTTTTGCAGTATTCGTGATGAAACGATGGGGTTTTTTTCTGGTTGATGAAGTTTTGGACTGAAATCGTTACGTCTGCTATGAATCGAGGCGAAAATTAATGTAAAAGTTCTGCCATGGCAGTCTATTAGAGGGAATGCGAGTTCTTTTGCAATTTTTATGACATATTTATTTTGAGGCTCATGAAAAGAGAACACTGGATTTA</canonical_amplicon>
		<polymorphic_amplicon>AGGTAACTTGGACCAATAGAAGGGCCGAGCCGGCCCTTTTAATACAGGTTTTGCAGTATTCGTGATGAAACGATGGGGTTTTTTTCTGGTTGATGAAGTTTTGGACTGAAATCGTTACGTCTGCTATGAATCGAGGCGAAAATTAATGTAAAAGTTCTGCCATGRCAGTCTATTAGAGGGAATGCGAGTTCTTTTGCAATTTTTATGACATATTTATTTTGAGGCTCATGAAAAGAGAACACTGGATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9300</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>102893</contig_pos>
        <strand>+</strand>
        <context>TGAATCGAGG[C/T]GAAAATTAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGTTGATGAAGTTTTGGACTGAAATCGTTACGTCTGCTATGAATCGAGG</left_flank>
        <right_flank>GAAAATTAATGTAAAAGTTCTGCCATGGCAGTCTATTAGAGGGAATGCGA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATCATATCGGAAATTTTTAGCAGAAATGAGCTGAAATTGAAGTGGTAAAGAAGAATTTCAGAGCTTTTCTAAATATTAATTAACTAGCATGTAAACATAGAAAGAGATTACTGTAAAACCTGTATTAGAAGGGCCTTACGAGAATGATTCGAAAAATGGAAGAACCATGTAATAAAAAGGCTCCCTCAAAGTTTAGCTGCTTGTGATTATAATATTCCTCAAGAATTGAATAAAAAATCGACGTTCCACGATTTCACAGAAATGCTGAAACACTATTTTTAAATTGATGAGGAAAATTACAGAAAAAATAGAAAGGTCCCCTCTAATTGAAGGGCCCCTGTAATCGAAAGGTCCTCCGCAGGTAACTTGGACCAATAGAAGGGCCGAGCCGGCCCTTTTAATACAGGTTTTGCAGTATTCGTGATGAAACGATGGGGTTTTTTTCTGGTTGATGAAGTTTTGGACTGAAATCGTTACGTCTGCTATGAATCGAGGCGAAAATTAATGTAAAAGTTCTGCCATGGCAGTCTATTAGAGGGAATGCGAGTTCTTTTGCAATTTTTATGACATATTTATTTTGAGGCTCATGAAAAGAGAACACTGGATTTAAAATCCGACATCGAATGTTAAACTTTTGAAATAGAAAAAAATTTAAATTCGGAATTTGGAATTTATGCATTTTATGAATTCGACATATCGTATTTGCTCTCATATAAGCTCACCATCCATGTGCATTATAATCGCAATTATATCGGTTTTTCTATCAAAAATCTGTCAACTGATAAGCTGTTAATAATATCATGATTAACATTTTATCAGTTGACTTAGTTTTATATCTTTCCTGGCAACCGGGATAATTTAGATCAAACAGGTGGATAGAGCTAATTCGGCTAAAAACAGTTAAATGCTAAGAATATGCAAAAATTCAAAATCCTAATAATTACCTTCATGAATACCAAGAACAGAATGATGAGTAGACATTTTGCTAAACTTACA</canonical>
            <polymorphic>AAAAATCATATCGGAAATTTTTAGCAGAAATGAGCTGAAATTGAAGTGGTAAAGAAGAATTTCAGAGCTTTTCTAAATATTAATTAACTAGCATGTAAACATAGAAAGAGATTACTGTAAAACCTGTATTAGAAGGGCCTTACGAGAATGATTCGAAAAATGGAAGAACCATGTAATAAAAAGGCTCCCTCAAAGTTTAGCTGCTTGTGATTATAATATTCCTCAAGAATTGAATAAAAAATCGACGTTCCACGATTTCACAGAAATGCTGAAACACTATTTTTAAATTGATGAGGAAAATTACAGAAAAAATAGAAAGGTCCCCTCTAATTGAAGGGCCCCTGTAATCGAAAGGTCCTCCGCAGGTAACTTGGACCAATAGAAGGGCCGAGCCGGCCCTTTTAATACAGGTTTTGCAGTATTCGTGATGAAACGATGGGGTTTTTTTCTGGTTGATGAAGTTTTGGACTGAAATCGTTACGTCTGCTATGAATCGAGGYGAAAATTAATGTAAAAGTTCTGCCATGGCAGTCTATTAGAGGGAATGCGAGTTCTTTTGCAATTTTTATGACATATTTATTTTGAGGCTCATGAAAAGAGAACACTGGATTTAAAATCCGACATCGAATGTTAAACTTTTGAAATAGAAAAAAATTTAAATTCGGAATTTGGAATTTATGCATTTTATGAATTCGACATATCGTATTTGCTCTCATATAAGCTCACCATCCATGTGCATTATAATCGCAATTATATCGGTTTTTCTATCAAAAATCTGTCAACTGATAAGCTGTTAATAATATCATGATTAACATTTTATCAGTTGACTTAGTTTTATATCTTTCCTGGCAACCGGGATAATTTAGATCAAACAGGTGGATAGAGCTAATTCGGCTAAAAACAGTTAAATGCTAAGAATATGCAAAAATTCAAAATCCTAATAATTACCTTCATGAATACCAAGAACAGAATGATGAGTAGACATTTTGCTAAACTTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGTAACTTGGACCAATAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TAAATCCAGTGTTCTCTTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGTAACTTGGACCAATAGAAGGGCCGAGCCGGCCCTTTTAATACAGGTTTTGCAGTATTCGTGATGAAACGATGGGGTTTTTTTCTGGTTGATGAAGTTTTGGACTGAAATCGTTACGTCTGCTATGAATCGAGGCGAAAATTAATGTAAAAGTTCTGCCATGGCAGTCTATTAGAGGGAATGCGAGTTCTTTTGCAATTTTTATGACATATTTATTTTGAGGCTCATGAAAAGAGAACACTGGATTTA</canonical_amplicon>
		<polymorphic_amplicon>AGGTAACTTGGACCAATAGAAGGGCCGAGCCGGCCCTTTTAATACAGGTTTTGCAGTATTCGTGATGAAACGATGGGGTTTTTTTCTGGTTGATGAAGTTTTGGACTGAAATCGTTACGTCTGCTATGAATCGAGGYGAAAATTAATGTAAAAGTTCTGCCATGGCAGTCTATTAGAGGGAATGCGAGTTCTTTTGCAATTTTTATGACATATTTATTTTGAGGCTCATGAAAAGAGAACACTGGATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9301</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>102881</contig_pos>
        <strand>+</strand>
        <context>TTACGTCTGC[C/T]ATGAATCGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGGTTTTTTTCTGGTTGATGAAGTTTTGGACTGAAATCGTTACGTCTGC</left_flank>
        <right_flank>ATGAATCGAGGCGAAAATTAATGTAAAAGTTCTGCCATGGCAGTCTATTA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATACCGAAACAAAAAATCATATCGGAAATTTTTAGCAGAAATGAGCTGAAATTGAAGTGGTAAAGAAGAATTTCAGAGCTTTTCTAAATATTAATTAACTAGCATGTAAACATAGAAAGAGATTACTGTAAAACCTGTATTAGAAGGGCCTTACGAGAATGATTCGAAAAATGGAAGAACCATGTAATAAAAAGGCTCCCTCAAAGTTTAGCTGCTTGTGATTATAATATTCCTCAAGAATTGAATAAAAAATCGACGTTCCACGATTTCACAGAAATGCTGAAACACTATTTTTAAATTGATGAGGAAAATTACAGAAAAAATAGAAAGGTCCCCTCTAATTGAAGGGCCCCTGTAATCGAAAGGTCCTCCGCAGGTAACTTGGACCAATAGAAGGGCCGAGCCGGCCCTTTTAATACAGGTTTTGCAGTATTCGTGATGAAACGATGGGGTTTTTTTCTGGTTGATGAAGTTTTGGACTGAAATCGTTACGTCTGCTATGAATCGAGGCGAAAATTAATGTAAAAGTTCTGCCATGGCAGTCTATTAGAGGGAATGCGAGTTCTTTTGCAATTTTTATGACATATTTATTTTGAGGCTCATGAAAAGAGAACACTGGATTTAAAATCCGACATCGAATGTTAAACTTTTGAAATAGAAAAAAATTTAAATTCGGAATTTGGAATTTATGCATTTTATGAATTCGACATATCGTATTTGCTCTCATATAAGCTCACCATCCATGTGCATTATAATCGCAATTATATCGGTTTTTCTATCAAAAATCTGTCAACTGATAAGCTGTTAATAATATCATGATTAACATTTTATCAGTTGACTTAGTTTTATATCTTTCCTGGCAACCGGGATAATTTAGATCAAACAGGTGGATAGAGCTAATTCGGCTAAAAACAGTTAAATGCTAAGAATATGCAAAAATTCAAAATCCTAATAATTACCTTCATGAATACCAAGAACAGAATGATGAGTAGACATTTT</canonical>
            <polymorphic>CATACCGAAACAAAAAATCATATCGGAAATTTTTAGCAGAAATGAGCTGAAATTGAAGTGGTAAAGAAGAATTTCAGAGCTTTTCTAAATATTAATTAACTAGCATGTAAACATAGAAAGAGATTACTGTAAAACCTGTATTAGAAGGGCCTTACGAGAATGATTCGAAAAATGGAAGAACCATGTAATAAAAAGGCTCCCTCAAAGTTTAGCTGCTTGTGATTATAATATTCCTCAAGAATTGAATAAAAAATCGACGTTCCACGATTTCACAGAAATGCTGAAACACTATTTTTAAATTGATGAGGAAAATTACAGAAAAAATAGAAAGGTCCCCTCTAATTGAAGGGCCCCTGTAATCGAAAGGTCCTCCGCAGGTAACTTGGACCAATAGAAGGGCCGAGCCGGCCCTTTTAATACAGGTTTTGCAGTATTCGTGATGAAACGATGGGGTTTTTTTCTGGTTGATGAAGTTTTGGACTGAAATCGTTACGTCTGCYATGAATCGAGGCGAAAATTAATGTAAAAGTTCTGCCATGGCAGTCTATTAGAGGGAATGCGAGTTCTTTTGCAATTTTTATGACATATTTATTTTGAGGCTCATGAAAAGAGAACACTGGATTTAAAATCCGACATCGAATGTTAAACTTTTGAAATAGAAAAAAATTTAAATTCGGAATTTGGAATTTATGCATTTTATGAATTCGACATATCGTATTTGCTCTCATATAAGCTCACCATCCATGTGCATTATAATCGCAATTATATCGGTTTTTCTATCAAAAATCTGTCAACTGATAAGCTGTTAATAATATCATGATTAACATTTTATCAGTTGACTTAGTTTTATATCTTTCCTGGCAACCGGGATAATTTAGATCAAACAGGTGGATAGAGCTAATTCGGCTAAAAACAGTTAAATGCTAAGAATATGCAAAAATTCAAAATCCTAATAATTACCTTCATGAATACCAAGAACAGAATGATGAGTAGACATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGTAACTTGGACCAATAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TAAATCCAGTGTTCTCTTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGTAACTTGGACCAATAGAAGGGCCGAGCCGGCCCTTTTAATACAGGTTTTGCAGTATTCGTGATGAAACGATGGGGTTTTTTTCTGGTTGATGAAGTTTTGGACTGAAATCGTTACGTCTGCTATGAATCGAGGCGAAAATTAATGTAAAAGTTCTGCCATGGCAGTCTATTAGAGGGAATGCGAGTTCTTTTGCAATTTTTATGACATATTTATTTTGAGGCTCATGAAAAGAGAACACTGGATTTA</canonical_amplicon>
		<polymorphic_amplicon>AGGTAACTTGGACCAATAGAAGGGCCGAGCCGGCCCTTTTAATACAGGTTTTGCAGTATTCGTGATGAAACGATGGGGTTTTTTTCTGGTTGATGAAGTTTTGGACTGAAATCGTTACGTCTGCYATGAATCGAGGCGAAAATTAATGTAAAAGTTCTGCCATGGCAGTCTATTAGAGGGAATGCGAGTTCTTTTGCAATTTTTATGACATATTTATTTTGAGGCTCATGAAAAGAGAACACTGGATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9302</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>102827</contig_pos>
        <strand>+</strand>
        <context>CGTGATGAAA[C/G]GATGGGGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGGGCCGAGCCGGCCCTTTTAATACAGGTTTTGCAGTATTCGTGATGAAA</left_flank>
        <right_flank>GATGGGGTTTTTTTCTGGTTGATGAAGTTTTGGACTGAAATCGTTACGTC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGATGAACTACTAAGGCTTTCAGGATCACTTAAGACGTTTCATTTAGTTATGGCATACCGAAACAAAAAATCATATCGGAAATTTTTAGCAGAAATGAGCTGAAATTGAAGTGGTAAAGAAGAATTTCAGAGCTTTTCTAAATATTAATTAACTAGCATGTAAACATAGAAAGAGATTACTGTAAAACCTGTATTAGAAGGGCCTTACGAGAATGATTCGAAAAATGGAAGAACCATGTAATAAAAAGGCTCCCTCAAAGTTTAGCTGCTTGTGATTATAATATTCCTCAAGAATTGAATAAAAAATCGACGTTCCACGATTTCACAGAAATGCTGAAACACTATTTTTAAATTGATGAGGAAAATTACAGAAAAAATAGAAAGGTCCCCTCTAATTGAAGGGCCCCTGTAATCGAAAGGTCCTCCGCAGGTAACTTGGACCAATAGAAGGGCCGAGCCGGCCCTTTTAATACAGGTTTTGCAGTATTCGTGATGAAACGATGGGGTTTTTTTCTGGTTGATGAAGTTTTGGACTGAAATCGTTACGTCTGCTATGAATCGAGGCGAAAATTAATGTAAAAGTTCTGCCATGGCAGTCTATTAGAGGGAATGCGAGTTCTTTTGCAATTTTTATGACATATTTATTTTGAGGCTCATGAAAAGAGAACACTGGATTTAAAATCCGACATCGAATGTTAAACTTTTGAAATAGAAAAAAATTTAAATTCGGAATTTGGAATTTATGCATTTTATGAATTCGACATATCGTATTTGCTCTCATATAAGCTCACCATCCATGTGCATTATAATCGCAATTATATCGGTTTTTCTATCAAAAATCTGTCAACTGATAAGCTGTTAATAATATCATGATTAACATTTTATCAGTTGACTTAGTTTTATATCTTTCCTGGCAACCGGGATAATTTAGATCAAACAGGTGGATAGAGCTAATTCGGCTAAAAACAGTTAAATGCTAAGAATATGCAAAAATTCAAA</canonical>
            <polymorphic>CTGATGAACTACTAAGGCTTTCAGGATCACTTAAGACGTTTCATTTAGTTATGGCATACCGAAACAAAAAATCATATCGGAAATTTTTAGCAGAAATGAGCTGAAATTGAAGTGGTAAAGAAGAATTTCAGAGCTTTTCTAAATATTAATTAACTAGCATGTAAACATAGAAAGAGATTACTGTAAAACCTGTATTAGAAGGGCCTTACGAGAATGATTCGAAAAATGGAAGAACCATGTAATAAAAAGGCTCCCTCAAAGTTTAGCTGCTTGTGATTATAATATTCCTCAAGAATTGAATAAAAAATCGACGTTCCACGATTTCACAGAAATGCTGAAACACTATTTTTAAATTGATGAGGAAAATTACAGAAAAAATAGAAAGGTCCCCTCTAATTGAAGGGCCCCTGTAATCGAAAGGTCCTCCGCAGGTAACTTGGACCAATAGAAGGGCCGAGCCGGCCCTTTTAATACAGGTTTTGCAGTATTCGTGATGAAASGATGGGGTTTTTTTCTGGTTGATGAAGTTTTGGACTGAAATCGTTACGTCTGCTATGAATCGAGGCGAAAATTAATGTAAAAGTTCTGCCATGGCAGTCTATTAGAGGGAATGCGAGTTCTTTTGCAATTTTTATGACATATTTATTTTGAGGCTCATGAAAAGAGAACACTGGATTTAAAATCCGACATCGAATGTTAAACTTTTGAAATAGAAAAAAATTTAAATTCGGAATTTGGAATTTATGCATTTTATGAATTCGACATATCGTATTTGCTCTCATATAAGCTCACCATCCATGTGCATTATAATCGCAATTATATCGGTTTTTCTATCAAAAATCTGTCAACTGATAAGCTGTTAATAATATCATGATTAACATTTTATCAGTTGACTTAGTTTTATATCTTTCCTGGCAACCGGGATAATTTAGATCAAACAGGTGGATAGAGCTAATTCGGCTAAAAACAGTTAAATGCTAAGAATATGCAAAAATTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGTAACTTGGACCAATAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TAAATCCAGTGTTCTCTTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGTAACTTGGACCAATAGAAGGGCCGAGCCGGCCCTTTTAATACAGGTTTTGCAGTATTCGTGATGAAACGATGGGGTTTTTTTCTGGTTGATGAAGTTTTGGACTGAAATCGTTACGTCTGCTATGAATCGAGGCGAAAATTAATGTAAAAGTTCTGCCATGGCAGTCTATTAGAGGGAATGCGAGTTCTTTTGCAATTTTTATGACATATTTATTTTGAGGCTCATGAAAAGAGAACACTGGATTTA</canonical_amplicon>
		<polymorphic_amplicon>AGGTAACTTGGACCAATAGAAGGGCCGAGCCGGCCCTTTTAATACAGGTTTTGCAGTATTCGTGATGAAASGATGGGGTTTTTTTCTGGTTGATGAAGTTTTGGACTGAAATCGTTACGTCTGCTATGAATCGAGGCGAAAATTAATGTAAAAGTTCTGCCATGGCAGTCTATTAGAGGGAATGCGAGTTCTTTTGCAATTTTTATGACATATTTATTTTGAGGCTCATGAAAAGAGAACACTGGATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9303</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>110798</contig_pos>
        <strand>+</strand>
        <context>AACTTCTGAA[C/T]CRATTTTGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGATTCACAGTAAACATTCTCTGAAACTTCAACAATCCAGAACTTCTGAA</left_flank>
        <right_flank>CGATTTTGAGGTCCGCAAAAAATCGCCTTCCGCGTTTTCAAATTTAAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAACTAACTAGTAACGAAAAAAAGGGTGTTACAAATTAAACATAAAAAAGGTAGTCAGTGTTATTTGATTAGAGATACCAAGTACTAGAGAGAACTACACGAAAAGAACAAGAAGAAGAAGAAGAAGAAGGAAAAGGACAGTGTGGGAAAGCAGAGGGAATGATCGAAAAATAAACAGAAAATCATGGGGGGACGACGAACAGAATAAAGAGTGACGAGAGAATGGGAATAGAGAAAATAGAACGAGATGCACTAATACTATTATGGTCAGTGTCGAGTCGACGGCGGGGGGATGAGCTCACTGTGTCTGTGTTACAACAAAATAACACAATTACGAAATGTATTGGAAGGTTTTGAACGTCTAGAAGTAGCTTGATCAATAGCTAAGTGGGTATTGAGACATTATTATTTTTTTAGAATTCAAGGAAGTGTTGAAATAGAACATTTTGATTCACAGTAAACATTCTCTGAAACTTCAACAATCCAGAACTTCTGAATCGATTTTGAGGTCCGCAAAAAATCGCCTTCCGCGTTTTCAAATTTAAAAATACAGTTTTTCACAAAGCTGTCTCGAATTTCTTCATTAAAATGACTGCTAAATTAGTAATTTTGGGATCAGCATAGTTATGTTTTTTTGACAGTCATAAACTATTTGAAACAGGGAAATCATAACTTAAACGTAATTTGGTAACGTCAGAACTTTGAAAAGACATTTCATAAAACTACCATATTTGCTTCAATAGAAGCCCATCCCATACGTTCACTTTGAACTCAATTATCTCGGTTCTTATGAGAGGTATCAAAAGTCTATCAATTAATAAAATACTGGCGATATTTTGACTAACATTTTACAAATTCACAAATTCTTGTTATCTCTTACAGAATTGAGATAATTGAGCTCAAAGTGCATAGAGAGGTCGTTTATCTGTGTTTACGGTCTACGATCTGAGTCAGATCATCATCTGACTATGAGTAATTTTATTAAGCATGACTAGTTT</canonical>
            <polymorphic>ATAAACTAACTAGTAACGAAAAAAAGGGTGTTACAAATTAAACATAAAAAAGGTAGTCAGTGTTATTTGATTAGAGATACCAAGTACTAGAGAGAACTACACGAAAAGAACAAGAAGAAGAAGAAGAAGAAGGAAAAGGACAGTGTGGGAAAGCAGAGGGAATGATCGAAAAATAAACAGAAAATCATGGGGGGACGACGAACAGAATAAAGAGTGACGAGAGAATGGGAATAGAGAAAATAGAACGAGATGCACTAATACTATTATGGTCAGTGTCGAGTCGACGGCGGGGGGATGAGCTCACTGTGTCTGTGTTACAACAAAATAACACAATTACGAAATGTATTGGAAGGTTTTGAACGTCTAGAAGTAGCTTGATCAATAGCTAAGTGGGTATTGAGACATTATTATTTTTTTAGAATTCAAGGAAGTGTTGAAATAGAACATTTTGATTCACAGTAAACATTCTCTGAAACTTCAACAATCCAGAACTTCTGAAYCGATTTTGAGGTCCGCAAAAAATCGCCTTCCGCGTTTTCAAATTTAAAAATACAGTTTTTCACAAAGCTGTCTCGAATTTCTTCATTAAAATGACTGCTAAATTAGTAATTTTGGGATCAGCATAGTTATGTTTTTTTGACAGTCATAAACTATTTGAAACAGGGAAATCATAACTTAAACGTAATTTGGTAACGTCAGAACTTTGAAAAGACATTTCATAAAACTACCATATTTGCTTCAATAGAAGCCCATCCCATACGTTCACTTTGAACTCAATTATCTCGGTTCTTATGAGAGGTATCAAAAGTCTATCAATTAATAAAATACTGGCGATATTTTGACTAACATTTTACAAATTCACAAATTCTTGTTATCTCTTACAGAATTGAGATAATTGAGCTCAAAGTGCATAGAGAGGTCGTTTATCTGTGTTTACGGTCTACGATCTGAGTCAGATCATCATCTGACTATGAGTAATTTTATTAAGCATGACTAGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>426 219 167 110 73 5</canonical_bands>
                <polymorphic_bands>426 292 167 110 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>453 278 173 50 46</canonical_bands>
                <polymorphic_bands>499 278 173 50</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 451 46</canonical_bands>
                <polymorphic_bands>549 451</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTCAAGGAAGTGTTGAAATA</pcr_primer_p1>
		<pcr_primer_p2>TTCCCTGTTTCAAATAGTTTATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAATTCAAGGAAGTGTTGAAATAGAACATTTTGATTCACAGTAAACATTCTCTGAAACTTCAACAATCCAGAACTTCTGAATCGATTTTGAGGTCCGCAAAAAATCGCCTTCCGCGTTTTCAAATTTAAAAATACAGTTTTTCACAAAGCTGTCTCGAATTTCTTCATTAAAATGACTGCTAAATTAGTAATTTTGGGATCAGCATAGTTATGTTTTTTTGACAGTCATAAACTATTTGAAACAGGGAA</canonical_amplicon>
		<polymorphic_amplicon>GAATTCAAGGAAGTGTTGAAATAGAACATTTTGATTCACAGTAAACATTCTCTGAAACTTCAACAATCCAGAACTTCTGAAYCGATTTTGAGGTCCGCAAAAAATCGCCTTCCGCGTTTTCAAATTTAAAAATACAGTTTTTCACAAAGCTGTCTCGAATTTCTTCATTAAAATGACTGCTAAATTAGTAATTTTGGGATCAGCATAGTTATGTTTTTTTGACAGTCATAAACTATTTGAAACAGGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9304</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>110800</contig_pos>
        <strand>+</strand>
        <context>CTTCTGAAYC[A/G]ATTTTGAGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCACAGTAAACATTCTCTGAAACTTCAACAATCCAGAACTTCTGAATC</left_flank>
        <right_flank>ATTTTGAGGTCCGCAAAAAATCGCCTTCCGCGTTTTCAAATTTAAAAATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTAACTAGTAACGAAAAAAAGGGTGTTACAAATTAAACATAAAAAAGGTAGTCAGTGTTATTTGATTAGAGATACCAAGTACTAGAGAGAACTACACGAAAAGAACAAGAAGAAGAAGAAGAAGAAGGAAAAGGACAGTGTGGGAAAGCAGAGGGAATGATCGAAAAATAAACAGAAAATCATGGGGGGACGACGAACAGAATAAAGAGTGACGAGAGAATGGGAATAGAGAAAATAGAACGAGATGCACTAATACTATTATGGTCAGTGTCGAGTCGACGGCGGGGGGATGAGCTCACTGTGTCTGTGTTACAACAAAATAACACAATTACGAAATGTATTGGAAGGTTTTGAACGTCTAGAAGTAGCTTGATCAATAGCTAAGTGGGTATTGAGACATTATTATTTTTTTAGAATTCAAGGAAGTGTTGAAATAGAACATTTTGATTCACAGTAAACATTCTCTGAAACTTCAACAATCCAGAACTTCTGAATCGATTTTGAGGTCCGCAAAAAATCGCCTTCCGCGTTTTCAAATTTAAAAATACAGTTTTTCACAAAGCTGTCTCGAATTTCTTCATTAAAATGACTGCTAAATTAGTAATTTTGGGATCAGCATAGTTATGTTTTTTTGACAGTCATAAACTATTTGAAACAGGGAAATCATAACTTAAACGTAATTTGGTAACGTCAGAACTTTGAAAAGACATTTCATAAAACTACCATATTTGCTTCAATAGAAGCCCATCCCATACGTTCACTTTGAACTCAATTATCTCGGTTCTTATGAGAGGTATCAAAAGTCTATCAATTAATAAAATACTGGCGATATTTTGACTAACATTTTACAAATTCACAAATTCTTGTTATCTCTTACAGAATTGAGATAATTGAGCTCAAAGTGCATAGAGAGGTCGTTTATCTGTGTTTACGGTCTACGATCTGAGTCAGATCATCATCTGACTATGAGTAATTTTATTAAGCATGACTAGTTTTT</canonical>
            <polymorphic>AAACTAACTAGTAACGAAAAAAAGGGTGTTACAAATTAAACATAAAAAAGGTAGTCAGTGTTATTTGATTAGAGATACCAAGTACTAGAGAGAACTACACGAAAAGAACAAGAAGAAGAAGAAGAAGAAGGAAAAGGACAGTGTGGGAAAGCAGAGGGAATGATCGAAAAATAAACAGAAAATCATGGGGGGACGACGAACAGAATAAAGAGTGACGAGAGAATGGGAATAGAGAAAATAGAACGAGATGCACTAATACTATTATGGTCAGTGTCGAGTCGACGGCGGGGGGATGAGCTCACTGTGTCTGTGTTACAACAAAATAACACAATTACGAAATGTATTGGAAGGTTTTGAACGTCTAGAAGTAGCTTGATCAATAGCTAAGTGGGTATTGAGACATTATTATTTTTTTAGAATTCAAGGAAGTGTTGAAATAGAACATTTTGATTCACAGTAAACATTCTCTGAAACTTCAACAATCCAGAACTTCTGAATCRATTTTGAGGTCCGCAAAAAATCGCCTTCCGCGTTTTCAAATTTAAAAATACAGTTTTTCACAAAGCTGTCTCGAATTTCTTCATTAAAATGACTGCTAAATTAGTAATTTTGGGATCAGCATAGTTATGTTTTTTTGACAGTCATAAACTATTTGAAACAGGGAAATCATAACTTAAACGTAATTTGGTAACGTCAGAACTTTGAAAAGACATTTCATAAAACTACCATATTTGCTTCAATAGAAGCCCATCCCATACGTTCACTTTGAACTCAATTATCTCGGTTCTTATGAGAGGTATCAAAAGTCTATCAATTAATAAAATACTGGCGATATTTTGACTAACATTTTACAAATTCACAAATTCTTGTTATCTCTTACAGAATTGAGATAATTGAGCTCAAAGTGCATAGAGAGGTCGTTTATCTGTGTTTACGGTCTACGATCTGAGTCAGATCATCATCTGACTATGAGTAATTTTATTAAGCATGACTAGTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>428 219 165 110 73 5</canonical_bands>
                <polymorphic_bands>428 292 165 110 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTCAAGGAAGTGTTGAAATA</pcr_primer_p1>
		<pcr_primer_p2>TTCCCTGTTTCAAATAGTTTATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAATTCAAGGAAGTGTTGAAATAGAACATTTTGATTCACAGTAAACATTCTCTGAAACTTCAACAATCCAGAACTTCTGAATCGATTTTGAGGTCCGCAAAAAATCGCCTTCCGCGTTTTCAAATTTAAAAATACAGTTTTTCACAAAGCTGTCTCGAATTTCTTCATTAAAATGACTGCTAAATTAGTAATTTTGGGATCAGCATAGTTATGTTTTTTTGACAGTCATAAACTATTTGAAACAGGGAA</canonical_amplicon>
		<polymorphic_amplicon>GAATTCAAGGAAGTGTTGAAATAGAACATTTTGATTCACAGTAAACATTCTCTGAAACTTCAACAATCCAGAACTTCTGAATCRATTTTGAGGTCCGCAAAAAATCGCCTTCCGCGTTTTCAAATTTAAAAATACAGTTTTTCACAAAGCTGTCTCGAATTTCTTCATTAAAATGACTGCTAAATTAGTAATTTTGGGATCAGCATAGTTATGTTTTTTTGACAGTCATAAACTATTTGAAACAGGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9305</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>110812</contig_pos>
        <strand>+</strand>
        <context>TTTTGAGGTC[C/T]GCAAAAAATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATTCTCTGAAACTTCAACAATCCAGAACTTCTGAATCGATTTTGAGGTC</left_flank>
        <right_flank>GCAAAAAATCGCCTTCCGCGTTTTCAAATTTAAAAATACAGTTTTTCACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACGAAAAAAAGGGTGTTACAAATTAAACATAAAAAAGGTAGTCAGTGTTATTTGATTAGAGATACCAAGTACTAGAGAGAACTACACGAAAAGAACAAGAAGAAGAAGAAGAAGAAGGAAAAGGACAGTGTGGGAAAGCAGAGGGAATGATCGAAAAATAAACAGAAAATCATGGGGGGACGACGAACAGAATAAAGAGTGACGAGAGAATGGGAATAGAGAAAATAGAACGAGATGCACTAATACTATTATGGTCAGTGTCGAGTCGACGGCGGGGGGATGAGCTCACTGTGTCTGTGTTACAACAAAATAACACAATTACGAAATGTATTGGAAGGTTTTGAACGTCTAGAAGTAGCTTGATCAATAGCTAAGTGGGTATTGAGACATTATTATTTTTTTAGAATTCAAGGAAGTGTTGAAATAGAACATTTTGATTCACAGTAAACATTCTCTGAAACTTCAACAATCCAGAACTTCTGAATCGATTTTGAGGTCCGCAAAAAATCGCCTTCCGCGTTTTCAAATTTAAAAATACAGTTTTTCACAAAGCTGTCTCGAATTTCTTCATTAAAATGACTGCTAAATTAGTAATTTTGGGATCAGCATAGTTATGTTTTTTTGACAGTCATAAACTATTTGAAACAGGGAAATCATAACTTAAACGTAATTTGGTAACGTCAGAACTTTGAAAAGACATTTCATAAAACTACCATATTTGCTTCAATAGAAGCCCATCCCATACGTTCACTTTGAACTCAATTATCTCGGTTCTTATGAGAGGTATCAAAAGTCTATCAATTAATAAAATACTGGCGATATTTTGACTAACATTTTACAAATTCACAAATTCTTGTTATCTCTTACAGAATTGAGATAATTGAGCTCAAAGTGCATAGAGAGGTCGTTTATCTGTGTTTACGGTCTACGATCTGAGTCAGATCATCATCTGACTATGAGTAATTTTATTAAGCATGACTAGTTTTTTAGAATTCAAAC</canonical>
            <polymorphic>AACGAAAAAAAGGGTGTTACAAATTAAACATAAAAAAGGTAGTCAGTGTTATTTGATTAGAGATACCAAGTACTAGAGAGAACTACACGAAAAGAACAAGAAGAAGAAGAAGAAGAAGGAAAAGGACAGTGTGGGAAAGCAGAGGGAATGATCGAAAAATAAACAGAAAATCATGGGGGGACGACGAACAGAATAAAGAGTGACGAGAGAATGGGAATAGAGAAAATAGAACGAGATGCACTAATACTATTATGGTCAGTGTCGAGTCGACGGCGGGGGGATGAGCTCACTGTGTCTGTGTTACAACAAAATAACACAATTACGAAATGTATTGGAAGGTTTTGAACGTCTAGAAGTAGCTTGATCAATAGCTAAGTGGGTATTGAGACATTATTATTTTTTTAGAATTCAAGGAAGTGTTGAAATAGAACATTTTGATTCACAGTAAACATTCTCTGAAACTTCAACAATCCAGAACTTCTGAATCGATTTTGAGGTCYGCAAAAAATCGCCTTCCGCGTTTTCAAATTTAAAAATACAGTTTTTCACAAAGCTGTCTCGAATTTCTTCATTAAAATGACTGCTAAATTAGTAATTTTGGGATCAGCATAGTTATGTTTTTTTGACAGTCATAAACTATTTGAAACAGGGAAATCATAACTTAAACGTAATTTGGTAACGTCAGAACTTTGAAAAGACATTTCATAAAACTACCATATTTGCTTCAATAGAAGCCCATCCCATACGTTCACTTTGAACTCAATTATCTCGGTTCTTATGAGAGGTATCAAAAGTCTATCAATTAATAAAATACTGGCGATATTTTGACTAACATTTTACAAATTCACAAATTCTTGTTATCTCTTACAGAATTGAGATAATTGAGCTCAAAGTGCATAGAGAGGTCGTTTATCTGTGTTTACGGTCTACGATCTGAGTCAGATCATCATCTGACTATGAGTAATTTTATTAAGCATGACTAGTTTTTTAGAATTCAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>484 272 227 17</canonical_bands>
                <polymorphic_bands>484 272 244</polymorphic_bands>
            </assay>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTCAAGGAAGTGTTGAAATA</pcr_primer_p1>
		<pcr_primer_p2>TTCCCTGTTTCAAATAGTTTATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAATTCAAGGAAGTGTTGAAATAGAACATTTTGATTCACAGTAAACATTCTCTGAAACTTCAACAATCCAGAACTTCTGAATCGATTTTGAGGTCCGCAAAAAATCGCCTTCCGCGTTTTCAAATTTAAAAATACAGTTTTTCACAAAGCTGTCTCGAATTTCTTCATTAAAATGACTGCTAAATTAGTAATTTTGGGATCAGCATAGTTATGTTTTTTTGACAGTCATAAACTATTTGAAACAGGGAA</canonical_amplicon>
		<polymorphic_amplicon>GAATTCAAGGAAGTGTTGAAATAGAACATTTTGATTCACAGTAAACATTCTCTGAAACTTCAACAATCCAGAACTTCTGAATCGATTTTGAGGTCYGCAAAAAATCGCCTTCCGCGTTTTCAAATTTAAAAATACAGTTTTTCACAAAGCTGTCTCGAATTTCTTCATTAAAATGACTGCTAAATTAGTAATTTTGGGATCAGCATAGTTATGTTTTTTTGACAGTCATAAACTATTTGAAACAGGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9306</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>110901</contig_pos>
        <strand>+</strand>
        <context>GACTGCTAAA[C/T]TAGTAATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGTTTTTCACAAAGCTGTCTCGAATTTCTTCATTAAAATGACTGCTAAA</left_flank>
        <right_flank>TAGTAATTTTGGGATCAGCATAGTTATGTTTTTTTGACAGTCATAAACTA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAGAACAAGAAGAAGAAGAAGAAGAAGGAAAAGGACAGTGTGGGAAAGCAGAGGGAATGATCGAAAAATAAACAGAAAATCATGGGGGGACGACGAACAGAATAAAGAGTGACGAGAGAATGGGAATAGAGAAAATAGAACGAGATGCACTAATACTATTATGGTCAGTGTCGAGTCGACGGCGGGGGGATGAGCTCACTGTGTCTGTGTTACAACAAAATAACACAATTACGAAATGTATTGGAAGGTTTTGAACGTCTAGAAGTAGCTTGATCAATAGCTAAGTGGGTATTGAGACATTATTATTTTTTTAGAATTCAAGGAAGTGTTGAAATAGAACATTTTGATTCACAGTAAACATTCTCTGAAACTTCAACAATCCAGAACTTCTGAATCGATTTTGAGGTCCGCAAAAAATCGCCTTCCGCGTTTTCAAATTTAAAAATACAGTTTTTCACAAAGCTGTCTCGAATTTCTTCATTAAAATGACTGCTAAATTAGTAATTTTGGGATCAGCATAGTTATGTTTTTTTGACAGTCATAAACTATTTGAAACAGGGAAATCATAACTTAAACGTAATTTGGTAACGTCAGAACTTTGAAAAGACATTTCATAAAACTACCATATTTGCTTCAATAGAAGCCCATCCCATACGTTCACTTTGAACTCAATTATCTCGGTTCTTATGAGAGGTATCAAAAGTCTATCAATTAATAAAATACTGGCGATATTTTGACTAACATTTTACAAATTCACAAATTCTTGTTATCTCTTACAGAATTGAGATAATTGAGCTCAAAGTGCATAGAGAGGTCGTTTATCTGTGTTTACGGTCTACGATCTGAGTCAGATCATCATCTGACTATGAGTAATTTTATTAAGCATGACTAGTTTTTTAGAATTCAAACTGGGGTTTTGAAACAGGAAATTTTGTTTAAAATCGACCTTTCCTAATTTAAAAAATTTCAGGTCCGCACAAAGCTGTCTTTAAATGCAG</canonical>
            <polymorphic>AAAAGAACAAGAAGAAGAAGAAGAAGAAGGAAAAGGACAGTGTGGGAAAGCAGAGGGAATGATCGAAAAATAAACAGAAAATCATGGGGGGACGACGAACAGAATAAAGAGTGACGAGAGAATGGGAATAGAGAAAATAGAACGAGATGCACTAATACTATTATGGTCAGTGTCGAGTCGACGGCGGGGGGATGAGCTCACTGTGTCTGTGTTACAACAAAATAACACAATTACGAAATGTATTGGAAGGTTTTGAACGTCTAGAAGTAGCTTGATCAATAGCTAAGTGGGTATTGAGACATTATTATTTTTTTAGAATTCAAGGAAGTGTTGAAATAGAACATTTTGATTCACAGTAAACATTCTCTGAAACTTCAACAATCCAGAACTTCTGAATCGATTTTGAGGTCCGCAAAAAATCGCCTTCCGCGTTTTCAAATTTAAAAATACAGTTTTTCACAAAGCTGTCTCGAATTTCTTCATTAAAATGACTGCTAAAYTAGTAATTTTGGGATCAGCATAGTTATGTTTTTTTGACAGTCATAAACTATTTGAAACAGGGAAATCATAACTTAAACGTAATTTGGTAACGTCAGAACTTTGAAAAGACATTTCATAAAACTACCATATTTGCTTCAATAGAAGCCCATCCCATACGTTCACTTTGAACTCAATTATCTCGGTTCTTATGAGAGGTATCAAAAGTCTATCAATTAATAAAATACTGGCGATATTTTGACTAACATTTTACAAATTCACAAATTCTTGTTATCTCTTACAGAATTGAGATAATTGAGCTCAAAGTGCATAGAGAGGTCGTTTATCTGTGTTTACGGTCTACGATCTGAGTCAGATCATCATCTGACTATGAGTAATTTTATTAAGCATGACTAGTTTTTTAGAATTCAAACTGGGGTTTTGAAACAGGAAATTTTGTTTAAAATCGACCTTTCCTAATTTAAAAAATTTCAGGTCCGCACAAAGCTGTCTTTAAATGCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>228 121 92 88 83 76 41 39 36 35 29 27 26 25 21 9 9 8 7</canonical_bands>
                <polymorphic_bands>228 121 92 88 83 76 41 39 36 35 32 29 27 26 21 9 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTCAAGGAAGTGTTGAAATA</pcr_primer_p1>
		<pcr_primer_p2>TTCCCTGTTTCAAATAGTTTATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAATTCAAGGAAGTGTTGAAATAGAACATTTTGATTCACAGTAAACATTCTCTGAAACTTCAACAATCCAGAACTTCTGAATCGATTTTGAGGTCCGCAAAAAATCGCCTTCCGCGTTTTCAAATTTAAAAATACAGTTTTTCACAAAGCTGTCTCGAATTTCTTCATTAAAATGACTGCTAAATTAGTAATTTTGGGATCAGCATAGTTATGTTTTTTTGACAGTCATAAACTATTTGAAACAGGGAA</canonical_amplicon>
		<polymorphic_amplicon>GAATTCAAGGAAGTGTTGAAATAGAACATTTTGATTCACAGTAAACATTCTCTGAAACTTCAACAATCCAGAACTTCTGAATCGATTTTGAGGTCCGCAAAAAATCGCCTTCCGCGTTTTCAAATTTAAAAATACAGTTTTTCACAAAGCTGTCTCGAATTTCTTCATTAAAATGACTGCTAAAYTAGTAATTTTGGGATCAGCATAGTTATGTTTTTTTGACAGTCATAAACTATTTGAAACAGGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9307</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>110914</contig_pos>
        <strand>+</strand>
        <context>GTAATTTTGG[C/G]ATCAGCATAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGCTGTCTCGAATTTCTTCATTAAAATGACTGCTAAATTAGTAATTTTGG</left_flank>
        <right_flank>ATCAGCATAGTTATGTTTTTTTGACAGTCATAAACTATTTGAAACAGGGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGAAGAAGAAGAAGGAAAAGGACAGTGTGGGAAAGCAGAGGGAATGATCGAAAAATAAACAGAAAATCATGGGGGGACGACGAACAGAATAAAGAGTGACGAGAGAATGGGAATAGAGAAAATAGAACGAGATGCACTAATACTATTATGGTCAGTGTCGAGTCGACGGCGGGGGGATGAGCTCACTGTGTCTGTGTTACAACAAAATAACACAATTACGAAATGTATTGGAAGGTTTTGAACGTCTAGAAGTAGCTTGATCAATAGCTAAGTGGGTATTGAGACATTATTATTTTTTTAGAATTCAAGGAAGTGTTGAAATAGAACATTTTGATTCACAGTAAACATTCTCTGAAACTTCAACAATCCAGAACTTCTGAATCGATTTTGAGGTCCGCAAAAAATCGCCTTCCGCGTTTTCAAATTTAAAAATACAGTTTTTCACAAAGCTGTCTCGAATTTCTTCATTAAAATGACTGCTAAATTAGTAATTTTGGGATCAGCATAGTTATGTTTTTTTGACAGTCATAAACTATTTGAAACAGGGAAATCATAACTTAAACGTAATTTGGTAACGTCAGAACTTTGAAAAGACATTTCATAAAACTACCATATTTGCTTCAATAGAAGCCCATCCCATACGTTCACTTTGAACTCAATTATCTCGGTTCTTATGAGAGGTATCAAAAGTCTATCAATTAATAAAATACTGGCGATATTTTGACTAACATTTTACAAATTCACAAATTCTTGTTATCTCTTACAGAATTGAGATAATTGAGCTCAAAGTGCATAGAGAGGTCGTTTATCTGTGTTTACGGTCTACGATCTGAGTCAGATCATCATCTGACTATGAGTAATTTTATTAAGCATGACTAGTTTTTTAGAATTCAAACTGGGGTTTTGAAACAGGAAATTTTGTTTAAAATCGACCTTTCCTAATTTAAAAAATTTCAGGTCCGCACAAAGCTGTCTTTAAATGCAGATAAGTTCAATTG</canonical>
            <polymorphic>GAAGAAGAAGAAGAAGGAAAAGGACAGTGTGGGAAAGCAGAGGGAATGATCGAAAAATAAACAGAAAATCATGGGGGGACGACGAACAGAATAAAGAGTGACGAGAGAATGGGAATAGAGAAAATAGAACGAGATGCACTAATACTATTATGGTCAGTGTCGAGTCGACGGCGGGGGGATGAGCTCACTGTGTCTGTGTTACAACAAAATAACACAATTACGAAATGTATTGGAAGGTTTTGAACGTCTAGAAGTAGCTTGATCAATAGCTAAGTGGGTATTGAGACATTATTATTTTTTTAGAATTCAAGGAAGTGTTGAAATAGAACATTTTGATTCACAGTAAACATTCTCTGAAACTTCAACAATCCAGAACTTCTGAATCGATTTTGAGGTCCGCAAAAAATCGCCTTCCGCGTTTTCAAATTTAAAAATACAGTTTTTCACAAAGCTGTCTCGAATTTCTTCATTAAAATGACTGCTAAATTAGTAATTTTGGSATCAGCATAGTTATGTTTTTTTGACAGTCATAAACTATTTGAAACAGGGAAATCATAACTTAAACGTAATTTGGTAACGTCAGAACTTTGAAAAGACATTTCATAAAACTACCATATTTGCTTCAATAGAAGCCCATCCCATACGTTCACTTTGAACTCAATTATCTCGGTTCTTATGAGAGGTATCAAAAGTCTATCAATTAATAAAATACTGGCGATATTTTGACTAACATTTTACAAATTCACAAATTCTTGTTATCTCTTACAGAATTGAGATAATTGAGCTCAAAGTGCATAGAGAGGTCGTTTATCTGTGTTTACGGTCTACGATCTGAGTCAGATCATCATCTGACTATGAGTAATTTTATTAAGCATGACTAGTTTTTTAGAATTCAAACTGGGGTTTTGAAACAGGAAATTTTGTTTAAAATCGACCTTTCCTAATTTAAAAAATTTCAGGTCCGCACAAAGCTGTCTTTAAATGCAGATAAGTTCAATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>329 239 213 161 47 11</canonical_bands>
                <polymorphic_bands>568 213 161 47 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGATTCACAGTAAACATTCTCT</pcr_primer_p1>
		<pcr_primer_p2>GACGTTACCAAATTACGTTTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGATTCACAGTAAACATTCTCTGAAACTTCAACAATCCAGAACTTCTGAATCGATTTTGAGGTCCGCAAAAAATCGCCTTCCGCGTTTTCAAATTTAAAAATACAGTTTTTCACAAAGCTGTCTCGAATTTCTTCATTAAAATGACTGCTAAATTAGTAATTTTGGGATCAGCATAGTTATGTTTTTTTGACAGTCATAAACTATTTGAAACAGGGAAATCATAACTTAAACGTAATTTGGTAACGTC</canonical_amplicon>
		<polymorphic_amplicon>TTTGATTCACAGTAAACATTCTCTGAAACTTCAACAATCCAGAACTTCTGAATCGATTTTGAGGTCCGCAAAAAATCGCCTTCCGCGTTTTCAAATTTAAAAATACAGTTTTTCACAAAGCTGTCTCGAATTTCTTCATTAAAATGACTGCTAAATTAGTAATTTTGGSATCAGCATAGTTATGTTTTTTTGACAGTCATAAACTATTTGAAACAGGGAAATCATAACTTAAACGTAATTTGGTAACGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9308</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>113434</contig_pos>
        <strand>+</strand>
        <context>AGTGGTGTTA[A/G]AGCAAAATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATTGATGGATTGGAGGACTGATGTGTATTGGTTCACAGAGTGGTGTTA</left_flank>
        <right_flank>AGCAAAATTGAGATATGAGATATGGGAGTTTGGAAAATGTGGGTGGCAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTAGATTCAACACATTCCAGAAACTTGATAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGGCCGCTGAGGAACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGGGAAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAACGGAACGGAAGAAATGAGGAAGAAGAAGATGGATGAGGTGCACCAAGAAGTGATTAGGATGATGTACAGAAAACTTATTTCTTTGATTGATGGATTGGAGGACTGATGTGTATTGGTTCACAGAGTGGTGTTAAAGCAAAATTGAGATATGAGATATGGGAGTTTGGAAAATGTGGGTGGCAAATTTTTTAGTAGTTCAGATTGCAAATCTACCGTATTTGCTTTTGTAGAGCATACCATATAAGGACATTTTGAGCTCAATTCACCAATATTTTATCAGTTGATAGAGTTTTGATATTTTCTGAAGGAACCGAAATAATTGATCTCAAAGTTGACGGTCAGGGAGCCCTTCTATTACATGTTAGGCTTCTATTCGAGAAAATAGGTACATCTAACAAAATTAAAAACGTTTCAGACCACTCGAATGAGTCCATTCTTCAGAGTTTAAAAGTATTCTATCTTCACAAAATGTGGTTTTTTGTCTGGTTCATAAAATTAAACGAAGTTCGTGATGTCGTTAAATCGAAATTCTGGAAAAAAAAATTAAAAAAGGAGTTTTTACAGTTTTCGAAGCTATTGTCGAATTTAAAAAAAAAACTGGGACCTGAGAATTTGAAAATCTTCGCTTTTTTTA</canonical>
            <polymorphic>TTTCTAGATTCAACACATTCCAGAAACTTGATAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGGCCGCTGAGGAACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGGGAAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAACGGAACGGAAGAAATGAGGAAGAAGAAGATGGATGAGGTGCACCAAGAAGTGATTAGGATGATGTACAGAAAACTTATTTCTTTGATTGATGGATTGGAGGACTGATGTGTATTGGTTCACAGAGTGGTGTTARAGCAAAATTGAGATATGAGATATGGGAGTTTGGAAAATGTGGGTGGCAAATTTTTTAGTAGTTCAGATTGCAAATCTACCGTATTTGCTTTTGTAGAGCATACCATATAAGGACATTTTGAGCTCAATTCACCAATATTTTATCAGTTGATAGAGTTTTGATATTTTCTGAAGGAACCGAAATAATTGATCTCAAAGTTGACGGTCAGGGAGCCCTTCTATTACATGTTAGGCTTCTATTCGAGAAAATAGGTACATCTAACAAAATTAAAAACGTTTCAGACCACTCGAATGAGTCCATTCTTCAGAGTTTAAAAGTATTCTATCTTCACAAAATGTGGTTTTTTGTCTGGTTCATAAAATTAAACGAAGTTCGTGATGTCGTTAAATCGAAATTCTGGAAAAAAAAATTAAAAAAGGAGTTTTTACAGTTTTCGAAGCTATTGTCGAATTTAAAAAAAAAACTGGGACCTGAGAATTTGAAAATCTTCGCTTTTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>427 270 54 51 48 44 42 26 22 16</canonical_bands>
                <polymorphic_bands>697 54 51 48 44 42 26 22 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGAAATGAGGAAGAAGAAGAT</pcr_primer_p1>
		<pcr_primer_p2>CAAAATGTCCTTATATGGTATGC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAGAAATGAGGAAGAAGAAGATGGATGAGGTGCACCAAGAAGTGATTAGGATGATGTACAGAAAACTTATTTCTTTGATTGATGGATTGGAGGACTGATGTGTATTGGTTCACAGAGTGGTGTTAAAGCAAAATTGAGATATGAGATATGGGAGTTTGGAAAATGTGGGTGGCAAATTTTTTAGTAGTTCAGATTGCAAATCTACCGTATTTGCTTTTGTAGAGCATACCATATAAGGACATTTTG</canonical_amplicon>
		<polymorphic_amplicon>GAAGAAATGAGGAAGAAGAAGATGGATGAGGTGCACCAAGAAGTGATTAGGATGATGTACAGAAAACTTATTTCTTTGATTGATGGATTGGAGGACTGATGTGTATTGGTTCACAGAGTGGTGTTARAGCAAAATTGAGATATGAGATATGGGAGTTTGGAAAATGTGGGTGGCAAATTTTTTAGTAGTTCAGATTGCAAATCTACCGTATTTGCTTTTGTAGAGCATACCATATAAGGACATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9309</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>113258</contig_pos>
        <strand>+</strand>
        <context>TTGATTTCGG[A/G]AAGTGAGGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGG</left_flank>
        <right_flank>AAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAACGGAACGG</right_flank>
        <qual_score>146</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATCTCGGTTTCTATGACATATATCAGACTTTTTTGATACCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGAAAGCATAGAGTGATCTTCTATTAAAGTTTATACGGTACATTTTGTTTTTTCTAGAGCCCAACCGCCGAGGGTCCAATTCGGTCGGACGCAAATCTTACATTTCTAGATTCAACACATTCCAGAAACTTGATAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGGCCGCTGAGGAACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGGGAAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAACGGAACGGAAGAAATGAGGAAGAAGAAGATGGATGAGGTGCACCAAGAAGTGATTAGGATGATGTACAGAAAACTTATTTCTTTGATTGATGGATTGGAGGACTGATGTGTATTGGTTCACAGAGTGGTGTTAAAGCAAAATTGAGATATGAGATATGGGAGTTTGGAAAATGTGGGTGGCAAATTTTTTAGTAGTTCAGATTGCAAATCTACCGTATTTGCTTTTGTAGAGCATACCATATAAGGACATTTTGAGCTCAATTCACCAATATTTTATCAGTTGATAGAGTTTTGATATTTTCTGAAGGAACCGAAATAATTGATCTCAAAGTTGACGGTCAGGGAGCCCTTCTATTACATGTTAGGCTTCTATTCGAGAAAATAGGTACATCTAACAAAATTAAAAACGTTTCAGACCACTCGAATGAGTCCATTCTTCAGAGTTTAAAAGTATTCTA</canonical>
            <polymorphic>TTATCTCGGTTTCTATGACATATATCAGACTTTTTTGATACCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGAAAGCATAGAGTGATCTTCTATTAAAGTTTATACGGTACATTTTGTTTTTTCTAGAGCCCAACCGCCGAGGGTCCAATTCGGTCGGACGCAAATCTTACATTTCTAGATTCAACACATTCCAGAAACTTGATAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGGCCGCTGAGGAACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGGRAAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAACGGAACGGAAGAAATGAGGAAGAAGAAGATGGATGAGGTGCACCAAGAAGTGATTAGGATGATGTACAGAAAACTTATTTCTTTGATTGATGGATTGGAGGACTGATGTGTATTGGTTCACAGAGTGGTGTTAAAGCAAAATTGAGATATGAGATATGGGAGTTTGGAAAATGTGGGTGGCAAATTTTTTAGTAGTTCAGATTGCAAATCTACCGTATTTGCTTTTGTAGAGCATACCATATAAGGACATTTTGAGCTCAATTCACCAATATTTTATCAGTTGATAGAGTTTTGATATTTTCTGAAGGAACCGAAATAATTGATCTCAAAGTTGACGGTCAGGGAGCCCTTCTATTACATGTTAGGCTTCTATTCGAGAAAATAGGTACATCTAACAAAATTAAAAACGTTTCAGACCACTCGAATGAGTCCATTCTTCAGAGTTTAAAAGTATTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>420 198 128 86 83 52 17 16</canonical_bands>
                <polymorphic_bands>618 128 86 83 52 17 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTTCTCACTTTGTCGTGTG</pcr_primer_p1>
		<pcr_primer_p2>CAATCCATCAATCAAAGAAATAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGGCCGCTGAGGAACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGGGAAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAACGGAACGGAAGAAATGAGGAAGAAGAAGATGGATGAGGTGCACCAAGAAGTGATTAGGATGATGTACAGAAAACTTATTTCTTTGATTGATGGATTG</canonical_amplicon>
		<polymorphic_amplicon>CTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGGCCGCTGAGGAACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGGRAAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAACGGAACGGAAGAAATGAGGAAGAAGAAGATGGATGAGGTGCACCAAGAAGTGATTAGGATGATGTACAGAAAACTTATTTCTTTGATTGATGGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9310</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>113148</contig_pos>
        <strand>+</strand>
        <context>TAACATGTGT[C/T]CTCTTCTCAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGT</left_flank>
        <right_flank>CTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGG</right_flank>
        <qual_score>149</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTTATTTTTTTTGTATTTTTAAGATAACTTCCAAAGTAGAGAGTAGTACCAAATATAACTACACACAACACTCTAATATTATGCCACCCGCTTGCACGTTGAGCTCAATTATCTCGGTTTCTATGACATATATCAGACTTTTTTGATACCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGAAAGCATAGAGTGATCTTCTATTAAAGTTTATACGGTACATTTTGTTTTTTCTAGAGCCCAACCGCCGAGGGTCCAATTCGGTCGGACGCAAATCTTACATTTCTAGATTCAACACATTCCAGAAACTTGATAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGGCCGCTGAGGAACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGGGAAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAACGGAACGGAAGAAATGAGGAAGAAGAAGATGGATGAGGTGCACCAAGAAGTGATTAGGATGATGTACAGAAAACTTATTTCTTTGATTGATGGATTGGAGGACTGATGTGTATTGGTTCACAGAGTGGTGTTAAAGCAAAATTGAGATATGAGATATGGGAGTTTGGAAAATGTGGGTGGCAAATTTTTTAGTAGTTCAGATTGCAAATCTACCGTATTTGCTTTTGTAGAGCATACCATATAAGGACATTTTGAGCTCAATTCACCAATATTTTATCAGTTGATAGAGTTTTGATATTTTCTGAAGGAACCGAAATAATTGATCTCAAAGTTGACGGTCAGGGAGCC</canonical>
            <polymorphic>ATGTTATTTTTTTTGTATTTTTAAGATAACTTCCAAAGTAGAGAGTAGTACCAAATATAACTACACACAACACTCTAATATTATGCCACCCGCTTGCACGTTGAGCTCAATTATCTCGGTTTCTATGACATATATCAGACTTTTTTGATACCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGAAAGCATAGAGTGATCTTCTATTAAAGTTTATACGGTACATTTTGTTTTTTCTAGAGCCCAACCGCCGAGGGTCCAATTCGGTCGGACGCAAATCTTACATTTCTAGATTCAACACATTCCAGAAACTTGATAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTYCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGGCCGCTGAGGAACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGGGAAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAACGGAACGGAAGAAATGAGGAAGAAGAAGATGGATGAGGTGCACCAAGAAGTGATTAGGATGATGTACAGAAAACTTATTTCTTTGATTGATGGATTGGAGGACTGATGTGTATTGGTTCACAGAGTGGTGTTAAAGCAAAATTGAGATATGAGATATGGGAGTTTGGAAAATGTGGGTGGCAAATTTTTTAGTAGTTCAGATTGCAAATCTACCGTATTTGCTTTTGTAGAGCATACCATATAAGGACATTTTGAGCTCAATTCACCAATATTTTATCAGTTGATAGAGTTTTGATATTTTCTGAAGGAACCGAAATAATTGATCTCAAAGTTGACGGTCAGGGAGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCTCGAAACCAGATGTGT</pcr_primer_p1>
		<pcr_primer_p2>GTTCTATATTTCCCCATTTCCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGGCCGCTGAGGAACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGGGAAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAAC</canonical_amplicon>
		<polymorphic_amplicon>AAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTYCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGGCCGCTGAGGAACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGGGAAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9311</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>113106</contig_pos>
        <strand></strand>
        <context>caccycctAA[A/G]TCCTAAACAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAA</left_flank>
        <right_flank>TCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAAACTTTCAAAGAGTTGTAATAAAAACTATGAAACAGTAATGTTATTTTTTTTGTATTTTTAAGATAACTTCCAAAGTAGAGAGTAGTACCAAATATAACTACACACAACACTCTAATATTATGCCACCCGCTTGCACGTTGAGCTCAATTATCTCGGTTTCTATGACATATATCAGACTTTTTTGATACCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGAAAGCATAGAGTGATCTTCTATTAAAGTTTATACGGTACATTTTGTTTTTTCTAGAGCCCAACCGCCGAGGGTCCAATTCGGTCGGACGCAAATCTTACATTTCTAGATTCAACACATTCCAGAAACTTGATAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGGCCGCTGAGGAACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGGGAAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAACGGAACGGAAGAAATGAGGAAGAAGAAGATGGATGAGGTGCACCAAGAAGTGATTAGGATGATGTACAGAAAACTTATTTCTTTGATTGATGGATTGGAGGACTGATGTGTATTGGTTCACAGAGTGGTGTTAAAGCAAAATTGAGATATGAGATATGGGAGTTTGGAAAATGTGGGTGGCAAATTTTTTAGTAGTTCAGATTGCAAATCTACCGTATTTGCTTTTGTAGAGCATACCATATAAGGACATTTTGAGCTCAATTCACCAATATTTTATCAGTTGATAGAGTTTTGATATTTTCTGAA</canonical>
            <polymorphic>ATCAAACTTTCAAAGAGTTGTAATAAAAACTATGAAACAGTAATGTTATTTTTTTTGTATTTTTAAGATAACTTCCAAAGTAGAGAGTAGTACCAAATATAACTACACACAACACTCTAATATTATGCCACCCGCTTGCACGTTGAGCTCAATTATCTCGGTTTCTATGACATATATCAGACTTTTTTGATACCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGAAAGCATAGAGTGATCTTCTATTAAAGTTTATACGGTACATTTTGTTTTTTCTAGAGCCCAACCGCCGAGGGTCCAATTCGGTCGGACGCAAATCTTACATTTCTAGATTCAACACATTCCAGAAACTTGATAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAARTCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGGCCGCTGAGGAACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGGGAAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAACGGAACGGAAGAAATGAGGAAGAAGAAGATGGATGAGGTGCACCAAGAAGTGATTAGGATGATGTACAGAAAACTTATTTCTTTGATTGATGGATTGGAGGACTGATGTGTATTGGTTCACAGAGTGGTGTTAAAGCAAAATTGAGATATGAGATATGGGAGTTTGGAAAATGTGGGTGGCAAATTTTTTAGTAGTTCAGATTGCAAATCTACCGTATTTGCTTTTGTAGAGCATACCATATAAGGACATTTTGAGCTCAATTCACCAATATTTTATCAGTTGATAGAGTTTTGATATTTTCTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCTCGAAACCAGATGTGT</pcr_primer_p1>
		<pcr_primer_p2>GTTCTATATTTCCCCATTTCCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGGCCGCTGAGGAACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGGGAAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAAC</canonical_amplicon>
		<polymorphic_amplicon>AAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAARTCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGGCCGCTGAGGAACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGGGAAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9316</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>113027</contig_pos>
        <strand>+</strand>
        <context>GCTTCCCACC[C/T]GCCCTCGGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACC</left_flank>
        <right_flank>GCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCTGTCTGACAATCTTTTCGGTTTGAAGAGGAATGAGAAGAACGTTTGAATCTGACATAAAGAACAAATCATCATTATCAAACTTTCAAAGAGTTGTAATAAAAACTATGAAACAGTAATGTTATTTTTTTTGTATTTTTAAGATAACTTCCAAAGTAGAGAGTAGTACCAAATATAACTACACACAACACTCTAATATTATGCCACCCGCTTGCACGTTGAGCTCAATTATCTCGGTTTCTATGACATATATCAGACTTTTTTGATACCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGAAAGCATAGAGTGATCTTCTATTAAAGTTTATACGGTACATTTTGTTTTTTCTAGAGCCCAACCGCCGAGGGTCCAATTCGGTCGGACGCAAATCTTACATTTCTAGATTCAACACATTCCAGAAACTTGATAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGGCCGCTGAGGAACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGGGAAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAACGGAACGGAAGAAATGAGGAAGAAGAAGATGGATGAGGTGCACCAAGAAGTGATTAGGATGATGTACAGAAAACTTATTTCTTTGATTGATGGATTGGAGGACTGATGTGTATTGGTTCACAGAGTGGTGTTAAAGCAAAATTGAGATATGAGATATGGGAGTTTGGAAAATGTGGGTGGCAAATTTTTTAGTAGTTCAGATTGCAAATCTACCGTATTTGCTTTTG</canonical>
            <polymorphic>TTTTCTGTCTGACAATCTTTTCGGTTTGAAGAGGAATGAGAAGAACGTTTGAATCTGACATAAAGAACAAATCATCATTATCAAACTTTCAAAGAGTTGTAATAAAAACTATGAAACAGTAATGTTATTTTTTTTGTATTTTTAAGATAACTTCCAAAGTAGAGAGTAGTACCAAATATAACTACACACAACACTCTAATATTATGCCACCCGCTTGCACGTTGAGCTCAATTATCTCGGTTTCTATGACATATATCAGACTTTTTTGATACCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGAAAGCATAGAGTGATCTTCTATTAAAGTTTATACGGTACATTTTGTTTTTTCTAGAGCCCAACCGCCGAGGGTCCAATTCGGTCGGACGCAAATCTTACATTTCTAGATTCAACACATTCCAGAAACTTGATAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACCYGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGGCCGCTGAGGAACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGGGAAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAACGGAACGGAAGAAATGAGGAAGAAGAAGATGGATGAGGTGCACCAAGAAGTGATTAGGATGATGTACAGAAAACTTATTTCTTTGATTGATGGATTGGAGGACTGATGTGTATTGGTTCACAGAGTGGTGTTAAAGCAAAATTGAGATATGAGATATGGGAGTTTGGAAAATGTGGGTGGCAAATTTTTTAGTAGTTCAGATTGCAAATCTACCGTATTTGCTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCAACACATTCCAGAAACTT</pcr_primer_p1>
		<pcr_primer_p2>AACCTCCTCTCACACAGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTCAACACATTCCAGAAACTTGATAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTT</canonical_amplicon>
		<polymorphic_amplicon>ATTCAACACATTCCAGAAACTTGATAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACCYGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9317</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>112998</contig_pos>
        <strand>+</strand>
        <context>TTAAAAAAGC[C/T]GTGCTTTAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACATTCCAGAAACTTGATAGTTTTTTGTCAAATCAGTGTTTAAAAAAGC</left_flank>
        <right_flank>GTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGTTAATATTGCCTGCCATTTCACACTTTTTTCTGTCTGACAATCTTTTCGGTTTGAAGAGGAATGAGAAGAACGTTTGAATCTGACATAAAGAACAAATCATCATTATCAAACTTTCAAAGAGTTGTAATAAAAACTATGAAACAGTAATGTTATTTTTTTTGTATTTTTAAGATAACTTCCAAAGTAGAGAGTAGTACCAAATATAACTACACACAACACTCTAATATTATGCCACCCGCTTGCACGTTGAGCTCAATTATCTCGGTTTCTATGACATATATCAGACTTTTTTGATACCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGAAAGCATAGAGTGATCTTCTATTAAAGTTTATACGGTACATTTTGTTTTTTCTAGAGCCCAACCGCCGAGGGTCCAATTCGGTCGGACGCAAATCTTACATTTCTAGATTCAACACATTCCAGAAACTTGATAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGGCCGCTGAGGAACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGGGAAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAACGGAACGGAAGAAATGAGGAAGAAGAAGATGGATGAGGTGCACCAAGAAGTGATTAGGATGATGTACAGAAAACTTATTTCTTTGATTGATGGATTGGAGGACTGATGTGTATTGGTTCACAGAGTGGTGTTAAAGCAAAATTGAGATATGAGATATGGGAGTTTGGAAAATGTGGGTGGCAAATTTTTTAGTAGTTC</canonical>
            <polymorphic>AGGTTAATATTGCCTGCCATTTCACACTTTTTTCTGTCTGACAATCTTTTCGGTTTGAAGAGGAATGAGAAGAACGTTTGAATCTGACATAAAGAACAAATCATCATTATCAAACTTTCAAAGAGTTGTAATAAAAACTATGAAACAGTAATGTTATTTTTTTTGTATTTTTAAGATAACTTCCAAAGTAGAGAGTAGTACCAAATATAACTACACACAACACTCTAATATTATGCCACCCGCTTGCACGTTGAGCTCAATTATCTCGGTTTCTATGACATATATCAGACTTTTTTGATACCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGAAAGCATAGAGTGATCTTCTATTAAAGTTTATACGGTACATTTTGTTTTTTCTAGAGCCCAACCGCCGAGGGTCCAATTCGGTCGGACGCAAATCTTACATTTCTAGATTCAACACATTCCAGAAACTTGATAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCYGTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGGCCGCTGAGGAACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGGGAAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAACGGAACGGAAGAAATGAGGAAGAAGAAGATGGATGAGGTGCACCAAGAAGTGATTAGGATGATGTACAGAAAACTTATTTCTTTGATTGATGGATTGGAGGACTGATGTGTATTGGTTCACAGAGTGGTGTTAAAGCAAAATTGAGATATGAGATATGGGAGTTTGGAAAATGTGGGTGGCAAATTTTTTAGTAGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>502 255 171 72</canonical_bands>
                <polymorphic_bands>673 255 72</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>300 255 202 105 72 66</canonical_bands>
                <polymorphic_bands>307 300 255 72 66</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCAACACATTCCAGAAACTT</pcr_primer_p1>
		<pcr_primer_p2>AACCTCCTCTCACACAGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTCAACACATTCCAGAAACTTGATAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTT</canonical_amplicon>
		<polymorphic_amplicon>ATTCAACACATTCCAGAAACTTGATAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCYGTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9318</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>112975</contig_pos>
        <strand>+</strand>
        <context>MTAGTTTTTT[G/T]TCAAATCAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATCTTACATTTCTAGATTCAACACATTCCAGAAACTTGATAGTTTTTT</left_flank>
        <right_flank>TCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGAAGAAACATTCGGGAGAGGAGGTTAATATTGCCTGCCATTTCACACTTTTTTCTGTCTGACAATCTTTTCGGTTTGAAGAGGAATGAGAAGAACGTTTGAATCTGACATAAAGAACAAATCATCATTATCAAACTTTCAAAGAGTTGTAATAAAAACTATGAAACAGTAATGTTATTTTTTTTGTATTTTTAAGATAACTTCCAAAGTAGAGAGTAGTACCAAATATAACTACACACAACACTCTAATATTATGCCACCCGCTTGCACGTTGAGCTCAATTATCTCGGTTTCTATGACATATATCAGACTTTTTTGATACCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGAAAGCATAGAGTGATCTTCTATTAAAGTTTATACGGTACATTTTGTTTTTTCTAGAGCCCAACCGCCGAGGGTCCAATTCGGTCGGACGCAAATCTTACATTTCTAGATTCAACACATTCCAGAAACTTGATAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGGCCGCTGAGGAACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGGGAAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAACGGAACGGAAGAAATGAGGAAGAAGAAGATGGATGAGGTGCACCAAGAAGTGATTAGGATGATGTACAGAAAACTTATTTCTTTGATTGATGGATTGGAGGACTGATGTGTATTGGTTCACAGAGTGGTGTTAAAGCAAAATTGAGATATGAGATATGGGAGTTTGGAAAATGTG</canonical>
            <polymorphic>GGAGAAGAAACATTCGGGAGAGGAGGTTAATATTGCCTGCCATTTCACACTTTTTTCTGTCTGACAATCTTTTCGGTTTGAAGAGGAATGAGAAGAACGTTTGAATCTGACATAAAGAACAAATCATCATTATCAAACTTTCAAAGAGTTGTAATAAAAACTATGAAACAGTAATGTTATTTTTTTTGTATTTTTAAGATAACTTCCAAAGTAGAGAGTAGTACCAAATATAACTACACACAACACTCTAATATTATGCCACCCGCTTGCACGTTGAGCTCAATTATCTCGGTTTCTATGACATATATCAGACTTTTTTGATACCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGAAAGCATAGAGTGATCTTCTATTAAAGTTTATACGGTACATTTTGTTTTTTCTAGAGCCCAACCGCCGAGGGTCCAATTCGGTCGGACGCAAATCTTACATTTCTAGATTCAACACATTCCAGAAACTTGATAGTTTTTTKTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGGCCGCTGAGGAACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGGGAAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAACGGAACGGAAGAAATGAGGAAGAAGAAGATGGATGAGGTGCACCAAGAAGTGATTAGGATGATGTACAGAAAACTTATTTCTTTGATTGATGGATTGGAGGACTGATGTGTATTGGTTCACAGAGTGGTGTTAAAGCAAAATTGAGATATGAGATATGGGAGTTTGGAAAATGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGACGCAAATCTTACATTTCTA</pcr_primer_p1>
		<pcr_primer_p2>CACACGACAAAGTGAGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGACGCAAATCTTACATTTCTAGATTCAACACATTCCAGAAACTTGATAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTG</canonical_amplicon>
		<polymorphic_amplicon>GGACGCAAATCTTACATTTCTAGATTCAACACATTCCAGAAACTTGATAGTTTTTTKTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9319</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>112965</contig_pos>
        <strand>+</strand>
        <context>CAGAAACTTG[A/C]TAGTTTTTTK</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGTCGGACGCAAATCTTACATTTCTAGATTCAACACATTCCAGAAACTTG</left_flank>
        <right_flank>TAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGAAAAACGGGAGAAGAAACATTCGGGAGAGGAGGTTAATATTGCCTGCCATTTCACACTTTTTTCTGTCTGACAATCTTTTCGGTTTGAAGAGGAATGAGAAGAACGTTTGAATCTGACATAAAGAACAAATCATCATTATCAAACTTTCAAAGAGTTGTAATAAAAACTATGAAACAGTAATGTTATTTTTTTTGTATTTTTAAGATAACTTCCAAAGTAGAGAGTAGTACCAAATATAACTACACACAACACTCTAATATTATGCCACCCGCTTGCACGTTGAGCTCAATTATCTCGGTTTCTATGACATATATCAGACTTTTTTGATACCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGAAAGCATAGAGTGATCTTCTATTAAAGTTTATACGGTACATTTTGTTTTTTCTAGAGCCCAACCGCCGAGGGTCCAATTCGGTCGGACGCAAATCTTACATTTCTAGATTCAACACATTCCAGAAACTTGATAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGGCCGCTGAGGAACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGGGAAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAACGGAACGGAAGAAATGAGGAAGAAGAAGATGGATGAGGTGCACCAAGAAGTGATTAGGATGATGTACAGAAAACTTATTTCTTTGATTGATGGATTGGAGGACTGATGTGTATTGGTTCACAGAGTGGTGTTAAAGCAAAATTGAGATATGAGATATGGGAGTTT</canonical>
            <polymorphic>GGGAAAAACGGGAGAAGAAACATTCGGGAGAGGAGGTTAATATTGCCTGCCATTTCACACTTTTTTCTGTCTGACAATCTTTTCGGTTTGAAGAGGAATGAGAAGAACGTTTGAATCTGACATAAAGAACAAATCATCATTATCAAACTTTCAAAGAGTTGTAATAAAAACTATGAAACAGTAATGTTATTTTTTTTGTATTTTTAAGATAACTTCCAAAGTAGAGAGTAGTACCAAATATAACTACACACAACACTCTAATATTATGCCACCCGCTTGCACGTTGAGCTCAATTATCTCGGTTTCTATGACATATATCAGACTTTTTTGATACCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGAAAGCATAGAGTGATCTTCTATTAAAGTTTATACGGTACATTTTGTTTTTTCTAGAGCCCAACCGCCGAGGGTCCAATTCGGTCGGACGCAAATCTTACATTTCTAGATTCAACACATTCCAGAAACTTGMTAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGGCCGCTGAGGAACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGGGAAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAACGGAACGGAAGAAATGAGGAAGAAGAAGATGGATGAGGTGCACCAAGAAGTGATTAGGATGATGTACAGAAAACTTATTTCTTTGATTGATGGATTGGAGGACTGATGTGTATTGGTTCACAGAGTGGTGTTAAAGCAAAATTGAGATATGAGATATGGGAGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAATATAACTACACACAACACTC</pcr_primer_p1>
		<pcr_primer_p2>ACACATCTGGTTTCGAGATT</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>CCAAATATAACTACACACAACACTCTAATATTATGCCACCCGCTTGCACGTTGAGCTCAATTATCTCGGTTTCTATGACATATATCAGACTTTTTTGATACCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGAAAGCATAGAGTGATCTTCTATTAAAGTTTATACGGTACATTTTGTTTTTTCTAGAGCCCAACCGCCGAGGGTCCAATTCGGTCGGACGCAAATCTTACATTTCTAGATTCAACACATTCCAGAAACTTGATAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGT</canonical_amplicon>
		<polymorphic_amplicon>CCAAATATAACTACACACAACACTCTAATATTATGCCACCCGCTTGCACGTTGAGCTCAATTATCTCGGTTTCTATGACATATATCAGACTTTTTTGATACCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGAAAGCATAGAGTGATCTTCTATTAAAGTTTATACGGTACATTTTGTTTTTTCTAGAGCCCAACCGCCGAGGGTCCAATTCGGTCGGACGCAAATCTTACATTTCTAGATTCAACACATTCCAGAAACTTGMTAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9340</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>113100</contig_pos>
        <strand>+</strand>
        <context>tcctcccacc[C/T]cctAARTCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACC</left_flank>
        <right_flank>CCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCATTATCAAACTTTCAAAGAGTTGTAATAAAAACTATGAAACAGTAATGTTATTTTTTTTGTATTTTTAAGATAACTTCCAAAGTAGAGAGTAGTACCAAATATAACTACACACAACACTCTAATATTATGCCACCCGCTTGCACGTTGAGCTCAATTATCTCGGTTTCTATGACATATATCAGACTTTTTTGATACCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGAAAGCATAGAGTGATCTTCTATTAAAGTTTATACGGTACATTTTGTTTTTTCTAGAGCCCAACCGCCGAGGGTCCAATTCGGTCGGACGCAAATCTTACATTTCTAGATTCAACACATTCCAGAAACTTGATAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGGCCGCTGAGGAACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGGGAAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAACGGAACGGAAGAAATGAGGAAGAAGAAGATGGATGAGGTGCACCAAGAAGTGATTAGGATGATGTACAGAAAACTTATTTCTTTGATTGATGGATTGGAGGACTGATGTGTATTGGTTCACAGAGTGGTGTTAAAGCAAAATTGAGATATGAGATATGGGAGTTTGGAAAATGTGGGTGGCAAATTTTTTAGTAGTTCAGATTGCAAATCTACCGTATTTGCTTTTGTAGAGCATACCATATAAGGACATTTTGAGCTCAATTCACCAATATTTTATCAGTTGATAGAGTTTTGATATTT</canonical>
            <polymorphic>ATCATTATCAAACTTTCAAAGAGTTGTAATAAAAACTATGAAACAGTAATGTTATTTTTTTTGTATTTTTAAGATAACTTCCAAAGTAGAGAGTAGTACCAAATATAACTACACACAACACTCTAATATTATGCCACCCGCTTGCACGTTGAGCTCAATTATCTCGGTTTCTATGACATATATCAGACTTTTTTGATACCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGAAAGCATAGAGTGATCTTCTATTAAAGTTTATACGGTACATTTTGTTTTTTCTAGAGCCCAACCGCCGAGGGTCCAATTCGGTCGGACGCAAATCTTACATTTCTAGATTCAACACATTCCAGAAACTTGATAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCYCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGGCCGCTGAGGAACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGGGAAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAACGGAACGGAAGAAATGAGGAAGAAGAAGATGGATGAGGTGCACCAAGAAGTGATTAGGATGATGTACAGAAAACTTATTTCTTTGATTGATGGATTGGAGGACTGATGTGTATTGGTTCACAGAGTGGTGTTAAAGCAAAATTGAGATATGAGATATGGGAGTTTGGAAAATGTGGGTGGCAAATTTTTTAGTAGTTCAGATTGCAAATCTACCGTATTTGCTTTTGTAGAGCATACCATATAAGGACATTTTGAGCTCAATTCACCAATATTTTATCAGTTGATAGAGTTTTGATATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCAACACATTCCAGAAACTT</pcr_primer_p1>
		<pcr_primer_p2>AACCTCCTCTCACACAGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTCAACACATTCCAGAAACTTGATAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTT</canonical_amplicon>
		<polymorphic_amplicon>ATTCAACACATTCCAGAAACTTGATAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCYCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9348</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>113465</contig_pos>
        <strand>+</strand>
        <context>TATGGGAGTT[C/T]GGAAAATGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTTCACAGAGTGGTGTTAAAGCAAAATTGAGATATGAGATATGGGAGTT</left_flank>
        <right_flank>GGAAAATGTGGGTGGCAAATTTTTTAGTAGTTCAGATTGCAAATCTACCG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGGCCGCTGAGGAACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGGGAAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAACGGAACGGAAGAAATGAGGAAGAAGAAGATGGATGAGGTGCACCAAGAAGTGATTAGGATGATGTACAGAAAACTTATTTCTTTGATTGATGGATTGGAGGACTGATGTGTATTGGTTCACAGAGTGGTGTTAAAGCAAAATTGAGATATGAGATATGGGAGTTTGGAAAATGTGGGTGGCAAATTTTTTAGTAGTTCAGATTGCAAATCTACCGTATTTGCTTTTGTAGAGCATACCATATAAGGACATTTTGAGCTCAATTCACCAATATTTTATCAGTTGATAGAGTTTTGATATTTTCTGAAGGAACCGAAATAATTGATCTCAAAGTTGACGGTCAGGGAGCCCTTCTATTACATGTTAGGCTTCTATTCGAGAAAATAGGTACATCTAACAAAATTAAAAACGTTTCAGACCACTCGAATGAGTCCATTCTTCAGAGTTTAAAAGTATTCTATCTTCACAAAATGTGGTTTTTTGTCTGGTTCATAAAATTAAACGAAGTTCGTGATGTCGTTAAATCGAAATTCTGGAAAAAAAAATTAAAAAAGGAGTTTTTACAGTTTTCGAAGCTATTGTCGAATTTAAAAAAAAAACTGGGACCTGAGAATTTGAAAATCTTCGCTTTTTTTATCTACGAGAGCGCGGCAAAAATGTAATATTT</canonical>
            <polymorphic>TAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGGCCGCTGAGGAACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGGGAAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAACGGAACGGAAGAAATGAGGAAGAAGAAGATGGATGAGGTGCACCAAGAAGTGATTAGGATGATGTACAGAAAACTTATTTCTTTGATTGATGGATTGGAGGACTGATGTGTATTGGTTCACAGAGTGGTGTTAAAGCAAAATTGAGATATGAGATATGGGAGTTYGGAAAATGTGGGTGGCAAATTTTTTAGTAGTTCAGATTGCAAATCTACCGTATTTGCTTTTGTAGAGCATACCATATAAGGACATTTTGAGCTCAATTCACCAATATTTTATCAGTTGATAGAGTTTTGATATTTTCTGAAGGAACCGAAATAATTGATCTCAAAGTTGACGGTCAGGGAGCCCTTCTATTACATGTTAGGCTTCTATTCGAGAAAATAGGTACATCTAACAAAATTAAAAACGTTTCAGACCACTCGAATGAGTCCATTCTTCAGAGTTTAAAAGTATTCTATCTTCACAAAATGTGGTTTTTTGTCTGGTTCATAAAATTAAACGAAGTTCGTGATGTCGTTAAATCGAAATTCTGGAAAAAAAAATTAAAAAAGGAGTTTTTACAGTTTTCGAAGCTATTGTCGAATTTAAAAAAAAAACTGGGACCTGAGAATTTGAAAATCTTCGCTTTTTTTATCTACGAGAGCGCGGCAAAAATGTAATATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGAAATGAGGAAGAAGAAGAT</pcr_primer_p1>
		<pcr_primer_p2>CAAAATGTCCTTATATGGTATGC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAGAAATGAGGAAGAAGAAGATGGATGAGGTGCACCAAGAAGTGATTAGGATGATGTACAGAAAACTTATTTCTTTGATTGATGGATTGGAGGACTGATGTGTATTGGTTCACAGAGTGGTGTTAAAGCAAAATTGAGATATGAGATATGGGAGTTTGGAAAATGTGGGTGGCAAATTTTTTAGTAGTTCAGATTGCAAATCTACCGTATTTGCTTTTGTAGAGCATACCATATAAGGACATTTTG</canonical_amplicon>
		<polymorphic_amplicon>GAAGAAATGAGGAAGAAGAAGATGGATGAGGTGCACCAAGAAGTGATTAGGATGATGTACAGAAAACTTATTTCTTTGATTGATGGATTGGAGGACTGATGTGTATTGGTTCACAGAGTGGTGTTAAAGCAAAATTGAGATATGAGATATGGGAGTTYGGAAAATGTGGGTGGCAAATTTTTTAGTAGTTCAGATTGCAAATCTACCGTATTTGCTTTTGTAGAGCATACCATATAAGGACATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9349</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>113524</contig_pos>
        <strand></strand>
        <context>CGTATTTGCT[T/C]TTGTAGAGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGGGTGGCAAATTTTTTAGTAGTTCAGATTGCAAATCTACCGTATTTGCT</left_flank>
        <right_flank>TTGTAGAGCATACCATATAAGGACATTTTGAGCTCAATTCACCAATATTT</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGGCCGCTGAGGAACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGGGAAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAACGGAACGGAAGAAATGAGGAAGAAGAAGATGGATGAGGTGCACCAAGAAGTGATTAGGATGATGTACAGAAAACTTATTTCTTTGATTGATGGATTGGAGGACTGATGTGTATTGGTTCACAGAGTGGTGTTAAAGCAAAATTGAGATATGAGATATGGGAGTTTGGAAAATGTGGGTGGCAAATTTTTTAGTAGTTCAGATTGCAAATCTACCGTATTTGCTTTTGTAGAGCATACCATATAAGGACATTTTGAGCTCAATTCACCAATATTTTATCAGTTGATAGAGTTTTGATATTTTCTGAAGGAACCGAAATAATTGATCTCAAAGTTGACGGTCAGGGAGCCCTTCTATTACATGTTAGGCTTCTATTCGAGAAAATAGGTACATCTAACAAAATTAAAAACGTTTCAGACCACTCGAATGAGTCCATTCTTCAGAGTTTAAAAGTATTCTATCTTCACAAAATGTGGTTTTTTGTCTGGTTCATAAAATTAAACGAAGTTCGTGATGTCGTTAAATCGAAATTCTGGAAAAAAAAATTAAAAAAGGAGTTTTTACAGTTTTCGAAGCTATTGTCGAATTTAAAAAAAAAACTGGGACCTGAGAATTTGAAAATCTTCGCTTTTTTTATCTACGAGAGCGCGGCAAAAATGTAATATTTACTAAAAAAAAAATAATATTTACTAAAAATAAATACTTTCGCCTCGTTCGAGCTACTTT</canonical>
            <polymorphic>CCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGGCCGCTGAGGAACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGGGAAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAACGGAACGGAAGAAATGAGGAAGAAGAAGATGGATGAGGTGCACCAAGAAGTGATTAGGATGATGTACAGAAAACTTATTTCTTTGATTGATGGATTGGAGGACTGATGTGTATTGGTTCACAGAGTGGTGTTAAAGCAAAATTGAGATATGAGATATGGGAGTTTGGAAAATGTGGGTGGCAAATTTTTTAGTAGTTCAGATTGCAAATCTACCGTATTTGCTYTTGTAGAGCATACCATATAAGGACATTTTGAGCTCAATTCACCAATATTTTATCAGTTGATAGAGTTTTGATATTTTCTGAAGGAACCGAAATAATTGATCTCAAAGTTGACGGTCAGGGAGCCCTTCTATTACATGTTAGGCTTCTATTCGAGAAAATAGGTACATCTAACAAAATTAAAAACGTTTCAGACCACTCGAATGAGTCCATTCTTCAGAGTTTAAAAGTATTCTATCTTCACAAAATGTGGTTTTTTGTCTGGTTCATAAAATTAAACGAAGTTCGTGATGTCGTTAAATCGAAATTCTGGAAAAAAAAATTAAAAAAGGAGTTTTTACAGTTTTCGAAGCTATTGTCGAATTTAAAAAAAAAACTGGGACCTGAGAATTTGAAAATCTTCGCTTTTTTTATCTACGAGAGCGCGGCAAAAATGTAATATTTACTAAAAAAAAAATAATATTTACTAAAAATAAATACTTTCGCCTCGTTCGAGCTACTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGATATGAGATATGGGAGTT</pcr_primer_p1>
		<pcr_primer_p2>TGAAACGTTTTTAATTTTGTTAGA</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>TTGAGATATGAGATATGGGAGTTTGGAAAATGTGGGTGGCAAATTTTTTAGTAGTTCAGATTGCAAATCTACCGTATTTGCTTTTGTAGAGCATACCATATAAGGACATTTTGAGCTCAATTCACCAATATTTTATCAGTTGATAGAGTTTTGATATTTTCTGAAGGAACCGAAATAATTGATCTCAAAGTTGACGGTCAGGGAGCCCTTCTATTACATGTTAGGCTTCTATTCGAGAAAATAGGTACATCTAACAAAATTAAAAACGTTTCA</canonical_amplicon>
		<polymorphic_amplicon>TTGAGATATGAGATATGGGAGTTTGGAAAATGTGGGTGGCAAATTTTTTAGTAGTTCAGATTGCAAATCTACCGTATTTGCTYTTGTAGAGCATACCATATAAGGACATTTTGAGCTCAATTCACCAATATTTTATCAGTTGATAGAGTTTTGATATTTTCTGAAGGAACCGAAATAATTGATCTCAAAGTTGACGGTCAGGGAGCCCTTCTATTACATGTTAGGCTTCTATTCGAGAAAATAGGTACATCTAACAAAATTAAAAACGTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9351</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>115776</contig_pos>
        <strand>+</strand>
        <context>CATCCAGAAG[A/G]AAAAGAGGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATATTTATTTTGTTGCCACCAACCACCCAAAAATGGTCTCATCCAGAAG</left_flank>
        <right_flank>AAAAGAGGAAAGAAGGAATCATGTAGAAATAGAGAAGAGTGATAAGAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGAGAATCAAATCAAACCTCACGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTTAAAAAAACTCGAGAAGTCCAGACAGAGCAAAAAGCGGCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAATATGTGGAAGTCTTTGCCAAGAAAACTCTTTTCTCTTTTTTTACGATGATGGGAAATGGACAATTTGTGGTCAGTTGGGGAGAGATGAAAGGATAAAAGCTGCTCTCTCCAGGATGTTCATTTTGTTTATTAGATGATGAAGAGAGGACAAAAAGTCGAGAAGAGGAAGACAAAGTATCGGATTTCGAATAGGGGATGGGAAGGTGTCCGGTGACTACAGAAAGGCAATTGTAACTGAAATAAAAGAGAAAGAAAGGAATGGAAAAATATTCAAATTGAATGCAAATTTAGATATTTATTTTGTTGCCACCAACCACCCAAAAATGGTCTCATCCAGAAGAAAAAGAGGAAAGAAGGAATCATGTAGAAATAGAGAAGAGTGATAAGAGAACGAGAGGGAATCACAGCAGGGCGAAGTGATGAAAAGGTAGATGATGCCTTATGCAAGAGAGCATGAAAATTAGAGAGACGACAGACACTATAAAAGAAGACGCAGGAAGTACGAGATGGAGGTGTGTAATCAGTTCGAACCGCTGTTGCTGGCTGGATAGACGCAATGTCCATTCATCCGGCCACACGAAGCGGTCGAATTGAGGGAGATAGTGGAGGAATCAGAGAGACGAGACTGATTGCATCGGATCTTCTCCCGATTATTTCTCTATGTATAGATCTCTCGAATTCACATTGTATTTCTTTAGGGGTCATTCTGGGTTCCGAAGCCTTGGGGGGTAGTAAAAAAGTGAACGACTTTTTGTCGGGAATTCGACTTGGATTTTGTAGATAAGGAAAGCAGTCAAGGTCGGATTGTTTTGTACTTTGACTAGTTTTCTTCATAGAAAAA</canonical>
            <polymorphic>AGGAGAATCAAATCAAACCTCACGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTTAAAAAAACTCGAGAAGTCCAGACAGAGCAAAAAGCGGCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAATATGTGGAAGTCTTTGCCAAGAAAACTCTTTTCTCTTTTTTTACGATGATGGGAAATGGACAATTTGTGGTCAGTTGGGGAGAGATGAAAGGATAAAAGCTGCTCTCTCCAGGATGTTCATTTTGTTTATTAGATGATGAAGAGAGGACAAAAAGTCGAGAAGAGGAAGACAAAGTATCGGATTTCGAATAGGGGATGGGAAGGTGTCCGGTGACTACAGAAAGGCAATTGTAACTGAAATAAAAGAGAAAGAAAGGAATGGAAAAATATTCAAATTGAATGCAAATTTAGATATTTATTTTGTTGCCACCAACCACCCAAAAATGGTCTCATCCAGAAGRAAAAGAGGAAAGAAGGAATCATGTAGAAATAGAGAAGAGTGATAAGAGAACGAGAGGGAATCACAGCAGGGCGAAGTGATGAAAAGGTAGATGATGCCTTATGCAAGAGAGCATGAAAATTAGAGAGACGACAGACACTATAAAAGAAGACGCAGGAAGTACGAGATGGAGGTGTGTAATCAGTTCGAACCGCTGTTGCTGGCTGGATAGACGCAATGTCCATTCATCCGGCCACACGAAGCGGTCGAATTGAGGGAGATAGTGGAGGAATCAGAGAGACGAGACTGATTGCATCGGATCTTCTCCCGATTATTTCTCTATGTATAGATCTCTCGAATTCACATTGTATTTCTTTAGGGGTCATTCTGGGTTCCGAAGCCTTGGGGGGTAGTAAAAAAGTGAACGACTTTTTGTCGGGAATTCGACTTGGATTTTGTAGATAAGGAAAGCAGTCAAGGTCGGATTGTTTTGTACTTTGACTAGTTTTCTTCATAGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAGAAAGGAATGGAAAAATA</pcr_primer_p1>
		<pcr_primer_p2>CTGCGTCTTCTTTTATAGTGTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAAGAAAGGAATGGAAAAATATTCAAATTGAATGCAAATTTAGATATTTATTTTGTTGCCACCAACCACCCAAAAATGGTCTCATCCAGAAGAAAAAGAGGAAAGAAGGAATCATGTAGAAATAGAGAAGAGTGATAAGAGAACGAGAGGGAATCACAGCAGGGCGAAGTGATGAAAAGGTAGATGATGCCTTATGCAAGAGAGCATGAAAATTAGAGAGACGACAGACACTATAAAAGAAGACGCAG</canonical_amplicon>
		<polymorphic_amplicon>AGAAAGAAAGGAATGGAAAAATATTCAAATTGAATGCAAATTTAGATATTTATTTTGTTGCCACCAACCACCCAAAAATGGTCTCATCCAGAAGRAAAAGAGGAAAGAAGGAATCATGTAGAAATAGAGAAGAGTGATAAGAGAACGAGAGGGAATCACAGCAGGGCGAAGTGATGAAAAGGTAGATGATGCCTTATGCAAGAGAGCATGAAAATTAGAGAGACGACAGACACTATAAAAGAAGACGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9352</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>115731</contig_pos>
        <strand>+</strand>
        <context>ATTTAGATAT[A/T]TATTTTGTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGAAAGAAAGGAATGGAAAAATATTCAAATTGAATGCAAATTTAGATAT</left_flank>
        <right_flank>TATTTTGTTGCCACCAACCACCCAAAAATGGTCTCATCCAGAAGAAAAAG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTCCGAAGGTTTGTAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTCACGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTTAAAAAAACTCGAGAAGTCCAGACAGAGCAAAAAGCGGCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAATATGTGGAAGTCTTTGCCAAGAAAACTCTTTTCTCTTTTTTTACGATGATGGGAAATGGACAATTTGTGGTCAGTTGGGGAGAGATGAAAGGATAAAAGCTGCTCTCTCCAGGATGTTCATTTTGTTTATTAGATGATGAAGAGAGGACAAAAAGTCGAGAAGAGGAAGACAAAGTATCGGATTTCGAATAGGGGATGGGAAGGTGTCCGGTGACTACAGAAAGGCAATTGTAACTGAAATAAAAGAGAAAGAAAGGAATGGAAAAATATTCAAATTGAATGCAAATTTAGATATTTATTTTGTTGCCACCAACCACCCAAAAATGGTCTCATCCAGAAGAAAAAGAGGAAAGAAGGAATCATGTAGAAATAGAGAAGAGTGATAAGAGAACGAGAGGGAATCACAGCAGGGCGAAGTGATGAAAAGGTAGATGATGCCTTATGCAAGAGAGCATGAAAATTAGAGAGACGACAGACACTATAAAAGAAGACGCAGGAAGTACGAGATGGAGGTGTGTAATCAGTTCGAACCGCTGTTGCTGGCTGGATAGACGCAATGTCCATTCATCCGGCCACACGAAGCGGTCGAATTGAGGGAGATAGTGGAGGAATCAGAGAGACGAGACTGATTGCATCGGATCTTCTCCCGATTATTTCTCTATGTATAGATCTCTCGAATTCACATTGTATTTCTTTAGGGGTCATTCTGGGTTCCGAAGCCTTGGGGGGTAGTAAAAAAGTGAACGACTTTTTGTCGGGAATTCGACTTGGATTTTGTAGATAAGGAAAGCAGTCA</canonical>
            <polymorphic>TGGTCCGAAGGTTTGTAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTCACGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTTAAAAAAACTCGAGAAGTCCAGACAGAGCAAAAAGCGGCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAATATGTGGAAGTCTTTGCCAAGAAAACTCTTTTCTCTTTTTTTACGATGATGGGAAATGGACAATTTGTGGTCAGTTGGGGAGAGATGAAAGGATAAAAGCTGCTCTCTCCAGGATGTTCATTTTGTTTATTAGATGATGAAGAGAGGACAAAAAGTCGAGAAGAGGAAGACAAAGTATCGGATTTCGAATAGGGGATGGGAAGGTGTCCGGTGACTACAGAAAGGCAATTGTAACTGAAATAAAAGAGAAAGAAAGGAATGGAAAAATATTCAAATTGAATGCAAATTTAGATATWTATTTTGTTGCCACCAACCACCCAAAAATGGTCTCATCCAGAAGAAAAAGAGGAAAGAAGGAATCATGTAGAAATAGAGAAGAGTGATAAGAGAACGAGAGGGAATCACAGCAGGGCGAAGTGATGAAAAGGTAGATGATGCCTTATGCAAGAGAGCATGAAAATTAGAGAGACGACAGACACTATAAAAGAAGACGCAGGAAGTACGAGATGGAGGTGTGTAATCAGTTCGAACCGCTGTTGCTGGCTGGATAGACGCAATGTCCATTCATCCGGCCACACGAAGCGGTCGAATTGAGGGAGATAGTGGAGGAATCAGAGAGACGAGACTGATTGCATCGGATCTTCTCCCGATTATTTCTCTATGTATAGATCTCTCGAATTCACATTGTATTTCTTTAGGGGTCATTCTGGGTTCCGAAGCCTTGGGGGGTAGTAAAAAAGTGAACGACTTTTTGTCGGGAATTCGACTTGGATTTTGTAGATAAGGAAAGCAGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGGCAATTGTAACTGAAATA</pcr_primer_p1>
		<pcr_primer_p2>TCTCTAATTTTCATGCTCTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAAGGCAATTGTAACTGAAATAAAAGAGAAAGAAAGGAATGGAAAAATATTCAAATTGAATGCAAATTTAGATATTTATTTTGTTGCCACCAACCACCCAAAAATGGTCTCATCCAGAAGAAAAAGAGGAAAGAAGGAATCATGTAGAAATAGAGAAGAGTGATAAGAGAACGAGAGGGAATCACAGCAGGGCGAAGTGATGAAAAGGTAGATGATGCCTTATGCAAGAGAGCATGAAAATTAGAGA</canonical_amplicon>
		<polymorphic_amplicon>GAAAGGCAATTGTAACTGAAATAAAAGAGAAAGAAAGGAATGGAAAAATATTCAAATTGAATGCAAATTTAGATATWTATTTTGTTGCCACCAACCACCCAAAAATGGTCTCATCCAGAAGAAAAAGAGGAAAGAAGGAATCATGTAGAAATAGAGAAGAGTGATAAGAGAACGAGAGGGAATCACAGCAGGGCGAAGTGATGAAAAGGTAGATGATGCCTTATGCAAGAGAGCATGAAAATTAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9353</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>115577</contig_pos>
        <strand>+</strand>
        <context>AGAWGATGAA[A/G]AGAGGACAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATAAAAGCTGCTCTCTCCAGGATGTTCATTTTGTTTATTAGATGATGAA</left_flank>
        <right_flank>AGAGGACAAAAAGTCGAGAAGAGGAAGACAAAGTATCGGATTTCGAATAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCGTTGAACTCATTTAATATGCATCCGTCTGTCGCCTCTCTCCTCTTCGTTCTTGGGTTTTTCTCACATTTTACACTTTGGTCTCATTTTTGTAGGTTTTATTAGTATTTGTTAATGGTATCTAGAACTTTCCTGACTGGAGATCTAAAACTTTGGTCCGAAGGTTTGTAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTCACGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTTAAAAAAACTCGAGAAGTCCAGACAGAGCAAAAAGCGGCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAATATGTGGAAGTCTTTGCCAAGAAAACTCTTTTCTCTTTTTTTACGATGATGGGAAATGGACAATTTGTGGTCAGTTGGGGAGAGATGAAAGGATAAAAGCTGCTCTCTCCAGGATGTTCATTTTGTTTATTAGATGATGAAGAGAGGACAAAAAGTCGAGAAGAGGAAGACAAAGTATCGGATTTCGAATAGGGGATGGGAAGGTGTCCGGTGACTACAGAAAGGCAATTGTAACTGAAATAAAAGAGAAAGAAAGGAATGGAAAAATATTCAAATTGAATGCAAATTTAGATATTTATTTTGTTGCCACCAACCACCCAAAAATGGTCTCATCCAGAAGAAAAAGAGGAAAGAAGGAATCATGTAGAAATAGAGAAGAGTGATAAGAGAACGAGAGGGAATCACAGCAGGGCGAAGTGATGAAAAGGTAGATGATGCCTTATGCAAGAGAGCATGAAAATTAGAGAGACGACAGACACTATAAAAGAAGACGCAGGAAGTACGAGATGGAGGTGTGTAATCAGTTCGAACCGCTGTTGCTGGCTGGATAGACGCAATGTCCATTCATCCGGCCACACGAAGCGGTCGAATTGAGGGAGATAGTGGAGGAATCAGAGAGACGAGACTGATTGCATCGGATCT</canonical>
            <polymorphic>CCCGTTGAACTCATTTAATATGCATCCGTCTGTCGCCTCTCTCCTCTTCGTTCTTGGGTTTTTCTCACATTTTACACTTTGGTCTCATTTTTGTAGGTTTTATTAGTATTTGTTAATGGTATCTAGAACTTTCCTGACTGGAGATCTAAAACTTTGGTCCGAAGGTTTGTAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTCACGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTTAAAAAAACTCGAGAAGTCCAGACAGAGCAAAAAGCGGCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAATATGTGGAAGTCTTTGCCAAGAAAACTCTTTTCTCTTTTTTTACGATGATGGGAAATGGACAATTTGTGGTCAGTTGGGGAGAGATGAAAGGATAAAAGCTGCTCTCTCCAGGATGTTCATTTTGTTTATTAGATGATGAARAGAGGACAAAAAGTCGAGAAGAGGAAGACAAAGTATCGGATTTCGAATAGGGGATGGGAAGGTGTCCGGTGACTACAGAAAGGCAATTGTAACTGAAATAAAAGAGAAAGAAAGGAATGGAAAAATATTCAAATTGAATGCAAATTTAGATATTTATTTTGTTGCCACCAACCACCCAAAAATGGTCTCATCCAGAAGAAAAAGAGGAAAGAAGGAATCATGTAGAAATAGAGAAGAGTGATAAGAGAACGAGAGGGAATCACAGCAGGGCGAAGTGATGAAAAGGTAGATGATGCCTTATGCAAGAGAGCATGAAAATTAGAGAGACGACAGACACTATAAAAGAAGACGCAGGAAGTACGAGATGGAGGTGTGTAATCAGTTCGAACCGCTGTTGCTGGCTGGATAGACGCAATGTCCATTCATCCGGCCACACGAAGCGGTCGAATTGAGGGAGATAGTGGAGGAATCAGAGAGACGAGACTGATTGCATCGGATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCTTTGCCAAGAAAACTCT</pcr_primer_p1>
		<pcr_primer_p2>TCCTTTCTTTCTCTTTTATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTCTTTGCCAAGAAAACTCTTTTCTCTTTTTTTACGATGATGGGAAATGGACAATTTGTGGTCAGTTGGGGAGAGATGAAAGGATAAAAGCTGCTCTCTCCAGGATGTTCATTTTGTTTATTAGATGATGAAGAGAGGACAAAAAGTCGAGAAGAGGAAGACAAAGTATCGGATTTCGAATAGGGGATGGGAAGGTGTCCGGTGACTACAGAAAGGCAATTGTAACTGAAATAAAAGAGAAAGAAAGGA</canonical_amplicon>
		<polymorphic_amplicon>AGTCTTTGCCAAGAAAACTCTTTTCTCTTTTTTTACGATGATGGGAAATGGACAATTTGTGGTCAGTTGGGGAGAGATGAAAGGATAAAAGCTGCTCTCTCCAGGATGTTCATTTTGTTTATTAGATGATGAARAGAGGACAAAAAGTCGAGAAGAGGAAGACAAAGTATCGGATTTCGAATAGGGGATGGGAAGGTGTCCGGTGACTACAGAAAGGCAATTGTAACTGAAATAAAAGAGAAAGAAAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9354</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>115570</contig_pos>
        <strand>+</strand>
        <context>GTTTATTAGA[A/T]GATGAARAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGAAAGGATAAAAGCTGCTCTCTCCAGGATGTTCATTTTGTTTATTAGA</left_flank>
        <right_flank>GATGAAGAGAGGACAAAAAGTCGAGAAGAGGAAGACAAAGTATCGGATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTACGGCCCGTTGAACTCATTTAATATGCATCCGTCTGTCGCCTCTCTCCTCTTCGTTCTTGGGTTTTTCTCACATTTTACACTTTGGTCTCATTTTTGTAGGTTTTATTAGTATTTGTTAATGGTATCTAGAACTTTCCTGACTGGAGATCTAAAACTTTGGTCCGAAGGTTTGTAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTCACGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTTAAAAAAACTCGAGAAGTCCAGACAGAGCAAAAAGCGGCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAATATGTGGAAGTCTTTGCCAAGAAAACTCTTTTCTCTTTTTTTACGATGATGGGAAATGGACAATTTGTGGTCAGTTGGGGAGAGATGAAAGGATAAAAGCTGCTCTCTCCAGGATGTTCATTTTGTTTATTAGATGATGAAGAGAGGACAAAAAGTCGAGAAGAGGAAGACAAAGTATCGGATTTCGAATAGGGGATGGGAAGGTGTCCGGTGACTACAGAAAGGCAATTGTAACTGAAATAAAAGAGAAAGAAAGGAATGGAAAAATATTCAAATTGAATGCAAATTTAGATATTTATTTTGTTGCCACCAACCACCCAAAAATGGTCTCATCCAGAAGAAAAAGAGGAAAGAAGGAATCATGTAGAAATAGAGAAGAGTGATAAGAGAACGAGAGGGAATCACAGCAGGGCGAAGTGATGAAAAGGTAGATGATGCCTTATGCAAGAGAGCATGAAAATTAGAGAGACGACAGACACTATAAAAGAAGACGCAGGAAGTACGAGATGGAGGTGTGTAATCAGTTCGAACCGCTGTTGCTGGCTGGATAGACGCAATGTCCATTCATCCGGCCACACGAAGCGGTCGAATTGAGGGAGATAGTGGAGGAATCAGAGAGACGAGACTGATTGCAT</canonical>
            <polymorphic>TTTACGGCCCGTTGAACTCATTTAATATGCATCCGTCTGTCGCCTCTCTCCTCTTCGTTCTTGGGTTTTTCTCACATTTTACACTTTGGTCTCATTTTTGTAGGTTTTATTAGTATTTGTTAATGGTATCTAGAACTTTCCTGACTGGAGATCTAAAACTTTGGTCCGAAGGTTTGTAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTCACGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTTAAAAAAACTCGAGAAGTCCAGACAGAGCAAAAAGCGGCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAATATGTGGAAGTCTTTGCCAAGAAAACTCTTTTCTCTTTTTTTACGATGATGGGAAATGGACAATTTGTGGTCAGTTGGGGAGAGATGAAAGGATAAAAGCTGCTCTCTCCAGGATGTTCATTTTGTTTATTAGAWGATGAAGAGAGGACAAAAAGTCGAGAAGAGGAAGACAAAGTATCGGATTTCGAATAGGGGATGGGAAGGTGTCCGGTGACTACAGAAAGGCAATTGTAACTGAAATAAAAGAGAAAGAAAGGAATGGAAAAATATTCAAATTGAATGCAAATTTAGATATTTATTTTGTTGCCACCAACCACCCAAAAATGGTCTCATCCAGAAGAAAAAGAGGAAAGAAGGAATCATGTAGAAATAGAGAAGAGTGATAAGAGAACGAGAGGGAATCACAGCAGGGCGAAGTGATGAAAAGGTAGATGATGCCTTATGCAAGAGAGCATGAAAATTAGAGAGACGACAGACACTATAAAAGAAGACGCAGGAAGTACGAGATGGAGGTGTGTAATCAGTTCGAACCGCTGTTGCTGGCTGGATAGACGCAATGTCCATTCATCCGGCCACACGAAGCGGTCGAATTGAGGGAGATAGTGGAGGAATCAGAGAGACGAGACTGATTGCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCTTTGCCAAGAAAACTCT</pcr_primer_p1>
		<pcr_primer_p2>TCCTTTCTTTCTCTTTTATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTCTTTGCCAAGAAAACTCTTTTCTCTTTTTTTACGATGATGGGAAATGGACAATTTGTGGTCAGTTGGGGAGAGATGAAAGGATAAAAGCTGCTCTCTCCAGGATGTTCATTTTGTTTATTAGATGATGAAGAGAGGACAAAAAGTCGAGAAGAGGAAGACAAAGTATCGGATTTCGAATAGGGGATGGGAAGGTGTCCGGTGACTACAGAAAGGCAATTGTAACTGAAATAAAAGAGAAAGAAAGGA</canonical_amplicon>
		<polymorphic_amplicon>AGTCTTTGCCAAGAAAACTCTTTTCTCTTTTTTTACGATGATGGGAAATGGACAATTTGTGGTCAGTTGGGGAGAGATGAAAGGATAAAAGCTGCTCTCTCCAGGATGTTCATTTTGTTTATTAGAWGATGAAGAGAGGACAAAAAGTCGAGAAGAGGAAGACAAAGTATCGGATTTCGAATAGGGGATGGGAAGGTGTCCGGTGACTACAGAAAGGCAATTGTAACTGAAATAAAAGAGAAAGAAAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9355</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>115386</contig_pos>
        <strand></strand>
        <context>GCRAAAAGCG[G/A]CTGAAAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GCCAATTTATAGTTAAAAAAACTCGAGAAGTCCAGACAGAGCAAAAAGCG</left_flank>
        <right_flank>CTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAAT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACTTTAAAAATCTGGTTGGAATTTCAGAGTGATTCAAAACCTTACAAAAAAAAACTTATTCTATTCCACTCTAAACTGATATTAATTGTAAGAATCTTCAGGATACAAAAAGAAGAACTAGGCTTCCTCCAGAAAAGGAGTTCAGAGAACTCTGTGAAGGTTGCTAGGCGCGAAAAGCAGTATTTACGGCCCGTTGAACTCATTTAATATGCATCCGTCTGTCGCCTCTCTCCTCTTCGTTCTTGGGTTTTTCTCACATTTTACACTTTGGTCTCATTTTTGTAGGTTTTATTAGTATTTGTTAATGGTATCTAGAACTTTCCTGACTGGAGATCTAAAACTTTGGTCCGAAGGTTTGTAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTCACGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTTAAAAAAACTCGAGAAGTCCAGACAGAGCAAAAAGCGGCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAATATGTGGAAGTCTTTGCCAAGAAAACTCTTTTCTCTTTTTTTACGATGATGGGAAATGGACAATTTGTGGTCAGTTGGGGAGAGATGAAAGGATAAAAGCTGCTCTCTCCAGGATGTTCATTTTGTTTATTAGATGATGAAGAGAGGACAAAAAGTCGAGAAGAGGAAGACAAAGTATCGGATTTCGAATAGGGGATGGGAAGGTGTCCGGTGACTACAGAAAGGCAATTGTAACTGAAATAAAAGAGAAAGAAAGGAATGGAAAAATATTCAAATTGAATGCAAATTTAGATATTTATTTTGTTGCCACCAACCACCCAAAAATGGTCTCATCCAGAAGAAAAAGAGGAAAGAAGGAATCATGTAGAAATAGAGAAGAGTGATAAGAGAACGAGAGGGAATCACAGCAGGGCGAAGTGATGAAAAGGTAGATGATGCCTTATGCAAGAGA</canonical>
            <polymorphic>CAACTTTAAAAATCTGGTTGGAATTTCAGAGTGATTCAAAACCTTACAAAAAAAAACTTATTCTATTCCACTCTAAACTGATATTAATTGTAAGAATCTTCAGGATACAAAAAGAAGAACTAGGCTTCCTCCAGAAAAGGAGTTCAGAGAACTCTGTGAAGGTTGCTAGGCGCGAAAAGCAGTATTTACGGCCCGTTGAACTCATTTAATATGCATCCGTCTGTCGCCTCTCTCCTCTTCGTTCTTGGGTTTTTCTCACATTTTACACTTTGGTCTCATTTTTGTAGGTTTTATTAGTATTTGTTAATGGTATCTAGAACTTTCCTGACTGGAGATCTAAAACTTTGGTCCGAAGGTTTGTAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTCACGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTTAAAAAAACTCGAGAAGTCCAGACAGAGCAAAAAGCGRCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAATATGTGGAAGTCTTTGCCAAGAAAACTCTTTTCTCTTTTTTTACGATGATGGGAAATGGACAATTTGTGGTCAGTTGGGGAGAGATGAAAGGATAAAAGCTGCTCTCTCCAGGATGTTCATTTTGTTTATTAGATGATGAAGAGAGGACAAAAAGTCGAGAAGAGGAAGACAAAGTATCGGATTTCGAATAGGGGATGGGAAGGTGTCCGGTGACTACAGAAAGGCAATTGTAACTGAAATAAAAGAGAAAGAAAGGAATGGAAAAATATTCAAATTGAATGCAAATTTAGATATTTATTTTGTTGCCACCAACCACCCAAAAATGGTCTCATCCAGAAGAAAAAGAGGAAAGAAGGAATCATGTAGAAATAGAGAAGAGTGATAAGAGAACGAGAGGGAATCACAGCAGGGCGAAGTGATGAAAAGGTAGATGATGCCTTATGCAAGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 349 151</canonical_bands>
                <polymorphic_bands>651 349</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>352 259 124 106 67 50 42</canonical_bands>
                <polymorphic_bands>352 259 124 106 92 67</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGAACTTTCCTGACTGGAGAT</pcr_primer_p1>
		<pcr_primer_p2>ACATATTGTGGGCTGTACTAACT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CTAGAACTTTCCTGACTGGAGATCTAAAACTTTGGTCCGAAGGTTTGTAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTCACGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTTAAAAAAACTCGAGAAGTCCAGACAGAGCAAAAAGCGGCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAATATGT</canonical_amplicon>
		<polymorphic_amplicon>CTAGAACTTTCCTGACTGGAGATCTAAAACTTTGGTCCGAAGGTTTGTAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTCACGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTTAAAAAAACTCGAGAAGTCCAGACAGAGCAAAAAGCGRCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAATATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9356</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>115350</contig_pos>
        <strand>+</strand>
        <context>ATTTATAGTT[A/T]AAAAAACTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTT</left_flank>
        <right_flank>AAAAAACTCGAGAAGTCCAGACAGAGCAAAAAGCGGCTGAAAAAAAGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGAAACAAATTGCCAATACCTGGGATCAAAATATCAACTTTAAAAATCTGGTTGGAATTTCAGAGTGATTCAAAACCTTACAAAAAAAAACTTATTCTATTCCACTCTAAACTGATATTAATTGTAAGAATCTTCAGGATACAAAAAGAAGAACTAGGCTTCCTCCAGAAAAGGAGTTCAGAGAACTCTGTGAAGGTTGCTAGGCGCGAAAAGCAGTATTTACGGCCCGTTGAACTCATTTAATATGCATCCGTCTGTCGCCTCTCTCCTCTTCGTTCTTGGGTTTTTCTCACATTTTACACTTTGGTCTCATTTTTGTAGGTTTTATTAGTATTTGTTAATGGTATCTAGAACTTTCCTGACTGGAGATCTAAAACTTTGGTCCGAAGGTTTGTAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTCACGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTTAAAAAAACTCGAGAAGTCCAGACAGAGCAAAAAGCGGCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAATATGTGGAAGTCTTTGCCAAGAAAACTCTTTTCTCTTTTTTTACGATGATGGGAAATGGACAATTTGTGGTCAGTTGGGGAGAGATGAAAGGATAAAAGCTGCTCTCTCCAGGATGTTCATTTTGTTTATTAGATGATGAAGAGAGGACAAAAAGTCGAGAAGAGGAAGACAAAGTATCGGATTTCGAATAGGGGATGGGAAGGTGTCCGGTGACTACAGAAAGGCAATTGTAACTGAAATAAAAGAGAAAGAAAGGAATGGAAAAATATTCAAATTGAATGCAAATTTAGATATTTATTTTGTTGCCACCAACCACCCAAAAATGGTCTCATCCAGAAGAAAAAGAGGAAAGAAGGAATCATGTAGAAATAGAGAAGAGTGATAAGAGAACGAGAGGGAATCACAGCAGGGCGA</canonical>
            <polymorphic>TTGGAAACAAATTGCCAATACCTGGGATCAAAATATCAACTTTAAAAATCTGGTTGGAATTTCAGAGTGATTCAAAACCTTACAAAAAAAAACTTATTCTATTCCACTCTAAACTGATATTAATTGTAAGAATCTTCAGGATACAAAAAGAAGAACTAGGCTTCCTCCAGAAAAGGAGTTCAGAGAACTCTGTGAAGGTTGCTAGGCGCGAAAAGCAGTATTTACGGCCCGTTGAACTCATTTAATATGCATCCGTCTGTCGCCTCTCTCCTCTTCGTTCTTGGGTTTTTCTCACATTTTACACTTTGGTCTCATTTTTGTAGGTTTTATTAGTATTTGTTAATGGTATCTAGAACTTTCCTGACTGGAGATCTAAAACTTTGGTCCGAAGGTTTGTAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTCACGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTTWAAAAAACTCGAGAAGTCCAGACAGAGCAAAAAGCGGCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAATATGTGGAAGTCTTTGCCAAGAAAACTCTTTTCTCTTTTTTTACGATGATGGGAAATGGACAATTTGTGGTCAGTTGGGGAGAGATGAAAGGATAAAAGCTGCTCTCTCCAGGATGTTCATTTTGTTTATTAGATGATGAAGAGAGGACAAAAAGTCGAGAAGAGGAAGACAAAGTATCGGATTTCGAATAGGGGATGGGAAGGTGTCCGGTGACTACAGAAAGGCAATTGTAACTGAAATAAAAGAGAAAGAAAGGAATGGAAAAATATTCAAATTGAATGCAAATTTAGATATTTATTTTGTTGCCACCAACCACCCAAAAATGGTCTCATCCAGAAGAAAAAGAGGAAAGAAGGAATCATGTAGAAATAGAGAAGAGTGATAAGAGAACGAGAGGGAATCACAGCAGGGCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 137 122 98 78 42 21</canonical_bands>
                <polymorphic_bands>523 137 122 98 78 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGAACTTTCCTGACTGGAGAT</pcr_primer_p1>
		<pcr_primer_p2>ACATATTGTGGGCTGTACTAACT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CTAGAACTTTCCTGACTGGAGATCTAAAACTTTGGTCCGAAGGTTTGTAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTCACGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTTAAAAAAACTCGAGAAGTCCAGACAGAGCAAAAAGCGGCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAATATGT</canonical_amplicon>
		<polymorphic_amplicon>CTAGAACTTTCCTGACTGGAGATCTAAAACTTTGGTCCGAAGGTTTGTAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTCACGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTTWAAAAAACTCGAGAAGTCCAGACAGAGCAAAAAGCGGCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAATATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9357</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>115298</contig_pos>
        <strand>+</strand>
        <context>ATCAAACCTM[A/G]CGAATTATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTC</left_flank>
        <right_flank>CGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGGGGATGAACGAATCTGGGTGAAACTTTGTGGAAAACTGGAGAAAACTATTGGAAACAAATTGCCAATACCTGGGATCAAAATATCAACTTTAAAAATCTGGTTGGAATTTCAGAGTGATTCAAAACCTTACAAAAAAAAACTTATTCTATTCCACTCTAAACTGATATTAATTGTAAGAATCTTCAGGATACAAAAAGAAGAACTAGGCTTCCTCCAGAAAAGGAGTTCAGAGAACTCTGTGAAGGTTGCTAGGCGCGAAAAGCAGTATTTACGGCCCGTTGAACTCATTTAATATGCATCCGTCTGTCGCCTCTCTCCTCTTCGTTCTTGGGTTTTTCTCACATTTTACACTTTGGTCTCATTTTTGTAGGTTTTATTAGTATTTGTTAATGGTATCTAGAACTTTCCTGACTGGAGATCTAAAACTTTGGTCCGAAGGTTTGTAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTCACGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTTAAAAAAACTCGAGAAGTCCAGACAGAGCAAAAAGCGGCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAATATGTGGAAGTCTTTGCCAAGAAAACTCTTTTCTCTTTTTTTACGATGATGGGAAATGGACAATTTGTGGTCAGTTGGGGAGAGATGAAAGGATAAAAGCTGCTCTCTCCAGGATGTTCATTTTGTTTATTAGATGATGAAGAGAGGACAAAAAGTCGAGAAGAGGAAGACAAAGTATCGGATTTCGAATAGGGGATGGGAAGGTGTCCGGTGACTACAGAAAGGCAATTGTAACTGAAATAAAAGAGAAAGAAAGGAATGGAAAAATATTCAAATTGAATGCAAATTTAGATATTTATTTTGTTGCCACCAACCACCCAAAAATGGTCTCATCCAGAAGAAAAAGAGGAAAGAAGGAATCAT</canonical>
            <polymorphic>TCTGGGGATGAACGAATCTGGGTGAAACTTTGTGGAAAACTGGAGAAAACTATTGGAAACAAATTGCCAATACCTGGGATCAAAATATCAACTTTAAAAATCTGGTTGGAATTTCAGAGTGATTCAAAACCTTACAAAAAAAAACTTATTCTATTCCACTCTAAACTGATATTAATTGTAAGAATCTTCAGGATACAAAAAGAAGAACTAGGCTTCCTCCAGAAAAGGAGTTCAGAGAACTCTGTGAAGGTTGCTAGGCGCGAAAAGCAGTATTTACGGCCCGTTGAACTCATTTAATATGCATCCGTCTGTCGCCTCTCTCCTCTTCGTTCTTGGGTTTTTCTCACATTTTACACTTTGGTCTCATTTTTGTAGGTTTTATTAGTATTTGTTAATGGTATCTAGAACTTTCCTGACTGGAGATCTAAAACTTTGGTCCGAAGGTTTGTAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTCRCGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTTAAAAAAACTCGAGAAGTCCAGACAGAGCAAAAAGCGGCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAATATGTGGAAGTCTTTGCCAAGAAAACTCTTTTCTCTTTTTTTACGATGATGGGAAATGGACAATTTGTGGTCAGTTGGGGAGAGATGAAAGGATAAAAGCTGCTCTCTCCAGGATGTTCATTTTGTTTATTAGATGATGAAGAGAGGACAAAAAGTCGAGAAGAGGAAGACAAAGTATCGGATTTCGAATAGGGGATGGGAAGGTGTCCGGTGACTACAGAAAGGCAATTGTAACTGAAATAAAAGAGAAAGAAAGGAATGGAAAAATATTCAAATTGAATGCAAATTTAGATATTTATTTTGTTGCCACCAACCACCCAAAAATGGTCTCATCCAGAAGAAAAAGAGGAAAGAAGGAATCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>145 137 100 96 93 88 87 63 47 37 24 20 19 10 9 9 7 7 2</canonical_bands>
                <polymorphic_bands>164 137 100 96 93 88 87 63 47 37 24 20 10 9 9 7 7 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGAACTTTCCTGACTGGAGAT</pcr_primer_p1>
		<pcr_primer_p2>ACATATTGTGGGCTGTACTAACT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CTAGAACTTTCCTGACTGGAGATCTAAAACTTTGGTCCGAAGGTTTGTAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTCACGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTTAAAAAAACTCGAGAAGTCCAGACAGAGCAAAAAGCGGCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAATATGT</canonical_amplicon>
		<polymorphic_amplicon>CTAGAACTTTCCTGACTGGAGATCTAAAACTTTGGTCCGAAGGTTTGTAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTCRCGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTTAAAAAAACTCGAGAAGTCCAGACAGAGCAAAAAGCGGCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAATATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9358</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>115297</contig_pos>
        <strand>+</strand>
        <context>AATCAAACCT[A/C]RCGAATTATA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCT</left_flank>
        <right_flank>ACGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAG</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTGGGGATGAACGAATCTGGGTGAAACTTTGTGGAAAACTGGAGAAAACTATTGGAAACAAATTGCCAATACCTGGGATCAAAATATCAACTTTAAAAATCTGGTTGGAATTTCAGAGTGATTCAAAACCTTACAAAAAAAAACTTATTCTATTCCACTCTAAACTGATATTAATTGTAAGAATCTTCAGGATACAAAAAGAAGAACTAGGCTTCCTCCAGAAAAGGAGTTCAGAGAACTCTGTGAAGGTTGCTAGGCGCGAAAAGCAGTATTTACGGCCCGTTGAACTCATTTAATATGCATCCGTCTGTCGCCTCTCTCCTCTTCGTTCTTGGGTTTTTCTCACATTTTACACTTTGGTCTCATTTTTGTAGGTTTTATTAGTATTTGTTAATGGTATCTAGAACTTTCCTGACTGGAGATCTAAAACTTTGGTCCGAAGGTTTGTAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTCACGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTTAAAAAAACTCGAGAAGTCCAGACAGAGCAAAAAGCGGCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAATATGTGGAAGTCTTTGCCAAGAAAACTCTTTTCTCTTTTTTTACGATGATGGGAAATGGACAATTTGTGGTCAGTTGGGGAGAGATGAAAGGATAAAAGCTGCTCTCTCCAGGATGTTCATTTTGTTTATTAGATGATGAAGAGAGGACAAAAAGTCGAGAAGAGGAAGACAAAGTATCGGATTTCGAATAGGGGATGGGAAGGTGTCCGGTGACTACAGAAAGGCAATTGTAACTGAAATAAAAGAGAAAGAAAGGAATGGAAAAATATTCAAATTGAATGCAAATTTAGATATTTATTTTGTTGCCACCAACCACCCAAAAATGGTCTCATCCAGAAGAAAAAGAGGAAAGAAGGAATCA</canonical>
            <polymorphic>CTCTGGGGATGAACGAATCTGGGTGAAACTTTGTGGAAAACTGGAGAAAACTATTGGAAACAAATTGCCAATACCTGGGATCAAAATATCAACTTTAAAAATCTGGTTGGAATTTCAGAGTGATTCAAAACCTTACAAAAAAAAACTTATTCTATTCCACTCTAAACTGATATTAATTGTAAGAATCTTCAGGATACAAAAAGAAGAACTAGGCTTCCTCCAGAAAAGGAGTTCAGAGAACTCTGTGAAGGTTGCTAGGCGCGAAAAGCAGTATTTACGGCCCGTTGAACTCATTTAATATGCATCCGTCTGTCGCCTCTCTCCTCTTCGTTCTTGGGTTTTTCTCACATTTTACACTTTGGTCTCATTTTTGTAGGTTTTATTAGTATTTGTTAATGGTATCTAGAACTTTCCTGACTGGAGATCTAAAACTTTGGTCCGAAGGTTTGTAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTMACGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTTAAAAAAACTCGAGAAGTCCAGACAGAGCAAAAAGCGGCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAATATGTGGAAGTCTTTGCCAAGAAAACTCTTTTCTCTTTTTTTACGATGATGGGAAATGGACAATTTGTGGTCAGTTGGGGAGAGATGAAAGGATAAAAGCTGCTCTCTCCAGGATGTTCATTTTGTTTATTAGATGATGAAGAGAGGACAAAAAGTCGAGAAGAGGAAGACAAAGTATCGGATTTCGAATAGGGGATGGGAAGGTGTCCGGTGACTACAGAAAGGCAATTGTAACTGAAATAAAAGAGAAAGAAAGGAATGGAAAAATATTCAAATTGAATGCAAATTTAGATATTTATTTTGTTGCCACCAACCACCCAAAAATGGTCTCATCCAGAAGAAAAAGAGGAAAGAAGGAATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>145 137 100 96 93 88 87 63 46 37 25 20 19 10 9 9 7 7 2</canonical_bands>
                <polymorphic_bands>164 137 100 96 93 88 87 63 46 37 25 20 10 9 9 7 7 2</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>225 190 183 177 87 62 30 28 10 8</canonical_bands>
                <polymorphic_bands>225 190 183 177 149 30 28 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGAACTTTCCTGACTGGAGAT</pcr_primer_p1>
		<pcr_primer_p2>ACATATTGTGGGCTGTACTAACT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CTAGAACTTTCCTGACTGGAGATCTAAAACTTTGGTCCGAAGGTTTGTAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTCACGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTTAAAAAAACTCGAGAAGTCCAGACAGAGCAAAAAGCGGCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAATATGT</canonical_amplicon>
		<polymorphic_amplicon>CTAGAACTTTCCTGACTGGAGATCTAAAACTTTGGTCCGAAGGTTTGTAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTMACGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTTAAAAAAACTCGAGAAGTCCAGACAGAGCAAAAAGCGGCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAATATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9359</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>197768</contig_pos>
        <strand>+</strand>
        <context>GATCGATACT[A/C]TTTTAGAGKR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACAAGCAAATCTTCCCTAGATCTAGCTTCATCGGCCGAAGATCGATACT</left_flank>
        <right_flank>TTTTAGAGTAATCCAGGTTTCTAAAATTTTCCGCTGTTTCAAAGTATTCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTAGCAGCCGAATTCAAAATACCTCCAAAATTCTAACATAACGCCATCCTATACTTTCACTTTGAGACCAATTATCTCAATTTCTTTACGAGATATCAAAAATCCGTCAACTTATAACATGTTTGTCATAGTAGCACCAATATTTTATCTGTTGACAGATTTTTCAAAGCTCTACTCAAATTGAGATAACTGAGCTCCGCTTGTGATGACGTAAATAAAGTATTACTTATTGAACTGAGAAATTTCAGCTCTTTTCGATTTTCCGGTTCCCAAGTTTTCCAATTTCGAATACAAGTCTCTCCTAGATATAATCTTTTTAAAAAAACTGCTGAAGATCAGCCTCAAACACCTACACCATTGATCTTCGACATAAAGCAGACATATGTCGCGAAGAAGAAGACCTGAAGAGATAAACGATCTACCGTGAAGAATCTCAACCCATCAAAACAAGCAAATCTTCCCTAGATCTAGCTTCATCGGCCGAAGATCGATACTATTTTAGAGTAATCCAGGTTTCTAAAATTTTCCGCTGTTTCAAAGTATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGAAAAATGAATTATGAAATCAGTTATTAATTTGATTTTACGATTTTCGAGATTTTCAGAGTTCCTCGTACTTATAGATTATAGACCTCTGATCTACTACCAGACCGTAGACACCGATCCCTATCAGCTCTAGATCTTCCCTTTCGTCTCTTCTTTCATGCGAGGGTATCTTATTTTTCCCTTACACTACCGATTCCTGCCCGATTTTTTCATCCAGGCCTCCCATTCCTAGAAAACGAAACTCTAGTCTTTCTATCCTCGGAATATCCGGATATTAGATCTTATGGTATTTCTAATGAGAAAGTCTTTTGAACGGTTTCGAACACTAGTTTTTCGTGCTATCTGGTAGATCAAAAGAGA</canonical>
            <polymorphic>AAAATTAGCAGCCGAATTCAAAATACCTCCAAAATTCTAACATAACGCCATCCTATACTTTCACTTTGAGACCAATTATCTCAATTTCTTTACGAGATATCAAAAATCCGTCAACTTATAACATGTTTGTCATAGTAGCACCAATATTTTATCTGTTGACAGATTTTTCAAAGCTCTACTCAAATTGAGATAACTGAGCTCCGCTTGTGATGACGTAAATAAAGTATTACTTATTGAACTGAGAAATTTCAGCTCTTTTCGATTTTCCGGTTCCCAAGTTTTCCAATTTCGAATACAAGTCTCTCCTAGATATAATCTTTTTAAAAAAACTGCTGAAGATCAGCCTCAAACACCTACACCATTGATCTTCGACATAAAGCAGACATATGTCGCGAAGAAGAAGACCTGAAGAGATAAACGATCTACCGTGAAGAATCTCAACCCATCAAAACAAGCAAATCTTCCCTAGATCTAGCTTCATCGGCCGAAGATCGATACTMTTTTAGAGTAATCCAGGTTTCTAAAATTTTCCGCTGTTTCAAAGTATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGAAAAATGAATTATGAAATCAGTTATTAATTTGATTTTACGATTTTCGAGATTTTCAGAGTTCCTCGTACTTATAGATTATAGACCTCTGATCTACTACCAGACCGTAGACACCGATCCCTATCAGCTCTAGATCTTCCCTTTCGTCTCTTCTTTCATGCGAGGGTATCTTATTTTTCCCTTACACTACCGATTCCTGCCCGATTTTTTCATCCAGGCCTCCCATTCCTAGAAAACGAAACTCTAGTCTTTCTATCCTCGGAATATCCGGATATTAGATCTTATGGTATTTCTAATGAGAAAGTCTTTTGAACGGTTTCGAACACTAGTTTTTCGTGCTATCTGGTAGATCAAAAGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGAAGAAGACCTGAAGAGATAA</pcr_primer_p1>
		<pcr_primer_p2>TCTTTTCAAAACTTGATGATAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGAAGAAGACCTGAAGAGATAAACGATCTACCGTGAAGAATCTCAACCCATCAAAACAAGCAAATCTTCCCTAGATCTAGCTTCATCGGCCGAAGATCGATACTATTTTAGAGTAATCCAGGTTTCTAAAATTTTCCGCTGTTTCAAAGTATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GAAGAAGAAGACCTGAAGAGATAAACGATCTACCGTGAAGAATCTCAACCCATCAAAACAAGCAAATCTTCCCTAGATCTAGCTTCATCGGCCGAAGATCGATACTMTTTTAGAGTAATCCAGGTTTCTAAAATTTTCCGCTGTTTCAAAGTATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9360</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>197777</contig_pos>
        <strand>+</strand>
        <context>TMTTTTAGAG[G/T]RATCCAGGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATCTTCCCTAGATCTAGCTTCATCGGCCGAAGATCGATACTATTTTAGAG</left_flank>
        <right_flank>AATCCAGGTTTCTAAAATTTTCCGCTGTTTCAAAGTATTCATAAAGATTT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCGAATTCAAAATACCTCCAAAATTCTAACATAACGCCATCCTATACTTTCACTTTGAGACCAATTATCTCAATTTCTTTACGAGATATCAAAAATCCGTCAACTTATAACATGTTTGTCATAGTAGCACCAATATTTTATCTGTTGACAGATTTTTCAAAGCTCTACTCAAATTGAGATAACTGAGCTCCGCTTGTGATGACGTAAATAAAGTATTACTTATTGAACTGAGAAATTTCAGCTCTTTTCGATTTTCCGGTTCCCAAGTTTTCCAATTTCGAATACAAGTCTCTCCTAGATATAATCTTTTTAAAAAAACTGCTGAAGATCAGCCTCAAACACCTACACCATTGATCTTCGACATAAAGCAGACATATGTCGCGAAGAAGAAGACCTGAAGAGATAAACGATCTACCGTGAAGAATCTCAACCCATCAAAACAAGCAAATCTTCCCTAGATCTAGCTTCATCGGCCGAAGATCGATACTATTTTAGAGTAATCCAGGTTTCTAAAATTTTCCGCTGTTTCAAAGTATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGAAAAATGAATTATGAAATCAGTTATTAATTTGATTTTACGATTTTCGAGATTTTCAGAGTTCCTCGTACTTATAGATTATAGACCTCTGATCTACTACCAGACCGTAGACACCGATCCCTATCAGCTCTAGATCTTCCCTTTCGTCTCTTCTTTCATGCGAGGGTATCTTATTTTTCCCTTACACTACCGATTCCTGCCCGATTTTTTCATCCAGGCCTCCCATTCCTAGAAAACGAAACTCTAGTCTTTCTATCCTCGGAATATCCGGATATTAGATCTTATGGTATTTCTAATGAGAAAGTCTTTTGAACGGTTTCGAACACTAGTTTTTCGTGCTATCTGGTAGATCAAAAGAGAAATTATGTC</canonical>
            <polymorphic>AGCCGAATTCAAAATACCTCCAAAATTCTAACATAACGCCATCCTATACTTTCACTTTGAGACCAATTATCTCAATTTCTTTACGAGATATCAAAAATCCGTCAACTTATAACATGTTTGTCATAGTAGCACCAATATTTTATCTGTTGACAGATTTTTCAAAGCTCTACTCAAATTGAGATAACTGAGCTCCGCTTGTGATGACGTAAATAAAGTATTACTTATTGAACTGAGAAATTTCAGCTCTTTTCGATTTTCCGGTTCCCAAGTTTTCCAATTTCGAATACAAGTCTCTCCTAGATATAATCTTTTTAAAAAAACTGCTGAAGATCAGCCTCAAACACCTACACCATTGATCTTCGACATAAAGCAGACATATGTCGCGAAGAAGAAGACCTGAAGAGATAAACGATCTACCGTGAAGAATCTCAACCCATCAAAACAAGCAAATCTTCCCTAGATCTAGCTTCATCGGCCGAAGATCGATACTATTTTAGAGKAATCCAGGTTTCTAAAATTTTCCGCTGTTTCAAAGTATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGAAAAATGAATTATGAAATCAGTTATTAATTTGATTTTACGATTTTCGAGATTTTCAGAGTTCCTCGTACTTATAGATTATAGACCTCTGATCTACTACCAGACCGTAGACACCGATCCCTATCAGCTCTAGATCTTCCCTTTCGTCTCTTCTTTCATGCGAGGGTATCTTATTTTTCCCTTACACTACCGATTCCTGCCCGATTTTTTCATCCAGGCCTCCCATTCCTAGAAAACGAAACTCTAGTCTTTCTATCCTCGGAATATCCGGATATTAGATCTTATGGTATTTCTAATGAGAAAGTCTTTTGAACGGTTTCGAACACTAGTTTTTCGTGCTATCTGGTAGATCAAAAGAGAAATTATGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGAAGAAGACCTGAAGAGATAA</pcr_primer_p1>
		<pcr_primer_p2>TCTTTTCAAAACTTGATGATAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGAAGAAGACCTGAAGAGATAAACGATCTACCGTGAAGAATCTCAACCCATCAAAACAAGCAAATCTTCCCTAGATCTAGCTTCATCGGCCGAAGATCGATACTATTTTAGAGTAATCCAGGTTTCTAAAATTTTCCGCTGTTTCAAAGTATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GAAGAAGAAGACCTGAAGAGATAAACGATCTACCGTGAAGAATCTCAACCCATCAAAACAAGCAAATCTTCCCTAGATCTAGCTTCATCGGCCGAAGATCGATACTATTTTAGAGKAATCCAGGTTTCTAAAATTTTCCGCTGTTTCAAAGTATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9361</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>197778</contig_pos>
        <strand>+</strand>
        <context>MTTTTAGAGK[A/G]ATCCAGGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTCCCTAGATCTAGCTTCATCGGCCGAAGATCGATACTATTTTAGAGT</left_flank>
        <right_flank>ATCCAGGTTTCTAAAATTTTCCGCTGTTTCAAAGTATTCATAAAGATTTC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCGAATTCAAAATACCTCCAAAATTCTAACATAACGCCATCCTATACTTTCACTTTGAGACCAATTATCTCAATTTCTTTACGAGATATCAAAAATCCGTCAACTTATAACATGTTTGTCATAGTAGCACCAATATTTTATCTGTTGACAGATTTTTCAAAGCTCTACTCAAATTGAGATAACTGAGCTCCGCTTGTGATGACGTAAATAAAGTATTACTTATTGAACTGAGAAATTTCAGCTCTTTTCGATTTTCCGGTTCCCAAGTTTTCCAATTTCGAATACAAGTCTCTCCTAGATATAATCTTTTTAAAAAAACTGCTGAAGATCAGCCTCAAACACCTACACCATTGATCTTCGACATAAAGCAGACATATGTCGCGAAGAAGAAGACCTGAAGAGATAAACGATCTACCGTGAAGAATCTCAACCCATCAAAACAAGCAAATCTTCCCTAGATCTAGCTTCATCGGCCGAAGATCGATACTATTTTAGAGTAATCCAGGTTTCTAAAATTTTCCGCTGTTTCAAAGTATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGAAAAATGAATTATGAAATCAGTTATTAATTTGATTTTACGATTTTCGAGATTTTCAGAGTTCCTCGTACTTATAGATTATAGACCTCTGATCTACTACCAGACCGTAGACACCGATCCCTATCAGCTCTAGATCTTCCCTTTCGTCTCTTCTTTCATGCGAGGGTATCTTATTTTTCCCTTACACTACCGATTCCTGCCCGATTTTTTCATCCAGGCCTCCCATTCCTAGAAAACGAAACTCTAGTCTTTCTATCCTCGGAATATCCGGATATTAGATCTTATGGTATTTCTAATGAGAAAGTCTTTTGAACGGTTTCGAACACTAGTTTTTCGTGCTATCTGGTAGATCAAAAGAGAAATTATGTCA</canonical>
            <polymorphic>GCCGAATTCAAAATACCTCCAAAATTCTAACATAACGCCATCCTATACTTTCACTTTGAGACCAATTATCTCAATTTCTTTACGAGATATCAAAAATCCGTCAACTTATAACATGTTTGTCATAGTAGCACCAATATTTTATCTGTTGACAGATTTTTCAAAGCTCTACTCAAATTGAGATAACTGAGCTCCGCTTGTGATGACGTAAATAAAGTATTACTTATTGAACTGAGAAATTTCAGCTCTTTTCGATTTTCCGGTTCCCAAGTTTTCCAATTTCGAATACAAGTCTCTCCTAGATATAATCTTTTTAAAAAAACTGCTGAAGATCAGCCTCAAACACCTACACCATTGATCTTCGACATAAAGCAGACATATGTCGCGAAGAAGAAGACCTGAAGAGATAAACGATCTACCGTGAAGAATCTCAACCCATCAAAACAAGCAAATCTTCCCTAGATCTAGCTTCATCGGCCGAAGATCGATACTATTTTAGAGTRATCCAGGTTTCTAAAATTTTCCGCTGTTTCAAAGTATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGAAAAATGAATTATGAAATCAGTTATTAATTTGATTTTACGATTTTCGAGATTTTCAGAGTTCCTCGTACTTATAGATTATAGACCTCTGATCTACTACCAGACCGTAGACACCGATCCCTATCAGCTCTAGATCTTCCCTTTCGTCTCTTCTTTCATGCGAGGGTATCTTATTTTTCCCTTACACTACCGATTCCTGCCCGATTTTTTCATCCAGGCCTCCCATTCCTAGAAAACGAAACTCTAGTCTTTCTATCCTCGGAATATCCGGATATTAGATCTTATGGTATTTCTAATGAGAAAGTCTTTTGAACGGTTTCGAACACTAGTTTTTCGTGCTATCTGGTAGATCAAAAGAGAAATTATGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGAAGAAGACCTGAAGAGATAA</pcr_primer_p1>
		<pcr_primer_p2>TCTTTTCAAAACTTGATGATAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGAAGAAGACCTGAAGAGATAAACGATCTACCGTGAAGAATCTCAACCCATCAAAACAAGCAAATCTTCCCTAGATCTAGCTTCATCGGCCGAAGATCGATACTATTTTAGAGTAATCCAGGTTTCTAAAATTTTCCGCTGTTTCAAAGTATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GAAGAAGAAGACCTGAAGAGATAAACGATCTACCGTGAAGAATCTCAACCCATCAAAACAAGCAAATCTTCCCTAGATCTAGCTTCATCGGCCGAAGATCGATACTATTTTAGAGTRATCCAGGTTTCTAAAATTTTCCGCTGTTTCAAAGTATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9362</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>197914</contig_pos>
        <strand>+</strand>
        <context>TGAAAAGAAA[A/T]ATGAATTATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGAAA</left_flank>
        <right_flank>ATGAATTATGAAATCAGTTATTAATTTGATTTTACGATTTTCGAGATTTT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTATCTGTTGACAGATTTTTCAAAGCTCTACTCAAATTGAGATAACTGAGCTCCGCTTGTGATGACGTAAATAAAGTATTACTTATTGAACTGAGAAATTTCAGCTCTTTTCGATTTTCCGGTTCCCAAGTTTTCCAATTTCGAATACAAGTCTCTCCTAGATATAATCTTTTTAAAAAAACTGCTGAAGATCAGCCTCAAACACCTACACCATTGATCTTCGACATAAAGCAGACATATGTCGCGAAGAAGAAGACCTGAAGAGATAAACGATCTACCGTGAAGAATCTCAACCCATCAAAACAAGCAAATCTTCCCTAGATCTAGCTTCATCGGCCGAAGATCGATACTATTTTAGAGTAATCCAGGTTTCTAAAATTTTCCGCTGTTTCAAAGTATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGAAAAATGAATTATGAAATCAGTTATTAATTTGATTTTACGATTTTCGAGATTTTCAGAGTTCCTCGTACTTATAGATTATAGACCTCTGATCTACTACCAGACCGTAGACACCGATCCCTATCAGCTCTAGATCTTCCCTTTCGTCTCTTCTTTCATGCGAGGGTATCTTATTTTTCCCTTACACTACCGATTCCTGCCCGATTTTTTCATCCAGGCCTCCCATTCCTAGAAAACGAAACTCTAGTCTTTCTATCCTCGGAATATCCGGATATTAGATCTTATGGTATTTCTAATGAGAAAGTCTTTTGAACGGTTTCGAACACTAGTTTTTCGTGCTATCTGGTAGATCAAAAGAGAAATTATGTCAAGATTTTCCGAGAAATTCAAAGTTACTACGGTACCATGCTCCTGTAAAAGTCATCATGGTGTTTCAAAATTTTACGTCATTGTCAGCCTTTTTATCCAGAGGAGCCTTGATTTCTGGAAATGTCATCAAACAAGTT</canonical>
            <polymorphic>TTTTATCTGTTGACAGATTTTTCAAAGCTCTACTCAAATTGAGATAACTGAGCTCCGCTTGTGATGACGTAAATAAAGTATTACTTATTGAACTGAGAAATTTCAGCTCTTTTCGATTTTCCGGTTCCCAAGTTTTCCAATTTCGAATACAAGTCTCTCCTAGATATAATCTTTTTAAAAAAACTGCTGAAGATCAGCCTCAAACACCTACACCATTGATCTTCGACATAAAGCAGACATATGTCGCGAAGAAGAAGACCTGAAGAGATAAACGATCTACCGTGAAGAATCTCAACCCATCAAAACAAGCAAATCTTCCCTAGATCTAGCTTCATCGGCCGAAGATCGATACTATTTTAGAGTAATCCAGGTTTCTAAAATTTTCCGCTGTTTCAAAGTATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGAAAWATGAATTATGAAATCAGTTATTAATTTGATTTTACGATTTTCGAGATTTTCAGAGTTCCTCGTACTTATAGATTATAGACCTCTGATCTACTACCAGACCGTAGACACCGATCCCTATCAGCTCTAGATCTTCCCTTTCGTCTCTTCTTTCATGCGAGGGTATCTTATTTTTCCCTTACACTACCGATTCCTGCCCGATTTTTTCATCCAGGCCTCCCATTCCTAGAAAACGAAACTCTAGTCTTTCTATCCTCGGAATATCCGGATATTAGATCTTATGGTATTTCTAATGAGAAAGTCTTTTGAACGGTTTCGAACACTAGTTTTTCGTGCTATCTGGTAGATCAAAAGAGAAATTATGTCAAGATTTTCCGAGAAATTCAAAGTTACTACGGTACCATGCTCCTGTAAAAGTCATCATGGTGTTTCAAAATTTTACGTCATTGTCAGCCTTTTTATCCAGAGGAGCCTTGATTTCTGGAAATGTCATCAAACAAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTCATAAAGATTTCGGAGCTA</pcr_primer_p1>
		<pcr_primer_p2>AAAGGGAAGATCTAGAGCTGATA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGAAAAATGAATTATGAAATCAGTTATTAATTTGATTTTACGATTTTCGAGATTTTCAGAGTTCCTCGTACTTATAGATTATAGACCTCTGATCTACTACCAGACCGTAGACACCGATCCCTATCAGCTCTAGATCTTCCCTTT</canonical_amplicon>
		<polymorphic_amplicon>TATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGAAAWATGAATTATGAAATCAGTTATTAATTTGATTTTACGATTTTCGAGATTTTCAGAGTTCCTCGTACTTATAGATTATAGACCTCTGATCTACTACCAGACCGTAGACACCGATCCCTATCAGCTCTAGATCTTCCCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9363</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>197972</contig_pos>
        <strand>+</strand>
        <context>TWTCAGAGTT[C/T]CTCGTACTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGAAATCAGTTATTAATTTGATTTTACGATTTTCGAGATTTTCAGAGTT</left_flank>
        <right_flank>CTCGTACTTATAGATTATAGACCTCTGATCTACTACCAGACCGTAGACAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTGATGACGTAAATAAAGTATTACTTATTGAACTGAGAAATTTCAGCTCTTTTCGATTTTCCGGTTCCCAAGTTTTCCAATTTCGAATACAAGTCTCTCCTAGATATAATCTTTTTAAAAAAACTGCTGAAGATCAGCCTCAAACACCTACACCATTGATCTTCGACATAAAGCAGACATATGTCGCGAAGAAGAAGACCTGAAGAGATAAACGATCTACCGTGAAGAATCTCAACCCATCAAAACAAGCAAATCTTCCCTAGATCTAGCTTCATCGGCCGAAGATCGATACTATTTTAGAGTAATCCAGGTTTCTAAAATTTTCCGCTGTTTCAAAGTATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGAAAAATGAATTATGAAATCAGTTATTAATTTGATTTTACGATTTTCGAGATTTTCAGAGTTCCTCGTACTTATAGATTATAGACCTCTGATCTACTACCAGACCGTAGACACCGATCCCTATCAGCTCTAGATCTTCCCTTTCGTCTCTTCTTTCATGCGAGGGTATCTTATTTTTCCCTTACACTACCGATTCCTGCCCGATTTTTTCATCCAGGCCTCCCATTCCTAGAAAACGAAACTCTAGTCTTTCTATCCTCGGAATATCCGGATATTAGATCTTATGGTATTTCTAATGAGAAAGTCTTTTGAACGGTTTCGAACACTAGTTTTTCGTGCTATCTGGTAGATCAAAAGAGAAATTATGTCAAGATTTTCCGAGAAATTCAAAGTTACTACGGTACCATGCTCCTGTAAAAGTCATCATGGTGTTTCAAAATTTTACGTCATTGTCAGCCTTTTTATCCAGAGGAGCCTTGATTTCTGGAAATGTCATCAAACAAGTTGGGGTGGCTCCAGCACTCGAGACTTGCAATTTTGAATTGTCTAGAATTAACAAGGTGC</canonical>
            <polymorphic>TTGTGATGACGTAAATAAAGTATTACTTATTGAACTGAGAAATTTCAGCTCTTTTCGATTTTCCGGTTCCCAAGTTTTCCAATTTCGAATACAAGTCTCTCCTAGATATAATCTTTTTAAAAAAACTGCTGAAGATCAGCCTCAAACACCTACACCATTGATCTTCGACATAAAGCAGACATATGTCGCGAAGAAGAAGACCTGAAGAGATAAACGATCTACCGTGAAGAATCTCAACCCATCAAAACAAGCAAATCTTCCCTAGATCTAGCTTCATCGGCCGAAGATCGATACTATTTTAGAGTAATCCAGGTTTCTAAAATTTTCCGCTGTTTCAAAGTATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGAAAAATGAATTATGAAATCAGTTATTAATTTGATTTTACGATTTTCGAGATTTTCAGAGTTYCTCGTACTTATAGATTATAGACCTCTGATCTACTACCAGACCGTAGACACCGATCCCTATCAGCTCTAGATCTTCCCTTTCGTCTCTTCTTTCATGCGAGGGTATCTTATTTTTCCCTTACACTACCGATTCCTGCCCGATTTTTTCATCCAGGCCTCCCATTCCTAGAAAACGAAACTCTAGTCTTTCTATCCTCGGAATATCCGGATATTAGATCTTATGGTATTTCTAATGAGAAAGTCTTTTGAACGGTTTCGAACACTAGTTTTTCGTGCTATCTGGTAGATCAAAAGAGAAATTATGTCAAGATTTTCCGAGAAATTCAAAGTTACTACGGTACCATGCTCCTGTAAAAGTCATCATGGTGTTTCAAAATTTTACGTCATTGTCAGCCTTTTTATCCAGAGGAGCCTTGATTTCTGGAAATGTCATCAAACAAGTTGGGGTGGCTCCAGCACTCGAGACTTGCAATTTTGAATTGTCTAGAATTAACAAGGTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTCATAAAGATTTCGGAGCTA</pcr_primer_p1>
		<pcr_primer_p2>AAAGGGAAGATCTAGAGCTGATA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGAAAAATGAATTATGAAATCAGTTATTAATTTGATTTTACGATTTTCGAGATTTTCAGAGTTCCTCGTACTTATAGATTATAGACCTCTGATCTACTACCAGACCGTAGACACCGATCCCTATCAGCTCTAGATCTTCCCTTT</canonical_amplicon>
		<polymorphic_amplicon>TATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGAAAAATGAATTATGAAATCAGTTATTAATTTGATTTTACGATTTTCGAGATTTTCAGAGTTYCTCGTACTTATAGATTATAGACCTCTGATCTACTACCAGACCGTAGACACCGATCCCTATCAGCTCTAGATCTTCCCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9364</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>198092</contig_pos>
        <strand></strand>
        <context>TTTTTCCCTT[A/C]CACTACCGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCTTCCCTTTCGTCTCTTCTTTCATGCGAGGGTATCTTATTTTTCCCTT</left_flank>
        <right_flank>CACTACCGATTCCTGCCCGATTTTTTCATCCAGGCCTCCCATTCCTAGAA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAACTGCTGAAGATCAGCCTCAAACACCTACACCATTGATCTTCGACATAAAGCAGACATATGTCGCGAAGAAGAAGACCTGAAGAGATAAACGATCTACCGTGAAGAATCTCAACCCATCAAAACAAGCAAATCTTCCCTAGATCTAGCTTCATCGGCCGAAGATCGATACTATTTTAGAGTAATCCAGGTTTCTAAAATTTTCCGCTGTTTCAAAGTATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGAAAAATGAATTATGAAATCAGTTATTAATTTGATTTTACGATTTTCGAGATTTTCAGAGTTCCTCGTACTTATAGATTATAGACCTCTGATCTACTACCAGACCGTAGACACCGATCCCTATCAGCTCTAGATCTTCCCTTTCGTCTCTTCTTTCATGCGAGGGTATCTTATTTTTCCCTTACACTACCGATTCCTGCCCGATTTTTTCATCCAGGCCTCCCATTCCTAGAAAACGAAACTCTAGTCTTTCTATCCTCGGAATATCCGGATATTAGATCTTATGGTATTTCTAATGAGAAAGTCTTTTGAACGGTTTCGAACACTAGTTTTTCGTGCTATCTGGTAGATCAAAAGAGAAATTATGTCAAGATTTTCCGAGAAATTCAAAGTTACTACGGTACCATGCTCCTGTAAAAGTCATCATGGTGTTTCAAAATTTTACGTCATTGTCAGCCTTTTTATCCAGAGGAGCCTTGATTTCTGGAAATGTCATCAAACAAGTTGGGGTGGCTCCAGCACTCGAGACTTGCAATTTTGAATTGTCTAGAATTAACAAGGTGCAAAGTATTAGTTTTAAAACTCGATAGCTATTTGAAATTTTTCTGAGCAATTTTTTTTCTGAGCAGTTTCATCAATATGTTAGAATCCGCTTTTAATTTATTGCAGCAGTGTTTCGTCAGT</canonical>
            <polymorphic>AAAAACTGCTGAAGATCAGCCTCAAACACCTACACCATTGATCTTCGACATAAAGCAGACATATGTCGCGAAGAAGAAGACCTGAAGAGATAAACGATCTACCGTGAAGAATCTCAACCCATCAAAACAAGCAAATCTTCCCTAGATCTAGCTTCATCGGCCGAAGATCGATACTATTTTAGAGTAATCCAGGTTTCTAAAATTTTCCGCTGTTTCAAAGTATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGAAAAATGAATTATGAAATCAGTTATTAATTTGATTTTACGATTTTCGAGATTTTCAGAGTTCCTCGTACTTATAGATTATAGACCTCTGATCTACTACCAGACCGTAGACACCGATCCCTATCAGCTCTAGATCTTCCCTTTCGTCTCTTCTTTCATGCGAGGGTATCTTATTTTTCCCTTMCACTACCGATTCCTGCCCGATTTTTTCATCCAGGCCTCCCATTCCTAGAAAACGAAACTCTAGTCTTTCTATCCTCGGAATATCCGGATATTAGATCTTATGGTATTTCTAATGAGAAAGTCTTTTGAACGGTTTCGAACACTAGTTTTTCGTGCTATCTGGTAGATCAAAAGAGAAATTATGTCAAGATTTTCCGAGAAATTCAAAGTTACTACGGTACCATGCTCCTGTAAAAGTCATCATGGTGTTTCAAAATTTTACGTCATTGTCAGCCTTTTTATCCAGAGGAGCCTTGATTTCTGGAAATGTCATCAAACAAGTTGGGGTGGCTCCAGCACTCGAGACTTGCAATTTTGAATTGTCTAGAATTAACAAGGTGCAAAGTATTAGTTTTAAAACTCGATAGCTATTTGAAATTTTTCTGAGCAATTTTTTTTCTGAGCAGTTTCATCAATATGTTAGAATCCGCTTTTAATTTATTGCAGCAGTGTTTCGTCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGACACCGATCCCTATCAG</pcr_primer_p1>
		<pcr_primer_p2>TCTTTTGATCTACCAGATAGCAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAGACACCGATCCCTATCAGCTCTAGATCTTCCCTTTCGTCTCTTCTTTCATGCGAGGGTATCTTATTTTTCCCTTACACTACCGATTCCTGCCCGATTTTTTCATCCAGGCCTCCCATTCCTAGAAAACGAAACTCTAGTCTTTCTATCCTCGGAATATCCGGATATTAGATCTTATGGTATTTCTAATGAGAAAGTCTTTTGAACGGTTTCGAACACTAGTTTTTCGTGCTATCTGGTAGATCAAAAGA</canonical_amplicon>
		<polymorphic_amplicon>TAGACACCGATCCCTATCAGCTCTAGATCTTCCCTTTCGTCTCTTCTTTCATGCGAGGGTATCTTATTTTTCCCTTMCACTACCGATTCCTGCCCGATTTTTTCATCCAGGCCTCCCATTCCTAGAAAACGAAACTCTAGTCTTTCTATCCTCGGAATATCCGGATATTAGATCTTATGGTATTTCTAATGAGAAAGTCTTTTGAACGGTTTCGAACACTAGTTTTTCGTGCTATCTGGTAGATCAAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9365</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>200323</contig_pos>
        <strand></strand>
        <context>AGTTTGTGCT[C/T]GAAACTTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCACAGTCCTTGTGCATATTTTGTATACACTCTTGTTTGAGTTTGTGCT</left_flank>
        <right_flank>GAAACTTTCTCTCTGTCTCCTATCTCTTATCATCTACATTATCATCAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGTGATATTCGAATACTGATTACTATTGAATACTGTTCCAGTGGTCAGTATTCGCACAATGATCAGAATCATTCAAGTGATCACCGATTTTGAAACATTATGTATGAACAGGAAATCGTGGATTTAAAGCCAAAAATGTAAAAACATTCTTGCTAGGGAGTGTATTTTAGGATAGGTCTCGATTACATGGGTCCATCAAAAGTACTAGACTCAATTTGAACTTCTAAGCTTTTCGGAACCGTAAAATGTTAGAGCTTGATTTGAGATGTTTAGAAATCGGAAATTGCAAGTCATTTATTTTGCTGTTGGCTTAGGTTCAGTTTCATATCCTAGAATTTTGAAAGTTTGCATACTATCCATCAAATACAAAATTGTATTCATCTTCTTTCAATATATTTCTGAAACAGCAAGATTTTCAAAATATCTCGTCCATTCTATATGATGCTCCTCACAGTCCTTGTGCATATTTTGTATACACTCTTGTTTGAGTTTGTGCTCGAAACTTTCTCTCTGTCTCCTATCTCTTATCATCTACATTATCATCAATTTCTTTTTTCCTTATCTCTCTCCGTCTCTCCAACTCACTTCCCATATACACATGTGACTCTTCCAAAAATCGTATTCCAGGTTTCCCCCACTTCCCCCACCGCCAAAACGACGTCTACACTGGTCATGGAATTCTTTCGTGCGCCGCCTCAAACGGCACTGTTTCCAGTGACGTCGGCAGCGTTTGTCACAGCTGCTCTTCAACAATCATCGCCTTCGAATCTTCCAATTATTCCATCACCAACTGATATCATCACTACAGCCACATCCACATCTCCAGTGCCAATCACAACGTCATCATCACCTCCATGTCTTCCGATGTTCTTGAATTTTCCAAGTACATCAACAACAACCAGTATTCTGATGGATACTGTATTGGCTGCTCAGAAATTGAACCAACAGCAACAAGCAGCAGCTGCAGTGGCGGCAGCAGCAACAGCAGCAGCGACACC</canonical>
            <polymorphic>TTCGTGATATTCGAATACTGATTACTATTGAATACTGTTCCAGTGGTCAGTATTCGCACAATGATCAGAATCATTCAAGTGATCACCGATTTTGAAACATTATGTATGAACAGGAAATCGTGGATTTAAAGCCAAAAATGTAAAAACATTCTTGCTAGGGAGTGTATTTTAGGATAGGTCTCGATTACATGGGTCCATCAAAAGTACTAGACTCAATTTGAACTTCTAAGCTTTTCGGAACCGTAAAATGTTAGAGCTTGATTTGAGATGTTTAGAAATCGGAAATTGCAAGTCATTTATTTTGCTGTTGGCTTAGGTTCAGTTTCATATCCTAGAATTTTGAAAGTTTGCATACTATCCATCAAATACAAAATTGTATTCATCTTCTTTCAATATATTTCTGAAACAGCAAGATTTTCAAAATATCTCGTCCATTCTATATGATGCTCCTCACAGTCCTTGTGCATATTTTGTATACACTCTTGTTTGAGTTTGTGCTYGAAACTTTCTCTCTGTCTCCTATCTCTTATCATCTACATTATCATCAATTTCTTTTTTCCTTATCTCTCTCCGTCTCTCCAACTCACTTCCCATATACACATGTGACTCTTCCAAAAATCGTATTCCAGGTTTCCCCCACTTCCCCCACCGCCAAAACGACGTCTACACTGGTCATGGAATTCTTTCGTGCGCCGCCTCAAACGGCACTGTTTCCAGTGACGTCGGCAGCGTTTGTCACAGCTGCTCTTCAACAATCATCGCCTTCGAATCTTCCAATTATTCCATCACCAACTGATATCATCACTACAGCCACATCCACATCTCCAGTGCCAATCACAACGTCATCATCACCTCCATGTCTTCCGATGTTCTTGAATTTTCCAAGTACATCAACAACAACCAGTATTCTGATGGATACTGTATTGGCTGCTCAGAAATTGAACCAACAGCAACAAGCAGCAGCTGCAGTGGCGGCAGCAGCAACAGCAGCAGCGACACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>318 266 234 170 12</canonical_bands>
                <polymorphic_bands>584 234 170 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTATATGATGCTCCTCACAGTC</pcr_primer_p1>
		<pcr_primer_p2>AAGAATTCCATGACCAGTGTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTATATGATGCTCCTCACAGTCCTTGTGCATATTTTGTATACACTCTTGTTTGAGTTTGTGCTCGAAACTTTCTCTCTGTCTCCTATCTCTTATCATCTACATTATCATCAATTTCTTTTTTCCTTATCTCTCTCCGTCTCTCCAACTCACTTCCCATATACACATGTGACTCTTCCAAAAATCGTATTCCAGGTTTCCCCCACTTCCCCCACCGCCAAAACGACGTCTACACTGGTCATGGAATTCTT</canonical_amplicon>
		<polymorphic_amplicon>TCTATATGATGCTCCTCACAGTCCTTGTGCATATTTTGTATACACTCTTGTTTGAGTTTGTGCTYGAAACTTTCTCTCTGTCTCCTATCTCTTATCATCTACATTATCATCAATTTCTTTTTTCCTTATCTCTCTCCGTCTCTCCAACTCACTTCCCATATACACATGTGACTCTTCCAAAAATCGTATTCCAGGTTTCCCCCACTTCCCCCACCGCCAAAACGACGTCTACACTGGTCATGGAATTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9368</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>200199</contig_pos>
        <strand></strand>
        <context>ATACAAAATT[G/A]TATTCATCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CATATCCTAGAATTTTGAAAGTTTGCATACTATCCATCAAATACAAAATT</left_flank>
        <right_flank>TATTCATCTTCTTTCAATATATTTCTGAAACAGCAAGATTTTCAAAATAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTTTTCAATTGAACATTTTTAGAATAAGGATTACAGACTCCAATTAAAGTAATCGAACACCATTTGACAATATAACATTTGTGAACCTCTAAATATTTTTTTTGAAACTTACAACTTTCATTCGTGATATTCGAATACTGATTACTATTGAATACTGTTCCAGTGGTCAGTATTCGCACAATGATCAGAATCATTCAAGTGATCACCGATTTTGAAACATTATGTATGAACAGGAAATCGTGGATTTAAAGCCAAAAATGTAAAAACATTCTTGCTAGGGAGTGTATTTTAGGATAGGTCTCGATTACATGGGTCCATCAAAAGTACTAGACTCAATTTGAACTTCTAAGCTTTTCGGAACCGTAAAATGTTAGAGCTTGATTTGAGATGTTTAGAAATCGGAAATTGCAAGTCATTTATTTTGCTGTTGGCTTAGGTTCAGTTTCATATCCTAGAATTTTGAAAGTTTGCATACTATCCATCAAATACAAAATTGTATTCATCTTCTTTCAATATATTTCTGAAACAGCAAGATTTTCAAAATATCTCGTCCATTCTATATGATGCTCCTCACAGTCCTTGTGCATATTTTGTATACACTCTTGTTTGAGTTTGTGCTCGAAACTTTCTCTCTGTCTCCTATCTCTTATCATCTACATTATCATCAATTTCTTTTTTCCTTATCTCTCTCCGTCTCTCCAACTCACTTCCCATATACACATGTGACTCTTCCAAAAATCGTATTCCAGGTTTCCCCCACTTCCCCCACCGCCAAAACGACGTCTACACTGGTCATGGAATTCTTTCGTGCGCCGCCTCAAACGGCACTGTTTCCAGTGACGTCGGCAGCGTTTGTCACAGCTGCTCTTCAACAATCATCGCCTTCGAATCTTCCAATTATTCCATCACCAACTGATATCATCACTACAGCCACATCCACATCTCCAGTGCCAATCACAACGTCATCATCACCTCCATGTCTTCCGATGTTCTTGA</canonical>
            <polymorphic>AATTTTTTTCAATTGAACATTTTTAGAATAAGGATTACAGACTCCAATTAAAGTAATCGAACACCATTTGACAATATAACATTTGTGAACCTCTAAATATTTTTTTTGAAACTTACAACTTTCATTCGTGATATTCGAATACTGATTACTATTGAATACTGTTCCAGTGGTCAGTATTCGCACAATGATCAGAATCATTCAAGTGATCACCGATTTTGAAACATTATGTATGAACAGGAAATCGTGGATTTAAAGCCAAAAATGTAAAAACATTCTTGCTAGGGAGTGTATTTTAGGATAGGTCTCGATTACATGGGTCCATCAAAAGTACTAGACTCAATTTGAACTTCTAAGCTTTTCGGAACCGTAAAATGTTAGAGCTTGATTTGAGATGTTTAGAAATCGGAAATTGCAAGTCATTTATTTTGCTGTTGGCTTAGGTTCAGTTTCATATCCTAGAATTTTGAAAGTTTGCATACTATCCATCAAATACAAAATTRTATTCATCTTCTTTCAATATATTTCTGAAACAGCAAGATTTTCAAAATATCTCGTCCATTCTATATGATGCTCCTCACAGTCCTTGTGCATATTTTGTATACACTCTTGTTTGAGTTTGTGCTCGAAACTTTCTCTCTGTCTCCTATCTCTTATCATCTACATTATCATCAATTTCTTTTTTCCTTATCTCTCTCCGTCTCTCCAACTCACTTCCCATATACACATGTGACTCTTCCAAAAATCGTATTCCAGGTTTCCCCCACTTCCCCCACCGCCAAAACGACGTCTACACTGGTCATGGAATTCTTTCGTGCGCCGCCTCAAACGGCACTGTTTCCAGTGACGTCGGCAGCGTTTGTCACAGCTGCTCTTCAACAATCATCGCCTTCGAATCTTCCAATTATTCCATCACCAACTGATATCATCACTACAGCCACATCCACATCTCCAGTGCCAATCACAACGTCATCATCACCTCCATGTCTTCCGATGTTCTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAATTTGAACTTCTAAGCTTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTGTGAGGAGCATCATATAGAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TCAATTTGAACTTCTAAGCTTTTCGGAACCGTAAAATGTTAGAGCTTGATTTGAGATGTTTAGAAATCGGAAATTGCAAGTCATTTATTTTGCTGTTGGCTTAGGTTCAGTTTCATATCCTAGAATTTTGAAAGTTTGCATACTATCCATCAAATACAAAATTGTATTCATCTTCTTTCAATATATTTCTGAAACAGCAAGATTTTCAAAATATCTCGTCCATTCTATATGATGCTCCTCACAGT</canonical_amplicon>
		<polymorphic_amplicon>TCAATTTGAACTTCTAAGCTTTTCGGAACCGTAAAATGTTAGAGCTTGATTTGAGATGTTTAGAAATCGGAAATTGCAAGTCATTTATTTTGCTGTTGGCTTAGGTTCAGTTTCATATCCTAGAATTTTGAAAGTTTGCATACTATCCATCAAATACAAAATTRTATTCATCTTCTTTCAATATATTTCTGAAACAGCAAGATTTTCAAAATATCTCGTCCATTCTATATGATGCTCCTCACAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9369</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>200130</contig_pos>
        <strand></strand>
        <context>TTATTTTGCT[G/T]TTGGCTTAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTGATTTGAGATGTTTAGAAATCGGAAATTGCAAGTCATTTATTTTGCT</left_flank>
        <right_flank>TTGGCTTAGGTTCAGTTTCATATCCTAGAATTTTGAAAGTTTGCATACTA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAACCGAAAATTTTAAAGCTTGAGAAAATTTGAAACTTGGAAATTTTTTTATTTAAAAAAAAAAAGAATTTTTTTCAATTGAACATTTTTAGAATAAGGATTACAGACTCCAATTAAAGTAATCGAACACCATTTGACAATATAACATTTGTGAACCTCTAAATATTTTTTTTGAAACTTACAACTTTCATTCGTGATATTCGAATACTGATTACTATTGAATACTGTTCCAGTGGTCAGTATTCGCACAATGATCAGAATCATTCAAGTGATCACCGATTTTGAAACATTATGTATGAACAGGAAATCGTGGATTTAAAGCCAAAAATGTAAAAACATTCTTGCTAGGGAGTGTATTTTAGGATAGGTCTCGATTACATGGGTCCATCAAAAGTACTAGACTCAATTTGAACTTCTAAGCTTTTCGGAACCGTAAAATGTTAGAGCTTGATTTGAGATGTTTAGAAATCGGAAATTGCAAGTCATTTATTTTGCTGTTGGCTTAGGTTCAGTTTCATATCCTAGAATTTTGAAAGTTTGCATACTATCCATCAAATACAAAATTGTATTCATCTTCTTTCAATATATTTCTGAAACAGCAAGATTTTCAAAATATCTCGTCCATTCTATATGATGCTCCTCACAGTCCTTGTGCATATTTTGTATACACTCTTGTTTGAGTTTGTGCTCGAAACTTTCTCTCTGTCTCCTATCTCTTATCATCTACATTATCATCAATTTCTTTTTTCCTTATCTCTCTCCGTCTCTCCAACTCACTTCCCATATACACATGTGACTCTTCCAAAAATCGTATTCCAGGTTTCCCCCACTTCCCCCACCGCCAAAACGACGTCTACACTGGTCATGGAATTCTTTCGTGCGCCGCCTCAAACGGCACTGTTTCCAGTGACGTCGGCAGCGTTTGTCACAGCTGCTCTTCAACAATCATCGCCTTCGAATCTTCCAATTATTCCATCACCAACTGATATCATCACTA</canonical>
            <polymorphic>TTGAAACCGAAAATTTTAAAGCTTGAGAAAATTTGAAACTTGGAAATTTTTTTATTTAAAAAAAAAAAGAATTTTTTTCAATTGAACATTTTTAGAATAAGGATTACAGACTCCAATTAAAGTAATCGAACACCATTTGACAATATAACATTTGTGAACCTCTAAATATTTTTTTTGAAACTTACAACTTTCATTCGTGATATTCGAATACTGATTACTATTGAATACTGTTCCAGTGGTCAGTATTCGCACAATGATCAGAATCATTCAAGTGATCACCGATTTTGAAACATTATGTATGAACAGGAAATCGTGGATTTAAAGCCAAAAATGTAAAAACATTCTTGCTAGGGAGTGTATTTTAGGATAGGTCTCGATTACATGGGTCCATCAAAAGTACTAGACTCAATTTGAACTTCTAAGCTTTTCGGAACCGTAAAATGTTAGAGCTTGATTTGAGATGTTTAGAAATCGGAAATTGCAAGTCATTTATTTTGCTKTTGGCTTAGGTTCAGTTTCATATCCTAGAATTTTGAAAGTTTGCATACTATCCATCAAATACAAAATTGTATTCATCTTCTTTCAATATATTTCTGAAACAGCAAGATTTTCAAAATATCTCGTCCATTCTATATGATGCTCCTCACAGTCCTTGTGCATATTTTGTATACACTCTTGTTTGAGTTTGTGCTCGAAACTTTCTCTCTGTCTCCTATCTCTTATCATCTACATTATCATCAATTTCTTTTTTCCTTATCTCTCTCCGTCTCTCCAACTCACTTCCCATATACACATGTGACTCTTCCAAAAATCGTATTCCAGGTTTCCCCCACTTCCCCCACCGCCAAAACGACGTCTACACTGGTCATGGAATTCTTTCGTGCGCCGCCTCAAACGGCACTGTTTCCAGTGACGTCGGCAGCGTTTGTCACAGCTGCTCTTCAACAATCATCGCCTTCGAATCTTCCAATTATTCCATCACCAACTGATATCATCACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAATTTGAACTTCTAAGCTTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTGTGAGGAGCATCATATAGAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TCAATTTGAACTTCTAAGCTTTTCGGAACCGTAAAATGTTAGAGCTTGATTTGAGATGTTTAGAAATCGGAAATTGCAAGTCATTTATTTTGCTGTTGGCTTAGGTTCAGTTTCATATCCTAGAATTTTGAAAGTTTGCATACTATCCATCAAATACAAAATTGTATTCATCTTCTTTCAATATATTTCTGAAACAGCAAGATTTTCAAAATATCTCGTCCATTCTATATGATGCTCCTCACAGT</canonical_amplicon>
		<polymorphic_amplicon>TCAATTTGAACTTCTAAGCTTTTCGGAACCGTAAAATGTTAGAGCTTGATTTGAGATGTTTAGAAATCGGAAATTGCAAGTCATTTATTTTGCTKTTGGCTTAGGTTCAGTTTCATATCCTAGAATTTTGAAAGTTTGCATACTATCCATCAAATACAAAATTGTATTCATCTTCTTTCAATATATTTCTGAAACAGCAAGATTTTCAAAATATCTCGTCCATTCTATATGATGCTCCTCACAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9370</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>200061</contig_pos>
        <strand></strand>
        <context>AAGCTTTTCG[G/A]AACCGTAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CATGGGTCCATCAAAAGTACTAGACTCAATTTGAACTTCTAAGCTTTTCG</left_flank>
        <right_flank>AACCGTAAAATGTTAGAGCTTGATTTGAGATGTTTAGAAATCGGAAATTG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGGGGGAATGTTGATCAAAGCAGACAATCAGTATCACCAGACTCAATTTTGAAAAAAAAAACCACTTTTTGAAACCGAAAATTTTAAAGCTTGAGAAAATTTGAAACTTGGAAATTTTTTTATTTAAAAAAAAAAAGAATTTTTTTCAATTGAACATTTTTAGAATAAGGATTACAGACTCCAATTAAAGTAATCGAACACCATTTGACAATATAACATTTGTGAACCTCTAAATATTTTTTTTGAAACTTACAACTTTCATTCGTGATATTCGAATACTGATTACTATTGAATACTGTTCCAGTGGTCAGTATTCGCACAATGATCAGAATCATTCAAGTGATCACCGATTTTGAAACATTATGTATGAACAGGAAATCGTGGATTTAAAGCCAAAAATGTAAAAACATTCTTGCTAGGGAGTGTATTTTAGGATAGGTCTCGATTACATGGGTCCATCAAAAGTACTAGACTCAATTTGAACTTCTAAGCTTTTCGGAACCGTAAAATGTTAGAGCTTGATTTGAGATGTTTAGAAATCGGAAATTGCAAGTCATTTATTTTGCTGTTGGCTTAGGTTCAGTTTCATATCCTAGAATTTTGAAAGTTTGCATACTATCCATCAAATACAAAATTGTATTCATCTTCTTTCAATATATTTCTGAAACAGCAAGATTTTCAAAATATCTCGTCCATTCTATATGATGCTCCTCACAGTCCTTGTGCATATTTTGTATACACTCTTGTTTGAGTTTGTGCTCGAAACTTTCTCTCTGTCTCCTATCTCTTATCATCTACATTATCATCAATTTCTTTTTTCCTTATCTCTCTCCGTCTCTCCAACTCACTTCCCATATACACATGTGACTCTTCCAAAAATCGTATTCCAGGTTTCCCCCACTTCCCCCACCGCCAAAACGACGTCTACACTGGTCATGGAATTCTTTCGTGCGCCGCCTCAAACGGCACTGTTTCCAGTGACGTCGGCAGCGTTTGTCA</canonical>
            <polymorphic>AAGGGGGAATGTTGATCAAAGCAGACAATCAGTATCACCAGACTCAATTTTGAAAAAAAAAACCACTTTTTGAAACCGAAAATTTTAAAGCTTGAGAAAATTTGAAACTTGGAAATTTTTTTATTTAAAAAAAAAAAGAATTTTTTTCAATTGAACATTTTTAGAATAAGGATTACAGACTCCAATTAAAGTAATCGAACACCATTTGACAATATAACATTTGTGAACCTCTAAATATTTTTTTTGAAACTTACAACTTTCATTCGTGATATTCGAATACTGATTACTATTGAATACTGTTCCAGTGGTCAGTATTCGCACAATGATCAGAATCATTCAAGTGATCACCGATTTTGAAACATTATGTATGAACAGGAAATCGTGGATTTAAAGCCAAAAATGTAAAAACATTCTTGCTAGGGAGTGTATTTTAGGATAGGTCTCGATTACATGGGTCCATCAAAAGTACTAGACTCAATTTGAACTTCTAAGCTTTTCGRAACCGTAAAATGTTAGAGCTTGATTTGAGATGTTTAGAAATCGGAAATTGCAAGTCATTTATTTTGCTGTTGGCTTAGGTTCAGTTTCATATCCTAGAATTTTGAAAGTTTGCATACTATCCATCAAATACAAAATTGTATTCATCTTCTTTCAATATATTTCTGAAACAGCAAGATTTTCAAAATATCTCGTCCATTCTATATGATGCTCCTCACAGTCCTTGTGCATATTTTGTATACACTCTTGTTTGAGTTTGTGCTCGAAACTTTCTCTCTGTCTCCTATCTCTTATCATCTACATTATCATCAATTTCTTTTTTCCTTATCTCTCTCCGTCTCTCCAACTCACTTCCCATATACACATGTGACTCTTCCAAAAATCGTATTCCAGGTTTCCCCCACTTCCCCCACCGCCAAAACGACGTCTACACTGGTCATGGAATTCTTTCGTGCGCCGCCTCAAACGGCACTGTTTCCAGTGACGTCGGCAGCGTTTGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>499 455 46</canonical_bands>
                <polymorphic_bands>545 455</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>336 329 170 121 44</canonical_bands>
                <polymorphic_bands>336 329 214 121</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCACCGATTTTGAAACATTAT</pcr_primer_p1>
		<pcr_primer_p2>AGGATATGAAACTGAACCTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATCACCGATTTTGAAACATTATGTATGAACAGGAAATCGTGGATTTAAAGCCAAAAATGTAAAAACATTCTTGCTAGGGAGTGTATTTTAGGATAGGTCTCGATTACATGGGTCCATCAAAAGTACTAGACTCAATTTGAACTTCTAAGCTTTTCGGAACCGTAAAATGTTAGAGCTTGATTTGAGATGTTTAGAAATCGGAAATTGCAAGTCATTTATTTTGCTGTTGGCTTAGGTTCAGTTTCATATCCT</canonical_amplicon>
		<polymorphic_amplicon>ATCACCGATTTTGAAACATTATGTATGAACAGGAAATCGTGGATTTAAAGCCAAAAATGTAAAAACATTCTTGCTAGGGAGTGTATTTTAGGATAGGTCTCGATTACATGGGTCCATCAAAAGTACTAGACTCAATTTGAACTTCTAAGCTTTTCGRAACCGTAAAATGTTAGAGCTTGATTTGAGATGTTTAGAAATCGGAAATTGCAAGTCATTTATTTTGCTGTTGGCTTAGGTTCAGTTTCATATCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9371</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>200017</contig_pos>
        <strand></strand>
        <context>ATTACATGGG[T/C]CCATCAAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAACATTCTTGCTAGGGAGTGTATTTTAGGATAGGTCTCGATTACATGGG</left_flank>
        <right_flank>CCATCAAAAGTACTAGACTCAATTTGAACTTCTAAGCTTTTCGGAACCGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAATTTCTTGTCCCGAATTTTGAGTCATTTTATAAACTTTATCAAGGGGGAATGTTGATCAAAGCAGACAATCAGTATCACCAGACTCAATTTTGAAAAAAAAAACCACTTTTTGAAACCGAAAATTTTAAAGCTTGAGAAAATTTGAAACTTGGAAATTTTTTTATTTAAAAAAAAAAAGAATTTTTTTCAATTGAACATTTTTAGAATAAGGATTACAGACTCCAATTAAAGTAATCGAACACCATTTGACAATATAACATTTGTGAACCTCTAAATATTTTTTTTGAAACTTACAACTTTCATTCGTGATATTCGAATACTGATTACTATTGAATACTGTTCCAGTGGTCAGTATTCGCACAATGATCAGAATCATTCAAGTGATCACCGATTTTGAAACATTATGTATGAACAGGAAATCGTGGATTTAAAGCCAAAAATGTAAAAACATTCTTGCTAGGGAGTGTATTTTAGGATAGGTCTCGATTACATGGGTCCATCAAAAGTACTAGACTCAATTTGAACTTCTAAGCTTTTCGGAACCGTAAAATGTTAGAGCTTGATTTGAGATGTTTAGAAATCGGAAATTGCAAGTCATTTATTTTGCTGTTGGCTTAGGTTCAGTTTCATATCCTAGAATTTTGAAAGTTTGCATACTATCCATCAAATACAAAATTGTATTCATCTTCTTTCAATATATTTCTGAAACAGCAAGATTTTCAAAATATCTCGTCCATTCTATATGATGCTCCTCACAGTCCTTGTGCATATTTTGTATACACTCTTGTTTGAGTTTGTGCTCGAAACTTTCTCTCTGTCTCCTATCTCTTATCATCTACATTATCATCAATTTCTTTTTTCCTTATCTCTCTCCGTCTCTCCAACTCACTTCCCATATACACATGTGACTCTTCCAAAAATCGTATTCCAGGTTTCCCCCACTTCCCCCACCGCCAAAACGACGTCTACACTGGTCATGGAATTCTTTCGTGCGCC</canonical>
            <polymorphic>ATAATTTCTTGTCCCGAATTTTGAGTCATTTTATAAACTTTATCAAGGGGGAATGTTGATCAAAGCAGACAATCAGTATCACCAGACTCAATTTTGAAAAAAAAAACCACTTTTTGAAACCGAAAATTTTAAAGCTTGAGAAAATTTGAAACTTGGAAATTTTTTTATTTAAAAAAAAAAAGAATTTTTTTCAATTGAACATTTTTAGAATAAGGATTACAGACTCCAATTAAAGTAATCGAACACCATTTGACAATATAACATTTGTGAACCTCTAAATATTTTTTTTGAAACTTACAACTTTCATTCGTGATATTCGAATACTGATTACTATTGAATACTGTTCCAGTGGTCAGTATTCGCACAATGATCAGAATCATTCAAGTGATCACCGATTTTGAAACATTATGTATGAACAGGAAATCGTGGATTTAAAGCCAAAAATGTAAAAACATTCTTGCTAGGGAGTGTATTTTAGGATAGGTCTCGATTACATGGGYCCATCAAAAGTACTAGACTCAATTTGAACTTCTAAGCTTTTCGGAACCGTAAAATGTTAGAGCTTGATTTGAGATGTTTAGAAATCGGAAATTGCAAGTCATTTATTTTGCTGTTGGCTTAGGTTCAGTTTCATATCCTAGAATTTTGAAAGTTTGCATACTATCCATCAAATACAAAATTGTATTCATCTTCTTTCAATATATTTCTGAAACAGCAAGATTTTCAAAATATCTCGTCCATTCTATATGATGCTCCTCACAGTCCTTGTGCATATTTTGTATACACTCTTGTTTGAGTTTGTGCTCGAAACTTTCTCTCTGTCTCCTATCTCTTATCATCTACATTATCATCAATTTCTTTTTTCCTTATCTCTCTCCGTCTCTCCAACTCACTTCCCATATACACATGTGACTCTTCCAAAAATCGTATTCCAGGTTTCCCCCACTTCCCCCACCGCCAAAACGACGTCTACACTGGTCATGGAATTCTTTCGTGCGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTGAATACTGTTCCAGTGGT</pcr_primer_p1>
		<pcr_primer_p2>AAACATCTCAAATCAAGCTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTATTGAATACTGTTCCAGTGGTCAGTATTCGCACAATGATCAGAATCATTCAAGTGATCACCGATTTTGAAACATTATGTATGAACAGGAAATCGTGGATTTAAAGCCAAAAATGTAAAAACATTCTTGCTAGGGAGTGTATTTTAGGATAGGTCTCGATTACATGGGTCCATCAAAAGTACTAGACTCAATTTGAACTTCTAAGCTTTTCGGAACCGTAAAATGTTAGAGCTTGATTTGAGATGTTT</canonical_amplicon>
		<polymorphic_amplicon>CTATTGAATACTGTTCCAGTGGTCAGTATTCGCACAATGATCAGAATCATTCAAGTGATCACCGATTTTGAAACATTATGTATGAACAGGAAATCGTGGATTTAAAGCCAAAAATGTAAAAACATTCTTGCTAGGGAGTGTATTTTAGGATAGGTCTCGATTACATGGGYCCATCAAAAGTACTAGACTCAATTTGAACTTCTAAGCTTTTCGGAACCGTAAAATGTTAGAGCTTGATTTGAGATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9377</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>417751</contig_pos>
        <strand>+</strand>
        <context>TTTTTTGACT[C/T]YTTTTGATGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGAGAGAGAAGATTCAAATACCGGTCAGTTGAAACATGATTTTTTGACT</left_flank>
        <right_flank>TTTTTGATGTAACGGAAGATTTATTAACGAATAATTTGCATTCTGTAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACATTTGAACTGTAATATGTATTTGAAAGTTATAATGTTTGTTGAATATCAAAGAACAACAGATTTTTCGGTTTTATGATTCAAAGACGGTTTTGACAGAATATTAAAACAATTTGGTCAGTCGACAGTTTTGAAATATACTCCTCAGTGAATATAAGTCAGGCTCTCCCGATATTGCCTAGATCACTTGTTGAAATTCATACTTGAAACTTGAAACTGGAAAATTTTTCCTCAATTAATTTTTCAACTGAAAGGAACAAACTTTTTACCTATCACAAGTGTGTAGACTCACATAAAAAATTAAAGGAAATCGCAAAATTCCTTTTCAACAGTTTTTCGAGTTTCCGCTTTTTTATATGTGAATTCACATATTGTACTCACATTTTAGTTTTTTTTTTAATCGGAGTCTTCTAAATATTGAAGGCGTGTGTTTTGAACCCAGTATTATTAGAGAGAGAAGATTCAAATACCGGTCAGTTGAAACATGATTTTTTGACTTTTTTTGATGTAACGGAAGATTTATTAACGAATAATTTGCATTCTGTAACTGCAATACTTAATTAAAGTACCGTAAAACCTGTATTAGAGCTACCCATTAAATTATGGGTCCCTCTAATAAACGGGCCATTTTGAGAGGGTTTGAAGAAATACAAAGGCCCCTTCAAAATGTGTGTGTTCTTTTTTCAAAACATAAACTTCCATATGCAGTCTAAAATATTCTGGACATATCAAACTTTTACAGAAAATCGTTGAAGAACATTTGAAGTCTAAAAAATTTACCAATTTTTTATCATTGACAGATCTTTATGAATTTTCGAAAACTCAATAAAATTTTCGATGAAAAAGTTCGGAAAATGGCCAAAGAACTAAAACGGCTCACTCTAATTGGAGGGCTGCTGTGATAGAAGGGCTCTCCGAAAGTTCCTTAGTTTGAATAATAGAAACGTCGGCTCTTCTAAAACAGGTTTTATGGTATTTGACTGGTGTTTGAAATAAACG</canonical>
            <polymorphic>GACATTTGAACTGTAATATGTATTTGAAAGTTATAATGTTTGTTGAATATCAAAGAACAACAGATTTTTCGGTTTTATGATTCAAAGACGGTTTTGACAGAATATTAAAACAATTTGGTCAGTCGACAGTTTTGAAATATACTCCTCAGTGAATATAAGTCAGGCTCTCCCGATATTGCCTAGATCACTTGTTGAAATTCATACTTGAAACTTGAAACTGGAAAATTTTTCCTCAATTAATTTTTCAACTGAAAGGAACAAACTTTTTACCTATCACAAGTGTGTAGACTCACATAAAAAATTAAAGGAAATCGCAAAATTCCTTTTCAACAGTTTTTCGAGTTTCCGCTTTTTTATATGTGAATTCACATATTGTACTCACATTTTAGTTTTTTTTTTAATCGGAGTCTTCTAAATATTGAAGGCGTGTGTTTTGAACCCAGTATTATTAGAGAGAGAAGATTCAAATACCGGTCAGTTGAAACATGATTTTTTGACTYTTTTTGATGTAACGGAAGATTTATTAACGAATAATTTGCATTCTGTAACTGCAATACTTAATTAAAGTACCGTAAAACCTGTATTAGAGCTACCCATTAAATTATGGGTCCCTCTAATAAACGGGCCATTTTGAGAGGGTTTGAAGAAATACAAAGGCCCCTTCAAAATGTGTGTGTTCTTTTTTCAAAACATAAACTTCCATATGCAGTCTAAAATATTCTGGACATATCAAACTTTTACAGAAAATCGTTGAAGAACATTTGAAGTCTAAAAAATTTACCAATTTTTTATCATTGACAGATCTTTATGAATTTTCGAAAACTCAATAAAATTTTCGATGAAAAAGTTCGGAAAATGGCCAAAGAACTAAAACGGCTCACTCTAATTGGAGGGCTGCTGTGATAGAAGGGCTCTCCGAAAGTTCCTTAGTTTGAATAATAGAAACGTCGGCTCTTCTAAAACAGGTTTTATGGTATTTGACTGGTGTTTGAAATAAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAACCCAGTATTATTAGAGAGAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAGAACACACACATTTTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGAACCCAGTATTATTAGAGAGAGAAGATTCAAATACCGGTCAGTTGAAACATGATTTTTTGACTTTTTTTGATGTAACGGAAGATTTATTAACGAATAATTTGCATTCTGTAACTGCAATACTTAATTAAAGTACCGTAAAACCTGTATTAGAGCTACCCATTAAATTATGGGTCCCTCTAATAAACGGGCCATTTTGAGAGGGTTTGAAGAAATACAAAGGCCCCTTCAAAATGTGTGTGTTCTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGAACCCAGTATTATTAGAGAGAGAAGATTCAAATACCGGTCAGTTGAAACATGATTTTTTGACTYTTTTTGATGTAACGGAAGATTTATTAACGAATAATTTGCATTCTGTAACTGCAATACTTAATTAAAGTACCGTAAAACCTGTATTAGAGCTACCCATTAAATTATGGGTCCCTCTAATAAACGGGCCATTTTGAGAGGGTTTGAAGAAATACAAAGGCCCCTTCAAAATGTGTGTGTTCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9378</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>417752</contig_pos>
        <strand>+</strand>
        <context>TTTTTGACTY[C/T]TTTTGATGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAGAGAGAAGATTCAAATACCGGTCAGTTGAAACATGATTTTTTGACTT</left_flank>
        <right_flank>TTTTGATGTAACGGAAGATTTATTAACGAATAATTTGCATTCTGTAACTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATTTGAACTGTAATATGTATTTGAAAGTTATAATGTTTGTTGAATATCAAAGAACAACAGATTTTTCGGTTTTATGATTCAAAGACGGTTTTGACAGAATATTAAAACAATTTGGTCAGTCGACAGTTTTGAAATATACTCCTCAGTGAATATAAGTCAGGCTCTCCCGATATTGCCTAGATCACTTGTTGAAATTCATACTTGAAACTTGAAACTGGAAAATTTTTCCTCAATTAATTTTTCAACTGAAAGGAACAAACTTTTTACCTATCACAAGTGTGTAGACTCACATAAAAAATTAAAGGAAATCGCAAAATTCCTTTTCAACAGTTTTTCGAGTTTCCGCTTTTTTATATGTGAATTCACATATTGTACTCACATTTTAGTTTTTTTTTTAATCGGAGTCTTCTAAATATTGAAGGCGTGTGTTTTGAACCCAGTATTATTAGAGAGAGAAGATTCAAATACCGGTCAGTTGAAACATGATTTTTTGACTTTTTTTGATGTAACGGAAGATTTATTAACGAATAATTTGCATTCTGTAACTGCAATACTTAATTAAAGTACCGTAAAACCTGTATTAGAGCTACCCATTAAATTATGGGTCCCTCTAATAAACGGGCCATTTTGAGAGGGTTTGAAGAAATACAAAGGCCCCTTCAAAATGTGTGTGTTCTTTTTTCAAAACATAAACTTCCATATGCAGTCTAAAATATTCTGGACATATCAAACTTTTACAGAAAATCGTTGAAGAACATTTGAAGTCTAAAAAATTTACCAATTTTTTATCATTGACAGATCTTTATGAATTTTCGAAAACTCAATAAAATTTTCGATGAAAAAGTTCGGAAAATGGCCAAAGAACTAAAACGGCTCACTCTAATTGGAGGGCTGCTGTGATAGAAGGGCTCTCCGAAAGTTCCTTAGTTTGAATAATAGAAACGTCGGCTCTTCTAAAACAGGTTTTATGGTATTTGACTGGTGTTTGAAATAAACGT</canonical>
            <polymorphic>ACATTTGAACTGTAATATGTATTTGAAAGTTATAATGTTTGTTGAATATCAAAGAACAACAGATTTTTCGGTTTTATGATTCAAAGACGGTTTTGACAGAATATTAAAACAATTTGGTCAGTCGACAGTTTTGAAATATACTCCTCAGTGAATATAAGTCAGGCTCTCCCGATATTGCCTAGATCACTTGTTGAAATTCATACTTGAAACTTGAAACTGGAAAATTTTTCCTCAATTAATTTTTCAACTGAAAGGAACAAACTTTTTACCTATCACAAGTGTGTAGACTCACATAAAAAATTAAAGGAAATCGCAAAATTCCTTTTCAACAGTTTTTCGAGTTTCCGCTTTTTTATATGTGAATTCACATATTGTACTCACATTTTAGTTTTTTTTTTAATCGGAGTCTTCTAAATATTGAAGGCGTGTGTTTTGAACCCAGTATTATTAGAGAGAGAAGATTCAAATACCGGTCAGTTGAAACATGATTTTTTGACTTYTTTTGATGTAACGGAAGATTTATTAACGAATAATTTGCATTCTGTAACTGCAATACTTAATTAAAGTACCGTAAAACCTGTATTAGAGCTACCCATTAAATTATGGGTCCCTCTAATAAACGGGCCATTTTGAGAGGGTTTGAAGAAATACAAAGGCCCCTTCAAAATGTGTGTGTTCTTTTTTCAAAACATAAACTTCCATATGCAGTCTAAAATATTCTGGACATATCAAACTTTTACAGAAAATCGTTGAAGAACATTTGAAGTCTAAAAAATTTACCAATTTTTTATCATTGACAGATCTTTATGAATTTTCGAAAACTCAATAAAATTTTCGATGAAAAAGTTCGGAAAATGGCCAAAGAACTAAAACGGCTCACTCTAATTGGAGGGCTGCTGTGATAGAAGGGCTCTCCGAAAGTTCCTTAGTTTGAATAATAGAAACGTCGGCTCTTCTAAAACAGGTTTTATGGTATTTGACTGGTGTTTGAAATAAACGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAACCCAGTATTATTAGAGAGAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAGAACACACACATTTTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGAACCCAGTATTATTAGAGAGAGAAGATTCAAATACCGGTCAGTTGAAACATGATTTTTTGACTTTTTTTGATGTAACGGAAGATTTATTAACGAATAATTTGCATTCTGTAACTGCAATACTTAATTAAAGTACCGTAAAACCTGTATTAGAGCTACCCATTAAATTATGGGTCCCTCTAATAAACGGGCCATTTTGAGAGGGTTTGAAGAAATACAAAGGCCCCTTCAAAATGTGTGTGTTCTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGAACCCAGTATTATTAGAGAGAGAAGATTCAAATACCGGTCAGTTGAAACATGATTTTTTGACTTYTTTTGATGTAACGGAAGATTTATTAACGAATAATTTGCATTCTGTAACTGCAATACTTAATTAAAGTACCGTAAAACCTGTATTAGAGCTACCCATTAAATTATGGGTCCCTCTAATAAACGGGCCATTTTGAGAGGGTTTGAAGAAATACAAAGGCCCCTTCAAAATGTGTGTGTTCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9379</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>418869</contig_pos>
        <strand>+</strand>
        <context>ATGCCGAATT[A/G]ATTTTTATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGTTGTTTATGAGACATTGATTTATTGCTGGAAAAATTCATGCCGAATT</left_flank>
        <right_flank>ATTTTTATGATTCCGTTCTAGACATTTTGCAAAGACTTGAAAGTACAGTA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTATTTTTACCTTTTACAGAATTACTCAGTTGCAAAAATAAGTTTCCCTCTCTTCCCATTCCCTCCAAACCGTTTATTCCGCGAAAAAACCCTCAACCTACATGTCAAAACTACCATCCATCTTTCCATCTTTCTCTCTTTCTTCCACCACTTTTCTACCTCCAAACTGTCCTCAATTTTTATGTATTTCATCGTTTTTCGCCCCCCCCCCCCTACTTCTTTTTTTCGTGTTGTATTTCTCCCTCCGTATTTGGGTATAAAATGCCGCCCGTTTTTCTCTCCAAATACACACATACAATGATATTTGCGGGGTCCTGGTCTGCCGACTACGCCTCGAAATGCAAACACCTTTCATTCGTTTTTCCCTTTTTATACTGGTTACGGGACGGTGTAGTAGGAAAAAGAGAGGAATGGTTGTGTTTATGCAGGTGTATTTATATGATTCATGTTGTTTATGAGACATTGATTTATTGCTGGAAAAATTCATGCCGAATTAATTTTTATGATTCCGTTCTAGACATTTTGCAAAGACTTGAAAGTACAGTATGCCAATAAGCTATTAAAGCAGTCTTATCTTCCAAAAAAGACTTACACCATGACCATCAACTTTGAACCTATGTATCTCATTTCCTGTAAAAGATATCAAAAATTGGTCAATTGATAAATTGTTTATCATAATATCACAAACATTTTATCAATTGACACATTTTTGATATCTTTCATAGAAAGCGAGATAATCTAGCTCAAAGTTGATAGACAGGTGCTACTCAAATGGAGGTTTGATGGTAATTCTTGAAACATTTATTATTTAATTATTTTTTTTCAGGACAACTTTCGTACAAGATTTTTTGTGCTAAAACTATCCTATCTCAAATTTTGGTTAAGCTTCTATAGATAAAAACACCTTAATAGAAGCATCCTATACTTGCACTTTGAGCTCAATTATCTCAATTTCTAAAAGAGATGCCTAAAATGTGTCAACTAATAAAATACTTT</canonical>
            <polymorphic>AAATTTATTTTTACCTTTTACAGAATTACTCAGTTGCAAAAATAAGTTTCCCTCTCTTCCCATTCCCTCCAAACCGTTTATTCCGCGAAAAAACCCTCAACCTACATGTCAAAACTACCATCCATCTTTCCATCTTTCTCTCTTTCTTCCACCACTTTTCTACCTCCAAACTGTCCTCAATTTTTATGTATTTCATCGTTTTTCGCCCCCCCCCCCCTACTTCTTTTTTTCGTGTTGTATTTCTCCCTCCGTATTTGGGTATAAAATGCCGCCCGTTTTTCTCTCCAAATACACACATACAATGATATTTGCGGGGTCCTGGTCTGCCGACTACGCCTCGAAATGCAAACACCTTTCATTCGTTTTTCCCTTTTTATACTGGTTACGGGACGGTGTAGTAGGAAAAAGAGAGGAATGGTTGTGTTTATGCAGGTGTATTTATATGATTCATGTTGTTTATGAGACATTGATTTATTGCTGGAAAAATTCATGCCGAATTRATTTTTATGATTCCGTTCTAGACATTTTGCAAAGACTTGAAAGTACAGTATGCCAATAAGCTATTAAAGCAGTCTTATCTTCCAAAAAAGACTTACACCATGACCATCAACTTTGAACCTATGTATCTCATTTCCTGTAAAAGATATCAAAAATTGGTCAATTGATAAATTGTTTATCATAATATCACAAACATTTTATCAATTGACACATTTTTGATATCTTTCATAGAAAGCGAGATAATCTAGCTCAAAGTTGATAGACAGGTGCTACTCAAATGGAGGTTTGATGGTAATTCTTGAAACATTTATTATTTAATTATTTTTTTTCAGGACAACTTTCGTACAAGATTTTTTGTGCTAAAACTATCCTATCTCAAATTTTGGTTAAGCTTCTATAGATAAAAACACCTTAATAGAAGCATCCTATACTTGCACTTTGAGCTCAATTATCTCAATTTCTAAAAGAGATGCCTAAAATGTGTCAACTAATAAAATACTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>498 249 90 72 66 25</canonical_bands>
                <polymorphic_bands>564 249 90 72 25</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>306 155 152 91 68 62 47 33 23 22 11 9 8 8 4 1</canonical_bands>
                <polymorphic_bands>306 156 155 91 68 62 47 33 23 22 11 9 8 8 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACACCTTTCATTCGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGGAAGATAAGACTGCTTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AAACACCTTTCATTCGTTTTTCCCTTTTTATACTGGTTACGGGACGGTGTAGTAGGAAAAAGAGAGGAATGGTTGTGTTTATGCAGGTGTATTTATATGATTCATGTTGTTTATGAGACATTGATTTATTGCTGGAAAAATTCATGCCGAATTAATTTTTATGATTCCGTTCTAGACATTTTGCAAAGACTTGAAAGTACAGTATGCCAATAAGCTATTAAAGCAGTCTTATCTTCCAA</canonical_amplicon>
		<polymorphic_amplicon>AAACACCTTTCATTCGTTTTTCCCTTTTTATACTGGTTACGGGACGGTGTAGTAGGAAAAAGAGAGGAATGGTTGTGTTTATGCAGGTGTATTTATATGATTCATGTTGTTTATGAGACATTGATTTATTGCTGGAAAAATTCATGCCGAATTRATTTTTATGATTCCGTTCTAGACATTTTGCAAAGACTTGAAAGTACAGTATGCCAATAAGCTATTAAAGCAGTCTTATCTTCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9380</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>418955</contig_pos>
        <strand>+</strand>
        <context>TATCTTCCAA[A/T]AAAGACTTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTGAAAGTACAGTATGCCAATAAGCTATTAAAGCAGTCTTATCTTCCAA</left_flank>
        <right_flank>AAAGACTTACACCATGACCATCAACTTTGAACCTATGTATCTCATTTCCT</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAAACCCTCAACCTACATGTCAAAACTACCATCCATCTTTCCATCTTTCTCTCTTTCTTCCACCACTTTTCTACCTCCAAACTGTCCTCAATTTTTATGTATTTCATCGTTTTTCGCCCCCCCCCCCCTACTTCTTTTTTTCGTGTTGTATTTCTCCCTCCGTATTTGGGTATAAAATGCCGCCCGTTTTTCTCTCCAAATACACACATACAATGATATTTGCGGGGTCCTGGTCTGCCGACTACGCCTCGAAATGCAAACACCTTTCATTCGTTTTTCCCTTTTTATACTGGTTACGGGACGGTGTAGTAGGAAAAAGAGAGGAATGGTTGTGTTTATGCAGGTGTATTTATATGATTCATGTTGTTTATGAGACATTGATTTATTGCTGGAAAAATTCATGCCGAATTAATTTTTATGATTCCGTTCTAGACATTTTGCAAAGACTTGAAAGTACAGTATGCCAATAAGCTATTAAAGCAGTCTTATCTTCCAAAAAAGACTTACACCATGACCATCAACTTTGAACCTATGTATCTCATTTCCTGTAAAAGATATCAAAAATTGGTCAATTGATAAATTGTTTATCATAATATCACAAACATTTTATCAATTGACACATTTTTGATATCTTTCATAGAAAGCGAGATAATCTAGCTCAAAGTTGATAGACAGGTGCTACTCAAATGGAGGTTTGATGGTAATTCTTGAAACATTTATTATTTAATTATTTTTTTTCAGGACAACTTTCGTACAAGATTTTTTGTGCTAAAACTATCCTATCTCAAATTTTGGTTAAGCTTCTATAGATAAAAACACCTTAATAGAAGCATCCTATACTTGCACTTTGAGCTCAATTATCTCAATTTCTAAAAGAGATGCCTAAAATGTGTCAACTAATAAAATACTTTTCATGATAACACTAGCATTTTATTAGTGGACACATTTTTGATATCTCTTATGCGAATTGAGATAATAGAGTTCGAAGTGTTACGGT</canonical>
            <polymorphic>GAAAAAACCCTCAACCTACATGTCAAAACTACCATCCATCTTTCCATCTTTCTCTCTTTCTTCCACCACTTTTCTACCTCCAAACTGTCCTCAATTTTTATGTATTTCATCGTTTTTCGCCCCCCCCCCCCTACTTCTTTTTTTCGTGTTGTATTTCTCCCTCCGTATTTGGGTATAAAATGCCGCCCGTTTTTCTCTCCAAATACACACATACAATGATATTTGCGGGGTCCTGGTCTGCCGACTACGCCTCGAAATGCAAACACCTTTCATTCGTTTTTCCCTTTTTATACTGGTTACGGGACGGTGTAGTAGGAAAAAGAGAGGAATGGTTGTGTTTATGCAGGTGTATTTATATGATTCATGTTGTTTATGAGACATTGATTTATTGCTGGAAAAATTCATGCCGAATTAATTTTTATGATTCCGTTCTAGACATTTTGCAAAGACTTGAAAGTACAGTATGCCAATAAGCTATTAAAGCAGTCTTATCTTCCAAWAAAGACTTACACCATGACCATCAACTTTGAACCTATGTATCTCATTTCCTGTAAAAGATATCAAAAATTGGTCAATTGATAAATTGTTTATCATAATATCACAAACATTTTATCAATTGACACATTTTTGATATCTTTCATAGAAAGCGAGATAATCTAGCTCAAAGTTGATAGACAGGTGCTACTCAAATGGAGGTTTGATGGTAATTCTTGAAACATTTATTATTTAATTATTTTTTTTCAGGACAACTTTCGTACAAGATTTTTTGTGCTAAAACTATCCTATCTCAAATTTTGGTTAAGCTTCTATAGATAAAAACACCTTAATAGAAGCATCCTATACTTGCACTTTGAGCTCAATTATCTCAATTTCTAAAAGAGATGCCTAAAATGTGTCAACTAATAAAATACTTTTCATGATAACACTAGCATTTTATTAGTGGACACATTTTTGATATCTCTTATGCGAATTGAGATAATAGAGTTCGAAGTGTTACGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAGACTTGAAAGTACAGTATGC</pcr_primer_p1>
		<pcr_primer_p2>AAATCTTGTACGAAAGTTGTCCT</pcr_primer_p2>
		<pcr_amplicon_size>322</pcr_amplicon_size>
		<canonical_amplicon>CAAAGACTTGAAAGTACAGTATGCCAATAAGCTATTAAAGCAGTCTTATCTTCCAAAAAAGACTTACACCATGACCATCAACTTTGAACCTATGTATCTCATTTCCTGTAAAAGATATCAAAAATTGGTCAATTGATAAATTGTTTATCATAATATCACAAACATTTTATCAATTGACACATTTTTGATATCTTTCATAGAAAGCGAGATAATCTAGCTCAAAGTTGATAGACAGGTGCTACTCAAATGGAGGTTTGATGGTAATTCTTGAAACATTTATTATTTAATTATTTTTTTTCAGGACAACTTTCGTACAAGATTT</canonical_amplicon>
		<polymorphic_amplicon>CAAAGACTTGAAAGTACAGTATGCCAATAAGCTATTAAAGCAGTCTTATCTTCCAAWAAAGACTTACACCATGACCATCAACTTTGAACCTATGTATCTCATTTCCTGTAAAAGATATCAAAAATTGGTCAATTGATAAATTGTTTATCATAATATCACAAACATTTTATCAATTGACACATTTTTGATATCTTTCATAGAAAGCGAGATAATCTAGCTCAAAGTTGATAGACAGGTGCTACTCAAATGGAGGTTTGATGGTAATTCTTGAAACATTTATTATTTAATTATTTTTTTTCAGGACAACTTTCGTACAAGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9381</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>420483</contig_pos>
        <strand>+</strand>
        <context>AACAATTATT[A/G]ATTAGGtrtt</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATT</left_flank>
        <right_flank>ATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTTTTCATTGTTAACTCAACTCACAAGGTTTCGGCTCGAAAACTGACGAAGTTAATCTGTTTTTCACTTGTACTTTTTTTCCGTTAAAGCAACCACGTTTGAGTTTCCCAAATCCAAATACTGTAGTAATTTCGTATAACTAGGAAACCCGATTTACAGGGTTTTGAAAAACCAATTTTAACTGTTTCATCGAATACGTGGATGAGTTCGGAATGTTAAACGAAACTACTGAATCATCATGATTCTTCGAAATTATGTTTCTAAATTTAGCGAATCAATTTTGAAAAACACTAACTAGTAAGATCCTCATTTTCAATGTTTGCTAACAATTCAAACCATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATAAAATGAACATGTGTTTTCAAAATTTGATAAGTTGGATGTATTCTCAATTTTCGACAATTCCCATTTCCAACACCTGATGGCATGAGTTTTATTCTTCGT</canonical>
            <polymorphic>CGTTTTCATTGTTAACTCAACTCACAAGGTTTCGGCTCGAAAACTGACGAAGTTAATCTGTTTTTCACTTGTACTTTTTTTCCGTTAAAGCAACCACGTTTGAGTTTCCCAAATCCAAATACTGTAGTAATTTCGTATAACTAGGAAACCCGATTTACAGGGTTTTGAAAAACCAATTTTAACTGTTTCATCGAATACGTGGATGAGTTCGGAATGTTAAACGAAACTACTGAATCATCATGATTCTTCGAAATTATGTTTCTAAATTTAGCGAATCAATTTTGAAAAACACTAACTAGTAAGATCCTCATTTTCAATGTTTGCTAACAATTCAAACCATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTRATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATAAAATGAACATGTGTTTTCAAAATTTGATAAGTTGGATGTATTCTCAATTTTCGACAATTCCCATTTCCAACACCTGATGGCATGAGTTTTATTCTTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGTTAATGGTTTACAAACACC</pcr_primer_p1>
		<pcr_primer_p2>AATTTCGGTATCATAAACTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>430</pcr_amplicon_size>
		<canonical_amplicon>AAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATT</canonical_amplicon>
		<polymorphic_amplicon>AAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTRATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9382</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>420470</contig_pos>
        <strand>+</strand>
        <context>TTTTTCAAAC[A/T]TTAACAATTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAAC</left_flank>
        <right_flank>TTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACACTCGTTCACGTTTTCATTGTTAACTCAACTCACAAGGTTTCGGCTCGAAAACTGACGAAGTTAATCTGTTTTTCACTTGTACTTTTTTTCCGTTAAAGCAACCACGTTTGAGTTTCCCAAATCCAAATACTGTAGTAATTTCGTATAACTAGGAAACCCGATTTACAGGGTTTTGAAAAACCAATTTTAACTGTTTCATCGAATACGTGGATGAGTTCGGAATGTTAAACGAAACTACTGAATCATCATGATTCTTCGAAATTATGTTTCTAAATTTAGCGAATCAATTTTGAAAAACACTAACTAGTAAGATCCTCATTTTCAATGTTTGCTAACAATTCAAACCATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATAAAATGAACATGTGTTTTCAAAATTTGATAAGTTGGATGTATTCTCAATTTTCGACAATTCCCATTTCCAACACCTGATGGCATGAG</canonical>
            <polymorphic>CAACACTCGTTCACGTTTTCATTGTTAACTCAACTCACAAGGTTTCGGCTCGAAAACTGACGAAGTTAATCTGTTTTTCACTTGTACTTTTTTTCCGTTAAAGCAACCACGTTTGAGTTTCCCAAATCCAAATACTGTAGTAATTTCGTATAACTAGGAAACCCGATTTACAGGGTTTTGAAAAACCAATTTTAACTGTTTCATCGAATACGTGGATGAGTTCGGAATGTTAAACGAAACTACTGAATCATCATGATTCTTCGAAATTATGTTTCTAAATTTAGCGAATCAATTTTGAAAAACACTAACTAGTAAGATCCTCATTTTCAATGTTTGCTAACAATTCAAACCATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACWTTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATAAAATGAACATGTGTTTTCAAAATTTGATAAGTTGGATGTATTCTCAATTTTCGACAATTCCCATTTCCAACACCTGATGGCATGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCATATGTAGATCAAGGTATAAA</pcr_primer_p1>
		<pcr_primer_p2>AATTTCGGTATCATAAACTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>480</pcr_amplicon_size>
		<canonical_amplicon>GCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATT</canonical_amplicon>
		<polymorphic_amplicon>GCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACWTTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9383</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>420412</contig_pos>
        <strand>+</strand>
        <context>AAACTTGRGA[A/T]GAAATATTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGA</left_flank>
        <right_flank>GAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTT</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCATGCGGCGCTAGGTTCAATATTTCCGTAAATATACAGTCAAAAGTATTCAAAACACAACACTCGTTCACGTTTTCATTGTTAACTCAACTCACAAGGTTTCGGCTCGAAAACTGACGAAGTTAATCTGTTTTTCACTTGTACTTTTTTTCCGTTAAAGCAACCACGTTTGAGTTTCCCAAATCCAAATACTGTAGTAATTTCGTATAACTAGGAAACCCGATTTACAGGGTTTTGAAAAACCAATTTTAACTGTTTCATCGAATACGTGGATGAGTTCGGAATGTTAAACGAAACTACTGAATCATCATGATTCTTCGAAATTATGTTTCTAAATTTAGCGAATCAATTTTGAAAAACACTAACTAGTAAGATCCTCATTTTCAATGTTTGCTAACAATTCAAACCATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATAAAATGAACATGTGTTTTCAAAATTTGAT</canonical>
            <polymorphic>GCCATGCGGCGCTAGGTTCAATATTTCCGTAAATATACAGTCAAAAGTATTCAAAACACAACACTCGTTCACGTTTTCATTGTTAACTCAACTCACAAGGTTTCGGCTCGAAAACTGACGAAGTTAATCTGTTTTTCACTTGTACTTTTTTTCCGTTAAAGCAACCACGTTTGAGTTTCCCAAATCCAAATACTGTAGTAATTTCGTATAACTAGGAAACCCGATTTACAGGGTTTTGAAAAACCAATTTTAACTGTTTCATCGAATACGTGGATGAGTTCGGAATGTTAAACGAAACTACTGAATCATCATGATTCTTCGAAATTATGTTTCTAAATTTAGCGAATCAATTTTGAAAAACACTAACTAGTAAGATCCTCATTTTCAATGTTTGCTAACAATTCAAACCATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGAWGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATAAAATGAACATGTGTTTTCAAAATTTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATGATTCTTCGAAATTATGTT</pcr_primer_p1>
		<pcr_primer_p2>GTTTGAAAAATTTTGAGGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCATGATTCTTCGAAATTATGTTTCTAAATTTAGCGAATCAATTTTGAAAAACACTAACTAGTAAGATCCTCATTTTCAATGTTTGCTAACAATTCAAACCATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAAC</canonical_amplicon>
		<polymorphic_amplicon>TCATGATTCTTCGAAATTATGTTTCTAAATTTAGCGAATCAATTTTGAAAAACACTAACTAGTAAGATCCTCATTTTCAATGTTTGCTAACAATTCAAACCATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGAWGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9384</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>420409</contig_pos>
        <strand>+</strand>
        <context>TATAAACTTG[A/G]GAWGAAATAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTG</left_flank>
        <right_flank>GATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAA</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCGCCATGCGGCGCTAGGTTCAATATTTCCGTAAATATACAGTCAAAAGTATTCAAAACACAACACTCGTTCACGTTTTCATTGTTAACTCAACTCACAAGGTTTCGGCTCGAAAACTGACGAAGTTAATCTGTTTTTCACTTGTACTTTTTTTCCGTTAAAGCAACCACGTTTGAGTTTCCCAAATCCAAATACTGTAGTAATTTCGTATAACTAGGAAACCCGATTTACAGGGTTTTGAAAAACCAATTTTAACTGTTTCATCGAATACGTGGATGAGTTCGGAATGTTAAACGAAACTACTGAATCATCATGATTCTTCGAAATTATGTTTCTAAATTTAGCGAATCAATTTTGAAAAACACTAACTAGTAAGATCCTCATTTTCAATGTTTGCTAACAATTCAAACCATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATAAAATGAACATGTGTTTTCAAAATTT</canonical>
            <polymorphic>GGCGCCATGCGGCGCTAGGTTCAATATTTCCGTAAATATACAGTCAAAAGTATTCAAAACACAACACTCGTTCACGTTTTCATTGTTAACTCAACTCACAAGGTTTCGGCTCGAAAACTGACGAAGTTAATCTGTTTTTCACTTGTACTTTTTTTCCGTTAAAGCAACCACGTTTGAGTTTCCCAAATCCAAATACTGTAGTAATTTCGTATAACTAGGAAACCCGATTTACAGGGTTTTGAAAAACCAATTTTAACTGTTTCATCGAATACGTGGATGAGTTCGGAATGTTAAACGAAACTACTGAATCATCATGATTCTTCGAAATTATGTTTCTAAATTTAGCGAATCAATTTTGAAAAACACTAACTAGTAAGATCCTCATTTTCAATGTTTGCTAACAATTCAAACCATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGRGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATAAAATGAACATGTGTTTTCAAAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATGATTCTTCGAAATTATGTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAAATTTTGAGGTGTTTGTAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TCATGATTCTTCGAAATTATGTTTCTAAATTTAGCGAATCAATTTTGAAAAACACTAACTAGTAAGATCCTCATTTTCAATGTTTGCTAACAATTCAAACCATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTC</canonical_amplicon>
		<polymorphic_amplicon>TCATGATTCTTCGAAATTATGTTTCTAAATTTAGCGAATCAATTTTGAAAAACACTAACTAGTAAGATCCTCATTTTCAATGTTTGCTAACAATTCAAACCATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGRGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9385</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>420371</contig_pos>
        <strand>+</strand>
        <context>CCTGATTTTT[A/G]CTTTGTCGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTT</left_flank>
        <right_flank>CTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTA</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTTATCTTAAATTGTAGTTTATTAGCCTGACTATGGGCGCCATGCGGCGCTAGGTTCAATATTTCCGTAAATATACAGTCAAAAGTATTCAAAACACAACACTCGTTCACGTTTTCATTGTTAACTCAACTCACAAGGTTTCGGCTCGAAAACTGACGAAGTTAATCTGTTTTTCACTTGTACTTTTTTTCCGTTAAAGCAACCACGTTTGAGTTTCCCAAATCCAAATACTGTAGTAATTTCGTATAACTAGGAAACCCGATTTACAGGGTTTTGAAAAACCAATTTTAACTGTTTCATCGAATACGTGGATGAGTTCGGAATGTTAAACGAAACTACTGAATCATCATGATTCTTCGAAATTATGTTTCTAAATTTAGCGAATCAATTTTGAAAAACACTAACTAGTAAGATCCTCATTTTCAATGTTTGCTAACAATTCAAACCATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTTT</canonical>
            <polymorphic>GAATTTATCTTAAATTGTAGTTTATTAGCCTGACTATGGGCGCCATGCGGCGCTAGGTTCAATATTTCCGTAAATATACAGTCAAAAGTATTCAAAACACAACACTCGTTCACGTTTTCATTGTTAACTCAACTCACAAGGTTTCGGCTCGAAAACTGACGAAGTTAATCTGTTTTTCACTTGTACTTTTTTTCCGTTAAAGCAACCACGTTTGAGTTTCCCAAATCCAAATACTGTAGTAATTTCGTATAACTAGGAAACCCGATTTACAGGGTTTTGAAAAACCAATTTTAACTGTTTCATCGAATACGTGGATGAGTTCGGAATGTTAAACGAAACTACTGAATCATCATGATTCTTCGAAATTATGTTTCTAAATTTAGCGAATCAATTTTGAAAAACACTAACTAGTAAGATCCTCATTTTCAATGTTTGCTAACAATTCAAACCATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTRCTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATGATTCTTCGAAATTATGTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAAATTTTGAGGTGTTTGTAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TCATGATTCTTCGAAATTATGTTTCTAAATTTAGCGAATCAATTTTGAAAAACACTAACTAGTAAGATCCTCATTTTCAATGTTTGCTAACAATTCAAACCATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTC</canonical_amplicon>
		<polymorphic_amplicon>TCATGATTCTTCGAAATTATGTTTCTAAATTTAGCGAATCAATTTTGAAAAACACTAACTAGTAAGATCCTCATTTTCAATGTTTGCTAACAATTCAAACCATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTRCTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9388</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>420910</contig_pos>
        <strand>+</strand>
        <context>TTCAAAATTT[C/G]ATAAGTTGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGATTAATGTTTCAGTTAGAGGATAAAATGAACATGTGTTTTCAAAATTT</left_flank>
        <right_flank>ATAAGTTGGATGTATTCTCAATTTTCGACAATTCCCATTTCCAACACCTG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATAAAATGAACATGTGTTTTCAAAATTTGATAAGTTGGATGTATTCTCAATTTTCGACAATTCCCATTTCCAACACCTGATGGCATGAGTTTTATTCTTCGTTGGTCTTTCTTTCTCTCCGTTTTCTTCTCAATTCAAAAAAGATATATTACCATTATTCTAGACTGTTTCTTCTTGTCGTTTCTCCCCCAAAATCCGAAATGTCCCTTTGTCTCTTTCTTTTTTCCCGGGGCATTTCGGCCTCTCTCTCCTGGTTTCTGTCTCCGGAGGAGGACGGAGCGACGGTTCGATTCGATTGCTAATGCGAAAATTACCAGTCTCTCCTCTCCTCTTCTTGAAATGAATATGAAGAAGAAGTGTCTTCTTCGGAACAATCTTTCATTTCAAAGTGAGGGAAAAATAAGAAAAAGAGAGAGGGAGAGAGAGAGAGAGGGAAATGTCTCTGATGTCCTCGAAGACAACAGGAGAGGATATACGGAGGTTGGTTAGAATAAGAATCGTCTAGAACAATTTAGAAGTCGTTTTTTTT</canonical>
            <polymorphic>ATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATAAAATGAACATGTGTTTTCAAAATTTSATAAGTTGGATGTATTCTCAATTTTCGACAATTCCCATTTCCAACACCTGATGGCATGAGTTTTATTCTTCGTTGGTCTTTCTTTCTCTCCGTTTTCTTCTCAATTCAAAAAAGATATATTACCATTATTCTAGACTGTTTCTTCTTGTCGTTTCTCCCCCAAAATCCGAAATGTCCCTTTGTCTCTTTCTTTTTTCCCGGGGCATTTCGGCCTCTCTCTCCTGGTTTCTGTCTCCGGAGGAGGACGGAGCGACGGTTCGATTCGATTGCTAATGCGAAAATTACCAGTCTCTCCTCTCCTCTTCTTGAAATGAATATGAAGAAGAAGTGTCTTCTTCGGAACAATCTTTCATTTCAAAGTGAGGGAAAAATAAGAAAAAGAGAGAGGGAGAGAGAGAGAGAGGGAAATGTCTCTGATGTCCTCGAAGACAACAGGAGAGGATATACGGAGGTTGGTTAGAATAAGAATCGTCTAGAACAATTTAGAAGTCGTTTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAAATTGATTAATGTTTCAGTTA</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAAGAGACAAAGGGACAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGAAATTGATTAATGTTTCAGTTAGAGGATAAAATGAACATGTGTTTTCAAAATTTGATAAGTTGGATGTATTCTCAATTTTCGACAATTCCCATTTCCAACACCTGATGGCATGAGTTTTATTCTTCGTTGGTCTTTCTTTCTCTCCGTTTTCTTCTCAATTCAAAAAAGATATATTACCATTATTCTAGACTGTTTCTTCTTGTCGTTTCTCCCCCAAAATCCGAAATGTCCCTTTGTCTCTTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>CGAAATTGATTAATGTTTCAGTTAGAGGATAAAATGAACATGTGTTTTCAAAATTTSATAAGTTGGATGTATTCTCAATTTTCGACAATTCCCATTTCCAACACCTGATGGCATGAGTTTTATTCTTCGTTGGTCTTTCTTTCTCTCCGTTTTCTTCTCAATTCAAAAAAGATATATTACCATTATTCTAGACTGTTTCTTCTTGTCGTTTCTCCCCCAAAATCCGAAATGTCCCTTTGTCTCTTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9389</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>420834</contig_pos>
        <strand>+</strand>
        <context>AAATTTTATG[A/G]TTATGAAAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATG</left_flank>
        <right_flank>TTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATAAAATGAACATGTGTTTTCAAAATTTGATAAGTTGGATGTATTCTCAATTTTCGACAATTCCCATTTCCAACACCTGATGGCATGAGTTTTATTCTTCGTTGGTCTTTCTTTCTCTCCGTTTTCTTCTCAATTCAAAAAAGATATATTACCATTATTCTAGACTGTTTCTTCTTGTCGTTTCTCCCCCAAAATCCGAAATGTCCCTTTGTCTCTTTCTTTTTTCCCGGGGCATTTCGGCCTCTCTCTCCTGGTTTCTGTCTCCGGAGGAGGACGGAGCGACGGTTCGATTCGATTGCTAATGCGAAAATTACCAGTCTCTCCTCTCCTCTTCTTGAAATGAATATGAAGAAGAAGTGTCTTCTTCGGAACAATCTTTCATTTCAAAGTGAGGGAAAAATAAGAAAAAGAGAGAGGGAGAGAGAGAGAGAGGGAAATGTCTCTGATGTCCTC</canonical>
            <polymorphic>AGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGRTTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATAAAATGAACATGTGTTTTCAAAATTTGATAAGTTGGATGTATTCTCAATTTTCGACAATTCCCATTTCCAACACCTGATGGCATGAGTTTTATTCTTCGTTGGTCTTTCTTTCTCTCCGTTTTCTTCTCAATTCAAAAAAGATATATTACCATTATTCTAGACTGTTTCTTCTTGTCGTTTCTCCCCCAAAATCCGAAATGTCCCTTTGTCTCTTTCTTTTTTCCCGGGGCATTTCGGCCTCTCTCTCCTGGTTTCTGTCTCCGGAGGAGGACGGAGCGACGGTTCGATTCGATTGCTAATGCGAAAATTACCAGTCTCTCCTCTCCTCTTCTTGAAATGAATATGAAGAAGAAGTGTCTTCTTCGGAACAATCTTTCATTTCAAAGTGAGGGAAAAATAAGAAAAAGAGAGAGGGAGAGAGAGAGAGAGGGAAATGTCTCTGATGTCCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACACCTCAAAATTTTTCAAAC</pcr_primer_p1>
		<pcr_primer_p2>TCATTTTATCCTCTAACTGAAACA</pcr_primer_p2>
		<pcr_amplicon_size>443</pcr_amplicon_size>
		<canonical_amplicon>AACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATAAAATGA</canonical_amplicon>
		<polymorphic_amplicon>AACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGRTTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATAAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9391</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>420820</contig_pos>
        <strand>+</strand>
        <context>RGAGTTATTT[A/T]AAAAAATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTT</left_flank>
        <right_flank>AAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATAAAATGAACATGTGTTTTCAAAATTTGATAAGTTGGATGTATTCTCAATTTTCGACAATTCCCATTTCCAACACCTGATGGCATGAGTTTTATTCTTCGTTGGTCTTTCTTTCTCTCCGTTTTCTTCTCAATTCAAAAAAGATATATTACCATTATTCTAGACTGTTTCTTCTTGTCGTTTCTCCCCCAAAATCCGAAATGTCCCTTTGTCTCTTTCTTTTTTCCCGGGGCATTTCGGCCTCTCTCTCCTGGTTTCTGTCTCCGGAGGAGGACGGAGCGACGGTTCGATTCGATTGCTAATGCGAAAATTACCAGTCTCTCCTCTCCTCTTCTTGAAATGAATATGAAGAAGAAGTGTCTTCTTCGGAACAATCTTTCATTTCAAAGTGAGGGAAAAATAAGAAAAAGAGAGAGGGAGAGAGAGAGAGAGGGAAATG</canonical>
            <polymorphic>CATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTWAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATAAAATGAACATGTGTTTTCAAAATTTGATAAGTTGGATGTATTCTCAATTTTCGACAATTCCCATTTCCAACACCTGATGGCATGAGTTTTATTCTTCGTTGGTCTTTCTTTCTCTCCGTTTTCTTCTCAATTCAAAAAAGATATATTACCATTATTCTAGACTGTTTCTTCTTGTCGTTTCTCCCCCAAAATCCGAAATGTCCCTTTGTCTCTTTCTTTTTTCCCGGGGCATTTCGGCCTCTCTCTCCTGGTTTCTGTCTCCGGAGGAGGACGGAGCGACGGTTCGATTCGATTGCTAATGCGAAAATTACCAGTCTCTCCTCTCCTCTTCTTGAAATGAATATGAAGAAGAAGTGTCTTCTTCGGAACAATCTTTCATTTCAAAGTGAGGGAAAAATAAGAAAAAGAGAGAGGGAGAGAGAGAGAGAGGGAAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 318 182</canonical_bands>
                <polymorphic_bands>818 182</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>457 182 108 99 44 36 33 30 7 4</canonical_bands>
                <polymorphic_bands>457 182 143 108 36 33 30 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACACCTCAAAATTTTTCAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTATCCTCTAACTGAAACATTAATCA</pcr_primer_p2>
		<pcr_amplicon_size>438</pcr_amplicon_size>
		<canonical_amplicon>AACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATAA</canonical_amplicon>
		<polymorphic_amplicon>AACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTWAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9392</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>420810</contig_pos>
        <strand>+</strand>
        <context>ttttGAAWCC[A/G]GAGTTATTTW</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACC</left_flank>
        <right_flank>GAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATTCAAACCATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATAAAATGAACATGTGTTTTCAAAATTTGATAAGTTGGATGTATTCTCAATTTTCGACAATTCCCATTTCCAACACCTGATGGCATGAGTTTTATTCTTCGTTGGTCTTTCTTTCTCTCCGTTTTCTTCTCAATTCAAAAAAGATATATTACCATTATTCTAGACTGTTTCTTCTTGTCGTTTCTCCCCCAAAATCCGAAATGTCCCTTTGTCTCTTTCTTTTTTCCCGGGGCATTTCGGCCTCTCTCTCCTGGTTTCTGTCTCCGGAGGAGGACGGAGCGACGGTTCGATTCGATTGCTAATGCGAAAATTACCAGTCTCTCCTCTCCTCTTCTTGAAATGAATATGAAGAAGAAGTGTCTTCTTCGGAACAATCTTTCATTTCAAAGTGAGGGAAAAATAAGAAAAAGAGAGAGGGAGAGAGAGAGA</canonical>
            <polymorphic>CAATTCAAACCATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCRGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATAAAATGAACATGTGTTTTCAAAATTTGATAAGTTGGATGTATTCTCAATTTTCGACAATTCCCATTTCCAACACCTGATGGCATGAGTTTTATTCTTCGTTGGTCTTTCTTTCTCTCCGTTTTCTTCTCAATTCAAAAAAGATATATTACCATTATTCTAGACTGTTTCTTCTTGTCGTTTCTCCCCCAAAATCCGAAATGTCCCTTTGTCTCTTTCTTTTTTCCCGGGGCATTTCGGCCTCTCTCTCCTGGTTTCTGTCTCCGGAGGAGGACGGAGCGACGGTTCGATTCGATTGCTAATGCGAAAATTACCAGTCTCTCCTCTCCTCTTCTTGAAATGAATATGAAGAAGAAGTGTCTTCTTCGGAACAATCTTTCATTTCAAAGTGAGGGAAAAATAAGAAAAAGAGAGAGGGAGAGAGAGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>420 337 166 77</canonical_bands>
                <polymorphic_bands>420 414 166</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>421 300 165 77 37</canonical_bands>
                <polymorphic_bands>421 377 165 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACACCTCAAAATTTTTCAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTAATCAATTTCGGTATCATAAAC</pcr_primer_p2>
		<pcr_amplicon_size>419</pcr_amplicon_size>
		<canonical_amplicon>AACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAA</canonical_amplicon>
		<polymorphic_amplicon>AACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCRGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9393</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>420807</contig_pos>
        <strand>+</strand>
        <context>cagttttGAA[A/T]CCRGAGTTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAA</left_flank>
        <right_flank>CCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACAATTCAAACCATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATAAAATGAACATGTGTTTTCAAAATTTGATAAGTTGGATGTATTCTCAATTTTCGACAATTCCCATTTCCAACACCTGATGGCATGAGTTTTATTCTTCGTTGGTCTTTCTTTCTCTCCGTTTTCTTCTCAATTCAAAAAAGATATATTACCATTATTCTAGACTGTTTCTTCTTGTCGTTTCTCCCCCAAAATCCGAAATGTCCCTTTGTCTCTTTCTTTTTTCCCGGGGCATTTCGGCCTCTCTCTCCTGGTTTCTGTCTCCGGAGGAGGACGGAGCGACGGTTCGATTCGATTGCTAATGCGAAAATTACCAGTCTCTCCTCTCCTCTTCTTGAAATGAATATGAAGAAGAAGTGTCTTCTTCGGAACAATCTTTCATTTCAAAGTGAGGGAAAAATAAGAAAAAGAGAGAGGGAGAGAGAG</canonical>
            <polymorphic>TAACAATTCAAACCATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAWCCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATAAAATGAACATGTGTTTTCAAAATTTGATAAGTTGGATGTATTCTCAATTTTCGACAATTCCCATTTCCAACACCTGATGGCATGAGTTTTATTCTTCGTTGGTCTTTCTTTCTCTCCGTTTTCTTCTCAATTCAAAAAAGATATATTACCATTATTCTAGACTGTTTCTTCTTGTCGTTTCTCCCCCAAAATCCGAAATGTCCCTTTGTCTCTTTCTTTTTTCCCGGGGCATTTCGGCCTCTCTCTCCTGGTTTCTGTCTCCGGAGGAGGACGGAGCGACGGTTCGATTCGATTGCTAATGCGAAAATTACCAGTCTCTCCTCTCCTCTTCTTGAAATGAATATGAAGAAGAAGTGTCTTCTTCGGAACAATCTTTCATTTCAAAGTGAGGGAAAAATAAGAAAAAGAGAGAGGGAGAGAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>423 337 163 77</canonical_bands>
                <polymorphic_bands>423 414 163</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACACCTCAAAATTTTTCAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTAATCAATTTCGGTATCATAAAC</pcr_primer_p2>
		<pcr_amplicon_size>419</pcr_amplicon_size>
		<canonical_amplicon>AACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAA</canonical_amplicon>
		<polymorphic_amplicon>AACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAWCCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9398</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>428663</contig_pos>
        <strand>+</strand>
        <context>TTGTCTAGGA[C/T]CTTATCGGCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCAAAACATTTCGAGACAGTAACCTAACAACAACATAGCTTGTCTAGGA</left_flank>
        <right_flank>CTTATCGGCGACTGAGATCAAAGGAACAACTTCAAGACGTAGTATCCGAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACCTCTAGAATCCTTTGGAACCCTCTAGAATCCTTCAAAATCTTCTAGAAACTTTCAAAATCTTACGTAATCTTTTAGAAGCATTTAGAATCATCCAAAATTCTCCAGAAGCCCTGAGAATCCTCTAGAAGCTTTGAGAATCTTTCAGACATCTCCAAAACCCTTCAGAACCCTTCAGAAACCTCGAAAATTTTCCAGAATGTTAACAACTCTTCTAGAACTTTCTAGAAGCCTTCAGAACTCTCTAGAATGTCTCAGAATTTCCGAAAATCTTCAGAATACTCTAGAATTCTCCAGAATCATCAAGAATCTTTCAGTATTTCTCTAGACATCTTTCCTATCTTCTCGAATTCTCAAAATTCTTCTCTGATCAAGATCAAAGGACCATTGTCCTTTCGAGACAGACACACTTCCAATTAGCAACAGCTGCAGGTGTCACGCTGTCTTGTCAAAACATTTCGAGACAGTAACCTAACAACAACATAGCTTGTCTAGGATCTTATCGGCGACTGAGATCAAAGGAACAACTTCAAGACGTAGTATCCGAAAACTGATCTTTGATTCCTACAGTTGCCCAACTTTTGAAAGCAAAGTACATTTCGTTATAGAAAAACAATTTCTAATTAGCATATGAATCACAGGATCTTATGATCGGAGAAGGAGGAAGGGGTGAAAGTTAAAGTTTCGTGGCCAGGTAAGAGGCTGGGGGTACTGTAGTTGAGGGACTGAGAAAGGGGGCTACAGTGATCCTACCTATTTCTTCGTTACAGTAATCTTTGTAGTTTTCAAAGAATTTTCACTACAGTAATCCTTTTAATTTTTGATTTTTTGTCTGTTGCTCAGCTCGGAGAGTCCCCAAATTCCCCAAACTTTTGTGCACTTTCTTCTTCAAATCCTGCTGAGCATCGACCTGCTCTTCTATTTCCTAGAGTCATTTCAACAAATTGGAATTTCCACTCCTTCTTCTTCTACTACTTTCTTCCTCTCCCACGTATAAA</canonical>
            <polymorphic>ACACCTCTAGAATCCTTTGGAACCCTCTAGAATCCTTCAAAATCTTCTAGAAACTTTCAAAATCTTACGTAATCTTTTAGAAGCATTTAGAATCATCCAAAATTCTCCAGAAGCCCTGAGAATCCTCTAGAAGCTTTGAGAATCTTTCAGACATCTCCAAAACCCTTCAGAACCCTTCAGAAACCTCGAAAATTTTCCAGAATGTTAACAACTCTTCTAGAACTTTCTAGAAGCCTTCAGAACTCTCTAGAATGTCTCAGAATTTCCGAAAATCTTCAGAATACTCTAGAATTCTCCAGAATCATCAAGAATCTTTCAGTATTTCTCTAGACATCTTTCCTATCTTCTCGAATTCTCAAAATTCTTCTCTGATCAAGATCAAAGGACCATTGTCCTTTCGAGACAGACACACTTCCAATTAGCAACAGCTGCAGGTGTCACGCTGTCTTGTCAAAACATTTCGAGACAGTAACCTAACAACAACATAGCTTGTCTAGGAYCTTATCGGCGACTGAGATCAAAGGAACAACTTCAAGACGTAGTATCCGAAAACTGATCTTTGATTCCTACAGTTGCCCAACTTTTGAAAGCAAAGTACATTTCGTTATAGAAAAACAATTTCTAATTAGCATATGAATCACAGGATCTTATGATCGGAGAAGGAGGAAGGGGTGAAAGTTAAAGTTTCGTGGCCAGGTAAGAGGCTGGGGGTACTGTAGTTGAGGGACTGAGAAAGGGGGCTACAGTGATCCTACCTATTTCTTCGTTACAGTAATCTTTGTAGTTTTCAAAGAATTTTCACTACAGTAATCCTTTTAATTTTTGATTTTTTGTCTGTTGCTCAGCTCGGAGAGTCCCCAAATTCCCCAAACTTTTGTGCACTTTCTTCTTCAAATCCTGCTGAGCATCGACCTGCTCTTCTATTTCCTAGAGTCATTTCAACAAATTGGAATTTCCACTCCTTCTTCTTCTACTACTTTCTTCCTCTCCCACGTATAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>370 253 121 96 89 39 18 8 6</canonical_bands>
                <polymorphic_bands>370 253 139 96 89 39 8 6</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>497 357 146</canonical_bands>
                <polymorphic_bands>643 357</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGACAGACACACTTCCAATTA</pcr_primer_p1>
		<pcr_primer_p2>AAGATCCTGTGATTCATATGCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGACAGACACACTTCCAATTAGCAACAGCTGCAGGTGTCACGCTGTCTTGTCAAAACATTTCGAGACAGTAACCTAACAACAACATAGCTTGTCTAGGATCTTATCGGCGACTGAGATCAAAGGAACAACTTCAAGACGTAGTATCCGAAAACTGATCTTTGATTCCTACAGTTGCCCAACTTTTGAAAGCAAAGTACATTTCGTTATAGAAAAACAATTTCTAATTAGCATATGAATCACAGGATCTT</canonical_amplicon>
		<polymorphic_amplicon>GAGACAGACACACTTCCAATTAGCAACAGCTGCAGGTGTCACGCTGTCTTGTCAAAACATTTCGAGACAGTAACCTAACAACAACATAGCTTGTCTAGGAYCTTATCGGCGACTGAGATCAAAGGAACAACTTCAAGACGTAGTATCCGAAAACTGATCTTTGATTCCTACAGTTGCCCAACTTTTGAAAGCAAAGTACATTTCGTTATAGAAAAACAATTTCTAATTAGCATATGAATCACAGGATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9399</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>428769</contig_pos>
        <strand>+</strand>
        <context>TACATTTCGT[A/T]WTAGAAAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCTTTGATTCCTACAGTTGCCCAACTTTTGAAAGCAAAGTACATTTCGT</left_flank>
        <right_flank>ATAGAAAAACAATTTCTAATTAGCATATGAATCACAGGATCTTATGATCG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGAAGCCCTGAGAATCCTCTAGAAGCTTTGAGAATCTTTCAGACATCTCCAAAACCCTTCAGAACCCTTCAGAAACCTCGAAAATTTTCCAGAATGTTAACAACTCTTCTAGAACTTTCTAGAAGCCTTCAGAACTCTCTAGAATGTCTCAGAATTTCCGAAAATCTTCAGAATACTCTAGAATTCTCCAGAATCATCAAGAATCTTTCAGTATTTCTCTAGACATCTTTCCTATCTTCTCGAATTCTCAAAATTCTTCTCTGATCAAGATCAAAGGACCATTGTCCTTTCGAGACAGACACACTTCCAATTAGCAACAGCTGCAGGTGTCACGCTGTCTTGTCAAAACATTTCGAGACAGTAACCTAACAACAACATAGCTTGTCTAGGATCTTATCGGCGACTGAGATCAAAGGAACAACTTCAAGACGTAGTATCCGAAAACTGATCTTTGATTCCTACAGTTGCCCAACTTTTGAAAGCAAAGTACATTTCGTTATAGAAAAACAATTTCTAATTAGCATATGAATCACAGGATCTTATGATCGGAGAAGGAGGAAGGGGTGAAAGTTAAAGTTTCGTGGCCAGGTAAGAGGCTGGGGGTACTGTAGTTGAGGGACTGAGAAAGGGGGCTACAGTGATCCTACCTATTTCTTCGTTACAGTAATCTTTGTAGTTTTCAAAGAATTTTCACTACAGTAATCCTTTTAATTTTTGATTTTTTGTCTGTTGCTCAGCTCGGAGAGTCCCCAAATTCCCCAAACTTTTGTGCACTTTCTTCTTCAAATCCTGCTGAGCATCGACCTGCTCTTCTATTTCCTAGAGTCATTTCAACAAATTGGAATTTCCACTCCTTCTTCTTCTACTACTTTCTTCCTCTCCCACGTATAAAGTAGTAGAAGTCCATTAATCGGACGAGGACAGGAAAGAAGAAGTATCTCCTAGCAAAAGCGTCTCTCTCCCACTAATCCCCTCCTCTCCTCTTTCTGAAATCCGTC</canonical>
            <polymorphic>CCAGAAGCCCTGAGAATCCTCTAGAAGCTTTGAGAATCTTTCAGACATCTCCAAAACCCTTCAGAACCCTTCAGAAACCTCGAAAATTTTCCAGAATGTTAACAACTCTTCTAGAACTTTCTAGAAGCCTTCAGAACTCTCTAGAATGTCTCAGAATTTCCGAAAATCTTCAGAATACTCTAGAATTCTCCAGAATCATCAAGAATCTTTCAGTATTTCTCTAGACATCTTTCCTATCTTCTCGAATTCTCAAAATTCTTCTCTGATCAAGATCAAAGGACCATTGTCCTTTCGAGACAGACACACTTCCAATTAGCAACAGCTGCAGGTGTCACGCTGTCTTGTCAAAACATTTCGAGACAGTAACCTAACAACAACATAGCTTGTCTAGGATCTTATCGGCGACTGAGATCAAAGGAACAACTTCAAGACGTAGTATCCGAAAACTGATCTTTGATTCCTACAGTTGCCCAACTTTTGAAAGCAAAGTACATTTCGTWATAGAAAAACAATTTCTAATTAGCATATGAATCACAGGATCTTATGATCGGAGAAGGAGGAAGGGGTGAAAGTTAAAGTTTCGTGGCCAGGTAAGAGGCTGGGGGTACTGTAGTTGAGGGACTGAGAAAGGGGGCTACAGTGATCCTACCTATTTCTTCGTTACAGTAATCTTTGTAGTTTTCAAAGAATTTTCACTACAGTAATCCTTTTAATTTTTGATTTTTTGTCTGTTGCTCAGCTCGGAGAGTCCCCAAATTCCCCAAACTTTTGTGCACTTTCTTCTTCAAATCCTGCTGAGCATCGACCTGCTCTTCTATTTCCTAGAGTCATTTCAACAAATTGGAATTTCCACTCCTTCTTCTTCTACTACTTTCTTCCTCTCCCACGTATAAAGTAGTAGAAGTCCATTAATCGGACGAGGACAGGAAAGAAGAAGTATCTCCTAGCAAAAGCGTCTCTCTCCCACTAATCCCCTCCTCTCCTCTTTCTGAAATCCGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAACAACATAGCTTGTCTAGGA</pcr_primer_p1>
		<pcr_primer_p2>TCAGTCCCTCAACTACAGTACC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>ACAACAACATAGCTTGTCTAGGATCTTATCGGCGACTGAGATCAAAGGAACAACTTCAAGACGTAGTATCCGAAAACTGATCTTTGATTCCTACAGTTGCCCAACTTTTGAAAGCAAAGTACATTTCGTTATAGAAAAACAATTTCTAATTAGCATATGAATCACAGGATCTTATGATCGGAGAAGGAGGAAGGGGTGAAAGTTAAAGTTTCGTGGCCAGGTAAGAGGCTGGGGGTACTGTAGTTGAGGGACTGA</canonical_amplicon>
		<polymorphic_amplicon>ACAACAACATAGCTTGTCTAGGATCTTATCGGCGACTGAGATCAAAGGAACAACTTCAAGACGTAGTATCCGAAAACTGATCTTTGATTCCTACAGTTGCCCAACTTTTGAAAGCAAAGTACATTTCGTWATAGAAAAACAATTTCTAATTAGCATATGAATCACAGGATCTTATGATCGGAGAAGGAGGAAGGGGTGAAAGTTAAAGTTTCGTGGCCAGGTAAGAGGCTGGGGGTACTGTAGTTGAGGGACTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9400</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>428770</contig_pos>
        <strand>+</strand>
        <context>ACATTTCGTW[A/T]TAGAAAAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTTTGATTCCTACAGTTGCCCAACTTTTGAAAGCAAAGTACATTTCGTT</left_flank>
        <right_flank>TAGAAAAACAATTTCTAATTAGCATATGAATCACAGGATCTTATGATCGG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAAGCCCTGAGAATCCTCTAGAAGCTTTGAGAATCTTTCAGACATCTCCAAAACCCTTCAGAACCCTTCAGAAACCTCGAAAATTTTCCAGAATGTTAACAACTCTTCTAGAACTTTCTAGAAGCCTTCAGAACTCTCTAGAATGTCTCAGAATTTCCGAAAATCTTCAGAATACTCTAGAATTCTCCAGAATCATCAAGAATCTTTCAGTATTTCTCTAGACATCTTTCCTATCTTCTCGAATTCTCAAAATTCTTCTCTGATCAAGATCAAAGGACCATTGTCCTTTCGAGACAGACACACTTCCAATTAGCAACAGCTGCAGGTGTCACGCTGTCTTGTCAAAACATTTCGAGACAGTAACCTAACAACAACATAGCTTGTCTAGGATCTTATCGGCGACTGAGATCAAAGGAACAACTTCAAGACGTAGTATCCGAAAACTGATCTTTGATTCCTACAGTTGCCCAACTTTTGAAAGCAAAGTACATTTCGTTATAGAAAAACAATTTCTAATTAGCATATGAATCACAGGATCTTATGATCGGAGAAGGAGGAAGGGGTGAAAGTTAAAGTTTCGTGGCCAGGTAAGAGGCTGGGGGTACTGTAGTTGAGGGACTGAGAAAGGGGGCTACAGTGATCCTACCTATTTCTTCGTTACAGTAATCTTTGTAGTTTTCAAAGAATTTTCACTACAGTAATCCTTTTAATTTTTGATTTTTTGTCTGTTGCTCAGCTCGGAGAGTCCCCAAATTCCCCAAACTTTTGTGCACTTTCTTCTTCAAATCCTGCTGAGCATCGACCTGCTCTTCTATTTCCTAGAGTCATTTCAACAAATTGGAATTTCCACTCCTTCTTCTTCTACTACTTTCTTCCTCTCCCACGTATAAAGTAGTAGAAGTCCATTAATCGGACGAGGACAGGAAAGAAGAAGTATCTCCTAGCAAAAGCGTCTCTCTCCCACTAATCCCCTCCTCTCCTCTTTCTGAAATCCGTCT</canonical>
            <polymorphic>CAGAAGCCCTGAGAATCCTCTAGAAGCTTTGAGAATCTTTCAGACATCTCCAAAACCCTTCAGAACCCTTCAGAAACCTCGAAAATTTTCCAGAATGTTAACAACTCTTCTAGAACTTTCTAGAAGCCTTCAGAACTCTCTAGAATGTCTCAGAATTTCCGAAAATCTTCAGAATACTCTAGAATTCTCCAGAATCATCAAGAATCTTTCAGTATTTCTCTAGACATCTTTCCTATCTTCTCGAATTCTCAAAATTCTTCTCTGATCAAGATCAAAGGACCATTGTCCTTTCGAGACAGACACACTTCCAATTAGCAACAGCTGCAGGTGTCACGCTGTCTTGTCAAAACATTTCGAGACAGTAACCTAACAACAACATAGCTTGTCTAGGATCTTATCGGCGACTGAGATCAAAGGAACAACTTCAAGACGTAGTATCCGAAAACTGATCTTTGATTCCTACAGTTGCCCAACTTTTGAAAGCAAAGTACATTTCGTTWTAGAAAAACAATTTCTAATTAGCATATGAATCACAGGATCTTATGATCGGAGAAGGAGGAAGGGGTGAAAGTTAAAGTTTCGTGGCCAGGTAAGAGGCTGGGGGTACTGTAGTTGAGGGACTGAGAAAGGGGGCTACAGTGATCCTACCTATTTCTTCGTTACAGTAATCTTTGTAGTTTTCAAAGAATTTTCACTACAGTAATCCTTTTAATTTTTGATTTTTTGTCTGTTGCTCAGCTCGGAGAGTCCCCAAATTCCCCAAACTTTTGTGCACTTTCTTCTTCAAATCCTGCTGAGCATCGACCTGCTCTTCTATTTCCTAGAGTCATTTCAACAAATTGGAATTTCCACTCCTTCTTCTTCTACTACTTTCTTCCTCTCCCACGTATAAAGTAGTAGAAGTCCATTAATCGGACGAGGACAGGAAAGAAGAAGTATCTCCTAGCAAAAGCGTCTCTCTCCCACTAATCCCCTCCTCTCCTCTTTCTGAAATCCGTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAACAACATAGCTTGTCTAGGA</pcr_primer_p1>
		<pcr_primer_p2>TCAGTCCCTCAACTACAGTACC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>ACAACAACATAGCTTGTCTAGGATCTTATCGGCGACTGAGATCAAAGGAACAACTTCAAGACGTAGTATCCGAAAACTGATCTTTGATTCCTACAGTTGCCCAACTTTTGAAAGCAAAGTACATTTCGTTATAGAAAAACAATTTCTAATTAGCATATGAATCACAGGATCTTATGATCGGAGAAGGAGGAAGGGGTGAAAGTTAAAGTTTCGTGGCCAGGTAAGAGGCTGGGGGTACTGTAGTTGAGGGACTGA</canonical_amplicon>
		<polymorphic_amplicon>ACAACAACATAGCTTGTCTAGGATCTTATCGGCGACTGAGATCAAAGGAACAACTTCAAGACGTAGTATCCGAAAACTGATCTTTGATTCCTACAGTTGCCCAACTTTTGAAAGCAAAGTACATTTCGTTWTAGAAAAACAATTTCTAATTAGCATATGAATCACAGGATCTTATGATCGGAGAAGGAGGAAGGGGTGAAAGTTAAAGTTTCGTGGCCAGGTAAGAGGCTGGGGGTACTGTAGTTGAGGGACTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9401</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>430690</contig_pos>
        <strand>+</strand>
        <context>GGCTATGGAA[C/T]CTTATATGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAATGAAGACGTTCTATCAATTCAGAAGACATGGAGACAGGCTATGGAA</left_flank>
        <right_flank>CTTATATGGGATATTTCTGTCGTTATATTTGTTTTAGATTTGCTCATTCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAATTCATCTCTCCATGATACCAGAATTTCACGAATCATCAATCAAATAATCAGTATTCATATATGTTTCTCGTTTTCCGAAACTTGCCTTTTCCAGAGAGACCACCCACAGTGTGGCACCACACTGTGCGATGAAATATGCATTTTCTAAAGGAAACGAAGTTTCGTATTTCTAGGAAAATCAAAAGGGATTTTGAATCGAACTACAGACATAAATGTGATGATGACGTTTTTTTTGTTTTTCAGTGGTAAATTATTTAGAAGAAAAAGCTACAAATGATTTCTACATTAATTCCAAAATAAATTTGTATCTTCCTGGTCTTATTCCAAACACAATCGACGGAAACATGTACAAATAGACTCTACCATAGTCGTTTATGAAAAGGGGTTCTTCAAGGACTACTTCTGAATAAATACCGGAAACGTTTACGAATAGCTGTCAAGGGGTTCAATGAAGACGTTCTATCAATTCAGAAGACATGGAGACAGGCTATGGAATCTTATATGGGATATTTCTGTCGTTATATTTGTTTTAGATTTGCTCATTCTAACTGAGCCCTTAAGCTACAGTAAACCTACATGTAATAGAAGAGTCTGTACTTAAAACGTTGAGCCAGTTTATATCGGATCCTGTTAAAGACTTTGAGAAGTTGTCAACTGATAAACTGTTTGACATAATATCCCAAACATTTTTACAGTTGACAACTTTATTATATCTTTCACTTGAATCTAGGTAATTGAGCTCGAAGTTAAAAAATTAGGAGGCTCCTTTATTAGAAGCTTTACGGTAAATTTGTTCAAAAAGGCTCACCAAATTCTTGCGAGGACTACCGGTCAGATAATAAGCGAACGGGTAGGTGTACTGTAGCGTGTAACGACATTTTGTGAGCAATGACACTGATTTGTGGAGATACTGCCAATCGATCCATGTTCCGTTGTGCTCGTTTACCTGGAAGAAACAAATTTTGTGCAAATTTTCAAAGCAAAATCAGTAAGATT</canonical>
            <polymorphic>ATAATTCATCTCTCCATGATACCAGAATTTCACGAATCATCAATCAAATAATCAGTATTCATATATGTTTCTCGTTTTCCGAAACTTGCCTTTTCCAGAGAGACCACCCACAGTGTGGCACCACACTGTGCGATGAAATATGCATTTTCTAAAGGAAACGAAGTTTCGTATTTCTAGGAAAATCAAAAGGGATTTTGAATCGAACTACAGACATAAATGTGATGATGACGTTTTTTTTGTTTTTCAGTGGTAAATTATTTAGAAGAAAAAGCTACAAATGATTTCTACATTAATTCCAAAATAAATTTGTATCTTCCTGGTCTTATTCCAAACACAATCGACGGAAACATGTACAAATAGACTCTACCATAGTCGTTTATGAAAAGGGGTTCTTCAAGGACTACTTCTGAATAAATACCGGAAACGTTTACGAATAGCTGTCAAGGGGTTCAATGAAGACGTTCTATCAATTCAGAAGACATGGAGACAGGCTATGGAAYCTTATATGGGATATTTCTGTCGTTATATTTGTTTTAGATTTGCTCATTCTAACTGAGCCCTTAAGCTACAGTAAACCTACATGTAATAGAAGAGTCTGTACTTAAAACGTTGAGCCAGTTTATATCGGATCCTGTTAAAGACTTTGAGAAGTTGTCAACTGATAAACTGTTTGACATAATATCCCAAACATTTTTACAGTTGACAACTTTATTATATCTTTCACTTGAATCTAGGTAATTGAGCTCGAAGTTAAAAAATTAGGAGGCTCCTTTATTAGAAGCTTTACGGTAAATTTGTTCAAAAAGGCTCACCAAATTCTTGCGAGGACTACCGGTCAGATAATAAGCGAACGGGTAGGTGTACTGTAGCGTGTAACGACATTTTGTGAGCAATGACACTGATTTGTGGAGATACTGCCAATCGATCCATGTTCCGTTGTGCTCGTTTACCTGGAAGAAACAAATTTTGTGCAAATTTTCAAAGCAAAATCAGTAAGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>273 163 163 137 135 95 34</canonical_bands>
                <polymorphic_bands>273 232 163 163 135 34</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>300 273 230 163 34</canonical_bands>
                <polymorphic_bands>530 273 163 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGTATCTTCCTGGTCTTATTC</pcr_primer_p1>
		<pcr_primer_p2>CAGTTAGAATGAGCAAATCTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGTATCTTCCTGGTCTTATTCCAAACACAATCGACGGAAACATGTACAAATAGACTCTACCATAGTCGTTTATGAAAAGGGGTTCTTCAAGGACTACTTCTGAATAAATACCGGAAACGTTTACGAATAGCTGTCAAGGGGTTCAATGAAGACGTTCTATCAATTCAGAAGACATGGAGACAGGCTATGGAATCTTATATGGGATATTTCTGTCGTTATATTTGTTTTAGATTTGCTCATTCTAACTG</canonical_amplicon>
		<polymorphic_amplicon>TTTGTATCTTCCTGGTCTTATTCCAAACACAATCGACGGAAACATGTACAAATAGACTCTACCATAGTCGTTTATGAAAAGGGGTTCTTCAAGGACTACTTCTGAATAAATACCGGAAACGTTTACGAATAGCTGTCAAGGGGTTCAATGAAGACGTTCTATCAATTCAGAAGACATGGAGACAGGCTATGGAAYCTTATATGGGATATTTCTGTCGTTATATTTGTTTTAGATTTGCTCATTCTAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9402</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>430678</contig_pos>
        <strand>+</strand>
        <context>GACATGGAGA[C/T]AGGCTATGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGTCAAGGGGTTCAATGAAGACGTTCTATCAATTCAGAAGACATGGAGA</left_flank>
        <right_flank>AGGCTATGGAATCTTATATGGGATATTTCTGTCGTTATATTTGTTTTAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTTTTCAATAATAATTCATCTCTCCATGATACCAGAATTTCACGAATCATCAATCAAATAATCAGTATTCATATATGTTTCTCGTTTTCCGAAACTTGCCTTTTCCAGAGAGACCACCCACAGTGTGGCACCACACTGTGCGATGAAATATGCATTTTCTAAAGGAAACGAAGTTTCGTATTTCTAGGAAAATCAAAAGGGATTTTGAATCGAACTACAGACATAAATGTGATGATGACGTTTTTTTTGTTTTTCAGTGGTAAATTATTTAGAAGAAAAAGCTACAAATGATTTCTACATTAATTCCAAAATAAATTTGTATCTTCCTGGTCTTATTCCAAACACAATCGACGGAAACATGTACAAATAGACTCTACCATAGTCGTTTATGAAAAGGGGTTCTTCAAGGACTACTTCTGAATAAATACCGGAAACGTTTACGAATAGCTGTCAAGGGGTTCAATGAAGACGTTCTATCAATTCAGAAGACATGGAGACAGGCTATGGAATCTTATATGGGATATTTCTGTCGTTATATTTGTTTTAGATTTGCTCATTCTAACTGAGCCCTTAAGCTACAGTAAACCTACATGTAATAGAAGAGTCTGTACTTAAAACGTTGAGCCAGTTTATATCGGATCCTGTTAAAGACTTTGAGAAGTTGTCAACTGATAAACTGTTTGACATAATATCCCAAACATTTTTACAGTTGACAACTTTATTATATCTTTCACTTGAATCTAGGTAATTGAGCTCGAAGTTAAAAAATTAGGAGGCTCCTTTATTAGAAGCTTTACGGTAAATTTGTTCAAAAAGGCTCACCAAATTCTTGCGAGGACTACCGGTCAGATAATAAGCGAACGGGTAGGTGTACTGTAGCGTGTAACGACATTTTGTGAGCAATGACACTGATTTGTGGAGATACTGCCAATCGATCCATGTTCCGTTGTGCTCGTTTACCTGGAAGAAACAAATTTTGTGCAAATTTTCAAAGCAAA</canonical>
            <polymorphic>TCGTTTTCAATAATAATTCATCTCTCCATGATACCAGAATTTCACGAATCATCAATCAAATAATCAGTATTCATATATGTTTCTCGTTTTCCGAAACTTGCCTTTTCCAGAGAGACCACCCACAGTGTGGCACCACACTGTGCGATGAAATATGCATTTTCTAAAGGAAACGAAGTTTCGTATTTCTAGGAAAATCAAAAGGGATTTTGAATCGAACTACAGACATAAATGTGATGATGACGTTTTTTTTGTTTTTCAGTGGTAAATTATTTAGAAGAAAAAGCTACAAATGATTTCTACATTAATTCCAAAATAAATTTGTATCTTCCTGGTCTTATTCCAAACACAATCGACGGAAACATGTACAAATAGACTCTACCATAGTCGTTTATGAAAAGGGGTTCTTCAAGGACTACTTCTGAATAAATACCGGAAACGTTTACGAATAGCTGTCAAGGGGTTCAATGAAGACGTTCTATCAATTCAGAAGACATGGAGAYAGGCTATGGAATCTTATATGGGATATTTCTGTCGTTATATTTGTTTTAGATTTGCTCATTCTAACTGAGCCCTTAAGCTACAGTAAACCTACATGTAATAGAAGAGTCTGTACTTAAAACGTTGAGCCAGTTTATATCGGATCCTGTTAAAGACTTTGAGAAGTTGTCAACTGATAAACTGTTTGACATAATATCCCAAACATTTTTACAGTTGACAACTTTATTATATCTTTCACTTGAATCTAGGTAATTGAGCTCGAAGTTAAAAAATTAGGAGGCTCCTTTATTAGAAGCTTTACGGTAAATTTGTTCAAAAAGGCTCACCAAATTCTTGCGAGGACTACCGGTCAGATAATAAGCGAACGGGTAGGTGTACTGTAGCGTGTAACGACATTTTGTGAGCAATGACACTGATTTGTGGAGATACTGCCAATCGATCCATGTTCCGTTGTGCTCGTTTACCTGGAAGAAACAAATTTTGTGCAAATTTTCAAAGCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTATCTTCCTGGTCTTATTC</pcr_primer_p1>
		<pcr_primer_p2>CAGTTAGAATGAGCAAATCTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGTATCTTCCTGGTCTTATTCCAAACACAATCGACGGAAACATGTACAAATAGACTCTACCATAGTCGTTTATGAAAAGGGGTTCTTCAAGGACTACTTCTGAATAAATACCGGAAACGTTTACGAATAGCTGTCAAGGGGTTCAATGAAGACGTTCTATCAATTCAGAAGACATGGAGACAGGCTATGGAATCTTATATGGGATATTTCTGTCGTTATATTTGTTTTAGATTTGCTCATTCTAACTG</canonical_amplicon>
		<polymorphic_amplicon>TTTGTATCTTCCTGGTCTTATTCCAAACACAATCGACGGAAACATGTACAAATAGACTCTACCATAGTCGTTTATGAAAAGGGGTTCTTCAAGGACTACTTCTGAATAAATACCGGAAACGTTTACGAATAGCTGTCAAGGGGTTCAATGAAGACGTTCTATCAATTCAGAAGACATGGAGAYAGGCTATGGAATCTTATATGGGATATTTCTGTCGTTATATTTGTTTTAGATTTGCTCATTCTAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9403</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>430593</contig_pos>
        <strand>+</strand>
        <context>TTCAAGGACT[A/G]CTTCTGAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAAATAGACTCTACCATAGTCGTTTATGAAAAGGGGTTCTTCAAGGACT</left_flank>
        <right_flank>CTTCTGAATAAATACCGGAAACGTTTACGAATAGCTGTCAAGGGGTTCAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACAGTGTGGGGCCCTTCTATTACAGGTTTTACGGTAGCCTCAGAAATTTCTCTTTGCAATTCTCATACATCTCTTTTCCTTCCGTCGTTTTCAATAATAATTCATCTCTCCATGATACCAGAATTTCACGAATCATCAATCAAATAATCAGTATTCATATATGTTTCTCGTTTTCCGAAACTTGCCTTTTCCAGAGAGACCACCCACAGTGTGGCACCACACTGTGCGATGAAATATGCATTTTCTAAAGGAAACGAAGTTTCGTATTTCTAGGAAAATCAAAAGGGATTTTGAATCGAACTACAGACATAAATGTGATGATGACGTTTTTTTTGTTTTTCAGTGGTAAATTATTTAGAAGAAAAAGCTACAAATGATTTCTACATTAATTCCAAAATAAATTTGTATCTTCCTGGTCTTATTCCAAACACAATCGACGGAAACATGTACAAATAGACTCTACCATAGTCGTTTATGAAAAGGGGTTCTTCAAGGACTACTTCTGAATAAATACCGGAAACGTTTACGAATAGCTGTCAAGGGGTTCAATGAAGACGTTCTATCAATTCAGAAGACATGGAGACAGGCTATGGAATCTTATATGGGATATTTCTGTCGTTATATTTGTTTTAGATTTGCTCATTCTAACTGAGCCCTTAAGCTACAGTAAACCTACATGTAATAGAAGAGTCTGTACTTAAAACGTTGAGCCAGTTTATATCGGATCCTGTTAAAGACTTTGAGAAGTTGTCAACTGATAAACTGTTTGACATAATATCCCAAACATTTTTACAGTTGACAACTTTATTATATCTTTCACTTGAATCTAGGTAATTGAGCTCGAAGTTAAAAAATTAGGAGGCTCCTTTATTAGAAGCTTTACGGTAAATTTGTTCAAAAAGGCTCACCAAATTCTTGCGAGGACTACCGGTCAGATAATAAGCGAACGGGTAGGTGTACTGTAGCGTGTAACGACATTTTGTGAGCAATGACACTGAT</canonical>
            <polymorphic>GACAGTGTGGGGCCCTTCTATTACAGGTTTTACGGTAGCCTCAGAAATTTCTCTTTGCAATTCTCATACATCTCTTTTCCTTCCGTCGTTTTCAATAATAATTCATCTCTCCATGATACCAGAATTTCACGAATCATCAATCAAATAATCAGTATTCATATATGTTTCTCGTTTTCCGAAACTTGCCTTTTCCAGAGAGACCACCCACAGTGTGGCACCACACTGTGCGATGAAATATGCATTTTCTAAAGGAAACGAAGTTTCGTATTTCTAGGAAAATCAAAAGGGATTTTGAATCGAACTACAGACATAAATGTGATGATGACGTTTTTTTTGTTTTTCAGTGGTAAATTATTTAGAAGAAAAAGCTACAAATGATTTCTACATTAATTCCAAAATAAATTTGTATCTTCCTGGTCTTATTCCAAACACAATCGACGGAAACATGTACAAATAGACTCTACCATAGTCGTTTATGAAAAGGGGTTCTTCAAGGACTRCTTCTGAATAAATACCGGAAACGTTTACGAATAGCTGTCAAGGGGTTCAATGAAGACGTTCTATCAATTCAGAAGACATGGAGACAGGCTATGGAATCTTATATGGGATATTTCTGTCGTTATATTTGTTTTAGATTTGCTCATTCTAACTGAGCCCTTAAGCTACAGTAAACCTACATGTAATAGAAGAGTCTGTACTTAAAACGTTGAGCCAGTTTATATCGGATCCTGTTAAAGACTTTGAGAAGTTGTCAACTGATAAACTGTTTGACATAATATCCCAAACATTTTTACAGTTGACAACTTTATTATATCTTTCACTTGAATCTAGGTAATTGAGCTCGAAGTTAAAAAATTAGGAGGCTCCTTTATTAGAAGCTTTACGGTAAATTTGTTCAAAAAGGCTCACCAAATTCTTGCGAGGACTACCGGTCAGATAATAAGCGAACGGGTAGGTGTACTGTAGCGTGTAACGACATTTTGTGAGCAATGACACTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTATCTTCCTGGTCTTATTC</pcr_primer_p1>
		<pcr_primer_p2>CAGTTAGAATGAGCAAATCTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGTATCTTCCTGGTCTTATTCCAAACACAATCGACGGAAACATGTACAAATAGACTCTACCATAGTCGTTTATGAAAAGGGGTTCTTCAAGGACTACTTCTGAATAAATACCGGAAACGTTTACGAATAGCTGTCAAGGGGTTCAATGAAGACGTTCTATCAATTCAGAAGACATGGAGACAGGCTATGGAATCTTATATGGGATATTTCTGTCGTTATATTTGTTTTAGATTTGCTCATTCTAACTG</canonical_amplicon>
		<polymorphic_amplicon>TTTGTATCTTCCTGGTCTTATTCCAAACACAATCGACGGAAACATGTACAAATAGACTCTACCATAGTCGTTTATGAAAAGGGGTTCTTCAAGGACTRCTTCTGAATAAATACCGGAAACGTTTACGAATAGCTGTCAAGGGGTTCAATGAAGACGTTCTATCAATTCAGAAGACATGGAGACAGGCTATGGAATCTTATATGGGATATTTCTGTCGTTATATTTGTTTTAGATTTGCTCATTCTAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9404</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>430492</contig_pos>
        <strand>+</strand>
        <context>ARTTCCAAAA[G/T]AAATTTGTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATTATTTAGAAGAAAAAGCTACAAATGATTTCTACATTAATTCCAAAA</left_flank>
        <right_flank>AAATTTGTATCTTCCTGGTCTTATTCCAAACACAATCGACGGAAACATGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAACTAGGTCAAAGTTGCCTGATTTTTAGGAAACTTTCAGGGAAATGTGGAACGTAAACATAACTACGTAAACATTTCGATATCTTGCACAGGAATAGAGACAGTGTGGGGCCCTTCTATTACAGGTTTTACGGTAGCCTCAGAAATTTCTCTTTGCAATTCTCATACATCTCTTTTCCTTCCGTCGTTTTCAATAATAATTCATCTCTCCATGATACCAGAATTTCACGAATCATCAATCAAATAATCAGTATTCATATATGTTTCTCGTTTTCCGAAACTTGCCTTTTCCAGAGAGACCACCCACAGTGTGGCACCACACTGTGCGATGAAATATGCATTTTCTAAAGGAAACGAAGTTTCGTATTTCTAGGAAAATCAAAAGGGATTTTGAATCGAACTACAGACATAAATGTGATGATGACGTTTTTTTTGTTTTTCAGTGGTAAATTATTTAGAAGAAAAAGCTACAAATGATTTCTACATTAATTCCAAAATAAATTTGTATCTTCCTGGTCTTATTCCAAACACAATCGACGGAAACATGTACAAATAGACTCTACCATAGTCGTTTATGAAAAGGGGTTCTTCAAGGACTACTTCTGAATAAATACCGGAAACGTTTACGAATAGCTGTCAAGGGGTTCAATGAAGACGTTCTATCAATTCAGAAGACATGGAGACAGGCTATGGAATCTTATATGGGATATTTCTGTCGTTATATTTGTTTTAGATTTGCTCATTCTAACTGAGCCCTTAAGCTACAGTAAACCTACATGTAATAGAAGAGTCTGTACTTAAAACGTTGAGCCAGTTTATATCGGATCCTGTTAAAGACTTTGAGAAGTTGTCAACTGATAAACTGTTTGACATAATATCCCAAACATTTTTACAGTTGACAACTTTATTATATCTTTCACTTGAATCTAGGTAATTGAGCTCGAAGTTAAAAAATTAGGAGGCTCCTTTATTAGAAGCTTTACGGTAAATTTGTTCAA</canonical>
            <polymorphic>AAAAACTAGGTCAAAGTTGCCTGATTTTTAGGAAACTTTCAGGGAAATGTGGAACGTAAACATAACTACGTAAACATTTCGATATCTTGCACAGGAATAGAGACAGTGTGGGGCCCTTCTATTACAGGTTTTACGGTAGCCTCAGAAATTTCTCTTTGCAATTCTCATACATCTCTTTTCCTTCCGTCGTTTTCAATAATAATTCATCTCTCCATGATACCAGAATTTCACGAATCATCAATCAAATAATCAGTATTCATATATGTTTCTCGTTTTCCGAAACTTGCCTTTTCCAGAGAGACCACCCACAGTGTGGCACCACACTGTGCGATGAAATATGCATTTTCTAAAGGAAACGAAGTTTCGTATTTCTAGGAAAATCAAAAGGGATTTTGAATCGAACTACAGACATAAATGTGATGATGACGTTTTTTTTGTTTTTCAGTGGTAAATTATTTAGAAGAAAAAGCTACAAATGATTTCTACATTAATTCCAAAAKAAATTTGTATCTTCCTGGTCTTATTCCAAACACAATCGACGGAAACATGTACAAATAGACTCTACCATAGTCGTTTATGAAAAGGGGTTCTTCAAGGACTACTTCTGAATAAATACCGGAAACGTTTACGAATAGCTGTCAAGGGGTTCAATGAAGACGTTCTATCAATTCAGAAGACATGGAGACAGGCTATGGAATCTTATATGGGATATTTCTGTCGTTATATTTGTTTTAGATTTGCTCATTCTAACTGAGCCCTTAAGCTACAGTAAACCTACATGTAATAGAAGAGTCTGTACTTAAAACGTTGAGCCAGTTTATATCGGATCCTGTTAAAGACTTTGAGAAGTTGTCAACTGATAAACTGTTTGACATAATATCCCAAACATTTTTACAGTTGACAACTTTATTATATCTTTCACTTGAATCTAGGTAATTGAGCTCGAAGTTAAAAAATTAGGAGGCTCCTTTATTAGAAGCTTTACGGTAAATTTGTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTTCTAAAGGAAACGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>ACCCCTTTTCATAAACGACTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CATTTTCTAAAGGAAACGAAGTTTCGTATTTCTAGGAAAATCAAAAGGGATTTTGAATCGAACTACAGACATAAATGTGATGATGACGTTTTTTTTGTTTTTCAGTGGTAAATTATTTAGAAGAAAAAGCTACAAATGATTTCTACATTAATTCCAAAATAAATTTGTATCTTCCTGGTCTTATTCCAAACACAATCGACGGAAACATGTACAAATAGACTCTACCATAGTCGTTTATGAAAAGGGGT</canonical_amplicon>
		<polymorphic_amplicon>CATTTTCTAAAGGAAACGAAGTTTCGTATTTCTAGGAAAATCAAAAGGGATTTTGAATCGAACTACAGACATAAATGTGATGATGACGTTTTTTTTGTTTTTCAGTGGTAAATTATTTAGAAGAAAAAGCTACAAATGATTTCTACATTAATTCCAAAAKAAATTTGTATCTTCCTGGTCTTATTCCAAACACAATCGACGGAAACATGTACAAATAGACTCTACCATAGTCGTTTATGAAAAGGGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9405</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>430483</contig_pos>
        <strand>+</strand>
        <context>TTCTACATTA[A/G]TTCCAAAAKA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAGTGGTAAATTATTTAGAAGAAAAAGCTACAAATGATTTCTACATTA</left_flank>
        <right_flank>TTCCAAAATAAATTTGTATCTTCCTGGTCTTATTCCAAACACAATCGACG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAGCTCTAAAAACTAGGTCAAAGTTGCCTGATTTTTAGGAAACTTTCAGGGAAATGTGGAACGTAAACATAACTACGTAAACATTTCGATATCTTGCACAGGAATAGAGACAGTGTGGGGCCCTTCTATTACAGGTTTTACGGTAGCCTCAGAAATTTCTCTTTGCAATTCTCATACATCTCTTTTCCTTCCGTCGTTTTCAATAATAATTCATCTCTCCATGATACCAGAATTTCACGAATCATCAATCAAATAATCAGTATTCATATATGTTTCTCGTTTTCCGAAACTTGCCTTTTCCAGAGAGACCACCCACAGTGTGGCACCACACTGTGCGATGAAATATGCATTTTCTAAAGGAAACGAAGTTTCGTATTTCTAGGAAAATCAAAAGGGATTTTGAATCGAACTACAGACATAAATGTGATGATGACGTTTTTTTTGTTTTTCAGTGGTAAATTATTTAGAAGAAAAAGCTACAAATGATTTCTACATTAATTCCAAAATAAATTTGTATCTTCCTGGTCTTATTCCAAACACAATCGACGGAAACATGTACAAATAGACTCTACCATAGTCGTTTATGAAAAGGGGTTCTTCAAGGACTACTTCTGAATAAATACCGGAAACGTTTACGAATAGCTGTCAAGGGGTTCAATGAAGACGTTCTATCAATTCAGAAGACATGGAGACAGGCTATGGAATCTTATATGGGATATTTCTGTCGTTATATTTGTTTTAGATTTGCTCATTCTAACTGAGCCCTTAAGCTACAGTAAACCTACATGTAATAGAAGAGTCTGTACTTAAAACGTTGAGCCAGTTTATATCGGATCCTGTTAAAGACTTTGAGAAGTTGTCAACTGATAAACTGTTTGACATAATATCCCAAACATTTTTACAGTTGACAACTTTATTATATCTTTCACTTGAATCTAGGTAATTGAGCTCGAAGTTAAAAAATTAGGAGGCTCCTTTATTAGAAGCTTTACGGTAAA</canonical>
            <polymorphic>TTGAGCTCTAAAAACTAGGTCAAAGTTGCCTGATTTTTAGGAAACTTTCAGGGAAATGTGGAACGTAAACATAACTACGTAAACATTTCGATATCTTGCACAGGAATAGAGACAGTGTGGGGCCCTTCTATTACAGGTTTTACGGTAGCCTCAGAAATTTCTCTTTGCAATTCTCATACATCTCTTTTCCTTCCGTCGTTTTCAATAATAATTCATCTCTCCATGATACCAGAATTTCACGAATCATCAATCAAATAATCAGTATTCATATATGTTTCTCGTTTTCCGAAACTTGCCTTTTCCAGAGAGACCACCCACAGTGTGGCACCACACTGTGCGATGAAATATGCATTTTCTAAAGGAAACGAAGTTTCGTATTTCTAGGAAAATCAAAAGGGATTTTGAATCGAACTACAGACATAAATGTGATGATGACGTTTTTTTTGTTTTTCAGTGGTAAATTATTTAGAAGAAAAAGCTACAAATGATTTCTACATTARTTCCAAAATAAATTTGTATCTTCCTGGTCTTATTCCAAACACAATCGACGGAAACATGTACAAATAGACTCTACCATAGTCGTTTATGAAAAGGGGTTCTTCAAGGACTACTTCTGAATAAATACCGGAAACGTTTACGAATAGCTGTCAAGGGGTTCAATGAAGACGTTCTATCAATTCAGAAGACATGGAGACAGGCTATGGAATCTTATATGGGATATTTCTGTCGTTATATTTGTTTTAGATTTGCTCATTCTAACTGAGCCCTTAAGCTACAGTAAACCTACATGTAATAGAAGAGTCTGTACTTAAAACGTTGAGCCAGTTTATATCGGATCCTGTTAAAGACTTTGAGAAGTTGTCAACTGATAAACTGTTTGACATAATATCCCAAACATTTTTACAGTTGACAACTTTATTATATCTTTCACTTGAATCTAGGTAATTGAGCTCGAAGTTAAAAAATTAGGAGGCTCCTTTATTAGAAGCTTTACGGTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>497 271 116 42 41 33</canonical_bands>
                <polymorphic_bands>768 116 42 41 33</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>268 227 165 155 41 39 37 23 20 13 12</canonical_bands>
                <polymorphic_bands>268 227 165 155 51 41 37 23 20 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTTTCTAAAGGAAACGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>ACCCCTTTTCATAAACGACTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CATTTTCTAAAGGAAACGAAGTTTCGTATTTCTAGGAAAATCAAAAGGGATTTTGAATCGAACTACAGACATAAATGTGATGATGACGTTTTTTTTGTTTTTCAGTGGTAAATTATTTAGAAGAAAAAGCTACAAATGATTTCTACATTAATTCCAAAATAAATTTGTATCTTCCTGGTCTTATTCCAAACACAATCGACGGAAACATGTACAAATAGACTCTACCATAGTCGTTTATGAAAAGGGGT</canonical_amplicon>
		<polymorphic_amplicon>CATTTTCTAAAGGAAACGAAGTTTCGTATTTCTAGGAAAATCAAAAGGGATTTTGAATCGAACTACAGACATAAATGTGATGATGACGTTTTTTTTGTTTTTCAGTGGTAAATTATTTAGAAGAAAAAGCTACAAATGATTTCTACATTARTTCCAAAATAAATTTGTATCTTCCTGGTCTTATTCCAAACACAATCGACGGAAACATGTACAAATAGACTCTACCATAGTCGTTTATGAAAAGGGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9406</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>430404</contig_pos>
        <strand>+</strand>
        <context>ACTACAGACA[A/T]AAATGTGATG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCGTATTTCTAGGAAAATCAAAAGGGATTTTGAATCGAACTACAGACA</left_flank>
        <right_flank>AAATGTGATGATGACGTTTTTTTTGTTTTTCAGTGGTAAATTATTTAGAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATATTTTTAAGATATCCAAAATTGGCGGGTACTGTATATCAATAATCGATTTTTGATTTTCAGCAGAAAATTATTGACTTGAGCTCTAAAAACTAGGTCAAAGTTGCCTGATTTTTAGGAAACTTTCAGGGAAATGTGGAACGTAAACATAACTACGTAAACATTTCGATATCTTGCACAGGAATAGAGACAGTGTGGGGCCCTTCTATTACAGGTTTTACGGTAGCCTCAGAAATTTCTCTTTGCAATTCTCATACATCTCTTTTCCTTCCGTCGTTTTCAATAATAATTCATCTCTCCATGATACCAGAATTTCACGAATCATCAATCAAATAATCAGTATTCATATATGTTTCTCGTTTTCCGAAACTTGCCTTTTCCAGAGAGACCACCCACAGTGTGGCACCACACTGTGCGATGAAATATGCATTTTCTAAAGGAAACGAAGTTTCGTATTTCTAGGAAAATCAAAAGGGATTTTGAATCGAACTACAGACATAAATGTGATGATGACGTTTTTTTTGTTTTTCAGTGGTAAATTATTTAGAAGAAAAAGCTACAAATGATTTCTACATTAATTCCAAAATAAATTTGTATCTTCCTGGTCTTATTCCAAACACAATCGACGGAAACATGTACAAATAGACTCTACCATAGTCGTTTATGAAAAGGGGTTCTTCAAGGACTACTTCTGAATAAATACCGGAAACGTTTACGAATAGCTGTCAAGGGGTTCAATGAAGACGTTCTATCAATTCAGAAGACATGGAGACAGGCTATGGAATCTTATATGGGATATTTCTGTCGTTATATTTGTTTTAGATTTGCTCATTCTAACTGAGCCCTTAAGCTACAGTAAACCTACATGTAATAGAAGAGTCTGTACTTAAAACGTTGAGCCAGTTTATATCGGATCCTGTTAAAGACTTTGAGAAGTTGTCAACTGATAAACTGTTTGACATAATATCCCAAACATTTTTACAGTTGACAACTTTATTA</canonical>
            <polymorphic>TATATTTTTAAGATATCCAAAATTGGCGGGTACTGTATATCAATAATCGATTTTTGATTTTCAGCAGAAAATTATTGACTTGAGCTCTAAAAACTAGGTCAAAGTTGCCTGATTTTTAGGAAACTTTCAGGGAAATGTGGAACGTAAACATAACTACGTAAACATTTCGATATCTTGCACAGGAATAGAGACAGTGTGGGGCCCTTCTATTACAGGTTTTACGGTAGCCTCAGAAATTTCTCTTTGCAATTCTCATACATCTCTTTTCCTTCCGTCGTTTTCAATAATAATTCATCTCTCCATGATACCAGAATTTCACGAATCATCAATCAAATAATCAGTATTCATATATGTTTCTCGTTTTCCGAAACTTGCCTTTTCCAGAGAGACCACCCACAGTGTGGCACCACACTGTGCGATGAAATATGCATTTTCTAAAGGAAACGAAGTTTCGTATTTCTAGGAAAATCAAAAGGGATTTTGAATCGAACTACAGACAWAAATGTGATGATGACGTTTTTTTTGTTTTTCAGTGGTAAATTATTTAGAAGAAAAAGCTACAAATGATTTCTACATTAATTCCAAAATAAATTTGTATCTTCCTGGTCTTATTCCAAACACAATCGACGGAAACATGTACAAATAGACTCTACCATAGTCGTTTATGAAAAGGGGTTCTTCAAGGACTACTTCTGAATAAATACCGGAAACGTTTACGAATAGCTGTCAAGGGGTTCAATGAAGACGTTCTATCAATTCAGAAGACATGGAGACAGGCTATGGAATCTTATATGGGATATTTCTGTCGTTATATTTGTTTTAGATTTGCTCATTCTAACTGAGCCCTTAAGCTACAGTAAACCTACATGTAATAGAAGAGTCTGTACTTAAAACGTTGAGCCAGTTTATATCGGATCCTGTTAAAGACTTTGAGAAGTTGTCAACTGATAAACTGTTTGACATAATATCCCAAACATTTTTACAGTTGACAACTTTATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGAATCATCAATCAAATAATCA</pcr_primer_p1>
		<pcr_primer_p2>TCATTTGTAGCTTTTTCTTCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGAATCATCAATCAAATAATCAGTATTCATATATGTTTCTCGTTTTCCGAAACTTGCCTTTTCCAGAGAGACCACCCACAGTGTGGCACCACACTGTGCGATGAAATATGCATTTTCTAAAGGAAACGAAGTTTCGTATTTCTAGGAAAATCAAAAGGGATTTTGAATCGAACTACAGACATAAATGTGATGATGACGTTTTTTTTGTTTTTCAGTGGTAAATTATTTAGAAGAAAAAGCTACAAATGA</canonical_amplicon>
		<polymorphic_amplicon>ACGAATCATCAATCAAATAATCAGTATTCATATATGTTTCTCGTTTTCCGAAACTTGCCTTTTCCAGAGAGACCACCCACAGTGTGGCACCACACTGTGCGATGAAATATGCATTTTCTAAAGGAAACGAAGTTTCGTATTTCTAGGAAAATCAAAAGGGATTTTGAATCGAACTACAGACAWAAATGTGATGATGACGTTTTTTTTGTTTTTCAGTGGTAAATTATTTAGAAGAAAAAGCTACAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9407</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>487308</contig_pos>
        <strand>+</strand>
        <context>GGCGGAAATT[A/T]AAAAAGAACC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGGAAACATGGGGAAGAGACTACGCAATTAGGTTTTGTGGCGGAAATT</left_flank>
        <right_flank>AAAAAGAACCCAAAGAGGAAAGCGGCGTGTGCAAATCCGCTTAACACGTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCTCAGAAGTTGTATTTTTTCACATTTACTGTAGACCTTGTACTAATATGTAAATTCGAAACAAGTTCAAATAAATATACTGAAACTGTTAAAAAATAACTTTTCAGTTTCTAAGTGTTTAGATAATTTTTTGATGTTTTCTCGTTTAGCATTACTTCTTTTATGTTGCGACTTTAATATTGTTCCACAGAGCGCATTTTCGAATTTCAAAAAAATTTCCGATCCCCCAACAATCCCTTTTATTTTTTCCTTTGTACCGCCCATCGCCTTCTCATAACCCCATCAAATCTTCTTTCCTTTCTCCTCTCTAATAACTACAGTTTTCCCTTTTGACACCTGCCTGCAAATACTCCCATTTTTGCCTATCCCTATACTGTGACCATCTGTCAAGAATCTTCTTTCTCTTCTAAATGCATCTGCCACGTGTCATCATCACTTCTAGACTTGTTTGGAAACATGGGGAAGAGACTACGCAATTAGGTTTTGTGGCGGAAATTTAAAAAGAACCCAAAGAGGAAAGCGGCGTGTGCAAATCCGCTTAACACGTCATACTAATAAAAAATTGGGTGATTAAGGGAATAGAGGAGAGAGAGGTAATAAGCAATGAGCGGTGAGATCAGAAGAAAGAAGACTGTAGAATGGAAACAGAAGGCTTATTGGAGGTGAAAAAAGTAGAAGAGATGGTTTTTCGCTGATGAGTGATTCCTGCTTTGATGGATCTGGTATCTCTGGGCTATAAAGGAAATTTTATCGAGCTTTTTGGAATGAAGTCATTATGCCAATCAATTGATACCAGAAATCAGTTATCATTGAAACCGTGAATCGGAAAAATTCGTTCCTAGTTCTGAACAGGAATTGGCGGGATGAATTTTTCGGATTCTGTGCCTTTAAAAGTACAATACCCTTTACTCACTTTTTCTCTTGTAAATGAGATGTTTCATTCTGTAAAGTCCGATAAACCCATTCCAAAAATTCCCAATTTGTGTGGAACTATCGGA</canonical>
            <polymorphic>TATCTCAGAAGTTGTATTTTTTCACATTTACTGTAGACCTTGTACTAATATGTAAATTCGAAACAAGTTCAAATAAATATACTGAAACTGTTAAAAAATAACTTTTCAGTTTCTAAGTGTTTAGATAATTTTTTGATGTTTTCTCGTTTAGCATTACTTCTTTTATGTTGCGACTTTAATATTGTTCCACAGAGCGCATTTTCGAATTTCAAAAAAATTTCCGATCCCCCAACAATCCCTTTTATTTTTTCCTTTGTACCGCCCATCGCCTTCTCATAACCCCATCAAATCTTCTTTCCTTTCTCCTCTCTAATAACTACAGTTTTCCCTTTTGACACCTGCCTGCAAATACTCCCATTTTTGCCTATCCCTATACTGTGACCATCTGTCAAGAATCTTCTTTCTCTTCTAAATGCATCTGCCACGTGTCATCATCACTTCTAGACTTGTTTGGAAACATGGGGAAGAGACTACGCAATTAGGTTTTGTGGCGGAAATTWAAAAAGAACCCAAAGAGGAAAGCGGCGTGTGCAAATCCGCTTAACACGTCATACTAATAAAAAATTGGGTGATTAAGGGAATAGAGGAGAGAGAGGTAATAAGCAATGAGCGGTGAGATCAGAAGAAAGAAGACTGTAGAATGGAAACAGAAGGCTTATTGGAGGTGAAAAAAGTAGAAGAGATGGTTTTTCGCTGATGAGTGATTCCTGCTTTGATGGATCTGGTATCTCTGGGCTATAAAGGAAATTTTATCGAGCTTTTTGGAATGAAGTCATTATGCCAATCAATTGATACCAGAAATCAGTTATCATTGAAACCGTGAATCGGAAAAATTCGTTCCTAGTTCTGAACAGGAATTGGCGGGATGAATTTTTCGGATTCTGTGCCTTTAAAAGTACAATACCCTTTACTCACTTTTTCTCTTGTAAATGAGATGTTTCATTCTGTAAAGTCCGATAAACCCATTCCAAAAATTCCCAATTTGTGTGGAACTATCGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>280 250 150 104 86 54 37 28 11</canonical_bands>
                <polymorphic_bands>530 150 104 86 54 37 28 11</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 391 109</canonical_bands>
                <polymorphic_bands>891 109</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>323 317 110 91 85 42 32</canonical_bands>
                <polymorphic_bands>365 317 110 91 85 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTGCCTATCCCTATACTGT</pcr_primer_p1>
		<pcr_primer_p2>TGCTTATTACCTCTCTCTCCTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTGCCTATCCCTATACTGTGACCATCTGTCAAGAATCTTCTTTCTCTTCTAAATGCATCTGCCACGTGTCATCATCACTTCTAGACTTGTTTGGAAACATGGGGAAGAGACTACGCAATTAGGTTTTGTGGCGGAAATTTAAAAAGAACCCAAAGAGGAAAGCGGCGTGTGCAAATCCGCTTAACACGTCATACTAATAAAAAATTGGGTGATTAAGGGAATAGAGGAGAGAGAGGTAATAAGCA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTGCCTATCCCTATACTGTGACCATCTGTCAAGAATCTTCTTTCTCTTCTAAATGCATCTGCCACGTGTCATCATCACTTCTAGACTTGTTTGGAAACATGGGGAAGAGACTACGCAATTAGGTTTTGTGGCGGAAATTWAAAAAGAACCCAAAGAGGAAAGCGGCGTGTGCAAATCCGCTTAACACGTCATACTAATAAAAAATTGGGTGATTAAGGGAATAGAGGAGAGAGAGGTAATAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9408</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>487472</contig_pos>
        <strand>+</strand>
        <context>GCTTATTGGA[G/T]KTGAAAAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAGATCAGAAGAAAGAAGACTGTAGAATGGAAACAGAAGGCTTATTGGA</left_flank>
        <right_flank>GTGAAAAAAGTAGAAGAGATGGTTTTTCGCTGATGAGTGATTCCTGCTTT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTTGCGACTTTAATATTGTTCCACAGAGCGCATTTTCGAATTTCAAAAAAATTTCCGATCCCCCAACAATCCCTTTTATTTTTTCCTTTGTACCGCCCATCGCCTTCTCATAACCCCATCAAATCTTCTTTCCTTTCTCCTCTCTAATAACTACAGTTTTCCCTTTTGACACCTGCCTGCAAATACTCCCATTTTTGCCTATCCCTATACTGTGACCATCTGTCAAGAATCTTCTTTCTCTTCTAAATGCATCTGCCACGTGTCATCATCACTTCTAGACTTGTTTGGAAACATGGGGAAGAGACTACGCAATTAGGTTTTGTGGCGGAAATTTAAAAAGAACCCAAAGAGGAAAGCGGCGTGTGCAAATCCGCTTAACACGTCATACTAATAAAAAATTGGGTGATTAAGGGAATAGAGGAGAGAGAGGTAATAAGCAATGAGCGGTGAGATCAGAAGAAAGAAGACTGTAGAATGGAAACAGAAGGCTTATTGGAGGTGAAAAAAGTAGAAGAGATGGTTTTTCGCTGATGAGTGATTCCTGCTTTGATGGATCTGGTATCTCTGGGCTATAAAGGAAATTTTATCGAGCTTTTTGGAATGAAGTCATTATGCCAATCAATTGATACCAGAAATCAGTTATCATTGAAACCGTGAATCGGAAAAATTCGTTCCTAGTTCTGAACAGGAATTGGCGGGATGAATTTTTCGGATTCTGTGCCTTTAAAAGTACAATACCCTTTACTCACTTTTTCTCTTGTAAATGAGATGTTTCATTCTGTAAAGTCCGATAAACCCATTCCAAAAATTCCCAATTTGTGTGGAACTATCGGAATTCTAACAGCCGTTCCGCACAACACTGGTTTGAAGTGATACGGTAAATAAAAAAAAAATTTACTGATAAAAAAGAATAAGGTAATTATTTTTTCATCTTATTTCAAATTCACGATATTGATGAAACTGTAAAATCTCGGGCACCCCAAAAATTACTGTTTCGT</canonical>
            <polymorphic>ATGTTGCGACTTTAATATTGTTCCACAGAGCGCATTTTCGAATTTCAAAAAAATTTCCGATCCCCCAACAATCCCTTTTATTTTTTCCTTTGTACCGCCCATCGCCTTCTCATAACCCCATCAAATCTTCTTTCCTTTCTCCTCTCTAATAACTACAGTTTTCCCTTTTGACACCTGCCTGCAAATACTCCCATTTTTGCCTATCCCTATACTGTGACCATCTGTCAAGAATCTTCTTTCTCTTCTAAATGCATCTGCCACGTGTCATCATCACTTCTAGACTTGTTTGGAAACATGGGGAAGAGACTACGCAATTAGGTTTTGTGGCGGAAATTTAAAAAGAACCCAAAGAGGAAAGCGGCGTGTGCAAATCCGCTTAACACGTCATACTAATAAAAAATTGGGTGATTAAGGGAATAGAGGAGAGAGAGGTAATAAGCAATGAGCGGTGAGATCAGAAGAAAGAAGACTGTAGAATGGAAACAGAAGGCTTATTGGAKGTGAAAAAAGTAGAAGAGATGGTTTTTCGCTGATGAGTGATTCCTGCTTTGATGGATCTGGTATCTCTGGGCTATAAAGGAAATTTTATCGAGCTTTTTGGAATGAAGTCATTATGCCAATCAATTGATACCAGAAATCAGTTATCATTGAAACCGTGAATCGGAAAAATTCGTTCCTAGTTCTGAACAGGAATTGGCGGGATGAATTTTTCGGATTCTGTGCCTTTAAAAGTACAATACCCTTTACTCACTTTTTCTCTTGTAAATGAGATGTTTCATTCTGTAAAGTCCGATAAACCCATTCCAAAAATTCCCAATTTGTGTGGAACTATCGGAATTCTAACAGCCGTTCCGCACAACACTGGTTTGAAGTGATACGGTAAATAAAAAAAAAATTTACTGATAAAAAAGAATAAGGTAATTATTTTTTCATCTTATTTCAAATTCACGATATTGATGAAACTGTAAAATCTCGGGCACCCCAAAAATTACTGTTTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGATTAAGGGAATAGAGGAGAG</pcr_primer_p1>
		<pcr_primer_p2>TTCAATGATAACTGATTTCTGGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTGATTAAGGGAATAGAGGAGAGAGAGGTAATAAGCAATGAGCGGTGAGATCAGAAGAAAGAAGACTGTAGAATGGAAACAGAAGGCTTATTGGAGGTGAAAAAAGTAGAAGAGATGGTTTTTCGCTGATGAGTGATTCCTGCTTTGATGGATCTGGTATCTCTGGGCTATAAAGGAAATTTTATCGAGCTTTTTGGAATGAAGTCATTATGCCAATCAATTGATACCAGAAATCAGTTATCATTGAA</canonical_amplicon>
		<polymorphic_amplicon>GTGATTAAGGGAATAGAGGAGAGAGAGGTAATAAGCAATGAGCGGTGAGATCAGAAGAAAGAAGACTGTAGAATGGAAACAGAAGGCTTATTGGAKGTGAAAAAAGTAGAAGAGATGGTTTTTCGCTGATGAGTGATTCCTGCTTTGATGGATCTGGTATCTCTGGGCTATAAAGGAAATTTTATCGAGCTTTTTGGAATGAAGTCATTATGCCAATCAATTGATACCAGAAATCAGTTATCATTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9409</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>487473</contig_pos>
        <strand>+</strand>
        <context>CTTATTGGAK[G/T]TGAAAAAAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAGATCAGAAGAAAGAAGACTGTAGAATGGAAACAGAAGGCTTATTGGAG</left_flank>
        <right_flank>TGAAAAAAGTAGAAGAGATGGTTTTTCGCTGATGAGTGATTCCTGCTTTG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTGCGACTTTAATATTGTTCCACAGAGCGCATTTTCGAATTTCAAAAAAATTTCCGATCCCCCAACAATCCCTTTTATTTTTTCCTTTGTACCGCCCATCGCCTTCTCATAACCCCATCAAATCTTCTTTCCTTTCTCCTCTCTAATAACTACAGTTTTCCCTTTTGACACCTGCCTGCAAATACTCCCATTTTTGCCTATCCCTATACTGTGACCATCTGTCAAGAATCTTCTTTCTCTTCTAAATGCATCTGCCACGTGTCATCATCACTTCTAGACTTGTTTGGAAACATGGGGAAGAGACTACGCAATTAGGTTTTGTGGCGGAAATTTAAAAAGAACCCAAAGAGGAAAGCGGCGTGTGCAAATCCGCTTAACACGTCATACTAATAAAAAATTGGGTGATTAAGGGAATAGAGGAGAGAGAGGTAATAAGCAATGAGCGGTGAGATCAGAAGAAAGAAGACTGTAGAATGGAAACAGAAGGCTTATTGGAGGTGAAAAAAGTAGAAGAGATGGTTTTTCGCTGATGAGTGATTCCTGCTTTGATGGATCTGGTATCTCTGGGCTATAAAGGAAATTTTATCGAGCTTTTTGGAATGAAGTCATTATGCCAATCAATTGATACCAGAAATCAGTTATCATTGAAACCGTGAATCGGAAAAATTCGTTCCTAGTTCTGAACAGGAATTGGCGGGATGAATTTTTCGGATTCTGTGCCTTTAAAAGTACAATACCCTTTACTCACTTTTTCTCTTGTAAATGAGATGTTTCATTCTGTAAAGTCCGATAAACCCATTCCAAAAATTCCCAATTTGTGTGGAACTATCGGAATTCTAACAGCCGTTCCGCACAACACTGGTTTGAAGTGATACGGTAAATAAAAAAAAAATTTACTGATAAAAAAGAATAAGGTAATTATTTTTTCATCTTATTTCAAATTCACGATATTGATGAAACTGTAAAATCTCGGGCACCCCAAAAATTACTGTTTCGTC</canonical>
            <polymorphic>TGTTGCGACTTTAATATTGTTCCACAGAGCGCATTTTCGAATTTCAAAAAAATTTCCGATCCCCCAACAATCCCTTTTATTTTTTCCTTTGTACCGCCCATCGCCTTCTCATAACCCCATCAAATCTTCTTTCCTTTCTCCTCTCTAATAACTACAGTTTTCCCTTTTGACACCTGCCTGCAAATACTCCCATTTTTGCCTATCCCTATACTGTGACCATCTGTCAAGAATCTTCTTTCTCTTCTAAATGCATCTGCCACGTGTCATCATCACTTCTAGACTTGTTTGGAAACATGGGGAAGAGACTACGCAATTAGGTTTTGTGGCGGAAATTTAAAAAGAACCCAAAGAGGAAAGCGGCGTGTGCAAATCCGCTTAACACGTCATACTAATAAAAAATTGGGTGATTAAGGGAATAGAGGAGAGAGAGGTAATAAGCAATGAGCGGTGAGATCAGAAGAAAGAAGACTGTAGAATGGAAACAGAAGGCTTATTGGAGKTGAAAAAAGTAGAAGAGATGGTTTTTCGCTGATGAGTGATTCCTGCTTTGATGGATCTGGTATCTCTGGGCTATAAAGGAAATTTTATCGAGCTTTTTGGAATGAAGTCATTATGCCAATCAATTGATACCAGAAATCAGTTATCATTGAAACCGTGAATCGGAAAAATTCGTTCCTAGTTCTGAACAGGAATTGGCGGGATGAATTTTTCGGATTCTGTGCCTTTAAAAGTACAATACCCTTTACTCACTTTTTCTCTTGTAAATGAGATGTTTCATTCTGTAAAGTCCGATAAACCCATTCCAAAAATTCCCAATTTGTGTGGAACTATCGGAATTCTAACAGCCGTTCCGCACAACACTGGTTTGAAGTGATACGGTAAATAAAAAAAAAATTTACTGATAAAAAAGAATAAGGTAATTATTTTTTCATCTTATTTCAAATTCACGATATTGATGAAACTGTAAAATCTCGGGCACCCCAAAAATTACTGTTTCGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>148 119 74 73 64 53 52 44 44 43 39 36 31 31 28 25 24 22 15 13 9 5 4 2 2</canonical_bands>
                <polymorphic_bands>148 119 88 74 73 64 53 44 44 43 39 31 31 28 25 24 22 15 13 9 5 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGATTAAGGGAATAGAGGAGAG</pcr_primer_p1>
		<pcr_primer_p2>TTCAATGATAACTGATTTCTGGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTGATTAAGGGAATAGAGGAGAGAGAGGTAATAAGCAATGAGCGGTGAGATCAGAAGAAAGAAGACTGTAGAATGGAAACAGAAGGCTTATTGGAGGTGAAAAAAGTAGAAGAGATGGTTTTTCGCTGATGAGTGATTCCTGCTTTGATGGATCTGGTATCTCTGGGCTATAAAGGAAATTTTATCGAGCTTTTTGGAATGAAGTCATTATGCCAATCAATTGATACCAGAAATCAGTTATCATTGAA</canonical_amplicon>
		<polymorphic_amplicon>GTGATTAAGGGAATAGAGGAGAGAGAGGTAATAAGCAATGAGCGGTGAGATCAGAAGAAAGAAGACTGTAGAATGGAAACAGAAGGCTTATTGGAGKTGAAAAAAGTAGAAGAGATGGTTTTTCGCTGATGAGTGATTCCTGCTTTGATGGATCTGGTATCTCTGGGCTATAAAGGAAATTTTATCGAGCTTTTTGGAATGAAGTCATTATGCCAATCAATTGATACCAGAAATCAGTTATCATTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9465</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>543259</contig_pos>
        <strand>+</strand>
        <context>CGGAGAGTTC[A/G]GCTCCTGTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAGGAACCACTCGAGAGAAAAATGCAAAACGTGGCTTCTCGGAGAGTTC</left_flank>
        <right_flank>GCTCCTGTTGAACTGTAGCTCACTTGGGGGATCTGGAATATCAATATTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTACAGCGGTCGTCCTCGCCTTTATGTATGCAATCAGGCGCCCGCTCCCGTTTCGCCCACGTGGCTCAGTCGGTAGCGGCGCCGCACCTTGAATACTCCCCTCGACAAGTTCAACTCTTAAATAAAATTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAGAAAAATAATTGTGTTTTATTCGAATTTCCACACACGTACCTGAAATTCTTCTCGGTCCACCTCCTCGAAATCTTCTGAACATCTCCATCAATACATATTCCATTTTCAGCGGCAGCCGCTCGAAACGAATCCATTCCTCGTTCTCCATACGATCCCGTATCAGCAATAGCGTGCACATAAGTCCATTCTAGTGCACCGATCTGCAAAAATGTGTAAATGAAAGAGATTAGGGGGAATGAAGACACACCACTCGAGCCATCACTTGTGCTTGCAGATTATCCGGAGGAACCACTCGAGAGAAAAATGCAAAACGTGGCTTCTCGGAGAGTTCAGCTCCTGTTGAACTGTAGCTCACTTGGGGGATCTGGAATATCAATATTTCTGTTTCGGGAAGTTGTGAAGAGTAAGCGTTGGGAGCGTTTAGTTGGTAACAAAATAGGAACGGTTCGCTTGCAAACCAACAAGGTAGTAAAAAACTATTCTCACCTTGAACAACTGCAACATGGAAGCAACCATAACACTGACTTGACTTCCAGCTGCTCCAACAACTGCAACCACTGGTTGTCGTGTATATGATCCAGTTGATCCATCTGCACATGTCACACCATCTCCATTCGACATTACAGATTTGATGAATTCCAGTGTCTGTTCCAGGGCATAGCTGTCTACGGAGCTGCAAGGTAATTGAGTTGTCAGATACTTGAACGAACACTTTCTCATTGTTCATGTATGTATTTAAAAACGCGGGGATACCGTGTTTTTTAATATCTCCAAAAACACATTCCAGACAGTCTCAAGGATCTATGTTTTGGAATTCTCATGACTGTCTTAG</canonical>
            <polymorphic>CGTACAGCGGTCGTCCTCGCCTTTATGTATGCAATCAGGCGCCCGCTCCCGTTTCGCCCACGTGGCTCAGTCGGTAGCGGCGCCGCACCTTGAATACTCCCCTCGACAAGTTCAACTCTTAAATAAAATTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAGAAAAATAATTGTGTTTTATTCGAATTTCCACACACGTACCTGAAATTCTTCTCGGTCCACCTCCTCGAAATCTTCTGAACATCTCCATCAATACATATTCCATTTTCAGCGGCAGCCGCTCGAAACGAATCCATTCCTCGTTCTCCATACGATCCCGTATCAGCAATAGCGTGCACATAAGTCCATTCTAGTGCACCGATCTGCAAAAATGTGTAAATGAAAGAGATTAGGGGGAATGAAGACACACCACTCGAGCCATCACTTGTGCTTGCAGATTATCCGGAGGAACCACTCGAGAGAAAAATGCAAAACGTGGCTTCTCGGAGAGTTCRGCTCCTGTTGAACTGTAGCTCACTTGGGGGATCTGGAATATCAATATTTCTGTTTCGGGAAGTTGTGAAGAGTAAGCGTTGGGAGCGTTTAGTTGGTAACAAAATAGGAACGGTTCGCTTGCAAACCAACAAGGTAGTAAAAAACTATTCTCACCTTGAACAACTGCAACATGGAAGCAACCATAACACTGACTTGACTTCCAGCTGCTCCAACAACTGCAACCACTGGTTGTCGTGTATATGATCCAGTTGATCCATCTGCACATGTCACACCATCTCCATTCGACATTACAGATTTGATGAATTCCAGTGTCTGTTCCAGGGCATAGCTGTCTACGGAGCTGCAAGGTAATTGAGTTGTCAGATACTTGAACGAACACTTTCTCATTGTTCATGTATGTATTTAAAAACGCGGGGATACCGTGTTTTTTAATATCTCCAAAAACACATTCCAGACAGTCTCAAGGATCTATGTTTTGGAATTCTCATGACTGTCTTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>501 186 159 125 17 12</canonical_bands>
                <polymorphic_bands>518 186 159 125 12</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGNNNCTG</site>
                <isoschizomers>
                    <enzyme>AlwNI</enzyme>
                    <enzyme>CaiI</enzyme>
                </isoschizomers>
                <canonical_bands>504 309 187</canonical_bands>
                <polymorphic_bands>813 187</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>218 186 159 140 125 65 61 17 17 12</canonical_bands>
                <polymorphic_bands>218 186 159 140 125 65 61 34 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCACTTGTGCTTGCAGATTA</pcr_primer_p1>
		<pcr_primer_p2>CAGTTGTTCAAGGTGAGAATAGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATCACTTGTGCTTGCAGATTATCCGGAGGAACCACTCGAGAGAAAAATGCAAAACGTGGCTTCTCGGAGAGTTCAGCTCCTGTTGAACTGTAGCTCACTTGGGGGATCTGGAATATCAATATTTCTGTTTCGGGAAGTTGTGAAGAGTAAGCGTTGGGAGCGTTTAGTTGGTAACAAAATAGGAACGGTTCGCTTGCAAACCAACAAGGTAGTAAAAAACTATTCTCACCTTGAACAACTG</canonical_amplicon>
		<polymorphic_amplicon>ATCACTTGTGCTTGCAGATTATCCGGAGGAACCACTCGAGAGAAAAATGCAAAACGTGGCTTCTCGGAGAGTTCRGCTCCTGTTGAACTGTAGCTCACTTGGGGGATCTGGAATATCAATATTTCTGTTTCGGGAAGTTGTGAAGAGTAAGCGTTGGGAGCGTTTAGTTGGTAACAAAATAGGAACGGTTCGCTTGCAAACCAACAAGGTAGTAAAAAACTATTCTCACCTTGAACAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9466</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>543318</contig_pos>
        <strand>+</strand>
        <context>TCTGTTTCGG[C/G]AAGTTGTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGAACTGTAGCTCACTTGGGGGATCTGGAATATCAATATTTCTGTTTCGG</left_flank>
        <right_flank>AAGTTGTGAAGAGTAAGCGTTGGGAGCGTTTAGTTGGTAACAAAATAGGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGTGGCTCAGTCGGTAGCGGCGCCGCACCTTGAATACTCCCCTCGACAAGTTCAACTCTTAAATAAAATTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAGAAAAATAATTGTGTTTTATTCGAATTTCCACACACGTACCTGAAATTCTTCTCGGTCCACCTCCTCGAAATCTTCTGAACATCTCCATCAATACATATTCCATTTTCAGCGGCAGCCGCTCGAAACGAATCCATTCCTCGTTCTCCATACGATCCCGTATCAGCAATAGCGTGCACATAAGTCCATTCTAGTGCACCGATCTGCAAAAATGTGTAAATGAAAGAGATTAGGGGGAATGAAGACACACCACTCGAGCCATCACTTGTGCTTGCAGATTATCCGGAGGAACCACTCGAGAGAAAAATGCAAAACGTGGCTTCTCGGAGAGTTCAGCTCCTGTTGAACTGTAGCTCACTTGGGGGATCTGGAATATCAATATTTCTGTTTCGGGAAGTTGTGAAGAGTAAGCGTTGGGAGCGTTTAGTTGGTAACAAAATAGGAACGGTTCGCTTGCAAACCAACAAGGTAGTAAAAAACTATTCTCACCTTGAACAACTGCAACATGGAAGCAACCATAACACTGACTTGACTTCCAGCTGCTCCAACAACTGCAACCACTGGTTGTCGTGTATATGATCCAGTTGATCCATCTGCACATGTCACACCATCTCCATTCGACATTACAGATTTGATGAATTCCAGTGTCTGTTCCAGGGCATAGCTGTCTACGGAGCTGCAAGGTAATTGAGTTGTCAGATACTTGAACGAACACTTTCTCATTGTTCATGTATGTATTTAAAAACGCGGGGATACCGTGTTTTTTAATATCTCCAAAAACACATTCCAGACAGTCTCAAGGATCTATGTTTTGGAATTCTCATGACTGTCTTAGTCCTTTGAAACCCTTACTGTCCGTGGCGTTAAATGAACACATGAACACATGTGTCAGTT</canonical>
            <polymorphic>ACGTGGCTCAGTCGGTAGCGGCGCCGCACCTTGAATACTCCCCTCGACAAGTTCAACTCTTAAATAAAATTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAGAAAAATAATTGTGTTTTATTCGAATTTCCACACACGTACCTGAAATTCTTCTCGGTCCACCTCCTCGAAATCTTCTGAACATCTCCATCAATACATATTCCATTTTCAGCGGCAGCCGCTCGAAACGAATCCATTCCTCGTTCTCCATACGATCCCGTATCAGCAATAGCGTGCACATAAGTCCATTCTAGTGCACCGATCTGCAAAAATGTGTAAATGAAAGAGATTAGGGGGAATGAAGACACACCACTCGAGCCATCACTTGTGCTTGCAGATTATCCGGAGGAACCACTCGAGAGAAAAATGCAAAACGTGGCTTCTCGGAGAGTTCAGCTCCTGTTGAACTGTAGCTCACTTGGGGGATCTGGAATATCAATATTTCTGTTTCGGSAAGTTGTGAAGAGTAAGCGTTGGGAGCGTTTAGTTGGTAACAAAATAGGAACGGTTCGCTTGCAAACCAACAAGGTAGTAAAAAACTATTCTCACCTTGAACAACTGCAACATGGAAGCAACCATAACACTGACTTGACTTCCAGCTGCTCCAACAACTGCAACCACTGGTTGTCGTGTATATGATCCAGTTGATCCATCTGCACATGTCACACCATCTCCATTCGACATTACAGATTTGATGAATTCCAGTGTCTGTTCCAGGGCATAGCTGTCTACGGAGCTGCAAGGTAATTGAGTTGTCAGATACTTGAACGAACACTTTCTCATTGTTCATGTATGTATTTAAAAACGCGGGGATACCGTGTTTTTTAATATCTCCAAAAACACATTCCAGACAGTCTCAAGGATCTATGTTTTGGAATTCTCATGACTGTCTTAGTCCTTTGAAACCCTTACTGTCCGTGGCGTTAAATGAACACATGAACACATGTGTCAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>396 317 72 72 71 35 23 14</canonical_bands>
                <polymorphic_bands>419 317 72 72 71 35 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCACTTGTGCTTGCAGATTA</pcr_primer_p1>
		<pcr_primer_p2>CAGTTGTTCAAGGTGAGAATAGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATCACTTGTGCTTGCAGATTATCCGGAGGAACCACTCGAGAGAAAAATGCAAAACGTGGCTTCTCGGAGAGTTCAGCTCCTGTTGAACTGTAGCTCACTTGGGGGATCTGGAATATCAATATTTCTGTTTCGGGAAGTTGTGAAGAGTAAGCGTTGGGAGCGTTTAGTTGGTAACAAAATAGGAACGGTTCGCTTGCAAACCAACAAGGTAGTAAAAAACTATTCTCACCTTGAACAACTG</canonical_amplicon>
		<polymorphic_amplicon>ATCACTTGTGCTTGCAGATTATCCGGAGGAACCACTCGAGAGAAAAATGCAAAACGTGGCTTCTCGGAGAGTTCAGCTCCTGTTGAACTGTAGCTCACTTGGGGGATCTGGAATATCAATATTTCTGTTTCGGSAAGTTGTGAAGAGTAAGCGTTGGGAGCGTTTAGTTGGTAACAAAATAGGAACGGTTCGCTTGCAAACCAACAAGGTAGTAAAAAACTATTCTCACCTTGAACAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9467</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>543374</contig_pos>
        <strand>+</strand>
        <context>TAGGAACGGT[C/T]CGCTTGCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGAAGAGTAAGCGTTGGGAGCGTTTAGTTGGTAACAAAATAGGAACGGT</left_flank>
        <right_flank>CGCTTGCAAACCAACAAGGTAGTAAAAAACTATTCTCACCTTGAACAACT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTTAAATAAAATTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAGAAAAATAATTGTGTTTTATTCGAATTTCCACACACGTACCTGAAATTCTTCTCGGTCCACCTCCTCGAAATCTTCTGAACATCTCCATCAATACATATTCCATTTTCAGCGGCAGCCGCTCGAAACGAATCCATTCCTCGTTCTCCATACGATCCCGTATCAGCAATAGCGTGCACATAAGTCCATTCTAGTGCACCGATCTGCAAAAATGTGTAAATGAAAGAGATTAGGGGGAATGAAGACACACCACTCGAGCCATCACTTGTGCTTGCAGATTATCCGGAGGAACCACTCGAGAGAAAAATGCAAAACGTGGCTTCTCGGAGAGTTCAGCTCCTGTTGAACTGTAGCTCACTTGGGGGATCTGGAATATCAATATTTCTGTTTCGGGAAGTTGTGAAGAGTAAGCGTTGGGAGCGTTTAGTTGGTAACAAAATAGGAACGGTTCGCTTGCAAACCAACAAGGTAGTAAAAAACTATTCTCACCTTGAACAACTGCAACATGGAAGCAACCATAACACTGACTTGACTTCCAGCTGCTCCAACAACTGCAACCACTGGTTGTCGTGTATATGATCCAGTTGATCCATCTGCACATGTCACACCATCTCCATTCGACATTACAGATTTGATGAATTCCAGTGTCTGTTCCAGGGCATAGCTGTCTACGGAGCTGCAAGGTAATTGAGTTGTCAGATACTTGAACGAACACTTTCTCATTGTTCATGTATGTATTTAAAAACGCGGGGATACCGTGTTTTTTAATATCTCCAAAAACACATTCCAGACAGTCTCAAGGATCTATGTTTTGGAATTCTCATGACTGTCTTAGTCCTTTGAAACCCTTACTGTCCGTGGCGTTAAATGAACACATGAACACATGTGTCAGTTTAATATAACATTTTTTAGCGTTTTGAAACTGAAAAAAATGCATTCAATCATTTTCA</canonical>
            <polymorphic>CTCTTAAATAAAATTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAGAAAAATAATTGTGTTTTATTCGAATTTCCACACACGTACCTGAAATTCTTCTCGGTCCACCTCCTCGAAATCTTCTGAACATCTCCATCAATACATATTCCATTTTCAGCGGCAGCCGCTCGAAACGAATCCATTCCTCGTTCTCCATACGATCCCGTATCAGCAATAGCGTGCACATAAGTCCATTCTAGTGCACCGATCTGCAAAAATGTGTAAATGAAAGAGATTAGGGGGAATGAAGACACACCACTCGAGCCATCACTTGTGCTTGCAGATTATCCGGAGGAACCACTCGAGAGAAAAATGCAAAACGTGGCTTCTCGGAGAGTTCAGCTCCTGTTGAACTGTAGCTCACTTGGGGGATCTGGAATATCAATATTTCTGTTTCGGGAAGTTGTGAAGAGTAAGCGTTGGGAGCGTTTAGTTGGTAACAAAATAGGAACGGTYCGCTTGCAAACCAACAAGGTAGTAAAAAACTATTCTCACCTTGAACAACTGCAACATGGAAGCAACCATAACACTGACTTGACTTCCAGCTGCTCCAACAACTGCAACCACTGGTTGTCGTGTATATGATCCAGTTGATCCATCTGCACATGTCACACCATCTCCATTCGACATTACAGATTTGATGAATTCCAGTGTCTGTTCCAGGGCATAGCTGTCTACGGAGCTGCAAGGTAATTGAGTTGTCAGATACTTGAACGAACACTTTCTCATTGTTCATGTATGTATTTAAAAACGCGGGGATACCGTGTTTTTTAATATCTCCAAAAACACATTCCAGACAGTCTCAAGGATCTATGTTTTGGAATTCTCATGACTGTCTTAGTCCTTTGAAACCCTTACTGTCCGTGGCGTTAAATGAACACATGAACACATGTGTCAGTTTAATATAACATTTTTTAGCGTTTTGAAACTGAAAAAAATGCATTCAATCATTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCACTCGAGAGAAAAATG</pcr_primer_p1>
		<pcr_primer_p2>TGGAAGTCAAGTCAGTGTTATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACCACTCGAGAGAAAAATGCAAAACGTGGCTTCTCGGAGAGTTCAGCTCCTGTTGAACTGTAGCTCACTTGGGGGATCTGGAATATCAATATTTCTGTTTCGGGAAGTTGTGAAGAGTAAGCGTTGGGAGCGTTTAGTTGGTAACAAAATAGGAACGGTTCGCTTGCAAACCAACAAGGTAGTAAAAAACTATTCTCACCTTGAACAACTGCAACATGGAAGCAACCATAACACTGACTTGACTTCCA</canonical_amplicon>
		<polymorphic_amplicon>AACCACTCGAGAGAAAAATGCAAAACGTGGCTTCTCGGAGAGTTCAGCTCCTGTTGAACTGTAGCTCACTTGGGGGATCTGGAATATCAATATTTCTGTTTCGGGAAGTTGTGAAGAGTAAGCGTTGGGAGCGTTTAGTTGGTAACAAAATAGGAACGGTYCGCTTGCAAACCAACAAGGTAGTAAAAAACTATTCTCACCTTGAACAACTGCAACATGGAAGCAACCATAACACTGACTTGACTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9468</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>543707</contig_pos>
        <strand>+</strand>
        <context>TCCAAAAACA[C/G]ATTCCAGACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATGTATTTAAAAACGCGGGGATACCGTGTTTTTTAATATCTCCAAAAACA</left_flank>
        <right_flank>ATTCCAGACAGTCTCAAGGATCTATGTTTTGGAATTCTCATGACTGTCTT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGAGGAACCACTCGAGAGAAAAATGCAAAACGTGGCTTCTCGGAGAGTTCAGCTCCTGTTGAACTGTAGCTCACTTGGGGGATCTGGAATATCAATATTTCTGTTTCGGGAAGTTGTGAAGAGTAAGCGTTGGGAGCGTTTAGTTGGTAACAAAATAGGAACGGTTCGCTTGCAAACCAACAAGGTAGTAAAAAACTATTCTCACCTTGAACAACTGCAACATGGAAGCAACCATAACACTGACTTGACTTCCAGCTGCTCCAACAACTGCAACCACTGGTTGTCGTGTATATGATCCAGTTGATCCATCTGCACATGTCACACCATCTCCATTCGACATTACAGATTTGATGAATTCCAGTGTCTGTTCCAGGGCATAGCTGTCTACGGAGCTGCAAGGTAATTGAGTTGTCAGATACTTGAACGAACACTTTCTCATTGTTCATGTATGTATTTAAAAACGCGGGGATACCGTGTTTTTTAATATCTCCAAAAACACATTCCAGACAGTCTCAAGGATCTATGTTTTGGAATTCTCATGACTGTCTTAGTCCTTTGAAACCCTTACTGTCCGTGGCGTTAAATGAACACATGAACACATGTGTCAGTTTAATATAACATTTTTTAGCGTTTTGAAACTGAAAAAAATGCATTCAATCATTTTCAGTCATAAAAAACTACTATGAATAAACCCGGTTTCAAACTTTGGAGAAATTTCCTGCATAATATATGAAAAACAGTGTGTACACTAGAAATTAAAACATGAATAATTTTGTAAAATAGGCCAAACTAAAGCTTCCAGAATGATAACTCGTCCCTAGAATACACACCAATGATAGTCTTTTGTTTTTGACAAATTCCACTCGAATCCCAACTTCTCACCACGTATCCAATATCTGTGCTCCTAAACTGGCTTGTGGCAACAGCTGCCTATCTCGATTGACTTTTTCCAATGCAAATAACATTGCCACCATTCTCTGCACTCCCTGATCTGCCTTG</canonical>
            <polymorphic>CGGAGGAACCACTCGAGAGAAAAATGCAAAACGTGGCTTCTCGGAGAGTTCAGCTCCTGTTGAACTGTAGCTCACTTGGGGGATCTGGAATATCAATATTTCTGTTTCGGGAAGTTGTGAAGAGTAAGCGTTGGGAGCGTTTAGTTGGTAACAAAATAGGAACGGTTCGCTTGCAAACCAACAAGGTAGTAAAAAACTATTCTCACCTTGAACAACTGCAACATGGAAGCAACCATAACACTGACTTGACTTCCAGCTGCTCCAACAACTGCAACCACTGGTTGTCGTGTATATGATCCAGTTGATCCATCTGCACATGTCACACCATCTCCATTCGACATTACAGATTTGATGAATTCCAGTGTCTGTTCCAGGGCATAGCTGTCTACGGAGCTGCAAGGTAATTGAGTTGTCAGATACTTGAACGAACACTTTCTCATTGTTCATGTATGTATTTAAAAACGCGGGGATACCGTGTTTTTTAATATCTCCAAAAACASATTCCAGACAGTCTCAAGGATCTATGTTTTGGAATTCTCATGACTGTCTTAGTCCTTTGAAACCCTTACTGTCCGTGGCGTTAAATGAACACATGAACACATGTGTCAGTTTAATATAACATTTTTTAGCGTTTTGAAACTGAAAAAAATGCATTCAATCATTTTCAGTCATAAAAAACTACTATGAATAAACCCGGTTTCAAACTTTGGAGAAATTTCCTGCATAATATATGAAAAACAGTGTGTACACTAGAAATTAAAACATGAATAATTTTGTAAAATAGGCCAAACTAAAGCTTCCAGAATGATAACTCGTCCCTAGAATACACACCAATGATAGTCTTTTGTTTTTGACAAATTCCACTCGAATCCCAACTTCTCACCACGTATCCAATATCTGTGCTCCTAAACTGGCTTGTGGCAACAGCTGCCTATCTCGATTGACTTTTTCCAATGCAAATAACATTGCCACCATTCTCTGCACTCCCTGATCTGCCTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>138 86 79 78 67 51 46 45 40 39 37 35 33 26 24 22 19 18 17 17 14 12 12 11 8 7 6 4 3 2 2 2</canonical_bands>
                <polymorphic_bands>138 100 86 79 67 51 46 45 40 39 37 35 33 26 24 19 18 17 17 14 12 12 11 8 7 6 4 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACTTTCTCATTGTTCATGTATGT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTATGACTGAAAATGATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CACTTTCTCATTGTTCATGTATGTATTTAAAAACGCGGGGATACCGTGTTTTTTAATATCTCCAAAAACACATTCCAGACAGTCTCAAGGATCTATGTTTTGGAATTCTCATGACTGTCTTAGTCCTTTGAAACCCTTACTGTCCGTGGCGTTAAATGAACACATGAACACATGTGTCAGTTTAATATAACATTTTTTAGCGTTTTGAAACTGAAAAAAATGCATTCAATCATTTTCAGTCATAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CACTTTCTCATTGTTCATGTATGTATTTAAAAACGCGGGGATACCGTGTTTTTTAATATCTCCAAAAACASATTCCAGACAGTCTCAAGGATCTATGTTTTGGAATTCTCATGACTGTCTTAGTCCTTTGAAACCCTTACTGTCCGTGGCGTTAAATGAACACATGAACACATGTGTCAGTTTAATATAACATTTTTTAGCGTTTTGAAACTGAAAAAAATGCATTCAATCATTTTCAGTCATAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9469</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>543785</contig_pos>
        <strand>+</strand>
        <context>ACTGTCCGTG[A/G]CGTTAAATGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGGAATTCTCATGACTGTCTTAGTCCTTTGAAACCCTTACTGTCCGTG</left_flank>
        <right_flank>CGTTAAATGAACACATGAACACATGTGTCAGTTTAATATAACATTTTTTA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGGATCTGGAATATCAATATTTCTGTTTCGGGAAGTTGTGAAGAGTAAGCGTTGGGAGCGTTTAGTTGGTAACAAAATAGGAACGGTTCGCTTGCAAACCAACAAGGTAGTAAAAAACTATTCTCACCTTGAACAACTGCAACATGGAAGCAACCATAACACTGACTTGACTTCCAGCTGCTCCAACAACTGCAACCACTGGTTGTCGTGTATATGATCCAGTTGATCCATCTGCACATGTCACACCATCTCCATTCGACATTACAGATTTGATGAATTCCAGTGTCTGTTCCAGGGCATAGCTGTCTACGGAGCTGCAAGGTAATTGAGTTGTCAGATACTTGAACGAACACTTTCTCATTGTTCATGTATGTATTTAAAAACGCGGGGATACCGTGTTTTTTAATATCTCCAAAAACACATTCCAGACAGTCTCAAGGATCTATGTTTTGGAATTCTCATGACTGTCTTAGTCCTTTGAAACCCTTACTGTCCGTGGCGTTAAATGAACACATGAACACATGTGTCAGTTTAATATAACATTTTTTAGCGTTTTGAAACTGAAAAAAATGCATTCAATCATTTTCAGTCATAAAAAACTACTATGAATAAACCCGGTTTCAAACTTTGGAGAAATTTCCTGCATAATATATGAAAAACAGTGTGTACACTAGAAATTAAAACATGAATAATTTTGTAAAATAGGCCAAACTAAAGCTTCCAGAATGATAACTCGTCCCTAGAATACACACCAATGATAGTCTTTTGTTTTTGACAAATTCCACTCGAATCCCAACTTCTCACCACGTATCCAATATCTGTGCTCCTAAACTGGCTTGTGGCAACAGCTGCCTATCTCGATTGACTTTTTCCAATGCAAATAACATTGCCACCATTCTCTGCACTCCCTGATCTGCCTTGATTTTTCCACACTGATGTGATGCATTTCGACCGGCTTCATGAATTGGAAATAGTCCTCCAAGGACAATTTGTCCGGGT</canonical>
            <polymorphic>GGGGATCTGGAATATCAATATTTCTGTTTCGGGAAGTTGTGAAGAGTAAGCGTTGGGAGCGTTTAGTTGGTAACAAAATAGGAACGGTTCGCTTGCAAACCAACAAGGTAGTAAAAAACTATTCTCACCTTGAACAACTGCAACATGGAAGCAACCATAACACTGACTTGACTTCCAGCTGCTCCAACAACTGCAACCACTGGTTGTCGTGTATATGATCCAGTTGATCCATCTGCACATGTCACACCATCTCCATTCGACATTACAGATTTGATGAATTCCAGTGTCTGTTCCAGGGCATAGCTGTCTACGGAGCTGCAAGGTAATTGAGTTGTCAGATACTTGAACGAACACTTTCTCATTGTTCATGTATGTATTTAAAAACGCGGGGATACCGTGTTTTTTAATATCTCCAAAAACACATTCCAGACAGTCTCAAGGATCTATGTTTTGGAATTCTCATGACTGTCTTAGTCCTTTGAAACCCTTACTGTCCGTGRCGTTAAATGAACACATGAACACATGTGTCAGTTTAATATAACATTTTTTAGCGTTTTGAAACTGAAAAAAATGCATTCAATCATTTTCAGTCATAAAAAACTACTATGAATAAACCCGGTTTCAAACTTTGGAGAAATTTCCTGCATAATATATGAAAAACAGTGTGTACACTAGAAATTAAAACATGAATAATTTTGTAAAATAGGCCAAACTAAAGCTTCCAGAATGATAACTCGTCCCTAGAATACACACCAATGATAGTCTTTTGTTTTTGACAAATTCCACTCGAATCCCAACTTCTCACCACGTATCCAATATCTGTGCTCCTAAACTGGCTTGTGGCAACAGCTGCCTATCTCGATTGACTTTTTCCAATGCAAATAACATTGCCACCATTCTCTGCACTCCCTGATCTGCCTTGATTTTTCCACACTGATGTGATGCATTTCGACCGGCTTCATGAATTGGAAATAGTCCTCCAAGGACAATTTGTCCGGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>485 293 202 20</canonical_bands>
                <polymorphic_bands>687 293 20</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGACAGTCTCAAGGATCTATGT</pcr_primer_p1>
		<pcr_primer_p2>TTCTAGTGTACACACTGTTTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAGACAGTCTCAAGGATCTATGTTTTGGAATTCTCATGACTGTCTTAGTCCTTTGAAACCCTTACTGTCCGTGGCGTTAAATGAACACATGAACACATGTGTCAGTTTAATATAACATTTTTTAGCGTTTTGAAACTGAAAAAAATGCATTCAATCATTTTCAGTCATAAAAAACTACTATGAATAAACCCGGTTTCAAACTTTGGAGAAATTTCCTGCATAATATATGAAAAACAGTGTGTACACTAGAA</canonical_amplicon>
		<polymorphic_amplicon>CAGACAGTCTCAAGGATCTATGTTTTGGAATTCTCATGACTGTCTTAGTCCTTTGAAACCCTTACTGTCCGTGRCGTTAAATGAACACATGAACACATGTGTCAGTTTAATATAACATTTTTTAGCGTTTTGAAACTGAAAAAAATGCATTCAATCATTTTCAGTCATAAAAAACTACTATGAATAAACCCGGTTTCAAACTTTGGAGAAATTTCCTGCATAATATATGAAAAACAGTGTGTACACTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9472</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>575798</contig_pos>
        <strand>+</strand>
        <context>TGGAGTCGTC[A/G]AAAAGAAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTTCAACGCATTTAATGCATTCTCATTTCTGAAGCTAGATGGAGTCGTC</left_flank>
        <right_flank>AAAAGAAGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGTTCC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGATACATATCTCTTACAAGAATTGAGAAACCGTAAATGCTGTAATAGAAAGTCAGCCTGTATTTGAATTTTGAGCGCAATTATTTTATTTTCTACTAGAGATATCGAAATTTGGTCAACTGAGATGAATGTTGGTGATATTATGATAAAAACCTTACCAGTTGAAAAATTTTTGATATCTCTGAGAGGAAACAAAGTATATCGACTCTAAGTTGAAAGATAGGGAGCCCTTCCATTTGAGGTTTTACGGTACTCGAGTTTAAAGTAACATATATGTAGAGTGGAATTCTAGAGCATTAACCATAATATTGAATTTTCAAAGCCAGCTTACCTCTACCGGAGAAGCCTGTGGACCGCAAACAGGTTGCTCCTGAATTCGATTTTCAGAAACGTTGACTCCTTCAGAAGAACAAGATGCGGTCATAGCTTTGACAAACTGCTCTACCACGTTCAACGCATTTAATGCATTCTCATTTCTGAAGCTAGATGGAGTCGTCAAAAAGAAGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGTTCCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTTGCATACCACATAAAGAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTATTTGTTTTC</canonical>
            <polymorphic>TTTGATACATATCTCTTACAAGAATTGAGAAACCGTAAATGCTGTAATAGAAAGTCAGCCTGTATTTGAATTTTGAGCGCAATTATTTTATTTTCTACTAGAGATATCGAAATTTGGTCAACTGAGATGAATGTTGGTGATATTATGATAAAAACCTTACCAGTTGAAAAATTTTTGATATCTCTGAGAGGAAACAAAGTATATCGACTCTAAGTTGAAAGATAGGGAGCCCTTCCATTTGAGGTTTTACGGTACTCGAGTTTAAAGTAACATATATGTAGAGTGGAATTCTAGAGCATTAACCATAATATTGAATTTTCAAAGCCAGCTTACCTCTACCGGAGAAGCCTGTGGACCGCAAACAGGTTGCTCCTGAATTCGATTTTCAGAAACGTTGACTCCTTCAGAAGAACAAGATGCGGTCATAGCTTTGACAAACTGCTCTACCACGTTCAACGCATTTAATGCATTCTCATTTCTGAAGCTAGATGGAGTCGTCRAAAAGAAGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGTTCCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTTGCATACCACATAAAGAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTATTTGTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCAGAAACGTTGACTCC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCATTATTTTTCAGCAATG</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCAGAAACGTTGACTCCTTCAGAAGAACAAGATGCGGTCATAGCTTTGACAAACTGCTCTACCACGTTCAACGCATTTAATGCATTCTCATTTCTGAAGCTAGATGGAGTCGTCAAAAAGAAGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGTTCCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCAGAAACGTTGACTCCTTCAGAAGAACAAGATGCGGTCATAGCTTTGACAAACTGCTCTACCACGTTCAACGCATTTAATGCATTCTCATTTCTGAAGCTAGATGGAGTCGTCRAAAAGAAGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGTTCCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9473</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>575846</contig_pos>
        <strand>+</strand>
        <context>TCTGTGATGT[A/T]YCCGTGGTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAAAAAGAAGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGT</left_flank>
        <right_flank>CCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAAGTCAGCCTGTATTTGAATTTTGAGCGCAATTATTTTATTTTCTACTAGAGATATCGAAATTTGGTCAACTGAGATGAATGTTGGTGATATTATGATAAAAACCTTACCAGTTGAAAAATTTTTGATATCTCTGAGAGGAAACAAAGTATATCGACTCTAAGTTGAAAGATAGGGAGCCCTTCCATTTGAGGTTTTACGGTACTCGAGTTTAAAGTAACATATATGTAGAGTGGAATTCTAGAGCATTAACCATAATATTGAATTTTCAAAGCCAGCTTACCTCTACCGGAGAAGCCTGTGGACCGCAAACAGGTTGCTCCTGAATTCGATTTTCAGAAACGTTGACTCCTTCAGAAGAACAAGATGCGGTCATAGCTTTGACAAACTGCTCTACCACGTTCAACGCATTTAATGCATTCTCATTTCTGAAGCTAGATGGAGTCGTCAAAAAGAAGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGTTCCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTTGCATACCACATAAAGAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTATTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATTTCCTGGTAACTT</canonical>
            <polymorphic>AGAAAGTCAGCCTGTATTTGAATTTTGAGCGCAATTATTTTATTTTCTACTAGAGATATCGAAATTTGGTCAACTGAGATGAATGTTGGTGATATTATGATAAAAACCTTACCAGTTGAAAAATTTTTGATATCTCTGAGAGGAAACAAAGTATATCGACTCTAAGTTGAAAGATAGGGAGCCCTTCCATTTGAGGTTTTACGGTACTCGAGTTTAAAGTAACATATATGTAGAGTGGAATTCTAGAGCATTAACCATAATATTGAATTTTCAAAGCCAGCTTACCTCTACCGGAGAAGCCTGTGGACCGCAAACAGGTTGCTCCTGAATTCGATTTTCAGAAACGTTGACTCCTTCAGAAGAACAAGATGCGGTCATAGCTTTGACAAACTGCTCTACCACGTTCAACGCATTTAATGCATTCTCATTTCTGAAGCTAGATGGAGTCGTCAAAAAGAAGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGTWCCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTTGCATACCACATAAAGAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTATTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATTTCCTGGTAACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCAGAAACGTTGACTCC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCATTATTTTTCAGCAATG</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCAGAAACGTTGACTCCTTCAGAAGAACAAGATGCGGTCATAGCTTTGACAAACTGCTCTACCACGTTCAACGCATTTAATGCATTCTCATTTCTGAAGCTAGATGGAGTCGTCAAAAAGAAGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGTTCCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCAGAAACGTTGACTCCTTCAGAAGAACAAGATGCGGTCATAGCTTTGACAAACTGCTCTACCACGTTCAACGCATTTAATGCATTCTCATTTCTGAAGCTAGATGGAGTCGTCAAAAAGAAGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGTWCCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9474</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>575847</contig_pos>
        <strand>+</strand>
        <context>CTGTGATGTW[C/T]CCGTGGTCGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAAAAGAAGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGTT</left_flank>
        <right_flank>CCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAGTCAGCCTGTATTTGAATTTTGAGCGCAATTATTTTATTTTCTACTAGAGATATCGAAATTTGGTCAACTGAGATGAATGTTGGTGATATTATGATAAAAACCTTACCAGTTGAAAAATTTTTGATATCTCTGAGAGGAAACAAAGTATATCGACTCTAAGTTGAAAGATAGGGAGCCCTTCCATTTGAGGTTTTACGGTACTCGAGTTTAAAGTAACATATATGTAGAGTGGAATTCTAGAGCATTAACCATAATATTGAATTTTCAAAGCCAGCTTACCTCTACCGGAGAAGCCTGTGGACCGCAAACAGGTTGCTCCTGAATTCGATTTTCAGAAACGTTGACTCCTTCAGAAGAACAAGATGCGGTCATAGCTTTGACAAACTGCTCTACCACGTTCAACGCATTTAATGCATTCTCATTTCTGAAGCTAGATGGAGTCGTCAAAAAGAAGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGTTCCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTTGCATACCACATAAAGAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTATTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATTTCCTGGTAACTTA</canonical>
            <polymorphic>GAAAGTCAGCCTGTATTTGAATTTTGAGCGCAATTATTTTATTTTCTACTAGAGATATCGAAATTTGGTCAACTGAGATGAATGTTGGTGATATTATGATAAAAACCTTACCAGTTGAAAAATTTTTGATATCTCTGAGAGGAAACAAAGTATATCGACTCTAAGTTGAAAGATAGGGAGCCCTTCCATTTGAGGTTTTACGGTACTCGAGTTTAAAGTAACATATATGTAGAGTGGAATTCTAGAGCATTAACCATAATATTGAATTTTCAAAGCCAGCTTACCTCTACCGGAGAAGCCTGTGGACCGCAAACAGGTTGCTCCTGAATTCGATTTTCAGAAACGTTGACTCCTTCAGAAGAACAAGATGCGGTCATAGCTTTGACAAACTGCTCTACCACGTTCAACGCATTTAATGCATTCTCATTTCTGAAGCTAGATGGAGTCGTCAAAAAGAAGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGTTYCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTTGCATACCACATAAAGAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTATTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATTTCCTGGTAACTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCAGAAACGTTGACTCC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCATTATTTTTCAGCAATG</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCAGAAACGTTGACTCCTTCAGAAGAACAAGATGCGGTCATAGCTTTGACAAACTGCTCTACCACGTTCAACGCATTTAATGCATTCTCATTTCTGAAGCTAGATGGAGTCGTCAAAAAGAAGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGTTCCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCAGAAACGTTGACTCCTTCAGAAGAACAAGATGCGGTCATAGCTTTGACAAACTGCTCTACCACGTTCAACGCATTTAATGCATTCTCATTTCTGAAGCTAGATGGAGTCGTCAAAAAGAAGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGTTYCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9475</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>575862</contig_pos>
        <strand>+</strand>
        <context>GGTCGTTTAA[C/T]TGGTGCTGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCTTGTGAGATTAGGCTATCGACTCTGTGATGTTCCCGTGGTCGTTTAA</left_flank>
        <right_flank>TGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAATTTTGAGCGCAATTATTTTATTTTCTACTAGAGATATCGAAATTTGGTCAACTGAGATGAATGTTGGTGATATTATGATAAAAACCTTACCAGTTGAAAAATTTTTGATATCTCTGAGAGGAAACAAAGTATATCGACTCTAAGTTGAAAGATAGGGAGCCCTTCCATTTGAGGTTTTACGGTACTCGAGTTTAAAGTAACATATATGTAGAGTGGAATTCTAGAGCATTAACCATAATATTGAATTTTCAAAGCCAGCTTACCTCTACCGGAGAAGCCTGTGGACCGCAAACAGGTTGCTCCTGAATTCGATTTTCAGAAACGTTGACTCCTTCAGAAGAACAAGATGCGGTCATAGCTTTGACAAACTGCTCTACCACGTTCAACGCATTTAATGCATTCTCATTTCTGAAGCTAGATGGAGTCGTCAAAAAGAAGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGTTCCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTTGCATACCACATAAAGAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTATTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATTTCCTGGTAACTTAATTCAAATGGCTAAG</canonical>
            <polymorphic>TTTGAATTTTGAGCGCAATTATTTTATTTTCTACTAGAGATATCGAAATTTGGTCAACTGAGATGAATGTTGGTGATATTATGATAAAAACCTTACCAGTTGAAAAATTTTTGATATCTCTGAGAGGAAACAAAGTATATCGACTCTAAGTTGAAAGATAGGGAGCCCTTCCATTTGAGGTTTTACGGTACTCGAGTTTAAAGTAACATATATGTAGAGTGGAATTCTAGAGCATTAACCATAATATTGAATTTTCAAAGCCAGCTTACCTCTACCGGAGAAGCCTGTGGACCGCAAACAGGTTGCTCCTGAATTCGATTTTCAGAAACGTTGACTCCTTCAGAAGAACAAGATGCGGTCATAGCTTTGACAAACTGCTCTACCACGTTCAACGCATTTAATGCATTCTCATTTCTGAAGCTAGATGGAGTCGTCAAAAAGAAGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGTTCCCGTGGTCGTTTAAYTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTTGCATACCACATAAAGAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTATTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATTTCCTGGTAACTTAATTCAAATGGCTAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>237 186 117 83 67 62 59 46 30 27 22 21 16 12 11 4</canonical_bands>
                <polymorphic_bands>237 232 117 83 67 62 59 30 27 22 21 16 12 11 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTTGGCTCTTGTGAGATTAG</pcr_primer_p1>
		<pcr_primer_p2>AGAATAGAACAAGAGTAAGGAACC</pcr_primer_p2>
		<pcr_amplicon_size>302</pcr_amplicon_size>
		<canonical_amplicon>AGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGTTCCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGTTCTATTCT</canonical_amplicon>
		<polymorphic_amplicon>AGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGTTCCCGTGGTCGTTTAAYTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGTTCTATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9476</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>576345</contig_pos>
        <strand>+</strand>
        <context>TCCTGGTAAC[A/T]TAATTCAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATTTCCTGGTAAC</left_flank>
        <right_flank>TAATTCAAATGGCTAAGAATCTTTATTGGGAACTTTTTTGTCAGGTTTTC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTTGCATACCACATAAAGAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTATTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATTTCCTGGTAACTTAATTCAAATGGCTAAGAATCTTTATTGGGAACTTTTTTGTCAGGTTTTCTCAAGAATAGATTTACCTTTCACTTTTTTTCCAACTTTCCCATAAGATAAGTTATTTGTTTTTTGAAAGTAGGCCAGAAAAGGTATTGATTATCCGAATGAAGGGATTTCAAACGTTTTAGCAAAATCCAGACATCCTACGAAACTCATAGAAAGCAGAACATTTATCTTTTTCTCTTACATTCGTGTTTACCTAAATCTTTCCTTAATTGAGCCGAAAAACTAAAGAGAAAACACAAAAATTAGGTTGAAGACGTCAAAAATTGAGAAGACCTTTCTCTGCGTCTCTTCGCTCTAGTGTGCTAGTCAATGGGGCGCGTTTGTATCATTGTGCGGGAACGAATTCTAGCGAGTGCCATTCCGAAGGGGGGGGGGGTGCGATAGGTCGAAGGCATTTGAGAACTCTCAAAACAGCGTTGTTCCAATTGGAGTTCGTTCAACACAAGTTATG</canonical>
            <polymorphic>TCCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTTGCATACCACATAAAGAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTATTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATTTCCTGGTAACWTAATTCAAATGGCTAAGAATCTTTATTGGGAACTTTTTTGTCAGGTTTTCTCAAGAATAGATTTACCTTTCACTTTTTTTCCAACTTTCCCATAAGATAAGTTATTTGTTTTTTGAAAGTAGGCCAGAAAAGGTATTGATTATCCGAATGAAGGGATTTCAAACGTTTTAGCAAAATCCAGACATCCTACGAAACTCATAGAAAGCAGAACATTTATCTTTTTCTCTTACATTCGTGTTTACCTAAATCTTTCCTTAATTGAGCCGAAAAACTAAAGAGAAAACACAAAAATTAGGTTGAAGACGTCAAAAATTGAGAAGACCTTTCTCTGCGTCTCTTCGCTCTAGTGTGCTAGTCAATGGGGCGCGTTTGTATCATTGTGCGGGAACGAATTCTAGCGAGTGCCATTCCGAAGGGGGGGGGGGTGCGATAGGTCGAAGGCATTTGAGAACTCTCAAAACAGCGTTGTTCCAATTGGAGTTCGTTCAACACAAGTTATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>311 255 245 99 50 27 13</canonical_bands>
                <polymorphic_bands>311 282 245 99 50 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGCTTGTAAATTCGATGAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATACCTTTTCTGGCCTACTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTATTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATTTCCTGGTAACTTAATTCAAATGGCTAAGAATCTTTATTGGGAACTTTTTTGTCAGGTTTTCTCAAGAATAGATTTACCTTTCACTTTTTTTCCAACTTTCCCATAAGATAAGTTATTTGTTTTTTGAAAGTAGGCCAGAAAAGGTAT</canonical_amplicon>
		<polymorphic_amplicon>TATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTATTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATTTCCTGGTAACWTAATTCAAATGGCTAAGAATCTTTATTGGGAACTTTTTTGTCAGGTTTTCTCAAGAATAGATTTACCTTTCACTTTTTTTCCAACTTTCCCATAAGATAAGTTATTTGTTTTTTGAAAGTAGGCCAGAAAAGGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9477</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>576324</contig_pos>
        <strand>+</strand>
        <context>TAGTTTAAAA[A/C]AATTTGGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAAAAGGAAAATCTATTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAA</left_flank>
        <right_flank>AATTTGGATTTCCTGGTAACTTAATTCAAATGGCTAAGAATCTTTATTGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGCTATCGACTCTGTGATGTTCCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTTGCATACCACATAAAGAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTATTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATTTCCTGGTAACTTAATTCAAATGGCTAAGAATCTTTATTGGGAACTTTTTTGTCAGGTTTTCTCAAGAATAGATTTACCTTTCACTTTTTTTCCAACTTTCCCATAAGATAAGTTATTTGTTTTTTGAAAGTAGGCCAGAAAAGGTATTGATTATCCGAATGAAGGGATTTCAAACGTTTTAGCAAAATCCAGACATCCTACGAAACTCATAGAAAGCAGAACATTTATCTTTTTCTCTTACATTCGTGTTTACCTAAATCTTTCCTTAATTGAGCCGAAAAACTAAAGAGAAAACACAAAAATTAGGTTGAAGACGTCAAAAATTGAGAAGACCTTTCTCTGCGTCTCTTCGCTCTAGTGTGCTAGTCAATGGGGCGCGTTTGTATCATTGTGCGGGAACGAATTCTAGCGAGTGCCATTCCGAAGGGGGGGGGGGTGCGATAGGTCGAAGGCATTTGAGAACTCTCAAAACAGCGTTGTTCCAATTGGA</canonical>
            <polymorphic>AGGCTATCGACTCTGTGATGTTCCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTTGCATACCACATAAAGAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTATTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAMAATTTGGATTTCCTGGTAACTTAATTCAAATGGCTAAGAATCTTTATTGGGAACTTTTTTGTCAGGTTTTCTCAAGAATAGATTTACCTTTCACTTTTTTTCCAACTTTCCCATAAGATAAGTTATTTGTTTTTTGAAAGTAGGCCAGAAAAGGTATTGATTATCCGAATGAAGGGATTTCAAACGTTTTAGCAAAATCCAGACATCCTACGAAACTCATAGAAAGCAGAACATTTATCTTTTTCTCTTACATTCGTGTTTACCTAAATCTTTCCTTAATTGAGCCGAAAAACTAAAGAGAAAACACAAAAATTAGGTTGAAGACGTCAAAAATTGAGAAGACCTTTCTCTGCGTCTCTTCGCTCTAGTGTGCTAGTCAATGGGGCGCGTTTGTATCATTGTGCGGGAACGAATTCTAGCGAGTGCCATTCCGAAGGGGGGGGGGGTGCGATAGGTCGAAGGCATTTGAGAACTCTCAAAACAGCGTTGTTCCAATTGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>411 315 102 89 83</canonical_bands>
                <polymorphic_bands>494 315 102 89</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTATTTTGCATACCACATAAA</pcr_primer_p1>
		<pcr_primer_p2>AGTTCCCAATAAAGATTCTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTATTTTGCATACCACATAAAGAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTATTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATTTCCTGGTAACTTAATTCAAATGGCTAAGAATCTTTATTGGGAACT</canonical_amplicon>
		<polymorphic_amplicon>GGTATTTTGCATACCACATAAAGAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTATTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAMAATTTGGATTTCCTGGTAACTTAATTCAAATGGCTAAGAATCTTTATTGGGAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9478</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>576290</contig_pos>
        <strand>+</strand>
        <context>GGAAMATCTA[A/T]TTGTTTTCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTA</left_flank>
        <right_flank>TTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATTTCCTGG</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCGTCAAAAAGAAGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGTTCCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTTGCATACCACATAAAGAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTATTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATTTCCTGGTAACTTAATTCAAATGGCTAAGAATCTTTATTGGGAACTTTTTTGTCAGGTTTTCTCAAGAATAGATTTACCTTTCACTTTTTTTCCAACTTTCCCATAAGATAAGTTATTTGTTTTTTGAAAGTAGGCCAGAAAAGGTATTGATTATCCGAATGAAGGGATTTCAAACGTTTTAGCAAAATCCAGACATCCTACGAAACTCATAGAAAGCAGAACATTTATCTTTTTCTCTTACATTCGTGTTTACCTAAATCTTTCCTTAATTGAGCCGAAAAACTAAAGAGAAAACACAAAAATTAGGTTGAAGACGTCAAAAATTGAGAAGACCTTTCTCTGCGTCTCTTCGCTCTAGTGTGCTAGTCAATGGGGCGCGTTTGTATCATTGTGCGGGAACGAATTCTAGCGAGTGCCATTCCGAAGGGGGGGGGGGTGCGATAGGTCGAAGGCATT</canonical>
            <polymorphic>AGTCGTCAAAAAGAAGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGTTCCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTTGCATACCACATAAAGAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTAWTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATTTCCTGGTAACTTAATTCAAATGGCTAAGAATCTTTATTGGGAACTTTTTTGTCAGGTTTTCTCAAGAATAGATTTACCTTTCACTTTTTTTCCAACTTTCCCATAAGATAAGTTATTTGTTTTTTGAAAGTAGGCCAGAAAAGGTATTGATTATCCGAATGAAGGGATTTCAAACGTTTTAGCAAAATCCAGACATCCTACGAAACTCATAGAAAGCAGAACATTTATCTTTTTCTCTTACATTCGTGTTTACCTAAATCTTTCCTTAATTGAGCCGAAAAACTAAAGAGAAAACACAAAAATTAGGTTGAAGACGTCAAAAATTGAGAAGACCTTTCTCTGCGTCTCTTCGCTCTAGTGTGCTAGTCAATGGGGCGCGTTTGTATCATTGTGCGGGAACGAATTCTAGCGAGTGCCATTCCGAAGGGGGGGGGGGTGCGATAGGTCGAAGGCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTATTTTGCATACCACATAAA</pcr_primer_p1>
		<pcr_primer_p2>AGTTCCCAATAAAGATTCTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTATTTTGCATACCACATAAAGAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTATTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATTTCCTGGTAACTTAATTCAAATGGCTAAGAATCTTTATTGGGAACT</canonical_amplicon>
		<polymorphic_amplicon>GGTATTTTGCATACCACATAAAGAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTAWTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATTTCCTGGTAACTTAATTCAAATGGCTAAGAATCTTTATTGGGAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9479</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>576284</contig_pos>
        <strand>+</strand>
        <context>AGAAAAGGAA[A/C]ATCTAWTTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAA</left_flank>
        <right_flank>ATCTATTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATGGAGTCGTCAAAAAGAAGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGTTCCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTTGCATACCACATAAAGAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTATTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATTTCCTGGTAACTTAATTCAAATGGCTAAGAATCTTTATTGGGAACTTTTTTGTCAGGTTTTCTCAAGAATAGATTTACCTTTCACTTTTTTTCCAACTTTCCCATAAGATAAGTTATTTGTTTTTTGAAAGTAGGCCAGAAAAGGTATTGATTATCCGAATGAAGGGATTTCAAACGTTTTAGCAAAATCCAGACATCCTACGAAACTCATAGAAAGCAGAACATTTATCTTTTTCTCTTACATTCGTGTTTACCTAAATCTTTCCTTAATTGAGCCGAAAAACTAAAGAGAAAACACAAAAATTAGGTTGAAGACGTCAAAAATTGAGAAGACCTTTCTCTGCGTCTCTTCGCTCTAGTGTGCTAGTCAATGGGGCGCGTTTGTATCATTGTGCGGGAACGAATTCTAGCGAGTGCCATTCCGAAGGGGGGGGGGGTGCGATAGGTCGAA</canonical>
            <polymorphic>AGATGGAGTCGTCAAAAAGAAGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGTTCCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTTGCATACCACATAAAGAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAMATCTATTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATTTCCTGGTAACTTAATTCAAATGGCTAAGAATCTTTATTGGGAACTTTTTTGTCAGGTTTTCTCAAGAATAGATTTACCTTTCACTTTTTTTCCAACTTTCCCATAAGATAAGTTATTTGTTTTTTGAAAGTAGGCCAGAAAAGGTATTGATTATCCGAATGAAGGGATTTCAAACGTTTTAGCAAAATCCAGACATCCTACGAAACTCATAGAAAGCAGAACATTTATCTTTTTCTCTTACATTCGTGTTTACCTAAATCTTTCCTTAATTGAGCCGAAAAACTAAAGAGAAAACACAAAAATTAGGTTGAAGACGTCAAAAATTGAGAAGACCTTTCTCTGCGTCTCTTCGCTCTAGTGTGCTAGTCAATGGGGCGCGTTTGTATCATTGTGCGGGAACGAATTCTAGCGAGTGCCATTCCGAAGGGGGGGGGGGTGCGATAGGTCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTATTTTGCATACCACATAAA</pcr_primer_p1>
		<pcr_primer_p2>AGTTCCCAATAAAGATTCTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTATTTTGCATACCACATAAAGAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTATTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATTTCCTGGTAACTTAATTCAAATGGCTAAGAATCTTTATTGGGAACT</canonical_amplicon>
		<polymorphic_amplicon>GGTATTTTGCATACCACATAAAGAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAMATCTATTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATTTCCTGGTAACTTAATTCAAATGGCTAAGAATCTTTATTGGGAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9480</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>576152</contig_pos>
        <strand>+</strand>
        <context>ACCACATAAA[G/T]AGAGATTTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTTGCATACCACATAAA</left_flank>
        <right_flank>AGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCGCAAACAGGTTGCTCCTGAATTCGATTTTCAGAAACGTTGACTCCTTCAGAAGAACAAGATGCGGTCATAGCTTTGACAAACTGCTCTACCACGTTCAACGCATTTAATGCATTCTCATTTCTGAAGCTAGATGGAGTCGTCAAAAAGAAGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGTTCCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTTGCATACCACATAAAGAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTATTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATTTCCTGGTAACTTAATTCAAATGGCTAAGAATCTTTATTGGGAACTTTTTTGTCAGGTTTTCTCAAGAATAGATTTACCTTTCACTTTTTTTCCAACTTTCCCATAAGATAAGTTATTTGTTTTTTGAAAGTAGGCCAGAAAAGGTATTGATTATCCGAATGAAGGGATTTCAAACGTTTTAGCAAAATCCAGACATCCTACGAAACTCATAGAAAGCAGAACATTTATCTTTTTCTCTTACATTCGTGTTTACCTAAATCTTTCCTTAATTGAGCCGAAAAACTAAAGAGAAAACACAAAAATTAGGTTGAAGACGTC</canonical>
            <polymorphic>ACCGCAAACAGGTTGCTCCTGAATTCGATTTTCAGAAACGTTGACTCCTTCAGAAGAACAAGATGCGGTCATAGCTTTGACAAACTGCTCTACCACGTTCAACGCATTTAATGCATTCTCATTTCTGAAGCTAGATGGAGTCGTCAAAAAGAAGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGTTCCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTTGCATACCACATAAAKAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTATTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATTTCCTGGTAACTTAATTCAAATGGCTAAGAATCTTTATTGGGAACTTTTTTGTCAGGTTTTCTCAAGAATAGATTTACCTTTCACTTTTTTTCCAACTTTCCCATAAGATAAGTTATTTGTTTTTTGAAAGTAGGCCAGAAAAGGTATTGATTATCCGAATGAAGGGATTTCAAACGTTTTAGCAAAATCCAGACATCCTACGAAACTCATAGAAAGCAGAACATTTATCTTTTTCTCTTACATTCGTGTTTACCTAAATCTTTCCTTAATTGAGCCGAAAAACTAAAGAGAAAACACAAAAATTAGGTTGAAGACGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTTCCTTACTCTTGTTCTATT</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTCTTCTCTTAGCAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>201</pcr_amplicon_size>
		<canonical_amplicon>TTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTTGCATACCACATAAAGAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>TTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTTGCATACCACATAAAKAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9481</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>632641</contig_pos>
        <strand>+</strand>
        <context>TGAAACATAC[A/G]TTTCGGAGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAAATTCAAAACTTGCCTTATGGTCTTCTAGTAACGATTTGAAACATAC</left_flank>
        <right_flank>TTTCGGAGAGTGTAGACTTCCTGGAAATTAACTAATTTATTAGAGTCTCA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATACGTCGTAATCGTTCCTGCCTCACTTTCTTCAGATTTTCGATCTATCGAACTTCGTTCAGATTCCGATACTTTCACTGGTTTCTTTTGCTGCAATTTTTAATATTTTTTCGAAAAAAAAATTTAAAAAAAAAACAAACCAGCAACAATTCCAGCGATTTCTCATCAAACAAATTCGTCTGTTTGAATCCATTAATCCATCGTTTCTCCACAAAAAATATACAATTGCAGACGAGTCGGAAGAAATTCGAAGAATCCGTATTTTTGAAAATCGGCAGTTTTTTCTAAAAAATTCAACTTTTTGGACTAAAAATTTTTCCTATTAACTTACAAAATATGCGACAAAACGGAGATTTTCGCATAGCTGCTTGTAGGTGGTGCTGGAGATTTTGGCGAATTTTTCTAGGATTTCCTGAAAAAAATAAAATTTTCAAAAATTGATTTTTTTTTAAAATTCAAAACTTGCCTTATGGTCTTCTAGTAACGATTTGAAACATACGTTTCGGAGAGTGTAGACTTCCTGGAAATTAACTAATTTATTAGAGTCTCAAAGACAAAAAATTACATGACGAAAGCGAATTTTCGCGGATTGACCGCATTGCAGGGCATTTACGACTTCCCAGAGGCAAGTTTGTGGATTTGCCGGAAAAGATTGCTGGAATCTCGACAGATTTTCGTCTCTACGACGTTGAACGGCCGCCGACGTTGACGGCTGCGACGGATCGTGGCGCGGCGCACCGCGAAACGACATTATCTTGCTGGAAATTCGAATTTCAGTTAGTTTTTGAGTCAAAGAAGATAAATTTGAAGAGAAAAAGTTGAAAAACGGCAATTTTCTGCTAAATTCTGGGCCTAAAATTTGAGAAAATTCGAAAAAATCGGCGCATCTTTTTGAATTTGATGCAAACGCGCTCTATCGCACCAAGGCGAGAAAATCGATTTTTTCGAATAAAACCGAGGGAATTCGGTTGTTTCAGGTCAAAATCTTGTTTCACATAAT</canonical>
            <polymorphic>ATACGTCGTAATCGTTCCTGCCTCACTTTCTTCAGATTTTCGATCTATCGAACTTCGTTCAGATTCCGATACTTTCACTGGTTTCTTTTGCTGCAATTTTTAATATTTTTTCGAAAAAAAAATTTAAAAAAAAAACAAACCAGCAACAATTCCAGCGATTTCTCATCAAACAAATTCGTCTGTTTGAATCCATTAATCCATCGTTTCTCCACAAAAAATATACAATTGCAGACGAGTCGGAAGAAATTCGAAGAATCCGTATTTTTGAAAATCGGCAGTTTTTTCTAAAAAATTCAACTTTTTGGACTAAAAATTTTTCCTATTAACTTACAAAATATGCGACAAAACGGAGATTTTCGCATAGCTGCTTGTAGGTGGTGCTGGAGATTTTGGCGAATTTTTCTAGGATTTCCTGAAAAAAATAAAATTTTCAAAAATTGATTTTTTTTTAAAATTCAAAACTTGCCTTATGGTCTTCTAGTAACGATTTGAAACATACRTTTCGGAGAGTGTAGACTTCCTGGAAATTAACTAATTTATTAGAGTCTCAAAGACAAAAAATTACATGACGAAAGCGAATTTTCGCGGATTGACCGCATTGCAGGGCATTTACGACTTCCCAGAGGCAAGTTTGTGGATTTGCCGGAAAAGATTGCTGGAATCTCGACAGATTTTCGTCTCTACGACGTTGAACGGCCGCCGACGTTGACGGCTGCGACGGATCGTGGCGCGGCGCACCGCGAAACGACATTATCTTGCTGGAAATTCGAATTTCAGTTAGTTTTTGAGTCAAAGAAGATAAATTTGAAGAGAAAAAGTTGAAAAACGGCAATTTTCTGCTAAATTCTGGGCCTAAAATTTGAGAAAATTCGAAAAAATCGGCGCATCTTTTTGAATTTGATGCAAACGCGCTCTATCGCACCAAGGCGAGAAAATCGATTTTTTCGAATAAAACCGAGGGAATTCGGTTGTTTCAGGTCAAAATCTTGTTTCACATAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>495 297 188 17 3</canonical_bands>
                <polymorphic_bands>683 297 17 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTACAAAATATGCGACAAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTCGCTTTCGTCATGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>ACTTACAAAATATGCGACAAAACGGAGATTTTCGCATAGCTGCTTGTAGGTGGTGCTGGAGATTTTGGCGAATTTTTCTAGGATTTCCTGAAAAAAATAAAATTTTCAAAAATTGATTTTTTTTTAAAATTCAAAACTTGCCTTATGGTCTTCTAGTAACGATTTGAAACATACGTTTCGGAGAGTGTAGACTTCCTGGAAATTAACTAATTTATTAGAGTCTCAAAGACAAAAAATTACATGACGAAAGCGAAT</canonical_amplicon>
		<polymorphic_amplicon>ACTTACAAAATATGCGACAAAACGGAGATTTTCGCATAGCTGCTTGTAGGTGGTGCTGGAGATTTTGGCGAATTTTTCTAGGATTTCCTGAAAAAAATAAAATTTTCAAAAATTGATTTTTTTTTAAAATTCAAAACTTGCCTTATGGTCTTCTAGTAACGATTTGAAACATACRTTTCGGAGAGTGTAGACTTCCTGGAAATTAACTAATTTATTAGAGTCTCAAAGACAAAAAATTACATGACGAAAGCGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9522</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>633258</contig_pos>
        <strand>+</strand>
        <context>ACGGCGGATT[G/T]AAATTTTTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGCAGTTTCAAAAGTGAAAGGTGACGAAAAATCGCTGAAAACGGCGGATT</left_flank>
        <right_flank>AAATTTTTGCCAAAAAAATCAGGAAAGTCTGTATTTTTGTAAATTTTAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCCAGAGGCAAGTTTGTGGATTTGCCGGAAAAGATTGCTGGAATCTCGACAGATTTTCGTCTCTACGACGTTGAACGGCCGCCGACGTTGACGGCTGCGACGGATCGTGGCGCGGCGCACCGCGAAACGACATTATCTTGCTGGAAATTCGAATTTCAGTTAGTTTTTGAGTCAAAGAAGATAAATTTGAAGAGAAAAAGTTGAAAAACGGCAATTTTCTGCTAAATTCTGGGCCTAAAATTTGAGAAAATTCGAAAAAATCGGCGCATCTTTTTGAATTTGATGCAAACGCGCTCTATCGCACCAAGGCGAGAAAATCGATTTTTTCGAATAAAACCGAGGGAATTCGGTTGTTTCAGGTCAAAATCTTGTTTCACATAATTTCCGGTCTAATTTTTGTAAAAACTTTGATTTATGAGGTTAAAAAGAAGCTTTTAAAAGTATAAAAAGCAGTTTCAAAAGTGAAAGGTGACGAAAAATCGCTGAAAACGGCGGATTTAAATTTTTGCCAAAAAAATCAGGAAAGTCTGTATTTTTGTAAATTTTAAAGGTTAAATCGGTTTTTAAGCTCGTTTCAGTGTAATTAAATGTTATTTGCTCATAAAAATAGGCTAAAGAATAGCCAAAAACGACTCAATCTCTCAAAAAAATCAAATCACAAATCAAGCCGCAAAAGATTAAAAATTAAGGAAAAAAGTAGGTCACAAGGCAACAGATTTTCCTCTGGTGTTGCCTGGGGTGAAGAACGTGGGTATATGCGGTGTGGTGGGTGAGAAAAACGAAGGCTGAAGAAAAGCAGGGGGGATTGTTCGAAACGAAGAAAGGGGGGCGTAAATAGTGTATGAAAAAGAGAAGCTACAAAGAAAACGAAGGAGGTTTCTTTCTTTCAAACACACTCCGGTTGCCTTACATCAAATGTTTGAATCGATACACTTCTTTTTTATTCTTCTTCCCAAAAGATCTGATTGATAATACGTACTTTACACCTTCCACTTATCA</canonical>
            <polymorphic>TCCCAGAGGCAAGTTTGTGGATTTGCCGGAAAAGATTGCTGGAATCTCGACAGATTTTCGTCTCTACGACGTTGAACGGCCGCCGACGTTGACGGCTGCGACGGATCGTGGCGCGGCGCACCGCGAAACGACATTATCTTGCTGGAAATTCGAATTTCAGTTAGTTTTTGAGTCAAAGAAGATAAATTTGAAGAGAAAAAGTTGAAAAACGGCAATTTTCTGCTAAATTCTGGGCCTAAAATTTGAGAAAATTCGAAAAAATCGGCGCATCTTTTTGAATTTGATGCAAACGCGCTCTATCGCACCAAGGCGAGAAAATCGATTTTTTCGAATAAAACCGAGGGAATTCGGTTGTTTCAGGTCAAAATCTTGTTTCACATAATTTCCGGTCTAATTTTTGTAAAAACTTTGATTTATGAGGTTAAAAAGAAGCTTTTAAAAGTATAAAAAGCAGTTTCAAAAGTGAAAGGTGACGAAAAATCGCTGAAAACGGCGGATTKAAATTTTTGCCAAAAAAATCAGGAAAGTCTGTATTTTTGTAAATTTTAAAGGTTAAATCGGTTTTTAAGCTCGTTTCAGTGTAATTAAATGTTATTTGCTCATAAAAATAGGCTAAAGAATAGCCAAAAACGACTCAATCTCTCAAAAAAATCAAATCACAAATCAAGCCGCAAAAGATTAAAAATTAAGGAAAAAAGTAGGTCACAAGGCAACAGATTTTCCTCTGGTGTTGCCTGGGGTGAAGAACGTGGGTATATGCGGTGTGGTGGGTGAGAAAAACGAAGGCTGAAGAAAAGCAGGGGGGATTGTTCGAAACGAAGAAAGGGGGGCGTAAATAGTGTATGAAAAAGAGAAGCTACAAAGAAAACGAAGGAGGTTTCTTTCTTTCAAACACACTCCGGTTGCCTTACATCAAATGTTTGAATCGATACACTTCTTTTTTATTCTTCTTCCCAAAAGATCTGATTGATAATACGTACTTTACACCTTCCACTTATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>453 437 63 47</canonical_bands>
                <polymorphic_bands>453 437 110</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>422 314 94 63 47 20 14 12 7 7</canonical_bands>
                <polymorphic_bands>422 314 110 94 20 14 12 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>ATTTAAAT</site>
                <isoschizomers>
                    <enzyme>SmiI</enzyme>
                    <enzyme>SwaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAATTTCCGGTCTAATTTTTGT</pcr_primer_p1>
		<pcr_primer_p2>TTTGGCTATTCTTTAGCCTATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAATTTCCGGTCTAATTTTTGTAAAAACTTTGATTTATGAGGTTAAAAAGAAGCTTTTAAAAGTATAAAAAGCAGTTTCAAAAGTGAAAGGTGACGAAAAATCGCTGAAAACGGCGGATTTAAATTTTTGCCAAAAAAATCAGGAAAGTCTGTATTTTTGTAAATTTTAAAGGTTAAATCGGTTTTTAAGCTCGTTTCAGTGTAATTAAATGTTATTTGCTCATAAAAATAGGCTAAAGAATAGCCAAA</canonical_amplicon>
		<polymorphic_amplicon>ATAATTTCCGGTCTAATTTTTGTAAAAACTTTGATTTATGAGGTTAAAAAGAAGCTTTTAAAAGTATAAAAAGCAGTTTCAAAAGTGAAAGGTGACGAAAAATCGCTGAAAACGGCGGATTKAAATTTTTGCCAAAAAAATCAGGAAAGTCTGTATTTTTGTAAATTTTAAAGGTTAAATCGGTTTTTAAGCTCGTTTCAGTGTAATTAAATGTTATTTGCTCATAAAAATAGGCTAAAGAATAGCCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9523</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>671726</contig_pos>
        <strand>+</strand>
        <context>GTTGATCCGT[A/G]AAGAAAATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATACTTCACAACGCCTCCGTCTTCCGTCCATTTTGCTGGTTGATCCGT</left_flank>
        <right_flank>AAGAAAATGAAGGAGAGAATATTCGCCTGAAAAGGGGTACATTTTAAGGT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAGTCCTTTTTTGTTGATTTTTTGAGAAGAGGGGGCGGTTTTTTGTGTCTCATCAACGTATTCTTCTACACTCATCAACTATGATAATCACGTGAAGAAAGAGAAGACGATCTAGTGAGAGTTTGTTTCTCACGGGGGCAAAAAATAATAAAGGAGAATCTAGAAAAAGGAAAAAGAAGAAAAAGAAGGAGCGTAAGAAAAGAAGAATATGCTAGTGTTTGAAAAAAATGATAAATGCATAAGAGAGAAAAAGAAGAGGGAATTGACTCATTTTGCTCGGTTACTCTTCTATCTATTCGTAGAAAAACATTGGGATTCTTATAGCAAAGAAGAAGAAGATTCTTTCTTCTCATTAGTTGAATTGGATGGGATGAAGAAGAAGAAGGAGATGGAAAACGAGAAAGAGCAAAAGAGGGATTCTAGATTTTCACGATTTCCTTCTCCTTTGAATACTTCACAACGCCTCCGTCTTCCGTCCATTTTGCTGGTTGATCCGTAAAGAAAATGAAGGAGAGAATATTCGCCTGAAAAGGGGTACATTTTAAGGTTACAAATAAAAATTAATGACTATCCAGTAGAAATTTTCAAAATTATTGAAATTCAAATAAAGATAGCTTCTCATGTTTTCGAAATTCGGACTCCAACACAGTGAATACTGCTGGAATTTCCAATTTTTTCAATTTTTTTAACTTTAGAAAACAGGAAAAATGTAGTGCTAACACTGAATTGGTGGAATGAATGAACCTAACTATTATAGTTTTGTGAAACATTTTTTTTGAATCACCCGAAATTTATCAAGAAACAACAACATTTCTCTCTGATTTTTTAAAAATCCACAGAATATTTTATTGCAAAAAGTTCATAATACTGTTCGTAGACTTTGATCCATTCTCCGCTTTTTTGTTTCGATTTTTAAAATTTATTTATAGTGCAGTTACAAAACTCACATTGTCAATAGTTAGAAAAAAATGAGTTGCACAAAATGTCGAGACAGATTT</canonical>
            <polymorphic>CAAAGTCCTTTTTTGTTGATTTTTTGAGAAGAGGGGGCGGTTTTTTGTGTCTCATCAACGTATTCTTCTACACTCATCAACTATGATAATCACGTGAAGAAAGAGAAGACGATCTAGTGAGAGTTTGTTTCTCACGGGGGCAAAAAATAATAAAGGAGAATCTAGAAAAAGGAAAAAGAAGAAAAAGAAGGAGCGTAAGAAAAGAAGAATATGCTAGTGTTTGAAAAAAATGATAAATGCATAAGAGAGAAAAAGAAGAGGGAATTGACTCATTTTGCTCGGTTACTCTTCTATCTATTCGTAGAAAAACATTGGGATTCTTATAGCAAAGAAGAAGAAGATTCTTTCTTCTCATTAGTTGAATTGGATGGGATGAAGAAGAAGAAGGAGATGGAAAACGAGAAAGAGCAAAAGAGGGATTCTAGATTTTCACGATTTCCTTCTCCTTTGAATACTTCACAACGCCTCCGTCTTCCGTCCATTTTGCTGGTTGATCCGTRAAGAAAATGAAGGAGAGAATATTCGCCTGAAAAGGGGTACATTTTAAGGTTACAAATAAAAATTAATGACTATCCAGTAGAAATTTTCAAAATTATTGAAATTCAAATAAAGATAGCTTCTCATGTTTTCGAAATTCGGACTCCAACACAGTGAATACTGCTGGAATTTCCAATTTTTTCAATTTTTTTAACTTTAGAAAACAGGAAAAATGTAGTGCTAACACTGAATTGGTGGAATGAATGAACCTAACTATTATAGTTTTGTGAAACATTTTTTTTGAATCACCCGAAATTTATCAAGAAACAACAACATTTCTCTCTGATTTTTTAAAAATCCACAGAATATTTTATTGCAAAAAGTTCATAATACTGTTCGTAGACTTTGATCCATTCTCCGCTTTTTTGTTTCGATTTTTAAAATTTATTTATAGTGCAGTTACAAAACTCACATTGTCAATAGTTAGAAAAAAATGAGTTGCACAAAATGTCGAGACAGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGATTTTCACGATTTCCTTCT</pcr_primer_p1>
		<pcr_primer_p2>AAATTCCAGCAGTATTCACTGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTAGATTTTCACGATTTCCTTCTCCTTTGAATACTTCACAACGCCTCCGTCTTCCGTCCATTTTGCTGGTTGATCCGTAAAGAAAATGAAGGAGAGAATATTCGCCTGAAAAGGGGTACATTTTAAGGTTACAAATAAAAATTAATGACTATCCAGTAGAAATTTTCAAAATTATTGAAATTCAAATAAAGATAGCTTCTCATGTTTTCGAAATTCGGACTCCAACACAGTGAATACTGCTGGAATTT</canonical_amplicon>
		<polymorphic_amplicon>CTAGATTTTCACGATTTCCTTCTCCTTTGAATACTTCACAACGCCTCCGTCTTCCGTCCATTTTGCTGGTTGATCCGTRAAGAAAATGAAGGAGAGAATATTCGCCTGAAAAGGGGTACATTTTAAGGTTACAAATAAAAATTAATGACTATCCAGTAGAAATTTTCAAAATTATTGAAATTCAAATAAAGATAGCTTCTCATGTTTTCGAAATTCGGACTCCAACACAGTGAATACTGCTGGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9562</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>671602</contig_pos>
        <strand>+</strand>
        <context>GGATgggatg[C/T]agaagaagaa</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCAAAGAAGAAGAAGATTCTTTCTTCTCATTAGTTGAATTGGATGGGATG</left_flank>
        <right_flank>AGAAGAAGAAGGAGATGGAAAACGAGAAAGAGCAAAAGAGGGATTCTAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGCAACAGTGAAAAATGTAAAACATGGAAAATGAACACTTTAGAACCCGTAGTTTCAACATTTAAAAAGAGAGAAAAAGTACTCAGATGGACTTTAGACAATCTACATGACGTACAAAAAAGCAAAGTCCTTTTTTGTTGATTTTTTGAGAAGAGGGGGCGGTTTTTTGTGTCTCATCAACGTATTCTTCTACACTCATCAACTATGATAATCACGTGAAGAAAGAGAAGACGATCTAGTGAGAGTTTGTTTCTCACGGGGGCAAAAAATAATAAAGGAGAATCTAGAAAAAGGAAAAAGAAGAAAAAGAAGGAGCGTAAGAAAAGAAGAATATGCTAGTGTTTGAAAAAAATGATAAATGCATAAGAGAGAAAAAGAAGAGGGAATTGACTCATTTTGCTCGGTTACTCTTCTATCTATTCGTAGAAAAACATTGGGATTCTTATAGCAAAGAAGAAGAAGATTCTTTCTTCTCATTAGTTGAATTGGATGGGATGAAGAAGAAGAAGGAGATGGAAAACGAGAAAGAGCAAAAGAGGGATTCTAGATTTTCACGATTTCCTTCTCCTTTGAATACTTCACAACGCCTCCGTCTTCCGTCCATTTTGCTGGTTGATCCGTAAAGAAAATGAAGGAGAGAATATTCGCCTGAAAAGGGGTACATTTTAAGGTTACAAATAAAAATTAATGACTATCCAGTAGAAATTTTCAAAATTATTGAAATTCAAATAAAGATAGCTTCTCATGTTTTCGAAATTCGGACTCCAACACAGTGAATACTGCTGGAATTTCCAATTTTTTCAATTTTTTTAACTTTAGAAAACAGGAAAAATGTAGTGCTAACACTGAATTGGTGGAATGAATGAACCTAACTATTATAGTTTTGTGAAACATTTTTTTTGAATCACCCGAAATTTATCAAGAAACAACAACATTTCTCTCTGATTTTTTAAAAATCCACAGAATATTTTATTGCAAAAAGTTCATAATACTGTTCG</canonical>
            <polymorphic>TGTGCAACAGTGAAAAATGTAAAACATGGAAAATGAACACTTTAGAACCCGTAGTTTCAACATTTAAAAAGAGAGAAAAAGTACTCAGATGGACTTTAGACAATCTACATGACGTACAAAAAAGCAAAGTCCTTTTTTGTTGATTTTTTGAGAAGAGGGGGCGGTTTTTTGTGTCTCATCAACGTATTCTTCTACACTCATCAACTATGATAATCACGTGAAGAAAGAGAAGACGATCTAGTGAGAGTTTGTTTCTCACGGGGGCAAAAAATAATAAAGGAGAATCTAGAAAAAGGAAAAAGAAGAAAAAGAAGGAGCGTAAGAAAAGAAGAATATGCTAGTGTTTGAAAAAAATGATAAATGCATAAGAGAGAAAAAGAAGAGGGAATTGACTCATTTTGCTCGGTTACTCTTCTATCTATTCGTAGAAAAACATTGGGATTCTTATAGCAAAGAAGAAGAAGATTCTTTCTTCTCATTAGTTGAATTGGATGGGATGYAGAAGAAGAAGGAGATGGAAAACGAGAAAGAGCAAAAGAGGGATTCTAGATTTTCACGATTTCCTTCTCCTTTGAATACTTCACAACGCCTCCGTCTTCCGTCCATTTTGCTGGTTGATCCGTAAAGAAAATGAAGGAGAGAATATTCGCCTGAAAAGGGGTACATTTTAAGGTTACAAATAAAAATTAATGACTATCCAGTAGAAATTTTCAAAATTATTGAAATTCAAATAAAGATAGCTTCTCATGTTTTCGAAATTCGGACTCCAACACAGTGAATACTGCTGGAATTTCCAATTTTTTCAATTTTTTTAACTTTAGAAAACAGGAAAAATGTAGTGCTAACACTGAATTGGTGGAATGAATGAACCTAACTATTATAGTTTTGTGAAACATTTTTTTTGAATCACCCGAAATTTATCAAGAAACAACAACATTTCTCTCTGATTTTTTAAAAATCCACAGAATATTTTATTGCAAAAAGTTCATAATACTGTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGAAAAACATTGGGATTCTTA</pcr_primer_p1>
		<pcr_primer_p2>ACCTTAAAATGTACCCCTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAGAAAAACATTGGGATTCTTATAGCAAAGAAGAAGAAGATTCTTTCTTCTCATTAGTTGAATTGGATGGGATGAAGAAGAAGAAGGAGATGGAAAACGAGAAAGAGCAAAAGAGGGATTCTAGATTTTCACGATTTCCTTCTCCTTTGAATACTTCACAACGCCTCCGTCTTCCGTCCATTTTGCTGGTTGATCCGTAAAGAAAATGAAGGAGAGAATATTCGCCTGAAAAGGGGTACATTTTAAGGT</canonical_amplicon>
		<polymorphic_amplicon>GTAGAAAAACATTGGGATTCTTATAGCAAAGAAGAAGAAGATTCTTTCTTCTCATTAGTTGAATTGGATGGGATGYAGAAGAAGAAGGAGATGGAAAACGAGAAAGAGCAAAAGAGGGATTCTAGATTTTCACGATTTCCTTCTCCTTTGAATACTTCACAACGCCTCCGTCTTCCGTCCATTTTGCTGGTTGATCCGTAAAGAAAATGAAGGAGAGAATATTCGCCTGAAAAGGGGTACATTTTAAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9586</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>674396</contig_pos>
        <strand>+</strand>
        <context>ATGTTGAAAG[C/T]TCCGTAAATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTCTGAAATAAATTGGAGCATAAGTGGCAATTAGAATCAATGTTGAAAG</left_flank>
        <right_flank>TCCGTAAATGCACATAGCCATACTGTAAGCACAACTGGACTTGTGAAAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGACAAACCTCGCGTGCAGTGTTCCACATTTATAGAATCCTCCACAGTTGAAACTGGTGAAACACTCCAAAACTGCCAAACACACAACTGCAGATATATTGTGCTCTGCTGGGATTTGACTGGAAAACATTTCAGATTTTGAGGATGGTTGTGTCTGTGAAACTTGCCTAAAAACGATGAAAGATATTCCAACACATCCAACGGCTAAAGTGTTGAAAATGTGGATTTTTGAGATTTCGGAGATGCATCTGTAATTTTTTGTGTTGTGGTCTAGGCGAAAAAAAAACCGACTTACTTAGTTTTGTCACTCAAAAATGCGCAAACAAATCGGAATGGAAGATGAATCGCCAACATGAGTCCCAGGTAGAATCCGATTATTTTGATCTGAAATTTAAATTATTTGTTATATTTTAAAACTATATTTTCACTTACATCAAATCCTAGGACACTTCTGAAATAAATTGGAGCATAAGTGGCAATTAGAATCAATGTTGAAAGCTCCGTAAATGCACATAGCCATACTGTAAGCACAACTGGACTTGTGAAAATTTTGACATATGGGATTTCCATGTCATCCTTGATGTGAGATTCGGATTTGTTTCTCTGAATTTTTCCGAGCTCTTTGGCGCTGACACTTTTGTGTAAAGTTGGATCATCTTTGTAGACCAATGCCCAGATGATGAACACAGCGAGACATGCAGCAGCATGAAAGTAGAAGCTCCATTTCCACCCCAAATGACTCTCACAAATCTAAAAAACCACAAAACATTATTTCAAAAAACTGCAAAAAGACATAGGTCCCACCGAGATTTGAACTCGGGTCGCAGGATTCAGAGTCCTGAGTGCTAACCGCTACACCATGGAACCGACGGGAGAGAGGGGAGGCGAGGGGCAAGACAAGGCAAGCGCTCCCCGCTCGTCTTTCTCTCTCCGTCTCTTTGACTCACCACTCCGCTGACTCCGTTTGTAATGATGGACGAGATAGAGGTGAAAGAGGTG</canonical>
            <polymorphic>GAGACAAACCTCGCGTGCAGTGTTCCACATTTATAGAATCCTCCACAGTTGAAACTGGTGAAACACTCCAAAACTGCCAAACACACAACTGCAGATATATTGTGCTCTGCTGGGATTTGACTGGAAAACATTTCAGATTTTGAGGATGGTTGTGTCTGTGAAACTTGCCTAAAAACGATGAAAGATATTCCAACACATCCAACGGCTAAAGTGTTGAAAATGTGGATTTTTGAGATTTCGGAGATGCATCTGTAATTTTTTGTGTTGTGGTCTAGGCGAAAAAAAAACCGACTTACTTAGTTTTGTCACTCAAAAATGCGCAAACAAATCGGAATGGAAGATGAATCGCCAACATGAGTCCCAGGTAGAATCCGATTATTTTGATCTGAAATTTAAATTATTTGTTATATTTTAAAACTATATTTTCACTTACATCAAATCCTAGGACACTTCTGAAATAAATTGGAGCATAAGTGGCAATTAGAATCAATGTTGAAAGYTCCGTAAATGCACATAGCCATACTGTAAGCACAACTGGACTTGTGAAAATTTTGACATATGGGATTTCCATGTCATCCTTGATGTGAGATTCGGATTTGTTTCTCTGAATTTTTCCGAGCTCTTTGGCGCTGACACTTTTGTGTAAAGTTGGATCATCTTTGTAGACCAATGCCCAGATGATGAACACAGCGAGACATGCAGCAGCATGAAAGTAGAAGCTCCATTTCCACCCCAAATGACTCTCACAAATCTAAAAAACCACAAAACATTATTTCAAAAAACTGCAAAAAGACATAGGTCCCACCGAGATTTGAACTCGGGTCGCAGGATTCAGAGTCCTGAGTGCTAACCGCTACACCATGGAACCGACGGGAGAGAGGGGAGGCGAGGGGCAAGACAAGGCAAGCGCTCCCCGCTCGTCTTTCTCTCTCCGTCTCTTTGACTCACCACTCCGCTGACTCCGTTTGTAATGATGGACGAGATAGAGGTGAAAGAGGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>499 281 120 100</canonical_bands>
                <polymorphic_bands>619 281 100</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>294 281 205 102 100 18</canonical_bands>
                <polymorphic_bands>312 281 205 102 100</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACATCAAATCCTAGGACACTTC</pcr_primer_p1>
		<pcr_primer_p2>CATTGGTCTACAAAGATGATCC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TACATCAAATCCTAGGACACTTCTGAAATAAATTGGAGCATAAGTGGCAATTAGAATCAATGTTGAAAGCTCCGTAAATGCACATAGCCATACTGTAAGCACAACTGGACTTGTGAAAATTTTGACATATGGGATTTCCATGTCATCCTTGATGTGAGATTCGGATTTGTTTCTCTGAATTTTTCCGAGCTCTTTGGCGCTGACACTTTTGTGTAAAGTTGGATCATCTTTGTAGACCAATG</canonical_amplicon>
		<polymorphic_amplicon>TACATCAAATCCTAGGACACTTCTGAAATAAATTGGAGCATAAGTGGCAATTAGAATCAATGTTGAAAGYTCCGTAAATGCACATAGCCATACTGTAAGCACAACTGGACTTGTGAAAATTTTGACATATGGGATTTCCATGTCATCCTTGATGTGAGATTCGGATTTGTTTCTCTGAATTTTTCCGAGCTCTTTGGCGCTGACACTTTTGTGTAAAGTTGGATCATCTTTGTAGACCAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9587</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>676902</contig_pos>
        <strand>+</strand>
        <context>AAATATAGAA[A/G]GACTCACCCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTAGGTTTAGCGGTATCTTTCTCAAAATTTCCTCTTGAAAAATATAGAA</left_flank>
        <right_flank>GACTCACCCCATTCCAAATTTTCGTCTCACTGAAATCGTCCTTCATACAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAAAATTTCAATTCTAGCTCCAATTCTGATTTTTTATTCTCTAATCAAAAGTCGTGAGAATCAAAAATTTCTAGTTTCGTGGTTTTTCACAATAGGGTACTTTGCAGATAATGCCAACGTTTTTCTAATCTGAAACTAGTCCACAAGCTATAGGTTCTCAAGAAGTCAATAAATCCACTTGACATATTAATGAATATCAATCGGTAGTCACATGCAAATAAGGTACATACGTAATCAGACGAAGAATCACGTAGATGAATGTTGTCTGTCTGTGTGTCTGTTTATTTGTATTAAGCGGTTGGTTAACAACCTCTCAAATCAGTAATAACTTTGTTAGGTTACTGTAACGGTAGAATTTTGCAAAAAGTTCAGTTTCGACTATGCCGGAATATGGTCGTTATTGAATTTTTGAATTTTTTTTCTCCATAAATAATTGGTTACTGTAACAGTAGGTTTAGCGGTATCTTTCTCAAAATTTCCTCTTGAAAAATATAGAAAGACTCACCCCATTCCAAATTTTCGTCTCACTGAAATCGTCCTTCATACAAATGAATGTGAAATTTATGATGATATAATTTGAGCATACAGAAACGAGACACATAAAACTGACAAGCACAATGACGACTCGAAAATAGTTTCCCCATAATCGATTAATCATTTTTGAATCTAAAAAAATAAGATTTCGAATTTCACAGAAAACGAAAGAGAGAAATAGAAAACATATGATAGAGAGATAATAAATTATGTAATCCTCATAATAAGAAACAAAGAATCAGAGAACATAAAAAGAGAGAGGAAACGAGTTTCTAACATCGTATAAATGACAAAAACCGAGAAATGATAAATGGAAATTTTCTAATTCCATTTAAATGGAAACAACAGTTCTCTCGATTTCCCTTAATTTTTAAAACAAATTCGATCAGACAAGGGACTTCGATATAAAGTTCAGTCTCGATCTCTTTTCCGACGATTTTCATTTTTTTTCTTTTATCGTAAAA</canonical>
            <polymorphic>AACAAAATTTCAATTCTAGCTCCAATTCTGATTTTTTATTCTCTAATCAAAAGTCGTGAGAATCAAAAATTTCTAGTTTCGTGGTTTTTCACAATAGGGTACTTTGCAGATAATGCCAACGTTTTTCTAATCTGAAACTAGTCCACAAGCTATAGGTTCTCAAGAAGTCAATAAATCCACTTGACATATTAATGAATATCAATCGGTAGTCACATGCAAATAAGGTACATACGTAATCAGACGAAGAATCACGTAGATGAATGTTGTCTGTCTGTGTGTCTGTTTATTTGTATTAAGCGGTTGGTTAACAACCTCTCAAATCAGTAATAACTTTGTTAGGTTACTGTAACGGTAGAATTTTGCAAAAAGTTCAGTTTCGACTATGCCGGAATATGGTCGTTATTGAATTTTTGAATTTTTTTTCTCCATAAATAATTGGTTACTGTAACAGTAGGTTTAGCGGTATCTTTCTCAAAATTTCCTCTTGAAAAATATAGAARGACTCACCCCATTCCAAATTTTCGTCTCACTGAAATCGTCCTTCATACAAATGAATGTGAAATTTATGATGATATAATTTGAGCATACAGAAACGAGACACATAAAACTGACAAGCACAATGACGACTCGAAAATAGTTTCCCCATAATCGATTAATCATTTTTGAATCTAAAAAAATAAGATTTCGAATTTCACAGAAAACGAAAGAGAGAAATAGAAAACATATGATAGAGAGATAATAAATTATGTAATCCTCATAATAAGAAACAAAGAATCAGAGAACATAAAAAGAGAGAGGAAACGAGTTTCTAACATCGTATAAATGACAAAAACCGAGAAATGATAAATGGAAATTTTCTAATTCCATTTAAATGGAAACAACAGTTCTCTCGATTTCCCTTAATTTTTAAAACAAATTCGATCAGACAAGGGACTTCGATATAAAGTTCAGTCTCGATCTCTTTTCCGACGATTTTCATTTTTTTTCTTTTATCGTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAAGTTCAGTTTCGACTATG</pcr_primer_p1>
		<pcr_primer_p2>GTCAGTTTTATGTGTCTCGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAAAGTTCAGTTTCGACTATGCCGGAATATGGTCGTTATTGAATTTTTGAATTTTTTTTCTCCATAAATAATTGGTTACTGTAACAGTAGGTTTAGCGGTATCTTTCTCAAAATTTCCTCTTGAAAAATATAGAAAGACTCACCCCATTCCAAATTTTCGTCTCACTGAAATCGTCCTTCATACAAATGAATGTGAAATTTATGATGATATAATTTGAGCATACAGAAACGAGACACATAAAACTGAC</canonical_amplicon>
		<polymorphic_amplicon>CAAAAAGTTCAGTTTCGACTATGCCGGAATATGGTCGTTATTGAATTTTTGAATTTTTTTTCTCCATAAATAATTGGTTACTGTAACAGTAGGTTTAGCGGTATCTTTCTCAAAATTTCCTCTTGAAAAATATAGAARGACTCACCCCATTCCAAATTTTCGTCTCACTGAAATCGTCCTTCATACAAATGAATGTGAAATTTATGATGATATAATTTGAGCATACAGAAACGAGACACATAAAACTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9588</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>683160</contig_pos>
        <strand>+</strand>
        <context>CGGATATATT[G/T]TAGTTTCGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAATGTTTGGTTCTATGGAATTTGATCCCAGTCCTCAATCGGATATATT</left_flank>
        <right_flank>TAGTTTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAACTGGTGACCACTATGATGATCCGAAAATAATTTCCCCAGAGCCGGAACATTTGTCTTAAAGTCCTATAACATACGAAAAACACTTGAAAAAACTCAGGGCTGTATTCATGAACATTTACTTTTGTAAATAATTTTCTCTCAAAAATCAACTTCCATTTACCTTTTGGTACATGATTCAGTTGATTTTTTGAGAGTAAATGATTTACAAAAGTAAATTTCATGAATACGGCCTCAGATCTAAAAAGTGTTAGAAACGAAACAGTAATTAAAAAAAACTTTTCTTATGTCATTTTCTTTCTTTTATATGGTTTTCATCGAACAATTGACGAAACGATTGTTATGCTCTGTTTGTATCAAATGTTCCAGAAAAATGTAATCTTTAAGTTTTGATTTTTATAGAATTCATTGTGACAATACATAATATCAATATATTTTTTCTATTACAAAATGTTTGGTTCTATGGAATTTGATCCCAGTCCTCAATCGGATATATTGTAGTTTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCATCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAATACGAAATTCATGAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTGATTCACCTAGAAACTAAACATTT</canonical>
            <polymorphic>AGAAACTGGTGACCACTATGATGATCCGAAAATAATTTCCCCAGAGCCGGAACATTTGTCTTAAAGTCCTATAACATACGAAAAACACTTGAAAAAACTCAGGGCTGTATTCATGAACATTTACTTTTGTAAATAATTTTCTCTCAAAAATCAACTTCCATTTACCTTTTGGTACATGATTCAGTTGATTTTTTGAGAGTAAATGATTTACAAAAGTAAATTTCATGAATACGGCCTCAGATCTAAAAAGTGTTAGAAACGAAACAGTAATTAAAAAAAACTTTTCTTATGTCATTTTCTTTCTTTTATATGGTTTTCATCGAACAATTGACGAAACGATTGTTATGCTCTGTTTGTATCAAATGTTCCAGAAAAATGTAATCTTTAAGTTTTGATTTTTATAGAATTCATTGTGACAATACATAATATCAATATATTTTTTCTATTACAAAATGTTTGGTTCTATGGAATTTGATCCCAGTCCTCAATCGGATATATTKTAGTTTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCATCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAATACGAAATTCATGAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTGATTCACCTAGAAACTAAACATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATATGGTTTTCATCGAACAAT</pcr_primer_p1>
		<pcr_primer_p2>TTATTTACGGTTTTCTTTTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTATATGGTTTTCATCGAACAATTGACGAAACGATTGTTATGCTCTGTTTGTATCAAATGTTCCAGAAAAATGTAATCTTTAAGTTTTGATTTTTATAGAATTCATTGTGACAATACATAATATCAATATATTTTTTCTATTACAAAATGTTTGGTTCTATGGAATTTGATCCCAGTCCTCAATCGGATATATTGTAGTTTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAA</canonical_amplicon>
		<polymorphic_amplicon>TTATATGGTTTTCATCGAACAATTGACGAAACGATTGTTATGCTCTGTTTGTATCAAATGTTCCAGAAAAATGTAATCTTTAAGTTTTGATTTTTATAGAATTCATTGTGACAATACATAATATCAATATATTTTTTCTATTACAAAATGTTTGGTTCTATGGAATTTGATCCCAGTCCTCAATCGGATATATTKTAGTTTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9589</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>683195</contig_pos>
        <strand>+</strand>
        <context>AAGTTATAAA[A/C]GTTGAAAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCAATCGGATATATTGTAGTTTCGGAAATTGTAGATATTGAAGTTATAAA</left_flank>
        <right_flank>GTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCCCAGAGCCGGAACATTTGTCTTAAAGTCCTATAACATACGAAAAACACTTGAAAAAACTCAGGGCTGTATTCATGAACATTTACTTTTGTAAATAATTTTCTCTCAAAAATCAACTTCCATTTACCTTTTGGTACATGATTCAGTTGATTTTTTGAGAGTAAATGATTTACAAAAGTAAATTTCATGAATACGGCCTCAGATCTAAAAAGTGTTAGAAACGAAACAGTAATTAAAAAAAACTTTTCTTATGTCATTTTCTTTCTTTTATATGGTTTTCATCGAACAATTGACGAAACGATTGTTATGCTCTGTTTGTATCAAATGTTCCAGAAAAATGTAATCTTTAAGTTTTGATTTTTATAGAATTCATTGTGACAATACATAATATCAATATATTTTTTCTATTACAAAATGTTTGGTTCTATGGAATTTGATCCCAGTCCTCAATCGGATATATTGTAGTTTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCATCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAATACGAAATTCATGAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTGATTCACCTAGAAACTAAACATTTTAAAACCAGCAAAAATACAATTGAGGAACAAAACC</canonical>
            <polymorphic>TTTCCCCAGAGCCGGAACATTTGTCTTAAAGTCCTATAACATACGAAAAACACTTGAAAAAACTCAGGGCTGTATTCATGAACATTTACTTTTGTAAATAATTTTCTCTCAAAAATCAACTTCCATTTACCTTTTGGTACATGATTCAGTTGATTTTTTGAGAGTAAATGATTTACAAAAGTAAATTTCATGAATACGGCCTCAGATCTAAAAAGTGTTAGAAACGAAACAGTAATTAAAAAAAACTTTTCTTATGTCATTTTCTTTCTTTTATATGGTTTTCATCGAACAATTGACGAAACGATTGTTATGCTCTGTTTGTATCAAATGTTCCAGAAAAATGTAATCTTTAAGTTTTGATTTTTATAGAATTCATTGTGACAATACATAATATCAATATATTTTTTCTATTACAAAATGTTTGGTTCTATGGAATTTGATCCCAGTCCTCAATCGGATATATTGTAGTTTCGGAAATTGTAGATATTGAAGTTATAAAMGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCATCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAATACGAAATTCATGAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTGATTCACCTAGAAACTAAACATTTTAAAACCAGCAAAAATACAATTGAGGAACAAAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTATTACAAAATGTTTGGTTC</pcr_primer_p1>
		<pcr_primer_p2>CAACATTCTGTCCTTCATATTTT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TTTCTATTACAAAATGTTTGGTTCTATGGAATTTGATCCCAGTCCTCAATCGGATATATTGTAGTTTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCATCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTATTACAAAATGTTTGGTTCTATGGAATTTGATCCCAGTCCTCAATCGGATATATTGTAGTTTCGGAAATTGTAGATATTGAAGTTATAAAMGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCATCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9590</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>683251</contig_pos>
        <strand>+</strand>
        <context>TTAACATCCT[C/T]TTCCTTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCT</left_flank>
        <right_flank>TTCCTTTTTTGAATATTTCACAACACTTCCATCGTATTCTGTCCATTTTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAACTCAGGGCTGTATTCATGAACATTTACTTTTGTAAATAATTTTCTCTCAAAAATCAACTTCCATTTACCTTTTGGTACATGATTCAGTTGATTTTTTGAGAGTAAATGATTTACAAAAGTAAATTTCATGAATACGGCCTCAGATCTAAAAAGTGTTAGAAACGAAACAGTAATTAAAAAAAACTTTTCTTATGTCATTTTCTTTCTTTTATATGGTTTTCATCGAACAATTGACGAAACGATTGTTATGCTCTGTTTGTATCAAATGTTCCAGAAAAATGTAATCTTTAAGTTTTGATTTTTATAGAATTCATTGTGACAATACATAATATCAATATATTTTTTCTATTACAAAATGTTTGGTTCTATGGAATTTGATCCCAGTCCTCAATCGGATATATTGTAGTTTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCATCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAATACGAAATTCATGAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTGATTCACCTAGAAACTAAACATTTTAAAACCAGCAAAAATACAATTGAGGAACAAAACCAATGCCAGCATTGAGTTAGATTCTAATTTGTTATTCCATTGAAATCGAGAAATATG</canonical>
            <polymorphic>AAAAAACTCAGGGCTGTATTCATGAACATTTACTTTTGTAAATAATTTTCTCTCAAAAATCAACTTCCATTTACCTTTTGGTACATGATTCAGTTGATTTTTTGAGAGTAAATGATTTACAAAAGTAAATTTCATGAATACGGCCTCAGATCTAAAAAGTGTTAGAAACGAAACAGTAATTAAAAAAAACTTTTCTTATGTCATTTTCTTTCTTTTATATGGTTTTCATCGAACAATTGACGAAACGATTGTTATGCTCTGTTTGTATCAAATGTTCCAGAAAAATGTAATCTTTAAGTTTTGATTTTTATAGAATTCATTGTGACAATACATAATATCAATATATTTTTTCTATTACAAAATGTTTGGTTCTATGGAATTTGATCCCAGTCCTCAATCGGATATATTGTAGTTTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTYTTCCTTTTTTGAATATTTCACAACACTTCCATCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAATACGAAATTCATGAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTGATTCACCTAGAAACTAAACATTTTAAAACCAGCAAAAATACAATTGAGGAACAAAACCAATGCCAGCATTGAGTTAGATTCTAATTTGTTATTCCATTGAAATCGAGAAATATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGGAAATTGTAGATATTGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCGACAGAATTAGATTTATGAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCATCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAA</canonical_amplicon>
		<polymorphic_amplicon>TTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTYTTCCTTTTTTGAATATTTCACAACACTTCCATCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9591</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>683282</contig_pos>
        <strand>+</strand>
        <context>CAACACTTCC[A/G]TCGTMTTCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCC</left_flank>
        <right_flank>TCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTTGTAAATAATTTTCTCTCAAAAATCAACTTCCATTTACCTTTTGGTACATGATTCAGTTGATTTTTTGAGAGTAAATGATTTACAAAAGTAAATTTCATGAATACGGCCTCAGATCTAAAAAGTGTTAGAAACGAAACAGTAATTAAAAAAAACTTTTCTTATGTCATTTTCTTTCTTTTATATGGTTTTCATCGAACAATTGACGAAACGATTGTTATGCTCTGTTTGTATCAAATGTTCCAGAAAAATGTAATCTTTAAGTTTTGATTTTTATAGAATTCATTGTGACAATACATAATATCAATATATTTTTTCTATTACAAAATGTTTGGTTCTATGGAATTTGATCCCAGTCCTCAATCGGATATATTGTAGTTTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCATCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAATACGAAATTCATGAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTGATTCACCTAGAAACTAAACATTTTAAAACCAGCAAAAATACAATTGAGGAACAAAACCAATGCCAGCATTGAGTTAGATTCTAATTTGTTATTCCATTGAAATCGAGAAATATGGCAAATCCAATAACAACAAAACCTTTACAAT</canonical>
            <polymorphic>ACTTTTGTAAATAATTTTCTCTCAAAAATCAACTTCCATTTACCTTTTGGTACATGATTCAGTTGATTTTTTGAGAGTAAATGATTTACAAAAGTAAATTTCATGAATACGGCCTCAGATCTAAAAAGTGTTAGAAACGAAACAGTAATTAAAAAAAACTTTTCTTATGTCATTTTCTTTCTTTTATATGGTTTTCATCGAACAATTGACGAAACGATTGTTATGCTCTGTTTGTATCAAATGTTCCAGAAAAATGTAATCTTTAAGTTTTGATTTTTATAGAATTCATTGTGACAATACATAATATCAATATATTTTTTCTATTACAAAATGTTTGGTTCTATGGAATTTGATCCCAGTCCTCAATCGGATATATTGTAGTTTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCRTCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAATACGAAATTCATGAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTGATTCACCTAGAAACTAAACATTTTAAAACCAGCAAAAATACAATTGAGGAACAAAACCAATGCCAGCATTGAGTTAGATTCTAATTTGTTATTCCATTGAAATCGAGAAATATGGCAAATCCAATAACAACAAAACCTTTACAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGGAAATTGTAGATATTGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCGACAGAATTAGATTTATGAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCATCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAA</canonical_amplicon>
		<polymorphic_amplicon>TTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCRTCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9592</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>683287</contig_pos>
        <strand>+</strand>
        <context>CTTCCRTCGT[A/C]TTCTGTCCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCATCGT</left_flank>
        <right_flank>TTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTAAATAATTTTCTCTCAAAAATCAACTTCCATTTACCTTTTGGTACATGATTCAGTTGATTTTTTGAGAGTAAATGATTTACAAAAGTAAATTTCATGAATACGGCCTCAGATCTAAAAAGTGTTAGAAACGAAACAGTAATTAAAAAAAACTTTTCTTATGTCATTTTCTTTCTTTTATATGGTTTTCATCGAACAATTGACGAAACGATTGTTATGCTCTGTTTGTATCAAATGTTCCAGAAAAATGTAATCTTTAAGTTTTGATTTTTATAGAATTCATTGTGACAATACATAATATCAATATATTTTTTCTATTACAAAATGTTTGGTTCTATGGAATTTGATCCCAGTCCTCAATCGGATATATTGTAGTTTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCATCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAATACGAAATTCATGAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTGATTCACCTAGAAACTAAACATTTTAAAACCAGCAAAAATACAATTGAGGAACAAAACCAATGCCAGCATTGAGTTAGATTCTAATTTGTTATTCCATTGAAATCGAGAAATATGGCAAATCCAATAACAACAAAACCTTTACAATTTCAT</canonical>
            <polymorphic>TGTAAATAATTTTCTCTCAAAAATCAACTTCCATTTACCTTTTGGTACATGATTCAGTTGATTTTTTGAGAGTAAATGATTTACAAAAGTAAATTTCATGAATACGGCCTCAGATCTAAAAAGTGTTAGAAACGAAACAGTAATTAAAAAAAACTTTTCTTATGTCATTTTCTTTCTTTTATATGGTTTTCATCGAACAATTGACGAAACGATTGTTATGCTCTGTTTGTATCAAATGTTCCAGAAAAATGTAATCTTTAAGTTTTGATTTTTATAGAATTCATTGTGACAATACATAATATCAATATATTTTTTCTATTACAAAATGTTTGGTTCTATGGAATTTGATCCCAGTCCTCAATCGGATATATTGTAGTTTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCATCGTMTTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAATACGAAATTCATGAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTGATTCACCTAGAAACTAAACATTTTAAAACCAGCAAAAATACAATTGAGGAACAAAACCAATGCCAGCATTGAGTTAGATTCTAATTTGTTATTCCATTGAAATCGAGAAATATGGCAAATCCAATAACAACAAAACCTTTACAATTTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGGAAATTGTAGATATTGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCGACAGAATTAGATTTATGAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCATCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAA</canonical_amplicon>
		<polymorphic_amplicon>TTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCATCGTMTTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9593</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>683416</contig_pos>
        <strand>+</strand>
        <context>CTGTCGAATA[C/T]GAAATTCRTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAATA</left_flank>
        <right_flank>GAAATTCATGAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACGAAACAGTAATTAAAAAAAACTTTTCTTATGTCATTTTCTTTCTTTTATATGGTTTTCATCGAACAATTGACGAAACGATTGTTATGCTCTGTTTGTATCAAATGTTCCAGAAAAATGTAATCTTTAAGTTTTGATTTTTATAGAATTCATTGTGACAATACATAATATCAATATATTTTTTCTATTACAAAATGTTTGGTTCTATGGAATTTGATCCCAGTCCTCAATCGGATATATTGTAGTTTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCATCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAATACGAAATTCATGAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTGATTCACCTAGAAACTAAACATTTTAAAACCAGCAAAAATACAATTGAGGAACAAAACCAATGCCAGCATTGAGTTAGATTCTAATTTGTTATTCCATTGAAATCGAGAAATATGGCAAATCCAATAACAACAAAACCTTTACAATTTCATCTGAATTTATCTCGGTTTTTGTAAAATATATCAAGAAGCGATTAACTGATAGAATGTATTTAAACTGTAATGAAAACTTTATCAGTTGATTACTTCTTGATATCTTGTACACGAGCCGAGATAAATTGG</canonical>
            <polymorphic>AAACGAAACAGTAATTAAAAAAAACTTTTCTTATGTCATTTTCTTTCTTTTATATGGTTTTCATCGAACAATTGACGAAACGATTGTTATGCTCTGTTTGTATCAAATGTTCCAGAAAAATGTAATCTTTAAGTTTTGATTTTTATAGAATTCATTGTGACAATACATAATATCAATATATTTTTTCTATTACAAAATGTTTGGTTCTATGGAATTTGATCCCAGTCCTCAATCGGATATATTGTAGTTTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCATCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAATAYGAAATTCATGAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTGATTCACCTAGAAACTAAACATTTTAAAACCAGCAAAAATACAATTGAGGAACAAAACCAATGCCAGCATTGAGTTAGATTCTAATTTGTTATTCCATTGAAATCGAGAAATATGGCAAATCCAATAACAACAAAACCTTTACAATTTCATCTGAATTTATCTCGGTTTTTGTAAAATATATCAAGAAGCGATTAACTGATAGAATGTATTTAAACTGTAATGAAAACTTTATCAGTTGATTACTTCTTGATATCTTGTACACGAGCCGAGATAAATTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATATGAAGGACAGAATGTTG</pcr_primer_p1>
		<pcr_primer_p2>TCCAATTTACCAAGTGTATTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAATACGAAATTCATGAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGA</canonical_amplicon>
		<polymorphic_amplicon>AAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAATAYGAAATTCATGAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9594</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>683424</contig_pos>
        <strand>+</strand>
        <context>TAYGAAATTC[A/G]TGAAACCGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAATACGAAATTC</left_flank>
        <right_flank>TGAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTAATTAAAAAAAACTTTTCTTATGTCATTTTCTTTCTTTTATATGGTTTTCATCGAACAATTGACGAAACGATTGTTATGCTCTGTTTGTATCAAATGTTCCAGAAAAATGTAATCTTTAAGTTTTGATTTTTATAGAATTCATTGTGACAATACATAATATCAATATATTTTTTCTATTACAAAATGTTTGGTTCTATGGAATTTGATCCCAGTCCTCAATCGGATATATTGTAGTTTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCATCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAATACGAAATTCATGAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTGATTCACCTAGAAACTAAACATTTTAAAACCAGCAAAAATACAATTGAGGAACAAAACCAATGCCAGCATTGAGTTAGATTCTAATTTGTTATTCCATTGAAATCGAGAAATATGGCAAATCCAATAACAACAAAACCTTTACAATTTCATCTGAATTTATCTCGGTTTTTGTAAAATATATCAAGAAGCGATTAACTGATAGAATGTATTTAAACTGTAATGAAAACTTTATCAGTTGATTACTTCTTGATATCTTGTACACGAGCCGAGATAAATTGGATCAAAAT</canonical>
            <polymorphic>CAGTAATTAAAAAAAACTTTTCTTATGTCATTTTCTTTCTTTTATATGGTTTTCATCGAACAATTGACGAAACGATTGTTATGCTCTGTTTGTATCAAATGTTCCAGAAAAATGTAATCTTTAAGTTTTGATTTTTATAGAATTCATTGTGACAATACATAATATCAATATATTTTTTCTATTACAAAATGTTTGGTTCTATGGAATTTGATCCCAGTCCTCAATCGGATATATTGTAGTTTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCATCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAATACGAAATTCRTGAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTGATTCACCTAGAAACTAAACATTTTAAAACCAGCAAAAATACAATTGAGGAACAAAACCAATGCCAGCATTGAGTTAGATTCTAATTTGTTATTCCATTGAAATCGAGAAATATGGCAAATCCAATAACAACAAAACCTTTACAATTTCATCTGAATTTATCTCGGTTTTTGTAAAATATATCAAGAAGCGATTAACTGATAGAATGTATTTAAACTGTAATGAAAACTTTATCAGTTGATTACTTCTTGATATCTTGTACACGAGCCGAGATAAATTGGATCAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>498 304 155 43</canonical_bands>
                <polymorphic_bands>541 304 155</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>499 303 147 43 8</canonical_bands>
                <polymorphic_bands>542 303 147 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATATGAAGGACAGAATGTTG</pcr_primer_p1>
		<pcr_primer_p2>TCCAATTTACCAAGTGTATTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAATACGAAATTCATGAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGA</canonical_amplicon>
		<polymorphic_amplicon>AAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAATACGAAATTCRTGAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9595</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>683535</contig_pos>
        <strand>+</strand>
        <context>GAGCGGGACC[A/G]GAGAATAGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACC</left_flank>
        <right_flank>GAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTAATCTTTAAGTTTTGATTTTTATAGAATTCATTGTGACAATACATAATATCAATATATTTTTTCTATTACAAAATGTTTGGTTCTATGGAATTTGATCCCAGTCCTCAATCGGATATATTGTAGTTTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCATCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAATACGAAATTCATGAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTGATTCACCTAGAAACTAAACATTTTAAAACCAGCAAAAATACAATTGAGGAACAAAACCAATGCCAGCATTGAGTTAGATTCTAATTTGTTATTCCATTGAAATCGAGAAATATGGCAAATCCAATAACAACAAAACCTTTACAATTTCATCTGAATTTATCTCGGTTTTTGTAAAATATATCAAGAAGCGATTAACTGATAGAATGTATTTAAACTGTAATGAAAACTTTATCAGTTGATTACTTCTTGATATCTTGTACACGAGCCGAGATAAATTGGATCAAAATAAAAAGTATGGAAGGGCCTTTTCAGTAACGAATAAAATGAAGATATTCCTACTCTATCATTTCGTTGAAACCGGAAATTATGTTTTTATTTTTACCTTGAATGCAACGTTC</canonical>
            <polymorphic>ATGTAATCTTTAAGTTTTGATTTTTATAGAATTCATTGTGACAATACATAATATCAATATATTTTTTCTATTACAAAATGTTTGGTTCTATGGAATTTGATCCCAGTCCTCAATCGGATATATTGTAGTTTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCATCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAATACGAAATTCATGAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCRGAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTGATTCACCTAGAAACTAAACATTTTAAAACCAGCAAAAATACAATTGAGGAACAAAACCAATGCCAGCATTGAGTTAGATTCTAATTTGTTATTCCATTGAAATCGAGAAATATGGCAAATCCAATAACAACAAAACCTTTACAATTTCATCTGAATTTATCTCGGTTTTTGTAAAATATATCAAGAAGCGATTAACTGATAGAATGTATTTAAACTGTAATGAAAACTTTATCAGTTGATTACTTCTTGATATCTTGTACACGAGCCGAGATAAATTGGATCAAAATAAAAAGTATGGAAGGGCCTTTTCAGTAACGAATAAAATGAAGATATTCCTACTCTATCATTTCGTTGAAACCGGAAATTATGTTTTTATTTTTACCTTGAATGCAACGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>462 394 103 41</canonical_bands>
                <polymorphic_bands>565 394 41</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>462 395 103 40</canonical_bands>
                <polymorphic_bands>565 395 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAACCGGTAACTTACAAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TTGCTGGTTTTAAAATGTTTAGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTGATTCACCTAGAAACTAAACATTTTAAAACCAGCAA</canonical_amplicon>
		<polymorphic_amplicon>GAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCRGAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTGATTCACCTAGAAACTAAACATTTTAAAACCAGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9596</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>683586</contig_pos>
        <strand>+</strand>
        <context>TTACGGTAGA[G/T]GCGAATTGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGA</left_flank>
        <right_flank>GCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCAATATATTTTTTCTATTACAAAATGTTTGGTTCTATGGAATTTGATCCCAGTCCTCAATCGGATATATTGTAGTTTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCATCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAATACGAAATTCATGAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTGATTCACCTAGAAACTAAACATTTTAAAACCAGCAAAAATACAATTGAGGAACAAAACCAATGCCAGCATTGAGTTAGATTCTAATTTGTTATTCCATTGAAATCGAGAAATATGGCAAATCCAATAACAACAAAACCTTTACAATTTCATCTGAATTTATCTCGGTTTTTGTAAAATATATCAAGAAGCGATTAACTGATAGAATGTATTTAAACTGTAATGAAAACTTTATCAGTTGATTACTTCTTGATATCTTGTACACGAGCCGAGATAAATTGGATCAAAATAAAAAGTATGGAAGGGCCTTTTCAGTAACGAATAAAATGAAGATATTCCTACTCTATCATTTCGTTGAAACCGGAAATTATGTTTTTATTTTTACCTTGAATGCAACGTTCCACATTTATAAAATCCTCCACTATTGAAACTGATGAAACATTCTAGAATCG</canonical>
            <polymorphic>TATCAATATATTTTTTCTATTACAAAATGTTTGGTTCTATGGAATTTGATCCCAGTCCTCAATCGGATATATTGTAGTTTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCATCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAATACGAAATTCATGAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAKGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTGATTCACCTAGAAACTAAACATTTTAAAACCAGCAAAAATACAATTGAGGAACAAAACCAATGCCAGCATTGAGTTAGATTCTAATTTGTTATTCCATTGAAATCGAGAAATATGGCAAATCCAATAACAACAAAACCTTTACAATTTCATCTGAATTTATCTCGGTTTTTGTAAAATATATCAAGAAGCGATTAACTGATAGAATGTATTTAAACTGTAATGAAAACTTTATCAGTTGATTACTTCTTGATATCTTGTACACGAGCCGAGATAAATTGGATCAAAATAAAAAGTATGGAAGGGCCTTTTCAGTAACGAATAAAATGAAGATATTCCTACTCTATCATTTCGTTGAAACCGGAAATTATGTTTTTATTTTTACCTTGAATGCAACGTTCCACATTTATAAAATCCTCCACTATTGAAACTGATGAAACATTCTAGAATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACCGGTAACTTACAAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TTGCTGGTTTTAAAATGTTTAGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTGATTCACCTAGAAACTAAACATTTTAAAACCAGCAA</canonical_amplicon>
		<polymorphic_amplicon>GAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAKGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTGATTCACCTAGAAACTAAACATTTTAAAACCAGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9597</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>683609</contig_pos>
        <strand>+</strand>
        <context>GAAAGTTTAG[A/G]AGTGTCATTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAG</left_flank>
        <right_flank>AGTGTCATTGTCATGAGTGTTACTAGTGATTCACCTAGAAACTAAACATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATGTTTGGTTCTATGGAATTTGATCCCAGTCCTCAATCGGATATATTGTAGTTTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCATCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAATACGAAATTCATGAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTGATTCACCTAGAAACTAAACATTTTAAAACCAGCAAAAATACAATTGAGGAACAAAACCAATGCCAGCATTGAGTTAGATTCTAATTTGTTATTCCATTGAAATCGAGAAATATGGCAAATCCAATAACAACAAAACCTTTACAATTTCATCTGAATTTATCTCGGTTTTTGTAAAATATATCAAGAAGCGATTAACTGATAGAATGTATTTAAACTGTAATGAAAACTTTATCAGTTGATTACTTCTTGATATCTTGTACACGAGCCGAGATAAATTGGATCAAAATAAAAAGTATGGAAGGGCCTTTTCAGTAACGAATAAAATGAAGATATTCCTACTCTATCATTTCGTTGAAACCGGAAATTATGTTTTTATTTTTACCTTGAATGCAACGTTCCACATTTATAAAATCCTCCACTATTGAAACTGATGAAACATTCTAGAATCGCCAAGCATACCACAGCAGAGATA</canonical>
            <polymorphic>AAAATGTTTGGTTCTATGGAATTTGATCCCAGTCCTCAATCGGATATATTGTAGTTTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCATCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAATACGAAATTCATGAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGRAGTGTCATTGTCATGAGTGTTACTAGTGATTCACCTAGAAACTAAACATTTTAAAACCAGCAAAAATACAATTGAGGAACAAAACCAATGCCAGCATTGAGTTAGATTCTAATTTGTTATTCCATTGAAATCGAGAAATATGGCAAATCCAATAACAACAAAACCTTTACAATTTCATCTGAATTTATCTCGGTTTTTGTAAAATATATCAAGAAGCGATTAACTGATAGAATGTATTTAAACTGTAATGAAAACTTTATCAGTTGATTACTTCTTGATATCTTGTACACGAGCCGAGATAAATTGGATCAAAATAAAAAGTATGGAAGGGCCTTTTCAGTAACGAATAAAATGAAGATATTCCTACTCTATCATTTCGTTGAAACCGGAAATTATGTTTTTATTTTTACCTTGAATGCAACGTTCCACATTTATAAAATCCTCCACTATTGAAACTGATGAAACATTCTAGAATCGCCAAGCATACCACAGCAGAGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACCGGTAACTTACAAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TTGCTGGTTTTAAAATGTTTAGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTGATTCACCTAGAAACTAAACATTTTAAAACCAGCAA</canonical_amplicon>
		<polymorphic_amplicon>GAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGRAGTGTCATTGTCATGAGTGTTACTAGTGATTCACCTAGAAACTAAACATTTTAAAACCAGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9598</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>683631</contig_pos>
        <strand>+</strand>
        <context>CATGAGTGTT[A/G]CTAGTGWTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTT</left_flank>
        <right_flank>CTAGTGATTCACCTAGAAACTAAACATTTTAAAACCAGCAAAAATACAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGATCCCAGTCCTCAATCGGATATATTGTAGTTTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCATCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAATACGAAATTCATGAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTGATTCACCTAGAAACTAAACATTTTAAAACCAGCAAAAATACAATTGAGGAACAAAACCAATGCCAGCATTGAGTTAGATTCTAATTTGTTATTCCATTGAAATCGAGAAATATGGCAAATCCAATAACAACAAAACCTTTACAATTTCATCTGAATTTATCTCGGTTTTTGTAAAATATATCAAGAAGCGATTAACTGATAGAATGTATTTAAACTGTAATGAAAACTTTATCAGTTGATTACTTCTTGATATCTTGTACACGAGCCGAGATAAATTGGATCAAAATAAAAAGTATGGAAGGGCCTTTTCAGTAACGAATAAAATGAAGATATTCCTACTCTATCATTTCGTTGAAACCGGAAATTATGTTTTTATTTTTACCTTGAATGCAACGTTCCACATTTATAAAATCCTCCACTATTGAAACTGATGAAACATTCTAGAATCGCCAAGCATACCACAGCAGAGATATTGTGTTCGGCTGGAATATATC</canonical>
            <polymorphic>TTGATCCCAGTCCTCAATCGGATATATTGTAGTTTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCATCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAATACGAAATTCATGAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTRCTAGTGATTCACCTAGAAACTAAACATTTTAAAACCAGCAAAAATACAATTGAGGAACAAAACCAATGCCAGCATTGAGTTAGATTCTAATTTGTTATTCCATTGAAATCGAGAAATATGGCAAATCCAATAACAACAAAACCTTTACAATTTCATCTGAATTTATCTCGGTTTTTGTAAAATATATCAAGAAGCGATTAACTGATAGAATGTATTTAAACTGTAATGAAAACTTTATCAGTTGATTACTTCTTGATATCTTGTACACGAGCCGAGATAAATTGGATCAAAATAAAAAGTATGGAAGGGCCTTTTCAGTAACGAATAAAATGAAGATATTCCTACTCTATCATTTCGTTGAAACCGGAAATTATGTTTTTATTTTTACCTTGAATGCAACGTTCCACATTTATAAAATCCTCCACTATTGAAACTGATGAAACATTCTAGAATCGCCAAGCATACCACAGCAGAGATATTGTGTTCGGCTGGAATATATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACTAGT</site>
                <isoschizomers>
                    <enzyme>AhlI</enzyme>
                    <enzyme>BcuI</enzyme>
                    <enzyme>SpeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>321 301 195 183</canonical_bands>
                <polymorphic_bands>516 301 183</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACACTTGGTAAATTGGATAGC</pcr_primer_p1>
		<pcr_primer_p2>CAGATGAAATTGTAAAGGTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTGATTCACCTAGAAACTAAACATTTTAAAACCAGCAAAAATACAATTGAGGAACAAAACCAATGCCAGCATTGAGTTAGATTCTAATTTGTTATTCCATTGAAATCGAGAAATATGGCAAATCCAATAACAACAAAACCTTTACAATTTCATCTG</canonical_amplicon>
		<polymorphic_amplicon>ATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTRCTAGTGATTCACCTAGAAACTAAACATTTTAAAACCAGCAAAAATACAATTGAGGAACAAAACCAATGCCAGCATTGAGTTAGATTCTAATTTGTTATTCCATTGAAATCGAGAAATATGGCAAATCCAATAACAACAAAACCTTTACAATTTCATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9599</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>683638</contig_pos>
        <strand>+</strand>
        <context>GTTRCTAGTG[A/T]TTCACCTAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTG</left_flank>
        <right_flank>TTCACCTAGAAACTAAACATTTTAAAACCAGCAAAAATACAATTGAGGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTCCTCAATCGGATATATTGTAGTTTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCATCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAATACGAAATTCATGAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTGATTCACCTAGAAACTAAACATTTTAAAACCAGCAAAAATACAATTGAGGAACAAAACCAATGCCAGCATTGAGTTAGATTCTAATTTGTTATTCCATTGAAATCGAGAAATATGGCAAATCCAATAACAACAAAACCTTTACAATTTCATCTGAATTTATCTCGGTTTTTGTAAAATATATCAAGAAGCGATTAACTGATAGAATGTATTTAAACTGTAATGAAAACTTTATCAGTTGATTACTTCTTGATATCTTGTACACGAGCCGAGATAAATTGGATCAAAATAAAAAGTATGGAAGGGCCTTTTCAGTAACGAATAAAATGAAGATATTCCTACTCTATCATTTCGTTGAAACCGGAAATTATGTTTTTATTTTTACCTTGAATGCAACGTTCCACATTTATAAAATCCTCCACTATTGAAACTGATGAAACATTCTAGAATCGCCAAGCATACCACAGCAGAGATATTGTGTTCGGCTGGAATATATCTGAAATT</canonical>
            <polymorphic>CAGTCCTCAATCGGATATATTGTAGTTTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCATCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAATACGAAATTCATGAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTGWTTCACCTAGAAACTAAACATTTTAAAACCAGCAAAAATACAATTGAGGAACAAAACCAATGCCAGCATTGAGTTAGATTCTAATTTGTTATTCCATTGAAATCGAGAAATATGGCAAATCCAATAACAACAAAACCTTTACAATTTCATCTGAATTTATCTCGGTTTTTGTAAAATATATCAAGAAGCGATTAACTGATAGAATGTATTTAAACTGTAATGAAAACTTTATCAGTTGATTACTTCTTGATATCTTGTACACGAGCCGAGATAAATTGGATCAAAATAAAAAGTATGGAAGGGCCTTTTCAGTAACGAATAAAATGAAGATATTCCTACTCTATCATTTCGTTGAAACCGGAAATTATGTTTTTATTTTTACCTTGAATGCAACGTTCCACATTTATAAAATCCTCCACTATTGAAACTGATGAAACATTCTAGAATCGCCAAGCATACCACAGCAGAGATATTGTGTTCGGCTGGAATATATCTGAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>367 339 140 77 57 15 5</canonical_bands>
                <polymorphic_bands>367 339 217 57 15 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>367 359 140 77 57</canonical_bands>
                <polymorphic_bands>367 359 217 57</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACACTTGGTAAATTGGATAGC</pcr_primer_p1>
		<pcr_primer_p2>CAGATGAAATTGTAAAGGTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTGATTCACCTAGAAACTAAACATTTTAAAACCAGCAAAAATACAATTGAGGAACAAAACCAATGCCAGCATTGAGTTAGATTCTAATTTGTTATTCCATTGAAATCGAGAAATATGGCAAATCCAATAACAACAAAACCTTTACAATTTCATCTG</canonical_amplicon>
		<polymorphic_amplicon>ATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTGWTTCACCTAGAAACTAAACATTTTAAAACCAGCAAAAATACAATTGAGGAACAAAACCAATGCCAGCATTGAGTTAGATTCTAATTTGTTATTCCATTGAAATCGAGAAATATGGCAAATCCAATAACAACAAAACCTTTACAATTTCATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9600</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>686457</contig_pos>
        <strand>+</strand>
        <context>TGAAAAAATT[A/C]CAGATTYAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATT</left_flank>
        <right_flank>CAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTCGCTTAAGAGGTACCTGGCTCCATATCTAACATAGAGAAAATTAATGGGAAACGTTCCGATCATGGTTCCAAACGCGACTGCCCATAAAATGTACTTCTTTTCAGTAGGACTGTAGTCATAGATGCTTTTGAGAGTCTGAAAATATTTTATTGTATTTTTAAAATTTATTTTTCCTTCAATTCATTAAAAAAAAACCTTATTTCCGTTATAGACAGAGAAACTCGAGTTTGAATTTGTTTAAAAAAATAAAATGTTTCAAAATGAAGATGAAATTTTTCAATTTGGTGGACTTTCAATTTTTGAGTAAAATGAAGACTCACCCCATTCCTATCATCAATCGTTACACTGAAATCGTCCTTCATACAAATGAATGTGAAATTTATGATTATATAATTCGAGCATACAGAAACCAAGCACAAAAAACTCATGAGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATAT</canonical>
            <polymorphic>GTTTTCGCTTAAGAGGTACCTGGCTCCATATCTAACATAGAGAAAATTAATGGGAAACGTTCCGATCATGGTTCCAAACGCGACTGCCCATAAAATGTACTTCTTTTCAGTAGGACTGTAGTCATAGATGCTTTTGAGAGTCTGAAAATATTTTATTGTATTTTTAAAATTTATTTTTCCTTCAATTCATTAAAAAAAAACCTTATTTCCGTTATAGACAGAGAAACTCGAGTTTGAATTTGTTTAAAAAAATAAAATGTTTCAAAATGAAGATGAAATTTTTCAATTTGGTGGACTTTCAATTTTTGAGTAAAATGAAGACTCACCCCATTCCTATCATCAATCGTTACACTGAAATCGTCCTTCATACAAATGAATGTGAAATTTATGATTATATAATTCGAGCATACAGAAACCAAGCACAAAAAACTCATGAGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTMCAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCACTATGATGATTCGAAAATA</pcr_primer_p1>
		<pcr_primer_p2>TTTGACCTAATTCATTGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAA</canonical_amplicon>
		<polymorphic_amplicon>AGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTMCAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9601</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>686464</contig_pos>
        <strand>+</strand>
        <context>ATTMCAGATT[C/T]AAGMATTCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATT</left_flank>
        <right_flank>AAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTAAGAGGTACCTGGCTCCATATCTAACATAGAGAAAATTAATGGGAAACGTTCCGATCATGGTTCCAAACGCGACTGCCCATAAAATGTACTTCTTTTCAGTAGGACTGTAGTCATAGATGCTTTTGAGAGTCTGAAAATATTTTATTGTATTTTTAAAATTTATTTTTCCTTCAATTCATTAAAAAAAAACCTTATTTCCGTTATAGACAGAGAAACTCGAGTTTGAATTTGTTTAAAAAAATAAAATGTTTCAAAATGAAGATGAAATTTTTCAATTTGGTGGACTTTCAATTTTTGAGTAAAATGAAGACTCACCCCATTCCTATCATCAATCGTTACACTGAAATCGTCCTTCATACAAATGAATGTGAAATTTATGATTATATAATTCGAGCATACAGAAACCAAGCACAAAAAACTCATGAGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTT</canonical>
            <polymorphic>CTTAAGAGGTACCTGGCTCCATATCTAACATAGAGAAAATTAATGGGAAACGTTCCGATCATGGTTCCAAACGCGACTGCCCATAAAATGTACTTCTTTTCAGTAGGACTGTAGTCATAGATGCTTTTGAGAGTCTGAAAATATTTTATTGTATTTTTAAAATTTATTTTTCCTTCAATTCATTAAAAAAAAACCTTATTTCCGTTATAGACAGAGAAACTCGAGTTTGAATTTGTTTAAAAAAATAAAATGTTTCAAAATGAAGATGAAATTTTTCAATTTGGTGGACTTTCAATTTTTGAGTAAAATGAAGACTCACCCCATTCCTATCATCAATCGTTACACTGAAATCGTCCTTCATACAAATGAATGTGAAATTTATGATTATATAATTCGAGCATACAGAAACCAAGCACAAAAAACTCATGAGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTYAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>504 182 131 127 56</canonical_bands>
                <polymorphic_bands>560 182 131 127</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>504 440 56</canonical_bands>
                <polymorphic_bands>560 440</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCACTATGATGATTCGAAAATA</pcr_primer_p1>
		<pcr_primer_p2>TTTGACCTAATTCATTGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAA</canonical_amplicon>
		<polymorphic_amplicon>AGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTYAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9602</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>686468</contig_pos>
        <strand>+</strand>
        <context>CAGATTYAAG[A/C]ATTCTAACTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAG</left_flank>
        <right_flank>ATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGGTACCTGGCTCCATATCTAACATAGAGAAAATTAATGGGAAACGTTCCGATCATGGTTCCAAACGCGACTGCCCATAAAATGTACTTCTTTTCAGTAGGACTGTAGTCATAGATGCTTTTGAGAGTCTGAAAATATTTTATTGTATTTTTAAAATTTATTTTTCCTTCAATTCATTAAAAAAAAACCTTATTTCCGTTATAGACAGAGAAACTCGAGTTTGAATTTGTTTAAAAAAATAAAATGTTTCAAAATGAAGATGAAATTTTTCAATTTGGTGGACTTTCAATTTTTGAGTAAAATGAAGACTCACCCCATTCCTATCATCAATCGTTACACTGAAATCGTCCTTCATACAAATGAATGTGAAATTTATGATTATATAATTCGAGCATACAGAAACCAAGCACAAAAAACTCATGAGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTTCCAC</canonical>
            <polymorphic>AGAGGTACCTGGCTCCATATCTAACATAGAGAAAATTAATGGGAAACGTTCCGATCATGGTTCCAAACGCGACTGCCCATAAAATGTACTTCTTTTCAGTAGGACTGTAGTCATAGATGCTTTTGAGAGTCTGAAAATATTTTATTGTATTTTTAAAATTTATTTTTCCTTCAATTCATTAAAAAAAAACCTTATTTCCGTTATAGACAGAGAAACTCGAGTTTGAATTTGTTTAAAAAAATAAAATGTTTCAAAATGAAGATGAAATTTTTCAATTTGGTGGACTTTCAATTTTTGAGTAAAATGAAGACTCACCCCATTCCTATCATCAATCGTTACACTGAAATCGTCCTTCATACAAATGAATGTGAAATTTATGATTATATAATTCGAGCATACAGAAACCAAGCACAAAAAACTCATGAGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGMATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTTCCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCACTATGATGATTCGAAAATA</pcr_primer_p1>
		<pcr_primer_p2>TTTGACCTAATTCATTGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAA</canonical_amplicon>
		<polymorphic_amplicon>AGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGMATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9603</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>686517</contig_pos>
        <strand>+</strand>
        <context>ACAAGGGTAA[A/C]CACTGAGTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAA</left_flank>
        <right_flank>CACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCGATCATGGTTCCAAACGCGACTGCCCATAAAATGTACTTCTTTTCAGTAGGACTGTAGTCATAGATGCTTTTGAGAGTCTGAAAATATTTTATTGTATTTTTAAAATTTATTTTTCCTTCAATTCATTAAAAAAAAACCTTATTTCCGTTATAGACAGAGAAACTCGAGTTTGAATTTGTTTAAAAAAATAAAATGTTTCAAAATGAAGATGAAATTTTTCAATTTGGTGGACTTTCAATTTTTGAGTAAAATGAAGACTCACCCCATTCCTATCATCAATCGTTACACTGAAATCGTCCTTCATACAAATGAATGTGAAATTTATGATTATATAATTCGAGCATACAGAAACCAAGCACAAAAAACTCATGAGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTTCCACTTGTTTAACTAATATTGCTGTCTCACAACGAAAACTACTGTAATCGGAA</canonical>
            <polymorphic>TCCGATCATGGTTCCAAACGCGACTGCCCATAAAATGTACTTCTTTTCAGTAGGACTGTAGTCATAGATGCTTTTGAGAGTCTGAAAATATTTTATTGTATTTTTAAAATTTATTTTTCCTTCAATTCATTAAAAAAAAACCTTATTTCCGTTATAGACAGAGAAACTCGAGTTTGAATTTGTTTAAAAAAATAAAATGTTTCAAAATGAAGATGAAATTTTTCAATTTGGTGGACTTTCAATTTTTGAGTAAAATGAAGACTCACCCCATTCCTATCATCAATCGTTACACTGAAATCGTCCTTCATACAAATGAATGTGAAATTTATGATTATATAATTCGAGCATACAGAAACCAAGCACAAAAAACTCATGAGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAAMCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTTCCACTTGTTTAACTAATATTGCTGTCTCACAACGAAAACTACTGTAATCGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGTNACC</site>
                <isoschizomers>
                    <enzyme>BstEII</enzyme>
                    <enzyme>BstPI</enzyme>
                    <enzyme>Eco91I</enzyme>
                    <enzyme>EcoO65I</enzyme>
                    <enzyme>PspEI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>411 285 210 94</canonical_bands>
                <polymorphic_bands>411 304 285</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCACTATGATGATTCGAAAATA</pcr_primer_p1>
		<pcr_primer_p2>TTTGACCTAATTCATTGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAA</canonical_amplicon>
		<polymorphic_amplicon>AGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAAMCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9604</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>686591</contig_pos>
        <strand>+</strand>
        <context>ATAAATCACC[A/G]AWGTCTATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACC</left_flank>
        <right_flank>ATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGAGTCTGAAAATATTTTATTGTATTTTTAAAATTTATTTTTCCTTCAATTCATTAAAAAAAAACCTTATTTCCGTTATAGACAGAGAAACTCGAGTTTGAATTTGTTTAAAAAAATAAAATGTTTCAAAATGAAGATGAAATTTTTCAATTTGGTGGACTTTCAATTTTTGAGTAAAATGAAGACTCACCCCATTCCTATCATCAATCGTTACACTGAAATCGTCCTTCATACAAATGAATGTGAAATTTATGATTATATAATTCGAGCATACAGAAACCAAGCACAAAAAACTCATGAGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTTCCACTTGTTTAACTAATATTGCTGTCTCACAACGAAAACTACTGTAATCGGAAAATAACATTGTTTCCCGGTTTTTTTCTTGATTTTTTTCAATCCCCATGTTGATTCTTTTCCATTTAAAAAATTT</canonical>
            <polymorphic>TGAGAGTCTGAAAATATTTTATTGTATTTTTAAAATTTATTTTTCCTTCAATTCATTAAAAAAAAACCTTATTTCCGTTATAGACAGAGAAACTCGAGTTTGAATTTGTTTAAAAAAATAAAATGTTTCAAAATGAAGATGAAATTTTTCAATTTGGTGGACTTTCAATTTTTGAGTAAAATGAAGACTCACCCCATTCCTATCATCAATCGTTACACTGAAATCGTCCTTCATACAAATGAATGTGAAATTTATGATTATATAATTCGAGCATACAGAAACCAAGCACAAAAAACTCATGAGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCRATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTTCCACTTGTTTAACTAATATTGCTGTCTCACAACGAAAACTACTGTAATCGGAAAATAACATTGTTTCCCGGTTTTTTTCTTGATTTTTTTCAATCCCCATGTTGATTCTTTTCCATTTAAAAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTAAGCATTTTCCAATTTT</pcr_primer_p1>
		<pcr_primer_p2>CGAATTCGTTTTCTGTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCRATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9605</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>686593</contig_pos>
        <strand>+</strand>
        <context>AAATCACCRA[A/T]GTCTATTTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGA</left_flank>
        <right_flank>GTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGTCTGAAAATATTTTATTGTATTTTTAAAATTTATTTTTCCTTCAATTCATTAAAAAAAAACCTTATTTCCGTTATAGACAGAGAAACTCGAGTTTGAATTTGTTTAAAAAAATAAAATGTTTCAAAATGAAGATGAAATTTTTCAATTTGGTGGACTTTCAATTTTTGAGTAAAATGAAGACTCACCCCATTCCTATCATCAATCGTTACACTGAAATCGTCCTTCATACAAATGAATGTGAAATTTATGATTATATAATTCGAGCATACAGAAACCAAGCACAAAAAACTCATGAGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTTCCACTTGTTTAACTAATATTGCTGTCTCACAACGAAAACTACTGTAATCGGAAAATAACATTGTTTCCCGGTTTTTTTCTTGATTTTTTTCAATCCCCATGTTGATTCTTTTCCATTTAAAAAATTTTT</canonical>
            <polymorphic>AGAGTCTGAAAATATTTTATTGTATTTTTAAAATTTATTTTTCCTTCAATTCATTAAAAAAAAACCTTATTTCCGTTATAGACAGAGAAACTCGAGTTTGAATTTGTTTAAAAAAATAAAATGTTTCAAAATGAAGATGAAATTTTTCAATTTGGTGGACTTTCAATTTTTGAGTAAAATGAAGACTCACCCCATTCCTATCATCAATCGTTACACTGAAATCGTCCTTCATACAAATGAATGTGAAATTTATGATTATATAATTCGAGCATACAGAAACCAAGCACAAAAAACTCATGAGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGAWGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTTCCACTTGTTTAACTAATATTGCTGTCTCACAACGAAAACTACTGTAATCGGAAAATAACATTGTTTCCCGGTTTTTTTCTTGATTTTTTTCAATCCCCATGTTGATTCTTTTCCATTTAAAAAATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTAAGCATTTTCCAATTTT</pcr_primer_p1>
		<pcr_primer_p2>CGAATTCGTTTTCTGTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGAWGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9606</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>686609</contig_pos>
        <strand>+</strand>
        <context>TTTAAAAAGT[C/T]ACATTWATTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGT</left_flank>
        <right_flank>ACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATTGTATTTTTAAAATTTATTTTTCCTTCAATTCATTAAAAAAAAACCTTATTTCCGTTATAGACAGAGAAACTCGAGTTTGAATTTGTTTAAAAAAATAAAATGTTTCAAAATGAAGATGAAATTTTTCAATTTGGTGGACTTTCAATTTTTGAGTAAAATGAAGACTCACCCCATTCCTATCATCAATCGTTACACTGAAATCGTCCTTCATACAAATGAATGTGAAATTTATGATTATATAATTCGAGCATACAGAAACCAAGCACAAAAAACTCATGAGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTTCCACTTGTTTAACTAATATTGCTGTCTCACAACGAAAACTACTGTAATCGGAAAATAACATTGTTTCCCGGTTTTTTTCTTGATTTTTTTCAATCCCCATGTTGATTCTTTTCCATTTAAAAAATTTTTTATTCAGGAATAAATA</canonical>
            <polymorphic>TTATTGTATTTTTAAAATTTATTTTTCCTTCAATTCATTAAAAAAAAACCTTATTTCCGTTATAGACAGAGAAACTCGAGTTTGAATTTGTTTAAAAAAATAAAATGTTTCAAAATGAAGATGAAATTTTTCAATTTGGTGGACTTTCAATTTTTGAGTAAAATGAAGACTCACCCCATTCCTATCATCAATCGTTACACTGAAATCGTCCTTCATACAAATGAATGTGAAATTTATGATTATATAATTCGAGCATACAGAAACCAAGCACAAAAAACTCATGAGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTYACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTTCCACTTGTTTAACTAATATTGCTGTCTCACAACGAAAACTACTGTAATCGGAAAATAACATTGTTTCCCGGTTTTTTTCTTGATTTTTTTCAATCCCCATGTTGATTCTTTTCCATTTAAAAAATTTTTTATTCAGGAATAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTAAGCATTTTCCAATTTT</pcr_primer_p1>
		<pcr_primer_p2>CGAATTCGTTTTCTGTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTYACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9607</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>686615</contig_pos>
        <strand>+</strand>
        <context>AAGTYACATT[A/T]ATTAATAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATT</left_flank>
        <right_flank>ATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTTTAAAATTTATTTTTCCTTCAATTCATTAAAAAAAAACCTTATTTCCGTTATAGACAGAGAAACTCGAGTTTGAATTTGTTTAAAAAAATAAAATGTTTCAAAATGAAGATGAAATTTTTCAATTTGGTGGACTTTCAATTTTTGAGTAAAATGAAGACTCACCCCATTCCTATCATCAATCGTTACACTGAAATCGTCCTTCATACAAATGAATGTGAAATTTATGATTATATAATTCGAGCATACAGAAACCAAGCACAAAAAACTCATGAGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTTCCACTTGTTTAACTAATATTGCTGTCTCACAACGAAAACTACTGTAATCGGAAAATAACATTGTTTCCCGGTTTTTTTCTTGATTTTTTTCAATCCCCATGTTGATTCTTTTCCATTTAAAAAATTTTTTATTCAGGAATAAATAACAGAA</canonical>
            <polymorphic>TATTTTTAAAATTTATTTTTCCTTCAATTCATTAAAAAAAAACCTTATTTCCGTTATAGACAGAGAAACTCGAGTTTGAATTTGTTTAAAAAAATAAAATGTTTCAAAATGAAGATGAAATTTTTCAATTTGGTGGACTTTCAATTTTTGAGTAAAATGAAGACTCACCCCATTCCTATCATCAATCGTTACACTGAAATCGTCCTTCATACAAATGAATGTGAAATTTATGATTATATAATTCGAGCATACAGAAACCAAGCACAAAAAACTCATGAGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTWATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTTCCACTTGTTTAACTAATATTGCTGTCTCACAACGAAAACTACTGTAATCGGAAAATAACATTGTTTCCCGGTTTTTTTCTTGATTTTTTTCAATCCCCATGTTGATTCTTTTCCATTTAAAAAATTTTTTATTCAGGAATAAATAACAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTAAGCATTTTCCAATTTT</pcr_primer_p1>
		<pcr_primer_p2>CGAATTCGTTTTCTGTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTWATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9608</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>686646</contig_pos>
        <strand>+</strand>
        <context>TAGGTCAAAA[A/G]TCTGTAGAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAA</left_flank>
        <right_flank>TCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAAAAAAACCTTATTTCCGTTATAGACAGAGAAACTCGAGTTTGAATTTGTTTAAAAAAATAAAATGTTTCAAAATGAAGATGAAATTTTTCAATTTGGTGGACTTTCAATTTTTGAGTAAAATGAAGACTCACCCCATTCCTATCATCAATCGTTACACTGAAATCGTCCTTCATACAAATGAATGTGAAATTTATGATTATATAATTCGAGCATACAGAAACCAAGCACAAAAAACTCATGAGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTTCCACTTGTTTAACTAATATTGCTGTCTCACAACGAAAACTACTGTAATCGGAAAATAACATTGTTTCCCGGTTTTTTTCTTGATTTTTTTCAATCCCCATGTTGATTCTTTTCCATTTAAAAAATTTTTTATTCAGGAATAAATAACAGAAGCATAATATGAACTGAAAATTGAAATGAAAT</canonical>
            <polymorphic>TTAAAAAAAAACCTTATTTCCGTTATAGACAGAGAAACTCGAGTTTGAATTTGTTTAAAAAAATAAAATGTTTCAAAATGAAGATGAAATTTTTCAATTTGGTGGACTTTCAATTTTTGAGTAAAATGAAGACTCACCCCATTCCTATCATCAATCGTTACACTGAAATCGTCCTTCATACAAATGAATGTGAAATTTATGATTATATAATTCGAGCATACAGAAACCAAGCACAAAAAACTCATGAGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAARTCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTTCCACTTGTTTAACTAATATTGCTGTCTCACAACGAAAACTACTGTAATCGGAAAATAACATTGTTTCCCGGTTTTTTTCTTGATTTTTTTCAATCCCCATGTTGATTCTTTTCCATTTAAAAAATTTTTTATTCAGGAATAAATAACAGAAGCATAATATGAACTGAAAATTGAAATGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTAAGCATTTTCCAATTTT</pcr_primer_p1>
		<pcr_primer_p2>CGAATTCGTTTTCTGTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAARTCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9609</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>686680</contig_pos>
        <strand>+</strand>
        <context>AAACAAGTTT[C/T]CTTTTGTATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTT</left_flank>
        <right_flank>CTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTCGAGTTTGAATTTGTTTAAAAAAATAAAATGTTTCAAAATGAAGATGAAATTTTTCAATTTGGTGGACTTTCAATTTTTGAGTAAAATGAAGACTCACCCCATTCCTATCATCAATCGTTACACTGAAATCGTCCTTCATACAAATGAATGTGAAATTTATGATTATATAATTCGAGCATACAGAAACCAAGCACAAAAAACTCATGAGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTTCCACTTGTTTAACTAATATTGCTGTCTCACAACGAAAACTACTGTAATCGGAAAATAACATTGTTTCCCGGTTTTTTTCTTGATTTTTTTCAATCCCCATGTTGATTCTTTTCCATTTAAAAAATTTTTTATTCAGGAATAAATAACAGAAGCATAATATGAACTGAAAATTGAAATGAAATTCTGAAAATAAAAGTAATTTCAGGTTACGGTAGT</canonical>
            <polymorphic>AAACTCGAGTTTGAATTTGTTTAAAAAAATAAAATGTTTCAAAATGAAGATGAAATTTTTCAATTTGGTGGACTTTCAATTTTTGAGTAAAATGAAGACTCACCCCATTCCTATCATCAATCGTTACACTGAAATCGTCCTTCATACAAATGAATGTGAAATTTATGATTATATAATTCGAGCATACAGAAACCAAGCACAAAAAACTCATGAGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTYCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTTCCACTTGTTTAACTAATATTGCTGTCTCACAACGAAAACTACTGTAATCGGAAAATAACATTGTTTCCCGGTTTTTTTCTTGATTTTTTTCAATCCCCATGTTGATTCTTTTCCATTTAAAAAATTTTTTATTCAGGAATAAATAACAGAAGCATAATATGAACTGAAAATTGAAATGAAATTCTGAAAATAAAAGTAATTTCAGGTTACGGTAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCAATGAATTAGGTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAACTCTTCCATTCAACTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>AAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTYCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9610</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>686768</contig_pos>
        <strand></strand>
        <context>TACTTCTTTG[G/A]AAAGAACAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTG</left_flank>
        <right_flank>AAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATGAAGACTCACCCCATTCCTATCATCAATCGTTACACTGAAATCGTCCTTCATACAAATGAATGTGAAATTTATGATTATATAATTCGAGCATACAGAAACCAAGCACAAAAAACTCATGAGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTTCCACTTGTTTAACTAATATTGCTGTCTCACAACGAAAACTACTGTAATCGGAAAATAACATTGTTTCCCGGTTTTTTTCTTGATTTTTTTCAATCCCCATGTTGATTCTTTTCCATTTAAAAAATTTTTTATTCAGGAATAAATAACAGAAGCATAATATGAACTGAAAATTGAAATGAAATTCTGAAAATAAAAGTAATTTCAGGTTACGGTAGTTTTCTAGTTTTTCTCTTCCACAGCGCTTCAAGTTTATCGTCCGTCACTGTTCAATCCAGAGCTCTGAATTTTACAGACTAGAAGATAA</canonical>
            <polymorphic>AAAATGAAGACTCACCCCATTCCTATCATCAATCGTTACACTGAAATCGTCCTTCATACAAATGAATGTGAAATTTATGATTATATAATTCGAGCATACAGAAACCAAGCACAAAAAACTCATGAGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGRAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTTCCACTTGTTTAACTAATATTGCTGTCTCACAACGAAAACTACTGTAATCGGAAAATAACATTGTTTCCCGGTTTTTTTCTTGATTTTTTTCAATCCCCATGTTGATTCTTTTCCATTTAAAAAATTTTTTATTCAGGAATAAATAACAGAAGCATAATATGAACTGAAAATTGAAATGAAATTCTGAAAATAAAAGTAATTTCAGGTTACGGTAGTTTTCTAGTTTTTCTCTTCCACAGCGCTTCAAGTTTATCGTCCGTCACTGTTCAATCCAGAGCTCTGAATTTTACAGACTAGAAGATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCAATGAATTAGGTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAACTCTTCCATTCAACTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>AAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGRAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9611</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>686797</contig_pos>
        <strand>+</strand>
        <context>TCGGACGATA[A/C]AAAATTTCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATA</left_flank>
        <right_flank>AAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATCGTTACACTGAAATCGTCCTTCATACAAATGAATGTGAAATTTATGATTATATAATTCGAGCATACAGAAACCAAGCACAAAAAACTCATGAGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTTCCACTTGTTTAACTAATATTGCTGTCTCACAACGAAAACTACTGTAATCGGAAAATAACATTGTTTCCCGGTTTTTTTCTTGATTTTTTTCAATCCCCATGTTGATTCTTTTCCATTTAAAAAATTTTTTATTCAGGAATAAATAACAGAAGCATAATATGAACTGAAAATTGAAATGAAATTCTGAAAATAAAAGTAATTTCAGGTTACGGTAGTTTTCTAGTTTTTCTCTTCCACAGCGCTTCAAGTTTATCGTCCGTCACTGTTCAATCCAGAGCTCTGAATTTTACAGACTAGAAGATAATTTTGACTCTGTAAAACATGAAAACAATG</canonical>
            <polymorphic>CAATCGTTACACTGAAATCGTCCTTCATACAAATGAATGTGAAATTTATGATTATATAATTCGAGCATACAGAAACCAAGCACAAAAAACTCATGAGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAMAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTTCCACTTGTTTAACTAATATTGCTGTCTCACAACGAAAACTACTGTAATCGGAAAATAACATTGTTTCCCGGTTTTTTTCTTGATTTTTTTCAATCCCCATGTTGATTCTTTTCCATTTAAAAAATTTTTTATTCAGGAATAAATAACAGAAGCATAATATGAACTGAAAATTGAAATGAAATTCTGAAAATAAAAGTAATTTCAGGTTACGGTAGTTTTCTAGTTTTTCTCTTCCACAGCGCTTCAAGTTTATCGTCCGTCACTGTTCAATCCAGAGCTCTGAATTTTACAGACTAGAAGATAATTTTGACTCTGTAAAACATGAAAACAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATGGTGGTGGTACATCTC</pcr_primer_p1>
		<pcr_primer_p2>CAAGTGGAACAGCAATATTAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTTCCACTTG</canonical_amplicon>
		<polymorphic_amplicon>ACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAMAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTTCCACTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9612</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>686850</contig_pos>
        <strand>+</strand>
        <context>TTTGTTTCAT[A/G]AGACYGAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCAT</left_flank>
        <right_flank>AGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATAATTCGAGCATACAGAAACCAAGCACAAAAAACTCATGAGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTTCCACTTGTTTAACTAATATTGCTGTCTCACAACGAAAACTACTGTAATCGGAAAATAACATTGTTTCCCGGTTTTTTTCTTGATTTTTTTCAATCCCCATGTTGATTCTTTTCCATTTAAAAAATTTTTTATTCAGGAATAAATAACAGAAGCATAATATGAACTGAAAATTGAAATGAAATTCTGAAAATAAAAGTAATTTCAGGTTACGGTAGTTTTCTAGTTTTTCTCTTCCACAGCGCTTCAAGTTTATCGTCCGTCACTGTTCAATCCAGAGCTCTGAATTTTACAGACTAGAAGATAATTTTGACTCTGTAAAACATGAAAACAATGTTTGTGTGAATAATTCCGACTTTAACATTTTTCAATTGGTTTTTTTTTTGAAT</canonical>
            <polymorphic>ATATAATTCGAGCATACAGAAACCAAGCACAAAAAACTCATGAGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATRAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTTCCACTTGTTTAACTAATATTGCTGTCTCACAACGAAAACTACTGTAATCGGAAAATAACATTGTTTCCCGGTTTTTTTCTTGATTTTTTTCAATCCCCATGTTGATTCTTTTCCATTTAAAAAATTTTTTATTCAGGAATAAATAACAGAAGCATAATATGAACTGAAAATTGAAATGAAATTCTGAAAATAAAAGTAATTTCAGGTTACGGTAGTTTTCTAGTTTTTCTCTTCCACAGCGCTTCAAGTTTATCGTCCGTCACTGTTCAATCCAGAGCTCTGAATTTTACAGACTAGAAGATAATTTTGACTCTGTAAAACATGAAAACAATGTTTGTGTGAATAATTCCGACTTTAACATTTTTCAATTGGTTTTTTTTTTGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>504 458 38</canonical_bands>
                <polymorphic_bands>962 38</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>334 223 215 124 65 39</canonical_bands>
                <polymorphic_bands>339 334 223 65 39</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>458 138 123 114 73 55 39</canonical_bands>
                <polymorphic_bands>531 138 123 114 55 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATGGTGGTGGTACATCTC</pcr_primer_p1>
		<pcr_primer_p2>CAAGTGGAACAGCAATATTAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTTCCACTTG</canonical_amplicon>
		<polymorphic_amplicon>ACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATRAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTTCCACTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9614</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>25401</contig_pos>
        <strand></strand>
        <context>TCTGAGCGGC[T/A]GCCCGATTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GAATTTTTAATTTGAAAATCCAAAAAGGCCTTTTCGTATTTCTGAGCGGC</left_flank>
        <right_flank>GCCCGATTTATTCAAAACATCAGATTTGAGTACATCAAGAAAAAGTTGCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGATACCGGCAGCAGAGATAGTAGAACAAAATTTGGAATTAAGAAAGTTCCGAAGTTTTAAAAAAAATGAACTGACTTTTTTATCGAAAAATATGCGGAATTCCTCCAGAGTTGTTTTTTTTTGAAATCAAATTCCGATCGGAACATTTCCAAGATTTTTTCGAAAATGACAGATTTTTGCACTACAGTTTTTTAGATTTTTGAATTTTTTGAAAAGAAAATTAGCGTTTTTCTAATAGGAAAAAAAAGAAAAATTTTCATTTTGATACTTGAATGTTTAAAAAATCCCGGAAATCCTTAAATTCCCAAATTTTGGAAATTGGACTGTTCCGAAGATTTCGAAAACAAAAAAGTTTTGGAAATAAGAATATCCCGGATATCTGAAAATCCGAAACTATAAAAATCGGTATATTCTAAAATCTCTAATTTCCAATTTTTTCAGAATCTGAATTTTTAATTTGAAAATCCAAAAAGGCCTTTTCGTATTTCTGAGCGGCTGCCCGATTTATTCAAAACATCAGATTTGAGTACATCAAGAAAAAGTTGCTCAATTCAAAGGATCTTCCGTCAGTCTGAAAACTGATGCGGAAAGCTTGGAGATCTTACAAGGGAACCACAACACCTCGTCAGTTTGGATTTTGATGAAATGTTCAGTATATGTCAAGGATATCCTATCTAGGCATCCCTGAAAATTTTAGAACACGCTCGCCACTTTCAGCCGAGTTATATCAGTTTCTGTACCAAAAATCGCGTTTTCAGTGCAAAAATAGCGATTTTCAAAGGCGATTTTCTCCGCTCCCAGGAGGTTCCAGAACATGAAACTTGATTTGCTACACTCAGAATTATGTGTGATATCATTATTCAGACATTTTCTGAAAAAAAAATTTTCGAAAAAATTTTTTCTACCATTTGGGTGGGTGATATTATCGAGCTTTTGTCAATTTGGAAAATCCTTAAAAAAGTAGTGATAATTGTTTGCAAATATTATTTTACAACTG</canonical>
            <polymorphic>AAAGATACCGGCAGCAGAGATAGTAGAACAAAATTTGGAATTAAGAAAGTTCCGAAGTTTTAAAAAAAATGAACTGACTTTTTTATCGAAAAATATGCGGAATTCCTCCAGAGTTGTTTTTTTTTGAAATCAAATTCCGATCGGAACATTTCCAAGATTTTTTCGAAAATGACAGATTTTTGCACTACAGTTTTTTAGATTTTTGAATTTTTTGAAAAGAAAATTAGCGTTTTTCTAATAGGAAAAAAAAGAAAAATTTTCATTTTGATACTTGAATGTTTAAAAAATCCCGGAAATCCTTAAATTCCCAAATTTTGGAAATTGGACTGTTCCGAAGATTTCGAAAACAAAAAAGTTTTGGAAATAAGAATATCCCGGATATCTGAAAATCCGAAACTATAAAAATCGGTATATTCTAAAATCTCTAATTTCCAATTTTTTCAGAATCTGAATTTTTAATTTGAAAATCCAAAAAGGCCTTTTCGTATTTCTGAGCGGCWGCCCGATTTATTCAAAACATCAGATTTGAGTACATCAAGAAAAAGTTGCTCAATTCAAAGGATCTTCCGTCAGTCTGAAAACTGATGCGGAAAGCTTGGAGATCTTACAAGGGAACCACAACACCTCGTCAGTTTGGATTTTGATGAAATGTTCAGTATATGTCAAGGATATCCTATCTAGGCATCCCTGAAAATTTTAGAACACGCTCGCCACTTTCAGCCGAGTTATATCAGTTTCTGTACCAAAAATCGCGTTTTCAGTGCAAAAATAGCGATTTTCAAAGGCGATTTTCTCCGCTCCCAGGAGGTTCCAGAACATGAAACTTGATTTGCTACACTCAGAATTATGTGTGATATCATTATTCAGACATTTTCTGAAAAAAAAATTTTCGAAAAAATTTTTTCTACCATTTGGGTGGGTGATATTATCGAGCTTTTGTCAATTTGGAAAATCCTTAAAAAAGTAGTGATAATTGTTTGCAAATATTATTTTACAACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>477 213 126 96 67 21</canonical_bands>
                <polymorphic_bands>477 213 126 117 67</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>502 487 11</canonical_bands>
                <polymorphic_bands>989 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAAAATTTGGAATTAAGAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GAATTGAGCAACTTTTTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>530</pcr_amplicon_size>
		<canonical_amplicon>AACAAAATTTGGAATTAAGAAAGTTCCGAAGTTTTAAAAAAAATGAACTGACTTTTTTATCGAAAAATATGCGGAATTCCTCCAGAGTTGTTTTTTTTTGAAATCAAATTCCGATCGGAACATTTCCAAGATTTTTTCGAAAATGACAGATTTTTGCACTACAGTTTTTTAGATTTTTGAATTTTTTGAAAAGAAAATTAGCGTTTTTCTAATAGGAAAAAAAAGAAAAATTTTCATTTTGATACTTGAATGTTTAAAAAATCCCGGAAATCCTTAAATTCCCAAATTTTGGAAATTGGACTGTTCCGAAGATTTCGAAAACAAAAAAGTTTTGGAAATAAGAATATCCCGGATATCTGAAAATCCGAAACTATAAAAATCGGTATATTCTAAAATCTCTAATTTCCAATTTTTTCAGAATCTGAATTTTTAATTTGAAAATCCAAAAAGGCCTTTTCGTATTTCTGAGCGGCTGCCCGATTTATTCAAAACATCAGATTTGAGTACATCAAGAAAAAGTTGCTCAATTC</canonical_amplicon>
		<polymorphic_amplicon>AACAAAATTTGGAATTAAGAAAGTTCCGAAGTTTTAAAAAAAATGAACTGACTTTTTTATCGAAAAATATGCGGAATTCCTCCAGAGTTGTTTTTTTTTGAAATCAAATTCCGATCGGAACATTTCCAAGATTTTTTCGAAAATGACAGATTTTTGCACTACAGTTTTTTAGATTTTTGAATTTTTTGAAAAGAAAATTAGCGTTTTTCTAATAGGAAAAAAAAGAAAAATTTTCATTTTGATACTTGAATGTTTAAAAAATCCCGGAAATCCTTAAATTCCCAAATTTTGGAAATTGGACTGTTCCGAAGATTTCGAAAACAAAAAAGTTTTGGAAATAAGAATATCCCGGATATCTGAAAATCCGAAACTATAAAAATCGGTATATTCTAAAATCTCTAATTTCCAATTTTTTCAGAATCTGAATTTTTAATTTGAAAATCCAAAAAGGCCTTTTCGTATTTCTGAGCGGCWGCCCGATTTATTCAAAACATCAGATTTGAGTACATCAAGAAAAAGTTGCTCAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9615</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>25431</contig_pos>
        <strand></strand>
        <context>TCAGATTTGA[G/T]TACATCAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTCGTATTTCTGAGCGGCTGCCCGATTTATTCAAAACATCAGATTTGA</left_flank>
        <right_flank>TACATCAAGAAAAAGTTGCTCAATTCAAAGGATCTTCCGTCAGTCTGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTGGAATTAAGAAAGTTCCGAAGTTTTAAAAAAAATGAACTGACTTTTTTATCGAAAAATATGCGGAATTCCTCCAGAGTTGTTTTTTTTTGAAATCAAATTCCGATCGGAACATTTCCAAGATTTTTTCGAAAATGACAGATTTTTGCACTACAGTTTTTTAGATTTTTGAATTTTTTGAAAAGAAAATTAGCGTTTTTCTAATAGGAAAAAAAAGAAAAATTTTCATTTTGATACTTGAATGTTTAAAAAATCCCGGAAATCCTTAAATTCCCAAATTTTGGAAATTGGACTGTTCCGAAGATTTCGAAAACAAAAAAGTTTTGGAAATAAGAATATCCCGGATATCTGAAAATCCGAAACTATAAAAATCGGTATATTCTAAAATCTCTAATTTCCAATTTTTTCAGAATCTGAATTTTTAATTTGAAAATCCAAAAAGGCCTTTTCGTATTTCTGAGCGGCTGCCCGATTTATTCAAAACATCAGATTTGAGTACATCAAGAAAAAGTTGCTCAATTCAAAGGATCTTCCGTCAGTCTGAAAACTGATGCGGAAAGCTTGGAGATCTTACAAGGGAACCACAACACCTCGTCAGTTTGGATTTTGATGAAATGTTCAGTATATGTCAAGGATATCCTATCTAGGCATCCCTGAAAATTTTAGAACACGCTCGCCACTTTCAGCCGAGTTATATCAGTTTCTGTACCAAAAATCGCGTTTTCAGTGCAAAAATAGCGATTTTCAAAGGCGATTTTCTCCGCTCCCAGGAGGTTCCAGAACATGAAACTTGATTTGCTACACTCAGAATTATGTGTGATATCATTATTCAGACATTTTCTGAAAAAAAAATTTTCGAAAAAATTTTTTCTACCATTTGGGTGGGTGATATTATCGAGCTTTTGTCAATTTGGAAAATCCTTAAAAAAGTAGTGATAATTGTTTGCAAATATTATTTTACAACTGATAGATAGTCTATTTTTGATTGCACGCTTT</canonical>
            <polymorphic>AAATTTGGAATTAAGAAAGTTCCGAAGTTTTAAAAAAAATGAACTGACTTTTTTATCGAAAAATATGCGGAATTCCTCCAGAGTTGTTTTTTTTTGAAATCAAATTCCGATCGGAACATTTCCAAGATTTTTTCGAAAATGACAGATTTTTGCACTACAGTTTTTTAGATTTTTGAATTTTTTGAAAAGAAAATTAGCGTTTTTCTAATAGGAAAAAAAAGAAAAATTTTCATTTTGATACTTGAATGTTTAAAAAATCCCGGAAATCCTTAAATTCCCAAATTTTGGAAATTGGACTGTTCCGAAGATTTCGAAAACAAAAAAGTTTTGGAAATAAGAATATCCCGGATATCTGAAAATCCGAAACTATAAAAATCGGTATATTCTAAAATCTCTAATTTCCAATTTTTTCAGAATCTGAATTTTTAATTTGAAAATCCAAAAAGGCCTTTTCGTATTTCTGAGCGGCTGCCCGATTTATTCAAAACATCAGATTTGAKTACATCAAGAAAAAGTTGCTCAATTCAAAGGATCTTCCGTCAGTCTGAAAACTGATGCGGAAAGCTTGGAGATCTTACAAGGGAACCACAACACCTCGTCAGTTTGGATTTTGATGAAATGTTCAGTATATGTCAAGGATATCCTATCTAGGCATCCCTGAAAATTTTAGAACACGCTCGCCACTTTCAGCCGAGTTATATCAGTTTCTGTACCAAAAATCGCGTTTTCAGTGCAAAAATAGCGATTTTCAAAGGCGATTTTCTCCGCTCCCAGGAGGTTCCAGAACATGAAACTTGATTTGCTACACTCAGAATTATGTGTGATATCATTATTCAGACATTTTCTGAAAAAAAAATTTTCGAAAAAATTTTTTCTACCATTTGGGTGGGTGATATTATCGAGCTTTTGTCAATTTGGAAAATCCTTAAAAAAGTAGTGATAATTGTTTGCAAATATTATTTTACAACTGATAGATAGTCTATTTTTGATTGCACGCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 289 210</canonical_bands>
                <polymorphic_bands>711 289</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACAAAATTTGGAATTAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>GGTTCCCTTGTAAGATCTCC</pcr_primer_p2>
		<pcr_amplicon_size>592</pcr_amplicon_size>
		<canonical_amplicon>AGTACATCAAGAAAAAGTTGCTCAATTCAAAGGATCTTCCGTCAGTCTGAAAACTGATGCGGAAAGCTTGGAGATCTTACAAGGGAACC</canonical_amplicon>
		<polymorphic_amplicon>AKTACATCAAGAAAAAGTTGCTCAATTCAAAGGATCTTCCGTCAGTCTGAAAACTGATGCGGAAAGCTTGGAGATCTTACAAGGGAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9616</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>25465</contig_pos>
        <strand></strand>
        <context>TTCAAAGGAT[C/T]TTCCGTCAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAACATCAGATTTGAGTACATCAAGAAAAAGTTGCTCAATTCAAAGGAT</left_flank>
        <right_flank>TTCCGTCAGTCTGAAAACTGATGCGGAAAGCTTGGAGATCTTACAAGGGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATGAACTGACTTTTTTATCGAAAAATATGCGGAATTCCTCCAGAGTTGTTTTTTTTTGAAATCAAATTCCGATCGGAACATTTCCAAGATTTTTTCGAAAATGACAGATTTTTGCACTACAGTTTTTTAGATTTTTGAATTTTTTGAAAAGAAAATTAGCGTTTTTCTAATAGGAAAAAAAAGAAAAATTTTCATTTTGATACTTGAATGTTTAAAAAATCCCGGAAATCCTTAAATTCCCAAATTTTGGAAATTGGACTGTTCCGAAGATTTCGAAAACAAAAAAGTTTTGGAAATAAGAATATCCCGGATATCTGAAAATCCGAAACTATAAAAATCGGTATATTCTAAAATCTCTAATTTCCAATTTTTTCAGAATCTGAATTTTTAATTTGAAAATCCAAAAAGGCCTTTTCGTATTTCTGAGCGGCTGCCCGATTTATTCAAAACATCAGATTTGAGTACATCAAGAAAAAGTTGCTCAATTCAAAGGATCTTCCGTCAGTCTGAAAACTGATGCGGAAAGCTTGGAGATCTTACAAGGGAACCACAACACCTCGTCAGTTTGGATTTTGATGAAATGTTCAGTATATGTCAAGGATATCCTATCTAGGCATCCCTGAAAATTTTAGAACACGCTCGCCACTTTCAGCCGAGTTATATCAGTTTCTGTACCAAAAATCGCGTTTTCAGTGCAAAAATAGCGATTTTCAAAGGCGATTTTCTCCGCTCCCAGGAGGTTCCAGAACATGAAACTTGATTTGCTACACTCAGAATTATGTGTGATATCATTATTCAGACATTTTCTGAAAAAAAAATTTTCGAAAAAATTTTTTCTACCATTTGGGTGGGTGATATTATCGAGCTTTTGTCAATTTGGAAAATCCTTAAAAAAGTAGTGATAATTGTTTGCAAATATTATTTTACAACTGATAGATAGTCTATTTTTGATTGCACGCTTTTCATTATTCATTCATGGTCCGTATAGGTCCAAAA</canonical>
            <polymorphic>AAAAATGAACTGACTTTTTTATCGAAAAATATGCGGAATTCCTCCAGAGTTGTTTTTTTTTGAAATCAAATTCCGATCGGAACATTTCCAAGATTTTTTCGAAAATGACAGATTTTTGCACTACAGTTTTTTAGATTTTTGAATTTTTTGAAAAGAAAATTAGCGTTTTTCTAATAGGAAAAAAAAGAAAAATTTTCATTTTGATACTTGAATGTTTAAAAAATCCCGGAAATCCTTAAATTCCCAAATTTTGGAAATTGGACTGTTCCGAAGATTTCGAAAACAAAAAAGTTTTGGAAATAAGAATATCCCGGATATCTGAAAATCCGAAACTATAAAAATCGGTATATTCTAAAATCTCTAATTTCCAATTTTTTCAGAATCTGAATTTTTAATTTGAAAATCCAAAAAGGCCTTTTCGTATTTCTGAGCGGCTGCCCGATTTATTCAAAACATCAGATTTGAGTACATCAAGAAAAAGTTGCTCAATTCAAAGGATYTTCCGTCAGTCTGAAAACTGATGCGGAAAGCTTGGAGATCTTACAAGGGAACCACAACACCTCGTCAGTTTGGATTTTGATGAAATGTTCAGTATATGTCAAGGATATCCTATCTAGGCATCCCTGAAAATTTTAGAACACGCTCGCCACTTTCAGCCGAGTTATATCAGTTTCTGTACCAAAAATCGCGTTTTCAGTGCAAAAATAGCGATTTTCAAAGGCGATTTTCTCCGCTCCCAGGAGGTTCCAGAACATGAAACTTGATTTGCTACACTCAGAATTATGTGTGATATCATTATTCAGACATTTTCTGAAAAAAAAATTTTCGAAAAAATTTTTTCTACCATTTGGGTGGGTGATATTATCGAGCTTTTGTCAATTTGGAAAATCCTTAAAAAAGTAGTGATAATTGTTTGCAAATATTATTTTACAACTGATAGATAGTCTATTTTTGATTGCACGCTTTTCATTATTCATTCATGGTCCGTATAGGTCCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>464 422 74 40</canonical_bands>
                <polymorphic_bands>464 462 74</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>496 464 40</canonical_bands>
                <polymorphic_bands>536 464</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATTTATTCAAAACATCAGATT</pcr_primer_p1>
		<pcr_primer_p2>TATAACTCGGCTGAAAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>CGATTTATTCAAAACATCAGATTTGAGTACATCAAGAAAAAGTTGCTCAATTCAAAGGATCTTCCGTCAGTCTGAAAACTGATGCGGAAAGCTTGGAGATCTTACAAGGGAACCACAACACCTCGTCAGTTTGGATTTTGATGAAATGTTCAGTATATGTCAAGGATATCCTATCTAGGCATCCCTGAAAATTTTAGAACACGCTCGCCACTTTCAGCCGAGTTATA</canonical_amplicon>
		<polymorphic_amplicon>CGATTTATTCAAAACATCAGATTTGAGTACATCAAGAAAAAGTTGCTCAATTCAAAGGATYTTCCGTCAGTCTGAAAACTGATGCGGAAAGCTTGGAGATCTTACAAGGGAACCACAACACCTCGTCAGTTTGGATTTTGATGAAATGTTCAGTATATGTCAAGGATATCCTATCTAGGCATCCCTGAAAATTTTAGAACACGCTCGCCACTTTCAGCCGAGTTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9617</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>28578</contig_pos>
        <strand>+</strand>
        <context>GGTGAAAAAA[A/G]TTAAAAGTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTAGCGATGAGAATAAATTTGTTAAAAGTGCAACCTCCGGGTGAAAAAA</left_flank>
        <right_flank>TTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATAAGTTCAAAAGTCTAGAACGCCTCTCGATCTTTGTCTTCTTCGTCAGTGTCTGTCTCTCTTCACACTTTCACTTATTTCTTCAGAAAAACATAACCTACAGTACCCACCCAAAATCAACAGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAAGAATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGATAAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTTGTTAAAAGTGCAACCTCCGGGTGAAAAAAATTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGTAGAATTTCAAAATAAGTCAACACTCAATTTTGAAAAAAAAACAAAAAAGTGGGTTAAAAGTTCCAGAGGTAGAGAAATCTTAAAGCTAAATCTAGATTTAGGTGATCGTGAAAAATGATAAAACACTGGGTGGTTTGAATTTTTAGTGGGCGGAATTTTTTCGAACGAGGTTTTTGGGGATATTGGATACAGCTAGAATTATCTTGCGAAGCTAATGAAAAATCAGATTTCCCAATAAAAATTGTCTTTGATTCCCATAAAAATTTGCTTCTTATTAATGGATGGCAGTACACAAAAAGAAACGTTGAAACCAGATAATCCGATTAATGAAGAAGCAATAAAATTGATATTGGGAGGTCTCTATCTTCTGTGGAGAAGTTATAATTGCCTATCCGATATCTATATCAATATCAGAGAATTCGTATCGAATATCTTATTCTAC</canonical>
            <polymorphic>CAATAAGTTCAAAAGTCTAGAACGCCTCTCGATCTTTGTCTTCTTCGTCAGTGTCTGTCTCTCTTCACACTTTCACTTATTTCTTCAGAAAAACATAACCTACAGTACCCACCCAAAATCAACAGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAAGAATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGATAAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTTGTTAAAAGTGCAACCTCCGGGTGAAAAAARTTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGTAGAATTTCAAAATAAGTCAACACTCAATTTTGAAAAAAAAACAAAAAAGTGGGTTAAAAGTTCCAGAGGTAGAGAAATCTTAAAGCTAAATCTAGATTTAGGTGATCGTGAAAAATGATAAAACACTGGGTGGTTTGAATTTTTAGTGGGCGGAATTTTTTCGAACGAGGTTTTTGGGGATATTGGATACAGCTAGAATTATCTTGCGAAGCTAATGAAAAATCAGATTTCCCAATAAAAATTGTCTTTGATTCCCATAAAAATTTGCTTCTTATTAATGGATGGCAGTACACAAAAAGAAACGTTGAAACCAGATAATCCGATTAATGAAGAAGCAATAAAATTGATATTGGGAGGTCTCTATCTTCTGTGGAGAAGTTATAATTGCCTATCCGATATCTATATCAATATCAGAGAATTCGTATCGAATATCTTATTCTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>145 125 115 112 80 70 62 43 43 41 34 33 26 23 22 16 10</canonical_bands>
                <polymorphic_bands>145 125 115 112 95 80 70 43 43 41 34 26 23 22 16 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTTTCTCTCCTATCCCATTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAAAATTGAGTGTTGACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTTGTTAAAAGTGCAACCTCCGGGTGAAAAAAATTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGTAGAATTTCAAAATAAGTCAACACTCAATTTTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTTGTTAAAAGTGCAACCTCCGGGTGAAAAAARTTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGTAGAATTTCAAAATAAGTCAACACTCAATTTTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9618</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>28558</contig_pos>
        <strand>+</strand>
        <context>TGTTAAAAGT[G/T]CAACCTCCGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTTGTTAAAAGT</left_flank>
        <right_flank>CAACCTCCGGGTGAAAAAAATTAAAAGTGCAAATGAAATATAAGAGGAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAACAAATCTGGTCCCTACAATAAGTTCAAAAGTCTAGAACGCCTCTCGATCTTTGTCTTCTTCGTCAGTGTCTGTCTCTCTTCACACTTTCACTTATTTCTTCAGAAAAACATAACCTACAGTACCCACCCAAAATCAACAGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAAGAATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGATAAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTTGTTAAAAGTGCAACCTCCGGGTGAAAAAAATTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGTAGAATTTCAAAATAAGTCAACACTCAATTTTGAAAAAAAAACAAAAAAGTGGGTTAAAAGTTCCAGAGGTAGAGAAATCTTAAAGCTAAATCTAGATTTAGGTGATCGTGAAAAATGATAAAACACTGGGTGGTTTGAATTTTTAGTGGGCGGAATTTTTTCGAACGAGGTTTTTGGGGATATTGGATACAGCTAGAATTATCTTGCGAAGCTAATGAAAAATCAGATTTCCCAATAAAAATTGTCTTTGATTCCCATAAAAATTTGCTTCTTATTAATGGATGGCAGTACACAAAAAGAAACGTTGAAACCAGATAATCCGATTAATGAAGAAGCAATAAAATTGATATTGGGAGGTCTCTATCTTCTGTGGAGAAGTTATAATTGCCTATCCGATATCTATATCAATATCAGAGAATTCG</canonical>
            <polymorphic>TTGAACAAATCTGGTCCCTACAATAAGTTCAAAAGTCTAGAACGCCTCTCGATCTTTGTCTTCTTCGTCAGTGTCTGTCTCTCTTCACACTTTCACTTATTTCTTCAGAAAAACATAACCTACAGTACCCACCCAAAATCAACAGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAAGAATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGATAAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTTGTTAAAAGTKCAACCTCCGGGTGAAAAAAATTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGTAGAATTTCAAAATAAGTCAACACTCAATTTTGAAAAAAAAACAAAAAAGTGGGTTAAAAGTTCCAGAGGTAGAGAAATCTTAAAGCTAAATCTAGATTTAGGTGATCGTGAAAAATGATAAAACACTGGGTGGTTTGAATTTTTAGTGGGCGGAATTTTTTCGAACGAGGTTTTTGGGGATATTGGATACAGCTAGAATTATCTTGCGAAGCTAATGAAAAATCAGATTTCCCAATAAAAATTGTCTTTGATTCCCATAAAAATTTGCTTCTTATTAATGGATGGCAGTACACAAAAAGAAACGTTGAAACCAGATAATCCGATTAATGAAGAAGCAATAAAATTGATATTGGGAGGTCTCTATCTTCTGTGGAGAAGTTATAATTGCCTATCCGATATCTATATCAATATCAGAGAATTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>471 450 50 29</canonical_bands>
                <polymorphic_bands>471 450 79</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>144 109 87 80 73 71 53 50 47 36 35 32 29 26 17 16 16 16 15 14 13 7 6 6 2</canonical_bands>
                <polymorphic_bands>144 109 87 80 73 71 53 50 47 45 36 35 29 26 17 16 16 16 15 14 7 6 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTTTCTCTCCTATCCCATTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAAAATTGAGTGTTGACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTTGTTAAAAGTGCAACCTCCGGGTGAAAAAAATTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGTAGAATTTCAAAATAAGTCAACACTCAATTTTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTTGTTAAAAGTKCAACCTCCGGGTGAAAAAAATTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGTAGAATTTCAAAATAAGTCAACACTCAATTTTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9619</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>28516</contig_pos>
        <strand>+</strand>
        <context>TTGCACTTCC[C/G]TAAATGTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCC</left_flank>
        <right_flank>TAAATGTTCACCTTAGCGATGAGAATAAATTTGTTAAAAGTGCAACCTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCGGGAAATCCGAAAGACTGGGGTTCCCAACTTCTCGATTTGAACAAATCTGGTCCCTACAATAAGTTCAAAAGTCTAGAACGCCTCTCGATCTTTGTCTTCTTCGTCAGTGTCTGTCTCTCTTCACACTTTCACTTATTTCTTCAGAAAAACATAACCTACAGTACCCACCCAAAATCAACAGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAAGAATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGATAAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTTGTTAAAAGTGCAACCTCCGGGTGAAAAAAATTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGTAGAATTTCAAAATAAGTCAACACTCAATTTTGAAAAAAAAACAAAAAAGTGGGTTAAAAGTTCCAGAGGTAGAGAAATCTTAAAGCTAAATCTAGATTTAGGTGATCGTGAAAAATGATAAAACACTGGGTGGTTTGAATTTTTAGTGGGCGGAATTTTTTCGAACGAGGTTTTTGGGGATATTGGATACAGCTAGAATTATCTTGCGAAGCTAATGAAAAATCAGATTTCCCAATAAAAATTGTCTTTGATTCCCATAAAAATTTGCTTCTTATTAATGGATGGCAGTACACAAAAAGAAACGTTGAAACCAGATAATCCGATTAATGAAGAAGCAATAAAATTGATATTGGGAGGTCTCTATCTTCTGTGGAGAAGTT</canonical>
            <polymorphic>TTTTCGGGAAATCCGAAAGACTGGGGTTCCCAACTTCTCGATTTGAACAAATCTGGTCCCTACAATAAGTTCAAAAGTCTAGAACGCCTCTCGATCTTTGTCTTCTTCGTCAGTGTCTGTCTCTCTTCACACTTTCACTTATTTCTTCAGAAAAACATAACCTACAGTACCCACCCAAAATCAACAGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAAGAATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGATAAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCSTAAATGTTCACCTTAGCGATGAGAATAAATTTGTTAAAAGTGCAACCTCCGGGTGAAAAAAATTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGTAGAATTTCAAAATAAGTCAACACTCAATTTTGAAAAAAAAACAAAAAAGTGGGTTAAAAGTTCCAGAGGTAGAGAAATCTTAAAGCTAAATCTAGATTTAGGTGATCGTGAAAAATGATAAAACACTGGGTGGTTTGAATTTTTAGTGGGCGGAATTTTTTCGAACGAGGTTTTTGGGGATATTGGATACAGCTAGAATTATCTTGCGAAGCTAATGAAAAATCAGATTTCCCAATAAAAATTGTCTTTGATTCCCATAAAAATTTGCTTCTTATTAATGGATGGCAGTACACAAAAAGAAACGTTGAAACCAGATAATCCGATTAATGAAGAAGCAATAAAATTGATATTGGGAGGTCTCTATCTTCTGTGGAGAAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTTCTCTCCTATCCCATTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAAAATTGAGTGTTGACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTTGTTAAAAGTGCAACCTCCGGGTGAAAAAAATTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGTAGAATTTCAAAATAAGTCAACACTCAATTTTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCSTAAATGTTCACCTTAGCGATGAGAATAAATTTGTTAAAAGTGCAACCTCCGGGTGAAAAAAATTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGTAGAATTTCAAAATAAGTCAACACTCAATTTTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9620</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>28415</contig_pos>
        <strand>+</strand>
        <context>CTGTTATGAY[A/C]AGGCGACACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGAT</left_flank>
        <right_flank>AGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGAACCACAAAAAGGCAAACAATAGTCAAAAATTGGATAAATCGGGAAAAAATGATGAAAAATTTTTAAGAAAATTCCTGTCGAGAAAAGTTATCGAAATTTTTCGGGAAATCCGAAAGACTGGGGTTCCCAACTTCTCGATTTGAACAAATCTGGTCCCTACAATAAGTTCAAAAGTCTAGAACGCCTCTCGATCTTTGTCTTCTTCGTCAGTGTCTGTCTCTCTTCACACTTTCACTTATTTCTTCAGAAAAACATAACCTACAGTACCCACCCAAAATCAACAGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAAGAATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGATAAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTTGTTAAAAGTGCAACCTCCGGGTGAAAAAAATTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGTAGAATTTCAAAATAAGTCAACACTCAATTTTGAAAAAAAAACAAAAAAGTGGGTTAAAAGTTCCAGAGGTAGAGAAATCTTAAAGCTAAATCTAGATTTAGGTGATCGTGAAAAATGATAAAACACTGGGTGGTTTGAATTTTTAGTGGGCGGAATTTTTTCGAACGAGGTTTTTGGGGATATTGGATACAGCTAGAATTATCTTGCGAAGCTAATGAAAAATCAGATTTCCCAATAAAAATTGTCTTTGATTCCCATAAAAATTTGCTTCTTATTAAT</canonical>
            <polymorphic>ACGAACCACAAAAAGGCAAACAATAGTCAAAAATTGGATAAATCGGGAAAAAATGATGAAAAATTTTTAAGAAAATTCCTGTCGAGAAAAGTTATCGAAATTTTTCGGGAAATCCGAAAGACTGGGGTTCCCAACTTCTCGATTTGAACAAATCTGGTCCCTACAATAAGTTCAAAAGTCTAGAACGCCTCTCGATCTTTGTCTTCTTCGTCAGTGTCTGTCTCTCTTCACACTTTCACTTATTTCTTCAGAAAAACATAACCTACAGTACCCACCCAAAATCAACAGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAAGAATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGATMAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTTGTTAAAAGTGCAACCTCCGGGTGAAAAAAATTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGTAGAATTTCAAAATAAGTCAACACTCAATTTTGAAAAAAAAACAAAAAAGTGGGTTAAAAGTTCCAGAGGTAGAGAAATCTTAAAGCTAAATCTAGATTTAGGTGATCGTGAAAAATGATAAAACACTGGGTGGTTTGAATTTTTAGTGGGCGGAATTTTTTCGAACGAGGTTTTTGGGGATATTGGATACAGCTAGAATTATCTTGCGAAGCTAATGAAAAATCAGATTTCCCAATAAAAATTGTCTTTGATTCCCATAAAAATTTGCTTCTTATTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTAAACAAAAGGTTGGATGAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTATTCTCATCGCTAAGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTAAACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAAGAATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGATAAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTT</canonical_amplicon>
		<polymorphic_amplicon>ACTAAACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAAGAATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGATMAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9621</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>28414</contig_pos>
        <strand>+</strand>
        <context>CCTGTTATGA[C/T]MAGGCGACAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGA</left_flank>
        <right_flank>AAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACGAACCACAAAAAGGCAAACAATAGTCAAAAATTGGATAAATCGGGAAAAAATGATGAAAAATTTTTAAGAAAATTCCTGTCGAGAAAAGTTATCGAAATTTTTCGGGAAATCCGAAAGACTGGGGTTCCCAACTTCTCGATTTGAACAAATCTGGTCCCTACAATAAGTTCAAAAGTCTAGAACGCCTCTCGATCTTTGTCTTCTTCGTCAGTGTCTGTCTCTCTTCACACTTTCACTTATTTCTTCAGAAAAACATAACCTACAGTACCCACCCAAAATCAACAGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAAGAATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGATAAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTTGTTAAAAGTGCAACCTCCGGGTGAAAAAAATTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGTAGAATTTCAAAATAAGTCAACACTCAATTTTGAAAAAAAAACAAAAAAGTGGGTTAAAAGTTCCAGAGGTAGAGAAATCTTAAAGCTAAATCTAGATTTAGGTGATCGTGAAAAATGATAAAACACTGGGTGGTTTGAATTTTTAGTGGGCGGAATTTTTTCGAACGAGGTTTTTGGGGATATTGGATACAGCTAGAATTATCTTGCGAAGCTAATGAAAAATCAGATTTCCCAATAAAAATTGTCTTTGATTCCCATAAAAATTTGCTTCTTATTAA</canonical>
            <polymorphic>CACGAACCACAAAAAGGCAAACAATAGTCAAAAATTGGATAAATCGGGAAAAAATGATGAAAAATTTTTAAGAAAATTCCTGTCGAGAAAAGTTATCGAAATTTTTCGGGAAATCCGAAAGACTGGGGTTCCCAACTTCTCGATTTGAACAAATCTGGTCCCTACAATAAGTTCAAAAGTCTAGAACGCCTCTCGATCTTTGTCTTCTTCGTCAGTGTCTGTCTCTCTTCACACTTTCACTTATTTCTTCAGAAAAACATAACCTACAGTACCCACCCAAAATCAACAGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAAGAATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGAYAAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTTGTTAAAAGTGCAACCTCCGGGTGAAAAAAATTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGTAGAATTTCAAAATAAGTCAACACTCAATTTTGAAAAAAAAACAAAAAAGTGGGTTAAAAGTTCCAGAGGTAGAGAAATCTTAAAGCTAAATCTAGATTTAGGTGATCGTGAAAAATGATAAAACACTGGGTGGTTTGAATTTTTAGTGGGCGGAATTTTTTCGAACGAGGTTTTTGGGGATATTGGATACAGCTAGAATTATCTTGCGAAGCTAATGAAAAATCAGATTTCCCAATAAAAATTGTCTTTGATTCCCATAAAAATTTGCTTCTTATTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTAAACAAAAGGTTGGATGAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTATTCTCATCGCTAAGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTAAACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAAGAATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGATAAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTT</canonical_amplicon>
		<polymorphic_amplicon>ACTAAACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAAGAATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGAYAAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9622</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>28343</contig_pos>
        <strand>+</strand>
        <context>TTTCTTCCAA[G/T]AATCTGACAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCAACGACTAAACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAA</left_flank>
        <right_flank>AATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCTTAAAATTTTTACGTCAAGTTTTGTATATTTCTTTAAGTTTCTCATAGGTTATGATGAATCCTCTTCACGAACCACAAAAAGGCAAACAATAGTCAAAAATTGGATAAATCGGGAAAAAATGATGAAAAATTTTTAAGAAAATTCCTGTCGAGAAAAGTTATCGAAATTTTTCGGGAAATCCGAAAGACTGGGGTTCCCAACTTCTCGATTTGAACAAATCTGGTCCCTACAATAAGTTCAAAAGTCTAGAACGCCTCTCGATCTTTGTCTTCTTCGTCAGTGTCTGTCTCTCTTCACACTTTCACTTATTTCTTCAGAAAAACATAACCTACAGTACCCACCCAAAATCAACAGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAAGAATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGATAAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTTGTTAAAAGTGCAACCTCCGGGTGAAAAAAATTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGTAGAATTTCAAAATAAGTCAACACTCAATTTTGAAAAAAAAACAAAAAAGTGGGTTAAAAGTTCCAGAGGTAGAGAAATCTTAAAGCTAAATCTAGATTTAGGTGATCGTGAAAAATGATAAAACACTGGGTGGTTTGAATTTTTAGTGGGCGGAATTTTTTCGAACGAGGTTTTTGGGGATATTGGATACAGCTAGAATTATCTTGC</canonical>
            <polymorphic>ATTTCTTAAAATTTTTACGTCAAGTTTTGTATATTTCTTTAAGTTTCTCATAGGTTATGATGAATCCTCTTCACGAACCACAAAAAGGCAAACAATAGTCAAAAATTGGATAAATCGGGAAAAAATGATGAAAAATTTTTAAGAAAATTCCTGTCGAGAAAAGTTATCGAAATTTTTCGGGAAATCCGAAAGACTGGGGTTCCCAACTTCTCGATTTGAACAAATCTGGTCCCTACAATAAGTTCAAAAGTCTAGAACGCCTCTCGATCTTTGTCTTCTTCGTCAGTGTCTGTCTCTCTTCACACTTTCACTTATTTCTTCAGAAAAACATAACCTACAGTACCCACCCAAAATCAACAGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAAKAATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGATAAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTTGTTAAAAGTGCAACCTCCGGGTGAAAAAAATTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGTAGAATTTCAAAATAAGTCAACACTCAATTTTGAAAAAAAAACAAAAAAGTGGGTTAAAAGTTCCAGAGGTAGAGAAATCTTAAAGCTAAATCTAGATTTAGGTGATCGTGAAAAATGATAAAACACTGGGTGGTTTGAATTTTTAGTGGGCGGAATTTTTTCGAACGAGGTTTTTGGGGATATTGGATACAGCTAGAATTATCTTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>500 438 62</canonical_bands>
                <polymorphic_bands>938 62</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 438 62</canonical_bands>
                <polymorphic_bands>938 62</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACTTTCTAATGCCAACCTACTA</pcr_primer_p1>
		<pcr_primer_p2>AAAGATACGGTAGTCAAGGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAAGAATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGATAAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTT</canonical_amplicon>
		<polymorphic_amplicon>CACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAAKAATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGATAAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9623</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>28202</contig_pos>
        <strand>+</strand>
        <context>CAAAAYCAAC[A/G]GAATTCTGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACTTATTTCTTCAGAAAAACATAACCTACAGTACCCACCCAAAATCAAC</left_flank>
        <right_flank>GAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTTTGTGTTTCGGAGAATGAGAAGTTGAAAAATTACCGAAATGGACTGATGGAAGAATTTTTGATCCAGAACAATTTCCAAAAAAACATTTTACGGGAATTTTTGTTCTAGAAAATTGAGCAAATTGGGTTTAAATTGAATTTCTTAAAATTTTTACGTCAAGTTTTGTATATTTCTTTAAGTTTCTCATAGGTTATGATGAATCCTCTTCACGAACCACAAAAAGGCAAACAATAGTCAAAAATTGGATAAATCGGGAAAAAATGATGAAAAATTTTTAAGAAAATTCCTGTCGAGAAAAGTTATCGAAATTTTTCGGGAAATCCGAAAGACTGGGGTTCCCAACTTCTCGATTTGAACAAATCTGGTCCCTACAATAAGTTCAAAAGTCTAGAACGCCTCTCGATCTTTGTCTTCTTCGTCAGTGTCTGTCTCTCTTCACACTTTCACTTATTTCTTCAGAAAAACATAACCTACAGTACCCACCCAAAATCAACAGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAAGAATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGATAAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTTGTTAAAAGTGCAACCTCCGGGTGAAAAAAATTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGTAGAATTTCAAAATAAGTCAACACTCAATTTTGAAAAAAAAACAAAAAAGTGGGTTAAAAGTTCCAG</canonical>
            <polymorphic>GGTTTTGTGTTTCGGAGAATGAGAAGTTGAAAAATTACCGAAATGGACTGATGGAAGAATTTTTGATCCAGAACAATTTCCAAAAAAACATTTTACGGGAATTTTTGTTCTAGAAAATTGAGCAAATTGGGTTTAAATTGAATTTCTTAAAATTTTTACGTCAAGTTTTGTATATTTCTTTAAGTTTCTCATAGGTTATGATGAATCCTCTTCACGAACCACAAAAAGGCAAACAATAGTCAAAAATTGGATAAATCGGGAAAAAATGATGAAAAATTTTTAAGAAAATTCCTGTCGAGAAAAGTTATCGAAATTTTTCGGGAAATCCGAAAGACTGGGGTTCCCAACTTCTCGATTTGAACAAATCTGGTCCCTACAATAAGTTCAAAAGTCTAGAACGCCTCTCGATCTTTGTCTTCTTCGTCAGTGTCTGTCTCTCTTCACACTTTCACTTATTTCTTCAGAAAAACATAACCTACAGTACCCACCCAAAATCAACRGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAAGAATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGATAAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTTGTTAAAAGTGCAACCTCCGGGTGAAAAAAATTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGTAGAATTTCAAAATAAGTCAACACTCAATTTTGAAAAAAAAACAAAAAAGTGGGTTAAAAGTTCCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCCTACAATAAGTTCAAAAGTC</pcr_primer_p1>
		<pcr_primer_p2>TAATTCATCCAACCTTTTGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCCCTACAATAAGTTCAAAAGTCTAGAACGCCTCTCGATCTTTGTCTTCTTCGTCAGTGTCTGTCTCTCTTCACACTTTCACTTATTTCTTCAGAAAAACATAACCTACAGTACCCACCCAAAATCAACAGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTA</canonical_amplicon>
		<polymorphic_amplicon>TCCCTACAATAAGTTCAAAAGTCTAGAACGCCTCTCGATCTTTGTCTTCTTCGTCAGTGTCTGTCTCTCTTCACACTTTCACTTATTTCTTCAGAAAAACATAACCTACAGTACCCACCCAAAATCAACRGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9624</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>28197</contig_pos>
        <strand>+</strand>
        <context>CCACCCAAAA[C/T]CAACRGAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTTTCACTTATTTCTTCAGAAAAACATAACCTACAGTACCCACCCAAAA</left_flank>
        <right_flank>CAACAGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCTGGTTTTGTGTTTCGGAGAATGAGAAGTTGAAAAATTACCGAAATGGACTGATGGAAGAATTTTTGATCCAGAACAATTTCCAAAAAAACATTTTACGGGAATTTTTGTTCTAGAAAATTGAGCAAATTGGGTTTAAATTGAATTTCTTAAAATTTTTACGTCAAGTTTTGTATATTTCTTTAAGTTTCTCATAGGTTATGATGAATCCTCTTCACGAACCACAAAAAGGCAAACAATAGTCAAAAATTGGATAAATCGGGAAAAAATGATGAAAAATTTTTAAGAAAATTCCTGTCGAGAAAAGTTATCGAAATTTTTCGGGAAATCCGAAAGACTGGGGTTCCCAACTTCTCGATTTGAACAAATCTGGTCCCTACAATAAGTTCAAAAGTCTAGAACGCCTCTCGATCTTTGTCTTCTTCGTCAGTGTCTGTCTCTCTTCACACTTTCACTTATTTCTTCAGAAAAACATAACCTACAGTACCCACCCAAAATCAACAGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAAGAATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGATAAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTTGTTAAAAGTGCAACCTCCGGGTGAAAAAAATTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGTAGAATTTCAAAATAAGTCAACACTCAATTTTGAAAAAAAAACAAAAAAGTGGGTTAAAAGT</canonical>
            <polymorphic>TGTCTGGTTTTGTGTTTCGGAGAATGAGAAGTTGAAAAATTACCGAAATGGACTGATGGAAGAATTTTTGATCCAGAACAATTTCCAAAAAAACATTTTACGGGAATTTTTGTTCTAGAAAATTGAGCAAATTGGGTTTAAATTGAATTTCTTAAAATTTTTACGTCAAGTTTTGTATATTTCTTTAAGTTTCTCATAGGTTATGATGAATCCTCTTCACGAACCACAAAAAGGCAAACAATAGTCAAAAATTGGATAAATCGGGAAAAAATGATGAAAAATTTTTAAGAAAATTCCTGTCGAGAAAAGTTATCGAAATTTTTCGGGAAATCCGAAAGACTGGGGTTCCCAACTTCTCGATTTGAACAAATCTGGTCCCTACAATAAGTTCAAAAGTCTAGAACGCCTCTCGATCTTTGTCTTCTTCGTCAGTGTCTGTCTCTCTTCACACTTTCACTTATTTCTTCAGAAAAACATAACCTACAGTACCCACCCAAAAYCAACAGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAAGAATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGATAAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTTGTTAAAAGTGCAACCTCCGGGTGAAAAAAATTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGTAGAATTTCAAAATAAGTCAACACTCAATTTTGAAAAAAAAACAAAAAAGTGGGTTAAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCCTACAATAAGTTCAAAAGTC</pcr_primer_p1>
		<pcr_primer_p2>TAATTCATCCAACCTTTTGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCCCTACAATAAGTTCAAAAGTCTAGAACGCCTCTCGATCTTTGTCTTCTTCGTCAGTGTCTGTCTCTCTTCACACTTTCACTTATTTCTTCAGAAAAACATAACCTACAGTACCCACCCAAAATCAACAGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTA</canonical_amplicon>
		<polymorphic_amplicon>TCCCTACAATAAGTTCAAAAGTCTAGAACGCCTCTCGATCTTTGTCTTCTTCGTCAGTGTCTGTCTCTCTTCACACTTTCACTTATTTCTTCAGAAAAACATAACCTACAGTACCCACCCAAAAYCAACAGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9625</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>28166</contig_pos>
        <strand>+</strand>
        <context>TATTTMTTCA[A/G]AAAAACATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCTTCTTCGTCAGTGTCTGTCTCTCTTCACACTTTCACTTATTTCTTCA</left_flank>
        <right_flank>AAAAACATAACCTACAGTACCCACCCAAAATCAACAGAATTCTGTTCTCT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATGGGAACAAAGGGGATAAGTACTTCATTTGTCTGGTTTTGTGTTTCGGAGAATGAGAAGTTGAAAAATTACCGAAATGGACTGATGGAAGAATTTTTGATCCAGAACAATTTCCAAAAAAACATTTTACGGGAATTTTTGTTCTAGAAAATTGAGCAAATTGGGTTTAAATTGAATTTCTTAAAATTTTTACGTCAAGTTTTGTATATTTCTTTAAGTTTCTCATAGGTTATGATGAATCCTCTTCACGAACCACAAAAAGGCAAACAATAGTCAAAAATTGGATAAATCGGGAAAAAATGATGAAAAATTTTTAAGAAAATTCCTGTCGAGAAAAGTTATCGAAATTTTTCGGGAAATCCGAAAGACTGGGGTTCCCAACTTCTCGATTTGAACAAATCTGGTCCCTACAATAAGTTCAAAAGTCTAGAACGCCTCTCGATCTTTGTCTTCTTCGTCAGTGTCTGTCTCTCTTCACACTTTCACTTATTTCTTCAGAAAAACATAACCTACAGTACCCACCCAAAATCAACAGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAAGAATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGATAAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTTGTTAAAAGTGCAACCTCCGGGTGAAAAAAATTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGTAGAATTTCAAAATAAGTCAACACTCAATTT</canonical>
            <polymorphic>GGATGGGAACAAAGGGGATAAGTACTTCATTTGTCTGGTTTTGTGTTTCGGAGAATGAGAAGTTGAAAAATTACCGAAATGGACTGATGGAAGAATTTTTGATCCAGAACAATTTCCAAAAAAACATTTTACGGGAATTTTTGTTCTAGAAAATTGAGCAAATTGGGTTTAAATTGAATTTCTTAAAATTTTTACGTCAAGTTTTGTATATTTCTTTAAGTTTCTCATAGGTTATGATGAATCCTCTTCACGAACCACAAAAAGGCAAACAATAGTCAAAAATTGGATAAATCGGGAAAAAATGATGAAAAATTTTTAAGAAAATTCCTGTCGAGAAAAGTTATCGAAATTTTTCGGGAAATCCGAAAGACTGGGGTTCCCAACTTCTCGATTTGAACAAATCTGGTCCCTACAATAAGTTCAAAAGTCTAGAACGCCTCTCGATCTTTGTCTTCTTCGTCAGTGTCTGTCTCTCTTCACACTTTCACTTATTTCTTCARAAAAACATAACCTACAGTACCCACCCAAAATCAACAGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAAGAATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGATAAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTTGTTAAAAGTGCAACCTCCGGGTGAAAAAAATTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGTAGAATTTCAAAATAAGTCAACACTCAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>318 314 183 135 50</canonical_bands>
                <polymorphic_bands>318 318 314 50</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCCTACAATAAGTTCAAAAGTC</pcr_primer_p1>
		<pcr_primer_p2>TAATTCATCCAACCTTTTGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCCCTACAATAAGTTCAAAAGTCTAGAACGCCTCTCGATCTTTGTCTTCTTCGTCAGTGTCTGTCTCTCTTCACACTTTCACTTATTTCTTCAGAAAAACATAACCTACAGTACCCACCCAAAATCAACAGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTA</canonical_amplicon>
		<polymorphic_amplicon>TCCCTACAATAAGTTCAAAAGTCTAGAACGCCTCTCGATCTTTGTCTTCTTCGTCAGTGTCTGTCTCTCTTCACACTTTCACTTATTTCTTCARAAAAACATAACCTACAGTACCCACCCAAAATCAACAGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9633</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>31787</contig_pos>
        <strand>+</strand>
        <context>GGCAGACAGA[A/G]CAGGCGTGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACAAATCATTTTACCAGGTATCCAGATAAATTAAGTCAAGGCAGACAGA</left_flank>
        <right_flank>CAGGCGTGATACAATTTCACGGTAGTATTAGTGTCCAATCGAAATTGTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATTACCTGATAAGATCCATCGATGGTGGAAGATCATCCGGAAAACTGTCCCAGGAAATATCCGACGCGGTATCAAACGCAGAGTCGACGTTTGATAAGCAACTCATTATCTCAGAGTATATCAACAAACGAATAGCTGGCTTGAATTTTCCTGATTTTTTTTGAATGAATACCAATTAGTTCAAACAAACAGTGTGGAAAACACAAAAAAGTACAAAAGAGGGCGGGATTGACAGAGCACATGTTCACGAGACCTGGTGACGAAAAGACAAAAAAGGTGCCGCCGGTAGTGGAAAAGAAAAGTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAGGGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCCAGGAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTAGACAAATCATTTTACCAGGTATCCAGATAAATTAAGTCAAGGCAGACAGAGCAGGCGTGATACAATTTCACGGTAGTATTAGTGTCCAATCGAAATTGTTTTAAATGATAAATCAGCCTGAACTACGATTCAGGAAAGGTCGGAATATTCAGATTTTCAAATCTCAAATTTTTGGAATTTTGGAAGATTCCGATTTTGGAAATTTCGGATTTTTGGAAATTTTCTATTTTCAATATTTCAAAGTTTCTGAATTTTGAAACATCCCAAATTTCAAAACTTCGGAATATCGAAATATTCCGATTTTAGAATTTTCAAAGTTCCTTGGAATATTCCCGATTTTCAAAATTTTGAACATTTATTCCGAAAAAAAAATGCTTTGGGAAAGTTTCTATTGGATGTTTCATCAAAAAATAATTGAAATTTATGAAATTTTCAAAACTTTTTCAATTCTCTATTCCGTTCCGAACATCCCTGTTACGATTAGACAAAAATCTTCGCTCATAAGATAAATAAAAAACAAAAAAAAAACTGAAACTCCATAAACAGTTTTA</canonical>
            <polymorphic>ACATTACCTGATAAGATCCATCGATGGTGGAAGATCATCCGGAAAACTGTCCCAGGAAATATCCGACGCGGTATCAAACGCAGAGTCGACGTTTGATAAGCAACTCATTATCTCAGAGTATATCAACAAACGAATAGCTGGCTTGAATTTTCCTGATTTTTTTTGAATGAATACCAATTAGTTCAAACAAACAGTGTGGAAAACACAAAAAAGTACAAAAGAGGGCGGGATTGACAGAGCACATGTTCACGAGACCTGGTGACGAAAAGACAAAAAAGGTGCCGCCGGTAGTGGAAAAGAAAAGTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAGGGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCCAGGAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTAGACAAATCATTTTACCAGGTATCCAGATAAATTAAGTCAAGGCAGACAGARCAGGCGTGATACAATTTCACGGTAGTATTAGTGTCCAATCGAAATTGTTTTAAATGATAAATCAGCCTGAACTACGATTCAGGAAAGGTCGGAATATTCAGATTTTCAAATCTCAAATTTTTGGAATTTTGGAAGATTCCGATTTTGGAAATTTCGGATTTTTGGAAATTTTCTATTTTCAATATTTCAAAGTTTCTGAATTTTGAAACATCCCAAATTTCAAAACTTCGGAATATCGAAATATTCCGATTTTAGAATTTTCAAAGTTCCTTGGAATATTCCCGATTTTCAAAATTTTGAACATTTATTCCGAAAAAAAAATGCTTTGGGAAAGTTTCTATTGGATGTTTCATCAAAAAATAATTGAAATTTATGAAATTTTCAAAACTTTTTCAATTCTCTATTCCGTTCCGAACATCCCTGTTACGATTAGACAAAAATCTTCGCTCATAAGATAAATAAAAAACAAAAAAAAAACTGAAACTCCATAAACAGTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 363 139</canonical_bands>
                <polymorphic_bands>861 139</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAAAAGTGAAGAGGTTTGATT</pcr_primer_p1>
		<pcr_primer_p2>TAAAACAATTTCGATTGGACA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AAGAAAAGTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAGGGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCCAGGAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTAGACAAATCATTTTACCAGGTATCCAGATAAATTAAGTCAAGGCAGACAGAGCAGGCGTGATACAATTTCACGGTAGTATTAGTGTCCAATCGAAATTGTTTTA</canonical_amplicon>
		<polymorphic_amplicon>AAGAAAAGTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAGGGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCCAGGAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTAGACAAATCATTTTACCAGGTATCCAGATAAATTAAGTCAAGGCAGACAGARCAGGCGTGATACAATTTCACGGTAGTATTAGTGTCCAATCGAAATTGTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9634</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>31758</contig_pos>
        <strand>+</strand>
        <context>TTACCAGGTA[C/T]CCAGATAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCACAGATATTTAGTTATATTCCCATGTAGACAAATCATTTTACCAGGTA</left_flank>
        <right_flank>CCAGATAAATTAAGTCAAGGCAGACAGAGCAGGCGTGATACAATTTCACG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGGGTGTTTAAAAAGCCGAACTTCTGGAACATTACCTGATAAGATCCATCGATGGTGGAAGATCATCCGGAAAACTGTCCCAGGAAATATCCGACGCGGTATCAAACGCAGAGTCGACGTTTGATAAGCAACTCATTATCTCAGAGTATATCAACAAACGAATAGCTGGCTTGAATTTTCCTGATTTTTTTTGAATGAATACCAATTAGTTCAAACAAACAGTGTGGAAAACACAAAAAAGTACAAAAGAGGGCGGGATTGACAGAGCACATGTTCACGAGACCTGGTGACGAAAAGACAAAAAAGGTGCCGCCGGTAGTGGAAAAGAAAAGTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAGGGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCCAGGAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTAGACAAATCATTTTACCAGGTATCCAGATAAATTAAGTCAAGGCAGACAGAGCAGGCGTGATACAATTTCACGGTAGTATTAGTGTCCAATCGAAATTGTTTTAAATGATAAATCAGCCTGAACTACGATTCAGGAAAGGTCGGAATATTCAGATTTTCAAATCTCAAATTTTTGGAATTTTGGAAGATTCCGATTTTGGAAATTTCGGATTTTTGGAAATTTTCTATTTTCAATATTTCAAAGTTTCTGAATTTTGAAACATCCCAAATTTCAAAACTTCGGAATATCGAAATATTCCGATTTTAGAATTTTCAAAGTTCCTTGGAATATTCCCGATTTTCAAAATTTTGAACATTTATTCCGAAAAAAAAATGCTTTGGGAAAGTTTCTATTGGATGTTTCATCAAAAAATAATTGAAATTTATGAAATTTTCAAAACTTTTTCAATTCTCTATTCCGTTCCGAACATCCCTGTTACGATTAGACAAAAATCTTCGCTCATAAGATAAATAAAAAACAAAA</canonical>
            <polymorphic>AGGGGTGTTTAAAAAGCCGAACTTCTGGAACATTACCTGATAAGATCCATCGATGGTGGAAGATCATCCGGAAAACTGTCCCAGGAAATATCCGACGCGGTATCAAACGCAGAGTCGACGTTTGATAAGCAACTCATTATCTCAGAGTATATCAACAAACGAATAGCTGGCTTGAATTTTCCTGATTTTTTTTGAATGAATACCAATTAGTTCAAACAAACAGTGTGGAAAACACAAAAAAGTACAAAAGAGGGCGGGATTGACAGAGCACATGTTCACGAGACCTGGTGACGAAAAGACAAAAAAGGTGCCGCCGGTAGTGGAAAAGAAAAGTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAGGGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCCAGGAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTAGACAAATCATTTTACCAGGTAYCCAGATAAATTAAGTCAAGGCAGACAGAGCAGGCGTGATACAATTTCACGGTAGTATTAGTGTCCAATCGAAATTGTTTTAAATGATAAATCAGCCTGAACTACGATTCAGGAAAGGTCGGAATATTCAGATTTTCAAATCTCAAATTTTTGGAATTTTGGAAGATTCCGATTTTGGAAATTTCGGATTTTTGGAAATTTTCTATTTTCAATATTTCAAAGTTTCTGAATTTTGAAACATCCCAAATTTCAAAACTTCGGAATATCGAAATATTCCGATTTTAGAATTTTCAAAGTTCCTTGGAATATTCCCGATTTTCAAAATTTTGAACATTTATTCCGAAAAAAAAATGCTTTGGGAAAGTTTCTATTGGATGTTTCATCAAAAAATAATTGAAATTTATGAAATTTTCAAAACTTTTTCAATTCTCTATTCCGTTCCGAACATCCCTGTTACGATTAGACAAAAATCTTCGCTCATAAGATAAATAAAAAACAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>224 201 190 113 108 96 43 25</canonical_bands>
                <polymorphic_bands>332 201 190 113 96 43 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGAAAAGTGAAGAGGTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>TTCGATTGGACACTAATACTACC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAGAAAAGTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAGGGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCCAGGAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTAGACAAATCATTTTACCAGGTATCCAGATAAATTAAGTCAAGGCAGACAGAGCAGGCGTGATACAATTTCACGGTAGTATTAGTGTCCAATCGAA</canonical_amplicon>
		<polymorphic_amplicon>AAAGAAAAGTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAGGGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCCAGGAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTAGACAAATCATTTTACCAGGTAYCCAGATAAATTAAGTCAAGGCAGACAGAGCAGGCGTGATACAATTTCACGGTAGTATTAGTGTCCAATCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9635</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>31737</contig_pos>
        <strand>+</strand>
        <context>TTCCCATGTA[A/G]ACAAATCATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTCCAGGAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTA</left_flank>
        <right_flank>ACAAATCATTTTACCAGGTATCCAGATAAATTAAGTCAAGGCAGACAGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATGATGTCGCAATCTGTCTAGGGGTGTTTAAAAAGCCGAACTTCTGGAACATTACCTGATAAGATCCATCGATGGTGGAAGATCATCCGGAAAACTGTCCCAGGAAATATCCGACGCGGTATCAAACGCAGAGTCGACGTTTGATAAGCAACTCATTATCTCAGAGTATATCAACAAACGAATAGCTGGCTTGAATTTTCCTGATTTTTTTTGAATGAATACCAATTAGTTCAAACAAACAGTGTGGAAAACACAAAAAAGTACAAAAGAGGGCGGGATTGACAGAGCACATGTTCACGAGACCTGGTGACGAAAAGACAAAAAAGGTGCCGCCGGTAGTGGAAAAGAAAAGTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAGGGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCCAGGAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTAGACAAATCATTTTACCAGGTATCCAGATAAATTAAGTCAAGGCAGACAGAGCAGGCGTGATACAATTTCACGGTAGTATTAGTGTCCAATCGAAATTGTTTTAAATGATAAATCAGCCTGAACTACGATTCAGGAAAGGTCGGAATATTCAGATTTTCAAATCTCAAATTTTTGGAATTTTGGAAGATTCCGATTTTGGAAATTTCGGATTTTTGGAAATTTTCTATTTTCAATATTTCAAAGTTTCTGAATTTTGAAACATCCCAAATTTCAAAACTTCGGAATATCGAAATATTCCGATTTTAGAATTTTCAAAGTTCCTTGGAATATTCCCGATTTTCAAAATTTTGAACATTTATTCCGAAAAAAAAATGCTTTGGGAAAGTTTCTATTGGATGTTTCATCAAAAAATAATTGAAATTTATGAAATTTTCAAAACTTTTTCAATTCTCTATTCCGTTCCGAACATCCCTGTTACGATTAGACAAAAATCTTCGCTCA</canonical>
            <polymorphic>CTATGATGTCGCAATCTGTCTAGGGGTGTTTAAAAAGCCGAACTTCTGGAACATTACCTGATAAGATCCATCGATGGTGGAAGATCATCCGGAAAACTGTCCCAGGAAATATCCGACGCGGTATCAAACGCAGAGTCGACGTTTGATAAGCAACTCATTATCTCAGAGTATATCAACAAACGAATAGCTGGCTTGAATTTTCCTGATTTTTTTTGAATGAATACCAATTAGTTCAAACAAACAGTGTGGAAAACACAAAAAAGTACAAAAGAGGGCGGGATTGACAGAGCACATGTTCACGAGACCTGGTGACGAAAAGACAAAAAAGGTGCCGCCGGTAGTGGAAAAGAAAAGTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAGGGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCCAGGAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTARACAAATCATTTTACCAGGTATCCAGATAAATTAAGTCAAGGCAGACAGAGCAGGCGTGATACAATTTCACGGTAGTATTAGTGTCCAATCGAAATTGTTTTAAATGATAAATCAGCCTGAACTACGATTCAGGAAAGGTCGGAATATTCAGATTTTCAAATCTCAAATTTTTGGAATTTTGGAAGATTCCGATTTTGGAAATTTCGGATTTTTGGAAATTTTCTATTTTCAATATTTCAAAGTTTCTGAATTTTGAAACATCCCAAATTTCAAAACTTCGGAATATCGAAATATTCCGATTTTAGAATTTTCAAAGTTCCTTGGAATATTCCCGATTTTCAAAATTTTGAACATTTATTCCGAAAAAAAAATGCTTTGGGAAAGTTTCTATTGGATGTTTCATCAAAAAATAATTGAAATTTATGAAATTTTCAAAACTTTTTCAATTCTCTATTCCGTTCCGAACATCCCTGTTACGATTAGACAAAAATCTTCGCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 362 136</canonical_bands>
                <polymorphic_bands>864 136</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGAAAAGTGAAGAGGTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>TTCGATTGGACACTAATACTACC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAGAAAAGTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAGGGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCCAGGAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTAGACAAATCATTTTACCAGGTATCCAGATAAATTAAGTCAAGGCAGACAGAGCAGGCGTGATACAATTTCACGGTAGTATTAGTGTCCAATCGAA</canonical_amplicon>
		<polymorphic_amplicon>AAAGAAAAGTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAGGGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCCAGGAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTARACAAATCATTTTACCAGGTATCCAGATAAATTAAGTCAAGGCAGACAGAGCAGGCGTGATACAATTTCACGGTAGTATTAGTGTCCAATCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9636</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>31709</contig_pos>
        <strand>+</strand>
        <context>ATATAGGGAT[C/T]ACAGATATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTATCAATTTCAAAGAGGTTATAGAAGTGTTCCAGGAGGAATATAGGGAT</left_flank>
        <right_flank>ACAGATATTTAGTTATATTCCCATGTAGACAAATCATTTTACCAGGTATC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCGATTTTACGGAACATCCGATAGAATCTATGATGTCGCAATCTGTCTAGGGGTGTTTAAAAAGCCGAACTTCTGGAACATTACCTGATAAGATCCATCGATGGTGGAAGATCATCCGGAAAACTGTCCCAGGAAATATCCGACGCGGTATCAAACGCAGAGTCGACGTTTGATAAGCAACTCATTATCTCAGAGTATATCAACAAACGAATAGCTGGCTTGAATTTTCCTGATTTTTTTTGAATGAATACCAATTAGTTCAAACAAACAGTGTGGAAAACACAAAAAAGTACAAAAGAGGGCGGGATTGACAGAGCACATGTTCACGAGACCTGGTGACGAAAAGACAAAAAAGGTGCCGCCGGTAGTGGAAAAGAAAAGTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAGGGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCCAGGAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTAGACAAATCATTTTACCAGGTATCCAGATAAATTAAGTCAAGGCAGACAGAGCAGGCGTGATACAATTTCACGGTAGTATTAGTGTCCAATCGAAATTGTTTTAAATGATAAATCAGCCTGAACTACGATTCAGGAAAGGTCGGAATATTCAGATTTTCAAATCTCAAATTTTTGGAATTTTGGAAGATTCCGATTTTGGAAATTTCGGATTTTTGGAAATTTTCTATTTTCAATATTTCAAAGTTTCTGAATTTTGAAACATCCCAAATTTCAAAACTTCGGAATATCGAAATATTCCGATTTTAGAATTTTCAAAGTTCCTTGGAATATTCCCGATTTTCAAAATTTTGAACATTTATTCCGAAAAAAAAATGCTTTGGGAAAGTTTCTATTGGATGTTTCATCAAAAAATAATTGAAATTTATGAAATTTTCAAAACTTTTTCAATTCTCTATTCCGTTCCGAACATCCCT</canonical>
            <polymorphic>CTCGATTTTACGGAACATCCGATAGAATCTATGATGTCGCAATCTGTCTAGGGGTGTTTAAAAAGCCGAACTTCTGGAACATTACCTGATAAGATCCATCGATGGTGGAAGATCATCCGGAAAACTGTCCCAGGAAATATCCGACGCGGTATCAAACGCAGAGTCGACGTTTGATAAGCAACTCATTATCTCAGAGTATATCAACAAACGAATAGCTGGCTTGAATTTTCCTGATTTTTTTTGAATGAATACCAATTAGTTCAAACAAACAGTGTGGAAAACACAAAAAAGTACAAAAGAGGGCGGGATTGACAGAGCACATGTTCACGAGACCTGGTGACGAAAAGACAAAAAAGGTGCCGCCGGTAGTGGAAAAGAAAAGTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAGGGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCCAGGAGGAATATAGGGATYACAGATATTTAGTTATATTCCCATGTAGACAAATCATTTTACCAGGTATCCAGATAAATTAAGTCAAGGCAGACAGAGCAGGCGTGATACAATTTCACGGTAGTATTAGTGTCCAATCGAAATTGTTTTAAATGATAAATCAGCCTGAACTACGATTCAGGAAAGGTCGGAATATTCAGATTTTCAAATCTCAAATTTTTGGAATTTTGGAAGATTCCGATTTTGGAAATTTCGGATTTTTGGAAATTTTCTATTTTCAATATTTCAAAGTTTCTGAATTTTGAAACATCCCAAATTTCAAAACTTCGGAATATCGAAATATTCCGATTTTAGAATTTTCAAAGTTCCTTGGAATATTCCCGATTTTCAAAATTTTGAACATTTATTCCGAAAAAAAAATGCTTTGGGAAAGTTTCTATTGGATGTTTCATCAAAAAATAATTGAAATTTATGAAATTTTCAAAACTTTTTCAATTCTCTATTCCGTTCCGAACATCCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>504 386 92 18</canonical_bands>
                <polymorphic_bands>890 92 18</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>389 167 85 56 51 36 34 25 23 20 15 14 13 12 12 11 10 8 7 5 5 2</canonical_bands>
                <polymorphic_bands>389 167 108 56 51 36 34 25 20 15 14 13 12 12 11 10 8 7 5 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGAAAAGTGAAGAGGTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>TTCGATTGGACACTAATACTACC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAGAAAAGTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAGGGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCCAGGAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTAGACAAATCATTTTACCAGGTATCCAGATAAATTAAGTCAAGGCAGACAGAGCAGGCGTGATACAATTTCACGGTAGTATTAGTGTCCAATCGAA</canonical_amplicon>
		<polymorphic_amplicon>AAAGAAAAGTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAGGGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCCAGGAGGAATATAGGGATYACAGATATTTAGTTATATTCCCATGTAGACAAATCATTTTACCAGGTATCCAGATAAATTAAGTCAAGGCAGACAGAGCAGGCGTGATACAATTTCACGGTAGTATTAGTGTCCAATCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9637</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>31693</contig_pos>
        <strand>+</strand>
        <context>AAGTGTTCYA[A/G]GAGGAATATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCCA</left_flank>
        <right_flank>GAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTAGACAAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACGATATGCACAATCTCGATTTTACGGAACATCCGATAGAATCTATGATGTCGCAATCTGTCTAGGGGTGTTTAAAAAGCCGAACTTCTGGAACATTACCTGATAAGATCCATCGATGGTGGAAGATCATCCGGAAAACTGTCCCAGGAAATATCCGACGCGGTATCAAACGCAGAGTCGACGTTTGATAAGCAACTCATTATCTCAGAGTATATCAACAAACGAATAGCTGGCTTGAATTTTCCTGATTTTTTTTGAATGAATACCAATTAGTTCAAACAAACAGTGTGGAAAACACAAAAAAGTACAAAAGAGGGCGGGATTGACAGAGCACATGTTCACGAGACCTGGTGACGAAAAGACAAAAAAGGTGCCGCCGGTAGTGGAAAAGAAAAGTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAGGGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCCAGGAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTAGACAAATCATTTTACCAGGTATCCAGATAAATTAAGTCAAGGCAGACAGAGCAGGCGTGATACAATTTCACGGTAGTATTAGTGTCCAATCGAAATTGTTTTAAATGATAAATCAGCCTGAACTACGATTCAGGAAAGGTCGGAATATTCAGATTTTCAAATCTCAAATTTTTGGAATTTTGGAAGATTCCGATTTTGGAAATTTCGGATTTTTGGAAATTTTCTATTTTCAATATTTCAAAGTTTCTGAATTTTGAAACATCCCAAATTTCAAAACTTCGGAATATCGAAATATTCCGATTTTAGAATTTTCAAAGTTCCTTGGAATATTCCCGATTTTCAAAATTTTGAACATTTATTCCGAAAAAAAAATGCTTTGGGAAAGTTTCTATTGGATGTTTCATCAAAAAATAATTGAAATTTATGAAATTTTCAAAACTTTTTCAATTCTCTATTC</canonical>
            <polymorphic>ACACGATATGCACAATCTCGATTTTACGGAACATCCGATAGAATCTATGATGTCGCAATCTGTCTAGGGGTGTTTAAAAAGCCGAACTTCTGGAACATTACCTGATAAGATCCATCGATGGTGGAAGATCATCCGGAAAACTGTCCCAGGAAATATCCGACGCGGTATCAAACGCAGAGTCGACGTTTGATAAGCAACTCATTATCTCAGAGTATATCAACAAACGAATAGCTGGCTTGAATTTTCCTGATTTTTTTTGAATGAATACCAATTAGTTCAAACAAACAGTGTGGAAAACACAAAAAAGTACAAAAGAGGGCGGGATTGACAGAGCACATGTTCACGAGACCTGGTGACGAAAAGACAAAAAAGGTGCCGCCGGTAGTGGAAAAGAAAAGTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAGGGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCCARGAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTAGACAAATCATTTTACCAGGTATCCAGATAAATTAAGTCAAGGCAGACAGAGCAGGCGTGATACAATTTCACGGTAGTATTAGTGTCCAATCGAAATTGTTTTAAATGATAAATCAGCCTGAACTACGATTCAGGAAAGGTCGGAATATTCAGATTTTCAAATCTCAAATTTTTGGAATTTTGGAAGATTCCGATTTTGGAAATTTCGGATTTTTGGAAATTTTCTATTTTCAATATTTCAAAGTTTCTGAATTTTGAAACATCCCAAATTTCAAAACTTCGGAATATCGAAATATTCCGATTTTAGAATTTTCAAAGTTCCTTGGAATATTCCCGATTTTCAAAATTTTGAACATTTATTCCGAAAAAAAAATGCTTTGGGAAAGTTTCTATTGGATGTTTCATCAAAAAATAATTGAAATTTATGAAATTTTCAAAACTTTTTCAATTCTCTATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>441 203 147 78 70 61</canonical_bands>
                <polymorphic_bands>441 203 147 139 70</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>441 203 147 78 70 61</canonical_bands>
                <polymorphic_bands>441 203 147 139 70</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGAAAAGTGAAGAGGTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>TTCGATTGGACACTAATACTACC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAGAAAAGTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAGGGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCCAGGAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTAGACAAATCATTTTACCAGGTATCCAGATAAATTAAGTCAAGGCAGACAGAGCAGGCGTGATACAATTTCACGGTAGTATTAGTGTCCAATCGAA</canonical_amplicon>
		<polymorphic_amplicon>AAAGAAAAGTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAGGGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCCARGAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTAGACAAATCATTTTACCAGGTATCCAGATAAATTAAGTCAAGGCAGACAGAGCAGGCGTGATACAATTTCACGGTAGTATTAGTGTCCAATCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9638</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>31691</contig_pos>
        <strand>+</strand>
        <context>AGAAGTGTTC[C/T]ARGAGGAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTC</left_flank>
        <right_flank>AGGAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTAGACAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACACGATATGCACAATCTCGATTTTACGGAACATCCGATAGAATCTATGATGTCGCAATCTGTCTAGGGGTGTTTAAAAAGCCGAACTTCTGGAACATTACCTGATAAGATCCATCGATGGTGGAAGATCATCCGGAAAACTGTCCCAGGAAATATCCGACGCGGTATCAAACGCAGAGTCGACGTTTGATAAGCAACTCATTATCTCAGAGTATATCAACAAACGAATAGCTGGCTTGAATTTTCCTGATTTTTTTTGAATGAATACCAATTAGTTCAAACAAACAGTGTGGAAAACACAAAAAAGTACAAAAGAGGGCGGGATTGACAGAGCACATGTTCACGAGACCTGGTGACGAAAAGACAAAAAAGGTGCCGCCGGTAGTGGAAAAGAAAAGTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAGGGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCCAGGAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTAGACAAATCATTTTACCAGGTATCCAGATAAATTAAGTCAAGGCAGACAGAGCAGGCGTGATACAATTTCACGGTAGTATTAGTGTCCAATCGAAATTGTTTTAAATGATAAATCAGCCTGAACTACGATTCAGGAAAGGTCGGAATATTCAGATTTTCAAATCTCAAATTTTTGGAATTTTGGAAGATTCCGATTTTGGAAATTTCGGATTTTTGGAAATTTTCTATTTTCAATATTTCAAAGTTTCTGAATTTTGAAACATCCCAAATTTCAAAACTTCGGAATATCGAAATATTCCGATTTTAGAATTTTCAAAGTTCCTTGGAATATTCCCGATTTTCAAAATTTTGAACATTTATTCCGAAAAAAAAATGCTTTGGGAAAGTTTCTATTGGATGTTTCATCAAAAAATAATTGAAATTTATGAAATTTTCAAAACTTTTTCAATTCTCTAT</canonical>
            <polymorphic>TGACACGATATGCACAATCTCGATTTTACGGAACATCCGATAGAATCTATGATGTCGCAATCTGTCTAGGGGTGTTTAAAAAGCCGAACTTCTGGAACATTACCTGATAAGATCCATCGATGGTGGAAGATCATCCGGAAAACTGTCCCAGGAAATATCCGACGCGGTATCAAACGCAGAGTCGACGTTTGATAAGCAACTCATTATCTCAGAGTATATCAACAAACGAATAGCTGGCTTGAATTTTCCTGATTTTTTTTGAATGAATACCAATTAGTTCAAACAAACAGTGTGGAAAACACAAAAAAGTACAAAAGAGGGCGGGATTGACAGAGCACATGTTCACGAGACCTGGTGACGAAAAGACAAAAAAGGTGCCGCCGGTAGTGGAAAAGAAAAGTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAGGGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCYAGGAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTAGACAAATCATTTTACCAGGTATCCAGATAAATTAAGTCAAGGCAGACAGAGCAGGCGTGATACAATTTCACGGTAGTATTAGTGTCCAATCGAAATTGTTTTAAATGATAAATCAGCCTGAACTACGATTCAGGAAAGGTCGGAATATTCAGATTTTCAAATCTCAAATTTTTGGAATTTTGGAAGATTCCGATTTTGGAAATTTCGGATTTTTGGAAATTTTCTATTTTCAATATTTCAAAGTTTCTGAATTTTGAAACATCCCAAATTTCAAAACTTCGGAATATCGAAATATTCCGATTTTAGAATTTTCAAAGTTCCTTGGAATATTCCCGATTTTCAAAATTTTGAACATTTATTCCGAAAAAAAAATGCTTTGGGAAAGTTTCTATTGGATGTTTCATCAAAAAATAATTGAAATTTATGAAATTTTCAAAACTTTTTCAATTCTCTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>439 203 149 78 70 61</canonical_bands>
                <polymorphic_bands>439 203 149 139 70</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>439 203 149 78 70 61</canonical_bands>
                <polymorphic_bands>439 203 149 139 70</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGAAAAGTGAAGAGGTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>TTCGATTGGACACTAATACTACC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAGAAAAGTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAGGGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCCAGGAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTAGACAAATCATTTTACCAGGTATCCAGATAAATTAAGTCAAGGCAGACAGAGCAGGCGTGATACAATTTCACGGTAGTATTAGTGTCCAATCGAA</canonical_amplicon>
		<polymorphic_amplicon>AAAGAAAAGTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAGGGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCYAGGAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTAGACAAATCATTTTACCAGGTATCCAGATAAATTAAGTCAAGGCAGACAGAGCAGGCGTGATACAATTTCACGGTAGTATTAGTGTCCAATCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9639</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>31641</contig_pos>
        <strand>+</strand>
        <context>GTGACGTGAG[A/G]GGTAAAAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAG</left_flank>
        <right_flank>GGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACTCATTGAAAGTGTGAACAAAAGATGCCGCAGTGAGAATAGGTAACTTGACACGATATGCACAATCTCGATTTTACGGAACATCCGATAGAATCTATGATGTCGCAATCTGTCTAGGGGTGTTTAAAAAGCCGAACTTCTGGAACATTACCTGATAAGATCCATCGATGGTGGAAGATCATCCGGAAAACTGTCCCAGGAAATATCCGACGCGGTATCAAACGCAGAGTCGACGTTTGATAAGCAACTCATTATCTCAGAGTATATCAACAAACGAATAGCTGGCTTGAATTTTCCTGATTTTTTTTGAATGAATACCAATTAGTTCAAACAAACAGTGTGGAAAACACAAAAAAGTACAAAAGAGGGCGGGATTGACAGAGCACATGTTCACGAGACCTGGTGACGAAAAGACAAAAAAGGTGCCGCCGGTAGTGGAAAAGAAAAGTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAGGGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCCAGGAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTAGACAAATCATTTTACCAGGTATCCAGATAAATTAAGTCAAGGCAGACAGAGCAGGCGTGATACAATTTCACGGTAGTATTAGTGTCCAATCGAAATTGTTTTAAATGATAAATCAGCCTGAACTACGATTCAGGAAAGGTCGGAATATTCAGATTTTCAAATCTCAAATTTTTGGAATTTTGGAAGATTCCGATTTTGGAAATTTCGGATTTTTGGAAATTTTCTATTTTCAATATTTCAAAGTTTCTGAATTTTGAAACATCCCAAATTTCAAAACTTCGGAATATCGAAATATTCCGATTTTAGAATTTTCAAAGTTCCTTGGAATATTCCCGATTTTCAAAATTTTGAACATTTATTCCGAAAAAAAAATGCTTTGGGAAAGTTTCTATTGGATGTTTCATC</canonical>
            <polymorphic>CAACTCATTGAAAGTGTGAACAAAAGATGCCGCAGTGAGAATAGGTAACTTGACACGATATGCACAATCTCGATTTTACGGAACATCCGATAGAATCTATGATGTCGCAATCTGTCTAGGGGTGTTTAAAAAGCCGAACTTCTGGAACATTACCTGATAAGATCCATCGATGGTGGAAGATCATCCGGAAAACTGTCCCAGGAAATATCCGACGCGGTATCAAACGCAGAGTCGACGTTTGATAAGCAACTCATTATCTCAGAGTATATCAACAAACGAATAGCTGGCTTGAATTTTCCTGATTTTTTTTGAATGAATACCAATTAGTTCAAACAAACAGTGTGGAAAACACAAAAAAGTACAAAAGAGGGCGGGATTGACAGAGCACATGTTCACGAGACCTGGTGACGAAAAGACAAAAAAGGTGCCGCCGGTAGTGGAAAAGAAAAGTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAGRGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCCAGGAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTAGACAAATCATTTTACCAGGTATCCAGATAAATTAAGTCAAGGCAGACAGAGCAGGCGTGATACAATTTCACGGTAGTATTAGTGTCCAATCGAAATTGTTTTAAATGATAAATCAGCCTGAACTACGATTCAGGAAAGGTCGGAATATTCAGATTTTCAAATCTCAAATTTTTGGAATTTTGGAAGATTCCGATTTTGGAAATTTCGGATTTTTGGAAATTTTCTATTTTCAATATTTCAAAGTTTCTGAATTTTGAAACATCCCAAATTTCAAAACTTCGGAATATCGAAATATTCCGATTTTAGAATTTTCAAAGTTCCTTGGAATATTCCCGATTTTCAAAATTTTGAACATTTATTCCGAAAAAAAAATGCTTTGGGAAAGTTTCTATTGGATGTTTCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAAAAGTGAAGAGGTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>TTCGATTGGACACTAATACTACC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAGAAAAGTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAGGGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCCAGGAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTAGACAAATCATTTTACCAGGTATCCAGATAAATTAAGTCAAGGCAGACAGAGCAGGCGTGATACAATTTCACGGTAGTATTAGTGTCCAATCGAA</canonical_amplicon>
		<polymorphic_amplicon>AAAGAAAAGTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAGRGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCCAGGAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTAGACAAATCATTTTACCAGGTATCCAGATAAATTAAGTCAAGGCAGACAGAGCAGGCGTGATACAATTTCACGGTAGTATTAGTGTCCAATCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9640</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>31276</contig_pos>
        <strand>+</strand>
        <context>TTTAAAAAGC[C/T]GAACTTCTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCCGATAGAATCTATGATGTCGCAATCTGTCTAGGGGTGTTTAAAAAGC</left_flank>
        <right_flank>GAACTTCTGGAACATTACCTGATAAGATCCATCGATGGTGGAAGATCATC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTTTGAAAAATGATTGAAAAATGAAAAATCGAGATAGTTTTCTCTAGTTTTGTCACAAAATTCCGTGAGTTATCTGAATCAAATATCGTGCCTCCTACCGAAACAAATGGACATTGACCCTTTGGTGTTCCCGCTTCTTCTTCGTCTTCTTTTTGTTTCTAAAAATCAGGGATTCAATCCCCCCCTTCTTTCCAAATTGTTTATTTATTTATGTATGTACAAGGGCATTTTTGACGAAGAGAGAGAATGCGAATCGGATGAAGAAAAAGAAGAACGCCGCACGTTTACGACTAGGAAGATGGGGGCGAAACAGAAGCAAAGATGAAACAAATGAGTGGTGCGGTATTGGCAAAACGATCGAGCAACTCATTGAAAGTGTGAACAAAAGATGCCGCAGTGAGAATAGGTAACTTGACACGATATGCACAATCTCGATTTTACGGAACATCCGATAGAATCTATGATGTCGCAATCTGTCTAGGGGTGTTTAAAAAGCCGAACTTCTGGAACATTACCTGATAAGATCCATCGATGGTGGAAGATCATCCGGAAAACTGTCCCAGGAAATATCCGACGCGGTATCAAACGCAGAGTCGACGTTTGATAAGCAACTCATTATCTCAGAGTATATCAACAAACGAATAGCTGGCTTGAATTTTCCTGATTTTTTTTGAATGAATACCAATTAGTTCAAACAAACAGTGTGGAAAACACAAAAAAGTACAAAAGAGGGCGGGATTGACAGAGCACATGTTCACGAGACCTGGTGACGAAAAGACAAAAAAGGTGCCGCCGGTAGTGGAAAAGAAAAGTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAGGGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCCAGGAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTAGACAAATCATTTTACCAGGTATCCAGATAAATTAAGTCAA</canonical>
            <polymorphic>AAACTTTGAAAAATGATTGAAAAATGAAAAATCGAGATAGTTTTCTCTAGTTTTGTCACAAAATTCCGTGAGTTATCTGAATCAAATATCGTGCCTCCTACCGAAACAAATGGACATTGACCCTTTGGTGTTCCCGCTTCTTCTTCGTCTTCTTTTTGTTTCTAAAAATCAGGGATTCAATCCCCCCCTTCTTTCCAAATTGTTTATTTATTTATGTATGTACAAGGGCATTTTTGACGAAGAGAGAGAATGCGAATCGGATGAAGAAAAAGAAGAACGCCGCACGTTTACGACTAGGAAGATGGGGGCGAAACAGAAGCAAAGATGAAACAAATGAGTGGTGCGGTATTGGCAAAACGATCGAGCAACTCATTGAAAGTGTGAACAAAAGATGCCGCAGTGAGAATAGGTAACTTGACACGATATGCACAATCTCGATTTTACGGAACATCCGATAGAATCTATGATGTCGCAATCTGTCTAGGGGTGTTTAAAAAGCYGAACTTCTGGAACATTACCTGATAAGATCCATCGATGGTGGAAGATCATCCGGAAAACTGTCCCAGGAAATATCCGACGCGGTATCAAACGCAGAGTCGACGTTTGATAAGCAACTCATTATCTCAGAGTATATCAACAAACGAATAGCTGGCTTGAATTTTCCTGATTTTTTTTGAATGAATACCAATTAGTTCAAACAAACAGTGTGGAAAACACAAAAAAGTACAAAAGAGGGCGGGATTGACAGAGCACATGTTCACGAGACCTGGTGACGAAAAGACAAAAAAGGTGCCGCCGGTAGTGGAAAAGAAAAGTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAGGGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCCAGGAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTAGACAAATCATTTTACCAGGTATCCAGATAAATTAAGTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>498 348 150 4</canonical_bands>
                <polymorphic_bands>648 348 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGAAAGTGTGAACAAAAGATG</pcr_primer_p1>
		<pcr_primer_p2>TAATGAGTTGCTTATCAAACGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTGAAAGTGTGAACAAAAGATGCCGCAGTGAGAATAGGTAACTTGACACGATATGCACAATCTCGATTTTACGGAACATCCGATAGAATCTATGATGTCGCAATCTGTCTAGGGGTGTTTAAAAAGCCGAACTTCTGGAACATTACCTGATAAGATCCATCGATGGTGGAAGATCATCCGGAAAACTGTCCCAGGAAATATCCGACGCGGTATCAAACGCAGAGTCGACGTTTGATAAGCAACTCATTA</canonical_amplicon>
		<polymorphic_amplicon>ATTGAAAGTGTGAACAAAAGATGCCGCAGTGAGAATAGGTAACTTGACACGATATGCACAATCTCGATTTTACGGAACATCCGATAGAATCTATGATGTCGCAATCTGTCTAGGGGTGTTTAAAAAGCYGAACTTCTGGAACATTACCTGATAAGATCCATCGATGGTGGAAGATCATCCGGAAAACTGTCCCAGGAAATATCCGACGCGGTATCAAACGCAGAGTCGACGTTTGATAAGCAACTCATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9641</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>57547</contig_pos>
        <strand></strand>
        <context>TTGTTCAACT[G/A]CAACAATAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTATTTTTGGAAAAAAAGGCGTGGCAGTGATCTTGGAGATTTGTTCAACT</left_flank>
        <right_flank>CAACAATAGCTCAAATGTGAAGAGTATTTTAGACTAGATTCACAGCATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTATTGTTATCATTAGTCATCGACCGGATTATAACTAGCAATCTGTTCGGTTGTTGACCTGTAAAAGGCGTTGTGAGCTCTCTGTGGCGAAAGTGGAGCCGGCTCTAGGTGCTGCGCCGAGCATGCCCGACTGATCTCGTCCTCGCTTCTCTGAGTGATTTGCACAGGTTTCGGTAGCATACACGTCGTCTCTTGCATTGGAGACGGCACGAATTTTTCTGAAGAAGATCTCGGGTTTTTTATATATTGCTTCTTTTATTGGTTTATTGGAAAAAAGGTCAGAAATGAGCACATACAGGCAAAAGTTATTTTCTCAAAAATCAAGAAAAAAGAATTTGATGGATAGTAGAAAAAGTGGAATGAATATGAAGAAGAAAATGTACACCATGCGAGAGCGAGATAAATGTAAGGACTACATTTGAAACTATTATTGTTGTTGATATTTTTGTATTTTTGGAAAAAAAGGCGTGGCAGTGATCTTGGAGATTTGTTCAACTGCAACAATAGCTCAAATGTGAAGAGTATTTTAGACTAGATTCACAGCATTTCCCGGGAATCAGATTCAGACACTGGACGCTCATAGACAATTTCCTGTTTAAAGCTCTCTTCAACAGTCTCATGCATTCCATGGCGGACCATTGATCCATTATCACTGTCATAAACATTGTTGGATGGTCTTCTAAGATAGTTCTGGGTCACTGCATATTCCCTTCTTCTGTATCCATCATCTGGCCCTCCAGATCGCTCGATATCCAAATTTCTTCCATTTCCATATCCATTTCCATATCCGTTTCTGTATCCTCCGTTACGCGATCCAGTGTCATATTTTCTACCGTACGCACTGTAGATATCATCCGGAGTACTGTACTTTTGCTCTTGGAATGCGTACTCGTCAACTAGACCATCATTGTTACGAAGGGCAGAATACTTGTTACCGGTAGAGGAGGAAGTAGCATTCAAGTCTGGAATGGGAAAGAGGGTTTAGAGAAGAAGGGGAA</canonical>
            <polymorphic>CTCTATTGTTATCATTAGTCATCGACCGGATTATAACTAGCAATCTGTTCGGTTGTTGACCTGTAAAAGGCGTTGTGAGCTCTCTGTGGCGAAAGTGGAGCCGGCTCTAGGTGCTGCGCCGAGCATGCCCGACTGATCTCGTCCTCGCTTCTCTGAGTGATTTGCACAGGTTTCGGTAGCATACACGTCGTCTCTTGCATTGGAGACGGCACGAATTTTTCTGAAGAAGATCTCGGGTTTTTTATATATTGCTTCTTTTATTGGTTTATTGGAAAAAAGGTCAGAAATGAGCACATACAGGCAAAAGTTATTTTCTCAAAAATCAAGAAAAAAGAATTTGATGGATAGTAGAAAAAGTGGAATGAATATGAAGAAGAAAATGTACACCATGCGAGAGCGAGATAAATGTAAGGACTACATTTGAAACTATTATTGTTGTTGATATTTTTGTATTTTTGGAAAAAAAGGCGTGGCAGTGATCTTGGAGATTTGTTCAACTRCAACAATAGCTCAAATGTGAAGAGTATTTTAGACTAGATTCACAGCATTTCCCGGGAATCAGATTCAGACACTGGACGCTCATAGACAATTTCCTGTTTAAAGCTCTCTTCAACAGTCTCATGCATTCCATGGCGGACCATTGATCCATTATCACTGTCATAAACATTGTTGGATGGTCTTCTAAGATAGTTCTGGGTCACTGCATATTCCCTTCTTCTGTATCCATCATCTGGCCCTCCAGATCGCTCGATATCCAAATTTCTTCCATTTCCATATCCATTTCCATATCCGTTTCTGTATCCTCCGTTACGCGATCCAGTGTCATATTTTCTACCGTACGCACTGTAGATATCATCCGGAGTACTGTACTTTTGCTCTTGGAATGCGTACTCGTCAACTAGACCATCATTGTTACGAAGGGCAGAATACTTGTTACCGGTAGAGGAGGAAGTAGCATTCAAGTCTGGAATGGGAAAGAGGGTTTAGAGAAGAAGGGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>494 382 76 34 14</canonical_bands>
                <polymorphic_bands>876 76 34 14</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>303 297 164 123 80 33</canonical_bands>
                <polymorphic_bands>426 297 164 80 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAAAAGTGGAATGAATATGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTAAACAGGAAATTGTCTATGAG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AGAAAAAGTGGAATGAATATGAAGAAGAAAATGTACACCATGCGAGAGCGAGATAAATGTAAGGACTACATTTGAAACTATTATTGTTGTTGATATTTTTGTATTTTTGGAAAAAAAGGCGTGGCAGTGATCTTGGAGATTTGTTCAACTGCAACAATAGCTCAAATGTGAAGAGTATTTTAGACTAGATTCACAGCATTTCCCGGGAATCAGATTCAGACACTGGACGCTCATAGACAATTTCCTGTTTAAA</canonical_amplicon>
		<polymorphic_amplicon>AGAAAAAGTGGAATGAATATGAAGAAGAAAATGTACACCATGCGAGAGCGAGATAAATGTAAGGACTACATTTGAAACTATTATTGTTGTTGATATTTTTGTATTTTTGGAAAAAAAGGCGTGGCAGTGATCTTGGAGATTTGTTCAACTRCAACAATAGCTCAAATGTGAAGAGTATTTTAGACTAGATTCACAGCATTTCCCGGGAATCAGATTCAGACACTGGACGCTCATAGACAATTTCCTGTTTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9642</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>60706</contig_pos>
        <strand>+</strand>
        <context>TAAATTGWAA[A/T]TTTCAAACTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAA</left_flank>
        <right_flank>TTTCAAACTTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGATGTGTCTGGCAGTATGTATACTGTAGGCTTTTGTTTTCACAGGAAAAATAAAGATAAAAGAGATAAAGTTAATTTCACAAGTTTTACTTAAAGTGCCGCATTTTGACTATTTTTAGAAGCTCAATTGTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAATTAAAAAAAACAACACACAAGAGAATTGATTCAACTTCGAAAACAAACTTTAAAATCTTAGATTTTTCAATTTTCATACGTATCTAAAATATTTATTCACACCTAAACGTTAGAAAATCTTTAAGAAAAAAAATGCAAAAAAATCAACGAAAAACTGTAGAAATTTGGAAAGCAGGAAGAAGTAGAAGTGTATGGACAAACAAATCAGTAGGAGGGCAACCTAAGAAATAGAGGTAGGGAAGAGAAGAGAGATAAAATGTTTTATTTGGGTAACGAGAACTGTAGGACGCAAGCCGAAAGCCGCTTGGCATAAGTGCGTAGGTGCTTTCCTCCTTCCGAGTGGAGCAAACATGAAACAACTTTTTGGCTTCTATATATTTTCTTTTCGTCTCTTTTTCTCCTCTTACAGGTTCACTCTCGTCGTTTTTTTATTGCGCAGTTTTTTTGTCTT</canonical>
            <polymorphic>TTGATGTGTCTGGCAGTATGTATACTGTAGGCTTTTGTTTTCACAGGAAAAATAAAGATAAAAGAGATAAAGTTAATTTCACAAGTTTTACTTAAAGTGCCGCATTTTGACTATTTTTAGAAGCTCAATTGTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAWTTTCAAACTTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAATTAAAAAAAACAACACACAAGAGAATTGATTCAACTTCGAAAACAAACTTTAAAATCTTAGATTTTTCAATTTTCATACGTATCTAAAATATTTATTCACACCTAAACGTTAGAAAATCTTTAAGAAAAAAAATGCAAAAAAATCAACGAAAAACTGTAGAAATTTGGAAAGCAGGAAGAAGTAGAAGTGTATGGACAAACAAATCAGTAGGAGGGCAACCTAAGAAATAGAGGTAGGGAAGAGAAGAGAGATAAAATGTTTTATTTGGGTAACGAGAACTGTAGGACGCAAGCCGAAAGCCGCTTGGCATAAGTGCGTAGGTGCTTTCCTCCTTCCGAGTGGAGCAAACATGAAACAACTTTTTGGCTTCTATATATTTTCTTTTCGTCTCTTTTTCTCCTCTTACAGGTTCACTCTCGTCGTTTTTTTATTGCGCAGTTTTTTTGTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>290 212 158 153 126 50 11</canonical_bands>
                <polymorphic_bands>370 290 153 126 50 11</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>290 118 93 74 69 52 50 49 45 43 39 27 25 11 8 7</canonical_bands>
                <polymorphic_bands>290 118 93 74 69 56 52 50 45 43 39 27 25 11 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCACAAGTTTTACTTAAAGTGC</pcr_primer_p1>
		<pcr_primer_p2>GAATCAATTCTCTTGTGTGTTG</pcr_primer_p2>
		<pcr_amplicon_size>505</pcr_amplicon_size>
		<canonical_amplicon>TTTCACAAGTTTTACTTAAAGTGCCGCATTTTGACTATTTTTAGAAGCTCAATTGTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAATTAAAAAAAACAACACACAAGAGAATTGATTC</canonical_amplicon>
		<polymorphic_amplicon>TTTCACAAGTTTTACTTAAAGTGCCGCATTTTGACTATTTTTAGAAGCTCAATTGTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAWTTTCAAACTTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAATTAAAAAAAACAACACACAAGAGAATTGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9643</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>60703</contig_pos>
        <strand>+</strand>
        <context>tACTAAATTG[A/T]AAWTTTCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTG</left_flank>
        <right_flank>AAATTTCAAACTTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATTGATGTGTCTGGCAGTATGTATACTGTAGGCTTTTGTTTTCACAGGAAAAATAAAGATAAAAGAGATAAAGTTAATTTCACAAGTTTTACTTAAAGTGCCGCATTTTGACTATTTTTAGAAGCTCAATTGTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAATTAAAAAAAACAACACACAAGAGAATTGATTCAACTTCGAAAACAAACTTTAAAATCTTAGATTTTTCAATTTTCATACGTATCTAAAATATTTATTCACACCTAAACGTTAGAAAATCTTTAAGAAAAAAAATGCAAAAAAATCAACGAAAAACTGTAGAAATTTGGAAAGCAGGAAGAAGTAGAAGTGTATGGACAAACAAATCAGTAGGAGGGCAACCTAAGAAATAGAGGTAGGGAAGAGAAGAGAGATAAAATGTTTTATTTGGGTAACGAGAACTGTAGGACGCAAGCCGAAAGCCGCTTGGCATAAGTGCGTAGGTGCTTTCCTCCTTCCGAGTGGAGCAAACATGAAACAACTTTTTGGCTTCTATATATTTTCTTTTCGTCTCTTTTTCTCCTCTTACAGGTTCACTCTCGTCGTTTTTTTATTGCGCAGTTTTTTTGT</canonical>
            <polymorphic>TGATTGATGTGTCTGGCAGTATGTATACTGTAGGCTTTTGTTTTCACAGGAAAAATAAAGATAAAAGAGATAAAGTTAATTTCACAAGTTTTACTTAAAGTGCCGCATTTTGACTATTTTTAGAAGCTCAATTGTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGWAAATTTCAAACTTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAATTAAAAAAAACAACACACAAGAGAATTGATTCAACTTCGAAAACAAACTTTAAAATCTTAGATTTTTCAATTTTCATACGTATCTAAAATATTTATTCACACCTAAACGTTAGAAAATCTTTAAGAAAAAAAATGCAAAAAAATCAACGAAAAACTGTAGAAATTTGGAAAGCAGGAAGAAGTAGAAGTGTATGGACAAACAAATCAGTAGGAGGGCAACCTAAGAAATAGAGGTAGGGAAGAGAAGAGAGATAAAATGTTTTATTTGGGTAACGAGAACTGTAGGACGCAAGCCGAAAGCCGCTTGGCATAAGTGCGTAGGTGCTTTCCTCCTTCCGAGTGGAGCAAACATGAAACAACTTTTTGGCTTCTATATATTTTCTTTTCGTCTCTTTTTCTCCTCTTACAGGTTCACTCTCGTCGTTTTTTTATTGCGCAGTTTTTTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCACAAGTTTTACTTAAAGTGC</pcr_primer_p1>
		<pcr_primer_p2>GAATCAATTCTCTTGTGTGTTG</pcr_primer_p2>
		<pcr_amplicon_size>505</pcr_amplicon_size>
		<canonical_amplicon>TTTCACAAGTTTTACTTAAAGTGCCGCATTTTGACTATTTTTAGAAGCTCAATTGTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAATTAAAAAAAACAACACACAAGAGAATTGATTC</canonical_amplicon>
		<polymorphic_amplicon>TTTCACAAGTTTTACTTAAAGTGCCGCATTTTGACTATTTTTAGAAGCTCAATTGTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGWAAATTTCAAACTTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAATTAAAAAAAACAACACACAAGAGAATTGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9644</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>60849</contig_pos>
        <strand>+</strand>
        <context>CTAAAATWTT[C/T]ATTCACACCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAACTTTAAAATCTTAGATTTTTCAATTTTCATACGTATCTAAAATATT</left_flank>
        <right_flank>ATTCACACCTAAACGTTAGAAAATCTTTAAGAAAAAAAATGCAAAAAAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAATTAAAAAAAACAACACACAAGAGAATTGATTCAACTTCGAAAACAAACTTTAAAATCTTAGATTTTTCAATTTTCATACGTATCTAAAATATTTATTCACACCTAAACGTTAGAAAATCTTTAAGAAAAAAAATGCAAAAAAATCAACGAAAAACTGTAGAAATTTGGAAAGCAGGAAGAAGTAGAAGTGTATGGACAAACAAATCAGTAGGAGGGCAACCTAAGAAATAGAGGTAGGGAAGAGAAGAGAGATAAAATGTTTTATTTGGGTAACGAGAACTGTAGGACGCAAGCCGAAAGCCGCTTGGCATAAGTGCGTAGGTGCTTTCCTCCTTCCGAGTGGAGCAAACATGAAACAACTTTTTGGCTTCTATATATTTTCTTTTCGTCTCTTTTTCTCCTCTTACAGGTTCACTCTCGTCGTTTTTTTATTGCGCAGTTTTTTTGTCTTGTGTGTCCGTCGTCGCCATCAACTTGAATGCACTAAAGAGCATAGTTACGGAGTACGCCTGTGTACCTCTAAGGCCACGCGCGGATTATCATTTCTTACATGCCGTTTGGAAAAATTGTATTCTCCTTGAAACAGGAAAAATG</canonical>
            <polymorphic>ACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAATTAAAAAAAACAACACACAAGAGAATTGATTCAACTTCGAAAACAAACTTTAAAATCTTAGATTTTTCAATTTTCATACGTATCTAAAATATTYATTCACACCTAAACGTTAGAAAATCTTTAAGAAAAAAAATGCAAAAAAATCAACGAAAAACTGTAGAAATTTGGAAAGCAGGAAGAAGTAGAAGTGTATGGACAAACAAATCAGTAGGAGGGCAACCTAAGAAATAGAGGTAGGGAAGAGAAGAGAGATAAAATGTTTTATTTGGGTAACGAGAACTGTAGGACGCAAGCCGAAAGCCGCTTGGCATAAGTGCGTAGGTGCTTTCCTCCTTCCGAGTGGAGCAAACATGAAACAACTTTTTGGCTTCTATATATTTTCTTTTCGTCTCTTTTTCTCCTCTTACAGGTTCACTCTCGTCGTTTTTTTATTGCGCAGTTTTTTTGTCTTGTGTGTCCGTCGTCGCCATCAACTTGAATGCACTAAAGAGCATAGTTACGGAGTACGCCTGTGTACCTCTAAGGCCACGCGCGGATTATCATTTCTTACATGCCGTTTGGAAAAATTGTATTCTCCTTGAAACAGGAAAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCGAAAGAATACGGTAGTTA</pcr_primer_p1>
		<pcr_primer_p2>ACTGATTTGTTTGTCCATACACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAATTAAAAAAAACAACACACAAGAGAATTGATTCAACTTCGAAAACAAACTTTAAAATCTTAGATTTTTCAATTTTCATACGTATCTAAAATATTTATTCACACCTAAACGTTAGAAAATCTTTAAGAAAAAAAATGCAAAAAAATCAACGAAAAACTGTAGAAATTTGGAAAGCAGGAAGAAGTAGAAGTGTATGGACAAACAAATCAGT</canonical_amplicon>
		<polymorphic_amplicon>TTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAATTAAAAAAAACAACACACAAGAGAATTGATTCAACTTCGAAAACAAACTTTAAAATCTTAGATTTTTCAATTTTCATACGTATCTAAAATATTYATTCACACCTAAACGTTAGAAAATCTTTAAGAAAAAAAATGCAAAAAAATCAACGAAAAACTGTAGAAATTTGGAAAGCAGGAAGAAGTAGAAGTGTATGGACAAACAAATCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9645</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>60846</contig_pos>
        <strand>+</strand>
        <context>YATCTAAAAT[A/T]TTYATTCACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAACAAACTTTAAAATCTTAGATTTTTCAATTTTCATACGTATCTAAAAT</left_flank>
        <right_flank>TTTATTCACACCTAAACGTTAGAAAATCTTTAAGAAAAAAAATGCAAAAA</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAATTAAAAAAAACAACACACAAGAGAATTGATTCAACTTCGAAAACAAACTTTAAAATCTTAGATTTTTCAATTTTCATACGTATCTAAAATATTTATTCACACCTAAACGTTAGAAAATCTTTAAGAAAAAAAATGCAAAAAAATCAACGAAAAACTGTAGAAATTTGGAAAGCAGGAAGAAGTAGAAGTGTATGGACAAACAAATCAGTAGGAGGGCAACCTAAGAAATAGAGGTAGGGAAGAGAAGAGAGATAAAATGTTTTATTTGGGTAACGAGAACTGTAGGACGCAAGCCGAAAGCCGCTTGGCATAAGTGCGTAGGTGCTTTCCTCCTTCCGAGTGGAGCAAACATGAAACAACTTTTTGGCTTCTATATATTTTCTTTTCGTCTCTTTTTCTCCTCTTACAGGTTCACTCTCGTCGTTTTTTTATTGCGCAGTTTTTTTGTCTTGTGTGTCCGTCGTCGCCATCAACTTGAATGCACTAAAGAGCATAGTTACGGAGTACGCCTGTGTACCTCTAAGGCCACGCGCGGATTATCATTTCTTACATGCCGTTTGGAAAAATTGTATTCTCCTTGAAACAGGAAAA</canonical>
            <polymorphic>CAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAATTAAAAAAAACAACACACAAGAGAATTGATTCAACTTCGAAAACAAACTTTAAAATCTTAGATTTTTCAATTTTCATACGTATCTAAAATWTTTATTCACACCTAAACGTTAGAAAATCTTTAAGAAAAAAAATGCAAAAAAATCAACGAAAAACTGTAGAAATTTGGAAAGCAGGAAGAAGTAGAAGTGTATGGACAAACAAATCAGTAGGAGGGCAACCTAAGAAATAGAGGTAGGGAAGAGAAGAGAGATAAAATGTTTTATTTGGGTAACGAGAACTGTAGGACGCAAGCCGAAAGCCGCTTGGCATAAGTGCGTAGGTGCTTTCCTCCTTCCGAGTGGAGCAAACATGAAACAACTTTTTGGCTTCTATATATTTTCTTTTCGTCTCTTTTTCTCCTCTTACAGGTTCACTCTCGTCGTTTTTTTATTGCGCAGTTTTTTTGTCTTGTGTGTCCGTCGTCGCCATCAACTTGAATGCACTAAAGAGCATAGTTACGGAGTACGCCTGTGTACCTCTAAGGCCACGCGCGGATTATCATTTCTTACATGCCGTTTGGAAAAATTGTATTCTCCTTGAAACAGGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCGAAAGAATACGGTAGTTA</pcr_primer_p1>
		<pcr_primer_p2>ACTGATTTGTTTGTCCATACACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAATTAAAAAAAACAACACACAAGAGAATTGATTCAACTTCGAAAACAAACTTTAAAATCTTAGATTTTTCAATTTTCATACGTATCTAAAATATTTATTCACACCTAAACGTTAGAAAATCTTTAAGAAAAAAAATGCAAAAAAATCAACGAAAAACTGTAGAAATTTGGAAAGCAGGAAGAAGTAGAAGTGTATGGACAAACAAATCAGT</canonical_amplicon>
		<polymorphic_amplicon>TTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAATTAAAAAAAACAACACACAAGAGAATTGATTCAACTTCGAAAACAAACTTTAAAATCTTAGATTTTTCAATTTTCATACGTATCTAAAATWTTTATTCACACCTAAACGTTAGAAAATCTTTAAGAAAAAAAATGCAAAAAAATCAACGAAAAACTGTAGAAATTTGGAAAGCAGGAAGAAGTAGAAGTGTATGGACAAACAAATCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9646</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>60836</contig_pos>
        <strand>+</strand>
        <context>TTTTCATACG[C/T]ATCTAAAATW</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAACTTCGAAAACAAACTTTAAAATCTTAGATTTTTCAATTTTCATACG</left_flank>
        <right_flank>ATCTAAAATATTTATTCACACCTAAACGTTAGAAAATCTTTAAGAAAAAA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAATTAAAAAAAACAACACACAAGAGAATTGATTCAACTTCGAAAACAAACTTTAAAATCTTAGATTTTTCAATTTTCATACGTATCTAAAATATTTATTCACACCTAAACGTTAGAAAATCTTTAAGAAAAAAAATGCAAAAAAATCAACGAAAAACTGTAGAAATTTGGAAAGCAGGAAGAAGTAGAAGTGTATGGACAAACAAATCAGTAGGAGGGCAACCTAAGAAATAGAGGTAGGGAAGAGAAGAGAGATAAAATGTTTTATTTGGGTAACGAGAACTGTAGGACGCAAGCCGAAAGCCGCTTGGCATAAGTGCGTAGGTGCTTTCCTCCTTCCGAGTGGAGCAAACATGAAACAACTTTTTGGCTTCTATATATTTTCTTTTCGTCTCTTTTTCTCCTCTTACAGGTTCACTCTCGTCGTTTTTTTATTGCGCAGTTTTTTTGTCTTGTGTGTCCGTCGTCGCCATCAACTTGAATGCACTAAAGAGCATAGTTACGGAGTACGCCTGTGTACCTCTAAGGCCACGCGCGGATTATCATTTCTTACATGCCGTTTGGAAAAATTGTATTCTCCTTGA</canonical>
            <polymorphic>GTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAATTAAAAAAAACAACACACAAGAGAATTGATTCAACTTCGAAAACAAACTTTAAAATCTTAGATTTTTCAATTTTCATACGYATCTAAAATATTTATTCACACCTAAACGTTAGAAAATCTTTAAGAAAAAAAATGCAAAAAAATCAACGAAAAACTGTAGAAATTTGGAAAGCAGGAAGAAGTAGAAGTGTATGGACAAACAAATCAGTAGGAGGGCAACCTAAGAAATAGAGGTAGGGAAGAGAAGAGAGATAAAATGTTTTATTTGGGTAACGAGAACTGTAGGACGCAAGCCGAAAGCCGCTTGGCATAAGTGCGTAGGTGCTTTCCTCCTTCCGAGTGGAGCAAACATGAAACAACTTTTTGGCTTCTATATATTTTCTTTTCGTCTCTTTTTCTCCTCTTACAGGTTCACTCTCGTCGTTTTTTTATTGCGCAGTTTTTTTGTCTTGTGTGTCCGTCGTCGCCATCAACTTGAATGCACTAAAGAGCATAGTTACGGAGTACGCCTGTGTACCTCTAAGGCCACGCGCGGATTATCATTTCTTACATGCCGTTTGGAAAAATTGTATTCTCCTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TACGTA</site>
                <isoschizomers>
                    <enzyme>BstSNI</enzyme>
                    <enzyme>Eco105I</enzyme>
                    <enzyme>SnaBI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>497 474 29</canonical_bands>
                <polymorphic_bands>526 474</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCGAAAGAATACGGTAGTTA</pcr_primer_p1>
		<pcr_primer_p2>ACTGATTTGTTTGTCCATACACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAATTAAAAAAAACAACACACAAGAGAATTGATTCAACTTCGAAAACAAACTTTAAAATCTTAGATTTTTCAATTTTCATACGTATCTAAAATATTTATTCACACCTAAACGTTAGAAAATCTTTAAGAAAAAAAATGCAAAAAAATCAACGAAAAACTGTAGAAATTTGGAAAGCAGGAAGAAGTAGAAGTGTATGGACAAACAAATCAGT</canonical_amplicon>
		<polymorphic_amplicon>TTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAATTAAAAAAAACAACACACAAGAGAATTGATTCAACTTCGAAAACAAACTTTAAAATCTTAGATTTTTCAATTTTCATACGYATCTAAAATATTTATTCACACCTAAACGTTAGAAAATCTTTAAGAAAAAAAATGCAAAAAAATCAACGAAAAACTGTAGAAATTTGGAAAGCAGGAAGAAGTAGAAGTGTATGGACAAACAAATCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9647</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>165821</contig_pos>
        <strand>+</strand>
        <context>ATATCAAAAT[G/T]KCATGGGAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGTCTCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAAT</left_flank>
        <right_flank>TCATGGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTAGGAGAGGAGGGAAGGGGGGGGGTACTGTAATGAGTCACTTGACGGCTGCAAATTTTGCAGATTCGGATACAGTATCCCTATAGAGCAGAATTCCTCCAGCAGGAAGTGGGACAGCATTATGTTAGGGAGACAGTTTAGTGGTTGGGAGATTCTATTTTTACTACATATGTACATCTCTAGTAAAATGATAATGCTCTTGGCGAATTCCAAAATCGGCCACAAGTCCAATTAGCGGGCGATTATTATTGGAAGCGTTACAGTAAAAAAAACGAATGAGCATCTGGTTTTGTTGTAGATATCGGAAGCTCACTCTCAAACACTTTTTCCACCATCAAACTCTGGCTACTCTCGGCAACCGCAGAAAAAAATGGGCGCCACCTAGTCTTTTTGTTTGTTTTACCGTAAAGGAGATATTTTTGAAGATAATCGAAAAGATGGCAGATGGTGTCTCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATTTCATGGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAACGTACCTCGGAGTTCGCTCTCTGGGTTTACAAAATTTCATTAAGCGATAGTCTGTTGCTGTTCAAAAAGTATGAGATATAGTGATACCAGACCGAGAAGGATGTGAAAAAGGTGTAGTTTAGTTTTCGATCTTTCAGAGATATGATGCAGGTGGTGGAAACCGTGTTCTTTTCTAGACTCTTACTCGTTTCTGCCAACAGGCGACACGGACCTGTGTTTTCTCGGGAGAGGGGGGGGGGGCGAAC</canonical>
            <polymorphic>TGGTAGGAGAGGAGGGAAGGGGGGGGGTACTGTAATGAGTCACTTGACGGCTGCAAATTTTGCAGATTCGGATACAGTATCCCTATAGAGCAGAATTCCTCCAGCAGGAAGTGGGACAGCATTATGTTAGGGAGACAGTTTAGTGGTTGGGAGATTCTATTTTTACTACATATGTACATCTCTAGTAAAATGATAATGCTCTTGGCGAATTCCAAAATCGGCCACAAGTCCAATTAGCGGGCGATTATTATTGGAAGCGTTACAGTAAAAAAAACGAATGAGCATCTGGTTTTGTTGTAGATATCGGAAGCTCACTCTCAAACACTTTTTCCACCATCAAACTCTGGCTACTCTCGGCAACCGCAGAAAAAAATGGGCGCCACCTAGTCTTTTTGTTTGTTTTACCGTAAAGGAGATATTTTTGAAGATAATCGAAAAGATGGCAGATGGTGTCTCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATKTCATGGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAACGTACCTCGGAGTTCGCTCTCTGGGTTTACAAAATTTCATTAAGCGATAGTCTGTTGCTGTTCAAAAAGTATGAGATATAGTGATACCAGACCGAGAAGGATGTGAAAAAGGTGTAGTTTAGTTTTCGATCTTTCAGAGATATGATGCAGGTGGTGGAAACCGTGTTCTTTTCTAGACTCTTACTCGTTTCTGCCAACAGGCGACACGGACCTGTGTTTTCTCGGGAGAGGGGGGGGGGGCGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>289 213 154 114 87 55 50 38</canonical_bands>
                <polymorphic_bands>443 213 114 87 55 50 38</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>265 213 154 114 87 55 50 38 24</canonical_bands>
                <polymorphic_bands>419 213 114 87 55 50 38 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAAGATAATCGAAAAGATG</pcr_primer_p1>
		<pcr_primer_p2>CTTCTGGAATTCTAAGATACATGA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAAGATAATCGAAAAGATGGCAGATGGTGTCTCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATTTCATGGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAAGATAATCGAAAAGATGGCAGATGGTGTCTCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATKTCATGGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9648</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>165822</contig_pos>
        <strand>+</strand>
        <context>TATCAAAATK[G/T]CATGGGAGCC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTCTCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATT</left_flank>
        <right_flank>CATGGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTAGGAGAGGAGGGAAGGGGGGGGGTACTGTAATGAGTCACTTGACGGCTGCAAATTTTGCAGATTCGGATACAGTATCCCTATAGAGCAGAATTCCTCCAGCAGGAAGTGGGACAGCATTATGTTAGGGAGACAGTTTAGTGGTTGGGAGATTCTATTTTTACTACATATGTACATCTCTAGTAAAATGATAATGCTCTTGGCGAATTCCAAAATCGGCCACAAGTCCAATTAGCGGGCGATTATTATTGGAAGCGTTACAGTAAAAAAAACGAATGAGCATCTGGTTTTGTTGTAGATATCGGAAGCTCACTCTCAAACACTTTTTCCACCATCAAACTCTGGCTACTCTCGGCAACCGCAGAAAAAAATGGGCGCCACCTAGTCTTTTTGTTTGTTTTACCGTAAAGGAGATATTTTTGAAGATAATCGAAAAGATGGCAGATGGTGTCTCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATTTCATGGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAACGTACCTCGGAGTTCGCTCTCTGGGTTTACAAAATTTCATTAAGCGATAGTCTGTTGCTGTTCAAAAAGTATGAGATATAGTGATACCAGACCGAGAAGGATGTGAAAAAGGTGTAGTTTAGTTTTCGATCTTTCAGAGATATGATGCAGGTGGTGGAAACCGTGTTCTTTTCTAGACTCTTACTCGTTTCTGCCAACAGGCGACACGGACCTGTGTTTTCTCGGGAGAGGGGGGGGGGGCGAACA</canonical>
            <polymorphic>GGTAGGAGAGGAGGGAAGGGGGGGGGTACTGTAATGAGTCACTTGACGGCTGCAAATTTTGCAGATTCGGATACAGTATCCCTATAGAGCAGAATTCCTCCAGCAGGAAGTGGGACAGCATTATGTTAGGGAGACAGTTTAGTGGTTGGGAGATTCTATTTTTACTACATATGTACATCTCTAGTAAAATGATAATGCTCTTGGCGAATTCCAAAATCGGCCACAAGTCCAATTAGCGGGCGATTATTATTGGAAGCGTTACAGTAAAAAAAACGAATGAGCATCTGGTTTTGTTGTAGATATCGGAAGCTCACTCTCAAACACTTTTTCCACCATCAAACTCTGGCTACTCTCGGCAACCGCAGAAAAAAATGGGCGCCACCTAGTCTTTTTGTTTGTTTTACCGTAAAGGAGATATTTTTGAAGATAATCGAAAAGATGGCAGATGGTGTCTCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATTKCATGGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAACGTACCTCGGAGTTCGCTCTCTGGGTTTACAAAATTTCATTAAGCGATAGTCTGTTGCTGTTCAAAAAGTATGAGATATAGTGATACCAGACCGAGAAGGATGTGAAAAAGGTGTAGTTTAGTTTTCGATCTTTCAGAGATATGATGCAGGTGGTGGAAACCGTGTTCTTTTCTAGACTCTTACTCGTTTCTGCCAACAGGCGACACGGACCTGTGTTTTCTCGGGAGAGGGGGGGGGGGCGAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>289 214 154 114 87 54 50 38</canonical_bands>
                <polymorphic_bands>443 214 114 87 54 50 38</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAAGATAATCGAAAAGATG</pcr_primer_p1>
		<pcr_primer_p2>CTTCTGGAATTCTAAGATACATGA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAAGATAATCGAAAAGATGGCAGATGGTGTCTCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATTTCATGGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAAGATAATCGAAAAGATGGCAGATGGTGTCTCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATTKCATGGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9649</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>165872</contig_pos>
        <strand></strand>
        <context>AAAGTGGAAG[A/T]AAAKAGAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCATGGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAG</left_flank>
        <right_flank>AAAGAGAACACTACTTTCCCACATGTTTTCCTCTTCCAACTAGAAAAATC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCAAATTTTGCAGATTCGGATACAGTATCCCTATAGAGCAGAATTCCTCCAGCAGGAAGTGGGACAGCATTATGTTAGGGAGACAGTTTAGTGGTTGGGAGATTCTATTTTTACTACATATGTACATCTCTAGTAAAATGATAATGCTCTTGGCGAATTCCAAAATCGGCCACAAGTCCAATTAGCGGGCGATTATTATTGGAAGCGTTACAGTAAAAAAAACGAATGAGCATCTGGTTTTGTTGTAGATATCGGAAGCTCACTCTCAAACACTTTTTCCACCATCAAACTCTGGCTACTCTCGGCAACCGCAGAAAAAAATGGGCGCCACCTAGTCTTTTTGTTTGTTTTACCGTAAAGGAGATATTTTTGAAGATAATCGAAAAGATGGCAGATGGTGTCTCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATTTCATGGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAACGTACCTCGGAGTTCGCTCTCTGGGTTTACAAAATTTCATTAAGCGATAGTCTGTTGCTGTTCAAAAAGTATGAGATATAGTGATACCAGACCGAGAAGGATGTGAAAAAGGTGTAGTTTAGTTTTCGATCTTTCAGAGATATGATGCAGGTGGTGGAAACCGTGTTCTTTTCTAGACTCTTACTCGTTTCTGCCAACAGGCGACACGGACCTGTGTTTTCTCGGGAGAGGGGGGGGGGGCGAACAGAAAAGAGAGAAGCGATGTCGATGATCTCGTGGTATGGAAATGAGTCAAA</canonical>
            <polymorphic>TGCAAATTTTGCAGATTCGGATACAGTATCCCTATAGAGCAGAATTCCTCCAGCAGGAAGTGGGACAGCATTATGTTAGGGAGACAGTTTAGTGGTTGGGAGATTCTATTTTTACTACATATGTACATCTCTAGTAAAATGATAATGCTCTTGGCGAATTCCAAAATCGGCCACAAGTCCAATTAGCGGGCGATTATTATTGGAAGCGTTACAGTAAAAAAAACGAATGAGCATCTGGTTTTGTTGTAGATATCGGAAGCTCACTCTCAAACACTTTTTCCACCATCAAACTCTGGCTACTCTCGGCAACCGCAGAAAAAAATGGGCGCCACCTAGTCTTTTTGTTTGTTTTACCGTAAAGGAGATATTTTTGAAGATAATCGAAAAGATGGCAGATGGTGTCTCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATTTCATGGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGWAAAGAGAACACTACTTTCCCACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAACGTACCTCGGAGTTCGCTCTCTGGGTTTACAAAATTTCATTAAGCGATAGTCTGTTGCTGTTCAAAAAGTATGAGATATAGTGATACCAGACCGAGAAGGATGTGAAAAAGGTGTAGTTTAGTTTTCGATCTTTCAGAGATATGATGCAGGTGGTGGAAACCGTGTTCTTTTCTAGACTCTTACTCGTTTCTGCCAACAGGCGACACGGACCTGTGTTTTCTCGGGAGAGGGGGGGGGGGCGAACAGAAAAGAGAGAAGCGATGTCGATGATCTCGTGGTATGGAAATGAGTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAAGATAATCGAAAAGATG</pcr_primer_p1>
		<pcr_primer_p2>CTTCTGGAATTCTAAGATACATGA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAAGATAATCGAAAAGATGGCAGATGGTGTCTCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATTTCATGGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAAGATAATCGAAAAGATGGCAGATGGTGTCTCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATTTCATGGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGWAAAGAGAACACTACTTTCCCACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9650</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>165876</contig_pos>
        <strand></strand>
        <context>TGGAAGWAAA[G/T]AGAACACTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAA</left_flank>
        <right_flank>AGAACACTACTTTCCCACATGTTTTCCTCTTCCAACTAGAAAAATCAGAC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTGCAGATTCGGATACAGTATCCCTATAGAGCAGAATTCCTCCAGCAGGAAGTGGGACAGCATTATGTTAGGGAGACAGTTTAGTGGTTGGGAGATTCTATTTTTACTACATATGTACATCTCTAGTAAAATGATAATGCTCTTGGCGAATTCCAAAATCGGCCACAAGTCCAATTAGCGGGCGATTATTATTGGAAGCGTTACAGTAAAAAAAACGAATGAGCATCTGGTTTTGTTGTAGATATCGGAAGCTCACTCTCAAACACTTTTTCCACCATCAAACTCTGGCTACTCTCGGCAACCGCAGAAAAAAATGGGCGCCACCTAGTCTTTTTGTTTGTTTTACCGTAAAGGAGATATTTTTGAAGATAATCGAAAAGATGGCAGATGGTGTCTCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATTTCATGGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAACGTACCTCGGAGTTCGCTCTCTGGGTTTACAAAATTTCATTAAGCGATAGTCTGTTGCTGTTCAAAAAGTATGAGATATAGTGATACCAGACCGAGAAGGATGTGAAAAAGGTGTAGTTTAGTTTTCGATCTTTCAGAGATATGATGCAGGTGGTGGAAACCGTGTTCTTTTCTAGACTCTTACTCGTTTCTGCCAACAGGCGACACGGACCTGTGTTTTCTCGGGAGAGGGGGGGGGGGCGAACAGAAAAGAGAGAAGCGATGTCGATGATCTCGTGGTATGGAAATGAGTCAAAATAA</canonical>
            <polymorphic>AATTTTGCAGATTCGGATACAGTATCCCTATAGAGCAGAATTCCTCCAGCAGGAAGTGGGACAGCATTATGTTAGGGAGACAGTTTAGTGGTTGGGAGATTCTATTTTTACTACATATGTACATCTCTAGTAAAATGATAATGCTCTTGGCGAATTCCAAAATCGGCCACAAGTCCAATTAGCGGGCGATTATTATTGGAAGCGTTACAGTAAAAAAAACGAATGAGCATCTGGTTTTGTTGTAGATATCGGAAGCTCACTCTCAAACACTTTTTCCACCATCAAACTCTGGCTACTCTCGGCAACCGCAGAAAAAAATGGGCGCCACCTAGTCTTTTTGTTTGTTTTACCGTAAAGGAGATATTTTTGAAGATAATCGAAAAGATGGCAGATGGTGTCTCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATTTCATGGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAKAGAACACTACTTTCCCACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAACGTACCTCGGAGTTCGCTCTCTGGGTTTACAAAATTTCATTAAGCGATAGTCTGTTGCTGTTCAAAAAGTATGAGATATAGTGATACCAGACCGAGAAGGATGTGAAAAAGGTGTAGTTTAGTTTTCGATCTTTCAGAGATATGATGCAGGTGGTGGAAACCGTGTTCTTTTCTAGACTCTTACTCGTTTCTGCCAACAGGCGACACGGACCTGTGTTTTCTCGGGAGAGGGGGGGGGGGCGAACAGAAAAGAGAGAAGCGATGTCGATGATCTCGTGGTATGGAAATGAGTCAAAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGAGCCTTACACAGATTATT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCGTGAAGTTTTGAGTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAKAGAACACTACTTTCCCACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9651</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>165892</contig_pos>
        <strand>+</strand>
        <context>ACTACTTTCC[A/C]ACATKTWTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCC</left_flank>
        <right_flank>ACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATACAGTATCCCTATAGAGCAGAATTCCTCCAGCAGGAAGTGGGACAGCATTATGTTAGGGAGACAGTTTAGTGGTTGGGAGATTCTATTTTTACTACATATGTACATCTCTAGTAAAATGATAATGCTCTTGGCGAATTCCAAAATCGGCCACAAGTCCAATTAGCGGGCGATTATTATTGGAAGCGTTACAGTAAAAAAAACGAATGAGCATCTGGTTTTGTTGTAGATATCGGAAGCTCACTCTCAAACACTTTTTCCACCATCAAACTCTGGCTACTCTCGGCAACCGCAGAAAAAAATGGGCGCCACCTAGTCTTTTTGTTTGTTTTACCGTAAAGGAGATATTTTTGAAGATAATCGAAAAGATGGCAGATGGTGTCTCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATTTCATGGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAACGTACCTCGGAGTTCGCTCTCTGGGTTTACAAAATTTCATTAAGCGATAGTCTGTTGCTGTTCAAAAAGTATGAGATATAGTGATACCAGACCGAGAAGGATGTGAAAAAGGTGTAGTTTAGTTTTCGATCTTTCAGAGATATGATGCAGGTGGTGGAAACCGTGTTCTTTTCTAGACTCTTACTCGTTTCTGCCAACAGGCGACACGGACCTGTGTTTTCTCGGGAGAGGGGGGGGGGGCGAACAGAAAAGAGAGAAGCGATGTCGATGATCTCGTGGTATGGAAATGAGTCAAAATAACTGTGGGGTGAGAGAT</canonical>
            <polymorphic>ATACAGTATCCCTATAGAGCAGAATTCCTCCAGCAGGAAGTGGGACAGCATTATGTTAGGGAGACAGTTTAGTGGTTGGGAGATTCTATTTTTACTACATATGTACATCTCTAGTAAAATGATAATGCTCTTGGCGAATTCCAAAATCGGCCACAAGTCCAATTAGCGGGCGATTATTATTGGAAGCGTTACAGTAAAAAAAACGAATGAGCATCTGGTTTTGTTGTAGATATCGGAAGCTCACTCTCAAACACTTTTTCCACCATCAAACTCTGGCTACTCTCGGCAACCGCAGAAAAAAATGGGCGCCACCTAGTCTTTTTGTTTGTTTTACCGTAAAGGAGATATTTTTGAAGATAATCGAAAAGATGGCAGATGGTGTCTCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATTTCATGGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCMACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAACGTACCTCGGAGTTCGCTCTCTGGGTTTACAAAATTTCATTAAGCGATAGTCTGTTGCTGTTCAAAAAGTATGAGATATAGTGATACCAGACCGAGAAGGATGTGAAAAAGGTGTAGTTTAGTTTTCGATCTTTCAGAGATATGATGCAGGTGGTGGAAACCGTGTTCTTTTCTAGACTCTTACTCGTTTCTGCCAACAGGCGACACGGACCTGTGTTTTCTCGGGAGAGGGGGGGGGGGCGAACAGAAAAGAGAGAAGCGATGTCGATGATCTCGTGGTATGGAAATGAGTCAAAATAACTGTGGGGTGAGAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>103 90 89 79 70 62 49 49 48 42 41 39 32 30 27 25 22 15 11 11 10 10 9 9 9 6 5 5 3</canonical_bands>
                <polymorphic_bands>114 90 89 79 70 62 49 49 48 42 41 39 32 30 27 25 22 15 11 10 10 9 9 9 6 5 5 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACAGATTATTGGAAGAAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCGTGAAGTTTTGAGTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAA</canonical_amplicon>
		<polymorphic_amplicon>CACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCMACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9652</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>165897</contig_pos>
        <strand></strand>
        <context>TTTCCMACAT[G/T]TWTTCCTCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACAT</left_flank>
        <right_flank>TTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATCCCTATAGAGCAGAATTCCTCCAGCAGGAAGTGGGACAGCATTATGTTAGGGAGACAGTTTAGTGGTTGGGAGATTCTATTTTTACTACATATGTACATCTCTAGTAAAATGATAATGCTCTTGGCGAATTCCAAAATCGGCCACAAGTCCAATTAGCGGGCGATTATTATTGGAAGCGTTACAGTAAAAAAAACGAATGAGCATCTGGTTTTGTTGTAGATATCGGAAGCTCACTCTCAAACACTTTTTCCACCATCAAACTCTGGCTACTCTCGGCAACCGCAGAAAAAAATGGGCGCCACCTAGTCTTTTTGTTTGTTTTACCGTAAAGGAGATATTTTTGAAGATAATCGAAAAGATGGCAGATGGTGTCTCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATTTCATGGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAACGTACCTCGGAGTTCGCTCTCTGGGTTTACAAAATTTCATTAAGCGATAGTCTGTTGCTGTTCAAAAAGTATGAGATATAGTGATACCAGACCGAGAAGGATGTGAAAAAGGTGTAGTTTAGTTTTCGATCTTTCAGAGATATGATGCAGGTGGTGGAAACCGTGTTCTTTTCTAGACTCTTACTCGTTTCTGCCAACAGGCGACACGGACCTGTGTTTTCTCGGGAGAGGGGGGGGGGGCGAACAGAAAAGAGAGAAGCGATGTCGATGATCTCGTGGTATGGAAATGAGTCAAAATAACTGTGGGGTGAGAGATCGAGA</canonical>
            <polymorphic>GTATCCCTATAGAGCAGAATTCCTCCAGCAGGAAGTGGGACAGCATTATGTTAGGGAGACAGTTTAGTGGTTGGGAGATTCTATTTTTACTACATATGTACATCTCTAGTAAAATGATAATGCTCTTGGCGAATTCCAAAATCGGCCACAAGTCCAATTAGCGGGCGATTATTATTGGAAGCGTTACAGTAAAAAAAACGAATGAGCATCTGGTTTTGTTGTAGATATCGGAAGCTCACTCTCAAACACTTTTTCCACCATCAAACTCTGGCTACTCTCGGCAACCGCAGAAAAAAATGGGCGCCACCTAGTCTTTTTGTTTGTTTTACCGTAAAGGAGATATTTTTGAAGATAATCGAAAAGATGGCAGATGGTGTCTCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATTTCATGGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATKTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAACGTACCTCGGAGTTCGCTCTCTGGGTTTACAAAATTTCATTAAGCGATAGTCTGTTGCTGTTCAAAAAGTATGAGATATAGTGATACCAGACCGAGAAGGATGTGAAAAAGGTGTAGTTTAGTTTTCGATCTTTCAGAGATATGATGCAGGTGGTGGAAACCGTGTTCTTTTCTAGACTCTTACTCGTTTCTGCCAACAGGCGACACGGACCTGTGTTTTCTCGGGAGAGGGGGGGGGGGCGAACAGAAAAGAGAGAAGCGATGTCGATGATCTCGTGGTATGGAAATGAGTCAAAATAACTGTGGGGTGAGAGATCGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>437 426 71 66</canonical_bands>
                <polymorphic_bands>437 426 137</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACAGATTATTGGAAGAAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCGTGAAGTTTTGAGTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAA</canonical_amplicon>
		<polymorphic_amplicon>CACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATKTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9653</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>165899</contig_pos>
        <strand>+</strand>
        <context>TCCMACATKT[A/T]TTCCTCTTCM</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATGT</left_flank>
        <right_flank>TTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCCTATAGAGCAGAATTCCTCCAGCAGGAAGTGGGACAGCATTATGTTAGGGAGACAGTTTAGTGGTTGGGAGATTCTATTTTTACTACATATGTACATCTCTAGTAAAATGATAATGCTCTTGGCGAATTCCAAAATCGGCCACAAGTCCAATTAGCGGGCGATTATTATTGGAAGCGTTACAGTAAAAAAAACGAATGAGCATCTGGTTTTGTTGTAGATATCGGAAGCTCACTCTCAAACACTTTTTCCACCATCAAACTCTGGCTACTCTCGGCAACCGCAGAAAAAAATGGGCGCCACCTAGTCTTTTTGTTTGTTTTACCGTAAAGGAGATATTTTTGAAGATAATCGAAAAGATGGCAGATGGTGTCTCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATTTCATGGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAACGTACCTCGGAGTTCGCTCTCTGGGTTTACAAAATTTCATTAAGCGATAGTCTGTTGCTGTTCAAAAAGTATGAGATATAGTGATACCAGACCGAGAAGGATGTGAAAAAGGTGTAGTTTAGTTTTCGATCTTTCAGAGATATGATGCAGGTGGTGGAAACCGTGTTCTTTTCTAGACTCTTACTCGTTTCTGCCAACAGGCGACACGGACCTGTGTTTTCTCGGGAGAGGGGGGGGGGGCGAACAGAAAAGAGAGAAGCGATGTCGATGATCTCGTGGTATGGAAATGAGTCAAAATAACTGTGGGGTGAGAGATCGAGAGA</canonical>
            <polymorphic>ATCCCTATAGAGCAGAATTCCTCCAGCAGGAAGTGGGACAGCATTATGTTAGGGAGACAGTTTAGTGGTTGGGAGATTCTATTTTTACTACATATGTACATCTCTAGTAAAATGATAATGCTCTTGGCGAATTCCAAAATCGGCCACAAGTCCAATTAGCGGGCGATTATTATTGGAAGCGTTACAGTAAAAAAAACGAATGAGCATCTGGTTTTGTTGTAGATATCGGAAGCTCACTCTCAAACACTTTTTCCACCATCAAACTCTGGCTACTCTCGGCAACCGCAGAAAAAAATGGGCGCCACCTAGTCTTTTTGTTTGTTTTACCGTAAAGGAGATATTTTTGAAGATAATCGAAAAGATGGCAGATGGTGTCTCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATTTCATGGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATGTWTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAACGTACCTCGGAGTTCGCTCTCTGGGTTTACAAAATTTCATTAAGCGATAGTCTGTTGCTGTTCAAAAAGTATGAGATATAGTGATACCAGACCGAGAAGGATGTGAAAAAGGTGTAGTTTAGTTTTCGATCTTTCAGAGATATGATGCAGGTGGTGGAAACCGTGTTCTTTTCTAGACTCTTACTCGTTTCTGCCAACAGGCGACACGGACCTGTGTTTTCTCGGGAGAGGGGGGGGGGGCGAACAGAAAAGAGAGAAGCGATGTCGATGATCTCGTGGTATGGAAATGAGTCAAAATAACTGTGGGGTGAGAGATCGAGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAGATTATTGGAAGAAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCGTGAAGTTTTGAGTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAA</canonical_amplicon>
		<polymorphic_amplicon>CACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATGTWTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9655</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>165909</contig_pos>
        <strand>+</strand>
        <context>WTTCCTCTTC[A/C]AACTAGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATGTTTTCCTCTTC</left_flank>
        <right_flank>AACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCAGAATTCCTCCAGCAGGAAGTGGGACAGCATTATGTTAGGGAGACAGTTTAGTGGTTGGGAGATTCTATTTTTACTACATATGTACATCTCTAGTAAAATGATAATGCTCTTGGCGAATTCCAAAATCGGCCACAAGTCCAATTAGCGGGCGATTATTATTGGAAGCGTTACAGTAAAAAAAACGAATGAGCATCTGGTTTTGTTGTAGATATCGGAAGCTCACTCTCAAACACTTTTTCCACCATCAAACTCTGGCTACTCTCGGCAACCGCAGAAAAAAATGGGCGCCACCTAGTCTTTTTGTTTGTTTTACCGTAAAGGAGATATTTTTGAAGATAATCGAAAAGATGGCAGATGGTGTCTCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATTTCATGGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAACGTACCTCGGAGTTCGCTCTCTGGGTTTACAAAATTTCATTAAGCGATAGTCTGTTGCTGTTCAAAAAGTATGAGATATAGTGATACCAGACCGAGAAGGATGTGAAAAAGGTGTAGTTTAGTTTTCGATCTTTCAGAGATATGATGCAGGTGGTGGAAACCGTGTTCTTTTCTAGACTCTTACTCGTTTCTGCCAACAGGCGACACGGACCTGTGTTTTCTCGGGAGAGGGGGGGGGGGCGAACAGAAAAGAGAGAAGCGATGTCGATGATCTCGTGGTATGGAAATGAGTCAAAATAACTGTGGGGTGAGAGATCGAGAGACATAGGAAGT</canonical>
            <polymorphic>AGCAGAATTCCTCCAGCAGGAAGTGGGACAGCATTATGTTAGGGAGACAGTTTAGTGGTTGGGAGATTCTATTTTTACTACATATGTACATCTCTAGTAAAATGATAATGCTCTTGGCGAATTCCAAAATCGGCCACAAGTCCAATTAGCGGGCGATTATTATTGGAAGCGTTACAGTAAAAAAAACGAATGAGCATCTGGTTTTGTTGTAGATATCGGAAGCTCACTCTCAAACACTTTTTCCACCATCAAACTCTGGCTACTCTCGGCAACCGCAGAAAAAAATGGGCGCCACCTAGTCTTTTTGTTTGTTTTACCGTAAAGGAGATATTTTTGAAGATAATCGAAAAGATGGCAGATGGTGTCTCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATTTCATGGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATGTTTTCCTCTTCMAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAACGTACCTCGGAGTTCGCTCTCTGGGTTTACAAAATTTCATTAAGCGATAGTCTGTTGCTGTTCAAAAAGTATGAGATATAGTGATACCAGACCGAGAAGGATGTGAAAAAGGTGTAGTTTAGTTTTCGATCTTTCAGAGATATGATGCAGGTGGTGGAAACCGTGTTCTTTTCTAGACTCTTACTCGTTTCTGCCAACAGGCGACACGGACCTGTGTTTTCTCGGGAGAGGGGGGGGGGGCGAACAGAAAAGAGAGAAGCGATGTCGATGATCTCGTGGTATGGAAATGAGTCAAAATAACTGTGGGGTGAGAGATCGAGAGACATAGGAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAGATTATTGGAAGAAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCGTGAAGTTTTGAGTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAA</canonical_amplicon>
		<polymorphic_amplicon>CACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATGTTTTCCTCTTCMAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9656</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>166046</contig_pos>
        <strand>+</strand>
        <context>ATTACGATAT[A/C]CCCGACTAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATAT</left_flank>
        <right_flank>CCCGACTAACTACTCAAAACTTCACGAAAACGTACCTCGGAGTTCGCTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTCCAATTAGCGGGCGATTATTATTGGAAGCGTTACAGTAAAAAAAACGAATGAGCATCTGGTTTTGTTGTAGATATCGGAAGCTCACTCTCAAACACTTTTTCCACCATCAAACTCTGGCTACTCTCGGCAACCGCAGAAAAAAATGGGCGCCACCTAGTCTTTTTGTTTGTTTTACCGTAAAGGAGATATTTTTGAAGATAATCGAAAAGATGGCAGATGGTGTCTCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATTTCATGGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAACGTACCTCGGAGTTCGCTCTCTGGGTTTACAAAATTTCATTAAGCGATAGTCTGTTGCTGTTCAAAAAGTATGAGATATAGTGATACCAGACCGAGAAGGATGTGAAAAAGGTGTAGTTTAGTTTTCGATCTTTCAGAGATATGATGCAGGTGGTGGAAACCGTGTTCTTTTCTAGACTCTTACTCGTTTCTGCCAACAGGCGACACGGACCTGTGTTTTCTCGGGAGAGGGGGGGGGGGCGAACAGAAAAGAGAGAAGCGATGTCGATGATCTCGTGGTATGGAAATGAGTCAAAATAACTGTGGGGTGAGAGATCGAGAGACATAGGAAGTGGGCGGGGTCTTATATTTTTCCTCTCTCCCTCGCAAAACAGCCAGGTTGCCAGATGTAGCTGGTGTGTTAAACAGTACCAACATTATACTCAAAATAAATCTGAGCTATGCTGGTTCATGGAAGTTAATGAGAAGTT</canonical>
            <polymorphic>AAGTCCAATTAGCGGGCGATTATTATTGGAAGCGTTACAGTAAAAAAAACGAATGAGCATCTGGTTTTGTTGTAGATATCGGAAGCTCACTCTCAAACACTTTTTCCACCATCAAACTCTGGCTACTCTCGGCAACCGCAGAAAAAAATGGGCGCCACCTAGTCTTTTTGTTTGTTTTACCGTAAAGGAGATATTTTTGAAGATAATCGAAAAGATGGCAGATGGTGTCTCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATTTCATGGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATMCCCGACTAACTACTCAAAACTTCACGAAAACGTACCTCGGAGTTCGCTCTCTGGGTTTACAAAATTTCATTAAGCGATAGTCTGTTGCTGTTCAAAAAGTATGAGATATAGTGATACCAGACCGAGAAGGATGTGAAAAAGGTGTAGTTTAGTTTTCGATCTTTCAGAGATATGATGCAGGTGGTGGAAACCGTGTTCTTTTCTAGACTCTTACTCGTTTCTGCCAACAGGCGACACGGACCTGTGTTTTCTCGGGAGAGGGGGGGGGGGCGAACAGAAAAGAGAGAAGCGATGTCGATGATCTCGTGGTATGGAAATGAGTCAAAATAACTGTGGGGTGAGAGATCGAGAGACATAGGAAGTGGGCGGGGTCTTATATTTTTCCTCTCTCCCTCGCAAAACAGCCAGGTTGCCAGATGTAGCTGGTGTGTTAAACAGTACCAACATTATACTCAAAATAAATCTGAGCTATGCTGGTTCATGGAAGTTAATGAGAAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTAGAATTCCAGAAGTAATGAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCTCTGAAAGATCGAAAACTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAACGTACCTCGGAGTTCGCTCTCTGGGTTTACAAAATTTCATTAAGCGATAGTCTGTTGCTGTTCAAAAAGTATGAGATATAGTGATACCAGACCGAGAAGGATGTGAAAAAGGTGTAGTTTAGTTTTCGATCTTTCAGAGA</canonical_amplicon>
		<polymorphic_amplicon>CTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATMCCCGACTAACTACTCAAAACTTCACGAAAACGTACCTCGGAGTTCGCTCTCTGGGTTTACAAAATTTCATTAAGCGATAGTCTGTTGCTGTTCAAAAAGTATGAGATATAGTGATACCAGACCGAGAAGGATGTGAAAAAGGTGTAGTTTAGTTTTCGATCTTTCAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9657</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>166147</contig_pos>
        <strand>+</strand>
        <context>TTCAAAAAGT[A/G]TGAGAWATAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGGGTTTACAAAATTTCATTAAGCGATAGTCTGTTGCTGTTCAAAAAGT</left_flank>
        <right_flank>TGAGATATAGTGATACCAGACCGAGAAGGATGTGAAAAAGGTGTAGTTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCCACCATCAAACTCTGGCTACTCTCGGCAACCGCAGAAAAAAATGGGCGCCACCTAGTCTTTTTGTTTGTTTTACCGTAAAGGAGATATTTTTGAAGATAATCGAAAAGATGGCAGATGGTGTCTCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATTTCATGGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAACGTACCTCGGAGTTCGCTCTCTGGGTTTACAAAATTTCATTAAGCGATAGTCTGTTGCTGTTCAAAAAGTATGAGATATAGTGATACCAGACCGAGAAGGATGTGAAAAAGGTGTAGTTTAGTTTTCGATCTTTCAGAGATATGATGCAGGTGGTGGAAACCGTGTTCTTTTCTAGACTCTTACTCGTTTCTGCCAACAGGCGACACGGACCTGTGTTTTCTCGGGAGAGGGGGGGGGGGCGAACAGAAAAGAGAGAAGCGATGTCGATGATCTCGTGGTATGGAAATGAGTCAAAATAACTGTGGGGTGAGAGATCGAGAGACATAGGAAGTGGGCGGGGTCTTATATTTTTCCTCTCTCCCTCGCAAAACAGCCAGGTTGCCAGATGTAGCTGGTGTGTTAAACAGTACCAACATTATACTCAAAATAAATCTGAGCTATGCTGGTTCATGGAAGTTAATGAGAAGTTTGAAACCAGAGAAAGGGTAGATGAAAAGAGATGGTGTCCCCTTATACCGGTCTCTTCAAAAGTATTTTTGAAATCAATTGTCATGGGATACCGGAACTTTC</canonical>
            <polymorphic>TTTTCCACCATCAAACTCTGGCTACTCTCGGCAACCGCAGAAAAAAATGGGCGCCACCTAGTCTTTTTGTTTGTTTTACCGTAAAGGAGATATTTTTGAAGATAATCGAAAAGATGGCAGATGGTGTCTCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATTTCATGGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAACGTACCTCGGAGTTCGCTCTCTGGGTTTACAAAATTTCATTAAGCGATAGTCTGTTGCTGTTCAAAAAGTRTGAGATATAGTGATACCAGACCGAGAAGGATGTGAAAAAGGTGTAGTTTAGTTTTCGATCTTTCAGAGATATGATGCAGGTGGTGGAAACCGTGTTCTTTTCTAGACTCTTACTCGTTTCTGCCAACAGGCGACACGGACCTGTGTTTTCTCGGGAGAGGGGGGGGGGGCGAACAGAAAAGAGAGAAGCGATGTCGATGATCTCGTGGTATGGAAATGAGTCAAAATAACTGTGGGGTGAGAGATCGAGAGACATAGGAAGTGGGCGGGGTCTTATATTTTTCCTCTCTCCCTCGCAAAACAGCCAGGTTGCCAGATGTAGCTGGTGTGTTAAACAGTACCAACATTATACTCAAAATAAATCTGAGCTATGCTGGTTCATGGAAGTTAATGAGAAGTTTGAAACCAGAGAAAGGGTAGATGAAAAGAGATGGTGTCCCCTTATACCGGTCTCTTCAAAAGTATTTTTGAAATCAATTGTCATGGGATACCGGAACTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTAGAATTCCAGAAGTAATGAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCTCTGAAAGATCGAAAACTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAACGTACCTCGGAGTTCGCTCTCTGGGTTTACAAAATTTCATTAAGCGATAGTCTGTTGCTGTTCAAAAAGTATGAGATATAGTGATACCAGACCGAGAAGGATGTGAAAAAGGTGTAGTTTAGTTTTCGATCTTTCAGAGA</canonical_amplicon>
		<polymorphic_amplicon>CTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAACGTACCTCGGAGTTCGCTCTCTGGGTTTACAAAATTTCATTAAGCGATAGTCTGTTGCTGTTCAAAAAGTRTGAGATATAGTGATACCAGACCGAGAAGGATGTGAAAAAGGTGTAGTTTAGTTTTCGATCTTTCAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9658</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>166153</contig_pos>
        <strand>+</strand>
        <context>AAGTRTGAGA[A/T]ATAGTGATAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTACAAAATTTCATTAAGCGATAGTCTGTTGCTGTTCAAAAAGTATGAGA</left_flank>
        <right_flank>ATAGTGATACCAGACCGAGAAGGATGTGAAAAAGGTGTAGTTTAGTTTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCATCAAACTCTGGCTACTCTCGGCAACCGCAGAAAAAAATGGGCGCCACCTAGTCTTTTTGTTTGTTTTACCGTAAAGGAGATATTTTTGAAGATAATCGAAAAGATGGCAGATGGTGTCTCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATTTCATGGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAACGTACCTCGGAGTTCGCTCTCTGGGTTTACAAAATTTCATTAAGCGATAGTCTGTTGCTGTTCAAAAAGTATGAGATATAGTGATACCAGACCGAGAAGGATGTGAAAAAGGTGTAGTTTAGTTTTCGATCTTTCAGAGATATGATGCAGGTGGTGGAAACCGTGTTCTTTTCTAGACTCTTACTCGTTTCTGCCAACAGGCGACACGGACCTGTGTTTTCTCGGGAGAGGGGGGGGGGGCGAACAGAAAAGAGAGAAGCGATGTCGATGATCTCGTGGTATGGAAATGAGTCAAAATAACTGTGGGGTGAGAGATCGAGAGACATAGGAAGTGGGCGGGGTCTTATATTTTTCCTCTCTCCCTCGCAAAACAGCCAGGTTGCCAGATGTAGCTGGTGTGTTAAACAGTACCAACATTATACTCAAAATAAATCTGAGCTATGCTGGTTCATGGAAGTTAATGAGAAGTTTGAAACCAGAGAAAGGGTAGATGAAAAGAGATGGTGTCCCCTTATACCGGTCTCTTCAAAAGTATTTTTGAAATCAATTGTCATGGGATACCGGAACTTTCCGAACC</canonical>
            <polymorphic>ACCATCAAACTCTGGCTACTCTCGGCAACCGCAGAAAAAAATGGGCGCCACCTAGTCTTTTTGTTTGTTTTACCGTAAAGGAGATATTTTTGAAGATAATCGAAAAGATGGCAGATGGTGTCTCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATTTCATGGGAGCCTTACACAGATTATTGGAAGAAAAGAATGGAAAGTGGAAGAAAAGAGAACACTACTTTCCCACATGTTTTCCTCTTCCAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAACGTACCTCGGAGTTCGCTCTCTGGGTTTACAAAATTTCATTAAGCGATAGTCTGTTGCTGTTCAAAAAGTATGAGAWATAGTGATACCAGACCGAGAAGGATGTGAAAAAGGTGTAGTTTAGTTTTCGATCTTTCAGAGATATGATGCAGGTGGTGGAAACCGTGTTCTTTTCTAGACTCTTACTCGTTTCTGCCAACAGGCGACACGGACCTGTGTTTTCTCGGGAGAGGGGGGGGGGGCGAACAGAAAAGAGAGAAGCGATGTCGATGATCTCGTGGTATGGAAATGAGTCAAAATAACTGTGGGGTGAGAGATCGAGAGACATAGGAAGTGGGCGGGGTCTTATATTTTTCCTCTCTCCCTCGCAAAACAGCCAGGTTGCCAGATGTAGCTGGTGTGTTAAACAGTACCAACATTATACTCAAAATAAATCTGAGCTATGCTGGTTCATGGAAGTTAATGAGAAGTTTGAAACCAGAGAAAGGGTAGATGAAAAGAGATGGTGTCCCCTTATACCGGTCTCTTCAAAAGTATTTTTGAAATCAATTGTCATGGGATACCGGAACTTTCCGAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTAGAATTCCAGAAGTAATGAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCTCTGAAAGATCGAAAACTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAACGTACCTCGGAGTTCGCTCTCTGGGTTTACAAAATTTCATTAAGCGATAGTCTGTTGCTGTTCAAAAAGTATGAGATATAGTGATACCAGACCGAGAAGGATGTGAAAAAGGTGTAGTTTAGTTTTCGATCTTTCAGAGA</canonical_amplicon>
		<polymorphic_amplicon>CTTAGAATTCCAGAAGTAATGAGAAGCCCACAGAAACCCCATTTGCCTTCTTGTGAATTCGATGCTTTCATTACGATATACCCGACTAACTACTCAAAACTTCACGAAAACGTACCTCGGAGTTCGCTCTCTGGGTTTACAAAATTTCATTAAGCGATAGTCTGTTGCTGTTCAAAAAGTATGAGAWATAGTGATACCAGACCGAGAAGGATGTGAAAAAGGTGTAGTTTAGTTTTCGATCTTTCAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9659</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>167982</contig_pos>
        <strand>+</strand>
        <context>TTTTGAGATC[A/C]AACGGTGGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATAGCTTGTGAGGAAAGTGATAGAATTGCGGTCGCATACCTTTTGAGATC</left_flank>
        <right_flank>AACGGTGGTAATTGGAGAATTAGAGAGGTACCGATGATTACGTGGGCATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGGAAATGAGTCAAACGACTGTGAGATGAAAGATCGAGAGACACAGGATATGGGCGGAGTCTGTTTTTTCTTTCTTTCTTTAAGACAGAATGGTCATCAGATGTTGCTAGTGTGTTGAACAGTATTGAAACTAGAGAACGAAGTAGATGAAAGGAGTCTTCTCATACCGGCCTCTTCAAAAACCATTTCGGAATAGAATGTCATGAGATACCGATACTTCAAAGAACAACAGATGGGAAACTTCTGATGCACCATTGGGGGATCTGGGGGAGACATAGGAGAGGACCTCTAGAAATACAAAAATATATGTTCATCATATGCTCACGTCAAAGTTTTTGGTTGTTCTTTCCCATCTGATCATTGTTCGGAAAAGAAATAATAACGGGAAACTAGAAGTATTAACCAGAAAGTAGCAAGGAAAAAAGAGAGAACACGAAGCAACTGTCAATAGCTTGTGAGGAAAGTGATAGAATTGCGGTCGCATACCTTTTGAGATCCAACGGTGGTAATTGGAGAATTAGAGAGGTACCGATGATTACGTGGGCATGTTTTGATCGGGAAGATAAGAATTGGAAGCCAATGCAAATGAACCTACACAACTTTCCGAAGAGACTGAACATGTTTGAAGAAGCGCAAAAAGCTAGCTACTAGTAGAAAAACAGGTCACCCGTTGGTTTTTGGCTGACAGTAATTGAAAAAATCATGTTTTTCTAGACAACTTTTCGTTTCTTTCGACAGACACAACGAACGAACACGTGTTCTCTAGAGAGCAAAATGCAAGAGAGAGGTGGCAGGAAATGGGGGGGGGGGGTGATATGGGACACGACGACGATTGATTCGGTGTATGGAAATAAAATGAATTAATGCATAACGAGAGATGAGAAGACACAGAAAAAAGCGACGCTGCTTATCTCTCTGGAATTGCAAAATTGAGCAATTCACCTCCATTTCTAGCCTATACCCTACTGTATATCCCGCTTACATTCTCATAAGACCAA</canonical>
            <polymorphic>TATGGAAATGAGTCAAACGACTGTGAGATGAAAGATCGAGAGACACAGGATATGGGCGGAGTCTGTTTTTTCTTTCTTTCTTTAAGACAGAATGGTCATCAGATGTTGCTAGTGTGTTGAACAGTATTGAAACTAGAGAACGAAGTAGATGAAAGGAGTCTTCTCATACCGGCCTCTTCAAAAACCATTTCGGAATAGAATGTCATGAGATACCGATACTTCAAAGAACAACAGATGGGAAACTTCTGATGCACCATTGGGGGATCTGGGGGAGACATAGGAGAGGACCTCTAGAAATACAAAAATATATGTTCATCATATGCTCACGTCAAAGTTTTTGGTTGTTCTTTCCCATCTGATCATTGTTCGGAAAAGAAATAATAACGGGAAACTAGAAGTATTAACCAGAAAGTAGCAAGGAAAAAAGAGAGAACACGAAGCAACTGTCAATAGCTTGTGAGGAAAGTGATAGAATTGCGGTCGCATACCTTTTGAGATCMAACGGTGGTAATTGGAGAATTAGAGAGGTACCGATGATTACGTGGGCATGTTTTGATCGGGAAGATAAGAATTGGAAGCCAATGCAAATGAACCTACACAACTTTCCGAAGAGACTGAACATGTTTGAAGAAGCGCAAAAAGCTAGCTACTAGTAGAAAAACAGGTCACCCGTTGGTTTTTGGCTGACAGTAATTGAAAAAATCATGTTTTTCTAGACAACTTTTCGTTTCTTTCGACAGACACAACGAACGAACACGTGTTCTCTAGAGAGCAAAATGCAAGAGAGAGGTGGCAGGAAATGGGGGGGGGGGGTGATATGGGACACGACGACGATTGATTCGGTGTATGGAAATAAAATGAATTAATGCATAACGAGAGATGAGAAGACACAGAAAAAAGCGACGCTGCTTATCTCTCTGGAATTGCAAAATTGAGCAATTCACCTCCATTTCTAGCCTATACCCTACTGTATATCCCGCTTACATTCTCATAAGACCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>505 262 233</canonical_bands>
                <polymorphic_bands>738 262</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGGGAAACTAGAAGTATTAACC</pcr_primer_p1>
		<pcr_primer_p2>CTTCTTCAAACATGTTCAGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGGGAAACTAGAAGTATTAACCAGAAAGTAGCAAGGAAAAAAGAGAGAACACGAAGCAACTGTCAATAGCTTGTGAGGAAAGTGATAGAATTGCGGTCGCATACCTTTTGAGATCCAACGGTGGTAATTGGAGAATTAGAGAGGTACCGATGATTACGTGGGCATGTTTTGATCGGGAAGATAAGAATTGGAAGCCAATGCAAATGAACCTACACAACTTTCCGAAGAGACTGAACATGTTTGAAGAAG</canonical_amplicon>
		<polymorphic_amplicon>ACGGGAAACTAGAAGTATTAACCAGAAAGTAGCAAGGAAAAAAGAGAGAACACGAAGCAACTGTCAATAGCTTGTGAGGAAAGTGATAGAATTGCGGTCGCATACCTTTTGAGATCMAACGGTGGTAATTGGAGAATTAGAGAGGTACCGATGATTACGTGGGCATGTTTTGATCGGGAAGATAAGAATTGGAAGCCAATGCAAATGAACCTACACAACTTTCCGAAGAGACTGAACATGTTTGAAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9660</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>167968</contig_pos>
        <strand>+</strand>
        <context>TGCGGTCGCA[A/T]ACCTTTTGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGAAGCAACTGTCAATAGCTTGTGAGGAAAGTGATAGAATTGCGGTCGCA</left_flank>
        <right_flank>ACCTTTTGAGATCCAACGGTGGTAATTGGAGAATTAGAGAGGTACCGATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATGGTCTCGTGGTATGGAAATGAGTCAAACGACTGTGAGATGAAAGATCGAGAGACACAGGATATGGGCGGAGTCTGTTTTTTCTTTCTTTCTTTAAGACAGAATGGTCATCAGATGTTGCTAGTGTGTTGAACAGTATTGAAACTAGAGAACGAAGTAGATGAAAGGAGTCTTCTCATACCGGCCTCTTCAAAAACCATTTCGGAATAGAATGTCATGAGATACCGATACTTCAAAGAACAACAGATGGGAAACTTCTGATGCACCATTGGGGGATCTGGGGGAGACATAGGAGAGGACCTCTAGAAATACAAAAATATATGTTCATCATATGCTCACGTCAAAGTTTTTGGTTGTTCTTTCCCATCTGATCATTGTTCGGAAAAGAAATAATAACGGGAAACTAGAAGTATTAACCAGAAAGTAGCAAGGAAAAAAGAGAGAACACGAAGCAACTGTCAATAGCTTGTGAGGAAAGTGATAGAATTGCGGTCGCATACCTTTTGAGATCCAACGGTGGTAATTGGAGAATTAGAGAGGTACCGATGATTACGTGGGCATGTTTTGATCGGGAAGATAAGAATTGGAAGCCAATGCAAATGAACCTACACAACTTTCCGAAGAGACTGAACATGTTTGAAGAAGCGCAAAAAGCTAGCTACTAGTAGAAAAACAGGTCACCCGTTGGTTTTTGGCTGACAGTAATTGAAAAAATCATGTTTTTCTAGACAACTTTTCGTTTCTTTCGACAGACACAACGAACGAACACGTGTTCTCTAGAGAGCAAAATGCAAGAGAGAGGTGGCAGGAAATGGGGGGGGGGGGTGATATGGGACACGACGACGATTGATTCGGTGTATGGAAATAAAATGAATTAATGCATAACGAGAGATGAGAAGACACAGAAAAAAGCGACGCTGCTTATCTCTCTGGAATTGCAAAATTGAGCAATTCACCTCCATTTCTAGCCTATACCCTACTGTATATCCCGCTTACAT</canonical>
            <polymorphic>CGATGGTCTCGTGGTATGGAAATGAGTCAAACGACTGTGAGATGAAAGATCGAGAGACACAGGATATGGGCGGAGTCTGTTTTTTCTTTCTTTCTTTAAGACAGAATGGTCATCAGATGTTGCTAGTGTGTTGAACAGTATTGAAACTAGAGAACGAAGTAGATGAAAGGAGTCTTCTCATACCGGCCTCTTCAAAAACCATTTCGGAATAGAATGTCATGAGATACCGATACTTCAAAGAACAACAGATGGGAAACTTCTGATGCACCATTGGGGGATCTGGGGGAGACATAGGAGAGGACCTCTAGAAATACAAAAATATATGTTCATCATATGCTCACGTCAAAGTTTTTGGTTGTTCTTTCCCATCTGATCATTGTTCGGAAAAGAAATAATAACGGGAAACTAGAAGTATTAACCAGAAAGTAGCAAGGAAAAAAGAGAGAACACGAAGCAACTGTCAATAGCTTGTGAGGAAAGTGATAGAATTGCGGTCGCAWACCTTTTGAGATCCAACGGTGGTAATTGGAGAATTAGAGAGGTACCGATGATTACGTGGGCATGTTTTGATCGGGAAGATAAGAATTGGAAGCCAATGCAAATGAACCTACACAACTTTCCGAAGAGACTGAACATGTTTGAAGAAGCGCAAAAAGCTAGCTACTAGTAGAAAAACAGGTCACCCGTTGGTTTTTGGCTGACAGTAATTGAAAAAATCATGTTTTTCTAGACAACTTTTCGTTTCTTTCGACAGACACAACGAACGAACACGTGTTCTCTAGAGAGCAAAATGCAAGAGAGAGGTGGCAGGAAATGGGGGGGGGGGGTGATATGGGACACGACGACGATTGATTCGGTGTATGGAAATAAAATGAATTAATGCATAACGAGAGATGAGAAGACACAGAAAAAAGCGACGCTGCTTATCTCTCTGGAATTGCAAAATTGAGCAATTCACCTCCATTTCTAGCCTATACCCTACTGTATATCCCGCTTACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGGGAAACTAGAAGTATTAACC</pcr_primer_p1>
		<pcr_primer_p2>CTTCTTCAAACATGTTCAGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGGGAAACTAGAAGTATTAACCAGAAAGTAGCAAGGAAAAAAGAGAGAACACGAAGCAACTGTCAATAGCTTGTGAGGAAAGTGATAGAATTGCGGTCGCATACCTTTTGAGATCCAACGGTGGTAATTGGAGAATTAGAGAGGTACCGATGATTACGTGGGCATGTTTTGATCGGGAAGATAAGAATTGGAAGCCAATGCAAATGAACCTACACAACTTTCCGAAGAGACTGAACATGTTTGAAGAAG</canonical_amplicon>
		<polymorphic_amplicon>ACGGGAAACTAGAAGTATTAACCAGAAAGTAGCAAGGAAAAAAGAGAGAACACGAAGCAACTGTCAATAGCTTGTGAGGAAAGTGATAGAATTGCGGTCGCAWACCTTTTGAGATCCAACGGTGGTAATTGGAGAATTAGAGAGGTACCGATGATTACGTGGGCATGTTTTGATCGGGAAGATAAGAATTGGAAGCCAATGCAAATGAACCTACACAACTTTCCGAAGAGACTGAACATGTTTGAAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9661</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>167767</contig_pos>
        <strand>+</strand>
        <context>ACATAGGAGA[G/T]GACCTCTAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGGGAAACTTCTGATGCACCATTGGGGGATCTGGGGGAGACATAGGAGA</left_flank>
        <right_flank>GACCTCTAGAAATACAAAAATATATGTTCATCATATGCTCACGTCAAAGT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATCAAAGTAATTGTGTTCTTAAAAATCATATCAGAGCAAGAGAATCGATCAATTTCCAAAATTAGTTTAGAGGAAATTCAGAGCTGATAACCAAAAAGAGTCAACCGTTTAATTGATATTCTTGTTCCTACCAAGAAGCGACAAAAACCTGTGTTCTTCGGGAGAGAGGGGAGCGAAATGAAAGGAGAGAAGCATTGTCGATGGTCTCGTGGTATGGAAATGAGTCAAACGACTGTGAGATGAAAGATCGAGAGACACAGGATATGGGCGGAGTCTGTTTTTTCTTTCTTTCTTTAAGACAGAATGGTCATCAGATGTTGCTAGTGTGTTGAACAGTATTGAAACTAGAGAACGAAGTAGATGAAAGGAGTCTTCTCATACCGGCCTCTTCAAAAACCATTTCGGAATAGAATGTCATGAGATACCGATACTTCAAAGAACAACAGATGGGAAACTTCTGATGCACCATTGGGGGATCTGGGGGAGACATAGGAGAGGACCTCTAGAAATACAAAAATATATGTTCATCATATGCTCACGTCAAAGTTTTTGGTTGTTCTTTCCCATCTGATCATTGTTCGGAAAAGAAATAATAACGGGAAACTAGAAGTATTAACCAGAAAGTAGCAAGGAAAAAAGAGAGAACACGAAGCAACTGTCAATAGCTTGTGAGGAAAGTGATAGAATTGCGGTCGCATACCTTTTGAGATCCAACGGTGGTAATTGGAGAATTAGAGAGGTACCGATGATTACGTGGGCATGTTTTGATCGGGAAGATAAGAATTGGAAGCCAATGCAAATGAACCTACACAACTTTCCGAAGAGACTGAACATGTTTGAAGAAGCGCAAAAAGCTAGCTACTAGTAGAAAAACAGGTCACCCGTTGGTTTTTGGCTGACAGTAATTGAAAAAATCATGTTTTTCTAGACAACTTTTCGTTTCTTTCGACAGACACAACGAACGAACACGTGTTCTCTAGAGAGCAAAATGCAAGAG</canonical>
            <polymorphic>AAAATCAAAGTAATTGTGTTCTTAAAAATCATATCAGAGCAAGAGAATCGATCAATTTCCAAAATTAGTTTAGAGGAAATTCAGAGCTGATAACCAAAAAGAGTCAACCGTTTAATTGATATTCTTGTTCCTACCAAGAAGCGACAAAAACCTGTGTTCTTCGGGAGAGAGGGGAGCGAAATGAAAGGAGAGAAGCATTGTCGATGGTCTCGTGGTATGGAAATGAGTCAAACGACTGTGAGATGAAAGATCGAGAGACACAGGATATGGGCGGAGTCTGTTTTTTCTTTCTTTCTTTAAGACAGAATGGTCATCAGATGTTGCTAGTGTGTTGAACAGTATTGAAACTAGAGAACGAAGTAGATGAAAGGAGTCTTCTCATACCGGCCTCTTCAAAAACCATTTCGGAATAGAATGTCATGAGATACCGATACTTCAAAGAACAACAGATGGGAAACTTCTGATGCACCATTGGGGGATCTGGGGGAGACATAGGAGAKGACCTCTAGAAATACAAAAATATATGTTCATCATATGCTCACGTCAAAGTTTTTGGTTGTTCTTTCCCATCTGATCATTGTTCGGAAAAGAAATAATAACGGGAAACTAGAAGTATTAACCAGAAAGTAGCAAGGAAAAAAGAGAGAACACGAAGCAACTGTCAATAGCTTGTGAGGAAAGTGATAGAATTGCGGTCGCATACCTTTTGAGATCCAACGGTGGTAATTGGAGAATTAGAGAGGTACCGATGATTACGTGGGCATGTTTTGATCGGGAAGATAAGAATTGGAAGCCAATGCAAATGAACCTACACAACTTTCCGAAGAGACTGAACATGTTTGAAGAAGCGCAAAAAGCTAGCTACTAGTAGAAAAACAGGTCACCCGTTGGTTTTTGGCTGACAGTAATTGAAAAAATCATGTTTTTCTAGACAACTTTTCGTTTCTTTCGACAGACACAACGAACGAACACGTGTTCTCTAGAGAGCAAAATGCAAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AGGWCCT</site>
                <isoschizomers>
                    <enzyme>Sse8647I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAACGAAGTAGATGAAAGGAGT</pcr_primer_p1>
		<pcr_primer_p2>TATTATTTCTTTTCCGAACAATG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGAACGAAGTAGATGAAAGGAGTCTTCTCATACCGGCCTCTTCAAAAACCATTTCGGAATAGAATGTCATGAGATACCGATACTTCAAAGAACAACAGATGGGAAACTTCTGATGCACCATTGGGGGATCTGGGGGAGACATAGGAGAGGACCTCTAGAAATACAAAAATATATGTTCATCATATGCTCACGTCAAAGTTTTTGGTTGTTCTTTCCCATCTGATCATTGTTCGGAAAAGAAATAATA</canonical_amplicon>
		<polymorphic_amplicon>AGAACGAAGTAGATGAAAGGAGTCTTCTCATACCGGCCTCTTCAAAAACCATTTCGGAATAGAATGTCATGAGATACCGATACTTCAAAGAACAACAGATGGGAAACTTCTGATGCACCATTGGGGGATCTGGGGGAGACATAGGAGAKGACCTCTAGAAATACAAAAATATATGTTCATCATATGCTCACGTCAAAGTTTTTGGTTGTTCTTTCCCATCTGATCATTGTTCGGAAAAGAAATAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9663</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>4775</contig_pos>
        <strand></strand>
        <context>AAATCTCCGA[A/G]GGAACGTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAGATTTGGATTCAAAAAATCATTTTACTGTGCGTCAGAAAATCTCCGA</left_flank>
        <right_flank>GGAACGTTCAGGCAAGTTGAATGAAGAGTATTCTAGACTAGTAAATTATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGCCGGAGCTTGGTCAGATTCCGGCAAAGACATTGTGGGAAGCCGACCAAGATCTGACAAATTACCGACCAGCTTTCGACCTCTTAACACGCAGCGCCTTCAAATTCCGGCCAAAATCTGACCATTGTCCGTCCCACTGCGGTCAGTGTGCAGCTTCTGACCAAAATCTGACCAAAATCCGTCCAAAAGCCGAACCCCCCTCAACTTCCGTCCAGAAGTTGCAAGCCGACAGCCGAGAACGCAAGAGGTTTCATTTTCTGGAATTTCCTAGAAGTTGAGGAAACCGTTTTTGAAAAGCGCTGTTCTACATTAAATATTCACAAGATGTTGAGATTCCCTTGTCACATATTCATGTACACCTATTTCAGTGAGCATTTCCAAGACTCGTATTACAATCAATACCAAATCGAGAGGCACCCACGGTACAAAAATATTGCTACATTGGTGCAAGATTTGGATTCAAAAAATCATTTTACTGTGCGTCAGAAAATCTCCGAAGGAACGTTCAGGCAAGTTGAATGAAGAGTATTCTAGACTAGTAAATTATTTTCAGCAAGGTCTTCCTAGTTCAGTCAACAACCTCGAATCAAAATTACGCGATGAAGACGTCGATTAGAAGAAGTAAAGATGATAGAATTCCGCGTTCTATTCTCAAGGAAGTTCTCATGGTACATCACATGGAACATAAAAATGTCATTTCATTCATTGAATGCTTCTCGACAAAAAGTGAATTAATAAATAAGAGAATATTATCTAATTTTGAAATATTTCAGATGAGGAAGGCCACACTATTTTTCATCTTGTATTCCAGTTGTGTTCTTTTGATTTGAATCACCTTCTTCATATTGCCGGCGCCCCCCTTACCATTGGCAACAAACGGACATTAACCCGTTCATTGCTTGCCGGATTGGAATATACCCATTCGAAAAATATAGTCCACCGGGATCTGAAGCCACACAACATTTTGATATCGGAAACTGGCCGTTTGAAAATCGCTG</canonical>
            <polymorphic>CTGGCCGGAGCTTGGTCAGATTCCGGCAAAGACATTGTGGGAAGCCGACCAAGATCTGACAAATTACCGACCAGCTTTCGACCTCTTAACACGCAGCGCCTTCAAATTCCGGCCAAAATCTGACCATTGTCCGTCCCACTGCGGTCAGTGTGCAGCTTCTGACCAAAATCTGACCAAAATCCGTCCAAAAGCCGAACCCCCCTCAACTTCCGTCCAGAAGTTGCAAGCCGACAGCCGAGAACGCAAGAGGTTTCATTTTCTGGAATTTCCTAGAAGTTGAGGAAACCGTTTTTGAAAAGCGCTGTTCTACATTAAATATTCACAAGATGTTGAGATTCCCTTGTCACATATTCATGTACACCTATTTCAGTGAGCATTTCCAAGACTCGTATTACAATCAATACCAAATCGAGAGGCACCCACGGTACAAAAATATTGCTACATTGGTGCAAGATTTGGATTCAAAAAATCATTTTACTGTGCGTCAGAAAATCTCCGARGGAACGTTCAGGCAAGTTGAATGAAGAGTATTCTAGACTAGTAAATTATTTTCAGCAAGGTCTTCCTAGTTCAGTCAACAACCTCGAATCAAAATTACGCGATGAAGACGTCGATTAGAAGAAGTAAAGATGATAGAATTCCGCGTTCTATTCTCAAGGAAGTTCTCATGGTACATCACATGGAACATAAAAATGTCATTTCATTCATTGAATGCTTCTCGACAAAAAGTGAATTAATAAATAAGAGAATATTATCTAATTTTGAAATATTTCAGATGAGGAAGGCCACACTATTTTTCATCTTGTATTCCAGTTGTGTTCTTTTGATTTGAATCACCTTCTTCATATTGCCGGCGCCCCCCTTACCATTGGCAACAAACGGACATTAACCCGTTCATTGCTTGCCGGATTGGAATATACCCATTCGAAAAATATAGTCCACCGGGATCTGAAGCCACACAACATTTTGATATCGGAAACTGGCCGTTTGAAAATCGCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTCCCTTGTCACATATTCAT</pcr_primer_p1>
		<pcr_primer_p2>GTTGTTGACTGAACTAGGAAGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATTCCCTTGTCACATATTCATGTACACCTATTTCAGTGAGCATTTCCAAGACTCGTATTACAATCAATACCAAATCGAGAGGCACCCACGGTACAAAAATATTGCTACATTGGTGCAAGATTTGGATTCAAAAAATCATTTTACTGTGCGTCAGAAAATCTCCGAAGGAACGTTCAGGCAAGTTGAATGAAGAGTATTCTAGACTAGTAAATTATTTTCAGCAAGGTCTTCCTAGTTCAGTCAACAAC</canonical_amplicon>
		<polymorphic_amplicon>GATTCCCTTGTCACATATTCATGTACACCTATTTCAGTGAGCATTTCCAAGACTCGTATTACAATCAATACCAAATCGAGAGGCACCCACGGTACAAAAATATTGCTACATTGGTGCAAGATTTGGATTCAAAAAATCATTTTACTGTGCGTCAGAAAATCTCCGARGGAACGTTCAGGCAAGTTGAATGAAGAGTATTCTAGACTAGTAAATTATTTTCAGCAAGGTCTTCCTAGTTCAGTCAACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9664</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>4717</contig_pos>
        <strand></strand>
        <context>AATATTGCTA[C/T]ATTGGTGCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTACAATCAATACCAAATCGAGAGGCACCCACGGTACAAAAATATTGCTA</left_flank>
        <right_flank>ATTGGTGCAAGATTTGGATTCAAAAAATCATTTTACTGTGCGTCAGAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAAACGACATAATTTATGGAATACCCTAATATAACTCAGGCGTCGCCGGTTACTTCTGGCCGGAGCTTGGTCAGATTCCGGCAAAGACATTGTGGGAAGCCGACCAAGATCTGACAAATTACCGACCAGCTTTCGACCTCTTAACACGCAGCGCCTTCAAATTCCGGCCAAAATCTGACCATTGTCCGTCCCACTGCGGTCAGTGTGCAGCTTCTGACCAAAATCTGACCAAAATCCGTCCAAAAGCCGAACCCCCCTCAACTTCCGTCCAGAAGTTGCAAGCCGACAGCCGAGAACGCAAGAGGTTTCATTTTCTGGAATTTCCTAGAAGTTGAGGAAACCGTTTTTGAAAAGCGCTGTTCTACATTAAATATTCACAAGATGTTGAGATTCCCTTGTCACATATTCATGTACACCTATTTCAGTGAGCATTTCCAAGACTCGTATTACAATCAATACCAAATCGAGAGGCACCCACGGTACAAAAATATTGCTACATTGGTGCAAGATTTGGATTCAAAAAATCATTTTACTGTGCGTCAGAAAATCTCCGAAGGAACGTTCAGGCAAGTTGAATGAAGAGTATTCTAGACTAGTAAATTATTTTCAGCAAGGTCTTCCTAGTTCAGTCAACAACCTCGAATCAAAATTACGCGATGAAGACGTCGATTAGAAGAAGTAAAGATGATAGAATTCCGCGTTCTATTCTCAAGGAAGTTCTCATGGTACATCACATGGAACATAAAAATGTCATTTCATTCATTGAATGCTTCTCGACAAAAAGTGAATTAATAAATAAGAGAATATTATCTAATTTTGAAATATTTCAGATGAGGAAGGCCACACTATTTTTCATCTTGTATTCCAGTTGTGTTCTTTTGATTTGAATCACCTTCTTCATATTGCCGGCGCCCCCCTTACCATTGGCAACAAACGGACATTAACCCGTTCATTGCTTGCCGGATTGGAATATACCCATTCGAAAAATATAGTCCAC</canonical>
            <polymorphic>CAAAAAACGACATAATTTATGGAATACCCTAATATAACTCAGGCGTCGCCGGTTACTTCTGGCCGGAGCTTGGTCAGATTCCGGCAAAGACATTGTGGGAAGCCGACCAAGATCTGACAAATTACCGACCAGCTTTCGACCTCTTAACACGCAGCGCCTTCAAATTCCGGCCAAAATCTGACCATTGTCCGTCCCACTGCGGTCAGTGTGCAGCTTCTGACCAAAATCTGACCAAAATCCGTCCAAAAGCCGAACCCCCCTCAACTTCCGTCCAGAAGTTGCAAGCCGACAGCCGAGAACGCAAGAGGTTTCATTTTCTGGAATTTCCTAGAAGTTGAGGAAACCGTTTTTGAAAAGCGCTGTTCTACATTAAATATTCACAAGATGTTGAGATTCCCTTGTCACATATTCATGTACACCTATTTCAGTGAGCATTTCCAAGACTCGTATTACAATCAATACCAAATCGAGAGGCACCCACGGTACAAAAATATTGCTAYATTGGTGCAAGATTTGGATTCAAAAAATCATTTTACTGTGCGTCAGAAAATCTCCGAAGGAACGTTCAGGCAAGTTGAATGAAGAGTATTCTAGACTAGTAAATTATTTTCAGCAAGGTCTTCCTAGTTCAGTCAACAACCTCGAATCAAAATTACGCGATGAAGACGTCGATTAGAAGAAGTAAAGATGATAGAATTCCGCGTTCTATTCTCAAGGAAGTTCTCATGGTACATCACATGGAACATAAAAATGTCATTTCATTCATTGAATGCTTCTCGACAAAAAGTGAATTAATAAATAAGAGAATATTATCTAATTTTGAAATATTTCAGATGAGGAAGGCCACACTATTTTTCATCTTGTATTCCAGTTGTGTTCTTTTGATTTGAATCACCTTCTTCATATTGCCGGCGCCCCCCTTACCATTGGCAACAAACGGACATTAACCCGTTCATTGCTTGCCGGATTGGAATATACCCATTCGAAAAATATAGTCCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTCCCTTGTCACATATTCAT</pcr_primer_p1>
		<pcr_primer_p2>GTTGTTGACTGAACTAGGAAGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATTCCCTTGTCACATATTCATGTACACCTATTTCAGTGAGCATTTCCAAGACTCGTATTACAATCAATACCAAATCGAGAGGCACCCACGGTACAAAAATATTGCTACATTGGTGCAAGATTTGGATTCAAAAAATCATTTTACTGTGCGTCAGAAAATCTCCGAAGGAACGTTCAGGCAAGTTGAATGAAGAGTATTCTAGACTAGTAAATTATTTTCAGCAAGGTCTTCCTAGTTCAGTCAACAAC</canonical_amplicon>
		<polymorphic_amplicon>GATTCCCTTGTCACATATTCATGTACACCTATTTCAGTGAGCATTTCCAAGACTCGTATTACAATCAATACCAAATCGAGAGGCACCCACGGTACAAAAATATTGCTAYATTGGTGCAAGATTTGGATTCAAAAAATCATTTTACTGTGCGTCAGAAAATCTCCGAAGGAACGTTCAGGCAAGTTGAATGAAGAGTATTCTAGACTAGTAAATTATTTTCAGCAAGGTCTTCCTAGTTCAGTCAACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9665</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>271514</contig_pos>
        <strand>+</strand>
        <context>GGAGGTAGGG[A/G]GGAGAGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGATTTCAGAACACGCTGAAGTGAGAAAATTCCGATCGGGAGGTAGGG</left_flank>
        <right_flank>GGAGAGAAAAGAAGAATGTGGAAGCGAAGTGAAAAGAGATAGGCAGGTTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAGGAATGGGAGGCTAGAGACAAACTTTGGATGATGGGAAGAAAAAACCTAAAAAATTGATGTGAACCGAATGGAGGAGGAATTTGGGAATTAGAAAAAACAGGAGACAAATGATGGGCAACGAGAGAAAAAGCATACCAGAACATTAAAAACCGATTAGAAAATGAATTTGAAGCAGAAACAAATGGAAAAGTGTAGATGATGGTGAGAAAGAAGAATACCAAAATGTAGAAAACCGAATGTAGAATGATTTCAATATCCGTAGAATAGAAGATATTCTGATCGGAAGGTGGGGAGAGAAAAGAAATTTAGGGACAAAGTGGAGAGAGATGAGAAAGAGCTGGTTGAGGAAATAAGTTTCTAAGTCTCAAGATTGAGAAAGATGTCAGAAAAAATGGGGTGATGGGAAGGATGAAATATACCAGAGGGTTTAGAACCGAATGTAGAATGATTTCAGAACACGCTGAAGTGAGAAAATTCCGATCGGGAGGTAGGGAGGAGAGAAAAGAAGAATGTGGAAGCGAAGTGAAAAGAGATAGGCAGGTTAGGGATGAAATAAATTTCGAAATCTTGAGATTCGCAAAAAAGGGATACATATTTGGGTGATGGGAAGAAGGCAGGAGCAGAAGGGAACGAGACGATAGGGAGCTGAAAGAGCAGAAGTTGGATGGTGGTGGAGGAAGGTCTACGTGATGGTGTTGGAAATGAAGATTCTGAAAAAACACACATGTGAAAAAATTACAGTAAAATTTCAGTTACAGTACCGGTCAAACAGATACACAAAAACATGTTTTCAGTTGATTTTCTCATCTTTAAGAGTCTGGAGCTCGACTATCAAGTGTCCGGACACTTTGAACATTATGGAAAGTGTAAAACAAATCTAGGTGAAAATTTTGAATTCACAGCATTTTTTGAAAATTCCTAGTCTTTCAGATATTTGCCGATTTTTGAAAGACACCCGTTTGGCCAGTTTTTGTACTGAAAATGTGATAGCTAG</canonical>
            <polymorphic>AAGAAGGAATGGGAGGCTAGAGACAAACTTTGGATGATGGGAAGAAAAAACCTAAAAAATTGATGTGAACCGAATGGAGGAGGAATTTGGGAATTAGAAAAAACAGGAGACAAATGATGGGCAACGAGAGAAAAAGCATACCAGAACATTAAAAACCGATTAGAAAATGAATTTGAAGCAGAAACAAATGGAAAAGTGTAGATGATGGTGAGAAAGAAGAATACCAAAATGTAGAAAACCGAATGTAGAATGATTTCAATATCCGTAGAATAGAAGATATTCTGATCGGAAGGTGGGGAGAGAAAAGAAATTTAGGGACAAAGTGGAGAGAGATGAGAAAGAGCTGGTTGAGGAAATAAGTTTCTAAGTCTCAAGATTGAGAAAGATGTCAGAAAAAATGGGGTGATGGGAAGGATGAAATATACCAGAGGGTTTAGAACCGAATGTAGAATGATTTCAGAACACGCTGAAGTGAGAAAATTCCGATCGGGAGGTAGGGRGGAGAGAAAAGAAGAATGTGGAAGCGAAGTGAAAAGAGATAGGCAGGTTAGGGATGAAATAAATTTCGAAATCTTGAGATTCGCAAAAAAGGGATACATATTTGGGTGATGGGAAGAAGGCAGGAGCAGAAGGGAACGAGACGATAGGGAGCTGAAAGAGCAGAAGTTGGATGGTGGTGGAGGAAGGTCTACGTGATGGTGTTGGAAATGAAGATTCTGAAAAAACACACATGTGAAAAAATTACAGTAAAATTTCAGTTACAGTACCGGTCAAACAGATACACAAAAACATGTTTTCAGTTGATTTTCTCATCTTTAAGAGTCTGGAGCTCGACTATCAAGTGTCCGGACACTTTGAACATTATGGAAAGTGTAAAACAAATCTAGGTGAAAATTTTGAATTCACAGCATTTTTTGAAAATTCCTAGTCTTTCAGATATTTGCCGATTTTTGAAAGACACCCGTTTGGCCAGTTTTTGTACTGAAAATGTGATAGCTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTGGAGAGAGATGAGAAAGAG</pcr_primer_p1>
		<pcr_primer_p2>AAATTTATTTCATCCCTAACCTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAGTGGAGAGAGATGAGAAAGAGCTGGTTGAGGAAATAAGTTTCTAAGTCTCAAGATTGAGAAAGATGTCAGAAAAAATGGGGTGATGGGAAGGATGAAATATACCAGAGGGTTTAGAACCGAATGTAGAATGATTTCAGAACACGCTGAAGTGAGAAAATTCCGATCGGGAGGTAGGGAGGAGAGAAAAGAAGAATGTGGAAGCGAAGTGAAAAGAGATAGGCAGGTTAGGGATGAAATAAATTT</canonical_amplicon>
		<polymorphic_amplicon>AAGTGGAGAGAGATGAGAAAGAGCTGGTTGAGGAAATAAGTTTCTAAGTCTCAAGATTGAGAAAGATGTCAGAAAAAATGGGGTGATGGGAAGGATGAAATATACCAGAGGGTTTAGAACCGAATGTAGAATGATTTCAGAACACGCTGAAGTGAGAAAATTCCGATCGGGAGGTAGGGRGGAGAGAAAAGAAGAATGTGGAAGCGAAGTGAAAAGAGATAGGCAGGTTAGGGATGAAATAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9666</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>271315</contig_pos>
        <strand>+</strand>
        <context>AGGTGGGGAG[A/T]GAAAAGAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGATTTCAATATCCGTAGAATAGAAGATATTCTGATCGGAAGGTGGGGAG</left_flank>
        <right_flank>GAAAAGAAATTTAGGGACAAAGTGGAGAGAGATGAGAAAGAGCTGGTTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTGAAGACACACATTTTATTTTTCGAAAAATTCAATTGAACATAGACACATAGAGAAATACCAAAAGAAACCAATGAATCATAAGAAAAAATGAGATGGGTTGATAATTTTTTGTGACTTTGGGAGGTGGGAAGGGTATACATACCATGAAAGATCATCGTGAAAATCAGTGAAATGGAGTTAGTAGAACACATAAAGAAGGAATGGGAGGCTAGAGACAAACTTTGGATGATGGGAAGAAAAAACCTAAAAAATTGATGTGAACCGAATGGAGGAGGAATTTGGGAATTAGAAAAAACAGGAGACAAATGATGGGCAACGAGAGAAAAAGCATACCAGAACATTAAAAACCGATTAGAAAATGAATTTGAAGCAGAAACAAATGGAAAAGTGTAGATGATGGTGAGAAAGAAGAATACCAAAATGTAGAAAACCGAATGTAGAATGATTTCAATATCCGTAGAATAGAAGATATTCTGATCGGAAGGTGGGGAGAGAAAAGAAATTTAGGGACAAAGTGGAGAGAGATGAGAAAGAGCTGGTTGAGGAAATAAGTTTCTAAGTCTCAAGATTGAGAAAGATGTCAGAAAAAATGGGGTGATGGGAAGGATGAAATATACCAGAGGGTTTAGAACCGAATGTAGAATGATTTCAGAACACGCTGAAGTGAGAAAATTCCGATCGGGAGGTAGGGAGGAGAGAAAAGAAGAATGTGGAAGCGAAGTGAAAAGAGATAGGCAGGTTAGGGATGAAATAAATTTCGAAATCTTGAGATTCGCAAAAAAGGGATACATATTTGGGTGATGGGAAGAAGGCAGGAGCAGAAGGGAACGAGACGATAGGGAGCTGAAAGAGCAGAAGTTGGATGGTGGTGGAGGAAGGTCTACGTGATGGTGTTGGAAATGAAGATTCTGAAAAAACACACATGTGAAAAAATTACAGTAAAATTTCAGTTACAGTACCGGTCAAACAGATACACAAAAACATGTTTTCAGT</canonical>
            <polymorphic>TTTTTTGAAGACACACATTTTATTTTTCGAAAAATTCAATTGAACATAGACACATAGAGAAATACCAAAAGAAACCAATGAATCATAAGAAAAAATGAGATGGGTTGATAATTTTTTGTGACTTTGGGAGGTGGGAAGGGTATACATACCATGAAAGATCATCGTGAAAATCAGTGAAATGGAGTTAGTAGAACACATAAAGAAGGAATGGGAGGCTAGAGACAAACTTTGGATGATGGGAAGAAAAAACCTAAAAAATTGATGTGAACCGAATGGAGGAGGAATTTGGGAATTAGAAAAAACAGGAGACAAATGATGGGCAACGAGAGAAAAAGCATACCAGAACATTAAAAACCGATTAGAAAATGAATTTGAAGCAGAAACAAATGGAAAAGTGTAGATGATGGTGAGAAAGAAGAATACCAAAATGTAGAAAACCGAATGTAGAATGATTTCAATATCCGTAGAATAGAAGATATTCTGATCGGAAGGTGGGGAGWGAAAAGAAATTTAGGGACAAAGTGGAGAGAGATGAGAAAGAGCTGGTTGAGGAAATAAGTTTCTAAGTCTCAAGATTGAGAAAGATGTCAGAAAAAATGGGGTGATGGGAAGGATGAAATATACCAGAGGGTTTAGAACCGAATGTAGAATGATTTCAGAACACGCTGAAGTGAGAAAATTCCGATCGGGAGGTAGGGAGGAGAGAAAAGAAGAATGTGGAAGCGAAGTGAAAAGAGATAGGCAGGTTAGGGATGAAATAAATTTCGAAATCTTGAGATTCGCAAAAAAGGGATACATATTTGGGTGATGGGAAGAAGGCAGGAGCAGAAGGGAACGAGACGATAGGGAGCTGAAAGAGCAGAAGTTGGATGGTGGTGGAGGAAGGTCTACGTGATGGTGTTGGAAATGAAGATTCTGAAAAAACACACATGTGAAAAAATTACAGTAAAATTTCAGTTACAGTACCGGTCAAACAGATACACAAAAACATGTTTTCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGAAAGAAGAATACCAAAATG</pcr_primer_p1>
		<pcr_primer_p2>AAATCATTCTACATTCGGTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAGAAAGAAGAATACCAAAATGTAGAAAACCGAATGTAGAATGATTTCAATATCCGTAGAATAGAAGATATTCTGATCGGAAGGTGGGGAGAGAAAAGAAATTTAGGGACAAAGTGGAGAGAGATGAGAAAGAGCTGGTTGAGGAAATAAGTTTCTAAGTCTCAAGATTGAGAAAGATGTCAGAAAAAATGGGGTGATGGGAAGGATGAAATATACCAGAGGGTTTAGAACCGAATGTAGAATGATTT</canonical_amplicon>
		<polymorphic_amplicon>TGAGAAAGAAGAATACCAAAATGTAGAAAACCGAATGTAGAATGATTTCAATATCCGTAGAATAGAAGATATTCTGATCGGAAGGTGGGGAGWGAAAAGAAATTTAGGGACAAAGTGGAGAGAGATGAGAAAGAGCTGGTTGAGGAAATAAGTTTCTAAGTCTCAAGATTGAGAAAGATGTCAGAAAAAATGGGGTGATGGGAAGGATGAAATATACCAGAGGGTTTAGAACCGAATGTAGAATGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9667</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>271290</contig_pos>
        <strand>+</strand>
        <context>TAGAATAGAA[G/T]ATATTCTGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAATGTAGAAAACCGAATGTAGAATGATTTCAATATCCGTAGAATAGAA</left_flank>
        <right_flank>ATATTCTGATCGGAAGGTGGGGAGAGAAAAGAAATTTAGGGACAAAGTGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTGAAAGTTAGAGGAGCAAAAAATTTTTTGAAGACACACATTTTATTTTTCGAAAAATTCAATTGAACATAGACACATAGAGAAATACCAAAAGAAACCAATGAATCATAAGAAAAAATGAGATGGGTTGATAATTTTTTGTGACTTTGGGAGGTGGGAAGGGTATACATACCATGAAAGATCATCGTGAAAATCAGTGAAATGGAGTTAGTAGAACACATAAAGAAGGAATGGGAGGCTAGAGACAAACTTTGGATGATGGGAAGAAAAAACCTAAAAAATTGATGTGAACCGAATGGAGGAGGAATTTGGGAATTAGAAAAAACAGGAGACAAATGATGGGCAACGAGAGAAAAAGCATACCAGAACATTAAAAACCGATTAGAAAATGAATTTGAAGCAGAAACAAATGGAAAAGTGTAGATGATGGTGAGAAAGAAGAATACCAAAATGTAGAAAACCGAATGTAGAATGATTTCAATATCCGTAGAATAGAAGATATTCTGATCGGAAGGTGGGGAGAGAAAAGAAATTTAGGGACAAAGTGGAGAGAGATGAGAAAGAGCTGGTTGAGGAAATAAGTTTCTAAGTCTCAAGATTGAGAAAGATGTCAGAAAAAATGGGGTGATGGGAAGGATGAAATATACCAGAGGGTTTAGAACCGAATGTAGAATGATTTCAGAACACGCTGAAGTGAGAAAATTCCGATCGGGAGGTAGGGAGGAGAGAAAAGAAGAATGTGGAAGCGAAGTGAAAAGAGATAGGCAGGTTAGGGATGAAATAAATTTCGAAATCTTGAGATTCGCAAAAAAGGGATACATATTTGGGTGATGGGAAGAAGGCAGGAGCAGAAGGGAACGAGACGATAGGGAGCTGAAAGAGCAGAAGTTGGATGGTGGTGGAGGAAGGTCTACGTGATGGTGTTGGAAATGAAGATTCTGAAAAAACACACATGTGAAAAAATTACAGTAAAATTTCAGTTACAGTACCGGTCAAAC</canonical>
            <polymorphic>GTCTGAAAGTTAGAGGAGCAAAAAATTTTTTGAAGACACACATTTTATTTTTCGAAAAATTCAATTGAACATAGACACATAGAGAAATACCAAAAGAAACCAATGAATCATAAGAAAAAATGAGATGGGTTGATAATTTTTTGTGACTTTGGGAGGTGGGAAGGGTATACATACCATGAAAGATCATCGTGAAAATCAGTGAAATGGAGTTAGTAGAACACATAAAGAAGGAATGGGAGGCTAGAGACAAACTTTGGATGATGGGAAGAAAAAACCTAAAAAATTGATGTGAACCGAATGGAGGAGGAATTTGGGAATTAGAAAAAACAGGAGACAAATGATGGGCAACGAGAGAAAAAGCATACCAGAACATTAAAAACCGATTAGAAAATGAATTTGAAGCAGAAACAAATGGAAAAGTGTAGATGATGGTGAGAAAGAAGAATACCAAAATGTAGAAAACCGAATGTAGAATGATTTCAATATCCGTAGAATAGAAKATATTCTGATCGGAAGGTGGGGAGAGAAAAGAAATTTAGGGACAAAGTGGAGAGAGATGAGAAAGAGCTGGTTGAGGAAATAAGTTTCTAAGTCTCAAGATTGAGAAAGATGTCAGAAAAAATGGGGTGATGGGAAGGATGAAATATACCAGAGGGTTTAGAACCGAATGTAGAATGATTTCAGAACACGCTGAAGTGAGAAAATTCCGATCGGGAGGTAGGGAGGAGAGAAAAGAAGAATGTGGAAGCGAAGTGAAAAGAGATAGGCAGGTTAGGGATGAAATAAATTTCGAAATCTTGAGATTCGCAAAAAAGGGATACATATTTGGGTGATGGGAAGAAGGCAGGAGCAGAAGGGAACGAGACGATAGGGAGCTGAAAGAGCAGAAGTTGGATGGTGGTGGAGGAAGGTCTACGTGATGGTGTTGGAAATGAAGATTCTGAAAAAACACACATGTGAAAAAATTACAGTAAAATTTCAGTTACAGTACCGGTCAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGAAAGAAGAATACCAAAATG</pcr_primer_p1>
		<pcr_primer_p2>AAATCATTCTACATTCGGTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAGAAAGAAGAATACCAAAATGTAGAAAACCGAATGTAGAATGATTTCAATATCCGTAGAATAGAAGATATTCTGATCGGAAGGTGGGGAGAGAAAAGAAATTTAGGGACAAAGTGGAGAGAGATGAGAAAGAGCTGGTTGAGGAAATAAGTTTCTAAGTCTCAAGATTGAGAAAGATGTCAGAAAAAATGGGGTGATGGGAAGGATGAAATATACCAGAGGGTTTAGAACCGAATGTAGAATGATTT</canonical_amplicon>
		<polymorphic_amplicon>TGAGAAAGAAGAATACCAAAATGTAGAAAACCGAATGTAGAATGATTTCAATATCCGTAGAATAGAAKATATTCTGATCGGAAGGTGGGGAGAGAAAAGAAATTTAGGGACAAAGTGGAGAGAGATGAGAAAGAGCTGGTTGAGGAAATAAGTTTCTAAGTCTCAAGATTGAGAAAGATGTCAGAAAAAATGGGGTGATGGGAAGGATGAAATATACCAGAGGGTTTAGAACCGAATGTAGAATGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9668</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>335927</contig_pos>
        <strand>+</strand>
        <context>TAATTTTGTG[A/G]ATCATATAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGAACAATATCCTGTACAAATTGAGAAAGAGTATCAAATTAATTTTGTG</left_flank>
        <right_flank>ATCATATAAATCTTCAAAATAATTTAAGAAATGGAGAAGATATCAAAAAA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGACCCGTTCGGAGTACTTATTTAGCATTTCAAAAAGGTACTCTTTGAAAGCATGATTGGTCTAATTTAGCTGTTTTTTAGAACTGCCGTCATTACACCCACTTCAAATCGAGATCATAGAATTTTGGAAAACGCGCACACCAGGAACTTTGCCGTTTATGGAAACGCTGAAAACACTAAAAAGAGAGTTGACAGCTCGAATCAACGCCTATAATTCTGGAGACATGGAAACGTGGAAGATGAAACGATTTTTGGAAACTGTCAAAGAGGAGCTGCTTTCAGATTACGGAGAGACTGTTGTCTTACAGGATCTTTCGTTTTTGTTCCATAAATATTTATCAGACTACAACCGAAATGTGCTTTACAAGCGTTACATGGAAATGGTCATCACGTTTCCAATGTGGAAACCAGTAGTAGATCCCGAGTTTTCTGTGGTACTTAAAGATTTAGAACAATATCCTGTACAAATTGAGAAAGAGTATCAAATTAATTTTGTGAATCATATAAATCTTCAAAATAATTTAAGAAATGGAGAAGATATCAAAAAAGGTTTGTGTCAAAAGTATATACTAAAATGTACAAACAGTAACGGTCAATAAAATATAAAACATTTTTTCAGTTTATGTTCTGCTATTTTGACAATTTTCAGGATTTGCGAGCTTGGTTGTCAAGTTTCCGATCACTTTGAAAATTTACGAGAGTGTGAAACATACCTAGATCACTGTGAATTCACAGAATTGTTAGAAAGTTCTTAGTTTTTTTAATGTTTGCCGATTTCTGAAAAACGCTCATTTTTTTACATATTCAGAACAAAGCAAGCCAAAAAAAGTCGTTCATAAAACTGCAAAAAGCTGAAAAATCAGGAATTTCAAAATTTTCTGGATGCGAAATTTCTACTCTGGGTCTGTTGAAGACCCTCAAAAAAATTTTTGATGTGTTCGGAAACTTGACAGCCAAGCTCGAGACTAATGAAAATGGCCGAAAATGAACTGAAAAAT</canonical>
            <polymorphic>TCAGACCCGTTCGGAGTACTTATTTAGCATTTCAAAAAGGTACTCTTTGAAAGCATGATTGGTCTAATTTAGCTGTTTTTTAGAACTGCCGTCATTACACCCACTTCAAATCGAGATCATAGAATTTTGGAAAACGCGCACACCAGGAACTTTGCCGTTTATGGAAACGCTGAAAACACTAAAAAGAGAGTTGACAGCTCGAATCAACGCCTATAATTCTGGAGACATGGAAACGTGGAAGATGAAACGATTTTTGGAAACTGTCAAAGAGGAGCTGCTTTCAGATTACGGAGAGACTGTTGTCTTACAGGATCTTTCGTTTTTGTTCCATAAATATTTATCAGACTACAACCGAAATGTGCTTTACAAGCGTTACATGGAAATGGTCATCACGTTTCCAATGTGGAAACCAGTAGTAGATCCCGAGTTTTCTGTGGTACTTAAAGATTTAGAACAATATCCTGTACAAATTGAGAAAGAGTATCAAATTAATTTTGTGRATCATATAAATCTTCAAAATAATTTAAGAAATGGAGAAGATATCAAAAAAGGTTTGTGTCAAAAGTATATACTAAAATGTACAAACAGTAACGGTCAATAAAATATAAAACATTTTTTCAGTTTATGTTCTGCTATTTTGACAATTTTCAGGATTTGCGAGCTTGGTTGTCAAGTTTCCGATCACTTTGAAAATTTACGAGAGTGTGAAACATACCTAGATCACTGTGAATTCACAGAATTGTTAGAAAGTTCTTAGTTTTTTTAATGTTTGCCGATTTCTGAAAAACGCTCATTTTTTTACATATTCAGAACAAAGCAAGCCAAAAAAAGTCGTTCATAAAACTGCAAAAAGCTGAAAAATCAGGAATTTCAAAATTTTCTGGATGCGAAATTTCTACTCTGGGTCTGTTGAAGACCCTCAAAAAAATTTTTGATGTGTTCGGAAACTTGACAGCCAAGCTCGAGACTAATGAAAATGGCCGAAAATGAACTGAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>501 298 201</canonical_bands>
                <polymorphic_bands>799 201</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 298 201</canonical_bands>
                <polymorphic_bands>799 201</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATCAGACTACAACCGAAATGT</pcr_primer_p1>
		<pcr_primer_p2>GTATATACTTTTGACACAAACCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>TTATCAGACTACAACCGAAATGTGCTTTACAAGCGTTACATGGAAATGGTCATCACGTTTCCAATGTGGAAACCAGTAGTAGATCCCGAGTTTTCTGTGGTACTTAAAGATTTAGAACAATATCCTGTACAAATTGAGAAAGAGTATCAAATTAATTTTGTGAATCATATAAATCTTCAAAATAATTTAAGAAATGGAGAAGATATCAAAAAAGGTTTGTGTCAAAAGTATATAC</canonical_amplicon>
		<polymorphic_amplicon>TTATCAGACTACAACCGAAATGTGCTTTACAAGCGTTACATGGAAATGGTCATCACGTTTCCAATGTGGAAACCAGTAGTAGATCCCGAGTTTTCTGTGGTACTTAAAGATTTAGAACAATATCCTGTACAAATTGAGAAAGAGTATCAAATTAATTTTGTGRATCATATAAATCTTCAAAATAATTTAAGAAATGGAGAAGATATCAAAAAAGGTTTGTGTCAAAAGTATATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9693</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>6130</contig_pos>
        <strand>+</strand>
        <context>TGGAAAAAAA[C/T]TTGTTTCGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAAGTAGCAACGGTGTGTTCGCGATGTCGTTTTGGAATGGAAAAAAA</left_flank>
        <right_flank>TTGTTTCGATGGTTATGATTATCAATTACCTTCAGATTTTTTCATTAATG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGGTTAGATAAAGCAACAAAATGAATACAAAATATAAAGAAACGGCTGAATGAATCTTATGTTTTTGTTGTGAACAGACGAGGAGGATAAGAAATGAAACGGATTAATGAGTGATATCGTTACGTCGATCAACGATACATGCCCATAAACAATCAAAGCGTCTTTTGAATCCAGTCTTTCGGATGTTTTGAAATTCCGAAGCGGGACAAAATGTCCAATTGATCATAAAGTCAGAATATACTATATCTGAAGATCTCTTCTAATCTTTTAAGGACATTTAGTTTTCGTCTGTGTCAGATACGATAACCGTCTCGAAAATCAATGATGTCATTACATCCAATTTTAGAGAGATGTCACAAGGAAAAGATGATACCGTATCTCTTAAAAAAAAGTACTTTTCTTTTTTTCCATGTTCTCAAATATCAGATACCAAAAGATAATGTTAATGAAAAAAGTAGCAACGGTGTGTTCGCGATGTCGTTTTGGAATGGAAAAAAACTTGTTTCGATGGTTATGATTATCAATTACCTTCAGATTTTTTCATTAATGACAGTCTGTGACCAAACATTGTATGAACAGATTAACACTTGAGCATTTCGTAACAAGACCAAAAAAGGACACATGCGTAATTTCCGCTGGACGATGAGCACAAGAATCGGTTTACGATATCAGTGAATTCGAGAAGTGCACATATGCAACATCTGGTGCAAAGAAGACCATGATCAGCACCAGATTTTTATTGGAAAGCTATTTTTCGAGTTAGGCTTCTAAATTATATGACCCCTCATGATATAATGTTATGAAAAGTTGTAATTAGAAGGAGTAAAACCAACTAAAATAAGAAGGATAAGTTTGGAGAAACATGTATATACAGCTGGCTGGTTCGCGTTCGGCGCAATTTACCGTAAAACCTTTAATATAGCGCCATGGCGTTCTATTTTTCAAAGGGGTGTTTTGGGTTGATGCGAGGTAACAAAACTTGATTTTTTACTTATTTAA</canonical>
            <polymorphic>CGGGTTAGATAAAGCAACAAAATGAATACAAAATATAAAGAAACGGCTGAATGAATCTTATGTTTTTGTTGTGAACAGACGAGGAGGATAAGAAATGAAACGGATTAATGAGTGATATCGTTACGTCGATCAACGATACATGCCCATAAACAATCAAAGCGTCTTTTGAATCCAGTCTTTCGGATGTTTTGAAATTCCGAAGCGGGACAAAATGTCCAATTGATCATAAAGTCAGAATATACTATATCTGAAGATCTCTTCTAATCTTTTAAGGACATTTAGTTTTCGTCTGTGTCAGATACGATAACCGTCTCGAAAATCAATGATGTCATTACATCCAATTTTAGAGAGATGTCACAAGGAAAAGATGATACCGTATCTCTTAAAAAAAAGTACTTTTCTTTTTTTCCATGTTCTCAAATATCAGATACCAAAAGATAATGTTAATGAAAAAAGTAGCAACGGTGTGTTCGCGATGTCGTTTTGGAATGGAAAAAAAYTTGTTTCGATGGTTATGATTATCAATTACCTTCAGATTTTTTCATTAATGACAGTCTGTGACCAAACATTGTATGAACAGATTAACACTTGAGCATTTCGTAACAAGACCAAAAAAGGACACATGCGTAATTTCCGCTGGACGATGAGCACAAGAATCGGTTTACGATATCAGTGAATTCGAGAAGTGCACATATGCAACATCTGGTGCAAAGAAGACCATGATCAGCACCAGATTTTTATTGGAAAGCTATTTTTCGAGTTAGGCTTCTAAATTATATGACCCCTCATGATATAATGTTATGAAAAGTTGTAATTAGAAGGAGTAAAACCAACTAAAATAAGAAGGATAAGTTTGGAGAAACATGTATATACAGCTGGCTGGTTCGCGTTCGGCGCAATTTACCGTAAAACCTTTAATATAGCGCCATGGCGTTCTATTTTTCAAAGGGGTGTTTTGGGTTGATGCGAGGTAACAAAACTTGATTTTTTACTTATTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGTCACAAGGAAAAGATGATA</pcr_primer_p1>
		<pcr_primer_p2>GAAATGCTCAAGTGTTAATCTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATGTCACAAGGAAAAGATGATACCGTATCTCTTAAAAAAAAGTACTTTTCTTTTTTTCCATGTTCTCAAATATCAGATACCAAAAGATAATGTTAATGAAAAAAGTAGCAACGGTGTGTTCGCGATGTCGTTTTGGAATGGAAAAAAACTTGTTTCGATGGTTATGATTATCAATTACCTTCAGATTTTTTCATTAATGACAGTCTGTGACCAAACATTGTATGAACAGATTAACACTTGAGCATTTC</canonical_amplicon>
		<polymorphic_amplicon>GATGTCACAAGGAAAAGATGATACCGTATCTCTTAAAAAAAAGTACTTTTCTTTTTTTCCATGTTCTCAAATATCAGATACCAAAAGATAATGTTAATGAAAAAAGTAGCAACGGTGTGTTCGCGATGTCGTTTTGGAATGGAAAAAAAYTTGTTTCGATGGTTATGATTATCAATTACCTTCAGATTTTTTCATTAATGACAGTCTGTGACCAAACATTGTATGAACAGATTAACACTTGAGCATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9694</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>29515</contig_pos>
        <strand>+</strand>
        <context>CGGTATACAG[A/G]ACTGTGTAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTGATTGGAATTCGGTAAAATTTGAACCTCGGCGAAATGCGGTATACAG</left_flank>
        <right_flank>ACTGTGTAAAAGAGGTTTATTTGTCATAATCCGTACAATACATATTCGAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAAGTGTTTCCAGTGGTGCCCGTTGAAAAGTATGAACTGGAAGTGGATGGTTTGAAAACAGTCGAACGAAACGAAGAAGAGTCATAGTGAACATATGAGTGACTAGAACTGAAAACTACAAAACTGGAATCCCAAGCATATTTGAGATCATACCTGGAATGGAATTTACCACCCCCTCTGGATCTGGAACCTCCCCGCGAGCCTCCTCTAGCACCTCCACCACCCCTTCCTCCACTTCTTGCACTGCTCCTATCGACAAAAAATAAGAACAGAAGAAAAGGAATAATCGGTGAGATGTTCATCTGAAAAGGAAGAAAACACAGTCTGTCAGTTATGTTGCCATCTTCATTTCGTTTTCGTTCGATAGGGACTGTGTAAAATTAGGAGACAAATACTTTCCAACAAATTGTTGTTTGTTTTTTGACCTGTCGTCAGCTGGCCTTTCTGTGTGATTGGAATTCGGTAAAATTTGAACCTCGGCGAAATGCGGTATACAGAACTGTGTAAAAGAGGTTTATTTGTCATAATCCGTACAATACATATTCGAGCAGAACATTTATTTTCAAGCACAATAAAACACACCCATCACCAAAACGAACAGCATTGCAAAGCATCCCATTCTGAAAACCAACTATTAGAGTTTTAATTAAATACCGTAAAACAAGTATTAGAAGGGCGCCCGCACTGTCAAGTCTGAGGTCAATTAATTTAATTCCTATGCAAGATGTCGAAAAGTAGTCAACTGATAAAACGTTGGTGACATTATGATCTACAATTTATCAGTTGATAAATTTTTCATATCTTGAACAGAAACGGAGATGCATTGGCTTAAAGTTGAAAGTTGGGGGCCCTTATATTACAGGTTTTACGGGAAATTAATCCCATACGTAATAAGAAACCCAGTAATGTTATTGCAACATTTGGTCCCACAGCATTCATCCCATTTACTGCATTCAAAAACAAGTGCGGTGGGGTTGGTTCCATTAGAAAATCTCGTA</canonical>
            <polymorphic>TATAAGTGTTTCCAGTGGTGCCCGTTGAAAAGTATGAACTGGAAGTGGATGGTTTGAAAACAGTCGAACGAAACGAAGAAGAGTCATAGTGAACATATGAGTGACTAGAACTGAAAACTACAAAACTGGAATCCCAAGCATATTTGAGATCATACCTGGAATGGAATTTACCACCCCCTCTGGATCTGGAACCTCCCCGCGAGCCTCCTCTAGCACCTCCACCACCCCTTCCTCCACTTCTTGCACTGCTCCTATCGACAAAAAATAAGAACAGAAGAAAAGGAATAATCGGTGAGATGTTCATCTGAAAAGGAAGAAAACACAGTCTGTCAGTTATGTTGCCATCTTCATTTCGTTTTCGTTCGATAGGGACTGTGTAAAATTAGGAGACAAATACTTTCCAACAAATTGTTGTTTGTTTTTTGACCTGTCGTCAGCTGGCCTTTCTGTGTGATTGGAATTCGGTAAAATTTGAACCTCGGCGAAATGCGGTATACAGRACTGTGTAAAAGAGGTTTATTTGTCATAATCCGTACAATACATATTCGAGCAGAACATTTATTTTCAAGCACAATAAAACACACCCATCACCAAAACGAACAGCATTGCAAAGCATCCCATTCTGAAAACCAACTATTAGAGTTTTAATTAAATACCGTAAAACAAGTATTAGAAGGGCGCCCGCACTGTCAAGTCTGAGGTCAATTAATTTAATTCCTATGCAAGATGTCGAAAAGTAGTCAACTGATAAAACGTTGGTGACATTATGATCTACAATTTATCAGTTGATAAATTTTTCATATCTTGAACAGAAACGGAGATGCATTGGCTTAAAGTTGAAAGTTGGGGGCCCTTATATTACAGGTTTTACGGGAAATTAATCCCATACGTAATAAGAAACCCAGTAATGTTATTGCAACATTTGGTCCCACAGCATTCATCCCATTTACTGCATTCAAAAACAAGTGCGGTGGGGTTGGTTCCATTAGAAAATCTCGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAACACAGTCTGTCAGTTATG</pcr_primer_p1>
		<pcr_primer_p2>AATAAATGTTCTGCTCGAATATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGAAAACACAGTCTGTCAGTTATGTTGCCATCTTCATTTCGTTTTCGTTCGATAGGGACTGTGTAAAATTAGGAGACAAATACTTTCCAACAAATTGTTGTTTGTTTTTTGACCTGTCGTCAGCTGGCCTTTCTGTGTGATTGGAATTCGGTAAAATTTGAACCTCGGCGAAATGCGGTATACAGAACTGTGTAAAAGAGGTTTATTTGTCATAATCCGTACAATACATATTCGAGCAGAACATTTATT</canonical_amplicon>
		<polymorphic_amplicon>AGAAAACACAGTCTGTCAGTTATGTTGCCATCTTCATTTCGTTTTCGTTCGATAGGGACTGTGTAAAATTAGGAGACAAATACTTTCCAACAAATTGTTGTTTGTTTTTTGACCTGTCGTCAGCTGGCCTTTCTGTGTGATTGGAATTCGGTAAAATTTGAACCTCGGCGAAATGCGGTATACAGRACTGTGTAAAAGAGGTTTATTTGTCATAATCCGTACAATACATATTCGAGCAGAACATTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9695</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>29498</contig_pos>
        <strand>+</strand>
        <context>TGAACCTCGG[C/T]GAAATGCGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCAGCTGGCCTTTCTGTGTGATTGGAATTCGGTAAAATTTGAACCTCGG</left_flank>
        <right_flank>GAAATGCGGTATACAGAACTGTGTAAAAGAGGTTTATTTGTCATAATCCG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTGGTTGATTGATTATATAAGTGTTTCCAGTGGTGCCCGTTGAAAAGTATGAACTGGAAGTGGATGGTTTGAAAACAGTCGAACGAAACGAAGAAGAGTCATAGTGAACATATGAGTGACTAGAACTGAAAACTACAAAACTGGAATCCCAAGCATATTTGAGATCATACCTGGAATGGAATTTACCACCCCCTCTGGATCTGGAACCTCCCCGCGAGCCTCCTCTAGCACCTCCACCACCCCTTCCTCCACTTCTTGCACTGCTCCTATCGACAAAAAATAAGAACAGAAGAAAAGGAATAATCGGTGAGATGTTCATCTGAAAAGGAAGAAAACACAGTCTGTCAGTTATGTTGCCATCTTCATTTCGTTTTCGTTCGATAGGGACTGTGTAAAATTAGGAGACAAATACTTTCCAACAAATTGTTGTTTGTTTTTTGACCTGTCGTCAGCTGGCCTTTCTGTGTGATTGGAATTCGGTAAAATTTGAACCTCGGCGAAATGCGGTATACAGAACTGTGTAAAAGAGGTTTATTTGTCATAATCCGTACAATACATATTCGAGCAGAACATTTATTTTCAAGCACAATAAAACACACCCATCACCAAAACGAACAGCATTGCAAAGCATCCCATTCTGAAAACCAACTATTAGAGTTTTAATTAAATACCGTAAAACAAGTATTAGAAGGGCGCCCGCACTGTCAAGTCTGAGGTCAATTAATTTAATTCCTATGCAAGATGTCGAAAAGTAGTCAACTGATAAAACGTTGGTGACATTATGATCTACAATTTATCAGTTGATAAATTTTTCATATCTTGAACAGAAACGGAGATGCATTGGCTTAAAGTTGAAAGTTGGGGGCCCTTATATTACAGGTTTTACGGGAAATTAATCCCATACGTAATAAGAAACCCAGTAATGTTATTGCAACATTTGGTCCCACAGCATTCATCCCATTTACTGCATTCAAAAACAAGTGCGGTGGGGTTGGTTC</canonical>
            <polymorphic>TGCTGGTTGATTGATTATATAAGTGTTTCCAGTGGTGCCCGTTGAAAAGTATGAACTGGAAGTGGATGGTTTGAAAACAGTCGAACGAAACGAAGAAGAGTCATAGTGAACATATGAGTGACTAGAACTGAAAACTACAAAACTGGAATCCCAAGCATATTTGAGATCATACCTGGAATGGAATTTACCACCCCCTCTGGATCTGGAACCTCCCCGCGAGCCTCCTCTAGCACCTCCACCACCCCTTCCTCCACTTCTTGCACTGCTCCTATCGACAAAAAATAAGAACAGAAGAAAAGGAATAATCGGTGAGATGTTCATCTGAAAAGGAAGAAAACACAGTCTGTCAGTTATGTTGCCATCTTCATTTCGTTTTCGTTCGATAGGGACTGTGTAAAATTAGGAGACAAATACTTTCCAACAAATTGTTGTTTGTTTTTTGACCTGTCGTCAGCTGGCCTTTCTGTGTGATTGGAATTCGGTAAAATTTGAACCTCGGYGAAATGCGGTATACAGAACTGTGTAAAAGAGGTTTATTTGTCATAATCCGTACAATACATATTCGAGCAGAACATTTATTTTCAAGCACAATAAAACACACCCATCACCAAAACGAACAGCATTGCAAAGCATCCCATTCTGAAAACCAACTATTAGAGTTTTAATTAAATACCGTAAAACAAGTATTAGAAGGGCGCCCGCACTGTCAAGTCTGAGGTCAATTAATTTAATTCCTATGCAAGATGTCGAAAAGTAGTCAACTGATAAAACGTTGGTGACATTATGATCTACAATTTATCAGTTGATAAATTTTTCATATCTTGAACAGAAACGGAGATGCATTGGCTTAAAGTTGAAAGTTGGGGGCCCTTATATTACAGGTTTTACGGGAAATTAATCCCATACGTAATAAGAAACCCAGTAATGTTATTGCAACATTTGGTCCCACAGCATTCATCCCATTTACTGCATTCAAAAACAAGTGCGGTGGGGTTGGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAACACAGTCTGTCAGTTATG</pcr_primer_p1>
		<pcr_primer_p2>AATAAATGTTCTGCTCGAATATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGAAAACACAGTCTGTCAGTTATGTTGCCATCTTCATTTCGTTTTCGTTCGATAGGGACTGTGTAAAATTAGGAGACAAATACTTTCCAACAAATTGTTGTTTGTTTTTTGACCTGTCGTCAGCTGGCCTTTCTGTGTGATTGGAATTCGGTAAAATTTGAACCTCGGCGAAATGCGGTATACAGAACTGTGTAAAAGAGGTTTATTTGTCATAATCCGTACAATACATATTCGAGCAGAACATTTATT</canonical_amplicon>
		<polymorphic_amplicon>AGAAAACACAGTCTGTCAGTTATGTTGCCATCTTCATTTCGTTTTCGTTCGATAGGGACTGTGTAAAATTAGGAGACAAATACTTTCCAACAAATTGTTGTTTGTTTTTTGACCTGTCGTCAGCTGGCCTTTCTGTGTGATTGGAATTCGGTAAAATTTGAACCTCGGYGAAATGCGGTATACAGAACTGTGTAAAAGAGGTTTATTTGTCATAATCCGTACAATACATATTCGAGCAGAACATTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9696</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>40765</contig_pos>
        <strand>+</strand>
        <context>GAAACTTGCG[A/G]AAATAGCCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTTGTCTCTTCAATTGTTTGTTGCGGCTTTGACAATTCGAAACTTGCG</left_flank>
        <right_flank>AAATAGCCTTTCTCTCCAAGTTTTCTGTCATTTCTCTGATCACGTTCTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAGAAAATCAACTAACCTCGTCGTCCTTCAGCTGGGTAAGGATCTGTGGTGCCTGAACTCTCTGCCGTTCTTCTTCCTGCTTACGAATGACAATGTTCTGAGAAGCGGCTCTCTCGTGAAGTTCCTTAACTAGCTGTTGAACTTGTTGTTGCTTAGTCATCATCTCTTGAACAGTCTTGGTAAAAGTTTCATCCTTCGTGAATCTGGATGCATCTTCCAATCGTCTGGTCTGAGCCTCCACAGTCTGATGGATTTCGTTGACCTTCTTCACAAGTGTTTCCGATTCTTGAATTGTCTTCGGTGCCTTATCAACTAATCGAATAATCTCGATAGTCTCTTCTTGCCACATCTGTATCTCTTCTATAATCTTTTTCAGTATTTGAAGTTCTTGTCTTTCTTCTGGAGTCAAGGTAATCTGGGTTTGTTCGAGACTTGTCAGTTCGATGGTCTTTGTCTCTTCAATTGTTTGTTGCGGCTTTGACAATTCGAAACTTGCGAAAATAGCCTTTCTCTCCAAGTTTTCTGTCATTTCTCTGATCACGTTCTGTTGCTCAACAGCTCTAGCAATCTGTGTCTTGACTGCGATATCTTTGGCTTTGGATACAACCTCTTCGATTTTTGGCTGTTGTACTTCAATTGCCTCTTTGACAAGCTTCACCTTCTCTTGGAGTTCTTCACTTTCCTATCAAAATTTTGATTATTATTTCCACTCAAATGCACTTTTAAAACTCACCTGAACAGTTTTCATTGGAGTACTATCGAACATCTTGATGATCTCGACCATTTCTTCCTGCCACATTTGAATGTGTTCCGTGACTTTCACCAACTTTTGTTGCTCCAATTTCTCTTCCAGCTCAACAGTGAGATGCTTCAATTGCTCTTGAACATGTTCGACCTCTTCCATTTTTTGTACAAATTCAGGTACTGAAATTTCAAACTTCATAATAATGGATATAAAGAGTAAATCACCTACCTTGCGACATTTTCTTAACTTCTTG</canonical>
            <polymorphic>ACCAGAAAATCAACTAACCTCGTCGTCCTTCAGCTGGGTAAGGATCTGTGGTGCCTGAACTCTCTGCCGTTCTTCTTCCTGCTTACGAATGACAATGTTCTGAGAAGCGGCTCTCTCGTGAAGTTCCTTAACTAGCTGTTGAACTTGTTGTTGCTTAGTCATCATCTCTTGAACAGTCTTGGTAAAAGTTTCATCCTTCGTGAATCTGGATGCATCTTCCAATCGTCTGGTCTGAGCCTCCACAGTCTGATGGATTTCGTTGACCTTCTTCACAAGTGTTTCCGATTCTTGAATTGTCTTCGGTGCCTTATCAACTAATCGAATAATCTCGATAGTCTCTTCTTGCCACATCTGTATCTCTTCTATAATCTTTTTCAGTATTTGAAGTTCTTGTCTTTCTTCTGGAGTCAAGGTAATCTGGGTTTGTTCGAGACTTGTCAGTTCGATGGTCTTTGTCTCTTCAATTGTTTGTTGCGGCTTTGACAATTCGAAACTTGCGRAAATAGCCTTTCTCTCCAAGTTTTCTGTCATTTCTCTGATCACGTTCTGTTGCTCAACAGCTCTAGCAATCTGTGTCTTGACTGCGATATCTTTGGCTTTGGATACAACCTCTTCGATTTTTGGCTGTTGTACTTCAATTGCCTCTTTGACAAGCTTCACCTTCTCTTGGAGTTCTTCACTTTCCTATCAAAATTTTGATTATTATTTCCACTCAAATGCACTTTTAAAACTCACCTGAACAGTTTTCATTGGAGTACTATCGAACATCTTGATGATCTCGACCATTTCTTCCTGCCACATTTGAATGTGTTCCGTGACTTTCACCAACTTTTGTTGCTCCAATTTCTCTTCCAGCTCAACAGTGAGATGCTTCAATTGCTCTTGAACATGTTCGACCTCTTCCATTTTTTGTACAAATTCAGGTACTGAAATTTCAAACTTCATAATAATGGATATAAAGAGTAAATCACCTACCTTGCGACATTTTCTTAACTTCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTGGAGTCAAGGTAATCTG</pcr_primer_p1>
		<pcr_primer_p2>AAAGAGGCAATTGAAGTACAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCTGGAGTCAAGGTAATCTGGGTTTGTTCGAGACTTGTCAGTTCGATGGTCTTTGTCTCTTCAATTGTTTGTTGCGGCTTTGACAATTCGAAACTTGCGAAAATAGCCTTTCTCTCCAAGTTTTCTGTCATTTCTCTGATCACGTTCTGTTGCTCAACAGCTCTAGCAATCTGTGTCTTGACTGCGATATCTTTGGCTTTGGATACAACCTCTTCGATTTTTGGCTGTTGTACTTCAATTGCCTCTTT</canonical_amplicon>
		<polymorphic_amplicon>CTTCTGGAGTCAAGGTAATCTGGGTTTGTTCGAGACTTGTCAGTTCGATGGTCTTTGTCTCTTCAATTGTTTGTTGCGGCTTTGACAATTCGAAACTTGCGRAAATAGCCTTTCTCTCCAAGTTTTCTGTCATTTCTCTGATCACGTTCTGTTGCTCAACAGCTCTAGCAATCTGTGTCTTGACTGCGATATCTTTGGCTTTGGATACAACCTCTTCGATTTTTGGCTGTTGTACTTCAATTGCCTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9697</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>42148</contig_pos>
        <strand>+</strand>
        <context>AAAGTTTTCA[C/T]AATAAAAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCTTCCATCACACTCTCCACTTTTGTAGTAGAGTTCTGAAAAGTTTTCA</left_flank>
        <right_flank>AATAAAAAGATTAATAAGAATACGAGCGAACCTTATCCATCTGCCATTCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAATTTTCCGTCTGACGTGTTCAAATTGTTCCTGATTATTTGATTGCGTAGTGACGACTTGATTCATATTTCTAATGATTTCCACCATTTCCTCTTGCCAGATTTGAACATCTTCAACTATTTTCAGAAGAGAGGCCAACTCAACTTTTTGGCTCAATTGATCCAGACGAGTCTTGATGTAGTCATTCTTATCAATTAATACATTGATTCGGCTGATCTGTTCCTCGTTCTTGTTCTCTTCTTTCAACGTTTCAAGAGTGGTTTTGTGCATATCAGCGGCGTTTTTGAAAGAAGAAATTCTCTTTTGGGTCTCTTCCACTTCCTATATAAAGTTTCAGGTTTTAAATGCTTCAAATTAAAGCTAGGGAAAATGTACCTCTTTCTTGGTGATACTGGAATTATCAACTTTACCAATGAACTCCAACACATCCGTTTGCCACATCTGAATCTCTTCCATCACACTCTCCACTTTTGTAGTAGAGTTCTGAAAAGTTTTCATAATAAAAAGATTAATAAGAATACGAGCGAACCTTATCCATCTGCCATTCTGTCCATTTGTGTTGAACGTACTTGAATCGATTCTCATGATCAGTGATCATATTTCTAACTGCTTCTTGAGCCCTTTGAATGTTCAACCACTCGTCTGACTTTCCAATTTGGGTCGCATTAGAAATAAATTTCTCTCCTGAAGTTCTAAATATAGATTCGCATATGGATTTCCACAAACCTTGATGTTTCTCCTGACTCAATGTCTCTAAAATCATCTGGAACACATTTGAAATTTGTGCAGCAACCTTTTCGTTGGTATACTCTTGATTATTTTCCAGGAGAGTTTGAAGTGCATCGAACGATCCTTCAAGATCTTTTCCAAACTTGTGAACTTGTTCGTAAGTGGTTCCGATCTGAATACGGTTTTCTAGGATGTCCTTGATCTTCTCATAATTCTTGACGAATTCTGTCAATAGCTGTTCTTCTTCTGGAGACATTTGGGGTTTCTTT</canonical>
            <polymorphic>TCAATTTTCCGTCTGACGTGTTCAAATTGTTCCTGATTATTTGATTGCGTAGTGACGACTTGATTCATATTTCTAATGATTTCCACCATTTCCTCTTGCCAGATTTGAACATCTTCAACTATTTTCAGAAGAGAGGCCAACTCAACTTTTTGGCTCAATTGATCCAGACGAGTCTTGATGTAGTCATTCTTATCAATTAATACATTGATTCGGCTGATCTGTTCCTCGTTCTTGTTCTCTTCTTTCAACGTTTCAAGAGTGGTTTTGTGCATATCAGCGGCGTTTTTGAAAGAAGAAATTCTCTTTTGGGTCTCTTCCACTTCCTATATAAAGTTTCAGGTTTTAAATGCTTCAAATTAAAGCTAGGGAAAATGTACCTCTTTCTTGGTGATACTGGAATTATCAACTTTACCAATGAACTCCAACACATCCGTTTGCCACATCTGAATCTCTTCCATCACACTCTCCACTTTTGTAGTAGAGTTCTGAAAAGTTTTCAYAATAAAAAGATTAATAAGAATACGAGCGAACCTTATCCATCTGCCATTCTGTCCATTTGTGTTGAACGTACTTGAATCGATTCTCATGATCAGTGATCATATTTCTAACTGCTTCTTGAGCCCTTTGAATGTTCAACCACTCGTCTGACTTTCCAATTTGGGTCGCATTAGAAATAAATTTCTCTCCTGAAGTTCTAAATATAGATTCGCATATGGATTTCCACAAACCTTGATGTTTCTCCTGACTCAATGTCTCTAAAATCATCTGGAACACATTTGAAATTTGTGCAGCAACCTTTTCGTTGGTATACTCTTGATTATTTTCCAGGAGAGTTTGAAGTGCATCGAACGATCCTTCAAGATCTTTTCCAAACTTGTGAACTTGTTCGTAAGTGGTTCCGATCTGAATACGGTTTTCTAGGATGTCCTTGATCTTCTCATAATTCTTGACGAATTCTGTCAATAGCTGTTCTTCTTCTGGAGACATTTGGGGTTTCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGTTTTAAATGCTTCAAATTA</pcr_primer_p1>
		<pcr_primer_p2>ATTCAAGTACGTTCAACACAAAT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CAGGTTTTAAATGCTTCAAATTAAAGCTAGGGAAAATGTACCTCTTTCTTGGTGATACTGGAATTATCAACTTTACCAATGAACTCCAACACATCCGTTTGCCACATCTGAATCTCTTCCATCACACTCTCCACTTTTGTAGTAGAGTTCTGAAAAGTTTTCATAATAAAAAGATTAATAAGAATACGAGCGAACCTTATCCATCTGCCATTCTGTCCATTTGTGTTGAACGTACTTGAAT</canonical_amplicon>
		<polymorphic_amplicon>CAGGTTTTAAATGCTTCAAATTAAAGCTAGGGAAAATGTACCTCTTTCTTGGTGATACTGGAATTATCAACTTTACCAATGAACTCCAACACATCCGTTTGCCACATCTGAATCTCTTCCATCACACTCTCCACTTTTGTAGTAGAGTTCTGAAAAGTTTTCAYAATAAAAAGATTAATAAGAATACGAGCGAACCTTATCCATCTGCCATTCTGTCCATTTGTGTTGAACGTACTTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9698</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>42074</contig_pos>
        <strand>+</strand>
        <context>TGAACTCCAA[C/T]ACATCCGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCTCTTTCTTGGTGATACTGGAATTATCAACTTTACCAATGAACTCCAA</left_flank>
        <right_flank>ACATCCGTTTGCCACATCTGAATCTCTTCCATCACACTCTCCACTTTTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATACTTACTCTGGGAAAGTGTCTTACAAGCCTCCAAATGCTCACTCTTCTTGTCAACTTCAACTTTCAAATCTTCAATTTTCCGTCTGACGTGTTCAAATTGTTCCTGATTATTTGATTGCGTAGTGACGACTTGATTCATATTTCTAATGATTTCCACCATTTCCTCTTGCCAGATTTGAACATCTTCAACTATTTTCAGAAGAGAGGCCAACTCAACTTTTTGGCTCAATTGATCCAGACGAGTCTTGATGTAGTCATTCTTATCAATTAATACATTGATTCGGCTGATCTGTTCCTCGTTCTTGTTCTCTTCTTTCAACGTTTCAAGAGTGGTTTTGTGCATATCAGCGGCGTTTTTGAAAGAAGAAATTCTCTTTTGGGTCTCTTCCACTTCCTATATAAAGTTTCAGGTTTTAAATGCTTCAAATTAAAGCTAGGGAAAATGTACCTCTTTCTTGGTGATACTGGAATTATCAACTTTACCAATGAACTCCAACACATCCGTTTGCCACATCTGAATCTCTTCCATCACACTCTCCACTTTTGTAGTAGAGTTCTGAAAAGTTTTCATAATAAAAAGATTAATAAGAATACGAGCGAACCTTATCCATCTGCCATTCTGTCCATTTGTGTTGAACGTACTTGAATCGATTCTCATGATCAGTGATCATATTTCTAACTGCTTCTTGAGCCCTTTGAATGTTCAACCACTCGTCTGACTTTCCAATTTGGGTCGCATTAGAAATAAATTTCTCTCCTGAAGTTCTAAATATAGATTCGCATATGGATTTCCACAAACCTTGATGTTTCTCCTGACTCAATGTCTCTAAAATCATCTGGAACACATTTGAAATTTGTGCAGCAACCTTTTCGTTGGTATACTCTTGATTATTTTCCAGGAGAGTTTGAAGTGCATCGAACGATCCTTCAAGATCTTTTCCAAACTTGTGAACTTGTTCGTAAGTGGTTCCGATCTGAATACGGTTTTCTAGGATGT</canonical>
            <polymorphic>AATACTTACTCTGGGAAAGTGTCTTACAAGCCTCCAAATGCTCACTCTTCTTGTCAACTTCAACTTTCAAATCTTCAATTTTCCGTCTGACGTGTTCAAATTGTTCCTGATTATTTGATTGCGTAGTGACGACTTGATTCATATTTCTAATGATTTCCACCATTTCCTCTTGCCAGATTTGAACATCTTCAACTATTTTCAGAAGAGAGGCCAACTCAACTTTTTGGCTCAATTGATCCAGACGAGTCTTGATGTAGTCATTCTTATCAATTAATACATTGATTCGGCTGATCTGTTCCTCGTTCTTGTTCTCTTCTTTCAACGTTTCAAGAGTGGTTTTGTGCATATCAGCGGCGTTTTTGAAAGAAGAAATTCTCTTTTGGGTCTCTTCCACTTCCTATATAAAGTTTCAGGTTTTAAATGCTTCAAATTAAAGCTAGGGAAAATGTACCTCTTTCTTGGTGATACTGGAATTATCAACTTTACCAATGAACTCCAAYACATCCGTTTGCCACATCTGAATCTCTTCCATCACACTCTCCACTTTTGTAGTAGAGTTCTGAAAAGTTTTCATAATAAAAAGATTAATAAGAATACGAGCGAACCTTATCCATCTGCCATTCTGTCCATTTGTGTTGAACGTACTTGAATCGATTCTCATGATCAGTGATCATATTTCTAACTGCTTCTTGAGCCCTTTGAATGTTCAACCACTCGTCTGACTTTCCAATTTGGGTCGCATTAGAAATAAATTTCTCTCCTGAAGTTCTAAATATAGATTCGCATATGGATTTCCACAAACCTTGATGTTTCTCCTGACTCAATGTCTCTAAAATCATCTGGAACACATTTGAAATTTGTGCAGCAACCTTTTCGTTGGTATACTCTTGATTATTTTCCAGGAGAGTTTGAAGTGCATCGAACGATCCTTCAAGATCTTTTCCAAACTTGTGAACTTGTTCGTAAGTGGTTCCGATCTGAATACGGTTTTCTAGGATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>176 92 84 71 54 50 50 50 44 37 37 34 34 31 31 23 21 20 16 15 13 8 7 2</canonical_bands>
                <polymorphic_bands>176 92 84 71 54 50 50 50 50 44 37 34 34 31 31 23 21 20 16 15 8 7 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGGTTTTAAATGCTTCAAATTA</pcr_primer_p1>
		<pcr_primer_p2>ATTCAAGTACGTTCAACACAAAT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CAGGTTTTAAATGCTTCAAATTAAAGCTAGGGAAAATGTACCTCTTTCTTGGTGATACTGGAATTATCAACTTTACCAATGAACTCCAACACATCCGTTTGCCACATCTGAATCTCTTCCATCACACTCTCCACTTTTGTAGTAGAGTTCTGAAAAGTTTTCATAATAAAAAGATTAATAAGAATACGAGCGAACCTTATCCATCTGCCATTCTGTCCATTTGTGTTGAACGTACTTGAAT</canonical_amplicon>
		<polymorphic_amplicon>CAGGTTTTAAATGCTTCAAATTAAAGCTAGGGAAAATGTACCTCTTTCTTGGTGATACTGGAATTATCAACTTTACCAATGAACTCCAAYACATCCGTTTGCCACATCTGAATCTCTTCCATCACACTCTCCACTTTTGTAGTAGAGTTCTGAAAAGTTTTCATAATAAAAAGATTAATAAGAATACGAGCGAACCTTATCCATCTGCCATTCTGTCCATTTGTGTTGAACGTACTTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9699</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>42020</contig_pos>
        <strand>+</strand>
        <context>GCTAGGGAAA[A/G]TGTACCTCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCTATATAAAGTTTCAGGTTTTAAATGCTTCAAATTAAAGCTAGGGAAA</left_flank>
        <right_flank>TGTACCTCTTTCTTGGTGATACTGGAATTATCAACTTTACCAATGAACTC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGTCTGGAAAAAGAAAACAAACTGTGTTGAGTATCTAATCCTTTTCCAAAAAAATACTTACTCTGGGAAAGTGTCTTACAAGCCTCCAAATGCTCACTCTTCTTGTCAACTTCAACTTTCAAATCTTCAATTTTCCGTCTGACGTGTTCAAATTGTTCCTGATTATTTGATTGCGTAGTGACGACTTGATTCATATTTCTAATGATTTCCACCATTTCCTCTTGCCAGATTTGAACATCTTCAACTATTTTCAGAAGAGAGGCCAACTCAACTTTTTGGCTCAATTGATCCAGACGAGTCTTGATGTAGTCATTCTTATCAATTAATACATTGATTCGGCTGATCTGTTCCTCGTTCTTGTTCTCTTCTTTCAACGTTTCAAGAGTGGTTTTGTGCATATCAGCGGCGTTTTTGAAAGAAGAAATTCTCTTTTGGGTCTCTTCCACTTCCTATATAAAGTTTCAGGTTTTAAATGCTTCAAATTAAAGCTAGGGAAAATGTACCTCTTTCTTGGTGATACTGGAATTATCAACTTTACCAATGAACTCCAACACATCCGTTTGCCACATCTGAATCTCTTCCATCACACTCTCCACTTTTGTAGTAGAGTTCTGAAAAGTTTTCATAATAAAAAGATTAATAAGAATACGAGCGAACCTTATCCATCTGCCATTCTGTCCATTTGTGTTGAACGTACTTGAATCGATTCTCATGATCAGTGATCATATTTCTAACTGCTTCTTGAGCCCTTTGAATGTTCAACCACTCGTCTGACTTTCCAATTTGGGTCGCATTAGAAATAAATTTCTCTCCTGAAGTTCTAAATATAGATTCGCATATGGATTTCCACAAACCTTGATGTTTCTCCTGACTCAATGTCTCTAAAATCATCTGGAACACATTTGAAATTTGTGCAGCAACCTTTTCGTTGGTATACTCTTGATTATTTTCCAGGAGAGTTTGAAGTGCATCGAACGATCCTTCAAGATCTTTTCCAA</canonical>
            <polymorphic>TTCGTCTGGAAAAAGAAAACAAACTGTGTTGAGTATCTAATCCTTTTCCAAAAAAATACTTACTCTGGGAAAGTGTCTTACAAGCCTCCAAATGCTCACTCTTCTTGTCAACTTCAACTTTCAAATCTTCAATTTTCCGTCTGACGTGTTCAAATTGTTCCTGATTATTTGATTGCGTAGTGACGACTTGATTCATATTTCTAATGATTTCCACCATTTCCTCTTGCCAGATTTGAACATCTTCAACTATTTTCAGAAGAGAGGCCAACTCAACTTTTTGGCTCAATTGATCCAGACGAGTCTTGATGTAGTCATTCTTATCAATTAATACATTGATTCGGCTGATCTGTTCCTCGTTCTTGTTCTCTTCTTTCAACGTTTCAAGAGTGGTTTTGTGCATATCAGCGGCGTTTTTGAAAGAAGAAATTCTCTTTTGGGTCTCTTCCACTTCCTATATAAAGTTTCAGGTTTTAAATGCTTCAAATTAAAGCTAGGGAAARTGTACCTCTTTCTTGGTGATACTGGAATTATCAACTTTACCAATGAACTCCAACACATCCGTTTGCCACATCTGAATCTCTTCCATCACACTCTCCACTTTTGTAGTAGAGTTCTGAAAAGTTTTCATAATAAAAAGATTAATAAGAATACGAGCGAACCTTATCCATCTGCCATTCTGTCCATTTGTGTTGAACGTACTTGAATCGATTCTCATGATCAGTGATCATATTTCTAACTGCTTCTTGAGCCCTTTGAATGTTCAACCACTCGTCTGACTTTCCAATTTGGGTCGCATTAGAAATAAATTTCTCTCCTGAAGTTCTAAATATAGATTCGCATATGGATTTCCACAAACCTTGATGTTTCTCCTGACTCAATGTCTCTAAAATCATCTGGAACACATTTGAAATTTGTGCAGCAACCTTTTCGTTGGTATACTCTTGATTATTTTCCAGGAGAGTTTGAAGTGCATCGAACGATCCTTCAAGATCTTTTCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTCTCTTCTTTCAACGTTTC</pcr_primer_p1>
		<pcr_primer_p2>TCTACTACAAAAGTGGAGAGTGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTTCTCTTCTTTCAACGTTTCAAGAGTGGTTTTGTGCATATCAGCGGCGTTTTTGAAAGAAGAAATTCTCTTTTGGGTCTCTTCCACTTCCTATATAAAGTTTCAGGTTTTAAATGCTTCAAATTAAAGCTAGGGAAAATGTACCTCTTTCTTGGTGATACTGGAATTATCAACTTTACCAATGAACTCCAACACATCCGTTTGCCACATCTGAATCTCTTCCATCACACTCTCCACTTTTGTAGTAGA</canonical_amplicon>
		<polymorphic_amplicon>TGTTCTCTTCTTTCAACGTTTCAAGAGTGGTTTTGTGCATATCAGCGGCGTTTTTGAAAGAAGAAATTCTCTTTTGGGTCTCTTCCACTTCCTATATAAAGTTTCAGGTTTTAAATGCTTCAAATTAAAGCTAGGGAAARTGTACCTCTTTCTTGGTGATACTGGAATTATCAACTTTACCAATGAACTCCAACACATCCGTTTGCCACATCTGAATCTCTTCCATCACACTCTCCACTTTTGTAGTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9700</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>54636</contig_pos>
        <strand>+</strand>
        <context>ACGATAGTCA[A/T]AGCATAAAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCTGTCCTCAGTTTTCTTCGTCTAGACTTCGGATGTTTACGATAGTCA</left_flank>
        <right_flank>AGCATAAAGCCTTCAAGATTATTTTGCAAGTTTTTTGAAATTGGGATTAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTGCAAAAAAAAAGAATTGTAACCATTCTACTGTATTTCCGTAGTTTCGAAATAACCACTATCGAAATGACTGGTTTCGAAGTGACGCGGAGCCCAAAATTCTTTCTGCAATACTTCTTGTACGCGGAAGTTCCATTTTCTTCATAAAATATCAATTCTGCTATGATCTTGGAACTTTTGACATTCATAACATATCAGAAATCATACTGCGTACGTTTTGTTCTTCATTCTTCAACCTTCCTCTCTCTTCATATTCTCTGAACATGCATTTTAAGACAAACTCAATTTTCAGTTGTTGTTTGTCTGGAATGTGCAAGGTCGAACCTATGTGTCATTCACCAGGCACGCTCGTTCAAATTGAACTAATTTGGGAGGACAAGATTTTTGAAAAATCCTCGAACGATTTGAGTAATCGCCATTTATGACGTTTTCAGATGTGGGAGAATCTTTCTGTCCTCAGTTTTCTTCGTCTAGACTTCGGATGTTTACGATAGTCAAAGCATAAAGCCTTCAAGATTATTTTGCAAGTTTTTTGAAATTGGGATTAGTAGTTTACACATTTTCGCACGATCCTCCTAGCTTTTCAAACATGATTATTCGAATCATAAACTCTGCAAAATTCGAAACTTGAAAACTTCGAAAAGGAGAGGTCTCTTGACTTCGAAAGCATCCCTCCCTTCTTCTCCTACAACACTTTTCCAAAATCCGTTTTTTTCCTATGTCGTCGTCAGAAGCTCTCTCTTGAAGTGAGAAACCATCGAACACGTTGGTGGGAAAATTATGAATCAGTTATGAGGATAGATTTGGGAATTCTGAAGATCCCATTGTGTCCCTTTGATTATGTGTCCCTTTGATTAAAAAAACTAATTTTCTGGTTTCTCGAACTCTTGAACTAATTTGACTGCTGAAGTGGCAAAATTTTGTGAGCAAGTCCTAATTATACATCCAGAATCTCTGCATCTAGATTCTTCCTAATTCGAAGTTATCACGCAAGTCTT</canonical>
            <polymorphic>GCTTGCAAAAAAAAAGAATTGTAACCATTCTACTGTATTTCCGTAGTTTCGAAATAACCACTATCGAAATGACTGGTTTCGAAGTGACGCGGAGCCCAAAATTCTTTCTGCAATACTTCTTGTACGCGGAAGTTCCATTTTCTTCATAAAATATCAATTCTGCTATGATCTTGGAACTTTTGACATTCATAACATATCAGAAATCATACTGCGTACGTTTTGTTCTTCATTCTTCAACCTTCCTCTCTCTTCATATTCTCTGAACATGCATTTTAAGACAAACTCAATTTTCAGTTGTTGTTTGTCTGGAATGTGCAAGGTCGAACCTATGTGTCATTCACCAGGCACGCTCGTTCAAATTGAACTAATTTGGGAGGACAAGATTTTTGAAAAATCCTCGAACGATTTGAGTAATCGCCATTTATGACGTTTTCAGATGTGGGAGAATCTTTCTGTCCTCAGTTTTCTTCGTCTAGACTTCGGATGTTTACGATAGTCAWAGCATAAAGCCTTCAAGATTATTTTGCAAGTTTTTTGAAATTGGGATTAGTAGTTTACACATTTTCGCACGATCCTCCTAGCTTTTCAAACATGATTATTCGAATCATAAACTCTGCAAAATTCGAAACTTGAAAACTTCGAAAAGGAGAGGTCTCTTGACTTCGAAAGCATCCCTCCCTTCTTCTCCTACAACACTTTTCCAAAATCCGTTTTTTTCCTATGTCGTCGTCAGAAGCTCTCTCTTGAAGTGAGAAACCATCGAACACGTTGGTGGGAAAATTATGAATCAGTTATGAGGATAGATTTGGGAATTCTGAAGATCCCATTGTGTCCCTTTGATTATGTGTCCCTTTGATTAAAAAAACTAATTTTCTGGTTTCTCGAACTCTTGAACTAATTTGACTGCTGAAGTGGCAAAATTTTGTGAGCAAGTCCTAATTATACATCCAGAATCTCTGCATCTAGATTCTTCCTAATTCGAAGTTATCACGCAAGTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGAACTAATTTGGGAGGA</pcr_primer_p1>
		<pcr_primer_p2>TTCGAATAATCATGTTTGAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATTGAACTAATTTGGGAGGACAAGATTTTTGAAAAATCCTCGAACGATTTGAGTAATCGCCATTTATGACGTTTTCAGATGTGGGAGAATCTTTCTGTCCTCAGTTTTCTTCGTCTAGACTTCGGATGTTTACGATAGTCAAAGCATAAAGCCTTCAAGATTATTTTGCAAGTTTTTTGAAATTGGGATTAGTAGTTTACACATTTTCGCACGATCCTCCTAGCTTTTCAAACATGATTATTCGAA</canonical_amplicon>
		<polymorphic_amplicon>AATTGAACTAATTTGGGAGGACAAGATTTTTGAAAAATCCTCGAACGATTTGAGTAATCGCCATTTATGACGTTTTCAGATGTGGGAGAATCTTTCTGTCCTCAGTTTTCTTCGTCTAGACTTCGGATGTTTACGATAGTCAWAGCATAAAGCCTTCAAGATTATTTTGCAAGTTTTTTGAAATTGGGATTAGTAGTTTACACATTTTCGCACGATCCTCCTAGCTTTTCAAACATGATTATTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9701</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>54704</contig_pos>
        <strand>+</strand>
        <context>CACATTTTCG[C/T]ACGATCCTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTATTTTGCAAGTTTTTTGAAATTGGGATTAGTAGTTTACACATTTTCG</left_flank>
        <right_flank>ACGATCCTCCTAGCTTTTCAAACATGATTATTCGAATCATAAACTCTGCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGACTGGTTTCGAAGTGACGCGGAGCCCAAAATTCTTTCTGCAATACTTCTTGTACGCGGAAGTTCCATTTTCTTCATAAAATATCAATTCTGCTATGATCTTGGAACTTTTGACATTCATAACATATCAGAAATCATACTGCGTACGTTTTGTTCTTCATTCTTCAACCTTCCTCTCTCTTCATATTCTCTGAACATGCATTTTAAGACAAACTCAATTTTCAGTTGTTGTTTGTCTGGAATGTGCAAGGTCGAACCTATGTGTCATTCACCAGGCACGCTCGTTCAAATTGAACTAATTTGGGAGGACAAGATTTTTGAAAAATCCTCGAACGATTTGAGTAATCGCCATTTATGACGTTTTCAGATGTGGGAGAATCTTTCTGTCCTCAGTTTTCTTCGTCTAGACTTCGGATGTTTACGATAGTCAAAGCATAAAGCCTTCAAGATTATTTTGCAAGTTTTTTGAAATTGGGATTAGTAGTTTACACATTTTCGCACGATCCTCCTAGCTTTTCAAACATGATTATTCGAATCATAAACTCTGCAAAATTCGAAACTTGAAAACTTCGAAAAGGAGAGGTCTCTTGACTTCGAAAGCATCCCTCCCTTCTTCTCCTACAACACTTTTCCAAAATCCGTTTTTTTCCTATGTCGTCGTCAGAAGCTCTCTCTTGAAGTGAGAAACCATCGAACACGTTGGTGGGAAAATTATGAATCAGTTATGAGGATAGATTTGGGAATTCTGAAGATCCCATTGTGTCCCTTTGATTATGTGTCCCTTTGATTAAAAAAACTAATTTTCTGGTTTCTCGAACTCTTGAACTAATTTGACTGCTGAAGTGGCAAAATTTTGTGAGCAAGTCCTAATTATACATCCAGAATCTCTGCATCTAGATTCTTCCTAATTCGAAGTTATCACGCAAGTCTTCTTCATTGCCACGTTATAAAACCGAAACGGAGGATAACTGGAAAAAAAGAACTAGAGACCACATGTGA</canonical>
            <polymorphic>ATGACTGGTTTCGAAGTGACGCGGAGCCCAAAATTCTTTCTGCAATACTTCTTGTACGCGGAAGTTCCATTTTCTTCATAAAATATCAATTCTGCTATGATCTTGGAACTTTTGACATTCATAACATATCAGAAATCATACTGCGTACGTTTTGTTCTTCATTCTTCAACCTTCCTCTCTCTTCATATTCTCTGAACATGCATTTTAAGACAAACTCAATTTTCAGTTGTTGTTTGTCTGGAATGTGCAAGGTCGAACCTATGTGTCATTCACCAGGCACGCTCGTTCAAATTGAACTAATTTGGGAGGACAAGATTTTTGAAAAATCCTCGAACGATTTGAGTAATCGCCATTTATGACGTTTTCAGATGTGGGAGAATCTTTCTGTCCTCAGTTTTCTTCGTCTAGACTTCGGATGTTTACGATAGTCAAAGCATAAAGCCTTCAAGATTATTTTGCAAGTTTTTTGAAATTGGGATTAGTAGTTTACACATTTTCGYACGATCCTCCTAGCTTTTCAAACATGATTATTCGAATCATAAACTCTGCAAAATTCGAAACTTGAAAACTTCGAAAAGGAGAGGTCTCTTGACTTCGAAAGCATCCCTCCCTTCTTCTCCTACAACACTTTTCCAAAATCCGTTTTTTTCCTATGTCGTCGTCAGAAGCTCTCTCTTGAAGTGAGAAACCATCGAACACGTTGGTGGGAAAATTATGAATCAGTTATGAGGATAGATTTGGGAATTCTGAAGATCCCATTGTGTCCCTTTGATTATGTGTCCCTTTGATTAAAAAAACTAATTTTCTGGTTTCTCGAACTCTTGAACTAATTTGACTGCTGAAGTGGCAAAATTTTGTGAGCAAGTCCTAATTATACATCCAGAATCTCTGCATCTAGATTCTTCCTAATTCGAAGTTATCACGCAAGTCTTCTTCATTGCCACGTTATAAAACCGAAACGGAGGATAACTGGAAAAAAAGAACTAGAGACCACATGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>229 126 118 94 67 63 57 56 50 21 18 18 16 15 13 10 8 7 7 6 1</canonical_bands>
                <polymorphic_bands>229 136 118 94 67 63 57 56 50 21 18 18 16 15 13 8 7 7 6 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCATAAAGCCTTCAAGATTATT</pcr_primer_p1>
		<pcr_primer_p2>ACTTCAAGAGAGAGCTTCTGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCATAAAGCCTTCAAGATTATTTTGCAAGTTTTTTGAAATTGGGATTAGTAGTTTACACATTTTCGCACGATCCTCCTAGCTTTTCAAACATGATTATTCGAATCATAAACTCTGCAAAATTCGAAACTTGAAAACTTCGAAAAGGAGAGGTCTCTTGACTTCGAAAGCATCCCTCCCTTCTTCTCCTACAACACTTTTCCAAAATCCGTTTTTTTCCTATGTCGTCGTCAGAAGCTCTCTCTTGAAGT</canonical_amplicon>
		<polymorphic_amplicon>AGCATAAAGCCTTCAAGATTATTTTGCAAGTTTTTTGAAATTGGGATTAGTAGTTTACACATTTTCGYACGATCCTCCTAGCTTTTCAAACATGATTATTCGAATCATAAACTCTGCAAAATTCGAAACTTGAAAACTTCGAAAAGGAGAGGTCTCTTGACTTCGAAAGCATCCCTCCCTTCTTCTCCTACAACACTTTTCCAAAATCCGTTTTTTTCCTATGTCGTCGTCAGAAGCTCTCTCTTGAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9702</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>54782</contig_pos>
        <strand>+</strand>
        <context>ACTTCGAAAA[G/T]GAGAGGTCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTATTCGAATCATAAACTCTGCAAAATTCGAAACTTGAAAACTTCGAAAA</left_flank>
        <right_flank>GAGAGGTCTCTTGACTTCGAAAGCATCCCTCCCTTCTTCTCCTACAACAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAATATCAATTCTGCTATGATCTTGGAACTTTTGACATTCATAACATATCAGAAATCATACTGCGTACGTTTTGTTCTTCATTCTTCAACCTTCCTCTCTCTTCATATTCTCTGAACATGCATTTTAAGACAAACTCAATTTTCAGTTGTTGTTTGTCTGGAATGTGCAAGGTCGAACCTATGTGTCATTCACCAGGCACGCTCGTTCAAATTGAACTAATTTGGGAGGACAAGATTTTTGAAAAATCCTCGAACGATTTGAGTAATCGCCATTTATGACGTTTTCAGATGTGGGAGAATCTTTCTGTCCTCAGTTTTCTTCGTCTAGACTTCGGATGTTTACGATAGTCAAAGCATAAAGCCTTCAAGATTATTTTGCAAGTTTTTTGAAATTGGGATTAGTAGTTTACACATTTTCGCACGATCCTCCTAGCTTTTCAAACATGATTATTCGAATCATAAACTCTGCAAAATTCGAAACTTGAAAACTTCGAAAAGGAGAGGTCTCTTGACTTCGAAAGCATCCCTCCCTTCTTCTCCTACAACACTTTTCCAAAATCCGTTTTTTTCCTATGTCGTCGTCAGAAGCTCTCTCTTGAAGTGAGAAACCATCGAACACGTTGGTGGGAAAATTATGAATCAGTTATGAGGATAGATTTGGGAATTCTGAAGATCCCATTGTGTCCCTTTGATTATGTGTCCCTTTGATTAAAAAAACTAATTTTCTGGTTTCTCGAACTCTTGAACTAATTTGACTGCTGAAGTGGCAAAATTTTGTGAGCAAGTCCTAATTATACATCCAGAATCTCTGCATCTAGATTCTTCCTAATTCGAAGTTATCACGCAAGTCTTCTTCATTGCCACGTTATAAAACCGAAACGGAGGATAACTGGAAAAAAAGAACTAGAGACCACATGTGAGAATCTTCGGGTTGGTTAATTAGATAATCTCTGCCCGTCACACTTCTTGTATCTTTTTTTGGGTTCAAAGAAAATCTA</canonical>
            <polymorphic>TAAAATATCAATTCTGCTATGATCTTGGAACTTTTGACATTCATAACATATCAGAAATCATACTGCGTACGTTTTGTTCTTCATTCTTCAACCTTCCTCTCTCTTCATATTCTCTGAACATGCATTTTAAGACAAACTCAATTTTCAGTTGTTGTTTGTCTGGAATGTGCAAGGTCGAACCTATGTGTCATTCACCAGGCACGCTCGTTCAAATTGAACTAATTTGGGAGGACAAGATTTTTGAAAAATCCTCGAACGATTTGAGTAATCGCCATTTATGACGTTTTCAGATGTGGGAGAATCTTTCTGTCCTCAGTTTTCTTCGTCTAGACTTCGGATGTTTACGATAGTCAAAGCATAAAGCCTTCAAGATTATTTTGCAAGTTTTTTGAAATTGGGATTAGTAGTTTACACATTTTCGCACGATCCTCCTAGCTTTTCAAACATGATTATTCGAATCATAAACTCTGCAAAATTCGAAACTTGAAAACTTCGAAAAKGAGAGGTCTCTTGACTTCGAAAGCATCCCTCCCTTCTTCTCCTACAACACTTTTCCAAAATCCGTTTTTTTCCTATGTCGTCGTCAGAAGCTCTCTCTTGAAGTGAGAAACCATCGAACACGTTGGTGGGAAAATTATGAATCAGTTATGAGGATAGATTTGGGAATTCTGAAGATCCCATTGTGTCCCTTTGATTATGTGTCCCTTTGATTAAAAAAACTAATTTTCTGGTTTCTCGAACTCTTGAACTAATTTGACTGCTGAAGTGGCAAAATTTTGTGAGCAAGTCCTAATTATACATCCAGAATCTCTGCATCTAGATTCTTCCTAATTCGAAGTTATCACGCAAGTCTTCTTCATTGCCACGTTATAAAACCGAAACGGAGGATAACTGGAAAAAAAGAACTAGAGACCACATGTGAGAATCTTCGGGTTGGTTAATTAGATAATCTCTGCCCGTCACACTTCTTGTATCTTTTTTTGGGTTCAAAGAAAATCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCATAAAGCCTTCAAGATTATT</pcr_primer_p1>
		<pcr_primer_p2>ACTTCAAGAGAGAGCTTCTGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCATAAAGCCTTCAAGATTATTTTGCAAGTTTTTTGAAATTGGGATTAGTAGTTTACACATTTTCGCACGATCCTCCTAGCTTTTCAAACATGATTATTCGAATCATAAACTCTGCAAAATTCGAAACTTGAAAACTTCGAAAAGGAGAGGTCTCTTGACTTCGAAAGCATCCCTCCCTTCTTCTCCTACAACACTTTTCCAAAATCCGTTTTTTTCCTATGTCGTCGTCAGAAGCTCTCTCTTGAAGT</canonical_amplicon>
		<polymorphic_amplicon>AGCATAAAGCCTTCAAGATTATTTTGCAAGTTTTTTGAAATTGGGATTAGTAGTTTACACATTTTCGCACGATCCTCCTAGCTTTTCAAACATGATTATTCGAATCATAAACTCTGCAAAATTCGAAACTTGAAAACTTCGAAAAKGAGAGGTCTCTTGACTTCGAAAGCATCCCTCCCTTCTTCTCCTACAACACTTTTCCAAAATCCGTTTTTTTCCTATGTCGTCGTCAGAAGCTCTCTCTTGAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9703</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>54840</contig_pos>
        <strand>+</strand>
        <context>CACTTTTCCA[A/T]AATCCGTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCTTGACTTCGAAAGCATCCCTCCCTTCTTCTCCTACAACACTTTTCCA</left_flank>
        <right_flank>AATCCGTTTTTTTCCTATGTCGTCGTCAGAAGCTCTCTCTTGAAGTGAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATACTGCGTACGTTTTGTTCTTCATTCTTCAACCTTCCTCTCTCTTCATATTCTCTGAACATGCATTTTAAGACAAACTCAATTTTCAGTTGTTGTTTGTCTGGAATGTGCAAGGTCGAACCTATGTGTCATTCACCAGGCACGCTCGTTCAAATTGAACTAATTTGGGAGGACAAGATTTTTGAAAAATCCTCGAACGATTTGAGTAATCGCCATTTATGACGTTTTCAGATGTGGGAGAATCTTTCTGTCCTCAGTTTTCTTCGTCTAGACTTCGGATGTTTACGATAGTCAAAGCATAAAGCCTTCAAGATTATTTTGCAAGTTTTTTGAAATTGGGATTAGTAGTTTACACATTTTCGCACGATCCTCCTAGCTTTTCAAACATGATTATTCGAATCATAAACTCTGCAAAATTCGAAACTTGAAAACTTCGAAAAGGAGAGGTCTCTTGACTTCGAAAGCATCCCTCCCTTCTTCTCCTACAACACTTTTCCAAAATCCGTTTTTTTCCTATGTCGTCGTCAGAAGCTCTCTCTTGAAGTGAGAAACCATCGAACACGTTGGTGGGAAAATTATGAATCAGTTATGAGGATAGATTTGGGAATTCTGAAGATCCCATTGTGTCCCTTTGATTATGTGTCCCTTTGATTAAAAAAACTAATTTTCTGGTTTCTCGAACTCTTGAACTAATTTGACTGCTGAAGTGGCAAAATTTTGTGAGCAAGTCCTAATTATACATCCAGAATCTCTGCATCTAGATTCTTCCTAATTCGAAGTTATCACGCAAGTCTTCTTCATTGCCACGTTATAAAACCGAAACGGAGGATAACTGGAAAAAAAGAACTAGAGACCACATGTGAGAATCTTCGGGTTGGTTAATTAGATAATCTCTGCCCGTCACACTTCTTGTATCTTTTTTTGGGTTCAAAGAAAATCTAGTCTGTTTTTCTTTCATCTGATTTTTGTCTTTTTTTTCCGGGTCAGAGTTCCAGGAAT</canonical>
            <polymorphic>CATACTGCGTACGTTTTGTTCTTCATTCTTCAACCTTCCTCTCTCTTCATATTCTCTGAACATGCATTTTAAGACAAACTCAATTTTCAGTTGTTGTTTGTCTGGAATGTGCAAGGTCGAACCTATGTGTCATTCACCAGGCACGCTCGTTCAAATTGAACTAATTTGGGAGGACAAGATTTTTGAAAAATCCTCGAACGATTTGAGTAATCGCCATTTATGACGTTTTCAGATGTGGGAGAATCTTTCTGTCCTCAGTTTTCTTCGTCTAGACTTCGGATGTTTACGATAGTCAAAGCATAAAGCCTTCAAGATTATTTTGCAAGTTTTTTGAAATTGGGATTAGTAGTTTACACATTTTCGCACGATCCTCCTAGCTTTTCAAACATGATTATTCGAATCATAAACTCTGCAAAATTCGAAACTTGAAAACTTCGAAAAGGAGAGGTCTCTTGACTTCGAAAGCATCCCTCCCTTCTTCTCCTACAACACTTTTCCAWAATCCGTTTTTTTCCTATGTCGTCGTCAGAAGCTCTCTCTTGAAGTGAGAAACCATCGAACACGTTGGTGGGAAAATTATGAATCAGTTATGAGGATAGATTTGGGAATTCTGAAGATCCCATTGTGTCCCTTTGATTATGTGTCCCTTTGATTAAAAAAACTAATTTTCTGGTTTCTCGAACTCTTGAACTAATTTGACTGCTGAAGTGGCAAAATTTTGTGAGCAAGTCCTAATTATACATCCAGAATCTCTGCATCTAGATTCTTCCTAATTCGAAGTTATCACGCAAGTCTTCTTCATTGCCACGTTATAAAACCGAAACGGAGGATAACTGGAAAAAAAGAACTAGAGACCACATGTGAGAATCTTCGGGTTGGTTAATTAGATAATCTCTGCCCGTCACACTTCTTGTATCTTTTTTTGGGTTCAAAGAAAATCTAGTCTGTTTTTCTTTCATCTGATTTTTGTCTTTTTTTTCCGGGTCAGAGTTCCAGGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATTCGAAACTTGAAAACT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTAATCAAAGGGACACATAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAAAATTCGAAACTTGAAAACTTCGAAAAGGAGAGGTCTCTTGACTTCGAAAGCATCCCTCCCTTCTTCTCCTACAACACTTTTCCAAAATCCGTTTTTTTCCTATGTCGTCGTCAGAAGCTCTCTCTTGAAGTGAGAAACCATCGAACACGTTGGTGGGAAAATTATGAATCAGTTATGAGGATAGATTTGGGAATTCTGAAGATCCCATTGTGTCCCTTTGATTATGTGTCCCTTTGATTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CAAAATTCGAAACTTGAAAACTTCGAAAAGGAGAGGTCTCTTGACTTCGAAAGCATCCCTCCCTTCTTCTCCTACAACACTTTTCCAWAATCCGTTTTTTTCCTATGTCGTCGTCAGAAGCTCTCTCTTGAAGTGAGAAACCATCGAACACGTTGGTGGGAAAATTATGAATCAGTTATGAGGATAGATTTGGGAATTCTGAAGATCCCATTGTGTCCCTTTGATTATGTGTCCCTTTGATTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9704</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>80890</contig_pos>
        <strand>+</strand>
        <context>GTGAAAAATA[A/G]AAAAAGAGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCTTATGAATACTTTTTGCTATTTTTAGCTCCGGAAAGTGTGAAAAATA</left_flank>
        <right_flank>AAAAAGAGGGTGGTGGTATCAACAATTGAGGAAGTAGGGACACTCAGAGT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAACTGGAAAATATCAGCGAAAAAAAAATTGAATTGAATTTTTGCAGGAATGACAATTCAACAAGTAATTCCTTGACTAATTCGAATAGGAAAAAAATTCCACCGAAAGTAGAAGAAGCATTTGTCGAACTAGAAAAAGAAGAAGCTTCTCCTTCCTCCTCCTTCGTCACCTTTTACACCTTTTCACTCATAATTGTTTTCTTCTCCGAGACAGATGGGCACAGTTGATTGGTCGGTCAGTTTCTCGAGGCCGAAAAATGACTCTTTTTTTTCCCAAAAAAACTGTCCTTTATTTGTGTTACCGGATCGTGTGCCAGCAGCTAGCAGCTGACTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTATGTTTCATTTCCGTAATTGTCATAAAAAGTGCGACGCCAATATTATTATAACCACGGCGGTTATCTTGCTTATGAATACTTTTTGCTATTTTTAGCTCCGGAAAGTGTGAAAAATAGAAAAAGAGGGTGGTGGTATCAACAATTGAGGAAGTAGGGACACTCAGAGTCTGAGTATCCAGACCAAAGATTTTTCCAACGGAAATGAGAAAGGGACCCTTTTGGTCTTGTTTTCTGGGTTCTTATCGAGTTTCAATCAGACACGTTAACCGTCGTTTCGTCATCAACCAAGTGAGACTTGTCTTAGTAAATATTGTTGTCCTGAAAAAGTTTCCTCAGAAGTTTTCCTTTCGATGGTTATCGAAAATTCCTCAGATCTTGCAGTTTAGTGCAGAAATAGAAACCCAATCAAGTAGATTAGGTTCGTCAAAAAAAGTTAACTTCATTATGCCTCTTTCTCCTTTAAAACTTCCTTCTGGAAAATGTCAGTCCCCCGTCACAGGCATGAATCTGACAATTGGCTGCTGCTCATTATTTATGGCTCCTTTTCCTTTCAGAAAAAACAAAACATTTCCATTCGCTCCCTTCCTTTTCCTTCTTCCTCTTTAGTTTGTATCTAA</canonical>
            <polymorphic>GGAAACTGGAAAATATCAGCGAAAAAAAAATTGAATTGAATTTTTGCAGGAATGACAATTCAACAAGTAATTCCTTGACTAATTCGAATAGGAAAAAAATTCCACCGAAAGTAGAAGAAGCATTTGTCGAACTAGAAAAAGAAGAAGCTTCTCCTTCCTCCTCCTTCGTCACCTTTTACACCTTTTCACTCATAATTGTTTTCTTCTCCGAGACAGATGGGCACAGTTGATTGGTCGGTCAGTTTCTCGAGGCCGAAAAATGACTCTTTTTTTTCCCAAAAAAACTGTCCTTTATTTGTGTTACCGGATCGTGTGCCAGCAGCTAGCAGCTGACTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTATGTTTCATTTCCGTAATTGTCATAAAAAGTGCGACGCCAATATTATTATAACCACGGCGGTTATCTTGCTTATGAATACTTTTTGCTATTTTTAGCTCCGGAAAGTGTGAAAAATARAAAAAGAGGGTGGTGGTATCAACAATTGAGGAAGTAGGGACACTCAGAGTCTGAGTATCCAGACCAAAGATTTTTCCAACGGAAATGAGAAAGGGACCCTTTTGGTCTTGTTTTCTGGGTTCTTATCGAGTTTCAATCAGACACGTTAACCGTCGTTTCGTCATCAACCAAGTGAGACTTGTCTTAGTAAATATTGTTGTCCTGAAAAAGTTTCCTCAGAAGTTTTCCTTTCGATGGTTATCGAAAATTCCTCAGATCTTGCAGTTTAGTGCAGAAATAGAAACCCAATCAAGTAGATTAGGTTCGTCAAAAAAAGTTAACTTCATTATGCCTCTTTCTCCTTTAAAACTTCCTTCTGGAAAATGTCAGTCCCCCGTCACAGGCATGAATCTGACAATTGGCTGCTGCTCATTATTTATGGCTCCTTTTCCTTTCAGAAAAAACAAAACATTTCCATTCGCTCCCTTCCTTTTCCTTCTTCCTCTTTAGTTTGTATCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCGTAATTGTCATAAAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCTGATTGAAACTCGATAAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCCGTAATTGTCATAAAAAGTGCGACGCCAATATTATTATAACCACGGCGGTTATCTTGCTTATGAATACTTTTTGCTATTTTTAGCTCCGGAAAGTGTGAAAAATAGAAAAAGAGGGTGGTGGTATCAACAATTGAGGAAGTAGGGACACTCAGAGTCTGAGTATCCAGACCAAAGATTTTTCCAACGGAAATGAGAAAGGGACCCTTTTGGTCTTGTTTTCTGGGTTCTTATCGAGTTTCAATCAGA</canonical_amplicon>
		<polymorphic_amplicon>TTCCGTAATTGTCATAAAAAGTGCGACGCCAATATTATTATAACCACGGCGGTTATCTTGCTTATGAATACTTTTTGCTATTTTTAGCTCCGGAAAGTGTGAAAAATARAAAAAGAGGGTGGTGGTATCAACAATTGAGGAAGTAGGGACACTCAGAGTCTGAGTATCCAGACCAAAGATTTTTCCAACGGAAATGAGAAAGGGACCCTTTTGGTCTTGTTTTCTGGGTTCTTATCGAGTTTCAATCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9705</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>84476</contig_pos>
        <strand>+</strand>
        <context>TGAAATTAAA[C/T]AATTCCAACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACTTGTTTTGTTGTTTTCTTTTAATGATATGATGATGTTTGAAATTAAA</left_flank>
        <right_flank>AATTCCAACATTAAACGACAGGAGACACCTCCTTCCTTACAGCCTAACTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGATCTCTGTCTGAAGATTTCGAATTCATTTAAAGCCACTTGTTGGGGGAAAAACAGAGAACCATGCTATAAGTAAAATGGGAAAAGGAAATGGAGCACTCAGAAGTCGTTCACCATGACGGCTTTTATTTATTGCACTACTTTTACTGAGAAACTCAAAACGGGAAGTTCCGTCCTCAACAATTTTAAATAGGTCCCGTAAAGGCTGTTGGGTCGTTGGTGGGTTGCCGTGGACCAAACTGTCCGTTCTTAGGAAAATTAAGCTCCGCCAACCAAAAACTTCTAGAGCCGTTATGCCGCCGAACCCTAACCGTCCCAGAACCAAAGCTTTGGGTCCGGCTCTCTTTGCTTTTATAGAGCAAAACAAGATGAGCTGCAAAAAATAGGTCGGACGAGTGATGAATTAGGCCACTTGTCCAAATAGAAATACATAGAGCTATGAACCTTAACTTGTTTTGTTGTTTTCTTTTAATGATATGATGATGTTTGAAATTAAACAATTCCAACATTAAACGACAGGAGACACCTCCTTCCTTACAGCCTAACTATAAAAATAAGAGATGTTTGTTTTGTTGACCTCCCATCTCAAAAACCGAATTTAACGGTTATGACTCAGTGGAATCTAGATGCTCTCTCCGCTTCTTTTCTCTCCACTTAAAAAGTTATTGCATTCATAAAAATTGTGCTTTGTTCTCTCAAGTGAGTGGATCAATCATGAGCATGTTTAGGATTTGCATGGCTTCCTTCTTCCGTTGCAAATATTCATCCATCCTGCCGTCACCTTTTGGAAAGCAAGAGATTATAGCCACCTCCCTCTCTAACACCTTTCCTTATTTAGCAAATCTAATCTGTTCCAATTTCCCTCCCCACGCAACATATCTATTTTCATGTTCCTAATCTTGTCACATATACTATAGATGTACATCCTTCAGTTCTTCTCTTTCTTCCATATAGTTTCACTGAAACTACACATTATTCGTCGAACCATCACAATTGTC</canonical>
            <polymorphic>TTTGATCTCTGTCTGAAGATTTCGAATTCATTTAAAGCCACTTGTTGGGGGAAAAACAGAGAACCATGCTATAAGTAAAATGGGAAAAGGAAATGGAGCACTCAGAAGTCGTTCACCATGACGGCTTTTATTTATTGCACTACTTTTACTGAGAAACTCAAAACGGGAAGTTCCGTCCTCAACAATTTTAAATAGGTCCCGTAAAGGCTGTTGGGTCGTTGGTGGGTTGCCGTGGACCAAACTGTCCGTTCTTAGGAAAATTAAGCTCCGCCAACCAAAAACTTCTAGAGCCGTTATGCCGCCGAACCCTAACCGTCCCAGAACCAAAGCTTTGGGTCCGGCTCTCTTTGCTTTTATAGAGCAAAACAAGATGAGCTGCAAAAAATAGGTCGGACGAGTGATGAATTAGGCCACTTGTCCAAATAGAAATACATAGAGCTATGAACCTTAACTTGTTTTGTTGTTTTCTTTTAATGATATGATGATGTTTGAAATTAAAYAATTCCAACATTAAACGACAGGAGACACCTCCTTCCTTACAGCCTAACTATAAAAATAAGAGATGTTTGTTTTGTTGACCTCCCATCTCAAAAACCGAATTTAACGGTTATGACTCAGTGGAATCTAGATGCTCTCTCCGCTTCTTTTCTCTCCACTTAAAAAGTTATTGCATTCATAAAAATTGTGCTTTGTTCTCTCAAGTGAGTGGATCAATCATGAGCATGTTTAGGATTTGCATGGCTTCCTTCTTCCGTTGCAAATATTCATCCATCCTGCCGTCACCTTTTGGAAAGCAAGAGATTATAGCCACCTCCCTCTCTAACACCTTTCCTTATTTAGCAAATCTAATCTGTTCCAATTTCCCTCCCCACGCAACATATCTATTTTCATGTTCCTAATCTTGTCACATATACTATAGATGTACATCCTTCAGTTCTTCTCTTTCTTCCATATAGTTTCACTGAAACTACACATTATTCGTCGAACCATCACAATTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTAACTTGTTTTGTTGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>AGAACAAAGCACAATTTTTATGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCTTAACTTGTTTTGTTGTTTTCTTTTAATGATATGATGATGTTTGAAATTAAACAATTCCAACATTAAACGACAGGAGACACCTCCTTCCTTACAGCCTAACTATAAAAATAAGAGATGTTTGTTTTGTTGACCTCCCATCTCAAAAACCGAATTTAACGGTTATGACTCAGTGGAATCTAGATGCTCTCTCCGCTTCTTTTCTCTCCACTTAAAAAGTTATTGCATTCATAAAAATTGTGCTTTGTTCT</canonical_amplicon>
		<polymorphic_amplicon>CCTTAACTTGTTTTGTTGTTTTCTTTTAATGATATGATGATGTTTGAAATTAAAYAATTCCAACATTAAACGACAGGAGACACCTCCTTCCTTACAGCCTAACTATAAAAATAAGAGATGTTTGTTTTGTTGACCTCCCATCTCAAAAACCGAATTTAACGGTTATGACTCAGTGGAATCTAGATGCTCTCTCCGCTTCTTTTCTCTCCACTTAAAAAGTTATTGCATTCATAAAAATTGTGCTTTGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9706</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>84379</contig_pos>
        <strand>+</strand>
        <context>GACGAGTGAT[A/G]AATTAGGCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTATAGAGCAAAACAAGATGAGCTGCAAAAAATAGGTCGGACGAGTGAT</left_flank>
        <right_flank>AATTAGGCCACTTGTCCAAATAGAAATACATAGAGCTATGAACCTTAACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTCCTCATTTAAAATTCATTGTCATGATCAGGTGGTGTTCAAAAAACCTATTCTTAGATTTTGCGAAACACCTTTCTTTCGTAGTTTTTTTTGACTTTGATCTCTGTCTGAAGATTTCGAATTCATTTAAAGCCACTTGTTGGGGGAAAAACAGAGAACCATGCTATAAGTAAAATGGGAAAAGGAAATGGAGCACTCAGAAGTCGTTCACCATGACGGCTTTTATTTATTGCACTACTTTTACTGAGAAACTCAAAACGGGAAGTTCCGTCCTCAACAATTTTAAATAGGTCCCGTAAAGGCTGTTGGGTCGTTGGTGGGTTGCCGTGGACCAAACTGTCCGTTCTTAGGAAAATTAAGCTCCGCCAACCAAAAACTTCTAGAGCCGTTATGCCGCCGAACCCTAACCGTCCCAGAACCAAAGCTTTGGGTCCGGCTCTCTTTGCTTTTATAGAGCAAAACAAGATGAGCTGCAAAAAATAGGTCGGACGAGTGATGAATTAGGCCACTTGTCCAAATAGAAATACATAGAGCTATGAACCTTAACTTGTTTTGTTGTTTTCTTTTAATGATATGATGATGTTTGAAATTAAACAATTCCAACATTAAACGACAGGAGACACCTCCTTCCTTACAGCCTAACTATAAAAATAAGAGATGTTTGTTTTGTTGACCTCCCATCTCAAAAACCGAATTTAACGGTTATGACTCAGTGGAATCTAGATGCTCTCTCCGCTTCTTTTCTCTCCACTTAAAAAGTTATTGCATTCATAAAAATTGTGCTTTGTTCTCTCAAGTGAGTGGATCAATCATGAGCATGTTTAGGATTTGCATGGCTTCCTTCTTCCGTTGCAAATATTCATCCATCCTGCCGTCACCTTTTGGAAAGCAAGAGATTATAGCCACCTCCCTCTCTAACACCTTTCCTTATTTAGCAAATCTAATCTGTTCCAATTTCCCTCCCCACGCAACATATCTATTTTCATGTTCCTAATCTT</canonical>
            <polymorphic>TGTTCCTCATTTAAAATTCATTGTCATGATCAGGTGGTGTTCAAAAAACCTATTCTTAGATTTTGCGAAACACCTTTCTTTCGTAGTTTTTTTTGACTTTGATCTCTGTCTGAAGATTTCGAATTCATTTAAAGCCACTTGTTGGGGGAAAAACAGAGAACCATGCTATAAGTAAAATGGGAAAAGGAAATGGAGCACTCAGAAGTCGTTCACCATGACGGCTTTTATTTATTGCACTACTTTTACTGAGAAACTCAAAACGGGAAGTTCCGTCCTCAACAATTTTAAATAGGTCCCGTAAAGGCTGTTGGGTCGTTGGTGGGTTGCCGTGGACCAAACTGTCCGTTCTTAGGAAAATTAAGCTCCGCCAACCAAAAACTTCTAGAGCCGTTATGCCGCCGAACCCTAACCGTCCCAGAACCAAAGCTTTGGGTCCGGCTCTCTTTGCTTTTATAGAGCAAAACAAGATGAGCTGCAAAAAATAGGTCGGACGAGTGATRAATTAGGCCACTTGTCCAAATAGAAATACATAGAGCTATGAACCTTAACTTGTTTTGTTGTTTTCTTTTAATGATATGATGATGTTTGAAATTAAACAATTCCAACATTAAACGACAGGAGACACCTCCTTCCTTACAGCCTAACTATAAAAATAAGAGATGTTTGTTTTGTTGACCTCCCATCTCAAAAACCGAATTTAACGGTTATGACTCAGTGGAATCTAGATGCTCTCTCCGCTTCTTTTCTCTCCACTTAAAAAGTTATTGCATTCATAAAAATTGTGCTTTGTTCTCTCAAGTGAGTGGATCAATCATGAGCATGTTTAGGATTTGCATGGCTTCCTTCTTCCGTTGCAAATATTCATCCATCCTGCCGTCACCTTTTGGAAAGCAAGAGATTATAGCCACCTCCCTCTCTAACACCTTTCCTTATTTAGCAAATCTAATCTGTTCCAATTTCCCTCCCCACGCAACATATCTATTTTCATGTTCCTAATCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTTTTATAGAGCAAAACAAGA</pcr_primer_p1>
		<pcr_primer_p2>GAGGTCAACAAAACAAACATCT</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>TGCTTTTATAGAGCAAAACAAGATGAGCTGCAAAAAATAGGTCGGACGAGTGATGAATTAGGCCACTTGTCCAAATAGAAATACATAGAGCTATGAACCTTAACTTGTTTTGTTGTTTTCTTTTAATGATATGATGATGTTTGAAATTAAACAATTCCAACATTAAACGACAGGAGACACCTCCTTCCTTACAGCCTAACTATAAAAATAAGAGATGTTTGTTTTGTTGACCTC</canonical_amplicon>
		<polymorphic_amplicon>TGCTTTTATAGAGCAAAACAAGATGAGCTGCAAAAAATAGGTCGGACGAGTGATRAATTAGGCCACTTGTCCAAATAGAAATACATAGAGCTATGAACCTTAACTTGTTTTGTTGTTTTCTTTTAATGATATGATGATGTTTGAAATTAAACAATTCCAACATTAAACGACAGGAGACACCTCCTTCCTTACAGCCTAACTATAAAAATAAGAGATGTTTGTTTTGTTGACCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9707</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>84359</contig_pos>
        <strand>+</strand>
        <context>GAGCTGCAAA[A/G]AATAGGTCGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGGTCCGGCTCTCTTTGCTTTTATAGAGCAAAACAAGATGAGCTGCAAA</left_flank>
        <right_flank>AATAGGTCGGACGAGTGATGAATTAGGCCACTTGTCCAAATAGAAATACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTTCTGAAACGGGGAAGTGTTCCTCATTTAAAATTCATTGTCATGATCAGGTGGTGTTCAAAAAACCTATTCTTAGATTTTGCGAAACACCTTTCTTTCGTAGTTTTTTTTGACTTTGATCTCTGTCTGAAGATTTCGAATTCATTTAAAGCCACTTGTTGGGGGAAAAACAGAGAACCATGCTATAAGTAAAATGGGAAAAGGAAATGGAGCACTCAGAAGTCGTTCACCATGACGGCTTTTATTTATTGCACTACTTTTACTGAGAAACTCAAAACGGGAAGTTCCGTCCTCAACAATTTTAAATAGGTCCCGTAAAGGCTGTTGGGTCGTTGGTGGGTTGCCGTGGACCAAACTGTCCGTTCTTAGGAAAATTAAGCTCCGCCAACCAAAAACTTCTAGAGCCGTTATGCCGCCGAACCCTAACCGTCCCAGAACCAAAGCTTTGGGTCCGGCTCTCTTTGCTTTTATAGAGCAAAACAAGATGAGCTGCAAAAAATAGGTCGGACGAGTGATGAATTAGGCCACTTGTCCAAATAGAAATACATAGAGCTATGAACCTTAACTTGTTTTGTTGTTTTCTTTTAATGATATGATGATGTTTGAAATTAAACAATTCCAACATTAAACGACAGGAGACACCTCCTTCCTTACAGCCTAACTATAAAAATAAGAGATGTTTGTTTTGTTGACCTCCCATCTCAAAAACCGAATTTAACGGTTATGACTCAGTGGAATCTAGATGCTCTCTCCGCTTCTTTTCTCTCCACTTAAAAAGTTATTGCATTCATAAAAATTGTGCTTTGTTCTCTCAAGTGAGTGGATCAATCATGAGCATGTTTAGGATTTGCATGGCTTCCTTCTTCCGTTGCAAATATTCATCCATCCTGCCGTCACCTTTTGGAAAGCAAGAGATTATAGCCACCTCCCTCTCTAACACCTTTCCTTATTTAGCAAATCTAATCTGTTCCAATTTCCCTCCCCACGCAACATATCT</canonical>
            <polymorphic>ATTCTTCTGAAACGGGGAAGTGTTCCTCATTTAAAATTCATTGTCATGATCAGGTGGTGTTCAAAAAACCTATTCTTAGATTTTGCGAAACACCTTTCTTTCGTAGTTTTTTTTGACTTTGATCTCTGTCTGAAGATTTCGAATTCATTTAAAGCCACTTGTTGGGGGAAAAACAGAGAACCATGCTATAAGTAAAATGGGAAAAGGAAATGGAGCACTCAGAAGTCGTTCACCATGACGGCTTTTATTTATTGCACTACTTTTACTGAGAAACTCAAAACGGGAAGTTCCGTCCTCAACAATTTTAAATAGGTCCCGTAAAGGCTGTTGGGTCGTTGGTGGGTTGCCGTGGACCAAACTGTCCGTTCTTAGGAAAATTAAGCTCCGCCAACCAAAAACTTCTAGAGCCGTTATGCCGCCGAACCCTAACCGTCCCAGAACCAAAGCTTTGGGTCCGGCTCTCTTTGCTTTTATAGAGCAAAACAAGATGAGCTGCAAARAATAGGTCGGACGAGTGATGAATTAGGCCACTTGTCCAAATAGAAATACATAGAGCTATGAACCTTAACTTGTTTTGTTGTTTTCTTTTAATGATATGATGATGTTTGAAATTAAACAATTCCAACATTAAACGACAGGAGACACCTCCTTCCTTACAGCCTAACTATAAAAATAAGAGATGTTTGTTTTGTTGACCTCCCATCTCAAAAACCGAATTTAACGGTTATGACTCAGTGGAATCTAGATGCTCTCTCCGCTTCTTTTCTCTCCACTTAAAAAGTTATTGCATTCATAAAAATTGTGCTTTGTTCTCTCAAGTGAGTGGATCAATCATGAGCATGTTTAGGATTTGCATGGCTTCCTTCTTCCGTTGCAAATATTCATCCATCCTGCCGTCACCTTTTGGAAAGCAAGAGATTATAGCCACCTCCCTCTCTAACACCTTTCCTTATTTAGCAAATCTAATCTGTTCCAATTTCCCTCCCCACGCAACATATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTAAATAGGTCCCGTAAAG</pcr_primer_p1>
		<pcr_primer_p2>GCTCTATGTATTTCTATTTGGACA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AATTTTAAATAGGTCCCGTAAAGGCTGTTGGGTCGTTGGTGGGTTGCCGTGGACCAAACTGTCCGTTCTTAGGAAAATTAAGCTCCGCCAACCAAAAACTTCTAGAGCCGTTATGCCGCCGAACCCTAACCGTCCCAGAACCAAAGCTTTGGGTCCGGCTCTCTTTGCTTTTATAGAGCAAAACAAGATGAGCTGCAAAAAATAGGTCGGACGAGTGATGAATTAGGCCACTTGTCCAAATAGAAATACATAGAGC</canonical_amplicon>
		<polymorphic_amplicon>AATTTTAAATAGGTCCCGTAAAGGCTGTTGGGTCGTTGGTGGGTTGCCGTGGACCAAACTGTCCGTTCTTAGGAAAATTAAGCTCCGCCAACCAAAAACTTCTAGAGCCGTTATGCCGCCGAACCCTAACCGTCCCAGAACCAAAGCTTTGGGTCCGGCTCTCTTTGCTTTTATAGAGCAAAACAAGATGAGCTGCAAARAATAGGTCGGACGAGTGATGAATTAGGCCACTTGTCCAAATAGAAATACATAGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9708</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>84316</contig_pos>
        <strand>+</strand>
        <context>CTTTGGGTCC[C/G]GCTCTCTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCCGTTATGCCGCCGAACCCTAACCGTCCCAGAACCAAAGCTTTGGGTCC</left_flank>
        <right_flank>GCTCTCTTTGCTTTTATAGAGCAAAACAAGATGAGCTGCAAAAAATAGGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATATTGCTCGTCCTTTCTTCTCACGAGGACATTCTGGCGTCATTCTTCTGAAACGGGGAAGTGTTCCTCATTTAAAATTCATTGTCATGATCAGGTGGTGTTCAAAAAACCTATTCTTAGATTTTGCGAAACACCTTTCTTTCGTAGTTTTTTTTGACTTTGATCTCTGTCTGAAGATTTCGAATTCATTTAAAGCCACTTGTTGGGGGAAAAACAGAGAACCATGCTATAAGTAAAATGGGAAAAGGAAATGGAGCACTCAGAAGTCGTTCACCATGACGGCTTTTATTTATTGCACTACTTTTACTGAGAAACTCAAAACGGGAAGTTCCGTCCTCAACAATTTTAAATAGGTCCCGTAAAGGCTGTTGGGTCGTTGGTGGGTTGCCGTGGACCAAACTGTCCGTTCTTAGGAAAATTAAGCTCCGCCAACCAAAAACTTCTAGAGCCGTTATGCCGCCGAACCCTAACCGTCCCAGAACCAAAGCTTTGGGTCCGGCTCTCTTTGCTTTTATAGAGCAAAACAAGATGAGCTGCAAAAAATAGGTCGGACGAGTGATGAATTAGGCCACTTGTCCAAATAGAAATACATAGAGCTATGAACCTTAACTTGTTTTGTTGTTTTCTTTTAATGATATGATGATGTTTGAAATTAAACAATTCCAACATTAAACGACAGGAGACACCTCCTTCCTTACAGCCTAACTATAAAAATAAGAGATGTTTGTTTTGTTGACCTCCCATCTCAAAAACCGAATTTAACGGTTATGACTCAGTGGAATCTAGATGCTCTCTCCGCTTCTTTTCTCTCCACTTAAAAAGTTATTGCATTCATAAAAATTGTGCTTTGTTCTCTCAAGTGAGTGGATCAATCATGAGCATGTTTAGGATTTGCATGGCTTCCTTCTTCCGTTGCAAATATTCATCCATCCTGCCGTCACCTTTTGGAAAGCAAGAGATTATAGCCACCTCCCTCTCTAACACCTTTCCTTATTTAG</canonical>
            <polymorphic>GAATATTGCTCGTCCTTTCTTCTCACGAGGACATTCTGGCGTCATTCTTCTGAAACGGGGAAGTGTTCCTCATTTAAAATTCATTGTCATGATCAGGTGGTGTTCAAAAAACCTATTCTTAGATTTTGCGAAACACCTTTCTTTCGTAGTTTTTTTTGACTTTGATCTCTGTCTGAAGATTTCGAATTCATTTAAAGCCACTTGTTGGGGGAAAAACAGAGAACCATGCTATAAGTAAAATGGGAAAAGGAAATGGAGCACTCAGAAGTCGTTCACCATGACGGCTTTTATTTATTGCACTACTTTTACTGAGAAACTCAAAACGGGAAGTTCCGTCCTCAACAATTTTAAATAGGTCCCGTAAAGGCTGTTGGGTCGTTGGTGGGTTGCCGTGGACCAAACTGTCCGTTCTTAGGAAAATTAAGCTCCGCCAACCAAAAACTTCTAGAGCCGTTATGCCGCCGAACCCTAACCGTCCCAGAACCAAAGCTTTGGGTCCSGCTCTCTTTGCTTTTATAGAGCAAAACAAGATGAGCTGCAAAAAATAGGTCGGACGAGTGATGAATTAGGCCACTTGTCCAAATAGAAATACATAGAGCTATGAACCTTAACTTGTTTTGTTGTTTTCTTTTAATGATATGATGATGTTTGAAATTAAACAATTCCAACATTAAACGACAGGAGACACCTCCTTCCTTACAGCCTAACTATAAAAATAAGAGATGTTTGTTTTGTTGACCTCCCATCTCAAAAACCGAATTTAACGGTTATGACTCAGTGGAATCTAGATGCTCTCTCCGCTTCTTTTCTCTCCACTTAAAAAGTTATTGCATTCATAAAAATTGTGCTTTGTTCTCTCAAGTGAGTGGATCAATCATGAGCATGTTTAGGATTTGCATGGCTTCCTTCTTCCGTTGCAAATATTCATCCATCCTGCCGTCACCTTTTGGAAAGCAAGAGATTATAGCCACCTCCCTCTCTAACACCTTTCCTTATTTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>199 197 104 87 83 66 58 39 35 34 33 28 25 12</canonical_bands>
                <polymorphic_bands>199 197 104 87 83 66 58 46 39 35 33 28 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTTAAATAGGTCCCGTAAAG</pcr_primer_p1>
		<pcr_primer_p2>GCTCTATGTATTTCTATTTGGACA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AATTTTAAATAGGTCCCGTAAAGGCTGTTGGGTCGTTGGTGGGTTGCCGTGGACCAAACTGTCCGTTCTTAGGAAAATTAAGCTCCGCCAACCAAAAACTTCTAGAGCCGTTATGCCGCCGAACCCTAACCGTCCCAGAACCAAAGCTTTGGGTCCGGCTCTCTTTGCTTTTATAGAGCAAAACAAGATGAGCTGCAAAAAATAGGTCGGACGAGTGATGAATTAGGCCACTTGTCCAAATAGAAATACATAGAGC</canonical_amplicon>
		<polymorphic_amplicon>AATTTTAAATAGGTCCCGTAAAGGCTGTTGGGTCGTTGGTGGGTTGCCGTGGACCAAACTGTCCGTTCTTAGGAAAATTAAGCTCCGCCAACCAAAAACTTCTAGAGCCGTTATGCCGCCGAACCCTAACCGTCCCAGAACCAAAGCTTTGGGTCCSGCTCTCTTTGCTTTTATAGAGCAAAACAAGATGAGCTGCAAAAAATAGGTCGGACGAGTGATGAATTAGGCCACTTGTCCAAATAGAAATACATAGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9709</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>84284</contig_pos>
        <strand></strand>
        <context>gccgccgaac[C/A]ctaaccgtcc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AAATTAAGCTCCGCCAACCAAAAACTTCTAGAGCCGTTATGCCGCCGAAC</left_flank>
        <right_flank>CTAACCGTCCCAGAACCAAAGCTTTGGGTCCGGCTCTCTTTGCTTTTATA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAATGGCCACCACTTCTCTCATCTATCCTAGAATATTGCTCGTCCTTTCTTCTCACGAGGACATTCTGGCGTCATTCTTCTGAAACGGGGAAGTGTTCCTCATTTAAAATTCATTGTCATGATCAGGTGGTGTTCAAAAAACCTATTCTTAGATTTTGCGAAACACCTTTCTTTCGTAGTTTTTTTTGACTTTGATCTCTGTCTGAAGATTTCGAATTCATTTAAAGCCACTTGTTGGGGGAAAAACAGAGAACCATGCTATAAGTAAAATGGGAAAAGGAAATGGAGCACTCAGAAGTCGTTCACCATGACGGCTTTTATTTATTGCACTACTTTTACTGAGAAACTCAAAACGGGAAGTTCCGTCCTCAACAATTTTAAATAGGTCCCGTAAAGGCTGTTGGGTCGTTGGTGGGTTGCCGTGGACCAAACTGTCCGTTCTTAGGAAAATTAAGCTCCGCCAACCAAAAACTTCTAGAGCCGTTATGCCGCCGAACCCTAACCGTCCCAGAACCAAAGCTTTGGGTCCGGCTCTCTTTGCTTTTATAGAGCAAAACAAGATGAGCTGCAAAAAATAGGTCGGACGAGTGATGAATTAGGCCACTTGTCCAAATAGAAATACATAGAGCTATGAACCTTAACTTGTTTTGTTGTTTTCTTTTAATGATATGATGATGTTTGAAATTAAACAATTCCAACATTAAACGACAGGAGACACCTCCTTCCTTACAGCCTAACTATAAAAATAAGAGATGTTTGTTTTGTTGACCTCCCATCTCAAAAACCGAATTTAACGGTTATGACTCAGTGGAATCTAGATGCTCTCTCCGCTTCTTTTCTCTCCACTTAAAAAGTTATTGCATTCATAAAAATTGTGCTTTGTTCTCTCAAGTGAGTGGATCAATCATGAGCATGTTTAGGATTTGCATGGCTTCCTTCTTCCGTTGCAAATATTCATCCATCCTGCCGTCACCTTTTGGAAAGCAAGAGATTATAGC</canonical>
            <polymorphic>TTAAATGGCCACCACTTCTCTCATCTATCCTAGAATATTGCTCGTCCTTTCTTCTCACGAGGACATTCTGGCGTCATTCTTCTGAAACGGGGAAGTGTTCCTCATTTAAAATTCATTGTCATGATCAGGTGGTGTTCAAAAAACCTATTCTTAGATTTTGCGAAACACCTTTCTTTCGTAGTTTTTTTTGACTTTGATCTCTGTCTGAAGATTTCGAATTCATTTAAAGCCACTTGTTGGGGGAAAAACAGAGAACCATGCTATAAGTAAAATGGGAAAAGGAAATGGAGCACTCAGAAGTCGTTCACCATGACGGCTTTTATTTATTGCACTACTTTTACTGAGAAACTCAAAACGGGAAGTTCCGTCCTCAACAATTTTAAATAGGTCCCGTAAAGGCTGTTGGGTCGTTGGTGGGTTGCCGTGGACCAAACTGTCCGTTCTTAGGAAAATTAAGCTCCGCCAACCAAAAACTTCTAGAGCCGTTATGCCGCCGAACMCTAACCGTCCCAGAACCAAAGCTTTGGGTCCGGCTCTCTTTGCTTTTATAGAGCAAAACAAGATGAGCTGCAAAAAATAGGTCGGACGAGTGATGAATTAGGCCACTTGTCCAAATAGAAATACATAGAGCTATGAACCTTAACTTGTTTTGTTGTTTTCTTTTAATGATATGATGATGTTTGAAATTAAACAATTCCAACATTAAACGACAGGAGACACCTCCTTCCTTACAGCCTAACTATAAAAATAAGAGATGTTTGTTTTGTTGACCTCCCATCTCAAAAACCGAATTTAACGGTTATGACTCAGTGGAATCTAGATGCTCTCTCCGCTTCTTTTCTCTCCACTTAAAAAGTTATTGCATTCATAAAAATTGTGCTTTGTTCTCTCAAGTGAGTGGATCAATCATGAGCATGTTTAGGATTTGCATGGCTTCCTTCTTCCGTTGCAAATATTCATCCATCCTGCCGTCACCTTTTGGAAAGCAAGAGATTATAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCTTTTATTTATTGCACTACTTT</pcr_primer_p1>
		<pcr_primer_p2>GCTCATCTTGTTTTGCTCTATAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GGCTTTTATTTATTGCACTACTTTTACTGAGAAACTCAAAACGGGAAGTTCCGTCCTCAACAATTTTAAATAGGTCCCGTAAAGGCTGTTGGGTCGTTGGTGGGTTGCCGTGGACCAAACTGTCCGTTCTTAGGAAAATTAAGCTCCGCCAACCAAAAACTTCTAGAGCCGTTATGCCGCCGAACCCTAACCGTCCCAGAACCAAAGCTTTGGGTCCGGCTCTCTTTGCTTTTATAGAGCAAAACAAGATGAGC</canonical_amplicon>
		<polymorphic_amplicon>GGCTTTTATTTATTGCACTACTTTTACTGAGAAACTCAAAACGGGAAGTTCCGTCCTCAACAATTTTAAATAGGTCCCGTAAAGGCTGTTGGGTCGTTGGTGGGTTGCCGTGGACCAAACTGTCCGTTCTTAGGAAAATTAAGCTCCGCCAACCAAAAACTTCTAGAGCCGTTATGCCGCCGAACMCTAACCGTCCCAGAACCAAAGCTTTGGGTCCGGCTCTCTTTGCTTTTATAGAGCAAAACAAGATGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9710</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>84261</contig_pos>
        <strand></strand>
        <context>ccaaaaactt[C/T]tagagccgtt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACCAAACTGTCCGTTCTTAGGAAAATTAAGCTCCGCCAACCAAAAACTT</left_flank>
        <right_flank>TAGAGCCGTTATGCCGCCGAACCCTAACCGTCCCAGAACCAAAGCTTTGG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCCATTATTCATCGTCTAAATTTAAATGGCCACCACTTCTCTCATCTATCCTAGAATATTGCTCGTCCTTTCTTCTCACGAGGACATTCTGGCGTCATTCTTCTGAAACGGGGAAGTGTTCCTCATTTAAAATTCATTGTCATGATCAGGTGGTGTTCAAAAAACCTATTCTTAGATTTTGCGAAACACCTTTCTTTCGTAGTTTTTTTTGACTTTGATCTCTGTCTGAAGATTTCGAATTCATTTAAAGCCACTTGTTGGGGGAAAAACAGAGAACCATGCTATAAGTAAAATGGGAAAAGGAAATGGAGCACTCAGAAGTCGTTCACCATGACGGCTTTTATTTATTGCACTACTTTTACTGAGAAACTCAAAACGGGAAGTTCCGTCCTCAACAATTTTAAATAGGTCCCGTAAAGGCTGTTGGGTCGTTGGTGGGTTGCCGTGGACCAAACTGTCCGTTCTTAGGAAAATTAAGCTCCGCCAACCAAAAACTTCTAGAGCCGTTATGCCGCCGAACCCTAACCGTCCCAGAACCAAAGCTTTGGGTCCGGCTCTCTTTGCTTTTATAGAGCAAAACAAGATGAGCTGCAAAAAATAGGTCGGACGAGTGATGAATTAGGCCACTTGTCCAAATAGAAATACATAGAGCTATGAACCTTAACTTGTTTTGTTGTTTTCTTTTAATGATATGATGATGTTTGAAATTAAACAATTCCAACATTAAACGACAGGAGACACCTCCTTCCTTACAGCCTAACTATAAAAATAAGAGATGTTTGTTTTGTTGACCTCCCATCTCAAAAACCGAATTTAACGGTTATGACTCAGTGGAATCTAGATGCTCTCTCCGCTTCTTTTCTCTCCACTTAAAAAGTTATTGCATTCATAAAAATTGTGCTTTGTTCTCTCAAGTGAGTGGATCAATCATGAGCATGTTTAGGATTTGCATGGCTTCCTTCTTCCGTTGCAAATATTCATCCATCCTGCCGTCACCT</canonical>
            <polymorphic>CATCCATTATTCATCGTCTAAATTTAAATGGCCACCACTTCTCTCATCTATCCTAGAATATTGCTCGTCCTTTCTTCTCACGAGGACATTCTGGCGTCATTCTTCTGAAACGGGGAAGTGTTCCTCATTTAAAATTCATTGTCATGATCAGGTGGTGTTCAAAAAACCTATTCTTAGATTTTGCGAAACACCTTTCTTTCGTAGTTTTTTTTGACTTTGATCTCTGTCTGAAGATTTCGAATTCATTTAAAGCCACTTGTTGGGGGAAAAACAGAGAACCATGCTATAAGTAAAATGGGAAAAGGAAATGGAGCACTCAGAAGTCGTTCACCATGACGGCTTTTATTTATTGCACTACTTTTACTGAGAAACTCAAAACGGGAAGTTCCGTCCTCAACAATTTTAAATAGGTCCCGTAAAGGCTGTTGGGTCGTTGGTGGGTTGCCGTGGACCAAACTGTCCGTTCTTAGGAAAATTAAGCTCCGCCAACCAAAAACTTYTAGAGCCGTTATGCCGCCGAACCCTAACCGTCCCAGAACCAAAGCTTTGGGTCCGGCTCTCTTTGCTTTTATAGAGCAAAACAAGATGAGCTGCAAAAAATAGGTCGGACGAGTGATGAATTAGGCCACTTGTCCAAATAGAAATACATAGAGCTATGAACCTTAACTTGTTTTGTTGTTTTCTTTTAATGATATGATGATGTTTGAAATTAAACAATTCCAACATTAAACGACAGGAGACACCTCCTTCCTTACAGCCTAACTATAAAAATAAGAGATGTTTGTTTTGTTGACCTCCCATCTCAAAAACCGAATTTAACGGTTATGACTCAGTGGAATCTAGATGCTCTCTCCGCTTCTTTTCTCTCCACTTAAAAAGTTATTGCATTCATAAAAATTGTGCTTTGTTCTCTCAAGTGAGTGGATCAATCATGAGCATGTTTAGGATTTGCATGGCTTCCTTCTTCCGTTGCAAATATTCATCCATCCTGCCGTCACCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>447 340 160 53</canonical_bands>
                <polymorphic_bands>787 160 53</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>357 340 91 79 69 64</canonical_bands>
                <polymorphic_bands>697 91 79 69 64</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 340 161</canonical_bands>
                <polymorphic_bands>839 161</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCTTTTATTTATTGCACTACTTT</pcr_primer_p1>
		<pcr_primer_p2>GCTCATCTTGTTTTGCTCTATAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GGCTTTTATTTATTGCACTACTTTTACTGAGAAACTCAAAACGGGAAGTTCCGTCCTCAACAATTTTAAATAGGTCCCGTAAAGGCTGTTGGGTCGTTGGTGGGTTGCCGTGGACCAAACTGTCCGTTCTTAGGAAAATTAAGCTCCGCCAACCAAAAACTTCTAGAGCCGTTATGCCGCCGAACCCTAACCGTCCCAGAACCAAAGCTTTGGGTCCGGCTCTCTTTGCTTTTATAGAGCAAAACAAGATGAGC</canonical_amplicon>
		<polymorphic_amplicon>GGCTTTTATTTATTGCACTACTTTTACTGAGAAACTCAAAACGGGAAGTTCCGTCCTCAACAATTTTAAATAGGTCCCGTAAAGGCTGTTGGGTCGTTGGTGGGTTGCCGTGGACCAAACTGTCCGTTCTTAGGAAAATTAAGCTCCGCCAACCAAAAACTTYTAGAGCCGTTATGCCGCCGAACCCTAACCGTCCCAGAACCAAAGCTTTGGGTCCGGCTCTCTTTGCTTTTATAGAGCAAAACAAGATGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9711</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>84198</contig_pos>
        <strand></strand>
        <context>YGggtcgttg[G/A]tgggttgccg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCCGTCCTCAACAATTTTAAATAGGTCCCGTAAAGGCTGTTGGGTCGTTG</left_flank>
        <right_flank>TGGGTTGCCGTGGACCAAACTGTCCGTTCTTAGGAAAATTAAGCTCCGCC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAGTCGCAATTTTTTCTTCCATTTATCCAGAGAGGCGTCGAAATTGGAAATTGCCCATACACATCCATTATTCATCGTCTAAATTTAAATGGCCACCACTTCTCTCATCTATCCTAGAATATTGCTCGTCCTTTCTTCTCACGAGGACATTCTGGCGTCATTCTTCTGAAACGGGGAAGTGTTCCTCATTTAAAATTCATTGTCATGATCAGGTGGTGTTCAAAAAACCTATTCTTAGATTTTGCGAAACACCTTTCTTTCGTAGTTTTTTTTGACTTTGATCTCTGTCTGAAGATTTCGAATTCATTTAAAGCCACTTGTTGGGGGAAAAACAGAGAACCATGCTATAAGTAAAATGGGAAAAGGAAATGGAGCACTCAGAAGTCGTTCACCATGACGGCTTTTATTTATTGCACTACTTTTACTGAGAAACTCAAAACGGGAAGTTCCGTCCTCAACAATTTTAAATAGGTCCCGTAAAGGCTGTTGGGTCGTTGGTGGGTTGCCGTGGACCAAACTGTCCGTTCTTAGGAAAATTAAGCTCCGCCAACCAAAAACTTCTAGAGCCGTTATGCCGCCGAACCCTAACCGTCCCAGAACCAAAGCTTTGGGTCCGGCTCTCTTTGCTTTTATAGAGCAAAACAAGATGAGCTGCAAAAAATAGGTCGGACGAGTGATGAATTAGGCCACTTGTCCAAATAGAAATACATAGAGCTATGAACCTTAACTTGTTTTGTTGTTTTCTTTTAATGATATGATGATGTTTGAAATTAAACAATTCCAACATTAAACGACAGGAGACACCTCCTTCCTTACAGCCTAACTATAAAAATAAGAGATGTTTGTTTTGTTGACCTCCCATCTCAAAAACCGAATTTAACGGTTATGACTCAGTGGAATCTAGATGCTCTCTCCGCTTCTTTTCTCTCCACTTAAAAAGTTATTGCATTCATAAAAATTGTGCTTTGTTCTCTCAAGTGAGTGGATCAATCATGAGC</canonical>
            <polymorphic>TTCAGTCGCAATTTTTTCTTCCATTTATCCAGAGAGGCGTCGAAATTGGAAATTGCCCATACACATCCATTATTCATCGTCTAAATTTAAATGGCCACCACTTCTCTCATCTATCCTAGAATATTGCTCGTCCTTTCTTCTCACGAGGACATTCTGGCGTCATTCTTCTGAAACGGGGAAGTGTTCCTCATTTAAAATTCATTGTCATGATCAGGTGGTGTTCAAAAAACCTATTCTTAGATTTTGCGAAACACCTTTCTTTCGTAGTTTTTTTTGACTTTGATCTCTGTCTGAAGATTTCGAATTCATTTAAAGCCACTTGTTGGGGGAAAAACAGAGAACCATGCTATAAGTAAAATGGGAAAAGGAAATGGAGCACTCAGAAGTCGTTCACCATGACGGCTTTTATTTATTGCACTACTTTTACTGAGAAACTCAAAACGGGAAGTTCCGTCCTCAACAATTTTAAATAGGTCCCGTAAAGGCTGTTGGGTCGTTGRTGGGTTGCCGTGGACCAAACTGTCCGTTCTTAGGAAAATTAAGCTCCGCCAACCAAAAACTTCTAGAGCCGTTATGCCGCCGAACCCTAACCGTCCCAGAACCAAAGCTTTGGGTCCGGCTCTCTTTGCTTTTATAGAGCAAAACAAGATGAGCTGCAAAAAATAGGTCGGACGAGTGATGAATTAGGCCACTTGTCCAAATAGAAATACATAGAGCTATGAACCTTAACTTGTTTTGTTGTTTTCTTTTAATGATATGATGATGTTTGAAATTAAACAATTCCAACATTAAACGACAGGAGACACCTCCTTCCTTACAGCCTAACTATAAAAATAAGAGATGTTTGTTTTGTTGACCTCCCATCTCAAAAACCGAATTTAACGGTTATGACTCAGTGGAATCTAGATGCTCTCTCCGCTTCTTTTCTCTCCACTTAAAAAGTTATTGCATTCATAAAAATTGTGCTTTGTTCTCTCAAGTGAGTGGATCAATCATGAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>166 114 93 85 65 63 60 43 40 35 34 34 33 32 24 17 15 14 13 10 4 3 3</canonical_bands>
                <polymorphic_bands>166 114 95 93 65 63 60 43 40 35 34 34 33 32 24 17 15 14 13 4 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCTTTTATTTATTGCACTACTTT</pcr_primer_p1>
		<pcr_primer_p2>GCTCATCTTGTTTTGCTCTATAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GGCTTTTATTTATTGCACTACTTTTACTGAGAAACTCAAAACGGGAAGTTCCGTCCTCAACAATTTTAAATAGGTCCCGTAAAGGCTGTTGGGTCGTTGGTGGGTTGCCGTGGACCAAACTGTCCGTTCTTAGGAAAATTAAGCTCCGCCAACCAAAAACTTCTAGAGCCGTTATGCCGCCGAACCCTAACCGTCCCAGAACCAAAGCTTTGGGTCCGGCTCTCTTTGCTTTTATAGAGCAAAACAAGATGAGC</canonical_amplicon>
		<polymorphic_amplicon>GGCTTTTATTTATTGCACTACTTTTACTGAGAAACTCAAAACGGGAAGTTCCGTCCTCAACAATTTTAAATAGGTCCCGTAAAGGCTGTTGGGTCGTTGRTGGGTTGCCGTGGACCAAACTGTCCGTTCTTAGGAAAATTAAGCTCCGCCAACCAAAAACTTCTAGAGCCGTTATGCCGCCGAACCCTAACCGTCCCAGAACCAAAGCTTTGGGTCCGGCTCTCTTTGCTTTTATAGAGCAAAACAAGATGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9712</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>84188</contig_pos>
        <strand>+</strand>
        <context>TAAAGGCTGT[C/T]Gggtcgttgr</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACGGGAAGTTCCGTCCTCAACAATTTTAAATAGGTCCCGTAAAGGCTGT</left_flank>
        <right_flank>GGGTCGTTGGTGGGTTGCCGTGGACCAAACTGTCCGTTCTTAGGAAAATT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTCAATTTTCAGTCGCAATTTTTTCTTCCATTTATCCAGAGAGGCGTCGAAATTGGAAATTGCCCATACACATCCATTATTCATCGTCTAAATTTAAATGGCCACCACTTCTCTCATCTATCCTAGAATATTGCTCGTCCTTTCTTCTCACGAGGACATTCTGGCGTCATTCTTCTGAAACGGGGAAGTGTTCCTCATTTAAAATTCATTGTCATGATCAGGTGGTGTTCAAAAAACCTATTCTTAGATTTTGCGAAACACCTTTCTTTCGTAGTTTTTTTTGACTTTGATCTCTGTCTGAAGATTTCGAATTCATTTAAAGCCACTTGTTGGGGGAAAAACAGAGAACCATGCTATAAGTAAAATGGGAAAAGGAAATGGAGCACTCAGAAGTCGTTCACCATGACGGCTTTTATTTATTGCACTACTTTTACTGAGAAACTCAAAACGGGAAGTTCCGTCCTCAACAATTTTAAATAGGTCCCGTAAAGGCTGTTGGGTCGTTGGTGGGTTGCCGTGGACCAAACTGTCCGTTCTTAGGAAAATTAAGCTCCGCCAACCAAAAACTTCTAGAGCCGTTATGCCGCCGAACCCTAACCGTCCCAGAACCAAAGCTTTGGGTCCGGCTCTCTTTGCTTTTATAGAGCAAAACAAGATGAGCTGCAAAAAATAGGTCGGACGAGTGATGAATTAGGCCACTTGTCCAAATAGAAATACATAGAGCTATGAACCTTAACTTGTTTTGTTGTTTTCTTTTAATGATATGATGATGTTTGAAATTAAACAATTCCAACATTAAACGACAGGAGACACCTCCTTCCTTACAGCCTAACTATAAAAATAAGAGATGTTTGTTTTGTTGACCTCCCATCTCAAAAACCGAATTTAACGGTTATGACTCAGTGGAATCTAGATGCTCTCTCCGCTTCTTTTCTCTCCACTTAAAAAGTTATTGCATTCATAAAAATTGTGCTTTGTTCTCTCAAGTGAGTGGATC</canonical>
            <polymorphic>TTTCTCAATTTTCAGTCGCAATTTTTTCTTCCATTTATCCAGAGAGGCGTCGAAATTGGAAATTGCCCATACACATCCATTATTCATCGTCTAAATTTAAATGGCCACCACTTCTCTCATCTATCCTAGAATATTGCTCGTCCTTTCTTCTCACGAGGACATTCTGGCGTCATTCTTCTGAAACGGGGAAGTGTTCCTCATTTAAAATTCATTGTCATGATCAGGTGGTGTTCAAAAAACCTATTCTTAGATTTTGCGAAACACCTTTCTTTCGTAGTTTTTTTTGACTTTGATCTCTGTCTGAAGATTTCGAATTCATTTAAAGCCACTTGTTGGGGGAAAAACAGAGAACCATGCTATAAGTAAAATGGGAAAAGGAAATGGAGCACTCAGAAGTCGTTCACCATGACGGCTTTTATTTATTGCACTACTTTTACTGAGAAACTCAAAACGGGAAGTTCCGTCCTCAACAATTTTAAATAGGTCCCGTAAAGGCTGTYGGGTCGTTGGTGGGTTGCCGTGGACCAAACTGTCCGTTCTTAGGAAAATTAAGCTCCGCCAACCAAAAACTTCTAGAGCCGTTATGCCGCCGAACCCTAACCGTCCCAGAACCAAAGCTTTGGGTCCGGCTCTCTTTGCTTTTATAGAGCAAAACAAGATGAGCTGCAAAAAATAGGTCGGACGAGTGATGAATTAGGCCACTTGTCCAAATAGAAATACATAGAGCTATGAACCTTAACTTGTTTTGTTGTTTTCTTTTAATGATATGATGATGTTTGAAATTAAACAATTCCAACATTAAACGACAGGAGACACCTCCTTCCTTACAGCCTAACTATAAAAATAAGAGATGTTTGTTTTGTTGACCTCCCATCTCAAAAACCGAATTTAACGGTTATGACTCAGTGGAATCTAGATGCTCTCTCCGCTTCTTTTCTCTCCACTTAAAAAGTTATTGCATTCATAAAAATTGTGCTTTGTTCTCTCAAGTGAGTGGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCTTTTATTTATTGCACTACTTT</pcr_primer_p1>
		<pcr_primer_p2>GCTCATCTTGTTTTGCTCTATAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GGCTTTTATTTATTGCACTACTTTTACTGAGAAACTCAAAACGGGAAGTTCCGTCCTCAACAATTTTAAATAGGTCCCGTAAAGGCTGTTGGGTCGTTGGTGGGTTGCCGTGGACCAAACTGTCCGTTCTTAGGAAAATTAAGCTCCGCCAACCAAAAACTTCTAGAGCCGTTATGCCGCCGAACCCTAACCGTCCCAGAACCAAAGCTTTGGGTCCGGCTCTCTTTGCTTTTATAGAGCAAAACAAGATGAGC</canonical_amplicon>
		<polymorphic_amplicon>GGCTTTTATTTATTGCACTACTTTTACTGAGAAACTCAAAACGGGAAGTTCCGTCCTCAACAATTTTAAATAGGTCCCGTAAAGGCTGTYGGGTCGTTGGTGGGTTGCCGTGGACCAAACTGTCCGTTCTTAGGAAAATTAAGCTCCGCCAACCAAAAACTTCTAGAGCCGTTATGCCGCCGAACCCTAACCGTCCCAGAACCAAAGCTTTGGGTCCGGCTCTCTTTGCTTTTATAGAGCAAAACAAGATGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9713</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>84096</contig_pos>
        <strand>+</strand>
        <context>CGTTCACCAT[C/G]ACGGCTTTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TATAAGTAAAATGGGAAAAGGAAATGGAGCACTCAGAAGTCGTTCACCAT</left_flank>
        <right_flank>ACGGCTTTTATTTATTGCACTACTTTTACTGAGAAACTCAAAACGGGAAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGTAATTTTCCTCGATTTCCGTTGCTTCTTTTCACGTTAGTCACCTTTCCCGTCGTCTAAGTCTCTTCGTCCTTCTTCTCTCTCACTAATTTCTCAATTTTCAGTCGCAATTTTTTCTTCCATTTATCCAGAGAGGCGTCGAAATTGGAAATTGCCCATACACATCCATTATTCATCGTCTAAATTTAAATGGCCACCACTTCTCTCATCTATCCTAGAATATTGCTCGTCCTTTCTTCTCACGAGGACATTCTGGCGTCATTCTTCTGAAACGGGGAAGTGTTCCTCATTTAAAATTCATTGTCATGATCAGGTGGTGTTCAAAAAACCTATTCTTAGATTTTGCGAAACACCTTTCTTTCGTAGTTTTTTTTGACTTTGATCTCTGTCTGAAGATTTCGAATTCATTTAAAGCCACTTGTTGGGGGAAAAACAGAGAACCATGCTATAAGTAAAATGGGAAAAGGAAATGGAGCACTCAGAAGTCGTTCACCATGACGGCTTTTATTTATTGCACTACTTTTACTGAGAAACTCAAAACGGGAAGTTCCGTCCTCAACAATTTTAAATAGGTCCCGTAAAGGCTGTTGGGTCGTTGGTGGGTTGCCGTGGACCAAACTGTCCGTTCTTAGGAAAATTAAGCTCCGCCAACCAAAAACTTCTAGAGCCGTTATGCCGCCGAACCCTAACCGTCCCAGAACCAAAGCTTTGGGTCCGGCTCTCTTTGCTTTTATAGAGCAAAACAAGATGAGCTGCAAAAAATAGGTCGGACGAGTGATGAATTAGGCCACTTGTCCAAATAGAAATACATAGAGCTATGAACCTTAACTTGTTTTGTTGTTTTCTTTTAATGATATGATGATGTTTGAAATTAAACAATTCCAACATTAAACGACAGGAGACACCTCCTTCCTTACAGCCTAACTATAAAAATAAGAGATGTTTGTTTTGTTGACCTCCCATCTCAAAAACCGAATTTAACGGTTATGACTCAGTG</canonical>
            <polymorphic>TTTCGTAATTTTCCTCGATTTCCGTTGCTTCTTTTCACGTTAGTCACCTTTCCCGTCGTCTAAGTCTCTTCGTCCTTCTTCTCTCTCACTAATTTCTCAATTTTCAGTCGCAATTTTTTCTTCCATTTATCCAGAGAGGCGTCGAAATTGGAAATTGCCCATACACATCCATTATTCATCGTCTAAATTTAAATGGCCACCACTTCTCTCATCTATCCTAGAATATTGCTCGTCCTTTCTTCTCACGAGGACATTCTGGCGTCATTCTTCTGAAACGGGGAAGTGTTCCTCATTTAAAATTCATTGTCATGATCAGGTGGTGTTCAAAAAACCTATTCTTAGATTTTGCGAAACACCTTTCTTTCGTAGTTTTTTTTGACTTTGATCTCTGTCTGAAGATTTCGAATTCATTTAAAGCCACTTGTTGGGGGAAAAACAGAGAACCATGCTATAAGTAAAATGGGAAAAGGAAATGGAGCACTCAGAAGTCGTTCACCATSACGGCTTTTATTTATTGCACTACTTTTACTGAGAAACTCAAAACGGGAAGTTCCGTCCTCAACAATTTTAAATAGGTCCCGTAAAGGCTGTTGGGTCGTTGGTGGGTTGCCGTGGACCAAACTGTCCGTTCTTAGGAAAATTAAGCTCCGCCAACCAAAAACTTCTAGAGCCGTTATGCCGCCGAACCCTAACCGTCCCAGAACCAAAGCTTTGGGTCCGGCTCTCTTTGCTTTTATAGAGCAAAACAAGATGAGCTGCAAAAAATAGGTCGGACGAGTGATGAATTAGGCCACTTGTCCAAATAGAAATACATAGAGCTATGAACCTTAACTTGTTTTGTTGTTTTCTTTTAATGATATGATGATGTTTGAAATTAAACAATTCCAACATTAAACGACAGGAGACACCTCCTTCCTTACAGCCTAACTATAAAAATAAGAGATGTTTGTTTTGTTGACCTCCCATCTCAAAAACCGAATTTAACGGTTATGACTCAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 308 137 52</canonical_bands>
                <polymorphic_bands>555 308 137</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTCTTAGATTTTGCGAAACAC</pcr_primer_p1>
		<pcr_primer_p2>GGGACCTATTTAAAATTGTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TATTCTTAGATTTTGCGAAACACCTTTCTTTCGTAGTTTTTTTTGACTTTGATCTCTGTCTGAAGATTTCGAATTCATTTAAAGCCACTTGTTGGGGGAAAAACAGAGAACCATGCTATAAGTAAAATGGGAAAAGGAAATGGAGCACTCAGAAGTCGTTCACCATGACGGCTTTTATTTATTGCACTACTTTTACTGAGAAACTCAAAACGGGAAGTTCCGTCCTCAACAATTTTAAATAGGTCCC</canonical_amplicon>
		<polymorphic_amplicon>TATTCTTAGATTTTGCGAAACACCTTTCTTTCGTAGTTTTTTTTGACTTTGATCTCTGTCTGAAGATTTCGAATTCATTTAAAGCCACTTGTTGGGGGAAAAACAGAGAACCATGCTATAAGTAAAATGGGAAAAGGAAATGGAGCACTCAGAAGTCGTTCACCATSACGGCTTTTATTTATTGCACTACTTTTACTGAGAAACTCAAAACGGGAAGTTCCGTCCTCAACAATTTTAAATAGGTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9715</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>132557</contig_pos>
        <strand>+</strand>
        <context>ATTCATTCGA[G/T]ACAATTATCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTAACTTATAACAGACAGAACAGTTGAAAAACAAAATCATTCATTCGA</left_flank>
        <right_flank>ACAATTATCACAATGTTTTTTTTTTCAATAACCGGTTTAGTATTGACTGA</right_flank>
        <qual_score>134</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTGAACTCAATTATCTCAACTCCTGTGCGAGATTTTTAACATTTGCCAGCTGATAAAATATTGGTGATATTATGATAAATAATTCATCAGTTGGCAAATTTTCAATATTTTTCAAAGGAATTGAGATAATTAGGCTCAAAGTTAGTTGTCTTCTATTAGAGGAAATACGGTATAATATTTCCAGCTACAATGTACGATAATTTATACTTCAATGTATCAATCAATCCAATTGTCCACCCAATTACCAATCTCTCTATCAATTTTTGACGGCAGCGCATTCTTCGAAGATCTCTTCCTCCCATTGATGATATCATTTTCGCCGAAACAGTGATTTGTGACCAGCCGCAATTTTTGTCCTTCATTGAACACCAAGACACATTGAAAAGTATGGTCAAATAATTTTTTATTTGCACCACGATTCTTTCACTATTTACTCATTCGCAACGAATTAACTTATAACAGACAGAACAGTTGAAAAACAAAATCATTCATTCGATACAATTATCACAATGTTTTTTTTTTCAATAACCGGTTTAGTATTGACTGATACCAATAGTTTAATTAAACACAGCTGGACCCGTTGAATTAAAATTATTTTCGTAAAAAAGGAGAAAAAGAAATAAATTAATACATGTGGGAGCCAATCTTTTTGATGTTCAAGAACCAAACTGTGGCGATTGCGAAGAATACAGCAGACTTGATGATCCACAGTGGTCCAACTCCTAGTAATGTGAACATGGTTCTGGAATAAACAATTTTCAATATCACTGTATCACTATCGAATGAAAACATACGTTGTGAATATTGGAGTTACCATGAACACAATATCGTCTACAATTGTCATTGCTCCTTGAGCAACACTCTGATCTACGTTTCCTAGAATTCTTGAATACACAGTATCCAATGCAGTATGCATCATTGGAATCGATGGAGCTGATATAATCAATGATATGACCATAAAGAAGTATGGGTTGACTGCGATCGCATTTTCACACCA</canonical>
            <polymorphic>ACTTTGAACTCAATTATCTCAACTCCTGTGCGAGATTTTTAACATTTGCCAGCTGATAAAATATTGGTGATATTATGATAAATAATTCATCAGTTGGCAAATTTTCAATATTTTTCAAAGGAATTGAGATAATTAGGCTCAAAGTTAGTTGTCTTCTATTAGAGGAAATACGGTATAATATTTCCAGCTACAATGTACGATAATTTATACTTCAATGTATCAATCAATCCAATTGTCCACCCAATTACCAATCTCTCTATCAATTTTTGACGGCAGCGCATTCTTCGAAGATCTCTTCCTCCCATTGATGATATCATTTTCGCCGAAACAGTGATTTGTGACCAGCCGCAATTTTTGTCCTTCATTGAACACCAAGACACATTGAAAAGTATGGTCAAATAATTTTTTATTTGCACCACGATTCTTTCACTATTTACTCATTCGCAACGAATTAACTTATAACAGACAGAACAGTTGAAAAACAAAATCATTCATTCGAKACAATTATCACAATGTTTTTTTTTTCAATAACCGGTTTAGTATTGACTGATACCAATAGTTTAATTAAACACAGCTGGACCCGTTGAATTAAAATTATTTTCGTAAAAAAGGAGAAAAAGAAATAAATTAATACATGTGGGAGCCAATCTTTTTGATGTTCAAGAACCAAACTGTGGCGATTGCGAAGAATACAGCAGACTTGATGATCCACAGTGGTCCAACTCCTAGTAATGTGAACATGGTTCTGGAATAAACAATTTTCAATATCACTGTATCACTATCGAATGAAAACATACGTTGTGAATATTGGAGTTACCATGAACACAATATCGTCTACAATTGTCATTGCTCCTTGAGCAACACTCTGATCTACGTTTCCTAGAATTCTTGAATACACAGTATCCAATGCAGTATGCATCATTGGAATCGATGGAGCTGATATAATCAATGATATGACCATAAAGAAGTATGGGTTGACTGCGATCGCATTTTCACACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACGATTCTTTCACTATTTACTCA</pcr_primer_p1>
		<pcr_primer_p2>GTTCTTGAACATCAAAAAGATTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CACGATTCTTTCACTATTTACTCATTCGCAACGAATTAACTTATAACAGACAGAACAGTTGAAAAACAAAATCATTCATTCGATACAATTATCACAATGTTTTTTTTTTCAATAACCGGTTTAGTATTGACTGATACCAATAGTTTAATTAAACACAGCTGGACCCGTTGAATTAAAATTATTTTCGTAAAAAAGGAGAAAAAGAAATAAATTAATACATGTGGGAGCCAATCTTTTTGATGTTCAAGAAC</canonical_amplicon>
		<polymorphic_amplicon>CACGATTCTTTCACTATTTACTCATTCGCAACGAATTAACTTATAACAGACAGAACAGTTGAAAAACAAAATCATTCATTCGAKACAATTATCACAATGTTTTTTTTTTCAATAACCGGTTTAGTATTGACTGATACCAATAGTTTAATTAAACACAGCTGGACCCGTTGAATTAAAATTATTTTCGTAAAAAAGGAGAAAAAGAAATAAATTAATACATGTGGGAGCCAATCTTTTTGATGTTCAAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9716</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>134059</contig_pos>
        <strand></strand>
        <context>ctttttgata[T/A]cttctacagg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATTTTTATCACAGTATCAAAAATTTTTTGTCAGTTGACCACTTTTTGATA</left_flank>
        <right_flank>CTTCTACAGGGACCGTGAAAAATTTAGTCAAAGTTAATAGTTCGGGTATC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGGTTTATTTTCTTCCTCTTCCAGTTTGCTTTCTGTGGAGGCTCGGTGAACATCTTGCATGAAGAATGCAATGAAGAAAACTGTGAAGATTGTGAGAATGAATGAGAACCAAATAGGTGCCGAGTAGATATGGAATCTCATTCCGTGTATAATTTCGTATCCAGGATAAGCAATGCTACTGAATAAGAGTTGAAGAGTAGGACCAACTACAATCGAAACGATGATCGAGAGACCGATTACAGCAAAAGCTCTGGGACGGTCTTTGGTGGATGAGCACATAGCGATGTATCCTCGAAGTACCGTAGTAGCACCTGAAACCATGTTAGACATCTATACTATCTTCACCCATATACCGTGAACACTAATAGAACGCCAGTCAAACCGCCAACTTTTAGCTCGTTTATCTCGATTCGTGTGAAAGACATCAAAAAATTATCAATTAACAAAATTTTTATCACAGTATCAAAAATTTTTTGTCAGTTGACCACTTTTTGATATCTTCTACAGGGACCGTGAAAAATTTAGTCAAAGTTAATAGTTCGGGTATCGTTCTATTAGAGTGACAATGGCAACTCACTGTTAGCGATTCCCAGTAGAATATATACACTTCCCAATACATATCTCTTTCCTGATGGTACATATTCAATGCTCAAGTAGATCAGACACGCAACAATCGCAATTAAACGGCTAGCCATAAGTGGGATTCTGAATAATAACGATACGTCATCGCTTGTTCCGGTTGAGTTCTCACTTGACTGAATGTGTTTTGTAACTCCAAATCGAGAAAACCAGTGCGAACAAAGCATGTCCACACTTGGATGCCGATGTTGCCATACCGAAAAACTGTGCCGTTGCATCTTTGTCTATCTAAACACATCAATTATTCGTGACACGTTTATTTTTCTGGATTACTCACCTCTTTCATATATGGCCACTCTCCGATTCCCACAACAGAATTTTCCACAGCATTTAACGCGGAAACAATTCCAGCAACAATG</canonical>
            <polymorphic>ATTGGTTTATTTTCTTCCTCTTCCAGTTTGCTTTCTGTGGAGGCTCGGTGAACATCTTGCATGAAGAATGCAATGAAGAAAACTGTGAAGATTGTGAGAATGAATGAGAACCAAATAGGTGCCGAGTAGATATGGAATCTCATTCCGTGTATAATTTCGTATCCAGGATAAGCAATGCTACTGAATAAGAGTTGAAGAGTAGGACCAACTACAATCGAAACGATGATCGAGAGACCGATTACAGCAAAAGCTCTGGGACGGTCTTTGGTGGATGAGCACATAGCGATGTATCCTCGAAGTACCGTAGTAGCACCTGAAACCATGTTAGACATCTATACTATCTTCACCCATATACCGTGAACACTAATAGAACGCCAGTCAAACCGCCAACTTTTAGCTCGTTTATCTCGATTCGTGTGAAAGACATCAAAAAATTATCAATTAACAAAATTTTTATCACAGTATCAAAAATTTTTTGTCAGTTGACCACTTTTTGATAWCTTCTACAGGGACCGTGAAAAATTTAGTCAAAGTTAATAGTTCGGGTATCGTTCTATTAGAGTGACAATGGCAACTCACTGTTAGCGATTCCCAGTAGAATATATACACTTCCCAATACATATCTCTTTCCTGATGGTACATATTCAATGCTCAAGTAGATCAGACACGCAACAATCGCAATTAAACGGCTAGCCATAAGTGGGATTCTGAATAATAACGATACGTCATCGCTTGTTCCGGTTGAGTTCTCACTTGACTGAATGTGTTTTGTAACTCCAAATCGAGAAAACCAGTGCGAACAAAGCATGTCCACACTTGGATGCCGATGTTGCCATACCGAAAAACTGTGCCGTTGCATCTTTGTCTATCTAAACACATCAATTATTCGTGACACGTTTATTTTTCTGGATTACTCACCTCTTTCATATATGGCCACTCTCCGATTCCCACAACAGAATTTTCCACAGCATTTAACGCGGAAACAATTCCAGCAACAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACATCTATACTATCTTCACCCATA</pcr_primer_p1>
		<pcr_primer_p2>CTAACAGTGAGTTGCCATTGT</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>AGACATCTATACTATCTTCACCCATATACCGTGAACACTAATAGAACGCCAGTCAAACCGCCAACTTTTAGCTCGTTTATCTCGATTCGTGTGAAAGACATCAAAAAATTATCAATTAACAAAATTTTTATCACAGTATCAAAAATTTTTTGTCAGTTGACCACTTTTTGATATCTTCTACAGGGACCGTGAAAAATTTAGTCAAAGTTAATAGTTCGGGTATCGTTCTATTAGAGTGACAATGGCAACTCACTGTTAG</canonical_amplicon>
		<polymorphic_amplicon>AGACATCTATACTATCTTCACCCATATACCGTGAACACTAATAGAACGCCAGTCAAACCGCCAACTTTTAGCTCGTTTATCTCGATTCGTGTGAAAGACATCAAAAAATTATCAATTAACAAAATTTTTATCACAGTATCAAAAATTTTTTGTCAGTTGACCACTTTTTGATAWCTTCTACAGGGACCGTGAAAAATTTAGTCAAAGTTAATAGTTCGGGTATCGTTCTATTAGAGTGACAATGGCAACTCACTGTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9717</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>161682</contig_pos>
        <strand>+</strand>
        <context>TCTATTCAGA[C/T]CACACATTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGGATTACAGATACTTGTCGGTTTTAGCAAATTACGGACTCTATTCAGA</left_flank>
        <right_flank>CACACATTGGAATCGGCACAAGCATTGCAATTTTCAAAAAATCAAGTAGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAACCATATTCATTGCTTCTATTCTGCTGCATCATCTTTTCGAAAAGCAGTATTTGAAGTTGCGAATGGGCGCAGTGTTCTCATTGATATTTTTTTTGATTGGTGCAAATGCGTATTTACAATATAGTGTTCGAAATGACAGTTTTTGGAATATGAATTTGCCAGATGAAACGAGAGAAATTATTGACAAAAATCGGATACTTTATGTGTCGCTTTGGGATGTTGAAGCTCGAAAAGATAAATGCATAGAGACAGACACAGACACCCCATTCCCAAAAAGCAACCTTAAAGGTTACTGTAGATATCCAGTGTGTAAAACCTTCCATTTTTTCTTTGTGATCCGAGTTATTTTCAGCCTGGAAATGGAAGTATCTCCATAATGATGCTAGGAAATAGTTATGTGATGAATCTTGGAGAGCATATCCGAGCTCATTTCAATTACAACTACTCGGATTACAGATACTTGTCGGTTTTAGCAAATTACGGACTCTATTCAGACCACACATTGGAATCGGCACAAGCATTGCAATTTTCAAAAAATCAAGTAGAATTATATAAACCTGATGTTCTTTTTGTGGTTTCCAGGTTAGTTTCTTTAGTTCCAAATTGCATACACTTTTAAAATCTTTTTTTTTTGTTTCTAGGTATATGGAAAACATTAAAAATCCTATTCAAAACAACGATCCTATAGTCCGGGAGATAAATGAGACTATAGCATACTATGAAAAGTAAGTACAACTGCGAATAAGTATTATTTTTCCACATTTTCAGATTCGTTAAAAAGCTCTACATTCTCGACGCTCATCCGATGTATCATGAAAACTTTCTGAACCTTTTCCTTCATTTTGTGATTACGAGACCCGATGATTTGGACGTTCTCCATCTGGACAAAAAACTAGCAGATGATGAAATGAGGCCGGTTAAGAAACGGTTTGCAGAAATAAAATGCAAGAAGTGTCATGTAAGTTTTGACACAGGGACGATAAAATTAACAATATC</canonical>
            <polymorphic>GTAACCATATTCATTGCTTCTATTCTGCTGCATCATCTTTTCGAAAAGCAGTATTTGAAGTTGCGAATGGGCGCAGTGTTCTCATTGATATTTTTTTTGATTGGTGCAAATGCGTATTTACAATATAGTGTTCGAAATGACAGTTTTTGGAATATGAATTTGCCAGATGAAACGAGAGAAATTATTGACAAAAATCGGATACTTTATGTGTCGCTTTGGGATGTTGAAGCTCGAAAAGATAAATGCATAGAGACAGACACAGACACCCCATTCCCAAAAAGCAACCTTAAAGGTTACTGTAGATATCCAGTGTGTAAAACCTTCCATTTTTTCTTTGTGATCCGAGTTATTTTCAGCCTGGAAATGGAAGTATCTCCATAATGATGCTAGGAAATAGTTATGTGATGAATCTTGGAGAGCATATCCGAGCTCATTTCAATTACAACTACTCGGATTACAGATACTTGTCGGTTTTAGCAAATTACGGACTCTATTCAGAYCACACATTGGAATCGGCACAAGCATTGCAATTTTCAAAAAATCAAGTAGAATTATATAAACCTGATGTTCTTTTTGTGGTTTCCAGGTTAGTTTCTTTAGTTCCAAATTGCATACACTTTTAAAATCTTTTTTTTTTGTTTCTAGGTATATGGAAAACATTAAAAATCCTATTCAAAACAACGATCCTATAGTCCGGGAGATAAATGAGACTATAGCATACTATGAAAAGTAAGTACAACTGCGAATAAGTATTATTTTTCCACATTTTCAGATTCGTTAAAAAGCTCTACATTCTCGACGCTCATCCGATGTATCATGAAAACTTTCTGAACCTTTTCCTTCATTTTGTGATTACGAGACCCGATGATTTGGACGTTCTCCATCTGGACAAAAAACTAGCAGATGATGAAATGAGGCCGGTTAAGAAACGGTTTGCAGAAATAAAATGCAAGAAGTGTCATGTAAGTTTTGACACAGGGACGATAAAATTAACAATATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNTGG</site>
                <isoschizomers>
                    <enzyme>AccB7I</enzyme>
                    <enzyme>PflBI</enzyme>
                    <enzyme>PflMI</enzyme>
                    <enzyme>Van91I</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>494 363 143</canonical_bands>
                <polymorphic_bands>637 363</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCCATAATGATGCTAGGAAATA</pcr_primer_p1>
		<pcr_primer_p2>AAAGTGTATGCAATTTGGAACTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTCCATAATGATGCTAGGAAATAGTTATGTGATGAATCTTGGAGAGCATATCCGAGCTCATTTCAATTACAACTACTCGGATTACAGATACTTGTCGGTTTTAGCAAATTACGGACTCTATTCAGACCACACATTGGAATCGGCACAAGCATTGCAATTTTCAAAAAATCAAGTAGAATTATATAAACCTGATGTTCTTTTTGTGGTTTCCAGGTTAGTTTCTTTAGTTCCAAATTGCATACACTTT</canonical_amplicon>
		<polymorphic_amplicon>CTCCATAATGATGCTAGGAAATAGTTATGTGATGAATCTTGGAGAGCATATCCGAGCTCATTTCAATTACAACTACTCGGATTACAGATACTTGTCGGTTTTAGCAAATTACGGACTCTATTCAGAYCACACATTGGAATCGGCACAAGCATTGCAATTTTCAAAAAATCAAGTAGAATTATATAAACCTGATGTTCTTTTTGTGGTTTCCAGGTTAGTTTCTTTAGTTCCAAATTGCATACACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9718</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>161880</contig_pos>
        <strand>+</strand>
        <context>TATAGTCCGG[C/G]AGATAAATGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATATGGAAAACATTAAAAATCCTATTCAAAACAACGATCCTATAGTCCGG</left_flank>
        <right_flank>AGATAAATGAGACTATAGCATACTATGAAAAGTAAGTACAACTGCGAATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATACTTTATGTGTCGCTTTGGGATGTTGAAGCTCGAAAAGATAAATGCATAGAGACAGACACAGACACCCCATTCCCAAAAAGCAACCTTAAAGGTTACTGTAGATATCCAGTGTGTAAAACCTTCCATTTTTTCTTTGTGATCCGAGTTATTTTCAGCCTGGAAATGGAAGTATCTCCATAATGATGCTAGGAAATAGTTATGTGATGAATCTTGGAGAGCATATCCGAGCTCATTTCAATTACAACTACTCGGATTACAGATACTTGTCGGTTTTAGCAAATTACGGACTCTATTCAGACCACACATTGGAATCGGCACAAGCATTGCAATTTTCAAAAAATCAAGTAGAATTATATAAACCTGATGTTCTTTTTGTGGTTTCCAGGTTAGTTTCTTTAGTTCCAAATTGCATACACTTTTAAAATCTTTTTTTTTTGTTTCTAGGTATATGGAAAACATTAAAAATCCTATTCAAAACAACGATCCTATAGTCCGGGAGATAAATGAGACTATAGCATACTATGAAAAGTAAGTACAACTGCGAATAAGTATTATTTTTCCACATTTTCAGATTCGTTAAAAAGCTCTACATTCTCGACGCTCATCCGATGTATCATGAAAACTTTCTGAACCTTTTCCTTCATTTTGTGATTACGAGACCCGATGATTTGGACGTTCTCCATCTGGACAAAAAACTAGCAGATGATGAAATGAGGCCGGTTAAGAAACGGTTTGCAGAAATAAAATGCAAGAAGTGTCATGTAAGTTTTGACACAGGGACGATAAAATTAACAATATCATTTTGCAGTTCTTCGATTTGAGTCACGTGTTTGTTGATGGAGATAAATACCTAACATTCGACAGGGAAACTCTAATGGCTTATGTTGATAATTCCGTTCATTTAACAGGTCCAGGAGTACAACTTTGTGAACCGGTTTTTGAACAAGTTGCAAAAGAAATAATGAATAGTTTTTAAATTATTATTTTGGTTTTTCTC</canonical>
            <polymorphic>ATACTTTATGTGTCGCTTTGGGATGTTGAAGCTCGAAAAGATAAATGCATAGAGACAGACACAGACACCCCATTCCCAAAAAGCAACCTTAAAGGTTACTGTAGATATCCAGTGTGTAAAACCTTCCATTTTTTCTTTGTGATCCGAGTTATTTTCAGCCTGGAAATGGAAGTATCTCCATAATGATGCTAGGAAATAGTTATGTGATGAATCTTGGAGAGCATATCCGAGCTCATTTCAATTACAACTACTCGGATTACAGATACTTGTCGGTTTTAGCAAATTACGGACTCTATTCAGACCACACATTGGAATCGGCACAAGCATTGCAATTTTCAAAAAATCAAGTAGAATTATATAAACCTGATGTTCTTTTTGTGGTTTCCAGGTTAGTTTCTTTAGTTCCAAATTGCATACACTTTTAAAATCTTTTTTTTTTGTTTCTAGGTATATGGAAAACATTAAAAATCCTATTCAAAACAACGATCCTATAGTCCGGSAGATAAATGAGACTATAGCATACTATGAAAAGTAAGTACAACTGCGAATAAGTATTATTTTTCCACATTTTCAGATTCGTTAAAAAGCTCTACATTCTCGACGCTCATCCGATGTATCATGAAAACTTTCTGAACCTTTTCCTTCATTTTGTGATTACGAGACCCGATGATTTGGACGTTCTCCATCTGGACAAAAAACTAGCAGATGATGAAATGAGGCCGGTTAAGAAACGGTTTGCAGAAATAAAATGCAAGAAGTGTCATGTAAGTTTTGACACAGGGACGATAAAATTAACAATATCATTTTGCAGTTCTTCGATTTGAGTCACGTGTTTGTTGATGGAGATAAATACCTAACATTCGACAGGGAAACTCTAATGGCTTATGTTGATAATTCCGTTCATTTAACAGGTCCAGGAGTACAACTTTGTGAACCGGTTTTTGAACAAGTTGCAAAAGAAATAATGAATAGTTTTTAAATTATTATTTTGGTTTTTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>418 226 160 111 85</canonical_bands>
                <polymorphic_bands>529 226 160 85</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>495 418 87</canonical_bands>
                <polymorphic_bands>913 87</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAACCTGATGTTCTTTTTGTG</pcr_primer_p1>
		<pcr_primer_p2>TCGAGAATGTAGAGCTTTTTAAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATAAACCTGATGTTCTTTTTGTGGTTTCCAGGTTAGTTTCTTTAGTTCCAAATTGCATACACTTTTAAAATCTTTTTTTTTTGTTTCTAGGTATATGGAAAACATTAAAAATCCTATTCAAAACAACGATCCTATAGTCCGGGAGATAAATGAGACTATAGCATACTATGAAAAGTAAGTACAACTGCGAATAAGTATTATTTTTCCACATTTTCAGATTCGTTAAAAAGCTCTACATTCTCGA</canonical_amplicon>
		<polymorphic_amplicon>ATAAACCTGATGTTCTTTTTGTGGTTTCCAGGTTAGTTTCTTTAGTTCCAAATTGCATACACTTTTAAAATCTTTTTTTTTTGTTTCTAGGTATATGGAAAACATTAAAAATCCTATTCAAAACAACGATCCTATAGTCCGGSAGATAAATGAGACTATAGCATACTATGAAAAGTAAGTACAACTGCGAATAAGTATTATTTTTCCACATTTTCAGATTCGTTAAAAAGCTCTACATTCTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9719</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>161926</contig_pos>
        <strand>+</strand>
        <context>GTACAACTGC[A/G]AATAARTATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGGGAGATAAATGAGACTATAGCATACTATGAAAAGTAAGTACAACTGC</left_flank>
        <right_flank>AATAAGTATTATTTTTCCACATTTTCAGATTCGTTAAAAAGCTCTACATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATAGAGACAGACACAGACACCCCATTCCCAAAAAGCAACCTTAAAGGTTACTGTAGATATCCAGTGTGTAAAACCTTCCATTTTTTCTTTGTGATCCGAGTTATTTTCAGCCTGGAAATGGAAGTATCTCCATAATGATGCTAGGAAATAGTTATGTGATGAATCTTGGAGAGCATATCCGAGCTCATTTCAATTACAACTACTCGGATTACAGATACTTGTCGGTTTTAGCAAATTACGGACTCTATTCAGACCACACATTGGAATCGGCACAAGCATTGCAATTTTCAAAAAATCAAGTAGAATTATATAAACCTGATGTTCTTTTTGTGGTTTCCAGGTTAGTTTCTTTAGTTCCAAATTGCATACACTTTTAAAATCTTTTTTTTTTGTTTCTAGGTATATGGAAAACATTAAAAATCCTATTCAAAACAACGATCCTATAGTCCGGGAGATAAATGAGACTATAGCATACTATGAAAAGTAAGTACAACTGCGAATAAGTATTATTTTTCCACATTTTCAGATTCGTTAAAAAGCTCTACATTCTCGACGCTCATCCGATGTATCATGAAAACTTTCTGAACCTTTTCCTTCATTTTGTGATTACGAGACCCGATGATTTGGACGTTCTCCATCTGGACAAAAAACTAGCAGATGATGAAATGAGGCCGGTTAAGAAACGGTTTGCAGAAATAAAATGCAAGAAGTGTCATGTAAGTTTTGACACAGGGACGATAAAATTAACAATATCATTTTGCAGTTCTTCGATTTGAGTCACGTGTTTGTTGATGGAGATAAATACCTAACATTCGACAGGGAAACTCTAATGGCTTATGTTGATAATTCCGTTCATTTAACAGGTCCAGGAGTACAACTTTGTGAACCGGTTTTTGAACAAGTTGCAAAAGAAATAATGAATAGTTTTTAAATTATTATTTTGGTTTTTCTCTACCGAATTTCATATCAATATATCTTTCGAATTTGATCTTATGAAC</canonical>
            <polymorphic>GCATAGAGACAGACACAGACACCCCATTCCCAAAAAGCAACCTTAAAGGTTACTGTAGATATCCAGTGTGTAAAACCTTCCATTTTTTCTTTGTGATCCGAGTTATTTTCAGCCTGGAAATGGAAGTATCTCCATAATGATGCTAGGAAATAGTTATGTGATGAATCTTGGAGAGCATATCCGAGCTCATTTCAATTACAACTACTCGGATTACAGATACTTGTCGGTTTTAGCAAATTACGGACTCTATTCAGACCACACATTGGAATCGGCACAAGCATTGCAATTTTCAAAAAATCAAGTAGAATTATATAAACCTGATGTTCTTTTTGTGGTTTCCAGGTTAGTTTCTTTAGTTCCAAATTGCATACACTTTTAAAATCTTTTTTTTTTGTTTCTAGGTATATGGAAAACATTAAAAATCCTATTCAAAACAACGATCCTATAGTCCGGGAGATAAATGAGACTATAGCATACTATGAAAAGTAAGTACAACTGCRAATAAGTATTATTTTTCCACATTTTCAGATTCGTTAAAAAGCTCTACATTCTCGACGCTCATCCGATGTATCATGAAAACTTTCTGAACCTTTTCCTTCATTTTGTGATTACGAGACCCGATGATTTGGACGTTCTCCATCTGGACAAAAAACTAGCAGATGATGAAATGAGGCCGGTTAAGAAACGGTTTGCAGAAATAAAATGCAAGAAGTGTCATGTAAGTTTTGACACAGGGACGATAAAATTAACAATATCATTTTGCAGTTCTTCGATTTGAGTCACGTGTTTGTTGATGGAGATAAATACCTAACATTCGACAGGGAAACTCTAATGGCTTATGTTGATAATTCCGTTCATTTAACAGGTCCAGGAGTACAACTTTGTGAACCGGTTTTTGAACAAGTTGCAAAAGAAATAATGAATAGTTTTTAAATTATTATTTTGGTTTTTCTCTACCGAATTTCATATCAATATATCTTTCGAATTTGATCTTATGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAAAACAACGATCCTATAGTC</pcr_primer_p1>
		<pcr_primer_p2>CTCATTTCATCATCTGCTAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTCAAAACAACGATCCTATAGTCCGGGAGATAAATGAGACTATAGCATACTATGAAAAGTAAGTACAACTGCGAATAAGTATTATTTTTCCACATTTTCAGATTCGTTAAAAAGCTCTACATTCTCGACGCTCATCCGATGTATCATGAAAACTTTCTGAACCTTTTCCTTCATTTTGTGATTACGAGACCCGATGATTTGGACGTTCTCCATCTGGACAAAAAACTAGCAGATGATGAAATGAG</canonical_amplicon>
		<polymorphic_amplicon>TTCAAAACAACGATCCTATAGTCCGGGAGATAAATGAGACTATAGCATACTATGAAAAGTAAGTACAACTGCRAATAAGTATTATTTTTCCACATTTTCAGATTCGTTAAAAAGCTCTACATTCTCGACGCTCATCCGATGTATCATGAAAACTTTCTGAACCTTTTCCTTCATTTTGTGATTACGAGACCCGATGATTTGGACGTTCTCCATCTGGACAAAAAACTAGCAGATGATGAAATGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9720</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>161932</contig_pos>
        <strand>+</strand>
        <context>CTGCRAATAA[A/G]TATTATTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATAAATGAGACTATAGCATACTATGAAAAGTAAGTACAACTGCGAATAA</left_flank>
        <right_flank>TATTATTTTTCCACATTTTCAGATTCGTTAAAAAGCTCTACATTCTCGAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACAGACACAGACACCCCATTCCCAAAAAGCAACCTTAAAGGTTACTGTAGATATCCAGTGTGTAAAACCTTCCATTTTTTCTTTGTGATCCGAGTTATTTTCAGCCTGGAAATGGAAGTATCTCCATAATGATGCTAGGAAATAGTTATGTGATGAATCTTGGAGAGCATATCCGAGCTCATTTCAATTACAACTACTCGGATTACAGATACTTGTCGGTTTTAGCAAATTACGGACTCTATTCAGACCACACATTGGAATCGGCACAAGCATTGCAATTTTCAAAAAATCAAGTAGAATTATATAAACCTGATGTTCTTTTTGTGGTTTCCAGGTTAGTTTCTTTAGTTCCAAATTGCATACACTTTTAAAATCTTTTTTTTTTGTTTCTAGGTATATGGAAAACATTAAAAATCCTATTCAAAACAACGATCCTATAGTCCGGGAGATAAATGAGACTATAGCATACTATGAAAAGTAAGTACAACTGCGAATAAGTATTATTTTTCCACATTTTCAGATTCGTTAAAAAGCTCTACATTCTCGACGCTCATCCGATGTATCATGAAAACTTTCTGAACCTTTTCCTTCATTTTGTGATTACGAGACCCGATGATTTGGACGTTCTCCATCTGGACAAAAAACTAGCAGATGATGAAATGAGGCCGGTTAAGAAACGGTTTGCAGAAATAAAATGCAAGAAGTGTCATGTAAGTTTTGACACAGGGACGATAAAATTAACAATATCATTTTGCAGTTCTTCGATTTGAGTCACGTGTTTGTTGATGGAGATAAATACCTAACATTCGACAGGGAAACTCTAATGGCTTATGTTGATAATTCCGTTCATTTAACAGGTCCAGGAGTACAACTTTGTGAACCGGTTTTTGAACAAGTTGCAAAAGAAATAATGAATAGTTTTTAAATTATTATTTTGGTTTTTCTCTACCGAATTTCATATCAATATATCTTTCGAATTTGATCTTATGAACTATGTA</canonical>
            <polymorphic>AGACAGACACAGACACCCCATTCCCAAAAAGCAACCTTAAAGGTTACTGTAGATATCCAGTGTGTAAAACCTTCCATTTTTTCTTTGTGATCCGAGTTATTTTCAGCCTGGAAATGGAAGTATCTCCATAATGATGCTAGGAAATAGTTATGTGATGAATCTTGGAGAGCATATCCGAGCTCATTTCAATTACAACTACTCGGATTACAGATACTTGTCGGTTTTAGCAAATTACGGACTCTATTCAGACCACACATTGGAATCGGCACAAGCATTGCAATTTTCAAAAAATCAAGTAGAATTATATAAACCTGATGTTCTTTTTGTGGTTTCCAGGTTAGTTTCTTTAGTTCCAAATTGCATACACTTTTAAAATCTTTTTTTTTTGTTTCTAGGTATATGGAAAACATTAAAAATCCTATTCAAAACAACGATCCTATAGTCCGGGAGATAAATGAGACTATAGCATACTATGAAAAGTAAGTACAACTGCGAATAARTATTATTTTTCCACATTTTCAGATTCGTTAAAAAGCTCTACATTCTCGACGCTCATCCGATGTATCATGAAAACTTTCTGAACCTTTTCCTTCATTTTGTGATTACGAGACCCGATGATTTGGACGTTCTCCATCTGGACAAAAAACTAGCAGATGATGAAATGAGGCCGGTTAAGAAACGGTTTGCAGAAATAAAATGCAAGAAGTGTCATGTAAGTTTTGACACAGGGACGATAAAATTAACAATATCATTTTGCAGTTCTTCGATTTGAGTCACGTGTTTGTTGATGGAGATAAATACCTAACATTCGACAGGGAAACTCTAATGGCTTATGTTGATAATTCCGTTCATTTAACAGGTCCAGGAGTACAACTTTGTGAACCGGTTTTTGAACAAGTTGCAAAAGAAATAATGAATAGTTTTTAAATTATTATTTTGGTTTTTCTCTACCGAATTTCATATCAATATATCTTTCGAATTTGATCTTATGAACTATGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAAAACAACGATCCTATAGTC</pcr_primer_p1>
		<pcr_primer_p2>CTCATTTCATCATCTGCTAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTCAAAACAACGATCCTATAGTCCGGGAGATAAATGAGACTATAGCATACTATGAAAAGTAAGTACAACTGCGAATAAGTATTATTTTTCCACATTTTCAGATTCGTTAAAAAGCTCTACATTCTCGACGCTCATCCGATGTATCATGAAAACTTTCTGAACCTTTTCCTTCATTTTGTGATTACGAGACCCGATGATTTGGACGTTCTCCATCTGGACAAAAAACTAGCAGATGATGAAATGAG</canonical_amplicon>
		<polymorphic_amplicon>TTCAAAACAACGATCCTATAGTCCGGGAGATAAATGAGACTATAGCATACTATGAAAAGTAAGTACAACTGCGAATAARTATTATTTTTCCACATTTTCAGATTCGTTAAAAAGCTCTACATTCTCGACGCTCATCCGATGTATCATGAAAACTTTCTGAACCTTTTCCTTCATTTTGTGATTACGAGACCCGATGATTTGGACGTTCTCCATCTGGACAAAAAACTAGCAGATGATGAAATGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9721</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>163660</contig_pos>
        <strand>+</strand>
        <context>CAGCCARKGC[G/T]GAAAACTTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCAAGGC</left_flank>
        <right_flank>GAAAACTTGTTTACTTCTTTCCGCTTGTGAGTTTTCTACATCATTCCGCT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTCATTCCTTATAATCGTTCGGAAGACTGCAAATTGGAAGAATGTAGGATGAACTTATTATTTTCCTTGCTATCGCTTAGCATCGCTCTACACAGAAAACACGGACTTACTATAGGTCAAAAATAACTGTATGAAACAAAAAAGGGACCTGATTTGAATTCTTACTACATGCGCGCCTTTTTACAAATTTCATGAATTACGGGTGTGTGAAAATTAGACGAAAACCGAAGACTTGCTTTAGGAAAATTTTTAGCTGTTCCCAAATGTTTAAATTCATTCAGGAGAATCTTGTCTCTATAATACCTCGTTATTATTCTGGATGTAGTCCTAGTTCATATTCAATCGAAAGATATTTCATGCAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCAAGGCGGAAAACTTGTTTACTTCTTTCCGCTTGTGAGTTTTCTACATCATTCCGCTTCAACAGCCTGTAAACATCACTGTTTTTATAATAAGCAACTAGAATGTGACCTCAAGCAAAACATTCGGTATGGCCGAATGTACAGTAGATATGTAAATGGAGAAAACATGGGCATAGGGAGAGTGCAAGCAAAAATTGAATATTCCAGAATCGGATGAGTGAAAATTCCAAGTTGTGCACTCAAGTACGAAATTACGCCAATCACGAAAATCATTGGAATGGCGGCTTGAATTGTGAGACACTAAAAAATGCTTTTTAGAAAAAGAATAAAAGAAAACTCTCACTTTTAGAATTTGAGAATGATACGATTTTAAATCATTAGAAAGCATTTCCGTCTTTCTTAATAAATTGTTCATAACCTCATGTCTCAATACAAAAATGGCCACATAAATTGGGAAAATTGGACCACAGAGATGAAGAATCACATAGATTGAGGCGAAATCTTTGAT</canonical>
            <polymorphic>TGTCATTCCTTATAATCGTTCGGAAGACTGCAAATTGGAAGAATGTAGGATGAACTTATTATTTTCCTTGCTATCGCTTAGCATCGCTCTACACAGAAAACACGGACTTACTATAGGTCAAAAATAACTGTATGAAACAAAAAAGGGACCTGATTTGAATTCTTACTACATGCGCGCCTTTTTACAAATTTCATGAATTACGGGTGTGTGAAAATTAGACGAAAACCGAAGACTTGCTTTAGGAAAATTTTTAGCTGTTCCCAAATGTTTAAATTCATTCAGGAGAATCTTGTCTCTATAATACCTCGTTATTATTCTGGATGTAGTCCTAGTTCATATTCAATCGAAAGATATTTCATGCAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCAAGGCKGAAAACTTGTTTACTTCTTTCCGCTTGTGAGTTTTCTACATCATTCCGCTTCAACAGCCTGTAAACATCACTGTTTTTATAATAAGCAACTAGAATGTGACCTCAAGCAAAACATTCGGTATGGCCGAATGTACAGTAGATATGTAAATGGAGAAAACATGGGCATAGGGAGAGTGCAAGCAAAAATTGAATATTCCAGAATCGGATGAGTGAAAATTCCAAGTTGTGCACTCAAGTACGAAATTACGCCAATCACGAAAATCATTGGAATGGCGGCTTGAATTGTGAGACACTAAAAAATGCTTTTTAGAAAAAGAATAAAAGAAAACTCTCACTTTTAGAATTTGAGAATGATACGATTTTAAATCATTAGAAAGCATTTCCGTCTTTCTTAATAAATTGTTCATAACCTCATGTCTCAATACAAAAATGGCCACATAAATTGGGAAAATTGGACCACAGAGATGAAGAATCACATAGATTGAGGCGAAATCTTTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>497 228 226 25 24</canonical_bands>
                <polymorphic_bands>521 228 226 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAGACAATAGCTCTTCATTCT</pcr_primer_p1>
		<pcr_primer_p2>GAGGTCACATTCTAGTTGCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCAAGGCGGAAAACTTGTTTACTTCTTTCCGCTTGTGAGTTTTCTACATCATTCCGCTTCAACAGCCTGTAAACATCACTGTTTTTATAATAAGCAACTAGAATGTGACCTC</canonical_amplicon>
		<polymorphic_amplicon>CAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCAAGGCKGAAAACTTGTTTACTTCTTTCCGCTTGTGAGTTTTCTACATCATTCCGCTTCAACAGCCTGTAAACATCACTGTTTTTATAATAAGCAACTAGAATGTGACCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9722</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>163657</contig_pos>
        <strand>+</strand>
        <context>TTTCAGCCAR[G/T]GCKGAAAACT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCAA</left_flank>
        <right_flank>GCGGAAAACTTGTTTACTTCTTTCCGCTTGTGAGTTTTCTACATCATTCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTGTCATTCCTTATAATCGTTCGGAAGACTGCAAATTGGAAGAATGTAGGATGAACTTATTATTTTCCTTGCTATCGCTTAGCATCGCTCTACACAGAAAACACGGACTTACTATAGGTCAAAAATAACTGTATGAAACAAAAAAGGGACCTGATTTGAATTCTTACTACATGCGCGCCTTTTTACAAATTTCATGAATTACGGGTGTGTGAAAATTAGACGAAAACCGAAGACTTGCTTTAGGAAAATTTTTAGCTGTTCCCAAATGTTTAAATTCATTCAGGAGAATCTTGTCTCTATAATACCTCGTTATTATTCTGGATGTAGTCCTAGTTCATATTCAATCGAAAGATATTTCATGCAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCAAGGCGGAAAACTTGTTTACTTCTTTCCGCTTGTGAGTTTTCTACATCATTCCGCTTCAACAGCCTGTAAACATCACTGTTTTTATAATAAGCAACTAGAATGTGACCTCAAGCAAAACATTCGGTATGGCCGAATGTACAGTAGATATGTAAATGGAGAAAACATGGGCATAGGGAGAGTGCAAGCAAAAATTGAATATTCCAGAATCGGATGAGTGAAAATTCCAAGTTGTGCACTCAAGTACGAAATTACGCCAATCACGAAAATCATTGGAATGGCGGCTTGAATTGTGAGACACTAAAAAATGCTTTTTAGAAAAAGAATAAAAGAAAACTCTCACTTTTAGAATTTGAGAATGATACGATTTTAAATCATTAGAAAGCATTTCCGTCTTTCTTAATAAATTGTTCATAACCTCATGTCTCAATACAAAAATGGCCACATAAATTGGGAAAATTGGACCACAGAGATGAAGAATCACATAGATTGAGGCGAAATCTTT</canonical>
            <polymorphic>TTGTGTCATTCCTTATAATCGTTCGGAAGACTGCAAATTGGAAGAATGTAGGATGAACTTATTATTTTCCTTGCTATCGCTTAGCATCGCTCTACACAGAAAACACGGACTTACTATAGGTCAAAAATAACTGTATGAAACAAAAAAGGGACCTGATTTGAATTCTTACTACATGCGCGCCTTTTTACAAATTTCATGAATTACGGGTGTGTGAAAATTAGACGAAAACCGAAGACTTGCTTTAGGAAAATTTTTAGCTGTTCCCAAATGTTTAAATTCATTCAGGAGAATCTTGTCTCTATAATACCTCGTTATTATTCTGGATGTAGTCCTAGTTCATATTCAATCGAAAGATATTTCATGCAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCAAKGCGGAAAACTTGTTTACTTCTTTCCGCTTGTGAGTTTTCTACATCATTCCGCTTCAACAGCCTGTAAACATCACTGTTTTTATAATAAGCAACTAGAATGTGACCTCAAGCAAAACATTCGGTATGGCCGAATGTACAGTAGATATGTAAATGGAGAAAACATGGGCATAGGGAGAGTGCAAGCAAAAATTGAATATTCCAGAATCGGATGAGTGAAAATTCCAAGTTGTGCACTCAAGTACGAAATTACGCCAATCACGAAAATCATTGGAATGGCGGCTTGAATTGTGAGACACTAAAAAATGCTTTTTAGAAAAAGAATAAAAGAAAACTCTCACTTTTAGAATTTGAGAATGATACGATTTTAAATCATTAGAAAGCATTTCCGTCTTTCTTAATAAATTGTTCATAACCTCATGTCTCAATACAAAAATGGCCACATAAATTGGGAAAATTGGACCACAGAGATGAAGAATCACATAGATTGAGGCGAAATCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>500 226 225 25 24</canonical_bands>
                <polymorphic_bands>524 226 225 25</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAGACAATAGCTCTTCATTCT</pcr_primer_p1>
		<pcr_primer_p2>GAGGTCACATTCTAGTTGCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCAAGGCGGAAAACTTGTTTACTTCTTTCCGCTTGTGAGTTTTCTACATCATTCCGCTTCAACAGCCTGTAAACATCACTGTTTTTATAATAAGCAACTAGAATGTGACCTC</canonical_amplicon>
		<polymorphic_amplicon>CAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCAAKGCGGAAAACTTGTTTACTTCTTTCCGCTTGTGAGTTTTCTACATCATTCCGCTTCAACAGCCTGTAAACATCACTGTTTTTATAATAAGCAACTAGAATGTGACCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9723</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>163656</contig_pos>
        <strand>+</strand>
        <context>TTTTCAGCCA[A/G]KGCKGAAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCA</left_flank>
        <right_flank>GGCGGAAAACTTGTTTACTTCTTTCCGCTTGTGAGTTTTCTACATCATTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGTGTCATTCCTTATAATCGTTCGGAAGACTGCAAATTGGAAGAATGTAGGATGAACTTATTATTTTCCTTGCTATCGCTTAGCATCGCTCTACACAGAAAACACGGACTTACTATAGGTCAAAAATAACTGTATGAAACAAAAAAGGGACCTGATTTGAATTCTTACTACATGCGCGCCTTTTTACAAATTTCATGAATTACGGGTGTGTGAAAATTAGACGAAAACCGAAGACTTGCTTTAGGAAAATTTTTAGCTGTTCCCAAATGTTTAAATTCATTCAGGAGAATCTTGTCTCTATAATACCTCGTTATTATTCTGGATGTAGTCCTAGTTCATATTCAATCGAAAGATATTTCATGCAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCAAGGCGGAAAACTTGTTTACTTCTTTCCGCTTGTGAGTTTTCTACATCATTCCGCTTCAACAGCCTGTAAACATCACTGTTTTTATAATAAGCAACTAGAATGTGACCTCAAGCAAAACATTCGGTATGGCCGAATGTACAGTAGATATGTAAATGGAGAAAACATGGGCATAGGGAGAGTGCAAGCAAAAATTGAATATTCCAGAATCGGATGAGTGAAAATTCCAAGTTGTGCACTCAAGTACGAAATTACGCCAATCACGAAAATCATTGGAATGGCGGCTTGAATTGTGAGACACTAAAAAATGCTTTTTAGAAAAAGAATAAAAGAAAACTCTCACTTTTAGAATTTGAGAATGATACGATTTTAAATCATTAGAAAGCATTTCCGTCTTTCTTAATAAATTGTTCATAACCTCATGTCTCAATACAAAAATGGCCACATAAATTGGGAAAATTGGACCACAGAGATGAAGAATCACATAGATTGAGGCGAAATCTT</canonical>
            <polymorphic>ATTGTGTCATTCCTTATAATCGTTCGGAAGACTGCAAATTGGAAGAATGTAGGATGAACTTATTATTTTCCTTGCTATCGCTTAGCATCGCTCTACACAGAAAACACGGACTTACTATAGGTCAAAAATAACTGTATGAAACAAAAAAGGGACCTGATTTGAATTCTTACTACATGCGCGCCTTTTTACAAATTTCATGAATTACGGGTGTGTGAAAATTAGACGAAAACCGAAGACTTGCTTTAGGAAAATTTTTAGCTGTTCCCAAATGTTTAAATTCATTCAGGAGAATCTTGTCTCTATAATACCTCGTTATTATTCTGGATGTAGTCCTAGTTCATATTCAATCGAAAGATATTTCATGCAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCARGGCGGAAAACTTGTTTACTTCTTTCCGCTTGTGAGTTTTCTACATCATTCCGCTTCAACAGCCTGTAAACATCACTGTTTTTATAATAAGCAACTAGAATGTGACCTCAAGCAAAACATTCGGTATGGCCGAATGTACAGTAGATATGTAAATGGAGAAAACATGGGCATAGGGAGAGTGCAAGCAAAAATTGAATATTCCAGAATCGGATGAGTGAAAATTCCAAGTTGTGCACTCAAGTACGAAATTACGCCAATCACGAAAATCATTGGAATGGCGGCTTGAATTGTGAGACACTAAAAAATGCTTTTTAGAAAAAGAATAAAAGAAAACTCTCACTTTTAGAATTTGAGAATGATACGATTTTAAATCATTAGAAAGCATTTCCGTCTTTCTTAATAAATTGTTCATAACCTCATGTCTCAATACAAAAATGGCCACATAAATTGGGAAAATTGGACCACAGAGATGAAGAATCACATAGATTGAGGCGAAATCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAGACAATAGCTCTTCATTCT</pcr_primer_p1>
		<pcr_primer_p2>GAGGTCACATTCTAGTTGCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCAAGGCGGAAAACTTGTTTACTTCTTTCCGCTTGTGAGTTTTCTACATCATTCCGCTTCAACAGCCTGTAAACATCACTGTTTTTATAATAAGCAACTAGAATGTGACCTC</canonical_amplicon>
		<polymorphic_amplicon>CAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCARGGCGGAAAACTTGTTTACTTCTTTCCGCTTGTGAGTTTTCTACATCATTCCGCTTCAACAGCCTGTAAACATCACTGTTTTTATAATAAGCAACTAGAATGTGACCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9724</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>163600</contig_pos>
        <strand></strand>
        <context>GTTCTACATG[G/A]GAAAGAAATA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATG</left_flank>
        <right_flank>GAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGTTCATATTCAATCAAAAGATTTGTGAAGTTTATAGTTCAGCCATCCTTCGAAATTGTGTCATTCCTTATAATCGTTCGGAAGACTGCAAATTGGAAGAATGTAGGATGAACTTATTATTTTCCTTGCTATCGCTTAGCATCGCTCTACACAGAAAACACGGACTTACTATAGGTCAAAAATAACTGTATGAAACAAAAAAGGGACCTGATTTGAATTCTTACTACATGCGCGCCTTTTTACAAATTTCATGAATTACGGGTGTGTGAAAATTAGACGAAAACCGAAGACTTGCTTTAGGAAAATTTTTAGCTGTTCCCAAATGTTTAAATTCATTCAGGAGAATCTTGTCTCTATAATACCTCGTTATTATTCTGGATGTAGTCCTAGTTCATATTCAATCGAAAGATATTTCATGCAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCAAGGCGGAAAACTTGTTTACTTCTTTCCGCTTGTGAGTTTTCTACATCATTCCGCTTCAACAGCCTGTAAACATCACTGTTTTTATAATAAGCAACTAGAATGTGACCTCAAGCAAAACATTCGGTATGGCCGAATGTACAGTAGATATGTAAATGGAGAAAACATGGGCATAGGGAGAGTGCAAGCAAAAATTGAATATTCCAGAATCGGATGAGTGAAAATTCCAAGTTGTGCACTCAAGTACGAAATTACGCCAATCACGAAAATCATTGGAATGGCGGCTTGAATTGTGAGACACTAAAAAATGCTTTTTAGAAAAAGAATAAAAGAAAACTCTCACTTTTAGAATTTGAGAATGATACGATTTTAAATCATTAGAAAGCATTTCCGTCTTTCTTAATAAATTGTTCATAACCTCATGTCTCAATACAAAAATGGCCACATA</canonical>
            <polymorphic>ATAGTTCATATTCAATCAAAAGATTTGTGAAGTTTATAGTTCAGCCATCCTTCGAAATTGTGTCATTCCTTATAATCGTTCGGAAGACTGCAAATTGGAAGAATGTAGGATGAACTTATTATTTTCCTTGCTATCGCTTAGCATCGCTCTACACAGAAAACACGGACTTACTATAGGTCAAAAATAACTGTATGAAACAAAAAAGGGACCTGATTTGAATTCTTACTACATGCGCGCCTTTTTACAAATTTCATGAATTACGGGTGTGTGAAAATTAGACGAAAACCGAAGACTTGCTTTAGGAAAATTTTTAGCTGTTCCCAAATGTTTAAATTCATTCAGGAGAATCTTGTCTCTATAATACCTCGTTATTATTCTGGATGTAGTCCTAGTTCATATTCAATCGAAAGATATTTCATGCAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGRGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCAAGGCGGAAAACTTGTTTACTTCTTTCCGCTTGTGAGTTTTCTACATCATTCCGCTTCAACAGCCTGTAAACATCACTGTTTTTATAATAAGCAACTAGAATGTGACCTCAAGCAAAACATTCGGTATGGCCGAATGTACAGTAGATATGTAAATGGAGAAAACATGGGCATAGGGAGAGTGCAAGCAAAAATTGAATATTCCAGAATCGGATGAGTGAAAATTCCAAGTTGTGCACTCAAGTACGAAATTACGCCAATCACGAAAATCATTGGAATGGCGGCTTGAATTGTGAGACACTAAAAAATGCTTTTTAGAAAAAGAATAAAAGAAAACTCTCACTTTTAGAATTTGAGAATGATACGATTTTAAATCATTAGAAAGCATTTCCGTCTTTCTTAATAAATTGTTCATAACCTCATGTCTCAATACAAAAATGGCCACATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCAGGAGAATCTTGTCTCTA</pcr_primer_p1>
		<pcr_primer_p2>AGCGGAAAGAAGTAAACAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTCAGGAGAATCTTGTCTCTATAATACCTCGTTATTATTCTGGATGTAGTCCTAGTTCATATTCAATCGAAAGATATTTCATGCAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCAAGGCGGAAAACTTGTTTACTTCTTTCCGCT</canonical_amplicon>
		<polymorphic_amplicon>CATTCAGGAGAATCTTGTCTCTATAATACCTCGTTATTATTCTGGATGTAGTCCTAGTTCATATTCAATCGAAAGATATTTCATGCAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGRGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCAAGGCGGAAAACTTGTTTACTTCTTTCCGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9725</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>163471</contig_pos>
        <strand>+</strand>
        <context>WTACCTCGTT[A/T]TTATTCTGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCAAATGTTTAAATTCATTCAGGAGAATCTTGTCTCTATAATACCTCGTT</left_flank>
        <right_flank>TTATTCTGGATGTAGTCCTAGTTCATATTCAATCGAAAGATATTTCATGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCAAGAAAATAAATCCGGAAATTAAAAATGCTCTTAGGTTGCGTTGTGAGACATTCGGCCATGGCCGTTTTTTTTCCATATCTCCGATTGTTATATCAAAGTTATAATAGTCTCGAAGTAATCCTAAATAGTTCATATTCAATCAAAAGATTTGTGAAGTTTATAGTTCAGCCATCCTTCGAAATTGTGTCATTCCTTATAATCGTTCGGAAGACTGCAAATTGGAAGAATGTAGGATGAACTTATTATTTTCCTTGCTATCGCTTAGCATCGCTCTACACAGAAAACACGGACTTACTATAGGTCAAAAATAACTGTATGAAACAAAAAAGGGACCTGATTTGAATTCTTACTACATGCGCGCCTTTTTACAAATTTCATGAATTACGGGTGTGTGAAAATTAGACGAAAACCGAAGACTTGCTTTAGGAAAATTTTTAGCTGTTCCCAAATGTTTAAATTCATTCAGGAGAATCTTGTCTCTATAATACCTCGTTATTATTCTGGATGTAGTCCTAGTTCATATTCAATCGAAAGATATTTCATGCAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCAAGGCGGAAAACTTGTTTACTTCTTTCCGCTTGTGAGTTTTCTACATCATTCCGCTTCAACAGCCTGTAAACATCACTGTTTTTATAATAAGCAACTAGAATGTGACCTCAAGCAAAACATTCGGTATGGCCGAATGTACAGTAGATATGTAAATGGAGAAAACATGGGCATAGGGAGAGTGCAAGCAAAAATTGAATATTCCAGAATCGGATGAGTGAAAATTCCAAGTTGTGCACTCAAGTACGAAATTACGCCAATCACGAAAATCATTGGAATGGCGGCTTGAATTGTGAGACACTAAAAAATGCTTTTTAGA</canonical>
            <polymorphic>AATCAAGAAAATAAATCCGGAAATTAAAAATGCTCTTAGGTTGCGTTGTGAGACATTCGGCCATGGCCGTTTTTTTTCCATATCTCCGATTGTTATATCAAAGTTATAATAGTCTCGAAGTAATCCTAAATAGTTCATATTCAATCAAAAGATTTGTGAAGTTTATAGTTCAGCCATCCTTCGAAATTGTGTCATTCCTTATAATCGTTCGGAAGACTGCAAATTGGAAGAATGTAGGATGAACTTATTATTTTCCTTGCTATCGCTTAGCATCGCTCTACACAGAAAACACGGACTTACTATAGGTCAAAAATAACTGTATGAAACAAAAAAGGGACCTGATTTGAATTCTTACTACATGCGCGCCTTTTTACAAATTTCATGAATTACGGGTGTGTGAAAATTAGACGAAAACCGAAGACTTGCTTTAGGAAAATTTTTAGCTGTTCCCAAATGTTTAAATTCATTCAGGAGAATCTTGTCTCTATAATACCTCGTTWTTATTCTGGATGTAGTCCTAGTTCATATTCAATCGAAAGATATTTCATGCAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCAAGGCGGAAAACTTGTTTACTTCTTTCCGCTTGTGAGTTTTCTACATCATTCCGCTTCAACAGCCTGTAAACATCACTGTTTTTATAATAAGCAACTAGAATGTGACCTCAAGCAAAACATTCGGTATGGCCGAATGTACAGTAGATATGTAAATGGAGAAAACATGGGCATAGGGAGAGTGCAAGCAAAAATTGAATATTCCAGAATCGGATGAGTGAAAATTCCAAGTTGTGCACTCAAGTACGAAATTACGCCAATCACGAAAATCATTGGAATGGCGGCTTGAATTGTGAGACACTAAAAAATGCTTTTTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTTAGGAAAATTTTTAGCTGT</pcr_primer_p1>
		<pcr_primer_p2>AATGCAAGATTCGTTAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCTTTAGGAAAATTTTTAGCTGTTCCCAAATGTTTAAATTCATTCAGGAGAATCTTGTCTCTATAATACCTCGTTATTATTCTGGATGTAGTCCTAGTTCATATTCAATCGAAAGATATTTCATGCAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATT</canonical_amplicon>
		<polymorphic_amplicon>GCTTTAGGAAAATTTTTAGCTGTTCCCAAATGTTTAAATTCATTCAGGAGAATCTTGTCTCTATAATACCTCGTTWTTATTCTGGATGTAGTCCTAGTTCATATTCAATCGAAAGATATTTCATGCAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9726</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>163461</contig_pos>
        <strand>+</strand>
        <context>TGTCTCTATA[A/T]TACCTCGTTW</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAGCTGTTCCCAAATGTTTAAATTCATTCAGGAGAATCTTGTCTCTATA</left_flank>
        <right_flank>TACCTCGTTATTATTCTGGATGTAGTCCTAGTTCATATTCAATCGAAAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGCACGAAAATCAAGAAAATAAATCCGGAAATTAAAAATGCTCTTAGGTTGCGTTGTGAGACATTCGGCCATGGCCGTTTTTTTTCCATATCTCCGATTGTTATATCAAAGTTATAATAGTCTCGAAGTAATCCTAAATAGTTCATATTCAATCAAAAGATTTGTGAAGTTTATAGTTCAGCCATCCTTCGAAATTGTGTCATTCCTTATAATCGTTCGGAAGACTGCAAATTGGAAGAATGTAGGATGAACTTATTATTTTCCTTGCTATCGCTTAGCATCGCTCTACACAGAAAACACGGACTTACTATAGGTCAAAAATAACTGTATGAAACAAAAAAGGGACCTGATTTGAATTCTTACTACATGCGCGCCTTTTTACAAATTTCATGAATTACGGGTGTGTGAAAATTAGACGAAAACCGAAGACTTGCTTTAGGAAAATTTTTAGCTGTTCCCAAATGTTTAAATTCATTCAGGAGAATCTTGTCTCTATAATACCTCGTTATTATTCTGGATGTAGTCCTAGTTCATATTCAATCGAAAGATATTTCATGCAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCAAGGCGGAAAACTTGTTTACTTCTTTCCGCTTGTGAGTTTTCTACATCATTCCGCTTCAACAGCCTGTAAACATCACTGTTTTTATAATAAGCAACTAGAATGTGACCTCAAGCAAAACATTCGGTATGGCCGAATGTACAGTAGATATGTAAATGGAGAAAACATGGGCATAGGGAGAGTGCAAGCAAAAATTGAATATTCCAGAATCGGATGAGTGAAAATTCCAAGTTGTGCACTCAAGTACGAAATTACGCCAATCACGAAAATCATTGGAATGGCGGCTTGAATTGTGAGACACTAAAAAAT</canonical>
            <polymorphic>AACGCACGAAAATCAAGAAAATAAATCCGGAAATTAAAAATGCTCTTAGGTTGCGTTGTGAGACATTCGGCCATGGCCGTTTTTTTTCCATATCTCCGATTGTTATATCAAAGTTATAATAGTCTCGAAGTAATCCTAAATAGTTCATATTCAATCAAAAGATTTGTGAAGTTTATAGTTCAGCCATCCTTCGAAATTGTGTCATTCCTTATAATCGTTCGGAAGACTGCAAATTGGAAGAATGTAGGATGAACTTATTATTTTCCTTGCTATCGCTTAGCATCGCTCTACACAGAAAACACGGACTTACTATAGGTCAAAAATAACTGTATGAAACAAAAAAGGGACCTGATTTGAATTCTTACTACATGCGCGCCTTTTTACAAATTTCATGAATTACGGGTGTGTGAAAATTAGACGAAAACCGAAGACTTGCTTTAGGAAAATTTTTAGCTGTTCCCAAATGTTTAAATTCATTCAGGAGAATCTTGTCTCTATAWTACCTCGTTATTATTCTGGATGTAGTCCTAGTTCATATTCAATCGAAAGATATTTCATGCAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCAAGGCGGAAAACTTGTTTACTTCTTTCCGCTTGTGAGTTTTCTACATCATTCCGCTTCAACAGCCTGTAAACATCACTGTTTTTATAATAAGCAACTAGAATGTGACCTCAAGCAAAACATTCGGTATGGCCGAATGTACAGTAGATATGTAAATGGAGAAAACATGGGCATAGGGAGAGTGCAAGCAAAAATTGAATATTCCAGAATCGGATGAGTGAAAATTCCAAGTTGTGCACTCAAGTACGAAATTACGCCAATCACGAAAATCATTGGAATGGCGGCTTGAATTGTGAGACACTAAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTTAGGAAAATTTTTAGCTGT</pcr_primer_p1>
		<pcr_primer_p2>AATGCAAGATTCGTTAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCTTTAGGAAAATTTTTAGCTGTTCCCAAATGTTTAAATTCATTCAGGAGAATCTTGTCTCTATAATACCTCGTTATTATTCTGGATGTAGTCCTAGTTCATATTCAATCGAAAGATATTTCATGCAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATT</canonical_amplicon>
		<polymorphic_amplicon>GCTTTAGGAAAATTTTTAGCTGTTCCCAAATGTTTAAATTCATTCAGGAGAATCTTGTCTCTATAWTACCTCGTTATTATTCTGGATGTAGTCCTAGTTCATATTCAATCGAAAGATATTTCATGCAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9727</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>163248</contig_pos>
        <strand>+</strand>
        <context>TTAGCATCGC[A/T]CTACACAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAGAATGTAGGATGAACTTATTATTTTCCTTGCTATCGCTTAGCATCGC</left_flank>
        <right_flank>CTACACAGAAAACACGGACTTACTATAGGTCAAAAATAACTGTATGAAAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCTGATTCCAATCTTCACTACATGCGTGTCGTTTACATAATTTATGGATCAAGTGGCAGAGAACAACTAGACAAAATACGGTAGCCTGAAAATCTTTGAACATTCGGTATTTATTGAATCGATTTCCACGGCTTTGCGTCGAGTTTTCTATTATTTTTCCCCCAAACAACTCGGAAAAGTTAATTTTGTAAAGTGAAAAAAATCGACTGAAAACGCACGAAAATCAAGAAAATAAATCCGGAAATTAAAAATGCTCTTAGGTTGCGTTGTGAGACATTCGGCCATGGCCGTTTTTTTTCCATATCTCCGATTGTTATATCAAAGTTATAATAGTCTCGAAGTAATCCTAAATAGTTCATATTCAATCAAAAGATTTGTGAAGTTTATAGTTCAGCCATCCTTCGAAATTGTGTCATTCCTTATAATCGTTCGGAAGACTGCAAATTGGAAGAATGTAGGATGAACTTATTATTTTCCTTGCTATCGCTTAGCATCGCTCTACACAGAAAACACGGACTTACTATAGGTCAAAAATAACTGTATGAAACAAAAAAGGGACCTGATTTGAATTCTTACTACATGCGCGCCTTTTTACAAATTTCATGAATTACGGGTGTGTGAAAATTAGACGAAAACCGAAGACTTGCTTTAGGAAAATTTTTAGCTGTTCCCAAATGTTTAAATTCATTCAGGAGAATCTTGTCTCTATAATACCTCGTTATTATTCTGGATGTAGTCCTAGTTCATATTCAATCGAAAGATATTTCATGCAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCAAGGCGGAAAACTTGTTTACTTCTTTCCGCTTGTGAGTTTTCTACATCATTCCGCTTCAACAGCCTGTAAACATCACTGTTTTTATAATAAGCA</canonical>
            <polymorphic>GATCTGATTCCAATCTTCACTACATGCGTGTCGTTTACATAATTTATGGATCAAGTGGCAGAGAACAACTAGACAAAATACGGTAGCCTGAAAATCTTTGAACATTCGGTATTTATTGAATCGATTTCCACGGCTTTGCGTCGAGTTTTCTATTATTTTTCCCCCAAACAACTCGGAAAAGTTAATTTTGTAAAGTGAAAAAAATCGACTGAAAACGCACGAAAATCAAGAAAATAAATCCGGAAATTAAAAATGCTCTTAGGTTGCGTTGTGAGACATTCGGCCATGGCCGTTTTTTTTCCATATCTCCGATTGTTATATCAAAGTTATAATAGTCTCGAAGTAATCCTAAATAGTTCATATTCAATCAAAAGATTTGTGAAGTTTATAGTTCAGCCATCCTTCGAAATTGTGTCATTCCTTATAATCGTTCGGAAGACTGCAAATTGGAAGAATGTAGGATGAACTTATTATTTTCCTTGCTATCGCTTAGCATCGCWCTACACAGAAAACACGGACTTACTATAGGTCAAAAATAACTGTATGAAACAAAAAAGGGACCTGATTTGAATTCTTACTACATGCGCGCCTTTTTACAAATTTCATGAATTACGGGTGTGTGAAAATTAGACGAAAACCGAAGACTTGCTTTAGGAAAATTTTTAGCTGTTCCCAAATGTTTAAATTCATTCAGGAGAATCTTGTCTCTATAATACCTCGTTATTATTCTGGATGTAGTCCTAGTTCATATTCAATCGAAAGATATTTCATGCAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCAAGGCGGAAAACTTGTTTACTTCTTTCCGCTTGTGAGTTTTCTACATCATTCCGCTTCAACAGCCTGTAAACATCACTGTTTTTATAATAAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTTTATAGTTCAGCCATCCT</pcr_primer_p1>
		<pcr_primer_p2>CTAATTTTCACACACCCGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGTTTATAGTTCAGCCATCCTTCGAAATTGTGTCATTCCTTATAATCGTTCGGAAGACTGCAAATTGGAAGAATGTAGGATGAACTTATTATTTTCCTTGCTATCGCTTAGCATCGCTCTACACAGAAAACACGGACTTACTATAGGTCAAAAATAACTGTATGAAACAAAAAAGGGACCTGATTTGAATTCTTACTACATGCGCGCCTTTTTACAAATTTCATGAATTACGGGTGTGTGAAAATTAG</canonical_amplicon>
		<polymorphic_amplicon>GAAGTTTATAGTTCAGCCATCCTTCGAAATTGTGTCATTCCTTATAATCGTTCGGAAGACTGCAAATTGGAAGAATGTAGGATGAACTTATTATTTTCCTTGCTATCGCTTAGCATCGCWCTACACAGAAAACACGGACTTACTATAGGTCAAAAATAACTGTATGAAACAAAAAAGGGACCTGATTTGAATTCTTACTACATGCGCGCCTTTTTACAAATTTCATGAATTACGGGTGTGTGAAAATTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9728</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>163189</contig_pos>
        <strand>+</strand>
        <context>TTCGGAAGAC[A/T]GCAAATKGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTCAGCCATCCTTCGAAATTGTGTCATTCCTTATAATCGTTCGGAAGAC</left_flank>
        <right_flank>GCAAATTGGAAGAATGTAGGATGAACTTATTATTTTCCTTGCTATCGCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTTCCTATCGGTTAGCATTACACTATAGACCAAAAATAAATTTATGAAATAAAAAGGGATCTGATTCCAATCTTCACTACATGCGTGTCGTTTACATAATTTATGGATCAAGTGGCAGAGAACAACTAGACAAAATACGGTAGCCTGAAAATCTTTGAACATTCGGTATTTATTGAATCGATTTCCACGGCTTTGCGTCGAGTTTTCTATTATTTTTCCCCCAAACAACTCGGAAAAGTTAATTTTGTAAAGTGAAAAAAATCGACTGAAAACGCACGAAAATCAAGAAAATAAATCCGGAAATTAAAAATGCTCTTAGGTTGCGTTGTGAGACATTCGGCCATGGCCGTTTTTTTTCCATATCTCCGATTGTTATATCAAAGTTATAATAGTCTCGAAGTAATCCTAAATAGTTCATATTCAATCAAAAGATTTGTGAAGTTTATAGTTCAGCCATCCTTCGAAATTGTGTCATTCCTTATAATCGTTCGGAAGACTGCAAATTGGAAGAATGTAGGATGAACTTATTATTTTCCTTGCTATCGCTTAGCATCGCTCTACACAGAAAACACGGACTTACTATAGGTCAAAAATAACTGTATGAAACAAAAAAGGGACCTGATTTGAATTCTTACTACATGCGCGCCTTTTTACAAATTTCATGAATTACGGGTGTGTGAAAATTAGACGAAAACCGAAGACTTGCTTTAGGAAAATTTTTAGCTGTTCCCAAATGTTTAAATTCATTCAGGAGAATCTTGTCTCTATAATACCTCGTTATTATTCTGGATGTAGTCCTAGTTCATATTCAATCGAAAGATATTTCATGCAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCAAGGCGGAAAACTTGTTTACTTCTTTCCGCTTGTG</canonical>
            <polymorphic>TCTTTCCTATCGGTTAGCATTACACTATAGACCAAAAATAAATTTATGAAATAAAAAGGGATCTGATTCCAATCTTCACTACATGCGTGTCGTTTACATAATTTATGGATCAAGTGGCAGAGAACAACTAGACAAAATACGGTAGCCTGAAAATCTTTGAACATTCGGTATTTATTGAATCGATTTCCACGGCTTTGCGTCGAGTTTTCTATTATTTTTCCCCCAAACAACTCGGAAAAGTTAATTTTGTAAAGTGAAAAAAATCGACTGAAAACGCACGAAAATCAAGAAAATAAATCCGGAAATTAAAAATGCTCTTAGGTTGCGTTGTGAGACATTCGGCCATGGCCGTTTTTTTTCCATATCTCCGATTGTTATATCAAAGTTATAATAGTCTCGAAGTAATCCTAAATAGTTCATATTCAATCAAAAGATTTGTGAAGTTTATAGTTCAGCCATCCTTCGAAATTGTGTCATTCCTTATAATCGTTCGGAAGACWGCAAATTGGAAGAATGTAGGATGAACTTATTATTTTCCTTGCTATCGCTTAGCATCGCTCTACACAGAAAACACGGACTTACTATAGGTCAAAAATAACTGTATGAAACAAAAAAGGGACCTGATTTGAATTCTTACTACATGCGCGCCTTTTTACAAATTTCATGAATTACGGGTGTGTGAAAATTAGACGAAAACCGAAGACTTGCTTTAGGAAAATTTTTAGCTGTTCCCAAATGTTTAAATTCATTCAGGAGAATCTTGTCTCTATAATACCTCGTTATTATTCTGGATGTAGTCCTAGTTCATATTCAATCGAAAGATATTTCATGCAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCAAGGCGGAAAACTTGTTTACTTCTTTCCGCTTGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>501 330 123 46</canonical_bands>
                <polymorphic_bands>831 123 46</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGTTTATAGTTCAGCCATCCT</pcr_primer_p1>
		<pcr_primer_p2>CTAATTTTCACACACCCGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGTTTATAGTTCAGCCATCCTTCGAAATTGTGTCATTCCTTATAATCGTTCGGAAGACTGCAAATTGGAAGAATGTAGGATGAACTTATTATTTTCCTTGCTATCGCTTAGCATCGCTCTACACAGAAAACACGGACTTACTATAGGTCAAAAATAACTGTATGAAACAAAAAAGGGACCTGATTTGAATTCTTACTACATGCGCGCCTTTTTACAAATTTCATGAATTACGGGTGTGTGAAAATTAG</canonical_amplicon>
		<polymorphic_amplicon>GAAGTTTATAGTTCAGCCATCCTTCGAAATTGTGTCATTCCTTATAATCGTTCGGAAGACWGCAAATTGGAAGAATGTAGGATGAACTTATTATTTTCCTTGCTATCGCTTAGCATCGCTCTACACAGAAAACACGGACTTACTATAGGTCAAAAATAACTGTATGAAACAAAAAAGGGACCTGATTTGAATTCTTACTACATGCGCGCCTTTTTACAAATTTCATGAATTACGGGTGTGTGAAAATTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9729</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>223604</contig_pos>
        <strand>+</strand>
        <context>TCTTTTTTTG[C/T]TTCCACCCCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTCATCGTCGCCCTTTTAGAGGAATTCACTTTCAGTGTTTCTTTTTTTG</left_flank>
        <right_flank>TTCCACCCCGAAATATCTCAACTTCTTCACCTTCATTCGTTTTTACGCAC</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCACCTTAATCGCCCTCTCGACTATTCTTCGGCTTTCTGTTTCTTAGATATCACCATAAAACGGCTTCAAATTCCTTTTTGTCCGTTGCTTCTCCCCTTTTGTATTGAATATCTTTCCCTTTTTCATCACCTCTCCATATGTCTCTAATCATATCTTTTTATCCAGTCGACCTCGCCCACATTCAACATTGCTGAAAAAAACCCGCTCTGTCCTCTGTATCCTTGGCTTTTGTGATAAACCTTGATATCTTAAGACCTCCTCTCTCCTTTCTCCTTCTCCGCCTGTTACGCAACATCTAGTGTACACTTTTGGCATCATCCAATGAAGCTCTCCCTAATTGGTACGATATCTTCTCTATCCACTTCCTGCCATCGAACGAACACGAACATTGCCATCAGAAGACGATTAACTTGTTTCTTCATCCTTCCCCCTTTTTCCCCTTTTTTCCTCATCGTCGCCCTTTTAGAGGAATTCACTTTCAGTGTTTCTTTTTTTGCTTCCACCCCGAAATATCTCAACTTCTTCACCTTCATTCGTTTTTACGCACTCTCTCTACAACCGATTCGCTTTCGACAATTTGTTCCATCCGAAGCAAAAACACTGAGAAATGAGATGTGAAAGTTTCGCCCCCGGACGGATTACAAAAAGTAAAAACGATCGAATTTGGCGATAGGGATTTTGCATGGTAGACAACCATGCCATTCTGGATTCTGATGTTGGTTCGATGTGTCTCACCTTTTTGATATTCTGGAAAATACATTTTTCAATGATCTCTATCAATAATTGAACTTAGCCCTTCATTCCATACCTCATTCTTTTTTTTAAATATACCGTAAACACTCTAATAAAGTTCCACCCAACTCGTCAACTTTGAGCCCATATATCTCATTTTCTGTGCAACATATCAAAAAGTGGTAAAGTGTTAAAATGGTTTTGATATTATAGTGAACATTTTACCAGTTGACCACTTTCAGATATCTTTCACAGAAAATGAGAT</canonical>
            <polymorphic>ATCCACCTTAATCGCCCTCTCGACTATTCTTCGGCTTTCTGTTTCTTAGATATCACCATAAAACGGCTTCAAATTCCTTTTTGTCCGTTGCTTCTCCCCTTTTGTATTGAATATCTTTCCCTTTTTCATCACCTCTCCATATGTCTCTAATCATATCTTTTTATCCAGTCGACCTCGCCCACATTCAACATTGCTGAAAAAAACCCGCTCTGTCCTCTGTATCCTTGGCTTTTGTGATAAACCTTGATATCTTAAGACCTCCTCTCTCCTTTCTCCTTCTCCGCCTGTTACGCAACATCTAGTGTACACTTTTGGCATCATCCAATGAAGCTCTCCCTAATTGGTACGATATCTTCTCTATCCACTTCCTGCCATCGAACGAACACGAACATTGCCATCAGAAGACGATTAACTTGTTTCTTCATCCTTCCCCCTTTTTCCCCTTTTTTCCTCATCGTCGCCCTTTTAGAGGAATTCACTTTCAGTGTTTCTTTTTTTGYTTCCACCCCGAAATATCTCAACTTCTTCACCTTCATTCGTTTTTACGCACTCTCTCTACAACCGATTCGCTTTCGACAATTTGTTCCATCCGAAGCAAAAACACTGAGAAATGAGATGTGAAAGTTTCGCCCCCGGACGGATTACAAAAAGTAAAAACGATCGAATTTGGCGATAGGGATTTTGCATGGTAGACAACCATGCCATTCTGGATTCTGATGTTGGTTCGATGTGTCTCACCTTTTTGATATTCTGGAAAATACATTTTTCAATGATCTCTATCAATAATTGAACTTAGCCCTTCATTCCATACCTCATTCTTTTTTTTAAATATACCGTAAACACTCTAATAAAGTTCCACCCAACTCGTCAACTTTGAGCCCATATATCTCATTTTCTGTGCAACATATCAAAAAGTGGTAAAGTGTTAAAATGGTTTTGATATTATAGTGAACATTTTACCAGTTGACCACTTTCAGATATCTTTCACAGAAAATGAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTACGATATCTTCTCTATCC</pcr_primer_p1>
		<pcr_primer_p2>ATGGAACAAATTGTCGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGGTACGATATCTTCTCTATCCACTTCCTGCCATCGAACGAACACGAACATTGCCATCAGAAGACGATTAACTTGTTTCTTCATCCTTCCCCCTTTTTCCCCTTTTTTCCTCATCGTCGCCCTTTTAGAGGAATTCACTTTCAGTGTTTCTTTTTTTGCTTCCACCCCGAAATATCTCAACTTCTTCACCTTCATTCGTTTTTACGCACTCTCTCTACAACCGATTCGCTTTCGACAATTTGTTCCAT</canonical_amplicon>
		<polymorphic_amplicon>TTGGTACGATATCTTCTCTATCCACTTCCTGCCATCGAACGAACACGAACATTGCCATCAGAAGACGATTAACTTGTTTCTTCATCCTTCCCCCTTTTTCCCCTTTTTTCCTCATCGTCGCCCTTTTAGAGGAATTCACTTTCAGTGTTTCTTTTTTTGYTTCCACCCCGAAATATCTCAACTTCTTCACCTTCATTCGTTTTTACGCACTCTCTCTACAACCGATTCGCTTTCGACAATTTGTTCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9730</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>223874</contig_pos>
        <strand>+</strand>
        <context>ACATTTTTCA[A/G]TGATCTCTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGGTTCGATGTGTCTCACCTTTTTGATATTCTGGAAAATACATTTTTCA</left_flank>
        <right_flank>TGATCTCTATCAATAATTGAACTTAGCCCTTCATTCCATACCTCATTCTT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTCCTTCTCCGCCTGTTACGCAACATCTAGTGTACACTTTTGGCATCATCCAATGAAGCTCTCCCTAATTGGTACGATATCTTCTCTATCCACTTCCTGCCATCGAACGAACACGAACATTGCCATCAGAAGACGATTAACTTGTTTCTTCATCCTTCCCCCTTTTTCCCCTTTTTTCCTCATCGTCGCCCTTTTAGAGGAATTCACTTTCAGTGTTTCTTTTTTTGCTTCCACCCCGAAATATCTCAACTTCTTCACCTTCATTCGTTTTTACGCACTCTCTCTACAACCGATTCGCTTTCGACAATTTGTTCCATCCGAAGCAAAAACACTGAGAAATGAGATGTGAAAGTTTCGCCCCCGGACGGATTACAAAAAGTAAAAACGATCGAATTTGGCGATAGGGATTTTGCATGGTAGACAACCATGCCATTCTGGATTCTGATGTTGGTTCGATGTGTCTCACCTTTTTGATATTCTGGAAAATACATTTTTCAATGATCTCTATCAATAATTGAACTTAGCCCTTCATTCCATACCTCATTCTTTTTTTTAAATATACCGTAAACACTCTAATAAAGTTCCACCCAACTCGTCAACTTTGAGCCCATATATCTCATTTTCTGTGCAACATATCAAAAAGTGGTAAAGTGTTAAAATGGTTTTGATATTATAGTGAACATTTTACCAGTTGACCACTTTCAGATATCTTTCACAGAAAATGAGATACATCGGCTAAAAGTTAAAGGTTCGGTGGAGTGCTATTAGAGCGTTTACGGTAGCTCTTTGATCCCAAAAATCTCCTGATGGCTATTTACTTTGAGTCCATATATCTCATTTCCTGTAAAAGATGTCAAAAAAGGCTAACAAACAAAATATTTACCATAATATCAGCAACATTTTATCAGTTGACAGATTTTTGATACCTTTGACAGGAACAGAGATAAATTGGCTCAAATTTAGAAATTAGCAAGCTCTTCTATTAAAGTTTCTACGGT</canonical>
            <polymorphic>TTCTCCTTCTCCGCCTGTTACGCAACATCTAGTGTACACTTTTGGCATCATCCAATGAAGCTCTCCCTAATTGGTACGATATCTTCTCTATCCACTTCCTGCCATCGAACGAACACGAACATTGCCATCAGAAGACGATTAACTTGTTTCTTCATCCTTCCCCCTTTTTCCCCTTTTTTCCTCATCGTCGCCCTTTTAGAGGAATTCACTTTCAGTGTTTCTTTTTTTGCTTCCACCCCGAAATATCTCAACTTCTTCACCTTCATTCGTTTTTACGCACTCTCTCTACAACCGATTCGCTTTCGACAATTTGTTCCATCCGAAGCAAAAACACTGAGAAATGAGATGTGAAAGTTTCGCCCCCGGACGGATTACAAAAAGTAAAAACGATCGAATTTGGCGATAGGGATTTTGCATGGTAGACAACCATGCCATTCTGGATTCTGATGTTGGTTCGATGTGTCTCACCTTTTTGATATTCTGGAAAATACATTTTTCARTGATCTCTATCAATAATTGAACTTAGCCCTTCATTCCATACCTCATTCTTTTTTTTAAATATACCGTAAACACTCTAATAAAGTTCCACCCAACTCGTCAACTTTGAGCCCATATATCTCATTTTCTGTGCAACATATCAAAAAGTGGTAAAGTGTTAAAATGGTTTTGATATTATAGTGAACATTTTACCAGTTGACCACTTTCAGATATCTTTCACAGAAAATGAGATACATCGGCTAAAAGTTAAAGGTTCGGTGGAGTGCTATTAGAGCGTTTACGGTAGCTCTTTGATCCCAAAAATCTCCTGATGGCTATTTACTTTGAGTCCATATATCTCATTTCCTGTAAAAGATGTCAAAAAAGGCTAACAAACAAAATATTTACCATAATATCAGCAACATTTTATCAGTTGACAGATTTTTGATACCTTTGACAGGAACAGAGATAAATTGGCTCAAATTTAGAAATTAGCAAGCTCTTCTATTAAAGTTTCTACGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACACTGAGAAATGAGATGT</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGAATGAGGTATGGAATG</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>AAAAACACTGAGAAATGAGATGTGAAAGTTTCGCCCCCGGACGGATTACAAAAAGTAAAAACGATCGAATTTGGCGATAGGGATTTTGCATGGTAGACAACCATGCCATTCTGGATTCTGATGTTGGTTCGATGTGTCTCACCTTTTTGATATTCTGGAAAATACATTTTTCAATGATCTCTATCAATAATTGAACTTAGCCCTTCATTCCATACCTCATTCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAACACTGAGAAATGAGATGTGAAAGTTTCGCCCCCGGACGGATTACAAAAAGTAAAAACGATCGAATTTGGCGATAGGGATTTTGCATGGTAGACAACCATGCCATTCTGGATTCTGATGTTGGTTCGATGTGTCTCACCTTTTTGATATTCTGGAAAATACATTTTTCARTGATCTCTATCAATAATTGAACTTAGCCCTTCATTCCATACCTCATTCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9731</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>225250</contig_pos>
        <strand>+</strand>
        <context>CCCATACGTT[G/T]ACCTCAATTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGAAGACACATCAGACTTGGCTATGTGCCAAGACTGGCATCCCATACGTT</left_flank>
        <right_flank>ACCTCAATTATCTTGGTTCTAGTGAAAAATATAAAATAGGTACTTGCCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTCGGATTTATTACCCGAAATTGGCTCGTAAATCACGCGTTCTTCATCATTTAGTTTTCCCGAAATCCAAAGCAGACCAAAAGAAGAACAAGAAGAAGCTAATTCGGTGTCATCATCTATCAGAGACGCTCGCTGACCGGCCAAGAATAAGAAGAAGCTGATTGGAAAGAGAAAAAAGCTTCGGGAGACCGTTGTCCGTCGAGACCGTCATTTCTTTTCTCCCCCTTTCGTTTCAACCGCTTCATGTCTCTTGCTTCTCGGGATAGAAATTTCTGTCTCTTCGTGTTATAATTGATCCGTTTCACCAGATAATATACAATTTCAACTTCTCCCCCCCCCTTTGTTTCCCTTTTTCGCACTTCTCACTTCCCCCCAGTTTCAAATGTTGCTTCTTTCTTCTAGCTTCCACAGTGACGTTATCATCCAGTAACCAGTTTTATCCCGATAAGAAGACACATCAGACTTGGCTATGTGCCAAGACTGGCATCCCATACGTTTACCTCAATTATCTTGGTTCTAGTGAAAAATATAAAATAGGTACTTGCCAGCTAGAATGTTCTACGAACGTTTTATCAATTAAATTTTCGATATCTCCCCCCAGAACACTAAATAAAGGGTCCATAGGTACTGTAGTGCCAGTGTATTAAAGAAAACTAAAAACTTTCAAAAAAGAATTAGTCAGTAAGCCCCAGCTAAAGGCAAACCGATAGCGCAAGTCCTATCATCCATGACGAATCCTTCCTTTAGTTTTGCAATACTACAAAAACTGTCCAGAAGCAGCACAGAGTTATATTATTCTTCTTCTTGTTCATCTTCTGCATTGTCGCCCCTTCCTCGGAAATGTTCATCTTCGTCTTCTTCTTCTTCTCCATCGTCCATCGTGGGGCCCCTCTGGTCATGTATCGCCTTCTCACACCGTAATCCTGTCTTCGTGTTCGGCAGTCTGCGTCTACGACTCCTTCGACAAGCTTCTTCTCTCTTTTCTTAGATTGTCGGAT</canonical>
            <polymorphic>ACTTCGGATTTATTACCCGAAATTGGCTCGTAAATCACGCGTTCTTCATCATTTAGTTTTCCCGAAATCCAAAGCAGACCAAAAGAAGAACAAGAAGAAGCTAATTCGGTGTCATCATCTATCAGAGACGCTCGCTGACCGGCCAAGAATAAGAAGAAGCTGATTGGAAAGAGAAAAAAGCTTCGGGAGACCGTTGTCCGTCGAGACCGTCATTTCTTTTCTCCCCCTTTCGTTTCAACCGCTTCATGTCTCTTGCTTCTCGGGATAGAAATTTCTGTCTCTTCGTGTTATAATTGATCCGTTTCACCAGATAATATACAATTTCAACTTCTCCCCCCCCCTTTGTTTCCCTTTTTCGCACTTCTCACTTCCCCCCAGTTTCAAATGTTGCTTCTTTCTTCTAGCTTCCACAGTGACGTTATCATCCAGTAACCAGTTTTATCCCGATAAGAAGACACATCAGACTTGGCTATGTGCCAAGACTGGCATCCCATACGTTKACCTCAATTATCTTGGTTCTAGTGAAAAATATAAAATAGGTACTTGCCAGCTAGAATGTTCTACGAACGTTTTATCAATTAAATTTTCGATATCTCCCCCCAGAACACTAAATAAAGGGTCCATAGGTACTGTAGTGCCAGTGTATTAAAGAAAACTAAAAACTTTCAAAAAAGAATTAGTCAGTAAGCCCCAGCTAAAGGCAAACCGATAGCGCAAGTCCTATCATCCATGACGAATCCTTCCTTTAGTTTTGCAATACTACAAAAACTGTCCAGAAGCAGCACAGAGTTATATTATTCTTCTTCTTGTTCATCTTCTGCATTGTCGCCCCTTCCTCGGAAATGTTCATCTTCGTCTTCTTCTTCTTCTCCATCGTCCATCGTGGGGCCCCTCTGGTCATGTATCGCCTTCTCACACCGTAATCCTGTCTTCGTGTTCGGCAGTCTGCGTCTACGACTCCTTCGACAAGCTTCTTCTCTCTTTTCTTAGATTGTCGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAATGTTGCTTCTTTCTTCTA</pcr_primer_p1>
		<pcr_primer_p2>ACCTATGGACCCTTTATTTAGTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCAAATGTTGCTTCTTTCTTCTAGCTTCCACAGTGACGTTATCATCCAGTAACCAGTTTTATCCCGATAAGAAGACACATCAGACTTGGCTATGTGCCAAGACTGGCATCCCATACGTTTACCTCAATTATCTTGGTTCTAGTGAAAAATATAAAATAGGTACTTGCCAGCTAGAATGTTCTACGAACGTTTTATCAATTAAATTTTCGATATCTCCCCCCAGAACACTAAATAAAGGGTCCATAGGT</canonical_amplicon>
		<polymorphic_amplicon>TCAAATGTTGCTTCTTTCTTCTAGCTTCCACAGTGACGTTATCATCCAGTAACCAGTTTTATCCCGATAAGAAGACACATCAGACTTGGCTATGTGCCAAGACTGGCATCCCATACGTTKACCTCAATTATCTTGGTTCTAGTGAAAAATATAAAATAGGTACTTGCCAGCTAGAATGTTCTACGAACGTTTTATCAATTAAATTTTCGATATCTCCCCCCAGAACACTAAATAAAGGGTCCATAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9732</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>312411</contig_pos>
        <strand>+</strand>
        <context>ACGAATTGCA[A/T]GTCGGTATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGCTCTTGCTGATTGAGGGCTCGCTAATCCGAACAACCGACGAATTGCA</left_flank>
        <right_flank>GTCGGTATTCCGTACTGAAATCAAACTTAAGAGAATGAAAAAAGAGAGTC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTAGTAGACAATCCGGATTACACGAAGAAATACTCAACTAGCAATTACTATGGTGCAGCAAAACAGAAACGGTCTTATAACGTTTTGATAACAGACTCCAGAAGAGCATCGATGCCAGTATGCGTTCAACAAATTGCCATTTCTAACTCTACAGCTCCAATTCTAAAAAAGTGAGTTTCCAAATCCAGGAAATGGTGACTAATGAAAATGTTCAGAAGATCCTGGGCAAACGGAGCATGTTTTTCTGTAGATGGAGTGATTACAATGACACCTCGAGAAGCTTTGAAACTGATGAGAAAAGAAGATTCAATTACTAGTGATAACATTTTGATTAAAGAAATTGCTTTGATGTAGTTATTTTGTAATAAAATAAATAATTTATTTTTGAAATTATGTCAATGTAATCGTGGCTCCAACTTTCGTTGTGCTCTTTGGTCCGATACTCATTGCTCTTGCTGATTGAGGGCTCGCTAATCCGAACAACCGACGAATTGCATGTCGGTATTCCGTACTGAAATCAAACTTAAGAGAATGAAAAAAGAGAGTCAATTACTTTATCGCATAAAACACAAAGAAATTGCTTGCACATGCCATATTTACACCGATTCCAGCGTAAATAGCAATGAGCTTTCGGGTTGTAGCATCTTTGGCGACAAATATGGCGAATTGATTAGCAATTGTAACACTACTCCATCCGATTATAACAAGAACAACTGTCCAAAGAATAGAACGAAAAACCACTTTCATTTGGGTGGCTCCTGCATAGCTTCGAAGTTGCAGAAATGTAAAAAAATAGACGATAACTATTGCAACGTTAACAAAGATTCCACTGGTGTTGAATTGGGAAAATGTGGATCCAGCGAAAGCAAGAGGGACGGTACAGTAAATTTTTCTGAAAATGGAAGATTGGTACTTGAATTTGGAAGGATTAGAGTACGATATGGGATCTCTTTGAATGAAACCGGAAACCATGAGAAAAGACGTGTACGTTGCTGGG</canonical>
            <polymorphic>CTTTTAGTAGACAATCCGGATTACACGAAGAAATACTCAACTAGCAATTACTATGGTGCAGCAAAACAGAAACGGTCTTATAACGTTTTGATAACAGACTCCAGAAGAGCATCGATGCCAGTATGCGTTCAACAAATTGCCATTTCTAACTCTACAGCTCCAATTCTAAAAAAGTGAGTTTCCAAATCCAGGAAATGGTGACTAATGAAAATGTTCAGAAGATCCTGGGCAAACGGAGCATGTTTTTCTGTAGATGGAGTGATTACAATGACACCTCGAGAAGCTTTGAAACTGATGAGAAAAGAAGATTCAATTACTAGTGATAACATTTTGATTAAAGAAATTGCTTTGATGTAGTTATTTTGTAATAAAATAAATAATTTATTTTTGAAATTATGTCAATGTAATCGTGGCTCCAACTTTCGTTGTGCTCTTTGGTCCGATACTCATTGCTCTTGCTGATTGAGGGCTCGCTAATCCGAACAACCGACGAATTGCAWGTCGGTATTCCGTACTGAAATCAAACTTAAGAGAATGAAAAAAGAGAGTCAATTACTTTATCGCATAAAACACAAAGAAATTGCTTGCACATGCCATATTTACACCGATTCCAGCGTAAATAGCAATGAGCTTTCGGGTTGTAGCATCTTTGGCGACAAATATGGCGAATTGATTAGCAATTGTAACACTACTCCATCCGATTATAACAAGAACAACTGTCCAAAGAATAGAACGAAAAACCACTTTCATTTGGGTGGCTCCTGCATAGCTTCGAAGTTGCAGAAATGTAAAAAAATAGACGATAACTATTGCAACGTTAACAAAGATTCCACTGGTGTTGAATTGGGAAAATGTGGATCCAGCGAAAGCAAGAGGGACGGTACAGTAAATTTTTCTGAAAATGGAAGATTGGTACTTGAATTTGGAAGGATTAGAGTACGATATGGGATCTCTTTGAATGAAACCGGAAACCATGAGAAAAGACGTGTACGTTGCTGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>407 259 242 92</canonical_bands>
                <polymorphic_bands>407 351 242</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>383 259 239 92 27</canonical_bands>
                <polymorphic_bands>383 351 239 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTTTGGTCCGATACTCATT</pcr_primer_p1>
		<pcr_primer_p2>CTAATCAATTCGCCATATTTGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTCTTTGGTCCGATACTCATTGCTCTTGCTGATTGAGGGCTCGCTAATCCGAACAACCGACGAATTGCATGTCGGTATTCCGTACTGAAATCAAACTTAAGAGAATGAAAAAAGAGAGTCAATTACTTTATCGCATAAAACACAAAGAAATTGCTTGCACATGCCATATTTACACCGATTCCAGCGTAAATAGCAATGAGCTTTCGGGTTGTAGCATCTTTGGCGACAAATATGGCGAATTGATTAG</canonical_amplicon>
		<polymorphic_amplicon>CTCTTTGGTCCGATACTCATTGCTCTTGCTGATTGAGGGCTCGCTAATCCGAACAACCGACGAATTGCAWGTCGGTATTCCGTACTGAAATCAAACTTAAGAGAATGAAAAAAGAGAGTCAATTACTTTATCGCATAAAACACAAAGAAATTGCTTGCACATGCCATATTTACACCGATTCCAGCGTAAATAGCAATGAGCTTTCGGGTTGTAGCATCTTTGGCGACAAATATGGCGAATTGATTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9733</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>312460</contig_pos>
        <strand>+</strand>
        <context>AAAAAGAGAG[C/T]CAATTACTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGTCGGTATTCCGTACTGAAATCAAACTTAAGAGAATGAAAAAAGAGAG</left_flank>
        <right_flank>CAATTACTTTATCGCATAAAACACAAAGAAATTGCTTGCACATGCCATAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTATGGTGCAGCAAAACAGAAACGGTCTTATAACGTTTTGATAACAGACTCCAGAAGAGCATCGATGCCAGTATGCGTTCAACAAATTGCCATTTCTAACTCTACAGCTCCAATTCTAAAAAAGTGAGTTTCCAAATCCAGGAAATGGTGACTAATGAAAATGTTCAGAAGATCCTGGGCAAACGGAGCATGTTTTTCTGTAGATGGAGTGATTACAATGACACCTCGAGAAGCTTTGAAACTGATGAGAAAAGAAGATTCAATTACTAGTGATAACATTTTGATTAAAGAAATTGCTTTGATGTAGTTATTTTGTAATAAAATAAATAATTTATTTTTGAAATTATGTCAATGTAATCGTGGCTCCAACTTTCGTTGTGCTCTTTGGTCCGATACTCATTGCTCTTGCTGATTGAGGGCTCGCTAATCCGAACAACCGACGAATTGCATGTCGGTATTCCGTACTGAAATCAAACTTAAGAGAATGAAAAAAGAGAGTCAATTACTTTATCGCATAAAACACAAAGAAATTGCTTGCACATGCCATATTTACACCGATTCCAGCGTAAATAGCAATGAGCTTTCGGGTTGTAGCATCTTTGGCGACAAATATGGCGAATTGATTAGCAATTGTAACACTACTCCATCCGATTATAACAAGAACAACTGTCCAAAGAATAGAACGAAAAACCACTTTCATTTGGGTGGCTCCTGCATAGCTTCGAAGTTGCAGAAATGTAAAAAAATAGACGATAACTATTGCAACGTTAACAAAGATTCCACTGGTGTTGAATTGGGAAAATGTGGATCCAGCGAAAGCAAGAGGGACGGTACAGTAAATTTTTCTGAAAATGGAAGATTGGTACTTGAATTTGGAAGGATTAGAGTACGATATGGGATCTCTTTGAATGAAACCGGAAACCATGAGAAAAGACGTGTACGTTGCTGGGAGCACCAGTTGGGCGCATATGTAGAGAGCTGGACGTTCTAGTAGCGCAC</canonical>
            <polymorphic>ACTATGGTGCAGCAAAACAGAAACGGTCTTATAACGTTTTGATAACAGACTCCAGAAGAGCATCGATGCCAGTATGCGTTCAACAAATTGCCATTTCTAACTCTACAGCTCCAATTCTAAAAAAGTGAGTTTCCAAATCCAGGAAATGGTGACTAATGAAAATGTTCAGAAGATCCTGGGCAAACGGAGCATGTTTTTCTGTAGATGGAGTGATTACAATGACACCTCGAGAAGCTTTGAAACTGATGAGAAAAGAAGATTCAATTACTAGTGATAACATTTTGATTAAAGAAATTGCTTTGATGTAGTTATTTTGTAATAAAATAAATAATTTATTTTTGAAATTATGTCAATGTAATCGTGGCTCCAACTTTCGTTGTGCTCTTTGGTCCGATACTCATTGCTCTTGCTGATTGAGGGCTCGCTAATCCGAACAACCGACGAATTGCATGTCGGTATTCCGTACTGAAATCAAACTTAAGAGAATGAAAAAAGAGAGYCAATTACTTTATCGCATAAAACACAAAGAAATTGCTTGCACATGCCATATTTACACCGATTCCAGCGTAAATAGCAATGAGCTTTCGGGTTGTAGCATCTTTGGCGACAAATATGGCGAATTGATTAGCAATTGTAACACTACTCCATCCGATTATAACAAGAACAACTGTCCAAAGAATAGAACGAAAAACCACTTTCATTTGGGTGGCTCCTGCATAGCTTCGAAGTTGCAGAAATGTAAAAAAATAGACGATAACTATTGCAACGTTAACAAAGATTCCACTGGTGTTGAATTGGGAAAATGTGGATCCAGCGAAAGCAAGAGGGACGGTACAGTAAATTTTTCTGAAAATGGAAGATTGGTACTTGAATTTGGAAGGATTAGAGTACGATATGGGATCTCTTTGAATGAAACCGGAAACCATGAGAAAAGACGTGTACGTTGCTGGGAGCACCAGTTGGGCGCATATGTAGAGAGCTGGACGTTCTAGTAGCGCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>239 223 219 210 61 48</canonical_bands>
                <polymorphic_bands>300 223 219 210 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTTTGGTCCGATACTCATT</pcr_primer_p1>
		<pcr_primer_p2>CTAATCAATTCGCCATATTTGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTCTTTGGTCCGATACTCATTGCTCTTGCTGATTGAGGGCTCGCTAATCCGAACAACCGACGAATTGCATGTCGGTATTCCGTACTGAAATCAAACTTAAGAGAATGAAAAAAGAGAGTCAATTACTTTATCGCATAAAACACAAAGAAATTGCTTGCACATGCCATATTTACACCGATTCCAGCGTAAATAGCAATGAGCTTTCGGGTTGTAGCATCTTTGGCGACAAATATGGCGAATTGATTAG</canonical_amplicon>
		<polymorphic_amplicon>CTCTTTGGTCCGATACTCATTGCTCTTGCTGATTGAGGGCTCGCTAATCCGAACAACCGACGAATTGCATGTCGGTATTCCGTACTGAAATCAAACTTAAGAGAATGAAAAAAGAGAGYCAATTACTTTATCGCATAAAACACAAAGAAATTGCTTGCACATGCCATATTTACACCGATTCCAGCGTAAATAGCAATGAGCTTTCGGGTTGTAGCATCTTTGGCGACAAATATGGCGAATTGATTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9734</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>312563</contig_pos>
        <strand>+</strand>
        <context>TAGCATCTTT[A/G]GCGACAAATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACACCGATTCCAGCGTAAATAGCAATGAGCTTTCGGGTTGTAGCATCTTT</left_flank>
        <right_flank>GCGACAAATATGGCGAATTGATTAGCAATTGTAACACTACTCCATCCGAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACAGCTCCAATTCTAAAAAAGTGAGTTTCCAAATCCAGGAAATGGTGACTAATGAAAATGTTCAGAAGATCCTGGGCAAACGGAGCATGTTTTTCTGTAGATGGAGTGATTACAATGACACCTCGAGAAGCTTTGAAACTGATGAGAAAAGAAGATTCAATTACTAGTGATAACATTTTGATTAAAGAAATTGCTTTGATGTAGTTATTTTGTAATAAAATAAATAATTTATTTTTGAAATTATGTCAATGTAATCGTGGCTCCAACTTTCGTTGTGCTCTTTGGTCCGATACTCATTGCTCTTGCTGATTGAGGGCTCGCTAATCCGAACAACCGACGAATTGCATGTCGGTATTCCGTACTGAAATCAAACTTAAGAGAATGAAAAAAGAGAGTCAATTACTTTATCGCATAAAACACAAAGAAATTGCTTGCACATGCCATATTTACACCGATTCCAGCGTAAATAGCAATGAGCTTTCGGGTTGTAGCATCTTTGGCGACAAATATGGCGAATTGATTAGCAATTGTAACACTACTCCATCCGATTATAACAAGAACAACTGTCCAAAGAATAGAACGAAAAACCACTTTCATTTGGGTGGCTCCTGCATAGCTTCGAAGTTGCAGAAATGTAAAAAAATAGACGATAACTATTGCAACGTTAACAAAGATTCCACTGGTGTTGAATTGGGAAAATGTGGATCCAGCGAAAGCAAGAGGGACGGTACAGTAAATTTTTCTGAAAATGGAAGATTGGTACTTGAATTTGGAAGGATTAGAGTACGATATGGGATCTCTTTGAATGAAACCGGAAACCATGAGAAAAGACGTGTACGTTGCTGGGAGCACCAGTTGGGCGCATATGTAGAGAGCTGGACGTTCTAGTAGCGCACGATATCTGGAAATTGTCTTTTGGGTTTTGCTTTCTTGTTCCTAAAATCTGCTATTTTTGACTCTCTAATTTCCAAAACTGCCACTTACACAACGGGTGACTTG</canonical>
            <polymorphic>TACAGCTCCAATTCTAAAAAAGTGAGTTTCCAAATCCAGGAAATGGTGACTAATGAAAATGTTCAGAAGATCCTGGGCAAACGGAGCATGTTTTTCTGTAGATGGAGTGATTACAATGACACCTCGAGAAGCTTTGAAACTGATGAGAAAAGAAGATTCAATTACTAGTGATAACATTTTGATTAAAGAAATTGCTTTGATGTAGTTATTTTGTAATAAAATAAATAATTTATTTTTGAAATTATGTCAATGTAATCGTGGCTCCAACTTTCGTTGTGCTCTTTGGTCCGATACTCATTGCTCTTGCTGATTGAGGGCTCGCTAATCCGAACAACCGACGAATTGCATGTCGGTATTCCGTACTGAAATCAAACTTAAGAGAATGAAAAAAGAGAGTCAATTACTTTATCGCATAAAACACAAAGAAATTGCTTGCACATGCCATATTTACACCGATTCCAGCGTAAATAGCAATGAGCTTTCGGGTTGTAGCATCTTTRGCGACAAATATGGCGAATTGATTAGCAATTGTAACACTACTCCATCCGATTATAACAAGAACAACTGTCCAAAGAATAGAACGAAAAACCACTTTCATTTGGGTGGCTCCTGCATAGCTTCGAAGTTGCAGAAATGTAAAAAAATAGACGATAACTATTGCAACGTTAACAAAGATTCCACTGGTGTTGAATTGGGAAAATGTGGATCCAGCGAAAGCAAGAGGGACGGTACAGTAAATTTTTCTGAAAATGGAAGATTGGTACTTGAATTTGGAAGGATTAGAGTACGATATGGGATCTCTTTGAATGAAACCGGAAACCATGAGAAAAGACGTGTACGTTGCTGGGAGCACCAGTTGGGCGCATATGTAGAGAGCTGGACGTTCTAGTAGCGCACGATATCTGGAAATTGTCTTTTGGGTTTTGCTTTCTTGTTCCTAAAATCTGCTATTTTTGACTCTCTAATTTCCAAAACTGCCACTTACACAACGGGTGACTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTCCGTACTGAAATCAAACTT</pcr_primer_p1>
		<pcr_primer_p2>AAAGTGGTTTTTCGTTCTATTCT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TATTCCGTACTGAAATCAAACTTAAGAGAATGAAAAAAGAGAGTCAATTACTTTATCGCATAAAACACAAAGAAATTGCTTGCACATGCCATATTTACACCGATTCCAGCGTAAATAGCAATGAGCTTTCGGGTTGTAGCATCTTTGGCGACAAATATGGCGAATTGATTAGCAATTGTAACACTACTCCATCCGATTATAACAAGAACAACTGTCCAAAGAATAGAACGAAAAACCACTTT</canonical_amplicon>
		<polymorphic_amplicon>TATTCCGTACTGAAATCAAACTTAAGAGAATGAAAAAAGAGAGTCAATTACTTTATCGCATAAAACACAAAGAAATTGCTTGCACATGCCATATTTACACCGATTCCAGCGTAAATAGCAATGAGCTTTCGGGTTGTAGCATCTTTRGCGACAAATATGGCGAATTGATTAGCAATTGTAACACTACTCCATCCGATTATAACAAGAACAACTGTCCAAAGAATAGAACGAAAAACCACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9735</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>312800</contig_pos>
        <strand>+</strand>
        <context>CGGTACAGTA[A/T]ATTTTTCTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGAATTGGGAAAATGTGGATCCAGCGAAAGCAAGAGGGACGGTACAGTA</left_flank>
        <right_flank>ATTTTTCTGAAAATGGAAGATTGGTACTTGAATTTGGAAGGATTAGAGTA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAATTATGTCAATGTAATCGTGGCTCCAACTTTCGTTGTGCTCTTTGGTCCGATACTCATTGCTCTTGCTGATTGAGGGCTCGCTAATCCGAACAACCGACGAATTGCATGTCGGTATTCCGTACTGAAATCAAACTTAAGAGAATGAAAAAAGAGAGTCAATTACTTTATCGCATAAAACACAAAGAAATTGCTTGCACATGCCATATTTACACCGATTCCAGCGTAAATAGCAATGAGCTTTCGGGTTGTAGCATCTTTGGCGACAAATATGGCGAATTGATTAGCAATTGTAACACTACTCCATCCGATTATAACAAGAACAACTGTCCAAAGAATAGAACGAAAAACCACTTTCATTTGGGTGGCTCCTGCATAGCTTCGAAGTTGCAGAAATGTAAAAAAATAGACGATAACTATTGCAACGTTAACAAAGATTCCACTGGTGTTGAATTGGGAAAATGTGGATCCAGCGAAAGCAAGAGGGACGGTACAGTAAATTTTTCTGAAAATGGAAGATTGGTACTTGAATTTGGAAGGATTAGAGTACGATATGGGATCTCTTTGAATGAAACCGGAAACCATGAGAAAAGACGTGTACGTTGCTGGGAGCACCAGTTGGGCGCATATGTAGAGAGCTGGACGTTCTAGTAGCGCACGATATCTGGAAATTGTCTTTTGGGTTTTGCTTTCTTGTTCCTAAAATCTGCTATTTTTGACTCTCTAATTTCCAAAACTGCCACTTACACAACGGGTGACTTGCAAGCAATAAACCTGTCTATACCAGTCATAAGTCTCAACGGATTGGCCATACACTTCCCGATACTCGTGAAAAATAACATCCAATAGCAATTAGCTTGTGTATCCGTTACTGAAAATATTCTGAGAATAAGAGCGAATCAAATTTCCGAAGGGAGTTGTACCGTCTGCAAAGATGTGGTAATTAAAAACAAAGTGTCCGCAGAGATGTAGCATGTCAGCTAAGCAGCCAAATGTGAT</canonical>
            <polymorphic>GAAATTATGTCAATGTAATCGTGGCTCCAACTTTCGTTGTGCTCTTTGGTCCGATACTCATTGCTCTTGCTGATTGAGGGCTCGCTAATCCGAACAACCGACGAATTGCATGTCGGTATTCCGTACTGAAATCAAACTTAAGAGAATGAAAAAAGAGAGTCAATTACTTTATCGCATAAAACACAAAGAAATTGCTTGCACATGCCATATTTACACCGATTCCAGCGTAAATAGCAATGAGCTTTCGGGTTGTAGCATCTTTGGCGACAAATATGGCGAATTGATTAGCAATTGTAACACTACTCCATCCGATTATAACAAGAACAACTGTCCAAAGAATAGAACGAAAAACCACTTTCATTTGGGTGGCTCCTGCATAGCTTCGAAGTTGCAGAAATGTAAAAAAATAGACGATAACTATTGCAACGTTAACAAAGATTCCACTGGTGTTGAATTGGGAAAATGTGGATCCAGCGAAAGCAAGAGGGACGGTACAGTAWATTTTTCTGAAAATGGAAGATTGGTACTTGAATTTGGAAGGATTAGAGTACGATATGGGATCTCTTTGAATGAAACCGGAAACCATGAGAAAAGACGTGTACGTTGCTGGGAGCACCAGTTGGGCGCATATGTAGAGAGCTGGACGTTCTAGTAGCGCACGATATCTGGAAATTGTCTTTTGGGTTTTGCTTTCTTGTTCCTAAAATCTGCTATTTTTGACTCTCTAATTTCCAAAACTGCCACTTACACAACGGGTGACTTGCAAGCAATAAACCTGTCTATACCAGTCATAAGTCTCAACGGATTGGCCATACACTTCCCGATACTCGTGAAAAATAACATCCAATAGCAATTAGCTTGTGTATCCGTTACTGAAAATATTCTGAGAATAAGAGCGAATCAAATTTCCGAAGGGAGTTGTACCGTCTGCAAAGATGTGGTAATTAAAAACAAAGTGTCCGCAGAGATGTAGCATGTCAGCTAAGCAGCCAAATGTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>499 373 97 31</canonical_bands>
                <polymorphic_bands>530 373 97</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>163 140 125 101 89 58 58 56 52 47 39 31 28 11 2</canonical_bands>
                <polymorphic_bands>163 140 125 101 89 78 58 58 56 52 39 28 11 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATCCGATTATAACAAGAACAAC</pcr_primer_p1>
		<pcr_primer_p2>ATCGTACTCTAATCCTTCCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATCCGATTATAACAAGAACAACTGTCCAAAGAATAGAACGAAAAACCACTTTCATTTGGGTGGCTCCTGCATAGCTTCGAAGTTGCAGAAATGTAAAAAAATAGACGATAACTATTGCAACGTTAACAAAGATTCCACTGGTGTTGAATTGGGAAAATGTGGATCCAGCGAAAGCAAGAGGGACGGTACAGTAAATTTTTCTGAAAATGGAAGATTGGTACTTGAATTTGGAAGGATTAGAGTACGAT</canonical_amplicon>
		<polymorphic_amplicon>CATCCGATTATAACAAGAACAACTGTCCAAAGAATAGAACGAAAAACCACTTTCATTTGGGTGGCTCCTGCATAGCTTCGAAGTTGCAGAAATGTAAAAAAATAGACGATAACTATTGCAACGTTAACAAAGATTCCACTGGTGTTGAATTGGGAAAATGTGGATCCAGCGAAAGCAAGAGGGACGGTACAGTAWATTTTTCTGAAAATGGAAGATTGGTACTTGAATTTGGAAGGATTAGAGTACGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9736</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>312829</contig_pos>
        <strand>+</strand>
        <context>GATTGGTACT[G/T]GAATTTGGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGCAAGAGGGACGGTACAGTAAATTTTTCTGAAAATGGAAGATTGGTACT</left_flank>
        <right_flank>GAATTTGGAAGGATTAGAGTACGATATGGGATCTCTTTGAATGAAACCGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTCGTTGTGCTCTTTGGTCCGATACTCATTGCTCTTGCTGATTGAGGGCTCGCTAATCCGAACAACCGACGAATTGCATGTCGGTATTCCGTACTGAAATCAAACTTAAGAGAATGAAAAAAGAGAGTCAATTACTTTATCGCATAAAACACAAAGAAATTGCTTGCACATGCCATATTTACACCGATTCCAGCGTAAATAGCAATGAGCTTTCGGGTTGTAGCATCTTTGGCGACAAATATGGCGAATTGATTAGCAATTGTAACACTACTCCATCCGATTATAACAAGAACAACTGTCCAAAGAATAGAACGAAAAACCACTTTCATTTGGGTGGCTCCTGCATAGCTTCGAAGTTGCAGAAATGTAAAAAAATAGACGATAACTATTGCAACGTTAACAAAGATTCCACTGGTGTTGAATTGGGAAAATGTGGATCCAGCGAAAGCAAGAGGGACGGTACAGTAAATTTTTCTGAAAATGGAAGATTGGTACTTGAATTTGGAAGGATTAGAGTACGATATGGGATCTCTTTGAATGAAACCGGAAACCATGAGAAAAGACGTGTACGTTGCTGGGAGCACCAGTTGGGCGCATATGTAGAGAGCTGGACGTTCTAGTAGCGCACGATATCTGGAAATTGTCTTTTGGGTTTTGCTTTCTTGTTCCTAAAATCTGCTATTTTTGACTCTCTAATTTCCAAAACTGCCACTTACACAACGGGTGACTTGCAAGCAATAAACCTGTCTATACCAGTCATAAGTCTCAACGGATTGGCCATACACTTCCCGATACTCGTGAAAAATAACATCCAATAGCAATTAGCTTGTGTATCCGTTACTGAAAATATTCTGAGAATAAGAGCGAATCAAATTTCCGAAGGGAGTTGTACCGTCTGCAAAGATGTGGTAATTAAAAACAAAGTGTCCGCAGAGATGTAGCATGTCAGCTAAGCAGCCAAATGTGATCATGTAATGACATGGGGAATGGAAGTTTC</canonical>
            <polymorphic>ACTTTCGTTGTGCTCTTTGGTCCGATACTCATTGCTCTTGCTGATTGAGGGCTCGCTAATCCGAACAACCGACGAATTGCATGTCGGTATTCCGTACTGAAATCAAACTTAAGAGAATGAAAAAAGAGAGTCAATTACTTTATCGCATAAAACACAAAGAAATTGCTTGCACATGCCATATTTACACCGATTCCAGCGTAAATAGCAATGAGCTTTCGGGTTGTAGCATCTTTGGCGACAAATATGGCGAATTGATTAGCAATTGTAACACTACTCCATCCGATTATAACAAGAACAACTGTCCAAAGAATAGAACGAAAAACCACTTTCATTTGGGTGGCTCCTGCATAGCTTCGAAGTTGCAGAAATGTAAAAAAATAGACGATAACTATTGCAACGTTAACAAAGATTCCACTGGTGTTGAATTGGGAAAATGTGGATCCAGCGAAAGCAAGAGGGACGGTACAGTAAATTTTTCTGAAAATGGAAGATTGGTACTKGAATTTGGAAGGATTAGAGTACGATATGGGATCTCTTTGAATGAAACCGGAAACCATGAGAAAAGACGTGTACGTTGCTGGGAGCACCAGTTGGGCGCATATGTAGAGAGCTGGACGTTCTAGTAGCGCACGATATCTGGAAATTGTCTTTTGGGTTTTGCTTTCTTGTTCCTAAAATCTGCTATTTTTGACTCTCTAATTTCCAAAACTGCCACTTACACAACGGGTGACTTGCAAGCAATAAACCTGTCTATACCAGTCATAAGTCTCAACGGATTGGCCATACACTTCCCGATACTCGTGAAAAATAACATCCAATAGCAATTAGCTTGTGTATCCGTTACTGAAAATATTCTGAGAATAAGAGCGAATCAAATTTCCGAAGGGAGTTGTACCGTCTGCAAAGATGTGGTAATTAAAAACAAAGTGTCCGCAGAGATGTAGCATGTCAGCTAAGCAGCCAAATGTGATCATGTAATGACATGGGGAATGGAAGTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTGCAACGTTAACAAAGATT</pcr_primer_p1>
		<pcr_primer_p2>CTACTAGAACGTCCAGCTCTCTA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>CTATTGCAACGTTAACAAAGATTCCACTGGTGTTGAATTGGGAAAATGTGGATCCAGCGAAAGCAAGAGGGACGGTACAGTAAATTTTTCTGAAAATGGAAGATTGGTACTTGAATTTGGAAGGATTAGAGTACGATATGGGATCTCTTTGAATGAAACCGGAAACCATGAGAAAAGACGTGTACGTTGCTGGGAGCACCAGTTGGGCGCATATGTAGAGAGCTGGACGTTCTAGTAG</canonical_amplicon>
		<polymorphic_amplicon>CTATTGCAACGTTAACAAAGATTCCACTGGTGTTGAATTGGGAAAATGTGGATCCAGCGAAAGCAAGAGGGACGGTACAGTAAATTTTTCTGAAAATGGAAGATTGGTACTKGAATTTGGAAGGATTAGAGTACGATATGGGATCTCTTTGAATGAAACCGGAAACCATGAGAAAAGACGTGTACGTTGCTGGGAGCACCAGTTGGGCGCATATGTAGAGAGCTGGACGTTCTAGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9737</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>314423</contig_pos>
        <strand>+</strand>
        <context>GAGCAGTCCA[A/G]GAATCTGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTTCATAACTGAATGTTCTGTATCCTTCGAGCGCTTCCGAGCAGTCCA</left_flank>
        <right_flank>GAATCTGAAATTTTATGTGATAAGAAGGATTTATAGCAACACGAAATTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTAGAAGGTTTAGATCGAGGCACAATAAACGGCGACGGAATCTCATGGCAATGTAGATCGGAACGATGGTTGTGGAGAAGGAAAATTTTCGAATAAAGGATACTTGAGAGCTGAGAACAAGGGAAAGAAAATACACTATAATAATAAGAAGCATATGAAACGTCTACAAAAGATACCTGAACATCATCTTTCAAACAAAAAGAATGGTTCAGGTGAATTATCCCGTATTTCGGCACGCGGATGATATCGTTTTAGAATATTATCAGTGCTGCTCAAATAGAATCAAACATGAATTATATTTTCGAAAAGGTTAAACTTTAACAACGGCGGTTGGAGTCTTGTTGACTACGGTGGTTGGAGCCTCCATATCCGCTTCTAACTTTAACATTTTCTCGTTGATTGTATTTTTTGACACTGGAGTTACGAGTCGGGTATCATGGTCTGGTCCCATTTCATAACTGAATGTTCTGTATCCTTCGAGCGCTTCCGAGCAGTCCAGGAATCTGAAATTTTATGTGATAAGAAGGATTTATAGCAACACGAAATTAAAGCTCAACGAAATCGAAAATCCTGATAACCTAGAAACATTTTGCAACTAATTTTACGTCACCGTACCTGATGTTATGTTTAGGTGGGATATAAAAGATGTCTCCTCTCTTGACCTCATACTTTCCGATCAGCTGATTTTCTTGTGTCGCCTCCTCGATCGTTCCTTTTCCACTGACCACAACGAGAATTGAAGCACAGTCCAAAGTAGGCATCAACATCTCTTTTGACGTATGATCCGTTCCCACTCGTATTCTGTGCAATTGGAAATCTTTACAGTCTGGTGCATACATATCAACACATGGTGTCAGTTTCATTTCCGGCACCAAATAATCCTTTTGTTCAGTCATTTTATAGTTGAGTACGGAGCAAAGGGCATCTCTATCGATATATTTTGGAGTCATTGCCGCGCGAATCGTATTGTTAGAGCATCCAACACATTCAACACATTCT</canonical>
            <polymorphic>ACTAGAAGGTTTAGATCGAGGCACAATAAACGGCGACGGAATCTCATGGCAATGTAGATCGGAACGATGGTTGTGGAGAAGGAAAATTTTCGAATAAAGGATACTTGAGAGCTGAGAACAAGGGAAAGAAAATACACTATAATAATAAGAAGCATATGAAACGTCTACAAAAGATACCTGAACATCATCTTTCAAACAAAAAGAATGGTTCAGGTGAATTATCCCGTATTTCGGCACGCGGATGATATCGTTTTAGAATATTATCAGTGCTGCTCAAATAGAATCAAACATGAATTATATTTTCGAAAAGGTTAAACTTTAACAACGGCGGTTGGAGTCTTGTTGACTACGGTGGTTGGAGCCTCCATATCCGCTTCTAACTTTAACATTTTCTCGTTGATTGTATTTTTTGACACTGGAGTTACGAGTCGGGTATCATGGTCTGGTCCCATTTCATAACTGAATGTTCTGTATCCTTCGAGCGCTTCCGAGCAGTCCARGAATCTGAAATTTTATGTGATAAGAAGGATTTATAGCAACACGAAATTAAAGCTCAACGAAATCGAAAATCCTGATAACCTAGAAACATTTTGCAACTAATTTTACGTCACCGTACCTGATGTTATGTTTAGGTGGGATATAAAAGATGTCTCCTCTCTTGACCTCATACTTTCCGATCAGCTGATTTTCTTGTGTCGCCTCCTCGATCGTTCCTTTTCCACTGACCACAACGAGAATTGAAGCACAGTCCAAAGTAGGCATCAACATCTCTTTTGACGTATGATCCGTTCCCACTCGTATTCTGTGCAATTGGAAATCTTTACAGTCTGGTGCATACATATCAACACATGGTGTCAGTTTCATTTCCGGCACCAAATAATCCTTTTGTTCAGTCATTTTATAGTTGAGTACGGAGCAAAGGGCATCTCTATCGATATATTTTGGAGTCATTGCCGCGCGAATCGTATTGTTAGAGCATCCAACACATTCAACACATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTTTCTCGTTGATTGTATTTT</pcr_primer_p1>
		<pcr_primer_p2>ACCTAAACATAACATCAGGTACG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CATTTTCTCGTTGATTGTATTTTTTGACACTGGAGTTACGAGTCGGGTATCATGGTCTGGTCCCATTTCATAACTGAATGTTCTGTATCCTTCGAGCGCTTCCGAGCAGTCCAGGAATCTGAAATTTTATGTGATAAGAAGGATTTATAGCAACACGAAATTAAAGCTCAACGAAATCGAAAATCCTGATAACCTAGAAACATTTTGCAACTAATTTTACGTCACCGTACCTGATGTTATGTTTAGGT</canonical_amplicon>
		<polymorphic_amplicon>CATTTTCTCGTTGATTGTATTTTTTGACACTGGAGTTACGAGTCGGGTATCATGGTCTGGTCCCATTTCATAACTGAATGTTCTGTATCCTTCGAGCGCTTCCGAGCAGTCCARGAATCTGAAATTTTATGTGATAAGAAGGATTTATAGCAACACGAAATTAAAGCTCAACGAAATCGAAAATCCTGATAACCTAGAAACATTTTGCAACTAATTTTACGTCACCGTACCTGATGTTATGTTTAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9738</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>314241</contig_pos>
        <strand>+</strand>
        <context>AAGGTTAAAC[C/T]TTAACAACGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCTGCTCAAATAGAATCAAACATGAATTATATTTTCGAAAAGGTTAAAC</left_flank>
        <right_flank>TTAACAACGGCGGTTGGAGTCTTGTTGACTACGGTGGTTGGAGCCTCCAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTCACAATCAAATAAAAGTGTAATAAGTTGACAGGTTAAGCATATGAAACGGAGAAAAATTGCAGGAATGTGTAAAAAGAAAATTGAAAACAAGGGAAGGAAAGAGAGACTGGGGTGGAAATGATTGGAAGCGATTTGACTGAAAATGGACAGTGTTAGCGAGGGCAAAAAGAAGAAAAAACTAGAAGGTTTAGATCGAGGCACAATAAACGGCGACGGAATCTCATGGCAATGTAGATCGGAACGATGGTTGTGGAGAAGGAAAATTTTCGAATAAAGGATACTTGAGAGCTGAGAACAAGGGAAAGAAAATACACTATAATAATAAGAAGCATATGAAACGTCTACAAAAGATACCTGAACATCATCTTTCAAACAAAAAGAATGGTTCAGGTGAATTATCCCGTATTTCGGCACGCGGATGATATCGTTTTAGAATATTATCAGTGCTGCTCAAATAGAATCAAACATGAATTATATTTTCGAAAAGGTTAAACTTTAACAACGGCGGTTGGAGTCTTGTTGACTACGGTGGTTGGAGCCTCCATATCCGCTTCTAACTTTAACATTTTCTCGTTGATTGTATTTTTTGACACTGGAGTTACGAGTCGGGTATCATGGTCTGGTCCCATTTCATAACTGAATGTTCTGTATCCTTCGAGCGCTTCCGAGCAGTCCAGGAATCTGAAATTTTATGTGATAAGAAGGATTTATAGCAACACGAAATTAAAGCTCAACGAAATCGAAAATCCTGATAACCTAGAAACATTTTGCAACTAATTTTACGTCACCGTACCTGATGTTATGTTTAGGTGGGATATAAAAGATGTCTCCTCTCTTGACCTCATACTTTCCGATCAGCTGATTTTCTTGTGTCGCCTCCTCGATCGTTCCTTTTCCACTGACCACAACGAGAATTGAAGCACAGTCCAAAGTAGGCATCAACATCTCTTTTGACGTATGATCCGTTCCCACTCGTATTCTGTGCAATTGGAAAT</canonical>
            <polymorphic>TGTTCACAATCAAATAAAAGTGTAATAAGTTGACAGGTTAAGCATATGAAACGGAGAAAAATTGCAGGAATGTGTAAAAAGAAAATTGAAAACAAGGGAAGGAAAGAGAGACTGGGGTGGAAATGATTGGAAGCGATTTGACTGAAAATGGACAGTGTTAGCGAGGGCAAAAAGAAGAAAAAACTAGAAGGTTTAGATCGAGGCACAATAAACGGCGACGGAATCTCATGGCAATGTAGATCGGAACGATGGTTGTGGAGAAGGAAAATTTTCGAATAAAGGATACTTGAGAGCTGAGAACAAGGGAAAGAAAATACACTATAATAATAAGAAGCATATGAAACGTCTACAAAAGATACCTGAACATCATCTTTCAAACAAAAAGAATGGTTCAGGTGAATTATCCCGTATTTCGGCACGCGGATGATATCGTTTTAGAATATTATCAGTGCTGCTCAAATAGAATCAAACATGAATTATATTTTCGAAAAGGTTAAACYTTAACAACGGCGGTTGGAGTCTTGTTGACTACGGTGGTTGGAGCCTCCATATCCGCTTCTAACTTTAACATTTTCTCGTTGATTGTATTTTTTGACACTGGAGTTACGAGTCGGGTATCATGGTCTGGTCCCATTTCATAACTGAATGTTCTGTATCCTTCGAGCGCTTCCGAGCAGTCCAGGAATCTGAAATTTTATGTGATAAGAAGGATTTATAGCAACACGAAATTAAAGCTCAACGAAATCGAAAATCCTGATAACCTAGAAACATTTTGCAACTAATTTTACGTCACCGTACCTGATGTTATGTTTAGGTGGGATATAAAAGATGTCTCCTCTCTTGACCTCATACTTTCCGATCAGCTGATTTTCTTGTGTCGCCTCCTCGATCGTTCCTTTTCCACTGACCACAACGAGAATTGAAGCACAGTCCAAAGTAGGCATCAACATCTCTTTTGACGTATGATCCGTTCCCACTCGTATTCTGTGCAATTGGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACGTCTACAAAAGATACCTGAA</pcr_primer_p1>
		<pcr_primer_p2>AAAATACAATCAACGAGAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACGTCTACAAAAGATACCTGAACATCATCTTTCAAACAAAAAGAATGGTTCAGGTGAATTATCCCGTATTTCGGCACGCGGATGATATCGTTTTAGAATATTATCAGTGCTGCTCAAATAGAATCAAACATGAATTATATTTTCGAAAAGGTTAAACTTTAACAACGGCGGTTGGAGTCTTGTTGACTACGGTGGTTGGAGCCTCCATATCCGCTTCTAACTTTAACATTTTCTCGTTGATTGTATTTT</canonical_amplicon>
		<polymorphic_amplicon>AACGTCTACAAAAGATACCTGAACATCATCTTTCAAACAAAAAGAATGGTTCAGGTGAATTATCCCGTATTTCGGCACGCGGATGATATCGTTTTAGAATATTATCAGTGCTGCTCAAATAGAATCAAACATGAATTATATTTTCGAAAAGGTTAAACYTTAACAACGGCGGTTGGAGTCTTGTTGACTACGGTGGTTGGAGCCTCCATATCCGCTTCTAACTTTAACATTTTCTCGTTGATTGTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9739</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>314227</contig_pos>
        <strand>+</strand>
        <context>ATTATATTTT[C/T]GAAAAGGTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGAATATTATCAGTGCTGCTCAAATAGAATCAAACATGAATTATATTTT</left_flank>
        <right_flank>GAAAAGGTTAAACTTTAACAACGGCGGTTGGAGTCTTGTTGACTACGGTG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGAACTTCATTTTGTTCACAATCAAATAAAAGTGTAATAAGTTGACAGGTTAAGCATATGAAACGGAGAAAAATTGCAGGAATGTGTAAAAAGAAAATTGAAAACAAGGGAAGGAAAGAGAGACTGGGGTGGAAATGATTGGAAGCGATTTGACTGAAAATGGACAGTGTTAGCGAGGGCAAAAAGAAGAAAAAACTAGAAGGTTTAGATCGAGGCACAATAAACGGCGACGGAATCTCATGGCAATGTAGATCGGAACGATGGTTGTGGAGAAGGAAAATTTTCGAATAAAGGATACTTGAGAGCTGAGAACAAGGGAAAGAAAATACACTATAATAATAAGAAGCATATGAAACGTCTACAAAAGATACCTGAACATCATCTTTCAAACAAAAAGAATGGTTCAGGTGAATTATCCCGTATTTCGGCACGCGGATGATATCGTTTTAGAATATTATCAGTGCTGCTCAAATAGAATCAAACATGAATTATATTTTCGAAAAGGTTAAACTTTAACAACGGCGGTTGGAGTCTTGTTGACTACGGTGGTTGGAGCCTCCATATCCGCTTCTAACTTTAACATTTTCTCGTTGATTGTATTTTTTGACACTGGAGTTACGAGTCGGGTATCATGGTCTGGTCCCATTTCATAACTGAATGTTCTGTATCCTTCGAGCGCTTCCGAGCAGTCCAGGAATCTGAAATTTTATGTGATAAGAAGGATTTATAGCAACACGAAATTAAAGCTCAACGAAATCGAAAATCCTGATAACCTAGAAACATTTTGCAACTAATTTTACGTCACCGTACCTGATGTTATGTTTAGGTGGGATATAAAAGATGTCTCCTCTCTTGACCTCATACTTTCCGATCAGCTGATTTTCTTGTGTCGCCTCCTCGATCGTTCCTTTTCCACTGACCACAACGAGAATTGAAGCACAGTCCAAAGTAGGCATCAACATCTCTTTTGACGTATGATCCGTTCCCACTCGTATTCT</canonical>
            <polymorphic>AATGAACTTCATTTTGTTCACAATCAAATAAAAGTGTAATAAGTTGACAGGTTAAGCATATGAAACGGAGAAAAATTGCAGGAATGTGTAAAAAGAAAATTGAAAACAAGGGAAGGAAAGAGAGACTGGGGTGGAAATGATTGGAAGCGATTTGACTGAAAATGGACAGTGTTAGCGAGGGCAAAAAGAAGAAAAAACTAGAAGGTTTAGATCGAGGCACAATAAACGGCGACGGAATCTCATGGCAATGTAGATCGGAACGATGGTTGTGGAGAAGGAAAATTTTCGAATAAAGGATACTTGAGAGCTGAGAACAAGGGAAAGAAAATACACTATAATAATAAGAAGCATATGAAACGTCTACAAAAGATACCTGAACATCATCTTTCAAACAAAAAGAATGGTTCAGGTGAATTATCCCGTATTTCGGCACGCGGATGATATCGTTTTAGAATATTATCAGTGCTGCTCAAATAGAATCAAACATGAATTATATTTTYGAAAAGGTTAAACTTTAACAACGGCGGTTGGAGTCTTGTTGACTACGGTGGTTGGAGCCTCCATATCCGCTTCTAACTTTAACATTTTCTCGTTGATTGTATTTTTTGACACTGGAGTTACGAGTCGGGTATCATGGTCTGGTCCCATTTCATAACTGAATGTTCTGTATCCTTCGAGCGCTTCCGAGCAGTCCAGGAATCTGAAATTTTATGTGATAAGAAGGATTTATAGCAACACGAAATTAAAGCTCAACGAAATCGAAAATCCTGATAACCTAGAAACATTTTGCAACTAATTTTACGTCACCGTACCTGATGTTATGTTTAGGTGGGATATAAAAGATGTCTCCTCTCTTGACCTCATACTTTCCGATCAGCTGATTTTCTTGTGTCGCCTCCTCGATCGTTCCTTTTCCACTGACCACAACGAGAATTGAAGCACAGTCCAAAGTAGGCATCAACATCTCTTTTGACGTATGATCCGTTCCCACTCGTATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 286 213</canonical_bands>
                <polymorphic_bands>714 286</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>213 213 175 141 99 85 74</canonical_bands>
                <polymorphic_bands>388 213 141 99 85 74</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACGTCTACAAAAGATACCTGAA</pcr_primer_p1>
		<pcr_primer_p2>AAAATACAATCAACGAGAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACGTCTACAAAAGATACCTGAACATCATCTTTCAAACAAAAAGAATGGTTCAGGTGAATTATCCCGTATTTCGGCACGCGGATGATATCGTTTTAGAATATTATCAGTGCTGCTCAAATAGAATCAAACATGAATTATATTTTCGAAAAGGTTAAACTTTAACAACGGCGGTTGGAGTCTTGTTGACTACGGTGGTTGGAGCCTCCATATCCGCTTCTAACTTTAACATTTTCTCGTTGATTGTATTTT</canonical_amplicon>
		<polymorphic_amplicon>AACGTCTACAAAAGATACCTGAACATCATCTTTCAAACAAAAAGAATGGTTCAGGTGAATTATCCCGTATTTCGGCACGCGGATGATATCGTTTTAGAATATTATCAGTGCTGCTCAAATAGAATCAAACATGAATTATATTTTYGAAAAGGTTAAACTTTAACAACGGCGGTTGGAGTCTTGTTGACTACGGTGGTTGGAGCCTCCATATCCGCTTCTAACTTTAACATTTTCTCGTTGATTGTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9740</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>315958</contig_pos>
        <strand>+</strand>
        <context>TTTAGCGTTC[A/G]AAATTGCGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGCTGAAAACATTGTATTGAAAAGAGTTGATGTTTGTACTTTAGCGTTC</left_flank>
        <right_flank>AAATTGCGAACAATCTTTCAAGGTCGGTTCAAGAAACCAATTCTAAGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGTAACCGGAACGATGGGAATGCTGGAATTAGAAAAAAAAACATAGAAACTACGAAATGTGAACACTTACTTTGAAGATTTTTCAAAATTTCTCTAGCTGGTCTAAATCCACACAAAAGTTCGAATCGGGTCAAAGCATATGCTAGCTCTGGCTTATGGTTTCTGTCTGGATAATTGATTGGGTCCAGTTCATGTAATCTGCGAGCCTGCTCCTAAAAAATTGAAAATATGATGTTTTTAATTTTTTTTTTAAATCGTACTTTGGTTGGATGGACTTGTAGTGAGAGTGTGGTTCGAATCGACATAACTTTCATGATAAATGGCAAATGAATGTTCTTTGCCGAATTGTTGTTCGTCAAAAGGGATGGGTGCTTAGCCAAATACGTCGAAAGTCTCGTTGAGCACTTTTTCAATTGAGCAGGTCCATCCGGGTGGGTTCCCATCCAGAGCTGAAAACATTGTATTGAAAAGAGTTGATGTTTGTACTTTAGCGTTCAAAATTGCGAACAATCTTTCAAGGTCGGTTCAAGAAACCAATTCTAAGAAATCAGGTTCTTGATTCTGCAACAAAGATCAGAAAAGATTAAGATCACAAATAGTTTGCACTTTTAAATTCTTTTTTTGGTTTGCATGATTTTCTGACGCCCTGCTGAGGACGACAAATTGTTATTATGAGGGTAGAAAAATGTTTGTGTTTCCAAAATATGTGATGATGATCAGTTTTTTTTGAAAACCCCGTATGATATTGGAAATTAACTGAAGGCGTATTTTATGGTTTTATAAAGTAATTGTTGTGTGGGAAGGAATGAAAATGTTCATGTAGAGTGGAAAGAGTTAAATTCACAAAAAATGGCCATAGAGCTGAAAATTAGGACCTGGTTTATTTATTACCATCACACAACCTTTGATAAAAGGGTCCATACGTTGCCAAGTTTGAGCTCAAGTATCTCAACTGCTAAGCAAGATATCGAAAATGTGTCAACTGACAAAAACTTTT</canonical>
            <polymorphic>AAAAGTAACCGGAACGATGGGAATGCTGGAATTAGAAAAAAAAACATAGAAACTACGAAATGTGAACACTTACTTTGAAGATTTTTCAAAATTTCTCTAGCTGGTCTAAATCCACACAAAAGTTCGAATCGGGTCAAAGCATATGCTAGCTCTGGCTTATGGTTTCTGTCTGGATAATTGATTGGGTCCAGTTCATGTAATCTGCGAGCCTGCTCCTAAAAAATTGAAAATATGATGTTTTTAATTTTTTTTTTAAATCGTACTTTGGTTGGATGGACTTGTAGTGAGAGTGTGGTTCGAATCGACATAACTTTCATGATAAATGGCAAATGAATGTTCTTTGCCGAATTGTTGTTCGTCAAAAGGGATGGGTGCTTAGCCAAATACGTCGAAAGTCTCGTTGAGCACTTTTTCAATTGAGCAGGTCCATCCGGGTGGGTTCCCATCCAGAGCTGAAAACATTGTATTGAAAAGAGTTGATGTTTGTACTTTAGCGTTCRAAATTGCGAACAATCTTTCAAGGTCGGTTCAAGAAACCAATTCTAAGAAATCAGGTTCTTGATTCTGCAACAAAGATCAGAAAAGATTAAGATCACAAATAGTTTGCACTTTTAAATTCTTTTTTTGGTTTGCATGATTTTCTGACGCCCTGCTGAGGACGACAAATTGTTATTATGAGGGTAGAAAAATGTTTGTGTTTCCAAAATATGTGATGATGATCAGTTTTTTTTGAAAACCCCGTATGATATTGGAAATTAACTGAAGGCGTATTTTATGGTTTTATAAAGTAATTGTTGTGTGGGAAGGAATGAAAATGTTCATGTAGAGTGGAAAGAGTTAAATTCACAAAAAATGGCCATAGAGCTGAAAATTAGGACCTGGTTTATTTATTACCATCACACAACCTTTGATAAAAGGGTCCATACGTTGCCAAGTTTGAGCTCAAGTATCTCAACTGCTAAGCAAGATATCGAAAATGTGTCAACTGACAAAAACTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAATGGCAAATGAATGTTCT</pcr_primer_p1>
		<pcr_primer_p2>AGAATCAAGAACCTGATTTCTTAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATAAATGGCAAATGAATGTTCTTTGCCGAATTGTTGTTCGTCAAAAGGGATGGGTGCTTAGCCAAATACGTCGAAAGTCTCGTTGAGCACTTTTTCAATTGAGCAGGTCCATCCGGGTGGGTTCCCATCCAGAGCTGAAAACATTGTATTGAAAAGAGTTGATGTTTGTACTTTAGCGTTCAAAATTGCGAACAATCTTTCAAGGTCGGTTCAAGAAACCAATTCTAAGAAATCAGGTTCTTGATTCT</canonical_amplicon>
		<polymorphic_amplicon>ATAAATGGCAAATGAATGTTCTTTGCCGAATTGTTGTTCGTCAAAAGGGATGGGTGCTTAGCCAAATACGTCGAAAGTCTCGTTGAGCACTTTTTCAATTGAGCAGGTCCATCCGGGTGGGTTCCCATCCAGAGCTGAAAACATTGTATTGAAAAGAGTTGATGTTTGTACTTTAGCGTTCRAAATTGCGAACAATCTTTCAAGGTCGGTTCAAGAAACCAATTCTAAGAAATCAGGTTCTTGATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9741</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>316094</contig_pos>
        <strand>+</strand>
        <context>TGGTTTGCAT[G/T]ATTTTCTGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTAAGATCACAAATAGTTTGCACTTTTAAATTCTTTTTTTGGTTTGCAT</left_flank>
        <right_flank>ATTTTCTGACGCCCTGCTGAGGACGACAAATTGTTATTATGAGGGTAGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCATATGCTAGCTCTGGCTTATGGTTTCTGTCTGGATAATTGATTGGGTCCAGTTCATGTAATCTGCGAGCCTGCTCCTAAAAAATTGAAAATATGATGTTTTTAATTTTTTTTTTAAATCGTACTTTGGTTGGATGGACTTGTAGTGAGAGTGTGGTTCGAATCGACATAACTTTCATGATAAATGGCAAATGAATGTTCTTTGCCGAATTGTTGTTCGTCAAAAGGGATGGGTGCTTAGCCAAATACGTCGAAAGTCTCGTTGAGCACTTTTTCAATTGAGCAGGTCCATCCGGGTGGGTTCCCATCCAGAGCTGAAAACATTGTATTGAAAAGAGTTGATGTTTGTACTTTAGCGTTCAAAATTGCGAACAATCTTTCAAGGTCGGTTCAAGAAACCAATTCTAAGAAATCAGGTTCTTGATTCTGCAACAAAGATCAGAAAAGATTAAGATCACAAATAGTTTGCACTTTTAAATTCTTTTTTTGGTTTGCATGATTTTCTGACGCCCTGCTGAGGACGACAAATTGTTATTATGAGGGTAGAAAAATGTTTGTGTTTCCAAAATATGTGATGATGATCAGTTTTTTTTGAAAACCCCGTATGATATTGGAAATTAACTGAAGGCGTATTTTATGGTTTTATAAAGTAATTGTTGTGTGGGAAGGAATGAAAATGTTCATGTAGAGTGGAAAGAGTTAAATTCACAAAAAATGGCCATAGAGCTGAAAATTAGGACCTGGTTTATTTATTACCATCACACAACCTTTGATAAAAGGGTCCATACGTTGCCAAGTTTGAGCTCAAGTATCTCAACTGCTAAGCAAGATATCGAAAATGTGTCAACTGACAAAAACTTTTTTATCTTTGACAGGAATCGTGATAATTCGGCTCAAAGTTAAATGTTAGTAGACCCTTCTATTACAGGTTTTACGGAGAATCATAATATTTAGTGCCTGAACCGTAAAACCCTTTTCCAAGATTTTTTCATGTTTGA</canonical>
            <polymorphic>AAGCATATGCTAGCTCTGGCTTATGGTTTCTGTCTGGATAATTGATTGGGTCCAGTTCATGTAATCTGCGAGCCTGCTCCTAAAAAATTGAAAATATGATGTTTTTAATTTTTTTTTTAAATCGTACTTTGGTTGGATGGACTTGTAGTGAGAGTGTGGTTCGAATCGACATAACTTTCATGATAAATGGCAAATGAATGTTCTTTGCCGAATTGTTGTTCGTCAAAAGGGATGGGTGCTTAGCCAAATACGTCGAAAGTCTCGTTGAGCACTTTTTCAATTGAGCAGGTCCATCCGGGTGGGTTCCCATCCAGAGCTGAAAACATTGTATTGAAAAGAGTTGATGTTTGTACTTTAGCGTTCAAAATTGCGAACAATCTTTCAAGGTCGGTTCAAGAAACCAATTCTAAGAAATCAGGTTCTTGATTCTGCAACAAAGATCAGAAAAGATTAAGATCACAAATAGTTTGCACTTTTAAATTCTTTTTTTGGTTTGCATKATTTTCTGACGCCCTGCTGAGGACGACAAATTGTTATTATGAGGGTAGAAAAATGTTTGTGTTTCCAAAATATGTGATGATGATCAGTTTTTTTTGAAAACCCCGTATGATATTGGAAATTAACTGAAGGCGTATTTTATGGTTTTATAAAGTAATTGTTGTGTGGGAAGGAATGAAAATGTTCATGTAGAGTGGAAAGAGTTAAATTCACAAAAAATGGCCATAGAGCTGAAAATTAGGACCTGGTTTATTTATTACCATCACACAACCTTTGATAAAAGGGTCCATACGTTGCCAAGTTTGAGCTCAAGTATCTCAACTGCTAAGCAAGATATCGAAAATGTGTCAACTGACAAAAACTTTTTTATCTTTGACAGGAATCGTGATAATTCGGCTCAAAGTTAAATGTTAGTAGACCCTTCTATTACAGGTTTTACGGAGAATCATAATATTTAGTGCCTGAACCGTAAAACCCTTTTCCAAGATTTTTTCATGTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>318 308 187 121 58 8</canonical_bands>
                <polymorphic_bands>505 308 121 58 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAAAGAGTTGATGTTTGTACTT</pcr_primer_p1>
		<pcr_primer_p2>ATCATCACATATTTTGGAAACAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAAAAGAGTTGATGTTTGTACTTTAGCGTTCAAAATTGCGAACAATCTTTCAAGGTCGGTTCAAGAAACCAATTCTAAGAAATCAGGTTCTTGATTCTGCAACAAAGATCAGAAAAGATTAAGATCACAAATAGTTTGCACTTTTAAATTCTTTTTTTGGTTTGCATGATTTTCTGACGCCCTGCTGAGGACGACAAATTGTTATTATGAGGGTAGAAAAATGTTTGTGTTTCCAAAATATGTGATGAT</canonical_amplicon>
		<polymorphic_amplicon>TGAAAAGAGTTGATGTTTGTACTTTAGCGTTCAAAATTGCGAACAATCTTTCAAGGTCGGTTCAAGAAACCAATTCTAAGAAATCAGGTTCTTGATTCTGCAACAAAGATCAGAAAAGATTAAGATCACAAATAGTTTGCACTTTTAAATTCTTTTTTTGGTTTGCATKATTTTCTGACGCCCTGCTGAGGACGACAAATTGTTATTATGAGGGTAGAAAAATGTTTGTGTTTCCAAAATATGTGATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9742</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>316105</contig_pos>
        <strand>+</strand>
        <context>ATTTTCTGAC[C/G]MCCTGCTGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAATAGTTTGCACTTTTAAATTCTTTTTTTGGTTTGCATGATTTTCTGAC</left_flank>
        <right_flank>CCCTGCTGAGGACGACAAATTGTTATTATGAGGGTAGAAAAATGTTTGTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTCTGGCTTATGGTTTCTGTCTGGATAATTGATTGGGTCCAGTTCATGTAATCTGCGAGCCTGCTCCTAAAAAATTGAAAATATGATGTTTTTAATTTTTTTTTTAAATCGTACTTTGGTTGGATGGACTTGTAGTGAGAGTGTGGTTCGAATCGACATAACTTTCATGATAAATGGCAAATGAATGTTCTTTGCCGAATTGTTGTTCGTCAAAAGGGATGGGTGCTTAGCCAAATACGTCGAAAGTCTCGTTGAGCACTTTTTCAATTGAGCAGGTCCATCCGGGTGGGTTCCCATCCAGAGCTGAAAACATTGTATTGAAAAGAGTTGATGTTTGTACTTTAGCGTTCAAAATTGCGAACAATCTTTCAAGGTCGGTTCAAGAAACCAATTCTAAGAAATCAGGTTCTTGATTCTGCAACAAAGATCAGAAAAGATTAAGATCACAAATAGTTTGCACTTTTAAATTCTTTTTTTGGTTTGCATGATTTTCTGACGCCCTGCTGAGGACGACAAATTGTTATTATGAGGGTAGAAAAATGTTTGTGTTTCCAAAATATGTGATGATGATCAGTTTTTTTTGAAAACCCCGTATGATATTGGAAATTAACTGAAGGCGTATTTTATGGTTTTATAAAGTAATTGTTGTGTGGGAAGGAATGAAAATGTTCATGTAGAGTGGAAAGAGTTAAATTCACAAAAAATGGCCATAGAGCTGAAAATTAGGACCTGGTTTATTTATTACCATCACACAACCTTTGATAAAAGGGTCCATACGTTGCCAAGTTTGAGCTCAAGTATCTCAACTGCTAAGCAAGATATCGAAAATGTGTCAACTGACAAAAACTTTTTTATCTTTGACAGGAATCGTGATAATTCGGCTCAAAGTTAAATGTTAGTAGACCCTTCTATTACAGGTTTTACGGAGAATCATAATATTTAGTGCCTGAACCGTAAAACCCTTTTCCAAGATTTTTTCATGTTTGAGAATGAATTCT</canonical>
            <polymorphic>AGCTCTGGCTTATGGTTTCTGTCTGGATAATTGATTGGGTCCAGTTCATGTAATCTGCGAGCCTGCTCCTAAAAAATTGAAAATATGATGTTTTTAATTTTTTTTTTAAATCGTACTTTGGTTGGATGGACTTGTAGTGAGAGTGTGGTTCGAATCGACATAACTTTCATGATAAATGGCAAATGAATGTTCTTTGCCGAATTGTTGTTCGTCAAAAGGGATGGGTGCTTAGCCAAATACGTCGAAAGTCTCGTTGAGCACTTTTTCAATTGAGCAGGTCCATCCGGGTGGGTTCCCATCCAGAGCTGAAAACATTGTATTGAAAAGAGTTGATGTTTGTACTTTAGCGTTCAAAATTGCGAACAATCTTTCAAGGTCGGTTCAAGAAACCAATTCTAAGAAATCAGGTTCTTGATTCTGCAACAAAGATCAGAAAAGATTAAGATCACAAATAGTTTGCACTTTTAAATTCTTTTTTTGGTTTGCATGATTTTCTGACSCCCTGCTGAGGACGACAAATTGTTATTATGAGGGTAGAAAAATGTTTGTGTTTCCAAAATATGTGATGATGATCAGTTTTTTTTGAAAACCCCGTATGATATTGGAAATTAACTGAAGGCGTATTTTATGGTTTTATAAAGTAATTGTTGTGTGGGAAGGAATGAAAATGTTCATGTAGAGTGGAAAGAGTTAAATTCACAAAAAATGGCCATAGAGCTGAAAATTAGGACCTGGTTTATTTATTACCATCACACAACCTTTGATAAAAGGGTCCATACGTTGCCAAGTTTGAGCTCAAGTATCTCAACTGCTAAGCAAGATATCGAAAATGTGTCAACTGACAAAAACTTTTTTATCTTTGACAGGAATCGTGATAATTCGGCTCAAAGTTAAATGTTAGTAGACCCTTCTATTACAGGTTTTACGGAGAATCATAATATTTAGTGCCTGAACCGTAAAACCCTTTTCCAAGATTTTTTCATGTTTGAGAATGAATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATCACAAATAGTTTGCACTTT</pcr_primer_p1>
		<pcr_primer_p2>AACTCTTTCCACTCTACATGAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGATCACAAATAGTTTGCACTTTTAAATTCTTTTTTTGGTTTGCATGATTTTCTGACGCCCTGCTGAGGACGACAAATTGTTATTATGAGGGTAGAAAAATGTTTGTGTTTCCAAAATATGTGATGATGATCAGTTTTTTTTGAAAACCCCGTATGATATTGGAAATTAACTGAAGGCGTATTTTATGGTTTTATAAAGTAATTGTTGTGTGGGAAGGAATGAAAATGTTCATGTAGAGTGGAAAGAGTT</canonical_amplicon>
		<polymorphic_amplicon>AGATCACAAATAGTTTGCACTTTTAAATTCTTTTTTTGGTTTGCATGATTTTCTGACSCCCTGCTGAGGACGACAAATTGTTATTATGAGGGTAGAAAAATGTTTGTGTTTCCAAAATATGTGATGATGATCAGTTTTTTTTGAAAACCCCGTATGATATTGGAAATTAACTGAAGGCGTATTTTATGGTTTTATAAAGTAATTGTTGTGTGGGAAGGAATGAAAATGTTCATGTAGAGTGGAAAGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9743</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>316106</contig_pos>
        <strand>+</strand>
        <context>TTTTCTGACS[A/C]CCTGCTGAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATAGTTTGCACTTTTAAATTCTTTTTTTGGTTTGCATGATTTTCTGACG</left_flank>
        <right_flank>CCTGCTGAGGACGACAAATTGTTATTATGAGGGTAGAAAAATGTTTGTGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTCTGGCTTATGGTTTCTGTCTGGATAATTGATTGGGTCCAGTTCATGTAATCTGCGAGCCTGCTCCTAAAAAATTGAAAATATGATGTTTTTAATTTTTTTTTTAAATCGTACTTTGGTTGGATGGACTTGTAGTGAGAGTGTGGTTCGAATCGACATAACTTTCATGATAAATGGCAAATGAATGTTCTTTGCCGAATTGTTGTTCGTCAAAAGGGATGGGTGCTTAGCCAAATACGTCGAAAGTCTCGTTGAGCACTTTTTCAATTGAGCAGGTCCATCCGGGTGGGTTCCCATCCAGAGCTGAAAACATTGTATTGAAAAGAGTTGATGTTTGTACTTTAGCGTTCAAAATTGCGAACAATCTTTCAAGGTCGGTTCAAGAAACCAATTCTAAGAAATCAGGTTCTTGATTCTGCAACAAAGATCAGAAAAGATTAAGATCACAAATAGTTTGCACTTTTAAATTCTTTTTTTGGTTTGCATGATTTTCTGACGCCCTGCTGAGGACGACAAATTGTTATTATGAGGGTAGAAAAATGTTTGTGTTTCCAAAATATGTGATGATGATCAGTTTTTTTTGAAAACCCCGTATGATATTGGAAATTAACTGAAGGCGTATTTTATGGTTTTATAAAGTAATTGTTGTGTGGGAAGGAATGAAAATGTTCATGTAGAGTGGAAAGAGTTAAATTCACAAAAAATGGCCATAGAGCTGAAAATTAGGACCTGGTTTATTTATTACCATCACACAACCTTTGATAAAAGGGTCCATACGTTGCCAAGTTTGAGCTCAAGTATCTCAACTGCTAAGCAAGATATCGAAAATGTGTCAACTGACAAAAACTTTTTTATCTTTGACAGGAATCGTGATAATTCGGCTCAAAGTTAAATGTTAGTAGACCCTTCTATTACAGGTTTTACGGAGAATCATAATATTTAGTGCCTGAACCGTAAAACCCTTTTCCAAGATTTTTTCATGTTTGAGAATGAATTCTT</canonical>
            <polymorphic>GCTCTGGCTTATGGTTTCTGTCTGGATAATTGATTGGGTCCAGTTCATGTAATCTGCGAGCCTGCTCCTAAAAAATTGAAAATATGATGTTTTTAATTTTTTTTTTAAATCGTACTTTGGTTGGATGGACTTGTAGTGAGAGTGTGGTTCGAATCGACATAACTTTCATGATAAATGGCAAATGAATGTTCTTTGCCGAATTGTTGTTCGTCAAAAGGGATGGGTGCTTAGCCAAATACGTCGAAAGTCTCGTTGAGCACTTTTTCAATTGAGCAGGTCCATCCGGGTGGGTTCCCATCCAGAGCTGAAAACATTGTATTGAAAAGAGTTGATGTTTGTACTTTAGCGTTCAAAATTGCGAACAATCTTTCAAGGTCGGTTCAAGAAACCAATTCTAAGAAATCAGGTTCTTGATTCTGCAACAAAGATCAGAAAAGATTAAGATCACAAATAGTTTGCACTTTTAAATTCTTTTTTTGGTTTGCATGATTTTCTGACGMCCTGCTGAGGACGACAAATTGTTATTATGAGGGTAGAAAAATGTTTGTGTTTCCAAAATATGTGATGATGATCAGTTTTTTTTGAAAACCCCGTATGATATTGGAAATTAACTGAAGGCGTATTTTATGGTTTTATAAAGTAATTGTTGTGTGGGAAGGAATGAAAATGTTCATGTAGAGTGGAAAGAGTTAAATTCACAAAAAATGGCCATAGAGCTGAAAATTAGGACCTGGTTTATTTATTACCATCACACAACCTTTGATAAAAGGGTCCATACGTTGCCAAGTTTGAGCTCAAGTATCTCAACTGCTAAGCAAGATATCGAAAATGTGTCAACTGACAAAAACTTTTTTATCTTTGACAGGAATCGTGATAATTCGGCTCAAAGTTAAATGTTAGTAGACCCTTCTATTACAGGTTTTACGGAGAATCATAATATTTAGTGCCTGAACCGTAAAACCCTTTTCCAAGATTTTTTCATGTTTGAGAATGAATTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATCACAAATAGTTTGCACTTT</pcr_primer_p1>
		<pcr_primer_p2>AACTCTTTCCACTCTACATGAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGATCACAAATAGTTTGCACTTTTAAATTCTTTTTTTGGTTTGCATGATTTTCTGACGCCCTGCTGAGGACGACAAATTGTTATTATGAGGGTAGAAAAATGTTTGTGTTTCCAAAATATGTGATGATGATCAGTTTTTTTTGAAAACCCCGTATGATATTGGAAATTAACTGAAGGCGTATTTTATGGTTTTATAAAGTAATTGTTGTGTGGGAAGGAATGAAAATGTTCATGTAGAGTGGAAAGAGTT</canonical_amplicon>
		<polymorphic_amplicon>AGATCACAAATAGTTTGCACTTTTAAATTCTTTTTTTGGTTTGCATGATTTTCTGACGMCCTGCTGAGGACGACAAATTGTTATTATGAGGGTAGAAAAATGTTTGTGTTTCCAAAATATGTGATGATGATCAGTTTTTTTTGAAAACCCCGTATGATATTGGAAATTAACTGAAGGCGTATTTTATGGTTTTATAAAGTAATTGTTGTGTGGGAAGGAATGAAAATGTTCATGTAGAGTGGAAAGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9744</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>316117</contig_pos>
        <strand>+</strand>
        <context>CCTGCTGAGG[A/G]CGACAAATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTTAAATTCTTTTTTTGGTTTGCATGATTTTCTGACGCCCTGCTGAGG</left_flank>
        <right_flank>CGACAAATTGTTATTATGAGGGTAGAAAAATGTTTGTGTTTCCAAAATAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTTTCTGTCTGGATAATTGATTGGGTCCAGTTCATGTAATCTGCGAGCCTGCTCCTAAAAAATTGAAAATATGATGTTTTTAATTTTTTTTTTAAATCGTACTTTGGTTGGATGGACTTGTAGTGAGAGTGTGGTTCGAATCGACATAACTTTCATGATAAATGGCAAATGAATGTTCTTTGCCGAATTGTTGTTCGTCAAAAGGGATGGGTGCTTAGCCAAATACGTCGAAAGTCTCGTTGAGCACTTTTTCAATTGAGCAGGTCCATCCGGGTGGGTTCCCATCCAGAGCTGAAAACATTGTATTGAAAAGAGTTGATGTTTGTACTTTAGCGTTCAAAATTGCGAACAATCTTTCAAGGTCGGTTCAAGAAACCAATTCTAAGAAATCAGGTTCTTGATTCTGCAACAAAGATCAGAAAAGATTAAGATCACAAATAGTTTGCACTTTTAAATTCTTTTTTTGGTTTGCATGATTTTCTGACGCCCTGCTGAGGACGACAAATTGTTATTATGAGGGTAGAAAAATGTTTGTGTTTCCAAAATATGTGATGATGATCAGTTTTTTTTGAAAACCCCGTATGATATTGGAAATTAACTGAAGGCGTATTTTATGGTTTTATAAAGTAATTGTTGTGTGGGAAGGAATGAAAATGTTCATGTAGAGTGGAAAGAGTTAAATTCACAAAAAATGGCCATAGAGCTGAAAATTAGGACCTGGTTTATTTATTACCATCACACAACCTTTGATAAAAGGGTCCATACGTTGCCAAGTTTGAGCTCAAGTATCTCAACTGCTAAGCAAGATATCGAAAATGTGTCAACTGACAAAAACTTTTTTATCTTTGACAGGAATCGTGATAATTCGGCTCAAAGTTAAATGTTAGTAGACCCTTCTATTACAGGTTTTACGGAGAATCATAATATTTAGTGCCTGAACCGTAAAACCCTTTTCCAAGATTTTTTCATGTTTGAGAATGAATTCTTGACAACTCAAA</canonical>
            <polymorphic>TGGTTTCTGTCTGGATAATTGATTGGGTCCAGTTCATGTAATCTGCGAGCCTGCTCCTAAAAAATTGAAAATATGATGTTTTTAATTTTTTTTTTAAATCGTACTTTGGTTGGATGGACTTGTAGTGAGAGTGTGGTTCGAATCGACATAACTTTCATGATAAATGGCAAATGAATGTTCTTTGCCGAATTGTTGTTCGTCAAAAGGGATGGGTGCTTAGCCAAATACGTCGAAAGTCTCGTTGAGCACTTTTTCAATTGAGCAGGTCCATCCGGGTGGGTTCCCATCCAGAGCTGAAAACATTGTATTGAAAAGAGTTGATGTTTGTACTTTAGCGTTCAAAATTGCGAACAATCTTTCAAGGTCGGTTCAAGAAACCAATTCTAAGAAATCAGGTTCTTGATTCTGCAACAAAGATCAGAAAAGATTAAGATCACAAATAGTTTGCACTTTTAAATTCTTTTTTTGGTTTGCATGATTTTCTGACGCCCTGCTGAGGRCGACAAATTGTTATTATGAGGGTAGAAAAATGTTTGTGTTTCCAAAATATGTGATGATGATCAGTTTTTTTTGAAAACCCCGTATGATATTGGAAATTAACTGAAGGCGTATTTTATGGTTTTATAAAGTAATTGTTGTGTGGGAAGGAATGAAAATGTTCATGTAGAGTGGAAAGAGTTAAATTCACAAAAAATGGCCATAGAGCTGAAAATTAGGACCTGGTTTATTTATTACCATCACACAACCTTTGATAAAAGGGTCCATACGTTGCCAAGTTTGAGCTCAAGTATCTCAACTGCTAAGCAAGATATCGAAAATGTGTCAACTGACAAAAACTTTTTTATCTTTGACAGGAATCGTGATAATTCGGCTCAAAGTTAAATGTTAGTAGACCCTTCTATTACAGGTTTTACGGAGAATCATAATATTTAGTGCCTGAACCGTAAAACCCTTTTCCAAGATTTTTTCATGTTTGAGAATGAATTCTTGACAACTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTTGCACTTTTAAATTCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTGAATTTAACTCTTTCCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTTTGCACTTTTAAATTCTTTTTTTGGTTTGCATGATTTTCTGACGCCCTGCTGAGGACGACAAATTGTTATTATGAGGGTAGAAAAATGTTTGTGTTTCCAAAATATGTGATGATGATCAGTTTTTTTTGAAAACCCCGTATGATATTGGAAATTAACTGAAGGCGTATTTTATGGTTTTATAAAGTAATTGTTGTGTGGGAAGGAATGAAAATGTTCATGTAGAGTGGAAAGAGTTAAATTCACAAA</canonical_amplicon>
		<polymorphic_amplicon>AGTTTGCACTTTTAAATTCTTTTTTTGGTTTGCATGATTTTCTGACGCCCTGCTGAGGRCGACAAATTGTTATTATGAGGGTAGAAAAATGTTTGTGTTTCCAAAATATGTGATGATGATCAGTTTTTTTTGAAAACCCCGTATGATATTGGAAATTAACTGAAGGCGTATTTTATGGTTTTATAAAGTAATTGTTGTGTGGGAAGGAATGAAAATGTTCATGTAGAGTGGAAAGAGTTAAATTCACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9745</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>316149</contig_pos>
        <strand>+</strand>
        <context>GTAGAAAAAT[G/T]TTTGTGTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTGACGCCCTGCTGAGGACGACAAATTGTTATTATGAGGGTAGAAAAAT</left_flank>
        <right_flank>TTTGTGTTTCCAAAATATGTGATGATGATCAGTTTTTTTTGAAAACCCCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCATGTAATCTGCGAGCCTGCTCCTAAAAAATTGAAAATATGATGTTTTTAATTTTTTTTTTAAATCGTACTTTGGTTGGATGGACTTGTAGTGAGAGTGTGGTTCGAATCGACATAACTTTCATGATAAATGGCAAATGAATGTTCTTTGCCGAATTGTTGTTCGTCAAAAGGGATGGGTGCTTAGCCAAATACGTCGAAAGTCTCGTTGAGCACTTTTTCAATTGAGCAGGTCCATCCGGGTGGGTTCCCATCCAGAGCTGAAAACATTGTATTGAAAAGAGTTGATGTTTGTACTTTAGCGTTCAAAATTGCGAACAATCTTTCAAGGTCGGTTCAAGAAACCAATTCTAAGAAATCAGGTTCTTGATTCTGCAACAAAGATCAGAAAAGATTAAGATCACAAATAGTTTGCACTTTTAAATTCTTTTTTTGGTTTGCATGATTTTCTGACGCCCTGCTGAGGACGACAAATTGTTATTATGAGGGTAGAAAAATGTTTGTGTTTCCAAAATATGTGATGATGATCAGTTTTTTTTGAAAACCCCGTATGATATTGGAAATTAACTGAAGGCGTATTTTATGGTTTTATAAAGTAATTGTTGTGTGGGAAGGAATGAAAATGTTCATGTAGAGTGGAAAGAGTTAAATTCACAAAAAATGGCCATAGAGCTGAAAATTAGGACCTGGTTTATTTATTACCATCACACAACCTTTGATAAAAGGGTCCATACGTTGCCAAGTTTGAGCTCAAGTATCTCAACTGCTAAGCAAGATATCGAAAATGTGTCAACTGACAAAAACTTTTTTATCTTTGACAGGAATCGTGATAATTCGGCTCAAAGTTAAATGTTAGTAGACCCTTCTATTACAGGTTTTACGGAGAATCATAATATTTAGTGCCTGAACCGTAAAACCCTTTTCCAAGATTTTTTCATGTTTGAGAATGAATTCTTGACAACTCAAAACTCCAATAACTATTGAAACTTGTATTATACT</canonical>
            <polymorphic>TTCATGTAATCTGCGAGCCTGCTCCTAAAAAATTGAAAATATGATGTTTTTAATTTTTTTTTTAAATCGTACTTTGGTTGGATGGACTTGTAGTGAGAGTGTGGTTCGAATCGACATAACTTTCATGATAAATGGCAAATGAATGTTCTTTGCCGAATTGTTGTTCGTCAAAAGGGATGGGTGCTTAGCCAAATACGTCGAAAGTCTCGTTGAGCACTTTTTCAATTGAGCAGGTCCATCCGGGTGGGTTCCCATCCAGAGCTGAAAACATTGTATTGAAAAGAGTTGATGTTTGTACTTTAGCGTTCAAAATTGCGAACAATCTTTCAAGGTCGGTTCAAGAAACCAATTCTAAGAAATCAGGTTCTTGATTCTGCAACAAAGATCAGAAAAGATTAAGATCACAAATAGTTTGCACTTTTAAATTCTTTTTTTGGTTTGCATGATTTTCTGACGCCCTGCTGAGGACGACAAATTGTTATTATGAGGGTAGAAAAATKTTTGTGTTTCCAAAATATGTGATGATGATCAGTTTTTTTTGAAAACCCCGTATGATATTGGAAATTAACTGAAGGCGTATTTTATGGTTTTATAAAGTAATTGTTGTGTGGGAAGGAATGAAAATGTTCATGTAGAGTGGAAAGAGTTAAATTCACAAAAAATGGCCATAGAGCTGAAAATTAGGACCTGGTTTATTTATTACCATCACACAACCTTTGATAAAAGGGTCCATACGTTGCCAAGTTTGAGCTCAAGTATCTCAACTGCTAAGCAAGATATCGAAAATGTGTCAACTGACAAAAACTTTTTTATCTTTGACAGGAATCGTGATAATTCGGCTCAAAGTTAAATGTTAGTAGACCCTTCTATTACAGGTTTTACGGAGAATCATAATATTTAGTGCCTGAACCGTAAAACCCTTTTCCAAGATTTTTTCATGTTTGAGAATGAATTCTTGACAACTCAAAACTCCAATAACTATTGAAACTTGTATTATACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTTGCACTTTTAAATTCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTGAATTTAACTCTTTCCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTTTGCACTTTTAAATTCTTTTTTTGGTTTGCATGATTTTCTGACGCCCTGCTGAGGACGACAAATTGTTATTATGAGGGTAGAAAAATGTTTGTGTTTCCAAAATATGTGATGATGATCAGTTTTTTTTGAAAACCCCGTATGATATTGGAAATTAACTGAAGGCGTATTTTATGGTTTTATAAAGTAATTGTTGTGTGGGAAGGAATGAAAATGTTCATGTAGAGTGGAAAGAGTTAAATTCACAAA</canonical_amplicon>
		<polymorphic_amplicon>AGTTTGCACTTTTAAATTCTTTTTTTGGTTTGCATGATTTTCTGACGCCCTGCTGAGGACGACAAATTGTTATTATGAGGGTAGAAAAATKTTTGTGTTTCCAAAATATGTGATGATGATCAGTTTTTTTTGAAAACCCCGTATGATATTGGAAATTAACTGAAGGCGTATTTTATGGTTTTATAAAGTAATTGTTGTGTGGGAAGGAATGAAAATGTTCATGTAGAGTGGAAAGAGTTAAATTCACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9746</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>317763</contig_pos>
        <strand>+</strand>
        <context>TGGAAAAATG[A/G]GCGTCTTCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTCTCTTGTGTTCTTTTGTGTCTTCAAACAATACCTGGTTGGAAAAATG</left_flank>
        <right_flank>GCGTCTTCTTATTGCCATCCATCTCGAGGGGTAAACCTGTTCGTCCCCTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTTGAAGAATTTTTGAAAAATTTGGGGGAAGAACTTGGAGTTTAAGAAATAGAGAGATAGAGAGAGGTAAAGATGATAATATGAAAACGAAGGATGGAAGAAGTTGGGGGTGGTCAGAAAAGGGGAGGAGAAAAAGAACACTTTCAGGTTGTTGCTTTGATAGCGGATACCCTTTGGCCTTCAGAATCTAGAAAAACCGTTTCGCAACAAGAGAAAAGAAGAAGACGAAAAGAGAAGGGAGGGATCACATGAGAAGAGGATGATGAAAAAGAAAAAAGTGCATCGGTATCACCGTATCATATCAGAGAATGCAAACTGTCAGAGGGGTTAGGGGTTTAGATGAGGTTCTTGATGTTACATGATCTTTAGCTCGGGTCTTCTTTTCTCCGATAATTACTGTTAACGATGTTCATGAGTCTCGACGTCTTCATTGCTTTTTTCATCATTCTCTCTTGTGTTCTTTTGTGTCTTCAAACAATACCTGGTTGGAAAAATGAGCGTCTTCTTATTGCCATCCATCTCGAGGGGTAAACCTGTTCGTCCCCTGCAGTCCGAATAAGTGTGTAATAGTGCACGAAGAAGACAACAAAAAGAAAATGCGAAAAAGAGATGGGGGACCAGCATGGTCTTCTTCTCGATGACGATGTCTTCATTGAAAAACGAAGACGTCTTCAAGGAACTGGGAAGAGTCGAGAAAAGAGAAAAGATTGATGTGCGCCTCCGCGCGCCCTCTCACTGATGACGGAGAGGACTGTATTGGTTGTATCTATGCGGGCGTTAGGCCCCCTCTGATTTTTATCAACACACGGACATCGTCGGTTTTCTCCTTCTCCTTCTTCATCTCCAATCGGTCGGTCTCGGCAAGGTCATCAAGAAAACGGGCGTTTAGTATTCTCCGAAGCTCCACCCTCTCTACATTCACTCATCCGACGATTCTCGGCCGGAGGATCGGACTGTCACCGAAATGAAAGGGATATGCATCTAGGTATGTAGTACA</canonical>
            <polymorphic>GAATTTGAAGAATTTTTGAAAAATTTGGGGGAAGAACTTGGAGTTTAAGAAATAGAGAGATAGAGAGAGGTAAAGATGATAATATGAAAACGAAGGATGGAAGAAGTTGGGGGTGGTCAGAAAAGGGGAGGAGAAAAAGAACACTTTCAGGTTGTTGCTTTGATAGCGGATACCCTTTGGCCTTCAGAATCTAGAAAAACCGTTTCGCAACAAGAGAAAAGAAGAAGACGAAAAGAGAAGGGAGGGATCACATGAGAAGAGGATGATGAAAAAGAAAAAAGTGCATCGGTATCACCGTATCATATCAGAGAATGCAAACTGTCAGAGGGGTTAGGGGTTTAGATGAGGTTCTTGATGTTACATGATCTTTAGCTCGGGTCTTCTTTTCTCCGATAATTACTGTTAACGATGTTCATGAGTCTCGACGTCTTCATTGCTTTTTTCATCATTCTCTCTTGTGTTCTTTTGTGTCTTCAAACAATACCTGGTTGGAAAAATGRGCGTCTTCTTATTGCCATCCATCTCGAGGGGTAAACCTGTTCGTCCCCTGCAGTCCGAATAAGTGTGTAATAGTGCACGAAGAAGACAACAAAAAGAAAATGCGAAAAAGAGATGGGGGACCAGCATGGTCTTCTTCTCGATGACGATGTCTTCATTGAAAAACGAAGACGTCTTCAAGGAACTGGGAAGAGTCGAGAAAAGAGAAAAGATTGATGTGCGCCTCCGCGCGCCCTCTCACTGATGACGGAGAGGACTGTATTGGTTGTATCTATGCGGGCGTTAGGCCCCCTCTGATTTTTATCAACACACGGACATCGTCGGTTTTCTCCTTCTCCTTCTTCATCTCCAATCGGTCGGTCTCGGCAAGGTCATCAAGAAAACGGGCGTTTAGTATTCTCCGAAGCTCCACCCTCTCTACATTCACTCATCCGACGATTCTCGGCCGGAGGATCGGACTGTCACCGAAATGAAAGGGATATGCATCTAGGTATGTAGTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTAGATGAGGTTCTTGATG</pcr_primer_p1>
		<pcr_primer_p2>CTTCGTGCACTATTACACACTTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGTTTAGATGAGGTTCTTGATGTTACATGATCTTTAGCTCGGGTCTTCTTTTCTCCGATAATTACTGTTAACGATGTTCATGAGTCTCGACGTCTTCATTGCTTTTTTCATCATTCTCTCTTGTGTTCTTTTGTGTCTTCAAACAATACCTGGTTGGAAAAATGAGCGTCTTCTTATTGCCATCCATCTCGAGGGGTAAACCTGTTCGTCCCCTGCAGTCCGAATAAGTGTGTAATAGTGCACGAAG</canonical_amplicon>
		<polymorphic_amplicon>GGTTTAGATGAGGTTCTTGATGTTACATGATCTTTAGCTCGGGTCTTCTTTTCTCCGATAATTACTGTTAACGATGTTCATGAGTCTCGACGTCTTCATTGCTTTTTTCATCATTCTCTCTTGTGTTCTTTTGTGTCTTCAAACAATACCTGGTTGGAAAAATGRGCGTCTTCTTATTGCCATCCATCTCGAGGGGTAAACCTGTTCGTCCCCTGCAGTCCGAATAAGTGTGTAATAGTGCACGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9747</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>317586</contig_pos>
        <strand>+</strand>
        <context>TGCAAACTGT[C/T]AGAGGGGTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAAAAAGTGCATCGGTATCACCGTATCATATCAGAGAATGCAAACTGT</left_flank>
        <right_flank>AGAGGGGTTAGGGGTTTAGATGAGGTTCTTGATGTTACATGATCTTTAGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTATATCACAAAATGAAAGTATCGAGTAGATCAAAACTGTAGACGATAGAAGGCGAGAGAAGGATGACACGCTGTGCTGGGGGTGAAAACACCGGACGGGATGAAGTGGGTCAGCGAAGCGGAGATAGATGATGGGTAGCACTTGTAACGAACGATAGAGAAATCGATGGGGCTTTGAATTTGAAGAATTTTTGAAAAATTTGGGGGAAGAACTTGGAGTTTAAGAAATAGAGAGATAGAGAGAGGTAAAGATGATAATATGAAAACGAAGGATGGAAGAAGTTGGGGGTGGTCAGAAAAGGGGAGGAGAAAAAGAACACTTTCAGGTTGTTGCTTTGATAGCGGATACCCTTTGGCCTTCAGAATCTAGAAAAACCGTTTCGCAACAAGAGAAAAGAAGAAGACGAAAAGAGAAGGGAGGGATCACATGAGAAGAGGATGATGAAAAAGAAAAAAGTGCATCGGTATCACCGTATCATATCAGAGAATGCAAACTGTCAGAGGGGTTAGGGGTTTAGATGAGGTTCTTGATGTTACATGATCTTTAGCTCGGGTCTTCTTTTCTCCGATAATTACTGTTAACGATGTTCATGAGTCTCGACGTCTTCATTGCTTTTTTCATCATTCTCTCTTGTGTTCTTTTGTGTCTTCAAACAATACCTGGTTGGAAAAATGAGCGTCTTCTTATTGCCATCCATCTCGAGGGGTAAACCTGTTCGTCCCCTGCAGTCCGAATAAGTGTGTAATAGTGCACGAAGAAGACAACAAAAAGAAAATGCGAAAAAGAGATGGGGGACCAGCATGGTCTTCTTCTCGATGACGATGTCTTCATTGAAAAACGAAGACGTCTTCAAGGAACTGGGAAGAGTCGAGAAAAGAGAAAAGATTGATGTGCGCCTCCGCGCGCCCTCTCACTGATGACGGAGAGGACTGTATTGGTTGTATCTATGCGGGCGTTAGGCCCCCTCTGATTTTTATCAACACACGGACATCGTCGGT</canonical>
            <polymorphic>GTTATATCACAAAATGAAAGTATCGAGTAGATCAAAACTGTAGACGATAGAAGGCGAGAGAAGGATGACACGCTGTGCTGGGGGTGAAAACACCGGACGGGATGAAGTGGGTCAGCGAAGCGGAGATAGATGATGGGTAGCACTTGTAACGAACGATAGAGAAATCGATGGGGCTTTGAATTTGAAGAATTTTTGAAAAATTTGGGGGAAGAACTTGGAGTTTAAGAAATAGAGAGATAGAGAGAGGTAAAGATGATAATATGAAAACGAAGGATGGAAGAAGTTGGGGGTGGTCAGAAAAGGGGAGGAGAAAAAGAACACTTTCAGGTTGTTGCTTTGATAGCGGATACCCTTTGGCCTTCAGAATCTAGAAAAACCGTTTCGCAACAAGAGAAAAGAAGAAGACGAAAAGAGAAGGGAGGGATCACATGAGAAGAGGATGATGAAAAAGAAAAAAGTGCATCGGTATCACCGTATCATATCAGAGAATGCAAACTGTYAGAGGGGTTAGGGGTTTAGATGAGGTTCTTGATGTTACATGATCTTTAGCTCGGGTCTTCTTTTCTCCGATAATTACTGTTAACGATGTTCATGAGTCTCGACGTCTTCATTGCTTTTTTCATCATTCTCTCTTGTGTTCTTTTGTGTCTTCAAACAATACCTGGTTGGAAAAATGAGCGTCTTCTTATTGCCATCCATCTCGAGGGGTAAACCTGTTCGTCCCCTGCAGTCCGAATAAGTGTGTAATAGTGCACGAAGAAGACAACAAAAAGAAAATGCGAAAAAGAGATGGGGGACCAGCATGGTCTTCTTCTCGATGACGATGTCTTCATTGAAAAACGAAGACGTCTTCAAGGAACTGGGAAGAGTCGAGAAAAGAGAAAAGATTGATGTGCGCCTCCGCGCGCCCTCTCACTGATGACGGAGAGGACTGTATTGGTTGTATCTATGCGGGCGTTAGGCCCCCTCTGATTTTTATCAACACACGGACATCGTCGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>296 237 165 121 67 67 30 17</canonical_bands>
                <polymorphic_bands>296 237 165 121 84 67 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGAAGAAGACGAAAAGAGAAG</pcr_primer_p1>
		<pcr_primer_p2>AAAGAACACAAGAGAGAATGATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAGAAGAAGACGAAAAGAGAAGGGAGGGATCACATGAGAAGAGGATGATGAAAAAGAAAAAAGTGCATCGGTATCACCGTATCATATCAGAGAATGCAAACTGTCAGAGGGGTTAGGGGTTTAGATGAGGTTCTTGATGTTACATGATCTTTAGCTCGGGTCTTCTTTTCTCCGATAATTACTGTTAACGATGTTCATGAGTCTCGACGTCTTCATTGCTTTTTTCATCATTCTCTCTTGTGTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAGAAGAAGACGAAAAGAGAAGGGAGGGATCACATGAGAAGAGGATGATGAAAAAGAAAAAAGTGCATCGGTATCACCGTATCATATCAGAGAATGCAAACTGTYAGAGGGGTTAGGGGTTTAGATGAGGTTCTTGATGTTACATGATCTTTAGCTCGGGTCTTCTTTTCTCCGATAATTACTGTTAACGATGTTCATGAGTCTCGACGTCTTCATTGCTTTTTTCATCATTCTCTCTTGTGTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9748</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>354475</contig_pos>
        <strand>+</strand>
        <context>TGTACACTGT[A/G]CCATAATTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCCTTCTCCTCTCACTGACCATCCATTCCATATACGTCTTGTACACTGT</left_flank>
        <right_flank>CCATAATTCATTCTTCTTCTTTTATCTGGTGTTTCTTTCAAATGTGATTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTCTTCTTCTTCTTATTCTCAACCATTACGGCGATGGCGCATCTGCGACCCGACTTTTTCTCGCTTCTACTTTTTCTTTTTTCGAGTTTTTCTTCTTTGCGAAATTCGAGCCCATTGGTGGTGTGCTTTCTCCTTCCAATCGGGTGCTCTCTGAGCCGTTGGTAGCCTGCCCCAAATTGAGTTACACTTTTCTGGTCTTCTCTTCGTCATACATCCATCTCCGTGCCCAGAATAAGCAGCCACACTCTTTTTTGGTAGAGTAAGACCCCAGAAAAAAAAACGTTTGTTTATGTTGACCGAACCCTCTTTGACTTATATACTATGAAGGAACCTTCACCATTTTTTTCCGTGAGAGCAAAAGAAAATCGAAGCTAAGTAGTTCAACTTACAACTTGTTATTGCTCGTGATGCGCATAATAAGCTCCTTTTACACTTATTTTTTCAGAATCTCCTTCTCCTCTCACTGACCATCCATTCCATATACGTCTTGTACACTGTACCATAATTCATTCTTCTTCTTTTATCTGGTGTTTCTTTCAAATGTGATTTTTTGTATTCATATGGGTTTTGTATTCTTTGTCATGTATAAAACTTTTTTTGAAACTTTAATCTTGCGACGTTCTATTTGTATGGTATCCGGATCCATCGTCTCTATCTTCTCCTTTCTAACCGTCTCTTCTCATAAATGTTCTTTTACAGATTCAAAAGTTTCATGGATGAAACCCATAGTTTGTTACTGAACGAGGAAGCTCTTGAGGCTTGTCCTGAGCAGAAGCGTCCAGTTTTCATATACGAATGGCTTCGATACTTAGATCGGATACTTCCCATCACACAGAGGGAAGACCTCAAAAATGTGCAGAAGGAGTTACAGAGACAGTTAGAAGATCGACTGTATACTGTAGTGGGTCCACCGACGAGGAAACTGCTGACACGATGTATAGCACGGGTTTACGCACTTACTGGGGATATTGCCTCGATGAACAATCTACTCAACAATTG</canonical>
            <polymorphic>CGTCTTCTTCTTCTTATTCTCAACCATTACGGCGATGGCGCATCTGCGACCCGACTTTTTCTCGCTTCTACTTTTTCTTTTTTCGAGTTTTTCTTCTTTGCGAAATTCGAGCCCATTGGTGGTGTGCTTTCTCCTTCCAATCGGGTGCTCTCTGAGCCGTTGGTAGCCTGCCCCAAATTGAGTTACACTTTTCTGGTCTTCTCTTCGTCATACATCCATCTCCGTGCCCAGAATAAGCAGCCACACTCTTTTTTGGTAGAGTAAGACCCCAGAAAAAAAAACGTTTGTTTATGTTGACCGAACCCTCTTTGACTTATATACTATGAAGGAACCTTCACCATTTTTTTCCGTGAGAGCAAAAGAAAATCGAAGCTAAGTAGTTCAACTTACAACTTGTTATTGCTCGTGATGCGCATAATAAGCTCCTTTTACACTTATTTTTTCAGAATCTCCTTCTCCTCTCACTGACCATCCATTCCATATACGTCTTGTACACTGTRCCATAATTCATTCTTCTTCTTTTATCTGGTGTTTCTTTCAAATGTGATTTTTTGTATTCATATGGGTTTTGTATTCTTTGTCATGTATAAAACTTTTTTTGAAACTTTAATCTTGCGACGTTCTATTTGTATGGTATCCGGATCCATCGTCTCTATCTTCTCCTTTCTAACCGTCTCTTCTCATAAATGTTCTTTTACAGATTCAAAAGTTTCATGGATGAAACCCATAGTTTGTTACTGAACGAGGAAGCTCTTGAGGCTTGTCCTGAGCAGAAGCGTCCAGTTTTCATATACGAATGGCTTCGATACTTAGATCGGATACTTCCCATCACACAGAGGGAAGACCTCAAAAATGTGCAGAAGGAGTTACAGAGACAGTTAGAAGATCGACTGTATACTGTAGTGGGTCCACCGACGAGGAAACTGCTGACACGATGTATAGCACGGGTTTACGCACTTACTGGGGATATTGCCTCGATGAACAATCTACTCAACAATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 492 7</canonical_bands>
                <polymorphic_bands>508 492</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACTTGTTATTGCTCGTGAT</pcr_primer_p1>
		<pcr_primer_p2>GGATACCATACAAATAGAACGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAACTTGTTATTGCTCGTGATGCGCATAATAAGCTCCTTTTACACTTATTTTTTCAGAATCTCCTTCTCCTCTCACTGACCATCCATTCCATATACGTCTTGTACACTGTACCATAATTCATTCTTCTTCTTTTATCTGGTGTTTCTTTCAAATGTGATTTTTTGTATTCATATGGGTTTTGTATTCTTTGTCATGTATAAAACTTTTTTTGAAACTTTAATCTTGCGACGTTCTATTTGTATGGTATCC</canonical_amplicon>
		<polymorphic_amplicon>CAACTTGTTATTGCTCGTGATGCGCATAATAAGCTCCTTTTACACTTATTTTTTCAGAATCTCCTTCTCCTCTCACTGACCATCCATTCCATATACGTCTTGTACACTGTRCCATAATTCATTCTTCTTCTTTTATCTGGTGTTTCTTTCAAATGTGATTTTTTGTATTCATATGGGTTTTGTATTCTTTGTCATGTATAAAACTTTTTTTGAAACTTTAATCTTGCGACGTTCTATTTGTATGGTATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9749</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>461227</contig_pos>
        <strand>+</strand>
        <context>ATTTCGAAAA[A/C]ATCGGTTTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGGACTTTTGAACGAGAATCTCCTAGACATGTGCTCACTAATTTCGAAAA</left_flank>
        <right_flank>ATCGGTTTAGAAGTTTTGTTAAATTTGAGTTTGCAGTGTTTCAAGTGTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGTCCATTCCAGAATCTTCTCTCTTATCATTCCGATGAGAAGTTCTCTGTTCACAAGTCGTAAACAACAAAAAACCAAGTGGTGTTACCTGTGATGACGGTTGAAGTTGCCGGCCAATGCGACCTAAAAAGTACACTTTTATGTGGCTTGTATTTCGTTGAAACAGTCAGAACCGATTATCTGTTACTGATAATGAGGCTCGTCATATTTTCGATTCGGTTTCACTAGTTTATTGTGCCTAATCTAGTGGGGTTTGTAGCTTATGAAGTGTTCAGAAGATCAGTTCAAAACCGAAATGGATGAACTGGTGAACTTATGTTCGGTTGGGTTGAATCATTTTACAGACAAAGCAGACTAGATAGATGCTAGATGTCCGCTGAAAAGGTGCGGGGTGAACCGTCTAGTCGCCAAGGTGGCAATGCTGCCGGGCCATTAGCGGCTGGTCGACGGACTTTTGAACGAGAATCTCCTAGACATGTGCTCACTAATTTCGAAAAAATCGGTTTAGAAGTTTTGTTAAATTTGAGTTTGCAGTGTTTCAAGTGTTTGAAAAATCCATTCTAAACGTTCGCTTTAAATGCAATTATTTCGGTTCCTATAAGAGATATCAAAATTTTGTCAACAAATCAAATGTTGAAAATAACATGATAAACAATTTATCAGTGGACATCTTTCTGAAATCTTTGACAGGTGCCAAGATAATTGAGCTGAAAGTGTACTTATATAGTGGGCTTCTATTAGAGGGGTTACGCTATTTTTGTATAGCTCATCGCCTATTCGAAACAATATGGAAGTAAAACCGAAAATGACTGAGACAAAAGGAAAATGAATATAATGAGAATGACACCCATTTTGACTGGAATGGTCAGTTTGAGCCATTTGAGTGTCAATCAGTCCGTCTACCTTCATGATGCAAAACCAGAATAGTCTCCTTCTAACCAACCTCCTTTCAGAAAATATTTTTTCACATTCTCACTGTTACTCTAAATTTCAAAAAT</canonical>
            <polymorphic>CTCGTCCATTCCAGAATCTTCTCTCTTATCATTCCGATGAGAAGTTCTCTGTTCACAAGTCGTAAACAACAAAAAACCAAGTGGTGTTACCTGTGATGACGGTTGAAGTTGCCGGCCAATGCGACCTAAAAAGTACACTTTTATGTGGCTTGTATTTCGTTGAAACAGTCAGAACCGATTATCTGTTACTGATAATGAGGCTCGTCATATTTTCGATTCGGTTTCACTAGTTTATTGTGCCTAATCTAGTGGGGTTTGTAGCTTATGAAGTGTTCAGAAGATCAGTTCAAAACCGAAATGGATGAACTGGTGAACTTATGTTCGGTTGGGTTGAATCATTTTACAGACAAAGCAGACTAGATAGATGCTAGATGTCCGCTGAAAAGGTGCGGGGTGAACCGTCTAGTCGCCAAGGTGGCAATGCTGCCGGGCCATTAGCGGCTGGTCGACGGACTTTTGAACGAGAATCTCCTAGACATGTGCTCACTAATTTCGAAAAMATCGGTTTAGAAGTTTTGTTAAATTTGAGTTTGCAGTGTTTCAAGTGTTTGAAAAATCCATTCTAAACGTTCGCTTTAAATGCAATTATTTCGGTTCCTATAAGAGATATCAAAATTTTGTCAACAAATCAAATGTTGAAAATAACATGATAAACAATTTATCAGTGGACATCTTTCTGAAATCTTTGACAGGTGCCAAGATAATTGAGCTGAAAGTGTACTTATATAGTGGGCTTCTATTAGAGGGGTTACGCTATTTTTGTATAGCTCATCGCCTATTCGAAACAATATGGAAGTAAAACCGAAAATGACTGAGACAAAAGGAAAATGAATATAATGAGAATGACACCCATTTTGACTGGAATGGTCAGTTTGAGCCATTTGAGTGTCAATCAGTCCGTCTACCTTCATGATGCAAAACCAGAATAGTCTCCTTCTAACCAACCTCCTTTCAGAAAATATTTTTTCACATTCTCACTGTTACTCTAAATTTCAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTGAATCATTTTACAGACAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTAGAATGGATTTTTCAAACAC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GGTTGAATCATTTTACAGACAAAGCAGACTAGATAGATGCTAGATGTCCGCTGAAAAGGTGCGGGGTGAACCGTCTAGTCGCCAAGGTGGCAATGCTGCCGGGCCATTAGCGGCTGGTCGACGGACTTTTGAACGAGAATCTCCTAGACATGTGCTCACTAATTTCGAAAAAATCGGTTTAGAAGTTTTGTTAAATTTGAGTTTGCAGTGTTTCAAGTGTTTGAAAAATCCATTCTAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTTGAATCATTTTACAGACAAAGCAGACTAGATAGATGCTAGATGTCCGCTGAAAAGGTGCGGGGTGAACCGTCTAGTCGCCAAGGTGGCAATGCTGCCGGGCCATTAGCGGCTGGTCGACGGACTTTTGAACGAGAATCTCCTAGACATGTGCTCACTAATTTCGAAAAMATCGGTTTAGAAGTTTTGTTAAATTTGAGTTTGCAGTGTTTCAAGTGTTTGAAAAATCCATTCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9768</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>529994</contig_pos>
        <strand>+</strand>
        <context>ATCTGAATTA[A/G]RAAAAACTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATGAACGTTTAGCACTGTATCTCTCCCAGAGACATTGTATCTGAATTA</left_flank>
        <right_flank>AAAAAACTAGATTTGAAAACCGTCCCGATGTGATGAACCTGTATCCGTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGTGTTCTCGTAGTTGGCACTGGATTCTTCCATGGACTCATCATACTTCCAATCATCATCAGGTCCTTCGCTACTAACGCAAAAGCCCATGTCCCCACACATCCTCATTGATTTTTAGATTTTTGGTTTTTTTTTTCAGAATGCGGGTTTCTAGAGAATCAAATGAATTTGTTTTATTAGAAAAGAACACTCATATTATCCTAACAAATCTCATGACATTGATTAGCTCGCAACACGAGAATTGCAGCAATCGTCTCATTTTTTCGCTGAATTCGTCCGGATAAACCATCTTTAGGGCGATACATTGGGTTCACCGAGTCTAATCCAAAGTAGAAAGAATACAAGTTTTGCCCTCGTAAAAATGGTCTGATAATGTTACAAAACTCTTCTCCCTCCGTAGTTCGGTAACTTTCGCTGATGCAATCAGAAGATCCTTGAATTGAGCAATAATGAACGTTTAGCACTGTATCTCTCCCAGAGACATTGTATCTGAATTAGAAAAAACTAGATTTGAAAACCGTCCCGATGTGATGAACCTGTATCCGTAACAAGAAGTGTAGTCCATCCACTGGGGTTCGGATTTGAAATAGGTTTGATTTAATCCATTCAAATTAATGTGTCTGAGCATTGGAGTTTTGTCTTTTGGCTTTGATCCGGAGTCTGAAACAATTTATGGAACTTTGAAAACAGCTGATGCGCACATCCAACTGGAAGTTTTACTTTTGCCTTTTTTTTTGAAGGTGGAGCTGCACGAGGGAATCGTTTTTCACATCTTAAATCAGGAAATCTTGAATAAAAAAACTGCAATATTCCGATTACTCACTTTGTTTGACATTCTTCTTTTGTTAAAAAATTATTTCCGCTTTTTCCACACCCCGTATAATGAAATCCTTTGCATTGTCGAGCTCTCTTATTGAAGTAGTATCGATTCGACATTGCTTCACACCAACTTCCTCTGTCCAGTGATTCCATACACGGATCTGTTCCAGTCACTTCAC</canonical>
            <polymorphic>CCAGTGTTCTCGTAGTTGGCACTGGATTCTTCCATGGACTCATCATACTTCCAATCATCATCAGGTCCTTCGCTACTAACGCAAAAGCCCATGTCCCCACACATCCTCATTGATTTTTAGATTTTTGGTTTTTTTTTTCAGAATGCGGGTTTCTAGAGAATCAAATGAATTTGTTTTATTAGAAAAGAACACTCATATTATCCTAACAAATCTCATGACATTGATTAGCTCGCAACACGAGAATTGCAGCAATCGTCTCATTTTTTCGCTGAATTCGTCCGGATAAACCATCTTTAGGGCGATACATTGGGTTCACCGAGTCTAATCCAAAGTAGAAAGAATACAAGTTTTGCCCTCGTAAAAATGGTCTGATAATGTTACAAAACTCTTCTCCCTCCGTAGTTCGGTAACTTTCGCTGATGCAATCAGAAGATCCTTGAATTGAGCAATAATGAACGTTTAGCACTGTATCTCTCCCAGAGACATTGTATCTGAATTARAAAAAACTAGATTTGAAAACCGTCCCGATGTGATGAACCTGTATCCGTAACAAGAAGTGTAGTCCATCCACTGGGGTTCGGATTTGAAATAGGTTTGATTTAATCCATTCAAATTAATGTGTCTGAGCATTGGAGTTTTGTCTTTTGGCTTTGATCCGGAGTCTGAAACAATTTATGGAACTTTGAAAACAGCTGATGCGCACATCCAACTGGAAGTTTTACTTTTGCCTTTTTTTTTGAAGGTGGAGCTGCACGAGGGAATCGTTTTTCACATCTTAAATCAGGAAATCTTGAATAAAAAAACTGCAATATTCCGATTACTCACTTTGTTTGACATTCTTCTTTTGTTAAAAAATTATTTCCGCTTTTTCCACACCCCGTATAATGAAATCCTTTGCATTGTCGAGCTCTCTTATTGAAGTAGTATCGATTCGACATTGCTTCACACCAACTTCCTCTGTCCAGTGATTCCATACACGGATCTGTTCCAGTCACTTCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCCTTGAATTGAGCAATAAT</pcr_primer_p1>
		<pcr_primer_p2>GTTCCATAAATTGTTTCAGACTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCCTTGAATTGAGCAATAATGAACGTTTAGCACTGTATCTCTCCCAGAGACATTGTATCTGAATTAGAAAAAACTAGATTTGAAAACCGTCCCGATGTGATGAACCTGTATCCGTAACAAGAAGTGTAGTCCATCCACTGGGGTTCGGATTTGAAATAGGTTTGATTTAATCCATTCAAATTAATGTGTCTGAGCATTGGAGTTTTGTCTTTTGGCTTTGATCCGGAGTCTGAAACAATTTATGGAAC</canonical_amplicon>
		<polymorphic_amplicon>GATCCTTGAATTGAGCAATAATGAACGTTTAGCACTGTATCTCTCCCAGAGACATTGTATCTGAATTARAAAAAACTAGATTTGAAAACCGTCCCGATGTGATGAACCTGTATCCGTAACAAGAAGTGTAGTCCATCCACTGGGGTTCGGATTTGAAATAGGTTTGATTTAATCCATTCAAATTAATGTGTCTGAGCATTGGAGTTTTGTCTTTTGGCTTTGATCCGGAGTCTGAAACAATTTATGGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9769</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>530016</contig_pos>
        <strand></strand>
        <context>TTTGAAAACC[G/A]TCCCGATGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTCTCCCAGAGACATTGTATCTGAATTAGAAAAAACTAGATTTGAAAACC</left_flank>
        <right_flank>TCCCGATGTGATGAACCTGTATCCGTAACAAGAAGTGTAGTCCATCCACT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGATTCTTCCATGGACTCATCATACTTCCAATCATCATCAGGTCCTTCGCTACTAACGCAAAAGCCCATGTCCCCACACATCCTCATTGATTTTTAGATTTTTGGTTTTTTTTTTCAGAATGCGGGTTTCTAGAGAATCAAATGAATTTGTTTTATTAGAAAAGAACACTCATATTATCCTAACAAATCTCATGACATTGATTAGCTCGCAACACGAGAATTGCAGCAATCGTCTCATTTTTTCGCTGAATTCGTCCGGATAAACCATCTTTAGGGCGATACATTGGGTTCACCGAGTCTAATCCAAAGTAGAAAGAATACAAGTTTTGCCCTCGTAAAAATGGTCTGATAATGTTACAAAACTCTTCTCCCTCCGTAGTTCGGTAACTTTCGCTGATGCAATCAGAAGATCCTTGAATTGAGCAATAATGAACGTTTAGCACTGTATCTCTCCCAGAGACATTGTATCTGAATTAGAAAAAACTAGATTTGAAAACCGTCCCGATGTGATGAACCTGTATCCGTAACAAGAAGTGTAGTCCATCCACTGGGGTTCGGATTTGAAATAGGTTTGATTTAATCCATTCAAATTAATGTGTCTGAGCATTGGAGTTTTGTCTTTTGGCTTTGATCCGGAGTCTGAAACAATTTATGGAACTTTGAAAACAGCTGATGCGCACATCCAACTGGAAGTTTTACTTTTGCCTTTTTTTTTGAAGGTGGAGCTGCACGAGGGAATCGTTTTTCACATCTTAAATCAGGAAATCTTGAATAAAAAAACTGCAATATTCCGATTACTCACTTTGTTTGACATTCTTCTTTTGTTAAAAAATTATTTCCGCTTTTTCCACACCCCGTATAATGAAATCCTTTGCATTGTCGAGCTCTCTTATTGAAGTAGTATCGATTCGACATTGCTTCACACCAACTTCCTCTGTCCAGTGATTCCATACACGGATCTGTTCCAGTCACTTCACACGCCTTCTGGCAAATTTCAAA</canonical>
            <polymorphic>TGGATTCTTCCATGGACTCATCATACTTCCAATCATCATCAGGTCCTTCGCTACTAACGCAAAAGCCCATGTCCCCACACATCCTCATTGATTTTTAGATTTTTGGTTTTTTTTTTCAGAATGCGGGTTTCTAGAGAATCAAATGAATTTGTTTTATTAGAAAAGAACACTCATATTATCCTAACAAATCTCATGACATTGATTAGCTCGCAACACGAGAATTGCAGCAATCGTCTCATTTTTTCGCTGAATTCGTCCGGATAAACCATCTTTAGGGCGATACATTGGGTTCACCGAGTCTAATCCAAAGTAGAAAGAATACAAGTTTTGCCCTCGTAAAAATGGTCTGATAATGTTACAAAACTCTTCTCCCTCCGTAGTTCGGTAACTTTCGCTGATGCAATCAGAAGATCCTTGAATTGAGCAATAATGAACGTTTAGCACTGTATCTCTCCCAGAGACATTGTATCTGAATTAGAAAAAACTAGATTTGAAAACCRTCCCGATGTGATGAACCTGTATCCGTAACAAGAAGTGTAGTCCATCCACTGGGGTTCGGATTTGAAATAGGTTTGATTTAATCCATTCAAATTAATGTGTCTGAGCATTGGAGTTTTGTCTTTTGGCTTTGATCCGGAGTCTGAAACAATTTATGGAACTTTGAAAACAGCTGATGCGCACATCCAACTGGAAGTTTTACTTTTGCCTTTTTTTTTGAAGGTGGAGCTGCACGAGGGAATCGTTTTTCACATCTTAAATCAGGAAATCTTGAATAAAAAAACTGCAATATTCCGATTACTCACTTTGTTTGACATTCTTCTTTTGTTAAAAAATTATTTCCGCTTTTTCCACACCCCGTATAATGAAATCCTTTGCATTGTCGAGCTCTCTTATTGAAGTAGTATCGATTCGACATTGCTTCACACCAACTTCCTCTGTCCAGTGATTCCATACACGGATCTGTTCCAGTCACTTCACACGCCTTCTGGCAAATTTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 445 54</canonical_bands>
                <polymorphic_bands>555 445</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCCTTGAATTGAGCAATAAT</pcr_primer_p1>
		<pcr_primer_p2>GTTCCATAAATTGTTTCAGACTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCCTTGAATTGAGCAATAATGAACGTTTAGCACTGTATCTCTCCCAGAGACATTGTATCTGAATTAGAAAAAACTAGATTTGAAAACCGTCCCGATGTGATGAACCTGTATCCGTAACAAGAAGTGTAGTCCATCCACTGGGGTTCGGATTTGAAATAGGTTTGATTTAATCCATTCAAATTAATGTGTCTGAGCATTGGAGTTTTGTCTTTTGGCTTTGATCCGGAGTCTGAAACAATTTATGGAAC</canonical_amplicon>
		<polymorphic_amplicon>GATCCTTGAATTGAGCAATAATGAACGTTTAGCACTGTATCTCTCCCAGAGACATTGTATCTGAATTAGAAAAAACTAGATTTGAAAACCRTCCCGATGTGATGAACCTGTATCCGTAACAAGAAGTGTAGTCCATCCACTGGGGTTCGGATTTGAAATAGGTTTGATTTAATCCATTCAAATTAATGTGTCTGAGCATTGGAGTTTTGTCTTTTGGCTTTGATCCGGAGTCTGAAACAATTTATGGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9770</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>530218</contig_pos>
        <strand>+</strand>
        <context>AAGTTTTACT[G/T]TTGCCTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATGGAACTTTGAAAACAGCTGATGCGCACATCCAACTGGAAGTTTTACT</left_flank>
        <right_flank>TTGCCTTTTTTTTTGAAGGTGGAGCTGCACGAGGGAATCGTTTTTCACAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGCTCGCAACACGAGAATTGCAGCAATCGTCTCATTTTTTCGCTGAATTCGTCCGGATAAACCATCTTTAGGGCGATACATTGGGTTCACCGAGTCTAATCCAAAGTAGAAAGAATACAAGTTTTGCCCTCGTAAAAATGGTCTGATAATGTTACAAAACTCTTCTCCCTCCGTAGTTCGGTAACTTTCGCTGATGCAATCAGAAGATCCTTGAATTGAGCAATAATGAACGTTTAGCACTGTATCTCTCCCAGAGACATTGTATCTGAATTAGAAAAAACTAGATTTGAAAACCGTCCCGATGTGATGAACCTGTATCCGTAACAAGAAGTGTAGTCCATCCACTGGGGTTCGGATTTGAAATAGGTTTGATTTAATCCATTCAAATTAATGTGTCTGAGCATTGGAGTTTTGTCTTTTGGCTTTGATCCGGAGTCTGAAACAATTTATGGAACTTTGAAAACAGCTGATGCGCACATCCAACTGGAAGTTTTACTTTTGCCTTTTTTTTTGAAGGTGGAGCTGCACGAGGGAATCGTTTTTCACATCTTAAATCAGGAAATCTTGAATAAAAAAACTGCAATATTCCGATTACTCACTTTGTTTGACATTCTTCTTTTGTTAAAAAATTATTTCCGCTTTTTCCACACCCCGTATAATGAAATCCTTTGCATTGTCGAGCTCTCTTATTGAAGTAGTATCGATTCGACATTGCTTCACACCAACTTCCTCTGTCCAGTGATTCCATACACGGATCTGTTCCAGTCACTTCACACGCCTTCTGGCAAATTTCAAAAGTTTCAAATCTATTTGGGTTTCCTCCACATCCTCCATACAAAAATTGATCGCAAGTACCACGGGTTAAGTTGTAGAACCAGACATAACGCAATTGATTACAAGATCCCCAATCGGGTGGGAAGGAACAGATACCTGAAGTTCAACATTCTTCTGTACTTCTTTGATGGAAACACTCACGTGGATCATTACTATTCAATAGT</canonical>
            <polymorphic>TTAGCTCGCAACACGAGAATTGCAGCAATCGTCTCATTTTTTCGCTGAATTCGTCCGGATAAACCATCTTTAGGGCGATACATTGGGTTCACCGAGTCTAATCCAAAGTAGAAAGAATACAAGTTTTGCCCTCGTAAAAATGGTCTGATAATGTTACAAAACTCTTCTCCCTCCGTAGTTCGGTAACTTTCGCTGATGCAATCAGAAGATCCTTGAATTGAGCAATAATGAACGTTTAGCACTGTATCTCTCCCAGAGACATTGTATCTGAATTAGAAAAAACTAGATTTGAAAACCGTCCCGATGTGATGAACCTGTATCCGTAACAAGAAGTGTAGTCCATCCACTGGGGTTCGGATTTGAAATAGGTTTGATTTAATCCATTCAAATTAATGTGTCTGAGCATTGGAGTTTTGTCTTTTGGCTTTGATCCGGAGTCTGAAACAATTTATGGAACTTTGAAAACAGCTGATGCGCACATCCAACTGGAAGTTTTACTKTTGCCTTTTTTTTTGAAGGTGGAGCTGCACGAGGGAATCGTTTTTCACATCTTAAATCAGGAAATCTTGAATAAAAAAACTGCAATATTCCGATTACTCACTTTGTTTGACATTCTTCTTTTGTTAAAAAATTATTTCCGCTTTTTCCACACCCCGTATAATGAAATCCTTTGCATTGTCGAGCTCTCTTATTGAAGTAGTATCGATTCGACATTGCTTCACACCAACTTCCTCTGTCCAGTGATTCCATACACGGATCTGTTCCAGTCACTTCACACGCCTTCTGGCAAATTTCAAAAGTTTCAAATCTATTTGGGTTTCCTCCACATCCTCCATACAAAAATTGATCGCAAGTACCACGGGTTAAGTTGTAGAACCAGACATAACGCAATTGATTACAAGATCCCCAATCGGGTGGGAAGGAACAGATACCTGAAGTTCAACATTCTTCTGTACTTCTTTGATGGAAACACTCACGTGGATCATTACTATTCAATAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCTGTATCCGTAACAAGAAGT</pcr_primer_p1>
		<pcr_primer_p2>TCCTGATTTAAGATGTGAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AACCTGTATCCGTAACAAGAAGTGTAGTCCATCCACTGGGGTTCGGATTTGAAATAGGTTTGATTTAATCCATTCAAATTAATGTGTCTGAGCATTGGAGTTTTGTCTTTTGGCTTTGATCCGGAGTCTGAAACAATTTATGGAACTTTGAAAACAGCTGATGCGCACATCCAACTGGAAGTTTTACTTTTGCCTTTTTTTTTGAAGGTGGAGCTGCACGAGGGAATCGTTTTTCACATCTTAAATCAGGA</canonical_amplicon>
		<polymorphic_amplicon>AACCTGTATCCGTAACAAGAAGTGTAGTCCATCCACTGGGGTTCGGATTTGAAATAGGTTTGATTTAATCCATTCAAATTAATGTGTCTGAGCATTGGAGTTTTGTCTTTTGGCTTTGATCCGGAGTCTGAAACAATTTATGGAACTTTGAAAACAGCTGATGCGCACATCCAACTGGAAGTTTTACTKTTGCCTTTTTTTTTGAAGGTGGAGCTGCACGAGGGAATCGTTTTTCACATCTTAAATCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9771</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>530293</contig_pos>
        <strand>+</strand>
        <context>TCTTGAATAA[A/C]AAAACTGCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGCACGAGGGAATCGTTTTTCACATCTTAAATCAGGAAATCTTGAATAA</left_flank>
        <right_flank>AAAACTGCAATATTCCGATTACTCACTTTGTTTGACATTCTTCTTTTGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATACATTGGGTTCACCGAGTCTAATCCAAAGTAGAAAGAATACAAGTTTTGCCCTCGTAAAAATGGTCTGATAATGTTACAAAACTCTTCTCCCTCCGTAGTTCGGTAACTTTCGCTGATGCAATCAGAAGATCCTTGAATTGAGCAATAATGAACGTTTAGCACTGTATCTCTCCCAGAGACATTGTATCTGAATTAGAAAAAACTAGATTTGAAAACCGTCCCGATGTGATGAACCTGTATCCGTAACAAGAAGTGTAGTCCATCCACTGGGGTTCGGATTTGAAATAGGTTTGATTTAATCCATTCAAATTAATGTGTCTGAGCATTGGAGTTTTGTCTTTTGGCTTTGATCCGGAGTCTGAAACAATTTATGGAACTTTGAAAACAGCTGATGCGCACATCCAACTGGAAGTTTTACTTTTGCCTTTTTTTTTGAAGGTGGAGCTGCACGAGGGAATCGTTTTTCACATCTTAAATCAGGAAATCTTGAATAAAAAAACTGCAATATTCCGATTACTCACTTTGTTTGACATTCTTCTTTTGTTAAAAAATTATTTCCGCTTTTTCCACACCCCGTATAATGAAATCCTTTGCATTGTCGAGCTCTCTTATTGAAGTAGTATCGATTCGACATTGCTTCACACCAACTTCCTCTGTCCAGTGATTCCATACACGGATCTGTTCCAGTCACTTCACACGCCTTCTGGCAAATTTCAAAAGTTTCAAATCTATTTGGGTTTCCTCCACATCCTCCATACAAAAATTGATCGCAAGTACCACGGGTTAAGTTGTAGAACCAGACATAACGCAATTGATTACAAGATCCCCAATCGGGTGGGAAGGAACAGATACCTGAAGTTCAACATTCTTCTGTACTTCTTTGATGGAAACACTCACGTGGATCATTACTATTCAATAGTCCCTTGCAAGTCTGTTCACAAGAGTTTTGAGTCGCAAATCGATTTCTATTCCCTCCGCATCCAGAATAAGTGAAT</canonical>
            <polymorphic>CGATACATTGGGTTCACCGAGTCTAATCCAAAGTAGAAAGAATACAAGTTTTGCCCTCGTAAAAATGGTCTGATAATGTTACAAAACTCTTCTCCCTCCGTAGTTCGGTAACTTTCGCTGATGCAATCAGAAGATCCTTGAATTGAGCAATAATGAACGTTTAGCACTGTATCTCTCCCAGAGACATTGTATCTGAATTAGAAAAAACTAGATTTGAAAACCGTCCCGATGTGATGAACCTGTATCCGTAACAAGAAGTGTAGTCCATCCACTGGGGTTCGGATTTGAAATAGGTTTGATTTAATCCATTCAAATTAATGTGTCTGAGCATTGGAGTTTTGTCTTTTGGCTTTGATCCGGAGTCTGAAACAATTTATGGAACTTTGAAAACAGCTGATGCGCACATCCAACTGGAAGTTTTACTTTTGCCTTTTTTTTTGAAGGTGGAGCTGCACGAGGGAATCGTTTTTCACATCTTAAATCAGGAAATCTTGAATAAMAAAACTGCAATATTCCGATTACTCACTTTGTTTGACATTCTTCTTTTGTTAAAAAATTATTTCCGCTTTTTCCACACCCCGTATAATGAAATCCTTTGCATTGTCGAGCTCTCTTATTGAAGTAGTATCGATTCGACATTGCTTCACACCAACTTCCTCTGTCCAGTGATTCCATACACGGATCTGTTCCAGTCACTTCACACGCCTTCTGGCAAATTTCAAAAGTTTCAAATCTATTTGGGTTTCCTCCACATCCTCCATACAAAAATTGATCGCAAGTACCACGGGTTAAGTTGTAGAACCAGACATAACGCAATTGATTACAAGATCCCCAATCGGGTGGGAAGGAACAGATACCTGAAGTTCAACATTCTTCTGTACTTCTTTGATGGAAACACTCACGTGGATCATTACTATTCAATAGTCCCTTGCAAGTCTGTTCACAAGAGTTTTGAGTCGCAAATCGATTTCTATTCCCTCCGCATCCAGAATAAGTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTCTGAAACAATTTATGGAAC</pcr_primer_p1>
		<pcr_primer_p2>CAATGCAAAGGATTTCATTATAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GAGTCTGAAACAATTTATGGAACTTTGAAAACAGCTGATGCGCACATCCAACTGGAAGTTTTACTTTTGCCTTTTTTTTTGAAGGTGGAGCTGCACGAGGGAATCGTTTTTCACATCTTAAATCAGGAAATCTTGAATAAAAAAACTGCAATATTCCGATTACTCACTTTGTTTGACATTCTTCTTTTGTTAAAAAATTATTTCCGCTTTTTCCACACCCCGTATAATGAAATCCTTTGCATTG</canonical_amplicon>
		<polymorphic_amplicon>GAGTCTGAAACAATTTATGGAACTTTGAAAACAGCTGATGCGCACATCCAACTGGAAGTTTTACTTTTGCCTTTTTTTTTGAAGGTGGAGCTGCACGAGGGAATCGTTTTTCACATCTTAAATCAGGAAATCTTGAATAAMAAAACTGCAATATTCCGATTACTCACTTTGTTTGACATTCTTCTTTTGTTAAAAAATTATTTCCGCTTTTTCCACACCCCGTATAATGAAATCCTTTGCATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9772</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>530832</contig_pos>
        <strand>+</strand>
        <context>ATCTCTGCAG[C/T]GGATAGGAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAATAAGTGAATGAAGTACACTTCTGAGCTCCGTATGTCCATCTCTGCAG</left_flank>
        <right_flank>GGATAGGAACTCGAATTCTTTCCGCAGATTCCCTTGTCTCCCGGTGCTTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCTTTTGTTAAAAAATTATTTCCGCTTTTTCCACACCCCGTATAATGAAATCCTTTGCATTGTCGAGCTCTCTTATTGAAGTAGTATCGATTCGACATTGCTTCACACCAACTTCCTCTGTCCAGTGATTCCATACACGGATCTGTTCCAGTCACTTCACACGCCTTCTGGCAAATTTCAAAAGTTTCAAATCTATTTGGGTTTCCTCCACATCCTCCATACAAAAATTGATCGCAAGTACCACGGGTTAAGTTGTAGAACCAGACATAACGCAATTGATTACAAGATCCCCAATCGGGTGGGAAGGAACAGATACCTGAAGTTCAACATTCTTCTGTACTTCTTTGATGGAAACACTCACGTGGATCATTACTATTCAATAGTCCCTTGCAAGTCTGTTCACAAGAGTTTTGAGTCGCAAATCGATTTCTATTCCCTCCGCATCCAGAATAAGTGAATGAAGTACACTTCTGAGCTCCGTATGTCCATCTCTGCAGCGGATAGGAACTCGAATTCTTTCCGCAGATTCCCTTGTCTCCCGGTGCTTCGAAGCACACTGTAATATTGGATTGACTATTTTCTATGTTTTTTCCCTTGTCTGATTTTCTGTTTTCTTGTATTGTCATATCACTTCAATCAGTCCATCAGAGAAACCATTTATTATAAAAGGGGTTGGACATAAAATACTTTCGTTAGTAGAAGCTCAATACGTGGATCAAACTGAAATGACAGACATACGAAAATCAGAAAAAGTAAGACAAAAGCGGACAAAAAACACACACACAACCGGGAAATTTTCTAAGATCAGATGGCAATAGAGATTCAAAAAGAAATGAGAAGAAAACGAATCAATTAAAGTTGTTGCACTCTAGCACGGATCTTTCGAATTCCAAACTTTGGCCTACCCTCGCTGCTTGCTCGAGTTTTCCGTTCCAATTCTCTGGGCTGATTGGATCGAGAACAAGTTCGCTGACAAATTTCGTACGAGTAGAAGTTAT</canonical>
            <polymorphic>CTTCTTTTGTTAAAAAATTATTTCCGCTTTTTCCACACCCCGTATAATGAAATCCTTTGCATTGTCGAGCTCTCTTATTGAAGTAGTATCGATTCGACATTGCTTCACACCAACTTCCTCTGTCCAGTGATTCCATACACGGATCTGTTCCAGTCACTTCACACGCCTTCTGGCAAATTTCAAAAGTTTCAAATCTATTTGGGTTTCCTCCACATCCTCCATACAAAAATTGATCGCAAGTACCACGGGTTAAGTTGTAGAACCAGACATAACGCAATTGATTACAAGATCCCCAATCGGGTGGGAAGGAACAGATACCTGAAGTTCAACATTCTTCTGTACTTCTTTGATGGAAACACTCACGTGGATCATTACTATTCAATAGTCCCTTGCAAGTCTGTTCACAAGAGTTTTGAGTCGCAAATCGATTTCTATTCCCTCCGCATCCAGAATAAGTGAATGAAGTACACTTCTGAGCTCCGTATGTCCATCTCTGCAGYGGATAGGAACTCGAATTCTTTCCGCAGATTCCCTTGTCTCCCGGTGCTTCGAAGCACACTGTAATATTGGATTGACTATTTTCTATGTTTTTTCCCTTGTCTGATTTTCTGTTTTCTTGTATTGTCATATCACTTCAATCAGTCCATCAGAGAAACCATTTATTATAAAAGGGGTTGGACATAAAATACTTTCGTTAGTAGAAGCTCAATACGTGGATCAAACTGAAATGACAGACATACGAAAATCAGAAAAAGTAAGACAAAAGCGGACAAAAAACACACACACAACCGGGAAATTTTCTAAGATCAGATGGCAATAGAGATTCAAAAAGAAATGAGAAGAAAACGAATCAATTAAAGTTGTTGCACTCTAGCACGGATCTTTCGAATTCCAAACTTTGGCCTACCCTCGCTGCTTGCTCGAGTTTTCCGTTCCAATTCTCTGGGCTGATTGGATCGAGAACAAGTTCGCTGACAAATTTCGTACGAGTAGAAGTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>499 416 85</canonical_bands>
                <polymorphic_bands>915 85</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>496 416 88</canonical_bands>
                <polymorphic_bands>912 88</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTGTTCACAAGAGTTTTGAGT</pcr_primer_p1>
		<pcr_primer_p2>GACTGATTGAAGTGATATGACAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCTGTTCACAAGAGTTTTGAGTCGCAAATCGATTTCTATTCCCTCCGCATCCAGAATAAGTGAATGAAGTACACTTCTGAGCTCCGTATGTCCATCTCTGCAGCGGATAGGAACTCGAATTCTTTCCGCAGATTCCCTTGTCTCCCGGTGCTTCGAAGCACACTGTAATATTGGATTGACTATTTTCTATGTTTTTTCCCTTGTCTGATTTTCTGTTTTCTTGTATTGTCATATCACTTCAATCAGTC</canonical_amplicon>
		<polymorphic_amplicon>GTCTGTTCACAAGAGTTTTGAGTCGCAAATCGATTTCTATTCCCTCCGCATCCAGAATAAGTGAATGAAGTACACTTCTGAGCTCCGTATGTCCATCTCTGCAGYGGATAGGAACTCGAATTCTTTCCGCAGATTCCCTTGTCTCCCGGTGCTTCGAAGCACACTGTAATATTGGATTGACTATTTTCTATGTTTTTTCCCTTGTCTGATTTTCTGTTTTCTTGTATTGTCATATCACTTCAATCAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9773</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>530920</contig_pos>
        <strand>+</strand>
        <context>ATTTTCTATG[C/T]TTTTTCCCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCCCGGTGCTTCGAAGCACACTGTAATATTGGATTGACTATTTTCTATG</left_flank>
        <right_flank>TTTTTCCCTTGTCTGATTTTCTGTTTTCTTGTATTGTCATATCACTTCAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGATTCGACATTGCTTCACACCAACTTCCTCTGTCCAGTGATTCCATACACGGATCTGTTCCAGTCACTTCACACGCCTTCTGGCAAATTTCAAAAGTTTCAAATCTATTTGGGTTTCCTCCACATCCTCCATACAAAAATTGATCGCAAGTACCACGGGTTAAGTTGTAGAACCAGACATAACGCAATTGATTACAAGATCCCCAATCGGGTGGGAAGGAACAGATACCTGAAGTTCAACATTCTTCTGTACTTCTTTGATGGAAACACTCACGTGGATCATTACTATTCAATAGTCCCTTGCAAGTCTGTTCACAAGAGTTTTGAGTCGCAAATCGATTTCTATTCCCTCCGCATCCAGAATAAGTGAATGAAGTACACTTCTGAGCTCCGTATGTCCATCTCTGCAGCGGATAGGAACTCGAATTCTTTCCGCAGATTCCCTTGTCTCCCGGTGCTTCGAAGCACACTGTAATATTGGATTGACTATTTTCTATGTTTTTTCCCTTGTCTGATTTTCTGTTTTCTTGTATTGTCATATCACTTCAATCAGTCCATCAGAGAAACCATTTATTATAAAAGGGGTTGGACATAAAATACTTTCGTTAGTAGAAGCTCAATACGTGGATCAAACTGAAATGACAGACATACGAAAATCAGAAAAAGTAAGACAAAAGCGGACAAAAAACACACACACAACCGGGAAATTTTCTAAGATCAGATGGCAATAGAGATTCAAAAAGAAATGAGAAGAAAACGAATCAATTAAAGTTGTTGCACTCTAGCACGGATCTTTCGAATTCCAAACTTTGGCCTACCCTCGCTGCTTGCTCGAGTTTTCCGTTCCAATTCTCTGGGCTGATTGGATCGAGAACAAGTTCGCTGACAAATTTCGTACGAGTAGAAGTTATTCGCATTACCTCCACATCCCAGATACCACATTTGAGAACATTTTCCTGGAAAACAAAGCTTCGAATCATACCAGATTCAGTGATATTT</canonical>
            <polymorphic>TCGATTCGACATTGCTTCACACCAACTTCCTCTGTCCAGTGATTCCATACACGGATCTGTTCCAGTCACTTCACACGCCTTCTGGCAAATTTCAAAAGTTTCAAATCTATTTGGGTTTCCTCCACATCCTCCATACAAAAATTGATCGCAAGTACCACGGGTTAAGTTGTAGAACCAGACATAACGCAATTGATTACAAGATCCCCAATCGGGTGGGAAGGAACAGATACCTGAAGTTCAACATTCTTCTGTACTTCTTTGATGGAAACACTCACGTGGATCATTACTATTCAATAGTCCCTTGCAAGTCTGTTCACAAGAGTTTTGAGTCGCAAATCGATTTCTATTCCCTCCGCATCCAGAATAAGTGAATGAAGTACACTTCTGAGCTCCGTATGTCCATCTCTGCAGCGGATAGGAACTCGAATTCTTTCCGCAGATTCCCTTGTCTCCCGGTGCTTCGAAGCACACTGTAATATTGGATTGACTATTTTCTATGYTTTTTCCCTTGTCTGATTTTCTGTTTTCTTGTATTGTCATATCACTTCAATCAGTCCATCAGAGAAACCATTTATTATAAAAGGGGTTGGACATAAAATACTTTCGTTAGTAGAAGCTCAATACGTGGATCAAACTGAAATGACAGACATACGAAAATCAGAAAAAGTAAGACAAAAGCGGACAAAAAACACACACACAACCGGGAAATTTTCTAAGATCAGATGGCAATAGAGATTCAAAAAGAAATGAGAAGAAAACGAATCAATTAAAGTTGTTGCACTCTAGCACGGATCTTTCGAATTCCAAACTTTGGCCTACCCTCGCTGCTTGCTCGAGTTTTCCGTTCCAATTCTCTGGGCTGATTGGATCGAGAACAAGTTCGCTGACAAATTTCGTACGAGTAGAAGTTATTCGCATTACCTCCACATCCCAGATACCACATTTGAGAACATTTTCCTGGAAAACAAAGCTTCGAATCATACCAGATTCAGTGATATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTGTTCACAAGAGTTTTGAGT</pcr_primer_p1>
		<pcr_primer_p2>GACTGATTGAAGTGATATGACAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCTGTTCACAAGAGTTTTGAGTCGCAAATCGATTTCTATTCCCTCCGCATCCAGAATAAGTGAATGAAGTACACTTCTGAGCTCCGTATGTCCATCTCTGCAGCGGATAGGAACTCGAATTCTTTCCGCAGATTCCCTTGTCTCCCGGTGCTTCGAAGCACACTGTAATATTGGATTGACTATTTTCTATGTTTTTTCCCTTGTCTGATTTTCTGTTTTCTTGTATTGTCATATCACTTCAATCAGTC</canonical_amplicon>
		<polymorphic_amplicon>GTCTGTTCACAAGAGTTTTGAGTCGCAAATCGATTTCTATTCCCTCCGCATCCAGAATAAGTGAATGAAGTACACTTCTGAGCTCCGTATGTCCATCTCTGCAGCGGATAGGAACTCGAATTCTTTCCGCAGATTCCCTTGTCTCCCGGTGCTTCGAAGCACACTGTAATATTGGATTGACTATTTTCTATGYTTTTTCCCTTGTCTGATTTTCTGTTTTCTTGTATTGTCATATCACTTCAATCAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9774</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>530939</contig_pos>
        <strand>+</strand>
        <context>TTGTCTGATT[C/T]TCTGTTTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACTGTAATATTGGATTGACTATTTTCTATGTTTTTTCCCTTGTCTGATT</left_flank>
        <right_flank>TCTGTTTTCTTGTATTGTCATATCACTTCAATCAGTCCATCAGAGAAACC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACCAACTTCCTCTGTCCAGTGATTCCATACACGGATCTGTTCCAGTCACTTCACACGCCTTCTGGCAAATTTCAAAAGTTTCAAATCTATTTGGGTTTCCTCCACATCCTCCATACAAAAATTGATCGCAAGTACCACGGGTTAAGTTGTAGAACCAGACATAACGCAATTGATTACAAGATCCCCAATCGGGTGGGAAGGAACAGATACCTGAAGTTCAACATTCTTCTGTACTTCTTTGATGGAAACACTCACGTGGATCATTACTATTCAATAGTCCCTTGCAAGTCTGTTCACAAGAGTTTTGAGTCGCAAATCGATTTCTATTCCCTCCGCATCCAGAATAAGTGAATGAAGTACACTTCTGAGCTCCGTATGTCCATCTCTGCAGCGGATAGGAACTCGAATTCTTTCCGCAGATTCCCTTGTCTCCCGGTGCTTCGAAGCACACTGTAATATTGGATTGACTATTTTCTATGTTTTTTCCCTTGTCTGATTTTCTGTTTTCTTGTATTGTCATATCACTTCAATCAGTCCATCAGAGAAACCATTTATTATAAAAGGGGTTGGACATAAAATACTTTCGTTAGTAGAAGCTCAATACGTGGATCAAACTGAAATGACAGACATACGAAAATCAGAAAAAGTAAGACAAAAGCGGACAAAAAACACACACACAACCGGGAAATTTTCTAAGATCAGATGGCAATAGAGATTCAAAAAGAAATGAGAAGAAAACGAATCAATTAAAGTTGTTGCACTCTAGCACGGATCTTTCGAATTCCAAACTTTGGCCTACCCTCGCTGCTTGCTCGAGTTTTCCGTTCCAATTCTCTGGGCTGATTGGATCGAGAACAAGTTCGCTGACAAATTTCGTACGAGTAGAAGTTATTCGCATTACCTCCACATCCCAGATACCACATTTGAGAACATTTTCCTGGAAAACAAAGCTTCGAATCATACCAGATTCAGTGATATTTTACCATAACTCCGATCGTA</canonical>
            <polymorphic>CACCAACTTCCTCTGTCCAGTGATTCCATACACGGATCTGTTCCAGTCACTTCACACGCCTTCTGGCAAATTTCAAAAGTTTCAAATCTATTTGGGTTTCCTCCACATCCTCCATACAAAAATTGATCGCAAGTACCACGGGTTAAGTTGTAGAACCAGACATAACGCAATTGATTACAAGATCCCCAATCGGGTGGGAAGGAACAGATACCTGAAGTTCAACATTCTTCTGTACTTCTTTGATGGAAACACTCACGTGGATCATTACTATTCAATAGTCCCTTGCAAGTCTGTTCACAAGAGTTTTGAGTCGCAAATCGATTTCTATTCCCTCCGCATCCAGAATAAGTGAATGAAGTACACTTCTGAGCTCCGTATGTCCATCTCTGCAGCGGATAGGAACTCGAATTCTTTCCGCAGATTCCCTTGTCTCCCGGTGCTTCGAAGCACACTGTAATATTGGATTGACTATTTTCTATGTTTTTTCCCTTGTCTGATTYTCTGTTTTCTTGTATTGTCATATCACTTCAATCAGTCCATCAGAGAAACCATTTATTATAAAAGGGGTTGGACATAAAATACTTTCGTTAGTAGAAGCTCAATACGTGGATCAAACTGAAATGACAGACATACGAAAATCAGAAAAAGTAAGACAAAAGCGGACAAAAAACACACACACAACCGGGAAATTTTCTAAGATCAGATGGCAATAGAGATTCAAAAAGAAATGAGAAGAAAACGAATCAATTAAAGTTGTTGCACTCTAGCACGGATCTTTCGAATTCCAAACTTTGGCCTACCCTCGCTGCTTGCTCGAGTTTTCCGTTCCAATTCTCTGGGCTGATTGGATCGAGAACAAGTTCGCTGACAAATTTCGTACGAGTAGAAGTTATTCGCATTACCTCCACATCCCAGATACCACATTTGAGAACATTTTCCTGGAAAACAAAGCTTCGAATCATACCAGATTCAGTGATATTTTACCATAACTCCGATCGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTCTGAGCTCCGTATGTC</pcr_primer_p1>
		<pcr_primer_p2>ATCCACGTATTGAGCTTCTACTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTCTGAGCTCCGTATGTCCATCTCTGCAGCGGATAGGAACTCGAATTCTTTCCGCAGATTCCCTTGTCTCCCGGTGCTTCGAAGCACACTGTAATATTGGATTGACTATTTTCTATGTTTTTTCCCTTGTCTGATTTTCTGTTTTCTTGTATTGTCATATCACTTCAATCAGTCCATCAGAGAAACCATTTATTATAAAAGGGGTTGGACATAAAATACTTTCGTTAGTAGAAGCTCAATACGTGGAT</canonical_amplicon>
		<polymorphic_amplicon>ACTTCTGAGCTCCGTATGTCCATCTCTGCAGCGGATAGGAACTCGAATTCTTTCCGCAGATTCCCTTGTCTCCCGGTGCTTCGAAGCACACTGTAATATTGGATTGACTATTTTCTATGTTTTTTCCCTTGTCTGATTYTCTGTTTTCTTGTATTGTCATATCACTTCAATCAGTCCATCAGAGAAACCATTTATTATAAAAGGGGTTGGACATAAAATACTTTCGTTAGTAGAAGCTCAATACGTGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9775</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>531004</contig_pos>
        <strand>+</strand>
        <context>ATTATAAAAG[G/T]GGTTGGACAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGTCATATCACTTCAATCAGTCCATCAGAGAAACCATTTATTATAAAAG</left_flank>
        <right_flank>GGTTGGACATAAAATACTTTCGTTAGTAGAAGCTCAATACGTGGATCAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAAATTTCAAAAGTTTCAAATCTATTTGGGTTTCCTCCACATCCTCCATACAAAAATTGATCGCAAGTACCACGGGTTAAGTTGTAGAACCAGACATAACGCAATTGATTACAAGATCCCCAATCGGGTGGGAAGGAACAGATACCTGAAGTTCAACATTCTTCTGTACTTCTTTGATGGAAACACTCACGTGGATCATTACTATTCAATAGTCCCTTGCAAGTCTGTTCACAAGAGTTTTGAGTCGCAAATCGATTTCTATTCCCTCCGCATCCAGAATAAGTGAATGAAGTACACTTCTGAGCTCCGTATGTCCATCTCTGCAGCGGATAGGAACTCGAATTCTTTCCGCAGATTCCCTTGTCTCCCGGTGCTTCGAAGCACACTGTAATATTGGATTGACTATTTTCTATGTTTTTTCCCTTGTCTGATTTTCTGTTTTCTTGTATTGTCATATCACTTCAATCAGTCCATCAGAGAAACCATTTATTATAAAAGGGGTTGGACATAAAATACTTTCGTTAGTAGAAGCTCAATACGTGGATCAAACTGAAATGACAGACATACGAAAATCAGAAAAAGTAAGACAAAAGCGGACAAAAAACACACACACAACCGGGAAATTTTCTAAGATCAGATGGCAATAGAGATTCAAAAAGAAATGAGAAGAAAACGAATCAATTAAAGTTGTTGCACTCTAGCACGGATCTTTCGAATTCCAAACTTTGGCCTACCCTCGCTGCTTGCTCGAGTTTTCCGTTCCAATTCTCTGGGCTGATTGGATCGAGAACAAGTTCGCTGACAAATTTCGTACGAGTAGAAGTTATTCGCATTACCTCCACATCCCAGATACCACATTTGAGAACATTTTCCTGGAAAACAAAGCTTCGAATCATACCAGATTCAGTGATATTTTACCATAACTCCGATCGTAATAAAATCTGAATCCAGCTTGTGGCAAACAACTATCTTCGTTCTTTCCATATCCAATGTGCATGG</canonical>
            <polymorphic>GCAAATTTCAAAAGTTTCAAATCTATTTGGGTTTCCTCCACATCCTCCATACAAAAATTGATCGCAAGTACCACGGGTTAAGTTGTAGAACCAGACATAACGCAATTGATTACAAGATCCCCAATCGGGTGGGAAGGAACAGATACCTGAAGTTCAACATTCTTCTGTACTTCTTTGATGGAAACACTCACGTGGATCATTACTATTCAATAGTCCCTTGCAAGTCTGTTCACAAGAGTTTTGAGTCGCAAATCGATTTCTATTCCCTCCGCATCCAGAATAAGTGAATGAAGTACACTTCTGAGCTCCGTATGTCCATCTCTGCAGCGGATAGGAACTCGAATTCTTTCCGCAGATTCCCTTGTCTCCCGGTGCTTCGAAGCACACTGTAATATTGGATTGACTATTTTCTATGTTTTTTCCCTTGTCTGATTTTCTGTTTTCTTGTATTGTCATATCACTTCAATCAGTCCATCAGAGAAACCATTTATTATAAAAGKGGTTGGACATAAAATACTTTCGTTAGTAGAAGCTCAATACGTGGATCAAACTGAAATGACAGACATACGAAAATCAGAAAAAGTAAGACAAAAGCGGACAAAAAACACACACACAACCGGGAAATTTTCTAAGATCAGATGGCAATAGAGATTCAAAAAGAAATGAGAAGAAAACGAATCAATTAAAGTTGTTGCACTCTAGCACGGATCTTTCGAATTCCAAACTTTGGCCTACCCTCGCTGCTTGCTCGAGTTTTCCGTTCCAATTCTCTGGGCTGATTGGATCGAGAACAAGTTCGCTGACAAATTTCGTACGAGTAGAAGTTATTCGCATTACCTCCACATCCCAGATACCACATTTGAGAACATTTTCCTGGAAAACAAAGCTTCGAATCATACCAGATTCAGTGATATTTTACCATAACTCCGATCGTAATAAAATCTGAATCCAGCTTGTGGCAAACAACTATCTTCGTTCTTTCCATATCCAATGTGCATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATTGTCATATCACTTCAATCA</pcr_primer_p1>
		<pcr_primer_p2>ACAACTTTAATTGATTCGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGTATTGTCATATCACTTCAATCAGTCCATCAGAGAAACCATTTATTATAAAAGGGGTTGGACATAAAATACTTTCGTTAGTAGAAGCTCAATACGTGGATCAAACTGAAATGACAGACATACGAAAATCAGAAAAAGTAAGACAAAAGCGGACAAAAAACACACACACAACCGGGAAATTTTCTAAGATCAGATGGCAATAGAGATTCAAAAAGAAATGAGAAGAAAACGAATCAATTAAAGTTGT</canonical_amplicon>
		<polymorphic_amplicon>TGTATTGTCATATCACTTCAATCAGTCCATCAGAGAAACCATTTATTATAAAAGKGGTTGGACATAAAATACTTTCGTTAGTAGAAGCTCAATACGTGGATCAAACTGAAATGACAGACATACGAAAATCAGAAAAAGTAAGACAAAAGCGGACAAAAAACACACACACAACCGGGAAATTTTCTAAGATCAGATGGCAATAGAGATTCAAAAAGAAATGAGAAGAAAACGAATCAATTAAAGTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9776</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>533287</contig_pos>
        <strand>+</strand>
        <context>AAAACCAAAA[C/T]TTTTAGTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGTTGCAAATTTATGAGCGCAAGATGTCCGACAAGTCTGAAAACCAAAA</left_flank>
        <right_flank>TTTTAGTTTGATTATTACATTGTTACCGATTTCCAAATGCTTCTCACAAC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGATAGAGTCTCATTGAAGCTTTCCAAACATTCAGCTGAAATTTGATGTTCGATCAAATGTCCATCTTCTCAAAACTTCAAACCTGCAACAGTCACTGGATGGTCTACCATTTTTGAATACGCCAGATCTTCCCGTCCCTCATGATCTCGTTTGATGTCAGCTAGTTTCTGGTCGAGGTCCAGTTTGAAACGATGTTCCGGCGAGACGTGTGCCTTTATTTTCAGAATGATTGGACTTGATAATTTTGAGGCAGCGGGCACCAAATGCGCGGATCCCGAAACGAAAATTACCGTGTTAGATGAAGCAGAATCTGATGATGATGAAGATGAAGTTGACGACTCTTGGATTTCAGAAGATGACGAGATGACTTCTTTGGAATGATCTTCTGGATAGTCCTTGATAAAAAATGAACTTTATCAGAGAACCTACCGCCTGTCATAGGAAAATCAGTTGCAAATTTATGAGCGCAAGATGTCCGACAAGTCTGAAAACCAAAATTTTTAGTTTGATTATTACATTGTTACCGATTTCCAAATGCTTCTCACAACCCGAAACGATCACATTAAGCGTTTCATCCTTTCGTTCAATAATACCTCCTTATCAAACCAAATATTTCTGCTACTTGTATGACATCCTCCATACCAGAACGCCTTACAAGCTTTGGCTTTTGCATCGTAGTAACTTCTCACAACCCAAGAATCTCCTAAACAATCTTCATCCCACTTCGGATCATATTCGTCGTCACATGGATCATTAATGGATCGAGTAGTAGGTGTCTTATTAGTTGGTTCTGACTTCAGTGGTGTTGTCTGTTTCGTTTGTTCCATCCATGTGATAGTGGGTACTGTGGGTGGAGATTTATCAATGATTGTCACAACTTCTGGTTTTTGAAAGTCGTATTTGATGTAATCATTACTAGCCGATTCAATTCTTCTCACGAACTCCTCTGGTTTTGTGTACCCTGGATGTCCTCCAGACTTCATATCGTGAACAACCCT</canonical>
            <polymorphic>TCGATAGAGTCTCATTGAAGCTTTCCAAACATTCAGCTGAAATTTGATGTTCGATCAAATGTCCATCTTCTCAAAACTTCAAACCTGCAACAGTCACTGGATGGTCTACCATTTTTGAATACGCCAGATCTTCCCGTCCCTCATGATCTCGTTTGATGTCAGCTAGTTTCTGGTCGAGGTCCAGTTTGAAACGATGTTCCGGCGAGACGTGTGCCTTTATTTTCAGAATGATTGGACTTGATAATTTTGAGGCAGCGGGCACCAAATGCGCGGATCCCGAAACGAAAATTACCGTGTTAGATGAAGCAGAATCTGATGATGATGAAGATGAAGTTGACGACTCTTGGATTTCAGAAGATGACGAGATGACTTCTTTGGAATGATCTTCTGGATAGTCCTTGATAAAAAATGAACTTTATCAGAGAACCTACCGCCTGTCATAGGAAAATCAGTTGCAAATTTATGAGCGCAAGATGTCCGACAAGTCTGAAAACCAAAAYTTTTAGTTTGATTATTACATTGTTACCGATTTCCAAATGCTTCTCACAACCCGAAACGATCACATTAAGCGTTTCATCCTTTCGTTCAATAATACCTCCTTATCAAACCAAATATTTCTGCTACTTGTATGACATCCTCCATACCAGAACGCCTTACAAGCTTTGGCTTTTGCATCGTAGTAACTTCTCACAACCCAAGAATCTCCTAAACAATCTTCATCCCACTTCGGATCATATTCGTCGTCACATGGATCATTAATGGATCGAGTAGTAGGTGTCTTATTAGTTGGTTCTGACTTCAGTGGTGTTGTCTGTTTCGTTTGTTCCATCCATGTGATAGTGGGTACTGTGGGTGGAGATTTATCAATGATTGTCACAACTTCTGGTTTTTGAAAGTCGTATTTGATGTAATCATTACTAGCCGATTCAATTCTTCTCACGAACTCCTCTGGTTTTGTGTACCCTGGATGTCCTCCAGACTTCATATCGTGAACAACCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>503 417 40 40</canonical_bands>
                <polymorphic_bands>543 417 40</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>431 202 171 72 44 40 40</canonical_bands>
                <polymorphic_bands>471 202 171 72 44 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATCAGTTGCAAATTTATGAG</pcr_primer_p1>
		<pcr_primer_p2>GAGAAGTTACTACGATGCAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAAATCAGTTGCAAATTTATGAGCGCAAGATGTCCGACAAGTCTGAAAACCAAAATTTTTAGTTTGATTATTACATTGTTACCGATTTCCAAATGCTTCTCACAACCCGAAACGATCACATTAAGCGTTTCATCCTTTCGTTCAATAATACCTCCTTATCAAACCAAATATTTCTGCTACTTGTATGACATCCTCCATACCAGAACGCCTTACAAGCTTTGGCTTTTGCATCGTAGTAACTTCTC</canonical_amplicon>
		<polymorphic_amplicon>AAAATCAGTTGCAAATTTATGAGCGCAAGATGTCCGACAAGTCTGAAAACCAAAAYTTTTAGTTTGATTATTACATTGTTACCGATTTCCAAATGCTTCTCACAACCCGAAACGATCACATTAAGCGTTTCATCCTTTCGTTCAATAATACCTCCTTATCAAACCAAATATTTCTGCTACTTGTATGACATCCTCCATACCAGAACGCCTTACAAGCTTTGGCTTTTGCATCGTAGTAACTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9777</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>533161</contig_pos>
        <strand>+</strand>
        <context>AGATGACTTC[G/T]TTGGAATGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAGATGAAGTTGACGACTCTTGGATTTCAGAAGATGACGAGATGACTTC</left_flank>
        <right_flank>TTGGAATGATCTTCTGGATAGTCCTTGATAAAAAATGAACTTTATCAGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTACTCCAGAACATACGACAGGAGCGAGTGTCCTTATCATAGTAGTACCTGGAAAATGAATCTAAACTTTACAAAATTCTTTTTAAAAACCTATTGCTCCATGTCTTTCCATCACCACATGGCTTCGATAGAGTCTCATTGAAGCTTTCCAAACATTCAGCTGAAATTTGATGTTCGATCAAATGTCCATCTTCTCAAAACTTCAAACCTGCAACAGTCACTGGATGGTCTACCATTTTTGAATACGCCAGATCTTCCCGTCCCTCATGATCTCGTTTGATGTCAGCTAGTTTCTGGTCGAGGTCCAGTTTGAAACGATGTTCCGGCGAGACGTGTGCCTTTATTTTCAGAATGATTGGACTTGATAATTTTGAGGCAGCGGGCACCAAATGCGCGGATCCCGAAACGAAAATTACCGTGTTAGATGAAGCAGAATCTGATGATGATGAAGATGAAGTTGACGACTCTTGGATTTCAGAAGATGACGAGATGACTTCTTTGGAATGATCTTCTGGATAGTCCTTGATAAAAAATGAACTTTATCAGAGAACCTACCGCCTGTCATAGGAAAATCAGTTGCAAATTTATGAGCGCAAGATGTCCGACAAGTCTGAAAACCAAAATTTTTAGTTTGATTATTACATTGTTACCGATTTCCAAATGCTTCTCACAACCCGAAACGATCACATTAAGCGTTTCATCCTTTCGTTCAATAATACCTCCTTATCAAACCAAATATTTCTGCTACTTGTATGACATCCTCCATACCAGAACGCCTTACAAGCTTTGGCTTTTGCATCGTAGTAACTTCTCACAACCCAAGAATCTCCTAAACAATCTTCATCCCACTTCGGATCATATTCGTCGTCACATGGATCATTAATGGATCGAGTAGTAGGTGTCTTATTAGTTGGTTCTGACTTCAGTGGTGTTGTCTGTTTCGTTTGTTCCATCCATGTGATAGTGGGTACTGTGGGTGGAGATTTATCAATGATTGT</canonical>
            <polymorphic>CATTACTCCAGAACATACGACAGGAGCGAGTGTCCTTATCATAGTAGTACCTGGAAAATGAATCTAAACTTTACAAAATTCTTTTTAAAAACCTATTGCTCCATGTCTTTCCATCACCACATGGCTTCGATAGAGTCTCATTGAAGCTTTCCAAACATTCAGCTGAAATTTGATGTTCGATCAAATGTCCATCTTCTCAAAACTTCAAACCTGCAACAGTCACTGGATGGTCTACCATTTTTGAATACGCCAGATCTTCCCGTCCCTCATGATCTCGTTTGATGTCAGCTAGTTTCTGGTCGAGGTCCAGTTTGAAACGATGTTCCGGCGAGACGTGTGCCTTTATTTTCAGAATGATTGGACTTGATAATTTTGAGGCAGCGGGCACCAAATGCGCGGATCCCGAAACGAAAATTACCGTGTTAGATGAAGCAGAATCTGATGATGATGAAGATGAAGTTGACGACTCTTGGATTTCAGAAGATGACGAGATGACTTCKTTGGAATGATCTTCTGGATAGTCCTTGATAAAAAATGAACTTTATCAGAGAACCTACCGCCTGTCATAGGAAAATCAGTTGCAAATTTATGAGCGCAAGATGTCCGACAAGTCTGAAAACCAAAATTTTTAGTTTGATTATTACATTGTTACCGATTTCCAAATGCTTCTCACAACCCGAAACGATCACATTAAGCGTTTCATCCTTTCGTTCAATAATACCTCCTTATCAAACCAAATATTTCTGCTACTTGTATGACATCCTCCATACCAGAACGCCTTACAAGCTTTGGCTTTTGCATCGTAGTAACTTCTCACAACCCAAGAATCTCCTAAACAATCTTCATCCCACTTCGGATCATATTCGTCGTCACATGGATCATTAATGGATCGAGTAGTAGGTGTCTTATTAGTTGGTTCTGACTTCAGTGGTGTTGTCTGTTTCGTTTGTTCCATCCATGTGATAGTGGGTACTGTGGGTGGAGATTTATCAATGATTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTCAGAATGATTGGACTTG</pcr_primer_p1>
		<pcr_primer_p2>CTCATAAATTTGCAACTGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATTTTCAGAATGATTGGACTTGATAATTTTGAGGCAGCGGGCACCAAATGCGCGGATCCCGAAACGAAAATTACCGTGTTAGATGAAGCAGAATCTGATGATGATGAAGATGAAGTTGACGACTCTTGGATTTCAGAAGATGACGAGATGACTTCTTTGGAATGATCTTCTGGATAGTCCTTGATAAAAAATGAACTTTATCAGAGAACCTACCGCCTGTCATAGGAAAATCAGTTGCAAATTTATGAG</canonical_amplicon>
		<polymorphic_amplicon>TATTTTCAGAATGATTGGACTTGATAATTTTGAGGCAGCGGGCACCAAATGCGCGGATCCCGAAACGAAAATTACCGTGTTAGATGAAGCAGAATCTGATGATGATGAAGATGAAGTTGACGACTCTTGGATTTCAGAAGATGACGAGATGACTTCKTTGGAATGATCTTCTGGATAGTCCTTGATAAAAAATGAACTTTATCAGAGAACCTACCGCCTGTCATAGGAAAATCAGTTGCAAATTTATGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9778</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>533132</contig_pos>
        <strand>+</strand>
        <context>TGACGACTCT[G/T]GGATTTCAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTTAGATGAAGCAGAATCTGATGATGATGAAGATGAAGTTGACGACTCT</left_flank>
        <right_flank>GGATTTCAGAAGATGACGAGATGACTTCTTTGGAATGATCTTCTGGATAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGTTATTTTTTGAAGAACTAAAGCATCCATTACTCCAGAACATACGACAGGAGCGAGTGTCCTTATCATAGTAGTACCTGGAAAATGAATCTAAACTTTACAAAATTCTTTTTAAAAACCTATTGCTCCATGTCTTTCCATCACCACATGGCTTCGATAGAGTCTCATTGAAGCTTTCCAAACATTCAGCTGAAATTTGATGTTCGATCAAATGTCCATCTTCTCAAAACTTCAAACCTGCAACAGTCACTGGATGGTCTACCATTTTTGAATACGCCAGATCTTCCCGTCCCTCATGATCTCGTTTGATGTCAGCTAGTTTCTGGTCGAGGTCCAGTTTGAAACGATGTTCCGGCGAGACGTGTGCCTTTATTTTCAGAATGATTGGACTTGATAATTTTGAGGCAGCGGGCACCAAATGCGCGGATCCCGAAACGAAAATTACCGTGTTAGATGAAGCAGAATCTGATGATGATGAAGATGAAGTTGACGACTCTTGGATTTCAGAAGATGACGAGATGACTTCTTTGGAATGATCTTCTGGATAGTCCTTGATAAAAAATGAACTTTATCAGAGAACCTACCGCCTGTCATAGGAAAATCAGTTGCAAATTTATGAGCGCAAGATGTCCGACAAGTCTGAAAACCAAAATTTTTAGTTTGATTATTACATTGTTACCGATTTCCAAATGCTTCTCACAACCCGAAACGATCACATTAAGCGTTTCATCCTTTCGTTCAATAATACCTCCTTATCAAACCAAATATTTCTGCTACTTGTATGACATCCTCCATACCAGAACGCCTTACAAGCTTTGGCTTTTGCATCGTAGTAACTTCTCACAACCCAAGAATCTCCTAAACAATCTTCATCCCACTTCGGATCATATTCGTCGTCACATGGATCATTAATGGATCGAGTAGTAGGTGTCTTATTAGTTGGTTCTGACTTCAGTGGTGTTGTCTGTTTCGTTTGTTCCATCCATGTGATAGTGGGT</canonical>
            <polymorphic>GAAGTTATTTTTTGAAGAACTAAAGCATCCATTACTCCAGAACATACGACAGGAGCGAGTGTCCTTATCATAGTAGTACCTGGAAAATGAATCTAAACTTTACAAAATTCTTTTTAAAAACCTATTGCTCCATGTCTTTCCATCACCACATGGCTTCGATAGAGTCTCATTGAAGCTTTCCAAACATTCAGCTGAAATTTGATGTTCGATCAAATGTCCATCTTCTCAAAACTTCAAACCTGCAACAGTCACTGGATGGTCTACCATTTTTGAATACGCCAGATCTTCCCGTCCCTCATGATCTCGTTTGATGTCAGCTAGTTTCTGGTCGAGGTCCAGTTTGAAACGATGTTCCGGCGAGACGTGTGCCTTTATTTTCAGAATGATTGGACTTGATAATTTTGAGGCAGCGGGCACCAAATGCGCGGATCCCGAAACGAAAATTACCGTGTTAGATGAAGCAGAATCTGATGATGATGAAGATGAAGTTGACGACTCTKGGATTTCAGAAGATGACGAGATGACTTCTTTGGAATGATCTTCTGGATAGTCCTTGATAAAAAATGAACTTTATCAGAGAACCTACCGCCTGTCATAGGAAAATCAGTTGCAAATTTATGAGCGCAAGATGTCCGACAAGTCTGAAAACCAAAATTTTTAGTTTGATTATTACATTGTTACCGATTTCCAAATGCTTCTCACAACCCGAAACGATCACATTAAGCGTTTCATCCTTTCGTTCAATAATACCTCCTTATCAAACCAAATATTTCTGCTACTTGTATGACATCCTCCATACCAGAACGCCTTACAAGCTTTGGCTTTTGCATCGTAGTAACTTCTCACAACCCAAGAATCTCCTAAACAATCTTCATCCCACTTCGGATCATATTCGTCGTCACATGGATCATTAATGGATCGAGTAGTAGGTGTCTTATTAGTTGGTTCTGACTTCAGTGGTGTTGTCTGTTTCGTTTGTTCCATCCATGTGATAGTGGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTCAGAATGATTGGACTTG</pcr_primer_p1>
		<pcr_primer_p2>CTCATAAATTTGCAACTGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATTTTCAGAATGATTGGACTTGATAATTTTGAGGCAGCGGGCACCAAATGCGCGGATCCCGAAACGAAAATTACCGTGTTAGATGAAGCAGAATCTGATGATGATGAAGATGAAGTTGACGACTCTTGGATTTCAGAAGATGACGAGATGACTTCTTTGGAATGATCTTCTGGATAGTCCTTGATAAAAAATGAACTTTATCAGAGAACCTACCGCCTGTCATAGGAAAATCAGTTGCAAATTTATGAG</canonical_amplicon>
		<polymorphic_amplicon>TATTTTCAGAATGATTGGACTTGATAATTTTGAGGCAGCGGGCACCAAATGCGCGGATCCCGAAACGAAAATTACCGTGTTAGATGAAGCAGAATCTGATGATGATGAAGATGAAGTTGACGACTCTKGGATTTCAGAAGATGACGAGATGACTTCTTTGGAATGATCTTCTGGATAGTCCTTGATAAAAAATGAACTTTATCAGAGAACCTACCGCCTGTCATAGGAAAATCAGTTGCAAATTTATGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9779</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>533120</contig_pos>
        <strand>+</strand>
        <context>TGAAGATGAA[G/T]TTGACGACTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGAAAATTACCGTGTTAGATGAAGCAGAATCTGATGATGATGAAGATGAA</left_flank>
        <right_flank>TTGACGACTCTTGGATTTCAGAAGATGACGAGATGACTTCTTTGGAATGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCTGATCATCGAAGTTATTTTTTGAAGAACTAAAGCATCCATTACTCCAGAACATACGACAGGAGCGAGTGTCCTTATCATAGTAGTACCTGGAAAATGAATCTAAACTTTACAAAATTCTTTTTAAAAACCTATTGCTCCATGTCTTTCCATCACCACATGGCTTCGATAGAGTCTCATTGAAGCTTTCCAAACATTCAGCTGAAATTTGATGTTCGATCAAATGTCCATCTTCTCAAAACTTCAAACCTGCAACAGTCACTGGATGGTCTACCATTTTTGAATACGCCAGATCTTCCCGTCCCTCATGATCTCGTTTGATGTCAGCTAGTTTCTGGTCGAGGTCCAGTTTGAAACGATGTTCCGGCGAGACGTGTGCCTTTATTTTCAGAATGATTGGACTTGATAATTTTGAGGCAGCGGGCACCAAATGCGCGGATCCCGAAACGAAAATTACCGTGTTAGATGAAGCAGAATCTGATGATGATGAAGATGAAGTTGACGACTCTTGGATTTCAGAAGATGACGAGATGACTTCTTTGGAATGATCTTCTGGATAGTCCTTGATAAAAAATGAACTTTATCAGAGAACCTACCGCCTGTCATAGGAAAATCAGTTGCAAATTTATGAGCGCAAGATGTCCGACAAGTCTGAAAACCAAAATTTTTAGTTTGATTATTACATTGTTACCGATTTCCAAATGCTTCTCACAACCCGAAACGATCACATTAAGCGTTTCATCCTTTCGTTCAATAATACCTCCTTATCAAACCAAATATTTCTGCTACTTGTATGACATCCTCCATACCAGAACGCCTTACAAGCTTTGGCTTTTGCATCGTAGTAACTTCTCACAACCCAAGAATCTCCTAAACAATCTTCATCCCACTTCGGATCATATTCGTCGTCACATGGATCATTAATGGATCGAGTAGTAGGTGTCTTATTAGTTGGTTCTGACTTCAGTGGTGTTGTCTGTTTCGTTTGTTCCATCCAT</canonical>
            <polymorphic>TTCCTGATCATCGAAGTTATTTTTTGAAGAACTAAAGCATCCATTACTCCAGAACATACGACAGGAGCGAGTGTCCTTATCATAGTAGTACCTGGAAAATGAATCTAAACTTTACAAAATTCTTTTTAAAAACCTATTGCTCCATGTCTTTCCATCACCACATGGCTTCGATAGAGTCTCATTGAAGCTTTCCAAACATTCAGCTGAAATTTGATGTTCGATCAAATGTCCATCTTCTCAAAACTTCAAACCTGCAACAGTCACTGGATGGTCTACCATTTTTGAATACGCCAGATCTTCCCGTCCCTCATGATCTCGTTTGATGTCAGCTAGTTTCTGGTCGAGGTCCAGTTTGAAACGATGTTCCGGCGAGACGTGTGCCTTTATTTTCAGAATGATTGGACTTGATAATTTTGAGGCAGCGGGCACCAAATGCGCGGATCCCGAAACGAAAATTACCGTGTTAGATGAAGCAGAATCTGATGATGATGAAGATGAAKTTGACGACTCTTGGATTTCAGAAGATGACGAGATGACTTCTTTGGAATGATCTTCTGGATAGTCCTTGATAAAAAATGAACTTTATCAGAGAACCTACCGCCTGTCATAGGAAAATCAGTTGCAAATTTATGAGCGCAAGATGTCCGACAAGTCTGAAAACCAAAATTTTTAGTTTGATTATTACATTGTTACCGATTTCCAAATGCTTCTCACAACCCGAAACGATCACATTAAGCGTTTCATCCTTTCGTTCAATAATACCTCCTTATCAAACCAAATATTTCTGCTACTTGTATGACATCCTCCATACCAGAACGCCTTACAAGCTTTGGCTTTTGCATCGTAGTAACTTCTCACAACCCAAGAATCTCCTAAACAATCTTCATCCCACTTCGGATCATATTCGTCGTCACATGGATCATTAATGGATCGAGTAGTAGGTGTCTTATTAGTTGGTTCTGACTTCAGTGGTGTTGTCTGTTTCGTTTGTTCCATCCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 273 229</canonical_bands>
                <polymorphic_bands>727 273</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTTTCAGAATGATTGGACTTG</pcr_primer_p1>
		<pcr_primer_p2>CTCATAAATTTGCAACTGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATTTTCAGAATGATTGGACTTGATAATTTTGAGGCAGCGGGCACCAAATGCGCGGATCCCGAAACGAAAATTACCGTGTTAGATGAAGCAGAATCTGATGATGATGAAGATGAAGTTGACGACTCTTGGATTTCAGAAGATGACGAGATGACTTCTTTGGAATGATCTTCTGGATAGTCCTTGATAAAAAATGAACTTTATCAGAGAACCTACCGCCTGTCATAGGAAAATCAGTTGCAAATTTATGAG</canonical_amplicon>
		<polymorphic_amplicon>TATTTTCAGAATGATTGGACTTGATAATTTTGAGGCAGCGGGCACCAAATGCGCGGATCCCGAAACGAAAATTACCGTGTTAGATGAAGCAGAATCTGATGATGATGAAGATGAAKTTGACGACTCTTGGATTTCAGAAGATGACGAGATGACTTCTTTGGAATGATCTTCTGGATAGTCCTTGATAAAAAATGAACTTTATCAGAGAACCTACCGCCTGTCATAGGAAAATCAGTTGCAAATTTATGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9780</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>533108</contig_pos>
        <strand>+</strand>
        <context>ATCTGATGAT[A/G]ATGAAGATGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGATCCCGAAACGAAAATTACCGTGTTAGATGAAGCAGAATCTGATGAT</left_flank>
        <right_flank>ATGAAGATGAAGTTGACGACTCTTGGATTTCAGAAGATGACGAGATGACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATTGGCACGTTTCCTGATCATCGAAGTTATTTTTTGAAGAACTAAAGCATCCATTACTCCAGAACATACGACAGGAGCGAGTGTCCTTATCATAGTAGTACCTGGAAAATGAATCTAAACTTTACAAAATTCTTTTTAAAAACCTATTGCTCCATGTCTTTCCATCACCACATGGCTTCGATAGAGTCTCATTGAAGCTTTCCAAACATTCAGCTGAAATTTGATGTTCGATCAAATGTCCATCTTCTCAAAACTTCAAACCTGCAACAGTCACTGGATGGTCTACCATTTTTGAATACGCCAGATCTTCCCGTCCCTCATGATCTCGTTTGATGTCAGCTAGTTTCTGGTCGAGGTCCAGTTTGAAACGATGTTCCGGCGAGACGTGTGCCTTTATTTTCAGAATGATTGGACTTGATAATTTTGAGGCAGCGGGCACCAAATGCGCGGATCCCGAAACGAAAATTACCGTGTTAGATGAAGCAGAATCTGATGATGATGAAGATGAAGTTGACGACTCTTGGATTTCAGAAGATGACGAGATGACTTCTTTGGAATGATCTTCTGGATAGTCCTTGATAAAAAATGAACTTTATCAGAGAACCTACCGCCTGTCATAGGAAAATCAGTTGCAAATTTATGAGCGCAAGATGTCCGACAAGTCTGAAAACCAAAATTTTTAGTTTGATTATTACATTGTTACCGATTTCCAAATGCTTCTCACAACCCGAAACGATCACATTAAGCGTTTCATCCTTTCGTTCAATAATACCTCCTTATCAAACCAAATATTTCTGCTACTTGTATGACATCCTCCATACCAGAACGCCTTACAAGCTTTGGCTTTTGCATCGTAGTAACTTCTCACAACCCAAGAATCTCCTAAACAATCTTCATCCCACTTCGGATCATATTCGTCGTCACATGGATCATTAATGGATCGAGTAGTAGGTGTCTTATTAGTTGGTTCTGACTTCAGTGGTGTTGTCTGTTTCGTT</canonical>
            <polymorphic>CCATTGGCACGTTTCCTGATCATCGAAGTTATTTTTTGAAGAACTAAAGCATCCATTACTCCAGAACATACGACAGGAGCGAGTGTCCTTATCATAGTAGTACCTGGAAAATGAATCTAAACTTTACAAAATTCTTTTTAAAAACCTATTGCTCCATGTCTTTCCATCACCACATGGCTTCGATAGAGTCTCATTGAAGCTTTCCAAACATTCAGCTGAAATTTGATGTTCGATCAAATGTCCATCTTCTCAAAACTTCAAACCTGCAACAGTCACTGGATGGTCTACCATTTTTGAATACGCCAGATCTTCCCGTCCCTCATGATCTCGTTTGATGTCAGCTAGTTTCTGGTCGAGGTCCAGTTTGAAACGATGTTCCGGCGAGACGTGTGCCTTTATTTTCAGAATGATTGGACTTGATAATTTTGAGGCAGCGGGCACCAAATGCGCGGATCCCGAAACGAAAATTACCGTGTTAGATGAAGCAGAATCTGATGATRATGAAGATGAAGTTGACGACTCTTGGATTTCAGAAGATGACGAGATGACTTCTTTGGAATGATCTTCTGGATAGTCCTTGATAAAAAATGAACTTTATCAGAGAACCTACCGCCTGTCATAGGAAAATCAGTTGCAAATTTATGAGCGCAAGATGTCCGACAAGTCTGAAAACCAAAATTTTTAGTTTGATTATTACATTGTTACCGATTTCCAAATGCTTCTCACAACCCGAAACGATCACATTAAGCGTTTCATCCTTTCGTTCAATAATACCTCCTTATCAAACCAAATATTTCTGCTACTTGTATGACATCCTCCATACCAGAACGCCTTACAAGCTTTGGCTTTTGCATCGTAGTAACTTCTCACAACCCAAGAATCTCCTAAACAATCTTCATCCCACTTCGGATCATATTCGTCGTCACATGGATCATTAATGGATCGAGTAGTAGGTGTCTTATTAGTTGGTTCTGACTTCAGTGGTGTTGTCTGTTTCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTCAGAATGATTGGACTTG</pcr_primer_p1>
		<pcr_primer_p2>CTCATAAATTTGCAACTGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATTTTCAGAATGATTGGACTTGATAATTTTGAGGCAGCGGGCACCAAATGCGCGGATCCCGAAACGAAAATTACCGTGTTAGATGAAGCAGAATCTGATGATGATGAAGATGAAGTTGACGACTCTTGGATTTCAGAAGATGACGAGATGACTTCTTTGGAATGATCTTCTGGATAGTCCTTGATAAAAAATGAACTTTATCAGAGAACCTACCGCCTGTCATAGGAAAATCAGTTGCAAATTTATGAG</canonical_amplicon>
		<polymorphic_amplicon>TATTTTCAGAATGATTGGACTTGATAATTTTGAGGCAGCGGGCACCAAATGCGCGGATCCCGAAACGAAAATTACCGTGTTAGATGAAGCAGAATCTGATGATRATGAAGATGAAGTTGACGACTCTTGGATTTCAGAAGATGACGAGATGACTTCTTTGGAATGATCTTCTGGATAGTCCTTGATAAAAAATGAACTTTATCAGAGAACCTACCGCCTGTCATAGGAAAATCAGTTGCAAATTTATGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9781</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>532957</contig_pos>
        <strand>+</strand>
        <context>CAGCTAGTTT[C/T]TGGTCGAGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACGCCAGATCTTCCCGTCCCTCATGATCTCGTTTGATGTCAGCTAGTTT</left_flank>
        <right_flank>TGGTCGAGGTCCAGTTTGAAACGATGTTCCGGCGAGACGTGTGCCTTTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAAGCGGTTTGTGAACTCTCCATGTCTACAATCTTCCAAATATCTCTCGTCGAATTTATCCAGACAAGATTCTGAAAGTGTTTCTTGTTTGTGTTTTTTTCCAGTTTAATCTTACTTCCAGCTGGTTGTGGATGTCTTCCTTCACACTTCCATTGGCACGTTTCCTGATCATCGAAGTTATTTTTTGAAGAACTAAAGCATCCATTACTCCAGAACATACGACAGGAGCGAGTGTCCTTATCATAGTAGTACCTGGAAAATGAATCTAAACTTTACAAAATTCTTTTTAAAAACCTATTGCTCCATGTCTTTCCATCACCACATGGCTTCGATAGAGTCTCATTGAAGCTTTCCAAACATTCAGCTGAAATTTGATGTTCGATCAAATGTCCATCTTCTCAAAACTTCAAACCTGCAACAGTCACTGGATGGTCTACCATTTTTGAATACGCCAGATCTTCCCGTCCCTCATGATCTCGTTTGATGTCAGCTAGTTTCTGGTCGAGGTCCAGTTTGAAACGATGTTCCGGCGAGACGTGTGCCTTTATTTTCAGAATGATTGGACTTGATAATTTTGAGGCAGCGGGCACCAAATGCGCGGATCCCGAAACGAAAATTACCGTGTTAGATGAAGCAGAATCTGATGATGATGAAGATGAAGTTGACGACTCTTGGATTTCAGAAGATGACGAGATGACTTCTTTGGAATGATCTTCTGGATAGTCCTTGATAAAAAATGAACTTTATCAGAGAACCTACCGCCTGTCATAGGAAAATCAGTTGCAAATTTATGAGCGCAAGATGTCCGACAAGTCTGAAAACCAAAATTTTTAGTTTGATTATTACATTGTTACCGATTTCCAAATGCTTCTCACAACCCGAAACGATCACATTAAGCGTTTCATCCTTTCGTTCAATAATACCTCCTTATCAAACCAAATATTTCTGCTACTTGTATGACATCCTCCATACCAGAACGCCTTACAAGCTTTGGCTTT</canonical>
            <polymorphic>TAGAAGCGGTTTGTGAACTCTCCATGTCTACAATCTTCCAAATATCTCTCGTCGAATTTATCCAGACAAGATTCTGAAAGTGTTTCTTGTTTGTGTTTTTTTCCAGTTTAATCTTACTTCCAGCTGGTTGTGGATGTCTTCCTTCACACTTCCATTGGCACGTTTCCTGATCATCGAAGTTATTTTTTGAAGAACTAAAGCATCCATTACTCCAGAACATACGACAGGAGCGAGTGTCCTTATCATAGTAGTACCTGGAAAATGAATCTAAACTTTACAAAATTCTTTTTAAAAACCTATTGCTCCATGTCTTTCCATCACCACATGGCTTCGATAGAGTCTCATTGAAGCTTTCCAAACATTCAGCTGAAATTTGATGTTCGATCAAATGTCCATCTTCTCAAAACTTCAAACCTGCAACAGTCACTGGATGGTCTACCATTTTTGAATACGCCAGATCTTCCCGTCCCTCATGATCTCGTTTGATGTCAGCTAGTTTYTGGTCGAGGTCCAGTTTGAAACGATGTTCCGGCGAGACGTGTGCCTTTATTTTCAGAATGATTGGACTTGATAATTTTGAGGCAGCGGGCACCAAATGCGCGGATCCCGAAACGAAAATTACCGTGTTAGATGAAGCAGAATCTGATGATGATGAAGATGAAGTTGACGACTCTTGGATTTCAGAAGATGACGAGATGACTTCTTTGGAATGATCTTCTGGATAGTCCTTGATAAAAAATGAACTTTATCAGAGAACCTACCGCCTGTCATAGGAAAATCAGTTGCAAATTTATGAGCGCAAGATGTCCGACAAGTCTGAAAACCAAAATTTTTAGTTTGATTATTACATTGTTACCGATTTCCAAATGCTTCTCACAACCCGAAACGATCACATTAAGCGTTTCATCCTTTCGTTCAATAATACCTCCTTATCAAACCAAATATTTCTGCTACTTGTATGACATCCTCCATACCAGAACGCCTTACAAGCTTTGGCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGTCCATCTTCTCAAAACTT</pcr_primer_p1>
		<pcr_primer_p2>CTTCATCTAACACGGTAATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATGTCCATCTTCTCAAAACTTCAAACCTGCAACAGTCACTGGATGGTCTACCATTTTTGAATACGCCAGATCTTCCCGTCCCTCATGATCTCGTTTGATGTCAGCTAGTTTCTGGTCGAGGTCCAGTTTGAAACGATGTTCCGGCGAGACGTGTGCCTTTATTTTCAGAATGATTGGACTTGATAATTTTGAGGCAGCGGGCACCAAATGCGCGGATCCCGAAACGAAAATTACCGTGTTAGATGAAG</canonical_amplicon>
		<polymorphic_amplicon>AAATGTCCATCTTCTCAAAACTTCAAACCTGCAACAGTCACTGGATGGTCTACCATTTTTGAATACGCCAGATCTTCCCGTCCCTCATGATCTCGTTTGATGTCAGCTAGTTTYTGGTCGAGGTCCAGTTTGAAACGATGTTCCGGCGAGACGTGTGCCTTTATTTTCAGAATGATTGGACTTGATAATTTTGAGGCAGCGGGCACCAAATGCGCGGATCCCGAAACGAAAATTACCGTGTTAGATGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9782</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>533512</contig_pos>
        <strand>+</strand>
        <context>CTTCATCCCA[C/T]TTCGGATCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGTAGTAACTTCTCACAACCCAAGAATCTCCTAAACAATCTTCATCCCA</left_flank>
        <right_flank>TTCGGATCATATTCGTCGTCACATGGATCATTAATGGATCGAGTAGTAGG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATGATTGGACTTGATAATTTTGAGGCAGCGGGCACCAAATGCGCGGATCCCGAAACGAAAATTACCGTGTTAGATGAAGCAGAATCTGATGATGATGAAGATGAAGTTGACGACTCTTGGATTTCAGAAGATGACGAGATGACTTCTTTGGAATGATCTTCTGGATAGTCCTTGATAAAAAATGAACTTTATCAGAGAACCTACCGCCTGTCATAGGAAAATCAGTTGCAAATTTATGAGCGCAAGATGTCCGACAAGTCTGAAAACCAAAATTTTTAGTTTGATTATTACATTGTTACCGATTTCCAAATGCTTCTCACAACCCGAAACGATCACATTAAGCGTTTCATCCTTTCGTTCAATAATACCTCCTTATCAAACCAAATATTTCTGCTACTTGTATGACATCCTCCATACCAGAACGCCTTACAAGCTTTGGCTTTTGCATCGTAGTAACTTCTCACAACCCAAGAATCTCCTAAACAATCTTCATCCCACTTCGGATCATATTCGTCGTCACATGGATCATTAATGGATCGAGTAGTAGGTGTCTTATTAGTTGGTTCTGACTTCAGTGGTGTTGTCTGTTTCGTTTGTTCCATCCATGTGATAGTGGGTACTGTGGGTGGAGATTTATCAATGATTGTCACAACTTCTGGTTTTTGAAAGTCGTATTTGATGTAATCATTACTAGCCGATTCAATTCTTCTCACGAACTCCTCTGGTTTTGTGTACCCTGGATGTCCTCCAGACTTCATATCGTGAACAACCCTATCAATGTGACTATAAAACGCCGGTTCGATTTCCGCTTTATCTCCTTCTGATACATTCACAATGTTCCCAGCAGTTGGAAGGGGTCCCTTTGTTTTGAATGATGGTGTCGGAAGAAGGCGGAGAAGTCGTTGCTCTTCTAAGCGCTGGAAATTTCCATCTAATTCGACGACTTTTCTATGCTTTTGTTCGGGGAAAAGATCTTCAGAATGAGGATAAGTGAGTTT</canonical>
            <polymorphic>GAATGATTGGACTTGATAATTTTGAGGCAGCGGGCACCAAATGCGCGGATCCCGAAACGAAAATTACCGTGTTAGATGAAGCAGAATCTGATGATGATGAAGATGAAGTTGACGACTCTTGGATTTCAGAAGATGACGAGATGACTTCTTTGGAATGATCTTCTGGATAGTCCTTGATAAAAAATGAACTTTATCAGAGAACCTACCGCCTGTCATAGGAAAATCAGTTGCAAATTTATGAGCGCAAGATGTCCGACAAGTCTGAAAACCAAAATTTTTAGTTTGATTATTACATTGTTACCGATTTCCAAATGCTTCTCACAACCCGAAACGATCACATTAAGCGTTTCATCCTTTCGTTCAATAATACCTCCTTATCAAACCAAATATTTCTGCTACTTGTATGACATCCTCCATACCAGAACGCCTTACAAGCTTTGGCTTTTGCATCGTAGTAACTTCTCACAACCCAAGAATCTCCTAAACAATCTTCATCCCAYTTCGGATCATATTCGTCGTCACATGGATCATTAATGGATCGAGTAGTAGGTGTCTTATTAGTTGGTTCTGACTTCAGTGGTGTTGTCTGTTTCGTTTGTTCCATCCATGTGATAGTGGGTACTGTGGGTGGAGATTTATCAATGATTGTCACAACTTCTGGTTTTTGAAAGTCGTATTTGATGTAATCATTACTAGCCGATTCAATTCTTCTCACGAACTCCTCTGGTTTTGTGTACCCTGGATGTCCTCCAGACTTCATATCGTGAACAACCCTATCAATGTGACTATAAAACGCCGGTTCGATTTCCGCTTTATCTCCTTCTGATACATTCACAATGTTCCCAGCAGTTGGAAGGGGTCCCTTTGTTTTGAATGATGGTGTCGGAAGAAGGCGGAGAAGTCGTTGCTCTTCTAAGCGCTGGAAATTTCCATCTAATTCGACGACTTTTCTATGCTTTTGTTCGGGGAAAAGATCTTCAGAATGAGGATAAGTGAGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>250 128 113 63 50 48 36 35 34 32 31 29 27 22 21 20 18 16 9 6 5 4 3</canonical_bands>
                <polymorphic_bands>250 128 113 63 56 50 48 36 35 32 31 29 27 21 20 18 16 9 6 5 4 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTTGCATCGTAGTAACTTCTC</pcr_primer_p1>
		<pcr_primer_p2>GATTACATCAAATACGACTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTTTTGCATCGTAGTAACTTCTCACAACCCAAGAATCTCCTAAACAATCTTCATCCCACTTCGGATCATATTCGTCGTCACATGGATCATTAATGGATCGAGTAGTAGGTGTCTTATTAGTTGGTTCTGACTTCAGTGGTGTTGTCTGTTTCGTTTGTTCCATCCATGTGATAGTGGGTACTGTGGGTGGAGATTTATCAATGATTGTCACAACTTCTGGTTTTTGAAAGTCGTATTTGATGTAATC</canonical_amplicon>
		<polymorphic_amplicon>CTTTTGCATCGTAGTAACTTCTCACAACCCAAGAATCTCCTAAACAATCTTCATCCCAYTTCGGATCATATTCGTCGTCACATGGATCATTAATGGATCGAGTAGTAGGTGTCTTATTAGTTGGTTCTGACTTCAGTGGTGTTGTCTGTTTCGTTTGTTCCATCCATGTGATAGTGGGTACTGTGGGTGGAGATTTATCAATGATTGTCACAACTTCTGGTTTTTGAAAGTCGTATTTGATGTAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9784</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>535059</contig_pos>
        <strand>+</strand>
        <context>GTCCTCATAA[C/T]TTTTGAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGCAGTCTCTCCAATCTTTTTGACACACTTGTTGTTACAGTCCTCATAA</left_flank>
        <right_flank>TTTTGAAAATATTTTTCTTCTCAAAATCTGGCTCTCCACATGAAGAATCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAAGTTTCTTCTAAAAAATTGAAATTAGCAAGCTCCTTTTTGGGAATCCCACCCTAAACTCAGCCATGTATTTCAGTCTGTCAAACTTTGTAGTTGCCGTAACTTCTGATTTGATTGCAAAGTTTACAAACGTCTTCTCATGGTTTGGTGGGAACTTTTCAGGAAGTTCTGATGACTCATCTGGCTTGAGAGCTTCTACAAAAGTTCATATGTATAAATTTCTAGTTCAATTCGTAAAAAATAACTGACTATTCAGAATCAAATTCAATGGATCGGTTTGTTTGTAGTTTGGTCGTTTGGTCTCTTCTAGGAGAACAGAAGAAGTTGTTGGAGAAGCCGTCGTAGTTGTCGTCGTCGTTGTTGATGTTGTAGTTGTAGCTGTTGTAGTTGTTGCAATTTCTGAACATTTACATTTCAGAGGAGAGCTAACATCAATTGTCCTACTTTTAGCAGTCTCTCCAATCTTTTTGACACACTTGTTGTTACAGTCCTCATAATTTTTGAAAATATTTTTCTTCTCAAAATCTGGCTCTCCACATGAAGAATCATACCAAAAAGCTTCACACTCCTATAAATCTCAAGATTTTGTTCGAAGAACTTAAATAATCCTAGATACCTTAAACTGCTCATTCCAATAGAAAAGCTCATTCCAGTCAGCTGACGTACACTCATTCCGAAGATCAGCATCATATTCCAAATCGCATGTTGTGGGAGCTGCTAAAACTTTTTCAACGGGTTCTTCTTTTTTAAGCTCTTCCAAAATACTGTGTTCTATTTCTTCTTTTTTAGTAGCCTCGGTTGTCTCTTCTTGTTTGGGGATGATCTTTTTAAGCTCTTCTGTTTCTACTTTTTTAGCGTTTTGTTTTAAAAACTCGTTCGGGTTAAAACCGTTGTGATGTTGTTTGCTTTGGTCTTCGTCCTTTTCCGTGCTCAGGACGTCTTCTAGATAATTTTGAGGTTTGACTTTGAAAAAGAAACTGTGTTCATCCTCCGGTGAC</canonical>
            <polymorphic>GAGAAGTTTCTTCTAAAAAATTGAAATTAGCAAGCTCCTTTTTGGGAATCCCACCCTAAACTCAGCCATGTATTTCAGTCTGTCAAACTTTGTAGTTGCCGTAACTTCTGATTTGATTGCAAAGTTTACAAACGTCTTCTCATGGTTTGGTGGGAACTTTTCAGGAAGTTCTGATGACTCATCTGGCTTGAGAGCTTCTACAAAAGTTCATATGTATAAATTTCTAGTTCAATTCGTAAAAAATAACTGACTATTCAGAATCAAATTCAATGGATCGGTTTGTTTGTAGTTTGGTCGTTTGGTCTCTTCTAGGAGAACAGAAGAAGTTGTTGGAGAAGCCGTCGTAGTTGTCGTCGTCGTTGTTGATGTTGTAGTTGTAGCTGTTGTAGTTGTTGCAATTTCTGAACATTTACATTTCAGAGGAGAGCTAACATCAATTGTCCTACTTTTAGCAGTCTCTCCAATCTTTTTGACACACTTGTTGTTACAGTCCTCATAAYTTTTGAAAATATTTTTCTTCTCAAAATCTGGCTCTCCACATGAAGAATCATACCAAAAAGCTTCACACTCCTATAAATCTCAAGATTTTGTTCGAAGAACTTAAATAATCCTAGATACCTTAAACTGCTCATTCCAATAGAAAAGCTCATTCCAGTCAGCTGACGTACACTCATTCCGAAGATCAGCATCATATTCCAAATCGCATGTTGTGGGAGCTGCTAAAACTTTTTCAACGGGTTCTTCTTTTTTAAGCTCTTCCAAAATACTGTGTTCTATTTCTTCTTTTTTAGTAGCCTCGGTTGTCTCTTCTTGTTTGGGGATGATCTTTTTAAGCTCTTCTGTTTCTACTTTTTTAGCGTTTTGTTTTAAAAACTCGTTCGGGTTAAAACCGTTGTGATGTTGTTTGCTTTGGTCTTCGTCCTTTTCCGTGCTCAGGACGTCTTCTAGATAATTTTGAGGTTTGACTTTGAAAAAGAAACTGTGTTCATCCTCCGGTGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>453 194 133 62 50 39 33 18 12 6</canonical_bands>
                <polymorphic_bands>515 194 133 50 39 33 18 12 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACATTTCAGAGGAGAGCTAAC</pcr_primer_p1>
		<pcr_primer_p2>ACTGGAATGAGCTTTTCTATTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTACATTTCAGAGGAGAGCTAACATCAATTGTCCTACTTTTAGCAGTCTCTCCAATCTTTTTGACACACTTGTTGTTACAGTCCTCATAATTTTTGAAAATATTTTTCTTCTCAAAATCTGGCTCTCCACATGAAGAATCATACCAAAAAGCTTCACACTCCTATAAATCTCAAGATTTTGTTCGAAGAACTTAAATAATCCTAGATACCTTAAACTGCTCATTCCAATAGAAAAGCTCATTCCAGT</canonical_amplicon>
		<polymorphic_amplicon>TTACATTTCAGAGGAGAGCTAACATCAATTGTCCTACTTTTAGCAGTCTCTCCAATCTTTTTGACACACTTGTTGTTACAGTCCTCATAAYTTTTGAAAATATTTTTCTTCTCAAAATCTGGCTCTCCACATGAAGAATCATACCAAAAAGCTTCACACTCCTATAAATCTCAAGATTTTGTTCGAAGAACTTAAATAATCCTAGATACCTTAAACTGCTCATTCCAATAGAAAAGCTCATTCCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9785</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>535241</contig_pos>
        <strand>+</strand>
        <context>CATTCCGAAG[A/T]TCAGCATCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCCAATAGAAAAGCTCATTCCAGTCAGCTGACGTACACTCATTCCGAAG</left_flank>
        <right_flank>TCAGCATCATATTCCAAATCGCATGTTGTGGGAGCTGCTAAAACTTTTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGGCTTGAGAGCTTCTACAAAAGTTCATATGTATAAATTTCTAGTTCAATTCGTAAAAAATAACTGACTATTCAGAATCAAATTCAATGGATCGGTTTGTTTGTAGTTTGGTCGTTTGGTCTCTTCTAGGAGAACAGAAGAAGTTGTTGGAGAAGCCGTCGTAGTTGTCGTCGTCGTTGTTGATGTTGTAGTTGTAGCTGTTGTAGTTGTTGCAATTTCTGAACATTTACATTTCAGAGGAGAGCTAACATCAATTGTCCTACTTTTAGCAGTCTCTCCAATCTTTTTGACACACTTGTTGTTACAGTCCTCATAATTTTTGAAAATATTTTTCTTCTCAAAATCTGGCTCTCCACATGAAGAATCATACCAAAAAGCTTCACACTCCTATAAATCTCAAGATTTTGTTCGAAGAACTTAAATAATCCTAGATACCTTAAACTGCTCATTCCAATAGAAAAGCTCATTCCAGTCAGCTGACGTACACTCATTCCGAAGATCAGCATCATATTCCAAATCGCATGTTGTGGGAGCTGCTAAAACTTTTTCAACGGGTTCTTCTTTTTTAAGCTCTTCCAAAATACTGTGTTCTATTTCTTCTTTTTTAGTAGCCTCGGTTGTCTCTTCTTGTTTGGGGATGATCTTTTTAAGCTCTTCTGTTTCTACTTTTTTAGCGTTTTGTTTTAAAAACTCGTTCGGGTTAAAACCGTTGTGATGTTGTTTGCTTTGGTCTTCGTCCTTTTCCGTGCTCAGGACGTCTTCTAGATAATTTTGAGGTTTGACTTTGAAAAAGAAACTGTGTTCATCCTCCGGTGACTTTGTTAATGTTGTTGTGGTGGTAGTGGGGGTGGTTGTTTCTTCAGGTACGATCTCCTCTTCAACCGGCTCTTCTTCTTCTACTTCTACCCTTTCTTCTACTTCGTCTTCTTTTTCTTTTTCTATCGGAACCACATAATCTCCTTGACCACCGTCGCACTTTTTTTTACAATCATCGAAACT</canonical>
            <polymorphic>CTGGCTTGAGAGCTTCTACAAAAGTTCATATGTATAAATTTCTAGTTCAATTCGTAAAAAATAACTGACTATTCAGAATCAAATTCAATGGATCGGTTTGTTTGTAGTTTGGTCGTTTGGTCTCTTCTAGGAGAACAGAAGAAGTTGTTGGAGAAGCCGTCGTAGTTGTCGTCGTCGTTGTTGATGTTGTAGTTGTAGCTGTTGTAGTTGTTGCAATTTCTGAACATTTACATTTCAGAGGAGAGCTAACATCAATTGTCCTACTTTTAGCAGTCTCTCCAATCTTTTTGACACACTTGTTGTTACAGTCCTCATAATTTTTGAAAATATTTTTCTTCTCAAAATCTGGCTCTCCACATGAAGAATCATACCAAAAAGCTTCACACTCCTATAAATCTCAAGATTTTGTTCGAAGAACTTAAATAATCCTAGATACCTTAAACTGCTCATTCCAATAGAAAAGCTCATTCCAGTCAGCTGACGTACACTCATTCCGAAGWTCAGCATCATATTCCAAATCGCATGTTGTGGGAGCTGCTAAAACTTTTTCAACGGGTTCTTCTTTTTTAAGCTCTTCCAAAATACTGTGTTCTATTTCTTCTTTTTTAGTAGCCTCGGTTGTCTCTTCTTGTTTGGGGATGATCTTTTTAAGCTCTTCTGTTTCTACTTTTTTAGCGTTTTGTTTTAAAAACTCGTTCGGGTTAAAACCGTTGTGATGTTGTTTGCTTTGGTCTTCGTCCTTTTCCGTGCTCAGGACGTCTTCTAGATAATTTTGAGGTTTGACTTTGAAAAAGAAACTGTGTTCATCCTCCGGTGACTTTGTTAATGTTGTTGTGGTGGTAGTGGGGGTGGTTGTTTCTTCAGGTACGATCTCCTCTTCAACCGGCTCTTCTTCTTCTACTTCTACCCTTTCTTCTACTTCGTCTTCTTTTTCTTTTTCTATCGGAACCACATAATCTCCTTGACCACCGTCGCACTTTTTTTTACAATCATCGAAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>408 228 142 132 90</canonical_bands>
                <polymorphic_bands>550 228 132 90</polymorphic_bands>
            </assay>
            <assay>
                <site>GATNNNNATC</site>
                <isoschizomers>
                    <enzyme>BsaBI</enzyme>
                    <enzyme>Bse8I</enzyme>
                    <enzyme>BseJI</enzyme>
                    <enzyme>BsiBI</enzyme>
                    <enzyme>BsrBRI</enzyme>
                    <enzyme>MamI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTCACACTCCTATAAATCTCA</pcr_primer_p1>
		<pcr_primer_p2>AAGAGACAACCGAGGCTACTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTTCACACTCCTATAAATCTCAAGATTTTGTTCGAAGAACTTAAATAATCCTAGATACCTTAAACTGCTCATTCCAATAGAAAAGCTCATTCCAGTCAGCTGACGTACACTCATTCCGAAGATCAGCATCATATTCCAAATCGCATGTTGTGGGAGCTGCTAAAACTTTTTCAACGGGTTCTTCTTTTTTAAGCTCTTCCAAAATACTGTGTTCTATTTCTTCTTTTTTAGTAGCCTCGGTTGTCTCTT</canonical_amplicon>
		<polymorphic_amplicon>GCTTCACACTCCTATAAATCTCAAGATTTTGTTCGAAGAACTTAAATAATCCTAGATACCTTAAACTGCTCATTCCAATAGAAAAGCTCATTCCAGTCAGCTGACGTACACTCATTCCGAAGWTCAGCATCATATTCCAAATCGCATGTTGTGGGAGCTGCTAAAACTTTTTCAACGGGTTCTTCTTTTTTAAGCTCTTCCAAAATACTGTGTTCTATTTCTTCTTTTTTAGTAGCCTCGGTTGTCTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9786</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>683173</contig_pos>
        <strand>+</strand>
        <context>AATCCTTTGA[A/G]CAGGCAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTCAAAAGCATTCGTACAGTGGGTTGTACACAAAAATGAATCCTTTGA</left_flank>
        <right_flank>CAGGCAATTTTTGAATTCCGTGTTATTCGAAGACCTTCTCCATCTCTTCG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTCGTTTGAAATTTGCTTTGAATGGGAAACAAGAAGTAGGAAAGTCCCAAGAAGTCGAGAGCTAGCAACATGGAATGAGTTGGACGCATTCGGAATCATCACTGAGAATCTGTAAAAAATGTTTATCTGTAAATCAGTAAATTCGGATATAATATTTTTCAGAGAGAGCTCCCAAATTTCCAAAAGTATCATAACGAAAGAGAATCAGGTTCAAAATGTGCGATCCATCCGTTTTGTATCAATTCAGTCCGAGAAGCCATTGGATTTTTCTGCTTTCCCAAGTGATTCTCATTTTTTTCAAATAAGATTCACTTCTATAACTAAAAACTCTTCTCAGTTAACGCTGAATCCTCATTTTTTATCTACTGCTCAAGAACAGGTTTCTATTTTGCTTTGAAAATCGAAATTTTCATTATTTTCAGACAGAATCCCACTACAAATTCGAAGTTTCAAAAGCATTCGTACAGTGGGTTGTACACAAAAATGAATCCTTTGAACAGGCAATTTTTGAATTCCGTGTTATTCGAAGACCTTCTCCATCTCTTCGAGTTTCCATGTTTCTATTGTTCCTAGTCAATGTAGCCATGACCTTCGATTACTTTCCAGTGTCAAGATTATTTCAAAAAAGGCCCAAATCGGTTAGTACTGAACTTGGATTTTAAATATGATCGAAACTTATGGGGTTATTGAGTGGGAAACAAATCAGCAAATTTCTGGTTTTTTCCTTATTTAACCCATCAATTTGCTGGGGCCGTTTGCTGGAGTTTTCTAGGCCATTTCTGGTGGAGCTACACAGCCAGTCTAAGCGAGATTCAAGCAGGGAACTCCGTGCGCCTTTAATTTTCGAGCTCGTAAATCGCTGGTCGTGTAGCTCCACGAGAACAAGCCATGGCTTAGAAAACTCCAGCAAACGGCCTCAGCAAGTTGCTGGGTTTCGGCATAAGGAAAAAACTAGACATTTGCTGATTATTCAGGGATTCTATCTATGTTGTGGATT</canonical>
            <polymorphic>TATTTCGTTTGAAATTTGCTTTGAATGGGAAACAAGAAGTAGGAAAGTCCCAAGAAGTCGAGAGCTAGCAACATGGAATGAGTTGGACGCATTCGGAATCATCACTGAGAATCTGTAAAAAATGTTTATCTGTAAATCAGTAAATTCGGATATAATATTTTTCAGAGAGAGCTCCCAAATTTCCAAAAGTATCATAACGAAAGAGAATCAGGTTCAAAATGTGCGATCCATCCGTTTTGTATCAATTCAGTCCGAGAAGCCATTGGATTTTTCTGCTTTCCCAAGTGATTCTCATTTTTTTCAAATAAGATTCACTTCTATAACTAAAAACTCTTCTCAGTTAACGCTGAATCCTCATTTTTTATCTACTGCTCAAGAACAGGTTTCTATTTTGCTTTGAAAATCGAAATTTTCATTATTTTCAGACAGAATCCCACTACAAATTCGAAGTTTCAAAAGCATTCGTACAGTGGGTTGTACACAAAAATGAATCCTTTGARCAGGCAATTTTTGAATTCCGTGTTATTCGAAGACCTTCTCCATCTCTTCGAGTTTCCATGTTTCTATTGTTCCTAGTCAATGTAGCCATGACCTTCGATTACTTTCCAGTGTCAAGATTATTTCAAAAAAGGCCCAAATCGGTTAGTACTGAACTTGGATTTTAAATATGATCGAAACTTATGGGGTTATTGAGTGGGAAACAAATCAGCAAATTTCTGGTTTTTTCCTTATTTAACCCATCAATTTGCTGGGGCCGTTTGCTGGAGTTTTCTAGGCCATTTCTGGTGGAGCTACACAGCCAGTCTAAGCGAGATTCAAGCAGGGAACTCCGTGCGCCTTTAATTTTCGAGCTCGTAAATCGCTGGTCGTGTAGCTCCACGAGAACAAGCCATGGCTTAGAAAACTCCAGCAAACGGCCTCAGCAAGTTGCTGGGTTTCGGCATAAGGAAAAAACTAGACATTTGCTGATTATTCAGGGATTCTATCTATGTTGTGGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAGAATCCCACTACAAATTC</pcr_primer_p1>
		<pcr_primer_p2>CGATCATATTTAAAATCCAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACAGAATCCCACTACAAATTCGAAGTTTCAAAAGCATTCGTACAGTGGGTTGTACACAAAAATGAATCCTTTGAACAGGCAATTTTTGAATTCCGTGTTATTCGAAGACCTTCTCCATCTCTTCGAGTTTCCATGTTTCTATTGTTCCTAGTCAATGTAGCCATGACCTTCGATTACTTTCCAGTGTCAAGATTATTTCAAAAAAGGCCCAAATCGGTTAGTACTGAACTTGGATTTTAAATATGATCG</canonical_amplicon>
		<polymorphic_amplicon>GACAGAATCCCACTACAAATTCGAAGTTTCAAAAGCATTCGTACAGTGGGTTGTACACAAAAATGAATCCTTTGARCAGGCAATTTTTGAATTCCGTGTTATTCGAAGACCTTCTCCATCTCTTCGAGTTTCCATGTTTCTATTGTTCCTAGTCAATGTAGCCATGACCTTCGATTACTTTCCAGTGTCAAGATTATTTCAAAAAAGGCCCAAATCGGTTAGTACTGAACTTGGATTTTAAATATGATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9787</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>686288</contig_pos>
        <strand>+</strand>
        <context>GTTGTGGGAC[A/G]TTTATACTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGTCGACATCGTTATCATCATCATAAATATCCCACATGTGTTGTGGGAC</left_flank>
        <right_flank>TTTATACTCGGACCAGTCTGTACTGGAACGTGCTCAAGACCAAGTTTACG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTCGACAAAGAAACTGATACGATCTGTCCGCCTTCTGAAGGCAGCCGTCACGTCGAAATCGATCCAATCGCTTAATTCGTCGTCGGATCGAGATTCGATTTGAAATTTTTCATTGTTCTGAAAAGTTGAATGCATTTTATTTCAAAACTAGATCTACCAACCATATCATCTTCGAAGAAATATATAGAAAATCTGCCGGACCTCCTCGCTGAGTTGTTGCGATGTAACCGAAGCTGGAAACATATATATTTTGAAAAGCACAATAATCAAAAACTCACTTTCAGTATTGCCTTAGTGACTTCTTCATTTTGAGCATCTCGTGCAGCCAATGAAAGATTGTAAGACAAAACTAATCCTTCGCTATCTTCAGTGATCTCCTGAAATCCGGAAGGTTTGAAAACTTTACTCGAATAGTAATTTTTACCTTTGGATAATAATGCCGGACCCAGTCGACATCGTTATCATCATCATAAATATCCCACATGTGTTGTGGGACATTTATACTCGGACCAGTCTGTACTGGAACGTGCTCAAGACCAAGTTTACGAAGCATGCCACTTCGCAAACCATGAGCTTCCGAGGCACGATTTATTGGTGGATCAGCAGCAGACACTGACATGATGATCGGAGTGATTGCGAGAAGGAGGAGGTGGAGGAGAATGGCGGACAGTTGGAAGCGGAAAACAAGTGATTTTGTGCTTGAAATCGTTGTCGTTGTCCGCACAGAGTCGTTCATAGTTGAGTTGGGCGCATCAGGCAGCCACTGGACATATCGTAGGGGATGTTGAAAATACAGAACGGACAAAGGGAAAGGGAAACAGGGGACAAGGACTTCTATGTGGGGCTCGCCGAGATGACCGACTCTCCTTTTGCTTAGCGCATAATCAGGCTGAAAATTGGAAGATATAGAATACGAGGGAACAAGACAATCAATGATAAAAACAATGAATAAAAGTGGAGGGGGTTACCTAATAGAAGGGGACCTATACTGCAAAGT</canonical>
            <polymorphic>CAATTCGACAAAGAAACTGATACGATCTGTCCGCCTTCTGAAGGCAGCCGTCACGTCGAAATCGATCCAATCGCTTAATTCGTCGTCGGATCGAGATTCGATTTGAAATTTTTCATTGTTCTGAAAAGTTGAATGCATTTTATTTCAAAACTAGATCTACCAACCATATCATCTTCGAAGAAATATATAGAAAATCTGCCGGACCTCCTCGCTGAGTTGTTGCGATGTAACCGAAGCTGGAAACATATATATTTTGAAAAGCACAATAATCAAAAACTCACTTTCAGTATTGCCTTAGTGACTTCTTCATTTTGAGCATCTCGTGCAGCCAATGAAAGATTGTAAGACAAAACTAATCCTTCGCTATCTTCAGTGATCTCCTGAAATCCGGAAGGTTTGAAAACTTTACTCGAATAGTAATTTTTACCTTTGGATAATAATGCCGGACCCAGTCGACATCGTTATCATCATCATAAATATCCCACATGTGTTGTGGGACRTTTATACTCGGACCAGTCTGTACTGGAACGTGCTCAAGACCAAGTTTACGAAGCATGCCACTTCGCAAACCATGAGCTTCCGAGGCACGATTTATTGGTGGATCAGCAGCAGACACTGACATGATGATCGGAGTGATTGCGAGAAGGAGGAGGTGGAGGAGAATGGCGGACAGTTGGAAGCGGAAAACAAGTGATTTTGTGCTTGAAATCGTTGTCGTTGTCCGCACAGAGTCGTTCATAGTTGAGTTGGGCGCATCAGGCAGCCACTGGACATATCGTAGGGGATGTTGAAAATACAGAACGGACAAAGGGAAAGGGAAACAGGGGACAAGGACTTCTATGTGGGGCTCGCCGAGATGACCGACTCTCCTTTTGCTTAGCGCATAATCAGGCTGAAAATTGGAAGATATAGAATACGAGGGAACAAGACAATCAATGATAAAAACAATGAATAAAAGTGGAGGGGGTTACCTAATAGAAGGGGACCTATACTGCAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTTCTTCATTTTGAGCATCT</pcr_primer_p1>
		<pcr_primer_p2>CTTCGTAAACTTGGTCTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GACTTCTTCATTTTGAGCATCTCGTGCAGCCAATGAAAGATTGTAAGACAAAACTAATCCTTCGCTATCTTCAGTGATCTCCTGAAATCCGGAAGGTTTGAAAACTTTACTCGAATAGTAATTTTTACCTTTGGATAATAATGCCGGACCCAGTCGACATCGTTATCATCATCATAAATATCCCACATGTGTTGTGGGACATTTATACTCGGACCAGTCTGTACTGGAACGTGCTCAAGACCAAGTTTACGAAG</canonical_amplicon>
		<polymorphic_amplicon>GACTTCTTCATTTTGAGCATCTCGTGCAGCCAATGAAAGATTGTAAGACAAAACTAATCCTTCGCTATCTTCAGTGATCTCCTGAAATCCGGAAGGTTTGAAAACTTTACTCGAATAGTAATTTTTACCTTTGGATAATAATGCCGGACCCAGTCGACATCGTTATCATCATCATAAATATCCCACATGTGTTGTGGGACRTTTATACTCGGACCAGTCTGTACTGGAACGTGCTCAAGACCAAGTTTACGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9830</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>762041</contig_pos>
        <strand>+</strand>
        <context>GACCAGACAT[C/T]TACCAAAACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGACATCGTGGACCATATTCAAAGCAATCTCTGGGTTCCGACCAGACAT</left_flank>
        <right_flank>TACCAAAACTGGTTTCCTAAATCTCAACTCTCCTATTGGTGGTTTGGCAT</right_flank>
        <qual_score>149</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACCTCCGGCACTCTGTCCAAATATTGTCACATTATTAGGATCTCCTCCAAACGATGCGATGTGTTTTTGGACCCACTTCAGAGCAAGTGTTTGGTCCCATAAACCAAAGTTTCCCGGACAAGTTTCGTCTCCTGTGGAGAAAAAACCGAGTGCTCCAAGACGATAGTTTATGGTTACTACCAAAACATCTTTTAGAGGTAAAGTTCCTGTCAACGAGTAGTCACAATAATCTCGAGAAGCACAAAGTTCGAAACCTCCACCATGAATGAATACCATGACAGGTCTCTTGATCTGAAAAATTGGTTGTCCCCTACTATAACTGTTCGAGCTTATTACATATTCTTTACATTGCCATCTTGGACGAAACACATTCAACGTCAAACAGTTCGCTTCATCCGGCACGTCTTGATTTTTAAGATCGATCTTTTCATAAAACATTCCAGAAGACGGACATCGTGGACCATATTCAAAGCAATCTCTGGGTTCCGACCAGACATCTACCAAAACTGGTTTCCTAAATCTCAACTCTCCTATTGGTGGTTTGGCATACGGGATGCCTAAAAATCCGTCCTTTCATTTCTCCCCCTAAATGACAAAAATAGAAAAGTTCAGAACCAAAAAACCTACATGTCGATAAAAATTTCCACGAACCGGACCACACGATGCGAAGAATACATTCGAATGGTGTTCCGGTTTGAGATGTGAGAGATGGCCACCCATTTCTGTTTTATCCTATTAGTACAAGTCTCCTTTTATATTGAAACCGAACAGGGAGGGACTGGAACACTAACGAGGTGAACAAATCAACAAAAAAAATCGTCTGGATTTTCTCTACCAAAACCTATTTGTGTTGGACTAATACATCAGCGGTAGTGGAGGTCTGTCTCGTGGTTTTTGAGTGGTTTCTTTGAAAAATTGGAACGTTGTTTGTTGAGGTTTACTGTCAGAATCGTAACAAATTTATTGAAAAGTACAAAATACAAAAGTTGGTGTTGAAT</canonical>
            <polymorphic>ACACCTCCGGCACTCTGTCCAAATATTGTCACATTATTAGGATCTCCTCCAAACGATGCGATGTGTTTTTGGACCCACTTCAGAGCAAGTGTTTGGTCCCATAAACCAAAGTTTCCCGGACAAGTTTCGTCTCCTGTGGAGAAAAAACCGAGTGCTCCAAGACGATAGTTTATGGTTACTACCAAAACATCTTTTAGAGGTAAAGTTCCTGTCAACGAGTAGTCACAATAATCTCGAGAAGCACAAAGTTCGAAACCTCCACCATGAATGAATACCATGACAGGTCTCTTGATCTGAAAAATTGGTTGTCCCCTACTATAACTGTTCGAGCTTATTACATATTCTTTACATTGCCATCTTGGACGAAACACATTCAACGTCAAACAGTTCGCTTCATCCGGCACGTCTTGATTTTTAAGATCGATCTTTTCATAAAACATTCCAGAAGACGGACATCGTGGACCATATTCAAAGCAATCTCTGGGTTCCGACCAGACATYTACCAAAACTGGTTTCCTAAATCTCAACTCTCCTATTGGTGGTTTGGCATACGGGATGCCTAAAAATCCGTCCTTTCATTTCTCCCCCTAAATGACAAAAATAGAAAAGTTCAGAACCAAAAAACCTACATGTCGATAAAAATTTCCACGAACCGGACCACACGATGCGAAGAATACATTCGAATGGTGTTCCGGTTTGAGATGTGAGAGATGGCCACCCATTTCTGTTTTATCCTATTAGTACAAGTCTCCTTTTATATTGAAACCGAACAGGGAGGGACTGGAACACTAACGAGGTGAACAAATCAACAAAAAAAATCGTCTGGATTTTCTCTACCAAAACCTATTTGTGTTGGACTAATACATCAGCGGTAGTGGAGGTCTGTCTCGTGGTTTTTGAGTGGTTTCTTTGAAAAATTGGAACGTTGTTTGTTGAGGTTTACTGTCAGAATCGTAACAAATTTATTGAAAAGTACAAAATACAAAAGTTGGTGTTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACATTCAACGTCAAACAGT</pcr_primer_p1>
		<pcr_primer_p2>TTCTGAACTTTTCTATTTTTGTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACACATTCAACGTCAAACAGTTCGCTTCATCCGGCACGTCTTGATTTTTAAGATCGATCTTTTCATAAAACATTCCAGAAGACGGACATCGTGGACCATATTCAAAGCAATCTCTGGGTTCCGACCAGACATCTACCAAAACTGGTTTCCTAAATCTCAACTCTCCTATTGGTGGTTTGGCATACGGGATGCCTAAAAATCCGTCCTTTCATTTCTCCCCCTAAATGACAAAAATAGAAAAGTTCAGAA</canonical_amplicon>
		<polymorphic_amplicon>ACACATTCAACGTCAAACAGTTCGCTTCATCCGGCACGTCTTGATTTTTAAGATCGATCTTTTCATAAAACATTCCAGAAGACGGACATCGTGGACCATATTCAAAGCAATCTCTGGGTTCCGACCAGACATYTACCAAAACTGGTTTCCTAAATCTCAACTCTCCTATTGGTGGTTTGGCATACGGGATGCCTAAAAATCCGTCCTTTCATTTCTCCCCCTAAATGACAAAAATAGAAAAGTTCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9831</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>762116</contig_pos>
        <strand>+</strand>
        <context>AATCCGTCCW[C/T]TSATTTCTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAACTCTCCTATTGGTGGTTTGGCATACGGGATGCCTAAAAATCCGTCCT</left_flank>
        <right_flank>TCATTTCTCCCCCTAAATGACAAAAATAGAAAAGTTCAGAACCAAAAAAC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTTCAGAGCAAGTGTTTGGTCCCATAAACCAAAGTTTCCCGGACAAGTTTCGTCTCCTGTGGAGAAAAAACCGAGTGCTCCAAGACGATAGTTTATGGTTACTACCAAAACATCTTTTAGAGGTAAAGTTCCTGTCAACGAGTAGTCACAATAATCTCGAGAAGCACAAAGTTCGAAACCTCCACCATGAATGAATACCATGACAGGTCTCTTGATCTGAAAAATTGGTTGTCCCCTACTATAACTGTTCGAGCTTATTACATATTCTTTACATTGCCATCTTGGACGAAACACATTCAACGTCAAACAGTTCGCTTCATCCGGCACGTCTTGATTTTTAAGATCGATCTTTTCATAAAACATTCCAGAAGACGGACATCGTGGACCATATTCAAAGCAATCTCTGGGTTCCGACCAGACATCTACCAAAACTGGTTTCCTAAATCTCAACTCTCCTATTGGTGGTTTGGCATACGGGATGCCTAAAAATCCGTCCTTTCATTTCTCCCCCTAAATGACAAAAATAGAAAAGTTCAGAACCAAAAAACCTACATGTCGATAAAAATTTCCACGAACCGGACCACACGATGCGAAGAATACATTCGAATGGTGTTCCGGTTTGAGATGTGAGAGATGGCCACCCATTTCTGTTTTATCCTATTAGTACAAGTCTCCTTTTATATTGAAACCGAACAGGGAGGGACTGGAACACTAACGAGGTGAACAAATCAACAAAAAAAATCGTCTGGATTTTCTCTACCAAAACCTATTTGTGTTGGACTAATACATCAGCGGTAGTGGAGGTCTGTCTCGTGGTTTTTGAGTGGTTTCTTTGAAAAATTGGAACGTTGTTTGTTGAGGTTTACTGTCAGAATCGTAACAAATTTATTGAAAAGTACAAAATACAAAAGTTGGTGTTGAATTGTTGGTGTTGAATTTAACAAGTCAATTAGGATCTTCCATAAACCACGGTTTCCAGATTCTTGTTGTTCTTTCTC</canonical>
            <polymorphic>CACTTCAGAGCAAGTGTTTGGTCCCATAAACCAAAGTTTCCCGGACAAGTTTCGTCTCCTGTGGAGAAAAAACCGAGTGCTCCAAGACGATAGTTTATGGTTACTACCAAAACATCTTTTAGAGGTAAAGTTCCTGTCAACGAGTAGTCACAATAATCTCGAGAAGCACAAAGTTCGAAACCTCCACCATGAATGAATACCATGACAGGTCTCTTGATCTGAAAAATTGGTTGTCCCCTACTATAACTGTTCGAGCTTATTACATATTCTTTACATTGCCATCTTGGACGAAACACATTCAACGTCAAACAGTTCGCTTCATCCGGCACGTCTTGATTTTTAAGATCGATCTTTTCATAAAACATTCCAGAAGACGGACATCGTGGACCATATTCAAAGCAATCTCTGGGTTCCGACCAGACATCTACCAAAACTGGTTTCCTAAATCTCAACTCTCCTATTGGTGGTTTGGCATACGGGATGCCTAAAAATCCGTCCTYTCATTTCTCCCCCTAAATGACAAAAATAGAAAAGTTCAGAACCAAAAAACCTACATGTCGATAAAAATTTCCACGAACCGGACCACACGATGCGAAGAATACATTCGAATGGTGTTCCGGTTTGAGATGTGAGAGATGGCCACCCATTTCTGTTTTATCCTATTAGTACAAGTCTCCTTTTATATTGAAACCGAACAGGGAGGGACTGGAACACTAACGAGGTGAACAAATCAACAAAAAAAATCGTCTGGATTTTCTCTACCAAAACCTATTTGTGTTGGACTAATACATCAGCGGTAGTGGAGGTCTGTCTCGTGGTTTTTGAGTGGTTTCTTTGAAAAATTGGAACGTTGTTTGTTGAGGTTTACTGTCAGAATCGTAACAAATTTATTGAAAAGTACAAAATACAAAAGTTGGTGTTGAATTGTTGGTGTTGAATTTAACAAGTCAATTAGGATCTTCCATAAACCACGGTTTCCAGATTCTTGTTGTTCTTTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCACGTCTTGATTTTTAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTATCGACATGTAGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GGCACGTCTTGATTTTTAAGATCGATCTTTTCATAAAACATTCCAGAAGACGGACATCGTGGACCATATTCAAAGCAATCTCTGGGTTCCGACCAGACATCTACCAAAACTGGTTTCCTAAATCTCAACTCTCCTATTGGTGGTTTGGCATACGGGATGCCTAAAAATCCGTCCTTTCATTTCTCCCCCTAAATGACAAAAATAGAAAAGTTCAGAACCAAAAAACCTACATGTCGATAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGCACGTCTTGATTTTTAAGATCGATCTTTTCATAAAACATTCCAGAAGACGGACATCGTGGACCATATTCAAAGCAATCTCTGGGTTCCGACCAGACATCTACCAAAACTGGTTTCCTAAATCTCAACTCTCCTATTGGTGGTTTGGCATACGGGATGCCTAAAAATCCGTCCTYTCATTTCTCCCCCTAAATGACAAAAATAGAAAAGTTCAGAACCAAAAAACCTACATGTCGATAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9832</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>765833</contig_pos>
        <strand>+</strand>
        <context>ACTCAATTTA[A/T]TCAAAAGCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCCACATGACATAAATCCTGATGGGGAGAACTTGAAGGTACTCAATTTA</left_flank>
        <right_flank>TCAAAAGCTCAATGCTTTGCTCTTGATACCATTTCATTAGATTAGAAGAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGAAAACATGATTTCCAGATTTTGAAGCAGCTTGAGCCGAATTTAGAATACCAACATTGAAAACTGCATCACCAAGGAACTGAAAACTATGACTGATATTGTTTAGACGTTTAAAGCAAACCTCAATAAATCTCTTCCTGACAGCTGCCACATCGGATTTGTCTATTCCTTCTGAATACCAATTCTCCAACTTTTCGTGAACGTCTTCTGGTTTCGGGACAACATCCAATTTGAACAATTTCTTCGATGAGGCTTCAATAGAGTCGCCGATTCGAGAATAAATTGGATCAGGAACAGCTGAATTTGAAGATGTAAAAATGAAATATATTGAAAACTCACCCATGATAAGTCCTTCAAACTCAGTTCTCCCAAAAATAAAATTTTTTTTGGGTGCATTTTTTCTCAATTCATCCAACGATTCTGTGAAGAAATCACCGTCCGCATTAGGTCCACATGACATAAATCCTGATGGGGAGAACTTGAAGGTACTCAATTTATTCAAAAGCTCAATGCTTTGCTCTTGATACCATTTCATTAGATTAGAAGAGTCTGAAACCTATTTGTAGTTAAGAACGACTATAAAGTTAAGCTTTCACCAGTTTGTGAACATCCATTTTCTATCGCAAACTCTTTGAAAATAAGTGCTTGATTCGCTTTGGATCGACATGCCATTTCACAATCAGCGCTTCCAGACATTGCTATGCATTTTTGGAAGAGGTCTGAATTTCAACTAAAATGTGAATATTGAAACACACCGATTACCTCTAGAACGAGTACTGAGGGTCAATAAATCAGCACAAACTCCTCCAGCACTACATCCGAAAACTGTAACGTTGTTGGGATCACCTCCAAATGATCTTATATGTTTCTGAACCCATTTTAAAGCGAGAGTCAAATCCCAAAGAGCCAAGTTTCCATGACATTTTTCATCTCCAGTTGTGAAGAAACCTAACACTCCCACTCGGTAATTGGCTGTCACAATGATAACATCCTTCAAC</canonical>
            <polymorphic>CAAGAAAACATGATTTCCAGATTTTGAAGCAGCTTGAGCCGAATTTAGAATACCAACATTGAAAACTGCATCACCAAGGAACTGAAAACTATGACTGATATTGTTTAGACGTTTAAAGCAAACCTCAATAAATCTCTTCCTGACAGCTGCCACATCGGATTTGTCTATTCCTTCTGAATACCAATTCTCCAACTTTTCGTGAACGTCTTCTGGTTTCGGGACAACATCCAATTTGAACAATTTCTTCGATGAGGCTTCAATAGAGTCGCCGATTCGAGAATAAATTGGATCAGGAACAGCTGAATTTGAAGATGTAAAAATGAAATATATTGAAAACTCACCCATGATAAGTCCTTCAAACTCAGTTCTCCCAAAAATAAAATTTTTTTTGGGTGCATTTTTTCTCAATTCATCCAACGATTCTGTGAAGAAATCACCGTCCGCATTAGGTCCACATGACATAAATCCTGATGGGGAGAACTTGAAGGTACTCAATTTAWTCAAAAGCTCAATGCTTTGCTCTTGATACCATTTCATTAGATTAGAAGAGTCTGAAACCTATTTGTAGTTAAGAACGACTATAAAGTTAAGCTTTCACCAGTTTGTGAACATCCATTTTCTATCGCAAACTCTTTGAAAATAAGTGCTTGATTCGCTTTGGATCGACATGCCATTTCACAATCAGCGCTTCCAGACATTGCTATGCATTTTTGGAAGAGGTCTGAATTTCAACTAAAATGTGAATATTGAAACACACCGATTACCTCTAGAACGAGTACTGAGGGTCAATAAATCAGCACAAACTCCTCCAGCACTACATCCGAAAACTGTAACGTTGTTGGGATCACCTCCAAATGATCTTATATGTTTCTGAACCCATTTTAAAGCGAGAGTCAAATCCCAAAGAGCCAAGTTTCCATGACATTTTTCATCTCCAGTTGTGAAGAAACCTAACACTCCCACTCGGTAATTGGCTGTCACAATGATAACATCCTTCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAATTCATCCAACGATTCT</pcr_primer_p1>
		<pcr_primer_p2>GAATCAAGCACTTATTTTCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAATTCATCCAACGATTCTGTGAAGAAATCACCGTCCGCATTAGGTCCACATGACATAAATCCTGATGGGGAGAACTTGAAGGTACTCAATTTATTCAAAAGCTCAATGCTTTGCTCTTGATACCATTTCATTAGATTAGAAGAGTCTGAAACCTATTTGTAGTTAAGAACGACTATAAAGTTAAGCTTTCACCAGTTTGTGAACATCCATTTTCTATCGCAAACTCTTTGAAAATAAGTGCTTGATTC</canonical_amplicon>
		<polymorphic_amplicon>TCAATTCATCCAACGATTCTGTGAAGAAATCACCGTCCGCATTAGGTCCACATGACATAAATCCTGATGGGGAGAACTTGAAGGTACTCAATTTAWTCAAAAGCTCAATGCTTTGCTCTTGATACCATTTCATTAGATTAGAAGAGTCTGAAACCTATTTGTAGTTAAGAACGACTATAAAGTTAAGCTTTCACCAGTTTGTGAACATCCATTTTCTATCGCAAACTCTTTGAAAATAAGTGCTTGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9833</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>765731</contig_pos>
        <strand></strand>
        <context>TTTGGGTGCA[T/G]TTTTTCTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TAAGTCCTTCAAACTCAGTTCTCCCAAAAATAAAATTTTTTTTGGGTGCA</left_flank>
        <right_flank>TTTTTCTCAATTCATCCAACGATTCTGTGAAGAAATCACCGTCCGCATTA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCGAATATGTATCGAAAATCGTTTCCATGGCTGGATGCTTTAAAATCAAGAAGATTACCTAGAGGACCATAGCCATCCGGGTTACAATAATCGAATGAATACAAGAAAACATGATTTCCAGATTTTGAAGCAGCTTGAGCCGAATTTAGAATACCAACATTGAAAACTGCATCACCAAGGAACTGAAAACTATGACTGATATTGTTTAGACGTTTAAAGCAAACCTCAATAAATCTCTTCCTGACAGCTGCCACATCGGATTTGTCTATTCCTTCTGAATACCAATTCTCCAACTTTTCGTGAACGTCTTCTGGTTTCGGGACAACATCCAATTTGAACAATTTCTTCGATGAGGCTTCAATAGAGTCGCCGATTCGAGAATAAATTGGATCAGGAACAGCTGAATTTGAAGATGTAAAAATGAAATATATTGAAAACTCACCCATGATAAGTCCTTCAAACTCAGTTCTCCCAAAAATAAAATTTTTTTTGGGTGCATTTTTTCTCAATTCATCCAACGATTCTGTGAAGAAATCACCGTCCGCATTAGGTCCACATGACATAAATCCTGATGGGGAGAACTTGAAGGTACTCAATTTATTCAAAAGCTCAATGCTTTGCTCTTGATACCATTTCATTAGATTAGAAGAGTCTGAAACCTATTTGTAGTTAAGAACGACTATAAAGTTAAGCTTTCACCAGTTTGTGAACATCCATTTTCTATCGCAAACTCTTTGAAAATAAGTGCTTGATTCGCTTTGGATCGACATGCCATTTCACAATCAGCGCTTCCAGACATTGCTATGCATTTTTGGAAGAGGTCTGAATTTCAACTAAAATGTGAATATTGAAACACACCGATTACCTCTAGAACGAGTACTGAGGGTCAATAAATCAGCACAAACTCCTCCAGCACTACATCCGAAAACTGTAACGTTGTTGGGATCACCTCCAAATGATCTTATATGTTTCTGAACCCATTTTAAAGCGAGAGTCAAA</canonical>
            <polymorphic>CCCGAATATGTATCGAAAATCGTTTCCATGGCTGGATGCTTTAAAATCAAGAAGATTACCTAGAGGACCATAGCCATCCGGGTTACAATAATCGAATGAATACAAGAAAACATGATTTCCAGATTTTGAAGCAGCTTGAGCCGAATTTAGAATACCAACATTGAAAACTGCATCACCAAGGAACTGAAAACTATGACTGATATTGTTTAGACGTTTAAAGCAAACCTCAATAAATCTCTTCCTGACAGCTGCCACATCGGATTTGTCTATTCCTTCTGAATACCAATTCTCCAACTTTTCGTGAACGTCTTCTGGTTTCGGGACAACATCCAATTTGAACAATTTCTTCGATGAGGCTTCAATAGAGTCGCCGATTCGAGAATAAATTGGATCAGGAACAGCTGAATTTGAAGATGTAAAAATGAAATATATTGAAAACTCACCCATGATAAGTCCTTCAAACTCAGTTCTCCCAAAAATAAAATTTTTTTTGGGTGCAKTTTTTCTCAATTCATCCAACGATTCTGTGAAGAAATCACCGTCCGCATTAGGTCCACATGACATAAATCCTGATGGGGAGAACTTGAAGGTACTCAATTTATTCAAAAGCTCAATGCTTTGCTCTTGATACCATTTCATTAGATTAGAAGAGTCTGAAACCTATTTGTAGTTAAGAACGACTATAAAGTTAAGCTTTCACCAGTTTGTGAACATCCATTTTCTATCGCAAACTCTTTGAAAATAAGTGCTTGATTCGCTTTGGATCGACATGCCATTTCACAATCAGCGCTTCCAGACATTGCTATGCATTTTTGGAAGAGGTCTGAATTTCAACTAAAATGTGAATATTGAAACACACCGATTACCTCTAGAACGAGTACTGAGGGTCAATAAATCAGCACAAACTCCTCCAGCACTACATCCGAAAACTGTAACGTTGTTGGGATCACCTCCAAATGATCTTATATGTTTCTGAACCCATTTTAAAGCGAGAGTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAGCTGAATTTGAAGATGTAA</pcr_primer_p1>
		<pcr_primer_p2>TCTAATGAAATGGTATCAAGAGC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AACAGCTGAATTTGAAGATGTAAAAATGAAATATATTGAAAACTCACCCATGATAAGTCCTTCAAACTCAGTTCTCCCAAAAATAAAATTTTTTTTGGGTGCATTTTTTCTCAATTCATCCAACGATTCTGTGAAGAAATCACCGTCCGCATTAGGTCCACATGACATAAATCCTGATGGGGAGAACTTGAAGGTACTCAATTTATTCAAAAGCTCAATGCTTTGCTCTTGATACCATTTCATTAGA</canonical_amplicon>
		<polymorphic_amplicon>AACAGCTGAATTTGAAGATGTAAAAATGAAATATATTGAAAACTCACCCATGATAAGTCCTTCAAACTCAGTTCTCCCAAAAATAAAATTTTTTTTGGGTGCAKTTTTTCTCAATTCATCCAACGATTCTGTGAAGAAATCACCGTCCGCATTAGGTCCACATGACATAAATCCTGATGGGGAGAACTTGAAGGTACTCAATTTATTCAAAAGCTCAATGCTTTGCTCTTGATACCATTTCATTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9834</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>765673</contig_pos>
        <strand>+</strand>
        <context>TTGAAAACTC[A/G]CCCATGATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAGGAACAGCTGAATTTGAAGATGTAAAAATGAAATATATTGAAAACTC</left_flank>
        <right_flank>CCCATGATAAGTCCTTCAAACTCAGTTCTCCCAAAAATAAAATTTTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTTTCCATCATTTGAAAATCGTTTTCAGTTGGTACAAACGTATCATATCCACCGCTCCCGAATATGTATCGAAAATCGTTTCCATGGCTGGATGCTTTAAAATCAAGAAGATTACCTAGAGGACCATAGCCATCCGGGTTACAATAATCGAATGAATACAAGAAAACATGATTTCCAGATTTTGAAGCAGCTTGAGCCGAATTTAGAATACCAACATTGAAAACTGCATCACCAAGGAACTGAAAACTATGACTGATATTGTTTAGACGTTTAAAGCAAACCTCAATAAATCTCTTCCTGACAGCTGCCACATCGGATTTGTCTATTCCTTCTGAATACCAATTCTCCAACTTTTCGTGAACGTCTTCTGGTTTCGGGACAACATCCAATTTGAACAATTTCTTCGATGAGGCTTCAATAGAGTCGCCGATTCGAGAATAAATTGGATCAGGAACAGCTGAATTTGAAGATGTAAAAATGAAATATATTGAAAACTCACCCATGATAAGTCCTTCAAACTCAGTTCTCCCAAAAATAAAATTTTTTTTGGGTGCATTTTTTCTCAATTCATCCAACGATTCTGTGAAGAAATCACCGTCCGCATTAGGTCCACATGACATAAATCCTGATGGGGAGAACTTGAAGGTACTCAATTTATTCAAAAGCTCAATGCTTTGCTCTTGATACCATTTCATTAGATTAGAAGAGTCTGAAACCTATTTGTAGTTAAGAACGACTATAAAGTTAAGCTTTCACCAGTTTGTGAACATCCATTTTCTATCGCAAACTCTTTGAAAATAAGTGCTTGATTCGCTTTGGATCGACATGCCATTTCACAATCAGCGCTTCCAGACATTGCTATGCATTTTTGGAAGAGGTCTGAATTTCAACTAAAATGTGAATATTGAAACACACCGATTACCTCTAGAACGAGTACTGAGGGTCAATAAATCAGCACAAACTCCTCCAGCACTACATCCGAAAACTGTAACGTTGTT</canonical>
            <polymorphic>TACTTTCCATCATTTGAAAATCGTTTTCAGTTGGTACAAACGTATCATATCCACCGCTCCCGAATATGTATCGAAAATCGTTTCCATGGCTGGATGCTTTAAAATCAAGAAGATTACCTAGAGGACCATAGCCATCCGGGTTACAATAATCGAATGAATACAAGAAAACATGATTTCCAGATTTTGAAGCAGCTTGAGCCGAATTTAGAATACCAACATTGAAAACTGCATCACCAAGGAACTGAAAACTATGACTGATATTGTTTAGACGTTTAAAGCAAACCTCAATAAATCTCTTCCTGACAGCTGCCACATCGGATTTGTCTATTCCTTCTGAATACCAATTCTCCAACTTTTCGTGAACGTCTTCTGGTTTCGGGACAACATCCAATTTGAACAATTTCTTCGATGAGGCTTCAATAGAGTCGCCGATTCGAGAATAAATTGGATCAGGAACAGCTGAATTTGAAGATGTAAAAATGAAATATATTGAAAACTCRCCCATGATAAGTCCTTCAAACTCAGTTCTCCCAAAAATAAAATTTTTTTTGGGTGCATTTTTTCTCAATTCATCCAACGATTCTGTGAAGAAATCACCGTCCGCATTAGGTCCACATGACATAAATCCTGATGGGGAGAACTTGAAGGTACTCAATTTATTCAAAAGCTCAATGCTTTGCTCTTGATACCATTTCATTAGATTAGAAGAGTCTGAAACCTATTTGTAGTTAAGAACGACTATAAAGTTAAGCTTTCACCAGTTTGTGAACATCCATTTTCTATCGCAAACTCTTTGAAAATAAGTGCTTGATTCGCTTTGGATCGACATGCCATTTCACAATCAGCGCTTCCAGACATTGCTATGCATTTTTGGAAGAGGTCTGAATTTCAACTAAAATGTGAATATTGAAACACACCGATTACCTCTAGAACGAGTACTGAGGGTCAATAAATCAGCACAAACTCCTCCAGCACTACATCCGAAAACTGTAACGTTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>180 143 139 79 64 55 53 49 43 39 32 32 26 18 15 12 10 9 2</canonical_bands>
                <polymorphic_bands>194 180 143 79 64 53 49 43 39 32 32 26 18 15 12 10 9 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATAAATTGGATCAGGAACAG</pcr_primer_p1>
		<pcr_primer_p2>TATCAAGAGCAAAGCATTGAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAATAAATTGGATCAGGAACAGCTGAATTTGAAGATGTAAAAATGAAATATATTGAAAACTCACCCATGATAAGTCCTTCAAACTCAGTTCTCCCAAAAATAAAATTTTTTTTGGGTGCATTTTTTCTCAATTCATCCAACGATTCTGTGAAGAAATCACCGTCCGCATTAGGTCCACATGACATAAATCCTGATGGGGAGAACTTGAAGGTACTCAATTTATTCAAAAGCTCAATGCTTTGCTCTTGATA</canonical_amplicon>
		<polymorphic_amplicon>GAATAAATTGGATCAGGAACAGCTGAATTTGAAGATGTAAAAATGAAATATATTGAAAACTCRCCCATGATAAGTCCTTCAAACTCAGTTCTCCCAAAAATAAAATTTTTTTTGGGTGCATTTTTTCTCAATTCATCCAACGATTCTGTGAAGAAATCACCGTCCGCATTAGGTCCACATGACATAAATCCTGATGGGGAGAACTTGAAGGTACTCAATTTATTCAAAAGCTCAATGCTTTGCTCTTGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9835</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>765577</contig_pos>
        <strand>+</strand>
        <context>TGAACAATTT[C/T]TTCGATGAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCGTGAACGTCTTCTGGTTTCGGGACAACATCCAATTTGAACAATTT</left_flank>
        <right_flank>TTCGATGAGGCTTCAATAGAGTCGCCGATTCGAGAATAAATTGGATCAGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCCATTTGGATTCCTAAAAACCAAATTTTGGGTTGAGCATTGTTAATACCTAGCCACTAACCCGTAATTGGAAAAATTGGAAAACCAAGTTGCCATACTTTCCATCATTTGAAAATCGTTTTCAGTTGGTACAAACGTATCATATCCACCGCTCCCGAATATGTATCGAAAATCGTTTCCATGGCTGGATGCTTTAAAATCAAGAAGATTACCTAGAGGACCATAGCCATCCGGGTTACAATAATCGAATGAATACAAGAAAACATGATTTCCAGATTTTGAAGCAGCTTGAGCCGAATTTAGAATACCAACATTGAAAACTGCATCACCAAGGAACTGAAAACTATGACTGATATTGTTTAGACGTTTAAAGCAAACCTCAATAAATCTCTTCCTGACAGCTGCCACATCGGATTTGTCTATTCCTTCTGAATACCAATTCTCCAACTTTTCGTGAACGTCTTCTGGTTTCGGGACAACATCCAATTTGAACAATTTCTTCGATGAGGCTTCAATAGAGTCGCCGATTCGAGAATAAATTGGATCAGGAACAGCTGAATTTGAAGATGTAAAAATGAAATATATTGAAAACTCACCCATGATAAGTCCTTCAAACTCAGTTCTCCCAAAAATAAAATTTTTTTTGGGTGCATTTTTTCTCAATTCATCCAACGATTCTGTGAAGAAATCACCGTCCGCATTAGGTCCACATGACATAAATCCTGATGGGGAGAACTTGAAGGTACTCAATTTATTCAAAAGCTCAATGCTTTGCTCTTGATACCATTTCATTAGATTAGAAGAGTCTGAAACCTATTTGTAGTTAAGAACGACTATAAAGTTAAGCTTTCACCAGTTTGTGAACATCCATTTTCTATCGCAAACTCTTTGAAAATAAGTGCTTGATTCGCTTTGGATCGACATGCCATTTCACAATCAGCGCTTCCAGACATTGCTATGCATTTTTGGAAGAGGTCTGAATTTCAACTAAAATGTGAA</canonical>
            <polymorphic>TCCCATTTGGATTCCTAAAAACCAAATTTTGGGTTGAGCATTGTTAATACCTAGCCACTAACCCGTAATTGGAAAAATTGGAAAACCAAGTTGCCATACTTTCCATCATTTGAAAATCGTTTTCAGTTGGTACAAACGTATCATATCCACCGCTCCCGAATATGTATCGAAAATCGTTTCCATGGCTGGATGCTTTAAAATCAAGAAGATTACCTAGAGGACCATAGCCATCCGGGTTACAATAATCGAATGAATACAAGAAAACATGATTTCCAGATTTTGAAGCAGCTTGAGCCGAATTTAGAATACCAACATTGAAAACTGCATCACCAAGGAACTGAAAACTATGACTGATATTGTTTAGACGTTTAAAGCAAACCTCAATAAATCTCTTCCTGACAGCTGCCACATCGGATTTGTCTATTCCTTCTGAATACCAATTCTCCAACTTTTCGTGAACGTCTTCTGGTTTCGGGACAACATCCAATTTGAACAATTTYTTCGATGAGGCTTCAATAGAGTCGCCGATTCGAGAATAAATTGGATCAGGAACAGCTGAATTTGAAGATGTAAAAATGAAATATATTGAAAACTCACCCATGATAAGTCCTTCAAACTCAGTTCTCCCAAAAATAAAATTTTTTTTGGGTGCATTTTTTCTCAATTCATCCAACGATTCTGTGAAGAAATCACCGTCCGCATTAGGTCCACATGACATAAATCCTGATGGGGAGAACTTGAAGGTACTCAATTTATTCAAAAGCTCAATGCTTTGCTCTTGATACCATTTCATTAGATTAGAAGAGTCTGAAACCTATTTGTAGTTAAGAACGACTATAAAGTTAAGCTTTCACCAGTTTGTGAACATCCATTTTCTATCGCAAACTCTTTGAAAATAAGTGCTTGATTCGCTTTGGATCGACATGCCATTTCACAATCAGCGCTTCCAGACATTGCTATGCATTTTTGGAAGAGGTCTGAATTTCAACTAAAATGTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>505 461 34</canonical_bands>
                <polymorphic_bands>539 461</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCTCAATAAATCTCTTCCTGAC</pcr_primer_p1>
		<pcr_primer_p2>AACTGAGTTTGAAGGACTTATCA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACCTCAATAAATCTCTTCCTGACAGCTGCCACATCGGATTTGTCTATTCCTTCTGAATACCAATTCTCCAACTTTTCGTGAACGTCTTCTGGTTTCGGGACAACATCCAATTTGAACAATTTCTTCGATGAGGCTTCAATAGAGTCGCCGATTCGAGAATAAATTGGATCAGGAACAGCTGAATTTGAAGATGTAAAAATGAAATATATTGAAAACTCACCCATGATAAGTCCTTCAAACTCAGTT</canonical_amplicon>
		<polymorphic_amplicon>ACCTCAATAAATCTCTTCCTGACAGCTGCCACATCGGATTTGTCTATTCCTTCTGAATACCAATTCTCCAACTTTTCGTGAACGTCTTCTGGTTTCGGGACAACATCCAATTTGAACAATTTYTTCGATGAGGCTTCAATAGAGTCGCCGATTCGAGAATAAATTGGATCAGGAACAGCTGAATTTGAAGATGTAAAAATGAAATATATTGAAAACTCACCCATGATAAGTCCTTCAAACTCAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9836</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>765547</contig_pos>
        <strand>+</strand>
        <context>CGTCTTCTGG[G/T]TTCGGGACAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTATTCCTTCTGAATACCAATTCTCCAACTTTTCGTGAACGTCTTCTGG</left_flank>
        <right_flank>TTCGGGACAACATCCAATTTGAACAATTTCTTCGATGAGGCTTCAATAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAGTTTTTCCACTTTCCGACGACATCATTCCCATTTGGATTCCTAAAAACCAAATTTTGGGTTGAGCATTGTTAATACCTAGCCACTAACCCGTAATTGGAAAAATTGGAAAACCAAGTTGCCATACTTTCCATCATTTGAAAATCGTTTTCAGTTGGTACAAACGTATCATATCCACCGCTCCCGAATATGTATCGAAAATCGTTTCCATGGCTGGATGCTTTAAAATCAAGAAGATTACCTAGAGGACCATAGCCATCCGGGTTACAATAATCGAATGAATACAAGAAAACATGATTTCCAGATTTTGAAGCAGCTTGAGCCGAATTTAGAATACCAACATTGAAAACTGCATCACCAAGGAACTGAAAACTATGACTGATATTGTTTAGACGTTTAAAGCAAACCTCAATAAATCTCTTCCTGACAGCTGCCACATCGGATTTGTCTATTCCTTCTGAATACCAATTCTCCAACTTTTCGTGAACGTCTTCTGGTTTCGGGACAACATCCAATTTGAACAATTTCTTCGATGAGGCTTCAATAGAGTCGCCGATTCGAGAATAAATTGGATCAGGAACAGCTGAATTTGAAGATGTAAAAATGAAATATATTGAAAACTCACCCATGATAAGTCCTTCAAACTCAGTTCTCCCAAAAATAAAATTTTTTTTGGGTGCATTTTTTCTCAATTCATCCAACGATTCTGTGAAGAAATCACCGTCCGCATTAGGTCCACATGACATAAATCCTGATGGGGAGAACTTGAAGGTACTCAATTTATTCAAAAGCTCAATGCTTTGCTCTTGATACCATTTCATTAGATTAGAAGAGTCTGAAACCTATTTGTAGTTAAGAACGACTATAAAGTTAAGCTTTCACCAGTTTGTGAACATCCATTTTCTATCGCAAACTCTTTGAAAATAAGTGCTTGATTCGCTTTGGATCGACATGCCATTTCACAATCAGCGCTTCCAGACATTGCTATGCATTTTTGG</canonical>
            <polymorphic>TATAGTTTTTCCACTTTCCGACGACATCATTCCCATTTGGATTCCTAAAAACCAAATTTTGGGTTGAGCATTGTTAATACCTAGCCACTAACCCGTAATTGGAAAAATTGGAAAACCAAGTTGCCATACTTTCCATCATTTGAAAATCGTTTTCAGTTGGTACAAACGTATCATATCCACCGCTCCCGAATATGTATCGAAAATCGTTTCCATGGCTGGATGCTTTAAAATCAAGAAGATTACCTAGAGGACCATAGCCATCCGGGTTACAATAATCGAATGAATACAAGAAAACATGATTTCCAGATTTTGAAGCAGCTTGAGCCGAATTTAGAATACCAACATTGAAAACTGCATCACCAAGGAACTGAAAACTATGACTGATATTGTTTAGACGTTTAAAGCAAACCTCAATAAATCTCTTCCTGACAGCTGCCACATCGGATTTGTCTATTCCTTCTGAATACCAATTCTCCAACTTTTCGTGAACGTCTTCTGGKTTCGGGACAACATCCAATTTGAACAATTTCTTCGATGAGGCTTCAATAGAGTCGCCGATTCGAGAATAAATTGGATCAGGAACAGCTGAATTTGAAGATGTAAAAATGAAATATATTGAAAACTCACCCATGATAAGTCCTTCAAACTCAGTTCTCCCAAAAATAAAATTTTTTTTGGGTGCATTTTTTCTCAATTCATCCAACGATTCTGTGAAGAAATCACCGTCCGCATTAGGTCCACATGACATAAATCCTGATGGGGAGAACTTGAAGGTACTCAATTTATTCAAAAGCTCAATGCTTTGCTCTTGATACCATTTCATTAGATTAGAAGAGTCTGAAACCTATTTGTAGTTAAGAACGACTATAAAGTTAAGCTTTCACCAGTTTGTGAACATCCATTTTCTATCGCAAACTCTTTGAAAATAAGTGCTTGATTCGCTTTGGATCGACATGCCATTTCACAATCAGCGCTTCCAGACATTGCTATGCATTTTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTCAATAAATCTCTTCCTGAC</pcr_primer_p1>
		<pcr_primer_p2>AACTGAGTTTGAAGGACTTATCA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACCTCAATAAATCTCTTCCTGACAGCTGCCACATCGGATTTGTCTATTCCTTCTGAATACCAATTCTCCAACTTTTCGTGAACGTCTTCTGGTTTCGGGACAACATCCAATTTGAACAATTTCTTCGATGAGGCTTCAATAGAGTCGCCGATTCGAGAATAAATTGGATCAGGAACAGCTGAATTTGAAGATGTAAAAATGAAATATATTGAAAACTCACCCATGATAAGTCCTTCAAACTCAGTT</canonical_amplicon>
		<polymorphic_amplicon>ACCTCAATAAATCTCTTCCTGACAGCTGCCACATCGGATTTGTCTATTCCTTCTGAATACCAATTCTCCAACTTTTCGTGAACGTCTTCTGGKTTCGGGACAACATCCAATTTGAACAATTTCTTCGATGAGGCTTCAATAGAGTCGCCGATTCGAGAATAAATTGGATCAGGAACAGCTGAATTTGAAGATGTAAAAATGAAATATATTGAAAACTCACCCATGATAAGTCCTTCAAACTCAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9837</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>765529</contig_pos>
        <strand>+</strand>
        <context>TCTCCAACTT[A/T]TCGTGAACGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTGCCACATCGGATTTGTCTATTCCTTCTGAATACCAATTCTCCAACTT</left_flank>
        <right_flank>TCGTGAACGTCTTCTGGTTTCGGGACAACATCCAATTTGAACAATTTCTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCAGGCAATTCGATGGTATAGTTTTTCCACTTTCCGACGACATCATTCCCATTTGGATTCCTAAAAACCAAATTTTGGGTTGAGCATTGTTAATACCTAGCCACTAACCCGTAATTGGAAAAATTGGAAAACCAAGTTGCCATACTTTCCATCATTTGAAAATCGTTTTCAGTTGGTACAAACGTATCATATCCACCGCTCCCGAATATGTATCGAAAATCGTTTCCATGGCTGGATGCTTTAAAATCAAGAAGATTACCTAGAGGACCATAGCCATCCGGGTTACAATAATCGAATGAATACAAGAAAACATGATTTCCAGATTTTGAAGCAGCTTGAGCCGAATTTAGAATACCAACATTGAAAACTGCATCACCAAGGAACTGAAAACTATGACTGATATTGTTTAGACGTTTAAAGCAAACCTCAATAAATCTCTTCCTGACAGCTGCCACATCGGATTTGTCTATTCCTTCTGAATACCAATTCTCCAACTTTTCGTGAACGTCTTCTGGTTTCGGGACAACATCCAATTTGAACAATTTCTTCGATGAGGCTTCAATAGAGTCGCCGATTCGAGAATAAATTGGATCAGGAACAGCTGAATTTGAAGATGTAAAAATGAAATATATTGAAAACTCACCCATGATAAGTCCTTCAAACTCAGTTCTCCCAAAAATAAAATTTTTTTTGGGTGCATTTTTTCTCAATTCATCCAACGATTCTGTGAAGAAATCACCGTCCGCATTAGGTCCACATGACATAAATCCTGATGGGGAGAACTTGAAGGTACTCAATTTATTCAAAAGCTCAATGCTTTGCTCTTGATACCATTTCATTAGATTAGAAGAGTCTGAAACCTATTTGTAGTTAAGAACGACTATAAAGTTAAGCTTTCACCAGTTTGTGAACATCCATTTTCTATCGCAAACTCTTTGAAAATAAGTGCTTGATTCGCTTTGGATCGACATGCCATTTCACAATCAGCGCTTCCAGAC</canonical>
            <polymorphic>ATCCAGGCAATTCGATGGTATAGTTTTTCCACTTTCCGACGACATCATTCCCATTTGGATTCCTAAAAACCAAATTTTGGGTTGAGCATTGTTAATACCTAGCCACTAACCCGTAATTGGAAAAATTGGAAAACCAAGTTGCCATACTTTCCATCATTTGAAAATCGTTTTCAGTTGGTACAAACGTATCATATCCACCGCTCCCGAATATGTATCGAAAATCGTTTCCATGGCTGGATGCTTTAAAATCAAGAAGATTACCTAGAGGACCATAGCCATCCGGGTTACAATAATCGAATGAATACAAGAAAACATGATTTCCAGATTTTGAAGCAGCTTGAGCCGAATTTAGAATACCAACATTGAAAACTGCATCACCAAGGAACTGAAAACTATGACTGATATTGTTTAGACGTTTAAAGCAAACCTCAATAAATCTCTTCCTGACAGCTGCCACATCGGATTTGTCTATTCCTTCTGAATACCAATTCTCCAACTTWTCGTGAACGTCTTCTGGTTTCGGGACAACATCCAATTTGAACAATTTCTTCGATGAGGCTTCAATAGAGTCGCCGATTCGAGAATAAATTGGATCAGGAACAGCTGAATTTGAAGATGTAAAAATGAAATATATTGAAAACTCACCCATGATAAGTCCTTCAAACTCAGTTCTCCCAAAAATAAAATTTTTTTTGGGTGCATTTTTTCTCAATTCATCCAACGATTCTGTGAAGAAATCACCGTCCGCATTAGGTCCACATGACATAAATCCTGATGGGGAGAACTTGAAGGTACTCAATTTATTCAAAAGCTCAATGCTTTGCTCTTGATACCATTTCATTAGATTAGAAGAGTCTGAAACCTATTTGTAGTTAAGAACGACTATAAAGTTAAGCTTTCACCAGTTTGTGAACATCCATTTTCTATCGCAAACTCTTTGAAAATAAGTGCTTGATTCGCTTTGGATCGACATGCCATTTCACAATCAGCGCTTCCAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTCAATAAATCTCTTCCTGAC</pcr_primer_p1>
		<pcr_primer_p2>AACTGAGTTTGAAGGACTTATCA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACCTCAATAAATCTCTTCCTGACAGCTGCCACATCGGATTTGTCTATTCCTTCTGAATACCAATTCTCCAACTTTTCGTGAACGTCTTCTGGTTTCGGGACAACATCCAATTTGAACAATTTCTTCGATGAGGCTTCAATAGAGTCGCCGATTCGAGAATAAATTGGATCAGGAACAGCTGAATTTGAAGATGTAAAAATGAAATATATTGAAAACTCACCCATGATAAGTCCTTCAAACTCAGTT</canonical_amplicon>
		<polymorphic_amplicon>ACCTCAATAAATCTCTTCCTGACAGCTGCCACATCGGATTTGTCTATTCCTTCTGAATACCAATTCTCCAACTTWTCGTGAACGTCTTCTGGTTTCGGGACAACATCCAATTTGAACAATTTCTTCGATGAGGCTTCAATAGAGTCGCCGATTCGAGAATAAATTGGATCAGGAACAGCTGAATTTGAAGATGTAAAAATGAAATATATTGAAAACTCACCCATGATAAGTCCTTCAAACTCAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9838</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>765443</contig_pos>
        <strand>+</strand>
        <context>ATTGTTTAGA[C/T]GTTTAAAGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAAACTGCATCACCAAGGAACTGAAAACTATGACTGATATTGTTTAGA</left_flank>
        <right_flank>GTTTAAAGCAAACCTCAATAAATCTCTTCCTGACAGCTGCCACATCGGAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTCCAATTGTCCTCAACTTTTTCAATCGATTATTCAAAATATCATCTTCTATTCGGCTTGTTAGATAATCAATTTTGAAATAATATCCAGGCAATTCGATGGTATAGTTTTTCCACTTTCCGACGACATCATTCCCATTTGGATTCCTAAAAACCAAATTTTGGGTTGAGCATTGTTAATACCTAGCCACTAACCCGTAATTGGAAAAATTGGAAAACCAAGTTGCCATACTTTCCATCATTTGAAAATCGTTTTCAGTTGGTACAAACGTATCATATCCACCGCTCCCGAATATGTATCGAAAATCGTTTCCATGGCTGGATGCTTTAAAATCAAGAAGATTACCTAGAGGACCATAGCCATCCGGGTTACAATAATCGAATGAATACAAGAAAACATGATTTCCAGATTTTGAAGCAGCTTGAGCCGAATTTAGAATACCAACATTGAAAACTGCATCACCAAGGAACTGAAAACTATGACTGATATTGTTTAGACGTTTAAAGCAAACCTCAATAAATCTCTTCCTGACAGCTGCCACATCGGATTTGTCTATTCCTTCTGAATACCAATTCTCCAACTTTTCGTGAACGTCTTCTGGTTTCGGGACAACATCCAATTTGAACAATTTCTTCGATGAGGCTTCAATAGAGTCGCCGATTCGAGAATAAATTGGATCAGGAACAGCTGAATTTGAAGATGTAAAAATGAAATATATTGAAAACTCACCCATGATAAGTCCTTCAAACTCAGTTCTCCCAAAAATAAAATTTTTTTTGGGTGCATTTTTTCTCAATTCATCCAACGATTCTGTGAAGAAATCACCGTCCGCATTAGGTCCACATGACATAAATCCTGATGGGGAGAACTTGAAGGTACTCAATTTATTCAAAAGCTCAATGCTTTGCTCTTGATACCATTTCATTAGATTAGAAGAGTCTGAAACCTATTTGTAGTTAAGAACGACTATAAAGTTAAGCTTTCACCAGTTTGTGAAC</canonical>
            <polymorphic>TCTTCCAATTGTCCTCAACTTTTTCAATCGATTATTCAAAATATCATCTTCTATTCGGCTTGTTAGATAATCAATTTTGAAATAATATCCAGGCAATTCGATGGTATAGTTTTTCCACTTTCCGACGACATCATTCCCATTTGGATTCCTAAAAACCAAATTTTGGGTTGAGCATTGTTAATACCTAGCCACTAACCCGTAATTGGAAAAATTGGAAAACCAAGTTGCCATACTTTCCATCATTTGAAAATCGTTTTCAGTTGGTACAAACGTATCATATCCACCGCTCCCGAATATGTATCGAAAATCGTTTCCATGGCTGGATGCTTTAAAATCAAGAAGATTACCTAGAGGACCATAGCCATCCGGGTTACAATAATCGAATGAATACAAGAAAACATGATTTCCAGATTTTGAAGCAGCTTGAGCCGAATTTAGAATACCAACATTGAAAACTGCATCACCAAGGAACTGAAAACTATGACTGATATTGTTTAGAYGTTTAAAGCAAACCTCAATAAATCTCTTCCTGACAGCTGCCACATCGGATTTGTCTATTCCTTCTGAATACCAATTCTCCAACTTTTCGTGAACGTCTTCTGGTTTCGGGACAACATCCAATTTGAACAATTTCTTCGATGAGGCTTCAATAGAGTCGCCGATTCGAGAATAAATTGGATCAGGAACAGCTGAATTTGAAGATGTAAAAATGAAATATATTGAAAACTCACCCATGATAAGTCCTTCAAACTCAGTTCTCCCAAAAATAAAATTTTTTTTGGGTGCATTTTTTCTCAATTCATCCAACGATTCTGTGAAGAAATCACCGTCCGCATTAGGTCCACATGACATAAATCCTGATGGGGAGAACTTGAAGGTACTCAATTTATTCAAAAGCTCAATGCTTTGCTCTTGATACCATTTCATTAGATTAGAAGAGTCTGAAACCTATTTGTAGTTAAGAACGACTATAAAGTTAAGCTTTCACCAGTTTGTGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>407 270 229 94</canonical_bands>
                <polymorphic_bands>407 323 270</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATGCTTTAAAATCAAGAAGAT</pcr_primer_p1>
		<pcr_primer_p2>TGGTATTCAGAAGGAATAGACAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGATGCTTTAAAATCAAGAAGATTACCTAGAGGACCATAGCCATCCGGGTTACAATAATCGAATGAATACAAGAAAACATGATTTCCAGATTTTGAAGCAGCTTGAGCCGAATTTAGAATACCAACATTGAAAACTGCATCACCAAGGAACTGAAAACTATGACTGATATTGTTTAGACGTTTAAAGCAAACCTCAATAAATCTCTTCCTGACAGCTGCCACATCGGATTTGTCTATTCCTTCTGAATACCA</canonical_amplicon>
		<polymorphic_amplicon>GGATGCTTTAAAATCAAGAAGATTACCTAGAGGACCATAGCCATCCGGGTTACAATAATCGAATGAATACAAGAAAACATGATTTCCAGATTTTGAAGCAGCTTGAGCCGAATTTAGAATACCAACATTGAAAACTGCATCACCAAGGAACTGAAAACTATGACTGATATTGTTTAGAYGTTTAAAGCAAACCTCAATAAATCTCTTCCTGACAGCTGCCACATCGGATTTGTCTATTCCTTCTGAATACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9839</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>780387</contig_pos>
        <strand>+</strand>
        <context>AATTTATTTT[A/C]TTTTAGCATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGGGTTTTCTCAGAAAGATATTAATTTATTGGGGTCTTCAAATTTATTTT</left_flank>
        <right_flank>TTTTAGCATGTACGGTTTTAATCTTGTTTCATAAAAATTCTGGCATCATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCTGGATCGGAACAAGATGAGTTACGTGAGAGTTACGAACGATGGAAGAGTGAGCAGGGAGAACAGTTCAACGAGCAGTTTCAACAACAAACAGCAATCATCAAGGAAGAATTCGTCAAAGCGGATCGTGATGATGAAATTGAGAAGCTGGAGCAACAAATTTCAGAAATCCAATCATTGGCTTCAGTTTTCTCGGAGAAGGTAAGGTTCTTCTTACTAAGAACTGTGAATTGATTTTCTTAATAAAATCATTTTTCAGATCATGGACCAAGAGCGAGACATCGATTTGATCAACGATCTGGCATTGCACACGTCAGAAAACCTCATCGATGGAAACGAATGGATTCGTAAAGCAATCACCAACTCGGCTTTCCAACGCGTCTGGTTCCTCTTCTGCATCGTTGTTCTAACTTTCACTCTTCTTTTCCTCGACTGGTACAATCCATAAGGGTTTTCTCAGAAAGATATTAATTTATTGGGGTCTTCAAATTTATTTTATTTTAGCATGTACGGTTTTAATCTTGTTTCATAAAAATTCTGGCATCATGGTGCAACTGTCGTTTTACGCCAAACATTTGTCGATGGGACGTGGTCCGTTTTGTTGCCAAACACTCCGACGAGAATCTTCTCGACGCTTCCCTTCTCCGTCAGCCAGTCCTTTATCAGTTTCCGATAACCTGAACATTTGGGAAGTTTCCAGAAAATAAAATAACGTATAAAGATCCTTACCTTCCAAATCAACTGCTGCTCCATTTTTATTGAAATTTCTGTCAATAAATTCCAATCCTTCTTTGCTCATTTTATTGGGATGTTTTTCATAATACTCGCGAATTTCTTTCGGTGTCACTTTTCCATCCTTATTCGAATCTCTAGCCTGAGTTTGTCATTTTAGATAGAAATCTCATTTTTCCACTATTTACCTTGAATTCGTTACTTATCACATCATCGAGTCGCTGGTCTGCCGTTTCAGCATTCCATGGATTCTTCTTTTGGGAAAT</canonical>
            <polymorphic>TTGCTGGATCGGAACAAGATGAGTTACGTGAGAGTTACGAACGATGGAAGAGTGAGCAGGGAGAACAGTTCAACGAGCAGTTTCAACAACAAACAGCAATCATCAAGGAAGAATTCGTCAAAGCGGATCGTGATGATGAAATTGAGAAGCTGGAGCAACAAATTTCAGAAATCCAATCATTGGCTTCAGTTTTCTCGGAGAAGGTAAGGTTCTTCTTACTAAGAACTGTGAATTGATTTTCTTAATAAAATCATTTTTCAGATCATGGACCAAGAGCGAGACATCGATTTGATCAACGATCTGGCATTGCACACGTCAGAAAACCTCATCGATGGAAACGAATGGATTCGTAAAGCAATCACCAACTCGGCTTTCCAACGCGTCTGGTTCCTCTTCTGCATCGTTGTTCTAACTTTCACTCTTCTTTTCCTCGACTGGTACAATCCATAAGGGTTTTCTCAGAAAGATATTAATTTATTGGGGTCTTCAAATTTATTTTMTTTTAGCATGTACGGTTTTAATCTTGTTTCATAAAAATTCTGGCATCATGGTGCAACTGTCGTTTTACGCCAAACATTTGTCGATGGGACGTGGTCCGTTTTGTTGCCAAACACTCCGACGAGAATCTTCTCGACGCTTCCCTTCTCCGTCAGCCAGTCCTTTATCAGTTTCCGATAACCTGAACATTTGGGAAGTTTCCAGAAAATAAAATAACGTATAAAGATCCTTACCTTCCAAATCAACTGCTGCTCCATTTTTATTGAAATTTCTGTCAATAAATTCCAATCCTTCTTTGCTCATTTTATTGGGATGTTTTTCATAATACTCGCGAATTTCTTTCGGTGTCACTTTTCCATCCTTATTCGAATCTCTAGCCTGAGTTTGTCATTTTAGATAGAAATCTCATTTTTCCACTATTTACCTTGAATTCGTTACTTATCACATCATCGAGTCGCTGGTCTGCCGTTTCAGCATTCCATGGATTCTTCTTTTGGGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACAATCCATAAGGGTTTTCTC</pcr_primer_p1>
		<pcr_primer_p2>ATGTTCAGGTTATCGGAAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTACAATCCATAAGGGTTTTCTCAGAAAGATATTAATTTATTGGGGTCTTCAAATTTATTTTATTTTAGCATGTACGGTTTTAATCTTGTTTCATAAAAATTCTGGCATCATGGTGCAACTGTCGTTTTACGCCAAACATTTGTCGATGGGACGTGGTCCGTTTTGTTGCCAAACACTCCGACGAGAATCTTCTCGACGCTTCCCTTCTCCGTCAGCCAGTCCTTTATCAGTTTCCGATAACCTGAACAT</canonical_amplicon>
		<polymorphic_amplicon>GTACAATCCATAAGGGTTTTCTCAGAAAGATATTAATTTATTGGGGTCTTCAAATTTATTTTMTTTTAGCATGTACGGTTTTAATCTTGTTTCATAAAAATTCTGGCATCATGGTGCAACTGTCGTTTTACGCCAAACATTTGTCGATGGGACGTGGTCCGTTTTGTTGCCAAACACTCCGACGAGAATCTTCTCGACGCTTCCCTTCTCCGTCAGCCAGTCCTTTATCAGTTTCCGATAACCTGAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9840</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>780455</contig_pos>
        <strand>+</strand>
        <context>TGTCGTTTTA[C/T]GCCAAACATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAATCTTGTTTCATAAAAATTCTGGCATCATGGTGCAACTGTCGTTTTA</left_flank>
        <right_flank>GCCAAACATTTGTCGATGGGACGTGGTCCGTTTTGTTGCCAAACACTCCG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAACGAGCAGTTTCAACAACAAACAGCAATCATCAAGGAAGAATTCGTCAAAGCGGATCGTGATGATGAAATTGAGAAGCTGGAGCAACAAATTTCAGAAATCCAATCATTGGCTTCAGTTTTCTCGGAGAAGGTAAGGTTCTTCTTACTAAGAACTGTGAATTGATTTTCTTAATAAAATCATTTTTCAGATCATGGACCAAGAGCGAGACATCGATTTGATCAACGATCTGGCATTGCACACGTCAGAAAACCTCATCGATGGAAACGAATGGATTCGTAAAGCAATCACCAACTCGGCTTTCCAACGCGTCTGGTTCCTCTTCTGCATCGTTGTTCTAACTTTCACTCTTCTTTTCCTCGACTGGTACAATCCATAAGGGTTTTCTCAGAAAGATATTAATTTATTGGGGTCTTCAAATTTATTTTATTTTAGCATGTACGGTTTTAATCTTGTTTCATAAAAATTCTGGCATCATGGTGCAACTGTCGTTTTACGCCAAACATTTGTCGATGGGACGTGGTCCGTTTTGTTGCCAAACACTCCGACGAGAATCTTCTCGACGCTTCCCTTCTCCGTCAGCCAGTCCTTTATCAGTTTCCGATAACCTGAACATTTGGGAAGTTTCCAGAAAATAAAATAACGTATAAAGATCCTTACCTTCCAAATCAACTGCTGCTCCATTTTTATTGAAATTTCTGTCAATAAATTCCAATCCTTCTTTGCTCATTTTATTGGGATGTTTTTCATAATACTCGCGAATTTCTTTCGGTGTCACTTTTCCATCCTTATTCGAATCTCTAGCCTGAGTTTGTCATTTTAGATAGAAATCTCATTTTTCCACTATTTACCTTGAATTCGTTACTTATCACATCATCGAGTCGCTGGTCTGCCGTTTCAGCATTCCATGGATTCTTCTTTTGGGAAATGACGATTCCAAAAAGAAGAACAAAAAGTAAGATCGTCGTCGTTGAAGTTTGGCGCATGACTGACTTCT</canonical>
            <polymorphic>TTCAACGAGCAGTTTCAACAACAAACAGCAATCATCAAGGAAGAATTCGTCAAAGCGGATCGTGATGATGAAATTGAGAAGCTGGAGCAACAAATTTCAGAAATCCAATCATTGGCTTCAGTTTTCTCGGAGAAGGTAAGGTTCTTCTTACTAAGAACTGTGAATTGATTTTCTTAATAAAATCATTTTTCAGATCATGGACCAAGAGCGAGACATCGATTTGATCAACGATCTGGCATTGCACACGTCAGAAAACCTCATCGATGGAAACGAATGGATTCGTAAAGCAATCACCAACTCGGCTTTCCAACGCGTCTGGTTCCTCTTCTGCATCGTTGTTCTAACTTTCACTCTTCTTTTCCTCGACTGGTACAATCCATAAGGGTTTTCTCAGAAAGATATTAATTTATTGGGGTCTTCAAATTTATTTTATTTTAGCATGTACGGTTTTAATCTTGTTTCATAAAAATTCTGGCATCATGGTGCAACTGTCGTTTTAYGCCAAACATTTGTCGATGGGACGTGGTCCGTTTTGTTGCCAAACACTCCGACGAGAATCTTCTCGACGCTTCCCTTCTCCGTCAGCCAGTCCTTTATCAGTTTCCGATAACCTGAACATTTGGGAAGTTTCCAGAAAATAAAATAACGTATAAAGATCCTTACCTTCCAAATCAACTGCTGCTCCATTTTTATTGAAATTTCTGTCAATAAATTCCAATCCTTCTTTGCTCATTTTATTGGGATGTTTTTCATAATACTCGCGAATTTCTTTCGGTGTCACTTTTCCATCCTTATTCGAATCTCTAGCCTGAGTTTGTCATTTTAGATAGAAATCTCATTTTTCCACTATTTACCTTGAATTCGTTACTTATCACATCATCGAGTCGCTGGTCTGCCGTTTCAGCATTCCATGGATTCTTCTTTTGGGAAATGACGATTCCAAAAAGAAGAACAAAAAGTAAGATCGTCGTCGTTGAAGTTTGGCGCATGACTGACTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACAATCCATAAGGGTTTTCTC</pcr_primer_p1>
		<pcr_primer_p2>ATGTTCAGGTTATCGGAAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTACAATCCATAAGGGTTTTCTCAGAAAGATATTAATTTATTGGGGTCTTCAAATTTATTTTATTTTAGCATGTACGGTTTTAATCTTGTTTCATAAAAATTCTGGCATCATGGTGCAACTGTCGTTTTACGCCAAACATTTGTCGATGGGACGTGGTCCGTTTTGTTGCCAAACACTCCGACGAGAATCTTCTCGACGCTTCCCTTCTCCGTCAGCCAGTCCTTTATCAGTTTCCGATAACCTGAACAT</canonical_amplicon>
		<polymorphic_amplicon>GTACAATCCATAAGGGTTTTCTCAGAAAGATATTAATTTATTGGGGTCTTCAAATTTATTTTATTTTAGCATGTACGGTTTTAATCTTGTTTCATAAAAATTCTGGCATCATGGTGCAACTGTCGTTTTAYGCCAAACATTTGTCGATGGGACGTGGTCCGTTTTGTTGCCAAACACTCCGACGAGAATCTTCTCGACGCTTCCCTTCTCCGTCAGCCAGTCCTTTATCAGTTTCCGATAACCTGAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9879</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>979874</contig_pos>
        <strand>+</strand>
        <context>CTCAGTCAAT[A/T]TTCATTCCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TACCCATCATGTTCTTATTCTACTCACTGACACGATCATTCTCAGTCAAT</left_flank>
        <right_flank>TTCATTCCACACCCCCCTTAATTCCGAATCTTAATTTATTCACCCTCGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATGCTTCGAATAGAGAGCTGCCGACAAGATATTTCGCCCTTCGAAGAGTGAGTGATTAGTAAAAAAGTGGTAAAAGAGTTTTATTTGCTTCAGATCTGAAAACATCCGTCGATCAAGCTACTCCAGTGGAAACGACGACATAGAAAAGGCTTTTCAAGGAAGTTTATCATGTTCGAATGGTAAAAAACATAGCAGATCCCGAAATCCATCCACAACTGAGAAAAATGACGATTTCGAAAGTGGAGACTTTTGGGACATCGTCGAATTCTAAGAAAACATCATATCAAACAACCCTATCCATCTACTCATTGATCATCAGTCATTCATTAAAAAAAGCTTCCCGTTTCCCTCGAAAAAATGTATCGGTACCCGCCTCCGTATGTGGCCTATAATTGGTTATATGTTAAACTGTATTTCCATTACTGATCGAATTCACTTCTGTTCTATTACCCATCATGTTCTTATTCTACTCACTGACACGATCATTCTCAGTCAATTTTCATTCCACACCCCCCTTAATTCCGAATCTTAATTTATTCACCCTCGATTCTCCGGGATGGGGAGAATGTCTCAGGAAAGCCACCCATCCCCAATAAATTATTACATAACTTTTATTATGTGTGTTATCAAAAAAAAAAAACAATAACTGATTTGTGATTCATATCTGAGCAATGTGTATCAAACCAAACTTTAATTTTGAAAATCCAGATGGGACTGAAAAAGAAAATAGTCTCCAAACTTGCAAAAATTGCTGATAACGATTGGATTCCCAACGAAGAGCATCTCACAGAGCTGGTTCATCTTCTGGATGATGCGAAGGATGATGTATGATCCCTATTTTCGATTCCAATAAAAAAAAGAAATTTCAGACGGAAACCCAGGAAAAAATTCGAAATGTCGATCTAAAAGTGTTGACTAGCTTGCTGACAGCCTACCGAGCCACATGTTGCGATCTAGATATTGGGATTTATCAAGTGTTGCAAACGCTCGAGAAGTTC</canonical>
            <polymorphic>GTATGCTTCGAATAGAGAGCTGCCGACAAGATATTTCGCCCTTCGAAGAGTGAGTGATTAGTAAAAAAGTGGTAAAAGAGTTTTATTTGCTTCAGATCTGAAAACATCCGTCGATCAAGCTACTCCAGTGGAAACGACGACATAGAAAAGGCTTTTCAAGGAAGTTTATCATGTTCGAATGGTAAAAAACATAGCAGATCCCGAAATCCATCCACAACTGAGAAAAATGACGATTTCGAAAGTGGAGACTTTTGGGACATCGTCGAATTCTAAGAAAACATCATATCAAACAACCCTATCCATCTACTCATTGATCATCAGTCATTCATTAAAAAAAGCTTCCCGTTTCCCTCGAAAAAATGTATCGGTACCCGCCTCCGTATGTGGCCTATAATTGGTTATATGTTAAACTGTATTTCCATTACTGATCGAATTCACTTCTGTTCTATTACCCATCATGTTCTTATTCTACTCACTGACACGATCATTCTCAGTCAATWTTCATTCCACACCCCCCTTAATTCCGAATCTTAATTTATTCACCCTCGATTCTCCGGGATGGGGAGAATGTCTCAGGAAAGCCACCCATCCCCAATAAATTATTACATAACTTTTATTATGTGTGTTATCAAAAAAAAAAAACAATAACTGATTTGTGATTCATATCTGAGCAATGTGTATCAAACCAAACTTTAATTTTGAAAATCCAGATGGGACTGAAAAAGAAAATAGTCTCCAAACTTGCAAAAATTGCTGATAACGATTGGATTCCCAACGAAGAGCATCTCACAGAGCTGGTTCATCTTCTGGATGATGCGAAGGATGATGTATGATCCCTATTTTCGATTCCAATAAAAAAAAGAAATTTCAGACGGAAACCCAGGAAAAAATTCGAAATGTCGATCTAAAAGTGTTGACTAGCTTGCTGACAGCCTACCGAGCCACATGTTGCGATCTAGATATTGGGATTTATCAAGTGTTGCAAACGCTCGAGAAGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>265 127 115 112 97 65 65 54 39 25 23 13</canonical_bands>
                <polymorphic_bands>265 127 115 112 97 88 65 54 39 25 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTGTTCTATTACCCATCATGT</pcr_primer_p1>
		<pcr_primer_p2>GTTTGATACACATTGCTCAGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTCTGTTCTATTACCCATCATGTTCTTATTCTACTCACTGACACGATCATTCTCAGTCAATTTTCATTCCACACCCCCCTTAATTCCGAATCTTAATTTATTCACCCTCGATTCTCCGGGATGGGGAGAATGTCTCAGGAAAGCCACCCATCCCCAATAAATTATTACATAACTTTTATTATGTGTGTTATCAAAAAAAAAAAACAATAACTGATTTGTGATTCATATCTGAGCAATGTGTATCAAAC</canonical_amplicon>
		<polymorphic_amplicon>TTCTGTTCTATTACCCATCATGTTCTTATTCTACTCACTGACACGATCATTCTCAGTCAATWTTCATTCCACACCCCCCTTAATTCCGAATCTTAATTTATTCACCCTCGATTCTCCGGGATGGGGAGAATGTCTCAGGAAAGCCACCCATCCCCAATAAATTATTACATAACTTTTATTATGTGTGTTATCAAAAAAAAAAAACAATAACTGATTTGTGATTCATATCTGAGCAATGTGTATCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9880</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>982634</contig_pos>
        <strand>+</strand>
        <context>GATTCTCTAG[C/T]AAGTCGACTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAGCCAATGGAGGATCCATTTTTGTCATTACAAGATTTGGATTCTCTAG</left_flank>
        <right_flank>AAGTCGACTTTGACACCTTTTGTGAGTAGAAACTGTTGAAAAAGACCGTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGGGCAGTGGGCCTCCATAGGGAGCTGGTGCACAGTCGCAGGATTGAGATTTCCACATAGTTGCCCAATCCGGATGCCATGAATACATGTGCTGGACTGCATCAAAACCGTCGAGCATTCCTGAAAACCATTCTCAATACTCTCTAACTTGAAAGATCTTTCAACTTACCTTTACAACTGAGAGTTCTTTCAGATCCAACAGGAACTTTGAAATATTTACAAAACCATTTGAATGCCTTGATTCTTCTTGATTCTCCGGGACCTCCTGGTTCATCTGGATCCTCACCTCCGCACTCGTTATTGATTATTAGACTTGTTGGTCCAAAAATCGCATCTCGGTATCCAGCTCTTCGATTTTTTTTGGATGGTTCCCAATCTCCAGTTACAATTTGATGCATAGATGGTTTCGGGGGTTGAGGTGTCATATAAAACCAAAGAGAAGCCATCATAGCCAATGGAGGATCCATTTTTGTCATTACAAGATTTGGATTCTCTAGCAAGTCGACTTTGACACCTTTTGTGAGTAGAAACTGTTGAAAAAGACCGTAGTTGTAGTTCCATGAGAGTTGAAGAGCACCTCGTCCAAAATAACATCCTTTGTGATAATCTTGGTCCGCATGAGATTCGATATCAGAATTACATGGATACCAGAAATCCAACATTGGATCACTCTTACAGTATCTTCCCTCTTCCACGCAGCGTTTTCCGTCGGCTGGTGAGAATCCAGGAGATGTCGGCGAAAGGAACGAAGAGTTTGGTCCTCGTTCAAACCAATTATAGAATCCACCTCGATAGAAACATTCATGAGCTTGTTCCAGGGTTAGGTCGGTGTTGCTGGAAAAATGAACAATTTTCAAATTTCAAAAAAGAATGATTTGAGCAATTTGAGTAATTGAATTTACCGAAAAAAAACCTGTATTAGAAGGGCCGGCCCTTCTATTACAGGAGCCTTACAATTAAAGGGCGCTCTTCTATTGTTCCGGCCAATTTTTTTTTCA</canonical>
            <polymorphic>ATAGGGCAGTGGGCCTCCATAGGGAGCTGGTGCACAGTCGCAGGATTGAGATTTCCACATAGTTGCCCAATCCGGATGCCATGAATACATGTGCTGGACTGCATCAAAACCGTCGAGCATTCCTGAAAACCATTCTCAATACTCTCTAACTTGAAAGATCTTTCAACTTACCTTTACAACTGAGAGTTCTTTCAGATCCAACAGGAACTTTGAAATATTTACAAAACCATTTGAATGCCTTGATTCTTCTTGATTCTCCGGGACCTCCTGGTTCATCTGGATCCTCACCTCCGCACTCGTTATTGATTATTAGACTTGTTGGTCCAAAAATCGCATCTCGGTATCCAGCTCTTCGATTTTTTTTGGATGGTTCCCAATCTCCAGTTACAATTTGATGCATAGATGGTTTCGGGGGTTGAGGTGTCATATAAAACCAAAGAGAAGCCATCATAGCCAATGGAGGATCCATTTTTGTCATTACAAGATTTGGATTCTCTAGYAAGTCGACTTTGACACCTTTTGTGAGTAGAAACTGTTGAAAAAGACCGTAGTTGTAGTTCCATGAGAGTTGAAGAGCACCTCGTCCAAAATAACATCCTTTGTGATAATCTTGGTCCGCATGAGATTCGATATCAGAATTACATGGATACCAGAAATCCAACATTGGATCACTCTTACAGTATCTTCCCTCTTCCACGCAGCGTTTTCCGTCGGCTGGTGAGAATCCAGGAGATGTCGGCGAAAGGAACGAAGAGTTTGGTCCTCGTTCAAACCAATTATAGAATCCACCTCGATAGAAACATTCATGAGCTTGTTCCAGGGTTAGGTCGGTGTTGCTGGAAAAATGAACAATTTTCAAATTTCAAAAAAGAATGATTTGAGCAATTTGAGTAATTGAATTTACCGAAAAAAAACCTGTATTAGAAGGGCCGGCCCTTCTATTACAGGAGCCTTACAATTAAAGGGCGCTCTTCTATTGTTCCGGCCAATTTTTTTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGTGTCATATAAAACCAAAGA</pcr_primer_p1>
		<pcr_primer_p2>TCTGGTATCCATGTAATTCTGAT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GAGGTGTCATATAAAACCAAAGAGAAGCCATCATAGCCAATGGAGGATCCATTTTTGTCATTACAAGATTTGGATTCTCTAGCAAGTCGACTTTGACACCTTTTGTGAGTAGAAACTGTTGAAAAAGACCGTAGTTGTAGTTCCATGAGAGTTGAAGAGCACCTCGTCCAAAATAACATCCTTTGTGATAATCTTGGTCCGCATGAGATTCGATATCAGAATTACATGGATACCAGA</canonical_amplicon>
		<polymorphic_amplicon>GAGGTGTCATATAAAACCAAAGAGAAGCCATCATAGCCAATGGAGGATCCATTTTTGTCATTACAAGATTTGGATTCTCTAGYAAGTCGACTTTGACACCTTTTGTGAGTAGAAACTGTTGAAAAAGACCGTAGTTGTAGTTCCATGAGAGTTGAAGAGCACCTCGTCCAAAATAACATCCTTTGTGATAATCTTGGTCCGCATGAGATTCGATATCAGAATTACATGGATACCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9881</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>982526</contig_pos>
        <strand></strand>
        <context>CAGTTACAAT[T/C]TGATGCATAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TATCCAGCTCTTCGATTTTTTTTGGATGGTTCCCAATCTCCAGTTACAAT</left_flank>
        <right_flank>TGATGCATAGATGGTTTCGGGGGTTGAGGTGTCATATAAAACCAAAGAGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCATCCAAACGAAACGTTTCTGGACTCTCATACATGCTGTACACACATCGTAGTCGATTCCGATCGTTTTGTTTTGTGAATTCGTGGGGATAAAGTTTGGGATCATAATAGGGCAGTGGGCCTCCATAGGGAGCTGGTGCACAGTCGCAGGATTGAGATTTCCACATAGTTGCCCAATCCGGATGCCATGAATACATGTGCTGGACTGCATCAAAACCGTCGAGCATTCCTGAAAACCATTCTCAATACTCTCTAACTTGAAAGATCTTTCAACTTACCTTTACAACTGAGAGTTCTTTCAGATCCAACAGGAACTTTGAAATATTTACAAAACCATTTGAATGCCTTGATTCTTCTTGATTCTCCGGGACCTCCTGGTTCATCTGGATCCTCACCTCCGCACTCGTTATTGATTATTAGACTTGTTGGTCCAAAAATCGCATCTCGGTATCCAGCTCTTCGATTTTTTTTGGATGGTTCCCAATCTCCAGTTACAATTTGATGCATAGATGGTTTCGGGGGTTGAGGTGTCATATAAAACCAAAGAGAAGCCATCATAGCCAATGGAGGATCCATTTTTGTCATTACAAGATTTGGATTCTCTAGCAAGTCGACTTTGACACCTTTTGTGAGTAGAAACTGTTGAAAAAGACCGTAGTTGTAGTTCCATGAGAGTTGAAGAGCACCTCGTCCAAAATAACATCCTTTGTGATAATCTTGGTCCGCATGAGATTCGATATCAGAATTACATGGATACCAGAAATCCAACATTGGATCACTCTTACAGTATCTTCCCTCTTCCACGCAGCGTTTTCCGTCGGCTGGTGAGAATCCAGGAGATGTCGGCGAAAGGAACGAAGAGTTTGGTCCTCGTTCAAACCAATTATAGAATCCACCTCGATAGAAACATTCATGAGCTTGTTCCAGGGTTAGGTCGGTGTTGCTGGAAAAATGAACAATTTTCAAATTTCAAAAAAGAATGATTTGAGCAATTTGAGT</canonical>
            <polymorphic>ATCATCCAAACGAAACGTTTCTGGACTCTCATACATGCTGTACACACATCGTAGTCGATTCCGATCGTTTTGTTTTGTGAATTCGTGGGGATAAAGTTTGGGATCATAATAGGGCAGTGGGCCTCCATAGGGAGCTGGTGCACAGTCGCAGGATTGAGATTTCCACATAGTTGCCCAATCCGGATGCCATGAATACATGTGCTGGACTGCATCAAAACCGTCGAGCATTCCTGAAAACCATTCTCAATACTCTCTAACTTGAAAGATCTTTCAACTTACCTTTACAACTGAGAGTTCTTTCAGATCCAACAGGAACTTTGAAATATTTACAAAACCATTTGAATGCCTTGATTCTTCTTGATTCTCCGGGACCTCCTGGTTCATCTGGATCCTCACCTCCGCACTCGTTATTGATTATTAGACTTGTTGGTCCAAAAATCGCATCTCGGTATCCAGCTCTTCGATTTTTTTTGGATGGTTCCCAATCTCCAGTTACAATYTGATGCATAGATGGTTTCGGGGGTTGAGGTGTCATATAAAACCAAAGAGAAGCCATCATAGCCAATGGAGGATCCATTTTTGTCATTACAAGATTTGGATTCTCTAGCAAGTCGACTTTGACACCTTTTGTGAGTAGAAACTGTTGAAAAAGACCGTAGTTGTAGTTCCATGAGAGTTGAAGAGCACCTCGTCCAAAATAACATCCTTTGTGATAATCTTGGTCCGCATGAGATTCGATATCAGAATTACATGGATACCAGAAATCCAACATTGGATCACTCTTACAGTATCTTCCCTCTTCCACGCAGCGTTTTCCGTCGGCTGGTGAGAATCCAGGAGATGTCGGCGAAAGGAACGAAGAGTTTGGTCCTCGTTCAAACCAATTATAGAATCCACCTCGATAGAAACATTCATGAGCTTGTTCCAGGGTTAGGTCGGTGTTGCTGGAAAAATGAACAATTTTCAAATTTCAAAAAAGAATGATTTGAGCAATTTGAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>417 248 138 79 76 25 9 8</canonical_bands>
                <polymorphic_bands>665 138 79 76 25 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGCACTCGTTATTGATTATTAG</pcr_primer_p1>
		<pcr_primer_p2>TTTCAACAGTTTCTACTCACAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGCACTCGTTATTGATTATTAGACTTGTTGGTCCAAAAATCGCATCTCGGTATCCAGCTCTTCGATTTTTTTTGGATGGTTCCCAATCTCCAGTTACAATTTGATGCATAGATGGTTTCGGGGGTTGAGGTGTCATATAAAACCAAAGAGAAGCCATCATAGCCAATGGAGGATCCATTTTTGTCATTACAAGATTTGGATTCTCTAGCAAGTCGACTTTGACACCTTTTGTGAGTAGAAACTGTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>CGCACTCGTTATTGATTATTAGACTTGTTGGTCCAAAAATCGCATCTCGGTATCCAGCTCTTCGATTTTTTTTGGATGGTTCCCAATCTCCAGTTACAATYTGATGCATAGATGGTTTCGGGGGTTGAGGTGTCATATAAAACCAAAGAGAAGCCATCATAGCCAATGGAGGATCCATTTTTGTCATTACAAGATTTGGATTCTCTAGCAAGTCGACTTTGACACCTTTTGTGAGTAGAAACTGTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9882</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>982394</contig_pos>
        <strand>+</strand>
        <context>TTGATTCTCC[A/G]GGACCTCCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAAATATTTACAAAACCATTTGAATGCCTTGATTCTTCTTGATTCTCC</left_flank>
        <right_flank>GGACCTCCTGGTTCATCTGGATCCTCACCTCCGCACTCGTTATTGATTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTATGAATCCAGTTTATTTACAACTATAAGTTAGTTCGTGTTTCACAGAAACACAAATTCCATCGTCACCCTCTTATTCCAGATTTCGTCAAGCGAATTTTAGGTTTATGCTTCAAGCAAGGCGAGTTTCCATCATCCAAACGAAACGTTTCTGGACTCTCATACATGCTGTACACACATCGTAGTCGATTCCGATCGTTTTGTTTTGTGAATTCGTGGGGATAAAGTTTGGGATCATAATAGGGCAGTGGGCCTCCATAGGGAGCTGGTGCACAGTCGCAGGATTGAGATTTCCACATAGTTGCCCAATCCGGATGCCATGAATACATGTGCTGGACTGCATCAAAACCGTCGAGCATTCCTGAAAACCATTCTCAATACTCTCTAACTTGAAAGATCTTTCAACTTACCTTTACAACTGAGAGTTCTTTCAGATCCAACAGGAACTTTGAAATATTTACAAAACCATTTGAATGCCTTGATTCTTCTTGATTCTCCGGGACCTCCTGGTTCATCTGGATCCTCACCTCCGCACTCGTTATTGATTATTAGACTTGTTGGTCCAAAAATCGCATCTCGGTATCCAGCTCTTCGATTTTTTTTGGATGGTTCCCAATCTCCAGTTACAATTTGATGCATAGATGGTTTCGGGGGTTGAGGTGTCATATAAAACCAAAGAGAAGCCATCATAGCCAATGGAGGATCCATTTTTGTCATTACAAGATTTGGATTCTCTAGCAAGTCGACTTTGACACCTTTTGTGAGTAGAAACTGTTGAAAAAGACCGTAGTTGTAGTTCCATGAGAGTTGAAGAGCACCTCGTCCAAAATAACATCCTTTGTGATAATCTTGGTCCGCATGAGATTCGATATCAGAATTACATGGATACCAGAAATCCAACATTGGATCACTCTTACAGTATCTTCCCTCTTCCACGCAGCGTTTTCCGTCGGCTGGTGAGAATCCAGGAGATGTCGGCGAAAGGAACGAAGAGTTTGG</canonical>
            <polymorphic>CTTATGAATCCAGTTTATTTACAACTATAAGTTAGTTCGTGTTTCACAGAAACACAAATTCCATCGTCACCCTCTTATTCCAGATTTCGTCAAGCGAATTTTAGGTTTATGCTTCAAGCAAGGCGAGTTTCCATCATCCAAACGAAACGTTTCTGGACTCTCATACATGCTGTACACACATCGTAGTCGATTCCGATCGTTTTGTTTTGTGAATTCGTGGGGATAAAGTTTGGGATCATAATAGGGCAGTGGGCCTCCATAGGGAGCTGGTGCACAGTCGCAGGATTGAGATTTCCACATAGTTGCCCAATCCGGATGCCATGAATACATGTGCTGGACTGCATCAAAACCGTCGAGCATTCCTGAAAACCATTCTCAATACTCTCTAACTTGAAAGATCTTTCAACTTACCTTTACAACTGAGAGTTCTTTCAGATCCAACAGGAACTTTGAAATATTTACAAAACCATTTGAATGCCTTGATTCTTCTTGATTCTCCRGGACCTCCTGGTTCATCTGGATCCTCACCTCCGCACTCGTTATTGATTATTAGACTTGTTGGTCCAAAAATCGCATCTCGGTATCCAGCTCTTCGATTTTTTTTGGATGGTTCCCAATCTCCAGTTACAATTTGATGCATAGATGGTTTCGGGGGTTGAGGTGTCATATAAAACCAAAGAGAAGCCATCATAGCCAATGGAGGATCCATTTTTGTCATTACAAGATTTGGATTCTCTAGCAAGTCGACTTTGACACCTTTTGTGAGTAGAAACTGTTGAAAAAGACCGTAGTTGTAGTTCCATGAGAGTTGAAGAGCACCTCGTCCAAAATAACATCCTTTGTGATAATCTTGGTCCGCATGAGATTCGATATCAGAATTACATGGATACCAGAAATCCAACATTGGATCACTCTTACAGTATCTTCCCTCTTCCACGCAGCGTTTTCCGTCGGCTGGTGAGAATCCAGGAGATGTCGGCGAAAGGAACGAAGAGTTTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 296 93 90 19</canonical_bands>
                <polymorphic_bands>521 296 93 90</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 312 186</canonical_bands>
                <polymorphic_bands>688 312</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCAACAGGAACTTTGAAATA</pcr_primer_p1>
		<pcr_primer_p2>GGCTTCTCTTTGGTTTTATATG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATCCAACAGGAACTTTGAAATATTTACAAAACCATTTGAATGCCTTGATTCTTCTTGATTCTCCGGGACCTCCTGGTTCATCTGGATCCTCACCTCCGCACTCGTTATTGATTATTAGACTTGTTGGTCCAAAAATCGCATCTCGGTATCCAGCTCTTCGATTTTTTTTGGATGGTTCCCAATCTCCAGTTACAATTTGATGCATAGATGGTTTCGGGGGTTGAGGTGTCATATAAAACCAAAGAGAAGCC</canonical_amplicon>
		<polymorphic_amplicon>ATCCAACAGGAACTTTGAAATATTTACAAAACCATTTGAATGCCTTGATTCTTCTTGATTCTCCRGGACCTCCTGGTTCATCTGGATCCTCACCTCCGCACTCGTTATTGATTATTAGACTTGTTGGTCCAAAAATCGCATCTCGGTATCCAGCTCTTCGATTTTTTTTGGATGGTTCCCAATCTCCAGTTACAATTTGATGCATAGATGGTTTCGGGGGTTGAGGTGTCATATAAAACCAAAGAGAAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9883</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>982370</contig_pos>
        <strand>+</strand>
        <context>ACCATTTGAA[C/T]GCCTTGATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTCTTTCAGATCCAACAGGAACTTTGAAATATTTACAAAACCATTTGAA</left_flank>
        <right_flank>GCCTTGATTCTTCTTGATTCTCCGGGACCTCCTGGTTCATCTGGATCCTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGTTATTGTTGTTGAACCATTTCTTATGAATCCAGTTTATTTACAACTATAAGTTAGTTCGTGTTTCACAGAAACACAAATTCCATCGTCACCCTCTTATTCCAGATTTCGTCAAGCGAATTTTAGGTTTATGCTTCAAGCAAGGCGAGTTTCCATCATCCAAACGAAACGTTTCTGGACTCTCATACATGCTGTACACACATCGTAGTCGATTCCGATCGTTTTGTTTTGTGAATTCGTGGGGATAAAGTTTGGGATCATAATAGGGCAGTGGGCCTCCATAGGGAGCTGGTGCACAGTCGCAGGATTGAGATTTCCACATAGTTGCCCAATCCGGATGCCATGAATACATGTGCTGGACTGCATCAAAACCGTCGAGCATTCCTGAAAACCATTCTCAATACTCTCTAACTTGAAAGATCTTTCAACTTACCTTTACAACTGAGAGTTCTTTCAGATCCAACAGGAACTTTGAAATATTTACAAAACCATTTGAATGCCTTGATTCTTCTTGATTCTCCGGGACCTCCTGGTTCATCTGGATCCTCACCTCCGCACTCGTTATTGATTATTAGACTTGTTGGTCCAAAAATCGCATCTCGGTATCCAGCTCTTCGATTTTTTTTGGATGGTTCCCAATCTCCAGTTACAATTTGATGCATAGATGGTTTCGGGGGTTGAGGTGTCATATAAAACCAAAGAGAAGCCATCATAGCCAATGGAGGATCCATTTTTGTCATTACAAGATTTGGATTCTCTAGCAAGTCGACTTTGACACCTTTTGTGAGTAGAAACTGTTGAAAAAGACCGTAGTTGTAGTTCCATGAGAGTTGAAGAGCACCTCGTCCAAAATAACATCCTTTGTGATAATCTTGGTCCGCATGAGATTCGATATCAGAATTACATGGATACCAGAAATCCAACATTGGATCACTCTTACAGTATCTTCCCTCTTCCACGCAGCGTTTTCCGTCGGCTGGTGAGAATCCAGGAGATGT</canonical>
            <polymorphic>TATGTTATTGTTGTTGAACCATTTCTTATGAATCCAGTTTATTTACAACTATAAGTTAGTTCGTGTTTCACAGAAACACAAATTCCATCGTCACCCTCTTATTCCAGATTTCGTCAAGCGAATTTTAGGTTTATGCTTCAAGCAAGGCGAGTTTCCATCATCCAAACGAAACGTTTCTGGACTCTCATACATGCTGTACACACATCGTAGTCGATTCCGATCGTTTTGTTTTGTGAATTCGTGGGGATAAAGTTTGGGATCATAATAGGGCAGTGGGCCTCCATAGGGAGCTGGTGCACAGTCGCAGGATTGAGATTTCCACATAGTTGCCCAATCCGGATGCCATGAATACATGTGCTGGACTGCATCAAAACCGTCGAGCATTCCTGAAAACCATTCTCAATACTCTCTAACTTGAAAGATCTTTCAACTTACCTTTACAACTGAGAGTTCTTTCAGATCCAACAGGAACTTTGAAATATTTACAAAACCATTTGAAYGCCTTGATTCTTCTTGATTCTCCGGGACCTCCTGGTTCATCTGGATCCTCACCTCCGCACTCGTTATTGATTATTAGACTTGTTGGTCCAAAAATCGCATCTCGGTATCCAGCTCTTCGATTTTTTTTGGATGGTTCCCAATCTCCAGTTACAATTTGATGCATAGATGGTTTCGGGGGTTGAGGTGTCATATAAAACCAAAGAGAAGCCATCATAGCCAATGGAGGATCCATTTTTGTCATTACAAGATTTGGATTCTCTAGCAAGTCGACTTTGACACCTTTTGTGAGTAGAAACTGTTGAAAAAGACCGTAGTTGTAGTTCCATGAGAGTTGAAGAGCACCTCGTCCAAAATAACATCCTTTGTGATAATCTTGGTCCGCATGAGATTCGATATCAGAATTACATGGATACCAGAAATCCAACATTGGATCACTCTTACAGTATCTTCCCTCTTCCACGCAGCGTTTTCCGTCGGCTGGTGAGAATCCAGGAGATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGAATACATGTGCTGGACT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGGACCAACAAGTCTAATAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATGAATACATGTGCTGGACTGCATCAAAACCGTCGAGCATTCCTGAAAACCATTCTCAATACTCTCTAACTTGAAAGATCTTTCAACTTACCTTTACAACTGAGAGTTCTTTCAGATCCAACAGGAACTTTGAAATATTTACAAAACCATTTGAATGCCTTGATTCTTCTTGATTCTCCGGGACCTCCTGGTTCATCTGGATCCTCACCTCCGCACTCGTTATTGATTATTAGACTTGTTGGTCCAAAA</canonical_amplicon>
		<polymorphic_amplicon>CATGAATACATGTGCTGGACTGCATCAAAACCGTCGAGCATTCCTGAAAACCATTCTCAATACTCTCTAACTTGAAAGATCTTTCAACTTACCTTTACAACTGAGAGTTCTTTCAGATCCAACAGGAACTTTGAAATATTTACAAAACCATTTGAAYGCCTTGATTCTTCTTGATTCTCCGGGACCTCCTGGTTCATCTGGATCCTCACCTCCGCACTCGTTATTGATTATTAGACTTGTTGGTCCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9884</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>982246</contig_pos>
        <strand>+</strand>
        <context>CATCRAAACC[A/G]TCGAGCATTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTGCCCAATCCGGATGCCATGAATACATGTGCTGGACTGCATCAAAACC</left_flank>
        <right_flank>TCGAGCATTCCTGAAAACCATTCTCAATACTCTCTAACTTGAAAGATCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAGCAAGAGAAAGCACTGGCATCAATTAATCGAATCGAGAAAGCTATTGGGAAGAAGTGGAAGAGGAAGAAGAAGTTCAACGCCGAAGAATAGCCTTGTTTTGTTTTCATTGTTGATTTTGTTATGTTATTGTTGTTGAACCATTTCTTATGAATCCAGTTTATTTACAACTATAAGTTAGTTCGTGTTTCACAGAAACACAAATTCCATCGTCACCCTCTTATTCCAGATTTCGTCAAGCGAATTTTAGGTTTATGCTTCAAGCAAGGCGAGTTTCCATCATCCAAACGAAACGTTTCTGGACTCTCATACATGCTGTACACACATCGTAGTCGATTCCGATCGTTTTGTTTTGTGAATTCGTGGGGATAAAGTTTGGGATCATAATAGGGCAGTGGGCCTCCATAGGGAGCTGGTGCACAGTCGCAGGATTGAGATTTCCACATAGTTGCCCAATCCGGATGCCATGAATACATGTGCTGGACTGCATCAAAACCGTCGAGCATTCCTGAAAACCATTCTCAATACTCTCTAACTTGAAAGATCTTTCAACTTACCTTTACAACTGAGAGTTCTTTCAGATCCAACAGGAACTTTGAAATATTTACAAAACCATTTGAATGCCTTGATTCTTCTTGATTCTCCGGGACCTCCTGGTTCATCTGGATCCTCACCTCCGCACTCGTTATTGATTATTAGACTTGTTGGTCCAAAAATCGCATCTCGGTATCCAGCTCTTCGATTTTTTTTGGATGGTTCCCAATCTCCAGTTACAATTTGATGCATAGATGGTTTCGGGGGTTGAGGTGTCATATAAAACCAAAGAGAAGCCATCATAGCCAATGGAGGATCCATTTTTGTCATTACAAGATTTGGATTCTCTAGCAAGTCGACTTTGACACCTTTTGTGAGTAGAAACTGTTGAAAAAGACCGTAGTTGTAGTTCCATGAGAGTTGAAGAGCACCTCGTCCAAAATAACATCCTTTGTGATAATCTT</canonical>
            <polymorphic>GAGAGCAAGAGAAAGCACTGGCATCAATTAATCGAATCGAGAAAGCTATTGGGAAGAAGTGGAAGAGGAAGAAGAAGTTCAACGCCGAAGAATAGCCTTGTTTTGTTTTCATTGTTGATTTTGTTATGTTATTGTTGTTGAACCATTTCTTATGAATCCAGTTTATTTACAACTATAAGTTAGTTCGTGTTTCACAGAAACACAAATTCCATCGTCACCCTCTTATTCCAGATTTCGTCAAGCGAATTTTAGGTTTATGCTTCAAGCAAGGCGAGTTTCCATCATCCAAACGAAACGTTTCTGGACTCTCATACATGCTGTACACACATCGTAGTCGATTCCGATCGTTTTGTTTTGTGAATTCGTGGGGATAAAGTTTGGGATCATAATAGGGCAGTGGGCCTCCATAGGGAGCTGGTGCACAGTCGCAGGATTGAGATTTCCACATAGTTGCCCAATCCGGATGCCATGAATACATGTGCTGGACTGCATCAAAACCRTCGAGCATTCCTGAAAACCATTCTCAATACTCTCTAACTTGAAAGATCTTTCAACTTACCTTTACAACTGAGAGTTCTTTCAGATCCAACAGGAACTTTGAAATATTTACAAAACCATTTGAATGCCTTGATTCTTCTTGATTCTCCGGGACCTCCTGGTTCATCTGGATCCTCACCTCCGCACTCGTTATTGATTATTAGACTTGTTGGTCCAAAAATCGCATCTCGGTATCCAGCTCTTCGATTTTTTTTGGATGGTTCCCAATCTCCAGTTACAATTTGATGCATAGATGGTTTCGGGGGTTGAGGTGTCATATAAAACCAAAGAGAAGCCATCATAGCCAATGGAGGATCCATTTTTGTCATTACAAGATTTGGATTCTCTAGCAAGTCGACTTTGACACCTTTTGTGAGTAGAAACTGTTGAAAAAGACCGTAGTTGTAGTTCCATGAGAGTTGAAGAGCACCTCGTCCAAAATAACATCCTTTGTGATAATCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>424 423 75 65 13</canonical_bands>
                <polymorphic_bands>498 424 65 13</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTACACACATCGTAGTCGATTC</pcr_primer_p1>
		<pcr_primer_p2>CAGTTGTAAAGGTAAGTTGAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTACACACATCGTAGTCGATTCCGATCGTTTTGTTTTGTGAATTCGTGGGGATAAAGTTTGGGATCATAATAGGGCAGTGGGCCTCCATAGGGAGCTGGTGCACAGTCGCAGGATTGAGATTTCCACATAGTTGCCCAATCCGGATGCCATGAATACATGTGCTGGACTGCATCAAAACCGTCGAGCATTCCTGAAAACCATTCTCAATACTCTCTAACTTGAAAGATCTTTCAACTTACCTTTACAACTG</canonical_amplicon>
		<polymorphic_amplicon>GTACACACATCGTAGTCGATTCCGATCGTTTTGTTTTGTGAATTCGTGGGGATAAAGTTTGGGATCATAATAGGGCAGTGGGCCTCCATAGGGAGCTGGTGCACAGTCGCAGGATTGAGATTTCCACATAGTTGCCCAATCCGGATGCCATGAATACATGTGCTGGACTGCATCAAAACCRTCGAGCATTCCTGAAAACCATTCTCAATACTCTCTAACTTGAAAGATCTTTCAACTTACCTTTACAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9885</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>982240</contig_pos>
        <strand>+</strand>
        <context>GGACTGCATC[A/G]AAACCRTCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACATAGTTGCCCAATCCGGATGCCATGAATACATGTGCTGGACTGCATC</left_flank>
        <right_flank>AAACCGTCGAGCATTCCTGAAAACCATTCTCAATACTCTCTAACTTGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCCGGAGAGCAAGAGAAAGCACTGGCATCAATTAATCGAATCGAGAAAGCTATTGGGAAGAAGTGGAAGAGGAAGAAGAAGTTCAACGCCGAAGAATAGCCTTGTTTTGTTTTCATTGTTGATTTTGTTATGTTATTGTTGTTGAACCATTTCTTATGAATCCAGTTTATTTACAACTATAAGTTAGTTCGTGTTTCACAGAAACACAAATTCCATCGTCACCCTCTTATTCCAGATTTCGTCAAGCGAATTTTAGGTTTATGCTTCAAGCAAGGCGAGTTTCCATCATCCAAACGAAACGTTTCTGGACTCTCATACATGCTGTACACACATCGTAGTCGATTCCGATCGTTTTGTTTTGTGAATTCGTGGGGATAAAGTTTGGGATCATAATAGGGCAGTGGGCCTCCATAGGGAGCTGGTGCACAGTCGCAGGATTGAGATTTCCACATAGTTGCCCAATCCGGATGCCATGAATACATGTGCTGGACTGCATCAAAACCGTCGAGCATTCCTGAAAACCATTCTCAATACTCTCTAACTTGAAAGATCTTTCAACTTACCTTTACAACTGAGAGTTCTTTCAGATCCAACAGGAACTTTGAAATATTTACAAAACCATTTGAATGCCTTGATTCTTCTTGATTCTCCGGGACCTCCTGGTTCATCTGGATCCTCACCTCCGCACTCGTTATTGATTATTAGACTTGTTGGTCCAAAAATCGCATCTCGGTATCCAGCTCTTCGATTTTTTTTGGATGGTTCCCAATCTCCAGTTACAATTTGATGCATAGATGGTTTCGGGGGTTGAGGTGTCATATAAAACCAAAGAGAAGCCATCATAGCCAATGGAGGATCCATTTTTGTCATTACAAGATTTGGATTCTCTAGCAAGTCGACTTTGACACCTTTTGTGAGTAGAAACTGTTGAAAAAGACCGTAGTTGTAGTTCCATGAGAGTTGAAGAGCACCTCGTCCAAAATAACATCCTTTGTGAT</canonical>
            <polymorphic>TTCCCGGAGAGCAAGAGAAAGCACTGGCATCAATTAATCGAATCGAGAAAGCTATTGGGAAGAAGTGGAAGAGGAAGAAGAAGTTCAACGCCGAAGAATAGCCTTGTTTTGTTTTCATTGTTGATTTTGTTATGTTATTGTTGTTGAACCATTTCTTATGAATCCAGTTTATTTACAACTATAAGTTAGTTCGTGTTTCACAGAAACACAAATTCCATCGTCACCCTCTTATTCCAGATTTCGTCAAGCGAATTTTAGGTTTATGCTTCAAGCAAGGCGAGTTTCCATCATCCAAACGAAACGTTTCTGGACTCTCATACATGCTGTACACACATCGTAGTCGATTCCGATCGTTTTGTTTTGTGAATTCGTGGGGATAAAGTTTGGGATCATAATAGGGCAGTGGGCCTCCATAGGGAGCTGGTGCACAGTCGCAGGATTGAGATTTCCACATAGTTGCCCAATCCGGATGCCATGAATACATGTGCTGGACTGCATCRAAACCGTCGAGCATTCCTGAAAACCATTCTCAATACTCTCTAACTTGAAAGATCTTTCAACTTACCTTTACAACTGAGAGTTCTTTCAGATCCAACAGGAACTTTGAAATATTTACAAAACCATTTGAATGCCTTGATTCTTCTTGATTCTCCGGGACCTCCTGGTTCATCTGGATCCTCACCTCCGCACTCGTTATTGATTATTAGACTTGTTGGTCCAAAAATCGCATCTCGGTATCCAGCTCTTCGATTTTTTTTGGATGGTTCCCAATCTCCAGTTACAATTTGATGCATAGATGGTTTCGGGGGTTGAGGTGTCATATAAAACCAAAGAGAAGCCATCATAGCCAATGGAGGATCCATTTTTGTCATTACAAGATTTGGATTCTCTAGCAAGTCGACTTTGACACCTTTTGTGAGTAGAAACTGTTGAAAAAGACCGTAGTTGTAGTTCCATGAGAGTTGAAGAGCACCTCGTCCAAAATAACATCCTTTGTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACACACATCGTAGTCGATTC</pcr_primer_p1>
		<pcr_primer_p2>CAGTTGTAAAGGTAAGTTGAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTACACACATCGTAGTCGATTCCGATCGTTTTGTTTTGTGAATTCGTGGGGATAAAGTTTGGGATCATAATAGGGCAGTGGGCCTCCATAGGGAGCTGGTGCACAGTCGCAGGATTGAGATTTCCACATAGTTGCCCAATCCGGATGCCATGAATACATGTGCTGGACTGCATCAAAACCGTCGAGCATTCCTGAAAACCATTCTCAATACTCTCTAACTTGAAAGATCTTTCAACTTACCTTTACAACTG</canonical_amplicon>
		<polymorphic_amplicon>GTACACACATCGTAGTCGATTCCGATCGTTTTGTTTTGTGAATTCGTGGGGATAAAGTTTGGGATCATAATAGGGCAGTGGGCCTCCATAGGGAGCTGGTGCACAGTCGCAGGATTGAGATTTCCACATAGTTGCCCAATCCGGATGCCATGAATACATGTGCTGGACTGCATCRAAACCGTCGAGCATTCCTGAAAACCATTCTCAATACTCTCTAACTTGAAAGATCTTTCAACTTACCTTTACAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9886</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>1046918</contig_pos>
        <strand>+</strand>
        <context>GTGAAAGCGT[C/T]GTCTTGCGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGACGGGATGAGGATAAGTGAAGACGTAAAACGAAAGCAGTGAAAGCGT</left_flank>
        <right_flank>GTCTTGCGCAATGCATCACTAAGCGAAAGCTTTTTCTTGTCTCTTGACTC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAAAACCAATAATCCAAATCTAATGCAAACCTCTTGATCCGAAAGGTTTAAAATGGAAAACCTAGACTCTGGTATAGGCTCAATTTCACAATTCTCCTCGGAACCTATGCACTACCGTGTACTTGTAGATTTGGGAGTCCCTGGATCATCCCCGATACTTTTCAAGCATTTGGGATGCCCCCGAGCTCACCCCGAGTTCAGTGTAACAAGTGGATCAAAAAAACGAAAAATGGCCAGACAGGGAGCCGTGTGTCCAGGTACACGTCGATGGCACTCTAATCCATCGCGCCCCCCAATTTTCCGCGCGGAAGAGACCGTCGGAAGGGGAGCTCCCCTGTGTGCACAAGTTGCGCAATAGATGCGGCAAAAAGCCTCGACTGGTCATTGGCTTTTGACGTGAGGGGAGGTTCAGCGATCGGAATGAAGCAACAATCTGAACGAAAGGGAAGGACGGGATGAGGATAAGTGAAGACGTAAAACGAAAGCAGTGAAAGCGTTGTCTTGCGCAATGCATCACTAAGCGAAAGCTTTTTCTTGTCTCTTGACTCTCTCTGATCCATACACTCTTTCAGTGCCCAGATCAGGTCCGGTGGATGAGGGATGCCAGAAGTGGCGCGGTGGTATCTCTTGTCATGTACTATTGACGAACCGGTGGATTACAGTATACCCACCAAAAGATGTTTGTGATGGTGGTAGAAAGGTGGTGGTGGTAGCCTGTGTGTGTCATCGTATGAAAAACAGTTGTAAAATAATGGGGCCAAAGTGAATGAGACTAGAAGATTTTTCTAGAAGAGGACAAGTAAGTATCGGATAAGTGGAAATGAGGTTTGATGTTCTTAAAACGGAAGAGATGATGATTAACAAAAGTCAGAGATCTAAAGAGGCATCGAATGGTTTTAAGATCTTTCCAGGAGCATGGCATCAACGTGGCACAAAAGAAGAGGAAGAAGTAAATTGAAGAAAGTAAGTTTCTGAAAAGAAACAGATCACGGAAGTTT</canonical>
            <polymorphic>GAGAAAACCAATAATCCAAATCTAATGCAAACCTCTTGATCCGAAAGGTTTAAAATGGAAAACCTAGACTCTGGTATAGGCTCAATTTCACAATTCTCCTCGGAACCTATGCACTACCGTGTACTTGTAGATTTGGGAGTCCCTGGATCATCCCCGATACTTTTCAAGCATTTGGGATGCCCCCGAGCTCACCCCGAGTTCAGTGTAACAAGTGGATCAAAAAAACGAAAAATGGCCAGACAGGGAGCCGTGTGTCCAGGTACACGTCGATGGCACTCTAATCCATCGCGCCCCCCAATTTTCCGCGCGGAAGAGACCGTCGGAAGGGGAGCTCCCCTGTGTGCACAAGTTGCGCAATAGATGCGGCAAAAAGCCTCGACTGGTCATTGGCTTTTGACGTGAGGGGAGGTTCAGCGATCGGAATGAAGCAACAATCTGAACGAAAGGGAAGGACGGGATGAGGATAAGTGAAGACGTAAAACGAAAGCAGTGAAAGCGTYGTCTTGCGCAATGCATCACTAAGCGAAAGCTTTTTCTTGTCTCTTGACTCTCTCTGATCCATACACTCTTTCAGTGCCCAGATCAGGTCCGGTGGATGAGGGATGCCAGAAGTGGCGCGGTGGTATCTCTTGTCATGTACTATTGACGAACCGGTGGATTACAGTATACCCACCAAAAGATGTTTGTGATGGTGGTAGAAAGGTGGTGGTGGTAGCCTGTGTGTGTCATCGTATGAAAAACAGTTGTAAAATAATGGGGCCAAAGTGAATGAGACTAGAAGATTTTTCTAGAAGAGGACAAGTAAGTATCGGATAAGTGGAAATGAGGTTTGATGTTCTTAAAACGGAAGAGATGATGATTAACAAAAGTCAGAGATCTAAAGAGGCATCGAATGGTTTTAAGATCTTTCCAGGAGCATGGCATCAACGTGGCACAAAAGAAGAGGAAGAAGTAAATTGAAGAAAGTAAGTTTCTGAAAAGAAACAGATCACGGAAGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAATGAAGCAACAATCTGA</pcr_primer_p1>
		<pcr_primer_p2>GTATACTGTAATCCACCGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAATGAAGCAACAATCTGAACGAAAGGGAAGGACGGGATGAGGATAAGTGAAGACGTAAAACGAAAGCAGTGAAAGCGTTGTCTTGCGCAATGCATCACTAAGCGAAAGCTTTTTCTTGTCTCTTGACTCTCTCTGATCCATACACTCTTTCAGTGCCCAGATCAGGTCCGGTGGATGAGGGATGCCAGAAGTGGCGCGGTGGTATCTCTTGTCATGTACTATTGACGAACCGGTGGATTACAGTATAC</canonical_amplicon>
		<polymorphic_amplicon>GGAATGAAGCAACAATCTGAACGAAAGGGAAGGACGGGATGAGGATAAGTGAAGACGTAAAACGAAAGCAGTGAAAGCGTYGTCTTGCGCAATGCATCACTAAGCGAAAGCTTTTTCTTGTCTCTTGACTCTCTCTGATCCATACACTCTTTCAGTGCCCAGATCAGGTCCGGTGGATGAGGGATGCCAGAAGTGGCGCGGTGGTATCTCTTGTCATGTACTATTGACGAACCGGTGGATTACAGTATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9887</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>1079749</contig_pos>
        <strand>+</strand>
        <context>TTTTCTCTTT[C/T]TGGATTTTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTAAGGGCGATAAAGAACAACTTGTTTTTGTTGTGTTGTTTTCTCTTT</left_flank>
        <right_flank>TGGATTTTCGTTATAATGGAAAAAAGTTGATTGCTAGAAAAACAAAAACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAATCGAAAACTTCGGTTTACTGAAACCAAACAGGGAATTCTTCCTTTTTTCGAGAATCTCGCTGATTCTTCTTCTCTTTAAAATTGGGAAACACGTCATTTTGCCCTACAGGTGAGATGATCAGATGATCGATGATTTTATGGTAGGAGTGACTGAGACTAGAATTAGTTAGTGGATGATACAAGGATAGACAATCAGTATTGACGATTTCAAAGTTTACAAATCACCGCACAAAGTATTTGATAGGGAGAGAGGGTGTTGTGAAATTGAGAAGATGAACAAAACAGAATGAAGATATGTATGTAGAAGAAAAAATATCGGGGATTTAAGAAATGGCAGAACGTCGGGAGATGTGGCAGAATGAAAGAACCAGTCGGCTAGCATGGTGTTCGAGTGAATGTGGCTAATCATAACCAACTTTTTTCTCTTTACTTTTTCATTCTTTTTTCTTAAGGGCGATAAAGAACAACTTGTTTTTGTTGTGTTGTTTTCTCTTTCTGGATTTTCGTTATAATGGAAAAAAGTTGATTGCTAGAAAAACAAAAACACAGACACTGTTAAGATGTCGAATGGCAATCTGAAGAAATCGGTTGCGATTTCTATAACCTGGGTGGAGAACGGTGAAGTAGTTGATCTATAGAATTGTATAACGATTGAACTTTTTGAAGATTGAAGACCAACTCAACTCGGGCGTTGTCTTCAACTTCTGGTCGGAGATTCCGGATAAGACCGCTACTAAAGCCGACCAAACTATGGCAAATTAATAGCAAGATTTTGACCTACAACATTCTAGAATTTTCAAAACGAATCTATTTCTAAGAAACAAGGATGTTCTTTTTAAACATCTGGTCATTTATTTAAAGTTAATCTCATCCTATTCGAAACATCAGAGTCTACCATGGCGGCCAGACCTCCTGTTACTGGAAGTACCTAAAAAGACACCGTACGGCAACCTTTTTTGGAAATATATATTACTTTATTCTCCTATTTCGTTAATT</canonical>
            <polymorphic>TGAATCGAAAACTTCGGTTTACTGAAACCAAACAGGGAATTCTTCCTTTTTTCGAGAATCTCGCTGATTCTTCTTCTCTTTAAAATTGGGAAACACGTCATTTTGCCCTACAGGTGAGATGATCAGATGATCGATGATTTTATGGTAGGAGTGACTGAGACTAGAATTAGTTAGTGGATGATACAAGGATAGACAATCAGTATTGACGATTTCAAAGTTTACAAATCACCGCACAAAGTATTTGATAGGGAGAGAGGGTGTTGTGAAATTGAGAAGATGAACAAAACAGAATGAAGATATGTATGTAGAAGAAAAAATATCGGGGATTTAAGAAATGGCAGAACGTCGGGAGATGTGGCAGAATGAAAGAACCAGTCGGCTAGCATGGTGTTCGAGTGAATGTGGCTAATCATAACCAACTTTTTTCTCTTTACTTTTTCATTCTTTTTTCTTAAGGGCGATAAAGAACAACTTGTTTTTGTTGTGTTGTTTTCTCTTTYTGGATTTTCGTTATAATGGAAAAAAGTTGATTGCTAGAAAAACAAAAACACAGACACTGTTAAGATGTCGAATGGCAATCTGAAGAAATCGGTTGCGATTTCTATAACCTGGGTGGAGAACGGTGAAGTAGTTGATCTATAGAATTGTATAACGATTGAACTTTTTGAAGATTGAAGACCAACTCAACTCGGGCGTTGTCTTCAACTTCTGGTCGGAGATTCCGGATAAGACCGCTACTAAAGCCGACCAAACTATGGCAAATTAATAGCAAGATTTTGACCTACAACATTCTAGAATTTTCAAAACGAATCTATTTCTAAGAAACAAGGATGTTCTTTTTAAACATCTGGTCATTTATTTAAAGTTAATCTCATCCTATTCGAAACATCAGAGTCTACCATGGCGGCCAGACCTCCTGTTACTGGAAGTACCTAAAAAGACACCGTACGGCAACCTTTTTTGGAAATATATATTACTTTATTCTCCTATTTCGTTAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>294 222 208 153 70 53</canonical_bands>
                <polymorphic_bands>375 294 208 70 53</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTGAATGTGGCTAATCATAAC</pcr_primer_p1>
		<pcr_primer_p2>TAGATCAACTACTTCACCGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAGTGAATGTGGCTAATCATAACCAACTTTTTTCTCTTTACTTTTTCATTCTTTTTTCTTAAGGGCGATAAAGAACAACTTGTTTTTGTTGTGTTGTTTTCTCTTTCTGGATTTTCGTTATAATGGAAAAAAGTTGATTGCTAGAAAAACAAAAACACAGACACTGTTAAGATGTCGAATGGCAATCTGAAGAAATCGGTTGCGATTTCTATAACCTGGGTGGAGAACGGTGAAGTAGTTGATCTA</canonical_amplicon>
		<polymorphic_amplicon>GAGTGAATGTGGCTAATCATAACCAACTTTTTTCTCTTTACTTTTTCATTCTTTTTTCTTAAGGGCGATAAAGAACAACTTGTTTTTGTTGTGTTGTTTTCTCTTTYTGGATTTTCGTTATAATGGAAAAAAGTTGATTGCTAGAAAAACAAAAACACAGACACTGTTAAGATGTCGAATGGCAATCTGAAGAAATCGGTTGCGATTTCTATAACCTGGGTGGAGAACGGTGAAGTAGTTGATCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9888</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>1083071</contig_pos>
        <strand>+</strand>
        <context>GGAATTTTTT[A/G]AAATCCCGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTCCTCACCTTTTATTTTCTACTTTGGTGTATTGAATTCGGAATTTTTT</left_flank>
        <right_flank>AAATCCCGATTTCGCCCCAATGGTTCAAAAGTTTTATATCAAAAGTTTAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATATATTTGTTTGCAGAGATTTTCTTTCAATTTTTGTTACCTTATCGAAGTTGCATGAAAACTTTTGAACTCCTCCCACTACCGGCGTTTCTGCTGACTGGCGTTTTATTTATTGACTATAACAGGGATAATTTAGCCATAGTTCAAATTTCTCTGTTAATTTCTTCGCAAAGGTTGCCCATAAAATTGCCTTTTTCCAAAAAAAGAATAGTCAATGGGAGTTGAAAGGTGGTACTCAACTTTTGGATCTTTGTTTTTTGCGTGACCTTTTTCTGTGTGGTCTTGTGTGGCCGGTCGTACTTTATAAAACAAAAGTTTAATTAGAAAATTAAATTTTACACATTTTTTCTATTTTTTAAAAAATATTTGCACGTGAAAATACACCCCCTAAATTTCAAGGTAGCCGTTAAAAGTATTTTTAGTTCTCAAACTTTTTTTCCAATCCCCACTTCCTCACCTTTTATTTTCTACTTTGGTGTATTGAATTCGGAATTTTTTAAAATCCCGATTTCGCCCCAATGGTTCAAAAGTTTTATATCAAAAGTTTACGAAATACAGATCAAGAAACGAAAATTTAAAATATTTTCGAATTCCCATTTCCTCACCTTTTATTCTCCTTTACTACTCCTGTCATCTGAACTCCTGCCAATTTCAGAAAGTGTCCTGGATGGTGTCCTTGAAGTCCTGAGTTCCCGGGAACCAAGAAGCACCTAAAACATAAATATTGAAATTGATCTGAATCCCGATTTCACCCCCATTATTTTTATCACTGGTTTCTCGAACTGAATTTTTAAATTTAAAATTTTTCCGGAAAAAAAGTGGTTCAGAAGTTTACAAAAAACCAGGGCTGTCCAAAACGAAGGCCGGGCCTCGGCCGGCCTCGAAAAAGCCTCGGCCGAAGAAAAAAAGGCCTCGGCGCGCTCCATTGAGAAAAAGCCTCGCGAGGCCGGCCTCGCAAATGTGACTACGGTCAGCAAGTCGCATATTTTACGACAAGTT</canonical>
            <polymorphic>TATATATTTGTTTGCAGAGATTTTCTTTCAATTTTTGTTACCTTATCGAAGTTGCATGAAAACTTTTGAACTCCTCCCACTACCGGCGTTTCTGCTGACTGGCGTTTTATTTATTGACTATAACAGGGATAATTTAGCCATAGTTCAAATTTCTCTGTTAATTTCTTCGCAAAGGTTGCCCATAAAATTGCCTTTTTCCAAAAAAAGAATAGTCAATGGGAGTTGAAAGGTGGTACTCAACTTTTGGATCTTTGTTTTTTGCGTGACCTTTTTCTGTGTGGTCTTGTGTGGCCGGTCGTACTTTATAAAACAAAAGTTTAATTAGAAAATTAAATTTTACACATTTTTTCTATTTTTTAAAAAATATTTGCACGTGAAAATACACCCCCTAAATTTCAAGGTAGCCGTTAAAAGTATTTTTAGTTCTCAAACTTTTTTTCCAATCCCCACTTCCTCACCTTTTATTTTCTACTTTGGTGTATTGAATTCGGAATTTTTTRAAATCCCGATTTCGCCCCAATGGTTCAAAAGTTTTATATCAAAAGTTTACGAAATACAGATCAAGAAACGAAAATTTAAAATATTTTCGAATTCCCATTTCCTCACCTTTTATTCTCCTTTACTACTCCTGTCATCTGAACTCCTGCCAATTTCAGAAAGTGTCCTGGATGGTGTCCTTGAAGTCCTGAGTTCCCGGGAACCAAGAAGCACCTAAAACATAAATATTGAAATTGATCTGAATCCCGATTTCACCCCCATTATTTTTATCACTGGTTTCTCGAACTGAATTTTTAAATTTAAAATTTTTCCGGAAAAAAAGTGGTTCAGAAGTTTACAAAAAACCAGGGCTGTCCAAAACGAAGGCCGGGCCTCGGCCGGCCTCGAAAAAGCCTCGGCCGAAGAAAAAAAGGCCTCGGCGCGCTCCATTGAGAAAAAGCCTCGCGAGGCCGGCCTCGCAAATGTGACTACGGTCAGCAAGTCGCATATTTTACGACAAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>358 216 201 141 78 6</canonical_bands>
                <polymorphic_bands>358 219 216 201 6</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>216 202 160 158 90 78 51 27 12 6</canonical_bands>
                <polymorphic_bands>216 202 168 160 158 51 27 12 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGAAAATACACCCCCTAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTCTTGATCTGTATTTCGTAAACT</pcr_primer_p2>
		<pcr_amplicon_size>194</pcr_amplicon_size>
		<canonical_amplicon>GTGAAAATACACCCCCTAAATTTCAAGGTAGCCGTTAAAAGTATTTTTAGTTCTCAAACTTTTTTTCCAATCCCCACTTCCTCACCTTTTATTTTCTACTTTGGTGTATTGAATTCGGAATTTTTTAAAATCCCGATTTCGCCCCAATGGTTCAAAAGTTTTATATCAAAAGTTTACGAAATACAGATCAAGAA</canonical_amplicon>
		<polymorphic_amplicon>GTGAAAATACACCCCCTAAATTTCAAGGTAGCCGTTAAAAGTATTTTTAGTTCTCAAACTTTTTTTCCAATCCCCACTTCCTCACCTTTTATTTTCTACTTTGGTGTATTGAATTCGGAATTTTTTRAAATCCCGATTTCGCCCCAATGGTTCAAAAGTTTTATATCAAAAGTTTACGAAATACAGATCAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9889</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>1083016</contig_pos>
        <strand>+</strand>
        <context>TTTTTCCAAT[C/T]CCCACTTCCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAAGGTAGCCGTTAAAAGTATTTTTAGTTCTCAAACTTTTTTTCCAAT</left_flank>
        <right_flank>CCCACTTCCTCACCTTTTATTTTCTACTTTGGTGTATTGAATTCGGAATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAGATGCGACGTCCGTTTAGTACCTCTGGAGACATTCGGAACCTGAAATTATATATATATTTGTTTGCAGAGATTTTCTTTCAATTTTTGTTACCTTATCGAAGTTGCATGAAAACTTTTGAACTCCTCCCACTACCGGCGTTTCTGCTGACTGGCGTTTTATTTATTGACTATAACAGGGATAATTTAGCCATAGTTCAAATTTCTCTGTTAATTTCTTCGCAAAGGTTGCCCATAAAATTGCCTTTTTCCAAAAAAAGAATAGTCAATGGGAGTTGAAAGGTGGTACTCAACTTTTGGATCTTTGTTTTTTGCGTGACCTTTTTCTGTGTGGTCTTGTGTGGCCGGTCGTACTTTATAAAACAAAAGTTTAATTAGAAAATTAAATTTTACACATTTTTTCTATTTTTTAAAAAATATTTGCACGTGAAAATACACCCCCTAAATTTCAAGGTAGCCGTTAAAAGTATTTTTAGTTCTCAAACTTTTTTTCCAATCCCCACTTCCTCACCTTTTATTTTCTACTTTGGTGTATTGAATTCGGAATTTTTTAAAATCCCGATTTCGCCCCAATGGTTCAAAAGTTTTATATCAAAAGTTTACGAAATACAGATCAAGAAACGAAAATTTAAAATATTTTCGAATTCCCATTTCCTCACCTTTTATTCTCCTTTACTACTCCTGTCATCTGAACTCCTGCCAATTTCAGAAAGTGTCCTGGATGGTGTCCTTGAAGTCCTGAGTTCCCGGGAACCAAGAAGCACCTAAAACATAAATATTGAAATTGATCTGAATCCCGATTTCACCCCCATTATTTTTATCACTGGTTTCTCGAACTGAATTTTTAAATTTAAAATTTTTCCGGAAAAAAAGTGGTTCAGAAGTTTACAAAAAACCAGGGCTGTCCAAAACGAAGGCCGGGCCTCGGCCGGCCTCGAAAAAGCCTCGGCCGAAGAAAAAAAGGCCTCGGCGCGCTCCATTGAGAAAAAGCCTCGCGA</canonical>
            <polymorphic>CAAAGATGCGACGTCCGTTTAGTACCTCTGGAGACATTCGGAACCTGAAATTATATATATATTTGTTTGCAGAGATTTTCTTTCAATTTTTGTTACCTTATCGAAGTTGCATGAAAACTTTTGAACTCCTCCCACTACCGGCGTTTCTGCTGACTGGCGTTTTATTTATTGACTATAACAGGGATAATTTAGCCATAGTTCAAATTTCTCTGTTAATTTCTTCGCAAAGGTTGCCCATAAAATTGCCTTTTTCCAAAAAAAGAATAGTCAATGGGAGTTGAAAGGTGGTACTCAACTTTTGGATCTTTGTTTTTTGCGTGACCTTTTTCTGTGTGGTCTTGTGTGGCCGGTCGTACTTTATAAAACAAAAGTTTAATTAGAAAATTAAATTTTACACATTTTTTCTATTTTTTAAAAAATATTTGCACGTGAAAATACACCCCCTAAATTTCAAGGTAGCCGTTAAAAGTATTTTTAGTTCTCAAACTTTTTTTCCAATYCCCACTTCCTCACCTTTTATTTTCTACTTTGGTGTATTGAATTCGGAATTTTTTAAAATCCCGATTTCGCCCCAATGGTTCAAAAGTTTTATATCAAAAGTTTACGAAATACAGATCAAGAAACGAAAATTTAAAATATTTTCGAATTCCCATTTCCTCACCTTTTATTCTCCTTTACTACTCCTGTCATCTGAACTCCTGCCAATTTCAGAAAGTGTCCTGGATGGTGTCCTTGAAGTCCTGAGTTCCCGGGAACCAAGAAGCACCTAAAACATAAATATTGAAATTGATCTGAATCCCGATTTCACCCCCATTATTTTTATCACTGGTTTCTCGAACTGAATTTTTAAATTTAAAATTTTTCCGGAAAAAAAGTGGTTCAGAAGTTTACAAAAAACCAGGGCTGTCCAAAACGAAGGCCGGGCCTCGGCCGGCCTCGAAAAAGCCTCGGCCGAAGAAAAAAAGGCCTCGGCGCGCTCCATTGAGAAAAAGCCTCGCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTGTGTGGTCTTGTGTG</pcr_primer_p1>
		<pcr_primer_p2>TGATATAAAACTTTTGAACCATTG</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>TTTCTGTGTGGTCTTGTGTGGCCGGTCGTACTTTATAAAACAAAAGTTTAATTAGAAAATTAAATTTTACACATTTTTTCTATTTTTTAAAAAATATTTGCACGTGAAAATACACCCCCTAAATTTCAAGGTAGCCGTTAAAAGTATTTTTAGTTCTCAAACTTTTTTTCCAATCCCCACTTCCTCACCTTTTATTTTCTACTTTGGTGTATTGAATTCGGAATTTTTTAAAATCCCGATTTCGCCCCAATGGTTCAAAAGTTTTATATCA</canonical_amplicon>
		<polymorphic_amplicon>TTTCTGTGTGGTCTTGTGTGGCCGGTCGTACTTTATAAAACAAAAGTTTAATTAGAAAATTAAATTTTACACATTTTTTCTATTTTTTAAAAAATATTTGCACGTGAAAATACACCCCCTAAATTTCAAGGTAGCCGTTAAAAGTATTTTTAGTTCTCAAACTTTTTTTCCAATYCCCACTTCCTCACCTTTTATTTTCTACTTTGGTGTATTGAATTCGGAATTTTTTAAAATCCCGATTTCGCCCCAATGGTTCAAAAGTTTTATATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9955</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>1143554</contig_pos>
        <strand>+</strand>
        <context>TGCGAGAATA[C/T]TTTTAGAAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAACGATAAGAAGAAGGCTTTTTCCTAGAAAACTCAAAAGTGCGAGAATA</left_flank>
        <right_flank>TTTTAGAAGCTCTTGAGAATATGAGAATACAGTTGCGAAATGTTCTGGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGTGCATGTTTTACAACTGCAGTTATTGAATGGGCATCTGCTTGCATGTCCCTTTAAAACAACTTGTTGTCCGTGGCCCTCGCATTTGCGGCAGAAAAGAGTTCGGTTTGATGATCGAGCCGCACCCTGAAATCACAATAATTGAATTAATTCTCTAACTGGCTTTCTGAATTTCTGCTAATTTTTCATCATTACATGACGTCTACAGTTGTTTCTCAATTTTTGCAATTGCCCTTGTTTATGTTATTGTTCAATTTTATTCTCTTCCATCTTTTTCCTTTTTTTTTCAAAAACAATAACATCGATTACAGTATGATTCTTGACCCGATTGAGTACATCATGGACTCGGCAATATTTTTGTTTTTTTGAGAAAAAAAAGACGAACGAAAATCAGCCGTTTTTAGTCGGGTGTCCTCTTTGAAAGGTGAATTATTCATAGTTTTTGGCAACGATAAGAAGAAGGCTTTTTCCTAGAAAACTCAAAAGTGCGAGAATACTTTTAGAAGCTCTTGAGAATATGAGAATACAGTTGCGAAATGTTCTGGATCTTTAAAGTCATCGACGGATCCTGTGCTTTTGTGAAGTACTCACCCCGCAGGTCAGGCCTCCAATATGATGTCGTTGAAGAACTTCCTGTCGAACCTCTTCAATCGTATGATCGACATCAGATGTGAGCAATTGCGCTTCTAATACAACTTGAGTTCCTTGTGGTAGCGGGACGACGATTTCGCTGAAAGACCATGAACTGAAGTTACAGTAATCCCAATTCGGCCATTTTTATTATGTTTGTACATGGAGATTGGAGATCAAATTGAGACAACCATTGTAAATACAGCACTAGTCTTTTTTTTCTCTTTTTCCCCATCGCAAAGTCTACCAAATAACACTAAAACGTTTTGGGGTTGAGGTGAGTGACACAACAGAGATCTGGTTTTTTTTCGACTCAATCGCTTTTCTCCCTCTCTCAATTTTCGAAAAACTTTGCCTCTCCTTCATT</canonical>
            <polymorphic>ATTTGTGCATGTTTTACAACTGCAGTTATTGAATGGGCATCTGCTTGCATGTCCCTTTAAAACAACTTGTTGTCCGTGGCCCTCGCATTTGCGGCAGAAAAGAGTTCGGTTTGATGATCGAGCCGCACCCTGAAATCACAATAATTGAATTAATTCTCTAACTGGCTTTCTGAATTTCTGCTAATTTTTCATCATTACATGACGTCTACAGTTGTTTCTCAATTTTTGCAATTGCCCTTGTTTATGTTATTGTTCAATTTTATTCTCTTCCATCTTTTTCCTTTTTTTTTCAAAAACAATAACATCGATTACAGTATGATTCTTGACCCGATTGAGTACATCATGGACTCGGCAATATTTTTGTTTTTTTGAGAAAAAAAAGACGAACGAAAATCAGCCGTTTTTAGTCGGGTGTCCTCTTTGAAAGGTGAATTATTCATAGTTTTTGGCAACGATAAGAAGAAGGCTTTTTCCTAGAAAACTCAAAAGTGCGAGAATAYTTTTAGAAGCTCTTGAGAATATGAGAATACAGTTGCGAAATGTTCTGGATCTTTAAAGTCATCGACGGATCCTGTGCTTTTGTGAAGTACTCACCCCGCAGGTCAGGCCTCCAATATGATGTCGTTGAAGAACTTCCTGTCGAACCTCTTCAATCGTATGATCGACATCAGATGTGAGCAATTGCGCTTCTAATACAACTTGAGTTCCTTGTGGTAGCGGGACGACGATTTCGCTGAAAGACCATGAACTGAAGTTACAGTAATCCCAATTCGGCCATTTTTATTATGTTTGTACATGGAGATTGGAGATCAAATTGAGACAACCATTGTAAATACAGCACTAGTCTTTTTTTTCTCTTTTTCCCCATCGCAAAGTCTACCAAATAACACTAAAACGTTTTGGGGTTGAGGTGAGTGACACAACAGAGATCTGGTTTTTTTTCGACTCAATCGCTTTTCTCCCTCTCTCAATTTTCGAAAAACTTTGCCTCTCCTTCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCCTCTTTGAAAGGTGAATTAT</pcr_primer_p1>
		<pcr_primer_p2>GATCATACGATTGAAGAGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCCTCTTTGAAAGGTGAATTATTCATAGTTTTTGGCAACGATAAGAAGAAGGCTTTTTCCTAGAAAACTCAAAAGTGCGAGAATACTTTTAGAAGCTCTTGAGAATATGAGAATACAGTTGCGAAATGTTCTGGATCTTTAAAGTCATCGACGGATCCTGTGCTTTTGTGAAGTACTCACCCCGCAGGTCAGGCCTCCAATATGATGTCGTTGAAGAACTTCCTGTCGAACCTCTTCAATCGTATGATC</canonical_amplicon>
		<polymorphic_amplicon>GTCCTCTTTGAAAGGTGAATTATTCATAGTTTTTGGCAACGATAAGAAGAAGGCTTTTTCCTAGAAAACTCAAAAGTGCGAGAATAYTTTTAGAAGCTCTTGAGAATATGAGAATACAGTTGCGAAATGTTCTGGATCTTTAAAGTCATCGACGGATCCTGTGCTTTTGTGAAGTACTCACCCCGCAGGTCAGGCCTCCAATATGATGTCGTTGAAGAACTTCCTGTCGAACCTCTTCAATCGTATGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9992</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>30279</contig_pos>
        <strand>+</strand>
        <context>tttattttCA[A/G]AGAGTATTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGTAATTAGGAGTTTTATTGTAAAATTAAATTTAAAAAATTTATTTTCA</left_flank>
        <right_flank>AGAGTATTAAACTAATCGGGGGAACATTAAATAGGCATAATCAAAAAATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTGTAATTGTGATGTGATACTGTAGTGAAATTACTGCAGTCTTTTTGTGGAGTACTGTGGTTGTATTGGTTACGGTAGTTTGACTTCTGTAGCCGTGGTGAGGTAGAGTAATAATTACAGTGTAATTGGATTACTGTAGTTTTCTATTGAGTTTTCTAAAGTGTTGGTTACTGTAGTTTGATTACTGTAGTCGCTGCAATCAAAAGCATGGTATTTCTGTAACCGTAGTATCCGCAGTTCTTATCATTTCTTATCGGCGCATGAAATAATTGTTGTGACTAATTAGTGACTAATTAAATATCAATTAACTTTTCCAGAATTTTCTTCATATAAATTTCGAAGAATTCAATATGTGGGAGGAGGAAGAATAATCCTATTGGGGTTCAATTTTTTAAAAGTTTCGGTAATTACTTATTTTTTAATGAGTAAAACCAGGTTAGATAATTAGGGGTAATTAGGAGTTTTATTGTAAAATTAAATTTAAAAAATTTATTTTCAGAGAGTATTAAACTAATCGGGGGAACATTAAATAGGCATAATCAAAAAATGTGGAAAAAAATTTTTTTTTGAAAAAGTCGAAATTTTATTTTCAGAGAACCCATCGTTCTGGCTGATTTCATTGCATTCTTCTCAATATTTTTCGAAAAATATAAATATTTTTTCTGAATTAAATGATATTTTTCTGTATTCTAATACACAATTATTTGGACCTTTTTTACATTTATAAAGCATTTTATTTGGAATTTTTTTAAACATGAAAATATGAGGAATTTTCAGAGCTTCAGAATTTTCAAATGCTCAAAAATTTTGCAACTTTTGAGCCCAAACTAAAAAACTGAAAAGTGTTGCTGATTGAAAGTTTGCAGATTACAGAAACAAGATACACACTCTAGAAATCACAAAAAATGAATATCAGTTCCACCGAATTTAGAATAGAATTTTTCATTTTATTAGAATTTTCAAAAAAAAAAGCTCTAACGAAAACTTCTACAGTAATCT</canonical>
            <polymorphic>ACTGTAATTGTGATGTGATACTGTAGTGAAATTACTGCAGTCTTTTTGTGGAGTACTGTGGTTGTATTGGTTACGGTAGTTTGACTTCTGTAGCCGTGGTGAGGTAGAGTAATAATTACAGTGTAATTGGATTACTGTAGTTTTCTATTGAGTTTTCTAAAGTGTTGGTTACTGTAGTTTGATTACTGTAGTCGCTGCAATCAAAAGCATGGTATTTCTGTAACCGTAGTATCCGCAGTTCTTATCATTTCTTATCGGCGCATGAAATAATTGTTGTGACTAATTAGTGACTAATTAAATATCAATTAACTTTTCCAGAATTTTCTTCATATAAATTTCGAAGAATTCAATATGTGGGAGGAGGAAGAATAATCCTATTGGGGTTCAATTTTTTAAAAGTTTCGGTAATTACTTATTTTTTAATGAGTAAAACCAGGTTAGATAATTAGGGGTAATTAGGAGTTTTATTGTAAAATTAAATTTAAAAAATTTATTTTCARAGAGTATTAAACTAATCGGGGGAACATTAAATAGGCATAATCAAAAAATGTGGAAAAAAATTTTTTTTTGAAAAAGTCGAAATTTTATTTTCAGAGAACCCATCGTTCTGGCTGATTTCATTGCATTCTTCTCAATATTTTTCGAAAAATATAAATATTTTTTCTGAATTAAATGATATTTTTCTGTATTCTAATACACAATTATTTGGACCTTTTTTACATTTATAAAGCATTTTATTTGGAATTTTTTTAAACATGAAAATATGAGGAATTTTCAGAGCTTCAGAATTTTCAAATGCTCAAAAATTTTGCAACTTTTGAGCCCAAACTAAAAAACTGAAAAGTGTTGCTGATTGAAAGTTTGCAGATTACAGAAACAAGATACACACTCTAGAAATCACAAAAAATGAATATCAGTTCCACCGAATTTAGAATAGAATTTTTCATTTTATTAGAATTTTCAAAAAAAAAAGCTCTAACGAAAACTTCTACAGTAATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>499 215 112 94 72 8</canonical_bands>
                <polymorphic_bands>593 215 112 72 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGAGGAAGAATAATCCTATTG</pcr_primer_p1>
		<pcr_primer_p2>GATGGGTTCTCTGAAAATAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAGGAGGAAGAATAATCCTATTGGGGTTCAATTTTTTAAAAGTTTCGGTAATTACTTATTTTTTAATGAGTAAAACCAGGTTAGATAATTAGGGGTAATTAGGAGTTTTATTGTAAAATTAAATTTAAAAAATTTATTTTCAGAGAGTATTAAACTAATCGGGGGAACATTAAATAGGCATAATCAAAAAATGTGGAAAAAAATTTTTTTTTGAAAAAGTCGAAATTTTATTTTCAGAGAACCCATC</canonical_amplicon>
		<polymorphic_amplicon>GAGGAGGAAGAATAATCCTATTGGGGTTCAATTTTTTAAAAGTTTCGGTAATTACTTATTTTTTAATGAGTAAAACCAGGTTAGATAATTAGGGGTAATTAGGAGTTTTATTGTAAAATTAAATTTAAAAAATTTATTTTCARAGAGTATTAAACTAATCGGGGGAACATTAAATAGGCATAATCAAAAAATGTGGAAAAAAATTTTTTTTTGAAAAAGTCGAAATTTTATTTTCAGAGAACCCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9993</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>32572</contig_pos>
        <strand>+</strand>
        <context>TCCGATCATC[A/C]AGACGTCAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATC</left_flank>
        <right_flank>AGACGTCAAGACTGTCTTCGGTATCAAAAGTGTCAAGGATCCATTATCAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGCAAGAATCACATATGGAATTTATGTTCAAAAAGGATTAACCGACGGTGAAATTTCCATTGACGAGATTTTCAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTCCGAAGGTTGAGAGCTTCTTGGAATATTGTGGAAAATTGGATGAGGCATTCGTATTTCTAACGGGCAGGAAGAATTTGGATGACGCTGCGGATAAACTTTTAGCCACCGGATACTTTTCGGTTTTAAAAAATCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATCAAGACGTCAAGACTGTCTTCGGTATCAAAAGTGTCAAGGATCCATTATCAGTGATTTTCCAAGCCACGGATGCTTCCAAAGAATTCAATAAACAAACCAAATCGTTTACTGTAGATCCTGATGCTAGAAACAAGAATTTTGAGAATTTCAAGGATATTTGGGAATATTCTCAAAAGTCTAATACAAATATTCAAGCTCTAAAATCAATTGAAGATTTGATGACGTCATCTGGAGAAACTTTTAATCCAACGACATTTGAAAAAATGTTTGATGATTTGAATGATCCTTGGGTGAAGTCAGTTATTAAATCTCCCGAATTTCCGAAGTCTCTGGAAAGTCTGAAACTCTTCGAAGCGTCATATCTAAAGAAAATTCAAGCCAATTTGAAAGGATCCAGAGGTCAAAACATTCCAATTTTTGATCTACTTTTAAATTCGAATTACAATCCAACGGAAGCTGAAACTGTGGCGAACGAATTTACAAACTGTCGAAAGAAACTTC</canonical>
            <polymorphic>ATCGCAAGAATCACATATGGAATTTATGTTCAAAAAGGATTAACCGACGGTGAAATTTCCATTGACGAGATTTTCAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTCCGAAGGTTGAGAGCTTCTTGGAATATTGTGGAAAATTGGATGAGGCATTCGTATTTCTAACGGGCAGGAAGAATTTGGATGACGCTGCGGATAAACTTTTAGCCACCGGATACTTTTCGGTTTTAAAAAATCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATCMAGACGTCAAGACTGTCTTCGGTATCAAAAGTGTCAAGGATCCATTATCAGTGATTTTCCAAGCCACGGATGCTTCCAAAGAATTCAATAAACAAACCAAATCGTTTACTGTAGATCCTGATGCTAGAAACAAGAATTTTGAGAATTTCAAGGATATTTGGGAATATTCTCAAAAGTCTAATACAAATATTCAAGCTCTAAAATCAATTGAAGATTTGATGACGTCATCTGGAGAAACTTTTAATCCAACGACATTTGAAAAAATGTTTGATGATTTGAATGATCCTTGGGTGAAGTCAGTTATTAAATCTCCCGAATTTCCGAAGTCTCTGGAAAGTCTGAAACTCTTCGAAGCGTCATATCTAAAGAAAATTCAAGCCAATTTGAAAGGATCCAGAGGTCAAAACATTCCAATTTTTGATCTACTTTTAAATTCGAATTACAATCCAACGGAAGCTGAAACTGTGGCGAACGAATTTACAAACTGTCGAAAGAAACTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAGGCATTCGTATTTCTAAC</pcr_primer_p1>
		<pcr_primer_p2>GTAAACGATTTGGTTTGTTTATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGAGGCATTCGTATTTCTAACGGGCAGGAAGAATTTGGATGACGCTGCGGATAAACTTTTAGCCACCGGATACTTTTCGGTTTTAAAAAATCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATCAAGACGTCAAGACTGTCTTCGGTATCAAAAGTGTCAAGGATCCATTATCAGTGATTTTCCAAGCCACGGATGCTTCCAAAGAATTCAATAAACAAACCAAATCGTTTAC</canonical_amplicon>
		<polymorphic_amplicon>ATGAGGCATTCGTATTTCTAACGGGCAGGAAGAATTTGGATGACGCTGCGGATAAACTTTTAGCCACCGGATACTTTTCGGTTTTAAAAAATCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATCMAGACGTCAAGACTGTCTTCGGTATCAAAAGTGTCAAGGATCCATTATCAGTGATTTTCCAAGCCACGGATGCTTCCAAAGAATTCAATAAACAAACCAAATCGTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9994</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>32404</contig_pos>
        <strand>+</strand>
        <context>AAGGTTGAGA[A/G]CTTCTTGGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTCCGAAGGTTGAGA</left_flank>
        <right_flank>CTTCTTGGAATATTGTGGAAAATTGGATGAGGCATTCGTATTTCTAACGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGTTCAATGAACATTTTCGGAAAAAATGGCCGGAAACAAAGAAAGGCCATCCAGAAGTTTCTTGTACCAATAGACGGGCCGGCCCTTCTAATAGAGATTTTACAGTAATTCAAAGAATTATTTTCAGATAAAATTCTCCAGCTCTCCGTTGATCGTATGGAAAAAATCGCAAGAATCACATATGGAATTTATGTTCAAAAAGGATTAACCGACGGTGAAATTTCCATTGACGAGATTTTCAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTCCGAAGGTTGAGAGCTTCTTGGAATATTGTGGAAAATTGGATGAGGCATTCGTATTTCTAACGGGCAGGAAGAATTTGGATGACGCTGCGGATAAACTTTTAGCCACCGGATACTTTTCGGTTTTAAAAAATCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATCAAGACGTCAAGACTGTCTTCGGTATCAAAAGTGTCAAGGATCCATTATCAGTGATTTTCCAAGCCACGGATGCTTCCAAAGAATTCAATAAACAAACCAAATCGTTTACTGTAGATCCTGATGCTAGAAACAAGAATTTTGAGAATTTCAAGGATATTTGGGAATATTCTCAAAAGTCTAATACAAATATTCAAGCTCTAAAATCAATTGAAGATTTGATGACGTCATCTGGAGAAACTTTTAATCCAACGACATTTGAAAAAATGTTTGATGATTTGAATGATCCTTGGGTGAAGTCAGTTATTAAATCTCCCGAATTTCCGAAGTCTCTGG</canonical>
            <polymorphic>AATTGTTCAATGAACATTTTCGGAAAAAATGGCCGGAAACAAAGAAAGGCCATCCAGAAGTTTCTTGTACCAATAGACGGGCCGGCCCTTCTAATAGAGATTTTACAGTAATTCAAAGAATTATTTTCAGATAAAATTCTCCAGCTCTCCGTTGATCGTATGGAAAAAATCGCAAGAATCACATATGGAATTTATGTTCAAAAAGGATTAACCGACGGTGAAATTTCCATTGACGAGATTTTCAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTCCGAAGGTTGAGARCTTCTTGGAATATTGTGGAAAATTGGATGAGGCATTCGTATTTCTAACGGGCAGGAAGAATTTGGATGACGCTGCGGATAAACTTTTAGCCACCGGATACTTTTCGGTTTTAAAAAATCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATCAAGACGTCAAGACTGTCTTCGGTATCAAAAGTGTCAAGGATCCATTATCAGTGATTTTCCAAGCCACGGATGCTTCCAAAGAATTCAATAAACAAACCAAATCGTTTACTGTAGATCCTGATGCTAGAAACAAGAATTTTGAGAATTTCAAGGATATTTGGGAATATTCTCAAAAGTCTAATACAAATATTCAAGCTCTAAAATCAATTGAAGATTTGATGACGTCATCTGGAGAAACTTTTAATCCAACGACATTTGAAAAAATGTTTGATGATTTGAATGATCCTTGGGTGAAGTCAGTTATTAAATCTCCCGAATTTCCGAAGTCTCTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>362 238 144 138 118</canonical_bands>
                <polymorphic_bands>480 238 144 138</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>139 138 132 118 96 90 89 59 45 32 32 17 9 4</canonical_bands>
                <polymorphic_bands>207 139 138 132 96 90 59 45 32 32 17 9 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGATAACCCAGAGTTTGAAAGA</pcr_primer_p1>
		<pcr_primer_p2>CACTTTTGATACCGAAGACAGT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTCCGAAGGTTGAGAGCTTCTTGGAATATTGTGGAAAATTGGATGAGGCATTCGTATTTCTAACGGGCAGGAAGAATTTGGATGACGCTGCGGATAAACTTTTAGCCACCGGATACTTTTCGGTTTTAAAAAATCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATCAAGACGTCAAGACTGTCTTCGGTATCAAAAGTG</canonical_amplicon>
		<polymorphic_amplicon>AAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTCCGAAGGTTGAGARCTTCTTGGAATATTGTGGAAAATTGGATGAGGCATTCGTATTTCTAACGGGCAGGAAGAATTTGGATGACGCTGCGGATAAACTTTTAGCCACCGGATACTTTTCGGTTTTAAAAAATCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATCAAGACGTCAAGACTGTCTTCGGTATCAAAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9995</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>32288</contig_pos>
        <strand>+</strand>
        <context>CYYTGGAAGC[A/T]ATTCGAAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGC</left_flank>
        <right_flank>ATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTAGAGAATTCATCTACCGTAAAACCTGTATTAGAAGGGCCGGTCTATGAGAGGGGCTTTTCTATTACGGGGGCCCTTCTATTACAGGGGCCCTTCTAATACATGACCTACGGTAATTGTTCAATGAACATTTTCGGAAAAAATGGCCGGAAACAAAGAAAGGCCATCCAGAAGTTTCTTGTACCAATAGACGGGCCGGCCCTTCTAATAGAGATTTTACAGTAATTCAAAGAATTATTTTCAGATAAAATTCTCCAGCTCTCCGTTGATCGTATGGAAAAAATCGCAAGAATCACATATGGAATTTATGTTCAAAAAGGATTAACCGACGGTGAAATTTCCATTGACGAGATTTTCAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTCCGAAGGTTGAGAGCTTCTTGGAATATTGTGGAAAATTGGATGAGGCATTCGTATTTCTAACGGGCAGGAAGAATTTGGATGACGCTGCGGATAAACTTTTAGCCACCGGATACTTTTCGGTTTTAAAAAATCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATCAAGACGTCAAGACTGTCTTCGGTATCAAAAGTGTCAAGGATCCATTATCAGTGATTTTCCAAGCCACGGATGCTTCCAAAGAATTCAATAAACAAACCAAATCGTTTACTGTAGATCCTGATGCTAGAAACAAGAATTTTGAGAATTTCAAGGATATTTGGGAATATTCTCAAAAGTCTAATACAAATATTCAAGCTCTAAAATCAATTGAAGATTT</canonical>
            <polymorphic>TTTTAGAGAATTCATCTACCGTAAAACCTGTATTAGAAGGGCCGGTCTATGAGAGGGGCTTTTCTATTACGGGGGCCCTTCTATTACAGGGGCCCTTCTAATACATGACCTACGGTAATTGTTCAATGAACATTTTCGGAAAAAATGGCCGGAAACAAAGAAAGGCCATCCAGAAGTTTCTTGTACCAATAGACGGGCCGGCCCTTCTAATAGAGATTTTACAGTAATTCAAAGAATTATTTTCAGATAAAATTCTCCAGCTCTCCGTTGATCGTATGGAAAAAATCGCAAGAATCACATATGGAATTTATGTTCAAAAAGGATTAACCGACGGTGAAATTTCCATTGACGAGATTTTCAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCWATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTCCGAAGGTTGAGAGCTTCTTGGAATATTGTGGAAAATTGGATGAGGCATTCGTATTTCTAACGGGCAGGAAGAATTTGGATGACGCTGCGGATAAACTTTTAGCCACCGGATACTTTTCGGTTTTAAAAAATCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATCAAGACGTCAAGACTGTCTTCGGTATCAAAAGTGTCAAGGATCCATTATCAGTGATTTTCCAAGCCACGGATGCTTCCAAAGAATTCAATAAACAAACCAAATCGTTTACTGTAGATCCTGATGCTAGAAACAAGAATTTTGAGAATTTCAAGGATATTTGGGAATATTCTCAAAAGTCTAATACAAATATTCAAGCTCTAAAATCAATTGAAGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>362 260 238 118 22</canonical_bands>
                <polymorphic_bands>362 356 260 22</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>139 132 118 96 90 89 59 56 45 41 32 22 17 17 17 17 9 4</canonical_bands>
                <polymorphic_bands>139 132 127 96 90 89 59 56 45 41 32 22 17 17 17 17 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAATCAAGAATCTGAATCAAG</pcr_primer_p1>
		<pcr_primer_p2>GAAGATCGATTTCCTTATCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTC</canonical_amplicon>
		<polymorphic_amplicon>CAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCWATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9996</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>32276</contig_pos>
        <strand>+</strand>
        <context>RATATTTYCT[A/G]GCYYTGGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCT</left_flank>
        <right_flank>GCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAAAAATGAATTTTAGAGAATTCATCTACCGTAAAACCTGTATTAGAAGGGCCGGTCTATGAGAGGGGCTTTTCTATTACGGGGGCCCTTCTATTACAGGGGCCCTTCTAATACATGACCTACGGTAATTGTTCAATGAACATTTTCGGAAAAAATGGCCGGAAACAAAGAAAGGCCATCCAGAAGTTTCTTGTACCAATAGACGGGCCGGCCCTTCTAATAGAGATTTTACAGTAATTCAAAGAATTATTTTCAGATAAAATTCTCCAGCTCTCCGTTGATCGTATGGAAAAAATCGCAAGAATCACATATGGAATTTATGTTCAAAAAGGATTAACCGACGGTGAAATTTCCATTGACGAGATTTTCAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTCCGAAGGTTGAGAGCTTCTTGGAATATTGTGGAAAATTGGATGAGGCATTCGTATTTCTAACGGGCAGGAAGAATTTGGATGACGCTGCGGATAAACTTTTAGCCACCGGATACTTTTCGGTTTTAAAAAATCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATCAAGACGTCAAGACTGTCTTCGGTATCAAAAGTGTCAAGGATCCATTATCAGTGATTTTCCAAGCCACGGATGCTTCCAAAGAATTCAATAAACAAACCAAATCGTTTACTGTAGATCCTGATGCTAGAAACAAGAATTTTGAGAATTTCAAGGATATTTGGGAATATTCTCAAAAGTCTAATACAAATATTCAAGCTCTAAAATC</canonical>
            <polymorphic>TAAAAAAATGAATTTTAGAGAATTCATCTACCGTAAAACCTGTATTAGAAGGGCCGGTCTATGAGAGGGGCTTTTCTATTACGGGGGCCCTTCTATTACAGGGGCCCTTCTAATACATGACCTACGGTAATTGTTCAATGAACATTTTCGGAAAAAATGGCCGGAAACAAAGAAAGGCCATCCAGAAGTTTCTTGTACCAATAGACGGGCCGGCCCTTCTAATAGAGATTTTACAGTAATTCAAAGAATTATTTTCAGATAAAATTCTCCAGCTCTCCGTTGATCGTATGGAAAAAATCGCAAGAATCACATATGGAATTTATGTTCAAAAAGGATTAACCGACGGTGAAATTTCCATTGACGAGATTTTCAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTRGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTCCGAAGGTTGAGAGCTTCTTGGAATATTGTGGAAAATTGGATGAGGCATTCGTATTTCTAACGGGCAGGAAGAATTTGGATGACGCTGCGGATAAACTTTTAGCCACCGGATACTTTTCGGTTTTAAAAAATCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATCAAGACGTCAAGACTGTCTTCGGTATCAAAAGTGTCAAGGATCCATTATCAGTGATTTTCCAAGCCACGGATGCTTCCAAAGAATTCAATAAACAAACCAAATCGTTTACTGTAGATCCTGATGCTAGAAACAAGAATTTTGAGAATTTCAAGGATATTTGGGAATATTCTCAAAAGTCTAATACAAATATTCAAGCTCTAAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>502 414 84</canonical_bands>
                <polymorphic_bands>586 414</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>502 414 84</canonical_bands>
                <polymorphic_bands>586 414</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>139 132 118 96 90 89 59 56 53 45 32 17 17 17 17 10 9 4</canonical_bands>
                <polymorphic_bands>139 132 118 99 96 89 59 56 53 45 32 17 17 17 17 10 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAATCAAGAATCTGAATCAAG</pcr_primer_p1>
		<pcr_primer_p2>GAAGATCGATTTCCTTATCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTC</canonical_amplicon>
		<polymorphic_amplicon>CAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTRGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9997</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>32273</contig_pos>
        <strand>+</strand>
        <context>ARMRATATTT[C/T]CTRGCYYTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTT</left_flank>
        <right_flank>CTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTAAAAAAATGAATTTTAGAGAATTCATCTACCGTAAAACCTGTATTAGAAGGGCCGGTCTATGAGAGGGGCTTTTCTATTACGGGGGCCCTTCTATTACAGGGGCCCTTCTAATACATGACCTACGGTAATTGTTCAATGAACATTTTCGGAAAAAATGGCCGGAAACAAAGAAAGGCCATCCAGAAGTTTCTTGTACCAATAGACGGGCCGGCCCTTCTAATAGAGATTTTACAGTAATTCAAAGAATTATTTTCAGATAAAATTCTCCAGCTCTCCGTTGATCGTATGGAAAAAATCGCAAGAATCACATATGGAATTTATGTTCAAAAAGGATTAACCGACGGTGAAATTTCCATTGACGAGATTTTCAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTCCGAAGGTTGAGAGCTTCTTGGAATATTGTGGAAAATTGGATGAGGCATTCGTATTTCTAACGGGCAGGAAGAATTTGGATGACGCTGCGGATAAACTTTTAGCCACCGGATACTTTTCGGTTTTAAAAAATCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATCAAGACGTCAAGACTGTCTTCGGTATCAAAAGTGTCAAGGATCCATTATCAGTGATTTTCCAAGCCACGGATGCTTCCAAAGAATTCAATAAACAAACCAAATCGTTTACTGTAGATCCTGATGCTAGAAACAAGAATTTTGAGAATTTCAAGGATATTTGGGAATATTCTCAAAAGTCTAATACAAATATTCAAGCTCTAAA</canonical>
            <polymorphic>ATGTAAAAAAATGAATTTTAGAGAATTCATCTACCGTAAAACCTGTATTAGAAGGGCCGGTCTATGAGAGGGGCTTTTCTATTACGGGGGCCCTTCTATTACAGGGGCCCTTCTAATACATGACCTACGGTAATTGTTCAATGAACATTTTCGGAAAAAATGGCCGGAAACAAAGAAAGGCCATCCAGAAGTTTCTTGTACCAATAGACGGGCCGGCCCTTCTAATAGAGATTTTACAGTAATTCAAAGAATTATTTTCAGATAAAATTCTCCAGCTCTCCGTTGATCGTATGGAAAAAATCGCAAGAATCACATATGGAATTTATGTTCAAAAAGGATTAACCGACGGTGAAATTTCCATTGACGAGATTTTCAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTYCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTCCGAAGGTTGAGAGCTTCTTGGAATATTGTGGAAAATTGGATGAGGCATTCGTATTTCTAACGGGCAGGAAGAATTTGGATGACGCTGCGGATAAACTTTTAGCCACCGGATACTTTTCGGTTTTAAAAAATCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATCAAGACGTCAAGACTGTCTTCGGTATCAAAAGTGTCAAGGATCCATTATCAGTGATTTTCCAAGCCACGGATGCTTCCAAAGAATTCAATAAACAAACCAAATCGTTTACTGTAGATCCTGATGCTAGAAACAAGAATTTTGAGAATTTCAAGGATATTTGGGAATATTCTCAAAAGTCTAATACAAATATTCAAGCTCTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>499 417 84</canonical_bands>
                <polymorphic_bands>583 417</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>357 299 207 137</canonical_bands>
                <polymorphic_bands>656 207 137</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>499 417 84</canonical_bands>
                <polymorphic_bands>583 417</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAATCAAGAATCTGAATCAAG</pcr_primer_p1>
		<pcr_primer_p2>GAAGATCGATTTCCTTATCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTC</canonical_amplicon>
		<polymorphic_amplicon>CAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTYCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9998</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>32266</contig_pos>
        <strand>+</strand>
        <context>AWGAATCARM[A/G]ATATTTYCTR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGC</left_flank>
        <right_flank>ATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAAATATGTAAAAAAATGAATTTTAGAGAATTCATCTACCGTAAAACCTGTATTAGAAGGGCCGGTCTATGAGAGGGGCTTTTCTATTACGGGGGCCCTTCTATTACAGGGGCCCTTCTAATACATGACCTACGGTAATTGTTCAATGAACATTTTCGGAAAAAATGGCCGGAAACAAAGAAAGGCCATCCAGAAGTTTCTTGTACCAATAGACGGGCCGGCCCTTCTAATAGAGATTTTACAGTAATTCAAAGAATTATTTTCAGATAAAATTCTCCAGCTCTCCGTTGATCGTATGGAAAAAATCGCAAGAATCACATATGGAATTTATGTTCAAAAAGGATTAACCGACGGTGAAATTTCCATTGACGAGATTTTCAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTCCGAAGGTTGAGAGCTTCTTGGAATATTGTGGAAAATTGGATGAGGCATTCGTATTTCTAACGGGCAGGAAGAATTTGGATGACGCTGCGGATAAACTTTTAGCCACCGGATACTTTTCGGTTTTAAAAAATCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATCAAGACGTCAAGACTGTCTTCGGTATCAAAAGTGTCAAGGATCCATTATCAGTGATTTTCCAAGCCACGGATGCTTCCAAAGAATTCAATAAACAAACCAAATCGTTTACTGTAGATCCTGATGCTAGAAACAAGAATTTTGAGAATTTCAAGGATATTTGGGAATATTCTCAAAAGTCTAATACAAATATTCAAG</canonical>
            <polymorphic>ATGAAATATGTAAAAAAATGAATTTTAGAGAATTCATCTACCGTAAAACCTGTATTAGAAGGGCCGGTCTATGAGAGGGGCTTTTCTATTACGGGGGCCCTTCTATTACAGGGGCCCTTCTAATACATGACCTACGGTAATTGTTCAATGAACATTTTCGGAAAAAATGGCCGGAAACAAAGAAAGGCCATCCAGAAGTTTCTTGTACCAATAGACGGGCCGGCCCTTCTAATAGAGATTTTACAGTAATTCAAAGAATTATTTTCAGATAAAATTCTCCAGCTCTCCGTTGATCGTATGGAAAAAATCGCAAGAATCACATATGGAATTTATGTTCAAAAAGGATTAACCGACGGTGAAATTTCCATTGACGAGATTTTCAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCRATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTCCGAAGGTTGAGAGCTTCTTGGAATATTGTGGAAAATTGGATGAGGCATTCGTATTTCTAACGGGCAGGAAGAATTTGGATGACGCTGCGGATAAACTTTTAGCCACCGGATACTTTTCGGTTTTAAAAAATCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATCAAGACGTCAAGACTGTCTTCGGTATCAAAAGTGTCAAGGATCCATTATCAGTGATTTTCCAAGCCACGGATGCTTCCAAAGAATTCAATAAACAAACCAAATCGTTTACTGTAGATCCTGATGCTAGAAACAAGAATTTTGAGAATTTCAAGGATATTTGGGAATATTCTCAAAAGTCTAATACAAATATTCAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 321 147 23 7</canonical_bands>
                <polymorphic_bands>649 321 23 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAATCAAGAATCTGAATCAAG</pcr_primer_p1>
		<pcr_primer_p2>GAAGATCGATTTCCTTATCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTC</canonical_amplicon>
		<polymorphic_amplicon>CAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCRATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb9999</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>32265</contig_pos>
        <strand>+</strand>
        <context>GAWGAATCAR[A/C]RATATTTYCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAG</left_flank>
        <right_flank>AATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGAAATATGTAAAAAAATGAATTTTAGAGAATTCATCTACCGTAAAACCTGTATTAGAAGGGCCGGTCTATGAGAGGGGCTTTTCTATTACGGGGGCCCTTCTATTACAGGGGCCCTTCTAATACATGACCTACGGTAATTGTTCAATGAACATTTTCGGAAAAAATGGCCGGAAACAAAGAAAGGCCATCCAGAAGTTTCTTGTACCAATAGACGGGCCGGCCCTTCTAATAGAGATTTTACAGTAATTCAAAGAATTATTTTCAGATAAAATTCTCCAGCTCTCCGTTGATCGTATGGAAAAAATCGCAAGAATCACATATGGAATTTATGTTCAAAAAGGATTAACCGACGGTGAAATTTCCATTGACGAGATTTTCAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTCCGAAGGTTGAGAGCTTCTTGGAATATTGTGGAAAATTGGATGAGGCATTCGTATTTCTAACGGGCAGGAAGAATTTGGATGACGCTGCGGATAAACTTTTAGCCACCGGATACTTTTCGGTTTTAAAAAATCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATCAAGACGTCAAGACTGTCTTCGGTATCAAAAGTGTCAAGGATCCATTATCAGTGATTTTCCAAGCCACGGATGCTTCCAAAGAATTCAATAAACAAACCAAATCGTTTACTGTAGATCCTGATGCTAGAAACAAGAATTTTGAGAATTTCAAGGATATTTGGGAATATTCTCAAAAGTCTAATACAAATATTCAA</canonical>
            <polymorphic>CATGAAATATGTAAAAAAATGAATTTTAGAGAATTCATCTACCGTAAAACCTGTATTAGAAGGGCCGGTCTATGAGAGGGGCTTTTCTATTACGGGGGCCCTTCTATTACAGGGGCCCTTCTAATACATGACCTACGGTAATTGTTCAATGAACATTTTCGGAAAAAATGGCCGGAAACAAAGAAAGGCCATCCAGAAGTTTCTTGTACCAATAGACGGGCCGGCCCTTCTAATAGAGATTTTACAGTAATTCAAAGAATTATTTTCAGATAAAATTCTCCAGCTCTCCGTTGATCGTATGGAAAAAATCGCAAGAATCACATATGGAATTTATGTTCAAAAAGGATTAACCGACGGTGAAATTTCCATTGACGAGATTTTCAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGMAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTCCGAAGGTTGAGAGCTTCTTGGAATATTGTGGAAAATTGGATGAGGCATTCGTATTTCTAACGGGCAGGAAGAATTTGGATGACGCTGCGGATAAACTTTTAGCCACCGGATACTTTTCGGTTTTAAAAAATCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATCAAGACGTCAAGACTGTCTTCGGTATCAAAAGTGTCAAGGATCCATTATCAGTGATTTTCCAAGCCACGGATGCTTCCAAAGAATTCAATAAACAAACCAAATCGTTTACTGTAGATCCTGATGCTAGAAACAAGAATTTTGAGAATTTCAAGGATATTTGGGAATATTCTCAAAAGTCTAATACAAATATTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATCAAGAATCTGAATCAAG</pcr_primer_p1>
		<pcr_primer_p2>GAAGATCGATTTCCTTATCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTC</canonical_amplicon>
		<polymorphic_amplicon>CAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGMAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10000</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>32264</contig_pos>
        <strand>+</strand>
        <context>WGAWGAATCA[A/G]MRATATTTYC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCA</left_flank>
        <right_flank>CAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATGAAATATGTAAAAAAATGAATTTTAGAGAATTCATCTACCGTAAAACCTGTATTAGAAGGGCCGGTCTATGAGAGGGGCTTTTCTATTACGGGGGCCCTTCTATTACAGGGGCCCTTCTAATACATGACCTACGGTAATTGTTCAATGAACATTTTCGGAAAAAATGGCCGGAAACAAAGAAAGGCCATCCAGAAGTTTCTTGTACCAATAGACGGGCCGGCCCTTCTAATAGAGATTTTACAGTAATTCAAAGAATTATTTTCAGATAAAATTCTCCAGCTCTCCGTTGATCGTATGGAAAAAATCGCAAGAATCACATATGGAATTTATGTTCAAAAAGGATTAACCGACGGTGAAATTTCCATTGACGAGATTTTCAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTCCGAAGGTTGAGAGCTTCTTGGAATATTGTGGAAAATTGGATGAGGCATTCGTATTTCTAACGGGCAGGAAGAATTTGGATGACGCTGCGGATAAACTTTTAGCCACCGGATACTTTTCGGTTTTAAAAAATCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATCAAGACGTCAAGACTGTCTTCGGTATCAAAAGTGTCAAGGATCCATTATCAGTGATTTTCCAAGCCACGGATGCTTCCAAAGAATTCAATAAACAAACCAAATCGTTTACTGTAGATCCTGATGCTAGAAACAAGAATTTTGAGAATTTCAAGGATATTTGGGAATATTCTCAAAAGTCTAATACAAATATTCA</canonical>
            <polymorphic>TCATGAAATATGTAAAAAAATGAATTTTAGAGAATTCATCTACCGTAAAACCTGTATTAGAAGGGCCGGTCTATGAGAGGGGCTTTTCTATTACGGGGGCCCTTCTATTACAGGGGCCCTTCTAATACATGACCTACGGTAATTGTTCAATGAACATTTTCGGAAAAAATGGCCGGAAACAAAGAAAGGCCATCCAGAAGTTTCTTGTACCAATAGACGGGCCGGCCCTTCTAATAGAGATTTTACAGTAATTCAAAGAATTATTTTCAGATAAAATTCTCCAGCTCTCCGTTGATCGTATGGAAAAAATCGCAAGAATCACATATGGAATTTATGTTCAAAAAGGATTAACCGACGGTGAAATTTCCATTGACGAGATTTTCAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCARCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTCCGAAGGTTGAGAGCTTCTTGGAATATTGTGGAAAATTGGATGAGGCATTCGTATTTCTAACGGGCAGGAAGAATTTGGATGACGCTGCGGATAAACTTTTAGCCACCGGATACTTTTCGGTTTTAAAAAATCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATCAAGACGTCAAGACTGTCTTCGGTATCAAAAGTGTCAAGGATCCATTATCAGTGATTTTCCAAGCCACGGATGCTTCCAAAGAATTCAATAAACAAACCAAATCGTTTACTGTAGATCCTGATGCTAGAAACAAGAATTTTGAGAATTTCAAGGATATTTGGGAATATTCTCAAAAGTCTAATACAAATATTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATCAAGAATCTGAATCAAG</pcr_primer_p1>
		<pcr_primer_p2>GAAGATCGATTTCCTTATCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTC</canonical_amplicon>
		<polymorphic_amplicon>CAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCARCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10004</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>32254</contig_pos>
        <strand>+</strand>
        <context>CMAGATATCG[A/T]GAWGAATCAR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCG</left_flank>
        <right_flank>GAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATAGATTTTCATGAAATATGTAAAAAAATGAATTTTAGAGAATTCATCTACCGTAAAACCTGTATTAGAAGGGCCGGTCTATGAGAGGGGCTTTTCTATTACGGGGGCCCTTCTATTACAGGGGCCCTTCTAATACATGACCTACGGTAATTGTTCAATGAACATTTTCGGAAAAAATGGCCGGAAACAAAGAAAGGCCATCCAGAAGTTTCTTGTACCAATAGACGGGCCGGCCCTTCTAATAGAGATTTTACAGTAATTCAAAGAATTATTTTCAGATAAAATTCTCCAGCTCTCCGTTGATCGTATGGAAAAAATCGCAAGAATCACATATGGAATTTATGTTCAAAAAGGATTAACCGACGGTGAAATTTCCATTGACGAGATTTTCAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTCCGAAGGTTGAGAGCTTCTTGGAATATTGTGGAAAATTGGATGAGGCATTCGTATTTCTAACGGGCAGGAAGAATTTGGATGACGCTGCGGATAAACTTTTAGCCACCGGATACTTTTCGGTTTTAAAAAATCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATCAAGACGTCAAGACTGTCTTCGGTATCAAAAGTGTCAAGGATCCATTATCAGTGATTTTCCAAGCCACGGATGCTTCCAAAGAATTCAATAAACAAACCAAATCGTTTACTGTAGATCCTGATGCTAGAAACAAGAATTTTGAGAATTTCAAGGATATTTGGGAATATTCTCAAAAGTCTAATA</canonical>
            <polymorphic>TGATAGATTTTCATGAAATATGTAAAAAAATGAATTTTAGAGAATTCATCTACCGTAAAACCTGTATTAGAAGGGCCGGTCTATGAGAGGGGCTTTTCTATTACGGGGGCCCTTCTATTACAGGGGCCCTTCTAATACATGACCTACGGTAATTGTTCAATGAACATTTTCGGAAAAAATGGCCGGAAACAAAGAAAGGCCATCCAGAAGTTTCTTGTACCAATAGACGGGCCGGCCCTTCTAATAGAGATTTTACAGTAATTCAAAGAATTATTTTCAGATAAAATTCTCCAGCTCTCCGTTGATCGTATGGAAAAAATCGCAAGAATCACATATGGAATTTATGTTCAAAAAGGATTAACCGACGGTGAAATTTCCATTGACGAGATTTTCAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGWGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTCCGAAGGTTGAGAGCTTCTTGGAATATTGTGGAAAATTGGATGAGGCATTCGTATTTCTAACGGGCAGGAAGAATTTGGATGACGCTGCGGATAAACTTTTAGCCACCGGATACTTTTCGGTTTTAAAAAATCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATCAAGACGTCAAGACTGTCTTCGGTATCAAAAGTGTCAAGGATCCATTATCAGTGATTTTCCAAGCCACGGATGCTTCCAAAGAATTCAATAAACAAACCAAATCGTTTACTGTAGATCCTGATGCTAGAAACAAGAATTTTGAGAATTTCAAGGATATTTGGGAATATTCTCAAAAGTCTAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>420 231 139 92 78 40</canonical_bands>
                <polymorphic_bands>420 231 139 118 92</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAATCAAGAATCTGAATCAAG</pcr_primer_p1>
		<pcr_primer_p2>GAAGATCGATTTCCTTATCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTC</canonical_amplicon>
		<polymorphic_amplicon>CAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGWGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10006</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>32245</contig_pos>
        <strand>+</strand>
        <context>AGAAAAAGYC[A/C]AGATATCGWG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTC</left_flank>
        <right_flank>AGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATGAAATTGATAGATTTTCATGAAATATGTAAAAAAATGAATTTTAGAGAATTCATCTACCGTAAAACCTGTATTAGAAGGGCCGGTCTATGAGAGGGGCTTTTCTATTACGGGGGCCCTTCTATTACAGGGGCCCTTCTAATACATGACCTACGGTAATTGTTCAATGAACATTTTCGGAAAAAATGGCCGGAAACAAAGAAAGGCCATCCAGAAGTTTCTTGTACCAATAGACGGGCCGGCCCTTCTAATAGAGATTTTACAGTAATTCAAAGAATTATTTTCAGATAAAATTCTCCAGCTCTCCGTTGATCGTATGGAAAAAATCGCAAGAATCACATATGGAATTTATGTTCAAAAAGGATTAACCGACGGTGAAATTTCCATTGACGAGATTTTCAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTCCGAAGGTTGAGAGCTTCTTGGAATATTGTGGAAAATTGGATGAGGCATTCGTATTTCTAACGGGCAGGAAGAATTTGGATGACGCTGCGGATAAACTTTTAGCCACCGGATACTTTTCGGTTTTAAAAAATCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATCAAGACGTCAAGACTGTCTTCGGTATCAAAAGTGTCAAGGATCCATTATCAGTGATTTTCCAAGCCACGGATGCTTCCAAAGAATTCAATAAACAAACCAAATCGTTTACTGTAGATCCTGATGCTAGAAACAAGAATTTTGAGAATTTCAAGGATATTTGGGAATATTCTCAAA</canonical>
            <polymorphic>CGATGAAATTGATAGATTTTCATGAAATATGTAAAAAAATGAATTTTAGAGAATTCATCTACCGTAAAACCTGTATTAGAAGGGCCGGTCTATGAGAGGGGCTTTTCTATTACGGGGGCCCTTCTATTACAGGGGCCCTTCTAATACATGACCTACGGTAATTGTTCAATGAACATTTTCGGAAAAAATGGCCGGAAACAAAGAAAGGCCATCCAGAAGTTTCTTGTACCAATAGACGGGCCGGCCCTTCTAATAGAGATTTTACAGTAATTCAAAGAATTATTTTCAGATAAAATTCTCCAGCTCTCCGTTGATCGTATGGAAAAAATCGCAAGAATCACATATGGAATTTATGTTCAAAAAGGATTAACCGACGGTGAAATTTCCATTGACGAGATTTTCAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCMAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTCCGAAGGTTGAGAGCTTCTTGGAATATTGTGGAAAATTGGATGAGGCATTCGTATTTCTAACGGGCAGGAAGAATTTGGATGACGCTGCGGATAAACTTTTAGCCACCGGATACTTTTCGGTTTTAAAAAATCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATCAAGACGTCAAGACTGTCTTCGGTATCAAAAGTGTCAAGGATCCATTATCAGTGATTTTCCAAGCCACGGATGCTTCCAAAGAATTCAATAAACAAACCAAATCGTTTACTGTAGATCCTGATGCTAGAAACAAGAATTTTGAGAATTTCAAGGATATTTGGGAATATTCTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATCAAGAATCTGAATCAAG</pcr_primer_p1>
		<pcr_primer_p2>GAAGATCGATTTCCTTATCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTC</canonical_amplicon>
		<polymorphic_amplicon>CAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCMAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10007</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>32243</contig_pos>
        <strand>+</strand>
        <context>TGAGAAAAAG[C/T]CMAGATATCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAG</left_flank>
        <right_flank>CCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGATGAAATTGATAGATTTTCATGAAATATGTAAAAAAATGAATTTTAGAGAATTCATCTACCGTAAAACCTGTATTAGAAGGGCCGGTCTATGAGAGGGGCTTTTCTATTACGGGGGCCCTTCTATTACAGGGGCCCTTCTAATACATGACCTACGGTAATTGTTCAATGAACATTTTCGGAAAAAATGGCCGGAAACAAAGAAAGGCCATCCAGAAGTTTCTTGTACCAATAGACGGGCCGGCCCTTCTAATAGAGATTTTACAGTAATTCAAAGAATTATTTTCAGATAAAATTCTCCAGCTCTCCGTTGATCGTATGGAAAAAATCGCAAGAATCACATATGGAATTTATGTTCAAAAAGGATTAACCGACGGTGAAATTTCCATTGACGAGATTTTCAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTCCGAAGGTTGAGAGCTTCTTGGAATATTGTGGAAAATTGGATGAGGCATTCGTATTTCTAACGGGCAGGAAGAATTTGGATGACGCTGCGGATAAACTTTTAGCCACCGGATACTTTTCGGTTTTAAAAAATCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATCAAGACGTCAAGACTGTCTTCGGTATCAAAAGTGTCAAGGATCCATTATCAGTGATTTTCCAAGCCACGGATGCTTCCAAAGAATTCAATAAACAAACCAAATCGTTTACTGTAGATCCTGATGCTAGAAACAAGAATTTTGAGAATTTCAAGGATATTTGGGAATATTCTCA</canonical>
            <polymorphic>TTCGATGAAATTGATAGATTTTCATGAAATATGTAAAAAAATGAATTTTAGAGAATTCATCTACCGTAAAACCTGTATTAGAAGGGCCGGTCTATGAGAGGGGCTTTTCTATTACGGGGGCCCTTCTATTACAGGGGCCCTTCTAATACATGACCTACGGTAATTGTTCAATGAACATTTTCGGAAAAAATGGCCGGAAACAAAGAAAGGCCATCCAGAAGTTTCTTGTACCAATAGACGGGCCGGCCCTTCTAATAGAGATTTTACAGTAATTCAAAGAATTATTTTCAGATAAAATTCTCCAGCTCTCCGTTGATCGTATGGAAAAAATCGCAAGAATCACATATGGAATTTATGTTCAAAAAGGATTAACCGACGGTGAAATTTCCATTGACGAGATTTTCAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGYCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTCCGAAGGTTGAGAGCTTCTTGGAATATTGTGGAAAATTGGATGAGGCATTCGTATTTCTAACGGGCAGGAAGAATTTGGATGACGCTGCGGATAAACTTTTAGCCACCGGATACTTTTCGGTTTTAAAAAATCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATCAAGACGTCAAGACTGTCTTCGGTATCAAAAGTGTCAAGGATCCATTATCAGTGATTTTCCAAGCCACGGATGCTTCCAAAGAATTCAATAAACAAACCAAATCGTTTACTGTAGATCCTGATGCTAGAAACAAGAATTTTGAGAATTTCAAGGATATTTGGGAATATTCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>233 195 192 109 62 58 55 29 28 23 8 8</canonical_bands>
                <polymorphic_bands>233 195 192 109 70 58 55 29 28 23 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAATCAAGAATCTGAATCAAG</pcr_primer_p1>
		<pcr_primer_p2>GAAGATCGATTTCCTTATCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTC</canonical_amplicon>
		<polymorphic_amplicon>CAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGYCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10008</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>70052</contig_pos>
        <strand>+</strand>
        <context>CTCATTTTTG[A/T]CATTTTCCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTG</left_flank>
        <right_flank>CATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACATTTCAATCCAAAAACATGTCCACGGAGTTGATTGCTAGCAAAAATTAGGACCAAAGGAGAGCTGAAAAAAACTTATAGAATTCGGGTAAATTTTCAACAAATTTCATTGTCAAATTCAAACTCCCGAACCCCAAATTAGTCGAGAATCCAATTTTCAGCCATCTAGCTCGCAATTAATGTTTGCGTACTTTCGAAGCTACAGTAACCCGGAAAAATGAAAAATATTCAAAATCGAGCTAGAATGCTCTAGTTTTTTGTGTCGAGTGCCAAATTTTACAGTGATTTCGAATCTTTAAATCTTGAAACTGTCTTACCCAACATTCAAAACATCCCATGCAAATGGTTGTAATAAATACGCCATCCAATGTTTTGCCCAAAAAGAATTCAGCGCTTTAAAAGCTTCAAAAATCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACT</canonical>
            <polymorphic>AACATTTCAATCCAAAAACATGTCCACGGAGTTGATTGCTAGCAAAAATTAGGACCAAAGGAGAGCTGAAAAAAACTTATAGAATTCGGGTAAATTTTCAACAAATTTCATTGTCAAATTCAAACTCCCGAACCCCAAATTAGTCGAGAATCCAATTTTCAGCCATCTAGCTCGCAATTAATGTTTGCGTACTTTCGAAGCTACAGTAACCCGGAAAAATGAAAAATATTCAAAATCGAGCTAGAATGCTCTAGTTTTTTGTGTCGAGTGCCAAATTTTACAGTGATTTCGAATCTTTAAATCTTGAAACTGTCTTACCCAACATTCAAAACATCCCATGCAAATGGTTGTAATAAATACGCCATCCAATGTTTTGCCCAAAAAGAATTCAGCGCTTTAAAAGCTTCAAAAATCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGWCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGCAAATGGTTGTAATAAATA</pcr_primer_p1>
		<pcr_primer_p2>CTGGAATGTCTCTATTTCTGATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATGCAAATGGTTGTAATAAATACGCCATCCAATGTTTTGCCCAAAAAGAATTCAGCGCTTTAAAAGCTTCAAAAATCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAG</canonical_amplicon>
		<polymorphic_amplicon>CATGCAAATGGTTGTAATAAATACGCCATCCAATGTTTTGCCCAAAAAGAATTCAGCGCTTTAAAAGCTTCAAAAATCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGWCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10009</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>70080</contig_pos>
        <strand>+</strand>
        <context>TTACTGTAGA[A/G]ACTACAGTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGA</left_flank>
        <right_flank>ACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTTGATTGCTAGCAAAAATTAGGACCAAAGGAGAGCTGAAAAAAACTTATAGAATTCGGGTAAATTTTCAACAAATTTCATTGTCAAATTCAAACTCCCGAACCCCAAATTAGTCGAGAATCCAATTTTCAGCCATCTAGCTCGCAATTAATGTTTGCGTACTTTCGAAGCTACAGTAACCCGGAAAAATGAAAAATATTCAAAATCGAGCTAGAATGCTCTAGTTTTTTGTGTCGAGTGCCAAATTTTACAGTGATTTCGAATCTTTAAATCTTGAAACTGTCTTACCCAACATTCAAAACATCCCATGCAAATGGTTGTAATAAATACGCCATCCAATGTTTTGCCCAAAAAGAATTCAGCGCTTTAAAAGCTTCAAAAATCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATG</canonical>
            <polymorphic>GAGTTGATTGCTAGCAAAAATTAGGACCAAAGGAGAGCTGAAAAAAACTTATAGAATTCGGGTAAATTTTCAACAAATTTCATTGTCAAATTCAAACTCCCGAACCCCAAATTAGTCGAGAATCCAATTTTCAGCCATCTAGCTCGCAATTAATGTTTGCGTACTTTCGAAGCTACAGTAACCCGGAAAAATGAAAAATATTCAAAATCGAGCTAGAATGCTCTAGTTTTTTGTGTCGAGTGCCAAATTTTACAGTGATTTCGAATCTTTAAATCTTGAAACTGTCTTACCCAACATTCAAAACATCCCATGCAAATGGTTGTAATAAATACGCCATCCAATGTTTTGCCCAAAAAGAATTCAGCGCTTTAAAAGCTTCAAAAATCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGARACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGCAAATGGTTGTAATAAATA</pcr_primer_p1>
		<pcr_primer_p2>CTGGAATGTCTCTATTTCTGATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATGCAAATGGTTGTAATAAATACGCCATCCAATGTTTTGCCCAAAAAGAATTCAGCGCTTTAAAAGCTTCAAAAATCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAG</canonical_amplicon>
		<polymorphic_amplicon>CATGCAAATGGTTGTAATAAATACGCCATCCAATGTTTTGCCCAAAAAGAATTCAGCGCTTTAAAAGCTTCAAAAATCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGARACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10010</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>70101</contig_pos>
        <strand>+</strand>
        <context>TCCCAACTGC[A/T]ATCGATCGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGC</left_flank>
        <right_flank>ATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGACCAAAGGAGAGCTGAAAAAAACTTATAGAATTCGGGTAAATTTTCAACAAATTTCATTGTCAAATTCAAACTCCCGAACCCCAAATTAGTCGAGAATCCAATTTTCAGCCATCTAGCTCGCAATTAATGTTTGCGTACTTTCGAAGCTACAGTAACCCGGAAAAATGAAAAATATTCAAAATCGAGCTAGAATGCTCTAGTTTTTTGTGTCGAGTGCCAAATTTTACAGTGATTTCGAATCTTTAAATCTTGAAACTGTCTTACCCAACATTCAAAACATCCCATGCAAATGGTTGTAATAAATACGCCATCCAATGTTTTGCCCAAAAAGAATTCAGCGCTTTAAAAGCTTCAAAAATCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCC</canonical>
            <polymorphic>TAGGACCAAAGGAGAGCTGAAAAAAACTTATAGAATTCGGGTAAATTTTCAACAAATTTCATTGTCAAATTCAAACTCCCGAACCCCAAATTAGTCGAGAATCCAATTTTCAGCCATCTAGCTCGCAATTAATGTTTGCGTACTTTCGAAGCTACAGTAACCCGGAAAAATGAAAAATATTCAAAATCGAGCTAGAATGCTCTAGTTTTTTGTGTCGAGTGCCAAATTTTACAGTGATTTCGAATCTTTAAATCTTGAAACTGTCTTACCCAACATTCAAAACATCCCATGCAAATGGTTGTAATAAATACGCCATCCAATGTTTTGCCCAAAAAGAATTCAGCGCTTTAAAAGCTTCAAAAATCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCWATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACACAACGTCTTCTCTGATT</pcr_primer_p1>
		<pcr_primer_p2>CCCTTTTTATTTATCTGGAATACT</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>AAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGG</canonical_amplicon>
		<polymorphic_amplicon>AAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCWATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10011</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>70200</contig_pos>
        <strand>+</strand>
        <context>TCAGAATTTT[C/T]GGAGAAATTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTT</left_flank>
        <right_flank>GGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCCAATTTTCAGCCATCTAGCTCGCAATTAATGTTTGCGTACTTTCGAAGCTACAGTAACCCGGAAAAATGAAAAATATTCAAAATCGAGCTAGAATGCTCTAGTTTTTTGTGTCGAGTGCCAAATTTTACAGTGATTTCGAATCTTTAAATCTTGAAACTGTCTTACCCAACATTCAAAACATCCCATGCAAATGGTTGTAATAAATACGCCATCCAATGTTTTGCCCAAAAAGAATTCAGCGCTTTAAAAGCTTCAAAAATCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTG</canonical>
            <polymorphic>AATCCAATTTTCAGCCATCTAGCTCGCAATTAATGTTTGCGTACTTTCGAAGCTACAGTAACCCGGAAAAATGAAAAATATTCAAAATCGAGCTAGAATGCTCTAGTTTTTTGTGTCGAGTGCCAAATTTTACAGTGATTTCGAATCTTTAAATCTTGAAACTGTCTTACCCAACATTCAAAACATCCCATGCAAATGGTTGTAATAAATACGCCATCCAATGTTTTGCCCAAAAAGAATTCAGCGCTTTAAAAGCTTCAAAAATCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTYGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAAGAATCATCAGAAATAGAGA</pcr_primer_p1>
		<pcr_primer_p2>TGTTGTCAACCATTAATTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACA</canonical_amplicon>
		<polymorphic_amplicon>CGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTYGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10012</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>70236</contig_pos>
        <strand>+</strand>
        <context>ATAAAAAGGG[A/G]GTGATTAGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGG</left_flank>
        <right_flank>GTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCGTACTTTCGAAGCTACAGTAACCCGGAAAAATGAAAAATATTCAAAATCGAGCTAGAATGCTCTAGTTTTTTGTGTCGAGTGCCAAATTTTACAGTGATTTCGAATCTTTAAATCTTGAAACTGTCTTACCCAACATTCAAAACATCCCATGCAAATGGTTGTAATAAATACGCCATCCAATGTTTTGCCCAAAAAGAATTCAGCGCTTTAAAAGCTTCAAAAATCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAA</canonical>
            <polymorphic>TTGCGTACTTTCGAAGCTACAGTAACCCGGAAAAATGAAAAATATTCAAAATCGAGCTAGAATGCTCTAGTTTTTTGTGTCGAGTGCCAAATTTTACAGTGATTTCGAATCTTTAAATCTTGAAACTGTCTTACCCAACATTCAAAACATCCCATGCAAATGGTTGTAATAAATACGCCATCCAATGTTTTGCCCAAAAAGAATTCAGCGCTTTAAAAGCTTCAAAAATCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGRGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAAGAATCATCAGAAATAGAGA</pcr_primer_p1>
		<pcr_primer_p2>TGTTGTCAACCATTAATTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACA</canonical_amplicon>
		<polymorphic_amplicon>CGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGRGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10013</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>70265</contig_pos>
        <strand>+</strand>
        <context>ATAATAAATG[A/G]YAGATTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATG</left_flank>
        <right_flank>CAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAATGAAAAATATTCAAAATCGAGCTAGAATGCTCTAGTTTTTTGTGTCGAGTGCCAAATTTTACAGTGATTTCGAATCTTTAAATCTTGAAACTGTCTTACCCAACATTCAAAACATCCCATGCAAATGGTTGTAATAAATACGCCATCCAATGTTTTGCCCAAAAAGAATTCAGCGCTTTAAAAGCTTCAAAAATCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTT</canonical>
            <polymorphic>GAAAAATGAAAAATATTCAAAATCGAGCTAGAATGCTCTAGTTTTTTGTGTCGAGTGCCAAATTTTACAGTGATTTCGAATCTTTAAATCTTGAAACTGTCTTACCCAACATTCAAAACATCCCATGCAAATGGTTGTAATAAATACGCCATCCAATGTTTTGCCCAAAAAGAATTCAGCGCTTTAAAAGCTTCAAAAATCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGRCAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAAGAATCATCAGAAATAGAGA</pcr_primer_p1>
		<pcr_primer_p2>TGTTGTCAACCATTAATTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACA</canonical_amplicon>
		<polymorphic_amplicon>CGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGRCAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10014</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>70266</contig_pos>
        <strand>+</strand>
        <context>TAATAAATGR[C/T]AGATTTTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGA</left_flank>
        <right_flank>AGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATGAAAAATATTCAAAATCGAGCTAGAATGCTCTAGTTTTTTGTGTCGAGTGCCAAATTTTACAGTGATTTCGAATCTTTAAATCTTGAAACTGTCTTACCCAACATTCAAAACATCCCATGCAAATGGTTGTAATAAATACGCCATCCAATGTTTTGCCCAAAAAGAATTCAGCGCTTTAAAAGCTTCAAAAATCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTTG</canonical>
            <polymorphic>AAAAATGAAAAATATTCAAAATCGAGCTAGAATGCTCTAGTTTTTTGTGTCGAGTGCCAAATTTTACAGTGATTTCGAATCTTTAAATCTTGAAACTGTCTTACCCAACATTCAAAACATCCCATGCAAATGGTTGTAATAAATACGCCATCCAATGTTTTGCCCAAAAAGAATTCAGCGCTTTAAAAGCTTCAAAAATCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGAYAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAAGAATCATCAGAAATAGAGA</pcr_primer_p1>
		<pcr_primer_p2>TGTTGTCAACCATTAATTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACA</canonical_amplicon>
		<polymorphic_amplicon>CGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGAYAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10015</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>70376</contig_pos>
        <strand>+</strand>
        <context>AGGTAATTAA[A/G]AAATGGATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAA</left_flank>
        <right_flank>AAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAAAACATCCCATGCAAATGGTTGTAATAAATACGCCATCCAATGTTTTGCCCAAAAAGAATTCAGCGCTTTAAAAGCTTCAAAAATCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTTGTTCTTGAATTTTTGAATCTGCAGTAACCAAAAATATAGAAATTTTTTCACCCCCATTTGAGTCCTGTGGCCAGATCATTAAAAGAAAAATTCTGAGACTTTAGCGATTTC</canonical>
            <polymorphic>TTCAAAACATCCCATGCAAATGGTTGTAATAAATACGCCATCCAATGTTTTGCCCAAAAAGAATTCAGCGCTTTAAAAGCTTCAAAAATCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAARAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTTGTTCTTGAATTTTTGAATCTGCAGTAACCAAAAATATAGAAATTTTTTCACCCCCATTTGAGTCCTGTGGCCAGATCATTAAAAGAAAAATTCTGAGACTTTAGCGATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTCCAAATTTTGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>GAATTTTCAGGGTCTCCTACTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAARAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10016</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>70455</contig_pos>
        <strand>+</strand>
        <context>GAGGRRTATA[G/T]AYGWARAAWC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATA</left_flank>
        <right_flank>ACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCAAAAATCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTTGTTCTTGAATTTTTGAATCTGCAGTAACCAAAAATATAGAAATTTTTTCACCCCCATTTGAGTCCTGTGGCCAGATCATTAAAAGAAAAATTCTGAGACTTTAGCGATTTCAGAATTTCAGAAGAATTAAGATTCTGAACTTCGGAATTTTCGATTTTCAGAATTTCTAAGTTTTTGAGTTTCCAAATTT</canonical>
            <polymorphic>CTTCAAAAATCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATAKACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTTGTTCTTGAATTTTTGAATCTGCAGTAACCAAAAATATAGAAATTTTTTCACCCCCATTTGAGTCCTGTGGCCAGATCATTAAAAGAAAAATTCTGAGACTTTAGCGATTTCAGAATTTCAGAAGAATTAAGATTCTGAACTTCGGAATTTTCGATTTTCAGAATTTCTAAGTTTTTGAGTTTCCAAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TACGTA</site>
                <isoschizomers>
                    <enzyme>BstSNI</enzyme>
                    <enzyme>Eco105I</enzyme>
                    <enzyme>SnaBI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTCCAAATTTTGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>GAATTTTCAGGGTCTCCTACTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATAKACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10017</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>70457</contig_pos>
        <strand>+</strand>
        <context>GGRRTATAKA[C/T]GWARAAWCKA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATA</left_flank>
        <right_flank>GTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAAAATCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTTGTTCTTGAATTTTTGAATCTGCAGTAACCAAAAATATAGAAATTTTTTCACCCCCATTTGAGTCCTGTGGCCAGATCATTAAAAGAAAAATTCTGAGACTTTAGCGATTTCAGAATTTCAGAAGAATTAAGATTCTGAACTTCGGAATTTTCGATTTTCAGAATTTCTAAGTTTTTGAGTTTCCAAATTTTA</canonical>
            <polymorphic>TCAAAAATCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATAYGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTTGTTCTTGAATTTTTGAATCTGCAGTAACCAAAAATATAGAAATTTTTTCACCCCCATTTGAGTCCTGTGGCCAGATCATTAAAAGAAAAATTCTGAGACTTTAGCGATTTCAGAATTTCAGAAGAATTAAGATTCTGAACTTCGGAATTTTCGATTTTCAGAATTTCTAAGTTTTTGAGTTTCCAAATTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TACGTA</site>
                <isoschizomers>
                    <enzyme>BstSNI</enzyme>
                    <enzyme>Eco105I</enzyme>
                    <enzyme>SnaBI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>501 443 56</canonical_bands>
                <polymorphic_bands>944 56</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTCCAAATTTTGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>GAATTTTCAGGGTCTCCTACTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATAYGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10018</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>70459</contig_pos>
        <strand>+</strand>
        <context>RRTATAKAYG[A/T]ARAAWCKART</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACG</left_flank>
        <right_flank>AAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTTGTTCTTGAATTTTTGAATCTGCAGTAACCAAAAATATAGAAATTTTTTCACCCCCATTTGAGTCCTGTGGCCAGATCATTAAAAGAAAAATTCTGAGACTTTAGCGATTTCAGAATTTCAGAAGAATTAAGATTCTGAACTTCGGAATTTTCGATTTTCAGAATTTCTAAGTTTTTGAGTTTCCAAATTTTAGT</canonical>
            <polymorphic>AAAAATCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGWAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTTGTTCTTGAATTTTTGAATCTGCAGTAACCAAAAATATAGAAATTTTTTCACCCCCATTTGAGTCCTGTGGCCAGATCATTAAAAGAAAAATTCTGAGACTTTAGCGATTTCAGAATTTCAGAAGAATTAAGATTCTGAACTTCGGAATTTTCGATTTTCAGAATTTCTAAGTTTTTGAGTTTCCAAATTTTAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TACGTA</site>
                <isoschizomers>
                    <enzyme>BstSNI</enzyme>
                    <enzyme>Eco105I</enzyme>
                    <enzyme>SnaBI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>503 443 54</canonical_bands>
                <polymorphic_bands>946 54</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTCCAAATTTTGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>GAATTTTCAGGGTCTCCTACTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGWAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10019</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>70461</contig_pos>
        <strand>+</strand>
        <context>TATAKAYGWA[A/G]AAWCKARTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTA</left_flank>
        <right_flank>AATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTTGTTCTTGAATTTTTGAATCTGCAGTAACCAAAAATATAGAAATTTTTTCACCCCCATTTGAGTCCTGTGGCCAGATCATTAAAAGAAAAATTCTGAGACTTTAGCGATTTCAGAATTTCAGAAGAATTAAGATTCTGAACTTCGGAATTTTCGATTTTCAGAATTTCTAAGTTTTTGAGTTTCCAAATTTTAGTTT</canonical>
            <polymorphic>AAATCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTARAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTTGTTCTTGAATTTTTGAATCTGCAGTAACCAAAAATATAGAAATTTTTTCACCCCCATTTGAGTCCTGTGGCCAGATCATTAAAAGAAAAATTCTGAGACTTTAGCGATTTCAGAATTTCAGAAGAATTAAGATTCTGAACTTCGGAATTTTCGATTTTCAGAATTTCTAAGTTTTTGAGTTTCCAAATTTTAGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTCCAAATTTTGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>TGAATTTTCAGGGTCTCCTAC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTARAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10020</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>70464</contig_pos>
        <strand>+</strand>
        <context>AKAYGWARAA[A/T]CKARTGATGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAA</left_flank>
        <right_flank>CTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTTGTTCTTGAATTTTTGAATCTGCAGTAACCAAAAATATAGAAATTTTTTCACCCCCATTTGAGTCCTGTGGCCAGATCATTAAAAGAAAAATTCTGAGACTTTAGCGATTTCAGAATTTCAGAAGAATTAAGATTCTGAACTTCGGAATTTTCGATTTTCAGAATTTCTAAGTTTTTGAGTTTCCAAATTTTAGTTTTCG</canonical>
            <polymorphic>TCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAAWCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTTGTTCTTGAATTTTTGAATCTGCAGTAACCAAAAATATAGAAATTTTTTCACCCCCATTTGAGTCCTGTGGCCAGATCATTAAAAGAAAAATTCTGAGACTTTAGCGATTTCAGAATTTCAGAAGAATTAAGATTCTGAACTTCGGAATTTTCGATTTTCAGAATTTCTAAGTTTTTGAGTTTCCAAATTTTAGTTTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTCCAAATTTTGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>ATTGAATTTTCAGGGTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAAWCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10021</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>70466</contig_pos>
        <strand>+</strand>
        <context>AYGWARAAWC[G/T]ARTGATGAAW</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATC</left_flank>
        <right_flank>AGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTTGTTCTTGAATTTTTGAATCTGCAGTAACCAAAAATATAGAAATTTTTTCACCCCCATTTGAGTCCTGTGGCCAGATCATTAAAAGAAAAATTCTGAGACTTTAGCGATTTCAGAATTTCAGAAGAATTAAGATTCTGAACTTCGGAATTTTCGATTTTCAGAATTTCTAAGTTTTTGAGTTTCCAAATTTTAGTTTTCGAT</canonical>
            <polymorphic>GCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCKAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTTGTTCTTGAATTTTTGAATCTGCAGTAACCAAAAATATAGAAATTTTTTCACCCCCATTTGAGTCCTGTGGCCAGATCATTAAAAGAAAAATTCTGAGACTTTAGCGATTTCAGAATTTCAGAAGAATTAAGATTCTGAACTTCGGAATTTTCGATTTTCAGAATTTCTAAGTTTTTGAGTTTCCAAATTTTAGTTTTCGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>281 253 182 142 96 36 10</canonical_bands>
                <polymorphic_bands>281 253 182 178 96 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGACTGAAGACATTCGATTTA</pcr_primer_p1>
		<pcr_primer_p2>AACGATCAAATTCCCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>CGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTT</canonical_amplicon>
		<polymorphic_amplicon>CGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCKAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10022</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>70468</contig_pos>
        <strand>+</strand>
        <context>GWARAAWCKA[A/G]TGATGAAWAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTA</left_flank>
        <right_flank>TGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTTGTTCTTGAATTTTTGAATCTGCAGTAACCAAAAATATAGAAATTTTTTCACCCCCATTTGAGTCCTGTGGCCAGATCATTAAAAGAAAAATTCTGAGACTTTAGCGATTTCAGAATTTCAGAAGAATTAAGATTCTGAACTTCGGAATTTTCGATTTTCAGAATTTCTAAGTTTTTGAGTTTCCAAATTTTAGTTTTCGATTT</canonical>
            <polymorphic>TGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTARTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTTGTTCTTGAATTTTTGAATCTGCAGTAACCAAAAATATAGAAATTTTTTCACCCCCATTTGAGTCCTGTGGCCAGATCATTAAAAGAAAAATTCTGAGACTTTAGCGATTTCAGAATTTCAGAAGAATTAAGATTCTGAACTTCGGAATTTTCGATTTTCAGAATTTCTAAGTTTTTGAGTTTCCAAATTTTAGTTTTCGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>281 255 180 142 96 36 10</canonical_bands>
                <polymorphic_bands>281 255 180 178 96 10</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>170 134 127 126 97 90 74 58 33 31 28 19 11 2</canonical_bands>
                <polymorphic_bands>170 159 134 127 97 90 74 58 31 28 19 11 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGACTGAAGACATTCGATTTA</pcr_primer_p1>
		<pcr_primer_p2>AACGATCAAATTCCCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>CGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTT</canonical_amplicon>
		<polymorphic_amplicon>CGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTARTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10023</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>70476</contig_pos>
        <strand>+</strand>
        <context>KARTGATGAA[A/T]ATGTCAAGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAA</left_flank>
        <right_flank>ATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTTGTTCTTGAATTTTTGAATCTGCAGTAACCAAAAATATAGAAATTTTTTCACCCCCATTTGAGTCCTGTGGCCAGATCATTAAAAGAAAAATTCTGAGACTTTAGCGATTTCAGAATTTCAGAAGAATTAAGATTCTGAACTTCGGAATTTTCGATTTTCAGAATTTCTAAGTTTTTGAGTTTCCAAATTTTAGTTTTCGATTTGCCGAATT</canonical>
            <polymorphic>AAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAWATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTTGTTCTTGAATTTTTGAATCTGCAGTAACCAAAAATATAGAAATTTTTTCACCCCCATTTGAGTCCTGTGGCCAGATCATTAAAAGAAAAATTCTGAGACTTTAGCGATTTCAGAATTTCAGAAGAATTAAGATTCTGAACTTCGGAATTTTCGATTTTCAGAATTTCTAAGTTTTTGAGTTTCCAAATTTTAGTTTTCGATTTGCCGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGACTGAAGACATTCGATTTA</pcr_primer_p1>
		<pcr_primer_p2>AACGATCAAATTCCCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>CGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTT</canonical_amplicon>
		<polymorphic_amplicon>CGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAWATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10024</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>70521</contig_pos>
        <strand>+</strand>
        <context>TCAATTTTTT[G/T]AAAATTTTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTT</left_flank>
        <right_flank>AAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTTGTTCTTGAATTTTTGAATCTGCAGTAACCAAAAATATAGAAATTTTTTCACCCCCATTTGAGTCCTGTGGCCAGATCATTAAAAGAAAAATTCTGAGACTTTAGCGATTTCAGAATTTCAGAAGAATTAAGATTCTGAACTTCGGAATTTTCGATTTTCAGAATTTCTAAGTTTTTGAGTTTCCAAATTTTAGTTTTCGATTTGCCGAATTTGTTTTTATCCCCCAATTATCTCTTAATTAACCAAAAACCCACCA</canonical>
            <polymorphic>CTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTKAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTTGTTCTTGAATTTTTGAATCTGCAGTAACCAAAAATATAGAAATTTTTTCACCCCCATTTGAGTCCTGTGGCCAGATCATTAAAAGAAAAATTCTGAGACTTTAGCGATTTCAGAATTTCAGAAGAATTAAGATTCTGAACTTCGGAATTTTCGATTTTCAGAATTTCTAAGTTTTTGAGTTTCCAAATTTTAGTTTTCGATTTGCCGAATTTGTTTTTATCCCCCAATTATCTCTTAATTAACCAAAAACCCACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>325 324 123 108 48 26 25 17 4</canonical_bands>
                <polymorphic_bands>447 325 108 48 26 25 17 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAGCTAGATTCACAAAATTGA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCAAGAACAAACGACAA</pcr_primer_p2>
		<pcr_amplicon_size>353</pcr_amplicon_size>
		<canonical_amplicon>GGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTTGTTCTTGAATTT</canonical_amplicon>
		<polymorphic_amplicon>GGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTKAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTTGTTCTTGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10025</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>72612</contig_pos>
        <strand>+</strand>
        <context>TAGATTTCTG[A/G]TAAATTTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTG</left_flank>
        <right_flank>TAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAAATGTGATTACTGTAGAGACTACAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGAATTAAAAACGTTGAAAACCAATGAGTCCACTGACCAGTCTGAAGGTGTGAATTTCCTCTAAATTTTTGAATTATCGAACATTTGGATTTCTGAATTGAAAAATTGAAATATGGCCACAAATAAAGGAATTACGACCATAATTATCCATTAATTAATTACCCAATTAACCAAATAACCCACCATCAGACTATCCATTGAATAAATCACAAAAAACTGATGTTGAATATAAATTTTTCGATTTTTCACCCAAATTACATACAGTA</canonical>
            <polymorphic>CCAAAATGTGATTACTGTAGAGACTACAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGRTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGAATTAAAAACGTTGAAAACCAATGAGTCCACTGACCAGTCTGAAGGTGTGAATTTCCTCTAAATTTTTGAATTATCGAACATTTGGATTTCTGAATTGAAAAATTGAAATATGGCCACAAATAAAGGAATTACGACCATAATTATCCATTAATTAATTACCCAATTAACCAAATAACCCACCATCAGACTATCCATTGAATAAATCACAAAAAACTGATGTTGAATATAAATTTTTCGATTTTTCACCCAAATTACATACAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATGAATATGTCAAGGAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTAGAAATTCAAGAACAAACAAC</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>ATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAA</canonical_amplicon>
		<polymorphic_amplicon>ATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGRTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10026</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>72554</contig_pos>
        <strand>+</strand>
        <context>GRAGWARGAG[A/G]CCCTGAAACG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAG</left_flank>
        <right_flank>CCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGACATTTTCCAAAATGTGATTACTGTAGAGACTACAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGAATTAAAAACGTTGAAAACCAATGAGTCCACTGACCAGTCTGAAGGTGTGAATTTCCTCTAAATTTTTGAATTATCGAACATTTGGATTTCTGAATTGAAAAATTGAAATATGGCCACAAATAAAGGAATTACGACCATAATTATCCATTAATTAATTACCCAATTAACCAAATAACCCACCATCAGACTATCCATTGAATAAATC</canonical>
            <polymorphic>ATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGACATTTTCCAAAATGTGATTACTGTAGAGACTACAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGRCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGAATTAAAAACGTTGAAAACCAATGAGTCCACTGACCAGTCTGAAGGTGTGAATTTCCTCTAAATTTTTGAATTATCGAACATTTGGATTTCTGAATTGAAAAATTGAAATATGGCCACAAATAAAGGAATTACGACCATAATTATCCATTAATTAATTACCCAATTAACCAAATAACCCACCATCAGACTATCCATTGAATAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>408 301 199 92</canonical_bands>
                <polymorphic_bands>607 301 92</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>254 154 150 127 96 92 72 42 13</canonical_bands>
                <polymorphic_bands>254 226 150 127 96 92 42 13</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTGAAGACATTCGATTTAGG</pcr_primer_p1>
		<pcr_primer_p2>CAGAAATCTAGACAACGAATGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTG</canonical_amplicon>
		<polymorphic_amplicon>GACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGRCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10027</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>72550</contig_pos>
        <strand>+</strand>
        <context>AGAAGRAGWA[A/G]GAGRCCCTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAA</left_flank>
        <right_flank>GAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGACATTTTCCAAAATGTGATTACTGTAGAGACTACAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGAATTAAAAACGTTGAAAACCAATGAGTCCACTGACCAGTCTGAAGGTGTGAATTTCCTCTAAATTTTTGAATTATCGAACATTTGGATTTCTGAATTGAAAAATTGAAATATGGCCACAAATAAAGGAATTACGACCATAATTATCCATTAATTAATTACCCAATTAACCAAATAACCCACCATCAGACTATCCATTGAATA</canonical>
            <polymorphic>GCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGACATTTTCCAAAATGTGATTACTGTAGAGACTACAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAARGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGAATTAAAAACGTTGAAAACCAATGAGTCCACTGACCAGTCTGAAGGTGTGAATTTCCTCTAAATTTTTGAATTATCGAACATTTGGATTTCTGAATTGAAAAATTGAAATATGGCCACAAATAAAGGAATTACGACCATAATTATCCATTAATTAATTACCCAATTAACCAAATAACCCACCATCAGACTATCCATTGAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTGAAGACATTCGATTTAGG</pcr_primer_p1>
		<pcr_primer_p2>CAGAAATCTAGACAACGAATGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTG</canonical_amplicon>
		<polymorphic_amplicon>GACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAARGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10028</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>72548</contig_pos>
        <strand>+</strand>
        <context>GGAGAAGRAG[A/T]ARGAGRCCCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAG</left_flank>
        <right_flank>AAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGACATTTTCCAAAATGTGATTACTGTAGAGACTACAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGAATTAAAAACGTTGAAAACCAATGAGTCCACTGACCAGTCTGAAGGTGTGAATTTCCTCTAAATTTTTGAATTATCGAACATTTGGATTTCTGAATTGAAAAATTGAAATATGGCCACAAATAAAGGAATTACGACCATAATTATCCATTAATTAATTACCCAATTAACCAAATAACCCACCATCAGACTATCCATTGAA</canonical>
            <polymorphic>CGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGACATTTTCCAAAATGTGATTACTGTAGAGACTACAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGWAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGAATTAAAAACGTTGAAAACCAATGAGTCCACTGACCAGTCTGAAGGTGTGAATTTCCTCTAAATTTTTGAATTATCGAACATTTGGATTTCTGAATTGAAAAATTGAAATATGGCCACAAATAAAGGAATTACGACCATAATTATCCATTAATTAATTACCCAATTAACCAAATAACCCACCATCAGACTATCCATTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTGAAGACATTCGATTTAGG</pcr_primer_p1>
		<pcr_primer_p2>CAGAAATCTAGACAACGAATGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTG</canonical_amplicon>
		<polymorphic_amplicon>GACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGWAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10029</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>72545</contig_pos>
        <strand>+</strand>
        <context>CAAGGAGAAG[A/G]AGWARGAGRC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAG</left_flank>
        <right_flank>AGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGACATTTTCCAAAATGTGATTACTGTAGAGACTACAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGAATTAAAAACGTTGAAAACCAATGAGTCCACTGACCAGTCTGAAGGTGTGAATTTCCTCTAAATTTTTGAATTATCGAACATTTGGATTTCTGAATTGAAAAATTGAAATATGGCCACAAATAAAGGAATTACGACCATAATTATCCATTAATTAATTACCCAATTAACCAAATAACCCACCATCAGACTATCCATT</canonical>
            <polymorphic>TTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGACATTTTCCAAAATGTGATTACTGTAGAGACTACAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGRAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGAATTAAAAACGTTGAAAACCAATGAGTCCACTGACCAGTCTGAAGGTGTGAATTTCCTCTAAATTTTTGAATTATCGAACATTTGGATTTCTGAATTGAAAAATTGAAATATGGCCACAAATAAAGGAATTACGACCATAATTATCCATTAATTAATTACCCAATTAACCAAATAACCCACCATCAGACTATCCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTGAAGACATTCGATTTAGG</pcr_primer_p1>
		<pcr_primer_p2>CAGAAATCTAGACAACGAATGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTG</canonical_amplicon>
		<polymorphic_amplicon>GACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGRAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10030</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>72484</contig_pos>
        <strand>+</strand>
        <context>AATTTGGAGC[C/T]AGATTCACAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGC</left_flank>
        <right_flank>AGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAACGAATTCCAAGTTTTAAATGCTGCGAAAATCGCTGGAATCAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGACATTTTCCAAAATGTGATTACTGTAGAGACTACAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGAATTAAAAACGTTGAAAACCAATGAGTCCACTGACCAGTCTGAAGGTGTGAATTTCCTCTAAATTTTTGAATTATCGAACATTTGGATTTCTGAATTGAAAAATTGAAATATGGCCACAAATAAAGGAATTACGAC</canonical>
            <polymorphic>CAAAACGAATTCCAAGTTTTAAATGCTGCGAAAATCGCTGGAATCAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGACATTTTCCAAAATGTGATTACTGTAGAGACTACAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCYAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGAATTAAAAACGTTGAAAACCAATGAGTCCACTGACCAGTCTGAAGGTGTGAATTTCCTCTAAATTTTTGAATTATCGAACATTTGGATTTCTGAATTGAAAAATTGAAATATGGCCACAAATAAAGGAATTACGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>254 166 154 150 127 72 42 22 13</canonical_bands>
                <polymorphic_bands>254 199 166 154 150 42 22 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTGAAGACATTCGATTTAGG</pcr_primer_p1>
		<pcr_primer_p2>CAGAAATCTAGACAACGAATGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTG</canonical_amplicon>
		<polymorphic_amplicon>GACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCYAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10031</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>72470</contig_pos>
        <strand>+</strand>
        <context>GGTGGGACAG[A/G]AAGAATTTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAG</left_flank>
        <right_flank>AAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAATGTTTCGCCCAAAACGAATTCCAAGTTTTAAATGCTGCGAAAATCGCTGGAATCAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGACATTTTCCAAAATGTGATTACTGTAGAGACTACAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGAATTAAAAACGTTGAAAACCAATGAGTCCACTGACCAGTCTGAAGGTGTGAATTTCCTCTAAATTTTTGAATTATCGAACATTTGGATTTCTGAATTGAAAAATTGAAATATGGCCACAAAT</canonical>
            <polymorphic>TCCAATGTTTCGCCCAAAACGAATTCCAAGTTTTAAATGCTGCGAAAATCGCTGGAATCAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGACATTTTCCAAAATGTGATTACTGTAGAGACTACAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGRAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGAATTAAAAACGTTGAAAACCAATGAGTCCACTGACCAGTCTGAAGGTGTGAATTTCCTCTAAATTTTTGAATTATCGAACATTTGGATTTCTGAATTGAAAAATTGAAATATGGCCACAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTGAAGACATTCGATTTAGG</pcr_primer_p1>
		<pcr_primer_p2>CAGAAATCTAGACAACGAATGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTG</canonical_amplicon>
		<polymorphic_amplicon>GACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGRAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10032</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>72422</contig_pos>
        <strand>+</strand>
        <context>AACAATGRAG[A/G]TAATTAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAG</left_flank>
        <right_flank>TAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCCAACATTCAAAACATCCCATGCAAATGGTTGTAAAACATCAGACATCCAATGTTTCGCCCAAAACGAATTCCAAGTTTTAAATGCTGCGAAAATCGCTGGAATCAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGACATTTTCCAAAATGTGATTACTGTAGAGACTACAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGAATTAAAAACGTTGAAAACCAATGAGTCCACTGACCAGTCTGAAGGTGTGAATTTCCTCTAAATTTTTGAATTA</canonical>
            <polymorphic>ACCCAACATTCAAAACATCCCATGCAAATGGTTGTAAAACATCAGACATCCAATGTTTCGCCCAAAACGAATTCCAAGTTTTAAATGCTGCGAAAATCGCTGGAATCAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGACATTTTCCAAAATGTGATTACTGTAGAGACTACAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGRTAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGAATTAAAAACGTTGAAAACCAATGAGTCCACTGACCAGTCTGAAGGTGTGAATTTCCTCTAAATTTTTGAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCAGATAAATAAAAAGGGAGT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTCATCTATACCCCTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGRTAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10033</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>72419</contig_pos>
        <strand>+</strand>
        <context>GACAACAATG[A/G]AGRTAATTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATG</left_flank>
        <right_flank>AGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTACCCAACATTCAAAACATCCCATGCAAATGGTTGTAAAACATCAGACATCCAATGTTTCGCCCAAAACGAATTCCAAGTTTTAAATGCTGCGAAAATCGCTGGAATCAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGACATTTTCCAAAATGTGATTACTGTAGAGACTACAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGAATTAAAAACGTTGAAAACCAATGAGTCCACTGACCAGTCTGAAGGTGTGAATTTCCTCTAAATTTTTGAA</canonical>
            <polymorphic>CTTACCCAACATTCAAAACATCCCATGCAAATGGTTGTAAAACATCAGACATCCAATGTTTCGCCCAAAACGAATTCCAAGTTTTAAATGCTGCGAAAATCGCTGGAATCAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGACATTTTCCAAAATGTGATTACTGTAGAGACTACAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGRAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGAATTAAAAACGTTGAAAACCAATGAGTCCACTGACCAGTCTGAAGGTGTGAATTTCCTCTAAATTTTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCAGATAAATAAAAAGGGAGT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTCATCTATACCCCTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGRAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10034</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>72320</contig_pos>
        <strand>+</strand>
        <context>TAATAAATGR[C/T]AGATTTTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGA</left_flank>
        <right_flank>AGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGGCGATGACCTAGATTTTTTTAGGTCATGACCTAGATTTTTTCAGGTCATGAATTAGAATTTTTGAAGTTTAGAATTTTGAAATTACGAAAACTGCCTTACCCAACATTCAAAACATCCCATGCAAATGGTTGTAAAACATCAGACATCCAATGTTTCGCCCAAAACGAATTCCAAGTTTTAAATGCTGCGAAAATCGCTGGAATCAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGACATTTTCCAAAATGTGATTACTGTAGAGACTACAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAA</canonical>
            <polymorphic>TTAGGCGATGACCTAGATTTTTTTAGGTCATGACCTAGATTTTTTCAGGTCATGAATTAGAATTTTTGAAGTTTAGAATTTTGAAATTACGAAAACTGCCTTACCCAACATTCAAAACATCCCATGCAAATGGTTGTAAAACATCAGACATCCAATGTTTCGCCCAAAACGAATTCCAAGTTTTAAATGCTGCGAAAATCGCTGGAATCAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGACATTTTCCAAAATGTGATTACTGTAGAGACTACAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGAYAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGAAGAATCATCAAAAATAGAG</pcr_primer_p1>
		<pcr_primer_p2>CCATTAATTCAAATATTTCTGACC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGG</canonical_amplicon>
		<polymorphic_amplicon>TCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGAYAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10035</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>72319</contig_pos>
        <strand>+</strand>
        <context>ATAATAAATG[A/G]YAGATTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATG</left_flank>
        <right_flank>CAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAGGCGATGACCTAGATTTTTTTAGGTCATGACCTAGATTTTTTCAGGTCATGAATTAGAATTTTTGAAGTTTAGAATTTTGAAATTACGAAAACTGCCTTACCCAACATTCAAAACATCCCATGCAAATGGTTGTAAAACATCAGACATCCAATGTTTCGCCCAAAACGAATTCCAAGTTTTAAATGCTGCGAAAATCGCTGGAATCAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGACATTTTCCAAAATGTGATTACTGTAGAGACTACAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGA</canonical>
            <polymorphic>TTTAGGCGATGACCTAGATTTTTTTAGGTCATGACCTAGATTTTTTCAGGTCATGAATTAGAATTTTTGAAGTTTAGAATTTTGAAATTACGAAAACTGCCTTACCCAACATTCAAAACATCCCATGCAAATGGTTGTAAAACATCAGACATCCAATGTTTCGCCCAAAACGAATTCCAAGTTTTAAATGCTGCGAAAATCGCTGGAATCAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGACATTTTCCAAAATGTGATTACTGTAGAGACTACAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGRCAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGAAGAATCATCAAAAATAGAG</pcr_primer_p1>
		<pcr_primer_p2>CCATTAATTCAAATATTTCTGACC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGG</canonical_amplicon>
		<polymorphic_amplicon>TCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGRCAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10036</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>72296</contig_pos>
        <strand>+</strand>
        <context>AGGGAGTGAT[A/T]AGGATGAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGAT</left_flank>
        <right_flank>AGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCGTATTCTAAAATCTAGATTTTTTAGGCGATGACCTAGATTTTTTTAGGTCATGACCTAGATTTTTTCAGGTCATGAATTAGAATTTTTGAAGTTTAGAATTTTGAAATTACGAAAACTGCCTTACCCAACATTCAAAACATCCCATGCAAATGGTTGTAAAACATCAGACATCCAATGTTTCGCCCAAAACGAATTCCAAGTTTTAAATGCTGCGAAAATCGCTGGAATCAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGACATTTTCCAAAATGTGATTACTGTAGAGACTACAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATT</canonical>
            <polymorphic>TCCGTATTCTAAAATCTAGATTTTTTAGGCGATGACCTAGATTTTTTTAGGTCATGACCTAGATTTTTTCAGGTCATGAATTAGAATTTTTGAAGTTTAGAATTTTGAAATTACGAAAACTGCCTTACCCAACATTCAAAACATCCCATGCAAATGGTTGTAAAACATCAGACATCCAATGTTTCGCCCAAAACGAATTCCAAGTTTTAAATGCTGCGAAAATCGCTGGAATCAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGACATTTTCCAAAATGTGATTACTGTAGAGACTACAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATWAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGAAGAATCATCAAAAATAGAG</pcr_primer_p1>
		<pcr_primer_p2>CCATTAATTCAAATATTTCTGACC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGG</canonical_amplicon>
		<polymorphic_amplicon>TCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATWAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10037</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>72197</contig_pos>
        <strand>+</strand>
        <context>TTSCAGCCCA[C/T]GGAACTAGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCA</left_flank>
        <right_flank>GGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTAAAATTTTATAATTCTAAAATTCTAAAACTCTAAAATTCTAAAATCTATTCGATTGTAGAGCTTACAATAACCAAACTACAGTATCCAAAAAAAATCCGTATTCTAAAATCTAGATTTTTTAGGCGATGACCTAGATTTTTTTAGGTCATGACCTAGATTTTTTCAGGTCATGAATTAGAATTTTTGAAGTTTAGAATTTTGAAATTACGAAAACTGCCTTACCCAACATTCAAAACATCCCATGCAAATGGTTGTAAAACATCAGACATCCAATGTTTCGCCCAAAACGAATTCCAAGTTTTAAATGCTGCGAAAATCGCTGGAATCAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGACATTTTCCAAAATGTGATTACTGTAGAGACTACAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCG</canonical>
            <polymorphic>ATCTAAAATTTTATAATTCTAAAATTCTAAAACTCTAAAATTCTAAAATCTATTCGATTGTAGAGCTTACAATAACCAAACTACAGTATCCAAAAAAAATCCGTATTCTAAAATCTAGATTTTTTAGGCGATGACCTAGATTTTTTTAGGTCATGACCTAGATTTTTTCAGGTCATGAATTAGAATTTTTGAAGTTTAGAATTTTGAAATTACGAAAACTGCCTTACCCAACATTCAAAACATCCCATGCAAATGGTTGTAAAACATCAGACATCCAATGTTTCGCCCAAAACGAATTCCAAGTTTTAAATGCTGCGAAAATCGCTGGAATCAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGACATTTTCCAAAATGTGATTACTGTAGAGACTACAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCAYGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>356 170 162 97 74 58 38 28 11 6</canonical_bands>
                <polymorphic_bands>356 171 170 162 58 38 28 11 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCAAAATGTGATTACTGTAGAGA</pcr_primer_p1>
		<pcr_primer_p2>GATCATAACAAAATTTGGAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TCCAAAATGTGATTACTGTAGAGACTACAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATC</canonical_amplicon>
		<polymorphic_amplicon>TCCAAAATGTGATTACTGTAGAGACTACAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCAYGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10038</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>84079</contig_pos>
        <strand>+</strand>
        <context>ATCTCGATAG[A/G]CTGGCCTGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGGTGATAGAAAATGTGAAAACAAAGGAAATTATTTGAAATCTCGATAG</left_flank>
        <right_flank>CTGGCCTGGAAAACCCACTTCATTGCGAACAACTGTATCTCAAAAACTAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACACTTGGAATTCTAGAATTTTAGAATTTTAGAATCTTGGAATTTTAGAATTCTAGAATTTTAGAATTTTATAATTTTAGAATCTTGGAATCTTGGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATCTTGGAATTTTTTTTTAGAATTTTAGGAATTTTAGAATTTTAGAATTCTAGAATTCTAAAATTCCAGAATTTTAAAGTTTTAAAATTCTTGCTCTCTTACCCAATGTTGAGCAAATCAAAAGAGACACACTGTAACATATAGAAAGTCTCCGCCCACTCGTGATTTTCTCGAAACCATGCAAAATGAGCCTGAGCAATCATTGCGATCGCAAATCCTACAGTAATCCATGACGTCGCAATGCACAATTGTTTCTCTCCAGAAATCATCCGTTTTTTCAGTTTACACATTTTTGATAAAACGATTCCATTGGAAATTAGGGTGATAGAAAATGTGAAAACAAAGGAAATTATTTGAAATCTCGATAGACTGGCCTGGAAAACCCACTTCATTGCGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTACAAAAATATAGAGCATAAAATTTTGCACATTTTATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACGATCAAAGATACAACCGCTCAAAATTTTTAGAAAAGACGCAGAGAAAGCAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTTTGTTATAACTGATCACAAATCCTCCGAAAACATAATCCAGATATTTTTCGGAAATAATCACATTCCATATTAACAGAAACGGATATAAAGCTACGAAAATCACAACTTTTCTCATGTGCTTTGACCAAATCTGAAGTTTTCTGATTTTCTATTTTTCCAGCACATTTTCAGTGGTTTTGATGTTGTATTCGTTTTCTACGGCTCAAAATTAGTCTCGATTTTAATTTTCAGCCCTCTAGCTCGCA</canonical>
            <polymorphic>AGACACTTGGAATTCTAGAATTTTAGAATTTTAGAATCTTGGAATTTTAGAATTCTAGAATTTTAGAATTTTATAATTTTAGAATCTTGGAATCTTGGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATCTTGGAATTTTTTTTTAGAATTTTAGGAATTTTAGAATTTTAGAATTCTAGAATTCTAAAATTCCAGAATTTTAAAGTTTTAAAATTCTTGCTCTCTTACCCAATGTTGAGCAAATCAAAAGAGACACACTGTAACATATAGAAAGTCTCCGCCCACTCGTGATTTTCTCGAAACCATGCAAAATGAGCCTGAGCAATCATTGCGATCGCAAATCCTACAGTAATCCATGACGTCGCAATGCACAATTGTTTCTCTCCAGAAATCATCCGTTTTTTCAGTTTACACATTTTTGATAAAACGATTCCATTGGAAATTAGGGTGATAGAAAATGTGAAAACAAAGGAAATTATTTGAAATCTCGATAGRCTGGCCTGGAAAACCCACTTCATTGCGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTACAAAAATATAGAGCATAAAATTTTGCACATTTTATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACGATCAAAGATACAACCGCTCAAAATTTTTAGAAAAGACGCAGAGAAAGCAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTTTGTTATAACTGATCACAAATCCTCCGAAAACATAATCCAGATATTTTTCGGAAATAATCACATTCCATATTAACAGAAACGGATATAAAGCTACGAAAATCACAACTTTTCTCATGTGCTTTGACCAAATCTGAAGTTTTCTGATTTTCTATTTTTCCAGCACATTTTCAGTGGTTTTGATGTTGTATTCGTTTTCTACGGCTCAAAATTAGTCTCGATTTTAATTTTCAGCCCTCTAGCTCGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGGGTGATAGAAAATGTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TCAGTTATAACAAAAGAGTGATATGG</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>TTAGGGTGATAGAAAATGTGAAAACAAAGGAAATTATTTGAAATCTCGATAGACTGGCCTGGAAAACCCACTTCATTGCGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTACAAAAATATAGAGCATAAAATTTTGCACATTTTATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACGATCAAAGATACAACCGCTCAAAATTTTTAGAAAAGACGCAGAGAAAGCAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTTTGTTATAACTGA</canonical_amplicon>
		<polymorphic_amplicon>TTAGGGTGATAGAAAATGTGAAAACAAAGGAAATTATTTGAAATCTCGATAGRCTGGCCTGGAAAACCCACTTCATTGCGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTACAAAAATATAGAGCATAAAATTTTGCACATTTTATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACGATCAAAGATACAACCGCTCAAAATTTTTAGAAAAGACGCAGAGAAAGCAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTTTGTTATAACTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10039</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>84104</contig_pos>
        <strand>+</strand>
        <context>CCACTTCATT[G/T]YGAACAACTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGGAAATTATTTGAAATCTCGATAGACTGGCCTGGAAAACCCACTTCATT</left_flank>
        <right_flank>CGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTTTAGAATCTTGGAATTTTAGAATTCTAGAATTTTAGAATTTTATAATTTTAGAATCTTGGAATCTTGGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATCTTGGAATTTTTTTTTAGAATTTTAGGAATTTTAGAATTTTAGAATTCTAGAATTCTAAAATTCCAGAATTTTAAAGTTTTAAAATTCTTGCTCTCTTACCCAATGTTGAGCAAATCAAAAGAGACACACTGTAACATATAGAAAGTCTCCGCCCACTCGTGATTTTCTCGAAACCATGCAAAATGAGCCTGAGCAATCATTGCGATCGCAAATCCTACAGTAATCCATGACGTCGCAATGCACAATTGTTTCTCTCCAGAAATCATCCGTTTTTTCAGTTTACACATTTTTGATAAAACGATTCCATTGGAAATTAGGGTGATAGAAAATGTGAAAACAAAGGAAATTATTTGAAATCTCGATAGACTGGCCTGGAAAACCCACTTCATTGCGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTACAAAAATATAGAGCATAAAATTTTGCACATTTTATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACGATCAAAGATACAACCGCTCAAAATTTTTAGAAAAGACGCAGAGAAAGCAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTTTGTTATAACTGATCACAAATCCTCCGAAAACATAATCCAGATATTTTTCGGAAATAATCACATTCCATATTAACAGAAACGGATATAAAGCTACGAAAATCACAACTTTTCTCATGTGCTTTGACCAAATCTGAAGTTTTCTGATTTTCTATTTTTCCAGCACATTTTCAGTGGTTTTGATGTTGTATTCGTTTTCTACGGCTCAAAATTAGTCTCGATTTTAATTTTCAGCCCTCTAGCTCGCAATCGGTGTTTGCGTACTTTCGAAGC</canonical>
            <polymorphic>GAATTTTAGAATCTTGGAATTTTAGAATTCTAGAATTTTAGAATTTTATAATTTTAGAATCTTGGAATCTTGGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATCTTGGAATTTTTTTTTAGAATTTTAGGAATTTTAGAATTTTAGAATTCTAGAATTCTAAAATTCCAGAATTTTAAAGTTTTAAAATTCTTGCTCTCTTACCCAATGTTGAGCAAATCAAAAGAGACACACTGTAACATATAGAAAGTCTCCGCCCACTCGTGATTTTCTCGAAACCATGCAAAATGAGCCTGAGCAATCATTGCGATCGCAAATCCTACAGTAATCCATGACGTCGCAATGCACAATTGTTTCTCTCCAGAAATCATCCGTTTTTTCAGTTTACACATTTTTGATAAAACGATTCCATTGGAAATTAGGGTGATAGAAAATGTGAAAACAAAGGAAATTATTTGAAATCTCGATAGACTGGCCTGGAAAACCCACTTCATTKCGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTACAAAAATATAGAGCATAAAATTTTGCACATTTTATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACGATCAAAGATACAACCGCTCAAAATTTTTAGAAAAGACGCAGAGAAAGCAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTTTGTTATAACTGATCACAAATCCTCCGAAAACATAATCCAGATATTTTTCGGAAATAATCACATTCCATATTAACAGAAACGGATATAAAGCTACGAAAATCACAACTTTTCTCATGTGCTTTGACCAAATCTGAAGTTTTCTGATTTTCTATTTTTCCAGCACATTTTCAGTGGTTTTGATGTTGTATTCGTTTTCTACGGCTCAAAATTAGTCTCGATTTTAATTTTCAGCCCTCTAGCTCGCAATCGGTGTTTGCGTACTTTCGAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAAAGGAAATTATTTGAAATCT</pcr_primer_p1>
		<pcr_primer_p2>TCAGTTATAACAAAAGAGTGATATGG</pcr_primer_p2>
		<pcr_amplicon_size>298</pcr_amplicon_size>
		<canonical_amplicon>AACAAAGGAAATTATTTGAAATCTCGATAGACTGGCCTGGAAAACCCACTTCATTGCGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTACAAAAATATAGAGCATAAAATTTTGCACATTTTATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACGATCAAAGATACAACCGCTCAAAATTTTTAGAAAAGACGCAGAGAAAGCAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTTTGTTATAACTGA</canonical_amplicon>
		<polymorphic_amplicon>AACAAAGGAAATTATTTGAAATCTCGATAGACTGGCCTGGAAAACCCACTTCATTKCGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTACAAAAATATAGAGCATAAAATTTTGCACATTTTATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACGATCAAAGATACAACCGCTCAAAATTTTTAGAAAAGACGCAGAGAAAGCAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTTTGTTATAACTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10040</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>84105</contig_pos>
        <strand>+</strand>
        <context>CACTTCATTK[C/T]GAACAACTGt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAAATTATTTGAAATCTCGATAGACTGGCCTGGAAAACCCACTTCATTG</left_flank>
        <right_flank>GAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTAGAATCTTGGAATTTTAGAATTCTAGAATTTTAGAATTTTATAATTTTAGAATCTTGGAATCTTGGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATCTTGGAATTTTTTTTTAGAATTTTAGGAATTTTAGAATTTTAGAATTCTAGAATTCTAAAATTCCAGAATTTTAAAGTTTTAAAATTCTTGCTCTCTTACCCAATGTTGAGCAAATCAAAAGAGACACACTGTAACATATAGAAAGTCTCCGCCCACTCGTGATTTTCTCGAAACCATGCAAAATGAGCCTGAGCAATCATTGCGATCGCAAATCCTACAGTAATCCATGACGTCGCAATGCACAATTGTTTCTCTCCAGAAATCATCCGTTTTTTCAGTTTACACATTTTTGATAAAACGATTCCATTGGAAATTAGGGTGATAGAAAATGTGAAAACAAAGGAAATTATTTGAAATCTCGATAGACTGGCCTGGAAAACCCACTTCATTGCGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTACAAAAATATAGAGCATAAAATTTTGCACATTTTATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACGATCAAAGATACAACCGCTCAAAATTTTTAGAAAAGACGCAGAGAAAGCAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTTTGTTATAACTGATCACAAATCCTCCGAAAACATAATCCAGATATTTTTCGGAAATAATCACATTCCATATTAACAGAAACGGATATAAAGCTACGAAAATCACAACTTTTCTCATGTGCTTTGACCAAATCTGAAGTTTTCTGATTTTCTATTTTTCCAGCACATTTTCAGTGGTTTTGATGTTGTATTCGTTTTCTACGGCTCAAAATTAGTCTCGATTTTAATTTTCAGCCCTCTAGCTCGCAATCGGTGTTTGCGTACTTTCGAAGCT</canonical>
            <polymorphic>AATTTTAGAATCTTGGAATTTTAGAATTCTAGAATTTTAGAATTTTATAATTTTAGAATCTTGGAATCTTGGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATCTTGGAATTTTTTTTTAGAATTTTAGGAATTTTAGAATTTTAGAATTCTAGAATTCTAAAATTCCAGAATTTTAAAGTTTTAAAATTCTTGCTCTCTTACCCAATGTTGAGCAAATCAAAAGAGACACACTGTAACATATAGAAAGTCTCCGCCCACTCGTGATTTTCTCGAAACCATGCAAAATGAGCCTGAGCAATCATTGCGATCGCAAATCCTACAGTAATCCATGACGTCGCAATGCACAATTGTTTCTCTCCAGAAATCATCCGTTTTTTCAGTTTACACATTTTTGATAAAACGATTCCATTGGAAATTAGGGTGATAGAAAATGTGAAAACAAAGGAAATTATTTGAAATCTCGATAGACTGGCCTGGAAAACCCACTTCATTGYGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTACAAAAATATAGAGCATAAAATTTTGCACATTTTATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACGATCAAAGATACAACCGCTCAAAATTTTTAGAAAAGACGCAGAGAAAGCAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTTTGTTATAACTGATCACAAATCCTCCGAAAACATAATCCAGATATTTTTCGGAAATAATCACATTCCATATTAACAGAAACGGATATAAAGCTACGAAAATCACAACTTTTCTCATGTGCTTTGACCAAATCTGAAGTTTTCTGATTTTCTATTTTTCCAGCACATTTTCAGTGGTTTTGATGTTGTATTCGTTTTCTACGGCTCAAAATTAGTCTCGATTTTAATTTTCAGCCCTCTAGCTCGCAATCGGTGTTTGCGTACTTTCGAAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAAAGGAAATTATTTGAAATCT</pcr_primer_p1>
		<pcr_primer_p2>TCAGTTATAACAAAAGAGTGATATGG</pcr_primer_p2>
		<pcr_amplicon_size>298</pcr_amplicon_size>
		<canonical_amplicon>AACAAAGGAAATTATTTGAAATCTCGATAGACTGGCCTGGAAAACCCACTTCATTGCGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTACAAAAATATAGAGCATAAAATTTTGCACATTTTATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACGATCAAAGATACAACCGCTCAAAATTTTTAGAAAAGACGCAGAGAAAGCAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTTTGTTATAACTGA</canonical_amplicon>
		<polymorphic_amplicon>AACAAAGGAAATTATTTGAAATCTCGATAGACTGGCCTGGAAAACCCACTTCATTGYGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTACAAAAATATAGAGCATAAAATTTTGCACATTTTATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACGATCAAAGATACAACCGCTCAAAATTTTTAGAAAAGACGCAGAGAAAGCAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTTTGTTATAACTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10041</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>86038</contig_pos>
        <strand>+</strand>
        <context>CGAGATACAG[C/T]TCTTGATTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGCTTTAGTGATAAAAATATTTGAGAACAGACAAAGATCGAGATACAG</left_flank>
        <right_flank>TCTTGATTATTTTTGGGTAACTGTAATTTCCACTTTTTCAGGATTACTAT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATGAATTTTTCGAAAAAACATGATTTTGAGTTCCCAACAAAACAATCAATATTCTTAACTGAAATATCACTCCAGGACCCAAATATGCAAATTGAACGAAAAATTTCAAATTTTCAGTAAAAACTGAATATGACGAATTGCAATTGCTCATATTTTTCGAAGAAATACAAAAAATCAAATTATATGTTTTGTTGTAAAAAAGGAAATTATTTTGATAAGATTATTCAGGCAGAAAAATAAACATCTGATTTTTTTCGGAATCTTAGAATTTTGAGATGAAACGTGCAAAAAATTAGAAAATCAATGATCTGGAAACTTTTGAACTCAAAAGCTAATTTTTTTTTTTGAAAAAAACTGGAAATATACATTTTTATCAGAATTATCAGAAAGAAATGACGAGTTAGAGAGCTGAAACTCGAAATCTGGAGTAATTTGAGTATGAGAAACTCAGCTTTAGTGATAAAAATATTTGAGAACAGACAAAGATCGAGATACAGCTCTTGATTATTTTTGGGTAACTGTAATTTCCACTTTTTCAGGATTACTATAAGTTCAAGTTTGAGAACCAACAAAAAATTTGAAATAGCTGTAAAATTCAATGCTTGACACAAGAAACTAGAACTTTCTTTCTCGATTTCTAAGATTTTTGAGTTTTTTCAGGTTACTGTACTTTCAAAAGTACGCAAACACCGATTGTGAGCTAGAGGGCTGAAAATCGGAGTCTAGACTAAATTGAGTATGGGTAACTCGATTTTAACAATAAAAATGCTCAAAAATGAACTAGAATCGGGATGCTGTATTTAATTATTCTCGGATTACTGTAGCTTGCTTTCCGGTTCATTTTCAAACACTTGATCAGCGAATTTGAGTTCCCCACCCTCAAATTAAAAACTCCAATTTTCGGCCCTGTAGCTCGCCACCGCTGTTTGCGTAATTTCGAAGCTAAGGTAATCTGGAGAATCTATAATAATAATATTGTATCTCTCTGATGTTCTGAT</canonical>
            <polymorphic>AAATGAATTTTTCGAAAAAACATGATTTTGAGTTCCCAACAAAACAATCAATATTCTTAACTGAAATATCACTCCAGGACCCAAATATGCAAATTGAACGAAAAATTTCAAATTTTCAGTAAAAACTGAATATGACGAATTGCAATTGCTCATATTTTTCGAAGAAATACAAAAAATCAAATTATATGTTTTGTTGTAAAAAAGGAAATTATTTTGATAAGATTATTCAGGCAGAAAAATAAACATCTGATTTTTTTCGGAATCTTAGAATTTTGAGATGAAACGTGCAAAAAATTAGAAAATCAATGATCTGGAAACTTTTGAACTCAAAAGCTAATTTTTTTTTTTGAAAAAAACTGGAAATATACATTTTTATCAGAATTATCAGAAAGAAATGACGAGTTAGAGAGCTGAAACTCGAAATCTGGAGTAATTTGAGTATGAGAAACTCAGCTTTAGTGATAAAAATATTTGAGAACAGACAAAGATCGAGATACAGYTCTTGATTATTTTTGGGTAACTGTAATTTCCACTTTTTCAGGATTACTATAAGTTCAAGTTTGAGAACCAACAAAAAATTTGAAATAGCTGTAAAATTCAATGCTTGACACAAGAAACTAGAACTTTCTTTCTCGATTTCTAAGATTTTTGAGTTTTTTCAGGTTACTGTACTTTCAAAAGTACGCAAACACCGATTGTGAGCTAGAGGGCTGAAAATCGGAGTCTAGACTAAATTGAGTATGGGTAACTCGATTTTAACAATAAAAATGCTCAAAAATGAACTAGAATCGGGATGCTGTATTTAATTATTCTCGGATTACTGTAGCTTGCTTTCCGGTTCATTTTCAAACACTTGATCAGCGAATTTGAGTTCCCCACCCTCAAATTAAAAACTCCAATTTTCGGCCCTGTAGCTCGCCACCGCTGTTTGCGTAATTTCGAAGCTAAGGTAATCTGGAGAATCTATAATAATAATATTGTATCTCTCTGATGTTCTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>333 124 114 89 88 77 56 46 43 30</canonical_bands>
                <polymorphic_bands>333 135 124 114 88 77 56 43 30</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>333 116 114 89 80 77 56 46 43 30 8 8</canonical_bands>
                <polymorphic_bands>333 135 116 114 80 77 56 43 30 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATCTGGAAACTTTTGAACTC</pcr_primer_p1>
		<pcr_primer_p2>TGAACTTATAGTAATCCTGAAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGATCTGGAAACTTTTGAACTCAAAAGCTAATTTTTTTTTTTGAAAAAAACTGGAAATATACATTTTTATCAGAATTATCAGAAAGAAATGACGAGTTAGAGAGCTGAAACTCGAAATCTGGAGTAATTTGAGTATGAGAAACTCAGCTTTAGTGATAAAAATATTTGAGAACAGACAAAGATCGAGATACAGCTCTTGATTATTTTTGGGTAACTGTAATTTCCACTTTTTCAGGATTACTATAAGTTCA</canonical_amplicon>
		<polymorphic_amplicon>TGATCTGGAAACTTTTGAACTCAAAAGCTAATTTTTTTTTTTGAAAAAAACTGGAAATATACATTTTTATCAGAATTATCAGAAAGAAATGACGAGTTAGAGAGCTGAAACTCGAAATCTGGAGTAATTTGAGTATGAGAAACTCAGCTTTAGTGATAAAAATATTTGAGAACAGACAAAGATCGAGATACAGYTCTTGATTATTTTTGGGTAACTGTAATTTCCACTTTTTCAGGATTACTATAAGTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10042</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>85958</contig_pos>
        <strand></strand>
        <context>gctgaaactc[G/A]aaatctggag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTTATCAGAATTATCAGAAAGAAATGACGAGTTAGAGAGCTGAAACTC</left_flank>
        <right_flank>AAATCTGGAGTAATTTGAGTATGAGAAACTCAGCTTTAGTGATAAAAATA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTTAAGTTTTATATTTGTTTCCAGTCTACAGTAATCCAAAAGCATACCACCACCGAGTCCAATGACCAAATCATGAAAAATGAATTTTTCGAAAAAACATGATTTTGAGTTCCCAACAAAACAATCAATATTCTTAACTGAAATATCACTCCAGGACCCAAATATGCAAATTGAACGAAAAATTTCAAATTTTCAGTAAAAACTGAATATGACGAATTGCAATTGCTCATATTTTTCGAAGAAATACAAAAAATCAAATTATATGTTTTGTTGTAAAAAAGGAAATTATTTTGATAAGATTATTCAGGCAGAAAAATAAACATCTGATTTTTTTCGGAATCTTAGAATTTTGAGATGAAACGTGCAAAAAATTAGAAAATCAATGATCTGGAAACTTTTGAACTCAAAAGCTAATTTTTTTTTTTGAAAAAAACTGGAAATATACATTTTTATCAGAATTATCAGAAAGAAATGACGAGTTAGAGAGCTGAAACTCGAAATCTGGAGTAATTTGAGTATGAGAAACTCAGCTTTAGTGATAAAAATATTTGAGAACAGACAAAGATCGAGATACAGCTCTTGATTATTTTTGGGTAACTGTAATTTCCACTTTTTCAGGATTACTATAAGTTCAAGTTTGAGAACCAACAAAAAATTTGAAATAGCTGTAAAATTCAATGCTTGACACAAGAAACTAGAACTTTCTTTCTCGATTTCTAAGATTTTTGAGTTTTTTCAGGTTACTGTACTTTCAAAAGTACGCAAACACCGATTGTGAGCTAGAGGGCTGAAAATCGGAGTCTAGACTAAATTGAGTATGGGTAACTCGATTTTAACAATAAAAATGCTCAAAAATGAACTAGAATCGGGATGCTGTATTTAATTATTCTCGGATTACTGTAGCTTGCTTTCCGGTTCATTTTCAAACACTTGATCAGCGAATTTGAGTTCCCCACCCTCAAATTAAAAACTCCAATTTTCGGCCCTGTAGCTCGCC</canonical>
            <polymorphic>GATTTTAAGTTTTATATTTGTTTCCAGTCTACAGTAATCCAAAAGCATACCACCACCGAGTCCAATGACCAAATCATGAAAAATGAATTTTTCGAAAAAACATGATTTTGAGTTCCCAACAAAACAATCAATATTCTTAACTGAAATATCACTCCAGGACCCAAATATGCAAATTGAACGAAAAATTTCAAATTTTCAGTAAAAACTGAATATGACGAATTGCAATTGCTCATATTTTTCGAAGAAATACAAAAAATCAAATTATATGTTTTGTTGTAAAAAAGGAAATTATTTTGATAAGATTATTCAGGCAGAAAAATAAACATCTGATTTTTTTCGGAATCTTAGAATTTTGAGATGAAACGTGCAAAAAATTAGAAAATCAATGATCTGGAAACTTTTGAACTCAAAAGCTAATTTTTTTTTTTGAAAAAAACTGGAAATATACATTTTTATCAGAATTATCAGAAAGAAATGACGAGTTAGAGAGCTGAAACTCRAAATCTGGAGTAATTTGAGTATGAGAAACTCAGCTTTAGTGATAAAAATATTTGAGAACAGACAAAGATCGAGATACAGCTCTTGATTATTTTTGGGTAACTGTAATTTCCACTTTTTCAGGATTACTATAAGTTCAAGTTTGAGAACCAACAAAAAATTTGAAATAGCTGTAAAATTCAATGCTTGACACAAGAAACTAGAACTTTCTTTCTCGATTTCTAAGATTTTTGAGTTTTTTCAGGTTACTGTACTTTCAAAAGTACGCAAACACCGATTGTGAGCTAGAGGGCTGAAAATCGGAGTCTAGACTAAATTGAGTATGGGTAACTCGATTTTAACAATAAAAATGCTCAAAAATGAACTAGAATCGGGATGCTGTATTTAATTATTCTCGGATTACTGTAGCTTGCTTTCCGGTTCATTTTCAAACACTTGATCAGCGAATTTGAGTTCCCCACCCTCAAATTAAAAACTCCAATTTTCGGCCCTGTAGCTCGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>259 169 147 144 117 93 71</canonical_bands>
                <polymorphic_bands>330 169 147 144 117 93</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGAAAATCAATGATCTGGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TAATCCTGAAAAAGTGGAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAGAAAATCAATGATCTGGAAACTTTTGAACTCAAAAGCTAATTTTTTTTTTTGAAAAAAACTGGAAATATACATTTTTATCAGAATTATCAGAAAGAAATGACGAGTTAGAGAGCTGAAACTCGAAATCTGGAGTAATTTGAGTATGAGAAACTCAGCTTTAGTGATAAAAATATTTGAGAACAGACAAAGATCGAGATACAGCTCTTGATTATTTTTGGGTAACTGTAATTTCCACTTTTTCAGGATTA</canonical_amplicon>
		<polymorphic_amplicon>TAGAAAATCAATGATCTGGAAACTTTTGAACTCAAAAGCTAATTTTTTTTTTTGAAAAAAACTGGAAATATACATTTTTATCAGAATTATCAGAAAGAAATGACGAGTTAGAGAGCTGAAACTCRAAATCTGGAGTAATTTGAGTATGAGAAACTCAGCTTTAGTGATAAAAATATTTGAGAACAGACAAAGATCGAGATACAGCTCTTGATTATTTTTGGGTAACTGTAATTTCCACTTTTTCAGGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10043</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>109519</contig_pos>
        <strand>+</strand>
        <context>AGTTTTAGCT[A/G]ATTWATGGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTCTTTTCTTTGACCCTTATCATTTTTCATTCGGTTCACAGTTTTAGCT</left_flank>
        <right_flank>ATTAATGGTTTGTCCTACAAACATTTCAAGAAAGCCAAAAATTCAGAAAA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTTCATAAATAAAAAAAAAAGGAATTCTGAGGTTTTTATATTCTTGGAAGTTTCAAAATTCTCAAATTTTTAGACTTGGAAGTTCAAAAACTAAAAATTTTGAATTCTGAAAATCTGGAACTTCAGGATTCTGAGTATCTGGAAATTCTAAAATTCTGAAATTCTGAAATGATGGAATTTCCAAACTAAAAAGATTTCACAATTCCCTGAAGAGAGCGAAAAGTCTCATCTTTTTTTCAATTGTTTTGCTCCATTTCCCCCTTATCATTGATAAATTGATAAAATTTGAAAAATTCTGACTCATCAATTTTTCCCTATTTTTTCTAATTCTCTCTGTTCTCTCTTAACGATCAATTTGTCCTTCTTTTTTTCGCTTTTTTCATTTTCTCAAAAGCCTTTCGTACTCCCTTTTTTCCTTGTTCTTTATGACCCATTCTCTTTTTTCTTCTTCTTTTCTTTGACCCTTATCATTTTTCATTCGGTTCACAGTTTTAGCTGATTAATGGTTTGTCCTACAAACATTTCAAGAAAGCCAAAAATTCAGAAAATATAGAAATTCAGAAGTTCCGAATTTTTGAAATTCAGAATCTCAAATATCTGAATTTCAGTAATTTGGAGTTCCAAAATACTTCTGAAAAGTCTAAGAAATCTAGAAATTTCAAAATTTCAAAACATTATTATATTTTTTTTGAAATTTTTCAAAAAACGGAGCTTCCGGTGGTGTAAAAATAGGATTTTTATCATTGTTTCTTATCTAGTCTTCTACCTTTTTTCCCCCATTAAATCGAGAATAAATAAACAGAGAAAATGAGAGAAAGAAGAAGAAAAAAATGCATAAATATAAATCATCTGGTTTATGTGACTAATTTATTGGCTTCTTTCGTTTTTCTTCAGATTTTCGGATTTTCGGATATTTAGAAATTTATAACATGAATATATGAGAAACCCGGTAATAATCTGAAGATTCAATGAATCTGAACTGTGATTATATTTTAAAT</canonical>
            <polymorphic>ATGTTCATAAATAAAAAAAAAAGGAATTCTGAGGTTTTTATATTCTTGGAAGTTTCAAAATTCTCAAATTTTTAGACTTGGAAGTTCAAAAACTAAAAATTTTGAATTCTGAAAATCTGGAACTTCAGGATTCTGAGTATCTGGAAATTCTAAAATTCTGAAATTCTGAAATGATGGAATTTCCAAACTAAAAAGATTTCACAATTCCCTGAAGAGAGCGAAAAGTCTCATCTTTTTTTCAATTGTTTTGCTCCATTTCCCCCTTATCATTGATAAATTGATAAAATTTGAAAAATTCTGACTCATCAATTTTTCCCTATTTTTTCTAATTCTCTCTGTTCTCTCTTAACGATCAATTTGTCCTTCTTTTTTTCGCTTTTTTCATTTTCTCAAAAGCCTTTCGTACTCCCTTTTTTCCTTGTTCTTTATGACCCATTCTCTTTTTTCTTCTTCTTTTCTTTGACCCTTATCATTTTTCATTCGGTTCACAGTTTTAGCTRATTAATGGTTTGTCCTACAAACATTTCAAGAAAGCCAAAAATTCAGAAAATATAGAAATTCAGAAGTTCCGAATTTTTGAAATTCAGAATCTCAAATATCTGAATTTCAGTAATTTGGAGTTCCAAAATACTTCTGAAAAGTCTAAGAAATCTAGAAATTTCAAAATTTCAAAACATTATTATATTTTTTTTGAAATTTTTCAAAAAACGGAGCTTCCGGTGGTGTAAAAATAGGATTTTTATCATTGTTTCTTATCTAGTCTTCTACCTTTTTTCCCCCATTAAATCGAGAATAAATAAACAGAGAAAATGAGAGAAAGAAGAAGAAAAAAATGCATAAATATAAATCATCTGGTTTATGTGACTAATTTATTGGCTTCTTTCGTTTTTCTTCAGATTTTCGGATTTTCGGATATTTAGAAATTTATAACATGAATATATGAGAAACCCGGTAATAATCTGAAGATTCAATGAATCTGAACTGTGATTATATTTTAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAAAAATTCTGACTCATCAA</pcr_primer_p1>
		<pcr_primer_p2>TGGAACTCCAAATTACTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>338</pcr_amplicon_size>
		<canonical_amplicon>TTGAAAAATTCTGACTCATCAATTTTTCCCTATTTTTTCTAATTCTCTCTGTTCTCTCTTAACGATCAATTTGTCCTTCTTTTTTTCGCTTTTTTCATTTTCTCAAAAGCCTTTCGTACTCCCTTTTTTCCTTGTTCTTTATGACCCATTCTCTTTTTTCTTCTTCTTTTCTTTGACCCTTATCATTTTTCATTCGGTTCACAGTTTTAGCTGATTAATGGTTTGTCCTACAAACATTTCAAGAAAGCCAAAAATTCAGAAAATATAGAAATTCAGAAGTTCCGAATTTTTGAAATTCAGAATCTCAAATATCTGAATTTCAGTAATTTGGAGTTCCA</canonical_amplicon>
		<polymorphic_amplicon>TTGAAAAATTCTGACTCATCAATTTTTCCCTATTTTTTCTAATTCTCTCTGTTCTCTCTTAACGATCAATTTGTCCTTCTTTTTTTCGCTTTTTTCATTTTCTCAAAAGCCTTTCGTACTCCCTTTTTTCCTTGTTCTTTATGACCCATTCTCTTTTTTCTTCTTCTTTTCTTTGACCCTTATCATTTTTCATTCGGTTCACAGTTTTAGCTRATTAATGGTTTGTCCTACAAACATTTCAAGAAAGCCAAAAATTCAGAAAATATAGAAATTCAGAAGTTCCGAATTTTTGAAATTCAGAATCTCAAATATCTGAATTTCAGTAATTTGGAGTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10044</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>109523</contig_pos>
        <strand>+</strand>
        <context>TTAGCTRATT[A/T]ATGGTTTGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTCTTTGACCCTTATCATTTTTCATTCGGTTCACAGTTTTAGCTGATT</left_flank>
        <right_flank>ATGGTTTGTCCTACAAACATTTCAAGAAAGCCAAAAATTCAGAAAATATA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATAAATAAAAAAAAAAGGAATTCTGAGGTTTTTATATTCTTGGAAGTTTCAAAATTCTCAAATTTTTAGACTTGGAAGTTCAAAAACTAAAAATTTTGAATTCTGAAAATCTGGAACTTCAGGATTCTGAGTATCTGGAAATTCTAAAATTCTGAAATTCTGAAATGATGGAATTTCCAAACTAAAAAGATTTCACAATTCCCTGAAGAGAGCGAAAAGTCTCATCTTTTTTTCAATTGTTTTGCTCCATTTCCCCCTTATCATTGATAAATTGATAAAATTTGAAAAATTCTGACTCATCAATTTTTCCCTATTTTTTCTAATTCTCTCTGTTCTCTCTTAACGATCAATTTGTCCTTCTTTTTTTCGCTTTTTTCATTTTCTCAAAAGCCTTTCGTACTCCCTTTTTTCCTTGTTCTTTATGACCCATTCTCTTTTTTCTTCTTCTTTTCTTTGACCCTTATCATTTTTCATTCGGTTCACAGTTTTAGCTGATTAATGGTTTGTCCTACAAACATTTCAAGAAAGCCAAAAATTCAGAAAATATAGAAATTCAGAAGTTCCGAATTTTTGAAATTCAGAATCTCAAATATCTGAATTTCAGTAATTTGGAGTTCCAAAATACTTCTGAAAAGTCTAAGAAATCTAGAAATTTCAAAATTTCAAAACATTATTATATTTTTTTTGAAATTTTTCAAAAAACGGAGCTTCCGGTGGTGTAAAAATAGGATTTTTATCATTGTTTCTTATCTAGTCTTCTACCTTTTTTCCCCCATTAAATCGAGAATAAATAAACAGAGAAAATGAGAGAAAGAAGAAGAAAAAAATGCATAAATATAAATCATCTGGTTTATGTGACTAATTTATTGGCTTCTTTCGTTTTTCTTCAGATTTTCGGATTTTCGGATATTTAGAAATTTATAACATGAATATATGAGAAACCCGGTAATAATCTGAAGATTCAATGAATCTGAACTGTGATTATATTTTAAATCTTT</canonical>
            <polymorphic>TCATAAATAAAAAAAAAAGGAATTCTGAGGTTTTTATATTCTTGGAAGTTTCAAAATTCTCAAATTTTTAGACTTGGAAGTTCAAAAACTAAAAATTTTGAATTCTGAAAATCTGGAACTTCAGGATTCTGAGTATCTGGAAATTCTAAAATTCTGAAATTCTGAAATGATGGAATTTCCAAACTAAAAAGATTTCACAATTCCCTGAAGAGAGCGAAAAGTCTCATCTTTTTTTCAATTGTTTTGCTCCATTTCCCCCTTATCATTGATAAATTGATAAAATTTGAAAAATTCTGACTCATCAATTTTTCCCTATTTTTTCTAATTCTCTCTGTTCTCTCTTAACGATCAATTTGTCCTTCTTTTTTTCGCTTTTTTCATTTTCTCAAAAGCCTTTCGTACTCCCTTTTTTCCTTGTTCTTTATGACCCATTCTCTTTTTTCTTCTTCTTTTCTTTGACCCTTATCATTTTTCATTCGGTTCACAGTTTTAGCTGATTWATGGTTTGTCCTACAAACATTTCAAGAAAGCCAAAAATTCAGAAAATATAGAAATTCAGAAGTTCCGAATTTTTGAAATTCAGAATCTCAAATATCTGAATTTCAGTAATTTGGAGTTCCAAAATACTTCTGAAAAGTCTAAGAAATCTAGAAATTTCAAAATTTCAAAACATTATTATATTTTTTTTGAAATTTTTCAAAAAACGGAGCTTCCGGTGGTGTAAAAATAGGATTTTTATCATTGTTTCTTATCTAGTCTTCTACCTTTTTTCCCCCATTAAATCGAGAATAAATAAACAGAGAAAATGAGAGAAAGAAGAAGAAAAAAATGCATAAATATAAATCATCTGGTTTATGTGACTAATTTATTGGCTTCTTTCGTTTTTCTTCAGATTTTCGGATTTTCGGATATTTAGAAATTTATAACATGAATATATGAGAAACCCGGTAATAATCTGAAGATTCAATGAATCTGAACTGTGATTATATTTTAAATCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>342 280 213 156 9</canonical_bands>
                <polymorphic_bands>436 342 213 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAAAAATTCTGACTCATCAA</pcr_primer_p1>
		<pcr_primer_p2>TGGAACTCCAAATTACTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>338</pcr_amplicon_size>
		<canonical_amplicon>TTGAAAAATTCTGACTCATCAATTTTTCCCTATTTTTTCTAATTCTCTCTGTTCTCTCTTAACGATCAATTTGTCCTTCTTTTTTTCGCTTTTTTCATTTTCTCAAAAGCCTTTCGTACTCCCTTTTTTCCTTGTTCTTTATGACCCATTCTCTTTTTTCTTCTTCTTTTCTTTGACCCTTATCATTTTTCATTCGGTTCACAGTTTTAGCTGATTAATGGTTTGTCCTACAAACATTTCAAGAAAGCCAAAAATTCAGAAAATATAGAAATTCAGAAGTTCCGAATTTTTGAAATTCAGAATCTCAAATATCTGAATTTCAGTAATTTGGAGTTCCA</canonical_amplicon>
		<polymorphic_amplicon>TTGAAAAATTCTGACTCATCAATTTTTCCCTATTTTTTCTAATTCTCTCTGTTCTCTCTTAACGATCAATTTGTCCTTCTTTTTTTCGCTTTTTTCATTTTCTCAAAAGCCTTTCGTACTCCCTTTTTTCCTTGTTCTTTATGACCCATTCTCTTTTTTCTTCTTCTTTTCTTTGACCCTTATCATTTTTCATTCGGTTCACAGTTTTAGCTGATTWATGGTTTGTCCTACAAACATTTCAAGAAAGCCAAAAATTCAGAAAATATAGAAATTCAGAAGTTCCGAATTTTTGAAATTCAGAATCTCAAATATCTGAATTTCAGTAATTTGGAGTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10084</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>197051</contig_pos>
        <strand>+</strand>
        <context>AGGGCAACGT[C/T]TTCGACGTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTCCCCCTTCCCTTTCCACAACCATAATCTTATGTCAGTAGGGCAACGT</left_flank>
        <right_flank>TTCGACGTCTTCAGAAGTCGGGTTCTCGGCACGCAGGGTCTGTGCTCTTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCGGAAACTATAAGCTGTATTTTTCGAATTTCGCCTATTTTTGGTTTATTTCCGGGAAGCCGTGTAAGTGCGCTCCAATGCGAATACCGTAATCCTACAGTAAAATTAGCGTTGATCTCGAAGCGAAAGTTTCCAATTGAACTGCAACATTTGACAATTCTATACCAATTTTTTTTCTTGACCCCGAAATCCGATATCTGACCTCTACAACCCATATATAGTCATAAGAACATCAATATCCGCCCTCAAAAAAGTTTGACGTTTTTTCCTTGGCTTGTGAAGGAGAAGATGTGTTTTTGGGTGATGTCTCTCGAGACGTTTCGGCCAAAAGTGGTGAAATGACATGCAGAAAAAAGAAAAACGGAGCAACTAGTCCTCCTAGGCCTTCAGAAATACACACTAACTTCTTCTTCTTTTTCTAACGTCTTCTTCTTCTTCTTCTCCAGATGCTCCCCCTTCCCTTTCCACAACCATAATCTTATGTCAGTAGGGCAACGTTTTCGACGTCTTCAGAAGTCGGGTTCTCGGCACGCAGGGTCTGTGCTCTTCCTAACCTAATTTTTTGAACATTCTCCGAAACGGGATGGATATAAGAGGGTGGAGAGAAATAGACGGACTGAATAAAACATTTTTAATGGTCCTGAAGGAAAAGAAGAAGATGAATGAAGGGGAATCGACACAATTAGAAATAGATATTGTAGAAAAAAGTCTGGAAGGTACTTTTAACATCGATCCAATTTATCTCTGTTCCTGTGGAAGATATCAAAAAATGATCGACTAACAAAATGCTTTTGATGATATAATAAGCATTTTATTAGTTTATCTTGTATAGAAATCGAGATAAATTGAGTCAAAGTTAAGAGGTCGGCAGCCGACCGCGTAGCTCAGCCCACAAGCGCTTTTTTAACTTTGACCCAGTTTATCTCGTGTTTATCTCGGTTCCTGTAAAAGATATCAGTAAGTTGTCAACTGATAAAATGTCTTTGATAATAAAATAAT</canonical>
            <polymorphic>TCCGGAAACTATAAGCTGTATTTTTCGAATTTCGCCTATTTTTGGTTTATTTCCGGGAAGCCGTGTAAGTGCGCTCCAATGCGAATACCGTAATCCTACAGTAAAATTAGCGTTGATCTCGAAGCGAAAGTTTCCAATTGAACTGCAACATTTGACAATTCTATACCAATTTTTTTTCTTGACCCCGAAATCCGATATCTGACCTCTACAACCCATATATAGTCATAAGAACATCAATATCCGCCCTCAAAAAAGTTTGACGTTTTTTCCTTGGCTTGTGAAGGAGAAGATGTGTTTTTGGGTGATGTCTCTCGAGACGTTTCGGCCAAAAGTGGTGAAATGACATGCAGAAAAAAGAAAAACGGAGCAACTAGTCCTCCTAGGCCTTCAGAAATACACACTAACTTCTTCTTCTTTTTCTAACGTCTTCTTCTTCTTCTTCTCCAGATGCTCCCCCTTCCCTTTCCACAACCATAATCTTATGTCAGTAGGGCAACGTYTTCGACGTCTTCAGAAGTCGGGTTCTCGGCACGCAGGGTCTGTGCTCTTCCTAACCTAATTTTTTGAACATTCTCCGAAACGGGATGGATATAAGAGGGTGGAGAGAAATAGACGGACTGAATAAAACATTTTTAATGGTCCTGAAGGAAAAGAAGAAGATGAATGAAGGGGAATCGACACAATTAGAAATAGATATTGTAGAAAAAAGTCTGGAAGGTACTTTTAACATCGATCCAATTTATCTCTGTTCCTGTGGAAGATATCAAAAAATGATCGACTAACAAAATGCTTTTGATGATATAATAAGCATTTTATTAGTTTATCTTGTATAGAAATCGAGATAAATTGAGTCAAAGTTAAGAGGTCGGCAGCCGACCGCGTAGCTCAGCCCACAAGCGCTTTTTTAACTTTGACCCAGTTTATCTCGTGTTTATCTCGGTTCCTGTAAAAGATATCAGTAAGTTGTCAACTGATAAAATGTCTTTGATAATAAAATAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGGCCTTCAGAAATACACACTA</pcr_primer_p1>
		<pcr_primer_p2>TGTTTTATTCAGTCCGTCTATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAGGCCTTCAGAAATACACACTAACTTCTTCTTCTTTTTCTAACGTCTTCTTCTTCTTCTTCTCCAGATGCTCCCCCTTCCCTTTCCACAACCATAATCTTATGTCAGTAGGGCAACGTTTTCGACGTCTTCAGAAGTCGGGTTCTCGGCACGCAGGGTCTGTGCTCTTCCTAACCTAATTTTTTGAACATTCTCCGAAACGGGATGGATATAAGAGGGTGGAGAGAAATAGACGGACTGAATAAAACA</canonical_amplicon>
		<polymorphic_amplicon>TAGGCCTTCAGAAATACACACTAACTTCTTCTTCTTTTTCTAACGTCTTCTTCTTCTTCTTCTCCAGATGCTCCCCCTTCCCTTTCCACAACCATAATCTTATGTCAGTAGGGCAACGTYTTCGACGTCTTCAGAAGTCGGGTTCTCGGCACGCAGGGTCTGTGCTCTTCCTAACCTAATTTTTTGAACATTCTCCGAAACGGGATGGATATAAGAGGGTGGAGAGAAATAGACGGACTGAATAAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10085</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>197088</contig_pos>
        <strand>+</strand>
        <context>CGGCACGCAG[C/G]GTCTGTGCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGTAGGGCAACGTTTTCGACGTCTTCAGAAGTCGGGTTCTCGGCACGCAG</left_flank>
        <right_flank>GTCTGTGCTCTTCCTAACCTAATTTTTTGAACATTCTCCGAAACGGGATG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTGGTTTATTTCCGGGAAGCCGTGTAAGTGCGCTCCAATGCGAATACCGTAATCCTACAGTAAAATTAGCGTTGATCTCGAAGCGAAAGTTTCCAATTGAACTGCAACATTTGACAATTCTATACCAATTTTTTTTCTTGACCCCGAAATCCGATATCTGACCTCTACAACCCATATATAGTCATAAGAACATCAATATCCGCCCTCAAAAAAGTTTGACGTTTTTTCCTTGGCTTGTGAAGGAGAAGATGTGTTTTTGGGTGATGTCTCTCGAGACGTTTCGGCCAAAAGTGGTGAAATGACATGCAGAAAAAAGAAAAACGGAGCAACTAGTCCTCCTAGGCCTTCAGAAATACACACTAACTTCTTCTTCTTTTTCTAACGTCTTCTTCTTCTTCTTCTCCAGATGCTCCCCCTTCCCTTTCCACAACCATAATCTTATGTCAGTAGGGCAACGTTTTCGACGTCTTCAGAAGTCGGGTTCTCGGCACGCAGGGTCTGTGCTCTTCCTAACCTAATTTTTTGAACATTCTCCGAAACGGGATGGATATAAGAGGGTGGAGAGAAATAGACGGACTGAATAAAACATTTTTAATGGTCCTGAAGGAAAAGAAGAAGATGAATGAAGGGGAATCGACACAATTAGAAATAGATATTGTAGAAAAAAGTCTGGAAGGTACTTTTAACATCGATCCAATTTATCTCTGTTCCTGTGGAAGATATCAAAAAATGATCGACTAACAAAATGCTTTTGATGATATAATAAGCATTTTATTAGTTTATCTTGTATAGAAATCGAGATAAATTGAGTCAAAGTTAAGAGGTCGGCAGCCGACCGCGTAGCTCAGCCCACAAGCGCTTTTTTAACTTTGACCCAGTTTATCTCGTGTTTATCTCGGTTCCTGTAAAAGATATCAGTAAGTTGTCAACTGATAAAATGTCTTTGATAATAAAATAATCATTTTGTTAATTGACCATTTTTTGTTACCTTGTATA</canonical>
            <polymorphic>ATTTTTGGTTTATTTCCGGGAAGCCGTGTAAGTGCGCTCCAATGCGAATACCGTAATCCTACAGTAAAATTAGCGTTGATCTCGAAGCGAAAGTTTCCAATTGAACTGCAACATTTGACAATTCTATACCAATTTTTTTTCTTGACCCCGAAATCCGATATCTGACCTCTACAACCCATATATAGTCATAAGAACATCAATATCCGCCCTCAAAAAAGTTTGACGTTTTTTCCTTGGCTTGTGAAGGAGAAGATGTGTTTTTGGGTGATGTCTCTCGAGACGTTTCGGCCAAAAGTGGTGAAATGACATGCAGAAAAAAGAAAAACGGAGCAACTAGTCCTCCTAGGCCTTCAGAAATACACACTAACTTCTTCTTCTTTTTCTAACGTCTTCTTCTTCTTCTTCTCCAGATGCTCCCCCTTCCCTTTCCACAACCATAATCTTATGTCAGTAGGGCAACGTTTTCGACGTCTTCAGAAGTCGGGTTCTCGGCACGCAGSGTCTGTGCTCTTCCTAACCTAATTTTTTGAACATTCTCCGAAACGGGATGGATATAAGAGGGTGGAGAGAAATAGACGGACTGAATAAAACATTTTTAATGGTCCTGAAGGAAAAGAAGAAGATGAATGAAGGGGAATCGACACAATTAGAAATAGATATTGTAGAAAAAAGTCTGGAAGGTACTTTTAACATCGATCCAATTTATCTCTGTTCCTGTGGAAGATATCAAAAAATGATCGACTAACAAAATGCTTTTGATGATATAATAAGCATTTTATTAGTTTATCTTGTATAGAAATCGAGATAAATTGAGTCAAAGTTAAGAGGTCGGCAGCCGACCGCGTAGCTCAGCCCACAAGCGCTTTTTTAACTTTGACCCAGTTTATCTCGTGTTTATCTCGGTTCCTGTAAAAGATATCAGTAAGTTGTCAACTGATAAAATGTCTTTGATAATAAAATAATCATTTTGTTAATTGACCATTTTTTGTTACCTTGTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGGCCTTCAGAAATACACACTA</pcr_primer_p1>
		<pcr_primer_p2>TGTTTTATTCAGTCCGTCTATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAGGCCTTCAGAAATACACACTAACTTCTTCTTCTTTTTCTAACGTCTTCTTCTTCTTCTTCTCCAGATGCTCCCCCTTCCCTTTCCACAACCATAATCTTATGTCAGTAGGGCAACGTTTTCGACGTCTTCAGAAGTCGGGTTCTCGGCACGCAGGGTCTGTGCTCTTCCTAACCTAATTTTTTGAACATTCTCCGAAACGGGATGGATATAAGAGGGTGGAGAGAAATAGACGGACTGAATAAAACA</canonical_amplicon>
		<polymorphic_amplicon>TAGGCCTTCAGAAATACACACTAACTTCTTCTTCTTTTTCTAACGTCTTCTTCTTCTTCTTCTCCAGATGCTCCCCCTTCCCTTTCCACAACCATAATCTTATGTCAGTAGGGCAACGTTTTCGACGTCTTCAGAAGTCGGGTTCTCGGCACGCAGSGTCTGTGCTCTTCCTAACCTAATTTTTTGAACATTCTCCGAAACGGGATGGATATAAGAGGGTGGAGAGAAATAGACGGACTGAATAAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10086</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>197124</contig_pos>
        <strand>+</strand>
        <context>TTTGAACATT[C/T]TCCGAAACGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTCGGCACGCAGGGTCTGTGCTCTTCCTAACCTAATTTTTTGAACATT</left_flank>
        <right_flank>TCCGAAACGGGATGGATATAAGAGGGTGGAGAGAAATAGACGGACTGAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCAATGCGAATACCGTAATCCTACAGTAAAATTAGCGTTGATCTCGAAGCGAAAGTTTCCAATTGAACTGCAACATTTGACAATTCTATACCAATTTTTTTTCTTGACCCCGAAATCCGATATCTGACCTCTACAACCCATATATAGTCATAAGAACATCAATATCCGCCCTCAAAAAAGTTTGACGTTTTTTCCTTGGCTTGTGAAGGAGAAGATGTGTTTTTGGGTGATGTCTCTCGAGACGTTTCGGCCAAAAGTGGTGAAATGACATGCAGAAAAAAGAAAAACGGAGCAACTAGTCCTCCTAGGCCTTCAGAAATACACACTAACTTCTTCTTCTTTTTCTAACGTCTTCTTCTTCTTCTTCTCCAGATGCTCCCCCTTCCCTTTCCACAACCATAATCTTATGTCAGTAGGGCAACGTTTTCGACGTCTTCAGAAGTCGGGTTCTCGGCACGCAGGGTCTGTGCTCTTCCTAACCTAATTTTTTGAACATTCTCCGAAACGGGATGGATATAAGAGGGTGGAGAGAAATAGACGGACTGAATAAAACATTTTTAATGGTCCTGAAGGAAAAGAAGAAGATGAATGAAGGGGAATCGACACAATTAGAAATAGATATTGTAGAAAAAAGTCTGGAAGGTACTTTTAACATCGATCCAATTTATCTCTGTTCCTGTGGAAGATATCAAAAAATGATCGACTAACAAAATGCTTTTGATGATATAATAAGCATTTTATTAGTTTATCTTGTATAGAAATCGAGATAAATTGAGTCAAAGTTAAGAGGTCGGCAGCCGACCGCGTAGCTCAGCCCACAAGCGCTTTTTTAACTTTGACCCAGTTTATCTCGTGTTTATCTCGGTTCCTGTAAAAGATATCAGTAAGTTGTCAACTGATAAAATGTCTTTGATAATAAAATAATCATTTTGTTAATTGACCATTTTTTGTTACCTTGTATAGGAATCAAGATAAATTGAGTCAAAGTTGAGTGGTCG</canonical>
            <polymorphic>CTCCAATGCGAATACCGTAATCCTACAGTAAAATTAGCGTTGATCTCGAAGCGAAAGTTTCCAATTGAACTGCAACATTTGACAATTCTATACCAATTTTTTTTCTTGACCCCGAAATCCGATATCTGACCTCTACAACCCATATATAGTCATAAGAACATCAATATCCGCCCTCAAAAAAGTTTGACGTTTTTTCCTTGGCTTGTGAAGGAGAAGATGTGTTTTTGGGTGATGTCTCTCGAGACGTTTCGGCCAAAAGTGGTGAAATGACATGCAGAAAAAAGAAAAACGGAGCAACTAGTCCTCCTAGGCCTTCAGAAATACACACTAACTTCTTCTTCTTTTTCTAACGTCTTCTTCTTCTTCTTCTCCAGATGCTCCCCCTTCCCTTTCCACAACCATAATCTTATGTCAGTAGGGCAACGTTTTCGACGTCTTCAGAAGTCGGGTTCTCGGCACGCAGGGTCTGTGCTCTTCCTAACCTAATTTTTTGAACATTYTCCGAAACGGGATGGATATAAGAGGGTGGAGAGAAATAGACGGACTGAATAAAACATTTTTAATGGTCCTGAAGGAAAAGAAGAAGATGAATGAAGGGGAATCGACACAATTAGAAATAGATATTGTAGAAAAAAGTCTGGAAGGTACTTTTAACATCGATCCAATTTATCTCTGTTCCTGTGGAAGATATCAAAAAATGATCGACTAACAAAATGCTTTTGATGATATAATAAGCATTTTATTAGTTTATCTTGTATAGAAATCGAGATAAATTGAGTCAAAGTTAAGAGGTCGGCAGCCGACCGCGTAGCTCAGCCCACAAGCGCTTTTTTAACTTTGACCCAGTTTATCTCGTGTTTATCTCGGTTCCTGTAAAAGATATCAGTAAGTTGTCAACTGATAAAATGTCTTTGATAATAAAATAATCATTTTGTTAATTGACCATTTTTTGTTACCTTGTATAGGAATCAAGATAAATTGAGTCAAAGTTGAGTGGTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGGCCTTCAGAAATACACACTA</pcr_primer_p1>
		<pcr_primer_p2>TGTTTTATTCAGTCCGTCTATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAGGCCTTCAGAAATACACACTAACTTCTTCTTCTTTTTCTAACGTCTTCTTCTTCTTCTTCTCCAGATGCTCCCCCTTCCCTTTCCACAACCATAATCTTATGTCAGTAGGGCAACGTTTTCGACGTCTTCAGAAGTCGGGTTCTCGGCACGCAGGGTCTGTGCTCTTCCTAACCTAATTTTTTGAACATTCTCCGAAACGGGATGGATATAAGAGGGTGGAGAGAAATAGACGGACTGAATAAAACA</canonical_amplicon>
		<polymorphic_amplicon>TAGGCCTTCAGAAATACACACTAACTTCTTCTTCTTTTTCTAACGTCTTCTTCTTCTTCTTCTCCAGATGCTCCCCCTTCCCTTTCCACAACCATAATCTTATGTCAGTAGGGCAACGTTTTCGACGTCTTCAGAAGTCGGGTTCTCGGCACGCAGGGTCTGTGCTCTTCCTAACCTAATTTTTTGAACATTYTCCGAAACGGGATGGATATAAGAGGGTGGAGAGAAATAGACGGACTGAATAAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10088</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>199159</contig_pos>
        <strand></strand>
        <context>AGAAAAAATC[G/A]AAAATTCAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGAACAGATTTTTTTTGAAGAGAAGAAGTGACGTGGCATGAGAAAAAATC</left_flank>
        <right_flank>AAAATTCAGGTGGACCTGAAAAAAAACAGGGATCAGGTTTCTAGCTTGGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAAAAAGTTCGAAGTACTTTTGTAGGGCCTCAAAAATGACTATTTTTCCATGGTGTCTCTGAAAGAATATTTCTAGTCAACAATTTTTCAGATTAGTACAGTTTCTCTGCGTCTCCCAATTTGTTCTAAAAACCAAATCCTTTATAATACATGTGTATACAAATATTCTGAAGATGTGCTTCTTCTTCTCCTCAAGAGAGAAAAAAGTGGTTGGGATTCGTTCCGTTCTTCAGTGCCTCTTGGCACCCCCTCTCCTCTTTTTCTCCCCTTCCAGTTGAGCCCCATATGATGATTTATGGGTTATGCACAGTAGTTTGTAGAAGAAGAAGAAGAAGGGACGAATGAATTCGGCGAAAAAAGCCTCTCTTCCGATTTAGGTCCTGATTTCCGGTCGGGAAGAGAGAAGTGAACTGATGTATTTCATGTGTGGAGGGAAAACGAGAAGTGGAACAGATTTTTTTTGAAGAGAAGAAGTGACGTGGCATGAGAAAAAATCGAAAATTCAGGTGGACCTGAAAAAAAACAGGGATCAGGTTTCTAGCTTGGAATCGAGATCTAGGACTACAGTTAGAGCCGAATGCTCCAGAAGATATGTGAACTTTGAGCTAAATTATCTCGTCTCCTTCAAAAGATATCAAAAATTTGTCAACTAATAAAATGTTTATCATAGAATTATCAACATTTAGTCAATTTTCAATTTTTTGATATCTTCCTTAGGAGGCGAGATAATTGAGCTCAAAGTTGACGGTTAAGGTGAGCTTCTATTTAAGAAGATATGCTATCTGTTCTTTGAGCTCAATTATCTTGATTTCTATCAGAGATATCAAAAATATGTCGACTGATGAAATATTTTTCATAAAATTGTCAACATTTTATCAATTGACAAATTTTGATATCCCTTACAGTAATCAAGTTAATTGAGCTCGAAGTAAAAGTATGGGGTGGCGGCAGTTGTGGTGATTGAAAAATGTTCCGTCAGTTTCTTTTTTTTCAAAAC</canonical>
            <polymorphic>TTTGAAAAAGTTCGAAGTACTTTTGTAGGGCCTCAAAAATGACTATTTTTCCATGGTGTCTCTGAAAGAATATTTCTAGTCAACAATTTTTCAGATTAGTACAGTTTCTCTGCGTCTCCCAATTTGTTCTAAAAACCAAATCCTTTATAATACATGTGTATACAAATATTCTGAAGATGTGCTTCTTCTTCTCCTCAAGAGAGAAAAAAGTGGTTGGGATTCGTTCCGTTCTTCAGTGCCTCTTGGCACCCCCTCTCCTCTTTTTCTCCCCTTCCAGTTGAGCCCCATATGATGATTTATGGGTTATGCACAGTAGTTTGTAGAAGAAGAAGAAGAAGGGACGAATGAATTCGGCGAAAAAAGCCTCTCTTCCGATTTAGGTCCTGATTTCCGGTCGGGAAGAGAGAAGTGAACTGATGTATTTCATGTGTGGAGGGAAAACGAGAAGTGGAACAGATTTTTTTTGAAGAGAAGAAGTGACGTGGCATGAGAAAAAATCRAAAATTCAGGTGGACCTGAAAAAAAACAGGGATCAGGTTTCTAGCTTGGAATCGAGATCTAGGACTACAGTTAGAGCCGAATGCTCCAGAAGATATGTGAACTTTGAGCTAAATTATCTCGTCTCCTTCAAAAGATATCAAAAATTTGTCAACTAATAAAATGTTTATCATAGAATTATCAACATTTAGTCAATTTTCAATTTTTTGATATCTTCCTTAGGAGGCGAGATAATTGAGCTCAAAGTTGACGGTTAAGGTGAGCTTCTATTTAAGAAGATATGCTATCTGTTCTTTGAGCTCAATTATCTTGATTTCTATCAGAGATATCAAAAATATGTCGACTGATGAAATATTTTTCATAAAATTGTCAACATTTTATCAATTGACAAATTTTGATATCCCTTACAGTAATCAAGTTAATTGAGCTCGAAGTAAAAGTATGGGGTGGCGGCAGTTGTGGTGATTGAAAAATGTTCCGTCAGTTTCTTTTTTTTCAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>486 286 89 72 54 13</canonical_bands>
                <polymorphic_bands>540 286 89 72 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAGAAGGGACGAATGAAT</pcr_primer_p1>
		<pcr_primer_p2>CGGCTCTAACTGTAGTCCTAGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGAAGAAGGGACGAATGAATTCGGCGAAAAAAGCCTCTCTTCCGATTTAGGTCCTGATTTCCGGTCGGGAAGAGAGAAGTGAACTGATGTATTTCATGTGTGGAGGGAAAACGAGAAGTGGAACAGATTTTTTTTGAAGAGAAGAAGTGACGTGGCATGAGAAAAAATCGAAAATTCAGGTGGACCTGAAAAAAAACAGGGATCAGGTTTCTAGCTTGGAATCGAGATCTAGGACTACAGTTAGAGCCG</canonical_amplicon>
		<polymorphic_amplicon>AGAAGAAGGGACGAATGAATTCGGCGAAAAAAGCCTCTCTTCCGATTTAGGTCCTGATTTCCGGTCGGGAAGAGAGAAGTGAACTGATGTATTTCATGTGTGGAGGGAAAACGAGAAGTGGAACAGATTTTTTTTGAAGAGAAGAAGTGACGTGGCATGAGAAAAAATCRAAAATTCAGGTGGACCTGAAAAAAAACAGGGATCAGGTTTCTAGCTTGGAATCGAGATCTAGGACTACAGTTAGAGCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10089</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>91357</contig_pos>
        <strand></strand>
        <context>TCTGCTGATC[A/C]MTGTACTTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACTGTCCTCAGAAGACTTGAACAATGTCTGAAGACAAAGATCTGCTGATC</left_flank>
        <right_flank>CTGTACTTTGACTCAAAAGAGTTCCTTCGTCTAACTGGGCTATGAAAGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCAAAGAGCAGACAAAAATAGAGAGAAAACCCGGGTTGTGTCCCAATTTGTTTCTTTTCAAGTTTTTTCTCCTTATTTTTTTCTTTGTCGCCATGTTTTGATGTATCATGTTTTTGCATTCTCCATTCTTTTTTCGCTGTTTTTTTTAAAGAATCAACACAGAGAAACACAGGAAACAATTTTTGGGAAAAAGACAAGGAAGGTGAATCGAAAATGAAACTGATTCTGTCAAAAAATGTGTGAAATCGGAGAGAAATGGAATCCTCCCAGACATTTGTTTGTTCCAGAAGAGATTAGCCATTTCGTGTAAACTTTCAGAAATAGATGTATGTTTTCTGAAAAATATGAAGGCACGAAGCAAAGAAGAAGAAGAAGAAGGACCAAAAATGAAAGAAAATGAGAAAATGGGTGGTAACGTGAGTAGGGGTTTAGAAAGTTGATGAAGTGAACTGTCCTCAGAAGACTTGAACAATGTCTGAAGACAAAGATCTGCTGATCACTGTACTTTGACTCAAAAGAGTTCCTTCGTCTAACTGGGCTATGAAAGATACAAACTTGCTCTCAAAACCCTAGTAGATAAAGAAAGCCATACAGTAGGAAATCTAGACATCTTCTTCTTCTTCTTATTCATCCGAACCGACCCGCCTACCACTGAATGAAAGTGAATACCAAAAAAAATAGCTTAAGAAATCTCATTGAGTCTGACGACGCCGTCGTTGTGTTCAACGAGCACATCCGCTGTCGATGTGTGATTAGCATACGCGTGGCAGAATGCCTTTTCTTTCTCCTAGAACAGTATGTCACATACCACTCCCAGGGGCTCAATTCCTCATTCTCCGCTATTTTTCTGCTCAAAAGAATGTCAACCAAAAATAACGGGCGGTGTCGGTGAAGAAAAAAAAAACATAACAATGACAAACATGAGCATTTACTGTGATGGAAGATTCCCTCTGTAATCTAACACTTCCGTTCTGTCTTCTCAAATAAAAATTACCACTG</canonical>
            <polymorphic>GGCAAAGAGCAGACAAAAATAGAGAGAAAACCCGGGTTGTGTCCCAATTTGTTTCTTTTCAAGTTTTTTCTCCTTATTTTTTTCTTTGTCGCCATGTTTTGATGTATCATGTTTTTGCATTCTCCATTCTTTTTTCGCTGTTTTTTTTAAAGAATCAACACAGAGAAACACAGGAAACAATTTTTGGGAAAAAGACAAGGAAGGTGAATCGAAAATGAAACTGATTCTGTCAAAAAATGTGTGAAATCGGAGAGAAATGGAATCCTCCCAGACATTTGTTTGTTCCAGAAGAGATTAGCCATTTCGTGTAAACTTTCAGAAATAGATGTATGTTTTCTGAAAAATATGAAGGCACGAAGCAAAGAAGAAGAAGAAGAAGGACCAAAAATGAAAGAAAATGAGAAAATGGGTGGTAACGTGAGTAGGGGTTTAGAAAGTTGATGAAGTGAACTGTCCTCAGAAGACTTGAACAATGTCTGAAGACAAAGATCTGCTGATCMCTGTACTTTGACTCAAAAGAGTTCCTTCGTCTAACTGGGCTATGAAAGATACAAACTTGCTCTCAAAACCCTAGTAGATAAAGAAAGCCATACAGTAGGAAATCTAGACATCTTCTTCTTCTTCTTATTCATCCGAACCGACCCGCCTACCACTGAATGAAAGTGAATACCAAAAAAAATAGCTTAAGAAATCTCATTGAGTCTGACGACGCCGTCGTTGTGTTCAACGAGCACATCCGCTGTCGATGTGTGATTAGCATACGCGTGGCAGAATGCCTTTTCTTTCTCCTAGAACAGTATGTCACATACCACTCCCAGGGGCTCAATTCCTCATTCTCCGCTATTTTTCTGCTCAAAAGAATGTCAACCAAAAATAACGGGCGGTGTCGGTGAAGAAAAAAAAAACATAACAATGACAAACATGAGCATTTACTGTGATGGAAGATTCCCTCTGTAATCTAACACTTCCGTTCTGTCTTCTCAAATAAAAATTACCACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>452 202 138 92 66 50</canonical_bands>
                <polymorphic_bands>452 202 142 138 66</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>152 119 75 65 58 57 52 46 45 41 37 36 35 33 28 27 17 15 13 11 10 8 7 6 3 2 2</canonical_bands>
                <polymorphic_bands>204 119 75 65 58 57 46 45 41 37 36 35 33 28 27 17 15 13 11 10 8 7 6 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCAAAGAAGAAGAAGAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>AGATTTCCTACTGTATGGCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGCAAAGAAGAAGAAGAAGAAGGACCAAAAATGAAAGAAAATGAGAAAATGGGTGGTAACGTGAGTAGGGGTTTAGAAAGTTGATGAAGTGAACTGTCCTCAGAAGACTTGAACAATGTCTGAAGACAAAGATCTGCTGATCACTGTACTTTGACTCAAAAGAGTTCCTTCGTCTAACTGGGCTATGAAAGATACAAACTTGCTCTCAAAACCCTAGTAGATAAAGAAAGCCATACAGTAGGAAATCT</canonical_amplicon>
		<polymorphic_amplicon>AAGCAAAGAAGAAGAAGAAGAAGGACCAAAAATGAAAGAAAATGAGAAAATGGGTGGTAACGTGAGTAGGGGTTTAGAAAGTTGATGAAGTGAACTGTCCTCAGAAGACTTGAACAATGTCTGAAGACAAAGATCTGCTGATCMCTGTACTTTGACTCAAAAGAGTTCCTTCGTCTAACTGGGCTATGAAAGATACAAACTTGCTCTCAAAACCCTAGTAGATAAAGAAAGCCATACAGTAGGAAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10090</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>148060</contig_pos>
        <strand>+</strand>
        <context>TAGTAAGTTT[G/T]GAACTAATCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGAGATACACTCCTATTCATTACCCTCATAAACACCATCTAGTAAGTTT</left_flank>
        <right_flank>GAACTAATCAACAACAAAAAAAATTCAACCATTTTCTTCCAGCTCAACAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGTTGAACGAAGATGTGGGAGTTATAATAAACTTGAATTCCAACTACTCTAATTATCAGTTTGACTTTCGAACATTTCCCGTTCTTCTGTCTATTTTCCCATTTTTGTACATGATTCCAACTTGTTTTGTTACATTTCGCATAATCGAAGTTTTCATCAAGAAAGGAGTTAGAAAACATGATGAAACAATCAACAGGAACGTTTTCCTTGTTATCATTTTATCCCAACTAACAGTAAGTTCAAGAATATTCCTTGATTTTTATACCTTTCTGTTTTTAGTGTCTCTGTTATTTCTTCTGTGATTTCGTGATGATCCGTCTTCCATCCACAGGAATTTTGACTTCTTGGTGCCAACGAAACCCACCAAACCTCAACCTGACGATTTTCTTCACATCCCACATGTATTTCAGCTATCCTCTAATGATTTACCCAGTTTTACTCGCTATAGTGAGATACACTCCTATTCATTACCCTCATAAACACCATCTAGTAAGTTTGGAACTAATCAACAACAAAAAAAATTCAACCATTTTCTTCCAGCTCAACACTAAAATCCTCTCCTTCAGTATTCCAATAATCCACTTCTATCCATTTCCCTTTCTATTTTTCATGTTCCCAGCTCTTGGTGTCTGCCGTCAATTAAAACCACCGTATCCATTTGGATCTGCATTCATTCATTTCATTGAATCTTGGCATGGAGTGAGTTCCTCGAAAAATTACCTACAAAATCCTATGGAACTTCAGTTAATAAACATGCCATTCCAAATGCTGAACACTTCATTTTGGTTTGTAATTTATCTTGTGAGCAATGTTTGTTTGCATCGAGAGCTTCACAAACTGAGTGGTACTTCCCCGTGGTAATTTCAGTTTTGCAACAGTACCACAGATCCAAATATGCGTAGTGCGCTCCACCGCACATTTTAAAAAATTTAACATGCGCTTTTTCGCTCATCGTTGTACGTTTGATACTCAGCCAACGAAAAGATAGAAAAATAAGA</canonical>
            <polymorphic>AATGTTGAACGAAGATGTGGGAGTTATAATAAACTTGAATTCCAACTACTCTAATTATCAGTTTGACTTTCGAACATTTCCCGTTCTTCTGTCTATTTTCCCATTTTTGTACATGATTCCAACTTGTTTTGTTACATTTCGCATAATCGAAGTTTTCATCAAGAAAGGAGTTAGAAAACATGATGAAACAATCAACAGGAACGTTTTCCTTGTTATCATTTTATCCCAACTAACAGTAAGTTCAAGAATATTCCTTGATTTTTATACCTTTCTGTTTTTAGTGTCTCTGTTATTTCTTCTGTGATTTCGTGATGATCCGTCTTCCATCCACAGGAATTTTGACTTCTTGGTGCCAACGAAACCCACCAAACCTCAACCTGACGATTTTCTTCACATCCCACATGTATTTCAGCTATCCTCTAATGATTTACCCAGTTTTACTCGCTATAGTGAGATACACTCCTATTCATTACCCTCATAAACACCATCTAGTAAGTTTKGAACTAATCAACAACAAAAAAAATTCAACCATTTTCTTCCAGCTCAACACTAAAATCCTCTCCTTCAGTATTCCAATAATCCACTTCTATCCATTTCCCTTTCTATTTTTCATGTTCCCAGCTCTTGGTGTCTGCCGTCAATTAAAACCACCGTATCCATTTGGATCTGCATTCATTCATTTCATTGAATCTTGGCATGGAGTGAGTTCCTCGAAAAATTACCTACAAAATCCTATGGAACTTCAGTTAATAAACATGCCATTCCAAATGCTGAACACTTCATTTTGGTTTGTAATTTATCTTGTGAGCAATGTTTGTTTGCATCGAGAGCTTCACAAACTGAGTGGTACTTCCCCGTGGTAATTTCAGTTTTGCAACAGTACCACAGATCCAAATATGCGTAGTGCGCTCCACCGCACATTTTAAAAAATTTAACATGCGCTTTTTCGCTCATCGTTGTACGTTTGATACTCAGCCAACGAAAAGATAGAAAAATAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCTCTAATGATTTACCCAGTT</pcr_primer_p1>
		<pcr_primer_p2>AATGGATACGGTGGTTTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATCCTCTAATGATTTACCCAGTTTTACTCGCTATAGTGAGATACACTCCTATTCATTACCCTCATAAACACCATCTAGTAAGTTTGGAACTAATCAACAACAAAAAAAATTCAACCATTTTCTTCCAGCTCAACACTAAAATCCTCTCCTTCAGTATTCCAATAATCCACTTCTATCCATTTCCCTTTCTATTTTTCATGTTCCCAGCTCTTGGTGTCTGCCGTCAATTAAAACCACCGTATCCATT</canonical_amplicon>
		<polymorphic_amplicon>ATCCTCTAATGATTTACCCAGTTTTACTCGCTATAGTGAGATACACTCCTATTCATTACCCTCATAAACACCATCTAGTAAGTTTKGAACTAATCAACAACAAAAAAAATTCAACCATTTTCTTCCAGCTCAACACTAAAATCCTCTCCTTCAGTATTCCAATAATCCACTTCTATCCATTTCCCTTTCTATTTTTCATGTTCCCAGCTCTTGGTGTCTGCCGTCAATTAAAACCACCGTATCCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10105</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>166046</contig_pos>
        <strand>+</strand>
        <context>ttttttatag[A/T]aaaaaaaata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAATATCATCAACCACATCACACAGTTAGTTTTTCTCTTATTTTTTATAG</left_flank>
        <right_flank>AAAAAAAATAAAATCTCAAAACTAAACCAAATCTAAACAGATGGTGGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATACCATCAAAAGAATGTCAGCCGACGACTCTGCCATCAATGTATATTATATTCTCGGCAATGGCTTCATTCATTGTTCCTGCATTTGTGATGGTTATTCTGAATGTCAGAATATTTCAAACAGTCCTTCACACTTCGAGAACAATGACTGTAAAGTCCAAGAATGGGTCATTGAGAGTTCACAGAAGAAAGGAACCAATCGTTCCAGTGAAGGTGAGCCCTGAGATTATTAACAAATCAGCCTCGTGGTTTTCAGAAACTCGAGAGATACGAAACTCGATTGAGTCAAGAGGATGAAGGCGTGGGATCTCCATCAAAAGAAGTCATTGACCCGATTCCTGTCGTGGCTGCAGTCGTTGAAAAGCACAAGAATTCCGTCGATGCACCCGCAATTCGCTCTTTTCTCACGCACACTGTGGTTTTTGGAGTTTTGGAAGCCAAAAAGACCAATATCATCAACCACATCACACAGTTAGTTTTTCTCTTATTTTTTATAGAAAAAAAAATAAAATCTCAAAACTAAACCAAATCTAAACAGATGGTGGAGAAGAAGCATGGTTCGGTCACCGAATCGAACCCCCAGGTATGTTTATAGTTCCAAGAGAGACGAGTGGCATACTGTTACAATAAGCTTTTGTTTTTGCAAATCTATCAAAAAAGTGTCTCCTCATTTGCATACCGTACTCTTGTCGTTTTTAAACCTTTTTGTTCATTCAGTAACTTTATATTTTTAACAATAAATTCGGAAGACTATTTATTCCTGAATCTCAAATTTCGCTTGAAACTATCGCCTAATTCGGGTTTCCGTATGATGACTTCCATTTTTTATCACGCTACTCTGAGCACTCACTAAAAATTTGTAAATTATGAGTAAACTTATTTCACTGAAATTTTCCCAATCACTGCTCGAAATGTGTGATCTCCCTATTTTTGATCATATTCTTTTTTCCTTAATCTAACTTCCTCTTTTTCAGAAAGAAGTGCATGAGACGATCTAT</canonical>
            <polymorphic>CGATACCATCAAAAGAATGTCAGCCGACGACTCTGCCATCAATGTATATTATATTCTCGGCAATGGCTTCATTCATTGTTCCTGCATTTGTGATGGTTATTCTGAATGTCAGAATATTTCAAACAGTCCTTCACACTTCGAGAACAATGACTGTAAAGTCCAAGAATGGGTCATTGAGAGTTCACAGAAGAAAGGAACCAATCGTTCCAGTGAAGGTGAGCCCTGAGATTATTAACAAATCAGCCTCGTGGTTTTCAGAAACTCGAGAGATACGAAACTCGATTGAGTCAAGAGGATGAAGGCGTGGGATCTCCATCAAAAGAAGTCATTGACCCGATTCCTGTCGTGGCTGCAGTCGTTGAAAAGCACAAGAATTCCGTCGATGCACCCGCAATTCGCTCTTTTCTCACGCACACTGTGGTTTTTGGAGTTTTGGAAGCCAAAAAGACCAATATCATCAACCACATCACACAGTTAGTTTTTCTCTTATTTTTTATAGWAAAAAAAATAAAATCTCAAAACTAAACCAAATCTAAACAGATGGTGGAGAAGAAGCATGGTTCGGTCACCGAATCGAACCCCCAGGTATGTTTATAGTTCCAAGAGAGACGAGTGGCATACTGTTACAATAAGCTTTTGTTTTTGCAAATCTATCAAAAAAGTGTCTCCTCATTTGCATACCGTACTCTTGTCGTTTTTAAACCTTTTTGTTCATTCAGTAACTTTATATTTTTAACAATAAATTCGGAAGACTATTTATTCCTGAATCTCAAATTTCGCTTGAAACTATCGCCTAATTCGGGTTTCCGTATGATGACTTCCATTTTTTATCACGCTACTCTGAGCACTCACTAAAAATTTGTAAATTATGAGTAAACTTATTTCACTGAAATTTTCCCAATCACTGCTCGAAATGTGTGATCTCCCTATTTTTGATCATATTCTTTTTTCCTTAATCTAACTTCCTCTTTTTCAGAAAGAAGTGCATGAGACGATCTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGACCAATATCATCAACCAC</pcr_primer_p1>
		<pcr_primer_p2>GACAAGAGTACGGTATGCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGACCAATATCATCAACCACATCACACAGTTAGTTTTTCTCTTATTTTTTATAGAAAAAAAAATAAAATCTCAAAACTAAACCAAATCTAAACAGATGGTGGAGAAGAAGCATGGTTCGGTCACCGAATCGAACCCCCAGGTATGTTTATAGTTCCAAGAGAGACGAGTGGCATACTGTTACAATAAGCTTTTGTTTTTGCAAATCTATCAAAAAAGTGTCTCCTCATTTGCATACCGTACTCTTGTC</canonical_amplicon>
		<polymorphic_amplicon>AAAGACCAATATCATCAACCACATCACACAGTTAGTTTTTCTCTTATTTTTTATAGWAAAAAAAATAAAATCTCAAAACTAAACCAAATCTAAACAGATGGTGGAGAAGAAGCATGGTTCGGTCACCGAATCGAACCCCCAGGTATGTTTATAGTTCCAAGAGAGACGAGTGGCATACTGTTACAATAAGCTTTTGTTTTTGCAAATCTATCAAAAAAGTGTCTCCTCATTTGCATACCGTACTCTTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10120</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>166071</contig_pos>
        <strand></strand>
        <context>CTCAAAACTA[A/T]ACCAAATCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAGTTTTTCTCTTATTTTTTATAGAAAAAAAAATAAAATCTCAAAACTA</left_flank>
        <right_flank>ACCAAATCTAAACAGATGGTGGAGAAGAAGCATGGTTCGGTCACCGAATC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGACTCTGCCATCAATGTATATTATATTCTCGGCAATGGCTTCATTCATTGTTCCTGCATTTGTGATGGTTATTCTGAATGTCAGAATATTTCAAACAGTCCTTCACACTTCGAGAACAATGACTGTAAAGTCCAAGAATGGGTCATTGAGAGTTCACAGAAGAAAGGAACCAATCGTTCCAGTGAAGGTGAGCCCTGAGATTATTAACAAATCAGCCTCGTGGTTTTCAGAAACTCGAGAGATACGAAACTCGATTGAGTCAAGAGGATGAAGGCGTGGGATCTCCATCAAAAGAAGTCATTGACCCGATTCCTGTCGTGGCTGCAGTCGTTGAAAAGCACAAGAATTCCGTCGATGCACCCGCAATTCGCTCTTTTCTCACGCACACTGTGGTTTTTGGAGTTTTGGAAGCCAAAAAGACCAATATCATCAACCACATCACACAGTTAGTTTTTCTCTTATTTTTTATAGAAAAAAAAATAAAATCTCAAAACTAAACCAAATCTAAACAGATGGTGGAGAAGAAGCATGGTTCGGTCACCGAATCGAACCCCCAGGTATGTTTATAGTTCCAAGAGAGACGAGTGGCATACTGTTACAATAAGCTTTTGTTTTTGCAAATCTATCAAAAAAGTGTCTCCTCATTTGCATACCGTACTCTTGTCGTTTTTAAACCTTTTTGTTCATTCAGTAACTTTATATTTTTAACAATAAATTCGGAAGACTATTTATTCCTGAATCTCAAATTTCGCTTGAAACTATCGCCTAATTCGGGTTTCCGTATGATGACTTCCATTTTTTATCACGCTACTCTGAGCACTCACTAAAAATTTGTAAATTATGAGTAAACTTATTTCACTGAAATTTTCCCAATCACTGCTCGAAATGTGTGATCTCCCTATTTTTGATCATATTCTTTTTTCCTTAATCTAACTTCCTCTTTTTCAGAAAGAAGTGCATGAGACGATCTATTCGAACCGAAATGCGAGTTGCTCGT</canonical>
            <polymorphic>GACGACTCTGCCATCAATGTATATTATATTCTCGGCAATGGCTTCATTCATTGTTCCTGCATTTGTGATGGTTATTCTGAATGTCAGAATATTTCAAACAGTCCTTCACACTTCGAGAACAATGACTGTAAAGTCCAAGAATGGGTCATTGAGAGTTCACAGAAGAAAGGAACCAATCGTTCCAGTGAAGGTGAGCCCTGAGATTATTAACAAATCAGCCTCGTGGTTTTCAGAAACTCGAGAGATACGAAACTCGATTGAGTCAAGAGGATGAAGGCGTGGGATCTCCATCAAAAGAAGTCATTGACCCGATTCCTGTCGTGGCTGCAGTCGTTGAAAAGCACAAGAATTCCGTCGATGCACCCGCAATTCGCTCTTTTCTCACGCACACTGTGGTTTTTGGAGTTTTGGAAGCCAAAAAGACCAATATCATCAACCACATCACACAGTTAGTTTTTCTCTTATTTTTTATAGAAAAAAAAATAAAATCTCAAAACTAWACCAAATCTAAACAGATGGTGGAGAAGAAGCATGGTTCGGTCACCGAATCGAACCCCCAGGTATGTTTATAGTTCCAAGAGAGACGAGTGGCATACTGTTACAATAAGCTTTTGTTTTTGCAAATCTATCAAAAAAGTGTCTCCTCATTTGCATACCGTACTCTTGTCGTTTTTAAACCTTTTTGTTCATTCAGTAACTTTATATTTTTAACAATAAATTCGGAAGACTATTTATTCCTGAATCTCAAATTTCGCTTGAAACTATCGCCTAATTCGGGTTTCCGTATGATGACTTCCATTTTTTATCACGCTACTCTGAGCACTCACTAAAAATTTGTAAATTATGAGTAAACTTATTTCACTGAAATTTTCCCAATCACTGCTCGAAATGTGTGATCTCCCTATTTTTGATCATATTCTTTTTTCCTTAATCTAACTTCCTCTTTTTCAGAAAGAAGTGCATGAGACGATCTATTCGAACCGAAATGCGAGTTGCTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCACATCACACAGTTAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGTTTAAAAACGACAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACCACATCACACAGTTAGTTTTTCTCTTATTTTTTATAGAAAAAAAAATAAAATCTCAAAACTAAACCAAATCTAAACAGATGGTGGAGAAGAAGCATGGTTCGGTCACCGAATCGAACCCCCAGGTATGTTTATAGTTCCAAGAGAGACGAGTGGCATACTGTTACAATAAGCTTTTGTTTTTGCAAATCTATCAAAAAAGTGTCTCCTCATTTGCATACCGTACTCTTGTCGTTTTTAAACCTTTT</canonical_amplicon>
		<polymorphic_amplicon>AACCACATCACACAGTTAGTTTTTCTCTTATTTTTTATAGAAAAAAAAATAAAATCTCAAAACTAWACCAAATCTAAACAGATGGTGGAGAAGAAGCATGGTTCGGTCACCGAATCGAACCCCCAGGTATGTTTATAGTTCCAAGAGAGACGAGTGGCATACTGTTACAATAAGCTTTTGTTTTTGCAAATCTATCAAAAAAGTGTCTCCTCATTTGCATACCGTACTCTTGTCGTTTTTAAACCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10121</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>166457</contig_pos>
        <strand>+</strand>
        <context>ATCACTGCTC[A/G]AAATGTGTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTAAATTATGAGTAAACTTATTTCACTGAAATTTTCCCAATCACTGCTC</left_flank>
        <right_flank>AAATGTGTGATCTCCCTATTTTTGATCATATTCTTTTTTCCTTAATCTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACACTGTGGTTTTTGGAGTTTTGGAAGCCAAAAAGACCAATATCATCAACCACATCACACAGTTAGTTTTTCTCTTATTTTTTATAGAAAAAAAAATAAAATCTCAAAACTAAACCAAATCTAAACAGATGGTGGAGAAGAAGCATGGTTCGGTCACCGAATCGAACCCCCAGGTATGTTTATAGTTCCAAGAGAGACGAGTGGCATACTGTTACAATAAGCTTTTGTTTTTGCAAATCTATCAAAAAAGTGTCTCCTCATTTGCATACCGTACTCTTGTCGTTTTTAAACCTTTTTGTTCATTCAGTAACTTTATATTTTTAACAATAAATTCGGAAGACTATTTATTCCTGAATCTCAAATTTCGCTTGAAACTATCGCCTAATTCGGGTTTCCGTATGATGACTTCCATTTTTTATCACGCTACTCTGAGCACTCACTAAAAATTTGTAAATTATGAGTAAACTTATTTCACTGAAATTTTCCCAATCACTGCTCGAAATGTGTGATCTCCCTATTTTTGATCATATTCTTTTTTCCTTAATCTAACTTCCTCTTTTTCAGAAAGAAGTGCATGAGACGATCTATTCGAACCGAAATGCGAGTTGCTCGTACTACTGGAATCGTTGTGGCTGCTTTTATTGTTTGTTGGATTCCATTCACCACTATCTATGTTCTTCAAGCGTATTCTTTTTGTACTGTAGCTGCTGGATGCATTCCAACTTCACTTTTCACCACTGCTTTCTGGTTGGGATATTCTAATTCGGCAGTCAATCCAATCCTTTACGCTGCCTTCTCCCGCGATTTCAGAATTGCTCTCAAAAGATTATTCTTCCAAAAACCACACTTTTGAAATTTGTCTCTATTTCGTTTTCTACTTTTTCCCCCCAATCATATCATTTGTTTCTAGCTCCGATCTTGTTCCCCACAATGCCAAAACATTAAAAAATAATGCTCGGGTGTTTTCAAACGAGTTCCATAGTTCTTTCAAATCTCAAA</canonical>
            <polymorphic>CACACTGTGGTTTTTGGAGTTTTGGAAGCCAAAAAGACCAATATCATCAACCACATCACACAGTTAGTTTTTCTCTTATTTTTTATAGAAAAAAAAATAAAATCTCAAAACTAAACCAAATCTAAACAGATGGTGGAGAAGAAGCATGGTTCGGTCACCGAATCGAACCCCCAGGTATGTTTATAGTTCCAAGAGAGACGAGTGGCATACTGTTACAATAAGCTTTTGTTTTTGCAAATCTATCAAAAAAGTGTCTCCTCATTTGCATACCGTACTCTTGTCGTTTTTAAACCTTTTTGTTCATTCAGTAACTTTATATTTTTAACAATAAATTCGGAAGACTATTTATTCCTGAATCTCAAATTTCGCTTGAAACTATCGCCTAATTCGGGTTTCCGTATGATGACTTCCATTTTTTATCACGCTACTCTGAGCACTCACTAAAAATTTGTAAATTATGAGTAAACTTATTTCACTGAAATTTTCCCAATCACTGCTCRAAATGTGTGATCTCCCTATTTTTGATCATATTCTTTTTTCCTTAATCTAACTTCCTCTTTTTCAGAAAGAAGTGCATGAGACGATCTATTCGAACCGAAATGCGAGTTGCTCGTACTACTGGAATCGTTGTGGCTGCTTTTATTGTTTGTTGGATTCCATTCACCACTATCTATGTTCTTCAAGCGTATTCTTTTTGTACTGTAGCTGCTGGATGCATTCCAACTTCACTTTTCACCACTGCTTTCTGGTTGGGATATTCTAATTCGGCAGTCAATCCAATCCTTTACGCTGCCTTCTCCCGCGATTTCAGAATTGCTCTCAAAAGATTATTCTTCCAAAAACCACACTTTTGAAATTTGTCTCTATTTCGTTTTCTACTTTTTCCCCCCAATCATATCATTTGTTTCTAGCTCCGATCTTGTTCCCCACAATGCCAAAACATTAAAAAATAATGCTCGGGTGTTTTCAAACGAGTTCCATAGTTCTTTCAAATCTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>409 335 164 92</canonical_bands>
                <polymorphic_bands>427 409 164</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTAACAATAAATTCGGAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTTCTGAAAAAGAGGAAGTTAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTAACAATAAATTCGGAAGACTATTTATTCCTGAATCTCAAATTTCGCTTGAAACTATCGCCTAATTCGGGTTTCCGTATGATGACTTCCATTTTTTATCACGCTACTCTGAGCACTCACTAAAAATTTGTAAATTATGAGTAAACTTATTTCACTGAAATTTTCCCAATCACTGCTCGAAATGTGTGATCTCCCTATTTTTGATCATATTCTTTTTTCCTTAATCTAACTTCCTCTTTTTCAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTAACAATAAATTCGGAAGACTATTTATTCCTGAATCTCAAATTTCGCTTGAAACTATCGCCTAATTCGGGTTTCCGTATGATGACTTCCATTTTTTATCACGCTACTCTGAGCACTCACTAAAAATTTGTAAATTATGAGTAAACTTATTTCACTGAAATTTTCCCAATCACTGCTCRAAATGTGTGATCTCCCTATTTTTGATCATATTCTTTTTTCCTTAATCTAACTTCCTCTTTTTCAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10122</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>168529</contig_pos>
        <strand></strand>
        <context>AAGGTGATGT[A/T]ACGAAAAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTATTCATACTTCCATTTTTTTTTTCGTTTAAATTTAAGCAAGGTGATGT</left_flank>
        <right_flank>ACGAAAAACAAAAGAAGATTATTGATAAGACGCCTGCTAACTCACTTTTA</right_flank>
        <qual_score>47</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCTTCCAAACACTGTGATTATTGGGAAGCCACTCGACGACAAATGAGTCTAATGAGATGTTTTTGACTCGGAAAGTAGGAGCATCCGGAACTGAAAATTCGGGGAATTTAAGGTTTGATTAAAATCAATTCTTGTTTTTCAGAATAGGAAACATGTGACTTGAATTTCAGAGTCTTTTTAGAATTTTGAGGGATTCAGAATACTCACTTCTCGGTGGCCACGTCCTCACAGGTCTCAACGTCGTCGGCCCTTCTCCAGCTCTGGTTTCTGCCCAAACGGTTACTTTATATCCGGTATCAGGTTCACTTTTCTCATGTAGGTAGTATTTTTGTCGATGAATGACGTACGTTTCTTCGGTTTCATCTGAAAATTATTCATCTGGAAAACGATTAGGGAAACGCAGAAGAAATAAAGAAGGTGCAAAAATCAACGAACCGCTACATTCTATTATTCATACTTCCATTTTTTTTTTCGTTTAAATTTAAGCAAGGTGATGTAACGAAAAACAAAAGAAGATTATTGATAAGACGCCTGCTAACTCACTTTTATCATTTTGGAAAGAGATAAAATATCCTCTTATTCTTCCGTTTGGTTGCAAAGGAGCATCCCATTGAAGAAGAATTGCAGTCGATCCAACGGAATAAACACGAAGATTGTGAACTTTTCCAGGGGCTGAAAAACAATGGAGTGTCTTAAATATGATGTAAGATTTCTATTAGAAGGCCCTGATCTTATATTGTTTCAAGATACTTTTGGAGGACCCTACTTATACAGGGGACCTTCAATTAGAGGGGCCCTCCTATTTTTCGCTCATTTGTTTCCGAAAATTTAAATTTTAAAAATCTATGAATTTGTGTTTGAAATTCAAGACAATTCTAACAATTTCACCAAAATTGAGTAAGTTTTTGATTTTTCCCTTCCACTAAATATGGCCCTATTATTAAAGGGACCCTTCTAATACAGGTTTACGGTATGCTTAGAAGAGTTGATAACTCACG</canonical>
            <polymorphic>CATCTTCCAAACACTGTGATTATTGGGAAGCCACTCGACGACAAATGAGTCTAATGAGATGTTTTTGACTCGGAAAGTAGGAGCATCCGGAACTGAAAATTCGGGGAATTTAAGGTTTGATTAAAATCAATTCTTGTTTTTCAGAATAGGAAACATGTGACTTGAATTTCAGAGTCTTTTTAGAATTTTGAGGGATTCAGAATACTCACTTCTCGGTGGCCACGTCCTCACAGGTCTCAACGTCGTCGGCCCTTCTCCAGCTCTGGTTTCTGCCCAAACGGTTACTTTATATCCGGTATCAGGTTCACTTTTCTCATGTAGGTAGTATTTTTGTCGATGAATGACGTACGTTTCTTCGGTTTCATCTGAAAATTATTCATCTGGAAAACGATTAGGGAAACGCAGAAGAAATAAAGAAGGTGCAAAAATCAACGAACCGCTACATTCTATTATTCATACTTCCATTTTTTTTTTCGTTTAAATTTAAGCAAGGTGATGTWACGAAAAACAAAAGAAGATTATTGATAAGACGCCTGCTAACTCACTTTTATCATTTTGGAAAGAGATAAAATATCCTCTTATTCTTCCGTTTGGTTGCAAAGGAGCATCCCATTGAAGAAGAATTGCAGTCGATCCAACGGAATAAACACGAAGATTGTGAACTTTTCCAGGGGCTGAAAAACAATGGAGTGTCTTAAATATGATGTAAGATTTCTATTAGAAGGCCCTGATCTTATATTGTTTCAAGATACTTTTGGAGGACCCTACTTATACAGGGGACCTTCAATTAGAGGGGCCCTCCTATTTTTCGCTCATTTGTTTCCGAAAATTTAAATTTTAAAAATCTATGAATTTGTGTTTGAAATTCAAGACAATTCTAACAATTTCACCAAAATTGAGTAAGTTTTTGATTTTTCCCTTCCACTAAATATGGCCCTATTATTAAAGGGACCCTTCTAATACAGGTTTACGGTATGCTTAGAAGAGTTGATAACTCACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTAGTATTTTTGTCGATGAATG</pcr_primer_p1>
		<pcr_primer_p2>CTCTTTCCAAAATGATAAAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GGTAGTATTTTTGTCGATGAATGACGTACGTTTCTTCGGTTTCATCTGAAAATTATTCATCTGGAAAACGATTAGGGAAACGCAGAAGAAATAAAGAAGGTGCAAAAATCAACGAACCGCTACATTCTATTATTCATACTTCCATTTTTTTTTTCGTTTAAATTTAAGCAAGGTGATGTAACGAAAAACAAAAGAAGATTATTGATAAGACGCCTGCTAACTCACTTTTATCATTTTGGAAAGAG</canonical_amplicon>
		<polymorphic_amplicon>GGTAGTATTTTTGTCGATGAATGACGTACGTTTCTTCGGTTTCATCTGAAAATTATTCATCTGGAAAACGATTAGGGAAACGCAGAAGAAATAAAGAAGGTGCAAAAATCAACGAACCGCTACATTCTATTATTCATACTTCCATTTTTTTTTTCGTTTAAATTTAAGCAAGGTGATGTWACGAAAAACAAAAGAAGATTATTGATAAGACGCCTGCTAACTCACTTTTATCATTTTGGAAAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10123</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>168270</contig_pos>
        <strand>+</strand>
        <context>CAGGTCTCAA[A/C]GTCGTCGGCC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGGGATTCAGAATACTCACTTCTCGGTGGCCACGTCCTCACAGGTCTCAA</left_flank>
        <right_flank>GTCGTCGGCCCTTCTCCAGCTCTGGTTTCTGCCCAAACGGTTACTTTATA</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTGCATAATCTCGATTTAATGTTTTTATTGGAAGGAATACAGATTCACACTGTCTTGGACCATCTTTAGCAATTCCTTGGATGAAATACTTTTGATCTTCTTTTAAATCTGAAAACTGTTTTATTTACAAGCAATACATATCCAAAAAGATGCTCACTTCTCAGTAAGATCTCTGTGTTCGGAAGATAAATGATTTCCGATTGGTGCCACGTGTTAGAACTTTCAGCAGTGTAATTGACGAAGAACGCGGCTCCGGGCATCTTCCAAACACTGTGATTATTGGGAAGCCACTCGACGACAAATGAGTCTAATGAGATGTTTTTGACTCGGAAAGTAGGAGCATCCGGAACTGAAAATTCGGGGAATTTAAGGTTTGATTAAAATCAATTCTTGTTTTTCAGAATAGGAAACATGTGACTTGAATTTCAGAGTCTTTTTAGAATTTTGAGGGATTCAGAATACTCACTTCTCGGTGGCCACGTCCTCACAGGTCTCAACGTCGTCGGCCCTTCTCCAGCTCTGGTTTCTGCCCAAACGGTTACTTTATATCCGGTATCAGGTTCACTTTTCTCATGTAGGTAGTATTTTTGTCGATGAATGACGTACGTTTCTTCGGTTTCATCTGAAAATTATTCATCTGGAAAACGATTAGGGAAACGCAGAAGAAATAAAGAAGGTGCAAAAATCAACGAACCGCTACATTCTATTATTCATACTTCCATTTTTTTTTTCGTTTAAATTTAAGCAAGGTGATGTAACGAAAAACAAAAGAAGATTATTGATAAGACGCCTGCTAACTCACTTTTATCATTTTGGAAAGAGATAAAATATCCTCTTATTCTTCCGTTTGGTTGCAAAGGAGCATCCCATTGAAGAAGAATTGCAGTCGATCCAACGGAATAAACACGAAGATTGTGAACTTTTCCAGGGGCTGAAAAACAATGGAGTGTCTTAAATATGATGTAAGATTTCTATTAGAAGGCCCTGATCTTATATTG</canonical>
            <polymorphic>ATTTGCATAATCTCGATTTAATGTTTTTATTGGAAGGAATACAGATTCACACTGTCTTGGACCATCTTTAGCAATTCCTTGGATGAAATACTTTTGATCTTCTTTTAAATCTGAAAACTGTTTTATTTACAAGCAATACATATCCAAAAAGATGCTCACTTCTCAGTAAGATCTCTGTGTTCGGAAGATAAATGATTTCCGATTGGTGCCACGTGTTAGAACTTTCAGCAGTGTAATTGACGAAGAACGCGGCTCCGGGCATCTTCCAAACACTGTGATTATTGGGAAGCCACTCGACGACAAATGAGTCTAATGAGATGTTTTTGACTCGGAAAGTAGGAGCATCCGGAACTGAAAATTCGGGGAATTTAAGGTTTGATTAAAATCAATTCTTGTTTTTCAGAATAGGAAACATGTGACTTGAATTTCAGAGTCTTTTTAGAATTTTGAGGGATTCAGAATACTCACTTCTCGGTGGCCACGTCCTCACAGGTCTCAAMGTCGTCGGCCCTTCTCCAGCTCTGGTTTCTGCCCAAACGGTTACTTTATATCCGGTATCAGGTTCACTTTTCTCATGTAGGTAGTATTTTTGTCGATGAATGACGTACGTTTCTTCGGTTTCATCTGAAAATTATTCATCTGGAAAACGATTAGGGAAACGCAGAAGAAATAAAGAAGGTGCAAAAATCAACGAACCGCTACATTCTATTATTCATACTTCCATTTTTTTTTTCGTTTAAATTTAAGCAAGGTGATGTAACGAAAAACAAAAGAAGATTATTGATAAGACGCCTGCTAACTCACTTTTATCATTTTGGAAAGAGATAAAATATCCTCTTATTCTTCCGTTTGGTTGCAAAGGAGCATCCCATTGAAGAAGAATTGCAGTCGATCCAACGGAATAAACACGAAGATTGTGAACTTTTCCAGGGGCTGAAAAACAATGGAGTGTCTTAAATATGATGTAAGATTTCTATTAGAAGGCCCTGATCTTATATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>496 299 205</canonical_bands>
                <polymorphic_bands>493 299 208</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>393 270 211 104 18 4</canonical_bands>
                <polymorphic_bands>393 270 211 122 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAATAGGAAACATGTGACTTGA</pcr_primer_p1>
		<pcr_primer_p2>ATCGTTTTCCAGATGAATAATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAATAGGAAACATGTGACTTGAATTTCAGAGTCTTTTTAGAATTTTGAGGGATTCAGAATACTCACTTCTCGGTGGCCACGTCCTCACAGGTCTCAACGTCGTCGGCCCTTCTCCAGCTCTGGTTTCTGCCCAAACGGTTACTTTATATCCGGTATCAGGTTCACTTTTCTCATGTAGGTAGTATTTTTGTCGATGAATGACGTACGTTTCTTCGGTTTCATCTGAAAATTATTCATCTGGAAAACGAT</canonical_amplicon>
		<polymorphic_amplicon>AGAATAGGAAACATGTGACTTGAATTTCAGAGTCTTTTTAGAATTTTGAGGGATTCAGAATACTCACTTCTCGGTGGCCACGTCCTCACAGGTCTCAAMGTCGTCGGCCCTTCTCCAGCTCTGGTTTCTGCCCAAACGGTTACTTTATATCCGGTATCAGGTTCACTTTTCTCATGTAGGTAGTATTTTTGTCGATGAATGACGTACGTTTCTTCGGTTTCATCTGAAAATTATTCATCTGGAAAACGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10126</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>230384</contig_pos>
        <strand>+</strand>
        <context>GAGAGAAATC[A/G]GTGACGATGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATTTGCATGCGAAATGGGTAAAATGAGTGAAATCGGAGGAGAGAAATC</left_flank>
        <right_flank>GTGACGATGGTGGTGGTGATTGACAGTATAATTCGTCATTATGACACGGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCGGAGGTGGAAAAACATCCAATATCGTGAAGTTGCGTTTCTTTTCAAGCTGAAATAATTCCCATTTTGCTTTATTTTGCCCCATACCGGAACCGACAACTTTGAGCTCAATTATCTCGATTCCTATAAGAGATATCAGAATTTTGTCAACTCATAAAATATTGGTAATTTCATGATCAATAATTTATCAGTTGTCAAGTTTCTGATATCTTTTACAGAAACTGAGATAATTGAGCTCAAAGTTGACAACCCGTGTGGGCTTCTATTAGAGGAAATTCGGTATTTCTCATTGGTAATCCCCAGTTACTGTCCCATTTTCTTCAGGTTCCCACACCCCTAGTCTCAGTTGACAAAACCAAAAACTATTTAGCATAATCGTATTACAGTGAAATGTGTCCTTGATGTTAGTCATTTTTGCGGGTTTTTGGCAGTGTCACTGGGTGGCAGTAATTTGCATGCGAAATGGGTAAAATGAGTGAAATCGGAGGAGAGAAATCAGTGACGATGGTGGTGGTGATTGACAGTATAATTCGTCATTATGACACGGAAACCTATTACAATAATCTGTCAGTTTAGCAATTAGGCAGTGAGATTTATGATGCTTCCGTAGAAAGCTGTAGACATGGAAAAGATCTTTTTTTCTATCGAAAAGCCGTCACATAATAGTTTGAGAAGTTCTATAGGGTGGCGTAACCAGCACTAAAGTTTGAACTATCATACAGTTTGAGTAAGCATTGAACTGGGCTCAAATTTAGAGTGCAGAAATTCAGATGATTCACCAGTAAACTGACCAAGTTTCAAATTAATTATACTTATGTCTAGAGGAGGGTTGTTTTTATCAGTTCGGGTAGTTGTGTGCCACCCTGCAGATCAGAAATCTTGCTATTGCAGTTTTTAAATTCTTTGTTTAGTTCATGGCCCTTTTCGAAAAACAGAAAATCCATTTTTTTCACAAGTCATGCGGATCCCCATTCTTCTCTTTTCAAACAATTCGTGAG</canonical>
            <polymorphic>AGCCGGAGGTGGAAAAACATCCAATATCGTGAAGTTGCGTTTCTTTTCAAGCTGAAATAATTCCCATTTTGCTTTATTTTGCCCCATACCGGAACCGACAACTTTGAGCTCAATTATCTCGATTCCTATAAGAGATATCAGAATTTTGTCAACTCATAAAATATTGGTAATTTCATGATCAATAATTTATCAGTTGTCAAGTTTCTGATATCTTTTACAGAAACTGAGATAATTGAGCTCAAAGTTGACAACCCGTGTGGGCTTCTATTAGAGGAAATTCGGTATTTCTCATTGGTAATCCCCAGTTACTGTCCCATTTTCTTCAGGTTCCCACACCCCTAGTCTCAGTTGACAAAACCAAAAACTATTTAGCATAATCGTATTACAGTGAAATGTGTCCTTGATGTTAGTCATTTTTGCGGGTTTTTGGCAGTGTCACTGGGTGGCAGTAATTTGCATGCGAAATGGGTAAAATGAGTGAAATCGGAGGAGAGAAATCRGTGACGATGGTGGTGGTGATTGACAGTATAATTCGTCATTATGACACGGAAACCTATTACAATAATCTGTCAGTTTAGCAATTAGGCAGTGAGATTTATGATGCTTCCGTAGAAAGCTGTAGACATGGAAAAGATCTTTTTTTCTATCGAAAAGCCGTCACATAATAGTTTGAGAAGTTCTATAGGGTGGCGTAACCAGCACTAAAGTTTGAACTATCATACAGTTTGAGTAAGCATTGAACTGGGCTCAAATTTAGAGTGCAGAAATTCAGATGATTCACCAGTAAACTGACCAAGTTTCAAATTAATTATACTTATGTCTAGAGGAGGGTTGTTTTTATCAGTTCGGGTAGTTGTGTGCCACCCTGCAGATCAGAAATCTTGCTATTGCAGTTTTTAAATTCTTTGTTTAGTTCATGGCCCTTTTCGAAAAACAGAAAATCCATTTTTTTCACAAGTCATGCGGATCCCCATTCTTCTCTTTTCAAACAATTCGTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATGTGTCCTTGATGTTAGTC</pcr_primer_p1>
		<pcr_primer_p2>AGATCTTTTCCATGTCTACAGC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAATGTGTCCTTGATGTTAGTCATTTTTGCGGGTTTTTGGCAGTGTCACTGGGTGGCAGTAATTTGCATGCGAAATGGGTAAAATGAGTGAAATCGGAGGAGAGAAATCAGTGACGATGGTGGTGGTGATTGACAGTATAATTCGTCATTATGACACGGAAACCTATTACAATAATCTGTCAGTTTAGCAATTAGGCAGTGAGATTTATGATGCTTCCGTAGAAAGCTGTAGACATGGAAAAGATCT</canonical_amplicon>
		<polymorphic_amplicon>GAAATGTGTCCTTGATGTTAGTCATTTTTGCGGGTTTTTGGCAGTGTCACTGGGTGGCAGTAATTTGCATGCGAAATGGGTAAAATGAGTGAAATCGGAGGAGAGAAATCRGTGACGATGGTGGTGGTGATTGACAGTATAATTCGTCATTATGACACGGAAACCTATTACAATAATCTGTCAGTTTAGCAATTAGGCAGTGAGATTTATGATGCTTCCGTAGAAAGCTGTAGACATGGAAAAGATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10127</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>290637</contig_pos>
        <strand>+</strand>
        <context>TTTCATCTGT[A/G]AACATTTTGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGATAGAGTTTGTTCTGCCATTTGGGTGGCAGCAGCTGGTTTCATCTGT</left_flank>
        <right_flank>AACATTTTGCAGTTTTGTTATGGCATGTATATAAGATACCGGTGTTCGTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGCTGAAAAATGTATCATGGATTCTGATACATGCAATGTGAACACTCACTGCAATCGAAGAGAACAATGAGTTTGACCAAAACAAACTCTTCTTTTGACATTCCAACTTTTTTGACCGGCTCAATGATGTGATTGATGATCCTCTTCATTTCTTGGCAGTAATCATCCATTCTGAAAATGAAAATCCTTTGATTCTCCTTTCTTCATTTCCAAACTTACAGTGGATCATTTCCTCTTGCTGGATCCCAATAGAATCCGGATCCAAAGTGCAACAACTCTTCATCTCCATCTAATGCTCGATTGTAATTCGCGTAGACCACCGAAAAACAAACAACTTTGCAAAGTTGACACACTGCCAACCGAAGTTTATCCTCATCTCCGAGATACTGTAGCTCCGAGATTCCAGCGAGCCATTCGAAGTAATGAGCAACGAGACGGAACCACATTGCAGATAGAGTTTGTTCTGCCATTTGGGTGGCAGCAGCTGGTTTCATCTGTGAACATTTTGCAGTTTTGTTATGGCATGTATATAAGATACCGGTGTTCGTGGAGCAATACTTCTTGGAAAGAACAAAGCCTGGAAAAGATCCAACTCAGCTGAACCTGACATAGACTTTGGGAGTGGTCCGGAAAGATCATCAACTGCATCGCAATACGCTTCCAACCGTAAAAATCGACGAATCACATCACAACAATTTTGGAGAAAGAACGGTGAGAATGTGGACAAACTGTATCCAAATTGGTTTGATGGCTGGAATCAGATATTGGCTGTGTGAAATAAAATGAGAACTTACGAAACGATAACTATTTCCTTGGGAGACTTTGAATGAATGATTAGCAAACGAAGTCATTTTTCCGTCAGTAATTTGCTTCAGTTTGGCTGAAAAACAGAATTTTCAGAGGTGTTTTGAAATATGGGAATGCCTAAAATTCTTAAAATACGTTTGGATAGTTCATCTCTTCTCCTGCTTTCGAGTAACATAAAATCTGAACTAAACT</canonical>
            <polymorphic>TAGCTGAAAAATGTATCATGGATTCTGATACATGCAATGTGAACACTCACTGCAATCGAAGAGAACAATGAGTTTGACCAAAACAAACTCTTCTTTTGACATTCCAACTTTTTTGACCGGCTCAATGATGTGATTGATGATCCTCTTCATTTCTTGGCAGTAATCATCCATTCTGAAAATGAAAATCCTTTGATTCTCCTTTCTTCATTTCCAAACTTACAGTGGATCATTTCCTCTTGCTGGATCCCAATAGAATCCGGATCCAAAGTGCAACAACTCTTCATCTCCATCTAATGCTCGATTGTAATTCGCGTAGACCACCGAAAAACAAACAACTTTGCAAAGTTGACACACTGCCAACCGAAGTTTATCCTCATCTCCGAGATACTGTAGCTCCGAGATTCCAGCGAGCCATTCGAAGTAATGAGCAACGAGACGGAACCACATTGCAGATAGAGTTTGTTCTGCCATTTGGGTGGCAGCAGCTGGTTTCATCTGTRAACATTTTGCAGTTTTGTTATGGCATGTATATAAGATACCGGTGTTCGTGGAGCAATACTTCTTGGAAAGAACAAAGCCTGGAAAAGATCCAACTCAGCTGAACCTGACATAGACTTTGGGAGTGGTCCGGAAAGATCATCAACTGCATCGCAATACGCTTCCAACCGTAAAAATCGACGAATCACATCACAACAATTTTGGAGAAAGAACGGTGAGAATGTGGACAAACTGTATCCAAATTGGTTTGATGGCTGGAATCAGATATTGGCTGTGTGAAATAAAATGAGAACTTACGAAACGATAACTATTTCCTTGGGAGACTTTGAATGAATGATTAGCAAACGAAGTCATTTTTCCGTCAGTAATTTGCTTCAGTTTGGCTGAAAAACAGAATTTTCAGAGGTGTTTTGAAATATGGGAATGCCTAAAATTCTTAAAATACGTTTGGATAGTTCATCTCTTCTCCTGCTTTCGAGTAACATAAAATCTGAACTAAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>130 94 92 91 83 75 60 51 50 46 44 41 34 31 25 22 8 6 5 4 4 2 2</canonical_bands>
                <polymorphic_bands>130 94 92 91 83 75 66 60 51 50 46 41 34 31 25 8 6 5 4 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATTGCAGATAGAGTTTGTTCT</pcr_primer_p1>
		<pcr_primer_p2>GATGTGATTCGTCGATTTTTAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACATTGCAGATAGAGTTTGTTCTGCCATTTGGGTGGCAGCAGCTGGTTTCATCTGTGAACATTTTGCAGTTTTGTTATGGCATGTATATAAGATACCGGTGTTCGTGGAGCAATACTTCTTGGAAAGAACAAAGCCTGGAAAAGATCCAACTCAGCTGAACCTGACATAGACTTTGGGAGTGGTCCGGAAAGATCATCAACTGCATCGCAATACGCTTCCAACCGTAAAAATCGACGAATCACATC</canonical_amplicon>
		<polymorphic_amplicon>ACATTGCAGATAGAGTTTGTTCTGCCATTTGGGTGGCAGCAGCTGGTTTCATCTGTRAACATTTTGCAGTTTTGTTATGGCATGTATATAAGATACCGGTGTTCGTGGAGCAATACTTCTTGGAAAGAACAAAGCCTGGAAAAGATCCAACTCAGCTGAACCTGACATAGACTTTGGGAGTGGTCCGGAAAGATCATCAACTGCATCGCAATACGCTTCCAACCGTAAAAATCGACGAATCACATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10128</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>290902</contig_pos>
        <strand>+</strand>
        <context>GGAATCAGAT[A/T]TTGGCTGTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGAATGTGGACAAACTGTATCCAAATTGGTTTGATGGCTGGAATCAGAT</left_flank>
        <right_flank>TTGGCTGTGTGAAATAAAATGAGAACTTACGAAACGATAACTATTTCCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTGCAACAACTCTTCATCTCCATCTAATGCTCGATTGTAATTCGCGTAGACCACCGAAAAACAAACAACTTTGCAAAGTTGACACACTGCCAACCGAAGTTTATCCTCATCTCCGAGATACTGTAGCTCCGAGATTCCAGCGAGCCATTCGAAGTAATGAGCAACGAGACGGAACCACATTGCAGATAGAGTTTGTTCTGCCATTTGGGTGGCAGCAGCTGGTTTCATCTGTGAACATTTTGCAGTTTTGTTATGGCATGTATATAAGATACCGGTGTTCGTGGAGCAATACTTCTTGGAAAGAACAAAGCCTGGAAAAGATCCAACTCAGCTGAACCTGACATAGACTTTGGGAGTGGTCCGGAAAGATCATCAACTGCATCGCAATACGCTTCCAACCGTAAAAATCGACGAATCACATCACAACAATTTTGGAGAAAGAACGGTGAGAATGTGGACAAACTGTATCCAAATTGGTTTGATGGCTGGAATCAGATATTGGCTGTGTGAAATAAAATGAGAACTTACGAAACGATAACTATTTCCTTGGGAGACTTTGAATGAATGATTAGCAAACGAAGTCATTTTTCCGTCAGTAATTTGCTTCAGTTTGGCTGAAAAACAGAATTTTCAGAGGTGTTTTGAAATATGGGAATGCCTAAAATTCTTAAAATACGTTTGGATAGTTCATCTCTTCTCCTGCTTTCGAGTAACATAAAATCTGAACTAAACTTGTACCTTATTTTCCGAACTTTTGATTTTTTGTAGTTCTATTATAACTCTTACAAAACTGAAAGTAGAAGGGCCCTCACACTTTCAAGTTTGAGCTCAATTATCTCAATTCCTGTGCAAGATATCAAAAAGTGGTTAACTAACAAAACATTTCTGATATTATGATACAAAATTTTTCAGTTGACAACTTATTCATATCTTTGAAAGGAACCGAGATAAATGTGTTAAAAGTTGAAAGTTAGGGGTCTTTTTATTACAGGTTTCGT</canonical>
            <polymorphic>AAGTGCAACAACTCTTCATCTCCATCTAATGCTCGATTGTAATTCGCGTAGACCACCGAAAAACAAACAACTTTGCAAAGTTGACACACTGCCAACCGAAGTTTATCCTCATCTCCGAGATACTGTAGCTCCGAGATTCCAGCGAGCCATTCGAAGTAATGAGCAACGAGACGGAACCACATTGCAGATAGAGTTTGTTCTGCCATTTGGGTGGCAGCAGCTGGTTTCATCTGTGAACATTTTGCAGTTTTGTTATGGCATGTATATAAGATACCGGTGTTCGTGGAGCAATACTTCTTGGAAAGAACAAAGCCTGGAAAAGATCCAACTCAGCTGAACCTGACATAGACTTTGGGAGTGGTCCGGAAAGATCATCAACTGCATCGCAATACGCTTCCAACCGTAAAAATCGACGAATCACATCACAACAATTTTGGAGAAAGAACGGTGAGAATGTGGACAAACTGTATCCAAATTGGTTTGATGGCTGGAATCAGATWTTGGCTGTGTGAAATAAAATGAGAACTTACGAAACGATAACTATTTCCTTGGGAGACTTTGAATGAATGATTAGCAAACGAAGTCATTTTTCCGTCAGTAATTTGCTTCAGTTTGGCTGAAAAACAGAATTTTCAGAGGTGTTTTGAAATATGGGAATGCCTAAAATTCTTAAAATACGTTTGGATAGTTCATCTCTTCTCCTGCTTTCGAGTAACATAAAATCTGAACTAAACTTGTACCTTATTTTCCGAACTTTTGATTTTTTGTAGTTCTATTATAACTCTTACAAAACTGAAAGTAGAAGGGCCCTCACACTTTCAAGTTTGAGCTCAATTATCTCAATTCCTGTGCAAGATATCAAAAAGTGGTTAACTAACAAAACATTTCTGATATTATGATACAAAATTTTTCAGTTGACAACTTATTCATATCTTTGAAAGGAACCGAGATAAATGTGTTAAAAGTTGAAAGTTAGGGGTCTTTTTATTACAGGTTTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGAGAATGTGGACAAACTGTAT</pcr_primer_p1>
		<pcr_primer_p2>AAGAGATGAACTATCCAAACGTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTGAGAATGTGGACAAACTGTATCCAAATTGGTTTGATGGCTGGAATCAGATATTGGCTGTGTGAAATAAAATGAGAACTTACGAAACGATAACTATTTCCTTGGGAGACTTTGAATGAATGATTAGCAAACGAAGTCATTTTTCCGTCAGTAATTTGCTTCAGTTTGGCTGAAAAACAGAATTTTCAGAGGTGTTTTGAAATATGGGAATGCCTAAAATTCTTAAAATACGTTTGGATAGTTCATCTCTT</canonical_amplicon>
		<polymorphic_amplicon>GTGAGAATGTGGACAAACTGTATCCAAATTGGTTTGATGGCTGGAATCAGATWTTGGCTGTGTGAAATAAAATGAGAACTTACGAAACGATAACTATTTCCTTGGGAGACTTTGAATGAATGATTAGCAAACGAAGTCATTTTTCCGTCAGTAATTTGCTTCAGTTTGGCTGAAAAACAGAATTTTCAGAGGTGTTTTGAAATATGGGAATGCCTAAAATTCTTAAAATACGTTTGGATAGTTCATCTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10129</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>292631</contig_pos>
        <strand>+</strand>
        <context>ATTCACGAAG[G/T]CTCACACAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACAAGAAATTTATTGAAGCATACAAAAAATCAATAAACAAATTCACGAAG</left_flank>
        <right_flank>CTCACACAGTGGATGATCACACCGTGGATGATCTGTTAAATATCTCCATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCTTCGAATTATTCAAAAATTTCATGGCAAATCTGGCTTTTGACTCATCGGGTTAGCCTAAAAAAACCAAGAAACCACAGAAAAGTTTGAATACTTCGTTCTCCGAATCGAGCAGAAGAAAGCTAACAAAACCAGTTTTCGGTTCCGAATGATTAATATGAGCTAGCTGTCAAGAATGCCTTATGATCATTCTGGGAATCTTATGGTACTCAGAACCGGCAGATGATATCTATGGTAGATACATATGGGTTAAATCTCAGAAATTACTGACATCTAATGCTTCAGACAACTAATTTGAGTATGAGCTTCCTAAGGCTAGGGAGAATTTTTGTACTTAAGTCAACAGCTACCGTGTCTAGCATTATTTCGTTAAAAAACGGTGACAGTCAACGGCCCGCCCGCATAGCCAAGGCATAACTATACTACCGAAAGTAGAATCAGCTATCGACAAGAAATTTATTGAAGCATACAAAAAATCAATAAACAAATTCACGAAGTCTCACACAGTGGATGATCACACCGTGGATGATCTGTTAAATATCTCCATCAACGTCGCTCAGATTACTGAACAACCAGGATACAAATAAGGCTACATTAGAAAATCAGAGAATAAATGATACATCGGGTACAAAATGTGTGAGCTTATATACACCCGTAAACCAACAAGTCATGTCCAAGGTGCAAGATTTGTACTCATTATCTGAGCGAACATTTTCTGGGAGAAGACCTTGGTGTTTTCCAAAAAATCAAATAATAATTGTAGACTGGATACAAAATTTGCAGGAAATAATTGTCTGCATGAATAATTTGCAGTGGTTGATTCCCACCATCTGCCGGTTTTGCTACTAACAAGAAAGCGAAGAATCGAGATGAAAAACAAAAAATGAGAGCCGAATAAATAGAAAGCAAGGTGTTCTAGAAAAAAGGATTTAAATGAATATTGGACATTGGAACAAGTTATCGACACATTTATGAACTTAGTAACACATACCGTAAAG</canonical>
            <polymorphic>CAGCTTCGAATTATTCAAAAATTTCATGGCAAATCTGGCTTTTGACTCATCGGGTTAGCCTAAAAAAACCAAGAAACCACAGAAAAGTTTGAATACTTCGTTCTCCGAATCGAGCAGAAGAAAGCTAACAAAACCAGTTTTCGGTTCCGAATGATTAATATGAGCTAGCTGTCAAGAATGCCTTATGATCATTCTGGGAATCTTATGGTACTCAGAACCGGCAGATGATATCTATGGTAGATACATATGGGTTAAATCTCAGAAATTACTGACATCTAATGCTTCAGACAACTAATTTGAGTATGAGCTTCCTAAGGCTAGGGAGAATTTTTGTACTTAAGTCAACAGCTACCGTGTCTAGCATTATTTCGTTAAAAAACGGTGACAGTCAACGGCCCGCCCGCATAGCCAAGGCATAACTATACTACCGAAAGTAGAATCAGCTATCGACAAGAAATTTATTGAAGCATACAAAAAATCAATAAACAAATTCACGAAGKCTCACACAGTGGATGATCACACCGTGGATGATCTGTTAAATATCTCCATCAACGTCGCTCAGATTACTGAACAACCAGGATACAAATAAGGCTACATTAGAAAATCAGAGAATAAATGATACATCGGGTACAAAATGTGTGAGCTTATATACACCCGTAAACCAACAAGTCATGTCCAAGGTGCAAGATTTGTACTCATTATCTGAGCGAACATTTTCTGGGAGAAGACCTTGGTGTTTTCCAAAAAATCAAATAATAATTGTAGACTGGATACAAAATTTGCAGGAAATAATTGTCTGCATGAATAATTTGCAGTGGTTGATTCCCACCATCTGCCGGTTTTGCTACTAACAAGAAAGCGAAGAATCGAGATGAAAAACAAAAAATGAGAGCCGAATAAATAGAAAGCAAGGTGTTCTAGAAAAAAGGATTTAAATGAATATTGGACATTGGAACAAGTTATCGACACATTTATGAACTTAGTAACACATACCGTAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCCAAGGCATAACTATACTACC</pcr_primer_p1>
		<pcr_primer_p2>GGGTGTATATAAGCTCACACATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCCAAGGCATAACTATACTACCGAAAGTAGAATCAGCTATCGACAAGAAATTTATTGAAGCATACAAAAAATCAATAAACAAATTCACGAAGTCTCACACAGTGGATGATCACACCGTGGATGATCTGTTAAATATCTCCATCAACGTCGCTCAGATTACTGAACAACCAGGATACAAATAAGGCTACATTAGAAAATCAGAGAATAAATGATACATCGGGTACAAAATGTGTGAGCTTATATACACCC</canonical_amplicon>
		<polymorphic_amplicon>AGCCAAGGCATAACTATACTACCGAAAGTAGAATCAGCTATCGACAAGAAATTTATTGAAGCATACAAAAAATCAATAAACAAATTCACGAAGKCTCACACAGTGGATGATCACACCGTGGATGATCTGTTAAATATCTCCATCAACGTCGCTCAGATTACTGAACAACCAGGATACAAATAAGGCTACATTAGAAAATCAGAGAATAAATGATACATCGGGTACAAAATGTGTGAGCTTATATACACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10130</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>292612</contig_pos>
        <strand>+</strand>
        <context>ACAAAAAATC[A/C]ATAAACAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAGTAGAATCAGCTATCGACAAGAAATTTATTGAAGCATACAAAAAATC</left_flank>
        <right_flank>ATAAACAAATTCACGAAGTCTCACACAGTGGATGATCACACCGTGGATGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTTAAAAAAGTAATACTCAGCTTCGAATTATTCAAAAATTTCATGGCAAATCTGGCTTTTGACTCATCGGGTTAGCCTAAAAAAACCAAGAAACCACAGAAAAGTTTGAATACTTCGTTCTCCGAATCGAGCAGAAGAAAGCTAACAAAACCAGTTTTCGGTTCCGAATGATTAATATGAGCTAGCTGTCAAGAATGCCTTATGATCATTCTGGGAATCTTATGGTACTCAGAACCGGCAGATGATATCTATGGTAGATACATATGGGTTAAATCTCAGAAATTACTGACATCTAATGCTTCAGACAACTAATTTGAGTATGAGCTTCCTAAGGCTAGGGAGAATTTTTGTACTTAAGTCAACAGCTACCGTGTCTAGCATTATTTCGTTAAAAAACGGTGACAGTCAACGGCCCGCCCGCATAGCCAAGGCATAACTATACTACCGAAAGTAGAATCAGCTATCGACAAGAAATTTATTGAAGCATACAAAAAATCAATAAACAAATTCACGAAGTCTCACACAGTGGATGATCACACCGTGGATGATCTGTTAAATATCTCCATCAACGTCGCTCAGATTACTGAACAACCAGGATACAAATAAGGCTACATTAGAAAATCAGAGAATAAATGATACATCGGGTACAAAATGTGTGAGCTTATATACACCCGTAAACCAACAAGTCATGTCCAAGGTGCAAGATTTGTACTCATTATCTGAGCGAACATTTTCTGGGAGAAGACCTTGGTGTTTTCCAAAAAATCAAATAATAATTGTAGACTGGATACAAAATTTGCAGGAAATAATTGTCTGCATGAATAATTTGCAGTGGTTGATTCCCACCATCTGCCGGTTTTGCTACTAACAAGAAAGCGAAGAATCGAGATGAAAAACAAAAAATGAGAGCCGAATAAATAGAAAGCAAGGTGTTCTAGAAAAAAGGATTTAAATGAATATTGGACATTGGAACAAGTTATCGACACATTTATGAACTT</canonical>
            <polymorphic>GTGTTAAAAAAGTAATACTCAGCTTCGAATTATTCAAAAATTTCATGGCAAATCTGGCTTTTGACTCATCGGGTTAGCCTAAAAAAACCAAGAAACCACAGAAAAGTTTGAATACTTCGTTCTCCGAATCGAGCAGAAGAAAGCTAACAAAACCAGTTTTCGGTTCCGAATGATTAATATGAGCTAGCTGTCAAGAATGCCTTATGATCATTCTGGGAATCTTATGGTACTCAGAACCGGCAGATGATATCTATGGTAGATACATATGGGTTAAATCTCAGAAATTACTGACATCTAATGCTTCAGACAACTAATTTGAGTATGAGCTTCCTAAGGCTAGGGAGAATTTTTGTACTTAAGTCAACAGCTACCGTGTCTAGCATTATTTCGTTAAAAAACGGTGACAGTCAACGGCCCGCCCGCATAGCCAAGGCATAACTATACTACCGAAAGTAGAATCAGCTATCGACAAGAAATTTATTGAAGCATACAAAAAATCMATAAACAAATTCACGAAGTCTCACACAGTGGATGATCACACCGTGGATGATCTGTTAAATATCTCCATCAACGTCGCTCAGATTACTGAACAACCAGGATACAAATAAGGCTACATTAGAAAATCAGAGAATAAATGATACATCGGGTACAAAATGTGTGAGCTTATATACACCCGTAAACCAACAAGTCATGTCCAAGGTGCAAGATTTGTACTCATTATCTGAGCGAACATTTTCTGGGAGAAGACCTTGGTGTTTTCCAAAAAATCAAATAATAATTGTAGACTGGATACAAAATTTGCAGGAAATAATTGTCTGCATGAATAATTTGCAGTGGTTGATTCCCACCATCTGCCGGTTTTGCTACTAACAAGAAAGCGAAGAATCGAGATGAAAAACAAAAAATGAGAGCCGAATAAATAGAAAGCAAGGTGTTCTAGAAAAAAGGATTTAAATGAATATTGGACATTGGAACAAGTTATCGACACATTTATGAACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCCAAGGCATAACTATACTACC</pcr_primer_p1>
		<pcr_primer_p2>GGGTGTATATAAGCTCACACATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCCAAGGCATAACTATACTACCGAAAGTAGAATCAGCTATCGACAAGAAATTTATTGAAGCATACAAAAAATCAATAAACAAATTCACGAAGTCTCACACAGTGGATGATCACACCGTGGATGATCTGTTAAATATCTCCATCAACGTCGCTCAGATTACTGAACAACCAGGATACAAATAAGGCTACATTAGAAAATCAGAGAATAAATGATACATCGGGTACAAAATGTGTGAGCTTATATACACCC</canonical_amplicon>
		<polymorphic_amplicon>AGCCAAGGCATAACTATACTACCGAAAGTAGAATCAGCTATCGACAAGAAATTTATTGAAGCATACAAAAAATCMATAAACAAATTCACGAAGTCTCACACAGTGGATGATCACACCGTGGATGATCTGTTAAATATCTCCATCAACGTCGCTCAGATTACTGAACAACCAGGATACAAATAAGGCTACATTAGAAAATCAGAGAATAAATGATACATCGGGTACAAAATGTGTGAGCTTATATACACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10131</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>307144</contig_pos>
        <strand>+</strand>
        <context>TTAGGCACTG[A/G]GTTGAAGAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTTTCGTCTGGGGGATCTTATTTTCCTAATAAACATATTAGGCACTG</left_flank>
        <right_flank>GTTGAAGAGTCATCAGGAAAAAGATTGTGAGAAGTGGAGGATTAGAAACT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGATAATTATCATTAACACCGGAAGGAAAACTTCCACTAATCCCTGTCCTTTCAATTCCTCATGATGAGCAACATTTACCTTGGTCAAGAAAGTGGCGGTCGATGTGGAGAGAGCTTGTCCTTCCAGCTGATAGAATGGAGTCAAATCGTTCAGATCCTTGATGCCTTCTTCTGCAGCGAACATGGCGAATCCTTTTTTGATCAGCTAAAAAGATAAGGGGTTTTTTTAAAGAAAGAGATGAAATTTTGATTCCTACACTGTCACAGTCAATGCGAGAATGTGTGAAGGCGATTTCCGGATTCCTCTCAAGAATGGTAGCGATGATCGACAGCAACTGAAACCGAGAATCAATAATTTCTAATTTTCAGACATTTAAGGTTGTTTTGACAATCTCATGATTACGAACATGAAATTTTCTCATACCTGATTCATTCCGTGTCGTCACTGATTTTTTCGTCTGGGGGATCTTATTTTCCTAATAAACATATTAGGCACTGAGTTGAAGAGTCATCAGGAAAAAGATTGTGAGAAGTGGAGGATTAGAAACTATTTTTCACTTGTGTTTTCAGAGTGTTTTTTCGCTTATTATCCCTTCCGATGAGCTCGCTATCCCCCCAAGGAGCTCAGTTACGTAGTCAAATCGTCGTCTAATCGTTAATATGTGGTGGGATGCGGGAATCGCATTGCAAGACACACATGTTCAGGGATCTACAGAACTATGGAATGCTTCTGATAATGGAATCAACACTCTTCAAGCTTTTCAAGCCTACTTTGTATTGCCTTTTGATCCGATAAAATCCAAACTTTAAGAAAGAAGATAGATCAAACTTCAAGACTAACTTCAAAAGATATTTGTTTGAAATAATGTTGTTTCCACCGGAAATTCGAATCAGATCACGAGAAATGGGTCAGATGAGACGATTTGTATGCCAAAACAACTGGTCAATGGGAAAGGAACCTTTTCAAAAAACCAACCTCTACGAGCAACTGTCTATATT</canonical>
            <polymorphic>TTGATAATTATCATTAACACCGGAAGGAAAACTTCCACTAATCCCTGTCCTTTCAATTCCTCATGATGAGCAACATTTACCTTGGTCAAGAAAGTGGCGGTCGATGTGGAGAGAGCTTGTCCTTCCAGCTGATAGAATGGAGTCAAATCGTTCAGATCCTTGATGCCTTCTTCTGCAGCGAACATGGCGAATCCTTTTTTGATCAGCTAAAAAGATAAGGGGTTTTTTTAAAGAAAGAGATGAAATTTTGATTCCTACACTGTCACAGTCAATGCGAGAATGTGTGAAGGCGATTTCCGGATTCCTCTCAAGAATGGTAGCGATGATCGACAGCAACTGAAACCGAGAATCAATAATTTCTAATTTTCAGACATTTAAGGTTGTTTTGACAATCTCATGATTACGAACATGAAATTTTCTCATACCTGATTCATTCCGTGTCGTCACTGATTTTTTCGTCTGGGGGATCTTATTTTCCTAATAAACATATTAGGCACTGRGTTGAAGAGTCATCAGGAAAAAGATTGTGAGAAGTGGAGGATTAGAAACTATTTTTCACTTGTGTTTTCAGAGTGTTTTTTCGCTTATTATCCCTTCCGATGAGCTCGCTATCCCCCCAAGGAGCTCAGTTACGTAGTCAAATCGTCGTCTAATCGTTAATATGTGGTGGGATGCGGGAATCGCATTGCAAGACACACATGTTCAGGGATCTACAGAACTATGGAATGCTTCTGATAATGGAATCAACACTCTTCAAGCTTTTCAAGCCTACTTTGTATTGCCTTTTGATCCGATAAAATCCAAACTTTAAGAAAGAAGATAGATCAAACTTCAAGACTAACTTCAAAAGATATTTGTTTGAAATAATGTTGTTTCCACCGGAAATTCGAATCAGATCACGAGAAATGGGTCAGATGAGACGATTTGTATGCCAAAACAACTGGTCAATGGGAAAGGAACCTTTTCAAAAAACCAACCTCTACGAGCAACTGTCTATATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>497 375 128</canonical_bands>
                <polymorphic_bands>625 375</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTACGAACATGAAATTTTCTC</pcr_primer_p1>
		<pcr_primer_p2>GACGATTTGACTACGTAACTGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATTACGAACATGAAATTTTCTCATACCTGATTCATTCCGTGTCGTCACTGATTTTTTCGTCTGGGGGATCTTATTTTCCTAATAAACATATTAGGCACTGAGTTGAAGAGTCATCAGGAAAAAGATTGTGAGAAGTGGAGGATTAGAAACTATTTTTCACTTGTGTTTTCAGAGTGTTTTTTCGCTTATTATCCCTTCCGATGAGCTCGCTATCCCCCCAAGGAGCTCAGTTACGTAGTCAAATCGTC</canonical_amplicon>
		<polymorphic_amplicon>GATTACGAACATGAAATTTTCTCATACCTGATTCATTCCGTGTCGTCACTGATTTTTTCGTCTGGGGGATCTTATTTTCCTAATAAACATATTAGGCACTGRGTTGAAGAGTCATCAGGAAAAAGATTGTGAGAAGTGGAGGATTAGAAACTATTTTTCACTTGTGTTTTCAGAGTGTTTTTTCGCTTATTATCCCTTCCGATGAGCTCGCTATCCCCCCAAGGAGCTCAGTTACGTAGTCAAATCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10132</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>404447</contig_pos>
        <strand></strand>
        <context>TTTCGAAACT[T/A]GAAGTGCAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGAATTGAATTTTTTTTGTTACCTCATTTTTATTACCGATTTTCGAAACT</left_flank>
        <right_flank>GAAGTGCAACAAACAACTGTTTACGAGCGTTCTAAATTCTTTTAATAGCT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTATGTATTCGAAACGTACGCGTGATGACCTAAAAACGCAAAAATTGAAAAAATAAATCCATTCCTACGGAAATTCTAGTCTTCCGTTTTTGGACATTTATTTGGAAAACGGAAGACAACAGACGGAAATAAAAGTTTTTTCTTCAGAAGGCATAGAACGGAAGACGGAACGAAAAAAACCACGGAAGACGGAAAGCGGAAGACTGAATTTCGCTCAAAATTGAGAGCTACTGAAAACGAGTACAACGAAGAAGTCAGAATTAGAAGAGGAAAAACAAATGTCGATGACAAACGCGCGCACAAAAATAGAAATAGTGGATTCCCAAAAAAAAACAATCAAGTTCACGAAGTCTTTTCAACTGCCATAGAACCGATCACGAATGCTCCTTGAGCATATTGACTTGTTGCTCCAGGACATCCGAAAGCTGAAATTTCGAAAATAACTTTTGAATTGAATTTTTTTTGTTACCTCATTTTTATTACCGATTTTCGAAACTTGAAGTGCAACAAACAACTGTTTACGAGCGTTCTAAATTCTTTTAATAGCTAATTTTTCAGAACTTGTGAACTTCTGTTAAAATTTATTGAAAACTGGAATTTTAGAGTTATAAGGAGGGAAAAAATAACAATATATCTCAATTTTGGTGGTCGGAAAAAAAAGATTCAAATATTGGCATTTTAACATTTTCATTCATTAATTTTAAAAAATTCGTGCTAGAAAATGTTCCTAGATTTTTACTCAGGAAATATGCTTTTTTTTGGGAAAACGGAAAAAGGTCTGTTAATTTTTAAACTTTGCTAATATCCTCACCTTTAATTCTGCTCTGCTATCTCGATCCTTTGAAGTCACCGATCCTGGAAGTTGTCGTCGACGTCCTATGTCTTATGAAACGGGGGCTTCGCAATACTGGAAAATCCTGGAACTTGAACGTTGCAACGAAGTACTGATTCTTTCTGAATTCTTTTGGATCCTAGACTTGCCCTCATTTTGGAAAGGT</canonical>
            <polymorphic>AATTATGTATTCGAAACGTACGCGTGATGACCTAAAAACGCAAAAATTGAAAAAATAAATCCATTCCTACGGAAATTCTAGTCTTCCGTTTTTGGACATTTATTTGGAAAACGGAAGACAACAGACGGAAATAAAAGTTTTTTCTTCAGAAGGCATAGAACGGAAGACGGAACGAAAAAAACCACGGAAGACGGAAAGCGGAAGACTGAATTTCGCTCAAAATTGAGAGCTACTGAAAACGAGTACAACGAAGAAGTCAGAATTAGAAGAGGAAAAACAAATGTCGATGACAAACGCGCGCACAAAAATAGAAATAGTGGATTCCCAAAAAAAAACAATCAAGTTCACGAAGTCTTTTCAACTGCCATAGAACCGATCACGAATGCTCCTTGAGCATATTGACTTGTTGCTCCAGGACATCCGAAAGCTGAAATTTCGAAAATAACTTTTGAATTGAATTTTTTTTGTTACCTCATTTTTATTACCGATTTTCGAAACTWGAAGTGCAACAAACAACTGTTTACGAGCGTTCTAAATTCTTTTAATAGCTAATTTTTCAGAACTTGTGAACTTCTGTTAAAATTTATTGAAAACTGGAATTTTAGAGTTATAAGGAGGGAAAAAATAACAATATATCTCAATTTTGGTGGTCGGAAAAAAAAGATTCAAATATTGGCATTTTAACATTTTCATTCATTAATTTTAAAAAATTCGTGCTAGAAAATGTTCCTAGATTTTTACTCAGGAAATATGCTTTTTTTTGGGAAAACGGAAAAAGGTCTGTTAATTTTTAAACTTTGCTAATATCCTCACCTTTAATTCTGCTCTGCTATCTCGATCCTTTGAAGTCACCGATCCTGGAAGTTGTCGTCGACGTCCTATGTCTTATGAAACGGGGGCTTCGCAATACTGGAAAATCCTGGAACTTGAACGTTGCAACGAAGTACTGATTCTTTCTGAATTCTTTTGGATCCTAGACTTGCCCTCATTTTGGAAAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTCTTTTCAACTGCCATAG</pcr_primer_p1>
		<pcr_primer_p2>CCAGTTTTCAATAAATTTTAACAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAGTCTTTTCAACTGCCATAGAACCGATCACGAATGCTCCTTGAGCATATTGACTTGTTGCTCCAGGACATCCGAAAGCTGAAATTTCGAAAATAACTTTTGAATTGAATTTTTTTTGTTACCTCATTTTTATTACCGATTTTCGAAACTTGAAGTGCAACAAACAACTGTTTACGAGCGTTCTAAATTCTTTTAATAGCTAATTTTTCAGAACTTGTGAACTTCTGTTAAAATTTATTGAAAACTGG</canonical_amplicon>
		<polymorphic_amplicon>GAAGTCTTTTCAACTGCCATAGAACCGATCACGAATGCTCCTTGAGCATATTGACTTGTTGCTCCAGGACATCCGAAAGCTGAAATTTCGAAAATAACTTTTGAATTGAATTTTTTTTGTTACCTCATTTTTATTACCGATTTTCGAAACTWGAAGTGCAACAAACAACTGTTTACGAGCGTTCTAAATTCTTTTAATAGCTAATTTTTCAGAACTTGTGAACTTCTGTTAAAATTTATTGAAAACTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10133</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>404514</contig_pos>
        <strand>+</strand>
        <context>TCAGAACTTG[C/T]GAACTTCTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGTTTACGAGCGTTCTAAATTCTTTTAATAGCTAATTTTTCAGAACTTG</left_flank>
        <right_flank>GAACTTCTGTTAAAATTTATTGAAAACTGGAATTTTAGAGTTATAAGGAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACGGAAATTCTAGTCTTCCGTTTTTGGACATTTATTTGGAAAACGGAAGACAACAGACGGAAATAAAAGTTTTTTCTTCAGAAGGCATAGAACGGAAGACGGAACGAAAAAAACCACGGAAGACGGAAAGCGGAAGACTGAATTTCGCTCAAAATTGAGAGCTACTGAAAACGAGTACAACGAAGAAGTCAGAATTAGAAGAGGAAAAACAAATGTCGATGACAAACGCGCGCACAAAAATAGAAATAGTGGATTCCCAAAAAAAAACAATCAAGTTCACGAAGTCTTTTCAACTGCCATAGAACCGATCACGAATGCTCCTTGAGCATATTGACTTGTTGCTCCAGGACATCCGAAAGCTGAAATTTCGAAAATAACTTTTGAATTGAATTTTTTTTGTTACCTCATTTTTATTACCGATTTTCGAAACTTGAAGTGCAACAAACAACTGTTTACGAGCGTTCTAAATTCTTTTAATAGCTAATTTTTCAGAACTTGTGAACTTCTGTTAAAATTTATTGAAAACTGGAATTTTAGAGTTATAAGGAGGGAAAAAATAACAATATATCTCAATTTTGGTGGTCGGAAAAAAAAGATTCAAATATTGGCATTTTAACATTTTCATTCATTAATTTTAAAAAATTCGTGCTAGAAAATGTTCCTAGATTTTTACTCAGGAAATATGCTTTTTTTTGGGAAAACGGAAAAAGGTCTGTTAATTTTTAAACTTTGCTAATATCCTCACCTTTAATTCTGCTCTGCTATCTCGATCCTTTGAAGTCACCGATCCTGGAAGTTGTCGTCGACGTCCTATGTCTTATGAAACGGGGGCTTCGCAATACTGGAAAATCCTGGAACTTGAACGTTGCAACGAAGTACTGATTCTTTCTGAATTCTTTTGGATCCTAGACTTGCCCTCATTTTGGAAAGGTCTTCACGGAGGTCATTCATTCTCTACAGTAATCGCTTTCAATTTCAATTTTATTTTTCCTACTGTAA</canonical>
            <polymorphic>TACGGAAATTCTAGTCTTCCGTTTTTGGACATTTATTTGGAAAACGGAAGACAACAGACGGAAATAAAAGTTTTTTCTTCAGAAGGCATAGAACGGAAGACGGAACGAAAAAAACCACGGAAGACGGAAAGCGGAAGACTGAATTTCGCTCAAAATTGAGAGCTACTGAAAACGAGTACAACGAAGAAGTCAGAATTAGAAGAGGAAAAACAAATGTCGATGACAAACGCGCGCACAAAAATAGAAATAGTGGATTCCCAAAAAAAAACAATCAAGTTCACGAAGTCTTTTCAACTGCCATAGAACCGATCACGAATGCTCCTTGAGCATATTGACTTGTTGCTCCAGGACATCCGAAAGCTGAAATTTCGAAAATAACTTTTGAATTGAATTTTTTTTGTTACCTCATTTTTATTACCGATTTTCGAAACTTGAAGTGCAACAAACAACTGTTTACGAGCGTTCTAAATTCTTTTAATAGCTAATTTTTCAGAACTTGYGAACTTCTGTTAAAATTTATTGAAAACTGGAATTTTAGAGTTATAAGGAGGGAAAAAATAACAATATATCTCAATTTTGGTGGTCGGAAAAAAAAGATTCAAATATTGGCATTTTAACATTTTCATTCATTAATTTTAAAAAATTCGTGCTAGAAAATGTTCCTAGATTTTTACTCAGGAAATATGCTTTTTTTTGGGAAAACGGAAAAAGGTCTGTTAATTTTTAAACTTTGCTAATATCCTCACCTTTAATTCTGCTCTGCTATCTCGATCCTTTGAAGTCACCGATCCTGGAAGTTGTCGTCGACGTCCTATGTCTTATGAAACGGGGGCTTCGCAATACTGGAAAATCCTGGAACTTGAACGTTGCAACGAAGTACTGATTCTTTCTGAATTCTTTTGGATCCTAGACTTGCCCTCATTTTGGAAAGGTCTTCACGGAGGTCATTCATTCTCTACAGTAATCGCTTTCAATTTCAATTTTATTTTTCCTACTGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>154 127 118 117 96 81 67 62 62 39 32 28 17</canonical_bands>
                <polymorphic_bands>154 143 127 118 117 96 67 62 39 32 28 17</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>304 278 195 176 47</canonical_bands>
                <polymorphic_bands>351 278 195 176</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCTGAAATTTCGAAAATAACTT</pcr_primer_p1>
		<pcr_primer_p2>AATGCCAATATTTGAATCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>AGCTGAAATTTCGAAAATAACTTTTGAATTGAATTTTTTTTGTTACCTCATTTTTATTACCGATTTTCGAAACTTGAAGTGCAACAAACAACTGTTTACGAGCGTTCTAAATTCTTTTAATAGCTAATTTTTCAGAACTTGTGAACTTCTGTTAAAATTTATTGAAAACTGGAATTTTAGAGTTATAAGGAGGGAAAAAATAACAATATATCTCAATTTTGGTGGTCGGAAAAAAAAGATTCAAATATTGGCATT</canonical_amplicon>
		<polymorphic_amplicon>AGCTGAAATTTCGAAAATAACTTTTGAATTGAATTTTTTTTGTTACCTCATTTTTATTACCGATTTTCGAAACTTGAAGTGCAACAAACAACTGTTTACGAGCGTTCTAAATTCTTTTAATAGCTAATTTTTCAGAACTTGYGAACTTCTGTTAAAATTTATTGAAAACTGGAATTTTAGAGTTATAAGGAGGGAAAAAATAACAATATATCTCAATTTTGGTGGTCGGAAAAAAAAGATTCAAATATTGGCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10134</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>444946</contig_pos>
        <strand>+</strand>
        <context>CTTTTGCCAT[G/T]AGAAAAGTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAACCTTTTGAATTTCATAATTTCCATTTTTAAAAAGAGCCTTTTGCCAT</left_flank>
        <right_flank>AGAAAAGTTCGTCGAGTGGGCGAGCTGTAATTTGCTTAAATTCCAACATT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTATTCCAAGTGAGACAACAAATTTCAGATTACACTGACACGTGTTCGACTAGCTGATCACACTCCACAGCAGCAGTCCGAACGAATCACGACTAATACGGACAAAATCAAGGAGATTATCGACACAGAAAATCAGAAGAAGAAAAAGCGTCTTTCAGCTGGAGCCATGAAGCGTAAAGAACAAGGAAAACATTCCGATGTCATTTTCACACATCAGGATGGAGACAGTAATGCTGTGAAGAAGAAGGTCACGATTCAACAGCTGAATTCGATAATTTTTGGAGAATCGTAAATTGAATTGTAAACGAGTTGTAATTTTTTTTCATTTTGATTCTATTGTGAATACTTATCCTATTTTCTCTTTCCCATGCAAAACTATTTAATAGAGCGATTTTTGCTCATTTTTCATTCATATCATCATTCAAATTCCACTTAACGAATGCAATAAAACCTTTTGAATTTCATAATTTCCATTTTTAAAAAGAGCCTTTTGCCATTAGAAAAGTTCGTCGAGTGGGCGAGCTGTAATTTGCTTAAATTCCAACATTTTCCGAGAAATTTGGGGGATAATGAATGGTGAGGTGACATATTTGAAATTCTAAAATAACAACCTTAAGTCGAGATGTGTAGCATATAATTTATTCTTCTAAACTTCAATTTTTCTTCATTTTCTCTCAATTTCGATGTTGAGATTAGGCCAATTCCTTCTTTTATTCAACCTAATTTCCAATATTTTTTCTTCTGAAAACTGCAATTTTAATGTGCATTATCTAACATCATCAAGTCAATTTCCATCCAATTGTTCTCAGCTGATTGGAAGATTCCGAATCGATCAAAATACTGATCTGACGAGTGATCAACTTGTGAAGCTTTTCGAAAATGTTCAGGAGATTCGAGGAGTCTTACAAATCTGGAATTCCCAGTTGACTTTTGTCAGTTTTACTAAAAACATCAAAAGCATCACCGGAGATCCGTTAGGTAATACAGATCTATAGACA</canonical>
            <polymorphic>GAGTATTCCAAGTGAGACAACAAATTTCAGATTACACTGACACGTGTTCGACTAGCTGATCACACTCCACAGCAGCAGTCCGAACGAATCACGACTAATACGGACAAAATCAAGGAGATTATCGACACAGAAAATCAGAAGAAGAAAAAGCGTCTTTCAGCTGGAGCCATGAAGCGTAAAGAACAAGGAAAACATTCCGATGTCATTTTCACACATCAGGATGGAGACAGTAATGCTGTGAAGAAGAAGGTCACGATTCAACAGCTGAATTCGATAATTTTTGGAGAATCGTAAATTGAATTGTAAACGAGTTGTAATTTTTTTTCATTTTGATTCTATTGTGAATACTTATCCTATTTTCTCTTTCCCATGCAAAACTATTTAATAGAGCGATTTTTGCTCATTTTTCATTCATATCATCATTCAAATTCCACTTAACGAATGCAATAAAACCTTTTGAATTTCATAATTTCCATTTTTAAAAAGAGCCTTTTGCCATKAGAAAAGTTCGTCGAGTGGGCGAGCTGTAATTTGCTTAAATTCCAACATTTTCCGAGAAATTTGGGGGATAATGAATGGTGAGGTGACATATTTGAAATTCTAAAATAACAACCTTAAGTCGAGATGTGTAGCATATAATTTATTCTTCTAAACTTCAATTTTTCTTCATTTTCTCTCAATTTCGATGTTGAGATTAGGCCAATTCCTTCTTTTATTCAACCTAATTTCCAATATTTTTTCTTCTGAAAACTGCAATTTTAATGTGCATTATCTAACATCATCAAGTCAATTTCCATCCAATTGTTCTCAGCTGATTGGAAGATTCCGAATCGATCAAAATACTGATCTGACGAGTGATCAACTTGTGAAGCTTTTCGAAAATGTTCAGGAGATTCGAGGAGTCTTACAAATCTGGAATTCCCAGTTGACTTTTGTCAGTTTTACTAAAAACATCAAAAGCATCACCGGAGATCCGTTAGGTAATACAGATCTATAGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTAACGAATGCAATAAAACCT</pcr_primer_p1>
		<pcr_primer_p2>TGAGAGAAAATGAAGAAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTTAACGAATGCAATAAAACCTTTTGAATTTCATAATTTCCATTTTTAAAAAGAGCCTTTTGCCATTAGAAAAGTTCGTCGAGTGGGCGAGCTGTAATTTGCTTAAATTCCAACATTTTCCGAGAAATTTGGGGGATAATGAATGGTGAGGTGACATATTTGAAATTCTAAAATAACAACCTTAAGTCGAGATGTGTAGCATATAATTTATTCTTCTAAACTTCAATTTTTCTTCATTTTCTCTCA</canonical_amplicon>
		<polymorphic_amplicon>CTTAACGAATGCAATAAAACCTTTTGAATTTCATAATTTCCATTTTTAAAAAGAGCCTTTTGCCATKAGAAAAGTTCGTCGAGTGGGCGAGCTGTAATTTGCTTAAATTCCAACATTTTCCGAGAAATTTGGGGGATAATGAATGGTGAGGTGACATATTTGAAATTCTAAAATAACAACCTTAAGTCGAGATGTGTAGCATATAATTTATTCTTCTAAACTTCAATTTTTCTTCATTTTCTCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10135</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>448949</contig_pos>
        <strand>+</strand>
        <context>AGATTGGAGT[A/G]AAACACAAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGGTCCAAAAATGGTTTGATTTGGGTGCGCCAAATATGGAGATTGGAGT</left_flank>
        <right_flank>AAACACAAGGAGGAAAAGCATTGCTATTGATTCGATTTCAGCACGGAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGCCAACGAAAATCTTACCATCCCCCATAAAGTTCCATCTCGTTTCATTGACAAAGTTCGTGCGATTGGAAGAAAACAAGCGATTGGAGTCAAAGGAACATTGATGTGCGGAGGACGTCCGGTTAGAAATGCTACCGTTAAATTATGGGATAACGATTTCTGTAAGGAACTTTTCAAAAGTCTCATCCAAGAAAATATTAAATTTCAGTTGACCCTGATGACCTGATTGGTGAAGCTCATGTCTACGAGAATGGTACTTTCCAAGTGTCCGGATTCGTTATTTCGATCACCTCCATTGATCCTCAACTCAGAATCTACCACAACTGTCGTTCCTCATCAAAAGGTTGTCGTCGGAAGATCACTTTCACTGTACCAGACAATTATATAAATAAAGGAGAAAAGGTAACTTGAAGGGTACTTCACAATTGATGGCTATAATTGATTCTTCAGGTCCAAAAATGGTTTGATTTGGGTGCGCCAAATATGGAGATTGGAGTAAAACACAAGGAGGAAAAGCATTGCTATTGATTCGATTTCAGCACGGAAAATAAATTGAGACATTTAAATGTTAATTACTCTATTTTGATTTTGATTATCTTTTTTCAGTAATCATTAGTCACCAAATGCTTGAAATATGTATTTAATTTTAAATGAAAATAAATATATTTGCTTTGTATGAGCCTCGATTCTCAATGAAAAAACCATCAAGAAATGAGACAAATTGAAATTTGCCTGTAACAGAACAAAGTGAGTCGATTTTCCAGTTCCAGTTTCAAATTGTAAGACAATAATTGAATATTAACTTCCTTTAATTTTCCTCCCAATTAACACATCCTGTGTTCCTCAAGAAACCGAGATACTTTACAATAACAAACCAGTATCATAAACCAATGGGAAAAGAAGTGATAACATAGAAACTAGATCTCTTCTCCTCCTTCTCTTTTCTCCTTAACAACAACAATTATACCAGTTCCGAGTAGTAGCCATCGTTGACTATA</canonical>
            <polymorphic>GGTGCCAACGAAAATCTTACCATCCCCCATAAAGTTCCATCTCGTTTCATTGACAAAGTTCGTGCGATTGGAAGAAAACAAGCGATTGGAGTCAAAGGAACATTGATGTGCGGAGGACGTCCGGTTAGAAATGCTACCGTTAAATTATGGGATAACGATTTCTGTAAGGAACTTTTCAAAAGTCTCATCCAAGAAAATATTAAATTTCAGTTGACCCTGATGACCTGATTGGTGAAGCTCATGTCTACGAGAATGGTACTTTCCAAGTGTCCGGATTCGTTATTTCGATCACCTCCATTGATCCTCAACTCAGAATCTACCACAACTGTCGTTCCTCATCAAAAGGTTGTCGTCGGAAGATCACTTTCACTGTACCAGACAATTATATAAATAAAGGAGAAAAGGTAACTTGAAGGGTACTTCACAATTGATGGCTATAATTGATTCTTCAGGTCCAAAAATGGTTTGATTTGGGTGCGCCAAATATGGAGATTGGAGTRAAACACAAGGAGGAAAAGCATTGCTATTGATTCGATTTCAGCACGGAAAATAAATTGAGACATTTAAATGTTAATTACTCTATTTTGATTTTGATTATCTTTTTTCAGTAATCATTAGTCACCAAATGCTTGAAATATGTATTTAATTTTAAATGAAAATAAATATATTTGCTTTGTATGAGCCTCGATTCTCAATGAAAAAACCATCAAGAAATGAGACAAATTGAAATTTGCCTGTAACAGAACAAAGTGAGTCGATTTTCCAGTTCCAGTTTCAAATTGTAAGACAATAATTGAATATTAACTTCCTTTAATTTTCCTCCCAATTAACACATCCTGTGTTCCTCAAGAAACCGAGATACTTTACAATAACAAACCAGTATCATAAACCAATGGGAAAAGAAGTGATAACATAGAAACTAGATCTCTTCTCCTCCTTCTCTTTTCTCCTTAACAACAACAATTATACCAGTTCCGAGTAGTAGCCATCGTTGACTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAGGAGAAAAGGTAACTTGAA</pcr_primer_p1>
		<pcr_primer_p2>ATATTTCAAGCATTTGGTGACTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TAAAGGAGAAAAGGTAACTTGAAGGGTACTTCACAATTGATGGCTATAATTGATTCTTCAGGTCCAAAAATGGTTTGATTTGGGTGCGCCAAATATGGAGATTGGAGTAAAACACAAGGAGGAAAAGCATTGCTATTGATTCGATTTCAGCACGGAAAATAAATTGAGACATTTAAATGTTAATTACTCTATTTTGATTTTGATTATCTTTTTTCAGTAATCATTAGTCACCAAATGCTTGAAATAT</canonical_amplicon>
		<polymorphic_amplicon>TAAAGGAGAAAAGGTAACTTGAAGGGTACTTCACAATTGATGGCTATAATTGATTCTTCAGGTCCAAAAATGGTTTGATTTGGGTGCGCCAAATATGGAGATTGGAGTRAAACACAAGGAGGAAAAGCATTGCTATTGATTCGATTTCAGCACGGAAAATAAATTGAGACATTTAAATGTTAATTACTCTATTTTGATTTTGATTATCTTTTTTCAGTAATCATTAGTCACCAAATGCTTGAAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10136</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>467196</contig_pos>
        <strand>+</strand>
        <context>CAGAAACACT[G/T]CAAGCCTGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACAAAGAACATCGACAAAGTTTTGGAAGAATGCTTCCCGACAGAAACACT</left_flank>
        <right_flank>CAAGCCTGCTCGACTCGATTGACAATCCCTGCATTGGATATCAGTACTGC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATACCAATATTCGAAACCCCCAGAAAATTTTTTTAAACCGAAAGAAGATTTGCGCAATAACCAAGTAGACGATCTGCACTGTACAAACTGTACAAACTGAATTGCACAAATTTCTGTTAGAGGGTGGGCTTCTATTAGAGGTGGGCTTCAAATATAGGTGGGCTTATATTAGAGGAAATACGGTATGATGTTTTCTAATTCTCAATAACCTCTAATTTTCAGTTGTGTGCCTGTTATACGCTTCTCGACGTCTTCTAGGAGATGAATCCCTTCCAAATCTATTCGATTGGTTCATTGGAACATCAACTGGAAGTATGCTAGCACTCTCCATGGTAAACAAGAAGTCAATCAGTGAATGTTTCTTCCAATATTGGGACATGAAAAGTCAAATCTTTCTCCGAGGAAGCACTGTAAAACGTCTTCTTGGTGATCAGGTAGCTGTTCAAACAAAGAACATCGACAAAGTTTTGGAAGAATGCTTCCCGACAGAAACACTTCAAGCCTGCTCGACTCGATTGACAATCCCTGCATTGGATATCAGTACTGCACCAGCTAGACTTCATATCTTCAGAAACTACTCATTCACCAAGCCATTCGGTGTCTCTTTGAACGAAGATCAGGACATTTTGTTCAGAGAAGCTGCAAGAGCAAGCAGTGCTGCACCGACATACTTTGAACCTTTTGTTTATGGAACCAAAGTTTTGGTTGATGGAAGTTTTGTAGCCAATTATCCACTCAATGTTTTGTTCAAGGTAACATATTTTGCTCTAAACTTTTTACAACTTTTCTTTTTTTCAGGAATACGATAGCTTCTCCAGACATCAAAACCCTCTCCATCTCGCAGGAGTTCTTTCAATTGGAACCGGAGAACCAGCTCTTGCCGAGAGAAAATACAAAAGTGGAAAAAGTATCAAAGCAAAAGCAATGAACATCGGACACTTGTCAACATTGATTCTGGAACAAGTAGTGGGTCAAGATCTGACAGCTGTTGAGATGG</canonical>
            <polymorphic>AAAATACCAATATTCGAAACCCCCAGAAAATTTTTTTAAACCGAAAGAAGATTTGCGCAATAACCAAGTAGACGATCTGCACTGTACAAACTGTACAAACTGAATTGCACAAATTTCTGTTAGAGGGTGGGCTTCTATTAGAGGTGGGCTTCAAATATAGGTGGGCTTATATTAGAGGAAATACGGTATGATGTTTTCTAATTCTCAATAACCTCTAATTTTCAGTTGTGTGCCTGTTATACGCTTCTCGACGTCTTCTAGGAGATGAATCCCTTCCAAATCTATTCGATTGGTTCATTGGAACATCAACTGGAAGTATGCTAGCACTCTCCATGGTAAACAAGAAGTCAATCAGTGAATGTTTCTTCCAATATTGGGACATGAAAAGTCAAATCTTTCTCCGAGGAAGCACTGTAAAACGTCTTCTTGGTGATCAGGTAGCTGTTCAAACAAAGAACATCGACAAAGTTTTGGAAGAATGCTTCCCGACAGAAACACTKCAAGCCTGCTCGACTCGATTGACAATCCCTGCATTGGATATCAGTACTGCACCAGCTAGACTTCATATCTTCAGAAACTACTCATTCACCAAGCCATTCGGTGTCTCTTTGAACGAAGATCAGGACATTTTGTTCAGAGAAGCTGCAAGAGCAAGCAGTGCTGCACCGACATACTTTGAACCTTTTGTTTATGGAACCAAAGTTTTGGTTGATGGAAGTTTTGTAGCCAATTATCCACTCAATGTTTTGTTCAAGGTAACATATTTTGCTCTAAACTTTTTACAACTTTTCTTTTTTTCAGGAATACGATAGCTTCTCCAGACATCAAAACCCTCTCCATCTCGCAGGAGTTCTTTCAATTGGAACCGGAGAACCAGCTCTTGCCGAGAGAAAATACAAAAGTGGAAAAAGTATCAAAGCAAAAGCAATGAACATCGGACACTTGTCAACATTGATTCTGGAACAAGTAGTGGGTCAAGATCTGACAGCTGTTGAGATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>504 271 225</canonical_bands>
                <polymorphic_bands>729 271</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTCAATCAGTGAATGTTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>GCTTGGTGAATGAGTAGTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGTCAATCAGTGAATGTTTCTTCCAATATTGGGACATGAAAAGTCAAATCTTTCTCCGAGGAAGCACTGTAAAACGTCTTCTTGGTGATCAGGTAGCTGTTCAAACAAAGAACATCGACAAAGTTTTGGAAGAATGCTTCCCGACAGAAACACTTCAAGCCTGCTCGACTCGATTGACAATCCCTGCATTGGATATCAGTACTGCACCAGCTAGACTTCATATCTTCAGAAACTACTCATTCACCAAGC</canonical_amplicon>
		<polymorphic_amplicon>AGTCAATCAGTGAATGTTTCTTCCAATATTGGGACATGAAAAGTCAAATCTTTCTCCGAGGAAGCACTGTAAAACGTCTTCTTGGTGATCAGGTAGCTGTTCAAACAAAGAACATCGACAAAGTTTTGGAAGAATGCTTCCCGACAGAAACACTKCAAGCCTGCTCGACTCGATTGACAATCCCTGCATTGGATATCAGTACTGCACCAGCTAGACTTCATATCTTCAGAAACTACTCATTCACCAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10137</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>468932</contig_pos>
        <strand>+</strand>
        <context>AACGAGGCAA[A/G]GTCTCGAAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCTGGTTCAACGGAACCCTTTAATAGAAAGATTGAAATGAACGAGGCAA</left_flank>
        <right_flank>GTCTCGAAACGGAAAAATTTTATATTCCATGAAACAAAATTCAAACAAAA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATTTTTCATAATACAGTTTTTATTTCTCGGTATCTTTTTTGTTGGACCACAAGTGGAAGAATAAAATTGGTTCAGATTACGGCTTCCATTTGGTCGGGAAATTCAACTCACCGACCGACCGCCGACCCATCCGACCAACAGTAAACCTAGCTGACCGATCGGTCGGAATGAGTTTGTGCATTTTTGCGTCAACATGCCAGAGAGTGTTTGCGTACGCAAATTTTATTTTACGGCGGACGACGCATTTTTTTACTTTGTGAATGTACGCAAACACTAACTGGCATGTTTACGCGCACATTCACGAATTCGGTCAGCTGTCTCCGATTTTTGAGTAACCGAAATGGAAGCCTCAGTACAGATGAAACCATATCGAAACAGATTAAAAACTGTGGATCGAATCGTTCATTCAATCCGTGTTCTTTTCTGTTTTGAGCTCACAAGATTCGTATCTGGTTCAACGGAACCCTTTAATAGAAAGATTGAAATGAACGAGGCAAGGTCTCGAAACGGAAAAATTTTATATTCCATGAAACAAAATTCAAACAAAATGAAAATTCAAACAATTATTCGGGATATTCGCTCTTGTTGCAATCGCTAAGTGGATATTCGGAGAGCATTCGTTGGTAATCCTGAATTTGTAGTCTCCGTTGTAACTTATTCAATTTCAACATACCGTGTATATCGGACAGAAGCGAGTGAACGGGTTTTGATACTTCGAGTTAGCAGGGAATAGCTGAAAAAAAGAAAAAAAGAAATTATCTTGATATTGAATTTAAATCCCTACGATTCCGTTATCAACTGCTACGTTCATTTTTTCGCGGCAATTGAGAAGATGAGCTGTGGTCGGAGCGGTTTTAAAGCATTTTATGGTTAAAGCATTGTTATCCTCTTTCGGACAGAATGGAACCGGACGTGAAGAATCGGTTCTCTCTTCAAGGAATTCGTGGCACGACTTCGTCAACCAAGAACATCCAAATCCTTTTCCGAAACTGTAGCTG</canonical>
            <polymorphic>TGATTTTTCATAATACAGTTTTTATTTCTCGGTATCTTTTTTGTTGGACCACAAGTGGAAGAATAAAATTGGTTCAGATTACGGCTTCCATTTGGTCGGGAAATTCAACTCACCGACCGACCGCCGACCCATCCGACCAACAGTAAACCTAGCTGACCGATCGGTCGGAATGAGTTTGTGCATTTTTGCGTCAACATGCCAGAGAGTGTTTGCGTACGCAAATTTTATTTTACGGCGGACGACGCATTTTTTTACTTTGTGAATGTACGCAAACACTAACTGGCATGTTTACGCGCACATTCACGAATTCGGTCAGCTGTCTCCGATTTTTGAGTAACCGAAATGGAAGCCTCAGTACAGATGAAACCATATCGAAACAGATTAAAAACTGTGGATCGAATCGTTCATTCAATCCGTGTTCTTTTCTGTTTTGAGCTCACAAGATTCGTATCTGGTTCAACGGAACCCTTTAATAGAAAGATTGAAATGAACGAGGCAARGTCTCGAAACGGAAAAATTTTATATTCCATGAAACAAAATTCAAACAAAATGAAAATTCAAACAATTATTCGGGATATTCGCTCTTGTTGCAATCGCTAAGTGGATATTCGGAGAGCATTCGTTGGTAATCCTGAATTTGTAGTCTCCGTTGTAACTTATTCAATTTCAACATACCGTGTATATCGGACAGAAGCGAGTGAACGGGTTTTGATACTTCGAGTTAGCAGGGAATAGCTGAAAAAAAGAAAAAAAGAAATTATCTTGATATTGAATTTAAATCCCTACGATTCCGTTATCAACTGCTACGTTCATTTTTTCGCGGCAATTGAGAAGATGAGCTGTGGTCGGAGCGGTTTTAAAGCATTTTATGGTTAAAGCATTGTTATCCTCTTTCGGACAGAATGGAACCGGACGTGAAGAATCGGTTCTCTCTTCAAGGAATTCGTGGCACGACTTCGTCAACCAAGAACATCCAAATCCTTTTCCGAAACTGTAGCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTGTTCTTTTCTGTTTTGAG</pcr_primer_p1>
		<pcr_primer_p2>TTGAATAAGTTACAACGGAGACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTGTTCTTTTCTGTTTTGAGCTCACAAGATTCGTATCTGGTTCAACGGAACCCTTTAATAGAAAGATTGAAATGAACGAGGCAAGGTCTCGAAACGGAAAAATTTTATATTCCATGAAACAAAATTCAAACAAAATGAAAATTCAAACAATTATTCGGGATATTCGCTCTTGTTGCAATCGCTAAGTGGATATTCGGAGAGCATTCGTTGGTAATCCTGAATTTGTAGTCTCCGTTGTAACTTATTCAA</canonical_amplicon>
		<polymorphic_amplicon>CGTGTTCTTTTCTGTTTTGAGCTCACAAGATTCGTATCTGGTTCAACGGAACCCTTTAATAGAAAGATTGAAATGAACGAGGCAARGTCTCGAAACGGAAAAATTTTATATTCCATGAAACAAAATTCAAACAAAATGAAAATTCAAACAATTATTCGGGATATTCGCTCTTGTTGCAATCGCTAAGTGGATATTCGGAGAGCATTCGTTGGTAATCCTGAATTTGTAGTCTCCGTTGTAACTTATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10138</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>592770</contig_pos>
        <strand>+</strand>
        <context>GACTTTCGGA[C/G]ACAAATTGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCCGGGAAGAGAGGAGGACAGGGAAACGAACAACGTACCAGACTTTCGGA</left_flank>
        <right_flank>ACAAATTGATTTGACTATGTATTTGGAAAAGACTCGGATTAATTTTAAAC</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTAGTCTTACATGGGGAAACGAGTCATTTCCAATGTAATGAATGAACGAAGCAATTGCATCACACGTGTCGTTGTCCATTGAAGATGAAGCTGATGATGTGTCATCTTCGATCTGAAATTTGTACTTTCCAGAAGATTCTATAATTGAAAAACCAGTTGTATTATCACCTCTACGTTCTCTTCCTCTTCCAGTTCTTCCTCCAATAATTCTCCCTCTTCATCTGCAATATGTGGTTCAGCCGTTTGTGATTCGTTTACTGAATTATCTTCGTATGATGATGTGGCAGAGGATGACGTCATCACTTGGTCAGGGATACTGAAAAAGAAGGATTGTACTTTGAATACCGGGAAAAGAGTTCCAGGAAAATGAAGAGGTCGAATTTGATGAAAGGAGTCTTGAGATTCAAACAAAGACAATAAATTTTCATTGGGGAGAACTGAGAAGAAGGCCGGGAAGAGAGGAGGACAGGGAAACGAACAACGTACCAGACTTTCGGAGACAAATTGATTTGACTATGTATTTGGAAAAGACTCGGATTAATTTTAAACTGATTGGAATGATGCTCCGGGTTTTCACTTTCTTCTCAAAACGTTGAATTCGAACTGCAACCGGTGGCACTTCATTTTTCCTCTTACAGGCACGTAACTACCCGGACTAAAATTTGGAATGTCCTCCAATTTTAGTGAAGTGTTGTAATGGGTTCAAAGTTGGAGTTCAAAAATTCAAATAACTCATCAGTAAACTGTCCAAATTTCAAATTATTTGATCAATTTTGAGCTGAGTTATCGTTTTTCAATGTTGCTTCATCTCAAATCAGACATTACATCTTTGGACTATCATAACTAAACCTAGACTCGAGGAATCGTTTTGAAAGTTACAGTAGCTTTGAATCAAACGTAAAGTTAAGTAAACGTAAAATTATATTGTTAACAATTTTCTTGCATCAAAGATACCTATGTCTAGAGATATACCCGTTTTTATCAGTCCGGGTAATTTTG</canonical>
            <polymorphic>GTTAGTCTTACATGGGGAAACGAGTCATTTCCAATGTAATGAATGAACGAAGCAATTGCATCACACGTGTCGTTGTCCATTGAAGATGAAGCTGATGATGTGTCATCTTCGATCTGAAATTTGTACTTTCCAGAAGATTCTATAATTGAAAAACCAGTTGTATTATCACCTCTACGTTCTCTTCCTCTTCCAGTTCTTCCTCCAATAATTCTCCCTCTTCATCTGCAATATGTGGTTCAGCCGTTTGTGATTCGTTTACTGAATTATCTTCGTATGATGATGTGGCAGAGGATGACGTCATCACTTGGTCAGGGATACTGAAAAAGAAGGATTGTACTTTGAATACCGGGAAAAGAGTTCCAGGAAAATGAAGAGGTCGAATTTGATGAAAGGAGTCTTGAGATTCAAACAAAGACAATAAATTTTCATTGGGGAGAACTGAGAAGAAGGCCGGGAAGAGAGGAGGACAGGGAAACGAACAACGTACCAGACTTTCGGASACAAATTGATTTGACTATGTATTTGGAAAAGACTCGGATTAATTTTAAACTGATTGGAATGATGCTCCGGGTTTTCACTTTCTTCTCAAAACGTTGAATTCGAACTGCAACCGGTGGCACTTCATTTTTCCTCTTACAGGCACGTAACTACCCGGACTAAAATTTGGAATGTCCTCCAATTTTAGTGAAGTGTTGTAATGGGTTCAAAGTTGGAGTTCAAAAATTCAAATAACTCATCAGTAAACTGTCCAAATTTCAAATTATTTGATCAATTTTGAGCTGAGTTATCGTTTTTCAATGTTGCTTCATCTCAAATCAGACATTACATCTTTGGACTATCATAACTAAACCTAGACTCGAGGAATCGTTTTGAAAGTTACAGTAGCTTTGAATCAAACGTAAAGTTAAGTAAACGTAAAATTATATTGTTAACAATTTTCTTGCATCAAAGATACCTATGTCTAGAGATATACCCGTTTTTATCAGTCCGGGTAATTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGAGATTCAAACAAAGACAAT</pcr_primer_p1>
		<pcr_primer_p2>TGTAAGAGGAAAAATGAAGTGC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CTTGAGATTCAAACAAAGACAATAAATTTTCATTGGGGAGAACTGAGAAGAAGGCCGGGAAGAGAGGAGGACAGGGAAACGAACAACGTACCAGACTTTCGGAGACAAATTGATTTGACTATGTATTTGGAAAAGACTCGGATTAATTTTAAACTGATTGGAATGATGCTCCGGGTTTTCACTTTCTTCTCAAAACGTTGAATTCGAACTGCAACCGGTGGCACTTCATTTTTCCTCTTACA</canonical_amplicon>
		<polymorphic_amplicon>CTTGAGATTCAAACAAAGACAATAAATTTTCATTGGGGAGAACTGAGAAGAAGGCCGGGAAGAGAGGAGGACAGGGAAACGAACAACGTACCAGACTTTCGGASACAAATTGATTTGACTATGTATTTGGAAAAGACTCGGATTAATTTTAAACTGATTGGAATGATGCTCCGGGTTTTCACTTTCTTCTCAAAACGTTGAATTCGAACTGCAACCGGTGGCACTTCATTTTTCCTCTTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10139</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>620801</contig_pos>
        <strand>+</strand>
        <context>ATTCACATAA[C/T]TTTATTCTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGATGGTCCGTAGAAAGCTTATTGAATAAAGAATTGAACTATTCACATAA</left_flank>
        <right_flank>TTTATTCTAAAAAGGCACATAAAAGTCTGAGCTTCACAACCGTACTCAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAACGAGAAAACAAATACGGAAATAAAAATAATTCAAGTTACGGTAGTTGTCGTTGTGGAACATTCGGCCACGGCCACCGGAGATTCTCTTCCATGCCCCAACTTCCATGTACCAGTATTATAATCAAAGTAAAAATGATTCAGACCAACGGAGAAGAGAAATACGAACACCGTCGAGCTGCAAATAAGCTCCGAGCTGACCATGATTTGAAGCGTGAAAAGGGAAAGATTTTCGGAGGAAAAAAGAAAAAAGAAGGCGAATACATGGCATGTGAATCTCTTCGGGAAAGAGGAGAAAAGCACGAAAACGAGAAGGAAGAAAATATTCCGATTGGCGAACATTTGGATATCAAGAAAAGATCGTTGGCTTACCGAGAAATGCTCAATACCGGAGAAGAAATGAAATTCGAGGGCAGTCCACAGATCGACGACGCATCCTTGGATCAGGATGGTCCGTAGAAAGCTTATTGAATAAAGAATTGAACTATTCACATAACTTTATTCTAAAAAGGCACATAAAAGTCTGAGCTTCACAACCGTACTCAAAATTAATTACACTTGATATTATCGAAAAAAAGCCATAACAAAAAAAGAAAAGCTCTTGAATAACCGGAGGTCCTACAAAAAAAAACTAAAAAATCTAAATTTTTAGGCGAATTGCACAAGAACGGCGTTCTTTGGAACATTCTTCCCAGCTTGACATTTGATGTGTTCGATTTTCGAATCTTCTGGTGCCCGAATAATGTATTCCATTTTCATTGCTGTCATGACCACTAAAGCTTGTCCGGTGGTGACCTGAGAACTCGAGAATAAAAATTAAAAAAAAAGAATGTTATACCTGATCTCCTGGCTTCACTAAAATTTTCTCGATGATTCCTGGCATAGGTGCGACAGCTGAATGGCTAGCAGCTCCTCCAGCAAGCGAATCGAATGCCTCGTGGACTGCGGGAGTTTCGTATTCATTTTGACCAACCCCGTTTACCTCAATATCAGAATC</canonical>
            <polymorphic>GAAAAACGAGAAAACAAATACGGAAATAAAAATAATTCAAGTTACGGTAGTTGTCGTTGTGGAACATTCGGCCACGGCCACCGGAGATTCTCTTCCATGCCCCAACTTCCATGTACCAGTATTATAATCAAAGTAAAAATGATTCAGACCAACGGAGAAGAGAAATACGAACACCGTCGAGCTGCAAATAAGCTCCGAGCTGACCATGATTTGAAGCGTGAAAAGGGAAAGATTTTCGGAGGAAAAAAGAAAAAAGAAGGCGAATACATGGCATGTGAATCTCTTCGGGAAAGAGGAGAAAAGCACGAAAACGAGAAGGAAGAAAATATTCCGATTGGCGAACATTTGGATATCAAGAAAAGATCGTTGGCTTACCGAGAAATGCTCAATACCGGAGAAGAAATGAAATTCGAGGGCAGTCCACAGATCGACGACGCATCCTTGGATCAGGATGGTCCGTAGAAAGCTTATTGAATAAAGAATTGAACTATTCACATAAYTTTATTCTAAAAAGGCACATAAAAGTCTGAGCTTCACAACCGTACTCAAAATTAATTACACTTGATATTATCGAAAAAAAGCCATAACAAAAAAAGAAAAGCTCTTGAATAACCGGAGGTCCTACAAAAAAAAACTAAAAAATCTAAATTTTTAGGCGAATTGCACAAGAACGGCGTTCTTTGGAACATTCTTCCCAGCTTGACATTTGATGTGTTCGATTTTCGAATCTTCTGGTGCCCGAATAATGTATTCCATTTTCATTGCTGTCATGACCACTAAAGCTTGTCCGGTGGTGACCTGAGAACTCGAGAATAAAAATTAAAAAAAAAGAATGTTATACCTGATCTCCTGGCTTCACTAAAATTTTCTCGATGATTCCTGGCATAGGTGCGACAGCTGAATGGCTAGCAGCTCCTCCAGCAAGCGAATCGAATGCCTCGTGGACTGCGGGAGTTTCGTATTCATTTTGACCAACCCCGTTTACCTCAATATCAGAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAACGAGAAGGAAGAAAATA</pcr_primer_p1>
		<pcr_primer_p2>ATTAATTTTGAGTACGGTTGTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAACGAGAAGGAAGAAAATATTCCGATTGGCGAACATTTGGATATCAAGAAAAGATCGTTGGCTTACCGAGAAATGCTCAATACCGGAGAAGAAATGAAATTCGAGGGCAGTCCACAGATCGACGACGCATCCTTGGATCAGGATGGTCCGTAGAAAGCTTATTGAATAAAGAATTGAACTATTCACATAACTTTATTCTAAAAAGGCACATAAAAGTCTGAGCTTCACAACCGTACTCAAAATTAAT</canonical_amplicon>
		<polymorphic_amplicon>GAAAACGAGAAGGAAGAAAATATTCCGATTGGCGAACATTTGGATATCAAGAAAAGATCGTTGGCTTACCGAGAAATGCTCAATACCGGAGAAGAAATGAAATTCGAGGGCAGTCCACAGATCGACGACGCATCCTTGGATCAGGATGGTCCGTAGAAAGCTTATTGAATAAAGAATTGAACTATTCACATAAYTTTATTCTAAAAAGGCACATAAAAGTCTGAGCTTCACAACCGTACTCAAAATTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10140</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>633495</contig_pos>
        <strand>+</strand>
        <context>ATATCGTCAG[A/G]GAATGACATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATTTTCAGTGCTCTCTTACGGCGACGACCAAAAGGGCAATATCGTCAG</left_flank>
        <right_flank>GAATGACATTCAAGGCAAACGAGAAAAAGGAGTGCAAAAACTCGAAAACA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCTCTCGAGGAGTTGAACGTGTGGGACGAGGATTAAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGTGAAAGCGGTCGCCCGATTGCATTCAAAGGCGAGGACGACATCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAGCCAAACTTATACTAAAGTATCGAGAATTTAGTAAAAGTTCAATTTACAAAAGAAAAACTTCCAGAAGAAAATAAAATAGACCAAAGTTTTTGGAGCACACTGTTGGTACACTCTGCTCCATTCGTCGCAAAAATATAGGGACGTTTTTTCCCCCATTCCTCGTCTGAAAATTGTACTTTTCTCTCCCTCGACTCCAATCCATTTTTTATTTTCTCTCCAGTGTTCCCATAATATTTTCAGTGCTCTCTTACGGCGACGACCAAAAGGGCAATATCGTCAGGGAATGACATTCAAGGCAAACGAGAAAAAGGAGTGCAAAAACTCGAAAACAAAAAGTGCAAGTCTTGAAAAATAGCATTCCAGTGAAGAGAGGAATTCAGAGAAAAGAAGTGCAAGAGTGGAGAAAGGAGAAGAGAGAAAGGCCAAAGATTATGAGGCTGTTTTTCTGCTTTTTCTTTTGAGTCAGAAAATAAATACGAAATAGGGGAGGACCACTGAAACTAAAACTATTTTTATCCAAAGAATAAATCGATCGATCAAGATACTTCGAAACCAAACGAAAGACAGATGGAAAATTCGAAAACTTTGACCTTAAAATAGCCAAGACCCGGTGTAAAACGAGTGGAAGAATTTCGATAAAATCAGATGTACCTTCAGAATACGGTTGCCTTCGAGAGAAGATTCACAAAGATCTCTACGGTAGATTAAAATCGTTCAGATAGATGATCGCTAAAAGGAAATGTGTGGAACAGGACATTTTATAGAAAAATATAAACTAGAC</canonical>
            <polymorphic>GCCTCTCGAGGAGTTGAACGTGTGGGACGAGGATTAAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGTGAAAGCGGTCGCCCGATTGCATTCAAAGGCGAGGACGACATCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAGCCAAACTTATACTAAAGTATCGAGAATTTAGTAAAAGTTCAATTTACAAAAGAAAAACTTCCAGAAGAAAATAAAATAGACCAAAGTTTTTGGAGCACACTGTTGGTACACTCTGCTCCATTCGTCGCAAAAATATAGGGACGTTTTTTCCCCCATTCCTCGTCTGAAAATTGTACTTTTCTCTCCCTCGACTCCAATCCATTTTTTATTTTCTCTCCAGTGTTCCCATAATATTTTCAGTGCTCTCTTACGGCGACGACCAAAAGGGCAATATCGTCAGRGAATGACATTCAAGGCAAACGAGAAAAAGGAGTGCAAAAACTCGAAAACAAAAAGTGCAAGTCTTGAAAAATAGCATTCCAGTGAAGAGAGGAATTCAGAGAAAAGAAGTGCAAGAGTGGAGAAAGGAGAAGAGAGAAAGGCCAAAGATTATGAGGCTGTTTTTCTGCTTTTTCTTTTGAGTCAGAAAATAAATACGAAATAGGGGAGGACCACTGAAACTAAAACTATTTTTATCCAAAGAATAAATCGATCGATCAAGATACTTCGAAACCAAACGAAAGACAGATGGAAAATTCGAAAACTTTGACCTTAAAATAGCCAAGACCCGGTGTAAAACGAGTGGAAGAATTTCGATAAAATCAGATGTACCTTCAGAATACGGTTGCCTTCGAGAGAAGATTCACAAAGATCTCTACGGTAGATTAAAATCGTTCAGATAGATGATCGCTAAAAGGAAATGTGTGGAACAGGACATTTTATAGAAAAATATAAACTAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTATTTTCTCTCCAGTGTTC</pcr_primer_p1>
		<pcr_primer_p2>AGAAAAACAGCCTCATAATCTTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTTTATTTTCTCTCCAGTGTTCCCATAATATTTTCAGTGCTCTCTTACGGCGACGACCAAAAGGGCAATATCGTCAGGGAATGACATTCAAGGCAAACGAGAAAAAGGAGTGCAAAAACTCGAAAACAAAAAGTGCAAGTCTTGAAAAATAGCATTCCAGTGAAGAGAGGAATTCAGAGAAAAGAAGTGCAAGAGTGGAGAAAGGAGAAGAGAGAAAGGCCAAAGATTATGAGGCTGTTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTATTTTCTCTCCAGTGTTCCCATAATATTTTCAGTGCTCTCTTACGGCGACGACCAAAAGGGCAATATCGTCAGRGAATGACATTCAAGGCAAACGAGAAAAAGGAGTGCAAAAACTCGAAAACAAAAAGTGCAAGTCTTGAAAAATAGCATTCCAGTGAAGAGAGGAATTCAGAGAAAAGAAGTGCAAGAGTGGAGAAAGGAGAAGAGAGAAAGGCCAAAGATTATGAGGCTGTTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10141</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>633482</contig_pos>
        <strand>+</strand>
        <context>GACCAAAAGG[A/G]CAATATCGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGTGTTCCCATAATATTTTCAGTGCTCTCTTACGGCGACGACCAAAAGG</left_flank>
        <right_flank>CAATATCGTCAGGGAATGACATTCAAGGCAAACGAGAAAAAGGAGTGCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGTTTAAATATGCCTCTCGAGGAGTTGAACGTGTGGGACGAGGATTAAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGTGAAAGCGGTCGCCCGATTGCATTCAAAGGCGAGGACGACATCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAGCCAAACTTATACTAAAGTATCGAGAATTTAGTAAAAGTTCAATTTACAAAAGAAAAACTTCCAGAAGAAAATAAAATAGACCAAAGTTTTTGGAGCACACTGTTGGTACACTCTGCTCCATTCGTCGCAAAAATATAGGGACGTTTTTTCCCCCATTCCTCGTCTGAAAATTGTACTTTTCTCTCCCTCGACTCCAATCCATTTTTTATTTTCTCTCCAGTGTTCCCATAATATTTTCAGTGCTCTCTTACGGCGACGACCAAAAGGGCAATATCGTCAGGGAATGACATTCAAGGCAAACGAGAAAAAGGAGTGCAAAAACTCGAAAACAAAAAGTGCAAGTCTTGAAAAATAGCATTCCAGTGAAGAGAGGAATTCAGAGAAAAGAAGTGCAAGAGTGGAGAAAGGAGAAGAGAGAAAGGCCAAAGATTATGAGGCTGTTTTTCTGCTTTTTCTTTTGAGTCAGAAAATAAATACGAAATAGGGGAGGACCACTGAAACTAAAACTATTTTTATCCAAAGAATAAATCGATCGATCAAGATACTTCGAAACCAAACGAAAGACAGATGGAAAATTCGAAAACTTTGACCTTAAAATAGCCAAGACCCGGTGTAAAACGAGTGGAAGAATTTCGATAAAATCAGATGTACCTTCAGAATACGGTTGCCTTCGAGAGAAGATTCACAAAGATCTCTACGGTAGATTAAAATCGTTCAGATAGATGATCGCTAAAAGGAAATGTGTGGAACAGGACATTTTATAGAAAA</canonical>
            <polymorphic>TTCGTTTAAATATGCCTCTCGAGGAGTTGAACGTGTGGGACGAGGATTAAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGTGAAAGCGGTCGCCCGATTGCATTCAAAGGCGAGGACGACATCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAGCCAAACTTATACTAAAGTATCGAGAATTTAGTAAAAGTTCAATTTACAAAAGAAAAACTTCCAGAAGAAAATAAAATAGACCAAAGTTTTTGGAGCACACTGTTGGTACACTCTGCTCCATTCGTCGCAAAAATATAGGGACGTTTTTTCCCCCATTCCTCGTCTGAAAATTGTACTTTTCTCTCCCTCGACTCCAATCCATTTTTTATTTTCTCTCCAGTGTTCCCATAATATTTTCAGTGCTCTCTTACGGCGACGACCAAAAGGRCAATATCGTCAGGGAATGACATTCAAGGCAAACGAGAAAAAGGAGTGCAAAAACTCGAAAACAAAAAGTGCAAGTCTTGAAAAATAGCATTCCAGTGAAGAGAGGAATTCAGAGAAAAGAAGTGCAAGAGTGGAGAAAGGAGAAGAGAGAAAGGCCAAAGATTATGAGGCTGTTTTTCTGCTTTTTCTTTTGAGTCAGAAAATAAATACGAAATAGGGGAGGACCACTGAAACTAAAACTATTTTTATCCAAAGAATAAATCGATCGATCAAGATACTTCGAAACCAAACGAAAGACAGATGGAAAATTCGAAAACTTTGACCTTAAAATAGCCAAGACCCGGTGTAAAACGAGTGGAAGAATTTCGATAAAATCAGATGTACCTTCAGAATACGGTTGCCTTCGAGAGAAGATTCACAAAGATCTCTACGGTAGATTAAAATCGTTCAGATAGATGATCGCTAAAAGGAAATGTGTGGAACAGGACATTTTATAGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTATTTTCTCTCCAGTGTTC</pcr_primer_p1>
		<pcr_primer_p2>AGAAAAACAGCCTCATAATCTTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTTTATTTTCTCTCCAGTGTTCCCATAATATTTTCAGTGCTCTCTTACGGCGACGACCAAAAGGGCAATATCGTCAGGGAATGACATTCAAGGCAAACGAGAAAAAGGAGTGCAAAAACTCGAAAACAAAAAGTGCAAGTCTTGAAAAATAGCATTCCAGTGAAGAGAGGAATTCAGAGAAAAGAAGTGCAAGAGTGGAGAAAGGAGAAGAGAGAAAGGCCAAAGATTATGAGGCTGTTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTATTTTCTCTCCAGTGTTCCCATAATATTTTCAGTGCTCTCTTACGGCGACGACCAAAAGGRCAATATCGTCAGGGAATGACATTCAAGGCAAACGAGAAAAAGGAGTGCAAAAACTCGAAAACAAAAAGTGCAAGTCTTGAAAAATAGCATTCCAGTGAAGAGAGGAATTCAGAGAAAAGAAGTGCAAGAGTGGAGAAAGGAGAAGAGAGAAAGGCCAAAGATTATGAGGCTGTTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10142</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>638115</contig_pos>
        <strand>+</strand>
        <context>AGCATTAAAA[A/T]ATGATTTCGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACGATCTGTGCTCATTTTGATGGGGTACAAAGTGGGAAAGAGCATTAAAA</left_flank>
        <right_flank>ATGATTTCGTGGGCGTCGAGCAGAGAAAACCAGCAAAAAGTTAAGGGTGA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGAAACCCAAAAAACATTGGGTTACCGTACTTACCAGAGTTTTGAAAACTTGGAGACTGAACCAAGGAAACTTTGAGGGAAAGTATAGGAAACATAATTTCAAAGTTGGGGATAAAAATATCAACTTTGAAAAGTTTTTCATTGAAAAATCCTGCCTATTCTGGAAAACTCTGACAAAGTTTTTGAATTACCGTAAAAAACTGTAATAGAATGGTCCCGTAAATTTGTATCTCGGTACCTGTCAAAGATTTAAAAAGTTGTCAACTGTTGGATTCTTGATCGTAATATCACAACCATGTTAGTTGACACAGTTTTGATATCTTGCGAAGGAGCCAAGAAACATAGGACAGTATGGGGCCCGTCTATTACAGGTTTTAAAGTATTACATAACTCACCAGTTGTAAAGTAACATTTGTAGGATTATCAGCAGAAAAAATGGTGGGATAGACGATCTGTGCTCATTTTGATGGGGTACAAAGTGGGAAAGAGCATTAAAAAATGATTTCGTGGGCGTCGAGCAGAGAAAACCAGCAAAAAGTTAAGGGTGAGACGGTTGACCAGAGTATATTTGAATTGGATTGTTGATTTGTGAAAGACGCCGCGCACTTTTTGAATGTGTGATCTTCTTGGTACATATCAACCTACTTTTTTTTCAAGTGGAAAAAATAATAAAGGAAATGCTCTAGGAAAAAAGTTTCAATTAAACGACATCTATCGTGGATCACAGGTAGACCTTTAAAATCTGAATCTTTCCGCTAAAAAACTTCGTGGCAGTCATCTCCTTAAGGGTCCGACAGCTTTCAATATCAGTCGAAAAATCTTCAAAATCTTACAGGGCACCCGCTGCATGTCTGACTACTATAAAGAACCATCCAATCTTATTTATCCTGAATGAAAGTTATATTTACAACAGGAGCAATACGCAACATTCTTGGCTAACAGTTTATTTTCAGAAACAACAATAAAAATCAGACGATAGAAACCCAAGAGTAGTTAAT</canonical>
            <polymorphic>TGAGAAACCCAAAAAACATTGGGTTACCGTACTTACCAGAGTTTTGAAAACTTGGAGACTGAACCAAGGAAACTTTGAGGGAAAGTATAGGAAACATAATTTCAAAGTTGGGGATAAAAATATCAACTTTGAAAAGTTTTTCATTGAAAAATCCTGCCTATTCTGGAAAACTCTGACAAAGTTTTTGAATTACCGTAAAAAACTGTAATAGAATGGTCCCGTAAATTTGTATCTCGGTACCTGTCAAAGATTTAAAAAGTTGTCAACTGTTGGATTCTTGATCGTAATATCACAACCATGTTAGTTGACACAGTTTTGATATCTTGCGAAGGAGCCAAGAAACATAGGACAGTATGGGGCCCGTCTATTACAGGTTTTAAAGTATTACATAACTCACCAGTTGTAAAGTAACATTTGTAGGATTATCAGCAGAAAAAATGGTGGGATAGACGATCTGTGCTCATTTTGATGGGGTACAAAGTGGGAAAGAGCATTAAAAWATGATTTCGTGGGCGTCGAGCAGAGAAAACCAGCAAAAAGTTAAGGGTGAGACGGTTGACCAGAGTATATTTGAATTGGATTGTTGATTTGTGAAAGACGCCGCGCACTTTTTGAATGTGTGATCTTCTTGGTACATATCAACCTACTTTTTTTTCAAGTGGAAAAAATAATAAAGGAAATGCTCTAGGAAAAAAGTTTCAATTAAACGACATCTATCGTGGATCACAGGTAGACCTTTAAAATCTGAATCTTTCCGCTAAAAAACTTCGTGGCAGTCATCTCCTTAAGGGTCCGACAGCTTTCAATATCAGTCGAAAAATCTTCAAAATCTTACAGGGCACCCGCTGCATGTCTGACTACTATAAAGAACCATCCAATCTTATTTATCCTGAATGAAAGTTATATTTACAACAGGAGCAATACGCAACATTCTTGGCTAACAGTTTATTTTCAGAAACAACAATAAAAATCAGACGATAGAAACCCAAGAGTAGTTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGACGATCTGTGCTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCCTAGAGCATTTCCTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATAGACGATCTGTGCTCATTTTGATGGGGTACAAAGTGGGAAAGAGCATTAAAAAATGATTTCGTGGGCGTCGAGCAGAGAAAACCAGCAAAAAGTTAAGGGTGAGACGGTTGACCAGAGTATATTTGAATTGGATTGTTGATTTGTGAAAGACGCCGCGCACTTTTTGAATGTGTGATCTTCTTGGTACATATCAACCTACTTTTTTTTCAAGTGGAAAAAATAATAAAGGAAATGCTCTAGGAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATAGACGATCTGTGCTCATTTTGATGGGGTACAAAGTGGGAAAGAGCATTAAAAWATGATTTCGTGGGCGTCGAGCAGAGAAAACCAGCAAAAAGTTAAGGGTGAGACGGTTGACCAGAGTATATTTGAATTGGATTGTTGATTTGTGAAAGACGCCGCGCACTTTTTGAATGTGTGATCTTCTTGGTACATATCAACCTACTTTTTTTTCAAGTGGAAAAAATAATAAAGGAAATGCTCTAGGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10143</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>638485</contig_pos>
        <strand>+</strand>
        <context>ACTATAAAGA[A/C]CCATCCAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCTTCAAAATCTTACAGGGCACCCGCTGCATGTCTGACTACTATAAAGA</left_flank>
        <right_flank>CCATCCAATCTTATTTATCCTGAATGAAAGTTATATTTACAACAGGAGCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGGTTTTAAAGTATTACATAACTCACCAGTTGTAAAGTAACATTTGTAGGATTATCAGCAGAAAAAATGGTGGGATAGACGATCTGTGCTCATTTTGATGGGGTACAAAGTGGGAAAGAGCATTAAAAAATGATTTCGTGGGCGTCGAGCAGAGAAAACCAGCAAAAAGTTAAGGGTGAGACGGTTGACCAGAGTATATTTGAATTGGATTGTTGATTTGTGAAAGACGCCGCGCACTTTTTGAATGTGTGATCTTCTTGGTACATATCAACCTACTTTTTTTTCAAGTGGAAAAAATAATAAAGGAAATGCTCTAGGAAAAAAGTTTCAATTAAACGACATCTATCGTGGATCACAGGTAGACCTTTAAAATCTGAATCTTTCCGCTAAAAAACTTCGTGGCAGTCATCTCCTTAAGGGTCCGACAGCTTTCAATATCAGTCGAAAAATCTTCAAAATCTTACAGGGCACCCGCTGCATGTCTGACTACTATAAAGAACCATCCAATCTTATTTATCCTGAATGAAAGTTATATTTACAACAGGAGCAATACGCAACATTCTTGGCTAACAGTTTATTTTCAGAAACAACAATAAAAATCAGACGATAGAAACCCAAGAGTAGTTAATTATTTTTTGTTTTTACCAACAGCGGTATCGGCACGTCCCTTCACCATCTCTTCGTTCTTGTCGTTAATGATCTTTGTGACGTGGGCAGAAACTTTTTCCTGAAAACGGAACAGCTGTATCAGAAGGTTAGGTTAATATCACACTCACCGCTTCAATGATATGTGCCTTCTTTGGAGCAATATGTAAGAACTTTCCCTTCTTTGGTCCCTCTTTCTTGGCTTTCTTGACCTTCTGTTTGACACCCTTTGGAAGAACGGTCTTTTGCTTCAGCTTTCCTTGAACCATTTTTTAGCGGACAAACAGAACGTAGACTGCAGCAGAAAGGCAGGAGAGCGCTACGAATGAGTGAAGACGGATACCGATGACAGCG</canonical>
            <polymorphic>CAGGTTTTAAAGTATTACATAACTCACCAGTTGTAAAGTAACATTTGTAGGATTATCAGCAGAAAAAATGGTGGGATAGACGATCTGTGCTCATTTTGATGGGGTACAAAGTGGGAAAGAGCATTAAAAAATGATTTCGTGGGCGTCGAGCAGAGAAAACCAGCAAAAAGTTAAGGGTGAGACGGTTGACCAGAGTATATTTGAATTGGATTGTTGATTTGTGAAAGACGCCGCGCACTTTTTGAATGTGTGATCTTCTTGGTACATATCAACCTACTTTTTTTTCAAGTGGAAAAAATAATAAAGGAAATGCTCTAGGAAAAAAGTTTCAATTAAACGACATCTATCGTGGATCACAGGTAGACCTTTAAAATCTGAATCTTTCCGCTAAAAAACTTCGTGGCAGTCATCTCCTTAAGGGTCCGACAGCTTTCAATATCAGTCGAAAAATCTTCAAAATCTTACAGGGCACCCGCTGCATGTCTGACTACTATAAAGAMCCATCCAATCTTATTTATCCTGAATGAAAGTTATATTTACAACAGGAGCAATACGCAACATTCTTGGCTAACAGTTTATTTTCAGAAACAACAATAAAAATCAGACGATAGAAACCCAAGAGTAGTTAATTATTTTTTGTTTTTACCAACAGCGGTATCGGCACGTCCCTTCACCATCTCTTCGTTCTTGTCGTTAATGATCTTTGTGACGTGGGCAGAAACTTTTTCCTGAAAACGGAACAGCTGTATCAGAAGGTTAGGTTAATATCACACTCACCGCTTCAATGATATGTGCCTTCTTTGGAGCAATATGTAAGAACTTTCCCTTCTTTGGTCCCTCTTTCTTGGCTTTCTTGACCTTCTGTTTGACACCCTTTGGAAGAACGGTCTTTTGCTTCAGCTTTCCTTGAACCATTTTTTAGCGGACAAACAGAACGTAGACTGCAGCAGAAAGGCAGGAGAGCGCTACGAATGAGTGAAGACGGATACCGATGACAGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGTAGACCTTTAAAATCTGAAT</pcr_primer_p1>
		<pcr_primer_p2>CGTCTGATTTTTATTGTTGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAGGTAGACCTTTAAAATCTGAATCTTTCCGCTAAAAAACTTCGTGGCAGTCATCTCCTTAAGGGTCCGACAGCTTTCAATATCAGTCGAAAAATCTTCAAAATCTTACAGGGCACCCGCTGCATGTCTGACTACTATAAAGAACCATCCAATCTTATTTATCCTGAATGAAAGTTATATTTACAACAGGAGCAATACGCAACATTCTTGGCTAACAGTTTATTTTCAGAAACAACAATAAAAATCAGACG</canonical_amplicon>
		<polymorphic_amplicon>CAGGTAGACCTTTAAAATCTGAATCTTTCCGCTAAAAAACTTCGTGGCAGTCATCTCCTTAAGGGTCCGACAGCTTTCAATATCAGTCGAAAAATCTTCAAAATCTTACAGGGCACCCGCTGCATGTCTGACTACTATAAAGAMCCATCCAATCTTATTTATCCTGAATGAAAGTTATATTTACAACAGGAGCAATACGCAACATTCTTGGCTAACAGTTTATTTTCAGAAACAACAATAAAAATCAGACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10144</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>645864</contig_pos>
        <strand>+</strand>
        <context>GCGAGCGCAC[A/T]TTCATGCTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACAGTCCTGCAAAATTTTTTCGAATTCTGTCGGAGTGCGAGCGAGCGCAC</left_flank>
        <right_flank>TTCATGCTCCCGTTCAAAACAAGAGACCCCGGAAATTCCGGGGTCTCCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAGATATTTTGCACTTTTTGTAATTTAAGACTTTTAAATCAAAATTAACATACTTCCAAACAATCCTCCAGAGGGTGTGGAAGTAGTTGTAGTACCGAAAAGTGAAGGAGTCGACGATGCTTGAGTTGTTGACCCGAACAGTGGCTTTGATGGAGTTCTAAAAGCGGTACCATTTGACATTAAGTCAAAATATTCAAGAAAACATACGTGCTTCCAAACAACGAGCCAGCGGAAGTTGCTGGAGCACCTGGTGTGGGAAAAGTGAAAGCAGTTTTTTGTGGAGTTGAAGACCCGAAGAGTGACATGTTCTGAAAACGAAGGAAAGTCAATAAATTGGTGAATATAAAAGTTGATTAAGAGACGATAAAACATTCAACACATTTTTTCAGTTGGAGATAATACAATTTATAAACAAATAAAAGCGCAAAACGATCGATTTTGGGTTATACAGTCCTGCAAAATTTTTTCGAATTCTGTCGGAGTGCGAGCGAGCGCACATTCATGCTCCCGTTCAAAACAAGAGACCCCGGAAATTCCGGGGTCTCCAAAACAAACAAACCCTCAAATTCCAAGGAAAAAAACATTCCGGGAAAAAACACTGAGAAAGTGCGCGAATTCAGTGGGCGGAACCTAAATTGCAAACTGTACAAAATTTTGCCGCACAGTTTTCTCGCACATTTTTGCACGGTCATGACACAAACTGTGCGGCAAAACCGTGCGCAGCTTGCAATTTGAGCTCTGCCCACTTTTTGCAAGGACATTTTTTCTTGGAATTTAAGAAGCCGCTGCTCGGTCATGTCCTGTTACATATACTCTGTTAAAATTGAAGTACCGTAAAACCTGTAATAAAAGGACACTGTCGAGTTTGAATTATTAATTATCTCATTTCTATACAAGATATTAAAAATGGGTCAACTGATAAAATGTTTGGAAAATTATGATAAACAATTTTTCAGTTGACAACTTTTTTATATCTTTTACAGTAACCGAGGTAAATT</canonical>
            <polymorphic>ATCAGATATTTTGCACTTTTTGTAATTTAAGACTTTTAAATCAAAATTAACATACTTCCAAACAATCCTCCAGAGGGTGTGGAAGTAGTTGTAGTACCGAAAAGTGAAGGAGTCGACGATGCTTGAGTTGTTGACCCGAACAGTGGCTTTGATGGAGTTCTAAAAGCGGTACCATTTGACATTAAGTCAAAATATTCAAGAAAACATACGTGCTTCCAAACAACGAGCCAGCGGAAGTTGCTGGAGCACCTGGTGTGGGAAAAGTGAAAGCAGTTTTTTGTGGAGTTGAAGACCCGAAGAGTGACATGTTCTGAAAACGAAGGAAAGTCAATAAATTGGTGAATATAAAAGTTGATTAAGAGACGATAAAACATTCAACACATTTTTTCAGTTGGAGATAATACAATTTATAAACAAATAAAAGCGCAAAACGATCGATTTTGGGTTATACAGTCCTGCAAAATTTTTTCGAATTCTGTCGGAGTGCGAGCGAGCGCACWTTCATGCTCCCGTTCAAAACAAGAGACCCCGGAAATTCCGGGGTCTCCAAAACAAACAAACCCTCAAATTCCAAGGAAAAAAACATTCCGGGAAAAAACACTGAGAAAGTGCGCGAATTCAGTGGGCGGAACCTAAATTGCAAACTGTACAAAATTTTGCCGCACAGTTTTCTCGCACATTTTTGCACGGTCATGACACAAACTGTGCGGCAAAACCGTGCGCAGCTTGCAATTTGAGCTCTGCCCACTTTTTGCAAGGACATTTTTTCTTGGAATTTAAGAAGCCGCTGCTCGGTCATGTCCTGTTACATATACTCTGTTAAAATTGAAGTACCGTAAAACCTGTAATAAAAGGACACTGTCGAGTTTGAATTATTAATTATCTCATTTCTATACAAGATATTAAAAATGGGTCAACTGATAAAATGTTTGGAAAATTATGATAAACAATTTTTCAGTTGACAACTTTTTTATATCTTTTACAGTAACCGAGGTAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGATTTTGGGTTATACAGTC</pcr_primer_p1>
		<pcr_primer_p2>ACAGAGTATATGTAACAGGACATGA</pcr_primer_p2>
		<pcr_amplicon_size>387</pcr_amplicon_size>
		<canonical_amplicon>ATCGATTTTGGGTTATACAGTCCTGCAAAATTTTTTCGAATTCTGTCGGAGTGCGAGCGAGCGCACATTCATGCTCCCGTTCAAAACAAGAGACCCCGGAAATTCCGGGGTCTCCAAAACAAACAAACCCTCAAATTCCAAGGAAAAAAACATTCCGGGAAAAAACACTGAGAAAGTGCGCGAATTCAGTGGGCGGAACCTAAATTGCAAACTGTACAAAATTTTGCCGCACAGTTTTCTCGCACATTTTTGCACGGTCATGACACAAACTGTGCGGCAAAACCGTGCGCAGCTTGCAATTTGAGCTCTGCCCACTTTTTGCAAGGACATTTTTTCTTGGAATTTAAGAAGCCGCTGCTCGGTCATGTCCTGTTACATATACTCTGT</canonical_amplicon>
		<polymorphic_amplicon>ATCGATTTTGGGTTATACAGTCCTGCAAAATTTTTTCGAATTCTGTCGGAGTGCGAGCGAGCGCACWTTCATGCTCCCGTTCAAAACAAGAGACCCCGGAAATTCCGGGGTCTCCAAAACAAACAAACCCTCAAATTCCAAGGAAAAAAACATTCCGGGAAAAAACACTGAGAAAGTGCGCGAATTCAGTGGGCGGAACCTAAATTGCAAACTGTACAAAATTTTGCCGCACAGTTTTCTCGCACATTTTTGCACGGTCATGACACAAACTGTGCGGCAAAACCGTGCGCAGCTTGCAATTTGAGCTCTGCCCACTTTTTGCAAGGACATTTTTTCTTGGAATTTAAGAAGCCGCTGCTCGGTCATGTCCTGTTACATATACTCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10166</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>34177</contig_pos>
        <strand>+</strand>
        <context>ACCCAAGTCT[A/G]AAATTATCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAGACCTACGATTATGGTACCCAAATTAGAATTATGGTACCCAAGTCT</left_flank>
        <right_flank>AAATTATCATTCTCAAAACTGGAATTATGGCACCCAAATCTAGAATTATG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGAAAATGAAAATCTCTAATTTCAGCACTTCCACACCGGAATTGACACTCTTCCCTTTTCCCCAGCTCATCCTTCTTCCTCCTCCGTCAAAAATCTTATTTTCAGAATTCCTTTTTCTATTTTCAGATTATTCGATTCCAAATTAAGATTTTCAAATTATTTTGGATCACATCCCCCACACAATTTTTTTTGTTTGAAGAAAAACTTCCTCAAAAGTATCTAAATCTTTTTTTCATTCAGAATTTCCGAATAACCAATACATCATGTTTTGCCGAAGATTCTCTTCAAATGATGCCAATTTCGATCGGGGTCTCGATGGAGAATCTATGTTTTGCACCCTATGAAATCACGCAGAAGAGAAATGGCCAAAAATTGGAGATCCGAATTTGCAGAATAGGATTTTTTAGGATTCTAAATTTTGAAAATTCAGATTTTAGGAGTCGTGGTCAGAAGACCTACGATTATGGTACCCAAATTAGAATTATGGTACCCAAGTCTGAAATTATCATTCTCAAAACTGGAATTATGGCACCCAAATCTAGAATTATGATACCTAAATTTAGGCTTATGGTACCCAAATCTAGAACTATGGTACCCAGAATTATTTTTTTCAAGAATTCTAAAAATGTGTTTTTTGGTCTTTGTACAAAAACCAACAACTCCTCCGCTCTCTTTTTCTGTTGGAATGTGTCATGTTCAATACTTCCATTTTTCCCATTTTTTGGAAAAAAAAAGAAAAAAAAAAGAAAATTGAATGGAGTTCATTTTGAACTTTTTTCTGGGAGTAGACAGAAAGTCAAAATTACAAATTTTGGAAGATTAGGGCTTCAAAATGAGTAATACCTGTAGTAGAAGTACCTCACACTGTCAAGTTTGAACTCAGTTATCCTTCAAAATATATCTAAATTTTTGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTTACAGTTGACAACTTTTTCATATCTTTGACAGAAACCGAGATAAATT</canonical>
            <polymorphic>CGGAAAATGAAAATCTCTAATTTCAGCACTTCCACACCGGAATTGACACTCTTCCCTTTTCCCCAGCTCATCCTTCTTCCTCCTCCGTCAAAAATCTTATTTTCAGAATTCCTTTTTCTATTTTCAGATTATTCGATTCCAAATTAAGATTTTCAAATTATTTTGGATCACATCCCCCACACAATTTTTTTTGTTTGAAGAAAAACTTCCTCAAAAGTATCTAAATCTTTTTTTCATTCAGAATTTCCGAATAACCAATACATCATGTTTTGCCGAAGATTCTCTTCAAATGATGCCAATTTCGATCGGGGTCTCGATGGAGAATCTATGTTTTGCACCCTATGAAATCACGCAGAAGAGAAATGGCCAAAAATTGGAGATCCGAATTTGCAGAATAGGATTTTTTAGGATTCTAAATTTTGAAAATTCAGATTTTAGGAGTCGTGGTCAGAAGACCTACGATTATGGTACCCAAATTAGAATTATGGTACCCAAGTCTRAAATTATCATTCTCAAAACTGGAATTATGGCACCCAAATCTAGAATTATGATACCTAAATTTAGGCTTATGGTACCCAAATCTAGAACTATGGTACCCAGAATTATTTTTTTCAAGAATTCTAAAAATGTGTTTTTTGGTCTTTGTACAAAAACCAACAACTCCTCCGCTCTCTTTTTCTGTTGGAATGTGTCATGTTCAATACTTCCATTTTTCCCATTTTTTGGAAAAAAAAAGAAAAAAAAAAGAAAATTGAATGGAGTTCATTTTGAACTTTTTTCTGGGAGTAGACAGAAAGTCAAAATTACAAATTTTGGAAGATTAGGGCTTCAAAATGAGTAATACCTGTAGTAGAAGTACCTCACACTGTCAAGTTTGAACTCAGTTATCCTTCAAAATATATCTAAATTTTTGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTTACAGTTGACAACTTTTTCATATCTTTGACAGAAACCGAGATAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>501 135 114 105 49 47 21 20 8</canonical_bands>
                <polymorphic_bands>550 135 114 105 47 21 20 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGTCAGAAGACCTACGATTAT</pcr_primer_p1>
		<pcr_primer_p2>ACATTCCAACAGAAAAAGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TGGTCAGAAGACCTACGATTATGGTACCCAAATTAGAATTATGGTACCCAAGTCTGAAATTATCATTCTCAAAACTGGAATTATGGCACCCAAATCTAGAATTATGATACCTAAATTTAGGCTTATGGTACCCAAATCTAGAACTATGGTACCCAGAATTATTTTTTTCAAGAATTCTAAAAATGTGTTTTTTGGTCTTTGTACAAAAACCAACAACTCCTCCGCTCTCTTTTTCTGTTGGAATGT</canonical_amplicon>
		<polymorphic_amplicon>TGGTCAGAAGACCTACGATTATGGTACCCAAATTAGAATTATGGTACCCAAGTCTRAAATTATCATTCTCAAAACTGGAATTATGGCACCCAAATCTAGAATTATGATACCTAAATTTAGGCTTATGGTACCCAAATCTAGAACTATGGTACCCAGAATTATTTTTTTCAAGAATTCTAAAAATGTGTTTTTTGGTCTTTGTACAAAAACCAACAACTCCTCCGCTCTCTTTTTCTGTTGGAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10174</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>34412</contig_pos>
        <strand></strand>
        <context>GGaaaaaaaa[A/G]raaaaaaaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATGTGTCATGTTCAATACTTCCATTTTTCCCATTTTTTGGAAAAAAAA</left_flank>
        <right_flank>GAAAAAAAAAAGAAAATTGAATGGAGTTCATTTTGAACTTTTTTCTGGGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCAGAATTTCCGAATAACCAATACATCATGTTTTGCCGAAGATTCTCTTCAAATGATGCCAATTTCGATCGGGGTCTCGATGGAGAATCTATGTTTTGCACCCTATGAAATCACGCAGAAGAGAAATGGCCAAAAATTGGAGATCCGAATTTGCAGAATAGGATTTTTTAGGATTCTAAATTTTGAAAATTCAGATTTTAGGAGTCGTGGTCAGAAGACCTACGATTATGGTACCCAAATTAGAATTATGGTACCCAAGTCTGAAATTATCATTCTCAAAACTGGAATTATGGCACCCAAATCTAGAATTATGATACCTAAATTTAGGCTTATGGTACCCAAATCTAGAACTATGGTACCCAGAATTATTTTTTTCAAGAATTCTAAAAATGTGTTTTTTGGTCTTTGTACAAAAACCAACAACTCCTCCGCTCTCTTTTTCTGTTGGAATGTGTCATGTTCAATACTTCCATTTTTCCCATTTTTTGGAAAAAAAAAGAAAAAAAAAAGAAAATTGAATGGAGTTCATTTTGAACTTTTTTCTGGGAGTAGACAGAAAGTCAAAATTACAAATTTTGGAAGATTAGGGCTTCAAAATGAGTAATACCTGTAGTAGAAGTACCTCACACTGTCAAGTTTGAACTCAGTTATCCTTCAAAATATATCTAAATTTTTGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTTACAGTTGACAACTTTTTCATATCTTTGACAGAAACCGAGATAAATTATCTCGAAGTCAAAAGTCAGGGGGCCCTTATTTTACAGGTTCAACGGTGCCTGGGTTTCAATAAGACCAACATAACAAGGCTCATTTCAATCCTAGCAGTACCCGAATTTAAATTTCAGCGTTGTGACAGCAAATTTAGTCCTTTTAGAGCTTCAAAATGAGTATAAATATGGCCATAATTTTAGAAAAAAATTAAGCAAAACTCAATTAAAAAGGCTGCTATACGAAAATCGCT</canonical>
            <polymorphic>ATTCAGAATTTCCGAATAACCAATACATCATGTTTTGCCGAAGATTCTCTTCAAATGATGCCAATTTCGATCGGGGTCTCGATGGAGAATCTATGTTTTGCACCCTATGAAATCACGCAGAAGAGAAATGGCCAAAAATTGGAGATCCGAATTTGCAGAATAGGATTTTTTAGGATTCTAAATTTTGAAAATTCAGATTTTAGGAGTCGTGGTCAGAAGACCTACGATTATGGTACCCAAATTAGAATTATGGTACCCAAGTCTGAAATTATCATTCTCAAAACTGGAATTATGGCACCCAAATCTAGAATTATGATACCTAAATTTAGGCTTATGGTACCCAAATCTAGAACTATGGTACCCAGAATTATTTTTTTCAAGAATTCTAAAAATGTGTTTTTTGGTCTTTGTACAAAAACCAACAACTCCTCCGCTCTCTTTTTCTGTTGGAATGTGTCATGTTCAATACTTCCATTTTTCCCATTTTTTGGAAAAAAAARGAAAAAAAAAAGAAAATTGAATGGAGTTCATTTTGAACTTTTTTCTGGGAGTAGACAGAAAGTCAAAATTACAAATTTTGGAAGATTAGGGCTTCAAAATGAGTAATACCTGTAGTAGAAGTACCTCACACTGTCAAGTTTGAACTCAGTTATCCTTCAAAATATATCTAAATTTTTGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTTACAGTTGACAACTTTTTCATATCTTTGACAGAAACCGAGATAAATTATCTCGAAGTCAAAAGTCAGGGGGCCCTTATTTTACAGGTTCAACGGTGCCTGGGTTTCAATAAGACCAACATAACAAGGCTCATTTCAATCCTAGCAGTACCCGAATTTAAATTTCAGCGTTGTGACAGCAAATTTAGTCCTTTTAGAGCTTCAAAATGAGTATAAATATGGCCATAATTTTAGAAAAAAATTAAGCAAAACTCAATTAAAAAGGCTGCTATACGAAAATCGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTACCCAAATCTAGAACTATG</pcr_primer_p1>
		<pcr_primer_p2>AAATTTGTAATTTTGACTTTCTGTC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TGGTACCCAAATCTAGAACTATGGTACCCAGAATTATTTTTTTCAAGAATTCTAAAAATGTGTTTTTTGGTCTTTGTACAAAAACCAACAACTCCTCCGCTCTCTTTTTCTGTTGGAATGTGTCATGTTCAATACTTCCATTTTTCCCATTTTTTGGAAAAAAAAAGAAAAAAAAAAGAAAATTGAATGGAGTTCATTTTGAACTTTTTTCTGGGAGTAGACAGAAAGTCAAAATTACAAATTT</canonical_amplicon>
		<polymorphic_amplicon>TGGTACCCAAATCTAGAACTATGGTACCCAGAATTATTTTTTTCAAGAATTCTAAAAATGTGTTTTTTGGTCTTTGTACAAAAACCAACAACTCCTCCGCTCTCTTTTTCTGTTGGAATGTGTCATGTTCAATACTTCCATTTTTCCCATTTTTTGGAAAAAAAARGAAAAAAAAAAGAAAATTGAATGGAGTTCATTTTGAACTTTTTTCTGGGAGTAGACAGAAAGTCAAAATTACAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10175</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>34413</contig_pos>
        <strand></strand>
        <context>Gaaaaaaaar[G/A]aaaaaaaaar</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATGTGTCATGTTCAATACTTCCATTTTTCCCATTTTTTGGAAAAAAAAA</left_flank>
        <right_flank>AAAAAAAAAAGAAAATTGAATGGAGTTCATTTTGAACTTTTTTCTGGGAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAGAATTTCCGAATAACCAATACATCATGTTTTGCCGAAGATTCTCTTCAAATGATGCCAATTTCGATCGGGGTCTCGATGGAGAATCTATGTTTTGCACCCTATGAAATCACGCAGAAGAGAAATGGCCAAAAATTGGAGATCCGAATTTGCAGAATAGGATTTTTTAGGATTCTAAATTTTGAAAATTCAGATTTTAGGAGTCGTGGTCAGAAGACCTACGATTATGGTACCCAAATTAGAATTATGGTACCCAAGTCTGAAATTATCATTCTCAAAACTGGAATTATGGCACCCAAATCTAGAATTATGATACCTAAATTTAGGCTTATGGTACCCAAATCTAGAACTATGGTACCCAGAATTATTTTTTTCAAGAATTCTAAAAATGTGTTTTTTGGTCTTTGTACAAAAACCAACAACTCCTCCGCTCTCTTTTTCTGTTGGAATGTGTCATGTTCAATACTTCCATTTTTCCCATTTTTTGGAAAAAAAAAGAAAAAAAAAAGAAAATTGAATGGAGTTCATTTTGAACTTTTTTCTGGGAGTAGACAGAAAGTCAAAATTACAAATTTTGGAAGATTAGGGCTTCAAAATGAGTAATACCTGTAGTAGAAGTACCTCACACTGTCAAGTTTGAACTCAGTTATCCTTCAAAATATATCTAAATTTTTGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTTACAGTTGACAACTTTTTCATATCTTTGACAGAAACCGAGATAAATTATCTCGAAGTCAAAAGTCAGGGGGCCCTTATTTTACAGGTTCAACGGTGCCTGGGTTTCAATAAGACCAACATAACAAGGCTCATTTCAATCCTAGCAGTACCCGAATTTAAATTTCAGCGTTGTGACAGCAAATTTAGTCCTTTTAGAGCTTCAAAATGAGTATAAATATGGCCATAATTTTAGAAAAAAATTAAGCAAAACTCAATTAAAAAGGCTGCTATACGAAAATCGCTA</canonical>
            <polymorphic>TTCAGAATTTCCGAATAACCAATACATCATGTTTTGCCGAAGATTCTCTTCAAATGATGCCAATTTCGATCGGGGTCTCGATGGAGAATCTATGTTTTGCACCCTATGAAATCACGCAGAAGAGAAATGGCCAAAAATTGGAGATCCGAATTTGCAGAATAGGATTTTTTAGGATTCTAAATTTTGAAAATTCAGATTTTAGGAGTCGTGGTCAGAAGACCTACGATTATGGTACCCAAATTAGAATTATGGTACCCAAGTCTGAAATTATCATTCTCAAAACTGGAATTATGGCACCCAAATCTAGAATTATGATACCTAAATTTAGGCTTATGGTACCCAAATCTAGAACTATGGTACCCAGAATTATTTTTTTCAAGAATTCTAAAAATGTGTTTTTTGGTCTTTGTACAAAAACCAACAACTCCTCCGCTCTCTTTTTCTGTTGGAATGTGTCATGTTCAATACTTCCATTTTTCCCATTTTTTGGAAAAAAAAARAAAAAAAAAAGAAAATTGAATGGAGTTCATTTTGAACTTTTTTCTGGGAGTAGACAGAAAGTCAAAATTACAAATTTTGGAAGATTAGGGCTTCAAAATGAGTAATACCTGTAGTAGAAGTACCTCACACTGTCAAGTTTGAACTCAGTTATCCTTCAAAATATATCTAAATTTTTGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTTACAGTTGACAACTTTTTCATATCTTTGACAGAAACCGAGATAAATTATCTCGAAGTCAAAAGTCAGGGGGCCCTTATTTTACAGGTTCAACGGTGCCTGGGTTTCAATAAGACCAACATAACAAGGCTCATTTCAATCCTAGCAGTACCCGAATTTAAATTTCAGCGTTGTGACAGCAAATTTAGTCCTTTTAGAGCTTCAAAATGAGTATAAATATGGCCATAATTTTAGAAAAAAATTAAGCAAAACTCAATTAAAAAGGCTGCTATACGAAAATCGCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTACCCAAATCTAGAACTATG</pcr_primer_p1>
		<pcr_primer_p2>AAATTTGTAATTTTGACTTTCTGTC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TGGTACCCAAATCTAGAACTATGGTACCCAGAATTATTTTTTTCAAGAATTCTAAAAATGTGTTTTTTGGTCTTTGTACAAAAACCAACAACTCCTCCGCTCTCTTTTTCTGTTGGAATGTGTCATGTTCAATACTTCCATTTTTCCCATTTTTTGGAAAAAAAAAGAAAAAAAAAAGAAAATTGAATGGAGTTCATTTTGAACTTTTTTCTGGGAGTAGACAGAAAGTCAAAATTACAAATTT</canonical_amplicon>
		<polymorphic_amplicon>TGGTACCCAAATCTAGAACTATGGTACCCAGAATTATTTTTTTCAAGAATTCTAAAAATGTGTTTTTTGGTCTTTGTACAAAAACCAACAACTCCTCCGCTCTCTTTTTCTGTTGGAATGTGTCATGTTCAATACTTCCATTTTTCCCATTTTTTGGAAAAAAAAARAAAAAAAAAAGAAAATTGAATGGAGTTCATTTTGAACTTTTTTCTGGGAGTAGACAGAAAGTCAAAATTACAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10185</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>34423</contig_pos>
        <strand></strand>
        <context>raaaaaaaaa[A/G]gaaaaTTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTCAATACTTCCATTTTTCCCATTTTTTGGAAAAAAAAAGAAAAAAAAA</left_flank>
        <right_flank>GAAAATTGAATGGAGTTCATTTTGAACTTTTTTCTGGGAGTAGACAGAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGAATAACCAATACATCATGTTTTGCCGAAGATTCTCTTCAAATGATGCCAATTTCGATCGGGGTCTCGATGGAGAATCTATGTTTTGCACCCTATGAAATCACGCAGAAGAGAAATGGCCAAAAATTGGAGATCCGAATTTGCAGAATAGGATTTTTTAGGATTCTAAATTTTGAAAATTCAGATTTTAGGAGTCGTGGTCAGAAGACCTACGATTATGGTACCCAAATTAGAATTATGGTACCCAAGTCTGAAATTATCATTCTCAAAACTGGAATTATGGCACCCAAATCTAGAATTATGATACCTAAATTTAGGCTTATGGTACCCAAATCTAGAACTATGGTACCCAGAATTATTTTTTTCAAGAATTCTAAAAATGTGTTTTTTGGTCTTTGTACAAAAACCAACAACTCCTCCGCTCTCTTTTTCTGTTGGAATGTGTCATGTTCAATACTTCCATTTTTCCCATTTTTTGGAAAAAAAAAGAAAAAAAAAAGAAAATTGAATGGAGTTCATTTTGAACTTTTTTCTGGGAGTAGACAGAAAGTCAAAATTACAAATTTTGGAAGATTAGGGCTTCAAAATGAGTAATACCTGTAGTAGAAGTACCTCACACTGTCAAGTTTGAACTCAGTTATCCTTCAAAATATATCTAAATTTTTGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTTACAGTTGACAACTTTTTCATATCTTTGACAGAAACCGAGATAAATTATCTCGAAGTCAAAAGTCAGGGGGCCCTTATTTTACAGGTTCAACGGTGCCTGGGTTTCAATAAGACCAACATAACAAGGCTCATTTCAATCCTAGCAGTACCCGAATTTAAATTTCAGCGTTGTGACAGCAAATTTAGTCCTTTTAGAGCTTCAAAATGAGTATAAATATGGCCATAATTTTAGAAAAAAATTAAGCAAAACTCAATTAAAAAGGCTGCTATACGAAAATCGCTATAACTTGGTT</canonical>
            <polymorphic>CCGAATAACCAATACATCATGTTTTGCCGAAGATTCTCTTCAAATGATGCCAATTTCGATCGGGGTCTCGATGGAGAATCTATGTTTTGCACCCTATGAAATCACGCAGAAGAGAAATGGCCAAAAATTGGAGATCCGAATTTGCAGAATAGGATTTTTTAGGATTCTAAATTTTGAAAATTCAGATTTTAGGAGTCGTGGTCAGAAGACCTACGATTATGGTACCCAAATTAGAATTATGGTACCCAAGTCTGAAATTATCATTCTCAAAACTGGAATTATGGCACCCAAATCTAGAATTATGATACCTAAATTTAGGCTTATGGTACCCAAATCTAGAACTATGGTACCCAGAATTATTTTTTTCAAGAATTCTAAAAATGTGTTTTTTGGTCTTTGTACAAAAACCAACAACTCCTCCGCTCTCTTTTTCTGTTGGAATGTGTCATGTTCAATACTTCCATTTTTCCCATTTTTTGGAAAAAAAAAGAAAAAAAAARGAAAATTGAATGGAGTTCATTTTGAACTTTTTTCTGGGAGTAGACAGAAAGTCAAAATTACAAATTTTGGAAGATTAGGGCTTCAAAATGAGTAATACCTGTAGTAGAAGTACCTCACACTGTCAAGTTTGAACTCAGTTATCCTTCAAAATATATCTAAATTTTTGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTTACAGTTGACAACTTTTTCATATCTTTGACAGAAACCGAGATAAATTATCTCGAAGTCAAAAGTCAGGGGGCCCTTATTTTACAGGTTCAACGGTGCCTGGGTTTCAATAAGACCAACATAACAAGGCTCATTTCAATCCTAGCAGTACCCGAATTTAAATTTCAGCGTTGTGACAGCAAATTTAGTCCTTTTAGAGCTTCAAAATGAGTATAAATATGGCCATAATTTTAGAAAAAAATTAAGCAAAACTCAATTAAAAAGGCTGCTATACGAAAATCGCTATAACTTGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTACCCAAATCTAGAACTATG</pcr_primer_p1>
		<pcr_primer_p2>AAATTTGTAATTTTGACTTTCTGTC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TGGTACCCAAATCTAGAACTATGGTACCCAGAATTATTTTTTTCAAGAATTCTAAAAATGTGTTTTTTGGTCTTTGTACAAAAACCAACAACTCCTCCGCTCTCTTTTTCTGTTGGAATGTGTCATGTTCAATACTTCCATTTTTCCCATTTTTTGGAAAAAAAAAGAAAAAAAAAAGAAAATTGAATGGAGTTCATTTTGAACTTTTTTCTGGGAGTAGACAGAAAGTCAAAATTACAAATTT</canonical_amplicon>
		<polymorphic_amplicon>TGGTACCCAAATCTAGAACTATGGTACCCAGAATTATTTTTTTCAAGAATTCTAAAAATGTGTTTTTTGGTCTTTGTACAAAAACCAACAACTCCTCCGCTCTCTTTTTCTGTTGGAATGTGTCATGTTCAATACTTCCATTTTTCCCATTTTTTGGAAAAAAAAAGAAAAAAAAARGAAAATTGAATGGAGTTCATTTTGAACTTTTTTCTGGGAGTAGACAGAAAGTCAAAATTACAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10191</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>36499</contig_pos>
        <strand></strand>
        <context>GCATGAGAAG[C/A]GCTTTAAATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTCTTGTTCAAATCGGATAAAATCTAAATCTTCAAGTTTAGCATGAGAAG</left_flank>
        <right_flank>GCTTTAAATGATTATAGTCTTAATTCGGTTTCGGAAATTTTGAAGTACCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTCACACTTTGAGCTCAATTATCTCGACTCCTATAAAAGATATCGAAAATTTGCCAATTGATAAAATATTGCTGATAATATGATAAATAATTTATCATTTGACACCTTTTTGATATCTGTTACAGGAAATGGGATAAATGAGCTCAAAGAGCACTGGGATTCTATTAAAGAATTTACGGCGACTAAATTAATCTAGCCTAAAAAACGGCTACATTTAGCTTGAAACTCACCAATTTTTAGTCCATAACAATTTTTTAAAAACTCACAATCAAGTCCGCAACTGCCAAGGAGAAGATCAGATAATACTGTGGTCGTCCTCTCAAATCCCTTTCCATGATGATCGCCAAAATCACAAATAGGTTACCAATGAAACAGGAGAGTATGAGCAATAGCAGCACTGACGCAAGGATCACAGTCTGAAAATTAAAAGTGTTATAACTCAATCAGTTCTTGTTCAAATCGGATAAAATCTAAATCTTCAAGTTTAGCATGAGAAGCGCTTTAAATGATTATAGTCTTAATTCGGTTTCGGAAATTTTGAAGTACCATCAAACCTGCCTCGAGTTTGAGCACAATTATCTCGGCTCCTTTGAGAGCTTTTATAAATTTGTCAACTAATAAAATATTGCTGATAATGTGATTAACAATTTATTCTCGGGGTTCATTTAATTGAGTACAATTAAGACCACCAAGGTGATCGCTGAGAATTTAGAATCCAAAATTTAGAAATCCAGTTCGGACCTTTTTAAAGGTTCCTGAAGTCTTAAAAAGATCCCAATTTTGAATCCTGGATCCTTGGATCCCTTACCTGCACCAACGGTCTCTCGACATCACTAAAAATCTCGGCATGTGCTGGAAACTGATCTACCAGATGTGTTCCCCTGGCGGCCGCCGACAGAATCGTCTGCGGTGTGATCGCCGCCGTCGAAGACGACGTCGTGAAATTCCAAAACTGCTCGTCGATCATCATCTTCATCACGATTCATCGTCTCATCACG</canonical>
            <polymorphic>CTGTCACACTTTGAGCTCAATTATCTCGACTCCTATAAAAGATATCGAAAATTTGCCAATTGATAAAATATTGCTGATAATATGATAAATAATTTATCATTTGACACCTTTTTGATATCTGTTACAGGAAATGGGATAAATGAGCTCAAAGAGCACTGGGATTCTATTAAAGAATTTACGGCGACTAAATTAATCTAGCCTAAAAAACGGCTACATTTAGCTTGAAACTCACCAATTTTTAGTCCATAACAATTTTTTAAAAACTCACAATCAAGTCCGCAACTGCCAAGGAGAAGATCAGATAATACTGTGGTCGTCCTCTCAAATCCCTTTCCATGATGATCGCCAAAATCACAAATAGGTTACCAATGAAACAGGAGAGTATGAGCAATAGCAGCACTGACGCAAGGATCACAGTCTGAAAATTAAAAGTGTTATAACTCAATCAGTTCTTGTTCAAATCGGATAAAATCTAAATCTTCAAGTTTAGCATGAGAAGMGCTTTAAATGATTATAGTCTTAATTCGGTTTCGGAAATTTTGAAGTACCATCAAACCTGCCTCGAGTTTGAGCACAATTATCTCGGCTCCTTTGAGAGCTTTTATAAATTTGTCAACTAATAAAATATTGCTGATAATGTGATTAACAATTTATTCTCGGGGTTCATTTAATTGAGTACAATTAAGACCACCAAGGTGATCGCTGAGAATTTAGAATCCAAAATTTAGAAATCCAGTTCGGACCTTTTTAAAGGTTCCTGAAGTCTTAAAAAGATCCCAATTTTGAATCCTGGATCCTTGGATCCCTTACCTGCACCAACGGTCTCTCGACATCACTAAAAATCTCGGCATGTGCTGGAAACTGATCTACCAGATGTGTTCCCCTGGCGGCCGCCGACAGAATCGTCTGCGGTGTGATCGCCGCCGTCGAAGACGACGTCGTGAAATTCCAAAACTGCTCGTCGATCATCATCTTCATCACGATTCATCGTCTCATCACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCGCT</site>
                <isoschizomers>
                    <enzyme>AfeI</enzyme>
                    <enzyme>Aor51HI</enzyme>
                    <enzyme>Eco47III</enzyme>
                    <enzyme>FunI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 244 150 102</canonical_bands>
                <polymorphic_bands>606 244 150</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTCTTGTTCAAATCGGATAA</pcr_primer_p1>
		<pcr_primer_p2>ACCTTGGTGGTCTTAATTGTACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTTCTTGTTCAAATCGGATAAAATCTAAATCTTCAAGTTTAGCATGAGAAGCGCTTTAAATGATTATAGTCTTAATTCGGTTTCGGAAATTTTGAAGTACCATCAAACCTGCCTCGAGTTTGAGCACAATTATCTCGGCTCCTTTGAGAGCTTTTATAAATTTGTCAACTAATAAAATATTGCTGATAATGTGATTAACAATTTATTCTCGGGGTTCATTTAATTGAGTACAATTAAGACCACCAAGGT</canonical_amplicon>
		<polymorphic_amplicon>AGTTCTTGTTCAAATCGGATAAAATCTAAATCTTCAAGTTTAGCATGAGAAGMGCTTTAAATGATTATAGTCTTAATTCGGTTTCGGAAATTTTGAAGTACCATCAAACCTGCCTCGAGTTTGAGCACAATTATCTCGGCTCCTTTGAGAGCTTTTATAAATTTGTCAACTAATAAAATATTGCTGATAATGTGATTAACAATTTATTCTCGGGGTTCATTTAATTGAGTACAATTAAGACCACCAAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10192</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>36367</contig_pos>
        <strand></strand>
        <context>ATAGGTTACC[A/G]ATGAAACAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTCTCAAATCCCTTTCCATGATGATCGCCAAAATCACAAATAGGTTACC</left_flank>
        <right_flank>ATGAAACAGGAGAGTATGAGCAATAGCAGCACTGACGCAAGGATCACAGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATCATAACATCACAAACATTTTATCAGTTGACAATATTTTGAAATCTCTTCCAGGGACGGATATAATGAGGTACAAAGTGATAAGCCCCTCTCCCTCCCCCTTTTTCTATGGTGGTGGTGTTTTGTTAGACTGTCACACTTTGAGCTCAATTATCTCGACTCCTATAAAAGATATCGAAAATTTGCCAATTGATAAAATATTGCTGATAATATGATAAATAATTTATCATTTGACACCTTTTTGATATCTGTTACAGGAAATGGGATAAATGAGCTCAAAGAGCACTGGGATTCTATTAAAGAATTTACGGCGACTAAATTAATCTAGCCTAAAAAACGGCTACATTTAGCTTGAAACTCACCAATTTTTAGTCCATAACAATTTTTTAAAAACTCACAATCAAGTCCGCAACTGCCAAGGAGAAGATCAGATAATACTGTGGTCGTCCTCTCAAATCCCTTTCCATGATGATCGCCAAAATCACAAATAGGTTACCAATGAAACAGGAGAGTATGAGCAATAGCAGCACTGACGCAAGGATCACAGTCTGAAAATTAAAAGTGTTATAACTCAATCAGTTCTTGTTCAAATCGGATAAAATCTAAATCTTCAAGTTTAGCATGAGAAGCGCTTTAAATGATTATAGTCTTAATTCGGTTTCGGAAATTTTGAAGTACCATCAAACCTGCCTCGAGTTTGAGCACAATTATCTCGGCTCCTTTGAGAGCTTTTATAAATTTGTCAACTAATAAAATATTGCTGATAATGTGATTAACAATTTATTCTCGGGGTTCATTTAATTGAGTACAATTAAGACCACCAAGGTGATCGCTGAGAATTTAGAATCCAAAATTTAGAAATCCAGTTCGGACCTTTTTAAAGGTTCCTGAAGTCTTAAAAAGATCCCAATTTTGAATCCTGGATCCTTGGATCCCTTACCTGCACCAACGGTCTCTCGACATCACTAAAAATCTCGGCATGTGCTGGAAACTGATCT</canonical>
            <polymorphic>TTATCATAACATCACAAACATTTTATCAGTTGACAATATTTTGAAATCTCTTCCAGGGACGGATATAATGAGGTACAAAGTGATAAGCCCCTCTCCCTCCCCCTTTTTCTATGGTGGTGGTGTTTTGTTAGACTGTCACACTTTGAGCTCAATTATCTCGACTCCTATAAAAGATATCGAAAATTTGCCAATTGATAAAATATTGCTGATAATATGATAAATAATTTATCATTTGACACCTTTTTGATATCTGTTACAGGAAATGGGATAAATGAGCTCAAAGAGCACTGGGATTCTATTAAAGAATTTACGGCGACTAAATTAATCTAGCCTAAAAAACGGCTACATTTAGCTTGAAACTCACCAATTTTTAGTCCATAACAATTTTTTAAAAACTCACAATCAAGTCCGCAACTGCCAAGGAGAAGATCAGATAATACTGTGGTCGTCCTCTCAAATCCCTTTCCATGATGATCGCCAAAATCACAAATAGGTTACCRATGAAACAGGAGAGTATGAGCAATAGCAGCACTGACGCAAGGATCACAGTCTGAAAATTAAAAGTGTTATAACTCAATCAGTTCTTGTTCAAATCGGATAAAATCTAAATCTTCAAGTTTAGCATGAGAAGCGCTTTAAATGATTATAGTCTTAATTCGGTTTCGGAAATTTTGAAGTACCATCAAACCTGCCTCGAGTTTGAGCACAATTATCTCGGCTCCTTTGAGAGCTTTTATAAATTTGTCAACTAATAAAATATTGCTGATAATGTGATTAACAATTTATTCTCGGGGTTCATTTAATTGAGTACAATTAAGACCACCAAGGTGATCGCTGAGAATTTAGAATCCAAAATTTAGAAATCCAGTTCGGACCTTTTTAAAGGTTCCTGAAGTCTTAAAAAGATCCCAATTTTGAATCCTGGATCCTTGGATCCCTTACCTGCACCAACGGTCTCTCGACATCACTAAAAATCTCGGCATGTGCTGGAAACTGATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCACCAATTTTTAGTCCATAA</pcr_primer_p1>
		<pcr_primer_p2>TTAGATTTTATCCGATTTGAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTCACCAATTTTTAGTCCATAACAATTTTTTAAAAACTCACAATCAAGTCCGCAACTGCCAAGGAGAAGATCAGATAATACTGTGGTCGTCCTCTCAAATCCCTTTCCATGATGATCGCCAAAATCACAAATAGGTTACCAATGAAACAGGAGAGTATGAGCAATAGCAGCACTGACGCAAGGATCACAGTCTGAAAATTAAAAGTGTTATAACTCAATCAGTTCTTGTTCAAATCGGATAAAATCTAA</canonical_amplicon>
		<polymorphic_amplicon>ACTCACCAATTTTTAGTCCATAACAATTTTTTAAAAACTCACAATCAAGTCCGCAACTGCCAAGGAGAAGATCAGATAATACTGTGGTCGTCCTCTCAAATCCCTTTCCATGATGATCGCCAAAATCACAAATAGGTTACCRATGAAACAGGAGAGTATGAGCAATAGCAGCACTGACGCAAGGATCACAGTCTGAAAATTAAAAGTGTTATAACTCAATCAGTTCTTGTTCAAATCGGATAAAATCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10194</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>181818</contig_pos>
        <strand>+</strand>
        <context>AAAAATCCAG[A/G]TTCTCGAGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCGGAGACTTTTTGCTGAAAAAAAAAACTACAGTAATCCAAAAATCCAG</left_flank>
        <right_flank>TTCTCGAGAGTATTACCTTAAGGCTTGTAACCGGGTCACATCTAGATGTG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCATAAATAGCAGATAAATTTGATTTTCGAACTTAAAAAAAATGCAAAAATCGATATTTCAATCATAAAATTTGTCGCAAGACATAAAAATGTGTTTTTTGAATAGAAAATGCTGAAAATATTTTTTTTAAAAACGAAGAATTTTCAGTTTTGGCGGGAATTTGGAAAAAATTCGAGAAAATTCTGTTAACACCTATTTTCTCTTCCGCTTCCCCTAATGACGTATGAAGTGCGAAAAATGGGGCGGAGTTTCCCAAGGGGGCGGGATTAGTCGATTTGTTTTAAAATATGTATTTCCCTGAAAAATCTAGCTGCCAAAATATCTAAATTTCAATAAAAATTCCAAAAAAATCTTTATCAACAATTTTTAAAAATGTAGATCACAACAATTCATCAGTATCATCATTCAAACTGGACGTTTCGAAACTGGTATGTGCTTGCTTTTGAAGCGGAGACTTTTTGCTGAAAAAAAAAACTACAGTAATCCAAAAATCCAGGTTCTCGAGAGTATTACCTTAAGGCTTGTAACCGGGTCACATCTAGATGTGTAGTATCGATTGATTTGGATTTCGAAAGACGGGAGGCTTTGACTTTTAGGTTGTTCCAGCTCAGTTTTGAGGTGCTCGGGAGGAATGAAAGTTTTCTGAAATGAAATTAAATTGCGCTAAAATTACCATAACTCTGAGGTCAATTATCTCTGTTCCTATGAAAGATAACAAAAAGTGGTTAACTGATAAAATAGTTCTGATATTATGATTAACATTTTATCAGTTACCCACTTTTTGGTATCTTTCGAAAGAAATGAGATATATGCTCTCAAAGTTGCCGGCTTGGATAATTTCAAAAACTCACAATCTGCCATTGGAATGTATAGAGGATATACTCATATTCCTTTGACCAGACTGAAACATTTGAGGTACTGGAAACTCTTGGTGGAGAAGAGCCGAATTTTTGAGACGACGTTCCGCCATCGCGGTTTTTTTCTTGTTTCGAGCTGA</canonical>
            <polymorphic>TTTCATAAATAGCAGATAAATTTGATTTTCGAACTTAAAAAAAATGCAAAAATCGATATTTCAATCATAAAATTTGTCGCAAGACATAAAAATGTGTTTTTTGAATAGAAAATGCTGAAAATATTTTTTTTAAAAACGAAGAATTTTCAGTTTTGGCGGGAATTTGGAAAAAATTCGAGAAAATTCTGTTAACACCTATTTTCTCTTCCGCTTCCCCTAATGACGTATGAAGTGCGAAAAATGGGGCGGAGTTTCCCAAGGGGGCGGGATTAGTCGATTTGTTTTAAAATATGTATTTCCCTGAAAAATCTAGCTGCCAAAATATCTAAATTTCAATAAAAATTCCAAAAAAATCTTTATCAACAATTTTTAAAAATGTAGATCACAACAATTCATCAGTATCATCATTCAAACTGGACGTTTCGAAACTGGTATGTGCTTGCTTTTGAAGCGGAGACTTTTTGCTGAAAAAAAAAACTACAGTAATCCAAAAATCCAGRTTCTCGAGAGTATTACCTTAAGGCTTGTAACCGGGTCACATCTAGATGTGTAGTATCGATTGATTTGGATTTCGAAAGACGGGAGGCTTTGACTTTTAGGTTGTTCCAGCTCAGTTTTGAGGTGCTCGGGAGGAATGAAAGTTTTCTGAAATGAAATTAAATTGCGCTAAAATTACCATAACTCTGAGGTCAATTATCTCTGTTCCTATGAAAGATAACAAAAAGTGGTTAACTGATAAAATAGTTCTGATATTATGATTAACATTTTATCAGTTACCCACTTTTTGGTATCTTTCGAAAGAAATGAGATATATGCTCTCAAAGTTGCCGGCTTGGATAATTTCAAAAACTCACAATCTGCCATTGGAATGTATAGAGGATATACTCATATTCCTTTGACCAGACTGAAACATTTGAGGTACTGGAAACTCTTGGTGGAGAAGAGCCGAATTTTTGAGACGACGTTCCGCCATCGCGGTTTTTTTCTTGTTTCGAGCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>497 468 35</canonical_bands>
                <polymorphic_bands>532 468</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATTCAAACTGGACGTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTCATTTCAGAAAACTTTCATTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCATTCAAACTGGACGTTTCGAAACTGGTATGTGCTTGCTTTTGAAGCGGAGACTTTTTGCTGAAAAAAAAAACTACAGTAATCCAAAAATCCAGGTTCTCGAGAGTATTACCTTAAGGCTTGTAACCGGGTCACATCTAGATGTGTAGTATCGATTGATTTGGATTTCGAAAGACGGGAGGCTTTGACTTTTAGGTTGTTCCAGCTCAGTTTTGAGGTGCTCGGGAGGAATGAAAGTTTTCTGAAATGAA</canonical_amplicon>
		<polymorphic_amplicon>TCATTCAAACTGGACGTTTCGAAACTGGTATGTGCTTGCTTTTGAAGCGGAGACTTTTTGCTGAAAAAAAAAACTACAGTAATCCAAAAATCCAGRTTCTCGAGAGTATTACCTTAAGGCTTGTAACCGGGTCACATCTAGATGTGTAGTATCGATTGATTTGGATTTCGAAAGACGGGAGGCTTTGACTTTTAGGTTGTTCCAGCTCAGTTTTGAGGTGCTCGGGAGGAATGAAAGTTTTCTGAAATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10195</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>182323</contig_pos>
        <strand>+</strand>
        <context>AGCTGAAAAT[G/T]TTCTTTTTYT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAGACGACGTTCCGCCATCGCGGTTTTTTTCTTGTTTCGAGCTGAAAAT</left_flank>
        <right_flank>TTCTTTTTTTTCTGAAAATTTCGATTTTCAAAAATTATTACACGACGTCT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAGTATTACCTTAAGGCTTGTAACCGGGTCACATCTAGATGTGTAGTATCGATTGATTTGGATTTCGAAAGACGGGAGGCTTTGACTTTTAGGTTGTTCCAGCTCAGTTTTGAGGTGCTCGGGAGGAATGAAAGTTTTCTGAAATGAAATTAAATTGCGCTAAAATTACCATAACTCTGAGGTCAATTATCTCTGTTCCTATGAAAGATAACAAAAAGTGGTTAACTGATAAAATAGTTCTGATATTATGATTAACATTTTATCAGTTACCCACTTTTTGGTATCTTTCGAAAGAAATGAGATATATGCTCTCAAAGTTGCCGGCTTGGATAATTTCAAAAACTCACAATCTGCCATTGGAATGTATAGAGGATATACTCATATTCCTTTGACCAGACTGAAACATTTGAGGTACTGGAAACTCTTGGTGGAGAAGAGCCGAATTTTTGAGACGACGTTCCGCCATCGCGGTTTTTTTCTTGTTTCGAGCTGAAAATGTTCTTTTTTTTCTGAAAATTTCGATTTTCAAAAATTATTACACGACGTCTTCTGATTGATATCGGTATGACCTGTCTGGTAGCCAGCGTTTCGAAGGATTCCAAGAAGTTCGTAGCGAAACGCGCTGATGTCCTGAAAATTGCGATTTTTTGGATTTCTTGATTATTTCGAAATTAAAAAACTCCAAAAATCAATTCTCGGAGAGCCAAGTTAGTGTATATTTTTAGCTCAATTATCTCGATTTCTGTAAAAGATATCAAAAAGTGGCCAACCGAGAAAATGTTTATCATAATATCCTTAACATTTTATCAGTTTACCACTTTTTGATATCTCTCATAAGAAAAAAAATCTAGGTCACGACCCAAAAAATCTAGGTCATGACCTAAAAAATATAGGTCATGACCTAAAAAATATAGGTCATGACCTAAAAAATCTAGGTCACGACCTAAAAAATCTCGGTCATGACCTAAAAAATATAGGTCATGGCCTAAAAAATATAG</canonical>
            <polymorphic>GAGAGTATTACCTTAAGGCTTGTAACCGGGTCACATCTAGATGTGTAGTATCGATTGATTTGGATTTCGAAAGACGGGAGGCTTTGACTTTTAGGTTGTTCCAGCTCAGTTTTGAGGTGCTCGGGAGGAATGAAAGTTTTCTGAAATGAAATTAAATTGCGCTAAAATTACCATAACTCTGAGGTCAATTATCTCTGTTCCTATGAAAGATAACAAAAAGTGGTTAACTGATAAAATAGTTCTGATATTATGATTAACATTTTATCAGTTACCCACTTTTTGGTATCTTTCGAAAGAAATGAGATATATGCTCTCAAAGTTGCCGGCTTGGATAATTTCAAAAACTCACAATCTGCCATTGGAATGTATAGAGGATATACTCATATTCCTTTGACCAGACTGAAACATTTGAGGTACTGGAAACTCTTGGTGGAGAAGAGCCGAATTTTTGAGACGACGTTCCGCCATCGCGGTTTTTTTCTTGTTTCGAGCTGAAAATKTTCTTTTTTTTCTGAAAATTTCGATTTTCAAAAATTATTACACGACGTCTTCTGATTGATATCGGTATGACCTGTCTGGTAGCCAGCGTTTCGAAGGATTCCAAGAAGTTCGTAGCGAAACGCGCTGATGTCCTGAAAATTGCGATTTTTTGGATTTCTTGATTATTTCGAAATTAAAAAACTCCAAAAATCAATTCTCGGAGAGCCAAGTTAGTGTATATTTTTAGCTCAATTATCTCGATTTCTGTAAAAGATATCAAAAAGTGGCCAACCGAGAAAATGTTTATCATAATATCCTTAACATTTTATCAGTTTACCACTTTTTGATATCTCTCATAAGAAAAAAAATCTAGGTCACGACCCAAAAAATCTAGGTCATGACCTAAAAAATATAGGTCATGACCTAAAAAATATAGGTCATGACCTAAAAAATCTAGGTCACGACCTAAAAAATCTCGGTCATGACCTAAAAAATATAGGTCATGGCCTAAAAAATATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGGATAATTTCAAAAACTCAC</pcr_primer_p1>
		<pcr_primer_p2>GTCATACCGATATCAATCAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTTGGATAATTTCAAAAACTCACAATCTGCCATTGGAATGTATAGAGGATATACTCATATTCCTTTGACCAGACTGAAACATTTGAGGTACTGGAAACTCTTGGTGGAGAAGAGCCGAATTTTTGAGACGACGTTCCGCCATCGCGGTTTTTTTCTTGTTTCGAGCTGAAAATGTTCTTTTTTTTCTGAAAATTTCGATTTTCAAAAATTATTACACGACGTCTTCTGATTGATATCGGTATGAC</canonical_amplicon>
		<polymorphic_amplicon>CTTGGATAATTTCAAAAACTCACAATCTGCCATTGGAATGTATAGAGGATATACTCATATTCCTTTGACCAGACTGAAACATTTGAGGTACTGGAAACTCTTGGTGGAGAAGAGCCGAATTTTTGAGACGACGTTCCGCCATCGCGGTTTTTTTCTTGTTTCGAGCTGAAAATKTTCTTTTTTTTCTGAAAATTTCGATTTTCAAAAATTATTACACGACGTCTTCTGATTGATATCGGTATGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10197</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>183707</contig_pos>
        <strand></strand>
        <context>ACCGCATAAG[C/G]AGaccgtata</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCTGAAAATTGAAATTTTAAAAAAATTTGAATCCGTATTACCGCATAAG</left_flank>
        <right_flank>AGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCATGGAATTTGAATTTTCCAAAAGTTTTCAATATCAATTATCTCGGTTGCTGTGAGAGATATCAAGAAGTTGTCTATAAATAAAATATTGCTGATATTATGATAAATATTTTATCAGTTGACAGATTTTTGATATCTTTTACAGGAATCGAGATAATCAAGCTCAAAGTTGGCTGTTCGAGTGGGCTTCTAAGAGAGTAGTACTGTAATCACTGCAAAAACCAAAAACGATAAATTTACAAGTTCCCAAAAACAAAAAACAGGTGTTTTACAATAAAATTGTGCTCTGCAGTGGCTAGTTTCCGCACAGTTCTCTGAAAAATTCAAATTGTTTCTAGATTTCTAAAATTTTGAAAAAATTTTTGAATCCTTTTTTTTTCAAAAAAAAAATCTAATACTCACCCGATAATTGTTCTCTCTATCGTTCACCGATCGCAGAATTTTTTGATTCTGAAAATTGAAATTTTAAAAAAATTTGAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATTTGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTTCTGCTATCTTTCATAGGAACCGAAATATATGCGTTCAAGTTGACAAGTGGGCGCTTGTCGGCTGAGGAGCTACGCGGGCGGCTAACTTTGAGCCAATTTATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATTACTGATAATCTGATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTTGAGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCAAGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCATCTAATGAAATATACTTGATAACCTGATAAAAATTTTA</canonical>
            <polymorphic>ATCATGGAATTTGAATTTTCCAAAAGTTTTCAATATCAATTATCTCGGTTGCTGTGAGAGATATCAAGAAGTTGTCTATAAATAAAATATTGCTGATATTATGATAAATATTTTATCAGTTGACAGATTTTTGATATCTTTTACAGGAATCGAGATAATCAAGCTCAAAGTTGGCTGTTCGAGTGGGCTTCTAAGAGAGTAGTACTGTAATCACTGCAAAAACCAAAAACGATAAATTTACAAGTTCCCAAAAACAAAAAACAGGTGTTTTACAATAAAATTGTGCTCTGCAGTGGCTAGTTTCCGCACAGTTCTCTGAAAAATTCAAATTGTTTCTAGATTTCTAAAATTTTGAAAAAATTTTTGAATCCTTTTTTTTTCAAAAAAAAAATCTAATACTCACCCGATAATTGTTCTCTCTATCGTTCACCGATCGCAGAATTTTTTGATTCTGAAAATTGAAATTTTAAAAAAATTTGAATCCGTATTACCGCATAAGSAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATTTGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTTCTGCTATCTTTCATAGGAACCGAAATATATGCGTTCAAGTTGACAAGTGGGCGCTTGTCGGCTGAGGAGCTACGCGGGCGGCTAACTTTGAGCCAATTTATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATTACTGATAATCTGATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTTGAGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCAAGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCATCTAATGAAATATACTTGATAACCTGATAAAAATTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGTTCTCTCTATCGTTCACC</pcr_primer_p1>
		<pcr_primer_p2>CAAAACTACAACAGCCTAGCA</pcr_primer_p2>
		<pcr_amplicon_size>688</pcr_amplicon_size>
		<canonical_amplicon>ATTGTTCTCTCTATCGTTCACCGATCGCAGAATTTTTTGATTCTGAAAATTGAAATTTTAAAAAAATTTGAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCA</canonical_amplicon>
		<polymorphic_amplicon>ATTGTTCTCTCTATCGTTCACCGATCGCAGAATTTTTTGATTCTGAAAATTGAAATTTTAAAAAAATTTGAATCCGTATTACCGCATAAGSAGACCGTATAAGCTCTAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10198</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>183675</contig_pos>
        <strand>+</strand>
        <context>ATTGAAATTW[A/T]AAAAAAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCTATCGTTCACCGATCGCAGAATTTTTTGATTCTGAAAATTGAAATTT</left_flank>
        <right_flank>AAAAAAATTTGAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGCACAAAAAATTATACCTAATAGTCTCAAATCATGGAATTTGAATTTTCCAAAAGTTTTCAATATCAATTATCTCGGTTGCTGTGAGAGATATCAAGAAGTTGTCTATAAATAAAATATTGCTGATATTATGATAAATATTTTATCAGTTGACAGATTTTTGATATCTTTTACAGGAATCGAGATAATCAAGCTCAAAGTTGGCTGTTCGAGTGGGCTTCTAAGAGAGTAGTACTGTAATCACTGCAAAAACCAAAAACGATAAATTTACAAGTTCCCAAAAACAAAAAACAGGTGTTTTACAATAAAATTGTGCTCTGCAGTGGCTAGTTTCCGCACAGTTCTCTGAAAAATTCAAATTGTTTCTAGATTTCTAAAATTTTGAAAAAATTTTTGAATCCTTTTTTTTTCAAAAAAAAAATCTAATACTCACCCGATAATTGTTCTCTCTATCGTTCACCGATCGCAGAATTTTTTGATTCTGAAAATTGAAATTTTAAAAAAATTTGAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATTTGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTTCTGCTATCTTTCATAGGAACCGAAATATATGCGTTCAAGTTGACAAGTGGGCGCTTGTCGGCTGAGGAGCTACGCGGGCGGCTAACTTTGAGCCAATTTATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATTACTGATAATCTGATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTTGAGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCAAGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCATCTAAT</canonical>
            <polymorphic>TCAGCACAAAAAATTATACCTAATAGTCTCAAATCATGGAATTTGAATTTTCCAAAAGTTTTCAATATCAATTATCTCGGTTGCTGTGAGAGATATCAAGAAGTTGTCTATAAATAAAATATTGCTGATATTATGATAAATATTTTATCAGTTGACAGATTTTTGATATCTTTTACAGGAATCGAGATAATCAAGCTCAAAGTTGGCTGTTCGAGTGGGCTTCTAAGAGAGTAGTACTGTAATCACTGCAAAAACCAAAAACGATAAATTTACAAGTTCCCAAAAACAAAAAACAGGTGTTTTACAATAAAATTGTGCTCTGCAGTGGCTAGTTTCCGCACAGTTCTCTGAAAAATTCAAATTGTTTCTAGATTTCTAAAATTTTGAAAAAATTTTTGAATCCTTTTTTTTTCAAAAAAAAAATCTAATACTCACCCGATAATTGTTCTCTCTATCGTTCACCGATCGCAGAATTTTTTGATTCTGAAAATTGAAATTTWAAAAAAATTTGAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATTTGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTTCTGCTATCTTTCATAGGAACCGAAATATATGCGTTCAAGTTGACAAGTGGGCGCTTGTCGGCTGAGGAGCTACGCGGGCGGCTAACTTTGAGCCAATTTATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATTACTGATAATCTGATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTTGAGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCAAGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCATCTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 224 180 96</canonical_bands>
                <polymorphic_bands>596 224 180</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>499 204 180 96 21</canonical_bands>
                <polymorphic_bands>595 204 180 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGTTCTCTCTATCGTTCACC</pcr_primer_p1>
		<pcr_primer_p2>CAAAACTACAACAGCCTAGCA</pcr_primer_p2>
		<pcr_amplicon_size>688</pcr_amplicon_size>
		<canonical_amplicon>ATTGTTCTCTCTATCGTTCACCGATCGCAGAATTTTTTGATTCTGAAAATTGAAATTTTAAAAAAATTTGAATCCGTAT</canonical_amplicon>
		<polymorphic_amplicon>ATTGTTCTCTCTATCGTTCACCGATCGCAGAATTTTTTGATTCTGAAAATTGAAATTTWAAAAAAATTTGAATCCGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10199</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>183674</contig_pos>
        <strand>+</strand>
        <context>AATTGAAATT[A/T]WAAAAAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTCTATCGTTCACCGATCGCAGAATTTTTTGATTCTGAAAATTGAAATT</left_flank>
        <right_flank>TAAAAAAATTTGAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAGCACAAAAAATTATACCTAATAGTCTCAAATCATGGAATTTGAATTTTCCAAAAGTTTTCAATATCAATTATCTCGGTTGCTGTGAGAGATATCAAGAAGTTGTCTATAAATAAAATATTGCTGATATTATGATAAATATTTTATCAGTTGACAGATTTTTGATATCTTTTACAGGAATCGAGATAATCAAGCTCAAAGTTGGCTGTTCGAGTGGGCTTCTAAGAGAGTAGTACTGTAATCACTGCAAAAACCAAAAACGATAAATTTACAAGTTCCCAAAAACAAAAAACAGGTGTTTTACAATAAAATTGTGCTCTGCAGTGGCTAGTTTCCGCACAGTTCTCTGAAAAATTCAAATTGTTTCTAGATTTCTAAAATTTTGAAAAAATTTTTGAATCCTTTTTTTTTCAAAAAAAAAATCTAATACTCACCCGATAATTGTTCTCTCTATCGTTCACCGATCGCAGAATTTTTTGATTCTGAAAATTGAAATTTTAAAAAAATTTGAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATTTGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTTCTGCTATCTTTCATAGGAACCGAAATATATGCGTTCAAGTTGACAAGTGGGCGCTTGTCGGCTGAGGAGCTACGCGGGCGGCTAACTTTGAGCCAATTTATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATTACTGATAATCTGATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTTGAGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCAAGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCATCTAA</canonical>
            <polymorphic>ATCAGCACAAAAAATTATACCTAATAGTCTCAAATCATGGAATTTGAATTTTCCAAAAGTTTTCAATATCAATTATCTCGGTTGCTGTGAGAGATATCAAGAAGTTGTCTATAAATAAAATATTGCTGATATTATGATAAATATTTTATCAGTTGACAGATTTTTGATATCTTTTACAGGAATCGAGATAATCAAGCTCAAAGTTGGCTGTTCGAGTGGGCTTCTAAGAGAGTAGTACTGTAATCACTGCAAAAACCAAAAACGATAAATTTACAAGTTCCCAAAAACAAAAAACAGGTGTTTTACAATAAAATTGTGCTCTGCAGTGGCTAGTTTCCGCACAGTTCTCTGAAAAATTCAAATTGTTTCTAGATTTCTAAAATTTTGAAAAAATTTTTGAATCCTTTTTTTTTCAAAAAAAAAATCTAATACTCACCCGATAATTGTTCTCTCTATCGTTCACCGATCGCAGAATTTTTTGATTCTGAAAATTGAAATTWTAAAAAAATTTGAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATTTGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTTCTGCTATCTTTCATAGGAACCGAAATATATGCGTTCAAGTTGACAAGTGGGCGCTTGTCGGCTGAGGAGCTACGCGGGCGGCTAACTTTGAGCCAATTTATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATTACTGATAATCTGATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTTGAGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCAAGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCATCTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>376 221 104 87 81 40 26 23 14 11 11 6</canonical_bands>
                <polymorphic_bands>376 221 104 87 81 40 34 26 14 11 6</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 223 180 96</canonical_bands>
                <polymorphic_bands>597 223 180</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>500 203 180 96 21</canonical_bands>
                <polymorphic_bands>596 203 180 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGTTCTCTCTATCGTTCACC</pcr_primer_p1>
		<pcr_primer_p2>CAAAACTACAACAGCCTAGCA</pcr_primer_p2>
		<pcr_amplicon_size>688</pcr_amplicon_size>
		<canonical_amplicon>ATTGTTCTCTCTATCGTTCACCGATCGCAGAATTTTTTGATTCTGAAAATTGAAATTTTAAAAAAATTTGAATCCGTA</canonical_amplicon>
		<polymorphic_amplicon>ATTGTTCTCTCTATCGTTCACCGATCGCAGAATTTTTTGATTCTGAAAATTGAAATTWTAAAAAAATTTGAATCCGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10200</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>202384</contig_pos>
        <strand>+</strand>
        <context>TTAAAGTGGG[C/G]GGAGATTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCGTTTTTTCTATATCTCATGGACCGGTACTGTAGGTATTTAAAGTGGG</left_flank>
        <right_flank>GGAGATTTGAGTGATTTTGACAATAGAAAATTGAAAAAAATTATGCAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTTCCAGAATTTCAGAGTTTTCTAGCTTAAAATTTTTAAAATTTTCAGATTTCTCGGGTCATAGATATCCATTTTTATGAATTTTCAAGTCGAAAATTTCAGATTTTTGAGTTTTTCAGACCGTAATTTTGCGATTTTCTGATTTTTTGACGGACAAAAATCTCGATTTTTTAGGTATTTTCAGTCATTTTTCAGCAAAAAAAAGCGAGAATTTCGAAAAACCAGCATTTTTTTCAGAATTAAAAAAAAAGATTTTAAATTTTCAGGGGTTTTGTTTAGTTTTTCGTGAAAAATGGGTCTATTGGAAATCTAGGAATTTTCAAAAAATTCTATAAATGCAAAATTTTCAATTTAGGTCAGTTTTACATCCTTCAAAGTTTTCAAAGTGATTGGAAACTTGAAAATCGAGTTCTAGACTCTTAAAAATACCAAAAATCAGCTAAAAAATTCGTTTTTTCTATATCTCATGGACCGGTACTGTAGGTATTTAAAGTGGGGGGAGATTTGAGTGATTTTGACAATAGAAAATTGAAAAAAATTATGCAAAATTACTGGATTCGTAGGGGGGAAGGGGAAAAAAGCACACAAGATTGATATGTACCCGAAAAATATTTTTTAAAAATGCATTTAAAAATTGTATATAAAGTGGGCGGAGCCTCCTGGATTCTAACGATGCTTCGGCACGACACGTGGATTGTTGATGAGAAAATGGAGCAACTGATGGTTGGGCATCGCCGGAATGCTGCCCGAACAGAATAGTGTCGGCGAGAAGATCGTCGCCAGGTTCTCAACGGTCATTTTGTTTTTGGAACTGTGATCGGCGACCTGGAAATGGGGGAAAACTCGCTTTTTAGGACTGTTTGGGGCTTTTTGGAGCTTTTTAGAGCCTTTTAAGGAGCTGTTTAGCAGCTTTTTAGGACTTTTTAGAGCTTTTTGGGAGCTTTTAGGAGCTGTTTAGGAGCTTTTCAGGACATTTTATGGCTTTTTAGACAATTTTT</canonical>
            <polymorphic>AGTTTCCAGAATTTCAGAGTTTTCTAGCTTAAAATTTTTAAAATTTTCAGATTTCTCGGGTCATAGATATCCATTTTTATGAATTTTCAAGTCGAAAATTTCAGATTTTTGAGTTTTTCAGACCGTAATTTTGCGATTTTCTGATTTTTTGACGGACAAAAATCTCGATTTTTTAGGTATTTTCAGTCATTTTTCAGCAAAAAAAAGCGAGAATTTCGAAAAACCAGCATTTTTTTCAGAATTAAAAAAAAAGATTTTAAATTTTCAGGGGTTTTGTTTAGTTTTTCGTGAAAAATGGGTCTATTGGAAATCTAGGAATTTTCAAAAAATTCTATAAATGCAAAATTTTCAATTTAGGTCAGTTTTACATCCTTCAAAGTTTTCAAAGTGATTGGAAACTTGAAAATCGAGTTCTAGACTCTTAAAAATACCAAAAATCAGCTAAAAAATTCGTTTTTTCTATATCTCATGGACCGGTACTGTAGGTATTTAAAGTGGGSGGAGATTTGAGTGATTTTGACAATAGAAAATTGAAAAAAATTATGCAAAATTACTGGATTCGTAGGGGGGAAGGGGAAAAAAGCACACAAGATTGATATGTACCCGAAAAATATTTTTTAAAAATGCATTTAAAAATTGTATATAAAGTGGGCGGAGCCTCCTGGATTCTAACGATGCTTCGGCACGACACGTGGATTGTTGATGAGAAAATGGAGCAACTGATGGTTGGGCATCGCCGGAATGCTGCCCGAACAGAATAGTGTCGGCGAGAAGATCGTCGCCAGGTTCTCAACGGTCATTTTGTTTTTGGAACTGTGATCGGCGACCTGGAAATGGGGGAAAACTCGCTTTTTAGGACTGTTTGGGGCTTTTTGGAGCTTTTTAGAGCCTTTTAAGGAGCTGTTTAGCAGCTTTTTAGGACTTTTTAGAGCTTTTTGGGAGCTTTTAGGAGCTGTTTAGGAGCTTTTCAGGACATTTTATGGCTTTTTAGACAATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCGTGAAAAATGGGTCTAT</pcr_primer_p1>
		<pcr_primer_p2>CCCTACGAATCCAGTAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>TTTCGTGAAAAATGGGTCTATTGGAAATCTAGGAATTTTCAAAAAATTCTATAAATGCAAAATTTTCAATTTAGGTCAGTTTTACATCCTTCAAAGTTTTCAAAGTGATTGGAAACTTGAAAATCGAGTTCTAGACTCTTAAAAATACCAAAAATCAGCTAAAAAATTCGTTTTTTCTATATCTCATGGACCGGTACTGTAGGTATTTAAAGTGGGGGGAGATTTGAGTGATTTTGACAATAGAAAATTGAAAAAAATTATGCAAAATTACTGGATTCGTAGGG</canonical_amplicon>
		<polymorphic_amplicon>TTTCGTGAAAAATGGGTCTATTGGAAATCTAGGAATTTTCAAAAAATTCTATAAATGCAAAATTTTCAATTTAGGTCAGTTTTACATCCTTCAAAGTTTTCAAAGTGATTGGAAACTTGAAAATCGAGTTCTAGACTCTTAAAAATACCAAAAATCAGCTAAAAAATTCGTTTTTTCTATATCTCATGGACCGGTACTGTAGGTATTTAAAGTGGGSGGAGATTTGAGTGATTTTGACAATAGAAAATTGAAAAAAATTATGCAAAATTACTGGATTCGTAGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10201</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>202503</contig_pos>
        <strand>+</strand>
        <context>AAATATTTTT[A/T]AAAAATGCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAAGGGGAAAAAAGCACACAAGATTGATATGTACCCGAAAAATATTTTT</left_flank>
        <right_flank>AAAAATGCATTTAAAAATTGTATATAAAGTGGGCGGAGCCTCCTGGATTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGACCGTAATTTTGCGATTTTCTGATTTTTTGACGGACAAAAATCTCGATTTTTTAGGTATTTTCAGTCATTTTTCAGCAAAAAAAAGCGAGAATTTCGAAAAACCAGCATTTTTTTCAGAATTAAAAAAAAAGATTTTAAATTTTCAGGGGTTTTGTTTAGTTTTTCGTGAAAAATGGGTCTATTGGAAATCTAGGAATTTTCAAAAAATTCTATAAATGCAAAATTTTCAATTTAGGTCAGTTTTACATCCTTCAAAGTTTTCAAAGTGATTGGAAACTTGAAAATCGAGTTCTAGACTCTTAAAAATACCAAAAATCAGCTAAAAAATTCGTTTTTTCTATATCTCATGGACCGGTACTGTAGGTATTTAAAGTGGGGGGAGATTTGAGTGATTTTGACAATAGAAAATTGAAAAAAATTATGCAAAATTACTGGATTCGTAGGGGGGAAGGGGAAAAAAGCACACAAGATTGATATGTACCCGAAAAATATTTTTTAAAAATGCATTTAAAAATTGTATATAAAGTGGGCGGAGCCTCCTGGATTCTAACGATGCTTCGGCACGACACGTGGATTGTTGATGAGAAAATGGAGCAACTGATGGTTGGGCATCGCCGGAATGCTGCCCGAACAGAATAGTGTCGGCGAGAAGATCGTCGCCAGGTTCTCAACGGTCATTTTGTTTTTGGAACTGTGATCGGCGACCTGGAAATGGGGGAAAACTCGCTTTTTAGGACTGTTTGGGGCTTTTTGGAGCTTTTTAGAGCCTTTTAAGGAGCTGTTTAGCAGCTTTTTAGGACTTTTTAGAGCTTTTTGGGAGCTTTTAGGAGCTGTTTAGGAGCTTTTCAGGACATTTTATGGCTTTTTAGACAATTTTTTGAGCTTCTAAGAAACTTTTTTGGAGCTTTCAAGAGCTTTTTTGGGCCTTTTTAGGACTATTCAGGACTTTTTCGAACATTTAGGAGTTTTTTAGGAGCTCTTCAGTACTTTATAGGGT</canonical>
            <polymorphic>AGACCGTAATTTTGCGATTTTCTGATTTTTTGACGGACAAAAATCTCGATTTTTTAGGTATTTTCAGTCATTTTTCAGCAAAAAAAAGCGAGAATTTCGAAAAACCAGCATTTTTTTCAGAATTAAAAAAAAAGATTTTAAATTTTCAGGGGTTTTGTTTAGTTTTTCGTGAAAAATGGGTCTATTGGAAATCTAGGAATTTTCAAAAAATTCTATAAATGCAAAATTTTCAATTTAGGTCAGTTTTACATCCTTCAAAGTTTTCAAAGTGATTGGAAACTTGAAAATCGAGTTCTAGACTCTTAAAAATACCAAAAATCAGCTAAAAAATTCGTTTTTTCTATATCTCATGGACCGGTACTGTAGGTATTTAAAGTGGGGGGAGATTTGAGTGATTTTGACAATAGAAAATTGAAAAAAATTATGCAAAATTACTGGATTCGTAGGGGGGAAGGGGAAAAAAGCACACAAGATTGATATGTACCCGAAAAATATTTTTWAAAAATGCATTTAAAAATTGTATATAAAGTGGGCGGAGCCTCCTGGATTCTAACGATGCTTCGGCACGACACGTGGATTGTTGATGAGAAAATGGAGCAACTGATGGTTGGGCATCGCCGGAATGCTGCCCGAACAGAATAGTGTCGGCGAGAAGATCGTCGCCAGGTTCTCAACGGTCATTTTGTTTTTGGAACTGTGATCGGCGACCTGGAAATGGGGGAAAACTCGCTTTTTAGGACTGTTTGGGGCTTTTTGGAGCTTTTTAGAGCCTTTTAAGGAGCTGTTTAGCAGCTTTTTAGGACTTTTTAGAGCTTTTTGGGAGCTTTTAGGAGCTGTTTAGGAGCTTTTCAGGACATTTTATGGCTTTTTAGACAATTTTTTGAGCTTCTAAGAAACTTTTTTGGAGCTTTCAAGAGCTTTTTTGGGCCTTTTTAGGACTATTCAGGACTTTTTCGAACATTTAGGAGTTTTTTAGGAGCTCTTCAGTACTTTATAGGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>488 233 139 128 12</canonical_bands>
                <polymorphic_bands>488 233 140 139</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>263 226 165 128 123 68 15 12</canonical_bands>
                <polymorphic_bands>263 226 165 140 123 68 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATTTGAGTGATTTTGACAATAG</pcr_primer_p1>
		<pcr_primer_p2>CATCAGTTGCTCCATTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>AGATTTGAGTGATTTTGACAATAGAAAATTGAAAAAAATTATGCAAAATTACTGGATTCGTAGGGGGGAAGGGGAAAAAAGCACACAAGATTGATATGTACCCGAAAAATATTTTTTAAAAATGCATTTAAAAATTGTATATAAAGTGGGCGGAGCCTCCTGGATTCTAACGATGCTTCGGCACGACACGTGGATTGTTGATGAGAAAATGGAGCAACTGATG</canonical_amplicon>
		<polymorphic_amplicon>AGATTTGAGTGATTTTGACAATAGAAAATTGAAAAAAATTATGCAAAATTACTGGATTCGTAGGGGGGAAGGGGAAAAAAGCACACAAGATTGATATGTACCCGAAAAATATTTTTWAAAAATGCATTTAAAAATTGTATATAAAGTGGGCGGAGCCTCCTGGATTCTAACGATGCTTCGGCACGACACGTGGATTGTTGATGAGAAAATGGAGCAACTGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10202</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>202719</contig_pos>
        <strand>+</strand>
        <context>GACCTGGAAA[C/T]GGGRGAAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTTCTCAACGGTCATTTTGTTTTTGGAACTGTGATCGGCGACCTGGAAA</left_flank>
        <right_flank>GGGGGAAAACTCGCTTTTTAGGACTGTTTGGGGCTTTTTGGAGCTTTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGCAAAATTTTCAATTTAGGTCAGTTTTACATCCTTCAAAGTTTTCAAAGTGATTGGAAACTTGAAAATCGAGTTCTAGACTCTTAAAAATACCAAAAATCAGCTAAAAAATTCGTTTTTTCTATATCTCATGGACCGGTACTGTAGGTATTTAAAGTGGGGGGAGATTTGAGTGATTTTGACAATAGAAAATTGAAAAAAATTATGCAAAATTACTGGATTCGTAGGGGGGAAGGGGAAAAAAGCACACAAGATTGATATGTACCCGAAAAATATTTTTTAAAAATGCATTTAAAAATTGTATATAAAGTGGGCGGAGCCTCCTGGATTCTAACGATGCTTCGGCACGACACGTGGATTGTTGATGAGAAAATGGAGCAACTGATGGTTGGGCATCGCCGGAATGCTGCCCGAACAGAATAGTGTCGGCGAGAAGATCGTCGCCAGGTTCTCAACGGTCATTTTGTTTTTGGAACTGTGATCGGCGACCTGGAAATGGGGGAAAACTCGCTTTTTAGGACTGTTTGGGGCTTTTTGGAGCTTTTTAGAGCCTTTTAAGGAGCTGTTTAGCAGCTTTTTAGGACTTTTTAGAGCTTTTTGGGAGCTTTTAGGAGCTGTTTAGGAGCTTTTCAGGACATTTTATGGCTTTTTAGACAATTTTTTGAGCTTCTAAGAAACTTTTTTGGAGCTTTCAAGAGCTTTTTTGGGCCTTTTTAGGACTATTCAGGACTTTTTCGAACATTTAGGAGTTTTTTAGGAGCTCTTCAGTACTTTATAGGGTCTTTTAGGTGTTCTAGGACCTTTTTAAGACTTTTTAGGAGCTTTTCAGGACTTCTTAGAAGTTTTTTAGGATTTTTTAGGACTAAAAATAGCCTTGAATAGTCTGAAATTAGTATAAAATGGCTAAAAATAGACCGAAAATTGGATTTGTAGGCCTATTTCAGGCCTATCTTGCCCCCATTTTACCTTCTTCAAATGCGCCAAAACCGCTCCAAGC</canonical>
            <polymorphic>AAATGCAAAATTTTCAATTTAGGTCAGTTTTACATCCTTCAAAGTTTTCAAAGTGATTGGAAACTTGAAAATCGAGTTCTAGACTCTTAAAAATACCAAAAATCAGCTAAAAAATTCGTTTTTTCTATATCTCATGGACCGGTACTGTAGGTATTTAAAGTGGGGGGAGATTTGAGTGATTTTGACAATAGAAAATTGAAAAAAATTATGCAAAATTACTGGATTCGTAGGGGGGAAGGGGAAAAAAGCACACAAGATTGATATGTACCCGAAAAATATTTTTTAAAAATGCATTTAAAAATTGTATATAAAGTGGGCGGAGCCTCCTGGATTCTAACGATGCTTCGGCACGACACGTGGATTGTTGATGAGAAAATGGAGCAACTGATGGTTGGGCATCGCCGGAATGCTGCCCGAACAGAATAGTGTCGGCGAGAAGATCGTCGCCAGGTTCTCAACGGTCATTTTGTTTTTGGAACTGTGATCGGCGACCTGGAAAYGGGGGAAAACTCGCTTTTTAGGACTGTTTGGGGCTTTTTGGAGCTTTTTAGAGCCTTTTAAGGAGCTGTTTAGCAGCTTTTTAGGACTTTTTAGAGCTTTTTGGGAGCTTTTAGGAGCTGTTTAGGAGCTTTTCAGGACATTTTATGGCTTTTTAGACAATTTTTTGAGCTTCTAAGAAACTTTTTTGGAGCTTTCAAGAGCTTTTTTGGGCCTTTTTAGGACTATTCAGGACTTTTTCGAACATTTAGGAGTTTTTTAGGAGCTCTTCAGTACTTTATAGGGTCTTTTAGGTGTTCTAGGACCTTTTTAAGACTTTTTAGGAGCTTTTCAGGACTTCTTAGAAGTTTTTTAGGATTTTTTAGGACTAAAAATAGCCTTGAATAGTCTGAAATTAGTATAAAATGGCTAAAAATAGACCGAAAATTGGATTTGTAGGCCTATTTCAGGCCTATCTTGCCCCCATTTTACCTTCTTCAAATGCGCCAAAACCGCTCCAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCTCAACGGTCATTTTGT</pcr_primer_p1>
		<pcr_primer_p2>ACTATTCAAGGCTATTTTTAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>436</pcr_amplicon_size>
		<canonical_amplicon>GTTCTCAACGGTCATTTTGTTTTTGGAACTGTGATCGGCGACCTGGAAATGGGGGAAAACTCGCTTTTTAGGACTGTTTGGGGCTTTTTGGAGCTTTTTAGAGCCTTTTAAGGAGCTGTTTAGCAGCTTTTTAGGACTTTTTAGAGCTTTTTGGGAGCTTTTAGGAGCTGTTTAGGAGCTTTTCAGGACATTTTATGGCTTTTTAGACAATTTTTTGAGCTTCTAAGAAACTTTTTTGGAGCTTTCAAGAGCTTTTTTGGGCCTTTTTAGGACTATTCAGGACTTTTTCGAACATTTAGGAGTTTTTTAGGAGCTCTTCAGTACTTTATAGGGTCTTTTAGGTGTTCTAGGACCTTTTTAAGACTTTTTAGGAGCTTTTCAGGACTTCTTAGAAGTTTTTTAGGATTTTTTAGGACTAAAAATAGCCTTGAATAGT</canonical_amplicon>
		<polymorphic_amplicon>GTTCTCAACGGTCATTTTGTTTTTGGAACTGTGATCGGCGACCTGGAAAYGGGGGAAAACTCGCTTTTTAGGACTGTTTGGGGCTTTTTGGAGCTTTTTAGAGCCTTTTAAGGAGCTGTTTAGCAGCTTTTTAGGACTTTTTAGAGCTTTTTGGGAGCTTTTAGGAGCTGTTTAGGAGCTTTTCAGGACATTTTATGGCTTTTTAGACAATTTTTTGAGCTTCTAAGAAACTTTTTTGGAGCTTTCAAGAGCTTTTTTGGGCCTTTTTAGGACTATTCAGGACTTTTTCGAACATTTAGGAGTTTTTTAGGAGCTCTTCAGTACTTTATAGGGTCTTTTAGGTGTTCTAGGACCTTTTTAAGACTTTTTAGGAGCTTTTCAGGACTTCTTAGAAGTTTTTTAGGATTTTTTAGGACTAAAAATAGCCTTGAATAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10204</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>205517</contig_pos>
        <strand>+</strand>
        <context>GGTCCACAAA[C/G]ATGGAAATCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCTTCATCGGCCATCCGCTTTATATAATCCGCTGCATGAAGGTCCACAAA</left_flank>
        <right_flank>ATGGAAATCAAGCCATCGGCCACCAAAAGATCCATCGTATCGAAACGCTT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGAGCTAAAATGAGCATTTTTAGCTTATTTCTAGCTTGAAATCGTCATTTTCGAATTTTCAGACAGTTTTGGGATCATTTTCCCTAGAATTTTGGTCCATTTTTAGCCATTTTAGACTAATTTCGGACAATTCCAAAAATTTTGAAATCTTTTTTCTAGTGTTTCGGTCTATTTCCCATCGTTTAGGTCCATTTTTCATGTATCCTGAGTATATTTTTAACGATTTTGAAGCTATTTTCAATGATTTCAAGCCAGTTTTCATGGATTTTGGCTGATTTGTGTCAAAAATAAGCTGGAAAATCGAGCTAATATGAGCATTTTTAGACCATTTCTAGCTCAAAATAGTCATTTTTGTAGAAAAAATTAGCTGAAAAAGCTCGAAATCAAGCTAAATTGAGCATTTTTTGACAATTTTCAGCTTTAAAAACCTACCTATCCTCATAAATCGCTTCATCGGCCATCCGCTTTATATAATCCGCTGCATGAAGGTCCACAAACATGGAAATCAAGCCATCGGCCACCAAAAGATCCATCGTATCGAAACGCTTCTCGCCAACATAGAATTGTCCATCGTAGTAGAGCTAGAAATCGAGATAGAGCTATTTTTAATTAATTAGTCGAAAAATGGTTATTATAGCAAAAATTTAGCATATGTTGATTCAAAAATGTCTTTTTATGGCAAGAAAATTGAATTTTCTCACATTTTACAGCTTTTTTATCGCTTTTTTCCCTCACTTTATAATTCATAACCTTTCCATCGAAGACCATACATAGCGTGCACGCATCTCTCGATCGAATCGACTCTCTAACCAAATACGACCCCTCGCCGACTTCTAGAAGCATCCTTTCTGCCTGAAAAATCCTCTTTTCAAAGAAAAATGCTGTTTTTTCCCTTTCAAAACCTCATTTCTATCAATTAGCCCATGAAATTCGGTGCCAAAATGGCGTGGCTTATTCGGCACCGGCCGCCGGCACTGAACGGCATTCGGCTTCGGCGC</canonical>
            <polymorphic>ATCGAGCTAAAATGAGCATTTTTAGCTTATTTCTAGCTTGAAATCGTCATTTTCGAATTTTCAGACAGTTTTGGGATCATTTTCCCTAGAATTTTGGTCCATTTTTAGCCATTTTAGACTAATTTCGGACAATTCCAAAAATTTTGAAATCTTTTTTCTAGTGTTTCGGTCTATTTCCCATCGTTTAGGTCCATTTTTCATGTATCCTGAGTATATTTTTAACGATTTTGAAGCTATTTTCAATGATTTCAAGCCAGTTTTCATGGATTTTGGCTGATTTGTGTCAAAAATAAGCTGGAAAATCGAGCTAATATGAGCATTTTTAGACCATTTCTAGCTCAAAATAGTCATTTTTGTAGAAAAAATTAGCTGAAAAAGCTCGAAATCAAGCTAAATTGAGCATTTTTTGACAATTTTCAGCTTTAAAAACCTACCTATCCTCATAAATCGCTTCATCGGCCATCCGCTTTATATAATCCGCTGCATGAAGGTCCACAAASATGGAAATCAAGCCATCGGCCACCAAAAGATCCATCGTATCGAAACGCTTCTCGCCAACATAGAATTGTCCATCGTAGTAGAGCTAGAAATCGAGATAGAGCTATTTTTAATTAATTAGTCGAAAAATGGTTATTATAGCAAAAATTTAGCATATGTTGATTCAAAAATGTCTTTTTATGGCAAGAAAATTGAATTTTCTCACATTTTACAGCTTTTTTATCGCTTTTTTCCCTCACTTTATAATTCATAACCTTTCCATCGAAGACCATACATAGCGTGCACGCATCTCTCGATCGAATCGACTCTCTAACCAAATACGACCCCTCGCCGACTTCTAGAAGCATCCTTTCTGCCTGAAAAATCCTCTTTTCAAAGAAAAATGCTGTTTTTTCCCTTTCAAAACCTCATTTCTATCAATTAGCCCATGAAATTCGGTGCCAAAATGGCGTGGCTTATTCGGCACCGGCCGCCGGCACTGAACGGCATTCGGCTTCGGCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>425 222 199 75 63 16</canonical_bands>
                <polymorphic_bands>441 222 199 75 63</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATTTCTAGCTCAAAATAGTCA</pcr_primer_p1>
		<pcr_primer_p2>ACTACGATGGACAATTCTATGTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CCATTTCTAGCTCAAAATAGTCATTTTTGTAGAAAAAATTAGCTGAAAAAGCTCGAAATCAAGCTAAATTGAGCATTTTTTGACAATTTTCAGCTTTAAAAACCTACCTATCCTCATAAATCGCTTCATCGGCCATCCGCTTTATATAATCCGCTGCATGAAGGTCCACAAACATGGAAATCAAGCCATCGGCCACCAAAAGATCCATCGTATCGAAACGCTTCTCGCCAACATAGAATTGTCCATCGTAGT</canonical_amplicon>
		<polymorphic_amplicon>CCATTTCTAGCTCAAAATAGTCATTTTTGTAGAAAAAATTAGCTGAAAAAGCTCGAAATCAAGCTAAATTGAGCATTTTTTGACAATTTTCAGCTTTAAAAACCTACCTATCCTCATAAATCGCTTCATCGGCCATCCGCTTTATATAATCCGCTGCATGAAGGTCCACAAASATGGAAATCAAGCCATCGGCCACCAAAAGATCCATCGTATCGAAACGCTTCTCGCCAACATAGAATTGTCCATCGTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10205</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>277844</contig_pos>
        <strand>+</strand>
        <context>AAAAGGAAAA[A/T]GTATAGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAAGAAGTAGTTGAACTTACTTGATATTTTATGGAAAATAAAAGGAAAA</left_flank>
        <right_flank>GTATAGAAAATTAACATTATACCAATTTATCTCGGTCCCTGTCATAGAAA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATTCCGTTTCAGTATTGTTCCCAGTCCGCAAATGTCGCTACAATTCTATCCAGACACCGGATCAGCTCACCTATTTGGCACTTTGTATGACAAAAGCCACAATGAAATCCAGAAACGTTCCCTATCTCAAAGAATTCGACGCTCTGCAGTACTTCCATAATAAGGTAGCAACCGGAAAGTACAACTTGACGGAGAAAGATCAATGTGATGAGGCGTTCATGGAGAGGTTCTGTGCGGAGGATAAGGCGGAAATGGAGGAGTACTGTAAGAGAAAACGAGAAGAGTATGAGGCGGCGGAAAAAAAGAGAAAGGAGAAGGAAAAGGAGTTGGGTCCACCAGCAAAGAATGGCAAGAAGTCAAAGGAGATGAGCAAGGAACAGAAGAAGAAGTCAAAGGAGAATCCGAAGAATGGTCAGAAAAAGGATCAGAAGAAACCAAAACCAGCAGTGAAGAAGTAGTTGAACTTACTTGATATTTTATGGAAAATAAAAGGAAAAAGTATAGAAAATTAACATTATACCAATTTATCTCGGTCCCTGTCATAGAAATACAAACTAGTTGCTAATTGATAAAATGTTGATTACATTATGATGAACAATTTATCAGTTGACACATTTTTAATTTCTTGCACAGGAACCGAAGTAATTGAGCTTAAACTTGACAGTTTGGTAGCCATTCTAATACAGATATTACTGTAACTGAATGTCTAATTTACAAATTACTGGTCAAACAGTGAATTGAGCTTTTTATCACAACCAGCTTTATGTGAAATTTGAGCTCAGAAAACCTAAAAAGCTCATTCAAATTGCGACGTGAGCTGACTAATATGGATCATCAGCCGTAAAACCTTTAATAGAAATGCTCGTTAACTTTGAGACTGTTTCTTTTGGTTCCTGTCAAAGATATAAAAAAATTATCAACTGATAAATTGTTTAATATAATATCAGCTATGTTTTATCAGTTGATCATTTTTTGATATCTTGTACAAGAGTTGAGAT</canonical>
            <polymorphic>TGATTCCGTTTCAGTATTGTTCCCAGTCCGCAAATGTCGCTACAATTCTATCCAGACACCGGATCAGCTCACCTATTTGGCACTTTGTATGACAAAAGCCACAATGAAATCCAGAAACGTTCCCTATCTCAAAGAATTCGACGCTCTGCAGTACTTCCATAATAAGGTAGCAACCGGAAAGTACAACTTGACGGAGAAAGATCAATGTGATGAGGCGTTCATGGAGAGGTTCTGTGCGGAGGATAAGGCGGAAATGGAGGAGTACTGTAAGAGAAAACGAGAAGAGTATGAGGCGGCGGAAAAAAAGAGAAAGGAGAAGGAAAAGGAGTTGGGTCCACCAGCAAAGAATGGCAAGAAGTCAAAGGAGATGAGCAAGGAACAGAAGAAGAAGTCAAAGGAGAATCCGAAGAATGGTCAGAAAAAGGATCAGAAGAAACCAAAACCAGCAGTGAAGAAGTAGTTGAACTTACTTGATATTTTATGGAAAATAAAAGGAAAAWGTATAGAAAATTAACATTATACCAATTTATCTCGGTCCCTGTCATAGAAATACAAACTAGTTGCTAATTGATAAAATGTTGATTACATTATGATGAACAATTTATCAGTTGACACATTTTTAATTTCTTGCACAGGAACCGAAGTAATTGAGCTTAAACTTGACAGTTTGGTAGCCATTCTAATACAGATATTACTGTAACTGAATGTCTAATTTACAAATTACTGGTCAAACAGTGAATTGAGCTTTTTATCACAACCAGCTTTATGTGAAATTTGAGCTCAGAAAACCTAAAAAGCTCATTCAAATTGCGACGTGAGCTGACTAATATGGATCATCAGCCGTAAAACCTTTAATAGAAATGCTCGTTAACTTTGAGACTGTTTCTTTTGGTTCCTGTCAAAGATATAAAAAAATTATCAACTGATAAATTGTTTAATATAATATCAGCTATGTTTTATCAGTTGATCATTTTTTGATATCTTGTACAAGAGTTGAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCAGTGAAGAAGTAGTTGAA</pcr_primer_p1>
		<pcr_primer_p2>CACTGTTTGACCAGTAATTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>294</pcr_amplicon_size>
		<canonical_amplicon>CAGCAGTGAAGAAGTAGTTGAACTTACTTGATATTTTATGGAAAATAAAAGGAAAAAGTATAGAAAATTAACATTATACCAATTTATCTCGGTCCCTGTCATAGAAATACAAACTAGTTGCTAATTGATAAAATGTTGATTACATTATGATGAACAATTTATCAGTTGACACATTTTTAATTTCTTGCACAGGAACCGAAGTAATTGAGCTTAAACTTGACAGTTTGGTAGCCATTCTAATACAGATATTACTGTAACTGAATGTCTAATTTACAAATTACTGGTCAAACAGTG</canonical_amplicon>
		<polymorphic_amplicon>CAGCAGTGAAGAAGTAGTTGAACTTACTTGATATTTTATGGAAAATAAAAGGAAAAWGTATAGAAAATTAACATTATACCAATTTATCTCGGTCCCTGTCATAGAAATACAAACTAGTTGCTAATTGATAAAATGTTGATTACATTATGATGAACAATTTATCAGTTGACACATTTTTAATTTCTTGCACAGGAACCGAAGTAATTGAGCTTAAACTTGACAGTTTGGTAGCCATTCTAATACAGATATTACTGTAACTGAATGTCTAATTTACAAATTACTGGTCAAACAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10275</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>340522</contig_pos>
        <strand>+</strand>
        <context>ATGAAGGAAT[C/T]GGTTGAGAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAAAATGTGGTTAAGGTTCTAGATTTTTCTGTGAAGAAATGAAGGAAT</left_flank>
        <right_flank>GGTTGAGAACTGGCTGAGATATCACTATGTTTCTATTGCGAGACGCGCCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGATGGATTGCTCGAAATGTTCCTGGTCAAAAATCTCTGCTAGGATCCGTACTGGATCCAGTAGCTGATAAACTTCTCATCTCCACAATGTTCATCACAATGACACATGCCGGACTCATTCCTTGTAGGGAAAAATTGAAAACATTTAAATTTTGAGAGAGACTAAAAAATTTCAGTACCCCTGACCTCAATTGTGATTCTTCGTGACGTGTGTCTCATCGCCGGTGGCTTCTACAAACGGTACCAAGTGATGAGTCCCCCGTACTCACTGAATCGATTCTTCAATCCACAAGTTTCTTCGATGCAAGTCGTTCCTACTATGATGAGCAAGGTAAGACTGTAAAAACAACGACGAAAATCGATAAGAAAACAGCTGAGATATGGGTTTTTGCAAACGCCACATGAAAAGTGGGTCTGCTACTTATTTAGCAGACCTAAAAGACCTAAATAAAAAATGTGGTTAAGGTTCTAGATTTTTCTGTGAAGAAATGAAGGAATCGGTTGAGAACTGGCTGAGATATCACTATGTTTCTATTGCGAGACGCGCCACGTGCAAAGTGGGTCTGCTAATTATTTACCACGCNNNNNNNNNNTGCTGAATATTTAGCAGACCAACGCGCGCTTTTTCTCTGCGTCTCGTTGACCTGCTAAATAGCTAGCAGACCCACTAGAGACGCAGAGAAGTAGACATTGGTCTGCTAATGTTTGAAAAATCGTTGGCCTACTAAATAATTAGCAGACCCCTTTATCTGCGTCTCTTCAAGCTTCTTCCTATTGGGCACTTGCGTTGAGAGACGCAGAGAAGCAGAAAGAACGTTGGCCTGCTAATTAATTAGCAGACCCATTTTCCACGTGGCGCGCCTTAAAATCTCTCGTTTTCACCCGATTTCCTTGATTTCTCCACTAGTTTGACCCAAATTTTCCGCTATTTTCAGATCAACACCGTACTCCAACTGTCACTGGTCGCTCTCGCCCTGGCATCCCCAGTTTTTGACTTCT</canonical>
            <polymorphic>TGGATGGATTGCTCGAAATGTTCCTGGTCAAAAATCTCTGCTAGGATCCGTACTGGATCCAGTAGCTGATAAACTTCTCATCTCCACAATGTTCATCACAATGACACATGCCGGACTCATTCCTTGTAGGGAAAAATTGAAAACATTTAAATTTTGAGAGAGACTAAAAAATTTCAGTACCCCTGACCTCAATTGTGATTCTTCGTGACGTGTGTCTCATCGCCGGTGGCTTCTACAAACGGTACCAAGTGATGAGTCCCCCGTACTCACTGAATCGATTCTTCAATCCACAAGTTTCTTCGATGCAAGTCGTTCCTACTATGATGAGCAAGGTAAGACTGTAAAAACAACGACGAAAATCGATAAGAAAACAGCTGAGATATGGGTTTTTGCAAACGCCACATGAAAAGTGGGTCTGCTACTTATTTAGCAGACCTAAAAGACCTAAATAAAAAATGTGGTTAAGGTTCTAGATTTTTCTGTGAAGAAATGAAGGAATYGGTTGAGAACTGGCTGAGATATCACTATGTTTCTATTGCGAGACGCGCCACGTGCAAAGTGGGTCTGCTAATTATTTACCACGCNNNNNNNNNNTGCTGAATATTTAGCAGACCAACGCGCGCTTTTTCTCTGCGTCTCGTTGACCTGCTAAATAGCTAGCAGACCCACTAGAGACGCAGAGAAGTAGACATTGGTCTGCTAATGTTTGAAAAATCGTTGGCCTACTAAATAATTAGCAGACCCCTTTATCTGCGTCTCTTCAAGCTTCTTCCTATTGGGCACTTGCGTTGAGAGACGCAGAGAAGCAGAAAGAACGTTGGCCTGCTAATTAATTAGCAGACCCATTTTCCACGTGGCGCGCCTTAAAATCTCTCGTTTTCACCCGATTTCCTTGATTTCTCCACTAGTTTGACCCAAATTTTCCGCTATTTTCAGATCAACACCGTACTCCAACTGTCACTGGTCGCTCTCGCCCTGGCATCCCCAGTTTTTGACTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>504 219 114 83 57 18 5</canonical_bands>
                <polymorphic_bands>723 114 83 57 18 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>504 219 197 75 5</canonical_bands>
                <polymorphic_bands>723 197 75 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTAAGACTGTAAAAACAACGAC</pcr_primer_p1>
		<pcr_primer_p2>GGTAAATAATTAGCAGACCCACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTAAGACTGTAAAAACAACGACGAAAATCGATAAGAAAACAGCTGAGATATGGGTTTTTGCAAACGCCACATGAAAAGTGGGTCTGCTACTTATTTAGCAGACCTAAAAGACCTAAATAAAAAATGTGGTTAAGGTTCTAGATTTTTCTGTGAAGAAATGAAGGAATCGGTTGAGAACTGGCTGAGATATCACTATGTTTCTATTGCGAGACGCGCCACGTGCAAAGTGGGTCTGCTAATTATTTACC</canonical_amplicon>
		<polymorphic_amplicon>GGTAAGACTGTAAAAACAACGACGAAAATCGATAAGAAAACAGCTGAGATATGGGTTTTTGCAAACGCCACATGAAAAGTGGGTCTGCTACTTATTTAGCAGACCTAAAAGACCTAAATAAAAAATGTGGTTAAGGTTCTAGATTTTTCTGTGAAGAAATGAAGGAATYGGTTGAGAACTGGCTGAGATATCACTATGTTTCTATTGCGAGACGCGCCACGTGCAAAGTGGGTCTGCTAATTATTTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10292</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>366051</contig_pos>
        <strand>+</strand>
        <context>GAATTTGAGA[A/T]TTTGAGCCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTTTTTCATGCTGATTTAACTCGAATTTGAGTTTGAGCCGAATTTGAGA</left_flank>
        <right_flank>TTTGAGCCGTTTTCTCTAGATTTTCTCCGCCTCAACACTCACCAACGGAT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTGAAGCTAGTTACGGGGAGGAATAAGATTTTGGTCTGCTAAAGATTTAGCAGGCCAATCTGAGTTTGACATGCTATTGAGAAACGCAGAGAAAGCAAGAGCATTGGTCTGCTAATTATTTAGCAGACCAATGCTATCTGACTCTCAGCGTCTCGTTGGCCTGCTATTGTTTGGAAACGTGGAATTTGGGTCTGCTAATGTTTGATGCGTTGGCCTGCTAATGATTAGCAGACCAATGCTCTCCGACTCTCTACGTCTTGCAGGTCTGCCAATGTGCTCTCTCCGTTTTTAACATTAGCAGACCAACGAGACGCAGAGAGTCAGAAAGCGGCACGTGGGATCTAGGCCTGCTAAATATTTAGCAGACCCAAATCTGGTTTTCTCCATAACTCTCTTCAAAATCGACGTAGAAAAATGATTTCTGGCTCATTTTGCAGCATTTTTCATGTTTTTCATGCTGATTTAACTCGAATTTGAGTTTGAGCCGAATTTGAGATTTTGAGCCGTTTTCTCTAGATTTTCTCCGCCTCAACACTCACCAACGGATTGCTATTCCCAAATCTGTACAATTGATAGCTCTCGTTCAACACATTCTGCAGTAGACCAGCACGATCTTTGTACATTTTCAACGATGTGATAACTTGATCCTCGTTAGCGTCTCCCGATACAACTTCCGCGGGAATCTCCCGAACATGACTGGCACTTTCACAATTGAATAATCCCAAATATTTCAATGGTTTGACTAGTGATTGAAGACCGCAAATATCGGTTCGAACTGATTCCCGGTACCTCGCTGGATTGTCATGGGATGATGGTTGGGTCGCCAAGTTGGTTGATGAGATATCCAGATGAGTCAGCTTTTTGAGGCTTACAATGATTTTATTAAGAGTCGTCACTGGATTTGGATAGGTTCCTGTGTCCTTATTAGACTGGGATATATCCAAAACTTGAAGTTCTGTCATCTGACAAATACTTGGAATCGCATGATAGAGATCTG</canonical>
            <polymorphic>ATTTTGAAGCTAGTTACGGGGAGGAATAAGATTTTGGTCTGCTAAAGATTTAGCAGGCCAATCTGAGTTTGACATGCTATTGAGAAACGCAGAGAAAGCAAGAGCATTGGTCTGCTAATTATTTAGCAGACCAATGCTATCTGACTCTCAGCGTCTCGTTGGCCTGCTATTGTTTGGAAACGTGGAATTTGGGTCTGCTAATGTTTGATGCGTTGGCCTGCTAATGATTAGCAGACCAATGCTCTCCGACTCTCTACGTCTTGCAGGTCTGCCAATGTGCTCTCTCCGTTTTTAACATTAGCAGACCAACGAGACGCAGAGAGTCAGAAAGCGGCACGTGGGATCTAGGCCTGCTAAATATTTAGCAGACCCAAATCTGGTTTTCTCCATAACTCTCTTCAAAATCGACGTAGAAAAATGATTTCTGGCTCATTTTGCAGCATTTTTCATGTTTTTCATGCTGATTTAACTCGAATTTGAGTTTGAGCCGAATTTGAGAWTTTGAGCCGTTTTCTCTAGATTTTCTCCGCCTCAACACTCACCAACGGATTGCTATTCCCAAATCTGTACAATTGATAGCTCTCGTTCAACACATTCTGCAGTAGACCAGCACGATCTTTGTACATTTTCAACGATGTGATAACTTGATCCTCGTTAGCGTCTCCCGATACAACTTCCGCGGGAATCTCCCGAACATGACTGGCACTTTCACAATTGAATAATCCCAAATATTTCAATGGTTTGACTAGTGATTGAAGACCGCAAATATCGGTTCGAACTGATTCCCGGTACCTCGCTGGATTGTCATGGGATGATGGTTGGGTCGCCAAGTTGGTTGATGAGATATCCAGATGAGTCAGCTTTTTGAGGCTTACAATGATTTTATTAAGAGTCGTCACTGGATTTGGATAGGTTCCTGTGTCCTTATTAGACTGGGATATATCCAAAACTTGAAGTTCTGTCATCTGACAAATACTTGGAATCGCATGATAGAGATCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTGCTCTCTCCGTTTTTA</pcr_primer_p1>
		<pcr_primer_p2>TACAGATTTGGGAATAGCAATC</pcr_primer_p2>
		<pcr_amplicon_size>295</pcr_amplicon_size>
		<canonical_amplicon>ATGTGCTCTCTCCGTTTTTAACATTAGCAGACCAACGAGACGCAGAGAGTCAGAAAGCGGCACGTGGGATCTAGGCCTGCTAAATATTTAGCAGACCCAAATCTGGTTTTCTCCATAACTCTCTTCAAAATCGACGTAGAAAAATGATTTCTGGCTCATTTTGCAGCATTTTTCATGTTTTTCATGCTGATTTAACTCGAATTTGAGTTTGAGCCGAATTTGAGATTTTGAGCCGTTTTCTCTAGATTTTCTCCGCCTCAACACTCACCAACGGATTGCTATTCCCAAATCTGTA</canonical_amplicon>
		<polymorphic_amplicon>ATGTGCTCTCTCCGTTTTTAACATTAGCAGACCAACGAGACGCAGAGAGTCAGAAAGCGGCACGTGGGATCTAGGCCTGCTAAATATTTAGCAGACCCAAATCTGGTTTTCTCCATAACTCTCTTCAAAATCGACGTAGAAAAATGATTTCTGGCTCATTTTGCAGCATTTTTCATGTTTTTCATGCTGATTTAACTCGAATTTGAGTTTGAGCCGAATTTGAGAWTTTGAGCCGTTTTCTCTAGATTTTCTCCGCCTCAACACTCACCAACGGATTGCTATTCCCAAATCTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10307</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>7768</contig_pos>
        <strand>+</strand>
        <context>GAACCAAACT[C/T]CAGAATCACG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTCAATCAACAAGTTGTTTGCATAATCCTTCCAAATTCAGAACCAAACT</left_flank>
        <right_flank>CAGAATCACGTCATCTGGTTCTCTTTCTAGAACTTTTTTTTGTTCCATTC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTACTTGTTTAGCTGATTTTTGATGTCTGAAAAAATGTATTGAAAACAACAACACAAGCTATGAGAAGGGACAATAAAGGAAAAAGATTTCAATCTGATTTTTGATCATTTGGTTTTTTTTTTAATTGAAAAAAATGATGATCCCAAAAATAGGAAAAATAAATCATTTACTATACCGTAAACTGATAGAACGCCACCCAAATCGTGAACTTTGAGCTCATGTATCTCATTTTGTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGGTGATATCATGATAAACATTTTATCAGTTAACAACTTTTTGATATCTTCCAAAAGAAGTGAGATATATAAATTCAAAGCGGATGGTCCGGGTGGCGTTCTACTAGTGTGTTTACGGTAACTTTTATTATAGAAAATTGATGAAAAATTCAGCAGGAAAGTTAAAATTTTCAGATGTTCAATCAACAAGTTGTTTGCATAATCCTTCCAAATTCAGAACCAAACTTCAGAATCACGTCATCTGGTTCTCTTTCTAGAACTTTTTTTTGTTCCATTCAACGTTTTTTTGGTTTTGTCCCAAACTTTTTTCCTATTTGATTCATATTTTCTGACTCACGGAATATAATTCTGTAAACAAAAAATTCTCTTTTTTCTTTTTCCTGTTTTCAAAACTCAAATTGTATATAAAGACGATTTTCAGACTGAAAATCATAGGCAACGTTTTGAGCTTGGTATTTCCGTATATCCTCTAATAGATGCCCAGAGAAACCGTCAACTTGAGCTTAACTATCTCAATTCCTGTGAAAGATATCAAGAAGTGGTTAACTGATAAAATATTGATAATATTATGATAAACATTTTACCAATTGAGCACTTTTTGATATCTTTTACAGGAACTGAGATATATGGGCTCAAATTTGACGGTTTGAGTGGTTCACAGGAATCGAGATAATTGAGCTTGAAGTTGACACAATTCGAGTGGGCTTCTGATAGAGGTTATACGATA</canonical>
            <polymorphic>TTTACTTGTTTAGCTGATTTTTGATGTCTGAAAAAATGTATTGAAAACAACAACACAAGCTATGAGAAGGGACAATAAAGGAAAAAGATTTCAATCTGATTTTTGATCATTTGGTTTTTTTTTTAATTGAAAAAAATGATGATCCCAAAAATAGGAAAAATAAATCATTTACTATACCGTAAACTGATAGAACGCCACCCAAATCGTGAACTTTGAGCTCATGTATCTCATTTTGTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGGTGATATCATGATAAACATTTTATCAGTTAACAACTTTTTGATATCTTCCAAAAGAAGTGAGATATATAAATTCAAAGCGGATGGTCCGGGTGGCGTTCTACTAGTGTGTTTACGGTAACTTTTATTATAGAAAATTGATGAAAAATTCAGCAGGAAAGTTAAAATTTTCAGATGTTCAATCAACAAGTTGTTTGCATAATCCTTCCAAATTCAGAACCAAACTYCAGAATCACGTCATCTGGTTCTCTTTCTAGAACTTTTTTTTGTTCCATTCAACGTTTTTTTGGTTTTGTCCCAAACTTTTTTCCTATTTGATTCATATTTTCTGACTCACGGAATATAATTCTGTAAACAAAAAATTCTCTTTTTTCTTTTTCCTGTTTTCAAAACTCAAATTGTATATAAAGACGATTTTCAGACTGAAAATCATAGGCAACGTTTTGAGCTTGGTATTTCCGTATATCCTCTAATAGATGCCCAGAGAAACCGTCAACTTGAGCTTAACTATCTCAATTCCTGTGAAAGATATCAAGAAGTGGTTAACTGATAAAATATTGATAATATTATGATAAACATTTTACCAATTGAGCACTTTTTGATATCTTTTACAGGAACTGAGATATATGGGCTCAAATTTGACGGTTTGAGTGGTTCACAGGAATCGAGATAATTGAGCTTGAAGTTGACACAATTCGAGTGGGCTTCTGATAGAGGTTATACGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>349 289 101 90 68 43 29 18 13</canonical_bands>
                <polymorphic_bands>349 289 114 90 68 43 29 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTCAGCAGGAAAGTTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAAAACAGGAAAAAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATTCAGCAGGAAAGTTAAAATTTTCAGATGTTCAATCAACAAGTTGTTTGCATAATCCTTCCAAATTCAGAACCAAACTTCAGAATCACGTCATCTGGTTCTCTTTCTAGAACTTTTTTTTGTTCCATTCAACGTTTTTTTGGTTTTGTCCCAAACTTTTTTCCTATTTGATTCATATTTTCTGACTCACGGAATATAATTCTGTAAACAAAAAATTCTCTTTTTTCTTTTTCCTGTTTTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAATTCAGCAGGAAAGTTAAAATTTTCAGATGTTCAATCAACAAGTTGTTTGCATAATCCTTCCAAATTCAGAACCAAACTYCAGAATCACGTCATCTGGTTCTCTTTCTAGAACTTTTTTTTGTTCCATTCAACGTTTTTTTGGTTTTGTCCCAAACTTTTTTCCTATTTGATTCATATTTTCTGACTCACGGAATATAATTCTGTAAACAAAAAATTCTCTTTTTTCTTTTTCCTGTTTTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10308</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>7854</contig_pos>
        <strand>+</strand>
        <context>CTTTTTTCCT[A/C]TTTGATTCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTTTGTTCCATTCAACGTTTTTTTGGTTTTGTCCCAAACTTTTTTCCT</left_flank>
        <right_flank>TTTGATTCATATTTTCTGACTCACGGAATATAATTCTGTAAACAAAAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTCAATCTGATTTTTGATCATTTGGTTTTTTTTTTAATTGAAAAAAATGATGATCCCAAAAATAGGAAAAATAAATCATTTACTATACCGTAAACTGATAGAACGCCACCCAAATCGTGAACTTTGAGCTCATGTATCTCATTTTGTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGGTGATATCATGATAAACATTTTATCAGTTAACAACTTTTTGATATCTTCCAAAAGAAGTGAGATATATAAATTCAAAGCGGATGGTCCGGGTGGCGTTCTACTAGTGTGTTTACGGTAACTTTTATTATAGAAAATTGATGAAAAATTCAGCAGGAAAGTTAAAATTTTCAGATGTTCAATCAACAAGTTGTTTGCATAATCCTTCCAAATTCAGAACCAAACTTCAGAATCACGTCATCTGGTTCTCTTTCTAGAACTTTTTTTTGTTCCATTCAACGTTTTTTTGGTTTTGTCCCAAACTTTTTTCCTATTTGATTCATATTTTCTGACTCACGGAATATAATTCTGTAAACAAAAAATTCTCTTTTTTCTTTTTCCTGTTTTCAAAACTCAAATTGTATATAAAGACGATTTTCAGACTGAAAATCATAGGCAACGTTTTGAGCTTGGTATTTCCGTATATCCTCTAATAGATGCCCAGAGAAACCGTCAACTTGAGCTTAACTATCTCAATTCCTGTGAAAGATATCAAGAAGTGGTTAACTGATAAAATATTGATAATATTATGATAAACATTTTACCAATTGAGCACTTTTTGATATCTTTTACAGGAACTGAGATATATGGGCTCAAATTTGACGGTTTGAGTGGTTCACAGGAATCGAGATAATTGAGCTTGAAGTTGACACAATTCGAGTGGGCTTCTGATAGAGGTTATACGATAATGCTATTTATTGAGAAACCCTAAACTTTATCAATATCATTATCGAAAACTCCAGATTCCTAGAAATTGAAAACAATTTTTTTTTG</canonical>
            <polymorphic>GATTTCAATCTGATTTTTGATCATTTGGTTTTTTTTTTAATTGAAAAAAATGATGATCCCAAAAATAGGAAAAATAAATCATTTACTATACCGTAAACTGATAGAACGCCACCCAAATCGTGAACTTTGAGCTCATGTATCTCATTTTGTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGGTGATATCATGATAAACATTTTATCAGTTAACAACTTTTTGATATCTTCCAAAAGAAGTGAGATATATAAATTCAAAGCGGATGGTCCGGGTGGCGTTCTACTAGTGTGTTTACGGTAACTTTTATTATAGAAAATTGATGAAAAATTCAGCAGGAAAGTTAAAATTTTCAGATGTTCAATCAACAAGTTGTTTGCATAATCCTTCCAAATTCAGAACCAAACTTCAGAATCACGTCATCTGGTTCTCTTTCTAGAACTTTTTTTTGTTCCATTCAACGTTTTTTTGGTTTTGTCCCAAACTTTTTTCCTMTTTGATTCATATTTTCTGACTCACGGAATATAATTCTGTAAACAAAAAATTCTCTTTTTTCTTTTTCCTGTTTTCAAAACTCAAATTGTATATAAAGACGATTTTCAGACTGAAAATCATAGGCAACGTTTTGAGCTTGGTATTTCCGTATATCCTCTAATAGATGCCCAGAGAAACCGTCAACTTGAGCTTAACTATCTCAATTCCTGTGAAAGATATCAAGAAGTGGTTAACTGATAAAATATTGATAATATTATGATAAACATTTTACCAATTGAGCACTTTTTGATATCTTTTACAGGAACTGAGATATATGGGCTCAAATTTGACGGTTTGAGTGGTTCACAGGAATCGAGATAATTGAGCTTGAAGTTGACACAATTCGAGTGGGCTTCTGATAGAGGTTATACGATAATGCTATTTATTGAGAAACCCTAAACTTTATCAATATCATTATCGAAAACTCCAGATTCCTAGAAATTGAAAACAATTTTTTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCAGCAGGAAAGTTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAAAACAGGAAAAAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATTCAGCAGGAAAGTTAAAATTTTCAGATGTTCAATCAACAAGTTGTTTGCATAATCCTTCCAAATTCAGAACCAAACTTCAGAATCACGTCATCTGGTTCTCTTTCTAGAACTTTTTTTTGTTCCATTCAACGTTTTTTTGGTTTTGTCCCAAACTTTTTTCCTATTTGATTCATATTTTCTGACTCACGGAATATAATTCTGTAAACAAAAAATTCTCTTTTTTCTTTTTCCTGTTTTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAATTCAGCAGGAAAGTTAAAATTTTCAGATGTTCAATCAACAAGTTGTTTGCATAATCCTTCCAAATTCAGAACCAAACTTCAGAATCACGTCATCTGGTTCTCTTTCTAGAACTTTTTTTTGTTCCATTCAACGTTTTTTTGGTTTTGTCCCAAACTTTTTTCCTMTTTGATTCATATTTTCTGACTCACGGAATATAATTCTGTAAACAAAAAATTCTCTTTTTTCTTTTTCCTGTTTTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10309</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>7878</contig_pos>
        <strand>+</strand>
        <context>TTCTGACTCA[C/T]GGAATAWAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGTTTTGTCCCAAACTTTTTTCCTATTTGATTCATATTTTCTGACTCA</left_flank>
        <right_flank>GGAATATAATTCTGTAAACAAAAAATTCTCTTTTTTCTTTTTCCTGTTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGTTTTTTTTTTAATTGAAAAAAATGATGATCCCAAAAATAGGAAAAATAAATCATTTACTATACCGTAAACTGATAGAACGCCACCCAAATCGTGAACTTTGAGCTCATGTATCTCATTTTGTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGGTGATATCATGATAAACATTTTATCAGTTAACAACTTTTTGATATCTTCCAAAAGAAGTGAGATATATAAATTCAAAGCGGATGGTCCGGGTGGCGTTCTACTAGTGTGTTTACGGTAACTTTTATTATAGAAAATTGATGAAAAATTCAGCAGGAAAGTTAAAATTTTCAGATGTTCAATCAACAAGTTGTTTGCATAATCCTTCCAAATTCAGAACCAAACTTCAGAATCACGTCATCTGGTTCTCTTTCTAGAACTTTTTTTTGTTCCATTCAACGTTTTTTTGGTTTTGTCCCAAACTTTTTTCCTATTTGATTCATATTTTCTGACTCACGGAATATAATTCTGTAAACAAAAAATTCTCTTTTTTCTTTTTCCTGTTTTCAAAACTCAAATTGTATATAAAGACGATTTTCAGACTGAAAATCATAGGCAACGTTTTGAGCTTGGTATTTCCGTATATCCTCTAATAGATGCCCAGAGAAACCGTCAACTTGAGCTTAACTATCTCAATTCCTGTGAAAGATATCAAGAAGTGGTTAACTGATAAAATATTGATAATATTATGATAAACATTTTACCAATTGAGCACTTTTTGATATCTTTTACAGGAACTGAGATATATGGGCTCAAATTTGACGGTTTGAGTGGTTCACAGGAATCGAGATAATTGAGCTTGAAGTTGACACAATTCGAGTGGGCTTCTGATAGAGGTTATACGATAATGCTATTTATTGAGAAACCCTAAACTTTATCAATATCATTATCGAAAACTCCAGATTCCTAGAAATTGAAAACAATTTTTTTTTGAAATTTGTGCAGCTTTTCTGGTTT</canonical>
            <polymorphic>TTGGTTTTTTTTTTAATTGAAAAAAATGATGATCCCAAAAATAGGAAAAATAAATCATTTACTATACCGTAAACTGATAGAACGCCACCCAAATCGTGAACTTTGAGCTCATGTATCTCATTTTGTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGGTGATATCATGATAAACATTTTATCAGTTAACAACTTTTTGATATCTTCCAAAAGAAGTGAGATATATAAATTCAAAGCGGATGGTCCGGGTGGCGTTCTACTAGTGTGTTTACGGTAACTTTTATTATAGAAAATTGATGAAAAATTCAGCAGGAAAGTTAAAATTTTCAGATGTTCAATCAACAAGTTGTTTGCATAATCCTTCCAAATTCAGAACCAAACTTCAGAATCACGTCATCTGGTTCTCTTTCTAGAACTTTTTTTTGTTCCATTCAACGTTTTTTTGGTTTTGTCCCAAACTTTTTTCCTATTTGATTCATATTTTCTGACTCAYGGAATATAATTCTGTAAACAAAAAATTCTCTTTTTTCTTTTTCCTGTTTTCAAAACTCAAATTGTATATAAAGACGATTTTCAGACTGAAAATCATAGGCAACGTTTTGAGCTTGGTATTTCCGTATATCCTCTAATAGATGCCCAGAGAAACCGTCAACTTGAGCTTAACTATCTCAATTCCTGTGAAAGATATCAAGAAGTGGTTAACTGATAAAATATTGATAATATTATGATAAACATTTTACCAATTGAGCACTTTTTGATATCTTTTACAGGAACTGAGATATATGGGCTCAAATTTGACGGTTTGAGTGGTTCACAGGAATCGAGATAATTGAGCTTGAAGTTGACACAATTCGAGTGGGCTTCTGATAGAGGTTATACGATAATGCTATTTATTGAGAAACCCTAAACTTTATCAATATCATTATCGAAAACTCCAGATTCCTAGAAATTGAAAACAATTTTTTTTTGAAATTTGTGCAGCTTTTCTGGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>188 124 120 101 87 59 57 53 33 33 29 22 17 17 15 14 11 11 5 2 2</canonical_bands>
                <polymorphic_bands>289 124 120 87 59 57 53 33 33 29 22 17 17 15 14 11 11 5 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTCAGCAGGAAAGTTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAAAACAGGAAAAAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATTCAGCAGGAAAGTTAAAATTTTCAGATGTTCAATCAACAAGTTGTTTGCATAATCCTTCCAAATTCAGAACCAAACTTCAGAATCACGTCATCTGGTTCTCTTTCTAGAACTTTTTTTTGTTCCATTCAACGTTTTTTTGGTTTTGTCCCAAACTTTTTTCCTATTTGATTCATATTTTCTGACTCACGGAATATAATTCTGTAAACAAAAAATTCTCTTTTTTCTTTTTCCTGTTTTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAATTCAGCAGGAAAGTTAAAATTTTCAGATGTTCAATCAACAAGTTGTTTGCATAATCCTTCCAAATTCAGAACCAAACTTCAGAATCACGTCATCTGGTTCTCTTTCTAGAACTTTTTTTTGTTCCATTCAACGTTTTTTTGGTTTTGTCCCAAACTTTTTTCCTATTTGATTCATATTTTCTGACTCAYGGAATATAATTCTGTAAACAAAAAATTCTCTTTTTTCTTTTTCCTGTTTTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10310</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>7885</contig_pos>
        <strand>+</strand>
        <context>TCAYGGAATA[A/T]AATTCTGTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTCCCAAACTTTTTTCCTATTTGATTCATATTTTCTGACTCACGGAATA</left_flank>
        <right_flank>AATTCTGTAAACAAAAAATTCTCTTTTTTCTTTTTCCTGTTTTCAAAACT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTAATTGAAAAAAATGATGATCCCAAAAATAGGAAAAATAAATCATTTACTATACCGTAAACTGATAGAACGCCACCCAAATCGTGAACTTTGAGCTCATGTATCTCATTTTGTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGGTGATATCATGATAAACATTTTATCAGTTAACAACTTTTTGATATCTTCCAAAAGAAGTGAGATATATAAATTCAAAGCGGATGGTCCGGGTGGCGTTCTACTAGTGTGTTTACGGTAACTTTTATTATAGAAAATTGATGAAAAATTCAGCAGGAAAGTTAAAATTTTCAGATGTTCAATCAACAAGTTGTTTGCATAATCCTTCCAAATTCAGAACCAAACTTCAGAATCACGTCATCTGGTTCTCTTTCTAGAACTTTTTTTTGTTCCATTCAACGTTTTTTTGGTTTTGTCCCAAACTTTTTTCCTATTTGATTCATATTTTCTGACTCACGGAATATAATTCTGTAAACAAAAAATTCTCTTTTTTCTTTTTCCTGTTTTCAAAACTCAAATTGTATATAAAGACGATTTTCAGACTGAAAATCATAGGCAACGTTTTGAGCTTGGTATTTCCGTATATCCTCTAATAGATGCCCAGAGAAACCGTCAACTTGAGCTTAACTATCTCAATTCCTGTGAAAGATATCAAGAAGTGGTTAACTGATAAAATATTGATAATATTATGATAAACATTTTACCAATTGAGCACTTTTTGATATCTTTTACAGGAACTGAGATATATGGGCTCAAATTTGACGGTTTGAGTGGTTCACAGGAATCGAGATAATTGAGCTTGAAGTTGACACAATTCGAGTGGGCTTCTGATAGAGGTTATACGATAATGCTATTTATTGAGAAACCCTAAACTTTATCAATATCATTATCGAAAACTCCAGATTCCTAGAAATTGAAAACAATTTTTTTTTGAAATTTGTGCAGCTTTTCTGGTTTGGTCGTA</canonical>
            <polymorphic>TTTTTTTAATTGAAAAAAATGATGATCCCAAAAATAGGAAAAATAAATCATTTACTATACCGTAAACTGATAGAACGCCACCCAAATCGTGAACTTTGAGCTCATGTATCTCATTTTGTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGGTGATATCATGATAAACATTTTATCAGTTAACAACTTTTTGATATCTTCCAAAAGAAGTGAGATATATAAATTCAAAGCGGATGGTCCGGGTGGCGTTCTACTAGTGTGTTTACGGTAACTTTTATTATAGAAAATTGATGAAAAATTCAGCAGGAAAGTTAAAATTTTCAGATGTTCAATCAACAAGTTGTTTGCATAATCCTTCCAAATTCAGAACCAAACTTCAGAATCACGTCATCTGGTTCTCTTTCTAGAACTTTTTTTTGTTCCATTCAACGTTTTTTTGGTTTTGTCCCAAACTTTTTTCCTATTTGATTCATATTTTCTGACTCACGGAATAWAATTCTGTAAACAAAAAATTCTCTTTTTTCTTTTTCCTGTTTTCAAAACTCAAATTGTATATAAAGACGATTTTCAGACTGAAAATCATAGGCAACGTTTTGAGCTTGGTATTTCCGTATATCCTCTAATAGATGCCCAGAGAAACCGTCAACTTGAGCTTAACTATCTCAATTCCTGTGAAAGATATCAAGAAGTGGTTAACTGATAAAATATTGATAATATTATGATAAACATTTTACCAATTGAGCACTTTTTGATATCTTTTACAGGAACTGAGATATATGGGCTCAAATTTGACGGTTTGAGTGGTTCACAGGAATCGAGATAATTGAGCTTGAAGTTGACACAATTCGAGTGGGCTTCTGATAGAGGTTATACGATAATGCTATTTATTGAGAAACCCTAAACTTTATCAATATCATTATCGAAAACTCCAGATTCCTAGAAATTGAAAACAATTTTTTTTTGAAATTTGTGCAGCTTTTCTGGTTTGGTCGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTGCATAATCCTTCCAAAT</pcr_primer_p1>
		<pcr_primer_p2>ACGTTGCCTATGATTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTGCATAATCCTTCCAAATTCAGAACCAAACTTCAGAATCACGTCATCTGGTTCTCTTTCTAGAACTTTTTTTTGTTCCATTCAACGTTTTTTTGGTTTTGTCCCAAACTTTTTTCCTATTTGATTCATATTTTCTGACTCACGGAATATAATTCTGTAAACAAAAAATTCTCTTTTTTCTTTTTCCTGTTTTCAAAACTCAAATTGTATATAAAGACGATTTTCAGACTGAAAATCATAGGCAACGT</canonical_amplicon>
		<polymorphic_amplicon>GTTTGCATAATCCTTCCAAATTCAGAACCAAACTTCAGAATCACGTCATCTGGTTCTCTTTCTAGAACTTTTTTTTGTTCCATTCAACGTTTTTTTGGTTTTGTCCCAAACTTTTTTCCTATTTGATTCATATTTTCTGACTCACGGAATAWAATTCTGTAAACAAAAAATTCTCTTTTTTCTTTTTCCTGTTTTCAAAACTCAAATTGTATATAAAGACGATTTTCAGACTGAAAATCATAGGCAACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10311</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>7902</contig_pos>
        <strand>+</strand>
        <context>GTAAACAAAA[A/T]ATTCTCTKTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTATTTGATTCATATTTTCTGACTCACGGAATATAATTCTGTAAACAAAA</left_flank>
        <right_flank>ATTCTCTTTTTTCTTTTTCCTGTTTTCAAAACTCAAATTGTATATAAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGATGATCCCAAAAATAGGAAAAATAAATCATTTACTATACCGTAAACTGATAGAACGCCACCCAAATCGTGAACTTTGAGCTCATGTATCTCATTTTGTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGGTGATATCATGATAAACATTTTATCAGTTAACAACTTTTTGATATCTTCCAAAAGAAGTGAGATATATAAATTCAAAGCGGATGGTCCGGGTGGCGTTCTACTAGTGTGTTTACGGTAACTTTTATTATAGAAAATTGATGAAAAATTCAGCAGGAAAGTTAAAATTTTCAGATGTTCAATCAACAAGTTGTTTGCATAATCCTTCCAAATTCAGAACCAAACTTCAGAATCACGTCATCTGGTTCTCTTTCTAGAACTTTTTTTTGTTCCATTCAACGTTTTTTTGGTTTTGTCCCAAACTTTTTTCCTATTTGATTCATATTTTCTGACTCACGGAATATAATTCTGTAAACAAAAAATTCTCTTTTTTCTTTTTCCTGTTTTCAAAACTCAAATTGTATATAAAGACGATTTTCAGACTGAAAATCATAGGCAACGTTTTGAGCTTGGTATTTCCGTATATCCTCTAATAGATGCCCAGAGAAACCGTCAACTTGAGCTTAACTATCTCAATTCCTGTGAAAGATATCAAGAAGTGGTTAACTGATAAAATATTGATAATATTATGATAAACATTTTACCAATTGAGCACTTTTTGATATCTTTTACAGGAACTGAGATATATGGGCTCAAATTTGACGGTTTGAGTGGTTCACAGGAATCGAGATAATTGAGCTTGAAGTTGACACAATTCGAGTGGGCTTCTGATAGAGGTTATACGATAATGCTATTTATTGAGAAACCCTAAACTTTATCAATATCATTATCGAAAACTCCAGATTCCTAGAAATTGAAAACAATTTTTTTTTGAAATTTGTGCAGCTTTTCTGGTTTGGTCGTAACTTTTAAAATATTGCT</canonical>
            <polymorphic>AATGATGATCCCAAAAATAGGAAAAATAAATCATTTACTATACCGTAAACTGATAGAACGCCACCCAAATCGTGAACTTTGAGCTCATGTATCTCATTTTGTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGGTGATATCATGATAAACATTTTATCAGTTAACAACTTTTTGATATCTTCCAAAAGAAGTGAGATATATAAATTCAAAGCGGATGGTCCGGGTGGCGTTCTACTAGTGTGTTTACGGTAACTTTTATTATAGAAAATTGATGAAAAATTCAGCAGGAAAGTTAAAATTTTCAGATGTTCAATCAACAAGTTGTTTGCATAATCCTTCCAAATTCAGAACCAAACTTCAGAATCACGTCATCTGGTTCTCTTTCTAGAACTTTTTTTTGTTCCATTCAACGTTTTTTTGGTTTTGTCCCAAACTTTTTTCCTATTTGATTCATATTTTCTGACTCACGGAATATAATTCTGTAAACAAAAWATTCTCTTTTTTCTTTTTCCTGTTTTCAAAACTCAAATTGTATATAAAGACGATTTTCAGACTGAAAATCATAGGCAACGTTTTGAGCTTGGTATTTCCGTATATCCTCTAATAGATGCCCAGAGAAACCGTCAACTTGAGCTTAACTATCTCAATTCCTGTGAAAGATATCAAGAAGTGGTTAACTGATAAAATATTGATAATATTATGATAAACATTTTACCAATTGAGCACTTTTTGATATCTTTTACAGGAACTGAGATATATGGGCTCAAATTTGACGGTTTGAGTGGTTCACAGGAATCGAGATAATTGAGCTTGAAGTTGACACAATTCGAGTGGGCTTCTGATAGAGGTTATACGATAATGCTATTTATTGAGAAACCCTAAACTTTATCAATATCATTATCGAAAACTCCAGATTCCTAGAAATTGAAAACAATTTTTTTTTGAAATTTGTGCAGCTTTTCTGGTTTGGTCGTAACTTTTAAAATATTGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>275 210 179 150 75 47 45 19</canonical_bands>
                <polymorphic_bands>425 210 179 75 47 45 19</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>210 134 118 99 71 64 50 47 45 36 36 21 19 16 13 11 10</canonical_bands>
                <polymorphic_bands>210 134 118 99 71 64 52 50 47 45 36 21 19 13 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTGCATAATCCTTCCAAAT</pcr_primer_p1>
		<pcr_primer_p2>ACGTTGCCTATGATTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTGCATAATCCTTCCAAATTCAGAACCAAACTTCAGAATCACGTCATCTGGTTCTCTTTCTAGAACTTTTTTTTGTTCCATTCAACGTTTTTTTGGTTTTGTCCCAAACTTTTTTCCTATTTGATTCATATTTTCTGACTCACGGAATATAATTCTGTAAACAAAAAATTCTCTTTTTTCTTTTTCCTGTTTTCAAAACTCAAATTGTATATAAAGACGATTTTCAGACTGAAAATCATAGGCAACGT</canonical_amplicon>
		<polymorphic_amplicon>GTTTGCATAATCCTTCCAAATTCAGAACCAAACTTCAGAATCACGTCATCTGGTTCTCTTTCTAGAACTTTTTTTTGTTCCATTCAACGTTTTTTTGGTTTTGTCCCAAACTTTTTTCCTATTTGATTCATATTTTCTGACTCACGGAATATAATTCTGTAAACAAAAWATTCTCTTTTTTCTTTTTCCTGTTTTCAAAACTCAAATTGTATATAAAGACGATTTTCAGACTGAAAATCATAGGCAACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10313</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>7947</contig_pos>
        <strand></strand>
        <context>AAATTGTATA[T/G]AAAGACGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CAAAAAATTCTCTTTTTTCTTTTTCCTGTTTTCAAAACTCAAATTGTATA</left_flank>
        <right_flank>AAAGACGATTTTCAGACTGAAAATCATAGGCAACGTTTTGAGCTTGGTAT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAACTGATAGAACGCCACCCAAATCGTGAACTTTGAGCTCATGTATCTCATTTTGTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGGTGATATCATGATAAACATTTTATCAGTTAACAACTTTTTGATATCTTCCAAAAGAAGTGAGATATATAAATTCAAAGCGGATGGTCCGGGTGGCGTTCTACTAGTGTGTTTACGGTAACTTTTATTATAGAAAATTGATGAAAAATTCAGCAGGAAAGTTAAAATTTTCAGATGTTCAATCAACAAGTTGTTTGCATAATCCTTCCAAATTCAGAACCAAACTTCAGAATCACGTCATCTGGTTCTCTTTCTAGAACTTTTTTTTGTTCCATTCAACGTTTTTTTGGTTTTGTCCCAAACTTTTTTCCTATTTGATTCATATTTTCTGACTCACGGAATATAATTCTGTAAACAAAAAATTCTCTTTTTTCTTTTTCCTGTTTTCAAAACTCAAATTGTATATAAAGACGATTTTCAGACTGAAAATCATAGGCAACGTTTTGAGCTTGGTATTTCCGTATATCCTCTAATAGATGCCCAGAGAAACCGTCAACTTGAGCTTAACTATCTCAATTCCTGTGAAAGATATCAAGAAGTGGTTAACTGATAAAATATTGATAATATTATGATAAACATTTTACCAATTGAGCACTTTTTGATATCTTTTACAGGAACTGAGATATATGGGCTCAAATTTGACGGTTTGAGTGGTTCACAGGAATCGAGATAATTGAGCTTGAAGTTGACACAATTCGAGTGGGCTTCTGATAGAGGTTATACGATAATGCTATTTATTGAGAAACCCTAAACTTTATCAATATCATTATCGAAAACTCCAGATTCCTAGAAATTGAAAACAATTTTTTTTTGAAATTTGTGCAGCTTTTCTGGTTTGGTCGTAACTTTTAAAATATTGCTTCAAATTTTGTGTAACCTATATTTCTGAATTTGTCTTGTTATGAG</canonical>
            <polymorphic>TAAACTGATAGAACGCCACCCAAATCGTGAACTTTGAGCTCATGTATCTCATTTTGTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGGTGATATCATGATAAACATTTTATCAGTTAACAACTTTTTGATATCTTCCAAAAGAAGTGAGATATATAAATTCAAAGCGGATGGTCCGGGTGGCGTTCTACTAGTGTGTTTACGGTAACTTTTATTATAGAAAATTGATGAAAAATTCAGCAGGAAAGTTAAAATTTTCAGATGTTCAATCAACAAGTTGTTTGCATAATCCTTCCAAATTCAGAACCAAACTTCAGAATCACGTCATCTGGTTCTCTTTCTAGAACTTTTTTTTGTTCCATTCAACGTTTTTTTGGTTTTGTCCCAAACTTTTTTCCTATTTGATTCATATTTTCTGACTCACGGAATATAATTCTGTAAACAAAAAATTCTCTTTTTTCTTTTTCCTGTTTTCAAAACTCAAATTGTATAKAAAGACGATTTTCAGACTGAAAATCATAGGCAACGTTTTGAGCTTGGTATTTCCGTATATCCTCTAATAGATGCCCAGAGAAACCGTCAACTTGAGCTTAACTATCTCAATTCCTGTGAAAGATATCAAGAAGTGGTTAACTGATAAAATATTGATAATATTATGATAAACATTTTACCAATTGAGCACTTTTTGATATCTTTTACAGGAACTGAGATATATGGGCTCAAATTTGACGGTTTGAGTGGTTCACAGGAATCGAGATAATTGAGCTTGAAGTTGACACAATTCGAGTGGGCTTCTGATAGAGGTTATACGATAATGCTATTTATTGAGAAACCCTAAACTTTATCAATATCATTATCGAAAACTCCAGATTCCTAGAAATTGAAAACAATTTTTTTTTGAAATTTGTGCAGCTTTTCTGGTTTGGTCGTAACTTTTAAAATATTGCTTCAAATTTTGTGTAACCTATATTTCTGAATTTGTCTTGTTATGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTTGTCCCAAACTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTAGGGTTTCTCAATAAATAGCA</pcr_primer_p2>
		<pcr_amplicon_size>463</pcr_amplicon_size>
		<canonical_amplicon>GGTTTTGTCCCAAACTTTTTTCCTATTTGATTCATATTTTCTGACTCACGGAATATAATTCTGTAAACAAAAAATTCTCTTTTTTCTTTTTCCTGTTTTCAAAACTCAAATTGTATATAAAGACGATTTTCAGACTGAAAATCATAGGCAACGTTTTGAGCTTGGTATTTCCGTATATCCTCTAATAGATGCCCAGAGAAACCGTCAACTTGAGCTTAACTATCTCAATTCCTGTGAAAGATATCAAGAAGTGGTTAACTGATAAAATATTGATAATATTATGATAAACATTTTACCAATTGAGCACTTTTTGATATCTTTTACAGGAACTGAGATATATGGGCTCAAATTTGACGGTTTGAGTGGTTCACAGGAATCGAGATAATTGAGCTTGAAGTTGACACAATTCGAGTGGGCTTCTGATAGAGGTTATACGATAATGCTATTTATTGAGAAACCCTAA</canonical_amplicon>
		<polymorphic_amplicon>GGTTTTGTCCCAAACTTTTTTCCTATTTGATTCATATTTTCTGACTCACGGAATATAATTCTGTAAACAAAAAATTCTCTTTTTTCTTTTTCCTGTTTTCAAAACTCAAATTGTATAKAAAGACGATTTTCAGACTGAAAATCATAGGCAACGTTTTGAGCTTGGTATTTCCGTATATCCTCTAATAGATGCCCAGAGAAACCGTCAACTTGAGCTTAACTATCTCAATTCCTGTGAAAGATATCAAGAAGTGGTTAACTGATAAAATATTGATAATATTATGATAAACATTTTACCAATTGAGCACTTTTTGATATCTTTTACAGGAACTGAGATATATGGGCTCAAATTTGACGGTTTGAGTGGTTCACAGGAATCGAGATAATTGAGCTTGAAGTTGACACAATTCGAGTGGGCTTCTGATAGAGGTTATACGATAATGCTATTTATTGAGAAACCCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10404</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>9575</contig_pos>
        <strand>+</strand>
        <context>TCAGAATTTT[C/T]TTTCTCTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAATTTCTATTCAATTTTCCGGATTTCACCTTGTTCTGTTCAGAATTTT</left_flank>
        <right_flank>TTTCTCTTTTATTCTAATTCTGTCTACTAATTAAAAATTAATTGAATTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCGAGAGAAGAAGAATCACAAAAAGCTTTCTTTTTGAGTGTAAACTTTCTCGGGTGAAAGCCAGAATATGTCAGTTAGTCCAGTGTGCTCCAGGGGCTCTCGAGAGCTCTCATTCTATTTCGATTTCTAGTTTTCAAAAGCTGCCAAACATTCTTGAATCCTGATTCTTGGAAAAAGTCTTTGAAAACCTTTAAAAATCTCTGAAATCCTATAAAAAATATTAAATTAATATTGATTCCCTTAACAATACCGTAAACACTCTAATAGGATGCCACCCGGACCGTCCATTTTGAGCCCAGATATCTCGGTTTCTGTGAGAGATATCAAATAGTTGTTAACAAATAAAATGTTTATCATGATATCAGCAACATTTCATTAGTTAACCACTTTTTGATATCCCTCACAGAAAATGAGATACATGGGCTCAAATTTGACGGATCGGGTAGCCAAATTTCTATTCAATTTTCCGGATTTCACCTTGTTCTGTTCAGAATTTTTTTTCTCTTTTATTCTAATTCTGTCTACTAATTAAAAATTAATTGAATTACACCTAATTTCCAGCTCTAATCATGTTCAAGTACCTTCTCGTCGTCATCCTCCTCATCGCTCTTATCGAGTTGGCCACCGCCGATTTCTCGTGCTATTTCTCGGATTCCATCTGCAAATCGATCACCTGCAGAGTGAGTTAATTAATCCTAATTATCCATGATTAATTTTAATTTAAAAATTTTCCAGAACTGCAAAGTGGCCACCTGCATCACCGGAGACTGCGTCTGCACTCTTTGCGACCTTTAAATTTTTTTTTAAAAATTCTTTTTTATTCCTTGCCATTTTTAAACATCCCCAACTCTCCTGAAAAATATGGCCTTCCAATTGAAAAAATTAAAGAAATATTGAATAAACGAATACCGAAAAATGATGTATTTTAAAGTTTCCAAGGAAAATAGATTCGTAGATTCTGAAAAATGGTCCCAGAAGCTTGGAATTGTGTTTTTCTG</canonical>
            <polymorphic>AAGCGAGAGAAGAAGAATCACAAAAAGCTTTCTTTTTGAGTGTAAACTTTCTCGGGTGAAAGCCAGAATATGTCAGTTAGTCCAGTGTGCTCCAGGGGCTCTCGAGAGCTCTCATTCTATTTCGATTTCTAGTTTTCAAAAGCTGCCAAACATTCTTGAATCCTGATTCTTGGAAAAAGTCTTTGAAAACCTTTAAAAATCTCTGAAATCCTATAAAAAATATTAAATTAATATTGATTCCCTTAACAATACCGTAAACACTCTAATAGGATGCCACCCGGACCGTCCATTTTGAGCCCAGATATCTCGGTTTCTGTGAGAGATATCAAATAGTTGTTAACAAATAAAATGTTTATCATGATATCAGCAACATTTCATTAGTTAACCACTTTTTGATATCCCTCACAGAAAATGAGATACATGGGCTCAAATTTGACGGATCGGGTAGCCAAATTTCTATTCAATTTTCCGGATTTCACCTTGTTCTGTTCAGAATTTTYTTTCTCTTTTATTCTAATTCTGTCTACTAATTAAAAATTAATTGAATTACACCTAATTTCCAGCTCTAATCATGTTCAAGTACCTTCTCGTCGTCATCCTCCTCATCGCTCTTATCGAGTTGGCCACCGCCGATTTCTCGTGCTATTTCTCGGATTCCATCTGCAAATCGATCACCTGCAGAGTGAGTTAATTAATCCTAATTATCCATGATTAATTTTAATTTAAAAATTTTCCAGAACTGCAAAGTGGCCACCTGCATCACCGGAGACTGCGTCTGCACTCTTTGCGACCTTTAAATTTTTTTTTAAAAATTCTTTTTTATTCCTTGCCATTTTTAAACATCCCCAACTCTCCTGAAAAATATGGCCTTCCAATTGAAAAAATTAAAGAAATATTGAATAAACGAATACCGAAAAATGATGTATTTTAAAGTTTCCAAGGAAAATAGATTCGTAGATTCTGAAAAATGGTCCCAGAAGCTTGGAATTGTGTTTTTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAACCTTTAAAAATCTCTGA</pcr_primer_p1>
		<pcr_primer_p2>TTAGAGCTGGAAATTAGGTGTAA</pcr_primer_p2>
		<pcr_amplicon_size>386</pcr_amplicon_size>
		<canonical_amplicon>TGAAAACCTTTAAAAATCTCTGAAATCCTATAAAAAATATTAAATTAATATTGATTCCCTTAACAATACCGTAAACACTCTAATAGGATGCCACCCGGACCGTCCATTTTGAGCCCAGATATCTCGGTTTCTGTGAGAGATATCAAATAGTTGTTAACAAATAAAATGTTTATCATGATATCAGCAACATTTCATTAGTTAACCACTTTTTGATATCCCTCACAGAAAATGAGATACATGGGCTCAAATTTGACGGATCGGGTAGCCAAATTTCTATTCAATTTTCCGGATTTCACCTTGTTCTGTTCAGAATTTTTTTTCTCTTTTATTCTAATTCTGTCTACTAATTAAAAATTAATTGAATTACACCTAATTTCCAGCTCTAA</canonical_amplicon>
		<polymorphic_amplicon>TGAAAACCTTTAAAAATCTCTGAAATCCTATAAAAAATATTAAATTAATATTGATTCCCTTAACAATACCGTAAACACTCTAATAGGATGCCACCCGGACCGTCCATTTTGAGCCCAGATATCTCGGTTTCTGTGAGAGATATCAAATAGTTGTTAACAAATAAAATGTTTATCATGATATCAGCAACATTTCATTAGTTAACCACTTTTTGATATCCCTCACAGAAAATGAGATACATGGGCTCAAATTTGACGGATCGGGTAGCCAAATTTCTATTCAATTTTCCGGATTTCACCTTGTTCTGTTCAGAATTTTYTTTCTCTTTTATTCTAATTCTGTCTACTAATTAAAAATTAATTGAATTACACCTAATTTCCAGCTCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10405</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>9741</contig_pos>
        <strand>+</strand>
        <context>TCCATCTGCA[A/T]ATCGATCACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGAGTTGGCCACCGCCGATTTCTCGTGCTATTTCTCGGATTCCATCTGCA</left_flank>
        <right_flank>ATCGATCACCTGCAGAGTGAGTTAATTAATCCTAATTATCCATGATTAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTGGAAAAAGTCTTTGAAAACCTTTAAAAATCTCTGAAATCCTATAAAAAATATTAAATTAATATTGATTCCCTTAACAATACCGTAAACACTCTAATAGGATGCCACCCGGACCGTCCATTTTGAGCCCAGATATCTCGGTTTCTGTGAGAGATATCAAATAGTTGTTAACAAATAAAATGTTTATCATGATATCAGCAACATTTCATTAGTTAACCACTTTTTGATATCCCTCACAGAAAATGAGATACATGGGCTCAAATTTGACGGATCGGGTAGCCAAATTTCTATTCAATTTTCCGGATTTCACCTTGTTCTGTTCAGAATTTTTTTTCTCTTTTATTCTAATTCTGTCTACTAATTAAAAATTAATTGAATTACACCTAATTTCCAGCTCTAATCATGTTCAAGTACCTTCTCGTCGTCATCCTCCTCATCGCTCTTATCGAGTTGGCCACCGCCGATTTCTCGTGCTATTTCTCGGATTCCATCTGCAAATCGATCACCTGCAGAGTGAGTTAATTAATCCTAATTATCCATGATTAATTTTAATTTAAAAATTTTCCAGAACTGCAAAGTGGCCACCTGCATCACCGGAGACTGCGTCTGCACTCTTTGCGACCTTTAAATTTTTTTTTAAAAATTCTTTTTTATTCCTTGCCATTTTTAAACATCCCCAACTCTCCTGAAAAATATGGCCTTCCAATTGAAAAAATTAAAGAAATATTGAATAAACGAATACCGAAAAATGATGTATTTTAAAGTTTCCAAGGAAAATAGATTCGTAGATTCTGAAAAATGGTCCCAGAAGCTTGGAATTGTGTTTTTCTGGATTTAACACAGTTGATTAAAGTTGTGACAATTTGTTTTGGTAGTTCTGAATTGTCCATTTTGAAAATTCAGATTTTATGCATTTTCCGAAAATAATAAAACTACAGAATTTCTATGAAATTATAAAACTTTAAAGGTGGTGGGACATGAAAAAATAATGTTCTCG</canonical>
            <polymorphic>TTCTTGGAAAAAGTCTTTGAAAACCTTTAAAAATCTCTGAAATCCTATAAAAAATATTAAATTAATATTGATTCCCTTAACAATACCGTAAACACTCTAATAGGATGCCACCCGGACCGTCCATTTTGAGCCCAGATATCTCGGTTTCTGTGAGAGATATCAAATAGTTGTTAACAAATAAAATGTTTATCATGATATCAGCAACATTTCATTAGTTAACCACTTTTTGATATCCCTCACAGAAAATGAGATACATGGGCTCAAATTTGACGGATCGGGTAGCCAAATTTCTATTCAATTTTCCGGATTTCACCTTGTTCTGTTCAGAATTTTTTTTCTCTTTTATTCTAATTCTGTCTACTAATTAAAAATTAATTGAATTACACCTAATTTCCAGCTCTAATCATGTTCAAGTACCTTCTCGTCGTCATCCTCCTCATCGCTCTTATCGAGTTGGCCACCGCCGATTTCTCGTGCTATTTCTCGGATTCCATCTGCAWATCGATCACCTGCAGAGTGAGTTAATTAATCCTAATTATCCATGATTAATTTTAATTTAAAAATTTTCCAGAACTGCAAAGTGGCCACCTGCATCACCGGAGACTGCGTCTGCACTCTTTGCGACCTTTAAATTTTTTTTTAAAAATTCTTTTTTATTCCTTGCCATTTTTAAACATCCCCAACTCTCCTGAAAAATATGGCCTTCCAATTGAAAAAATTAAAGAAATATTGAATAAACGAATACCGAAAAATGATGTATTTTAAAGTTTCCAAGGAAAATAGATTCGTAGATTCTGAAAAATGGTCCCAGAAGCTTGGAATTGTGTTTTTCTGGATTTAACACAGTTGATTAAAGTTGTGACAATTTGTTTTGGTAGTTCTGAATTGTCCATTTTGAAAATTCAGATTTTATGCATTTTCCGAAAATAATAAAACTACAGAATTTCTATGAAATTATAAAACTTTAAAGGTGGTGGGACATGAAAAAATAATGTTCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCATCGCTCTTATCGAGTT</pcr_primer_p1>
		<pcr_primer_p2>AGGAGAGTTGGGGATGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CTCATCGCTCTTATCGAGTTGGCCACCGCCGATTTCTCGTGCTATTTCTCGGATTCCATCTGCAAATCGATCACCTGCAGAGTGAGTTAATTAATCCTAATTATCCATGATTAATTTTAATTTAAAAATTTTCCAGAACTGCAAAGTGGCCACCTGCATCACCGGAGACTGCGTCTGCACTCTTTGCGACCTTTAAATTTTTTTTTAAAAATTCTTTTTTATTCCTTGCCATTTTTAAACATCCCCAACTCTCCT</canonical_amplicon>
		<polymorphic_amplicon>CTCATCGCTCTTATCGAGTTGGCCACCGCCGATTTCTCGTGCTATTTCTCGGATTCCATCTGCAWATCGATCACCTGCAGAGTGAGTTAATTAATCCTAATTATCCATGATTAATTTTAATTTAAAAATTTTCCAGAACTGCAAAGTGGCCACCTGCATCACCGGAGACTGCGTCTGCACTCTTTGCGACCTTTAAATTTTTTTTTAAAAATTCTTTTTTATTCCTTGCCATTTTTAAACATCCCCAACTCTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10459</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>9942</contig_pos>
        <strand>+</strand>
        <context>GAAAAATATG[C/G]CCTTCCAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTTATTCCTTGCCATTTTTAAACATCCCCAACTCTCCTGAAAAATATG</left_flank>
        <right_flank>CCTTCCAATTGAAAAAATTAAAGAAATATTGAATAAACGAATACCGAAAA</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACATTTCATTAGTTAACCACTTTTTGATATCCCTCACAGAAAATGAGATACATGGGCTCAAATTTGACGGATCGGGTAGCCAAATTTCTATTCAATTTTCCGGATTTCACCTTGTTCTGTTCAGAATTTTTTTTCTCTTTTATTCTAATTCTGTCTACTAATTAAAAATTAATTGAATTACACCTAATTTCCAGCTCTAATCATGTTCAAGTACCTTCTCGTCGTCATCCTCCTCATCGCTCTTATCGAGTTGGCCACCGCCGATTTCTCGTGCTATTTCTCGGATTCCATCTGCAAATCGATCACCTGCAGAGTGAGTTAATTAATCCTAATTATCCATGATTAATTTTAATTTAAAAATTTTCCAGAACTGCAAAGTGGCCACCTGCATCACCGGAGACTGCGTCTGCACTCTTTGCGACCTTTAAATTTTTTTTTAAAAATTCTTTTTTATTCCTTGCCATTTTTAAACATCCCCAACTCTCCTGAAAAATATGGCCTTCCAATTGAAAAAATTAAAGAAATATTGAATAAACGAATACCGAAAAATGATGTATTTTAAAGTTTCCAAGGAAAATAGATTCGTAGATTCTGAAAAATGGTCCCAGAAGCTTGGAATTGTGTTTTTCTGGATTTAACACAGTTGATTAAAGTTGTGACAATTTGTTTTGGTAGTTCTGAATTGTCCATTTTGAAAATTCAGATTTTATGCATTTTCCGAAAATAATAAAACTACAGAATTTCTATGAAATTATAAAACTTTAAAGGTGGTGGGACATGAAAAAATAATGTTCTCGAAATTCCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGTTTGCATACATGAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAA</canonical>
            <polymorphic>CAACATTTCATTAGTTAACCACTTTTTGATATCCCTCACAGAAAATGAGATACATGGGCTCAAATTTGACGGATCGGGTAGCCAAATTTCTATTCAATTTTCCGGATTTCACCTTGTTCTGTTCAGAATTTTTTTTCTCTTTTATTCTAATTCTGTCTACTAATTAAAAATTAATTGAATTACACCTAATTTCCAGCTCTAATCATGTTCAAGTACCTTCTCGTCGTCATCCTCCTCATCGCTCTTATCGAGTTGGCCACCGCCGATTTCTCGTGCTATTTCTCGGATTCCATCTGCAAATCGATCACCTGCAGAGTGAGTTAATTAATCCTAATTATCCATGATTAATTTTAATTTAAAAATTTTCCAGAACTGCAAAGTGGCCACCTGCATCACCGGAGACTGCGTCTGCACTCTTTGCGACCTTTAAATTTTTTTTTAAAAATTCTTTTTTATTCCTTGCCATTTTTAAACATCCCCAACTCTCCTGAAAAATATGSCCTTCCAATTGAAAAAATTAAAGAAATATTGAATAAACGAATACCGAAAAATGATGTATTTTAAAGTTTCCAAGGAAAATAGATTCGTAGATTCTGAAAAATGGTCCCAGAAGCTTGGAATTGTGTTTTTCTGGATTTAACACAGTTGATTAAAGTTGTGACAATTTGTTTTGGTAGTTCTGAATTGTCCATTTTGAAAATTCAGATTTTATGCATTTTCCGAAAATAATAAAACTACAGAATTTCTATGAAATTATAAAACTTTAAAGGTGGTGGGACATGAAAAAATAATGTTCTCGAAATTCCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGTTTGCATACATGAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 256 127 117</canonical_bands>
                <polymorphic_bands>617 256 127</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>266 127 117 115 113 60 58 58 57 23 6</canonical_bands>
                <polymorphic_bands>266 230 127 115 60 58 58 57 23 6</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 256 127 117</canonical_bands>
                <polymorphic_bands>617 256 127</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTTCTCGGATTCCATCTG</pcr_primer_p1>
		<pcr_primer_p2>TTCCTTGGAAACTTTAAAATACA</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>TATTTCTCGGATTCCATCTGCAAATCGATCACCTGCAGAGTGAGTTAATTAATCCTAATTATCCATGATTAATTTTAATTTAAAAATTTTCCAGAACTGCAAAGTGGCCACCTGCATCACCGGAGACTGCGTCTGCACTCTTTGCGACCTTTAAATTTTTTTTTAAAAATTCTTTTTTATTCCTTGCCATTTTTAAACATCCCCAACTCTCCTGAAAAATATGGCCTTCCAATTGAAAAAATTAAAGAAATATTGAATAAACGAATACCGAAAAATGATGTATTTTAAAGTTTCCAAGGAA</canonical_amplicon>
		<polymorphic_amplicon>TATTTCTCGGATTCCATCTGCAAATCGATCACCTGCAGAGTGAGTTAATTAATCCTAATTATCCATGATTAATTTTAATTTAAAAATTTTCCAGAACTGCAAAGTGGCCACCTGCATCACCGGAGACTGCGTCTGCACTCTTTGCGACCTTTAAATTTTTTTTTAAAAATTCTTTTTTATTCCTTGCCATTTTTAAACATCCCCAACTCTCCTGAAAAATATGSCCTTCCAATTGAAAAAATTAAAGAAATATTGAATAAACGAATACCGAAAAATGATGTATTTTAAAGTTTCCAAGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10460</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>10172</contig_pos>
        <strand>+</strand>
        <context>CCGAAAATAA[A/T]AAAACTACAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGAATTGTCCATTTTGAAAATTCAGATTTTATGCATTTTCCGAAAATAA</left_flank>
        <right_flank>AAAACTACAGAATTTCTATGAAATTATAAAACTTTAAAGGTGGTGGGACA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCCTCATCGCTCTTATCGAGTTGGCCACCGCCGATTTCTCGTGCTATTTCTCGGATTCCATCTGCAAATCGATCACCTGCAGAGTGAGTTAATTAATCCTAATTATCCATGATTAATTTTAATTTAAAAATTTTCCAGAACTGCAAAGTGGCCACCTGCATCACCGGAGACTGCGTCTGCACTCTTTGCGACCTTTAAATTTTTTTTTAAAAATTCTTTTTTATTCCTTGCCATTTTTAAACATCCCCAACTCTCCTGAAAAATATGGCCTTCCAATTGAAAAAATTAAAGAAATATTGAATAAACGAATACCGAAAAATGATGTATTTTAAAGTTTCCAAGGAAAATAGATTCGTAGATTCTGAAAAATGGTCCCAGAAGCTTGGAATTGTGTTTTTCTGGATTTAACACAGTTGATTAAAGTTGTGACAATTTGTTTTGGTAGTTCTGAATTGTCCATTTTGAAAATTCAGATTTTATGCATTTTCCGAAAATAATAAAACTACAGAATTTCTATGAAATTATAAAACTTTAAAGGTGGTGGGACATGAAAAAATAATGTTCTCGAAATTCCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGTTTGCATACATGAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCTCCACCTTTAAAAATTCAAAATTTCCTTGTTCAAGAAAACAACAACTTTCAGAAACCCTCAAAATGTTCTCTGAATATTAGGAATTTTTGGGTTCCACTTTTTCCAATTTTCAGCTAGATCACACTTACCCGATGAGCCGGCCAACAAGTATCATCGTCAGAATCAAGAGAATGAGCAATAAAGAAGATTCTTCAGTTATCTCA</canonical>
            <polymorphic>CCTCCTCATCGCTCTTATCGAGTTGGCCACCGCCGATTTCTCGTGCTATTTCTCGGATTCCATCTGCAAATCGATCACCTGCAGAGTGAGTTAATTAATCCTAATTATCCATGATTAATTTTAATTTAAAAATTTTCCAGAACTGCAAAGTGGCCACCTGCATCACCGGAGACTGCGTCTGCACTCTTTGCGACCTTTAAATTTTTTTTTAAAAATTCTTTTTTATTCCTTGCCATTTTTAAACATCCCCAACTCTCCTGAAAAATATGGCCTTCCAATTGAAAAAATTAAAGAAATATTGAATAAACGAATACCGAAAAATGATGTATTTTAAAGTTTCCAAGGAAAATAGATTCGTAGATTCTGAAAAATGGTCCCAGAAGCTTGGAATTGTGTTTTTCTGGATTTAACACAGTTGATTAAAGTTGTGACAATTTGTTTTGGTAGTTCTGAATTGTCCATTTTGAAAATTCAGATTTTATGCATTTTCCGAAAATAAWAAAACTACAGAATTTCTATGAAATTATAAAACTTTAAAGGTGGTGGGACATGAAAAAATAATGTTCTCGAAATTCCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGTTTGCATACATGAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCTCCACCTTTAAAAATTCAAAATTTCCTTGTTCAAGAAAACAACAACTTTCAGAAACCCTCAAAATGTTCTCTGAATATTAGGAATTTTTGGGTTCCACTTTTTCCAATTTTCAGCTAGATCACACTTACCCGATGAGCCGGCCAACAAGTATCATCGTCAGAATCAAGAGAATGAGCAATAAAGAAGATTCTTCAGTTATCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGTTCTGAATTGTCCATTTTG</pcr_primer_p1>
		<pcr_primer_p2>TACAACGCTTAATGTCACTCTG</pcr_primer_p2>
		<pcr_amplicon_size>293</pcr_amplicon_size>
		<canonical_amplicon>GTAGTTCTGAATTGTCCATTTTGAAAATTCAGATTTTATGCATTTTCCGAAAATAATAAAACTACAGAATTTCTATGAAATTATAAAACTTTAAAGGTGGTGGGACATGAAAAAATAATGTTCTCGAAATTCCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGTTTGCATACATGAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTA</canonical_amplicon>
		<polymorphic_amplicon>GTAGTTCTGAATTGTCCATTTTGAAAATTCAGATTTTATGCATTTTCCGAAAATAAWAAAACTACAGAATTTCTATGAAATTATAAAACTTTAAAGGTGGTGGGACATGAAAAAATAATGTTCTCGAAATTCCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGTTTGCATACATGAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10461</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>10096</contig_pos>
        <strand>+</strand>
        <context>AGTTGATTAA[A/C]GTTGTGACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTCCCAGAAGCTTGGAATTGTGTTTTTCTGGATTTAACACAGTTGATTAA</left_flank>
        <right_flank>GTTGTGACAATTTGTTTTGGTAGTTCTGAATTGTCCATTTTGAAAATTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTACTAATTAAAAATTAATTGAATTACACCTAATTTCCAGCTCTAATCATGTTCAAGTACCTTCTCGTCGTCATCCTCCTCATCGCTCTTATCGAGTTGGCCACCGCCGATTTCTCGTGCTATTTCTCGGATTCCATCTGCAAATCGATCACCTGCAGAGTGAGTTAATTAATCCTAATTATCCATGATTAATTTTAATTTAAAAATTTTCCAGAACTGCAAAGTGGCCACCTGCATCACCGGAGACTGCGTCTGCACTCTTTGCGACCTTTAAATTTTTTTTTAAAAATTCTTTTTTATTCCTTGCCATTTTTAAACATCCCCAACTCTCCTGAAAAATATGGCCTTCCAATTGAAAAAATTAAAGAAATATTGAATAAACGAATACCGAAAAATGATGTATTTTAAAGTTTCCAAGGAAAATAGATTCGTAGATTCTGAAAAATGGTCCCAGAAGCTTGGAATTGTGTTTTTCTGGATTTAACACAGTTGATTAAAGTTGTGACAATTTGTTTTGGTAGTTCTGAATTGTCCATTTTGAAAATTCAGATTTTATGCATTTTCCGAAAATAATAAAACTACAGAATTTCTATGAAATTATAAAACTTTAAAGGTGGTGGGACATGAAAAAATAATGTTCTCGAAATTCCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGTTTGCATACATGAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCTCCACCTTTAAAAATTCAAAATTTCCTTGTTCAAGAAAACAACAACTTTCAGAAACCCTCAAAATGTTCTCTGAATATTAGGAATTTTTGGGTTCCACTTTTTCCAATTTTCAGCTAGATCACACTTA</canonical>
            <polymorphic>GTCTACTAATTAAAAATTAATTGAATTACACCTAATTTCCAGCTCTAATCATGTTCAAGTACCTTCTCGTCGTCATCCTCCTCATCGCTCTTATCGAGTTGGCCACCGCCGATTTCTCGTGCTATTTCTCGGATTCCATCTGCAAATCGATCACCTGCAGAGTGAGTTAATTAATCCTAATTATCCATGATTAATTTTAATTTAAAAATTTTCCAGAACTGCAAAGTGGCCACCTGCATCACCGGAGACTGCGTCTGCACTCTTTGCGACCTTTAAATTTTTTTTTAAAAATTCTTTTTTATTCCTTGCCATTTTTAAACATCCCCAACTCTCCTGAAAAATATGGCCTTCCAATTGAAAAAATTAAAGAAATATTGAATAAACGAATACCGAAAAATGATGTATTTTAAAGTTTCCAAGGAAAATAGATTCGTAGATTCTGAAAAATGGTCCCAGAAGCTTGGAATTGTGTTTTTCTGGATTTAACACAGTTGATTAAMGTTGTGACAATTTGTTTTGGTAGTTCTGAATTGTCCATTTTGAAAATTCAGATTTTATGCATTTTCCGAAAATAATAAAACTACAGAATTTCTATGAAATTATAAAACTTTAAAGGTGGTGGGACATGAAAAAATAATGTTCTCGAAATTCCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGTTTGCATACATGAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCTCCACCTTTAAAAATTCAAAATTTCCTTGTTCAAGAAAACAACAACTTTCAGAAACCCTCAAAATGTTCTCTGAATATTAGGAATTTTTGGGTTCCACTTTTTCCAATTTTCAGCTAGATCACACTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAACATCCCCAACTCTCCT</pcr_primer_p1>
		<pcr_primer_p2>GGAAAATGCATAAAATCTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAAACATCCCCAACTCTCCTGAAAAATATGGCCTTCCAATTGAAAAAATTAAAGAAATATTGAATAAACGAATACCGAAAAATGATGTATTTTAAAGTTTCCAAGGAAAATAGATTCGTAGATTCTGAAAAATGGTCCCAGAAGCTTGGAATTGTGTTTTTCTGGATTTAACACAGTTGATTAAAGTTGTGACAATTTGTTTTGGTAGTTCTGAATTGTCCATTTTGAAAATTCAGATTTTATGCATTTTCC</canonical_amplicon>
		<polymorphic_amplicon>TAAACATCCCCAACTCTCCTGAAAAATATGGCCTTCCAATTGAAAAAATTAAAGAAATATTGAATAAACGAATACCGAAAAATGATGTATTTTAAAGTTTCCAAGGAAAATAGATTCGTAGATTCTGAAAAATGGTCCCAGAAGCTTGGAATTGTGTTTTTCTGGATTTAACACAGTTGATTAAMGTTGTGACAATTTGTTTTGGTAGTTCTGAATTGTCCATTTTGAAAATTCAGATTTTATGCATTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10462</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>10039</contig_pos>
        <strand>+</strand>
        <context>GTAGATTYTG[A/C]AAAATGGTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAAATGATGTATTTTAAAGTTTCCAAGGAAAATAGATTCGTAGATTCTG</left_flank>
        <right_flank>AAAATGGTCCCAGAAGCTTGGAATTGTGTTTTTCTGGATTTAACACAGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCCGGATTTCACCTTGTTCTGTTCAGAATTTTTTTTCTCTTTTATTCTAATTCTGTCTACTAATTAAAAATTAATTGAATTACACCTAATTTCCAGCTCTAATCATGTTCAAGTACCTTCTCGTCGTCATCCTCCTCATCGCTCTTATCGAGTTGGCCACCGCCGATTTCTCGTGCTATTTCTCGGATTCCATCTGCAAATCGATCACCTGCAGAGTGAGTTAATTAATCCTAATTATCCATGATTAATTTTAATTTAAAAATTTTCCAGAACTGCAAAGTGGCCACCTGCATCACCGGAGACTGCGTCTGCACTCTTTGCGACCTTTAAATTTTTTTTTAAAAATTCTTTTTTATTCCTTGCCATTTTTAAACATCCCCAACTCTCCTGAAAAATATGGCCTTCCAATTGAAAAAATTAAAGAAATATTGAATAAACGAATACCGAAAAATGATGTATTTTAAAGTTTCCAAGGAAAATAGATTCGTAGATTCTGAAAAATGGTCCCAGAAGCTTGGAATTGTGTTTTTCTGGATTTAACACAGTTGATTAAAGTTGTGACAATTTGTTTTGGTAGTTCTGAATTGTCCATTTTGAAAATTCAGATTTTATGCATTTTCCGAAAATAATAAAACTACAGAATTTCTATGAAATTATAAAACTTTAAAGGTGGTGGGACATGAAAAAATAATGTTCTCGAAATTCCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGTTTGCATACATGAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCTCCACCTTTAAAAATTCAAAATTTCCTTGTTCAAGAAAACAACAACTTTCAGAAACCCTCAAAATGTTCTC</canonical>
            <polymorphic>TTTTCCGGATTTCACCTTGTTCTGTTCAGAATTTTTTTTCTCTTTTATTCTAATTCTGTCTACTAATTAAAAATTAATTGAATTACACCTAATTTCCAGCTCTAATCATGTTCAAGTACCTTCTCGTCGTCATCCTCCTCATCGCTCTTATCGAGTTGGCCACCGCCGATTTCTCGTGCTATTTCTCGGATTCCATCTGCAAATCGATCACCTGCAGAGTGAGTTAATTAATCCTAATTATCCATGATTAATTTTAATTTAAAAATTTTCCAGAACTGCAAAGTGGCCACCTGCATCACCGGAGACTGCGTCTGCACTCTTTGCGACCTTTAAATTTTTTTTTAAAAATTCTTTTTTATTCCTTGCCATTTTTAAACATCCCCAACTCTCCTGAAAAATATGGCCTTCCAATTGAAAAAATTAAAGAAATATTGAATAAACGAATACCGAAAAATGATGTATTTTAAAGTTTCCAAGGAAAATAGATTCGTAGATTCTGMAAAATGGTCCCAGAAGCTTGGAATTGTGTTTTTCTGGATTTAACACAGTTGATTAAAGTTGTGACAATTTGTTTTGGTAGTTCTGAATTGTCCATTTTGAAAATTCAGATTTTATGCATTTTCCGAAAATAATAAAACTACAGAATTTCTATGAAATTATAAAACTTTAAAGGTGGTGGGACATGAAAAAATAATGTTCTCGAAATTCCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGTTTGCATACATGAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCTCCACCTTTAAAAATTCAAAATTTCCTTGTTCAAGAAAACAACAACTTTCAGAAACCCTCAAAATGTTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>356 310 160 86 28 23 20 17</canonical_bands>
                <polymorphic_bands>396 356 160 28 23 20 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTAAACATCCCCAACTCT</pcr_primer_p1>
		<pcr_primer_p2>CAAAATGGACAATTCAGAACTAC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTAAACATCCCCAACTCTCCTGAAAAATATGGCCTTCCAATTGAAAAAATTAAAGAAATATTGAATAAACGAATACCGAAAAATGATGTATTTTAAAGTTTCCAAGGAAAATAGATTCGTAGATTCTGAAAAATGGTCCCAGAAGCTTGGAATTGTGTTTTTCTGGATTTAACACAGTTGATTAAAGTTGTGACAATTTGTTTTGGTAGTTCTGAATTGTCCATTTTG</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTAAACATCCCCAACTCTCCTGAAAAATATGGCCTTCCAATTGAAAAAATTAAAGAAATATTGAATAAACGAATACCGAAAAATGATGTATTTTAAAGTTTCCAAGGAAAATAGATTCGTAGATTCTGMAAAATGGTCCCAGAAGCTTGGAATTGTGTTTTTCTGGATTTAACACAGTTGATTAAAGTTGTGACAATTTGTTTTGGTAGTTCTGAATTGTCCATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10463</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>10036</contig_pos>
        <strand>+</strand>
        <context>TTCGTAGATT[C/T]TGMAAAATGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGAAAAATGATGTATTTTAAAGTTTCCAAGGAAAATAGATTCGTAGATT</left_flank>
        <right_flank>TGAAAAATGGTCCCAGAAGCTTGGAATTGTGTTTTTCTGGATTTAACACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATTTTCCGGATTTCACCTTGTTCTGTTCAGAATTTTTTTTCTCTTTTATTCTAATTCTGTCTACTAATTAAAAATTAATTGAATTACACCTAATTTCCAGCTCTAATCATGTTCAAGTACCTTCTCGTCGTCATCCTCCTCATCGCTCTTATCGAGTTGGCCACCGCCGATTTCTCGTGCTATTTCTCGGATTCCATCTGCAAATCGATCACCTGCAGAGTGAGTTAATTAATCCTAATTATCCATGATTAATTTTAATTTAAAAATTTTCCAGAACTGCAAAGTGGCCACCTGCATCACCGGAGACTGCGTCTGCACTCTTTGCGACCTTTAAATTTTTTTTTAAAAATTCTTTTTTATTCCTTGCCATTTTTAAACATCCCCAACTCTCCTGAAAAATATGGCCTTCCAATTGAAAAAATTAAAGAAATATTGAATAAACGAATACCGAAAAATGATGTATTTTAAAGTTTCCAAGGAAAATAGATTCGTAGATTCTGAAAAATGGTCCCAGAAGCTTGGAATTGTGTTTTTCTGGATTTAACACAGTTGATTAAAGTTGTGACAATTTGTTTTGGTAGTTCTGAATTGTCCATTTTGAAAATTCAGATTTTATGCATTTTCCGAAAATAATAAAACTACAGAATTTCTATGAAATTATAAAACTTTAAAGGTGGTGGGACATGAAAAAATAATGTTCTCGAAATTCCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGTTTGCATACATGAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCTCCACCTTTAAAAATTCAAAATTTCCTTGTTCAAGAAAACAACAACTTTCAGAAACCCTCAAAATGTT</canonical>
            <polymorphic>CAATTTTCCGGATTTCACCTTGTTCTGTTCAGAATTTTTTTTCTCTTTTATTCTAATTCTGTCTACTAATTAAAAATTAATTGAATTACACCTAATTTCCAGCTCTAATCATGTTCAAGTACCTTCTCGTCGTCATCCTCCTCATCGCTCTTATCGAGTTGGCCACCGCCGATTTCTCGTGCTATTTCTCGGATTCCATCTGCAAATCGATCACCTGCAGAGTGAGTTAATTAATCCTAATTATCCATGATTAATTTTAATTTAAAAATTTTCCAGAACTGCAAAGTGGCCACCTGCATCACCGGAGACTGCGTCTGCACTCTTTGCGACCTTTAAATTTTTTTTTAAAAATTCTTTTTTATTCCTTGCCATTTTTAAACATCCCCAACTCTCCTGAAAAATATGGCCTTCCAATTGAAAAAATTAAAGAAATATTGAATAAACGAATACCGAAAAATGATGTATTTTAAAGTTTCCAAGGAAAATAGATTCGTAGATTYTGAAAAATGGTCCCAGAAGCTTGGAATTGTGTTTTTCTGGATTTAACACAGTTGATTAAAGTTGTGACAATTTGTTTTGGTAGTTCTGAATTGTCCATTTTGAAAATTCAGATTTTATGCATTTTCCGAAAATAATAAAACTACAGAATTTCTATGAAATTATAAAACTTTAAAGGTGGTGGGACATGAAAAAATAATGTTCTCGAAATTCCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGTTTGCATACATGAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCTCCACCTTTAAAAATTCAAAATTTCCTTGTTCAAGAAAACAACAACTTTCAGAAACCCTCAAAATGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>504 296 192 8</canonical_bands>
                <polymorphic_bands>512 296 192</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>356 310 160 86 31 23 17 17</canonical_bands>
                <polymorphic_bands>396 356 160 31 23 17 17</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>504 296 192 8</canonical_bands>
                <polymorphic_bands>512 296 192</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTAAACATCCCCAACTCT</pcr_primer_p1>
		<pcr_primer_p2>CAAAATGGACAATTCAGAACTAC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTAAACATCCCCAACTCTCCTGAAAAATATGGCCTTCCAATTGAAAAAATTAAAGAAATATTGAATAAACGAATACCGAAAAATGATGTATTTTAAAGTTTCCAAGGAAAATAGATTCGTAGATTCTGAAAAATGGTCCCAGAAGCTTGGAATTGTGTTTTTCTGGATTTAACACAGTTGATTAAAGTTGTGACAATTTGTTTTGGTAGTTCTGAATTGTCCATTTTG</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTAAACATCCCCAACTCTCCTGAAAAATATGGCCTTCCAATTGAAAAAATTAAAGAAATATTGAATAAACGAATACCGAAAAATGATGTATTTTAAAGTTTCCAAGGAAAATAGATTCGTAGATTYTGAAAAATGGTCCCAGAAGCTTGGAATTGTGTTTTTCTGGATTTAACACAGTTGATTAAAGTTGTGACAATTTGTTTTGGTAGTTCTGAATTGTCCATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10464</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>9995</contig_pos>
        <strand>+</strand>
        <context>ACCGAAAAAT[A/G]ATGTATTTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCAATTGAAAAAATTAAAGAAATATTGAATAAACGAATACCGAAAAAT</left_flank>
        <right_flank>ATGTATTTTAAAGTTTCCAAGGAAAATAGATTCGTAGATTCTGAAAAATG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGGCTCAAATTTGACGGATCGGGTAGCCAAATTTCTATTCAATTTTCCGGATTTCACCTTGTTCTGTTCAGAATTTTTTTTCTCTTTTATTCTAATTCTGTCTACTAATTAAAAATTAATTGAATTACACCTAATTTCCAGCTCTAATCATGTTCAAGTACCTTCTCGTCGTCATCCTCCTCATCGCTCTTATCGAGTTGGCCACCGCCGATTTCTCGTGCTATTTCTCGGATTCCATCTGCAAATCGATCACCTGCAGAGTGAGTTAATTAATCCTAATTATCCATGATTAATTTTAATTTAAAAATTTTCCAGAACTGCAAAGTGGCCACCTGCATCACCGGAGACTGCGTCTGCACTCTTTGCGACCTTTAAATTTTTTTTTAAAAATTCTTTTTTATTCCTTGCCATTTTTAAACATCCCCAACTCTCCTGAAAAATATGGCCTTCCAATTGAAAAAATTAAAGAAATATTGAATAAACGAATACCGAAAAATGATGTATTTTAAAGTTTCCAAGGAAAATAGATTCGTAGATTCTGAAAAATGGTCCCAGAAGCTTGGAATTGTGTTTTTCTGGATTTAACACAGTTGATTAAAGTTGTGACAATTTGTTTTGGTAGTTCTGAATTGTCCATTTTGAAAATTCAGATTTTATGCATTTTCCGAAAATAATAAAACTACAGAATTTCTATGAAATTATAAAACTTTAAAGGTGGTGGGACATGAAAAAATAATGTTCTCGAAATTCCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGTTTGCATACATGAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCTCCACCTTTAAAAATTCAAAATTTCCT</canonical>
            <polymorphic>ATGGGCTCAAATTTGACGGATCGGGTAGCCAAATTTCTATTCAATTTTCCGGATTTCACCTTGTTCTGTTCAGAATTTTTTTTCTCTTTTATTCTAATTCTGTCTACTAATTAAAAATTAATTGAATTACACCTAATTTCCAGCTCTAATCATGTTCAAGTACCTTCTCGTCGTCATCCTCCTCATCGCTCTTATCGAGTTGGCCACCGCCGATTTCTCGTGCTATTTCTCGGATTCCATCTGCAAATCGATCACCTGCAGAGTGAGTTAATTAATCCTAATTATCCATGATTAATTTTAATTTAAAAATTTTCCAGAACTGCAAAGTGGCCACCTGCATCACCGGAGACTGCGTCTGCACTCTTTGCGACCTTTAAATTTTTTTTTAAAAATTCTTTTTTATTCCTTGCCATTTTTAAACATCCCCAACTCTCCTGAAAAATATGGCCTTCCAATTGAAAAAATTAAAGAAATATTGAATAAACGAATACCGAAAAATRATGTATTTTAAAGTTTCCAAGGAAAATAGATTCGTAGATTCTGAAAAATGGTCCCAGAAGCTTGGAATTGTGTTTTTCTGGATTTAACACAGTTGATTAAAGTTGTGACAATTTGTTTTGGTAGTTCTGAATTGTCCATTTTGAAAATTCAGATTTTATGCATTTTCCGAAAATAATAAAACTACAGAATTTCTATGAAATTATAAAACTTTAAAGGTGGTGGGACATGAAAAAATAATGTTCTCGAAATTCCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGTTTGCATACATGAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCTCCACCTTTAAAAATTCAAAATTTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTAAACATCCCCAACTCT</pcr_primer_p1>
		<pcr_primer_p2>CAAAATGGACAATTCAGAACTAC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTAAACATCCCCAACTCTCCTGAAAAATATGGCCTTCCAATTGAAAAAATTAAAGAAATATTGAATAAACGAATACCGAAAAATGATGTATTTTAAAGTTTCCAAGGAAAATAGATTCGTAGATTCTGAAAAATGGTCCCAGAAGCTTGGAATTGTGTTTTTCTGGATTTAACACAGTTGATTAAAGTTGTGACAATTTGTTTTGGTAGTTCTGAATTGTCCATTTTG</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTAAACATCCCCAACTCTCCTGAAAAATATGGCCTTCCAATTGAAAAAATTAAAGAAATATTGAATAAACGAATACCGAAAAATRATGTATTTTAAAGTTTCCAAGGAAAATAGATTCGTAGATTCTGAAAAATGGTCCCAGAAGCTTGGAATTGTGTTTTTCTGGATTTAACACAGTTGATTAAAGTTGTGACAATTTGTTTTGGTAGTTCTGAATTGTCCATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10465</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>9980</contig_pos>
        <strand>+</strand>
        <context>ATTGAATAAA[A/C]GAATACCGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGAAAAATATGGCCTTCCAATTGAAAAAATTAAAGAAATATTGAATAAA</left_flank>
        <right_flank>GAATACCGAAAAATGATGTATTTTAAAGTTTCCAAGGAAAATAGATTCGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAAAATGAGATACATGGGCTCAAATTTGACGGATCGGGTAGCCAAATTTCTATTCAATTTTCCGGATTTCACCTTGTTCTGTTCAGAATTTTTTTTCTCTTTTATTCTAATTCTGTCTACTAATTAAAAATTAATTGAATTACACCTAATTTCCAGCTCTAATCATGTTCAAGTACCTTCTCGTCGTCATCCTCCTCATCGCTCTTATCGAGTTGGCCACCGCCGATTTCTCGTGCTATTTCTCGGATTCCATCTGCAAATCGATCACCTGCAGAGTGAGTTAATTAATCCTAATTATCCATGATTAATTTTAATTTAAAAATTTTCCAGAACTGCAAAGTGGCCACCTGCATCACCGGAGACTGCGTCTGCACTCTTTGCGACCTTTAAATTTTTTTTTAAAAATTCTTTTTTATTCCTTGCCATTTTTAAACATCCCCAACTCTCCTGAAAAATATGGCCTTCCAATTGAAAAAATTAAAGAAATATTGAATAAACGAATACCGAAAAATGATGTATTTTAAAGTTTCCAAGGAAAATAGATTCGTAGATTCTGAAAAATGGTCCCAGAAGCTTGGAATTGTGTTTTTCTGGATTTAACACAGTTGATTAAAGTTGTGACAATTTGTTTTGGTAGTTCTGAATTGTCCATTTTGAAAATTCAGATTTTATGCATTTTCCGAAAATAATAAAACTACAGAATTTCTATGAAATTATAAAACTTTAAAGGTGGTGGGACATGAAAAAATAATGTTCTCGAAATTCCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGTTTGCATACATGAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCTCCACCTTTAAA</canonical>
            <polymorphic>CAGAAAATGAGATACATGGGCTCAAATTTGACGGATCGGGTAGCCAAATTTCTATTCAATTTTCCGGATTTCACCTTGTTCTGTTCAGAATTTTTTTTCTCTTTTATTCTAATTCTGTCTACTAATTAAAAATTAATTGAATTACACCTAATTTCCAGCTCTAATCATGTTCAAGTACCTTCTCGTCGTCATCCTCCTCATCGCTCTTATCGAGTTGGCCACCGCCGATTTCTCGTGCTATTTCTCGGATTCCATCTGCAAATCGATCACCTGCAGAGTGAGTTAATTAATCCTAATTATCCATGATTAATTTTAATTTAAAAATTTTCCAGAACTGCAAAGTGGCCACCTGCATCACCGGAGACTGCGTCTGCACTCTTTGCGACCTTTAAATTTTTTTTTAAAAATTCTTTTTTATTCCTTGCCATTTTTAAACATCCCCAACTCTCCTGAAAAATATGGCCTTCCAATTGAAAAAATTAAAGAAATATTGAATAAAMGAATACCGAAAAATGATGTATTTTAAAGTTTCCAAGGAAAATAGATTCGTAGATTCTGAAAAATGGTCCCAGAAGCTTGGAATTGTGTTTTTCTGGATTTAACACAGTTGATTAAAGTTGTGACAATTTGTTTTGGTAGTTCTGAATTGTCCATTTTGAAAATTCAGATTTTATGCATTTTCCGAAAATAATAAAACTACAGAATTTCTATGAAATTATAAAACTTTAAAGGTGGTGGGACATGAAAAAATAATGTTCTCGAAATTCCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGTTTGCATACATGAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCTCCACCTTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTAAACATCCCCAACTCT</pcr_primer_p1>
		<pcr_primer_p2>CAAAATGGACAATTCAGAACTAC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTAAACATCCCCAACTCTCCTGAAAAATATGGCCTTCCAATTGAAAAAATTAAAGAAATATTGAATAAACGAATACCGAAAAATGATGTATTTTAAAGTTTCCAAGGAAAATAGATTCGTAGATTCTGAAAAATGGTCCCAGAAGCTTGGAATTGTGTTTTTCTGGATTTAACACAGTTGATTAAAGTTGTGACAATTTGTTTTGGTAGTTCTGAATTGTCCATTTTG</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTAAACATCCCCAACTCTCCTGAAAAATATGGCCTTCCAATTGAAAAAATTAAAGAAATATTGAATAAAMGAATACCGAAAAATGATGTATTTTAAAGTTTCCAAGGAAAATAGATTCGTAGATTCTGAAAAATGGTCCCAGAAGCTTGGAATTGTGTTTTTCTGGATTTAACACAGTTGATTAAAGTTGTGACAATTTGTTTTGGTAGTTCTGAATTGTCCATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10470</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>15866</contig_pos>
        <strand>+</strand>
        <context>AAACAAAGCW[C/T]AAAAAGTCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGATTAGCTTCAAGAAAAAAGAAAGGTGTGAAACAATAGAAACAAAGCT</left_flank>
        <right_flank>AAAAAGTCGAAAAAAAATGTGAAAAAAAATATTTTCTCCACTAGGAGCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACAATCTGAGTGGCGTTATAGCAGAGTTTATACGGTAGATTTATTAATTTTTTTTTTCAAGTTTTTGATTTTAAAATCTACAATTTGTCAGTTTTGGATTCTCAAAAAAAAAGCAAAAAAATCTGAACAAATTTCAAAAAGAATCGAAATTCCAGCTCCTAGGAGCCCTTCCTTCTAGGAGCCGAGTTACAGCCTCTCGAAGTTTTGGAGAGACGCAGACAGTTAGAGTGTCTCGTCGTCTGCGCCTCTAGCCTCCGAAACTTCAAATGGCTGTTTCTCGGCTTCTATAACAGCTAGAAAAAAGAAAATTGAATGAAAATAATGAAAAATGTTTTGAAACAAAAAGAAACTTAGCTCATTTTTCTAGGATATGACCTTTTTTGGAATTGGAAAATGTTTTTAGAAATTTTTAGGTCCTTCACATTTCCTGGACCTGCCCAAAAAAGGTGGATTAGCTTCAAGAAAAAAGAAAGGTGTGAAACAATAGAAACAAAGCTTAAAAAGTCGAAAAAAAATGTGAAAAAAAATATTTTCTCCACTAGGAGCCAAAAATCTCATAACGCACATTTCCTCTGTCATTTTCCACTAGAAATGGGACGGGATTTCCTCTCCGGATTTCCGATTTTTATGAGTGTGTGGGAAGGTCATAAATTTTGTTGTTTTGGTTTTTAGCGAAGAAAAAACAAAGTAATTATTTCCATAAAACTACCGTATACCTGAGCATCGAGAAGAAGTAATTTGCTCCGAAATCGGGTAATCGTTCGGCGCGTGATCGAAAAACTCCGGTCGTCGGTTCGGCGGTGGGCGCGGTTCAGAGACTTCTGGAAGTAATTAGGGGTAATTAGGGTAATTAAGGTTGAAGGAGGGGGAGATTTTCAGGGCTTTTGGAGAGTATGCATTCTCACGGGTTTTCAAGTTTCCGATCAATTGAACATTTTTGAGGGATTAAAACTGACATAGATTGAAAATTTCGTGGTTTTTTGGATTTTTCAAGCAGA</canonical>
            <polymorphic>TAACAATCTGAGTGGCGTTATAGCAGAGTTTATACGGTAGATTTATTAATTTTTTTTTTCAAGTTTTTGATTTTAAAATCTACAATTTGTCAGTTTTGGATTCTCAAAAAAAAAGCAAAAAAATCTGAACAAATTTCAAAAAGAATCGAAATTCCAGCTCCTAGGAGCCCTTCCTTCTAGGAGCCGAGTTACAGCCTCTCGAAGTTTTGGAGAGACGCAGACAGTTAGAGTGTCTCGTCGTCTGCGCCTCTAGCCTCCGAAACTTCAAATGGCTGTTTCTCGGCTTCTATAACAGCTAGAAAAAAGAAAATTGAATGAAAATAATGAAAAATGTTTTGAAACAAAAAGAAACTTAGCTCATTTTTCTAGGATATGACCTTTTTTGGAATTGGAAAATGTTTTTAGAAATTTTTAGGTCCTTCACATTTCCTGGACCTGCCCAAAAAAGGTGGATTAGCTTCAAGAAAAAAGAAAGGTGTGAAACAATAGAAACAAAGCTYAAAAAGTCGAAAAAAAATGTGAAAAAAAATATTTTCTCCACTAGGAGCCAAAAATCTCATAACGCACATTTCCTCTGTCATTTTCCACTAGAAATGGGACGGGATTTCCTCTCCGGATTTCCGATTTTTATGAGTGTGTGGGAAGGTCATAAATTTTGTTGTTTTGGTTTTTAGCGAAGAAAAAACAAAGTAATTATTTCCATAAAACTACCGTATACCTGAGCATCGAGAAGAAGTAATTTGCTCCGAAATCGGGTAATCGTTCGGCGCGTGATCGAAAAACTCCGGTCGTCGGTTCGGCGGTGGGCGCGGTTCAGAGACTTCTGGAAGTAATTAGGGGTAATTAGGGTAATTAAGGTTGAAGGAGGGGGAGATTTTCAGGGCTTTTGGAGAGTATGCATTCTCACGGGTTTTCAAGTTTCCGATCAATTGAACATTTTTGAGGGATTAAAACTGACATAGATTGAAAATTTCGTGGTTTTTTGGATTTTTCAAGCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>426 354 95 52 46 27</canonical_bands>
                <polymorphic_bands>780 95 52 46 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAACTTAGCTCATTTTTCTAGG</pcr_primer_p1>
		<pcr_primer_p2>CATTTCTAGTGGAAAATGACAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAACTTAGCTCATTTTTCTAGGATATGACCTTTTTTGGAATTGGAAAATGTTTTTAGAAATTTTTAGGTCCTTCACATTTCCTGGACCTGCCCAAAAAAGGTGGATTAGCTTCAAGAAAAAAGAAAGGTGTGAAACAATAGAAACAAAGCTTAAAAAGTCGAAAAAAAATGTGAAAAAAAATATTTTCTCCACTAGGAGCCAAAAATCTCATAACGCACATTTCCTCTGTCATTTTCCACTAGAAATG</canonical_amplicon>
		<polymorphic_amplicon>AGAAACTTAGCTCATTTTTCTAGGATATGACCTTTTTTGGAATTGGAAAATGTTTTTAGAAATTTTTAGGTCCTTCACATTTCCTGGACCTGCCCAAAAAAGGTGGATTAGCTTCAAGAAAAAAGAAAGGTGTGAAACAATAGAAACAAAGCTYAAAAAGTCGAAAAAAAATGTGAAAAAAAATATTTTCTCCACTAGGAGCCAAAAATCTCATAACGCACATTTCCTCTGTCATTTTCCACTAGAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10471</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>15865</contig_pos>
        <strand>+</strand>
        <context>GAAACAAAGC[A/T]YAAAAAGTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGGATTAGCTTCAAGAAAAAAGAAAGGTGTGAAACAATAGAAACAAAGC</left_flank>
        <right_flank>TAAAAAGTCGAAAAAAAATGTGAAAAAAAATATTTTCTCCACTAGGAGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAACAATCTGAGTGGCGTTATAGCAGAGTTTATACGGTAGATTTATTAATTTTTTTTTTCAAGTTTTTGATTTTAAAATCTACAATTTGTCAGTTTTGGATTCTCAAAAAAAAAGCAAAAAAATCTGAACAAATTTCAAAAAGAATCGAAATTCCAGCTCCTAGGAGCCCTTCCTTCTAGGAGCCGAGTTACAGCCTCTCGAAGTTTTGGAGAGACGCAGACAGTTAGAGTGTCTCGTCGTCTGCGCCTCTAGCCTCCGAAACTTCAAATGGCTGTTTCTCGGCTTCTATAACAGCTAGAAAAAAGAAAATTGAATGAAAATAATGAAAAATGTTTTGAAACAAAAAGAAACTTAGCTCATTTTTCTAGGATATGACCTTTTTTGGAATTGGAAAATGTTTTTAGAAATTTTTAGGTCCTTCACATTTCCTGGACCTGCCCAAAAAAGGTGGATTAGCTTCAAGAAAAAAGAAAGGTGTGAAACAATAGAAACAAAGCTTAAAAAGTCGAAAAAAAATGTGAAAAAAAATATTTTCTCCACTAGGAGCCAAAAATCTCATAACGCACATTTCCTCTGTCATTTTCCACTAGAAATGGGACGGGATTTCCTCTCCGGATTTCCGATTTTTATGAGTGTGTGGGAAGGTCATAAATTTTGTTGTTTTGGTTTTTAGCGAAGAAAAAACAAAGTAATTATTTCCATAAAACTACCGTATACCTGAGCATCGAGAAGAAGTAATTTGCTCCGAAATCGGGTAATCGTTCGGCGCGTGATCGAAAAACTCCGGTCGTCGGTTCGGCGGTGGGCGCGGTTCAGAGACTTCTGGAAGTAATTAGGGGTAATTAGGGTAATTAAGGTTGAAGGAGGGGGAGATTTTCAGGGCTTTTGGAGAGTATGCATTCTCACGGGTTTTCAAGTTTCCGATCAATTGAACATTTTTGAGGGATTAAAACTGACATAGATTGAAAATTTCGTGGTTTTTTGGATTTTTCAAGCAG</canonical>
            <polymorphic>TTAACAATCTGAGTGGCGTTATAGCAGAGTTTATACGGTAGATTTATTAATTTTTTTTTTCAAGTTTTTGATTTTAAAATCTACAATTTGTCAGTTTTGGATTCTCAAAAAAAAAGCAAAAAAATCTGAACAAATTTCAAAAAGAATCGAAATTCCAGCTCCTAGGAGCCCTTCCTTCTAGGAGCCGAGTTACAGCCTCTCGAAGTTTTGGAGAGACGCAGACAGTTAGAGTGTCTCGTCGTCTGCGCCTCTAGCCTCCGAAACTTCAAATGGCTGTTTCTCGGCTTCTATAACAGCTAGAAAAAAGAAAATTGAATGAAAATAATGAAAAATGTTTTGAAACAAAAAGAAACTTAGCTCATTTTTCTAGGATATGACCTTTTTTGGAATTGGAAAATGTTTTTAGAAATTTTTAGGTCCTTCACATTTCCTGGACCTGCCCAAAAAAGGTGGATTAGCTTCAAGAAAAAAGAAAGGTGTGAAACAATAGAAACAAAGCWTAAAAAGTCGAAAAAAAATGTGAAAAAAAATATTTTCTCCACTAGGAGCCAAAAATCTCATAACGCACATTTCCTCTGTCATTTTCCACTAGAAATGGGACGGGATTTCCTCTCCGGATTTCCGATTTTTATGAGTGTGTGGGAAGGTCATAAATTTTGTTGTTTTGGTTTTTAGCGAAGAAAAAACAAAGTAATTATTTCCATAAAACTACCGTATACCTGAGCATCGAGAAGAAGTAATTTGCTCCGAAATCGGGTAATCGTTCGGCGCGTGATCGAAAAACTCCGGTCGTCGGTTCGGCGGTGGGCGCGGTTCAGAGACTTCTGGAAGTAATTAGGGGTAATTAGGGTAATTAAGGTTGAAGGAGGGGGAGATTTTCAGGGCTTTTGGAGAGTATGCATTCTCACGGGTTTTCAAGTTTCCGATCAATTGAACATTTTTGAGGGATTAAAACTGACATAGATTGAAAATTTCGTGGTTTTTTGGATTTTTCAAGCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>502 158 138 101 61 40</canonical_bands>
                <polymorphic_bands>542 158 138 101 61</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>336 158 116 101 61 59 50 40 19 16 12 11 11 10</canonical_bands>
                <polymorphic_bands>336 158 116 101 90 61 59 19 16 12 11 11 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>426 354 95 51 46 27 1</canonical_bands>
                <polymorphic_bands>780 95 51 46 27 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAACTTAGCTCATTTTTCTAGG</pcr_primer_p1>
		<pcr_primer_p2>CATTTCTAGTGGAAAATGACAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAACTTAGCTCATTTTTCTAGGATATGACCTTTTTTGGAATTGGAAAATGTTTTTAGAAATTTTTAGGTCCTTCACATTTCCTGGACCTGCCCAAAAAAGGTGGATTAGCTTCAAGAAAAAAGAAAGGTGTGAAACAATAGAAACAAAGCTTAAAAAGTCGAAAAAAAATGTGAAAAAAAATATTTTCTCCACTAGGAGCCAAAAATCTCATAACGCACATTTCCTCTGTCATTTTCCACTAGAAATG</canonical_amplicon>
		<polymorphic_amplicon>AGAAACTTAGCTCATTTTTCTAGGATATGACCTTTTTTGGAATTGGAAAATGTTTTTAGAAATTTTTAGGTCCTTCACATTTCCTGGACCTGCCCAAAAAAGGTGGATTAGCTTCAAGAAAAAAGAAAGGTGTGAAACAATAGAAACAAAGCWTAAAAAGTCGAAAAAAAATGTGAAAAAAAATATTTTCTCCACTAGGAGCCAAAAATCTCATAACGCACATTTCCTCTGTCATTTTCCACTAGAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10493</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>38309</contig_pos>
        <strand></strand>
        <context>tctggaagga[A/T]ctggaagggc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTAGAAATGTCTTGAAAGATAGAGTATGGTCTAGAAAGATCTGGAAGGA</left_flank>
        <right_flank>CTGGAAGGGCCCAGAAGGACTTAGTAGGATCCAGAAGGACCGAGAAGGAT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACCACCAGCGACTCTTCGGATCCTTGAATTCCAAGTACATAGTGAACACAAATGACATACTGTCCCTTCTGTCCTTTAGTGGTATGTGTGATGGTTGTGGCTTCCGTCTGGACCCAGGCCAAAGTGTCGTTTGCAGCTATCAGCCGATAGTATGGAGTACGGTTGTGTCCCTTGGCGAAAAGCTCCTTCATGGCTTTTGACACGATTTCCATGTCTCCCGGATGCACTAGGTCGTAGAACGAGGTTCCCATGAGAGATTTCAGCTCGCTTTTCAGAATGTAGTTGAATTTGTCGGAGACAAATGTGATTCGCATGTCGCAGGTGTGACGGGTGGTGAAGGCGCCCATCGGGGATTCGGTGTACTAAAGAAAGAATTTGTAGGGTCTAGAAGATATTGGAATGGCCCAGAAAAATATATGTAAGAGAATCTAGTAGGGTCTAAAAGGATCTAGAAATGTCTTGAAAGATAGAGTATGGTCTAGAAAGATCTGGAAGGAACTGGAAGGGCCCAGAAGGACTTAGTAGGATCCAGAAGGACCGAGAAGGATCTAGAAGGATCTAGTAGGATCTAAAAGGGTTTAGAAGAATCTGGAAGGGTCCAGAACAATCTAAAAGAACCCTGAATGATCTAGAAGGGCCTAGAAGGATTTAGTAGAGTCTAGAAAGATCTAGTAGGGTTCAGAAGAATCTAGTAGGGTCTTGTATGGTCTAGAAGGATCAAAAGAATCTACAAGGGTTTTTTTGGGATTTTGCAGTACTGTATTGGTTTCTTGGTCCCCGGTCCCCATCCCTTCGTGGTACCTAAGGATTCCTAAGAATTCCTAAAGATTCGAATCTTGGTGTGCTTTCAACCCCTTGCTTCTCTTTTCTTCAAATTTCCTCTATTTCATCCAATTTCTTCTTGCACTGACAACGAAGAAGAAGCAGAAGACGTCCCATCTTCTTCTACGTCTTCTGTGCTTCTTCACAAAAAAGGGAGAATGACGCCAAGTTGCATG</canonical>
            <polymorphic>ACACCACCAGCGACTCTTCGGATCCTTGAATTCCAAGTACATAGTGAACACAAATGACATACTGTCCCTTCTGTCCTTTAGTGGTATGTGTGATGGTTGTGGCTTCCGTCTGGACCCAGGCCAAAGTGTCGTTTGCAGCTATCAGCCGATAGTATGGAGTACGGTTGTGTCCCTTGGCGAAAAGCTCCTTCATGGCTTTTGACACGATTTCCATGTCTCCCGGATGCACTAGGTCGTAGAACGAGGTTCCCATGAGAGATTTCAGCTCGCTTTTCAGAATGTAGTTGAATTTGTCGGAGACAAATGTGATTCGCATGTCGCAGGTGTGACGGGTGGTGAAGGCGCCCATCGGGGATTCGGTGTACTAAAGAAAGAATTTGTAGGGTCTAGAAGATATTGGAATGGCCCAGAAAAATATATGTAAGAGAATCTAGTAGGGTCTAAAAGGATCTAGAAATGTCTTGAAAGATAGAGTATGGTCTAGAAAGATCTGGAAGGAWCTGGAAGGGCCCAGAAGGACTTAGTAGGATCCAGAAGGACCGAGAAGGATCTAGAAGGATCTAGTAGGATCTAAAAGGGTTTAGAAGAATCTGGAAGGGTCCAGAACAATCTAAAAGAACCCTGAATGATCTAGAAGGGCCTAGAAGGATTTAGTAGAGTCTAGAAAGATCTAGTAGGGTTCAGAAGAATCTAGTAGGGTCTTGTATGGTCTAGAAGGATCAAAAGAATCTACAAGGGTTTTTTTGGGATTTTGCAGTACTGTATTGGTTTCTTGGTCCCCGGTCCCCATCCCTTCGTGGTACCTAAGGATTCCTAAGAATTCCTAAAGATTCGAATCTTGGTGTGCTTTCAACCCCTTGCTTCTCTTTTCTTCAAATTTCCTCTATTTCATCCAATTTCTTCTTGCACTGACAACGAAGAAGAAGCAGAAGACGTCCCATCTTCTTCTACGTCTTCTGTGCTTCTTCACAAAAAAGGGAGAATGACGCCAAGTTGCATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTGTACTAAAGAAAGAATTTG</pcr_primer_p1>
		<pcr_primer_p2>GTACTGCAAAATCCCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>403</pcr_amplicon_size>
		<canonical_amplicon>CGGTGTACTAAAGAAAGAATTTGTAGGGTCTAGAAGATATTGGAATGGCCCAGAAAAATATATGTAAGAGAATCTAGTAGGGTCTAAAAGGATCTAGAAATGTCTTGAAAGATAGAGTATGGTCTAGAAAGATCTGGAAGGAACTGGAAGGGCCCAGAAGGACTTAGTAGGATCCAGAAGGACCGAGAAGGATCTAGAAGGATCTAGTAGGATCTAAAAGGGTTTAGAAGAATCTGGAAGGGTCCAGAACAATCTAAAAGAACCCTGAATGATCTAGAAGGGCCTAGAAGGATTTAGTAGAGTCTAGAAAGATCTAGTAGGGTTCAGAAGAATCTAGTAGGGTCTTGTATGGTCTAGAAGGATCAAAAGAATCTACAAGGGTTTTTTTGGGATTTTGCAGTAC</canonical_amplicon>
		<polymorphic_amplicon>CGGTGTACTAAAGAAAGAATTTGTAGGGTCTAGAAGATATTGGAATGGCCCAGAAAAATATATGTAAGAGAATCTAGTAGGGTCTAAAAGGATCTAGAAATGTCTTGAAAGATAGAGTATGGTCTAGAAAGATCTGGAAGGAWCTGGAAGGGCCCAGAAGGACTTAGTAGGATCCAGAAGGACCGAGAAGGATCTAGAAGGATCTAGTAGGATCTAAAAGGGTTTAGAAGAATCTGGAAGGGTCCAGAACAATCTAAAAGAACCCTGAATGATCTAGAAGGGCCTAGAAGGATTTAGTAGAGTCTAGAAAGATCTAGTAGGGTTCAGAAGAATCTAGTAGGGTCTTGTATGGTCTAGAAGGATCAAAAGAATCTACAAGGGTTTTTTTGGGATTTTGCAGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10494</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>39439</contig_pos>
        <strand>+</strand>
        <context>CACTCTCTGT[A/G]ACATACAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTTCTAGGCTTACCTGTGTTAATCCCAAATACAACGCGACACTCTCTGT</left_flank>
        <right_flank>ACATACAAAATCGACGAATCGCTATCCACAATCAGGACGAATCCATCTAA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATCGAAAGATCAGAAGAAGAAAGTGTAACGTCTCCCTCAGGCCTAGACAAGAAATGATAAAGGATATCCCCCCGATCAAAAGATCAACTATCAAGCTCACCTTTGTCATCGCAGATGCATTGGCATTTGTGGTGCCCTGTCCAGCAGGTATAGTGATGCCTTGCATAAATGACACGTGTCCCCCGGTTGAAACTTTTGAGTGCACCAAGAACGAGACGGATTTGTACAAGGCGCTCTTCAGGTTCAGACACCGACCACGTGGGCTGATCACTGTCTTCATTCGGAGCACAATGTTGACTCCGTTTGGATCGGATTCCTCGTCTTTCGGCTTGTGCAGAAGTTTGGTCTGTTTATCGAACTCATCGTAGTCGGCTGGATGTAAAAAGTCGCGAAGAGCACGGCCAGTGAGGTCAGTCTGAAAGTTCAGTAAGTGTTGAAACTTCAAAAACCTTCTAGGCTTACCTGTGTTAATCCCAAATACAACGCGACACTCTCTGTGACATACAAAATCGACGAATCGCTATCCACAATCAGGACGAATCCATCTAAACACTCTGCTATCGTCTCCTCATTCCACACTTCATTGTTGAACTCGTTGTCCAGGTCGTTTTCGAGAACTGGAAATCCTTGTTTTCGTGCTTGTATATATTCTTTTAGAATCAATATTTTTGAACCAACTAAATTAGATGGCATAAAACTAAACGAGTGCTACAAAATGATATTATTTGGAATGCTATATCTTGTCTATGAACAAAGTTTCAAGGCTTTATAGCTAGGACCCCAAAGCTCCGACGGTTTTTGATTTTTAACTTTGTTCATAGACAAGATACAGTATTCCAAATAGTATGATTTTGTAGATCTTGAATTTTTCTATCATGTTTATTTATTCAGTTCAAAAACTTTGATTCTAAAATAAACTATGCGGGCCCCAACTGTTAATCTTAATTTGAGAAAAAAATCTGATCTCTGATCATACCCCCCAACTAATTCCTTTCTAAT</canonical>
            <polymorphic>GATCGAAAGATCAGAAGAAGAAAGTGTAACGTCTCCCTCAGGCCTAGACAAGAAATGATAAAGGATATCCCCCCGATCAAAAGATCAACTATCAAGCTCACCTTTGTCATCGCAGATGCATTGGCATTTGTGGTGCCCTGTCCAGCAGGTATAGTGATGCCTTGCATAAATGACACGTGTCCCCCGGTTGAAACTTTTGAGTGCACCAAGAACGAGACGGATTTGTACAAGGCGCTCTTCAGGTTCAGACACCGACCACGTGGGCTGATCACTGTCTTCATTCGGAGCACAATGTTGACTCCGTTTGGATCGGATTCCTCGTCTTTCGGCTTGTGCAGAAGTTTGGTCTGTTTATCGAACTCATCGTAGTCGGCTGGATGTAAAAAGTCGCGAAGAGCACGGCCAGTGAGGTCAGTCTGAAAGTTCAGTAAGTGTTGAAACTTCAAAAACCTTCTAGGCTTACCTGTGTTAATCCCAAATACAACGCGACACTCTCTGTRACATACAAAATCGACGAATCGCTATCCACAATCAGGACGAATCCATCTAAACACTCTGCTATCGTCTCCTCATTCCACACTTCATTGTTGAACTCGTTGTCCAGGTCGTTTTCGAGAACTGGAAATCCTTGTTTTCGTGCTTGTATATATTCTTTTAGAATCAATATTTTTGAACCAACTAAATTAGATGGCATAAAACTAAACGAGTGCTACAAAATGATATTATTTGGAATGCTATATCTTGTCTATGAACAAAGTTTCAAGGCTTTATAGCTAGGACCCCAAAGCTCCGACGGTTTTTGATTTTTAACTTTGTTCATAGACAAGATACAGTATTCCAAATAGTATGATTTTGTAGATCTTGAATTTTTCTATCATGTTTATTTATTCAGTTCAAAAACTTTGATTCTAAAATAAACTATGCGGGCCCCAACTGTTAATCTTAATTTGAGAAAAAAATCTGATCTCTGATCATACCCCCCAACTAATTCCTTTCTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>291 74 70 64 60 46 46 34 32 28 26 26 25 24 24 23 21 19 18 9 9 9 7 4 4 3 2 2</canonical_bands>
                <polymorphic_bands>291 74 70 64 60 46 46 37 34 32 26 26 25 24 24 23 21 19 18 9 9 7 4 4 3 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTTTATCGAACTCATCGTAGT</pcr_primer_p1>
		<pcr_primer_p2>AACGAGTTCAACAATGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTGTTTATCGAACTCATCGTAGTCGGCTGGATGTAAAAAGTCGCGAAGAGCACGGCCAGTGAGGTCAGTCTGAAAGTTCAGTAAGTGTTGAAACTTCAAAAACCTTCTAGGCTTACCTGTGTTAATCCCAAATACAACGCGACACTCTCTGTGACATACAAAATCGACGAATCGCTATCCACAATCAGGACGAATCCATCTAAACACTCTGCTATCGTCTCCTCATTCCACACTTCATTGTTGAACTCGTT</canonical_amplicon>
		<polymorphic_amplicon>CTGTTTATCGAACTCATCGTAGTCGGCTGGATGTAAAAAGTCGCGAAGAGCACGGCCAGTGAGGTCAGTCTGAAAGTTCAGTAAGTGTTGAAACTTCAAAAACCTTCTAGGCTTACCTGTGTTAATCCCAAATACAACGCGACACTCTCTGTRACATACAAAATCGACGAATCGCTATCCACAATCAGGACGAATCCATCTAAACACTCTGCTATCGTCTCCTCATTCCACACTTCATTGTTGAACTCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10502</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>67090</contig_pos>
        <strand>+</strand>
        <context>GGAAAAACTA[G/T]AATTTCAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTGTTTAGCATGAAAATTTTCAAGAAATTTGAAGATTTTGGAAAAACTA</left_flank>
        <right_flank>AATTTCAATTTAATTTGAAAAACAAAAGGCGCTAAAAATCCAGAAAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGTCCGCATCCTCATCCACAAATCAAAACGGGTTAATGGGCTTTTTTTGAAGTAGAAGTTTCCGAGAGGTGAGGAAGAGAAAGATGGGGCCACATGAGGTGAGACGTTGAGTTGGAAATGAGGTGTGACAGAAGAGCTATTGGGTAGTGGAAAGCGTTTAAAGAAGAAGAAGAAGAACAGTGGAAAGGAGAATTTATGAGTTTCGACGAATGGCTGAGAGGGTCAGTGGTTTTTCTTGGAAGTTGGGTAGGAAAAAGTGGGGAAGTTTGACCGTTTCCCACTAGTTTCATTAAAAAATGGTAAAAATTGGCTTTGAAAGTATTTAATTTCCAGTGCTAAAAATGAGCGGAAACGCTGAAAAAAGCTGAAAATATTCAGAAGACTCATATTAAAGAGAACATCCAATTTCAGCCATTTTCAGCTTAAAAATTATAGATAAAAAAACTCTTTGTTTAGCATGAAAATTTTCAAGAAATTTGAAGATTTTGGAAAAACTAGAATTTCAATTTAATTTGAAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAA</canonical>
            <polymorphic>AGAGTCCGCATCCTCATCCACAAATCAAAACGGGTTAATGGGCTTTTTTTGAAGTAGAAGTTTCCGAGAGGTGAGGAAGAGAAAGATGGGGCCACATGAGGTGAGACGTTGAGTTGGAAATGAGGTGTGACAGAAGAGCTATTGGGTAGTGGAAAGCGTTTAAAGAAGAAGAAGAAGAACAGTGGAAAGGAGAATTTATGAGTTTCGACGAATGGCTGAGAGGGTCAGTGGTTTTTCTTGGAAGTTGGGTAGGAAAAAGTGGGGAAGTTTGACCGTTTCCCACTAGTTTCATTAAAAAATGGTAAAAATTGGCTTTGAAAGTATTTAATTTCCAGTGCTAAAAATGAGCGGAAACGCTGAAAAAAGCTGAAAATATTCAGAAGACTCATATTAAAGAGAACATCCAATTTCAGCCATTTTCAGCTTAAAAATTATAGATAAAAAAACTCTTTGTTTAGCATGAAAATTTTCAAGAAATTTGAAGATTTTGGAAAAACTAKAATTTCAATTTAATTTGAAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>316 272 192 128 40 25 16 11</canonical_bands>
                <polymorphic_bands>316 272 192 153 40 16 11</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>445 283 214 58</canonical_bands>
                <polymorphic_bands>659 283 58</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACTCTTTGTTTAGCATGAAA</pcr_primer_p1>
		<pcr_primer_p2>TATCATAGAAGCCATCCCTATAC</pcr_primer_p2>
		<pcr_amplicon_size>325</pcr_amplicon_size>
		<canonical_amplicon>AAAACTCTTTGTTTAGCATGAAAATTTTCAAGAAATTTGAAGATTTTGGAAAAACTAGAATTTCAATTTAATTTGAAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATA</canonical_amplicon>
		<polymorphic_amplicon>AAAACTCTTTGTTTAGCATGAAAATTTTCAAGAAATTTGAAGATTTTGGAAAAACTAKAATTTCAATTTAATTTGAAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10503</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>67143</contig_pos>
        <strand></strand>
        <context>GAAAAAAAGA[T/A]AAGCACCtaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTCAATTTAATTTGAAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGA</left_flank>
        <right_flank>AAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAGAAGTTTCCGAGAGGTGAGGAAGAGAAAGATGGGGCCACATGAGGTGAGACGTTGAGTTGGAAATGAGGTGTGACAGAAGAGCTATTGGGTAGTGGAAAGCGTTTAAAGAAGAAGAAGAAGAACAGTGGAAAGGAGAATTTATGAGTTTCGACGAATGGCTGAGAGGGTCAGTGGTTTTTCTTGGAAGTTGGGTAGGAAAAAGTGGGGAAGTTTGACCGTTTCCCACTAGTTTCATTAAAAAATGGTAAAAATTGGCTTTGAAAGTATTTAATTTCCAGTGCTAAAAATGAGCGGAAACGCTGAAAAAAGCTGAAAATATTCAGAAGACTCATATTAAAGAGAACATCCAATTTCAGCCATTTTCAGCTTAAAAATTATAGATAAAAAAACTCTTTGTTTAGCATGAAAATTTTCAAGAAATTTGAAGATTTTGGAAAAACTAGAATTTCAATTTAATTTGAAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTC</canonical>
            <polymorphic>GTAGAAGTTTCCGAGAGGTGAGGAAGAGAAAGATGGGGCCACATGAGGTGAGACGTTGAGTTGGAAATGAGGTGTGACAGAAGAGCTATTGGGTAGTGGAAAGCGTTTAAAGAAGAAGAAGAAGAACAGTGGAAAGGAGAATTTATGAGTTTCGACGAATGGCTGAGAGGGTCAGTGGTTTTTCTTGGAAGTTGGGTAGGAAAAAGTGGGGAAGTTTGACCGTTTCCCACTAGTTTCATTAAAAAATGGTAAAAATTGGCTTTGAAAGTATTTAATTTCCAGTGCTAAAAATGAGCGGAAACGCTGAAAAAAGCTGAAAATATTCAGAAGACTCATATTAAAGAGAACATCCAATTTCAGCCATTTTCAGCTTAAAAATTATAGATAAAAAAACTCTTTGTTTAGCATGAAAATTTTCAAGAAATTTGAAGATTTTGGAAAAACTAGAATTTCAATTTAATTTGAAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGAWAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTCTTTGTTTAGCATGAAA</pcr_primer_p1>
		<pcr_primer_p2>TATCATAGAAGCCATCCCTATAC</pcr_primer_p2>
		<pcr_amplicon_size>325</pcr_amplicon_size>
		<canonical_amplicon>AAAACTCTTTGTTTAGCATGAAAATTTTCAAGAAATTTGAAGATTTTGGAAAAACTAGAATTTCAATTTAATTTGAAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATA</canonical_amplicon>
		<polymorphic_amplicon>AAAACTCTTTGTTTAGCATGAAAATTTTCAAGAAATTTGAAGATTTTGGAAAAACTAGAATTTCAATTTAATTTGAAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGAWAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10504</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>67361</contig_pos>
        <strand>+</strand>
        <context>TATGATAGAG[G/T]GTAACTCWag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAG</left_flank>
        <right_flank>GTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCGTTTCCCACTAGTTTCATTAAAAAATGGTAAAAATTGGCTTTGAAAGTATTTAATTTCCAGTGCTAAAAATGAGCGGAAACGCTGAAAAAAGCTGAAAATATTCAGAAGACTCATATTAAAGAGAACATCCAATTTCAGCCATTTTCAGCTTAAAAATTATAGATAAAAAAACTCTTTGTTTAGCATGAAAATTTTCAAGAAATTTGAAGATTTTGGAAAAACTAGAATTTCAATTTAATTTGAAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCTGTCACGTTTTTCTAACCCATTTCTCATGACTCTCCCAAAAAAAGACAAAAAGAGGGTAAGACCCTCCGGTGGGGTCGATTTGGAAGATTAAGGGGGGACTCAATTTGCACCCCCTCCAAAATTGAATGATCGTTGCTTACGTCGGAAGAGAAGCAGGATAATTTAAATATCCCAAATTTTTGTGGTGAGGTTTGGTCCCCTTCCGGCTTTGCTC</canonical>
            <polymorphic>ACCGTTTCCCACTAGTTTCATTAAAAAATGGTAAAAATTGGCTTTGAAAGTATTTAATTTCCAGTGCTAAAAATGAGCGGAAACGCTGAAAAAAGCTGAAAATATTCAGAAGACTCATATTAAAGAGAACATCCAATTTCAGCCATTTTCAGCTTAAAAATTATAGATAAAAAAACTCTTTGTTTAGCATGAAAATTTTCAAGAAATTTGAAGATTTTGGAAAAACTAGAATTTCAATTTAATTTGAAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGKGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCTGTCACGTTTTTCTAACCCATTTCTCATGACTCTCCCAAAAAAAGACAAAAAGAGGGTAAGACCCTCCGGTGGGGTCGATTTGGAAGATTAAGGGGGGACTCAATTTGCACCCCCTCCAAAATTGAATGATCGTTGCTTACGTCGGAAGAGAAGCAGGATAATTTAAATATCCCAAATTTTTGTGGTGAGGTTTGGTCCCCTTCCGGCTTTGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAAAAGGCGCTAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>CATAGTTGAAAACTGGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>451</pcr_amplicon_size>
		<canonical_amplicon>AACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATG</canonical_amplicon>
		<polymorphic_amplicon>AACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGKGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10505</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>67538</contig_pos>
        <strand>+</strand>
        <context>GCTTCTAGTA[A/G]ATCATTTCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTA</left_flank>
        <right_flank>ATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTGTTTAGCATGAAAATTTTCAAGAAATTTGAAGATTTTGGAAAAACTAGAATTTCAATTTAATTTGAAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCTGTCACGTTTTTCTAACCCATTTCTCATGACTCTCCCAAAAAAAGACAAAAAGAGGGTAAGACCCTCCGGTGGGGTCGATTTGGAAGATTAAGGGGGGACTCAATTTGCACCCCCTCCAAAATTGAATGATCGTTGCTTACGTCGGAAGAGAAGCAGGATAATTTAAATATCCCAAATTTTTGTGGTGAGGTTTGGTCCCCTTCCGGCTTTGCTCGAGTCAAAAAAAAATGTTTTGAATTTATCACTTTTTGCTCACAACTAAAAAAAATCATCAATTTTTTGCCTCAATCTCCCTGGAGACTAAAAGTGGCAACATTTTGGAAAAATATGATTTTTCGATAATTTATTGTTCCCTTTGGATTCATAAAAAAGTACCTGGAACAAAGGTCGG</canonical>
            <polymorphic>CTTTGTTTAGCATGAAAATTTTCAAGAAATTTGAAGATTTTGGAAAAACTAGAATTTCAATTTAATTTGAAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTARATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCTGTCACGTTTTTCTAACCCATTTCTCATGACTCTCCCAAAAAAAGACAAAAAGAGGGTAAGACCCTCCGGTGGGGTCGATTTGGAAGATTAAGGGGGGACTCAATTTGCACCCCCTCCAAAATTGAATGATCGTTGCTTACGTCGGAAGAGAAGCAGGATAATTTAAATATCCCAAATTTTTGTGGTGAGGTTTGGTCCCCTTCCGGCTTTGCTCGAGTCAAAAAAAAATGTTTTGAATTTATCACTTTTTGCTCACAACTAAAAAAAATCATCAATTTTTTGCCTCAATCTCCCTGGAGACTAAAAGTGGCAACATTTTGGAAAAATATGATTTTTCGATAATTTATTGTTCCCTTTGGATTCATAAAAAAGTACCTGGAACAAAGGTCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>499 264 151 68 18</canonical_bands>
                <polymorphic_bands>567 264 151 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAAAAGGCGCTAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AGAGGAGATAGAACATGGAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>537</pcr_amplicon_size>
		<canonical_amplicon>AACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCT</canonical_amplicon>
		<polymorphic_amplicon>AACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTARATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10506</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>67577</contig_pos>
        <strand>+</strand>
        <context>TTTTGTATTC[A/C]CAATTTTTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTC</left_flank>
        <right_flank>CAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGAAAAACTAGAATTTCAATTTAATTTGAAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCTGTCACGTTTTTCTAACCCATTTCTCATGACTCTCCCAAAAAAAGACAAAAAGAGGGTAAGACCCTCCGGTGGGGTCGATTTGGAAGATTAAGGGGGGACTCAATTTGCACCCCCTCCAAAATTGAATGATCGTTGCTTACGTCGGAAGAGAAGCAGGATAATTTAAATATCCCAAATTTTTGTGGTGAGGTTTGGTCCCCTTCCGGCTTTGCTCGAGTCAAAAAAAAATGTTTTGAATTTATCACTTTTTGCTCACAACTAAAAAAAATCATCAATTTTTTGCCTCAATCTCCCTGGAGACTAAAAGTGGCAACATTTTGGAAAAATATGATTTTTCGATAATTTATTGTTCCCTTTGGATTCATAAAAAAGTACCTGGAACAAAGGTCGGCTGGGTCTCATTGACTTGTGTCAGCTCCTCGTCATCTGA</canonical>
            <polymorphic>TTGGAAAAACTAGAATTTCAATTTAATTTGAAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCMCAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCTGTCACGTTTTTCTAACCCATTTCTCATGACTCTCCCAAAAAAAGACAAAAAGAGGGTAAGACCCTCCGGTGGGGTCGATTTGGAAGATTAAGGGGGGACTCAATTTGCACCCCCTCCAAAATTGAATGATCGTTGCTTACGTCGGAAGAGAAGCAGGATAATTTAAATATCCCAAATTTTTGTGGTGAGGTTTGGTCCCCTTCCGGCTTTGCTCGAGTCAAAAAAAAATGTTTTGAATTTATCACTTTTTGCTCACAACTAAAAAAAATCATCAATTTTTTGCCTCAATCTCCCTGGAGACTAAAAGTGGCAACATTTTGGAAAAATATGATTTTTCGATAATTTATTGTTCCCTTTGGATTCATAAAAAAGTACCTGGAACAAAGGTCGGCTGGGTCTCATTGACTTGTGTCAGCTCCTCGTCATCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>264 102 75 74 71 69 67 66 57 54 38 26 19 11 3 2 2</canonical_bands>
                <polymorphic_bands>264 140 102 75 71 69 67 57 54 38 26 19 11 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAAAAGGCGCTAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AGAGGAGATAGAACATGGAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>537</pcr_amplicon_size>
		<canonical_amplicon>AACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCT</canonical_amplicon>
		<polymorphic_amplicon>AACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCMCAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10507</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>67606</contig_pos>
        <strand>+</strand>
        <context>GAAACTTCGA[A/G]ATCTCCCATG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGA</left_flank>
        <right_flank>ATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCTGTCACGTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCTGTCACGTTTTTCTAACCCATTTCTCATGACTCTCCCAAAAAAAGACAAAAAGAGGGTAAGACCCTCCGGTGGGGTCGATTTGGAAGATTAAGGGGGGACTCAATTTGCACCCCCTCCAAAATTGAATGATCGTTGCTTACGTCGGAAGAGAAGCAGGATAATTTAAATATCCCAAATTTTTGTGGTGAGGTTTGGTCCCCTTCCGGCTTTGCTCGAGTCAAAAAAAAATGTTTTGAATTTATCACTTTTTGCTCACAACTAAAAAAAATCATCAATTTTTTGCCTCAATCTCCCTGGAGACTAAAAGTGGCAACATTTTGGAAAAATATGATTTTTCGATAATTTATTGTTCCCTTTGGATTCATAAAAAAGTACCTGGAACAAAGGTCGGCTGGGTCTCATTGACTTGTGTCAGCTCCTCGTCATCTGAGCCATTTAGCTGAAAATTTATTGTTTGGA</canonical>
            <polymorphic>GAAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGARATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCTGTCACGTTTTTCTAACCCATTTCTCATGACTCTCCCAAAAAAAGACAAAAAGAGGGTAAGACCCTCCGGTGGGGTCGATTTGGAAGATTAAGGGGGGACTCAATTTGCACCCCCTCCAAAATTGAATGATCGTTGCTTACGTCGGAAGAGAAGCAGGATAATTTAAATATCCCAAATTTTTGTGGTGAGGTTTGGTCCCCTTCCGGCTTTGCTCGAGTCAAAAAAAAATGTTTTGAATTTATCACTTTTTGCTCACAACTAAAAAAAATCATCAATTTTTTGCCTCAATCTCCCTGGAGACTAAAAGTGGCAACATTTTGGAAAAATATGATTTTTCGATAATTTATTGTTCCCTTTGGATTCATAAAAAAGTACCTGGAACAAAGGTCGGCTGGGTCTCATTGACTTGTGTCAGCTCCTCGTCATCTGAGCCATTTAGCTGAAAATTTATTGTTTGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>431 332 151 68 18</canonical_bands>
                <polymorphic_bands>431 332 151 86</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>463 434 69 24 10</canonical_bands>
                <polymorphic_bands>463 434 79 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCATTTCCAGTTTTCAACTATG</pcr_primer_p1>
		<pcr_primer_p2>GTAAGCAACGATCATTCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCTGTCACGTTTTTCTAACCCATTTCTCATGACTCTCCCAAAAAAAGACAAAAAGAGGGTAAGACCCTCCGGTGGGGTCGATTTGGAAGATTAAGGGGGGACTCAATTTGCACCCCCTCCAAAATTGAATGATCGTTGCTTAC</canonical_amplicon>
		<polymorphic_amplicon>ATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGARATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCTGTCACGTTTTTCTAACCCATTTCTCATGACTCTCCCAAAAAAAGACAAAAAGAGGGTAAGACCCTCCGGTGGGGTCGATTTGGAAGATTAAGGGGGGACTCAATTTGCACCCCCTCCAAAATTGAATGATCGTTGCTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10508</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>67679</contig_pos>
        <strand>+</strand>
        <context>TCTCATGACT[C/T]TCCCAAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCATGTTCTATCTCCTCTGTCACGTTTTTCTAACCCATTTCTCATGACT</left_flank>
        <right_flank>TCCCAAAAAAAGACAAAAAGAGGGTAAGACCCTCCGGTGGGGTCGATTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCTGTCACGTTTTTCTAACCCATTTCTCATGACTCTCCCAAAAAAAGACAAAAAGAGGGTAAGACCCTCCGGTGGGGTCGATTTGGAAGATTAAGGGGGGACTCAATTTGCACCCCCTCCAAAATTGAATGATCGTTGCTTACGTCGGAAGAGAAGCAGGATAATTTAAATATCCCAAATTTTTGTGGTGAGGTTTGGTCCCCTTCCGGCTTTGCTCGAGTCAAAAAAAAATGTTTTGAATTTATCACTTTTTGCTCACAACTAAAAAAAATCATCAATTTTTTGCCTCAATCTCCCTGGAGACTAAAAGTGGCAACATTTTGGAAAAATATGATTTTTCGATAATTTATTGTTCCCTTTGGATTCATAAAAAAGTACCTGGAACAAAGGTCGGCTGGGTCTCATTGACTTGTGTCAGCTCCTCGTCATCTGAGCCATTTAGCTGAAAATTTATTGTTTGGAAACTTCAGGAATTTTCAGTATTATCAATCTTACATGATTCAATAACACATTTGGAGCCTCTTCACTACTATCG</canonical>
            <polymorphic>TGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCTGTCACGTTTTTCTAACCCATTTCTCATGACTYTCCCAAAAAAAGACAAAAAGAGGGTAAGACCCTCCGGTGGGGTCGATTTGGAAGATTAAGGGGGGACTCAATTTGCACCCCCTCCAAAATTGAATGATCGTTGCTTACGTCGGAAGAGAAGCAGGATAATTTAAATATCCCAAATTTTTGTGGTGAGGTTTGGTCCCCTTCCGGCTTTGCTCGAGTCAAAAAAAAATGTTTTGAATTTATCACTTTTTGCTCACAACTAAAAAAAATCATCAATTTTTTGCCTCAATCTCCCTGGAGACTAAAAGTGGCAACATTTTGGAAAAATATGATTTTTCGATAATTTATTGTTCCCTTTGGATTCATAAAAAAGTACCTGGAACAAAGGTCGGCTGGGTCTCATTGACTTGTGTCAGCTCCTCGTCATCTGAGCCATTTAGCTGAAAATTTATTGTTTGGAAACTTCAGGAATTTTCAGTATTATCAATCTTACATGATTCAATAACACATTTGGAGCCTCTTCACTACTATCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>496 144 136 118 69 37</canonical_bands>
                <polymorphic_bands>565 144 136 118 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCATTTCCAGTTTTCAACTATG</pcr_primer_p1>
		<pcr_primer_p2>GTAAGCAACGATCATTCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCTGTCACGTTTTTCTAACCCATTTCTCATGACTCTCCCAAAAAAAGACAAAAAGAGGGTAAGACCCTCCGGTGGGGTCGATTTGGAAGATTAAGGGGGGACTCAATTTGCACCCCCTCCAAAATTGAATGATCGTTGCTTAC</canonical_amplicon>
		<polymorphic_amplicon>ATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCTGTCACGTTTTTCTAACCCATTTCTCATGACTYTCCCAAAAAAAGACAAAAAGAGGGTAAGACCCTCCGGTGGGGTCGATTTGGAAGATTAAGGGGGGACTCAATTTGCACCCCCTCCAAAATTGAATGATCGTTGCTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10509</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>69916</contig_pos>
        <strand>+</strand>
        <context>GCTAAATTTK[C/T]TAAGAATTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACCGATTTGGTTCTCGTTTCCCAGAAGTCTGAAAAATTAGCTAAATTTG</left_flank>
        <right_flank>TAAGAATTACCGTAAACCATAAACTTTAAGTCCATATATCTCCGTTCATA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTACTAAATGCCTATTATTTCTATGAACAAAAATAGAATTGCTCCAATGCTCTACCTTTGCTCTTCAGGATTTATTGAAATGACCTATCTAGATTCACGAAAAAAAGTTCAGTTCCAGAACACCACTCTCTCTCTCTCTCTCTGTCCCTCCCAAATCCCAAAAAATCTAACAGCTGATCGATCATGAAAAGGTGATTAAATTTCAGACAGCTATGTCGTGTCGACAAACGAGACTCTCTAATTTTCGTGATTCAGATTTTGATGGTGCACTTTTAATGACCGCCGTCTGACGACACATGCATTGGGAAAAGGAGGAGGAGGATCAAGACACACTGTAATGACAACTCACCCAATCTCAAATTCAACTGCGCTCCGAAAAACGGCTGAGCATGTCTTGCCACTTTGCATAATTCCACAGGCTTGCTATTCCGCACCAAAATGTCAAATCCACCGATTTGGTTCTCGTTTCCCAGAAGTCTGAAAAATTAGCTAAATTTGTTAAGAATTACCGTAAACCATAAACTTTAAGTCCATATATCTCCGTTCATATAAGAGGTATCAAAAGGTAATCAACTGATAAAATATTTATGACATTATGATAAGCATTTTATTAGTTGGCTACTTCTCGATATCTTTATAGGACCCGAGATATATGGGTTTAAAGCTGACGGCATGGCTAGTCTTCTAATATATAGTAGAGGGCCTACGGTATTTGAAAACCCACTTTTTCTCAATATCCAAAACATCAATCATATGATTAAGAACTCGATACTTGAGTTCGAAATCTTCCTGAGACGATGCGGTAAGTGATGGACTGGCGTTCACCTAAAAAAAGAATCTTAAAAACCCATAAATCTCTTGCTTATCTTCACAGCTCAATGAGCACAAAAAGCCAATTGTTCGAAACGAAAAAAAAAATGTTTTTCAATTTTTGAAGTTAATGTCCAAGACAAATGGGAAATCAGATAACAACCTCTAACAGCCATGGCTTCAGATTTT</canonical>
            <polymorphic>ACTACTAAATGCCTATTATTTCTATGAACAAAAATAGAATTGCTCCAATGCTCTACCTTTGCTCTTCAGGATTTATTGAAATGACCTATCTAGATTCACGAAAAAAAGTTCAGTTCCAGAACACCACTCTCTCTCTCTCTCTCTGTCCCTCCCAAATCCCAAAAAATCTAACAGCTGATCGATCATGAAAAGGTGATTAAATTTCAGACAGCTATGTCGTGTCGACAAACGAGACTCTCTAATTTTCGTGATTCAGATTTTGATGGTGCACTTTTAATGACCGCCGTCTGACGACACATGCATTGGGAAAAGGAGGAGGAGGATCAAGACACACTGTAATGACAACTCACCCAATCTCAAATTCAACTGCGCTCCGAAAAACGGCTGAGCATGTCTTGCCACTTTGCATAATTCCACAGGCTTGCTATTCCGCACCAAAATGTCAAATCCACCGATTTGGTTCTCGTTTCCCAGAAGTCTGAAAAATTAGCTAAATTTGYTAAGAATTACCGTAAACCATAAACTTTAAGTCCATATATCTCCGTTCATATAAGAGGTATCAAAAGGTAATCAACTGATAAAATATTTATGACATTATGATAAGCATTTTATTAGTTGGCTACTTCTCGATATCTTTATAGGACCCGAGATATATGGGTTTAAAGCTGACGGCATGGCTAGTCTTCTAATATATAGTAGAGGGCCTACGGTATTTGAAAACCCACTTTTTCTCAATATCCAAAACATCAATCATATGATTAAGAACTCGATACTTGAGTTCGAAATCTTCCTGAGACGATGCGGTAAGTGATGGACTGGCGTTCACCTAAAAAAAGAATCTTAAAAACCCATAAATCTCTTGCTTATCTTCACAGCTCAATGAGCACAAAAAGCCAATTGTTCGAAACGAAAAAAAAAATGTTTTTCAATTTTTGAAGTTAATGTCCAAGACAAATGGGAAATCAGATAACAACCTCTAACAGCCATGGCTTCAGATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>226 197 134 99 98 82 77 61 26</canonical_bands>
                <polymorphic_bands>252 197 134 99 98 82 77 61</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACCAAAATGTCAAATCCAC</pcr_primer_p1>
		<pcr_primer_p2>AATACCGTAGGCCCTCTACTA</pcr_primer_p2>
		<pcr_amplicon_size>282</pcr_amplicon_size>
		<canonical_amplicon>CACCAAAATGTCAAATCCACCGATTTGGTTCTCGTTTCCCAGAAGTCTGAAAAATTAGCTAAATTTGTTAAGAATTACCGTAAACCATAAACTTTAAGTCCATATATCTCCGTTCATATAAGAGGTATCAAAAGGTAATCAACTGATAAAATATTTATGACATTATGATAAGCATTTTATTAGTTGGCTACTTCTCGATATCTTTATAGGACCCGAGATATATGGGTTTAAAGCTGACGGCATGGCTAGTCTTCTAATATATAGTAGAGGGCCTACGGTATT</canonical_amplicon>
		<polymorphic_amplicon>CACCAAAATGTCAAATCCACCGATTTGGTTCTCGTTTCCCAGAAGTCTGAAAAATTAGCTAAATTTGYTAAGAATTACCGTAAACCATAAACTTTAAGTCCATATATCTCCGTTCATATAAGAGGTATCAAAAGGTAATCAACTGATAAAATATTTATGACATTATGATAAGCATTTTATTAGTTGGCTACTTCTCGATATCTTTATAGGACCCGAGATATATGGGTTTAAAGCTGACGGCATGGCTAGTCTTCTAATATATAGTAGAGGGCCTACGGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10510</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>69915</contig_pos>
        <strand>+</strand>
        <context>AGCTAAATTT[G/T]YTAAGAATTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCACCGATTTGGTTCTCGTTTCCCAGAAGTCTGAAAAATTAGCTAAATTT</left_flank>
        <right_flank>TTAAGAATTACCGTAAACCATAAACTTTAAGTCCATATATCTCCGTTCAT</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTACTAAATGCCTATTATTTCTATGAACAAAAATAGAATTGCTCCAATGCTCTACCTTTGCTCTTCAGGATTTATTGAAATGACCTATCTAGATTCACGAAAAAAAGTTCAGTTCCAGAACACCACTCTCTCTCTCTCTCTCTGTCCCTCCCAAATCCCAAAAAATCTAACAGCTGATCGATCATGAAAAGGTGATTAAATTTCAGACAGCTATGTCGTGTCGACAAACGAGACTCTCTAATTTTCGTGATTCAGATTTTGATGGTGCACTTTTAATGACCGCCGTCTGACGACACATGCATTGGGAAAAGGAGGAGGAGGATCAAGACACACTGTAATGACAACTCACCCAATCTCAAATTCAACTGCGCTCCGAAAAACGGCTGAGCATGTCTTGCCACTTTGCATAATTCCACAGGCTTGCTATTCCGCACCAAAATGTCAAATCCACCGATTTGGTTCTCGTTTCCCAGAAGTCTGAAAAATTAGCTAAATTTGTTAAGAATTACCGTAAACCATAAACTTTAAGTCCATATATCTCCGTTCATATAAGAGGTATCAAAAGGTAATCAACTGATAAAATATTTATGACATTATGATAAGCATTTTATTAGTTGGCTACTTCTCGATATCTTTATAGGACCCGAGATATATGGGTTTAAAGCTGACGGCATGGCTAGTCTTCTAATATATAGTAGAGGGCCTACGGTATTTGAAAACCCACTTTTTCTCAATATCCAAAACATCAATCATATGATTAAGAACTCGATACTTGAGTTCGAAATCTTCCTGAGACGATGCGGTAAGTGATGGACTGGCGTTCACCTAAAAAAAGAATCTTAAAAACCCATAAATCTCTTGCTTATCTTCACAGCTCAATGAGCACAAAAAGCCAATTGTTCGAAACGAAAAAAAAAATGTTTTTCAATTTTTGAAGTTAATGTCCAAGACAAATGGGAAATCAGATAACAACCTCTAACAGCCATGGCTTCAGATTT</canonical>
            <polymorphic>AACTACTAAATGCCTATTATTTCTATGAACAAAAATAGAATTGCTCCAATGCTCTACCTTTGCTCTTCAGGATTTATTGAAATGACCTATCTAGATTCACGAAAAAAAGTTCAGTTCCAGAACACCACTCTCTCTCTCTCTCTCTGTCCCTCCCAAATCCCAAAAAATCTAACAGCTGATCGATCATGAAAAGGTGATTAAATTTCAGACAGCTATGTCGTGTCGACAAACGAGACTCTCTAATTTTCGTGATTCAGATTTTGATGGTGCACTTTTAATGACCGCCGTCTGACGACACATGCATTGGGAAAAGGAGGAGGAGGATCAAGACACACTGTAATGACAACTCACCCAATCTCAAATTCAACTGCGCTCCGAAAAACGGCTGAGCATGTCTTGCCACTTTGCATAATTCCACAGGCTTGCTATTCCGCACCAAAATGTCAAATCCACCGATTTGGTTCTCGTTTCCCAGAAGTCTGAAAAATTAGCTAAATTTKTTAAGAATTACCGTAAACCATAAACTTTAAGTCCATATATCTCCGTTCATATAAGAGGTATCAAAAGGTAATCAACTGATAAAATATTTATGACATTATGATAAGCATTTTATTAGTTGGCTACTTCTCGATATCTTTATAGGACCCGAGATATATGGGTTTAAAGCTGACGGCATGGCTAGTCTTCTAATATATAGTAGAGGGCCTACGGTATTTGAAAACCCACTTTTTCTCAATATCCAAAACATCAATCATATGATTAAGAACTCGATACTTGAGTTCGAAATCTTCCTGAGACGATGCGGTAAGTGATGGACTGGCGTTCACCTAAAAAAAGAATCTTAAAAACCCATAAATCTCTTGCTTATCTTCACAGCTCAATGAGCACAAAAAGCCAATTGTTCGAAACGAAAAAAAAAATGTTTTTCAATTTTTGAAGTTAATGTCCAAGACAAATGGGAAATCAGATAACAACCTCTAACAGCCATGGCTTCAGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCAAAATGTCAAATCCAC</pcr_primer_p1>
		<pcr_primer_p2>AATACCGTAGGCCCTCTACTA</pcr_primer_p2>
		<pcr_amplicon_size>282</pcr_amplicon_size>
		<canonical_amplicon>CACCAAAATGTCAAATCCACCGATTTGGTTCTCGTTTCCCAGAAGTCTGAAAAATTAGCTAAATTTGTTAAGAATTACCGTAAACCATAAACTTTAAGTCCATATATCTCCGTTCATATAAGAGGTATCAAAAGGTAATCAACTGATAAAATATTTATGACATTATGATAAGCATTTTATTAGTTGGCTACTTCTCGATATCTTTATAGGACCCGAGATATATGGGTTTAAAGCTGACGGCATGGCTAGTCTTCTAATATATAGTAGAGGGCCTACGGTATT</canonical_amplicon>
		<polymorphic_amplicon>CACCAAAATGTCAAATCCACCGATTTGGTTCTCGTTTCCCAGAAGTCTGAAAAATTAGCTAAATTTKTTAAGAATTACCGTAAACCATAAACTTTAAGTCCATATATCTCCGTTCATATAAGAGGTATCAAAAGGTAATCAACTGATAAAATATTTATGACATTATGATAAGCATTTTATTAGTTGGCTACTTCTCGATATCTTTATAGGACCCGAGATATATGGGTTTAAAGCTGACGGCATGGCTAGTCTTCTAATATATAGTAGAGGGCCTACGGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10511</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>70198</contig_pos>
        <strand>+</strand>
        <context>ACTTGAGYTC[A/G]AAATCTTCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAATATCCAAAACATCAATCATATGATTAAGAACTCGATACTTGAGTTC</left_flank>
        <right_flank>AAATCTTCCTGAGACGATGCGGTAAGTGATGGACTGGCGTTCACCTAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCGTCTGACGACACATGCATTGGGAAAAGGAGGAGGAGGATCAAGACACACTGTAATGACAACTCACCCAATCTCAAATTCAACTGCGCTCCGAAAAACGGCTGAGCATGTCTTGCCACTTTGCATAATTCCACAGGCTTGCTATTCCGCACCAAAATGTCAAATCCACCGATTTGGTTCTCGTTTCCCAGAAGTCTGAAAAATTAGCTAAATTTGTTAAGAATTACCGTAAACCATAAACTTTAAGTCCATATATCTCCGTTCATATAAGAGGTATCAAAAGGTAATCAACTGATAAAATATTTATGACATTATGATAAGCATTTTATTAGTTGGCTACTTCTCGATATCTTTATAGGACCCGAGATATATGGGTTTAAAGCTGACGGCATGGCTAGTCTTCTAATATATAGTAGAGGGCCTACGGTATTTGAAAACCCACTTTTTCTCAATATCCAAAACATCAATCATATGATTAAGAACTCGATACTTGAGTTCGAAATCTTCCTGAGACGATGCGGTAAGTGATGGACTGGCGTTCACCTAAAAAAAGAATCTTAAAAACCCATAAATCTCTTGCTTATCTTCACAGCTCAATGAGCACAAAAAGCCAATTGTTCGAAACGAAAAAAAAAATGTTTTTCAATTTTTGAAGTTAATGTCCAAGACAAATGGGAAATCAGATAACAACCTCTAACAGCCATGGCTTCAGATTTTCATCAAAGAGGATGTCGTAGCCGTAGAGTTCGAAGCAGTGGGTGTCCTGGAAAAAAAAGATAATTGAAAGCCCAATTATCTCGGCTCCTATGAGAGATATTAAAAATCTGTCAACTGATAAAATACTCCTGATATTGTGATAAATATATTATCAGTTGTCAAACTTTTGATATCGTTTATAGGACCCGAGATAATTGAGCTCAAAGTGGAGTGGTACCTGTATGATCAAGTTTTGCACGCTTTTCAGACTTTCGATGATCACTTTCGCCAAATCATTCATCG</canonical>
            <polymorphic>GCCGTCTGACGACACATGCATTGGGAAAAGGAGGAGGAGGATCAAGACACACTGTAATGACAACTCACCCAATCTCAAATTCAACTGCGCTCCGAAAAACGGCTGAGCATGTCTTGCCACTTTGCATAATTCCACAGGCTTGCTATTCCGCACCAAAATGTCAAATCCACCGATTTGGTTCTCGTTTCCCAGAAGTCTGAAAAATTAGCTAAATTTGTTAAGAATTACCGTAAACCATAAACTTTAAGTCCATATATCTCCGTTCATATAAGAGGTATCAAAAGGTAATCAACTGATAAAATATTTATGACATTATGATAAGCATTTTATTAGTTGGCTACTTCTCGATATCTTTATAGGACCCGAGATATATGGGTTTAAAGCTGACGGCATGGCTAGTCTTCTAATATATAGTAGAGGGCCTACGGTATTTGAAAACCCACTTTTTCTCAATATCCAAAACATCAATCATATGATTAAGAACTCGATACTTGAGTTCRAAATCTTCCTGAGACGATGCGGTAAGTGATGGACTGGCGTTCACCTAAAAAAAGAATCTTAAAAACCCATAAATCTCTTGCTTATCTTCACAGCTCAATGAGCACAAAAAGCCAATTGTTCGAAACGAAAAAAAAAATGTTTTTCAATTTTTGAAGTTAATGTCCAAGACAAATGGGAAATCAGATAACAACCTCTAACAGCCATGGCTTCAGATTTTCATCAAAGAGGATGTCGTAGCCGTAGAGTTCGAAGCAGTGGGTGTCCTGGAAAAAAAAGATAATTGAAAGCCCAATTATCTCGGCTCCTATGAGAGATATTAAAAATCTGTCAACTGATAAAATACTCCTGATATTGTGATAAATATATTATCAGTTGTCAAACTTTTGATATCGTTTATAGGACCCGAGATAATTGAGCTCAAAGTGGAGTGGTACCTGTATGATCAAGTTTTGCACGCTTTTCAGACTTTCGATGATCACTTTCGCCAAATCATTCATCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>498 252 128 122</canonical_bands>
                <polymorphic_bands>620 252 128</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>346 222 140 128 122 29 13</canonical_bands>
                <polymorphic_bands>346 222 140 135 128 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATTTGAAAACCCACTTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>ATTTGTCTTGGACATTAACTTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTATTTGAAAACCCACTTTTTCTCAATATCCAAAACATCAATCATATGATTAAGAACTCGATACTTGAGTTCGAAATCTTCCTGAGACGATGCGGTAAGTGATGGACTGGCGTTCACCTAAAAAAAGAATCTTAAAAACCCATAAATCTCTTGCTTATCTTCACAGCTCAATGAGCACAAAAAGCCAATTGTTCGAAACGAAAAAAAAAATGTTTTTCAATTTTTGAAGTTAATGTCCAAGACAAAT</canonical_amplicon>
		<polymorphic_amplicon>GTATTTGAAAACCCACTTTTTCTCAATATCCAAAACATCAATCATATGATTAAGAACTCGATACTTGAGTTCRAAATCTTCCTGAGACGATGCGGTAAGTGATGGACTGGCGTTCACCTAAAAAAAGAATCTTAAAAACCCATAAATCTCTTGCTTATCTTCACAGCTCAATGAGCACAAAAAGCCAATTGTTCGAAACGAAAAAAAAAATGTTTTTCAATTTTTGAAGTTAATGTCCAAGACAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10512</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>70195</contig_pos>
        <strand>+</strand>
        <context>GATACTTGAG[C/T]TCRAAATCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTCAATATCCAAAACATCAATCATATGATTAAGAACTCGATACTTGAG</left_flank>
        <right_flank>TCGAAATCTTCCTGAGACGATGCGGTAAGTGATGGACTGGCGTTCACCTA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCGCCGTCTGACGACACATGCATTGGGAAAAGGAGGAGGAGGATCAAGACACACTGTAATGACAACTCACCCAATCTCAAATTCAACTGCGCTCCGAAAAACGGCTGAGCATGTCTTGCCACTTTGCATAATTCCACAGGCTTGCTATTCCGCACCAAAATGTCAAATCCACCGATTTGGTTCTCGTTTCCCAGAAGTCTGAAAAATTAGCTAAATTTGTTAAGAATTACCGTAAACCATAAACTTTAAGTCCATATATCTCCGTTCATATAAGAGGTATCAAAAGGTAATCAACTGATAAAATATTTATGACATTATGATAAGCATTTTATTAGTTGGCTACTTCTCGATATCTTTATAGGACCCGAGATATATGGGTTTAAAGCTGACGGCATGGCTAGTCTTCTAATATATAGTAGAGGGCCTACGGTATTTGAAAACCCACTTTTTCTCAATATCCAAAACATCAATCATATGATTAAGAACTCGATACTTGAGTTCGAAATCTTCCTGAGACGATGCGGTAAGTGATGGACTGGCGTTCACCTAAAAAAAGAATCTTAAAAACCCATAAATCTCTTGCTTATCTTCACAGCTCAATGAGCACAAAAAGCCAATTGTTCGAAACGAAAAAAAAAATGTTTTTCAATTTTTGAAGTTAATGTCCAAGACAAATGGGAAATCAGATAACAACCTCTAACAGCCATGGCTTCAGATTTTCATCAAAGAGGATGTCGTAGCCGTAGAGTTCGAAGCAGTGGGTGTCCTGGAAAAAAAAGATAATTGAAAGCCCAATTATCTCGGCTCCTATGAGAGATATTAAAAATCTGTCAACTGATAAAATACTCCTGATATTGTGATAAATATATTATCAGTTGTCAAACTTTTGATATCGTTTATAGGACCCGAGATAATTGAGCTCAAAGTGGAGTGGTACCTGTATGATCAAGTTTTGCACGCTTTTCAGACTTTCGATGATCACTTTCGCCAAATCATTCA</canonical>
            <polymorphic>ACCGCCGTCTGACGACACATGCATTGGGAAAAGGAGGAGGAGGATCAAGACACACTGTAATGACAACTCACCCAATCTCAAATTCAACTGCGCTCCGAAAAACGGCTGAGCATGTCTTGCCACTTTGCATAATTCCACAGGCTTGCTATTCCGCACCAAAATGTCAAATCCACCGATTTGGTTCTCGTTTCCCAGAAGTCTGAAAAATTAGCTAAATTTGTTAAGAATTACCGTAAACCATAAACTTTAAGTCCATATATCTCCGTTCATATAAGAGGTATCAAAAGGTAATCAACTGATAAAATATTTATGACATTATGATAAGCATTTTATTAGTTGGCTACTTCTCGATATCTTTATAGGACCCGAGATATATGGGTTTAAAGCTGACGGCATGGCTAGTCTTCTAATATATAGTAGAGGGCCTACGGTATTTGAAAACCCACTTTTTCTCAATATCCAAAACATCAATCATATGATTAAGAACTCGATACTTGAGYTCGAAATCTTCCTGAGACGATGCGGTAAGTGATGGACTGGCGTTCACCTAAAAAAAGAATCTTAAAAACCCATAAATCTCTTGCTTATCTTCACAGCTCAATGAGCACAAAAAGCCAATTGTTCGAAACGAAAAAAAAAATGTTTTTCAATTTTTGAAGTTAATGTCCAAGACAAATGGGAAATCAGATAACAACCTCTAACAGCCATGGCTTCAGATTTTCATCAAAGAGGATGTCGTAGCCGTAGAGTTCGAAGCAGTGGGTGTCCTGGAAAAAAAAGATAATTGAAAGCCCAATTATCTCGGCTCCTATGAGAGATATTAAAAATCTGTCAACTGATAAAATACTCCTGATATTGTGATAAATATATTATCAGTTGTCAAACTTTTGATATCGTTTATAGGACCCGAGATAATTGAGCTCAAAGTGGAGTGGTACCTGTATGATCAAGTTTTGCACGCTTTTCAGACTTTCGATGATCACTTTCGCCAAATCATTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 249 128 122</canonical_bands>
                <polymorphic_bands>623 249 128</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATTTGAAAACCCACTTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>ATTTGTCTTGGACATTAACTTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTATTTGAAAACCCACTTTTTCTCAATATCCAAAACATCAATCATATGATTAAGAACTCGATACTTGAGTTCGAAATCTTCCTGAGACGATGCGGTAAGTGATGGACTGGCGTTCACCTAAAAAAAGAATCTTAAAAACCCATAAATCTCTTGCTTATCTTCACAGCTCAATGAGCACAAAAAGCCAATTGTTCGAAACGAAAAAAAAAATGTTTTTCAATTTTTGAAGTTAATGTCCAAGACAAAT</canonical_amplicon>
		<polymorphic_amplicon>GTATTTGAAAACCCACTTTTTCTCAATATCCAAAACATCAATCATATGATTAAGAACTCGATACTTGAGYTCGAAATCTTCCTGAGACGATGCGGTAAGTGATGGACTGGCGTTCACCTAAAAAAAGAATCTTAAAAACCCATAAATCTCTTGCTTATCTTCACAGCTCAATGAGCACAAAAAGCCAATTGTTCGAAACGAAAAAAAAAATGTTTTTCAATTTTTGAAGTTAATGTCCAAGACAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10513</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>70180</contig_pos>
        <strand>+</strand>
        <context>TATGATTAAG[A/G]ACTCGATACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAAAACCCACTTTTTCTCAATATCCAAAACATCAATCATATGATTAAG</left_flank>
        <right_flank>ACTCGATACTTGAGTTCGAAATCTTCCTGAGACGATGCGGTAAGTGATGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGCACTTTTAATGACCGCCGTCTGACGACACATGCATTGGGAAAAGGAGGAGGAGGATCAAGACACACTGTAATGACAACTCACCCAATCTCAAATTCAACTGCGCTCCGAAAAACGGCTGAGCATGTCTTGCCACTTTGCATAATTCCACAGGCTTGCTATTCCGCACCAAAATGTCAAATCCACCGATTTGGTTCTCGTTTCCCAGAAGTCTGAAAAATTAGCTAAATTTGTTAAGAATTACCGTAAACCATAAACTTTAAGTCCATATATCTCCGTTCATATAAGAGGTATCAAAAGGTAATCAACTGATAAAATATTTATGACATTATGATAAGCATTTTATTAGTTGGCTACTTCTCGATATCTTTATAGGACCCGAGATATATGGGTTTAAAGCTGACGGCATGGCTAGTCTTCTAATATATAGTAGAGGGCCTACGGTATTTGAAAACCCACTTTTTCTCAATATCCAAAACATCAATCATATGATTAAGAACTCGATACTTGAGTTCGAAATCTTCCTGAGACGATGCGGTAAGTGATGGACTGGCGTTCACCTAAAAAAAGAATCTTAAAAACCCATAAATCTCTTGCTTATCTTCACAGCTCAATGAGCACAAAAAGCCAATTGTTCGAAACGAAAAAAAAAATGTTTTTCAATTTTTGAAGTTAATGTCCAAGACAAATGGGAAATCAGATAACAACCTCTAACAGCCATGGCTTCAGATTTTCATCAAAGAGGATGTCGTAGCCGTAGAGTTCGAAGCAGTGGGTGTCCTGGAAAAAAAAGATAATTGAAAGCCCAATTATCTCGGCTCCTATGAGAGATATTAAAAATCTGTCAACTGATAAAATACTCCTGATATTGTGATAAATATATTATCAGTTGTCAAACTTTTGATATCGTTTATAGGACCCGAGATAATTGAGCTCAAAGTGGAGTGGTACCTGTATGATCAAGTTTTGCACGCTTTTCAGACTTTCGATGATCACTT</canonical>
            <polymorphic>GGTGCACTTTTAATGACCGCCGTCTGACGACACATGCATTGGGAAAAGGAGGAGGAGGATCAAGACACACTGTAATGACAACTCACCCAATCTCAAATTCAACTGCGCTCCGAAAAACGGCTGAGCATGTCTTGCCACTTTGCATAATTCCACAGGCTTGCTATTCCGCACCAAAATGTCAAATCCACCGATTTGGTTCTCGTTTCCCAGAAGTCTGAAAAATTAGCTAAATTTGTTAAGAATTACCGTAAACCATAAACTTTAAGTCCATATATCTCCGTTCATATAAGAGGTATCAAAAGGTAATCAACTGATAAAATATTTATGACATTATGATAAGCATTTTATTAGTTGGCTACTTCTCGATATCTTTATAGGACCCGAGATATATGGGTTTAAAGCTGACGGCATGGCTAGTCTTCTAATATATAGTAGAGGGCCTACGGTATTTGAAAACCCACTTTTTCTCAATATCCAAAACATCAATCATATGATTAAGRACTCGATACTTGAGTTCGAAATCTTCCTGAGACGATGCGGTAAGTGATGGACTGGCGTTCACCTAAAAAAAGAATCTTAAAAACCCATAAATCTCTTGCTTATCTTCACAGCTCAATGAGCACAAAAAGCCAATTGTTCGAAACGAAAAAAAAAATGTTTTTCAATTTTTGAAGTTAATGTCCAAGACAAATGGGAAATCAGATAACAACCTCTAACAGCCATGGCTTCAGATTTTCATCAAAGAGGATGTCGTAGCCGTAGAGTTCGAAGCAGTGGGTGTCCTGGAAAAAAAAGATAATTGAAAGCCCAATTATCTCGGCTCCTATGAGAGATATTAAAAATCTGTCAACTGATAAAATACTCCTGATATTGTGATAAATATATTATCAGTTGTCAAACTTTTGATATCGTTTATAGGACCCGAGATAATTGAGCTCAAAGTGGAGTGGTACCTGTATGATCAAGTTTTGCACGCTTTTCAGACTTTCGATGATCACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATTTGAAAACCCACTTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>ATTTGTCTTGGACATTAACTTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTATTTGAAAACCCACTTTTTCTCAATATCCAAAACATCAATCATATGATTAAGAACTCGATACTTGAGTTCGAAATCTTCCTGAGACGATGCGGTAAGTGATGGACTGGCGTTCACCTAAAAAAAGAATCTTAAAAACCCATAAATCTCTTGCTTATCTTCACAGCTCAATGAGCACAAAAAGCCAATTGTTCGAAACGAAAAAAAAAATGTTTTTCAATTTTTGAAGTTAATGTCCAAGACAAAT</canonical_amplicon>
		<polymorphic_amplicon>GTATTTGAAAACCCACTTTTTCTCAATATCCAAAACATCAATCATATGATTAAGRACTCGATACTTGAGTTCGAAATCTTCCTGAGACGATGCGGTAAGTGATGGACTGGCGTTCACCTAAAAAAAGAATCTTAAAAACCCATAAATCTCTTGCTTATCTTCACAGCTCAATGAGCACAAAAAGCCAATTGTTCGAAACGAAAAAAAAAATGTTTTTCAATTTTTGAAGTTAATGTCCAAGACAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10514</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>72963</contig_pos>
        <strand></strand>
        <context>caaaatctgc[A/C]cttggcccgc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGC</left_flank>
        <right_flank>CTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTGTTATCAGACACTCTTGATAATGGCTTTTAAAAAAATGAAAAAAAAGTTCCTTATCACTAACCGGAGCCAGCAAAAAAAAGCAAAAAAGAGTGCCCAGTTTCATTTCGTTGACAGATTTTTTTCTCTGGCACAAAAAACCCCAAAAAAAGTTTGATTGACAGAAAGGCAAGGTCCGTAGTCCCACTATCAGTAGAGAGCAGCTAGAAAAAATGCTAGAAAAAATGGCCATAATGACAACTATAAAAAAGAGGCCCCTAATCGAAAGAATTACGACTCAATGTCAGAGTACTCGCCATTTGTGCAAATTGCTTCATTATTGCCTACTTCTAATATGAATCGATATATTCGGGATGGAGACAATCCGGATATCACTGAGGAGAGAATGAAGGCGACATTCGATGCGGATAGGTTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCCGACGTCCTAGATCATTAATTATTTCCAGTCCCGCCGAGAAGTCGAAAAGTACATCGAAGATCACAAAGAGCTTCAGGACACCCATCCGACGCCATTCATGAGTCGAGAAGAATTAATCGACAATTCGGTTCGGAAGCTAGCTGGAATGGCAAAGTACCACAAGATGATCGACATGACCAATATTGAGAAGACCACTTATTTTTTGCAGTGAGCCCTAAAAACAGC</canonical>
            <polymorphic>CATTGTTATCAGACACTCTTGATAATGGCTTTTAAAAAAATGAAAAAAAAGTTCCTTATCACTAACCGGAGCCAGCAAAAAAAAGCAAAAAAGAGTGCCCAGTTTCATTTCGTTGACAGATTTTTTTCTCTGGCACAAAAAACCCCAAAAAAAGTTTGATTGACAGAAAGGCAAGGTCCGTAGTCCCACTATCAGTAGAGAGCAGCTAGAAAAAATGCTAGAAAAAATGGCCATAATGACAACTATAAAAAAGAGGCCCCTAATCGAAAGAATTACGACTCAATGTCAGAGTACTCGCCATTTGTGCAAATTGCTTCATTATTGCCTACTTCTAATATGAATCGATATATTCGGGATGGAGACAATCCGGATATCACTGAGGAGAGAATGAAGGCGACATTCGATGCGGATAGGTTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCMCTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCCGACGTCCTAGATCATTAATTATTTCCAGTCCCGCCGAGAAGTCGAAAAGTACATCGAAGATCACAAAGAGCTTCAGGACACCCATCCGACGCCATTCATGAGTCGAGAAGAATTAATCGACAATTCGGTTCGGAAGCTAGCTGGAATGGCAAAGTACCACAAGATGATCGACATGACCAATATTGAGAAGACCACTTATTTTTTGCAGTGAGCCCTAAAAACAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>482 306 192 20</canonical_bands>
                <polymorphic_bands>674 306 20</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>262 118 79 76 70 53 46 44 42 38 36 35 21 17 17 16 15 15</canonical_bands>
                <polymorphic_bands>306 118 79 76 70 53 46 42 38 36 35 21 17 17 16 15 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTAAAAGATTGAAGGTGAGTTA</pcr_primer_p1>
		<pcr_primer_p2>GGCTTGTATCTTGTGATAGGA</pcr_primer_p2>
		<pcr_amplicon_size>337</pcr_amplicon_size>
		<canonical_amplicon>GCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCC</canonical_amplicon>
		<polymorphic_amplicon>GCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCMCTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10515</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>72947</contig_pos>
        <strand>+</strand>
        <context>TTGGGCAAGT[A/T]GAggccaaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGGTGCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGT</left_flank>
        <right_flank>GAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACCCTTTTTCTGAATCATTGTTATCAGACACTCTTGATAATGGCTTTTAAAAAAATGAAAAAAAAGTTCCTTATCACTAACCGGAGCCAGCAAAAAAAAGCAAAAAAGAGTGCCCAGTTTCATTTCGTTGACAGATTTTTTTCTCTGGCACAAAAAACCCCAAAAAAAGTTTGATTGACAGAAAGGCAAGGTCCGTAGTCCCACTATCAGTAGAGAGCAGCTAGAAAAAATGCTAGAAAAAATGGCCATAATGACAACTATAAAAAAGAGGCCCCTAATCGAAAGAATTACGACTCAATGTCAGAGTACTCGCCATTTGTGCAAATTGCTTCATTATTGCCTACTTCTAATATGAATCGATATATTCGGGATGGAGACAATCCGGATATCACTGAGGAGAGAATGAAGGCGACATTCGATGCGGATAGGTTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCCGACGTCCTAGATCATTAATTATTTCCAGTCCCGCCGAGAAGTCGAAAAGTACATCGAAGATCACAAAGAGCTTCAGGACACCCATCCGACGCCATTCATGAGTCGAGAAGAATTAATCGACAATTCGGTTCGGAAGCTAGCTGGAATGGCAAAGTACCACAAGATGATCGACATGACCAATATTGAGAAGACCACTTATTTTTTGCAGT</canonical>
            <polymorphic>TACCCTTTTTCTGAATCATTGTTATCAGACACTCTTGATAATGGCTTTTAAAAAAATGAAAAAAAAGTTCCTTATCACTAACCGGAGCCAGCAAAAAAAAGCAAAAAAGAGTGCCCAGTTTCATTTCGTTGACAGATTTTTTTCTCTGGCACAAAAAACCCCAAAAAAAGTTTGATTGACAGAAAGGCAAGGTCCGTAGTCCCACTATCAGTAGAGAGCAGCTAGAAAAAATGCTAGAAAAAATGGCCATAATGACAACTATAAAAAAGAGGCCCCTAATCGAAAGAATTACGACTCAATGTCAGAGTACTCGCCATTTGTGCAAATTGCTTCATTATTGCCTACTTCTAATATGAATCGATATATTCGGGATGGAGACAATCCGGATATCACTGAGGAGAGAATGAAGGCGACATTCGATGCGGATAGGTTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTWGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCCGACGTCCTAGATCATTAATTATTTCCAGTCCCGCCGAGAAGTCGAAAAGTACATCGAAGATCACAAAGAGCTTCAGGACACCCATCCGACGCCATTCATGAGTCGAGAAGAATTAATCGACAATTCGGTTCGGAAGCTAGCTGGAATGGCAAAGTACCACAAGATGATCGACATGACCAATATTGAGAAGACCACTTATTTTTTGCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGGTGCTAAAAGATTGAAG</pcr_primer_p1>
		<pcr_primer_p2>GGCTTGTATCTTGTGATAGGA</pcr_primer_p2>
		<pcr_amplicon_size>343</pcr_amplicon_size>
		<canonical_amplicon>GGAGGTGCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCC</canonical_amplicon>
		<polymorphic_amplicon>GGAGGTGCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTWGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10516</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>72927</contig_pos>
        <strand>+</strand>
        <context>GTGAGTTATA[A/C]AAGTCGGGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGAGTTATA</left_flank>
        <right_flank>AAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCCCATAAAATAATCACTACCCTTTTTCTGAATCATTGTTATCAGACACTCTTGATAATGGCTTTTAAAAAAATGAAAAAAAAGTTCCTTATCACTAACCGGAGCCAGCAAAAAAAAGCAAAAAAGAGTGCCCAGTTTCATTTCGTTGACAGATTTTTTTCTCTGGCACAAAAAACCCCAAAAAAAGTTTGATTGACAGAAAGGCAAGGTCCGTAGTCCCACTATCAGTAGAGAGCAGCTAGAAAAAATGCTAGAAAAAATGGCCATAATGACAACTATAAAAAAGAGGCCCCTAATCGAAAGAATTACGACTCAATGTCAGAGTACTCGCCATTTGTGCAAATTGCTTCATTATTGCCTACTTCTAATATGAATCGATATATTCGGGATGGAGACAATCCGGATATCACTGAGGAGAGAATGAAGGCGACATTCGATGCGGATAGGTTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCCGACGTCCTAGATCATTAATTATTTCCAGTCCCGCCGAGAAGTCGAAAAGTACATCGAAGATCACAAAGAGCTTCAGGACACCCATCCGACGCCATTCATGAGTCGAGAAGAATTAATCGACAATTCGGTTCGGAAGCTAGCTGGAATGGCAAAGTACCACAAGATGATCGACATGACCAATATTGAGAA</canonical>
            <polymorphic>TTTCCCCATAAAATAATCACTACCCTTTTTCTGAATCATTGTTATCAGACACTCTTGATAATGGCTTTTAAAAAAATGAAAAAAAAGTTCCTTATCACTAACCGGAGCCAGCAAAAAAAAGCAAAAAAGAGTGCCCAGTTTCATTTCGTTGACAGATTTTTTTCTCTGGCACAAAAAACCCCAAAAAAAGTTTGATTGACAGAAAGGCAAGGTCCGTAGTCCCACTATCAGTAGAGAGCAGCTAGAAAAAATGCTAGAAAAAATGGCCATAATGACAACTATAAAAAAGAGGCCCCTAATCGAAAGAATTACGACTCAATGTCAGAGTACTCGCCATTTGTGCAAATTGCTTCATTATTGCCTACTTCTAATATGAATCGATATATTCGGGATGGAGACAATCCGGATATCACTGAGGAGAGAATGAAGGCGACATTCGATGCGGATAGGTTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGAGTTATAMAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCCGACGTCCTAGATCATTAATTATTTCCAGTCCCGCCGAGAAGTCGAAAAGTACATCGAAGATCACAAAGAGCTTCAGGACACCCATCCGACGCCATTCATGAGTCGAGAAGAATTAATCGACAATTCGGTTCGGAAGCTAGCTGGAATGGCAAAGTACCACAAGATGATCGACATGACCAATATTGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATATCACTGAGGAGAGAATGAA</pcr_primer_p1>
		<pcr_primer_p2>GGCTTGTATCTTGTGATAGGA</pcr_primer_p2>
		<pcr_amplicon_size>406</pcr_amplicon_size>
		<canonical_amplicon>GATATCACTGAGGAGAGAATGAAGGCGACATTCGATGCGGATAGGTTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCC</canonical_amplicon>
		<polymorphic_amplicon>GATATCACTGAGGAGAGAATGAAGGCGACATTCGATGCGGATAGGTTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGAGTTATAMAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10517</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>72877</contig_pos>
        <strand>+</strand>
        <context>ATGYGGATAG[A/G]TTCACAGAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCCGGATATCACTGAGGAGAGAATGAAGGCGACATTCGATGCGGATAG</left_flank>
        <right_flank>TTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGAGTTATAC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTCACCCTTGAGTGCCAGGTAGCATTGTACATTTCAAAAGCAATAACATTTCCCCATAAAATAATCACTACCCTTTTTCTGAATCATTGTTATCAGACACTCTTGATAATGGCTTTTAAAAAAATGAAAAAAAAGTTCCTTATCACTAACCGGAGCCAGCAAAAAAAAGCAAAAAAGAGTGCCCAGTTTCATTTCGTTGACAGATTTTTTTCTCTGGCACAAAAAACCCCAAAAAAAGTTTGATTGACAGAAAGGCAAGGTCCGTAGTCCCACTATCAGTAGAGAGCAGCTAGAAAAAATGCTAGAAAAAATGGCCATAATGACAACTATAAAAAAGAGGCCCCTAATCGAAAGAATTACGACTCAATGTCAGAGTACTCGCCATTTGTGCAAATTGCTTCATTATTGCCTACTTCTAATATGAATCGATATATTCGGGATGGAGACAATCCGGATATCACTGAGGAGAGAATGAAGGCGACATTCGATGCGGATAGGTTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCCGACGTCCTAGATCATTAATTATTTCCAGTCCCGCCGAGAAGTCGAAAAGTACATCGAAGATCACAAAGAGCTTCAGGACACCCATCCGACGCCATTCATGAGTCGAGAAGAATTAATCGACAATTCGGTTCGGAAGCTA</canonical>
            <polymorphic>TGGTCACCCTTGAGTGCCAGGTAGCATTGTACATTTCAAAAGCAATAACATTTCCCCATAAAATAATCACTACCCTTTTTCTGAATCATTGTTATCAGACACTCTTGATAATGGCTTTTAAAAAAATGAAAAAAAAGTTCCTTATCACTAACCGGAGCCAGCAAAAAAAAGCAAAAAAGAGTGCCCAGTTTCATTTCGTTGACAGATTTTTTTCTCTGGCACAAAAAACCCCAAAAAAAGTTTGATTGACAGAAAGGCAAGGTCCGTAGTCCCACTATCAGTAGAGAGCAGCTAGAAAAAATGCTAGAAAAAATGGCCATAATGACAACTATAAAAAAGAGGCCCCTAATCGAAAGAATTACGACTCAATGTCAGAGTACTCGCCATTTGTGCAAATTGCTTCATTATTGCCTACTTCTAATATGAATCGATATATTCGGGATGGAGACAATCCGGATATCACTGAGGAGAGAATGAAGGCGACATTCGATGCGGATAGRTTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCCGACGTCCTAGATCATTAATTATTTCCAGTCCCGCCGAGAAGTCGAAAAGTACATCGAAGATCACAAAGAGCTTCAGGACACCCATCCGACGCCATTCATGAGTCGAGAAGAATTAATCGACAATTCGGTTCGGAAGCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 302 200</canonical_bands>
                <polymorphic_bands>800 200</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATATTCGGGATGGAGACAAT</pcr_primer_p1>
		<pcr_primer_p2>GGCTTGTATCTTGTGATAGGA</pcr_primer_p2>
		<pcr_amplicon_size>430</pcr_amplicon_size>
		<canonical_amplicon>TATATTCGGGATGGAGACAATCCGGATATCACTGAGGAGAGAATGAAGGCGACATTCGATGCGGATAGGTTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCC</canonical_amplicon>
		<polymorphic_amplicon>TATATTCGGGATGGAGACAATCCGGATATCACTGAGGAGAGAATGAAGGCGACATTCGATGCGGATAGRTTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10518</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>72870</contig_pos>
        <strand>+</strand>
        <context>ACATTCGATG[C/T]GGATAGRTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGAGACAATCCGGATATCACTGAGGAGAGAATGAAGGCGACATTCGATG</left_flank>
        <right_flank>GGATAGGTTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACATTTTGGTCACCCTTGAGTGCCAGGTAGCATTGTACATTTCAAAAGCAATAACATTTCCCCATAAAATAATCACTACCCTTTTTCTGAATCATTGTTATCAGACACTCTTGATAATGGCTTTTAAAAAAATGAAAAAAAAGTTCCTTATCACTAACCGGAGCCAGCAAAAAAAAGCAAAAAAGAGTGCCCAGTTTCATTTCGTTGACAGATTTTTTTCTCTGGCACAAAAAACCCCAAAAAAAGTTTGATTGACAGAAAGGCAAGGTCCGTAGTCCCACTATCAGTAGAGAGCAGCTAGAAAAAATGCTAGAAAAAATGGCCATAATGACAACTATAAAAAAGAGGCCCCTAATCGAAAGAATTACGACTCAATGTCAGAGTACTCGCCATTTGTGCAAATTGCTTCATTATTGCCTACTTCTAATATGAATCGATATATTCGGGATGGAGACAATCCGGATATCACTGAGGAGAGAATGAAGGCGACATTCGATGCGGATAGGTTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCCGACGTCCTAGATCATTAATTATTTCCAGTCCCGCCGAGAAGTCGAAAAGTACATCGAAGATCACAAAGAGCTTCAGGACACCCATCCGACGCCATTCATGAGTCGAGAAGAATTAATCGACAATTCGGTTCG</canonical>
            <polymorphic>GACATTTTGGTCACCCTTGAGTGCCAGGTAGCATTGTACATTTCAAAAGCAATAACATTTCCCCATAAAATAATCACTACCCTTTTTCTGAATCATTGTTATCAGACACTCTTGATAATGGCTTTTAAAAAAATGAAAAAAAAGTTCCTTATCACTAACCGGAGCCAGCAAAAAAAAGCAAAAAAGAGTGCCCAGTTTCATTTCGTTGACAGATTTTTTTCTCTGGCACAAAAAACCCCAAAAAAAGTTTGATTGACAGAAAGGCAAGGTCCGTAGTCCCACTATCAGTAGAGAGCAGCTAGAAAAAATGCTAGAAAAAATGGCCATAATGACAACTATAAAAAAGAGGCCCCTAATCGAAAGAATTACGACTCAATGTCAGAGTACTCGCCATTTGTGCAAATTGCTTCATTATTGCCTACTTCTAATATGAATCGATATATTCGGGATGGAGACAATCCGGATATCACTGAGGAGAGAATGAAGGCGACATTCGATGYGGATAGGTTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCCGACGTCCTAGATCATTAATTATTTCCAGTCCCGCCGAGAAGTCGAAAAGTACATCGAAGATCACAAAGAGCTTCAGGACACCCATCCGACGCCATTCATGAGTCGAGAAGAATTAATCGACAATTCGGTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGGCCATAATGACAACTATAA</pcr_primer_p1>
		<pcr_primer_p2>TAACTCACCTTCAATCTTTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>AATGGCCATAATGACAACTATAAAAAAGAGGCCCCTAATCGAAAGAATTACGACTCAATGTCAGAGTACTCGCCATTTGTGCAAATTGCTTCATTATTGCCTACTTCTAATATGAATCGATATATTCGGGATGGAGACAATCCGGATATCACTGAGGAGAGAATGAAGGCGACATTCGATGCGGATAGGTTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGAGTTA</canonical_amplicon>
		<polymorphic_amplicon>AATGGCCATAATGACAACTATAAAAAAGAGGCCCCTAATCGAAAGAATTACGACTCAATGTCAGAGTACTCGCCATTTGTGCAAATTGCTTCATTATTGCCTACTTCTAATATGAATCGATATATTCGGGATGGAGACAATCCGGATATCACTGAGGAGAGAATGAAGGCGACATTCGATGYGGATAGGTTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGAGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10519</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>72728</contig_pos>
        <strand>+</strand>
        <context>GGCCCCTAAT[A/C]GAAAGAATTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGCTAGAAAAAATGGCCATAATGACAACTATAAAAAAGAGGCCCCTAAT</left_flank>
        <right_flank>GAAAGAATTACGACTCAATGTCAGAGTACTCGCCATTTGTGCAAATTGCT</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTCATTTTGGGGATACTTCTGCTCGGATTGAGTTCAAATCCGGATATTCTTATTGACAAATGACTGCCAACAAGCCCCAAAAATAGCTAAGGTAGCAGCAAGGCTTTGGGTACTGGACCGCGGCTCTCGGAGGGCCGCCCGACATTTTGGTCACCCTTGAGTGCCAGGTAGCATTGTACATTTCAAAAGCAATAACATTTCCCCATAAAATAATCACTACCCTTTTTCTGAATCATTGTTATCAGACACTCTTGATAATGGCTTTTAAAAAAATGAAAAAAAAGTTCCTTATCACTAACCGGAGCCAGCAAAAAAAAGCAAAAAAGAGTGCCCAGTTTCATTTCGTTGACAGATTTTTTTCTCTGGCACAAAAAACCCCAAAAAAAGTTTGATTGACAGAAAGGCAAGGTCCGTAGTCCCACTATCAGTAGAGAGCAGCTAGAAAAAATGCTAGAAAAAATGGCCATAATGACAACTATAAAAAAGAGGCCCCTAATCGAAAGAATTACGACTCAATGTCAGAGTACTCGCCATTTGTGCAAATTGCTTCATTATTGCCTACTTCTAATATGAATCGATATATTCGGGATGGAGACAATCCGGATATCACTGAGGAGAGAATGAAGGCGACATTCGATGCGGATAGGTTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAA</canonical>
            <polymorphic>GGTTCATTTTGGGGATACTTCTGCTCGGATTGAGTTCAAATCCGGATATTCTTATTGACAAATGACTGCCAACAAGCCCCAAAAATAGCTAAGGTAGCAGCAAGGCTTTGGGTACTGGACCGCGGCTCTCGGAGGGCCGCCCGACATTTTGGTCACCCTTGAGTGCCAGGTAGCATTGTACATTTCAAAAGCAATAACATTTCCCCATAAAATAATCACTACCCTTTTTCTGAATCATTGTTATCAGACACTCTTGATAATGGCTTTTAAAAAAATGAAAAAAAAGTTCCTTATCACTAACCGGAGCCAGCAAAAAAAAGCAAAAAAGAGTGCCCAGTTTCATTTCGTTGACAGATTTTTTTCTCTGGCACAAAAAACCCCAAAAAAAGTTTGATTGACAGAAAGGCAAGGTCCGTAGTCCCACTATCAGTAGAGAGCAGCTAGAAAAAATGCTAGAAAAAATGGCCATAATGACAACTATAAAAAAGAGGCCCCTAATMGAAAGAATTACGACTCAATGTCAGAGTACTCGCCATTTGTGCAAATTGCTTCATTATTGCCTACTTCTAATATGAATCGATATATTCGGGATGGAGACAATCCGGATATCACTGAGGAGAGAATGAAGGCGACATTCGATGCGGATAGGTTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 363 78 59</canonical_bands>
                <polymorphic_bands>578 363 59</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAGTAGAGAGCAGCTAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACCTCCATGATAGAACTCTGTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCAGTAGAGAGCAGCTAGAAAAAATGCTAGAAAAAATGGCCATAATGACAACTATAAAAAAGAGGCCCCTAATCGAAAGAATTACGACTCAATGTCAGAGTACTCGCCATTTGTGCAAATTGCTTCATTATTGCCTACTTCTAATATGAATCGATATATTCGGGATGGAGACAATCCGGATATCACTGAGGAGAGAATGAAGGCGACATTCGATGCGGATAGGTTCACAGAGTTCTATCATGGAGGT</canonical_amplicon>
		<polymorphic_amplicon>TCAGTAGAGAGCAGCTAGAAAAAATGCTAGAAAAAATGGCCATAATGACAACTATAAAAAAGAGGCCCCTAATMGAAAGAATTACGACTCAATGTCAGAGTACTCGCCATTTGTGCAAATTGCTTCATTATTGCCTACTTCTAATATGAATCGATATATTCGGGATGGAGACAATCCGGATATCACTGAGGAGAGAATGAAGGCGACATTCGATGCGGATAGGTTCACAGAGTTCTATCATGGAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10557</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>98281</contig_pos>
        <strand>+</strand>
        <context>TTAAAAACTT[C/T]AACATAAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGTGCTTAAGGCGTGTTAGTATTGTAAAACAGGCAAATTTAAAAACTT</left_flank>
        <right_flank>AACATAAAAGGTGATATGGGTTAGTTGGGCGTTTTGGAACATGGTTGTGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATAAATTGTTACTGATATTATGGTAAACATTTTATCAGTTGACAAAAATTTGATATCTTTCATAGAAATCAAGATAAACTGGTTCAAAGTTAGGGACCCTTCCATTACAGGTTTCGTGGTGTGTCAAACTTACCAGATAATTCAGTAGAGAATGCGCTGCTTGACTTGGAAGTGGATGAAATCTGAGGACCAATTTCCTTAGTTGAGACATCAGAACCTCCTGAAGAATACGTAATTTTATCATGCTCCAAATATGATTCAATGCAGACAAGTTAAAAAACCGTTAGTGCTCGAATAGTAAGTCACCTCACTCGAGCTCAATTATCTCGGTTGCCATGAAAGATATAAAAAATTTGTCAACTGATAAAATGTTAATGATATTATGATAAACAATTTATCAGTTGACAAAATTTTGACATCTTTCAAAAGAGCCGAGATAACTGAGCTCAAAGTGCTTAAGGCGTGTTAGTATTGTAAAACAGGCAAATTTAAAAACTTTAACATAAAAGGTGATATGGGTTAGTTGGGCGTTTTGGAACATGGTTGTGAGTGAGTTTTTTAAAAAAAAGACGTTTTCATGCTTTATTTCAGATTCTCATGCCATCAAAAGGACCCTTGGCTTGTCTGCAACTTACATAGGCGGGAGTAGGTGTAAATTCGTTGGTGAGGACCTGAAACGGGGGAGACGGAGGGTCTAAAGGGAACACAAGAAGAGAAGCTAAATTTGAGATTGTTTTAACTAGAACTGCAATACTAAAGGAACACAAAAAATCAATACTACAGTAACCCTACTAACCTGACGATCTCGATTAGTGAGCTTCTCGAGAAAGTGTCTTAAGAACAGTTGTGGCTCTTCTACAATGCATGTCCAGATGACTTTCTTCGCCACATCACCAACAGAAACTCCATTGTTGTCGACTTGAGGGTCGTCGAGAAGTTCGATGATTTGAGGGACAACGGATAGAAGAGCGGATGGGAACAAGGGTTGGGCTACTGGCA</canonical>
            <polymorphic>GATAAATTGTTACTGATATTATGGTAAACATTTTATCAGTTGACAAAAATTTGATATCTTTCATAGAAATCAAGATAAACTGGTTCAAAGTTAGGGACCCTTCCATTACAGGTTTCGTGGTGTGTCAAACTTACCAGATAATTCAGTAGAGAATGCGCTGCTTGACTTGGAAGTGGATGAAATCTGAGGACCAATTTCCTTAGTTGAGACATCAGAACCTCCTGAAGAATACGTAATTTTATCATGCTCCAAATATGATTCAATGCAGACAAGTTAAAAAACCGTTAGTGCTCGAATAGTAAGTCACCTCACTCGAGCTCAATTATCTCGGTTGCCATGAAAGATATAAAAAATTTGTCAACTGATAAAATGTTAATGATATTATGATAAACAATTTATCAGTTGACAAAATTTTGACATCTTTCAAAAGAGCCGAGATAACTGAGCTCAAAGTGCTTAAGGCGTGTTAGTATTGTAAAACAGGCAAATTTAAAAACTTYAACATAAAAGGTGATATGGGTTAGTTGGGCGTTTTGGAACATGGTTGTGAGTGAGTTTTTTAAAAAAAAGACGTTTTCATGCTTTATTTCAGATTCTCATGCCATCAAAAGGACCCTTGGCTTGTCTGCAACTTACATAGGCGGGAGTAGGTGTAAATTCGTTGGTGAGGACCTGAAACGGGGGAGACGGAGGGTCTAAAGGGAACACAAGAAGAGAAGCTAAATTTGAGATTGTTTTAACTAGAACTGCAATACTAAAGGAACACAAAAAATCAATACTACAGTAACCCTACTAACCTGACGATCTCGATTAGTGAGCTTCTCGAGAAAGTGTCTTAAGAACAGTTGTGGCTCTTCTACAATGCATGTCCAGATGACTTTCTTCGCCACATCACCAACAGAAACTCCATTGTTGTCGACTTGAGGGTCGTCGAGAAGTTCGATGATTTGAGGGACAACGGATAGAAGAGCGGATGGGAACAAGGGTTGGGCTACTGGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>274 177 164 99 99 84 61 33 9</canonical_bands>
                <polymorphic_bands>274 177 164 99 99 84 70 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCAATGCAGACAAGTTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AACTCACTCACAACCATGTTC</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>ATTCAATGCAGACAAGTTAAAAAACCGTTAGTGCTCGAATAGTAAGTCACCTCACTCGAGCTCAATTATCTCGGTTGCCATGAAAGATATAAAAAATTTGTCAACTGATAAAATGTTAATGATATTATGATAAACAATTTATCAGTTGACAAAATTTTGACATCTTTCAAAAGAGCCGAGATAACTGAGCTCAAAGTGCTTAAGGCGTGTTAGTATTGTAAAACAGGCAAATTTAAAAACTTTAACATAAAAGGTGATATGGGTTAGTTGGGCGTTTTGGAACATGGTTGTGAGTGAGTT</canonical_amplicon>
		<polymorphic_amplicon>ATTCAATGCAGACAAGTTAAAAAACCGTTAGTGCTCGAATAGTAAGTCACCTCACTCGAGCTCAATTATCTCGGTTGCCATGAAAGATATAAAAAATTTGTCAACTGATAAAATGTTAATGATATTATGATAAACAATTTATCAGTTGACAAAATTTTGACATCTTTCAAAAGAGCCGAGATAACTGAGCTCAAAGTGCTTAAGGCGTGTTAGTATTGTAAAACAGGCAAATTTAAAAACTTYAACATAAAAGGTGATATGGGTTAGTTGGGCGTTTTGGAACATGGTTGTGAGTGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10558</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>98343</contig_pos>
        <strand>+</strand>
        <context>TGAGTTTTTT[A/T]AAAAAAAGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGATATGGGTTAGTTGGGCGTTTTGGAACATGGTTGTGAGTGAGTTTTTT</left_flank>
        <right_flank>AAAAAAAGACGTTTTCATGCTTTATTTCAGATTCTCATGCCATCAAAAGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGAAATCAAGATAAACTGGTTCAAAGTTAGGGACCCTTCCATTACAGGTTTCGTGGTGTGTCAAACTTACCAGATAATTCAGTAGAGAATGCGCTGCTTGACTTGGAAGTGGATGAAATCTGAGGACCAATTTCCTTAGTTGAGACATCAGAACCTCCTGAAGAATACGTAATTTTATCATGCTCCAAATATGATTCAATGCAGACAAGTTAAAAAACCGTTAGTGCTCGAATAGTAAGTCACCTCACTCGAGCTCAATTATCTCGGTTGCCATGAAAGATATAAAAAATTTGTCAACTGATAAAATGTTAATGATATTATGATAAACAATTTATCAGTTGACAAAATTTTGACATCTTTCAAAAGAGCCGAGATAACTGAGCTCAAAGTGCTTAAGGCGTGTTAGTATTGTAAAACAGGCAAATTTAAAAACTTTAACATAAAAGGTGATATGGGTTAGTTGGGCGTTTTGGAACATGGTTGTGAGTGAGTTTTTTAAAAAAAAGACGTTTTCATGCTTTATTTCAGATTCTCATGCCATCAAAAGGACCCTTGGCTTGTCTGCAACTTACATAGGCGGGAGTAGGTGTAAATTCGTTGGTGAGGACCTGAAACGGGGGAGACGGAGGGTCTAAAGGGAACACAAGAAGAGAAGCTAAATTTGAGATTGTTTTAACTAGAACTGCAATACTAAAGGAACACAAAAAATCAATACTACAGTAACCCTACTAACCTGACGATCTCGATTAGTGAGCTTCTCGAGAAAGTGTCTTAAGAACAGTTGTGGCTCTTCTACAATGCATGTCCAGATGACTTTCTTCGCCACATCACCAACAGAAACTCCATTGTTGTCGACTTGAGGGTCGTCGAGAAGTTCGATGATTTGAGGGACAACGGATAGAAGAGCGGATGGGAACAAGGGTTGGGCTACTGGCATCACGTGGCGAGTATGTTGGTGGACGTTCTCGGATTCTGAAAAAAGAATGTATACCAGAAGA</canonical>
            <polymorphic>ATAGAAATCAAGATAAACTGGTTCAAAGTTAGGGACCCTTCCATTACAGGTTTCGTGGTGTGTCAAACTTACCAGATAATTCAGTAGAGAATGCGCTGCTTGACTTGGAAGTGGATGAAATCTGAGGACCAATTTCCTTAGTTGAGACATCAGAACCTCCTGAAGAATACGTAATTTTATCATGCTCCAAATATGATTCAATGCAGACAAGTTAAAAAACCGTTAGTGCTCGAATAGTAAGTCACCTCACTCGAGCTCAATTATCTCGGTTGCCATGAAAGATATAAAAAATTTGTCAACTGATAAAATGTTAATGATATTATGATAAACAATTTATCAGTTGACAAAATTTTGACATCTTTCAAAAGAGCCGAGATAACTGAGCTCAAAGTGCTTAAGGCGTGTTAGTATTGTAAAACAGGCAAATTTAAAAACTTTAACATAAAAGGTGATATGGGTTAGTTGGGCGTTTTGGAACATGGTTGTGAGTGAGTTTTTTWAAAAAAAGACGTTTTCATGCTTTATTTCAGATTCTCATGCCATCAAAAGGACCCTTGGCTTGTCTGCAACTTACATAGGCGGGAGTAGGTGTAAATTCGTTGGTGAGGACCTGAAACGGGGGAGACGGAGGGTCTAAAGGGAACACAAGAAGAGAAGCTAAATTTGAGATTGTTTTAACTAGAACTGCAATACTAAAGGAACACAAAAAATCAATACTACAGTAACCCTACTAACCTGACGATCTCGATTAGTGAGCTTCTCGAGAAAGTGTCTTAAGAACAGTTGTGGCTCTTCTACAATGCATGTCCAGATGACTTTCTTCGCCACATCACCAACAGAAACTCCATTGTTGTCGACTTGAGGGTCGTCGAGAAGTTCGATGATTTGAGGGACAACGGATAGAAGAGCGGATGGGAACAAGGGTTGGGCTACTGGCATCACGTGGCGAGTATGTTGGTGGACGTTCTCGGATTCTGAAAAAAGAATGTATACCAGAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 429 70</canonical_bands>
                <polymorphic_bands>571 429</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>226 212 177 99 99 84 61 33 9</canonical_bands>
                <polymorphic_bands>238 226 212 99 99 84 33 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAAGGTGATATGGGTTAGTTG</pcr_primer_p1>
		<pcr_primer_p2>TGCAGTTCTAGTTAAAACAATCTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TAAAAGGTGATATGGGTTAGTTGGGCGTTTTGGAACATGGTTGTGAGTGAGTTTTTTAAAAAAAAGACGTTTTCATGCTTTATTTCAGATTCTCATGCCATCAAAAGGACCCTTGGCTTGTCTGCAACTTACATAGGCGGGAGTAGGTGTAAATTCGTTGGTGAGGACCTGAAACGGGGGAGACGGAGGGTCTAAAGGGAACACAAGAAGAGAAGCTAAATTTGAGATTGTTTTAACTAGAACTGCA</canonical_amplicon>
		<polymorphic_amplicon>TAAAAGGTGATATGGGTTAGTTGGGCGTTTTGGAACATGGTTGTGAGTGAGTTTTTTWAAAAAAAGACGTTTTCATGCTTTATTTCAGATTCTCATGCCATCAAAAGGACCCTTGGCTTGTCTGCAACTTACATAGGCGGGAGTAGGTGTAAATTCGTTGGTGAGGACCTGAAACGGGGGAGACGGAGGGTCTAAAGGGAACACAAGAAGAGAAGCTAAATTTGAGATTGTTTTAACTAGAACTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10577</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>162293</contig_pos>
        <strand>+</strand>
        <context>TTTTGAGAAT[C/T]CTGATTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAGTAAGAGCGGCGATGAGCAAAACGTGAAGAGCAAGGATTTTGAGAAT</left_flank>
        <right_flank>CTGATTTTTGCCTTCTTTTCCTTCTTCTCGACTTCTTCTCTCATTTCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGATTTTGAACTATTTTTTTTCCACAGAATTCTGACTAATCGCGACAAAATAGGTCATTTTTCATTGTTTTAATGTAATTTTTTGCGATTTTTCGGATTTATAAGTAAAAATAGCTCAAAATTACCTAAAAATCGAAAAAAACAGGCCAGAACATAATTACGAAAGTACATGCTCCTTTAAATGCGCACGGTGAATTTTCCGGAACGTTTTTCAAAAAAAATTGTTTCGCGCTCTTTTTATTTTTGGTCGCAATTTCGCTGCGTAGCGACTCAGTAATTCATTTTTTAAGCATGCGCATCGATACTCAGCGCGCTTAACTACAGTATTCGCGTTAGAGCGCATTTACTTTAGAAAGTTCACCGTGAATGCGCCTTTAAGAATTTCGCCACCGGATCTAACAATACGCTCAGTAGCGCGTTGAAATTAGGCCACTAACCCATTCATTGGAAGTAAGAGCGGCGATGAGCAAAACGTGAAGAGCAAGGATTTTGAGAATTCTGATTTTTGCCTTCTTTTCCTTCTTCTCGACTTCTTCTCTCATTTCTGATCTCCATTGCACGTCATCAACTCCAGAATCCTCTAATTCCTCTTCAGAAGAGTAGTGTTCATCTGAATCCACTGCTTCTTGAACTACTTCGAATTCCGAAGCTTCAGACTCTTCCACTGAAGTCTCTGACCTGGGTATCTCAGCCAGTGGTGCTATCACTTGATGGCTTGATATAATACTAGATACTGTATCAGATGGTCCCATTGAAGTTCCGAAATAATAGGAATGCAGGTAGAATAGGGGCATATATGGTGGGCAAGGTTTCTGTCGTAGAAATGCTGAGATTGGTCCAAAGGGCTAGTCTTAGCATGGGCGGTCCAATCACCTGTCCATTGGCTGAAGCCTAAAGGGTGAAGGGTCCATAATTATAGGTGGATTAAATGGCAGATGCGTTTTCCCCTATTTGGTCCTTGGGGACCTTAAAAACAAACACAAGGCGAATAATTCATA</canonical>
            <polymorphic>ATCGATTTTGAACTATTTTTTTTCCACAGAATTCTGACTAATCGCGACAAAATAGGTCATTTTTCATTGTTTTAATGTAATTTTTTGCGATTTTTCGGATTTATAAGTAAAAATAGCTCAAAATTACCTAAAAATCGAAAAAAACAGGCCAGAACATAATTACGAAAGTACATGCTCCTTTAAATGCGCACGGTGAATTTTCCGGAACGTTTTTCAAAAAAAATTGTTTCGCGCTCTTTTTATTTTTGGTCGCAATTTCGCTGCGTAGCGACTCAGTAATTCATTTTTTAAGCATGCGCATCGATACTCAGCGCGCTTAACTACAGTATTCGCGTTAGAGCGCATTTACTTTAGAAAGTTCACCGTGAATGCGCCTTTAAGAATTTCGCCACCGGATCTAACAATACGCTCAGTAGCGCGTTGAAATTAGGCCACTAACCCATTCATTGGAAGTAAGAGCGGCGATGAGCAAAACGTGAAGAGCAAGGATTTTGAGAATYCTGATTTTTGCCTTCTTTTCCTTCTTCTCGACTTCTTCTCTCATTTCTGATCTCCATTGCACGTCATCAACTCCAGAATCCTCTAATTCCTCTTCAGAAGAGTAGTGTTCATCTGAATCCACTGCTTCTTGAACTACTTCGAATTCCGAAGCTTCAGACTCTTCCACTGAAGTCTCTGACCTGGGTATCTCAGCCAGTGGTGCTATCACTTGATGGCTTGATATAATACTAGATACTGTATCAGATGGTCCCATTGAAGTTCCGAAATAATAGGAATGCAGGTAGAATAGGGGCATATATGGTGGGCAAGGTTTCTGTCGTAGAAATGCTGAGATTGGTCCAAAGGGCTAGTCTTAGCATGGGCGGTCCAATCACCTGTCCATTGGCTGAAGCCTAAAGGGTGAAGGGTCCATAATTATAGGTGGATTAAATGGCAGATGCGTTTTCCCCTATTTGGTCCTTGGGGACCTTAAAAACAAACACAAGGCGAATAATTCATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>359 186 166 145 115 29</canonical_bands>
                <polymorphic_bands>359 260 186 166 29</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>467 359 145 29</canonical_bands>
                <polymorphic_bands>612 359 29</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>405 237 66 62 48 46 35 33 21 20 18 9</canonical_bands>
                <polymorphic_bands>451 237 66 62 48 35 33 21 20 18 9</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>272 104 88 79 72 57 49 43 43 38 36 32 29 26 24 8</canonical_bands>
                <polymorphic_bands>272 160 104 79 57 49 43 43 38 36 32 29 26 24 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAACCCATTCATTGGAAGTAA</pcr_primer_p1>
		<pcr_primer_p2>GTCAGAGACTTCAGTGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTAACCCATTCATTGGAAGTAAGAGCGGCGATGAGCAAAACGTGAAGAGCAAGGATTTTGAGAATTCTGATTTTTGCCTTCTTTTCCTTCTTCTCGACTTCTTCTCTCATTTCTGATCTCCATTGCACGTCATCAACTCCAGAATCCTCTAATTCCTCTTCAGAAGAGTAGTGTTCATCTGAATCCACTGCTTCTTGAACTACTTCGAATTCCGAAGCTTCAGACTCTTCCACTGAAGTCTCTGAC</canonical_amplicon>
		<polymorphic_amplicon>CTAACCCATTCATTGGAAGTAAGAGCGGCGATGAGCAAAACGTGAAGAGCAAGGATTTTGAGAATYCTGATTTTTGCCTTCTTTTCCTTCTTCTCGACTTCTTCTCTCATTTCTGATCTCCATTGCACGTCATCAACTCCAGAATCCTCTAATTCCTCTTCAGAAGAGTAGTGTTCATCTGAATCCACTGCTTCTTGAACTACTTCGAATTCCGAAGCTTCAGACTCTTCCACTGAAGTCTCTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10578</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>163882</contig_pos>
        <strand>+</strand>
        <context>YTGCAGCAAC[C/T]TTGATTAAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGTTCGATGAAGTTGGTTTCAGATGGAGCGAAGCCAAATCTGCAGCAAC</left_flank>
        <right_flank>TTGATTAAACATGTTCAAATCAAATGTCACTAACCCATTCTCCATTCCTG</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTTTGAATGAACCGAGATAATTGAATTTGAAGTTTATGTATTTCCTTCTATTGAACGACACCCTTAACCATCAACTTTGAGCTCAATTATCTCGGTTGCTTTGAAAGATATCAGAAATCTGTTAACTGATAAAATATTGCTCATATTACGATAAATAATTTATTGGTCGACAAGTTTTCGATATCTTTCACAGGAGCTGAGATAATGGAGCTCAAAGTTGATGGTTCGGGTGAGAGCTTTGAGGATCTATTGGAGGAAATACGGTAGTAGGTTCCGAACTTTCAATGATGAAAAAGATTAGCATTTTAGAACGCTCCTCTTTTCTCTTACCTTAGCCAGCGCCGAAATAATCTTCGATCCACCGGATCCTCCGATAACCATCCTAACTTTTTTGGTGACATGATCGAAAATCACCATTGGAGACATACTGCTCATCGGTCGCTTTCCTGGTTCGATGAAGTTGGTTTCAGATGGAGCGAAGCCAAATCTGCAGCAACCTTGATTAAACATGTTCAAATCAAATGTCACTAACCCATTCTCCATTCCTGGGGTACTGAAGTCATCCATCTCGTCGTTCCATAGAATTCCGAACTCGGTGGACTCGACTGCGGCACCGAACCTTAAATGATAGCTGAATTATCTCGATTCCTGTAAAAGATATCAGAAACTTGTCAACTGACAAAATTTTTATCATAATATCAATAATGTTTTATCAGTTGACATACTGTTGCTATCTCACATAGGAACCGAGATAATTGGGCTCAAACCTTACCATCTATTAATAGTTGTTGTCACCGAGACTCCATTCCCATATTGATCCATAGCGGACACGTGGCTGGTACCATGGTCCGGTGGAACGTACTGTGCGATGCCTCCATAGTTCTTTGATGGTTGCGCCTTCTCCTCCATTCTATCAATCACCCATTGAGTGTATTCTGGGGTAGTTAAGTTTTTGGAAAGTTCCAGAGCCCCTTTGACAAAGTCATGGTCTCCGAGAA</canonical>
            <polymorphic>TCTTTTGAATGAACCGAGATAATTGAATTTGAAGTTTATGTATTTCCTTCTATTGAACGACACCCTTAACCATCAACTTTGAGCTCAATTATCTCGGTTGCTTTGAAAGATATCAGAAATCTGTTAACTGATAAAATATTGCTCATATTACGATAAATAATTTATTGGTCGACAAGTTTTCGATATCTTTCACAGGAGCTGAGATAATGGAGCTCAAAGTTGATGGTTCGGGTGAGAGCTTTGAGGATCTATTGGAGGAAATACGGTAGTAGGTTCCGAACTTTCAATGATGAAAAAGATTAGCATTTTAGAACGCTCCTCTTTTCTCTTACCTTAGCCAGCGCCGAAATAATCTTCGATCCACCGGATCCTCCGATAACCATCCTAACTTTTTTGGTGACATGATCGAAAATCACCATTGGAGACATACTGCTCATCGGTCGCTTTCCTGGTTCGATGAAGTTGGTTTCAGATGGAGCGAAGCCAAATCTGCAGCAACYTTGATTAAACATGTTCAAATCAAATGTCACTAACCCATTCTCCATTCCTGGGGTACTGAAGTCATCCATCTCGTCGTTCCATAGAATTCCGAACTCGGTGGACTCGACTGCGGCACCGAACCTTAAATGATAGCTGAATTATCTCGATTCCTGTAAAAGATATCAGAAACTTGTCAACTGACAAAATTTTTATCATAATATCAATAATGTTTTATCAGTTGACATACTGTTGCTATCTCACATAGGAACCGAGATAATTGGGCTCAAACCTTACCATCTATTAATAGTTGTTGTCACCGAGACTCCATTCCCATATTGATCCATAGCGGACACGTGGCTGGTACCATGGTCCGGTGGAACGTACTGTGCGATGCCTCCATAGTTCTTTGATGGTTGCGCCTTCTCCTCCATTCTATCAATCACCCATTGAGTGTATTCTGGGGTAGTTAAGTTTTTGGAAAGTTCCAGAGCCCCTTTGACAAAGTCATGGTCTCCGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCTCTTTTCTCTTACCTTAGC</pcr_primer_p1>
		<pcr_primer_p2>ACGAGATGGATGACTTCAGTA</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>CTCCTCTTTTCTCTTACCTTAGCCAGCGCCGAAATAATCTTCGATCCACCGGATCCTCCGATAACCATCCTAACTTTTTTGGTGACATGATCGAAAATCACCATTGGAGACATACTGCTCATCGGTCGCTTTCCTGGTTCGATGAAGTTGGTTTCAGATGGAGCGAAGCCAAATCTGCAGCAACCTTGATTAAACATGTTCAAATCAAATGTCACTAACCCATTCTCCATTCCTGGGGTACTGAAGTCATCCATCTCGT</canonical_amplicon>
		<polymorphic_amplicon>CTCCTCTTTTCTCTTACCTTAGCCAGCGCCGAAATAATCTTCGATCCACCGGATCCTCCGATAACCATCCTAACTTTTTTGGTGACATGATCGAAAATCACCATTGGAGACATACTGCTCATCGGTCGCTTTCCTGGTTCGATGAAGTTGGTTTCAGATGGAGCGAAGCCAAATCTGCAGCAACYTTGATTAAACATGTTCAAATCAAATGTCACTAACCCATTCTCCATTCCTGGGGTACTGAAGTCATCCATCTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10579</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>179277</contig_pos>
        <strand>+</strand>
        <context>TTTGTTCTAG[A/C]TGAGCTAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGGGAGCACGAAGTCTCCGGCCTGGAATATTTGCTTGAATTTGTTCTAG</left_flank>
        <right_flank>TGAGCTAGAAAGCTGGTTTCCGGGCACTGTGCCAAAAAACTAATCAAATC</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGATGGTGTTGGCGTGCATGTTGTTCTCCTCGAGGATCTTCTGAAGGGACTCGGAGACGTCTTGGGCTTCCTTCTCGGCGCAGCTGAAAAAGGCAATAAATAAAATTTAAAGCTTGGATAAAGACTCCTGATACTTACTTGAACATATGCTCCTGATCGCAGATACAGTGTTGCTGGGCTTGGTAGTTGCGCGAGAACTCGGCACTGTTCTCGAACTCCTCAATGCATCCATGCTCTTTGGTGAAGCCCACTGGACATGGGTTTGGTGGCTCACAGTAGGCGGGCAAGACGTTGTCCGACTTGACCTCTTGACGCTCCTGATAGTTATCCTCTTCCAGAAGCTTCTGCTCTCCCTCTCCGGCTCCACCAGAGATGTGCTTGACGCCGTAAGTCGAGAGGTCCGGGAGGTTTTCCGCGTCACGGGAGATCAAATCGATGAAGTCACCGGATGGGAGCACGAAGTCTCCGGCCTGGAATATTTGCTTGAATTTGTTCTAGCTGAGCTAGAAAGCTGGTTTCCGGGCACTGTGCCAAAAAACTAATCAAATCAACCCTATGAGTCATCTTCTCTCACCCACATGTTAGCCTTGACTTGAATAAGAAGAATTAGCTGAATGGCCATAGTACAAAATCAAATCACTCCTTCTATAGAAATGAGCTAGATCAAGTCAGAAACACCCCGTCATGTGTTATTTGAACTTTTGAACAGATACGAATTCTGAGAATCTCTAGAATTTCTATTGTGGTTCTAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAA</canonical>
            <polymorphic>GCGATGGTGTTGGCGTGCATGTTGTTCTCCTCGAGGATCTTCTGAAGGGACTCGGAGACGTCTTGGGCTTCCTTCTCGGCGCAGCTGAAAAAGGCAATAAATAAAATTTAAAGCTTGGATAAAGACTCCTGATACTTACTTGAACATATGCTCCTGATCGCAGATACAGTGTTGCTGGGCTTGGTAGTTGCGCGAGAACTCGGCACTGTTCTCGAACTCCTCAATGCATCCATGCTCTTTGGTGAAGCCCACTGGACATGGGTTTGGTGGCTCACAGTAGGCGGGCAAGACGTTGTCCGACTTGACCTCTTGACGCTCCTGATAGTTATCCTCTTCCAGAAGCTTCTGCTCTCCCTCTCCGGCTCCACCAGAGATGTGCTTGACGCCGTAAGTCGAGAGGTCCGGGAGGTTTTCCGCGTCACGGGAGATCAAATCGATGAAGTCACCGGATGGGAGCACGAAGTCTCCGGCCTGGAATATTTGCTTGAATTTGTTCTAGMTGAGCTAGAAAGCTGGTTTCCGGGCACTGTGCCAAAAAACTAATCAAATCAACCCTATGAGTCATCTTCTCTCACCCACATGTTAGCCTTGACTTGAATAAGAAGAATTAGCTGAATGGCCATAGTACAAAATCAAATCACTCCTTCTATAGAAATGAGCTAGATCAAGTCAGAAACACCCCGTCATGTGTTATTTGAACTTTTGAACAGATACGAATTCTGAGAATCTCTAGAATTTCTATTGTGGTTCTAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>229 187 157 120 99 84 48 34 29 8 5</canonical_bands>
                <polymorphic_bands>229 187 162 120 99 84 48 34 29 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GCTNAGC</site>
                <isoschizomers>
                    <enzyme>BlpI</enzyme>
                    <enzyme>Bpu1102I</enzyme>
                    <enzyme>Bsp1720I</enzyme>
                    <enzyme>CelII</enzyme>
                    <enzyme>EspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 280 220</canonical_bands>
                <polymorphic_bands>720 280</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>163 120 108 74 72 68 67 66 40 34 29 29 25 24 23 20 17 8 8 5</canonical_bands>
                <polymorphic_bands>163 120 108 74 72 68 67 66 40 34 34 29 25 24 23 20 17 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGCTCCTGATAGTTATCCTCT</pcr_primer_p1>
		<pcr_primer_p2>GACTCATAGGGTTGATTTGATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGCTCCTGATAGTTATCCTCTTCCAGAAGCTTCTGCTCTCCCTCTCCGGCTCCACCAGAGATGTGCTTGACGCCGTAAGTCGAGAGGTCCGGGAGGTTTTCCGCGTCACGGGAGATCAAATCGATGAAGTCACCGGATGGGAGCACGAAGTCTCCGGCCTGGAATATTTGCTTGAATTTGTTCTAGCTGAGCTAGAAAGCTGGTTTCCGGGCACTGTGCCAAAAAACTAATCAAATCAACCCTATGAGTC</canonical_amplicon>
		<polymorphic_amplicon>CGCTCCTGATAGTTATCCTCTTCCAGAAGCTTCTGCTCTCCCTCTCCGGCTCCACCAGAGATGTGCTTGACGCCGTAAGTCGAGAGGTCCGGGAGGTTTTCCGCGTCACGGGAGATCAAATCGATGAAGTCACCGGATGGGAGCACGAAGTCTCCGGCCTGGAATATTTGCTTGAATTTGTTCTAGMTGAGCTAGAAAGCTGGTTTCCGGGCACTGTGCCAAAAAACTAATCAAATCAACCCTATGAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10580</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>179492</contig_pos>
        <strand>+</strand>
        <context>GAACAGATAC[A/G]AATTCTGAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAAGTCAGAAACACCCCGTCATGTGTTATTTGAACTTTTGAACAGATAC</left_flank>
        <right_flank>AATTCTGAGAATCTCTAGAATTTCTATTGTGGTTCTAAATTCCCAGAACT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCCTCAATGCATCCATGCTCTTTGGTGAAGCCCACTGGACATGGGTTTGGTGGCTCACAGTAGGCGGGCAAGACGTTGTCCGACTTGACCTCTTGACGCTCCTGATAGTTATCCTCTTCCAGAAGCTTCTGCTCTCCCTCTCCGGCTCCACCAGAGATGTGCTTGACGCCGTAAGTCGAGAGGTCCGGGAGGTTTTCCGCGTCACGGGAGATCAAATCGATGAAGTCACCGGATGGGAGCACGAAGTCTCCGGCCTGGAATATTTGCTTGAATTTGTTCTAGCTGAGCTAGAAAGCTGGTTTCCGGGCACTGTGCCAAAAAACTAATCAAATCAACCCTATGAGTCATCTTCTCTCACCCACATGTTAGCCTTGACTTGAATAAGAAGAATTAGCTGAATGGCCATAGTACAAAATCAAATCACTCCTTCTATAGAAATGAGCTAGATCAAGTCAGAAACACCCCGTCATGTGTTATTTGAACTTTTGAACAGATACGAATTCTGAGAATCTCTAGAATTTCTATTGTGGTTCTAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCT</canonical>
            <polymorphic>ACTCCTCAATGCATCCATGCTCTTTGGTGAAGCCCACTGGACATGGGTTTGGTGGCTCACAGTAGGCGGGCAAGACGTTGTCCGACTTGACCTCTTGACGCTCCTGATAGTTATCCTCTTCCAGAAGCTTCTGCTCTCCCTCTCCGGCTCCACCAGAGATGTGCTTGACGCCGTAAGTCGAGAGGTCCGGGAGGTTTTCCGCGTCACGGGAGATCAAATCGATGAAGTCACCGGATGGGAGCACGAAGTCTCCGGCCTGGAATATTTGCTTGAATTTGTTCTAGCTGAGCTAGAAAGCTGGTTTCCGGGCACTGTGCCAAAAAACTAATCAAATCAACCCTATGAGTCATCTTCTCTCACCCACATGTTAGCCTTGACTTGAATAAGAAGAATTAGCTGAATGGCCATAGTACAAAATCAAATCACTCCTTCTATAGAAATGAGCTAGATCAAGTCAGAAACACCCCGTCATGTGTTATTTGAACTTTTGAACAGATACRAATTCTGAGAATCTCTAGAATTTCTATTGTGGTTCTAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>304 272 228 159 19 18</canonical_bands>
                <polymorphic_bands>304 272 246 159 19</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTAATCAAATCAACCCTATGA</pcr_primer_p1>
		<pcr_primer_p2>GAAAGGAGTTCTGGGAATTTAG</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>AACTAATCAAATCAACCCTATGAGTCATCTTCTCTCACCCACATGTTAGCCTTGACTTGAATAAGAAGAATTAGCTGAATGGCCATAGTACAAAATCAAATCACTCCTTCTATAGAAATGAGCTAGATCAAGTCAGAAACACCCCGTCATGTGTTATTTGAACTTTTGAACAGATACGAATTCTGAGAATCTCTAGAATTTCTATTGTGGTTCTAAATTCCCAGAACTCCTTTC</canonical_amplicon>
		<polymorphic_amplicon>AACTAATCAAATCAACCCTATGAGTCATCTTCTCTCACCCACATGTTAGCCTTGACTTGAATAAGAAGAATTAGCTGAATGGCCATAGTACAAAATCAAATCACTCCTTCTATAGAAATGAGCTAGATCAAGTCAGAAACACCCCGTCATGTGTTATTTGAACTTTTGAACAGATACRAATTCTGAGAATCTCTAGAATTTCTATTGTGGTTCTAAATTCCCAGAACTCCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10581</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>179642</contig_pos>
        <strand></strand>
        <context>aatttatttg[C/A]tgrcagattt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTG</left_flank>
        <right_flank>TGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACCAGAGATGTGCTTGACGCCGTAAGTCGAGAGGTCCGGGAGGTTTTCCGCGTCACGGGAGATCAAATCGATGAAGTCACCGGATGGGAGCACGAAGTCTCCGGCCTGGAATATTTGCTTGAATTTGTTCTAGCTGAGCTAGAAAGCTGGTTTCCGGGCACTGTGCCAAAAAACTAATCAAATCAACCCTATGAGTCATCTTCTCTCACCCACATGTTAGCCTTGACTTGAATAAGAAGAATTAGCTGAATGGCCATAGTACAAAATCAAATCACTCCTTCTATAGAAATGAGCTAGATCAAGTCAGAAACACCCCGTCATGTGTTATTTGAACTTTTGAACAGATACGAATTCTGAGAATCTCTAGAATTTCTATTGTGGTTCTAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGATCATAATGTGTTCTAAAACATCTACCATTTAGTAT</canonical>
            <polymorphic>CACCAGAGATGTGCTTGACGCCGTAAGTCGAGAGGTCCGGGAGGTTTTCCGCGTCACGGGAGATCAAATCGATGAAGTCACCGGATGGGAGCACGAAGTCTCCGGCCTGGAATATTTGCTTGAATTTGTTCTAGCTGAGCTAGAAAGCTGGTTTCCGGGCACTGTGCCAAAAAACTAATCAAATCAACCCTATGAGTCATCTTCTCTCACCCACATGTTAGCCTTGACTTGAATAAGAAGAATTAGCTGAATGGCCATAGTACAAAATCAAATCACTCCTTCTATAGAAATGAGCTAGATCAAGTCAGAAACACCCCGTCATGTGTTATTTGAACTTTTGAACAGATACGAATTCTGAGAATCTCTAGAATTTCTATTGTGGTTCTAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGMTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGATCATAATGTGTTCTAAAACATCTACCATTTAGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATTCCCAGAACTCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATCTAATGGGTCATCCTATGC</pcr_primer_p2>
		<pcr_amplicon_size>581</pcr_amplicon_size>
		<canonical_amplicon>TAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGAT</canonical_amplicon>
		<polymorphic_amplicon>TAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGMTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10582</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>179645</contig_pos>
        <strand></strand>
        <context>ttatttgmtg[A/G]cagattttta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTG</left_flank>
        <right_flank>CAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAGATGTGCTTGACGCCGTAAGTCGAGAGGTCCGGGAGGTTTTCCGCGTCACGGGAGATCAAATCGATGAAGTCACCGGATGGGAGCACGAAGTCTCCGGCCTGGAATATTTGCTTGAATTTGTTCTAGCTGAGCTAGAAAGCTGGTTTCCGGGCACTGTGCCAAAAAACTAATCAAATCAACCCTATGAGTCATCTTCTCTCACCCACATGTTAGCCTTGACTTGAATAAGAAGAATTAGCTGAATGGCCATAGTACAAAATCAAATCACTCCTTCTATAGAAATGAGCTAGATCAAGTCAGAAACACCCCGTCATGTGTTATTTGAACTTTTGAACAGATACGAATTCTGAGAATCTCTAGAATTTCTATTGTGGTTCTAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGATCATAATGTGTTCTAAAACATCTACCATTTAGTATTTG</canonical>
            <polymorphic>CAGAGATGTGCTTGACGCCGTAAGTCGAGAGGTCCGGGAGGTTTTCCGCGTCACGGGAGATCAAATCGATGAAGTCACCGGATGGGAGCACGAAGTCTCCGGCCTGGAATATTTGCTTGAATTTGTTCTAGCTGAGCTAGAAAGCTGGTTTCCGGGCACTGTGCCAAAAAACTAATCAAATCAACCCTATGAGTCATCTTCTCTCACCCACATGTTAGCCTTGACTTGAATAAGAAGAATTAGCTGAATGGCCATAGTACAAAATCAAATCACTCCTTCTATAGAAATGAGCTAGATCAAGTCAGAAACACCCCGTCATGTGTTATTTGAACTTTTGAACAGATACGAATTCTGAGAATCTCTAGAATTTCTATTGTGGTTCTAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGRCAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGATCATAATGTGTTCTAAAACATCTACCATTTAGTATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATTCCCAGAACTCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATCTAATGGGTCATCCTATGC</pcr_primer_p2>
		<pcr_amplicon_size>581</pcr_amplicon_size>
		<canonical_amplicon>TAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGAT</canonical_amplicon>
		<polymorphic_amplicon>TAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGRCAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10583</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>179694</contig_pos>
        <strand></strand>
        <context>aggtcaaagt[T/C]agaagGACCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGT</left_flank>
        <right_flank>AGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCACGGGAGATCAAATCGATGAAGTCACCGGATGGGAGCACGAAGTCTCCGGCCTGGAATATTTGCTTGAATTTGTTCTAGCTGAGCTAGAAAGCTGGTTTCCGGGCACTGTGCCAAAAAACTAATCAAATCAACCCTATGAGTCATCTTCTCTCACCCACATGTTAGCCTTGACTTGAATAAGAAGAATTAGCTGAATGGCCATAGTACAAAATCAAATCACTCCTTCTATAGAAATGAGCTAGATCAAGTCAGAAACACCCCGTCATGTGTTATTTGAACTTTTGAACAGATACGAATTCTGAGAATCTCTAGAATTTCTATTGTGGTTCTAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGATCATAATGTGTTCTAAAACATCTACCATTTAGTATTTGGACTGCAAATTTTTTTTGGGTCAAACGTAGAAAATATGTGCCACGTCAT</canonical>
            <polymorphic>GTCACGGGAGATCAAATCGATGAAGTCACCGGATGGGAGCACGAAGTCTCCGGCCTGGAATATTTGCTTGAATTTGTTCTAGCTGAGCTAGAAAGCTGGTTTCCGGGCACTGTGCCAAAAAACTAATCAAATCAACCCTATGAGTCATCTTCTCTCACCCACATGTTAGCCTTGACTTGAATAAGAAGAATTAGCTGAATGGCCATAGTACAAAATCAAATCACTCCTTCTATAGAAATGAGCTAGATCAAGTCAGAAACACCCCGTCATGTGTTATTTGAACTTTTGAACAGATACGAATTCTGAGAATCTCTAGAATTTCTATTGTGGTTCTAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTYAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGATCATAATGTGTTCTAAAACATCTACCATTTAGTATTTGGACTGCAAATTTTTTTTGGGTCAAACGTAGAAAATATGTGCCACGTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATTCCCAGAACTCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATCTAATGGGTCATCCTATGC</pcr_primer_p2>
		<pcr_amplicon_size>581</pcr_amplicon_size>
		<canonical_amplicon>TAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGAT</canonical_amplicon>
		<polymorphic_amplicon>TAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTYAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10585</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>180144</contig_pos>
        <strand>+</strand>
        <context>ATTTAGTATT[C/T]GGACTGCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATGACCCATTAGATCATAATGTGTTCTAAAACATCTACCATTTAGTATT</left_flank>
        <right_flank>GGACTGCAAATTTTTTTTGGGTCAAACGTAGAAAATATGTGCCACGTCAT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGATCATAATGTGTTCTAAAACATCTACCATTTAGTATTTGGACTGCAAATTTTTTTTGGGTCAAACGTAGAAAATATGTGCCACGTCATCACTTCCTGAACGACTAAAAAGAAAAAGAAGAAGAAAAGTGGCATGCAAGGATTATGAAGAGATTTGTATTGGGGATAAAAAAATATGATGCCCACTGGATATGCTCCTTTTCAGCAGCCAAGAGAGGATGCTCTACTGGAAGCACATCTTATACGTCCACTTTGAGCTCATATAGCTCATTTCCTGGGAAAGATATCAAAAAGTAGTCAACTGATAAAATGTTTATCATAATATTACTAATATTTTATCAGTTGAAACATTTTTTATATCTCTTATGGGAACCGAGATAATTGAGCTCGAAGTGCAGGTGTAGGATGGACTTCTATTAGAGCATTCACGGTGATTGGAAGCTTTATGTAGCAAATAGATAATGATTTTTTGTAAAACGATTTATTCCAATTTGTTCTAATAACTTCGAAATCCCAGATTCCCACTATGGCGCATTAAAA</canonical>
            <polymorphic>ACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGATCATAATGTGTTCTAAAACATCTACCATTTAGTATTYGGACTGCAAATTTTTTTTGGGTCAAACGTAGAAAATATGTGCCACGTCATCACTTCCTGAACGACTAAAAAGAAAAAGAAGAAGAAAAGTGGCATGCAAGGATTATGAAGAGATTTGTATTGGGGATAAAAAAATATGATGCCCACTGGATATGCTCCTTTTCAGCAGCCAAGAGAGGATGCTCTACTGGAAGCACATCTTATACGTCCACTTTGAGCTCATATAGCTCATTTCCTGGGAAAGATATCAAAAAGTAGTCAACTGATAAAATGTTTATCATAATATTACTAATATTTTATCAGTTGAAACATTTTTTATATCTCTTATGGGAACCGAGATAATTGAGCTCGAAGTGCAGGTGTAGGATGGACTTCTATTAGAGCATTCACGGTGATTGGAAGCTTTATGTAGCAAATAGATAATGATTTTTTGTAAAACGATTTATTCCAATTTGTTCTAATAACTTCGAAATCCCAGATTCCCACTATGGCGCATTAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>XcmI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGCATAGGATGACCCATTA</pcr_primer_p1>
		<pcr_primer_p2>CTGCTGAAAAGGAGCATATC</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>TATGCATAGGATGACCCATTAGATCATAATGTGTTCTAAAACATCTACCATTTAGTATTTGGACTGCAAATTTTTTTTGGGTCAAACGTAGAAAATATGTGCCACGTCATCACTTCCTGAACGACTAAAAAGAAAAAGAAGAAGAAAAGTGGCATGCAAGGATTATGAAGAGATTTGTATTGGGGATAAAAAAATATGATGCCCACTGGATATGCTCCTTTTCAGCAG</canonical_amplicon>
		<polymorphic_amplicon>TATGCATAGGATGACCCATTAGATCATAATGTGTTCTAAAACATCTACCATTTAGTATTYGGACTGCAAATTTTTTTTGGGTCAAACGTAGAAAATATGTGCCACGTCATCACTTCCTGAACGACTAAAAAGAAAAAGAAGAAGAAAAGTGGCATGCAAGGATTATGAAGAGATTTGTATTGGGGATAAAAAAATATGATGCCCACTGGATATGCTCCTTTTCAGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10586</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>191597</contig_pos>
        <strand>+</strand>
        <context>AAATTTTTGT[A/G]AAATTTCTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAACTTCGATTTTTTTAGACAGAATTAGCTAAAAATTTGAAATTTTTGT</left_flank>
        <right_flank>AAATTTCTGACATTTTTGGACCCTGAATTGCCTTTTTATTCTGAAAATTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTAGCTGTAATTCGTCACCCGAAAAAGCCAAATTCCGGAAATCGAAAATGCGCAATTGTGAGACTATCGACAGGAGCGGAAGTTTGTGCCTATATTCCCAACGTTGGACACAATTTACAAGAGCATTCACAAGTAGGATTTGACTCCTTATTTTTTGAGAAAAGACCCCTATTTTTGTAGGTACTGGTTAAAGGAGGACGTCGACGAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGTTTTTTTTTGTCAAAACTTCGATTTTTTTAGACAGAATTAGCTAAAAATTTGAAATTTTTGTGAAATTTCTGACATTTTTGGACCCTGAATTGCCTTTTTATTCTGAAAATTCTGATTTTCAGGTTATTTTTCCAAAATTCGACGGTGGGCGGAGCTTAGAAATCCTTAAAGCATTTTCAGGCCTATTTTTTCAGATTTTCGATGGATTTAAACGGTTTTGAGATGTATTTTCAGACAAAAGTGCGAAAAATCGCGAAAAAAATTTGATAAAACAATGTAAATTACTTTAAAAAATCGAGAAAAATTGCCTAAAAACAATACAATTTTTTTTTGATTCTTCAAAAAAATTTCATTGTTTTTCGAATTTTTTTCTACAAAAATCGGAAGAATAGCAAAGAAAACTGCAAAAAAAGATAGAAATGATTGAAACATCGGGAAACATTGCTTTGAAAAAATCCGATTTTTCAATAAATTTCGTCACATTCGGCTTATTTTTGATACAAAAATCCCAAAAAACGCAAAAAACTGCTTAAAACATGATCTTCCAACGATTTTTCATGAT</canonical>
            <polymorphic>TTTTAGCTGTAATTCGTCACCCGAAAAAGCCAAATTCCGGAAATCGAAAATGCGCAATTGTGAGACTATCGACAGGAGCGGAAGTTTGTGCCTATATTCCCAACGTTGGACACAATTTACAAGAGCATTCACAAGTAGGATTTGACTCCTTATTTTTTGAGAAAAGACCCCTATTTTTGTAGGTACTGGTTAAAGGAGGACGTCGACGAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGTTTTTTTTTGTCAAAACTTCGATTTTTTTAGACAGAATTAGCTAAAAATTTGAAATTTTTGTRAAATTTCTGACATTTTTGGACCCTGAATTGCCTTTTTATTCTGAAAATTCTGATTTTCAGGTTATTTTTCCAAAATTCGACGGTGGGCGGAGCTTAGAAATCCTTAAAGCATTTTCAGGCCTATTTTTTCAGATTTTCGATGGATTTAAACGGTTTTGAGATGTATTTTCAGACAAAAGTGCGAAAAATCGCGAAAAAAATTTGATAAAACAATGTAAATTACTTTAAAAAATCGAGAAAAATTGCCTAAAAACAATACAATTTTTTTTTGATTCTTCAAAAAAATTTCATTGTTTTTCGAATTTTTTTCTACAAAAATCGGAAGAATAGCAAAGAAAACTGCAAAAAAAGATAGAAATGATTGAAACATCGGGAAACATTGCTTTGAAAAAATCCGATTTTTCAATAAATTTCGTCACATTCGGCTTATTTTTGATACAAAAATCCCAAAAAACGCAAAAAACTGCTTAAAACATGATCTTCCAACGATTTTTCATGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>261 237 108 96 85 82 43 28 22 19 19</canonical_bands>
                <polymorphic_bands>346 237 108 96 82 43 28 22 19 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTTCTCCGTTTATTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAAAATAACCTGAAAATCAGAA</pcr_primer_p2>
		<pcr_amplicon_size>225</pcr_amplicon_size>
		<canonical_amplicon>TTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGTTTTTTTTTGTCAAAACTTCGATTTTTTTAGACAGAATTAGCTAAAAATTTGAAATTTTTGTGAAATTTCTGACATTTTTGGACCCTGAATTGCCTTTTTATTCTGAAAATTCTGATTTTCAGGTTATTTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGTTTTTTTTTGTCAAAACTTCGATTTTTTTAGACAGAATTAGCTAAAAATTTGAAATTTTTGTRAAATTTCTGACATTTTTGGACCCTGAATTGCCTTTTTATTCTGAAAATTCTGATTTTCAGGTTATTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10587</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>191569</contig_pos>
        <strand></strand>
        <context>TTTTTAGACA[G/A]AATTAGCTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TATACTTGCTTTGCTGTTTTTTTTTGTCAAAACTTCGATTTTTTTAGACA</left_flank>
        <right_flank>AATTAGCTAAAAATTTGAAATTTTTGTGAAATTTCTGACATTTTTGGACC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAATTCCCGCCCCTAAAAATCGATACTTTTAGCTGTAATTCGTCACCCGAAAAAGCCAAATTCCGGAAATCGAAAATGCGCAATTGTGAGACTATCGACAGGAGCGGAAGTTTGTGCCTATATTCCCAACGTTGGACACAATTTACAAGAGCATTCACAAGTAGGATTTGACTCCTTATTTTTTGAGAAAAGACCCCTATTTTTGTAGGTACTGGTTAAAGGAGGACGTCGACGAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGTTTTTTTTTGTCAAAACTTCGATTTTTTTAGACAGAATTAGCTAAAAATTTGAAATTTTTGTGAAATTTCTGACATTTTTGGACCCTGAATTGCCTTTTTATTCTGAAAATTCTGATTTTCAGGTTATTTTTCCAAAATTCGACGGTGGGCGGAGCTTAGAAATCCTTAAAGCATTTTCAGGCCTATTTTTTCAGATTTTCGATGGATTTAAACGGTTTTGAGATGTATTTTCAGACAAAAGTGCGAAAAATCGCGAAAAAAATTTGATAAAACAATGTAAATTACTTTAAAAAATCGAGAAAAATTGCCTAAAAACAATACAATTTTTTTTTGATTCTTCAAAAAAATTTCATTGTTTTTCGAATTTTTTTCTACAAAAATCGGAAGAATAGCAAAGAAAACTGCAAAAAAAGATAGAAATGATTGAAACATCGGGAAACATTGCTTTGAAAAAATCCGATTTTTCAATAAATTTCGTCACATTCGGCTTATTTTTGATACAAAAATCCCAAAAAACGCAAAAAACTGCTTAAA</canonical>
            <polymorphic>TCTAATTCCCGCCCCTAAAAATCGATACTTTTAGCTGTAATTCGTCACCCGAAAAAGCCAAATTCCGGAAATCGAAAATGCGCAATTGTGAGACTATCGACAGGAGCGGAAGTTTGTGCCTATATTCCCAACGTTGGACACAATTTACAAGAGCATTCACAAGTAGGATTTGACTCCTTATTTTTTGAGAAAAGACCCCTATTTTTGTAGGTACTGGTTAAAGGAGGACGTCGACGAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGTTTTTTTTTGTCAAAACTTCGATTTTTTTAGACARAATTAGCTAAAAATTTGAAATTTTTGTGAAATTTCTGACATTTTTGGACCCTGAATTGCCTTTTTATTCTGAAAATTCTGATTTTCAGGTTATTTTTCCAAAATTCGACGGTGGGCGGAGCTTAGAAATCCTTAAAGCATTTTCAGGCCTATTTTTTCAGATTTTCGATGGATTTAAACGGTTTTGAGATGTATTTTCAGACAAAAGTGCGAAAAATCGCGAAAAAAATTTGATAAAACAATGTAAATTACTTTAAAAAATCGAGAAAAATTGCCTAAAAACAATACAATTTTTTTTTGATTCTTCAAAAAAATTTCATTGTTTTTCGAATTTTTTTCTACAAAAATCGGAAGAATAGCAAAGAAAACTGCAAAAAAAGATAGAAATGATTGAAACATCGGGAAACATTGCTTTGAAAAAATCCGATTTTTCAATAAATTTCGTCACATTCGGCTTATTTTTGATACAAAAATCCCAAAAAACGCAAAAAACTGCTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTAGTTTTTCTTCTTGTTCTTCTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCAGAATAAAAAGGCAATTC</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>AACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGTTTTTTTTTGTCAAAACTTCGATTTTTTTAGACAGAATTAGCTAAAAATTTGAAATTTTTGTGAAATTTCTGACATTTTTGGACCCTGAATTGCCTTTTTATTCTGAAA</canonical_amplicon>
		<polymorphic_amplicon>AACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGTTTTTTTTTGTCAAAACTTCGATTTTTTTAGACARAATTAGCTAAAAATTTGAAATTTTTGTGAAATTTCTGACATTTTTGGACCCTGAATTGCCTTTTTATTCTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10589</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>191442</contig_pos>
        <strand>+</strand>
        <context>TCTTYTRTTT[A/G]TTGTTCTCCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTT</left_flank>
        <right_flank>TTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTATGGGACAAAAATCGTATTGAAAATTTTCTGAAAAAATCGAAAAAATGCCTAAAAACACTGAAAATTTTTGATCAATTTTTCCGAAAATTTTGAAAAAAATTTCGGAAAAAAAATATTTTTTTTTCTAATTCCCGCCCCTAAAAATCGATACTTTTAGCTGTAATTCGTCACCCGAAAAAGCCAAATTCCGGAAATCGAAAATGCGCAATTGTGAGACTATCGACAGGAGCGGAAGTTTGTGCCTATATTCCCAACGTTGGACACAATTTACAAGAGCATTCACAAGTAGGATTTGACTCCTTATTTTTTGAGAAAAGACCCCTATTTTTGTAGGTACTGGTTAAAGGAGGACGTCGACGAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGTTTTTTTTTGTCAAAACTTCGATTTTTTTAGACAGAATTAGCTAAAAATTTGAAATTTTTGTGAAATTTCTGACATTTTTGGACCCTGAATTGCCTTTTTATTCTGAAAATTCTGATTTTCAGGTTATTTTTCCAAAATTCGACGGTGGGCGGAGCTTAGAAATCCTTAAAGCATTTTCAGGCCTATTTTTTCAGATTTTCGATGGATTTAAACGGTTTTGAGATGTATTTTCAGACAAAAGTGCGAAAAATCGCGAAAAAAATTTGATAAAACAATGTAAATTACTTTAAAAAATCGAGAAAAATTGCCTAAAAACAATACAATTTTTTTTTGATTCTTCAAAAAAATTTCATTGTTTTTCGAATTTTTTTCTACAAAAATCGGAAGAATAGCAAAGAAAACTGCAA</canonical>
            <polymorphic>AGTATGGGACAAAAATCGTATTGAAAATTTTCTGAAAAAATCGAAAAAATGCCTAAAAACACTGAAAATTTTTGATCAATTTTTCCGAAAATTTTGAAAAAAATTTCGGAAAAAAAATATTTTTTTTTCTAATTCCCGCCCCTAAAAATCGATACTTTTAGCTGTAATTCGTCACCCGAAAAAGCCAAATTCCGGAAATCGAAAATGCGCAATTGTGAGACTATCGACAGGAGCGGAAGTTTGTGCCTATATTCCCAACGTTGGACACAATTTACAAGAGCATTCACAAGTAGGATTTGACTCCTTATTTTTTGAGAAAAGACCCCTATTTTTGTAGGTACTGGTTAAAGGAGGACGTCGACGAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTRTTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGTTTTTTTTTGTCAAAACTTCGATTTTTTTAGACAGAATTAGCTAAAAATTTGAAATTTTTGTGAAATTTCTGACATTTTTGGACCCTGAATTGCCTTTTTATTCTGAAAATTCTGATTTTCAGGTTATTTTTCCAAAATTCGACGGTGGGCGGAGCTTAGAAATCCTTAAAGCATTTTCAGGCCTATTTTTTCAGATTTTCGATGGATTTAAACGGTTTTGAGATGTATTTTCAGACAAAAGTGCGAAAAATCGCGAAAAAAATTTGATAAAACAATGTAAATTACTTTAAAAAATCGAGAAAAATTGCCTAAAAACAATACAATTTTTTTTTGATTCTTCAAAAAAATTTCATTGTTTTTCGAATTTTTTTCTACAAAAATCGGAAGAATAGCAAAGAAAACTGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGACTTGATTTCGGTCAAA</pcr_primer_p1>
		<pcr_primer_p2>AGCAAAGCAAGTATAAAATATGG</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>GAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCT</canonical_amplicon>
		<polymorphic_amplicon>GAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTRTTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10590</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>191438</contig_pos>
        <strand>+</strand>
        <context>TTCTTCTTYT[A/G]TTTRTTGTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTT</left_flank>
        <right_flank>TTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAGTATGGGACAAAAATCGTATTGAAAATTTTCTGAAAAAATCGAAAAAATGCCTAAAAACACTGAAAATTTTTGATCAATTTTTCCGAAAATTTTGAAAAAAATTTCGGAAAAAAAATATTTTTTTTTCTAATTCCCGCCCCTAAAAATCGATACTTTTAGCTGTAATTCGTCACCCGAAAAAGCCAAATTCCGGAAATCGAAAATGCGCAATTGTGAGACTATCGACAGGAGCGGAAGTTTGTGCCTATATTCCCAACGTTGGACACAATTTACAAGAGCATTCACAAGTAGGATTTGACTCCTTATTTTTTGAGAAAAGACCCCTATTTTTGTAGGTACTGGTTAAAGGAGGACGTCGACGAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGTTTTTTTTTGTCAAAACTTCGATTTTTTTAGACAGAATTAGCTAAAAATTTGAAATTTTTGTGAAATTTCTGACATTTTTGGACCCTGAATTGCCTTTTTATTCTGAAAATTCTGATTTTCAGGTTATTTTTCCAAAATTCGACGGTGGGCGGAGCTTAGAAATCCTTAAAGCATTTTCAGGCCTATTTTTTCAGATTTTCGATGGATTTAAACGGTTTTGAGATGTATTTTCAGACAAAAGTGCGAAAAATCGCGAAAAAAATTTGATAAAACAATGTAAATTACTTTAAAAAATCGAGAAAAATTGCCTAAAAACAATACAATTTTTTTTTGATTCTTCAAAAAAATTTCATTGTTTTTCGAATTTTTTTCTACAAAAATCGGAAGAATAGCAAAGAAAACT</canonical>
            <polymorphic>GAAAAGTATGGGACAAAAATCGTATTGAAAATTTTCTGAAAAAATCGAAAAAATGCCTAAAAACACTGAAAATTTTTGATCAATTTTTCCGAAAATTTTGAAAAAAATTTCGGAAAAAAAATATTTTTTTTTCTAATTCCCGCCCCTAAAAATCGATACTTTTAGCTGTAATTCGTCACCCGAAAAAGCCAAATTCCGGAAATCGAAAATGCGCAATTGTGAGACTATCGACAGGAGCGGAAGTTTGTGCCTATATTCCCAACGTTGGACACAATTTACAAGAGCATTCACAAGTAGGATTTGACTCCTTATTTTTTGAGAAAAGACCCCTATTTTTGTAGGTACTGGTTAAAGGAGGACGTCGACGAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTRTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGTTTTTTTTTGTCAAAACTTCGATTTTTTTAGACAGAATTAGCTAAAAATTTGAAATTTTTGTGAAATTTCTGACATTTTTGGACCCTGAATTGCCTTTTTATTCTGAAAATTCTGATTTTCAGGTTATTTTTCCAAAATTCGACGGTGGGCGGAGCTTAGAAATCCTTAAAGCATTTTCAGGCCTATTTTTTCAGATTTTCGATGGATTTAAACGGTTTTGAGATGTATTTTCAGACAAAAGTGCGAAAAATCGCGAAAAAAATTTGATAAAACAATGTAAATTACTTTAAAAAATCGAGAAAAATTGCCTAAAAACAATACAATTTTTTTTTGATTCTTCAAAAAAATTTCATTGTTTTTCGAATTTTTTTCTACAAAAATCGGAAGAATAGCAAAGAAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGACTTGATTTCGGTCAAA</pcr_primer_p1>
		<pcr_primer_p2>AGCAAAGCAAGTATAAAATATGG</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>GAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCT</canonical_amplicon>
		<polymorphic_amplicon>GAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTRTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10591</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>191436</contig_pos>
        <strand>+</strand>
        <context>TGTTCTTCTT[C/T]TRTTTRTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTT</left_flank>
        <right_flank>TGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAAAAGTATGGGACAAAAATCGTATTGAAAATTTTCTGAAAAAATCGAAAAAATGCCTAAAAACACTGAAAATTTTTGATCAATTTTTCCGAAAATTTTGAAAAAAATTTCGGAAAAAAAATATTTTTTTTTCTAATTCCCGCCCCTAAAAATCGATACTTTTAGCTGTAATTCGTCACCCGAAAAAGCCAAATTCCGGAAATCGAAAATGCGCAATTGTGAGACTATCGACAGGAGCGGAAGTTTGTGCCTATATTCCCAACGTTGGACACAATTTACAAGAGCATTCACAAGTAGGATTTGACTCCTTATTTTTTGAGAAAAGACCCCTATTTTTGTAGGTACTGGTTAAAGGAGGACGTCGACGAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGTTTTTTTTTGTCAAAACTTCGATTTTTTTAGACAGAATTAGCTAAAAATTTGAAATTTTTGTGAAATTTCTGACATTTTTGGACCCTGAATTGCCTTTTTATTCTGAAAATTCTGATTTTCAGGTTATTTTTCCAAAATTCGACGGTGGGCGGAGCTTAGAAATCCTTAAAGCATTTTCAGGCCTATTTTTTCAGATTTTCGATGGATTTAAACGGTTTTGAGATGTATTTTCAGACAAAAGTGCGAAAAATCGCGAAAAAAATTTGATAAAACAATGTAAATTACTTTAAAAAATCGAGAAAAATTGCCTAAAAACAATACAATTTTTTTTTGATTCTTCAAAAAAATTTCATTGTTTTTCGAATTTTTTTCTACAAAAATCGGAAGAATAGCAAAGAAAA</canonical>
            <polymorphic>CTGAAAAGTATGGGACAAAAATCGTATTGAAAATTTTCTGAAAAAATCGAAAAAATGCCTAAAAACACTGAAAATTTTTGATCAATTTTTCCGAAAATTTTGAAAAAAATTTCGGAAAAAAAATATTTTTTTTTCTAATTCCCGCCCCTAAAAATCGATACTTTTAGCTGTAATTCGTCACCCGAAAAAGCCAAATTCCGGAAATCGAAAATGCGCAATTGTGAGACTATCGACAGGAGCGGAAGTTTGTGCCTATATTCCCAACGTTGGACACAATTTACAAGAGCATTCACAAGTAGGATTTGACTCCTTATTTTTTGAGAAAAGACCCCTATTTTTGTAGGTACTGGTTAAAGGAGGACGTCGACGAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTYTGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGTTTTTTTTTGTCAAAACTTCGATTTTTTTAGACAGAATTAGCTAAAAATTTGAAATTTTTGTGAAATTTCTGACATTTTTGGACCCTGAATTGCCTTTTTATTCTGAAAATTCTGATTTTCAGGTTATTTTTCCAAAATTCGACGGTGGGCGGAGCTTAGAAATCCTTAAAGCATTTTCAGGCCTATTTTTTCAGATTTTCGATGGATTTAAACGGTTTTGAGATGTATTTTCAGACAAAAGTGCGAAAAATCGCGAAAAAAATTTGATAAAACAATGTAAATTACTTTAAAAAATCGAGAAAAATTGCCTAAAAACAATACAATTTTTTTTTGATTCTTCAAAAAAATTTCATTGTTTTTCGAATTTTTTTCTACAAAAATCGGAAGAATAGCAAAGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGACTTGATTTCGGTCAAA</pcr_primer_p1>
		<pcr_primer_p2>AGCAAAGCAAGTATAAAATATGG</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>GAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCT</canonical_amplicon>
		<polymorphic_amplicon>GAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTYTGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10592</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>191390</contig_pos>
        <strand>+</strand>
        <context>AAGCTGGAAA[A/T]TCATAATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAA</left_flank>
        <right_flank>TCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGACAAGAGTCCGATCAGTGGATACAGCCATTTCAAGGGAATCGTGCTGAAAAGTATGGGACAAAAATCGTATTGAAAATTTTCTGAAAAAATCGAAAAAATGCCTAAAAACACTGAAAATTTTTGATCAATTTTTCCGAAAATTTTGAAAAAAATTTCGGAAAAAAAATATTTTTTTTTCTAATTCCCGCCCCTAAAAATCGATACTTTTAGCTGTAATTCGTCACCCGAAAAAGCCAAATTCCGGAAATCGAAAATGCGCAATTGTGAGACTATCGACAGGAGCGGAAGTTTGTGCCTATATTCCCAACGTTGGACACAATTTACAAGAGCATTCACAAGTAGGATTTGACTCCTTATTTTTTGAGAAAAGACCCCTATTTTTGTAGGTACTGGTTAAAGGAGGACGTCGACGAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGTTTTTTTTTGTCAAAACTTCGATTTTTTTAGACAGAATTAGCTAAAAATTTGAAATTTTTGTGAAATTTCTGACATTTTTGGACCCTGAATTGCCTTTTTATTCTGAAAATTCTGATTTTCAGGTTATTTTTCCAAAATTCGACGGTGGGCGGAGCTTAGAAATCCTTAAAGCATTTTCAGGCCTATTTTTTCAGATTTTCGATGGATTTAAACGGTTTTGAGATGTATTTTCAGACAAAAGTGCGAAAAATCGCGAAAAAAATTTGATAAAACAATGTAAATTACTTTAAAAAATCGAGAAAAATTGCCTAAAAACAATACAATTTTTTTTTGATTCTTCAAAAAAATTTCATTG</canonical>
            <polymorphic>GGACAAGAGTCCGATCAGTGGATACAGCCATTTCAAGGGAATCGTGCTGAAAAGTATGGGACAAAAATCGTATTGAAAATTTTCTGAAAAAATCGAAAAAATGCCTAAAAACACTGAAAATTTTTGATCAATTTTTCCGAAAATTTTGAAAAAAATTTCGGAAAAAAAATATTTTTTTTTCTAATTCCCGCCCCTAAAAATCGATACTTTTAGCTGTAATTCGTCACCCGAAAAAGCCAAATTCCGGAAATCGAAAATGCGCAATTGTGAGACTATCGACAGGAGCGGAAGTTTGTGCCTATATTCCCAACGTTGGACACAATTTACAAGAGCATTCACAAGTAGGATTTGACTCCTTATTTTTTGAGAAAAGACCCCTATTTTTGTAGGTACTGGTTAAAGGAGGACGTCGACGAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAAWTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGTTTTTTTTTGTCAAAACTTCGATTTTTTTAGACAGAATTAGCTAAAAATTTGAAATTTTTGTGAAATTTCTGACATTTTTGGACCCTGAATTGCCTTTTTATTCTGAAAATTCTGATTTTCAGGTTATTTTTCCAAAATTCGACGGTGGGCGGAGCTTAGAAATCCTTAAAGCATTTTCAGGCCTATTTTTTCAGATTTTCGATGGATTTAAACGGTTTTGAGATGTATTTTCAGACAAAAGTGCGAAAAATCGCGAAAAAAATTTGATAAAACAATGTAAATTACTTTAAAAAATCGAGAAAAATTGCCTAAAAACAATACAATTTTTTTTTGATTCTTCAAAAAAATTTCATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>214 193 125 86 85 77 44 44 41 28 23 12 11 10 7</canonical_bands>
                <polymorphic_bands>237 214 125 86 85 77 44 41 28 23 12 11 10 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>133 125 100 77 75 58 44 41 35 29 28 24 24 23 23 22 20 19 19 12 12 11 11 11 10 7 7</canonical_bands>
                <polymorphic_bands>133 125 100 77 75 58 51 41 35 29 28 24 24 23 23 22 20 19 19 12 12 11 11 11 10 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACAAGAGCATTCACAAGTAGG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCAATAAACGGAGAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACAAGAGCATTCACAAGTAGGATTTGACTCCTTATTTTTTGAGAAAAGACCCCTATTTTTGTAGGTACTGGTTAAAGGAGGACGTCGACGAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TACAAGAGCATTCACAAGTAGGATTTGACTCCTTATTTTTTGAGAAAAGACCCCTATTTTTGTAGGTACTGGTTAAAGGAGGACGTCGACGAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAAWTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10593</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>200171</contig_pos>
        <strand>+</strand>
        <context>AAAGGAAATT[A/T]TTGGAATCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATAATTCTGCCTAATGAAATTCCTCGAAAAAATTCGCGAAAAAGGAAATT</left_flank>
        <right_flank>TTGGAATCAGAAATTAGAACATCGAATTAGTTGTGGAATGTTGTACTTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTAGTTGACAACTTTTAGATATCTTTCACAGGAAAATAGATATATGGGCTCAAAGTTGACGGTGTAAGGAACTTTCTATTAGAGGGAAGCCTGCAGTGGTCAAACGGGCGAAAAGATGACTCAAAACCAAAAGTTAGGGTGCCCTTCTATTACAAGTTTTATTATAGTAATTCGAATTCCCAAAATACCTTCCTAATTCTCTAAACTAACATAATAATCTCTGACCACTTCCATTTCAGAGGGGTGTTCCTCAGATAATTAGTCATTTGAAGGAATTCCGATCATTTCTTTCTTCTTCGTGTCTCTATTCCTATTCGCTTGTCATCATCAATTACATGTTTTTTTGTTCTCAGTTCCCCTCCCTTTTCCAACCCATTACATATTGCGCTTCTTCACATTTTTGCCCTTTTCTATTTCTTCTTCCGGTCCTCCTCCTCATCTGTTTTATAATTCTGCCTAATGAAATTCCTCGAAAAAATTCGCGAAAAAGGAAATTATTGGAATCAGAAATTAGAACATCGAATTAGTTGTGGAATGTTGTACTTTTTGTGGGCGATCGTAAAACTGAATAGACTATCAGTTTCTTTTTTTTGTAGCATGATGACTTCTGTCTTCTGAATTCGTAGCATTTTTTGGGTGGGGCTTTTTTCTAGAGTTCACAAACCATACCTTTTTTGGCATATTTTAAATTTTGTTTTTAATTGAAAATGGTTAAATGTAAGTGTCTAAAAATCATTTAGTACTTCCCGGCTAGTTTGAAAATTTCAGAGACTTTTCTAGTTCTACAAATACCATTAAACCTGTAATAGAAAGGCAGCCCCAGTCGTCAGCTCTGAGCCAATATATCTCGCTTCCTTCGAATGATATCAAATAGTTGTTAACTATTAAATTGTTTATCATAATATAATAAACATTTTATCAGTTGGCAACTTTTTAATAGCTCTTATAGGAATCGAGATAATTGAGCTCAACGTTGACCGTACTTACTCTAATAGAA</canonical>
            <polymorphic>TTGTTAGTTGACAACTTTTAGATATCTTTCACAGGAAAATAGATATATGGGCTCAAAGTTGACGGTGTAAGGAACTTTCTATTAGAGGGAAGCCTGCAGTGGTCAAACGGGCGAAAAGATGACTCAAAACCAAAAGTTAGGGTGCCCTTCTATTACAAGTTTTATTATAGTAATTCGAATTCCCAAAATACCTTCCTAATTCTCTAAACTAACATAATAATCTCTGACCACTTCCATTTCAGAGGGGTGTTCCTCAGATAATTAGTCATTTGAAGGAATTCCGATCATTTCTTTCTTCTTCGTGTCTCTATTCCTATTCGCTTGTCATCATCAATTACATGTTTTTTTGTTCTCAGTTCCCCTCCCTTTTCCAACCCATTACATATTGCGCTTCTTCACATTTTTGCCCTTTTCTATTTCTTCTTCCGGTCCTCCTCCTCATCTGTTTTATAATTCTGCCTAATGAAATTCCTCGAAAAAATTCGCGAAAAAGGAAATTWTTGGAATCAGAAATTAGAACATCGAATTAGTTGTGGAATGTTGTACTTTTTGTGGGCGATCGTAAAACTGAATAGACTATCAGTTTCTTTTTTTTGTAGCATGATGACTTCTGTCTTCTGAATTCGTAGCATTTTTTGGGTGGGGCTTTTTTCTAGAGTTCACAAACCATACCTTTTTTGGCATATTTTAAATTTTGTTTTTAATTGAAAATGGTTAAATGTAAGTGTCTAAAAATCATTTAGTACTTCCCGGCTAGTTTGAAAATTTCAGAGACTTTTCTAGTTCTACAAATACCATTAAACCTGTAATAGAAAGGCAGCCCCAGTCGTCAGCTCTGAGCCAATATATCTCGCTTCCTTCGAATGATATCAAATAGTTGTTAACTATTAAATTGTTTATCATAATATAATAAACATTTTATCAGTTGGCAACTTTTTAATAGCTCTTATAGGAATCGAGATAATTGAGCTCAACGTTGACCGTACTTACTCTAATAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTCCAACCCATTACATATT</pcr_primer_p1>
		<pcr_primer_p2>GACAGAAGTCATCATGCTACAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTTCCAACCCATTACATATTGCGCTTCTTCACATTTTTGCCCTTTTCTATTTCTTCTTCCGGTCCTCCTCCTCATCTGTTTTATAATTCTGCCTAATGAAATTCCTCGAAAAAATTCGCGAAAAAGGAAATTATTGGAATCAGAAATTAGAACATCGAATTAGTTGTGGAATGTTGTACTTTTTGTGGGCGATCGTAAAACTGAATAGACTATCAGTTTCTTTTTTTTGTAGCATGATGACTTCTGTC</canonical_amplicon>
		<polymorphic_amplicon>CTTTTCCAACCCATTACATATTGCGCTTCTTCACATTTTTGCCCTTTTCTATTTCTTCTTCCGGTCCTCCTCCTCATCTGTTTTATAATTCTGCCTAATGAAATTCCTCGAAAAAATTCGCGAAAAAGGAAATTWTTGGAATCAGAAATTAGAACATCGAATTAGTTGTGGAATGTTGTACTTTTTGTGGGCGATCGTAAAACTGAATAGACTATCAGTTTCTTTTTTTTGTAGCATGATGACTTCTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10594</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>200375</contig_pos>
        <strand>+</strand>
        <context>TTTGTTTTTA[A/G]TTGAAAATRG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGAGTTCACAAACCATACCTTTTTTGGCATATTTTAAATTTTGTTTTTA</left_flank>
        <right_flank>TTGAAAATGGTTAAATGTAAGTGTCTAAAAATCATTTAGTACTTCCCGGC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAACTAACATAATAATCTCTGACCACTTCCATTTCAGAGGGGTGTTCCTCAGATAATTAGTCATTTGAAGGAATTCCGATCATTTCTTTCTTCTTCGTGTCTCTATTCCTATTCGCTTGTCATCATCAATTACATGTTTTTTTGTTCTCAGTTCCCCTCCCTTTTCCAACCCATTACATATTGCGCTTCTTCACATTTTTGCCCTTTTCTATTTCTTCTTCCGGTCCTCCTCCTCATCTGTTTTATAATTCTGCCTAATGAAATTCCTCGAAAAAATTCGCGAAAAAGGAAATTATTGGAATCAGAAATTAGAACATCGAATTAGTTGTGGAATGTTGTACTTTTTGTGGGCGATCGTAAAACTGAATAGACTATCAGTTTCTTTTTTTTGTAGCATGATGACTTCTGTCTTCTGAATTCGTAGCATTTTTTGGGTGGGGCTTTTTTCTAGAGTTCACAAACCATACCTTTTTTGGCATATTTTAAATTTTGTTTTTAATTGAAAATGGTTAAATGTAAGTGTCTAAAAATCATTTAGTACTTCCCGGCTAGTTTGAAAATTTCAGAGACTTTTCTAGTTCTACAAATACCATTAAACCTGTAATAGAAAGGCAGCCCCAGTCGTCAGCTCTGAGCCAATATATCTCGCTTCCTTCGAATGATATCAAATAGTTGTTAACTATTAAATTGTTTATCATAATATAATAAACATTTTATCAGTTGGCAACTTTTTAATAGCTCTTATAGGAATCGAGATAATTGAGCTCAACGTTGACCGTACTTACTCTAATAGAAGTTCACCCAAACCTTCAACTTGGAGCTCAACTATCTCATTTCTTGTAAGAGATATCAAAAGGTTGTCAACTGATAAAATGTTTATCATAATATCACAAATATTTTATTAGTTAAAAGCTTCTCAATAGCTCCTATAGGAATCGAGATAATTGAGCTCAAAGTTAAGAGTTAGGGCCGCCCTCTACCGTACTTGCTCTAATAGAA</canonical>
            <polymorphic>TAAACTAACATAATAATCTCTGACCACTTCCATTTCAGAGGGGTGTTCCTCAGATAATTAGTCATTTGAAGGAATTCCGATCATTTCTTTCTTCTTCGTGTCTCTATTCCTATTCGCTTGTCATCATCAATTACATGTTTTTTTGTTCTCAGTTCCCCTCCCTTTTCCAACCCATTACATATTGCGCTTCTTCACATTTTTGCCCTTTTCTATTTCTTCTTCCGGTCCTCCTCCTCATCTGTTTTATAATTCTGCCTAATGAAATTCCTCGAAAAAATTCGCGAAAAAGGAAATTATTGGAATCAGAAATTAGAACATCGAATTAGTTGTGGAATGTTGTACTTTTTGTGGGCGATCGTAAAACTGAATAGACTATCAGTTTCTTTTTTTTGTAGCATGATGACTTCTGTCTTCTGAATTCGTAGCATTTTTTGGGTGGGGCTTTTTTCTAGAGTTCACAAACCATACCTTTTTTGGCATATTTTAAATTTTGTTTTTARTTGAAAATGGTTAAATGTAAGTGTCTAAAAATCATTTAGTACTTCCCGGCTAGTTTGAAAATTTCAGAGACTTTTCTAGTTCTACAAATACCATTAAACCTGTAATAGAAAGGCAGCCCCAGTCGTCAGCTCTGAGCCAATATATCTCGCTTCCTTCGAATGATATCAAATAGTTGTTAACTATTAAATTGTTTATCATAATATAATAAACATTTTATCAGTTGGCAACTTTTTAATAGCTCTTATAGGAATCGAGATAATTGAGCTCAACGTTGACCGTACTTACTCTAATAGAAGTTCACCCAAACCTTCAACTTGGAGCTCAACTATCTCATTTCTTGTAAGAGATATCAAAAGGTTGTCAACTGATAAAATGTTTATCATAATATCACAAATATTTTATTAGTTAAAAGCTTCTCAATAGCTCCTATAGGAATCGAGATAATTGAGCTCAAAGTTAAGAGTTAGGGCCGCCCTCTACCGTACTTGCTCTAATAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>484 174 83 83 51 49 42 14 13 7</canonical_bands>
                <polymorphic_bands>484 174 83 83 51 49 42 27 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>185 127 119 96 72 70 61 57 56 55 17 16 16 15 13 13 12</canonical_bands>
                <polymorphic_bands>185 127 119 96 73 72 70 57 56 55 17 16 16 15 13 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGATCGTAAAACTGAATAGAC</pcr_primer_p1>
		<pcr_primer_p2>TTTGTAGAACTAGAAAAGTCTCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GCGATCGTAAAACTGAATAGACTATCAGTTTCTTTTTTTTGTAGCATGATGACTTCTGTCTTCTGAATTCGTAGCATTTTTTGGGTGGGGCTTTTTTCTAGAGTTCACAAACCATACCTTTTTTGGCATATTTTAAATTTTGTTTTTAATTGAAAATGGTTAAATGTAAGTGTCTAAAAATCATTTAGTACTTCCCGGCTAGTTTGAAAATTTCAGAGACTTTTCTAGTTCTACAAA</canonical_amplicon>
		<polymorphic_amplicon>GCGATCGTAAAACTGAATAGACTATCAGTTTCTTTTTTTTGTAGCATGATGACTTCTGTCTTCTGAATTCGTAGCATTTTTTGGGTGGGGCTTTTTTCTAGAGTTCACAAACCATACCTTTTTTGGCATATTTTAAATTTTGTTTTTARTTGAAAATGGTTAAATGTAAGTGTCTAAAAATCATTTAGTACTTCCCGGCTAGTTTGAAAATTTCAGAGACTTTTCTAGTTCTACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10595</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>200384</contig_pos>
        <strand>+</strand>
        <context>ARTTGAAAAT[A/G]GTTAAMTGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAACCATACCTTTTTTGGCATATTTTAAATTTTGTTTTTAATTGAAAAT</left_flank>
        <right_flank>GTTAAATGTAAGTGTCTAAAAATCATTTAGTACTTCCCGGCTAGTTTGAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAATAATCTCTGACCACTTCCATTTCAGAGGGGTGTTCCTCAGATAATTAGTCATTTGAAGGAATTCCGATCATTTCTTTCTTCTTCGTGTCTCTATTCCTATTCGCTTGTCATCATCAATTACATGTTTTTTTGTTCTCAGTTCCCCTCCCTTTTCCAACCCATTACATATTGCGCTTCTTCACATTTTTGCCCTTTTCTATTTCTTCTTCCGGTCCTCCTCCTCATCTGTTTTATAATTCTGCCTAATGAAATTCCTCGAAAAAATTCGCGAAAAAGGAAATTATTGGAATCAGAAATTAGAACATCGAATTAGTTGTGGAATGTTGTACTTTTTGTGGGCGATCGTAAAACTGAATAGACTATCAGTTTCTTTTTTTTGTAGCATGATGACTTCTGTCTTCTGAATTCGTAGCATTTTTTGGGTGGGGCTTTTTTCTAGAGTTCACAAACCATACCTTTTTTGGCATATTTTAAATTTTGTTTTTAATTGAAAATGGTTAAATGTAAGTGTCTAAAAATCATTTAGTACTTCCCGGCTAGTTTGAAAATTTCAGAGACTTTTCTAGTTCTACAAATACCATTAAACCTGTAATAGAAAGGCAGCCCCAGTCGTCAGCTCTGAGCCAATATATCTCGCTTCCTTCGAATGATATCAAATAGTTGTTAACTATTAAATTGTTTATCATAATATAATAAACATTTTATCAGTTGGCAACTTTTTAATAGCTCTTATAGGAATCGAGATAATTGAGCTCAACGTTGACCGTACTTACTCTAATAGAAGTTCACCCAAACCTTCAACTTGGAGCTCAACTATCTCATTTCTTGTAAGAGATATCAAAAGGTTGTCAACTGATAAAATGTTTATCATAATATCACAAATATTTTATTAGTTAAAAGCTTCTCAATAGCTCCTATAGGAATCGAGATAATTGAGCTCAAAGTTAAGAGTTAGGGCCGCCCTCTACCGTACTTGCTCTAATAGAAGCCCACTCA</canonical>
            <polymorphic>ATAATAATCTCTGACCACTTCCATTTCAGAGGGGTGTTCCTCAGATAATTAGTCATTTGAAGGAATTCCGATCATTTCTTTCTTCTTCGTGTCTCTATTCCTATTCGCTTGTCATCATCAATTACATGTTTTTTTGTTCTCAGTTCCCCTCCCTTTTCCAACCCATTACATATTGCGCTTCTTCACATTTTTGCCCTTTTCTATTTCTTCTTCCGGTCCTCCTCCTCATCTGTTTTATAATTCTGCCTAATGAAATTCCTCGAAAAAATTCGCGAAAAAGGAAATTATTGGAATCAGAAATTAGAACATCGAATTAGTTGTGGAATGTTGTACTTTTTGTGGGCGATCGTAAAACTGAATAGACTATCAGTTTCTTTTTTTTGTAGCATGATGACTTCTGTCTTCTGAATTCGTAGCATTTTTTGGGTGGGGCTTTTTTCTAGAGTTCACAAACCATACCTTTTTTGGCATATTTTAAATTTTGTTTTTAATTGAAAATRGTTAAATGTAAGTGTCTAAAAATCATTTAGTACTTCCCGGCTAGTTTGAAAATTTCAGAGACTTTTCTAGTTCTACAAATACCATTAAACCTGTAATAGAAAGGCAGCCCCAGTCGTCAGCTCTGAGCCAATATATCTCGCTTCCTTCGAATGATATCAAATAGTTGTTAACTATTAAATTGTTTATCATAATATAATAAACATTTTATCAGTTGGCAACTTTTTAATAGCTCTTATAGGAATCGAGATAATTGAGCTCAACGTTGACCGTACTTACTCTAATAGAAGTTCACCCAAACCTTCAACTTGGAGCTCAACTATCTCATTTCTTGTAAGAGATATCAAAAGGTTGTCAACTGATAAAATGTTTATCATAATATCACAAATATTTTATTAGTTAAAAGCTTCTCAATAGCTCCTATAGGAATCGAGATAATTGAGCTCAAAGTTAAGAGTTAGGGCCGCCCTCTACCGTACTTGCTCTAATAGAAGCCCACTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGATCGTAAAACTGAATAGAC</pcr_primer_p1>
		<pcr_primer_p2>TTTGTAGAACTAGAAAAGTCTCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GCGATCGTAAAACTGAATAGACTATCAGTTTCTTTTTTTTGTAGCATGATGACTTCTGTCTTCTGAATTCGTAGCATTTTTTGGGTGGGGCTTTTTTCTAGAGTTCACAAACCATACCTTTTTTGGCATATTTTAAATTTTGTTTTTAATTGAAAATGGTTAAATGTAAGTGTCTAAAAATCATTTAGTACTTCCCGGCTAGTTTGAAAATTTCAGAGACTTTTCTAGTTCTACAAA</canonical_amplicon>
		<polymorphic_amplicon>GCGATCGTAAAACTGAATAGACTATCAGTTTCTTTTTTTTGTAGCATGATGACTTCTGTCTTCTGAATTCGTAGCATTTTTTGGGTGGGGCTTTTTTCTAGAGTTCACAAACCATACCTTTTTTGGCATATTTTAAATTTTGTTTTTAATTGAAAATRGTTAAATGTAAGTGTCTAAAAATCATTTAGTACTTCCCGGCTAGTTTGAAAATTTCAGAGACTTTTCTAGTTCTACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10596</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>200390</contig_pos>
        <strand>+</strand>
        <context>AAATRGTTAA[A/C]TGTAAGTGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATACCTTTTTTGGCATATTTTAAATTTTGTTTTTAATTGAAAATGGTTAA</left_flank>
        <right_flank>TGTAAGTGTCTAAAAATCATTTAGTACTTCCCGGCTAGTTTGAAAATTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTCTGACCACTTCCATTTCAGAGGGGTGTTCCTCAGATAATTAGTCATTTGAAGGAATTCCGATCATTTCTTTCTTCTTCGTGTCTCTATTCCTATTCGCTTGTCATCATCAATTACATGTTTTTTTGTTCTCAGTTCCCCTCCCTTTTCCAACCCATTACATATTGCGCTTCTTCACATTTTTGCCCTTTTCTATTTCTTCTTCCGGTCCTCCTCCTCATCTGTTTTATAATTCTGCCTAATGAAATTCCTCGAAAAAATTCGCGAAAAAGGAAATTATTGGAATCAGAAATTAGAACATCGAATTAGTTGTGGAATGTTGTACTTTTTGTGGGCGATCGTAAAACTGAATAGACTATCAGTTTCTTTTTTTTGTAGCATGATGACTTCTGTCTTCTGAATTCGTAGCATTTTTTGGGTGGGGCTTTTTTCTAGAGTTCACAAACCATACCTTTTTTGGCATATTTTAAATTTTGTTTTTAATTGAAAATGGTTAAATGTAAGTGTCTAAAAATCATTTAGTACTTCCCGGCTAGTTTGAAAATTTCAGAGACTTTTCTAGTTCTACAAATACCATTAAACCTGTAATAGAAAGGCAGCCCCAGTCGTCAGCTCTGAGCCAATATATCTCGCTTCCTTCGAATGATATCAAATAGTTGTTAACTATTAAATTGTTTATCATAATATAATAAACATTTTATCAGTTGGCAACTTTTTAATAGCTCTTATAGGAATCGAGATAATTGAGCTCAACGTTGACCGTACTTACTCTAATAGAAGTTCACCCAAACCTTCAACTTGGAGCTCAACTATCTCATTTCTTGTAAGAGATATCAAAAGGTTGTCAACTGATAAAATGTTTATCATAATATCACAAATATTTTATTAGTTAAAAGCTTCTCAATAGCTCCTATAGGAATCGAGATAATTGAGCTCAAAGTTAAGAGTTAGGGCCGCCCTCTACCGTACTTGCTCTAATAGAAGCCCACTCAAACCGT</canonical>
            <polymorphic>ATCTCTGACCACTTCCATTTCAGAGGGGTGTTCCTCAGATAATTAGTCATTTGAAGGAATTCCGATCATTTCTTTCTTCTTCGTGTCTCTATTCCTATTCGCTTGTCATCATCAATTACATGTTTTTTTGTTCTCAGTTCCCCTCCCTTTTCCAACCCATTACATATTGCGCTTCTTCACATTTTTGCCCTTTTCTATTTCTTCTTCCGGTCCTCCTCCTCATCTGTTTTATAATTCTGCCTAATGAAATTCCTCGAAAAAATTCGCGAAAAAGGAAATTATTGGAATCAGAAATTAGAACATCGAATTAGTTGTGGAATGTTGTACTTTTTGTGGGCGATCGTAAAACTGAATAGACTATCAGTTTCTTTTTTTTGTAGCATGATGACTTCTGTCTTCTGAATTCGTAGCATTTTTTGGGTGGGGCTTTTTTCTAGAGTTCACAAACCATACCTTTTTTGGCATATTTTAAATTTTGTTTTTAATTGAAAATGGTTAAMTGTAAGTGTCTAAAAATCATTTAGTACTTCCCGGCTAGTTTGAAAATTTCAGAGACTTTTCTAGTTCTACAAATACCATTAAACCTGTAATAGAAAGGCAGCCCCAGTCGTCAGCTCTGAGCCAATATATCTCGCTTCCTTCGAATGATATCAAATAGTTGTTAACTATTAAATTGTTTATCATAATATAATAAACATTTTATCAGTTGGCAACTTTTTAATAGCTCTTATAGGAATCGAGATAATTGAGCTCAACGTTGACCGTACTTACTCTAATAGAAGTTCACCCAAACCTTCAACTTGGAGCTCAACTATCTCATTTCTTGTAAGAGATATCAAAAGGTTGTCAACTGATAAAATGTTTATCATAATATCACAAATATTTTATTAGTTAAAAGCTTCTCAATAGCTCCTATAGGAATCGAGATAATTGAGCTCAAAGTTAAGAGTTAGGGCCGCCCTCTACCGTACTTGCTCTAATAGAAGCCCACTCAAACCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGATCGTAAAACTGAATAGAC</pcr_primer_p1>
		<pcr_primer_p2>TTTGTAGAACTAGAAAAGTCTCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GCGATCGTAAAACTGAATAGACTATCAGTTTCTTTTTTTTGTAGCATGATGACTTCTGTCTTCTGAATTCGTAGCATTTTTTGGGTGGGGCTTTTTTCTAGAGTTCACAAACCATACCTTTTTTGGCATATTTTAAATTTTGTTTTTAATTGAAAATGGTTAAATGTAAGTGTCTAAAAATCATTTAGTACTTCCCGGCTAGTTTGAAAATTTCAGAGACTTTTCTAGTTCTACAAA</canonical_amplicon>
		<polymorphic_amplicon>GCGATCGTAAAACTGAATAGACTATCAGTTTCTTTTTTTTGTAGCATGATGACTTCTGTCTTCTGAATTCGTAGCATTTTTTGGGTGGGGCTTTTTTCTAGAGTTCACAAACCATACCTTTTTTGGCATATTTTAAATTTTGTTTTTAATTGAAAATGGTTAAMTGTAAGTGTCTAAAAATCATTTAGTACTTCCCGGCTAGTTTGAAAATTTCAGAGACTTTTCTAGTTCTACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10597</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>200414</contig_pos>
        <strand>+</strand>
        <context>AAATCATTTA[A/G]TACTTCCCGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGTTTTTAATTGAAAATGGTTAAATGTAAGTGTCTAAAAATCATTTA</left_flank>
        <right_flank>TACTTCCCGGCTAGTTTGAAAATTTCAGAGACTTTTCTAGTTCTACAAAT</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGGTGTTCCTCAGATAATTAGTCATTTGAAGGAATTCCGATCATTTCTTTCTTCTTCGTGTCTCTATTCCTATTCGCTTGTCATCATCAATTACATGTTTTTTTGTTCTCAGTTCCCCTCCCTTTTCCAACCCATTACATATTGCGCTTCTTCACATTTTTGCCCTTTTCTATTTCTTCTTCCGGTCCTCCTCCTCATCTGTTTTATAATTCTGCCTAATGAAATTCCTCGAAAAAATTCGCGAAAAAGGAAATTATTGGAATCAGAAATTAGAACATCGAATTAGTTGTGGAATGTTGTACTTTTTGTGGGCGATCGTAAAACTGAATAGACTATCAGTTTCTTTTTTTTGTAGCATGATGACTTCTGTCTTCTGAATTCGTAGCATTTTTTGGGTGGGGCTTTTTTCTAGAGTTCACAAACCATACCTTTTTTGGCATATTTTAAATTTTGTTTTTAATTGAAAATGGTTAAATGTAAGTGTCTAAAAATCATTTAGTACTTCCCGGCTAGTTTGAAAATTTCAGAGACTTTTCTAGTTCTACAAATACCATTAAACCTGTAATAGAAAGGCAGCCCCAGTCGTCAGCTCTGAGCCAATATATCTCGCTTCCTTCGAATGATATCAAATAGTTGTTAACTATTAAATTGTTTATCATAATATAATAAACATTTTATCAGTTGGCAACTTTTTAATAGCTCTTATAGGAATCGAGATAATTGAGCTCAACGTTGACCGTACTTACTCTAATAGAAGTTCACCCAAACCTTCAACTTGGAGCTCAACTATCTCATTTCTTGTAAGAGATATCAAAAGGTTGTCAACTGATAAAATGTTTATCATAATATCACAAATATTTTATTAGTTAAAAGCTTCTCAATAGCTCCTATAGGAATCGAGATAATTGAGCTCAAAGTTAAGAGTTAGGGCCGCCCTCTACCGTACTTGCTCTAATAGAAGCCCACTCAAACCGTCAATCTTAAGCTTATATATCTTAG</canonical>
            <polymorphic>GGGGTGTTCCTCAGATAATTAGTCATTTGAAGGAATTCCGATCATTTCTTTCTTCTTCGTGTCTCTATTCCTATTCGCTTGTCATCATCAATTACATGTTTTTTTGTTCTCAGTTCCCCTCCCTTTTCCAACCCATTACATATTGCGCTTCTTCACATTTTTGCCCTTTTCTATTTCTTCTTCCGGTCCTCCTCCTCATCTGTTTTATAATTCTGCCTAATGAAATTCCTCGAAAAAATTCGCGAAAAAGGAAATTATTGGAATCAGAAATTAGAACATCGAATTAGTTGTGGAATGTTGTACTTTTTGTGGGCGATCGTAAAACTGAATAGACTATCAGTTTCTTTTTTTTGTAGCATGATGACTTCTGTCTTCTGAATTCGTAGCATTTTTTGGGTGGGGCTTTTTTCTAGAGTTCACAAACCATACCTTTTTTGGCATATTTTAAATTTTGTTTTTAATTGAAAATGGTTAAATGTAAGTGTCTAAAAATCATTTARTACTTCCCGGCTAGTTTGAAAATTTCAGAGACTTTTCTAGTTCTACAAATACCATTAAACCTGTAATAGAAAGGCAGCCCCAGTCGTCAGCTCTGAGCCAATATATCTCGCTTCCTTCGAATGATATCAAATAGTTGTTAACTATTAAATTGTTTATCATAATATAATAAACATTTTATCAGTTGGCAACTTTTTAATAGCTCTTATAGGAATCGAGATAATTGAGCTCAACGTTGACCGTACTTACTCTAATAGAAGTTCACCCAAACCTTCAACTTGGAGCTCAACTATCTCATTTCTTGTAAGAGATATCAAAAGGTTGTCAACTGATAAAATGTTTATCATAATATCACAAATATTTTATTAGTTAAAAGCTTCTCAATAGCTCCTATAGGAATCGAGATAATTGAGCTCAAAGTTAAGAGTTAGGGCCGCCCTCTACCGTACTTGCTCTAATAGAAGCCCACTCAAACCGTCAATCTTAAGCTTATATATCTTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGTACT</site>
                <isoschizomers>
                    <enzyme>Acc113I</enzyme>
                    <enzyme>ScaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>301 240 204 200 55</canonical_bands>
                <polymorphic_bands>440 301 204 55</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>501 299 200</canonical_bands>
                <polymorphic_bands>701 299</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTCACAAACCATACCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CACATTCATGATGGTTTTCTATT</pcr_primer_p2>
		<pcr_amplicon_size>846</pcr_amplicon_size>
		<canonical_amplicon>AGTTCACAAACCATACCTTTTTTGGCATATTTTAAATTTTGTTTTTAATTGAAAATGGTTAAATGTAAGTGTCTAAAAATCATTTAGTACTTCCCGGCTAGTTTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>AGTTCACAAACCATACCTTTTTTGGCATATTTTAAATTTTGTTTTTAATTGAAAATGGTTAAATGTAAGTGTCTAAAAATCATTTARTACTTCCCGGCTAGTTTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10598</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>200432</contig_pos>
        <strand>+</strand>
        <context>CGGCTARTTT[G/T]AAAATTTCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGGTTAAATGTAAGTGTCTAAAAATCATTTAGTACTTCCCGGCTAGTTT</left_flank>
        <right_flank>AAAATTTCAGAGACTTTTCTAGTTCTACAAATACCATTAAACCTGTAATA</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGTCATTTGAAGGAATTCCGATCATTTCTTTCTTCTTCGTGTCTCTATTCCTATTCGCTTGTCATCATCAATTACATGTTTTTTTGTTCTCAGTTCCCCTCCCTTTTCCAACCCATTACATATTGCGCTTCTTCACATTTTTGCCCTTTTCTATTTCTTCTTCCGGTCCTCCTCCTCATCTGTTTTATAATTCTGCCTAATGAAATTCCTCGAAAAAATTCGCGAAAAAGGAAATTATTGGAATCAGAAATTAGAACATCGAATTAGTTGTGGAATGTTGTACTTTTTGTGGGCGATCGTAAAACTGAATAGACTATCAGTTTCTTTTTTTTGTAGCATGATGACTTCTGTCTTCTGAATTCGTAGCATTTTTTGGGTGGGGCTTTTTTCTAGAGTTCACAAACCATACCTTTTTTGGCATATTTTAAATTTTGTTTTTAATTGAAAATGGTTAAATGTAAGTGTCTAAAAATCATTTAGTACTTCCCGGCTAGTTTGAAAATTTCAGAGACTTTTCTAGTTCTACAAATACCATTAAACCTGTAATAGAAAGGCAGCCCCAGTCGTCAGCTCTGAGCCAATATATCTCGCTTCCTTCGAATGATATCAAATAGTTGTTAACTATTAAATTGTTTATCATAATATAATAAACATTTTATCAGTTGGCAACTTTTTAATAGCTCTTATAGGAATCGAGATAATTGAGCTCAACGTTGACCGTACTTACTCTAATAGAAGTTCACCCAAACCTTCAACTTGGAGCTCAACTATCTCATTTCTTGTAAGAGATATCAAAAGGTTGTCAACTGATAAAATGTTTATCATAATATCACAAATATTTTATTAGTTAAAAGCTTCTCAATAGCTCCTATAGGAATCGAGATAATTGAGCTCAAAGTTAAGAGTTAGGGCCGCCCTCTACCGTACTTGCTCTAATAGAAGCCCACTCAAACCGTCAATCTTAAGCTTATATATCTTAGTTTCTGTAAGAGATATAA</canonical>
            <polymorphic>TTAGTCATTTGAAGGAATTCCGATCATTTCTTTCTTCTTCGTGTCTCTATTCCTATTCGCTTGTCATCATCAATTACATGTTTTTTTGTTCTCAGTTCCCCTCCCTTTTCCAACCCATTACATATTGCGCTTCTTCACATTTTTGCCCTTTTCTATTTCTTCTTCCGGTCCTCCTCCTCATCTGTTTTATAATTCTGCCTAATGAAATTCCTCGAAAAAATTCGCGAAAAAGGAAATTATTGGAATCAGAAATTAGAACATCGAATTAGTTGTGGAATGTTGTACTTTTTGTGGGCGATCGTAAAACTGAATAGACTATCAGTTTCTTTTTTTTGTAGCATGATGACTTCTGTCTTCTGAATTCGTAGCATTTTTTGGGTGGGGCTTTTTTCTAGAGTTCACAAACCATACCTTTTTTGGCATATTTTAAATTTTGTTTTTAATTGAAAATGGTTAAATGTAAGTGTCTAAAAATCATTTAGTACTTCCCGGCTAGTTTKAAAATTTCAGAGACTTTTCTAGTTCTACAAATACCATTAAACCTGTAATAGAAAGGCAGCCCCAGTCGTCAGCTCTGAGCCAATATATCTCGCTTCCTTCGAATGATATCAAATAGTTGTTAACTATTAAATTGTTTATCATAATATAATAAACATTTTATCAGTTGGCAACTTTTTAATAGCTCTTATAGGAATCGAGATAATTGAGCTCAACGTTGACCGTACTTACTCTAATAGAAGTTCACCCAAACCTTCAACTTGGAGCTCAACTATCTCATTTCTTGTAAGAGATATCAAAAGGTTGTCAACTGATAAAATGTTTATCATAATATCACAAATATTTTATTAGTTAAAAGCTTCTCAATAGCTCCTATAGGAATCGAGATAATTGAGCTCAAAGTTAAGAGTTAGGGCCGCCCTCTACCGTACTTGCTCTAATAGAAGCCCACTCAAACCGTCAATCTTAAGCTTATATATCTTAGTTTCTGTAAGAGATATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTCACAAACCATACCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CACATTCATGATGGTTTTCTATT</pcr_primer_p2>
		<pcr_amplicon_size>846</pcr_amplicon_size>
		<canonical_amplicon>AGTTCACAAACCATACCTTTTTTGGCATATTTTAAATTTTGTTTTTAATTGAAAATGGTTAAATGTAAGTGTCTAAAAATCATTTAGTACTTCCCGGCTAGTTTGAAAATTTCAGAGACTTTTCTAG</canonical_amplicon>
		<polymorphic_amplicon>AGTTCACAAACCATACCTTTTTTGGCATATTTTAAATTTTGTTTTTAATTGAAAATGGTTAAATGTAAGTGTCTAAAAATCATTTAGTACTTCCCGGCTAGTTTKAAAATTTCAGAGACTTTTCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10599</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>202400</contig_pos>
        <strand>+</strand>
        <context>TGTAAGTTAC[A/T]AATTCAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAAAAGTCGAAATCCCCAGTGTCATCGGGATATAACTCTTGTAAGTTAC</left_flank>
        <right_flank>AATTCAAATTTTGGGACTTAAAGGACCCGTTTGACTATTAGTGAGGATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCAGAATCTCCATGAATCTCTAAGTATAGACTCATCCGAATGCATTTCTAAGCATAGAGAGAAAACTATTTATATTCTTCGGCTTCTTTTTACTTTTTGTCCCATTCTGCTCTAGAATGTTCAATGTTCCGGGTTTCTGTACTCTCCGGTCCCAGGTACAAACCCAACAGCCAAGGGGAGCCAATTTTTGTGAGTTTTAGATGATAACCCCTTCAATTTGAGAAGTATGAACTTCCAAAAGCGAAACTTCCAGATGAACTAATCCTATCTGAAAACGATCGTCTTCGAAGTCGAGTTGAGGAGCTGGAGAAAATTGTGGTAGCGCAGAGAAATGAAATTGTGAGTTTTTCCATCTTTCAGCCATTATTCCAGTAATCCCATATCCAGGTTTTACTGCAAAGCTCGACAGTGGAAATTCTGCGGCGCTTGCAAAATTTGGAGGTTCAGGAAAAGTCGAAATCCCCAGTGTCATCGGGATATAACTCTTGTAAGTTACTAATTCAAATTTTGGGACTTAAAGGACCCGTTTGACTATTAGTGAGGATCTTTCTTAGTGAGGAAATTTCTTAGTGATGAAAAAAATCCTCCCGAGTGAGATCCTCCTTGATAAAGATATTTTAGTAATGATTTTTCTCAATAAGAATCATCCTTAGTGAGAATCTTTCTTAGTAAGGACATCGCCATGAGGAACAGATCAGGGGTACAGCGCCGATACCGGCTGACTATTAGTGATAATATTTCTTATTGAGAAAATTTCTTAGTGAGGGTGTTTAATCAAAATCCAACTTTCCAGTACCCCGCCGAATCTCCGGCTCCAAAAGTACCTACTCTGTGAGCCCATCCTCTCAACACCCCTCTTCTCTTCCACGTCAATCCCATTCCCAAAACTCCAAATCCATCTATATCAACGGAATGAGCAGCACCGAAGACGTCGCTCAGATGCCTCGTCGTCCTCCAACACGTGGCAGTGATATGGTCAATGTGTCCGTTGGAAAAT</canonical>
            <polymorphic>TCTTCAGAATCTCCATGAATCTCTAAGTATAGACTCATCCGAATGCATTTCTAAGCATAGAGAGAAAACTATTTATATTCTTCGGCTTCTTTTTACTTTTTGTCCCATTCTGCTCTAGAATGTTCAATGTTCCGGGTTTCTGTACTCTCCGGTCCCAGGTACAAACCCAACAGCCAAGGGGAGCCAATTTTTGTGAGTTTTAGATGATAACCCCTTCAATTTGAGAAGTATGAACTTCCAAAAGCGAAACTTCCAGATGAACTAATCCTATCTGAAAACGATCGTCTTCGAAGTCGAGTTGAGGAGCTGGAGAAAATTGTGGTAGCGCAGAGAAATGAAATTGTGAGTTTTTCCATCTTTCAGCCATTATTCCAGTAATCCCATATCCAGGTTTTACTGCAAAGCTCGACAGTGGAAATTCTGCGGCGCTTGCAAAATTTGGAGGTTCAGGAAAAGTCGAAATCCCCAGTGTCATCGGGATATAACTCTTGTAAGTTACWAATTCAAATTTTGGGACTTAAAGGACCCGTTTGACTATTAGTGAGGATCTTTCTTAGTGAGGAAATTTCTTAGTGATGAAAAAAATCCTCCCGAGTGAGATCCTCCTTGATAAAGATATTTTAGTAATGATTTTTCTCAATAAGAATCATCCTTAGTGAGAATCTTTCTTAGTAAGGACATCGCCATGAGGAACAGATCAGGGGTACAGCGCCGATACCGGCTGACTATTAGTGATAATATTTCTTATTGAGAAAATTTCTTAGTGAGGGTGTTTAATCAAAATCCAACTTTCCAGTACCCCGCCGAATCTCCGGCTCCAAAAGTACCTACTCTGTGAGCCCATCCTCTCAACACCCCTCTTCTCTTCCACGTCAATCCCATTCCCAAAACTCCAAATCCATCTATATCAACGGAATGAGCAGCACCGAAGACGTCGCTCAGATGCCTCGTCGTCCTCCAACACGTGGCAGTGATATGGTCAATGTGTCCGTTGGAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTCAGGAAAAGTCGAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATGGGCTCACAGAGTAGGTA</pcr_primer_p2>
		<pcr_amplicon_size>401</pcr_amplicon_size>
		<canonical_amplicon>GGTTCAGGAAAAGTCGAAATCCCCAGTGTCATCGGGATATAACTCTTGTAAGTTACTAATTCAAATTTTGGGACTTAAAGGACCCGTTTGACTATTAGTGAGGATCTTTCTTAGTGAGGAAATTTCTTAGTGATGAAAAAAATCCTCCCGAGTGAGATCCTCCTTGATAAAGATATTTTAGTAATGATTTTTCTCAATAAGAATCATCCTTAGTGAGAATCTTTCTTAGTAAGGACATCGCCATGAGGAACAGATCAGGGGTACAGCGCCGATACCGGCTGACTATTAGTGATAATATTTCTTATTGAGAAAATTTCTTAGTGAGGGTGTTTAATCAAAATCCAACTTTCCAGTACCCCGCCGAATCTCCGGCTCCAAAAGTACCTACTCTGTGAGCCCAT</canonical_amplicon>
		<polymorphic_amplicon>GGTTCAGGAAAAGTCGAAATCCCCAGTGTCATCGGGATATAACTCTTGTAAGTTACWAATTCAAATTTTGGGACTTAAAGGACCCGTTTGACTATTAGTGAGGATCTTTCTTAGTGAGGAAATTTCTTAGTGATGAAAAAAATCCTCCCGAGTGAGATCCTCCTTGATAAAGATATTTTAGTAATGATTTTTCTCAATAAGAATCATCCTTAGTGAGAATCTTTCTTAGTAAGGACATCGCCATGAGGAACAGATCAGGGGTACAGCGCCGATACCGGCTGACTATTAGTGATAATATTTCTTATTGAGAAAATTTCTTAGTGAGGGTGTTTAATCAAAATCCAACTTTCCAGTACCCCGCCGAATCTCCGGCTCCAAAAGTACCTACTCTGTGAGCCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10600</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>202332</contig_pos>
        <strand>+</strand>
        <context>TGCGGCGCTT[A/G]CAAAATTTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATATCCAGGTTTTACTGCAAAGCTCGACAGTGGAAATTCTGCGGCGCTT</left_flank>
        <right_flank>CAAAATTTGGAGGTTCAGGAAAAGTCGAAATCCCCAGTGTCATCGGGATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGTTTCAATTAAAGCTAAAAAGATAAAGAAGACGTTTCAAAAGGCGTCCTTTTCTTTCTAAAGCGTTCTTCAGAATCTCCATGAATCTCTAAGTATAGACTCATCCGAATGCATTTCTAAGCATAGAGAGAAAACTATTTATATTCTTCGGCTTCTTTTTACTTTTTGTCCCATTCTGCTCTAGAATGTTCAATGTTCCGGGTTTCTGTACTCTCCGGTCCCAGGTACAAACCCAACAGCCAAGGGGAGCCAATTTTTGTGAGTTTTAGATGATAACCCCTTCAATTTGAGAAGTATGAACTTCCAAAAGCGAAACTTCCAGATGAACTAATCCTATCTGAAAACGATCGTCTTCGAAGTCGAGTTGAGGAGCTGGAGAAAATTGTGGTAGCGCAGAGAAATGAAATTGTGAGTTTTTCCATCTTTCAGCCATTATTCCAGTAATCCCATATCCAGGTTTTACTGCAAAGCTCGACAGTGGAAATTCTGCGGCGCTTGCAAAATTTGGAGGTTCAGGAAAAGTCGAAATCCCCAGTGTCATCGGGATATAACTCTTGTAAGTTACTAATTCAAATTTTGGGACTTAAAGGACCCGTTTGACTATTAGTGAGGATCTTTCTTAGTGAGGAAATTTCTTAGTGATGAAAAAAATCCTCCCGAGTGAGATCCTCCTTGATAAAGATATTTTAGTAATGATTTTTCTCAATAAGAATCATCCTTAGTGAGAATCTTTCTTAGTAAGGACATCGCCATGAGGAACAGATCAGGGGTACAGCGCCGATACCGGCTGACTATTAGTGATAATATTTCTTATTGAGAAAATTTCTTAGTGAGGGTGTTTAATCAAAATCCAACTTTCCAGTACCCCGCCGAATCTCCGGCTCCAAAAGTACCTACTCTGTGAGCCCATCCTCTCAACACCCCTCTTCTCTTCCACGTCAATCCCATTCCCAAAACTCCAAATCCATCTATATCAACGGAATGAGCAGCACCGAAGA</canonical>
            <polymorphic>AAAGTTTCAATTAAAGCTAAAAAGATAAAGAAGACGTTTCAAAAGGCGTCCTTTTCTTTCTAAAGCGTTCTTCAGAATCTCCATGAATCTCTAAGTATAGACTCATCCGAATGCATTTCTAAGCATAGAGAGAAAACTATTTATATTCTTCGGCTTCTTTTTACTTTTTGTCCCATTCTGCTCTAGAATGTTCAATGTTCCGGGTTTCTGTACTCTCCGGTCCCAGGTACAAACCCAACAGCCAAGGGGAGCCAATTTTTGTGAGTTTTAGATGATAACCCCTTCAATTTGAGAAGTATGAACTTCCAAAAGCGAAACTTCCAGATGAACTAATCCTATCTGAAAACGATCGTCTTCGAAGTCGAGTTGAGGAGCTGGAGAAAATTGTGGTAGCGCAGAGAAATGAAATTGTGAGTTTTTCCATCTTTCAGCCATTATTCCAGTAATCCCATATCCAGGTTTTACTGCAAAGCTCGACAGTGGAAATTCTGCGGCGCTTRCAAAATTTGGAGGTTCAGGAAAAGTCGAAATCCCCAGTGTCATCGGGATATAACTCTTGTAAGTTACTAATTCAAATTTTGGGACTTAAAGGACCCGTTTGACTATTAGTGAGGATCTTTCTTAGTGAGGAAATTTCTTAGTGATGAAAAAAATCCTCCCGAGTGAGATCCTCCTTGATAAAGATATTTTAGTAATGATTTTTCTCAATAAGAATCATCCTTAGTGAGAATCTTTCTTAGTAAGGACATCGCCATGAGGAACAGATCAGGGGTACAGCGCCGATACCGGCTGACTATTAGTGATAATATTTCTTATTGAGAAAATTTCTTAGTGAGGGTGTTTAATCAAAATCCAACTTTCCAGTACCCCGCCGAATCTCCGGCTCCAAAAGTACCTACTCTGTGAGCCCATCCTCTCAACACCCCTCTTCTCTTCCACGTCAATCCCATTCCCAAAACTCCAAATCCATCTATATCAACGGAATGAGCAGCACCGAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 354 113 33</canonical_bands>
                <polymorphic_bands>533 354 113</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTTCCAGATGAACTAATCCT</pcr_primer_p1>
		<pcr_primer_p2>TTACAAGAGTTATATCCCGATGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAACTTCCAGATGAACTAATCCTATCTGAAAACGATCGTCTTCGAAGTCGAGTTGAGGAGCTGGAGAAAATTGTGGTAGCGCAGAGAAATGAAATTGTGAGTTTTTCCATCTTTCAGCCATTATTCCAGTAATCCCATATCCAGGTTTTACTGCAAAGCTCGACAGTGGAAATTCTGCGGCGCTTGCAAAATTTGGAGGTTCAGGAAAAGTCGAAATCCCCAGTGTCATCGGGATATAACTCTTGTAA</canonical_amplicon>
		<polymorphic_amplicon>AAACTTCCAGATGAACTAATCCTATCTGAAAACGATCGTCTTCGAAGTCGAGTTGAGGAGCTGGAGAAAATTGTGGTAGCGCAGAGAAATGAAATTGTGAGTTTTTCCATCTTTCAGCCATTATTCCAGTAATCCCATATCCAGGTTTTACTGCAAAGCTCGACAGTGGAAATTCTGCGGCGCTTRCAAAATTTGGAGGTTCAGGAAAAGTCGAAATCCCCAGTGTCATCGGGATATAACTCTTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10602</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>254787</contig_pos>
        <strand>+</strand>
        <context>TGTTCTATAT[C/G]TTTTCTTTKY</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAAAAGTACTAACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATAT</left_flank>
        <right_flank>TTTTCTTTGTCCAAATTTCGTAATAATCCTTTTCATGATGTCATATTTAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTTTGCAAGATATGAAAATTTTGTCAACTGATAAATTGTTTATCATAATACTGGCTATATTTTATCAGTTGATAGATTTTTGATATCTTTTGAAGGAACCGAGATAATTGAGCTCAAATTACGGTGTTCAATTTGACTGAAAACATTTTTTCAAGTCAATTTTGAGCTCAATTATCTTAGCTCCTTCAAAAGATATCTGAAATCTGTTCACTGATAAAAGATAGCTTATAATATGATAAACAATTCATCAGTGAACAAAGTTTTGATATCTTTCAAAGGAACCGAGATAATTGAGCTCAAAATTTTAAAGTGGGCTTCTAGAAGAGGATATATTGCTTATAAATTGCTTGATTGCTTCCTTTTCTCTACAGCAAACGACTTTTTTTCCATAAAAACGTTTTCCTTCTCTATTTTTCTTCTTTTCCTGTTAACTATATGTCAAAGTTTCAAAAGTACTAACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATATCTTTTCTTTGTCCAAATTTCGTAATAATCCTTTTCATGATGTCATATTTAGCGGAACGGAAATTTCTCCTATATTTTGGTGATTGATGTCTTTTAGGGGAATAATTTGAGACTTTTTTATAACTTCATAGCAGAAAAAATAGAAATTTGATATGTATTTTCCGGCGGGGTCTTCAAGAGACTGATAAGGAAATAGTAACCCTTGGTCTCTTCCGTAATAATACAAAAATTAAATAAAAAACTTTAAATTAGGACTATGGACCGGAAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCCCGTAGAAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAAAAAAGAAGGAGAATCTTCTGAAAAATTCTGAAATATTTTAGTTTTCCCTTTTTTTAAAGTTTAATTAAATTTCCACAAATTACACATCCTTTTTTAAAGCCGATTTATCTCGATTACTGTAAAAGCTATCAAAAATTTGTCAACTGATAAAATGTTC</canonical>
            <polymorphic>TCCTTTGCAAGATATGAAAATTTTGTCAACTGATAAATTGTTTATCATAATACTGGCTATATTTTATCAGTTGATAGATTTTTGATATCTTTTGAAGGAACCGAGATAATTGAGCTCAAATTACGGTGTTCAATTTGACTGAAAACATTTTTTCAAGTCAATTTTGAGCTCAATTATCTTAGCTCCTTCAAAAGATATCTGAAATCTGTTCACTGATAAAAGATAGCTTATAATATGATAAACAATTCATCAGTGAACAAAGTTTTGATATCTTTCAAAGGAACCGAGATAATTGAGCTCAAAATTTTAAAGTGGGCTTCTAGAAGAGGATATATTGCTTATAAATTGCTTGATTGCTTCCTTTTCTCTACAGCAAACGACTTTTTTTCCATAAAAACGTTTTCCTTCTCTATTTTTCTTCTTTTCCTGTTAACTATATGTCAAAGTTTCAAAAGTACTAACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATATSTTTTCTTTGTCCAAATTTCGTAATAATCCTTTTCATGATGTCATATTTAGCGGAACGGAAATTTCTCCTATATTTTGGTGATTGATGTCTTTTAGGGGAATAATTTGAGACTTTTTTATAACTTCATAGCAGAAAAAATAGAAATTTGATATGTATTTTCCGGCGGGGTCTTCAAGAGACTGATAAGGAAATAGTAACCCTTGGTCTCTTCCGTAATAATACAAAAATTAAATAAAAAACTTTAAATTAGGACTATGGACCGGAAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCCCGTAGAAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAAAAAAGAAGGAGAATCTTCTGAAAAATTCTGAAATATTTTAGTTTTCCCTTTTTTTAAAGTTTAATTAAATTTCCACAAATTACACATCCTTTTTTAAAGCCGATTTATCTCGATTACTGTAAAAGCTATCAAAAATTTGTCAACTGATAAAATGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCTACAGCAAACGACTTT</pcr_primer_p1>
		<pcr_primer_p2>AGTCTCAAATTATTCCCCTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCTACAGCAAACGACTTTTTTTCCATAAAAACGTTTTCCTTCTCTATTTTTCTTCTTTTCCTGTTAACTATATGTCAAAGTTTCAAAAGTACTAACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATATCTTTTCTTTGTCCAAATTTCGTAATAATCCTTTTCATGATGTCATATTTAGCGGAACGGAAATTTCTCCTATATTTTGGTGATTGATGTCTTTTAGGGGAATAATTTGAGACT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCTACAGCAAACGACTTTTTTTCCATAAAAACGTTTTCCTTCTCTATTTTTCTTCTTTTCCTGTTAACTATATGTCAAAGTTTCAAAAGTACTAACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATATSTTTTCTTTGTCCAAATTTCGTAATAATCCTTTTCATGATGTCATATTTAGCGGAACGGAAATTTCTCCTATATTTTGGTGATTGATGTCTTTTAGGGGAATAATTTGAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10603</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>254796</contig_pos>
        <strand>+</strand>
        <context>TSTTTTCTTT[G/T]YCCAAATTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATATCTTTTCTTT</left_flank>
        <right_flank>TCCAAATTTCGTAATAATCCTTTTCATGATGTCATATTTAGCGGAACGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATATGAAAATTTTGTCAACTGATAAATTGTTTATCATAATACTGGCTATATTTTATCAGTTGATAGATTTTTGATATCTTTTGAAGGAACCGAGATAATTGAGCTCAAATTACGGTGTTCAATTTGACTGAAAACATTTTTTCAAGTCAATTTTGAGCTCAATTATCTTAGCTCCTTCAAAAGATATCTGAAATCTGTTCACTGATAAAAGATAGCTTATAATATGATAAACAATTCATCAGTGAACAAAGTTTTGATATCTTTCAAAGGAACCGAGATAATTGAGCTCAAAATTTTAAAGTGGGCTTCTAGAAGAGGATATATTGCTTATAAATTGCTTGATTGCTTCCTTTTCTCTACAGCAAACGACTTTTTTTCCATAAAAACGTTTTCCTTCTCTATTTTTCTTCTTTTCCTGTTAACTATATGTCAAAGTTTCAAAAGTACTAACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATATCTTTTCTTTGTCCAAATTTCGTAATAATCCTTTTCATGATGTCATATTTAGCGGAACGGAAATTTCTCCTATATTTTGGTGATTGATGTCTTTTAGGGGAATAATTTGAGACTTTTTTATAACTTCATAGCAGAAAAAATAGAAATTTGATATGTATTTTCCGGCGGGGTCTTCAAGAGACTGATAAGGAAATAGTAACCCTTGGTCTCTTCCGTAATAATACAAAAATTAAATAAAAAACTTTAAATTAGGACTATGGACCGGAAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCCCGTAGAAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAAAAAAGAAGGAGAATCTTCTGAAAAATTCTGAAATATTTTAGTTTTCCCTTTTTTTAAAGTTTAATTAAATTTCCACAAATTACACATCCTTTTTTAAAGCCGATTTATCTCGATTACTGTAAAAGCTATCAAAAATTTGTCAACTGATAAAATGTTCCTGACATTA</canonical>
            <polymorphic>AGATATGAAAATTTTGTCAACTGATAAATTGTTTATCATAATACTGGCTATATTTTATCAGTTGATAGATTTTTGATATCTTTTGAAGGAACCGAGATAATTGAGCTCAAATTACGGTGTTCAATTTGACTGAAAACATTTTTTCAAGTCAATTTTGAGCTCAATTATCTTAGCTCCTTCAAAAGATATCTGAAATCTGTTCACTGATAAAAGATAGCTTATAATATGATAAACAATTCATCAGTGAACAAAGTTTTGATATCTTTCAAAGGAACCGAGATAATTGAGCTCAAAATTTTAAAGTGGGCTTCTAGAAGAGGATATATTGCTTATAAATTGCTTGATTGCTTCCTTTTCTCTACAGCAAACGACTTTTTTTCCATAAAAACGTTTTCCTTCTCTATTTTTCTTCTTTTCCTGTTAACTATATGTCAAAGTTTCAAAAGTACTAACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATATCTTTTCTTTKTCCAAATTTCGTAATAATCCTTTTCATGATGTCATATTTAGCGGAACGGAAATTTCTCCTATATTTTGGTGATTGATGTCTTTTAGGGGAATAATTTGAGACTTTTTTATAACTTCATAGCAGAAAAAATAGAAATTTGATATGTATTTTCCGGCGGGGTCTTCAAGAGACTGATAAGGAAATAGTAACCCTTGGTCTCTTCCGTAATAATACAAAAATTAAATAAAAAACTTTAAATTAGGACTATGGACCGGAAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCCCGTAGAAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAAAAAAGAAGGAGAATCTTCTGAAAAATTCTGAAATATTTTAGTTTTCCCTTTTTTTAAAGTTTAATTAAATTTCCACAAATTACACATCCTTTTTTAAAGCCGATTTATCTCGATTACTGTAAAAGCTATCAAAAATTTGTCAACTGATAAAATGTTCCTGACATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTAACCCGATATTGATATTTTG</pcr_primer_p1>
		<pcr_primer_p2>CCAAGGGTTACTATTTCCTTATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACTAACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATATCTTTTCTTTGTCCAAATTTCGTAATAATCCTTTTCATGATGTCATATTTAGCGGAACGGAAATTTCTCCTATATTTTGGTGATTGATGTCTTTTAGGGGAATAATTTGAGACTTTTTTATAACTTCATAGCAGAAAAAATAGAAATTTGATATGTATTTTCCGGCGGGGTCTTCAAGAGACTGATAAGGAAATAGTAACCCTTGG</canonical_amplicon>
		<polymorphic_amplicon>ACTAACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATATCTTTTCTTTKTCCAAATTTCGTAATAATCCTTTTCATGATGTCATATTTAGCGGAACGGAAATTTCTCCTATATTTTGGTGATTGATGTCTTTTAGGGGAATAATTTGAGACTTTTTTATAACTTCATAGCAGAAAAAATAGAAATTTGATATGTATTTTCCGGCGGGGTCTTCAAGAGACTGATAAGGAAATAGTAACCCTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10604</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>254797</contig_pos>
        <strand>+</strand>
        <context>STTTTCTTTK[C/T]CCAAATTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATATCTTTTCTTTG</left_flank>
        <right_flank>CCAAATTTCGTAATAATCCTTTTCATGATGTCATATTTAGCGGAACGGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATATGAAAATTTTGTCAACTGATAAATTGTTTATCATAATACTGGCTATATTTTATCAGTTGATAGATTTTTGATATCTTTTGAAGGAACCGAGATAATTGAGCTCAAATTACGGTGTTCAATTTGACTGAAAACATTTTTTCAAGTCAATTTTGAGCTCAATTATCTTAGCTCCTTCAAAAGATATCTGAAATCTGTTCACTGATAAAAGATAGCTTATAATATGATAAACAATTCATCAGTGAACAAAGTTTTGATATCTTTCAAAGGAACCGAGATAATTGAGCTCAAAATTTTAAAGTGGGCTTCTAGAAGAGGATATATTGCTTATAAATTGCTTGATTGCTTCCTTTTCTCTACAGCAAACGACTTTTTTTCCATAAAAACGTTTTCCTTCTCTATTTTTCTTCTTTTCCTGTTAACTATATGTCAAAGTTTCAAAAGTACTAACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATATCTTTTCTTTGTCCAAATTTCGTAATAATCCTTTTCATGATGTCATATTTAGCGGAACGGAAATTTCTCCTATATTTTGGTGATTGATGTCTTTTAGGGGAATAATTTGAGACTTTTTTATAACTTCATAGCAGAAAAAATAGAAATTTGATATGTATTTTCCGGCGGGGTCTTCAAGAGACTGATAAGGAAATAGTAACCCTTGGTCTCTTCCGTAATAATACAAAAATTAAATAAAAAACTTTAAATTAGGACTATGGACCGGAAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCCCGTAGAAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAAAAAAGAAGGAGAATCTTCTGAAAAATTCTGAAATATTTTAGTTTTCCCTTTTTTTAAAGTTTAATTAAATTTCCACAAATTACACATCCTTTTTTAAAGCCGATTTATCTCGATTACTGTAAAAGCTATCAAAAATTTGTCAACTGATAAAATGTTCCTGACATTAT</canonical>
            <polymorphic>GATATGAAAATTTTGTCAACTGATAAATTGTTTATCATAATACTGGCTATATTTTATCAGTTGATAGATTTTTGATATCTTTTGAAGGAACCGAGATAATTGAGCTCAAATTACGGTGTTCAATTTGACTGAAAACATTTTTTCAAGTCAATTTTGAGCTCAATTATCTTAGCTCCTTCAAAAGATATCTGAAATCTGTTCACTGATAAAAGATAGCTTATAATATGATAAACAATTCATCAGTGAACAAAGTTTTGATATCTTTCAAAGGAACCGAGATAATTGAGCTCAAAATTTTAAAGTGGGCTTCTAGAAGAGGATATATTGCTTATAAATTGCTTGATTGCTTCCTTTTCTCTACAGCAAACGACTTTTTTTCCATAAAAACGTTTTCCTTCTCTATTTTTCTTCTTTTCCTGTTAACTATATGTCAAAGTTTCAAAAGTACTAACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATATCTTTTCTTTGYCCAAATTTCGTAATAATCCTTTTCATGATGTCATATTTAGCGGAACGGAAATTTCTCCTATATTTTGGTGATTGATGTCTTTTAGGGGAATAATTTGAGACTTTTTTATAACTTCATAGCAGAAAAAATAGAAATTTGATATGTATTTTCCGGCGGGGTCTTCAAGAGACTGATAAGGAAATAGTAACCCTTGGTCTCTTCCGTAATAATACAAAAATTAAATAAAAAACTTTAAATTAGGACTATGGACCGGAAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCCCGTAGAAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAAAAAAGAAGGAGAATCTTCTGAAAAATTCTGAAATATTTTAGTTTTCCCTTTTTTTAAAGTTTAATTAAATTTCCACAAATTACACATCCTTTTTTAAAGCCGATTTATCTCGATTACTGTAAAAGCTATCAAAAATTTGTCAACTGATAAAATGTTCCTGACATTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTAACCCGATATTGATATTTTG</pcr_primer_p1>
		<pcr_primer_p2>CCAAGGGTTACTATTTCCTTATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACTAACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATATCTTTTCTTTGTCCAAATTTCGTAATAATCCTTTTCATGATGTCATATTTAGCGGAACGGAAATTTCTCCTATATTTTGGTGATTGATGTCTTTTAGGGGAATAATTTGAGACTTTTTTATAACTTCATAGCAGAAAAAATAGAAATTTGATATGTATTTTCCGGCGGGGTCTTCAAGAGACTGATAAGGAAATAGTAACCCTTGG</canonical_amplicon>
		<polymorphic_amplicon>ACTAACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATATCTTTTCTTTGYCCAAATTTCGTAATAATCCTTTTCATGATGTCATATTTAGCGGAACGGAAATTTCTCCTATATTTTGGTGATTGATGTCTTTTAGGGGAATAATTTGAGACTTTTTTATAACTTCATAGCAGAAAAAATAGAAATTTGATATGTATTTTCCGGCGGGGTCTTCAAGAGACTGATAAGGAAATAGTAACCCTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10605</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>254813</contig_pos>
        <strand>+</strand>
        <context>TTTCGTAATA[A/T]TCCTTTTCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGGTGGTTTTGGTGTTCTATATCTTTTCTTTGTCCAAATTTCGTAATA</left_flank>
        <right_flank>TCCTTTTCATGATGTCATATTTAGCGGAACGGAAATTTCTCCTATATTTT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACTGATAAATTGTTTATCATAATACTGGCTATATTTTATCAGTTGATAGATTTTTGATATCTTTTGAAGGAACCGAGATAATTGAGCTCAAATTACGGTGTTCAATTTGACTGAAAACATTTTTTCAAGTCAATTTTGAGCTCAATTATCTTAGCTCCTTCAAAAGATATCTGAAATCTGTTCACTGATAAAAGATAGCTTATAATATGATAAACAATTCATCAGTGAACAAAGTTTTGATATCTTTCAAAGGAACCGAGATAATTGAGCTCAAAATTTTAAAGTGGGCTTCTAGAAGAGGATATATTGCTTATAAATTGCTTGATTGCTTCCTTTTCTCTACAGCAAACGACTTTTTTTCCATAAAAACGTTTTCCTTCTCTATTTTTCTTCTTTTCCTGTTAACTATATGTCAAAGTTTCAAAAGTACTAACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATATCTTTTCTTTGTCCAAATTTCGTAATAATCCTTTTCATGATGTCATATTTAGCGGAACGGAAATTTCTCCTATATTTTGGTGATTGATGTCTTTTAGGGGAATAATTTGAGACTTTTTTATAACTTCATAGCAGAAAAAATAGAAATTTGATATGTATTTTCCGGCGGGGTCTTCAAGAGACTGATAAGGAAATAGTAACCCTTGGTCTCTTCCGTAATAATACAAAAATTAAATAAAAAACTTTAAATTAGGACTATGGACCGGAAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCCCGTAGAAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAAAAAAGAAGGAGAATCTTCTGAAAAATTCTGAAATATTTTAGTTTTCCCTTTTTTTAAAGTTTAATTAAATTTCCACAAATTACACATCCTTTTTTAAAGCCGATTTATCTCGATTACTGTAAAAGCTATCAAAAATTTGTCAACTGATAAAATGTTCCTGACATTATGATAAATATTTTATCA</canonical>
            <polymorphic>CAACTGATAAATTGTTTATCATAATACTGGCTATATTTTATCAGTTGATAGATTTTTGATATCTTTTGAAGGAACCGAGATAATTGAGCTCAAATTACGGTGTTCAATTTGACTGAAAACATTTTTTCAAGTCAATTTTGAGCTCAATTATCTTAGCTCCTTCAAAAGATATCTGAAATCTGTTCACTGATAAAAGATAGCTTATAATATGATAAACAATTCATCAGTGAACAAAGTTTTGATATCTTTCAAAGGAACCGAGATAATTGAGCTCAAAATTTTAAAGTGGGCTTCTAGAAGAGGATATATTGCTTATAAATTGCTTGATTGCTTCCTTTTCTCTACAGCAAACGACTTTTTTTCCATAAAAACGTTTTCCTTCTCTATTTTTCTTCTTTTCCTGTTAACTATATGTCAAAGTTTCAAAAGTACTAACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATATCTTTTCTTTGTCCAAATTTCGTAATAWTCCTTTTCATGATGTCATATTTAGCGGAACGGAAATTTCTCCTATATTTTGGTGATTGATGTCTTTTAGGGGAATAATTTGAGACTTTTTTATAACTTCATAGCAGAAAAAATAGAAATTTGATATGTATTTTCCGGCGGGGTCTTCAAGAGACTGATAAGGAAATAGTAACCCTTGGTCTCTTCCGTAATAATACAAAAATTAAATAAAAAACTTTAAATTAGGACTATGGACCGGAAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCCCGTAGAAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAAAAAAGAAGGAGAATCTTCTGAAAAATTCTGAAATATTTTAGTTTTCCCTTTTTTTAAAGTTTAATTAAATTTCCACAAATTACACATCCTTTTTTAAAGCCGATTTATCTCGATTACTGTAAAAGCTATCAAAAATTTGTCAACTGATAAAATGTTCCTGACATTATGATAAATATTTTATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTAACCCGATATTGATATTTTG</pcr_primer_p1>
		<pcr_primer_p2>CCAAGGGTTACTATTTCCTTATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACTAACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATATCTTTTCTTTGTCCAAATTTCGTAATAATCCTTTTCATGATGTCATATTTAGCGGAACGGAAATTTCTCCTATATTTTGGTGATTGATGTCTTTTAGGGGAATAATTTGAGACTTTTTTATAACTTCATAGCAGAAAAAATAGAAATTTGATATGTATTTTCCGGCGGGGTCTTCAAGAGACTGATAAGGAAATAGTAACCCTTGG</canonical_amplicon>
		<polymorphic_amplicon>ACTAACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATATCTTTTCTTTGTCCAAATTTCGTAATAWTCCTTTTCATGATGTCATATTTAGCGGAACGGAAATTTCTCCTATATTTTGGTGATTGATGTCTTTTAGGGGAATAATTTGAGACTTTTTTATAACTTCATAGCAGAAAAAATAGAAATTTGATATGTATTTTCCGGCGGGGTCTTCAAGAGACTGATAAGGAAATAGTAACCCTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10607</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>255051</contig_pos>
        <strand>+</strand>
        <context>TATGGACCGG[A/G]AAGTTCTCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATAATACAAAAATTAAATAAAAAACTTTAAATTAGGACTATGGACCGG</left_flank>
        <right_flank>AAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCCCGTAGAAAATCGAG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGATATCTTTCAAAGGAACCGAGATAATTGAGCTCAAAATTTTAAAGTGGGCTTCTAGAAGAGGATATATTGCTTATAAATTGCTTGATTGCTTCCTTTTCTCTACAGCAAACGACTTTTTTTCCATAAAAACGTTTTCCTTCTCTATTTTTCTTCTTTTCCTGTTAACTATATGTCAAAGTTTCAAAAGTACTAACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATATCTTTTCTTTGTCCAAATTTCGTAATAATCCTTTTCATGATGTCATATTTAGCGGAACGGAAATTTCTCCTATATTTTGGTGATTGATGTCTTTTAGGGGAATAATTTGAGACTTTTTTATAACTTCATAGCAGAAAAAATAGAAATTTGATATGTATTTTCCGGCGGGGTCTTCAAGAGACTGATAAGGAAATAGTAACCCTTGGTCTCTTCCGTAATAATACAAAAATTAAATAAAAAACTTTAAATTAGGACTATGGACCGGAAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCCCGTAGAAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAAAAAAGAAGGAGAATCTTCTGAAAAATTCTGAAATATTTTAGTTTTCCCTTTTTTTAAAGTTTAATTAAATTTCCACAAATTACACATCCTTTTTTAAAGCCGATTTATCTCGATTACTGTAAAAGCTATCAAAAATTTGTCAACTGATAAAATGTTCCTGACATTATGATAAATATTTTATCAGTTGACGAATATTTGATATCTTTTACAGGAAATCAGATAGCAGAGCTTAAAGTTGACGATTTGAAAGGCATACTATTAGCGTGTTTACCGGCGGAGTACTCTGCAAAACAATGTTCTAGGTACTTTAACTAGTCAGAAACCATTTCCATGCTCAGTGGTCGCTAGGAAGGGATGGAAGAAAAAGACAAACACTATTCTTTGTTGTTGTTGTTTTTTTTTGTTCGTTTCTTTTTCTATT</canonical>
            <polymorphic>TTGATATCTTTCAAAGGAACCGAGATAATTGAGCTCAAAATTTTAAAGTGGGCTTCTAGAAGAGGATATATTGCTTATAAATTGCTTGATTGCTTCCTTTTCTCTACAGCAAACGACTTTTTTTCCATAAAAACGTTTTCCTTCTCTATTTTTCTTCTTTTCCTGTTAACTATATGTCAAAGTTTCAAAAGTACTAACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATATCTTTTCTTTGTCCAAATTTCGTAATAATCCTTTTCATGATGTCATATTTAGCGGAACGGAAATTTCTCCTATATTTTGGTGATTGATGTCTTTTAGGGGAATAATTTGAGACTTTTTTATAACTTCATAGCAGAAAAAATAGAAATTTGATATGTATTTTCCGGCGGGGTCTTCAAGAGACTGATAAGGAAATAGTAACCCTTGGTCTCTTCCGTAATAATACAAAAATTAAATAAAAAACTTTAAATTAGGACTATGGACCGGRAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCCCGTAGAAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAAAAAAGAAGGAGAATCTTCTGAAAAATTCTGAAATATTTTAGTTTTCCCTTTTTTTAAAGTTTAATTAAATTTCCACAAATTACACATCCTTTTTTAAAGCCGATTTATCTCGATTACTGTAAAAGCTATCAAAAATTTGTCAACTGATAAAATGTTCCTGACATTATGATAAATATTTTATCAGTTGACGAATATTTGATATCTTTTACAGGAAATCAGATAGCAGAGCTTAAAGTTGACGATTTGAAAGGCATACTATTAGCGTGTTTACCGGCGGAGTACTCTGCAAAACAATGTTCTAGGTACTTTAACTAGTCAGAAACCATTTCCATGCTCAGTGGTCGCTAGGAAGGGATGGAAGAAAAAGACAAACACTATTCTTTGTTGTTGTTGTTTTTTTTTGTTCGTTTCTTTTTCTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATAGTAACCCTTGGTCTCTT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGATGTGTAATTTGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAATAGTAACCCTTGGTCTCTTCCGTAATAATACAAAAATTAAATAAAAAACTTTAAATTAGGACTATGGACCGGAAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCCCGTAGAAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAAAAAAGAAGGAGAATCTTCTGAAAAATTCTGAAATATTTTAGTTTTCCCTTTTTTTAAAGTTTAATTAAATTTCCACAAATTACACATCCTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAAATAGTAACCCTTGGTCTCTTCCGTAATAATACAAAAATTAAATAAAAAACTTTAAATTAGGACTATGGACCGGRAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCCCGTAGAAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAAAAAAGAAGGAGAATCTTCTGAAAAATTCTGAAATATTTTAGTTTTCCCTTTTTTTAAAGTTTAATTAAATTTCCACAAATTACACATCCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10608</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>255087</contig_pos>
        <strand>+</strand>
        <context>AATTTGAGTC[C/T]YGTASAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGACTATGGACCGGAAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTC</left_flank>
        <right_flank>CGTAGAAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAAAAAAGAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTTTAAAGTGGGCTTCTAGAAGAGGATATATTGCTTATAAATTGCTTGATTGCTTCCTTTTCTCTACAGCAAACGACTTTTTTTCCATAAAAACGTTTTCCTTCTCTATTTTTCTTCTTTTCCTGTTAACTATATGTCAAAGTTTCAAAAGTACTAACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATATCTTTTCTTTGTCCAAATTTCGTAATAATCCTTTTCATGATGTCATATTTAGCGGAACGGAAATTTCTCCTATATTTTGGTGATTGATGTCTTTTAGGGGAATAATTTGAGACTTTTTTATAACTTCATAGCAGAAAAAATAGAAATTTGATATGTATTTTCCGGCGGGGTCTTCAAGAGACTGATAAGGAAATAGTAACCCTTGGTCTCTTCCGTAATAATACAAAAATTAAATAAAAAACTTTAAATTAGGACTATGGACCGGAAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCCCGTAGAAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAAAAAAGAAGGAGAATCTTCTGAAAAATTCTGAAATATTTTAGTTTTCCCTTTTTTTAAAGTTTAATTAAATTTCCACAAATTACACATCCTTTTTTAAAGCCGATTTATCTCGATTACTGTAAAAGCTATCAAAAATTTGTCAACTGATAAAATGTTCCTGACATTATGATAAATATTTTATCAGTTGACGAATATTTGATATCTTTTACAGGAAATCAGATAGCAGAGCTTAAAGTTGACGATTTGAAAGGCATACTATTAGCGTGTTTACCGGCGGAGTACTCTGCAAAACAATGTTCTAGGTACTTTAACTAGTCAGAAACCATTTCCATGCTCAGTGGTCGCTAGGAAGGGATGGAAGAAAAAGACAAACACTATTCTTTGTTGTTGTTGTTTTTTTTTGTTCGTTTCTTTTTCTATTTGTCCGAGTCAGTCCGACCCCCTAGACATTCGGACT</canonical>
            <polymorphic>AAAATTTTAAAGTGGGCTTCTAGAAGAGGATATATTGCTTATAAATTGCTTGATTGCTTCCTTTTCTCTACAGCAAACGACTTTTTTTCCATAAAAACGTTTTCCTTCTCTATTTTTCTTCTTTTCCTGTTAACTATATGTCAAAGTTTCAAAAGTACTAACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATATCTTTTCTTTGTCCAAATTTCGTAATAATCCTTTTCATGATGTCATATTTAGCGGAACGGAAATTTCTCCTATATTTTGGTGATTGATGTCTTTTAGGGGAATAATTTGAGACTTTTTTATAACTTCATAGCAGAAAAAATAGAAATTTGATATGTATTTTCCGGCGGGGTCTTCAAGAGACTGATAAGGAAATAGTAACCCTTGGTCTCTTCCGTAATAATACAAAAATTAAATAAAAAACTTTAAATTAGGACTATGGACCGGAAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCYCGTAGAAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAAAAAAGAAGGAGAATCTTCTGAAAAATTCTGAAATATTTTAGTTTTCCCTTTTTTTAAAGTTTAATTAAATTTCCACAAATTACACATCCTTTTTTAAAGCCGATTTATCTCGATTACTGTAAAAGCTATCAAAAATTTGTCAACTGATAAAATGTTCCTGACATTATGATAAATATTTTATCAGTTGACGAATATTTGATATCTTTTACAGGAAATCAGATAGCAGAGCTTAAAGTTGACGATTTGAAAGGCATACTATTAGCGTGTTTACCGGCGGAGTACTCTGCAAAACAATGTTCTAGGTACTTTAACTAGTCAGAAACCATTTCCATGCTCAGTGGTCGCTAGGAAGGGATGGAAGAAAAAGACAAACACTATTCTTTGTTGTTGTTGTTTTTTTTTGTTCGTTTCTTTTTCTATTTGTCCGAGTCAGTCCGACCCCCTAGACATTCGGACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATAGTAACCCTTGGTCTCTT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGATGTGTAATTTGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAATAGTAACCCTTGGTCTCTTCCGTAATAATACAAAAATTAAATAAAAAACTTTAAATTAGGACTATGGACCGGAAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCCCGTAGAAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAAAAAAGAAGGAGAATCTTCTGAAAAATTCTGAAATATTTTAGTTTTCCCTTTTTTTAAAGTTTAATTAAATTTCCACAAATTACACATCCTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAAATAGTAACCCTTGGTCTCTTCCGTAATAATACAAAAATTAAATAAAAAACTTTAAATTAGGACTATGGACCGGAAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCYCGTAGAAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAAAAAAGAAGGAGAATCTTCTGAAAAATTCTGAAATATTTTAGTTTTCCCTTTTTTTAAAGTTTAATTAAATTTCCACAAATTACACATCCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10609</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>255088</contig_pos>
        <strand>+</strand>
        <context>ATTTGAGTCY[C/T]GTASAAAATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACTATGGACCGGAAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCC</left_flank>
        <right_flank>GTAGAAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAAAAAAGAAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTTAAAGTGGGCTTCTAGAAGAGGATATATTGCTTATAAATTGCTTGATTGCTTCCTTTTCTCTACAGCAAACGACTTTTTTTCCATAAAAACGTTTTCCTTCTCTATTTTTCTTCTTTTCCTGTTAACTATATGTCAAAGTTTCAAAAGTACTAACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATATCTTTTCTTTGTCCAAATTTCGTAATAATCCTTTTCATGATGTCATATTTAGCGGAACGGAAATTTCTCCTATATTTTGGTGATTGATGTCTTTTAGGGGAATAATTTGAGACTTTTTTATAACTTCATAGCAGAAAAAATAGAAATTTGATATGTATTTTCCGGCGGGGTCTTCAAGAGACTGATAAGGAAATAGTAACCCTTGGTCTCTTCCGTAATAATACAAAAATTAAATAAAAAACTTTAAATTAGGACTATGGACCGGAAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCCCGTAGAAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAAAAAAGAAGGAGAATCTTCTGAAAAATTCTGAAATATTTTAGTTTTCCCTTTTTTTAAAGTTTAATTAAATTTCCACAAATTACACATCCTTTTTTAAAGCCGATTTATCTCGATTACTGTAAAAGCTATCAAAAATTTGTCAACTGATAAAATGTTCCTGACATTATGATAAATATTTTATCAGTTGACGAATATTTGATATCTTTTACAGGAAATCAGATAGCAGAGCTTAAAGTTGACGATTTGAAAGGCATACTATTAGCGTGTTTACCGGCGGAGTACTCTGCAAAACAATGTTCTAGGTACTTTAACTAGTCAGAAACCATTTCCATGCTCAGTGGTCGCTAGGAAGGGATGGAAGAAAAAGACAAACACTATTCTTTGTTGTTGTTGTTTTTTTTTGTTCGTTTCTTTTTCTATTTGTCCGAGTCAGTCCGACCCCCTAGACATTCGGACTC</canonical>
            <polymorphic>AAATTTTAAAGTGGGCTTCTAGAAGAGGATATATTGCTTATAAATTGCTTGATTGCTTCCTTTTCTCTACAGCAAACGACTTTTTTTCCATAAAAACGTTTTCCTTCTCTATTTTTCTTCTTTTCCTGTTAACTATATGTCAAAGTTTCAAAAGTACTAACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATATCTTTTCTTTGTCCAAATTTCGTAATAATCCTTTTCATGATGTCATATTTAGCGGAACGGAAATTTCTCCTATATTTTGGTGATTGATGTCTTTTAGGGGAATAATTTGAGACTTTTTTATAACTTCATAGCAGAAAAAATAGAAATTTGATATGTATTTTCCGGCGGGGTCTTCAAGAGACTGATAAGGAAATAGTAACCCTTGGTCTCTTCCGTAATAATACAAAAATTAAATAAAAAACTTTAAATTAGGACTATGGACCGGAAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCCYGTAGAAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAAAAAAGAAGGAGAATCTTCTGAAAAATTCTGAAATATTTTAGTTTTCCCTTTTTTTAAAGTTTAATTAAATTTCCACAAATTACACATCCTTTTTTAAAGCCGATTTATCTCGATTACTGTAAAAGCTATCAAAAATTTGTCAACTGATAAAATGTTCCTGACATTATGATAAATATTTTATCAGTTGACGAATATTTGATATCTTTTACAGGAAATCAGATAGCAGAGCTTAAAGTTGACGATTTGAAAGGCATACTATTAGCGTGTTTACCGGCGGAGTACTCTGCAAAACAATGTTCTAGGTACTTTAACTAGTCAGAAACCATTTCCATGCTCAGTGGTCGCTAGGAAGGGATGGAAGAAAAAGACAAACACTATTCTTTGTTGTTGTTGTTTTTTTTTGTTCGTTTCTTTTTCTATTTGTCCGAGTCAGTCCGACCCCCTAGACATTCGGACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATAGTAACCCTTGGTCTCTT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGATGTGTAATTTGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAATAGTAACCCTTGGTCTCTTCCGTAATAATACAAAAATTAAATAAAAAACTTTAAATTAGGACTATGGACCGGAAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCCCGTAGAAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAAAAAAGAAGGAGAATCTTCTGAAAAATTCTGAAATATTTTAGTTTTCCCTTTTTTTAAAGTTTAATTAAATTTCCACAAATTACACATCCTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAAATAGTAACCCTTGGTCTCTTCCGTAATAATACAAAAATTAAATAAAAAACTTTAAATTAGGACTATGGACCGGAAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCCYGTAGAAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAAAAAAGAAGGAGAATCTTCTGAAAAATTCTGAAATATTTTAGTTTTCCCTTTTTTTAAAGTTTAATTAAATTTCCACAAATTACACATCCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10610</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>255092</contig_pos>
        <strand>+</strand>
        <context>GAGTCYYGTA[C/G]AAAATCGAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATGGACCGGAAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCCCGTA</left_flank>
        <right_flank>AAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAAAAAAGAAGGAGA</right_flank>
        <qual_score>134</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAAAGTGGGCTTCTAGAAGAGGATATATTGCTTATAAATTGCTTGATTGCTTCCTTTTCTCTACAGCAAACGACTTTTTTTCCATAAAAACGTTTTCCTTCTCTATTTTTCTTCTTTTCCTGTTAACTATATGTCAAAGTTTCAAAAGTACTAACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATATCTTTTCTTTGTCCAAATTTCGTAATAATCCTTTTCATGATGTCATATTTAGCGGAACGGAAATTTCTCCTATATTTTGGTGATTGATGTCTTTTAGGGGAATAATTTGAGACTTTTTTATAACTTCATAGCAGAAAAAATAGAAATTTGATATGTATTTTCCGGCGGGGTCTTCAAGAGACTGATAAGGAAATAGTAACCCTTGGTCTCTTCCGTAATAATACAAAAATTAAATAAAAAACTTTAAATTAGGACTATGGACCGGAAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCCCGTAGAAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAAAAAAGAAGGAGAATCTTCTGAAAAATTCTGAAATATTTTAGTTTTCCCTTTTTTTAAAGTTTAATTAAATTTCCACAAATTACACATCCTTTTTTAAAGCCGATTTATCTCGATTACTGTAAAAGCTATCAAAAATTTGTCAACTGATAAAATGTTCCTGACATTATGATAAATATTTTATCAGTTGACGAATATTTGATATCTTTTACAGGAAATCAGATAGCAGAGCTTAAAGTTGACGATTTGAAAGGCATACTATTAGCGTGTTTACCGGCGGAGTACTCTGCAAAACAATGTTCTAGGTACTTTAACTAGTCAGAAACCATTTCCATGCTCAGTGGTCGCTAGGAAGGGATGGAAGAAAAAGACAAACACTATTCTTTGTTGTTGTTGTTTTTTTTTGTTCGTTTCTTTTTCTATTTGTCCGAGTCAGTCCGACCCCCTAGACATTCGGACTCAGTC</canonical>
            <polymorphic>TTTAAAGTGGGCTTCTAGAAGAGGATATATTGCTTATAAATTGCTTGATTGCTTCCTTTTCTCTACAGCAAACGACTTTTTTTCCATAAAAACGTTTTCCTTCTCTATTTTTCTTCTTTTCCTGTTAACTATATGTCAAAGTTTCAAAAGTACTAACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATATCTTTTCTTTGTCCAAATTTCGTAATAATCCTTTTCATGATGTCATATTTAGCGGAACGGAAATTTCTCCTATATTTTGGTGATTGATGTCTTTTAGGGGAATAATTTGAGACTTTTTTATAACTTCATAGCAGAAAAAATAGAAATTTGATATGTATTTTCCGGCGGGGTCTTCAAGAGACTGATAAGGAAATAGTAACCCTTGGTCTCTTCCGTAATAATACAAAAATTAAATAAAAAACTTTAAATTAGGACTATGGACCGGAAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCCCGTASAAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAAAAAAGAAGGAGAATCTTCTGAAAAATTCTGAAATATTTTAGTTTTCCCTTTTTTTAAAGTTTAATTAAATTTCCACAAATTACACATCCTTTTTTAAAGCCGATTTATCTCGATTACTGTAAAAGCTATCAAAAATTTGTCAACTGATAAAATGTTCCTGACATTATGATAAATATTTTATCAGTTGACGAATATTTGATATCTTTTACAGGAAATCAGATAGCAGAGCTTAAAGTTGACGATTTGAAAGGCATACTATTAGCGTGTTTACCGGCGGAGTACTCTGCAAAACAATGTTCTAGGTACTTTAACTAGTCAGAAACCATTTCCATGCTCAGTGGTCGCTAGGAAGGGATGGAAGAAAAAGACAAACACTATTCTTTGTTGTTGTTGTTTTTTTTTGTTCGTTTCTTTTTCTATTTGTCCGAGTCAGTCCGACCCCCTAGACATTCGGACTCAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATAGTAACCCTTGGTCTCTT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGATGTGTAATTTGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAATAGTAACCCTTGGTCTCTTCCGTAATAATACAAAAATTAAATAAAAAACTTTAAATTAGGACTATGGACCGGAAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCCCGTAGAAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAAAAAAGAAGGAGAATCTTCTGAAAAATTCTGAAATATTTTAGTTTTCCCTTTTTTTAAAGTTTAATTAAATTTCCACAAATTACACATCCTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAAATAGTAACCCTTGGTCTCTTCCGTAATAATACAAAAATTAAATAAAAAACTTTAAATTAGGACTATGGACCGGAAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCCCGTASAAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAAAAAAGAAGGAGAATCTTCTGAAAAATTCTGAAATATTTTAGTTTTCCCTTTTTTTAAAGTTTAATTAAATTTCCACAAATTACACATCCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10611</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>255653</contig_pos>
        <strand>+</strand>
        <context>GTTTTTTTTT[C/T]CAATTTTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTTGTTTGGATGTTCTTTTTTTATCCCAAAATTGCTCAGTTTTTTTTT</left_flank>
        <right_flank>CAATTTTTCTACTTTTGTTGTAGAAAAACTCACAAAATATGGCATTCACC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCTGAAATATTTTAGTTTTCCCTTTTTTTAAAGTTTAATTAAATTTCCACAAATTACACATCCTTTTTTAAAGCCGATTTATCTCGATTACTGTAAAAGCTATCAAAAATTTGTCAACTGATAAAATGTTCCTGACATTATGATAAATATTTTATCAGTTGACGAATATTTGATATCTTTTACAGGAAATCAGATAGCAGAGCTTAAAGTTGACGATTTGAAAGGCATACTATTAGCGTGTTTACCGGCGGAGTACTCTGCAAAACAATGTTCTAGGTACTTTAACTAGTCAGAAACCATTTCCATGCTCAGTGGTCGCTAGGAAGGGATGGAAGAAAAAGACAAACACTATTCTTTGTTGTTGTTGTTTTTTTTTGTTCGTTTCTTTTTCTATTTGTCCGAGTCAGTCCGACCCCCTAGACATTCGGACTCAGTCATATCTCTCATTCTTGTTTGGATGTTCTTTTTTTATCCCAAAATTGCTCAGTTTTTTTTTCCAATTTTTCTACTTTTGTTGTAGAAAAACTCACAAAATATGGCATTCACCGGACTCAACTGGGATCATGTGAAAACAACGTTTTGGGAGGCGAATAAGATGGTAAGAGCTTTGGCTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATGGCGCCCTTTGGAGACGCAGAGAGGCTAGACAAGTAAACAACGGCAAAAACATTATGAAAGGCATAGAACGTCAAGCGAAATGATCACTGGTGTCTTATATTGAAATAAGGGGTGTTGTTGGGGGTATAGAGGACAAAATGTGTCACTGACTGTCCTGTTGTTTTCTCCATTTTTGGTTGGTTGTTTGGTGTTTTTGCGTTTTTTGGGCTTTTGAAATGTTGAAAATATGACTTTTCAGGCTTTTCGAAATTATTTTGTGGATTTTTGAAATGATATAACAAACCTGAAAATACCAGACCATGGTCTCTCACAGAACGAATACGAACTGCATGTTTAATTGCGAT</canonical>
            <polymorphic>AATTCTGAAATATTTTAGTTTTCCCTTTTTTTAAAGTTTAATTAAATTTCCACAAATTACACATCCTTTTTTAAAGCCGATTTATCTCGATTACTGTAAAAGCTATCAAAAATTTGTCAACTGATAAAATGTTCCTGACATTATGATAAATATTTTATCAGTTGACGAATATTTGATATCTTTTACAGGAAATCAGATAGCAGAGCTTAAAGTTGACGATTTGAAAGGCATACTATTAGCGTGTTTACCGGCGGAGTACTCTGCAAAACAATGTTCTAGGTACTTTAACTAGTCAGAAACCATTTCCATGCTCAGTGGTCGCTAGGAAGGGATGGAAGAAAAAGACAAACACTATTCTTTGTTGTTGTTGTTTTTTTTTGTTCGTTTCTTTTTCTATTTGTCCGAGTCAGTCCGACCCCCTAGACATTCGGACTCAGTCATATCTCTCATTCTTGTTTGGATGTTCTTTTTTTATCCCAAAATTGCTCAGTTTTTTTTTYCAATTTTTCTACTTTTGTTGTAGAAAAACTCACAAAATATGGCATTCACCGGACTCAACTGGGATCATGTGAAAACAACGTTTTGGGAGGCGAATAAGATGGTAAGAGCTTTGGCTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATGGCGCCCTTTGGAGACGCAGAGAGGCTAGACAAGTAAACAACGGCAAAAACATTATGAAAGGCATAGAACGTCAAGCGAAATGATCACTGGTGTCTTATATTGAAATAAGGGGTGTTGTTGGGGGTATAGAGGACAAAATGTGTCACTGACTGTCCTGTTGTTTTCTCCATTTTTGGTTGGTTGTTTGGTGTTTTTGCGTTTTTTGGGCTTTTGAAATGTTGAAAATATGACTTTTCAGGCTTTTCGAAATTATTTTGTGGATTTTTGAAATGATATAACAAACCTGAAAATACCAGACCATGGTCTCTCACAGAACGAATACGAACTGCATGTTTAATTGCGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCATTCTTGTTTGGATGTTCT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTACTTGTCTAGCCTCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCATTCTTGTTTGGATGTTCTTTTTTTATCCCAAAATTGCTCAGTTTTTTTTTCCAATTTTTCTACTTTTGTTGTAGAAAAACTCACAAAATATGGCATTCACCGGACTCAACTGGGATCATGTGAAAACAACGTTTTGGGAGGCGAATAAGATGGTAAGAGCTTTGGCTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATGGCGCCCTTTGGAGACGCAGAGAGGCTAGACAAGTAAACA</canonical_amplicon>
		<polymorphic_amplicon>CTCATTCTTGTTTGGATGTTCTTTTTTTATCCCAAAATTGCTCAGTTTTTTTTTYCAATTTTTCTACTTTTGTTGTAGAAAAACTCACAAAATATGGCATTCACCGGACTCAACTGGGATCATGTGAAAACAACGTTTTGGGAGGCGAATAAGATGGTAAGAGCTTTGGCTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATGGCGCCCTTTGGAGACGCAGAGAGGCTAGACAAGTAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10612</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>255670</contig_pos>
        <strand>+</strand>
        <context>TTCTACTTTT[G/T]TTGTAGAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTTTTATCCCAAAATTGCTCAGTTTTTTTTTCCAATTTTTCTACTTTT</left_flank>
        <right_flank>TTGTAGAAAAACTCACAAAATATGGCATTCACCGGACTCAACTGGGATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTCCCTTTTTTTAAAGTTTAATTAAATTTCCACAAATTACACATCCTTTTTTAAAGCCGATTTATCTCGATTACTGTAAAAGCTATCAAAAATTTGTCAACTGATAAAATGTTCCTGACATTATGATAAATATTTTATCAGTTGACGAATATTTGATATCTTTTACAGGAAATCAGATAGCAGAGCTTAAAGTTGACGATTTGAAAGGCATACTATTAGCGTGTTTACCGGCGGAGTACTCTGCAAAACAATGTTCTAGGTACTTTAACTAGTCAGAAACCATTTCCATGCTCAGTGGTCGCTAGGAAGGGATGGAAGAAAAAGACAAACACTATTCTTTGTTGTTGTTGTTTTTTTTTGTTCGTTTCTTTTTCTATTTGTCCGAGTCAGTCCGACCCCCTAGACATTCGGACTCAGTCATATCTCTCATTCTTGTTTGGATGTTCTTTTTTTATCCCAAAATTGCTCAGTTTTTTTTTCCAATTTTTCTACTTTTGTTGTAGAAAAACTCACAAAATATGGCATTCACCGGACTCAACTGGGATCATGTGAAAACAACGTTTTGGGAGGCGAATAAGATGGTAAGAGCTTTGGCTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATGGCGCCCTTTGGAGACGCAGAGAGGCTAGACAAGTAAACAACGGCAAAAACATTATGAAAGGCATAGAACGTCAAGCGAAATGATCACTGGTGTCTTATATTGAAATAAGGGGTGTTGTTGGGGGTATAGAGGACAAAATGTGTCACTGACTGTCCTGTTGTTTTCTCCATTTTTGGTTGGTTGTTTGGTGTTTTTGCGTTTTTTGGGCTTTTGAAATGTTGAAAATATGACTTTTCAGGCTTTTCGAAATTATTTTGTGGATTTTTGAAATGATATAACAAACCTGAAAATACCAGACCATGGTCTCTCACAGAACGAATACGAACTGCATGTTTAATTGCGATCTATCATAAAAAATTTG</canonical>
            <polymorphic>GTTTTCCCTTTTTTTAAAGTTTAATTAAATTTCCACAAATTACACATCCTTTTTTAAAGCCGATTTATCTCGATTACTGTAAAAGCTATCAAAAATTTGTCAACTGATAAAATGTTCCTGACATTATGATAAATATTTTATCAGTTGACGAATATTTGATATCTTTTACAGGAAATCAGATAGCAGAGCTTAAAGTTGACGATTTGAAAGGCATACTATTAGCGTGTTTACCGGCGGAGTACTCTGCAAAACAATGTTCTAGGTACTTTAACTAGTCAGAAACCATTTCCATGCTCAGTGGTCGCTAGGAAGGGATGGAAGAAAAAGACAAACACTATTCTTTGTTGTTGTTGTTTTTTTTTGTTCGTTTCTTTTTCTATTTGTCCGAGTCAGTCCGACCCCCTAGACATTCGGACTCAGTCATATCTCTCATTCTTGTTTGGATGTTCTTTTTTTATCCCAAAATTGCTCAGTTTTTTTTTCCAATTTTTCTACTTTTKTTGTAGAAAAACTCACAAAATATGGCATTCACCGGACTCAACTGGGATCATGTGAAAACAACGTTTTGGGAGGCGAATAAGATGGTAAGAGCTTTGGCTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATGGCGCCCTTTGGAGACGCAGAGAGGCTAGACAAGTAAACAACGGCAAAAACATTATGAAAGGCATAGAACGTCAAGCGAAATGATCACTGGTGTCTTATATTGAAATAAGGGGTGTTGTTGGGGGTATAGAGGACAAAATGTGTCACTGACTGTCCTGTTGTTTTCTCCATTTTTGGTTGGTTGTTTGGTGTTTTTGCGTTTTTTGGGCTTTTGAAATGTTGAAAATATGACTTTTCAGGCTTTTCGAAATTATTTTGTGGATTTTTGAAATGATATAACAAACCTGAAAATACCAGACCATGGTCTCTCACAGAACGAATACGAACTGCATGTTTAATTGCGATCTATCATAAAAAATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTGTTTGGATGTTCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTACTTGTCTAGCCTCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTGTTTGGATGTTCTTTTTTTATCCCAAAATTGCTCAGTTTTTTTTTCCAATTTTTCTACTTTTGTTGTAGAAAAACTCACAAAATATGGCATTCACCGGACTCAACTGGGATCATGTGAAAACAACGTTTTGGGAGGCGAATAAGATGGTAAGAGCTTTGGCTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATGGCGCCCTTTGGAGACGCAGAGAGGCTAGACAAGTAAACA</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTGTTTGGATGTTCTTTTTTTATCCCAAAATTGCTCAGTTTTTTTTTCCAATTTTTCTACTTTTKTTGTAGAAAAACTCACAAAATATGGCATTCACCGGACTCAACTGGGATCATGTGAAAACAACGTTTTGGGAGGCGAATAAGATGGTAAGAGCTTTGGCTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATGGCGCCCTTTGGAGACGCAGAGAGGCTAGACAAGTAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10613</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>255763</contig_pos>
        <strand>+</strand>
        <context>TGGTAAGAGC[C/T]TTGGCTGAag</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGGATCATGTGAAAACAACGTTTTGGGAGGCGAATAAGATGGTAAGAGC</left_flank>
        <right_flank>TTGGCTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATGGCGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTGTCAACTGATAAAATGTTCCTGACATTATGATAAATATTTTATCAGTTGACGAATATTTGATATCTTTTACAGGAAATCAGATAGCAGAGCTTAAAGTTGACGATTTGAAAGGCATACTATTAGCGTGTTTACCGGCGGAGTACTCTGCAAAACAATGTTCTAGGTACTTTAACTAGTCAGAAACCATTTCCATGCTCAGTGGTCGCTAGGAAGGGATGGAAGAAAAAGACAAACACTATTCTTTGTTGTTGTTGTTTTTTTTTGTTCGTTTCTTTTTCTATTTGTCCGAGTCAGTCCGACCCCCTAGACATTCGGACTCAGTCATATCTCTCATTCTTGTTTGGATGTTCTTTTTTTATCCCAAAATTGCTCAGTTTTTTTTTCCAATTTTTCTACTTTTGTTGTAGAAAAACTCACAAAATATGGCATTCACCGGACTCAACTGGGATCATGTGAAAACAACGTTTTGGGAGGCGAATAAGATGGTAAGAGCTTTGGCTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATGGCGCCCTTTGGAGACGCAGAGAGGCTAGACAAGTAAACAACGGCAAAAACATTATGAAAGGCATAGAACGTCAAGCGAAATGATCACTGGTGTCTTATATTGAAATAAGGGGTGTTGTTGGGGGTATAGAGGACAAAATGTGTCACTGACTGTCCTGTTGTTTTCTCCATTTTTGGTTGGTTGTTTGGTGTTTTTGCGTTTTTTGGGCTTTTGAAATGTTGAAAATATGACTTTTCAGGCTTTTCGAAATTATTTTGTGGATTTTTGAAATGATATAACAAACCTGAAAATACCAGACCATGGTCTCTCACAGAACGAATACGAACTGCATGTTTAATTGCGATCTATCATAAAAAATTTGGTGTGACAGGTTTGATTTTATAGAGATTCAAGATGATTCGATAGATTCATATGGTCCTTTTCCGGGATTTCGAAAAACCTCATTTTCAAAGTT</canonical>
            <polymorphic>AATTTGTCAACTGATAAAATGTTCCTGACATTATGATAAATATTTTATCAGTTGACGAATATTTGATATCTTTTACAGGAAATCAGATAGCAGAGCTTAAAGTTGACGATTTGAAAGGCATACTATTAGCGTGTTTACCGGCGGAGTACTCTGCAAAACAATGTTCTAGGTACTTTAACTAGTCAGAAACCATTTCCATGCTCAGTGGTCGCTAGGAAGGGATGGAAGAAAAAGACAAACACTATTCTTTGTTGTTGTTGTTTTTTTTTGTTCGTTTCTTTTTCTATTTGTCCGAGTCAGTCCGACCCCCTAGACATTCGGACTCAGTCATATCTCTCATTCTTGTTTGGATGTTCTTTTTTTATCCCAAAATTGCTCAGTTTTTTTTTCCAATTTTTCTACTTTTGTTGTAGAAAAACTCACAAAATATGGCATTCACCGGACTCAACTGGGATCATGTGAAAACAACGTTTTGGGAGGCGAATAAGATGGTAAGAGCYTTGGCTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATGGCGCCCTTTGGAGACGCAGAGAGGCTAGACAAGTAAACAACGGCAAAAACATTATGAAAGGCATAGAACGTCAAGCGAAATGATCACTGGTGTCTTATATTGAAATAAGGGGTGTTGTTGGGGGTATAGAGGACAAAATGTGTCACTGACTGTCCTGTTGTTTTCTCCATTTTTGGTTGGTTGTTTGGTGTTTTTGCGTTTTTTGGGCTTTTGAAATGTTGAAAATATGACTTTTCAGGCTTTTCGAAATTATTTTGTGGATTTTTGAAATGATATAACAAACCTGAAAATACCAGACCATGGTCTCTCACAGAACGAATACGAACTGCATGTTTAATTGCGATCTATCATAAAAAATTTGGTGTGACAGGTTTGATTTTATAGAGATTCAAGATGATTCGATAGATTCATATGGTCCTTTTCCGGGATTTCGAAAAACCTCATTTTCAAAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>502 403 95</canonical_bands>
                <polymorphic_bands>905 95</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>403 215 183 95 66 32 6</canonical_bands>
                <polymorphic_bands>409 215 183 95 66 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTGTTTGGATGTTCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTACTTGTCTAGCCTCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTGTTTGGATGTTCTTTTTTTATCCCAAAATTGCTCAGTTTTTTTTTCCAATTTTTCTACTTTTGTTGTAGAAAAACTCACAAAATATGGCATTCACCGGACTCAACTGGGATCATGTGAAAACAACGTTTTGGGAGGCGAATAAGATGGTAAGAGCTTTGGCTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATGGCGCCCTTTGGAGACGCAGAGAGGCTAGACAAGTAAACA</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTGTTTGGATGTTCTTTTTTTATCCCAAAATTGCTCAGTTTTTTTTTCCAATTTTTCTACTTTTGTTGTAGAAAAACTCACAAAATATGGCATTCACCGGACTCAACTGGGATCATGTGAAAACAACGTTTTGGGAGGCGAATAAGATGGTAAGAGCYTTGGCTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATGGCGCCCTTTGGAGACGCAGAGAGGCTAGACAAGTAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10614</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>256048</contig_pos>
        <strand>+</strand>
        <context>GACTTTTCAG[G/T]CTTTTYGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTTTTTGCGTTTTTTGGGCTTTTGAAATGTTGAAAATATGACTTTTCAG</left_flank>
        <right_flank>CTTTTCGAAATTATTTTGTGGATTTTTGAAATGATATAACAAACCTGAAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTGTCCGAGTCAGTCCGACCCCCTAGACATTCGGACTCAGTCATATCTCTCATTCTTGTTTGGATGTTCTTTTTTTATCCCAAAATTGCTCAGTTTTTTTTTCCAATTTTTCTACTTTTGTTGTAGAAAAACTCACAAAATATGGCATTCACCGGACTCAACTGGGATCATGTGAAAACAACGTTTTGGGAGGCGAATAAGATGGTAAGAGCTTTGGCTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATGGCGCCCTTTGGAGACGCAGAGAGGCTAGACAAGTAAACAACGGCAAAAACATTATGAAAGGCATAGAACGTCAAGCGAAATGATCACTGGTGTCTTATATTGAAATAAGGGGTGTTGTTGGGGGTATAGAGGACAAAATGTGTCACTGACTGTCCTGTTGTTTTCTCCATTTTTGGTTGGTTGTTTGGTGTTTTTGCGTTTTTTGGGCTTTTGAAATGTTGAAAATATGACTTTTCAGGCTTTTCGAAATTATTTTGTGGATTTTTGAAATGATATAACAAACCTGAAAATACCAGACCATGGTCTCTCACAGAACGAATACGAACTGCATGTTTAATTGCGATCTATCATAAAAAATTTGGTGTGACAGGTTTGATTTTATAGAGATTCAAGATGATTCGATAGATTCATATGGTCCTTTTCCGGGATTTCGAAAAACCTCATTTTCAAAGTTTTTGTATGGACAAACTTTTGATTCTGAATTTCTGAGTTTCTGAGTTTCTGAATTTTTGAATTTTCGAATTTCTGAATTCACGAATTTTTGAATTTCTGAATTTCCGAGTTTCTGAATTTTTGAATTTTCGAATTTCTGAATTCACGAATTTTTGAATTTCTGAATTCACGAATTTCTTATTTTCTGAATTTTTGAATTTCTGAATTTCCGAGTTTCTGAATTTTTGTATTCCTGAATTTCCGAGTATCTAAATTTTCGAACTTCGGAATATCTGAATTTTGAAAT</canonical>
            <polymorphic>ATTTGTCCGAGTCAGTCCGACCCCCTAGACATTCGGACTCAGTCATATCTCTCATTCTTGTTTGGATGTTCTTTTTTTATCCCAAAATTGCTCAGTTTTTTTTTCCAATTTTTCTACTTTTGTTGTAGAAAAACTCACAAAATATGGCATTCACCGGACTCAACTGGGATCATGTGAAAACAACGTTTTGGGAGGCGAATAAGATGGTAAGAGCTTTGGCTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATGGCGCCCTTTGGAGACGCAGAGAGGCTAGACAAGTAAACAACGGCAAAAACATTATGAAAGGCATAGAACGTCAAGCGAAATGATCACTGGTGTCTTATATTGAAATAAGGGGTGTTGTTGGGGGTATAGAGGACAAAATGTGTCACTGACTGTCCTGTTGTTTTCTCCATTTTTGGTTGGTTGTTTGGTGTTTTTGCGTTTTTTGGGCTTTTGAAATGTTGAAAATATGACTTTTCAGKCTTTTCGAAATTATTTTGTGGATTTTTGAAATGATATAACAAACCTGAAAATACCAGACCATGGTCTCTCACAGAACGAATACGAACTGCATGTTTAATTGCGATCTATCATAAAAAATTTGGTGTGACAGGTTTGATTTTATAGAGATTCAAGATGATTCGATAGATTCATATGGTCCTTTTCCGGGATTTCGAAAAACCTCATTTTCAAAGTTTTTGTATGGACAAACTTTTGATTCTGAATTTCTGAGTTTCTGAGTTTCTGAATTTTTGAATTTTCGAATTTCTGAATTCACGAATTTTTGAATTTCTGAATTTCCGAGTTTCTGAATTTTTGAATTTTCGAATTTCTGAATTCACGAATTTTTGAATTTCTGAATTCACGAATTTCTTATTTTCTGAATTTTTGAATTTCTGAATTTCCGAGTTTCTGAATTTTTGTATTCCTGAATTTCCGAGTATCTAAATTTTCGAACTTCGGAATATCTGAATTTTGAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>500 213 183 66 32 6</canonical_bands>
                <polymorphic_bands>532 213 183 66 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATATTGAAATAAGGGGTGTTG</pcr_primer_p1>
		<pcr_primer_p2>AATTAAACATGCAGTTCGTATTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTATATTGAAATAAGGGGTGTTGTTGGGGGTATAGAGGACAAAATGTGTCACTGACTGTCCTGTTGTTTTCTCCATTTTTGGTTGGTTGTTTGGTGTTTTTGCGTTTTTTGGGCTTTTGAAATGTTGAAAATATGACTTTTCAGGCTTTTCGAAATTATTTTGTGGATTTTTGAAATGATATAACAAACCTGAAAATACCAGACCATGGTCTCTCACAGAACGAATACGAACTGCATGTTTAATT</canonical_amplicon>
		<polymorphic_amplicon>TTATATTGAAATAAGGGGTGTTGTTGGGGGTATAGAGGACAAAATGTGTCACTGACTGTCCTGTTGTTTTCTCCATTTTTGGTTGGTTGTTTGGTGTTTTTGCGTTTTTTGGGCTTTTGAAATGTTGAAAATATGACTTTTCAGKCTTTTCGAAATTATTTTGTGGATTTTTGAAATGATATAACAAACCTGAAAATACCAGACCATGGTCTCTCACAGAACGAATACGAACTGCATGTTTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10615</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>256054</contig_pos>
        <strand>+</strand>
        <context>TCAGKCTTTT[C/T]GAAATTATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCGTTTTTTGGGCTTTTGAAATGTTGAAAATATGACTTTTCAGGCTTTT</left_flank>
        <right_flank>GAAATTATTTTGTGGATTTTTGAAATGATATAACAAACCTGAAAATACCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGAGTCAGTCCGACCCCCTAGACATTCGGACTCAGTCATATCTCTCATTCTTGTTTGGATGTTCTTTTTTTATCCCAAAATTGCTCAGTTTTTTTTTCCAATTTTTCTACTTTTGTTGTAGAAAAACTCACAAAATATGGCATTCACCGGACTCAACTGGGATCATGTGAAAACAACGTTTTGGGAGGCGAATAAGATGGTAAGAGCTTTGGCTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATGGCGCCCTTTGGAGACGCAGAGAGGCTAGACAAGTAAACAACGGCAAAAACATTATGAAAGGCATAGAACGTCAAGCGAAATGATCACTGGTGTCTTATATTGAAATAAGGGGTGTTGTTGGGGGTATAGAGGACAAAATGTGTCACTGACTGTCCTGTTGTTTTCTCCATTTTTGGTTGGTTGTTTGGTGTTTTTGCGTTTTTTGGGCTTTTGAAATGTTGAAAATATGACTTTTCAGGCTTTTCGAAATTATTTTGTGGATTTTTGAAATGATATAACAAACCTGAAAATACCAGACCATGGTCTCTCACAGAACGAATACGAACTGCATGTTTAATTGCGATCTATCATAAAAAATTTGGTGTGACAGGTTTGATTTTATAGAGATTCAAGATGATTCGATAGATTCATATGGTCCTTTTCCGGGATTTCGAAAAACCTCATTTTCAAAGTTTTTGTATGGACAAACTTTTGATTCTGAATTTCTGAGTTTCTGAGTTTCTGAATTTTTGAATTTTCGAATTTCTGAATTCACGAATTTTTGAATTTCTGAATTTCCGAGTTTCTGAATTTTTGAATTTTCGAATTTCTGAATTCACGAATTTTTGAATTTCTGAATTCACGAATTTCTTATTTTCTGAATTTTTGAATTTCTGAATTTCCGAGTTTCTGAATTTTTGTATTCCTGAATTTCCGAGTATCTAAATTTTCGAACTTCGGAATATCTGAATTTTGAAATTTCCGA</canonical>
            <polymorphic>CCGAGTCAGTCCGACCCCCTAGACATTCGGACTCAGTCATATCTCTCATTCTTGTTTGGATGTTCTTTTTTTATCCCAAAATTGCTCAGTTTTTTTTTCCAATTTTTCTACTTTTGTTGTAGAAAAACTCACAAAATATGGCATTCACCGGACTCAACTGGGATCATGTGAAAACAACGTTTTGGGAGGCGAATAAGATGGTAAGAGCTTTGGCTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATGGCGCCCTTTGGAGACGCAGAGAGGCTAGACAAGTAAACAACGGCAAAAACATTATGAAAGGCATAGAACGTCAAGCGAAATGATCACTGGTGTCTTATATTGAAATAAGGGGTGTTGTTGGGGGTATAGAGGACAAAATGTGTCACTGACTGTCCTGTTGTTTTCTCCATTTTTGGTTGGTTGTTTGGTGTTTTTGCGTTTTTTGGGCTTTTGAAATGTTGAAAATATGACTTTTCAGGCTTTTYGAAATTATTTTGTGGATTTTTGAAATGATATAACAAACCTGAAAATACCAGACCATGGTCTCTCACAGAACGAATACGAACTGCATGTTTAATTGCGATCTATCATAAAAAATTTGGTGTGACAGGTTTGATTTTATAGAGATTCAAGATGATTCGATAGATTCATATGGTCCTTTTCCGGGATTTCGAAAAACCTCATTTTCAAAGTTTTTGTATGGACAAACTTTTGATTCTGAATTTCTGAGTTTCTGAGTTTCTGAATTTTTGAATTTTCGAATTTCTGAATTCACGAATTTTTGAATTTCTGAATTTCCGAGTTTCTGAATTTTTGAATTTTCGAATTTCTGAATTCACGAATTTTTGAATTTCTGAATTCACGAATTTCTTATTTTCTGAATTTTTGAATTTCTGAATTTCCGAGTTTCTGAATTTTTGTATTCCTGAATTTCCGAGTATCTAAATTTTCGAACTTCGGAATATCTGAATTTTGAAATTTCCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>499 187 128 87 64 35</canonical_bands>
                <polymorphic_bands>686 128 87 64 35</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 155 128 87 64 34 32</canonical_bands>
                <polymorphic_bands>655 128 87 64 34 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATATTGAAATAAGGGGTGTTG</pcr_primer_p1>
		<pcr_primer_p2>AATTAAACATGCAGTTCGTATTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTATATTGAAATAAGGGGTGTTGTTGGGGGTATAGAGGACAAAATGTGTCACTGACTGTCCTGTTGTTTTCTCCATTTTTGGTTGGTTGTTTGGTGTTTTTGCGTTTTTTGGGCTTTTGAAATGTTGAAAATATGACTTTTCAGGCTTTTCGAAATTATTTTGTGGATTTTTGAAATGATATAACAAACCTGAAAATACCAGACCATGGTCTCTCACAGAACGAATACGAACTGCATGTTTAATT</canonical_amplicon>
		<polymorphic_amplicon>TTATATTGAAATAAGGGGTGTTGTTGGGGGTATAGAGGACAAAATGTGTCACTGACTGTCCTGTTGTTTTCTCCATTTTTGGTTGGTTGTTTGGTGTTTTTGCGTTTTTTGGGCTTTTGAAATGTTGAAAATATGACTTTTCAGGCTTTTYGAAATTATTTTGTGGATTTTTGAAATGATATAACAAACCTGAAAATACCAGACCATGGTCTCTCACAGAACGAATACGAACTGCATGTTTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10621</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>257729</contig_pos>
        <strand>+</strand>
        <context>ATTCGGCGTC[A/G]GAGAGCTCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACGGGGCAGCGATGTCTAAGAAGCCTTGTCTAGAGAGCGATTCGGCGTC</left_flank>
        <right_flank>GAGAGCTCAGAAGCAGAGGATGCCAAAGGGTCGATTAGGTAGGAATCTGG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCTGAATTCACTACTTTCTTATTTTCTGAATTTTCGAATTTTTGAATTTATGAATTTCCGGGAAAAATGGCATTTTTTGGAATATTTTCTTCCTGAAAAAGGCCATACCGGAATTCTAGAATCATTAATTAATTTTAAACTTATACCTTATTCGAATCATCTTGAATCTGTACAAAATCAGACCTGCCGCACCAAATTTTAACTCATGGTAGATCAAAATTACATTTGCCGTTCGTAGACCTGAGCGCGATTCTTCTATTGAATCTGCCTCAAAATGTCCTTTCCAGCTAGACTCAATGGTTACAATGATTGCTCGAAGCAGCGGGAGCCGTGAGAGCTCCGCTGAGTCGAGATCGTCGGGAAGCTCGTCGGACGGAGCACTTGTCGCAGGTCCTAATGGCAAACTCGTCATGTTGAAACGAAAAAGTACGGATGAGGATGAGGAGGACGGGGCAGCGATGTCTAAGAAGCCTTGTCTAGAGAGCGATTCGGCGTCAGAGAGCTCAGAAGCAGAGGATGCCAAAGGGTCGATTAGGTAGGAATCTGGGTTATTTGGAAATCTGGGAAAACGTGGATTTCTGCGCAAAAACAGCTTTGAGTTAACTTTTAACACAAAAAATATGACAGCTGAAGTTGCCTTTGAGCCAAAAAAAGCGAAAAAAGACAGTTACAAGTAAGTACCATGAGCACTAACGTAGTTCAAACGCGCATAACTTGAGCAGCTGCGAATTTAAACAACTTTTCCCGGTTTTCAGATTCCTCTCCTCACTAACCAACGTGATAATGAGGCCCGCCCAAAAAGCAACGTCTACATACAGCGGCGCCGATGAATGGGTGCCAAAGGAGATGGAGGAGATCGCCGAGTTCCCATTGGAGTCCATTGACAAGTATAAGAAAGTGCATCCGAACGCAGAGGCGCCGAAAAAGTTCATGCTGGTTAATGGGGAGTTCGCGGTGGTCGCTAGTTTGGAGGTAAATTTCACTATATATGAAATTC</canonical>
            <polymorphic>ATTTCTGAATTCACTACTTTCTTATTTTCTGAATTTTCGAATTTTTGAATTTATGAATTTCCGGGAAAAATGGCATTTTTTGGAATATTTTCTTCCTGAAAAAGGCCATACCGGAATTCTAGAATCATTAATTAATTTTAAACTTATACCTTATTCGAATCATCTTGAATCTGTACAAAATCAGACCTGCCGCACCAAATTTTAACTCATGGTAGATCAAAATTACATTTGCCGTTCGTAGACCTGAGCGCGATTCTTCTATTGAATCTGCCTCAAAATGTCCTTTCCAGCTAGACTCAATGGTTACAATGATTGCTCGAAGCAGCGGGAGCCGTGAGAGCTCCGCTGAGTCGAGATCGTCGGGAAGCTCGTCGGACGGAGCACTTGTCGCAGGTCCTAATGGCAAACTCGTCATGTTGAAACGAAAAAGTACGGATGAGGATGAGGAGGACGGGGCAGCGATGTCTAAGAAGCCTTGTCTAGAGAGCGATTCGGCGTCRGAGAGCTCAGAAGCAGAGGATGCCAAAGGGTCGATTAGGTAGGAATCTGGGTTATTTGGAAATCTGGGAAAACGTGGATTTCTGCGCAAAAACAGCTTTGAGTTAACTTTTAACACAAAAAATATGACAGCTGAAGTTGCCTTTGAGCCAAAAAAAGCGAAAAAAGACAGTTACAAGTAAGTACCATGAGCACTAACGTAGTTCAAACGCGCATAACTTGAGCAGCTGCGAATTTAAACAACTTTTCCCGGTTTTCAGATTCCTCTCCTCACTAACCAACGTGATAATGAGGCCCGCCCAAAAAGCAACGTCTACATACAGCGGCGCCGATGAATGGGTGCCAAAGGAGATGGAGGAGATCGCCGAGTTCCCATTGGAGTCCATTGACAAGTATAAGAAAGTGCATCCGAACGCAGAGGCGCCGAAAAAGTTCATGCTGGTTAATGGGGAGTTCGCGGTGGTCGCTAGTTTGGAGGTAAATTTCACTATATATGAAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCATGTTGAAACGAAAAAGTA</pcr_primer_p1>
		<pcr_primer_p2>GCAACTTCAGCTGTCATATTT</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>GTCATGTTGAAACGAAAAAGTACGGATGAGGATGAGGAGGACGGGGCAGCGATGTCTAAGAAGCCTTGTCTAGAGAGCGATTCGGCGTCAGAGAGCTCAGAAGCAGAGGATGCCAAAGGGTCGATTAGGTAGGAATCTGGGTTATTTGGAAATCTGGGAAAACGTGGATTTCTGCGCAAAAACAGCTTTGAGTTAACTTTTAACACAAAAAATATGACAGCTGAAGTTGC</canonical_amplicon>
		<polymorphic_amplicon>GTCATGTTGAAACGAAAAAGTACGGATGAGGATGAGGAGGACGGGGCAGCGATGTCTAAGAAGCCTTGTCTAGAGAGCGATTCGGCGTCRGAGAGCTCAGAAGCAGAGGATGCCAAAGGGTCGATTAGGTAGGAATCTGGGTTATTTGGAAATCTGGGAAAACGTGGATTTCTGCGCAAAAACAGCTTTGAGTTAACTTTTAACACAAAAAATATGACAGCTGAAGTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10622</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>259116</contig_pos>
        <strand>+</strand>
        <context>AACTCGCCAC[A/G]CCAACACAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAGAAGCTCACTGAGGAGCAAGCGTTGAGAGCACAAGAGAACTCGCCAC</left_flank>
        <right_flank>CCAACACAAGCATCACGATTCGAGAGAAGAGAGATTGACGAAGAACGAGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTTCCGTTTTCCGCGGAAGAAATTCCCCTTTCCGTTTCCGTATTTTGGGAAAATGCGTTTCCTCCCATCACTGATATATGGTACTGTATTGTTTTTTATTTAACTAAACAATTGTCAAACTTTCGGAATTTTCAGAAATTTGGAATTCACGAATTTCAGATTTTATAGAACTTTTGGATATTTAGAATATACGAACATTTTTTTTAATTGAAGAATATAAGAATTTCAAAATTTTCGATTTTTAAGAATTTTAGAATTCCAGAATCTCGGAATTTCGGAATTTGAGAATTTTCGGAACTTTAGGATTTTAAGATCTTCCAGAACTTCTGTAATTTTAGAATTGTATAGTTTTCGGAATTTCTGAGCATTAAAGTCATATATCTTACCATGCATAGCGCTATATATTCCACTATATATTTCGCTATATATGGTACTATATATGACATTTCAGAAGCTCACTGAGGAGCAAGCGTTGAGAGCACAAGAGAACTCGCCACACCAACACAAGCATCACGATTCGAGAGAAGAGAGATTGACGAAGAACGAGTTGACGGATAATGAGGATCAGAAGAAGAAGAAGGAGAGAGAGTACTGAAAAACAGATTTACCGTAAAACCTGTAATAGAAGGGCCCTCTAACTGTTGACTTTGAGCCAGATTATCTTGGTTCTTGTCAGAGATATCAAGAAGTTGTCAACTGATAAATTGTCTATCACAATGGCACAAACATTTTATCGGTTGACATATTTTGATATCTCGCATAGGAGCTGAGATGATTGAGCTCAAACTTGACAATGTGGGAGTCCTTCTATTACAGGTTTTACGGTAGTTGCCTTTTTTAATTCTAAAAAAAGTTTCAGAGCCAAAGAAGAGGAAGAGGCGAAGAAAGGAGAGAAGGTGCTGTACCATTTGGCGATTACACTATTCAACGAGAATAAGGAGAAATATGTGATGTCGTTGTTTAGAAGTCATAAGGTTTGGCATTTGAGAGAAAACCTC</canonical>
            <polymorphic>CGTTTCCGTTTTCCGCGGAAGAAATTCCCCTTTCCGTTTCCGTATTTTGGGAAAATGCGTTTCCTCCCATCACTGATATATGGTACTGTATTGTTTTTTATTTAACTAAACAATTGTCAAACTTTCGGAATTTTCAGAAATTTGGAATTCACGAATTTCAGATTTTATAGAACTTTTGGATATTTAGAATATACGAACATTTTTTTTAATTGAAGAATATAAGAATTTCAAAATTTTCGATTTTTAAGAATTTTAGAATTCCAGAATCTCGGAATTTCGGAATTTGAGAATTTTCGGAACTTTAGGATTTTAAGATCTTCCAGAACTTCTGTAATTTTAGAATTGTATAGTTTTCGGAATTTCTGAGCATTAAAGTCATATATCTTACCATGCATAGCGCTATATATTCCACTATATATTTCGCTATATATGGTACTATATATGACATTTCAGAAGCTCACTGAGGAGCAAGCGTTGAGAGCACAAGAGAACTCGCCACRCCAACACAAGCATCACGATTCGAGAGAAGAGAGATTGACGAAGAACGAGTTGACGGATAATGAGGATCAGAAGAAGAAGAAGGAGAGAGAGTACTGAAAAACAGATTTACCGTAAAACCTGTAATAGAAGGGCCCTCTAACTGTTGACTTTGAGCCAGATTATCTTGGTTCTTGTCAGAGATATCAAGAAGTTGTCAACTGATAAATTGTCTATCACAATGGCACAAACATTTTATCGGTTGACATATTTTGATATCTCGCATAGGAGCTGAGATGATTGAGCTCAAACTTGACAATGTGGGAGTCCTTCTATTACAGGTTTTACGGTAGTTGCCTTTTTTAATTCTAAAAAAAGTTTCAGAGCCAAAGAAGAGGAAGAGGCGAAGAAAGGAGAGAAGGTGCTGTACCATTTGGCGATTACACTATTCAACGAGAATAAGGAGAAATATGTGATGTCGTTGTTTAGAAGTCATAAGGTTTGGCATTTGAGAGAAAACCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>260 201 101 79 76 72 49 48 30 23 21 15 9 8 6 2</canonical_bands>
                <polymorphic_bands>260 201 101 79 76 72 49 48 30 23 21 15 9 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGAATTTCTGAGCATTAAA</pcr_primer_p1>
		<pcr_primer_p2>CTGTTTTTCAGTACTCTCTCTCCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGGAATTTCTGAGCATTAAAGTCATATATCTTACCATGCATAGCGCTATATATTCCACTATATATTTCGCTATATATGGTACTATATATGACATTTCAGAAGCTCACTGAGGAGCAAGCGTTGAGAGCACAAGAGAACTCGCCACACCAACACAAGCATCACGATTCGAGAGAAGAGAGATTGACGAAGAACGAGTTGACGGATAATGAGGATCAGAAGAAGAAGAAGGAGAGAGAGTACTGAAAAACAG</canonical_amplicon>
		<polymorphic_amplicon>CGGAATTTCTGAGCATTAAAGTCATATATCTTACCATGCATAGCGCTATATATTCCACTATATATTTCGCTATATATGGTACTATATATGACATTTCAGAAGCTCACTGAGGAGCAAGCGTTGAGAGCACAAGAGAACTCGCCACRCCAACACAAGCATCACGATTCGAGAGAAGAGAGATTGACGAAGAACGAGTTGACGGATAATGAGGATCAGAAGAAGAAGAAGGAGAGAGAGTACTGAAAAACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10623</snp_id>
        <super_contig>c005400932.Contig1</super_contig>
        <contig_pos>42260</contig_pos>
        <strand>+</strand>
        <context>TATCAGTGTG[A/G]AGGTATTGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTGGAGGTTAGTTCTGGTTGTGGGCAACGGTAGAAATTATCAGTGTG</left_flank>
        <right_flank>AGGTATTGATCAGAACACAGAAAATGTGAACGTGCAGGTTTAATATTAGT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAATCCTTCCGTCTCCGCATGTTCCAGGAGCAGCACGGATTTGAGCCGGTAGTATGTGCCTGATGCAGATCTGTCCTATCTATAAAATAATACTTCTCCACTAACGGATTTGACTTAAAAATCCTTTTCCCTTTTCGATAACCACCTCAACTCACCTTTCTCAAATTTTATTGTCCGTTTGGTGGTACACAGTTACAGTAGCACTTTTAGCACTTTCAAAACATATAAATCATTTCAAATTGCATTAAGTTTCACAAACCCAAATATACTCTGTTCATGTTACAATGGAATAACTTGTGATCTCTGGAATAGTTCTAACTTTGCATTTTTCAGGTTTTCATGACCAAGAAGCGGACCCGTGACAACAAATCGGTCATGAGCGAGTTCAAGGGGGGCGATTTGAACAAGTACACCGCGAAGACTTATGCCATTCAAAATGGAAACGAGGTTTTTGGAGGTTAGTTCTGGTTGTGGGCAACGGTAGAAATTATCAGTGTGAAGGTATTGATCAGAACACAGAAAATGTGAACGTGCAGGTTTAATATTAGTTCAGGAGCAATTGAGCATAAATAATATGAAGGAAATAGTTTTTGAAGGAAGTGTTTTACCACACTGGGAAATAAAGATTTGAACTTTTGATTTTTCATACCCAGGTATAGTTTTTTATCGTAATTTCTTATCTTAATTTCTAAAAGAGGTATTGAAAATCTGTCAATTGATGAAATGTCATAATATCATCAAAATTATATCAGTTTACAGATTTTTAGTACCTCTTATAGAAATTAAGATAATTGATCTCAAAGCGCAGGTGGCCTTCGATTAGAGAGTTTACGGTATTTGTTTTGCCAAACTTCAAGAATCATTGAGATTGCTCAGTGGAGAAATAAAAAAAACACACGTTGCATTTGGAAGAAAAACAATTTTGTGGTCTGGATTTTATGATTTTCACGGGGGATATAAAAAGAAAAACACTTTGTAACATTCTTTTTGCTTCGAGAA</canonical>
            <polymorphic>TGAATCCTTCCGTCTCCGCATGTTCCAGGAGCAGCACGGATTTGAGCCGGTAGTATGTGCCTGATGCAGATCTGTCCTATCTATAAAATAATACTTCTCCACTAACGGATTTGACTTAAAAATCCTTTTCCCTTTTCGATAACCACCTCAACTCACCTTTCTCAAATTTTATTGTCCGTTTGGTGGTACACAGTTACAGTAGCACTTTTAGCACTTTCAAAACATATAAATCATTTCAAATTGCATTAAGTTTCACAAACCCAAATATACTCTGTTCATGTTACAATGGAATAACTTGTGATCTCTGGAATAGTTCTAACTTTGCATTTTTCAGGTTTTCATGACCAAGAAGCGGACCCGTGACAACAAATCGGTCATGAGCGAGTTCAAGGGGGGCGATTTGAACAAGTACACCGCGAAGACTTATGCCATTCAAAATGGAAACGAGGTTTTTGGAGGTTAGTTCTGGTTGTGGGCAACGGTAGAAATTATCAGTGTGRAGGTATTGATCAGAACACAGAAAATGTGAACGTGCAGGTTTAATATTAGTTCAGGAGCAATTGAGCATAAATAATATGAAGGAAATAGTTTTTGAAGGAAGTGTTTTACCACACTGGGAAATAAAGATTTGAACTTTTGATTTTTCATACCCAGGTATAGTTTTTTATCGTAATTTCTTATCTTAATTTCTAAAAGAGGTATTGAAAATCTGTCAATTGATGAAATGTCATAATATCATCAAAATTATATCAGTTTACAGATTTTTAGTACCTCTTATAGAAATTAAGATAATTGATCTCAAAGCGCAGGTGGCCTTCGATTAGAGAGTTTACGGTATTTGTTTTGCCAAACTTCAAGAATCATTGAGATTGCTCAGTGGAGAAATAAAAAAAACACACGTTGCATTTGGAAGAAAAACAATTTTGTGGTCTGGATTTTATGATTTTCACGGGGGATATAAAAAGAAAAACACTTTGTAACATTCTTTTTGCTTCGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTCTAACTTTGCATTTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>TGCTCCTGAACTAATATTAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGTTCTAACTTTGCATTTTTCAGGTTTTCATGACCAAGAAGCGGACCCGTGACAACAAATCGGTCATGAGCGAGTTCAAGGGGGGCGATTTGAACAAGTACACCGCGAAGACTTATGCCATTCAAAATGGAAACGAGGTTTTTGGAGGTTAGTTCTGGTTGTGGGCAACGGTAGAAATTATCAGTGTGAAGGTATTGATCAGAACACAGAAAATGTGAACGTGCAGGTTTAATATTAGTTCAGGAGCA</canonical_amplicon>
		<polymorphic_amplicon>AGTTCTAACTTTGCATTTTTCAGGTTTTCATGACCAAGAAGCGGACCCGTGACAACAAATCGGTCATGAGCGAGTTCAAGGGGGGCGATTTGAACAAGTACACCGCGAAGACTTATGCCATTCAAAATGGAAACGAGGTTTTTGGAGGTTAGTTCTGGTTGTGGGCAACGGTAGAAATTATCAGTGTGRAGGTATTGATCAGAACACAGAAAATGTGAACGTGCAGGTTTAATATTAGTTCAGGAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10624</snp_id>
        <super_contig>c005400932.Contig1</super_contig>
        <contig_pos>42587</contig_pos>
        <strand>+</strand>
        <context>TCGATTAGAG[A/T]GTTTACGGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATAGAAATTAAGATAATTGATCTCAAAGCGCAGGTGGCCTTCGATTAGAG</left_flank>
        <right_flank>GTTTACGGTATTTGTTTTGCCAAACTTCAAGAATCATTGAGATTGCTCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCAGGTTTTCATGACCAAGAAGCGGACCCGTGACAACAAATCGGTCATGAGCGAGTTCAAGGGGGGCGATTTGAACAAGTACACCGCGAAGACTTATGCCATTCAAAATGGAAACGAGGTTTTTGGAGGTTAGTTCTGGTTGTGGGCAACGGTAGAAATTATCAGTGTGAAGGTATTGATCAGAACACAGAAAATGTGAACGTGCAGGTTTAATATTAGTTCAGGAGCAATTGAGCATAAATAATATGAAGGAAATAGTTTTTGAAGGAAGTGTTTTACCACACTGGGAAATAAAGATTTGAACTTTTGATTTTTCATACCCAGGTATAGTTTTTTATCGTAATTTCTTATCTTAATTTCTAAAAGAGGTATTGAAAATCTGTCAATTGATGAAATGTCATAATATCATCAAAATTATATCAGTTTACAGATTTTTAGTACCTCTTATAGAAATTAAGATAATTGATCTCAAAGCGCAGGTGGCCTTCGATTAGAGAGTTTACGGTATTTGTTTTGCCAAACTTCAAGAATCATTGAGATTGCTCAGTGGAGAAATAAAAAAAACACACGTTGCATTTGGAAGAAAAACAATTTTGTGGTCTGGATTTTATGATTTTCACGGGGGATATAAAAAGAAAAACACTTTGTAACATTCTTTTTGCTTCGAGAATACACTGGAAACTGGAACATTATGCTTTGAAACTTCAAGAATCCCTCACAGGTTTTTAAAAAATTCACTCAATCCGCCTGATGTTTCATATTTTCATTAATTTGTTCTACTTGGTTTCTCATTTATCATCTAGAATTCTTATTGTCATCCGCACGTCATTGGCCAATAGATGGACACCAACCGCCACCACCTTCGCTTCGTTTTTCTTCATTGTATCTGCTAACTTCCGTATGCAATTCATTGAATGAATAATTCAAAAAGGACCAATCGGATTTTTATGCCTCATGTGAAGATAGTTGGGATTTTTGTCTTGACAATGTATGAAAA</canonical>
            <polymorphic>TTTTCAGGTTTTCATGACCAAGAAGCGGACCCGTGACAACAAATCGGTCATGAGCGAGTTCAAGGGGGGCGATTTGAACAAGTACACCGCGAAGACTTATGCCATTCAAAATGGAAACGAGGTTTTTGGAGGTTAGTTCTGGTTGTGGGCAACGGTAGAAATTATCAGTGTGAAGGTATTGATCAGAACACAGAAAATGTGAACGTGCAGGTTTAATATTAGTTCAGGAGCAATTGAGCATAAATAATATGAAGGAAATAGTTTTTGAAGGAAGTGTTTTACCACACTGGGAAATAAAGATTTGAACTTTTGATTTTTCATACCCAGGTATAGTTTTTTATCGTAATTTCTTATCTTAATTTCTAAAAGAGGTATTGAAAATCTGTCAATTGATGAAATGTCATAATATCATCAAAATTATATCAGTTTACAGATTTTTAGTACCTCTTATAGAAATTAAGATAATTGATCTCAAAGCGCAGGTGGCCTTCGATTAGAGWGTTTACGGTATTTGTTTTGCCAAACTTCAAGAATCATTGAGATTGCTCAGTGGAGAAATAAAAAAAACACACGTTGCATTTGGAAGAAAAACAATTTTGTGGTCTGGATTTTATGATTTTCACGGGGGATATAAAAAGAAAAACACTTTGTAACATTCTTTTTGCTTCGAGAATACACTGGAAACTGGAACATTATGCTTTGAAACTTCAAGAATCCCTCACAGGTTTTTAAAAAATTCACTCAATCCGCCTGATGTTTCATATTTTCATTAATTTGTTCTACTTGGTTTCTCATTTATCATCTAGAATTCTTATTGTCATCCGCACGTCATTGGCCAATAGATGGACACCAACCGCCACCACCTTCGCTTCGTTTTTCTTCATTGTATCTGCTAACTTCCGTATGCAATTCATTGAATGAATAATTCAAAAAGGACCAATCGGATTTTTATGCCTCATGTGAAGATAGTTGGGATTTTTGTCTTGACAATGTATGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTTCATACCCAGGTATAGTT</pcr_primer_p1>
		<pcr_primer_p2>TTATTTCTCCACTGAGCAATCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATTTTTCATACCCAGGTATAGTTTTTTATCGTAATTTCTTATCTTAATTTCTAAAAGAGGTATTGAAAATCTGTCAATTGATGAAATGTCATAATATCATCAAAATTATATCAGTTTACAGATTTTTAGTACCTCTTATAGAAATTAAGATAATTGATCTCAAAGCGCAGGTGGCCTTCGATTAGAGAGTTTACGGTATTTGTTTTGCCAAACTTCAAGAATCATTGAGATTGCTCAGTGGAGAAATAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTTCATACCCAGGTATAGTTTTTTATCGTAATTTCTTATCTTAATTTCTAAAAGAGGTATTGAAAATCTGTCAATTGATGAAATGTCATAATATCATCAAAATTATATCAGTTTACAGATTTTTAGTACCTCTTATAGAAATTAAGATAATTGATCTCAAAGCGCAGGTGGCCTTCGATTAGAGWGTTTACGGTATTTGTTTTGCCAAACTTCAAGAATCATTGAGATTGCTCAGTGGAGAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10625</snp_id>
        <super_contig>c005400932.Contig1</super_contig>
        <contig_pos>45425</contig_pos>
        <strand></strand>
        <context>GAATTTTTTT[C/T]CGAAAACCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAATAGCATTATTTTTTGCTCCTGACCTTCCGAGCTTTGGAATTTTTTT</left_flank>
        <right_flank>CGAAAACCTTTTACGTTTTAAAAAAATCTATACACTTTCTTTTTTTCCCA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAGGAGCGGGTGCTTCGGAGCGCCACCCAAAATGGAAAATAATGTATTTCTGCTTCAGAGACATTTGATAAAAAAATTTAGTTCCCTTTTAGAAGCTTATTGAAAACTTATCCTAACGTTTAGATCCCTTTCCGAGTTGTTTCTTGTTCCAGTTTCAAAAAATACAAATCGAAGAAAAACAATAATACCATTGGAAATATTTTTAAGCCCAAAAAATTTACTTAGTAAGCAAATTTTGTTTTCAAAGTTTTTTTCCCTAATCACCCAGTAGCTGGAAATTCAGAAACTTTGTTAATTTTTTTCAGAACAAAGTAAAACCATTCTGCTAAAATCCTTGAACACTGAAACTTCTTTTGGGTACTCTTTTTCTTTTTGAACTGCTTTTTTAGGGTCAAAATAGTTGTTTTGGGCCTTTCCGAAAAAAAACCTAAACAAGGTTATCTTCTCAGAATAGCATTATTTTTTGCTCCTGACCTTCCGAGCTTTGGAATTTTTTTCCGAAAACCTTTTACGTTTTAAAAAAATCTATACACTTTCTTTTTTTCCCAAAACATTCCAATTTCATCGTCCCATCATCTTCCCATCTATCTGATGTGCCAGATTTTGAGACCTCAAAAGGTGACTTGACTATTTTTCATATGCCATCCTCTCCTCCCCAAATAGGGCATCCTGCTCATAAATATGTAGATTTTCTTCTTTTCCGGTGGAAGGAGACCGGAGAAAAAGCAGATGGAATTCAGTAGAGCACGATGAACTGTGATTCTTTCCGTGGCGTCCCCCAACAGTGTCTCAAACATATGTTTTGCGTGTTCCGGAAAACGAGACAACGACACCATGTGTTTCAAGACTCATCAGAAGAAAATACTCTTTTCAAAATGCGCTGATTTATGTCGAATTAGTTTTGTTTTGTTTTGTTTCTAAGCCGGTGCAATGTCAGTCTCTGTTTTTCCTTACGCGTTCCCAGTAACAAAAAAGGCTACTTGATGATGTTTTTTCTG</canonical>
            <polymorphic>TTTAGGAGCGGGTGCTTCGGAGCGCCACCCAAAATGGAAAATAATGTATTTCTGCTTCAGAGACATTTGATAAAAAAATTTAGTTCCCTTTTAGAAGCTTATTGAAAACTTATCCTAACGTTTAGATCCCTTTCCGAGTTGTTTCTTGTTCCAGTTTCAAAAAATACAAATCGAAGAAAAACAATAATACCATTGGAAATATTTTTAAGCCCAAAAAATTTACTTAGTAAGCAAATTTTGTTTTCAAAGTTTTTTTCCCTAATCACCCAGTAGCTGGAAATTCAGAAACTTTGTTAATTTTTTTCAGAACAAAGTAAAACCATTCTGCTAAAATCCTTGAACACTGAAACTTCTTTTGGGTACTCTTTTTCTTTTTGAACTGCTTTTTTAGGGTCAAAATAGTTGTTTTGGGCCTTTCCGAAAAAAAACCTAAACAAGGTTATCTTCTCAGAATAGCATTATTTTTTGCTCCTGACCTTCCGAGCTTTGGAATTTTTTTYCGAAAACCTTTTACGTTTTAAAAAAATCTATACACTTTCTTTTTTTCCCAAAACATTCCAATTTCATCGTCCCATCATCTTCCCATCTATCTGATGTGCCAGATTTTGAGACCTCAAAAGGTGACTTGACTATTTTTCATATGCCATCCTCTCCTCCCCAAATAGGGCATCCTGCTCATAAATATGTAGATTTTCTTCTTTTCCGGTGGAAGGAGACCGGAGAAAAAGCAGATGGAATTCAGTAGAGCACGATGAACTGTGATTCTTTCCGTGGCGTCCCCCAACAGTGTCTCAAACATATGTTTTGCGTGTTCCGGAAAACGAGACAACGACACCATGTGTTTCAAGACTCATCAGAAGAAAATACTCTTTTCAAAATGCGCTGATTTATGTCGAATTAGTTTTGTTTTGTTTTGTTTCTAAGCCGGTGCAATGTCAGTCTCTGTTTTTCCTTACGCGTTCCCAGTAACAAAAAAGGCTACTTGATGATGTTTTTTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>264 149 144 113 91 76 40 31 31 22 20 19</canonical_bands>
                <polymorphic_bands>264 149 144 113 111 76 40 31 31 22 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTCTTTTGGGTACTCTTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CACATCAGATAGATGGGAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTCTTTTGGGTACTCTTTTTCTTTTTGAACTGCTTTTTTAGGGTCAAAATAGTTGTTTTGGGCCTTTCCGAAAAAAAACCTAAACAAGGTTATCTTCTCAGAATAGCATTATTTTTTGCTCCTGACCTTCCGAGCTTTGGAATTTTTTTCCGAAAACCTTTTACGTTTTAAAAAAATCTATACACTTTCTTTTTTTCCCAAAACATTCCAATTTCATCGTCCCATCATCTTCCCATCTATCTGATGTG</canonical_amplicon>
		<polymorphic_amplicon>ACTTCTTTTGGGTACTCTTTTTCTTTTTGAACTGCTTTTTTAGGGTCAAAATAGTTGTTTTGGGCCTTTCCGAAAAAAAACCTAAACAAGGTTATCTTCTCAGAATAGCATTATTTTTTGCTCCTGACCTTCCGAGCTTTGGAATTTTTTTYCGAAAACCTTTTACGTTTTAAAAAAATCTATACACTTTCTTTTTTTCCCAAAACATTCCAATTTCATCGTCCCATCATCTTCCCATCTATCTGATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10626</snp_id>
        <super_contig>c005400932.Contig1</super_contig>
        <contig_pos>44968</contig_pos>
        <strand>+</strand>
        <context>AATGGAAAAT[A/G]ATGTATTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGAGGATTTAGGAGCGGGTGCTTCGGAGCGCCACCCAAAATGGAAAAT</left_flank>
        <right_flank>ATGTATTTCTGCTTCAGAGACATTTGATAAAAAAATTTAGTTCCCTTTTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTTTCTCTATATTTTTATTTTTTGAATTTTTCTAACACCGGTGTGGTCCAAAATTTTGAGAGGATGCTTCTTTCTTCTTTTTACTTTCCTACTTTGCTTTCTTCGCTACCAGAAAAAGCATAAGTGAATTAAGTCAGTGTACAGATTCGATTACTTTCCTTTCTACCACCCCTCCGCACTCACTTCCATTTCCACTACGCTCATTTCTACAAACCAAACACAAATCCACTTCATTTTTCCTCTCAGTCCACCACACTATCAACACCAACTTTTGCAATTTGTTCACCCTGGGTCCAGTGGGCAGCATCATCGCACATGGAACATGGCTGATTCGGCCAGCTACTTACCCTCTCATAATCTTTGTTTCTTGTTTTCCGTTTCCTTCTTTTTTTTGGAGCGCCAACAATATTTGGTTTTCAACATGCGCTTCGGTTTTTCCTGATATGAAAGAGGATTTAGGAGCGGGTGCTTCGGAGCGCCACCCAAAATGGAAAATAATGTATTTCTGCTTCAGAGACATTTGATAAAAAAATTTAGTTCCCTTTTAGAAGCTTATTGAAAACTTATCCTAACGTTTAGATCCCTTTCCGAGTTGTTTCTTGTTCCAGTTTCAAAAAATACAAATCGAAGAAAAACAATAATACCATTGGAAATATTTTTAAGCCCAAAAAATTTACTTAGTAAGCAAATTTTGTTTTCAAAGTTTTTTTCCCTAATCACCCAGTAGCTGGAAATTCAGAAACTTTGTTAATTTTTTTCAGAACAAAGTAAAACCATTCTGCTAAAATCCTTGAACACTGAAACTTCTTTTGGGTACTCTTTTTCTTTTTGAACTGCTTTTTTAGGGTCAAAATAGTTGTTTTGGGCCTTTCCGAAAAAAAACCTAAACAAGGTTATCTTCTCAGAATAGCATTATTTTTTGCTCCTGACCTTCCGAGCTTTGGAATTTTTTTCCGAAAACCTTTTACGTTTTAAAAAAATCTATACACTTTCTTTT</canonical>
            <polymorphic>GTTTTTTCTCTATATTTTTATTTTTTGAATTTTTCTAACACCGGTGTGGTCCAAAATTTTGAGAGGATGCTTCTTTCTTCTTTTTACTTTCCTACTTTGCTTTCTTCGCTACCAGAAAAAGCATAAGTGAATTAAGTCAGTGTACAGATTCGATTACTTTCCTTTCTACCACCCCTCCGCACTCACTTCCATTTCCACTACGCTCATTTCTACAAACCAAACACAAATCCACTTCATTTTTCCTCTCAGTCCACCACACTATCAACACCAACTTTTGCAATTTGTTCACCCTGGGTCCAGTGGGCAGCATCATCGCACATGGAACATGGCTGATTCGGCCAGCTACTTACCCTCTCATAATCTTTGTTTCTTGTTTTCCGTTTCCTTCTTTTTTTTGGAGCGCCAACAATATTTGGTTTTCAACATGCGCTTCGGTTTTTCCTGATATGAAAGAGGATTTAGGAGCGGGTGCTTCGGAGCGCCACCCAAAATGGAAAATRATGTATTTCTGCTTCAGAGACATTTGATAAAAAAATTTAGTTCCCTTTTAGAAGCTTATTGAAAACTTATCCTAACGTTTAGATCCCTTTCCGAGTTGTTTCTTGTTCCAGTTTCAAAAAATACAAATCGAAGAAAAACAATAATACCATTGGAAATATTTTTAAGCCCAAAAAATTTACTTAGTAAGCAAATTTTGTTTTCAAAGTTTTTTTCCCTAATCACCCAGTAGCTGGAAATTCAGAAACTTTGTTAATTTTTTTCAGAACAAAGTAAAACCATTCTGCTAAAATCCTTGAACACTGAAACTTCTTTTGGGTACTCTTTTTCTTTTTGAACTGCTTTTTTAGGGTCAAAATAGTTGTTTTGGGCCTTTCCGAAAAAAAACCTAAACAAGGTTATCTTCTCAGAATAGCATTATTTTTTGCTCCTGACCTTCCGAGCTTTGGAATTTTTTTCCGAAAACCTTTTACGTTTTAAAAAAATCTATACACTTTCTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGCTACTTACCCTCTCATAAT</pcr_primer_p1>
		<pcr_primer_p2>AGGGATCTAAACGTTAGGATAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAGCTACTTACCCTCTCATAATCTTTGTTTCTTGTTTTCCGTTTCCTTCTTTTTTTTGGAGCGCCAACAATATTTGGTTTTCAACATGCGCTTCGGTTTTTCCTGATATGAAAGAGGATTTAGGAGCGGGTGCTTCGGAGCGCCACCCAAAATGGAAAATAATGTATTTCTGCTTCAGAGACATTTGATAAAAAAATTTAGTTCCCTTTTAGAAGCTTATTGAAAACTTATCCTAACGTTTAGATCCCT</canonical_amplicon>
		<polymorphic_amplicon>CCAGCTACTTACCCTCTCATAATCTTTGTTTCTTGTTTTCCGTTTCCTTCTTTTTTTTGGAGCGCCAACAATATTTGGTTTTCAACATGCGCTTCGGTTTTTCCTGATATGAAAGAGGATTTAGGAGCGGGTGCTTCGGAGCGCCACCCAAAATGGAAAATRATGTATTTCTGCTTCAGAGACATTTGATAAAAAAATTTAGTTCCCTTTTAGAAGCTTATTGAAAACTTATCCTAACGTTTAGATCCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10627</snp_id>
        <super_contig>c005400932.Contig1</super_contig>
        <contig_pos>53299</contig_pos>
        <strand>+</strand>
        <context>GGTACGCTTC[C/T]TTTCCGCTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAACAAGAAGAAAAAAGAAAAACGACGGCACAAAAAAAGGGTACGCTTC</left_flank>
        <right_flank>TTTCCGCTGTCAAGAAAAAAGTCTGTTTTATTCATCAAATCCGTCGAGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAGCAGCACAGTTGATTGGCAAATTTTCAGGCCAACGCATAGATTTATTATCAGGTTAGTCAATTTTCTTATTTTATTACTCTTTCTCTTTTTTGATCCAATACACTATCCTAACCAGATGTTTTTTAAGACGGCAATAACATATCAAGTTTATTATGTGTTGATTAGCTTGGTGGCCACTCTGAAGCCACACAAAAATCTGTAGCTCTTCTTTTTAGTCTCGAGCACTAGTGAGCCGCTGTAGTGAAAAGAATCTAAGCATCTACAAAAAACAAGTCTAACCGATAATCATTGCTATTTTTTCGAAACCATTAATTTGGTACGGTGCCCTCAATTAGTTGTCAAAAATTGTGACTGAACTTACCTAACTCACAACTGGGAAAATTAATTCTCATCATCTTTTGTACCCATGCCGTCACCAGCATCCGTAATAGAACTTTCTTTTTTTAACAAGAAGAAAAAAGAAAAACGACGGCACAAAAAAAGGGTACGCTTCCTTTCCGCTGTCAAGAAAAAAGTCTGTTTTATTCATCAAATCCGTCGAGGAGTTACTTTTCTCGTCTATTTTTCCTGCTTTCCTTGAGATGTGATAGCGTGATGGGATAACAATTTCAAGACGTTGTAGCAGTGCCCTTTTAGGAGAAAGATCTGTGTTGCTTACTCTGCAGAAGACGGGGAAAGGATGAGAAGATGGGAATAAGTTAATGAGGCTAGGAAGAAGCAACTCAAGAGGATAAGGGTACTTTCTTTCTGTGTTGTGAAAAATCCAGAAGAAGTTCACATGGAAAAACATTCTGCAAAACGTCATTATCCATTTCCTCTTCAGTCATTTGAAAATAGTACATATTTTATTTTTCAAACTTCTTCCAACTTTTCCTGAGCTCTCCCGCAAGGTTGATTCAATTGGTGTACATCCTTTTTTCCATAACGCACAACTAACACATGAAACACATCCTTCACGCGTTATGTGTTTTTGCAACTCGCGCCCCGTAAGTTT</canonical>
            <polymorphic>TTGAAGCAGCACAGTTGATTGGCAAATTTTCAGGCCAACGCATAGATTTATTATCAGGTTAGTCAATTTTCTTATTTTATTACTCTTTCTCTTTTTTGATCCAATACACTATCCTAACCAGATGTTTTTTAAGACGGCAATAACATATCAAGTTTATTATGTGTTGATTAGCTTGGTGGCCACTCTGAAGCCACACAAAAATCTGTAGCTCTTCTTTTTAGTCTCGAGCACTAGTGAGCCGCTGTAGTGAAAAGAATCTAAGCATCTACAAAAAACAAGTCTAACCGATAATCATTGCTATTTTTTCGAAACCATTAATTTGGTACGGTGCCCTCAATTAGTTGTCAAAAATTGTGACTGAACTTACCTAACTCACAACTGGGAAAATTAATTCTCATCATCTTTTGTACCCATGCCGTCACCAGCATCCGTAATAGAACTTTCTTTTTTTAACAAGAAGAAAAAAGAAAAACGACGGCACAAAAAAAGGGTACGCTTCYTTTCCGCTGTCAAGAAAAAAGTCTGTTTTATTCATCAAATCCGTCGAGGAGTTACTTTTCTCGTCTATTTTTCCTGCTTTCCTTGAGATGTGATAGCGTGATGGGATAACAATTTCAAGACGTTGTAGCAGTGCCCTTTTAGGAGAAAGATCTGTGTTGCTTACTCTGCAGAAGACGGGGAAAGGATGAGAAGATGGGAATAAGTTAATGAGGCTAGGAAGAAGCAACTCAAGAGGATAAGGGTACTTTCTTTCTGTGTTGTGAAAAATCCAGAAGAAGTTCACATGGAAAAACATTCTGCAAAACGTCATTATCCATTTCCTCTTCAGTCATTTGAAAATAGTACATATTTTATTTTTCAAACTTCTTCCAACTTTTCCTGAGCTCTCCCGCAAGGTTGATTCAATTGGTGTACATCCTTTTTTCCATAACGCACAACTAACACATGAAACACATCCTTCACGCGTTATGTGTTTTTGCAACTCGCGCCCCGTAAGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAACTCACAACTGGGAAAATTA</pcr_primer_p1>
		<pcr_primer_p2>CTTGAAATTGTTATCCCATCAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTAACTCACAACTGGGAAAATTAATTCTCATCATCTTTTGTACCCATGCCGTCACCAGCATCCGTAATAGAACTTTCTTTTTTTAACAAGAAGAAAAAAGAAAAACGACGGCACAAAAAAAGGGTACGCTTCCTTTCCGCTGTCAAGAAAAAAGTCTGTTTTATTCATCAAATCCGTCGAGGAGTTACTTTTCTCGTCTATTTTTCCTGCTTTCCTTGAGATGTGATAGCGTGATGGGATAACAATTTCAAG</canonical_amplicon>
		<polymorphic_amplicon>CTAACTCACAACTGGGAAAATTAATTCTCATCATCTTTTGTACCCATGCCGTCACCAGCATCCGTAATAGAACTTTCTTTTTTTAACAAGAAGAAAAAAGAAAAACGACGGCACAAAAAAAGGGTACGCTTCYTTTCCGCTGTCAAGAAAAAAGTCTGTTTTATTCATCAAATCCGTCGAGGAGTTACTTTTCTCGTCTATTTTTCCTGCTTTCCTTGAGATGTGATAGCGTGATGGGATAACAATTTCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10628</snp_id>
        <super_contig>c005400932.Contig1</super_contig>
        <contig_pos>53448</contig_pos>
        <strand>+</strand>
        <context>TTAGGAGAAA[A/G]ATCTGTGTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATGGGATAACAATTTCAAGACGTTGTAGCAGTGCCCTTTTAGGAGAAA</left_flank>
        <right_flank>ATCTGTGTTGCTTACTCTGCAGAAGACGGGGAAAGGATGAGAAGATGGGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTTTATTATGTGTTGATTAGCTTGGTGGCCACTCTGAAGCCACACAAAAATCTGTAGCTCTTCTTTTTAGTCTCGAGCACTAGTGAGCCGCTGTAGTGAAAAGAATCTAAGCATCTACAAAAAACAAGTCTAACCGATAATCATTGCTATTTTTTCGAAACCATTAATTTGGTACGGTGCCCTCAATTAGTTGTCAAAAATTGTGACTGAACTTACCTAACTCACAACTGGGAAAATTAATTCTCATCATCTTTTGTACCCATGCCGTCACCAGCATCCGTAATAGAACTTTCTTTTTTTAACAAGAAGAAAAAAGAAAAACGACGGCACAAAAAAAGGGTACGCTTCCTTTCCGCTGTCAAGAAAAAAGTCTGTTTTATTCATCAAATCCGTCGAGGAGTTACTTTTCTCGTCTATTTTTCCTGCTTTCCTTGAGATGTGATAGCGTGATGGGATAACAATTTCAAGACGTTGTAGCAGTGCCCTTTTAGGAGAAAGATCTGTGTTGCTTACTCTGCAGAAGACGGGGAAAGGATGAGAAGATGGGAATAAGTTAATGAGGCTAGGAAGAAGCAACTCAAGAGGATAAGGGTACTTTCTTTCTGTGTTGTGAAAAATCCAGAAGAAGTTCACATGGAAAAACATTCTGCAAAACGTCATTATCCATTTCCTCTTCAGTCATTTGAAAATAGTACATATTTTATTTTTCAAACTTCTTCCAACTTTTCCTGAGCTCTCCCGCAAGGTTGATTCAATTGGTGTACATCCTTTTTTCCATAACGCACAACTAACACATGAAACACATCCTTCACGCGTTATGTGTTTTTGCAACTCGCGCCCCGTAAGTTTTCATCCTTCGCACACCTTCTCTTTCCATGCGTTTTCCAACCGGAACGGCCCGTTTCCGCACTCTCAGGTAGCAAAAACAAGAGCACGTTGGGATGTTTACCACAAGGAAGAAAAAAAAATAGAAAGAGTAGCATAAGCTGAAGATGAGT</canonical>
            <polymorphic>AAGTTTATTATGTGTTGATTAGCTTGGTGGCCACTCTGAAGCCACACAAAAATCTGTAGCTCTTCTTTTTAGTCTCGAGCACTAGTGAGCCGCTGTAGTGAAAAGAATCTAAGCATCTACAAAAAACAAGTCTAACCGATAATCATTGCTATTTTTTCGAAACCATTAATTTGGTACGGTGCCCTCAATTAGTTGTCAAAAATTGTGACTGAACTTACCTAACTCACAACTGGGAAAATTAATTCTCATCATCTTTTGTACCCATGCCGTCACCAGCATCCGTAATAGAACTTTCTTTTTTTAACAAGAAGAAAAAAGAAAAACGACGGCACAAAAAAAGGGTACGCTTCCTTTCCGCTGTCAAGAAAAAAGTCTGTTTTATTCATCAAATCCGTCGAGGAGTTACTTTTCTCGTCTATTTTTCCTGCTTTCCTTGAGATGTGATAGCGTGATGGGATAACAATTTCAAGACGTTGTAGCAGTGCCCTTTTAGGAGAAARATCTGTGTTGCTTACTCTGCAGAAGACGGGGAAAGGATGAGAAGATGGGAATAAGTTAATGAGGCTAGGAAGAAGCAACTCAAGAGGATAAGGGTACTTTCTTTCTGTGTTGTGAAAAATCCAGAAGAAGTTCACATGGAAAAACATTCTGCAAAACGTCATTATCCATTTCCTCTTCAGTCATTTGAAAATAGTACATATTTTATTTTTCAAACTTCTTCCAACTTTTCCTGAGCTCTCCCGCAAGGTTGATTCAATTGGTGTACATCCTTTTTTCCATAACGCACAACTAACACATGAAACACATCCTTCACGCGTTATGTGTTTTTGCAACTCGCGCCCCGTAAGTTTTCATCCTTCGCACACCTTCTCTTTCCATGCGTTTTCCAACCGGAACGGCCCGTTTCCGCACTCTCAGGTAGCAAAAACAAGAGCACGTTGGGATGTTTACCACAAGGAAGAAAAAAAAATAGAAAGAGTAGCATAAGCTGAAGATGAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGATGGGATAACAATTTCAAG</pcr_primer_p1>
		<pcr_primer_p2>CTATTTTCAAATGACTGAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTGATGGGATAACAATTTCAAGACGTTGTAGCAGTGCCCTTTTAGGAGAAAGATCTGTGTTGCTTACTCTGCAGAAGACGGGGAAAGGATGAGAAGATGGGAATAAGTTAATGAGGCTAGGAAGAAGCAACTCAAGAGGATAAGGGTACTTTCTTTCTGTGTTGTGAAAAATCCAGAAGAAGTTCACATGGAAAAACATTCTGCAAAACGTCATTATCCATTTCCTCTTCAGTCATTTGAAAATAG</canonical_amplicon>
		<polymorphic_amplicon>GTGATGGGATAACAATTTCAAGACGTTGTAGCAGTGCCCTTTTAGGAGAAARATCTGTGTTGCTTACTCTGCAGAAGACGGGGAAAGGATGAGAAGATGGGAATAAGTTAATGAGGCTAGGAAGAAGCAACTCAAGAGGATAAGGGTACTTTCTTTCTGTGTTGTGAAAAATCCAGAAGAAGTTCACATGGAAAAACATTCTGCAAAACGTCATTATCCATTTCCTCTTCAGTCATTTGAAAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10629</snp_id>
        <super_contig>c005400932.Contig1</super_contig>
        <contig_pos>53468</contig_pos>
        <strand>+</strand>
        <context>GCTTACTCTG[A/C]AGAAGACGGG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GACGTTGTAGCAGTGCCCTTTTAGGAGAAAGATCTGTGTTGCTTACTCTG</left_flank>
        <right_flank>AGAAGACGGGGAAAGGATGAGAAGATGGGAATAAGTTAATGAGGCTAGGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTTGGTGGCCACTCTGAAGCCACACAAAAATCTGTAGCTCTTCTTTTTAGTCTCGAGCACTAGTGAGCCGCTGTAGTGAAAAGAATCTAAGCATCTACAAAAAACAAGTCTAACCGATAATCATTGCTATTTTTTCGAAACCATTAATTTGGTACGGTGCCCTCAATTAGTTGTCAAAAATTGTGACTGAACTTACCTAACTCACAACTGGGAAAATTAATTCTCATCATCTTTTGTACCCATGCCGTCACCAGCATCCGTAATAGAACTTTCTTTTTTTAACAAGAAGAAAAAAGAAAAACGACGGCACAAAAAAAGGGTACGCTTCCTTTCCGCTGTCAAGAAAAAAGTCTGTTTTATTCATCAAATCCGTCGAGGAGTTACTTTTCTCGTCTATTTTTCCTGCTTTCCTTGAGATGTGATAGCGTGATGGGATAACAATTTCAAGACGTTGTAGCAGTGCCCTTTTAGGAGAAAGATCTGTGTTGCTTACTCTGCAGAAGACGGGGAAAGGATGAGAAGATGGGAATAAGTTAATGAGGCTAGGAAGAAGCAACTCAAGAGGATAAGGGTACTTTCTTTCTGTGTTGTGAAAAATCCAGAAGAAGTTCACATGGAAAAACATTCTGCAAAACGTCATTATCCATTTCCTCTTCAGTCATTTGAAAATAGTACATATTTTATTTTTCAAACTTCTTCCAACTTTTCCTGAGCTCTCCCGCAAGGTTGATTCAATTGGTGTACATCCTTTTTTCCATAACGCACAACTAACACATGAAACACATCCTTCACGCGTTATGTGTTTTTGCAACTCGCGCCCCGTAAGTTTTCATCCTTCGCACACCTTCTCTTTCCATGCGTTTTCCAACCGGAACGGCCCGTTTCCGCACTCTCAGGTAGCAAAAACAAGAGCACGTTGGGATGTTTACCACAAGGAAGAAAAAAAAATAGAAAGAGTAGCATAAGCTGAAGATGAGTTCAAAGGAATTGCTCAGTTG</canonical>
            <polymorphic>AGCTTGGTGGCCACTCTGAAGCCACACAAAAATCTGTAGCTCTTCTTTTTAGTCTCGAGCACTAGTGAGCCGCTGTAGTGAAAAGAATCTAAGCATCTACAAAAAACAAGTCTAACCGATAATCATTGCTATTTTTTCGAAACCATTAATTTGGTACGGTGCCCTCAATTAGTTGTCAAAAATTGTGACTGAACTTACCTAACTCACAACTGGGAAAATTAATTCTCATCATCTTTTGTACCCATGCCGTCACCAGCATCCGTAATAGAACTTTCTTTTTTTAACAAGAAGAAAAAAGAAAAACGACGGCACAAAAAAAGGGTACGCTTCCTTTCCGCTGTCAAGAAAAAAGTCTGTTTTATTCATCAAATCCGTCGAGGAGTTACTTTTCTCGTCTATTTTTCCTGCTTTCCTTGAGATGTGATAGCGTGATGGGATAACAATTTCAAGACGTTGTAGCAGTGCCCTTTTAGGAGAAAGATCTGTGTTGCTTACTCTGMAGAAGACGGGGAAAGGATGAGAAGATGGGAATAAGTTAATGAGGCTAGGAAGAAGCAACTCAAGAGGATAAGGGTACTTTCTTTCTGTGTTGTGAAAAATCCAGAAGAAGTTCACATGGAAAAACATTCTGCAAAACGTCATTATCCATTTCCTCTTCAGTCATTTGAAAATAGTACATATTTTATTTTTCAAACTTCTTCCAACTTTTCCTGAGCTCTCCCGCAAGGTTGATTCAATTGGTGTACATCCTTTTTTCCATAACGCACAACTAACACATGAAACACATCCTTCACGCGTTATGTGTTTTTGCAACTCGCGCCCCGTAAGTTTTCATCCTTCGCACACCTTCTCTTTCCATGCGTTTTCCAACCGGAACGGCCCGTTTCCGCACTCTCAGGTAGCAAAAACAAGAGCACGTTGGGATGTTTACCACAAGGAAGAAAAAAAAATAGAAAGAGTAGCATAAGCTGAAGATGAGTTCAAAGGAATTGCTCAGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 424 39 34</canonical_bands>
                <polymorphic_bands>927 39 34</polymorphic_bands>
            </assay>
            <assay>
                <site>CTGCAG</site>
                <isoschizomers>
                    <enzyme>BloHII</enzyme>
                    <enzyme>BstMAI</enzyme>
                    <enzyme>PstI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>496 320 184</canonical_bands>
                <polymorphic_bands>816 184</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>499 190 179 132</canonical_bands>
                <polymorphic_bands>631 190 179</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATGGGATAACAATTTCAAGAC</pcr_primer_p1>
		<pcr_primer_p2>CTATTTTCAAATGACTGAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GATGGGATAACAATTTCAAGACGTTGTAGCAGTGCCCTTTTAGGAGAAAGATCTGTGTTGCTTACTCTGCAGAAGACGGGGAAAGGATGAGAAGATGGGAATAAGTTAATGAGGCTAGGAAGAAGCAACTCAAGAGGATAAGGGTACTTTCTTTCTGTGTTGTGAAAAATCCAGAAGAAGTTCACATGGAAAAACATTCTGCAAAACGTCATTATCCATTTCCTCTTCAGTCATTTGAAAATAG</canonical_amplicon>
		<polymorphic_amplicon>GATGGGATAACAATTTCAAGACGTTGTAGCAGTGCCCTTTTAGGAGAAAGATCTGTGTTGCTTACTCTGMAGAAGACGGGGAAAGGATGAGAAGATGGGAATAAGTTAATGAGGCTAGGAAGAAGCAACTCAAGAGGATAAGGGTACTTTCTTTCTGTGTTGTGAAAAATCCAGAAGAAGTTCACATGGAAAAACATTCTGCAAAACGTCATTATCCATTTCCTCTTCAGTCATTTGAAAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10630</snp_id>
        <super_contig>c005400932.Contig1</super_contig>
        <contig_pos>53494</contig_pos>
        <strand>+</strand>
        <context>GATGAGAAGA[A/T]GGGAATAAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAGATCTGTGTTGCTTACTCTGCAGAAGACGGGGAAAGGATGAGAAGA</left_flank>
        <right_flank>GGGAATAAGTTAATGAGGCTAGGAAGAAGCAACTCAAGAGGATAAGGGTA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAATCTGTAGCTCTTCTTTTTAGTCTCGAGCACTAGTGAGCCGCTGTAGTGAAAAGAATCTAAGCATCTACAAAAAACAAGTCTAACCGATAATCATTGCTATTTTTTCGAAACCATTAATTTGGTACGGTGCCCTCAATTAGTTGTCAAAAATTGTGACTGAACTTACCTAACTCACAACTGGGAAAATTAATTCTCATCATCTTTTGTACCCATGCCGTCACCAGCATCCGTAATAGAACTTTCTTTTTTTAACAAGAAGAAAAAAGAAAAACGACGGCACAAAAAAAGGGTACGCTTCCTTTCCGCTGTCAAGAAAAAAGTCTGTTTTATTCATCAAATCCGTCGAGGAGTTACTTTTCTCGTCTATTTTTCCTGCTTTCCTTGAGATGTGATAGCGTGATGGGATAACAATTTCAAGACGTTGTAGCAGTGCCCTTTTAGGAGAAAGATCTGTGTTGCTTACTCTGCAGAAGACGGGGAAAGGATGAGAAGATGGGAATAAGTTAATGAGGCTAGGAAGAAGCAACTCAAGAGGATAAGGGTACTTTCTTTCTGTGTTGTGAAAAATCCAGAAGAAGTTCACATGGAAAAACATTCTGCAAAACGTCATTATCCATTTCCTCTTCAGTCATTTGAAAATAGTACATATTTTATTTTTCAAACTTCTTCCAACTTTTCCTGAGCTCTCCCGCAAGGTTGATTCAATTGGTGTACATCCTTTTTTCCATAACGCACAACTAACACATGAAACACATCCTTCACGCGTTATGTGTTTTTGCAACTCGCGCCCCGTAAGTTTTCATCCTTCGCACACCTTCTCTTTCCATGCGTTTTCCAACCGGAACGGCCCGTTTCCGCACTCTCAGGTAGCAAAAACAAGAGCACGTTGGGATGTTTACCACAAGGAAGAAAAAAAAATAGAAAGAGTAGCATAAGCTGAAGATGAGTTCAAAGGAATTGCTCAGTTGATTTTCAAGAATCGCAAGGGAAAAAT</canonical>
            <polymorphic>CAAAAATCTGTAGCTCTTCTTTTTAGTCTCGAGCACTAGTGAGCCGCTGTAGTGAAAAGAATCTAAGCATCTACAAAAAACAAGTCTAACCGATAATCATTGCTATTTTTTCGAAACCATTAATTTGGTACGGTGCCCTCAATTAGTTGTCAAAAATTGTGACTGAACTTACCTAACTCACAACTGGGAAAATTAATTCTCATCATCTTTTGTACCCATGCCGTCACCAGCATCCGTAATAGAACTTTCTTTTTTTAACAAGAAGAAAAAAGAAAAACGACGGCACAAAAAAAGGGTACGCTTCCTTTCCGCTGTCAAGAAAAAAGTCTGTTTTATTCATCAAATCCGTCGAGGAGTTACTTTTCTCGTCTATTTTTCCTGCTTTCCTTGAGATGTGATAGCGTGATGGGATAACAATTTCAAGACGTTGTAGCAGTGCCCTTTTAGGAGAAAGATCTGTGTTGCTTACTCTGCAGAAGACGGGGAAAGGATGAGAAGAWGGGAATAAGTTAATGAGGCTAGGAAGAAGCAACTCAAGAGGATAAGGGTACTTTCTTTCTGTGTTGTGAAAAATCCAGAAGAAGTTCACATGGAAAAACATTCTGCAAAACGTCATTATCCATTTCCTCTTCAGTCATTTGAAAATAGTACATATTTTATTTTTCAAACTTCTTCCAACTTTTCCTGAGCTCTCCCGCAAGGTTGATTCAATTGGTGTACATCCTTTTTTCCATAACGCACAACTAACACATGAAACACATCCTTCACGCGTTATGTGTTTTTGCAACTCGCGCCCCGTAAGTTTTCATCCTTCGCACACCTTCTCTTTCCATGCGTTTTCCAACCGGAACGGCCCGTTTCCGCACTCTCAGGTAGCAAAAACAAGAGCACGTTGGGATGTTTACCACAAGGAAGAAAAAAAAATAGAAAGAGTAGCATAAGCTGAAGATGAGTTCAAAGGAATTGCTCAGTTGATTTTCAAGAATCGCAAGGGAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGGGATAACAATTTCAAGAC</pcr_primer_p1>
		<pcr_primer_p2>CTATTTTCAAATGACTGAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GATGGGATAACAATTTCAAGACGTTGTAGCAGTGCCCTTTTAGGAGAAAGATCTGTGTTGCTTACTCTGCAGAAGACGGGGAAAGGATGAGAAGATGGGAATAAGTTAATGAGGCTAGGAAGAAGCAACTCAAGAGGATAAGGGTACTTTCTTTCTGTGTTGTGAAAAATCCAGAAGAAGTTCACATGGAAAAACATTCTGCAAAACGTCATTATCCATTTCCTCTTCAGTCATTTGAAAATAG</canonical_amplicon>
		<polymorphic_amplicon>GATGGGATAACAATTTCAAGACGTTGTAGCAGTGCCCTTTTAGGAGAAAGATCTGTGTTGCTTACTCTGCAGAAGACGGGGAAAGGATGAGAAGAWGGGAATAAGTTAATGAGGCTAGGAAGAAGCAACTCAAGAGGATAAGGGTACTTTCTTTCTGTGTTGTGAAAAATCCAGAAGAAGTTCACATGGAAAAACATTCTGCAAAACGTCATTATCCATTTCCTCTTCAGTCATTTGAAAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10631</snp_id>
        <super_contig>c005400932.Contig1</super_contig>
        <contig_pos>53555</contig_pos>
        <strand>+</strand>
        <context>CTTTCTTTCT[A/G]TGTTGTGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATGAGGCTAGGAAGAAGCAACTCAAGAGGATAAGGGTACTTTCTTTCT</left_flank>
        <right_flank>TGTTGTGAAAAATCCAGAAGAAGTTCACATGGAAAAACATTCTGCAAAAC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTAAGCATCTACAAAAAACAAGTCTAACCGATAATCATTGCTATTTTTTCGAAACCATTAATTTGGTACGGTGCCCTCAATTAGTTGTCAAAAATTGTGACTGAACTTACCTAACTCACAACTGGGAAAATTAATTCTCATCATCTTTTGTACCCATGCCGTCACCAGCATCCGTAATAGAACTTTCTTTTTTTAACAAGAAGAAAAAAGAAAAACGACGGCACAAAAAAAGGGTACGCTTCCTTTCCGCTGTCAAGAAAAAAGTCTGTTTTATTCATCAAATCCGTCGAGGAGTTACTTTTCTCGTCTATTTTTCCTGCTTTCCTTGAGATGTGATAGCGTGATGGGATAACAATTTCAAGACGTTGTAGCAGTGCCCTTTTAGGAGAAAGATCTGTGTTGCTTACTCTGCAGAAGACGGGGAAAGGATGAGAAGATGGGAATAAGTTAATGAGGCTAGGAAGAAGCAACTCAAGAGGATAAGGGTACTTTCTTTCTGTGTTGTGAAAAATCCAGAAGAAGTTCACATGGAAAAACATTCTGCAAAACGTCATTATCCATTTCCTCTTCAGTCATTTGAAAATAGTACATATTTTATTTTTCAAACTTCTTCCAACTTTTCCTGAGCTCTCCCGCAAGGTTGATTCAATTGGTGTACATCCTTTTTTCCATAACGCACAACTAACACATGAAACACATCCTTCACGCGTTATGTGTTTTTGCAACTCGCGCCCCGTAAGTTTTCATCCTTCGCACACCTTCTCTTTCCATGCGTTTTCCAACCGGAACGGCCCGTTTCCGCACTCTCAGGTAGCAAAAACAAGAGCACGTTGGGATGTTTACCACAAGGAAGAAAAAAAAATAGAAAGAGTAGCATAAGCTGAAGATGAGTTCAAAGGAATTGCTCAGTTGATTTTCAAGAATCGCAAGGGAAAAATTAGCTCGGGTTTCGTTAAATCCCACTTGGCACTTCTTCCTCTCCGTTTTCCTTCGAAAGTT</canonical>
            <polymorphic>TCTAAGCATCTACAAAAAACAAGTCTAACCGATAATCATTGCTATTTTTTCGAAACCATTAATTTGGTACGGTGCCCTCAATTAGTTGTCAAAAATTGTGACTGAACTTACCTAACTCACAACTGGGAAAATTAATTCTCATCATCTTTTGTACCCATGCCGTCACCAGCATCCGTAATAGAACTTTCTTTTTTTAACAAGAAGAAAAAAGAAAAACGACGGCACAAAAAAAGGGTACGCTTCCTTTCCGCTGTCAAGAAAAAAGTCTGTTTTATTCATCAAATCCGTCGAGGAGTTACTTTTCTCGTCTATTTTTCCTGCTTTCCTTGAGATGTGATAGCGTGATGGGATAACAATTTCAAGACGTTGTAGCAGTGCCCTTTTAGGAGAAAGATCTGTGTTGCTTACTCTGCAGAAGACGGGGAAAGGATGAGAAGATGGGAATAAGTTAATGAGGCTAGGAAGAAGCAACTCAAGAGGATAAGGGTACTTTCTTTCTRTGTTGTGAAAAATCCAGAAGAAGTTCACATGGAAAAACATTCTGCAAAACGTCATTATCCATTTCCTCTTCAGTCATTTGAAAATAGTACATATTTTATTTTTCAAACTTCTTCCAACTTTTCCTGAGCTCTCCCGCAAGGTTGATTCAATTGGTGTACATCCTTTTTTCCATAACGCACAACTAACACATGAAACACATCCTTCACGCGTTATGTGTTTTTGCAACTCGCGCCCCGTAAGTTTTCATCCTTCGCACACCTTCTCTTTCCATGCGTTTTCCAACCGGAACGGCCCGTTTCCGCACTCTCAGGTAGCAAAAACAAGAGCACGTTGGGATGTTTACCACAAGGAAGAAAAAAAAATAGAAAGAGTAGCATAAGCTGAAGATGAGTTCAAAGGAATTGCTCAGTTGATTTTCAAGAATCGCAAGGGAAAAATTAGCTCGGGTTTCGTTAAATCCCACTTGGCACTTCTTCCTCTCCGTTTTCCTTCGAAAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>129 117 112 102 74 59 46 46 39 33 30 26 25 23 23 20 19 17 11 9 9 9 8 7 5 2</canonical_bands>
                <polymorphic_bands>129 117 112 107 74 59 46 46 39 33 30 26 25 23 23 20 19 17 11 9 9 9 8 7 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTAATGAGGCTAGGAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TCATGTGTTAGTTGTGCGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGTTAATGAGGCTAGGAAGAAGCAACTCAAGAGGATAAGGGTACTTTCTTTCTGTGTTGTGAAAAATCCAGAAGAAGTTCACATGGAAAAACATTCTGCAAAACGTCATTATCCATTTCCTCTTCAGTCATTTGAAAATAGTACATATTTTATTTTTCAAACTTCTTCCAACTTTTCCTGAGCTCTCCCGCAAGGTTGATTCAATTGGTGTACATCCTTTTTTCCATAACGCACAACTAACACATGA</canonical_amplicon>
		<polymorphic_amplicon>AAGTTAATGAGGCTAGGAAGAAGCAACTCAAGAGGATAAGGGTACTTTCTTTCTRTGTTGTGAAAAATCCAGAAGAAGTTCACATGGAAAAACATTCTGCAAAACGTCATTATCCATTTCCTCTTCAGTCATTTGAAAATAGTACATATTTTATTTTTCAAACTTCTTCCAACTTTTCCTGAGCTCTCCCGCAAGGTTGATTCAATTGGTGTACATCCTTTTTTCCATAACGCACAACTAACACATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10632</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>23361</contig_pos>
        <strand>+</strand>
        <context>ATTTTCCAGA[A/T]ATAACACTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTGTCTGGACTTACAAAATTGAATTTAGAATTCCTTCTGATTTTCCAGA</left_flank>
        <right_flank>ATAACACTTTTCAAATTCCTAGAATTTGGTTGAAATTTAAAATTATTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGGGACCTAAAGAATTGGGTGAATTTTGGCATGATGTCACAATGTTTCAACTTCCCCTTTTTTCGATGCAAATGAATCCTGGAACATTTTCCGTGTATCAAGTGGAAAATTCAAAAATATCATATTATCAAAATCAAATCATAGGTTGCTAGACGCTGCATAATTACATAGAACTTGGTATTTATCAAAAAGTATATTTGCTTCTAGAAGTTTCTTAGAATTCTATCTCAAAGATTTGTTTATGCTATACAAAGCTATGGAAGTTTTGTGCTCAAGTTTCTTGTTGTCCTAATTTTGAGCCAATTTTTCTCGTTTCATGTCAAAGATATGAAAAAGTAGAAAGTTGATAAATTGTTTCTGATATTATGATAAACAATTTATCAGTTGACTCAAAGTTAGCAGCTCTTCTATTACAGGTTTTACGGTTTTTAGGAAAGTCGGATCTTTGCTGTCTGGACTTACAAAATTGAATTTAGAATTCCTTCTGATTTTCCAGAAATAACACTTTTCAAATTCCTAGAATTTGGTTGAAATTTAAAATTATTTTTTCTCCCAATTTCAGCCTCACTGTTTTTTTATTTTCTCCCCATTAATCACCATTGTTTTGGTTATTTTTTCTCTCCCAATTTCCTTTCATCTGAAAGAAAAGTCACTCTGATTCTTCTTCCGGACGTCTTCTTGGTATTCCTTCTGGTGAAGAACACACAGAATTCGTAATTCGCTCTCCCAACTTTTTGAATTAATTGTCTCACACCAACCTGAATGCGAAAAAAGAGAAAATTCTACTCTTCCTTTTCTGAAACAGACACCAAAAATCCAAAGGATCCTCTCGCTTTTTATTTATTCCGGACACGGTGTGCCAACCGAGAACCTGCAGATATTTTTGAGCTTTGATTCTTTTTAGTCCTTTGAATCTTTTTGGACGTTAATAACAGGATTATATATTTTGATTCCCCTTTATTTCCTTTTATTTCTCCCTCAACCTAATTTCCTGTTTC</canonical>
            <polymorphic>AGAGGGACCTAAAGAATTGGGTGAATTTTGGCATGATGTCACAATGTTTCAACTTCCCCTTTTTTCGATGCAAATGAATCCTGGAACATTTTCCGTGTATCAAGTGGAAAATTCAAAAATATCATATTATCAAAATCAAATCATAGGTTGCTAGACGCTGCATAATTACATAGAACTTGGTATTTATCAAAAAGTATATTTGCTTCTAGAAGTTTCTTAGAATTCTATCTCAAAGATTTGTTTATGCTATACAAAGCTATGGAAGTTTTGTGCTCAAGTTTCTTGTTGTCCTAATTTTGAGCCAATTTTTCTCGTTTCATGTCAAAGATATGAAAAAGTAGAAAGTTGATAAATTGTTTCTGATATTATGATAAACAATTTATCAGTTGACTCAAAGTTAGCAGCTCTTCTATTACAGGTTTTACGGTTTTTAGGAAAGTCGGATCTTTGCTGTCTGGACTTACAAAATTGAATTTAGAATTCCTTCTGATTTTCCAGAWATAACACTTTTCAAATTCCTAGAATTTGGTTGAAATTTAAAATTATTTTTTCTCCCAATTTCAGCCTCACTGTTTTTTTATTTTCTCCCCATTAATCACCATTGTTTTGGTTATTTTTTCTCTCCCAATTTCCTTTCATCTGAAAGAAAAGTCACTCTGATTCTTCTTCCGGACGTCTTCTTGGTATTCCTTCTGGTGAAGAACACACAGAATTCGTAATTCGCTCTCCCAACTTTTTGAATTAATTGTCTCACACCAACCTGAATGCGAAAAAAGAGAAAATTCTACTCTTCCTTTTCTGAAACAGACACCAAAAATCCAAAGGATCCTCTCGCTTTTTATTTATTCCGGACACGGTGTGCCAACCGAGAACCTGCAGATATTTTTGAGCTTTGATTCTTTTTAGTCCTTTGAATCTTTTTGGACGTTAATAACAGGATTATATATTTTGATTCCCCTTTATTTCCTTTTATTTCTCCCTCAACCTAATTTCCTGTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTGTCTGGACTTACAAAAT</pcr_primer_p1>
		<pcr_primer_p2>ACCAGAAGGAATACCAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGCTGTCTGGACTTACAAAATTGAATTTAGAATTCCTTCTGATTTTCCAGAAATAACACTTTTCAAATTCCTAGAATTTGGTTGAAATTTAAAATTATTTTTTCTCCCAATTTCAGCCTCACTGTTTTTTTATTTTCTCCCCATTAATCACCATTGTTTTGGTTATTTTTTCTCTCCCAATTTCCTTTCATCTGAAAGAAAAGTCACTCTGATTCTTCTTCCGGACGTCTTCTTGGTATTCCTTCTGGT</canonical_amplicon>
		<polymorphic_amplicon>TGCTGTCTGGACTTACAAAATTGAATTTAGAATTCCTTCTGATTTTCCAGAWATAACACTTTTCAAATTCCTAGAATTTGGTTGAAATTTAAAATTATTTTTTCTCCCAATTTCAGCCTCACTGTTTTTTTATTTTCTCCCCATTAATCACCATTGTTTTGGTTATTTTTTCTCTCCCAATTTCCTTTCATCTGAAAGAAAAGTCACTCTGATTCTTCTTCCGGACGTCTTCTTGGTATTCCTTCTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10633</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>23374</contig_pos>
        <strand>+</strand>
        <context>AACACTTTTC[A/G]AATTCCTAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAAAATTGAATTTAGAATTCCTTCTGATTTTCCAGAAATAACACTTTTC</left_flank>
        <right_flank>AATTCCTAGAATTTGGTTGAAATTTAAAATTATTTTTTCTCCCAATTTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTGGGTGAATTTTGGCATGATGTCACAATGTTTCAACTTCCCCTTTTTTCGATGCAAATGAATCCTGGAACATTTTCCGTGTATCAAGTGGAAAATTCAAAAATATCATATTATCAAAATCAAATCATAGGTTGCTAGACGCTGCATAATTACATAGAACTTGGTATTTATCAAAAAGTATATTTGCTTCTAGAAGTTTCTTAGAATTCTATCTCAAAGATTTGTTTATGCTATACAAAGCTATGGAAGTTTTGTGCTCAAGTTTCTTGTTGTCCTAATTTTGAGCCAATTTTTCTCGTTTCATGTCAAAGATATGAAAAAGTAGAAAGTTGATAAATTGTTTCTGATATTATGATAAACAATTTATCAGTTGACTCAAAGTTAGCAGCTCTTCTATTACAGGTTTTACGGTTTTTAGGAAAGTCGGATCTTTGCTGTCTGGACTTACAAAATTGAATTTAGAATTCCTTCTGATTTTCCAGAAATAACACTTTTCAAATTCCTAGAATTTGGTTGAAATTTAAAATTATTTTTTCTCCCAATTTCAGCCTCACTGTTTTTTTATTTTCTCCCCATTAATCACCATTGTTTTGGTTATTTTTTCTCTCCCAATTTCCTTTCATCTGAAAGAAAAGTCACTCTGATTCTTCTTCCGGACGTCTTCTTGGTATTCCTTCTGGTGAAGAACACACAGAATTCGTAATTCGCTCTCCCAACTTTTTGAATTAATTGTCTCACACCAACCTGAATGCGAAAAAAGAGAAAATTCTACTCTTCCTTTTCTGAAACAGACACCAAAAATCCAAAGGATCCTCTCGCTTTTTATTTATTCCGGACACGGTGTGCCAACCGAGAACCTGCAGATATTTTTGAGCTTTGATTCTTTTTAGTCCTTTGAATCTTTTTGGACGTTAATAACAGGATTATATATTTTGATTCCCCTTTATTTCCTTTTATTTCTCCCTCAACCTAATTTCCTGTTTCGTCCGTATACCAT</canonical>
            <polymorphic>GAATTGGGTGAATTTTGGCATGATGTCACAATGTTTCAACTTCCCCTTTTTTCGATGCAAATGAATCCTGGAACATTTTCCGTGTATCAAGTGGAAAATTCAAAAATATCATATTATCAAAATCAAATCATAGGTTGCTAGACGCTGCATAATTACATAGAACTTGGTATTTATCAAAAAGTATATTTGCTTCTAGAAGTTTCTTAGAATTCTATCTCAAAGATTTGTTTATGCTATACAAAGCTATGGAAGTTTTGTGCTCAAGTTTCTTGTTGTCCTAATTTTGAGCCAATTTTTCTCGTTTCATGTCAAAGATATGAAAAAGTAGAAAGTTGATAAATTGTTTCTGATATTATGATAAACAATTTATCAGTTGACTCAAAGTTAGCAGCTCTTCTATTACAGGTTTTACGGTTTTTAGGAAAGTCGGATCTTTGCTGTCTGGACTTACAAAATTGAATTTAGAATTCCTTCTGATTTTCCAGAAATAACACTTTTCRAATTCCTAGAATTTGGTTGAAATTTAAAATTATTTTTTCTCCCAATTTCAGCCTCACTGTTTTTTTATTTTCTCCCCATTAATCACCATTGTTTTGGTTATTTTTTCTCTCCCAATTTCCTTTCATCTGAAAGAAAAGTCACTCTGATTCTTCTTCCGGACGTCTTCTTGGTATTCCTTCTGGTGAAGAACACACAGAATTCGTAATTCGCTCTCCCAACTTTTTGAATTAATTGTCTCACACCAACCTGAATGCGAAAAAAGAGAAAATTCTACTCTTCCTTTTCTGAAACAGACACCAAAAATCCAAAGGATCCTCTCGCTTTTTATTTATTCCGGACACGGTGTGCCAACCGAGAACCTGCAGATATTTTTGAGCTTTGATTCTTTTTAGTCCTTTGAATCTTTTTGGACGTTAATAACAGGATTATATATTTTGATTCCCCTTTATTTCCTTTTATTTCTCCCTCAACCTAATTTCCTGTTTCGTCCGTATACCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>251 233 177 111 86 70 35 11 10 9 7</canonical_bands>
                <polymorphic_bands>251 233 177 111 86 70 44 11 10 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTCTGGACTTACAAAATTGA</pcr_primer_p1>
		<pcr_primer_p2>ACCAGAAGGAATACCAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTGTCTGGACTTACAAAATTGAATTTAGAATTCCTTCTGATTTTCCAGAAATAACACTTTTCAAATTCCTAGAATTTGGTTGAAATTTAAAATTATTTTTTCTCCCAATTTCAGCCTCACTGTTTTTTTATTTTCTCCCCATTAATCACCATTGTTTTGGTTATTTTTTCTCTCCCAATTTCCTTTCATCTGAAAGAAAAGTCACTCTGATTCTTCTTCCGGACGTCTTCTTGGTATTCCTTCTGGT</canonical_amplicon>
		<polymorphic_amplicon>CTGTCTGGACTTACAAAATTGAATTTAGAATTCCTTCTGATTTTCCAGAAATAACACTTTTCRAATTCCTAGAATTTGGTTGAAATTTAAAATTATTTTTTCTCCCAATTTCAGCCTCACTGTTTTTTTATTTTCTCCCCATTAATCACCATTGTTTTGGTTATTTTTTCTCTCCCAATTTCCTTTCATCTGAAAGAAAAGTCACTCTGATTCTTCTTCCGGACGTCTTCTTGGTATTCCTTCTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10634</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>23606</contig_pos>
        <strand>+</strand>
        <context>TTTTGAATTA[A/T]TTGTCTCACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTGAAGAACACACAGAATTCGTAATTCGCTCTCCCAACTTTTTGAATTA</left_flank>
        <right_flank>TTGTCTCACACCAACCTGAATGCGAAAAAAGAGAAAATTCTACTCTTCCT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTATACAAAGCTATGGAAGTTTTGTGCTCAAGTTTCTTGTTGTCCTAATTTTGAGCCAATTTTTCTCGTTTCATGTCAAAGATATGAAAAAGTAGAAAGTTGATAAATTGTTTCTGATATTATGATAAACAATTTATCAGTTGACTCAAAGTTAGCAGCTCTTCTATTACAGGTTTTACGGTTTTTAGGAAAGTCGGATCTTTGCTGTCTGGACTTACAAAATTGAATTTAGAATTCCTTCTGATTTTCCAGAAATAACACTTTTCAAATTCCTAGAATTTGGTTGAAATTTAAAATTATTTTTTCTCCCAATTTCAGCCTCACTGTTTTTTTATTTTCTCCCCATTAATCACCATTGTTTTGGTTATTTTTTCTCTCCCAATTTCCTTTCATCTGAAAGAAAAGTCACTCTGATTCTTCTTCCGGACGTCTTCTTGGTATTCCTTCTGGTGAAGAACACACAGAATTCGTAATTCGCTCTCCCAACTTTTTGAATTAATTGTCTCACACCAACCTGAATGCGAAAAAAGAGAAAATTCTACTCTTCCTTTTCTGAAACAGACACCAAAAATCCAAAGGATCCTCTCGCTTTTTATTTATTCCGGACACGGTGTGCCAACCGAGAACCTGCAGATATTTTTGAGCTTTGATTCTTTTTAGTCCTTTGAATCTTTTTGGACGTTAATAACAGGATTATATATTTTGATTCCCCTTTATTTCCTTTTATTTCTCCCTCAACCTAATTTCCTGTTTCGTCCGTATACCATTGGTCTCTATTTTTTTTTTACACATTTCTCTGCTATTCAGAATATAAATCCAATTTTCAGCCAAAAAAATGGATCAAGACCTTCTAATTCAACTGGGTGAACGAGCGTGTAAGAACGCTGAAAATCTGACACTTCCACCGGAACTCAATGGCATTTTCTTCTGTGCGCCCAGCTCCAAAGAAGGATTGTAAGTTTAGAAAACTTGAATGGAAAGAAGATTCTCAGAAATATT</canonical>
            <polymorphic>GCTATACAAAGCTATGGAAGTTTTGTGCTCAAGTTTCTTGTTGTCCTAATTTTGAGCCAATTTTTCTCGTTTCATGTCAAAGATATGAAAAAGTAGAAAGTTGATAAATTGTTTCTGATATTATGATAAACAATTTATCAGTTGACTCAAAGTTAGCAGCTCTTCTATTACAGGTTTTACGGTTTTTAGGAAAGTCGGATCTTTGCTGTCTGGACTTACAAAATTGAATTTAGAATTCCTTCTGATTTTCCAGAAATAACACTTTTCAAATTCCTAGAATTTGGTTGAAATTTAAAATTATTTTTTCTCCCAATTTCAGCCTCACTGTTTTTTTATTTTCTCCCCATTAATCACCATTGTTTTGGTTATTTTTTCTCTCCCAATTTCCTTTCATCTGAAAGAAAAGTCACTCTGATTCTTCTTCCGGACGTCTTCTTGGTATTCCTTCTGGTGAAGAACACACAGAATTCGTAATTCGCTCTCCCAACTTTTTGAATTAWTTGTCTCACACCAACCTGAATGCGAAAAAAGAGAAAATTCTACTCTTCCTTTTCTGAAACAGACACCAAAAATCCAAAGGATCCTCTCGCTTTTTATTTATTCCGGACACGGTGTGCCAACCGAGAACCTGCAGATATTTTTGAGCTTTGATTCTTTTTAGTCCTTTGAATCTTTTTGGACGTTAATAACAGGATTATATATTTTGATTCCCCTTTATTTCCTTTTATTTCTCCCTCAACCTAATTTCCTGTTTCGTCCGTATACCATTGGTCTCTATTTTTTTTTTACACATTTCTCTGCTATTCAGAATATAAATCCAATTTTCAGCCAAAAAAATGGATCAAGACCTTCTAATTCAACTGGGTGAACGAGCGTGTAAGAACGCTGAAAATCTGACACTTCCACCGGAACTCAATGGCATTTTCTTCTGTGCGCCCAGCTCCAAAGAAGGATTGTAAGTTTAGAAAACTTGAATGGAAAGAAGATTCTCAGAAATATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 347 150</canonical_bands>
                <polymorphic_bands>653 347</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>317 292 186 150 55</canonical_bands>
                <polymorphic_bands>336 317 292 55</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>207 147 90 84 77 70 48 47 37 35 34 25 22 16 11 11 9 7 7 7 5 4</canonical_bands>
                <polymorphic_bands>207 147 90 84 77 70 48 47 41 35 34 25 22 16 11 11 9 7 7 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTCCTTCTGGTGAAGAACAC</pcr_primer_p1>
		<pcr_primer_p2>TTATTAACGTCCAAAAAGATTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATTCCTTCTGGTGAAGAACACACAGAATTCGTAATTCGCTCTCCCAACTTTTTGAATTAATTGTCTCACACCAACCTGAATGCGAAAAAAGAGAAAATTCTACTCTTCCTTTTCTGAAACAGACACCAAAAATCCAAAGGATCCTCTCGCTTTTTATTTATTCCGGACACGGTGTGCCAACCGAGAACCTGCAGATATTTTTGAGCTTTGATTCTTTTTAGTCCTTTGAATCTTTTTGGACGTTAATAA</canonical_amplicon>
		<polymorphic_amplicon>TATTCCTTCTGGTGAAGAACACACAGAATTCGTAATTCGCTCTCCCAACTTTTTGAATTAWTTGTCTCACACCAACCTGAATGCGAAAAAAGAGAAAATTCTACTCTTCCTTTTCTGAAACAGACACCAAAAATCCAAAGGATCCTCTCGCTTTTTATTTATTCCGGACACGGTGTGCCAACCGAGAACCTGCAGATATTTTTGAGCTTTGATTCTTTTTAGTCCTTTGAATCTTTTTGGACGTTAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10635</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>50178</contig_pos>
        <strand>+</strand>
        <context>GAGGAAATTA[C/T]TGAAAGAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAATAGTTTCCTTTGATCTTTGATGTTAAAGGGAGAGAAGAGGAAATTA</left_flank>
        <right_flank>TGAAAGAAATTGAAAAACTTGGAGTCGAGGCTATTCTAAAGAACATATGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCAGGTGCCCGATAATCGGAACGGAAGGGGGTGGAGACCTAAAAAAGGCTCTATTTATTCTGGCTGCCACGTGACTGACTAATGGTGGGAACTCAATCACAGAAAAATTACAAAAATCTGATTGAATTCCTGGGAAAGGGAATGGAATTATTGACGAAAACATAATGGAAAATGACACATTTCAGAAAAAAGAACGAACGGCTGGTTTTTTTTTAGAGACACAAAGGAAGAAGCTGAAAAGTATATTGTTCTTATGAAATTATTATGACGTCTGGAATCCTAGACTAAAGATTCGAGACTAATATGGAATCGAAAAAAGAAGAGTAAAGTCTAGTTTGAAACATCAAAAATAATAAAAGAAGAAAAATGACATTGAATAATATTTTGCAGGTGTCAATTTTTAAGTTTTTCTCCAGATAATTAAGTGGAAATGACTTTTAAAGGTTGCTTAATAGTTTCCTTTGATCTTTGATGTTAAAGGGAGAGAAGAGGAAATTACTGAAAGAAATTGAAAAACTTGGAGTCGAGGCTATTCTAAAGAACATATGACTAAAATAAAGTTTGGCTTTCATGTGGGCTTTTATAACCAGAACTTGGTACTTGAGACAGAAAAAAATAATATCGTCAAGTGGAACAATATTTCAAAATAGTATAGTTCTTCCGTTGATTTATAAGGTTTTGCATATGGAAAGTATTCAAAACTACCGTATTATTTGGGGTATTCAAATCTGGAGGTTTCACATCTCGATAAAAGAAACTGAAAGTATACGCCGTTTTATCTCTAACCAGCAAGCTGGTGCGCCTTCGGCGCTAATCAATCTAGTTTTTTTTACTGATTCGTGGCTCAGCTCCTCAATTATTTTTAAAGGGTCACGTAAATTTGTATTAATTTTTCAAGCTTTTCAAAAGTTTACAGACACCGGGACGGACAGACGCCTCTAGCGTTTTATTTATAAGGAAGATAGAAGCTAGCCCAAACTTGGAGACTATTGAACTATG</canonical>
            <polymorphic>GTCAGGTGCCCGATAATCGGAACGGAAGGGGGTGGAGACCTAAAAAAGGCTCTATTTATTCTGGCTGCCACGTGACTGACTAATGGTGGGAACTCAATCACAGAAAAATTACAAAAATCTGATTGAATTCCTGGGAAAGGGAATGGAATTATTGACGAAAACATAATGGAAAATGACACATTTCAGAAAAAAGAACGAACGGCTGGTTTTTTTTTAGAGACACAAAGGAAGAAGCTGAAAAGTATATTGTTCTTATGAAATTATTATGACGTCTGGAATCCTAGACTAAAGATTCGAGACTAATATGGAATCGAAAAAAGAAGAGTAAAGTCTAGTTTGAAACATCAAAAATAATAAAAGAAGAAAAATGACATTGAATAATATTTTGCAGGTGTCAATTTTTAAGTTTTTCTCCAGATAATTAAGTGGAAATGACTTTTAAAGGTTGCTTAATAGTTTCCTTTGATCTTTGATGTTAAAGGGAGAGAAGAGGAAATTAYTGAAAGAAATTGAAAAACTTGGAGTCGAGGCTATTCTAAAGAACATATGACTAAAATAAAGTTTGGCTTTCATGTGGGCTTTTATAACCAGAACTTGGTACTTGAGACAGAAAAAAATAATATCGTCAAGTGGAACAATATTTCAAAATAGTATAGTTCTTCCGTTGATTTATAAGGTTTTGCATATGGAAAGTATTCAAAACTACCGTATTATTTGGGGTATTCAAATCTGGAGGTTTCACATCTCGATAAAAGAAACTGAAAGTATACGCCGTTTTATCTCTAACCAGCAAGCTGGTGCGCCTTCGGCGCTAATCAATCTAGTTTTTTTTACTGATTCGTGGCTCAGCTCCTCAATTATTTTTAAAGGGTCACGTAAATTTGTATTAATTTTTCAAGCTTTTCAAAAGTTTACAGACACCGGGACGGACAGACGCCTCTAGCGTTTTATTTATAAGGAAGATAGAAGCTAGCCCAAACTTGGAGACTATTGAACTATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGTGTCAATTTTTAAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTTCCACTTGACGATATTATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGGTGTCAATTTTTAAGTTTTTCTCCAGATAATTAAGTGGAAATGACTTTTAAAGGTTGCTTAATAGTTTCCTTTGATCTTTGATGTTAAAGGGAGAGAAGAGGAAATTACTGAAAGAAATTGAAAAACTTGGAGTCGAGGCTATTCTAAAGAACATATGACTAAAATAAAGTTTGGCTTTCATGTGGGCTTTTATAACCAGAACTTGGTACTTGAGACAGAAAAAAATAATATCGTCAAGTGGAACAA</canonical_amplicon>
		<polymorphic_amplicon>CAGGTGTCAATTTTTAAGTTTTTCTCCAGATAATTAAGTGGAAATGACTTTTAAAGGTTGCTTAATAGTTTCCTTTGATCTTTGATGTTAAAGGGAGAGAAGAGGAAATTAYTGAAAGAAATTGAAAAACTTGGAGTCGAGGCTATTCTAAAGAACATATGACTAAAATAAAGTTTGGCTTTCATGTGGGCTTTTATAACCAGAACTTGGTACTTGAGACAGAAAAAAATAATATCGTCAAGTGGAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10637</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>151473</contig_pos>
        <strand>+</strand>
        <context>GAATGAGGAT[C/T]CACAGTATGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGAATGTGTTCAGCGACTGGAGTACGCACAAAACGATCAGAATGAGGAT</left_flank>
        <right_flank>CACAGTATGCGAGAATCAACAAAACGCGAAGAGTTCGGAAGCAACCTATA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACGAGCGCTATCGCCATTCGACAATAGAGTCAATCTGGTGATTCAAGGTATACATTTGATTATTTCTCTTACTATTAGTATGAATCTCTAAATTTATAGAAGAGAAGTTGTACAAAATCCGAGAGCAATGGCTCATTGAAGCAATTCAACTTGTTCTTCTTTCACTCCCCACATCTCGACGTCGTAAACTTCACAAATTCGTCTGCTTTATCAAATCGATTGAAACGAATCAGCTTTTCGACCTTGCTGATCCATCAAACGGCTCTTCGAATAACCGTGAAGCGGTAATAACGGTACATTTGAATACGATTCAAAAATTTCTGAATTCAGGCAATAATTGGATTATGGACGGGTGTCTGTGGCGGTTGCCGAAAACAACAAGGAATGCTTATCACTGCGGTTCTACTGGCCAACTACCGAACACTTTTCGCAGTTCCTGAAGAATTCGTTGAATGTGTTCAGCGACTGGAGTACGCACAAAACGATCAGAATGAGGATCCACAGTATGCGAGAATCAACAAAACGCGAAGAGTTCGGAAGCAACCTATAATGGAAGCGTCGCTTTCTTCTCCAGCAGCATTCAAAAAATATTCGAAAGATTCAAAAGATATCACAGTAGAAAAGTCAAAGAAAGGATTGTTCACTCGACTTCTCCGGAAATAAACAGGAATCATAGACTTCATGTATGTATTATAAGATATTTATGCTCTTTTTTATTTTGTACCCACTCATCACACCCCATTGTCCCCTCTCGATATCTATTTCTAACAATTTGGGTTGTCTTTTTTCTTGTGGATAGCTGAAACCCCGAGTCGAATTGATCTGTACCATAAAGATTCGTATCAATTTATGTGGTTGCTGTTCTACTTGTTGGTTTTTGTGCCATTTTAATCTCATATTCATTATCTTGTCCCATAACGAAGGGGAGAGCTGGGTAGAATAGACTGCCAAAGCCTGAAGATTGCAGGAAAACACCAGAGAATGGTTCCCTTTTTCTCT</canonical>
            <polymorphic>GACGAGCGCTATCGCCATTCGACAATAGAGTCAATCTGGTGATTCAAGGTATACATTTGATTATTTCTCTTACTATTAGTATGAATCTCTAAATTTATAGAAGAGAAGTTGTACAAAATCCGAGAGCAATGGCTCATTGAAGCAATTCAACTTGTTCTTCTTTCACTCCCCACATCTCGACGTCGTAAACTTCACAAATTCGTCTGCTTTATCAAATCGATTGAAACGAATCAGCTTTTCGACCTTGCTGATCCATCAAACGGCTCTTCGAATAACCGTGAAGCGGTAATAACGGTACATTTGAATACGATTCAAAAATTTCTGAATTCAGGCAATAATTGGATTATGGACGGGTGTCTGTGGCGGTTGCCGAAAACAACAAGGAATGCTTATCACTGCGGTTCTACTGGCCAACTACCGAACACTTTTCGCAGTTCCTGAAGAATTCGTTGAATGTGTTCAGCGACTGGAGTACGCACAAAACGATCAGAATGAGGATYCACAGTATGCGAGAATCAACAAAACGCGAAGAGTTCGGAAGCAACCTATAATGGAAGCGTCGCTTTCTTCTCCAGCAGCATTCAAAAAATATTCGAAAGATTCAAAAGATATCACAGTAGAAAAGTCAAAGAAAGGATTGTTCACTCGACTTCTCCGGAAATAAACAGGAATCATAGACTTCATGTATGTATTATAAGATATTTATGCTCTTTTTTATTTTGTACCCACTCATCACACCCCATTGTCCCCTCTCGATATCTATTTCTAACAATTTGGGTTGTCTTTTTTCTTGTGGATAGCTGAAACCCCGAGTCGAATTGATCTGTACCATAAAGATTCGTATCAATTTATGTGGTTGCTGTTCTACTTGTTGGTTTTTGTGCCATTTTAATCTCATATTCATTATCTTGTCCCATAACGAAGGGGAGAGCTGGGTAGAATAGACTGCCAAAGCCTGAAGATTGCAGGAAAACACCAGAGAATGGTTCCCTTTTTCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGATCC</site>
                <isoschizomers>
                    <enzyme>BamHI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>324 249 235 180 12</canonical_bands>
                <polymorphic_bands>336 249 235 180</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>498 489 13</canonical_bands>
                <polymorphic_bands>987 13</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAAGAATTCGTTGAATGTG</pcr_primer_p1>
		<pcr_primer_p2>CATGAAGTCTATGATTCCTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTGAAGAATTCGTTGAATGTGTTCAGCGACTGGAGTACGCACAAAACGATCAGAATGAGGATCCACAGTATGCGAGAATCAACAAAACGCGAAGAGTTCGGAAGCAACCTATAATGGAAGCGTCGCTTTCTTCTCCAGCAGCATTCAAAAAATATTCGAAAGATTCAAAAGATATCACAGTAGAAAAGTCAAAGAAAGGATTGTTCACTCGACTTCTCCGGAAATAAACAGGAATCATAGACTTCATG</canonical_amplicon>
		<polymorphic_amplicon>CTGAAGAATTCGTTGAATGTGTTCAGCGACTGGAGTACGCACAAAACGATCAGAATGAGGATYCACAGTATGCGAGAATCAACAAAACGCGAAGAGTTCGGAAGCAACCTATAATGGAAGCGTCGCTTTCTTCTCCAGCAGCATTCAAAAAATATTCGAAAGATTCAAAAGATATCACAGTAGAAAAGTCAAAGAAAGGATTGTTCACTCGACTTCTCCGGAAATAAACAGGAATCATAGACTTCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10638</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>161241</contig_pos>
        <strand>+</strand>
        <context>GCGAGATTGT[C/T]TCCGTCAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGGTAACGAATATTGATTCCTTTCGAGTGCAGAATATCAGCGAGATTGT</left_flank>
        <right_flank>TCCGTCAATTGGTTGCACGGTGCAATCCTTGAAGCTTTGTACAATTTCAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGAATCGAGTTGATAATCTCTGGCAACGATTTGAACTCCCATAATCTTGACAACGCGACGGAAGAGAGCAGTTTTTTGAATCTCATGTTGCTCGAGGAACTTGTCAAGAGTTTCCGTATCAATATGATATCCATAGTAATACGCAGATTCCTCGCAAATGCTCTTCCACAATGATGCAGTTGTCAGCGTTGCCCACACTCCAGAATTCTTCTTCTTACCGTTCTTCTTGCTACTCTTCTTATGCGCATGCGAAGCCACAGGGCTTGGCTCAGAAACAGTAGAGAACAGGCAGTTGAGAATGTGCGAAGTACTAACAACCAACTGATCAACTGGAGTTTGAACATTGATCTTGCGAATAACGTGCTTCGCTGAACGGGCAACGATGTCCGAGAGAACGAGTGGACGAGCGAAAGAGTTCGTATCTTGAACGCGTTTCCCGATTTCTCCCAGGTAACGAATATTGATTCCTTTCGAGTGCAGAATATCAGCGAGATTGTTTCCGTCAATTGGTTGCACGGTGCAATCCTTGAAGCTTTGTACAATTTCAGGAATTTGATTAGTGAGAAGGTACTCGGCGGCATCAATAACAACTCGGCGTTGACGTTCCAAGTTTTCGCTTGGAGCATGCTTCACATTAGGCGAGAAACAATCTGGATTGAATTTGATTACGAAGCGATCTTCATAGATGGAATGAATTTCCGCGCACGCCTCCTTGATGGCGTCCTGGACAATCTTATTCTTAGTTTCGATTTCCCTATCTTCGCTAACAGCCACGAAAACCAGTGAAAGCTCACTTTCTGCTTCAGCTGTAAGAAAGAAATATTGGAGACGTTGGAAAACACTTTTGGAATGACTCACCTGCTTGTTTTATCAGTTCTTCATCGTTCTTCTCCTTCGCTTCAGTAATAAGAGCACGAATCTTTCTTGCCGTTGATTGTATGAACATCACAAGTCTAGACTCGCAGAATTGATCCACCAACTCACGACGAAGAGCAGAA</canonical>
            <polymorphic>GAGGAATCGAGTTGATAATCTCTGGCAACGATTTGAACTCCCATAATCTTGACAACGCGACGGAAGAGAGCAGTTTTTTGAATCTCATGTTGCTCGAGGAACTTGTCAAGAGTTTCCGTATCAATATGATATCCATAGTAATACGCAGATTCCTCGCAAATGCTCTTCCACAATGATGCAGTTGTCAGCGTTGCCCACACTCCAGAATTCTTCTTCTTACCGTTCTTCTTGCTACTCTTCTTATGCGCATGCGAAGCCACAGGGCTTGGCTCAGAAACAGTAGAGAACAGGCAGTTGAGAATGTGCGAAGTACTAACAACCAACTGATCAACTGGAGTTTGAACATTGATCTTGCGAATAACGTGCTTCGCTGAACGGGCAACGATGTCCGAGAGAACGAGTGGACGAGCGAAAGAGTTCGTATCTTGAACGCGTTTCCCGATTTCTCCCAGGTAACGAATATTGATTCCTTTCGAGTGCAGAATATCAGCGAGATTGTYTCCGTCAATTGGTTGCACGGTGCAATCCTTGAAGCTTTGTACAATTTCAGGAATTTGATTAGTGAGAAGGTACTCGGCGGCATCAATAACAACTCGGCGTTGACGTTCCAAGTTTTCGCTTGGAGCATGCTTCACATTAGGCGAGAAACAATCTGGATTGAATTTGATTACGAAGCGATCTTCATAGATGGAATGAATTTCCGCGCACGCCTCCTTGATGGCGTCCTGGACAATCTTATTCTTAGTTTCGATTTCCCTATCTTCGCTAACAGCCACGAAAACCAGTGAAAGCTCACTTTCTGCTTCAGCTGTAAGAAAGAAATATTGGAGACGTTGGAAAACACTTTTGGAATGACTCACCTGCTTGTTTTATCAGTTCTTCATCGTTCTTCTCCTTCGCTTCAGTAATAAGAGCACGAATCTTTCTTGCCGTTGATTGTATGAACATCACAAGTCTAGACTCGCAGAATTGATCCACCAACTCACGACGAAGAGCAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTGGAGTTTGAACATTGATCT</pcr_primer_p1>
		<pcr_primer_p2>CGAGTACCTTCTCACTAATCAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACTGGAGTTTGAACATTGATCTTGCGAATAACGTGCTTCGCTGAACGGGCAACGATGTCCGAGAGAACGAGTGGACGAGCGAAAGAGTTCGTATCTTGAACGCGTTTCCCGATTTCTCCCAGGTAACGAATATTGATTCCTTTCGAGTGCAGAATATCAGCGAGATTGTTTCCGTCAATTGGTTGCACGGTGCAATCCTTGAAGCTTTGTACAATTTCAGGAATTTGATTAGTGAGAAGGTACTCG</canonical_amplicon>
		<polymorphic_amplicon>ACTGGAGTTTGAACATTGATCTTGCGAATAACGTGCTTCGCTGAACGGGCAACGATGTCCGAGAGAACGAGTGGACGAGCGAAAGAGTTCGTATCTTGAACGCGTTTCCCGATTTCTCCCAGGTAACGAATATTGATTCCTTTCGAGTGCAGAATATCAGCGAGATTGTYTCCGTCAATTGGTTGCACGGTGCAATCCTTGAAGCTTTGTACAATTTCAGGAATTTGATTAGTGAGAAGGTACTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10639</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>183856</contig_pos>
        <strand>+</strand>
        <context>ACAGAGTCAG[A/C]CAAAATCGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTGGGTTATATGTACACGTTGCTTAAGCTGGAACTTGCGGACAGAGTCAG</left_flank>
        <right_flank>CAAAATCGATATTCTTCAAGGCAAGCCCTAAAGTTCTGAAAAACGACAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTCCCAATCCCCGTTCCGACATGACAGAGAAAATAACAGTGTCATTGAACACCTGTTGAGCTGGTTGGCAGTGTATTCTGATCAGGAAACATTTTGGTGTCTCGGATGAAAATTTCGTTTCGTTCGTTGCTGTTGCGAGATAGATCAGATTCGATTGACCACCACTGTAAGACTCCTTTTTTTAGAATCAAAATTTCGAAAAATGTAACTAACGTGATTTGGGTCACTTCAACTTCATTTCTTTCCAGATGAATCCAACCACCTCGCAGATAATCAGATCCCAATTCTAACGCCTTTTCGAGGATTACATCAGAATCCAGAGAATTTTGGGTGAACAGTGTCTGGAATTTAATTGGTAAATGTTAGAAGTAATATAAATCAAAGGTCTTACTCTTATATCAGATAGCATGACGAGAAGGTGAGTATGATGAGTGAAGAAGGAGGCAGAGTGGGTTATATGTACACGTTGCTTAAGCTGGAACTTGCGGACAGAGTCAGCCAAAATCGATATTCTTCAAGGCAAGCCCTAAAGTTCTGAAAAACGACAAATTAACTCGTAACAAATTTATTGGAAAATTTAACCGGTAAATAGATAATTCATAAAACCATATAAAGCCCAAAATTAAGATATGTAACAAGATCGGTAATAAGATGTATGGGACAAGTTAGAAGTTCTTTAGCTAAAAAGCTCTAGTGCATTGACTCGTAACCGTTGCTTTCAGTGGGAGCTCGACCATCGTAGCCGACTGTTCCACAATCACCGCACACGTAGAAACAGAGATTCGGTCGCTGGAACTCGTCGTCGGGTACTTTGTGGATTCGAACTTCAACACCATCTGGGAGATTGTTATGGATTGCTGTTTGGCGTCTGAGAATAGGGCAAAAGGTTGGGTAGTTGAATAGAATTATGCTTACGTAATATGTAGACATCCGGTTGGTACGGTAGCCACCATCCATTTACTTTTTAGATTTGGACGAGACATCTCTACTTTGATTCCG</canonical>
            <polymorphic>GGTCCCAATCCCCGTTCCGACATGACAGAGAAAATAACAGTGTCATTGAACACCTGTTGAGCTGGTTGGCAGTGTATTCTGATCAGGAAACATTTTGGTGTCTCGGATGAAAATTTCGTTTCGTTCGTTGCTGTTGCGAGATAGATCAGATTCGATTGACCACCACTGTAAGACTCCTTTTTTTAGAATCAAAATTTCGAAAAATGTAACTAACGTGATTTGGGTCACTTCAACTTCATTTCTTTCCAGATGAATCCAACCACCTCGCAGATAATCAGATCCCAATTCTAACGCCTTTTCGAGGATTACATCAGAATCCAGAGAATTTTGGGTGAACAGTGTCTGGAATTTAATTGGTAAATGTTAGAAGTAATATAAATCAAAGGTCTTACTCTTATATCAGATAGCATGACGAGAAGGTGAGTATGATGAGTGAAGAAGGAGGCAGAGTGGGTTATATGTACACGTTGCTTAAGCTGGAACTTGCGGACAGAGTCAGMCAAAATCGATATTCTTCAAGGCAAGCCCTAAAGTTCTGAAAAACGACAAATTAACTCGTAACAAATTTATTGGAAAATTTAACCGGTAAATAGATAATTCATAAAACCATATAAAGCCCAAAATTAAGATATGTAACAAGATCGGTAATAAGATGTATGGGACAAGTTAGAAGTTCTTTAGCTAAAAAGCTCTAGTGCATTGACTCGTAACCGTTGCTTTCAGTGGGAGCTCGACCATCGTAGCCGACTGTTCCACAATCACCGCACACGTAGAAACAGAGATTCGGTCGCTGGAACTCGTCGTCGGGTACTTTGTGGATTCGAACTTCAACACCATCTGGGAGATTGTTATGGATTGCTGTTTGGCGTCTGAGAATAGGGCAAAAGGTTGGGTAGTTGAATAGAATTATGCTTACGTAATATGTAGACATCCGGTTGGTACGGTAGCCACCATCCATTTACTTTTTAGATTTGGACGAGACATCTCTACTTTGATTCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>415 204 91 65 61 53 40 26 23 14 8</canonical_bands>
                <polymorphic_bands>415 204 91 65 61 53 49 40 14 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATCAGATAGCATGACGAGAAG</pcr_primer_p1>
		<pcr_primer_p2>CCGATCTTGTTACATATCTTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATATCAGATAGCATGACGAGAAGGTGAGTATGATGAGTGAAGAAGGAGGCAGAGTGGGTTATATGTACACGTTGCTTAAGCTGGAACTTGCGGACAGAGTCAGCCAAAATCGATATTCTTCAAGGCAAGCCCTAAAGTTCTGAAAAACGACAAATTAACTCGTAACAAATTTATTGGAAAATTTAACCGGTAAATAGATAATTCATAAAACCATATAAAGCCCAAAATTAAGATATGTAACAAGATCGG</canonical_amplicon>
		<polymorphic_amplicon>ATATCAGATAGCATGACGAGAAGGTGAGTATGATGAGTGAAGAAGGAGGCAGAGTGGGTTATATGTACACGTTGCTTAAGCTGGAACTTGCGGACAGAGTCAGMCAAAATCGATATTCTTCAAGGCAAGCCCTAAAGTTCTGAAAAACGACAAATTAACTCGTAACAAATTTATTGGAAAATTTAACCGGTAAATAGATAATTCATAAAACCATATAAAGCCCAAAATTAAGATATGTAACAAGATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10640</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>183897</contig_pos>
        <strand>+</strand>
        <context>AAGTTCTGAA[A/C]AACGACAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAGAGTCAGCCAAAATCGATATTCTTCAAGGCAAGCCCTAAAGTTCTGAA</left_flank>
        <right_flank>AACGACAAATTAACTCGTAACAAATTTATTGGAAAATTTAACCGGTAAAT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCATTGAACACCTGTTGAGCTGGTTGGCAGTGTATTCTGATCAGGAAACATTTTGGTGTCTCGGATGAAAATTTCGTTTCGTTCGTTGCTGTTGCGAGATAGATCAGATTCGATTGACCACCACTGTAAGACTCCTTTTTTTAGAATCAAAATTTCGAAAAATGTAACTAACGTGATTTGGGTCACTTCAACTTCATTTCTTTCCAGATGAATCCAACCACCTCGCAGATAATCAGATCCCAATTCTAACGCCTTTTCGAGGATTACATCAGAATCCAGAGAATTTTGGGTGAACAGTGTCTGGAATTTAATTGGTAAATGTTAGAAGTAATATAAATCAAAGGTCTTACTCTTATATCAGATAGCATGACGAGAAGGTGAGTATGATGAGTGAAGAAGGAGGCAGAGTGGGTTATATGTACACGTTGCTTAAGCTGGAACTTGCGGACAGAGTCAGCCAAAATCGATATTCTTCAAGGCAAGCCCTAAAGTTCTGAAAAACGACAAATTAACTCGTAACAAATTTATTGGAAAATTTAACCGGTAAATAGATAATTCATAAAACCATATAAAGCCCAAAATTAAGATATGTAACAAGATCGGTAATAAGATGTATGGGACAAGTTAGAAGTTCTTTAGCTAAAAAGCTCTAGTGCATTGACTCGTAACCGTTGCTTTCAGTGGGAGCTCGACCATCGTAGCCGACTGTTCCACAATCACCGCACACGTAGAAACAGAGATTCGGTCGCTGGAACTCGTCGTCGGGTACTTTGTGGATTCGAACTTCAACACCATCTGGGAGATTGTTATGGATTGCTGTTTGGCGTCTGAGAATAGGGCAAAAGGTTGGGTAGTTGAATAGAATTATGCTTACGTAATATGTAGACATCCGGTTGGTACGGTAGCCACCATCCATTTACTTTTTAGATTTGGACGAGACATCTCTACTTTGATTCCGTCATAATCGTCTGGATTGATTCGAAGCATACGATTCCACCA</canonical>
            <polymorphic>GTCATTGAACACCTGTTGAGCTGGTTGGCAGTGTATTCTGATCAGGAAACATTTTGGTGTCTCGGATGAAAATTTCGTTTCGTTCGTTGCTGTTGCGAGATAGATCAGATTCGATTGACCACCACTGTAAGACTCCTTTTTTTAGAATCAAAATTTCGAAAAATGTAACTAACGTGATTTGGGTCACTTCAACTTCATTTCTTTCCAGATGAATCCAACCACCTCGCAGATAATCAGATCCCAATTCTAACGCCTTTTCGAGGATTACATCAGAATCCAGAGAATTTTGGGTGAACAGTGTCTGGAATTTAATTGGTAAATGTTAGAAGTAATATAAATCAAAGGTCTTACTCTTATATCAGATAGCATGACGAGAAGGTGAGTATGATGAGTGAAGAAGGAGGCAGAGTGGGTTATATGTACACGTTGCTTAAGCTGGAACTTGCGGACAGAGTCAGCCAAAATCGATATTCTTCAAGGCAAGCCCTAAAGTTCTGAAMAACGACAAATTAACTCGTAACAAATTTATTGGAAAATTTAACCGGTAAATAGATAATTCATAAAACCATATAAAGCCCAAAATTAAGATATGTAACAAGATCGGTAATAAGATGTATGGGACAAGTTAGAAGTTCTTTAGCTAAAAAGCTCTAGTGCATTGACTCGTAACCGTTGCTTTCAGTGGGAGCTCGACCATCGTAGCCGACTGTTCCACAATCACCGCACACGTAGAAACAGAGATTCGGTCGCTGGAACTCGTCGTCGGGTACTTTGTGGATTCGAACTTCAACACCATCTGGGAGATTGTTATGGATTGCTGTTTGGCGTCTGAGAATAGGGCAAAAGGTTGGGTAGTTGAATAGAATTATGCTTACGTAATATGTAGACATCCGGTTGGTACGGTAGCCACCATCCATTTACTTTTTAGATTTGGACGAGACATCTCTACTTTGATTCCGTCATAATCGTCTGGATTGATTCGAAGCATACGATTCCACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATCAGATAGCATGACGAGAAG</pcr_primer_p1>
		<pcr_primer_p2>CCGATCTTGTTACATATCTTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATATCAGATAGCATGACGAGAAGGTGAGTATGATGAGTGAAGAAGGAGGCAGAGTGGGTTATATGTACACGTTGCTTAAGCTGGAACTTGCGGACAGAGTCAGCCAAAATCGATATTCTTCAAGGCAAGCCCTAAAGTTCTGAAAAACGACAAATTAACTCGTAACAAATTTATTGGAAAATTTAACCGGTAAATAGATAATTCATAAAACCATATAAAGCCCAAAATTAAGATATGTAACAAGATCGG</canonical_amplicon>
		<polymorphic_amplicon>ATATCAGATAGCATGACGAGAAGGTGAGTATGATGAGTGAAGAAGGAGGCAGAGTGGGTTATATGTACACGTTGCTTAAGCTGGAACTTGCGGACAGAGTCAGCCAAAATCGATATTCTTCAAGGCAAGCCCTAAAGTTCTGAAMAACGACAAATTAACTCGTAACAAATTTATTGGAAAATTTAACCGGTAAATAGATAATTCATAAAACCATATAAAGCCCAAAATTAAGATATGTAACAAGATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10641</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>184011</contig_pos>
        <strand>+</strand>
        <context>GTAATAAGAT[G/T]TATGGGACAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACCATATAAAGCCCAAAATTAAGATATGTAACAAGATCGGTAATAAGAT</left_flank>
        <right_flank>TATGGGACAAGTTAGAAGTTCTTTAGCTAAAAAGCTCTAGTGCATTGACT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGACCACCACTGTAAGACTCCTTTTTTTAGAATCAAAATTTCGAAAAATGTAACTAACGTGATTTGGGTCACTTCAACTTCATTTCTTTCCAGATGAATCCAACCACCTCGCAGATAATCAGATCCCAATTCTAACGCCTTTTCGAGGATTACATCAGAATCCAGAGAATTTTGGGTGAACAGTGTCTGGAATTTAATTGGTAAATGTTAGAAGTAATATAAATCAAAGGTCTTACTCTTATATCAGATAGCATGACGAGAAGGTGAGTATGATGAGTGAAGAAGGAGGCAGAGTGGGTTATATGTACACGTTGCTTAAGCTGGAACTTGCGGACAGAGTCAGCCAAAATCGATATTCTTCAAGGCAAGCCCTAAAGTTCTGAAAAACGACAAATTAACTCGTAACAAATTTATTGGAAAATTTAACCGGTAAATAGATAATTCATAAAACCATATAAAGCCCAAAATTAAGATATGTAACAAGATCGGTAATAAGATGTATGGGACAAGTTAGAAGTTCTTTAGCTAAAAAGCTCTAGTGCATTGACTCGTAACCGTTGCTTTCAGTGGGAGCTCGACCATCGTAGCCGACTGTTCCACAATCACCGCACACGTAGAAACAGAGATTCGGTCGCTGGAACTCGTCGTCGGGTACTTTGTGGATTCGAACTTCAACACCATCTGGGAGATTGTTATGGATTGCTGTTTGGCGTCTGAGAATAGGGCAAAAGGTTGGGTAGTTGAATAGAATTATGCTTACGTAATATGTAGACATCCGGTTGGTACGGTAGCCACCATCCATTTACTTTTTAGATTTGGACGAGACATCTCTACTTTGATTCCGTCATAATCGTCTGGATTGATTCGAAGCATACGATTCCACCATTCTGAAACGGAAACTGCATCAACCACACAACCGAACTGCTAATAAATACCTTCTAATGGGAATTCACTCATATCAGCGCGATAAACATTCTGAACATGAATCACGGCATATTG</canonical>
            <polymorphic>TTGACCACCACTGTAAGACTCCTTTTTTTAGAATCAAAATTTCGAAAAATGTAACTAACGTGATTTGGGTCACTTCAACTTCATTTCTTTCCAGATGAATCCAACCACCTCGCAGATAATCAGATCCCAATTCTAACGCCTTTTCGAGGATTACATCAGAATCCAGAGAATTTTGGGTGAACAGTGTCTGGAATTTAATTGGTAAATGTTAGAAGTAATATAAATCAAAGGTCTTACTCTTATATCAGATAGCATGACGAGAAGGTGAGTATGATGAGTGAAGAAGGAGGCAGAGTGGGTTATATGTACACGTTGCTTAAGCTGGAACTTGCGGACAGAGTCAGCCAAAATCGATATTCTTCAAGGCAAGCCCTAAAGTTCTGAAAAACGACAAATTAACTCGTAACAAATTTATTGGAAAATTTAACCGGTAAATAGATAATTCATAAAACCATATAAAGCCCAAAATTAAGATATGTAACAAGATCGGTAATAAGATKTATGGGACAAGTTAGAAGTTCTTTAGCTAAAAAGCTCTAGTGCATTGACTCGTAACCGTTGCTTTCAGTGGGAGCTCGACCATCGTAGCCGACTGTTCCACAATCACCGCACACGTAGAAACAGAGATTCGGTCGCTGGAACTCGTCGTCGGGTACTTTGTGGATTCGAACTTCAACACCATCTGGGAGATTGTTATGGATTGCTGTTTGGCGTCTGAGAATAGGGCAAAAGGTTGGGTAGTTGAATAGAATTATGCTTACGTAATATGTAGACATCCGGTTGGTACGGTAGCCACCATCCATTTACTTTTTAGATTTGGACGAGACATCTCTACTTTGATTCCGTCATAATCGTCTGGATTGATTCGAAGCATACGATTCCACCATTCTGAAACGGAAACTGCATCAACCACACAACCGAACTGCTAATAAATACCTTCTAATGGGAATTCACTCATATCAGCGCGATAAACATTCTGAACATGAATCACGGCATATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGACAAATTAACTCGTAACAAAT</pcr_primer_p1>
		<pcr_primer_p2>CGACCGAATCTCTGTTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CGACAAATTAACTCGTAACAAATTTATTGGAAAATTTAACCGGTAAATAGATAATTCATAAAACCATATAAAGCCCAAAATTAAGATATGTAACAAGATCGGTAATAAGATGTATGGGACAAGTTAGAAGTTCTTTAGCTAAAAAGCTCTAGTGCATTGACTCGTAACCGTTGCTTTCAGTGGGAGCTCGACCATCGTAGCCGACTGTTCCACAATCACCGCACACGTAGAAACAGAGATTCGGTCG</canonical_amplicon>
		<polymorphic_amplicon>CGACAAATTAACTCGTAACAAATTTATTGGAAAATTTAACCGGTAAATAGATAATTCATAAAACCATATAAAGCCCAAAATTAAGATATGTAACAAGATCGGTAATAAGATKTATGGGACAAGTTAGAAGTTCTTTAGCTAAAAAGCTCTAGTGCATTGACTCGTAACCGTTGCTTTCAGTGGGAGCTCGACCATCGTAGCCGACTGTTCCACAATCACCGCACACGTAGAAACAGAGATTCGGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10642</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>184027</contig_pos>
        <strand>+</strand>
        <context>GACAAGTTAG[A/G]AGTTCTTTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTAAGATATGTAACAAGATCGGTAATAAGATGTATGGGACAAGTTAG</left_flank>
        <right_flank>AGTTCTTTAGCTAAAAAGCTCTAGTGCATTGACTCGTAACCGTTGCTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTCCTTTTTTTAGAATCAAAATTTCGAAAAATGTAACTAACGTGATTTGGGTCACTTCAACTTCATTTCTTTCCAGATGAATCCAACCACCTCGCAGATAATCAGATCCCAATTCTAACGCCTTTTCGAGGATTACATCAGAATCCAGAGAATTTTGGGTGAACAGTGTCTGGAATTTAATTGGTAAATGTTAGAAGTAATATAAATCAAAGGTCTTACTCTTATATCAGATAGCATGACGAGAAGGTGAGTATGATGAGTGAAGAAGGAGGCAGAGTGGGTTATATGTACACGTTGCTTAAGCTGGAACTTGCGGACAGAGTCAGCCAAAATCGATATTCTTCAAGGCAAGCCCTAAAGTTCTGAAAAACGACAAATTAACTCGTAACAAATTTATTGGAAAATTTAACCGGTAAATAGATAATTCATAAAACCATATAAAGCCCAAAATTAAGATATGTAACAAGATCGGTAATAAGATGTATGGGACAAGTTAGAAGTTCTTTAGCTAAAAAGCTCTAGTGCATTGACTCGTAACCGTTGCTTTCAGTGGGAGCTCGACCATCGTAGCCGACTGTTCCACAATCACCGCACACGTAGAAACAGAGATTCGGTCGCTGGAACTCGTCGTCGGGTACTTTGTGGATTCGAACTTCAACACCATCTGGGAGATTGTTATGGATTGCTGTTTGGCGTCTGAGAATAGGGCAAAAGGTTGGGTAGTTGAATAGAATTATGCTTACGTAATATGTAGACATCCGGTTGGTACGGTAGCCACCATCCATTTACTTTTTAGATTTGGACGAGACATCTCTACTTTGATTCCGTCATAATCGTCTGGATTGATTCGAAGCATACGATTCCACCATTCTGAAACGGAAACTGCATCAACCACACAACCGAACTGCTAATAAATACCTTCTAATGGGAATTCACTCATATCAGCGCGATAAACATTCTGAACATGAATCACGGCATATTGATGCAAAAAGTGAAGA</canonical>
            <polymorphic>GACTCCTTTTTTTAGAATCAAAATTTCGAAAAATGTAACTAACGTGATTTGGGTCACTTCAACTTCATTTCTTTCCAGATGAATCCAACCACCTCGCAGATAATCAGATCCCAATTCTAACGCCTTTTCGAGGATTACATCAGAATCCAGAGAATTTTGGGTGAACAGTGTCTGGAATTTAATTGGTAAATGTTAGAAGTAATATAAATCAAAGGTCTTACTCTTATATCAGATAGCATGACGAGAAGGTGAGTATGATGAGTGAAGAAGGAGGCAGAGTGGGTTATATGTACACGTTGCTTAAGCTGGAACTTGCGGACAGAGTCAGCCAAAATCGATATTCTTCAAGGCAAGCCCTAAAGTTCTGAAAAACGACAAATTAACTCGTAACAAATTTATTGGAAAATTTAACCGGTAAATAGATAATTCATAAAACCATATAAAGCCCAAAATTAAGATATGTAACAAGATCGGTAATAAGATGTATGGGACAAGTTAGRAGTTCTTTAGCTAAAAAGCTCTAGTGCATTGACTCGTAACCGTTGCTTTCAGTGGGAGCTCGACCATCGTAGCCGACTGTTCCACAATCACCGCACACGTAGAAACAGAGATTCGGTCGCTGGAACTCGTCGTCGGGTACTTTGTGGATTCGAACTTCAACACCATCTGGGAGATTGTTATGGATTGCTGTTTGGCGTCTGAGAATAGGGCAAAAGGTTGGGTAGTTGAATAGAATTATGCTTACGTAATATGTAGACATCCGGTTGGTACGGTAGCCACCATCCATTTACTTTTTAGATTTGGACGAGACATCTCTACTTTGATTCCGTCATAATCGTCTGGATTGATTCGAAGCATACGATTCCACCATTCTGAAACGGAAACTGCATCAACCACACAACCGAACTGCTAATAAATACCTTCTAATGGGAATTCACTCATATCAGCGCGATAAACATTCTGAACATGAATCACGGCATATTGATGCAAAAAGTGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCCCAAAATTAAGATATGTAAC</pcr_primer_p1>
		<pcr_primer_p2>AACAGCAATCCATAACAATCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGCCCAAAATTAAGATATGTAACAAGATCGGTAATAAGATGTATGGGACAAGTTAGAAGTTCTTTAGCTAAAAAGCTCTAGTGCATTGACTCGTAACCGTTGCTTTCAGTGGGAGCTCGACCATCGTAGCCGACTGTTCCACAATCACCGCACACGTAGAAACAGAGATTCGGTCGCTGGAACTCGTCGTCGGGTACTTTGTGGATTCGAACTTCAACACCATCTGGGAGATTGTTATGGATTGCTGTT</canonical_amplicon>
		<polymorphic_amplicon>AAGCCCAAAATTAAGATATGTAACAAGATCGGTAATAAGATGTATGGGACAAGTTAGRAGTTCTTTAGCTAAAAAGCTCTAGTGCATTGACTCGTAACCGTTGCTTTCAGTGGGAGCTCGACCATCGTAGCCGACTGTTCCACAATCACCGCACACGTAGAAACAGAGATTCGGTCGCTGGAACTCGTCGTCGGGTACTTTGTGGATTCGAACTTCAACACCATCTGGGAGATTGTTATGGATTGCTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10643</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>207763</contig_pos>
        <strand></strand>
        <context>MTTTTTTTAT[A/C]ATTCTCCATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TACTCTCTCCTCTCTCTCCCCGCTTTTTCTGTCATAACTCTTTTTTTTAT</left_flank>
        <right_flank>ATTCTCCATCCATTCGTTTTTTAAATGTTTTCCCTTCTCTGAAATGGTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAATCCCTGTGTTTCCATTGCTACTGAACACCAGAAAAAAAAATCGAATTTGGTACCACACGAATCACTCATTTTGTACCCCGCGGTCCCCCGAATCGTTGCACCCTGCGAATTCTTTGCCGTAAAAGTAGTTTTTCATCTTTTAGGTTCTCATTACTCTGATGTAACCACTTGCATTGCGCGCCACCACTTTTCTTCAGTCCATGTAACACCGTCCCCTTCTTCTTCTCGCAGCTAAATAGCAACCATACCACTCTCCTCCCATTCTCAAACTTTTTTTCTTTCTCTTTTATCATCTCTTTAGATCTCCGTCCCGTAATTCGTAGTACAACTTTTTTCATAAAAAGACAAAAATAATGCCTGGTGTAAATCTCGTAGTTTGTGAGCTCCAATTTTTGTAGTGATCGAGTCAGAATGCTCGTGATTTTCTATTCTTCCTTCTCCAGATACTCTCTCCTCTCTCTCCCCGCTTTTTCTGTCATAACTCTTTTTTTTATAATTCTCCATCCATTCGTTTTTTAAATGTTTTCCCTTCTCTGAAATGGTTTTCCGAAAAAAAAACCGTCTTCTTTTTCTCTGTCTTTGTAATAGTTTTCAAATTTTACTTTCCAGGTACTGCACATGAAAGTGATACATTTCAAAGGAGCGGCGTTTCGCCACTTGGACGATGGAAAGGTGGAAATGGTTTGAAAACGTTAAAATTTAACCTATCAAGAACCATATTTATTTTTTCAGATGCCTCCTTATTTCTACGACCGGAAGGCCAAGGTAAGTAATGACATAATATCGTTTTCTTATTGGCTACCACTAATATGTTCAAAACTTGTCAAGGTTAACTTTCAGAACGTAGTATTGGTTCTTATGGTTGTCGACATTATCTTCACTTGTTTCTGCATTCTTCCCGCCAACGATCTCGTCGCTTGTGTCCTCTTTGCTACGGTGAGTCACTGGTCTCTGTTGGACGCCATCAAAAAATTGTGATTGGTCTTTATTATTAT</canonical>
            <polymorphic>TTCAATCCCTGTGTTTCCATTGCTACTGAACACCAGAAAAAAAAATCGAATTTGGTACCACACGAATCACTCATTTTGTACCCCGCGGTCCCCCGAATCGTTGCACCCTGCGAATTCTTTGCCGTAAAAGTAGTTTTTCATCTTTTAGGTTCTCATTACTCTGATGTAACCACTTGCATTGCGCGCCACCACTTTTCTTCAGTCCATGTAACACCGTCCCCTTCTTCTTCTCGCAGCTAAATAGCAACCATACCACTCTCCTCCCATTCTCAAACTTTTTTTCTTTCTCTTTTATCATCTCTTTAGATCTCCGTCCCGTAATTCGTAGTACAACTTTTTTCATAAAAAGACAAAAATAATGCCTGGTGTAAATCTCGTAGTTTGTGAGCTCCAATTTTTGTAGTGATCGAGTCAGAATGCTCGTGATTTTCTATTCTTCCTTCTCCAGATACTCTCTCCTCTCTCTCCCCGCTTTTTCTGTCATAACTCTTTTTTTTATMATTCTCCATCCATTCGTTTTTTAAATGTTTTCCCTTCTCTGAAATGGTTTTCCGAAAAAAAAACCGTCTTCTTTTTCTCTGTCTTTGTAATAGTTTTCAAATTTTACTTTCCAGGTACTGCACATGAAAGTGATACATTTCAAAGGAGCGGCGTTTCGCCACTTGGACGATGGAAAGGTGGAAATGGTTTGAAAACGTTAAAATTTAACCTATCAAGAACCATATTTATTTTTTCAGATGCCTCCTTATTTCTACGACCGGAAGGCCAAGGTAAGTAATGACATAATATCGTTTTCTTATTGGCTACCACTAATATGTTCAAAACTTGTCAAGGTTAACTTTCAGAACGTAGTATTGGTTCTTATGGTTGTCGACATTATCTTCACTTGTTTCTGCATTCTTCCCGCCAACGATCTCGTCGCTTGTGTCCTCTTTGCTACGGTGAGTCACTGGTCTCTGTTGGACGCCATCAAAAAATTGTGATTGGTCTTTATTATTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>274 207 107 102 100 73 64 48 25</canonical_bands>
                <polymorphic_bands>274 207 207 102 73 64 48 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGTAGTGATCGAGTCAGAAT</pcr_primer_p1>
		<pcr_primer_p2>CTTTGAAATGTATCACTTTCATGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTGTAGTGATCGAGTCAGAATGCTCGTGATTTTCTATTCTTCCTTCTCCAGATACTCTCTCCTCTCTCTCCCCGCTTTTTCTGTCATAACTCTTTTTTTTATAATTCTCCATCCATTCGTTTTTTAAATGTTTTCCCTTCTCTGAAATGGTTTTCCGAAAAAAAAACCGTCTTCTTTTTCTCTGTCTTTGTAATAGTTTTCAAATTTTACTTTCCAGGTACTGCACATGAAAGTGATACATTTCAAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTTGTAGTGATCGAGTCAGAATGCTCGTGATTTTCTATTCTTCCTTCTCCAGATACTCTCTCCTCTCTCTCCCCGCTTTTTCTGTCATAACTCTTTTTTTTATMATTCTCCATCCATTCGTTTTTTAAATGTTTTCCCTTCTCTGAAATGGTTTTCCGAAAAAAAAACCGTCTTCTTTTTCTCTGTCTTTGTAATAGTTTTCAAATTTTACTTTCCAGGTACTGCACATGAAAGTGATACATTTCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10644</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>234873</contig_pos>
        <strand>+</strand>
        <context>AATAGGAGTT[A/T]CGATCACGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGTTCCAATATCACCTACACGGACTCCAGACATTTGGGAATAGGAGTT</left_flank>
        <right_flank>CGATCACGAATTGGAACGAAGAATGGGTGAAGCCCATAATTCTTATTGTC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTCAATCCACAAGATAATGCATGAAGATCAGCCAGAACATCTGATTTTCCATGCGACAACTCTTGAATACAACTTTCAGTCATCTGACGGACCGTATTAGCTGCTGTCACAAATGCAAAACAACGAGCAAGTCCTGGGAAGAGACGGTATTGTTGAGTCTGGTAGTCGAGAATCTGAACTTCTTGAGTTCCCGGTTTGATCTCTCCTTGTCTGCGAACAGCTGAATATCGGATTGCGATGACCATAGCCATTGCCAGATAGTAAGATTGATGCATAATCATTTCAGATCTCATGTACAACATTGTAGTGTATCCAACTTTTGGATGAGATGGAGCAGTGTAGACTCCTTCTTTGGATACTTTGCTATGTTTCATAAGCATATTGCGACGAGGGATATGGTAGTTGTCAAATGCTAGGAATCCATTATCCACGCAATTCACTCCCATCTTTGTTCCAATATCACCTACACGGACTCCAGACATTTGGGAATAGGAGTTTCGATCACGAATTGGAACGAAGAATGGGTGAAGCCCATAATTCTTATTGTCAATTATCAAGTTGGCAACAAGAATCACATGGGTACAACTGGTTCCTAGACCTCCTGGCCACCTAAAAATAAAATCATTTTCTAGTCATTCCAATCAATTCCGTACCATTTTGTTGCAGTTGTTGTCGGAGTGTGAATGATAAACTCTTCCGTCGATTTGTCATAAGTTGCCGTTGTCTCGATGGCACTCAAATTGGTTCCTATAAGACGATTAGTTCTATTTTCTTGCAGTACACTCTTGTTCAGTTTATTTTTAGAATCGTGGTTGGGTTGCGATAATTTTGTAGTCGTGTGAGAAGATGACGAATTTCTTAGAAATTTAAAAATTGAATGAAATCATTTTTTCAAGAAAAATTGTAACTTACAATTGTTAGGTATTAAAATGAAGCGTTTTGGAACTATAATTAGGAAAAGAAGTGTGACGAAGTTTTTGCTCACTTTCAGCAAAAGT</canonical>
            <polymorphic>CCTTCAATCCACAAGATAATGCATGAAGATCAGCCAGAACATCTGATTTTCCATGCGACAACTCTTGAATACAACTTTCAGTCATCTGACGGACCGTATTAGCTGCTGTCACAAATGCAAAACAACGAGCAAGTCCTGGGAAGAGACGGTATTGTTGAGTCTGGTAGTCGAGAATCTGAACTTCTTGAGTTCCCGGTTTGATCTCTCCTTGTCTGCGAACAGCTGAATATCGGATTGCGATGACCATAGCCATTGCCAGATAGTAAGATTGATGCATAATCATTTCAGATCTCATGTACAACATTGTAGTGTATCCAACTTTTGGATGAGATGGAGCAGTGTAGACTCCTTCTTTGGATACTTTGCTATGTTTCATAAGCATATTGCGACGAGGGATATGGTAGTTGTCAAATGCTAGGAATCCATTATCCACGCAATTCACTCCCATCTTTGTTCCAATATCACCTACACGGACTCCAGACATTTGGGAATAGGAGTTWCGATCACGAATTGGAACGAAGAATGGGTGAAGCCCATAATTCTTATTGTCAATTATCAAGTTGGCAACAAGAATCACATGGGTACAACTGGTTCCTAGACCTCCTGGCCACCTAAAAATAAAATCATTTTCTAGTCATTCCAATCAATTCCGTACCATTTTGTTGCAGTTGTTGTCGGAGTGTGAATGATAAACTCTTCCGTCGATTTGTCATAAGTTGCCGTTGTCTCGATGGCACTCAAATTGGTTCCTATAAGACGATTAGTTCTATTTTCTTGCAGTACACTCTTGTTCAGTTTATTTTTAGAATCGTGGTTGGGTTGCGATAATTTTGTAGTCGTGTGAGAAGATGACGAATTTCTTAGAAATTTAAAAATTGAATGAAATCATTTTTTCAAGAAAAATTGTAACTTACAATTGTTAGGTATTAAAATGAAGCGTTTTGGAACTATAATTAGGAAAAGAAGTGTGACGAAGTTTTTGCTCACTTTCAGCAAAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>332 271 202 169 26</canonical_bands>
                <polymorphic_bands>534 271 169 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGTTGTCAAATGCTAGGAATC</pcr_primer_p1>
		<pcr_primer_p2>GAATTGATTGGAATGACTAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAGTTGTCAAATGCTAGGAATCCATTATCCACGCAATTCACTCCCATCTTTGTTCCAATATCACCTACACGGACTCCAGACATTTGGGAATAGGAGTTTCGATCACGAATTGGAACGAAGAATGGGTGAAGCCCATAATTCTTATTGTCAATTATCAAGTTGGCAACAAGAATCACATGGGTACAACTGGTTCCTAGACCTCCTGGCCACCTAAAAATAAAATCATTTTCTAGTCATTCCAATCAATTC</canonical_amplicon>
		<polymorphic_amplicon>GTAGTTGTCAAATGCTAGGAATCCATTATCCACGCAATTCACTCCCATCTTTGTTCCAATATCACCTACACGGACTCCAGACATTTGGGAATAGGAGTTWCGATCACGAATTGGAACGAAGAATGGGTGAAGCCCATAATTCTTATTGTCAATTATCAAGTTGGCAACAAGAATCACATGGGTACAACTGGTTCCTAGACCTCCTGGCCACCTAAAAATAAAATCATTTTCTAGTCATTCCAATCAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10645</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>238610</contig_pos>
        <strand>+</strand>
        <context>TGTTTGTGTG[A/G]TTGTGCGCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTGTTTCCCGGAAAACTTAGTCATCTTGACAAGTTGATCTGTTTGTGTG</left_flank>
        <right_flank>TTGTGCGCTTGTGTTATCAATCTTAAATCAAAAGTCCTAAATGTAACGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTACCCACAAATCAGATTATTTTTAAGATGAAAGTAAGTTCAGTTTCTATTGAAAGAACTATGTAGCTCTTCGTTTTTCATGTTCAGGTCACATCAGAAATTTTCTTAATACTTTATTTTTCAAATTAATGTAGCATATTGGGTGCAGCAATAAGAGCAATACAAATGGCGATATAAAATCCAGAAAGTACAAGACACACCCAAAAAGATACAGTATAGAAACGAGATGGTTTTGAACCACGGAACAGGATGAAAGTGAACAGGATTCCAGCGACAAGTCCTCCGATGTGTCCATACATCGATACCTGAAAAACATCAAAAGATTCCAAAATAGAACTGTGTCAAACTGAAAACGTGTTATTTTTGCAATGTACGTGCCGTAGTGTAGTTTCAAGAAAGTAATCATAATCACCCGGATTTTCAGCCGGACAACACATCGCCGAAAAAGAGTGTTTCCCGGAAAACTTAGTCATCTTGACAAGTTGATCTGTTTGTGTGATTGTGCGCTTGTGTTATCAATCTTAAATCAAAAGTCCTAAATGTAACGGAAGAAGTGATAGATGATAAGAATTGCTGCAAAACGACAACGGAACAGTTGTTTAGTCTTTTGGAGAATTACATGGAAACGTAAATTCTTCAGTAAAAGAAAACGCATGTAGGTTTGTTTGATTTGCCCATTCATCATTGTGGGGGAAAGGGTGTAATCTCCTGTTGGAAAAAGGTCAGAGTGAACTATATTTTCTCAAATTTAGAAATTGTCGGAAGCTATTCTGAGGATTTATGGTTCTAGACGGTAGTTTTGGTTCATTTTGGGCAAAAATTCTAAAAAAAATTCAGAAGTTTCTCTGTTGCAGTTTTTATTTTAATTGCTATTTCCAAATTTCTGAGTTTTTAATGTTTCTGAAATATCTGACACGTTCTTTGTGGAAAATCTGGATTCAGTGAAGTTTATGACTTTTCGGAATGTTTTGGATTTTTAGATTTTTGAAATTTCTGTTA</canonical>
            <polymorphic>GTTACCCACAAATCAGATTATTTTTAAGATGAAAGTAAGTTCAGTTTCTATTGAAAGAACTATGTAGCTCTTCGTTTTTCATGTTCAGGTCACATCAGAAATTTTCTTAATACTTTATTTTTCAAATTAATGTAGCATATTGGGTGCAGCAATAAGAGCAATACAAATGGCGATATAAAATCCAGAAAGTACAAGACACACCCAAAAAGATACAGTATAGAAACGAGATGGTTTTGAACCACGGAACAGGATGAAAGTGAACAGGATTCCAGCGACAAGTCCTCCGATGTGTCCATACATCGATACCTGAAAAACATCAAAAGATTCCAAAATAGAACTGTGTCAAACTGAAAACGTGTTATTTTTGCAATGTACGTGCCGTAGTGTAGTTTCAAGAAAGTAATCATAATCACCCGGATTTTCAGCCGGACAACACATCGCCGAAAAAGAGTGTTTCCCGGAAAACTTAGTCATCTTGACAAGTTGATCTGTTTGTGTGRTTGTGCGCTTGTGTTATCAATCTTAAATCAAAAGTCCTAAATGTAACGGAAGAAGTGATAGATGATAAGAATTGCTGCAAAACGACAACGGAACAGTTGTTTAGTCTTTTGGAGAATTACATGGAAACGTAAATTCTTCAGTAAAAGAAAACGCATGTAGGTTTGTTTGATTTGCCCATTCATCATTGTGGGGGAAAGGGTGTAATCTCCTGTTGGAAAAAGGTCAGAGTGAACTATATTTTCTCAAATTTAGAAATTGTCGGAAGCTATTCTGAGGATTTATGGTTCTAGACGGTAGTTTTGGTTCATTTTGGGCAAAAATTCTAAAAAAAATTCAGAAGTTTCTCTGTTGCAGTTTTTATTTTAATTGCTATTTCCAAATTTCTGAGTTTTTAATGTTTCTGAAATATCTGACACGTTCTTTGTGGAAAATCTGGATTCAGTGAAGTTTATGACTTTTCGGAATGTTTTGGATTTTTAGATTTTTGAAATTTCTGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCAAAAGATTCCAAAATAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCATCTATCACTTCTTCCGTTAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CATCAAAAGATTCCAAAATAGAACTGTGTCAAACTGAAAACGTGTTATTTTTGCAATGTACGTGCCGTAGTGTAGTTTCAAGAAAGTAATCATAATCACCCGGATTTTCAGCCGGACAACACATCGCCGAAAAAGAGTGTTTCCCGGAAAACTTAGTCATCTTGACAAGTTGATCTGTTTGTGTGATTGTGCGCTTGTGTTATCAATCTTAAATCAAAAGTCCTAAATGTAACGGAAGAAGTGATAGATGA</canonical_amplicon>
		<polymorphic_amplicon>CATCAAAAGATTCCAAAATAGAACTGTGTCAAACTGAAAACGTGTTATTTTTGCAATGTACGTGCCGTAGTGTAGTTTCAAGAAAGTAATCATAATCACCCGGATTTTCAGCCGGACAACACATCGCCGAAAAAGAGTGTTTCCCGGAAAACTTAGTCATCTTGACAAGTTGATCTGTTTGTGTGRTTGTGCGCTTGTGTTATCAATCTTAAATCAAAAGTCCTAAATGTAACGGAAGAAGTGATAGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10646</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>296120</contig_pos>
        <strand>+</strand>
        <context>GTTCCTTCTG[C/G]CTTTGTCGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTCATCCATAGCGACAGGAACTTCTTCTCCTCTAAGGAATGTTCCTTCTG</left_flank>
        <right_flank>CTTTGTCGGAATTGGAGTGGGAGGTGTGGTTGTCGTTGATGGAGTTGTGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTGGTTTATGATAGTTTTAGAATTTTCCTGGAAATGTGTGAAAATGTGCTATGAATATGCGTACATTCTGACACATTTTTAGCAAGAATTTAAATTCTGCATACGCCACCATCAAATTTTGAATTCGATTTTTTGTAGTAATAAGGAATAAATTATATAATAAATAGCATTTGCATCAAAATTTTATTCCAAATTAGCTTAAAACTTAAGCATCAGGATCAACAACTTTCCTTGGAGGTTTTGGAGTTCCAACTGTTTGGAAGTCAAAGTCGCCATCAGAAGGAATATTCGAAGGTGCAAGAGCGGTATCCGGAGCGTGAGCAGCATCGATTTTAACGGTAGCATACAGAGCAGGTCCGGCTCCACCAACTGGGAAGGGAGTGTTTGGAGGTGTTGGGCTTCTAATCCAGAATGTCGTGCTAGACTCAATTTTATCACCGCCATCAGACTCATCCATAGCGACAGGAACTTCTTCTCCTCTAAGGAATGTTCCTTCTGGCTTTGTCGGAATTGGAGTGGGAGGTGTGGTTGTCGTTGATGGAGTTGTGGTAGTAGACAAGCTGGGCGGAATTTTGGTAGTAGTAGTTGTTGAGGTGGAAGTCGATGTGGATGTTGAAGTGGATGTTGTCGTCGGTGGAGAAGATTGTGTTGCAGGATGAGTTGGAGTTGTAGAAGGAGTTGTTGTTGCAATTGTCGACGAAATTGCCGTTGACGAAGGAGTGGTTGCCGCATGCGTCGTGGATGCAGCAGTTGGTTTTGGCTTACATTTACAAGGACATCTGCACTTGAACTTGAACCCTTCTGGTTCTTGTGGGAAATCTTCTGGCCAGTCTCCTTCACATCCTTCCGAATGGCCACCACCACCACCACCTGAAGCTAGGAAAAATGAAAACTTGACGTTTCCCTGAGTTCCCTGAATAGTCTTATCAAAAGCAAAGCAGAATTCACAAACCTCCAAACCATCCCATGGCAGAAGCCGTTGCAACCGTTGCAATTAGA</canonical>
            <polymorphic>GGTGGTTTATGATAGTTTTAGAATTTTCCTGGAAATGTGTGAAAATGTGCTATGAATATGCGTACATTCTGACACATTTTTAGCAAGAATTTAAATTCTGCATACGCCACCATCAAATTTTGAATTCGATTTTTTGTAGTAATAAGGAATAAATTATATAATAAATAGCATTTGCATCAAAATTTTATTCCAAATTAGCTTAAAACTTAAGCATCAGGATCAACAACTTTCCTTGGAGGTTTTGGAGTTCCAACTGTTTGGAAGTCAAAGTCGCCATCAGAAGGAATATTCGAAGGTGCAAGAGCGGTATCCGGAGCGTGAGCAGCATCGATTTTAACGGTAGCATACAGAGCAGGTCCGGCTCCACCAACTGGGAAGGGAGTGTTTGGAGGTGTTGGGCTTCTAATCCAGAATGTCGTGCTAGACTCAATTTTATCACCGCCATCAGACTCATCCATAGCGACAGGAACTTCTTCTCCTCTAAGGAATGTTCCTTCTGSCTTTGTCGGAATTGGAGTGGGAGGTGTGGTTGTCGTTGATGGAGTTGTGGTAGTAGACAAGCTGGGCGGAATTTTGGTAGTAGTAGTTGTTGAGGTGGAAGTCGATGTGGATGTTGAAGTGGATGTTGTCGTCGGTGGAGAAGATTGTGTTGCAGGATGAGTTGGAGTTGTAGAAGGAGTTGTTGTTGCAATTGTCGACGAAATTGCCGTTGACGAAGGAGTGGTTGCCGCATGCGTCGTGGATGCAGCAGTTGGTTTTGGCTTACATTTACAAGGACATCTGCACTTGAACTTGAACCCTTCTGGTTCTTGTGGGAAATCTTCTGGCCAGTCTCCTTCACATCCTTCCGAATGGCCACCACCACCACCACCTGAAGCTAGGAAAAATGAAAACTTGACGTTTCCCTGAGTTCCCTGAATAGTCTTATCAAAAGCAAAGCAGAATTCACAAACCTCCAAACCATCCCATGGCAGAAGCCGTTGCAACCGTTGCAATTAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>200 198 163 101 100 66 61 38 28 23 22</canonical_bands>
                <polymorphic_bands>200 198 163 162 100 66 38 28 23 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCATCAGACTCATCCATAG</pcr_primer_p1>
		<pcr_primer_p2>CAACAACAACTCCTTCTACAACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCCATCAGACTCATCCATAGCGACAGGAACTTCTTCTCCTCTAAGGAATGTTCCTTCTGGCTTTGTCGGAATTGGAGTGGGAGGTGTGGTTGTCGTTGATGGAGTTGTGGTAGTAGACAAGCTGGGCGGAATTTTGGTAGTAGTAGTTGTTGAGGTGGAAGTCGATGTGGATGTTGAAGTGGATGTTGTCGTCGGTGGAGAAGATTGTGTTGCAGGATGAGTTGGAGTTGTAGAAGGAGTTGTTGTTG</canonical_amplicon>
		<polymorphic_amplicon>GCCATCAGACTCATCCATAGCGACAGGAACTTCTTCTCCTCTAAGGAATGTTCCTTCTGSCTTTGTCGGAATTGGAGTGGGAGGTGTGGTTGTCGTTGATGGAGTTGTGGTAGTAGACAAGCTGGGCGGAATTTTGGTAGTAGTAGTTGTTGAGGTGGAAGTCGATGTGGATGTTGAAGTGGATGTTGTCGTCGGTGGAGAAGATTGTGTTGCAGGATGAGTTGGAGTTGTAGAAGGAGTTGTTGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10647</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>303094</contig_pos>
        <strand>+</strand>
        <context>CTTGACAGAA[A/C]AAAACTCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTCTAACGAATACGTGCGCAGGTGACAAACGACATAAACTTGACAGAA</left_flank>
        <right_flank>AAAACTCAAACTAGCCTGGAATTATGATCATGACAAAATTATAAGATGTG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACAGAATTCAGAATTTGAACGTTCCGATCCCTTTTTGTACACCGGGTCTACAAAATATCTCTAATTAGAAAATCTCATTTACAGGTGATTTTTTTTTGGGTAAAGACTGAAAAACCAAAATGACATTAGCCGGTTGTTTGTGGTATCTAGACATGTCTGAAGTCAAAAAATTAATCTCTCAAAATGAAACCAAGGATTAAGAAGGTGTGAGGGGATTATTACTATCTGTTTGTTGTTTTTGTGCAAAGAAAAACGAATACCTTTGATGTCACGAACTCCGATCATTTATTGAGCCGAACAATCAAATGATATGCAATGATCTGTGAAAGTAATCAGTAATACTACAAAAAATTGAAATATTGTTGATTGTTTTTGTCATTTACCATGTGAAGCAGAACCTAAATACAGTGATCTTCGCTTTTTGCTTTCAAAGCAATTTTCTTTGAAAATTTCTAACGAATACGTGCGCAGGTGACAAACGACATAAACTTGACAGAAAAAAACTCAAACTAGCCTGGAATTATGATCATGACAAAATTATAAGATGTGGAGGTTATACCCACCGAGTTGGAGCTCCGAACCCGTGTTGTTTATCATTTCTGGAACATTTCAGGTTAATGAATCTACTGTAAAGCGTGTATTAGAGTGGCCCCAGCGCTCTCAAATTTGAGCCAATTTATGTCGATTCCTGTGAAAGGTATCAAAAATGTCTCAACTGATAGAATGTTTATCATAATATCAGAAATTTTTTGTCAGTTGACAACATTTTTATATTTTTGACCAGAACCGAGGTTAATCGGTCAAAGTTGAAAGTTAAGGGGGTGTTTTTATTACAGGCCTTACAGTAAACTAGAATATTATGTAATTTTTTCCCTCGATTTTTTGACTGTAGAACAAGCCACATACAAAAAATGCAATAAGAAATCGAAAGATGAAGTGCTGTGTGCTTGAAACTACGTCCATTTTAAATTTCGTCTTGTATTCTTGTATGTAGTTTGG</canonical>
            <polymorphic>GACAGAATTCAGAATTTGAACGTTCCGATCCCTTTTTGTACACCGGGTCTACAAAATATCTCTAATTAGAAAATCTCATTTACAGGTGATTTTTTTTTGGGTAAAGACTGAAAAACCAAAATGACATTAGCCGGTTGTTTGTGGTATCTAGACATGTCTGAAGTCAAAAAATTAATCTCTCAAAATGAAACCAAGGATTAAGAAGGTGTGAGGGGATTATTACTATCTGTTTGTTGTTTTTGTGCAAAGAAAAACGAATACCTTTGATGTCACGAACTCCGATCATTTATTGAGCCGAACAATCAAATGATATGCAATGATCTGTGAAAGTAATCAGTAATACTACAAAAAATTGAAATATTGTTGATTGTTTTTGTCATTTACCATGTGAAGCAGAACCTAAATACAGTGATCTTCGCTTTTTGCTTTCAAAGCAATTTTCTTTGAAAATTTCTAACGAATACGTGCGCAGGTGACAAACGACATAAACTTGACAGAAMAAAACTCAAACTAGCCTGGAATTATGATCATGACAAAATTATAAGATGTGGAGGTTATACCCACCGAGTTGGAGCTCCGAACCCGTGTTGTTTATCATTTCTGGAACATTTCAGGTTAATGAATCTACTGTAAAGCGTGTATTAGAGTGGCCCCAGCGCTCTCAAATTTGAGCCAATTTATGTCGATTCCTGTGAAAGGTATCAAAAATGTCTCAACTGATAGAATGTTTATCATAATATCAGAAATTTTTTGTCAGTTGACAACATTTTTATATTTTTGACCAGAACCGAGGTTAATCGGTCAAAGTTGAAAGTTAAGGGGGTGTTTTTATTACAGGCCTTACAGTAAACTAGAATATTATGTAATTTTTTCCCTCGATTTTTTGACTGTAGAACAAGCCACATACAAAAAATGCAATAAGAAATCGAAAGATGAAGTGCTGTGTGCTTGAAACTACGTCCATTTTAAATTTCGTCTTGTATTCTTGTATGTAGTTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGCAATGATCTGTGAAAGTAA</pcr_primer_p1>
		<pcr_primer_p2>CCTCCACATCTTATAATTTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TATGCAATGATCTGTGAAAGTAATCAGTAATACTACAAAAAATTGAAATATTGTTGATTGTTTTTGTCATTTACCATGTGAAGCAGAACCTAAATACAGTGATCTTCGCTTTTTGCTTTCAAAGCAATTTTCTTTGAAAATTTCTAACGAATACGTGCGCAGGTGACAAACGACATAAACTTGACAGAAAAAAACTCAAACTAGCCTGGAATTATGATCATGACAAAATTATAAGATGTGGAGG</canonical_amplicon>
		<polymorphic_amplicon>TATGCAATGATCTGTGAAAGTAATCAGTAATACTACAAAAAATTGAAATATTGTTGATTGTTTTTGTCATTTACCATGTGAAGCAGAACCTAAATACAGTGATCTTCGCTTTTTGCTTTCAAAGCAATTTTCTTTGAAAATTTCTAACGAATACGTGCGCAGGTGACAAACGACATAAACTTGACAGAAMAAAACTCAAACTAGCCTGGAATTATGATCATGACAAAATTATAAGATGTGGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10648</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>303500</contig_pos>
        <strand>+</strand>
        <context>CAAGCCACAT[A/G]CAAAAAATGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATTATGTAATTTTTTCCCTCGATTTTTTGACTGTAGAACAAGCCACAT</left_flank>
        <right_flank>CAAAAAATGCAATAAGAAATCGAAAGATGAAGTGCTGTGTGCTTGAAACT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTGATCTTCGCTTTTTGCTTTCAAAGCAATTTTCTTTGAAAATTTCTAACGAATACGTGCGCAGGTGACAAACGACATAAACTTGACAGAAAAAAACTCAAACTAGCCTGGAATTATGATCATGACAAAATTATAAGATGTGGAGGTTATACCCACCGAGTTGGAGCTCCGAACCCGTGTTGTTTATCATTTCTGGAACATTTCAGGTTAATGAATCTACTGTAAAGCGTGTATTAGAGTGGCCCCAGCGCTCTCAAATTTGAGCCAATTTATGTCGATTCCTGTGAAAGGTATCAAAAATGTCTCAACTGATAGAATGTTTATCATAATATCAGAAATTTTTTGTCAGTTGACAACATTTTTATATTTTTGACCAGAACCGAGGTTAATCGGTCAAAGTTGAAAGTTAAGGGGGTGTTTTTATTACAGGCCTTACAGTAAACTAGAATATTATGTAATTTTTTCCCTCGATTTTTTGACTGTAGAACAAGCCACATACAAAAAATGCAATAAGAAATCGAAAGATGAAGTGCTGTGTGCTTGAAACTACGTCCATTTTAAATTTCGTCTTGTATTCTTGTATGTAGTTTGGTGTAAGCATTTTCTGTAATAGACTTTTCTGAGTAAAAACTGAAACACCGTAAAACTAATGAAAATCTAGGAGATTACACTTGGGTTCAAGCGAGAGGGGTCAGAAAGCGCGCCCCAGCAAACTCGTAGGCCAGAAGAAATTTAATAATTTTAAAGTGGACGCGGGTTTGATCTAGATCATGATCTATTTCTTTAAAATCAACTGATTGCGAGGCGCACTTTTTCGCTCTTCATTTAAAATTTTGAAACTCAGCCAACGAAATTCGGCAGCGAATTTAGAATTTTTCCTAAATTTACTTGAGCGCGCTTTCTGACCCCCTCGCTTGAACCCAAGTGAGATTACCGTAAACACTCTAATAGAGTGCCACCCAAATGGTCAACTTTGAGACTTTGAGCGCATTTATTTG</canonical>
            <polymorphic>CAGTGATCTTCGCTTTTTGCTTTCAAAGCAATTTTCTTTGAAAATTTCTAACGAATACGTGCGCAGGTGACAAACGACATAAACTTGACAGAAAAAAACTCAAACTAGCCTGGAATTATGATCATGACAAAATTATAAGATGTGGAGGTTATACCCACCGAGTTGGAGCTCCGAACCCGTGTTGTTTATCATTTCTGGAACATTTCAGGTTAATGAATCTACTGTAAAGCGTGTATTAGAGTGGCCCCAGCGCTCTCAAATTTGAGCCAATTTATGTCGATTCCTGTGAAAGGTATCAAAAATGTCTCAACTGATAGAATGTTTATCATAATATCAGAAATTTTTTGTCAGTTGACAACATTTTTATATTTTTGACCAGAACCGAGGTTAATCGGTCAAAGTTGAAAGTTAAGGGGGTGTTTTTATTACAGGCCTTACAGTAAACTAGAATATTATGTAATTTTTTCCCTCGATTTTTTGACTGTAGAACAAGCCACATRCAAAAAATGCAATAAGAAATCGAAAGATGAAGTGCTGTGTGCTTGAAACTACGTCCATTTTAAATTTCGTCTTGTATTCTTGTATGTAGTTTGGTGTAAGCATTTTCTGTAATAGACTTTTCTGAGTAAAAACTGAAACACCGTAAAACTAATGAAAATCTAGGAGATTACACTTGGGTTCAAGCGAGAGGGGTCAGAAAGCGCGCCCCAGCAAACTCGTAGGCCAGAAGAAATTTAATAATTTTAAAGTGGACGCGGGTTTGATCTAGATCATGATCTATTTCTTTAAAATCAACTGATTGCGAGGCGCACTTTTTCGCTCTTCATTTAAAATTTTGAAACTCAGCCAACGAAATTCGGCAGCGAATTTAGAATTTTTCCTAAATTTACTTGAGCGCGCTTTCTGACCCCCTCGCTTGAACCCAAGTGAGATTACCGTAAACACTCTAATAGAGTGCCACCCAAATGGTCAACTTTGAGACTTTGAGCGCATTTATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAACATTTCAGGTTAATGAAT</pcr_primer_p1>
		<pcr_primer_p2>GTAGTTTCAAGCACACAGCAC</pcr_primer_p2>
		<pcr_amplicon_size>356</pcr_amplicon_size>
		<canonical_amplicon>GGAACATTTCAGGTTAATGAATCTACTGTAAAGCGTGTATTAGAGTGGCCCCAGCGCTCTCAAATTTGAGCCAATTTATGTCGATTCCTGTGAAAGGTATCAAAAATGTCTCAACTGATAGAATGTTTATCATAATATCAGAAATTTTTTGTCAGTTGACAACATTTTTATATTTTTGACCAGAACCGAGGTTAATCGGTCAAAGTTGAAAGTTAAGGGGGTGTTTTTATTACAGGCCTTACAGTAAACTAGAATATTATGTAATTTTTTCCCTCGATTTTTTGACTGTAGAACAAGCCACATACAAAAAATGCAATAAGAAATCGAAAGATGAAGTGCTGTGTGCTTGAAACTAC</canonical_amplicon>
		<polymorphic_amplicon>GGAACATTTCAGGTTAATGAATCTACTGTAAAGCGTGTATTAGAGTGGCCCCAGCGCTCTCAAATTTGAGCCAATTTATGTCGATTCCTGTGAAAGGTATCAAAAATGTCTCAACTGATAGAATGTTTATCATAATATCAGAAATTTTTTGTCAGTTGACAACATTTTTATATTTTTGACCAGAACCGAGGTTAATCGGTCAAAGTTGAAAGTTAAGGGGGTGTTTTTATTACAGGCCTTACAGTAAACTAGAATATTATGTAATTTTTTCCCTCGATTTTTTGACTGTAGAACAAGCCACATRCAAAAAATGCAATAAGAAATCGAAAGATGAAGTGCTGTGTGCTTGAAACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10650</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>149123</contig_pos>
        <strand>+</strand>
        <context>TTGACATGAA[C/T]CTGCAATATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTTTCTCCAGTTCTGACACTTTATCTGGATGGTATCGTTTGACATGAA</left_flank>
        <right_flank>CTGCAATATCCGATTCTATTAACATACTTTGATCCCATCAGGTCCGTTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGACAACCCGTACTGACGTCTCCAATCAACTCATTATGAGCATATTTTCTAATTATCATCCTTCTCATGACATTTATTCTTTCAACTCTTAATTATTCCCAATTCAACTTTAAAAAAAACGAAAACATAATAAAGTTCATAACCAGCCATACTGCTGATAGTGAGTTGGATCCTTGTAATTATACAATTGAGAAGTGTCTTGAATCGATTGGTTTGAGCTTGATCCAGACCTATATGCCTCTGGAGGGAGTTCGTACTCTTGATGATGATGAGATGATGGAATCATGACAGCATGGGGGATTTCCCTGGATCCAGGCTGGAAAAGAAGAAACATTCTAGAATTCTAAACTCTCGAACTGTTACCTGTTGCTGATTCGCAAGCTTCTTCGCTTGTTTTTCAGATGAATTGAACATCTTTTGAGTCTTCGCATCAATTTCTCGTCTATCTTCTTTTCTCCAGTTCTGACACTTTATCTGGATGGTATCGTTTGACATGAACCTGCAATATCCGATTCTATTAACATACTTTGATCCCATCAGGTCCGTTTACCATCAAGTTTTTCTGACTCTTGAAGAGTGTATATTTCCGACAATACGTGCAAAAAATCTTCCCAAAGCCTTCCCGAGAGTGTCCTAGCTGGTGACTGACTATCCCAGCTTTACTTTTTGTTTTGAACAGGCACCCCTGAAAAAAAAACAATGTTGGTAAAGCTAAGCTTAATAGCTCACATTGCACTTGAAGTACTCGTCGCCAATTTCACAGTTATATGCTGTGTGAGCCTGGAACTCAGCTTCGGTTTTGAATTTGGTCAAACATTTGGCGCATTTCAAGAATTGAGAAAAACCTTGCGCTTTGGTCATAGTTGAAAAAATGAATGAATAAACTGTACGGAGGGTCTGCAGCCACAGTTTTATTATTTCGGAATCGGTATTCCATAAAAAGTGCGAATGGAGGAAAAAGGAGCGAGAAACGGTTTTTTGATTGCCGTTCCATGGGAA</canonical>
            <polymorphic>CTGACAACCCGTACTGACGTCTCCAATCAACTCATTATGAGCATATTTTCTAATTATCATCCTTCTCATGACATTTATTCTTTCAACTCTTAATTATTCCCAATTCAACTTTAAAAAAAACGAAAACATAATAAAGTTCATAACCAGCCATACTGCTGATAGTGAGTTGGATCCTTGTAATTATACAATTGAGAAGTGTCTTGAATCGATTGGTTTGAGCTTGATCCAGACCTATATGCCTCTGGAGGGAGTTCGTACTCTTGATGATGATGAGATGATGGAATCATGACAGCATGGGGGATTTCCCTGGATCCAGGCTGGAAAAGAAGAAACATTCTAGAATTCTAAACTCTCGAACTGTTACCTGTTGCTGATTCGCAAGCTTCTTCGCTTGTTTTTCAGATGAATTGAACATCTTTTGAGTCTTCGCATCAATTTCTCGTCTATCTTCTTTTCTCCAGTTCTGACACTTTATCTGGATGGTATCGTTTGACATGAAYCTGCAATATCCGATTCTATTAACATACTTTGATCCCATCAGGTCCGTTTACCATCAAGTTTTTCTGACTCTTGAAGAGTGTATATTTCCGACAATACGTGCAAAAAATCTTCCCAAAGCCTTCCCGAGAGTGTCCTAGCTGGTGACTGACTATCCCAGCTTTACTTTTTGTTTTGAACAGGCACCCCTGAAAAAAAAACAATGTTGGTAAAGCTAAGCTTAATAGCTCACATTGCACTTGAAGTACTCGTCGCCAATTTCACAGTTATATGCTGTGTGAGCCTGGAACTCAGCTTCGGTTTTGAATTTGGTCAAACATTTGGCGCATTTCAAGAATTGAGAAAAACCTTGCGCTTTGGTCATAGTTGAAAAAATGAATGAATAAACTGTACGGAGGGTCTGCAGCCACAGTTTTATTATTTCGGAATCGGTATTCCATAAAAAGTGCGAATGGAGGAAAAAGGAGCGAGAAACGGTTTTTTGATTGCCGTTCCATGGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAAACTCTCGAACTGTTACCTG</pcr_primer_p1>
		<pcr_primer_p2>TGTCGGAAATATACACTCTTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTAAACTCTCGAACTGTTACCTGTTGCTGATTCGCAAGCTTCTTCGCTTGTTTTTCAGATGAATTGAACATCTTTTGAGTCTTCGCATCAATTTCTCGTCTATCTTCTTTTCTCCAGTTCTGACACTTTATCTGGATGGTATCGTTTGACATGAACCTGCAATATCCGATTCTATTAACATACTTTGATCCCATCAGGTCCGTTTACCATCAAGTTTTTCTGACTCTTGAAGAGTGTATATTTCCGACA</canonical_amplicon>
		<polymorphic_amplicon>CTAAACTCTCGAACTGTTACCTGTTGCTGATTCGCAAGCTTCTTCGCTTGTTTTTCAGATGAATTGAACATCTTTTGAGTCTTCGCATCAATTTCTCGTCTATCTTCTTTTCTCCAGTTCTGACACTTTATCTGGATGGTATCGTTTGACATGAAYCTGCAATATCCGATTCTATTAACATACTTTGATCCCATCAGGTCCGTTTACCATCAAGTTTTTCTGACTCTTGAAGAGTGTATATTTCCGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10651</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>153129</contig_pos>
        <strand>+</strand>
        <context>CACATTTGCA[C/T]ATGTTTACAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAATAATGTCGTTTACCATTTTTCGACGGGCGGTAAACACACATTTGCA</left_flank>
        <right_flank>ATGTTTACAGAAGCTTGCTGGATGCCGTAAGTGAGAGGTGACAAAAAACA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATACAGCTATAAAGCCACTATAAAACTGAGTCGAATGATACATTTTCAGCTGTCCCACATTCAATATTCCTCCTCTTTCTTCCCATGTTTAAATTCCGAGTTGGTCTTATGATTTTTCTCTCAATTATGGGATTTTTCTTTCAATTTAATCAAGGTCTCAACGGATTACAAATCTTTTGATCGAATGAAAAAAATGCTACTGTCTTCGAAACAAAAAGCTTCTCCTGCGACGTTCAGAGCCTTTCACACAGCTGCTCCCGCTCTCTGCGTCTCTCAGCTTCTCCTTGACTTTTCAAAGATGTCAGCTTTTTCTCCATGCCTGCGCCTAGTCTCAGATACTCTCTTGCACTTTTTAATGCAAAAGATTGAAAGTGCGAAAACTATTGACACAGGCCGCACAGTGGCTCTTGCCATTTTTTACTTTCGTTTTAATCATTTCTCGTTTCTTGATAATAATGTCGTTTACCATTTTTCGACGGGCGGTAAACACACATTTGCATATGTTTACAGAAGCTTGCTGGATGCCGTAAGTGAGAGGTGACAAAAAACAAAGTCTCTAATGAATCCTAAATTGAATTTTTTATAAAATCTGAAAAAAATTTTTAATTCGCCCCTGAGCATCTGGGAGCCGCTGCTTTCATTCAATAACCATCTCCCTGAATTTTGTGAACTTTCAAAAGAAGAAAAAAAATTCGAAAAAGATACAGTAACCCGAGATGGAAGAGTTTTTGAAATTTATCACAATTTCGCGAGCTTCTCGTGTACAAAATTCTTTTTGCCTCAGTTTTTTTTCGAATTTTTTTTCAGTTTTTGACATCATTTCGAAGGTCATGTACTTTTGCTTTCCAACTACTCTTGAACAAGTACTTCATTAGACCGATAGCGATCTGAAATATAGGAAATTAAGCGATTACAAAGGTGTCACAATGTTATTTTAAACACGAGTACTTCGGAAGATAGTCATCTTCTTTTGGGCTAAATTCAAACACGAAGACACTTC</canonical>
            <polymorphic>ATACAGCTATAAAGCCACTATAAAACTGAGTCGAATGATACATTTTCAGCTGTCCCACATTCAATATTCCTCCTCTTTCTTCCCATGTTTAAATTCCGAGTTGGTCTTATGATTTTTCTCTCAATTATGGGATTTTTCTTTCAATTTAATCAAGGTCTCAACGGATTACAAATCTTTTGATCGAATGAAAAAAATGCTACTGTCTTCGAAACAAAAAGCTTCTCCTGCGACGTTCAGAGCCTTTCACACAGCTGCTCCCGCTCTCTGCGTCTCTCAGCTTCTCCTTGACTTTTCAAAGATGTCAGCTTTTTCTCCATGCCTGCGCCTAGTCTCAGATACTCTCTTGCACTTTTTAATGCAAAAGATTGAAAGTGCGAAAACTATTGACACAGGCCGCACAGTGGCTCTTGCCATTTTTTACTTTCGTTTTAATCATTTCTCGTTTCTTGATAATAATGTCGTTTACCATTTTTCGACGGGCGGTAAACACACATTTGCAYATGTTTACAGAAGCTTGCTGGATGCCGTAAGTGAGAGGTGACAAAAAACAAAGTCTCTAATGAATCCTAAATTGAATTTTTTATAAAATCTGAAAAAAATTTTTAATTCGCCCCTGAGCATCTGGGAGCCGCTGCTTTCATTCAATAACCATCTCCCTGAATTTTGTGAACTTTCAAAAGAAGAAAAAAAATTCGAAAAAGATACAGTAACCCGAGATGGAAGAGTTTTTGAAATTTATCACAATTTCGCGAGCTTCTCGTGTACAAAATTCTTTTTGCCTCAGTTTTTTTTCGAATTTTTTTTCAGTTTTTGACATCATTTCGAAGGTCATGTACTTTTGCTTTCCAACTACTCTTGAACAAGTACTTCATTAGACCGATAGCGATCTGAAATATAGGAAATTAAGCGATTACAAAGGTGTCACAATGTTATTTTAAACACGAGTACTTCGGAAGATAGTCATCTTCTTTTGGGCTAAATTCAAACACGAAGACACTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATATG</site>
                <isoschizomers>
                    <enzyme>FauNDI</enzyme>
                    <enzyme>NdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCATTTCTCGTTTCTTGATAA</pcr_primer_p1>
		<pcr_primer_p2>TCTTTTGAAAGTTCACAAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATCATTTCTCGTTTCTTGATAATAATGTCGTTTACCATTTTTCGACGGGCGGTAAACACACATTTGCATATGTTTACAGAAGCTTGCTGGATGCCGTAAGTGAGAGGTGACAAAAAACAAAGTCTCTAATGAATCCTAAATTGAATTTTTTATAAAATCTGAAAAAAATTTTTAATTCGCCCCTGAGCATCTGGGAGCCGCTGCTTTCATTCAATAACCATCTCCCTGAATTTTGTGAACTTTCAAAAGA</canonical_amplicon>
		<polymorphic_amplicon>AATCATTTCTCGTTTCTTGATAATAATGTCGTTTACCATTTTTCGACGGGCGGTAAACACACATTTGCAYATGTTTACAGAAGCTTGCTGGATGCCGTAAGTGAGAGGTGACAAAAAACAAAGTCTCTAATGAATCCTAAATTGAATTTTTTATAAAATCTGAAAAAAATTTTTAATTCGCCCCTGAGCATCTGGGAGCCGCTGCTTTCATTCAATAACCATCTCCCTGAATTTTGTGAACTTTCAAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10652</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>161878</contig_pos>
        <strand>+</strand>
        <context>TCAAATTTAC[C/T]TTGAATTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATGCTGAAAATAGTAATCATGAAGGATAGCTCGTGTATCTCAAATTTAC</left_flank>
        <right_flank>TTGAATTTCGTGCGAAAGTTTGTAGTTGGCATTGAATCTGAAGATTCGCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAGATAAGGCAATTGACCTGTTTCGTTGTCTCAAACTTGAAAAGTAAAAGTAACAAGTTATTTGAAAGTTAAACTTTATTGAATCGAAATGAGGTTGCATGACAAAAAAAAAGACAGAGAATAACAACGCACAGCTTTGCAATTGTAATAGGATAATATCTAGGAAGCTTGAATTAAGGTACCATTCACAGCAAACTTCTATGAAATTGAAAGTGAGAGTCAGTTATCGAGGGAAGGTGAAGGAAAGAAAAATCTTGAAAAAAGTGAAAAAGTGAATAGTATAATCTTTATCGAACATTGAGACCGACGTTTTTCGGTGCTGTTCTGTCCAAAATGTTAGTGCTCTTATCGACGGTGAACAGTTGGAAAACCTTCAACGTCTCTTCCATATCTCCGATGAGAACTTCGTCGTATGGTGATCCAACCAGATCCATGATCGGCTCGTTTGATGCTGAAAATAGTAATCATGAAGGATAGCTCGTGTATCTCAAATTTACTTTGAATTTCGTGCGAAAGTTTGTAGTTGGCATTGAATCTGAAGATTCGCAGGAAACCATCGTCAGATGCTGTAAGCATCTCAGAGTAGGGGCGATTGAAGACGATTCCTCCAACTCCGCCAGTTTCGCACACATTGAGTTCTCGTATTTTCTGGCATTGCCTTTTCACGTCCCAGAGTCGAACCGTTCCGTCGTTGATTCCTCCTGCCGTGGCAAGGATTCCATCTCGGAAACTGCAGAATTGAGCTGTTCGGACTTGTCCAGTGTGCTCATCGATGGTGAATAGAGGTTCCTGAAACGTATTTGTCCAGAAAAACTAATTAACACAGGAAACTTACAGGATCTTGAACAACACCATCTCCTCTCGTATGGCGACCATCCCAGACTTTGGCTGTTCGGTCTGAGGATGCACTGACACACATGTTCTCGTCGCTTGACCATTCCAGAGCAGTGATGTCGCGGGAATGACCATTGTCTCCTCCCCACGAGCTTACGACATGC</canonical>
            <polymorphic>ATAAGATAAGGCAATTGACCTGTTTCGTTGTCTCAAACTTGAAAAGTAAAAGTAACAAGTTATTTGAAAGTTAAACTTTATTGAATCGAAATGAGGTTGCATGACAAAAAAAAAGACAGAGAATAACAACGCACAGCTTTGCAATTGTAATAGGATAATATCTAGGAAGCTTGAATTAAGGTACCATTCACAGCAAACTTCTATGAAATTGAAAGTGAGAGTCAGTTATCGAGGGAAGGTGAAGGAAAGAAAAATCTTGAAAAAAGTGAAAAAGTGAATAGTATAATCTTTATCGAACATTGAGACCGACGTTTTTCGGTGCTGTTCTGTCCAAAATGTTAGTGCTCTTATCGACGGTGAACAGTTGGAAAACCTTCAACGTCTCTTCCATATCTCCGATGAGAACTTCGTCGTATGGTGATCCAACCAGATCCATGATCGGCTCGTTTGATGCTGAAAATAGTAATCATGAAGGATAGCTCGTGTATCTCAAATTTACYTTGAATTTCGTGCGAAAGTTTGTAGTTGGCATTGAATCTGAAGATTCGCAGGAAACCATCGTCAGATGCTGTAAGCATCTCAGAGTAGGGGCGATTGAAGACGATTCCTCCAACTCCGCCAGTTTCGCACACATTGAGTTCTCGTATTTTCTGGCATTGCCTTTTCACGTCCCAGAGTCGAACCGTTCCGTCGTTGATTCCTCCTGCCGTGGCAAGGATTCCATCTCGGAAACTGCAGAATTGAGCTGTTCGGACTTGTCCAGTGTGCTCATCGATGGTGAATAGAGGTTCCTGAAACGTATTTGTCCAGAAAAACTAATTAACACAGGAAACTTACAGGATCTTGAACAACACCATCTCCTCTCGTATGGCGACCATCCCAGACTTTGGCTGTTCGGTCTGAGGATGCACTGACACACATGTTCTCGTCGCTTGACCATTCCAGAGCAGTGATGTCGCGGGAATGACCATTGTCTCCTCCCCACGAGCTTACGACATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTTCGTCGTATGGTGAT</pcr_primer_p1>
		<pcr_primer_p2>AGAAAATACGAGAACTCAATGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAACTTCGTCGTATGGTGATCCAACCAGATCCATGATCGGCTCGTTTGATGCTGAAAATAGTAATCATGAAGGATAGCTCGTGTATCTCAAATTTACTTTGAATTTCGTGCGAAAGTTTGTAGTTGGCATTGAATCTGAAGATTCGCAGGAAACCATCGTCAGATGCTGTAAGCATCTCAGAGTAGGGGCGATTGAAGACGATTCCTCCAACTCCGCCAGTTTCGCACACATTGAGTTCTCGTATTTTCT</canonical_amplicon>
		<polymorphic_amplicon>GAACTTCGTCGTATGGTGATCCAACCAGATCCATGATCGGCTCGTTTGATGCTGAAAATAGTAATCATGAAGGATAGCTCGTGTATCTCAAATTTACYTTGAATTTCGTGCGAAAGTTTGTAGTTGGCATTGAATCTGAAGATTCGCAGGAAACCATCGTCAGATGCTGTAAGCATCTCAGAGTAGGGGCGATTGAAGACGATTCCTCCAACTCCGCCAGTTTCGCACACATTGAGTTCTCGTATTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10653</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>162128</contig_pos>
        <strand>+</strand>
        <context>ATTGAGCTGT[G/T]CGGACTTGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCTCCTGCCGTGGCAAGGATTCCATCTCGGAAACTGCAGAATTGAGCTGT</left_flank>
        <right_flank>CGGACTTGTCCAGTGTGCTCATCGATGGTGAATAGAGGTTCCTGAAACGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATCTTGAAAAAAGTGAAAAAGTGAATAGTATAATCTTTATCGAACATTGAGACCGACGTTTTTCGGTGCTGTTCTGTCCAAAATGTTAGTGCTCTTATCGACGGTGAACAGTTGGAAAACCTTCAACGTCTCTTCCATATCTCCGATGAGAACTTCGTCGTATGGTGATCCAACCAGATCCATGATCGGCTCGTTTGATGCTGAAAATAGTAATCATGAAGGATAGCTCGTGTATCTCAAATTTACTTTGAATTTCGTGCGAAAGTTTGTAGTTGGCATTGAATCTGAAGATTCGCAGGAAACCATCGTCAGATGCTGTAAGCATCTCAGAGTAGGGGCGATTGAAGACGATTCCTCCAACTCCGCCAGTTTCGCACACATTGAGTTCTCGTATTTTCTGGCATTGCCTTTTCACGTCCCAGAGTCGAACCGTTCCGTCGTTGATTCCTCCTGCCGTGGCAAGGATTCCATCTCGGAAACTGCAGAATTGAGCTGTTCGGACTTGTCCAGTGTGCTCATCGATGGTGAATAGAGGTTCCTGAAACGTATTTGTCCAGAAAAACTAATTAACACAGGAAACTTACAGGATCTTGAACAACACCATCTCCTCTCGTATGGCGACCATCCCAGACTTTGGCTGTTCGGTCTGAGGATGCACTGACACACATGTTCTCGTCGCTTGACCATTCCAGAGCAGTGATGTCGCGGGAATGACCATTGTCTCCTCCCCACGAGCTTACGACATGCTGGGCAACACGAACATCATGATTAACAATATCTCCTGATTTGTAGCCGCATGTCATCACTCCTTGCTTCTTCCAGGCAATTGACGCTGAAAATTAGATAATTATATTATGGCACAGAAAACAAATATTCTCAACCATCTGGTTAGCGATCGGATAACATTGAAACGAACTTACCACATCTAGATGCTCCTCCGACTCGAAGAGTTCTTAACTCTCTCACGTATTCAGTTGTCTTTGGACGATTAGGATCG</canonical>
            <polymorphic>AAAATCTTGAAAAAAGTGAAAAAGTGAATAGTATAATCTTTATCGAACATTGAGACCGACGTTTTTCGGTGCTGTTCTGTCCAAAATGTTAGTGCTCTTATCGACGGTGAACAGTTGGAAAACCTTCAACGTCTCTTCCATATCTCCGATGAGAACTTCGTCGTATGGTGATCCAACCAGATCCATGATCGGCTCGTTTGATGCTGAAAATAGTAATCATGAAGGATAGCTCGTGTATCTCAAATTTACTTTGAATTTCGTGCGAAAGTTTGTAGTTGGCATTGAATCTGAAGATTCGCAGGAAACCATCGTCAGATGCTGTAAGCATCTCAGAGTAGGGGCGATTGAAGACGATTCCTCCAACTCCGCCAGTTTCGCACACATTGAGTTCTCGTATTTTCTGGCATTGCCTTTTCACGTCCCAGAGTCGAACCGTTCCGTCGTTGATTCCTCCTGCCGTGGCAAGGATTCCATCTCGGAAACTGCAGAATTGAGCTGTKCGGACTTGTCCAGTGTGCTCATCGATGGTGAATAGAGGTTCCTGAAACGTATTTGTCCAGAAAAACTAATTAACACAGGAAACTTACAGGATCTTGAACAACACCATCTCCTCTCGTATGGCGACCATCCCAGACTTTGGCTGTTCGGTCTGAGGATGCACTGACACACATGTTCTCGTCGCTTGACCATTCCAGAGCAGTGATGTCGCGGGAATGACCATTGTCTCCTCCCCACGAGCTTACGACATGCTGGGCAACACGAACATCATGATTAACAATATCTCCTGATTTGTAGCCGCATGTCATCACTCCTTGCTTCTTCCAGGCAATTGACGCTGAAAATTAGATAATTATATTATGGCACAGAAAACAAATATTCTCAACCATCTGGTTAGCGATCGGATAACATTGAAACGAACTTACCACATCTAGATGCTCCTCCGACTCGAAGAGTTCTTAACTCTCTCACGTATTCAGTTGTCTTTGGACGATTAGGATCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>250 149 147 146 142 58 41 25 24 18</canonical_bands>
                <polymorphic_bands>250 173 147 146 142 58 41 25 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGCTGTAAGCATCTCAGAGTAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTGGACAAATACGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGCTGTAAGCATCTCAGAGTAGGGGCGATTGAAGACGATTCCTCCAACTCCGCCAGTTTCGCACACATTGAGTTCTCGTATTTTCTGGCATTGCCTTTTCACGTCCCAGAGTCGAACCGTTCCGTCGTTGATTCCTCCTGCCGTGGCAAGGATTCCATCTCGGAAACTGCAGAATTGAGCTGTTCGGACTTGTCCAGTGTGCTCATCGATGGTGAATAGAGGTTCCTGAAACGTATTTGTCCAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATGCTGTAAGCATCTCAGAGTAGGGGCGATTGAAGACGATTCCTCCAACTCCGCCAGTTTCGCACACATTGAGTTCTCGTATTTTCTGGCATTGCCTTTTCACGTCCCAGAGTCGAACCGTTCCGTCGTTGATTCCTCCTGCCGTGGCAAGGATTCCATCTCGGAAACTGCAGAATTGAGCTGTKCGGACTTGTCCAGTGTGCTCATCGATGGTGAATAGAGGTTCCTGAAACGTATTTGTCCAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10654</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>166871</contig_pos>
        <strand>+</strand>
        <context>TCTTCTTCCC[G/T]ACCAGGACCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAACTAGGAACCAGACAATGGTTCGTCAAATCGATTCACTTCTTCTTCCC</left_flank>
        <right_flank>ACCAGGACCACACAATCCGGTTCTTCGGATTGTCTTCTGGTCGAAATGCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTCCGCCCATTGGCATTCCACCTCCATAACCACCACCCGGATATCCACCACCTCCATACATTCCTGGATAACCTCCGCCTCCGTACATTCCAGGATATCCACCACCCCATTGTCTTTTCACGCGGACCCTGAAAAGATAGGTTTGAAATTGGTAGAATCTGATAAAAGTCTTACCCTTCTGGAGCTCTCCACATCAAATTTTCCGGATGATCCAACTCAAAAGTATGACATAGTGAAACAAGAAAAACGGCAAACAGGAAGAATAATGTATTATTTTGCATTATTGCTAAAATATACAATCGAAGAAAGACAACTGCTGATAGTAGAAAAATTCCACCTCTGACCCTTTTATACTATCCCAATGTCTTACTCTTGCGTCACCATATTTTTCCTTGCTATCAAATTGTCTTTCTTTCCCCGTTCAGTAGGTGACCAAGTTGGCTGAAAAAACTAGGAACCAGACAATGGTTCGTCAAATCGATTCACTTCTTCTTCCCTACCAGGACCACACAATCCGGTTCTTCGGATTGTCTTCTGGTCGAAATGCACTTCTGATGAATCAAGGTAGTCGTTGGGTCAACAGTTGTAATATTAGTAAACAGTTTTAACAATCGGGACTTCATCTGAATCAGATTCTGCTGCAAAACGTAGAGAGAGGACAACCAGGAATTAACGATTTGGTTGGTATTTTGTGGTATTCGAAATATTATTATCGGGGTATTTGCCGAATTGTTAAAACTCAGAAGACAGAATTGGAAATGAGGCGTAACAATTACAAAATTATAAAAGCAGAGAATGAATTTTCAGGCAATGAACCCTCTGTTCAAAAATGAATACTATCTTCTTTTTATTTCTCGCTTCTGTCGTTATGACTACGGCTTCTGCATCAACGGATGTAGAAGCGGGTTTACACAATCTGAATCATCCTAAAAACTTGGGATGGAAAGCTCCAGAAGGGTGAGCAGTCTTACTGTAACTTCGATCAGCTTGAAAAATGA</canonical>
            <polymorphic>GCTTCCGCCCATTGGCATTCCACCTCCATAACCACCACCCGGATATCCACCACCTCCATACATTCCTGGATAACCTCCGCCTCCGTACATTCCAGGATATCCACCACCCCATTGTCTTTTCACGCGGACCCTGAAAAGATAGGTTTGAAATTGGTAGAATCTGATAAAAGTCTTACCCTTCTGGAGCTCTCCACATCAAATTTTCCGGATGATCCAACTCAAAAGTATGACATAGTGAAACAAGAAAAACGGCAAACAGGAAGAATAATGTATTATTTTGCATTATTGCTAAAATATACAATCGAAGAAAGACAACTGCTGATAGTAGAAAAATTCCACCTCTGACCCTTTTATACTATCCCAATGTCTTACTCTTGCGTCACCATATTTTTCCTTGCTATCAAATTGTCTTTCTTTCCCCGTTCAGTAGGTGACCAAGTTGGCTGAAAAAACTAGGAACCAGACAATGGTTCGTCAAATCGATTCACTTCTTCTTCCCKACCAGGACCACACAATCCGGTTCTTCGGATTGTCTTCTGGTCGAAATGCACTTCTGATGAATCAAGGTAGTCGTTGGGTCAACAGTTGTAATATTAGTAAACAGTTTTAACAATCGGGACTTCATCTGAATCAGATTCTGCTGCAAAACGTAGAGAGAGGACAACCAGGAATTAACGATTTGGTTGGTATTTTGTGGTATTCGAAATATTATTATCGGGGTATTTGCCGAATTGTTAAAACTCAGAAGACAGAATTGGAAATGAGGCGTAACAATTACAAAATTATAAAAGCAGAGAATGAATTTTCAGGCAATGAACCCTCTGTTCAAAAATGAATACTATCTTCTTTTTATTTCTCGCTTCTGTCGTTATGACTACGGCTTCTGCATCAACGGATGTAGAAGCGGGTTTACACAATCTGAATCATCCTAAAAACTTGGGATGGAAAGCTCCAGAAGGGTGAGCAGTCTTACTGTAACTTCGATCAGCTTGAAAAATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTAGGAACCAGACAATG</pcr_primer_p1>
		<pcr_primer_p2>AAAATACCAACCAAATCGTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTAGGAACCAGACAATGGTTCGTCAAATCGATTCACTTCTTCTTCCCTACCAGGACCACACAATCCGGTTCTTCGGATTGTCTTCTGGTCGAAATGCACTTCTGATGAATCAAGGTAGTCGTTGGGTCAACAGTTGTAATATTAGTAAACAGTTTTAACAATCGGGACTTCATCTGAATCAGATTCTGCTGCAAAACGTAGAGAGAGGACAACCAGGAATTAACGATTTGGTTGGTATTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTAGGAACCAGACAATGGTTCGTCAAATCGATTCACTTCTTCTTCCCKACCAGGACCACACAATCCGGTTCTTCGGATTGTCTTCTGGTCGAAATGCACTTCTGATGAATCAAGGTAGTCGTTGGGTCAACAGTTGTAATATTAGTAAACAGTTTTAACAATCGGGACTTCATCTGAATCAGATTCTGCTGCAAAACGTAGAGAGAGGACAACCAGGAATTAACGATTTGGTTGGTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10655</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>166519</contig_pos>
        <strand>+</strand>
        <context>GATAGGTTTG[A/T]AATTGGTAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATCCACCACCCCATTGTCTTTTCACGCGGACCCTGAAAAGATAGGTTTG</left_flank>
        <right_flank>AATTGGTAGAATCTGATAAAAGTCTTACCCTTCTGGAGCTCTCCACATCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGTACAAGCCCGTCTTCTCCGAAGAAAAAACACCCACATTCAAGATACTCTATGTGGTAGTAAAAAGACTTCGTTTCCAATGGACTATCCATCATGTCATATCTGTTTCTTGTTCTATTTCACCAGTTTTTAATCTATATTGCACCGTTTCTTTTAGTCAATGTATTTTTTAATTTTTCCGATTCAAATTGAAAAACGTTCATTTTGTCTAGGGACAATAGTGAGTAAAACAGAAAATGAGACCATCGCATTGAATTTCGTGAATATTATCTTCCATAGAATCCAGTATTGAAGCTGCTGAATCCTCCTGATTTTGAGCTCGAATAGCTTCCCCAAGAGCTGCTTCCATAGCTTCCGCCCATTGGCATTCCACCTCCATAACCACCACCCGGATATCCACCACCTCCATACATTCCTGGATAACCTCCGCCTCCGTACATTCCAGGATATCCACCACCCCATTGTCTTTTCACGCGGACCCTGAAAAGATAGGTTTGAAATTGGTAGAATCTGATAAAAGTCTTACCCTTCTGGAGCTCTCCACATCAAATTTTCCGGATGATCCAACTCAAAAGTATGACATAGTGAAACAAGAAAAACGGCAAACAGGAAGAATAATGTATTATTTTGCATTATTGCTAAAATATACAATCGAAGAAAGACAACTGCTGATAGTAGAAAAATTCCACCTCTGACCCTTTTATACTATCCCAATGTCTTACTCTTGCGTCACCATATTTTTCCTTGCTATCAAATTGTCTTTCTTTCCCCGTTCAGTAGGTGACCAAGTTGGCTGAAAAAACTAGGAACCAGACAATGGTTCGTCAAATCGATTCACTTCTTCTTCCCTACCAGGACCACACAATCCGGTTCTTCGGATTGTCTTCTGGTCGAAATGCACTTCTGATGAATCAAGGTAGTCGTTGGGTCAACAGTTGTAATATTAGTAAACAGTTTTAACAATCGGGACTTCATCTGAATCAGATTCTGCTGCAAAA</canonical>
            <polymorphic>CAAGTACAAGCCCGTCTTCTCCGAAGAAAAAACACCCACATTCAAGATACTCTATGTGGTAGTAAAAAGACTTCGTTTCCAATGGACTATCCATCATGTCATATCTGTTTCTTGTTCTATTTCACCAGTTTTTAATCTATATTGCACCGTTTCTTTTAGTCAATGTATTTTTTAATTTTTCCGATTCAAATTGAAAAACGTTCATTTTGTCTAGGGACAATAGTGAGTAAAACAGAAAATGAGACCATCGCATTGAATTTCGTGAATATTATCTTCCATAGAATCCAGTATTGAAGCTGCTGAATCCTCCTGATTTTGAGCTCGAATAGCTTCCCCAAGAGCTGCTTCCATAGCTTCCGCCCATTGGCATTCCACCTCCATAACCACCACCCGGATATCCACCACCTCCATACATTCCTGGATAACCTCCGCCTCCGTACATTCCAGGATATCCACCACCCCATTGTCTTTTCACGCGGACCCTGAAAAGATAGGTTTGWAATTGGTAGAATCTGATAAAAGTCTTACCCTTCTGGAGCTCTCCACATCAAATTTTCCGGATGATCCAACTCAAAAGTATGACATAGTGAAACAAGAAAAACGGCAAACAGGAAGAATAATGTATTATTTTGCATTATTGCTAAAATATACAATCGAAGAAAGACAACTGCTGATAGTAGAAAAATTCCACCTCTGACCCTTTTATACTATCCCAATGTCTTACTCTTGCGTCACCATATTTTTCCTTGCTATCAAATTGTCTTTCTTTCCCCGTTCAGTAGGTGACCAAGTTGGCTGAAAAAACTAGGAACCAGACAATGGTTCGTCAAATCGATTCACTTCTTCTTCCCTACCAGGACCACACAATCCGGTTCTTCGGATTGTCTTCTGGTCGAAATGCACTTCTGATGAATCAAGGTAGTCGTTGGGTCAACAGTTGTAATATTAGTAAACAGTTTTAACAATCGGGACTTCATCTGAATCAGATTCTGCTGCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATACATTCCTGGATAACCT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTCGATTGTATATTTTAGCA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CCATACATTCCTGGATAACCTCCGCCTCCGTACATTCCAGGATATCCACCACCCCATTGTCTTTTCACGCGGACCCTGAAAAGATAGGTTTGAAATTGGTAGAATCTGATAAAAGTCTTACCCTTCTGGAGCTCTCCACATCAAATTTTCCGGATGATCCAACTCAAAAGTATGACATAGTGAAACAAGAAAAACGGCAAACAGGAAGAATAATGTATTATTTTGCATTATTGCTAAAATATACAATCGAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>CCATACATTCCTGGATAACCTCCGCCTCCGTACATTCCAGGATATCCACCACCCCATTGTCTTTTCACGCGGACCCTGAAAAGATAGGTTTGWAATTGGTAGAATCTGATAAAAGTCTTACCCTTCTGGAGCTCTCCACATCAAATTTTCCGGATGATCCAACTCAAAAGTATGACATAGTGAAACAAGAAAAACGGCAAACAGGAAGAATAATGTATTATTTTGCATTATTGCTAAAATATACAATCGAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10656</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>222086</contig_pos>
        <strand></strand>
        <context>TCTAAACATT[C/A]TGTTGTAACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GTAGTGAAAGTTGCAAAATGTTCGTCTATACATAGTTTGATCTAAACATT</left_flank>
        <right_flank>TGTTGTAACACTTTCCTCCAATCATGAACAGGTTTCAGGTCCTAACTTTC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATATATTCATTTTGGTTTCATCTGGAGTGGCTCTTGGAATATTTTTCAGTTTTGTGGAGGTTTCGTACGGAAGGTGGCTAGCTAACAAAGGGTGAGAGTTTCAAAAAAAAAGTTTTGAAAATTGAAAAGTATTCCAGACGACGTCGAATAATTGTTCACCGTTACTTCCACAAATGGCATGAGCTAACATTTGGAAAAAAAAGAAGGACATATCGATTGAAATATAATTTGGATCGATTGATAATAAGGAGAGGATTTTCTGGATTAGAAAGAGGCACATTCCAAGAAATGAGGGAAAGACGACAGATCAGAGGACTACCGACATCAAGAATTGATCAATATTGTTTTTGGCCTGATTTGGATTTCAGGGATAAACCAGTGGTTCTATTCTGTTCTCGATGCAGAGTAAGTTGATCAGTGAGGCGAAAAAGAAATAGGAAAGTGAAGGTAGTGAAAGTTGCAAAATGTTCGTCTATACATAGTTTGATCTAAACATTCTGTTGTAACACTTTCCTCCAATCATGAACAGGTTTCAGGTCCTAACTTTCTATAGTTTCATTTTATCAATTTTCTGAGAAAGACATATATTTAGGAGCAGTCTGTGTTTTTCGAAAGATATTTTTCGAAAACGGCAAACTTTGTAAAACGTTTTAAACGTTCGACTCACTAAGCTGGACCCAGTGGGAAAGACCATTCTGTCATGGTGGCCTGACTTTTGCAAGTTGAGTTTTTTAGGACATCAACTTTTATGGCCTACAAATGACCTGATATTTACCATTGTGGGATTCCTAGGCTACTAACCATGGTAGAAAACTCAACCTGTGAAAGTTAGGTCACCATGTTAAGAAGGTCTTGAAAACCCACCAAGTCTATCTCAGGTCATTTCTTTGTCATAACAATTGGTAGCCTAGAAAACTCAAATGGTGGAAGTTAGGCTTCCATGTTCAATGACCTATAGATAACACATCAGGTGCATGTTAGATCATTTCTGGACCATC</canonical>
            <polymorphic>GGATATATTCATTTTGGTTTCATCTGGAGTGGCTCTTGGAATATTTTTCAGTTTTGTGGAGGTTTCGTACGGAAGGTGGCTAGCTAACAAAGGGTGAGAGTTTCAAAAAAAAAGTTTTGAAAATTGAAAAGTATTCCAGACGACGTCGAATAATTGTTCACCGTTACTTCCACAAATGGCATGAGCTAACATTTGGAAAAAAAAGAAGGACATATCGATTGAAATATAATTTGGATCGATTGATAATAAGGAGAGGATTTTCTGGATTAGAAAGAGGCACATTCCAAGAAATGAGGGAAAGACGACAGATCAGAGGACTACCGACATCAAGAATTGATCAATATTGTTTTTGGCCTGATTTGGATTTCAGGGATAAACCAGTGGTTCTATTCTGTTCTCGATGCAGAGTAAGTTGATCAGTGAGGCGAAAAAGAAATAGGAAAGTGAAGGTAGTGAAAGTTGCAAAATGTTCGTCTATACATAGTTTGATCTAAACATTMTGTTGTAACACTTTCCTCCAATCATGAACAGGTTTCAGGTCCTAACTTTCTATAGTTTCATTTTATCAATTTTCTGAGAAAGACATATATTTAGGAGCAGTCTGTGTTTTTCGAAAGATATTTTTCGAAAACGGCAAACTTTGTAAAACGTTTTAAACGTTCGACTCACTAAGCTGGACCCAGTGGGAAAGACCATTCTGTCATGGTGGCCTGACTTTTGCAAGTTGAGTTTTTTAGGACATCAACTTTTATGGCCTACAAATGACCTGATATTTACCATTGTGGGATTCCTAGGCTACTAACCATGGTAGAAAACTCAACCTGTGAAAGTTAGGTCACCATGTTAAGAAGGTCTTGAAAACCCACCAAGTCTATCTCAGGTCATTTCTTTGTCATAACAATTGGTAGCCTAGAAAACTCAAATGGTGGAAGTTAGGCTTCCATGTTCAATGACCTATAGATAACACATCAGGTGCATGTTAGATCATTTCTGGACCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGTGGTTCTATTCTGTTCTC</pcr_primer_p1>
		<pcr_primer_p2>AAATATCTTTCGAAAAACACAGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CCAGTGGTTCTATTCTGTTCTCGATGCAGAGTAAGTTGATCAGTGAGGCGAAAAAGAAATAGGAAAGTGAAGGTAGTGAAAGTTGCAAAATGTTCGTCTATACATAGTTTGATCTAAACATTCTGTTGTAACACTTTCCTCCAATCATGAACAGGTTTCAGGTCCTAACTTTCTATAGTTTCATTTTATCAATTTTCTGAGAAAGACATATATTTAGGAGCAGTCTGTGTTTTTCGAAAGATATTT</canonical_amplicon>
		<polymorphic_amplicon>CCAGTGGTTCTATTCTGTTCTCGATGCAGAGTAAGTTGATCAGTGAGGCGAAAAAGAAATAGGAAAGTGAAGGTAGTGAAAGTTGCAAAATGTTCGTCTATACATAGTTTGATCTAAACATTMTGTTGTAACACTTTCCTCCAATCATGAACAGGTTTCAGGTCCTAACTTTCTATAGTTTCATTTTATCAATTTTCTGAGAAAGACATATATTTAGGAGCAGTCTGTGTTTTTCGAAAGATATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10658</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>225241</contig_pos>
        <strand>+</strand>
        <context>CCCATCTGGA[A/T]AACAGAATCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAATTTTCAAAATATTTAGAACTTTTTTGAACTGACCGTCCCATCTGGA</left_flank>
        <right_flank>AACAGAATCTGACAACCAAAGTGTGTCCACGATAATTGAACCCGTTGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTGCAGAATCATGAATACGTTGAGTGTAATATGAGCTAGTGGACAGACACATTGTATTCGAAACCACTTTGACATTTCGATTGAACATTCGAATGAATCCAGTTGGCCATTGAGTCAATGCTTCACTAATGAAAATTGAAGATGTGGCCGAAGGAATTCGATTTGAAAAAAGAGTTCGCATCGATTGAAGAACATTGTGGTACGGTAGATAGGCGTGAGTTTTCAGAAGATTTACGAGTTCTGTCTCAAATTTTTGCAATACTTCGTATTCGGCAATAGTCCAACATTCAGAAGAGAGAGTCTGAAAATTGAAAAATTTTGAATAAATATTCTAAATCCATTTTTTACATCTTGAACGATTTCTCTCTGCTCGAAAAGTCTTCCTTTCGCATTGTTGCTACATTGGACCAATTCAGTCAGGGCTGTTTCATCTCCGTACTGAAAAGTAGAATTTTCAAAATATTTAGAACTTTTTTGAACTGACCGTCCCATCTGGAAAACAGAATCTGACAACCAAAGTGTGTCCACGATAATTGAACCCGTTGAAAACTTTGAAAACTTTCAACGCATCTTCTGGACGATAGAAATTGAGAAACCATTTTCCTGGAGGGACAACAACGACATCTTGAATCGAAATATCCTCCCGAATCTCTTTTTTAACTAGATTCAAAATGATATTCTTATGAACAGTTGGAAGACCAGGAACATTCAAAAACAGAAGTTTGGCACGAACAAGAGTGTCTGACCTAAGCATATCGGAAACTCTTACATCACGAGATGGTGCTGAATTCTGAGAATCTTCAGAATAGACACGTGTCCAATAATCCCATCCAGATTGAGATGATGGCTTCTGAGTGACTGAAGGAGTGGGAGATGGAGAAGCATTGACGTGACGAGTCTTTTTCTGAATTTTGATGTTCTGACAAAAAAGACAAATTCAGGCGAGTTACCGGAATTGTAGTTCGAAACGATGAGAAGGTTAGAGTTCGCATTGTTGG</canonical>
            <polymorphic>CATTGCAGAATCATGAATACGTTGAGTGTAATATGAGCTAGTGGACAGACACATTGTATTCGAAACCACTTTGACATTTCGATTGAACATTCGAATGAATCCAGTTGGCCATTGAGTCAATGCTTCACTAATGAAAATTGAAGATGTGGCCGAAGGAATTCGATTTGAAAAAAGAGTTCGCATCGATTGAAGAACATTGTGGTACGGTAGATAGGCGTGAGTTTTCAGAAGATTTACGAGTTCTGTCTCAAATTTTTGCAATACTTCGTATTCGGCAATAGTCCAACATTCAGAAGAGAGAGTCTGAAAATTGAAAAATTTTGAATAAATATTCTAAATCCATTTTTTACATCTTGAACGATTTCTCTCTGCTCGAAAAGTCTTCCTTTCGCATTGTTGCTACATTGGACCAATTCAGTCAGGGCTGTTTCATCTCCGTACTGAAAAGTAGAATTTTCAAAATATTTAGAACTTTTTTGAACTGACCGTCCCATCTGGAWAACAGAATCTGACAACCAAAGTGTGTCCACGATAATTGAACCCGTTGAAAACTTTGAAAACTTTCAACGCATCTTCTGGACGATAGAAATTGAGAAACCATTTTCCTGGAGGGACAACAACGACATCTTGAATCGAAATATCCTCCCGAATCTCTTTTTTAACTAGATTCAAAATGATATTCTTATGAACAGTTGGAAGACCAGGAACATTCAAAAACAGAAGTTTGGCACGAACAAGAGTGTCTGACCTAAGCATATCGGAAACTCTTACATCACGAGATGGTGCTGAATTCTGAGAATCTTCAGAATAGACACGTGTCCAATAATCCCATCCAGATTGAGATGATGGCTTCTGAGTGACTGAAGGAGTGGGAGATGGAGAAGCATTGACGTGACGAGTCTTTTTCTGAATTTTGATGTTCTGACAAAAAAGACAAATTCAGGCGAGTTACCGGAATTGTAGTTCGAAACGATGAGAAGGTTAGAGTTCGCATTGTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTACATCTTGAACGATTTCTC</pcr_primer_p1>
		<pcr_primer_p2>CTCAATTTCTATCGTCCAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTACATCTTGAACGATTTCTCTCTGCTCGAAAAGTCTTCCTTTCGCATTGTTGCTACATTGGACCAATTCAGTCAGGGCTGTTTCATCTCCGTACTGAAAAGTAGAATTTTCAAAATATTTAGAACTTTTTTGAACTGACCGTCCCATCTGGAAAACAGAATCTGACAACCAAAGTGTGTCCACGATAATTGAACCCGTTGAAAACTTTGAAAACTTTCAACGCATCTTCTGGACGATAGAAATTGAG</canonical_amplicon>
		<polymorphic_amplicon>TTTTACATCTTGAACGATTTCTCTCTGCTCGAAAAGTCTTCCTTTCGCATTGTTGCTACATTGGACCAATTCAGTCAGGGCTGTTTCATCTCCGTACTGAAAAGTAGAATTTTCAAAATATTTAGAACTTTTTTGAACTGACCGTCCCATCTGGAWAACAGAATCTGACAACCAAAGTGTGTCCACGATAATTGAACCCGTTGAAAACTTTGAAAACTTTCAACGCATCTTCTGGACGATAGAAATTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10660</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>224772</contig_pos>
        <strand>+</strand>
        <context>GTTGAGTGTA[A/G]TATGAGCTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAATTCTAGGATACCTTCCATTGCAGAATCATGAATACGTTGAGTGTA</left_flank>
        <right_flank>TATGAGCTAGTGGACAGACACATTGTATTCGAAACCACTTTGACATTTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATACATCGGTACAGTCATCTTGGTATGTCTGAAATAGTGAAAAATATGAAAAATCAAGATTCGGAGAGATCGGTATTACCGCCAGATTGTCAATGATTTTTTCATGATGAACTGGGTTACTGGACAAGTATAAAACACGGTTGACAATAGCAACTCCAGATGAAATATCAGTGAGTAGAGAAGCAAGTTCTTCGGCAGACTTTGGCCAAGTTCCACGGAGGGATTGAGCCAGAATACGAATTGGAGCATCAATCTGAAAATAAAATTAAAAGTTACTAAAATTAATAAAGAATACAAACATCAATGTTCTGTGGTCCAAAGTGTCCGAGGAATGAATGGATGTATTGAATCAATTGAATATCACTTCGAATGTCTTCTGGAACCATTGGCTCCCATGAATTGCGATGAACAGAGCAGCCCCCTGAAAACTTATTCATTTGAAAAACTTTGAAATTCTAGGATACCTTCCATTGCAGAATCATGAATACGTTGAGTGTAATATGAGCTAGTGGACAGACACATTGTATTCGAAACCACTTTGACATTTCGATTGAACATTCGAATGAATCCAGTTGGCCATTGAGTCAATGCTTCACTAATGAAAATTGAAGATGTGGCCGAAGGAATTCGATTTGAAAAAAGAGTTCGCATCGATTGAAGAACATTGTGGTACGGTAGATAGGCGTGAGTTTTCAGAAGATTTACGAGTTCTGTCTCAAATTTTTGCAATACTTCGTATTCGGCAATAGTCCAACATTCAGAAGAGAGAGTCTGAAAATTGAAAAATTTTGAATAAATATTCTAAATCCATTTTTTACATCTTGAACGATTTCTCTCTGCTCGAAAAGTCTTCCTTTCGCATTGTTGCTACATTGGACCAATTCAGTCAGGGCTGTTTCATCTCCGTACTGAAAAGTAGAATTTTCAAAATATTTAGAACTTTTTTGAACTGACCGTCCCATCTGGAAAACAGAATCTGACAACCAAAGTGTGTCCACG</canonical>
            <polymorphic>TATACATCGGTACAGTCATCTTGGTATGTCTGAAATAGTGAAAAATATGAAAAATCAAGATTCGGAGAGATCGGTATTACCGCCAGATTGTCAATGATTTTTTCATGATGAACTGGGTTACTGGACAAGTATAAAACACGGTTGACAATAGCAACTCCAGATGAAATATCAGTGAGTAGAGAAGCAAGTTCTTCGGCAGACTTTGGCCAAGTTCCACGGAGGGATTGAGCCAGAATACGAATTGGAGCATCAATCTGAAAATAAAATTAAAAGTTACTAAAATTAATAAAGAATACAAACATCAATGTTCTGTGGTCCAAAGTGTCCGAGGAATGAATGGATGTATTGAATCAATTGAATATCACTTCGAATGTCTTCTGGAACCATTGGCTCCCATGAATTGCGATGAACAGAGCAGCCCCCTGAAAACTTATTCATTTGAAAAACTTTGAAATTCTAGGATACCTTCCATTGCAGAATCATGAATACGTTGAGTGTARTATGAGCTAGTGGACAGACACATTGTATTCGAAACCACTTTGACATTTCGATTGAACATTCGAATGAATCCAGTTGGCCATTGAGTCAATGCTTCACTAATGAAAATTGAAGATGTGGCCGAAGGAATTCGATTTGAAAAAAGAGTTCGCATCGATTGAAGAACATTGTGGTACGGTAGATAGGCGTGAGTTTTCAGAAGATTTACGAGTTCTGTCTCAAATTTTTGCAATACTTCGTATTCGGCAATAGTCCAACATTCAGAAGAGAGAGTCTGAAAATTGAAAAATTTTGAATAAATATTCTAAATCCATTTTTTACATCTTGAACGATTTCTCTCTGCTCGAAAAGTCTTCCTTTCGCATTGTTGCTACATTGGACCAATTCAGTCAGGGCTGTTTCATCTCCGTACTGAAAAGTAGAATTTTCAAAATATTTAGAACTTTTTTGAACTGACCGTCCCATCTGGAAAACAGAATCTGACAACCAAAGTGTGTCCACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTCTTCTGGAACCATTG</pcr_primer_p1>
		<pcr_primer_p2>CCACATCTTCAATTTTCATTAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATGTCTTCTGGAACCATTGGCTCCCATGAATTGCGATGAACAGAGCAGCCCCCTGAAAACTTATTCATTTGAAAAACTTTGAAATTCTAGGATACCTTCCATTGCAGAATCATGAATACGTTGAGTGTAATATGAGCTAGTGGACAGACACATTGTATTCGAAACCACTTTGACATTTCGATTGAACATTCGAATGAATCCAGTTGGCCATTGAGTCAATGCTTCACTAATGAAAATTGAAGATGTGG</canonical_amplicon>
		<polymorphic_amplicon>AATGTCTTCTGGAACCATTGGCTCCCATGAATTGCGATGAACAGAGCAGCCCCCTGAAAACTTATTCATTTGAAAAACTTTGAAATTCTAGGATACCTTCCATTGCAGAATCATGAATACGTTGAGTGTARTATGAGCTAGTGGACAGACACATTGTATTCGAAACCACTTTGACATTTCGATTGAACATTCGAATGAATCCAGTTGGCCATTGAGTCAATGCTTCACTAATGAAAATTGAAGATGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10663</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>240931</contig_pos>
        <strand>+</strand>
        <context>TTCTTACGAA[C/T]TTCTTCGGCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGCGAATAGTTATCTCCAATCAGATTTCCATCGTGCAAATTCTTACGAA</left_flank>
        <right_flank>TTCTTCGGCGTCCGCAGCAGACAACATGTTCACAAATCTGAAAATGTTGA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACTCGCTTGATGGAGCGTGGCGACTCTCGGAACACACCATCGTAACCGATCTGAAGCTCCGAATCGAAAGCCACTAGTTGTGCATACGAATTCATTTTTTCATGCATCGCATTGTACTTCTCATTTGACTGTGCATCGTTGATACGGAGAATCGTTAGAGCGAAAACATCCTTAGCTGCTGACGACGATGGAAGATAGTCGACAACTTCAACCTAAAATCGGAATTCACATTTTCAAACAATTAACAAAATGTTTACCTCGATATCTTTGTTGAGAGGAAGCCATGAAGAAGACAGATGAACTGGTCCAGATTTTGCTGGTGGCGAAGAAAGAAGCTTTTGAACGGAAATGGAAGCCATTGGAAGAAGAGCTCCACCGATGTTCTTATGGTCACTGACCTGTAATTTTGAATAGAGGAATAATTGCTAGAAAAACTTGGCGGACCTTAAGCGAATAGTTATCTCCAATCAGATTTCCATCGTGCAAATTCTTACGAACTTCTTCGGCGTCCGCAGCAGACAACATGTTCACAAATCTGAAAATGTTGAAAGAATCATTTGAAGCTGCCTAATCTATCTACCCAAGCTGCATATCATTTGATTGTCCTGCAACACGGCAATATCCGACTCTTCCAAAGACTTGGAAAATGTGGAACAAGTTCCAATCGTTCCATTCCTTTGGAACATTGCGAATGTGAAACCCGGCGTCTTTGAGATAGAAAGCAGTTGAGCTGGAAGCCATTTCTGAAAGAAACGAAACAGGAATAATCACCAAAATAAGTTCGAAAAACGGAAAACAAAATCGCTTTGAAAATGGAAGTGATGCGTTTGGCGCCGAATTTTTCTCAAAGCGCGGTGAAGCGCGTTTGCGTTTGTGAAGGGCGGAGCCGGGAGACCCCACAAATTCCGGAGAAAAAAATTTCGGCAAAAAATTCGGGGGGTACAATGATTCAGGGGTACAAGGGAGTACAACTGATTTAGGGGTACAAAATTGGTGAT</canonical>
            <polymorphic>GAACTCGCTTGATGGAGCGTGGCGACTCTCGGAACACACCATCGTAACCGATCTGAAGCTCCGAATCGAAAGCCACTAGTTGTGCATACGAATTCATTTTTTCATGCATCGCATTGTACTTCTCATTTGACTGTGCATCGTTGATACGGAGAATCGTTAGAGCGAAAACATCCTTAGCTGCTGACGACGATGGAAGATAGTCGACAACTTCAACCTAAAATCGGAATTCACATTTTCAAACAATTAACAAAATGTTTACCTCGATATCTTTGTTGAGAGGAAGCCATGAAGAAGACAGATGAACTGGTCCAGATTTTGCTGGTGGCGAAGAAAGAAGCTTTTGAACGGAAATGGAAGCCATTGGAAGAAGAGCTCCACCGATGTTCTTATGGTCACTGACCTGTAATTTTGAATAGAGGAATAATTGCTAGAAAAACTTGGCGGACCTTAAGCGAATAGTTATCTCCAATCAGATTTCCATCGTGCAAATTCTTACGAAYTTCTTCGGCGTCCGCAGCAGACAACATGTTCACAAATCTGAAAATGTTGAAAGAATCATTTGAAGCTGCCTAATCTATCTACCCAAGCTGCATATCATTTGATTGTCCTGCAACACGGCAATATCCGACTCTTCCAAAGACTTGGAAAATGTGGAACAAGTTCCAATCGTTCCATTCCTTTGGAACATTGCGAATGTGAAACCCGGCGTCTTTGAGATAGAAAGCAGTTGAGCTGGAAGCCATTTCTGAAAGAAACGAAACAGGAATAATCACCAAAATAAGTTCGAAAAACGGAAAACAAAATCGCTTTGAAAATGGAAGTGATGCGTTTGGCGCCGAATTTTTCTCAAAGCGCGGTGAAGCGCGTTTGCGTTTGTGAAGGGCGGAGCCGGGAGACCCCACAAATTCCGGAGAAAAAAATTTCGGCAAAAAATTCGGGGGGTACAATGATTCAGGGGTACAAGGGAGTACAACTGATTTAGGGGTACAAAATTGGTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCACTGACCTGTAATTTTGAAT</pcr_primer_p1>
		<pcr_primer_p2>TCTTTGGAAGAGTCGGATATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCACTGACCTGTAATTTTGAATAGAGGAATAATTGCTAGAAAAACTTGGCGGACCTTAAGCGAATAGTTATCTCCAATCAGATTTCCATCGTGCAAATTCTTACGAACTTCTTCGGCGTCCGCAGCAGACAACATGTTCACAAATCTGAAAATGTTGAAAGAATCATTTGAAGCTGCCTAATCTATCTACCCAAGCTGCATATCATTTGATTGTCCTGCAACACGGCAATATCCGACTCTTCCAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GTCACTGACCTGTAATTTTGAATAGAGGAATAATTGCTAGAAAAACTTGGCGGACCTTAAGCGAATAGTTATCTCCAATCAGATTTCCATCGTGCAAATTCTTACGAAYTTCTTCGGCGTCCGCAGCAGACAACATGTTCACAAATCTGAAAATGTTGAAAGAATCATTTGAAGCTGCCTAATCTATCTACCCAAGCTGCATATCATTTGATTGTCCTGCAACACGGCAATATCCGACTCTTCCAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10664</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>246271</contig_pos>
        <strand>+</strand>
        <context>AGGTAGAAAA[G/T]GAAGATCCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTCTTCTAGCAAAAATTGAATTCCATCTCTATTTGGAAAAGGTAGAAAA</left_flank>
        <right_flank>GAAGATCCAAATTTTTCCTGCCATTATAAAAATTACATGTTTTCAATATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTCTTCAGGCCACGCGCTATTTCTTTAAGCTGGTTATTAGTTCTAACCTACATTCACCCGTTCGTTTGGCATGCGAATGGGCTGGGTGGCAATAGGAATGGCAGAGAAAAAGGAGACGGATTAATTTGAGGAACGCACGCATGGGGGAGATTTGTGCAGATGGATATTTATTAGGAATGGGAAACGGGAGTAAACAAAAATAGAAGAATTTAGTAGAAATTTTCGAATGGATCCACGGTGGATGACCAGTTGGGAAGCTAAAAAGGTTGAAACTTGAAAAAAGAAACTTTAAAAAGACAGACAAGAAGTTTACCTTTTCATAAACCCTCTCACAGATTGCTCCATTCCTCTCCCAAACGATTCTTAGATTTCCATTATTCTGGATTTTTCTCGTCATTTTTGAAAAAATCGTTCCATCAGGTCCACATTGAGTGCTGATCAGTTTATTGTCTTCTAGCAAAAATTGAATTCCATCTCTATTTGGAAAAGGTAGAAAATGAAGATCCAAATTTTTCCTGCCATTATAAAAATTACATGTTTTCAATATTTTTCCTTTGAGACGGAAACAAATGTTTGAATAATGGATTCTTCTAGCTTCTTTCCAATTAATATCTGGTTGGGAATCAAGAAATGCATTGATGTTGGAGGAGCTCAAAAGTTTCCATTCTCCGTTTATTCCATCTTGAATAGATGGATTCTGAAAATAAACTTTCAATTGAAAATAGTTTTTTCTGGAGCTTATTGGAATTTTGGAAGCTCCCAAATTCCTTTGAATGATTTTAAATTCAGAAACCATTTGATGCTCTGCTGGACCATCAATCCATTCAAAACTTGAATCCATTAGGTAAAAAGTAGCTTTACAATACAGAAACGAATATCACAATGTAAAAGAAGAACAAAGAGGTACTACTGCTACTCGAGAATATTCTTCTTCTTCTCCGTTCCTCTTTTTCTCTTTTTTGTTTAATCTGTACACAAATCATCTGACACTGTTCTTT</canonical>
            <polymorphic>ACCTCTTCAGGCCACGCGCTATTTCTTTAAGCTGGTTATTAGTTCTAACCTACATTCACCCGTTCGTTTGGCATGCGAATGGGCTGGGTGGCAATAGGAATGGCAGAGAAAAAGGAGACGGATTAATTTGAGGAACGCACGCATGGGGGAGATTTGTGCAGATGGATATTTATTAGGAATGGGAAACGGGAGTAAACAAAAATAGAAGAATTTAGTAGAAATTTTCGAATGGATCCACGGTGGATGACCAGTTGGGAAGCTAAAAAGGTTGAAACTTGAAAAAAGAAACTTTAAAAAGACAGACAAGAAGTTTACCTTTTCATAAACCCTCTCACAGATTGCTCCATTCCTCTCCCAAACGATTCTTAGATTTCCATTATTCTGGATTTTTCTCGTCATTTTTGAAAAAATCGTTCCATCAGGTCCACATTGAGTGCTGATCAGTTTATTGTCTTCTAGCAAAAATTGAATTCCATCTCTATTTGGAAAAGGTAGAAAAKGAAGATCCAAATTTTTCCTGCCATTATAAAAATTACATGTTTTCAATATTTTTCCTTTGAGACGGAAACAAATGTTTGAATAATGGATTCTTCTAGCTTCTTTCCAATTAATATCTGGTTGGGAATCAAGAAATGCATTGATGTTGGAGGAGCTCAAAAGTTTCCATTCTCCGTTTATTCCATCTTGAATAGATGGATTCTGAAAATAAACTTTCAATTGAAAATAGTTTTTTCTGGAGCTTATTGGAATTTTGGAAGCTCCCAAATTCCTTTGAATGATTTTAAATTCAGAAACCATTTGATGCTCTGCTGGACCATCAATCCATTCAAAACTTGAATCCATTAGGTAAAAAGTAGCTTTACAATACAGAAACGAATATCACAATGTAAAAGAAGAACAAAGAGGTACTACTGCTACTCGAGAATATTCTTCTTCTTCTCCGTTCCTCTTTTTCTCTTTTTTGTTTAATCTGTACACAAATCATCTGACACTGTTCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTACCTTTTCATAAACCCTCTC</pcr_primer_p1>
		<pcr_primer_p2>TCAAAGGAAAAATATTGAAAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTACCTTTTCATAAACCCTCTCACAGATTGCTCCATTCCTCTCCCAAACGATTCTTAGATTTCCATTATTCTGGATTTTTCTCGTCATTTTTGAAAAAATCGTTCCATCAGGTCCACATTGAGTGCTGATCAGTTTATTGTCTTCTAGCAAAAATTGAATTCCATCTCTATTTGGAAAAGGTAGAAAATGAAGATCCAAATTTTTCCTGCCATTATAAAAATTACATGTTTTCAATATTTTTCCTTTGA</canonical_amplicon>
		<polymorphic_amplicon>TTTACCTTTTCATAAACCCTCTCACAGATTGCTCCATTCCTCTCCCAAACGATTCTTAGATTTCCATTATTCTGGATTTTTCTCGTCATTTTTGAAAAAATCGTTCCATCAGGTCCACATTGAGTGCTGATCAGTTTATTGTCTTCTAGCAAAAATTGAATTCCATCTCTATTTGGAAAAGGTAGAAAAKGAAGATCCAAATTTTTCCTGCCATTATAAAAATTACATGTTTTCAATATTTTTCCTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10665</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>325828</contig_pos>
        <strand>+</strand>
        <context>TGATGGAAGA[A/G]AATTGAGTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGGCTACTCAATGGTGCAAAACTACTGAATGATAACAGGTGATGGAAGA</left_flank>
        <right_flank>AATTGAGTAAACACCCATTGTGTTTTTTTCGTGTCATGAACTCAATCGTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAATATATAAAATCATGTCCTTTTTACCAGTCTGAAACCACCTTTTAAATTCAACATTCAAATACCCTCCATTTTTCAGAAAATGATGTTTTTTGTTATCTAAGGAACAAAACCTTTCCAAAAGTTTATCTAAATTTTTCTTTTCCCCCAAATTCCAATGATTACATGCCTTCGATTCTTTACATGACATTAAAATGATTCTGAAGTTGATGTGTATTGCACCGGTCAGCACAACTTCTTATAATTTTCTGAAATTTTTTCGAGAGGTAAAAAAAATCGAGACAGCTGATAAGATGCTCAGTTTCTCCGAATTGCGTTACTGATGACGATTATGCCTGATTCTAATCAGCAACTGCACCGTAAATACAGTGTTTCAATGAAATCAGTCGGCTCTAAAAACTAGAAAATCTCATTTAGGCCGTTTCGTTTGTTTTAAAATGATTCATTTAGGCTACTCAATGGTGCAAAACTACTGAATGATAACAGGTGATGGAAGAGAATTGAGTAAACACCCATTGTGTTTTTTTCGTGTCATGAACTCAATCGTTTTCAGCACGTCATTATTCAGTTTTACGAGCGATGAGGTGTTCCGTTATCAGCCTGTGGAAATGACATTTTAACTGGGACCGTTTCGAGGAAAGAATCTATTCTAGTGGTGGAGGGGCATACTGTAGTTTCAGGAAACCGTAAGACTAGAAGTAAAGGTCTTGATGGGTAAACCTTAAGGAAAAACTTGCTTTGGAGAAGCCTGTAAAATGAGATCGAAGTTGAATGAAATTTGAAAACCAGCCTAGATATAGAATGAAAACCACATTTAAATATGATAATCTGTAAATCGAGTACAAAACTGTTTGGAAAAAATACATGATCTATCAAAATTACGGGGAAAAACAACCTTGAAACCTGTAATAGGAGGGAGGGCCCACTAATATTGAGCTAATTTATCTCGATTACTGTTAATGATATAAAATAGTTGTGAACTAATAAATTGTTTATCA</canonical>
            <polymorphic>GATAATATATAAAATCATGTCCTTTTTACCAGTCTGAAACCACCTTTTAAATTCAACATTCAAATACCCTCCATTTTTCAGAAAATGATGTTTTTTGTTATCTAAGGAACAAAACCTTTCCAAAAGTTTATCTAAATTTTTCTTTTCCCCCAAATTCCAATGATTACATGCCTTCGATTCTTTACATGACATTAAAATGATTCTGAAGTTGATGTGTATTGCACCGGTCAGCACAACTTCTTATAATTTTCTGAAATTTTTTCGAGAGGTAAAAAAAATCGAGACAGCTGATAAGATGCTCAGTTTCTCCGAATTGCGTTACTGATGACGATTATGCCTGATTCTAATCAGCAACTGCACCGTAAATACAGTGTTTCAATGAAATCAGTCGGCTCTAAAAACTAGAAAATCTCATTTAGGCCGTTTCGTTTGTTTTAAAATGATTCATTTAGGCTACTCAATGGTGCAAAACTACTGAATGATAACAGGTGATGGAAGARAATTGAGTAAACACCCATTGTGTTTTTTTCGTGTCATGAACTCAATCGTTTTCAGCACGTCATTATTCAGTTTTACGAGCGATGAGGTGTTCCGTTATCAGCCTGTGGAAATGACATTTTAACTGGGACCGTTTCGAGGAAAGAATCTATTCTAGTGGTGGAGGGGCATACTGTAGTTTCAGGAAACCGTAAGACTAGAAGTAAAGGTCTTGATGGGTAAACCTTAAGGAAAAACTTGCTTTGGAGAAGCCTGTAAAATGAGATCGAAGTTGAATGAAATTTGAAAACCAGCCTAGATATAGAATGAAAACCACATTTAAATATGATAATCTGTAAATCGAGTACAAAACTGTTTGGAAAAAATACATGATCTATCAAAATTACGGGGAAAAACAACCTTGAAACCTGTAATAGGAGGGAGGGCCCACTAATATTGAGCTAATTTATCTCGATTACTGTTAATGATATAAAATAGTTGTGAACTAATAAATTGTTTATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACGATTATGCCTGATTCTAA</pcr_primer_p1>
		<pcr_primer_p2>GTAAAACTGAATAATGACGTGCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACGATTATGCCTGATTCTAATCAGCAACTGCACCGTAAATACAGTGTTTCAATGAAATCAGTCGGCTCTAAAAACTAGAAAATCTCATTTAGGCCGTTTCGTTTGTTTTAAAATGATTCATTTAGGCTACTCAATGGTGCAAAACTACTGAATGATAACAGGTGATGGAAGAGAATTGAGTAAACACCCATTGTGTTTTTTTCGTGTCATGAACTCAATCGTTTTCAGCACGTCATTATTCAGTTTTAC</canonical_amplicon>
		<polymorphic_amplicon>GACGATTATGCCTGATTCTAATCAGCAACTGCACCGTAAATACAGTGTTTCAATGAAATCAGTCGGCTCTAAAAACTAGAAAATCTCATTTAGGCCGTTTCGTTTGTTTTAAAATGATTCATTTAGGCTACTCAATGGTGCAAAACTACTGAATGATAACAGGTGATGGAAGARAATTGAGTAAACACCCATTGTGTTTTTTTCGTGTCATGAACTCAATCGTTTTCAGCACGTCATTATTCAGTTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10666</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>327068</contig_pos>
        <strand>+</strand>
        <context>AGACTCTCAG[C/G]AAATGAGATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAATGTATTTTTGACCAAGATATTAGGATAAGAACCTCAAAGACTCTCAG</left_flank>
        <right_flank>AAATGAGATACGTGATAACACAAATCACACACTGACGATGACGAGAGATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTTTGAATTCCAAAAATTCAATCAAAAATTATCCAAATCTTCAATATGTCGCTGGCAGAATGAAGCACCAATAGTAAAAATTAAAGTTTAACCAAGTGAGAGGTGTGGGATTTTCCCGGGAAAAAATATCTGTATATCTGATTACAGATAGAAAAAAGGAGAAGCTTCTCTTCTCCTTTTTTAGTGCAAAAGCCCAGATGGTGCGTTCATTCTGACCGAGAGAAGAAGGGGGAAAGGGGCTGGAACCTGTAAGAAAAATATATAAAGATGGGAAAGTGACACAAAAATGAACGAAAAAACGGAATAGAAGACATACAAAAAAGTGGAATGACGTATGCAATTGTCAACAAAAAAGACGTTGTTGGTTTCTGTATGAGACAGAGAAAAGAACAGGAAAAGGAAATAATACATGGCCCATTTGGCCAATAAAATTTTAAAAACAGGTATAATGTATTTTTGACCAAGATATTAGGATAAGAACCTCAAAGACTCTCAGCAAATGAGATACGTGATAACACAAATCACACACTGACGATGACGAGAGATTACTGGGATGAAGTGAACTGGAAAATAACGAAAAACTCGGGTTTAAAACCGAAACGGATGATTTATGATTTCGTTGTTTACGGGACGTTGATTATCATATGCGAGAGAATAATTAAGGGTTTTCGTATACAAAATGCCATTATGGAGTTTCAGATTTTCTAGAAGATCCTTTGATCTTTATGAAGTGTAATTAGGCTAGCTTAAAATTCGATGATTTTTTGTTTGAATTCGAAGAAACTAATTCTCGGCCTACCCAATACATGCCCGTTGAGCTCAATTATCTCGGTTTCTAGGAGAGATATCAAACATTTGTCACTTGATAAAACATTGGTGATATTGTGAGATAAACATTTTGCCTGTTGACCACTTTTAGATATCTTTCACAGGAACAGAGATAAATTGGCTCAAAGTTGGCGGTTTGAGTGACCTTCTATCAAAGTGCTTACAGTAA</canonical>
            <polymorphic>TTGTTTTGAATTCCAAAAATTCAATCAAAAATTATCCAAATCTTCAATATGTCGCTGGCAGAATGAAGCACCAATAGTAAAAATTAAAGTTTAACCAAGTGAGAGGTGTGGGATTTTCCCGGGAAAAAATATCTGTATATCTGATTACAGATAGAAAAAAGGAGAAGCTTCTCTTCTCCTTTTTTAGTGCAAAAGCCCAGATGGTGCGTTCATTCTGACCGAGAGAAGAAGGGGGAAAGGGGCTGGAACCTGTAAGAAAAATATATAAAGATGGGAAAGTGACACAAAAATGAACGAAAAAACGGAATAGAAGACATACAAAAAAGTGGAATGACGTATGCAATTGTCAACAAAAAAGACGTTGTTGGTTTCTGTATGAGACAGAGAAAAGAACAGGAAAAGGAAATAATACATGGCCCATTTGGCCAATAAAATTTTAAAAACAGGTATAATGTATTTTTGACCAAGATATTAGGATAAGAACCTCAAAGACTCTCAGSAAATGAGATACGTGATAACACAAATCACACACTGACGATGACGAGAGATTACTGGGATGAAGTGAACTGGAAAATAACGAAAAACTCGGGTTTAAAACCGAAACGGATGATTTATGATTTCGTTGTTTACGGGACGTTGATTATCATATGCGAGAGAATAATTAAGGGTTTTCGTATACAAAATGCCATTATGGAGTTTCAGATTTTCTAGAAGATCCTTTGATCTTTATGAAGTGTAATTAGGCTAGCTTAAAATTCGATGATTTTTTGTTTGAATTCGAAGAAACTAATTCTCGGCCTACCCAATACATGCCCGTTGAGCTCAATTATCTCGGTTTCTAGGAGAGATATCAAACATTTGTCACTTGATAAAACATTGGTGATATTGTGAGATAAACATTTTGCCTGTTGACCACTTTTAGATATCTTTCACAGGAACAGAGATAAATTGGCTCAAAGTTGGCGGTTTGAGTGACCTTCTATCAAAGTGCTTACAGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAGAGAAAAGAACAGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAACAACGAAATCATAAATCATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GACAGAGAAAAGAACAGGAAAAGGAAATAATACATGGCCCATTTGGCCAATAAAATTTTAAAAACAGGTATAATGTATTTTTGACCAAGATATTAGGATAAGAACCTCAAAGACTCTCAGCAAATGAGATACGTGATAACACAAATCACACACTGACGATGACGAGAGATTACTGGGATGAAGTGAACTGGAAAATAACGAAAAACTCGGGTTTAAAACCGAAACGGATGATTTATGATTTCGTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>GACAGAGAAAAGAACAGGAAAAGGAAATAATACATGGCCCATTTGGCCAATAAAATTTTAAAAACAGGTATAATGTATTTTTGACCAAGATATTAGGATAAGAACCTCAAAGACTCTCAGSAAATGAGATACGTGATAACACAAATCACACACTGACGATGACGAGAGATTACTGGGATGAAGTGAACTGGAAAATAACGAAAAACTCGGGTTTAAAACCGAAACGGATGATTTATGATTTCGTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10667</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>389240</contig_pos>
        <strand>+</strand>
        <context>AATTCGAAAG[G/T]GCTTTTTACG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATCATGTATTTACCCATTTGGTAAGAAATTTTTTCTGGAAATTCGAAAG</left_flank>
        <right_flank>GCTTTTTACGTTCAAACGCATCTCATTTGCACACAAAATGAGCAAAAGCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGTGGAAATTTGTGACCATTTTCGTCCGTTTTCTTATGTATTTATTGCCCCCTGGCTAGTGTCTAGGTCCTATAATTTTAAGATCCGCTCGCTTAAACCGCCCATTTTCTACCCACCGTTTTTGTTTTTGTTTTTCTATATTGTTTGTTCTTTTGTGGGAGCTTTTTTACATTTTAGCTTCCTTATCAAACCTGAAACTTTTAGAATCATGATGGAATCCATGGATTTTCACAAAATAATGGCTTTCGTCTATCTTCCAACTATTCTGATAGGCCTTCTTGGAAACCTACTGTCCCTTTATGCTTACAGTCGTCCGAATAGAAAATCAATGGTAAGTTTCACAAAATTAATAATGTATGAAATCTTCGAGTTTTAGGTTGGTTTCTTGCTGTATTCCTTATCAATATCAGATATATTTCTTCTGGTCTTCGCTCTTCCCCTTTTCAGTATCATGTATTTACCCATTTGGTAAGAAATTTTTTCTGGAAATTCGAAAGTGCTTTTTACGTTCAAACGCATCTCATTTGCACACAAAATGAGCAAAAGCACGTTGAGGGGAATGTCTCGGATAGGATAGAAAGCTAAAAGTGGAAGGAGTTTTTTCAGAGGAAGTGGGTGGATTATGATGTGTTTAGTGATGATATACAAGAAGATTAGGTGGATGAGTTCAGAAGACATGAAGATTTTTTATAAAACAAGATTCTAATTAATTTGAGCCATTTTTCAGGACTGATGAGCAGAAAAGTTTTGTGGTCGCCTACACAGCCAAATACGTGTATCCGTTGTGCATGATGGCGAAAACATGCAGCCTATATATAATGGTGCTGATCACAATCGAACGGTGGATTGCAGTTTGTAGACCGCTCGAGGTACTCCTTTTTCTATTTTTAAGTTGATGTTAGAAATCTGAGATGGTTCAATCTCTGAAACTGAACAAAATAGGTGTCTGAAAATTAGAGAACAAAACAATATCCTGCGCAAATAATAACAACCGAAGA</canonical>
            <polymorphic>AATGTGGAAATTTGTGACCATTTTCGTCCGTTTTCTTATGTATTTATTGCCCCCTGGCTAGTGTCTAGGTCCTATAATTTTAAGATCCGCTCGCTTAAACCGCCCATTTTCTACCCACCGTTTTTGTTTTTGTTTTTCTATATTGTTTGTTCTTTTGTGGGAGCTTTTTTACATTTTAGCTTCCTTATCAAACCTGAAACTTTTAGAATCATGATGGAATCCATGGATTTTCACAAAATAATGGCTTTCGTCTATCTTCCAACTATTCTGATAGGCCTTCTTGGAAACCTACTGTCCCTTTATGCTTACAGTCGTCCGAATAGAAAATCAATGGTAAGTTTCACAAAATTAATAATGTATGAAATCTTCGAGTTTTAGGTTGGTTTCTTGCTGTATTCCTTATCAATATCAGATATATTTCTTCTGGTCTTCGCTCTTCCCCTTTTCAGTATCATGTATTTACCCATTTGGTAAGAAATTTTTTCTGGAAATTCGAAAGKGCTTTTTACGTTCAAACGCATCTCATTTGCACACAAAATGAGCAAAAGCACGTTGAGGGGAATGTCTCGGATAGGATAGAAAGCTAAAAGTGGAAGGAGTTTTTTCAGAGGAAGTGGGTGGATTATGATGTGTTTAGTGATGATATACAAGAAGATTAGGTGGATGAGTTCAGAAGACATGAAGATTTTTTATAAAACAAGATTCTAATTAATTTGAGCCATTTTTCAGGACTGATGAGCAGAAAAGTTTTGTGGTCGCCTACACAGCCAAATACGTGTATCCGTTGTGCATGATGGCGAAAACATGCAGCCTATATATAATGGTGCTGATCACAATCGAACGGTGGATTGCAGTTTGTAGACCGCTCGAGGTACTCCTTTTTCTATTTTTAAGTTGATGTTAGAAATCTGAGATGGTTCAATCTCTGAAACTGAACAAAATAGGTGTCTGAAAATTAGAGAACAAAACAATATCCTGCGCAAATAATAACAACCGAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>158 110 101 92 74 54 53 47 42 42 37 30 24 23 17 14 13 12 11 10 10 7 7 6 4 2</canonical_bands>
                <polymorphic_bands>188 110 101 92 74 54 53 47 42 42 37 24 23 17 14 13 12 11 10 10 7 7 6 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAAATCTTCGAGTTTTAGGTT</pcr_primer_p1>
		<pcr_primer_p2>AAAAACTCCTTCCACTTTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATGAAATCTTCGAGTTTTAGGTTGGTTTCTTGCTGTATTCCTTATCAATATCAGATATATTTCTTCTGGTCTTCGCTCTTCCCCTTTTCAGTATCATGTATTTACCCATTTGGTAAGAAATTTTTTCTGGAAATTCGAAAGTGCTTTTTACGTTCAAACGCATCTCATTTGCACACAAAATGAGCAAAAGCACGTTGAGGGGAATGTCTCGGATAGGATAGAAAGCTAAAAGTGGAAGGAGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATGAAATCTTCGAGTTTTAGGTTGGTTTCTTGCTGTATTCCTTATCAATATCAGATATATTTCTTCTGGTCTTCGCTCTTCCCCTTTTCAGTATCATGTATTTACCCATTTGGTAAGAAATTTTTTCTGGAAATTCGAAAGKGCTTTTTACGTTCAAACGCATCTCATTTGCACACAAAATGAGCAAAAGCACGTTGAGGGGAATGTCTCGGATAGGATAGAAAGCTAAAAGTGGAAGGAGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10668</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>389405</contig_pos>
        <strand>+</strand>
        <context>ATTAGGTGGA[G/T]GAGTTCAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGGGTGGATTATGATGTGTTTAGTGATGATATACAAGAAGATTAGGTGGA</left_flank>
        <right_flank>GAGTTCAGAAGACATGAAGATTTTTTATAAAACAAGATTCTAATTAATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTACATTTTAGCTTCCTTATCAAACCTGAAACTTTTAGAATCATGATGGAATCCATGGATTTTCACAAAATAATGGCTTTCGTCTATCTTCCAACTATTCTGATAGGCCTTCTTGGAAACCTACTGTCCCTTTATGCTTACAGTCGTCCGAATAGAAAATCAATGGTAAGTTTCACAAAATTAATAATGTATGAAATCTTCGAGTTTTAGGTTGGTTTCTTGCTGTATTCCTTATCAATATCAGATATATTTCTTCTGGTCTTCGCTCTTCCCCTTTTCAGTATCATGTATTTACCCATTTGGTAAGAAATTTTTTCTGGAAATTCGAAAGTGCTTTTTACGTTCAAACGCATCTCATTTGCACACAAAATGAGCAAAAGCACGTTGAGGGGAATGTCTCGGATAGGATAGAAAGCTAAAAGTGGAAGGAGTTTTTTCAGAGGAAGTGGGTGGATTATGATGTGTTTAGTGATGATATACAAGAAGATTAGGTGGATGAGTTCAGAAGACATGAAGATTTTTTATAAAACAAGATTCTAATTAATTTGAGCCATTTTTCAGGACTGATGAGCAGAAAAGTTTTGTGGTCGCCTACACAGCCAAATACGTGTATCCGTTGTGCATGATGGCGAAAACATGCAGCCTATATATAATGGTGCTGATCACAATCGAACGGTGGATTGCAGTTTGTAGACCGCTCGAGGTACTCCTTTTTCTATTTTTAAGTTGATGTTAGAAATCTGAGATGGTTCAATCTCTGAAACTGAACAAAATAGGTGTCTGAAAATTAGAGAACAAAACAATATCCTGCGCAAATAATAACAACCGAAGAATTTGAAACTGAAATTCTTAAAAATAGGGAATGCAATTTGATCCATCACTATCAACTAACTGTGTCAAACTCATTTTTCATAATTTCTAGGTTCAAATCTGGTGTCGATACACAACATCATCTTACTCCATAGCTGCGATCATCATCTTCGCAGTGGTCCTAAAC</canonical>
            <polymorphic>TTTTTACATTTTAGCTTCCTTATCAAACCTGAAACTTTTAGAATCATGATGGAATCCATGGATTTTCACAAAATAATGGCTTTCGTCTATCTTCCAACTATTCTGATAGGCCTTCTTGGAAACCTACTGTCCCTTTATGCTTACAGTCGTCCGAATAGAAAATCAATGGTAAGTTTCACAAAATTAATAATGTATGAAATCTTCGAGTTTTAGGTTGGTTTCTTGCTGTATTCCTTATCAATATCAGATATATTTCTTCTGGTCTTCGCTCTTCCCCTTTTCAGTATCATGTATTTACCCATTTGGTAAGAAATTTTTTCTGGAAATTCGAAAGTGCTTTTTACGTTCAAACGCATCTCATTTGCACACAAAATGAGCAAAAGCACGTTGAGGGGAATGTCTCGGATAGGATAGAAAGCTAAAAGTGGAAGGAGTTTTTTCAGAGGAAGTGGGTGGATTATGATGTGTTTAGTGATGATATACAAGAAGATTAGGTGGAKGAGTTCAGAAGACATGAAGATTTTTTATAAAACAAGATTCTAATTAATTTGAGCCATTTTTCAGGACTGATGAGCAGAAAAGTTTTGTGGTCGCCTACACAGCCAAATACGTGTATCCGTTGTGCATGATGGCGAAAACATGCAGCCTATATATAATGGTGCTGATCACAATCGAACGGTGGATTGCAGTTTGTAGACCGCTCGAGGTACTCCTTTTTCTATTTTTAAGTTGATGTTAGAAATCTGAGATGGTTCAATCTCTGAAACTGAACAAAATAGGTGTCTGAAAATTAGAGAACAAAACAATATCCTGCGCAAATAATAACAACCGAAGAATTTGAAACTGAAATTCTTAAAAATAGGGAATGCAATTTGATCCATCACTATCAACTAACTGTGTCAAACTCATTTTTCATAATTTCTAGGTTCAAATCTGGTGTCGATACACAACATCATCTTACTCCATAGCTGCGATCATCATCTTCGCAGTGGTCCTAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGGATAGAAAGCTAAAAGTGGA</pcr_primer_p1>
		<pcr_primer_p2>CCATTATATATAGGCTGCATGTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TAGGATAGAAAGCTAAAAGTGGAAGGAGTTTTTTCAGAGGAAGTGGGTGGATTATGATGTGTTTAGTGATGATATACAAGAAGATTAGGTGGATGAGTTCAGAAGACATGAAGATTTTTTATAAAACAAGATTCTAATTAATTTGAGCCATTTTTCAGGACTGATGAGCAGAAAAGTTTTGTGGTCGCCTACACAGCCAAATACGTGTATCCGTTGTGCATGATGGCGAAAACATGCAGCCTATATATAATGG</canonical_amplicon>
		<polymorphic_amplicon>TAGGATAGAAAGCTAAAAGTGGAAGGAGTTTTTTCAGAGGAAGTGGGTGGATTATGATGTGTTTAGTGATGATATACAAGAAGATTAGGTGGAKGAGTTCAGAAGACATGAAGATTTTTTATAAAACAAGATTCTAATTAATTTGAGCCATTTTTCAGGACTGATGAGCAGAAAAGTTTTGTGGTCGCCTACACAGCCAAATACGTGTATCCGTTGTGCATGATGGCGAAAACATGCAGCCTATATATAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10669</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>392969</contig_pos>
        <strand>+</strand>
        <context>AATTTAGCGA[A/T]TTTTTCATAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATAAGTTCAAACGACGCTAACTTCAGAAACGAAATTCCAAATTTAGCGA</left_flank>
        <right_flank>TTTTTCATAGAATCCTCTTCAAGTTTCCCTGAAAACGTGATTCTCTTCTC</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTACTGTAGTTTGGTTTCACTGAATCATATTTCAATTACCTCTAGGAAACTTTTTGAGACTTACCTTCATTATACCTCTTGAAACTCTCCTGAAATATTTTCGTTTTTGGTCAGAAAACGTTCTAGAACTATTCCTACAGATTTCGACTTACAAGTACTTGGTTTTCAAAAACTTCATTTTTAATTGAACCTTCTTTCGACATTTAGCGAAGTTCGAAATATAGAGAAAGTGAAAACTGACACTGTACTCTGATTTTCTCAGTTGCAGCCTTCAGTTTTCTTTTTTAGTTCAGACATTTTGTGATGTCTCCGGTAAGTAATATACCGTAAAACCTGTATTAGAAGGAGGGACCCTTATATTAGAGGGACCCTTCTGATACAGGTTTTACAAAACAAATAGTTCTTCTCTGAAATCGGCTGACTCATGTTAGAAGCTTAAGATATATACATATAAGTTCAAACGACGCTAACTTCAGAAACGAAATTCCAAATTTAGCGAATTTTTCATAGAATCCTCTTCAAGTTTCCCTGAAAACGTGATTCTCTTCTCACTATGTATTCTTTGCCATTTGTCGTCTCTCAAATGGAACGAAAAATCAAAAACTGAGGTCAAGAGAAAACTTTGAAAGTTGAATTTTTAAGTTGACTTTGAAAACCTTGCAACAAAAATAGGAATAAATCCTTTGAAAACAGGTAAGAACAGAAGTGAATGGGACAAACACAGCGTGTGGTCTTTTTCTTCTCCTGGCATTGTATATCACTCCCAAAAAGAAGCGAAAAATGAGAAAAAGAAAGGATAAGAGGGAGGAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACCAGAAAACAACGCATTCGAAGATTTATTCCCCTCGTTTGGTTCACTTTTATCCCGTTTTCATATCATAGTTCCAGTATTCATTTTTATGGTTTCAATTTATATTCGAAAACTTATCTGAAGATTGATAATTATGGGGCTGCACTTTAGGTAATTC</canonical>
            <polymorphic>CTACTGTAGTTTGGTTTCACTGAATCATATTTCAATTACCTCTAGGAAACTTTTTGAGACTTACCTTCATTATACCTCTTGAAACTCTCCTGAAATATTTTCGTTTTTGGTCAGAAAACGTTCTAGAACTATTCCTACAGATTTCGACTTACAAGTACTTGGTTTTCAAAAACTTCATTTTTAATTGAACCTTCTTTCGACATTTAGCGAAGTTCGAAATATAGAGAAAGTGAAAACTGACACTGTACTCTGATTTTCTCAGTTGCAGCCTTCAGTTTTCTTTTTTAGTTCAGACATTTTGTGATGTCTCCGGTAAGTAATATACCGTAAAACCTGTATTAGAAGGAGGGACCCTTATATTAGAGGGACCCTTCTGATACAGGTTTTACAAAACAAATAGTTCTTCTCTGAAATCGGCTGACTCATGTTAGAAGCTTAAGATATATACATATAAGTTCAAACGACGCTAACTTCAGAAACGAAATTCCAAATTTAGCGAWTTTTTCATAGAATCCTCTTCAAGTTTCCCTGAAAACGTGATTCTCTTCTCACTATGTATTCTTTGCCATTTGTCGTCTCTCAAATGGAACGAAAAATCAAAAACTGAGGTCAAGAGAAAACTTTGAAAGTTGAATTTTTAAGTTGACTTTGAAAACCTTGCAACAAAAATAGGAATAAATCCTTTGAAAACAGGTAAGAACAGAAGTGAATGGGACAAACACAGCGTGTGGTCTTTTTCTTCTCCTGGCATTGTATATCACTCCCAAAAAGAAGCGAAAAATGAGAAAAAGAAAGGATAAGAGGGAGGAAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACCAGAAAACAACGCATTCGAAGATTTATTCCCCTCGTTTGGTTCACTTTTATCCCGTTTTCATATCATAGTTCCAGTATTCATTTTTATGGTTTCAATTTATATTCGAAAACTTATCTGAAGATTGATAATTATGGGGCTGCACTTTAGGTAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>482 368 134 9 7</canonical_bands>
                <polymorphic_bands>482 368 143 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>307 300 149 134 33 33 23 9 7 5</canonical_bands>
                <polymorphic_bands>307 300 149 143 33 33 23 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATACAGGTTTTACAAAACAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGTTTTCTCTTGACCTCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGATACAGGTTTTACAAAACAAATAGTTCTTCTCTGAAATCGGCTGACTCATGTTAGAAGCTTAAGATATATACATATAAGTTCAAACGACGCTAACTTCAGAAACGAAATTCCAAATTTAGCGAATTTTTCATAGAATCCTCTTCAAGTTTCCCTGAAAACGTGATTCTCTTCTCACTATGTATTCTTTGCCATTTGTCGTCTCTCAAATGGAACGAAAAATCAAAAACTGAGGTCAAGAGAAAACTTT</canonical_amplicon>
		<polymorphic_amplicon>TGATACAGGTTTTACAAAACAAATAGTTCTTCTCTGAAATCGGCTGACTCATGTTAGAAGCTTAAGATATATACATATAAGTTCAAACGACGCTAACTTCAGAAACGAAATTCCAAATTTAGCGAWTTTTTCATAGAATCCTCTTCAAGTTTCCCTGAAAACGTGATTCTCTTCTCACTATGTATTCTTTGCCATTTGTCGTCTCTCAAATGGAACGAAAAATCAAAAACTGAGGTCAAGAGAAAACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10670</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>400982</contig_pos>
        <strand>+</strand>
        <context>TTGGGTCAAA[A/G]ACTAAGAGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAACTTCTTTTTTAGATTGGGATGAGACAGCACATGCAATTGGGTCAAA</left_flank>
        <right_flank>ACTAAGAGCTCGTTATGTTAACGGCCAACCTTATCAATTCCTTAACCGAC</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAAGTGTCAACTTTGACGCTATTTTAGCGGTTCAATCCGCTTTTTCTCGCCTCTTCAATTCCGCACTTTTGTTTGATTTTCGTTTCTTTTCTATTGGTTTTTTTGTTCATCTTTTGTTTCATAGAACAGTTTCGGACCAGTTTAATTTTTAGGGTTTTTGGGTTTTGAACGAAGATGAAGGTTTTATTCTACTCTGTTTCAACTCTATTACTACTTCAAGTGTCCAGTGGAGATGTTATGAATGGCACAATGAAATTGATGATGGTGCAGGCTGTAAGTCCATTTTTTAAAACCATGCCCAAAATGGAATTCCAGTTATGGAGACACGGAGATCGGACACCAACTGAAACCTATCATAACGATCAGTTCAAAGAACAGGATTGGGTGTTTGGAGGAGGTGGATGGGGTCAATTGACACCGGTAAACTTTGATACATTGAGATATTTCCCAACTTCTTTTTTAGATTGGGATGAGACAGCACATGCAATTGGGTCAAAAACTAAGAGCTCGTTATGTTAACGGCCAACCTTATCAATTCCTTAACCGACGTTACGATCAACAAGAAATTTTTGTTAGATCTACTGATAAAAATAGAACTCTACTTTCGGCTTACTCGAATATGGTTGGGATGTACGGAAGTAATAACGAGAATGTCTCACTCCCAGGTACTGAAGAAATACCATAAAACCTGTAATAAAAGGGCCACTACATTGTCAAGTTTGAGCTAATTCATCTCGGTTCTTGTTAAAGATACCAAAAAGTGGTCAACTAAAAAAATGTTCATCATAATATCAGCAACATTTATCGATTGACAAACTTTTGATATTTTTCAAAGGAACCGAGATAATTGAGATTAAAATACAAGTAAAGGGTGAGCAGTTGAAGGCTACCCATTTTTAAAACCGACCTAAATTGTAAAACTGTTACAGGATATGACTATCCGGACGTTCCTGGGTGGCCAGTAGGCTTTGTCCCAATTCCAATTCACACTATTCCTG</canonical>
            <polymorphic>GATAAGTGTCAACTTTGACGCTATTTTAGCGGTTCAATCCGCTTTTTCTCGCCTCTTCAATTCCGCACTTTTGTTTGATTTTCGTTTCTTTTCTATTGGTTTTTTTGTTCATCTTTTGTTTCATAGAACAGTTTCGGACCAGTTTAATTTTTAGGGTTTTTGGGTTTTGAACGAAGATGAAGGTTTTATTCTACTCTGTTTCAACTCTATTACTACTTCAAGTGTCCAGTGGAGATGTTATGAATGGCACAATGAAATTGATGATGGTGCAGGCTGTAAGTCCATTTTTTAAAACCATGCCCAAAATGGAATTCCAGTTATGGAGACACGGAGATCGGACACCAACTGAAACCTATCATAACGATCAGTTCAAAGAACAGGATTGGGTGTTTGGAGGAGGTGGATGGGGTCAATTGACACCGGTAAACTTTGATACATTGAGATATTTCCCAACTTCTTTTTTAGATTGGGATGAGACAGCACATGCAATTGGGTCAAARACTAAGAGCTCGTTATGTTAACGGCCAACCTTATCAATTCCTTAACCGACGTTACGATCAACAAGAAATTTTTGTTAGATCTACTGATAAAAATAGAACTCTACTTTCGGCTTACTCGAATATGGTTGGGATGTACGGAAGTAATAACGAGAATGTCTCACTCCCAGGTACTGAAGAAATACCATAAAACCTGTAATAAAAGGGCCACTACATTGTCAAGTTTGAGCTAATTCATCTCGGTTCTTGTTAAAGATACCAAAAAGTGGTCAACTAAAAAAATGTTCATCATAATATCAGCAACATTTATCGATTGACAAACTTTTGATATTTTTCAAAGGAACCGAGATAATTGAGATTAAAATACAAGTAAAGGGTGAGCAGTTGAAGGCTACCCATTTTTAAAACCGACCTAAATTGTAAAACTGTTACAGGATATGACTATCCGGACGTTCCTGGGTGGCCAGTAGGCTTTGTCCCAATTCCAATTCACACTATTCCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACCGGTAAACTTTGATACAT</pcr_primer_p1>
		<pcr_primer_p2>GGAGTGAGACATTCTCGTTATTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACACCGGTAAACTTTGATACATTGAGATATTTCCCAACTTCTTTTTTAGATTGGGATGAGACAGCACATGCAATTGGGTCAAAAACTAAGAGCTCGTTATGTTAACGGCCAACCTTATCAATTCCTTAACCGACGTTACGATCAACAAGAAATTTTTGTTAGATCTACTGATAAAAATAGAACTCTACTTTCGGCTTACTCGAATATGGTTGGGATGTACGGAAGTAATAACGAGAATGTCTCACTCC</canonical_amplicon>
		<polymorphic_amplicon>ACACCGGTAAACTTTGATACATTGAGATATTTCCCAACTTCTTTTTTAGATTGGGATGAGACAGCACATGCAATTGGGTCAAARACTAAGAGCTCGTTATGTTAACGGCCAACCTTATCAATTCCTTAACCGACGTTACGATCAACAAGAAATTTTTGTTAGATCTACTGATAAAAATAGAACTCTACTTTCGGCTTACTCGAATATGGTTGGGATGTACGGAAGTAATAACGAGAATGTCTCACTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10671</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>401030</contig_pos>
        <strand>+</strand>
        <context>TTCCTTAACC[A/G]ACGTTACGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAACTAAGAGCTCGTTATGTTAACGGCCAACCTTATCAATTCCTTAACC</left_flank>
        <right_flank>ACGTTACGATCAACAAGAAATTTTTGTTAGATCTACTGATAAAAATAGAA</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGCCTCTTCAATTCCGCACTTTTGTTTGATTTTCGTTTCTTTTCTATTGGTTTTTTTGTTCATCTTTTGTTTCATAGAACAGTTTCGGACCAGTTTAATTTTTAGGGTTTTTGGGTTTTGAACGAAGATGAAGGTTTTATTCTACTCTGTTTCAACTCTATTACTACTTCAAGTGTCCAGTGGAGATGTTATGAATGGCACAATGAAATTGATGATGGTGCAGGCTGTAAGTCCATTTTTTAAAACCATGCCCAAAATGGAATTCCAGTTATGGAGACACGGAGATCGGACACCAACTGAAACCTATCATAACGATCAGTTCAAAGAACAGGATTGGGTGTTTGGAGGAGGTGGATGGGGTCAATTGACACCGGTAAACTTTGATACATTGAGATATTTCCCAACTTCTTTTTTAGATTGGGATGAGACAGCACATGCAATTGGGTCAAAAACTAAGAGCTCGTTATGTTAACGGCCAACCTTATCAATTCCTTAACCGACGTTACGATCAACAAGAAATTTTTGTTAGATCTACTGATAAAAATAGAACTCTACTTTCGGCTTACTCGAATATGGTTGGGATGTACGGAAGTAATAACGAGAATGTCTCACTCCCAGGTACTGAAGAAATACCATAAAACCTGTAATAAAAGGGCCACTACATTGTCAAGTTTGAGCTAATTCATCTCGGTTCTTGTTAAAGATACCAAAAAGTGGTCAACTAAAAAAATGTTCATCATAATATCAGCAACATTTATCGATTGACAAACTTTTGATATTTTTCAAAGGAACCGAGATAATTGAGATTAAAATACAAGTAAAGGGTGAGCAGTTGAAGGCTACCCATTTTTAAAACCGACCTAAATTGTAAAACTGTTACAGGATATGACTATCCGGACGTTCCTGGGTGGCCAGTAGGCTTTGTCCCAATTCCAATTCACACTATTCCTGATGCCGAAGATCATGTGAGACTTTTTAAATTCATTTTTCGAACTCGTA</canonical>
            <polymorphic>TCGCCTCTTCAATTCCGCACTTTTGTTTGATTTTCGTTTCTTTTCTATTGGTTTTTTTGTTCATCTTTTGTTTCATAGAACAGTTTCGGACCAGTTTAATTTTTAGGGTTTTTGGGTTTTGAACGAAGATGAAGGTTTTATTCTACTCTGTTTCAACTCTATTACTACTTCAAGTGTCCAGTGGAGATGTTATGAATGGCACAATGAAATTGATGATGGTGCAGGCTGTAAGTCCATTTTTTAAAACCATGCCCAAAATGGAATTCCAGTTATGGAGACACGGAGATCGGACACCAACTGAAACCTATCATAACGATCAGTTCAAAGAACAGGATTGGGTGTTTGGAGGAGGTGGATGGGGTCAATTGACACCGGTAAACTTTGATACATTGAGATATTTCCCAACTTCTTTTTTAGATTGGGATGAGACAGCACATGCAATTGGGTCAAAAACTAAGAGCTCGTTATGTTAACGGCCAACCTTATCAATTCCTTAACCRACGTTACGATCAACAAGAAATTTTTGTTAGATCTACTGATAAAAATAGAACTCTACTTTCGGCTTACTCGAATATGGTTGGGATGTACGGAAGTAATAACGAGAATGTCTCACTCCCAGGTACTGAAGAAATACCATAAAACCTGTAATAAAAGGGCCACTACATTGTCAAGTTTGAGCTAATTCATCTCGGTTCTTGTTAAAGATACCAAAAAGTGGTCAACTAAAAAAATGTTCATCATAATATCAGCAACATTTATCGATTGACAAACTTTTGATATTTTTCAAAGGAACCGAGATAATTGAGATTAAAATACAAGTAAAGGGTGAGCAGTTGAAGGCTACCCATTTTTAAAACCGACCTAAATTGTAAAACTGTTACAGGATATGACTATCCGGACGTTCCTGGGTGGCCAGTAGGCTTTGTCCCAATTCCAATTCACACTATTCCTGATGCCGAAGATCATGTGAGACTTTTTAAATTCATTTTTCGAACTCGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACACCGGTAAACTTTGATACAT</pcr_primer_p1>
		<pcr_primer_p2>GGAGTGAGACATTCTCGTTATTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACACCGGTAAACTTTGATACATTGAGATATTTCCCAACTTCTTTTTTAGATTGGGATGAGACAGCACATGCAATTGGGTCAAAAACTAAGAGCTCGTTATGTTAACGGCCAACCTTATCAATTCCTTAACCGACGTTACGATCAACAAGAAATTTTTGTTAGATCTACTGATAAAAATAGAACTCTACTTTCGGCTTACTCGAATATGGTTGGGATGTACGGAAGTAATAACGAGAATGTCTCACTCC</canonical_amplicon>
		<polymorphic_amplicon>ACACCGGTAAACTTTGATACATTGAGATATTTCCCAACTTCTTTTTTAGATTGGGATGAGACAGCACATGCAATTGGGTCAAAAACTAAGAGCTCGTTATGTTAACGGCCAACCTTATCAATTCCTTAACCRACGTTACGATCAACAAGAAATTTTTGTTAGATCTACTGATAAAAATAGAACTCTACTTTCGGCTTACTCGAATATGGTTGGGATGTACGGAAGTAATAACGAGAATGTCTCACTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10672</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>401096</contig_pos>
        <strand>+</strand>
        <context>CTTTCGGCTT[A/T]CTCGAATATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAAATTTTTGTTAGATCTACTGATAAAAATAGAACTCTACTTTCGGCTT</left_flank>
        <right_flank>CTCGAATATGGTTGGGATGTACGGAAGTAATAACGAGAATGTCTCACTCC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGTTTCATAGAACAGTTTCGGACCAGTTTAATTTTTAGGGTTTTTGGGTTTTGAACGAAGATGAAGGTTTTATTCTACTCTGTTTCAACTCTATTACTACTTCAAGTGTCCAGTGGAGATGTTATGAATGGCACAATGAAATTGATGATGGTGCAGGCTGTAAGTCCATTTTTTAAAACCATGCCCAAAATGGAATTCCAGTTATGGAGACACGGAGATCGGACACCAACTGAAACCTATCATAACGATCAGTTCAAAGAACAGGATTGGGTGTTTGGAGGAGGTGGATGGGGTCAATTGACACCGGTAAACTTTGATACATTGAGATATTTCCCAACTTCTTTTTTAGATTGGGATGAGACAGCACATGCAATTGGGTCAAAAACTAAGAGCTCGTTATGTTAACGGCCAACCTTATCAATTCCTTAACCGACGTTACGATCAACAAGAAATTTTTGTTAGATCTACTGATAAAAATAGAACTCTACTTTCGGCTTACTCGAATATGGTTGGGATGTACGGAAGTAATAACGAGAATGTCTCACTCCCAGGTACTGAAGAAATACCATAAAACCTGTAATAAAAGGGCCACTACATTGTCAAGTTTGAGCTAATTCATCTCGGTTCTTGTTAAAGATACCAAAAAGTGGTCAACTAAAAAAATGTTCATCATAATATCAGCAACATTTATCGATTGACAAACTTTTGATATTTTTCAAAGGAACCGAGATAATTGAGATTAAAATACAAGTAAAGGGTGAGCAGTTGAAGGCTACCCATTTTTAAAACCGACCTAAATTGTAAAACTGTTACAGGATATGACTATCCGGACGTTCCTGGGTGGCCAGTAGGCTTTGTCCCAATTCCAATTCACACTATTCCTGATGCCGAAGATCATGTGAGACTTTTTAAATTCATTTTTCGAACTCGTAGAATTTCAATTGCAGCTCCTCTCCGTTGACAACGCTTGTGCCTTACAAGATACAATTTGGGAGATG</canonical>
            <polymorphic>TTTGTTTCATAGAACAGTTTCGGACCAGTTTAATTTTTAGGGTTTTTGGGTTTTGAACGAAGATGAAGGTTTTATTCTACTCTGTTTCAACTCTATTACTACTTCAAGTGTCCAGTGGAGATGTTATGAATGGCACAATGAAATTGATGATGGTGCAGGCTGTAAGTCCATTTTTTAAAACCATGCCCAAAATGGAATTCCAGTTATGGAGACACGGAGATCGGACACCAACTGAAACCTATCATAACGATCAGTTCAAAGAACAGGATTGGGTGTTTGGAGGAGGTGGATGGGGTCAATTGACACCGGTAAACTTTGATACATTGAGATATTTCCCAACTTCTTTTTTAGATTGGGATGAGACAGCACATGCAATTGGGTCAAAAACTAAGAGCTCGTTATGTTAACGGCCAACCTTATCAATTCCTTAACCGACGTTACGATCAACAAGAAATTTTTGTTAGATCTACTGATAAAAATAGAACTCTACTTTCGGCTTWCTCGAATATGGTTGGGATGTACGGAAGTAATAACGAGAATGTCTCACTCCCAGGTACTGAAGAAATACCATAAAACCTGTAATAAAAGGGCCACTACATTGTCAAGTTTGAGCTAATTCATCTCGGTTCTTGTTAAAGATACCAAAAAGTGGTCAACTAAAAAAATGTTCATCATAATATCAGCAACATTTATCGATTGACAAACTTTTGATATTTTTCAAAGGAACCGAGATAATTGAGATTAAAATACAAGTAAAGGGTGAGCAGTTGAAGGCTACCCATTTTTAAAACCGACCTAAATTGTAAAACTGTTACAGGATATGACTATCCGGACGTTCCTGGGTGGCCAGTAGGCTTTGTCCCAATTCCAATTCACACTATTCCTGATGCCGAAGATCATGTGAGACTTTTTAAATTCATTTTTCGAACTCGTAGAATTTCAATTGCAGCTCCTCTCCGTTGACAACGCTTGTGCCTTACAAGATACAATTTGGGAGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTAAACTTTGATACATTGAGA</pcr_primer_p1>
		<pcr_primer_p2>AGTACCTGGGAGTGAGACATT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGGTAAACTTTGATACATTGAGATATTTCCCAACTTCTTTTTTAGATTGGGATGAGACAGCACATGCAATTGGGTCAAAAACTAAGAGCTCGTTATGTTAACGGCCAACCTTATCAATTCCTTAACCGACGTTACGATCAACAAGAAATTTTTGTTAGATCTACTGATAAAAATAGAACTCTACTTTCGGCTTACTCGAATATGGTTGGGATGTACGGAAGTAATAACGAGAATGTCTCACTCCCAGGTACT</canonical_amplicon>
		<polymorphic_amplicon>CGGTAAACTTTGATACATTGAGATATTTCCCAACTTCTTTTTTAGATTGGGATGAGACAGCACATGCAATTGGGTCAAAAACTAAGAGCTCGTTATGTTAACGGCCAACCTTATCAATTCCTTAACCGACGTTACGATCAACAAGAAATTTTTGTTAGATCTACTGATAAAAATAGAACTCTACTTTCGGCTTWCTCGAATATGGTTGGGATGTACGGAAGTAATAACGAGAATGTCTCACTCCCAGGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10673</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>401439</contig_pos>
        <strand>+</strand>
        <context>ACGTTCCTGG[A/G]TGGCCAGTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACCTAAATTGTAAAACTGTTACAGGATATGACTATCCGGACGTTCCTGG</left_flank>
        <right_flank>TGGCCAGTAGGCTTTGTCCCAATTCCAATTCACACTATTCCTGATGCCGA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTAGATTGGGATGAGACAGCACATGCAATTGGGTCAAAAACTAAGAGCTCGTTATGTTAACGGCCAACCTTATCAATTCCTTAACCGACGTTACGATCAACAAGAAATTTTTGTTAGATCTACTGATAAAAATAGAACTCTACTTTCGGCTTACTCGAATATGGTTGGGATGTACGGAAGTAATAACGAGAATGTCTCACTCCCAGGTACTGAAGAAATACCATAAAACCTGTAATAAAAGGGCCACTACATTGTCAAGTTTGAGCTAATTCATCTCGGTTCTTGTTAAAGATACCAAAAAGTGGTCAACTAAAAAAATGTTCATCATAATATCAGCAACATTTATCGATTGACAAACTTTTGATATTTTTCAAAGGAACCGAGATAATTGAGATTAAAATACAAGTAAAGGGTGAGCAGTTGAAGGCTACCCATTTTTAAAACCGACCTAAATTGTAAAACTGTTACAGGATATGACTATCCGGACGTTCCTGGGTGGCCAGTAGGCTTTGTCCCAATTCCAATTCACACTATTCCTGATGCCGAAGATCATGTGAGACTTTTTAAATTCATTTTTCGAACTCGTAGAATTTCAATTGCAGCTCCTCTCCGTTGACAACGCTTGTGCCTTACAAGATACAATTTGGGAGATGGCAAAAACCACAGACATCGTCTCCAGTTACTTCAATCGTTCAGATGTTAAAGCTTTGATGGGAAATCTGACGAATTACTGTGGAGAAGATATCAATCCAGAGAACCTGTGGATCCTTTTTAACGCTCTGAAAATTGAAAAGCAGTACTATCCATTGAAATTCCAGCAGACGACTCCATGGTATTCTGACAGTTTGTTTGAACAGATAGATATTGTCAATTCGCAAGTTCAAGATTTCCAGAATGGATTGGGATTAGAAGGTGAAATCTGAGAAAGTTCTGAACTGAAATCGATTTTAGGTGTGATTAAAAATGGAATCGATATTGGAAAGTATCTTCGAAAGA</canonical>
            <polymorphic>TTTTTTAGATTGGGATGAGACAGCACATGCAATTGGGTCAAAAACTAAGAGCTCGTTATGTTAACGGCCAACCTTATCAATTCCTTAACCGACGTTACGATCAACAAGAAATTTTTGTTAGATCTACTGATAAAAATAGAACTCTACTTTCGGCTTACTCGAATATGGTTGGGATGTACGGAAGTAATAACGAGAATGTCTCACTCCCAGGTACTGAAGAAATACCATAAAACCTGTAATAAAAGGGCCACTACATTGTCAAGTTTGAGCTAATTCATCTCGGTTCTTGTTAAAGATACCAAAAAGTGGTCAACTAAAAAAATGTTCATCATAATATCAGCAACATTTATCGATTGACAAACTTTTGATATTTTTCAAAGGAACCGAGATAATTGAGATTAAAATACAAGTAAAGGGTGAGCAGTTGAAGGCTACCCATTTTTAAAACCGACCTAAATTGTAAAACTGTTACAGGATATGACTATCCGGACGTTCCTGGRTGGCCAGTAGGCTTTGTCCCAATTCCAATTCACACTATTCCTGATGCCGAAGATCATGTGAGACTTTTTAAATTCATTTTTCGAACTCGTAGAATTTCAATTGCAGCTCCTCTCCGTTGACAACGCTTGTGCCTTACAAGATACAATTTGGGAGATGGCAAAAACCACAGACATCGTCTCCAGTTACTTCAATCGTTCAGATGTTAAAGCTTTGATGGGAAATCTGACGAATTACTGTGGAGAAGATATCAATCCAGAGAACCTGTGGATCCTTTTTAACGCTCTGAAAATTGAAAAGCAGTACTATCCATTGAAATTCCAGCAGACGACTCCATGGTATTCTGACAGTTTGTTTGAACAGATAGATATTGTCAATTCGCAAGTTCAAGATTTCCAGAATGGATTGGGATTAGAAGGTGAAATCTGAGAAAGTTCTGAACTGAAATCGATTTTAGGTGTGATTAAAAATGGAATCGATATTGGAAAGTATCTTCGAAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>337 289 206 168</canonical_bands>
                <polymorphic_bands>626 206 168</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>178 152 111 83 72 71 58 47 40 39 36 30 28 26 25 2 2</canonical_bands>
                <polymorphic_bands>178 152 113 111 72 71 58 47 40 39 36 28 26 25 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAAAACCGACCTAAATTGTAA</pcr_primer_p1>
		<pcr_primer_p2>AGTAACTGGAGACGATGTCTGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTAAAACCGACCTAAATTGTAAAACTGTTACAGGATATGACTATCCGGACGTTCCTGGGTGGCCAGTAGGCTTTGTCCCAATTCCAATTCACACTATTCCTGATGCCGAAGATCATGTGAGACTTTTTAAATTCATTTTTCGAACTCGTAGAATTTCAATTGCAGCTCCTCTCCGTTGACAACGCTTGTGCCTTACAAGATACAATTTGGGAGATGGCAAAAACCACAGACATCGTCTCCAGTTACT</canonical_amplicon>
		<polymorphic_amplicon>TTTAAAACCGACCTAAATTGTAAAACTGTTACAGGATATGACTATCCGGACGTTCCTGGRTGGCCAGTAGGCTTTGTCCCAATTCCAATTCACACTATTCCTGATGCCGAAGATCATGTGAGACTTTTTAAATTCATTTTTCGAACTCGTAGAATTTCAATTGCAGCTCCTCTCCGTTGACAACGCTTGTGCCTTACAAGATACAATTTGGGAGATGGCAAAAACCACAGACATCGTCTCCAGTTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10674</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>401525</contig_pos>
        <strand>+</strand>
        <context>ATTTTTCGAA[A/C]TCKTAGAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATTCCTGATGCCGAAGATCATGTGAGACTTTTTAAATTCATTTTTCGAA</left_flank>
        <right_flank>TCGTAGAATTTCAATTGCAGCTCCTCTCCGTTGACAACGCTTGTGCCTTA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCGACGTTACGATCAACAAGAAATTTTTGTTAGATCTACTGATAAAAATAGAACTCTACTTTCGGCTTACTCGAATATGGTTGGGATGTACGGAAGTAATAACGAGAATGTCTCACTCCCAGGTACTGAAGAAATACCATAAAACCTGTAATAAAAGGGCCACTACATTGTCAAGTTTGAGCTAATTCATCTCGGTTCTTGTTAAAGATACCAAAAAGTGGTCAACTAAAAAAATGTTCATCATAATATCAGCAACATTTATCGATTGACAAACTTTTGATATTTTTCAAAGGAACCGAGATAATTGAGATTAAAATACAAGTAAAGGGTGAGCAGTTGAAGGCTACCCATTTTTAAAACCGACCTAAATTGTAAAACTGTTACAGGATATGACTATCCGGACGTTCCTGGGTGGCCAGTAGGCTTTGTCCCAATTCCAATTCACACTATTCCTGATGCCGAAGATCATGTGAGACTTTTTAAATTCATTTTTCGAACTCGTAGAATTTCAATTGCAGCTCCTCTCCGTTGACAACGCTTGTGCCTTACAAGATACAATTTGGGAGATGGCAAAAACCACAGACATCGTCTCCAGTTACTTCAATCGTTCAGATGTTAAAGCTTTGATGGGAAATCTGACGAATTACTGTGGAGAAGATATCAATCCAGAGAACCTGTGGATCCTTTTTAACGCTCTGAAAATTGAAAAGCAGTACTATCCATTGAAATTCCAGCAGACGACTCCATGGTATTCTGACAGTTTGTTTGAACAGATAGATATTGTCAATTCGCAAGTTCAAGATTTCCAGAATGGATTGGGATTAGAAGGTGAAATCTGAGAAAGTTCTGAACTGAAATCGATTTTAGGTGTGATTAAAAATGGAATCGATATTGGAAAGTATCTTCGAAAGATTCGTGGAGGGACCTTGGTCAATGATATTTACAATCATATGAATAGAAAAACGCAGTGTGCTTCGAACAACGGAAAAGAGTGTACA</canonical>
            <polymorphic>AACCGACGTTACGATCAACAAGAAATTTTTGTTAGATCTACTGATAAAAATAGAACTCTACTTTCGGCTTACTCGAATATGGTTGGGATGTACGGAAGTAATAACGAGAATGTCTCACTCCCAGGTACTGAAGAAATACCATAAAACCTGTAATAAAAGGGCCACTACATTGTCAAGTTTGAGCTAATTCATCTCGGTTCTTGTTAAAGATACCAAAAAGTGGTCAACTAAAAAAATGTTCATCATAATATCAGCAACATTTATCGATTGACAAACTTTTGATATTTTTCAAAGGAACCGAGATAATTGAGATTAAAATACAAGTAAAGGGTGAGCAGTTGAAGGCTACCCATTTTTAAAACCGACCTAAATTGTAAAACTGTTACAGGATATGACTATCCGGACGTTCCTGGGTGGCCAGTAGGCTTTGTCCCAATTCCAATTCACACTATTCCTGATGCCGAAGATCATGTGAGACTTTTTAAATTCATTTTTCGAAMTCGTAGAATTTCAATTGCAGCTCCTCTCCGTTGACAACGCTTGTGCCTTACAAGATACAATTTGGGAGATGGCAAAAACCACAGACATCGTCTCCAGTTACTTCAATCGTTCAGATGTTAAAGCTTTGATGGGAAATCTGACGAATTACTGTGGAGAAGATATCAATCCAGAGAACCTGTGGATCCTTTTTAACGCTCTGAAAATTGAAAAGCAGTACTATCCATTGAAATTCCAGCAGACGACTCCATGGTATTCTGACAGTTTGTTTGAACAGATAGATATTGTCAATTCGCAAGTTCAAGATTTCCAGAATGGATTGGGATTAGAAGGTGAAATCTGAGAAAGTTCTGAACTGAAATCGATTTTAGGTGTGATTAAAAATGGAATCGATATTGGAAAGTATCTTCGAAAGATTCGTGGAGGGACCTTGGTCAATGATATTTACAATCATATGAATAGAAAAACGCAGTGTGCTTCGAACAACGGAAAAGAGTGTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAAAACCGACCTAAATTGTAA</pcr_primer_p1>
		<pcr_primer_p2>AGTAACTGGAGACGATGTCTGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTAAAACCGACCTAAATTGTAAAACTGTTACAGGATATGACTATCCGGACGTTCCTGGGTGGCCAGTAGGCTTTGTCCCAATTCCAATTCACACTATTCCTGATGCCGAAGATCATGTGAGACTTTTTAAATTCATTTTTCGAACTCGTAGAATTTCAATTGCAGCTCCTCTCCGTTGACAACGCTTGTGCCTTACAAGATACAATTTGGGAGATGGCAAAAACCACAGACATCGTCTCCAGTTACT</canonical_amplicon>
		<polymorphic_amplicon>TTTAAAACCGACCTAAATTGTAAAACTGTTACAGGATATGACTATCCGGACGTTCCTGGGTGGCCAGTAGGCTTTGTCCCAATTCCAATTCACACTATTCCTGATGCCGAAGATCATGTGAGACTTTTTAAATTCATTTTTCGAAMTCGTAGAATTTCAATTGCAGCTCCTCTCCGTTGACAACGCTTGTGCCTTACAAGATACAATTTGGGAGATGGCAAAAACCACAGACATCGTCTCCAGTTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10675</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>401528</contig_pos>
        <strand>+</strand>
        <context>TTTCGAAMTC[G/T]TAGAATTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCCTGATGCCGAAGATCATGTGAGACTTTTTAAATTCATTTTTCGAACTC</left_flank>
        <right_flank>TAGAATTTCAATTGCAGCTCCTCTCCGTTGACAACGCTTGTGCCTTACAA</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACGTTACGATCAACAAGAAATTTTTGTTAGATCTACTGATAAAAATAGAACTCTACTTTCGGCTTACTCGAATATGGTTGGGATGTACGGAAGTAATAACGAGAATGTCTCACTCCCAGGTACTGAAGAAATACCATAAAACCTGTAATAAAAGGGCCACTACATTGTCAAGTTTGAGCTAATTCATCTCGGTTCTTGTTAAAGATACCAAAAAGTGGTCAACTAAAAAAATGTTCATCATAATATCAGCAACATTTATCGATTGACAAACTTTTGATATTTTTCAAAGGAACCGAGATAATTGAGATTAAAATACAAGTAAAGGGTGAGCAGTTGAAGGCTACCCATTTTTAAAACCGACCTAAATTGTAAAACTGTTACAGGATATGACTATCCGGACGTTCCTGGGTGGCCAGTAGGCTTTGTCCCAATTCCAATTCACACTATTCCTGATGCCGAAGATCATGTGAGACTTTTTAAATTCATTTTTCGAACTCGTAGAATTTCAATTGCAGCTCCTCTCCGTTGACAACGCTTGTGCCTTACAAGATACAATTTGGGAGATGGCAAAAACCACAGACATCGTCTCCAGTTACTTCAATCGTTCAGATGTTAAAGCTTTGATGGGAAATCTGACGAATTACTGTGGAGAAGATATCAATCCAGAGAACCTGTGGATCCTTTTTAACGCTCTGAAAATTGAAAAGCAGTACTATCCATTGAAATTCCAGCAGACGACTCCATGGTATTCTGACAGTTTGTTTGAACAGATAGATATTGTCAATTCGCAAGTTCAAGATTTCCAGAATGGATTGGGATTAGAAGGTGAAATCTGAGAAAGTTCTGAACTGAAATCGATTTTAGGTGTGATTAAAAATGGAATCGATATTGGAAAGTATCTTCGAAAGATTCGTGGAGGGACCTTGGTCAATGATATTTACAATCATATGAATAGAAAAACGCAGTGTGCTTCGAACAACGGAAAAGAGTGTACATAC</canonical>
            <polymorphic>CGACGTTACGATCAACAAGAAATTTTTGTTAGATCTACTGATAAAAATAGAACTCTACTTTCGGCTTACTCGAATATGGTTGGGATGTACGGAAGTAATAACGAGAATGTCTCACTCCCAGGTACTGAAGAAATACCATAAAACCTGTAATAAAAGGGCCACTACATTGTCAAGTTTGAGCTAATTCATCTCGGTTCTTGTTAAAGATACCAAAAAGTGGTCAACTAAAAAAATGTTCATCATAATATCAGCAACATTTATCGATTGACAAACTTTTGATATTTTTCAAAGGAACCGAGATAATTGAGATTAAAATACAAGTAAAGGGTGAGCAGTTGAAGGCTACCCATTTTTAAAACCGACCTAAATTGTAAAACTGTTACAGGATATGACTATCCGGACGTTCCTGGGTGGCCAGTAGGCTTTGTCCCAATTCCAATTCACACTATTCCTGATGCCGAAGATCATGTGAGACTTTTTAAATTCATTTTTCGAACTCKTAGAATTTCAATTGCAGCTCCTCTCCGTTGACAACGCTTGTGCCTTACAAGATACAATTTGGGAGATGGCAAAAACCACAGACATCGTCTCCAGTTACTTCAATCGTTCAGATGTTAAAGCTTTGATGGGAAATCTGACGAATTACTGTGGAGAAGATATCAATCCAGAGAACCTGTGGATCCTTTTTAACGCTCTGAAAATTGAAAAGCAGTACTATCCATTGAAATTCCAGCAGACGACTCCATGGTATTCTGACAGTTTGTTTGAACAGATAGATATTGTCAATTCGCAAGTTCAAGATTTCCAGAATGGATTGGGATTAGAAGGTGAAATCTGAGAAAGTTCTGAACTGAAATCGATTTTAGGTGTGATTAAAAATGGAATCGATATTGGAAAGTATCTTCGAAAGATTCGTGGAGGGACCTTGGTCAATGATATTTACAATCATATGAATAGAAAAACGCAGTGTGCTTCGAACAACGGAAAAGAGTGTACATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAAAACCGACCTAAATTGTAA</pcr_primer_p1>
		<pcr_primer_p2>AGTAACTGGAGACGATGTCTGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTAAAACCGACCTAAATTGTAAAACTGTTACAGGATATGACTATCCGGACGTTCCTGGGTGGCCAGTAGGCTTTGTCCCAATTCCAATTCACACTATTCCTGATGCCGAAGATCATGTGAGACTTTTTAAATTCATTTTTCGAACTCGTAGAATTTCAATTGCAGCTCCTCTCCGTTGACAACGCTTGTGCCTTACAAGATACAATTTGGGAGATGGCAAAAACCACAGACATCGTCTCCAGTTACT</canonical_amplicon>
		<polymorphic_amplicon>TTTAAAACCGACCTAAATTGTAAAACTGTTACAGGATATGACTATCCGGACGTTCCTGGGTGGCCAGTAGGCTTTGTCCCAATTCCAATTCACACTATTCCTGATGCCGAAGATCATGTGAGACTTTTTAAATTCATTTTTCGAACTCKTAGAATTTCAATTGCAGCTCCTCTCCGTTGACAACGCTTGTGCCTTACAAGATACAATTTGGGAGATGGCAAAAACCACAGACATCGTCTCCAGTTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10676</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>403203</contig_pos>
        <strand>+</strand>
        <context>AYTAGATGGG[C/T]CATTTTCGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAATTGAGTCCGGTGAGCGGTTTATAAAGGTGTTCTAAAACTAGATGGG</left_flank>
        <right_flank>CATTTTCGAAAAAAAAATGCTCAAAATTATGAAACATTTCAGAGAATCCC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTTTTTATTTCCTCCCTGCTCCGAACTTCTCTCTATTTTCTGAAAACTCGAAATCACAAAACTCCCTTTTTTCAGGGTAAATTTCACTATGGTTTCTGCCATTTCAATTATCGGGCTCTTTGCTCTCACGGGTTTTTCTACTTCTTATACAAATGGTACTAAGGAATTGGTTTTTGTTCAAACGGTAATAAACATTCGAAAAAATGATTCAATGAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGTTCCCAACTGATCCATATCAAGAGAGCGCATGGACATTTGGAGGTGGTGGATGGGGACAATTGAGTCCGGTGAGCGGTTTATAAAGGTGTTCTAAAACTAGATGGGTCATTTTCGAAAAAAAAATGCTCAAAATTATGAAACATTTCAGAGAATCCCATAAAAATGTATATTATTCACTATTGAAAACCTTCAGACCGGAATGAAACAGCACTTGAATTTGGGAAAAATGCTCCGAAGCCGCTATGTGACAGATTACCAATTCTTCCCCACTAAATACAACGCGAAGCAGGTAACAATTATTTAGCTCCAGTTATTTCAAAAGTTTTCGAATTTAAGATTTATGTCCGATCCACTGACGTCAACAGAACCATCATCTCTGCTATGTCCAATTTGCTCGGGCAATACGGGCAAGACGACGGAAGCAGTGTTGCAGACGTCGACTATCCAGCAGTTGTAGGATGGCCAAAAGGATTCGTGCCGATTGCAGTGCATACTGTAGATGATGACACTGATCATGTGAGTAGGTCTACCGTAATCCTATTAAATGACGAAGCTAGGGCAGAAATAGGAAAAAAGAGGCAACGTTTTAAGACGATTAAAGATTGG</canonical>
            <polymorphic>TTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTTTTTATTTCCTCCCTGCTCCGAACTTCTCTCTATTTTCTGAAAACTCGAAATCACAAAACTCCCTTTTTTCAGGGTAAATTTCACTATGGTTTCTGCCATTTCAATTATCGGGCTCTTTGCTCTCACGGGTTTTTCTACTTCTTATACAAATGGTACTAAGGAATTGGTTTTTGTTCAAACGGTAATAAACATTCGAAAAAATGATTCAATGAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGTTCCCAACTGATCCATATCAAGAGAGCGCATGGACATTTGGAGGTGGTGGATGGGGACAATTGAGTCCGGTGAGCGGTTTATAAAGGTGTTCTAAAACTAGATGGGYCATTTTCGAAAAAAAAATGCTCAAAATTATGAAACATTTCAGAGAATCCCATAAAAATGTATATTATTCACTATTGAAAACCTTCAGACCGGAATGAAACAGCACTTGAATTTGGGAAAAATGCTCCGAAGCCGCTATGTGACAGATTACCAATTCTTCCCCACTAAATACAACGCGAAGCAGGTAACAATTATTTAGCTCCAGTTATTTCAAAAGTTTTCGAATTTAAGATTTATGTCCGATCCACTGACGTCAACAGAACCATCATCTCTGCTATGTCCAATTTGCTCGGGCAATACGGGCAAGACGACGGAAGCAGTGTTGCAGACGTCGACTATCCAGCAGTTGTAGGATGGCCAAAAGGATTCGTGCCGATTGCAGTGCATACTGTAGATGATGACACTGATCATGTGAGTAGGTCTACCGTAATCCTATTAAATGACGAAGCTAGGGCAGAAATAGGAAAAAAGAGGCAACGTTTTAAGACGATTAAAGATTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACGGTAATAAACATTCGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TACATTTTTATGGGATTCTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACGGTAATAAACATTCGAAAAAATGATTCAATGAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGTTCCCAACTGATCCATATCAAGAGAGCGCATGGACATTTGGAGGTGGTGGATGGGGACAATTGAGTCCGGTGAGCGGTTTATAAAGGTGTTCTAAAACTAGATGGGTCATTTTCGAAAAAAAAATGCTCAAAATTATGAAACATTTCAGAGAATCCCATAAAAATGTA</canonical_amplicon>
		<polymorphic_amplicon>AACGGTAATAAACATTCGAAAAAATGATTCAATGAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGTTCCCAACTGATCCATATCAAGAGAGCGCATGGACATTTGGAGGTGGTGGATGGGGACAATTGAGTCCGGTGAGCGGTTTATAAAGGTGTTCTAAAACTAGATGGGYCATTTTCGAAAAAAAAATGCTCAAAATTATGAAACATTTCAGAGAATCCCATAAAAATGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10677</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>403194</contig_pos>
        <strand>+</strand>
        <context>TGTTCTAAAA[C/T]TAGATGGGYC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGATGGGGACAATTGAGTCCGGTGAGCGGTTTATAAAGGTGTTCTAAAA</left_flank>
        <right_flank>TAGATGGGTCATTTTCGAAAAAAAAATGCTCAAAATTATGAAACATTTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTTTTTATTTCCTCCCTGCTCCGAACTTCTCTCTATTTTCTGAAAACTCGAAATCACAAAACTCCCTTTTTTCAGGGTAAATTTCACTATGGTTTCTGCCATTTCAATTATCGGGCTCTTTGCTCTCACGGGTTTTTCTACTTCTTATACAAATGGTACTAAGGAATTGGTTTTTGTTCAAACGGTAATAAACATTCGAAAAAATGATTCAATGAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGTTCCCAACTGATCCATATCAAGAGAGCGCATGGACATTTGGAGGTGGTGGATGGGGACAATTGAGTCCGGTGAGCGGTTTATAAAGGTGTTCTAAAACTAGATGGGTCATTTTCGAAAAAAAAATGCTCAAAATTATGAAACATTTCAGAGAATCCCATAAAAATGTATATTATTCACTATTGAAAACCTTCAGACCGGAATGAAACAGCACTTGAATTTGGGAAAAATGCTCCGAAGCCGCTATGTGACAGATTACCAATTCTTCCCCACTAAATACAACGCGAAGCAGGTAACAATTATTTAGCTCCAGTTATTTCAAAAGTTTTCGAATTTAAGATTTATGTCCGATCCACTGACGTCAACAGAACCATCATCTCTGCTATGTCCAATTTGCTCGGGCAATACGGGCAAGACGACGGAAGCAGTGTTGCAGACGTCGACTATCCAGCAGTTGTAGGATGGCCAAAAGGATTCGTGCCGATTGCAGTGCATACTGTAGATGATGACACTGATCATGTGAGTAGGTCTACCGTAATCCTATTAAATGACGAAGCTAGGGCAGAAATAGGAAAAAAGAGGCAACGTTTTAAGACGATT</canonical>
            <polymorphic>ACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTTTTTATTTCCTCCCTGCTCCGAACTTCTCTCTATTTTCTGAAAACTCGAAATCACAAAACTCCCTTTTTTCAGGGTAAATTTCACTATGGTTTCTGCCATTTCAATTATCGGGCTCTTTGCTCTCACGGGTTTTTCTACTTCTTATACAAATGGTACTAAGGAATTGGTTTTTGTTCAAACGGTAATAAACATTCGAAAAAATGATTCAATGAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGTTCCCAACTGATCCATATCAAGAGAGCGCATGGACATTTGGAGGTGGTGGATGGGGACAATTGAGTCCGGTGAGCGGTTTATAAAGGTGTTCTAAAAYTAGATGGGTCATTTTCGAAAAAAAAATGCTCAAAATTATGAAACATTTCAGAGAATCCCATAAAAATGTATATTATTCACTATTGAAAACCTTCAGACCGGAATGAAACAGCACTTGAATTTGGGAAAAATGCTCCGAAGCCGCTATGTGACAGATTACCAATTCTTCCCCACTAAATACAACGCGAAGCAGGTAACAATTATTTAGCTCCAGTTATTTCAAAAGTTTTCGAATTTAAGATTTATGTCCGATCCACTGACGTCAACAGAACCATCATCTCTGCTATGTCCAATTTGCTCGGGCAATACGGGCAAGACGACGGAAGCAGTGTTGCAGACGTCGACTATCCAGCAGTTGTAGGATGGCCAAAAGGATTCGTGCCGATTGCAGTGCATACTGTAGATGATGACACTGATCATGTGAGTAGGTCTACCGTAATCCTATTAAATGACGAAGCTAGGGCAGAAATAGGAAAAAAGAGGCAACGTTTTAAGACGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 457 43</canonical_bands>
                <polymorphic_bands>957 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACGGTAATAAACATTCGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TACATTTTTATGGGATTCTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACGGTAATAAACATTCGAAAAAATGATTCAATGAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGTTCCCAACTGATCCATATCAAGAGAGCGCATGGACATTTGGAGGTGGTGGATGGGGACAATTGAGTCCGGTGAGCGGTTTATAAAGGTGTTCTAAAACTAGATGGGTCATTTTCGAAAAAAAAATGCTCAAAATTATGAAACATTTCAGAGAATCCCATAAAAATGTA</canonical_amplicon>
		<polymorphic_amplicon>AACGGTAATAAACATTCGAAAAAATGATTCAATGAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGTTCCCAACTGATCCATATCAAGAGAGCGCATGGACATTTGGAGGTGGTGGATGGGGACAATTGAGTCCGGTGAGCGGTTTATAAAGGTGTTCTAAAAYTAGATGGGTCATTTTCGAAAAAAAAATGCTCAAAATTATGAAACATTTCAGAGAATCCCATAAAAATGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10678</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>403047</contig_pos>
        <strand>+</strand>
        <context>AATGATTCAA[C/T]GAATGAATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAATTGGTTTTTGTTCAAACGGTAATAAACATTCGAAAAAATGATTCAA</left_flank>
        <right_flank>GAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTTCTGCCATGGCTTCTCCGTTCTCATCTCTTCTGATTCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTTTTTATTTCCTCCCTGCTCCGAACTTCTCTCTATTTTCTGAAAACTCGAAATCACAAAACTCCCTTTTTTCAGGGTAAATTTCACTATGGTTTCTGCCATTTCAATTATCGGGCTCTTTGCTCTCACGGGTTTTTCTACTTCTTATACAAATGGTACTAAGGAATTGGTTTTTGTTCAAACGGTAATAAACATTCGAAAAAATGATTCAATGAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGTTCCCAACTGATCCATATCAAGAGAGCGCATGGACATTTGGAGGTGGTGGATGGGGACAATTGAGTCCGGTGAGCGGTTTATAAAGGTGTTCTAAAACTAGATGGGTCATTTTCGAAAAAAAAATGCTCAAAATTATGAAACATTTCAGAGAATCCCATAAAAATGTATATTATTCACTATTGAAAACCTTCAGACCGGAATGAAACAGCACTTGAATTTGGGAAAAATGCTCCGAAGCCGCTATGTGACAGATTACCAATTCTTCCCCACTAAATACAACGCGAAGCAGGTAACAATTATTTAGCTCCAGTTATTTCAAAAGTTTTCGAATTTAAGATTTATGTCCGATCCACTGACGTCAACAGAACCATCATCTCTGCTATGTCCAATTTGCTCGGGCAATACGGGCAAGACGACGGAAGCAGTGTTGCAGACGTCGACTATCCAGCA</canonical>
            <polymorphic>ATCTTCTGCCATGGCTTCTCCGTTCTCATCTCTTCTGATTCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTTTTTATTTCCTCCCTGCTCCGAACTTCTCTCTATTTTCTGAAAACTCGAAATCACAAAACTCCCTTTTTTCAGGGTAAATTTCACTATGGTTTCTGCCATTTCAATTATCGGGCTCTTTGCTCTCACGGGTTTTTCTACTTCTTATACAAATGGTACTAAGGAATTGGTTTTTGTTCAAACGGTAATAAACATTCGAAAAAATGATTCAAYGAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGTTCCCAACTGATCCATATCAAGAGAGCGCATGGACATTTGGAGGTGGTGGATGGGGACAATTGAGTCCGGTGAGCGGTTTATAAAGGTGTTCTAAAACTAGATGGGTCATTTTCGAAAAAAAAATGCTCAAAATTATGAAACATTTCAGAGAATCCCATAAAAATGTATATTATTCACTATTGAAAACCTTCAGACCGGAATGAAACAGCACTTGAATTTGGGAAAAATGCTCCGAAGCCGCTATGTGACAGATTACCAATTCTTCCCCACTAAATACAACGCGAAGCAGGTAACAATTATTTAGCTCCAGTTATTTCAAAAGTTTTCGAATTTAAGATTTATGTCCGATCCACTGACGTCAACAGAACCATCATCTCTGCTATGTCCAATTTGCTCGGGCAATACGGGCAAGACGACGGAAGCAGTGTTGCAGACGTCGACTATCCAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTACTAAGGAATTGGTTTTTGT</pcr_primer_p1>
		<pcr_primer_p2>GTTTCATAATTTTGAGCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTACTAAGGAATTGGTTTTTGTTCAAACGGTAATAAACATTCGAAAAAATGATTCAATGAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGTTCCCAACTGATCCATATCAAGAGAGCGCATGGACATTTGGAGGTGGTGGATGGGGACAATTGAGTCCGGTGAGCGGTTTATAAAGGTGTTCTAAAACTAGATGGGTCATTTTCGAAAAAAAAATGCTCAAAATTATGAAAC</canonical_amplicon>
		<polymorphic_amplicon>GGTACTAAGGAATTGGTTTTTGTTCAAACGGTAATAAACATTCGAAAAAATGATTCAAYGAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGTTCCCAACTGATCCATATCAAGAGAGCGCATGGACATTTGGAGGTGGTGGATGGGGACAATTGAGTCCGGTGAGCGGTTTATAAAGGTGTTCTAAAACTAGATGGGTCATTTTCGAAAAAAAAATGCTCAAAATTATGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10679</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>402788</contig_pos>
        <strand>+</strand>
        <context>TGAAGTGGCA[A/G]AGAATGGTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCA</left_flank>
        <right_flank>AGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGTTCTCTCCTTGGTTTTTAGAAATCTTATTTATCAATTTCAGATGATCTACCATCGTCACGAAAACGATACTTTGAATAATGTGATTACTTCTGGAATCCCTGGATGCAATGGAAATGATTATTGTCCACTGTCAGTTCTCAAGAACTATTCCGACGTCTATAAACCAGAAATGGAAATGAATCAGGTAAATTCAGAAGGTTCTAAAAAATTATGTGATGATAAAACTTTCAGTGGTGCAACTATAACATGTTTGGATCTTCTGCCATGGCTTCTCCGTTCTCATCTCTTCTGATTCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTTTTTATTTCCTCCCTGCTCCGAACTTCTCTCTATTTTCTGAAAACTCGAAATCACAAAACTCCCTTTTTTCAGGGTAAATTTCACTATGGTTTCTGCCATTTCAATTATCGGGCTCTTTGCTCTCACGGGTTTTTCTACTTCTTATACAAATGGTACTAAGGAATTGGTTTTTGTTCAAACGGTAATAAACATTCGAAAAAATGATTCAATGAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGTTCCCAACTGATCCATATCAAGAGAGCGCATGGACATTTGGAGGTGGTGGATGGGGACAATTGAGTCCGGTGAGCGGTTTATAAAGGTGTTCTAAAACTAGATGGGTCATTTTCGAAAAAAAAATGCTCAAAATTATGAAACATTTCAGAGAATCCCATAAAAATGTATATTATTCACTATTGAAAACCTTC</canonical>
            <polymorphic>TGGGTTCTCTCCTTGGTTTTTAGAAATCTTATTTATCAATTTCAGATGATCTACCATCGTCACGAAAACGATACTTTGAATAATGTGATTACTTCTGGAATCCCTGGATGCAATGGAAATGATTATTGTCCACTGTCAGTTCTCAAGAACTATTCCGACGTCTATAAACCAGAAATGGAAATGAATCAGGTAAATTCAGAAGGTTCTAAAAAATTATGTGATGATAAAACTTTCAGTGGTGCAACTATAACATGTTTGGATCTTCTGCCATGGCTTCTCCGTTCTCATCTCTTCTGATTCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCARAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTTTTTATTTCCTCCCTGCTCCGAACTTCTCTCTATTTTCTGAAAACTCGAAATCACAAAACTCCCTTTTTTCAGGGTAAATTTCACTATGGTTTCTGCCATTTCAATTATCGGGCTCTTTGCTCTCACGGGTTTTTCTACTTCTTATACAAATGGTACTAAGGAATTGGTTTTTGTTCAAACGGTAATAAACATTCGAAAAAATGATTCAATGAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGTTCCCAACTGATCCATATCAAGAGAGCGCATGGACATTTGGAGGTGGTGGATGGGGACAATTGAGTCCGGTGAGCGGTTTATAAAGGTGTTCTAAAACTAGATGGGTCATTTTCGAAAAAAAAATGCTCAAAATTATGAAACATTTCAGAGAATCCCATAAAAATGTATATTATTCACTATTGAAAACCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGATGATAAAACAGCATTGAT</pcr_primer_p1>
		<pcr_primer_p2>AAGTAGAAAAACCCGTGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTTTTTATTTCCTCCCTGCTCCGAACTTCTCTCTATTTTCTGAAAACTCGAAATCACAAAACTCCCTTTTTTCAGGGTAAATTTCACTATGGTTTCTGCCATTTCAATTATCGGGCTCTTTGCTCTCACGGGTTTTTCTACTT</canonical_amplicon>
		<polymorphic_amplicon>ATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCARAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTTTTTATTTCCTCCCTGCTCCGAACTTCTCTCTATTTTCTGAAAACTCGAAATCACAAAACTCCCTTTTTTCAGGGTAAATTTCACTATGGTTTCTGCCATTTCAATTATCGGGCTCTTTGCTCTCACGGGTTTTTCTACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10680</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>402755</contig_pos>
        <strand>+</strand>
        <context>ATTGATCACA[C/T]TATCGAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACA</left_flank>
        <right_flank>TATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGATTTACAAACAAATCAGACTTATTTCAAGGTGGGTTCTCTCCTTGGTTTTTAGAAATCTTATTTATCAATTTCAGATGATCTACCATCGTCACGAAAACGATACTTTGAATAATGTGATTACTTCTGGAATCCCTGGATGCAATGGAAATGATTATTGTCCACTGTCAGTTCTCAAGAACTATTCCGACGTCTATAAACCAGAAATGGAAATGAATCAGGTAAATTCAGAAGGTTCTAAAAAATTATGTGATGATAAAACTTTCAGTGGTGCAACTATAACATGTTTGGATCTTCTGCCATGGCTTCTCCGTTCTCATCTCTTCTGATTCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTTTTTATTTCCTCCCTGCTCCGAACTTCTCTCTATTTTCTGAAAACTCGAAATCACAAAACTCCCTTTTTTCAGGGTAAATTTCACTATGGTTTCTGCCATTTCAATTATCGGGCTCTTTGCTCTCACGGGTTTTTCTACTTCTTATACAAATGGTACTAAGGAATTGGTTTTTGTTCAAACGGTAATAAACATTCGAAAAAATGATTCAATGAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGTTCCCAACTGATCCATATCAAGAGAGCGCATGGACATTTGGAGGTGGTGGATGGGGACAATTGAGTCCGGTGAGCGGTTTATAAAGGTGTTCTAAAACTAGATGGGTCATTTTCGAAAAAAAAATGCTCAAAATTATGAAACATTTCAGAGAATCCCAT</canonical>
            <polymorphic>AAGATTTACAAACAAATCAGACTTATTTCAAGGTGGGTTCTCTCCTTGGTTTTTAGAAATCTTATTTATCAATTTCAGATGATCTACCATCGTCACGAAAACGATACTTTGAATAATGTGATTACTTCTGGAATCCCTGGATGCAATGGAAATGATTATTGTCCACTGTCAGTTCTCAAGAACTATTCCGACGTCTATAAACCAGAAATGGAAATGAATCAGGTAAATTCAGAAGGTTCTAAAAAATTATGTGATGATAAAACTTTCAGTGGTGCAACTATAACATGTTTGGATCTTCTGCCATGGCTTCTCCGTTCTCATCTCTTCTGATTCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACAYTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTTTTTATTTCCTCCCTGCTCCGAACTTCTCTCTATTTTCTGAAAACTCGAAATCACAAAACTCCCTTTTTTCAGGGTAAATTTCACTATGGTTTCTGCCATTTCAATTATCGGGCTCTTTGCTCTCACGGGTTTTTCTACTTCTTATACAAATGGTACTAAGGAATTGGTTTTTGTTCAAACGGTAATAAACATTCGAAAAAATGATTCAATGAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGTTCCCAACTGATCCATATCAAGAGAGCGCATGGACATTTGGAGGTGGTGGATGGGGACAATTGAGTCCGGTGAGCGGTTTATAAAGGTGTTCTAAAACTAGATGGGTCATTTTCGAAAAAAAAATGCTCAAAATTATGAAACATTTCAGAGAATCCCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>182 122 88 70 62 60 58 45 44 42 41 35 30 30 25 23 18 17 3 3 2</canonical_bands>
                <polymorphic_bands>182 122 88 70 62 60 58 45 44 42 41 35 32 30 25 23 18 17 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCGCTCTCTTCTATTTATTTG</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAAAGTGCGTAGAGTAATG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>TCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACAYTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10681</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>402714</contig_pos>
        <strand>+</strand>
        <context>TTTAGACACT[C/T]ATTATAGAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACT</left_flank>
        <right_flank>ATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATCCACTGTATTCGGCATGTGTTATCATGGAACAATGGCAAGATTTACAAACAAATCAGACTTATTTCAAGGTGGGTTCTCTCCTTGGTTTTTAGAAATCTTATTTATCAATTTCAGATGATCTACCATCGTCACGAAAACGATACTTTGAATAATGTGATTACTTCTGGAATCCCTGGATGCAATGGAAATGATTATTGTCCACTGTCAGTTCTCAAGAACTATTCCGACGTCTATAAACCAGAAATGGAAATGAATCAGGTAAATTCAGAAGGTTCTAAAAAATTATGTGATGATAAAACTTTCAGTGGTGCAACTATAACATGTTTGGATCTTCTGCCATGGCTTCTCCGTTCTCATCTCTTCTGATTCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTTTTTATTTCCTCCCTGCTCCGAACTTCTCTCTATTTTCTGAAAACTCGAAATCACAAAACTCCCTTTTTTCAGGGTAAATTTCACTATGGTTTCTGCCATTTCAATTATCGGGCTCTTTGCTCTCACGGGTTTTTCTACTTCTTATACAAATGGTACTAAGGAATTGGTTTTTGTTCAAACGGTAATAAACATTCGAAAAAATGATTCAATGAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGTTCCCAACTGATCCATATCAAGAGAGCGCATGGACATTTGGAGGTGGTGGATGGGGACAATTGAGTCCGGTGAGCGGTTTATAAAGGTGTTCTAAAACTAGATGGGTCATTTTCGAAA</canonical>
            <polymorphic>ATATCCACTGTATTCGGCATGTGTTATCATGGAACAATGGCAAGATTTACAAACAAATCAGACTTATTTCAAGGTGGGTTCTCTCCTTGGTTTTTAGAAATCTTATTTATCAATTTCAGATGATCTACCATCGTCACGAAAACGATACTTTGAATAATGTGATTACTTCTGGAATCCCTGGATGCAATGGAAATGATTATTGTCCACTGTCAGTTCTCAAGAACTATTCCGACGTCTATAAACCAGAAATGGAAATGAATCAGGTAAATTCAGAAGGTTCTAAAAAATTATGTGATGATAAAACTTTCAGTGGTGCAACTATAACATGTTTGGATCTTCTGCCATGGCTTCTCCGTTCTCATCTCTTCTGATTCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTYATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTTTTTATTTCCTCCCTGCTCCGAACTTCTCTCTATTTTCTGAAAACTCGAAATCACAAAACTCCCTTTTTTCAGGGTAAATTTCACTATGGTTTCTGCCATTTCAATTATCGGGCTCTTTGCTCTCACGGGTTTTTCTACTTCTTATACAAATGGTACTAAGGAATTGGTTTTTGTTCAAACGGTAATAAACATTCGAAAAAATGATTCAATGAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGTTCCCAACTGATCCATATCAAGAGAGCGCATGGACATTTGGAGGTGGTGGATGGGGACAATTGAGTCCGGTGAGCGGTTTATAAAGGTGTTCTAAAACTAGATGGGTCATTTTCGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCGCTCTCTTCTATTTATTTG</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAAAGTGCGTAGAGTAATG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>TCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTYATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10682</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>402679</contig_pos>
        <strand>+</strand>
        <context>TAAACTTCGT[C/T]TGTCCATGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGT</left_flank>
        <right_flank>TGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAAT</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGGAGTCGCTCATCTAGCTGTTCAGCCACGTGGATATCCACTGTATTCGGCATGTGTTATCATGGAACAATGGCAAGATTTACAAACAAATCAGACTTATTTCAAGGTGGGTTCTCTCCTTGGTTTTTAGAAATCTTATTTATCAATTTCAGATGATCTACCATCGTCACGAAAACGATACTTTGAATAATGTGATTACTTCTGGAATCCCTGGATGCAATGGAAATGATTATTGTCCACTGTCAGTTCTCAAGAACTATTCCGACGTCTATAAACCAGAAATGGAAATGAATCAGGTAAATTCAGAAGGTTCTAAAAAATTATGTGATGATAAAACTTTCAGTGGTGCAACTATAACATGTTTGGATCTTCTGCCATGGCTTCTCCGTTCTCATCTCTTCTGATTCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTTTTTATTTCCTCCCTGCTCCGAACTTCTCTCTATTTTCTGAAAACTCGAAATCACAAAACTCCCTTTTTTCAGGGTAAATTTCACTATGGTTTCTGCCATTTCAATTATCGGGCTCTTTGCTCTCACGGGTTTTTCTACTTCTTATACAAATGGTACTAAGGAATTGGTTTTTGTTCAAACGGTAATAAACATTCGAAAAAATGATTCAATGAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGTTCCCAACTGATCCATATCAAGAGAGCGCATGGACATTTGGAGGTGGTGGATGGGGACAATTGAGTCCGGTGAGCGGTTTATA</canonical>
            <polymorphic>CTCGGAGTCGCTCATCTAGCTGTTCAGCCACGTGGATATCCACTGTATTCGGCATGTGTTATCATGGAACAATGGCAAGATTTACAAACAAATCAGACTTATTTCAAGGTGGGTTCTCTCCTTGGTTTTTAGAAATCTTATTTATCAATTTCAGATGATCTACCATCGTCACGAAAACGATACTTTGAATAATGTGATTACTTCTGGAATCCCTGGATGCAATGGAAATGATTATTGTCCACTGTCAGTTCTCAAGAACTATTCCGACGTCTATAAACCAGAAATGGAAATGAATCAGGTAAATTCAGAAGGTTCTAAAAAATTATGTGATGATAAAACTTTCAGTGGTGCAACTATAACATGTTTGGATCTTCTGCCATGGCTTCTCCGTTCTCATCTCTTCTGATTCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTYTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTTTTTATTTCCTCCCTGCTCCGAACTTCTCTCTATTTTCTGAAAACTCGAAATCACAAAACTCCCTTTTTTCAGGGTAAATTTCACTATGGTTTCTGCCATTTCAATTATCGGGCTCTTTGCTCTCACGGGTTTTTCTACTTCTTATACAAATGGTACTAAGGAATTGGTTTTTGTTCAAACGGTAATAAACATTCGAAAAAATGATTCAATGAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGTTCCCAACTGATCCATATCAAGAGAGCGCATGGACATTTGGAGGTGGTGGATGGGGACAATTGAGTCCGGTGAGCGGTTTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCGCTCTCTTCTATTTATTTG</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAAAGTGCGTAGAGTAATG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>TCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTYTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10683</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>402650</contig_pos>
        <strand>+</strand>
        <context>TGTACATTAC[C/T]ATTGAAACAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTAC</left_flank>
        <right_flank>ATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAA</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACTACACTATACGCCCTTTTCTCTTTGCTCGGAGTCGCTCATCTAGCTGTTCAGCCACGTGGATATCCACTGTATTCGGCATGTGTTATCATGGAACAATGGCAAGATTTACAAACAAATCAGACTTATTTCAAGGTGGGTTCTCTCCTTGGTTTTTAGAAATCTTATTTATCAATTTCAGATGATCTACCATCGTCACGAAAACGATACTTTGAATAATGTGATTACTTCTGGAATCCCTGGATGCAATGGAAATGATTATTGTCCACTGTCAGTTCTCAAGAACTATTCCGACGTCTATAAACCAGAAATGGAAATGAATCAGGTAAATTCAGAAGGTTCTAAAAAATTATGTGATGATAAAACTTTCAGTGGTGCAACTATAACATGTTTGGATCTTCTGCCATGGCTTCTCCGTTCTCATCTCTTCTGATTCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTTTTTATTTCCTCCCTGCTCCGAACTTCTCTCTATTTTCTGAAAACTCGAAATCACAAAACTCCCTTTTTTCAGGGTAAATTTCACTATGGTTTCTGCCATTTCAATTATCGGGCTCTTTGCTCTCACGGGTTTTTCTACTTCTTATACAAATGGTACTAAGGAATTGGTTTTTGTTCAAACGGTAATAAACATTCGAAAAAATGATTCAATGAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGTTCCCAACTGATCCATATCAAGAGAGCGCATGGACATTTGGAGGTGGTGGATGG</canonical>
            <polymorphic>ACACTACACTATACGCCCTTTTCTCTTTGCTCGGAGTCGCTCATCTAGCTGTTCAGCCACGTGGATATCCACTGTATTCGGCATGTGTTATCATGGAACAATGGCAAGATTTACAAACAAATCAGACTTATTTCAAGGTGGGTTCTCTCCTTGGTTTTTAGAAATCTTATTTATCAATTTCAGATGATCTACCATCGTCACGAAAACGATACTTTGAATAATGTGATTACTTCTGGAATCCCTGGATGCAATGGAAATGATTATTGTCCACTGTCAGTTCTCAAGAACTATTCCGACGTCTATAAACCAGAAATGGAAATGAATCAGGTAAATTCAGAAGGTTCTAAAAAATTATGTGATGATAAAACTTTCAGTGGTGCAACTATAACATGTTTGGATCTTCTGCCATGGCTTCTCCGTTCTCATCTCTTCTGATTCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACYATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTTTTTATTTCCTCCCTGCTCCGAACTTCTCTCTATTTTCTGAAAACTCGAAATCACAAAACTCCCTTTTTTCAGGGTAAATTTCACTATGGTTTCTGCCATTTCAATTATCGGGCTCTTTGCTCTCACGGGTTTTTCTACTTCTTATACAAATGGTACTAAGGAATTGGTTTTTGTTCAAACGGTAATAAACATTCGAAAAAATGATTCAATGAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGTTCCCAACTGATCCATATCAAGAGAGCGCATGGACATTTGGAGGTGGTGGATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCGCTCTCTTCTATTTATTTG</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAAAGTGCGTAGAGTAATG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>TCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACYATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10684</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>412806</contig_pos>
        <strand>+</strand>
        <context>GTCATATGGT[G/T]GAGAAAGAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATATGATCTGTTCGTTTTACTTCTTCCCGTAGTTTGAACAGTCATATGGT</left_flank>
        <right_flank>GAGAAAGAATCCGAGATCTTCGAGTGGTGAAACAATGATGAGACAGATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGTAGCAAAAAAGACAAGGTCTGCAAACAACTCTCACGTATCTCACTTGAGCCCGTGCGGGATGCTCCATCGGCCCGTCTCGTTGTCTGGTGTCTCTTTCCTCTGTTACTATCTGTCTGCCTATCTCTACAATTATTATCGGCAGGATGGATGCCTATGACGTAGCACCTTTTGCCCCTTCGCTCTCACCACACTAATTTCTCTGATTCTCTTCGATTTGCTGTGCTCTTTTGATCTCTCTCACCCCACAAAGTCGCCTCTTTTTCGTTCGTTTATTACCTTTTGGTGTGTGCCTGTATTCATATTTACCACCACCCTTTGTTCCACCATCCATTCGTGTTCACCAATCCAAAGTTCGGACCAACTGAGGACGTTTTCTATAGCTGGTTTATTGACACATTAGCTCAGTATTATTGATTTCATTGCTGATCTCTATCTATTAGAAGAATATGATCTGTTCGTTTTACTTCTTCCCGTAGTTTGAACAGTCATATGGTTGAGAAAGAATCCGAGATCTTCGAGTGGTGAAACAATGATGAGACAGATGGTTTTTTTGTGCAATAAGTGGACATTTGGTGTCTCGACTTTTGAATGATTCGATTAGGTCTCAATATTTTTTCTATTCTGAAAGAGTGAAATCATAAATCTCTAGTTAATATAATTCCAGATAAAATTATAAATTAGTTGGTTTGAGAGACAAAAAAGGAAATTTCTGACGTGAGTTTCGACCAAACGTCATACTCAGATAATTAGATAAGGTCACAGTAAAAACAAAACATGTTGCGAAATCTTCAGCTTATTTTCTCGAGTTGTTCTTTCATTTCGAAAAATGTTATTTTTTACAATTTTTCGGAGTTTTTTTTAATGTTCAAAATCAATGAAACGCATCGAAAAAATTGAAAAAAAAATGGCCAGAAAACATTTACGAATATACATGCTCCTTTAAGGATTTTCTATCGGACCTAAGCTCCGCCCACTCACGAATTTTCGTTCGCAAC</canonical>
            <polymorphic>TAAGTAGCAAAAAAGACAAGGTCTGCAAACAACTCTCACGTATCTCACTTGAGCCCGTGCGGGATGCTCCATCGGCCCGTCTCGTTGTCTGGTGTCTCTTTCCTCTGTTACTATCTGTCTGCCTATCTCTACAATTATTATCGGCAGGATGGATGCCTATGACGTAGCACCTTTTGCCCCTTCGCTCTCACCACACTAATTTCTCTGATTCTCTTCGATTTGCTGTGCTCTTTTGATCTCTCTCACCCCACAAAGTCGCCTCTTTTTCGTTCGTTTATTACCTTTTGGTGTGTGCCTGTATTCATATTTACCACCACCCTTTGTTCCACCATCCATTCGTGTTCACCAATCCAAAGTTCGGACCAACTGAGGACGTTTTCTATAGCTGGTTTATTGACACATTAGCTCAGTATTATTGATTTCATTGCTGATCTCTATCTATTAGAAGAATATGATCTGTTCGTTTTACTTCTTCCCGTAGTTTGAACAGTCATATGGTKGAGAAAGAATCCGAGATCTTCGAGTGGTGAAACAATGATGAGACAGATGGTTTTTTTGTGCAATAAGTGGACATTTGGTGTCTCGACTTTTGAATGATTCGATTAGGTCTCAATATTTTTTCTATTCTGAAAGAGTGAAATCATAAATCTCTAGTTAATATAATTCCAGATAAAATTATAAATTAGTTGGTTTGAGAGACAAAAAAGGAAATTTCTGACGTGAGTTTCGACCAAACGTCATACTCAGATAATTAGATAAGGTCACAGTAAAAACAAAACATGTTGCGAAATCTTCAGCTTATTTTCTCGAGTTGTTCTTTCATTTCGAAAAATGTTATTTTTTACAATTTTTCGGAGTTTTTTTTAATGTTCAAAATCAATGAAACGCATCGAAAAAATTGAAAAAAAAATGGCCAGAAAACATTTACGAATATACATGCTCCTTTAAGGATTTTCTATCGGACCTAAGCTCCGCCCACTCACGAATTTTCGTTCGCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTTTCTATAGCTGGTTTATTG</pcr_primer_p1>
		<pcr_primer_p2>AATATTGAGACCTAATCGAATCA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CGTTTTCTATAGCTGGTTTATTGACACATTAGCTCAGTATTATTGATTTCATTGCTGATCTCTATCTATTAGAAGAATATGATCTGTTCGTTTTACTTCTTCCCGTAGTTTGAACAGTCATATGGTTGAGAAAGAATCCGAGATCTTCGAGTGGTGAAACAATGATGAGACAGATGGTTTTTTTGTGCAATAAGTGGACATTTGGTGTCTCGACTTTTGAATGATTCGATTAGGTCTCAATATT</canonical_amplicon>
		<polymorphic_amplicon>CGTTTTCTATAGCTGGTTTATTGACACATTAGCTCAGTATTATTGATTTCATTGCTGATCTCTATCTATTAGAAGAATATGATCTGTTCGTTTTACTTCTTCCCGTAGTTTGAACAGTCATATGGTKGAGAAAGAATCCGAGATCTTCGAGTGGTGAAACAATGATGAGACAGATGGTTTTTTTGTGCAATAAGTGGACATTTGGTGTCTCGACTTTTGAATGATTCGATTAGGTCTCAATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10685</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>412869</contig_pos>
        <strand>+</strand>
        <context>TTTTTGTGCA[A/T]TAAGTGGACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGATCTTCGAGTGGTGAAACAATGATGAGACAGATGGTTTTTTTGTGCA</left_flank>
        <right_flank>TAAGTGGACATTTGGTGTCTCGACTTTTGAATGATTCGATTAGGTCTCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCTCCATCGGCCCGTCTCGTTGTCTGGTGTCTCTTTCCTCTGTTACTATCTGTCTGCCTATCTCTACAATTATTATCGGCAGGATGGATGCCTATGACGTAGCACCTTTTGCCCCTTCGCTCTCACCACACTAATTTCTCTGATTCTCTTCGATTTGCTGTGCTCTTTTGATCTCTCTCACCCCACAAAGTCGCCTCTTTTTCGTTCGTTTATTACCTTTTGGTGTGTGCCTGTATTCATATTTACCACCACCCTTTGTTCCACCATCCATTCGTGTTCACCAATCCAAAGTTCGGACCAACTGAGGACGTTTTCTATAGCTGGTTTATTGACACATTAGCTCAGTATTATTGATTTCATTGCTGATCTCTATCTATTAGAAGAATATGATCTGTTCGTTTTACTTCTTCCCGTAGTTTGAACAGTCATATGGTTGAGAAAGAATCCGAGATCTTCGAGTGGTGAAACAATGATGAGACAGATGGTTTTTTTGTGCAATAAGTGGACATTTGGTGTCTCGACTTTTGAATGATTCGATTAGGTCTCAATATTTTTTCTATTCTGAAAGAGTGAAATCATAAATCTCTAGTTAATATAATTCCAGATAAAATTATAAATTAGTTGGTTTGAGAGACAAAAAAGGAAATTTCTGACGTGAGTTTCGACCAAACGTCATACTCAGATAATTAGATAAGGTCACAGTAAAAACAAAACATGTTGCGAAATCTTCAGCTTATTTTCTCGAGTTGTTCTTTCATTTCGAAAAATGTTATTTTTTACAATTTTTCGGAGTTTTTTTTAATGTTCAAAATCAATGAAACGCATCGAAAAAATTGAAAAAAAAATGGCCAGAAAACATTTACGAATATACATGCTCCTTTAAGGATTTTCTATCGGACCTAAGCTCCGCCCACTCACGAATTTTCGTTCGCAACATTGAAATTGGACCAGAGTAATACAGAAATTTAAAAAAAAATTGAATTATTAATATGGAATGA</canonical>
            <polymorphic>ATGCTCCATCGGCCCGTCTCGTTGTCTGGTGTCTCTTTCCTCTGTTACTATCTGTCTGCCTATCTCTACAATTATTATCGGCAGGATGGATGCCTATGACGTAGCACCTTTTGCCCCTTCGCTCTCACCACACTAATTTCTCTGATTCTCTTCGATTTGCTGTGCTCTTTTGATCTCTCTCACCCCACAAAGTCGCCTCTTTTTCGTTCGTTTATTACCTTTTGGTGTGTGCCTGTATTCATATTTACCACCACCCTTTGTTCCACCATCCATTCGTGTTCACCAATCCAAAGTTCGGACCAACTGAGGACGTTTTCTATAGCTGGTTTATTGACACATTAGCTCAGTATTATTGATTTCATTGCTGATCTCTATCTATTAGAAGAATATGATCTGTTCGTTTTACTTCTTCCCGTAGTTTGAACAGTCATATGGTTGAGAAAGAATCCGAGATCTTCGAGTGGTGAAACAATGATGAGACAGATGGTTTTTTTGTGCAWTAAGTGGACATTTGGTGTCTCGACTTTTGAATGATTCGATTAGGTCTCAATATTTTTTCTATTCTGAAAGAGTGAAATCATAAATCTCTAGTTAATATAATTCCAGATAAAATTATAAATTAGTTGGTTTGAGAGACAAAAAAGGAAATTTCTGACGTGAGTTTCGACCAAACGTCATACTCAGATAATTAGATAAGGTCACAGTAAAAACAAAACATGTTGCGAAATCTTCAGCTTATTTTCTCGAGTTGTTCTTTCATTTCGAAAAATGTTATTTTTTACAATTTTTCGGAGTTTTTTTTAATGTTCAAAATCAATGAAACGCATCGAAAAAATTGAAAAAAAAATGGCCAGAAAACATTTACGAATATACATGCTCCTTTAAGGATTTTCTATCGGACCTAAGCTCCGCCCACTCACGAATTTTCGTTCGCAACATTGAAATTGGACCAGAGTAATACAGAAATTTAAAAAAAAATTGAATTATTAATATGGAATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATCTGTTCGTTTTACTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>TTGTCTCTCAAACCAACTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGATCTGTTCGTTTTACTTCTTCCCGTAGTTTGAACAGTCATATGGTTGAGAAAGAATCCGAGATCTTCGAGTGGTGAAACAATGATGAGACAGATGGTTTTTTTGTGCAATAAGTGGACATTTGGTGTCTCGACTTTTGAATGATTCGATTAGGTCTCAATATTTTTTCTATTCTGAAAGAGTGAAATCATAAATCTCTAGTTAATATAATTCCAGATAAAATTATAAATTAGTTGGTTTGAGAGACAA</canonical_amplicon>
		<polymorphic_amplicon>TGATCTGTTCGTTTTACTTCTTCCCGTAGTTTGAACAGTCATATGGTTGAGAAAGAATCCGAGATCTTCGAGTGGTGAAACAATGATGAGACAGATGGTTTTTTTGTGCAWTAAGTGGACATTTGGTGTCTCGACTTTTGAATGATTCGATTAGGTCTCAATATTTTTTCTATTCTGAAAGAGTGAAATCATAAATCTCTAGTTAATATAATTCCAGATAAAATTATAAATTAGTTGGTTTGAGAGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10686</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>412898</contig_pos>
        <strand>+</strand>
        <context>CTCGACTTTT[C/G]AATGATTCGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GACAGATGGTTTTTTTGTGCAATAAGTGGACATTTGGTGTCTCGACTTTT</left_flank>
        <right_flank>AATGATTCGATTAGGTCTCAATATTTTTTCTATTCTGAAAGAGTGAAATC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCTCTTTCCTCTGTTACTATCTGTCTGCCTATCTCTACAATTATTATCGGCAGGATGGATGCCTATGACGTAGCACCTTTTGCCCCTTCGCTCTCACCACACTAATTTCTCTGATTCTCTTCGATTTGCTGTGCTCTTTTGATCTCTCTCACCCCACAAAGTCGCCTCTTTTTCGTTCGTTTATTACCTTTTGGTGTGTGCCTGTATTCATATTTACCACCACCCTTTGTTCCACCATCCATTCGTGTTCACCAATCCAAAGTTCGGACCAACTGAGGACGTTTTCTATAGCTGGTTTATTGACACATTAGCTCAGTATTATTGATTTCATTGCTGATCTCTATCTATTAGAAGAATATGATCTGTTCGTTTTACTTCTTCCCGTAGTTTGAACAGTCATATGGTTGAGAAAGAATCCGAGATCTTCGAGTGGTGAAACAATGATGAGACAGATGGTTTTTTTGTGCAATAAGTGGACATTTGGTGTCTCGACTTTTGAATGATTCGATTAGGTCTCAATATTTTTTCTATTCTGAAAGAGTGAAATCATAAATCTCTAGTTAATATAATTCCAGATAAAATTATAAATTAGTTGGTTTGAGAGACAAAAAAGGAAATTTCTGACGTGAGTTTCGACCAAACGTCATACTCAGATAATTAGATAAGGTCACAGTAAAAACAAAACATGTTGCGAAATCTTCAGCTTATTTTCTCGAGTTGTTCTTTCATTTCGAAAAATGTTATTTTTTACAATTTTTCGGAGTTTTTTTTAATGTTCAAAATCAATGAAACGCATCGAAAAAATTGAAAAAAAAATGGCCAGAAAACATTTACGAATATACATGCTCCTTTAAGGATTTTCTATCGGACCTAAGCTCCGCCCACTCACGAATTTTCGTTCGCAACATTGAAATTGGACCAGAGTAATACAGAAATTTAAAAAAAAATTGAATTATTAATATGGAATGACCAGATGCTTATGATACCGAAAGTGGACC</canonical>
            <polymorphic>TGTCTCTTTCCTCTGTTACTATCTGTCTGCCTATCTCTACAATTATTATCGGCAGGATGGATGCCTATGACGTAGCACCTTTTGCCCCTTCGCTCTCACCACACTAATTTCTCTGATTCTCTTCGATTTGCTGTGCTCTTTTGATCTCTCTCACCCCACAAAGTCGCCTCTTTTTCGTTCGTTTATTACCTTTTGGTGTGTGCCTGTATTCATATTTACCACCACCCTTTGTTCCACCATCCATTCGTGTTCACCAATCCAAAGTTCGGACCAACTGAGGACGTTTTCTATAGCTGGTTTATTGACACATTAGCTCAGTATTATTGATTTCATTGCTGATCTCTATCTATTAGAAGAATATGATCTGTTCGTTTTACTTCTTCCCGTAGTTTGAACAGTCATATGGTTGAGAAAGAATCCGAGATCTTCGAGTGGTGAAACAATGATGAGACAGATGGTTTTTTTGTGCAATAAGTGGACATTTGGTGTCTCGACTTTTSAATGATTCGATTAGGTCTCAATATTTTTTCTATTCTGAAAGAGTGAAATCATAAATCTCTAGTTAATATAATTCCAGATAAAATTATAAATTAGTTGGTTTGAGAGACAAAAAAGGAAATTTCTGACGTGAGTTTCGACCAAACGTCATACTCAGATAATTAGATAAGGTCACAGTAAAAACAAAACATGTTGCGAAATCTTCAGCTTATTTTCTCGAGTTGTTCTTTCATTTCGAAAAATGTTATTTTTTACAATTTTTCGGAGTTTTTTTTAATGTTCAAAATCAATGAAACGCATCGAAAAAATTGAAAAAAAAATGGCCAGAAAACATTTACGAATATACATGCTCCTTTAAGGATTTTCTATCGGACCTAAGCTCCGCCCACTCACGAATTTTCGTTCGCAACATTGAAATTGGACCAGAGTAATACAGAAATTTAAAAAAAAATTGAATTATTAATATGGAATGACCAGATGCTTATGATACCGAAAGTGGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATCTGTTCGTTTTACTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>TTGTCTCTCAAACCAACTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGATCTGTTCGTTTTACTTCTTCCCGTAGTTTGAACAGTCATATGGTTGAGAAAGAATCCGAGATCTTCGAGTGGTGAAACAATGATGAGACAGATGGTTTTTTTGTGCAATAAGTGGACATTTGGTGTCTCGACTTTTGAATGATTCGATTAGGTCTCAATATTTTTTCTATTCTGAAAGAGTGAAATCATAAATCTCTAGTTAATATAATTCCAGATAAAATTATAAATTAGTTGGTTTGAGAGACAA</canonical_amplicon>
		<polymorphic_amplicon>TGATCTGTTCGTTTTACTTCTTCCCGTAGTTTGAACAGTCATATGGTTGAGAAAGAATCCGAGATCTTCGAGTGGTGAAACAATGATGAGACAGATGGTTTTTTTGTGCAATAAGTGGACATTTGGTGTCTCGACTTTTSAATGATTCGATTAGGTCTCAATATTTTTTCTATTCTGAAAGAGTGAAATCATAAATCTCTAGTTAATATAATTCCAGATAAAATTATAAATTAGTTGGTTTGAGAGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10687</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>413070</contig_pos>
        <strand>+</strand>
        <context>AGATAAGGTC[A/C]CAGTAAAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTGACGTGAGTTTCGACCAAACGTCATACTCAGATAATTAGATAAGGTC</left_flank>
        <right_flank>CAGTAAAAACAAAACATGTTGCGAAATCTTCAGCTTATTTTCTCGAGTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGTTCGTTTATTACCTTTTGGTGTGTGCCTGTATTCATATTTACCACCACCCTTTGTTCCACCATCCATTCGTGTTCACCAATCCAAAGTTCGGACCAACTGAGGACGTTTTCTATAGCTGGTTTATTGACACATTAGCTCAGTATTATTGATTTCATTGCTGATCTCTATCTATTAGAAGAATATGATCTGTTCGTTTTACTTCTTCCCGTAGTTTGAACAGTCATATGGTTGAGAAAGAATCCGAGATCTTCGAGTGGTGAAACAATGATGAGACAGATGGTTTTTTTGTGCAATAAGTGGACATTTGGTGTCTCGACTTTTGAATGATTCGATTAGGTCTCAATATTTTTTCTATTCTGAAAGAGTGAAATCATAAATCTCTAGTTAATATAATTCCAGATAAAATTATAAATTAGTTGGTTTGAGAGACAAAAAAGGAAATTTCTGACGTGAGTTTCGACCAAACGTCATACTCAGATAATTAGATAAGGTCACAGTAAAAACAAAACATGTTGCGAAATCTTCAGCTTATTTTCTCGAGTTGTTCTTTCATTTCGAAAAATGTTATTTTTTACAATTTTTCGGAGTTTTTTTTAATGTTCAAAATCAATGAAACGCATCGAAAAAATTGAAAAAAAAATGGCCAGAAAACATTTACGAATATACATGCTCCTTTAAGGATTTTCTATCGGACCTAAGCTCCGCCCACTCACGAATTTTCGTTCGCAACATTGAAATTGGACCAGAGTAATACAGAAATTTAAAAAAAAATTGAATTATTAATATGGAATGACCAGATGCTTATGATACCGAAAGTGGACCATCCAAAACAAAAAGCCCATTGAATTTGAATTTTTTCTACCAATACTGAGAAAGAAGGTTTTTCCCAACAAAAAAATTCTAACGACATCCGATCAAATGTTCTTCCCTCAAAAAACAAGAAGTTTGGCTCATCGAATGTACATAAATGAAATAAAAACAAAGAGAGCTTCTT</canonical>
            <polymorphic>TTTCGTTCGTTTATTACCTTTTGGTGTGTGCCTGTATTCATATTTACCACCACCCTTTGTTCCACCATCCATTCGTGTTCACCAATCCAAAGTTCGGACCAACTGAGGACGTTTTCTATAGCTGGTTTATTGACACATTAGCTCAGTATTATTGATTTCATTGCTGATCTCTATCTATTAGAAGAATATGATCTGTTCGTTTTACTTCTTCCCGTAGTTTGAACAGTCATATGGTTGAGAAAGAATCCGAGATCTTCGAGTGGTGAAACAATGATGAGACAGATGGTTTTTTTGTGCAATAAGTGGACATTTGGTGTCTCGACTTTTGAATGATTCGATTAGGTCTCAATATTTTTTCTATTCTGAAAGAGTGAAATCATAAATCTCTAGTTAATATAATTCCAGATAAAATTATAAATTAGTTGGTTTGAGAGACAAAAAAGGAAATTTCTGACGTGAGTTTCGACCAAACGTCATACTCAGATAATTAGATAAGGTCMCAGTAAAAACAAAACATGTTGCGAAATCTTCAGCTTATTTTCTCGAGTTGTTCTTTCATTTCGAAAAATGTTATTTTTTACAATTTTTCGGAGTTTTTTTTAATGTTCAAAATCAATGAAACGCATCGAAAAAATTGAAAAAAAAATGGCCAGAAAACATTTACGAATATACATGCTCCTTTAAGGATTTTCTATCGGACCTAAGCTCCGCCCACTCACGAATTTTCGTTCGCAACATTGAAATTGGACCAGAGTAATACAGAAATTTAAAAAAAAATTGAATTATTAATATGGAATGACCAGATGCTTATGATACCGAAAGTGGACCATCCAAAACAAAAAGCCCATTGAATTTGAATTTTTTCTACCAATACTGAGAAAGAAGGTTTTTCCCAACAAAAAAATTCTAACGACATCCGATCAAATGTTCTTCCCTCAAAAAACAAGAAGTTTGGCTCATCGAATGTACATAAATGAAATAAAAACAAAGAGAGCTTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>498 277 225</canonical_bands>
                <polymorphic_bands>775 225</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>214 176 127 106 85 57 54 42 31 26 19 13 12 11 9 4 4 3 3 2 2</canonical_bands>
                <polymorphic_bands>256 176 127 106 85 57 54 31 26 19 13 12 11 9 4 4 3 3 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGATTCGATTAGGTCTCAATA</pcr_primer_p1>
		<pcr_primer_p2>ACATTTTTCGAAATGAAAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AATGATTCGATTAGGTCTCAATATTTTTTCTATTCTGAAAGAGTGAAATCATAAATCTCTAGTTAATATAATTCCAGATAAAATTATAAATTAGTTGGTTTGAGAGACAAAAAAGGAAATTTCTGACGTGAGTTTCGACCAAACGTCATACTCAGATAATTAGATAAGGTCACAGTAAAAACAAAACATGTTGCGAAATCTTCAGCTTATTTTCTCGAGTTGTTCTTTCATTTCGAAAAATGT</canonical_amplicon>
		<polymorphic_amplicon>AATGATTCGATTAGGTCTCAATATTTTTTCTATTCTGAAAGAGTGAAATCATAAATCTCTAGTTAATATAATTCCAGATAAAATTATAAATTAGTTGGTTTGAGAGACAAAAAAGGAAATTTCTGACGTGAGTTTCGACCAAACGTCATACTCAGATAATTAGATAAGGTCMCAGTAAAAACAAAACATGTTGCGAAATCTTCAGCTTATTTTCTCGAGTTGTTCTTTCATTTCGAAAAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10688</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>414705</contig_pos>
        <strand>+</strand>
        <context>AKRAACCTGG[A/T]TTTCACACTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAATGAACCTGG</left_flank>
        <right_flank>TTTCACACTTGTGAACCGCCGTAGTTTCTTTTAAAACCAAAATCTTTGGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAGTGGTCAAAATCTTTTTTTCACATCTCTCAAATTTCTCTTTATTTTCTCTTCTGATGTGTGAAATGACGTGACGGTGTTCACACTTTTCAATACCCTTTGATTTACGACTTCTAACTTATGCCGCATAACTTTTTTTTTATTGAGCTGTTAAAAATATTTTAACTTTTAGCAAAATGGCAGAGTCTCCACCTCGGGTGGACTCGTCAGCTCCAGACGTCGGGGATCCGACGTCAATGATGGAGAGACTTCGTTTAGGGGATGACGGAGGAAAGGATGATGGTATGTGTTGAAAGTTATGAAATTGAAAAAAAAAATTAAAAAATTAAGAATTTGACAATAAGTCAGTTTCTTCTGCTCAATACTCTCAAGCATCAGAGGCAACGACAGCTGTCAAACAACAACCGTTTTTGCATACGATGACCAAAGTGAGTCTTTTAAAATTTGCATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAATGAACCTGGTTTTCACACTTGTGAACCGCCGTAGTTTCTTTTAAAACCAAAATCTTTGGACCAACTAAATCAGATATCATATAACTCGATGAGCACTACATAATGCTACTGTTTGAAAAATAATTGCTTGTCTATGAGCAAAGTTACAGACGAAACAAAAAACTGACAGATTCCGACCCGGGCCAGCCACTTTAGGGCTTATAACATTGATCATTGACATTGACAAAGTACAGTTTCTCAAATAATACCATTTTGTAGTTAAGCTGTATAGTGGCTGATGTAGTTGATCCAAAAATATTTTGTTCTTGAAGAAAATATGATAGGGCTATACTTTAAAATTTCAGGTATACTGTCACATTGACGACGAAACAGATCCCTACATGCTCGAAGTGCACGTACCACCGGATCTTATCACTTTGGGAGATTTGAAACGAGTATTAATGAGAACAAACTTTAAATACTACAGAAAAGCATTGGATCCGGACTCTGGATAGTGAGTTTTCGACTTGA</canonical>
            <polymorphic>TAAGTGGTCAAAATCTTTTTTTCACATCTCTCAAATTTCTCTTTATTTTCTCTTCTGATGTGTGAAATGACGTGACGGTGTTCACACTTTTCAATACCCTTTGATTTACGACTTCTAACTTATGCCGCATAACTTTTTTTTTATTGAGCTGTTAAAAATATTTTAACTTTTAGCAAAATGGCAGAGTCTCCACCTCGGGTGGACTCGTCAGCTCCAGACGTCGGGGATCCGACGTCAATGATGGAGAGACTTCGTTTAGGGGATGACGGAGGAAAGGATGATGGTATGTGTTGAAAGTTATGAAATTGAAAAAAAAAATTAAAAAATTAAGAATTTGACAATAAGTCAGTTTCTTCTGCTCAATACTCTCAAGCATCAGAGGCAACGACAGCTGTCAAACAACAACCGTTTTTGCATACGATGACCAAAGTGAGTCTTTTAAAATTTGCATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAATGAACCTGGWTTTCACACTTGTGAACCGCCGTAGTTTCTTTTAAAACCAAAATCTTTGGACCAACTAAATCAGATATCATATAACTCGATGAGCACTACATAATGCTACTGTTTGAAAAATAATTGCTTGTCTATGAGCAAAGTTACAGACGAAACAAAAAACTGACAGATTCCGACCCGGGCCAGCCACTTTAGGGCTTATAACATTGATCATTGACATTGACAAAGTACAGTTTCTCAAATAATACCATTTTGTAGTTAAGCTGTATAGTGGCTGATGTAGTTGATCCAAAAATATTTTGTTCTTGAAGAAAATATGATAGGGCTATACTTTAAAATTTCAGGTATACTGTCACATTGACGACGAAACAGATCCCTACATGCTCGAAGTGCACGTACCACCGGATCTTATCACTTTGGGAGATTTGAAACGAGTATTAATGAGAACAAACTTTAAATACTACAGAAAAGCATTGGATCCGGACTCTGGATAGTGAGTTTTCGACTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACCWGGT</site>
                <isoschizomers>
                    <enzyme>MabI</enzyme>
                    <enzyme>SexAI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCATTTAAATTGGAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GTCAATGTGACAGTATACCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>406</pcr_amplicon_size>
		<canonical_amplicon>TGCATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAATGAACCTGGTTTTCACACTTGTGAACCGCCGTAGTTTCTTTTAAAACCAAAATCTTTGGACCAACTAAATCAGATATCATATAACTCGATGAGCACTACATAATGCTACTGTTTGAAAAATAATTGCTTGTCTATGAGCAAAGTTACAGACGAAACAAAAAACTGACAGATTCCGACCCGGGCCAGCCACTTTAGGGCTTATAACATTGATCATTGACATTGACAAAGTACAGTTTCTCAAATAATACCATTTTGTAGTTAAGCTGTATAGTGGCTGATGTAGTTGATCCAAAAATATTTTGTTCTTGAAGAAAATATGATAGGGCTATACTTTAAAATTTCAGGTATACTGTCACATTGAC</canonical_amplicon>
		<polymorphic_amplicon>TGCATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAATGAACCTGGWTTTCACACTTGTGAACCGCCGTAGTTTCTTTTAAAACCAAAATCTTTGGACCAACTAAATCAGATATCATATAACTCGATGAGCACTACATAATGCTACTGTTTGAAAAATAATTGCTTGTCTATGAGCAAAGTTACAGACGAAACAAAAAACTGACAGATTCCGACCCGGGCCAGCCACTTTAGGGCTTATAACATTGATCATTGACATTGACAAAGTACAGTTTCTCAAATAATACCATTTTGTAGTTAAGCTGTATAGTGGCTGATGTAGTTGATCCAAAAATATTTTGTTCTTGAAGAAAATATGATAGGGCTATACTTTAAAATTTCAGGTATACTGTCACATTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10689</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>414697</contig_pos>
        <strand>+</strand>
        <context>GAGAAAGAAK[A/G]AACCTGGWTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTTGCATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAAT</left_flank>
        <right_flank>AACCTGGTTTTCACACTTGTGAACCGCCGTAGTTTCTTTTAAAACCAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGATTCATAAGTGGTCAAAATCTTTTTTTCACATCTCTCAAATTTCTCTTTATTTTCTCTTCTGATGTGTGAAATGACGTGACGGTGTTCACACTTTTCAATACCCTTTGATTTACGACTTCTAACTTATGCCGCATAACTTTTTTTTTATTGAGCTGTTAAAAATATTTTAACTTTTAGCAAAATGGCAGAGTCTCCACCTCGGGTGGACTCGTCAGCTCCAGACGTCGGGGATCCGACGTCAATGATGGAGAGACTTCGTTTAGGGGATGACGGAGGAAAGGATGATGGTATGTGTTGAAAGTTATGAAATTGAAAAAAAAAATTAAAAAATTAAGAATTTGACAATAAGTCAGTTTCTTCTGCTCAATACTCTCAAGCATCAGAGGCAACGACAGCTGTCAAACAACAACCGTTTTTGCATACGATGACCAAAGTGAGTCTTTTAAAATTTGCATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAATGAACCTGGTTTTCACACTTGTGAACCGCCGTAGTTTCTTTTAAAACCAAAATCTTTGGACCAACTAAATCAGATATCATATAACTCGATGAGCACTACATAATGCTACTGTTTGAAAAATAATTGCTTGTCTATGAGCAAAGTTACAGACGAAACAAAAAACTGACAGATTCCGACCCGGGCCAGCCACTTTAGGGCTTATAACATTGATCATTGACATTGACAAAGTACAGTTTCTCAAATAATACCATTTTGTAGTTAAGCTGTATAGTGGCTGATGTAGTTGATCCAAAAATATTTTGTTCTTGAAGAAAATATGATAGGGCTATACTTTAAAATTTCAGGTATACTGTCACATTGACGACGAAACAGATCCCTACATGCTCGAAGTGCACGTACCACCGGATCTTATCACTTTGGGAGATTTGAAACGAGTATTAATGAGAACAAACTTTAAATACTACAGAAAAGCATTGGATCCGGACTCTGGATAGTGAGTTTT</canonical>
            <polymorphic>GTGATTCATAAGTGGTCAAAATCTTTTTTTCACATCTCTCAAATTTCTCTTTATTTTCTCTTCTGATGTGTGAAATGACGTGACGGTGTTCACACTTTTCAATACCCTTTGATTTACGACTTCTAACTTATGCCGCATAACTTTTTTTTTATTGAGCTGTTAAAAATATTTTAACTTTTAGCAAAATGGCAGAGTCTCCACCTCGGGTGGACTCGTCAGCTCCAGACGTCGGGGATCCGACGTCAATGATGGAGAGACTTCGTTTAGGGGATGACGGAGGAAAGGATGATGGTATGTGTTGAAAGTTATGAAATTGAAAAAAAAAATTAAAAAATTAAGAATTTGACAATAAGTCAGTTTCTTCTGCTCAATACTCTCAAGCATCAGAGGCAACGACAGCTGTCAAACAACAACCGTTTTTGCATACGATGACCAAAGTGAGTCTTTTAAAATTTGCATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAATRAACCTGGTTTTCACACTTGTGAACCGCCGTAGTTTCTTTTAAAACCAAAATCTTTGGACCAACTAAATCAGATATCATATAACTCGATGAGCACTACATAATGCTACTGTTTGAAAAATAATTGCTTGTCTATGAGCAAAGTTACAGACGAAACAAAAAACTGACAGATTCCGACCCGGGCCAGCCACTTTAGGGCTTATAACATTGATCATTGACATTGACAAAGTACAGTTTCTCAAATAATACCATTTTGTAGTTAAGCTGTATAGTGGCTGATGTAGTTGATCCAAAAATATTTTGTTCTTGAAGAAAATATGATAGGGCTATACTTTAAAATTTCAGGTATACTGTCACATTGACGACGAAACAGATCCCTACATGCTCGAAGTGCACGTACCACCGGATCTTATCACTTTGGGAGATTTGAAACGAGTATTAATGAGAACAAACTTTAAATACTACAGAAAAGCATTGGATCCGGACTCTGGATAGTGAGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGTCTTTTAAAATTTGCATTTA</pcr_primer_p1>
		<pcr_primer_p2>GTCAATGTGACAGTATACCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>422</pcr_amplicon_size>
		<canonical_amplicon>TGAGTCTTTTAAAATTTGCATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAATGAACCTGGTTTTCACACTTGTGAACCGCCGTAGTTTCTTTTAAAACCAAAATCTTTGGACCAACTAAATCAGATATCATATAACTCGATGAGCACTACATAATGCTACTGTTTGAAAAATAATTGCTTGTCTATGAGCAAAGTTACAGACGAAACAAAAAACTGACAGATTCCGACCCGGGCCAGCCACTTTAGGGCTTATAACATTGATCATTGACATTGACAAAGTACAGTTTCTCAAATAATACCATTTTGTAGTTAAGCTGTATAGTGGCTGATGTAGTTGATCCAAAAATATTTTGTTCTTGAAGAAAATATGATAGGGCTATACTTTAAAATTTCAGGTATACTGTCACATTGAC</canonical_amplicon>
		<polymorphic_amplicon>TGAGTCTTTTAAAATTTGCATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAATRAACCTGGTTTTCACACTTGTGAACCGCCGTAGTTTCTTTTAAAACCAAAATCTTTGGACCAACTAAATCAGATATCATATAACTCGATGAGCACTACATAATGCTACTGTTTGAAAAATAATTGCTTGTCTATGAGCAAAGTTACAGACGAAACAAAAAACTGACAGATTCCGACCCGGGCCAGCCACTTTAGGGCTTATAACATTGATCATTGACATTGACAAAGTACAGTTTCTCAAATAATACCATTTTGTAGTTAAGCTGTATAGTGGCTGATGTAGTTGATCCAAAAATATTTTGTTCTTGAAGAAAATATGATAGGGCTATACTTTAAAATTTCAGGTATACTGTCACATTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10690</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>414696</contig_pos>
        <strand>+</strand>
        <context>CGAGAAAGAA[G/T]RAACCTGGWT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAATTTGCATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAA</left_flank>
        <right_flank>GAACCTGGTTTTCACACTTGTGAACCGCCGTAGTTTCTTTTAAAACCAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGATTCATAAGTGGTCAAAATCTTTTTTTCACATCTCTCAAATTTCTCTTTATTTTCTCTTCTGATGTGTGAAATGACGTGACGGTGTTCACACTTTTCAATACCCTTTGATTTACGACTTCTAACTTATGCCGCATAACTTTTTTTTTATTGAGCTGTTAAAAATATTTTAACTTTTAGCAAAATGGCAGAGTCTCCACCTCGGGTGGACTCGTCAGCTCCAGACGTCGGGGATCCGACGTCAATGATGGAGAGACTTCGTTTAGGGGATGACGGAGGAAAGGATGATGGTATGTGTTGAAAGTTATGAAATTGAAAAAAAAAATTAAAAAATTAAGAATTTGACAATAAGTCAGTTTCTTCTGCTCAATACTCTCAAGCATCAGAGGCAACGACAGCTGTCAAACAACAACCGTTTTTGCATACGATGACCAAAGTGAGTCTTTTAAAATTTGCATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAATGAACCTGGTTTTCACACTTGTGAACCGCCGTAGTTTCTTTTAAAACCAAAATCTTTGGACCAACTAAATCAGATATCATATAACTCGATGAGCACTACATAATGCTACTGTTTGAAAAATAATTGCTTGTCTATGAGCAAAGTTACAGACGAAACAAAAAACTGACAGATTCCGACCCGGGCCAGCCACTTTAGGGCTTATAACATTGATCATTGACATTGACAAAGTACAGTTTCTCAAATAATACCATTTTGTAGTTAAGCTGTATAGTGGCTGATGTAGTTGATCCAAAAATATTTTGTTCTTGAAGAAAATATGATAGGGCTATACTTTAAAATTTCAGGTATACTGTCACATTGACGACGAAACAGATCCCTACATGCTCGAAGTGCACGTACCACCGGATCTTATCACTTTGGGAGATTTGAAACGAGTATTAATGAGAACAAACTTTAAATACTACAGAAAAGCATTGGATCCGGACTCTGGATAGTGAGTTT</canonical>
            <polymorphic>AGTGATTCATAAGTGGTCAAAATCTTTTTTTCACATCTCTCAAATTTCTCTTTATTTTCTCTTCTGATGTGTGAAATGACGTGACGGTGTTCACACTTTTCAATACCCTTTGATTTACGACTTCTAACTTATGCCGCATAACTTTTTTTTTATTGAGCTGTTAAAAATATTTTAACTTTTAGCAAAATGGCAGAGTCTCCACCTCGGGTGGACTCGTCAGCTCCAGACGTCGGGGATCCGACGTCAATGATGGAGAGACTTCGTTTAGGGGATGACGGAGGAAAGGATGATGGTATGTGTTGAAAGTTATGAAATTGAAAAAAAAAATTAAAAAATTAAGAATTTGACAATAAGTCAGTTTCTTCTGCTCAATACTCTCAAGCATCAGAGGCAACGACAGCTGTCAAACAACAACCGTTTTTGCATACGATGACCAAAGTGAGTCTTTTAAAATTTGCATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAAKGAACCTGGTTTTCACACTTGTGAACCGCCGTAGTTTCTTTTAAAACCAAAATCTTTGGACCAACTAAATCAGATATCATATAACTCGATGAGCACTACATAATGCTACTGTTTGAAAAATAATTGCTTGTCTATGAGCAAAGTTACAGACGAAACAAAAAACTGACAGATTCCGACCCGGGCCAGCCACTTTAGGGCTTATAACATTGATCATTGACATTGACAAAGTACAGTTTCTCAAATAATACCATTTTGTAGTTAAGCTGTATAGTGGCTGATGTAGTTGATCCAAAAATATTTTGTTCTTGAAGAAAATATGATAGGGCTATACTTTAAAATTTCAGGTATACTGTCACATTGACGACGAAACAGATCCCTACATGCTCGAAGTGCACGTACCACCGGATCTTATCACTTTGGGAGATTTGAAACGAGTATTAATGAGAACAAACTTTAAATACTACAGAAAAGCATTGGATCCGGACTCTGGATAGTGAGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGTCTTTTAAAATTTGCATTTA</pcr_primer_p1>
		<pcr_primer_p2>GTCAATGTGACAGTATACCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>422</pcr_amplicon_size>
		<canonical_amplicon>TGAGTCTTTTAAAATTTGCATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAATGAACCTGGTTTTCACACTTGTGAACCGCCGTAGTTTCTTTTAAAACCAAAATCTTTGGACCAACTAAATCAGATATCATATAACTCGATGAGCACTACATAATGCTACTGTTTGAAAAATAATTGCTTGTCTATGAGCAAAGTTACAGACGAAACAAAAAACTGACAGATTCCGACCCGGGCCAGCCACTTTAGGGCTTATAACATTGATCATTGACATTGACAAAGTACAGTTTCTCAAATAATACCATTTTGTAGTTAAGCTGTATAGTGGCTGATGTAGTTGATCCAAAAATATTTTGTTCTTGAAGAAAATATGATAGGGCTATACTTTAAAATTTCAGGTATACTGTCACATTGAC</canonical_amplicon>
		<polymorphic_amplicon>TGAGTCTTTTAAAATTTGCATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAAKGAACCTGGTTTTCACACTTGTGAACCGCCGTAGTTTCTTTTAAAACCAAAATCTTTGGACCAACTAAATCAGATATCATATAACTCGATGAGCACTACATAATGCTACTGTTTGAAAAATAATTGCTTGTCTATGAGCAAAGTTACAGACGAAACAAAAAACTGACAGATTCCGACCCGGGCCAGCCACTTTAGGGCTTATAACATTGATCATTGACATTGACAAAGTACAGTTTCTCAAATAATACCATTTTGTAGTTAAGCTGTATAGTGGCTGATGTAGTTGATCCAAAAATATTTTGTTCTTGAAGAAAATATGATAGGGCTATACTTTAAAATTTCAGGTATACTGTCACATTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10691</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>414613</contig_pos>
        <strand>+</strand>
        <context>AACAACAACC[A/G]TTTTTGCATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTCAATACTCTCAAGCATCAGAGGCAACGACAGCTGTCAAACAACAACC</left_flank>
        <right_flank>TTTTTGCATACGATGACCAAAGTGAGTCTTTTAAAATTTGCATTTAAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTACCATCCAAAGCGTGTGTAAAGTTTACAGTACCCCCAAAATTTCAAATAGAACGAACAAAAATTGGTGGAATAGTTTAGAAGTGATTCATAAGTGGTCAAAATCTTTTTTTCACATCTCTCAAATTTCTCTTTATTTTCTCTTCTGATGTGTGAAATGACGTGACGGTGTTCACACTTTTCAATACCCTTTGATTTACGACTTCTAACTTATGCCGCATAACTTTTTTTTTATTGAGCTGTTAAAAATATTTTAACTTTTAGCAAAATGGCAGAGTCTCCACCTCGGGTGGACTCGTCAGCTCCAGACGTCGGGGATCCGACGTCAATGATGGAGAGACTTCGTTTAGGGGATGACGGAGGAAAGGATGATGGTATGTGTTGAAAGTTATGAAATTGAAAAAAAAAATTAAAAAATTAAGAATTTGACAATAAGTCAGTTTCTTCTGCTCAATACTCTCAAGCATCAGAGGCAACGACAGCTGTCAAACAACAACCGTTTTTGCATACGATGACCAAAGTGAGTCTTTTAAAATTTGCATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAATGAACCTGGTTTTCACACTTGTGAACCGCCGTAGTTTCTTTTAAAACCAAAATCTTTGGACCAACTAAATCAGATATCATATAACTCGATGAGCACTACATAATGCTACTGTTTGAAAAATAATTGCTTGTCTATGAGCAAAGTTACAGACGAAACAAAAAACTGACAGATTCCGACCCGGGCCAGCCACTTTAGGGCTTATAACATTGATCATTGACATTGACAAAGTACAGTTTCTCAAATAATACCATTTTGTAGTTAAGCTGTATAGTGGCTGATGTAGTTGATCCAAAAATATTTTGTTCTTGAAGAAAATATGATAGGGCTATACTTTAAAATTTCAGGTATACTGTCACATTGACGACGAAACAGATCCCTACATGCTCGAAGTGCACGTACCACCGGATCTTATCACTTT</canonical>
            <polymorphic>ATTACCATCCAAAGCGTGTGTAAAGTTTACAGTACCCCCAAAATTTCAAATAGAACGAACAAAAATTGGTGGAATAGTTTAGAAGTGATTCATAAGTGGTCAAAATCTTTTTTTCACATCTCTCAAATTTCTCTTTATTTTCTCTTCTGATGTGTGAAATGACGTGACGGTGTTCACACTTTTCAATACCCTTTGATTTACGACTTCTAACTTATGCCGCATAACTTTTTTTTTATTGAGCTGTTAAAAATATTTTAACTTTTAGCAAAATGGCAGAGTCTCCACCTCGGGTGGACTCGTCAGCTCCAGACGTCGGGGATCCGACGTCAATGATGGAGAGACTTCGTTTAGGGGATGACGGAGGAAAGGATGATGGTATGTGTTGAAAGTTATGAAATTGAAAAAAAAAATTAAAAAATTAAGAATTTGACAATAAGTCAGTTTCTTCTGCTCAATACTCTCAAGCATCAGAGGCAACGACAGCTGTCAAACAACAACCRTTTTTGCATACGATGACCAAAGTGAGTCTTTTAAAATTTGCATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAATGAACCTGGTTTTCACACTTGTGAACCGCCGTAGTTTCTTTTAAAACCAAAATCTTTGGACCAACTAAATCAGATATCATATAACTCGATGAGCACTACATAATGCTACTGTTTGAAAAATAATTGCTTGTCTATGAGCAAAGTTACAGACGAAACAAAAAACTGACAGATTCCGACCCGGGCCAGCCACTTTAGGGCTTATAACATTGATCATTGACATTGACAAAGTACAGTTTCTCAAATAATACCATTTTGTAGTTAAGCTGTATAGTGGCTGATGTAGTTGATCCAAAAATATTTTGTTCTTGAAGAAAATATGATAGGGCTATACTTTAAAATTTCAGGTATACTGTCACATTGACGACGAAACAGATCCCTACATGCTCGAAGTGCACGTACCACCGGATCTTATCACTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>330 193 138 122 119 67 31</canonical_bands>
                <polymorphic_bands>523 138 122 119 67 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTCAATACTCTCAAGCATCA</pcr_primer_p1>
		<pcr_primer_p2>GTCAATGTGACAGTATACCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>495</pcr_amplicon_size>
		<canonical_amplicon>GCTCAATACTCTCAAGCATCAGAGGCAACGACAGCTGTCAAACAACAACCGTTTTTGCATACGATGACCAAAGTGAGTCTTTTAAAATTTGCATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAATGAACCTGGTTTTCACACTTGTGAACCGCCGTAGTTTCTTTTAAAACCAAAATCTTTGGACCAACTAAATCAGATATCATATAACTCGATGAGCACTACATAATGCTACTGTTTGAAAAATAATTGCTTGTCTATGAGCAAAGTTACAGACGAAACAAAAAACTGACAGATTCCGACCCGGGCCAGCCACTTTAGGGCTTATAACATTGATCATTGACATTGACAAAGTACAGTTTCTCAAATAATACCATTTTGTAGTTAAGCTGTATAGTGGCTGATGTAGTTGATCCAAAAATATTTTGTTCTTGAAGAAAATATGATAGGGCTATACTTTAAAATTTCAGGTATACTGTCACATTGAC</canonical_amplicon>
		<polymorphic_amplicon>GCTCAATACTCTCAAGCATCAGAGGCAACGACAGCTGTCAAACAACAACCRTTTTTGCATACGATGACCAAAGTGAGTCTTTTAAAATTTGCATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAATGAACCTGGTTTTCACACTTGTGAACCGCCGTAGTTTCTTTTAAAACCAAAATCTTTGGACCAACTAAATCAGATATCATATAACTCGATGAGCACTACATAATGCTACTGTTTGAAAAATAATTGCTTGTCTATGAGCAAAGTTACAGACGAAACAAAAAACTGACAGATTCCGACCCGGGCCAGCCACTTTAGGGCTTATAACATTGATCATTGACATTGACAAAGTACAGTTTCTCAAATAATACCATTTTGTAGTTAAGCTGTATAGTGGCTGATGTAGTTGATCCAAAAATATTTTGTTCTTGAAGAAAATATGATAGGGCTATACTTTAAAATTTCAGGTATACTGTCACATTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10692</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>414556</contig_pos>
        <strand></strand>
        <context>ATAAGTCAGT[T/C]TCTTCTGCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGAAATTGAAAAAAAAAATTAAAAAATTAAGAATTTGACAATAAGTCAGT</left_flank>
        <right_flank>TCTTCTGCTCAATACTCTCAAGCATCAGAGGCAACGACAGCTGTCAAACA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCCAACAATTCTTTGTACAATTCTACCAAAGTCACTTACATGACACATTCTAATAGATTACCATCCAAAGCGTGTGTAAAGTTTACAGTACCCCCAAAATTTCAAATAGAACGAACAAAAATTGGTGGAATAGTTTAGAAGTGATTCATAAGTGGTCAAAATCTTTTTTTCACATCTCTCAAATTTCTCTTTATTTTCTCTTCTGATGTGTGAAATGACGTGACGGTGTTCACACTTTTCAATACCCTTTGATTTACGACTTCTAACTTATGCCGCATAACTTTTTTTTTATTGAGCTGTTAAAAATATTTTAACTTTTAGCAAAATGGCAGAGTCTCCACCTCGGGTGGACTCGTCAGCTCCAGACGTCGGGGATCCGACGTCAATGATGGAGAGACTTCGTTTAGGGGATGACGGAGGAAAGGATGATGGTATGTGTTGAAAGTTATGAAATTGAAAAAAAAAATTAAAAAATTAAGAATTTGACAATAAGTCAGTTTCTTCTGCTCAATACTCTCAAGCATCAGAGGCAACGACAGCTGTCAAACAACAACCGTTTTTGCATACGATGACCAAAGTGAGTCTTTTAAAATTTGCATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAATGAACCTGGTTTTCACACTTGTGAACCGCCGTAGTTTCTTTTAAAACCAAAATCTTTGGACCAACTAAATCAGATATCATATAACTCGATGAGCACTACATAATGCTACTGTTTGAAAAATAATTGCTTGTCTATGAGCAAAGTTACAGACGAAACAAAAAACTGACAGATTCCGACCCGGGCCAGCCACTTTAGGGCTTATAACATTGATCATTGACATTGACAAAGTACAGTTTCTCAAATAATACCATTTTGTAGTTAAGCTGTATAGTGGCTGATGTAGTTGATCCAAAAATATTTTGTTCTTGAAGAAAATATGATAGGGCTATACTTTAAAATTTCAGGTATACTGTCACATTGA</canonical>
            <polymorphic>CCCCAACAATTCTTTGTACAATTCTACCAAAGTCACTTACATGACACATTCTAATAGATTACCATCCAAAGCGTGTGTAAAGTTTACAGTACCCCCAAAATTTCAAATAGAACGAACAAAAATTGGTGGAATAGTTTAGAAGTGATTCATAAGTGGTCAAAATCTTTTTTTCACATCTCTCAAATTTCTCTTTATTTTCTCTTCTGATGTGTGAAATGACGTGACGGTGTTCACACTTTTCAATACCCTTTGATTTACGACTTCTAACTTATGCCGCATAACTTTTTTTTTATTGAGCTGTTAAAAATATTTTAACTTTTAGCAAAATGGCAGAGTCTCCACCTCGGGTGGACTCGTCAGCTCCAGACGTCGGGGATCCGACGTCAATGATGGAGAGACTTCGTTTAGGGGATGACGGAGGAAAGGATGATGGTATGTGTTGAAAGTTATGAAATTGAAAAAAAAAATTAAAAAATTAAGAATTTGACAATAAGTCAGTYTCTTCTGCTCAATACTCTCAAGCATCAGAGGCAACGACAGCTGTCAAACAACAACCGTTTTTGCATACGATGACCAAAGTGAGTCTTTTAAAATTTGCATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAATGAACCTGGTTTTCACACTTGTGAACCGCCGTAGTTTCTTTTAAAACCAAAATCTTTGGACCAACTAAATCAGATATCATATAACTCGATGAGCACTACATAATGCTACTGTTTGAAAAATAATTGCTTGTCTATGAGCAAAGTTACAGACGAAACAAAAAACTGACAGATTCCGACCCGGGCCAGCCACTTTAGGGCTTATAACATTGATCATTGACATTGACAAAGTACAGTTTCTCAAATAATACCATTTTGTAGTTAAGCTGTATAGTGGCTGATGTAGTTGATCCAAAAATATTTTGTTCTTGAAGAAAATATGATAGGGCTATACTTTAAAATTTCAGGTATACTGTCACATTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATGGAGAGACTTCGTTTAG</pcr_primer_p1>
		<pcr_primer_p2>TGCAAATTTTAAAAGACTCACTT</pcr_primer_p2>
		<pcr_amplicon_size>213</pcr_amplicon_size>
		<canonical_amplicon>ATGATGGAGAGACTTCGTTTAGGGGATGACGGAGGAAAGGATGATGGTATGTGTTGAAAGTTATGAAATTGAAAAAAAAAATTAAAAAATTAAGAATTTGACAATAAGTCAGTTTCTTCTGCTCAATACTCTCAAGCATCAGAGGCAACGACAGCTGTCAAACAACAACCGTTTTTGCATACGATGACCAAAGTGAGTCTTTTAAAATTTGCA</canonical_amplicon>
		<polymorphic_amplicon>ATGATGGAGAGACTTCGTTTAGGGGATGACGGAGGAAAGGATGATGGTATGTGTTGAAAGTTATGAAATTGAAAAAAAAAATTAAAAAATTAAGAATTTGACAATAAGTCAGTYTCTTCTGCTCAATACTCTCAAGCATCAGAGGCAACGACAGCTGTCAAACAACAACCGTTTTTGCATACGATGACCAAAGTGAGTCTTTTAAAATTTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10714</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>414514</contig_pos>
        <strand>+</strand>
        <context>TATGAAATTG[C/T]aaaaaaaaat</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGGATGACGGAGGAAAGGATGATGGTATGTGTTGAAAGTTATGAAATTG</left_flank>
        <right_flank>AAAAAAAAATTAAAAAATTAAGAATTTGACAATAAGTCAGTTTCTTCTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTTCTTTCTATTACACACAAGAGTTTTCACTTTTTGTTAGCCCCAACAATTCTTTGTACAATTCTACCAAAGTCACTTACATGACACATTCTAATAGATTACCATCCAAAGCGTGTGTAAAGTTTACAGTACCCCCAAAATTTCAAATAGAACGAACAAAAATTGGTGGAATAGTTTAGAAGTGATTCATAAGTGGTCAAAATCTTTTTTTCACATCTCTCAAATTTCTCTTTATTTTCTCTTCTGATGTGTGAAATGACGTGACGGTGTTCACACTTTTCAATACCCTTTGATTTACGACTTCTAACTTATGCCGCATAACTTTTTTTTTATTGAGCTGTTAAAAATATTTTAACTTTTAGCAAAATGGCAGAGTCTCCACCTCGGGTGGACTCGTCAGCTCCAGACGTCGGGGATCCGACGTCAATGATGGAGAGACTTCGTTTAGGGGATGACGGAGGAAAGGATGATGGTATGTGTTGAAAGTTATGAAATTGAAAAAAAAAATTAAAAAATTAAGAATTTGACAATAAGTCAGTTTCTTCTGCTCAATACTCTCAAGCATCAGAGGCAACGACAGCTGTCAAACAACAACCGTTTTTGCATACGATGACCAAAGTGAGTCTTTTAAAATTTGCATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAATGAACCTGGTTTTCACACTTGTGAACCGCCGTAGTTTCTTTTAAAACCAAAATCTTTGGACCAACTAAATCAGATATCATATAACTCGATGAGCACTACATAATGCTACTGTTTGAAAAATAATTGCTTGTCTATGAGCAAAGTTACAGACGAAACAAAAAACTGACAGATTCCGACCCGGGCCAGCCACTTTAGGGCTTATAACATTGATCATTGACATTGACAAAGTACAGTTTCTCAAATAATACCATTTTGTAGTTAAGCTGTATAGTGGCTGATGTAGTTGATCCAAAAATATTTTGTTCTTGAAGAAAATATG</canonical>
            <polymorphic>TACTTCTTTCTATTACACACAAGAGTTTTCACTTTTTGTTAGCCCCAACAATTCTTTGTACAATTCTACCAAAGTCACTTACATGACACATTCTAATAGATTACCATCCAAAGCGTGTGTAAAGTTTACAGTACCCCCAAAATTTCAAATAGAACGAACAAAAATTGGTGGAATAGTTTAGAAGTGATTCATAAGTGGTCAAAATCTTTTTTTCACATCTCTCAAATTTCTCTTTATTTTCTCTTCTGATGTGTGAAATGACGTGACGGTGTTCACACTTTTCAATACCCTTTGATTTACGACTTCTAACTTATGCCGCATAACTTTTTTTTTATTGAGCTGTTAAAAATATTTTAACTTTTAGCAAAATGGCAGAGTCTCCACCTCGGGTGGACTCGTCAGCTCCAGACGTCGGGGATCCGACGTCAATGATGGAGAGACTTCGTTTAGGGGATGACGGAGGAAAGGATGATGGTATGTGTTGAAAGTTATGAAATTGYAAAAAAAAATTAAAAAATTAAGAATTTGACAATAAGTCAGTTTCTTCTGCTCAATACTCTCAAGCATCAGAGGCAACGACAGCTGTCAAACAACAACCGTTTTTGCATACGATGACCAAAGTGAGTCTTTTAAAATTTGCATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAATGAACCTGGTTTTCACACTTGTGAACCGCCGTAGTTTCTTTTAAAACCAAAATCTTTGGACCAACTAAATCAGATATCATATAACTCGATGAGCACTACATAATGCTACTGTTTGAAAAATAATTGCTTGTCTATGAGCAAAGTTACAGACGAAACAAAAAACTGACAGATTCCGACCCGGGCCAGCCACTTTAGGGCTTATAACATTGATCATTGACATTGACAAAGTACAGTTTCTCAAATAATACCATTTTGTAGTTAAGCTGTATAGTGGCTGATGTAGTTGATCCAAAAATATTTTGTTCTTGAAGAAAATATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATGGAGAGACTTCGTTTAG</pcr_primer_p1>
		<pcr_primer_p2>TGCAAATTTTAAAAGACTCACTT</pcr_primer_p2>
		<pcr_amplicon_size>213</pcr_amplicon_size>
		<canonical_amplicon>ATGATGGAGAGACTTCGTTTAGGGGATGACGGAGGAAAGGATGATGGTATGTGTTGAAAGTTATGAAATTGAAAAAAAAAATTAAAAAATTAAGAATTTGACAATAAGTCAGTTTCTTCTGCTCAATACTCTCAAGCATCAGAGGCAACGACAGCTGTCAAACAACAACCGTTTTTGCATACGATGACCAAAGTGAGTCTTTTAAAATTTGCA</canonical_amplicon>
		<polymorphic_amplicon>ATGATGGAGAGACTTCGTTTAGGGGATGACGGAGGAAAGGATGATGGTATGTGTTGAAAGTTATGAAATTGYAAAAAAAAATTAAAAAATTAAGAATTTGACAATAAGTCAGTTTCTTCTGCTCAATACTCTCAAGCATCAGAGGCAACGACAGCTGTCAAACAACAACCGTTTTTGCATACGATGACCAAAGTGAGTCTTTTAAAATTTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10715</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>415468</contig_pos>
        <strand>+</strand>
        <context>TTTTTAAATT[A/T]AAAAAAAGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATCAACATGCTGCTTATCAATTTGATAATTCTAGTGAGTTTTTTAAATT</left_flank>
        <right_flank>AAAAAAAGCTGTGTGTCTATCAAAAAAAAACTTAACCATGAAGCATTTGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTGATGTAGTTGATCCAAAAATATTTTGTTCTTGAAGAAAATATGATAGGGCTATACTTTAAAATTTCAGGTATACTGTCACATTGACGACGAAACAGATCCCTACATGCTCGAAGTGCACGTACCACCGGATCTTATCACTTTGGGAGATTTGAAACGAGTATTAATGAGAACAAACTTTAAATACTACAGAAAAGCATTGGATCCGGACTCTGGATAGTGAGTTTTCGACTTGAAACAACAAAGAATCTAAAAAAAATTCAGTGAAGTGAAAGCTGAAATTCGAGATGATTCTCAACGACTAACGCCTTCTTCGAATAATCTGTTTGAACTATTTTTATTAACAATCGAAGGATCAACTCATTCGGATGGAAGCAGTGGGAAAATGAGAAAATATCCATCAGTACCAGGACCAGCACCATCCAATAGAAGTGGACCACCAATGAATTATCAACATGCTGCTTATCAATTTGATAATTCTAGTGAGTTTTTTAAATTTAAAAAAAGCTGTGTGTCTATCAAAAAAAAACTTAACCATGAAGCATTTGATTTGAAGAGCTCCAACTAAAGATTTTTTGAACGAAATTTTTGAAACAGCTGAATCCCAATACCGTATTTGCTTTAATAGAAGCCTGCCCTACATGGACACTTTGATCAATTATCTCGTTTCTTATGAGAGATATCAAAAATTTGTCAACTGATAAAATATTGGTAACATTATGATAAATAATTTATCAGTTGACCGCATTTTGATATCTCTCATAAGAACCGAGATAATTGAGCTCAAATTGCACGTATTGGGTGGGCTTCTATCAGAGCAAATTGTACTTCTTTTTTTTTACCATGAGAGACTTCAGCTTGGTTATCACCGAAGTCTAGAAAATGGAAAACCACATTTTCATAAATTTCACAAACTGACAGAAATCAAATTTTACAAAAAATAGCGATAAACAGAGAACGCAAGAGCTTCATAGCACCAAAAAAAGCGCTAGGGGAGGT</canonical>
            <polymorphic>GCTGATGTAGTTGATCCAAAAATATTTTGTTCTTGAAGAAAATATGATAGGGCTATACTTTAAAATTTCAGGTATACTGTCACATTGACGACGAAACAGATCCCTACATGCTCGAAGTGCACGTACCACCGGATCTTATCACTTTGGGAGATTTGAAACGAGTATTAATGAGAACAAACTTTAAATACTACAGAAAAGCATTGGATCCGGACTCTGGATAGTGAGTTTTCGACTTGAAACAACAAAGAATCTAAAAAAAATTCAGTGAAGTGAAAGCTGAAATTCGAGATGATTCTCAACGACTAACGCCTTCTTCGAATAATCTGTTTGAACTATTTTTATTAACAATCGAAGGATCAACTCATTCGGATGGAAGCAGTGGGAAAATGAGAAAATATCCATCAGTACCAGGACCAGCACCATCCAATAGAAGTGGACCACCAATGAATTATCAACATGCTGCTTATCAATTTGATAATTCTAGTGAGTTTTTTAAATTWAAAAAAAGCTGTGTGTCTATCAAAAAAAAACTTAACCATGAAGCATTTGATTTGAAGAGCTCCAACTAAAGATTTTTTGAACGAAATTTTTGAAACAGCTGAATCCCAATACCGTATTTGCTTTAATAGAAGCCTGCCCTACATGGACACTTTGATCAATTATCTCGTTTCTTATGAGAGATATCAAAAATTTGTCAACTGATAAAATATTGGTAACATTATGATAAATAATTTATCAGTTGACCGCATTTTGATATCTCTCATAAGAACCGAGATAATTGAGCTCAAATTGCACGTATTGGGTGGGCTTCTATCAGAGCAAATTGTACTTCTTTTTTTTTACCATGAGAGACTTCAGCTTGGTTATCACCGAAGTCTAGAAAATGGAAAACCACATTTTCATAAATTTCACAAACTGACAGAAATCAAATTTTACAAAAAATAGCGATAAACAGAGAACGCAAGAGCTTCATAGCACCAAAAAAAGCGCTAGGGGAGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>216 215 195 104 89 72 63 24 22</canonical_bands>
                <polymorphic_bands>304 216 195 104 72 63 24 22</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 312 121 61 6</canonical_bands>
                <polymorphic_bands>506 312 121 61</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>377 161 151 105 91 60 33 16 6</canonical_bands>
                <polymorphic_bands>377 161 151 105 91 60 39 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTATTAACAATCGAAGGATCA</pcr_primer_p1>
		<pcr_primer_p2>AAAATCTTTAGTTGGAGCTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TTTTATTAACAATCGAAGGATCAACTCATTCGGATGGAAGCAGTGGGAAAATGAGAAAATATCCATCAGTACCAGGACCAGCACCATCCAATAGAAGTGGACCACCAATGAATTATCAACATGCTGCTTATCAATTTGATAATTCTAGTGAGTTTTTTAAATTTAAAAAAAGCTGTGTGTCTATCAAAAAAAAACTTAACCATGAAGCATTTGATTTGAAGAGCTCCAACTAAAGATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTATTAACAATCGAAGGATCAACTCATTCGGATGGAAGCAGTGGGAAAATGAGAAAATATCCATCAGTACCAGGACCAGCACCATCCAATAGAAGTGGACCACCAATGAATTATCAACATGCTGCTTATCAATTTGATAATTCTAGTGAGTTTTTTAAATTWAAAAAAAGCTGTGTGTCTATCAAAAAAAAACTTAACCATGAAGCATTTGATTTGAAGAGCTCCAACTAAAGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10716</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>415565</contig_pos>
        <strand>+</strand>
        <context>TTTTTGAAAC[A/T]GCTGAATCCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGATTTGAAGAGCTCCAACTAAAGATTTTTTGAACGAAATTTTTGAAAC</left_flank>
        <right_flank>GCTGAATCCCAATACCGTATTTGCTTTAATAGAAGCCTGCCCTACATGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATCCCTACATGCTCGAAGTGCACGTACCACCGGATCTTATCACTTTGGGAGATTTGAAACGAGTATTAATGAGAACAAACTTTAAATACTACAGAAAAGCATTGGATCCGGACTCTGGATAGTGAGTTTTCGACTTGAAACAACAAAGAATCTAAAAAAAATTCAGTGAAGTGAAAGCTGAAATTCGAGATGATTCTCAACGACTAACGCCTTCTTCGAATAATCTGTTTGAACTATTTTTATTAACAATCGAAGGATCAACTCATTCGGATGGAAGCAGTGGGAAAATGAGAAAATATCCATCAGTACCAGGACCAGCACCATCCAATAGAAGTGGACCACCAATGAATTATCAACATGCTGCTTATCAATTTGATAATTCTAGTGAGTTTTTTAAATTTAAAAAAAGCTGTGTGTCTATCAAAAAAAAACTTAACCATGAAGCATTTGATTTGAAGAGCTCCAACTAAAGATTTTTTGAACGAAATTTTTGAAACAGCTGAATCCCAATACCGTATTTGCTTTAATAGAAGCCTGCCCTACATGGACACTTTGATCAATTATCTCGTTTCTTATGAGAGATATCAAAAATTTGTCAACTGATAAAATATTGGTAACATTATGATAAATAATTTATCAGTTGACCGCATTTTGATATCTCTCATAAGAACCGAGATAATTGAGCTCAAATTGCACGTATTGGGTGGGCTTCTATCAGAGCAAATTGTACTTCTTTTTTTTTACCATGAGAGACTTCAGCTTGGTTATCACCGAAGTCTAGAAAATGGAAAACCACATTTTCATAAATTTCACAAACTGACAGAAATCAAATTTTACAAAAAATAGCGATAAACAGAGAACGCAAGAGCTTCATAGCACCAAAAAAAGCGCTAGGGGAGGTTATCTAGGAATAGGAAAATTTTACGAAAAAATTTTTTTCAAAAATACCGACAATGTTAAAAAAACAAGAAATAACTGAGAAACCTGGAAAAATTACT</canonical>
            <polymorphic>AGATCCCTACATGCTCGAAGTGCACGTACCACCGGATCTTATCACTTTGGGAGATTTGAAACGAGTATTAATGAGAACAAACTTTAAATACTACAGAAAAGCATTGGATCCGGACTCTGGATAGTGAGTTTTCGACTTGAAACAACAAAGAATCTAAAAAAAATTCAGTGAAGTGAAAGCTGAAATTCGAGATGATTCTCAACGACTAACGCCTTCTTCGAATAATCTGTTTGAACTATTTTTATTAACAATCGAAGGATCAACTCATTCGGATGGAAGCAGTGGGAAAATGAGAAAATATCCATCAGTACCAGGACCAGCACCATCCAATAGAAGTGGACCACCAATGAATTATCAACATGCTGCTTATCAATTTGATAATTCTAGTGAGTTTTTTAAATTTAAAAAAAGCTGTGTGTCTATCAAAAAAAAACTTAACCATGAAGCATTTGATTTGAAGAGCTCCAACTAAAGATTTTTTGAACGAAATTTTTGAAACWGCTGAATCCCAATACCGTATTTGCTTTAATAGAAGCCTGCCCTACATGGACACTTTGATCAATTATCTCGTTTCTTATGAGAGATATCAAAAATTTGTCAACTGATAAAATATTGGTAACATTATGATAAATAATTTATCAGTTGACCGCATTTTGATATCTCTCATAAGAACCGAGATAATTGAGCTCAAATTGCACGTATTGGGTGGGCTTCTATCAGAGCAAATTGTACTTCTTTTTTTTTACCATGAGAGACTTCAGCTTGGTTATCACCGAAGTCTAGAAAATGGAAAACCACATTTTCATAAATTTCACAAACTGACAGAAATCAAATTTTACAAAAAATAGCGATAAACAGAGAACGCAAGAGCTTCATAGCACCAAAAAAAGCGCTAGGGGAGGTTATCTAGGAATAGGAAAATTTTACGAAAAAATTTTTTTCAAAAATACCGACAATGTTAAAAAAACAAGAAATAACTGAGAAACCTGGAAAAATTACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>232 185 179 130 109 75 51 39</canonical_bands>
                <polymorphic_bands>232 224 179 130 109 75 51</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>232 179 151 130 109 51 51 39 34 24</canonical_bands>
                <polymorphic_bands>232 179 151 130 109 73 51 51 24</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAGCATTTGATTTGAAGAG</pcr_primer_p1>
		<pcr_primer_p2>GCTGAAGTCTCTCATGGTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>TGAAGCATTTGATTTGAAGAGCTCCAACTAAAGATTTTTTGAACGAAATTTTTGAAACAGCTGAATCCCAATACCGTATTTGCTTTAATAGAAGCCTGCCCTACATGGACACTTTGATCAATTATCTCGTTTCTTATGAGAGATATCAAAAATTTGTCAACTGATAAAATATTGGTAACATTATGATAAATAATTTATCAGTTGACCGCATTTTGATATCTCTCATAAGAACCGAGATAATTGAGCTCAAATTGCACGTATTGGGTGGGCTTCTATCAGAGCAAATTGTACTTCTTTTTTTTTACCATGAGAGACTTCAGC</canonical_amplicon>
		<polymorphic_amplicon>TGAAGCATTTGATTTGAAGAGCTCCAACTAAAGATTTTTTGAACGAAATTTTTGAAACWGCTGAATCCCAATACCGTATTTGCTTTAATAGAAGCCTGCCCTACATGGACACTTTGATCAATTATCTCGTTTCTTATGAGAGATATCAAAAATTTGTCAACTGATAAAATATTGGTAACATTATGATAAATAATTTATCAGTTGACCGCATTTTGATATCTCTCATAAGAACCGAGATAATTGAGCTCAAATTGCACGTATTGGGTGGGCTTCTATCAGAGCAAATTGTACTTCTTTTTTTTTACCATGAGAGACTTCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10717</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>419036</contig_pos>
        <strand>+</strand>
        <context>TATCTGTTTT[A/C]CCAGTTTTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTGAGCTTTTCGATATTAGGTCATCCTTAACATCTTTTTATCTGTTTT</left_flank>
        <right_flank>CCAGTTTTCCATGGCTACTGAACACCAACAAATTAGATTCATTTCCTTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAGAGAGCTCATGTATCAATCTAGATCAATTTTGCAACATTCGTTCATTTTTTTTGAACTATTTCTATTCTTTTTTTGTTGATAAACAAGTCGTTAATTTCTATAGAGAAACCTGAAGTAATAGTATTGATTTGACCATCACCCAATTTGTTTTGTTTTTTATATTTTCAGTGATGTTTGAGCCTTAAATTGTGAGATGTTTATATAAATAACGGGACCACTTGAACTTCTTCTATGAAAAATTTGAAAACTAACAAATAACTTGGAATAGAGTTTTCATAATCATCTAAAACCCTTTTGAGTCCCTAGTAGTTTCAAAGTTTTGGATAATTCACAACGATGCAGAATAGAGTCTTCATGAGAAAAAAGTTTGCTAAGTGGGAAACTCTCTTTGAAGTACCCGCCACGTCACTTCAAGACCTGTGGGGATAAAACAAGGTTTCGGATTTTTGAGCTTTTCGATATTAGGTCATCCTTAACATCTTTTTATCTGTTTTCCCAGTTTTCCATGGCTACTGAACACCAACAAATTAGATTCATTTCCTTCAAGACTAGACCAACAACATAGCATACCGTGAAACCTGTAATAAAAGGACCCCTTAACTTTGAACCAATTTATCTCGGTTCCTGTCAATGATAATCCAATTGATAAGTTGTTCATCATAACACCACAAACATTTTATCAATTGACATATTTTTATATCATTTACAGAAATCGAGATACATTGGCTTTAGCGTTCTTCTAAGTTTAAAGCACACAGCTGATCACTAATAAGATTTTGGGTATATTTCAGAATTTTCGAACTTTCGAGAAACAATTTAGTTCAAAAACCATTTTTATAACTCTTCTAGGAGCCGAGATACAGGCTAAGAAGGCTAGAGATGCAGACAACGAGACATTCTGACTGTCTGCGTCTCTTCTAAAAGGTATGTCTCGGATTTTAGTTGAGCTAGATTTCACGGTTTATTTTTCCTACTCCCGCATTTTCCTCGTACCT</canonical>
            <polymorphic>CAGAGAGAGCTCATGTATCAATCTAGATCAATTTTGCAACATTCGTTCATTTTTTTTGAACTATTTCTATTCTTTTTTTGTTGATAAACAAGTCGTTAATTTCTATAGAGAAACCTGAAGTAATAGTATTGATTTGACCATCACCCAATTTGTTTTGTTTTTTATATTTTCAGTGATGTTTGAGCCTTAAATTGTGAGATGTTTATATAAATAACGGGACCACTTGAACTTCTTCTATGAAAAATTTGAAAACTAACAAATAACTTGGAATAGAGTTTTCATAATCATCTAAAACCCTTTTGAGTCCCTAGTAGTTTCAAAGTTTTGGATAATTCACAACGATGCAGAATAGAGTCTTCATGAGAAAAAAGTTTGCTAAGTGGGAAACTCTCTTTGAAGTACCCGCCACGTCACTTCAAGACCTGTGGGGATAAAACAAGGTTTCGGATTTTTGAGCTTTTCGATATTAGGTCATCCTTAACATCTTTTTATCTGTTTTMCCAGTTTTCCATGGCTACTGAACACCAACAAATTAGATTCATTTCCTTCAAGACTAGACCAACAACATAGCATACCGTGAAACCTGTAATAAAAGGACCCCTTAACTTTGAACCAATTTATCTCGGTTCCTGTCAATGATAATCCAATTGATAAGTTGTTCATCATAACACCACAAACATTTTATCAATTGACATATTTTTATATCATTTACAGAAATCGAGATACATTGGCTTTAGCGTTCTTCTAAGTTTAAAGCACACAGCTGATCACTAATAAGATTTTGGGTATATTTCAGAATTTTCGAACTTTCGAGAAACAATTTAGTTCAAAAACCATTTTTATAACTCTTCTAGGAGCCGAGATACAGGCTAAGAAGGCTAGAGATGCAGACAACGAGACATTCTGACTGTCTGCGTCTCTTCTAAAAGGTATGTCTCGGATTTTAGTTGAGCTAGATTTCACGGTTTATTTTTCCTACTCCCGCATTTTCCTCGTACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAAGTTTTGGATAATTCAC</pcr_primer_p1>
		<pcr_primer_p2>GTTGGTCTAGTCTTGAAGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAAGTTTTGGATAATTCACAACGATGCAGAATAGAGTCTTCATGAGAAAAAAGTTTGCTAAGTGGGAAACTCTCTTTGAAGTACCCGCCACGTCACTTCAAGACCTGTGGGGATAAAACAAGGTTTCGGATTTTTGAGCTTTTCGATATTAGGTCATCCTTAACATCTTTTTATCTGTTTTCCCAGTTTTCCATGGCTACTGAACACCAACAAATTAGATTCATTTCCTTCAAGACTAGACCAAC</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAAGTTTTGGATAATTCACAACGATGCAGAATAGAGTCTTCATGAGAAAAAAGTTTGCTAAGTGGGAAACTCTCTTTGAAGTACCCGCCACGTCACTTCAAGACCTGTGGGGATAAAACAAGGTTTCGGATTTTTGAGCTTTTCGATATTAGGTCATCCTTAACATCTTTTTATCTGTTTTMCCAGTTTTCCATGGCTACTGAACACCAACAAATTAGATTCATTTCCTTCAAGACTAGACCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10718</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>495098</contig_pos>
        <strand>+</strand>
        <context>GTCATGTGCT[A/T]GGCGAAATCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCTGGAGAAAATGGAAAAAGTGGAAATCTTTAATTTCGAGTCATGTGCT</left_flank>
        <right_flank>GGCGAAATCTCTGACAACTTGCCTTTCTTAATAGAAATATATAAGACGGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCCTTAGTCTAGAAGCTAATTGCTCATGGGAATATTTTTTGATCTGGGAAAGTTTGAAGTGAAAGTGAGAATTGTGAATAATCAGATCGATTTATCAAAGAAGGGGGGGGGGGGGGACTTTTTGGCTAGATTGTGTGGAGCTTATCTGAACGATATTTAGTTTTTTTCATTTCCTTCTCTCTCAAAAAAAATCAAACTACTTTTATATGAAATTGGTAATCGGAAAGGCTCTCAATTACCCAAAGAAATTGAAAACAGTGAAAACAATTGTATAATTCTTCTTAGAAATATTTAGCCTAAAAAAATTGTCTGAAGTTGATAACCAGTACGTAACATTGAACTAAGTTTCTTTTGAAACCACTTGGGAATACCACCTAATTGTAACAAAATATAGCTCTTCTGCAGAGGAAAGTCGAATACTTGGAAAGTGCACTAAAAAGTGTGTGTTTCTGGAGAAAATGGAAAAAGTGGAAATCTTTAATTTCGAGTCATGTGCTAGGCGAAATCTCTGACAACTTGCCTTTCTTAATAGAAATATATAAGACGGGGCAGTGGCGCCTGTAGCTCCGCGAGCTCGAGTAATTGGATTTTTCAGCCGTTTATCTGAGATTGCAGCTGCACGAACTTTGGCTTATATTGGCAGCTAAATCGAAATGTTTGTGTTTCACATTCGATGTTTTTGAGTCTTAGATTTCTTTAGAAACTAGAGGGTGGAGCTTGTGAAAATTGCACAAAATTGTAGTGTTGAACTTTTGAAATGTTGAATGAGAAGAAGTGGAAAATTGTATTTTAGTTTTTCAAACAAGAAAAGAAGAAGAAACAGAAAAAAACCAGGAAGAAAATGCAAAGAAAATTCAAATTTATTTTAGTCACAATTTTGAAATGTTTGGTTTTGGTTTCAAAGTAGAGGCCCGATGGGAAAATTGAGTGAAATATTTAACAAAAAAAAACAAAAAACAGATCGTATAGTAAAAGACCCGTTTGGCTGAAAGAATTCT</canonical>
            <polymorphic>TTCCCTTAGTCTAGAAGCTAATTGCTCATGGGAATATTTTTTGATCTGGGAAAGTTTGAAGTGAAAGTGAGAATTGTGAATAATCAGATCGATTTATCAAAGAAGGGGGGGGGGGGGGACTTTTTGGCTAGATTGTGTGGAGCTTATCTGAACGATATTTAGTTTTTTTCATTTCCTTCTCTCTCAAAAAAAATCAAACTACTTTTATATGAAATTGGTAATCGGAAAGGCTCTCAATTACCCAAAGAAATTGAAAACAGTGAAAACAATTGTATAATTCTTCTTAGAAATATTTAGCCTAAAAAAATTGTCTGAAGTTGATAACCAGTACGTAACATTGAACTAAGTTTCTTTTGAAACCACTTGGGAATACCACCTAATTGTAACAAAATATAGCTCTTCTGCAGAGGAAAGTCGAATACTTGGAAAGTGCACTAAAAAGTGTGTGTTTCTGGAGAAAATGGAAAAAGTGGAAATCTTTAATTTCGAGTCATGTGCTWGGCGAAATCTCTGACAACTTGCCTTTCTTAATAGAAATATATAAGACGGGGCAGTGGCGCCTGTAGCTCCGCGAGCTCGAGTAATTGGATTTTTCAGCCGTTTATCTGAGATTGCAGCTGCACGAACTTTGGCTTATATTGGCAGCTAAATCGAAATGTTTGTGTTTCACATTCGATGTTTTTGAGTCTTAGATTTCTTTAGAAACTAGAGGGTGGAGCTTGTGAAAATTGCACAAAATTGTAGTGTTGAACTTTTGAAATGTTGAATGAGAAGAAGTGGAAAATTGTATTTTAGTTTTTCAAACAAGAAAAGAAGAAGAAACAGAAAAAAACCAGGAAGAAAATGCAAAGAAAATTCAAATTTATTTTAGTCACAATTTTGAAATGTTTGGTTTTGGTTTCAAAGTAGAGGCCCGATGGGAAAATTGAGTGAAATATTTAACAAAAAAAAACAAAAAACAGATCGTATAGTAAAAGACCCGTTTGGCTGAAAGAATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>370 294 208 117 11</canonical_bands>
                <polymorphic_bands>578 294 117 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACTTGGAAAGTGCACTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAACACAAACATTTCGATTTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATACTTGGAAAGTGCACTAAAAAGTGTGTGTTTCTGGAGAAAATGGAAAAAGTGGAAATCTTTAATTTCGAGTCATGTGCTAGGCGAAATCTCTGACAACTTGCCTTTCTTAATAGAAATATATAAGACGGGGCAGTGGCGCCTGTAGCTCCGCGAGCTCGAGTAATTGGATTTTTCAGCCGTTTATCTGAGATTGCAGCTGCACGAACTTTGGCTTATATTGGCAGCTAAATCGAAATGTTTGTGTTTC</canonical_amplicon>
		<polymorphic_amplicon>ATACTTGGAAAGTGCACTAAAAAGTGTGTGTTTCTGGAGAAAATGGAAAAAGTGGAAATCTTTAATTTCGAGTCATGTGCTWGGCGAAATCTCTGACAACTTGCCTTTCTTAATAGAAATATATAAGACGGGGCAGTGGCGCCTGTAGCTCCGCGAGCTCGAGTAATTGGATTTTTCAGCCGTTTATCTGAGATTGCAGCTGCACGAACTTTGGCTTATATTGGCAGCTAAATCGAAATGTTTGTGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10719</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>495297</contig_pos>
        <strand>+</strand>
        <context>TTAGATTTCT[C/T]TAGAAACTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCGAAATGTTTGTGTTTCACATTCGATGTTTTTGAGTCTTAGATTTCT</left_flank>
        <right_flank>TAGAAACTAGAGGGTGGAGCTTGTGAAAATTGCACAAAATTGTAGTGTTG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTTTTATATGAAATTGGTAATCGGAAAGGCTCTCAATTACCCAAAGAAATTGAAAACAGTGAAAACAATTGTATAATTCTTCTTAGAAATATTTAGCCTAAAAAAATTGTCTGAAGTTGATAACCAGTACGTAACATTGAACTAAGTTTCTTTTGAAACCACTTGGGAATACCACCTAATTGTAACAAAATATAGCTCTTCTGCAGAGGAAAGTCGAATACTTGGAAAGTGCACTAAAAAGTGTGTGTTTCTGGAGAAAATGGAAAAAGTGGAAATCTTTAATTTCGAGTCATGTGCTAGGCGAAATCTCTGACAACTTGCCTTTCTTAATAGAAATATATAAGACGGGGCAGTGGCGCCTGTAGCTCCGCGAGCTCGAGTAATTGGATTTTTCAGCCGTTTATCTGAGATTGCAGCTGCACGAACTTTGGCTTATATTGGCAGCTAAATCGAAATGTTTGTGTTTCACATTCGATGTTTTTGAGTCTTAGATTTCTTTAGAAACTAGAGGGTGGAGCTTGTGAAAATTGCACAAAATTGTAGTGTTGAACTTTTGAAATGTTGAATGAGAAGAAGTGGAAAATTGTATTTTAGTTTTTCAAACAAGAAAAGAAGAAGAAACAGAAAAAAACCAGGAAGAAAATGCAAAGAAAATTCAAATTTATTTTAGTCACAATTTTGAAATGTTTGGTTTTGGTTTCAAAGTAGAGGCCCGATGGGAAAATTGAGTGAAATATTTAACAAAAAAAAACAAAAAACAGATCGTATAGTAAAAGACCCGTTTGGCTGAAAGAATTCTAGTAAAAGTACATAAAATAATTAAATGACGTTGACGGAAAGCTGATGAATACAATTCGATTTGTAACTTGTTAGTTTCGTTCTCTTGAGAGGTAGTACCACCAATAGAATACTGAAAATAAGTTGATTGATAAGTTTTCTAGTGAAACTGATTTACCATTGAAAGCTGCAAACATGGCTGGAAATGCTTTTGCTGCGAA</canonical>
            <polymorphic>TACTTTTATATGAAATTGGTAATCGGAAAGGCTCTCAATTACCCAAAGAAATTGAAAACAGTGAAAACAATTGTATAATTCTTCTTAGAAATATTTAGCCTAAAAAAATTGTCTGAAGTTGATAACCAGTACGTAACATTGAACTAAGTTTCTTTTGAAACCACTTGGGAATACCACCTAATTGTAACAAAATATAGCTCTTCTGCAGAGGAAAGTCGAATACTTGGAAAGTGCACTAAAAAGTGTGTGTTTCTGGAGAAAATGGAAAAAGTGGAAATCTTTAATTTCGAGTCATGTGCTAGGCGAAATCTCTGACAACTTGCCTTTCTTAATAGAAATATATAAGACGGGGCAGTGGCGCCTGTAGCTCCGCGAGCTCGAGTAATTGGATTTTTCAGCCGTTTATCTGAGATTGCAGCTGCACGAACTTTGGCTTATATTGGCAGCTAAATCGAAATGTTTGTGTTTCACATTCGATGTTTTTGAGTCTTAGATTTCTYTAGAAACTAGAGGGTGGAGCTTGTGAAAATTGCACAAAATTGTAGTGTTGAACTTTTGAAATGTTGAATGAGAAGAAGTGGAAAATTGTATTTTAGTTTTTCAAACAAGAAAAGAAGAAGAAACAGAAAAAAACCAGGAAGAAAATGCAAAGAAAATTCAAATTTATTTTAGTCACAATTTTGAAATGTTTGGTTTTGGTTTCAAAGTAGAGGCCCGATGGGAAAATTGAGTGAAATATTTAACAAAAAAAAACAAAAAACAGATCGTATAGTAAAAGACCCGTTTGGCTGAAAGAATTCTAGTAAAAGTACATAAAATAATTAAATGACGTTGACGGAAAGCTGATGAATACAATTCGATTTGTAACTTGTTAGTTTCGTTCTCTTGAGAGGTAGTACCACCAATAGAATACTGAAAATAAGTTGATTGATAAGTTTTCTAGTGAAACTGATTTACCATTGAAAGCTGCAAACATGGCTGGAAATGCTTTTGCTGCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACAACTTGCCTTTCTTAATAG</pcr_primer_p1>
		<pcr_primer_p2>CATTTCAAAAGTTCAACACTACA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGACAACTTGCCTTTCTTAATAGAAATATATAAGACGGGGCAGTGGCGCCTGTAGCTCCGCGAGCTCGAGTAATTGGATTTTTCAGCCGTTTATCTGAGATTGCAGCTGCACGAACTTTGGCTTATATTGGCAGCTAAATCGAAATGTTTGTGTTTCACATTCGATGTTTTTGAGTCTTAGATTTCTTTAGAAACTAGAGGGTGGAGCTTGTGAAAATTGCACAAAATTGTAGTGTTGAACTTTTGAAATG</canonical_amplicon>
		<polymorphic_amplicon>TGACAACTTGCCTTTCTTAATAGAAATATATAAGACGGGGCAGTGGCGCCTGTAGCTCCGCGAGCTCGAGTAATTGGATTTTTCAGCCGTTTATCTGAGATTGCAGCTGCACGAACTTTGGCTTATATTGGCAGCTAAATCGAAATGTTTGTGTTTCACATTCGATGTTTTTGAGTCTTAGATTTCTYTAGAAACTAGAGGGTGGAGCTTGTGAAAATTGCACAAAATTGTAGTGTTGAACTTTTGAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10720</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>537023</contig_pos>
        <strand>+</strand>
        <context>AGCAGGCTGT[C/T]CAATCTGGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAGACGTTGAAGAAGCTGTGAAGACACAAGTCGATATGCAGCAGGCTGT</left_flank>
        <right_flank>CAATCTGGTATACTCGAAAAAGAAGCAGACACCACTGCTAATTCTGAAGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAGTTTTAAGCCTTTTTTCGATTCACCCCACTCGCCAACTAAACTTTTTTACTAACTCCCCCATTCAGATTCCGTGGAAAAGTTCAGGATGAGTAAGTTTCCTTGAAGCTGTTGTGATTGTCTTACTCTTGCCTGTCAAATGCTTGTGTATGGATGCATTGATGTATCTGTGTTTCAATAATTTAGTTTATTATGATATTTCAGAACTCAAGAGAGGTTCGATAATTATCTGGAGCACATGGGAATCGATATTATTCCGGACCACAAACCCGATTGTCCATACTCAAACCAAAGTTCGAAGCGGAAGAGACATCCAAAAGTAAGTCCAGATTCATTTGATTTTTATGCCACCTATGAATATTACAGCTGGAAGTACTAAAACGAGATTCCGACGGAATTGAAACTCCAAGGAACACTTCTGCTCCGTTGGCATCAGTCGATTCACCTGGAGACGTTGAAGAAGCTGTGAAGACACAAGTCGATATGCAGCAGGCTGTCCAATCTGGTATACTCGAAAAAGAAGCAGACACCACTGCTAATTCTGAAGGAAGTCCGAAACGACAGCGGCGCCAGCAACGAAAGAAAGACAGGCATACGCTTCCGCGTTTCCCAATGATGCCAGATTCAATGGTCACCAATTTAGAACATCGAAAAGAACTTTTGGAGAATTGGCTTCAAATGGTTCTTCACATTCCGATCAACAGAAATCACCACGAGACTGCTGAGTTTTTGGAAGTTTCGAGATACTCATTTGTCAATGAATTAGGTGGAAAGCACACAGAAGGTTTCGTGAAGAAGAGACCAGGAGGTTCGAGAGTCTTCCTCGGCTGGAAACAATGTTGTGTCCGATACTTCCTACCATGGAGCAAGAGGTACCGTATTTTTGAAGGAAATTTCTAGAAAAAATTTCTTCAGATGGCTGATGGTTCGTGATTCTTTTGTTGCTTATATGGATCACCGCAGTGAGCAAATTCGAATGGTGTTGCTCATGGATCGGG</canonical>
            <polymorphic>ATAAGTTTTAAGCCTTTTTTCGATTCACCCCACTCGCCAACTAAACTTTTTTACTAACTCCCCCATTCAGATTCCGTGGAAAAGTTCAGGATGAGTAAGTTTCCTTGAAGCTGTTGTGATTGTCTTACTCTTGCCTGTCAAATGCTTGTGTATGGATGCATTGATGTATCTGTGTTTCAATAATTTAGTTTATTATGATATTTCAGAACTCAAGAGAGGTTCGATAATTATCTGGAGCACATGGGAATCGATATTATTCCGGACCACAAACCCGATTGTCCATACTCAAACCAAAGTTCGAAGCGGAAGAGACATCCAAAAGTAAGTCCAGATTCATTTGATTTTTATGCCACCTATGAATATTACAGCTGGAAGTACTAAAACGAGATTCCGACGGAATTGAAACTCCAAGGAACACTTCTGCTCCGTTGGCATCAGTCGATTCACCTGGAGACGTTGAAGAAGCTGTGAAGACACAAGTCGATATGCAGCAGGCTGTYCAATCTGGTATACTCGAAAAAGAAGCAGACACCACTGCTAATTCTGAAGGAAGTCCGAAACGACAGCGGCGCCAGCAACGAAAGAAAGACAGGCATACGCTTCCGCGTTTCCCAATGATGCCAGATTCAATGGTCACCAATTTAGAACATCGAAAAGAACTTTTGGAGAATTGGCTTCAAATGGTTCTTCACATTCCGATCAACAGAAATCACCACGAGACTGCTGAGTTTTTGGAAGTTTCGAGATACTCATTTGTCAATGAATTAGGTGGAAAGCACACAGAAGGTTTCGTGAAGAAGAGACCAGGAGGTTCGAGAGTCTTCCTCGGCTGGAAACAATGTTGTGTCCGATACTTCCTACCATGGAGCAAGAGGTACCGTATTTTTGAAGGAAATTTCTAGAAAAAATTTCTTCAGATGGCTGATGGTTCGTGATTCTTTTGTTGCTTATATGGATCACCGCAGTGAGCAAATTCGAATGGTGTTGCTCATGGATCGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAGAGACATCCAAAAGTAAGT</pcr_primer_p1>
		<pcr_primer_p2>ACTTCCTTCAGAATTAGCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAAGAGACATCCAAAAGTAAGTCCAGATTCATTTGATTTTTATGCCACCTATGAATATTACAGCTGGAAGTACTAAAACGAGATTCCGACGGAATTGAAACTCCAAGGAACACTTCTGCTCCGTTGGCATCAGTCGATTCACCTGGAGACGTTGAAGAAGCTGTGAAGACACAAGTCGATATGCAGCAGGCTGTCCAATCTGGTATACTCGAAAAAGAAGCAGACACCACTGCTAATTCTGAAGGAAGT</canonical_amplicon>
		<polymorphic_amplicon>GGAAGAGACATCCAAAAGTAAGTCCAGATTCATTTGATTTTTATGCCACCTATGAATATTACAGCTGGAAGTACTAAAACGAGATTCCGACGGAATTGAAACTCCAAGGAACACTTCTGCTCCGTTGGCATCAGTCGATTCACCTGGAGACGTTGAAGAAGCTGTGAAGACACAAGTCGATATGCAGCAGGCTGTYCAATCTGGTATACTCGAAAAAGAAGCAGACACCACTGCTAATTCTGAAGGAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10721</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>537006</contig_pos>
        <strand>+</strand>
        <context>GACACAAGTC[C/G]ATATGCAGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CATCAGTCGATTCACCTGGAGACGTTGAAGAAGCTGTGAAGACACAAGTC</left_flank>
        <right_flank>ATATGCAGCAGGCTGTCCAATCTGGTATACTCGAAAAAGAAGCAGACACC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTAATTTTGCTTTAATAAGTTTTAAGCCTTTTTTCGATTCACCCCACTCGCCAACTAAACTTTTTTACTAACTCCCCCATTCAGATTCCGTGGAAAAGTTCAGGATGAGTAAGTTTCCTTGAAGCTGTTGTGATTGTCTTACTCTTGCCTGTCAAATGCTTGTGTATGGATGCATTGATGTATCTGTGTTTCAATAATTTAGTTTATTATGATATTTCAGAACTCAAGAGAGGTTCGATAATTATCTGGAGCACATGGGAATCGATATTATTCCGGACCACAAACCCGATTGTCCATACTCAAACCAAAGTTCGAAGCGGAAGAGACATCCAAAAGTAAGTCCAGATTCATTTGATTTTTATGCCACCTATGAATATTACAGCTGGAAGTACTAAAACGAGATTCCGACGGAATTGAAACTCCAAGGAACACTTCTGCTCCGTTGGCATCAGTCGATTCACCTGGAGACGTTGAAGAAGCTGTGAAGACACAAGTCGATATGCAGCAGGCTGTCCAATCTGGTATACTCGAAAAAGAAGCAGACACCACTGCTAATTCTGAAGGAAGTCCGAAACGACAGCGGCGCCAGCAACGAAAGAAAGACAGGCATACGCTTCCGCGTTTCCCAATGATGCCAGATTCAATGGTCACCAATTTAGAACATCGAAAAGAACTTTTGGAGAATTGGCTTCAAATGGTTCTTCACATTCCGATCAACAGAAATCACCACGAGACTGCTGAGTTTTTGGAAGTTTCGAGATACTCATTTGTCAATGAATTAGGTGGAAAGCACACAGAAGGTTTCGTGAAGAAGAGACCAGGAGGTTCGAGAGTCTTCCTCGGCTGGAAACAATGTTGTGTCCGATACTTCCTACCATGGAGCAAGAGGTACCGTATTTTTGAAGGAAATTTCTAGAAAAAATTTCTTCAGATGGCTGATGGTTCGTGATTCTTTTGTTGCTTATATGGATCACCGCAGTGAGCAAATTCGAATGGT</canonical>
            <polymorphic>CATTTAATTTTGCTTTAATAAGTTTTAAGCCTTTTTTCGATTCACCCCACTCGCCAACTAAACTTTTTTACTAACTCCCCCATTCAGATTCCGTGGAAAAGTTCAGGATGAGTAAGTTTCCTTGAAGCTGTTGTGATTGTCTTACTCTTGCCTGTCAAATGCTTGTGTATGGATGCATTGATGTATCTGTGTTTCAATAATTTAGTTTATTATGATATTTCAGAACTCAAGAGAGGTTCGATAATTATCTGGAGCACATGGGAATCGATATTATTCCGGACCACAAACCCGATTGTCCATACTCAAACCAAAGTTCGAAGCGGAAGAGACATCCAAAAGTAAGTCCAGATTCATTTGATTTTTATGCCACCTATGAATATTACAGCTGGAAGTACTAAAACGAGATTCCGACGGAATTGAAACTCCAAGGAACACTTCTGCTCCGTTGGCATCAGTCGATTCACCTGGAGACGTTGAAGAAGCTGTGAAGACACAAGTCSATATGCAGCAGGCTGTCCAATCTGGTATACTCGAAAAAGAAGCAGACACCACTGCTAATTCTGAAGGAAGTCCGAAACGACAGCGGCGCCAGCAACGAAAGAAAGACAGGCATACGCTTCCGCGTTTCCCAATGATGCCAGATTCAATGGTCACCAATTTAGAACATCGAAAAGAACTTTTGGAGAATTGGCTTCAAATGGTTCTTCACATTCCGATCAACAGAAATCACCACGAGACTGCTGAGTTTTTGGAAGTTTCGAGATACTCATTTGTCAATGAATTAGGTGGAAAGCACACAGAAGGTTTCGTGAAGAAGAGACCAGGAGGTTCGAGAGTCTTCCTCGGCTGGAAACAATGTTGTGTCCGATACTTCCTACCATGGAGCAAGAGGTACCGTATTTTTGAAGGAAATTTCTAGAAAAAATTTCTTCAGATGGCTGATGGTTCGTGATTCTTTTGTTGCTTATATGGATCACCGCAGTGAGCAAATTCGAATGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>201 162 141 136 91 72 50 42 38 33 27 7</canonical_bands>
                <polymorphic_bands>201 162 141 136 91 75 72 50 38 27 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAGAGACATCCAAAAGTAAGT</pcr_primer_p1>
		<pcr_primer_p2>ACTTCCTTCAGAATTAGCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAAGAGACATCCAAAAGTAAGTCCAGATTCATTTGATTTTTATGCCACCTATGAATATTACAGCTGGAAGTACTAAAACGAGATTCCGACGGAATTGAAACTCCAAGGAACACTTCTGCTCCGTTGGCATCAGTCGATTCACCTGGAGACGTTGAAGAAGCTGTGAAGACACAAGTCGATATGCAGCAGGCTGTCCAATCTGGTATACTCGAAAAAGAAGCAGACACCACTGCTAATTCTGAAGGAAGT</canonical_amplicon>
		<polymorphic_amplicon>GGAAGAGACATCCAAAAGTAAGTCCAGATTCATTTGATTTTTATGCCACCTATGAATATTACAGCTGGAAGTACTAAAACGAGATTCCGACGGAATTGAAACTCCAAGGAACACTTCTGCTCCGTTGGCATCAGTCGATTCACCTGGAGACGTTGAAGAAGCTGTGAAGACACAAGTCSATATGCAGCAGGCTGTCCAATCTGGTATACTCGAAAAAGAAGCAGACACCACTGCTAATTCTGAAGGAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10722</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>570913</contig_pos>
        <strand>+</strand>
        <context>TTTTTCGCTG[C/T]CATTTCAAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATACGCTATTTCTCACAGTTTCGCACAAATGCGATTTGTATTTTTCGCTG</left_flank>
        <right_flank>CATTTCAAGTGCTTTCTTTTATGAAGTTTCTACAAACACAAATGATGTTG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGGAACTGCCTCTTTGCATAATCTCCTTTCAGGTGCACATGACAAAACACTACTATTTTCAGTTCCCAAAATGTCATTCAAAAAACACCTGAATATTTTTTTGATCAAATATTTGATATTTCGACTATCAGATCATCAATTGTCCGAATTCAAAAATTCGAAAATTTTGAAGCAAATAAAAAGTTTGACATGATCGGGTGCGTTAAACCAATACAGAGATTTCATATTTTAGGTCGATGTCGCTTTACAACTAGATATGTTCTTTTGGATATGTCGACATAAATCTTTTTTGTTTAACGAATATCACTTTGTTTCGTTGACTCTTTCTGTTCAATTTTTCCGGTCTTCTTCTTTTTTTTCTTCAATTTTCAAAACTTAAAACTATAGCCTAAATTAGGACTTTCGTTCTGATTCCTTCGCCTTTTCTTTGTTATCCAACGTCAGTAATACGCTATTTCTCACAGTTTCGCACAAATGCGATTTGTATTTTTCGCTGTCATTTCAAGTGCTTTCTTTTATGAAGTTTCTACAAACACAAATGATGTTGTACCGAAGGAGATGGAACTCATTTTTGTGCATACTGTAAGTTACCGTATTTCTTCGAATAGACGCTCACCCAAACTGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAATTTTGTGAACTGAAAAAATATTTGTCATGATATTTATCACCAATATTTTATCAGTGAACAAGTTTTTGATATCTTTAGCAGGAATCGAGATAGTTGAGCTCAAAGTTGGGTGAACTTCTATTAGAGGAAATACATTACATATACTGTAAATGGGAAAGCTGGAATCGAATATTCTAGATTTGGAGACACGGAGATCGAAGTCCAGATGGACACCTGAATAATGACCCTGTGGATCCAATGAGATGGATCAAAGGAGGAGGTGGATATGGTCAGCTGACTCCGGTAGGGATATTTTCAAAGTTATCCGTCAGTTGTATTTTGTTTCAG</canonical>
            <polymorphic>TTTTGGAACTGCCTCTTTGCATAATCTCCTTTCAGGTGCACATGACAAAACACTACTATTTTCAGTTCCCAAAATGTCATTCAAAAAACACCTGAATATTTTTTTGATCAAATATTTGATATTTCGACTATCAGATCATCAATTGTCCGAATTCAAAAATTCGAAAATTTTGAAGCAAATAAAAAGTTTGACATGATCGGGTGCGTTAAACCAATACAGAGATTTCATATTTTAGGTCGATGTCGCTTTACAACTAGATATGTTCTTTTGGATATGTCGACATAAATCTTTTTTGTTTAACGAATATCACTTTGTTTCGTTGACTCTTTCTGTTCAATTTTTCCGGTCTTCTTCTTTTTTTTCTTCAATTTTCAAAACTTAAAACTATAGCCTAAATTAGGACTTTCGTTCTGATTCCTTCGCCTTTTCTTTGTTATCCAACGTCAGTAATACGCTATTTCTCACAGTTTCGCACAAATGCGATTTGTATTTTTCGCTGYCATTTCAAGTGCTTTCTTTTATGAAGTTTCTACAAACACAAATGATGTTGTACCGAAGGAGATGGAACTCATTTTTGTGCATACTGTAAGTTACCGTATTTCTTCGAATAGACGCTCACCCAAACTGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAATTTTGTGAACTGAAAAAATATTTGTCATGATATTTATCACCAATATTTTATCAGTGAACAAGTTTTTGATATCTTTAGCAGGAATCGAGATAGTTGAGCTCAAAGTTGGGTGAACTTCTATTAGAGGAAATACATTACATATACTGTAAATGGGAAAGCTGGAATCGAATATTCTAGATTTGGAGACACGGAGATCGAAGTCCAGATGGACACCTGAATAATGACCCTGTGGATCCAATGAGATGGATCAAAGGAGGAGGTGGATATGGTCAGCTGACTCCGGTAGGGATATTTTCAAAGTTATCCGTCAGTTGTATTTTGTTTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCCGGTCTTCTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>ACAGTATGCACAAAAATGAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCCGGTCTTCTTCTTTTTTTTCTTCAATTTTCAAAACTTAAAACTATAGCCTAAATTAGGACTTTCGTTCTGATTCCTTCGCCTTTTCTTTGTTATCCAACGTCAGTAATACGCTATTTCTCACAGTTTCGCACAAATGCGATTTGTATTTTTCGCTGTCATTTCAAGTGCTTTCTTTTATGAAGTTTCTACAAACACAAATGATGTTGTACCGAAGGAGATGGAACTCATTTTTGTGCATACTGT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCCGGTCTTCTTCTTTTTTTTCTTCAATTTTCAAAACTTAAAACTATAGCCTAAATTAGGACTTTCGTTCTGATTCCTTCGCCTTTTCTTTGTTATCCAACGTCAGTAATACGCTATTTCTCACAGTTTCGCACAAATGCGATTTGTATTTTTCGCTGYCATTTCAAGTGCTTTCTTTTATGAAGTTTCTACAAACACAAATGATGTTGTACCGAAGGAGATGGAACTCATTTTTGTGCATACTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10744</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>583352</contig_pos>
        <strand>+</strand>
        <context>CTCTATTCTA[C/T]TCTCTATCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACAATAGAGCCCTTTTGCTCTCACATCCACTACTACATCCTCTATTCTA</left_flank>
        <right_flank>TCTCTATCTTTTTTTTCCAGTTTTGGTGTAGTAGTGACACAATCATGAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAATTTTACGTTTGATTCAAAGCTACTTATATTTTCAAAGCGATCCCTCAAGCCTTGAGGATTATCCAAAGTTATGATTGTTCAAAGATGAACGGCGTAATGTTTCCTGTGATTTTCATGAGATGGAGCAACTTTGACATGCTATAAATCAGCTCGAAGTAAATCGAATAATTTGAAACTTGGTCAGTTTACTGATGAATTATTTGAATTTTTGCACTCCAAATTTGAGCACAGTAAAACGTTTCACTCAAATTATTTGTTAGTACAAACTTTCGTCAGATTAATTATGCGCCACCCTGATTTTCGATTTGAGAGCTTCACCTAGTAATCCTATTTTGAGTCGGTTAGACAAGACCAAAACTAAAAATGCATATTCCAATAAATAATTCAAAAAAAGGACAAGAACTTTTGAAAAACGTTGAGTGAAAAAAAGATGGACGAGGGTAAACACAATAGAGCCCTTTTGCTCTCACATCCACTACTACATCCTCTATTCTATTCTCTATCTTTTTTTTCCAGTTTTGGTGTAGTAGTGACACAATCATGAAGAAACGCAGAGAAATCAAGAAAAAGAAGAAGAAGACGCGGGCGGTCACTTCGAATGGGGGGCTCCACGACTTCCATGCTATATTTCTGCACTAAGTAGGCAGATAGAGCAAGAGCAAAAGGAGGAAAAGAAACTGAATGGAAGATGTGTTACACCACAGGCAGCTGTATAGTTGAAAAAAGCAGAAAAAGTTTGAAACGTTTTGGAGTATGTGACAATCATTCCTACAACTTTTTGGGTTAGAAGCTTTGAAGTCGTGGCAGAAGAGTACAACCATCAACTATATCCATAAACTGAAACCGAGTTACCGTAAACACCCAAATGGAGTGCCGCCCAAAAAAAGGTCATCTTTGAGCCCAGATATTTAATTCTCTGTAAAAGATCTCAAAAATTTGTCAACTGATAAGCTGTTTATTATACTATCAAAAATATTTTGTCAGTTGATCACTTTT</canonical>
            <polymorphic>ATAATTTTACGTTTGATTCAAAGCTACTTATATTTTCAAAGCGATCCCTCAAGCCTTGAGGATTATCCAAAGTTATGATTGTTCAAAGATGAACGGCGTAATGTTTCCTGTGATTTTCATGAGATGGAGCAACTTTGACATGCTATAAATCAGCTCGAAGTAAATCGAATAATTTGAAACTTGGTCAGTTTACTGATGAATTATTTGAATTTTTGCACTCCAAATTTGAGCACAGTAAAACGTTTCACTCAAATTATTTGTTAGTACAAACTTTCGTCAGATTAATTATGCGCCACCCTGATTTTCGATTTGAGAGCTTCACCTAGTAATCCTATTTTGAGTCGGTTAGACAAGACCAAAACTAAAAATGCATATTCCAATAAATAATTCAAAAAAAGGACAAGAACTTTTGAAAAACGTTGAGTGAAAAAAAGATGGACGAGGGTAAACACAATAGAGCCCTTTTGCTCTCACATCCACTACTACATCCTCTATTCTAYTCTCTATCTTTTTTTTCCAGTTTTGGTGTAGTAGTGACACAATCATGAAGAAACGCAGAGAAATCAAGAAAAAGAAGAAGAAGACGCGGGCGGTCACTTCGAATGGGGGGCTCCACGACTTCCATGCTATATTTCTGCACTAAGTAGGCAGATAGAGCAAGAGCAAAAGGAGGAAAAGAAACTGAATGGAAGATGTGTTACACCACAGGCAGCTGTATAGTTGAAAAAAGCAGAAAAAGTTTGAAACGTTTTGGAGTATGTGACAATCATTCCTACAACTTTTTGGGTTAGAAGCTTTGAAGTCGTGGCAGAAGAGTACAACCATCAACTATATCCATAAACTGAAACCGAGTTACCGTAAACACCCAAATGGAGTGCCGCCCAAAAAAAGGTCATCTTTGAGCCCAGATATTTAATTCTCTGTAAAAGATCTCAAAAATTTGTCAACTGATAAGCTGTTTATTATACTATCAAAAATATTTTGTCAGTTGATCACTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCTATTTTGAGTCGGTTAGAC</pcr_primer_p1>
		<pcr_primer_p2>TCTTCTTTTTCTTGATTTCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCCTATTTTGAGTCGGTTAGACAAGACCAAAACTAAAAATGCATATTCCAATAAATAATTCAAAAAAAGGACAAGAACTTTTGAAAAACGTTGAGTGAAAAAAAGATGGACGAGGGTAAACACAATAGAGCCCTTTTGCTCTCACATCCACTACTACATCCTCTATTCTATTCTCTATCTTTTTTTTCCAGTTTTGGTGTAGTAGTGACACAATCATGAAGAAACGCAGAGAAATCAAGAAAAAGAAGA</canonical_amplicon>
		<polymorphic_amplicon>ATCCTATTTTGAGTCGGTTAGACAAGACCAAAACTAAAAATGCATATTCCAATAAATAATTCAAAAAAAGGACAAGAACTTTTGAAAAACGTTGAGTGAAAAAAAGATGGACGAGGGTAAACACAATAGAGCCCTTTTGCTCTCACATCCACTACTACATCCTCTATTCTAYTCTCTATCTTTTTTTTCCAGTTTTGGTGTAGTAGTGACACAATCATGAAGAAACGCAGAGAAATCAAGAAAAAGAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10745</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>583322</contig_pos>
        <strand>+</strand>
        <context>CCCTTTTGCT[C/G]TCACATCCAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTGAGTGAAAAAAAGATGGACGAGGGTAAACACAATAGAGCCCTTTTGCT</left_flank>
        <right_flank>TCACATCCACTACTACATCCTCTATTCTATTCTCTATCTTTTTTTTCCAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTTGGAAGCACAAAAATTGGTATGAATATAATTTTACGTTTGATTCAAAGCTACTTATATTTTCAAAGCGATCCCTCAAGCCTTGAGGATTATCCAAAGTTATGATTGTTCAAAGATGAACGGCGTAATGTTTCCTGTGATTTTCATGAGATGGAGCAACTTTGACATGCTATAAATCAGCTCGAAGTAAATCGAATAATTTGAAACTTGGTCAGTTTACTGATGAATTATTTGAATTTTTGCACTCCAAATTTGAGCACAGTAAAACGTTTCACTCAAATTATTTGTTAGTACAAACTTTCGTCAGATTAATTATGCGCCACCCTGATTTTCGATTTGAGAGCTTCACCTAGTAATCCTATTTTGAGTCGGTTAGACAAGACCAAAACTAAAAATGCATATTCCAATAAATAATTCAAAAAAAGGACAAGAACTTTTGAAAAACGTTGAGTGAAAAAAAGATGGACGAGGGTAAACACAATAGAGCCCTTTTGCTCTCACATCCACTACTACATCCTCTATTCTATTCTCTATCTTTTTTTTCCAGTTTTGGTGTAGTAGTGACACAATCATGAAGAAACGCAGAGAAATCAAGAAAAAGAAGAAGAAGACGCGGGCGGTCACTTCGAATGGGGGGCTCCACGACTTCCATGCTATATTTCTGCACTAAGTAGGCAGATAGAGCAAGAGCAAAAGGAGGAAAAGAAACTGAATGGAAGATGTGTTACACCACAGGCAGCTGTATAGTTGAAAAAAGCAGAAAAAGTTTGAAACGTTTTGGAGTATGTGACAATCATTCCTACAACTTTTTGGGTTAGAAGCTTTGAAGTCGTGGCAGAAGAGTACAACCATCAACTATATCCATAAACTGAAACCGAGTTACCGTAAACACCCAAATGGAGTGCCGCCCAAAAAAAGGTCATCTTTGAGCCCAGATATTTAATTCTCTGTAAAAGATCTCAAAAATTTGTCAACTGATAAGCTGTTTATTATACTA</canonical>
            <polymorphic>TATTTTGGAAGCACAAAAATTGGTATGAATATAATTTTACGTTTGATTCAAAGCTACTTATATTTTCAAAGCGATCCCTCAAGCCTTGAGGATTATCCAAAGTTATGATTGTTCAAAGATGAACGGCGTAATGTTTCCTGTGATTTTCATGAGATGGAGCAACTTTGACATGCTATAAATCAGCTCGAAGTAAATCGAATAATTTGAAACTTGGTCAGTTTACTGATGAATTATTTGAATTTTTGCACTCCAAATTTGAGCACAGTAAAACGTTTCACTCAAATTATTTGTTAGTACAAACTTTCGTCAGATTAATTATGCGCCACCCTGATTTTCGATTTGAGAGCTTCACCTAGTAATCCTATTTTGAGTCGGTTAGACAAGACCAAAACTAAAAATGCATATTCCAATAAATAATTCAAAAAAAGGACAAGAACTTTTGAAAAACGTTGAGTGAAAAAAAGATGGACGAGGGTAAACACAATAGAGCCCTTTTGCTSTCACATCCACTACTACATCCTCTATTCTATTCTCTATCTTTTTTTTCCAGTTTTGGTGTAGTAGTGACACAATCATGAAGAAACGCAGAGAAATCAAGAAAAAGAAGAAGAAGACGCGGGCGGTCACTTCGAATGGGGGGCTCCACGACTTCCATGCTATATTTCTGCACTAAGTAGGCAGATAGAGCAAGAGCAAAAGGAGGAAAAGAAACTGAATGGAAGATGTGTTACACCACAGGCAGCTGTATAGTTGAAAAAAGCAGAAAAAGTTTGAAACGTTTTGGAGTATGTGACAATCATTCCTACAACTTTTTGGGTTAGAAGCTTTGAAGTCGTGGCAGAAGAGTACAACCATCAACTATATCCATAAACTGAAACCGAGTTACCGTAAACACCCAAATGGAGTGCCGCCCAAAAAAAGGTCATCTTTGAGCCCAGATATTTAATTCTCTGTAAAAGATCTCAAAAATTTGTCAACTGATAAGCTGTTTATTATACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCTATTTTGAGTCGGTTAGAC</pcr_primer_p1>
		<pcr_primer_p2>TCTTCTTTTTCTTGATTTCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCCTATTTTGAGTCGGTTAGACAAGACCAAAACTAAAAATGCATATTCCAATAAATAATTCAAAAAAAGGACAAGAACTTTTGAAAAACGTTGAGTGAAAAAAAGATGGACGAGGGTAAACACAATAGAGCCCTTTTGCTCTCACATCCACTACTACATCCTCTATTCTATTCTCTATCTTTTTTTTCCAGTTTTGGTGTAGTAGTGACACAATCATGAAGAAACGCAGAGAAATCAAGAAAAAGAAGA</canonical_amplicon>
		<polymorphic_amplicon>ATCCTATTTTGAGTCGGTTAGACAAGACCAAAACTAAAAATGCATATTCCAATAAATAATTCAAAAAAAGGACAAGAACTTTTGAAAAACGTTGAGTGAAAAAAAGATGGACGAGGGTAAACACAATAGAGCCCTTTTGCTSTCACATCCACTACTACATCCTCTATTCTATTCTCTATCTTTTTTTTCCAGTTTTGGTGTAGTAGTGACACAATCATGAAGAAACGCAGAGAAATCAAGAAAAAGAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10746</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>714917</contig_pos>
        <strand>+</strand>
        <context>ACAGAGCGAT[A/T]GTGCCTTCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATTCATTTGACTTTCAGAAAAAAGCGAAACTCACTTGAAACAGAGCGAT</left_flank>
        <right_flank>GTGCCTTCATCATCTGGGAAGCCTTCTTTTCGAAGTGAAGTGGCTATGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATTTTGGTGTTTCCGGAATTCGAATCACAAAGCATAACGATGCGAACAATGGAATCAGTGATAGTAAAAGAAGTCGAGAGAGTGACTCGCCAAGTACTGACTTCATTCCAAGAACCATTCCAAGCACGCACATTGTACCGTAGCCAATTTCGCATAGAAACGATGACATTCCACGAATTTCAATAGGCGATGTCTCTTGAACATATAGTAGAAGACAAGCGTCACCGAGTGGTGAAACAAGTGCAGTCAGTGATCTACCGAGAATCAGTCCCCATGGCAAGTAGAAACACATGGAAAAGTATTGAACGAATGTAGCGAATATTGTCGTTGTCACACAAACGATATAACCAATTTTTCTTCCGTACTTGTCAGAAATCATCGGTGTCATCATAGCACCGAATATTTGAGCAACAAACCAGCAATTCAAAGTCGCCGACTGAAAAAATATTCATTTGACTTTCAGAAAAAAGCGAAACTCACTTGAAACAGAGCGATAGTGCCTTCATCATCTGGGAAGCCTTCTTTTCGAAGTGAAGTGGCTATGAATCTAGATAATAATGAATTATCATCTTTGAAGAGTATATCTTACTTATGTAGCTTTCCGACAGCAGTGTTGACTGAAGAGTTAGTGAAACCAGATGGAAAGTTAGTGATTGCCGAAAGGGCTGCATAAATTGAGATGAGTCGCACTGTTTGCCAGCGCATCTGAAATAATGAATATTTTCAGATTAACTCGAAAAGAAACAGCATGAGCCGAAAGTGTGATTGCAAAAACTACATCTCGTGAGAATTCCCAGAAATAAAATAAATTTTAGCGCCTTTCAGTTTAAAGGAACATACGATCCCGCGCAGTGGTTTCACAACGAAAGTTCTACTGTAGATGTGTTTTCTTTTTTGTTTTTTTTGTTTTTCCTATTTTTTTTTAATTTCTTGCATTTAGAATCGCTTTGAACCCGAAATCATGCCGAAGGGAGGAGCTTCATCTCTAACCCCAGT</canonical>
            <polymorphic>AAAAATTTTGGTGTTTCCGGAATTCGAATCACAAAGCATAACGATGCGAACAATGGAATCAGTGATAGTAAAAGAAGTCGAGAGAGTGACTCGCCAAGTACTGACTTCATTCCAAGAACCATTCCAAGCACGCACATTGTACCGTAGCCAATTTCGCATAGAAACGATGACATTCCACGAATTTCAATAGGCGATGTCTCTTGAACATATAGTAGAAGACAAGCGTCACCGAGTGGTGAAACAAGTGCAGTCAGTGATCTACCGAGAATCAGTCCCCATGGCAAGTAGAAACACATGGAAAAGTATTGAACGAATGTAGCGAATATTGTCGTTGTCACACAAACGATATAACCAATTTTTCTTCCGTACTTGTCAGAAATCATCGGTGTCATCATAGCACCGAATATTTGAGCAACAAACCAGCAATTCAAAGTCGCCGACTGAAAAAATATTCATTTGACTTTCAGAAAAAAGCGAAACTCACTTGAAACAGAGCGATWGTGCCTTCATCATCTGGGAAGCCTTCTTTTCGAAGTGAAGTGGCTATGAATCTAGATAATAATGAATTATCATCTTTGAAGAGTATATCTTACTTATGTAGCTTTCCGACAGCAGTGTTGACTGAAGAGTTAGTGAAACCAGATGGAAAGTTAGTGATTGCCGAAAGGGCTGCATAAATTGAGATGAGTCGCACTGTTTGCCAGCGCATCTGAAATAATGAATATTTTCAGATTAACTCGAAAAGAAACAGCATGAGCCGAAAGTGTGATTGCAAAAACTACATCTCGTGAGAATTCCCAGAAATAAAATAAATTTTAGCGCCTTTCAGTTTAAAGGAACATACGATCCCGCGCAGTGGTTTCACAACGAAAGTTCTACTGTAGATGTGTTTTCTTTTTTGTTTTTTTTGTTTTTCCTATTTTTTTTTAATTTCTTGCATTTAGAATCGCTTTGAACCCGAAATCATGCCGAAGGGAGGAGCTTCATCTCTAACCCCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACGAATGTAGCGAATATTGT</pcr_primer_p1>
		<pcr_primer_p2>TCTAGATTCATAGCCACTTCACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAACGAATGTAGCGAATATTGTCGTTGTCACACAAACGATATAACCAATTTTTCTTCCGTACTTGTCAGAAATCATCGGTGTCATCATAGCACCGAATATTTGAGCAACAAACCAGCAATTCAAAGTCGCCGACTGAAAAAATATTCATTTGACTTTCAGAAAAAAGCGAAACTCACTTGAAACAGAGCGATAGTGCCTTCATCATCTGGGAAGCCTTCTTTTCGAAGTGAAGTGGCTATGAATCTAGA</canonical_amplicon>
		<polymorphic_amplicon>GAACGAATGTAGCGAATATTGTCGTTGTCACACAAACGATATAACCAATTTTTCTTCCGTACTTGTCAGAAATCATCGGTGTCATCATAGCACCGAATATTTGAGCAACAAACCAGCAATTCAAAGTCGCCGACTGAAAAAATATTCATTTGACTTTCAGAAAAAAGCGAAACTCACTTGAAACAGAGCGATWGTGCCTTCATCATCTGGGAAGCCTTCTTTTCGAAGTGAAGTGGCTATGAATCTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10747</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>717235</contig_pos>
        <strand>+</strand>
        <context>GATATTACCC[A/G]AAATGGTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGGAGAACTCTTCGTTCATCCGGAAAACTAGTTACGCTAGATATTACCC</left_flank>
        <right_flank>AAATGGTTCTCCAGCTGGAACAGATGAGTGTATCGAAAGCTCCAATTCAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCAATAATTTTCAGCACTTCAAATTTCAACTGATAGTTTTGATTTCAATCAAAAGACATTGGAAGAAGATGTCAAGGACATCAAAAACATTGAAAAAGTTGAAGAATATATTCCGTCGGAGCCAGTTCATCGTATGAAGAGGAAAATCAAAAACAGTCCAGTGCATGAATCTAAGGTGGCTGAAGAGCCTAGTTCCCCTGAACAGAGGGTGACGAAAAGGAAACTCAGGAGTCAGAATAATGTAATATTTCAGTTGTATTCGTCTTTTGAATTTGATTTTTTACAGACATCTGATAAATCGAATACTGATATCTCCTCTCATATTTCGTCTGGTCAATTAAGTGAAGCCGAATATTTCGAAGATACACTTCTTACTACAAAAGAGGAAAGAGTTGGCTTGAATTCAATAGAGGCAAAAGTGAAGAAGGAGCCCGAAGTCCGGGAGTACCGGAGAACTCTTCGTTCATCCGGAAAACTAGTTACGCTAGATATTACCCAAAATGGTTCTCCAGCTGGAACAGATGAGTGTATCGAAAGCTCCAATTCACCAATTCCGAAGCCTATAATTAAATCAACTAAGGATGTCAAGTTGAAGTCAAATCGGAAAGTAGTCTTCCGCGAAAACGTAATATCTCTTATAACTCTATCCTACCATCATCTCATTTTTAGCAGGAAGGACAACTCCACACTATAATACACGAAATATCTCGCGAATCATCATACGAGACTGTTCCAGAAGTAGAGAAAAAAGTGAAATATGAAACGAAACCAACAGCTTCGCTTCAAAAGGGTTCTCCAACACGAACATCAAATCAGCAAGGTAAAGTGAAATCGAATGTTGAAAATTTTAATTTTATTTTTCAGAAACCGCCTTCGATGATACTGATATGTTTCAGCCACTCTATAGAGATGATTTGGATGATGATGATGATGATGATGATGGTATCAACGATGATCTCTCGGATATTCTTCTTTCAGACGACGATCTTATGATTATC</canonical>
            <polymorphic>TATCAATAATTTTCAGCACTTCAAATTTCAACTGATAGTTTTGATTTCAATCAAAAGACATTGGAAGAAGATGTCAAGGACATCAAAAACATTGAAAAAGTTGAAGAATATATTCCGTCGGAGCCAGTTCATCGTATGAAGAGGAAAATCAAAAACAGTCCAGTGCATGAATCTAAGGTGGCTGAAGAGCCTAGTTCCCCTGAACAGAGGGTGACGAAAAGGAAACTCAGGAGTCAGAATAATGTAATATTTCAGTTGTATTCGTCTTTTGAATTTGATTTTTTACAGACATCTGATAAATCGAATACTGATATCTCCTCTCATATTTCGTCTGGTCAATTAAGTGAAGCCGAATATTTCGAAGATACACTTCTTACTACAAAAGAGGAAAGAGTTGGCTTGAATTCAATAGAGGCAAAAGTGAAGAAGGAGCCCGAAGTCCGGGAGTACCGGAGAACTCTTCGTTCATCCGGAAAACTAGTTACGCTAGATATTACCCRAAATGGTTCTCCAGCTGGAACAGATGAGTGTATCGAAAGCTCCAATTCACCAATTCCGAAGCCTATAATTAAATCAACTAAGGATGTCAAGTTGAAGTCAAATCGGAAAGTAGTCTTCCGCGAAAACGTAATATCTCTTATAACTCTATCCTACCATCATCTCATTTTTAGCAGGAAGGACAACTCCACACTATAATACACGAAATATCTCGCGAATCATCATACGAGACTGTTCCAGAAGTAGAGAAAAAAGTGAAATATGAAACGAAACCAACAGCTTCGCTTCAAAAGGGTTCTCCAACACGAACATCAAATCAGCAAGGTAAAGTGAAATCGAATGTTGAAAATTTTAATTTTATTTTTCAGAAACCGCCTTCGATGATACTGATATGTTTCAGCCACTCTATAGAGATGATTTGGATGATGATGATGATGATGATGATGGTATCAACGATGATCTCTCGGATATTCTTCTTTCAGACGACGATCTTATGATTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTCTTACTACAAAAGAGGAAAGA</pcr_primer_p1>
		<pcr_primer_p2>AAGACTACTTTCCGATTTGACTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTTCTTACTACAAAAGAGGAAAGAGTTGGCTTGAATTCAATAGAGGCAAAAGTGAAGAAGGAGCCCGAAGTCCGGGAGTACCGGAGAACTCTTCGTTCATCCGGAAAACTAGTTACGCTAGATATTACCCAAAATGGTTCTCCAGCTGGAACAGATGAGTGTATCGAAAGCTCCAATTCACCAATTCCGAAGCCTATAATTAAATCAACTAAGGATGTCAAGTTGAAGTCAAATCGGAAAGTAGTCTT</canonical_amplicon>
		<polymorphic_amplicon>ACTTCTTACTACAAAAGAGGAAAGAGTTGGCTTGAATTCAATAGAGGCAAAAGTGAAGAAGGAGCCCGAAGTCCGGGAGTACCGGAGAACTCTTCGTTCATCCGGAAAACTAGTTACGCTAGATATTACCCRAAATGGTTCTCCAGCTGGAACAGATGAGTGTATCGAAAGCTCCAATTCACCAATTCCGAAGCCTATAATTAAATCAACTAAGGATGTCAAGTTGAAGTCAAATCGGAAAGTAGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10748</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>717103</contig_pos>
        <strand>+</strand>
        <context>TTCGAAGATA[C/T]ACTTCTTACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCTCATATTTCGTCTGGTCAATTAAGTGAAGCCGAATATTTCGAAGATA</left_flank>
        <right_flank>ACTTCTTACTACAAAAGAGGAAAGAGTTGGCTTGAATTCAATAGAGGCAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTTTGCTTCCCGCGGAATGCTTCGTTCTTCAACTAAGGAACAAGCCTATTCAGCCGAGCTCAAACTCACTCGTTTCAGAAGACACCGCACAACTGCTCGTCTGTTCTCTCTATATCTTTCGTTGCAGTAATATCAATAATTTTCAGCACTTCAAATTTCAACTGATAGTTTTGATTTCAATCAAAAGACATTGGAAGAAGATGTCAAGGACATCAAAAACATTGAAAAAGTTGAAGAATATATTCCGTCGGAGCCAGTTCATCGTATGAAGAGGAAAATCAAAAACAGTCCAGTGCATGAATCTAAGGTGGCTGAAGAGCCTAGTTCCCCTGAACAGAGGGTGACGAAAAGGAAACTCAGGAGTCAGAATAATGTAATATTTCAGTTGTATTCGTCTTTTGAATTTGATTTTTTACAGACATCTGATAAATCGAATACTGATATCTCCTCTCATATTTCGTCTGGTCAATTAAGTGAAGCCGAATATTTCGAAGATACACTTCTTACTACAAAAGAGGAAAGAGTTGGCTTGAATTCAATAGAGGCAAAAGTGAAGAAGGAGCCCGAAGTCCGGGAGTACCGGAGAACTCTTCGTTCATCCGGAAAACTAGTTACGCTAGATATTACCCAAAATGGTTCTCCAGCTGGAACAGATGAGTGTATCGAAAGCTCCAATTCACCAATTCCGAAGCCTATAATTAAATCAACTAAGGATGTCAAGTTGAAGTCAAATCGGAAAGTAGTCTTCCGCGAAAACGTAATATCTCTTATAACTCTATCCTACCATCATCTCATTTTTAGCAGGAAGGACAACTCCACACTATAATACACGAAATATCTCGCGAATCATCATACGAGACTGTTCCAGAAGTAGAGAAAAAAGTGAAATATGAAACGAAACCAACAGCTTCGCTTCAAAAGGGTTCTCCAACACGAACATCAAATCAGCAAGGTAAAGTGAAATCGAATGTTGAAAATTTTAATTTTATTTTTCAGAA</canonical>
            <polymorphic>CAGTTTGCTTCCCGCGGAATGCTTCGTTCTTCAACTAAGGAACAAGCCTATTCAGCCGAGCTCAAACTCACTCGTTTCAGAAGACACCGCACAACTGCTCGTCTGTTCTCTCTATATCTTTCGTTGCAGTAATATCAATAATTTTCAGCACTTCAAATTTCAACTGATAGTTTTGATTTCAATCAAAAGACATTGGAAGAAGATGTCAAGGACATCAAAAACATTGAAAAAGTTGAAGAATATATTCCGTCGGAGCCAGTTCATCGTATGAAGAGGAAAATCAAAAACAGTCCAGTGCATGAATCTAAGGTGGCTGAAGAGCCTAGTTCCCCTGAACAGAGGGTGACGAAAAGGAAACTCAGGAGTCAGAATAATGTAATATTTCAGTTGTATTCGTCTTTTGAATTTGATTTTTTACAGACATCTGATAAATCGAATACTGATATCTCCTCTCATATTTCGTCTGGTCAATTAAGTGAAGCCGAATATTTCGAAGATAYACTTCTTACTACAAAAGAGGAAAGAGTTGGCTTGAATTCAATAGAGGCAAAAGTGAAGAAGGAGCCCGAAGTCCGGGAGTACCGGAGAACTCTTCGTTCATCCGGAAAACTAGTTACGCTAGATATTACCCAAAATGGTTCTCCAGCTGGAACAGATGAGTGTATCGAAAGCTCCAATTCACCAATTCCGAAGCCTATAATTAAATCAACTAAGGATGTCAAGTTGAAGTCAAATCGGAAAGTAGTCTTCCGCGAAAACGTAATATCTCTTATAACTCTATCCTACCATCATCTCATTTTTAGCAGGAAGGACAACTCCACACTATAATACACGAAATATCTCGCGAATCATCATACGAGACTGTTCCAGAAGTAGAGAAAAAAGTGAAATATGAAACGAAACCAACAGCTTCGCTTCAAAAGGGTTCTCCAACACGAACATCAAATCAGCAAGGTAAAGTGAAATCGAATGTTGAAAATTTTAATTTTATTTTTCAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>147 139 133 107 70 59 55 54 48 38 33 27 23 19 16 15 10 5 2</canonical_bands>
                <polymorphic_bands>147 139 133 107 77 70 59 55 48 38 33 27 19 16 15 10 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGAATACTGATATCTCCTCTCA</pcr_primer_p1>
		<pcr_primer_p2>AATTGGAGCTTTCGATACACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCGAATACTGATATCTCCTCTCATATTTCGTCTGGTCAATTAAGTGAAGCCGAATATTTCGAAGATACACTTCTTACTACAAAAGAGGAAAGAGTTGGCTTGAATTCAATAGAGGCAAAAGTGAAGAAGGAGCCCGAAGTCCGGGAGTACCGGAGAACTCTTCGTTCATCCGGAAAACTAGTTACGCTAGATATTACCCAAAATGGTTCTCCAGCTGGAACAGATGAGTGTATCGAAAGCTCCAATT</canonical_amplicon>
		<polymorphic_amplicon>TCGAATACTGATATCTCCTCTCATATTTCGTCTGGTCAATTAAGTGAAGCCGAATATTTCGAAGATAYACTTCTTACTACAAAAGAGGAAAGAGTTGGCTTGAATTCAATAGAGGCAAAAGTGAAGAAGGAGCCCGAAGTCCGGGAGTACCGGAGAACTCTTCGTTCATCCGGAAAACTAGTTACGCTAGATATTACCCAAAATGGTTCTCCAGCTGGAACAGATGAGTGTATCGAAAGCTCCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10749</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>717012</contig_pos>
        <strand>+</strand>
        <context>TTTTGAAWTT[C/G]ATTTTTTACA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCAGGAGTCAGAATAATGTAATATTTCAGTTGTATTCGTCTTTTGAATTT</left_flank>
        <right_flank>ATTTTTTACAGACATCTGATAAATCGAATACTGATATCTCCTCTCATATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATTATTTATTCATGTCCCCCCACCTTTAAAAAGGTATCTGCAAACTGTATTTAACAATTCAGATAATAAGTACTGATCACTCATCTGAACAGTTTGCTTCCCGCGGAATGCTTCGTTCTTCAACTAAGGAACAAGCCTATTCAGCCGAGCTCAAACTCACTCGTTTCAGAAGACACCGCACAACTGCTCGTCTGTTCTCTCTATATCTTTCGTTGCAGTAATATCAATAATTTTCAGCACTTCAAATTTCAACTGATAGTTTTGATTTCAATCAAAAGACATTGGAAGAAGATGTCAAGGACATCAAAAACATTGAAAAAGTTGAAGAATATATTCCGTCGGAGCCAGTTCATCGTATGAAGAGGAAAATCAAAAACAGTCCAGTGCATGAATCTAAGGTGGCTGAAGAGCCTAGTTCCCCTGAACAGAGGGTGACGAAAAGGAAACTCAGGAGTCAGAATAATGTAATATTTCAGTTGTATTCGTCTTTTGAATTTGATTTTTTACAGACATCTGATAAATCGAATACTGATATCTCCTCTCATATTTCGTCTGGTCAATTAAGTGAAGCCGAATATTTCGAAGATACACTTCTTACTACAAAAGAGGAAAGAGTTGGCTTGAATTCAATAGAGGCAAAAGTGAAGAAGGAGCCCGAAGTCCGGGAGTACCGGAGAACTCTTCGTTCATCCGGAAAACTAGTTACGCTAGATATTACCCAAAATGGTTCTCCAGCTGGAACAGATGAGTGTATCGAAAGCTCCAATTCACCAATTCCGAAGCCTATAATTAAATCAACTAAGGATGTCAAGTTGAAGTCAAATCGGAAAGTAGTCTTCCGCGAAAACGTAATATCTCTTATAACTCTATCCTACCATCATCTCATTTTTAGCAGGAAGGACAACTCCACACTATAATACACGAAATATCTCGCGAATCATCATACGAGACTGTTCCAGAAGTAGAGAAAAAAGTGAAATATGAAACGAAACCAACAG</canonical>
            <polymorphic>ACATTATTTATTCATGTCCCCCCACCTTTAAAAAGGTATCTGCAAACTGTATTTAACAATTCAGATAATAAGTACTGATCACTCATCTGAACAGTTTGCTTCCCGCGGAATGCTTCGTTCTTCAACTAAGGAACAAGCCTATTCAGCCGAGCTCAAACTCACTCGTTTCAGAAGACACCGCACAACTGCTCGTCTGTTCTCTCTATATCTTTCGTTGCAGTAATATCAATAATTTTCAGCACTTCAAATTTCAACTGATAGTTTTGATTTCAATCAAAAGACATTGGAAGAAGATGTCAAGGACATCAAAAACATTGAAAAAGTTGAAGAATATATTCCGTCGGAGCCAGTTCATCGTATGAAGAGGAAAATCAAAAACAGTCCAGTGCATGAATCTAAGGTGGCTGAAGAGCCTAGTTCCCCTGAACAGAGGGTGACGAAAAGGAAACTCAGGAGTCAGAATAATGTAATATTTCAGTTGTATTCGTCTTTTGAATTTSATTTTTTACAGACATCTGATAAATCGAATACTGATATCTCCTCTCATATTTCGTCTGGTCAATTAAGTGAAGCCGAATATTTCGAAGATACACTTCTTACTACAAAAGAGGAAAGAGTTGGCTTGAATTCAATAGAGGCAAAAGTGAAGAAGGAGCCCGAAGTCCGGGAGTACCGGAGAACTCTTCGTTCATCCGGAAAACTAGTTACGCTAGATATTACCCAAAATGGTTCTCCAGCTGGAACAGATGAGTGTATCGAAAGCTCCAATTCACCAATTCCGAAGCCTATAATTAAATCAACTAAGGATGTCAAGTTGAAGTCAAATCGGAAAGTAGTCTTCCGCGAAAACGTAATATCTCTTATAACTCTATCCTACCATCATCTCATTTTTAGCAGGAAGGACAACTCCACACTATAATACACGAAATATCTCGCGAATCATCATACGAGACTGTTCCAGAAGTAGAGAAAAAAGTGAAATATGAAACGAAACCAACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACATTGAAAAAGTTGAAGA</pcr_primer_p1>
		<pcr_primer_p2>CAGACGAAATATGAGAGGAGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAACATTGAAAAAGTTGAAGAATATATTCCGTCGGAGCCAGTTCATCGTATGAAGAGGAAAATCAAAAACAGTCCAGTGCATGAATCTAAGGTGGCTGAAGAGCCTAGTTCCCCTGAACAGAGGGTGACGAAAAGGAAACTCAGGAGTCAGAATAATGTAATATTTCAGTTGTATTCGTCTTTTGAATTTGATTTTTTACAGACATCTGATAAATCGAATACTGATATCTCCTCTCATATTTCGTCTG</canonical_amplicon>
		<polymorphic_amplicon>AAAAACATTGAAAAAGTTGAAGAATATATTCCGTCGGAGCCAGTTCATCGTATGAAGAGGAAAATCAAAAACAGTCCAGTGCATGAATCTAAGGTGGCTGAAGAGCCTAGTTCCCCTGAACAGAGGGTGACGAAAAGGAAACTCAGGAGTCAGAATAATGTAATATTTCAGTTGTATTCGTCTTTTGAATTTSATTTTTTACAGACATCTGATAAATCGAATACTGATATCTCCTCTCATATTTCGTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10750</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>717009</contig_pos>
        <strand>+</strand>
        <context>GTCTTTTGAA[A/T]TTSATTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACTCAGGAGTCAGAATAATGTAATATTTCAGTTGTATTCGTCTTTTGAA</left_flank>
        <right_flank>TTGATTTTTTACAGACATCTGATAAATCGAATACTGATATCTCCTCTCAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAACATTATTTATTCATGTCCCCCCACCTTTAAAAAGGTATCTGCAAACTGTATTTAACAATTCAGATAATAAGTACTGATCACTCATCTGAACAGTTTGCTTCCCGCGGAATGCTTCGTTCTTCAACTAAGGAACAAGCCTATTCAGCCGAGCTCAAACTCACTCGTTTCAGAAGACACCGCACAACTGCTCGTCTGTTCTCTCTATATCTTTCGTTGCAGTAATATCAATAATTTTCAGCACTTCAAATTTCAACTGATAGTTTTGATTTCAATCAAAAGACATTGGAAGAAGATGTCAAGGACATCAAAAACATTGAAAAAGTTGAAGAATATATTCCGTCGGAGCCAGTTCATCGTATGAAGAGGAAAATCAAAAACAGTCCAGTGCATGAATCTAAGGTGGCTGAAGAGCCTAGTTCCCCTGAACAGAGGGTGACGAAAAGGAAACTCAGGAGTCAGAATAATGTAATATTTCAGTTGTATTCGTCTTTTGAATTTGATTTTTTACAGACATCTGATAAATCGAATACTGATATCTCCTCTCATATTTCGTCTGGTCAATTAAGTGAAGCCGAATATTTCGAAGATACACTTCTTACTACAAAAGAGGAAAGAGTTGGCTTGAATTCAATAGAGGCAAAAGTGAAGAAGGAGCCCGAAGTCCGGGAGTACCGGAGAACTCTTCGTTCATCCGGAAAACTAGTTACGCTAGATATTACCCAAAATGGTTCTCCAGCTGGAACAGATGAGTGTATCGAAAGCTCCAATTCACCAATTCCGAAGCCTATAATTAAATCAACTAAGGATGTCAAGTTGAAGTCAAATCGGAAAGTAGTCTTCCGCGAAAACGTAATATCTCTTATAACTCTATCCTACCATCATCTCATTTTTAGCAGGAAGGACAACTCCACACTATAATACACGAAATATCTCGCGAATCATCATACGAGACTGTTCCAGAAGTAGAGAAAAAAGTGAAATATGAAACGAAACCAA</canonical>
            <polymorphic>AGAACATTATTTATTCATGTCCCCCCACCTTTAAAAAGGTATCTGCAAACTGTATTTAACAATTCAGATAATAAGTACTGATCACTCATCTGAACAGTTTGCTTCCCGCGGAATGCTTCGTTCTTCAACTAAGGAACAAGCCTATTCAGCCGAGCTCAAACTCACTCGTTTCAGAAGACACCGCACAACTGCTCGTCTGTTCTCTCTATATCTTTCGTTGCAGTAATATCAATAATTTTCAGCACTTCAAATTTCAACTGATAGTTTTGATTTCAATCAAAAGACATTGGAAGAAGATGTCAAGGACATCAAAAACATTGAAAAAGTTGAAGAATATATTCCGTCGGAGCCAGTTCATCGTATGAAGAGGAAAATCAAAAACAGTCCAGTGCATGAATCTAAGGTGGCTGAAGAGCCTAGTTCCCCTGAACAGAGGGTGACGAAAAGGAAACTCAGGAGTCAGAATAATGTAATATTTCAGTTGTATTCGTCTTTTGAAWTTGATTTTTTACAGACATCTGATAAATCGAATACTGATATCTCCTCTCATATTTCGTCTGGTCAATTAAGTGAAGCCGAATATTTCGAAGATACACTTCTTACTACAAAAGAGGAAAGAGTTGGCTTGAATTCAATAGAGGCAAAAGTGAAGAAGGAGCCCGAAGTCCGGGAGTACCGGAGAACTCTTCGTTCATCCGGAAAACTAGTTACGCTAGATATTACCCAAAATGGTTCTCCAGCTGGAACAGATGAGTGTATCGAAAGCTCCAATTCACCAATTCCGAAGCCTATAATTAAATCAACTAAGGATGTCAAGTTGAAGTCAAATCGGAAAGTAGTCTTCCGCGAAAACGTAATATCTCTTATAACTCTATCCTACCATCATCTCATTTTTAGCAGGAAGGACAACTCCACACTATAATACACGAAATATCTCGCGAATCATCATACGAGACTGTTCCAGAAGTAGAGAAAAAAGTGAAATATGAAACGAAACCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>372 249 248 131</canonical_bands>
                <polymorphic_bands>379 372 249</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>248 208 173 141 66 65 60 16 15 8</canonical_bands>
                <polymorphic_bands>314 208 173 141 65 60 16 15 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACATTGAAAAAGTTGAAGA</pcr_primer_p1>
		<pcr_primer_p2>CAGACGAAATATGAGAGGAGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAACATTGAAAAAGTTGAAGAATATATTCCGTCGGAGCCAGTTCATCGTATGAAGAGGAAAATCAAAAACAGTCCAGTGCATGAATCTAAGGTGGCTGAAGAGCCTAGTTCCCCTGAACAGAGGGTGACGAAAAGGAAACTCAGGAGTCAGAATAATGTAATATTTCAGTTGTATTCGTCTTTTGAATTTGATTTTTTACAGACATCTGATAAATCGAATACTGATATCTCCTCTCATATTTCGTCTG</canonical_amplicon>
		<polymorphic_amplicon>AAAAACATTGAAAAAGTTGAAGAATATATTCCGTCGGAGCCAGTTCATCGTATGAAGAGGAAAATCAAAAACAGTCCAGTGCATGAATCTAAGGTGGCTGAAGAGCCTAGTTCCCCTGAACAGAGGGTGACGAAAAGGAAACTCAGGAGTCAGAATAATGTAATATTTCAGTTGTATTCGTCTTTTGAAWTTGATTTTTTACAGACATCTGATAAATCGAATACTGATATCTCCTCTCATATTTCGTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10751</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>716912</contig_pos>
        <strand>+</strand>
        <context>ATGAATCTAA[C/G]GTGGCTGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTTCATCGTATGAAGAGGAAAATCAAAAACAGTCCAGTGCATGAATCTAA</left_flank>
        <right_flank>GTGGCTGAAGAGCCTAGTTCCCCTGAACAGAGGGTGACGAAAAGGAAACT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTTTGCCCTTGTAGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCGTCCCACACGTTCAACTCCTCGAGAGGCATATTTAAACGAAATTTCGAGAACATTATTTATTCATGTCCCCCCACCTTTAAAAAGGTATCTGCAAACTGTATTTAACAATTCAGATAATAAGTACTGATCACTCATCTGAACAGTTTGCTTCCCGCGGAATGCTTCGTTCTTCAACTAAGGAACAAGCCTATTCAGCCGAGCTCAAACTCACTCGTTTCAGAAGACACCGCACAACTGCTCGTCTGTTCTCTCTATATCTTTCGTTGCAGTAATATCAATAATTTTCAGCACTTCAAATTTCAACTGATAGTTTTGATTTCAATCAAAAGACATTGGAAGAAGATGTCAAGGACATCAAAAACATTGAAAAAGTTGAAGAATATATTCCGTCGGAGCCAGTTCATCGTATGAAGAGGAAAATCAAAAACAGTCCAGTGCATGAATCTAAGGTGGCTGAAGAGCCTAGTTCCCCTGAACAGAGGGTGACGAAAAGGAAACTCAGGAGTCAGAATAATGTAATATTTCAGTTGTATTCGTCTTTTGAATTTGATTTTTTACAGACATCTGATAAATCGAATACTGATATCTCCTCTCATATTTCGTCTGGTCAATTAAGTGAAGCCGAATATTTCGAAGATACACTTCTTACTACAAAAGAGGAAAGAGTTGGCTTGAATTCAATAGAGGCAAAAGTGAAGAAGGAGCCCGAAGTCCGGGAGTACCGGAGAACTCTTCGTTCATCCGGAAAACTAGTTACGCTAGATATTACCCAAAATGGTTCTCCAGCTGGAACAGATGAGTGTATCGAAAGCTCCAATTCACCAATTCCGAAGCCTATAATTAAATCAACTAAGGATGTCAAGTTGAAGTCAAATCGGAAAGTAGTCTTCCGCGAAAACGTAATATCTCTTATAACTCTATCCTACCATCATCTCATTTTTAGCAGGAA</canonical>
            <polymorphic>CTCTTTGCCCTTGTAGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCGTCCCACACGTTCAACTCCTCGAGAGGCATATTTAAACGAAATTTCGAGAACATTATTTATTCATGTCCCCCCACCTTTAAAAAGGTATCTGCAAACTGTATTTAACAATTCAGATAATAAGTACTGATCACTCATCTGAACAGTTTGCTTCCCGCGGAATGCTTCGTTCTTCAACTAAGGAACAAGCCTATTCAGCCGAGCTCAAACTCACTCGTTTCAGAAGACACCGCACAACTGCTCGTCTGTTCTCTCTATATCTTTCGTTGCAGTAATATCAATAATTTTCAGCACTTCAAATTTCAACTGATAGTTTTGATTTCAATCAAAAGACATTGGAAGAAGATGTCAAGGACATCAAAAACATTGAAAAAGTTGAAGAATATATTCCGTCGGAGCCAGTTCATCGTATGAAGAGGAAAATCAAAAACAGTCCAGTGCATGAATCTAASGTGGCTGAAGAGCCTAGTTCCCCTGAACAGAGGGTGACGAAAAGGAAACTCAGGAGTCAGAATAATGTAATATTTCAGTTGTATTCGTCTTTTGAATTTGATTTTTTACAGACATCTGATAAATCGAATACTGATATCTCCTCTCATATTTCGTCTGGTCAATTAAGTGAAGCCGAATATTTCGAAGATACACTTCTTACTACAAAAGAGGAAAGAGTTGGCTTGAATTCAATAGAGGCAAAAGTGAAGAAGGAGCCCGAAGTCCGGGAGTACCGGAGAACTCTTCGTTCATCCGGAAAACTAGTTACGCTAGATATTACCCAAAATGGTTCTCCAGCTGGAACAGATGAGTGTATCGAAAGCTCCAATTCACCAATTCCGAAGCCTATAATTAAATCAACTAAGGATGTCAAGTTGAAGTCAAATCGGAAAGTAGTCTTCCGCGAAAACGTAATATCTCTTATAACTCTATCCTACCATCATCTCATTTTTAGCAGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>352 270 209 99 53 17</canonical_bands>
                <polymorphic_bands>352 323 209 99 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACATTGAAAAAGTTGAAGA</pcr_primer_p1>
		<pcr_primer_p2>CAGACGAAATATGAGAGGAGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAACATTGAAAAAGTTGAAGAATATATTCCGTCGGAGCCAGTTCATCGTATGAAGAGGAAAATCAAAAACAGTCCAGTGCATGAATCTAAGGTGGCTGAAGAGCCTAGTTCCCCTGAACAGAGGGTGACGAAAAGGAAACTCAGGAGTCAGAATAATGTAATATTTCAGTTGTATTCGTCTTTTGAATTTGATTTTTTACAGACATCTGATAAATCGAATACTGATATCTCCTCTCATATTTCGTCTG</canonical_amplicon>
		<polymorphic_amplicon>AAAAACATTGAAAAAGTTGAAGAATATATTCCGTCGGAGCCAGTTCATCGTATGAAGAGGAAAATCAAAAACAGTCCAGTGCATGAATCTAASGTGGCTGAAGAGCCTAGTTCCCCTGAACAGAGGGTGACGAAAAGGAAACTCAGGAGTCAGAATAATGTAATATTTCAGTTGTATTCGTCTTTTGAATTTGATTTTTTACAGACATCTGATAAATCGAATACTGATATCTCCTCTCATATTTCGTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10752</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>716792</contig_pos>
        <strand>+</strand>
        <context>TCAATCAAAA[C/G]ACATTGGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAATTTTCAGCACTTCAAATTTCAACTGATAGTTTTGATTTCAATCAAAA</left_flank>
        <right_flank>ACATTGGAAGAAGATGTCAAGGACATCAAAAACATTGAAAAAGTTGAAGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTAATGTCACTCCGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGACCGCTTTCTCTTTGCCCTTGTAGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCGTCCCACACGTTCAACTCCTCGAGAGGCATATTTAAACGAAATTTCGAGAACATTATTTATTCATGTCCCCCCACCTTTAAAAAGGTATCTGCAAACTGTATTTAACAATTCAGATAATAAGTACTGATCACTCATCTGAACAGTTTGCTTCCCGCGGAATGCTTCGTTCTTCAACTAAGGAACAAGCCTATTCAGCCGAGCTCAAACTCACTCGTTTCAGAAGACACCGCACAACTGCTCGTCTGTTCTCTCTATATCTTTCGTTGCAGTAATATCAATAATTTTCAGCACTTCAAATTTCAACTGATAGTTTTGATTTCAATCAAAAGACATTGGAAGAAGATGTCAAGGACATCAAAAACATTGAAAAAGTTGAAGAATATATTCCGTCGGAGCCAGTTCATCGTATGAAGAGGAAAATCAAAAACAGTCCAGTGCATGAATCTAAGGTGGCTGAAGAGCCTAGTTCCCCTGAACAGAGGGTGACGAAAAGGAAACTCAGGAGTCAGAATAATGTAATATTTCAGTTGTATTCGTCTTTTGAATTTGATTTTTTACAGACATCTGATAAATCGAATACTGATATCTCCTCTCATATTTCGTCTGGTCAATTAAGTGAAGCCGAATATTTCGAAGATACACTTCTTACTACAAAAGAGGAAAGAGTTGGCTTGAATTCAATAGAGGCAAAAGTGAAGAAGGAGCCCGAAGTCCGGGAGTACCGGAGAACTCTTCGTTCATCCGGAAAACTAGTTACGCTAGATATTACCCAAAATGGTTCTCCAGCTGGAACAGATGAGTGTATCGAAAGCTCCAATTCACCAATTCC</canonical>
            <polymorphic>TTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTAATGTCACTCCGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGACCGCTTTCTCTTTGCCCTTGTAGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCGTCCCACACGTTCAACTCCTCGAGAGGCATATTTAAACGAAATTTCGAGAACATTATTTATTCATGTCCCCCCACCTTTAAAAAGGTATCTGCAAACTGTATTTAACAATTCAGATAATAAGTACTGATCACTCATCTGAACAGTTTGCTTCCCGCGGAATGCTTCGTTCTTCAACTAAGGAACAAGCCTATTCAGCCGAGCTCAAACTCACTCGTTTCAGAAGACACCGCACAACTGCTCGTCTGTTCTCTCTATATCTTTCGTTGCAGTAATATCAATAATTTTCAGCACTTCAAATTTCAACTGATAGTTTTGATTTCAATCAAAASACATTGGAAGAAGATGTCAAGGACATCAAAAACATTGAAAAAGTTGAAGAATATATTCCGTCGGAGCCAGTTCATCGTATGAAGAGGAAAATCAAAAACAGTCCAGTGCATGAATCTAAGGTGGCTGAAGAGCCTAGTTCCCCTGAACAGAGGGTGACGAAAAGGAAACTCAGGAGTCAGAATAATGTAATATTTCAGTTGTATTCGTCTTTTGAATTTGATTTTTTACAGACATCTGATAAATCGAATACTGATATCTCCTCTCATATTTCGTCTGGTCAATTAAGTGAAGCCGAATATTTCGAAGATACACTTCTTACTACAAAAGAGGAAAGAGTTGGCTTGAATTCAATAGAGGCAAAAGTGAAGAAGGAGCCCGAAGTCCGGGAGTACCGGAGAACTCTTCGTTCATCCGGAAAACTAGTTACGCTAGATATTACCCAAAATGGTTCTCCAGCTGGAACAGATGAGTGTATCGAAAGCTCCAATTCACCAATTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAATAATTTTCAGCACTTCAA</pcr_primer_p1>
		<pcr_primer_p2>CATTATTCTGACTCCTGAGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATCAATAATTTTCAGCACTTCAAATTTCAACTGATAGTTTTGATTTCAATCAAAAGACATTGGAAGAAGATGTCAAGGACATCAAAAACATTGAAAAAGTTGAAGAATATATTCCGTCGGAGCCAGTTCATCGTATGAAGAGGAAAATCAAAAACAGTCCAGTGCATGAATCTAAGGTGGCTGAAGAGCCTAGTTCCCCTGAACAGAGGGTGACGAAAAGGAAACTCAGGAGTCAGAATAATG</canonical_amplicon>
		<polymorphic_amplicon>ATCAATAATTTTCAGCACTTCAAATTTCAACTGATAGTTTTGATTTCAATCAAAASACATTGGAAGAAGATGTCAAGGACATCAAAAACATTGAAAAAGTTGAAGAATATATTCCGTCGGAGCCAGTTCATCGTATGAAGAGGAAAATCAAAAACAGTCCAGTGCATGAATCTAAGGTGGCTGAAGAGCCTAGTTCCCCTGAACAGAGGGTGACGAAAAGGAAACTCAGGAGTCAGAATAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10753</snp_id>
        <super_contig>c005500930.Contig1</super_contig>
        <contig_pos>36415</contig_pos>
        <strand></strand>
        <context>TTTTTTCCTT[C/T]TCTTATCAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAAACTTGTACCATTTTGGACTCCAAATCTTTCATCTTCTTTTTTCCTT</left_flank>
        <right_flank>TCTTATCAATCACCTCTTTTTTAATTTTTCAAAAAACATTGAACCTGTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTAGAGACGCCAGACAACGAGACACTCTAACTGTCTGCGTCTCTTCGAAACTTCAAATAGATGTATCTCGGGTTCTAGAAGAGCTAGAAACGTGATTTATTTTTCGAAAAACATTACTGAATCTCGGAATCTTATTGTGTGCCAAAGTACTGTATATTTGTAACTTTCAGGTCTCAAAAATGTTTTTGAATTTTTGAGTTTTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCCAAATCTTTCATCTTCTTTTTTCCTTCTCTTATCAATCACCTCTTTTTTAATTTTTCAAAAAACATTGAACCTGTTAACTACTTCCAATTATTCCTATAAAAGAGACCCCATTATTCCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAATAATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTTCTCCAAGATTTCCATCAAAACCTTTAAGCTCCGCCCACAATGTCAACCCTTACTATTCTTATCGCTATGGCAATGGTTTTGATGGTATCAGCGGGACCATACGGATACCGAAATTATGGATACAACAATGGCTACCGTAACCAGTATGCTACTCCAAACTATTACAATCGTGGATATGGATATCAAGGATACCGTAGTCCATCCTACGGTAACTATAATTATAATAATAATTACTATTATCAAAACTCTTATGCTCAACAACCCAGCTATTCCTATTCGAATGGAA</canonical>
            <polymorphic>GGCTAGAGACGCCAGACAACGAGACACTCTAACTGTCTGCGTCTCTTCGAAACTTCAAATAGATGTATCTCGGGTTCTAGAAGAGCTAGAAACGTGATTTATTTTTCGAAAAACATTACTGAATCTCGGAATCTTATTGTGTGCCAAAGTACTGTATATTTGTAACTTTCAGGTCTCAAAAATGTTTTTGAATTTTTGAGTTTTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCCAAATCTTTCATCTTCTTTTTTCCTTYTCTTATCAATCACCTCTTTTTTAATTTTTCAAAAAACATTGAACCTGTTAACTACTTCCAATTATTCCTATAAAAGAGACCCCATTATTCCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAATAATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTTCTCCAAGATTTCCATCAAAACCTTTAAGCTCCGCCCACAATGTCAACCCTTACTATTCTTATCGCTATGGCAATGGTTTTGATGGTATCAGCGGGACCATACGGATACCGAAATTATGGATACAACAATGGCTACCGTAACCAGTATGCTACTCCAAACTATTACAATCGTGGATATGGATATCAAGGATACCGTAGTCCATCCTACGGTAACTATAATTATAATAATAATTACTATTATCAAAACTCTTATGCTCAACAACCCAGCTATTCCTATTCGAATGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTTGATTGTCGTAAAATAGACT</pcr_primer_p1>
		<pcr_primer_p2>GGAAGTAGTTAACAGGTTCAATG</pcr_primer_p2>
		<pcr_amplicon_size>357</pcr_amplicon_size>
		<canonical_amplicon>TTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCCAAATCTTTCATCTTCTTTTTTCCTTCTCTTATCAATCACCTCTTTTTTAATTTTTCAAAAAACATTGAACCTGTTAACTACTTCC</canonical_amplicon>
		<polymorphic_amplicon>TTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCCAAATCTTTCATCTTCTTTTTTCCTTYTCTTATCAATCACCTCTTTTTTAATTTTTCAAAAAACATTGAACCTGTTAACTACTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10754</snp_id>
        <super_contig>c005500930.Contig1</super_contig>
        <contig_pos>36552</contig_pos>
        <strand></strand>
        <context>CAAAGCCAAA[T/A]AATAAGCTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATTCCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAA</left_flank>
        <right_flank>AATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGTGCCAAAGTACTGTATATTTGTAACTTTCAGGTCTCAAAAATGTTTTTGAATTTTTGAGTTTTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCCAAATCTTTCATCTTCTTTTTTCCTTCTCTTATCAATCACCTCTTTTTTAATTTTTCAAAAAACATTGAACCTGTTAACTACTTCCAATTATTCCTATAAAAGAGACCCCATTATTCCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAATAATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTTCTCCAAGATTTCCATCAAAACCTTTAAGCTCCGCCCACAATGTCAACCCTTACTATTCTTATCGCTATGGCAATGGTTTTGATGGTATCAGCGGGACCATACGGATACCGAAATTATGGATACAACAATGGCTACCGTAACCAGTATGCTACTCCAAACTATTACAATCGTGGATATGGATATCAAGGATACCGTAGTCCATCCTACGGTAACTATAATTATAATAATAATTACTATTATCAAAACTCTTATGCTCAACAACCCAGCTATTCCTATTCGAATGGAATTAATTATGATTCTCAAGGAAACTCATTTATTGGAACAAAAGACAATGGAATTTATCTATTCTGCAATGGAATCGGATGCCCAGGAAGAGGATAATTAGGGATTAATTAGCCCATAATTAACTTTTTGTATATATCT</canonical>
            <polymorphic>TGTGTGCCAAAGTACTGTATATTTGTAACTTTCAGGTCTCAAAAATGTTTTTGAATTTTTGAGTTTTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCCAAATCTTTCATCTTCTTTTTTCCTTCTCTTATCAATCACCTCTTTTTTAATTTTTCAAAAAACATTGAACCTGTTAACTACTTCCAATTATTCCTATAAAAGAGACCCCATTATTCCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAAWAATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTTCTCCAAGATTTCCATCAAAACCTTTAAGCTCCGCCCACAATGTCAACCCTTACTATTCTTATCGCTATGGCAATGGTTTTGATGGTATCAGCGGGACCATACGGATACCGAAATTATGGATACAACAATGGCTACCGTAACCAGTATGCTACTCCAAACTATTACAATCGTGGATATGGATATCAAGGATACCGTAGTCCATCCTACGGTAACTATAATTATAATAATAATTACTATTATCAAAACTCTTATGCTCAACAACCCAGCTATTCCTATTCGAATGGAATTAATTATGATTCTCAAGGAAACTCATTTATTGGAACAAAAGACAATGGAATTTATCTATTCTGCAATGGAATCGGATGCCCAGGAAGAGGATAATTAGGGATTAATTAGCCCATAATTAACTTTTTGTATATATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCCAAATCTTTCATCTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGCTGAGGCTTATTTATACCAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACTCCAAATCTTTCATCTTCTTTTTTCCTTCTCTTATCAATCACCTCTTTTTTAATTTTTCAAAAAACATTGAACCTGTTAACTACTTCCAATTATTCCTATAAAAGAGACCCCATTATTCCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAATAATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTT</canonical_amplicon>
		<polymorphic_amplicon>ACTCCAAATCTTTCATCTTCTTTTTTCCTTCTCTTATCAATCACCTCTTTTTTAATTTTTCAAAAAACATTGAACCTGTTAACTACTTCCAATTATTCCTATAAAAGAGACCCCATTATTCCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAAWAATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10755</snp_id>
        <super_contig>c005500930.Contig1</super_contig>
        <contig_pos>36630</contig_pos>
        <strand></strand>
        <context>GCCTCAGCTT[C/T]TCCAAGATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTT</left_flank>
        <right_flank>TCCAAGATTTCCATCAAAACCTTTAAGCTCCGCCCACAATGTCAACCCTT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCCAAATCTTTCATCTTCTTTTTTCCTTCTCTTATCAATCACCTCTTTTTTAATTTTTCAAAAAACATTGAACCTGTTAACTACTTCCAATTATTCCTATAAAAGAGACCCCATTATTCCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAATAATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTTCTCCAAGATTTCCATCAAAACCTTTAAGCTCCGCCCACAATGTCAACCCTTACTATTCTTATCGCTATGGCAATGGTTTTGATGGTATCAGCGGGACCATACGGATACCGAAATTATGGATACAACAATGGCTACCGTAACCAGTATGCTACTCCAAACTATTACAATCGTGGATATGGATATCAAGGATACCGTAGTCCATCCTACGGTAACTATAATTATAATAATAATTACTATTATCAAAACTCTTATGCTCAACAACCCAGCTATTCCTATTCGAATGGAATTAATTATGATTCTCAAGGAAACTCATTTATTGGAACAAAAGACAATGGAATTTATCTATTCTGCAATGGAATCGGATGCCCAGGAAGAGGATAATTAGGGATTAATTAGCCCATAATTAACTTTTTGTATATATCTTTTTTTTTCCTAAAAACGGGTCGAAATTTTCTAATAATTTTTGCTCGCTATTTAATAAGTTTAATAATAAAGGTTTCA</canonical>
            <polymorphic>TAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCCAAATCTTTCATCTTCTTTTTTCCTTCTCTTATCAATCACCTCTTTTTTAATTTTTCAAAAAACATTGAACCTGTTAACTACTTCCAATTATTCCTATAAAAGAGACCCCATTATTCCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAATAATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTTYTCCAAGATTTCCATCAAAACCTTTAAGCTCCGCCCACAATGTCAACCCTTACTATTCTTATCGCTATGGCAATGGTTTTGATGGTATCAGCGGGACCATACGGATACCGAAATTATGGATACAACAATGGCTACCGTAACCAGTATGCTACTCCAAACTATTACAATCGTGGATATGGATATCAAGGATACCGTAGTCCATCCTACGGTAACTATAATTATAATAATAATTACTATTATCAAAACTCTTATGCTCAACAACCCAGCTATTCCTATTCGAATGGAATTAATTATGATTCTCAAGGAAACTCATTTATTGGAACAAAAGACAATGGAATTTATCTATTCTGCAATGGAATCGGATGCCCAGGAAGAGGATAATTAGGGATTAATTAGCCCATAATTAACTTTTTGTATATATCTTTTTTTTTCCTAAAAACGGGTCGAAATTTTCTAATAATTTTTGCTCGCTATTTAATAAGTTTAATAATAAAGGTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATTCCATTAAAAAGACAATAA</pcr_primer_p1>
		<pcr_primer_p2>GTTGTATCCATAATTTCGGTATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAATAATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTTCTCCAAGATTTCCATCAAAACCTTTAAGCTCCGCCCACAATGTCAACCCTTACTATTCTTATCGCTATGGCAATGGTTTTGATGGTATCAGCGGGACCATACGGATACCGAAATTATGGATACAAC</canonical_amplicon>
		<polymorphic_amplicon>CCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAATAATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTTYTCCAAGATTTCCATCAAAACCTTTAAGCTCCGCCCACAATGTCAACCCTTACTATTCTTATCGCTATGGCAATGGTTTTGATGGTATCAGCGGGACCATACGGATACCGAAATTATGGATACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10756</snp_id>
        <super_contig>c005500930.Contig1</super_contig>
        <contig_pos>36692</contig_pos>
        <strand></strand>
        <context>CTATTCTTAT[C/T]GCTATGGCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATCAAAACCTTTAAGCTCCGCCCACAATGTCAACCCTTACTATTCTTAT</left_flank>
        <right_flank>GCTATGGCAATGGTTTTGATGGTATCAGCGGGACCATACGGATACCGAAA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCCAAATCTTTCATCTTCTTTTTTCCTTCTCTTATCAATCACCTCTTTTTTAATTTTTCAAAAAACATTGAACCTGTTAACTACTTCCAATTATTCCTATAAAAGAGACCCCATTATTCCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAATAATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTTCTCCAAGATTTCCATCAAAACCTTTAAGCTCCGCCCACAATGTCAACCCTTACTATTCTTATCGCTATGGCAATGGTTTTGATGGTATCAGCGGGACCATACGGATACCGAAATTATGGATACAACAATGGCTACCGTAACCAGTATGCTACTCCAAACTATTACAATCGTGGATATGGATATCAAGGATACCGTAGTCCATCCTACGGTAACTATAATTATAATAATAATTACTATTATCAAAACTCTTATGCTCAACAACCCAGCTATTCCTATTCGAATGGAATTAATTATGATTCTCAAGGAAACTCATTTATTGGAACAAAAGACAATGGAATTTATCTATTCTGCAATGGAATCGGATGCCCAGGAAGAGGATAATTAGGGATTAATTAGCCCATAATTAACTTTTTGTATATATCTTTTTTTTTCCTAAAAACGGGTCGAAATTTTCTAATAATTTTTGCTCGCTATTTAATAAGTTTAATAATAAAGGTTTCATATTAAAAATTCCAATTAGGTTCTAAAACATTGGAAAATCTGAAAAAATAATTATAGACTGA</canonical>
            <polymorphic>CGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCCAAATCTTTCATCTTCTTTTTTCCTTCTCTTATCAATCACCTCTTTTTTAATTTTTCAAAAAACATTGAACCTGTTAACTACTTCCAATTATTCCTATAAAAGAGACCCCATTATTCCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAATAATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTTCTCCAAGATTTCCATCAAAACCTTTAAGCTCCGCCCACAATGTCAACCCTTACTATTCTTATYGCTATGGCAATGGTTTTGATGGTATCAGCGGGACCATACGGATACCGAAATTATGGATACAACAATGGCTACCGTAACCAGTATGCTACTCCAAACTATTACAATCGTGGATATGGATATCAAGGATACCGTAGTCCATCCTACGGTAACTATAATTATAATAATAATTACTATTATCAAAACTCTTATGCTCAACAACCCAGCTATTCCTATTCGAATGGAATTAATTATGATTCTCAAGGAAACTCATTTATTGGAACAAAAGACAATGGAATTTATCTATTCTGCAATGGAATCGGATGCCCAGGAAGAGGATAATTAGGGATTAATTAGCCCATAATTAACTTTTTGTATATATCTTTTTTTTTCCTAAAAACGGGTCGAAATTTTCTAATAATTTTTGCTCGCTATTTAATAAGTTTAATAATAAAGGTTTCATATTAAAAATTCCAATTAGGTTCTAAAACATTGGAAAATCTGAAAAAATAATTATAGACTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATTCCATTAAAAAGACAATAA</pcr_primer_p1>
		<pcr_primer_p2>GTTGTATCCATAATTTCGGTATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAATAATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTTCTCCAAGATTTCCATCAAAACCTTTAAGCTCCGCCCACAATGTCAACCCTTACTATTCTTATCGCTATGGCAATGGTTTTGATGGTATCAGCGGGACCATACGGATACCGAAATTATGGATACAAC</canonical_amplicon>
		<polymorphic_amplicon>CCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAATAATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTTCTCCAAGATTTCCATCAAAACCTTTAAGCTCCGCCCACAATGTCAACCCTTACTATTCTTATYGCTATGGCAATGGTTTTGATGGTATCAGCGGGACCATACGGATACCGAAATTATGGATACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10781</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>18873</contig_pos>
        <strand>+</strand>
        <context>TGTTCACCGT[A/G]TTTTGTCTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCATCTACAAAGAACTCGACGCCGCTTATCCAGACTCAATGTTCACCGT</left_flank>
        <right_flank>TTTTGTCTGAAAAATTCCACGTCATCGTATCAAGCAGATGCGAAGAGGTA</right_flank>
        <qual_score>146</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACAAATTTTTTATAGCTTTCACAAGAACCAAGATAAACCAGGTCAAAGTCAAGAGATCGGCAACCGAGCTCATCCGGCAAGCGCCGACTTTTCAATTTTGAGCCGAACTGCTCTGAAAGACATCAAAAAGTGATCGATCAACTGATAAAATGTTTATCATAATATCAGCAATATTTTATCAGTTTACAAGTTTTTGATATCTTCATCAGAAACCGAGATAAAATGACCCAAAGTTGGTAGCTTGGATAGCACTCGATGAGAGTGTGTATAAAATGATAAGATTGGTTTTTAAAACAATTCCTGGAACATCATACATATAACAATATTTACATCATTCTGTAGCCCTGAAAATTTCCAACATTTTAAATTTAACAATCTGAAGGATCCCTTAAGAATGAGCAATGATTTCCAGCACATCGAAATGTCCTCCTTGAAATCGAGCCGTGAAGCCATCTACAAAGAACTCGACGCCGCTTATCCAGACTCAATGTTCACCGTGTTTTGTCTGAAAAATTCCACGTCATCGTATCAAGCAGATGCGAAGAGGTACTGTATGGAAAAGAGCAAGGATCGCATGTGCTATGTTTTCGAATTTTAACACTCTGGAAATTTTTTATTATTTTGAAAATTGAACTTATGCACCTAATTTTAATAAATATTTTACATCAATTTTGTTCTGTGTTTATTGAATCTTGAAGTTGAGAGTTCAAATTTTGAACTTTAAAAGTCCAATTCATGTTTTGCAGATTCTGGAAAAGAAGCTGAAATATCAAACTTTAAAATAGAACATTTCAAAATTTCTAAGAAAACCCACACTAACCGTCAACTTTGAGCTCAATTATCTCGCTTCCTATAAGAGATATCATAAAGTGATAAACTGATAAAATGTTGCTGATATCATGGTGAACACTTTATCAGTCGACAAATTTTTAATATCTTTAACGAAAACTGAGATAAATCAACTCAAAGTTGACAGCTATTAAGCCCTTCTATCACAGG</canonical>
            <polymorphic>GACAAATTTTTTATAGCTTTCACAAGAACCAAGATAAACCAGGTCAAAGTCAAGAGATCGGCAACCGAGCTCATCCGGCAAGCGCCGACTTTTCAATTTTGAGCCGAACTGCTCTGAAAGACATCAAAAAGTGATCGATCAACTGATAAAATGTTTATCATAATATCAGCAATATTTTATCAGTTTACAAGTTTTTGATATCTTCATCAGAAACCGAGATAAAATGACCCAAAGTTGGTAGCTTGGATAGCACTCGATGAGAGTGTGTATAAAATGATAAGATTGGTTTTTAAAACAATTCCTGGAACATCATACATATAACAATATTTACATCATTCTGTAGCCCTGAAAATTTCCAACATTTTAAATTTAACAATCTGAAGGATCCCTTAAGAATGAGCAATGATTTCCAGCACATCGAAATGTCCTCCTTGAAATCGAGCCGTGAAGCCATCTACAAAGAACTCGACGCCGCTTATCCAGACTCAATGTTCACCGTRTTTTGTCTGAAAAATTCCACGTCATCGTATCAAGCAGATGCGAAGAGGTACTGTATGGAAAAGAGCAAGGATCGCATGTGCTATGTTTTCGAATTTTAACACTCTGGAAATTTTTTATTATTTTGAAAATTGAACTTATGCACCTAATTTTAATAAATATTTTACATCAATTTTGTTCTGTGTTTATTGAATCTTGAAGTTGAGAGTTCAAATTTTGAACTTTAAAAGTCCAATTCATGTTTTGCAGATTCTGGAAAAGAAGCTGAAATATCAAACTTTAAAATAGAACATTTCAAAATTTCTAAGAAAACCCACACTAACCGTCAACTTTGAGCTCAATTATCTCGCTTCCTATAAGAGATATCATAAAGTGATAAACTGATAAAATGTTGCTGATATCATGGTGAACACTTTATCAGTCGACAAATTTTTAATATCTTTAACGAAAACTGAGATAAATCAACTCAAAGTTGACAGCTATTAAGCCCTTCTATCACAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>148 132 119 111 86 61 57 48 41 40 33 32 22 21 19 13 5 4 4 2 2</canonical_bands>
                <polymorphic_bands>148 132 119 111 86 61 57 48 41 40 33 32 24 22 21 13 4 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGAAGCCATCTACAAAGAACT</pcr_primer_p1>
		<pcr_primer_p2>AGATTCAATAAACACAGAACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGAAGCCATCTACAAAGAACTCGACGCCGCTTATCCAGACTCAATGTTCACCGTGTTTTGTCTGAAAAATTCCACGTCATCGTATCAAGCAGATGCGAAGAGGTACTGTATGGAAAAGAGCAAGGATCGCATGTGCTATGTTTTCGAATTTTAACACTCTGGAAATTTTTTATTATTTTGAAAATTGAACTTATGCACCTAATTTTAATAAATATTTTACATCAATTTTGTTCTGTGTTTATTGAATCT</canonical_amplicon>
		<polymorphic_amplicon>GTGAAGCCATCTACAAAGAACTCGACGCCGCTTATCCAGACTCAATGTTCACCGTRTTTTGTCTGAAAAATTCCACGTCATCGTATCAAGCAGATGCGAAGAGGTACTGTATGGAAAAGAGCAAGGATCGCATGTGCTATGTTTTCGAATTTTAACACTCTGGAAATTTTTTATTATTTTGAAAATTGAACTTATGCACCTAATTTTAATAAATATTTTACATCAATTTTGTTCTGTGTTTATTGAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10782</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>18992</contig_pos>
        <strand>+</strand>
        <context>AATTTTTTAT[A/T]ATTTTGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGATCGCATGTGCTATGTTTTCGAATTTTAACACTCTGGAAATTTTTTAT</left_flank>
        <right_flank>ATTTTGAAAATTGAACTTATGCACCTAATTTTAATAAATATTTTACATCA</right_flank>
        <qual_score>148</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACATCAAAAAGTGATCGATCAACTGATAAAATGTTTATCATAATATCAGCAATATTTTATCAGTTTACAAGTTTTTGATATCTTCATCAGAAACCGAGATAAAATGACCCAAAGTTGGTAGCTTGGATAGCACTCGATGAGAGTGTGTATAAAATGATAAGATTGGTTTTTAAAACAATTCCTGGAACATCATACATATAACAATATTTACATCATTCTGTAGCCCTGAAAATTTCCAACATTTTAAATTTAACAATCTGAAGGATCCCTTAAGAATGAGCAATGATTTCCAGCACATCGAAATGTCCTCCTTGAAATCGAGCCGTGAAGCCATCTACAAAGAACTCGACGCCGCTTATCCAGACTCAATGTTCACCGTGTTTTGTCTGAAAAATTCCACGTCATCGTATCAAGCAGATGCGAAGAGGTACTGTATGGAAAAGAGCAAGGATCGCATGTGCTATGTTTTCGAATTTTAACACTCTGGAAATTTTTTATTATTTTGAAAATTGAACTTATGCACCTAATTTTAATAAATATTTTACATCAATTTTGTTCTGTGTTTATTGAATCTTGAAGTTGAGAGTTCAAATTTTGAACTTTAAAAGTCCAATTCATGTTTTGCAGATTCTGGAAAAGAAGCTGAAATATCAAACTTTAAAATAGAACATTTCAAAATTTCTAAGAAAACCCACACTAACCGTCAACTTTGAGCTCAATTATCTCGCTTCCTATAAGAGATATCATAAAGTGATAAACTGATAAAATGTTGCTGATATCATGGTGAACACTTTATCAGTCGACAAATTTTTAATATCTTTAACGAAAACTGAGATAAATCAACTCAAAGTTGACAGCTATTAAGCCCTTCTATCACAGGTTCCAAGGCTAGCTTTAAGAGCTCATAACTACGGGTCCAATATACCGGTTTTTATTAAATTTGTATTTTTGAATTTGGCAGGTTTTGTAAATTAAAATCATATTAAATTTGACTTGCTT</canonical>
            <polymorphic>GACATCAAAAAGTGATCGATCAACTGATAAAATGTTTATCATAATATCAGCAATATTTTATCAGTTTACAAGTTTTTGATATCTTCATCAGAAACCGAGATAAAATGACCCAAAGTTGGTAGCTTGGATAGCACTCGATGAGAGTGTGTATAAAATGATAAGATTGGTTTTTAAAACAATTCCTGGAACATCATACATATAACAATATTTACATCATTCTGTAGCCCTGAAAATTTCCAACATTTTAAATTTAACAATCTGAAGGATCCCTTAAGAATGAGCAATGATTTCCAGCACATCGAAATGTCCTCCTTGAAATCGAGCCGTGAAGCCATCTACAAAGAACTCGACGCCGCTTATCCAGACTCAATGTTCACCGTGTTTTGTCTGAAAAATTCCACGTCATCGTATCAAGCAGATGCGAAGAGGTACTGTATGGAAAAGAGCAAGGATCGCATGTGCTATGTTTTCGAATTTTAACACTCTGGAAATTTTTTATWATTTTGAAAATTGAACTTATGCACCTAATTTTAATAAATATTTTACATCAATTTTGTTCTGTGTTTATTGAATCTTGAAGTTGAGAGTTCAAATTTTGAACTTTAAAAGTCCAATTCATGTTTTGCAGATTCTGGAAAAGAAGCTGAAATATCAAACTTTAAAATAGAACATTTCAAAATTTCTAAGAAAACCCACACTAACCGTCAACTTTGAGCTCAATTATCTCGCTTCCTATAAGAGATATCATAAAGTGATAAACTGATAAAATGTTGCTGATATCATGGTGAACACTTTATCAGTCGACAAATTTTTAATATCTTTAACGAAAACTGAGATAAATCAACTCAAAGTTGACAGCTATTAAGCCCTTCTATCACAGGTTCCAAGGCTAGCTTTAAGAGCTCATAACTACGGGTCCAATATACCGGTTTTTATTAAATTTGTATTTTTGAATTTGGCAGGTTTTGTAAATTAAAATCATATTAAATTTGACTTGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGAAGCCATCTACAAAGAACT</pcr_primer_p1>
		<pcr_primer_p2>AGATTCAATAAACACAGAACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGAAGCCATCTACAAAGAACTCGACGCCGCTTATCCAGACTCAATGTTCACCGTGTTTTGTCTGAAAAATTCCACGTCATCGTATCAAGCAGATGCGAAGAGGTACTGTATGGAAAAGAGCAAGGATCGCATGTGCTATGTTTTCGAATTTTAACACTCTGGAAATTTTTTATTATTTTGAAAATTGAACTTATGCACCTAATTTTAATAAATATTTTACATCAATTTTGTTCTGTGTTTATTGAATCT</canonical_amplicon>
		<polymorphic_amplicon>GTGAAGCCATCTACAAAGAACTCGACGCCGCTTATCCAGACTCAATGTTCACCGTGTTTTGTCTGAAAAATTCCACGTCATCGTATCAAGCAGATGCGAAGAGGTACTGTATGGAAAAGAGCAAGGATCGCATGTGCTATGTTTTCGAATTTTAACACTCTGGAAATTTTTTATWATTTTGAAAATTGAACTTATGCACCTAATTTTAATAAATATTTTACATCAATTTTGTTCTGTGTTTATTGAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10783</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>19162</contig_pos>
        <strand>+</strand>
        <context>TAAAATAGAA[A/C]ATTTCAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTTTGCAGATTCTGGAAAAGAAGCTGAAATATCAAACTTTAAAATAGAA</left_flank>
        <right_flank>ATTTCAAAATTTCTAAGAAAACCCACACTAACCGTCAACTTTGAGCTCAA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAACAATTCCTGGAACATCATACATATAACAATATTTACATCATTCTGTAGCCCTGAAAATTTCCAACATTTTAAATTTAACAATCTGAAGGATCCCTTAAGAATGAGCAATGATTTCCAGCACATCGAAATGTCCTCCTTGAAATCGAGCCGTGAAGCCATCTACAAAGAACTCGACGCCGCTTATCCAGACTCAATGTTCACCGTGTTTTGTCTGAAAAATTCCACGTCATCGTATCAAGCAGATGCGAAGAGGTACTGTATGGAAAAGAGCAAGGATCGCATGTGCTATGTTTTCGAATTTTAACACTCTGGAAATTTTTTATTATTTTGAAAATTGAACTTATGCACCTAATTTTAATAAATATTTTACATCAATTTTGTTCTGTGTTTATTGAATCTTGAAGTTGAGAGTTCAAATTTTGAACTTTAAAAGTCCAATTCATGTTTTGCAGATTCTGGAAAAGAAGCTGAAATATCAAACTTTAAAATAGAACATTTCAAAATTTCTAAGAAAACCCACACTAACCGTCAACTTTGAGCTCAATTATCTCGCTTCCTATAAGAGATATCATAAAGTGATAAACTGATAAAATGTTGCTGATATCATGGTGAACACTTTATCAGTCGACAAATTTTTAATATCTTTAACGAAAACTGAGATAAATCAACTCAAAGTTGACAGCTATTAAGCCCTTCTATCACAGGTTCCAAGGCTAGCTTTAAGAGCTCATAACTACGGGTCCAATATACCGGTTTTTATTAAATTTGTATTTTTGAATTTGGCAGGTTTTGTAAATTAAAATCATATTAAATTTGACTTGCTTACTTAAAAAATAACAAAAAAACAAGCAGAATACCTATAGTCATTTTTGAAAACAGCTTTCTAGCCGGTGGTGGATCATACTTTTTGAGCCCAATTATCTCGGTTCTTGTGAAAGAAATCAAAAATTTGTCAACTGATAAAATATTGCCGATAATGTCATAAACATTTTAT</canonical>
            <polymorphic>TTAAAACAATTCCTGGAACATCATACATATAACAATATTTACATCATTCTGTAGCCCTGAAAATTTCCAACATTTTAAATTTAACAATCTGAAGGATCCCTTAAGAATGAGCAATGATTTCCAGCACATCGAAATGTCCTCCTTGAAATCGAGCCGTGAAGCCATCTACAAAGAACTCGACGCCGCTTATCCAGACTCAATGTTCACCGTGTTTTGTCTGAAAAATTCCACGTCATCGTATCAAGCAGATGCGAAGAGGTACTGTATGGAAAAGAGCAAGGATCGCATGTGCTATGTTTTCGAATTTTAACACTCTGGAAATTTTTTATTATTTTGAAAATTGAACTTATGCACCTAATTTTAATAAATATTTTACATCAATTTTGTTCTGTGTTTATTGAATCTTGAAGTTGAGAGTTCAAATTTTGAACTTTAAAAGTCCAATTCATGTTTTGCAGATTCTGGAAAAGAAGCTGAAATATCAAACTTTAAAATAGAAMATTTCAAAATTTCTAAGAAAACCCACACTAACCGTCAACTTTGAGCTCAATTATCTCGCTTCCTATAAGAGATATCATAAAGTGATAAACTGATAAAATGTTGCTGATATCATGGTGAACACTTTATCAGTCGACAAATTTTTAATATCTTTAACGAAAACTGAGATAAATCAACTCAAAGTTGACAGCTATTAAGCCCTTCTATCACAGGTTCCAAGGCTAGCTTTAAGAGCTCATAACTACGGGTCCAATATACCGGTTTTTATTAAATTTGTATTTTTGAATTTGGCAGGTTTTGTAAATTAAAATCATATTAAATTTGACTTGCTTACTTAAAAAATAACAAAAAAACAAGCAGAATACCTATAGTCATTTTTGAAAACAGCTTTCTAGCCGGTGGTGGATCATACTTTTTGAGCCCAATTATCTCGGTTCTTGTGAAAGAAATCAAAAATTTGTCAACTGATAAAATATTGCCGATAATGTCATAAACATTTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTCATGTTTTGCAGATTC</pcr_primer_p1>
		<pcr_primer_p2>TATATTGGACCCGTAGTTATGAG</pcr_primer_p2>
		<pcr_amplicon_size>314</pcr_amplicon_size>
		<canonical_amplicon>CAATTCATGTTTTGCAGATTCTGGAAAAGAAGCTGAAATATCAAACTTTAAAATAGAACATTTCAAAATTTCTAAGAAAACCCACACTAACCGTCAACTTTGAGCTCAATTATCTCGCTTCCTATAAGAGATATCATAAAGTGATAAACTGATAAAATGTTGCTGATATCATGGTGAACACTTTATCAGTCGACAAATTTTTAATATCTTTAACGAAAACTGAGATAAATCAACTCAAAGTTGACAGCTATTAAGCCCTTCTATCACAGGTTCCAAGGCTAGCTTTAAGAGCTCATAACTACGGGTCCAATATA</canonical_amplicon>
		<polymorphic_amplicon>CAATTCATGTTTTGCAGATTCTGGAAAAGAAGCTGAAATATCAAACTTTAAAATAGAAMATTTCAAAATTTCTAAGAAAACCCACACTAACCGTCAACTTTGAGCTCAATTATCTCGCTTCCTATAAGAGATATCATAAAGTGATAAACTGATAAAATGTTGCTGATATCATGGTGAACACTTTATCAGTCGACAAATTTTTAATATCTTTAACGAAAACTGAGATAAATCAACTCAAAGTTGACAGCTATTAAGCCCTTCTATCACAGGTTCCAAGGCTAGCTTTAAGAGCTCATAACTACGGGTCCAATATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10784</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>19173</contig_pos>
        <strand>+</strand>
        <context>ATTTCAAAAT[C/T]TCTAAGAAAR</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTGGAAAAGAAGCTGAAATATCAAACTTTAAAATAGAACATTTCAAAAT</left_flank>
        <right_flank>TCTAAGAAAACCCACACTAACCGTCAACTTTGAGCTCAATTATCTCGCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTGGAACATCATACATATAACAATATTTACATCATTCTGTAGCCCTGAAAATTTCCAACATTTTAAATTTAACAATCTGAAGGATCCCTTAAGAATGAGCAATGATTTCCAGCACATCGAAATGTCCTCCTTGAAATCGAGCCGTGAAGCCATCTACAAAGAACTCGACGCCGCTTATCCAGACTCAATGTTCACCGTGTTTTGTCTGAAAAATTCCACGTCATCGTATCAAGCAGATGCGAAGAGGTACTGTATGGAAAAGAGCAAGGATCGCATGTGCTATGTTTTCGAATTTTAACACTCTGGAAATTTTTTATTATTTTGAAAATTGAACTTATGCACCTAATTTTAATAAATATTTTACATCAATTTTGTTCTGTGTTTATTGAATCTTGAAGTTGAGAGTTCAAATTTTGAACTTTAAAAGTCCAATTCATGTTTTGCAGATTCTGGAAAAGAAGCTGAAATATCAAACTTTAAAATAGAACATTTCAAAATTTCTAAGAAAACCCACACTAACCGTCAACTTTGAGCTCAATTATCTCGCTTCCTATAAGAGATATCATAAAGTGATAAACTGATAAAATGTTGCTGATATCATGGTGAACACTTTATCAGTCGACAAATTTTTAATATCTTTAACGAAAACTGAGATAAATCAACTCAAAGTTGACAGCTATTAAGCCCTTCTATCACAGGTTCCAAGGCTAGCTTTAAGAGCTCATAACTACGGGTCCAATATACCGGTTTTTATTAAATTTGTATTTTTGAATTTGGCAGGTTTTGTAAATTAAAATCATATTAAATTTGACTTGCTTACTTAAAAAATAACAAAAAAACAAGCAGAATACCTATAGTCATTTTTGAAAACAGCTTTCTAGCCGGTGGTGGATCATACTTTTTGAGCCCAATTATCTCGGTTCTTGTGAAAGAAATCAAAAATTTGTCAACTGATAAAATATTGCCGATAATGTCATAAACATTTTATTAGTTTACCAT</canonical>
            <polymorphic>CCTGGAACATCATACATATAACAATATTTACATCATTCTGTAGCCCTGAAAATTTCCAACATTTTAAATTTAACAATCTGAAGGATCCCTTAAGAATGAGCAATGATTTCCAGCACATCGAAATGTCCTCCTTGAAATCGAGCCGTGAAGCCATCTACAAAGAACTCGACGCCGCTTATCCAGACTCAATGTTCACCGTGTTTTGTCTGAAAAATTCCACGTCATCGTATCAAGCAGATGCGAAGAGGTACTGTATGGAAAAGAGCAAGGATCGCATGTGCTATGTTTTCGAATTTTAACACTCTGGAAATTTTTTATTATTTTGAAAATTGAACTTATGCACCTAATTTTAATAAATATTTTACATCAATTTTGTTCTGTGTTTATTGAATCTTGAAGTTGAGAGTTCAAATTTTGAACTTTAAAAGTCCAATTCATGTTTTGCAGATTCTGGAAAAGAAGCTGAAATATCAAACTTTAAAATAGAACATTTCAAAATYTCTAAGAAAACCCACACTAACCGTCAACTTTGAGCTCAATTATCTCGCTTCCTATAAGAGATATCATAAAGTGATAAACTGATAAAATGTTGCTGATATCATGGTGAACACTTTATCAGTCGACAAATTTTTAATATCTTTAACGAAAACTGAGATAAATCAACTCAAAGTTGACAGCTATTAAGCCCTTCTATCACAGGTTCCAAGGCTAGCTTTAAGAGCTCATAACTACGGGTCCAATATACCGGTTTTTATTAAATTTGTATTTTTGAATTTGGCAGGTTTTGTAAATTAAAATCATATTAAATTTGACTTGCTTACTTAAAAAATAACAAAAAAACAAGCAGAATACCTATAGTCATTTTTGAAAACAGCTTTCTAGCCGGTGGTGGATCATACTTTTTGAGCCCAATTATCTCGGTTCTTGTGAAAGAAATCAAAAATTTGTCAACTGATAAAATATTGCCGATAATGTCATAAACATTTTATTAGTTTACCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>146 136 132 129 102 86 79 59 50 34 17 16 14</canonical_bands>
                <polymorphic_bands>215 146 136 132 102 79 59 50 34 17 16 14</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>146 132 105 88 79 65 59 50 42 41 31 23 21 19 18 18 17 16 16 14</canonical_bands>
                <polymorphic_bands>146 132 106 105 88 79 59 50 42 31 23 21 19 18 18 17 16 16 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTGGAAAAGAAGCTGAAATA</pcr_primer_p1>
		<pcr_primer_p2>TATATTGGACCCGTAGTTATGAG</pcr_primer_p2>
		<pcr_amplicon_size>296</pcr_amplicon_size>
		<canonical_amplicon>TTCTGGAAAAGAAGCTGAAATATCAAACTTTAAAATAGAACATTTCAAAATTTCTAAGAAAACCCACACTAACCGTCAACTTTGAGCTCAATTATCTCGCTTCCTATAAGAGATATCATAAAGTGATAAACTGATAAAATGTTGCTGATATCATGGTGAACACTTTATCAGTCGACAAATTTTTAATATCTTTAACGAAAACTGAGATAAATCAACTCAAAGTTGACAGCTATTAAGCCCTTCTATCACAGGTTCCAAGGCTAGCTTTAAGAGCTCATAACTACGGGTCCAATATA</canonical_amplicon>
		<polymorphic_amplicon>TTCTGGAAAAGAAGCTGAAATATCAAACTTTAAAATAGAACATTTCAAAATYTCTAAGAAAACCCACACTAACCGTCAACTTTGAGCTCAATTATCTCGCTTCCTATAAGAGATATCATAAAGTGATAAACTGATAAAATGTTGCTGATATCATGGTGAACACTTTATCAGTCGACAAATTTTTAATATCTTTAACGAAAACTGAGATAAATCAACTCAAAGTTGACAGCTATTAAGCCCTTCTATCACAGGTTCCAAGGCTAGCTTTAAGAGCTCATAACTACGGGTCCAATATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10811</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21321</contig_pos>
        <strand>+</strand>
        <context>AGYTYRTTTA[A/G]GCAATTTTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTA</left_flank>
        <right_flank>GCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGATAACTGTTACAGTAACCGAGATAAATGAGCTTTAAGTTAGCGGTCTAGGCGGGCTTCTACTA</canonical>
            <polymorphic>CTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTARGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGATAACTGTTACAGTAACCGAGATAAATGAGCTTTAAGTTAGCGGTCTAGGCGGGCTTCTACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTTCAGTTTGATACAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATATTGGCTTACAACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTARGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10812</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21315</contig_pos>
        <strand>+</strand>
        <context>TCAAAAAGYT[C/T]RTTTARGCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCT</left_flank>
        <right_flank>ATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGATAACTGTTACAGTAACCGAGATAAATGAGCTTTAAGTTAGCGGTCTAGGCGGGCTT</canonical>
            <polymorphic>ATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTYATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGATAACTGTTACAGTAACCGAGATAAATGAGCTTTAAGTTAGCGGTCTAGGCGGGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTTCAGTTTGATACAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATATTGGCTTACAACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTYATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10813</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21313</contig_pos>
        <strand>+</strand>
        <context>TATCAAAAAG[C/T]TYRTTTARGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAG</left_flank>
        <right_flank>TCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGATAACTGTTACAGTAACCGAGATAAATGAGCTTTAAGTTAGCGGTCTAGGCGGGC</canonical>
            <polymorphic>GAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGYTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGATAACTGTTACAGTAACCGAGATAAATGAGCTTTAAGTTAGCGGTCTAGGCGGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>499 221 134 77 44 25</canonical_bands>
                <polymorphic_bands>576 221 134 44 25</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>161 142 94 94 85 84 77 46 44 41 28 25 23 15 11 10 10 10</canonical_bands>
                <polymorphic_bands>161 161 142 94 94 85 46 44 41 28 25 23 15 11 10 10 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTTCAGTTTGATACAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATATTGGCTTACAACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGYTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10815</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21289</contig_pos>
        <strand>+</strand>
        <context>SAGATTWRWC[A/G]AAWWTTCAAM</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATC</left_flank>
        <right_flank>AAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGATAACTGTTACAGTAACCGAGATAAATGAGC</canonical>
            <polymorphic>GGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCRAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGATAACTGTTACAGTAACCGAGATAAATGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTTCAGTTTGATACAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATATTGGCTTACAACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCRAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10816</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21287</contig_pos>
        <strand>+</strand>
        <context>TTSAGATTWR[A/T]CRAAWWTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTA</left_flank>
        <right_flank>CAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGATAACTGTTACAGTAACCGAGATAAATGA</canonical>
            <polymorphic>GAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTAWCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGATAACTGTTACAGTAACCGAGATAAATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTTCAGTTTGATACAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATATTGGCTTACAACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTAWCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10817</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21279</contig_pos>
        <strand>+</strand>
        <context>GRGCGCTTTT[C/G]AGATTWRWCR</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTT</left_flank>
        <right_flank>AGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGATAACTGTTACAGTAACCGAG</canonical>
            <polymorphic>ACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTSAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGATAACTGTTACAGTAACCGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>499 343 158</canonical_bands>
                <polymorphic_bands>842 158</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTTCAGTTTGATACAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATATTGGCTTACAACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTSAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10820</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21262</contig_pos>
        <strand>+</strand>
        <context>GTAAGSMTWM[G/T]KTTTTTGRGC</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCG</left_flank>
        <right_flank>GTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGATAA</canonical>
            <polymorphic>AGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGKGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTCGAG</site>
                <isoschizomers>
                    <enzyme>BssHI</enzyme>
                    <enzyme>PaeR7I</enzyme>
                    <enzyme>SciI</enzyme>
                    <enzyme>Sfr274I</enzyme>
                    <enzyme>SlaI</enzyme>
                    <enzyme>TliI</enzyme>
                    <enzyme>XhoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 333 169</canonical_bands>
                <polymorphic_bands>831 169</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTTCAGTTTGATACAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATATTGGCTTACAACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGKGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10861</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21054</contig_pos>
        <strand>+</strand>
        <context>SGGRYCAWTT[C/G]TAGCCGAGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATT</left_flank>
        <right_flank>TAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTCAATATTTCCCGGATTATTTTGACCTTATAATCTTTAAAATTCGTCTAGTTTCATTTTTCCAGCCATGTCAACACTGGGTCGTAGTAAGACCCCTCAACGGGACGATACCAACAAAAAACCAAGTGTTTTTGAGAAACTTTCTGGAACATTGTCCAGAAAGAAGAAGATTCCAGAAGATGGAGAGCATGATGGACCAGCTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAAT</canonical>
            <polymorphic>TTTTTTCAATATTTCCCGGATTATTTTGACCTTATAATCTTTAAAATTCGTCTAGTTTCATTTTTCCAGCCATGTCAACACTGGGTCGTAGTAAGACCCCTCAACGGGACGATACCAACAAAAAACCAAGTGTTTTTGAGAAACTTTCTGGAACATTGTCCAGAAAGAAGAAGATTCCAGAAGATGGAGAGCATGATGGACCAGCTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTSTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 448 52</canonical_bands>
                <polymorphic_bands>948 52</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCACAACGCTTAATTAGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTATCAAACTGAAGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTSTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10862</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21020</contig_pos>
        <strand>+</strand>
        <context>ATCCCCTTCA[C/T]TTTRAAATAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCA</left_flank>
        <right_flank>TTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTGTGGAATTTTCAGGGTTTTTTTTCTGTTTTTTTTTTCAATATTTCCCGGATTATTTTGACCTTATAATCTTTAAAATTCGTCTAGTTTCATTTTTCCAGCCATGTCAACACTGGGTCGTAGTAAGACCCCTCAACGGGACGATACCAACAAAAAACCAAGTGTTTTTGAGAAACTTTCTGGAACATTGTCCAGAAAGAAGAAGATTCCAGAAGATGGAGAGCATGATGGACCAGCTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAA</canonical>
            <polymorphic>TGTTGTGGAATTTTCAGGGTTTTTTTTCTGTTTTTTTTTTCAATATTTCCCGGATTATTTTGACCTTATAATCTTTAAAATTCGTCTAGTTTCATTTTTCCAGCCATGTCAACACTGGGTCGTAGTAAGACCCCTCAACGGGACGATACCAACAAAAAACCAAGTGTTTTTGAGAAACTTTCTGGAACATTGTCCAGAAAGAAGAAGATTCCAGAAGATGGAGAGCATGATGGACCAGCTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCAYTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>367 107 94 89 83 81 65 52 50 7 3 2</canonical_bands>
                <polymorphic_bands>367 146 107 94 89 83 52 50 7 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCACAACGCTTAATTAGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTATCAAACTGAAGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCAYTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10864</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>22834</contig_pos>
        <strand>+</strand>
        <context>AATTATCAAA[A/T]TATCAAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGCAAATTTGAAGAGCTACCCAACGATATCTAACTCATCAATTATCAAA</left_flank>
        <right_flank>TATCAAAAATCAAATTACAGGACTTCACCGCCATCATCCAACTACTCGTG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAGGGACAACGTCAGAAGCTTCAAATTGTCATTCAAACAGCTAATAGAATTTTGGGGCAACCCAGAGATCAGGAGAAGTGGTCCGCTGATTTGATTCATCAGAAGGTAAGCAAATGTGCTCTATTGAAATGCTTTTAGCTCAAAAGATTGCTAACTTTAGAAGGCTCAAGATCATATGCAATTTGTAGAACATCCCTAAAAGTACTGTAATTTTAAAGCTCCATAACATTGCTCATTTTTATTCGATTGATATGATTTTTAGTGTGTAAAATAGGAAATTTTAAGAGCTACACAACCAAATTTAATTTTTAAAACCTTAAAATGGTATGCCATTTGTAATACATCCCAAAAAGTACTGTGATTTTTTCAAAAAAAAACCGCACTAGTTTCAAAGTCTCATAACATTGCTCAGTTTTATCTGATTTCAATAAATTTTATTTCAAAACATAGCAAATTTGAAGAGCTACCCAACGATATCTAACTCATCAATTATCAAATTATCAAAAATCAAATTACAGGACTTCACCGCCATCATCCAACTACTCGTGCTCATCGCTCTTCACTATCGCGCTCCAATCCGCTTCCCAGACAACGTGGTAGCCAATGTTGTAGTTGCTCAAAAGGAGCACGGACAAGTGAAAACGCATCGAATCACGGAGCAAATCACGACTGTCCAAACCGAGCTCGCACCAAAAGGAACCCGCGATGCCTTCGATACACTTTTCGACTACGGACCCGACAAGTTGGCTCATGTGAAGACGTCGCTTTTGGCGTTCTGTAATAAGCATTTGAATAAGATCAATCTAGAAGTCTCGGATTTGGATTATCAATTCCAGGATGGTGTATTCTTGGTGCTTCTTGTTGGTCTCTTGGAGGGATACTTCGTCCCGCTGTACCATTTCAATTTGCAAGTTCATGGACACGAGGAGAAGGTCAAGAATGTGCAATTTGCGTTTAAGTTGATGGAAGATGCTGGATTGGAGAAGCCAAGAAGTCGT</canonical>
            <polymorphic>AGGAGGGACAACGTCAGAAGCTTCAAATTGTCATTCAAACAGCTAATAGAATTTTGGGGCAACCCAGAGATCAGGAGAAGTGGTCCGCTGATTTGATTCATCAGAAGGTAAGCAAATGTGCTCTATTGAAATGCTTTTAGCTCAAAAGATTGCTAACTTTAGAAGGCTCAAGATCATATGCAATTTGTAGAACATCCCTAAAAGTACTGTAATTTTAAAGCTCCATAACATTGCTCATTTTTATTCGATTGATATGATTTTTAGTGTGTAAAATAGGAAATTTTAAGAGCTACACAACCAAATTTAATTTTTAAAACCTTAAAATGGTATGCCATTTGTAATACATCCCAAAAAGTACTGTGATTTTTTCAAAAAAAAACCGCACTAGTTTCAAAGTCTCATAACATTGCTCAGTTTTATCTGATTTCAATAAATTTTATTTCAAAACATAGCAAATTTGAAGAGCTACCCAACGATATCTAACTCATCAATTATCAAAWTATCAAAAATCAAATTACAGGACTTCACCGCCATCATCCAACTACTCGTGCTCATCGCTCTTCACTATCGCGCTCCAATCCGCTTCCCAGACAACGTGGTAGCCAATGTTGTAGTTGCTCAAAAGGAGCACGGACAAGTGAAAACGCATCGAATCACGGAGCAAATCACGACTGTCCAAACCGAGCTCGCACCAAAAGGAACCCGCGATGCCTTCGATACACTTTTCGACTACGGACCCGACAAGTTGGCTCATGTGAAGACGTCGCTTTTGGCGTTCTGTAATAAGCATTTGAATAAGATCAATCTAGAAGTCTCGGATTTGGATTATCAATTCCAGGATGGTGTATTCTTGGTGCTTCTTGTTGGTCTCTTGGAGGGATACTTCGTCCCGCTGTACCATTTCAATTTGCAAGTTCATGGACACGAGGAGAAGGTCAAGAATGTGCAATTTGCGTTTAAGTTGATGGAAGATGCTGGATTGGAGAAGCCAAGAAGTCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>318 132 127 74 68 53 43 35 29 25 24 22 22 15 8 5</canonical_bands>
                <polymorphic_bands>318 132 127 74 68 53 43 35 29 25 24 23 22 22 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCGCACTAGTTTCAAAGTCT</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTGAGCAACTACAACATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACCGCACTAGTTTCAAAGTCTCATAACATTGCTCAGTTTTATCTGATTTCAATAAATTTTATTTCAAAACATAGCAAATTTGAAGAGCTACCCAACGATATCTAACTCATCAATTATCAAATTATCAAAAATCAAATTACAGGACTTCACCGCCATCATCCAACTACTCGTGCTCATCGCTCTTCACTATCGCGCTCCAATCCGCTTCCCAGACAACGTGGTAGCCAATGTTGTAGTTGCTCAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>ACCGCACTAGTTTCAAAGTCTCATAACATTGCTCAGTTTTATCTGATTTCAATAAATTTTATTTCAAAACATAGCAAATTTGAAGAGCTACCCAACGATATCTAACTCATCAATTATCAAAWTATCAAAAATCAAATTACAGGACTTCACCGCCATCATCCAACTACTCGTGCTCATCGCTCTTCACTATCGCGCTCCAATCCGCTTCCCAGACAACGTGGTAGCCAATGTTGTAGTTGCTCAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10865</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>22751</contig_pos>
        <strand>+</strand>
        <context>TTGCTCAGTT[C/T]TATCTGATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCAAAAAAAAACCGCACTAGTTTCAAAGTCTCATAACATTGCTCAGTT</left_flank>
        <right_flank>TATCTGATTTCAATAAATTTTATTTCAAAACATAGCAAATTTGAAGAGCT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATTCGGGTGAGAAATTTGGCGGGAATTTGAAGTTTTGAATCTTTTATTTTCAGATCGAAGTTCCAGAAGTGTCCCAATCGGAGGAGGGACAACGTCAGAAGCTTCAAATTGTCATTCAAACAGCTAATAGAATTTTGGGGCAACCCAGAGATCAGGAGAAGTGGTCCGCTGATTTGATTCATCAGAAGGTAAGCAAATGTGCTCTATTGAAATGCTTTTAGCTCAAAAGATTGCTAACTTTAGAAGGCTCAAGATCATATGCAATTTGTAGAACATCCCTAAAAGTACTGTAATTTTAAAGCTCCATAACATTGCTCATTTTTATTCGATTGATATGATTTTTAGTGTGTAAAATAGGAAATTTTAAGAGCTACACAACCAAATTTAATTTTTAAAACCTTAAAATGGTATGCCATTTGTAATACATCCCAAAAAGTACTGTGATTTTTTCAAAAAAAAACCGCACTAGTTTCAAAGTCTCATAACATTGCTCAGTTTTATCTGATTTCAATAAATTTTATTTCAAAACATAGCAAATTTGAAGAGCTACCCAACGATATCTAACTCATCAATTATCAAATTATCAAAAATCAAATTACAGGACTTCACCGCCATCATCCAACTACTCGTGCTCATCGCTCTTCACTATCGCGCTCCAATCCGCTTCCCAGACAACGTGGTAGCCAATGTTGTAGTTGCTCAAAAGGAGCACGGACAAGTGAAAACGCATCGAATCACGGAGCAAATCACGACTGTCCAAACCGAGCTCGCACCAAAAGGAACCCGCGATGCCTTCGATACACTTTTCGACTACGGACCCGACAAGTTGGCTCATGTGAAGACGTCGCTTTTGGCGTTCTGTAATAAGCATTTGAATAAGATCAATCTAGAAGTCTCGGATTTGGATTATCAATTCCAGGATGGTGTATTCTTGGTGCTTCTTGTTGGTCTCTTGGAGGGATACTTCGTCCCGCTGTACCATTTCAATTTGCAAGTTC</canonical>
            <polymorphic>AGATTCGGGTGAGAAATTTGGCGGGAATTTGAAGTTTTGAATCTTTTATTTTCAGATCGAAGTTCCAGAAGTGTCCCAATCGGAGGAGGGACAACGTCAGAAGCTTCAAATTGTCATTCAAACAGCTAATAGAATTTTGGGGCAACCCAGAGATCAGGAGAAGTGGTCCGCTGATTTGATTCATCAGAAGGTAAGCAAATGTGCTCTATTGAAATGCTTTTAGCTCAAAAGATTGCTAACTTTAGAAGGCTCAAGATCATATGCAATTTGTAGAACATCCCTAAAAGTACTGTAATTTTAAAGCTCCATAACATTGCTCATTTTTATTCGATTGATATGATTTTTAGTGTGTAAAATAGGAAATTTTAAGAGCTACACAACCAAATTTAATTTTTAAAACCTTAAAATGGTATGCCATTTGTAATACATCCCAAAAAGTACTGTGATTTTTTCAAAAAAAAACCGCACTAGTTTCAAAGTCTCATAACATTGCTCAGTTYTATCTGATTTCAATAAATTTTATTTCAAAACATAGCAAATTTGAAGAGCTACCCAACGATATCTAACTCATCAATTATCAAATTATCAAAAATCAAATTACAGGACTTCACCGCCATCATCCAACTACTCGTGCTCATCGCTCTTCACTATCGCGCTCCAATCCGCTTCCCAGACAACGTGGTAGCCAATGTTGTAGTTGCTCAAAAGGAGCACGGACAAGTGAAAACGCATCGAATCACGGAGCAAATCACGACTGTCCAAACCGAGCTCGCACCAAAAGGAACCCGCGATGCCTTCGATACACTTTTCGACTACGGACCCGACAAGTTGGCTCATGTGAAGACGTCGCTTTTGGCGTTCTGTAATAAGCATTTGAATAAGATCAATCTAGAAGTCTCGGATTTGGATTATCAATTCCAGGATGGTGTATTCTTGGTGCTTCTTGTTGGTCTCTTGGAGGGATACTTCGTCCCGCTGTACCATTTCAATTTGCAAGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAAATTTTAAGAGCTACACAA</pcr_primer_p1>
		<pcr_primer_p2>AAGTCCTGTAATTTGATTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGGAAATTTTAAGAGCTACACAACCAAATTTAATTTTTAAAACCTTAAAATGGTATGCCATTTGTAATACATCCCAAAAAGTACTGTGATTTTTTCAAAAAAAAACCGCACTAGTTTCAAAGTCTCATAACATTGCTCAGTTTTATCTGATTTCAATAAATTTTATTTCAAAACATAGCAAATTTGAAGAGCTACCCAACGATATCTAACTCATCAATTATCAAATTATCAAAAATCAAATTACAGGACTT</canonical_amplicon>
		<polymorphic_amplicon>AGGAAATTTTAAGAGCTACACAACCAAATTTAATTTTTAAAACCTTAAAATGGTATGCCATTTGTAATACATCCCAAAAAGTACTGTGATTTTTTCAAAAAAAAACCGCACTAGTTTCAAAGTCTCATAACATTGCTCAGTTYTATCTGATTTCAATAAATTTTATTTCAAAACATAGCAAATTTGAAGAGCTACCCAACGATATCTAACTCATCAATTATCAAATTATCAAAAATCAAATTACAGGACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10867</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>22660</contig_pos>
        <strand>+</strand>
        <context>ACCTTAAAAT[A/G]GTATGCCATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAAATTTTAAGAGCTACACAACCAAATTTAATTTTTAAAACCTTAAAAT</left_flank>
        <right_flank>GTATGCCATTTGTAATACATCCCAAAAAGTACTGTGATTTTTTCAAAAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGTTGGCTGATCAAAGAATCGTCGTTCGTCACATCCAGGAGGATCTTTTTGATGGCCAGATTATTCAGAAGCTTTTGGAAAAGTTGGAACAGATTCGGGTGAGAAATTTGGCGGGAATTTGAAGTTTTGAATCTTTTATTTTCAGATCGAAGTTCCAGAAGTGTCCCAATCGGAGGAGGGACAACGTCAGAAGCTTCAAATTGTCATTCAAACAGCTAATAGAATTTTGGGGCAACCCAGAGATCAGGAGAAGTGGTCCGCTGATTTGATTCATCAGAAGGTAAGCAAATGTGCTCTATTGAAATGCTTTTAGCTCAAAAGATTGCTAACTTTAGAAGGCTCAAGATCATATGCAATTTGTAGAACATCCCTAAAAGTACTGTAATTTTAAAGCTCCATAACATTGCTCATTTTTATTCGATTGATATGATTTTTAGTGTGTAAAATAGGAAATTTTAAGAGCTACACAACCAAATTTAATTTTTAAAACCTTAAAATGGTATGCCATTTGTAATACATCCCAAAAAGTACTGTGATTTTTTCAAAAAAAAACCGCACTAGTTTCAAAGTCTCATAACATTGCTCAGTTTTATCTGATTTCAATAAATTTTATTTCAAAACATAGCAAATTTGAAGAGCTACCCAACGATATCTAACTCATCAATTATCAAATTATCAAAAATCAAATTACAGGACTTCACCGCCATCATCCAACTACTCGTGCTCATCGCTCTTCACTATCGCGCTCCAATCCGCTTCCCAGACAACGTGGTAGCCAATGTTGTAGTTGCTCAAAAGGAGCACGGACAAGTGAAAACGCATCGAATCACGGAGCAAATCACGACTGTCCAAACCGAGCTCGCACCAAAAGGAACCCGCGATGCCTTCGATACACTTTTCGACTACGGACCCGACAAGTTGGCTCATGTGAAGACGTCGCTTTTGGCGTTCTGTAATAAGCATTTGAATAAGATCAATCTAGAAGTCTCGGATTTGGAT</canonical>
            <polymorphic>GAGTTGGCTGATCAAAGAATCGTCGTTCGTCACATCCAGGAGGATCTTTTTGATGGCCAGATTATTCAGAAGCTTTTGGAAAAGTTGGAACAGATTCGGGTGAGAAATTTGGCGGGAATTTGAAGTTTTGAATCTTTTATTTTCAGATCGAAGTTCCAGAAGTGTCCCAATCGGAGGAGGGACAACGTCAGAAGCTTCAAATTGTCATTCAAACAGCTAATAGAATTTTGGGGCAACCCAGAGATCAGGAGAAGTGGTCCGCTGATTTGATTCATCAGAAGGTAAGCAAATGTGCTCTATTGAAATGCTTTTAGCTCAAAAGATTGCTAACTTTAGAAGGCTCAAGATCATATGCAATTTGTAGAACATCCCTAAAAGTACTGTAATTTTAAAGCTCCATAACATTGCTCATTTTTATTCGATTGATATGATTTTTAGTGTGTAAAATAGGAAATTTTAAGAGCTACACAACCAAATTTAATTTTTAAAACCTTAAAATRGTATGCCATTTGTAATACATCCCAAAAAGTACTGTGATTTTTTCAAAAAAAAACCGCACTAGTTTCAAAGTCTCATAACATTGCTCAGTTTTATCTGATTTCAATAAATTTTATTTCAAAACATAGCAAATTTGAAGAGCTACCCAACGATATCTAACTCATCAATTATCAAATTATCAAAAATCAAATTACAGGACTTCACCGCCATCATCCAACTACTCGTGCTCATCGCTCTTCACTATCGCGCTCCAATCCGCTTCCCAGACAACGTGGTAGCCAATGTTGTAGTTGCTCAAAAGGAGCACGGACAAGTGAAAACGCATCGAATCACGGAGCAAATCACGACTGTCCAAACCGAGCTCGCACCAAAAGGAACCCGCGATGCCTTCGATACACTTTTCGACTACGGACCCGACAAGTTGGCTCATGTGAAGACGTCGCTTTTGGCGTTCTGTAATAAGCATTTGAATAAGATCAATCTAGAAGTCTCGGATTTGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>503 324 173</canonical_bands>
                <polymorphic_bands>827 173</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAGATCATATGCAATTTGTAG</pcr_primer_p1>
		<pcr_primer_p2>AACTGAGCAATGTTATGAGACTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCAAGATCATATGCAATTTGTAGAACATCCCTAAAAGTACTGTAATTTTAAAGCTCCATAACATTGCTCATTTTTATTCGATTGATATGATTTTTAGTGTGTAAAATAGGAAATTTTAAGAGCTACACAACCAAATTTAATTTTTAAAACCTTAAAATGGTATGCCATTTGTAATACATCCCAAAAAGTACTGTGATTTTTTCAAAAAAAAACCGCACTAGTTTCAAAGTCTCATAACATTGCTCAGTT</canonical_amplicon>
		<polymorphic_amplicon>TCAAGATCATATGCAATTTGTAGAACATCCCTAAAAGTACTGTAATTTTAAAGCTCCATAACATTGCTCATTTTTATTCGATTGATATGATTTTTAGTGTGTAAAATAGGAAATTTTAAGAGCTACACAACCAAATTTAATTTTTAAAACCTTAAAATRGTATGCCATTTGTAATACATCCCAAAAAGTACTGTGATTTTTTCAAAAAAAAACCGCACTAGTTTCAAAGTCTCATAACATTGCTCAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10868</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>22647</contig_pos>
        <strand>+</strand>
        <context>TWTAATTTTT[A/G]AAACCTTAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTGTGTAAAATAGGAAATTTTAAGAGCTACACAACCAAATTTAATTTTT</left_flank>
        <right_flank>AAACCTTAAAATGGTATGCCATTTGTAATACATCCCAAAAAGTACTGTGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGGCTCAATGACGAGTTGGCTGATCAAAGAATCGTCGTTCGTCACATCCAGGAGGATCTTTTTGATGGCCAGATTATTCAGAAGCTTTTGGAAAAGTTGGAACAGATTCGGGTGAGAAATTTGGCGGGAATTTGAAGTTTTGAATCTTTTATTTTCAGATCGAAGTTCCAGAAGTGTCCCAATCGGAGGAGGGACAACGTCAGAAGCTTCAAATTGTCATTCAAACAGCTAATAGAATTTTGGGGCAACCCAGAGATCAGGAGAAGTGGTCCGCTGATTTGATTCATCAGAAGGTAAGCAAATGTGCTCTATTGAAATGCTTTTAGCTCAAAAGATTGCTAACTTTAGAAGGCTCAAGATCATATGCAATTTGTAGAACATCCCTAAAAGTACTGTAATTTTAAAGCTCCATAACATTGCTCATTTTTATTCGATTGATATGATTTTTAGTGTGTAAAATAGGAAATTTTAAGAGCTACACAACCAAATTTAATTTTTAAAACCTTAAAATGGTATGCCATTTGTAATACATCCCAAAAAGTACTGTGATTTTTTCAAAAAAAAACCGCACTAGTTTCAAAGTCTCATAACATTGCTCAGTTTTATCTGATTTCAATAAATTTTATTTCAAAACATAGCAAATTTGAAGAGCTACCCAACGATATCTAACTCATCAATTATCAAATTATCAAAAATCAAATTACAGGACTTCACCGCCATCATCCAACTACTCGTGCTCATCGCTCTTCACTATCGCGCTCCAATCCGCTTCCCAGACAACGTGGTAGCCAATGTTGTAGTTGCTCAAAAGGAGCACGGACAAGTGAAAACGCATCGAATCACGGAGCAAATCACGACTGTCCAAACCGAGCTCGCACCAAAAGGAACCCGCGATGCCTTCGATACACTTTTCGACTACGGACCCGACAAGTTGGCTCATGTGAAGACGTCGCTTTTGGCGTTCTGTAATAAGCATTTGAATAAGATCAATCTAGAAGT</canonical>
            <polymorphic>CTGGCTCAATGACGAGTTGGCTGATCAAAGAATCGTCGTTCGTCACATCCAGGAGGATCTTTTTGATGGCCAGATTATTCAGAAGCTTTTGGAAAAGTTGGAACAGATTCGGGTGAGAAATTTGGCGGGAATTTGAAGTTTTGAATCTTTTATTTTCAGATCGAAGTTCCAGAAGTGTCCCAATCGGAGGAGGGACAACGTCAGAAGCTTCAAATTGTCATTCAAACAGCTAATAGAATTTTGGGGCAACCCAGAGATCAGGAGAAGTGGTCCGCTGATTTGATTCATCAGAAGGTAAGCAAATGTGCTCTATTGAAATGCTTTTAGCTCAAAAGATTGCTAACTTTAGAAGGCTCAAGATCATATGCAATTTGTAGAACATCCCTAAAAGTACTGTAATTTTAAAGCTCCATAACATTGCTCATTTTTATTCGATTGATATGATTTTTAGTGTGTAAAATAGGAAATTTTAAGAGCTACACAACCAAATTTAATTTTTRAAACCTTAAAATGGTATGCCATTTGTAATACATCCCAAAAAGTACTGTGATTTTTTCAAAAAAAAACCGCACTAGTTTCAAAGTCTCATAACATTGCTCAGTTTTATCTGATTTCAATAAATTTTATTTCAAAACATAGCAAATTTGAAGAGCTACCCAACGATATCTAACTCATCAATTATCAAATTATCAAAAATCAAATTACAGGACTTCACCGCCATCATCCAACTACTCGTGCTCATCGCTCTTCACTATCGCGCTCCAATCCGCTTCCCAGACAACGTGGTAGCCAATGTTGTAGTTGCTCAAAAGGAGCACGGACAAGTGAAAACGCATCGAATCACGGAGCAAATCACGACTGTCCAAACCGAGCTCGCACCAAAAGGAACCCGCGATGCCTTCGATACACTTTTCGACTACGGACCCGACAAGTTGGCTCATGTGAAGACGTCGCTTTTGGCGTTCTGTAATAAGCATTTGAATAAGATCAATCTAGAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 403 96</canonical_bands>
                <polymorphic_bands>597 403</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>494 402 68 21 8 7</canonical_bands>
                <polymorphic_bands>494 402 68 21 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAGATCATATGCAATTTGTAG</pcr_primer_p1>
		<pcr_primer_p2>AACTGAGCAATGTTATGAGACTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCAAGATCATATGCAATTTGTAGAACATCCCTAAAAGTACTGTAATTTTAAAGCTCCATAACATTGCTCATTTTTATTCGATTGATATGATTTTTAGTGTGTAAAATAGGAAATTTTAAGAGCTACACAACCAAATTTAATTTTTAAAACCTTAAAATGGTATGCCATTTGTAATACATCCCAAAAAGTACTGTGATTTTTTCAAAAAAAAACCGCACTAGTTTCAAAGTCTCATAACATTGCTCAGTT</canonical_amplicon>
		<polymorphic_amplicon>TCAAGATCATATGCAATTTGTAGAACATCCCTAAAAGTACTGTAATTTTAAAGCTCCATAACATTGCTCATTTTTATTCGATTGATATGATTTTTAGTGTGTAAAATAGGAAATTTTAAGAGCTACACAACCAAATTTAATTTTTRAAACCTTAAAATGGTATGCCATTTGTAATACATCCCAAAAAGTACTGTGATTTTTTCAAAAAAAAACCGCACTAGTTTCAAAGTCTCATAACATTGCTCAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10869</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>22638</contig_pos>
        <strand>+</strand>
        <context>ACAACCAWAT[A/T]TAATTTTTRA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGATTTTTAGTGTGTAAAATAGGAAATTTTAAGAGCTACACAACCAAAT</left_flank>
        <right_flank>TAATTTTTAAAACCTTAAAATGGTATGCCATTTGTAATACATCCCAAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTCATTTACTGGCTCAATGACGAGTTGGCTGATCAAAGAATCGTCGTTCGTCACATCCAGGAGGATCTTTTTGATGGCCAGATTATTCAGAAGCTTTTGGAAAAGTTGGAACAGATTCGGGTGAGAAATTTGGCGGGAATTTGAAGTTTTGAATCTTTTATTTTCAGATCGAAGTTCCAGAAGTGTCCCAATCGGAGGAGGGACAACGTCAGAAGCTTCAAATTGTCATTCAAACAGCTAATAGAATTTTGGGGCAACCCAGAGATCAGGAGAAGTGGTCCGCTGATTTGATTCATCAGAAGGTAAGCAAATGTGCTCTATTGAAATGCTTTTAGCTCAAAAGATTGCTAACTTTAGAAGGCTCAAGATCATATGCAATTTGTAGAACATCCCTAAAAGTACTGTAATTTTAAAGCTCCATAACATTGCTCATTTTTATTCGATTGATATGATTTTTAGTGTGTAAAATAGGAAATTTTAAGAGCTACACAACCAAATTTAATTTTTAAAACCTTAAAATGGTATGCCATTTGTAATACATCCCAAAAAGTACTGTGATTTTTTCAAAAAAAAACCGCACTAGTTTCAAAGTCTCATAACATTGCTCAGTTTTATCTGATTTCAATAAATTTTATTTCAAAACATAGCAAATTTGAAGAGCTACCCAACGATATCTAACTCATCAATTATCAAATTATCAAAAATCAAATTACAGGACTTCACCGCCATCATCCAACTACTCGTGCTCATCGCTCTTCACTATCGCGCTCCAATCCGCTTCCCAGACAACGTGGTAGCCAATGTTGTAGTTGCTCAAAAGGAGCACGGACAAGTGAAAACGCATCGAATCACGGAGCAAATCACGACTGTCCAAACCGAGCTCGCACCAAAAGGAACCCGCGATGCCTTCGATACACTTTTCGACTACGGACCCGACAAGTTGGCTCATGTGAAGACGTCGCTTTTGGCGTTCTGTAATAAGCATTTGAATAAGATCAA</canonical>
            <polymorphic>GCTCATTTACTGGCTCAATGACGAGTTGGCTGATCAAAGAATCGTCGTTCGTCACATCCAGGAGGATCTTTTTGATGGCCAGATTATTCAGAAGCTTTTGGAAAAGTTGGAACAGATTCGGGTGAGAAATTTGGCGGGAATTTGAAGTTTTGAATCTTTTATTTTCAGATCGAAGTTCCAGAAGTGTCCCAATCGGAGGAGGGACAACGTCAGAAGCTTCAAATTGTCATTCAAACAGCTAATAGAATTTTGGGGCAACCCAGAGATCAGGAGAAGTGGTCCGCTGATTTGATTCATCAGAAGGTAAGCAAATGTGCTCTATTGAAATGCTTTTAGCTCAAAAGATTGCTAACTTTAGAAGGCTCAAGATCATATGCAATTTGTAGAACATCCCTAAAAGTACTGTAATTTTAAAGCTCCATAACATTGCTCATTTTTATTCGATTGATATGATTTTTAGTGTGTAAAATAGGAAATTTTAAGAGCTACACAACCAAATWTAATTTTTAAAACCTTAAAATGGTATGCCATTTGTAATACATCCCAAAAAGTACTGTGATTTTTTCAAAAAAAAACCGCACTAGTTTCAAAGTCTCATAACATTGCTCAGTTTTATCTGATTTCAATAAATTTTATTTCAAAACATAGCAAATTTGAAGAGCTACCCAACGATATCTAACTCATCAATTATCAAATTATCAAAAATCAAATTACAGGACTTCACCGCCATCATCCAACTACTCGTGCTCATCGCTCTTCACTATCGCGCTCCAATCCGCTTCCCAGACAACGTGGTAGCCAATGTTGTAGTTGCTCAAAAGGAGCACGGACAAGTGAAAACGCATCGAATCACGGAGCAAATCACGACTGTCCAAACCGAGCTCGCACCAAAAGGAACCCGCGATGCCTTCGATACACTTTTCGACTACGGACCCGACAAGTTGGCTCATGTGAAGACGTCGCTTTTGGCGTTCTGTAATAAGCATTTGAATAAGATCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>350 229 132 127 107 22 22 11</canonical_bands>
                <polymorphic_bands>350 229 154 127 107 22 11</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>485 411 68 21 8 7</canonical_bands>
                <polymorphic_bands>485 411 68 28 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>292 132 127 127 83 68 35 29 24 22 22 15 11 8 5</canonical_bands>
                <polymorphic_bands>292 132 127 127 83 68 35 29 27 24 22 15 11 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGCTCTATTGAAATGCTTTTAG</pcr_primer_p1>
		<pcr_primer_p2>ATCACAGTACTTTTTGGGATGTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTGCTCTATTGAAATGCTTTTAGCTCAAAAGATTGCTAACTTTAGAAGGCTCAAGATCATATGCAATTTGTAGAACATCCCTAAAAGTACTGTAATTTTAAAGCTCCATAACATTGCTCATTTTTATTCGATTGATATGATTTTTAGTGTGTAAAATAGGAAATTTTAAGAGCTACACAACCAAATTTAATTTTTAAAACCTTAAAATGGTATGCCATTTGTAATACATCCCAAAAAGTACTGTGAT</canonical_amplicon>
		<polymorphic_amplicon>GTGCTCTATTGAAATGCTTTTAGCTCAAAAGATTGCTAACTTTAGAAGGCTCAAGATCATATGCAATTTGTAGAACATCCCTAAAAGTACTGTAATTTTAAAGCTCCATAACATTGCTCATTTTTATTCGATTGATATGATTTTTAGTGTGTAAAATAGGAAATTTTAAGAGCTACACAACCAAATWTAATTTTTAAAACCTTAAAATGGTATGCCATTTGTAATACATCCCAAAAAGTACTGTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10870</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>22635</contig_pos>
        <strand>+</strand>
        <context>TACACAACCA[A/T]ATWTAATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATATGATTTTTAGTGTGTAAAATAGGAAATTTTAAGAGCTACACAACCA</left_flank>
        <right_flank>ATTTAATTTTTAAAACCTTAAAATGGTATGCCATTTGTAATACATCCCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGCTCATTTACTGGCTCAATGACGAGTTGGCTGATCAAAGAATCGTCGTTCGTCACATCCAGGAGGATCTTTTTGATGGCCAGATTATTCAGAAGCTTTTGGAAAAGTTGGAACAGATTCGGGTGAGAAATTTGGCGGGAATTTGAAGTTTTGAATCTTTTATTTTCAGATCGAAGTTCCAGAAGTGTCCCAATCGGAGGAGGGACAACGTCAGAAGCTTCAAATTGTCATTCAAACAGCTAATAGAATTTTGGGGCAACCCAGAGATCAGGAGAAGTGGTCCGCTGATTTGATTCATCAGAAGGTAAGCAAATGTGCTCTATTGAAATGCTTTTAGCTCAAAAGATTGCTAACTTTAGAAGGCTCAAGATCATATGCAATTTGTAGAACATCCCTAAAAGTACTGTAATTTTAAAGCTCCATAACATTGCTCATTTTTATTCGATTGATATGATTTTTAGTGTGTAAAATAGGAAATTTTAAGAGCTACACAACCAAATTTAATTTTTAAAACCTTAAAATGGTATGCCATTTGTAATACATCCCAAAAAGTACTGTGATTTTTTCAAAAAAAAACCGCACTAGTTTCAAAGTCTCATAACATTGCTCAGTTTTATCTGATTTCAATAAATTTTATTTCAAAACATAGCAAATTTGAAGAGCTACCCAACGATATCTAACTCATCAATTATCAAATTATCAAAAATCAAATTACAGGACTTCACCGCCATCATCCAACTACTCGTGCTCATCGCTCTTCACTATCGCGCTCCAATCCGCTTCCCAGACAACGTGGTAGCCAATGTTGTAGTTGCTCAAAAGGAGCACGGACAAGTGAAAACGCATCGAATCACGGAGCAAATCACGACTGTCCAAACCGAGCTCGCACCAAAAGGAACCCGCGATGCCTTCGATACACTTTTCGACTACGGACCCGACAAGTTGGCTCATGTGAAGACGTCGCTTTTGGCGTTCTGTAATAAGCATTTGAATAAGAT</canonical>
            <polymorphic>TTTGCTCATTTACTGGCTCAATGACGAGTTGGCTGATCAAAGAATCGTCGTTCGTCACATCCAGGAGGATCTTTTTGATGGCCAGATTATTCAGAAGCTTTTGGAAAAGTTGGAACAGATTCGGGTGAGAAATTTGGCGGGAATTTGAAGTTTTGAATCTTTTATTTTCAGATCGAAGTTCCAGAAGTGTCCCAATCGGAGGAGGGACAACGTCAGAAGCTTCAAATTGTCATTCAAACAGCTAATAGAATTTTGGGGCAACCCAGAGATCAGGAGAAGTGGTCCGCTGATTTGATTCATCAGAAGGTAAGCAAATGTGCTCTATTGAAATGCTTTTAGCTCAAAAGATTGCTAACTTTAGAAGGCTCAAGATCATATGCAATTTGTAGAACATCCCTAAAAGTACTGTAATTTTAAAGCTCCATAACATTGCTCATTTTTATTCGATTGATATGATTTTTAGTGTGTAAAATAGGAAATTTTAAGAGCTACACAACCAWATTTAATTTTTAAAACCTTAAAATGGTATGCCATTTGTAATACATCCCAAAAAGTACTGTGATTTTTTCAAAAAAAAACCGCACTAGTTTCAAAGTCTCATAACATTGCTCAGTTTTATCTGATTTCAATAAATTTTATTTCAAAACATAGCAAATTTGAAGAGCTACCCAACGATATCTAACTCATCAATTATCAAATTATCAAAAATCAAATTACAGGACTTCACCGCCATCATCCAACTACTCGTGCTCATCGCTCTTCACTATCGCGCTCCAATCCGCTTCCCAGACAACGTGGTAGCCAATGTTGTAGTTGCTCAAAAGGAGCACGGACAAGTGAAAACGCATCGAATCACGGAGCAAATCACGACTGTCCAAACCGAGCTCGCACCAAAAGGAACCCGCGATGCCTTCGATACACTTTTCGACTACGGACCCGACAAGTTGGCTCATGTGAAGACGTCGCTTTTGGCGTTCTGTAATAAGCATTTGAATAAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>347 229 132 130 107 22 22 11</canonical_bands>
                <polymorphic_bands>347 229 154 130 107 22 11</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>289 132 130 127 83 68 35 29 24 22 22 15 11 8 5</canonical_bands>
                <polymorphic_bands>289 132 130 127 83 68 35 29 27 24 22 15 11 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGCTCTATTGAAATGCTTTTAG</pcr_primer_p1>
		<pcr_primer_p2>ATCACAGTACTTTTTGGGATGTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTGCTCTATTGAAATGCTTTTAGCTCAAAAGATTGCTAACTTTAGAAGGCTCAAGATCATATGCAATTTGTAGAACATCCCTAAAAGTACTGTAATTTTAAAGCTCCATAACATTGCTCATTTTTATTCGATTGATATGATTTTTAGTGTGTAAAATAGGAAATTTTAAGAGCTACACAACCAAATTTAATTTTTAAAACCTTAAAATGGTATGCCATTTGTAATACATCCCAAAAAGTACTGTGAT</canonical_amplicon>
		<polymorphic_amplicon>GTGCTCTATTGAAATGCTTTTAGCTCAAAAGATTGCTAACTTTAGAAGGCTCAAGATCATATGCAATTTGTAGAACATCCCTAAAAGTACTGTAATTTTAAAGCTCCATAACATTGCTCATTTTTATTCGATTGATATGATTTTTAGTGTGTAAAATAGGAAATTTTAAGAGCTACACAACCAWATTTAATTTTTAAAACCTTAAAATGGTATGCCATTTGTAATACATCCCAAAAAGTACTGTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10871</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>22604</contig_pos>
        <strand>+</strand>
        <context>TTTAGTGTGT[A/G]AAATAGGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTCCATAACATTGCTCATTTTTATTCGATTGATATGATTTTTAGTGTGT</left_flank>
        <right_flank>AAATAGGAAATTTTAAGAGCTACACAACCAAATTTAATTTTTAAAACCTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCGTGACCAGAAGTTGGGACAAGTCGTCGATTTGCTCATTTACTGGCTCAATGACGAGTTGGCTGATCAAAGAATCGTCGTTCGTCACATCCAGGAGGATCTTTTTGATGGCCAGATTATTCAGAAGCTTTTGGAAAAGTTGGAACAGATTCGGGTGAGAAATTTGGCGGGAATTTGAAGTTTTGAATCTTTTATTTTCAGATCGAAGTTCCAGAAGTGTCCCAATCGGAGGAGGGACAACGTCAGAAGCTTCAAATTGTCATTCAAACAGCTAATAGAATTTTGGGGCAACCCAGAGATCAGGAGAAGTGGTCCGCTGATTTGATTCATCAGAAGGTAAGCAAATGTGCTCTATTGAAATGCTTTTAGCTCAAAAGATTGCTAACTTTAGAAGGCTCAAGATCATATGCAATTTGTAGAACATCCCTAAAAGTACTGTAATTTTAAAGCTCCATAACATTGCTCATTTTTATTCGATTGATATGATTTTTAGTGTGTAAAATAGGAAATTTTAAGAGCTACACAACCAAATTTAATTTTTAAAACCTTAAAATGGTATGCCATTTGTAATACATCCCAAAAAGTACTGTGATTTTTTCAAAAAAAAACCGCACTAGTTTCAAAGTCTCATAACATTGCTCAGTTTTATCTGATTTCAATAAATTTTATTTCAAAACATAGCAAATTTGAAGAGCTACCCAACGATATCTAACTCATCAATTATCAAATTATCAAAAATCAAATTACAGGACTTCACCGCCATCATCCAACTACTCGTGCTCATCGCTCTTCACTATCGCGCTCCAATCCGCTTCCCAGACAACGTGGTAGCCAATGTTGTAGTTGCTCAAAAGGAGCACGGACAAGTGAAAACGCATCGAATCACGGAGCAAATCACGACTGTCCAAACCGAGCTCGCACCAAAAGGAACCCGCGATGCCTTCGATACACTTTTCGACTACGGACCCGACAAGTTGGCTCATGTGAAGACGTCGCTTT</canonical>
            <polymorphic>CCCGTGACCAGAAGTTGGGACAAGTCGTCGATTTGCTCATTTACTGGCTCAATGACGAGTTGGCTGATCAAAGAATCGTCGTTCGTCACATCCAGGAGGATCTTTTTGATGGCCAGATTATTCAGAAGCTTTTGGAAAAGTTGGAACAGATTCGGGTGAGAAATTTGGCGGGAATTTGAAGTTTTGAATCTTTTATTTTCAGATCGAAGTTCCAGAAGTGTCCCAATCGGAGGAGGGACAACGTCAGAAGCTTCAAATTGTCATTCAAACAGCTAATAGAATTTTGGGGCAACCCAGAGATCAGGAGAAGTGGTCCGCTGATTTGATTCATCAGAAGGTAAGCAAATGTGCTCTATTGAAATGCTTTTAGCTCAAAAGATTGCTAACTTTAGAAGGCTCAAGATCATATGCAATTTGTAGAACATCCCTAAAAGTACTGTAATTTTAAAGCTCCATAACATTGCTCATTTTTATTCGATTGATATGATTTTTAGTGTGTRAAATAGGAAATTTTAAGAGCTACACAACCAAATTTAATTTTTAAAACCTTAAAATGGTATGCCATTTGTAATACATCCCAAAAAGTACTGTGATTTTTTCAAAAAAAAACCGCACTAGTTTCAAAGTCTCATAACATTGCTCAGTTTTATCTGATTTCAATAAATTTTATTTCAAAACATAGCAAATTTGAAGAGCTACCCAACGATATCTAACTCATCAATTATCAAATTATCAAAAATCAAATTACAGGACTTCACCGCCATCATCCAACTACTCGTGCTCATCGCTCTTCACTATCGCGCTCCAATCCGCTTCCCAGACAACGTGGTAGCCAATGTTGTAGTTGCTCAAAAGGAGCACGGACAAGTGAAAACGCATCGAATCACGGAGCAAATCACGACTGTCCAAACCGAGCTCGCACCAAAAGGAACCCGCGATGCCTTCGATACACTTTTCGACTACGGACCCGACAAGTTGGCTCATGTGAAGACGTCGCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGCTCTATTGAAATGCTTTTAG</pcr_primer_p1>
		<pcr_primer_p2>ATCACAGTACTTTTTGGGATGTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTGCTCTATTGAAATGCTTTTAGCTCAAAAGATTGCTAACTTTAGAAGGCTCAAGATCATATGCAATTTGTAGAACATCCCTAAAAGTACTGTAATTTTAAAGCTCCATAACATTGCTCATTTTTATTCGATTGATATGATTTTTAGTGTGTAAAATAGGAAATTTTAAGAGCTACACAACCAAATTTAATTTTTAAAACCTTAAAATGGTATGCCATTTGTAATACATCCCAAAAAGTACTGTGAT</canonical_amplicon>
		<polymorphic_amplicon>GTGCTCTATTGAAATGCTTTTAGCTCAAAAGATTGCTAACTTTAGAAGGCTCAAGATCATATGCAATTTGTAGAACATCCCTAAAAGTACTGTAATTTTAAAGCTCCATAACATTGCTCATTTTTATTCGATTGATATGATTTTTAGTGTGTRAAATAGGAAATTTTAAGAGCTACACAACCAAATTTAATTTTTAAAACCTTAAAATGGTATGCCATTTGTAATACATCCCAAAAAGTACTGTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10872</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>8296</contig_pos>
        <strand>+</strand>
        <context>CTCCTCCACA[C/T]ATTCTCTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAGAAGGAGTCAAAAACGGGCGGCCCCCTATTGCATTCCTCCTCCACA</left_flank>
        <right_flank>ATTCTCTCCAAAAACTGATAAGATTGTCCCCAAGGCACGACAAAAGCGGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAGAGGATCGATATTATGTGGAAAGAGCTATTTAGTCTTTTTTAAAAACTCCATTTTTACAAATTATTGCATTAATTGTTCTTTATTATCTTAATTATATTTTGTTGTTTTTACATAAGACTTCAATTTTTGTTTTAATGAATAATTGATCACTCTTAATTTTGTATGAATATACCGTAAACCATTTCATACGTAGAAGGCTACCCTATAAAAAATGTTTATTATAACATCAAAAACATTTTATTAGTTGACTACTTTTTTATATCTATCACAAGAACCGAGATATATGGGCTCAATGTGCAAGTGTTGGGTGGCCTTTTATTAGAGTGTTAAAAAATTTTTCAGCGTAATCAGCAAGAAAAAAAGTGTTTTTTCCAAACTGTGACATGAAAATTCCAGTCCCTTCAACATGACATAAATTTGATATTTGTTCAACATTTTAAGTAGAGAAGAAGGAGTCAAAAACGGGCGGCCCCCTATTGCATTCCTCCTCCACATATTCTCTCCAAAAACTGATAAGATTGTCCCCAAGGCACGACAAAAGCGGGAAGAAGGTTCTCTTATCAATTTTTTGGCAGAGCAAGAAAGAAAGAAATTGCGCCTATTTGAGTTGATTGTGTGTATGTGCATGTTTGTGTGGTGCAGCCTTGTCGTTTACTACACTATTTCCAGCAATTTTATTGACTGTTTCTAGTAGAATTTCCCCGGCAAAAATCATCAGTGTACAATTTTCTCGTTTCATGGTTTTCGTTCTGACATAACTTTTGTGGTTACACCTTATTCCGATTCTTGCTTTCTTCTTCCTCTTTTTTGATTCTATCAACTTTCAGAATGTTAGACCTAGAAGTGGACTTGAACACAGCACTTGTAGCAGTCAAACAGAAATGTGTGGACTTGGACGAGAAGATTCGAAGAGAGAATGAAGTAAGTGTTTCTCTATCCCATCCAAGACTGTCATACAAAGGCCGCGGCCGGCCGCCACCCTGGCCACTGGTAGT</canonical>
            <polymorphic>TCCAGAGGATCGATATTATGTGGAAAGAGCTATTTAGTCTTTTTTAAAAACTCCATTTTTACAAATTATTGCATTAATTGTTCTTTATTATCTTAATTATATTTTGTTGTTTTTACATAAGACTTCAATTTTTGTTTTAATGAATAATTGATCACTCTTAATTTTGTATGAATATACCGTAAACCATTTCATACGTAGAAGGCTACCCTATAAAAAATGTTTATTATAACATCAAAAACATTTTATTAGTTGACTACTTTTTTATATCTATCACAAGAACCGAGATATATGGGCTCAATGTGCAAGTGTTGGGTGGCCTTTTATTAGAGTGTTAAAAAATTTTTCAGCGTAATCAGCAAGAAAAAAAGTGTTTTTTCCAAACTGTGACATGAAAATTCCAGTCCCTTCAACATGACATAAATTTGATATTTGTTCAACATTTTAAGTAGAGAAGAAGGAGTCAAAAACGGGCGGCCCCCTATTGCATTCCTCCTCCACAYATTCTCTCCAAAAACTGATAAGATTGTCCCCAAGGCACGACAAAAGCGGGAAGAAGGTTCTCTTATCAATTTTTTGGCAGAGCAAGAAAGAAAGAAATTGCGCCTATTTGAGTTGATTGTGTGTATGTGCATGTTTGTGTGGTGCAGCCTTGTCGTTTACTACACTATTTCCAGCAATTTTATTGACTGTTTCTAGTAGAATTTCCCCGGCAAAAATCATCAGTGTACAATTTTCTCGTTTCATGGTTTTCGTTCTGACATAACTTTTGTGGTTACACCTTATTCCGATTCTTGCTTTCTTCTTCCTCTTTTTTGATTCTATCAACTTTCAGAATGTTAGACCTAGAAGTGGACTTGAACACAGCACTTGTAGCAGTCAAACAGAAATGTGTGGACTTGGACGAGAAGATTCGAAGAGAGAATGAAGTAAGTGTTTCTCTATCCCATCCAAGACTGTCATACAAAGGCCGCGGCCGGCCGCCACCCTGGCCACTGGTAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTAGAGAAGAAGGAGTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGTCAATAAAATTGCTGGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAGTAGAGAAGAAGGAGTCAAAAACGGGCGGCCCCCTATTGCATTCCTCCTCCACATATTCTCTCCAAAAACTGATAAGATTGTCCCCAAGGCACGACAAAAGCGGGAAGAAGGTTCTCTTATCAATTTTTTGGCAGAGCAAGAAAGAAAGAAATTGCGCCTATTTGAGTTGATTGTGTGTATGTGCATGTTTGTGTGGTGCAGCCTTGTCGTTTACTACACTATTTCCAGCAATTTTATTGACT</canonical_amplicon>
		<polymorphic_amplicon>AAGTAGAGAAGAAGGAGTCAAAAACGGGCGGCCCCCTATTGCATTCCTCCTCCACAYATTCTCTCCAAAAACTGATAAGATTGTCCCCAAGGCACGACAAAAGCGGGAAGAAGGTTCTCTTATCAATTTTTTGGCAGAGCAAGAAAGAAAGAAATTGCGCCTATTTGAGTTGATTGTGTGTATGTGCATGTTTGTGTGGTGCAGCCTTGTCGTTTACTACACTATTTCCAGCAATTTTATTGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10873</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>8218</contig_pos>
        <strand>+</strand>
        <context>ATGACATAAA[C/T]TTGATATTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTCCAAACTGTGACATGAAAATTCCAGTCCCTTCAACATGACATAAA</left_flank>
        <right_flank>TTGATATTTGTTCAACATTTTAAGTAGAGAAGAAGGAGTCAAAAACGGGC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCTCTGATTCGTATTGTCAGTCCAAGATACACTAGAATTCCAGATTATGTCATTTCCAATGCTCCCAGTTATGTTTTTCCAGAGGATCGATATTATGTGGAAAGAGCTATTTAGTCTTTTTTAAAAACTCCATTTTTACAAATTATTGCATTAATTGTTCTTTATTATCTTAATTATATTTTGTTGTTTTTACATAAGACTTCAATTTTTGTTTTAATGAATAATTGATCACTCTTAATTTTGTATGAATATACCGTAAACCATTTCATACGTAGAAGGCTACCCTATAAAAAATGTTTATTATAACATCAAAAACATTTTATTAGTTGACTACTTTTTTATATCTATCACAAGAACCGAGATATATGGGCTCAATGTGCAAGTGTTGGGTGGCCTTTTATTAGAGTGTTAAAAAATTTTTCAGCGTAATCAGCAAGAAAAAAAGTGTTTTTTCCAAACTGTGACATGAAAATTCCAGTCCCTTCAACATGACATAAATTTGATATTTGTTCAACATTTTAAGTAGAGAAGAAGGAGTCAAAAACGGGCGGCCCCCTATTGCATTCCTCCTCCACATATTCTCTCCAAAAACTGATAAGATTGTCCCCAAGGCACGACAAAAGCGGGAAGAAGGTTCTCTTATCAATTTTTTGGCAGAGCAAGAAAGAAAGAAATTGCGCCTATTTGAGTTGATTGTGTGTATGTGCATGTTTGTGTGGTGCAGCCTTGTCGTTTACTACACTATTTCCAGCAATTTTATTGACTGTTTCTAGTAGAATTTCCCCGGCAAAAATCATCAGTGTACAATTTTCTCGTTTCATGGTTTTCGTTCTGACATAACTTTTGTGGTTACACCTTATTCCGATTCTTGCTTTCTTCTTCCTCTTTTTTGATTCTATCAACTTTCAGAATGTTAGACCTAGAAGTGGACTTGAACACAGCACTTGTAGCAGTCAAACAGAAATGTGTGGACTTGGACGAGAAGATTCGAAGAGAGAA</canonical>
            <polymorphic>TGCTCTGATTCGTATTGTCAGTCCAAGATACACTAGAATTCCAGATTATGTCATTTCCAATGCTCCCAGTTATGTTTTTCCAGAGGATCGATATTATGTGGAAAGAGCTATTTAGTCTTTTTTAAAAACTCCATTTTTACAAATTATTGCATTAATTGTTCTTTATTATCTTAATTATATTTTGTTGTTTTTACATAAGACTTCAATTTTTGTTTTAATGAATAATTGATCACTCTTAATTTTGTATGAATATACCGTAAACCATTTCATACGTAGAAGGCTACCCTATAAAAAATGTTTATTATAACATCAAAAACATTTTATTAGTTGACTACTTTTTTATATCTATCACAAGAACCGAGATATATGGGCTCAATGTGCAAGTGTTGGGTGGCCTTTTATTAGAGTGTTAAAAAATTTTTCAGCGTAATCAGCAAGAAAAAAAGTGTTTTTTCCAAACTGTGACATGAAAATTCCAGTCCCTTCAACATGACATAAAYTTGATATTTGTTCAACATTTTAAGTAGAGAAGAAGGAGTCAAAAACGGGCGGCCCCCTATTGCATTCCTCCTCCACATATTCTCTCCAAAAACTGATAAGATTGTCCCCAAGGCACGACAAAAGCGGGAAGAAGGTTCTCTTATCAATTTTTTGGCAGAGCAAGAAAGAAAGAAATTGCGCCTATTTGAGTTGATTGTGTGTATGTGCATGTTTGTGTGGTGCAGCCTTGTCGTTTACTACACTATTTCCAGCAATTTTATTGACTGTTTCTAGTAGAATTTCCCCGGCAAAAATCATCAGTGTACAATTTTCTCGTTTCATGGTTTTCGTTCTGACATAACTTTTGTGGTTACACCTTATTCCGATTCTTGCTTTCTTCTTCCTCTTTTTTGATTCTATCAACTTTCAGAATGTTAGACCTAGAAGTGGACTTGAACACAGCACTTGTAGCAGTCAAACAGAAATGTGTGGACTTGGACGAGAAGATTCGAAGAGAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>379 280 223 56 36 26</canonical_bands>
                <polymorphic_bands>379 306 223 56 36</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>194 178 148 105 80 56 36 32 29 28 26 24 19 19 14 12</canonical_bands>
                <polymorphic_bands>194 178 174 105 80 56 36 32 29 28 24 19 19 14 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCCAAACTGTGACATGA</pcr_primer_p1>
		<pcr_primer_p2>TACACACAATCAACTCAAATAGG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTTTCCAAACTGTGACATGAAAATTCCAGTCCCTTCAACATGACATAAATTTGATATTTGTTCAACATTTTAAGTAGAGAAGAAGGAGTCAAAAACGGGCGGCCCCCTATTGCATTCCTCCTCCACATATTCTCTCCAAAAACTGATAAGATTGTCCCCAAGGCACGACAAAAGCGGGAAGAAGGTTCTCTTATCAATTTTTTGGCAGAGCAAGAAAGAAAGAAATTGCGCCTATTTGAGTTGATTGTGTGTA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCCAAACTGTGACATGAAAATTCCAGTCCCTTCAACATGACATAAAYTTGATATTTGTTCAACATTTTAAGTAGAGAAGAAGGAGTCAAAAACGGGCGGCCCCCTATTGCATTCCTCCTCCACATATTCTCTCCAAAAACTGATAAGATTGTCCCCAAGGCACGACAAAAGCGGGAAGAAGGTTCTCTTATCAATTTTTTGGCAGAGCAAGAAAGAAAGAAATTGCGCCTATTTGAGTTGATTGTGTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10874</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>8134</contig_pos>
        <strand>+</strand>
        <context>agTGTTAAAA[A/C]ATTTTTCAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATGGGCTCAATGTGCAAGTGTTGGGTGGCCTTTTATTAGAGTGTTAAAA</left_flank>
        <right_flank>ATTTTTCAGCGTAATCAGCAAGAAAAAAAGTGTTTTTTCCAAACTGTGAC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATGGAATCCGTTATCATTGTCTTGAATGTCCGGACTACGATATTTGTGAAAACTGCGAGAAAGATCTGGTTCATTTTGAACATGCTCTGATTCGTATTGTCAGTCCAAGATACACTAGAATTCCAGATTATGTCATTTCCAATGCTCCCAGTTATGTTTTTCCAGAGGATCGATATTATGTGGAAAGAGCTATTTAGTCTTTTTTAAAAACTCCATTTTTACAAATTATTGCATTAATTGTTCTTTATTATCTTAATTATATTTTGTTGTTTTTACATAAGACTTCAATTTTTGTTTTAATGAATAATTGATCACTCTTAATTTTGTATGAATATACCGTAAACCATTTCATACGTAGAAGGCTACCCTATAAAAAATGTTTATTATAACATCAAAAACATTTTATTAGTTGACTACTTTTTTATATCTATCACAAGAACCGAGATATATGGGCTCAATGTGCAAGTGTTGGGTGGCCTTTTATTAGAGTGTTAAAAAATTTTTCAGCGTAATCAGCAAGAAAAAAAGTGTTTTTTCCAAACTGTGACATGAAAATTCCAGTCCCTTCAACATGACATAAATTTGATATTTGTTCAACATTTTAAGTAGAGAAGAAGGAGTCAAAAACGGGCGGCCCCCTATTGCATTCCTCCTCCACATATTCTCTCCAAAAACTGATAAGATTGTCCCCAAGGCACGACAAAAGCGGGAAGAAGGTTCTCTTATCAATTTTTTGGCAGAGCAAGAAAGAAAGAAATTGCGCCTATTTGAGTTGATTGTGTGTATGTGCATGTTTGTGTGGTGCAGCCTTGTCGTTTACTACACTATTTCCAGCAATTTTATTGACTGTTTCTAGTAGAATTTCCCCGGCAAAAATCATCAGTGTACAATTTTCTCGTTTCATGGTTTTCGTTCTGACATAACTTTTGTGGTTACACCTTATTCCGATTCTTGCTTTCTTCTTCCTCTTTTTTGATTCTATCAACTTTCAGAATGTT</canonical>
            <polymorphic>TCATGGAATCCGTTATCATTGTCTTGAATGTCCGGACTACGATATTTGTGAAAACTGCGAGAAAGATCTGGTTCATTTTGAACATGCTCTGATTCGTATTGTCAGTCCAAGATACACTAGAATTCCAGATTATGTCATTTCCAATGCTCCCAGTTATGTTTTTCCAGAGGATCGATATTATGTGGAAAGAGCTATTTAGTCTTTTTTAAAAACTCCATTTTTACAAATTATTGCATTAATTGTTCTTTATTATCTTAATTATATTTTGTTGTTTTTACATAAGACTTCAATTTTTGTTTTAATGAATAATTGATCACTCTTAATTTTGTATGAATATACCGTAAACCATTTCATACGTAGAAGGCTACCCTATAAAAAATGTTTATTATAACATCAAAAACATTTTATTAGTTGACTACTTTTTTATATCTATCACAAGAACCGAGATATATGGGCTCAATGTGCAAGTGTTGGGTGGCCTTTTATTAGAGTGTTAAAAMATTTTTCAGCGTAATCAGCAAGAAAAAAAGTGTTTTTTCCAAACTGTGACATGAAAATTCCAGTCCCTTCAACATGACATAAATTTGATATTTGTTCAACATTTTAAGTAGAGAAGAAGGAGTCAAAAACGGGCGGCCCCCTATTGCATTCCTCCTCCACATATTCTCTCCAAAAACTGATAAGATTGTCCCCAAGGCACGACAAAAGCGGGAAGAAGGTTCTCTTATCAATTTTTTGGCAGAGCAAGAAAGAAAGAAATTGCGCCTATTTGAGTTGATTGTGTGTATGTGCATGTTTGTGTGGTGCAGCCTTGTCGTTTACTACACTATTTCCAGCAATTTTATTGACTGTTTCTAGTAGAATTTCCCCGGCAAAAATCATCAGTGTACAATTTTCTCGTTTCATGGTTTTCGTTCTGACATAACTTTTGTGGTTACACCTTATTCCGATTCTTGCTTTCTTCTTCCTCTTTTTTGATTCTATCAACTTTCAGAATGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>379 280 139 120 56 26</canonical_bands>
                <polymorphic_bands>435 280 139 120 26</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>178 148 120 110 105 80 56 32 29 28 26 24 19 19 14 12</canonical_bands>
                <polymorphic_bands>234 148 120 110 105 80 32 29 28 26 24 19 19 14 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATACCGTAAACCATTTCATACG</pcr_primer_p1>
		<pcr_primer_p2>TTTATGTCATGTTGAAGGGACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATACCGTAAACCATTTCATACGTAGAAGGCTACCCTATAAAAAATGTTTATTATAACATCAAAAACATTTTATTAGTTGACTACTTTTTTATATCTATCACAAGAACCGAGATATATGGGCTCAATGTGCAAGTGTTGGGTGGCCTTTTATTAGAGTGTTAAAAAATTTTTCAGCGTAATCAGCAAGAAAAAAAGTGTTTTTTCCAAACTGTGACATGAAAATTCCAGTCCCTTCAACATGACATAAA</canonical_amplicon>
		<polymorphic_amplicon>TATACCGTAAACCATTTCATACGTAGAAGGCTACCCTATAAAAAATGTTTATTATAACATCAAAAACATTTTATTAGTTGACTACTTTTTTATATCTATCACAAGAACCGAGATATATGGGCTCAATGTGCAAGTGTTGGGTGGCCTTTTATTAGAGTGTTAAAAMATTTTTCAGCGTAATCAGCAAGAAAAAAAGTGTTTTTTCCAAACTGTGACATGAAAATTCCAGTCCCTTCAACATGACATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10875</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>36269</contig_pos>
        <strand>+</strand>
        <context>AACTTCTATT[C/T]GGATAAGCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAACTTTCAGGAAATTGACCTCGGATTCTGTTTGAACTGTAACTTCTATT</left_flank>
        <right_flank>GGATAAGCTGGAAATTTGTATATCCTGCGAACTCAAACAGCGAAATTCTG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAATTTTTACCGACATTTCCAGTCTGCAGAAATTCGGTTTGCCAGCCTGCAGACATCGACCAGTCAACGCTTTTCGACTGCCCTTTAGCAGTCGTTTAACAGCCTATTTTTTAGGTGGACTGGTTTGAGAATAATTCGTTATCATCATTCTATAACCTAGTGTGAGCATAACATATTGTTTTCTGACTGATTTCCTTTCAAAACTTTCGAGTATGTTTTCCAATGGGTTTCGTTGGTCCGCCAACAGTCCGTCAGTTCTCCTTTGGCAGCCGACTAGCAGCCAACCGCCAACTTGCGTCTCCTCAGTTGTCATTCAGGCTCAGGAAGATGCAATCAATTACGAAGCTCTCAATCTTGCCGAAGTTTATAAAGAACACTGTGTTGAGATGTTTGAAAAATGGTGGAACTGTAAAGTGAGAGAATGTTTGTTTTTCAATAGCAGTTCAAACAACTTTCAGGAAATTGACCTCGGATTCTGTTTGAACTGTAACTTCTATTCGGATAAGCTGGAAATTTGTATATCCTGCGAACTCAAACAGCGAAATTCTGCGCTTCACTATAAACCTGGACTCCAAGAAACACAATTGCAGTTTAATTATGATGGATTGGCTACGTTACCGATGAGATGGCAATGTGAAGAATGTGAAAAAAAGGCTTCAGGCAAATTGGATGCACCAATATTTCGGAAATTCGAGGCTGGAAAGAAGGAGAGGAGAACTGACTCGTGGATGCAATCATCTGAAAAGCAGATTAGAGAAACAACAGGATAAATGTGAACATAATGTAATCAAATTGAAAGATATTCCGAATTATCAATATGCGATAAAAGTGGCCACTCTGAAGCCCTTTGAAAGAATTCTGAAAGCGGGAATTGAGGAAAAGGTCAATTGTAAGCTGTGGAAAATAAGAATGCTGAAGATCTACGGCATTATGATTGGTCATCTCCGTTGTTATTTCAAAACCGCGATGGCAGGCTGTGAAGAAGGCGAAGCAAAAAAT</canonical>
            <polymorphic>GAAATTTTTACCGACATTTCCAGTCTGCAGAAATTCGGTTTGCCAGCCTGCAGACATCGACCAGTCAACGCTTTTCGACTGCCCTTTAGCAGTCGTTTAACAGCCTATTTTTTAGGTGGACTGGTTTGAGAATAATTCGTTATCATCATTCTATAACCTAGTGTGAGCATAACATATTGTTTTCTGACTGATTTCCTTTCAAAACTTTCGAGTATGTTTTCCAATGGGTTTCGTTGGTCCGCCAACAGTCCGTCAGTTCTCCTTTGGCAGCCGACTAGCAGCCAACCGCCAACTTGCGTCTCCTCAGTTGTCATTCAGGCTCAGGAAGATGCAATCAATTACGAAGCTCTCAATCTTGCCGAAGTTTATAAAGAACACTGTGTTGAGATGTTTGAAAAATGGTGGAACTGTAAAGTGAGAGAATGTTTGTTTTTCAATAGCAGTTCAAACAACTTTCAGGAAATTGACCTCGGATTCTGTTTGAACTGTAACTTCTATTYGGATAAGCTGGAAATTTGTATATCCTGCGAACTCAAACAGCGAAATTCTGCGCTTCACTATAAACCTGGACTCCAAGAAACACAATTGCAGTTTAATTATGATGGATTGGCTACGTTACCGATGAGATGGCAATGTGAAGAATGTGAAAAAAAGGCTTCAGGCAAATTGGATGCACCAATATTTCGGAAATTCGAGGCTGGAAAGAAGGAGAGGAGAACTGACTCGTGGATGCAATCATCTGAAAAGCAGATTAGAGAAACAACAGGATAAATGTGAACATAATGTAATCAAATTGAAAGATATTCCGAATTATCAATATGCGATAAAAGTGGCCACTCTGAAGCCCTTTGAAAGAATTCTGAAAGCGGGAATTGAGGAAAAGGTCAATTGTAAGCTGTGGAAAATAAGAATGCTGAAGATCTACGGCATTATGATTGGTCATCTCCGTTGTTATTTCAAAACCGCGATGGCAGGCTGTGAAGAAGGCGAAGCAAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>287 185 185 139 66 55 33 29 21</canonical_bands>
                <polymorphic_bands>287 214 185 139 66 55 33 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAATTACGAAGCTCTCAATC</pcr_primer_p1>
		<pcr_primer_p2>TTCTTGGAGTCCAGGTTTATAGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATCAATTACGAAGCTCTCAATCTTGCCGAAGTTTATAAAGAACACTGTGTTGAGATGTTTGAAAAATGGTGGAACTGTAAAGTGAGAGAATGTTTGTTTTTCAATAGCAGTTCAAACAACTTTCAGGAAATTGACCTCGGATTCTGTTTGAACTGTAACTTCTATTCGGATAAGCTGGAAATTTGTATATCCTGCGAACTCAAACAGCGAAATTCTGCGCTTCACTATAAACCTGGACTCCAAGAA</canonical_amplicon>
		<polymorphic_amplicon>ATCAATTACGAAGCTCTCAATCTTGCCGAAGTTTATAAAGAACACTGTGTTGAGATGTTTGAAAAATGGTGGAACTGTAAAGTGAGAGAATGTTTGTTTTTCAATAGCAGTTCAAACAACTTTCAGGAAATTGACCTCGGATTCTGTTTGAACTGTAACTTCTATTYGGATAAGCTGGAAATTTGTATATCCTGCGAACTCAAACAGCGAAATTCTGCGCTTCACTATAAACCTGGACTCCAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10895</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>102914</contig_pos>
        <strand></strand>
        <context>atttaaaaaa[A/C]atttagaaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAGCTTGTAATCTAAACTTTCGATATTTTGGAATTTTTAGATTTAAAAAA</left_flank>
        <right_flank>ATTTAGAAATAATTTACTCGACTGAATTCACCGAAACTCTTGAAATTCTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTCTGAAAAAAACTTCCAATATTTCAACATCCACTTTCTTTTCTGTTTCAACGTCATCAGGTACTGAGAACCCCCAGGGGACTCATTCGTACAGCTGACACGAGACAACAGAAAACATAAACTAATTGGCACATTCTCCTGTCTCTCTTCTTTTGACTCCGTGATTTTTTGGAGAAGACATCAAACTAGATGCTCCACTTATTTGGAAATAAATAGAGCGTCCCCTCTTTCCATGATTCATTATGTTCAATTGCTTGGAAACAGAGAATATACATGGCTCTTCATATGTCTTCTCGTATTTTTTATCTAATAGATGACTTGGATGAATCCCGAATTTCTTGCTTTCCATTAGATTTCGAACCATCGTGATCTTGTTTTTTTTTGTTTTGCTCATTCCCTTCTAATACCGTATTCTCACCCCAAGCCGTCCACTGAAAACCGGAAAAGAGCTTGTAATCTAAACTTTCGATATTTTGGAATTTTTAGATTTAAAAAAAATTTAGAAATAATTTACTCGACTGAATTCACCGAAACTCTTGAAATTCTTGAAACTTGACAAATTCAGTTTTTCCAAAATTCTAGAATTCCTCAGTTTTTTGAATTTTCGAAAACTTTAAAGTACGACGTCGGAGCCTGACACTTGCACTTTGAGCTCAATTATCATAGCTCCAGTAAGTGATATCAAAAATTTGTCAACTGCAAAAGAGCAAAAGTGTAGCTGATTTCATTAAAAAACATTTTGTCAGGTGACAAATTTTTATTATCTCTTATAGAAATTGAGATAATTGAGCTCAAAATGCAAGTATAGAATGGCCTCCCTCCTAATAGAGCGGTTATGTTTTTGTCAAGAAGCCTTGAACTGAATCCAGTCCTCTGAGTACTTCATAGGAACTTCTAGACAAATGAATCCTTTTATCTCATTTTTATTTTTCAGAAAACCTGTTTCTCGTTTTTTCAGAAAACTCTTATCCCATTTTATTATTACTCATACCCGAAG</canonical>
            <polymorphic>TATTTCTGAAAAAAACTTCCAATATTTCAACATCCACTTTCTTTTCTGTTTCAACGTCATCAGGTACTGAGAACCCCCAGGGGACTCATTCGTACAGCTGACACGAGACAACAGAAAACATAAACTAATTGGCACATTCTCCTGTCTCTCTTCTTTTGACTCCGTGATTTTTTGGAGAAGACATCAAACTAGATGCTCCACTTATTTGGAAATAAATAGAGCGTCCCCTCTTTCCATGATTCATTATGTTCAATTGCTTGGAAACAGAGAATATACATGGCTCTTCATATGTCTTCTCGTATTTTTTATCTAATAGATGACTTGGATGAATCCCGAATTTCTTGCTTTCCATTAGATTTCGAACCATCGTGATCTTGTTTTTTTTTGTTTTGCTCATTCCCTTCTAATACCGTATTCTCACCCCAAGCCGTCCACTGAAAACCGGAAAAGAGCTTGTAATCTAAACTTTCGATATTTTGGAATTTTTAGATTTAAAAAAMATTTAGAAATAATTTACTCGACTGAATTCACCGAAACTCTTGAAATTCTTGAAACTTGACAAATTCAGTTTTTCCAAAATTCTAGAATTCCTCAGTTTTTTGAATTTTCGAAAACTTTAAAGTACGACGTCGGAGCCTGACACTTGCACTTTGAGCTCAATTATCATAGCTCCAGTAAGTGATATCAAAAATTTGTCAACTGCAAAAGAGCAAAAGTGTAGCTGATTTCATTAAAAAACATTTTGTCAGGTGACAAATTTTTATTATCTCTTATAGAAATTGAGATAATTGAGCTCAAAATGCAAGTATAGAATGGCCTCCCTCCTAATAGAGCGGTTATGTTTTTGTCAAGAAGCCTTGAACTGAATCCAGTCCTCTGAGTACTTCATAGGAACTTCTAGACAAATGAATCCTTTTATCTCATTTTTATTTTTCAGAAAACCTGTTTCTCGTTTTTTCAGAAAACTCTTATCCCATTTTATTATTACTCATACCCGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>335 245 145 87 66 25 19 19 18 17 16 8</canonical_bands>
                <polymorphic_bands>335 245 145 87 66 44 19 18 17 16 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>214 145 126 125 84 66 56 31 22 19 19 18 17 16 14 11 9 8</canonical_bands>
                <polymorphic_bands>214 145 126 125 84 66 56 31 30 22 19 18 17 16 14 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTTGCTTTCCATTAGATTTC</pcr_primer_p1>
		<pcr_primer_p2>TCTAGAATTTTGGAAAAACTGAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTCTTGCTTTCCATTAGATTTCGAACCATCGTGATCTTGTTTTTTTTTGTTTTGCTCATTCCCTTCTAATACCGTATTCTCACCCCAAGCCGTCCACTGAAAACCGGAAAAGAGCTTGTAATCTAAACTTTCGATATTTTGGAATTTTTAGATTTAAAAAAAATTTAGAAATAATTTACTCGACTGAATTCACCGAAACTCTTGAAATTCTTGAAACTTGACAAATTCAGTTTTTCCAAAATTCTAGA</canonical_amplicon>
		<polymorphic_amplicon>TTCTTGCTTTCCATTAGATTTCGAACCATCGTGATCTTGTTTTTTTTTGTTTTGCTCATTCCCTTCTAATACCGTATTCTCACCCCAAGCCGTCCACTGAAAACCGGAAAAGAGCTTGTAATCTAAACTTTCGATATTTTGGAATTTTTAGATTTAAAAAAMATTTAGAAATAATTTACTCGACTGAATTCACCGAAACTCTTGAAATTCTTGAAACTTGACAAATTCAGTTTTTCCAAAATTCTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10912</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>163989</contig_pos>
        <strand>+</strand>
        <context>GGGCGTTCAC[C/T]GGGATTGTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCTTTGGCTTCTGATACCAATTGTTGTTGGATTCATGTGGGCGTTCAC</left_flank>
        <right_flank>GGGATTGTTCTGTGTGCACCTACGGAAGAATTCACAGAGTTTATGAGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGCATCTACGATTTACCTGAATACCTTCACAGTTTCGATTTATGTGTAGCATCATTCGCAATGTTTTTCAACTGTTTTCTCATTTATCTTATCTTGACAAAGTCTCCTGCACAACTTGGAGTCTATCGGTATCTAATGGTTTTCATTTCTGTTTTTGAAGTGTTGTATTGCATACTGGAAGTTTGCCTGGTTCCGGTAATTATTCATTTATGAATTCTATCTCCTAAAGTTTGTCTATTTCAGATTCACTACTCTTACCGGTCGAGTGTTGTTGTCCTTATAAGGACATCTGACAAAATATTCAACAGACAGACACTCCTCTTCCTTGATGCATTTTATTGGGGATTTTTCGGATCATCCCTTTCAATTTTCGCAATTCATTTTGTATACAGATATCTGGTTATAAGTGGAAATCCGTTGCTCAGAACATTTCAATCTTGGAAATTCATTCTTTGGCTTCTGATACCAATTGTTGTTGGATTCATGTGGGCGTTCACTGGGATTGTTCTGTGTGCACCTACGGAAGAATTCACAGAGTTTATGAGAAAACCAATAAAAGAAGTATTCGATGAGGATATCGAAGAATTCGAATATCTTGGAGCATTCATGTACGAGAGAAGTTCCAAAAACAACAGTTTTCTAGTTTATTGGGGACCGATTGCTGGAATGATTATCATGTGCCTCACAGTATTTGCCTCCTTCATTGTAATTGTTGTTAGTGGAATCAAATGTTATCTACGCATCAAGCAATTGATAAGCAATGTCTCAACAACTTCATCTAGATGTCAAGCTCTTCAATCACAACTTTTCCACGCATTAGTCGTACAAACCTTAATACCGATGATTCTTCTTCATACTCCAGTAACTTTGAAGTTTGCGTTTGCTATATTTGATGCAGGACTTGGCCCGTATTGTTTCTTTATGTCAATGACGATTGCCTTATATCCAGCAATTGATCCACTCCCAAATTTCTTCCTCATAAGTCCTTATCGGAAAGC</canonical>
            <polymorphic>TAAGCATCTACGATTTACCTGAATACCTTCACAGTTTCGATTTATGTGTAGCATCATTCGCAATGTTTTTCAACTGTTTTCTCATTTATCTTATCTTGACAAAGTCTCCTGCACAACTTGGAGTCTATCGGTATCTAATGGTTTTCATTTCTGTTTTTGAAGTGTTGTATTGCATACTGGAAGTTTGCCTGGTTCCGGTAATTATTCATTTATGAATTCTATCTCCTAAAGTTTGTCTATTTCAGATTCACTACTCTTACCGGTCGAGTGTTGTTGTCCTTATAAGGACATCTGACAAAATATTCAACAGACAGACACTCCTCTTCCTTGATGCATTTTATTGGGGATTTTTCGGATCATCCCTTTCAATTTTCGCAATTCATTTTGTATACAGATATCTGGTTATAAGTGGAAATCCGTTGCTCAGAACATTTCAATCTTGGAAATTCATTCTTTGGCTTCTGATACCAATTGTTGTTGGATTCATGTGGGCGTTCACYGGGATTGTTCTGTGTGCACCTACGGAAGAATTCACAGAGTTTATGAGAAAACCAATAAAAGAAGTATTCGATGAGGATATCGAAGAATTCGAATATCTTGGAGCATTCATGTACGAGAGAAGTTCCAAAAACAACAGTTTTCTAGTTTATTGGGGACCGATTGCTGGAATGATTATCATGTGCCTCACAGTATTTGCCTCCTTCATTGTAATTGTTGTTAGTGGAATCAAATGTTATCTACGCATCAAGCAATTGATAAGCAATGTCTCAACAACTTCATCTAGATGTCAAGCTCTTCAATCACAACTTTTCCACGCATTAGTCGTACAAACCTTAATACCGATGATTCTTCTTCATACTCCAGTAACTTTGAAGTTTGCGTTTGCTATATTTGATGCAGGACTTGGCCCGTATTGTTTCTTTATGTCAATGACGATTGCCTTATATCCAGCAATTGATCCACTCCCAAATTTCTTCCTCATAAGTCCTTATCGGAAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTTCCTTGATGCATTTTATT</pcr_primer_p1>
		<pcr_primer_p2>CGAATACTTCTTTTATTGGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTTCCTTGATGCATTTTATTGGGGATTTTTCGGATCATCCCTTTCAATTTTCGCAATTCATTTTGTATACAGATATCTGGTTATAAGTGGAAATCCGTTGCTCAGAACATTTCAATCTTGGAAATTCATTCTTTGGCTTCTGATACCAATTGTTGTTGGATTCATGTGGGCGTTCACTGGGATTGTTCTGTGTGCACCTACGGAAGAATTCACAGAGTTTATGAGAAAACCAATAAAAGAAGTATTCG</canonical_amplicon>
		<polymorphic_amplicon>CTCTTCCTTGATGCATTTTATTGGGGATTTTTCGGATCATCCCTTTCAATTTTCGCAATTCATTTTGTATACAGATATCTGGTTATAAGTGGAAATCCGTTGCTCAGAACATTTCAATCTTGGAAATTCATTCTTTGGCTTCTGATACCAATTGTTGTTGGATTCATGTGGGCGTTCACYGGGATTGTTCTGTGTGCACCTACGGAAGAATTCACAGAGTTTATGAGAAAACCAATAAAAGAAGTATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10913</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>164142</contig_pos>
        <strand>+</strand>
        <context>TAGTTTATTG[C/G]GGACCGATTG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCATTCATGTACGAGAGAAGTTCCAAAAACAACAGTTTTCTAGTTTATTG</left_flank>
        <right_flank>GGACCGATTGCTGGAATGATTATCATGTGCCTCACAGTATTTGCCTCCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTGAAGTGTTGTATTGCATACTGGAAGTTTGCCTGGTTCCGGTAATTATTCATTTATGAATTCTATCTCCTAAAGTTTGTCTATTTCAGATTCACTACTCTTACCGGTCGAGTGTTGTTGTCCTTATAAGGACATCTGACAAAATATTCAACAGACAGACACTCCTCTTCCTTGATGCATTTTATTGGGGATTTTTCGGATCATCCCTTTCAATTTTCGCAATTCATTTTGTATACAGATATCTGGTTATAAGTGGAAATCCGTTGCTCAGAACATTTCAATCTTGGAAATTCATTCTTTGGCTTCTGATACCAATTGTTGTTGGATTCATGTGGGCGTTCACTGGGATTGTTCTGTGTGCACCTACGGAAGAATTCACAGAGTTTATGAGAAAACCAATAAAAGAAGTATTCGATGAGGATATCGAAGAATTCGAATATCTTGGAGCATTCATGTACGAGAGAAGTTCCAAAAACAACAGTTTTCTAGTTTATTGGGGACCGATTGCTGGAATGATTATCATGTGCCTCACAGTATTTGCCTCCTTCATTGTAATTGTTGTTAGTGGAATCAAATGTTATCTACGCATCAAGCAATTGATAAGCAATGTCTCAACAACTTCATCTAGATGTCAAGCTCTTCAATCACAACTTTTCCACGCATTAGTCGTACAAACCTTAATACCGATGATTCTTCTTCATACTCCAGTAACTTTGAAGTTTGCGTTTGCTATATTTGATGCAGGACTTGGCCCGTATTGTTTCTTTATGTCAATGACGATTGCCTTATATCCAGCAATTGATCCACTCCCAAATTTCTTCCTCATAAGTCCTTATCGGAAAGCAATTAAAAGTGAGGAAAATTAAATACCGTAAAACCTGTAATAGAAGGGATCATTTGTCTTTGAACTTTGAGCCAAGTTTTCTCGATTCCTATCAACGGTATCAAAAATATGTCAACTGATAAAATATTTATCATAATATCAGAAGTGTTTTGT</canonical>
            <polymorphic>TTTTTGAAGTGTTGTATTGCATACTGGAAGTTTGCCTGGTTCCGGTAATTATTCATTTATGAATTCTATCTCCTAAAGTTTGTCTATTTCAGATTCACTACTCTTACCGGTCGAGTGTTGTTGTCCTTATAAGGACATCTGACAAAATATTCAACAGACAGACACTCCTCTTCCTTGATGCATTTTATTGGGGATTTTTCGGATCATCCCTTTCAATTTTCGCAATTCATTTTGTATACAGATATCTGGTTATAAGTGGAAATCCGTTGCTCAGAACATTTCAATCTTGGAAATTCATTCTTTGGCTTCTGATACCAATTGTTGTTGGATTCATGTGGGCGTTCACTGGGATTGTTCTGTGTGCACCTACGGAAGAATTCACAGAGTTTATGAGAAAACCAATAAAAGAAGTATTCGATGAGGATATCGAAGAATTCGAATATCTTGGAGCATTCATGTACGAGAGAAGTTCCAAAAACAACAGTTTTCTAGTTTATTGSGGACCGATTGCTGGAATGATTATCATGTGCCTCACAGTATTTGCCTCCTTCATTGTAATTGTTGTTAGTGGAATCAAATGTTATCTACGCATCAAGCAATTGATAAGCAATGTCTCAACAACTTCATCTAGATGTCAAGCTCTTCAATCACAACTTTTCCACGCATTAGTCGTACAAACCTTAATACCGATGATTCTTCTTCATACTCCAGTAACTTTGAAGTTTGCGTTTGCTATATTTGATGCAGGACTTGGCCCGTATTGTTTCTTTATGTCAATGACGATTGCCTTATATCCAGCAATTGATCCACTCCCAAATTTCTTCCTCATAAGTCCTTATCGGAAAGCAATTAAAAGTGAGGAAAATTAAATACCGTAAAACCTGTAATAGAAGGGATCATTTGTCTTTGAACTTTGAGCCAAGTTTTCTCGATTCCTATCAACGGTATCAAAAATATGTCAACTGATAAAATATTTATCATAATATCAGAAGTGTTTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>498 462 40</canonical_bands>
                <polymorphic_bands>960 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTCACAGAGTTTATGAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAGTTGTTGAGACATTGCTTATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATTCACAGAGTTTATGAGAAAACCAATAAAAGAAGTATTCGATGAGGATATCGAAGAATTCGAATATCTTGGAGCATTCATGTACGAGAGAAGTTCCAAAAACAACAGTTTTCTAGTTTATTGGGGACCGATTGCTGGAATGATTATCATGTGCCTCACAGTATTTGCCTCCTTCATTGTAATTGTTGTTAGTGGAATCAAATGTTATCTACGCATCAAGCAATTGATAAGCAATGTCTCAACAACTT</canonical_amplicon>
		<polymorphic_amplicon>GAATTCACAGAGTTTATGAGAAAACCAATAAAAGAAGTATTCGATGAGGATATCGAAGAATTCGAATATCTTGGAGCATTCATGTACGAGAGAAGTTCCAAAAACAACAGTTTTCTAGTTTATTGSGGACCGATTGCTGGAATGATTATCATGTGCCTCACAGTATTTGCCTCCTTCATTGTAATTGTTGTTAGTGGAATCAAATGTTATCTACGCATCAAGCAATTGATAAGCAATGTCTCAACAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10914</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>210664</contig_pos>
        <strand>+</strand>
        <context>CGCGATTCTC[G/T]GTATCTCCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCATTATAGCTGACGATAACGAAGTAACATTGAATACACACGCGATTCTC</left_flank>
        <right_flank>GTATCTCCTCGGAGTATTGAATTTCTGGTAAACAGTCTACGCAGCTGATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAAAATACAAGCGAACCATAAACTAAACCGCAGAAGAGTGAGTACAGTAACCAAACGCCTACTCCTTTCCCACTGAATTTTTTCGCAATTTTAGGATTAACAAGTGTATAGTAACGGAATAAAAACTGAACAGCAATTAGAGAAACCATCCAAAGGTAGAAGCTGGCGTAGATGACAAGTGCCACTTGAAGAAATTTTTGAGGAACTTCTAGCCATGTATTCAGGCTGAAGAATATGAAACCTTTATTGTAATTGTGAACAAATGGACGAGCTATAAGTTCCCAAGAAGAAAACATAATTCCAATCGTTGAAAATATAAGAACCATTGCCTTGTATGTTCCAGTGACTCTTTTGATATGGAAAACTGTTAGAAAAATGAGATATGAGTTTACAATAGTGACACTTGTAAATCCACATTTTGTGAATGTATCCATAACTTCGTAAAACCGCATTATAGCTGACGATAACGAAGTAACATTGAATACACACGCGATTCTCTGTATCTCCTCGGAGTATTGAATTTCTGGTAAACAGTCTACGCAGCTGATACTATCAACAACTTAACACAGGCCCCAGGAGATCTCAGCACATGATCTAGACAAAGACTTGAACTGAAAAGTACCGTAATAGAAGCCCACCCAAACCGTTAACTTTGAGCTCAATTATCTCGCTTCCTGTAAAAGATATCGGAAAACGAACAACTAACAAAAAACTTTTTATAATGTCAAAGGTATTTTTACAGTTGACTCCTTTTTGATATCGTTTACAGAGCCTAATTATTTTTCCCCCCAGGGTTGTTTCGGCTGTTTGATTGGCTGTAACTATGGCTAGAAGAGATATTTCAATATGAAAATTTGTCTCCTTATGTAATCGAGTACGTAGATTTCGAAAATGTAATTGTTTTTTACTTTCGAAAATGTAATTTTTTCACTGAAAAATCTACAAGAGAAAAGAAAAAAGCGAAAAACCGAAGTGGGCGGCAGAAAAATGAATGGTAAA</canonical>
            <polymorphic>GTAAAATACAAGCGAACCATAAACTAAACCGCAGAAGAGTGAGTACAGTAACCAAACGCCTACTCCTTTCCCACTGAATTTTTTCGCAATTTTAGGATTAACAAGTGTATAGTAACGGAATAAAAACTGAACAGCAATTAGAGAAACCATCCAAAGGTAGAAGCTGGCGTAGATGACAAGTGCCACTTGAAGAAATTTTTGAGGAACTTCTAGCCATGTATTCAGGCTGAAGAATATGAAACCTTTATTGTAATTGTGAACAAATGGACGAGCTATAAGTTCCCAAGAAGAAAACATAATTCCAATCGTTGAAAATATAAGAACCATTGCCTTGTATGTTCCAGTGACTCTTTTGATATGGAAAACTGTTAGAAAAATGAGATATGAGTTTACAATAGTGACACTTGTAAATCCACATTTTGTGAATGTATCCATAACTTCGTAAAACCGCATTATAGCTGACGATAACGAAGTAACATTGAATACACACGCGATTCTCKGTATCTCCTCGGAGTATTGAATTTCTGGTAAACAGTCTACGCAGCTGATACTATCAACAACTTAACACAGGCCCCAGGAGATCTCAGCACATGATCTAGACAAAGACTTGAACTGAAAAGTACCGTAATAGAAGCCCACCCAAACCGTTAACTTTGAGCTCAATTATCTCGCTTCCTGTAAAAGATATCGGAAAACGAACAACTAACAAAAAACTTTTTATAATGTCAAAGGTATTTTTACAGTTGACTCCTTTTTGATATCGTTTACAGAGCCTAATTATTTTTCCCCCCAGGGTTGTTTCGGCTGTTTGATTGGCTGTAACTATGGCTAGAAGAGATATTTCAATATGAAAATTTGTCTCCTTATGTAATCGAGTACGTAGATTTCGAAAATGTAATTGTTTTTTACTTTCGAAAATGTAATTTTTTCACTGAAAAATCTACAAGAGAAAAGAAAAAAGCGAAAAACCGAAGTGGGCGGCAGAAAAATGAATGGTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGTATGTTCCAGTGACTCTTT</pcr_primer_p1>
		<pcr_primer_p2>GCCTGTGTTAAGTTGTTGATAGT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CTTGTATGTTCCAGTGACTCTTTTGATATGGAAAACTGTTAGAAAAATGAGATATGAGTTTACAATAGTGACACTTGTAAATCCACATTTTGTGAATGTATCCATAACTTCGTAAAACCGCATTATAGCTGACGATAACGAAGTAACATTGAATACACACGCGATTCTCTGTATCTCCTCGGAGTATTGAATTTCTGGTAAACAGTCTACGCAGCTGATACTATCAACAACTTAACACAGGC</canonical_amplicon>
		<polymorphic_amplicon>CTTGTATGTTCCAGTGACTCTTTTGATATGGAAAACTGTTAGAAAAATGAGATATGAGTTTACAATAGTGACACTTGTAAATCCACATTTTGTGAATGTATCCATAACTTCGTAAAACCGCATTATAGCTGACGATAACGAAGTAACATTGAATACACACGCGATTCTCKGTATCTCCTCGGAGTATTGAATTTCTGGTAAACAGTCTACGCAGCTGATACTATCAACAACTTAACACAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10915</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>210652</contig_pos>
        <strand>+</strand>
        <context>ATTGAATACA[A/C]ACGCGATTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTCGTAAAACCGCATTATAGCTGACGATAACGAAGTAACATTGAATACA</left_flank>
        <right_flank>ACGCGATTCTCTGTATCTCCTCGGAGTATTGAATTTCTGGTAAACAGTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGTTGTCCGAAGTAAAATACAAGCGAACCATAAACTAAACCGCAGAAGAGTGAGTACAGTAACCAAACGCCTACTCCTTTCCCACTGAATTTTTTCGCAATTTTAGGATTAACAAGTGTATAGTAACGGAATAAAAACTGAACAGCAATTAGAGAAACCATCCAAAGGTAGAAGCTGGCGTAGATGACAAGTGCCACTTGAAGAAATTTTTGAGGAACTTCTAGCCATGTATTCAGGCTGAAGAATATGAAACCTTTATTGTAATTGTGAACAAATGGACGAGCTATAAGTTCCCAAGAAGAAAACATAATTCCAATCGTTGAAAATATAAGAACCATTGCCTTGTATGTTCCAGTGACTCTTTTGATATGGAAAACTGTTAGAAAAATGAGATATGAGTTTACAATAGTGACACTTGTAAATCCACATTTTGTGAATGTATCCATAACTTCGTAAAACCGCATTATAGCTGACGATAACGAAGTAACATTGAATACACACGCGATTCTCTGTATCTCCTCGGAGTATTGAATTTCTGGTAAACAGTCTACGCAGCTGATACTATCAACAACTTAACACAGGCCCCAGGAGATCTCAGCACATGATCTAGACAAAGACTTGAACTGAAAAGTACCGTAATAGAAGCCCACCCAAACCGTTAACTTTGAGCTCAATTATCTCGCTTCCTGTAAAAGATATCGGAAAACGAACAACTAACAAAAAACTTTTTATAATGTCAAAGGTATTTTTACAGTTGACTCCTTTTTGATATCGTTTACAGAGCCTAATTATTTTTCCCCCCAGGGTTGTTTCGGCTGTTTGATTGGCTGTAACTATGGCTAGAAGAGATATTTCAATATGAAAATTTGTCTCCTTATGTAATCGAGTACGTAGATTTCGAAAATGTAATTGTTTTTTACTTTCGAAAATGTAATTTTTTCACTGAAAAATCTACAAGAGAAAAGAAAAAAGCGAAAAACCGAAGTGGGCGGCAGAAAA</canonical>
            <polymorphic>AGGTTGTCCGAAGTAAAATACAAGCGAACCATAAACTAAACCGCAGAAGAGTGAGTACAGTAACCAAACGCCTACTCCTTTCCCACTGAATTTTTTCGCAATTTTAGGATTAACAAGTGTATAGTAACGGAATAAAAACTGAACAGCAATTAGAGAAACCATCCAAAGGTAGAAGCTGGCGTAGATGACAAGTGCCACTTGAAGAAATTTTTGAGGAACTTCTAGCCATGTATTCAGGCTGAAGAATATGAAACCTTTATTGTAATTGTGAACAAATGGACGAGCTATAAGTTCCCAAGAAGAAAACATAATTCCAATCGTTGAAAATATAAGAACCATTGCCTTGTATGTTCCAGTGACTCTTTTGATATGGAAAACTGTTAGAAAAATGAGATATGAGTTTACAATAGTGACACTTGTAAATCCACATTTTGTGAATGTATCCATAACTTCGTAAAACCGCATTATAGCTGACGATAACGAAGTAACATTGAATACAMACGCGATTCTCTGTATCTCCTCGGAGTATTGAATTTCTGGTAAACAGTCTACGCAGCTGATACTATCAACAACTTAACACAGGCCCCAGGAGATCTCAGCACATGATCTAGACAAAGACTTGAACTGAAAAGTACCGTAATAGAAGCCCACCCAAACCGTTAACTTTGAGCTCAATTATCTCGCTTCCTGTAAAAGATATCGGAAAACGAACAACTAACAAAAAACTTTTTATAATGTCAAAGGTATTTTTACAGTTGACTCCTTTTTGATATCGTTTACAGAGCCTAATTATTTTTCCCCCCAGGGTTGTTTCGGCTGTTTGATTGGCTGTAACTATGGCTAGAAGAGATATTTCAATATGAAAATTTGTCTCCTTATGTAATCGAGTACGTAGATTTCGAAAATGTAATTGTTTTTTACTTTCGAAAATGTAATTTTTTCACTGAAAAATCTACAAGAGAAAAGAAAAAAGCGAAAAACCGAAGTGGGCGGCAGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>293 88 78 75 73 63 54 53 49 45 34 32 22 12 12 9 3 3 2</canonical_bands>
                <polymorphic_bands>293 143 88 75 73 54 53 49 45 34 32 22 12 12 9 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTGTATGTTCCAGTGACTCTTT</pcr_primer_p1>
		<pcr_primer_p2>GCCTGTGTTAAGTTGTTGATAGT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CTTGTATGTTCCAGTGACTCTTTTGATATGGAAAACTGTTAGAAAAATGAGATATGAGTTTACAATAGTGACACTTGTAAATCCACATTTTGTGAATGTATCCATAACTTCGTAAAACCGCATTATAGCTGACGATAACGAAGTAACATTGAATACACACGCGATTCTCTGTATCTCCTCGGAGTATTGAATTTCTGGTAAACAGTCTACGCAGCTGATACTATCAACAACTTAACACAGGC</canonical_amplicon>
		<polymorphic_amplicon>CTTGTATGTTCCAGTGACTCTTTTGATATGGAAAACTGTTAGAAAAATGAGATATGAGTTTACAATAGTGACACTTGTAAATCCACATTTTGTGAATGTATCCATAACTTCGTAAAACCGCATTATAGCTGACGATAACGAAGTAACATTGAATACAMACGCGATTCTCTGTATCTCCTCGGAGTATTGAATTTCTGGTAAACAGTCTACGCAGCTGATACTATCAACAACTTAACACAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10916</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>210619</contig_pos>
        <strand>+</strand>
        <context>AAACCGCATT[A/T]TAGCTGACGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGTAAATCCACATTTTGTGAATGTATCCATAACTTCGTAAAACCGCATT</left_flank>
        <right_flank>TAGCTGACGATAACGAAGTAACATTGAATACACACGCGATTCTCTGTATC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTTACTTCATGTACTCATCTGAATATTCATCAGGTTGTCCGAAGTAAAATACAAGCGAACCATAAACTAAACCGCAGAAGAGTGAGTACAGTAACCAAACGCCTACTCCTTTCCCACTGAATTTTTTCGCAATTTTAGGATTAACAAGTGTATAGTAACGGAATAAAAACTGAACAGCAATTAGAGAAACCATCCAAAGGTAGAAGCTGGCGTAGATGACAAGTGCCACTTGAAGAAATTTTTGAGGAACTTCTAGCCATGTATTCAGGCTGAAGAATATGAAACCTTTATTGTAATTGTGAACAAATGGACGAGCTATAAGTTCCCAAGAAGAAAACATAATTCCAATCGTTGAAAATATAAGAACCATTGCCTTGTATGTTCCAGTGACTCTTTTGATATGGAAAACTGTTAGAAAAATGAGATATGAGTTTACAATAGTGACACTTGTAAATCCACATTTTGTGAATGTATCCATAACTTCGTAAAACCGCATTATAGCTGACGATAACGAAGTAACATTGAATACACACGCGATTCTCTGTATCTCCTCGGAGTATTGAATTTCTGGTAAACAGTCTACGCAGCTGATACTATCAACAACTTAACACAGGCCCCAGGAGATCTCAGCACATGATCTAGACAAAGACTTGAACTGAAAAGTACCGTAATAGAAGCCCACCCAAACCGTTAACTTTGAGCTCAATTATCTCGCTTCCTGTAAAAGATATCGGAAAACGAACAACTAACAAAAAACTTTTTATAATGTCAAAGGTATTTTTACAGTTGACTCCTTTTTGATATCGTTTACAGAGCCTAATTATTTTTCCCCCCAGGGTTGTTTCGGCTGTTTGATTGGCTGTAACTATGGCTAGAAGAGATATTTCAATATGAAAATTTGTCTCCTTATGTAATCGAGTACGTAGATTTCGAAAATGTAATTGTTTTTTACTTTCGAAAATGTAATTTTTTCACTGAAAAATCTACAAGAGAAAAGA</canonical>
            <polymorphic>TACTTACTTCATGTACTCATCTGAATATTCATCAGGTTGTCCGAAGTAAAATACAAGCGAACCATAAACTAAACCGCAGAAGAGTGAGTACAGTAACCAAACGCCTACTCCTTTCCCACTGAATTTTTTCGCAATTTTAGGATTAACAAGTGTATAGTAACGGAATAAAAACTGAACAGCAATTAGAGAAACCATCCAAAGGTAGAAGCTGGCGTAGATGACAAGTGCCACTTGAAGAAATTTTTGAGGAACTTCTAGCCATGTATTCAGGCTGAAGAATATGAAACCTTTATTGTAATTGTGAACAAATGGACGAGCTATAAGTTCCCAAGAAGAAAACATAATTCCAATCGTTGAAAATATAAGAACCATTGCCTTGTATGTTCCAGTGACTCTTTTGATATGGAAAACTGTTAGAAAAATGAGATATGAGTTTACAATAGTGACACTTGTAAATCCACATTTTGTGAATGTATCCATAACTTCGTAAAACCGCATTWTAGCTGACGATAACGAAGTAACATTGAATACACACGCGATTCTCTGTATCTCCTCGGAGTATTGAATTTCTGGTAAACAGTCTACGCAGCTGATACTATCAACAACTTAACACAGGCCCCAGGAGATCTCAGCACATGATCTAGACAAAGACTTGAACTGAAAAGTACCGTAATAGAAGCCCACCCAAACCGTTAACTTTGAGCTCAATTATCTCGCTTCCTGTAAAAGATATCGGAAAACGAACAACTAACAAAAAACTTTTTATAATGTCAAAGGTATTTTTACAGTTGACTCCTTTTTGATATCGTTTACAGAGCCTAATTATTTTTCCCCCCAGGGTTGTTTCGGCTGTTTGATTGGCTGTAACTATGGCTAGAAGAGATATTTCAATATGAAAATTTGTCTCCTTATGTAATCGAGTACGTAGATTTCGAAAATGTAATTGTTTTTTACTTTCGAAAATGTAATTTTTTCACTGAAAAATCTACAAGAGAAAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGTATGTTCCAGTGACTCTTT</pcr_primer_p1>
		<pcr_primer_p2>GCCTGTGTTAAGTTGTTGATAGT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CTTGTATGTTCCAGTGACTCTTTTGATATGGAAAACTGTTAGAAAAATGAGATATGAGTTTACAATAGTGACACTTGTAAATCCACATTTTGTGAATGTATCCATAACTTCGTAAAACCGCATTATAGCTGACGATAACGAAGTAACATTGAATACACACGCGATTCTCTGTATCTCCTCGGAGTATTGAATTTCTGGTAAACAGTCTACGCAGCTGATACTATCAACAACTTAACACAGGC</canonical_amplicon>
		<polymorphic_amplicon>CTTGTATGTTCCAGTGACTCTTTTGATATGGAAAACTGTTAGAAAAATGAGATATGAGTTTACAATAGTGACACTTGTAAATCCACATTTTGTGAATGTATCCATAACTTCGTAAAACCGCATTWTAGCTGACGATAACGAAGTAACATTGAATACACACGCGATTCTCTGTATCTCCTCGGAGTATTGAATTTCTGGTAAACAGTCTACGCAGCTGATACTATCAACAACTTAACACAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10917</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>210572</contig_pos>
        <strand>+</strand>
        <context>GTGACACTTG[C/T]AAATCCACAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGGAAAACTGTTAGAAAAATGAGATATGAGTTTACAATAGTGACACTTG</left_flank>
        <right_flank>AAATCCACATTTTGTGAATGTATCCATAACTTCGTAAAACCGCATTATAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCATCTCTTCTCTGGAAAATATTAGTATTCTAAGAATAGGAGAGTTTACTTACTTCATGTACTCATCTGAATATTCATCAGGTTGTCCGAAGTAAAATACAAGCGAACCATAAACTAAACCGCAGAAGAGTGAGTACAGTAACCAAACGCCTACTCCTTTCCCACTGAATTTTTTCGCAATTTTAGGATTAACAAGTGTATAGTAACGGAATAAAAACTGAACAGCAATTAGAGAAACCATCCAAAGGTAGAAGCTGGCGTAGATGACAAGTGCCACTTGAAGAAATTTTTGAGGAACTTCTAGCCATGTATTCAGGCTGAAGAATATGAAACCTTTATTGTAATTGTGAACAAATGGACGAGCTATAAGTTCCCAAGAAGAAAACATAATTCCAATCGTTGAAAATATAAGAACCATTGCCTTGTATGTTCCAGTGACTCTTTTGATATGGAAAACTGTTAGAAAAATGAGATATGAGTTTACAATAGTGACACTTGTAAATCCACATTTTGTGAATGTATCCATAACTTCGTAAAACCGCATTATAGCTGACGATAACGAAGTAACATTGAATACACACGCGATTCTCTGTATCTCCTCGGAGTATTGAATTTCTGGTAAACAGTCTACGCAGCTGATACTATCAACAACTTAACACAGGCCCCAGGAGATCTCAGCACATGATCTAGACAAAGACTTGAACTGAAAAGTACCGTAATAGAAGCCCACCCAAACCGTTAACTTTGAGCTCAATTATCTCGCTTCCTGTAAAAGATATCGGAAAACGAACAACTAACAAAAAACTTTTTATAATGTCAAAGGTATTTTTACAGTTGACTCCTTTTTGATATCGTTTACAGAGCCTAATTATTTTTCCCCCCAGGGTTGTTTCGGCTGTTTGATTGGCTGTAACTATGGCTAGAAGAGATATTTCAATATGAAAATTTGTCTCCTTATGTAATCGAGTACGTAGATTTCGAAAATGTAATTGTTTTTTA</canonical>
            <polymorphic>ATCATCTCTTCTCTGGAAAATATTAGTATTCTAAGAATAGGAGAGTTTACTTACTTCATGTACTCATCTGAATATTCATCAGGTTGTCCGAAGTAAAATACAAGCGAACCATAAACTAAACCGCAGAAGAGTGAGTACAGTAACCAAACGCCTACTCCTTTCCCACTGAATTTTTTCGCAATTTTAGGATTAACAAGTGTATAGTAACGGAATAAAAACTGAACAGCAATTAGAGAAACCATCCAAAGGTAGAAGCTGGCGTAGATGACAAGTGCCACTTGAAGAAATTTTTGAGGAACTTCTAGCCATGTATTCAGGCTGAAGAATATGAAACCTTTATTGTAATTGTGAACAAATGGACGAGCTATAAGTTCCCAAGAAGAAAACATAATTCCAATCGTTGAAAATATAAGAACCATTGCCTTGTATGTTCCAGTGACTCTTTTGATATGGAAAACTGTTAGAAAAATGAGATATGAGTTTACAATAGTGACACTTGYAAATCCACATTTTGTGAATGTATCCATAACTTCGTAAAACCGCATTATAGCTGACGATAACGAAGTAACATTGAATACACACGCGATTCTCTGTATCTCCTCGGAGTATTGAATTTCTGGTAAACAGTCTACGCAGCTGATACTATCAACAACTTAACACAGGCCCCAGGAGATCTCAGCACATGATCTAGACAAAGACTTGAACTGAAAAGTACCGTAATAGAAGCCCACCCAAACCGTTAACTTTGAGCTCAATTATCTCGCTTCCTGTAAAAGATATCGGAAAACGAACAACTAACAAAAAACTTTTTATAATGTCAAAGGTATTTTTACAGTTGACTCCTTTTTGATATCGTTTACAGAGCCTAATTATTTTTCCCCCCAGGGTTGTTTCGGCTGTTTGATTGGCTGTAACTATGGCTAGAAGAGATATTTCAATATGAAAATTTGTCTCCTTATGTAATCGAGTACGTAGATTTCGAAAATGTAATTGTTTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGTATGTTCCAGTGACTCTTT</pcr_primer_p1>
		<pcr_primer_p2>GCCTGTGTTAAGTTGTTGATAGT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CTTGTATGTTCCAGTGACTCTTTTGATATGGAAAACTGTTAGAAAAATGAGATATGAGTTTACAATAGTGACACTTGTAAATCCACATTTTGTGAATGTATCCATAACTTCGTAAAACCGCATTATAGCTGACGATAACGAAGTAACATTGAATACACACGCGATTCTCTGTATCTCCTCGGAGTATTGAATTTCTGGTAAACAGTCTACGCAGCTGATACTATCAACAACTTAACACAGGC</canonical_amplicon>
		<polymorphic_amplicon>CTTGTATGTTCCAGTGACTCTTTTGATATGGAAAACTGTTAGAAAAATGAGATATGAGTTTACAATAGTGACACTTGYAAATCCACATTTTGTGAATGTATCCATAACTTCGTAAAACCGCATTATAGCTGACGATAACGAAGTAACATTGAATACACACGCGATTCTCTGTATCTCCTCGGAGTATTGAATTTCTGGTAAACAGTCTACGCAGCTGATACTATCAACAACTTAACACAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10918</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>210305</contig_pos>
        <strand>+</strand>
        <context>ACAGCAATTA[A/G]AGAAACCATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTAGGATTAACAAGTGTATAGTAACGGAATAAAAACTGAACAGCAATTA</left_flank>
        <right_flank>AGAAACCATCCAAAGGTAGAAGCTGGCGTAGATGACAAGTGCCACTTGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTTTGTAGTTTCTTGTTGGGAATCGAACATCTCGCGAATTCCCGTGTCATGAATATGTGCATACGAAGACCGCAGTAAATGATGATAATATACTGGACAGCCACATTAAACCCGCCCAATATCAGAAACAAAACATTTATTCTTACTGATCCATCGGAATCCTAAAAACACGATTCTAAGGTTGGCCTAAGTATTTGACAATGACTCACATATGGGATCATAAGAATACGTGGCAACTCATCCACCACTAAACCATATGTTTGTATCATCTCTTCTCTGGAAAATATTAGTATTCTAAGAATAGGAGAGTTTACTTACTTCATGTACTCATCTGAATATTCATCAGGTTGTCCGAAGTAAAATACAAGCGAACCATAAACTAAACCGCAGAAGAGTGAGTACAGTAACCAAACGCCTACTCCTTTCCCACTGAATTTTTTCGCAATTTTAGGATTAACAAGTGTATAGTAACGGAATAAAAACTGAACAGCAATTAGAGAAACCATCCAAAGGTAGAAGCTGGCGTAGATGACAAGTGCCACTTGAAGAAATTTTTGAGGAACTTCTAGCCATGTATTCAGGCTGAAGAATATGAAACCTTTATTGTAATTGTGAACAAATGGACGAGCTATAAGTTCCCAAGAAGAAAACATAATTCCAATCGTTGAAAATATAAGAACCATTGCCTTGTATGTTCCAGTGACTCTTTTGATATGGAAAACTGTTAGAAAAATGAGATATGAGTTTACAATAGTGACACTTGTAAATCCACATTTTGTGAATGTATCCATAACTTCGTAAAACCGCATTATAGCTGACGATAACGAAGTAACATTGAATACACACGCGATTCTCTGTATCTCCTCGGAGTATTGAATTTCTGGTAAACAGTCTACGCAGCTGATACTATCAACAACTTAACACAGGCCCCAGGAGATCTCAGCACATGATCTAGACAAAGACTTGAACTGAAAAGTACCGTAATAGAAGCCCACCC</canonical>
            <polymorphic>TGTTTTTGTAGTTTCTTGTTGGGAATCGAACATCTCGCGAATTCCCGTGTCATGAATATGTGCATACGAAGACCGCAGTAAATGATGATAATATACTGGACAGCCACATTAAACCCGCCCAATATCAGAAACAAAACATTTATTCTTACTGATCCATCGGAATCCTAAAAACACGATTCTAAGGTTGGCCTAAGTATTTGACAATGACTCACATATGGGATCATAAGAATACGTGGCAACTCATCCACCACTAAACCATATGTTTGTATCATCTCTTCTCTGGAAAATATTAGTATTCTAAGAATAGGAGAGTTTACTTACTTCATGTACTCATCTGAATATTCATCAGGTTGTCCGAAGTAAAATACAAGCGAACCATAAACTAAACCGCAGAAGAGTGAGTACAGTAACCAAACGCCTACTCCTTTCCCACTGAATTTTTTCGCAATTTTAGGATTAACAAGTGTATAGTAACGGAATAAAAACTGAACAGCAATTARAGAAACCATCCAAAGGTAGAAGCTGGCGTAGATGACAAGTGCCACTTGAAGAAATTTTTGAGGAACTTCTAGCCATGTATTCAGGCTGAAGAATATGAAACCTTTATTGTAATTGTGAACAAATGGACGAGCTATAAGTTCCCAAGAAGAAAACATAATTCCAATCGTTGAAAATATAAGAACCATTGCCTTGTATGTTCCAGTGACTCTTTTGATATGGAAAACTGTTAGAAAAATGAGATATGAGTTTACAATAGTGACACTTGTAAATCCACATTTTGTGAATGTATCCATAACTTCGTAAAACCGCATTATAGCTGACGATAACGAAGTAACATTGAATACACACGCGATTCTCTGTATCTCCTCGGAGTATTGAATTTCTGGTAAACAGTCTACGCAGCTGATACTATCAACAACTTAACACAGGCCCCAGGAGATCTCAGCACATGATCTAGACAAAGACTTGAACTGAAAAGTACCGTAATAGAAGCCCACCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCGCAATTTTAGGATTAAC</pcr_primer_p1>
		<pcr_primer_p2>GCAATGGTTCTTATATTTTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCGCAATTTTAGGATTAACAAGTGTATAGTAACGGAATAAAAACTGAACAGCAATTAGAGAAACCATCCAAAGGTAGAAGCTGGCGTAGATGACAAGTGCCACTTGAAGAAATTTTTGAGGAACTTCTAGCCATGTATTCAGGCTGAAGAATATGAAACCTTTATTGTAATTGTGAACAAATGGACGAGCTATAAGTTCCCAAGAAGAAAACATAATTCCAATCGTTGAAAATATAAGAACCATTGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCGCAATTTTAGGATTAACAAGTGTATAGTAACGGAATAAAAACTGAACAGCAATTARAGAAACCATCCAAAGGTAGAAGCTGGCGTAGATGACAAGTGCCACTTGAAGAAATTTTTGAGGAACTTCTAGCCATGTATTCAGGCTGAAGAATATGAAACCTTTATTGTAATTGTGAACAAATGGACGAGCTATAAGTTCCCAAGAAGAAAACATAATTCCAATCGTTGAAAATATAAGAACCATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10919</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>219547</contig_pos>
        <strand>+</strand>
        <context>AACATTTTTA[A/G]TTTCAGTTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCACACAGGTCTTGTCGTGATATGCCTGTGAAAATGTAGAAACATTTTTA</left_flank>
        <right_flank>TTTCAGTTATTCCAGGTTAAAGTTTGTCTCACCTGAAAACTTCTTGCCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAACTGAATGCATCAGCTCGTGAATTGCAGTGTCATACTGGAATTAATAAGATCAATGCTCTAGAAATCGAGGAAAAAGAACCTGCAAACAACCATTGTCTAATGATAGTTCTTGTCGTCCACCAGCTCTTCCAACGTCCGAATAGCAACTGAAAAATGTTGAAAGTTTCCCCAAAAAGTGACTTCCGTAAACACTCAGTAGAAGACCACTTTATACTTGCACTTTGAGCTCAAGTATCTCCATTTCTATCAAAGAGATCAAAAATGAGTCAACTGATATGATATTTGTCATAATAGCACCAAAATTTTATCAGTTGACAAATTTTTGATTCATCGTATAGAAATTGGGATAAATGAACTTACAGTGCAATTATAACTTCTAAACTAACCCATCAATCTTTCCAATATACAAATAGTCATTATCTACAGCTGTTCGTGGAACAAATCTCACACAGGTCTTGTCGTGATATGCCTGTGAAAATGTAGAAACATTTTTAGTTTCAGTTATTCCAGGTTAAAGTTTGTCTCACCTGAAAACTTCTTGCCAAAACTGCTCTTTCTCTATCATTATACTGATTCGATATCACGTATGGAATCCTGCCGTTCGGCCATTTTCTTGTTCCAGTTATCACACCGTTCCTTCGCAAACTCTCACTGTTTTTTGAATCCTAAACTTATGATTTTTATTTCAAAATCCAAACTTCGAACATTCAACAAAATCGCATATTCACCCCAATCCTTTTTGACAAAAAAACGTCCGCCATTTTACCGGTTTTCCCGAGATTCATCGGTTTAAACGGGGCAGTTTCGTCTGGTTATTACAATGTCATCAACAATTTTTTCTCCCTTTTTGAATAACGTATTCATGCCCTTTTTCTCTTTTTCTCTCTTCATAAAATTCAAATTTTTCATGTCAGTCAAAATAGTGAAAGTCTCGATATTTTTTTTTATCGGGAGTGGATTATAGGGATTTGACCTGATGATCATTTGGGGATGAA</canonical>
            <polymorphic>ACCAACTGAATGCATCAGCTCGTGAATTGCAGTGTCATACTGGAATTAATAAGATCAATGCTCTAGAAATCGAGGAAAAAGAACCTGCAAACAACCATTGTCTAATGATAGTTCTTGTCGTCCACCAGCTCTTCCAACGTCCGAATAGCAACTGAAAAATGTTGAAAGTTTCCCCAAAAAGTGACTTCCGTAAACACTCAGTAGAAGACCACTTTATACTTGCACTTTGAGCTCAAGTATCTCCATTTCTATCAAAGAGATCAAAAATGAGTCAACTGATATGATATTTGTCATAATAGCACCAAAATTTTATCAGTTGACAAATTTTTGATTCATCGTATAGAAATTGGGATAAATGAACTTACAGTGCAATTATAACTTCTAAACTAACCCATCAATCTTTCCAATATACAAATAGTCATTATCTACAGCTGTTCGTGGAACAAATCTCACACAGGTCTTGTCGTGATATGCCTGTGAAAATGTAGAAACATTTTTARTTTCAGTTATTCCAGGTTAAAGTTTGTCTCACCTGAAAACTTCTTGCCAAAACTGCTCTTTCTCTATCATTATACTGATTCGATATCACGTATGGAATCCTGCCGTTCGGCCATTTTCTTGTTCCAGTTATCACACCGTTCCTTCGCAAACTCTCACTGTTTTTTGAATCCTAAACTTATGATTTTTATTTCAAAATCCAAACTTCGAACATTCAACAAAATCGCATATTCACCCCAATCCTTTTTGACAAAAAAACGTCCGCCATTTTACCGGTTTTCCCGAGATTCATCGGTTTAAACGGGGCAGTTTCGTCTGGTTATTACAATGTCATCAACAATTTTTTCTCCCTTTTTGAATAACGTATTCATGCCCTTTTTCTCTTTTTCTCTCTTCATAAAATTCAAATTTTTCATGTCAGTCAAAATAGTGAAAGTCTCGATATTTTTTTTTATCGGGAGTGGATTATAGGGATTTGACCTGATGATCATTTGGGGATGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCCATCAATCTTTCCAATATAC</pcr_primer_p1>
		<pcr_primer_p2>TGTGATAACTGGAACAAGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACCCATCAATCTTTCCAATATACAAATAGTCATTATCTACAGCTGTTCGTGGAACAAATCTCACACAGGTCTTGTCGTGATATGCCTGTGAAAATGTAGAAACATTTTTAGTTTCAGTTATTCCAGGTTAAAGTTTGTCTCACCTGAAAACTTCTTGCCAAAACTGCTCTTTCTCTATCATTATACTGATTCGATATCACGTATGGAATCCTGCCGTTCGGCCATTTTCTTGTTCCAGTTATCACA</canonical_amplicon>
		<polymorphic_amplicon>ACCCATCAATCTTTCCAATATACAAATAGTCATTATCTACAGCTGTTCGTGGAACAAATCTCACACAGGTCTTGTCGTGATATGCCTGTGAAAATGTAGAAACATTTTTARTTTCAGTTATTCCAGGTTAAAGTTTGTCTCACCTGAAAACTTCTTGCCAAAACTGCTCTTTCTCTATCATTATACTGATTCGATATCACGTATGGAATCCTGCCGTTCGGCCATTTTCTTGTTCCAGTTATCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10920</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>219628</contig_pos>
        <strand>+</strand>
        <context>TATACTGATT[C/T]GATATCACGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCTGAAAACTTCTTGCCAAAACTGCTCTTTCTCTATCATTATACTGATT</left_flank>
        <right_flank>GATATCACGTATGGAATCCTGCCGTTCGGCCATTTTCTTGTTCCAGTTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCTGCAAACAACCATTGTCTAATGATAGTTCTTGTCGTCCACCAGCTCTTCCAACGTCCGAATAGCAACTGAAAAATGTTGAAAGTTTCCCCAAAAAGTGACTTCCGTAAACACTCAGTAGAAGACCACTTTATACTTGCACTTTGAGCTCAAGTATCTCCATTTCTATCAAAGAGATCAAAAATGAGTCAACTGATATGATATTTGTCATAATAGCACCAAAATTTTATCAGTTGACAAATTTTTGATTCATCGTATAGAAATTGGGATAAATGAACTTACAGTGCAATTATAACTTCTAAACTAACCCATCAATCTTTCCAATATACAAATAGTCATTATCTACAGCTGTTCGTGGAACAAATCTCACACAGGTCTTGTCGTGATATGCCTGTGAAAATGTAGAAACATTTTTAGTTTCAGTTATTCCAGGTTAAAGTTTGTCTCACCTGAAAACTTCTTGCCAAAACTGCTCTTTCTCTATCATTATACTGATTCGATATCACGTATGGAATCCTGCCGTTCGGCCATTTTCTTGTTCCAGTTATCACACCGTTCCTTCGCAAACTCTCACTGTTTTTTGAATCCTAAACTTATGATTTTTATTTCAAAATCCAAACTTCGAACATTCAACAAAATCGCATATTCACCCCAATCCTTTTTGACAAAAAAACGTCCGCCATTTTACCGGTTTTCCCGAGATTCATCGGTTTAAACGGGGCAGTTTCGTCTGGTTATTACAATGTCATCAACAATTTTTTCTCCCTTTTTGAATAACGTATTCATGCCCTTTTTCTCTTTTTCTCTCTTCATAAAATTCAAATTTTTCATGTCAGTCAAAATAGTGAAAGTCTCGATATTTTTTTTTATCGGGAGTGGATTATAGGGATTTGACCTGATGATCATTTGGGGATGAATCACATATCATACCAATTTCCAAGCTGCTTTTCCACGAATGTCTCCTTTTTTGTAGACTTGTTTCCAAAGAATTGAGCCAG</canonical>
            <polymorphic>AACCTGCAAACAACCATTGTCTAATGATAGTTCTTGTCGTCCACCAGCTCTTCCAACGTCCGAATAGCAACTGAAAAATGTTGAAAGTTTCCCCAAAAAGTGACTTCCGTAAACACTCAGTAGAAGACCACTTTATACTTGCACTTTGAGCTCAAGTATCTCCATTTCTATCAAAGAGATCAAAAATGAGTCAACTGATATGATATTTGTCATAATAGCACCAAAATTTTATCAGTTGACAAATTTTTGATTCATCGTATAGAAATTGGGATAAATGAACTTACAGTGCAATTATAACTTCTAAACTAACCCATCAATCTTTCCAATATACAAATAGTCATTATCTACAGCTGTTCGTGGAACAAATCTCACACAGGTCTTGTCGTGATATGCCTGTGAAAATGTAGAAACATTTTTAGTTTCAGTTATTCCAGGTTAAAGTTTGTCTCACCTGAAAACTTCTTGCCAAAACTGCTCTTTCTCTATCATTATACTGATTYGATATCACGTATGGAATCCTGCCGTTCGGCCATTTTCTTGTTCCAGTTATCACACCGTTCCTTCGCAAACTCTCACTGTTTTTTGAATCCTAAACTTATGATTTTTATTTCAAAATCCAAACTTCGAACATTCAACAAAATCGCATATTCACCCCAATCCTTTTTGACAAAAAAACGTCCGCCATTTTACCGGTTTTCCCGAGATTCATCGGTTTAAACGGGGCAGTTTCGTCTGGTTATTACAATGTCATCAACAATTTTTTCTCCCTTTTTGAATAACGTATTCATGCCCTTTTTCTCTTTTTCTCTCTTCATAAAATTCAAATTTTTCATGTCAGTCAAAATAGTGAAAGTCTCGATATTTTTTTTTATCGGGAGTGGATTATAGGGATTTGACCTGATGATCATTTGGGGATGAATCACATATCATACCAATTTCCAAGCTGCTTTTCCACGAATGTCTCCTTTTTTGTAGACTTGTTTCCAAAGAATTGAGCCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 232 143 125</canonical_bands>
                <polymorphic_bands>625 232 143</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>247 214 188 118 83 71 61 18</canonical_bands>
                <polymorphic_bands>265 214 188 118 83 71 61</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>249 247 214 118 83 71 18</canonical_bands>
                <polymorphic_bands>265 249 214 118 83 71</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCCATCAATCTTTCCAATATAC</pcr_primer_p1>
		<pcr_primer_p2>TGTGATAACTGGAACAAGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACCCATCAATCTTTCCAATATACAAATAGTCATTATCTACAGCTGTTCGTGGAACAAATCTCACACAGGTCTTGTCGTGATATGCCTGTGAAAATGTAGAAACATTTTTAGTTTCAGTTATTCCAGGTTAAAGTTTGTCTCACCTGAAAACTTCTTGCCAAAACTGCTCTTTCTCTATCATTATACTGATTCGATATCACGTATGGAATCCTGCCGTTCGGCCATTTTCTTGTTCCAGTTATCACA</canonical_amplicon>
		<polymorphic_amplicon>ACCCATCAATCTTTCCAATATACAAATAGTCATTATCTACAGCTGTTCGTGGAACAAATCTCACACAGGTCTTGTCGTGATATGCCTGTGAAAATGTAGAAACATTTTTAGTTTCAGTTATTCCAGGTTAAAGTTTGTCTCACCTGAAAACTTCTTGCCAAAACTGCTCTTTCTCTATCATTATACTGATTYGATATCACGTATGGAATCCTGCCGTTCGGCCATTTTCTTGTTCCAGTTATCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10921</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>221438</contig_pos>
        <strand>+</strand>
        <context>AAGTACCTAA[A/T]TTTGGAATGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGCGTGCGGTTCGTATACGGCAAAAATTATCATAAACAAAAAGTACCTAA</left_flank>
        <right_flank>TTTGGAATGTGTTCTATACCGTAAAACCTGTAATATAAGGGTCTCCGCAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCTGTTAGGAATGTTTCACTGGAAGTGGATTGAGGCAAGAGATCTTCTGAAATTGTCAGACTGTAGATAAAAAGTTCAGGAAATGAAGTAATAGCCAAATTGGACCCGAAATCGAAGTCACAGGTAAAATGCGAACGGATCCGTTACGAACGCTCAGCGCTCGCGCGCGGTTGCAATAGGAACCGCATACGGACCGCACGCGACCCATTTTCAGAAAACCACAGCACATTATTCCGTATTCCTCCGTATTCTGTCCGTTCGCGAACTCCGTATCCGATCCGCTTGCGAATGATGGACAAACGGATCCGTTCGCGAATCAAACAACAGTTTAAGTTCGCGAACGGATCCGTTTGTTTATCATTCGCAATTGGATCGGATACGGAGTTCGCAAACTGATAGAATACGGAGAAGTACGAAATAATGTACTGTGGTTTTCTGAAAACGGGTCGCGTGCGGTTCGTATACGGCAAAAATTATCATAAACAAAAAGTACCTAAATTTGGAATGTGTTCTATACCGTAAAACCTGTAATATAAGGGTCTCCGCACTGTCAAGTTTAAGCACAATTATCTCAATTCTAATGTAAGATATCAAAAAGTGGTCAACTGGCAAAATGTTTCTGATATTATGATAAACAATTTACCAGTTGATAACTTGTTTCTATTTCTTACAGAAACCGAGAAAAATTGAAACTTAGAAGGTACTTCTATTACTGGTTTTATGATTTTCCAAATCTGAAAATTTTCAAGAATGCAAAACTAAAACCGAGCTGCATTTTTGTATTTTTATGTTGTTTGAAGAAGTTGGGTTTTGTTGAAAACATACTTTCGGCATGGATAGAAGCATATGATAGTGATAATATTAGAAAACTTGATAAGTAGTAGTTCAGCAGTTCATTTCTGCGCATCTCTCGTTTTCACTGGCGCTACTTTTTGCATTCCGATTGTTATGGTCTGAAAAATATGTAATATTTAGCTTTAAACTTGGTTTGTGGGTGA</canonical>
            <polymorphic>CATCTGTTAGGAATGTTTCACTGGAAGTGGATTGAGGCAAGAGATCTTCTGAAATTGTCAGACTGTAGATAAAAAGTTCAGGAAATGAAGTAATAGCCAAATTGGACCCGAAATCGAAGTCACAGGTAAAATGCGAACGGATCCGTTACGAACGCTCAGCGCTCGCGCGCGGTTGCAATAGGAACCGCATACGGACCGCACGCGACCCATTTTCAGAAAACCACAGCACATTATTCCGTATTCCTCCGTATTCTGTCCGTTCGCGAACTCCGTATCCGATCCGCTTGCGAATGATGGACAAACGGATCCGTTCGCGAATCAAACAACAGTTTAAGTTCGCGAACGGATCCGTTTGTTTATCATTCGCAATTGGATCGGATACGGAGTTCGCAAACTGATAGAATACGGAGAAGTACGAAATAATGTACTGTGGTTTTCTGAAAACGGGTCGCGTGCGGTTCGTATACGGCAAAAATTATCATAAACAAAAAGTACCTAAWTTTGGAATGTGTTCTATACCGTAAAACCTGTAATATAAGGGTCTCCGCACTGTCAAGTTTAAGCACAATTATCTCAATTCTAATGTAAGATATCAAAAAGTGGTCAACTGGCAAAATGTTTCTGATATTATGATAAACAATTTACCAGTTGATAACTTGTTTCTATTTCTTACAGAAACCGAGAAAAATTGAAACTTAGAAGGTACTTCTATTACTGGTTTTATGATTTTCCAAATCTGAAAATTTTCAAGAATGCAAAACTAAAACCGAGCTGCATTTTTGTATTTTTATGTTGTTTGAAGAAGTTGGGTTTTGTTGAAAACATACTTTCGGCATGGATAGAAGCATATGATAGTGATAATATTAGAAAACTTGATAAGTAGTAGTTCAGCAGTTCATTTCTGCGCATCTCTCGTTTTCACTGGCGCTACTTTTTGCATTCCGATTGTTATGGTCTGAAAAATATGTAATATTTAGCTTTAAACTTGGTTTGTGGGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>498 259 243</canonical_bands>
                <polymorphic_bands>741 259</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>268 259 106 68 63 55 52 48 47 25 9</canonical_bands>
                <polymorphic_bands>268 259 106 93 63 55 52 48 47 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATAATGTACTGTGGTTTTCTGA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTAGTTTTGCATTCTTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>350</pcr_amplicon_size>
		<canonical_amplicon>AAATAATGTACTGTGGTTTTCTGAAAACGGGTCGCGTGCGGTTCGTATACGGCAAAAATTATCATAAACAAAAAGTACCTAAATTTGGAATGTGTTCTATACCGTAAAACCTGTAATATAAGGGTCTCCGCACTGTCAAGTTTAAGCACAATTATCTCAATTCTAATGTAAGATATCAAAAAGTGGTCAACTGGCAAAATGTTTCTGATATTATGATAAACAATTTACCAGTTGATAACTTGTTTCTATTTCTTACAGAAACCGAGAAAAATTGAAACTTAGAAGGTACTTCTATTACTGGTTTTATGATTTTCCAAATCTGAAAATTTTCAAGAATGCAAAACTAAAAC</canonical_amplicon>
		<polymorphic_amplicon>AAATAATGTACTGTGGTTTTCTGAAAACGGGTCGCGTGCGGTTCGTATACGGCAAAAATTATCATAAACAAAAAGTACCTAAWTTTGGAATGTGTTCTATACCGTAAAACCTGTAATATAAGGGTCTCCGCACTGTCAAGTTTAAGCACAATTATCTCAATTCTAATGTAAGATATCAAAAAGTGGTCAACTGGCAAAATGTTTCTGATATTATGATAAACAATTTACCAGTTGATAACTTGTTTCTATTTCTTACAGAAACCGAGAAAAATTGAAACTTAGAAGGTACTTCTATTACTGGTTTTATGATTTTCCAAATCTGAAAATTTTCAAGAATGCAAAACTAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10922</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>221733</contig_pos>
        <strand>+</strand>
        <context>TTTTTATGTT[G/T]TTTGAAGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCAAGAATGCAAAACTAAAACCGAGCTGCATTTTTGTATTTTTATGTT</left_flank>
        <right_flank>TTTGAAGAAGTTGGGTTTTGTTGAAAACATACTTTCGGCATGGATAGAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGACAAACGGATCCGTTCGCGAATCAAACAACAGTTTAAGTTCGCGAACGGATCCGTTTGTTTATCATTCGCAATTGGATCGGATACGGAGTTCGCAAACTGATAGAATACGGAGAAGTACGAAATAATGTACTGTGGTTTTCTGAAAACGGGTCGCGTGCGGTTCGTATACGGCAAAAATTATCATAAACAAAAAGTACCTAAATTTGGAATGTGTTCTATACCGTAAAACCTGTAATATAAGGGTCTCCGCACTGTCAAGTTTAAGCACAATTATCTCAATTCTAATGTAAGATATCAAAAAGTGGTCAACTGGCAAAATGTTTCTGATATTATGATAAACAATTTACCAGTTGATAACTTGTTTCTATTTCTTACAGAAACCGAGAAAAATTGAAACTTAGAAGGTACTTCTATTACTGGTTTTATGATTTTCCAAATCTGAAAATTTTCAAGAATGCAAAACTAAAACCGAGCTGCATTTTTGTATTTTTATGTTGTTTGAAGAAGTTGGGTTTTGTTGAAAACATACTTTCGGCATGGATAGAAGCATATGATAGTGATAATATTAGAAAACTTGATAAGTAGTAGTTCAGCAGTTCATTTCTGCGCATCTCTCGTTTTCACTGGCGCTACTTTTTGCATTCCGATTGTTATGGTCTGAAAAATATGTAATATTTAGCTTTAAACTTGGTTTGTGGGTGAAATTTTCCACATTTGTTGTTTTTCATCATAATCTCTCATAGTGAGAAAAAGTTACCGTAAACACTTTAATAGAGGGTCCATCTTAACTTTCGTCTTGGTGCTCATACATCTCGGTTCCTGTGAAAGATATCAAAATTTGGTTAACTGATGAATTATTTACCATAATATCACCAACATTTTGCCAGTTTACCTCTTTTTTATATCTTTTACAGAAAACGAGCGATATGAGCTGAAAGTTGACGGCTTGGAGGCATTGTATTAGTGTTTACGGTAACAGTACTCGGTACACTGGCGC</canonical>
            <polymorphic>GGACAAACGGATCCGTTCGCGAATCAAACAACAGTTTAAGTTCGCGAACGGATCCGTTTGTTTATCATTCGCAATTGGATCGGATACGGAGTTCGCAAACTGATAGAATACGGAGAAGTACGAAATAATGTACTGTGGTTTTCTGAAAACGGGTCGCGTGCGGTTCGTATACGGCAAAAATTATCATAAACAAAAAGTACCTAAATTTGGAATGTGTTCTATACCGTAAAACCTGTAATATAAGGGTCTCCGCACTGTCAAGTTTAAGCACAATTATCTCAATTCTAATGTAAGATATCAAAAAGTGGTCAACTGGCAAAATGTTTCTGATATTATGATAAACAATTTACCAGTTGATAACTTGTTTCTATTTCTTACAGAAACCGAGAAAAATTGAAACTTAGAAGGTACTTCTATTACTGGTTTTATGATTTTCCAAATCTGAAAATTTTCAAGAATGCAAAACTAAAACCGAGCTGCATTTTTGTATTTTTATGTTKTTTGAAGAAGTTGGGTTTTGTTGAAAACATACTTTCGGCATGGATAGAAGCATATGATAGTGATAATATTAGAAAACTTGATAAGTAGTAGTTCAGCAGTTCATTTCTGCGCATCTCTCGTTTTCACTGGCGCTACTTTTTGCATTCCGATTGTTATGGTCTGAAAAATATGTAATATTTAGCTTTAAACTTGGTTTGTGGGTGAAATTTTCCACATTTGTTGTTTTTCATCATAATCTCTCATAGTGAGAAAAAGTTACCGTAAACACTTTAATAGAGGGTCCATCTTAACTTTCGTCTTGGTGCTCATACATCTCGGTTCCTGTGAAAGATATCAAAATTTGGTTAACTGATGAATTATTTACCATAATATCACCAACATTTTGCCAGTTTACCTCTTTTTTATATCTTTTACAGAAAACGAGCGATATGAGCTGAAAGTTGACGGCTTGGAGGCATTGTATTAGTGTTTACGGTAACAGTACTCGGTACACTGGCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCAAGAATGCAAAACTAAA</pcr_primer_p1>
		<pcr_primer_p2>CACAAACCAAGTTTAAAGCTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCAAGAATGCAAAACTAAAACCGAGCTGCATTTTTGTATTTTTATGTTGTTTGAAGAAGTTGGGTTTTGTTGAAAACATACTTTCGGCATGGATAGAAGCATATGATAGTGATAATATTAGAAAACTTGATAAGTAGTAGTTCAGCAGTTCATTTCTGCGCATCTCTCGTTTTCACTGGCGCTACTTTTTGCATTCCGATTGTTATGGTCTGAAAAATATGTAATATTTAGCTTTAAACTTGGTTTGTG</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCAAGAATGCAAAACTAAAACCGAGCTGCATTTTTGTATTTTTATGTTKTTTGAAGAAGTTGGGTTTTGTTGAAAACATACTTTCGGCATGGATAGAAGCATATGATAGTGATAATATTAGAAAACTTGATAAGTAGTAGTTCAGCAGTTCATTTCTGCGCATCTCTCGTTTTCACTGGCGCTACTTTTTGCATTCCGATTGTTATGGTCTGAAAAATATGTAATATTTAGCTTTAAACTTGGTTTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10923</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>247627</contig_pos>
        <strand>+</strand>
        <context>AAGTTCCGAT[A/G]TTTTGATATG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGCATCTTGAAACTATGAGGATCTGATTTCAAGGGGAAAAGTTCCGAT</left_flank>
        <right_flank>TTTTGATATGCAAATGAAATGAAATCACGATTAATAAATCATTGAGATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAATATGTCTACAAAACTCGTCTGGTGCCCTTCAATCCGCAGGTTCTTATTAGTAAGTGTCACAGCGACAGAACACGGTAGAATTCCAAACTGCAAACCCGTAACTCGGAAATTTCAGCCATCCCACCAATGGTGAACAACGCCAAGCAGATCGCCCAAAATCCACATGACCAATACGCTGCACAGAACTGGCGTGGAACCAACGATCATTTGTTGAACAGTGTCAGAGCAGTCGGAGATGCTATTACCGGTTTACCAATAAACAACGGAAGACATTCCAGCTACCAAGAGAGCATTTCCAGAGCATCTCCATACAATCCAGTGAGTTTTTTTTTGAACTCGAGATGCTCAAAGATCAGATCTTTGACCTCATAATTTAGGCCTAGTAAATAGAAACTTTTCTTCTTCCTCGTTTTGTTTGCTCGCTTCCAAGTCGGCACAAGAATGTTCGCATCTTGAAACTATGAGGATCTGATTTCAAGGGGAAAAGTTCCGATGTTTTGATATGCAAATGAAATGAAATCACGATTAATAAATCATTGAGATCTCGATTGCATTAACTTCATTAGGGGATACCGTAAGCACTCCAGTAGAGTGCCACCAACCCGTCAACTTTGAGACAATTTATCTCATTTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACGAAACGTTTTTGATATTACGATAAACATTTTGATAGTTGACTACTTTTTGATATCTTTTACAGGAACCGAAATAAATTGGCTCAAAGTTCAAAGTTAGTGGTGTCGTTCTATTAGTGTTGACGGTAATCTTAAAAGCAGCAAACTAAATTGAAAATAGAAAAACAATATTTTCAGCCACCACCATCATCCCAAGTGATTCGCAGTGTCAACGCTTCTCCACCATCAGCACCAATCGTCCACAACAAAATGATCATCCGAGAGGATATTCCAGCTCCACCACGTCCACCACCACCAGTTGAACTCTCTCCACCACCACGACCACCACCACC</canonical>
            <polymorphic>ATGAATATGTCTACAAAACTCGTCTGGTGCCCTTCAATCCGCAGGTTCTTATTAGTAAGTGTCACAGCGACAGAACACGGTAGAATTCCAAACTGCAAACCCGTAACTCGGAAATTTCAGCCATCCCACCAATGGTGAACAACGCCAAGCAGATCGCCCAAAATCCACATGACCAATACGCTGCACAGAACTGGCGTGGAACCAACGATCATTTGTTGAACAGTGTCAGAGCAGTCGGAGATGCTATTACCGGTTTACCAATAAACAACGGAAGACATTCCAGCTACCAAGAGAGCATTTCCAGAGCATCTCCATACAATCCAGTGAGTTTTTTTTTGAACTCGAGATGCTCAAAGATCAGATCTTTGACCTCATAATTTAGGCCTAGTAAATAGAAACTTTTCTTCTTCCTCGTTTTGTTTGCTCGCTTCCAAGTCGGCACAAGAATGTTCGCATCTTGAAACTATGAGGATCTGATTTCAAGGGGAAAAGTTCCGATRTTTTGATATGCAAATGAAATGAAATCACGATTAATAAATCATTGAGATCTCGATTGCATTAACTTCATTAGGGGATACCGTAAGCACTCCAGTAGAGTGCCACCAACCCGTCAACTTTGAGACAATTTATCTCATTTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACGAAACGTTTTTGATATTACGATAAACATTTTGATAGTTGACTACTTTTTGATATCTTTTACAGGAACCGAAATAAATTGGCTCAAAGTTCAAAGTTAGTGGTGTCGTTCTATTAGTGTTGACGGTAATCTTAAAAGCAGCAAACTAAATTGAAAATAGAAAAACAATATTTTCAGCCACCACCATCATCCCAAGTGATTCGCAGTGTCAACGCTTCTCCACCATCAGCACCAATCGTCCACAACAAAATGATCATCCGAGAGGATATTCCAGCTCCACCACGTCCACCACCACCAGTTGAACTCTCTCCACCACCACGACCACCACCACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTCGAGATGCTCAAAGAT</pcr_primer_p1>
		<pcr_primer_p2>CCCTAATGAAGTTAATGCAATC</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>GAACTCGAGATGCTCAAAGATCAGATCTTTGACCTCATAATTTAGGCCTAGTAAATAGAAACTTTTCTTCTTCCTCGTTTTGTTTGCTCGCTTCCAAGTCGGCACAAGAATGTTCGCATCTTGAAACTATGAGGATCTGATTTCAAGGGGAAAAGTTCCGATGTTTTGATATGCAAATGAAATGAAATCACGATTAATAAATCATTGAGATCTCGATTGCATTAACTTCATTAGGG</canonical_amplicon>
		<polymorphic_amplicon>GAACTCGAGATGCTCAAAGATCAGATCTTTGACCTCATAATTTAGGCCTAGTAAATAGAAACTTTTCTTCTTCCTCGTTTTGTTTGCTCGCTTCCAAGTCGGCACAAGAATGTTCGCATCTTGAAACTATGAGGATCTGATTTCAAGGGGAAAAGTTCCGATRTTTTGATATGCAAATGAAATGAAATCACGATTAATAAATCATTGAGATCTCGATTGCATTAACTTCATTAGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10924</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>247527</contig_pos>
        <strand>+</strand>
        <context>AAATAGAAAC[G/T]TTTCTTCTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCAAAGATCAGATCTTTGACCTCATAATTTAGGCCTAGTAAATAGAAAC</left_flank>
        <right_flank>TTTCTTCTTCCTCGTTTTGTTTGCTCGCTTCCAAGTCGGCACAAGAATGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTCATAGGTGGATATGATGCCGATCAACCGGTATTCATCATCAGTTTCTGATCACTACGACTCATCAGACGAGTATGACAATTATAGTGAACAGAACTATGAATATGTCTACAAAACTCGTCTGGTGCCCTTCAATCCGCAGGTTCTTATTAGTAAGTGTCACAGCGACAGAACACGGTAGAATTCCAAACTGCAAACCCGTAACTCGGAAATTTCAGCCATCCCACCAATGGTGAACAACGCCAAGCAGATCGCCCAAAATCCACATGACCAATACGCTGCACAGAACTGGCGTGGAACCAACGATCATTTGTTGAACAGTGTCAGAGCAGTCGGAGATGCTATTACCGGTTTACCAATAAACAACGGAAGACATTCCAGCTACCAAGAGAGCATTTCCAGAGCATCTCCATACAATCCAGTGAGTTTTTTTTTGAACTCGAGATGCTCAAAGATCAGATCTTTGACCTCATAATTTAGGCCTAGTAAATAGAAACTTTTCTTCTTCCTCGTTTTGTTTGCTCGCTTCCAAGTCGGCACAAGAATGTTCGCATCTTGAAACTATGAGGATCTGATTTCAAGGGGAAAAGTTCCGATGTTTTGATATGCAAATGAAATGAAATCACGATTAATAAATCATTGAGATCTCGATTGCATTAACTTCATTAGGGGATACCGTAAGCACTCCAGTAGAGTGCCACCAACCCGTCAACTTTGAGACAATTTATCTCATTTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACGAAACGTTTTTGATATTACGATAAACATTTTGATAGTTGACTACTTTTTGATATCTTTTACAGGAACCGAAATAAATTGGCTCAAAGTTCAAAGTTAGTGGTGTCGTTCTATTAGTGTTGACGGTAATCTTAAAAGCAGCAAACTAAATTGAAAATAGAAAAACAATATTTTCAGCCACCACCATCATCCCAAGTGATTCGCAGTGTCAACGCTTCTCCACCATCAGCAC</canonical>
            <polymorphic>ATCTCATAGGTGGATATGATGCCGATCAACCGGTATTCATCATCAGTTTCTGATCACTACGACTCATCAGACGAGTATGACAATTATAGTGAACAGAACTATGAATATGTCTACAAAACTCGTCTGGTGCCCTTCAATCCGCAGGTTCTTATTAGTAAGTGTCACAGCGACAGAACACGGTAGAATTCCAAACTGCAAACCCGTAACTCGGAAATTTCAGCCATCCCACCAATGGTGAACAACGCCAAGCAGATCGCCCAAAATCCACATGACCAATACGCTGCACAGAACTGGCGTGGAACCAACGATCATTTGTTGAACAGTGTCAGAGCAGTCGGAGATGCTATTACCGGTTTACCAATAAACAACGGAAGACATTCCAGCTACCAAGAGAGCATTTCCAGAGCATCTCCATACAATCCAGTGAGTTTTTTTTTGAACTCGAGATGCTCAAAGATCAGATCTTTGACCTCATAATTTAGGCCTAGTAAATAGAAACKTTTCTTCTTCCTCGTTTTGTTTGCTCGCTTCCAAGTCGGCACAAGAATGTTCGCATCTTGAAACTATGAGGATCTGATTTCAAGGGGAAAAGTTCCGATGTTTTGATATGCAAATGAAATGAAATCACGATTAATAAATCATTGAGATCTCGATTGCATTAACTTCATTAGGGGATACCGTAAGCACTCCAGTAGAGTGCCACCAACCCGTCAACTTTGAGACAATTTATCTCATTTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACGAAACGTTTTTGATATTACGATAAACATTTTGATAGTTGACTACTTTTTGATATCTTTTACAGGAACCGAAATAAATTGGCTCAAAGTTCAAAGTTAGTGGTGTCGTTCTATTAGTGTTGACGGTAATCTTAAAAGCAGCAAACTAAATTGAAAATAGAAAAACAATATTTTCAGCCACCACCATCATCCCAAGTGATTCGCAGTGTCAACGCTTCTCCACCATCAGCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTCGGAGATGCTATTACC</pcr_primer_p1>
		<pcr_primer_p2>GAAATCAGATCCTCATAGTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGTCGGAGATGCTATTACCGGTTTACCAATAAACAACGGAAGACATTCCAGCTACCAAGAGAGCATTTCCAGAGCATCTCCATACAATCCAGTGAGTTTTTTTTTGAACTCGAGATGCTCAAAGATCAGATCTTTGACCTCATAATTTAGGCCTAGTAAATAGAAACTTTTCTTCTTCCTCGTTTTGTTTGCTCGCTTCCAAGTCGGCACAAGAATGTTCGCATCTTGAAACTATGAGGATCTGATTTC</canonical_amplicon>
		<polymorphic_amplicon>CAGTCGGAGATGCTATTACCGGTTTACCAATAAACAACGGAAGACATTCCAGCTACCAAGAGAGCATTTCCAGAGCATCTCCATACAATCCAGTGAGTTTTTTTTTGAACTCGAGATGCTCAAAGATCAGATCTTTGACCTCATAATTTAGGCCTAGTAAATAGAAACKTTTCTTCTTCCTCGTTTTGTTTGCTCGCTTCCAAGTCGGCACAAGAATGTTCGCATCTTGAAACTATGAGGATCTGATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10925</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>247488</contig_pos>
        <strand></strand>
        <context>TCAAAGATCA[G/A]ATCTTTGACC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCCATACAATCCAGTGAGTTTTTTTTTGAACTCGAGATGCTCAAAGATCA</left_flank>
        <right_flank>ATCTTTGACCTCATAATTTAGGCCTAGTAAATAGAAACTTTTCTTCTTCC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCGTTCTCTCTTCCTAAAAAATCTCAACTTCTAATATATCTCATAGGTGGATATGATGCCGATCAACCGGTATTCATCATCAGTTTCTGATCACTACGACTCATCAGACGAGTATGACAATTATAGTGAACAGAACTATGAATATGTCTACAAAACTCGTCTGGTGCCCTTCAATCCGCAGGTTCTTATTAGTAAGTGTCACAGCGACAGAACACGGTAGAATTCCAAACTGCAAACCCGTAACTCGGAAATTTCAGCCATCCCACCAATGGTGAACAACGCCAAGCAGATCGCCCAAAATCCACATGACCAATACGCTGCACAGAACTGGCGTGGAACCAACGATCATTTGTTGAACAGTGTCAGAGCAGTCGGAGATGCTATTACCGGTTTACCAATAAACAACGGAAGACATTCCAGCTACCAAGAGAGCATTTCCAGAGCATCTCCATACAATCCAGTGAGTTTTTTTTTGAACTCGAGATGCTCAAAGATCAGATCTTTGACCTCATAATTTAGGCCTAGTAAATAGAAACTTTTCTTCTTCCTCGTTTTGTTTGCTCGCTTCCAAGTCGGCACAAGAATGTTCGCATCTTGAAACTATGAGGATCTGATTTCAAGGGGAAAAGTTCCGATGTTTTGATATGCAAATGAAATGAAATCACGATTAATAAATCATTGAGATCTCGATTGCATTAACTTCATTAGGGGATACCGTAAGCACTCCAGTAGAGTGCCACCAACCCGTCAACTTTGAGACAATTTATCTCATTTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACGAAACGTTTTTGATATTACGATAAACATTTTGATAGTTGACTACTTTTTGATATCTTTTACAGGAACCGAAATAAATTGGCTCAAAGTTCAAAGTTAGTGGTGTCGTTCTATTAGTGTTGACGGTAATCTTAAAAGCAGCAAACTAAATTGAAAATAGAAAAACAATATTTTCAGCCACCACCATCATCCC</canonical>
            <polymorphic>AATCGTTCTCTCTTCCTAAAAAATCTCAACTTCTAATATATCTCATAGGTGGATATGATGCCGATCAACCGGTATTCATCATCAGTTTCTGATCACTACGACTCATCAGACGAGTATGACAATTATAGTGAACAGAACTATGAATATGTCTACAAAACTCGTCTGGTGCCCTTCAATCCGCAGGTTCTTATTAGTAAGTGTCACAGCGACAGAACACGGTAGAATTCCAAACTGCAAACCCGTAACTCGGAAATTTCAGCCATCCCACCAATGGTGAACAACGCCAAGCAGATCGCCCAAAATCCACATGACCAATACGCTGCACAGAACTGGCGTGGAACCAACGATCATTTGTTGAACAGTGTCAGAGCAGTCGGAGATGCTATTACCGGTTTACCAATAAACAACGGAAGACATTCCAGCTACCAAGAGAGCATTTCCAGAGCATCTCCATACAATCCAGTGAGTTTTTTTTTGAACTCGAGATGCTCAAAGATCARATCTTTGACCTCATAATTTAGGCCTAGTAAATAGAAACTTTTCTTCTTCCTCGTTTTGTTTGCTCGCTTCCAAGTCGGCACAAGAATGTTCGCATCTTGAAACTATGAGGATCTGATTTCAAGGGGAAAAGTTCCGATGTTTTGATATGCAAATGAAATGAAATCACGATTAATAAATCATTGAGATCTCGATTGCATTAACTTCATTAGGGGATACCGTAAGCACTCCAGTAGAGTGCCACCAACCCGTCAACTTTGAGACAATTTATCTCATTTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACGAAACGTTTTTGATATTACGATAAACATTTTGATAGTTGACTACTTTTTGATATCTTTTACAGGAACCGAAATAAATTGGCTCAAAGTTCAAAGTTAGTGGTGTCGTTCTATTAGTGTTGACGGTAATCTTAAAAGCAGCAAACTAAATTGAAAATAGAAAAACAATATTTTCAGCCACCACCATCATCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>316 200 149 110 75 62 55 28 5</canonical_bands>
                <polymorphic_bands>316 200 149 115 75 62 55 28</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>499 316 185</canonical_bands>
                <polymorphic_bands>684 316</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>499 316 110 75</canonical_bands>
                <polymorphic_bands>609 316 75</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>365 141 123 118 115 90 21 18 9</canonical_bands>
                <polymorphic_bands>365 238 141 118 90 21 18 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTCGGAGATGCTATTACC</pcr_primer_p1>
		<pcr_primer_p2>GAAATCAGATCCTCATAGTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGTCGGAGATGCTATTACCGGTTTACCAATAAACAACGGAAGACATTCCAGCTACCAAGAGAGCATTTCCAGAGCATCTCCATACAATCCAGTGAGTTTTTTTTTGAACTCGAGATGCTCAAAGATCAGATCTTTGACCTCATAATTTAGGCCTAGTAAATAGAAACTTTTCTTCTTCCTCGTTTTGTTTGCTCGCTTCCAAGTCGGCACAAGAATGTTCGCATCTTGAAACTATGAGGATCTGATTTC</canonical_amplicon>
		<polymorphic_amplicon>CAGTCGGAGATGCTATTACCGGTTTACCAATAAACAACGGAAGACATTCCAGCTACCAAGAGAGCATTTCCAGAGCATCTCCATACAATCCAGTGAGTTTTTTTTTGAACTCGAGATGCTCAAAGATCARATCTTTGACCTCATAATTTAGGCCTAGTAAATAGAAACTTTTCTTCTTCCTCGTTTTGTTTGCTCGCTTCCAAGTCGGCACAAGAATGTTCGCATCTTGAAACTATGAGGATCTGATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10926</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>247390</contig_pos>
        <strand>+</strand>
        <context>GTKTACCAAT[A/G]AACAACGGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGTTGAACAGTGTCAGAGCAGTCGGAGATGCTATTACCGGTTTACCAAT</left_flank>
        <right_flank>AACAACGGAAGACATTCCAGCTACCAAGAGAGCATTTCCAGAGCATCTCC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCTTTTTTCAAGGTTACCTGTTGAACCAAAAATCCTTTCTTTTTTTGATTTTTGAAATTCCGACTTTTTGATCTGGAACCGTAATTTTCTTTTCAATCGTTCTCTCTTCCTAAAAAATCTCAACTTCTAATATATCTCATAGGTGGATATGATGCCGATCAACCGGTATTCATCATCAGTTTCTGATCACTACGACTCATCAGACGAGTATGACAATTATAGTGAACAGAACTATGAATATGTCTACAAAACTCGTCTGGTGCCCTTCAATCCGCAGGTTCTTATTAGTAAGTGTCACAGCGACAGAACACGGTAGAATTCCAAACTGCAAACCCGTAACTCGGAAATTTCAGCCATCCCACCAATGGTGAACAACGCCAAGCAGATCGCCCAAAATCCACATGACCAATACGCTGCACAGAACTGGCGTGGAACCAACGATCATTTGTTGAACAGTGTCAGAGCAGTCGGAGATGCTATTACCGGTTTACCAATAAACAACGGAAGACATTCCAGCTACCAAGAGAGCATTTCCAGAGCATCTCCATACAATCCAGTGAGTTTTTTTTTGAACTCGAGATGCTCAAAGATCAGATCTTTGACCTCATAATTTAGGCCTAGTAAATAGAAACTTTTCTTCTTCCTCGTTTTGTTTGCTCGCTTCCAAGTCGGCACAAGAATGTTCGCATCTTGAAACTATGAGGATCTGATTTCAAGGGGAAAAGTTCCGATGTTTTGATATGCAAATGAAATGAAATCACGATTAATAAATCATTGAGATCTCGATTGCATTAACTTCATTAGGGGATACCGTAAGCACTCCAGTAGAGTGCCACCAACCCGTCAACTTTGAGACAATTTATCTCATTTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACGAAACGTTTTTGATATTACGATAAACATTTTGATAGTTGACTACTTTTTGATATCTTTTACAGGAACCGAAATAAATTGGCTCAAAGTTCAAA</canonical>
            <polymorphic>TTTTTCTTTTTTCAAGGTTACCTGTTGAACCAAAAATCCTTTCTTTTTTTGATTTTTGAAATTCCGACTTTTTGATCTGGAACCGTAATTTTCTTTTCAATCGTTCTCTCTTCCTAAAAAATCTCAACTTCTAATATATCTCATAGGTGGATATGATGCCGATCAACCGGTATTCATCATCAGTTTCTGATCACTACGACTCATCAGACGAGTATGACAATTATAGTGAACAGAACTATGAATATGTCTACAAAACTCGTCTGGTGCCCTTCAATCCGCAGGTTCTTATTAGTAAGTGTCACAGCGACAGAACACGGTAGAATTCCAAACTGCAAACCCGTAACTCGGAAATTTCAGCCATCCCACCAATGGTGAACAACGCCAAGCAGATCGCCCAAAATCCACATGACCAATACGCTGCACAGAACTGGCGTGGAACCAACGATCATTTGTTGAACAGTGTCAGAGCAGTCGGAGATGCTATTACCGGTTTACCAATRAACAACGGAAGACATTCCAGCTACCAAGAGAGCATTTCCAGAGCATCTCCATACAATCCAGTGAGTTTTTTTTTGAACTCGAGATGCTCAAAGATCAGATCTTTGACCTCATAATTTAGGCCTAGTAAATAGAAACTTTTCTTCTTCCTCGTTTTGTTTGCTCGCTTCCAAGTCGGCACAAGAATGTTCGCATCTTGAAACTATGAGGATCTGATTTCAAGGGGAAAAGTTCCGATGTTTTGATATGCAAATGAAATGAAATCACGATTAATAAATCATTGAGATCTCGATTGCATTAACTTCATTAGGGGATACCGTAAGCACTCCAGTAGAGTGCCACCAACCCGTCAACTTTGAGACAATTTATCTCATTTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACGAAACGTTTTTGATATTACGATAAACATTTTGATAGTTGACTACTTTTTGATATCTTTTACAGGAACCGAAATAAATTGGCTCAAAGTTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTGTTGAACAGTGTCAGAG</pcr_primer_p1>
		<pcr_primer_p2>AAGATGCGAACATTCTTGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTTGTTGAACAGTGTCAGAGCAGTCGGAGATGCTATTACCGGTTTACCAATAAACAACGGAAGACATTCCAGCTACCAAGAGAGCATTTCCAGAGCATCTCCATACAATCCAGTGAGTTTTTTTTTGAACTCGAGATGCTCAAAGATCAGATCTTTGACCTCATAATTTAGGCCTAGTAAATAGAAACTTTTCTTCTTCCTCGTTTTGTTTGCTCGCTTCCAAGTCGGCACAAGAATGTTCGCATCTT</canonical_amplicon>
		<polymorphic_amplicon>CATTTGTTGAACAGTGTCAGAGCAGTCGGAGATGCTATTACCGGTTTACCAATRAACAACGGAAGACATTCCAGCTACCAAGAGAGCATTTCCAGAGCATCTCCATACAATCCAGTGAGTTTTTTTTTGAACTCGAGATGCTCAAAGATCAGATCTTTGACCTCATAATTTAGGCCTAGTAAATAGAAACTTTTCTTCTTCCTCGTTTTGTTTGCTCGCTTCCAAGTCGGCACAAGAATGTTCGCATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10927</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>247382</contig_pos>
        <strand>+</strand>
        <context>TATTACCGGT[G/T]TACCAATRAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACGATCATTTGTTGAACAGTGTCAGAGCAGTCGGAGATGCTATTACCGGT</left_flank>
        <right_flank>TACCAATAAACAACGGAAGACATTCCAGCTACCAAGAGAGCATTTCCAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAGTTCTTTTTCTTTTTTCAAGGTTACCTGTTGAACCAAAAATCCTTTCTTTTTTTGATTTTTGAAATTCCGACTTTTTGATCTGGAACCGTAATTTTCTTTTCAATCGTTCTCTCTTCCTAAAAAATCTCAACTTCTAATATATCTCATAGGTGGATATGATGCCGATCAACCGGTATTCATCATCAGTTTCTGATCACTACGACTCATCAGACGAGTATGACAATTATAGTGAACAGAACTATGAATATGTCTACAAAACTCGTCTGGTGCCCTTCAATCCGCAGGTTCTTATTAGTAAGTGTCACAGCGACAGAACACGGTAGAATTCCAAACTGCAAACCCGTAACTCGGAAATTTCAGCCATCCCACCAATGGTGAACAACGCCAAGCAGATCGCCCAAAATCCACATGACCAATACGCTGCACAGAACTGGCGTGGAACCAACGATCATTTGTTGAACAGTGTCAGAGCAGTCGGAGATGCTATTACCGGTTTACCAATAAACAACGGAAGACATTCCAGCTACCAAGAGAGCATTTCCAGAGCATCTCCATACAATCCAGTGAGTTTTTTTTTGAACTCGAGATGCTCAAAGATCAGATCTTTGACCTCATAATTTAGGCCTAGTAAATAGAAACTTTTCTTCTTCCTCGTTTTGTTTGCTCGCTTCCAAGTCGGCACAAGAATGTTCGCATCTTGAAACTATGAGGATCTGATTTCAAGGGGAAAAGTTCCGATGTTTTGATATGCAAATGAAATGAAATCACGATTAATAAATCATTGAGATCTCGATTGCATTAACTTCATTAGGGGATACCGTAAGCACTCCAGTAGAGTGCCACCAACCCGTCAACTTTGAGACAATTTATCTCATTTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACGAAACGTTTTTGATATTACGATAAACATTTTGATAGTTGACTACTTTTTGATATCTTTTACAGGAACCGAAATAAATTGGCTCAA</canonical>
            <polymorphic>AACAGTTCTTTTTCTTTTTTCAAGGTTACCTGTTGAACCAAAAATCCTTTCTTTTTTTGATTTTTGAAATTCCGACTTTTTGATCTGGAACCGTAATTTTCTTTTCAATCGTTCTCTCTTCCTAAAAAATCTCAACTTCTAATATATCTCATAGGTGGATATGATGCCGATCAACCGGTATTCATCATCAGTTTCTGATCACTACGACTCATCAGACGAGTATGACAATTATAGTGAACAGAACTATGAATATGTCTACAAAACTCGTCTGGTGCCCTTCAATCCGCAGGTTCTTATTAGTAAGTGTCACAGCGACAGAACACGGTAGAATTCCAAACTGCAAACCCGTAACTCGGAAATTTCAGCCATCCCACCAATGGTGAACAACGCCAAGCAGATCGCCCAAAATCCACATGACCAATACGCTGCACAGAACTGGCGTGGAACCAACGATCATTTGTTGAACAGTGTCAGAGCAGTCGGAGATGCTATTACCGGTKTACCAATAAACAACGGAAGACATTCCAGCTACCAAGAGAGCATTTCCAGAGCATCTCCATACAATCCAGTGAGTTTTTTTTTGAACTCGAGATGCTCAAAGATCAGATCTTTGACCTCATAATTTAGGCCTAGTAAATAGAAACTTTTCTTCTTCCTCGTTTTGTTTGCTCGCTTCCAAGTCGGCACAAGAATGTTCGCATCTTGAAACTATGAGGATCTGATTTCAAGGGGAAAAGTTCCGATGTTTTGATATGCAAATGAAATGAAATCACGATTAATAAATCATTGAGATCTCGATTGCATTAACTTCATTAGGGGATACCGTAAGCACTCCAGTAGAGTGCCACCAACCCGTCAACTTTGAGACAATTTATCTCATTTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACGAAACGTTTTTGATATTACGATAAACATTTTGATAGTTGACTACTTTTTGATATCTTTTACAGGAACCGAAATAAATTGGCTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACACGGTAGAATTCCAAACT</pcr_primer_p1>
		<pcr_primer_p2>GTATGGAGATGCTCTGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AACACGGTAGAATTCCAAACTGCAAACCCGTAACTCGGAAATTTCAGCCATCCCACCAATGGTGAACAACGCCAAGCAGATCGCCCAAAATCCACATGACCAATACGCTGCACAGAACTGGCGTGGAACCAACGATCATTTGTTGAACAGTGTCAGAGCAGTCGGAGATGCTATTACCGGTTTACCAATAAACAACGGAAGACATTCCAGCTACCAAGAGAGCATTTCCAGAGCATCTCCATAC</canonical_amplicon>
		<polymorphic_amplicon>AACACGGTAGAATTCCAAACTGCAAACCCGTAACTCGGAAATTTCAGCCATCCCACCAATGGTGAACAACGCCAAGCAGATCGCCCAAAATCCACATGACCAATACGCTGCACAGAACTGGCGTGGAACCAACGATCATTTGTTGAACAGTGTCAGAGCAGTCGGAGATGCTATTACCGGTKTACCAATAAACAACGGAAGACATTCCAGCTACCAAGAGAGCATTTCCAGAGCATCTCCATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10928</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>247237</contig_pos>
        <strand>+</strand>
        <context>CCCGTAACTC[G/T]GAAATTTCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTCACAGCGACAGAACACGGTAGAATTCCAAACTGCAAACCCGTAACTC</left_flank>
        <right_flank>GAAATTTCAGCCATCCCACCAATGGTGAACAACGCCAAGCAGATCGCCCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCTCTCTCCCTCTTCCATCTTCATATATATTCTCTCCATTTTTTTTGAGCTCTCCCCGCTTTTTGTTTGTGTGCTCCTTGTAATTTTGACGATGGGGGACAAACGGGGAGACGGCTTTTGTGGGAGACGACCCCACGAGACACAACAGTTCTTTTTCTTTTTTCAAGGTTACCTGTTGAACCAAAAATCCTTTCTTTTTTTGATTTTTGAAATTCCGACTTTTTGATCTGGAACCGTAATTTTCTTTTCAATCGTTCTCTCTTCCTAAAAAATCTCAACTTCTAATATATCTCATAGGTGGATATGATGCCGATCAACCGGTATTCATCATCAGTTTCTGATCACTACGACTCATCAGACGAGTATGACAATTATAGTGAACAGAACTATGAATATGTCTACAAAACTCGTCTGGTGCCCTTCAATCCGCAGGTTCTTATTAGTAAGTGTCACAGCGACAGAACACGGTAGAATTCCAAACTGCAAACCCGTAACTCGGAAATTTCAGCCATCCCACCAATGGTGAACAACGCCAAGCAGATCGCCCAAAATCCACATGACCAATACGCTGCACAGAACTGGCGTGGAACCAACGATCATTTGTTGAACAGTGTCAGAGCAGTCGGAGATGCTATTACCGGTTTACCAATAAACAACGGAAGACATTCCAGCTACCAAGAGAGCATTTCCAGAGCATCTCCATACAATCCAGTGAGTTTTTTTTTGAACTCGAGATGCTCAAAGATCAGATCTTTGACCTCATAATTTAGGCCTAGTAAATAGAAACTTTTCTTCTTCCTCGTTTTGTTTGCTCGCTTCCAAGTCGGCACAAGAATGTTCGCATCTTGAAACTATGAGGATCTGATTTCAAGGGGAAAAGTTCCGATGTTTTGATATGCAAATGAAATGAAATCACGATTAATAAATCATTGAGATCTCGATTGCATTAACTTCATTAGGGGATACCGTAAGCACTCCAGTAGAGTGCCACCAACCCG</canonical>
            <polymorphic>TTGCTCTCTCCCTCTTCCATCTTCATATATATTCTCTCCATTTTTTTTGAGCTCTCCCCGCTTTTTGTTTGTGTGCTCCTTGTAATTTTGACGATGGGGGACAAACGGGGAGACGGCTTTTGTGGGAGACGACCCCACGAGACACAACAGTTCTTTTTCTTTTTTCAAGGTTACCTGTTGAACCAAAAATCCTTTCTTTTTTTGATTTTTGAAATTCCGACTTTTTGATCTGGAACCGTAATTTTCTTTTCAATCGTTCTCTCTTCCTAAAAAATCTCAACTTCTAATATATCTCATAGGTGGATATGATGCCGATCAACCGGTATTCATCATCAGTTTCTGATCACTACGACTCATCAGACGAGTATGACAATTATAGTGAACAGAACTATGAATATGTCTACAAAACTCGTCTGGTGCCCTTCAATCCGCAGGTTCTTATTAGTAAGTGTCACAGCGACAGAACACGGTAGAATTCCAAACTGCAAACCCGTAACTCKGAAATTTCAGCCATCCCACCAATGGTGAACAACGCCAAGCAGATCGCCCAAAATCCACATGACCAATACGCTGCACAGAACTGGCGTGGAACCAACGATCATTTGTTGAACAGTGTCAGAGCAGTCGGAGATGCTATTACCGGTTTACCAATAAACAACGGAAGACATTCCAGCTACCAAGAGAGCATTTCCAGAGCATCTCCATACAATCCAGTGAGTTTTTTTTTGAACTCGAGATGCTCAAAGATCAGATCTTTGACCTCATAATTTAGGCCTAGTAAATAGAAACTTTTCTTCTTCCTCGTTTTGTTTGCTCGCTTCCAAGTCGGCACAAGAATGTTCGCATCTTGAAACTATGAGGATCTGATTTCAAGGGGAAAAGTTCCGATGTTTTGATATGCAAATGAAATGAAATCACGATTAATAAATCATTGAGATCTCGATTGCATTAACTTCATTAGGGGATACCGTAAGCACTCCAGTAGAGTGCCACCAACCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>497 479 24</canonical_bands>
                <polymorphic_bands>521 479</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGCAGGTTCTTATTAGTAAGTGT</pcr_primer_p1>
		<pcr_primer_p2>TTGGTAGCTGGAATGTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CGCAGGTTCTTATTAGTAAGTGTCACAGCGACAGAACACGGTAGAATTCCAAACTGCAAACCCGTAACTCGGAAATTTCAGCCATCCCACCAATGGTGAACAACGCCAAGCAGATCGCCCAAAATCCACATGACCAATACGCTGCACAGAACTGGCGTGGAACCAACGATCATTTGTTGAACAGTGTCAGAGCAGTCGGAGATGCTATTACCGGTTTACCAATAAACAACGGAAGACATTCCAGCTACCAA</canonical_amplicon>
		<polymorphic_amplicon>CGCAGGTTCTTATTAGTAAGTGTCACAGCGACAGAACACGGTAGAATTCCAAACTGCAAACCCGTAACTCKGAAATTTCAGCCATCCCACCAATGGTGAACAACGCCAAGCAGATCGCCCAAAATCCACATGACCAATACGCTGCACAGAACTGGCGTGGAACCAACGATCATTTGTTGAACAGTGTCAGAGCAGTCGGAGATGCTATTACCGGTTTACCAATAAACAACGGAAGACATTCCAGCTACCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10940</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>288609</contig_pos>
        <strand>+</strand>
        <context>AATTCACATG[C/T]CTGTCTGGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGTTCTATTTACAGCTATACGAATTCTCAATGGGAGAACAATTCACATG</left_flank>
        <right_flank>CTGTCTGGACATTATTGTTCTTTTTTGTGATATCTGAACAGCAAGAAATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCATGGAAAATAGTAAGCTTCGAAAAAAGTCCTAGCAAGCAAACATCTTATTCTGACGAACAAGGCATTGTAGTATTACAGTATGACGAAAAAAACATTCAAATACTGACGGTTAGATTTATTTCAGAAAAATTCCAAAAAGTTTCGTTCTTCCCAAGCTTACAAGACCAAAAAGTACTGTTTTATGACACGAATTCAGCTAACCAGAGATATCCGGAATGGATCCGATTTAAATTTGGAATCCAAAATACGGAATCTGAAATACATAATCCAGACAAAAATACATTTCATGTAATTCAGAATCCGAATATCTCTGCAACGGACTTTTGAGTTCTCATTTGTAGCAGTTCACATTATAAAAAAGCTGATGTAACAGTTTTCATTAGGGCCAGTCCGTATTTATGTGAGTTCTTATTTGTAGCAGTTCTCATACATGACTGTTCTCGAAGTGTTCTATTTACAGCTATACGAATTCTCAATGGGAGAACAATTCACATGTCTGTCTGGACATTATTGTTCTTTTTTGTGATATCTGAACAGCAAGAAATGAATTCACCGTTTCCACCAAATTCTAAATTTGAAACCACGTCTTCTGGGTATGAGCCATCTTCAAGACAATGGAAGGATTAAGATTGACGGAGTAAATGATGTGATGAGTGAGTAAAACACGATAGTTTTGACACTACGTATTTGTTTTTTTTCTAGATGGTGATGAGTTTCAAAAAACGGAGTGTTGCAGATGTACAAAACATGTTCTCTATGACGTTTCAAAACTGTGTGCTAATGATGGATACTTTTGCTTGCGAATTTCGCTCATGATAAAATTATCGAAAAATATTTCACTGTATTCCAAAAAAAAACACAGTTCCGATTTAGGTTAAGAGCTATTTCTTCAGCTTTGAATTTTTCGCTGGTTATAAAAGTGTTGCTTTTTCAAAGGGAAATAAAAAAGTCAAATTTTTTAATCCTCTGGATTTGAGAATAATCATTATTCAAGAT</canonical>
            <polymorphic>ATCATGGAAAATAGTAAGCTTCGAAAAAAGTCCTAGCAAGCAAACATCTTATTCTGACGAACAAGGCATTGTAGTATTACAGTATGACGAAAAAAACATTCAAATACTGACGGTTAGATTTATTTCAGAAAAATTCCAAAAAGTTTCGTTCTTCCCAAGCTTACAAGACCAAAAAGTACTGTTTTATGACACGAATTCAGCTAACCAGAGATATCCGGAATGGATCCGATTTAAATTTGGAATCCAAAATACGGAATCTGAAATACATAATCCAGACAAAAATACATTTCATGTAATTCAGAATCCGAATATCTCTGCAACGGACTTTTGAGTTCTCATTTGTAGCAGTTCACATTATAAAAAAGCTGATGTAACAGTTTTCATTAGGGCCAGTCCGTATTTATGTGAGTTCTTATTTGTAGCAGTTCTCATACATGACTGTTCTCGAAGTGTTCTATTTACAGCTATACGAATTCTCAATGGGAGAACAATTCACATGYCTGTCTGGACATTATTGTTCTTTTTTGTGATATCTGAACAGCAAGAAATGAATTCACCGTTTCCACCAAATTCTAAATTTGAAACCACGTCTTCTGGGTATGAGCCATCTTCAAGACAATGGAAGGATTAAGATTGACGGAGTAAATGATGTGATGAGTGAGTAAAACACGATAGTTTTGACACTACGTATTTGTTTTTTTTCTAGATGGTGATGAGTTTCAAAAAACGGAGTGTTGCAGATGTACAAAACATGTTCTCTATGACGTTTCAAAACTGTGTGCTAATGATGGATACTTTTGCTTGCGAATTTCGCTCATGATAAAATTATCGAAAAATATTTCACTGTATTCCAAAAAAAAACACAGTTCCGATTTAGGTTAAGAGCTATTTCTTCAGCTTTGAATTTTTCGCTGGTTATAAAAGTGTTGCTTTTTCAAAGGGAAATAAAAAAGTCAAATTTTTTAATCCTCTGGATTTGAGAATAATCATTATTCAAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>495 255 250</canonical_bands>
                <polymorphic_bands>750 250</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>495 255 250</canonical_bands>
                <polymorphic_bands>750 250</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>499 255 246</canonical_bands>
                <polymorphic_bands>754 246</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGACTGTTCTCGAAGTGTTCTA</pcr_primer_p1>
		<pcr_primer_p2>TCAAAACTATCGTGTTTTACTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATGACTGTTCTCGAAGTGTTCTATTTACAGCTATACGAATTCTCAATGGGAGAACAATTCACATGTCTGTCTGGACATTATTGTTCTTTTTTGTGATATCTGAACAGCAAGAAATGAATTCACCGTTTCCACCAAATTCTAAATTTGAAACCACGTCTTCTGGGTATGAGCCATCTTCAAGACAATGGAAGGATTAAGATTGACGGAGTAAATGATGTGATGAGTGAGTAAAACACGATAGTTTTGA</canonical_amplicon>
		<polymorphic_amplicon>ATGACTGTTCTCGAAGTGTTCTATTTACAGCTATACGAATTCTCAATGGGAGAACAATTCACATGYCTGTCTGGACATTATTGTTCTTTTTTGTGATATCTGAACAGCAAGAAATGAATTCACCGTTTCCACCAAATTCTAAATTTGAAACCACGTCTTCTGGGTATGAGCCATCTTCAAGACAATGGAAGGATTAAGATTGACGGAGTAAATGATGTGATGAGTGAGTAAAACACGATAGTTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10982</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>288462</contig_pos>
        <strand>+</strand>
        <context>TAGCAGTTCA[C/T]ATTATAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCCGAATATCTCTGCAACGGACTTTTGAGTTCTCATTTGTAGCAGTTCA</left_flank>
        <right_flank>ATTATAAAAAAGCTGATGTAACAGTTTTCATTAGGGCCAGTCCGTATTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATTGACTGGAGATTTCTGGAAGTGTCTAGTTTCAGAAGTGAGAATAAAATATGAGTAATGAGATGATATTGAAAGTCAGATGGTATCGATATAAACGTTTCAAACTCTAATTCACATGACTTCACTTGGTTTGATGTATGGCTGTATCATGGAAAATAGTAAGCTTCGAAAAAAGTCCTAGCAAGCAAACATCTTATTCTGACGAACAAGGCATTGTAGTATTACAGTATGACGAAAAAAACATTCAAATACTGACGGTTAGATTTATTTCAGAAAAATTCCAAAAAGTTTCGTTCTTCCCAAGCTTACAAGACCAAAAAGTACTGTTTTATGACACGAATTCAGCTAACCAGAGATATCCGGAATGGATCCGATTTAAATTTGGAATCCAAAATACGGAATCTGAAATACATAATCCAGACAAAAATACATTTCATGTAATTCAGAATCCGAATATCTCTGCAACGGACTTTTGAGTTCTCATTTGTAGCAGTTCACATTATAAAAAAGCTGATGTAACAGTTTTCATTAGGGCCAGTCCGTATTTATGTGAGTTCTTATTTGTAGCAGTTCTCATACATGACTGTTCTCGAAGTGTTCTATTTACAGCTATACGAATTCTCAATGGGAGAACAATTCACATGTCTGTCTGGACATTATTGTTCTTTTTTGTGATATCTGAACAGCAAGAAATGAATTCACCGTTTCCACCAAATTCTAAATTTGAAACCACGTCTTCTGGGTATGAGCCATCTTCAAGACAATGGAAGGATTAAGATTGACGGAGTAAATGATGTGATGAGTGAGTAAAACACGATAGTTTTGACACTACGTATTTGTTTTTTTTCTAGATGGTGATGAGTTTCAAAAAACGGAGTGTTGCAGATGTACAAAACATGTTCTCTATGACGTTTCAAAACTGTGTGCTAATGATGGATACTTTTGCTTGCGAATTTCGCTCATGATAAAATTATCGAAAAATATTTCACTGTATTCCA</canonical>
            <polymorphic>CAATTGACTGGAGATTTCTGGAAGTGTCTAGTTTCAGAAGTGAGAATAAAATATGAGTAATGAGATGATATTGAAAGTCAGATGGTATCGATATAAACGTTTCAAACTCTAATTCACATGACTTCACTTGGTTTGATGTATGGCTGTATCATGGAAAATAGTAAGCTTCGAAAAAAGTCCTAGCAAGCAAACATCTTATTCTGACGAACAAGGCATTGTAGTATTACAGTATGACGAAAAAAACATTCAAATACTGACGGTTAGATTTATTTCAGAAAAATTCCAAAAAGTTTCGTTCTTCCCAAGCTTACAAGACCAAAAAGTACTGTTTTATGACACGAATTCAGCTAACCAGAGATATCCGGAATGGATCCGATTTAAATTTGGAATCCAAAATACGGAATCTGAAATACATAATCCAGACAAAAATACATTTCATGTAATTCAGAATCCGAATATCTCTGCAACGGACTTTTGAGTTCTCATTTGTAGCAGTTCAYATTATAAAAAAGCTGATGTAACAGTTTTCATTAGGGCCAGTCCGTATTTATGTGAGTTCTTATTTGTAGCAGTTCTCATACATGACTGTTCTCGAAGTGTTCTATTTACAGCTATACGAATTCTCAATGGGAGAACAATTCACATGTCTGTCTGGACATTATTGTTCTTTTTTGTGATATCTGAACAGCAAGAAATGAATTCACCGTTTCCACCAAATTCTAAATTTGAAACCACGTCTTCTGGGTATGAGCCATCTTCAAGACAATGGAAGGATTAAGATTGACGGAGTAAATGATGTGATGAGTGAGTAAAACACGATAGTTTTGACACTACGTATTTGTTTTTTTTCTAGATGGTGATGAGTTTCAAAAAACGGAGTGTTGCAGATGTACAAAACATGTTCTCTATGACGTTTCAAAACTGTGTGCTAATGATGGATACTTTTGCTTGCGAATTTCGCTCATGATAAAATTATCGAAAAATATTTCACTGTATTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>212 161 74 66 62 55 45 45 43 34 29 27 26 22 22 16 14 10 10 9 9 7 2</canonical_bands>
                <polymorphic_bands>216 212 74 66 62 45 45 43 34 29 27 26 22 22 16 14 10 10 9 9 7 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTATGACACGAATTCAGCTAAC</pcr_primer_p1>
		<pcr_primer_p2>TAGAACACTTCGAGAACAGTCAT</pcr_primer_p2>
		<pcr_amplicon_size>275</pcr_amplicon_size>
		<canonical_amplicon>TTTATGACACGAATTCAGCTAACCAGAGATATCCGGAATGGATCCGATTTAAATTTGGAATCCAAAATACGGAATCTGAAATACATAATCCAGACAAAAATACATTTCATGTAATTCAGAATCCGAATATCTCTGCAACGGACTTTTGAGTTCTCATTTGTAGCAGTTCACATTATAAAAAAGCTGATGTAACAGTTTTCATTAGGGCCAGTCCGTATTTATGTGAGTTCTTATTTGTAGCAGTTCTCATACATGACTGTTCTCGAAGTGTTCTA</canonical_amplicon>
		<polymorphic_amplicon>TTTATGACACGAATTCAGCTAACCAGAGATATCCGGAATGGATCCGATTTAAATTTGGAATCCAAAATACGGAATCTGAAATACATAATCCAGACAAAAATACATTTCATGTAATTCAGAATCCGAATATCTCTGCAACGGACTTTTGAGTTCTCATTTGTAGCAGTTCAYATTATAAAAAAGCTGATGTAACAGTTTTCATTAGGGCCAGTCCGTATTTATGTGAGTTCTTATTTGTAGCAGTTCTCATACATGACTGTTCTCGAAGTGTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10983</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>313775</contig_pos>
        <strand>+</strand>
        <context>AAAATGAAAG[A/T]TTGTAAAAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTCGTGAAGTCGTGTTACAGTCGTGATGCTGAAACCTGAAAAATGAAAG</left_flank>
        <right_flank>TTGTAAAAGTTAAGAATCTTTGTTTCCAAATACACTTTTTCTAATCAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTACGCTGTCCAGTTTGAGCTAAATTATCTCAATTCCTGTAAAAAATATCAAAAATGTGTCAACTGACAAAACGTTTTTGATATTATGACAAACATTTTATCAGTTGACAAGATTTTTATATGTTTGACAGGTACTGTGAAAAATTAGCTCAAAGATAATAAGTTAGAGAGCCCTTCTATTACAGGTTTTACGGTACTAAATTTTTCATGAAAACTTCCAGTTTTACTTGCTTTATTGAAAAAAAAGATTGAACTCAGTTTTACAGCATGATACAGAAGATGGTGATGAGTAATGCCAAAAATACATGGAAGCCGAGAATAATTTTGATGAATCCTTGAGTTAGAATAAATGGGATCGAATGCAGTTTTTGAAGTTTTTTCATTTTTACATTTGTGGAGTAATTACAGGAAATGATATAATACAAAGTCGTGATGCTGATAATACAAAGTCGTGAAGTCGTGTTACAGTCGTGATGCTGAAACCTGAAAAATGAAAGTTTGTAAAAGTTAAGAATCTTTGTTTCCAAATACACTTTTTCTAATCAGTTGCTTCTGGAGTTGGCGCCACAGCAGTGTGCATCTCACCCTCATTGACGTCTTCATCATTGACCACATCGAAATCATCTGAACCACTTCCAGATTCATCACTTTCCGATCCTTCACTTCCAGATTCTTCTTCTGATGTTTCGAGTTCTTTCAGTTCATCGAAAGATGCCACAGATTCTCCAGAGCAGTCGGATGAGTCTGAGGATTCCGAAGAATCGGAACAGTCCGAATCGTCGTCAGAGTCTTCAGAGTCAATGTCCAGTTCTTCATTTTTCATAAGTGAGAAATAACGTCTCCAGTACTCAATATCATCGGTTCTCAGCCCATCAGGCATGGACGGTTGTGGATTCCATTGGCGAAAATATTGTTGATATAGCTGCCAAATAGGAGTACCATCCTCCATGTTTTGGTCTGTTTTCTTCGACTTCTCTTCAGATGATACCAACTTCATC</canonical>
            <polymorphic>CCTTACGCTGTCCAGTTTGAGCTAAATTATCTCAATTCCTGTAAAAAATATCAAAAATGTGTCAACTGACAAAACGTTTTTGATATTATGACAAACATTTTATCAGTTGACAAGATTTTTATATGTTTGACAGGTACTGTGAAAAATTAGCTCAAAGATAATAAGTTAGAGAGCCCTTCTATTACAGGTTTTACGGTACTAAATTTTTCATGAAAACTTCCAGTTTTACTTGCTTTATTGAAAAAAAAGATTGAACTCAGTTTTACAGCATGATACAGAAGATGGTGATGAGTAATGCCAAAAATACATGGAAGCCGAGAATAATTTTGATGAATCCTTGAGTTAGAATAAATGGGATCGAATGCAGTTTTTGAAGTTTTTTCATTTTTACATTTGTGGAGTAATTACAGGAAATGATATAATACAAAGTCGTGATGCTGATAATACAAAGTCGTGAAGTCGTGTTACAGTCGTGATGCTGAAACCTGAAAAATGAAAGWTTGTAAAAGTTAAGAATCTTTGTTTCCAAATACACTTTTTCTAATCAGTTGCTTCTGGAGTTGGCGCCACAGCAGTGTGCATCTCACCCTCATTGACGTCTTCATCATTGACCACATCGAAATCATCTGAACCACTTCCAGATTCATCACTTTCCGATCCTTCACTTCCAGATTCTTCTTCTGATGTTTCGAGTTCTTTCAGTTCATCGAAAGATGCCACAGATTCTCCAGAGCAGTCGGATGAGTCTGAGGATTCCGAAGAATCGGAACAGTCCGAATCGTCGTCAGAGTCTTCAGAGTCAATGTCCAGTTCTTCATTTTTCATAAGTGAGAAATAACGTCTCCAGTACTCAATATCATCGGTTCTCAGCCCATCAGGCATGGACGGTTGTGGATTCCATTGGCGAAAATATTGTTGATATAGCTGCCAAATAGGAGTACCATCCTCCATGTTTTGGTCTGTTTTCTTCGACTTCTCTTCAGATGATACCAACTTCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTGATAATACAAAGTCGTGAAG</pcr_primer_p1>
		<pcr_primer_p2>AGAAGAAGAATCTGGAAGTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GCTGATAATACAAAGTCGTGAAGTCGTGTTACAGTCGTGATGCTGAAACCTGAAAAATGAAAGTTTGTAAAAGTTAAGAATCTTTGTTTCCAAATACACTTTTTCTAATCAGTTGCTTCTGGAGTTGGCGCCACAGCAGTGTGCATCTCACCCTCATTGACGTCTTCATCATTGACCACATCGAAATCATCTGAACCACTTCCAGATTCATCACTTTCCGATCCTTCACTTCCAGATTCTTCTTCT</canonical_amplicon>
		<polymorphic_amplicon>GCTGATAATACAAAGTCGTGAAGTCGTGTTACAGTCGTGATGCTGAAACCTGAAAAATGAAAGWTTGTAAAAGTTAAGAATCTTTGTTTCCAAATACACTTTTTCTAATCAGTTGCTTCTGGAGTTGGCGCCACAGCAGTGTGCATCTCACCCTCATTGACGTCTTCATCATTGACCACATCGAAATCATCTGAACCACTTCCAGATTCATCACTTTCCGATCCTTCACTTCCAGATTCTTCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10984</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>313909</contig_pos>
        <strand>+</strand>
        <context>CATCTGAACC[A/G]CTTCCAGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCACCCTCATTGACGTCTTCATCATTGACCACATCGAAATCATCTGAACC</left_flank>
        <right_flank>CTTCCAGATTCATCACTTTCCGATCCTTCACTTCCAGATTCTTCTTCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTGTGAAAAATTAGCTCAAAGATAATAAGTTAGAGAGCCCTTCTATTACAGGTTTTACGGTACTAAATTTTTCATGAAAACTTCCAGTTTTACTTGCTTTATTGAAAAAAAAGATTGAACTCAGTTTTACAGCATGATACAGAAGATGGTGATGAGTAATGCCAAAAATACATGGAAGCCGAGAATAATTTTGATGAATCCTTGAGTTAGAATAAATGGGATCGAATGCAGTTTTTGAAGTTTTTTCATTTTTACATTTGTGGAGTAATTACAGGAAATGATATAATACAAAGTCGTGATGCTGATAATACAAAGTCGTGAAGTCGTGTTACAGTCGTGATGCTGAAACCTGAAAAATGAAAGTTTGTAAAAGTTAAGAATCTTTGTTTCCAAATACACTTTTTCTAATCAGTTGCTTCTGGAGTTGGCGCCACAGCAGTGTGCATCTCACCCTCATTGACGTCTTCATCATTGACCACATCGAAATCATCTGAACCACTTCCAGATTCATCACTTTCCGATCCTTCACTTCCAGATTCTTCTTCTGATGTTTCGAGTTCTTTCAGTTCATCGAAAGATGCCACAGATTCTCCAGAGCAGTCGGATGAGTCTGAGGATTCCGAAGAATCGGAACAGTCCGAATCGTCGTCAGAGTCTTCAGAGTCAATGTCCAGTTCTTCATTTTTCATAAGTGAGAAATAACGTCTCCAGTACTCAATATCATCGGTTCTCAGCCCATCAGGCATGGACGGTTGTGGATTCCATTGGCGAAAATATTGTTGATATAGCTGCCAAATAGGAGTACCATCCTCCATGTTTTGGTCTGTTTTCTTCGACTTCTCTTCAGATGATACCAACTTCATCTCGTAGTCTTTTCCCTCAAATGGAGTGGCTTGTCCTTTTGGTGGATTGATGGTTATCTCTGGTACATGAGTATCTTGTGACCAAACGTTGGAGTATGGCCGTACATGAGTATCTTGTGGCCAAATGTTTGTGTA</canonical>
            <polymorphic>TACTGTGAAAAATTAGCTCAAAGATAATAAGTTAGAGAGCCCTTCTATTACAGGTTTTACGGTACTAAATTTTTCATGAAAACTTCCAGTTTTACTTGCTTTATTGAAAAAAAAGATTGAACTCAGTTTTACAGCATGATACAGAAGATGGTGATGAGTAATGCCAAAAATACATGGAAGCCGAGAATAATTTTGATGAATCCTTGAGTTAGAATAAATGGGATCGAATGCAGTTTTTGAAGTTTTTTCATTTTTACATTTGTGGAGTAATTACAGGAAATGATATAATACAAAGTCGTGATGCTGATAATACAAAGTCGTGAAGTCGTGTTACAGTCGTGATGCTGAAACCTGAAAAATGAAAGTTTGTAAAAGTTAAGAATCTTTGTTTCCAAATACACTTTTTCTAATCAGTTGCTTCTGGAGTTGGCGCCACAGCAGTGTGCATCTCACCCTCATTGACGTCTTCATCATTGACCACATCGAAATCATCTGAACCRCTTCCAGATTCATCACTTTCCGATCCTTCACTTCCAGATTCTTCTTCTGATGTTTCGAGTTCTTTCAGTTCATCGAAAGATGCCACAGATTCTCCAGAGCAGTCGGATGAGTCTGAGGATTCCGAAGAATCGGAACAGTCCGAATCGTCGTCAGAGTCTTCAGAGTCAATGTCCAGTTCTTCATTTTTCATAAGTGAGAAATAACGTCTCCAGTACTCAATATCATCGGTTCTCAGCCCATCAGGCATGGACGGTTGTGGATTCCATTGGCGAAAATATTGTTGATATAGCTGCCAAATAGGAGTACCATCCTCCATGTTTTGGTCTGTTTTCTTCGACTTCTCTTCAGATGATACCAACTTCATCTCGTAGTCTTTTCCCTCAAATGGAGTGGCTTGTCCTTTTGGTGGATTGATGGTTATCTCTGGTACATGAGTATCTTGTGACCAAACGTTGGAGTATGGCCGTACATGAGTATCTTGTGGCCAAATGTTTGTGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>146 134 111 111 63 59 55 39 36 36 35 28 22 20 16 15 15 14 11 8 8 7 7 2 2</canonical_bands>
                <polymorphic_bands>146 134 111 111 63 59 55 39 36 36 35 35 28 22 16 15 14 11 8 8 7 7 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAATACAAAGTCGTGAAGTCGT</pcr_primer_p1>
		<pcr_primer_p2>CTCGAAACATCAGAAGAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ATAATACAAAGTCGTGAAGTCGTGTTACAGTCGTGATGCTGAAACCTGAAAAATGAAAGTTTGTAAAAGTTAAGAATCTTTGTTTCCAAATACACTTTTTCTAATCAGTTGCTTCTGGAGTTGGCGCCACAGCAGTGTGCATCTCACCCTCATTGACGTCTTCATCATTGACCACATCGAAATCATCTGAACCACTTCCAGATTCATCACTTTCCGATCCTTCACTTCCAGATTCTTCTTCTGATGTTTCGAG</canonical_amplicon>
		<polymorphic_amplicon>ATAATACAAAGTCGTGAAGTCGTGTTACAGTCGTGATGCTGAAACCTGAAAAATGAAAGTTTGTAAAAGTTAAGAATCTTTGTTTCCAAATACACTTTTTCTAATCAGTTGCTTCTGGAGTTGGCGCCACAGCAGTGTGCATCTCACCCTCATTGACGTCTTCATCATTGACCACATCGAAATCATCTGAACCRCTTCCAGATTCATCACTTTCCGATCCTTCACTTCCAGATTCTTCTTCTGATGTTTCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10985</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>348108</contig_pos>
        <strand>+</strand>
        <context>ATTGAGTCCA[A/G]TGGTTATYAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAACGTAAAAAACAGAATCAATTGACACTAGAAGCACAAATTGAGTCCA</left_flank>
        <right_flank>TGGTTATGAACCAGCTGTAAAACTGTAAATGGACCATTCAGGAGATTACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGATAGGATTTCCGAAGCCGGGAAAATTTCGAAACTTGAAAAATTTTTATTTTCTTACCTTCCATTATGTTCCGTTGCACCTATGGTCCTGATTTGAATCGTGCCAATCCCAGCGCTGGAAACTGTCCTCGAAGTCCTCGAAATTGGTCATGACGTCCAAACATCCGCTGCAACTTGAAAGTTTTGAAACTTTACCAATTCCCGTTTTCTCACCTTTGCCTTTTCCGTTTTCTTGATTAAAATTCTGTACATCCTAAAAACCTAGAAGATTCTGCAAGATCCTGAAACTTGAACGTTGGAAACTCAATACTAATTTTCCCGTATTATTCTTAACCCTGGGCGTTGCCCTCATTTTGTTAGGCTTTCACGGAGGTCACATTATTTTTAAAGAAAAGAAGGAAATCACGTAAAAAATGGTATGACATAATTTTCTGAACATCATATGACTCAACGTAAAAAACAGAATCAATTGACACTAGAAGCACAAATTGAGTCCAGTGGTTATGAACCAGCTGTAAAACTGTAAATGGACCATTCAGGAGATTACTACTTCACTTTCACTAAAACCTCACACTTTTTACAACATCCTTGCTTTGTTATTTTGCTGACTAAAAGCTGCATCCTGGGAAAATATCTCACAAATGACACTGGTTTCCTTAAATACTATTTTTTTTTCTTCAAGAGAAAACGAGAACAATGTTCAAGAATCGACAGGTTTTTTCGAAAAATTCAATTGGCCTAAACGATCCCGATTGCTTCAAAATTTTTTCTTGAGAAATCGAAAAGATTTCGAGATCCGATAGTCTGTATAAAATCGAGCTTTTTGATCTGTGAGTTCAATTCTATTTTTCAATGGAACACACCAGGCTATTCTCTGATGGAGAACCGATTCGCTCTGAAATTAAGACCAGTGGGAGGAGTACTATAAATTTTGTAGTTTTTCTTATCATTTTTTGGATTTTCATATTTCTGATTGGATATTTAGTTGGGTCCAGAAC</canonical>
            <polymorphic>GAAGATAGGATTTCCGAAGCCGGGAAAATTTCGAAACTTGAAAAATTTTTATTTTCTTACCTTCCATTATGTTCCGTTGCACCTATGGTCCTGATTTGAATCGTGCCAATCCCAGCGCTGGAAACTGTCCTCGAAGTCCTCGAAATTGGTCATGACGTCCAAACATCCGCTGCAACTTGAAAGTTTTGAAACTTTACCAATTCCCGTTTTCTCACCTTTGCCTTTTCCGTTTTCTTGATTAAAATTCTGTACATCCTAAAAACCTAGAAGATTCTGCAAGATCCTGAAACTTGAACGTTGGAAACTCAATACTAATTTTCCCGTATTATTCTTAACCCTGGGCGTTGCCCTCATTTTGTTAGGCTTTCACGGAGGTCACATTATTTTTAAAGAAAAGAAGGAAATCACGTAAAAAATGGTATGACATAATTTTCTGAACATCATATGACTCAACGTAAAAAACAGAATCAATTGACACTAGAAGCACAAATTGAGTCCARTGGTTATGAACCAGCTGTAAAACTGTAAATGGACCATTCAGGAGATTACTACTTCACTTTCACTAAAACCTCACACTTTTTACAACATCCTTGCTTTGTTATTTTGCTGACTAAAAGCTGCATCCTGGGAAAATATCTCACAAATGACACTGGTTTCCTTAAATACTATTTTTTTTTCTTCAAGAGAAAACGAGAACAATGTTCAAGAATCGACAGGTTTTTTCGAAAAATTCAATTGGCCTAAACGATCCCGATTGCTTCAAAATTTTTTCTTGAGAAATCGAAAAGATTTCGAGATCCGATAGTCTGTATAAAATCGAGCTTTTTGATCTGTGAGTTCAATTCTATTTTTCAATGGAACACACCAGGCTATTCTCTGATGGAGAACCGATTCGCTCTGAAATTAAGACCAGTGGGAGGAGTACTATAAATTTTGTAGTTTTTCTTATCATTTTTTGGATTTTCATATTTCTGATTGGATATTTAGTTGGGTCCAGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>186 155 109 85 81 70 65 54 51 29 27 24 16 11 9 9 9 6 2 2</canonical_bands>
                <polymorphic_bands>186 155 109 85 81 70 70 65 51 29 27 24 11 9 9 9 6 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTGAACATCATATGACTCAA</pcr_primer_p1>
		<pcr_primer_p2>AGTATTTAAGGAAACCAGTGTCA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>TTTCTGAACATCATATGACTCAACGTAAAAAACAGAATCAATTGACACTAGAAGCACAAATTGAGTCCAGTGGTTATGAACCAGCTGTAAAACTGTAAATGGACCATTCAGGAGATTACTACTTCACTTTCACTAAAACCTCACACTTTTTACAACATCCTTGCTTTGTTATTTTGCTGACTAAAAGCTGCATCCTGGGAAAATATCTCACAAATGACACTGGTTTCCTTAAATACT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTGAACATCATATGACTCAACGTAAAAAACAGAATCAATTGACACTAGAAGCACAAATTGAGTCCARTGGTTATGAACCAGCTGTAAAACTGTAAATGGACCATTCAGGAGATTACTACTTCACTTTCACTAAAACCTCACACTTTTTACAACATCCTTGCTTTGTTATTTTGCTGACTAAAAGCTGCATCCTGGGAAAATATCTCACAAATGACACTGGTTTCCTTAAATACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10987</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>348949</contig_pos>
        <strand>+</strand>
        <context>GCATACAGCT[C/G]AAAATCCCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTAACTGCATTTCTTTATGAAGGATACATTGTAGTAACGCATACAGCT</left_flank>
        <right_flank>AAAATCCCAAAGGCGTAGGAAAAGGTGTTTACTGTTTTTACTACGATTGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCTATTTTTCAATGGAACACACCAGGCTATTCTCTGATGGAGAACCGATTCGCTCTGAAATTAAGACCAGTGGGAGGAGTACTATAAATTTTGTAGTTTTTCTTATCATTTTTTGGATTTTCATATTTCTGATTGGATATTTAGTTGGGTCCAGAACAGGTATATCATCTAACGTTTCAGTCATATCTATTAATTACAACTTCAGAGGAACCACTGAATGAAGTTACTGTAGTACACTATGATCCATATATAAATTATGACAAGTGAGTTGCAAAAACATAAATGCTGAAAACTATCCTTATTTCAGTTTTTCCTCTGTTCCCATTTGTCGTGTTGAGAGTTGGAACAACAAAACGACAAAAAGTTTCCCATTCTACGATCTTTATAGATACTTTGCTGATAAAAAAGTAACAGGATCTGAAGGATTATCCGATGGACAGCTTCGTCTTTTAACTGCATTTCTTTATGAAGGATACATTGTAGTAACGCATACAGCTGAAAATCCCAAAGGCGTAGGAAAAGGTGTTTACTGTTTTTACTACGATTGCAACCGAAATGAACTCCCTGGTACAAGATTTCAATCGTTTGTCTTTCCAATGACTGCAGTTCATTGTCCAAGACGAGAGGGAGCTCAATATGTTTCGTTGGGTTTCGAAAAGGAATTGTCACCCAAAGAAGAACCAATTCCTTTATTAAATCGAATGTTTGAATGTAAATTTTTAAAATTACAGATTTTGGAACACTGATGCTTTTCAGATCCACCACACGAGGTCGGAGTATGTGTTGGTCAAATTTATGGCGATGAGAAGAAATGGTTAGAGATCATTGAATACGTAGAGCATCATAAATTAATGGGTGCTAATATGTTTTATTTCACTATTCTGGAAATGGATGGGTACACTAAACGAACAATCGAAGATTATCAACGACTCGGACAAATTGAAGCAACATTTGTAAATATAGAATATGAAAAAATTAACTGGCTTTTTCATATGATT</canonical>
            <polymorphic>ATTCTATTTTTCAATGGAACACACCAGGCTATTCTCTGATGGAGAACCGATTCGCTCTGAAATTAAGACCAGTGGGAGGAGTACTATAAATTTTGTAGTTTTTCTTATCATTTTTTGGATTTTCATATTTCTGATTGGATATTTAGTTGGGTCCAGAACAGGTATATCATCTAACGTTTCAGTCATATCTATTAATTACAACTTCAGAGGAACCACTGAATGAAGTTACTGTAGTACACTATGATCCATATATAAATTATGACAAGTGAGTTGCAAAAACATAAATGCTGAAAACTATCCTTATTTCAGTTTTTCCTCTGTTCCCATTTGTCGTGTTGAGAGTTGGAACAACAAAACGACAAAAAGTTTCCCATTCTACGATCTTTATAGATACTTTGCTGATAAAAAAGTAACAGGATCTGAAGGATTATCCGATGGACAGCTTCGTCTTTTAACTGCATTTCTTTATGAAGGATACATTGTAGTAACGCATACAGCTSAAAATCCCAAAGGCGTAGGAAAAGGTGTTTACTGTTTTTACTACGATTGCAACCGAAATGAACTCCCTGGTACAAGATTTCAATCGTTTGTCTTTCCAATGACTGCAGTTCATTGTCCAAGACGAGAGGGAGCTCAATATGTTTCGTTGGGTTTCGAAAAGGAATTGTCACCCAAAGAAGAACCAATTCCTTTATTAAATCGAATGTTTGAATGTAAATTTTTAAAATTACAGATTTTGGAACACTGATGCTTTTCAGATCCACCACACGAGGTCGGAGTATGTGTTGGTCAAATTTATGGCGATGAGAAGAAATGGTTAGAGATCATTGAATACGTAGAGCATCATAAATTAATGGGTGCTAATATGTTTTATTTCACTATTCTGGAAATGGATGGGTACACTAAACGAACAATCGAAGATTATCAACGACTCGGACAAATTGAAGCAACATTTGTAAATATAGAATATGAAAAAATTAACTGGCTTTTTCATATGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTCTTTTAACTGCATTTCTTTA</pcr_primer_p1>
		<pcr_primer_p2>ATAAAGGAATTGGTTCTTCTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTCTTTTAACTGCATTTCTTTATGAAGGATACATTGTAGTAACGCATACAGCTGAAAATCCCAAAGGCGTAGGAAAAGGTGTTTACTGTTTTTACTACGATTGCAACCGAAATGAACTCCCTGGTACAAGATTTCAATCGTTTGTCTTTCCAATGACTGCAGTTCATTGTCCAAGACGAGAGGGAGCTCAATATGTTTCGTTGGGTTTCGAAAAGGAATTGTCACCCAAAGAAGAACCAATTCCTTTAT</canonical_amplicon>
		<polymorphic_amplicon>CGTCTTTTAACTGCATTTCTTTATGAAGGATACATTGTAGTAACGCATACAGCTSAAAATCCCAAAGGCGTAGGAAAAGGTGTTTACTGTTTTTACTACGATTGCAACCGAAATGAACTCCCTGGTACAAGATTTCAATCGTTTGTCTTTCCAATGACTGCAGTTCATTGTCCAAGACGAGAGGGAGCTCAATATGTTTCGTTGGGTTTCGAAAAGGAATTGTCACCCAAAGAAGAACCAATTCCTTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10988</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>357032</contig_pos>
        <strand></strand>
        <context>CTCAAATTTC[A/T]GATTTCTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACTCGTTTGAACATCGTTTGGACTTTTTTCAGATAAATTCTCAAATTTC</left_flank>
        <right_flank>GATTTCTGAATTCTTCATTTTTTTAGATTTCCATTTGCGGATGTTGTCTT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGCCCTAATCATAAAAATAGTCGTAAACTTTTATTACCCAAAATCGATATAACAAAAATTTCGGTACTTTACAAAATCTTTCACAGTCATCTACATACGTCTCATCTGGAAAATTGAAACATTTTATTGTACAAAGTGAAAGATAGAATGGGTAGTATTCATAAAGAAATCCTCTCACAGTCATCTCCAGAAAAGTAAAATTCTGAAGCTTACCAGTTGGAAAATTGAGAAAAAATTTCAAACTCAAAAATCCCGAAGGATCACTTTGGTATTCCCTGAAGTGGTTATCGAAACAAAATTCTGAAATGACTGGATCTCCAGGAACTAAAAAATCGAAATTCGAAAATTTTTTAAATCAGGAAAAATGACTTTGGAAGATCAAATGATCGGCCACATGTTCGAAGGGTTGTGATGACTTTTTTGAATCCAAACTCTGAAGTTATTTTTTAACTCGTTTGAACATCGTTTGGACTTTTTTCAGATAAATTCTCAAATTTCAGATTTCTGAATTCTTCATTTTTTTAGATTTCCATTTGCGGATGTTGTCTTAATAGTTCATATTCTAGAGTGTGAAGCTAATAATTTGATTACTGCATTTTCAAAAAGCATTTACTACAGTAATCCTTAACATCCTGAGACTCAACGCACGATTATATAATTCCGGGCCTTACTTTTTACTCATTAGACAATATGAATGGTAAGAATGTAAAACAGCATAATGAATGTTTGATCATTCAGGTTCTAACATCTCTGTTTTTCCTAAATATTTGAAATAGTCACCACTTTTTACGTTCTTGATGGTCAAGTCCGGTCTGGATTTGTGAAAAAAAAACATGCATTTGAAAACATTTGAAATATCCTCTTTCCTATATAAAATATTCAAACATTTCCAAATTCTCTGATATCTGGATCCCCCATCCCCTTGTCTTTCTTATCTTTTACTTCTCCCTATTCCTCTTGACCCTGTCTCACTCTCCTTTTCTCATACTATTTCTCTCA</canonical>
            <polymorphic>TAGCCCTAATCATAAAAATAGTCGTAAACTTTTATTACCCAAAATCGATATAACAAAAATTTCGGTACTTTACAAAATCTTTCACAGTCATCTACATACGTCTCATCTGGAAAATTGAAACATTTTATTGTACAAAGTGAAAGATAGAATGGGTAGTATTCATAAAGAAATCCTCTCACAGTCATCTCCAGAAAAGTAAAATTCTGAAGCTTACCAGTTGGAAAATTGAGAAAAAATTTCAAACTCAAAAATCCCGAAGGATCACTTTGGTATTCCCTGAAGTGGTTATCGAAACAAAATTCTGAAATGACTGGATCTCCAGGAACTAAAAAATCGAAATTCGAAAATTTTTTAAATCAGGAAAAATGACTTTGGAAGATCAAATGATCGGCCACATGTTCGAAGGGTTGTGATGACTTTTTTGAATCCAAACTCTGAAGTTATTTTTTAACTCGTTTGAACATCGTTTGGACTTTTTTCAGATAAATTCTCAAATTTCWGATTTCTGAATTCTTCATTTTTTTAGATTTCCATTTGCGGATGTTGTCTTAATAGTTCATATTCTAGAGTGTGAAGCTAATAATTTGATTACTGCATTTTCAAAAAGCATTTACTACAGTAATCCTTAACATCCTGAGACTCAACGCACGATTATATAATTCCGGGCCTTACTTTTTACTCATTAGACAATATGAATGGTAAGAATGTAAAACAGCATAATGAATGTTTGATCATTCAGGTTCTAACATCTCTGTTTTTCCTAAATATTTGAAATAGTCACCACTTTTTACGTTCTTGATGGTCAAGTCCGGTCTGGATTTGTGAAAAAAAAACATGCATTTGAAAACATTTGAAATATCCTCTTTCCTATATAAAATATTCAAACATTTCCAAATTCTCTGATATCTGGATCCCCCATCCCCTTGTCTTTCTTATCTTTTACTTCTCCCTATTCCTCTTGACCCTGTCTCACTCTCCTTTTCTCATACTATTTCTCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAATCCAAACTCTGAAGTTA</pcr_primer_p1>
		<pcr_primer_p2>TTATATAATCGTGCGTTGAGTCT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TTTGAATCCAAACTCTGAAGTTATTTTTTAACTCGTTTGAACATCGTTTGGACTTTTTTCAGATAAATTCTCAAATTTCAGATTTCTGAATTCTTCATTTTTTTAGATTTCCATTTGCGGATGTTGTCTTAATAGTTCATATTCTAGAGTGTGAAGCTAATAATTTGATTACTGCATTTTCAAAAAGCATTTACTACAGTAATCCTTAACATCCTGAGACTCAACGCACGATTATATAA</canonical_amplicon>
		<polymorphic_amplicon>TTTGAATCCAAACTCTGAAGTTATTTTTTAACTCGTTTGAACATCGTTTGGACTTTTTTCAGATAAATTCTCAAATTTCWGATTTCTGAATTCTTCATTTTTTTAGATTTCCATTTGCGGATGTTGTCTTAATAGTTCATATTCTAGAGTGTGAAGCTAATAATTTGATTACTGCATTTTCAAAAAGCATTTACTACAGTAATCCTTAACATCCTGAGACTCAACGCACGATTATATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10989</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>357198</contig_pos>
        <strand></strand>
        <context>ATAATTCCGG[G/A]CCTTACTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACAGTAATCCTTAACATCCTGAGACTCAACGCACGATTATATAATTCCGG</left_flank>
        <right_flank>CCTTACTTTTTACTCATTAGACAATATGAATGGTAAGAATGTAAAACAGC</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAATCCTCTCACAGTCATCTCCAGAAAAGTAAAATTCTGAAGCTTACCAGTTGGAAAATTGAGAAAAAATTTCAAACTCAAAAATCCCGAAGGATCACTTTGGTATTCCCTGAAGTGGTTATCGAAACAAAATTCTGAAATGACTGGATCTCCAGGAACTAAAAAATCGAAATTCGAAAATTTTTTAAATCAGGAAAAATGACTTTGGAAGATCAAATGATCGGCCACATGTTCGAAGGGTTGTGATGACTTTTTTGAATCCAAACTCTGAAGTTATTTTTTAACTCGTTTGAACATCGTTTGGACTTTTTTCAGATAAATTCTCAAATTTCAGATTTCTGAATTCTTCATTTTTTTAGATTTCCATTTGCGGATGTTGTCTTAATAGTTCATATTCTAGAGTGTGAAGCTAATAATTTGATTACTGCATTTTCAAAAAGCATTTACTACAGTAATCCTTAACATCCTGAGACTCAACGCACGATTATATAATTCCGGGCCTTACTTTTTACTCATTAGACAATATGAATGGTAAGAATGTAAAACAGCATAATGAATGTTTGATCATTCAGGTTCTAACATCTCTGTTTTTCCTAAATATTTGAAATAGTCACCACTTTTTACGTTCTTGATGGTCAAGTCCGGTCTGGATTTGTGAAAAAAAAACATGCATTTGAAAACATTTGAAATATCCTCTTTCCTATATAAAATATTCAAACATTTCCAAATTCTCTGATATCTGGATCCCCCATCCCCTTGTCTTTCTTATCTTTTACTTCTCCCTATTCCTCTTGACCCTGTCTCACTCTCCTTTTCTCATACTATTTCTCTCACTTTCCCAGGGACCATAATTTCCCCTGGAGGTGGAGCCTAATGATTAGCTAAGCCCCGCCCCTTACCTAACGTAGGAAATATTTTTGGATAGTTAGTCATTAATTCCTCATTTTCATCCGGTTCTCTCCCATTTCCTTTTTACTTTATTACAGTACTTTTCTACCG</canonical>
            <polymorphic>GAAATCCTCTCACAGTCATCTCCAGAAAAGTAAAATTCTGAAGCTTACCAGTTGGAAAATTGAGAAAAAATTTCAAACTCAAAAATCCCGAAGGATCACTTTGGTATTCCCTGAAGTGGTTATCGAAACAAAATTCTGAAATGACTGGATCTCCAGGAACTAAAAAATCGAAATTCGAAAATTTTTTAAATCAGGAAAAATGACTTTGGAAGATCAAATGATCGGCCACATGTTCGAAGGGTTGTGATGACTTTTTTGAATCCAAACTCTGAAGTTATTTTTTAACTCGTTTGAACATCGTTTGGACTTTTTTCAGATAAATTCTCAAATTTCAGATTTCTGAATTCTTCATTTTTTTAGATTTCCATTTGCGGATGTTGTCTTAATAGTTCATATTCTAGAGTGTGAAGCTAATAATTTGATTACTGCATTTTCAAAAAGCATTTACTACAGTAATCCTTAACATCCTGAGACTCAACGCACGATTATATAATTCCGGRCCTTACTTTTTACTCATTAGACAATATGAATGGTAAGAATGTAAAACAGCATAATGAATGTTTGATCATTCAGGTTCTAACATCTCTGTTTTTCCTAAATATTTGAAATAGTCACCACTTTTTACGTTCTTGATGGTCAAGTCCGGTCTGGATTTGTGAAAAAAAAACATGCATTTGAAAACATTTGAAATATCCTCTTTCCTATATAAAATATTCAAACATTTCCAAATTCTCTGATATCTGGATCCCCCATCCCCTTGTCTTTCTTATCTTTTACTTCTCCCTATTCCTCTTGACCCTGTCTCACTCTCCTTTTCTCATACTATTTCTCTCACTTTCCCAGGGACCATAATTTCCCCTGGAGGTGGAGCCTAATGATTAGCTAAGCCCCGCCCCTTACCTAACGTAGGAAATATTTTTGGATAGTTAGTCATTAATTCCTCATTTTCATCCGGTTCTCTCCCATTTCCTTTTTACTTTATTACAGTACTTTTCTACCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>344 343 154 141 18</canonical_bands>
                <polymorphic_bands>687 154 141 18</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 275 225</canonical_bands>
                <polymorphic_bands>775 225</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>370 185 182 113 90 43 12 5</canonical_bands>
                <polymorphic_bands>460 185 182 113 43 12 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCATTTACTACAGTAATCCTTAACA</pcr_primer_p1>
		<pcr_primer_p2>GGGAGAAGTAAAAGATAAGAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>345</pcr_amplicon_size>
		<canonical_amplicon>AGCATTTACTACAGTAATCCTTAACATCCTGAGACTCAACGCACGATTATATAATTCCGGGCCTTACTTTTTACTCATTAGACAATATGAATGGTAAGAATGTAAAACAGCATAATGAATGTTTGATCATTCAGGTTCTAACATCTCTGTTTTTCCTAAATATTTGAAATAGTCACCACTTTTTACGTTCTTGATGGTCAAGTCCGGTCTGGATTTGTGAAAAAAAAACATGCATTTGAAAACATTTGAAATATCCTCTTTCCTATATAAAATATTCAAACATTTCCAAATTCTCTGATATCTGGATCCCCCATCCCCTTGTCTTTCTTATCTTTTACTTCTCCC</canonical_amplicon>
		<polymorphic_amplicon>AGCATTTACTACAGTAATCCTTAACATCCTGAGACTCAACGCACGATTATATAATTCCGGRCCTTACTTTTTACTCATTAGACAATATGAATGGTAAGAATGTAAAACAGCATAATGAATGTTTGATCATTCAGGTTCTAACATCTCTGTTTTTCCTAAATATTTGAAATAGTCACCACTTTTTACGTTCTTGATGGTCAAGTCCGGTCTGGATTTGTGAAAAAAAAACATGCATTTGAAAACATTTGAAATATCCTCTTTCCTATATAAAATATTCAAACATTTCCAAATTCTCTGATATCTGGATCCCCCATCCCCTTGTCTTTCTTATCTTTTACTTCTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10990</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>469417</contig_pos>
        <strand>+</strand>
        <context>GAAGATTCTG[A/G]TTTCATTCCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCCACCCTCTTGTTTTTGCATACACTCTCGCTTCTCAATGAAGATTCTG</left_flank>
        <right_flank>TTTCATTCCGCGTGTTTGCTTGGTCATTCAGTTGAATCGTTCTCTCTGGA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTAATTTTAAAAATATAAGAATTAAATTGATTTCGGATTTTATTATTTTAGCTTGGTCCCTGAAGATCAAGCCTTTCCGGAGAGAATGTTCCTAATTTTCTCGTTCTGTTTCATTCTTTCAAAACATGGCCCACCTGTTCTTCCGATTTTTTCTTGTGCTTCGACATGGTATCACCTGAAAATAAACACAATTTGTTGAACGGTGATTCCTGAGAAGAATGTCAACTTCAAAAAGCTACAAGACAACATGGAGACATATTTCTCATTAAAAATGAGCAGGCTATGCTCATAATAACTAAATATGAAAGTGCAATCGATGGGACGTAGAGAGGGGAAGTCTTCTGAAAACAATACGTCTCCAAAGAGCGATAACACGAGAGATGTAAGCATTAAACGCGGAGACGCAGGCAATGGGGCGCGATGCATTGGAGTTCTCGGCCAGTGTCTGCCACCCTCTTGTTTTTGCATACACTCTCGCTTCTCAATGAAGATTCTGGTTTCATTCCGCGTGTTTGCTTGGTCATTCAGTTGAATCGTTCTCTCTGGATTTTTCGTTTTGTCACCTGCACTCTCTTTTTCACTTTGCTTATTGATTAGAAGTTCAGCTAAATCTCTTTTTCATTTTTTTCCCAGTTGTTTTCCAGAATCATGGATTTCTCAACAATGATGAATGCGGCGAATAAAAACGCGAAGAAAGCGTCGCGAGAAGTTGATCGAATACAAGAAGAGGTATCGATTTCAAATCAATATTTCGAAATGTAAAAAAAACAATCATTTGCAGGTGAACAGTGAGAAAAATGAAGCACGCCGTCAATTGGAAGCCGAGAAACGCGCGCGGCTGGAAATTCAACGGAGGAAACAGGAGAAAGAGCAGGAATTAGCCAGAAAGCGGAAGGAAAGAGAAGAAGAAGAGCGGCGTAAGGTGAGAATTTCGATTATTGTTTCCATGGAAATGGGGTGGTTGCTAAGCCAAAGTAGAGGATTATCTCTACTAGAT</canonical>
            <polymorphic>AAAGTAATTTTAAAAATATAAGAATTAAATTGATTTCGGATTTTATTATTTTAGCTTGGTCCCTGAAGATCAAGCCTTTCCGGAGAGAATGTTCCTAATTTTCTCGTTCTGTTTCATTCTTTCAAAACATGGCCCACCTGTTCTTCCGATTTTTTCTTGTGCTTCGACATGGTATCACCTGAAAATAAACACAATTTGTTGAACGGTGATTCCTGAGAAGAATGTCAACTTCAAAAAGCTACAAGACAACATGGAGACATATTTCTCATTAAAAATGAGCAGGCTATGCTCATAATAACTAAATATGAAAGTGCAATCGATGGGACGTAGAGAGGGGAAGTCTTCTGAAAACAATACGTCTCCAAAGAGCGATAACACGAGAGATGTAAGCATTAAACGCGGAGACGCAGGCAATGGGGCGCGATGCATTGGAGTTCTCGGCCAGTGTCTGCCACCCTCTTGTTTTTGCATACACTCTCGCTTCTCAATGAAGATTCTGRTTTCATTCCGCGTGTTTGCTTGGTCATTCAGTTGAATCGTTCTCTCTGGATTTTTCGTTTTGTCACCTGCACTCTCTTTTTCACTTTGCTTATTGATTAGAAGTTCAGCTAAATCTCTTTTTCATTTTTTTCCCAGTTGTTTTCCAGAATCATGGATTTCTCAACAATGATGAATGCGGCGAATAAAAACGCGAAGAAAGCGTCGCGAGAAGTTGATCGAATACAAGAAGAGGTATCGATTTCAAATCAATATTTCGAAATGTAAAAAAAACAATCATTTGCAGGTGAACAGTGAGAAAAATGAAGCACGCCGTCAATTGGAAGCCGAGAAACGCGCGCGGCTGGAAATTCAACGGAGGAAACAGGAGAAAGAGCAGGAATTAGCCAGAAAGCGGAAGGAAAGAGAAGAAGAAGAGCGGCGTAAGGTGAGAATTTCGATTATTGTTTCCATGGAAATGGGGTGGTTGCTAAGCCAAAGTAGAGGATTATCTCTACTAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACGAGAGATGTAAGCATTAAAC</pcr_primer_p1>
		<pcr_primer_p2>AGAGATTTAGCTGAACTTCTAATCA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CACGAGAGATGTAAGCATTAAACGCGGAGACGCAGGCAATGGGGCGCGATGCATTGGAGTTCTCGGCCAGTGTCTGCCACCCTCTTGTTTTTGCATACACTCTCGCTTCTCAATGAAGATTCTGGTTTCATTCCGCGTGTTTGCTTGGTCATTCAGTTGAATCGTTCTCTCTGGATTTTTCGTTTTGTCACCTGCACTCTCTTTTTCACTTTGCTTATTGATTAGAAGTTCAGCTAAATCTCT</canonical_amplicon>
		<polymorphic_amplicon>CACGAGAGATGTAAGCATTAAACGCGGAGACGCAGGCAATGGGGCGCGATGCATTGGAGTTCTCGGCCAGTGTCTGCCACCCTCTTGTTTTTGCATACACTCTCGCTTCTCAATGAAGATTCTGRTTTCATTCCGCGTGTTTGCTTGGTCATTCAGTTGAATCGTTCTCTCTGGATTTTTCGTTTTGTCACCTGCACTCTCTTTTTCACTTTGCTTATTGATTAGAAGTTCAGCTAAATCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10991</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>469267</contig_pos>
        <strand>+</strand>
        <context>GTCTTCTGAA[A/T]ACAATACGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAATATGAAAGTGCAATCGATGGGACGTAGAGAGGGGAAGTCTTCTGAA</left_flank>
        <right_flank>ACAATACGTCTCCAAAGAGCGATAACACGAGAGATGTAAGCATTAAACGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGTACTTCTCGGCAAGTTCTCCTCGGTGAACTGAAAATCGGAAGTGATCGAGTTGAGTAAGACGTTTGGGGCAGATGTGGAGGCACCAATAGTTGAAACATTTTCTATTCGAATCACTCGACTTCTCGGCAACTCATCCCAATCCTGAAAAGTAATTTTAAAAATATAAGAATTAAATTGATTTCGGATTTTATTATTTTAGCTTGGTCCCTGAAGATCAAGCCTTTCCGGAGAGAATGTTCCTAATTTTCTCGTTCTGTTTCATTCTTTCAAAACATGGCCCACCTGTTCTTCCGATTTTTTCTTGTGCTTCGACATGGTATCACCTGAAAATAAACACAATTTGTTGAACGGTGATTCCTGAGAAGAATGTCAACTTCAAAAAGCTACAAGACAACATGGAGACATATTTCTCATTAAAAATGAGCAGGCTATGCTCATAATAACTAAATATGAAAGTGCAATCGATGGGACGTAGAGAGGGGAAGTCTTCTGAAAACAATACGTCTCCAAAGAGCGATAACACGAGAGATGTAAGCATTAAACGCGGAGACGCAGGCAATGGGGCGCGATGCATTGGAGTTCTCGGCCAGTGTCTGCCACCCTCTTGTTTTTGCATACACTCTCGCTTCTCAATGAAGATTCTGGTTTCATTCCGCGTGTTTGCTTGGTCATTCAGTTGAATCGTTCTCTCTGGATTTTTCGTTTTGTCACCTGCACTCTCTTTTTCACTTTGCTTATTGATTAGAAGTTCAGCTAAATCTCTTTTTCATTTTTTTCCCAGTTGTTTTCCAGAATCATGGATTTCTCAACAATGATGAATGCGGCGAATAAAAACGCGAAGAAAGCGTCGCGAGAAGTTGATCGAATACAAGAAGAGGTATCGATTTCAAATCAATATTTCGAAATGTAAAAAAAACAATCATTTGCAGGTGAACAGTGAGAAAAATGAAGCACGCCGTCAATTGGAAGCCGAGAAACGCGCGCGGCTGGAAATT</canonical>
            <polymorphic>AATGTACTTCTCGGCAAGTTCTCCTCGGTGAACTGAAAATCGGAAGTGATCGAGTTGAGTAAGACGTTTGGGGCAGATGTGGAGGCACCAATAGTTGAAACATTTTCTATTCGAATCACTCGACTTCTCGGCAACTCATCCCAATCCTGAAAAGTAATTTTAAAAATATAAGAATTAAATTGATTTCGGATTTTATTATTTTAGCTTGGTCCCTGAAGATCAAGCCTTTCCGGAGAGAATGTTCCTAATTTTCTCGTTCTGTTTCATTCTTTCAAAACATGGCCCACCTGTTCTTCCGATTTTTTCTTGTGCTTCGACATGGTATCACCTGAAAATAAACACAATTTGTTGAACGGTGATTCCTGAGAAGAATGTCAACTTCAAAAAGCTACAAGACAACATGGAGACATATTTCTCATTAAAAATGAGCAGGCTATGCTCATAATAACTAAATATGAAAGTGCAATCGATGGGACGTAGAGAGGGGAAGTCTTCTGAAWACAATACGTCTCCAAAGAGCGATAACACGAGAGATGTAAGCATTAAACGCGGAGACGCAGGCAATGGGGCGCGATGCATTGGAGTTCTCGGCCAGTGTCTGCCACCCTCTTGTTTTTGCATACACTCTCGCTTCTCAATGAAGATTCTGGTTTCATTCCGCGTGTTTGCTTGGTCATTCAGTTGAATCGTTCTCTCTGGATTTTTCGTTTTGTCACCTGCACTCTCTTTTTCACTTTGCTTATTGATTAGAAGTTCAGCTAAATCTCTTTTTCATTTTTTTCCCAGTTGTTTTCCAGAATCATGGATTTCTCAACAATGATGAATGCGGCGAATAAAAACGCGAAGAAAGCGTCGCGAGAAGTTGATCGAATACAAGAAGAGGTATCGATTTCAAATCAATATTTCGAAATGTAAAAAAAACAATCATTTGCAGGTGAACAGTGAGAAAAATGAAGCACGCCGTCAATTGGAAGCCGAGAAACGCGCGCGGCTGGAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAAAAAGCTACAAGACAACAT</pcr_primer_p1>
		<pcr_primer_p2>GAGAGTGTATGCAAAAACAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCAAAAAGCTACAAGACAACATGGAGACATATTTCTCATTAAAAATGAGCAGGCTATGCTCATAATAACTAAATATGAAAGTGCAATCGATGGGACGTAGAGAGGGGAAGTCTTCTGAAAACAATACGTCTCCAAAGAGCGATAACACGAGAGATGTAAGCATTAAACGCGGAGACGCAGGCAATGGGGCGCGATGCATTGGAGTTCTCGGCCAGTGTCTGCCACCCTCTTGTTTTTGCATACACTCTC</canonical_amplicon>
		<polymorphic_amplicon>TTCAAAAAGCTACAAGACAACATGGAGACATATTTCTCATTAAAAATGAGCAGGCTATGCTCATAATAACTAAATATGAAAGTGCAATCGATGGGACGTAGAGAGGGGAAGTCTTCTGAAWACAATACGTCTCCAAAGAGCGATAACACGAGAGATGTAAGCATTAAACGCGGAGACGCAGGCAATGGGGCGCGATGCATTGGAGTTCTCGGCCAGTGTCTGCCACCCTCTTGTTTTTGCATACACTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10996</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>505788</contig_pos>
        <strand>+</strand>
        <context>CCTAATAATT[A/G]TTTTCAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTATAGTTTTAAAGTTTAACATTTCTAAAGTCTCGGTCCCTAATAATT</left_flank>
        <right_flank>TTTTCAAAAATATCCTTTTTTGATACTTGCAGTTTCAAAGCATGCACTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCACTCCATATTGTTGAACTTGGTCAAAGTCATATGACCTTCTGAAGAGAGAGAGAAATCTTACGTATTCTGGACTCTGATTCTCAATTCACCTCCGAGAGAAGGAGACTTTGAAATATCAAAATACAATGGGTGTGATGGTGCACTTTTCACCTGATTTTATATGTACATGTGAACAGAGATGGAAACAAAGAGTGCAAGCACACCATACATTCCCTCATCCCCAAATGTGTGAGAGAAACATATTTATTCTTCAAAAAACCAACATATTTGTAGTTTTGAATTGTAAAATGTGTATTCGTTTATTAAATTTAAAAACCAGAAGTCAAATTGTATTCTGGTAATTTGAGCCGATCTGACTGATGTATTCATGTTCAAATGTATAACTAGACTTTTTCAAACTAGAAAAGTATTGTCTAAACTAATTTTTCTTCGATTTAGTTGAACTAATTATAGTTTTAAAGTTTAACATTTCTAAAGTCTCGGTCCCTAATAATTGTTTTCAAAAATATCCTTTTTTGATACTTGCAGTTTCAAAGCATGCACTTCTAGGTAACCAGCTCAGCGCACGAGAATCTTTCTACTTCCACAGAATTTTTTATTTAGTTTTGCTTAGAAAATACGACTTTCATATTTCATGTTCCTCTAGAGAAATCAGTTGATAGAGTTGTAAACACGAAGATGTCTGGGAAATTTAAGTTCCTTTCATTTTCTATTTAAGTAGTCTGCCTCGTGATTTGAACTAGAACTAAACTAGTCTTAATATTTTTCTCACATGTCGCGAAAGTAGCCCAAAAAATCTGAAAAGAAAAATAAAAAATTGTGGTATTTTCAGATTTTTTTCCCTGTCTCAATAGAAAGACACTCTCGAGAACAATGGAAATAATGATAAAAGTTATGCACCAAAATATTTTGAATTTTCTGTATTTTCCTAAAATTATTACAATAAATTAAAAAAAAATCAAAATTTTCAAAAAACGTCGTTGTGAATTCAAAAAA</canonical>
            <polymorphic>TCCACTCCATATTGTTGAACTTGGTCAAAGTCATATGACCTTCTGAAGAGAGAGAGAAATCTTACGTATTCTGGACTCTGATTCTCAATTCACCTCCGAGAGAAGGAGACTTTGAAATATCAAAATACAATGGGTGTGATGGTGCACTTTTCACCTGATTTTATATGTACATGTGAACAGAGATGGAAACAAAGAGTGCAAGCACACCATACATTCCCTCATCCCCAAATGTGTGAGAGAAACATATTTATTCTTCAAAAAACCAACATATTTGTAGTTTTGAATTGTAAAATGTGTATTCGTTTATTAAATTTAAAAACCAGAAGTCAAATTGTATTCTGGTAATTTGAGCCGATCTGACTGATGTATTCATGTTCAAATGTATAACTAGACTTTTTCAAACTAGAAAAGTATTGTCTAAACTAATTTTTCTTCGATTTAGTTGAACTAATTATAGTTTTAAAGTTTAACATTTCTAAAGTCTCGGTCCCTAATAATTRTTTTCAAAAATATCCTTTTTTGATACTTGCAGTTTCAAAGCATGCACTTCTAGGTAACCAGCTCAGCGCACGAGAATCTTTCTACTTCCACAGAATTTTTTATTTAGTTTTGCTTAGAAAATACGACTTTCATATTTCATGTTCCTCTAGAGAAATCAGTTGATAGAGTTGTAAACACGAAGATGTCTGGGAAATTTAAGTTCCTTTCATTTTCTATTTAAGTAGTCTGCCTCGTGATTTGAACTAGAACTAAACTAGTCTTAATATTTTTCTCACATGTCGCGAAAGTAGCCCAAAAAATCTGAAAAGAAAAATAAAAAATTGTGGTATTTTCAGATTTTTTTCCCTGTCTCAATAGAAAGACACTCTCGAGAACAATGGAAATAATGATAAAAGTTATGCACCAAAATATTTTGAATTTTCTGTATTTTCCTAAAATTATTACAATAAATTAAAAAAAAATCAAAATTTTCAAAAAACGTCGTTGTGAATTCAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGACTGATGTATTCATGTTCAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTCTGTGGAAGTAGAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CTGACTGATGTATTCATGTTCAAATGTATAACTAGACTTTTTCAAACTAGAAAAGTATTGTCTAAACTAATTTTTCTTCGATTTAGTTGAACTAATTATAGTTTTAAAGTTTAACATTTCTAAAGTCTCGGTCCCTAATAATTGTTTTCAAAAATATCCTTTTTTGATACTTGCAGTTTCAAAGCATGCACTTCTAGGTAACCAGCTCAGCGCACGAGAATCTTTCTACTTCCACAGAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>CTGACTGATGTATTCATGTTCAAATGTATAACTAGACTTTTTCAAACTAGAAAAGTATTGTCTAAACTAATTTTTCTTCGATTTAGTTGAACTAATTATAGTTTTAAAGTTTAACATTTCTAAAGTCTCGGTCCCTAATAATTRTTTTCAAAAATATCCTTTTTTGATACTTGCAGTTTCAAAGCATGCACTTCTAGGTAACCAGCTCAGCGCACGAGAATCTTTCTACTTCCACAGAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10997</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>505900</contig_pos>
        <strand>+</strand>
        <context>ATTTAGTTTT[A/G]CWTAGAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCAGCGCACGAGAATCTTTCTACTTCCACAGAATTTTTTATTTAGTTTT</left_flank>
        <right_flank>CTTAGAAAATACGACTTTCATATTTCATGTTCCTCTAGAGAAATCAGTTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAATATCAAAATACAATGGGTGTGATGGTGCACTTTTCACCTGATTTTATATGTACATGTGAACAGAGATGGAAACAAAGAGTGCAAGCACACCATACATTCCCTCATCCCCAAATGTGTGAGAGAAACATATTTATTCTTCAAAAAACCAACATATTTGTAGTTTTGAATTGTAAAATGTGTATTCGTTTATTAAATTTAAAAACCAGAAGTCAAATTGTATTCTGGTAATTTGAGCCGATCTGACTGATGTATTCATGTTCAAATGTATAACTAGACTTTTTCAAACTAGAAAAGTATTGTCTAAACTAATTTTTCTTCGATTTAGTTGAACTAATTATAGTTTTAAAGTTTAACATTTCTAAAGTCTCGGTCCCTAATAATTGTTTTCAAAAATATCCTTTTTTGATACTTGCAGTTTCAAAGCATGCACTTCTAGGTAACCAGCTCAGCGCACGAGAATCTTTCTACTTCCACAGAATTTTTTATTTAGTTTTGCTTAGAAAATACGACTTTCATATTTCATGTTCCTCTAGAGAAATCAGTTGATAGAGTTGTAAACACGAAGATGTCTGGGAAATTTAAGTTCCTTTCATTTTCTATTTAAGTAGTCTGCCTCGTGATTTGAACTAGAACTAAACTAGTCTTAATATTTTTCTCACATGTCGCGAAAGTAGCCCAAAAAATCTGAAAAGAAAAATAAAAAATTGTGGTATTTTCAGATTTTTTTCCCTGTCTCAATAGAAAGACACTCTCGAGAACAATGGAAATAATGATAAAAGTTATGCACCAAAATATTTTGAATTTTCTGTATTTTCCTAAAATTATTACAATAAATTAAAAAAAAATCAAAATTTTCAAAAAACGTCGTTGTGAATTCAAAAAAAAGCAAAGAGGGACAAGGATTTGAATTCCGAGCAGTGAGAAATCTACGCCACGGCCGCGGACTGGCTTTTTTTCAAGGGGTTTTTTACGTTTTTTACTTGGCGGAGATGAAC</canonical>
            <polymorphic>TGAAATATCAAAATACAATGGGTGTGATGGTGCACTTTTCACCTGATTTTATATGTACATGTGAACAGAGATGGAAACAAAGAGTGCAAGCACACCATACATTCCCTCATCCCCAAATGTGTGAGAGAAACATATTTATTCTTCAAAAAACCAACATATTTGTAGTTTTGAATTGTAAAATGTGTATTCGTTTATTAAATTTAAAAACCAGAAGTCAAATTGTATTCTGGTAATTTGAGCCGATCTGACTGATGTATTCATGTTCAAATGTATAACTAGACTTTTTCAAACTAGAAAAGTATTGTCTAAACTAATTTTTCTTCGATTTAGTTGAACTAATTATAGTTTTAAAGTTTAACATTTCTAAAGTCTCGGTCCCTAATAATTGTTTTCAAAAATATCCTTTTTTGATACTTGCAGTTTCAAAGCATGCACTTCTAGGTAACCAGCTCAGCGCACGAGAATCTTTCTACTTCCACAGAATTTTTTATTTAGTTTTRCTTAGAAAATACGACTTTCATATTTCATGTTCCTCTAGAGAAATCAGTTGATAGAGTTGTAAACACGAAGATGTCTGGGAAATTTAAGTTCCTTTCATTTTCTATTTAAGTAGTCTGCCTCGTGATTTGAACTAGAACTAAACTAGTCTTAATATTTTTCTCACATGTCGCGAAAGTAGCCCAAAAAATCTGAAAAGAAAAATAAAAAATTGTGGTATTTTCAGATTTTTTTCCCTGTCTCAATAGAAAGACACTCTCGAGAACAATGGAAATAATGATAAAAGTTATGCACCAAAATATTTTGAATTTTCTGTATTTTCCTAAAATTATTACAATAAATTAAAAAAAAATCAAAATTTTCAAAAAACGTCGTTGTGAATTCAAAAAAAAGCAAAGAGGGACAAGGATTTGAATTCCGAGCAGTGAGAAATCTACGCCACGGCCGCGGACTGGCTTTTTTTCAAGGGGTTTTTTACGTTTTTTACTTGGCGGAGATGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAAAGTCTCGGTCCCTAATAAT</pcr_primer_p1>
		<pcr_primer_p2>ACTTAAATAGAAAATGAAAGGAACTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTAAAGTCTCGGTCCCTAATAATTGTTTTCAAAAATATCCTTTTTTGATACTTGCAGTTTCAAAGCATGCACTTCTAGGTAACCAGCTCAGCGCACGAGAATCTTTCTACTTCCACAGAATTTTTTATTTAGTTTTGCTTAGAAAATACGACTTTCATATTTCATGTTCCTCTAGAGAAATCAGTTGATAGAGTTGTAAACACGAAGATGTCTGGGAAATTTAAGTTCCTTTCATTTTCTATTTAAGT</canonical_amplicon>
		<polymorphic_amplicon>CTAAAGTCTCGGTCCCTAATAATTGTTTTCAAAAATATCCTTTTTTGATACTTGCAGTTTCAAAGCATGCACTTCTAGGTAACCAGCTCAGCGCACGAGAATCTTTCTACTTCCACAGAATTTTTTATTTAGTTTTRCTTAGAAAATACGACTTTCATATTTCATGTTCCTCTAGAGAAATCAGTTGATAGAGTTGTAAACACGAAGATGTCTGGGAAATTTAAGTTCCTTTCATTTTCTATTTAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10998</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>505902</contig_pos>
        <strand>+</strand>
        <context>TTAGTTTTRC[A/T]TAGAAAATAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGCGCACGAGAATCTTTCTACTTCCACAGAATTTTTTATTTAGTTTTGC</left_flank>
        <right_flank>TAGAAAATACGACTTTCATATTTCATGTTCCTCTAGAGAAATCAGTTGAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATATCAAAATACAATGGGTGTGATGGTGCACTTTTCACCTGATTTTATATGTACATGTGAACAGAGATGGAAACAAAGAGTGCAAGCACACCATACATTCCCTCATCCCCAAATGTGTGAGAGAAACATATTTATTCTTCAAAAAACCAACATATTTGTAGTTTTGAATTGTAAAATGTGTATTCGTTTATTAAATTTAAAAACCAGAAGTCAAATTGTATTCTGGTAATTTGAGCCGATCTGACTGATGTATTCATGTTCAAATGTATAACTAGACTTTTTCAAACTAGAAAAGTATTGTCTAAACTAATTTTTCTTCGATTTAGTTGAACTAATTATAGTTTTAAAGTTTAACATTTCTAAAGTCTCGGTCCCTAATAATTGTTTTCAAAAATATCCTTTTTTGATACTTGCAGTTTCAAAGCATGCACTTCTAGGTAACCAGCTCAGCGCACGAGAATCTTTCTACTTCCACAGAATTTTTTATTTAGTTTTGCTTAGAAAATACGACTTTCATATTTCATGTTCCTCTAGAGAAATCAGTTGATAGAGTTGTAAACACGAAGATGTCTGGGAAATTTAAGTTCCTTTCATTTTCTATTTAAGTAGTCTGCCTCGTGATTTGAACTAGAACTAAACTAGTCTTAATATTTTTCTCACATGTCGCGAAAGTAGCCCAAAAAATCTGAAAAGAAAAATAAAAAATTGTGGTATTTTCAGATTTTTTTCCCTGTCTCAATAGAAAGACACTCTCGAGAACAATGGAAATAATGATAAAAGTTATGCACCAAAATATTTTGAATTTTCTGTATTTTCCTAAAATTATTACAATAAATTAAAAAAAAATCAAAATTTTCAAAAAACGTCGTTGTGAATTCAAAAAAAAGCAAAGAGGGACAAGGATTTGAATTCCGAGCAGTGAGAAATCTACGCCACGGCCGCGGACTGGCTTTTTTTCAAGGGGTTTTTTACGTTTTTTACTTGGCGGAGATGAACGC</canonical>
            <polymorphic>AAATATCAAAATACAATGGGTGTGATGGTGCACTTTTCACCTGATTTTATATGTACATGTGAACAGAGATGGAAACAAAGAGTGCAAGCACACCATACATTCCCTCATCCCCAAATGTGTGAGAGAAACATATTTATTCTTCAAAAAACCAACATATTTGTAGTTTTGAATTGTAAAATGTGTATTCGTTTATTAAATTTAAAAACCAGAAGTCAAATTGTATTCTGGTAATTTGAGCCGATCTGACTGATGTATTCATGTTCAAATGTATAACTAGACTTTTTCAAACTAGAAAAGTATTGTCTAAACTAATTTTTCTTCGATTTAGTTGAACTAATTATAGTTTTAAAGTTTAACATTTCTAAAGTCTCGGTCCCTAATAATTGTTTTCAAAAATATCCTTTTTTGATACTTGCAGTTTCAAAGCATGCACTTCTAGGTAACCAGCTCAGCGCACGAGAATCTTTCTACTTCCACAGAATTTTTTATTTAGTTTTGCWTAGAAAATACGACTTTCATATTTCATGTTCCTCTAGAGAAATCAGTTGATAGAGTTGTAAACACGAAGATGTCTGGGAAATTTAAGTTCCTTTCATTTTCTATTTAAGTAGTCTGCCTCGTGATTTGAACTAGAACTAAACTAGTCTTAATATTTTTCTCACATGTCGCGAAAGTAGCCCAAAAAATCTGAAAAGAAAAATAAAAAATTGTGGTATTTTCAGATTTTTTTCCCTGTCTCAATAGAAAGACACTCTCGAGAACAATGGAAATAATGATAAAAGTTATGCACCAAAATATTTTGAATTTTCTGTATTTTCCTAAAATTATTACAATAAATTAAAAAAAAATCAAAATTTTCAAAAAACGTCGTTGTGAATTCAAAAAAAAGCAAAGAGGGACAAGGATTTGAATTCCGAGCAGTGAGAAATCTACGCCACGGCCGCGGACTGGCTTTTTTTCAAGGGGTTTTTTACGTTTTTTACTTGGCGGAGATGAACGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 448 51</canonical_bands>
                <polymorphic_bands>552 448</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAAAGTCTCGGTCCCTAATAAT</pcr_primer_p1>
		<pcr_primer_p2>ACTTAAATAGAAAATGAAAGGAACTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTAAAGTCTCGGTCCCTAATAATTGTTTTCAAAAATATCCTTTTTTGATACTTGCAGTTTCAAAGCATGCACTTCTAGGTAACCAGCTCAGCGCACGAGAATCTTTCTACTTCCACAGAATTTTTTATTTAGTTTTGCTTAGAAAATACGACTTTCATATTTCATGTTCCTCTAGAGAAATCAGTTGATAGAGTTGTAAACACGAAGATGTCTGGGAAATTTAAGTTCCTTTCATTTTCTATTTAAGT</canonical_amplicon>
		<polymorphic_amplicon>CTAAAGTCTCGGTCCCTAATAATTGTTTTCAAAAATATCCTTTTTTGATACTTGCAGTTTCAAAGCATGCACTTCTAGGTAACCAGCTCAGCGCACGAGAATCTTTCTACTTCCACAGAATTTTTTATTTAGTTTTGCWTAGAAAATACGACTTTCATATTTCATGTTCCTCTAGAGAAATCAGTTGATAGAGTTGTAAACACGAAGATGTCTGGGAAATTTAAGTTCCTTTCATTTTCTATTTAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb10999</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>506161</contig_pos>
        <strand>+</strand>
        <context>ACACTCTCGA[A/G]AACAATGRAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTGGTATTTTCAGATTTTTTTCCCTGTCTCAATAGAAAGACACTCTCGA</left_flank>
        <right_flank>AACAATGGAAATAATGATAAAAGTTATGCACCAAAATATTTTGAATTTTC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCAAATGTATAACTAGACTTTTTCAAACTAGAAAAGTATTGTCTAAACTAATTTTTCTTCGATTTAGTTGAACTAATTATAGTTTTAAAGTTTAACATTTCTAAAGTCTCGGTCCCTAATAATTGTTTTCAAAAATATCCTTTTTTGATACTTGCAGTTTCAAAGCATGCACTTCTAGGTAACCAGCTCAGCGCACGAGAATCTTTCTACTTCCACAGAATTTTTTATTTAGTTTTGCTTAGAAAATACGACTTTCATATTTCATGTTCCTCTAGAGAAATCAGTTGATAGAGTTGTAAACACGAAGATGTCTGGGAAATTTAAGTTCCTTTCATTTTCTATTTAAGTAGTCTGCCTCGTGATTTGAACTAGAACTAAACTAGTCTTAATATTTTTCTCACATGTCGCGAAAGTAGCCCAAAAAATCTGAAAAGAAAAATAAAAAATTGTGGTATTTTCAGATTTTTTTCCCTGTCTCAATAGAAAGACACTCTCGAGAACAATGGAAATAATGATAAAAGTTATGCACCAAAATATTTTGAATTTTCTGTATTTTCCTAAAATTATTACAATAAATTAAAAAAAAATCAAAATTTTCAAAAAACGTCGTTGTGAATTCAAAAAAAAGCAAAGAGGGACAAGGATTTGAATTCCGAGCAGTGAGAAATCTACGCCACGGCCGCGGACTGGCTTTTTTTCAAGGGGTTTTTTACGTTTTTTACTTGGCGGAGATGAACGCGGAGTAAATCCGGGAAAATTGATACCTAAAAAGGCGCACCGTCGCCATGACCTAGGTTTCCCACTGCGCGGGATCCTCGTCCTTATAAAAAATTTTGAAAATACATAACCTCCGGAACATTTATATGCAAAAAATTACAAAAAAATTGGAGAGAGTCCAAATATACACTTTTACACCCCCATCTTCCTAGCAGCCGATCTTTATGAATTTATCAACGAGCATTGGCCAACCCTGTCCTTGATAACAATATGTCTTGTTC</canonical>
            <polymorphic>GTTCAAATGTATAACTAGACTTTTTCAAACTAGAAAAGTATTGTCTAAACTAATTTTTCTTCGATTTAGTTGAACTAATTATAGTTTTAAAGTTTAACATTTCTAAAGTCTCGGTCCCTAATAATTGTTTTCAAAAATATCCTTTTTTGATACTTGCAGTTTCAAAGCATGCACTTCTAGGTAACCAGCTCAGCGCACGAGAATCTTTCTACTTCCACAGAATTTTTTATTTAGTTTTGCTTAGAAAATACGACTTTCATATTTCATGTTCCTCTAGAGAAATCAGTTGATAGAGTTGTAAACACGAAGATGTCTGGGAAATTTAAGTTCCTTTCATTTTCTATTTAAGTAGTCTGCCTCGTGATTTGAACTAGAACTAAACTAGTCTTAATATTTTTCTCACATGTCGCGAAAGTAGCCCAAAAAATCTGAAAAGAAAAATAAAAAATTGTGGTATTTTCAGATTTTTTTCCCTGTCTCAATAGAAAGACACTCTCGARAACAATGGAAATAATGATAAAAGTTATGCACCAAAATATTTTGAATTTTCTGTATTTTCCTAAAATTATTACAATAAATTAAAAAAAAATCAAAATTTTCAAAAAACGTCGTTGTGAATTCAAAAAAAAGCAAAGAGGGACAAGGATTTGAATTCCGAGCAGTGAGAAATCTACGCCACGGCCGCGGACTGGCTTTTTTTCAAGGGGTTTTTTACGTTTTTTACTTGGCGGAGATGAACGCGGAGTAAATCCGGGAAAATTGATACCTAAAAAGGCGCACCGTCGCCATGACCTAGGTTTCCCACTGCGCGGGATCCTCGTCCTTATAAAAAATTTTGAAAATACATAACCTCCGGAACATTTATATGCAAAAAATTACAAAAAAATTGGAGAGAGTCCAAATATACACTTTTACACCCCCATCTTCCTAGCAGCCGATCTTTATGAATTTATCAACGAGCATTGGCCAACCCTGTCCTTGATAACAATATGTCTTGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTCGAG</site>
                <isoschizomers>
                    <enzyme>BssHI</enzyme>
                    <enzyme>PaeR7I</enzyme>
                    <enzyme>SciI</enzyme>
                    <enzyme>Sfr274I</enzyme>
                    <enzyme>SlaI</enzyme>
                    <enzyme>TliI</enzyme>
                    <enzyme>XhoI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>356 274 147 87 86 48 2</canonical_bands>
                <polymorphic_bands>358 274 147 87 86 48</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTGTGGTATTTTCAGATTT</pcr_primer_p1>
		<pcr_primer_p2>GTGGCGTAGATTTCTCACTG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTGTGGTATTTTCAGATTTTTTTCCCTGTCTCAATAGAAAGACACTCTCGAGAACAATGGAAATAATGATAAAAGTTATGCACCAAAATATTTTGAATTTTCTGTATTTTCCTAAAATTATTACAATAAATTAAAAAAAAATCAAAATTTTCAAAAAACGTCGTTGTGAATTCAAAAAAAAGCAAAGAGGGACAAGGATTTGAATTCCGAGCAGTGAGAAATCTACGCCAC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTGTGGTATTTTCAGATTTTTTTCCCTGTCTCAATAGAAAGACACTCTCGARAACAATGGAAATAATGATAAAAGTTATGCACCAAAATATTTTGAATTTTCTGTATTTTCCTAAAATTATTACAATAAATTAAAAAAAAATCAAAATTTTCAAAAAACGTCGTTGTGAATTCAAAAAAAAGCAAAGAGGGACAAGGATTTGAATTCCGAGCAGTGAGAAATCTACGCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11000</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>506169</contig_pos>
        <strand>+</strand>
        <context>GARAACAATG[A/G]AAATAATGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCAGATTTTTTTCCCTGTCTCAATAGAAAGACACTCTCGAGAACAATG</left_flank>
        <right_flank>AAATAATGATAAAAGTTATGCACCAAAATATTTTGAATTTTCTGTATTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATAACTAGACTTTTTCAAACTAGAAAAGTATTGTCTAAACTAATTTTTCTTCGATTTAGTTGAACTAATTATAGTTTTAAAGTTTAACATTTCTAAAGTCTCGGTCCCTAATAATTGTTTTCAAAAATATCCTTTTTTGATACTTGCAGTTTCAAAGCATGCACTTCTAGGTAACCAGCTCAGCGCACGAGAATCTTTCTACTTCCACAGAATTTTTTATTTAGTTTTGCTTAGAAAATACGACTTTCATATTTCATGTTCCTCTAGAGAAATCAGTTGATAGAGTTGTAAACACGAAGATGTCTGGGAAATTTAAGTTCCTTTCATTTTCTATTTAAGTAGTCTGCCTCGTGATTTGAACTAGAACTAAACTAGTCTTAATATTTTTCTCACATGTCGCGAAAGTAGCCCAAAAAATCTGAAAAGAAAAATAAAAAATTGTGGTATTTTCAGATTTTTTTCCCTGTCTCAATAGAAAGACACTCTCGAGAACAATGGAAATAATGATAAAAGTTATGCACCAAAATATTTTGAATTTTCTGTATTTTCCTAAAATTATTACAATAAATTAAAAAAAAATCAAAATTTTCAAAAAACGTCGTTGTGAATTCAAAAAAAAGCAAAGAGGGACAAGGATTTGAATTCCGAGCAGTGAGAAATCTACGCCACGGCCGCGGACTGGCTTTTTTTCAAGGGGTTTTTTACGTTTTTTACTTGGCGGAGATGAACGCGGAGTAAATCCGGGAAAATTGATACCTAAAAAGGCGCACCGTCGCCATGACCTAGGTTTCCCACTGCGCGGGATCCTCGTCCTTATAAAAAATTTTGAAAATACATAACCTCCGGAACATTTATATGCAAAAAATTACAAAAAAATTGGAGAGAGTCCAAATATACACTTTTACACCCCCATCTTCCTAGCAGCCGATCTTTATGAATTTATCAACGAGCATTGGCCAACCCTGTCCTTGATAACAATATGTCTTGTTCTTAACATC</canonical>
            <polymorphic>GTATAACTAGACTTTTTCAAACTAGAAAAGTATTGTCTAAACTAATTTTTCTTCGATTTAGTTGAACTAATTATAGTTTTAAAGTTTAACATTTCTAAAGTCTCGGTCCCTAATAATTGTTTTCAAAAATATCCTTTTTTGATACTTGCAGTTTCAAAGCATGCACTTCTAGGTAACCAGCTCAGCGCACGAGAATCTTTCTACTTCCACAGAATTTTTTATTTAGTTTTGCTTAGAAAATACGACTTTCATATTTCATGTTCCTCTAGAGAAATCAGTTGATAGAGTTGTAAACACGAAGATGTCTGGGAAATTTAAGTTCCTTTCATTTTCTATTTAAGTAGTCTGCCTCGTGATTTGAACTAGAACTAAACTAGTCTTAATATTTTTCTCACATGTCGCGAAAGTAGCCCAAAAAATCTGAAAAGAAAAATAAAAAATTGTGGTATTTTCAGATTTTTTTCCCTGTCTCAATAGAAAGACACTCTCGAGAACAATGRAAATAATGATAAAAGTTATGCACCAAAATATTTTGAATTTTCTGTATTTTCCTAAAATTATTACAATAAATTAAAAAAAAATCAAAATTTTCAAAAAACGTCGTTGTGAATTCAAAAAAAAGCAAAGAGGGACAAGGATTTGAATTCCGAGCAGTGAGAAATCTACGCCACGGCCGCGGACTGGCTTTTTTTCAAGGGGTTTTTTACGTTTTTTACTTGGCGGAGATGAACGCGGAGTAAATCCGGGAAAATTGATACCTAAAAAGGCGCACCGTCGCCATGACCTAGGTTTCCCACTGCGCGGGATCCTCGTCCTTATAAAAAATTTTGAAAATACATAACCTCCGGAACATTTATATGCAAAAAATTACAAAAAAATTGGAGAGAGTCCAAATATACACTTTTACACCCCCATCTTCCTAGCAGCCGATCTTTATGAATTTATCAACGAGCATTGGCCAACCCTGTCCTTGATAACAATATGTCTTGTTCTTAACATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTGTGGTATTTTCAGATTT</pcr_primer_p1>
		<pcr_primer_p2>GTGGCGTAGATTTCTCACTG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTGTGGTATTTTCAGATTTTTTTCCCTGTCTCAATAGAAAGACACTCTCGAGAACAATGGAAATAATGATAAAAGTTATGCACCAAAATATTTTGAATTTTCTGTATTTTCCTAAAATTATTACAATAAATTAAAAAAAAATCAAAATTTTCAAAAAACGTCGTTGTGAATTCAAAAAAAAGCAAAGAGGGACAAGGATTTGAATTCCGAGCAGTGAGAAATCTACGCCAC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTGTGGTATTTTCAGATTTTTTTCCCTGTCTCAATAGAAAGACACTCTCGAGAACAATGRAAATAATGATAAAAGTTATGCACCAAAATATTTTGAATTTTCTGTATTTTCCTAAAATTATTACAATAAATTAAAAAAAAATCAAAATTTTCAAAAAACGTCGTTGTGAATTCAAAAAAAAGCAAAGAGGGACAAGGATTTGAATTCCGAGCAGTGAGAAATCTACGCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11001</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>507636</contig_pos>
        <strand>+</strand>
        <context>GTTCTCTGAA[A/C]CACAAAATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATCCCAAAACACGAATGGTAATTTTTGCAGGTCATGAATGTTCTCTGAA</left_flank>
        <right_flank>CACAAAATAACAATATGTATACGTCACAACGGGTAGTACTCCTGGTTTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCTCCTCCTCATTTTTCATTTCCTTCTCTTCTCACTTCTCGTCTACTGATTTGACGTCGTTGTCGGTCATTCACCGGTCCCCGTCGTCTTTCAACATCTACTACTACTCACCGTCTTCTCCGATTTCTGCGGGTTTCGATTTTCAGCGCATGCGCAACGACGACACGATCTGAAACTACGGAGAAAGAAAAAAAAAACAACAGAAAAAAAAAAACATAAAACTCCTGACCTATTACTTTATTACTCGCTTCTTCCTTCCTTCCTCCTCTTCCTTATTCTCTAATTTTTCTTTCATCTGAATCCAAAGTATTTCTGAGTCTGACGTCTTCTAACCTGGTTAGAATCTAGGTCAATGGAGCCCATTGCATCGGCATATGTGCGTGCCACATGCGATCTCATACCCAACATTTGTCAGTATTTCATGGACAATGAGTTCAACGCAACGTTGATCCCAAAACACGAATGGTAATTTTTGCAGGTCATGAATGTTCTCTGAAACACAAAATAACAATATGTATACGTCACAACGGGTAGTACTCCTGGTTTACCGGAAGACCAAAAAGGTTTTCAATTACCGGCCGAGAACCAAAGTCAGACTCCAAAAATAGAAAAATTGGGAGTCCCCAGTTGACCGAAATAGAAATAGAAAAATAAGAAACTTAAAATAAAACTAGCACTACATTCTTTCAGGATGCAAAGCGAGGAATTCCTCAATGCTGATGTCACCAAATGGGTTGAGAAATTTGTAAGTTTGGCTGAGAAGGTGTTTGAAAAATGCACAATTTTTCAGAGACGGGACCACGATGGAGACGATTCTGCACTACTGACACTGGTTCCGCCTGGTCTTTATGTGACACTCAACAAATACGTTTTCCCGTTTCAATTCTGTTTTGGAGTCATCGGAAATGTACTCAATTTGTGTGTGCTGCTCAGTAGAAATATGAGAAATGAGGTGAGTTATAATAGATCAAATTTCCTGTAATCTTTTTTTTTAATTT</canonical>
            <polymorphic>TGGCTCCTCCTCATTTTTCATTTCCTTCTCTTCTCACTTCTCGTCTACTGATTTGACGTCGTTGTCGGTCATTCACCGGTCCCCGTCGTCTTTCAACATCTACTACTACTCACCGTCTTCTCCGATTTCTGCGGGTTTCGATTTTCAGCGCATGCGCAACGACGACACGATCTGAAACTACGGAGAAAGAAAAAAAAAACAACAGAAAAAAAAAAACATAAAACTCCTGACCTATTACTTTATTACTCGCTTCTTCCTTCCTTCCTCCTCTTCCTTATTCTCTAATTTTTCTTTCATCTGAATCCAAAGTATTTCTGAGTCTGACGTCTTCTAACCTGGTTAGAATCTAGGTCAATGGAGCCCATTGCATCGGCATATGTGCGTGCCACATGCGATCTCATACCCAACATTTGTCAGTATTTCATGGACAATGAGTTCAACGCAACGTTGATCCCAAAACACGAATGGTAATTTTTGCAGGTCATGAATGTTCTCTGAAMCACAAAATAACAATATGTATACGTCACAACGGGTAGTACTCCTGGTTTACCGGAAGACCAAAAAGGTTTTCAATTACCGGCCGAGAACCAAAGTCAGACTCCAAAAATAGAAAAATTGGGAGTCCCCAGTTGACCGAAATAGAAATAGAAAAATAAGAAACTTAAAATAAAACTAGCACTACATTCTTTCAGGATGCAAAGCGAGGAATTCCTCAATGCTGATGTCACCAAATGGGTTGAGAAATTTGTAAGTTTGGCTGAGAAGGTGTTTGAAAAATGCACAATTTTTCAGAGACGGGACCACGATGGAGACGATTCTGCACTACTGACACTGGTTCCGCCTGGTCTTTATGTGACACTCAACAAATACGTTTTCCCGTTTCAATTCTGTTTTGGAGTCATCGGAAATGTACTCAATTTGTGTGTGCTGCTCAGTAGAAATATGAGAAATGAGGTGAGTTATAATAGATCAAATTTCCTGTAATCTTTTTTTTTAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACCCAACATTTGTCAGTATTTC</pcr_primer_p1>
		<pcr_primer_p2>TCTATTTCTATTTCGGTCAACTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TACCCAACATTTGTCAGTATTTCATGGACAATGAGTTCAACGCAACGTTGATCCCAAAACACGAATGGTAATTTTTGCAGGTCATGAATGTTCTCTGAAACACAAAATAACAATATGTATACGTCACAACGGGTAGTACTCCTGGTTTACCGGAAGACCAAAAAGGTTTTCAATTACCGGCCGAGAACCAAAGTCAGACTCCAAAAATAGAAAAATTGGGAGTCCCCAGTTGACCGAAATAGAAATAGA</canonical_amplicon>
		<polymorphic_amplicon>TACCCAACATTTGTCAGTATTTCATGGACAATGAGTTCAACGCAACGTTGATCCCAAAACACGAATGGTAATTTTTGCAGGTCATGAATGTTCTCTGAAMCACAAAATAACAATATGTATACGTCACAACGGGTAGTACTCCTGGTTTACCGGAAGACCAAAAAGGTTTTCAATTACCGGCCGAGAACCAAAGTCAGACTCCAAAAATAGAAAAATTGGGAGTCCCCAGTTGACCGAAATAGAAATAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11002</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>507459</contig_pos>
        <strand>+</strand>
        <context>TTCTGAGTCT[A/G]ACGTCTTCTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTTATTCTCTAATTTTTCTTTCATCTGAATCCAAAGTATTTCTGAGTCT</left_flank>
        <right_flank>ACGTCTTCTAACCTGGTTAGAATCTAGGTCAATGGAGCCCATTGCATCGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTATATACAAAATGCTGTTGTCCCCATAAATAACAAATCTATATTTCTCTCCAAATTCGTATCCATCCACACCTGATTCCTTAGTAACCGAGCACCTCTCTTGGGGCCATCGCCCCAGATCGACGCCATTTGTTTACCGAAACGGCTCCTTCTAGCGTTTCTTCTTCTCTTCTAATTGGCTCCTCCTCATTTTTCATTTCCTTCTCTTCTCACTTCTCGTCTACTGATTTGACGTCGTTGTCGGTCATTCACCGGTCCCCGTCGTCTTTCAACATCTACTACTACTCACCGTCTTCTCCGATTTCTGCGGGTTTCGATTTTCAGCGCATGCGCAACGACGACACGATCTGAAACTACGGAGAAAGAAAAAAAAAACAACAGAAAAAAAAAAACATAAAACTCCTGACCTATTACTTTATTACTCGCTTCTTCCTTCCTTCCTCCTCTTCCTTATTCTCTAATTTTTCTTTCATCTGAATCCAAAGTATTTCTGAGTCTGACGTCTTCTAACCTGGTTAGAATCTAGGTCAATGGAGCCCATTGCATCGGCATATGTGCGTGCCACATGCGATCTCATACCCAACATTTGTCAGTATTTCATGGACAATGAGTTCAACGCAACGTTGATCCCAAAACACGAATGGTAATTTTTGCAGGTCATGAATGTTCTCTGAAACACAAAATAACAATATGTATACGTCACAACGGGTAGTACTCCTGGTTTACCGGAAGACCAAAAAGGTTTTCAATTACCGGCCGAGAACCAAAGTCAGACTCCAAAAATAGAAAAATTGGGAGTCCCCAGTTGACCGAAATAGAAATAGAAAAATAAGAAACTTAAAATAAAACTAGCACTACATTCTTTCAGGATGCAAAGCGAGGAATTCCTCAATGCTGATGTCACCAAATGGGTTGAGAAATTTGTAAGTTTGGCTGAGAAGGTGTTTGAAAAATGCACAATTTTTCAGAGACGGGACCACGATGGAGACGATTCTGCAC</canonical>
            <polymorphic>TCTATATACAAAATGCTGTTGTCCCCATAAATAACAAATCTATATTTCTCTCCAAATTCGTATCCATCCACACCTGATTCCTTAGTAACCGAGCACCTCTCTTGGGGCCATCGCCCCAGATCGACGCCATTTGTTTACCGAAACGGCTCCTTCTAGCGTTTCTTCTTCTCTTCTAATTGGCTCCTCCTCATTTTTCATTTCCTTCTCTTCTCACTTCTCGTCTACTGATTTGACGTCGTTGTCGGTCATTCACCGGTCCCCGTCGTCTTTCAACATCTACTACTACTCACCGTCTTCTCCGATTTCTGCGGGTTTCGATTTTCAGCGCATGCGCAACGACGACACGATCTGAAACTACGGAGAAAGAAAAAAAAAACAACAGAAAAAAAAAAACATAAAACTCCTGACCTATTACTTTATTACTCGCTTCTTCCTTCCTTCCTCCTCTTCCTTATTCTCTAATTTTTCTTTCATCTGAATCCAAAGTATTTCTGAGTCTRACGTCTTCTAACCTGGTTAGAATCTAGGTCAATGGAGCCCATTGCATCGGCATATGTGCGTGCCACATGCGATCTCATACCCAACATTTGTCAGTATTTCATGGACAATGAGTTCAACGCAACGTTGATCCCAAAACACGAATGGTAATTTTTGCAGGTCATGAATGTTCTCTGAAACACAAAATAACAATATGTATACGTCACAACGGGTAGTACTCCTGGTTTACCGGAAGACCAAAAAGGTTTTCAATTACCGGCCGAGAACCAAAGTCAGACTCCAAAAATAGAAAAATTGGGAGTCCCCAGTTGACCGAAATAGAAATAGAAAAATAAGAAACTTAAAATAAAACTAGCACTACATTCTTTCAGGATGCAAAGCGAGGAATTCCTCAATGCTGATGTCACCAAATGGGTTGAGAAATTTGTAAGTTTGGCTGAGAAGGTGTTTGAAAAATGCACAATTTTTCAGAGACGGGACCACGATGGAGACGATTCTGCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACGTC</site>
                <isoschizomers>
                    <enzyme>AatII</enzyme>
                    <enzyme>ZraI</enzyme>
                </isoschizomers>
                <canonical_bands>496 268 236</canonical_bands>
                <polymorphic_bands>764 236</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>499 268 124 109</canonical_bands>
                <polymorphic_bands>767 124 109</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>300 195 174 126 100 50 32 17 6</canonical_bands>
                <polymorphic_bands>300 195 180 126 100 50 32 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACCTATTACTTTATTACTCGCTTCT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTACCATTCGTGTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GACCTATTACTTTATTACTCGCTTCTTCCTTCCTTCCTCCTCTTCCTTATTCTCTAATTTTTCTTTCATCTGAATCCAAAGTATTTCTGAGTCTGACGTCTTCTAACCTGGTTAGAATCTAGGTCAATGGAGCCCATTGCATCGGCATATGTGCGTGCCACATGCGATCTCATACCCAACATTTGTCAGTATTTCATGGACAATGAGTTCAACGCAACGTTGATCCCAAAACACGAATGGTAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>GACCTATTACTTTATTACTCGCTTCTTCCTTCCTTCCTCCTCTTCCTTATTCTCTAATTTTTCTTTCATCTGAATCCAAAGTATTTCTGAGTCTRACGTCTTCTAACCTGGTTAGAATCTAGGTCAATGGAGCCCATTGCATCGGCATATGTGCGTGCCACATGCGATCTCATACCCAACATTTGTCAGTATTTCATGGACAATGAGTTCAACGCAACGTTGATCCCAAAACACGAATGGTAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11033</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>507329</contig_pos>
        <strand></strand>
        <context>Gagaaaraaa[A/G]aaaaaacaac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCAGCGCATGCGCAACGACGACACGATCTGAAACTACGGAGAAAGAAA</left_flank>
        <right_flank>AAAAAACAACAGAAAAAAAAAAACATAAAACTCCTGACCTATTACTTTAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACCATAATTTCCTATTTTTGTTTCAACCGGTCATTATCACCCGTATCATACCAGTGTATACTACTGTAGTATTCCGTTAGTACGTCCCATGGGCTCACCTATTTTTCATTCTAGACACTCAAAAGTTCTCTATATACAAAATGCTGTTGTCCCCATAAATAACAAATCTATATTTCTCTCCAAATTCGTATCCATCCACACCTGATTCCTTAGTAACCGAGCACCTCTCTTGGGGCCATCGCCCCAGATCGACGCCATTTGTTTACCGAAACGGCTCCTTCTAGCGTTTCTTCTTCTCTTCTAATTGGCTCCTCCTCATTTTTCATTTCCTTCTCTTCTCACTTCTCGTCTACTGATTTGACGTCGTTGTCGGTCATTCACCGGTCCCCGTCGTCTTTCAACATCTACTACTACTCACCGTCTTCTCCGATTTCTGCGGGTTTCGATTTTCAGCGCATGCGCAACGACGACACGATCTGAAACTACGGAGAAAGAAAAAAAAAACAACAGAAAAAAAAAAACATAAAACTCCTGACCTATTACTTTATTACTCGCTTCTTCCTTCCTTCCTCCTCTTCCTTATTCTCTAATTTTTCTTTCATCTGAATCCAAAGTATTTCTGAGTCTGACGTCTTCTAACCTGGTTAGAATCTAGGTCAATGGAGCCCATTGCATCGGCATATGTGCGTGCCACATGCGATCTCATACCCAACATTTGTCAGTATTTCATGGACAATGAGTTCAACGCAACGTTGATCCCAAAACACGAATGGTAATTTTTGCAGGTCATGAATGTTCTCTGAAACACAAAATAACAATATGTATACGTCACAACGGGTAGTACTCCTGGTTTACCGGAAGACCAAAAAGGTTTTCAATTACCGGCCGAGAACCAAAGTCAGACTCCAAAAATAGAAAAATTGGGAGTCCCCAGTTGACCGAAATAGAAATAGAAAAATAAGAAACTTAAAATAAAACTAGCACTACATTCTTTCAGG</canonical>
            <polymorphic>AAACCATAATTTCCTATTTTTGTTTCAACCGGTCATTATCACCCGTATCATACCAGTGTATACTACTGTAGTATTCCGTTAGTACGTCCCATGGGCTCACCTATTTTTCATTCTAGACACTCAAAAGTTCTCTATATACAAAATGCTGTTGTCCCCATAAATAACAAATCTATATTTCTCTCCAAATTCGTATCCATCCACACCTGATTCCTTAGTAACCGAGCACCTCTCTTGGGGCCATCGCCCCAGATCGACGCCATTTGTTTACCGAAACGGCTCCTTCTAGCGTTTCTTCTTCTCTTCTAATTGGCTCCTCCTCATTTTTCATTTCCTTCTCTTCTCACTTCTCGTCTACTGATTTGACGTCGTTGTCGGTCATTCACCGGTCCCCGTCGTCTTTCAACATCTACTACTACTCACCGTCTTCTCCGATTTCTGCGGGTTTCGATTTTCAGCGCATGCGCAACGACGACACGATCTGAAACTACGGAGAAAGAAARAAAAAACAACAGAAAAAAAAAAACATAAAACTCCTGACCTATTACTTTATTACTCGCTTCTTCCTTCCTTCCTCCTCTTCCTTATTCTCTAATTTTTCTTTCATCTGAATCCAAAGTATTTCTGAGTCTGACGTCTTCTAACCTGGTTAGAATCTAGGTCAATGGAGCCCATTGCATCGGCATATGTGCGTGCCACATGCGATCTCATACCCAACATTTGTCAGTATTTCATGGACAATGAGTTCAACGCAACGTTGATCCCAAAACACGAATGGTAATTTTTGCAGGTCATGAATGTTCTCTGAAACACAAAATAACAATATGTATACGTCACAACGGGTAGTACTCCTGGTTTACCGGAAGACCAAAAAGGTTTTCAATTACCGGCCGAGAACCAAAGTCAGACTCCAAAAATAGAAAAATTGGGAGTCCCCAGTTGACCGAAATAGAAATAGAAAAATAAGAAACTTAAAATAAAACTAGCACTACATTCTTTCAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTTCTCGTCTACTGATTTGA</pcr_primer_p1>
		<pcr_primer_p2>TTAGAGAATAAGGAAGAGGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CACTTCTCGTCTACTGATTTGACGTCGTTGTCGGTCATTCACCGGTCCCCGTCGTCTTTCAACATCTACTACTACTCACCGTCTTCTCCGATTTCTGCGGGTTTCGATTTTCAGCGCATGCGCAACGACGACACGATCTGAAACTACGGAGAAAGAAAAAAAAAACAACAGAAAAAAAAAAACATAAAACTCCTGACCTATTACTTTATTACTCGCTTCTTCCTTCCTTCCTCCTCTTCCTTATTCTCTAA</canonical_amplicon>
		<polymorphic_amplicon>CACTTCTCGTCTACTGATTTGACGTCGTTGTCGGTCATTCACCGGTCCCCGTCGTCTTTCAACATCTACTACTACTCACCGTCTTCTCCGATTTCTGCGGGTTTCGATTTTCAGCGCATGCGCAACGACGACACGATCTGAAACTACGGAGAAAGAAARAAAAAACAACAGAAAAAAAAAAACATAAAACTCCTGACCTATTACTTTATTACTCGCTTCTTCCTTCCTTCCTCCTCTTCCTTATTCTCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11037</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>507325</contig_pos>
        <strand></strand>
        <context>TACGGagaaa[G/A]aaaraaaaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGATTTTCAGCGCATGCGCAACGACGACACGATCTGAAACTACGGAGAAA</left_flank>
        <right_flank>AAAAAAAAAACAACAGAAAAAAAAAAACATAAAACTCCTGACCTATTACT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTAAAACCATAATTTCCTATTTTTGTTTCAACCGGTCATTATCACCCGTATCATACCAGTGTATACTACTGTAGTATTCCGTTAGTACGTCCCATGGGCTCACCTATTTTTCATTCTAGACACTCAAAAGTTCTCTATATACAAAATGCTGTTGTCCCCATAAATAACAAATCTATATTTCTCTCCAAATTCGTATCCATCCACACCTGATTCCTTAGTAACCGAGCACCTCTCTTGGGGCCATCGCCCCAGATCGACGCCATTTGTTTACCGAAACGGCTCCTTCTAGCGTTTCTTCTTCTCTTCTAATTGGCTCCTCCTCATTTTTCATTTCCTTCTCTTCTCACTTCTCGTCTACTGATTTGACGTCGTTGTCGGTCATTCACCGGTCCCCGTCGTCTTTCAACATCTACTACTACTCACCGTCTTCTCCGATTTCTGCGGGTTTCGATTTTCAGCGCATGCGCAACGACGACACGATCTGAAACTACGGAGAAAGAAAAAAAAAACAACAGAAAAAAAAAAACATAAAACTCCTGACCTATTACTTTATTACTCGCTTCTTCCTTCCTTCCTCCTCTTCCTTATTCTCTAATTTTTCTTTCATCTGAATCCAAAGTATTTCTGAGTCTGACGTCTTCTAACCTGGTTAGAATCTAGGTCAATGGAGCCCATTGCATCGGCATATGTGCGTGCCACATGCGATCTCATACCCAACATTTGTCAGTATTTCATGGACAATGAGTTCAACGCAACGTTGATCCCAAAACACGAATGGTAATTTTTGCAGGTCATGAATGTTCTCTGAAACACAAAATAACAATATGTATACGTCACAACGGGTAGTACTCCTGGTTTACCGGAAGACCAAAAAGGTTTTCAATTACCGGCCGAGAACCAAAGTCAGACTCCAAAAATAGAAAAATTGGGAGTCCCCAGTTGACCGAAATAGAAATAGAAAAATAAGAAACTTAAAATAAAACTAGCACTACATTCTTT</canonical>
            <polymorphic>CCTAAAACCATAATTTCCTATTTTTGTTTCAACCGGTCATTATCACCCGTATCATACCAGTGTATACTACTGTAGTATTCCGTTAGTACGTCCCATGGGCTCACCTATTTTTCATTCTAGACACTCAAAAGTTCTCTATATACAAAATGCTGTTGTCCCCATAAATAACAAATCTATATTTCTCTCCAAATTCGTATCCATCCACACCTGATTCCTTAGTAACCGAGCACCTCTCTTGGGGCCATCGCCCCAGATCGACGCCATTTGTTTACCGAAACGGCTCCTTCTAGCGTTTCTTCTTCTCTTCTAATTGGCTCCTCCTCATTTTTCATTTCCTTCTCTTCTCACTTCTCGTCTACTGATTTGACGTCGTTGTCGGTCATTCACCGGTCCCCGTCGTCTTTCAACATCTACTACTACTCACCGTCTTCTCCGATTTCTGCGGGTTTCGATTTTCAGCGCATGCGCAACGACGACACGATCTGAAACTACGGAGAAARAAAAAAAAAACAACAGAAAAAAAAAAACATAAAACTCCTGACCTATTACTTTATTACTCGCTTCTTCCTTCCTTCCTCCTCTTCCTTATTCTCTAATTTTTCTTTCATCTGAATCCAAAGTATTTCTGAGTCTGACGTCTTCTAACCTGGTTAGAATCTAGGTCAATGGAGCCCATTGCATCGGCATATGTGCGTGCCACATGCGATCTCATACCCAACATTTGTCAGTATTTCATGGACAATGAGTTCAACGCAACGTTGATCCCAAAACACGAATGGTAATTTTTGCAGGTCATGAATGTTCTCTGAAACACAAAATAACAATATGTATACGTCACAACGGGTAGTACTCCTGGTTTACCGGAAGACCAAAAAGGTTTTCAATTACCGGCCGAGAACCAAAGTCAGACTCCAAAAATAGAAAAATTGGGAGTCCCCAGTTGACCGAAATAGAAATAGAAAAATAAGAAACTTAAAATAAAACTAGCACTACATTCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTTCTCGTCTACTGATTTGA</pcr_primer_p1>
		<pcr_primer_p2>TTAGAGAATAAGGAAGAGGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CACTTCTCGTCTACTGATTTGACGTCGTTGTCGGTCATTCACCGGTCCCCGTCGTCTTTCAACATCTACTACTACTCACCGTCTTCTCCGATTTCTGCGGGTTTCGATTTTCAGCGCATGCGCAACGACGACACGATCTGAAACTACGGAGAAAGAAAAAAAAAACAACAGAAAAAAAAAAACATAAAACTCCTGACCTATTACTTTATTACTCGCTTCTTCCTTCCTTCCTCCTCTTCCTTATTCTCTAA</canonical_amplicon>
		<polymorphic_amplicon>CACTTCTCGTCTACTGATTTGACGTCGTTGTCGGTCATTCACCGGTCCCCGTCGTCTTTCAACATCTACTACTACTCACCGTCTTCTCCGATTTCTGCGGGTTTCGATTTTCAGCGCATGCGCAACGACGACACGATCTGAAACTACGGAGAAARAAAAAAAAAACAACAGAAAAAAAAAAACATAAAACTCCTGACCTATTACTTTATTACTCGCTTCTTCCTTCCTTCCTCCTCTTCCTTATTCTCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11043</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>809</contig_pos>
        <strand>+</strand>
        <context>TTTTTCACTG[A/T]TGAAAATTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATAGCCTTAATTTCATAATAACCATGTCAAAAACTAGTTTTTCACTG</left_flank>
        <right_flank>TGAAAATTTGTCTCGTCAGAATGGAAACTTTACACAATCAGTTCCTTTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTGTACTATGTCAAAGCTCACATTTAAGAATAAAGTCCCACTAAAAACTTTAAAAAACTCTTTTCTCAAAGTAGACGAGACTCTTGTCCTAGACAGCAACAGTCCACTTGTTTCTTCTTTTTGCTTGCAAATTCGTGAACTCGCACCCTCTCTTTTTTATGCCGAAACTTTTCATTTATGTCGCTTAAGTACACTCATCGGATTTCACAGAAGATTTCGGGTAAACTGTTCACGCCAGTTGCAAAAAAAAGAGTCTCGAGTGAAATGAGGTGGAAAATGATGTTATTGACCTGGTTAATCTCCGTTTGAAGTAGAATACGTACAAGGGGAAATAGAGTATGGGATTTATATATGAAAAAATTATTAACCCTAGAGAGCAGCTTAAAACAAACATGTAAAGTAGCACTTAAAATAATTTATGAGGCTTATCGTATTGTTAAGTTTTCGAAAATAGCCTTAATTTCATAATAACCATGTCAAAAACTAGTTTTTCACTGTTGAAAATTTGTCTCGTCAGAATGGAAACTTTACACAATCAGTTCCTTTTTCAGAAGACCGTGATTTTCCTGAATTTTTAATTCTTCATATGTCAAGCAAACTCTCTTTCGAATAAGTTATTCACAGACTCTAGAAGATATAAGGCACCGTACAACACACAATAAATAAAGTAATTCTTAAAATACTATCCCGTTGATGTTTTTTAGAATTTATAAACCATAAAACCTATAATAGAAGACCGCCCACTTTCCAGTCTGAGCTCAATTATCTAAATTCCCATGCAATATTTAAAAAGTATGTCAACAGACAAAACACTCCTGATCTTATGACAAACAATTTATCAGTTGACATCTTTCCGATATCTTTGACAGGAACCGAACGAAAAGGACTGAAAGTTAAAAGTTAGGAACTCCTTCAAATTATAGGTTTTACGGTTATTTCACTTTCCAACCCCCTAATATTCAATTGAGACAAATCTTCATCAATCAGAAATCAGATAT</canonical>
            <polymorphic>TACTGTACTATGTCAAAGCTCACATTTAAGAATAAAGTCCCACTAAAAACTTTAAAAAACTCTTTTCTCAAAGTAGACGAGACTCTTGTCCTAGACAGCAACAGTCCACTTGTTTCTTCTTTTTGCTTGCAAATTCGTGAACTCGCACCCTCTCTTTTTTATGCCGAAACTTTTCATTTATGTCGCTTAAGTACACTCATCGGATTTCACAGAAGATTTCGGGTAAACTGTTCACGCCAGTTGCAAAAAAAAGAGTCTCGAGTGAAATGAGGTGGAAAATGATGTTATTGACCTGGTTAATCTCCGTTTGAAGTAGAATACGTACAAGGGGAAATAGAGTATGGGATTTATATATGAAAAAATTATTAACCCTAGAGAGCAGCTTAAAACAAACATGTAAAGTAGCACTTAAAATAATTTATGAGGCTTATCGTATTGTTAAGTTTTCGAAAATAGCCTTAATTTCATAATAACCATGTCAAAAACTAGTTTTTCACTGWTGAAAATTTGTCTCGTCAGAATGGAAACTTTACACAATCAGTTCCTTTTTCAGAAGACCGTGATTTTCCTGAATTTTTAATTCTTCATATGTCAAGCAAACTCTCTTTCGAATAAGTTATTCACAGACTCTAGAAGATATAAGGCACCGTACAACACACAATAAATAAAGTAATTCTTAAAATACTATCCCGTTGATGTTTTTTAGAATTTATAAACCATAAAACCTATAATAGAAGACCGCCCACTTTCCAGTCTGAGCTCAATTATCTAAATTCCCATGCAATATTTAAAAAGTATGTCAACAGACAAAACACTCCTGATCTTATGACAAACAATTTATCAGTTGACATCTTTCCGATATCTTTGACAGGAACCGAACGAAAAGGACTGAAAGTTAAAAGTTAGGAACTCCTTCAAATTATAGGTTTTACGGTTATTTCACTTTCCAACCCCCTAATATTCAATTGAGACAAATCTTCATCAATCAGAAATCAGATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>285 269 126 99 89 67 61 4</canonical_bands>
                <polymorphic_bands>330 285 126 99 89 67 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAAAATAGCCTTAATTTCATAA</pcr_primer_p1>
		<pcr_primer_p2>CATCAACGGGATAGTATTTTAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CGAAAATAGCCTTAATTTCATAATAACCATGTCAAAAACTAGTTTTTCACTGTTGAAAATTTGTCTCGTCAGAATGGAAACTTTACACAATCAGTTCCTTTTTCAGAAGACCGTGATTTTCCTGAATTTTTAATTCTTCATATGTCAAGCAAACTCTCTTTCGAATAAGTTATTCACAGACTCTAGAAGATATAAGGCACCGTACAACACACAATAAATAAAGTAATTCTTAAAATACTATCCCGTTGATG</canonical_amplicon>
		<polymorphic_amplicon>CGAAAATAGCCTTAATTTCATAATAACCATGTCAAAAACTAGTTTTTCACTGWTGAAAATTTGTCTCGTCAGAATGGAAACTTTACACAATCAGTTCCTTTTTCAGAAGACCGTGATTTTCCTGAATTTTTAATTCTTCATATGTCAAGCAAACTCTCTTTCGAATAAGTTATTCACAGACTCTAGAAGATATAAGGCACCGTACAACACACAATAAATAAAGTAATTCTTAAAATACTATCCCGTTGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11044</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>60923</contig_pos>
        <strand>+</strand>
        <context>CTGAAATTCG[G/T]GTTTCCAGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTGCAAAGCCAAATTTTTGATCTGTATACCTTTTAAATTCCTGAAATTCG</left_flank>
        <right_flank>GTTTCCAGGAATATCATCTTATGCTTGCTACACTGACCGCTGCAAAGTAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAAATCCGCAAGAAACGAATCGGCAAGAACGCTAAACCGTGCACAGTTTTGCTGAAATCGCGTGCGCAGGCTGTAAGAAAGGGCGGGATTTACCTGAACTGAATGAGAGATTTCTGAACTGCGAGAGACTNNNNNNNNNNTAGCGTTCTTGCCGATTCGTTTCTTGAGCTTCCGTTTCTTGCGGATTTCGATTCTTGCGGATTTGTACGGTCTCGAATCTGCAGCTGAAAAAAAACTATTTTTGCAAATTGGCTGAAAAAGATTTTTGCACTGAGTACGCAAGCAAAACAAATTACGCGCTATGGAGCCTTTTTGAAAAAAAAACATTTTCTCTTGCATTATTTTCTGAAACAATTATTTTTTATCAGTTTTCATGTGTTAGCTCCACTCTGCACGATTCTTACTGAGTTTTATCAGTTTCTTCTGATCTCACAAAATAAATCCGAACTGCAAAGCCAAATTTTTGATCTGTATACCTTTTAAATTCCTGAAATTCGTGTTTCCAGGAATATCATCTTATGCTTGCTACACTGACCGCTGCAAAGTACCTCACTCTTTCATTCGCGGTTTTCTACACTTTTGCTGTCCTTTTCGGTGCGCCGTTCTTTTCAGATATCATTGCGACTACTGTACTTGCTGTATGCTGACCAAATTAGAGAATAATTTCGCAAGCGATTATTTCAGGCTACTCTCACTCTCGTTACGGCATTACCAGCAGTTCTCATCTTCGATTCAGAGGAAAGATTTCTCGAAGTTTTGCTTCTTGCGTTTTCTGCTGATTATACCAAAACTACAAAAGAGTCCATTTATATTCTCACCTCCATTTTTGCCATTTTCGGCGCTTGGGCAGCTGCTGCTGTCCATCCTTTGGACTGGGATCGCTGGTGGCAGGTATGAGGAATTATGTTTGACATAGAAAAATTGTATTTCAGCGTTATCCATTGCCATCTCTTGCCGGGACCATCGTTGGTGCGTTTGTTGGCCTAATCATCAGCAGC</canonical>
            <polymorphic>TTGAAATCCGCAAGAAACGAATCGGCAAGAACGCTAAACCGTGCACAGTTTTGCTGAAATCGCGTGCGCAGGCTGTAAGAAAGGGCGGGATTTACCTGAACTGAATGAGAGATTTCTGAACTGCGAGAGACTNNNNNNNNNNTAGCGTTCTTGCCGATTCGTTTCTTGAGCTTCCGTTTCTTGCGGATTTCGATTCTTGCGGATTTGTACGGTCTCGAATCTGCAGCTGAAAAAAAACTATTTTTGCAAATTGGCTGAAAAAGATTTTTGCACTGAGTACGCAAGCAAAACAAATTACGCGCTATGGAGCCTTTTTGAAAAAAAAACATTTTCTCTTGCATTATTTTCTGAAACAATTATTTTTTATCAGTTTTCATGTGTTAGCTCCACTCTGCACGATTCTTACTGAGTTTTATCAGTTTCTTCTGATCTCACAAAATAAATCCGAACTGCAAAGCCAAATTTTTGATCTGTATACCTTTTAAATTCCTGAAATTCGKGTTTCCAGGAATATCATCTTATGCTTGCTACACTGACCGCTGCAAAGTACCTCACTCTTTCATTCGCGGTTTTCTACACTTTTGCTGTCCTTTTCGGTGCGCCGTTCTTTTCAGATATCATTGCGACTACTGTACTTGCTGTATGCTGACCAAATTAGAGAATAATTTCGCAAGCGATTATTTCAGGCTACTCTCACTCTCGTTACGGCATTACCAGCAGTTCTCATCTTCGATTCAGAGGAAAGATTTCTCGAAGTTTTGCTTCTTGCGTTTTCTGCTGATTATACCAAAACTACAAAAGAGTCCATTTATATTCTCACCTCCATTTTTGCCATTTTCGGCGCTTGGGCAGCTGCTGCTGTCCATCCTTTGGACTGGGATCGCTGGTGGCAGGTATGAGGAATTATGTTTGACATAGAAAAATTGTATTTCAGCGTTATCCATTGCCATCTCTTGCCGGGACCATCGTTGGTGCGTTTGTTGGCCTAATCATCAGCAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>206 123 108 97 85 70 67 43 38 31 26 24 22 21 21 9 7 2</canonical_bands>
                <polymorphic_bands>206 123 108 98 97 85 70 43 38 26 24 22 21 21 9 7 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCACGATTCTTACTGAGTTTTAT</pcr_primer_p1>
		<pcr_primer_p2>CAAGTACAGTAGTCGCAATGATA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GCACGATTCTTACTGAGTTTTATCAGTTTCTTCTGATCTCACAAAATAAATCCGAACTGCAAAGCCAAATTTTTGATCTGTATACCTTTTAAATTCCTGAAATTCGTGTTTCCAGGAATATCATCTTATGCTTGCTACACTGACCGCTGCAAAGTACCTCACTCTTTCATTCGCGGTTTTCTACACTTTTGCTGTCCTTTTCGGTGCGCCGTTCTTTTCAGATATCATTGCGACTACTGTACTTG</canonical_amplicon>
		<polymorphic_amplicon>GCACGATTCTTACTGAGTTTTATCAGTTTCTTCTGATCTCACAAAATAAATCCGAACTGCAAAGCCAAATTTTTGATCTGTATACCTTTTAAATTCCTGAAATTCGKGTTTCCAGGAATATCATCTTATGCTTGCTACACTGACCGCTGCAAAGTACCTCACTCTTTCATTCGCGGTTTTCTACACTTTTGCTGTCCTTTTCGGTGCGCCGTTCTTTTCAGATATCATTGCGACTACTGTACTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11067</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>108851</contig_pos>
        <strand>+</strand>
        <context>AAACATACTT[A/G]CAGGTATTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGAAAAGAATATTAAAAAGAGAAAAACGGGAGAGAGAAAAAACATACTT</left_flank>
        <right_flank>CAGGTATTGCTGGGGAGAGTTTCCACCACCAACACCAGCCCACGTCTTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAAAGTTATAACAGGAAAAATTATTATACCATTCTTCCTCTAATATAAGCCCAACCTACTTTGAGCTCTATTACCTTGATTCCTGTGAAAGATATCAATAACTTGTCAACTGATAAATTATTTATCATAATATCATCAACATTTTATCAGTTGACAAAATTTTGATATCTTTCATAGGGATAGAGATAACTGAGCTCAAAGTTAACGGCTTGGGAGGGCCTCTATTTCAGGAAATACGGAAAAAAACGACAACTGTTTAAAACGGATGAAAAAAATCAAATTCTGAAACAGTTTCAAGATAAATATTTGACAAAATTCAATTTCAGAAGAAATACCGACGGACGTTGAAGAGTTTCCATTGGAATATGTCGAAGACCAACTTCAGTTCTTGGATGGTGAGAGTTTGAAATTCTTGAAAACCACCCCCTAAAATATTCATAGCTCCAAAAGAAAAGAATATTAAAAAGAGAAAAACGGGAGAGAGAAAAAACATACTTACAGGTATTGCTGGGGAGAGTTTCCACCACCAACACCAGCCCACGTCTTCTTCGGCTCCGTTTTCCTTCCTAGACACCGTGAGATCGATTGGTGAAGAGTGTTATGGCGGCGACGACGAAAAGAGAAAGAATGGTGGCGCTGTGGAGAAAAACGTGGAGCAGCACCAAGAAGAGGACGAAGAGGAGACGAAGAAGAAGACGAAGAATAGTAGTCGTGAGGCTTTGGGAGATGGATCGGAGACGCAGAGAGGGGAGTCGACACAGCAGACACCCATCGATTCGGTGCTGGGTAGTCGTATGTTGAAGCGACCCAATTTTGGCTTCCTCTCTAATATTGCAAATGATGCTATTAATAAAGTAAGTGGTTTATTTTAATTAAATTTCAGGGATGTTAGTTTTGTGTCCTATGGAGCAGTGTGCGATTTTAATCTTAAAGTGCATAGGGACTTTTTGGGAGGTCCCCTTGGGAATTTCACTATACAATAAAAATAATTGCATTTC</canonical>
            <polymorphic>TTTAAAGTTATAACAGGAAAAATTATTATACCATTCTTCCTCTAATATAAGCCCAACCTACTTTGAGCTCTATTACCTTGATTCCTGTGAAAGATATCAATAACTTGTCAACTGATAAATTATTTATCATAATATCATCAACATTTTATCAGTTGACAAAATTTTGATATCTTTCATAGGGATAGAGATAACTGAGCTCAAAGTTAACGGCTTGGGAGGGCCTCTATTTCAGGAAATACGGAAAAAAACGACAACTGTTTAAAACGGATGAAAAAAATCAAATTCTGAAACAGTTTCAAGATAAATATTTGACAAAATTCAATTTCAGAAGAAATACCGACGGACGTTGAAGAGTTTCCATTGGAATATGTCGAAGACCAACTTCAGTTCTTGGATGGTGAGAGTTTGAAATTCTTGAAAACCACCCCCTAAAATATTCATAGCTCCAAAAGAAAAGAATATTAAAAAGAGAAAAACGGGAGAGAGAAAAAACATACTTRCAGGTATTGCTGGGGAGAGTTTCCACCACCAACACCAGCCCACGTCTTCTTCGGCTCCGTTTTCCTTCCTAGACACCGTGAGATCGATTGGTGAAGAGTGTTATGGCGGCGACGACGAAAAGAGAAAGAATGGTGGCGCTGTGGAGAAAAACGTGGAGCAGCACCAAGAAGAGGACGAAGAGGAGACGAAGAAGAAGACGAAGAATAGTAGTCGTGAGGCTTTGGGAGATGGATCGGAGACGCAGAGAGGGGAGTCGACACAGCAGACACCCATCGATTCGGTGCTGGGTAGTCGTATGTTGAAGCGACCCAATTTTGGCTTCCTCTCTAATATTGCAAATGATGCTATTAATAAAGTAAGTGGTTTATTTTAATTAAATTTCAGGGATGTTAGTTTTGTGTCCTATGGAGCAGTGTGCGATTTTAATCTTAAAGTGCATAGGGACTTTTTGGGAGGTCCCCTTGGGAATTTCACTATACAATAAAAATAATTGCATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATATGTCGAAGACCAACTTC</pcr_primer_p1>
		<pcr_primer_p2>CCATAACACTCTTCACCAATC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GAATATGTCGAAGACCAACTTCAGTTCTTGGATGGTGAGAGTTTGAAATTCTTGAAAACCACCCCCTAAAATATTCATAGCTCCAAAAGAAAAGAATATTAAAAAGAGAAAAACGGGAGAGAGAAAAAACATACTTACAGGTATTGCTGGGGAGAGTTTCCACCACCAACACCAGCCCACGTCTTCTTCGGCTCCGTTTTCCTTCCTAGACACCGTGAGATCGATTGGTGAAGAGTGTTATGG</canonical_amplicon>
		<polymorphic_amplicon>GAATATGTCGAAGACCAACTTCAGTTCTTGGATGGTGAGAGTTTGAAATTCTTGAAAACCACCCCCTAAAATATTCATAGCTCCAAAAGAAAAGAATATTAAAAAGAGAAAAACGGGAGAGAGAAAAAACATACTTRCAGGTATTGCTGGGGAGAGTTTCCACCACCAACACCAGCCCACGTCTTCTTCGGCTCCGTTTTCCTTCCTAGACACCGTGAGATCGATTGGTGAAGAGTGTTATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11068</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>108916</contig_pos>
        <strand>+</strand>
        <context>CTCCGTTTTC[C/T]TTCCTAGACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGAGTTTCCACCACCAACACCAGCCCACGTCTTCTTCGGCTCCGTTTTC</left_flank>
        <right_flank>TTCCTAGACACCGTGAGATCGATTGGTGAAGAGTGTTATGGCGGCGACGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTCTATTACCTTGATTCCTGTGAAAGATATCAATAACTTGTCAACTGATAAATTATTTATCATAATATCATCAACATTTTATCAGTTGACAAAATTTTGATATCTTTCATAGGGATAGAGATAACTGAGCTCAAAGTTAACGGCTTGGGAGGGCCTCTATTTCAGGAAATACGGAAAAAAACGACAACTGTTTAAAACGGATGAAAAAAATCAAATTCTGAAACAGTTTCAAGATAAATATTTGACAAAATTCAATTTCAGAAGAAATACCGACGGACGTTGAAGAGTTTCCATTGGAATATGTCGAAGACCAACTTCAGTTCTTGGATGGTGAGAGTTTGAAATTCTTGAAAACCACCCCCTAAAATATTCATAGCTCCAAAAGAAAAGAATATTAAAAAGAGAAAAACGGGAGAGAGAAAAAACATACTTACAGGTATTGCTGGGGAGAGTTTCCACCACCAACACCAGCCCACGTCTTCTTCGGCTCCGTTTTCCTTCCTAGACACCGTGAGATCGATTGGTGAAGAGTGTTATGGCGGCGACGACGAAAAGAGAAAGAATGGTGGCGCTGTGGAGAAAAACGTGGAGCAGCACCAAGAAGAGGACGAAGAGGAGACGAAGAAGAAGACGAAGAATAGTAGTCGTGAGGCTTTGGGAGATGGATCGGAGACGCAGAGAGGGGAGTCGACACAGCAGACACCCATCGATTCGGTGCTGGGTAGTCGTATGTTGAAGCGACCCAATTTTGGCTTCCTCTCTAATATTGCAAATGATGCTATTAATAAAGTAAGTGGTTTATTTTAATTAAATTTCAGGGATGTTAGTTTTGTGTCCTATGGAGCAGTGTGCGATTTTAATCTTAAAGTGCATAGGGACTTTTTGGGAGGTCCCCTTGGGAATTTCACTATACAATAAAAATAATTGCATTTCAGGGAACAATAATATTCGTGATTTCTTTTCTGATAATATTATGTTTTGGATATCTAACCGTTATG</canonical>
            <polymorphic>AGCTCTATTACCTTGATTCCTGTGAAAGATATCAATAACTTGTCAACTGATAAATTATTTATCATAATATCATCAACATTTTATCAGTTGACAAAATTTTGATATCTTTCATAGGGATAGAGATAACTGAGCTCAAAGTTAACGGCTTGGGAGGGCCTCTATTTCAGGAAATACGGAAAAAAACGACAACTGTTTAAAACGGATGAAAAAAATCAAATTCTGAAACAGTTTCAAGATAAATATTTGACAAAATTCAATTTCAGAAGAAATACCGACGGACGTTGAAGAGTTTCCATTGGAATATGTCGAAGACCAACTTCAGTTCTTGGATGGTGAGAGTTTGAAATTCTTGAAAACCACCCCCTAAAATATTCATAGCTCCAAAAGAAAAGAATATTAAAAAGAGAAAAACGGGAGAGAGAAAAAACATACTTACAGGTATTGCTGGGGAGAGTTTCCACCACCAACACCAGCCCACGTCTTCTTCGGCTCCGTTTTCYTTCCTAGACACCGTGAGATCGATTGGTGAAGAGTGTTATGGCGGCGACGACGAAAAGAGAAAGAATGGTGGCGCTGTGGAGAAAAACGTGGAGCAGCACCAAGAAGAGGACGAAGAGGAGACGAAGAAGAAGACGAAGAATAGTAGTCGTGAGGCTTTGGGAGATGGATCGGAGACGCAGAGAGGGGAGTCGACACAGCAGACACCCATCGATTCGGTGCTGGGTAGTCGTATGTTGAAGCGACCCAATTTTGGCTTCCTCTCTAATATTGCAAATGATGCTATTAATAAAGTAAGTGGTTTATTTTAATTAAATTTCAGGGATGTTAGTTTTGTGTCCTATGGAGCAGTGTGCGATTTTAATCTTAAAGTGCATAGGGACTTTTTGGGAGGTCCCCTTGGGAATTTCACTATACAATAAAAATAATTGCATTTCAGGGAACAATAATATTCGTGATTTCTTTTCTGATAATATTATGTTTTGGATATCTAACCGTTATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTCTTGGATGGTGAGAGTT</pcr_primer_p1>
		<pcr_primer_p2>CATTCTTTCTCTTTTCGTCGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGTTCTTGGATGGTGAGAGTTTGAAATTCTTGAAAACCACCCCCTAAAATATTCATAGCTCCAAAAGAAAAGAATATTAAAAAGAGAAAAACGGGAGAGAGAAAAAACATACTTACAGGTATTGCTGGGGAGAGTTTCCACCACCAACACCAGCCCACGTCTTCTTCGGCTCCGTTTTCCTTCCTAGACACCGTGAGATCGATTGGTGAAGAGTGTTATGGCGGCGACGACGAAAAGAGAAAGAATG</canonical_amplicon>
		<polymorphic_amplicon>AGTTCTTGGATGGTGAGAGTTTGAAATTCTTGAAAACCACCCCCTAAAATATTCATAGCTCCAAAAGAAAAGAATATTAAAAAGAGAAAAACGGGAGAGAGAAAAAACATACTTACAGGTATTGCTGGGGAGAGTTTCCACCACCAACACCAGCCCACGTCTTCTTCGGCTCCGTTTTCYTTCCTAGACACCGTGAGATCGATTGGTGAAGAGTGTTATGGCGGCGACGACGAAAAGAGAAAGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11109</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>112080</contig_pos>
        <strand>+</strand>
        <context>CCTAACATTT[C/T]GATGGGTCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAATATTCCAAGCCTCCACCTCCACCAAAAATGGGTCAACCTAACATTT</left_flank>
        <right_flank>GATGGGTCTAGAAGATCTCTCAGAAGCTGATCGACAAAAGGTACTTTCGG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGTTCCGCCTGGCTTAGAGGATTTATCAGAAGAGGAACGTCAGAAGATCATGTCCGTTATGATGAATGCTGAAGAAGAAGAATCTAGAAGTCAACTTCCATCAAGACAGCCGAGTCGATCACCCAGCTTTGTTAGTATTCAACAGCCAATGTAAGTATTAAAATTGTTGTTTTTTTTTCACTAATTGTTTATTTACAGAATGTCATCTATTCCACCCGGTTTAGAAGATTTGTCAGATGCTGAAAGACAAAAAATCATGTCTGTTATGGCAGAAGCAGAAGTTCAGAATTTGGTTCCCAGTCGATCCCCTAGCAGTTATTCAATGATCCCAGCTCCGGTGGTACCGCCTGGTTTGGATGATTTATCGGAAGCTGAGAAACAAAAAATAATGTCAGTAATGGCAAAAGCAGAGTTTGTTTCACAAATGGTTCCAAGTGTTTCTGCAAGTCAATATTCCAAGCCTCCACCTCCACCAAAAATGGGTCAACCTAACATTTCGATGGGTCTAGAAGATCTCTCAGAAGCTGATCGACAAAAGGTACTTTCGGTTATGGCAGAAGCAGAAAGCGATTCGCTGAAAGGCCCAATCAGATCTCATTCATCCACTCAAATCATTCCACCTGGATTAGAAGATTTATCGGAAGAAGAACGAAGAAAAATAATGTCGGTCATGGCAAATGCCGAAGTAGAAGATACGATTCGACCAACAGAGCAATTTTTGCCACGTGGACATACTGGGTTCGCACCAACTGGAATTGTGAATGAGGATGAATTGTTCGAAAGAGAAAGCAAGCAGAGAGAAGAATCTCCAACCAGAGAATCTGGATATGCCACGTCGACATCATACGAACGAGAGTTAACGATGGTGAGTGTGAAATATAGTGTAATCAGATACTTTTAAGGGAGTAAAAAAAATGGAAGAGACGATTCTCATTTTCTTTAGATTCAGCACCAATTTTTTCTTTTTCTTTTCTCTTCTGCCCTTTTATTTTTCTCGG</canonical>
            <polymorphic>ATGGTTCCGCCTGGCTTAGAGGATTTATCAGAAGAGGAACGTCAGAAGATCATGTCCGTTATGATGAATGCTGAAGAAGAAGAATCTAGAAGTCAACTTCCATCAAGACAGCCGAGTCGATCACCCAGCTTTGTTAGTATTCAACAGCCAATGTAAGTATTAAAATTGTTGTTTTTTTTTCACTAATTGTTTATTTACAGAATGTCATCTATTCCACCCGGTTTAGAAGATTTGTCAGATGCTGAAAGACAAAAAATCATGTCTGTTATGGCAGAAGCAGAAGTTCAGAATTTGGTTCCCAGTCGATCCCCTAGCAGTTATTCAATGATCCCAGCTCCGGTGGTACCGCCTGGTTTGGATGATTTATCGGAAGCTGAGAAACAAAAAATAATGTCAGTAATGGCAAAAGCAGAGTTTGTTTCACAAATGGTTCCAAGTGTTTCTGCAAGTCAATATTCCAAGCCTCCACCTCCACCAAAAATGGGTCAACCTAACATTTYGATGGGTCTAGAAGATCTCTCAGAAGCTGATCGACAAAAGGTACTTTCGGTTATGGCAGAAGCAGAAAGCGATTCGCTGAAAGGCCCAATCAGATCTCATTCATCCACTCAAATCATTCCACCTGGATTAGAAGATTTATCGGAAGAAGAACGAAGAAAAATAATGTCGGTCATGGCAAATGCCGAAGTAGAAGATACGATTCGACCAACAGAGCAATTTTTGCCACGTGGACATACTGGGTTCGCACCAACTGGAATTGTGAATGAGGATGAATTGTTCGAAAGAGAAAGCAAGCAGAGAGAAGAATCTCCAACCAGAGAATCTGGATATGCCACGTCGACATCATACGAACGAGAGTTAACGATGGTGAGTGTGAAATATAGTGTAATCAGATACTTTTAAGGGAGTAAAAAAAATGGAAGAGACGATTCTCATTTTCTTTAGATTCAGCACCAATTTTTTCTTTTTCTTTTCTCTTCTGCCCTTTTATTTTTCTCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>196 186 171 161 118 77 59 32</canonical_bands>
                <polymorphic_bands>228 186 171 161 118 77 59</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGCAGAGTTTGTTTCAC</pcr_primer_p1>
		<pcr_primer_p2>GTTCTTCTTCCGATAAATCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGCAGAGTTTGTTTCACAAATGGTTCCAAGTGTTTCTGCAAGTCAATATTCCAAGCCTCCACCTCCACCAAAAATGGGTCAACCTAACATTTCGATGGGTCTAGAAGATCTCTCAGAAGCTGATCGACAAAAGGTACTTTCGGTTATGGCAGAAGCAGAAAGCGATTCGCTGAAAGGCCCAATCAGATCTCATTCATCCACTCAAATCATTCCACCTGGATTAGAAGATTTATCGGAAGAAGAAC</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGCAGAGTTTGTTTCACAAATGGTTCCAAGTGTTTCTGCAAGTCAATATTCCAAGCCTCCACCTCCACCAAAAATGGGTCAACCTAACATTTYGATGGGTCTAGAAGATCTCTCAGAAGCTGATCGACAAAAGGTACTTTCGGTTATGGCAGAAGCAGAAAGCGATTCGCTGAAAGGCCCAATCAGATCTCATTCATCCACTCAAATCATTCCACCTGGATTAGAAGATTTATCGGAAGAAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11110</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>116901</contig_pos>
        <strand>+</strand>
        <context>GAAAAAGAAG[A/G]GAGAAAGCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAAGAGAAAAGAGAGACCTCCCGAGAGCAGTAGAAAAAGGAAAAAGAAG</left_flank>
        <right_flank>GAGAAAGCATGCATACACTTTTTATGGGCTAATCGAAAAAGAGCATCGTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTTATAATTTTCTGGATTCTTCAAAATAAAACAAAAAAATTAGCATGCAATCAAGGACCTTTAGTTTTTATGAAGATTCAGCAGGTCAGGAACAGCACAAGAGCAGTTTTGAGTGTTTCAAAATAGTCTCATACAATTTTCAAAGCTCTAAAGGTGGAATCAATATTCTTCTCCTTTTGAATAGAAAAGCATCTGCTGCTTAATTTCCTGTTGTGACAACGGAAGACAAACTTTTTCCCGTTCAATGCTCTCTCTTCCATGTGTGTGTCCATTTCAAAAACGTTTTTAAGAAGACGTTTCCTCTTCCTAGCCGCCTTTTTCCTTTCCTTCTTCTTCTCATCGTTTTGTTCTTTTGGCGCCGCCACTCTCACCAAATGCCTCTCTCAACATAACAGTCGTTGCTTTCGAGCAAAAAAAAAAGAAAAGAGAGTGCTTGGCGAATCGCATAAGAGAAAAGAGAGACCTCCCGAGAGCAGTAGAAAAAGGAAAAAGAAGAGAGAAAGCATGCATACACTTTTTATGGGCTAATCGAAAAAGAGCATCGTGAAGAAAAACGAATAATAGGCAGATATTTTGGAAATGATATATGCAAAGAAAGATATTACGATAGTCTTATCCCCCAGCTGAATTTCATGATGAATGCATCTGGTTAATCCAATTTTCGCTAGCGATCCATCACTTTCGAAATCTAATCGAGAGAAAAACAAAAAGAAAAAAGTTTTCAATTCTTGAGACTCTGATCCAATTCCAAATTCAAAAAACTTTTCGAACAGCCATAAAAACTTTTGACCCATTTCCAGGATGATGGAAATCTCGCCAATAACGAAATGGGTCGCCGAAAACTTCCATCGATCCCACCTAACTCGTCGGCGTTCCCACCGCCAGCTTCGACCTCCATCAATGTCGTCAATCACACATCAATGCCTTCCACGTCTTCTGCAACAGTTCCAACATTTGTGGACGACTACAACGTCACATTACCTTCCGATCCAATAG</canonical>
            <polymorphic>AATTTTTATAATTTTCTGGATTCTTCAAAATAAAACAAAAAAATTAGCATGCAATCAAGGACCTTTAGTTTTTATGAAGATTCAGCAGGTCAGGAACAGCACAAGAGCAGTTTTGAGTGTTTCAAAATAGTCTCATACAATTTTCAAAGCTCTAAAGGTGGAATCAATATTCTTCTCCTTTTGAATAGAAAAGCATCTGCTGCTTAATTTCCTGTTGTGACAACGGAAGACAAACTTTTTCCCGTTCAATGCTCTCTCTTCCATGTGTGTGTCCATTTCAAAAACGTTTTTAAGAAGACGTTTCCTCTTCCTAGCCGCCTTTTTCCTTTCCTTCTTCTTCTCATCGTTTTGTTCTTTTGGCGCCGCCACTCTCACCAAATGCCTCTCTCAACATAACAGTCGTTGCTTTCGAGCAAAAAAAAAAGAAAAGAGAGTGCTTGGCGAATCGCATAAGAGAAAAGAGAGACCTCCCGAGAGCAGTAGAAAAAGGAAAAAGAAGRGAGAAAGCATGCATACACTTTTTATGGGCTAATCGAAAAAGAGCATCGTGAAGAAAAACGAATAATAGGCAGATATTTTGGAAATGATATATGCAAAGAAAGATATTACGATAGTCTTATCCCCCAGCTGAATTTCATGATGAATGCATCTGGTTAATCCAATTTTCGCTAGCGATCCATCACTTTCGAAATCTAATCGAGAGAAAAACAAAAAGAAAAAAGTTTTCAATTCTTGAGACTCTGATCCAATTCCAAATTCAAAAAACTTTTCGAACAGCCATAAAAACTTTTGACCCATTTCCAGGATGATGGAAATCTCGCCAATAACGAAATGGGTCGCCGAAAACTTCCATCGATCCCACCTAACTCGTCGGCGTTCCCACCGCCAGCTTCGACCTCCATCAATGTCGTCAATCACACATCAATGCCTTCCACGTCTTCTGCAACAGTTCCAACATTTGTGGACGACTACAACGTCACATTACCTTCCGATCCAATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTTCCTTTCCTTCTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>TATTATTCGTTTTTCTTCACGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTTTTCCTTTCCTTCTTCTTCTCATCGTTTTGTTCTTTTGGCGCCGCCACTCTCACCAAATGCCTCTCTCAACATAACAGTCGTTGCTTTCGAGCAAAAAAAAAAGAAAAGAGAGTGCTTGGCGAATCGCATAAGAGAAAAGAGAGACCTCCCGAGAGCAGTAGAAAAAGGAAAAAGAAGAGAGAAAGCATGCATACACTTTTTATGGGCTAATCGAAAAAGAGCATCGTGAAGAAAAACGAATAATA</canonical_amplicon>
		<polymorphic_amplicon>CTTTTTCCTTTCCTTCTTCTTCTCATCGTTTTGTTCTTTTGGCGCCGCCACTCTCACCAAATGCCTCTCTCAACATAACAGTCGTTGCTTTCGAGCAAAAAAAAAAGAAAAGAGAGTGCTTGGCGAATCGCATAAGAGAAAAGAGAGACCTCCCGAGAGCAGTAGAAAAAGGAAAAAGAAGRGAGAAAGCATGCATACACTTTTTATGGGCTAATCGAAAAAGAGCATCGTGAAGAAAAACGAATAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11168</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>130961</contig_pos>
        <strand>+</strand>
        <context>CATTCACGCC[A/T]TCTGCGAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATTTTTCTTGCGATTTCCAGATTGGATATTTGATCCACGCATTCACGCC</left_flank>
        <right_flank>TCTGCGAATTGAAACGGTGAGGTGATAACCAAATTTAATTGTAGATCGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGGTAGATAGATTGGTGGTTCTATAAACGCAAGTGGAATTACTATTGCTCCGACATTTGAATTGTAAAGCATTGTTGGTTCTGTGATTGGGAATTCTGTGGTATCATCACTGAAGAAAAATACATAAATAATTACAAAACATTGATCTTCTCACCTATCCAAATACGTTCCAATTTGAGACAGAGCGTAGTCTCTTTCCGCTTTTCCAACACGGATACTCGAATCAAAATAATCAGTTTCATTGAGAGATAACTGAGATACTGGCCTCCAAATCAATTCTTCATTTTGAAGTCGTCTCGGAAAACCAACATAGAATCCAAGCCGATTTATGTTGGATAGATATTGTAAAGGAGTACTCCGATGGACAGATAAAAAGTCAATTTTGAGATTTTGAAGAAATTCGACAGTTTTTGAGAGATTCATTGATTGAGACGCTTTGTCGACATACATTTTTCTTGCGATTTCCAGATTGGATATTTGATCCACGCATTCACGCCATCTGCGAATTGAAACGGTGAGGTGATAACCAAATTTAATTGTAGATCGAAGATCACAAGATCTACAGCACCGGTCAATGAGAAAAACAAAAAAGTATATTTCAGTTGATTTTTGGTCATTTCGATCATTTTCAGGAGACTGGAGCACGGCTCTCAAGTTTCCGAGCTGTTTGAAAATTTCGGGGTGTCTTTCAGTAATCCGCAAATAGCTGAAAAACTAAGAATTCGCAAAAAGTTTTGTGAAAGCAAGTTTTTCAATCTAGGGCTGTTTTACACCCTTCTAACTTTTCAAAATGATCGAAAACTTGGCAGCCGAGCTCCACCCATTGACAACGGTAGAAATGGCTGAAAATCAACTGAAAAAAACGTTTTTTATATTTTATTGACCGGTACTGTAGATCTTGTGGTTTTCGGTCTACAATTAAACTTGGATGTAGTTTGGATGTATTTGTGTTGGATGTAGAAACATCCATTTCAGGAGGATTCTCGATTTTTTTCCCA</canonical>
            <polymorphic>CCTGGTAGATAGATTGGTGGTTCTATAAACGCAAGTGGAATTACTATTGCTCCGACATTTGAATTGTAAAGCATTGTTGGTTCTGTGATTGGGAATTCTGTGGTATCATCACTGAAGAAAAATACATAAATAATTACAAAACATTGATCTTCTCACCTATCCAAATACGTTCCAATTTGAGACAGAGCGTAGTCTCTTTCCGCTTTTCCAACACGGATACTCGAATCAAAATAATCAGTTTCATTGAGAGATAACTGAGATACTGGCCTCCAAATCAATTCTTCATTTTGAAGTCGTCTCGGAAAACCAACATAGAATCCAAGCCGATTTATGTTGGATAGATATTGTAAAGGAGTACTCCGATGGACAGATAAAAAGTCAATTTTGAGATTTTGAAGAAATTCGACAGTTTTTGAGAGATTCATTGATTGAGACGCTTTGTCGACATACATTTTTCTTGCGATTTCCAGATTGGATATTTGATCCACGCATTCACGCCWTCTGCGAATTGAAACGGTGAGGTGATAACCAAATTTAATTGTAGATCGAAGATCACAAGATCTACAGCACCGGTCAATGAGAAAAACAAAAAAGTATATTTCAGTTGATTTTTGGTCATTTCGATCATTTTCAGGAGACTGGAGCACGGCTCTCAAGTTTCCGAGCTGTTTGAAAATTTCGGGGTGTCTTTCAGTAATCCGCAAATAGCTGAAAAACTAAGAATTCGCAAAAAGTTTTGTGAAAGCAAGTTTTTCAATCTAGGGCTGTTTTACACCCTTCTAACTTTTCAAAATGATCGAAAACTTGGCAGCCGAGCTCCACCCATTGACAACGGTAGAAATGGCTGAAAATCAACTGAAAAAAACGTTTTTTATATTTTATTGACCGGTACTGTAGATCTTGTGGTTTTCGGTCTACAATTAAACTTGGATGTAGTTTGGATGTATTTGTGTTGGATGTAGAAACATCCATTTCAGGAGGATTCTCGATTTTTTTCCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATACATTTTTCTTGCGATTT</pcr_primer_p1>
		<pcr_primer_p2>TTAATTGTAGACCGAAAACCAC</pcr_primer_p2>
		<pcr_amplicon_size>480</pcr_amplicon_size>
		<canonical_amplicon>ACATACATTTTTCTTGCGATTTCCAGATTGGATATTTGATCCACGCATTCACGCCATCTGCGAATTGAAACGGTGAGGTGATAACCAAATTTAATTGTAGATCGAAGATCACAAGATCTACAGCACCGGTCAATGAGAAAAACAAAAAAGTATATTTCAGTTGATTTTTGGTCATTTCGATCATTTTCAGGAGACTGGAGCACGGCTCTCAAGTTTCCGAGCTGTTTGAAAATTTCGGGGTGTCTTTCAGTAATCCGCAAATAGCTGAAAAACTAAGAATTCGCAAAAAGTTTTGTGAAAGCAAGTTTTTCAATCTAGGGCTGTTTTACACCCTTCTAACTTTTCAAAATGATCGAAAACTTGGCAGCCGAGCTCCACCCATTGACAACGGTAGAAATGGCTGAAAATCAACTGAAAAAAACGTTTTTTATATTTTATTGACCGGTACTGTAGATCTTGTGGTTTTCGGTCTACAATTAA</canonical_amplicon>
		<polymorphic_amplicon>ACATACATTTTTCTTGCGATTTCCAGATTGGATATTTGATCCACGCATTCACGCCWTCTGCGAATTGAAACGGTGAGGTGATAACCAAATTTAATTGTAGATCGAAGATCACAAGATCTACAGCACCGGTCAATGAGAAAAACAAAAAAGTATATTTCAGTTGATTTTTGGTCATTTCGATCATTTTCAGGAGACTGGAGCACGGCTCTCAAGTTTCCGAGCTGTTTGAAAATTTCGGGGTGTCTTTCAGTAATCCGCAAATAGCTGAAAAACTAAGAATTCGCAAAAAGTTTTGTGAAAGCAAGTTTTTCAATCTAGGGCTGTTTTACACCCTTCTAACTTTTCAAAATGATCGAAAACTTGGCAGCCGAGCTCCACCCATTGACAACGGTAGAAATGGCTGAAAATCAACTGAAAAAAACGTTTTTTATATTTTATTGACCGGTACTGTAGATCTTGTGGTTTTCGGTCTACAATTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11169</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>262916</contig_pos>
        <strand>+</strand>
        <context>TAGCGCGGAT[A/G]ATATTGGGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGATCCCATGTACCCTCCGAACCAATGCACTCTTGGATTCTAGCGCGGAT</left_flank>
        <right_flank>ATATTGGGATGAAAAAACAAGTGTGAGGTCATCGGAAGTCTGACTTACGC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAACACATAAGGGGGGAACCCTTATGTGATTTGTTTCGATTAAAAAAATCATTTTTCGAGTTTTTTCGATCTTCTTAGATCAAACAGACAAACAATCCAAAAAAACAAGAAAAATGAAGAAAATTATATTGAGATTTGGCTCAAAAATACAGAATTTTGATACCGGGTCTTGAAAATTTCCTCAAGCCCGGCCCGGGCTTTGTCGGGCCGGCCCGGAATTTACAAGTATGGGGATCGGGAGGCTCTAAATATCTAATTGGTGAAAATTGCGGAGATAAGGACCCAATATCCAAGGGTACATTTAGTTTTTATAGTTAGGAGCACATTGGTTTTAAGGGTTAATTGGATTTTGTGGTACATATGGGAGGGCAAAAGAAACAATTTTTTACAGACAATTGCTCTTTTTGCTCAAAATTAAAGGGTTATGCTAAAATACTCTACACCCCAAGATCCCATGTACCCTCCGAACCAATGCACTCTTGGATTCTAGCGCGGATGATATTGGGATGAAAAAACAAGTGTGAGGTCATCGGAAGTCTGACTTACGCGCGTTATCTGTCACAATGACTATCATATAAAAAACTATGACGGTGAATGCTATCTCATTTTTAGCTCAAATTTCCACTTATGTTCAAATTCGAAATCCACGCCTCGATCTAGGTGAAAAAACATATCAACTCCTTCGTGGCTTTTTTCCACATCTTTGCATCAGATAATTTTTAAATTTCTGATGCTGATTGCTTATTTCACAGATAATTGGTAATCAAATTCTACGTCACCACTTCTGCAATTCTTTCGTTCTACATCATCAAAATGCAACGCTTCGATGATCGTATGCCTATGAATTCAATCTCGTATTCCACGATCCAAACTGAACAGAGTCCAGATTATTCAGGTGAAATAAGCATTTTGAAATAGTTCTGAATATATGTTCTTCAGATGATTCCTGCACTTGTGGACATGATGATATGGCGTTTGGAGATGGATTGGGTTACAAT</canonical>
            <polymorphic>AAAAACACATAAGGGGGGAACCCTTATGTGATTTGTTTCGATTAAAAAAATCATTTTTCGAGTTTTTTCGATCTTCTTAGATCAAACAGACAAACAATCCAAAAAAACAAGAAAAATGAAGAAAATTATATTGAGATTTGGCTCAAAAATACAGAATTTTGATACCGGGTCTTGAAAATTTCCTCAAGCCCGGCCCGGGCTTTGTCGGGCCGGCCCGGAATTTACAAGTATGGGGATCGGGAGGCTCTAAATATCTAATTGGTGAAAATTGCGGAGATAAGGACCCAATATCCAAGGGTACATTTAGTTTTTATAGTTAGGAGCACATTGGTTTTAAGGGTTAATTGGATTTTGTGGTACATATGGGAGGGCAAAAGAAACAATTTTTTACAGACAATTGCTCTTTTTGCTCAAAATTAAAGGGTTATGCTAAAATACTCTACACCCCAAGATCCCATGTACCCTCCGAACCAATGCACTCTTGGATTCTAGCGCGGATRATATTGGGATGAAAAAACAAGTGTGAGGTCATCGGAAGTCTGACTTACGCGCGTTATCTGTCACAATGACTATCATATAAAAAACTATGACGGTGAATGCTATCTCATTTTTAGCTCAAATTTCCACTTATGTTCAAATTCGAAATCCACGCCTCGATCTAGGTGAAAAAACATATCAACTCCTTCGTGGCTTTTTTCCACATCTTTGCATCAGATAATTTTTAAATTTCTGATGCTGATTGCTTATTTCACAGATAATTGGTAATCAAATTCTACGTCACCACTTCTGCAATTCTTTCGTTCTACATCATCAAAATGCAACGCTTCGATGATCGTATGCCTATGAATTCAATCTCGTATTCCACGATCCAAACTGAACAGAGTCCAGATTATTCAGGTGAAATAAGCATTTTGAAATAGTTCTGAATATATGTTCTTCAGATGATTCCTGCACTTGTGGACATGATGATATGGCGTTTGGAGATGGATTGGGTTACAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCTCTAAATATCTAATTGGTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTATATGATAGTCATTGTGACAGA</pcr_primer_p2>
		<pcr_amplicon_size>340</pcr_amplicon_size>
		<canonical_amplicon>GGCTCTAAATATCTAATTGGTGAAAATTGCGGAGATAAGGACCCAATATCCAAGGGTACATTTAGTTTTTATAGTTAGGAGCACATTGGTTTTAAGGGTTAATTGGATTTTGTGGTACATATGGGAGGGCAAAAGAAACAATTTTTTACAGACAATTGCTCTTTTTGCTCAAAATTAAAGGGTTATGCTAAAATACTCTACACCCCAAGATCCCATGTACCCTCCGAACCAATGCACTCTTGGATTCTAGCGCGGATGATATTGGGATGAAAAAACAAGTGTGAGGTCATCGGAAGTCTGACTTACGCGCGTTATCTGTCACAATGACTATCATATAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGCTCTAAATATCTAATTGGTGAAAATTGCGGAGATAAGGACCCAATATCCAAGGGTACATTTAGTTTTTATAGTTAGGAGCACATTGGTTTTAAGGGTTAATTGGATTTTGTGGTACATATGGGAGGGCAAAAGAAACAATTTTTTACAGACAATTGCTCTTTTTGCTCAAAATTAAAGGGTTATGCTAAAATACTCTACACCCCAAGATCCCATGTACCCTCCGAACCAATGCACTCTTGGATTCTAGCGCGGATRATATTGGGATGAAAAAACAAGTGTGAGGTCATCGGAAGTCTGACTTACGCGCGTTATCTGTCACAATGACTATCATATAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11170</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>265225</contig_pos>
        <strand>+</strand>
        <context>TTGGTCGTGG[A/T]GAAAAGAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTTTTCGTGAATGGCAAATGGAAGGTCAGTTTATTGGTTTTGGTCGTGG</left_flank>
        <right_flank>GAAAAGAAGAGAACCGAATACTGGATGAATGGTTCCATTACTCCCTGTAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACATCGACGAAAAGCAGTAAAATACGAGAAACTGAATCCCGAGAATGAAAATAATTTTAGGTTACGGTTGTTGTCGCTGTGGAACTTTCGGCCAAAGCCGACTGCGTTTCTTTCCCACAGCTCCGATTTATTTTTATCAGAACAGTAGTTGTTCCCTTCATTTCCTCATTCATCTTCCTAAAAGACCTTTTTCCAAATTACCGACTTTTTCTCTTTTTTTGACGATGAGAAGGATAGAAAAGAGGAAAAGAGCACATATTTCAATGCTCGTAACGACTTTCGTCTACGAGAGCCGCTTCGATTCCATTTGAGTTCGTAGCGGAAAAAGAAAATTGAGATGGGAAAAAGGAAACGAGCTGTCACCACGGAGTGACAGATGTTCGTCCCCAAATCCATAAATAGGGGTGGGCAATGAAAAAAGAAGTCGTTTCGTGATGGGGACGGGAAATGTTTTCGTGAATGGCAAATGGAAGGTCAGTTTATTGGTTTTGGTCGTGGTGAAAAGAAGAGAACCGAATACTGGATGAATGGTTCCATTACTCCCTGTATCATCTTTTATGAGAAACAGAGATGTCCGGATTCTGAATTCCGTGTTTTTTTATTCCGGATTCCTAAAAAATGTGGGATTCCGAGAAAATTATTTTCGTCGGATTTTCAGCGAATGTTTTAATCTGCAAGAATTCCTGTTACATTCACCGAATTCCGCGTTTTCTTTCGTTCCGCGGAACGTTCCGGATTACGTATTCCGAATTCCGAGGAAATTATTTTATGATGGTTTCCATATTTCGCCTTCCGAGAAGCTAAATTGTAGTGCCGCGTAACACTGCTACAAACCCATTTTCATTGAGCTTTGAGACCATTTTTATTAATTTGTCATTTTCTCAGTTCTTTGTTTCTCTGATGTCTCTCTGACTTTCTCATCACCCGCAAATAAACTTTTTTTTCGAACAACTCTCTTTTTTTTCTTAAGAGAGTTGCGCATCTCAAAACGTGAAACGG</canonical>
            <polymorphic>GACATCGACGAAAAGCAGTAAAATACGAGAAACTGAATCCCGAGAATGAAAATAATTTTAGGTTACGGTTGTTGTCGCTGTGGAACTTTCGGCCAAAGCCGACTGCGTTTCTTTCCCACAGCTCCGATTTATTTTTATCAGAACAGTAGTTGTTCCCTTCATTTCCTCATTCATCTTCCTAAAAGACCTTTTTCCAAATTACCGACTTTTTCTCTTTTTTTGACGATGAGAAGGATAGAAAAGAGGAAAAGAGCACATATTTCAATGCTCGTAACGACTTTCGTCTACGAGAGCCGCTTCGATTCCATTTGAGTTCGTAGCGGAAAAAGAAAATTGAGATGGGAAAAAGGAAACGAGCTGTCACCACGGAGTGACAGATGTTCGTCCCCAAATCCATAAATAGGGGTGGGCAATGAAAAAAGAAGTCGTTTCGTGATGGGGACGGGAAATGTTTTCGTGAATGGCAAATGGAAGGTCAGTTTATTGGTTTTGGTCGTGGWGAAAAGAAGAGAACCGAATACTGGATGAATGGTTCCATTACTCCCTGTATCATCTTTTATGAGAAACAGAGATGTCCGGATTCTGAATTCCGTGTTTTTTTATTCCGGATTCCTAAAAAATGTGGGATTCCGAGAAAATTATTTTCGTCGGATTTTCAGCGAATGTTTTAATCTGCAAGAATTCCTGTTACATTCACCGAATTCCGCGTTTTCTTTCGTTCCGCGGAACGTTCCGGATTACGTATTCCGAATTCCGAGGAAATTATTTTATGATGGTTTCCATATTTCGCCTTCCGAGAAGCTAAATTGTAGTGCCGCGTAACACTGCTACAAACCCATTTTCATTGAGCTTTGAGACCATTTTTATTAATTTGTCATTTTCTCAGTTCTTTGTTTCTCTGATGTCTCTCTGACTTTCTCATCACCCGCAAATAAACTTTTTTTTCGAACAACTCTCTTTTTTTTCTTAAGAGAGTTGCGCATCTCAAAACGTGAAACGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>137 118 108 100 93 82 72 70 39 36 35 30 27 24 10 7 6 3 3</canonical_bands>
                <polymorphic_bands>137 118 108 100 96 82 72 70 39 36 35 30 27 24 10 7 6 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGCGGAAAAAGAAAATTGA</pcr_primer_p1>
		<pcr_primer_p2>TCATAAAAGATGATACAGGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTAGCGGAAAAAGAAAATTGAGATGGGAAAAAGGAAACGAGCTGTCACCACGGAGTGACAGATGTTCGTCCCCAAATCCATAAATAGGGGTGGGCAATGAAAAAAGAAGTCGTTTCGTGATGGGGACGGGAAATGTTTTCGTGAATGGCAAATGGAAGGTCAGTTTATTGGTTTTGGTCGTGGTGAAAAGAAGAGAACCGAATACTGGATGAATGGTTCCATTACTCCCTGTATCATCTTTTATGA</canonical_amplicon>
		<polymorphic_amplicon>GTAGCGGAAAAAGAAAATTGAGATGGGAAAAAGGAAACGAGCTGTCACCACGGAGTGACAGATGTTCGTCCCCAAATCCATAAATAGGGGTGGGCAATGAAAAAAGAAGTCGTTTCGTGATGGGGACGGGAAATGTTTTCGTGAATGGCAAATGGAAGGTCAGTTTATTGGTTTTGGTCGTGGWGAAAAGAAGAGAACCGAATACTGGATGAATGGTTCCATTACTCCCTGTATCATCTTTTATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11171</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>265181</contig_pos>
        <strand>+</strand>
        <context>GAAATGTTTT[C/G]GTGAATGGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTGGGCAATGAAAAAAGAAGTCGTTTCGTGATGGGGACGGGAAATGTTTT</left_flank>
        <right_flank>GTGAATGGCAAATGGAAGGTCAGTTTATTGGTTTTGGTCGTGGTGAAAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTCTCATTTTCGACTTGTTTGGGGAAAAACAGCAGAAAATTCGACATCGACGAAAAGCAGTAAAATACGAGAAACTGAATCCCGAGAATGAAAATAATTTTAGGTTACGGTTGTTGTCGCTGTGGAACTTTCGGCCAAAGCCGACTGCGTTTCTTTCCCACAGCTCCGATTTATTTTTATCAGAACAGTAGTTGTTCCCTTCATTTCCTCATTCATCTTCCTAAAAGACCTTTTTCCAAATTACCGACTTTTTCTCTTTTTTTGACGATGAGAAGGATAGAAAAGAGGAAAAGAGCACATATTTCAATGCTCGTAACGACTTTCGTCTACGAGAGCCGCTTCGATTCCATTTGAGTTCGTAGCGGAAAAAGAAAATTGAGATGGGAAAAAGGAAACGAGCTGTCACCACGGAGTGACAGATGTTCGTCCCCAAATCCATAAATAGGGGTGGGCAATGAAAAAAGAAGTCGTTTCGTGATGGGGACGGGAAATGTTTTCGTGAATGGCAAATGGAAGGTCAGTTTATTGGTTTTGGTCGTGGTGAAAAGAAGAGAACCGAATACTGGATGAATGGTTCCATTACTCCCTGTATCATCTTTTATGAGAAACAGAGATGTCCGGATTCTGAATTCCGTGTTTTTTTATTCCGGATTCCTAAAAAATGTGGGATTCCGAGAAAATTATTTTCGTCGGATTTTCAGCGAATGTTTTAATCTGCAAGAATTCCTGTTACATTCACCGAATTCCGCGTTTTCTTTCGTTCCGCGGAACGTTCCGGATTACGTATTCCGAATTCCGAGGAAATTATTTTATGATGGTTTCCATATTTCGCCTTCCGAGAAGCTAAATTGTAGTGCCGCGTAACACTGCTACAAACCCATTTTCATTGAGCTTTGAGACCATTTTTATTAATTTGTCATTTTCTCAGTTCTTTGTTTCTCTGATGTCTCTCTGACTTTCTCATCACCCGCAAATAAACTTTTTTTTCGAACAACTCT</canonical>
            <polymorphic>AGTTCTCATTTTCGACTTGTTTGGGGAAAAACAGCAGAAAATTCGACATCGACGAAAAGCAGTAAAATACGAGAAACTGAATCCCGAGAATGAAAATAATTTTAGGTTACGGTTGTTGTCGCTGTGGAACTTTCGGCCAAAGCCGACTGCGTTTCTTTCCCACAGCTCCGATTTATTTTTATCAGAACAGTAGTTGTTCCCTTCATTTCCTCATTCATCTTCCTAAAAGACCTTTTTCCAAATTACCGACTTTTTCTCTTTTTTTGACGATGAGAAGGATAGAAAAGAGGAAAAGAGCACATATTTCAATGCTCGTAACGACTTTCGTCTACGAGAGCCGCTTCGATTCCATTTGAGTTCGTAGCGGAAAAAGAAAATTGAGATGGGAAAAAGGAAACGAGCTGTCACCACGGAGTGACAGATGTTCGTCCCCAAATCCATAAATAGGGGTGGGCAATGAAAAAAGAAGTCGTTTCGTGATGGGGACGGGAAATGTTTTSGTGAATGGCAAATGGAAGGTCAGTTTATTGGTTTTGGTCGTGGTGAAAAGAAGAGAACCGAATACTGGATGAATGGTTCCATTACTCCCTGTATCATCTTTTATGAGAAACAGAGATGTCCGGATTCTGAATTCCGTGTTTTTTTATTCCGGATTCCTAAAAAATGTGGGATTCCGAGAAAATTATTTTCGTCGGATTTTCAGCGAATGTTTTAATCTGCAAGAATTCCTGTTACATTCACCGAATTCCGCGTTTTCTTTCGTTCCGCGGAACGTTCCGGATTACGTATTCCGAATTCCGAGGAAATTATTTTATGATGGTTTCCATATTTCGCCTTCCGAGAAGCTAAATTGTAGTGCCGCGTAACACTGCTACAAACCCATTTTCATTGAGCTTTGAGACCATTTTTATTAATTTGTCATTTTCTCAGTTCTTTGTTTCTCTGATGTCTCTCTGACTTTCTCATCACCCGCAAATAAACTTTTTTTTCGAACAACTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>393 223 128 120 83 29 24</canonical_bands>
                <polymorphic_bands>393 223 144 128 83 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGCGGAAAAAGAAAATTGA</pcr_primer_p1>
		<pcr_primer_p2>TCATAAAAGATGATACAGGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTAGCGGAAAAAGAAAATTGAGATGGGAAAAAGGAAACGAGCTGTCACCACGGAGTGACAGATGTTCGTCCCCAAATCCATAAATAGGGGTGGGCAATGAAAAAAGAAGTCGTTTCGTGATGGGGACGGGAAATGTTTTCGTGAATGGCAAATGGAAGGTCAGTTTATTGGTTTTGGTCGTGGTGAAAAGAAGAGAACCGAATACTGGATGAATGGTTCCATTACTCCCTGTATCATCTTTTATGA</canonical_amplicon>
		<polymorphic_amplicon>GTAGCGGAAAAAGAAAATTGAGATGGGAAAAAGGAAACGAGCTGTCACCACGGAGTGACAGATGTTCGTCCCCAAATCCATAAATAGGGGTGGGCAATGAAAAAAGAAGTCGTTTCGTGATGGGGACGGGAAATGTTTTSGTGAATGGCAAATGGAAGGTCAGTTTATTGGTTTTGGTCGTGGTGAAAAGAAGAGAACCGAATACTGGATGAATGGTTCCATTACTCCCTGTATCATCTTTTATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11226</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>423988</contig_pos>
        <strand>+</strand>
        <context>TAAGCCAAAA[A/G]CTTTATAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCTCGTCCTGCCCAACCAGAATACTTCCTTGGAATTCGTTAAGCCAAAA</left_flank>
        <right_flank>CTTTATAAAACGTGTCACCTAACATTCCTCGAGAAAAGAAGTCCCAAAGT</right_flank>
        <qual_score>146</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAATCGAACATTAAGATTTTGCGAGGAAGGAAGGCGACGATATCACTCGTACGATATGTTTAATGCAAAATAGCTAAATTTGAGGAACTGAAAAACATAATTAGAATTATTTATTTCTGTAGAAAACTCAAAAAATATCAACTAAATTGAAACTTCTAGTTCGTAGCTGTCAATTTTTGTATCAAAATCCGTTTAAAATGAGCTACCTTAAGCTGTCTAATAGAATGCCCCCAAACCGTCAACCGTGAGCCAATATATCTCACTTCCAGTAAAAGATATCAAAAAGCATTCAACTGATAGGATGTTTATCATAATATCAAAAATAGTTTTTTAGTTGACCACTTTTAAAAATCTTTCACAGAAAACGAGATAATTGTTTAAACATTGGTTTAAAATGAAGTGTGCCGTTTGTGATTCAGAATGTAAAAAAGTTGAAACTGAATTGAGAGTCTCGTCCTGCCCAACCAGAATACTTCCTTGGAATTCGTTAAGCCAAAAGCTTTATAAAACGTGTCACCTAACATTCCTCGAGAAAAGAAGTCCCAAAGTGGCACCTGCCCTTGTTGTCGGCACCTTGTATCATCGAAGTGTGTGTTCAATCATTTAGTAGACAGATCAGTCTCTTGTCCCATTCTAGTCGCGCTCTCTTTTCATTTTTCTAAATCCTAATCCTTGTTTAAAGTATCGGAGAACATATGAAAGAAAGCGAGAGGTTACGCCATCATTCAATCCACTTCGTCTTTTGAGAAGATGACACGACGACGACTCGAATATTACTGTAGTTATGAAGGATGTTGGCAAACAAGGAGGAGATACAAGTGAAGAAGAAGAAGAGAGGATATGTCCATAAATATATATAGATAGATCATGAGCAAATAGAACTAAAAGAATGCGGGAAAATGAAGGATACTCGCTTCTGGATTTCACGAAGACGATGATTTGGCTTGTCGAGGAATCGGGAATTAGTTATTCTGGATTCGAAATCCGGATGCCGAGAAT</canonical>
            <polymorphic>TCAATCGAACATTAAGATTTTGCGAGGAAGGAAGGCGACGATATCACTCGTACGATATGTTTAATGCAAAATAGCTAAATTTGAGGAACTGAAAAACATAATTAGAATTATTTATTTCTGTAGAAAACTCAAAAAATATCAACTAAATTGAAACTTCTAGTTCGTAGCTGTCAATTTTTGTATCAAAATCCGTTTAAAATGAGCTACCTTAAGCTGTCTAATAGAATGCCCCCAAACCGTCAACCGTGAGCCAATATATCTCACTTCCAGTAAAAGATATCAAAAAGCATTCAACTGATAGGATGTTTATCATAATATCAAAAATAGTTTTTTAGTTGACCACTTTTAAAAATCTTTCACAGAAAACGAGATAATTGTTTAAACATTGGTTTAAAATGAAGTGTGCCGTTTGTGATTCAGAATGTAAAAAAGTTGAAACTGAATTGAGAGTCTCGTCCTGCCCAACCAGAATACTTCCTTGGAATTCGTTAAGCCAAAARCTTTATAAAACGTGTCACCTAACATTCCTCGAGAAAAGAAGTCCCAAAGTGGCACCTGCCCTTGTTGTCGGCACCTTGTATCATCGAAGTGTGTGTTCAATCATTTAGTAGACAGATCAGTCTCTTGTCCCATTCTAGTCGCGCTCTCTTTTCATTTTTCTAAATCCTAATCCTTGTTTAAAGTATCGGAGAACATATGAAAGAAAGCGAGAGGTTACGCCATCATTCAATCCACTTCGTCTTTTGAGAAGATGACACGACGACGACTCGAATATTACTGTAGTTATGAAGGATGTTGGCAAACAAGGAGGAGATACAAGTGAAGAAGAAGAAGAGAGGATATGTCCATAAATATATATAGATAGATCATGAGCAAATAGAACTAAAAGAATGCGGGAAAATGAAGGATACTCGCTTCTGGATTTCACGAAGACGATGATTTGGCTTGTCGAGGAATCGGGAATTAGTTATTCTGGATTCGAAATCCGGATGCCGAGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>500 287 93 74 36 10</canonical_bands>
                <polymorphic_bands>787 93 74 36 10</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>444 243 93 74 56 37 36 10 7</canonical_bands>
                <polymorphic_bands>451 243 93 74 56 37 36 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGTTGAAACTGAATTGAGAG</pcr_primer_p1>
		<pcr_primer_p2>CAAGGATTAGGATTTAGAAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAGTTGAAACTGAATTGAGAGTCTCGTCCTGCCCAACCAGAATACTTCCTTGGAATTCGTTAAGCCAAAAGCTTTATAAAACGTGTCACCTAACATTCCTCGAGAAAAGAAGTCCCAAAGTGGCACCTGCCCTTGTTGTCGGCACCTTGTATCATCGAAGTGTGTGTTCAATCATTTAGTAGACAGATCAGTCTCTTGTCCCATTCTAGTCGCGCTCTCTTTTCATTTTTCTAAATCCTAATCCTTG</canonical_amplicon>
		<polymorphic_amplicon>AAAAGTTGAAACTGAATTGAGAGTCTCGTCCTGCCCAACCAGAATACTTCCTTGGAATTCGTTAAGCCAAAARCTTTATAAAACGTGTCACCTAACATTCCTCGAGAAAAGAAGTCCCAAAGTGGCACCTGCCCTTGTTGTCGGCACCTTGTATCATCGAAGTGTGTGTTCAATCATTTAGTAGACAGATCAGTCTCTTGTCCCATTCTAGTCGCGCTCTCTTTTCATTTTTCTAAATCCTAATCCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11228</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>426832</contig_pos>
        <strand>+</strand>
        <context>AGAKAAATTT[A/G/T]AAAAAARGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G/T</alleles>
        <left_flank>GTTGCCAAAAGTTTGATGGATGCATATAAACTGAAAATATAGATAAATTT</left_flank>
        <right_flank>AAAAAAGGTCTAGATGTAGAAAGCGAATCAAAATATACTTTCAACTTTGA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTGCATGTTCCCCCAGAGTGCTTAGCATCAGAGTTCTGGTCCAGAATCCAAAAAGTTTTTGCGGCAAAACTACCATTCCACTACTCTTCCTCGAAAGTTTTGTGTGTCCCAACTCTTTTCATCAGAAGTCTTGTCATCAGAAGACAATGGTCAAGTATGCCACAACTGGCGGTGCGCGTCTTTTGAGTCCTTTTGAGGTCCTCCTCTTCAACTTGTGCCTTCCAAAAAGAGAGATGAGGAATAAAAGCAGAAGTGGTGATTGTAAAAGGAAAAGAACAAAGTTTCGAGAGAGTGAGGTGCTCCGTGAGCACTGAACAGTTAGATCCAAGAAATCCAACCGGAAGTTATTGAGAGGGAAATATAAGAATAGTGGTGCACCTGAAGATTTGGGTCTATCCCTGGAAGGAAAGTTCGGCAAATACTGACAGAACTGAAAAAATGCTCAACGTTGCCAAAAGTTTGATGGATGCATATAAACTGAAAATATAGATAAATTTGAAAAAAGGTCTAGATGTAGAAAGCGAATCAAAATATACTTTCAACTTTGACCCCACATACCTAGGTTCCTGTGAAAGATATCAAAAAATTGTCAACTAACGAAATATTTTTGATATTATGATAAAAATATTGTCAGTGGACTACTTTTTGATATCTTTTACATGAAATGAGATATATGAGCTCAAACGGGTCGGGGGCGTTCTATTAGAGTGTTTACAGTAACTTGCTCTGATGTTGGCTATCATAATTATCAACGTTGTGATTCAGAAACCATTAAAAAAACGGTCGATGCCTGTCTCTCCAGAAATACTCATCTCTCTATAAGCATCAATTAAACGTAGTCTCCGAAAAAAGAGCATAATGATTAGGTTGAACGGTAGCTTGAAAAGAACCGGGAGGATCTTATCTAGGTCGCACAGTAGCCCACCTGTTCAATATTTGCAAAACAGCTGAAAAAAAACCGAAAAAATCAAAGGGGCGTGGCTTCTTGACATCGCTTT</canonical>
            <polymorphic>TCCTGCATGTTCCCCCAGAGTGCTTAGCATCAGAGTTCTGGTCCAGAATCCAAAAAGTTTTTGCGGCAAAACTACCATTCCACTACTCTTCCTCGAAAGTTTTGTGTGTCCCAACTCTTTTCATCAGAAGTCTTGTCATCAGAAGACAATGGTCAAGTATGCCACAACTGGCGGTGCGCGTCTTTTGAGTCCTTTTGAGGTCCTCCTCTTCAACTTGTGCCTTCCAAAAAGAGAGATGAGGAATAAAAGCAGAAGTGGTGATTGTAAAAGGAAAAGAACAAAGTTTCGAGAGAGTGAGGTGCTCCGTGAGCACTGAACAGTTAGATCCAAGAAATCCAACCGGAAGTTATTGAGAGGGAAATATAAGAATAGTGGTGCACCTGAAGATTTGGGTCTATCCCTGGAAGGAAAGTTCGGCAAATACTGACAGAACTGAAAAAATGCTCAACGTTGCCAAAAGTTTGATGGATGCATATAAACTGAAAATATAGATAAATTTRAAAAAAGGTCTAGATGTAGAAAGCGAATCAAAATATACTTTCAACTTTGACCCCACATACCTAGGTTCCTGTGAAAGATATCAAAAAATTGTCAACTAACGAAATATTTTTGATATTATGATAAAAATATTGTCAGTGGACTACTTTTTGATATCTTTTACATGAAATGAGATATATGAGCTCAAACGGGTCGGGGGCGTTCTATTAGAGTGTTTACAGTAACTTGCTCTGATGTTGGCTATCATAATTATCAACGTTGTGATTCAGAAACCATTAAAAAAACGGTCGATGCCTGTCTCTCCAGAAATACTCATCTCTCTATAAGCATCAATTAAACGTAGTCTCCGAAAAAAGAGCATAATGATTAGGTTGAACGGTAGCTTGAAAAGAACCGGGAGGATCTTATCTAGGTCGCACAGTAGCCCACCTGTTCAATATTTGCAAAACAGCTGAAAAAAAACCGAAAAAATCAAAGGGGCGTGGCTTCTTGACATCGCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAAATACTGACAGAACTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TAGCCAACATCAGAGCAAGT</pcr_primer_p2>
		<pcr_amplicon_size>325</pcr_amplicon_size>
		<canonical_amplicon>GCAAATACTGACAGAACTGAAAAAATGCTCAACGTTGCCAAAAGTTTGATGGATGCATATAAACTGAAAATATAGATAAATTTGAAAAAAGGTCTAGATGTAGAAAGCGAATCAAAATATACTTTCAACTTTGACCCCACATACCTAGGTTCCTGTGAAAGATATCAAAAAATTGTCAACTAACGAAATATTTTTGATATTATGATAAAAATATTGTCAGTGGACTACTTTTTGATATCTTTTACATGAAATGAGATATATGAGCTCAAACGGGTCGGGGGCGTTCTATTAGAGTGTTTACAGTAACTTGCTCTGATGTTGGCTA</canonical_amplicon>
		<polymorphic_amplicon>GCAAATACTGACAGAACTGAAAAAATGCTCAACGTTGCCAAAAGTTTGATGGATGCATATAAACTGAAAATATAGATAAATTTRAAAAAAGGTCTAGATGTAGAAAGCGAATCAAAATATACTTTCAACTTTGACCCCACATACCTAGGTTCCTGTGAAAGATATCAAAAAATTGTCAACTAACGAAATATTTTTGATATTATGATAAAAATATTGTCAGTGGACTACTTTTTGATATCTTTTACATGAAATGAGATATATGAGCTCAAACGGGTCGGGGGCGTTCTATTAGAGTGTTTACAGTAACTTGCTCTGATGTTGGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11229</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>426825</contig_pos>
        <strand>+</strand>
        <context>AAAATATAGA[G/T]AAATTTRAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCTCAACGTTGCCAAAAGTTTGATGGATGCATATAAACTGAAAATATAGA</left_flank>
        <right_flank>AAATTTGAAAAAAGGTCTAGATGTAGAAAGCGAATCAAAATATACTTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGTAATCCTGCATGTTCCCCCAGAGTGCTTAGCATCAGAGTTCTGGTCCAGAATCCAAAAAGTTTTTGCGGCAAAACTACCATTCCACTACTCTTCCTCGAAAGTTTTGTGTGTCCCAACTCTTTTCATCAGAAGTCTTGTCATCAGAAGACAATGGTCAAGTATGCCACAACTGGCGGTGCGCGTCTTTTGAGTCCTTTTGAGGTCCTCCTCTTCAACTTGTGCCTTCCAAAAAGAGAGATGAGGAATAAAAGCAGAAGTGGTGATTGTAAAAGGAAAAGAACAAAGTTTCGAGAGAGTGAGGTGCTCCGTGAGCACTGAACAGTTAGATCCAAGAAATCCAACCGGAAGTTATTGAGAGGGAAATATAAGAATAGTGGTGCACCTGAAGATTTGGGTCTATCCCTGGAAGGAAAGTTCGGCAAATACTGACAGAACTGAAAAAATGCTCAACGTTGCCAAAAGTTTGATGGATGCATATAAACTGAAAATATAGATAAATTTGAAAAAAGGTCTAGATGTAGAAAGCGAATCAAAATATACTTTCAACTTTGACCCCACATACCTAGGTTCCTGTGAAAGATATCAAAAAATTGTCAACTAACGAAATATTTTTGATATTATGATAAAAATATTGTCAGTGGACTACTTTTTGATATCTTTTACATGAAATGAGATATATGAGCTCAAACGGGTCGGGGGCGTTCTATTAGAGTGTTTACAGTAACTTGCTCTGATGTTGGCTATCATAATTATCAACGTTGTGATTCAGAAACCATTAAAAAAACGGTCGATGCCTGTCTCTCCAGAAATACTCATCTCTCTATAAGCATCAATTAAACGTAGTCTCCGAAAAAAGAGCATAATGATTAGGTTGAACGGTAGCTTGAAAAGAACCGGGAGGATCTTATCTAGGTCGCACAGTAGCCCACCTGTTCAATATTTGCAAAACAGCTGAAAAAAAACCGAAAAAATCAAAGGGGCGTGGCTTCTTGACA</canonical>
            <polymorphic>ACAGTAATCCTGCATGTTCCCCCAGAGTGCTTAGCATCAGAGTTCTGGTCCAGAATCCAAAAAGTTTTTGCGGCAAAACTACCATTCCACTACTCTTCCTCGAAAGTTTTGTGTGTCCCAACTCTTTTCATCAGAAGTCTTGTCATCAGAAGACAATGGTCAAGTATGCCACAACTGGCGGTGCGCGTCTTTTGAGTCCTTTTGAGGTCCTCCTCTTCAACTTGTGCCTTCCAAAAAGAGAGATGAGGAATAAAAGCAGAAGTGGTGATTGTAAAAGGAAAAGAACAAAGTTTCGAGAGAGTGAGGTGCTCCGTGAGCACTGAACAGTTAGATCCAAGAAATCCAACCGGAAGTTATTGAGAGGGAAATATAAGAATAGTGGTGCACCTGAAGATTTGGGTCTATCCCTGGAAGGAAAGTTCGGCAAATACTGACAGAACTGAAAAAATGCTCAACGTTGCCAAAAGTTTGATGGATGCATATAAACTGAAAATATAGAKAAATTTGAAAAAAGGTCTAGATGTAGAAAGCGAATCAAAATATACTTTCAACTTTGACCCCACATACCTAGGTTCCTGTGAAAGATATCAAAAAATTGTCAACTAACGAAATATTTTTGATATTATGATAAAAATATTGTCAGTGGACTACTTTTTGATATCTTTTACATGAAATGAGATATATGAGCTCAAACGGGTCGGGGGCGTTCTATTAGAGTGTTTACAGTAACTTGCTCTGATGTTGGCTATCATAATTATCAACGTTGTGATTCAGAAACCATTAAAAAAACGGTCGATGCCTGTCTCTCCAGAAATACTCATCTCTCTATAAGCATCAATTAAACGTAGTCTCCGAAAAAAGAGCATAATGATTAGGTTGAACGGTAGCTTGAAAAGAACCGGGAGGATCTTATCTAGGTCGCACAGTAGCCCACCTGTTCAATATTTGCAAAACAGCTGAAAAAAAACCGAAAAAATCAAAGGGGCGTGGCTTCTTGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAAATACTGACAGAACTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TAGCCAACATCAGAGCAAGT</pcr_primer_p2>
		<pcr_amplicon_size>325</pcr_amplicon_size>
		<canonical_amplicon>GCAAATACTGACAGAACTGAAAAAATGCTCAACGTTGCCAAAAGTTTGATGGATGCATATAAACTGAAAATATAGATAAATTTGAAAAAAGGTCTAGATGTAGAAAGCGAATCAAAATATACTTTCAACTTTGACCCCACATACCTAGGTTCCTGTGAAAGATATCAAAAAATTGTCAACTAACGAAATATTTTTGATATTATGATAAAAATATTGTCAGTGGACTACTTTTTGATATCTTTTACATGAAATGAGATATATGAGCTCAAACGGGTCGGGGGCGTTCTATTAGAGTGTTTACAGTAACTTGCTCTGATGTTGGCTA</canonical_amplicon>
		<polymorphic_amplicon>GCAAATACTGACAGAACTGAAAAAATGCTCAACGTTGCCAAAAGTTTGATGGATGCATATAAACTGAAAATATAGAKAAATTTGAAAAAAGGTCTAGATGTAGAAAGCGAATCAAAATATACTTTCAACTTTGACCCCACATACCTAGGTTCCTGTGAAAGATATCAAAAAATTGTCAACTAACGAAATATTTTTGATATTATGATAAAAATATTGTCAGTGGACTACTTTTTGATATCTTTTACATGAAATGAGATATATGAGCTCAAACGGGTCGGGGGCGTTCTATTAGAGTGTTTACAGTAACTTGCTCTGATGTTGGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11230</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>426803</contig_pos>
        <strand>+</strand>
        <context>TTTGATGGAT[A/G]CATATAAACT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATACTGACAGAACTGAAAAAATGCTCAACGTTGCCAAAAGTTTGATGGAT</left_flank>
        <right_flank>CATATAAACTGAAAATATAGATAAATTTGAAAAAAGGTCTAGATGTAGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAGTGTTGTGTTGATCAGATACAGTAATCCTGCATGTTCCCCCAGAGTGCTTAGCATCAGAGTTCTGGTCCAGAATCCAAAAAGTTTTTGCGGCAAAACTACCATTCCACTACTCTTCCTCGAAAGTTTTGTGTGTCCCAACTCTTTTCATCAGAAGTCTTGTCATCAGAAGACAATGGTCAAGTATGCCACAACTGGCGGTGCGCGTCTTTTGAGTCCTTTTGAGGTCCTCCTCTTCAACTTGTGCCTTCCAAAAAGAGAGATGAGGAATAAAAGCAGAAGTGGTGATTGTAAAAGGAAAAGAACAAAGTTTCGAGAGAGTGAGGTGCTCCGTGAGCACTGAACAGTTAGATCCAAGAAATCCAACCGGAAGTTATTGAGAGGGAAATATAAGAATAGTGGTGCACCTGAAGATTTGGGTCTATCCCTGGAAGGAAAGTTCGGCAAATACTGACAGAACTGAAAAAATGCTCAACGTTGCCAAAAGTTTGATGGATGCATATAAACTGAAAATATAGATAAATTTGAAAAAAGGTCTAGATGTAGAAAGCGAATCAAAATATACTTTCAACTTTGACCCCACATACCTAGGTTCCTGTGAAAGATATCAAAAAATTGTCAACTAACGAAATATTTTTGATATTATGATAAAAATATTGTCAGTGGACTACTTTTTGATATCTTTTACATGAAATGAGATATATGAGCTCAAACGGGTCGGGGGCGTTCTATTAGAGTGTTTACAGTAACTTGCTCTGATGTTGGCTATCATAATTATCAACGTTGTGATTCAGAAACCATTAAAAAAACGGTCGATGCCTGTCTCTCCAGAAATACTCATCTCTCTATAAGCATCAATTAAACGTAGTCTCCGAAAAAAGAGCATAATGATTAGGTTGAACGGTAGCTTGAAAAGAACCGGGAGGATCTTATCTAGGTCGCACAGTAGCCCACCTGTTCAATATTTGCAAAACAGCTGAAAAAAAACCGAAAAAATC</canonical>
            <polymorphic>AATAGTGTTGTGTTGATCAGATACAGTAATCCTGCATGTTCCCCCAGAGTGCTTAGCATCAGAGTTCTGGTCCAGAATCCAAAAAGTTTTTGCGGCAAAACTACCATTCCACTACTCTTCCTCGAAAGTTTTGTGTGTCCCAACTCTTTTCATCAGAAGTCTTGTCATCAGAAGACAATGGTCAAGTATGCCACAACTGGCGGTGCGCGTCTTTTGAGTCCTTTTGAGGTCCTCCTCTTCAACTTGTGCCTTCCAAAAAGAGAGATGAGGAATAAAAGCAGAAGTGGTGATTGTAAAAGGAAAAGAACAAAGTTTCGAGAGAGTGAGGTGCTCCGTGAGCACTGAACAGTTAGATCCAAGAAATCCAACCGGAAGTTATTGAGAGGGAAATATAAGAATAGTGGTGCACCTGAAGATTTGGGTCTATCCCTGGAAGGAAAGTTCGGCAAATACTGACAGAACTGAAAAAATGCTCAACGTTGCCAAAAGTTTGATGGATRCATATAAACTGAAAATATAGATAAATTTGAAAAAAGGTCTAGATGTAGAAAGCGAATCAAAATATACTTTCAACTTTGACCCCACATACCTAGGTTCCTGTGAAAGATATCAAAAAATTGTCAACTAACGAAATATTTTTGATATTATGATAAAAATATTGTCAGTGGACTACTTTTTGATATCTTTTACATGAAATGAGATATATGAGCTCAAACGGGTCGGGGGCGTTCTATTAGAGTGTTTACAGTAACTTGCTCTGATGTTGGCTATCATAATTATCAACGTTGTGATTCAGAAACCATTAAAAAAACGGTCGATGCCTGTCTCTCCAGAAATACTCATCTCTCTATAAGCATCAATTAAACGTAGTCTCCGAAAAAAGAGCATAATGATTAGGTTGAACGGTAGCTTGAAAAGAACCGGGAGGATCTTATCTAGGTCGCACAGTAGCCCACCTGTTCAATATTTGCAAAACAGCTGAAAAAAAACCGAAAAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATGCAT</site>
                <isoschizomers>
                    <enzyme>BfrBI</enzyme>
                    <enzyme>EcoT22I</enzyme>
                    <enzyme>Mph1103I</enzyme>
                    <enzyme>NsiI</enzyme>
                    <enzyme>Ppu10I</enzyme>
                    <enzyme>Zsp2I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>470 372 94 34 30</canonical_bands>
                <polymorphic_bands>564 372 34 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTTCGAGAGAGTGAGGTG</pcr_primer_p1>
		<pcr_primer_p2>TATTTTGATTCGCTTTCTACATC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>AAGTTTCGAGAGAGTGAGGTGCTCCGTGAGCACTGAACAGTTAGATCCAAGAAATCCAACCGGAAGTTATTGAGAGGGAAATATAAGAATAGTGGTGCACCTGAAGATTTGGGTCTATCCCTGGAAGGAAAGTTCGGCAAATACTGACAGAACTGAAAAAATGCTCAACGTTGCCAAAAGTTTGATGGATGCATATAAACTGAAAATATAGATAAATTTGAAAAAAGGTCTAGATGTAGAAAGCGAATCAAAATA</canonical_amplicon>
		<polymorphic_amplicon>AAGTTTCGAGAGAGTGAGGTGCTCCGTGAGCACTGAACAGTTAGATCCAAGAAATCCAACCGGAAGTTATTGAGAGGGAAATATAAGAATAGTGGTGCACCTGAAGATTTGGGTCTATCCCTGGAAGGAAAGTTCGGCAAATACTGACAGAACTGAAAAAATGCTCAACGTTGCCAAAAGTTTGATGGATRCATATAAACTGAAAATATAGATAAATTTGAAAAAAGGTCTAGATGTAGAAAGCGAATCAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11231</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>437773</contig_pos>
        <strand>+</strand>
        <context>GACGTCTTCC[A/C]ATTCCAAAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGTCCGAGATTCCATCCTACCATTTTCAAAAGTCTCTTCGACGTCTTCC</left_flank>
        <right_flank>ATTCCAAAACTTCCAGATACCGTAAACCGGTTAGATTCATTCTCTTTAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACTTTTTCGTATTTTTTTGTATTTAAAAAACAAATCATGCATAACCCCATTAAAAAGAACAAGAAAATATGATGAAAAACGAACAAAAAATTAGGGTAGGCGCATTTGCCGTCGTTTGCGCACTTTCCGTTTCTTGCTGGCGTGTTTCTAGTGTCGGTCCAAAGTCCATCATTCGGTCCGGTGTGGCCCGTTATCTCTCACTTCTCATATCATTTGTGTCTTTTCATAGAACACAGTTAGTTTTTTCTTCCATATTCTGAACTAAAAGTTTATCTTTTCGTGATTTTCATTTGTGTCTCCTATTTATCATTTGTTGTCGTTTAGATTTTCAGTCTTACTTTGAGTAAATCTTGTTTACAGATGCTTCGCTCATCAAACTTGTGCAGATCGATCGCGGCGAGTCGTGGTAAACATGCGTTGACTGGTGATGATTATCAGTACTTGGAGAAGTCCGAGATTCCATCCTACCATTTTCAAAAGTCTCTTCGACGTCTTCCCATTCCAAAACTTCCAGATACCGTAAACCGGTTAGATTCATTCTCTTTAAAAATGGCTAATGTGTCCCTACCAGATTAATTTTCAGCTACCTTACATCATCGAAAGCGGTTTTATCCTCAGAGGCCTATGCAAAAACCGAAGCATCAATCAGATCCTTCGAAACAAATGAAGGCCCAAAGCTTCAAGAAGCTCTTCTGGAATATGATAAAGCCCATCGCGATACCAGCTATATCTCTGAGCCATGGTTTGATATGTACTTGAGAGCTAGAGTTCCAGTAGCTGTGAACTACAATCCATTCATGATGTATGCCCCTGATCCGGACCCGAAATTCAACGACCAGGTATTTATATTTTTGGCTCTGAAATAACATCTAGAAACTGATTGTGAGCTTTTTTGTAATTTTTCAGTAAGATATTTCCTAATAGCAAACGTAGTCTATCCGTCGAGGACTACGTGTAGTCGTAAAGTACAACTAGGGAAAATTACAAGGTGTAGCCAG</canonical>
            <polymorphic>GTACTTTTTCGTATTTTTTTGTATTTAAAAAACAAATCATGCATAACCCCATTAAAAAGAACAAGAAAATATGATGAAAAACGAACAAAAAATTAGGGTAGGCGCATTTGCCGTCGTTTGCGCACTTTCCGTTTCTTGCTGGCGTGTTTCTAGTGTCGGTCCAAAGTCCATCATTCGGTCCGGTGTGGCCCGTTATCTCTCACTTCTCATATCATTTGTGTCTTTTCATAGAACACAGTTAGTTTTTTCTTCCATATTCTGAACTAAAAGTTTATCTTTTCGTGATTTTCATTTGTGTCTCCTATTTATCATTTGTTGTCGTTTAGATTTTCAGTCTTACTTTGAGTAAATCTTGTTTACAGATGCTTCGCTCATCAAACTTGTGCAGATCGATCGCGGCGAGTCGTGGTAAACATGCGTTGACTGGTGATGATTATCAGTACTTGGAGAAGTCCGAGATTCCATCCTACCATTTTCAAAAGTCTCTTCGACGTCTTCCMATTCCAAAACTTCCAGATACCGTAAACCGGTTAGATTCATTCTCTTTAAAAATGGCTAATGTGTCCCTACCAGATTAATTTTCAGCTACCTTACATCATCGAAAGCGGTTTTATCCTCAGAGGCCTATGCAAAAACCGAAGCATCAATCAGATCCTTCGAAACAAATGAAGGCCCAAAGCTTCAAGAAGCTCTTCTGGAATATGATAAAGCCCATCGCGATACCAGCTATATCTCTGAGCCATGGTTTGATATGTACTTGAGAGCTAGAGTTCCAGTAGCTGTGAACTACAATCCATTCATGATGTATGCCCCTGATCCGGACCCGAAATTCAACGACCAGGTATTTATATTTTTGGCTCTGAAATAACATCTAGAAACTGATTGTGAGCTTTTTTGTAATTTTTCAGTAAGATATTTCCTAATAGCAAACGTAGTCTATCCGTCGAGGACTACGTGTAGTCGTAAAGTACAACTAGGGAAAATTACAAGGTGTAGCCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTTGTTGTCGTTTAGATTTT</pcr_primer_p1>
		<pcr_primer_p2>TAGCCATTTTTAAAGAGAATGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCATTTGTTGTCGTTTAGATTTTCAGTCTTACTTTGAGTAAATCTTGTTTACAGATGCTTCGCTCATCAAACTTGTGCAGATCGATCGCGGCGAGTCGTGGTAAACATGCGTTGACTGGTGATGATTATCAGTACTTGGAGAAGTCCGAGATTCCATCCTACCATTTTCAAAAGTCTCTTCGACGTCTTCCCATTCCAAAACTTCCAGATACCGTAAACCGGTTAGATTCATTCTCTTTAAAAATGGCTA</canonical_amplicon>
		<polymorphic_amplicon>TCATTTGTTGTCGTTTAGATTTTCAGTCTTACTTTGAGTAAATCTTGTTTACAGATGCTTCGCTCATCAAACTTGTGCAGATCGATCGCGGCGAGTCGTGGTAAACATGCGTTGACTGGTGATGATTATCAGTACTTGGAGAAGTCCGAGATTCCATCCTACCATTTTCAAAAGTCTCTTCGACGTCTTCCMATTCCAAAACTTCCAGATACCGTAAACCGGTTAGATTCATTCTCTTTAAAAATGGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11232</snp_id>
        <super_contig>c005600499.Contig1</super_contig>
        <contig_pos>132033</contig_pos>
        <strand>+</strand>
        <context>TTTAGACGAT[A/C]CARGGATTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCTCTGGCGTTGTTTCAACTAGTTTTATAGAGGTTTCTTTTAGACGAT</left_flank>
        <right_flank>CAGGGATTAACAATTATAATTAACAACAAATATTTTTAGTATCAGAAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCCTTCAGGAGATATCGAAAATCTGTCAACTAATAAAATGTTTGGCATAATTTCATCAACATTTTATCAGTTGACAGATTTTTGATATCTCTAATAGGAGCCGAGTGTGGGCGCCTAAACAATGAAATGATGAGATACGCAGAGAACCGAGAGTGTCTCGCTTCTCTGGCGTTGTTTCAACTGGTTCTAAAGATGGGGAACAGATAGCAAACTTTATAATGAGAAATTATAGTTCACAAAAAATATGTGAAGTATCAGAAACTGGAATTTTTTAAATTCGATGGGCAAACCTTTAAATGATACCAAAAATCTGCTAACTAATAAAATGTTTGTTATAATATCATCAACATTTTATTAGTTGACAGATTTTCGATATCTGCAATAGGAACCGAGATAATTGAGCTCAAAGTGGGTGCGCACAAAAAAAAATGAAACGAGGGAGTTTCGTTTCTCTGGCGTTGTTTCAACTAGTTTTATAGAGGTTTCTTTTAGACGATACAGGGATTAACAATTATAATTAACAACAAATATTTTTAGTATCAGAAACTGGGAAATTTTTTGAATTTGATTGGTAAAAATTTCATAATTTCAAACTACATTGAAATATCGAAAATTCCAGTTTCAACAATTTGATAATATTTGATTAATGGGTTCCAACCTTTAATCATATAACCAGATATACTCACTTTACTCGACGAAAACCCGGACTCGATACTCCTTGTGGACCCATATGACGGTTGTTTCTTCATCATCAGAATTCCCGACGTCTTCTTCTTCTGCTGCTTCTTCTGGTCCTCTTCAGCCTCTTCTTCTATCCGAATCACCTCATCAAACTGTCTCATCACATCTCGCTGCTCCGCATCCAGCCAATCACTCATTCTTGTCCTCTTAATTCGAATCGATTCAGTTTTCCAATCGAGTTTCGGCACGGCAACCAACACGTGGCTTCCAGATGGTACAACGGCGATTAATTTTTTGTTATCTGATGGTGAGATAGT</canonical>
            <polymorphic>GTTCCTTCAGGAGATATCGAAAATCTGTCAACTAATAAAATGTTTGGCATAATTTCATCAACATTTTATCAGTTGACAGATTTTTGATATCTCTAATAGGAGCCGAGTGTGGGCGCCTAAACAATGAAATGATGAGATACGCAGAGAACCGAGAGTGTCTCGCTTCTCTGGCGTTGTTTCAACTGGTTCTAAAGATGGGGAACAGATAGCAAACTTTATAATGAGAAATTATAGTTCACAAAAAATATGTGAAGTATCAGAAACTGGAATTTTTTAAATTCGATGGGCAAACCTTTAAATGATACCAAAAATCTGCTAACTAATAAAATGTTTGTTATAATATCATCAACATTTTATTAGTTGACAGATTTTCGATATCTGCAATAGGAACCGAGATAATTGAGCTCAAAGTGGGTGCGCACAAAAAAAAATGAAACGAGGGAGTTTCGTTTCTCTGGCGTTGTTTCAACTAGTTTTATAGAGGTTTCTTTTAGACGATMCAGGGATTAACAATTATAATTAACAACAAATATTTTTAGTATCAGAAACTGGGAAATTTTTTGAATTTGATTGGTAAAAATTTCATAATTTCAAACTACATTGAAATATCGAAAATTCCAGTTTCAACAATTTGATAATATTTGATTAATGGGTTCCAACCTTTAATCATATAACCAGATATACTCACTTTACTCGACGAAAACCCGGACTCGATACTCCTTGTGGACCCATATGACGGTTGTTTCTTCATCATCAGAATTCCCGACGTCTTCTTCTTCTGCTGCTTCTTCTGGTCCTCTTCAGCCTCTTCTTCTATCCGAATCACCTCATCAAACTGTCTCATCACATCTCGCTGCTCCGCATCCAGCCAATCACTCATTCTTGTCCTCTTAATTCGAATCGATTCAGTTTTCCAATCGAGTTTCGGCACGGCAACCAACACGTGGCTTCCAGATGGTACAACGGCGATTAATTTTTTGTTATCTGATGGTGAGATAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGAAACGAGGGAGTT</pcr_primer_p1>
		<pcr_primer_p2>GTTGGAACCCATTAATCAAATA</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGAAACGAGGGAGTTTCGTTTCTCTGGCGTTGTTTCAACTAGTTTTATAGAGGTTTCTTTTAGACGATACAGGGATTAACAATTATAATTAACAACAAATATTTTTAGTATCAGAAACTGGGAAATTTTTTGAATTTGATTGGTAAAAATTTCATAATTTCAAACTACATTGAAATATCGAAAATTCCAGTTTCAACAATTTGATAATATTTGATTAATGGGTTCCAAC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGAAACGAGGGAGTTTCGTTTCTCTGGCGTTGTTTCAACTAGTTTTATAGAGGTTTCTTTTAGACGATMCAGGGATTAACAATTATAATTAACAACAAATATTTTTAGTATCAGAAACTGGGAAATTTTTTGAATTTGATTGGTAAAAATTTCATAATTTCAAACTACATTGAAATATCGAAAATTCCAGTTTCAACAATTTGATAATATTTGATTAATGGGTTCCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11280</snp_id>
        <super_contig>c005600499.Contig1</super_contig>
        <contig_pos>133283</contig_pos>
        <strand>+</strand>
        <context>ATTTTTTTCC[A/T]TTTTGGTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGACCTCCCCTATTGTGTCGTCTTTAAGAAATGGAGAACCATTTTTTTCC</left_flank>
        <right_flank>TTTTGGTTCGAGAAGAATAGAATGTGAGAATTGAGAAAAGGGAAGAAGAA</right_flank>
        <qual_score>149</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTACTTGTCTCGCTGTCTGCGTCTCACGGAAAGTACACACTCGACGGATTGTCTCGATGTCTGCGTCTCGTCTGATCAACATCTCGTCTGATTTGTCATCGGTAATCCGTTGTGGTAAACGTGCGTAGATCAGCCAGAAATAGTAGACAAACGATGTATAAAGGTAGGTGATCCAAGTTATGATTGGCGATGGTTGGTGGCTAGTTTCGTTTCGATTTGGATTCGGATTATTAGTATTCGAATCCATTTCAGAAGACTTCAGAAGACGTTACTATCTCTAGGAATACTTTAACTTCTACAGAGTGCAAAAATGATGGAAAACTGACTTATTGTTTGTCAAGATATATAACTTTTCTCTATGCATAGTTTATTATGGGGGTTTTCTTCGCGCGAGCCCCATAAAAGACCCCTCTCTTCATATTTTTATCATCGCTTACATATGACAAATAGACCTCCCCTATTGTGTCGTCTTTAAGAAATGGAGAACCATTTTTTTCCTTTTTGGTTCGAGAAGAATAGAATGTGAGAATTGAGAAAAGGGAAGAAGAAGTGGAGGAATTCCGAGGAAAAAAAAAGTACAAGTGGACTATTGGTTGATCACTAATGTTCTTTTTCTTGCAAAGAAGACCCGTTAGTATGGAGAACGCAGATGTTCTTGGAATATAATGGGTCACTGAATTTTATGAGGTTGAGCAGCTGGGGATAGTGAAAATGAGGACCAATTGGATAATCTATATCGCATTGAAATTTGACATCGTTTGTACCTCTTCAGGAAAACATGAAACAGTAAAAGCTCTACATGCACTTTGCGCTCAATTATCTCGGTTCCTATGAAAGACATAAAGGATCTGCCCACTAATAAAATGTTGGCGATATTATGGCAACCGTTTTATCAGTTTACAACTTTTTGATACATCTTATGGGAACCGAGTTAATTGAGCTAAAACTGTAGACCAATTTTTATGAAACTTGTACAAATCGGTCTGAAATTTTTTGCCA</canonical>
            <polymorphic>GTTACTTGTCTCGCTGTCTGCGTCTCACGGAAAGTACACACTCGACGGATTGTCTCGATGTCTGCGTCTCGTCTGATCAACATCTCGTCTGATTTGTCATCGGTAATCCGTTGTGGTAAACGTGCGTAGATCAGCCAGAAATAGTAGACAAACGATGTATAAAGGTAGGTGATCCAAGTTATGATTGGCGATGGTTGGTGGCTAGTTTCGTTTCGATTTGGATTCGGATTATTAGTATTCGAATCCATTTCAGAAGACTTCAGAAGACGTTACTATCTCTAGGAATACTTTAACTTCTACAGAGTGCAAAAATGATGGAAAACTGACTTATTGTTTGTCAAGATATATAACTTTTCTCTATGCATAGTTTATTATGGGGGTTTTCTTCGCGCGAGCCCCATAAAAGACCCCTCTCTTCATATTTTTATCATCGCTTACATATGACAAATAGACCTCCCCTATTGTGTCGTCTTTAAGAAATGGAGAACCATTTTTTTCCWTTTTGGTTCGAGAAGAATAGAATGTGAGAATTGAGAAAAGGGAAGAAGAAGTGGAGGAATTCCGAGGAAAAAAAAAGTACAAGTGGACTATTGGTTGATCACTAATGTTCTTTTTCTTGCAAAGAAGACCCGTTAGTATGGAGAACGCAGATGTTCTTGGAATATAATGGGTCACTGAATTTTATGAGGTTGAGCAGCTGGGGATAGTGAAAATGAGGACCAATTGGATAATCTATATCGCATTGAAATTTGACATCGTTTGTACCTCTTCAGGAAAACATGAAACAGTAAAAGCTCTACATGCACTTTGCGCTCAATTATCTCGGTTCCTATGAAAGACATAAAGGATCTGCCCACTAATAAAATGTTGGCGATATTATGGCAACCGTTTTATCAGTTTACAACTTTTTGATACATCTTATGGGAACCGAGTTAATTGAGCTAAAACTGTAGACCAATTTTTATGAAACTTGTACAAATCGGTCTGAAATTTTTTGCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCATCGCTTACATATGACAAA</pcr_primer_p1>
		<pcr_primer_p2>CCATTATATTCCAAGAACATCTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TATCATCGCTTACATATGACAAATAGACCTCCCCTATTGTGTCGTCTTTAAGAAATGGAGAACCATTTTTTTCCTTTTTGGTTCGAGAAGAATAGAATGTGAGAATTGAGAAAAGGGAAGAAGAAGTGGAGGAATTCCGAGGAAAAAAAAAGTACAAGTGGACTATTGGTTGATCACTAATGTTCTTTTTCTTGCAAAGAAGACCCGTTAGTATGGAGAACGCAGATGTTCTTGGAATATAATGG</canonical_amplicon>
		<polymorphic_amplicon>TATCATCGCTTACATATGACAAATAGACCTCCCCTATTGTGTCGTCTTTAAGAAATGGAGAACCATTTTTTTCCWTTTTGGTTCGAGAAGAATAGAATGTGAGAATTGAGAAAAGGGAAGAAGAAGTGGAGGAATTCCGAGGAAAAAAAAAGTACAAGTGGACTATTGGTTGATCACTAATGTTCTTTTTCTTGCAAAGAAGACCCGTTAGTATGGAGAACGCAGATGTTCTTGGAATATAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11282</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>18481</contig_pos>
        <strand>+</strand>
        <context>CATTAGCCAG[C/T]TTTTTTTCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTTAAAATGTGTATTTCCTGATTTTCGTCAATTATTGGTCATTAGCCAG</left_flank>
        <right_flank>TTTTTTTCTAAATTCGACACTGGTTTTCAACATTTCAACTCGATTTTCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGGCAATTTTTTTTTACAAAGTCGGAACGAACGTCCCATTGATTTTTTTTGCTAGATTAGTTTCTTTTTCAAAATGAGCTGAAGAAGAAAGTGTTGTGAATAATAATGAAAAGTTGATCCAAAATATAAAAAAAATTGTTAGGCTCCGCCCATTTTGATATGATAAGTGATGTCAGAAAGGTTGAGGAGCAAAGGAAATTAGATTTGTGTCCGTCCGGAAATTAATAAAATTGGTATGGACATTTTTCATTTTGTACTTAGTCCGAAAATAGATTTTTGGGTGGAGCTCTGGTTGTTATTGAGAGTGAGATTGATAGTGAAAGAGAAATGGGTAGATAGTAGAGTGATGTTTGAAGCCAGATTTACGCTGAATCGTCAAGGTTAATCCTTTGAATCAAATTCTTACCTTATTAGTTAAATTATGTGTTGTTACAAATAAATTTAGTTAGGTTAAAATGTGTATTTCCTGATTTTCGTCAATTATTGGTCATTAGCCAGCTTTTTTTCTAAATTCGACACTGGTTTTCAACATTTCAACTCGATTTTCTCACAATTTTCGGCACGAATACGTGTGCAAAATAGTATCCGAATATTTTGGCATTCTTGGAGACCGTCGTTGAAATGCCCCAGGTTTCGGAAGAGGTCGCATTGGATACGCATCCTCAGATGAGACATCTGATGATGACGCCCACGGCATCTGGAGATTCAAAATGATGTGACGAAATTCTGAGAAGAGTACAAAATAGAGGATCATTGAGGTTTTCTAGAGATACAAAAGTTTGTTATTCTCTGATGAGAAATATTGAAATTCAGAGTTTGGTGGTGGCAAGTGGTCAAAACAAAACTGAAAATACAAAAAATTGAATTCGGTGATTTTAGGGAAAAATGAATAGCAAAAGGAAGGTTCTTGATATGAGGGACTTGCAAAATTTAGAAAAAAAAGAAGCTCACATTTCCGTAAATCAGTAATTTCTAAATTTTATGAACTCAGTCATGAAA</canonical>
            <polymorphic>TGGGCAATTTTTTTTTACAAAGTCGGAACGAACGTCCCATTGATTTTTTTTGCTAGATTAGTTTCTTTTTCAAAATGAGCTGAAGAAGAAAGTGTTGTGAATAATAATGAAAAGTTGATCCAAAATATAAAAAAAATTGTTAGGCTCCGCCCATTTTGATATGATAAGTGATGTCAGAAAGGTTGAGGAGCAAAGGAAATTAGATTTGTGTCCGTCCGGAAATTAATAAAATTGGTATGGACATTTTTCATTTTGTACTTAGTCCGAAAATAGATTTTTGGGTGGAGCTCTGGTTGTTATTGAGAGTGAGATTGATAGTGAAAGAGAAATGGGTAGATAGTAGAGTGATGTTTGAAGCCAGATTTACGCTGAATCGTCAAGGTTAATCCTTTGAATCAAATTCTTACCTTATTAGTTAAATTATGTGTTGTTACAAATAAATTTAGTTAGGTTAAAATGTGTATTTCCTGATTTTCGTCAATTATTGGTCATTAGCCAGYTTTTTTTCTAAATTCGACACTGGTTTTCAACATTTCAACTCGATTTTCTCACAATTTTCGGCACGAATACGTGTGCAAAATAGTATCCGAATATTTTGGCATTCTTGGAGACCGTCGTTGAAATGCCCCAGGTTTCGGAAGAGGTCGCATTGGATACGCATCCTCAGATGAGACATCTGATGATGACGCCCACGGCATCTGGAGATTCAAAATGATGTGACGAAATTCTGAGAAGAGTACAAAATAGAGGATCATTGAGGTTTTCTAGAGATACAAAAGTTTGTTATTCTCTGATGAGAAATATTGAAATTCAGAGTTTGGTGGTGGCAAGTGGTCAAAACAAAACTGAAAATACAAAAAATTGAATTCGGTGATTTTAGGGAAAAATGAATAGCAAAAGGAAGGTTCTTGATATGAGGGACTTGCAAAATTTAGAAAAAAAAGAAGCTCACATTTCCGTAAATCAGTAATTTCTAAATTTTATGAACTCAGTCATGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>448 212 208 79 53</canonical_bands>
                <polymorphic_bands>660 208 79 53</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>448 143 138 79 70 65 53 4</canonical_bands>
                <polymorphic_bands>452 143 138 79 70 65 53</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGAGATTGATAGTGAAAGAGAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGTGAGAAAATCGAGTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGAGATTGATAGTGAAAGAGAAATGGGTAGATAGTAGAGTGATGTTTGAAGCCAGATTTACGCTGAATCGTCAAGGTTAATCCTTTGAATCAAATTCTTACCTTATTAGTTAAATTATGTGTTGTTACAAATAAATTTAGTTAGGTTAAAATGTGTATTTCCTGATTTTCGTCAATTATTGGTCATTAGCCAGCTTTTTTTCTAAATTCGACACTGGTTTTCAACATTTCAACTCGATTTTCTCACAAT</canonical_amplicon>
		<polymorphic_amplicon>GTGAGATTGATAGTGAAAGAGAAATGGGTAGATAGTAGAGTGATGTTTGAAGCCAGATTTACGCTGAATCGTCAAGGTTAATCCTTTGAATCAAATTCTTACCTTATTAGTTAAATTATGTGTTGTTACAAATAAATTTAGTTAGGTTAAAATGTGTATTTCCTGATTTTCGTCAATTATTGGTCATTAGCCAGYTTTTTTTCTAAATTCGACACTGGTTTTCAACATTTCAACTCGATTTTCTCACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11283</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>18542</contig_pos>
        <strand>+</strand>
        <context>ACAATTTTCG[A/G]CACGAATACG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTCGACACTGGTTTTCAACATTTCAACTCGATTTTCTCACAATTTTCG</left_flank>
        <right_flank>CACGAATACGTGTGCAAAATAGTATCCGAATATTTTGGCATTCTTGGAGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTTTTTCAAAATGAGCTGAAGAAGAAAGTGTTGTGAATAATAATGAAAAGTTGATCCAAAATATAAAAAAAATTGTTAGGCTCCGCCCATTTTGATATGATAAGTGATGTCAGAAAGGTTGAGGAGCAAAGGAAATTAGATTTGTGTCCGTCCGGAAATTAATAAAATTGGTATGGACATTTTTCATTTTGTACTTAGTCCGAAAATAGATTTTTGGGTGGAGCTCTGGTTGTTATTGAGAGTGAGATTGATAGTGAAAGAGAAATGGGTAGATAGTAGAGTGATGTTTGAAGCCAGATTTACGCTGAATCGTCAAGGTTAATCCTTTGAATCAAATTCTTACCTTATTAGTTAAATTATGTGTTGTTACAAATAAATTTAGTTAGGTTAAAATGTGTATTTCCTGATTTTCGTCAATTATTGGTCATTAGCCAGCTTTTTTTCTAAATTCGACACTGGTTTTCAACATTTCAACTCGATTTTCTCACAATTTTCGGCACGAATACGTGTGCAAAATAGTATCCGAATATTTTGGCATTCTTGGAGACCGTCGTTGAAATGCCCCAGGTTTCGGAAGAGGTCGCATTGGATACGCATCCTCAGATGAGACATCTGATGATGACGCCCACGGCATCTGGAGATTCAAAATGATGTGACGAAATTCTGAGAAGAGTACAAAATAGAGGATCATTGAGGTTTTCTAGAGATACAAAAGTTTGTTATTCTCTGATGAGAAATATTGAAATTCAGAGTTTGGTGGTGGCAAGTGGTCAAAACAAAACTGAAAATACAAAAAATTGAATTCGGTGATTTTAGGGAAAAATGAATAGCAAAAGGAAGGTTCTTGATATGAGGGACTTGCAAAATTTAGAAAAAAAAGAAGCTCACATTTCCGTAAATCAGTAATTTCTAAATTTTATGAACTCAGTCATGAAATCTAAATGTTCAGAAAACTTGGAATTGAGAAGTTTGAATCAATCAGATACTCCCAAAAGCA</canonical>
            <polymorphic>TTTCTTTTTCAAAATGAGCTGAAGAAGAAAGTGTTGTGAATAATAATGAAAAGTTGATCCAAAATATAAAAAAAATTGTTAGGCTCCGCCCATTTTGATATGATAAGTGATGTCAGAAAGGTTGAGGAGCAAAGGAAATTAGATTTGTGTCCGTCCGGAAATTAATAAAATTGGTATGGACATTTTTCATTTTGTACTTAGTCCGAAAATAGATTTTTGGGTGGAGCTCTGGTTGTTATTGAGAGTGAGATTGATAGTGAAAGAGAAATGGGTAGATAGTAGAGTGATGTTTGAAGCCAGATTTACGCTGAATCGTCAAGGTTAATCCTTTGAATCAAATTCTTACCTTATTAGTTAAATTATGTGTTGTTACAAATAAATTTAGTTAGGTTAAAATGTGTATTTCCTGATTTTCGTCAATTATTGGTCATTAGCCAGCTTTTTTTCTAAATTCGACACTGGTTTTCAACATTTCAACTCGATTTTCTCACAATTTTCGRCACGAATACGTGTGCAAAATAGTATCCGAATATTTTGGCATTCTTGGAGACCGTCGTTGAAATGCCCCAGGTTTCGGAAGAGGTCGCATTGGATACGCATCCTCAGATGAGACATCTGATGATGACGCCCACGGCATCTGGAGATTCAAAATGATGTGACGAAATTCTGAGAAGAGTACAAAATAGAGGATCATTGAGGTTTTCTAGAGATACAAAAGTTTGTTATTCTCTGATGAGAAATATTGAAATTCAGAGTTTGGTGGTGGCAAGTGGTCAAAACAAAACTGAAAATACAAAAAATTGAATTCGGTGATTTTAGGGAAAAATGAATAGCAAAAGGAAGGTTCTTGATATGAGGGACTTGCAAAATTTAGAAAAAAAAGAAGCTCACATTTCCGTAAATCAGTAATTTCTAAATTTTATGAACTCAGTCATGAAATCTAAATGTTCAGAAAACTTGGAATTGAGAAGTTTGAATCAATCAGATACTCCCAAAAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCGTCAATTATTGGTCATTAG</pcr_primer_p1>
		<pcr_primer_p2>CGTCACATCATTTTGAATCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCGTCAATTATTGGTCATTAGCCAGCTTTTTTTCTAAATTCGACACTGGTTTTCAACATTTCAACTCGATTTTCTCACAATTTTCGGCACGAATACGTGTGCAAAATAGTATCCGAATATTTTGGCATTCTTGGAGACCGTCGTTGAAATGCCCCAGGTTTCGGAAGAGGTCGCATTGGATACGCATCCTCAGATGAGACATCTGATGATGACGCCCACGGCATCTGGAGATTCAAAATGATGTGACG</canonical_amplicon>
		<polymorphic_amplicon>TTTCGTCAATTATTGGTCATTAGCCAGCTTTTTTTCTAAATTCGACACTGGTTTTCAACATTTCAACTCGATTTTCTCACAATTTTCGRCACGAATACGTGTGCAAAATAGTATCCGAATATTTTGGCATTCTTGGAGACCGTCGTTGAAATGCCCCAGGTTTCGGAAGAGGTCGCATTGGATACGCATCCTCAGATGAGACATCTGATGATGACGCCCACGGCATCTGGAGATTCAAAATGATGTGACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11284</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>18557</contig_pos>
        <strand>+</strand>
        <context>AATACGTGTG[C/T]AAAATAGTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAACATTTCAACTCGATTTTCTCACAATTTTCGGCACGAATACGTGTG</left_flank>
        <right_flank>AAAATAGTATCCGAATATTTTGGCATTCTTGGAGACCGTCGTTGAAATGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGCTGAAGAAGAAAGTGTTGTGAATAATAATGAAAAGTTGATCCAAAATATAAAAAAAATTGTTAGGCTCCGCCCATTTTGATATGATAAGTGATGTCAGAAAGGTTGAGGAGCAAAGGAAATTAGATTTGTGTCCGTCCGGAAATTAATAAAATTGGTATGGACATTTTTCATTTTGTACTTAGTCCGAAAATAGATTTTTGGGTGGAGCTCTGGTTGTTATTGAGAGTGAGATTGATAGTGAAAGAGAAATGGGTAGATAGTAGAGTGATGTTTGAAGCCAGATTTACGCTGAATCGTCAAGGTTAATCCTTTGAATCAAATTCTTACCTTATTAGTTAAATTATGTGTTGTTACAAATAAATTTAGTTAGGTTAAAATGTGTATTTCCTGATTTTCGTCAATTATTGGTCATTAGCCAGCTTTTTTTCTAAATTCGACACTGGTTTTCAACATTTCAACTCGATTTTCTCACAATTTTCGGCACGAATACGTGTGCAAAATAGTATCCGAATATTTTGGCATTCTTGGAGACCGTCGTTGAAATGCCCCAGGTTTCGGAAGAGGTCGCATTGGATACGCATCCTCAGATGAGACATCTGATGATGACGCCCACGGCATCTGGAGATTCAAAATGATGTGACGAAATTCTGAGAAGAGTACAAAATAGAGGATCATTGAGGTTTTCTAGAGATACAAAAGTTTGTTATTCTCTGATGAGAAATATTGAAATTCAGAGTTTGGTGGTGGCAAGTGGTCAAAACAAAACTGAAAATACAAAAAATTGAATTCGGTGATTTTAGGGAAAAATGAATAGCAAAAGGAAGGTTCTTGATATGAGGGACTTGCAAAATTTAGAAAAAAAAGAAGCTCACATTTCCGTAAATCAGTAATTTCTAAATTTTATGAACTCAGTCATGAAATCTAAATGTTCAGAAAACTTGGAATTGAGAAGTTTGAATCAATCAGATACTCCCAAAAGCAAAAAATGTCAGAAAT</canonical>
            <polymorphic>GAGCTGAAGAAGAAAGTGTTGTGAATAATAATGAAAAGTTGATCCAAAATATAAAAAAAATTGTTAGGCTCCGCCCATTTTGATATGATAAGTGATGTCAGAAAGGTTGAGGAGCAAAGGAAATTAGATTTGTGTCCGTCCGGAAATTAATAAAATTGGTATGGACATTTTTCATTTTGTACTTAGTCCGAAAATAGATTTTTGGGTGGAGCTCTGGTTGTTATTGAGAGTGAGATTGATAGTGAAAGAGAAATGGGTAGATAGTAGAGTGATGTTTGAAGCCAGATTTACGCTGAATCGTCAAGGTTAATCCTTTGAATCAAATTCTTACCTTATTAGTTAAATTATGTGTTGTTACAAATAAATTTAGTTAGGTTAAAATGTGTATTTCCTGATTTTCGTCAATTATTGGTCATTAGCCAGCTTTTTTTCTAAATTCGACACTGGTTTTCAACATTTCAACTCGATTTTCTCACAATTTTCGGCACGAATACGTGTGYAAAATAGTATCCGAATATTTTGGCATTCTTGGAGACCGTCGTTGAAATGCCCCAGGTTTCGGAAGAGGTCGCATTGGATACGCATCCTCAGATGAGACATCTGATGATGACGCCCACGGCATCTGGAGATTCAAAATGATGTGACGAAATTCTGAGAAGAGTACAAAATAGAGGATCATTGAGGTTTTCTAGAGATACAAAAGTTTGTTATTCTCTGATGAGAAATATTGAAATTCAGAGTTTGGTGGTGGCAAGTGGTCAAAACAAAACTGAAAATACAAAAAATTGAATTCGGTGATTTTAGGGAAAAATGAATAGCAAAAGGAAGGTTCTTGATATGAGGGACTTGCAAAATTTAGAAAAAAAAGAAGCTCACATTTCCGTAAATCAGTAATTTCTAAATTTTATGAACTCAGTCATGAAATCTAAATGTTCAGAAAACTTGGAATTGAGAAGTTTGAATCAATCAGATACTCCCAAAAGCAAAAAATGTCAGAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>499 350 151</canonical_bands>
                <polymorphic_bands>849 151</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTGGTTTTCAACATTTCAACT</pcr_primer_p1>
		<pcr_primer_p2>AGAAAACCTCAATGATCCTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACTGGTTTTCAACATTTCAACTCGATTTTCTCACAATTTTCGGCACGAATACGTGTGCAAAATAGTATCCGAATATTTTGGCATTCTTGGAGACCGTCGTTGAAATGCCCCAGGTTTCGGAAGAGGTCGCATTGGATACGCATCCTCAGATGAGACATCTGATGATGACGCCCACGGCATCTGGAGATTCAAAATGATGTGACGAAATTCTGAGAAGAGTACAAAATAGAGGATCATTGAGGTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>ACTGGTTTTCAACATTTCAACTCGATTTTCTCACAATTTTCGGCACGAATACGTGTGYAAAATAGTATCCGAATATTTTGGCATTCTTGGAGACCGTCGTTGAAATGCCCCAGGTTTCGGAAGAGGTCGCATTGGATACGCATCCTCAGATGAGACATCTGATGATGACGCCCACGGCATCTGGAGATTCAAAATGATGTGACGAAATTCTGAGAAGAGTACAAAATAGAGGATCATTGAGGTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11285</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>18617</contig_pos>
        <strand>+</strand>
        <context>CCCCAGGTTT[A/C]GGAAGAGGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCGAATATTTTGGCATTCTTGGAGACCGTCGTTGAAATGCCCCAGGTTT</left_flank>
        <right_flank>GGAAGAGGTCGCATTGGATACGCATCCTCAGATGAGACATCTGATGATGA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTTAGGCTCCGCCCATTTTGATATGATAAGTGATGTCAGAAAGGTTGAGGAGCAAAGGAAATTAGATTTGTGTCCGTCCGGAAATTAATAAAATTGGTATGGACATTTTTCATTTTGTACTTAGTCCGAAAATAGATTTTTGGGTGGAGCTCTGGTTGTTATTGAGAGTGAGATTGATAGTGAAAGAGAAATGGGTAGATAGTAGAGTGATGTTTGAAGCCAGATTTACGCTGAATCGTCAAGGTTAATCCTTTGAATCAAATTCTTACCTTATTAGTTAAATTATGTGTTGTTACAAATAAATTTAGTTAGGTTAAAATGTGTATTTCCTGATTTTCGTCAATTATTGGTCATTAGCCAGCTTTTTTTCTAAATTCGACACTGGTTTTCAACATTTCAACTCGATTTTCTCACAATTTTCGGCACGAATACGTGTGCAAAATAGTATCCGAATATTTTGGCATTCTTGGAGACCGTCGTTGAAATGCCCCAGGTTTCGGAAGAGGTCGCATTGGATACGCATCCTCAGATGAGACATCTGATGATGACGCCCACGGCATCTGGAGATTCAAAATGATGTGACGAAATTCTGAGAAGAGTACAAAATAGAGGATCATTGAGGTTTTCTAGAGATACAAAAGTTTGTTATTCTCTGATGAGAAATATTGAAATTCAGAGTTTGGTGGTGGCAAGTGGTCAAAACAAAACTGAAAATACAAAAAATTGAATTCGGTGATTTTAGGGAAAAATGAATAGCAAAAGGAAGGTTCTTGATATGAGGGACTTGCAAAATTTAGAAAAAAAAGAAGCTCACATTTCCGTAAATCAGTAATTTCTAAATTTTATGAACTCAGTCATGAAATCTAAATGTTCAGAAAACTTGGAATTGAGAAGTTTGAATCAATCAGATACTCCCAAAAGCAAAAAATGTCAGAAATCAAAATTGCATTTTCTAGCTCAAGGATATATTTTCAGATCAAATGCCATCGAGAACAAAG</canonical>
            <polymorphic>TTGTTAGGCTCCGCCCATTTTGATATGATAAGTGATGTCAGAAAGGTTGAGGAGCAAAGGAAATTAGATTTGTGTCCGTCCGGAAATTAATAAAATTGGTATGGACATTTTTCATTTTGTACTTAGTCCGAAAATAGATTTTTGGGTGGAGCTCTGGTTGTTATTGAGAGTGAGATTGATAGTGAAAGAGAAATGGGTAGATAGTAGAGTGATGTTTGAAGCCAGATTTACGCTGAATCGTCAAGGTTAATCCTTTGAATCAAATTCTTACCTTATTAGTTAAATTATGTGTTGTTACAAATAAATTTAGTTAGGTTAAAATGTGTATTTCCTGATTTTCGTCAATTATTGGTCATTAGCCAGCTTTTTTTCTAAATTCGACACTGGTTTTCAACATTTCAACTCGATTTTCTCACAATTTTCGGCACGAATACGTGTGCAAAATAGTATCCGAATATTTTGGCATTCTTGGAGACCGTCGTTGAAATGCCCCAGGTTTMGGAAGAGGTCGCATTGGATACGCATCCTCAGATGAGACATCTGATGATGACGCCCACGGCATCTGGAGATTCAAAATGATGTGACGAAATTCTGAGAAGAGTACAAAATAGAGGATCATTGAGGTTTTCTAGAGATACAAAAGTTTGTTATTCTCTGATGAGAAATATTGAAATTCAGAGTTTGGTGGTGGCAAGTGGTCAAAACAAAACTGAAAATACAAAAAATTGAATTCGGTGATTTTAGGGAAAAATGAATAGCAAAAGGAAGGTTCTTGATATGAGGGACTTGCAAAATTTAGAAAAAAAAGAAGCTCACATTTCCGTAAATCAGTAATTTCTAAATTTTATGAACTCAGTCATGAAATCTAAATGTTCAGAAAACTTGGAATTGAGAAGTTTGAATCAATCAGATACTCCCAAAAGCAAAAAATGTCAGAAATCAAAATTGCATTTTCTAGCTCAAGGATATATTTTCAGATCAAATGCCATCGAGAACAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>323 199 89 63 51 49 41 40 33 29 26 24 21 12</canonical_bands>
                <polymorphic_bands>323 199 89 78 63 51 41 40 33 26 24 21 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTGGTTTTCAACATTTCAACT</pcr_primer_p1>
		<pcr_primer_p2>AGAAAACCTCAATGATCCTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACTGGTTTTCAACATTTCAACTCGATTTTCTCACAATTTTCGGCACGAATACGTGTGCAAAATAGTATCCGAATATTTTGGCATTCTTGGAGACCGTCGTTGAAATGCCCCAGGTTTCGGAAGAGGTCGCATTGGATACGCATCCTCAGATGAGACATCTGATGATGACGCCCACGGCATCTGGAGATTCAAAATGATGTGACGAAATTCTGAGAAGAGTACAAAATAGAGGATCATTGAGGTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>ACTGGTTTTCAACATTTCAACTCGATTTTCTCACAATTTTCGGCACGAATACGTGTGCAAAATAGTATCCGAATATTTTGGCATTCTTGGAGACCGTCGTTGAAATGCCCCAGGTTTMGGAAGAGGTCGCATTGGATACGCATCCTCAGATGAGACATCTGATGATGACGCCCACGGCATCTGGAGATTCAAAATGATGTGACGAAATTCTGAGAAGAGTACAAAATAGAGGATCATTGAGGTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11286</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>18794</contig_pos>
        <strand>+</strand>
        <context>ATTGAAATTC[A/G]GAGTTTGGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTAGAGATACAAAAGTTTGTTATTCTCTGATGAGAAATATTGAAATTC</left_flank>
        <right_flank>GAGTTTGGTGGTGGCAAGTGGTCAAAACAAAACTGAAAATACAAAAAATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAGTGAAAGAGAAATGGGTAGATAGTAGAGTGATGTTTGAAGCCAGATTTACGCTGAATCGTCAAGGTTAATCCTTTGAATCAAATTCTTACCTTATTAGTTAAATTATGTGTTGTTACAAATAAATTTAGTTAGGTTAAAATGTGTATTTCCTGATTTTCGTCAATTATTGGTCATTAGCCAGCTTTTTTTCTAAATTCGACACTGGTTTTCAACATTTCAACTCGATTTTCTCACAATTTTCGGCACGAATACGTGTGCAAAATAGTATCCGAATATTTTGGCATTCTTGGAGACCGTCGTTGAAATGCCCCAGGTTTCGGAAGAGGTCGCATTGGATACGCATCCTCAGATGAGACATCTGATGATGACGCCCACGGCATCTGGAGATTCAAAATGATGTGACGAAATTCTGAGAAGAGTACAAAATAGAGGATCATTGAGGTTTTCTAGAGATACAAAAGTTTGTTATTCTCTGATGAGAAATATTGAAATTCAGAGTTTGGTGGTGGCAAGTGGTCAAAACAAAACTGAAAATACAAAAAATTGAATTCGGTGATTTTAGGGAAAAATGAATAGCAAAAGGAAGGTTCTTGATATGAGGGACTTGCAAAATTTAGAAAAAAAAGAAGCTCACATTTCCGTAAATCAGTAATTTCTAAATTTTATGAACTCAGTCATGAAATCTAAATGTTCAGAAAACTTGGAATTGAGAAGTTTGAATCAATCAGATACTCCCAAAAGCAAAAAATGTCAGAAATCAAAATTGCATTTTCTAGCTCAAGGATATATTTTCAGATCAAATGCCATCGAGAACAAAGAAAAAGAAAAAGAAATGTGGCAATTTTGAAAAGCCGGATAAATTTCTGGCAGGATATCTTCAAATTTTAGGGGATAAGAAAAAAAAAGAAGAACACACATAAAAATTCGGAGTTGAATGACTTTTCTGGAAGCCTTCCATGCCCGTTTTTATAGCCTCAATTTTCTACTGTTCTTCT</canonical>
            <polymorphic>GATAGTGAAAGAGAAATGGGTAGATAGTAGAGTGATGTTTGAAGCCAGATTTACGCTGAATCGTCAAGGTTAATCCTTTGAATCAAATTCTTACCTTATTAGTTAAATTATGTGTTGTTACAAATAAATTTAGTTAGGTTAAAATGTGTATTTCCTGATTTTCGTCAATTATTGGTCATTAGCCAGCTTTTTTTCTAAATTCGACACTGGTTTTCAACATTTCAACTCGATTTTCTCACAATTTTCGGCACGAATACGTGTGCAAAATAGTATCCGAATATTTTGGCATTCTTGGAGACCGTCGTTGAAATGCCCCAGGTTTCGGAAGAGGTCGCATTGGATACGCATCCTCAGATGAGACATCTGATGATGACGCCCACGGCATCTGGAGATTCAAAATGATGTGACGAAATTCTGAGAAGAGTACAAAATAGAGGATCATTGAGGTTTTCTAGAGATACAAAAGTTTGTTATTCTCTGATGAGAAATATTGAAATTCRGAGTTTGGTGGTGGCAAGTGGTCAAAACAAAACTGAAAATACAAAAAATTGAATTCGGTGATTTTAGGGAAAAATGAATAGCAAAAGGAAGGTTCTTGATATGAGGGACTTGCAAAATTTAGAAAAAAAAGAAGCTCACATTTCCGTAAATCAGTAATTTCTAAATTTTATGAACTCAGTCATGAAATCTAAATGTTCAGAAAACTTGGAATTGAGAAGTTTGAATCAATCAGATACTCCCAAAAGCAAAAAATGTCAGAAATCAAAATTGCATTTTCTAGCTCAAGGATATATTTTCAGATCAAATGCCATCGAGAACAAAGAAAAAGAAAAAGAAATGTGGCAATTTTGAAAAGCCGGATAAATTTCTGGCAGGATATCTTCAAATTTTAGGGGATAAGAAAAAAAAAGAAGAACACACATAAAAATTCGGAGTTGAATGACTTTTCTGGAAGCCTTCCATGCCCGTTTTTATAGCCTCAATTTTCTACTGTTCTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGACGAAATTCTGAGAAGAGTA</pcr_primer_p1>
		<pcr_primer_p2>TTACGGAAATGTGAGCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTGACGAAATTCTGAGAAGAGTACAAAATAGAGGATCATTGAGGTTTTCTAGAGATACAAAAGTTTGTTATTCTCTGATGAGAAATATTGAAATTCAGAGTTTGGTGGTGGCAAGTGGTCAAAACAAAACTGAAAATACAAAAAATTGAATTCGGTGATTTTAGGGAAAAATGAATAGCAAAAGGAAGGTTCTTGATATGAGGGACTTGCAAAATTTAGAAAAAAAAGAAGCTCACATTTCCGTAA</canonical_amplicon>
		<polymorphic_amplicon>GTGACGAAATTCTGAGAAGAGTACAAAATAGAGGATCATTGAGGTTTTCTAGAGATACAAAAGTTTGTTATTCTCTGATGAGAAATATTGAAATTCRGAGTTTGGTGGTGGCAAGTGGTCAAAACAAAACTGAAAATACAAAAAATTGAATTCGGTGATTTTAGGGAAAAATGAATAGCAAAAGGAAGGTTCTTGATATGAGGGACTTGCAAAATTTAGAAAAAAAAGAAGCTCACATTTCCGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11287</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>18847</contig_pos>
        <strand>+</strand>
        <context>AAAAAATTGA[A/G]TTCGGTGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTGGTGGTGGCAAGTGGTCAAAACAAAACTGAAAATACAAAAAATTGA</left_flank>
        <right_flank>TTCGGTGATTTTAGGGAAAAATGAATAGCAAAAGGAAGGTTCTTGATATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCTGAATCGTCAAGGTTAATCCTTTGAATCAAATTCTTACCTTATTAGTTAAATTATGTGTTGTTACAAATAAATTTAGTTAGGTTAAAATGTGTATTTCCTGATTTTCGTCAATTATTGGTCATTAGCCAGCTTTTTTTCTAAATTCGACACTGGTTTTCAACATTTCAACTCGATTTTCTCACAATTTTCGGCACGAATACGTGTGCAAAATAGTATCCGAATATTTTGGCATTCTTGGAGACCGTCGTTGAAATGCCCCAGGTTTCGGAAGAGGTCGCATTGGATACGCATCCTCAGATGAGACATCTGATGATGACGCCCACGGCATCTGGAGATTCAAAATGATGTGACGAAATTCTGAGAAGAGTACAAAATAGAGGATCATTGAGGTTTTCTAGAGATACAAAAGTTTGTTATTCTCTGATGAGAAATATTGAAATTCAGAGTTTGGTGGTGGCAAGTGGTCAAAACAAAACTGAAAATACAAAAAATTGAATTCGGTGATTTTAGGGAAAAATGAATAGCAAAAGGAAGGTTCTTGATATGAGGGACTTGCAAAATTTAGAAAAAAAAGAAGCTCACATTTCCGTAAATCAGTAATTTCTAAATTTTATGAACTCAGTCATGAAATCTAAATGTTCAGAAAACTTGGAATTGAGAAGTTTGAATCAATCAGATACTCCCAAAAGCAAAAAATGTCAGAAATCAAAATTGCATTTTCTAGCTCAAGGATATATTTTCAGATCAAATGCCATCGAGAACAAAGAAAAAGAAAAAGAAATGTGGCAATTTTGAAAAGCCGGATAAATTTCTGGCAGGATATCTTCAAATTTTAGGGGATAAGAAAAAAAAAGAAGAACACACATAAAAATTCGGAGTTGAATGACTTTTCTGGAAGCCTTCCATGCCCGTTTTTATAGCCTCAATTTTCTACTGTTCTTCTTCTATTTTTTTCTGTTCTTTCATTTTTTTTCCAGAAGCTTTCTCAGAAATAGA</canonical>
            <polymorphic>CGCTGAATCGTCAAGGTTAATCCTTTGAATCAAATTCTTACCTTATTAGTTAAATTATGTGTTGTTACAAATAAATTTAGTTAGGTTAAAATGTGTATTTCCTGATTTTCGTCAATTATTGGTCATTAGCCAGCTTTTTTTCTAAATTCGACACTGGTTTTCAACATTTCAACTCGATTTTCTCACAATTTTCGGCACGAATACGTGTGCAAAATAGTATCCGAATATTTTGGCATTCTTGGAGACCGTCGTTGAAATGCCCCAGGTTTCGGAAGAGGTCGCATTGGATACGCATCCTCAGATGAGACATCTGATGATGACGCCCACGGCATCTGGAGATTCAAAATGATGTGACGAAATTCTGAGAAGAGTACAAAATAGAGGATCATTGAGGTTTTCTAGAGATACAAAAGTTTGTTATTCTCTGATGAGAAATATTGAAATTCAGAGTTTGGTGGTGGCAAGTGGTCAAAACAAAACTGAAAATACAAAAAATTGARTTCGGTGATTTTAGGGAAAAATGAATAGCAAAAGGAAGGTTCTTGATATGAGGGACTTGCAAAATTTAGAAAAAAAAGAAGCTCACATTTCCGTAAATCAGTAATTTCTAAATTTTATGAACTCAGTCATGAAATCTAAATGTTCAGAAAACTTGGAATTGAGAAGTTTGAATCAATCAGATACTCCCAAAAGCAAAAAATGTCAGAAATCAAAATTGCATTTTCTAGCTCAAGGATATATTTTCAGATCAAATGCCATCGAGAACAAAGAAAAAGAAAAAGAAATGTGGCAATTTTGAAAAGCCGGATAAATTTCTGGCAGGATATCTTCAAATTTTAGGGGATAAGAAAAAAAAAGAAGAACACACATAAAAATTCGGAGTTGAATGACTTTTCTGGAAGCCTTCCATGCCCGTTTTTATAGCCTCAATTTTCTACTGTTCTTCTTCTATTTTTTTCTGTTCTTTCATTTTTTTTCCAGAAGCTTTCTCAGAAATAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>213 200 127 84 71 64 57 48 41 41 32 22</canonical_bands>
                <polymorphic_bands>213 200 127 121 84 71 48 41 41 32 22</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>171 84 78 72 64 57 55 52 46 42 41 40 40 32 31 22 21 20 19 8 5</canonical_bands>
                <polymorphic_bands>171 84 78 72 69 57 55 52 46 42 41 40 40 32 31 22 21 20 19 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGTTTGTTATTCTCTGATGA</pcr_primer_p1>
		<pcr_primer_p2>CCAAGTTTTCTGAACATTTAGATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGTTTGTTATTCTCTGATGAGAAATATTGAAATTCAGAGTTTGGTGGTGGCAAGTGGTCAAAACAAAACTGAAAATACAAAAAATTGAATTCGGTGATTTTAGGGAAAAATGAATAGCAAAAGGAAGGTTCTTGATATGAGGGACTTGCAAAATTTAGAAAAAAAAGAAGCTCACATTTCCGTAAATCAGTAATTTCTAAATTTTATGAACTCAGTCATGAAATCTAAATGTTCAGAAAACTTGG</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGTTTGTTATTCTCTGATGAGAAATATTGAAATTCAGAGTTTGGTGGTGGCAAGTGGTCAAAACAAAACTGAAAATACAAAAAATTGARTTCGGTGATTTTAGGGAAAAATGAATAGCAAAAGGAAGGTTCTTGATATGAGGGACTTGCAAAATTTAGAAAAAAAAGAAGCTCACATTTCCGTAAATCAGTAATTTCTAAATTTTATGAACTCAGTCATGAAATCTAAATGTTCAGAAAACTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11288</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>18944</contig_pos>
        <strand></strand>
        <context>ATTTCCGTAA[A/T]TCAGTAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATGAGGGACTTGCAAAATTTAGAAAAAAAAGAAGCTCACATTTCCGTAA</left_flank>
        <right_flank>TCAGTAATTTCTAAATTTTATGAACTCAGTCATGAAATCTAAATGTTCAG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCTGATTTTCGTCAATTATTGGTCATTAGCCAGCTTTTTTTCTAAATTCGACACTGGTTTTCAACATTTCAACTCGATTTTCTCACAATTTTCGGCACGAATACGTGTGCAAAATAGTATCCGAATATTTTGGCATTCTTGGAGACCGTCGTTGAAATGCCCCAGGTTTCGGAAGAGGTCGCATTGGATACGCATCCTCAGATGAGACATCTGATGATGACGCCCACGGCATCTGGAGATTCAAAATGATGTGACGAAATTCTGAGAAGAGTACAAAATAGAGGATCATTGAGGTTTTCTAGAGATACAAAAGTTTGTTATTCTCTGATGAGAAATATTGAAATTCAGAGTTTGGTGGTGGCAAGTGGTCAAAACAAAACTGAAAATACAAAAAATTGAATTCGGTGATTTTAGGGAAAAATGAATAGCAAAAGGAAGGTTCTTGATATGAGGGACTTGCAAAATTTAGAAAAAAAAGAAGCTCACATTTCCGTAAATCAGTAATTTCTAAATTTTATGAACTCAGTCATGAAATCTAAATGTTCAGAAAACTTGGAATTGAGAAGTTTGAATCAATCAGATACTCCCAAAAGCAAAAAATGTCAGAAATCAAAATTGCATTTTCTAGCTCAAGGATATATTTTCAGATCAAATGCCATCGAGAACAAAGAAAAAGAAAAAGAAATGTGGCAATTTTGAAAAGCCGGATAAATTTCTGGCAGGATATCTTCAAATTTTAGGGGATAAGAAAAAAAAAGAAGAACACACATAAAAATTCGGAGTTGAATGACTTTTCTGGAAGCCTTCCATGCCCGTTTTTATAGCCTCAATTTTCTACTGTTCTTCTTCTATTTTTTTCTGTTCTTTCATTTTTTTTCCAGAAGCTTTCTCAGAAATAGAATCTAAAAATGAATGTGAGCAAAAATGTTGAAATTTGACACCTTCCTCTAACCAAAATGGTGATGATAGATTGCGTGTCTGTTGTGTTTTTTGTAAG</canonical>
            <polymorphic>TTTCCTGATTTTCGTCAATTATTGGTCATTAGCCAGCTTTTTTTCTAAATTCGACACTGGTTTTCAACATTTCAACTCGATTTTCTCACAATTTTCGGCACGAATACGTGTGCAAAATAGTATCCGAATATTTTGGCATTCTTGGAGACCGTCGTTGAAATGCCCCAGGTTTCGGAAGAGGTCGCATTGGATACGCATCCTCAGATGAGACATCTGATGATGACGCCCACGGCATCTGGAGATTCAAAATGATGTGACGAAATTCTGAGAAGAGTACAAAATAGAGGATCATTGAGGTTTTCTAGAGATACAAAAGTTTGTTATTCTCTGATGAGAAATATTGAAATTCAGAGTTTGGTGGTGGCAAGTGGTCAAAACAAAACTGAAAATACAAAAAATTGAATTCGGTGATTTTAGGGAAAAATGAATAGCAAAAGGAAGGTTCTTGATATGAGGGACTTGCAAAATTTAGAAAAAAAAGAAGCTCACATTTCCGTAAWTCAGTAATTTCTAAATTTTATGAACTCAGTCATGAAATCTAAATGTTCAGAAAACTTGGAATTGAGAAGTTTGAATCAATCAGATACTCCCAAAAGCAAAAAATGTCAGAAATCAAAATTGCATTTTCTAGCTCAAGGATATATTTTCAGATCAAATGCCATCGAGAACAAAGAAAAAGAAAAAGAAATGTGGCAATTTTGAAAAGCCGGATAAATTTCTGGCAGGATATCTTCAAATTTTAGGGGATAAGAAAAAAAAAGAAGAACACACATAAAAATTCGGAGTTGAATGACTTTTCTGGAAGCCTTCCATGCCCGTTTTTATAGCCTCAATTTTCTACTGTTCTTCTTCTATTTTTTTCTGTTCTTTCATTTTTTTTCCAGAAGCTTTCTCAGAAATAGAATCTAAAAATGAATGTGAGCAAAAATGTTGAAATTTGACACCTTCCTCTAACCAAAATGGTGATGATAGATTGCGTGTCTGTTGTGTTTTTTGTAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGTTTGTTATTCTCTGATGA</pcr_primer_p1>
		<pcr_primer_p2>CCAAGTTTTCTGAACATTTAGATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGTTTGTTATTCTCTGATGAGAAATATTGAAATTCAGAGTTTGGTGGTGGCAAGTGGTCAAAACAAAACTGAAAATACAAAAAATTGAATTCGGTGATTTTAGGGAAAAATGAATAGCAAAAGGAAGGTTCTTGATATGAGGGACTTGCAAAATTTAGAAAAAAAAGAAGCTCACATTTCCGTAAATCAGTAATTTCTAAATTTTATGAACTCAGTCATGAAATCTAAATGTTCAGAAAACTTGG</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGTTTGTTATTCTCTGATGAGAAATATTGAAATTCAGAGTTTGGTGGTGGCAAGTGGTCAAAACAAAACTGAAAATACAAAAAATTGAATTCGGTGATTTTAGGGAAAAATGAATAGCAAAAGGAAGGTTCTTGATATGAGGGACTTGCAAAATTTAGAAAAAAAAGAAGCTCACATTTCCGTAAWTCAGTAATTTCTAAATTTTATGAACTCAGTCATGAAATCTAAATGTTCAGAAAACTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11289</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>23587</contig_pos>
        <strand>+</strand>
        <context>AAAAGGAAAC[A/G]ATGTGTATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGATGCTCGAACTCGCATTAACTGGAATAAATGTAATTAAAAAAGGAAAC</left_flank>
        <right_flank>ATGTGTATTTCAAATGGATATAGTTGGAAGAGTGAACCTAATTTTATATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATAAGTTTTTCGTTTTCAGATTCTTTTCTTATTTTTACTGGGAATTCAACCAGGAAATTCTCCAAACATCACATTCTTTGTAGCTCGCAAAGAAAATTTTTATGGCAACAATTCAATTTTTGGTAAAACAAAAATCGTGGTGAAAATGTGATTTTTCCATTCACATTATCTTCAAAATACACAAAATAGGATAACAAAACAAATAGGTTATTTTTAGAAATCTTCTCGTCAAATCTATGAAATTACACCTGCACTAACAGTCTTCGAGGTAAATTATATTTTTAAAAATTGTTTTTACCTTTTCTACTAGAGATTAATGTTCTGAATGTTATCTTTAAAAAATTACTCACCACTTGTCGCCTCGGTTTCCGCTGACAGTCTACTATGACTGTGGCTATTGAGTTGTGGCGTCAGAAATGGAATCCTATCATCCATGTGACAATAGGACGATGCTCGAACTCGCATTAACTGGAATAAATGTAATTAAAAAAGGAAACGATGTGTATTTCAAATGGATATAGTTGGAAGAGTGAACCTAATTTTATATAAAAAATATATTCAAAAAATAGGTCAAATAGAAAATTTGAGGAGCATATTTAACAAATGATGACTCATTTTTCCATGTGTTCCAAAAAACTTTCGTAGGGGAAAAAGTTGAGAAGGCTGAGAAAAAGAAGAGTCAAAAGTTTAATTTTCGAAAGTTTCATTTCATTTCCCAACATTTTCTTTTGTTTAACGTAATCTTCAAAACGTTTTGGGCTTTTTTGTTTGTCTTGACACCTATAAAATGGAAAATTTCAGAAAAATATTTCCTTGCTTCTGATCTGCAAATATCTGCTTACAGGGGCTTTTCAAAACTTTATGCATTTAAGAACTTAAAGTTTTGATATAAAATAAGTCAAGTGGTATGAAAAAAAATGGAAGAAAAAAGGGAAGAGCATTGGAAAAAAAAGAACTTGGACGCACTTACTCAATTAAGTTAGCCGCAATTTTTCTCC</canonical>
            <polymorphic>AGATAAGTTTTTCGTTTTCAGATTCTTTTCTTATTTTTACTGGGAATTCAACCAGGAAATTCTCCAAACATCACATTCTTTGTAGCTCGCAAAGAAAATTTTTATGGCAACAATTCAATTTTTGGTAAAACAAAAATCGTGGTGAAAATGTGATTTTTCCATTCACATTATCTTCAAAATACACAAAATAGGATAACAAAACAAATAGGTTATTTTTAGAAATCTTCTCGTCAAATCTATGAAATTACACCTGCACTAACAGTCTTCGAGGTAAATTATATTTTTAAAAATTGTTTTTACCTTTTCTACTAGAGATTAATGTTCTGAATGTTATCTTTAAAAAATTACTCACCACTTGTCGCCTCGGTTTCCGCTGACAGTCTACTATGACTGTGGCTATTGAGTTGTGGCGTCAGAAATGGAATCCTATCATCCATGTGACAATAGGACGATGCTCGAACTCGCATTAACTGGAATAAATGTAATTAAAAAAGGAAACRATGTGTATTTCAAATGGATATAGTTGGAAGAGTGAACCTAATTTTATATAAAAAATATATTCAAAAAATAGGTCAAATAGAAAATTTGAGGAGCATATTTAACAAATGATGACTCATTTTTCCATGTGTTCCAAAAAACTTTCGTAGGGGAAAAAGTTGAGAAGGCTGAGAAAAAGAAGAGTCAAAAGTTTAATTTTCGAAAGTTTCATTTCATTTCCCAACATTTTCTTTTGTTTAACGTAATCTTCAAAACGTTTTGGGCTTTTTTGTTTGTCTTGACACCTATAAAATGGAAAATTTCAGAAAAATATTTCCTTGCTTCTGATCTGCAAATATCTGCTTACAGGGGCTTTTCAAAACTTTATGCATTTAAGAACTTAAAGTTTTGATATAAAATAAGTCAAGTGGTATGAAAAAAAATGGAAGAAAAAAGGGAAGAGCATTGGAAAAAAAAGAACTTGGACGCACTTACTCAATTAAGTTAGCCGCAATTTTTCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTACTATGACTGTGGCTATTGA</pcr_primer_p1>
		<pcr_primer_p2>ACATGGAAAAATGAGTCATCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTCTACTATGACTGTGGCTATTGAGTTGTGGCGTCAGAAATGGAATCCTATCATCCATGTGACAATAGGACGATGCTCGAACTCGCATTAACTGGAATAAATGTAATTAAAAAAGGAAACGATGTGTATTTCAAATGGATATAGTTGGAAGAGTGAACCTAATTTTATATAAAAAATATATTCAAAAAATAGGTCAAATAGAAAATTTGAGGAGCATATTTAACAAATGATGACTCATTTTTCCATGT</canonical_amplicon>
		<polymorphic_amplicon>GTCTACTATGACTGTGGCTATTGAGTTGTGGCGTCAGAAATGGAATCCTATCATCCATGTGACAATAGGACGATGCTCGAACTCGCATTAACTGGAATAAATGTAATTAAAAAAGGAAACRATGTGTATTTCAAATGGATATAGTTGGAAGAGTGAACCTAATTTTATATAAAAAATATATTCAAAAAATAGGTCAAATAGAAAATTTGAGGAGCATATTTAACAAATGATGACTCATTTTTCCATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11290</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>23573</contig_pos>
        <strand>+</strand>
        <context>ATAAATGTAA[A/T]TAAAAAAGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGTGACAATAGGACGATGCTCGAACTCGCATTAACTGGAATAAATGTAA</left_flank>
        <right_flank>TAAAAAAGGAAACGATGTGTATTTCAAATGGATATAGTTGGAAGAGTGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTTTTGATTTACAGATAAGTTTTTCGTTTTCAGATTCTTTTCTTATTTTTACTGGGAATTCAACCAGGAAATTCTCCAAACATCACATTCTTTGTAGCTCGCAAAGAAAATTTTTATGGCAACAATTCAATTTTTGGTAAAACAAAAATCGTGGTGAAAATGTGATTTTTCCATTCACATTATCTTCAAAATACACAAAATAGGATAACAAAACAAATAGGTTATTTTTAGAAATCTTCTCGTCAAATCTATGAAATTACACCTGCACTAACAGTCTTCGAGGTAAATTATATTTTTAAAAATTGTTTTTACCTTTTCTACTAGAGATTAATGTTCTGAATGTTATCTTTAAAAAATTACTCACCACTTGTCGCCTCGGTTTCCGCTGACAGTCTACTATGACTGTGGCTATTGAGTTGTGGCGTCAGAAATGGAATCCTATCATCCATGTGACAATAGGACGATGCTCGAACTCGCATTAACTGGAATAAATGTAATTAAAAAAGGAAACGATGTGTATTTCAAATGGATATAGTTGGAAGAGTGAACCTAATTTTATATAAAAAATATATTCAAAAAATAGGTCAAATAGAAAATTTGAGGAGCATATTTAACAAATGATGACTCATTTTTCCATGTGTTCCAAAAAACTTTCGTAGGGGAAAAAGTTGAGAAGGCTGAGAAAAAGAAGAGTCAAAAGTTTAATTTTCGAAAGTTTCATTTCATTTCCCAACATTTTCTTTTGTTTAACGTAATCTTCAAAACGTTTTGGGCTTTTTTGTTTGTCTTGACACCTATAAAATGGAAAATTTCAGAAAAATATTTCCTTGCTTCTGATCTGCAAATATCTGCTTACAGGGGCTTTTCAAAACTTTATGCATTTAAGAACTTAAAGTTTTGATATAAAATAAGTCAAGTGGTATGAAAAAAAATGGAAGAAAAAAGGGAAGAGCATTGGAAAAAAAAGAACTTGGACGCACTTACTCAATTAAGTTAGC</canonical>
            <polymorphic>ACTTTTTGATTTACAGATAAGTTTTTCGTTTTCAGATTCTTTTCTTATTTTTACTGGGAATTCAACCAGGAAATTCTCCAAACATCACATTCTTTGTAGCTCGCAAAGAAAATTTTTATGGCAACAATTCAATTTTTGGTAAAACAAAAATCGTGGTGAAAATGTGATTTTTCCATTCACATTATCTTCAAAATACACAAAATAGGATAACAAAACAAATAGGTTATTTTTAGAAATCTTCTCGTCAAATCTATGAAATTACACCTGCACTAACAGTCTTCGAGGTAAATTATATTTTTAAAAATTGTTTTTACCTTTTCTACTAGAGATTAATGTTCTGAATGTTATCTTTAAAAAATTACTCACCACTTGTCGCCTCGGTTTCCGCTGACAGTCTACTATGACTGTGGCTATTGAGTTGTGGCGTCAGAAATGGAATCCTATCATCCATGTGACAATAGGACGATGCTCGAACTCGCATTAACTGGAATAAATGTAAWTAAAAAAGGAAACGATGTGTATTTCAAATGGATATAGTTGGAAGAGTGAACCTAATTTTATATAAAAAATATATTCAAAAAATAGGTCAAATAGAAAATTTGAGGAGCATATTTAACAAATGATGACTCATTTTTCCATGTGTTCCAAAAAACTTTCGTAGGGGAAAAAGTTGAGAAGGCTGAGAAAAAGAAGAGTCAAAAGTTTAATTTTCGAAAGTTTCATTTCATTTCCCAACATTTTCTTTTGTTTAACGTAATCTTCAAAACGTTTTGGGCTTTTTTGTTTGTCTTGACACCTATAAAATGGAAAATTTCAGAAAAATATTTCCTTGCTTCTGATCTGCAAATATCTGCTTACAGGGGCTTTTCAAAACTTTATGCATTTAAGAACTTAAAGTTTTGATATAAAATAAGTCAAGTGGTATGAAAAAAAATGGAAGAAAAAAGGGAAGAGCATTGGAAAAAAAAGAACTTGGACGCACTTACTCAATTAAGTTAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>298 135 130 113 99 91 45 32 21 19 9 8</canonical_bands>
                <polymorphic_bands>298 135 132 130 99 91 45 32 21 9 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>179 141 126 109 104 58 56 54 43 39 31 15 15 13 12 5</canonical_bands>
                <polymorphic_bands>197 179 126 109 104 58 54 43 39 31 15 15 13 12 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTACTATGACTGTGGCTATTGA</pcr_primer_p1>
		<pcr_primer_p2>ACATGGAAAAATGAGTCATCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTCTACTATGACTGTGGCTATTGAGTTGTGGCGTCAGAAATGGAATCCTATCATCCATGTGACAATAGGACGATGCTCGAACTCGCATTAACTGGAATAAATGTAATTAAAAAAGGAAACGATGTGTATTTCAAATGGATATAGTTGGAAGAGTGAACCTAATTTTATATAAAAAATATATTCAAAAAATAGGTCAAATAGAAAATTTGAGGAGCATATTTAACAAATGATGACTCATTTTTCCATGT</canonical_amplicon>
		<polymorphic_amplicon>GTCTACTATGACTGTGGCTATTGAGTTGTGGCGTCAGAAATGGAATCCTATCATCCATGTGACAATAGGACGATGCTCGAACTCGCATTAACTGGAATAAATGTAAWTAAAAAAGGAAACGATGTGTATTTCAAATGGATATAGTTGGAAGAGTGAACCTAATTTTATATAAAAAATATATTCAAAAAATAGGTCAAATAGAAAATTTGAGGAGCATATTTAACAAATGATGACTCATTTTTCCATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11291</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>23528</contig_pos>
        <strand>+</strand>
        <context>CATCCATGTG[A/G]CAATAGGACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGTGGCTATTGAGTTGTGGCGTCAGAAATGGAATCCTATCATCCATGTG</left_flank>
        <right_flank>CAATAGGACGATGCTCGAACTCGCATTAACTGGAATAAATGTAATTAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCAAATATTACCTTTTTCGCCTACCCTCCAAACAACTTCGAAATACTTTTTGATTTACAGATAAGTTTTTCGTTTTCAGATTCTTTTCTTATTTTTACTGGGAATTCAACCAGGAAATTCTCCAAACATCACATTCTTTGTAGCTCGCAAAGAAAATTTTTATGGCAACAATTCAATTTTTGGTAAAACAAAAATCGTGGTGAAAATGTGATTTTTCCATTCACATTATCTTCAAAATACACAAAATAGGATAACAAAACAAATAGGTTATTTTTAGAAATCTTCTCGTCAAATCTATGAAATTACACCTGCACTAACAGTCTTCGAGGTAAATTATATTTTTAAAAATTGTTTTTACCTTTTCTACTAGAGATTAATGTTCTGAATGTTATCTTTAAAAAATTACTCACCACTTGTCGCCTCGGTTTCCGCTGACAGTCTACTATGACTGTGGCTATTGAGTTGTGGCGTCAGAAATGGAATCCTATCATCCATGTGACAATAGGACGATGCTCGAACTCGCATTAACTGGAATAAATGTAATTAAAAAAGGAAACGATGTGTATTTCAAATGGATATAGTTGGAAGAGTGAACCTAATTTTATATAAAAAATATATTCAAAAAATAGGTCAAATAGAAAATTTGAGGAGCATATTTAACAAATGATGACTCATTTTTCCATGTGTTCCAAAAAACTTTCGTAGGGGAAAAAGTTGAGAAGGCTGAGAAAAAGAAGAGTCAAAAGTTTAATTTTCGAAAGTTTCATTTCATTTCCCAACATTTTCTTTTGTTTAACGTAATCTTCAAAACGTTTTGGGCTTTTTTGTTTGTCTTGACACCTATAAAATGGAAAATTTCAGAAAAATATTTCCTTGCTTCTGATCTGCAAATATCTGCTTACAGGGGCTTTTCAAAACTTTATGCATTTAAGAACTTAAAGTTTTGATATAAAATAAGTCAAGTGGTATGAAAAAAAATGGAAGAAAAAAGGGAAGAGC</canonical>
            <polymorphic>CTCAAATATTACCTTTTTCGCCTACCCTCCAAACAACTTCGAAATACTTTTTGATTTACAGATAAGTTTTTCGTTTTCAGATTCTTTTCTTATTTTTACTGGGAATTCAACCAGGAAATTCTCCAAACATCACATTCTTTGTAGCTCGCAAAGAAAATTTTTATGGCAACAATTCAATTTTTGGTAAAACAAAAATCGTGGTGAAAATGTGATTTTTCCATTCACATTATCTTCAAAATACACAAAATAGGATAACAAAACAAATAGGTTATTTTTAGAAATCTTCTCGTCAAATCTATGAAATTACACCTGCACTAACAGTCTTCGAGGTAAATTATATTTTTAAAAATTGTTTTTACCTTTTCTACTAGAGATTAATGTTCTGAATGTTATCTTTAAAAAATTACTCACCACTTGTCGCCTCGGTTTCCGCTGACAGTCTACTATGACTGTGGCTATTGAGTTGTGGCGTCAGAAATGGAATCCTATCATCCATGTGRCAATAGGACGATGCTCGAACTCGCATTAACTGGAATAAATGTAATTAAAAAAGGAAACGATGTGTATTTCAAATGGATATAGTTGGAAGAGTGAACCTAATTTTATATAAAAAATATATTCAAAAAATAGGTCAAATAGAAAATTTGAGGAGCATATTTAACAAATGATGACTCATTTTTCCATGTGTTCCAAAAAACTTTCGTAGGGGAAAAAGTTGAGAAGGCTGAGAAAAAGAAGAGTCAAAAGTTTAATTTTCGAAAGTTTCATTTCATTTCCCAACATTTTCTTTTGTTTAACGTAATCTTCAAAACGTTTTGGGCTTTTTTGTTTGTCTTGACACCTATAAAATGGAAAATTTCAGAAAAATATTTCCTTGCTTCTGATCTGCAAATATCTGCTTACAGGGGCTTTTCAAAACTTTATGCATTTAAGAACTTAAAGTTTTGATATAAAATAAGTCAAGTGGTATGAAAAAAAATGGAAGAAAAAAGGGAAGAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTACTATGACTGTGGCTATTGA</pcr_primer_p1>
		<pcr_primer_p2>ACATGGAAAAATGAGTCATCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTCTACTATGACTGTGGCTATTGAGTTGTGGCGTCAGAAATGGAATCCTATCATCCATGTGACAATAGGACGATGCTCGAACTCGCATTAACTGGAATAAATGTAATTAAAAAAGGAAACGATGTGTATTTCAAATGGATATAGTTGGAAGAGTGAACCTAATTTTATATAAAAAATATATTCAAAAAATAGGTCAAATAGAAAATTTGAGGAGCATATTTAACAAATGATGACTCATTTTTCCATGT</canonical_amplicon>
		<polymorphic_amplicon>GTCTACTATGACTGTGGCTATTGAGTTGTGGCGTCAGAAATGGAATCCTATCATCCATGTGRCAATAGGACGATGCTCGAACTCGCATTAACTGGAATAAATGTAATTAAAAAAGGAAACGATGTGTATTTCAAATGGATATAGTTGGAAGAGTGAACCTAATTTTATATAAAAAATATATTCAAAAAATAGGTCAAATAGAAAATTTGAGGAGCATATTTAACAAATGATGACTCATTTTTCCATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11292</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>23387</contig_pos>
        <strand>+</strand>
        <context>attGTTTTTA[A/C]CTTTTCTACT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCTGCACTAACAGTCTTCGAGGTAAATTATATTTTTAAAAATTGTTTTTA</left_flank>
        <right_flank>CTTTTCTACTAGAGATTAATGTTCTGAATGTTATCTTTAAAAAATTACTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCACAATCAAAGCTCTCGCTGAAAAATGAAGTACTCCATTTCAAAAATTTTTTAAAGTTTCCAAAAAACTTCCAGTTTTTCAATATTTCGAAGAACACAAAAGTTTCTGTAACTTCGAAATTGAGTTATTACGAACGAACTCAAATATTACCTTTTTCGCCTACCCTCCAAACAACTTCGAAATACTTTTTGATTTACAGATAAGTTTTTCGTTTTCAGATTCTTTTCTTATTTTTACTGGGAATTCAACCAGGAAATTCTCCAAACATCACATTCTTTGTAGCTCGCAAAGAAAATTTTTATGGCAACAATTCAATTTTTGGTAAAACAAAAATCGTGGTGAAAATGTGATTTTTCCATTCACATTATCTTCAAAATACACAAAATAGGATAACAAAACAAATAGGTTATTTTTAGAAATCTTCTCGTCAAATCTATGAAATTACACCTGCACTAACAGTCTTCGAGGTAAATTATATTTTTAAAAATTGTTTTTACCTTTTCTACTAGAGATTAATGTTCTGAATGTTATCTTTAAAAAATTACTCACCACTTGTCGCCTCGGTTTCCGCTGACAGTCTACTATGACTGTGGCTATTGAGTTGTGGCGTCAGAAATGGAATCCTATCATCCATGTGACAATAGGACGATGCTCGAACTCGCATTAACTGGAATAAATGTAATTAAAAAAGGAAACGATGTGTATTTCAAATGGATATAGTTGGAAGAGTGAACCTAATTTTATATAAAAAATATATTCAAAAAATAGGTCAAATAGAAAATTTGAGGAGCATATTTAACAAATGATGACTCATTTTTCCATGTGTTCCAAAAAACTTTCGTAGGGGAAAAAGTTGAGAAGGCTGAGAAAAAGAAGAGTCAAAAGTTTAATTTTCGAAAGTTTCATTTCATTTCCCAACATTTTCTTTTGTTTAACGTAATCTTCAAAACGTTTTGGGCTTTTTTGTTTGTCTTGACACCTATAAAATGGAAAATTT</canonical>
            <polymorphic>AAGCACAATCAAAGCTCTCGCTGAAAAATGAAGTACTCCATTTCAAAAATTTTTTAAAGTTTCCAAAAAACTTCCAGTTTTTCAATATTTCGAAGAACACAAAAGTTTCTGTAACTTCGAAATTGAGTTATTACGAACGAACTCAAATATTACCTTTTTCGCCTACCCTCCAAACAACTTCGAAATACTTTTTGATTTACAGATAAGTTTTTCGTTTTCAGATTCTTTTCTTATTTTTACTGGGAATTCAACCAGGAAATTCTCCAAACATCACATTCTTTGTAGCTCGCAAAGAAAATTTTTATGGCAACAATTCAATTTTTGGTAAAACAAAAATCGTGGTGAAAATGTGATTTTTCCATTCACATTATCTTCAAAATACACAAAATAGGATAACAAAACAAATAGGTTATTTTTAGAAATCTTCTCGTCAAATCTATGAAATTACACCTGCACTAACAGTCTTCGAGGTAAATTATATTTTTAAAAATTGTTTTTAMCTTTTCTACTAGAGATTAATGTTCTGAATGTTATCTTTAAAAAATTACTCACCACTTGTCGCCTCGGTTTCCGCTGACAGTCTACTATGACTGTGGCTATTGAGTTGTGGCGTCAGAAATGGAATCCTATCATCCATGTGACAATAGGACGATGCTCGAACTCGCATTAACTGGAATAAATGTAATTAAAAAAGGAAACGATGTGTATTTCAAATGGATATAGTTGGAAGAGTGAACCTAATTTTATATAAAAAATATATTCAAAAAATAGGTCAAATAGAAAATTTGAGGAGCATATTTAACAAATGATGACTCATTTTTCCATGTGTTCCAAAAAACTTTCGTAGGGGAAAAAGTTGAGAAGGCTGAGAAAAAGAAGAGTCAAAAGTTTAATTTTCGAAAGTTTCATTTCATTTCCCAACATTTTCTTTTGTTTAACGTAATCTTCAAAACGTTTTGGGCTTTTTTGTTTGTCTTGACACCTATAAAATGGAAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCATTCACATTATCTTCAAA</pcr_primer_p1>
		<pcr_primer_p2>AACTCAATAGCCACAGTCATAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCCATTCACATTATCTTCAAAATACACAAAATAGGATAACAAAACAAATAGGTTATTTTTAGAAATCTTCTCGTCAAATCTATGAAATTACACCTGCACTAACAGTCTTCGAGGTAAATTATATTTTTAAAAATTGTTTTTACCTTTTCTACTAGAGATTAATGTTCTGAATGTTATCTTTAAAAAATTACTCACCACTTGTCGCCTCGGTTTCCGCTGACAGTCTACTATGACTGTGGCTATTGAGTT</canonical_amplicon>
		<polymorphic_amplicon>TTCCATTCACATTATCTTCAAAATACACAAAATAGGATAACAAAACAAATAGGTTATTTTTAGAAATCTTCTCGTCAAATCTATGAAATTACACCTGCACTAACAGTCTTCGAGGTAAATTATATTTTTAAAAATTGTTTTTAMCTTTTCTACTAGAGATTAATGTTCTGAATGTTATCTTTAAAAAATTACTCACCACTTGTCGCCTCGGTTTCCGCTGACAGTCTACTATGACTGTGGCTATTGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11314</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>23316</contig_pos>
        <strand>+</strand>
        <context>GAAATCTTCT[A/C]GTCAAATCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATACACAAAATAGGATAACAAAACAAATAGGTTATTTTTAGAAATCTTCT</left_flank>
        <right_flank>GTCAAATCTATGAAATTACACCTGCACTAACAGTCTTCGAGGTAAATTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATGGCATTGGTGTTGTTATTGATTCTGGTTTGAATGGAAAAGTAAATTTTCATGCTGGTTTGAGCGAAAGCACAATCAAAGCTCTCGCTGAAAAATGAAGTACTCCATTTCAAAAATTTTTTAAAGTTTCCAAAAAACTTCCAGTTTTTCAATATTTCGAAGAACACAAAAGTTTCTGTAACTTCGAAATTGAGTTATTACGAACGAACTCAAATATTACCTTTTTCGCCTACCCTCCAAACAACTTCGAAATACTTTTTGATTTACAGATAAGTTTTTCGTTTTCAGATTCTTTTCTTATTTTTACTGGGAATTCAACCAGGAAATTCTCCAAACATCACATTCTTTGTAGCTCGCAAAGAAAATTTTTATGGCAACAATTCAATTTTTGGTAAAACAAAAATCGTGGTGAAAATGTGATTTTTCCATTCACATTATCTTCAAAATACACAAAATAGGATAACAAAACAAATAGGTTATTTTTAGAAATCTTCTCGTCAAATCTATGAAATTACACCTGCACTAACAGTCTTCGAGGTAAATTATATTTTTAAAAATTGTTTTTACCTTTTCTACTAGAGATTAATGTTCTGAATGTTATCTTTAAAAAATTACTCACCACTTGTCGCCTCGGTTTCCGCTGACAGTCTACTATGACTGTGGCTATTGAGTTGTGGCGTCAGAAATGGAATCCTATCATCCATGTGACAATAGGACGATGCTCGAACTCGCATTAACTGGAATAAATGTAATTAAAAAAGGAAACGATGTGTATTTCAAATGGATATAGTTGGAAGAGTGAACCTAATTTTATATAAAAAATATATTCAAAAAATAGGTCAAATAGAAAATTTGAGGAGCATATTTAACAAATGATGACTCATTTTTCCATGTGTTCCAAAAAACTTTCGTAGGGGAAAAAGTTGAGAAGGCTGAGAAAAAGAAGAGTCAAAAGTTTAATTTTCGAAAGTTTCATTTCATTTCCCAACATTTTCT</canonical>
            <polymorphic>AAAAATGGCATTGGTGTTGTTATTGATTCTGGTTTGAATGGAAAAGTAAATTTTCATGCTGGTTTGAGCGAAAGCACAATCAAAGCTCTCGCTGAAAAATGAAGTACTCCATTTCAAAAATTTTTTAAAGTTTCCAAAAAACTTCCAGTTTTTCAATATTTCGAAGAACACAAAAGTTTCTGTAACTTCGAAATTGAGTTATTACGAACGAACTCAAATATTACCTTTTTCGCCTACCCTCCAAACAACTTCGAAATACTTTTTGATTTACAGATAAGTTTTTCGTTTTCAGATTCTTTTCTTATTTTTACTGGGAATTCAACCAGGAAATTCTCCAAACATCACATTCTTTGTAGCTCGCAAAGAAAATTTTTATGGCAACAATTCAATTTTTGGTAAAACAAAAATCGTGGTGAAAATGTGATTTTTCCATTCACATTATCTTCAAAATACACAAAATAGGATAACAAAACAAATAGGTTATTTTTAGAAATCTTCTMGTCAAATCTATGAAATTACACCTGCACTAACAGTCTTCGAGGTAAATTATATTTTTAAAAATTGTTTTTACCTTTTCTACTAGAGATTAATGTTCTGAATGTTATCTTTAAAAAATTACTCACCACTTGTCGCCTCGGTTTCCGCTGACAGTCTACTATGACTGTGGCTATTGAGTTGTGGCGTCAGAAATGGAATCCTATCATCCATGTGACAATAGGACGATGCTCGAACTCGCATTAACTGGAATAAATGTAATTAAAAAAGGAAACGATGTGTATTTCAAATGGATATAGTTGGAAGAGTGAACCTAATTTTATATAAAAAATATATTCAAAAAATAGGTCAAATAGAAAATTTGAGGAGCATATTTAACAAATGATGACTCATTTTTCCATGTGTTCCAAAAAACTTTCGTAGGGGAAAAAGTTGAGAAGGCTGAGAAAAAGAAGAGTCAAAAGTTTAATTTTCGAAAGTTTCATTTCATTTCCCAACATTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCATTCACATTATCTTCAAA</pcr_primer_p1>
		<pcr_primer_p2>AACTCAATAGCCACAGTCATAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCCATTCACATTATCTTCAAAATACACAAAATAGGATAACAAAACAAATAGGTTATTTTTAGAAATCTTCTCGTCAAATCTATGAAATTACACCTGCACTAACAGTCTTCGAGGTAAATTATATTTTTAAAAATTGTTTTTACCTTTTCTACTAGAGATTAATGTTCTGAATGTTATCTTTAAAAAATTACTCACCACTTGTCGCCTCGGTTTCCGCTGACAGTCTACTATGACTGTGGCTATTGAGTT</canonical_amplicon>
		<polymorphic_amplicon>TTCCATTCACATTATCTTCAAAATACACAAAATAGGATAACAAAACAAATAGGTTATTTTTAGAAATCTTCTMGTCAAATCTATGAAATTACACCTGCACTAACAGTCTTCGAGGTAAATTATATTTTTAAAAATTGTTTTTACCTTTTCTACTAGAGATTAATGTTCTGAATGTTATCTTTAAAAAATTACTCACCACTTGTCGCCTCGGTTTCCGCTGACAGTCTACTATGACTGTGGCTATTGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11315</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>23271</contig_pos>
        <strand>+</strand>
        <context>TCAAAATACA[C/T]AAAATAGGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATCGTGGTGAAAATGTGATTTTTCCATTCACATTATCTTCAAAATACA</left_flank>
        <right_flank>AAAATAGGATAACAAAACAAATAGGTTATTTTTAGAAATCTTCTCGTCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATCTGATGAACAGAAATAGTGCTTTGGGTATCAGGAATAGAAGAAAAATGGCATTGGTGTTGTTATTGATTCTGGTTTGAATGGAAAAGTAAATTTTCATGCTGGTTTGAGCGAAAGCACAATCAAAGCTCTCGCTGAAAAATGAAGTACTCCATTTCAAAAATTTTTTAAAGTTTCCAAAAAACTTCCAGTTTTTCAATATTTCGAAGAACACAAAAGTTTCTGTAACTTCGAAATTGAGTTATTACGAACGAACTCAAATATTACCTTTTTCGCCTACCCTCCAAACAACTTCGAAATACTTTTTGATTTACAGATAAGTTTTTCGTTTTCAGATTCTTTTCTTATTTTTACTGGGAATTCAACCAGGAAATTCTCCAAACATCACATTCTTTGTAGCTCGCAAAGAAAATTTTTATGGCAACAATTCAATTTTTGGTAAAACAAAAATCGTGGTGAAAATGTGATTTTTCCATTCACATTATCTTCAAAATACACAAAATAGGATAACAAAACAAATAGGTTATTTTTAGAAATCTTCTCGTCAAATCTATGAAATTACACCTGCACTAACAGTCTTCGAGGTAAATTATATTTTTAAAAATTGTTTTTACCTTTTCTACTAGAGATTAATGTTCTGAATGTTATCTTTAAAAAATTACTCACCACTTGTCGCCTCGGTTTCCGCTGACAGTCTACTATGACTGTGGCTATTGAGTTGTGGCGTCAGAAATGGAATCCTATCATCCATGTGACAATAGGACGATGCTCGAACTCGCATTAACTGGAATAAATGTAATTAAAAAAGGAAACGATGTGTATTTCAAATGGATATAGTTGGAAGAGTGAACCTAATTTTATATAAAAAATATATTCAAAAAATAGGTCAAATAGAAAATTTGAGGAGCATATTTAACAAATGATGACTCATTTTTCCATGTGTTCCAAAAAACTTTCGTAGGGGAAAAAGTTGAGAAGGCTGAGAAAAAGAAGAGTCA</canonical>
            <polymorphic>ATATCTGATGAACAGAAATAGTGCTTTGGGTATCAGGAATAGAAGAAAAATGGCATTGGTGTTGTTATTGATTCTGGTTTGAATGGAAAAGTAAATTTTCATGCTGGTTTGAGCGAAAGCACAATCAAAGCTCTCGCTGAAAAATGAAGTACTCCATTTCAAAAATTTTTTAAAGTTTCCAAAAAACTTCCAGTTTTTCAATATTTCGAAGAACACAAAAGTTTCTGTAACTTCGAAATTGAGTTATTACGAACGAACTCAAATATTACCTTTTTCGCCTACCCTCCAAACAACTTCGAAATACTTTTTGATTTACAGATAAGTTTTTCGTTTTCAGATTCTTTTCTTATTTTTACTGGGAATTCAACCAGGAAATTCTCCAAACATCACATTCTTTGTAGCTCGCAAAGAAAATTTTTATGGCAACAATTCAATTTTTGGTAAAACAAAAATCGTGGTGAAAATGTGATTTTTCCATTCACATTATCTTCAAAATACAYAAAATAGGATAACAAAACAAATAGGTTATTTTTAGAAATCTTCTCGTCAAATCTATGAAATTACACCTGCACTAACAGTCTTCGAGGTAAATTATATTTTTAAAAATTGTTTTTACCTTTTCTACTAGAGATTAATGTTCTGAATGTTATCTTTAAAAAATTACTCACCACTTGTCGCCTCGGTTTCCGCTGACAGTCTACTATGACTGTGGCTATTGAGTTGTGGCGTCAGAAATGGAATCCTATCATCCATGTGACAATAGGACGATGCTCGAACTCGCATTAACTGGAATAAATGTAATTAAAAAAGGAAACGATGTGTATTTCAAATGGATATAGTTGGAAGAGTGAACCTAATTTTATATAAAAAATATATTCAAAAAATAGGTCAAATAGAAAATTTGAGGAGCATATTTAACAAATGATGACTCATTTTTCCATGTGTTCCAAAAAACTTTCGTAGGGGAAAAAGTTGAGAAGGCTGAGAAAAAGAAGAGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>174 96 94 94 68 66 65 60 56 41 38 31 29 23 18 14 13 8 6 3 3</canonical_bands>
                <polymorphic_bands>174 96 94 94 84 68 65 60 56 41 38 31 29 23 14 13 8 6 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTTTTCGTTTTCAGATTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TGCAGGTGTAATTTCATAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTTTTTCGTTTTCAGATTCTTTTCTTATTTTTACTGGGAATTCAACCAGGAAATTCTCCAAACATCACATTCTTTGTAGCTCGCAAAGAAAATTTTTATGGCAACAATTCAATTTTTGGTAAAACAAAAATCGTGGTGAAAATGTGATTTTTCCATTCACATTATCTTCAAAATACACAAAATAGGATAACAAAACAAATAGGTTATTTTTAGAAATCTTCTCGTCAAATCTATGAAATTACACCTGCA</canonical_amplicon>
		<polymorphic_amplicon>AGTTTTTCGTTTTCAGATTCTTTTCTTATTTTTACTGGGAATTCAACCAGGAAATTCTCCAAACATCACATTCTTTGTAGCTCGCAAAGAAAATTTTTATGGCAACAATTCAATTTTTGGTAAAACAAAAATCGTGGTGAAAATGTGATTTTTCCATTCACATTATCTTCAAAATACAYAAAATAGGATAACAAAACAAATAGGTTATTTTTAGAAATCTTCTCGTCAAATCTATGAAATTACACCTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11316</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>23125</contig_pos>
        <strand>+</strand>
        <context>TTCTTATTTT[G/T]ACTGGGAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTTTTGATTTACAGATAAGTTTTTCGTTTTCAGATTCTTTTCTTATTTT</left_flank>
        <right_flank>ACTGGGAATTCAACCAGGAAATTCTCCAAACATCACATTCTTTGTAGCTC</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCTTCACGTATGAATGAAGAGAAGAAAGAATGAGGCGGAACCTAAAAATTTTATGTACTGGCTCATGATGATCAAAAAGTCATTGTGTAAGAACATAAATTAGTAGTGCAGACAAAGAAAAGAGCGTATGCGTGTTTTGTCTGAATATCTGATGAACAGAAATAGTGCTTTGGGTATCAGGAATAGAAGAAAAATGGCATTGGTGTTGTTATTGATTCTGGTTTGAATGGAAAAGTAAATTTTCATGCTGGTTTGAGCGAAAGCACAATCAAAGCTCTCGCTGAAAAATGAAGTACTCCATTTCAAAAATTTTTTAAAGTTTCCAAAAAACTTCCAGTTTTTCAATATTTCGAAGAACACAAAAGTTTCTGTAACTTCGAAATTGAGTTATTACGAACGAACTCAAATATTACCTTTTTCGCCTACCCTCCAAACAACTTCGAAATACTTTTTGATTTACAGATAAGTTTTTCGTTTTCAGATTCTTTTCTTATTTTTACTGGGAATTCAACCAGGAAATTCTCCAAACATCACATTCTTTGTAGCTCGCAAAGAAAATTTTTATGGCAACAATTCAATTTTTGGTAAAACAAAAATCGTGGTGAAAATGTGATTTTTCCATTCACATTATCTTCAAAATACACAAAATAGGATAACAAAACAAATAGGTTATTTTTAGAAATCTTCTCGTCAAATCTATGAAATTACACCTGCACTAACAGTCTTCGAGGTAAATTATATTTTTAAAAATTGTTTTTACCTTTTCTACTAGAGATTAATGTTCTGAATGTTATCTTTAAAAAATTACTCACCACTTGTCGCCTCGGTTTCCGCTGACAGTCTACTATGACTGTGGCTATTGAGTTGTGGCGTCAGAAATGGAATCCTATCATCCATGTGACAATAGGACGATGCTCGAACTCGCATTAACTGGAATAAATGTAATTAAAAAAGGAAACGATGTGTATTTCAAATGGATATAGTTGGAAGAGTGAACC</canonical>
            <polymorphic>TGGCTTCACGTATGAATGAAGAGAAGAAAGAATGAGGCGGAACCTAAAAATTTTATGTACTGGCTCATGATGATCAAAAAGTCATTGTGTAAGAACATAAATTAGTAGTGCAGACAAAGAAAAGAGCGTATGCGTGTTTTGTCTGAATATCTGATGAACAGAAATAGTGCTTTGGGTATCAGGAATAGAAGAAAAATGGCATTGGTGTTGTTATTGATTCTGGTTTGAATGGAAAAGTAAATTTTCATGCTGGTTTGAGCGAAAGCACAATCAAAGCTCTCGCTGAAAAATGAAGTACTCCATTTCAAAAATTTTTTAAAGTTTCCAAAAAACTTCCAGTTTTTCAATATTTCGAAGAACACAAAAGTTTCTGTAACTTCGAAATTGAGTTATTACGAACGAACTCAAATATTACCTTTTTCGCCTACCCTCCAAACAACTTCGAAATACTTTTTGATTTACAGATAAGTTTTTCGTTTTCAGATTCTTTTCTTATTTTKACTGGGAATTCAACCAGGAAATTCTCCAAACATCACATTCTTTGTAGCTCGCAAAGAAAATTTTTATGGCAACAATTCAATTTTTGGTAAAACAAAAATCGTGGTGAAAATGTGATTTTTCCATTCACATTATCTTCAAAATACACAAAATAGGATAACAAAACAAATAGGTTATTTTTAGAAATCTTCTCGTCAAATCTATGAAATTACACCTGCACTAACAGTCTTCGAGGTAAATTATATTTTTAAAAATTGTTTTTACCTTTTCTACTAGAGATTAATGTTCTGAATGTTATCTTTAAAAAATTACTCACCACTTGTCGCCTCGGTTTCCGCTGACAGTCTACTATGACTGTGGCTATTGAGTTGTGGCGTCAGAAATGGAATCCTATCATCCATGTGACAATAGGACGATGCTCGAACTCGCATTAACTGGAATAAATGTAATTAAAAAAGGAAACGATGTGTATTTCAAATGGATATAGTTGGAAGAGTGAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTTATTACGAACGAACTCAAA</pcr_primer_p1>
		<pcr_primer_p2>AGATAATGTGAATGGAAAAATCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAGTTATTACGAACGAACTCAAATATTACCTTTTTCGCCTACCCTCCAAACAACTTCGAAATACTTTTTGATTTACAGATAAGTTTTTCGTTTTCAGATTCTTTTCTTATTTTTACTGGGAATTCAACCAGGAAATTCTCCAAACATCACATTCTTTGTAGCTCGCAAAGAAAATTTTTATGGCAACAATTCAATTTTTGGTAAAACAAAAATCGTGGTGAAAATGTGATTTTTCCATTCACATTATCT</canonical_amplicon>
		<polymorphic_amplicon>GAGTTATTACGAACGAACTCAAATATTACCTTTTTCGCCTACCCTCCAAACAACTTCGAAATACTTTTTGATTTACAGATAAGTTTTTCGTTTTCAGATTCTTTTCTTATTTTKACTGGGAATTCAACCAGGAAATTCTCCAAACATCACATTCTTTGTAGCTCGCAAAGAAAATTTTTATGGCAACAATTCAATTTTTGGTAAAACAAAAATCGTGGTGAAAATGTGATTTTTCCATTCACATTATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11317</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>75832</contig_pos>
        <strand>+</strand>
        <context>AATCGGGTTC[A/T]CCTTTGCTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCATGAAGTTGTCACTGGTTTTCTTCGTTCTTCTGGCTTTAATCGGGTTC</left_flank>
        <right_flank>CCTTTGCTTCCAAATGCGATTCCTGTAAGGCATCGGTCAAGGATATCAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTAGAATCTTTTTCTGAATTAAAGAACCTTAATTCCAAAACACTTACCAAATAAGCAGTAACCTCTGCCCAGCTATTCGGAACCTTCTCTTCCCACTTCTTATTGCACATTGTACAAAACTGGCCTTGTGCCTCCTCAAGATCCGTTGCCAGAGCGCTAGCGACCAAAAATGAAATAAGGATAAAGTACTTCATGGCGATAATACTGATAGTTGAGAAGAACTGATAGTGGGTATGGGGGAAGTGATAAGGCCAAAAGCTACATAAATTTGAAATTCAAATTCAAATAATTGAATATTCAATAGATTGATCAAACCAAAATGCTAATTTTATCTGTAAGTAAGAAGAGAAACAAAGAAATAATGTTAGCGAGAGTACATTTTCTTGAGAAACTTCTCATGGTGCTCATCTATAAAAAGAAAAAAGCTTGTTCAATTTCAACAACAAATCATGAAGTTGTCACTGGTTTTCTTCGTTCTTCTGGCTTTAATCGGGTTCACCTTTGCTTCCAAATGCGATTCCTGTAAGGCATCGGTCAAGGATATCAAGGATGGAAAGGGTCTCGCTTATATGGCCAATTTGACTACCAAGCAAATCGAGGACTATGTCACCAAGAATGTCAACGTAGGTGTATATTTTAGAAGTATGTTTTTTAATCATATTTTTCAGCAAAACTGCACCGGCTCCGACTGCGCAAAGCTCATCAGGAGCCTCATTGAGATCGCTGACCAACTCGACGATGACTTGGATGCCACTCCAGAGGAGCTCTGTAAATTTGTTTACTTCTGCTAACTTGGTGTTTAATTTCAAGAATTTTTGAAATTTTAAAGGCAATAAATGTATTCAAAGCATGTGAAAATTTCTAGTTCACGAATTCCGGTGCCGGTGGAATCGTTTTCTGCTTATCCGTATTCTGAAAACTTTGGTATAATCAGAGGATGACAAAATTGAAAATCACATTGTATTCTGAAAAATATACATTCATCTCGTTTTTCTTTC</canonical>
            <polymorphic>AATTAGAATCTTTTTCTGAATTAAAGAACCTTAATTCCAAAACACTTACCAAATAAGCAGTAACCTCTGCCCAGCTATTCGGAACCTTCTCTTCCCACTTCTTATTGCACATTGTACAAAACTGGCCTTGTGCCTCCTCAAGATCCGTTGCCAGAGCGCTAGCGACCAAAAATGAAATAAGGATAAAGTACTTCATGGCGATAATACTGATAGTTGAGAAGAACTGATAGTGGGTATGGGGGAAGTGATAAGGCCAAAAGCTACATAAATTTGAAATTCAAATTCAAATAATTGAATATTCAATAGATTGATCAAACCAAAATGCTAATTTTATCTGTAAGTAAGAAGAGAAACAAAGAAATAATGTTAGCGAGAGTACATTTTCTTGAGAAACTTCTCATGGTGCTCATCTATAAAAAGAAAAAAGCTTGTTCAATTTCAACAACAAATCATGAAGTTGTCACTGGTTTTCTTCGTTCTTCTGGCTTTAATCGGGTTCWCCTTTGCTTCCAAATGCGATTCCTGTAAGGCATCGGTCAAGGATATCAAGGATGGAAAGGGTCTCGCTTATATGGCCAATTTGACTACCAAGCAAATCGAGGACTATGTCACCAAGAATGTCAACGTAGGTGTATATTTTAGAAGTATGTTTTTTAATCATATTTTTCAGCAAAACTGCACCGGCTCCGACTGCGCAAAGCTCATCAGGAGCCTCATTGAGATCGCTGACCAACTCGACGATGACTTGGATGCCACTCCAGAGGAGCTCTGTAAATTTGTTTACTTCTGCTAACTTGGTGTTTAATTTCAAGAATTTTTGAAATTTTAAAGGCAATAAATGTATTCAAAGCATGTGAAAATTTCTAGTTCACGAATTCCGGTGCCGGTGGAATCGTTTTCTGCTTATCCGTATTCTGAAAACTTTGGTATAATCAGAGGATGACAAAATTGAAAATCACATTGTATTCTGAAAAATATACATTCATCTCGTTTTTCTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>158 111 100 75 69 58 56 53 48 45 44 42 37 23 21 15 15 12 12 6</canonical_bands>
                <polymorphic_bands>158 148 100 75 69 58 56 53 48 45 44 42 23 21 15 15 12 12 6</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 159 131 124 88</canonical_bands>
                <polymorphic_bands>622 159 131 88</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCAATTTCAACAACAAATCAT</pcr_primer_p1>
		<pcr_primer_p2>GTTTTGCTGAAAAATATGATTAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTCAATTTCAACAACAAATCATGAAGTTGTCACTGGTTTTCTTCGTTCTTCTGGCTTTAATCGGGTTCACCTTTGCTTCCAAATGCGATTCCTGTAAGGCATCGGTCAAGGATATCAAGGATGGAAAGGGTCTCGCTTATATGGCCAATTTGACTACCAAGCAAATCGAGGACTATGTCACCAAGAATGTCAACGTAGGTGTATATTTTAGAAGTATGTTTTTTAATCATATTTTTCAGCAAAAC</canonical_amplicon>
		<polymorphic_amplicon>GTTCAATTTCAACAACAAATCATGAAGTTGTCACTGGTTTTCTTCGTTCTTCTGGCTTTAATCGGGTTCWCCTTTGCTTCCAAATGCGATTCCTGTAAGGCATCGGTCAAGGATATCAAGGATGGAAAGGGTCTCGCTTATATGGCCAATTTGACTACCAAGCAAATCGAGGACTATGTCACCAAGAATGTCAACGTAGGTGTATATTTTAGAAGTATGTTTTTTAATCATATTTTTCAGCAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11318</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>75757</contig_pos>
        <strand>+</strand>
        <context>AAAAAGRAAA[A/C]AGCTTGTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTACATTTTCTTGAGAAACTTCTCATGGTGCTCATCTATAAAAAGAAAA</left_flank>
        <right_flank>AGCTTGTTCAATTTCAACAACAAATCATGAAGTTGTCACTGGTTTTCTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACATGCGAGGTTCTGGAAAAAAGACTAACTGCAAGCTTGCTGTTCATAATTTTAAAAGTCTAGGAACGTTCTAATTAGAATCTTTTTCTGAATTAAAGAACCTTAATTCCAAAACACTTACCAAATAAGCAGTAACCTCTGCCCAGCTATTCGGAACCTTCTCTTCCCACTTCTTATTGCACATTGTACAAAACTGGCCTTGTGCCTCCTCAAGATCCGTTGCCAGAGCGCTAGCGACCAAAAATGAAATAAGGATAAAGTACTTCATGGCGATAATACTGATAGTTGAGAAGAACTGATAGTGGGTATGGGGGAAGTGATAAGGCCAAAAGCTACATAAATTTGAAATTCAAATTCAAATAATTGAATATTCAATAGATTGATCAAACCAAAATGCTAATTTTATCTGTAAGTAAGAAGAGAAACAAAGAAATAATGTTAGCGAGAGTACATTTTCTTGAGAAACTTCTCATGGTGCTCATCTATAAAAAGAAAAAAGCTTGTTCAATTTCAACAACAAATCATGAAGTTGTCACTGGTTTTCTTCGTTCTTCTGGCTTTAATCGGGTTCACCTTTGCTTCCAAATGCGATTCCTGTAAGGCATCGGTCAAGGATATCAAGGATGGAAAGGGTCTCGCTTATATGGCCAATTTGACTACCAAGCAAATCGAGGACTATGTCACCAAGAATGTCAACGTAGGTGTATATTTTAGAAGTATGTTTTTTAATCATATTTTTCAGCAAAACTGCACCGGCTCCGACTGCGCAAAGCTCATCAGGAGCCTCATTGAGATCGCTGACCAACTCGACGATGACTTGGATGCCACTCCAGAGGAGCTCTGTAAATTTGTTTACTTCTGCTAACTTGGTGTTTAATTTCAAGAATTTTTGAAATTTTAAAGGCAATAAATGTATTCAAAGCATGTGAAAATTTCTAGTTCACGAATTCCGGTGCCGGTGGAATCGTTTTCTGCTTATCCGTATTCTGAAAACTTT</canonical>
            <polymorphic>AAAACATGCGAGGTTCTGGAAAAAAGACTAACTGCAAGCTTGCTGTTCATAATTTTAAAAGTCTAGGAACGTTCTAATTAGAATCTTTTTCTGAATTAAAGAACCTTAATTCCAAAACACTTACCAAATAAGCAGTAACCTCTGCCCAGCTATTCGGAACCTTCTCTTCCCACTTCTTATTGCACATTGTACAAAACTGGCCTTGTGCCTCCTCAAGATCCGTTGCCAGAGCGCTAGCGACCAAAAATGAAATAAGGATAAAGTACTTCATGGCGATAATACTGATAGTTGAGAAGAACTGATAGTGGGTATGGGGGAAGTGATAAGGCCAAAAGCTACATAAATTTGAAATTCAAATTCAAATAATTGAATATTCAATAGATTGATCAAACCAAAATGCTAATTTTATCTGTAAGTAAGAAGAGAAACAAAGAAATAATGTTAGCGAGAGTACATTTTCTTGAGAAACTTCTCATGGTGCTCATCTATAAAAAGAAAAMAGCTTGTTCAATTTCAACAACAAATCATGAAGTTGTCACTGGTTTTCTTCGTTCTTCTGGCTTTAATCGGGTTCACCTTTGCTTCCAAATGCGATTCCTGTAAGGCATCGGTCAAGGATATCAAGGATGGAAAGGGTCTCGCTTATATGGCCAATTTGACTACCAAGCAAATCGAGGACTATGTCACCAAGAATGTCAACGTAGGTGTATATTTTAGAAGTATGTTTTTTAATCATATTTTTCAGCAAAACTGCACCGGCTCCGACTGCGCAAAGCTCATCAGGAGCCTCATTGAGATCGCTGACCAACTCGACGATGACTTGGATGCCACTCCAGAGGAGCTCTGTAAATTTGTTTACTTCTGCTAACTTGGTGTTTAATTTCAAGAATTTTTGAAATTTTAAAGGCAATAAATGTATTCAAAGCATGTGAAAATTTCTAGTTCACGAATTCCGGTGCCGGTGGAATCGTTTTCTGCTTATCCGTATTCTGAAAACTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 464 36</canonical_bands>
                <polymorphic_bands>964 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGCGAGAGTACATTTTCTTGAG</pcr_primer_p1>
		<pcr_primer_p2>ACATTCTTGGTGACATAGTCCT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TAGCGAGAGTACATTTTCTTGAGAAACTTCTCATGGTGCTCATCTATAAAAAGAAAAAAGCTTGTTCAATTTCAACAACAAATCATGAAGTTGTCACTGGTTTTCTTCGTTCTTCTGGCTTTAATCGGGTTCACCTTTGCTTCCAAATGCGATTCCTGTAAGGCATCGGTCAAGGATATCAAGGATGGAAAGGGTCTCGCTTATATGGCCAATTTGACTACCAAGCAAATCGAGGACTATGTCACCAAGAATGT</canonical_amplicon>
		<polymorphic_amplicon>TAGCGAGAGTACATTTTCTTGAGAAACTTCTCATGGTGCTCATCTATAAAAAGAAAAMAGCTTGTTCAATTTCAACAACAAATCATGAAGTTGTCACTGGTTTTCTTCGTTCTTCTGGCTTTAATCGGGTTCACCTTTGCTTCCAAATGCGATTCCTGTAAGGCATCGGTCAAGGATATCAAGGATGGAAAGGGTCTCGCTTATATGGCCAATTTGACTACCAAGCAAATCGAGGACTATGTCACCAAGAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11319</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>75753</contig_pos>
        <strand>+</strand>
        <context>CTATAAAAAG[A/G]AAAMAGCTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAGAGTACATTTTCTTGAGAAACTTCTCATGGTGCTCATCTATAAAAAG</left_flank>
        <right_flank>AAAAAGCTTGTTCAATTTCAACAACAAATCATGAAGTTGTCACTGGTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGAAAACATGCGAGGTTCTGGAAAAAAGACTAACTGCAAGCTTGCTGTTCATAATTTTAAAAGTCTAGGAACGTTCTAATTAGAATCTTTTTCTGAATTAAAGAACCTTAATTCCAAAACACTTACCAAATAAGCAGTAACCTCTGCCCAGCTATTCGGAACCTTCTCTTCCCACTTCTTATTGCACATTGTACAAAACTGGCCTTGTGCCTCCTCAAGATCCGTTGCCAGAGCGCTAGCGACCAAAAATGAAATAAGGATAAAGTACTTCATGGCGATAATACTGATAGTTGAGAAGAACTGATAGTGGGTATGGGGGAAGTGATAAGGCCAAAAGCTACATAAATTTGAAATTCAAATTCAAATAATTGAATATTCAATAGATTGATCAAACCAAAATGCTAATTTTATCTGTAAGTAAGAAGAGAAACAAAGAAATAATGTTAGCGAGAGTACATTTTCTTGAGAAACTTCTCATGGTGCTCATCTATAAAAAGAAAAAAGCTTGTTCAATTTCAACAACAAATCATGAAGTTGTCACTGGTTTTCTTCGTTCTTCTGGCTTTAATCGGGTTCACCTTTGCTTCCAAATGCGATTCCTGTAAGGCATCGGTCAAGGATATCAAGGATGGAAAGGGTCTCGCTTATATGGCCAATTTGACTACCAAGCAAATCGAGGACTATGTCACCAAGAATGTCAACGTAGGTGTATATTTTAGAAGTATGTTTTTTAATCATATTTTTCAGCAAAACTGCACCGGCTCCGACTGCGCAAAGCTCATCAGGAGCCTCATTGAGATCGCTGACCAACTCGACGATGACTTGGATGCCACTCCAGAGGAGCTCTGTAAATTTGTTTACTTCTGCTAACTTGGTGTTTAATTTCAAGAATTTTTGAAATTTTAAAGGCAATAAATGTATTCAAAGCATGTGAAAATTTCTAGTTCACGAATTCCGGTGCCGGTGGAATCGTTTTCTGCTTATCCGTATTCTGAAAA</canonical>
            <polymorphic>GTTGAAAACATGCGAGGTTCTGGAAAAAAGACTAACTGCAAGCTTGCTGTTCATAATTTTAAAAGTCTAGGAACGTTCTAATTAGAATCTTTTTCTGAATTAAAGAACCTTAATTCCAAAACACTTACCAAATAAGCAGTAACCTCTGCCCAGCTATTCGGAACCTTCTCTTCCCACTTCTTATTGCACATTGTACAAAACTGGCCTTGTGCCTCCTCAAGATCCGTTGCCAGAGCGCTAGCGACCAAAAATGAAATAAGGATAAAGTACTTCATGGCGATAATACTGATAGTTGAGAAGAACTGATAGTGGGTATGGGGGAAGTGATAAGGCCAAAAGCTACATAAATTTGAAATTCAAATTCAAATAATTGAATATTCAATAGATTGATCAAACCAAAATGCTAATTTTATCTGTAAGTAAGAAGAGAAACAAAGAAATAATGTTAGCGAGAGTACATTTTCTTGAGAAACTTCTCATGGTGCTCATCTATAAAAAGRAAAAAGCTTGTTCAATTTCAACAACAAATCATGAAGTTGTCACTGGTTTTCTTCGTTCTTCTGGCTTTAATCGGGTTCACCTTTGCTTCCAAATGCGATTCCTGTAAGGCATCGGTCAAGGATATCAAGGATGGAAAGGGTCTCGCTTATATGGCCAATTTGACTACCAAGCAAATCGAGGACTATGTCACCAAGAATGTCAACGTAGGTGTATATTTTAGAAGTATGTTTTTTAATCATATTTTTCAGCAAAACTGCACCGGCTCCGACTGCGCAAAGCTCATCAGGAGCCTCATTGAGATCGCTGACCAACTCGACGATGACTTGGATGCCACTCCAGAGGAGCTCTGTAAATTTGTTTACTTCTGCTAACTTGGTGTTTAATTTCAAGAATTTTTGAAATTTTAAAGGCAATAAATGTATTCAAAGCATGTGAAAATTTCTAGTTCACGAATTCCGGTGCCGGTGGAATCGTTTTCTGCTTATCCGTATTCTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGCGAGAGTACATTTTCTTGAG</pcr_primer_p1>
		<pcr_primer_p2>ACATTCTTGGTGACATAGTCCT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TAGCGAGAGTACATTTTCTTGAGAAACTTCTCATGGTGCTCATCTATAAAAAGAAAAAAGCTTGTTCAATTTCAACAACAAATCATGAAGTTGTCACTGGTTTTCTTCGTTCTTCTGGCTTTAATCGGGTTCACCTTTGCTTCCAAATGCGATTCCTGTAAGGCATCGGTCAAGGATATCAAGGATGGAAAGGGTCTCGCTTATATGGCCAATTTGACTACCAAGCAAATCGAGGACTATGTCACCAAGAATGT</canonical_amplicon>
		<polymorphic_amplicon>TAGCGAGAGTACATTTTCTTGAGAAACTTCTCATGGTGCTCATCTATAAAAAGRAAAAAGCTTGTTCAATTTCAACAACAAATCATGAAGTTGTCACTGGTTTTCTTCGTTCTTCTGGCTTTAATCGGGTTCACCTTTGCTTCCAAATGCGATTCCTGTAAGGCATCGGTCAAGGATATCAAGGATGGAAAGGGTCTCGCTTATATGGCCAATTTGACTACCAAGCAAATCGAGGACTATGTCACCAAGAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11320</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>75735</contig_pos>
        <strand>+</strand>
        <context>ACTTCTCATG[A/G]TGCTCATCTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAAAGAAATAATGTTAGCGAGAGTACATTTTCTTGAGAAACTTCTCATG</left_flank>
        <right_flank>TGCTCATCTATAAAAAGAAAAAAGCTTGTTCAATTTCAACAACAAATCAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTAAGAGTAGCGTGAAGTTGAAAACATGCGAGGTTCTGGAAAAAAGACTAACTGCAAGCTTGCTGTTCATAATTTTAAAAGTCTAGGAACGTTCTAATTAGAATCTTTTTCTGAATTAAAGAACCTTAATTCCAAAACACTTACCAAATAAGCAGTAACCTCTGCCCAGCTATTCGGAACCTTCTCTTCCCACTTCTTATTGCACATTGTACAAAACTGGCCTTGTGCCTCCTCAAGATCCGTTGCCAGAGCGCTAGCGACCAAAAATGAAATAAGGATAAAGTACTTCATGGCGATAATACTGATAGTTGAGAAGAACTGATAGTGGGTATGGGGGAAGTGATAAGGCCAAAAGCTACATAAATTTGAAATTCAAATTCAAATAATTGAATATTCAATAGATTGATCAAACCAAAATGCTAATTTTATCTGTAAGTAAGAAGAGAAACAAAGAAATAATGTTAGCGAGAGTACATTTTCTTGAGAAACTTCTCATGGTGCTCATCTATAAAAAGAAAAAAGCTTGTTCAATTTCAACAACAAATCATGAAGTTGTCACTGGTTTTCTTCGTTCTTCTGGCTTTAATCGGGTTCACCTTTGCTTCCAAATGCGATTCCTGTAAGGCATCGGTCAAGGATATCAAGGATGGAAAGGGTCTCGCTTATATGGCCAATTTGACTACCAAGCAAATCGAGGACTATGTCACCAAGAATGTCAACGTAGGTGTATATTTTAGAAGTATGTTTTTTAATCATATTTTTCAGCAAAACTGCACCGGCTCCGACTGCGCAAAGCTCATCAGGAGCCTCATTGAGATCGCTGACCAACTCGACGATGACTTGGATGCCACTCCAGAGGAGCTCTGTAAATTTGTTTACTTCTGCTAACTTGGTGTTTAATTTCAAGAATTTTTGAAATTTTAAAGGCAATAAATGTATTCAAAGCATGTGAAAATTTCTAGTTCACGAATTCCGGTGCCGGTGGAATCGTTTTCTGC</canonical>
            <polymorphic>GTTTAAGAGTAGCGTGAAGTTGAAAACATGCGAGGTTCTGGAAAAAAGACTAACTGCAAGCTTGCTGTTCATAATTTTAAAAGTCTAGGAACGTTCTAATTAGAATCTTTTTCTGAATTAAAGAACCTTAATTCCAAAACACTTACCAAATAAGCAGTAACCTCTGCCCAGCTATTCGGAACCTTCTCTTCCCACTTCTTATTGCACATTGTACAAAACTGGCCTTGTGCCTCCTCAAGATCCGTTGCCAGAGCGCTAGCGACCAAAAATGAAATAAGGATAAAGTACTTCATGGCGATAATACTGATAGTTGAGAAGAACTGATAGTGGGTATGGGGGAAGTGATAAGGCCAAAAGCTACATAAATTTGAAATTCAAATTCAAATAATTGAATATTCAATAGATTGATCAAACCAAAATGCTAATTTTATCTGTAAGTAAGAAGAGAAACAAAGAAATAATGTTAGCGAGAGTACATTTTCTTGAGAAACTTCTCATGRTGCTCATCTATAAAAAGAAAAAAGCTTGTTCAATTTCAACAACAAATCATGAAGTTGTCACTGGTTTTCTTCGTTCTTCTGGCTTTAATCGGGTTCACCTTTGCTTCCAAATGCGATTCCTGTAAGGCATCGGTCAAGGATATCAAGGATGGAAAGGGTCTCGCTTATATGGCCAATTTGACTACCAAGCAAATCGAGGACTATGTCACCAAGAATGTCAACGTAGGTGTATATTTTAGAAGTATGTTTTTTAATCATATTTTTCAGCAAAACTGCACCGGCTCCGACTGCGCAAAGCTCATCAGGAGCCTCATTGAGATCGCTGACCAACTCGACGATGACTTGGATGCCACTCCAGAGGAGCTCTGTAAATTTGTTTACTTCTGCTAACTTGGTGTTTAATTTCAAGAATTTTTGAAATTTTAAAGGCAATAAATGTATTCAAAGCATGTGAAAATTTCTAGTTCACGAATTCCGGTGCCGGTGGAATCGTTTTCTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>504 361 135</canonical_bands>
                <polymorphic_bands>865 135</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>504 361 135</canonical_bands>
                <polymorphic_bands>865 135</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>158 125 111 100 75 58 56 53 48 45 37 23 21 16 15 15 14 12 12 6</canonical_bands>
                <polymorphic_bands>216 125 111 100 75 56 53 48 45 37 23 21 16 15 15 14 12 12 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAGGCCAAAAGCTACATAAAT</pcr_primer_p1>
		<pcr_primer_p2>TAAAGCCAGAAGAACGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATAAGGCCAAAAGCTACATAAATTTGAAATTCAAATTCAAATAATTGAATATTCAATAGATTGATCAAACCAAAATGCTAATTTTATCTGTAAGTAAGAAGAGAAACAAAGAAATAATGTTAGCGAGAGTACATTTTCTTGAGAAACTTCTCATGGTGCTCATCTATAAAAAGAAAAAAGCTTGTTCAATTTCAACAACAAATCATGAAGTTGTCACTGGTTTTCTTCGTTCTTCTGGCTTTA</canonical_amplicon>
		<polymorphic_amplicon>ATAAGGCCAAAAGCTACATAAATTTGAAATTCAAATTCAAATAATTGAATATTCAATAGATTGATCAAACCAAAATGCTAATTTTATCTGTAAGTAAGAAGAGAAACAAAGAAATAATGTTAGCGAGAGTACATTTTCTTGAGAAACTTCTCATGRTGCTCATCTATAAAAAGAAAAAAGCTTGTTCAATTTCAACAACAAATCATGAAGTTGTCACTGGTTTTCTTCGTTCTTCTGGCTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11321</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>75553</contig_pos>
        <strand>+</strand>
        <context>TAGTTGAGAA[A/G]AACTGATAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGAAATAAGGATAAAGTACTTCATGGCGATAATACTGATAGTTGAGAA</left_flank>
        <right_flank>AACTGATAGTGGGTATGGGGGAAGTGATAAGGCCAAAAGCTACATAAATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAACAACTCTTGAAATTTGTGGAGCCCTTTATTTCTGTTAATTATGTTCCCGAAATGAAGTTGTTAACTTTTCAATTACAATACATATCGCACACAGTGTTTCCAAAATCAATGAGTTGTGGGCGGAAGGTGTCGAAGATTTTCCCAATGTCGAAGTTGTTGACCAGGGCCATACAACGAGGTTTAAGAGTAGCGTGAAGTTGAAAACATGCGAGGTTCTGGAAAAAAGACTAACTGCAAGCTTGCTGTTCATAATTTTAAAAGTCTAGGAACGTTCTAATTAGAATCTTTTTCTGAATTAAAGAACCTTAATTCCAAAACACTTACCAAATAAGCAGTAACCTCTGCCCAGCTATTCGGAACCTTCTCTTCCCACTTCTTATTGCACATTGTACAAAACTGGCCTTGTGCCTCCTCAAGATCCGTTGCCAGAGCGCTAGCGACCAAAAATGAAATAAGGATAAAGTACTTCATGGCGATAATACTGATAGTTGAGAAGAACTGATAGTGGGTATGGGGGAAGTGATAAGGCCAAAAGCTACATAAATTTGAAATTCAAATTCAAATAATTGAATATTCAATAGATTGATCAAACCAAAATGCTAATTTTATCTGTAAGTAAGAAGAGAAACAAAGAAATAATGTTAGCGAGAGTACATTTTCTTGAGAAACTTCTCATGGTGCTCATCTATAAAAAGAAAAAAGCTTGTTCAATTTCAACAACAAATCATGAAGTTGTCACTGGTTTTCTTCGTTCTTCTGGCTTTAATCGGGTTCACCTTTGCTTCCAAATGCGATTCCTGTAAGGCATCGGTCAAGGATATCAAGGATGGAAAGGGTCTCGCTTATATGGCCAATTTGACTACCAAGCAAATCGAGGACTATGTCACCAAGAATGTCAACGTAGGTGTATATTTTAGAAGTATGTTTTTTAATCATATTTTTCAGCAAAACTGCACCGGCTCCGACTGCGCAAAGCTCATCAGGAGCCTCATTGAG</canonical>
            <polymorphic>GCAACAACTCTTGAAATTTGTGGAGCCCTTTATTTCTGTTAATTATGTTCCCGAAATGAAGTTGTTAACTTTTCAATTACAATACATATCGCACACAGTGTTTCCAAAATCAATGAGTTGTGGGCGGAAGGTGTCGAAGATTTTCCCAATGTCGAAGTTGTTGACCAGGGCCATACAACGAGGTTTAAGAGTAGCGTGAAGTTGAAAACATGCGAGGTTCTGGAAAAAAGACTAACTGCAAGCTTGCTGTTCATAATTTTAAAAGTCTAGGAACGTTCTAATTAGAATCTTTTTCTGAATTAAAGAACCTTAATTCCAAAACACTTACCAAATAAGCAGTAACCTCTGCCCAGCTATTCGGAACCTTCTCTTCCCACTTCTTATTGCACATTGTACAAAACTGGCCTTGTGCCTCCTCAAGATCCGTTGCCAGAGCGCTAGCGACCAAAAATGAAATAAGGATAAAGTACTTCATGGCGATAATACTGATAGTTGAGAARAACTGATAGTGGGTATGGGGGAAGTGATAAGGCCAAAAGCTACATAAATTTGAAATTCAAATTCAAATAATTGAATATTCAATAGATTGATCAAACCAAAATGCTAATTTTATCTGTAAGTAAGAAGAGAAACAAAGAAATAATGTTAGCGAGAGTACATTTTCTTGAGAAACTTCTCATGGTGCTCATCTATAAAAAGAAAAAAGCTTGTTCAATTTCAACAACAAATCATGAAGTTGTCACTGGTTTTCTTCGTTCTTCTGGCTTTAATCGGGTTCACCTTTGCTTCCAAATGCGATTCCTGTAAGGCATCGGTCAAGGATATCAAGGATGGAAAGGGTCTCGCTTATATGGCCAATTTGACTACCAAGCAAATCGAGGACTATGTCACCAAGAATGTCAACGTAGGTGTATATTTTAGAAGTATGTTTTTTAATCATATTTTTCAGCAAAACTGCACCGGCTCCGACTGCGCAAAGCTCATCAGGAGCCTCATTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTTCTCTTCCCACTTCTTAT</pcr_primer_p1>
		<pcr_primer_p2>TAAAATTAGCATTTTGGTTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCTTCTCTTCCCACTTCTTATTGCACATTGTACAAAACTGGCCTTGTGCCTCCTCAAGATCCGTTGCCAGAGCGCTAGCGACCAAAAATGAAATAAGGATAAAGTACTTCATGGCGATAATACTGATAGTTGAGAAGAACTGATAGTGGGTATGGGGGAAGTGATAAGGCCAAAAGCTACATAAATTTGAAATTCAAATTCAAATAATTGAATATTCAATAGATTGATCAAACCAAAATGCTAATTTTA</canonical_amplicon>
		<polymorphic_amplicon>ACCTTCTCTTCCCACTTCTTATTGCACATTGTACAAAACTGGCCTTGTGCCTCCTCAAGATCCGTTGCCAGAGCGCTAGCGACCAAAAATGAAATAAGGATAAAGTACTTCATGGCGATAATACTGATAGTTGAGAARAACTGATAGTGGGTATGGGGGAAGTGATAAGGCCAAAAGCTACATAAATTTGAAATTCAAATTCAAATAATTGAATATTCAATAGATTGATCAAACCAAAATGCTAATTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11322</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>75505</contig_pos>
        <strand>+</strand>
        <context>CGACCAAAAA[A/T]GAAATAAGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGGCCTTGTGCCTCCTCAAGATCCGTTGCCAGAGCGCTAGCGACCAAAAA</left_flank>
        <right_flank>GAAATAAGGATAAAGTACTTCATGGCGATAATACTGATAGTTGAGAAGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCCATGTTTCAAACTATTCGCCGAATACTGGCCCGCCGGGATCAACGCAACAACTCTTGAAATTTGTGGAGCCCTTTATTTCTGTTAATTATGTTCCCGAAATGAAGTTGTTAACTTTTCAATTACAATACATATCGCACACAGTGTTTCCAAAATCAATGAGTTGTGGGCGGAAGGTGTCGAAGATTTTCCCAATGTCGAAGTTGTTGACCAGGGCCATACAACGAGGTTTAAGAGTAGCGTGAAGTTGAAAACATGCGAGGTTCTGGAAAAAAGACTAACTGCAAGCTTGCTGTTCATAATTTTAAAAGTCTAGGAACGTTCTAATTAGAATCTTTTTCTGAATTAAAGAACCTTAATTCCAAAACACTTACCAAATAAGCAGTAACCTCTGCCCAGCTATTCGGAACCTTCTCTTCCCACTTCTTATTGCACATTGTACAAAACTGGCCTTGTGCCTCCTCAAGATCCGTTGCCAGAGCGCTAGCGACCAAAAATGAAATAAGGATAAAGTACTTCATGGCGATAATACTGATAGTTGAGAAGAACTGATAGTGGGTATGGGGGAAGTGATAAGGCCAAAAGCTACATAAATTTGAAATTCAAATTCAAATAATTGAATATTCAATAGATTGATCAAACCAAAATGCTAATTTTATCTGTAAGTAAGAAGAGAAACAAAGAAATAATGTTAGCGAGAGTACATTTTCTTGAGAAACTTCTCATGGTGCTCATCTATAAAAAGAAAAAAGCTTGTTCAATTTCAACAACAAATCATGAAGTTGTCACTGGTTTTCTTCGTTCTTCTGGCTTTAATCGGGTTCACCTTTGCTTCCAAATGCGATTCCTGTAAGGCATCGGTCAAGGATATCAAGGATGGAAAGGGTCTCGCTTATATGGCCAATTTGACTACCAAGCAAATCGAGGACTATGTCACCAAGAATGTCAACGTAGGTGTATATTTTAGAAGTATGTTTTTTAATCATATTTTTCAGCAA</canonical>
            <polymorphic>GAGCCATGTTTCAAACTATTCGCCGAATACTGGCCCGCCGGGATCAACGCAACAACTCTTGAAATTTGTGGAGCCCTTTATTTCTGTTAATTATGTTCCCGAAATGAAGTTGTTAACTTTTCAATTACAATACATATCGCACACAGTGTTTCCAAAATCAATGAGTTGTGGGCGGAAGGTGTCGAAGATTTTCCCAATGTCGAAGTTGTTGACCAGGGCCATACAACGAGGTTTAAGAGTAGCGTGAAGTTGAAAACATGCGAGGTTCTGGAAAAAAGACTAACTGCAAGCTTGCTGTTCATAATTTTAAAAGTCTAGGAACGTTCTAATTAGAATCTTTTTCTGAATTAAAGAACCTTAATTCCAAAACACTTACCAAATAAGCAGTAACCTCTGCCCAGCTATTCGGAACCTTCTCTTCCCACTTCTTATTGCACATTGTACAAAACTGGCCTTGTGCCTCCTCAAGATCCGTTGCCAGAGCGCTAGCGACCAAAAAWGAAATAAGGATAAAGTACTTCATGGCGATAATACTGATAGTTGAGAAGAACTGATAGTGGGTATGGGGGAAGTGATAAGGCCAAAAGCTACATAAATTTGAAATTCAAATTCAAATAATTGAATATTCAATAGATTGATCAAACCAAAATGCTAATTTTATCTGTAAGTAAGAAGAGAAACAAAGAAATAATGTTAGCGAGAGTACATTTTCTTGAGAAACTTCTCATGGTGCTCATCTATAAAAAGAAAAAAGCTTGTTCAATTTCAACAACAAATCATGAAGTTGTCACTGGTTTTCTTCGTTCTTCTGGCTTTAATCGGGTTCACCTTTGCTTCCAAATGCGATTCCTGTAAGGCATCGGTCAAGGATATCAAGGATGGAAAGGGTCTCGCTTATATGGCCAATTTGACTACCAAGCAAATCGAGGACTATGTCACCAAGAATGTCAACGTAGGTGTATATTTTAGAAGTATGTTTTTTAATCATATTTTTCAGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTTCTCTTCCCACTTCTTAT</pcr_primer_p1>
		<pcr_primer_p2>TAAAATTAGCATTTTGGTTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCTTCTCTTCCCACTTCTTATTGCACATTGTACAAAACTGGCCTTGTGCCTCCTCAAGATCCGTTGCCAGAGCGCTAGCGACCAAAAATGAAATAAGGATAAAGTACTTCATGGCGATAATACTGATAGTTGAGAAGAACTGATAGTGGGTATGGGGGAAGTGATAAGGCCAAAAGCTACATAAATTTGAAATTCAAATTCAAATAATTGAATATTCAATAGATTGATCAAACCAAAATGCTAATTTTA</canonical_amplicon>
		<polymorphic_amplicon>ACCTTCTCTTCCCACTTCTTATTGCACATTGTACAAAACTGGCCTTGTGCCTCCTCAAGATCCGTTGCCAGAGCGCTAGCGACCAAAAAWGAAATAAGGATAAAGTACTTCATGGCGATAATACTGATAGTTGAGAAGAACTGATAGTGGGTATGGGGGAAGTGATAAGGCCAAAAGCTACATAAATTTGAAATTCAAATTCAAATAATTGAATATTCAATAGATTGATCAAACCAAAATGCTAATTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11323</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>79247</contig_pos>
        <strand>+</strand>
        <context>GTACCTGATA[A/T]ACTCACTGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATATCTGAATTTCCGAGAACTCATCACTTCTTTCAAAAACGTACCTGATA</left_flank>
        <right_flank>ACTCACTGACTTCCAAATCCTCTCCAGCAAACCAAATTGCCATAAACCAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGAAAAATCAAAACACATCCAGCTGGGAAAAAAAGAAGAAATAACGGAAATACTGTTTGAGCAACTAAAGATTTGAATAGTTGATGTTGCATTTCTAAAGTTCGTCTGGAAACTTGGGTCCGAAAATTGAAAGTGATCTCTGTAAAAATTTTCCGAAGCCGGTACCAACAAAATGTGATAATTGAAAAACCAGAAATCTGAAAAGTTGAGATTTAGAAAGATCATACATTTAAGAGATGGTCTCACAATTATAAAATCAATATTCAGGACGAATAAAAAATCAGAAATACTCGGATATTCCAAACTGGTCAATGGATTTATCCGCTGAAAATTAACATTTGTTGGAAGAACTGAAAATAAAATGTACATAGAAAAGTGAAGCTGCGTATGTATACTCCTGGGGATTCAAATTGAAGTTTAGCAGCATAGTATCTCTGAAAAATTAGTCATATCTGAATTTCCGAGAACTCATCACTTCTTTCAAAAACGTACCTGATAAACTCACTGACTTCCAAATCCTCTCCAGCAAACCAAATTGCCATAAACCACCAATTTAGTGCAATTAACAAAAATAGGCCAATGAGCGAAAAATAATTAGGATACGAGAATAAAAGCAGTTTATGCGGCTTACAAACAGCAAGATATCTGTATAGAAAATGAAAAGACAATAGATATAAAGTCATCCCATAGGCAGAACAGTGTAGGGCTGAAATTCTGAAACTTGCTCAGACTCCAAAGTACCGTAAATATATATATATATATATAGATATATAGATATCTTCCACAGAAACCGAGATATATAGATTCAAAGTTGTCTGTTCTGCTGGCCTTCTAATAGTGTTTACGGTATTTTTTAATGTGTACTTTTTTTTTCAAATTACAAACTCCAAAACTCACCTAAATACCAAAATGACCATTTTCTAGGTAACCCGATCAAGTTTTCAGTAAAAATGATATAAGCACCATTATAAAAATGTAGTTTCGGTTGAATTGTAAGGT</canonical>
            <polymorphic>CGGAAAAATCAAAACACATCCAGCTGGGAAAAAAAGAAGAAATAACGGAAATACTGTTTGAGCAACTAAAGATTTGAATAGTTGATGTTGCATTTCTAAAGTTCGTCTGGAAACTTGGGTCCGAAAATTGAAAGTGATCTCTGTAAAAATTTTCCGAAGCCGGTACCAACAAAATGTGATAATTGAAAAACCAGAAATCTGAAAAGTTGAGATTTAGAAAGATCATACATTTAAGAGATGGTCTCACAATTATAAAATCAATATTCAGGACGAATAAAAAATCAGAAATACTCGGATATTCCAAACTGGTCAATGGATTTATCCGCTGAAAATTAACATTTGTTGGAAGAACTGAAAATAAAATGTACATAGAAAAGTGAAGCTGCGTATGTATACTCCTGGGGATTCAAATTGAAGTTTAGCAGCATAGTATCTCTGAAAAATTAGTCATATCTGAATTTCCGAGAACTCATCACTTCTTTCAAAAACGTACCTGATAWACTCACTGACTTCCAAATCCTCTCCAGCAAACCAAATTGCCATAAACCACCAATTTAGTGCAATTAACAAAAATAGGCCAATGAGCGAAAAATAATTAGGATACGAGAATAAAAGCAGTTTATGCGGCTTACAAACAGCAAGATATCTGTATAGAAAATGAAAAGACAATAGATATAAAGTCATCCCATAGGCAGAACAGTGTAGGGCTGAAATTCTGAAACTTGCTCAGACTCCAAAGTACCGTAAATATATATATATATATATAGATATATAGATATCTTCCACAGAAACCGAGATATATAGATTCAAAGTTGTCTGTTCTGCTGGCCTTCTAATAGTGTTTACGGTATTTTTTAATGTGTACTTTTTTTTTCAAATTACAAACTCCAAAACTCACCTAAATACCAAAATGACCATTTTCTAGGTAACCCGATCAAGTTTTCAGTAAAAATGATATAAGCACCATTATAAAAATGTAGTTTCGGTTGAATTGTAAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTAACATTTGTTGGAAGA</pcr_primer_p1>
		<pcr_primer_p2>GCCTATTTTTGTTAATTGCACTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTAACATTTGTTGGAAGAACTGAAAATAAAATGTACATAGAAAAGTGAAGCTGCGTATGTATACTCCTGGGGATTCAAATTGAAGTTTAGCAGCATAGTATCTCTGAAAAATTAGTCATATCTGAATTTCCGAGAACTCATCACTTCTTTCAAAAACGTACCTGATAAACTCACTGACTTCCAAATCCTCTCCAGCAAACCAAATTGCCATAAACCACCAATTTAGTGCAATTAACAAAAATAGGC</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTAACATTTGTTGGAAGAACTGAAAATAAAATGTACATAGAAAAGTGAAGCTGCGTATGTATACTCCTGGGGATTCAAATTGAAGTTTAGCAGCATAGTATCTCTGAAAAATTAGTCATATCTGAATTTCCGAGAACTCATCACTTCTTTCAAAAACGTACCTGATAWACTCACTGACTTCCAAATCCTCTCCAGCAAACCAAATTGCCATAAACCACCAATTTAGTGCAATTAACAAAAATAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11324</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>82553</contig_pos>
        <strand>+</strand>
        <context>TTGTTTAGCA[A/G]TGAATGGAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTGTCATTTACATGATGTGCAATTGAATACAACAATCGATTGTTTAGCA</left_flank>
        <right_flank>TGAATGGAGCAAAGTGAGCTTCAAACCTTTTTTTATTTGAAAAACGAAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTTGCATCCTAATGATATTTTCATACATTCTTCATCTGAAAAACTATCTGAAATTTACAAAATTTTTCAGACTATATAACAAAAATGCCTGATACCCATCCACCGAGTTCTCCACCACCACGGAGCAATTCCATGTCAGCCACTTTCAACTATCTTCATCTTGACGCTGACAAAGTTCTATCAGCTTTTGGTAAATATGGGCGGTATCAGGTAATTCAAGGTTTTTACAGTATCTCAGAATCCCAAAAGAATTTCCCAGATGCTCGCATATGTTATCACTACATCCGTCCACATGCTGTTCGCTTTGAATATGATGATCATGCCATTCATTACAAAGACCACTTCGTTTTTATGTGATGTGCCTGATAGTCCGGTATGAGATACAAGTTTCGAGATTTCTCAAAACAGAGAAAAATTACAGAACTTCTCACCCTTGGTGGGAGATAGCTGTCATTTACATGATGTGCAATTGAATACAACAATCGATTGTTTAGCAGTGAATGGAGCAAAGTGAGCTTCAAACCTTTTTTTATTTGAAAAACGAAAGTGTCTTTTTTTAAACCTTCTTCAAAAATTCATCTTCGAAGTATTTCAGATACGCATACGAAGAAGACAAAAAATCCACCATCACTAGTGACTTCGACTTGGTATGCGAGTATCAAGGAATGGCGGAGCACGCCACATCAATTTTCCTAGTGGGTGGAATGATTGTATCACCATTTGTCAGTCAATTATCTGATATTCTTGGTCGCCGTCCATTGTTTTTGATTCCACTCTACGTTAGTGTGGTTGCCAATTTGATTTGTGCCGCGGCACCGAACTATTTGATATTTCTGCTGTCTAGGTTTATTTCCGGAGTTGCTACTACGGTGAGTTTTTTTTTATACATTTTAATTAAATCAAAATGTAGCAAAATCTTGACGTTACCATCTAAATTTTCAGAGCTTCAGTATGACTGGCTTCGTTCTGTGCATGGAATCCGTCTCCCTTGAGTTCC</canonical>
            <polymorphic>GATTTTGCATCCTAATGATATTTTCATACATTCTTCATCTGAAAAACTATCTGAAATTTACAAAATTTTTCAGACTATATAACAAAAATGCCTGATACCCATCCACCGAGTTCTCCACCACCACGGAGCAATTCCATGTCAGCCACTTTCAACTATCTTCATCTTGACGCTGACAAAGTTCTATCAGCTTTTGGTAAATATGGGCGGTATCAGGTAATTCAAGGTTTTTACAGTATCTCAGAATCCCAAAAGAATTTCCCAGATGCTCGCATATGTTATCACTACATCCGTCCACATGCTGTTCGCTTTGAATATGATGATCATGCCATTCATTACAAAGACCACTTCGTTTTTATGTGATGTGCCTGATAGTCCGGTATGAGATACAAGTTTCGAGATTTCTCAAAACAGAGAAAAATTACAGAACTTCTCACCCTTGGTGGGAGATAGCTGTCATTTACATGATGTGCAATTGAATACAACAATCGATTGTTTAGCARTGAATGGAGCAAAGTGAGCTTCAAACCTTTTTTTATTTGAAAAACGAAAGTGTCTTTTTTTAAACCTTCTTCAAAAATTCATCTTCGAAGTATTTCAGATACGCATACGAAGAAGACAAAAAATCCACCATCACTAGTGACTTCGACTTGGTATGCGAGTATCAAGGAATGGCGGAGCACGCCACATCAATTTTCCTAGTGGGTGGAATGATTGTATCACCATTTGTCAGTCAATTATCTGATATTCTTGGTCGCCGTCCATTGTTTTTGATTCCACTCTACGTTAGTGTGGTTGCCAATTTGATTTGTGCCGCGGCACCGAACTATTTGATATTTCTGCTGTCTAGGTTTATTTCCGGAGTTGCTACTACGGTGAGTTTTTTTTTATACATTTTAATTAAATCAAAATGTAGCAAAATCTTGACGTTACCATCTAAATTTTCAGAGCTTCAGTATGACTGGCTTCGTTCTGTGCATGGAATCCGTCTCCCTTGAGTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>136 105 99 75 69 57 57 50 40 36 33 27 26 22 19 17 15 14 14 13 13 12 9 8 6 6 5 5 4 3 3 2</canonical_bands>
                <polymorphic_bands>136 105 99 75 69 57 57 50 47 40 36 27 26 22 19 17 15 14 13 13 12 9 8 6 6 5 5 4 3 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTATGTGATGTGCCTGATAG</pcr_primer_p1>
		<pcr_primer_p2>ATCTGAAATACTTCGAAGATGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTATGTGATGTGCCTGATAGTCCGGTATGAGATACAAGTTTCGAGATTTCTCAAAACAGAGAAAAATTACAGAACTTCTCACCCTTGGTGGGAGATAGCTGTCATTTACATGATGTGCAATTGAATACAACAATCGATTGTTTAGCAGTGAATGGAGCAAAGTGAGCTTCAAACCTTTTTTTATTTGAAAAACGAAAGTGTCTTTTTTTAAACCTTCTTCAAAAATTCATCTTCGAAGTATTTCAGAT</canonical_amplicon>
		<polymorphic_amplicon>TTTTATGTGATGTGCCTGATAGTCCGGTATGAGATACAAGTTTCGAGATTTCTCAAAACAGAGAAAAATTACAGAACTTCTCACCCTTGGTGGGAGATAGCTGTCATTTACATGATGTGCAATTGAATACAACAATCGATTGTTTAGCARTGAATGGAGCAAAGTGAGCTTCAAACCTTTTTTTATTTGAAAAACGAAAGTGTCTTTTTTTAAACCTTCTTCAAAAATTCATCTTCGAAGTATTTCAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11325</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>82082</contig_pos>
        <strand>+</strand>
        <context>TATTTTCATA[A/C]ATTCTTCATC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGGTTTTAGTTTTCGGTTTCTTGATTTTGCATCCTAATGATATTTTCATA</left_flank>
        <right_flank>ATTCTTCATCTGAAAAACTATCTGAAATTTACAAAATTTTTCAGACTATA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAATTGGCTCAAAGTTAAACGCCAGTTCCCTTCTATTACAAGTTTTACGGTACAACAAACAAACTTTAAATCTCAGAATTTTCACATTTAAGTTACTTTCGAATATAAGGTAGATTGTTTTCTTTCTTGTCAGTTTTTTTCGAACACCTCTCTCGCACCTGGCACCAACTGCCCCTCATCAACCACACCACATTTTCCCTCTCGTTTCTGACCGAAAATTCGTCGCATTATCACTTTAACATTTCTTATCGGCTCACGATACTGACAGACGGCCATTTTTAGGGGTATAGAGTGCATACACCTCAAAACTTCTTCTTATCAAAATAGCTATCATTGTGTCTCTGTGTCTCGTCTGACTCTCACTCTCTTTCAATATCAAGGTATCTGTATCGACTTAAAGAAATGTGCATTGGAAGTATAGAAGTGCTGTCATTTAGCACTTTTTGACGGTTTTAGTTTTCGGTTTCTTGATTTTGCATCCTAATGATATTTTCATACATTCTTCATCTGAAAAACTATCTGAAATTTACAAAATTTTTCAGACTATATAACAAAAATGCCTGATACCCATCCACCGAGTTCTCCACCACCACGGAGCAATTCCATGTCAGCCACTTTCAACTATCTTCATCTTGACGCTGACAAAGTTCTATCAGCTTTTGGTAAATATGGGCGGTATCAGGTAATTCAAGGTTTTTACAGTATCTCAGAATCCCAAAAGAATTTCCCAGATGCTCGCATATGTTATCACTACATCCGTCCACATGCTGTTCGCTTTGAATATGATGATCATGCCATTCATTACAAAGACCACTTCGTTTTTATGTGATGTGCCTGATAGTCCGGTATGAGATACAAGTTTCGAGATTTCTCAAAACAGAGAAAAATTACAGAACTTCTCACCCTTGGTGGGAGATAGCTGTCATTTACATGATGTGCAATTGAATACAACAATCGATTGTTTAGCAGTGAATGGAGCAAAGTGAGCTTCAAACCTT</canonical>
            <polymorphic>ATGAATTGGCTCAAAGTTAAACGCCAGTTCCCTTCTATTACAAGTTTTACGGTACAACAAACAAACTTTAAATCTCAGAATTTTCACATTTAAGTTACTTTCGAATATAAGGTAGATTGTTTTCTTTCTTGTCAGTTTTTTTCGAACACCTCTCTCGCACCTGGCACCAACTGCCCCTCATCAACCACACCACATTTTCCCTCTCGTTTCTGACCGAAAATTCGTCGCATTATCACTTTAACATTTCTTATCGGCTCACGATACTGACAGACGGCCATTTTTAGGGGTATAGAGTGCATACACCTCAAAACTTCTTCTTATCAAAATAGCTATCATTGTGTCTCTGTGTCTCGTCTGACTCTCACTCTCTTTCAATATCAAGGTATCTGTATCGACTTAAAGAAATGTGCATTGGAAGTATAGAAGTGCTGTCATTTAGCACTTTTTGACGGTTTTAGTTTTCGGTTTCTTGATTTTGCATCCTAATGATATTTTCATAMATTCTTCATCTGAAAAACTATCTGAAATTTACAAAATTTTTCAGACTATATAACAAAAATGCCTGATACCCATCCACCGAGTTCTCCACCACCACGGAGCAATTCCATGTCAGCCACTTTCAACTATCTTCATCTTGACGCTGACAAAGTTCTATCAGCTTTTGGTAAATATGGGCGGTATCAGGTAATTCAAGGTTTTTACAGTATCTCAGAATCCCAAAAGAATTTCCCAGATGCTCGCATATGTTATCACTACATCCGTCCACATGCTGTTCGCTTTGAATATGATGATCATGCCATTCATTACAAAGACCACTTCGTTTTTATGTGATGTGCCTGATAGTCCGGTATGAGATACAAGTTTCGAGATTTCTCAAAACAGAGAAAAATTACAGAACTTCTCACCCTTGGTGGGAGATAGCTGTCATTTACATGATGTGCAATTGAATACAACAATCGATTGTTTAGCAGTGAATGGAGCAAAGTGAGCTTCAAACCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATAGAAGTGCTGTCATTTAGCA</pcr_primer_p1>
		<pcr_primer_p2>TACCAAAAGCTGATAGAACTTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATAGAAGTGCTGTCATTTAGCACTTTTTGACGGTTTTAGTTTTCGGTTTCTTGATTTTGCATCCTAATGATATTTTCATACATTCTTCATCTGAAAAACTATCTGAAATTTACAAAATTTTTCAGACTATATAACAAAAATGCCTGATACCCATCCACCGAGTTCTCCACCACCACGGAGCAATTCCATGTCAGCCACTTTCAACTATCTTCATCTTGACGCTGACAAAGTTCTATCAGCTTTTGGTA</canonical_amplicon>
		<polymorphic_amplicon>TATAGAAGTGCTGTCATTTAGCACTTTTTGACGGTTTTAGTTTTCGGTTTCTTGATTTTGCATCCTAATGATATTTTCATAMATTCTTCATCTGAAAAACTATCTGAAATTTACAAAATTTTTCAGACTATATAACAAAAATGCCTGATACCCATCCACCGAGTTCTCCACCACCACGGAGCAATTCCATGTCAGCCACTTTCAACTATCTTCATCTTGACGCTGACAAAGTTCTATCAGCTTTTGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11326</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>82061</contig_pos>
        <strand>+</strand>
        <context>CTTGATTTTG[C/T]ATCCTAATGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGTCATTTAGCACTTTTTGACGGTTTTAGTTTTCGGTTTCTTGATTTTG</left_flank>
        <right_flank>ATCCTAATGATATTTTCATACATTCTTCATCTGAAAAACTATCTGAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATCATTGGCAAGAACCGAGATGAATTGGCTCAAAGTTAAACGCCAGTTCCCTTCTATTACAAGTTTTACGGTACAACAAACAAACTTTAAATCTCAGAATTTTCACATTTAAGTTACTTTCGAATATAAGGTAGATTGTTTTCTTTCTTGTCAGTTTTTTTCGAACACCTCTCTCGCACCTGGCACCAACTGCCCCTCATCAACCACACCACATTTTCCCTCTCGTTTCTGACCGAAAATTCGTCGCATTATCACTTTAACATTTCTTATCGGCTCACGATACTGACAGACGGCCATTTTTAGGGGTATAGAGTGCATACACCTCAAAACTTCTTCTTATCAAAATAGCTATCATTGTGTCTCTGTGTCTCGTCTGACTCTCACTCTCTTTCAATATCAAGGTATCTGTATCGACTTAAAGAAATGTGCATTGGAAGTATAGAAGTGCTGTCATTTAGCACTTTTTGACGGTTTTAGTTTTCGGTTTCTTGATTTTGCATCCTAATGATATTTTCATACATTCTTCATCTGAAAAACTATCTGAAATTTACAAAATTTTTCAGACTATATAACAAAAATGCCTGATACCCATCCACCGAGTTCTCCACCACCACGGAGCAATTCCATGTCAGCCACTTTCAACTATCTTCATCTTGACGCTGACAAAGTTCTATCAGCTTTTGGTAAATATGGGCGGTATCAGGTAATTCAAGGTTTTTACAGTATCTCAGAATCCCAAAAGAATTTCCCAGATGCTCGCATATGTTATCACTACATCCGTCCACATGCTGTTCGCTTTGAATATGATGATCATGCCATTCATTACAAAGACCACTTCGTTTTTATGTGATGTGCCTGATAGTCCGGTATGAGATACAAGTTTCGAGATTTCTCAAAACAGAGAAAAATTACAGAACTTCTCACCCTTGGTGGGAGATAGCTGTCATTTACATGATGTGCAATTGAATACAACAATCGATTGTTTAGCAGTGAATGGA</canonical>
            <polymorphic>ATATCATTGGCAAGAACCGAGATGAATTGGCTCAAAGTTAAACGCCAGTTCCCTTCTATTACAAGTTTTACGGTACAACAAACAAACTTTAAATCTCAGAATTTTCACATTTAAGTTACTTTCGAATATAAGGTAGATTGTTTTCTTTCTTGTCAGTTTTTTTCGAACACCTCTCTCGCACCTGGCACCAACTGCCCCTCATCAACCACACCACATTTTCCCTCTCGTTTCTGACCGAAAATTCGTCGCATTATCACTTTAACATTTCTTATCGGCTCACGATACTGACAGACGGCCATTTTTAGGGGTATAGAGTGCATACACCTCAAAACTTCTTCTTATCAAAATAGCTATCATTGTGTCTCTGTGTCTCGTCTGACTCTCACTCTCTTTCAATATCAAGGTATCTGTATCGACTTAAAGAAATGTGCATTGGAAGTATAGAAGTGCTGTCATTTAGCACTTTTTGACGGTTTTAGTTTTCGGTTTCTTGATTTTGYATCCTAATGATATTTTCATACATTCTTCATCTGAAAAACTATCTGAAATTTACAAAATTTTTCAGACTATATAACAAAAATGCCTGATACCCATCCACCGAGTTCTCCACCACCACGGAGCAATTCCATGTCAGCCACTTTCAACTATCTTCATCTTGACGCTGACAAAGTTCTATCAGCTTTTGGTAAATATGGGCGGTATCAGGTAATTCAAGGTTTTTACAGTATCTCAGAATCCCAAAAGAATTTCCCAGATGCTCGCATATGTTATCACTACATCCGTCCACATGCTGTTCGCTTTGAATATGATGATCATGCCATTCATTACAAAGACCACTTCGTTTTTATGTGATGTGCCTGATAGTCCGGTATGAGATACAAGTTTCGAGATTTCTCAAAACAGAGAAAAATTACAGAACTTCTCACCCTTGGTGGGAGATAGCTGTCATTTACATGATGTGCAATTGAATACAACAATCGATTGTTTAGCAGTGAATGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>462 317 113 69 39</canonical_bands>
                <polymorphic_bands>531 317 113 39</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>504 447 49</canonical_bands>
                <polymorphic_bands>951 49</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATAGAAGTGCTGTCATTTAGCA</pcr_primer_p1>
		<pcr_primer_p2>TACCAAAAGCTGATAGAACTTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATAGAAGTGCTGTCATTTAGCACTTTTTGACGGTTTTAGTTTTCGGTTTCTTGATTTTGCATCCTAATGATATTTTCATACATTCTTCATCTGAAAAACTATCTGAAATTTACAAAATTTTTCAGACTATATAACAAAAATGCCTGATACCCATCCACCGAGTTCTCCACCACCACGGAGCAATTCCATGTCAGCCACTTTCAACTATCTTCATCTTGACGCTGACAAAGTTCTATCAGCTTTTGGTA</canonical_amplicon>
		<polymorphic_amplicon>TATAGAAGTGCTGTCATTTAGCACTTTTTGACGGTTTTAGTTTTCGGTTTCTTGATTTTGYATCCTAATGATATTTTCATACATTCTTCATCTGAAAAACTATCTGAAATTTACAAAATTTTTCAGACTATATAACAAAAATGCCTGATACCCATCCACCGAGTTCTCCACCACCACGGAGCAATTCCATGTCAGCCACTTTCAACTATCTTCATCTTGACGCTGACAAAGTTCTATCAGCTTTTGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11327</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>145607</contig_pos>
        <strand>+</strand>
        <context>AAATGGAAAA[A/G]CACGCCTTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCGAAGAGAGCGGTGGCTACTTCCCTGATCTAATCTATGAAATGGAAAA</left_flank>
        <right_flank>CACGCCTTCCTCAATTCAATCCTTCCATGGGGAAACTTCACCACTCGAGC</right_flank>
        <qual_score>146</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCTTTGCCGACTATCACCTTTTCAAGAAAGACTTCCCCGATTATGATGATCGGTAAGCTACACACCATCTAAGTCGAAATTTGAACACCCGTCAATTTCTTTCAGCGTCGCATTCTGTCGTCAATTCCAGCGACTCTCGATGGTCGAGAGCGAACAGGGAACAGCGCAATTTTGTATTGCCAACATGGAAAACGGTGCTGAGGATTTGAGAAATATGATGGAGTTTCTGTATGAAGTGGCACCGGAGCTTAATATCAAATGTGGAAACTTCAATGCAGGAATTCTTAACACACAGACGAAGAAATTTTCAGAGTATTATGAGAAAGTTTTGGAGAATTATGACTCTGGAACGTTCAAGTAAGAATAATAAACTTTAGAAATTCGTAGAAAAATATTGATTTTTTCAGATGGAGTCCATTGGAAGCCGTTCAACTGGTTGGAAAGAAGGCCGAAGAGAGCGGTGGCTACTTCCCTGATCTAATCTATGAAATGGAAAAACACGCCTTCCTCAATTCAATCCTTCCATGGGGAAACTTCACCACTCGAGCCAACACAGCCCATCGCGACTCAAACGATGGTCCGATCCTTTGGGTTCGTCCTGGCGAGCAGACGGTGCCAACCAGCAACTCCGGAACCACTTCATTGCGAGCTGCCGGTAATCGTGAAATTGAATTCCTGGATCGTACACCAGCACATGCCGATCAGGCTGACGATCCGGAGGCTACTCGGATAACGACAGGTGCCATTGGAATTCTTCAAGGAATACCGGGAAAACAAGCCGACTATCCAGAAGAGCGACGTGTGATGAAAGAAGTCGTGTCGTTCTTCGCTGGGGACATTGAAGAGGTTGTCAAAACTCTCAAGATAGATCTGTTCGAGCCTCCAGCTACTCAGGTAAGGAAACTATTTTAGATAAATTCCATTAGCTTCAGTTCTATGAATTTTGGAACCAAAATCAAAAAGATCTCATAAAAAATTGTATACCATAATTGAAAAGG</canonical>
            <polymorphic>GCTCTTTGCCGACTATCACCTTTTCAAGAAAGACTTCCCCGATTATGATGATCGGTAAGCTACACACCATCTAAGTCGAAATTTGAACACCCGTCAATTTCTTTCAGCGTCGCATTCTGTCGTCAATTCCAGCGACTCTCGATGGTCGAGAGCGAACAGGGAACAGCGCAATTTTGTATTGCCAACATGGAAAACGGTGCTGAGGATTTGAGAAATATGATGGAGTTTCTGTATGAAGTGGCACCGGAGCTTAATATCAAATGTGGAAACTTCAATGCAGGAATTCTTAACACACAGACGAAGAAATTTTCAGAGTATTATGAGAAAGTTTTGGAGAATTATGACTCTGGAACGTTCAAGTAAGAATAATAAACTTTAGAAATTCGTAGAAAAATATTGATTTTTTCAGATGGAGTCCATTGGAAGCCGTTCAACTGGTTGGAAAGAAGGCCGAAGAGAGCGGTGGCTACTTCCCTGATCTAATCTATGAAATGGAAAARCACGCCTTCCTCAATTCAATCCTTCCATGGGGAAACTTCACCACTCGAGCCAACACAGCCCATCGCGACTCAAACGATGGTCCGATCCTTTGGGTTCGTCCTGGCGAGCAGACGGTGCCAACCAGCAACTCCGGAACCACTTCATTGCGAGCTGCCGGTAATCGTGAAATTGAATTCCTGGATCGTACACCAGCACATGCCGATCAGGCTGACGATCCGGAGGCTACTCGGATAACGACAGGTGCCATTGGAATTCTTCAAGGAATACCGGGAAAACAAGCCGACTATCCAGAAGAGCGACGTGTGATGAAAGAAGTCGTGTCGTTCTTCGCTGGGGACATTGAAGAGGTTGTCAAAACTCTCAAGATAGATCTGTTCGAGCCTCCAGCTACTCAGGTAAGGAAACTATTTTAGATAAATTCCATTAGCTTCAGTTCTATGAATTTTGGAACCAAAATCAAAAAGATCTCATAAAAAATTGTATACCATAATTGAAAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAACTGGTTGGAAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>AGGAATTCAATTTCACGATTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCAACTGGTTGGAAAGAAGGCCGAAGAGAGCGGTGGCTACTTCCCTGATCTAATCTATGAAATGGAAAAACACGCCTTCCTCAATTCAATCCTTCCATGGGGAAACTTCACCACTCGAGCCAACACAGCCCATCGCGACTCAAACGATGGTCCGATCCTTTGGGTTCGTCCTGGCGAGCAGACGGTGCCAACCAGCAACTCCGGAACCACTTCATTGCGAGCTGCCGGTAATCGTGAAATTGAATTCCT</canonical_amplicon>
		<polymorphic_amplicon>TTCAACTGGTTGGAAAGAAGGCCGAAGAGAGCGGTGGCTACTTCCCTGATCTAATCTATGAAATGGAAAARCACGCCTTCCTCAATTCAATCCTTCCATGGGGAAACTTCACCACTCGAGCCAACACAGCCCATCGCGACTCAAACGATGGTCCGATCCTTTGGGTTCGTCCTGGCGAGCAGACGGTGCCAACCAGCAACTCCGGAACCACTTCATTGCGAGCTGCCGGTAATCGTGAAATTGAATTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11329</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>146015</contig_pos>
        <strand>+</strand>
        <context>TAAGGAAACT[A/G]TTTTAGATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTCTCAAGATAGATCTGTTCGAGCCTCCAGCTACTCAGGTAAGGAAACT</left_flank>
        <right_flank>TTTTAGATAAATTCCATTAGCTTCAGTTCTATGAATTTTGGAACCAAAAT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGGAGTCCATTGGAAGCCGTTCAACTGGTTGGAAAGAAGGCCGAAGAGAGCGGTGGCTACTTCCCTGATCTAATCTATGAAATGGAAAAACACGCCTTCCTCAATTCAATCCTTCCATGGGGAAACTTCACCACTCGAGCCAACACAGCCCATCGCGACTCAAACGATGGTCCGATCCTTTGGGTTCGTCCTGGCGAGCAGACGGTGCCAACCAGCAACTCCGGAACCACTTCATTGCGAGCTGCCGGTAATCGTGAAATTGAATTCCTGGATCGTACACCAGCACATGCCGATCAGGCTGACGATCCGGAGGCTACTCGGATAACGACAGGTGCCATTGGAATTCTTCAAGGAATACCGGGAAAACAAGCCGACTATCCAGAAGAGCGACGTGTGATGAAAGAAGTCGTGTCGTTCTTCGCTGGGGACATTGAAGAGGTTGTCAAAACTCTCAAGATAGATCTGTTCGAGCCTCCAGCTACTCAGGTAAGGAAACTATTTTAGATAAATTCCATTAGCTTCAGTTCTATGAATTTTGGAACCAAAATCAAAAAGATCTCATAAAAAATTGTATACCATAATTGAAAAGGTACCATGAAACATTTGGTACCATAATGAAAAATATGCCATCGAAAGCATTTGTACCATAATAAAAAATATACCATAATTAAATAATTTTTTTCCAGACCACGATGTGGGTAGACGACGCAAAACTGAACACAATGCGCCGCTCTGGCATCAGATATGCGAAATTCGAGCTTCGCGAAAACGATCTCTACTTCATTCCTCGAAAAGTTGTCCATCAATTCCGTACGGTATCCGCATGCGTCTCGCTTGCATGGCATGTACGTCTTCAACACTACTATAACAATGATCAAAACTATGAAGCGACAGTCCATGAGACAATCAAACGATACGATGCTGAGTTCGATTCAGAAGGACCCTCCCCGGTGAGAGAGCCACGGGTCAGAAGATAATTGGATAAATAATTCATATAT</canonical>
            <polymorphic>GATGGAGTCCATTGGAAGCCGTTCAACTGGTTGGAAAGAAGGCCGAAGAGAGCGGTGGCTACTTCCCTGATCTAATCTATGAAATGGAAAAACACGCCTTCCTCAATTCAATCCTTCCATGGGGAAACTTCACCACTCGAGCCAACACAGCCCATCGCGACTCAAACGATGGTCCGATCCTTTGGGTTCGTCCTGGCGAGCAGACGGTGCCAACCAGCAACTCCGGAACCACTTCATTGCGAGCTGCCGGTAATCGTGAAATTGAATTCCTGGATCGTACACCAGCACATGCCGATCAGGCTGACGATCCGGAGGCTACTCGGATAACGACAGGTGCCATTGGAATTCTTCAAGGAATACCGGGAAAACAAGCCGACTATCCAGAAGAGCGACGTGTGATGAAAGAAGTCGTGTCGTTCTTCGCTGGGGACATTGAAGAGGTTGTCAAAACTCTCAAGATAGATCTGTTCGAGCCTCCAGCTACTCAGGTAAGGAAACTRTTTTAGATAAATTCCATTAGCTTCAGTTCTATGAATTTTGGAACCAAAATCAAAAAGATCTCATAAAAAATTGTATACCATAATTGAAAAGGTACCATGAAACATTTGGTACCATAATGAAAAATATGCCATCGAAAGCATTTGTACCATAATAAAAAATATACCATAATTAAATAATTTTTTTCCAGACCACGATGTGGGTAGACGACGCAAAACTGAACACAATGCGCCGCTCTGGCATCAGATATGCGAAATTCGAGCTTCGCGAAAACGATCTCTACTTCATTCCTCGAAAAGTTGTCCATCAATTCCGTACGGTATCCGCATGCGTCTCGCTTGCATGGCATGTACGTCTTCAACACTACTATAACAATGATCAAAACTATGAAGCGACAGTCCATGAGACAATCAAACGATACGATGCTGAGTTCGATTCAGAAGGACCCTCCCCGGTGAGAGAGCCACGGGTCAGAAGATAATTGGATAAATAATTCATATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGATGAAAGAAGTCGTGTC</pcr_primer_p1>
		<pcr_primer_p2>ATGGCATATTTTTCATTATGGTA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TGTGATGAAAGAAGTCGTGTCGTTCTTCGCTGGGGACATTGAAGAGGTTGTCAAAACTCTCAAGATAGATCTGTTCGAGCCTCCAGCTACTCAGGTAAGGAAACTATTTTAGATAAATTCCATTAGCTTCAGTTCTATGAATTTTGGAACCAAAATCAAAAAGATCTCATAAAAAATTGTATACCATAATTGAAAAGGTACCATGAAACATTTGGTACCATAATGAAAAATATGCCAT</canonical_amplicon>
		<polymorphic_amplicon>TGTGATGAAAGAAGTCGTGTCGTTCTTCGCTGGGGACATTGAAGAGGTTGTCAAAACTCTCAAGATAGATCTGTTCGAGCCTCCAGCTACTCAGGTAAGGAAACTRTTTTAGATAAATTCCATTAGCTTCAGTTCTATGAATTTTGGAACCAAAATCAAAAAGATCTCATAAAAAATTGTATACCATAATTGAAAAGGTACCATGAAACATTTGGTACCATAATGAAAAATATGCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11335</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>148346</contig_pos>
        <strand>+</strand>
        <context>TGCTGATGGG[C/T]GTGAGCTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGG</left_flank>
        <right_flank>GTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTATTGATTTGGTTTATCAAAAAATTTGAATAAGATTTAAAAAATTTGATTAAAATGCAAAAAATTTGACTAACATTCAGAAAATTTGACTGAAAATTGACTAAAATTCTACGAAAAAGTAAGAAAATTGACAGAAAAATAGCAAAGAAATATATTGAACATTTTCTAAAAGCAGAAAAAAGATCTAAGCATTTTCGAATCGTACCGGAAATTTTCAGAAGATGTTACCGTATTTCCTCTGATAGAACCCCACCCAACTTTGAGCACATCTATCTCAATTACTGTCAAAGATATCAAAAAGTCGTCCACTAATAAAATATTGGTGATATTGTGATAAATAGTTTATTAGTTTACAGCTTTCTGGTATCTTCTACAAGAATTGAGATTATGTGGCGCCAAAATCCGGGTGTTCTTTTTTCCTCGGTGCTGCAGAACCCTAACCTACCTCTTG</canonical>
            <polymorphic>CAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGYGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTATTGATTTGGTTTATCAAAAAATTTGAATAAGATTTAAAAAATTTGATTAAAATGCAAAAAATTTGACTAACATTCAGAAAATTTGACTGAAAATTGACTAAAATTCTACGAAAAAGTAAGAAAATTGACAGAAAAATAGCAAAGAAATATATTGAACATTTTCTAAAAGCAGAAAAAAGATCTAAGCATTTTCGAATCGTACCGGAAATTTTCAGAAGATGTTACCGTATTTCCTCTGATAGAACCCCACCCAACTTTGAGCACATCTATCTCAATTACTGTCAAAGATATCAAAAAGTCGTCCACTAATAAAATATTGGTGATATTGTGATAAATAGTTTATTAGTTTACAGCTTTCTGGTATCTTCTACAAGAATTGAGATTATGTGGCGCCAAAATCCGGGTGTTCTTTTTTCCTCGGTGCTGCAGAACCCTAACCTACCTCTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>298 144 116 94 59 53 42 34 25 24 21 17 17 17 14 13 8 2 2</canonical_bands>
                <polymorphic_bands>298 146 116 94 59 53 42 34 25 24 21 17 17 17 14 13 8 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTATCATCTTCAGCTGTTCTC</pcr_primer_p1>
		<pcr_primer_p2>ACCAAATCAATACATTTTCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTATTGATTTGGT</canonical_amplicon>
		<polymorphic_amplicon>AATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGYGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTATTGATTTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11336</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>148297</contig_pos>
        <strand>+</strand>
        <context>TTCATATTAA[A/C]TTACCGGCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAA</left_flank>
        <right_flank>TTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTATTGATTTGGTTTATCAAAAAATTTGAATAAGATTTAAAAAATTTGATTAAAATGCAAAAAATTTGACTAACATTCAGAAAATTTGACTGAAAATTGACTAAAATTCTACGAAAAAGTAAGAAAATTGACAGAAAAATAGCAAAGAAATATATTGAACATTTTCTAAAAGCAGAAAAAAGATCTAAGCATTTTCGAATCGTACCGGAAATTTTCAGAAGATGTTACCGTATTTCCTCTGATAGAACCCCACCCAACTTTGAGCACATCTATCTCAATTACTGTCAAAGATATCAAAAAGTCGTCCACTAATAAAATATTGGTGATATTGTGATAAATAGTTTATTAGTTTACAGCTTTCTGGTATCTTCTACAAGAATTGAGATTATGTGGCGCCAAAAT</canonical>
            <polymorphic>AGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAMTTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTATTGATTTGGTTTATCAAAAAATTTGAATAAGATTTAAAAAATTTGATTAAAATGCAAAAAATTTGACTAACATTCAGAAAATTTGACTGAAAATTGACTAAAATTCTACGAAAAAGTAAGAAAATTGACAGAAAAATAGCAAAGAAATATATTGAACATTTTCTAAAAGCAGAAAAAAGATCTAAGCATTTTCGAATCGTACCGGAAATTTTCAGAAGATGTTACCGTATTTCCTCTGATAGAACCCCACCCAACTTTGAGCACATCTATCTCAATTACTGTCAAAGATATCAAAAAGTCGTCCACTAATAAAATATTGGTGATATTGTGATAAATAGTTTATTAGTTTACAGCTTTCTGGTATCTTCTACAAGAATTGAGATTATGTGGCGCCAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>358 122 101 89 84 67 33 25 21 20 20 20 18 12 10</canonical_bands>
                <polymorphic_bands>358 155 101 89 84 67 25 21 20 20 20 18 12 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTATCATCTTCAGCTGTTCTC</pcr_primer_p1>
		<pcr_primer_p2>ACCAAATCAATACATTTTCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTATTGATTTGGT</canonical_amplicon>
		<polymorphic_amplicon>AATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAMTTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTATTGATTTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11337</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>148250</contig_pos>
        <strand>+</strand>
        <context>ACTTAAATTG[A/G]CATGCCTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTG</left_flank>
        <right_flank>CATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTATTGATTTGGTTTATCAAAAAATTTGAATAAGATTTAAAAAATTTGATTAAAATGCAAAAAATTTGACTAACATTCAGAAAATTTGACTGAAAATTGACTAAAATTCTACGAAAAAGTAAGAAAATTGACAGAAAAATAGCAAAGAAATATATTGAACATTTTCTAAAAGCAGAAAAAAGATCTAAGCATTTTCGAATCGTACCGGAAATTTTCAGAAGATGTTACCGTATTTCCTCTGATAGAACCCCACCCAACTTTGAGCACATCTATCTCAATTACTGTCAAAGATATCAAAAAGTCGTCCACTAATAAAATATTGGTGATATTGTGATAAATAGTTTATTAGTTTACA</canonical>
            <polymorphic>GATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGRCATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTATTGATTTGGTTTATCAAAAAATTTGAATAAGATTTAAAAAATTTGATTAAAATGCAAAAAATTTGACTAACATTCAGAAAATTTGACTGAAAATTGACTAAAATTCTACGAAAAAGTAAGAAAATTGACAGAAAAATAGCAAAGAAATATATTGAACATTTTCTAAAAGCAGAAAAAAGATCTAAGCATTTTCGAATCGTACCGGAAATTTTCAGAAGATGTTACCGTATTTCCTCTGATAGAACCCCACCCAACTTTGAGCACATCTATCTCAATTACTGTCAAAGATATCAAAAAGTCGTCCACTAATAAAATATTGGTGATATTGTGATAAATAGTTTATTAGTTTACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATGGTACTTAGGAACTCAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTGAAAAATGTTGAGGTCATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAG</canonical_amplicon>
		<polymorphic_amplicon>TGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGRCATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11338</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>148201</contig_pos>
        <strand>+</strand>
        <context>ATCCTGATGC[C/G]TGTCGAGTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGC</left_flank>
        <right_flank>TGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTATTGATTTGGTTTATCAAAAAATTTGAATAAGATTTAAAAAATTTGATTAAAATGCAAAAAATTTGACTAACATTCAGAAAATTTGACTGAAAATTGACTAAAATTCTACGAAAAAGTAAGAAAATTGACAGAAAAATAGCAAAGAAATATATTGAACATTTTCTAAAAGCAGAAAAAAGATCTAAGCATTTTCGAATCGTACCGGAAATTTTCAGAAGATGTTACCGTATTTCCTCTGATAGAACCCCACCCAACTTTGAGCACATCTATCTCAATTACTGTCAAAGATATCAAAAAGTCGTC</canonical>
            <polymorphic>AAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCSTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTATTGATTTGGTTTATCAAAAAATTTGAATAAGATTTAAAAAATTTGATTAAAATGCAAAAAATTTGACTAACATTCAGAAAATTTGACTGAAAATTGACTAAAATTCTACGAAAAAGTAAGAAAATTGACAGAAAAATAGCAAAGAAATATATTGAACATTTTCTAAAAGCAGAAAAAAGATCTAAGCATTTTCGAATCGTACCGGAAATTTTCAGAAGATGTTACCGTATTTCCTCTGATAGAACCCCACCCAACTTTGAGCACATCTATCTCAATTACTGTCAAAGATATCAAAAAGTCGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>298 144 117 116 84 53 40 34 24 22 21 16 14 13 2 2</canonical_bands>
                <polymorphic_bands>298 260 117 84 53 40 34 24 22 21 16 14 13 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATGGTACTTAGGAACTCAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTGAAAAATGTTGAGGTCATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAG</canonical_amplicon>
		<polymorphic_amplicon>TGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCSTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11339</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>148085</contig_pos>
        <strand>+</strand>
        <context>TGAAACTAGT[C/G]TGATGGTACT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGT</left_flank>
        <right_flank>TGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGGGACTTCGCATGTATCTGGCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTATTGATTTGGTTTATCAAAAAATTTGAATAAGATTTAAAAAATTTGATTAAAATGCAAAAAATTTGACTAACATTCAGAAAATTTGACTGAAAATTGACTAAAATTCTACGAAAAAGTAAGAAAATTGACAGAAAAATAGCAAAGAAATATATTGAACATTTTCTAAAAGCAGAAAAAAGATCTAAGC</canonical>
            <polymorphic>ATTGGGACTTCGCATGTATCTGGCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTSTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTATTGATTTGGTTTATCAAAAAATTTGAATAAGATTTAAAAAATTTGATTAAAATGCAAAAAATTTGACTAACATTCAGAAAATTTGACTGAAAATTGACTAAAATTCTACGAAAAAGTAAGAAAATTGACAGAAAAATAGCAAAGAAATATATTGAACATTTTCTAAAAGCAGAAAAAAGATCTAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>236 144 117 116 84 77 53 36 34 24 22 21 19 13 2 2</canonical_bands>
                <polymorphic_bands>236 144 142 117 84 77 53 36 34 22 21 19 13 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGCTCATTAATGGACAGACTC</pcr_primer_p1>
		<pcr_primer_p2>CAGGAGACGAGAAGAAAACTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTG</canonical_amplicon>
		<polymorphic_amplicon>GTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTSTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11340</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>148014</contig_pos>
        <strand>+</strand>
        <context>CAACTGCTGA[A/C]GAAAGGATGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGA</left_flank>
        <right_flank>GAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCCCCTTTTCCGTGTCTCTGCCATTAAAATCATCAATCGTGGCTCTGATCGAAATCCGTTCCATTATCGATTGGGACTTCGCATGTATCTGGCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTATTGATTTGGTTTATCAAAAAATTTGAATAAGATTTAAAAAATTTGATTAAAATGCAAAAAATTTGACTAACATTCAGAAAATTTGACTGAAAATTGACTAAAATTCTACGAAAAAG</canonical>
            <polymorphic>CTCCCCCTTTTCCGTGTCTCTGCCATTAAAATCATCAATCGTGGCTCTGATCGAAATCCGTTCCATTATCGATTGGGACTTCGCATGTATCTGGCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGAMGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTATTGATTTGGTTTATCAAAAAATTTGAATAAGATTTAAAAAATTTGATTAAAATGCAAAAAATTTGACTAACATTCAGAAAATTTGACTGAAAATTGACTAAAATTCTACGAAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGCTCATTAATGGACAGACTC</pcr_primer_p1>
		<pcr_primer_p2>CAAACATTTTAGTATCACTTTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTG</canonical_amplicon>
		<polymorphic_amplicon>GTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGAMGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11341</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>147971</contig_pos>
        <strand></strand>
        <context>ATGGGACGAA[T/C]YCACGGAACG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAA</left_flank>
        <right_flank>CCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATAGAAGGCTCTTCAGATTCTGTCCAGGACAGACGCTGGGTCTCCCCCTTTTCCGTGTCTCTGCCATTAAAATCATCAATCGTGGCTCTGATCGAAATCCGTTCCATTATCGATTGGGACTTCGCATGTATCTGGCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTATTGATTTGGTTTATCAAAAAATTTGAATAAGATTTAAAAAATTTGATTAAAATGCAAAAAATTTGACTAACAT</canonical>
            <polymorphic>ATATAGAAGGCTCTTCAGATTCTGTCCAGGACAGACGCTGGGTCTCCCCCTTTTCCGTGTCTCTGCCATTAAAATCATCAATCGTGGCTCTGATCGAAATCCGTTCCATTATCGATTGGGACTTCGCATGTATCTGGCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAAYCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTATTGATTTGGTTTATCAAAAAATTTGAATAAGATTTAAAAAATTTGATTAAAATGCAAAAAATTTGACTAACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>471 241 119 86 33 32 18</canonical_bands>
                <polymorphic_bands>471 241 119 118 33 18</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 241 152 86 18</canonical_bands>
                <polymorphic_bands>589 241 152 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGCTCATTAATGGACAGACTC</pcr_primer_p1>
		<pcr_primer_p2>CAAACATTTTAGTATCACTTTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTG</canonical_amplicon>
		<polymorphic_amplicon>GTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAAYCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11343</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>147941</contig_pos>
        <strand></strand>
        <context>TTCTCATCYA[C/T]CCATCAACAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCA</left_flank>
        <right_flank>CCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATTGCATCATCTTTCGATAGAGCATGGGATATAGAAGGCTCTTCAGATTCTGTCCAGGACAGACGCTGGGTCTCCCCCTTTTCCGTGTCTCTGCCATTAAAATCATCAATCGTGGCTCTGATCGAAATCCGTTCCATTATCGATTGGGACTTCGCATGTATCTGGCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTATTGATTTGGTTTATCAAAAAATTTGAATAAGATTTAAAAAATT</canonical>
            <polymorphic>GGATTGCATCATCTTTCGATAGAGCATGGGATATAGAAGGCTCTTCAGATTCTGTCCAGGACAGACGCTGGGTCTCCCCCTTTTCCGTGTCTCTGCCATTAAAATCATCAATCGTGGCTCTGATCGAAATCCGTTCCATTATCGATTGGGACTTCGCATGTATCTGGCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCAYCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTATTGATTTGGTTTATCAAAAAATTTGAATAAGATTTAAAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>144 117 116 92 89 84 77 64 53 34 27 24 22 21 19 13 2 2</canonical_bands>
                <polymorphic_bands>144 130 116 92 89 84 77 64 53 34 27 24 22 21 19 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGCTCATTAATGGACAGACTC</pcr_primer_p1>
		<pcr_primer_p2>CAAACATTTTAGTATCACTTTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTG</canonical_amplicon>
		<polymorphic_amplicon>GTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCAYCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11344</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>147939</contig_pos>
        <strand></strand>
        <context>CATTCTCATC[C/T]AYCCATCAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATC</left_flank>
        <right_flank>ACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCA</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGGATTGCATCATCTTTCGATAGAGCATGGGATATAGAAGGCTCTTCAGATTCTGTCCAGGACAGACGCTGGGTCTCCCCCTTTTCCGTGTCTCTGCCATTAAAATCATCAATCGTGGCTCTGATCGAAATCCGTTCCATTATCGATTGGGACTTCGCATGTATCTGGCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTATTGATTTGGTTTATCAAAAAATTTGAATAAGATTTAAAAAA</canonical>
            <polymorphic>AAGGATTGCATCATCTTTCGATAGAGCATGGGATATAGAAGGCTCTTCAGATTCTGTCCAGGACAGACGCTGGGTCTCCCCCTTTTCCGTGTCTCTGCCATTAAAATCATCAATCGTGGCTCTGATCGAAATCCGTTCCATTATCGATTGGGACTTCGCATGTATCTGGCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCYACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTATTGATTTGGTTTATCAAAAAATTTGAATAAGATTTAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>144 117 116 91 90 84 77 64 53 34 27 24 22 21 19 13 2 2</canonical_bands>
                <polymorphic_bands>144 130 116 91 90 84 77 64 53 34 27 24 22 21 19 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGCTCATTAATGGACAGACTC</pcr_primer_p1>
		<pcr_primer_p2>CAAACATTTTAGTATCACTTTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTG</canonical_amplicon>
		<polymorphic_amplicon>GTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCYACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11345</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>147921</contig_pos>
        <strand></strand>
        <context>AAAATCTAGG[G/A]AGGACATCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGG</left_flank>
        <right_flank>AGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGGATCGCTAAGTCTCAAGGATTGCATCATCTTTCGATAGAGCATGGGATATAGAAGGCTCTTCAGATTCTGTCCAGGACAGACGCTGGGTCTCCCCCTTTTCCGTGTCTCTGCCATTAAAATCATCAATCGTGGCTCTGATCGAAATCCGTTCCATTATCGATTGGGACTTCGCATGTATCTGGCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTATTGATTTGGTTTATCAAAAAATT</canonical>
            <polymorphic>ATAGGATCGCTAAGTCTCAAGGATTGCATCATCTTTCGATAGAGCATGGGATATAGAAGGCTCTTCAGATTCTGTCCAGGACAGACGCTGGGTCTCCCCCTTTTCCGTGTCTCTGCCATTAAAATCATCAATCGTGGCTCTGATCGAAATCCGTTCCATTATCGATTGGGACTTCGCATGTATCTGGCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGRAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTATTGATTTGGTTTATCAAAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGCTCATTAATGGACAGACTC</pcr_primer_p1>
		<pcr_primer_p2>CAAACATTTTAGTATCACTTTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTG</canonical_amplicon>
		<polymorphic_amplicon>GTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGRAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11346</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>147899</contig_pos>
        <strand>+</strand>
        <context>GGAAAGGWTA[A/C]TAGGATTGCY</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTA</left_flank>
        <right_flank>TAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGAATTCCATTCGGATGACTCATAGGATCGCTAAGTCTCAAGGATTGCATCATCTTTCGATAGAGCATGGGATATAGAAGGCTCTTCAGATTCTGTCCAGGACAGACGCTGGGTCTCCCCCTTTTCCGTGTCTCTGCCATTAAAATCATCAATCGTGGCTCTGATCGAAATCCGTTCCATTATCGATTGGGACTTCGCATGTATCTGGCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTAT</canonical>
            <polymorphic>CCGAATTCCATTCGGATGACTCATAGGATCGCTAAGTCTCAAGGATTGCATCATCTTTCGATAGAGCATGGGATATAGAAGGCTCTTCAGATTCTGTCCAGGACAGACGCTGGGTCTCCCCCTTTTCCGTGTCTCTGCCATTAAAATCATCAATCGTGGCTCTGATCGAAATCCGTTCCATTATCGATTGGGACTTCGCATGTATCTGGCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTAMTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>319 217 164 95 74 57 40 17 17</canonical_bands>
                <polymorphic_bands>319 217 164 95 74 57 57 17</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGCTCATTAATGGACAGACTC</pcr_primer_p1>
		<pcr_primer_p2>CAAACATTTTAGTATCACTTTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTG</canonical_amplicon>
		<polymorphic_amplicon>GTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTAMTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11347</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>147896</contig_pos>
        <strand>+</strand>
        <context>CAAGGAAAGG[A/T]TAMTAGGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGG</left_flank>
        <right_flank>TACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCCGAATTCCATTCGGATGACTCATAGGATCGCTAAGTCTCAAGGATTGCATCATCTTTCGATAGAGCATGGGATATAGAAGGCTCTTCAGATTCTGTCCAGGACAGACGCTGGGTCTCCCCCTTTTCCGTGTCTCTGCCATTAAAATCATCAATCGTGGCTCTGATCGAAATCCGTTCCATTATCGATTGGGACTTCGCATGTATCTGGCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATG</canonical>
            <polymorphic>CATCCGAATTCCATTCGGATGACTCATAGGATCGCTAAGTCTCAAGGATTGCATCATCTTTCGATAGAGCATGGGATATAGAAGGCTCTTCAGATTCTGTCCAGGACAGACGCTGGGTCTCCCCCTTTTCCGTGTCTCTGCCATTAAAATCATCAATCGTGGCTCTGATCGAAATCCGTTCCATTATCGATTGGGACTTCGCATGTATCTGGCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGWTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGCTCATTAATGGACAGACTC</pcr_primer_p1>
		<pcr_primer_p2>CAAACATTTTAGTATCACTTTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTG</canonical_amplicon>
		<polymorphic_amplicon>GTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGWTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11348</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>147880</contig_pos>
        <strand>+</strand>
        <context>AGGRCTACTG[C/T]AGATTCAAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTG</left_flank>
        <right_flank>AGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGACATTCCTAAGGTTCATCCGAATTCCATTCGGATGACTCATAGGATCGCTAAGTCTCAAGGATTGCATCATCTTTCGATAGAGCATGGGATATAGAAGGCTCTTCAGATTCTGTCCAGGACAGACGCTGGGTCTCCCCCTTTTCCGTGTCTCTGCCATTAAAATCATCAATCGTGGCTCTGATCGAAATCCGTTCCATTATCGATTGGGACTTCGCATGTATCTGGCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGAT</canonical>
            <polymorphic>GGACATTCCTAAGGTTCATCCGAATTCCATTCGGATGACTCATAGGATCGCTAAGTCTCAAGGATTGCATCATCTTTCGATAGAGCATGGGATATAGAAGGCTCTTCAGATTCTGTCCAGGACAGACGCTGGGTCTCCCCCTTTTCCGTGTCTCTGCCATTAAAATCATCAATCGTGGCTCTGATCGAAATCCGTTCCATTATCGATTGGGACTTCGCATGTATCTGGCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGYAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>345 269 234 152</canonical_bands>
                <polymorphic_bands>386 345 269</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>418 239 160 72 48 32 31</canonical_bands>
                <polymorphic_bands>418 239 160 120 32 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTAGCTCATTAATGGACAGA</pcr_primer_p1>
		<pcr_primer_p2>CAAACATTTTAGTATCACTTTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTG</canonical_amplicon>
		<polymorphic_amplicon>GGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGYAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11349</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>147873</contig_pos>
        <strand>+</strand>
        <context>AGGAAGGAGG[A/G]CTACTGYAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGG</left_flank>
        <right_flank>CTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTATTTGGACATTCCTAAGGTTCATCCGAATTCCATTCGGATGACTCATAGGATCGCTAAGTCTCAAGGATTGCATCATCTTTCGATAGAGCATGGGATATAGAAGGCTCTTCAGATTCTGTCCAGGACAGACGCTGGGTCTCCCCCTTTTCCGTGTCTCTGCCATTAAAATCATCAATCGTGGCTCTGATCGAAATCCGTTCCATTATCGATTGGGACTTCGCATGTATCTGGCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCT</canonical>
            <polymorphic>CTTATTTGGACATTCCTAAGGTTCATCCGAATTCCATTCGGATGACTCATAGGATCGCTAAGTCTCAAGGATTGCATCATCTTTCGATAGAGCATGGGATATAGAAGGCTCTTCAGATTCTGTCCAGGACAGACGCTGGGTCTCCCCCTTTTCCGTGTCTCTGCCATTAAAATCATCAATCGTGGCTCTGATCGAAATCCGTTCCATTATCGATTGGGACTTCGCATGTATCTGGCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGRCTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGATACTAGGATTGCCTAAAA</pcr_primer_p1>
		<pcr_primer_p2>CATTAATGAGCTACCGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATG</canonical_amplicon>
		<polymorphic_amplicon>AAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGRCTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11350</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>149215</contig_pos>
        <strand>+</strand>
        <context>ATAATTTGCT[A/T]GAAAAATGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTATGCTCGAATAAGATGCCTAGAATGTTTTCAAGAAATAATTTGCT</left_flank>
        <right_flank>GAAAAATGCAGGAAAAATGAGAGGAAATAGGAAAAATAATGATGATCAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTGATATTGTGATAAATAGTTTATTAGTTTACAGCTTTCTGGTATCTTCTACAAGAATTGAGATTATGTGGCGCCAAAATCCGGGTGTTCTTTTTTCCTCGGTGCTGCAGAACCCTAACCTACCTCTTGATGGTAACATCATCATTTCATCTGCTTCCTAATTTTCGTCATTTCGGAAACAATAAATTGGAATCTTCGTGGCTATCCTATGGATTTGTGAGACTGATTCTCTTCGACTTGTTTGTTTCAGCAAGTTCGGGCCACAAACGGACGATGGGCAGCTCTGGAGATGAATTGAGTTTTTAAAGTGAACTTTTCGCATTATAATCTACCCATTGCTTTTATCCTGGACCTTGTTGAACTCCTTGAATGCCTCTAGAAGACACAGAATGGGTTGGTGGCACTTGAAGTTTGGTGGTAGGCGATGATTGGGGACCTGGAAACTTCAATTTATGCTCGAATAAGATGCCTAGAATGTTTTCAAGAAATAATTTGCTTGAAAAATGCAGGAAAAATGAGAGGAAATAGGAAAAATAATGATGATCAACTATTAAATTCAATTGGCGTCTAGAGTAGATCAAATGAATGAAAAATCAAACGTCTAGAGTAGATCAGTAGATCAAATCAAATGATGAACAAATGATCAAATCCCTACATGAGTAAAAAAAGTTTTCTCGAAAATTAACTTTTTTGTATTTTGCGGAAAAAAAAGAAGAAACAGAAAAACAAAGAAAGAAGGGGACAAGAGAAGAAAAATCAATAACCATGGATCGACATTGCAATGCCCGAGGGAAGGTTAAACATGGACTTTGCGAAAAAGGGGGGGGGGGTGGCAAAAGGCAATAAGTGGGACTAGGCGAGGTGAACACACCTATATTTGACGGGATCCAATCAATTAAAAAAAAATTTAAAAAATTTAAAGAAGGGACCCAGGGATTGGTTTTTTAAATCATACCTAGTTTTTTTAGGTCGTGACCTAGATTTTTAGGTCGTGACCT</canonical>
            <polymorphic>TGGTGATATTGTGATAAATAGTTTATTAGTTTACAGCTTTCTGGTATCTTCTACAAGAATTGAGATTATGTGGCGCCAAAATCCGGGTGTTCTTTTTTCCTCGGTGCTGCAGAACCCTAACCTACCTCTTGATGGTAACATCATCATTTCATCTGCTTCCTAATTTTCGTCATTTCGGAAACAATAAATTGGAATCTTCGTGGCTATCCTATGGATTTGTGAGACTGATTCTCTTCGACTTGTTTGTTTCAGCAAGTTCGGGCCACAAACGGACGATGGGCAGCTCTGGAGATGAATTGAGTTTTTAAAGTGAACTTTTCGCATTATAATCTACCCATTGCTTTTATCCTGGACCTTGTTGAACTCCTTGAATGCCTCTAGAAGACACAGAATGGGTTGGTGGCACTTGAAGTTTGGTGGTAGGCGATGATTGGGGACCTGGAAACTTCAATTTATGCTCGAATAAGATGCCTAGAATGTTTTCAAGAAATAATTTGCTWGAAAAATGCAGGAAAAATGAGAGGAAATAGGAAAAATAATGATGATCAACTATTAAATTCAATTGGCGTCTAGAGTAGATCAAATGAATGAAAAATCAAACGTCTAGAGTAGATCAGTAGATCAAATCAAATGATGAACAAATGATCAAATCCCTACATGAGTAAAAAAAGTTTTCTCGAAAATTAACTTTTTTGTATTTTGCGGAAAAAAAAGAAGAAACAGAAAAACAAAGAAAGAAGGGGACAAGAGAAGAAAAATCAATAACCATGGATCGACATTGCAATGCCCGAGGGAAGGTTAAACATGGACTTTGCGAAAAAGGGGGGGGGGGTGGCAAAAGGCAATAAGTGGGACTAGGCGAGGTGAACACACCTATATTTGACGGGATCCAATCAATTAAAAAAAAATTTAAAAAATTTAAAGAAGGGACCCAGGGATTGGTTTTTTAAATCATACCTAGTTTTTTTAGGTCGTGACCTAGATTTTTAGGTCGTGACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTTGTTGAACTCCTTGAAT</pcr_primer_p1>
		<pcr_primer_p2>GTTTGATTTTTCATTCATTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACCTTGTTGAACTCCTTGAATGCCTCTAGAAGACACAGAATGGGTTGGTGGCACTTGAAGTTTGGTGGTAGGCGATGATTGGGGACCTGGAAACTTCAATTTATGCTCGAATAAGATGCCTAGAATGTTTTCAAGAAATAATTTGCTTGAAAAATGCAGGAAAAATGAGAGGAAATAGGAAAAATAATGATGATCAACTATTAAATTCAATTGGCGTCTAGAGTAGATCAAATGAATGAAAAATCAAAC</canonical_amplicon>
		<polymorphic_amplicon>ACCTTGTTGAACTCCTTGAATGCCTCTAGAAGACACAGAATGGGTTGGTGGCACTTGAAGTTTGGTGGTAGGCGATGATTGGGGACCTGGAAACTTCAATTTATGCTCGAATAAGATGCCTAGAATGTTTTCAAGAAATAATTTGCTWGAAAAATGCAGGAAAAATGAGAGGAAATAGGAAAAATAATGATGATCAACTATTAAATTCAATTGGCGTCTAGAGTAGATCAAATGAATGAAAAATCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11351</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>148788</contig_pos>
        <strand></strand>
        <context>agattatgtg[G/C]cgccaaaatC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TTATTAGTTTACAGCTTTCTGGTATCTTCTACAAGAATTGAGATTATGTG</left_flank>
        <right_flank>CGCCAAAATCCGGGTGTTCTTTTTTCCTCGGTGCTGCAGAACCCTAACCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTATTGATTTGGTTTATCAAAAAATTTGAATAAGATTTAAAAAATTTGATTAAAATGCAAAAAATTTGACTAACATTCAGAAAATTTGACTGAAAATTGACTAAAATTCTACGAAAAAGTAAGAAAATTGACAGAAAAATAGCAAAGAAATATATTGAACATTTTCTAAAAGCAGAAAAAAGATCTAAGCATTTTCGAATCGTACCGGAAATTTTCAGAAGATGTTACCGTATTTCCTCTGATAGAACCCCACCCAACTTTGAGCACATCTATCTCAATTACTGTCAAAGATATCAAAAAGTCGTCCACTAATAAAATATTGGTGATATTGTGATAAATAGTTTATTAGTTTACAGCTTTCTGGTATCTTCTACAAGAATTGAGATTATGTGGCGCCAAAATCCGGGTGTTCTTTTTTCCTCGGTGCTGCAGAACCCTAACCTACCTCTTGATGGTAACATCATCATTTCATCTGCTTCCTAATTTTCGTCATTTCGGAAACAATAAATTGGAATCTTCGTGGCTATCCTATGGATTTGTGAGACTGATTCTCTTCGACTTGTTTGTTTCAGCAAGTTCGGGCCACAAACGGACGATGGGCAGCTCTGGAGATGAATTGAGTTTTTAAAGTGAACTTTTCGCATTATAATCTACCCATTGCTTTTATCCTGGACCTTGTTGAACTCCTTGAATGCCTCTAGAAGACACAGAATGGGTTGGTGGCACTTGAAGTTTGGTGGTAGGCGATGATTGGGGACCTGGAAACTTCAATTTATGCTCGAATAAGATGCCTAGAATGTTTTCAAGAAATAATTTGCTTGAAAAATGCAGGAAAAATGAGAGGAAATAGGAAAAATAATGATGATCAACTATTAAATTCAATTGGCGTCTAG</canonical>
            <polymorphic>CATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTATTGATTTGGTTTATCAAAAAATTTGAATAAGATTTAAAAAATTTGATTAAAATGCAAAAAATTTGACTAACATTCAGAAAATTTGACTGAAAATTGACTAAAATTCTACGAAAAAGTAAGAAAATTGACAGAAAAATAGCAAAGAAATATATTGAACATTTTCTAAAAGCAGAAAAAAGATCTAAGCATTTTCGAATCGTACCGGAAATTTTCAGAAGATGTTACCGTATTTCCTCTGATAGAACCCCACCCAACTTTGAGCACATCTATCTCAATTACTGTCAAAGATATCAAAAAGTCGTCCACTAATAAAATATTGGTGATATTGTGATAAATAGTTTATTAGTTTACAGCTTTCTGGTATCTTCTACAAGAATTGAGATTATGTGSCGCCAAAATCCGGGTGTTCTTTTTTCCTCGGTGCTGCAGAACCCTAACCTACCTCTTGATGGTAACATCATCATTTCATCTGCTTCCTAATTTTCGTCATTTCGGAAACAATAAATTGGAATCTTCGTGGCTATCCTATGGATTTGTGAGACTGATTCTCTTCGACTTGTTTGTTTCAGCAAGTTCGGGCCACAAACGGACGATGGGCAGCTCTGGAGATGAATTGAGTTTTTAAAGTGAACTTTTCGCATTATAATCTACCCATTGCTTTTATCCTGGACCTTGTTGAACTCCTTGAATGCCTCTAGAAGACACAGAATGGGTTGGTGGCACTTGAAGTTTGGTGGTAGGCGATGATTGGGGACCTGGAAACTTCAATTTATGCTCGAATAAGATGCCTAGAATGTTTTCAAGAAATAATTTGCTTGAAAAATGCAGGAAAAATGAGAGGAAATAGGAAAAATAATGATGATCAACTATTAAATTCAATTGGCGTCTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>500 493 7</canonical_bands>
                <polymorphic_bands>993 7</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCGCC</site>
                <isoschizomers>
                    <enzyme>BbeI</enzyme>
                    <enzyme>EgeI</enzyme>
                    <enzyme>EheI</enzyme>
                    <enzyme>KasI</enzyme>
                    <enzyme>Mly113I</enzyme>
                    <enzyme>NarI</enzyme>
                    <enzyme>SfoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>501 362 137</canonical_bands>
                <polymorphic_bands>863 137</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTAAGCATTTTCGAATCGT</pcr_primer_p1>
		<pcr_primer_p2>ATCAAGAGGTAGGTTAGGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>ATCTAAGCATTTTCGAATCGTACCGGAAATTTTCAGAAGATGTTACCGTATTTCCTCTGATAGAACCCCACCCAACTTTGAGCACATCTATCTCAATTACTGTCAAAGATATCAAAAAGTCGTCCACTAATAAAATATTGGTGATATTGTGATAAATAGTTTATTAGTTTACAGCTTTCTGGTATCTTCTACAAGAATTGAGATTATGTGGCGCCAAAATCCGGGTGTTCTTTTTTCCTCGGTGCTGCAGAACCCTAACCTACCTCTTGAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTAAGCATTTTCGAATCGTACCGGAAATTTTCAGAAGATGTTACCGTATTTCCTCTGATAGAACCCCACCCAACTTTGAGCACATCTATCTCAATTACTGTCAAAGATATCAAAAAGTCGTCCACTAATAAAATATTGGTGATATTGTGATAAATAGTTTATTAGTTTACAGCTTTCTGGTATCTTCTACAAGAATTGAGATTATGTGSCGCCAAAATCCGGGTGTTCTTTTTTCCTCGGTGCTGCAGAACCCTAACCTACCTCTTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11352</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>148759</contig_pos>
        <strand></strand>
        <context>cagctttctg[G/A]tatcttctac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAATATTGGTGATATTGTGATAAATAGTTTATTAGTTTACAGCTTTCTG</left_flank>
        <right_flank>TATCTTCTACAAGAATTGAGATTATGTGGCGCCAAAATCCGGGTGTTCTT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTATTGATTTGGTTTATCAAAAAATTTGAATAAGATTTAAAAAATTTGATTAAAATGCAAAAAATTTGACTAACATTCAGAAAATTTGACTGAAAATTGACTAAAATTCTACGAAAAAGTAAGAAAATTGACAGAAAAATAGCAAAGAAATATATTGAACATTTTCTAAAAGCAGAAAAAAGATCTAAGCATTTTCGAATCGTACCGGAAATTTTCAGAAGATGTTACCGTATTTCCTCTGATAGAACCCCACCCAACTTTGAGCACATCTATCTCAATTACTGTCAAAGATATCAAAAAGTCGTCCACTAATAAAATATTGGTGATATTGTGATAAATAGTTTATTAGTTTACAGCTTTCTGGTATCTTCTACAAGAATTGAGATTATGTGGCGCCAAAATCCGGGTGTTCTTTTTTCCTCGGTGCTGCAGAACCCTAACCTACCTCTTGATGGTAACATCATCATTTCATCTGCTTCCTAATTTTCGTCATTTCGGAAACAATAAATTGGAATCTTCGTGGCTATCCTATGGATTTGTGAGACTGATTCTCTTCGACTTGTTTGTTTCAGCAAGTTCGGGCCACAAACGGACGATGGGCAGCTCTGGAGATGAATTGAGTTTTTAAAGTGAACTTTTCGCATTATAATCTACCCATTGCTTTTATCCTGGACCTTGTTGAACTCCTTGAATGCCTCTAGAAGACACAGAATGGGTTGGTGGCACTTGAAGTTTGGTGGTAGGCGATGATTGGGGACCTGGAAACTTCAATTTATGCTCGAATAAGATGCCTAGAATGTTTTCAAGAAATAATTTGCTTGAAAAATGCAGGAAAAATGAGAGGAAATAGGAAAAATAATGATG</canonical>
            <polymorphic>TGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTATTGATTTGGTTTATCAAAAAATTTGAATAAGATTTAAAAAATTTGATTAAAATGCAAAAAATTTGACTAACATTCAGAAAATTTGACTGAAAATTGACTAAAATTCTACGAAAAAGTAAGAAAATTGACAGAAAAATAGCAAAGAAATATATTGAACATTTTCTAAAAGCAGAAAAAAGATCTAAGCATTTTCGAATCGTACCGGAAATTTTCAGAAGATGTTACCGTATTTCCTCTGATAGAACCCCACCCAACTTTGAGCACATCTATCTCAATTACTGTCAAAGATATCAAAAAGTCGTCCACTAATAAAATATTGGTGATATTGTGATAAATAGTTTATTAGTTTACAGCTTTCTGRTATCTTCTACAAGAATTGAGATTATGTGGCGCCAAAATCCGGGTGTTCTTTTTTCCTCGGTGCTGCAGAACCCTAACCTACCTCTTGATGGTAACATCATCATTTCATCTGCTTCCTAATTTTCGTCATTTCGGAAACAATAAATTGGAATCTTCGTGGCTATCCTATGGATTTGTGAGACTGATTCTCTTCGACTTGTTTGTTTCAGCAAGTTCGGGCCACAAACGGACGATGGGCAGCTCTGGAGATGAATTGAGTTTTTAAAGTGAACTTTTCGCATTATAATCTACCCATTGCTTTTATCCTGGACCTTGTTGAACTCCTTGAATGCCTCTAGAAGACACAGAATGGGTTGGTGGCACTTGAAGTTTGGTGGTAGGCGATGATTGGGGACCTGGAAACTTCAATTTATGCTCGAATAAGATGCCTAGAATGTTTTCAAGAAATAATTTGCTTGAAAAATGCAGGAAAAATGAGAGGAAATAGGAAAAATAATGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTAAGCATTTTCGAATCGT</pcr_primer_p1>
		<pcr_primer_p2>ATCAAGAGGTAGGTTAGGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>ATCTAAGCATTTTCGAATCGTACCGGAAATTTTCAGAAGATGTTACCGTATTTCCTCTGATAGAACCCCACCCAACTTTGAGCACATCTATCTCAATTACTGTCAAAGATATCAAAAAGTCGTCCACTAATAAAATATTGGTGATATTGTGATAAATAGTTTATTAGTTTACAGCTTTCTGGTATCTTCTACAAGAATTGAGATTATGTGGCGCCAAAATCCGGGTGTTCTTTTTTCCTCGGTGCTGCAGAACCCTAACCTACCTCTTGAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTAAGCATTTTCGAATCGTACCGGAAATTTTCAGAAGATGTTACCGTATTTCCTCTGATAGAACCCCACCCAACTTTGAGCACATCTATCTCAATTACTGTCAAAGATATCAAAAAGTCGTCCACTAATAAAATATTGGTGATATTGTGATAAATAGTTTATTAGTTTACAGCTTTCTGRTATCTTCTACAAGAATTGAGATTATGTGGCGCCAAAATCCGGGTGTTCTTTTTTCCTCGGTGCTGCAGAACCCTAACCTACCTCTTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11353</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>2159</contig_pos>
        <strand></strand>
        <context>AAACAATCAT[T/C]CCAATTCTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CGACGCCTTCACTGGCAATTCTTCTACGCCCTTGTTGCTCAAACAATCAT</left_flank>
        <right_flank>CCAATTCTTTTCATGCAAATTCCTATGACCCTGATCTACACATCTACCAT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCTCCTGGACAGCCAGTACCCCATTAAACTTCGTTTTCTGGTTTACTACGCCAGTGGCTCTGGCGTCATTCTATTCATATTTTGTATGGGTGTTTATGCAGAGGAATGAGTATACAGACAAAGTTTTGAGGTATGTTTTTTTTTCCGTTCTGAACCAAATAATGATAATGGAATTTCAGAGAAGTGGGTTACTGTAACGATCAAAAGTTCGGATTTCTGGGATTGATCTTCTATCCGAAATTGGCGAATGGGACGCAAATTGTAAACTGGGATTCGTTTATAGGAGTATCGGTGACCACTGGAACCTTGGTAAGAGAGATTTCATTCTAAATTTCTATGAATATAATTTTTCCAGCTTGCCTCCGAATTCACAATGATCTATTTCGCTTATAAATGTTTCCAAGCCACGAGAATCTTCATTATTCGCTCATGCTGCTCTCCGAAATCTCGACGCCTTCACTGGCAATTCTTCTACGCCCTTGTTGCTCAAACAATCATTCCAATTCTTTTCATGCAAATTCCTATGACCCTGATCTACACATCTACCATTGTTTTCAGAAGTTCCATTCCAGAAATAGGCCATTTCCAATCTCTAACCATCCCTATTTACCTTGCTATTGATGCCTTTCCTACTATTTTGATAGTTAGACCATATCGCGATACGGTAGTCAGGGTTATTTGCTTCTGGAGGAAACAAAAAATCGCGCCAAGGCTAACAAACTCTAGCAATTCAAAGTCTTTGCAACCGTCGATGTCTAATTTTTGATGTGTTTTGAATCTGAAAAAACCTAAAAATAAATGAATTGAATGTATTGAAAAACAGGAAGGAATGAATGAAACTTATTGATAACAATTACCAATATAAAAACGGCAATGGAATGTGAAAATAAACATTTTCTGCTGAAAATGAAAATGATTCGTATCATCCTTGCCTTCTCGCTGCTAGCTGCTGAGTGTTTGGCTATTCAAGGTAGGATTTTAGGTCATAATTCACTTCAA</canonical>
            <polymorphic>CGCTCCTGGACAGCCAGTACCCCATTAAACTTCGTTTTCTGGTTTACTACGCCAGTGGCTCTGGCGTCATTCTATTCATATTTTGTATGGGTGTTTATGCAGAGGAATGAGTATACAGACAAAGTTTTGAGGTATGTTTTTTTTTCCGTTCTGAACCAAATAATGATAATGGAATTTCAGAGAAGTGGGTTACTGTAACGATCAAAAGTTCGGATTTCTGGGATTGATCTTCTATCCGAAATTGGCGAATGGGACGCAAATTGTAAACTGGGATTCGTTTATAGGAGTATCGGTGACCACTGGAACCTTGGTAAGAGAGATTTCATTCTAAATTTCTATGAATATAATTTTTCCAGCTTGCCTCCGAATTCACAATGATCTATTTCGCTTATAAATGTTTCCAAGCCACGAGAATCTTCATTATTCGCTCATGCTGCTCTCCGAAATCTCGACGCCTTCACTGGCAATTCTTCTACGCCCTTGTTGCTCAAACAATCATYCCAATTCTTTTCATGCAAATTCCTATGACCCTGATCTACACATCTACCATTGTTTTCAGAAGTTCCATTCCAGAAATAGGCCATTTCCAATCTCTAACCATCCCTATTTACCTTGCTATTGATGCCTTTCCTACTATTTTGATAGTTAGACCATATCGCGATACGGTAGTCAGGGTTATTTGCTTCTGGAGGAAACAAAAAATCGCGCCAAGGCTAACAAACTCTAGCAATTCAAAGTCTTTGCAACCGTCGATGTCTAATTTTTGATGTGTTTTGAATCTGAAAAAACCTAAAAATAAATGAATTGAATGTATTGAAAAACAGGAAGGAATGAATGAAACTTATTGATAACAATTACCAATATAAAAACGGCAATGGAATGTGAAAATAAACATTTTCTGCTGAAAATGAAAATGATTCGTATCATCCTTGCCTTCTCGCTGCTAGCTGCTGAGTGTTTGGCTATTCAAGGTAGGATTTTAGGTCATAATTCACTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTTGGTAAGAGAGATTTCATT</pcr_primer_p1>
		<pcr_primer_p2>AAACAATGGTAGATGTGTAGATCA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACCTTGGTAAGAGAGATTTCATTCTAAATTTCTATGAATATAATTTTTCCAGCTTGCCTCCGAATTCACAATGATCTATTTCGCTTATAAATGTTTCCAAGCCACGAGAATCTTCATTATTCGCTCATGCTGCTCTCCGAAATCTCGACGCCTTCACTGGCAATTCTTCTACGCCCTTGTTGCTCAAACAATCATTCCAATTCTTTTCATGCAAATTCCTATGACCCTGATCTACACATCTACCATTGTTT</canonical_amplicon>
		<polymorphic_amplicon>ACCTTGGTAAGAGAGATTTCATTCTAAATTTCTATGAATATAATTTTTCCAGCTTGCCTCCGAATTCACAATGATCTATTTCGCTTATAAATGTTTCCAAGCCACGAGAATCTTCATTATTCGCTCATGCTGCTCTCCGAAATCTCGACGCCTTCACTGGCAATTCTTCTACGCCCTTGTTGCTCAAACAATCATYCCAATTCTTTTCATGCAAATTCCTATGACCCTGATCTACACATCTACCATTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11354</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>2288</contig_pos>
        <strand></strand>
        <context>TTGATGCCTT[T/G]CCTACTATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GGCCATTTCCAATCTCTAACCATCCCTATTTACCTTGCTATTGATGCCTT</left_flank>
        <right_flank>CCTACTATTTTGATAGTTAGACCATATCGCGATACGGTAGTCAGGGTTAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTATGTTTTTTTTTCCGTTCTGAACCAAATAATGATAATGGAATTTCAGAGAAGTGGGTTACTGTAACGATCAAAAGTTCGGATTTCTGGGATTGATCTTCTATCCGAAATTGGCGAATGGGACGCAAATTGTAAACTGGGATTCGTTTATAGGAGTATCGGTGACCACTGGAACCTTGGTAAGAGAGATTTCATTCTAAATTTCTATGAATATAATTTTTCCAGCTTGCCTCCGAATTCACAATGATCTATTTCGCTTATAAATGTTTCCAAGCCACGAGAATCTTCATTATTCGCTCATGCTGCTCTCCGAAATCTCGACGCCTTCACTGGCAATTCTTCTACGCCCTTGTTGCTCAAACAATCATTCCAATTCTTTTCATGCAAATTCCTATGACCCTGATCTACACATCTACCATTGTTTTCAGAAGTTCCATTCCAGAAATAGGCCATTTCCAATCTCTAACCATCCCTATTTACCTTGCTATTGATGCCTTTCCTACTATTTTGATAGTTAGACCATATCGCGATACGGTAGTCAGGGTTATTTGCTTCTGGAGGAAACAAAAAATCGCGCCAAGGCTAACAAACTCTAGCAATTCAAAGTCTTTGCAACCGTCGATGTCTAATTTTTGATGTGTTTTGAATCTGAAAAAACCTAAAAATAAATGAATTGAATGTATTGAAAAACAGGAAGGAATGAATGAAACTTATTGATAACAATTACCAATATAAAAACGGCAATGGAATGTGAAAATAAACATTTTCTGCTGAAAATGAAAATGATTCGTATCATCCTTGCCTTCTCGCTGCTAGCTGCTGAGTGTTTGGCTATTCAAGGTAGGATTTTAGGTCATAATTCACTTCAAAATACAACTTTTAAACTGATGTGACATAGAATTTTGTACCGGGTGGTGTACACTTATCAAGACTGGTAAACACGGGTGTATCTTCAGACATAAGTATCCTGAGGAGCACGAAAATTGGTAGAAATGCAA</canonical>
            <polymorphic>AGGTATGTTTTTTTTTCCGTTCTGAACCAAATAATGATAATGGAATTTCAGAGAAGTGGGTTACTGTAACGATCAAAAGTTCGGATTTCTGGGATTGATCTTCTATCCGAAATTGGCGAATGGGACGCAAATTGTAAACTGGGATTCGTTTATAGGAGTATCGGTGACCACTGGAACCTTGGTAAGAGAGATTTCATTCTAAATTTCTATGAATATAATTTTTCCAGCTTGCCTCCGAATTCACAATGATCTATTTCGCTTATAAATGTTTCCAAGCCACGAGAATCTTCATTATTCGCTCATGCTGCTCTCCGAAATCTCGACGCCTTCACTGGCAATTCTTCTACGCCCTTGTTGCTCAAACAATCATTCCAATTCTTTTCATGCAAATTCCTATGACCCTGATCTACACATCTACCATTGTTTTCAGAAGTTCCATTCCAGAAATAGGCCATTTCCAATCTCTAACCATCCCTATTTACCTTGCTATTGATGCCTTKCCTACTATTTTGATAGTTAGACCATATCGCGATACGGTAGTCAGGGTTATTTGCTTCTGGAGGAAACAAAAAATCGCGCCAAGGCTAACAAACTCTAGCAATTCAAAGTCTTTGCAACCGTCGATGTCTAATTTTTGATGTGTTTTGAATCTGAAAAAACCTAAAAATAAATGAATTGAATGTATTGAAAAACAGGAAGGAATGAATGAAACTTATTGATAACAATTACCAATATAAAAACGGCAATGGAATGTGAAAATAAACATTTTCTGCTGAAAATGAAAATGATTCGTATCATCCTTGCCTTCTCGCTGCTAGCTGCTGAGTGTTTGGCTATTCAAGGTAGGATTTTAGGTCATAATTCACTTCAAAATACAACTTTTAAACTGATGTGACATAGAATTTTGTACCGGGTGGTGTACACTTATCAAGACTGGTAAACACGGGTGTATCTTCAGACATAAGTATCCTGAGGAGCACGAAAATTGGTAGAAATGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCCTGATCTACACATCTACC</pcr_primer_p1>
		<pcr_primer_p2>CAAAACACATCAAAAATTAGACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACCCTGATCTACACATCTACCATTGTTTTCAGAAGTTCCATTCCAGAAATAGGCCATTTCCAATCTCTAACCATCCCTATTTACCTTGCTATTGATGCCTTTCCTACTATTTTGATAGTTAGACCATATCGCGATACGGTAGTCAGGGTTATTTGCTTCTGGAGGAAACAAAAAATCGCGCCAAGGCTAACAAACTCTAGCAATTCAAAGTCTTTGCAACCGTCGATGTCTAATTTTTGATGTGTTTTG</canonical_amplicon>
		<polymorphic_amplicon>GACCCTGATCTACACATCTACCATTGTTTTCAGAAGTTCCATTCCAGAAATAGGCCATTTCCAATCTCTAACCATCCCTATTTACCTTGCTATTGATGCCTTKCCTACTATTTTGATAGTTAGACCATATCGCGATACGGTAGTCAGGGTTATTTGCTTCTGGAGGAAACAAAAAATCGCGCCAAGGCTAACAAACTCTAGCAATTCAAAGTCTTTGCAACCGTCGATGTCTAATTTTTGATGTGTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11355</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>2580</contig_pos>
        <strand></strand>
        <context>AAAATGATTC[G/A]TATCATCCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGCAATGGAATGTGAAAATAAACATTTTCTGCTGAAAATGAAAATGATTC</left_flank>
        <right_flank>TATCATCCTTGCCTTCTCGCTGCTAGCTGCTGAGTGTTTGGCTATTCAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTCGCTCATGCTGCTCTCCGAAATCTCGACGCCTTCACTGGCAATTCTTCTACGCCCTTGTTGCTCAAACAATCATTCCAATTCTTTTCATGCAAATTCCTATGACCCTGATCTACACATCTACCATTGTTTTCAGAAGTTCCATTCCAGAAATAGGCCATTTCCAATCTCTAACCATCCCTATTTACCTTGCTATTGATGCCTTTCCTACTATTTTGATAGTTAGACCATATCGCGATACGGTAGTCAGGGTTATTTGCTTCTGGAGGAAACAAAAAATCGCGCCAAGGCTAACAAACTCTAGCAATTCAAAGTCTTTGCAACCGTCGATGTCTAATTTTTGATGTGTTTTGAATCTGAAAAAACCTAAAAATAAATGAATTGAATGTATTGAAAAACAGGAAGGAATGAATGAAACTTATTGATAACAATTACCAATATAAAAACGGCAATGGAATGTGAAAATAAACATTTTCTGCTGAAAATGAAAATGATTCGTATCATCCTTGCCTTCTCGCTGCTAGCTGCTGAGTGTTTGGCTATTCAAGGTAGGATTTTAGGTCATAATTCACTTCAAAATACAACTTTTAAACTGATGTGACATAGAATTTTGTACCGGGTGGTGTACACTTATCAAGACTGGTAAACACGGGTGTATCTTCAGACATAAGTATCCTGAGGAGCACGAAAATTGGTAGAAATGCAATTTTACGTTTGATTCAGAGCTACTAAAAATTCCGAAGCGATTTCTCTAGTCTAGGTGTTGTTATGACCATTCAATGTCCGTTGTGAGTTTCATGAAATGATAGCTGATAGTGAGAACTTTGACAAGCGATAACTCAGCTTAAAGTTGATAAAATAATTGGAAACTTGGTTAGTTTACTGATGAATTATTGATATTTTCGCACTCTAAATTTGAGCACAGTACAACGCTTTACTTGAATTTTATGCTAGTACAAAGTTTAGTGTTTAGGTCTATGTACAGTATACCGTAAACA</canonical>
            <polymorphic>TATTCGCTCATGCTGCTCTCCGAAATCTCGACGCCTTCACTGGCAATTCTTCTACGCCCTTGTTGCTCAAACAATCATTCCAATTCTTTTCATGCAAATTCCTATGACCCTGATCTACACATCTACCATTGTTTTCAGAAGTTCCATTCCAGAAATAGGCCATTTCCAATCTCTAACCATCCCTATTTACCTTGCTATTGATGCCTTTCCTACTATTTTGATAGTTAGACCATATCGCGATACGGTAGTCAGGGTTATTTGCTTCTGGAGGAAACAAAAAATCGCGCCAAGGCTAACAAACTCTAGCAATTCAAAGTCTTTGCAACCGTCGATGTCTAATTTTTGATGTGTTTTGAATCTGAAAAAACCTAAAAATAAATGAATTGAATGTATTGAAAAACAGGAAGGAATGAATGAAACTTATTGATAACAATTACCAATATAAAAACGGCAATGGAATGTGAAAATAAACATTTTCTGCTGAAAATGAAAATGATTCRTATCATCCTTGCCTTCTCGCTGCTAGCTGCTGAGTGTTTGGCTATTCAAGGTAGGATTTTAGGTCATAATTCACTTCAAAATACAACTTTTAAACTGATGTGACATAGAATTTTGTACCGGGTGGTGTACACTTATCAAGACTGGTAAACACGGGTGTATCTTCAGACATAAGTATCCTGAGGAGCACGAAAATTGGTAGAAATGCAATTTTACGTTTGATTCAGAGCTACTAAAAATTCCGAAGCGATTTCTCTAGTCTAGGTGTTGTTATGACCATTCAATGTCCGTTGTGAGTTTCATGAAATGATAGCTGATAGTGAGAACTTTGACAAGCGATAACTCAGCTTAAAGTTGATAAAATAATTGGAAACTTGGTTAGTTTACTGATGAATTATTGATATTTTCGCACTCTAAATTTGAGCACAGTACAACGCTTTACTTGAATTTTATGCTAGTACAAAGTTTAGTGTTTAGGTCTATGTACAGTATACCGTAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCTAATTTTTGATGTGTTTTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAAGTGAATTATGACCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTCTAATTTTTGATGTGTTTTGAATCTGAAAAAACCTAAAAATAAATGAATTGAATGTATTGAAAAACAGGAAGGAATGAATGAAACTTATTGATAACAATTACCAATATAAAAACGGCAATGGAATGTGAAAATAAACATTTTCTGCTGAAAATGAAAATGATTCGTATCATCCTTGCCTTCTCGCTGCTAGCTGCTGAGTGTTTGGCTATTCAAGGTAGGATTTTAGGTCATAATTCACTTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGTCTAATTTTTGATGTGTTTTGAATCTGAAAAAACCTAAAAATAAATGAATTGAATGTATTGAAAAACAGGAAGGAATGAATGAAACTTATTGATAACAATTACCAATATAAAAACGGCAATGGAATGTGAAAATAAACATTTTCTGCTGAAAATGAAAATGATTCRTATCATCCTTGCCTTCTCGCTGCTAGCTGCTGAGTGTTTGGCTATTCAAGGTAGGATTTTAGGTCATAATTCACTTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11359</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>6134</contig_pos>
        <strand>+</strand>
        <context>ATCAATTTTC[A/G]TACAGCGCGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGAGTTCCGGTACGTATTTTGACATGATAGTGTGCAATGATCAATTTTC</left_flank>
        <right_flank>TACAGCGCGCGGCAATCGGCCTCAGCGTGGAAGAATTTTGGTTTTTTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTATTTTTTTGTAGTTCCGTGTAGCTAAACACAAAGTTATTATGATTTCATGTTTATTAAGGTCCGCCTACTTTTCTAAATTTTTATAAAGCTTCTGATATTTTGAATTCCAGGAAGCCATCATGTCCCGCCATTCTTCCCTCGAGCCCATCTACAGTACCCTTCAACGTTGCTTCATTGGAATTGGACTAATATCCAACTTGATTCTGATAAACCTTATCATTTTCCGATCTCCCAAAGATTTAGGACTCTATAAGTACCTAATGGCTTATATCATCTGTTTCGAACTATTCTACATTGTTTTGGAGTTTCTAACAGTTCCCGATTTGTTAACTCTGGACTATGCTTTCTTTATAATTGTTGATCCCGAGAAATCGTTGTTGCCAGAAAAATGGTCACAAGTGGCAGATTGTGAGTTTAGTTTTGGCTCAAAAGAGGGCAGTTCTTCGGAGTTCCGGTACGTATTTTGACATGATAGTGTGCAATGATCAATTTTCATACAGCGCGCGGCAATCGGCCTCAGCGTGGAAGAATTTTGGTTTTTTCAACCTAGGTTACTGTAGTTTGGGTTACTTCAGCTTCACTGTAGCTCTGTTAAAGCCATTCTACAGTATCCCTGGATCTTTTTTGAACATTTCGAGTTCTATTGAATAAATGTAGTTTGGGTTAGTGTATACCGTCACAAATCTAAATCTAGTTTTTTTCTGGTTTCCTGTGAAGTTCGGATTCTCCAAACCCACAGTAATCCGAACTTTAACAAGTTATCGCATCCCTGAATTCATATAGACTTGAGTAATTCCGTTTTTTTAAAGCTATAGGTACTGTACGATTTCTGTACTTTTTCAGCTTCCGAATTTAATGTCTTCATGAATTACTGTAGTTGTTTTTCCAAAACTTCCCCACTGCCAGGATAACTGTAGTTTCGGTTACTGTAGATCCTAACCTAGGAAAGCTTTTAGGCCACTGTAAGATTACTGTAACCTTTCAATTCCAAACCC</canonical>
            <polymorphic>AATTATTTTTTTGTAGTTCCGTGTAGCTAAACACAAAGTTATTATGATTTCATGTTTATTAAGGTCCGCCTACTTTTCTAAATTTTTATAAAGCTTCTGATATTTTGAATTCCAGGAAGCCATCATGTCCCGCCATTCTTCCCTCGAGCCCATCTACAGTACCCTTCAACGTTGCTTCATTGGAATTGGACTAATATCCAACTTGATTCTGATAAACCTTATCATTTTCCGATCTCCCAAAGATTTAGGACTCTATAAGTACCTAATGGCTTATATCATCTGTTTCGAACTATTCTACATTGTTTTGGAGTTTCTAACAGTTCCCGATTTGTTAACTCTGGACTATGCTTTCTTTATAATTGTTGATCCCGAGAAATCGTTGTTGCCAGAAAAATGGTCACAAGTGGCAGATTGTGAGTTTAGTTTTGGCTCAAAAGAGGGCAGTTCTTCGGAGTTCCGGTACGTATTTTGACATGATAGTGTGCAATGATCAATTTTCRTACAGCGCGCGGCAATCGGCCTCAGCGTGGAAGAATTTTGGTTTTTTCAACCTAGGTTACTGTAGTTTGGGTTACTTCAGCTTCACTGTAGCTCTGTTAAAGCCATTCTACAGTATCCCTGGATCTTTTTTGAACATTTCGAGTTCTATTGAATAAATGTAGTTTGGGTTAGTGTATACCGTCACAAATCTAAATCTAGTTTTTTTCTGGTTTCCTGTGAAGTTCGGATTCTCCAAACCCACAGTAATCCGAACTTTAACAAGTTATCGCATCCCTGAATTCATATAGACTTGAGTAATTCCGTTTTTTTAAAGCTATAGGTACTGTACGATTTCTGTACTTTTTCAGCTTCCGAATTTAATGTCTTCATGAATTACTGTAGTTGTTTTTCCAAAACTTCCCCACTGCCAGGATAACTGTAGTTTCGGTTACTGTAGATCCTAACCTAGGAAAGCTTTTAGGCCACTGTAAGATTACTGTAACCTTTCAATTCCAAACCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGGCAGATTGTGAGTTTAGT</pcr_primer_p1>
		<pcr_primer_p2>ATAGAACTCGAAATGTTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGTGGCAGATTGTGAGTTTAGTTTTGGCTCAAAAGAGGGCAGTTCTTCGGAGTTCCGGTACGTATTTTGACATGATAGTGTGCAATGATCAATTTTCATACAGCGCGCGGCAATCGGCCTCAGCGTGGAAGAATTTTGGTTTTTTCAACCTAGGTTACTGTAGTTTGGGTTACTTCAGCTTCACTGTAGCTCTGTTAAAGCCATTCTACAGTATCCCTGGATCTTTTTTGAACATTTCGAGTTCTAT</canonical_amplicon>
		<polymorphic_amplicon>AGTGGCAGATTGTGAGTTTAGTTTTGGCTCAAAAGAGGGCAGTTCTTCGGAGTTCCGGTACGTATTTTGACATGATAGTGTGCAATGATCAATTTTCRTACAGCGCGCGGCAATCGGCCTCAGCGTGGAAGAATTTTGGTTTTTTCAACCTAGGTTACTGTAGTTTGGGTTACTTCAGCTTCACTGTAGCTCTGTTAAAGCCATTCTACAGTATCCCTGGATCTTTTTTGAACATTTCGAGTTCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11360</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>6108</contig_pos>
        <strand>+</strand>
        <context>GTATTTTGAC[A/G]TGATAGTGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGGCTCAAAAGAGGGCAGTTCTTCGGAGTTCCGGTACGTATTTTGAC</left_flank>
        <right_flank>TGATAGTGTGCAATGATCAATTTTCATACAGCGCGCGGCAATCGGCCTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCACGGGTTGTGATTTTTGGTGCCAAATTATTTTTTTGTAGTTCCGTGTAGCTAAACACAAAGTTATTATGATTTCATGTTTATTAAGGTCCGCCTACTTTTCTAAATTTTTATAAAGCTTCTGATATTTTGAATTCCAGGAAGCCATCATGTCCCGCCATTCTTCCCTCGAGCCCATCTACAGTACCCTTCAACGTTGCTTCATTGGAATTGGACTAATATCCAACTTGATTCTGATAAACCTTATCATTTTCCGATCTCCCAAAGATTTAGGACTCTATAAGTACCTAATGGCTTATATCATCTGTTTCGAACTATTCTACATTGTTTTGGAGTTTCTAACAGTTCCCGATTTGTTAACTCTGGACTATGCTTTCTTTATAATTGTTGATCCCGAGAAATCGTTGTTGCCAGAAAAATGGTCACAAGTGGCAGATTGTGAGTTTAGTTTTGGCTCAAAAGAGGGCAGTTCTTCGGAGTTCCGGTACGTATTTTGACATGATAGTGTGCAATGATCAATTTTCATACAGCGCGCGGCAATCGGCCTCAGCGTGGAAGAATTTTGGTTTTTTCAACCTAGGTTACTGTAGTTTGGGTTACTTCAGCTTCACTGTAGCTCTGTTAAAGCCATTCTACAGTATCCCTGGATCTTTTTTGAACATTTCGAGTTCTATTGAATAAATGTAGTTTGGGTTAGTGTATACCGTCACAAATCTAAATCTAGTTTTTTTCTGGTTTCCTGTGAAGTTCGGATTCTCCAAACCCACAGTAATCCGAACTTTAACAAGTTATCGCATCCCTGAATTCATATAGACTTGAGTAATTCCGTTTTTTTAAAGCTATAGGTACTGTACGATTTCTGTACTTTTTCAGCTTCCGAATTTAATGTCTTCATGAATTACTGTAGTTGTTTTTCCAAAACTTCCCCACTGCCAGGATAACTGTAGTTTCGGTTACTGTAGATCCTAACCTAGGAAAGCTTTTAGGCCACTGTAAGAT</canonical>
            <polymorphic>CTCACGGGTTGTGATTTTTGGTGCCAAATTATTTTTTTGTAGTTCCGTGTAGCTAAACACAAAGTTATTATGATTTCATGTTTATTAAGGTCCGCCTACTTTTCTAAATTTTTATAAAGCTTCTGATATTTTGAATTCCAGGAAGCCATCATGTCCCGCCATTCTTCCCTCGAGCCCATCTACAGTACCCTTCAACGTTGCTTCATTGGAATTGGACTAATATCCAACTTGATTCTGATAAACCTTATCATTTTCCGATCTCCCAAAGATTTAGGACTCTATAAGTACCTAATGGCTTATATCATCTGTTTCGAACTATTCTACATTGTTTTGGAGTTTCTAACAGTTCCCGATTTGTTAACTCTGGACTATGCTTTCTTTATAATTGTTGATCCCGAGAAATCGTTGTTGCCAGAAAAATGGTCACAAGTGGCAGATTGTGAGTTTAGTTTTGGCTCAAAAGAGGGCAGTTCTTCGGAGTTCCGGTACGTATTTTGACRTGATAGTGTGCAATGATCAATTTTCATACAGCGCGCGGCAATCGGCCTCAGCGTGGAAGAATTTTGGTTTTTTCAACCTAGGTTACTGTAGTTTGGGTTACTTCAGCTTCACTGTAGCTCTGTTAAAGCCATTCTACAGTATCCCTGGATCTTTTTTGAACATTTCGAGTTCTATTGAATAAATGTAGTTTGGGTTAGTGTATACCGTCACAAATCTAAATCTAGTTTTTTTCTGGTTTCCTGTGAAGTTCGGATTCTCCAAACCCACAGTAATCCGAACTTTAACAAGTTATCGCATCCCTGAATTCATATAGACTTGAGTAATTCCGTTTTTTTAAAGCTATAGGTACTGTACGATTTCTGTACTTTTTCAGCTTCCGAATTTAATGTCTTCATGAATTACTGTAGTTGTTTTTCCAAAACTTCCCCACTGCCAGGATAACTGTAGTTTCGGTTACTGTAGATCCTAACCTAGGAAAGCTTTTAGGCCACTGTAAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>395 349 106 77 73</canonical_bands>
                <polymorphic_bands>744 106 77 73</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTGGCAGATTGTGAGTTTAGT</pcr_primer_p1>
		<pcr_primer_p2>ATAGAACTCGAAATGTTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGTGGCAGATTGTGAGTTTAGTTTTGGCTCAAAAGAGGGCAGTTCTTCGGAGTTCCGGTACGTATTTTGACATGATAGTGTGCAATGATCAATTTTCATACAGCGCGCGGCAATCGGCCTCAGCGTGGAAGAATTTTGGTTTTTTCAACCTAGGTTACTGTAGTTTGGGTTACTTCAGCTTCACTGTAGCTCTGTTAAAGCCATTCTACAGTATCCCTGGATCTTTTTTGAACATTTCGAGTTCTAT</canonical_amplicon>
		<polymorphic_amplicon>AGTGGCAGATTGTGAGTTTAGTTTTGGCTCAAAAGAGGGCAGTTCTTCGGAGTTCCGGTACGTATTTTGACRTGATAGTGTGCAATGATCAATTTTCATACAGCGCGCGGCAATCGGCCTCAGCGTGGAAGAATTTTGGTTTTTTCAACCTAGGTTACTGTAGTTTGGGTTACTTCAGCTTCACTGTAGCTCTGTTAAAGCCATTCTACAGTATCCCTGGATCTTTTTTGAACATTTCGAGTTCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11361</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>6074</contig_pos>
        <strand>+</strand>
        <context>CTCAAAAGAG[A/G]GCAGTTCTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAATGGTCACAAGTGGCAGATTGTGAGTTTAGTTTTGGCTCAAAAGAG</left_flank>
        <right_flank>GCAGTTCTTCGGAGTTCCGGTACGTATTTTGACATGATAGTGTGCAATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACACTCACGCACATTTTCTCAAGAGTGAAAAATCTCACGGGTTGTGATTTTTGGTGCCAAATTATTTTTTTGTAGTTCCGTGTAGCTAAACACAAAGTTATTATGATTTCATGTTTATTAAGGTCCGCCTACTTTTCTAAATTTTTATAAAGCTTCTGATATTTTGAATTCCAGGAAGCCATCATGTCCCGCCATTCTTCCCTCGAGCCCATCTACAGTACCCTTCAACGTTGCTTCATTGGAATTGGACTAATATCCAACTTGATTCTGATAAACCTTATCATTTTCCGATCTCCCAAAGATTTAGGACTCTATAAGTACCTAATGGCTTATATCATCTGTTTCGAACTATTCTACATTGTTTTGGAGTTTCTAACAGTTCCCGATTTGTTAACTCTGGACTATGCTTTCTTTATAATTGTTGATCCCGAGAAATCGTTGTTGCCAGAAAAATGGTCACAAGTGGCAGATTGTGAGTTTAGTTTTGGCTCAAAAGAGGGCAGTTCTTCGGAGTTCCGGTACGTATTTTGACATGATAGTGTGCAATGATCAATTTTCATACAGCGCGCGGCAATCGGCCTCAGCGTGGAAGAATTTTGGTTTTTTCAACCTAGGTTACTGTAGTTTGGGTTACTTCAGCTTCACTGTAGCTCTGTTAAAGCCATTCTACAGTATCCCTGGATCTTTTTTGAACATTTCGAGTTCTATTGAATAAATGTAGTTTGGGTTAGTGTATACCGTCACAAATCTAAATCTAGTTTTTTTCTGGTTTCCTGTGAAGTTCGGATTCTCCAAACCCACAGTAATCCGAACTTTAACAAGTTATCGCATCCCTGAATTCATATAGACTTGAGTAATTCCGTTTTTTTAAAGCTATAGGTACTGTACGATTTCTGTACTTTTTCAGCTTCCGAATTTAATGTCTTCATGAATTACTGTAGTTGTTTTTCCAAAACTTCCCCACTGCCAGGATAACTGTAGTTTCGGTTACTGTAGATC</canonical>
            <polymorphic>GACACTCACGCACATTTTCTCAAGAGTGAAAAATCTCACGGGTTGTGATTTTTGGTGCCAAATTATTTTTTTGTAGTTCCGTGTAGCTAAACACAAAGTTATTATGATTTCATGTTTATTAAGGTCCGCCTACTTTTCTAAATTTTTATAAAGCTTCTGATATTTTGAATTCCAGGAAGCCATCATGTCCCGCCATTCTTCCCTCGAGCCCATCTACAGTACCCTTCAACGTTGCTTCATTGGAATTGGACTAATATCCAACTTGATTCTGATAAACCTTATCATTTTCCGATCTCCCAAAGATTTAGGACTCTATAAGTACCTAATGGCTTATATCATCTGTTTCGAACTATTCTACATTGTTTTGGAGTTTCTAACAGTTCCCGATTTGTTAACTCTGGACTATGCTTTCTTTATAATTGTTGATCCCGAGAAATCGTTGTTGCCAGAAAAATGGTCACAAGTGGCAGATTGTGAGTTTAGTTTTGGCTCAAAAGAGRGCAGTTCTTCGGAGTTCCGGTACGTATTTTGACATGATAGTGTGCAATGATCAATTTTCATACAGCGCGCGGCAATCGGCCTCAGCGTGGAAGAATTTTGGTTTTTTCAACCTAGGTTACTGTAGTTTGGGTTACTTCAGCTTCACTGTAGCTCTGTTAAAGCCATTCTACAGTATCCCTGGATCTTTTTTGAACATTTCGAGTTCTATTGAATAAATGTAGTTTGGGTTAGTGTATACCGTCACAAATCTAAATCTAGTTTTTTTCTGGTTTCCTGTGAAGTTCGGATTCTCCAAACCCACAGTAATCCGAACTTTAACAAGTTATCGCATCCCTGAATTCATATAGACTTGAGTAATTCCGTTTTTTTAAAGCTATAGGTACTGTACGATTTCTGTACTTTTTCAGCTTCCGAATTTAATGTCTTCATGAATTACTGTAGTTGTTTTTCCAAAACTTCCCCACTGCCAGGATAACTGTAGTTTCGGTTACTGTAGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTACCTAATGGCTTATATCATCTG</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTGATCATTGCACACTAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AGTACCTAATGGCTTATATCATCTGTTTCGAACTATTCTACATTGTTTTGGAGTTTCTAACAGTTCCCGATTTGTTAACTCTGGACTATGCTTTCTTTATAATTGTTGATCCCGAGAAATCGTTGTTGCCAGAAAAATGGTCACAAGTGGCAGATTGTGAGTTTAGTTTTGGCTCAAAAGAGGGCAGTTCTTCGGAGTTCCGGTACGTATTTTGACATGATAGTGTGCAATGATCAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>AGTACCTAATGGCTTATATCATCTGTTTCGAACTATTCTACATTGTTTTGGAGTTTCTAACAGTTCCCGATTTGTTAACTCTGGACTATGCTTTCTTTATAATTGTTGATCCCGAGAAATCGTTGTTGCCAGAAAAATGGTCACAAGTGGCAGATTGTGAGTTTAGTTTTGGCTCAAAAGAGRGCAGTTCTTCGGAGTTCCGGTACGTATTTTGACATGATAGTGTGCAATGATCAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11362</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>5981</contig_pos>
        <strand>+</strand>
        <context>TCTGGACTAT[G/T]CTTTCTTTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACATTGTTTTGGAGTTTCTAACAGTTCCCGATTTGTTAACTCTGGACTAT</left_flank>
        <right_flank>CTTTCTTTATAATTGTTGATCCCGAGAAATCGTTGTTGCCAGAAAAATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATGAGCCTTTAAAATCAAAAATCCTTTTGATCAAACGAAAAAAGGTCTACGTTTTTGTATCTGGTCTTTTCATAGTTGAATGAACTCATTAGACACTCACGCACATTTTCTCAAGAGTGAAAAATCTCACGGGTTGTGATTTTTGGTGCCAAATTATTTTTTTGTAGTTCCGTGTAGCTAAACACAAAGTTATTATGATTTCATGTTTATTAAGGTCCGCCTACTTTTCTAAATTTTTATAAAGCTTCTGATATTTTGAATTCCAGGAAGCCATCATGTCCCGCCATTCTTCCCTCGAGCCCATCTACAGTACCCTTCAACGTTGCTTCATTGGAATTGGACTAATATCCAACTTGATTCTGATAAACCTTATCATTTTCCGATCTCCCAAAGATTTAGGACTCTATAAGTACCTAATGGCTTATATCATCTGTTTCGAACTATTCTACATTGTTTTGGAGTTTCTAACAGTTCCCGATTTGTTAACTCTGGACTATGCTTTCTTTATAATTGTTGATCCCGAGAAATCGTTGTTGCCAGAAAAATGGTCACAAGTGGCAGATTGTGAGTTTAGTTTTGGCTCAAAAGAGGGCAGTTCTTCGGAGTTCCGGTACGTATTTTGACATGATAGTGTGCAATGATCAATTTTCATACAGCGCGCGGCAATCGGCCTCAGCGTGGAAGAATTTTGGTTTTTTCAACCTAGGTTACTGTAGTTTGGGTTACTTCAGCTTCACTGTAGCTCTGTTAAAGCCATTCTACAGTATCCCTGGATCTTTTTTGAACATTTCGAGTTCTATTGAATAAATGTAGTTTGGGTTAGTGTATACCGTCACAAATCTAAATCTAGTTTTTTTCTGGTTTCCTGTGAAGTTCGGATTCTCCAAACCCACAGTAATCCGAACTTTAACAAGTTATCGCATCCCTGAATTCATATAGACTTGAGTAATTCCGTTTTTTTAAAGCTATAGGTACTGTACGATTTCTGTACTTTTTCA</canonical>
            <polymorphic>CTATGAGCCTTTAAAATCAAAAATCCTTTTGATCAAACGAAAAAAGGTCTACGTTTTTGTATCTGGTCTTTTCATAGTTGAATGAACTCATTAGACACTCACGCACATTTTCTCAAGAGTGAAAAATCTCACGGGTTGTGATTTTTGGTGCCAAATTATTTTTTTGTAGTTCCGTGTAGCTAAACACAAAGTTATTATGATTTCATGTTTATTAAGGTCCGCCTACTTTTCTAAATTTTTATAAAGCTTCTGATATTTTGAATTCCAGGAAGCCATCATGTCCCGCCATTCTTCCCTCGAGCCCATCTACAGTACCCTTCAACGTTGCTTCATTGGAATTGGACTAATATCCAACTTGATTCTGATAAACCTTATCATTTTCCGATCTCCCAAAGATTTAGGACTCTATAAGTACCTAATGGCTTATATCATCTGTTTCGAACTATTCTACATTGTTTTGGAGTTTCTAACAGTTCCCGATTTGTTAACTCTGGACTATKCTTTCTTTATAATTGTTGATCCCGAGAAATCGTTGTTGCCAGAAAAATGGTCACAAGTGGCAGATTGTGAGTTTAGTTTTGGCTCAAAAGAGGGCAGTTCTTCGGAGTTCCGGTACGTATTTTGACATGATAGTGTGCAATGATCAATTTTCATACAGCGCGCGGCAATCGGCCTCAGCGTGGAAGAATTTTGGTTTTTTCAACCTAGGTTACTGTAGTTTGGGTTACTTCAGCTTCACTGTAGCTCTGTTAAAGCCATTCTACAGTATCCCTGGATCTTTTTTGAACATTTCGAGTTCTATTGAATAAATGTAGTTTGGGTTAGTGTATACCGTCACAAATCTAAATCTAGTTTTTTTCTGGTTTCCTGTGAAGTTCGGATTCTCCAAACCCACAGTAATCCGAACTTTAACAAGTTATCGCATCCCTGAATTCATATAGACTTGAGTAATTCCGTTTTTTTAAAGCTATAGGTACTGTACGATTTCTGTACTTTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGACTAATATCCAACTTGATTC</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGAGCCAAAACTAAACTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGGACTAATATCCAACTTGATTCTGATAAACCTTATCATTTTCCGATCTCCCAAAGATTTAGGACTCTATAAGTACCTAATGGCTTATATCATCTGTTTCGAACTATTCTACATTGTTTTGGAGTTTCTAACAGTTCCCGATTTGTTAACTCTGGACTATGCTTTCTTTATAATTGTTGATCCCGAGAAATCGTTGTTGCCAGAAAAATGGTCACAAGTGGCAGATTGTGAGTTTAGTTTTGGCTCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>TGGACTAATATCCAACTTGATTCTGATAAACCTTATCATTTTCCGATCTCCCAAAGATTTAGGACTCTATAAGTACCTAATGGCTTATATCATCTGTTTCGAACTATTCTACATTGTTTTGGAGTTTCTAACAGTTCCCGATTTGTTAACTCTGGACTATKCTTTCTTTATAATTGTTGATCCCGAGAAATCGTTGTTGCCAGAAAAATGGTCACAAGTGGCAGATTGTGAGTTTAGTTTTGGCTCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11363</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>5920</contig_pos>
        <strand>+</strand>
        <context>TCATCTGTTT[C/T]GAACTATTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCAAAGATTTAGGACTCTATAAGTACCTAATGGCTTATATCATCTGTTT</left_flank>
        <right_flank>GAACTATTCTACATTGTTTTGGAGTTTCTAACAGTTCCCGATTTGTTAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAATTTTAAAATATCATAAATCAGCTATGTTATTGTTTTGAAAAATATATTCCCTTTATCTATGAGCCTTTAAAATCAAAAATCCTTTTGATCAAACGAAAAAAGGTCTACGTTTTTGTATCTGGTCTTTTCATAGTTGAATGAACTCATTAGACACTCACGCACATTTTCTCAAGAGTGAAAAATCTCACGGGTTGTGATTTTTGGTGCCAAATTATTTTTTTGTAGTTCCGTGTAGCTAAACACAAAGTTATTATGATTTCATGTTTATTAAGGTCCGCCTACTTTTCTAAATTTTTATAAAGCTTCTGATATTTTGAATTCCAGGAAGCCATCATGTCCCGCCATTCTTCCCTCGAGCCCATCTACAGTACCCTTCAACGTTGCTTCATTGGAATTGGACTAATATCCAACTTGATTCTGATAAACCTTATCATTTTCCGATCTCCCAAAGATTTAGGACTCTATAAGTACCTAATGGCTTATATCATCTGTTTCGAACTATTCTACATTGTTTTGGAGTTTCTAACAGTTCCCGATTTGTTAACTCTGGACTATGCTTTCTTTATAATTGTTGATCCCGAGAAATCGTTGTTGCCAGAAAAATGGTCACAAGTGGCAGATTGTGAGTTTAGTTTTGGCTCAAAAGAGGGCAGTTCTTCGGAGTTCCGGTACGTATTTTGACATGATAGTGTGCAATGATCAATTTTCATACAGCGCGCGGCAATCGGCCTCAGCGTGGAAGAATTTTGGTTTTTTCAACCTAGGTTACTGTAGTTTGGGTTACTTCAGCTTCACTGTAGCTCTGTTAAAGCCATTCTACAGTATCCCTGGATCTTTTTTGAACATTTCGAGTTCTATTGAATAAATGTAGTTTGGGTTAGTGTATACCGTCACAAATCTAAATCTAGTTTTTTTCTGGTTTCCTGTGAAGTTCGGATTCTCCAAACCCACAGTAATCCGAACTTTAACAAGTTATCGCATCCCTGAATTCATAT</canonical>
            <polymorphic>TTTAATTTTAAAATATCATAAATCAGCTATGTTATTGTTTTGAAAAATATATTCCCTTTATCTATGAGCCTTTAAAATCAAAAATCCTTTTGATCAAACGAAAAAAGGTCTACGTTTTTGTATCTGGTCTTTTCATAGTTGAATGAACTCATTAGACACTCACGCACATTTTCTCAAGAGTGAAAAATCTCACGGGTTGTGATTTTTGGTGCCAAATTATTTTTTTGTAGTTCCGTGTAGCTAAACACAAAGTTATTATGATTTCATGTTTATTAAGGTCCGCCTACTTTTCTAAATTTTTATAAAGCTTCTGATATTTTGAATTCCAGGAAGCCATCATGTCCCGCCATTCTTCCCTCGAGCCCATCTACAGTACCCTTCAACGTTGCTTCATTGGAATTGGACTAATATCCAACTTGATTCTGATAAACCTTATCATTTTCCGATCTCCCAAAGATTTAGGACTCTATAAGTACCTAATGGCTTATATCATCTGTTTYGAACTATTCTACATTGTTTTGGAGTTTCTAACAGTTCCCGATTTGTTAACTCTGGACTATGCTTTCTTTATAATTGTTGATCCCGAGAAATCGTTGTTGCCAGAAAAATGGTCACAAGTGGCAGATTGTGAGTTTAGTTTTGGCTCAAAAGAGGGCAGTTCTTCGGAGTTCCGGTACGTATTTTGACATGATAGTGTGCAATGATCAATTTTCATACAGCGCGCGGCAATCGGCCTCAGCGTGGAAGAATTTTGGTTTTTTCAACCTAGGTTACTGTAGTTTGGGTTACTTCAGCTTCACTGTAGCTCTGTTAAAGCCATTCTACAGTATCCCTGGATCTTTTTTGAACATTTCGAGTTCTATTGAATAAATGTAGTTTGGGTTAGTGTATACCGTCACAAATCTAAATCTAGTTTTTTTCTGGTTTCCTGTGAAGTTCGGATTCTCCAAACCCACAGTAATCCGAACTTTAACAAGTTATCGCATCCCTGAATTCATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>359 354 146 141</canonical_bands>
                <polymorphic_bands>495 359 146</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGACTAATATCCAACTTGATTC</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGAGCCAAAACTAAACTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGGACTAATATCCAACTTGATTCTGATAAACCTTATCATTTTCCGATCTCCCAAAGATTTAGGACTCTATAAGTACCTAATGGCTTATATCATCTGTTTCGAACTATTCTACATTGTTTTGGAGTTTCTAACAGTTCCCGATTTGTTAACTCTGGACTATGCTTTCTTTATAATTGTTGATCCCGAGAAATCGTTGTTGCCAGAAAAATGGTCACAAGTGGCAGATTGTGAGTTTAGTTTTGGCTCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>TGGACTAATATCCAACTTGATTCTGATAAACCTTATCATTTTCCGATCTCCCAAAGATTTAGGACTCTATAAGTACCTAATGGCTTATATCATCTGTTTYGAACTATTCTACATTGTTTTGGAGTTTCTAACAGTTCCCGATTTGTTAACTCTGGACTATGCTTTCTTTATAATTGTTGATCCCGAGAAATCGTTGTTGCCAGAAAAATGGTCACAAGTGGCAGATTGTGAGTTTAGTTTTGGCTCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11364</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>5797</contig_pos>
        <strand>+</strand>
        <context>TCTACAGTAC[C/T]CTTCAACGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGGAAGCCATCATGTCCCGCCATTCTTCCCTCGAGCCCATCTACAGTAC</left_flank>
        <right_flank>CTTCAACGTTGCTTCATTGGAATTGGACTAATATCCAACTTGATTCTGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAGCAACCGAGATAATAGAGCTTAAAGTGCGGTACCGTATTTTTGATAACTTTTTTCTGTTTCAATAAAGTCATGGATGCATATTCAATTGAACAATGAACTTGTTGTTTTGGTATTTTTTTTTAATTTTAAAATATCATAAATCAGCTATGTTATTGTTTTGAAAAATATATTCCCTTTATCTATGAGCCTTTAAAATCAAAAATCCTTTTGATCAAACGAAAAAAGGTCTACGTTTTTGTATCTGGTCTTTTCATAGTTGAATGAACTCATTAGACACTCACGCACATTTTCTCAAGAGTGAAAAATCTCACGGGTTGTGATTTTTGGTGCCAAATTATTTTTTTGTAGTTCCGTGTAGCTAAACACAAAGTTATTATGATTTCATGTTTATTAAGGTCCGCCTACTTTTCTAAATTTTTATAAAGCTTCTGATATTTTGAATTCCAGGAAGCCATCATGTCCCGCCATTCTTCCCTCGAGCCCATCTACAGTACCCTTCAACGTTGCTTCATTGGAATTGGACTAATATCCAACTTGATTCTGATAAACCTTATCATTTTCCGATCTCCCAAAGATTTAGGACTCTATAAGTACCTAATGGCTTATATCATCTGTTTCGAACTATTCTACATTGTTTTGGAGTTTCTAACAGTTCCCGATTTGTTAACTCTGGACTATGCTTTCTTTATAATTGTTGATCCCGAGAAATCGTTGTTGCCAGAAAAATGGTCACAAGTGGCAGATTGTGAGTTTAGTTTTGGCTCAAAAGAGGGCAGTTCTTCGGAGTTCCGGTACGTATTTTGACATGATAGTGTGCAATGATCAATTTTCATACAGCGCGCGGCAATCGGCCTCAGCGTGGAAGAATTTTGGTTTTTTCAACCTAGGTTACTGTAGTTTGGGTTACTTCAGCTTCACTGTAGCTCTGTTAAAGCCATTCTACAGTATCCCTGGATCTTTTTTGAACATTTCGAGTTCTATTGAATAAATGTAGT</canonical>
            <polymorphic>TAAAGCAACCGAGATAATAGAGCTTAAAGTGCGGTACCGTATTTTTGATAACTTTTTTCTGTTTCAATAAAGTCATGGATGCATATTCAATTGAACAATGAACTTGTTGTTTTGGTATTTTTTTTTAATTTTAAAATATCATAAATCAGCTATGTTATTGTTTTGAAAAATATATTCCCTTTATCTATGAGCCTTTAAAATCAAAAATCCTTTTGATCAAACGAAAAAAGGTCTACGTTTTTGTATCTGGTCTTTTCATAGTTGAATGAACTCATTAGACACTCACGCACATTTTCTCAAGAGTGAAAAATCTCACGGGTTGTGATTTTTGGTGCCAAATTATTTTTTTGTAGTTCCGTGTAGCTAAACACAAAGTTATTATGATTTCATGTTTATTAAGGTCCGCCTACTTTTCTAAATTTTTATAAAGCTTCTGATATTTTGAATTCCAGGAAGCCATCATGTCCCGCCATTCTTCCCTCGAGCCCATCTACAGTACYCTTCAACGTTGCTTCATTGGAATTGGACTAATATCCAACTTGATTCTGATAAACCTTATCATTTTCCGATCTCCCAAAGATTTAGGACTCTATAAGTACCTAATGGCTTATATCATCTGTTTCGAACTATTCTACATTGTTTTGGAGTTTCTAACAGTTCCCGATTTGTTAACTCTGGACTATGCTTTCTTTATAATTGTTGATCCCGAGAAATCGTTGTTGCCAGAAAAATGGTCACAAGTGGCAGATTGTGAGTTTAGTTTTGGCTCAAAAGAGGGCAGTTCTTCGGAGTTCCGGTACGTATTTTGACATGATAGTGTGCAATGATCAATTTTCATACAGCGCGCGGCAATCGGCCTCAGCGTGGAAGAATTTTGGTTTTTTCAACCTAGGTTACTGTAGTTTGGGTTACTTCAGCTTCACTGTAGCTCTGTTAAAGCCATTCTACAGTATCCCTGGATCTTTTTTGAACATTTCGAGTTCTATTGAATAAATGTAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGTCCGCCTACTTTTCTAA</pcr_primer_p1>
		<pcr_primer_p2>GAAACTCCAAAACAATGTAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AGGTCCGCCTACTTTTCTAAATTTTTATAAAGCTTCTGATATTTTGAATTCCAGGAAGCCATCATGTCCCGCCATTCTTCCCTCGAGCCCATCTACAGTACCCTTCAACGTTGCTTCATTGGAATTGGACTAATATCCAACTTGATTCTGATAAACCTTATCATTTTCCGATCTCCCAAAGATTTAGGACTCTATAAGTACCTAATGGCTTATATCATCTGTTTCGAACTATTCTACATTGTTTTGGAGTTTC</canonical_amplicon>
		<polymorphic_amplicon>AGGTCCGCCTACTTTTCTAAATTTTTATAAAGCTTCTGATATTTTGAATTCCAGGAAGCCATCATGTCCCGCCATTCTTCCCTCGAGCCCATCTACAGTACYCTTCAACGTTGCTTCATTGGAATTGGACTAATATCCAACTTGATTCTGATAAACCTTATCATTTTCCGATCTCCCAAAGATTTAGGACTCTATAAGTACCTAATGGCTTATATCATCTGTTTCGAACTATTCTACATTGTTTTGGAGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11365</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>5672</contig_pos>
        <strand>+</strand>
        <context>TAAACACAAA[G/T]TTATTATGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTTTGGTGCCAAATTATTTTTTTGTAGTTCCGTGTAGCTAAACACAAA</left_flank>
        <right_flank>TTATTATGATTTCATGTTTATTAAGGTCCGCCTACTTTTCTAAATTTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTACGTGCACTTTAAGCTCACTTATCTCTGTTCCTATGAGAGGTATCAAAAAATTGTAAAATACAAAAATATTGGTGATTTTATGATATATACTTCATTAGTTGACAACTTTTCGATACGTTTTAAAGCAACCGAGATAATAGAGCTTAAAGTGCGGTACCGTATTTTTGATAACTTTTTTCTGTTTCAATAAAGTCATGGATGCATATTCAATTGAACAATGAACTTGTTGTTTTGGTATTTTTTTTTAATTTTAAAATATCATAAATCAGCTATGTTATTGTTTTGAAAAATATATTCCCTTTATCTATGAGCCTTTAAAATCAAAAATCCTTTTGATCAAACGAAAAAAGGTCTACGTTTTTGTATCTGGTCTTTTCATAGTTGAATGAACTCATTAGACACTCACGCACATTTTCTCAAGAGTGAAAAATCTCACGGGTTGTGATTTTTGGTGCCAAATTATTTTTTTGTAGTTCCGTGTAGCTAAACACAAAGTTATTATGATTTCATGTTTATTAAGGTCCGCCTACTTTTCTAAATTTTTATAAAGCTTCTGATATTTTGAATTCCAGGAAGCCATCATGTCCCGCCATTCTTCCCTCGAGCCCATCTACAGTACCCTTCAACGTTGCTTCATTGGAATTGGACTAATATCCAACTTGATTCTGATAAACCTTATCATTTTCCGATCTCCCAAAGATTTAGGACTCTATAAGTACCTAATGGCTTATATCATCTGTTTCGAACTATTCTACATTGTTTTGGAGTTTCTAACAGTTCCCGATTTGTTAACTCTGGACTATGCTTTCTTTATAATTGTTGATCCCGAGAAATCGTTGTTGCCAGAAAAATGGTCACAAGTGGCAGATTGTGAGTTTAGTTTTGGCTCAAAAGAGGGCAGTTCTTCGGAGTTCCGGTACGTATTTTGACATGATAGTGTGCAATGATCAATTTTCATACAGCGCGCGGCAATCGGCCTCAGCGTGGAAGAATTT</canonical>
            <polymorphic>TTGTACGTGCACTTTAAGCTCACTTATCTCTGTTCCTATGAGAGGTATCAAAAAATTGTAAAATACAAAAATATTGGTGATTTTATGATATATACTTCATTAGTTGACAACTTTTCGATACGTTTTAAAGCAACCGAGATAATAGAGCTTAAAGTGCGGTACCGTATTTTTGATAACTTTTTTCTGTTTCAATAAAGTCATGGATGCATATTCAATTGAACAATGAACTTGTTGTTTTGGTATTTTTTTTTAATTTTAAAATATCATAAATCAGCTATGTTATTGTTTTGAAAAATATATTCCCTTTATCTATGAGCCTTTAAAATCAAAAATCCTTTTGATCAAACGAAAAAAGGTCTACGTTTTTGTATCTGGTCTTTTCATAGTTGAATGAACTCATTAGACACTCACGCACATTTTCTCAAGAGTGAAAAATCTCACGGGTTGTGATTTTTGGTGCCAAATTATTTTTTTGTAGTTCCGTGTAGCTAAACACAAAKTTATTATGATTTCATGTTTATTAAGGTCCGCCTACTTTTCTAAATTTTTATAAAGCTTCTGATATTTTGAATTCCAGGAAGCCATCATGTCCCGCCATTCTTCCCTCGAGCCCATCTACAGTACCCTTCAACGTTGCTTCATTGGAATTGGACTAATATCCAACTTGATTCTGATAAACCTTATCATTTTCCGATCTCCCAAAGATTTAGGACTCTATAAGTACCTAATGGCTTATATCATCTGTTTCGAACTATTCTACATTGTTTTGGAGTTTCTAACAGTTCCCGATTTGTTAACTCTGGACTATGCTTTCTTTATAATTGTTGATCCCGAGAAATCGTTGTTGCCAGAAAAATGGTCACAAGTGGCAGATTGTGAGTTTAGTTTTGGCTCAAAAGAGGGCAGTTCTTCGGAGTTCCGGTACGTATTTTGACATGATAGTGTGCAATGATCAATTTTCATACAGCGCGCGGCAATCGGCCTCAGCGTGGAAGAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTCAAGAGTGAAAAATCTC</pcr_primer_p1>
		<pcr_primer_p2>GATATTAGTCCAATTCCAATGAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTCAAGAGTGAAAAATCTCACGGGTTGTGATTTTTGGTGCCAAATTATTTTTTTGTAGTTCCGTGTAGCTAAACACAAAGTTATTATGATTTCATGTTTATTAAGGTCCGCCTACTTTTCTAAATTTTTATAAAGCTTCTGATATTTTGAATTCCAGGAAGCCATCATGTCCCGCCATTCTTCCCTCGAGCCCATCTACAGTACCCTTCAACGTTGCTTCATTGGAATTGGACTAATATC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTCAAGAGTGAAAAATCTCACGGGTTGTGATTTTTGGTGCCAAATTATTTTTTTGTAGTTCCGTGTAGCTAAACACAAAKTTATTATGATTTCATGTTTATTAAGGTCCGCCTACTTTTCTAAATTTTTATAAAGCTTCTGATATTTTGAATTCCAGGAAGCCATCATGTCCCGCCATTCTTCCCTCGAGCCCATCTACAGTACCCTTCAACGTTGCTTCATTGGAATTGGACTAATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11366</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>101680</contig_pos>
        <strand>+</strand>
        <context>TCGATGTAGT[C/T]AAATTGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACAATCCCAAACACTCACTTCTCCTCAGACATTGTTCCTCGATGTAGT</left_flank>
        <right_flank>AAATTGAAAAAAGAGAAAATATGCGTAGATTCGAAAATTGAAATCGTGGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTCTTCTTCAAATCTGCCGCAAAAACGTGTATTTCGTTGGTTGGATCCCATTTTTTCAACGAATCCATCGCTAATTCATCAGCGGAATAAATACATAATTTTCCGTCGTTCGTGAATGTATGGACCACGTAGTTTGTACCATCCGGCTTATCCAAGGATAGCATATATCTTCTGAAAATCAGAATACCGTAAACAACTCTAATAGAACGCCACCAGGCTCGTCAAATTTGAACCAATGTATCTCAATTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACAAAATATGTATCATAATATCAGTAACGTTTTATCAGTTAACCACTTTTTGATGTCTTTCATAAGAACCGAAATATATGGGCTCAAAGATGACAGTTTGGGTGGCGTTGTATTAGAAATAAAGTTTGCAGTAGTTTTGGATTTTCCGAATTCGAACAAAAAATAGACAAACAATCCCAAACACTCACTTCTCCTCAGACATTGTTCCTCGATGTAGTTAAATTGAAAAAAGAGAAAATATGCGTAGATTCGAAAATTGAAATCGTGGAAAAAATTTCGGAGATTAGCAAAGTTTTTGGATTTTTATATAATATTTTTCACGTGATACCCTAGTTTCTAGTATGCTAAAAAGCATGGCTATTCAAAATGACGGCAGGCAGGCTCCATTTTTTTACTCAATTTTATTTTTTTTTTCGCGTTGCATTTTCCTATTTTAAAAGTTTGGGTGACCTGGTTTATTTTTTTACGGACCCTTAAATAAATATTTTCATTTTATACCGTAAAACCTGTATTAGAAGAGCCCCCTTTAATAGAAGGGCCCCTTTAATAGAAGTGTTAACCCAGGGGGACTTGGAAAAATAGAAGGACCCCCTGTAATAGAAGGGCCCTTTGTGATAAAGGACTACCCTTTAAAATGTATTTTGAAATCAGGAAATTTCCATACTTTTCCGGTGAAAAATATTCCAGGAACTCCACAATTTATTAGAAATTTGTTGAAA</canonical>
            <polymorphic>TCTTCTTCTTCAAATCTGCCGCAAAAACGTGTATTTCGTTGGTTGGATCCCATTTTTTCAACGAATCCATCGCTAATTCATCAGCGGAATAAATACATAATTTTCCGTCGTTCGTGAATGTATGGACCACGTAGTTTGTACCATCCGGCTTATCCAAGGATAGCATATATCTTCTGAAAATCAGAATACCGTAAACAACTCTAATAGAACGCCACCAGGCTCGTCAAATTTGAACCAATGTATCTCAATTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACAAAATATGTATCATAATATCAGTAACGTTTTATCAGTTAACCACTTTTTGATGTCTTTCATAAGAACCGAAATATATGGGCTCAAAGATGACAGTTTGGGTGGCGTTGTATTAGAAATAAAGTTTGCAGTAGTTTTGGATTTTCCGAATTCGAACAAAAAATAGACAAACAATCCCAAACACTCACTTCTCCTCAGACATTGTTCCTCGATGTAGTYAAATTGAAAAAAGAGAAAATATGCGTAGATTCGAAAATTGAAATCGTGGAAAAAATTTCGGAGATTAGCAAAGTTTTTGGATTTTTATATAATATTTTTCACGTGATACCCTAGTTTCTAGTATGCTAAAAAGCATGGCTATTCAAAATGACGGCAGGCAGGCTCCATTTTTTTACTCAATTTTATTTTTTTTTTCGCGTTGCATTTTCCTATTTTAAAAGTTTGGGTGACCTGGTTTATTTTTTTACGGACCCTTAAATAAATATTTTCATTTTATACCGTAAAACCTGTATTAGAAGAGCCCCCTTTAATAGAAGGGCCCCTTTAATAGAAGTGTTAACCCAGGGGGACTTGGAAAAATAGAAGGACCCCCTGTAATAGAAGGGCCCTTTGTGATAAAGGACTACCCTTTAAAATGTATTTTGAAATCAGGAAATTTCCATACTTTTCCGGTGAAAAATATTCCAGGAACTCCACAATTTATTAGAAATTTGTTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>320 216 179 89 74 53 40 17 12</canonical_bands>
                <polymorphic_bands>395 320 89 74 53 40 17 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATAAAGTTTGCAGTAGTTTTG</pcr_primer_p1>
		<pcr_primer_p2>ATAGCCATGCTTTTTAGCATAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAATAAAGTTTGCAGTAGTTTTGGATTTTCCGAATTCGAACAAAAAATAGACAAACAATCCCAAACACTCACTTCTCCTCAGACATTGTTCCTCGATGTAGTTAAATTGAAAAAAGAGAAAATATGCGTAGATTCGAAAATTGAAATCGTGGAAAAAATTTCGGAGATTAGCAAAGTTTTTGGATTTTTATATAATATTTTTCACGTGATACCCTAGTTTCTAGTATGCTAAAAAGCATGGCTAT</canonical_amplicon>
		<polymorphic_amplicon>GAAATAAAGTTTGCAGTAGTTTTGGATTTTCCGAATTCGAACAAAAAATAGACAAACAATCCCAAACACTCACTTCTCCTCAGACATTGTTCCTCGATGTAGTYAAATTGAAAAAAGAGAAAATATGCGTAGATTCGAAAATTGAAATCGTGGAAAAAATTTCGGAGATTAGCAAAGTTTTTGGATTTTTATATAATATTTTTCACGTGATACCCTAGTTTCTAGTATGCTAAAAAGCATGGCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11367</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>101703</contig_pos>
        <strand>+</strand>
        <context>GAGAAAATAT[A/G]CGTAGATTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCTCAGACATTGTTCCTCGATGTAGTTAAATTGAAAAAAGAGAAAATAT</left_flank>
        <right_flank>CGTAGATTCGAAAATTGAAATCGTGGAAAAAATTTCGGAGATTAGCAAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACGTGTATTTCGTTGGTTGGATCCCATTTTTTCAACGAATCCATCGCTAATTCATCAGCGGAATAAATACATAATTTTCCGTCGTTCGTGAATGTATGGACCACGTAGTTTGTACCATCCGGCTTATCCAAGGATAGCATATATCTTCTGAAAATCAGAATACCGTAAACAACTCTAATAGAACGCCACCAGGCTCGTCAAATTTGAACCAATGTATCTCAATTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACAAAATATGTATCATAATATCAGTAACGTTTTATCAGTTAACCACTTTTTGATGTCTTTCATAAGAACCGAAATATATGGGCTCAAAGATGACAGTTTGGGTGGCGTTGTATTAGAAATAAAGTTTGCAGTAGTTTTGGATTTTCCGAATTCGAACAAAAAATAGACAAACAATCCCAAACACTCACTTCTCCTCAGACATTGTTCCTCGATGTAGTTAAATTGAAAAAAGAGAAAATATGCGTAGATTCGAAAATTGAAATCGTGGAAAAAATTTCGGAGATTAGCAAAGTTTTTGGATTTTTATATAATATTTTTCACGTGATACCCTAGTTTCTAGTATGCTAAAAAGCATGGCTATTCAAAATGACGGCAGGCAGGCTCCATTTTTTTACTCAATTTTATTTTTTTTTTCGCGTTGCATTTTCCTATTTTAAAAGTTTGGGTGACCTGGTTTATTTTTTTACGGACCCTTAAATAAATATTTTCATTTTATACCGTAAAACCTGTATTAGAAGAGCCCCCTTTAATAGAAGGGCCCCTTTAATAGAAGTGTTAACCCAGGGGGACTTGGAAAAATAGAAGGACCCCCTGTAATAGAAGGGCCCTTTGTGATAAAGGACTACCCTTTAAAATGTATTTTGAAATCAGGAAATTTCCATACTTTTCCGGTGAAAAATATTCCAGGAACTCCACAATTTATTAGAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTT</canonical>
            <polymorphic>AAAACGTGTATTTCGTTGGTTGGATCCCATTTTTTCAACGAATCCATCGCTAATTCATCAGCGGAATAAATACATAATTTTCCGTCGTTCGTGAATGTATGGACCACGTAGTTTGTACCATCCGGCTTATCCAAGGATAGCATATATCTTCTGAAAATCAGAATACCGTAAACAACTCTAATAGAACGCCACCAGGCTCGTCAAATTTGAACCAATGTATCTCAATTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACAAAATATGTATCATAATATCAGTAACGTTTTATCAGTTAACCACTTTTTGATGTCTTTCATAAGAACCGAAATATATGGGCTCAAAGATGACAGTTTGGGTGGCGTTGTATTAGAAATAAAGTTTGCAGTAGTTTTGGATTTTCCGAATTCGAACAAAAAATAGACAAACAATCCCAAACACTCACTTCTCCTCAGACATTGTTCCTCGATGTAGTTAAATTGAAAAAAGAGAAAATATRCGTAGATTCGAAAATTGAAATCGTGGAAAAAATTTCGGAGATTAGCAAAGTTTTTGGATTTTTATATAATATTTTTCACGTGATACCCTAGTTTCTAGTATGCTAAAAAGCATGGCTATTCAAAATGACGGCAGGCAGGCTCCATTTTTTTACTCAATTTTATTTTTTTTTTCGCGTTGCATTTTCCTATTTTAAAAGTTTGGGTGACCTGGTTTATTTTTTTACGGACCCTTAAATAAATATTTTCATTTTATACCGTAAAACCTGTATTAGAAGAGCCCCCTTTAATAGAAGGGCCCCTTTAATAGAAGTGTTAACCCAGGGGGACTTGGAAAAATAGAAGGACCCCCTGTAATAGAAGGGCCCTTTGTGATAAAGGACTACCCTTTAAAATGTATTTTGAAATCAGGAAATTTCCATACTTTTCCGGTGAAAAATATTCCAGGAACTCCACAATTTATTAGAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATAAAGTTTGCAGTAGTTTTG</pcr_primer_p1>
		<pcr_primer_p2>ATAGCCATGCTTTTTAGCATAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAATAAAGTTTGCAGTAGTTTTGGATTTTCCGAATTCGAACAAAAAATAGACAAACAATCCCAAACACTCACTTCTCCTCAGACATTGTTCCTCGATGTAGTTAAATTGAAAAAAGAGAAAATATGCGTAGATTCGAAAATTGAAATCGTGGAAAAAATTTCGGAGATTAGCAAAGTTTTTGGATTTTTATATAATATTTTTCACGTGATACCCTAGTTTCTAGTATGCTAAAAAGCATGGCTAT</canonical_amplicon>
		<polymorphic_amplicon>GAAATAAAGTTTGCAGTAGTTTTGGATTTTCCGAATTCGAACAAAAAATAGACAAACAATCCCAAACACTCACTTCTCCTCAGACATTGTTCCTCGATGTAGTTAAATTGAAAAAAGAGAAAATATRCGTAGATTCGAAAATTGAAATCGTGGAAAAAATTTCGGAGATTAGCAAAGTTTTTGGATTTTTATATAATATTTTTCACGTGATACCCTAGTTTCTAGTATGCTAAAAAGCATGGCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11368</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>101793</contig_pos>
        <strand>+</strand>
        <context>GTGATACCCT[A/T]GTTTCTAGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATTAGCAAAGTTTTTGGATTTTTATATAATATTTTTCACGTGATACCCT</left_flank>
        <right_flank>GTTTCTAGTATGCTAAAAAGCATGGCTATTCAAAATGACGGCAGGCAGGC</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGAATGTATGGACCACGTAGTTTGTACCATCCGGCTTATCCAAGGATAGCATATATCTTCTGAAAATCAGAATACCGTAAACAACTCTAATAGAACGCCACCAGGCTCGTCAAATTTGAACCAATGTATCTCAATTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACAAAATATGTATCATAATATCAGTAACGTTTTATCAGTTAACCACTTTTTGATGTCTTTCATAAGAACCGAAATATATGGGCTCAAAGATGACAGTTTGGGTGGCGTTGTATTAGAAATAAAGTTTGCAGTAGTTTTGGATTTTCCGAATTCGAACAAAAAATAGACAAACAATCCCAAACACTCACTTCTCCTCAGACATTGTTCCTCGATGTAGTTAAATTGAAAAAAGAGAAAATATGCGTAGATTCGAAAATTGAAATCGTGGAAAAAATTTCGGAGATTAGCAAAGTTTTTGGATTTTTATATAATATTTTTCACGTGATACCCTAGTTTCTAGTATGCTAAAAAGCATGGCTATTCAAAATGACGGCAGGCAGGCTCCATTTTTTTACTCAATTTTATTTTTTTTTTCGCGTTGCATTTTCCTATTTTAAAAGTTTGGGTGACCTGGTTTATTTTTTTACGGACCCTTAAATAAATATTTTCATTTTATACCGTAAAACCTGTATTAGAAGAGCCCCCTTTAATAGAAGGGCCCCTTTAATAGAAGTGTTAACCCAGGGGGACTTGGAAAAATAGAAGGACCCCCTGTAATAGAAGGGCCCTTTGTGATAAAGGACTACCCTTTAAAATGTATTTTGAAATCAGGAAATTTCCATACTTTTCCGGTGAAAAATATTCCAGGAACTCCACAATTTATTAGAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCAGATCTTCATGAATTTTGAACGAAACTTCGTCTTATATATTCGATGCAAATTTCGGAAAAACTGTCAG</canonical>
            <polymorphic>GTGAATGTATGGACCACGTAGTTTGTACCATCCGGCTTATCCAAGGATAGCATATATCTTCTGAAAATCAGAATACCGTAAACAACTCTAATAGAACGCCACCAGGCTCGTCAAATTTGAACCAATGTATCTCAATTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACAAAATATGTATCATAATATCAGTAACGTTTTATCAGTTAACCACTTTTTGATGTCTTTCATAAGAACCGAAATATATGGGCTCAAAGATGACAGTTTGGGTGGCGTTGTATTAGAAATAAAGTTTGCAGTAGTTTTGGATTTTCCGAATTCGAACAAAAAATAGACAAACAATCCCAAACACTCACTTCTCCTCAGACATTGTTCCTCGATGTAGTTAAATTGAAAAAAGAGAAAATATGCGTAGATTCGAAAATTGAAATCGTGGAAAAAATTTCGGAGATTAGCAAAGTTTTTGGATTTTTATATAATATTTTTCACGTGATACCCTWGTTTCTAGTATGCTAAAAAGCATGGCTATTCAAAATGACGGCAGGCAGGCTCCATTTTTTTACTCAATTTTATTTTTTTTTTCGCGTTGCATTTTCCTATTTTAAAAGTTTGGGTGACCTGGTTTATTTTTTTACGGACCCTTAAATAAATATTTTCATTTTATACCGTAAAACCTGTATTAGAAGAGCCCCCTTTAATAGAAGGGCCCCTTTAATAGAAGTGTTAACCCAGGGGGACTTGGAAAAATAGAAGGACCCCCTGTAATAGAAGGGCCCTTTGTGATAAAGGACTACCCTTTAAAATGTATTTTGAAATCAGGAAATTTCCATACTTTTCCGGTGAAAAATATTCCAGGAACTCCACAATTTATTAGAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCAGATCTTCATGAATTTTGAACGAAACTTCGTCTTATATATTCGATGCAAATTTCGGAAAAACTGTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>498 495 7</canonical_bands>
                <polymorphic_bands>505 495</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACATTGTTCCTCGATGTAGT</pcr_primer_p1>
		<pcr_primer_p2>CCAAACTTTTAAAATAGGAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGACATTGTTCCTCGATGTAGTTAAATTGAAAAAAGAGAAAATATGCGTAGATTCGAAAATTGAAATCGTGGAAAAAATTTCGGAGATTAGCAAAGTTTTTGGATTTTTATATAATATTTTTCACGTGATACCCTAGTTTCTAGTATGCTAAAAAGCATGGCTATTCAAAATGACGGCAGGCAGGCTCCATTTTTTTACTCAATTTTATTTTTTTTTTCGCGTTGCATTTTCCTATTTTAAAAGTTTGG</canonical_amplicon>
		<polymorphic_amplicon>AGACATTGTTCCTCGATGTAGTTAAATTGAAAAAAGAGAAAATATGCGTAGATTCGAAAATTGAAATCGTGGAAAAAATTTCGGAGATTAGCAAAGTTTTTGGATTTTTATATAATATTTTTCACGTGATACCCTWGTTTCTAGTATGCTAAAAAGCATGGCTATTCAAAATGACGGCAGGCAGGCTCCATTTTTTTACTCAATTTTATTTTTTTTTTCGCGTTGCATTTTCCTATTTTAAAAGTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11377</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>144606</contig_pos>
        <strand>+</strand>
        <context>AATATTTTCA[A/G]TTTCCTATGS</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTGTTGAAATATCCATTTTTTCTCTAATTTTCAGACAAATATTTTCA</left_flank>
        <right_flank>TTTCCTATGACGTCACAAGAATCTAAAAATTACTAATCGCTCAAAAATGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTAAATGTCACTCTGCGTACAGCTGTCGCCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTTGCGGCGCCGCACCATCAATCATCGCCCTCACAAGTTCAACTCTTCGAGGGGCATCTTTGAACGGAATTTCGAGAACTTTTTTTTTTCATGTCCCCCCACCTTTAAAAATTGACTGAAAATTCGAAACTGCAAAGAAAAAAAATTTTTTTTTTGAAAAATTAAGTTTTCTGGATCTAAAAACGACTATGTATTCTGAGTCATTTTCAGCAAAACGAAATTTAAAAATTTGTAAATTTTTGCAAATGGCCTAGAGAATGGAAGCTGGGGTGTCGGATTCGAAAAAAACTTTTTTTGTTGAAATATCCATTTTTTCTCTAATTTTCAGACAAATATTTTCAGTTTCCTATGACGTCACAAGAATCTAAAAATTACTAATCGCTCAAAAATGTCAAAAAATCAGAAAAGAGTACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGAGTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTT</canonical>
            <polymorphic>GGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTAAATGTCACTCTGCGTACAGCTGTCGCCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTTGCGGCGCCGCACCATCAATCATCGCCCTCACAAGTTCAACTCTTCGAGGGGCATCTTTGAACGGAATTTCGAGAACTTTTTTTTTTCATGTCCCCCCACCTTTAAAAATTGACTGAAAATTCGAAACTGCAAAGAAAAAAAATTTTTTTTTTGAAAAATTAAGTTTTCTGGATCTAAAAACGACTATGTATTCTGAGTCATTTTCAGCAAAACGAAATTTAAAAATTTGTAAATTTTTGCAAATGGCCTAGAGAATGGAAGCTGGGGTGTCGGATTCGAAAAAAACTTTTTTTGTTGAAATATCCATTTTTTCTCTAATTTTCAGACAAATATTTTCARTTTCCTATGACGTCACAAGAATCTAAAAATTACTAATCGCTCAAAAATGTCAAAAAATCAGAAAAGAGTACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGAGTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGACTATGTATTCTGAGTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTTCTTTTTCTTTCAACTTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CGACTATGTATTCTGAGTCATTTTCAGCAAAACGAAATTTAAAAATTTGTAAATTTTTGCAAATGGCCTAGAGAATGGAAGCTGGGGTGTCGGATTCGAAAAAAACTTTTTTTGTTGAAATATCCATTTTTTCTCTAATTTTCAGACAAATATTTTCAGTTTCCTATGACGTCACAAGAATCTAAAAATTACTAATCGCTCAAAAATGTCAAAAAATCAGAAAAGAGTACAAGTTGAAAGAAAAAGAACAA</canonical_amplicon>
		<polymorphic_amplicon>CGACTATGTATTCTGAGTCATTTTCAGCAAAACGAAATTTAAAAATTTGTAAATTTTTGCAAATGGCCTAGAGAATGGAAGCTGGGGTGTCGGATTCGAAAAAAACTTTTTTTGTTGAAATATCCATTTTTTCTCTAATTTTCAGACAAATATTTTCARTTTCCTATGACGTCACAAGAATCTAAAAATTACTAATCGCTCAAAAATGTCAAAAAATCAGAAAAGAGTACAAGTTGAAAGAAAAAGAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11378</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>144667</contig_pos>
        <strand></strand>
        <context>CAAAAAATCA[G/C]AAAAGAGTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CGTCACAAGAATCTAAAAATTACTAATCGCTCAAAAATGTCAAAAAATCA</left_flank>
        <right_flank>AAAAGAGTACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTACAACGCTAAATGTCACTCTGCGTACAGCTGTCGCCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTTGCGGCGCCGCACCATCAATCATCGCCCTCACAAGTTCAACTCTTCGAGGGGCATCTTTGAACGGAATTTCGAGAACTTTTTTTTTTCATGTCCCCCCACCTTTAAAAATTGACTGAAAATTCGAAACTGCAAAGAAAAAAAATTTTTTTTTTGAAAAATTAAGTTTTCTGGATCTAAAAACGACTATGTATTCTGAGTCATTTTCAGCAAAACGAAATTTAAAAATTTGTAAATTTTTGCAAATGGCCTAGAGAATGGAAGCTGGGGTGTCGGATTCGAAAAAAACTTTTTTTGTTGAAATATCCATTTTTTCTCTAATTTTCAGACAAATATTTTCAGTTTCCTATGACGTCACAAGAATCTAAAAATTACTAATCGCTCAAAAATGTCAAAAAATCAGAAAAGAGTACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGAGTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTG</canonical>
            <polymorphic>TGTACAACGCTAAATGTCACTCTGCGTACAGCTGTCGCCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTTGCGGCGCCGCACCATCAATCATCGCCCTCACAAGTTCAACTCTTCGAGGGGCATCTTTGAACGGAATTTCGAGAACTTTTTTTTTTCATGTCCCCCCACCTTTAAAAATTGACTGAAAATTCGAAACTGCAAAGAAAAAAAATTTTTTTTTTGAAAAATTAAGTTTTCTGGATCTAAAAACGACTATGTATTCTGAGTCATTTTCAGCAAAACGAAATTTAAAAATTTGTAAATTTTTGCAAATGGCCTAGAGAATGGAAGCTGGGGTGTCGGATTCGAAAAAAACTTTTTTTGTTGAAATATCCATTTTTTCTCTAATTTTCAGACAAATATTTTCAGTTTCCTATGACGTCACAAGAATCTAAAAATTACTAATCGCTCAAAAATGTCAAAAAATCASAAAAGAGTACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGAGTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>501 294 78 75 52</canonical_bands>
                <polymorphic_bands>576 294 78 52</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTTTCAGCAAAACGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCAAAAATAACAAATTTCTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>278</pcr_amplicon_size>
		<canonical_amplicon>CATTTTCAGCAAAACGAAATTTAAAAATTTGTAAATTTTTGCAAATGGCCTAGAGAATGGAAGCTGGGGTGTCGGATTCGAAAAAAACTTTTTTTGTTGAAATATCCATTTTTTCTCTAATTTTCAGACAAATATTTTCAGTTTCCTATGACGTCACAAGAATCTAAAAATTACTAATCGCTCAAAAATGTCAAAAAATCAGAAAAGAGTACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGG</canonical_amplicon>
		<polymorphic_amplicon>CATTTTCAGCAAAACGAAATTTAAAAATTTGTAAATTTTTGCAAATGGCCTAGAGAATGGAAGCTGGGGTGTCGGATTCGAAAAAAACTTTTTTTGTTGAAATATCCATTTTTTCTCTAATTTTCAGACAAATATTTTCAGTTTCCTATGACGTCACAAGAATCTAAAAATTACTAATCGCTCAAAAATGTCAAAAAATCASAAAAGAGTACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11379</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>144764</contig_pos>
        <strand></strand>
        <context>CAAATTATTG[A/G]RTTTTGATAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTG</left_flank>
        <right_flank>GTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGCGGCGCCGCACCATCAATCATCGCCCTCACAAGTTCAACTCTTCGAGGGGCATCTTTGAACGGAATTTCGAGAACTTTTTTTTTTCATGTCCCCCCACCTTTAAAAATTGACTGAAAATTCGAAACTGCAAAGAAAAAAAATTTTTTTTTTGAAAAATTAAGTTTTCTGGATCTAAAAACGACTATGTATTCTGAGTCATTTTCAGCAAAACGAAATTTAAAAATTTGTAAATTTTTGCAAATGGCCTAGAGAATGGAAGCTGGGGTGTCGGATTCGAAAAAAACTTTTTTTGTTGAAATATCCATTTTTTCTCTAATTTTCAGACAAATATTTTCAGTTTCCTATGACGTCACAAGAATCTAAAAATTACTAATCGCTCAAAAATGTCAAAAAATCAGAAAAGAGTACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGAGTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAA</canonical>
            <polymorphic>GTTGCGGCGCCGCACCATCAATCATCGCCCTCACAAGTTCAACTCTTCGAGGGGCATCTTTGAACGGAATTTCGAGAACTTTTTTTTTTCATGTCCCCCCACCTTTAAAAATTGACTGAAAATTCGAAACTGCAAAGAAAAAAAATTTTTTTTTTGAAAAATTAAGTTTTCTGGATCTAAAAACGACTATGTATTCTGAGTCATTTTCAGCAAAACGAAATTTAAAAATTTGTAAATTTTTGCAAATGGCCTAGAGAATGGAAGCTGGGGTGTCGGATTCGAAAAAAACTTTTTTTGTTGAAATATCCATTTTTTCTCTAATTTTCAGACAAATATTTTCAGTTTCCTATGACGTCACAAGAATCTAAAAATTACTAATCGCTCAAAAATGTCAAAAAATCAGAAAAGAGTACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGRGTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAGTTGAAAGAAAAAGAACAA</pcr_primer_p1>
		<pcr_primer_p2>TAGAGCAAACTTGCATTATTACC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGAGTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTA</canonical_amplicon>
		<polymorphic_amplicon>ACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGRGTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11380</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>144947</contig_pos>
        <strand></strand>
        <context>AAAATGCTGG[T/C]GAAAAATGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGG</left_flank>
        <right_flank>GAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGACTATGTATTCTGAGTCATTTTCAGCAAAACGAAATTTAAAAATTTGTAAATTTTTGCAAATGGCCTAGAGAATGGAAGCTGGGGTGTCGGATTCGAAAAAAACTTTTTTTGTTGAAATATCCATTTTTTCTCTAATTTTCAGACAAATATTTTCAGTTTCCTATGACGTCACAAGAATCTAAAAATTACTAATCGCTCAAAAATGTCAAAAAATCAGAAAAGAGTACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGAGTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGCCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAATATATTCATAACTTCA</canonical>
            <polymorphic>CGACTATGTATTCTGAGTCATTTTCAGCAAAACGAAATTTAAAAATTTGTAAATTTTTGCAAATGGCCTAGAGAATGGAAGCTGGGGTGTCGGATTCGAAAAAAACTTTTTTTGTTGAAATATCCATTTTTTCTCTAATTTTCAGACAAATATTTTCAGTTTCCTATGACGTCACAAGAATCTAAAAATTACTAATCGCTCAAAAATGTCAAAAAATCAGAAAAGAGTACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGAGTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGYGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGCCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAATATATTCATAACTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>203 102 91 89 85 78 78 50 44 39 31 29 27 25 17 10 2</canonical_bands>
                <polymorphic_bands>305 91 89 85 78 78 50 44 39 31 29 27 25 17 10 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAATAGTTTTGAACGGGTAAT</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTTGAAAACTTCAGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>AAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGYGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11381</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>144976</contig_pos>
        <strand></strand>
        <context>GAAAATTTTT[T/A]AAAGAAGTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTT</left_flank>
        <right_flank>AAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACGAAATTTAAAAATTTGTAAATTTTTGCAAATGGCCTAGAGAATGGAAGCTGGGGTGTCGGATTCGAAAAAAACTTTTTTTGTTGAAATATCCATTTTTTCTCTAATTTTCAGACAAATATTTTCAGTTTCCTATGACGTCACAAGAATCTAAAAATTACTAATCGCTCAAAAATGTCAAAAAATCAGAAAAGAGTACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGAGTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGCCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAATATATTCATAACTTCAGATGATTGTGGAGACCCCGTTGGTGGAAA</canonical>
            <polymorphic>AAACGAAATTTAAAAATTTGTAAATTTTTGCAAATGGCCTAGAGAATGGAAGCTGGGGTGTCGGATTCGAAAAAAACTTTTTTTGTTGAAATATCCATTTTTTCTCTAATTTTCAGACAAATATTTTCAGTTTCCTATGACGTCACAAGAATCTAAAAATTACTAATCGCTCAAAAATGTCAAAAAATCAGAAAAGAGTACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGAGTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTWAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGCCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAATATATTCATAACTTCAGATGATTGTGGAGACCCCGTTGGTGGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 489 11</canonical_bands>
                <polymorphic_bands>989 11</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>489 344 157 10</canonical_bands>
                <polymorphic_bands>646 344 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAATAGTTTTGAACGGGTAAT</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTTGAAAACTTCAGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>AAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTWAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11382</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>145032</contig_pos>
        <strand>+</strand>
        <context>GGAGTTTTGG[A/G]AGAATTCGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGG</left_flank>
        <right_flank>AGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGTCGGATTCGAAAAAAACTTTTTTTGTTGAAATATCCATTTTTTCTCTAATTTTCAGACAAATATTTTCAGTTTCCTATGACGTCACAAGAATCTAAAAATTACTAATCGCTCAAAAATGTCAAAAAATCAGAAAAGAGTACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGAGTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGCCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAATATATTCATAACTTCAGATGATTGTGGAGACCCCGTTGGTGGAAATGTGAGAGAATTTTCATGAAAAATTTTGTTGACTTTCCAAATAAATTTTCCCATGA</canonical>
            <polymorphic>GGTGTCGGATTCGAAAAAAACTTTTTTTGTTGAAATATCCATTTTTTCTCTAATTTTCAGACAAATATTTTCAGTTTCCTATGACGTCACAAGAATCTAAAAATTACTAATCGCTCAAAAATGTCAAAAAATCAGAAAAGAGTACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGAGTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGRAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGCCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAATATATTCATAACTTCAGATGATTGTGGAGACCCCGTTGGTGGAAATGTGAGAGAATTTTCATGAAAAATTTTGTTGACTTTCCAAATAAATTTTCCCATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAATAGTTTTGAACGGGTAAT</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTTGAAAACTTCAGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>AAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGRAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11383</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>145049</contig_pos>
        <strand>+</strand>
        <context>CGCAACAGAG[C/T]GCTTTTACTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAG</left_flank>
        <right_flank>GCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTTTTTTTGTTGAAATATCCATTTTTTCTCTAATTTTCAGACAAATATTTTCAGTTTCCTATGACGTCACAAGAATCTAAAAATTACTAATCGCTCAAAAATGTCAAAAAATCAGAAAAGAGTACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGAGTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGCCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAATATATTCATAACTTCAGATGATTGTGGAGACCCCGTTGGTGGAAATGTGAGAGAATTTTCATGAAAAATTTTGTTGACTTTCCAAATAAATTTTCCCATGAATTATAACCTCCAGTTC</canonical>
            <polymorphic>AAACTTTTTTTGTTGAAATATCCATTTTTTCTCTAATTTTCAGACAAATATTTTCAGTTTCCTATGACGTCACAAGAATCTAAAAATTACTAATCGCTCAAAAATGTCAAAAAATCAGAAAAGAGTACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGAGTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGYGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGCCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAATATATTCATAACTTCAGATGATTGTGGAGACCCCGTTGGTGGAAATGTGAGAGAATTTTCATGAAAAATTTTGTTGACTTTCCAAATAAATTTTCCCATGAATTATAACCTCCAGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>203 102 91 78 78 72 69 50 44 39 39 31 27 25 17 15 10 8 2</canonical_bands>
                <polymorphic_bands>203 141 91 78 78 72 69 50 44 39 31 27 25 17 15 10 8 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAATAGTTTTGAACGGGTAAT</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTTGAAAACTTCAGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>AAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGYGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11384</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>145121</contig_pos>
        <strand>+</strand>
        <context>AATTTTCAAA[A/T]ATCTTGCGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAA</left_flank>
        <right_flank>ATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGAATCTAAAAATTACTAATCGCTCAAAAATGTCAAAAAATCAGAAAAGAGTACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGAGTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGCCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAATATATTCATAACTTCAGATGATTGTGGAGACCCCGTTGGTGGAAATGTGAGAGAATTTTCATGAAAAATTTTGTTGACTTTCCAAATAAATTTTCCCATGAATTATAACCTCCAGTTCATACATAATCCATTAATTGCTATCATTTAGTGTGGGAGTCAATTTCTTCAAAGTTTCAGTTCCTCCAAATGC</canonical>
            <polymorphic>CAAGAATCTAAAAATTACTAATCGCTCAAAAATGTCAAAAAATCAGAAAAGAGTACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGAGTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAAWATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGCCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAATATATTCATAACTTCAGATGATTGTGGAGACCCCGTTGGTGGAAATGTGAGAGAATTTTCATGAAAAATTTTGTTGACTTTCCAAATAAATTTTCCCATGAATTATAACCTCCAGTTCATACATAATCCATTAATTGCTATCATTTAGTGTGGGAGTCAATTTCTTCAAAGTTTCAGTTCCTCCAAATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAAGTTGAAAACCGGAGT</pcr_primer_p1>
		<pcr_primer_p2>AATTATTAGGGCAGAAAGTGC</pcr_primer_p2>
		<pcr_amplicon_size>326</pcr_amplicon_size>
		<canonical_amplicon>ACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATT</canonical_amplicon>
		<polymorphic_amplicon>ACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAAWATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11385</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>145602</contig_pos>
        <strand>+</strand>
        <context>TTTCTTCAAA[A/G]TTTCAGTTCM</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATAATCCATTAATTGCTATCATTTAGTGTGGGAGTCAATTTCTTCAAA</left_flank>
        <right_flank>TTTCAGTTCCTCCAAATGCCTCGAAAAGACCGATCGTGTTCGTGGAGTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGCCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAATATATTCATAACTTCAGATGATTGTGGAGACCCCGTTGGTGGAAATGTGAGAGAATTTTCATGAAAAATTTTGTTGACTTTCCAAATAAATTTTCCCATGAATTATAACCTCCAGTTCATACATAATCCATTAATTGCTATCATTTAGTGTGGGAGTCAATTTCTTCAAAGTTTCAGTTCCTCCAAATGCCTCGAAAAGACCGATCGTGTTCGTGGAGTGGACGGCCACTTTGGATGGAAATTGCGGAAGCGACAAGGGTTAAGGTAGGACATATTTATATAGATATATCGTAGCCTATGATTTGCAAACTCTAGGCCACGGAGGAGATGATAATTTGGGGGTATTGTATAATGGGGTCAATAATGATTTTTTTTTTAATTTTTTGCATTTTTTTCCGAACTTTTTTGAGTTTCTAACATACTTGAAACTTTTCGAAATTCCGATTTTCGCGAAACTTCCAAAAAGGTCTTGGTCTAAAAAATAAGTCACGATCTAATTTTAGGGTTTTCTAGGTCATGGTCTAATTTCTTTAGTTTGCCACGTCGTGACCTAATTTATTTCTAGATTTTTAAGTCATGACGTAATTTTCTAAACTTTCCAGGTCATGAATTAAGTCATGACCTTAACTTAATTGTTTGCCTTTCTAGGTGATGGCATAGTTTTTCGGATT</canonical>
            <polymorphic>AGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGCCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAATATATTCATAACTTCAGATGATTGTGGAGACCCCGTTGGTGGAAATGTGAGAGAATTTTCATGAAAAATTTTGTTGACTTTCCAAATAAATTTTCCCATGAATTATAACCTCCAGTTCATACATAATCCATTAATTGCTATCATTTAGTGTGGGAGTCAATTTCTTCAAARTTTCAGTTCCTCCAAATGCCTCGAAAAGACCGATCGTGTTCGTGGAGTGGACGGCCACTTTGGATGGAAATTGCGGAAGCGACAAGGGTTAAGGTAGGACATATTTATATAGATATATCGTAGCCTATGATTTGCAAACTCTAGGCCACGGAGGAGATGATAATTTGGGGGTATTGTATAATGGGGTCAATAATGATTTTTTTTTTAATTTTTTGCATTTTTTTCCGAACTTTTTTGAGTTTCTAACATACTTGAAACTTTTCGAAATTCCGATTTTCGCGAAACTTCCAAAAAGGTCTTGGTCTAAAAAATAAGTCACGATCTAATTTTAGGGTTTTCTAGGTCATGGTCTAATTTCTTTAGTTTGCCACGTCGTGACCTAATTTATTTCTAGATTTTTAAGTCATGACGTAATTTTCTAAACTTTCCAGGTCATGAATTAAGTCATGACCTTAACTTAATTGTTTGCCTTTCTAGGTGATGGCATAGTTTTTCGGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGAATTATAACCTCCAGTTCA</pcr_primer_p1>
		<pcr_primer_p2>AATACCCCCAAATTATCATCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATGAATTATAACCTCCAGTTCATACATAATCCATTAATTGCTATCATTTAGTGTGGGAGTCAATTTCTTCAAAGTTTCAGTTCCTCCAAATGCCTCGAAAAGACCGATCGTGTTCGTGGAGTGGACGGCCACTTTGGATGGAAATTGCGGAAGCGACAAGGGTTAAGGTAGGACATATTTATATAGATATATCGTAGCCTATGATTTGCAAACTCTAGGCCACGGAGGAGATGATAATTTGGGGGTATT</canonical_amplicon>
		<polymorphic_amplicon>CATGAATTATAACCTCCAGTTCATACATAATCCATTAATTGCTATCATTTAGTGTGGGAGTCAATTTCTTCAAARTTTCAGTTCCTCCAAATGCCTCGAAAAGACCGATCGTGTTCGTGGAGTGGACGGCCACTTTGGATGGAAATTGCGGAAGCGACAAGGGTTAAGGTAGGACATATTTATATAGATATATCGTAGCCTATGATTTGCAAACTCTAGGCCACGGAGGAGATGATAATTTGGGGGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11386</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>145578</contig_pos>
        <strand>+</strand>
        <context>GCTATCATTT[A/G]GTGTGGGAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATGAATTATAACCTCCAGTTCATACATAATCCATTAATTGCTATCATTT</left_flank>
        <right_flank>GTGTGGGAGTCAATTTCTTCAAAGTTTCAGTTCCTCCAAATGCCTCGAAA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGCCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAATATATTCATAACTTCAGATGATTGTGGAGACCCCGTTGGTGGAAATGTGAGAGAATTTTCATGAAAAATTTTGTTGACTTTCCAAATAAATTTTCCCATGAATTATAACCTCCAGTTCATACATAATCCATTAATTGCTATCATTTAGTGTGGGAGTCAATTTCTTCAAAGTTTCAGTTCCTCCAAATGCCTCGAAAAGACCGATCGTGTTCGTGGAGTGGACGGCCACTTTGGATGGAAATTGCGGAAGCGACAAGGGTTAAGGTAGGACATATTTATATAGATATATCGTAGCCTATGATTTGCAAACTCTAGGCCACGGAGGAGATGATAATTTGGGGGTATTGTATAATGGGGTCAATAATGATTTTTTTTTTAATTTTTTGCATTTTTTTCCGAACTTTTTTGAGTTTCTAACATACTTGAAACTTTTCGAAATTCCGATTTTCGCGAAACTTCCAAAAAGGTCTTGGTCTAAAAAATAAGTCACGATCTAATTTTAGGGTTTTCTAGGTCATGGTCTAATTTCTTTAGTTTGCCACGTCGTGACCTAATTTATTTCTAGATTTTTAAGTCATGACGTAATTTTCTAAACTTTCCAGGTCATGAATTAAGTCATGACCTTAACTTAATTGTTTGCCTTTCTA</canonical>
            <polymorphic>ATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGCCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAATATATTCATAACTTCAGATGATTGTGGAGACCCCGTTGGTGGAAATGTGAGAGAATTTTCATGAAAAATTTTGTTGACTTTCCAAATAAATTTTCCCATGAATTATAACCTCCAGTTCATACATAATCCATTAATTGCTATCATTTRGTGTGGGAGTCAATTTCTTCAAAGTTTCAGTTCCTCCAAATGCCTCGAAAAGACCGATCGTGTTCGTGGAGTGGACGGCCACTTTGGATGGAAATTGCGGAAGCGACAAGGGTTAAGGTAGGACATATTTATATAGATATATCGTAGCCTATGATTTGCAAACTCTAGGCCACGGAGGAGATGATAATTTGGGGGTATTGTATAATGGGGTCAATAATGATTTTTTTTTTAATTTTTTGCATTTTTTTCCGAACTTTTTTGAGTTTCTAACATACTTGAAACTTTTCGAAATTCCGATTTTCGCGAAACTTCCAAAAAGGTCTTGGTCTAAAAAATAAGTCACGATCTAATTTTAGGGTTTTCTAGGTCATGGTCTAATTTCTTTAGTTTGCCACGTCGTGACCTAATTTATTTCTAGATTTTTAAGTCATGACGTAATTTTCTAAACTTTCCAGGTCATGAATTAAGTCATGACCTTAACTTAATTGTTTGCCTTTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGAAAAATTTTGTTGACTTTC</pcr_primer_p1>
		<pcr_primer_p2>GAGTTTGCAAATCATAGGCTAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CATGAAAAATTTTGTTGACTTTCCAAATAAATTTTCCCATGAATTATAACCTCCAGTTCATACATAATCCATTAATTGCTATCATTTAGTGTGGGAGTCAATTTCTTCAAAGTTTCAGTTCCTCCAAATGCCTCGAAAAGACCGATCGTGTTCGTGGAGTGGACGGCCACTTTGGATGGAAATTGCGGAAGCGACAAGGGTTAAGGTAGGACATATTTATATAGATATATCGTAGCCTATGATTTGCAAACTC</canonical_amplicon>
		<polymorphic_amplicon>CATGAAAAATTTTGTTGACTTTCCAAATAAATTTTCCCATGAATTATAACCTCCAGTTCATACATAATCCATTAATTGCTATCATTTRGTGTGGGAGTCAATTTCTTCAAAGTTTCAGTTCCTCCAAATGCCTCGAAAAGACCGATCGTGTTCGTGGAGTGGACGGCCACTTTGGATGGAAATTGCGGAAGCGACAAGGGTTAAGGTAGGACATATTTATATAGATATATCGTAGCCTATGATTTGCAAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11387</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>145517</contig_pos>
        <strand>+</strand>
        <context>GACTTTCCAA[A/C]TAAATTTTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGGTGGAAATGTGAGAGAATTTTCATGAAAAATTTTGTTGACTTTCCAA</left_flank>
        <right_flank>TAAATTTTCCCATGAATTATAACCTCCAGTTCATACATAATCCATTAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGCCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAATATATTCATAACTTCAGATGATTGTGGAGACCCCGTTGGTGGAAATGTGAGAGAATTTTCATGAAAAATTTTGTTGACTTTCCAAATAAATTTTCCCATGAATTATAACCTCCAGTTCATACATAATCCATTAATTGCTATCATTTAGTGTGGGAGTCAATTTCTTCAAAGTTTCAGTTCCTCCAAATGCCTCGAAAAGACCGATCGTGTTCGTGGAGTGGACGGCCACTTTGGATGGAAATTGCGGAAGCGACAAGGGTTAAGGTAGGACATATTTATATAGATATATCGTAGCCTATGATTTGCAAACTCTAGGCCACGGAGGAGATGATAATTTGGGGGTATTGTATAATGGGGTCAATAATGATTTTTTTTTTAATTTTTTGCATTTTTTTCCGAACTTTTTTGAGTTTCTAACATACTTGAAACTTTTCGAAATTCCGATTTTCGCGAAACTTCCAAAAAGGTCTTGGTCTAAAAAATAAGTCACGATCTAATTTTAGGGTTTTCTAGGTCATGGTCTAATTTCTTTAGTTTGCCACGTCGTGACCTAATTTATTTCTAGATTTTTAAGTCATGACGTAAT</canonical>
            <polymorphic>AACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGCCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAATATATTCATAACTTCAGATGATTGTGGAGACCCCGTTGGTGGAAATGTGAGAGAATTTTCATGAAAAATTTTGTTGACTTTCCAAMTAAATTTTCCCATGAATTATAACCTCCAGTTCATACATAATCCATTAATTGCTATCATTTAGTGTGGGAGTCAATTTCTTCAAAGTTTCAGTTCCTCCAAATGCCTCGAAAAGACCGATCGTGTTCGTGGAGTGGACGGCCACTTTGGATGGAAATTGCGGAAGCGACAAGGGTTAAGGTAGGACATATTTATATAGATATATCGTAGCCTATGATTTGCAAACTCTAGGCCACGGAGGAGATGATAATTTGGGGGTATTGTATAATGGGGTCAATAATGATTTTTTTTTTAATTTTTTGCATTTTTTTCCGAACTTTTTTGAGTTTCTAACATACTTGAAACTTTTCGAAATTCCGATTTTCGCGAAACTTCCAAAAAGGTCTTGGTCTAAAAAATAAGTCACGATCTAATTTTAGGGTTTTCTAGGTCATGGTCTAATTTCTTTAGTTTGCCACGTCGTGACCTAATTTATTTCTAGATTTTTAAGTCATGACGTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATTGTATTTTTCAGCAATC</pcr_primer_p1>
		<pcr_primer_p2>AATGATAGCAATTAATGGATTATGTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGCCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAATATATTCATAACTTCAGATGATTGTGGAGACCCCGTTGGTGGAAATGTGAGAGAATTTTCATGAAAAATTTTGTTGACTTTCCAAATAAATTTTCCCATGAATTATAACCTCCAGTTCATACATAATCCATTAATTGCTATCATT</canonical_amplicon>
		<polymorphic_amplicon>CAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGCCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAATATATTCATAACTTCAGATGATTGTGGAGACCCCGTTGGTGGAAATGTGAGAGAATTTTCATGAAAAATTTTGTTGACTTTCCAAMTAAATTTTCCCATGAATTATAACCTCCAGTTCATACATAATCCATTAATTGCTATCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11388</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>145372</contig_pos>
        <strand>+</strand>
        <context>GTGATTCATG[C/T]CTTGAAGCAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATG</left_flank>
        <right_flank>CTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGCCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAATATATTCATAACTTCAGATGATTGTGGAGACCCCGTTGGTGGAAATGTGAGAGAATTTTCATGAAAAATTTTGTTGACTTTCCAAATAAATTTTCCCATGAATTATAACCTCCAGTTCATACATAATCCATTAATTGCTATCATTTAGTGTGGGAGTCAATTTCTTCAAAGTTTCAGTTCCTCCAAATGCCTCGAAAAGACCGATCGTGTTCGTGGAGTGGACGGCCACTTTGGATGGAAATTGCGGAAGCGACAAGGGTTAAGGTAGGACATATTTATATAGATATATCGTAGCCTATGATTTGCAAACTCTAGGCCACGGAGGAGATGATAATTTGGGGGTATTGTATAATGGGGTCAATAATGATTTTTTTTTTAATTTTTTGCATTTTTTTCCGAACTTTTTTGAGTTTCTAACATACTTGAAACTTTTCGAAATTC</canonical>
            <polymorphic>GCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGYCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAATATATTCATAACTTCAGATGATTGTGGAGACCCCGTTGGTGGAAATGTGAGAGAATTTTCATGAAAAATTTTGTTGACTTTCCAAATAAATTTTCCCATGAATTATAACCTCCAGTTCATACATAATCCATTAATTGCTATCATTTAGTGTGGGAGTCAATTTCTTCAAAGTTTCAGTTCCTCCAAATGCCTCGAAAAGACCGATCGTGTTCGTGGAGTGGACGGCCACTTTGGATGGAAATTGCGGAAGCGACAAGGGTTAAGGTAGGACATATTTATATAGATATATCGTAGCCTATGATTTGCAAACTCTAGGCCACGGAGGAGATGATAATTTGGGGGTATTGTATAATGGGGTCAATAATGATTTTTTTTTTAATTTTTTGCATTTTTTTCCGAACTTTTTTGAGTTTCTAACATACTTGAAACTTTTCGAAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTTTCTGCCCTAATAATTTC</pcr_primer_p1>
		<pcr_primer_p2>GGATTATGTATGAACTGGAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CACTTTCTGCCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGCCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAATATATTCATAACTTCAGATGATTGTGGAGACCCCGTTGGTGGAAATGTGAGAGAATTTTCATGAAAAATTTTGTTGACTTTCCAAATAAATTTTCCCATGAATTATAACCTCCAGTTCATACATAATCC</canonical_amplicon>
		<polymorphic_amplicon>CACTTTCTGCCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGYCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAATATATTCATAACTTCAGATGATTGTGGAGACCCCGTTGGTGGAAATGTGAGAGAATTTTCATGAAAAATTTTGTTGACTTTCCAAATAAATTTTCCCATGAATTATAACCTCCAGTTCATACATAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11389</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>145207</contig_pos>
        <strand></strand>
        <context>CTMATTTTTT[C/A]GTTTCAAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTT</left_flank>
        <right_flank>GTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGAGTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGCCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAATATATTCATAACTTCAGATGATTGTGGAGACCCCGTTGGTGGAAATGTGAGAGAATTTTCATGAAAAATTTTGTTGACTTTCCAAATAAATTTTCCCATGAATTATAACCTCCAGTTCATACATAATCCATTAATTGCTATCATTTAGTGTGGGAGTCAATTTCTTCAAAGTTTCAGTTCCTCCAAATGCCTCGAAAAGACCGATCGTGTTCGTGGAGTGGACGGCCACTTTGGATGGAAATTGCGGAAGCGACAAGGGTTAAGGTAGGACATATT</canonical>
            <polymorphic>GTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGAGTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTMGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGCCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAATATATTCATAACTTCAGATGATTGTGGAGACCCCGTTGGTGGAAATGTGAGAGAATTTTCATGAAAAATTTTGTTGACTTTCCAAATAAATTTTCCCATGAATTATAACCTCCAGTTCATACATAATCCATTAATTGCTATCATTTAGTGTGGGAGTCAATTTCTTCAAAGTTTCAGTTCCTCCAAATGCCTCGAAAAGACCGATCGTGTTCGTGGAGTGGACGGCCACTTTGGATGGAAATTGCGGAAGCGACAAGGGTTAAGGTAGGACATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCACTTTTTGAACTGAAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGAAATTATTAGGGCAGAA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>GCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTMGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11390</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>145168</contig_pos>
        <strand>+</strand>
        <context>TGWCGGAGTG[C/T]AAGTTCTACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTG</left_flank>
        <right_flank>AAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGAGTACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGAGTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGCCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAATATATTCATAACTTCAGATGATTGTGGAGACCCCGTTGGTGGAAATGTGAGAGAATTTTCATGAAAAATTTTGTTGACTTTCCAAATAAATTTTCCCATGAATTATAACCTCCAGTTCATACATAATCCATTAATTGCTATCATTTAGTGTGGGAGTCAATTTCTTCAAAGTTTCAGTTCCTCCAAATGCCTCGAAAAGACCGATCGTGTTCGTGGAGTGGACGGCCACTTTGGATG</canonical>
            <polymorphic>AAAGAGTACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGAGTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGYAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGCCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAATATATTCATAACTTCAGATGATTGTGGAGACCCCGTTGGTGGAAATGTGAGAGAATTTTCATGAAAAATTTTGTTGACTTTCCAAATAAATTTTCCCATGAATTATAACCTCCAGTTCATACATAATCCATTAATTGCTATCATTTAGTGTGGGAGTCAATTTCTTCAAAGTTTCAGTTCCTCCAAATGCCTCGAAAAGACCGATCGTGTTCGTGGAGTGGACGGCCACTTTGGATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>250 221 212 125 63 53 46 30</canonical_bands>
                <polymorphic_bands>433 250 125 63 53 46 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCACTTTTTGAACTGAAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGAAATTATTAGGGCAGAA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>GCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGYAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11391</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>145160</contig_pos>
        <strand>+</strand>
        <context>ATAATAATTG[A/T]CGGAGTGYAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTG</left_flank>
        <right_flank>CGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCAGAAAAGAGTACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGAGTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGCCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAATATATTCATAACTTCAGATGATTGTGGAGACCCCGTTGGTGGAAATGTGAGAGAATTTTCATGAAAAATTTTGTTGACTTTCCAAATAAATTTTCCCATGAATTATAACCTCCAGTTCATACATAATCCATTAATTGCTATCATTTAGTGTGGGAGTCAATTTCTTCAAAGTTTCAGTTCCTCCAAATGCCTCGAAAAGACCGATCGTGTTCGTGGAGTGGACGGCCAC</canonical>
            <polymorphic>AAATCAGAAAAGAGTACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGAGTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGWCGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGCCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAATATATTCATAACTTCAGATGATTGTGGAGACCCCGTTGGTGGAAATGTGAGAGAATTTTCATGAAAAATTTTGTTGACTTTCCAAATAAATTTTCCCATGAATTATAACCTCCAGTTCATACATAATCCATTAATTGCTATCATTTAGTGTGGGAGTCAATTTCTTCAAAGTTTCAGTTCCTCCAAATGCCTCGAAAAGACCGATCGTGTTCGTGGAGTGGACGGCCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCACTTTTTGAACTGAAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGAAATTATTAGGGCAGAA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>GCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGWCGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11394</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>168039</contig_pos>
        <strand>+</strand>
        <context>TCGCCGACTA[C/T]CCTCTCGTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCCCCCATCAGGATGAGCCGACAACATCGAAATCCACAGTCGCCGACTA</left_flank>
        <right_flank>CCTCTCGTACACTTCTCCCCTCGACGTCATCAAAATTCCGAACGATAATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAGAGACATAGAAAACGCTAATTGGTCTAGAATTCCAAATTTCACCCAAAAAGCCAACGTGGCCTAGAATTCCTGATATGGCCTAGAAATTCAAGTTTGACCTAGGAATCCCAGTTTGGCCTAAAAATTCAACCATGGCCTAGGAATCAAAATTTGTCTTAGAATTTCAAAACTTGATGGCCAAGCTTTTAAAGTTTGGAAATCCGATTTTCTAGAGATGACTCGAGAATTTCAAGGTTGCCTAGATATCGTTAGCTAGCTAGAAACCTTCCAAATTCACTCACGGACTAACACCTTCATTTTTCTCTGCCTCTCTCTCTGCCTCTCTCTTCATTCTGTACACTCTCTGATCCTTTCTTCTTCAGAATCCTCTGTCCAAGTATTGACGTACTGAAGAACTGAAATTCCCTCTCTCCCCCGTTGAGAATGATCCTAAACATTCTCCGACTCCCCCATCAGGATGAGCCGACAACATCGAAATCCACAGTCGCCGACTATCCTCTCGTACACTTCTCCCCTCGACGTCATCAAAATTCCGAACGATAATCAGCGTTGGTGATTCTGAAGTTATAAAAGATTCGAGTCTAACCGACGAGGAGCTCTACAACATCATTCACGCATCACCATGCATCGCTCGAAAACCATCTACAGTATCCTCAACGGATTCTGGATATCTTGGGTCGTCTGGAGCCAGCTCGTCGTGTGTCAGAAGTCGTGAAGGATCGACAGTATCCTCAACGATTACGGTAGATCGGACTAGACGTGGTGGATCGACGACGTCTACTGAGAATTCAGAAGCAGAGTCCGAGAGTAGTTATTCGAGTTTTGCTTCGATCGCATCGACGGCTTCAAAATATTTGGGACGCGCTGCGGATTGTTTGGTCTTGATGACGAAAAGAAATGGATGGAGTGATGGTAATTATAGATTGATTTACAGAGAAACATTTTCAAACTTCCAGAGGGTTTTCACATGTTTTAAAAAATTCAAAAATTCAAAA</canonical>
            <polymorphic>CAAAGAGACATAGAAAACGCTAATTGGTCTAGAATTCCAAATTTCACCCAAAAAGCCAACGTGGCCTAGAATTCCTGATATGGCCTAGAAATTCAAGTTTGACCTAGGAATCCCAGTTTGGCCTAAAAATTCAACCATGGCCTAGGAATCAAAATTTGTCTTAGAATTTCAAAACTTGATGGCCAAGCTTTTAAAGTTTGGAAATCCGATTTTCTAGAGATGACTCGAGAATTTCAAGGTTGCCTAGATATCGTTAGCTAGCTAGAAACCTTCCAAATTCACTCACGGACTAACACCTTCATTTTTCTCTGCCTCTCTCTCTGCCTCTCTCTTCATTCTGTACACTCTCTGATCCTTTCTTCTTCAGAATCCTCTGTCCAAGTATTGACGTACTGAAGAACTGAAATTCCCTCTCTCCCCCGTTGAGAATGATCCTAAACATTCTCCGACTCCCCCATCAGGATGAGCCGACAACATCGAAATCCACAGTCGCCGACTAYCCTCTCGTACACTTCTCCCCTCGACGTCATCAAAATTCCGAACGATAATCAGCGTTGGTGATTCTGAAGTTATAAAAGATTCGAGTCTAACCGACGAGGAGCTCTACAACATCATTCACGCATCACCATGCATCGCTCGAAAACCATCTACAGTATCCTCAACGGATTCTGGATATCTTGGGTCGTCTGGAGCCAGCTCGTCGTGTGTCAGAAGTCGTGAAGGATCGACAGTATCCTCAACGATTACGGTAGATCGGACTAGACGTGGTGGATCGACGACGTCTACTGAGAATTCAGAAGCAGAGTCCGAGAGTAGTTATTCGAGTTTTGCTTCGATCGCATCGACGGCTTCAAAATATTTGGGACGCGCTGCGGATTGTTTGGTCTTGATGACGAAAAGAAATGGATGGAGTGATGGTAATTATAGATTGATTTACAGAGAAACATTTTCAAACTTCCAGAGGGTTTTCACATGTTTTAAAAAATTCAAAAATTCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGTACACTCTCTGATCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>TCGAATCTTTTATAACTTCAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTGTACACTCTCTGATCCTTTCTTCTTCAGAATCCTCTGTCCAAGTATTGACGTACTGAAGAACTGAAATTCCCTCTCTCCCCCGTTGAGAATGATCCTAAACATTCTCCGACTCCCCCATCAGGATGAGCCGACAACATCGAAATCCACAGTCGCCGACTATCCTCTCGTACACTTCTCCCCTCGACGTCATCAAAATTCCGAACGATAATCAGCGTTGGTGATTCTGAAGTTATAAAAGATTCGA</canonical_amplicon>
		<polymorphic_amplicon>TCTGTACACTCTCTGATCCTTTCTTCTTCAGAATCCTCTGTCCAAGTATTGACGTACTGAAGAACTGAAATTCCCTCTCTCCCCCGTTGAGAATGATCCTAAACATTCTCCGACTCCCCCATCAGGATGAGCCGACAACATCGAAATCCACAGTCGCCGACTAYCCTCTCGTACACTTCTCCCCTCGACGTCATCAAAATTCCGAACGATAATCAGCGTTGGTGATTCTGAAGTTATAAAAGATTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11395</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>168174</contig_pos>
        <strand>+</strand>
        <context>ACCATGCATC[C/G]CTCGAAAACC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTCTAACCGACGAGGAGCTCTACAACATCATTCACGCATCACCATGCATC</left_flank>
        <right_flank>CTCGAAAACCATCTACAGTATCCTCAACGGATTCTGGATATCTTGGGTCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGGCCTAGGAATCAAAATTTGTCTTAGAATTTCAAAACTTGATGGCCAAGCTTTTAAAGTTTGGAAATCCGATTTTCTAGAGATGACTCGAGAATTTCAAGGTTGCCTAGATATCGTTAGCTAGCTAGAAACCTTCCAAATTCACTCACGGACTAACACCTTCATTTTTCTCTGCCTCTCTCTCTGCCTCTCTCTTCATTCTGTACACTCTCTGATCCTTTCTTCTTCAGAATCCTCTGTCCAAGTATTGACGTACTGAAGAACTGAAATTCCCTCTCTCCCCCGTTGAGAATGATCCTAAACATTCTCCGACTCCCCCATCAGGATGAGCCGACAACATCGAAATCCACAGTCGCCGACTATCCTCTCGTACACTTCTCCCCTCGACGTCATCAAAATTCCGAACGATAATCAGCGTTGGTGATTCTGAAGTTATAAAAGATTCGAGTCTAACCGACGAGGAGCTCTACAACATCATTCACGCATCACCATGCATCGCTCGAAAACCATCTACAGTATCCTCAACGGATTCTGGATATCTTGGGTCGTCTGGAGCCAGCTCGTCGTGTGTCAGAAGTCGTGAAGGATCGACAGTATCCTCAACGATTACGGTAGATCGGACTAGACGTGGTGGATCGACGACGTCTACTGAGAATTCAGAAGCAGAGTCCGAGAGTAGTTATTCGAGTTTTGCTTCGATCGCATCGACGGCTTCAAAATATTTGGGACGCGCTGCGGATTGTTTGGTCTTGATGACGAAAAGAAATGGATGGAGTGATGGTAATTATAGATTGATTTACAGAGAAACATTTTCAAACTTCCAGAGGGTTTTCACATGTTTTAAAAAATTCAAAAATTCAAAAAATTTAATTGCTCAATTCAAAATCTTCCATTTTCAGCGGGCTCACCAGCCGATGAAAAGTCATCAGGATCACTGGATGCTCAATCGTGGACCACTGCAATTCAATCGGCTCTAATGCCAGTGACCCCACAGAGTT</canonical>
            <polymorphic>CATGGCCTAGGAATCAAAATTTGTCTTAGAATTTCAAAACTTGATGGCCAAGCTTTTAAAGTTTGGAAATCCGATTTTCTAGAGATGACTCGAGAATTTCAAGGTTGCCTAGATATCGTTAGCTAGCTAGAAACCTTCCAAATTCACTCACGGACTAACACCTTCATTTTTCTCTGCCTCTCTCTCTGCCTCTCTCTTCATTCTGTACACTCTCTGATCCTTTCTTCTTCAGAATCCTCTGTCCAAGTATTGACGTACTGAAGAACTGAAATTCCCTCTCTCCCCCGTTGAGAATGATCCTAAACATTCTCCGACTCCCCCATCAGGATGAGCCGACAACATCGAAATCCACAGTCGCCGACTATCCTCTCGTACACTTCTCCCCTCGACGTCATCAAAATTCCGAACGATAATCAGCGTTGGTGATTCTGAAGTTATAAAAGATTCGAGTCTAACCGACGAGGAGCTCTACAACATCATTCACGCATCACCATGCATCSCTCGAAAACCATCTACAGTATCCTCAACGGATTCTGGATATCTTGGGTCGTCTGGAGCCAGCTCGTCGTGTGTCAGAAGTCGTGAAGGATCGACAGTATCCTCAACGATTACGGTAGATCGGACTAGACGTGGTGGATCGACGACGTCTACTGAGAATTCAGAAGCAGAGTCCGAGAGTAGTTATTCGAGTTTTGCTTCGATCGCATCGACGGCTTCAAAATATTTGGGACGCGCTGCGGATTGTTTGGTCTTGATGACGAAAAGAAATGGATGGAGTGATGGTAATTATAGATTGATTTACAGAGAAACATTTTCAAACTTCCAGAGGGTTTTCACATGTTTTAAAAAATTCAAAAATTCAAAAAATTTAATTGCTCAATTCAAAATCTTCCATTTTCAGCGGGCTCACCAGCCGATGAAAAGTCATCAGGATCACTGGATGCTCAATCGTGGACCACTGCAATTCAATCGGCTCTAATGCCAGTGACCCCACAGAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTGATTCTGAAGTTATAAAAGA</pcr_primer_p1>
		<pcr_primer_p2>ACTCTGCTTCTGAATTCTCAGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGGTGATTCTGAAGTTATAAAAGATTCGAGTCTAACCGACGAGGAGCTCTACAACATCATTCACGCATCACCATGCATCGCTCGAAAACCATCTACAGTATCCTCAACGGATTCTGGATATCTTGGGTCGTCTGGAGCCAGCTCGTCGTGTGTCAGAAGTCGTGAAGGATCGACAGTATCCTCAACGATTACGGTAGATCGGACTAGACGTGGTGGATCGACGACGTCTACTGAGAATTCAGAAGCAGAGT</canonical_amplicon>
		<polymorphic_amplicon>TGGTGATTCTGAAGTTATAAAAGATTCGAGTCTAACCGACGAGGAGCTCTACAACATCATTCACGCATCACCATGCATCSCTCGAAAACCATCTACAGTATCCTCAACGGATTCTGGATATCTTGGGTCGTCTGGAGCCAGCTCGTCGTGTGTCAGAAGTCGTGAAGGATCGACAGTATCCTCAACGATTACGGTAGATCGGACTAGACGTGGTGGATCGACGACGTCTACTGAGAATTCAGAAGCAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11396</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>168356</contig_pos>
        <strand>+</strand>
        <context>CCGAGAGTAG[C/T]TATTCGAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTGGATCGACGACGTCTACTGAGAATTCAGAAGCAGAGTCCGAGAGTAG</left_flank>
        <right_flank>TATTCGAGTTTTGCTTCGATCGCATCGACGGCTTCAAAATATTTGGGACG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCTGCCTCTCTCTTCATTCTGTACACTCTCTGATCCTTTCTTCTTCAGAATCCTCTGTCCAAGTATTGACGTACTGAAGAACTGAAATTCCCTCTCTCCCCCGTTGAGAATGATCCTAAACATTCTCCGACTCCCCCATCAGGATGAGCCGACAACATCGAAATCCACAGTCGCCGACTATCCTCTCGTACACTTCTCCCCTCGACGTCATCAAAATTCCGAACGATAATCAGCGTTGGTGATTCTGAAGTTATAAAAGATTCGAGTCTAACCGACGAGGAGCTCTACAACATCATTCACGCATCACCATGCATCGCTCGAAAACCATCTACAGTATCCTCAACGGATTCTGGATATCTTGGGTCGTCTGGAGCCAGCTCGTCGTGTGTCAGAAGTCGTGAAGGATCGACAGTATCCTCAACGATTACGGTAGATCGGACTAGACGTGGTGGATCGACGACGTCTACTGAGAATTCAGAAGCAGAGTCCGAGAGTAGTTATTCGAGTTTTGCTTCGATCGCATCGACGGCTTCAAAATATTTGGGACGCGCTGCGGATTGTTTGGTCTTGATGACGAAAAGAAATGGATGGAGTGATGGTAATTATAGATTGATTTACAGAGAAACATTTTCAAACTTCCAGAGGGTTTTCACATGTTTTAAAAAATTCAAAAATTCAAAAAATTTAATTGCTCAATTCAAAATCTTCCATTTTCAGCGGGCTCACCAGCCGATGAAAAGTCATCAGGATCACTGGATGCTCAATCGTGGACCACTGCAATTCAATCGGCTCTAATGCCAGTGACCCCACAGAGTTCTGTGGTCGGTGGAAAACGAGTCGATAAGCTGAAAGTTCCCACTGAAGGTTCGTTTTTTTTGAATTTATACACTAATCCTATTAGGTATCTACTATTTTGCGAATAGCTACTAAAGTACTCCTTGATTTTCTCAATTTGCAATTTCTTTTGTTTTTTTCCGAAAAAAAACGCCGGTCCTGTT</canonical>
            <polymorphic>TCTCTGCCTCTCTCTTCATTCTGTACACTCTCTGATCCTTTCTTCTTCAGAATCCTCTGTCCAAGTATTGACGTACTGAAGAACTGAAATTCCCTCTCTCCCCCGTTGAGAATGATCCTAAACATTCTCCGACTCCCCCATCAGGATGAGCCGACAACATCGAAATCCACAGTCGCCGACTATCCTCTCGTACACTTCTCCCCTCGACGTCATCAAAATTCCGAACGATAATCAGCGTTGGTGATTCTGAAGTTATAAAAGATTCGAGTCTAACCGACGAGGAGCTCTACAACATCATTCACGCATCACCATGCATCGCTCGAAAACCATCTACAGTATCCTCAACGGATTCTGGATATCTTGGGTCGTCTGGAGCCAGCTCGTCGTGTGTCAGAAGTCGTGAAGGATCGACAGTATCCTCAACGATTACGGTAGATCGGACTAGACGTGGTGGATCGACGACGTCTACTGAGAATTCAGAAGCAGAGTCCGAGAGTAGYTATTCGAGTTTTGCTTCGATCGCATCGACGGCTTCAAAATATTTGGGACGCGCTGCGGATTGTTTGGTCTTGATGACGAAAAGAAATGGATGGAGTGATGGTAATTATAGATTGATTTACAGAGAAACATTTTCAAACTTCCAGAGGGTTTTCACATGTTTTAAAAAATTCAAAAATTCAAAAAATTTAATTGCTCAATTCAAAATCTTCCATTTTCAGCGGGCTCACCAGCCGATGAAAAGTCATCAGGATCACTGGATGCTCAATCGTGGACCACTGCAATTCAATCGGCTCTAATGCCAGTGACCCCACAGAGTTCTGTGGTCGGTGGAAAACGAGTCGATAAGCTGAAAGTTCCCACTGAAGGTTCGTTTTTTTTGAATTTATACACTAATCCTATTAGGTATCTACTATTTTGCGAATAGCTACTAAAGTACTCCTTGATTTTCTCAATTTGCAATTTCTTTTGTTTTTTTCCGAAAAAAAACGCCGGTCCTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATCCTCAACGATTACGGTAG</pcr_primer_p1>
		<pcr_primer_p2>TTAAAACATGTGAAAACCCTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTATCCTCAACGATTACGGTAGATCGGACTAGACGTGGTGGATCGACGACGTCTACTGAGAATTCAGAAGCAGAGTCCGAGAGTAGTTATTCGAGTTTTGCTTCGATCGCATCGACGGCTTCAAAATATTTGGGACGCGCTGCGGATTGTTTGGTCTTGATGACGAAAAGAAATGGATGGAGTGATGGTAATTATAGATTGATTTACAGAGAAACATTTTCAAACTTCCAGAGGGTTTTCACATGTTTTAA</canonical_amplicon>
		<polymorphic_amplicon>GTATCCTCAACGATTACGGTAGATCGGACTAGACGTGGTGGATCGACGACGTCTACTGAGAATTCAGAAGCAGAGTCCGAGAGTAGYTATTCGAGTTTTGCTTCGATCGCATCGACGGCTTCAAAATATTTGGGACGCGCTGCGGATTGTTTGGTCTTGATGACGAAAAGAAATGGATGGAGTGATGGTAATTATAGATTGATTTACAGAGAAACATTTTCAAACTTCCAGAGGGTTTTCACATGTTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11397</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>170650</contig_pos>
        <strand>+</strand>
        <context>ATTTTCCGAA[A/G]ACATGTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGTTTTAATCATAAAATCTGAAACTGCCTGAAAATCTACATTTTCCGAA</left_flank>
        <right_flank>ACATGTTTTTATCAACCAAAAGTTTACTTTTCAGGAATTTCTCAAACTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAAAATGGGCCAAAAATATATATTTTGTCTGAAAAAAAAGAAAAAAACTTGTAAGAATAATTTATTCCAAATTTTAAGATTTCCATAAATGAATTTTGCAGCAAGTGGACCACCCAGGAGTGGTGCATTTCATGCAAATGCTCGAAACGACTGATCGAATTTTCGTTGTGATGGAAAAATTGAAAGGAGACATGCTGGAAATGATACTCTCGTCAGAGAAAGGACGACTCTCCGAGAGGACCACACAATTTTTGGTTGCTCAGATTTTGGAGGCATTGAGGTAAGAAGATTTGGGAACATTCTAGATCATGCTTGAGATACGAAATTGATTCGAAAAAAATAGGTTTGTTGAAAAAAAATCCAAAATTTATCGGCAAAAGATAAAATTCGAATTCTGGAAAACTCTGGATCTCAAAATCTACAAAAATGCCCCGAAATCCAAATTTTCAGTTTTAATCATAAAATCTGAAACTGCCTGAAAATCTACATTTTCCGAAAACATGTTTTTATCAACCAAAAGTTTACTTTTCAGGAATTTCTCAAACTTTTGAAATTCTGATTTTTCTAAACTTTTGATTTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCAACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCATGCCCGATTGCATACATGAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAACTTGGATTTTAGGAATCTGATTTTAGGAATCTATAAAAAGTTCCGGAAAAAAAATGCGATCTAAAAACATCGATTTTTCCAGATACCTGCATCATCAAAACATTGTGCACTGTGACTTGAAGCCCGAGAACATATTGCTCAAC</canonical>
            <polymorphic>TAAAAAATGGGCCAAAAATATATATTTTGTCTGAAAAAAAAGAAAAAAACTTGTAAGAATAATTTATTCCAAATTTTAAGATTTCCATAAATGAATTTTGCAGCAAGTGGACCACCCAGGAGTGGTGCATTTCATGCAAATGCTCGAAACGACTGATCGAATTTTCGTTGTGATGGAAAAATTGAAAGGAGACATGCTGGAAATGATACTCTCGTCAGAGAAAGGACGACTCTCCGAGAGGACCACACAATTTTTGGTTGCTCAGATTTTGGAGGCATTGAGGTAAGAAGATTTGGGAACATTCTAGATCATGCTTGAGATACGAAATTGATTCGAAAAAAATAGGTTTGTTGAAAAAAAATCCAAAATTTATCGGCAAAAGATAAAATTCGAATTCTGGAAAACTCTGGATCTCAAAATCTACAAAAATGCCCCGAAATCCAAATTTTCAGTTTTAATCATAAAATCTGAAACTGCCTGAAAATCTACATTTTCCGAARACATGTTTTTATCAACCAAAAGTTTACTTTTCAGGAATTTCTCAAACTTTTGAAATTCTGATTTTTCTAAACTTTTGATTTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCAACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCATGCCCGATTGCATACATGAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAACTTGGATTTTAGGAATCTGATTTTAGGAATCTATAAAAAGTTCCGGAAAAAAAATGCGATCTAAAAACATCGATTTTTCCAGATACCTGCATCATCAAAACATTGTGCACTGTGACTTGAAGCCCGAGAACATATTGCTCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTTATCGGCAAAAGATAA</pcr_primer_p1>
		<pcr_primer_p2>CCACCTTTAAAAATCAAAAGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>AAAATTTATCGGCAAAAGATAAAATTCGAATTCTGGAAAACTCTGGATCTCAAAATCTACAAAAATGCCCCGAAATCCAAATTTTCAGTTTTAATCATAAAATCTGAAACTGCCTGAAAATCTACATTTTCCGAAAACATGTTTTTATCAACCAAAAGTTTACTTTTCAGGAATTTCTCAAACTTTTGAAATTCTGATTTTTCTAAACTTTTGATTTTTAAAGGTGG</canonical_amplicon>
		<polymorphic_amplicon>AAAATTTATCGGCAAAAGATAAAATTCGAATTCTGGAAAACTCTGGATCTCAAAATCTACAAAAATGCCCCGAAATCCAAATTTTCAGTTTTAATCATAAAATCTGAAACTGCCTGAAAATCTACATTTTCCGAARACATGTTTTTATCAACCAAAAGTTTACTTTTCAGGAATTTCTCAAACTTTTGAAATTCTGATTTTTCTAAACTTTTGATTTTTAAAGGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11398</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>170627</contig_pos>
        <strand>+</strand>
        <context>TCTGAAACTG[C/T]CTGAAAATCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATGCCCCGAAATCCAAATTTTCAGTTTTAATCATAAAATCTGAAACTG</left_flank>
        <right_flank>CTGAAAATCTACATTTTCCGAAAACATGTTTTTATCAACCAAAAGTTTAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGAGGTAAATCTTTGGAATTTTAAAAAATGGGCCAAAAATATATATTTTGTCTGAAAAAAAAGAAAAAAACTTGTAAGAATAATTTATTCCAAATTTTAAGATTTCCATAAATGAATTTTGCAGCAAGTGGACCACCCAGGAGTGGTGCATTTCATGCAAATGCTCGAAACGACTGATCGAATTTTCGTTGTGATGGAAAAATTGAAAGGAGACATGCTGGAAATGATACTCTCGTCAGAGAAAGGACGACTCTCCGAGAGGACCACACAATTTTTGGTTGCTCAGATTTTGGAGGCATTGAGGTAAGAAGATTTGGGAACATTCTAGATCATGCTTGAGATACGAAATTGATTCGAAAAAAATAGGTTTGTTGAAAAAAAATCCAAAATTTATCGGCAAAAGATAAAATTCGAATTCTGGAAAACTCTGGATCTCAAAATCTACAAAAATGCCCCGAAATCCAAATTTTCAGTTTTAATCATAAAATCTGAAACTGCCTGAAAATCTACATTTTCCGAAAACATGTTTTTATCAACCAAAAGTTTACTTTTCAGGAATTTCTCAAACTTTTGAAATTCTGATTTTTCTAAACTTTTGATTTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCAACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCATGCCCGATTGCATACATGAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAACTTGGATTTTAGGAATCTGATTTTAGGAATCTATAAAAAGTTCCGGAAAAAAAATGCGATCTAAAAACATCGATTTTTCCAGATACCTGCATCATCAAAACATTGTGCACTGTGACTTGA</canonical>
            <polymorphic>TTGGAGGTAAATCTTTGGAATTTTAAAAAATGGGCCAAAAATATATATTTTGTCTGAAAAAAAAGAAAAAAACTTGTAAGAATAATTTATTCCAAATTTTAAGATTTCCATAAATGAATTTTGCAGCAAGTGGACCACCCAGGAGTGGTGCATTTCATGCAAATGCTCGAAACGACTGATCGAATTTTCGTTGTGATGGAAAAATTGAAAGGAGACATGCTGGAAATGATACTCTCGTCAGAGAAAGGACGACTCTCCGAGAGGACCACACAATTTTTGGTTGCTCAGATTTTGGAGGCATTGAGGTAAGAAGATTTGGGAACATTCTAGATCATGCTTGAGATACGAAATTGATTCGAAAAAAATAGGTTTGTTGAAAAAAAATCCAAAATTTATCGGCAAAAGATAAAATTCGAATTCTGGAAAACTCTGGATCTCAAAATCTACAAAAATGCCCCGAAATCCAAATTTTCAGTTTTAATCATAAAATCTGAAACTGYCTGAAAATCTACATTTTCCGAAAACATGTTTTTATCAACCAAAAGTTTACTTTTCAGGAATTTCTCAAACTTTTGAAATTCTGATTTTTCTAAACTTTTGATTTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCAACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCATGCCCGATTGCATACATGAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAACTTGGATTTTAGGAATCTGATTTTAGGAATCTATAAAAAGTTCCGGAAAAAAAATGCGATCTAAAAACATCGATTTTTCCAGATACCTGCATCATCAAAACATTGTGCACTGTGACTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATACGAAATTGATTCGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAGAAATTCCTGAAAAGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>AGATACGAAATTGATTCGAAAAAAATAGGTTTGTTGAAAAAAAATCCAAAATTTATCGGCAAAAGATAAAATTCGAATTCTGGAAAACTCTGGATCTCAAAATCTACAAAAATGCCCCGAAATCCAAATTTTCAGTTTTAATCATAAAATCTGAAACTGCCTGAAAATCTACATTTTCCGAAAACATGTTTTTATCAACCAAAAGTTTACTTTTCAGGAATTTCTCAA</canonical_amplicon>
		<polymorphic_amplicon>AGATACGAAATTGATTCGAAAAAAATAGGTTTGTTGAAAAAAAATCCAAAATTTATCGGCAAAAGATAAAATTCGAATTCTGGAAAACTCTGGATCTCAAAATCTACAAAAATGCCCCGAAATCCAAATTTTCAGTTTTAATCATAAAATCTGAAACTGYCTGAAAATCTACATTTTCCGAAAACATGTTTTTATCAACCAAAAGTTTACTTTTCAGGAATTTCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11399</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>170495</contig_pos>
        <strand></strand>
        <context>GAAAAAAATA[G/A]GTTTGTTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGGAACATTCTAGATCATGCTTGAGATACGAAATTGATTCGAAAAAAATA</left_flank>
        <right_flank>GTTTGTTGAAAAAAAATCCAAAATTTATCGGCAAAAGATAAAATTCGAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTCCGGGCAATTCGGAACGGTATACGGTGGAATTCACCGGAGAAATGGACAACACGTGGCAGTGAAGCTGATTGACAAACTGAAATTTCCGCCGAATAAGGAGGATTTGTTGAGAGCCGAAGTGCAAATTTTGGAGGTAAATCTTTGGAATTTTAAAAAATGGGCCAAAAATATATATTTTGTCTGAAAAAAAAGAAAAAAACTTGTAAGAATAATTTATTCCAAATTTTAAGATTTCCATAAATGAATTTTGCAGCAAGTGGACCACCCAGGAGTGGTGCATTTCATGCAAATGCTCGAAACGACTGATCGAATTTTCGTTGTGATGGAAAAATTGAAAGGAGACATGCTGGAAATGATACTCTCGTCAGAGAAAGGACGACTCTCCGAGAGGACCACACAATTTTTGGTTGCTCAGATTTTGGAGGCATTGAGGTAAGAAGATTTGGGAACATTCTAGATCATGCTTGAGATACGAAATTGATTCGAAAAAAATAGGTTTGTTGAAAAAAAATCCAAAATTTATCGGCAAAAGATAAAATTCGAATTCTGGAAAACTCTGGATCTCAAAATCTACAAAAATGCCCCGAAATCCAAATTTTCAGTTTTAATCATAAAATCTGAAACTGCCTGAAAATCTACATTTTCCGAAAACATGTTTTTATCAACCAAAAGTTTACTTTTCAGGAATTTCTCAAACTTTTGAAATTCTGATTTTTCTAAACTTTTGATTTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCAACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCATGCCCGATTGCATACATGAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCC</canonical>
            <polymorphic>GGTTCCGGGCAATTCGGAACGGTATACGGTGGAATTCACCGGAGAAATGGACAACACGTGGCAGTGAAGCTGATTGACAAACTGAAATTTCCGCCGAATAAGGAGGATTTGTTGAGAGCCGAAGTGCAAATTTTGGAGGTAAATCTTTGGAATTTTAAAAAATGGGCCAAAAATATATATTTTGTCTGAAAAAAAAGAAAAAAACTTGTAAGAATAATTTATTCCAAATTTTAAGATTTCCATAAATGAATTTTGCAGCAAGTGGACCACCCAGGAGTGGTGCATTTCATGCAAATGCTCGAAACGACTGATCGAATTTTCGTTGTGATGGAAAAATTGAAAGGAGACATGCTGGAAATGATACTCTCGTCAGAGAAAGGACGACTCTCCGAGAGGACCACACAATTTTTGGTTGCTCAGATTTTGGAGGCATTGAGGTAAGAAGATTTGGGAACATTCTAGATCATGCTTGAGATACGAAATTGATTCGAAAAAAATARGTTTGTTGAAAAAAAATCCAAAATTTATCGGCAAAAGATAAAATTCGAATTCTGGAAAACTCTGGATCTCAAAATCTACAAAAATGCCCCGAAATCCAAATTTTCAGTTTTAATCATAAAATCTGAAACTGCCTGAAAATCTACATTTTCCGAAAACATGTTTTTATCAACCAAAAGTTTACTTTTCAGGAATTTCTCAAACTTTTGAAATTCTGATTTTTCTAAACTTTTGATTTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCAACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCATGCCCGATTGCATACATGAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGACATGCTGGAAATGATACT</pcr_primer_p1>
		<pcr_primer_p2>CATTTTTGTAGATTTTGAGATCC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GAGACATGCTGGAAATGATACTCTCGTCAGAGAAAGGACGACTCTCCGAGAGGACCACACAATTTTTGGTTGCTCAGATTTTGGAGGCATTGAGGTAAGAAGATTTGGGAACATTCTAGATCATGCTTGAGATACGAAATTGATTCGAAAAAAATAGGTTTGTTGAAAAAAAATCCAAAATTTATCGGCAAAAGATAAAATTCGAATTCTGGAAAACTCTGGATCTCAAAATCTACAAAAATG</canonical_amplicon>
		<polymorphic_amplicon>GAGACATGCTGGAAATGATACTCTCGTCAGAGAAAGGACGACTCTCCGAGAGGACCACACAATTTTTGGTTGCTCAGATTTTGGAGGCATTGAGGTAAGAAGATTTGGGAACATTCTAGATCATGCTTGAGATACGAAATTGATTCGAAAAAAATARGTTTGTTGAAAAAAAATCCAAAATTTATCGGCAAAAGATAAAATTCGAATTCTGGAAAACTCTGGATCTCAAAATCTACAAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11400</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>170463</contig_pos>
        <strand>+</strand>
        <context>TCTAGATCAT[G/T]CTTGAGATAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAGATTTTGGAGGCATTGAGGTAAGAAGATTTGGGAACATTCTAGATCAT</left_flank>
        <right_flank>CTTGAGATACGAAATTGATTCGAAAAAAATAGGTTTGTTGAAAAAAAATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTGTACCAAATCTTCGCCGAAGAAGTTTTGGGTTCCGGGCAATTCGGAACGGTATACGGTGGAATTCACCGGAGAAATGGACAACACGTGGCAGTGAAGCTGATTGACAAACTGAAATTTCCGCCGAATAAGGAGGATTTGTTGAGAGCCGAAGTGCAAATTTTGGAGGTAAATCTTTGGAATTTTAAAAAATGGGCCAAAAATATATATTTTGTCTGAAAAAAAAGAAAAAAACTTGTAAGAATAATTTATTCCAAATTTTAAGATTTCCATAAATGAATTTTGCAGCAAGTGGACCACCCAGGAGTGGTGCATTTCATGCAAATGCTCGAAACGACTGATCGAATTTTCGTTGTGATGGAAAAATTGAAAGGAGACATGCTGGAAATGATACTCTCGTCAGAGAAAGGACGACTCTCCGAGAGGACCACACAATTTTTGGTTGCTCAGATTTTGGAGGCATTGAGGTAAGAAGATTTGGGAACATTCTAGATCATGCTTGAGATACGAAATTGATTCGAAAAAAATAGGTTTGTTGAAAAAAAATCCAAAATTTATCGGCAAAAGATAAAATTCGAATTCTGGAAAACTCTGGATCTCAAAATCTACAAAAATGCCCCGAAATCCAAATTTTCAGTTTTAATCATAAAATCTGAAACTGCCTGAAAATCTACATTTTCCGAAAACATGTTTTTATCAACCAAAAGTTTACTTTTCAGGAATTTCTCAAACTTTTGAAATTCTGATTTTTCTAAACTTTTGATTTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCAACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCATGCCCGATTGCATACATGAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAG</canonical>
            <polymorphic>AACTGTACCAAATCTTCGCCGAAGAAGTTTTGGGTTCCGGGCAATTCGGAACGGTATACGGTGGAATTCACCGGAGAAATGGACAACACGTGGCAGTGAAGCTGATTGACAAACTGAAATTTCCGCCGAATAAGGAGGATTTGTTGAGAGCCGAAGTGCAAATTTTGGAGGTAAATCTTTGGAATTTTAAAAAATGGGCCAAAAATATATATTTTGTCTGAAAAAAAAGAAAAAAACTTGTAAGAATAATTTATTCCAAATTTTAAGATTTCCATAAATGAATTTTGCAGCAAGTGGACCACCCAGGAGTGGTGCATTTCATGCAAATGCTCGAAACGACTGATCGAATTTTCGTTGTGATGGAAAAATTGAAAGGAGACATGCTGGAAATGATACTCTCGTCAGAGAAAGGACGACTCTCCGAGAGGACCACACAATTTTTGGTTGCTCAGATTTTGGAGGCATTGAGGTAAGAAGATTTGGGAACATTCTAGATCATKCTTGAGATACGAAATTGATTCGAAAAAAATAGGTTTGTTGAAAAAAAATCCAAAATTTATCGGCAAAAGATAAAATTCGAATTCTGGAAAACTCTGGATCTCAAAATCTACAAAAATGCCCCGAAATCCAAATTTTCAGTTTTAATCATAAAATCTGAAACTGCCTGAAAATCTACATTTTCCGAAAACATGTTTTTATCAACCAAAAGTTTACTTTTCAGGAATTTCTCAAACTTTTGAAATTCTGATTTTTCTAAACTTTTGATTTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCAACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCATGCCCGATTGCATACATGAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>320 192 124 117 95 76 60 16</canonical_bands>
                <polymorphic_bands>320 309 124 95 76 60 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGACATGCTGGAAATGATACT</pcr_primer_p1>
		<pcr_primer_p2>CATTTTTGTAGATTTTGAGATCC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GAGACATGCTGGAAATGATACTCTCGTCAGAGAAAGGACGACTCTCCGAGAGGACCACACAATTTTTGGTTGCTCAGATTTTGGAGGCATTGAGGTAAGAAGATTTGGGAACATTCTAGATCATGCTTGAGATACGAAATTGATTCGAAAAAAATAGGTTTGTTGAAAAAAAATCCAAAATTTATCGGCAAAAGATAAAATTCGAATTCTGGAAAACTCTGGATCTCAAAATCTACAAAAATG</canonical_amplicon>
		<polymorphic_amplicon>GAGACATGCTGGAAATGATACTCTCGTCAGAGAAAGGACGACTCTCCGAGAGGACCACACAATTTTTGGTTGCTCAGATTTTGGAGGCATTGAGGTAAGAAGATTTGGGAACATTCTAGATCATKCTTGAGATACGAAATTGATTCGAAAAAAATAGGTTTGTTGAAAAAAAATCCAAAATTTATCGGCAAAAGATAAAATTCGAATTCTGGAAAACTCTGGATCTCAAAATCTACAAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11401</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>170444</contig_pos>
        <strand>+</strand>
        <context>TAAGAAGATT[A/G/T/C]GGGAACATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G/T/C</alleles>
        <left_flank>CACACAATTTTTGGTTGCTCAGATTTTGGAGGCATTGAGGTAAGAAGATT</left_flank>
        <right_flank>GGGAACATTCTAGATCATGCTTGAGATACGAAATTGATTCGAAAAAAATA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGGAACAAGAGTTCTCCCAACTGTACCAAATCTTCGCCGAAGAAGTTTTGGGTTCCGGGCAATTCGGAACGGTATACGGTGGAATTCACCGGAGAAATGGACAACACGTGGCAGTGAAGCTGATTGACAAACTGAAATTTCCGCCGAATAAGGAGGATTTGTTGAGAGCCGAAGTGCAAATTTTGGAGGTAAATCTTTGGAATTTTAAAAAATGGGCCAAAAATATATATTTTGTCTGAAAAAAAAGAAAAAAACTTGTAAGAATAATTTATTCCAAATTTTAAGATTTCCATAAATGAATTTTGCAGCAAGTGGACCACCCAGGAGTGGTGCATTTCATGCAAATGCTCGAAACGACTGATCGAATTTTCGTTGTGATGGAAAAATTGAAAGGAGACATGCTGGAAATGATACTCTCGTCAGAGAAAGGACGACTCTCCGAGAGGACCACACAATTTTTGGTTGCTCAGATTTTGGAGGCATTGAGGTAAGAAGATTTGGGAACATTCTAGATCATGCTTGAGATACGAAATTGATTCGAAAAAAATAGGTTTGTTGAAAAAAAATCCAAAATTTATCGGCAAAAGATAAAATTCGAATTCTGGAAAACTCTGGATCTCAAAATCTACAAAAATGCCCCGAAATCCAAATTTTCAGTTTTAATCATAAAATCTGAAACTGCCTGAAAATCTACATTTTCCGAAAACATGTTTTTATCAACCAAAAGTTTACTTTTCAGGAATTTCTCAAACTTTTGAAATTCTGATTTTTCTAAACTTTTGATTTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCAACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCATGCCCGATTGCATACATGAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGAC</canonical>
            <polymorphic>ACGGAACAAGAGTTCTCCCAACTGTACCAAATCTTCGCCGAAGAAGTTTTGGGTTCCGGGCAATTCGGAACGGTATACGGTGGAATTCACCGGAGAAATGGACAACACGTGGCAGTGAAGCTGATTGACAAACTGAAATTTCCGCCGAATAAGGAGGATTTGTTGAGAGCCGAAGTGCAAATTTTGGAGGTAAATCTTTGGAATTTTAAAAAATGGGCCAAAAATATATATTTTGTCTGAAAAAAAAGAAAAAAACTTGTAAGAATAATTTATTCCAAATTTTAAGATTTCCATAAATGAATTTTGCAGCAAGTGGACCACCCAGGAGTGGTGCATTTCATGCAAATGCTCGAAACGACTGATCGAATTTTCGTTGTGATGGAAAAATTGAAAGGAGACATGCTGGAAATGATACTCTCGTCAGAGAAAGGACGACTCTCCGAGAGGACCACACAATTTTTGGTTGCTCAGATTTTGGAGGCATTGAGGTAAGAAGATTRGGGAACATTCTAGATCATGCTTGAGATACGAAATTGATTCGAAAAAAATAGGTTTGTTGAAAAAAAATCCAAAATTTATCGGCAAAAGATAAAATTCGAATTCTGGAAAACTCTGGATCTCAAAATCTACAAAAATGCCCCGAAATCCAAATTTTCAGTTTTAATCATAAAATCTGAAACTGCCTGAAAATCTACATTTTCCGAAAACATGTTTTTATCAACCAAAAGTTTACTTTTCAGGAATTTCTCAAACTTTTGAAATTCTGATTTTTCTAAACTTTTGATTTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCAACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCATGCCCGATTGCATACATGAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGACATGCTGGAAATGATACT</pcr_primer_p1>
		<pcr_primer_p2>CATTTTTGTAGATTTTGAGATCC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GAGACATGCTGGAAATGATACTCTCGTCAGAGAAAGGACGACTCTCCGAGAGGACCACACAATTTTTGGTTGCTCAGATTTTGGAGGCATTGAGGTAAGAAGATTTGGGAACATTCTAGATCATGCTTGAGATACGAAATTGATTCGAAAAAAATAGGTTTGTTGAAAAAAAATCCAAAATTTATCGGCAAAAGATAAAATTCGAATTCTGGAAAACTCTGGATCTCAAAATCTACAAAAATG</canonical_amplicon>
		<polymorphic_amplicon>GAGACATGCTGGAAATGATACTCTCGTCAGAGAAAGGACGACTCTCCGAGAGGACCACACAATTTTTGGTTGCTCAGATTTTGGAGGCATTGAGGTAAGAAGATTRGGGAACATTCTAGATCATGCTTGAGATACGAAATTGATTCGAAAAAAATAGGTTTGTTGAAAAAAAATCCAAAATTTATCGGCAAAAGATAAAATTCGAATTCTGGAAAACTCTGGATCTCAAAATCTACAAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11402</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>170332</contig_pos>
        <strand>+</strand>
        <context>GATGGAAAAA[C/T]TGAAAGGAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATGCAAATGCTCGAAACGACTGATCGAATTTTCGTTGTGATGGAAAAA</left_flank>
        <right_flank>TGAAAGGAGACATGCTGGAAATGATACTCTCGTCAGAGAAAGGACGACTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTCAAAATGTTATTTCTGACGCCTTCTGAATTCAGAAGACTCTTAAAATCCACAATCAATTTCATTTTTTAATTTCAGGAGAAACTGGTCATCTCGGTGCAAAAATTCAAACGGAACAAGAGTTCTCCCAACTGTACCAAATCTTCGCCGAAGAAGTTTTGGGTTCCGGGCAATTCGGAACGGTATACGGTGGAATTCACCGGAGAAATGGACAACACGTGGCAGTGAAGCTGATTGACAAACTGAAATTTCCGCCGAATAAGGAGGATTTGTTGAGAGCCGAAGTGCAAATTTTGGAGGTAAATCTTTGGAATTTTAAAAAATGGGCCAAAAATATATATTTTGTCTGAAAAAAAAGAAAAAAACTTGTAAGAATAATTTATTCCAAATTTTAAGATTTCCATAAATGAATTTTGCAGCAAGTGGACCACCCAGGAGTGGTGCATTTCATGCAAATGCTCGAAACGACTGATCGAATTTTCGTTGTGATGGAAAAATTGAAAGGAGACATGCTGGAAATGATACTCTCGTCAGAGAAAGGACGACTCTCCGAGAGGACCACACAATTTTTGGTTGCTCAGATTTTGGAGGCATTGAGGTAAGAAGATTTGGGAACATTCTAGATCATGCTTGAGATACGAAATTGATTCGAAAAAAATAGGTTTGTTGAAAAAAAATCCAAAATTTATCGGCAAAAGATAAAATTCGAATTCTGGAAAACTCTGGATCTCAAAATCTACAAAAATGCCCCGAAATCCAAATTTTCAGTTTTAATCATAAAATCTGAAACTGCCTGAAAATCTACATTTTCCGAAAACATGTTTTTATCAACCAAAAGTTTACTTTTCAGGAATTTCTCAAACTTTTGAAATTCTGATTTTTCTAAACTTTTGATTTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGC</canonical>
            <polymorphic>ATCTCAAAATGTTATTTCTGACGCCTTCTGAATTCAGAAGACTCTTAAAATCCACAATCAATTTCATTTTTTAATTTCAGGAGAAACTGGTCATCTCGGTGCAAAAATTCAAACGGAACAAGAGTTCTCCCAACTGTACCAAATCTTCGCCGAAGAAGTTTTGGGTTCCGGGCAATTCGGAACGGTATACGGTGGAATTCACCGGAGAAATGGACAACACGTGGCAGTGAAGCTGATTGACAAACTGAAATTTCCGCCGAATAAGGAGGATTTGTTGAGAGCCGAAGTGCAAATTTTGGAGGTAAATCTTTGGAATTTTAAAAAATGGGCCAAAAATATATATTTTGTCTGAAAAAAAAGAAAAAAACTTGTAAGAATAATTTATTCCAAATTTTAAGATTTCCATAAATGAATTTTGCAGCAAGTGGACCACCCAGGAGTGGTGCATTTCATGCAAATGCTCGAAACGACTGATCGAATTTTCGTTGTGATGGAAAAAYTGAAAGGAGACATGCTGGAAATGATACTCTCGTCAGAGAAAGGACGACTCTCCGAGAGGACCACACAATTTTTGGTTGCTCAGATTTTGGAGGCATTGAGGTAAGAAGATTTGGGAACATTCTAGATCATGCTTGAGATACGAAATTGATTCGAAAAAAATAGGTTTGTTGAAAAAAAATCCAAAATTTATCGGCAAAAGATAAAATTCGAATTCTGGAAAACTCTGGATCTCAAAATCTACAAAAATGCCCCGAAATCCAAATTTTCAGTTTTAATCATAAAATCTGAAACTGCCTGAAAATCTACATTTTCCGAAAACATGTTTTTATCAACCAAAAGTTTACTTTTCAGGAATTTCTCAAACTTTTGAAATTCTGATTTTTCTAAACTTTTGATTTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>92 77 69 68 66 66 65 63 53 51 43 41 33 30 29 22 22 22 20 20 18 13 11 6</canonical_bands>
                <polymorphic_bands>92 89 77 68 66 66 65 63 53 51 43 41 33 30 29 22 22 22 20 18 13 11 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAATGAATTTTGCAGCAAGT</pcr_primer_p1>
		<pcr_primer_p2>CGAATCAATTTCGTATCTCAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATAAATGAATTTTGCAGCAAGTGGACCACCCAGGAGTGGTGCATTTCATGCAAATGCTCGAAACGACTGATCGAATTTTCGTTGTGATGGAAAAATTGAAAGGAGACATGCTGGAAATGATACTCTCGTCAGAGAAAGGACGACTCTCCGAGAGGACCACACAATTTTTGGTTGCTCAGATTTTGGAGGCATTGAGGTAAGAAGATTTGGGAACATTCTAGATCATGCTTGAGATACGAAATTGATTCG</canonical_amplicon>
		<polymorphic_amplicon>ATAAATGAATTTTGCAGCAAGTGGACCACCCAGGAGTGGTGCATTTCATGCAAATGCTCGAAACGACTGATCGAATTTTCGTTGTGATGGAAAAAYTGAAAGGAGACATGCTGGAAATGATACTCTCGTCAGAGAAAGGACGACTCTCCGAGAGGACCACACAATTTTTGGTTGCTCAGATTTTGGAGGCATTGAGGTAAGAAGATTTGGGAACATTCTAGATCATGCTTGAGATACGAAATTGATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11403</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>170124</contig_pos>
        <strand>+</strand>
        <context>CCGAAGTGCA[A/G]ATTTTGGAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACTGAAATTTCCGCCGAATAAGGAGGATTTGTTGAGAGCCGAAGTGCA</left_flank>
        <right_flank>ATTTTGGAGGTAAATCTTTGGAATTTTAAAAAATGGGCCAAAAATATATA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATAATCTAATCAAAATTAGAATTTTTCTGAATTTTGCAGTTTTATGAAAGTTGGACGTCTTCTGAATTGTAGAATCTAAAAATTGTAGAATCTAAAAATTGTAGAATCTAAAATTCGGACGACATCTGAAATGTTCAAAATATGGATTTTGTTAATTTTGAAAAAAAAAAATTTTTTTTGAACTTAAAAATTTTTCTTAACACCAAATCTCAAAATGTTATTTCTGACGCCTTCTGAATTCAGAAGACTCTTAAAATCCACAATCAATTTCATTTTTTAATTTCAGGAGAAACTGGTCATCTCGGTGCAAAAATTCAAACGGAACAAGAGTTCTCCCAACTGTACCAAATCTTCGCCGAAGAAGTTTTGGGTTCCGGGCAATTCGGAACGGTATACGGTGGAATTCACCGGAGAAATGGACAACACGTGGCAGTGAAGCTGATTGACAAACTGAAATTTCCGCCGAATAAGGAGGATTTGTTGAGAGCCGAAGTGCAAATTTTGGAGGTAAATCTTTGGAATTTTAAAAAATGGGCCAAAAATATATATTTTGTCTGAAAAAAAAGAAAAAAACTTGTAAGAATAATTTATTCCAAATTTTAAGATTTCCATAAATGAATTTTGCAGCAAGTGGACCACCCAGGAGTGGTGCATTTCATGCAAATGCTCGAAACGACTGATCGAATTTTCGTTGTGATGGAAAAATTGAAAGGAGACATGCTGGAAATGATACTCTCGTCAGAGAAAGGACGACTCTCCGAGAGGACCACACAATTTTTGGTTGCTCAGATTTTGGAGGCATTGAGGTAAGAAGATTTGGGAACATTCTAGATCATGCTTGAGATACGAAATTGATTCGAAAAAAATAGGTTTGTTGAAAAAAAATCCAAAATTTATCGGCAAAAGATAAAATTCGAATTCTGGAAAACTCTGGATCTCAAAATCTACAAAAATGCCCCGAAATCCAAATTTTCAGTTTTAATCATAAAATCTGAAAC</canonical>
            <polymorphic>CTATAATCTAATCAAAATTAGAATTTTTCTGAATTTTGCAGTTTTATGAAAGTTGGACGTCTTCTGAATTGTAGAATCTAAAAATTGTAGAATCTAAAAATTGTAGAATCTAAAATTCGGACGACATCTGAAATGTTCAAAATATGGATTTTGTTAATTTTGAAAAAAAAAAATTTTTTTTGAACTTAAAAATTTTTCTTAACACCAAATCTCAAAATGTTATTTCTGACGCCTTCTGAATTCAGAAGACTCTTAAAATCCACAATCAATTTCATTTTTTAATTTCAGGAGAAACTGGTCATCTCGGTGCAAAAATTCAAACGGAACAAGAGTTCTCCCAACTGTACCAAATCTTCGCCGAAGAAGTTTTGGGTTCCGGGCAATTCGGAACGGTATACGGTGGAATTCACCGGAGAAATGGACAACACGTGGCAGTGAAGCTGATTGACAAACTGAAATTTCCGCCGAATAAGGAGGATTTGTTGAGAGCCGAAGTGCARATTTTGGAGGTAAATCTTTGGAATTTTAAAAAATGGGCCAAAAATATATATTTTGTCTGAAAAAAAAGAAAAAAACTTGTAAGAATAATTTATTCCAAATTTTAAGATTTCCATAAATGAATTTTGCAGCAAGTGGACCACCCAGGAGTGGTGCATTTCATGCAAATGCTCGAAACGACTGATCGAATTTTCGTTGTGATGGAAAAATTGAAAGGAGACATGCTGGAAATGATACTCTCGTCAGAGAAAGGACGACTCTCCGAGAGGACCACACAATTTTTGGTTGCTCAGATTTTGGAGGCATTGAGGTAAGAAGATTTGGGAACATTCTAGATCATGCTTGAGATACGAAATTGATTCGAAAAAAATAGGTTTGTTGAAAAAAAATCCAAAATTTATCGGCAAAAGATAAAATTCGAATTCTGGAAAACTCTGGATCTCAAAATCTACAAAAATGCCCCGAAATCCAAATTTTCAGTTTTAATCATAAAATCTGAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>207 90 82 76 75 66 58 53 51 48 43 31 22 22 21 20 19 10 6</canonical_bands>
                <polymorphic_bands>207 90 82 76 75 66 65 58 53 51 48 31 22 21 20 19 10 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>77 69 68 66 65 53 51 48 43 42 41 35 33 31 29 22 22 22 20 20 19 16 16 16 15 15 13 11 10 6 6</canonical_bands>
                <polymorphic_bands>77 69 68 66 65 65 53 51 48 42 41 35 33 31 29 22 22 20 20 19 16 16 16 15 15 13 11 10 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCTGATTGACAAACTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCGATCAGTCGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AAGCTGATTGACAAACTGAAATTTCCGCCGAATAAGGAGGATTTGTTGAGAGCCGAAGTGCAAATTTTGGAGGTAAATCTTTGGAATTTTAAAAAATGGGCCAAAAATATATATTTTGTCTGAAAAAAAAGAAAAAAACTTGTAAGAATAATTTATTCCAAATTTTAAGATTTCCATAAATGAATTTTGCAGCAAGTGGACCACCCAGGAGTGGTGCATTTCATGCAAATGCTCGAAACGACTGATCGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>AAGCTGATTGACAAACTGAAATTTCCGCCGAATAAGGAGGATTTGTTGAGAGCCGAAGTGCARATTTTGGAGGTAAATCTTTGGAATTTTAAAAAATGGGCCAAAAATATATATTTTGTCTGAAAAAAAAGAAAAAAACTTGTAAGAATAATTTATTCCAAATTTTAAGATTTCCATAAATGAATTTTGCAGCAAGTGGACCACCCAGGAGTGGTGCATTTCATGCAAATGCTCGAAACGACTGATCGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11404</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>171993</contig_pos>
        <strand>+</strand>
        <context>GAAAAATTCT[A/G]AATTTTTCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAATATTTCATTTTGAATGTTGGCAAACTTTTAGTTCTTGAAAAATTCT</left_flank>
        <right_flank>AATTTTTCCAGCTATCGAATTCATCAACGGACTGCTTCAAGTGAAGATGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAAAAAGTTTAAAATTATGAAAATTTTGAAAAAATACCAAAAAATAAAAAATTTTGACAAAAGAGACAACAATTTTTTATTTCAAGAATCCTATTAAAATTGCTGGAAATTCAATTTTTTAATTTTGGGAGTTTCCAGGTTCTCCGAAACAAAGGATTCAATCGTTCGCTGGATATGTGGAGTGTTGGTGTGATTGTCTATGTTTCCCTGTCCGGAACATTCCCATTCAATGAAGACGAAGATATTAATGATCAAATACAAAATGCCGAATTCATGTACCCACCGTCACCGTGGAAAGAGATTTCGGAGAATGGTAAGTGGAGTGGCGGGAGTTCGAAAAGTTTTGAAAATTTTAATTATACCGAATTTTTAAATTTTTGAGCATTTTTTGAAAATTTGAATTTTCGAATTTCAAATTTTTGTAATTTTGGATTTCTTAAAGTTTTCGAAATATTTCATTTTGAATGTTGGCAAACTTTTAGTTCTTGAAAAATTCTAAATTTTTCCAGCTATCGAATTCATCAACGGACTGCTTCAAGTGAAGATGAGCAAGCGGTATACGGTAGCGAAGGCGCAGTCGCATATCTGGATGCAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCTGGTCGGACCTTCGAGTGTTGGAAAAAGCAGTTGGTCAACGTTTCGTCACTCACGAATCGGATGATTCCAGATGGCATGCCTATGAAAAAGAACACAACGTCACACCGGTCTATGTCTGAAATTTTTTGTCCCTTGAAAAAAATTTCTAGATTTCTA</canonical>
            <polymorphic>TTTAAAAAGTTTAAAATTATGAAAATTTTGAAAAAATACCAAAAAATAAAAAATTTTGACAAAAGAGACAACAATTTTTTATTTCAAGAATCCTATTAAAATTGCTGGAAATTCAATTTTTTAATTTTGGGAGTTTCCAGGTTCTCCGAAACAAAGGATTCAATCGTTCGCTGGATATGTGGAGTGTTGGTGTGATTGTCTATGTTTCCCTGTCCGGAACATTCCCATTCAATGAAGACGAAGATATTAATGATCAAATACAAAATGCCGAATTCATGTACCCACCGTCACCGTGGAAAGAGATTTCGGAGAATGGTAAGTGGAGTGGCGGGAGTTCGAAAAGTTTTGAAAATTTTAATTATACCGAATTTTTAAATTTTTGAGCATTTTTTGAAAATTTGAATTTTCGAATTTCAAATTTTTGTAATTTTGGATTTCTTAAAGTTTTCGAAATATTTCATTTTGAATGTTGGCAAACTTTTAGTTCTTGAAAAATTCTRAATTTTTCCAGCTATCGAATTCATCAACGGACTGCTTCAAGTGAAGATGAGCAAGCGGTATACGGTAGCGAAGGCGCAGTCGCATATCTGGATGCAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCTGGTCGGACCTTCGAGTGTTGGAAAAAGCAGTTGGTCAACGTTTCGTCACTCACGAATCGGATGATTCCAGATGGCATGCCTATGAAAAAGAACACAACGTCACACCGGTCTATGTCTGAAATTTTTTGTCCCTTGAAAAAAATTTCTAGATTTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>165 161 94 80 77 68 58 49 34 28 28 23 21 21 17 16 16 8 8 8 7 7 6</canonical_bands>
                <polymorphic_bands>165 161 94 80 77 68 58 49 34 28 28 24 23 21 21 16 16 8 8 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTTGGATTTCTTAAAGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CCAGTTATTTTAAATCTTTTTGATT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATTTTGGATTTCTTAAAGTTTTCGAAATATTTCATTTTGAATGTTGGCAAACTTTTAGTTCTTGAAAAATTCTAAATTTTTCCAGCTATCGAATTCATCAACGGACTGCTTCAAGTGAAGATGAGCAAGCGGTATACGGTAGCGAAGGCGCAGTCGCATATCTGGATGCAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGG</canonical_amplicon>
		<polymorphic_amplicon>AATTTTGGATTTCTTAAAGTTTTCGAAATATTTCATTTTGAATGTTGGCAAACTTTTAGTTCTTGAAAAATTCTRAATTTTTCCAGCTATCGAATTCATCAACGGACTGCTTCAAGTGAAGATGAGCAAGCGGTATACGGTAGCGAAGGCGCAGTCGCATATCTGGATGCAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11405</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>172112</contig_pos>
        <strand>+</strand>
        <context>CAAAATTCAA[C/G]ATTTTTAGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGAAGGCGCAGTCGCATATCTGGATGCAGGTACAGTAATCCAAAATTCAA</left_flank>
        <right_flank>ATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAATTTTGGGAGTTTCCAGGTTCTCCGAAACAAAGGATTCAATCGTTCGCTGGATATGTGGAGTGTTGGTGTGATTGTCTATGTTTCCCTGTCCGGAACATTCCCATTCAATGAAGACGAAGATATTAATGATCAAATACAAAATGCCGAATTCATGTACCCACCGTCACCGTGGAAAGAGATTTCGGAGAATGGTAAGTGGAGTGGCGGGAGTTCGAAAAGTTTTGAAAATTTTAATTATACCGAATTTTTAAATTTTTGAGCATTTTTTGAAAATTTGAATTTTCGAATTTCAAATTTTTGTAATTTTGGATTTCTTAAAGTTTTCGAAATATTTCATTTTGAATGTTGGCAAACTTTTAGTTCTTGAAAAATTCTAAATTTTTCCAGCTATCGAATTCATCAACGGACTGCTTCAAGTGAAGATGAGCAAGCGGTATACGGTAGCGAAGGCGCAGTCGCATATCTGGATGCAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCTGGTCGGACCTTCGAGTGTTGGAAAAAGCAGTTGGTCAACGTTTCGTCACTCACGAATCGGATGATTCCAGATGGCATGCCTATGAAAAAGAACACAACGTCACACCGGTCTATGTCTGAAATTTTTTGTCCCTTGAAAAAAATTTCTAGATTTCTAATTTTTCTCTGAAAATTCCCATTTTTTCATCTCATCTCATCCATGTTTTCACACTCTTTATTGCATCTTCCTGCCACATATCGTCTTTTTTTTCTTGGAAAAATTTTAATTTCCCAGTT</canonical>
            <polymorphic>TTTAATTTTGGGAGTTTCCAGGTTCTCCGAAACAAAGGATTCAATCGTTCGCTGGATATGTGGAGTGTTGGTGTGATTGTCTATGTTTCCCTGTCCGGAACATTCCCATTCAATGAAGACGAAGATATTAATGATCAAATACAAAATGCCGAATTCATGTACCCACCGTCACCGTGGAAAGAGATTTCGGAGAATGGTAAGTGGAGTGGCGGGAGTTCGAAAAGTTTTGAAAATTTTAATTATACCGAATTTTTAAATTTTTGAGCATTTTTTGAAAATTTGAATTTTCGAATTTCAAATTTTTGTAATTTTGGATTTCTTAAAGTTTTCGAAATATTTCATTTTGAATGTTGGCAAACTTTTAGTTCTTGAAAAATTCTAAATTTTTCCAGCTATCGAATTCATCAACGGACTGCTTCAAGTGAAGATGAGCAAGCGGTATACGGTAGCGAAGGCGCAGTCGCATATCTGGATGCAGGTACAGTAATCCAAAATTCAASATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCTGGTCGGACCTTCGAGTGTTGGAAAAAGCAGTTGGTCAACGTTTCGTCACTCACGAATCGGATGATTCCAGATGGCATGCCTATGAAAAAGAACACAACGTCACACCGGTCTATGTCTGAAATTTTTTGTCCCTTGAAAAAAATTTCTAGATTTCTAATTTTTCTCTGAAAATTCCCATTTTTTCATCTCATCTCATCCATGTTTTCACACTCTTTATTGCATCTTCCTGCCACATATCGTCTTTTTTTTCTTGGAAAAATTTTAATTTCCCAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>273 212 129 101 95 79 67 28 16</canonical_bands>
                <polymorphic_bands>273 240 129 101 95 79 67 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGTTGGCAAACTTTTAGTTC</pcr_primer_p1>
		<pcr_primer_p2>GGTTACGGTAGTTTTTGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AATGTTGGCAAACTTTTAGTTCTTGAAAAATTCTAAATTTTTCCAGCTATCGAATTCATCAACGGACTGCTTCAAGTGAAGATGAGCAAGCGGTATACGGTAGCGAAGGCGCAGTCGCATATCTGGATGCAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACC</canonical_amplicon>
		<polymorphic_amplicon>AATGTTGGCAAACTTTTAGTTCTTGAAAAATTCTAAATTTTTCCAGCTATCGAATTCATCAACGGACTGCTTCAAGTGAAGATGAGCAAGCGGTATACGGTAGCGAAGGCGCAGTCGCATATCTGGATGCAGGTACAGTAATCCAAAATTCAASATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11406</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>172135</contig_pos>
        <strand>+</strand>
        <context>CGAAAATTAT[C/T]CTAATTTCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGCAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTAT</left_flank>
        <right_flank>CTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCCGAAACAAAGGATTCAATCGTTCGCTGGATATGTGGAGTGTTGGTGTGATTGTCTATGTTTCCCTGTCCGGAACATTCCCATTCAATGAAGACGAAGATATTAATGATCAAATACAAAATGCCGAATTCATGTACCCACCGTCACCGTGGAAAGAGATTTCGGAGAATGGTAAGTGGAGTGGCGGGAGTTCGAAAAGTTTTGAAAATTTTAATTATACCGAATTTTTAAATTTTTGAGCATTTTTTGAAAATTTGAATTTTCGAATTTCAAATTTTTGTAATTTTGGATTTCTTAAAGTTTTCGAAATATTTCATTTTGAATGTTGGCAAACTTTTAGTTCTTGAAAAATTCTAAATTTTTCCAGCTATCGAATTCATCAACGGACTGCTTCAAGTGAAGATGAGCAAGCGGTATACGGTAGCGAAGGCGCAGTCGCATATCTGGATGCAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCTGGTCGGACCTTCGAGTGTTGGAAAAAGCAGTTGGTCAACGTTTCGTCACTCACGAATCGGATGATTCCAGATGGCATGCCTATGAAAAAGAACACAACGTCACACCGGTCTATGTCTGAAATTTTTTGTCCCTTGAAAAAAATTTCTAGATTTCTAATTTTTCTCTGAAAATTCCCATTTTTTCATCTCATCTCATCCATGTTTTCACACTCTTTATTGCATCTTCCTGCCACATATCGTCTTTTTTTTCTTGGAAAAATTTTAATTTCCCAGTTTTTTCCTTTATTTTTAACGCAAA</canonical>
            <polymorphic>TCTCCGAAACAAAGGATTCAATCGTTCGCTGGATATGTGGAGTGTTGGTGTGATTGTCTATGTTTCCCTGTCCGGAACATTCCCATTCAATGAAGACGAAGATATTAATGATCAAATACAAAATGCCGAATTCATGTACCCACCGTCACCGTGGAAAGAGATTTCGGAGAATGGTAAGTGGAGTGGCGGGAGTTCGAAAAGTTTTGAAAATTTTAATTATACCGAATTTTTAAATTTTTGAGCATTTTTTGAAAATTTGAATTTTCGAATTTCAAATTTTTGTAATTTTGGATTTCTTAAAGTTTTCGAAATATTTCATTTTGAATGTTGGCAAACTTTTAGTTCTTGAAAAATTCTAAATTTTTCCAGCTATCGAATTCATCAACGGACTGCTTCAAGTGAAGATGAGCAAGCGGTATACGGTAGCGAAGGCGCAGTCGCATATCTGGATGCAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATYCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCTGGTCGGACCTTCGAGTGTTGGAAAAAGCAGTTGGTCAACGTTTCGTCACTCACGAATCGGATGATTCCAGATGGCATGCCTATGAAAAAGAACACAACGTCACACCGGTCTATGTCTGAAATTTTTTGTCCCTTGAAAAAAATTTCTAGATTTCTAATTTTTCTCTGAAAATTCCCATTTTTTCATCTCATCTCATCCATGTTTTCACACTCTTTATTGCATCTTCCTGCCACATATCGTCTTTTTTTTCTTGGAAAAATTTTAATTTCCCAGTTTTTTCCTTTATTTTTAACGCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTTGGCAAACTTTTAGTTC</pcr_primer_p1>
		<pcr_primer_p2>GGTTACGGTAGTTTTTGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AATGTTGGCAAACTTTTAGTTCTTGAAAAATTCTAAATTTTTCCAGCTATCGAATTCATCAACGGACTGCTTCAAGTGAAGATGAGCAAGCGGTATACGGTAGCGAAGGCGCAGTCGCATATCTGGATGCAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACC</canonical_amplicon>
		<polymorphic_amplicon>AATGTTGGCAAACTTTTAGTTCTTGAAAAATTCTAAATTTTTCCAGCTATCGAATTCATCAACGGACTGCTTCAAGTGAAGATGAGCAAGCGGTATACGGTAGCGAAGGCGCAGTCGCATATCTGGATGCAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATYCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11407</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>172178</contig_pos>
        <strand>+</strand>
        <context>GGTAGAATTC[C/G]CAGAACAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTC</left_flank>
        <right_flank>CAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGGTGTGATTGTCTATGTTTCCCTGTCCGGAACATTCCCATTCAATGAAGACGAAGATATTAATGATCAAATACAAAATGCCGAATTCATGTACCCACCGTCACCGTGGAAAGAGATTTCGGAGAATGGTAAGTGGAGTGGCGGGAGTTCGAAAAGTTTTGAAAATTTTAATTATACCGAATTTTTAAATTTTTGAGCATTTTTTGAAAATTTGAATTTTCGAATTTCAAATTTTTGTAATTTTGGATTTCTTAAAGTTTTCGAAATATTTCATTTTGAATGTTGGCAAACTTTTAGTTCTTGAAAAATTCTAAATTTTTCCAGCTATCGAATTCATCAACGGACTGCTTCAAGTGAAGATGAGCAAGCGGTATACGGTAGCGAAGGCGCAGTCGCATATCTGGATGCAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCTGGTCGGACCTTCGAGTGTTGGAAAAAGCAGTTGGTCAACGTTTCGTCACTCACGAATCGGATGATTCCAGATGGCATGCCTATGAAAAAGAACACAACGTCACACCGGTCTATGTCTGAAATTTTTTGTCCCTTGAAAAAAATTTCTAGATTTCTAATTTTTCTCTGAAAATTCCCATTTTTTCATCTCATCTCATCCATGTTTTCACACTCTTTATTGCATCTTCCTGCCACATATCGTCTTTTTTTTCTTGGAAAAATTTTAATTTCCCAGTTTTTTCCTTTATTTTTAACGCAAATCTCTTCTTTTTTTTCTCTGAAAATTCCCGTTTTTCCTAGTCA</canonical>
            <polymorphic>GTTGGTGTGATTGTCTATGTTTCCCTGTCCGGAACATTCCCATTCAATGAAGACGAAGATATTAATGATCAAATACAAAATGCCGAATTCATGTACCCACCGTCACCGTGGAAAGAGATTTCGGAGAATGGTAAGTGGAGTGGCGGGAGTTCGAAAAGTTTTGAAAATTTTAATTATACCGAATTTTTAAATTTTTGAGCATTTTTTGAAAATTTGAATTTTCGAATTTCAAATTTTTGTAATTTTGGATTTCTTAAAGTTTTCGAAATATTTCATTTTGAATGTTGGCAAACTTTTAGTTCTTGAAAAATTCTAAATTTTTCCAGCTATCGAATTCATCAACGGACTGCTTCAAGTGAAGATGAGCAAGCGGTATACGGTAGCGAAGGCGCAGTCGCATATCTGGATGCAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCSCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCTGGTCGGACCTTCGAGTGTTGGAAAAAGCAGTTGGTCAACGTTTCGTCACTCACGAATCGGATGATTCCAGATGGCATGCCTATGAAAAAGAACACAACGTCACACCGGTCTATGTCTGAAATTTTTTGTCCCTTGAAAAAAATTTCTAGATTTCTAATTTTTCTCTGAAAATTCCCATTTTTTCATCTCATCTCATCCATGTTTTCACACTCTTTATTGCATCTTCCTGCCACATATCGTCTTTTTTTTCTTGGAAAAATTTTAATTTCCCAGTTTTTTCCTTTATTTTTAACGCAAATCTCTTCTTTTTTTTCTCTGAAAATTCCCGTTTTTCCTAGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGTACAGTAATCCAAAATTCA</pcr_primer_p1>
		<pcr_primer_p2>AGATGGTGTAGTTCTGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCT</canonical_amplicon>
		<polymorphic_amplicon>CAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCSCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11408</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>172201</contig_pos>
        <strand>+</strand>
        <context>TACCGTAACC[C/T]AACTTTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACC</left_flank>
        <right_flank>AACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGTCCGGAACATTCCCATTCAATGAAGACGAAGATATTAATGATCAAATACAAAATGCCGAATTCATGTACCCACCGTCACCGTGGAAAGAGATTTCGGAGAATGGTAAGTGGAGTGGCGGGAGTTCGAAAAGTTTTGAAAATTTTAATTATACCGAATTTTTAAATTTTTGAGCATTTTTTGAAAATTTGAATTTTCGAATTTCAAATTTTTGTAATTTTGGATTTCTTAAAGTTTTCGAAATATTTCATTTTGAATGTTGGCAAACTTTTAGTTCTTGAAAAATTCTAAATTTTTCCAGCTATCGAATTCATCAACGGACTGCTTCAAGTGAAGATGAGCAAGCGGTATACGGTAGCGAAGGCGCAGTCGCATATCTGGATGCAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCTGGTCGGACCTTCGAGTGTTGGAAAAAGCAGTTGGTCAACGTTTCGTCACTCACGAATCGGATGATTCCAGATGGCATGCCTATGAAAAAGAACACAACGTCACACCGGTCTATGTCTGAAATTTTTTGTCCCTTGAAAAAAATTTCTAGATTTCTAATTTTTCTCTGAAAATTCCCATTTTTTCATCTCATCTCATCCATGTTTTCACACTCTTTATTGCATCTTCCTGCCACATATCGTCTTTTTTTTCTTGGAAAAATTTTAATTTCCCAGTTTTTTCCTTTATTTTTAACGCAAATCTCTTCTTTTTTTTCTCTGAAAATTCCCGTTTTTCCTAGTCAGAAATATCTAGTTTCATCCCGTT</canonical>
            <polymorphic>CCTGTCCGGAACATTCCCATTCAATGAAGACGAAGATATTAATGATCAAATACAAAATGCCGAATTCATGTACCCACCGTCACCGTGGAAAGAGATTTCGGAGAATGGTAAGTGGAGTGGCGGGAGTTCGAAAAGTTTTGAAAATTTTAATTATACCGAATTTTTAAATTTTTGAGCATTTTTTGAAAATTTGAATTTTCGAATTTCAAATTTTTGTAATTTTGGATTTCTTAAAGTTTTCGAAATATTTCATTTTGAATGTTGGCAAACTTTTAGTTCTTGAAAAATTCTAAATTTTTCCAGCTATCGAATTCATCAACGGACTGCTTCAAGTGAAGATGAGCAAGCGGTATACGGTAGCGAAGGCGCAGTCGCATATCTGGATGCAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCYAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCTGGTCGGACCTTCGAGTGTTGGAAAAAGCAGTTGGTCAACGTTTCGTCACTCACGAATCGGATGATTCCAGATGGCATGCCTATGAAAAAGAACACAACGTCACACCGGTCTATGTCTGAAATTTTTTGTCCCTTGAAAAAAATTTCTAGATTTCTAATTTTTCTCTGAAAATTCCCATTTTTTCATCTCATCTCATCCATGTTTTCACACTCTTTATTGCATCTTCCTGCCACATATCGTCTTTTTTTTCTTGGAAAAATTTTAATTTCCCAGTTTTTTCCTTTATTTTTAACGCAAATCTCTTCTTTTTTTTCTCTGAAAATTCCCGTTTTTCCTAGTCAGAAATATCTAGTTTCATCCCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGTACAGTAATCCAAAATTCA</pcr_primer_p1>
		<pcr_primer_p2>AGATGGTGTAGTTCTGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCT</canonical_amplicon>
		<polymorphic_amplicon>CAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCYAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11409</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>172235</contig_pos>
        <strand>+</strand>
        <context>TTGTAAAAGT[C/G]TATGTATATC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGT</left_flank>
        <right_flank>TATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATATTAATGATCAAATACAAAATGCCGAATTCATGTACCCACCGTCACCGTGGAAAGAGATTTCGGAGAATGGTAAGTGGAGTGGCGGGAGTTCGAAAAGTTTTGAAAATTTTAATTATACCGAATTTTTAAATTTTTGAGCATTTTTTGAAAATTTGAATTTTCGAATTTCAAATTTTTGTAATTTTGGATTTCTTAAAGTTTTCGAAATATTTCATTTTGAATGTTGGCAAACTTTTAGTTCTTGAAAAATTCTAAATTTTTCCAGCTATCGAATTCATCAACGGACTGCTTCAAGTGAAGATGAGCAAGCGGTATACGGTAGCGAAGGCGCAGTCGCATATCTGGATGCAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCTGGTCGGACCTTCGAGTGTTGGAAAAAGCAGTTGGTCAACGTTTCGTCACTCACGAATCGGATGATTCCAGATGGCATGCCTATGAAAAAGAACACAACGTCACACCGGTCTATGTCTGAAATTTTTTGTCCCTTGAAAAAAATTTCTAGATTTCTAATTTTTCTCTGAAAATTCCCATTTTTTCATCTCATCTCATCCATGTTTTCACACTCTTTATTGCATCTTCCTGCCACATATCGTCTTTTTTTTCTTGGAAAAATTTTAATTTCCCAGTTTTTTCCTTTATTTTTAACGCAAATCTCTTCTTTTTTTTCTCTGAAAATTCCCGTTTTTCCTAGTCAGAAATATCTAGTTTCATCCCGTTTTAAAAATTTCCCATATTTCTTAAATTTTTCATT</canonical>
            <polymorphic>GATATTAATGATCAAATACAAAATGCCGAATTCATGTACCCACCGTCACCGTGGAAAGAGATTTCGGAGAATGGTAAGTGGAGTGGCGGGAGTTCGAAAAGTTTTGAAAATTTTAATTATACCGAATTTTTAAATTTTTGAGCATTTTTTGAAAATTTGAATTTTCGAATTTCAAATTTTTGTAATTTTGGATTTCTTAAAGTTTTCGAAATATTTCATTTTGAATGTTGGCAAACTTTTAGTTCTTGAAAAATTCTAAATTTTTCCAGCTATCGAATTCATCAACGGACTGCTTCAAGTGAAGATGAGCAAGCGGTATACGGTAGCGAAGGCGCAGTCGCATATCTGGATGCAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTSTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCTGGTCGGACCTTCGAGTGTTGGAAAAAGCAGTTGGTCAACGTTTCGTCACTCACGAATCGGATGATTCCAGATGGCATGCCTATGAAAAAGAACACAACGTCACACCGGTCTATGTCTGAAATTTTTTGTCCCTTGAAAAAAATTTCTAGATTTCTAATTTTTCTCTGAAAATTCCCATTTTTTCATCTCATCTCATCCATGTTTTCACACTCTTTATTGCATCTTCCTGCCACATATCGTCTTTTTTTTCTTGGAAAAATTTTAATTTCCCAGTTTTTTCCTTTATTTTTAACGCAAATCTCTTCTTTTTTTTCTCTGAAAATTCCCGTTTTTCCTAGTCAGAAATATCTAGTTTCATCCCGTTTTAAAAATTTCCCATATTTCTTAAATTTTTCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>216 199 166 103 96 42 42 31 27 23 23 8 6 5 5 4 2 2</canonical_bands>
                <polymorphic_bands>295 216 166 103 42 42 31 27 23 23 8 6 5 5 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGGTACAGTAATCCAAAATTCA</pcr_primer_p1>
		<pcr_primer_p2>AGATGGTGTAGTTCTGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCT</canonical_amplicon>
		<polymorphic_amplicon>CAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTSTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11410</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>172246</contig_pos>
        <strand>+</strand>
        <context>TATGTATATC[A/T]TCAAATTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATC</left_flank>
        <right_flank>TCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAATACAAAATGCCGAATTCATGTACCCACCGTCACCGTGGAAAGAGATTTCGGAGAATGGTAAGTGGAGTGGCGGGAGTTCGAAAAGTTTTGAAAATTTTAATTATACCGAATTTTTAAATTTTTGAGCATTTTTTGAAAATTTGAATTTTCGAATTTCAAATTTTTGTAATTTTGGATTTCTTAAAGTTTTCGAAATATTTCATTTTGAATGTTGGCAAACTTTTAGTTCTTGAAAAATTCTAAATTTTTCCAGCTATCGAATTCATCAACGGACTGCTTCAAGTGAAGATGAGCAAGCGGTATACGGTAGCGAAGGCGCAGTCGCATATCTGGATGCAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCTGGTCGGACCTTCGAGTGTTGGAAAAAGCAGTTGGTCAACGTTTCGTCACTCACGAATCGGATGATTCCAGATGGCATGCCTATGAAAAAGAACACAACGTCACACCGGTCTATGTCTGAAATTTTTTGTCCCTTGAAAAAAATTTCTAGATTTCTAATTTTTCTCTGAAAATTCCCATTTTTTCATCTCATCTCATCCATGTTTTCACACTCTTTATTGCATCTTCCTGCCACATATCGTCTTTTTTTTCTTGGAAAAATTTTAATTTCCCAGTTTTTTCCTTTATTTTTAACGCAAATCTCTTCTTTTTTTTCTCTGAAAATTCCCGTTTTTCCTAGTCAGAAATATCTAGTTTCATCCCGTTTTAAAAATTTCCCATATTTCTTAAATTTTTCATTCACAATTTGCC</canonical>
            <polymorphic>TCAAATACAAAATGCCGAATTCATGTACCCACCGTCACCGTGGAAAGAGATTTCGGAGAATGGTAAGTGGAGTGGCGGGAGTTCGAAAAGTTTTGAAAATTTTAATTATACCGAATTTTTAAATTTTTGAGCATTTTTTGAAAATTTGAATTTTCGAATTTCAAATTTTTGTAATTTTGGATTTCTTAAAGTTTTCGAAATATTTCATTTTGAATGTTGGCAAACTTTTAGTTCTTGAAAAATTCTAAATTTTTCCAGCTATCGAATTCATCAACGGACTGCTTCAAGTGAAGATGAGCAAGCGGTATACGGTAGCGAAGGCGCAGTCGCATATCTGGATGCAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCWTCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCTGGTCGGACCTTCGAGTGTTGGAAAAAGCAGTTGGTCAACGTTTCGTCACTCACGAATCGGATGATTCCAGATGGCATGCCTATGAAAAAGAACACAACGTCACACCGGTCTATGTCTGAAATTTTTTGTCCCTTGAAAAAAATTTCTAGATTTCTAATTTTTCTCTGAAAATTCCCATTTTTTCATCTCATCTCATCCATGTTTTCACACTCTTTATTGCATCTTCCTGCCACATATCGTCTTTTTTTTCTTGGAAAAATTTTAATTTCCCAGTTTTTTCCTTTATTTTTAACGCAAATCTCTTCTTTTTTTTCTCTGAAAATTCCCGTTTTTCCTAGTCAGAAATATCTAGTTTCATCCCGTTTTAAAAATTTCCCATATTTCTTAAATTTTTCATTCACAATTTGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGTACAGTAATCCAAAATTCA</pcr_primer_p1>
		<pcr_primer_p2>AGATGGTGTAGTTCTGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCT</canonical_amplicon>
		<polymorphic_amplicon>CAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCWTCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11411</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>172270</contig_pos>
        <strand></strand>
        <context>GAAAAAAACA[A/G]TTCTAAAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACA</left_flank>
        <right_flank>TTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTACCCACCGTCACCGTGGAAAGAGATTTCGGAGAATGGTAAGTGGAGTGGCGGGAGTTCGAAAAGTTTTGAAAATTTTAATTATACCGAATTTTTAAATTTTTGAGCATTTTTTGAAAATTTGAATTTTCGAATTTCAAATTTTTGTAATTTTGGATTTCTTAAAGTTTTCGAAATATTTCATTTTGAATGTTGGCAAACTTTTAGTTCTTGAAAAATTCTAAATTTTTCCAGCTATCGAATTCATCAACGGACTGCTTCAAGTGAAGATGAGCAAGCGGTATACGGTAGCGAAGGCGCAGTCGCATATCTGGATGCAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCTGGTCGGACCTTCGAGTGTTGGAAAAAGCAGTTGGTCAACGTTTCGTCACTCACGAATCGGATGATTCCAGATGGCATGCCTATGAAAAAGAACACAACGTCACACCGGTCTATGTCTGAAATTTTTTGTCCCTTGAAAAAAATTTCTAGATTTCTAATTTTTCTCTGAAAATTCCCATTTTTTCATCTCATCTCATCCATGTTTTCACACTCTTTATTGCATCTTCCTGCCACATATCGTCTTTTTTTTCTTGGAAAAATTTTAATTTCCCAGTTTTTTCCTTTATTTTTAACGCAAATCTCTTCTTTTTTTTCTCTGAAAATTCCCGTTTTTCCTAGTCAGAAATATCTAGTTTCATCCCGTTTTAAAAATTTCCCATATTTCTTAAATTTTTCATTCACAATTTGCCATATGATCCTCGATTTACTTCCCC</canonical>
            <polymorphic>GTACCCACCGTCACCGTGGAAAGAGATTTCGGAGAATGGTAAGTGGAGTGGCGGGAGTTCGAAAAGTTTTGAAAATTTTAATTATACCGAATTTTTAAATTTTTGAGCATTTTTTGAAAATTTGAATTTTCGAATTTCAAATTTTTGTAATTTTGGATTTCTTAAAGTTTTCGAAATATTTCATTTTGAATGTTGGCAAACTTTTAGTTCTTGAAAAATTCTAAATTTTTCCAGCTATCGAATTCATCAACGGACTGCTTCAAGTGAAGATGAGCAAGCGGTATACGGTAGCGAAGGCGCAGTCGCATATCTGGATGCAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACARTTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCTGGTCGGACCTTCGAGTGTTGGAAAAAGCAGTTGGTCAACGTTTCGTCACTCACGAATCGGATGATTCCAGATGGCATGCCTATGAAAAAGAACACAACGTCACACCGGTCTATGTCTGAAATTTTTTGTCCCTTGAAAAAAATTTCTAGATTTCTAATTTTTCTCTGAAAATTCCCATTTTTTCATCTCATCTCATCCATGTTTTCACACTCTTTATTGCATCTTCCTGCCACATATCGTCTTTTTTTTCTTGGAAAAATTTTAATTTCCCAGTTTTTTCCTTTATTTTTAACGCAAATCTCTTCTTTTTTTTCTCTGAAAATTCCCGTTTTTCCTAGTCAGAAATATCTAGTTTCATCCCGTTTTAAAAATTTCCCATATTTCTTAAATTTTTCATTCACAATTTGCCATATGATCCTCGATTTACTTCCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>165 94 88 73 68 57 49 40 35 32 28 24 21 21 19 18 17 15 15 14 14 10 9 9 9 8 8 8 7 7 6 6 6</canonical_bands>
                <polymorphic_bands>165 94 88 73 68 57 49 40 35 34 32 28 24 21 21 18 17 15 14 14 10 9 9 9 8 8 8 7 7 6 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGGTACAGTAATCCAAAATTCA</pcr_primer_p1>
		<pcr_primer_p2>AGATGGTGTAGTTCTGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCT</canonical_amplicon>
		<polymorphic_amplicon>CAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACARTTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11412</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>172290</contig_pos>
        <strand>+</strand>
        <context>TTCAAATTCT[C/T]AAATTTTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCT</left_flank>
        <right_flank>AAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCTGGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAGATTTCGGAGAATGGTAAGTGGAGTGGCGGGAGTTCGAAAAGTTTTGAAAATTTTAATTATACCGAATTTTTAAATTTTTGAGCATTTTTTGAAAATTTGAATTTTCGAATTTCAAATTTTTGTAATTTTGGATTTCTTAAAGTTTTCGAAATATTTCATTTTGAATGTTGGCAAACTTTTAGTTCTTGAAAAATTCTAAATTTTTCCAGCTATCGAATTCATCAACGGACTGCTTCAAGTGAAGATGAGCAAGCGGTATACGGTAGCGAAGGCGCAGTCGCATATCTGGATGCAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCTGGTCGGACCTTCGAGTGTTGGAAAAAGCAGTTGGTCAACGTTTCGTCACTCACGAATCGGATGATTCCAGATGGCATGCCTATGAAAAAGAACACAACGTCACACCGGTCTATGTCTGAAATTTTTTGTCCCTTGAAAAAAATTTCTAGATTTCTAATTTTTCTCTGAAAATTCCCATTTTTTCATCTCATCTCATCCATGTTTTCACACTCTTTATTGCATCTTCCTGCCACATATCGTCTTTTTTTTCTTGGAAAAATTTTAATTTCCCAGTTTTTTCCTTTATTTTTAACGCAAATCTCTTCTTTTTTTTCTCTGAAAATTCCCGTTTTTCCTAGTCAGAAATATCTAGTTTCATCCCGTTTTAAAAATTTCCCATATTTCTTAAATTTTTCATTCACAATTTGCCATATGATCCTCGATTTACTTCCCCTATGTTTTATATGCAAATGG</canonical>
            <polymorphic>AAGAGATTTCGGAGAATGGTAAGTGGAGTGGCGGGAGTTCGAAAAGTTTTGAAAATTTTAATTATACCGAATTTTTAAATTTTTGAGCATTTTTTGAAAATTTGAATTTTCGAATTTCAAATTTTTGTAATTTTGGATTTCTTAAAGTTTTCGAAATATTTCATTTTGAATGTTGGCAAACTTTTAGTTCTTGAAAAATTCTAAATTTTTCCAGCTATCGAATTCATCAACGGACTGCTTCAAGTGAAGATGAGCAAGCGGTATACGGTAGCGAAGGCGCAGTCGCATATCTGGATGCAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTYAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCTGGTCGGACCTTCGAGTGTTGGAAAAAGCAGTTGGTCAACGTTTCGTCACTCACGAATCGGATGATTCCAGATGGCATGCCTATGAAAAAGAACACAACGTCACACCGGTCTATGTCTGAAATTTTTTGTCCCTTGAAAAAAATTTCTAGATTTCTAATTTTTCTCTGAAAATTCCCATTTTTTCATCTCATCTCATCCATGTTTTCACACTCTTTATTGCATCTTCCTGCCACATATCGTCTTTTTTTTCTTGGAAAAATTTTAATTTCCCAGTTTTTTCCTTTATTTTTAACGCAAATCTCTTCTTTTTTTTCTCTGAAAATTCCCGTTTTTCCTAGTCAGAAATATCTAGTTTCATCCCGTTTTAAAAATTTCCCATATTTCTTAAATTTTTCATTCACAATTTGCCATATGATCCTCGATTTACTTCCCCTATGTTTTATATGCAAATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGTACAGTAATCCAAAATTCAA</pcr_primer_p1>
		<pcr_primer_p2>CGACCAGATGGTGTAGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCTGGTCG</canonical_amplicon>
		<polymorphic_amplicon>AGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTYAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCTGGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11416</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>172303</contig_pos>
        <strand>+</strand>
        <context>ATTTTTTCCA[A/T]AAAAWGTCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCA</left_flank>
        <right_flank>AAAAAGTCTATTTTTTTCCAGAACTACACCATCTGGTCGGACCTTCGAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATGGTAAGTGGAGTGGCGGGAGTTCGAAAAGTTTTGAAAATTTTAATTATACCGAATTTTTAAATTTTTGAGCATTTTTTGAAAATTTGAATTTTCGAATTTCAAATTTTTGTAATTTTGGATTTCTTAAAGTTTTCGAAATATTTCATTTTGAATGTTGGCAAACTTTTAGTTCTTGAAAAATTCTAAATTTTTCCAGCTATCGAATTCATCAACGGACTGCTTCAAGTGAAGATGAGCAAGCGGTATACGGTAGCGAAGGCGCAGTCGCATATCTGGATGCAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCTGGTCGGACCTTCGAGTGTTGGAAAAAGCAGTTGGTCAACGTTTCGTCACTCACGAATCGGATGATTCCAGATGGCATGCCTATGAAAAAGAACACAACGTCACACCGGTCTATGTCTGAAATTTTTTGTCCCTTGAAAAAAATTTCTAGATTTCTAATTTTTCTCTGAAAATTCCCATTTTTTCATCTCATCTCATCCATGTTTTCACACTCTTTATTGCATCTTCCTGCCACATATCGTCTTTTTTTTCTTGGAAAAATTTTAATTTCCCAGTTTTTTCCTTTATTTTTAACGCAAATCTCTTCTTTTTTTTCTCTGAAAATTCCCGTTTTTCCTAGTCAGAAATATCTAGTTTCATCCCGTTTTAAAAATTTCCCATATTTCTTAAATTTTTCATTCACAATTTGCCATATGATCCTCGATTTACTTCCCCTATGTTTTATATGCAAATGGAGAAAAATGTTTC</canonical>
            <polymorphic>GAATGGTAAGTGGAGTGGCGGGAGTTCGAAAAGTTTTGAAAATTTTAATTATACCGAATTTTTAAATTTTTGAGCATTTTTTGAAAATTTGAATTTTCGAATTTCAAATTTTTGTAATTTTGGATTTCTTAAAGTTTTCGAAATATTTCATTTTGAATGTTGGCAAACTTTTAGTTCTTGAAAAATTCTAAATTTTTCCAGCTATCGAATTCATCAACGGACTGCTTCAAGTGAAGATGAGCAAGCGGTATACGGTAGCGAAGGCGCAGTCGCATATCTGGATGCAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAWAAAAAGTCTATTTTTTTCCAGAACTACACCATCTGGTCGGACCTTCGAGTGTTGGAAAAAGCAGTTGGTCAACGTTTCGTCACTCACGAATCGGATGATTCCAGATGGCATGCCTATGAAAAAGAACACAACGTCACACCGGTCTATGTCTGAAATTTTTTGTCCCTTGAAAAAAATTTCTAGATTTCTAATTTTTCTCTGAAAATTCCCATTTTTTCATCTCATCTCATCCATGTTTTCACACTCTTTATTGCATCTTCCTGCCACATATCGTCTTTTTTTTCTTGGAAAAATTTTAATTTCCCAGTTTTTTCCTTTATTTTTAACGCAAATCTCTTCTTTTTTTTCTCTGAAAATTCCCGTTTTTCCTAGTCAGAAATATCTAGTTTCATCCCGTTTTAAAAATTTCCCATATTTCTTAAATTTTTCATTCACAATTTGCCATATGATCCTCGATTTACTTCCCCTATGTTTTATATGCAAATGGAGAAAAATGTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAACAAAAACTACCGTAACC</pcr_primer_p1>
		<pcr_primer_p2>ACGTTGTGTTCTTTTTCATAGG</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>CAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCTGGTCGGACCTTCGAGTGTTGGAAAAAGCAGTTGGTCAACGTTTCGTCACTCACGAATCGGATGATTCCAGATGGCATGCCTATGAAAAAGAACACAACGT</canonical_amplicon>
		<polymorphic_amplicon>CAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAWAAAAAGTCTATTTTTTTCCAGAACTACACCATCTGGTCGGACCTTCGAGTGTTGGAAAAAGCAGTTGGTCAACGTTTCGTCACTCACGAATCGGATGATTCCAGATGGCATGCCTATGAAAAAGAACACAACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11418</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>174942</contig_pos>
        <strand></strand>
        <context>TTTTCTTTTT[T/C]CTTCAATAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGAATATGAACATCATCAATAAATTTTTTTTTCTTTGCTTTTTTCTTTTT</left_flank>
        <right_flank>CTTCAATAAAAATCCTTGTTTGAAAGCTAAAACTTTCAAAAAAGAATTAA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCAGTCAACGAACTCTCAGCAGCCAATTGAGAATTTTCGAAAAAATTACTGGGGCGCGCTTTCTGACCACCTCGCCTGAACCCACGTGCGGATTGAATGAAAATCATTTCTTTTTATCCATTTTCTCGATTTCCTTCGCTTCAATATAGCACATTTCGTTTACCAGTAATTTTGATTTTTTTTTTTTGAAATTTCAATTTTTAATGAAAATTTTCAGATGGGTTGCTGCTGGTCTGTCATCAAATGCCCTTGCCAATGTATCAGTTGTCGTAAGCAAACACGCTCGATTGCCGATGTCTCAATAGAGCACATTTTCAGTTCTAACATCCACATGTCTTCTTCCTCTGTGTTGCCTGACAATTCTGACTGGAATCTTTCTTTTCTTCTTCTACCACGTGGAAATTATGAGATTTCAACATGATACAAAGCACTTTTTTGGGATGGAACATGAATATGAACATCATCAATAAATTTTTTTTTCTTTGCTTTTTTCTTTTTTCTTCAATAAAAATCCTTGTTTGAAAGCTAAAACTTTCAAAAAAGAATTAAGAACTACAGTATCCACTGTTTCGTTGCGGAACCATCGACAGTTTTAAGAAGCGCGCCTTTAAGTTTGTCACACCACCCTCCTCCTTTCGCACACTCTCTCGCTGAAAATTCTTGTTTTTTCGAATTTATGATTTTTCGCCGGACATTTCTCAAATTTTCCTAAAATTTTACTGTCTATTCANNNNNNNNNNCGCCCACGTTTTATTGAATAGACAGTAATAAAAACTGATTTTTTCAGCTCACAGCACACATAAAATGCCGAGTCATCAACGCTATCATAAAGCGTTCAGATATATTGCCGAAAATGTCAAAGAATACAAAAATCCAGAGAACTTTTCGCTTTGGCGCAAAGAAAGCAAACATGCGGAGTCATATACAGGGAATAACCGAGATTTCAATAGAGCGTTAGTAGTATTCTGTTTTGATAAAATTTTGCGAATATATATTTTC</canonical>
            <polymorphic>GTCAGTCAACGAACTCTCAGCAGCCAATTGAGAATTTTCGAAAAAATTACTGGGGCGCGCTTTCTGACCACCTCGCCTGAACCCACGTGCGGATTGAATGAAAATCATTTCTTTTTATCCATTTTCTCGATTTCCTTCGCTTCAATATAGCACATTTCGTTTACCAGTAATTTTGATTTTTTTTTTTTGAAATTTCAATTTTTAATGAAAATTTTCAGATGGGTTGCTGCTGGTCTGTCATCAAATGCCCTTGCCAATGTATCAGTTGTCGTAAGCAAACACGCTCGATTGCCGATGTCTCAATAGAGCACATTTTCAGTTCTAACATCCACATGTCTTCTTCCTCTGTGTTGCCTGACAATTCTGACTGGAATCTTTCTTTTCTTCTTCTACCACGTGGAAATTATGAGATTTCAACATGATACAAAGCACTTTTTTGGGATGGAACATGAATATGAACATCATCAATAAATTTTTTTTTCTTTGCTTTTTTCTTTTTYCTTCAATAAAAATCCTTGTTTGAAAGCTAAAACTTTCAAAAAAGAATTAAGAACTACAGTATCCACTGTTTCGTTGCGGAACCATCGACAGTTTTAAGAAGCGCGCCTTTAAGTTTGTCACACCACCCTCCTCCTTTCGCACACTCTCTCGCTGAAAATTCTTGTTTTTTCGAATTTATGATTTTTCGCCGGACATTTCTCAAATTTTCCTAAAATTTTACTGTCTATTCANNNNNNNNNNCGCCCACGTTTTATTGAATAGACAGTAATAAAAACTGATTTTTTCAGCTCACAGCACACATAAAATGCCGAGTCATCAACGCTATCATAAAGCGTTCAGATATATTGCCGAAAATGTCAAAGAATACAAAAATCCAGAGAACTTTTCGCTTTGGCGCAAAGAAAGCAAACATGCGGAGTCATATACAGGGAATAACCGAGATTTCAATAGAGCGTTAGTAGTATTCTGTTTTGATAAAATTTTGCGAATATATATTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGGAACATGAATATGAACATC</pcr_primer_p1>
		<pcr_primer_p2>CGAAAAATCATAAATTCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATGGAACATGAATATGAACATCATCAATAAATTTTTTTTTCTTTGCTTTTTTCTTTTTTCTTCAATAAAAATCCTTGTTTGAAAGCTAAAACTTTCAAAAAAGAATTAAGAACTACAGTATCCACTGTTTCGTTGCGGAACCATCGACAGTTTTAAGAAGCGCGCCTTTAAGTTTGTCACACCACCCTCCTCCTTTCGCACACTCTCTCGCTGAAAATTCTTGTTTTTTCGAATTTATGATTTTTCG</canonical_amplicon>
		<polymorphic_amplicon>GATGGAACATGAATATGAACATCATCAATAAATTTTTTTTTCTTTGCTTTTTTCTTTTTYCTTCAATAAAAATCCTTGTTTGAAAGCTAAAACTTTCAAAAAAGAATTAAGAACTACAGTATCCACTGTTTCGTTGCGGAACCATCGACAGTTTTAAGAAGCGCGCCTTTAAGTTTGTCACACCACCCTCCTCCTTTCGCACACTCTCTCGCTGAAAATTCTTGTTTTTTCGAATTTATGATTTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11420</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>49863</contig_pos>
        <strand>+</strand>
        <context>AGTTGTTTGA[A/G]TATTTGTATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGCCCAGTCTGGAAATTTATTTATACATATTTCATCTTCAGTTGTTTGA</left_flank>
        <right_flank>TATTTGTATCGTTTCTTAGTTTTATCCAAGATCATTTACCACTGCTGCCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTTTCTCAACGTCTCCATCTCTCTCACATTTTACTTGCTCCGACTCGCGGAGCTCATTCGTATTCAATCGGTGATATTGGCACCTCGTGTAGGAGCCTCGAGTATTTATATTTTACTGAATTTCCATCTTCACATTATTCATTTTTGAAATGTATCCTATAACAAAATAGTTGATCGCCTTATGGCTGGAGATCTTTATTTTGTGCATTCTACCATCTGATTTTTCTGAAGTTCAATCGATTTTTGAATGTGTTATTTATAATTGTAAGTGATTAAACAACGAATAAACCCTCACGATATTATGTTTTTCAGATCTCAAAAATGGGATCCCTTGAATTATTATGGAGACGTGTTGCTCAAAGAAGTAGTTATTTTTAGAGATCTCAGCATATGATGCCCACAACAAGGATTTTATTTTTTAGTTTTGTTCAAAGTCATCATGACATGCTGCCCAGTCTGGAAATTTATTTATACATATTTCATCTTCAGTTGTTTGAGTATTTGTATCGTTTCTTAGTTTTATCCAAGATCATTTACCACTGCTGCCCAAAGAAATATTCCATTTTTATTGTTTCTCATTTAGTTTTAGAGATTTTAAACATTATTTCCGCATGTGCTGCCCGTACAAATGCTATTATTTTAAAGTAGTTTTTATTATATTTTTTTCTGATTAAAACAGGTTCCCATTTTTTAAAAATATTATCAACCAGTGTTGCCCAAACCAATGCTGCCAACCAAGTGCATCGCCTTAATATTTTTATTTTTAAGCATTTCAAAATTTTGATTGTTGTTGTTTTTATGAATGAAATAAAATATTATTAAAATTTCTTCCCATTTTTTAGTTAACAAATTTTCAAAAATGAAATGGTTTGTTATTTGCCGGAGGTTTGCATTCACTTCGAGTTCAAAGTTTTTGTTTTTCAAAAAGCCGCAAAAACTTAAACTTGGGTTCTAGAACGATTGAATTTAATAAATTATGTCTATCTGTTGCCTATCAT</canonical>
            <polymorphic>TCGTTTCTCAACGTCTCCATCTCTCTCACATTTTACTTGCTCCGACTCGCGGAGCTCATTCGTATTCAATCGGTGATATTGGCACCTCGTGTAGGAGCCTCGAGTATTTATATTTTACTGAATTTCCATCTTCACATTATTCATTTTTGAAATGTATCCTATAACAAAATAGTTGATCGCCTTATGGCTGGAGATCTTTATTTTGTGCATTCTACCATCTGATTTTTCTGAAGTTCAATCGATTTTTGAATGTGTTATTTATAATTGTAAGTGATTAAACAACGAATAAACCCTCACGATATTATGTTTTTCAGATCTCAAAAATGGGATCCCTTGAATTATTATGGAGACGTGTTGCTCAAAGAAGTAGTTATTTTTAGAGATCTCAGCATATGATGCCCACAACAAGGATTTTATTTTTTAGTTTTGTTCAAAGTCATCATGACATGCTGCCCAGTCTGGAAATTTATTTATACATATTTCATCTTCAGTTGTTTGARTATTTGTATCGTTTCTTAGTTTTATCCAAGATCATTTACCACTGCTGCCCAAAGAAATATTCCATTTTTATTGTTTCTCATTTAGTTTTAGAGATTTTAAACATTATTTCCGCATGTGCTGCCCGTACAAATGCTATTATTTTAAAGTAGTTTTTATTATATTTTTTTCTGATTAAAACAGGTTCCCATTTTTTAAAAATATTATCAACCAGTGTTGCCCAAACCAATGCTGCCAACCAAGTGCATCGCCTTAATATTTTTATTTTTAAGCATTTCAAAATTTTGATTGTTGTTGTTTTTATGAATGAAATAAAATATTATTAAAATTTCTTCCCATTTTTTAGTTAACAAATTTTCAAAAATGAAATGGTTTGTTATTTGCCGGAGGTTTGCATTCACTTCGAGTTCAAAGTTTTTGTTTTTCAAAAAGCCGCAAAAACTTAAACTTGGGTTCTAGAACGATTGAATTTAATAAATTATGTCTATCTGTTGCCTATCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAATTATTATGGAGACGTGTT</pcr_primer_p1>
		<pcr_primer_p2>AATGAGAAACAATAAAAATGGAATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGAATTATTATGGAGACGTGTTGCTCAAAGAAGTAGTTATTTTTAGAGATCTCAGCATATGATGCCCACAACAAGGATTTTATTTTTTAGTTTTGTTCAAAGTCATCATGACATGCTGCCCAGTCTGGAAATTTATTTATACATATTTCATCTTCAGTTGTTTGAGTATTTGTATCGTTTCTTAGTTTTATCCAAGATCATTTACCACTGCTGCCCAAAGAAATATTCCATTTTTATTGTTTCTCATT</canonical_amplicon>
		<polymorphic_amplicon>TTGAATTATTATGGAGACGTGTTGCTCAAAGAAGTAGTTATTTTTAGAGATCTCAGCATATGATGCCCACAACAAGGATTTTATTTTTTAGTTTTGTTCAAAGTCATCATGACATGCTGCCCAGTCTGGAAATTTATTTATACATATTTCATCTTCAGTTGTTTGARTATTTGTATCGTTTCTTAGTTTTATCCAAGATCATTTACCACTGCTGCCCAAAGAAATATTCCATTTTTATTGTTTCTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11421</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>49974</contig_pos>
        <strand>+</strand>
        <context>ACATTATTTC[A/C]GCATGTGCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCATTTTTATTGTTTCTCATTTAGTTTTAGAGATTTTAAACATTATTTC</left_flank>
        <right_flank>GCATGTGCTGCCCGTACAAATGCTATTATTTTAAAGTAGTTTTTATTATA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTACTGAATTTCCATCTTCACATTATTCATTTTTGAAATGTATCCTATAACAAAATAGTTGATCGCCTTATGGCTGGAGATCTTTATTTTGTGCATTCTACCATCTGATTTTTCTGAAGTTCAATCGATTTTTGAATGTGTTATTTATAATTGTAAGTGATTAAACAACGAATAAACCCTCACGATATTATGTTTTTCAGATCTCAAAAATGGGATCCCTTGAATTATTATGGAGACGTGTTGCTCAAAGAAGTAGTTATTTTTAGAGATCTCAGCATATGATGCCCACAACAAGGATTTTATTTTTTAGTTTTGTTCAAAGTCATCATGACATGCTGCCCAGTCTGGAAATTTATTTATACATATTTCATCTTCAGTTGTTTGAGTATTTGTATCGTTTCTTAGTTTTATCCAAGATCATTTACCACTGCTGCCCAAAGAAATATTCCATTTTTATTGTTTCTCATTTAGTTTTAGAGATTTTAAACATTATTTCCGCATGTGCTGCCCGTACAAATGCTATTATTTTAAAGTAGTTTTTATTATATTTTTTTCTGATTAAAACAGGTTCCCATTTTTTAAAAATATTATCAACCAGTGTTGCCCAAACCAATGCTGCCAACCAAGTGCATCGCCTTAATATTTTTATTTTTAAGCATTTCAAAATTTTGATTGTTGTTGTTTTTATGAATGAAATAAAATATTATTAAAATTTCTTCCCATTTTTTAGTTAACAAATTTTCAAAAATGAAATGGTTTGTTATTTGCCGGAGGTTTGCATTCACTTCGAGTTCAAAGTTTTTGTTTTTCAAAAAGCCGCAAAAACTTAAACTTGGGTTCTAGAACGATTGAATTTAATAAATTATGTCTATCTGTTGCCTATCATTTTTAATTTTGTCCCTTTTGCTAGTTTTACCAAAAGTTTGAAAAACAAAAGAAAAGCTGAAGTAGAAAAAACAGTCGTTAGAAAAAGTTCAAAAAGTCAAAGACGATAAAA</canonical>
            <polymorphic>ATTTTACTGAATTTCCATCTTCACATTATTCATTTTTGAAATGTATCCTATAACAAAATAGTTGATCGCCTTATGGCTGGAGATCTTTATTTTGTGCATTCTACCATCTGATTTTTCTGAAGTTCAATCGATTTTTGAATGTGTTATTTATAATTGTAAGTGATTAAACAACGAATAAACCCTCACGATATTATGTTTTTCAGATCTCAAAAATGGGATCCCTTGAATTATTATGGAGACGTGTTGCTCAAAGAAGTAGTTATTTTTAGAGATCTCAGCATATGATGCCCACAACAAGGATTTTATTTTTTAGTTTTGTTCAAAGTCATCATGACATGCTGCCCAGTCTGGAAATTTATTTATACATATTTCATCTTCAGTTGTTTGAGTATTTGTATCGTTTCTTAGTTTTATCCAAGATCATTTACCACTGCTGCCCAAAGAAATATTCCATTTTTATTGTTTCTCATTTAGTTTTAGAGATTTTAAACATTATTTCMGCATGTGCTGCCCGTACAAATGCTATTATTTTAAAGTAGTTTTTATTATATTTTTTTCTGATTAAAACAGGTTCCCATTTTTTAAAAATATTATCAACCAGTGTTGCCCAAACCAATGCTGCCAACCAAGTGCATCGCCTTAATATTTTTATTTTTAAGCATTTCAAAATTTTGATTGTTGTTGTTTTTATGAATGAAATAAAATATTATTAAAATTTCTTCCCATTTTTTAGTTAACAAATTTTCAAAAATGAAATGGTTTGTTATTTGCCGGAGGTTTGCATTCACTTCGAGTTCAAAGTTTTTGTTTTTCAAAAAGCCGCAAAAACTTAAACTTGGGTTCTAGAACGATTGAATTTAATAAATTATGTCTATCTGTTGCCTATCATTTTTAATTTTGTCCCTTTTGCTAGTTTTACCAAAAGTTTGAAAAACAAAAGAAAAGCTGAAGTAGAAAAAACAGTCGTTAGAAAAAGTTCAAAAAGTCAAAGACGATAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>499 321 180</canonical_bands>
                <polymorphic_bands>820 180</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTATCCAAGATCATTTACCA</pcr_primer_p1>
		<pcr_primer_p2>AAAATATTAAGGCGATGCACT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTTTTATCCAAGATCATTTACCACTGCTGCCCAAAGAAATATTCCATTTTTATTGTTTCTCATTTAGTTTTAGAGATTTTAAACATTATTTCCGCATGTGCTGCCCGTACAAATGCTATTATTTTAAAGTAGTTTTTATTATATTTTTTTCTGATTAAAACAGGTTCCCATTTTTTAAAAATATTATCAACCAGTGTTGCCCAAACCAATGCTGCCAACCAAGTGCATCGCCTTAATATTTT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTATCCAAGATCATTTACCACTGCTGCCCAAAGAAATATTCCATTTTTATTGTTTCTCATTTAGTTTTAGAGATTTTAAACATTATTTCMGCATGTGCTGCCCGTACAAATGCTATTATTTTAAAGTAGTTTTTATTATATTTTTTTCTGATTAAAACAGGTTCCCATTTTTTAAAAATATTATCAACCAGTGTTGCCCAAACCAATGCTGCCAACCAAGTGCATCGCCTTAATATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11423</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>107586</contig_pos>
        <strand></strand>
        <context>AAAAAAAAAC[T/G]AATTATGCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TGTCATTCACAGTTTTGGCTATGCTCTACTCTACTTGCAAAAAAAAAAAC</left_flank>
        <right_flank>AATTATGCATTTTAAACGCAAAGCTCATTTTCGATACCCATTTGACAGCT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCGCACTGCCTCCATATTGTGCTGGAAATCATGGACACAGAGAGCCCCAGTGACTGGACATCGGAGCATTTGCGATCGGATCAAATTGACCATGCTGCATATAACGTGGTCGTGTTAAACTGGATCCGCCAGTTTTACAAAAGTACAGCTTATTGTGAGTTTGTAGGGATTTTGTCTATTCCAATGGTTTCTTTTTTCAGAACAGGGTCGCAACGAATTATAGCGAGTTTATAGCTATTCAATGTTTCTCACAGATTTTTGTTATAAATTTTCAAAATAGCTTACAATTTTTCAAAGGCAGTCTTGACTTTGGAATTAACTATATCGGTTTCTTATGAAAATCAAAAAAAAATTCCATATGAAAATATGTTTCAAGAGATTTTCAGGTAAATAAAAACTGTATCATTATTTATCTCTCACAAAAAAGGTTTTTCAGATGTACATGTTCTGTCATTCACAGTTTTGGCTATGCTCTACTCTACTTGCAAAAAAAAAAACTAATTATGCATTTTAAACGCAAAGCTCATTTTCGATACCCATTTGACAGCTTTTCCATTCATTTTTGCAAATCTAAAAATTAATAAGTGAGTTGATATTCAACCAACAAAAAAAGCAAGAAGAAAAATATATGTTTTCAGGTTTTACATAATGTCATCTACACTTTTCCACACTTCATTCACCTGCAACCCTATTCATAATTTTCACAAATTATCTAATTGTTTAAAAAAATACTTCCACTTTTCTATTTCCTTTTTTTGTATTTCTTTTTTCACCTTCTTTCACTTTTGTGCAACTTTTTTCATAAATATTTGAAAATTGAAACTGGTCAAAAGGTTTCCGACAACTTGGATCAATTCTACAAAGAGTGTTTATAAAAAGTCACAGTTCGCATTAACGAAGATTTTTGAGAAAAATCAGTATTTCCAAAAGTTGTGGAATGAACGAAAACTTTGAAAATTTATATAATTCAATTTTGTTGAATGCAGAAAAAATAGACGC</canonical>
            <polymorphic>AGCGCACTGCCTCCATATTGTGCTGGAAATCATGGACACAGAGAGCCCCAGTGACTGGACATCGGAGCATTTGCGATCGGATCAAATTGACCATGCTGCATATAACGTGGTCGTGTTAAACTGGATCCGCCAGTTTTACAAAAGTACAGCTTATTGTGAGTTTGTAGGGATTTTGTCTATTCCAATGGTTTCTTTTTTCAGAACAGGGTCGCAACGAATTATAGCGAGTTTATAGCTATTCAATGTTTCTCACAGATTTTTGTTATAAATTTTCAAAATAGCTTACAATTTTTCAAAGGCAGTCTTGACTTTGGAATTAACTATATCGGTTTCTTATGAAAATCAAAAAAAAATTCCATATGAAAATATGTTTCAAGAGATTTTCAGGTAAATAAAAACTGTATCATTATTTATCTCTCACAAAAAAGGTTTTTCAGATGTACATGTTCTGTCATTCACAGTTTTGGCTATGCTCTACTCTACTTGCAAAAAAAAAAACKAATTATGCATTTTAAACGCAAAGCTCATTTTCGATACCCATTTGACAGCTTTTCCATTCATTTTTGCAAATCTAAAAATTAATAAGTGAGTTGATATTCAACCAACAAAAAAAGCAAGAAGAAAAATATATGTTTTCAGGTTTTACATAATGTCATCTACACTTTTCCACACTTCATTCACCTGCAACCCTATTCATAATTTTCACAAATTATCTAATTGTTTAAAAAAATACTTCCACTTTTCTATTTCCTTTTTTTGTATTTCTTTTTTCACCTTCTTTCACTTTTGTGCAACTTTTTTCATAAATATTTGAAAATTGAAACTGGTCAAAAGGTTTCCGACAACTTGGATCAATTCTACAAAGAGTGTTTATAAAAAGTCACAGTTCGCATTAACGAAGATTTTTGAGAAAAATCAGTATTTCCAAAAGTTGTGGAATGAACGAAAACTTTGAAAATTTATATAATTCAATTTTGTTGAATGCAGAAAAAATAGACGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGATGTACATGTTCTGTCATT</pcr_primer_p1>
		<pcr_primer_p2>GAATGAAGTGTGGAAAAGTGTAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCAGATGTACATGTTCTGTCATTCACAGTTTTGGCTATGCTCTACTCTACTTGCAAAAAAAAAAACTAATTATGCATTTTAAACGCAAAGCTCATTTTCGATACCCATTTGACAGCTTTTCCATTCATTTTTGCAAATCTAAAAATTAATAAGTGAGTTGATATTCAACCAACAAAAAAAGCAAGAAGAAAAATATATGTTTTCAGGTTTTACATAATGTCATCTACACTTTTCCACACTTCATTC</canonical_amplicon>
		<polymorphic_amplicon>TCAGATGTACATGTTCTGTCATTCACAGTTTTGGCTATGCTCTACTCTACTTGCAAAAAAAAAAACKAATTATGCATTTTAAACGCAAAGCTCATTTTCGATACCCATTTGACAGCTTTTCCATTCATTTTTGCAAATCTAAAAATTAATAAGTGAGTTGATATTCAACCAACAAAAAAAGCAAGAAGAAAAATATATGTTTTCAGGTTTTACATAATGTCATCTACACTTTTCCACACTTCATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11424</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>132653</contig_pos>
        <strand>+</strand>
        <context>CTCTTACATC[C/T]TTTGACTTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCTCTACTTTCAATCAAAAATGGTCAGCAATAATATGAACTCTTACATC</left_flank>
        <right_flank>TTTGACTTGTTTTTTTTACAGGTTGTAAAAGCGGTCGGGTATTTTGTTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTACGGAGCAACACGACCTAGCACGGGTGTTCGTTCTGTTTAGATTAGATTACAAACTCCGCCTATTTAATACTTCAATCTACTTTTGTGGTCCTCCAATTTCGAACTAATTCACCCTGTCCATTAAATCCGAGGCTCTTCGAGGCACCTTAATGAACGGTCTCCACTTTTAATTATGGTCTTTACACATATTCTCTTTCGATCTTCTTATTTTGTGTATTCAAATTTCTATTTTCCACACTTTGGAAGGTAACCCATTCCAAATAAGCTCCATCCGTTTCTTCATCTACTGAGAACCCCTAATTAGTTGCACTGTCACTTTAATAGCTAGTTTACTCTCATTCTTCTCCAAGGTATATCATCCCGTTTATGACTTAATTGAGCTTACCACATACTAATAGTACTGTGTTCATGTACTTCGGCAACAGCAAAGAAAGATGCATTCTATGCTCTACTTTCAATCAAAAATGGTCAGCAATAATATGAACTCTTACATCCTTTGACTTGTTTTTTTTACAGGTTGTAAAAGCGGTCGGGTATTTTGTTGGAATTGAAAGAGCAGAATACCAAAATGTCGAGTGTCATCTTCCGTTGAAGCTAGAAAATCTTGGCGTGACTTCAATGAAAATCAGTTCACAAGATATAGATAATAGACACACTTAGACACAAGCCACACACCGCAGATTATCGTTTTGCTCAAATTTCCCTAGTCTCGGCTTCCAAAACGTGTGGGAGACCCTGATATCGAAACATTTTTCTCTTAAAATAATAAATCTAAACATATTTCCAATTGTGAATCAGTACTTGATATTTTTCCAGACTCCGGTAGTTGCAATCGAAGGAGTGGATACTGTTTCGGGAGTGTCAGAAGCCAAAAAACGCAGCATTCAATGCAAATGCGGAGCAATCATTGGTAGAATGGAAGCTGTTAAGGAGCTCAACGACAAAATCCGTTCCGACATTTCGAAATTGACCCAGACAGGATTCGTCACTGTTCT</canonical>
            <polymorphic>TGGTACGGAGCAACACGACCTAGCACGGGTGTTCGTTCTGTTTAGATTAGATTACAAACTCCGCCTATTTAATACTTCAATCTACTTTTGTGGTCCTCCAATTTCGAACTAATTCACCCTGTCCATTAAATCCGAGGCTCTTCGAGGCACCTTAATGAACGGTCTCCACTTTTAATTATGGTCTTTACACATATTCTCTTTCGATCTTCTTATTTTGTGTATTCAAATTTCTATTTTCCACACTTTGGAAGGTAACCCATTCCAAATAAGCTCCATCCGTTTCTTCATCTACTGAGAACCCCTAATTAGTTGCACTGTCACTTTAATAGCTAGTTTACTCTCATTCTTCTCCAAGGTATATCATCCCGTTTATGACTTAATTGAGCTTACCACATACTAATAGTACTGTGTTCATGTACTTCGGCAACAGCAAAGAAAGATGCATTCTATGCTCTACTTTCAATCAAAAATGGTCAGCAATAATATGAACTCTTACATCYTTTGACTTGTTTTTTTTACAGGTTGTAAAAGCGGTCGGGTATTTTGTTGGAATTGAAAGAGCAGAATACCAAAATGTCGAGTGTCATCTTCCGTTGAAGCTAGAAAATCTTGGCGTGACTTCAATGAAAATCAGTTCACAAGATATAGATAATAGACACACTTAGACACAAGCCACACACCGCAGATTATCGTTTTGCTCAAATTTCCCTAGTCTCGGCTTCCAAAACGTGTGGGAGACCCTGATATCGAAACATTTTTCTCTTAAAATAATAAATCTAAACATATTTCCAATTGTGAATCAGTACTTGATATTTTTCCAGACTCCGGTAGTTGCAATCGAAGGAGTGGATACTGTTTCGGGAGTGTCAGAAGCCAAAAAACGCAGCATTCAATGCAAATGCGGAGCAATCATTGGTAGAATGGAAGCTGTTAAGGAGCTCAACGACAAAATCCGTTCCGACATTTCGAAATTGACCCAGACAGGATTCGTCACTGTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCTCATTCTTCTCCAAGGTAT</pcr_primer_p1>
		<pcr_primer_p2>ACACTCGACATTTTGGTATTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACTCTCATTCTTCTCCAAGGTATATCATCCCGTTTATGACTTAATTGAGCTTACCACATACTAATAGTACTGTGTTCATGTACTTCGGCAACAGCAAAGAAAGATGCATTCTATGCTCTACTTTCAATCAAAAATGGTCAGCAATAATATGAACTCTTACATCCTTTGACTTGTTTTTTTTACAGGTTGTAAAAGCGGTCGGGTATTTTGTTGGAATTGAAAGAGCAGAATACCAAAATGTCGAGTGT</canonical_amplicon>
		<polymorphic_amplicon>ACTCTCATTCTTCTCCAAGGTATATCATCCCGTTTATGACTTAATTGAGCTTACCACATACTAATAGTACTGTGTTCATGTACTTCGGCAACAGCAAAGAAAGATGCATTCTATGCTCTACTTTCAATCAAAAATGGTCAGCAATAATATGAACTCTTACATCYTTTGACTTGTTTTTTTTACAGGTTGTAAAAGCGGTCGGGTATTTTGTTGGAATTGAAAGAGCAGAATACCAAAATGTCGAGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11425</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>134160</contig_pos>
        <strand></strand>
        <context>CACTGTTTTT[C/G]GSCGCCGGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTGCCTTTGTTTAAGAACATTTGTCAAATGGACTGCATTTCACTGTTTTT</left_flank>
        <right_flank>GTCGCCGGTCCGTTTTTGTTGCTAATCCTGCTCCTTTTTCACTTTAATTC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATCGAACGAGTTTTGGATTCGTAATTAAGTGCAGCAACCATGCTCAAAAAAGTTGTCTGTAATAAATATTGTGGTAGTTTCGGATGATTCCTCTTCCACCCAATATTCACTATCGACATCAAAGCATGTAGCCAAGGCTGAGCAATGAGTCATCTTTTTCAATAAGGTTTATGACACTCTTACGGACCTTCGGAGACTCATTTTTGAAAGTCCATTAAAACATTTCTCTTTTGATAGCACTGAAAAATTTCACAACAGGATTTGCTGTCCCCACCTAGAAGCCGGAAAATCCATTAACATGTCTTATTTGTTAGTTGCTCCAGCTATAGGAAATAAAGATCTTTCAGATTCACTTGTTGCGATAGACCAAACTTTCTGAACTCACCAAAGTTCTTCGCACTCCAGTAATTTTTCATTCTTGGCTCTTCTCCCCTTCTTTTTCTGTCATTGCCTTTGTTTAAGAACATTTGTCAAATGGACTGCATTTCACTGTTTTTCGTCGCCGGTCCGTTTTTGTTGCTAATCCTGCTCCTTTTTCACTTTAATTCTTTCAATTTATCATTAAGTAAGCCCAGACTCGCCGTGTACTCATCCTTCCATTTTCTTCTGGCAAACTATTCTGGCTCATTTTTTGGAAATTGTCTTCATTTCAGTATTCGAGATTTCACTTCAAAATTATTGCGGGTTCTGAAGAAAGTCTATTTTCAGTGGCCTTAAATTTTTAATTGCTGGACAAACCACCGGGAAAAATTTCGAAGATTTGCAAAAGTTAATTTTCAGTAGACTTCGTCTCGAAGTAGAAGCTATTCCATTTTTTTTGACTATTTGTGCTAGAAGCAACTTGTAAGTTTTATTTTATTTTCTATTTTTCGGAAAAATGTTGATACTTCAGATTCTACTCAAAATGCCAATTGCCGCACTGTTCTTAGCAACCAGTGATGAGAGAATGGAAAAACTCCGTGAAGATTGTCAGCTAGAAAATGAAAACAACAAGGAAG</canonical>
            <polymorphic>GAATCGAACGAGTTTTGGATTCGTAATTAAGTGCAGCAACCATGCTCAAAAAAGTTGTCTGTAATAAATATTGTGGTAGTTTCGGATGATTCCTCTTCCACCCAATATTCACTATCGACATCAAAGCATGTAGCCAAGGCTGAGCAATGAGTCATCTTTTTCAATAAGGTTTATGACACTCTTACGGACCTTCGGAGACTCATTTTTGAAAGTCCATTAAAACATTTCTCTTTTGATAGCACTGAAAAATTTCACAACAGGATTTGCTGTCCCCACCTAGAAGCCGGAAAATCCATTAACATGTCTTATTTGTTAGTTGCTCCAGCTATAGGAAATAAAGATCTTTCAGATTCACTTGTTGCGATAGACCAAACTTTCTGAACTCACCAAAGTTCTTCGCACTCCAGTAATTTTTCATTCTTGGCTCTTCTCCCCTTCTTTTTCTGTCATTGCCTTTGTTTAAGAACATTTGTCAAATGGACTGCATTTCACTGTTTTTSGTCGCCGGTCCGTTTTTGTTGCTAATCCTGCTCCTTTTTCACTTTAATTCTTTCAATTTATCATTAAGTAAGCCCAGACTCGCCGTGTACTCATCCTTCCATTTTCTTCTGGCAAACTATTCTGGCTCATTTTTTGGAAATTGTCTTCATTTCAGTATTCGAGATTTCACTTCAAAATTATTGCGGGTTCTGAAGAAAGTCTATTTTCAGTGGCCTTAAATTTTTAATTGCTGGACAAACCACCGGGAAAAATTTCGAAGATTTGCAAAAGTTAATTTTCAGTAGACTTCGTCTCGAAGTAGAAGCTATTCCATTTTTTTTGACTATTTGTGCTAGAAGCAACTTGTAAGTTTTATTTTATTTTCTATTTTTCGGAAAAATGTTGATACTTCAGATTCTACTCAAAATGCCAATTGCCGCACTGTTCTTAGCAACCAGTGATGAGAGAATGGAAAAACTCCGTGAAGATTGTCAGCTAGAAAATGAAAACAACAAGGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGACCAAACTTTCTGAACTCAC</pcr_primer_p1>
		<pcr_primer_p2>AGAAGAAAATGGAAGGATGAGTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TAGACCAAACTTTCTGAACTCACCAAAGTTCTTCGCACTCCAGTAATTTTTCATTCTTGGCTCTTCTCCCCTTCTTTTTCTGTCATTGCCTTTGTTTAAGAACATTTGTCAAATGGACTGCATTTCACTGTTTTTCGTCGCCGGTCCGTTTTTGTTGCTAATCCTGCTCCTTTTTCACTTTAATTCTTTCAATTTATCATTAAGTAAGCCCAGACTCGCCGTGTACTCATCCTTCCATTTTCTTCT</canonical_amplicon>
		<polymorphic_amplicon>TAGACCAAACTTTCTGAACTCACCAAAGTTCTTCGCACTCCAGTAATTTTTCATTCTTGGCTCTTCTCCCCTTCTTTTTCTGTCATTGCCTTTGTTTAAGAACATTTGTCAAATGGACTGCATTTCACTGTTTTTSGTCGCCGGTCCGTTTTTGTTGCTAATCCTGCTCCTTTTTCACTTTAATTCTTTCAATTTATCATTAAGTAAGCCCAGACTCGCCGTGTACTCATCCTTCCATTTTCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11426</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>134106</contig_pos>
        <strand>+</strand>
        <context>TTCTTTTTCT[G/T]TCATTGCCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCGCACTCCAGTAATTTTTCATTCTTGGCTCTTCTCCCCTTCTTTTTCT</left_flank>
        <right_flank>TCATTGCCTTTGTTTAAGAACATTTGTCAAATGGACTGCATTTCACTGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCTTTGAACTTCTACATTTAATAACCAAAAGGATTACAGAAATGATCATTTGGAATCGAACGAGTTTTGGATTCGTAATTAAGTGCAGCAACCATGCTCAAAAAAGTTGTCTGTAATAAATATTGTGGTAGTTTCGGATGATTCCTCTTCCACCCAATATTCACTATCGACATCAAAGCATGTAGCCAAGGCTGAGCAATGAGTCATCTTTTTCAATAAGGTTTATGACACTCTTACGGACCTTCGGAGACTCATTTTTGAAAGTCCATTAAAACATTTCTCTTTTGATAGCACTGAAAAATTTCACAACAGGATTTGCTGTCCCCACCTAGAAGCCGGAAAATCCATTAACATGTCTTATTTGTTAGTTGCTCCAGCTATAGGAAATAAAGATCTTTCAGATTCACTTGTTGCGATAGACCAAACTTTCTGAACTCACCAAAGTTCTTCGCACTCCAGTAATTTTTCATTCTTGGCTCTTCTCCCCTTCTTTTTCTGTCATTGCCTTTGTTTAAGAACATTTGTCAAATGGACTGCATTTCACTGTTTTTCGTCGCCGGTCCGTTTTTGTTGCTAATCCTGCTCCTTTTTCACTTTAATTCTTTCAATTTATCATTAAGTAAGCCCAGACTCGCCGTGTACTCATCCTTCCATTTTCTTCTGGCAAACTATTCTGGCTCATTTTTTGGAAATTGTCTTCATTTCAGTATTCGAGATTTCACTTCAAAATTATTGCGGGTTCTGAAGAAAGTCTATTTTCAGTGGCCTTAAATTTTTAATTGCTGGACAAACCACCGGGAAAAATTTCGAAGATTTGCAAAAGTTAATTTTCAGTAGACTTCGTCTCGAAGTAGAAGCTATTCCATTTTTTTTGACTATTTGTGCTAGAAGCAACTTGTAAGTTTTATTTTATTTTCTATTTTTCGGAAAAATGTTGATACTTCAGATTCTACTCAAAATGCCAATTGCCGCACTGTTCTTAGCAACCAGTGATGAGA</canonical>
            <polymorphic>CTTCTTTGAACTTCTACATTTAATAACCAAAAGGATTACAGAAATGATCATTTGGAATCGAACGAGTTTTGGATTCGTAATTAAGTGCAGCAACCATGCTCAAAAAAGTTGTCTGTAATAAATATTGTGGTAGTTTCGGATGATTCCTCTTCCACCCAATATTCACTATCGACATCAAAGCATGTAGCCAAGGCTGAGCAATGAGTCATCTTTTTCAATAAGGTTTATGACACTCTTACGGACCTTCGGAGACTCATTTTTGAAAGTCCATTAAAACATTTCTCTTTTGATAGCACTGAAAAATTTCACAACAGGATTTGCTGTCCCCACCTAGAAGCCGGAAAATCCATTAACATGTCTTATTTGTTAGTTGCTCCAGCTATAGGAAATAAAGATCTTTCAGATTCACTTGTTGCGATAGACCAAACTTTCTGAACTCACCAAAGTTCTTCGCACTCCAGTAATTTTTCATTCTTGGCTCTTCTCCCCTTCTTTTTCTKTCATTGCCTTTGTTTAAGAACATTTGTCAAATGGACTGCATTTCACTGTTTTTCGTCGCCGGTCCGTTTTTGTTGCTAATCCTGCTCCTTTTTCACTTTAATTCTTTCAATTTATCATTAAGTAAGCCCAGACTCGCCGTGTACTCATCCTTCCATTTTCTTCTGGCAAACTATTCTGGCTCATTTTTTGGAAATTGTCTTCATTTCAGTATTCGAGATTTCACTTCAAAATTATTGCGGGTTCTGAAGAAAGTCTATTTTCAGTGGCCTTAAATTTTTAATTGCTGGACAAACCACCGGGAAAAATTTCGAAGATTTGCAAAAGTTAATTTTCAGTAGACTTCGTCTCGAAGTAGAAGCTATTCCATTTTTTTTGACTATTTGTGCTAGAAGCAACTTGTAAGTTTTATTTTATTTTCTATTTTTCGGAAAAATGTTGATACTTCAGATTCTACTCAAAATGCCAATTGCCGCACTGTTCTTAGCAACCAGTGATGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGACCAAACTTTCTGAACTCAC</pcr_primer_p1>
		<pcr_primer_p2>AGAAGAAAATGGAAGGATGAGTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TAGACCAAACTTTCTGAACTCACCAAAGTTCTTCGCACTCCAGTAATTTTTCATTCTTGGCTCTTCTCCCCTTCTTTTTCTGTCATTGCCTTTGTTTAAGAACATTTGTCAAATGGACTGCATTTCACTGTTTTTCGTCGCCGGTCCGTTTTTGTTGCTAATCCTGCTCCTTTTTCACTTTAATTCTTTCAATTTATCATTAAGTAAGCCCAGACTCGCCGTGTACTCATCCTTCCATTTTCTTCT</canonical_amplicon>
		<polymorphic_amplicon>TAGACCAAACTTTCTGAACTCACCAAAGTTCTTCGCACTCCAGTAATTTTTCATTCTTGGCTCTTCTCCCCTTCTTTTTCTKTCATTGCCTTTGTTTAAGAACATTTGTCAAATGGACTGCATTTCACTGTTTTTCGTCGCCGGTCCGTTTTTGTTGCTAATCCTGCTCCTTTTTCACTTTAATTCTTTCAATTTATCATTAAGTAAGCCCAGACTCGCCGTGTACTCATCCTTCCATTTTCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11427</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>134064</contig_pos>
        <strand>+</strand>
        <context>TCTTCGCACT[A/C]CAGTAATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACTTGTTGCGATAGACCAAACTTTCTGAACTCACCAAAGTTCTTCGCACT</left_flank>
        <right_flank>CAGTAATTTTTCATTCTTGGCTCTTCTCCCCTTCTTTTTCTGTCATTGCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATCTGTCTACACCACCGATGACTCTACATAAAACCGTCAGCTTCTTTGAACTTCTACATTTAATAACCAAAAGGATTACAGAAATGATCATTTGGAATCGAACGAGTTTTGGATTCGTAATTAAGTGCAGCAACCATGCTCAAAAAAGTTGTCTGTAATAAATATTGTGGTAGTTTCGGATGATTCCTCTTCCACCCAATATTCACTATCGACATCAAAGCATGTAGCCAAGGCTGAGCAATGAGTCATCTTTTTCAATAAGGTTTATGACACTCTTACGGACCTTCGGAGACTCATTTTTGAAAGTCCATTAAAACATTTCTCTTTTGATAGCACTGAAAAATTTCACAACAGGATTTGCTGTCCCCACCTAGAAGCCGGAAAATCCATTAACATGTCTTATTTGTTAGTTGCTCCAGCTATAGGAAATAAAGATCTTTCAGATTCACTTGTTGCGATAGACCAAACTTTCTGAACTCACCAAAGTTCTTCGCACTCCAGTAATTTTTCATTCTTGGCTCTTCTCCCCTTCTTTTTCTGTCATTGCCTTTGTTTAAGAACATTTGTCAAATGGACTGCATTTCACTGTTTTTCGTCGCCGGTCCGTTTTTGTTGCTAATCCTGCTCCTTTTTCACTTTAATTCTTTCAATTTATCATTAAGTAAGCCCAGACTCGCCGTGTACTCATCCTTCCATTTTCTTCTGGCAAACTATTCTGGCTCATTTTTTGGAAATTGTCTTCATTTCAGTATTCGAGATTTCACTTCAAAATTATTGCGGGTTCTGAAGAAAGTCTATTTTCAGTGGCCTTAAATTTTTAATTGCTGGACAAACCACCGGGAAAAATTTCGAAGATTTGCAAAAGTTAATTTTCAGTAGACTTCGTCTCGAAGTAGAAGCTATTCCATTTTTTTTGACTATTTGTGCTAGAAGCAACTTGTAAGTTTTATTTTATTTTCTATTTTTCGGAAAAATGTTGATACTTCAGATTCTACTCA</canonical>
            <polymorphic>CAATCTGTCTACACCACCGATGACTCTACATAAAACCGTCAGCTTCTTTGAACTTCTACATTTAATAACCAAAAGGATTACAGAAATGATCATTTGGAATCGAACGAGTTTTGGATTCGTAATTAAGTGCAGCAACCATGCTCAAAAAAGTTGTCTGTAATAAATATTGTGGTAGTTTCGGATGATTCCTCTTCCACCCAATATTCACTATCGACATCAAAGCATGTAGCCAAGGCTGAGCAATGAGTCATCTTTTTCAATAAGGTTTATGACACTCTTACGGACCTTCGGAGACTCATTTTTGAAAGTCCATTAAAACATTTCTCTTTTGATAGCACTGAAAAATTTCACAACAGGATTTGCTGTCCCCACCTAGAAGCCGGAAAATCCATTAACATGTCTTATTTGTTAGTTGCTCCAGCTATAGGAAATAAAGATCTTTCAGATTCACTTGTTGCGATAGACCAAACTTTCTGAACTCACCAAAGTTCTTCGCACTMCAGTAATTTTTCATTCTTGGCTCTTCTCCCCTTCTTTTTCTGTCATTGCCTTTGTTTAAGAACATTTGTCAAATGGACTGCATTTCACTGTTTTTCGTCGCCGGTCCGTTTTTGTTGCTAATCCTGCTCCTTTTTCACTTTAATTCTTTCAATTTATCATTAAGTAAGCCCAGACTCGCCGTGTACTCATCCTTCCATTTTCTTCTGGCAAACTATTCTGGCTCATTTTTTGGAAATTGTCTTCATTTCAGTATTCGAGATTTCACTTCAAAATTATTGCGGGTTCTGAAGAAAGTCTATTTTCAGTGGCCTTAAATTTTTAATTGCTGGACAAACCACCGGGAAAAATTTCGAAGATTTGCAAAAGTTAATTTTCAGTAGACTTCGTCTCGAAGTAGAAGCTATTCCATTTTTTTTGACTATTTGTGCTAGAAGCAACTTGTAAGTTTTATTTTATTTTCTATTTTTCGGAAAAATGTTGATACTTCAGATTCTACTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTTTTGATAGCACTGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGACAAATGTTCTTAAACAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTTTTGATAGCACTGAAAAATTTCACAACAGGATTTGCTGTCCCCACCTAGAAGCCGGAAAATCCATTAACATGTCTTATTTGTTAGTTGCTCCAGCTATAGGAAATAAAGATCTTTCAGATTCACTTGTTGCGATAGACCAAACTTTCTGAACTCACCAAAGTTCTTCGCACTCCAGTAATTTTTCATTCTTGGCTCTTCTCCCCTTCTTTTTCTGTCATTGCCTTTGTTTAAGAACATTTGTCAAA</canonical_amplicon>
		<polymorphic_amplicon>CTCTTTTGATAGCACTGAAAAATTTCACAACAGGATTTGCTGTCCCCACCTAGAAGCCGGAAAATCCATTAACATGTCTTATTTGTTAGTTGCTCCAGCTATAGGAAATAAAGATCTTTCAGATTCACTTGTTGCGATAGACCAAACTTTCTGAACTCACCAAAGTTCTTCGCACTMCAGTAATTTTTCATTCTTGGCTCTTCTCCCCTTCTTTTTCTGTCATTGCCTTTGTTTAAGAACATTTGTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11428</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>134048</contig_pos>
        <strand>+</strand>
        <context>CTGAACTCAC[A/C]AAAGTTCTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGATCTTTCAGATTCACTTGTTGCGATAGACCAAACTTTCTGAACTCAC</left_flank>
        <right_flank>AAAGTTCTTCGCACTCCAGTAATTTTTCATTCTTGGCTCTTCTCCCCTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTATCTTGCCACAAACAATCTGTCTACACCACCGATGACTCTACATAAAACCGTCAGCTTCTTTGAACTTCTACATTTAATAACCAAAAGGATTACAGAAATGATCATTTGGAATCGAACGAGTTTTGGATTCGTAATTAAGTGCAGCAACCATGCTCAAAAAAGTTGTCTGTAATAAATATTGTGGTAGTTTCGGATGATTCCTCTTCCACCCAATATTCACTATCGACATCAAAGCATGTAGCCAAGGCTGAGCAATGAGTCATCTTTTTCAATAAGGTTTATGACACTCTTACGGACCTTCGGAGACTCATTTTTGAAAGTCCATTAAAACATTTCTCTTTTGATAGCACTGAAAAATTTCACAACAGGATTTGCTGTCCCCACCTAGAAGCCGGAAAATCCATTAACATGTCTTATTTGTTAGTTGCTCCAGCTATAGGAAATAAAGATCTTTCAGATTCACTTGTTGCGATAGACCAAACTTTCTGAACTCACCAAAGTTCTTCGCACTCCAGTAATTTTTCATTCTTGGCTCTTCTCCCCTTCTTTTTCTGTCATTGCCTTTGTTTAAGAACATTTGTCAAATGGACTGCATTTCACTGTTTTTCGTCGCCGGTCCGTTTTTGTTGCTAATCCTGCTCCTTTTTCACTTTAATTCTTTCAATTTATCATTAAGTAAGCCCAGACTCGCCGTGTACTCATCCTTCCATTTTCTTCTGGCAAACTATTCTGGCTCATTTTTTGGAAATTGTCTTCATTTCAGTATTCGAGATTTCACTTCAAAATTATTGCGGGTTCTGAAGAAAGTCTATTTTCAGTGGCCTTAAATTTTTAATTGCTGGACAAACCACCGGGAAAAATTTCGAAGATTTGCAAAAGTTAATTTTCAGTAGACTTCGTCTCGAAGTAGAAGCTATTCCATTTTTTTTGACTATTTGTGCTAGAAGCAACTTGTAAGTTTTATTTTATTTTCTATTTTTCGGAAAAATGTTGATA</canonical>
            <polymorphic>AGTATCTTGCCACAAACAATCTGTCTACACCACCGATGACTCTACATAAAACCGTCAGCTTCTTTGAACTTCTACATTTAATAACCAAAAGGATTACAGAAATGATCATTTGGAATCGAACGAGTTTTGGATTCGTAATTAAGTGCAGCAACCATGCTCAAAAAAGTTGTCTGTAATAAATATTGTGGTAGTTTCGGATGATTCCTCTTCCACCCAATATTCACTATCGACATCAAAGCATGTAGCCAAGGCTGAGCAATGAGTCATCTTTTTCAATAAGGTTTATGACACTCTTACGGACCTTCGGAGACTCATTTTTGAAAGTCCATTAAAACATTTCTCTTTTGATAGCACTGAAAAATTTCACAACAGGATTTGCTGTCCCCACCTAGAAGCCGGAAAATCCATTAACATGTCTTATTTGTTAGTTGCTCCAGCTATAGGAAATAAAGATCTTTCAGATTCACTTGTTGCGATAGACCAAACTTTCTGAACTCACMAAAGTTCTTCGCACTCCAGTAATTTTTCATTCTTGGCTCTTCTCCCCTTCTTTTTCTGTCATTGCCTTTGTTTAAGAACATTTGTCAAATGGACTGCATTTCACTGTTTTTCGTCGCCGGTCCGTTTTTGTTGCTAATCCTGCTCCTTTTTCACTTTAATTCTTTCAATTTATCATTAAGTAAGCCCAGACTCGCCGTGTACTCATCCTTCCATTTTCTTCTGGCAAACTATTCTGGCTCATTTTTTGGAAATTGTCTTCATTTCAGTATTCGAGATTTCACTTCAAAATTATTGCGGGTTCTGAAGAAAGTCTATTTTCAGTGGCCTTAAATTTTTAATTGCTGGACAAACCACCGGGAAAAATTTCGAAGATTTGCAAAAGTTAATTTTCAGTAGACTTCGTCTCGAAGTAGAAGCTATTCCATTTTTTTTGACTATTTGTGCTAGAAGCAACTTGTAAGTTTTATTTTATTTTCTATTTTTCGGAAAAATGTTGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTTTTGATAGCACTGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGACAAATGTTCTTAAACAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTTTTGATAGCACTGAAAAATTTCACAACAGGATTTGCTGTCCCCACCTAGAAGCCGGAAAATCCATTAACATGTCTTATTTGTTAGTTGCTCCAGCTATAGGAAATAAAGATCTTTCAGATTCACTTGTTGCGATAGACCAAACTTTCTGAACTCACCAAAGTTCTTCGCACTCCAGTAATTTTTCATTCTTGGCTCTTCTCCCCTTCTTTTTCTGTCATTGCCTTTGTTTAAGAACATTTGTCAAA</canonical_amplicon>
		<polymorphic_amplicon>CTCTTTTGATAGCACTGAAAAATTTCACAACAGGATTTGCTGTCCCCACCTAGAAGCCGGAAAATCCATTAACATGTCTTATTTGTTAGTTGCTCCAGCTATAGGAAATAAAGATCTTTCAGATTCACTTGTTGCGATAGACCAAACTTTCTGAACTCACMAAAGTTCTTCGCACTCCAGTAATTTTTCATTCTTGGCTCTTCTCCCCTTCTTTTTCTGTCATTGCCTTTGTTTAAGAACATTTGTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11429</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>133758</contig_pos>
        <strand>+</strand>
        <context>GWTTCCTCTT[C/T]CACCCAATAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAAGTTGTCTGTAATAAATATTGTGGTAGTTTCGGATGATTCCTCTT</left_flank>
        <right_flank>CACCCAATATTCACTATCGACATCAAAGCATGTAGCCAAGGCTGAGCAAT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAATGTTTTTTTCTTGAAATTAATAAACAAATGCAATGAAATGATTAAGTTTTTACAAATCTGTGTCAAATTTCAATCCGATTAGTTGTTTGGCATTGGTCGGTTTAATTTCAAATTTTTTGTTCCTATTTGTTAATTAATTGTATGTCCCAGAAACATTATCCCGAATAATATATCTTAGAAGTTTGAACCGACAGAATAAGTGAATTCGTTGTCCGATGCGAGAATTCCAAAGTCTACATAGTACCTTCTCAATGTCATTTTTAATGTCCTAAATCTTTCTTTCCAGAGTATCTTGCCACAAACAATCTGTCTACACCACCGATGACTCTACATAAAACCGTCAGCTTCTTTGAACTTCTACATTTAATAACCAAAAGGATTACAGAAATGATCATTTGGAATCGAACGAGTTTTGGATTCGTAATTAAGTGCAGCAACCATGCTCAAAAAAGTTGTCTGTAATAAATATTGTGGTAGTTTCGGATGATTCCTCTTCCACCCAATATTCACTATCGACATCAAAGCATGTAGCCAAGGCTGAGCAATGAGTCATCTTTTTCAATAAGGTTTATGACACTCTTACGGACCTTCGGAGACTCATTTTTGAAAGTCCATTAAAACATTTCTCTTTTGATAGCACTGAAAAATTTCACAACAGGATTTGCTGTCCCCACCTAGAAGCCGGAAAATCCATTAACATGTCTTATTTGTTAGTTGCTCCAGCTATAGGAAATAAAGATCTTTCAGATTCACTTGTTGCGATAGACCAAACTTTCTGAACTCACCAAAGTTCTTCGCACTCCAGTAATTTTTCATTCTTGGCTCTTCTCCCCTTCTTTTTCTGTCATTGCCTTTGTTTAAGAACATTTGTCAAATGGACTGCATTTCACTGTTTTTCGTCGCCGGTCCGTTTTTGTTGCTAATCCTGCTCCTTTTTCACTTTAATTCTTTCAATTTATCATTAAGTAAGCCCAGACTCGCCGTGTACTCATCCTT</canonical>
            <polymorphic>ATAATGTTTTTTTCTTGAAATTAATAAACAAATGCAATGAAATGATTAAGTTTTTACAAATCTGTGTCAAATTTCAATCCGATTAGTTGTTTGGCATTGGTCGGTTTAATTTCAAATTTTTTGTTCCTATTTGTTAATTAATTGTATGTCCCAGAAACATTATCCCGAATAATATATCTTAGAAGTTTGAACCGACAGAATAAGTGAATTCGTTGTCCGATGCGAGAATTCCAAAGTCTACATAGTACCTTCTCAATGTCATTTTTAATGTCCTAAATCTTTCTTTCCAGAGTATCTTGCCACAAACAATCTGTCTACACCACCGATGACTCTACATAAAACCGTCAGCTTCTTTGAACTTCTACATTTAATAACCAAAAGGATTACAGAAATGATCATTTGGAATCGAACGAGTTTTGGATTCGTAATTAAGTGCAGCAACCATGCTCAAAAAAGTTGTCTGTAATAAATATTGTGGTAGTTTCGGATGATTCCTCTTYCACCCAATATTCACTATCGACATCAAAGCATGTAGCCAAGGCTGAGCAATGAGTCATCTTTTTCAATAAGGTTTATGACACTCTTACGGACCTTCGGAGACTCATTTTTGAAAGTCCATTAAAACATTTCTCTTTTGATAGCACTGAAAAATTTCACAACAGGATTTGCTGTCCCCACCTAGAAGCCGGAAAATCCATTAACATGTCTTATTTGTTAGTTGCTCCAGCTATAGGAAATAAAGATCTTTCAGATTCACTTGTTGCGATAGACCAAACTTTCTGAACTCACCAAAGTTCTTCGCACTCCAGTAATTTTTCATTCTTGGCTCTTCTCCCCTTCTTTTTCTGTCATTGCCTTTGTTTAAGAACATTTGTCAAATGGACTGCATTTCACTGTTTTTCGTCGCCGGTCCGTTTTTGTTGCTAATCCTGCTCCTTTTTCACTTTAATTCTTTCAATTTATCATTAAGTAAGCCCAGACTCGCCGTGTACTCATCCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACCAAAAGGATTACAGAAATG</pcr_primer_p1>
		<pcr_primer_p2>TAATGGACTTTCAAAAATGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAACCAAAAGGATTACAGAAATGATCATTTGGAATCGAACGAGTTTTGGATTCGTAATTAAGTGCAGCAACCATGCTCAAAAAAGTTGTCTGTAATAAATATTGTGGTAGTTTCGGATGATTCCTCTTCCACCCAATATTCACTATCGACATCAAAGCATGTAGCCAAGGCTGAGCAATGAGTCATCTTTTTCAATAAGGTTTATGACACTCTTACGGACCTTCGGAGACTCATTTTTGAAAGTCCATTA</canonical_amplicon>
		<polymorphic_amplicon>TAACCAAAAGGATTACAGAAATGATCATTTGGAATCGAACGAGTTTTGGATTCGTAATTAAGTGCAGCAACCATGCTCAAAAAAGTTGTCTGTAATAAATATTGTGGTAGTTTCGGATGATTCCTCTTYCACCCAATATTCACTATCGACATCAAAGCATGTAGCCAAGGCTGAGCAATGAGTCATCTTTTTCAATAAGGTTTATGACACTCTTACGGACCTTCGGAGACTCATTTTTGAAAGTCCATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11430</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>133749</contig_pos>
        <strand>+</strand>
        <context>GTTTCGGATG[A/T]TTCCTCTTYC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCATGCTCAAAAAAGTTGTCTGTAATAAATATTGTGGTAGTTTCGGATG</left_flank>
        <right_flank>TTCCTCTTCCACCCAATATTCACTATCGACATCAAAGCATGTAGCCAAGG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCTACTGATAATGTTTTTTTCTTGAAATTAATAAACAAATGCAATGAAATGATTAAGTTTTTACAAATCTGTGTCAAATTTCAATCCGATTAGTTGTTTGGCATTGGTCGGTTTAATTTCAAATTTTTTGTTCCTATTTGTTAATTAATTGTATGTCCCAGAAACATTATCCCGAATAATATATCTTAGAAGTTTGAACCGACAGAATAAGTGAATTCGTTGTCCGATGCGAGAATTCCAAAGTCTACATAGTACCTTCTCAATGTCATTTTTAATGTCCTAAATCTTTCTTTCCAGAGTATCTTGCCACAAACAATCTGTCTACACCACCGATGACTCTACATAAAACCGTCAGCTTCTTTGAACTTCTACATTTAATAACCAAAAGGATTACAGAAATGATCATTTGGAATCGAACGAGTTTTGGATTCGTAATTAAGTGCAGCAACCATGCTCAAAAAAGTTGTCTGTAATAAATATTGTGGTAGTTTCGGATGATTCCTCTTCCACCCAATATTCACTATCGACATCAAAGCATGTAGCCAAGGCTGAGCAATGAGTCATCTTTTTCAATAAGGTTTATGACACTCTTACGGACCTTCGGAGACTCATTTTTGAAAGTCCATTAAAACATTTCTCTTTTGATAGCACTGAAAAATTTCACAACAGGATTTGCTGTCCCCACCTAGAAGCCGGAAAATCCATTAACATGTCTTATTTGTTAGTTGCTCCAGCTATAGGAAATAAAGATCTTTCAGATTCACTTGTTGCGATAGACCAAACTTTCTGAACTCACCAAAGTTCTTCGCACTCCAGTAATTTTTCATTCTTGGCTCTTCTCCCCTTCTTTTTCTGTCATTGCCTTTGTTTAAGAACATTTGTCAAATGGACTGCATTTCACTGTTTTTCGTCGCCGGTCCGTTTTTGTTGCTAATCCTGCTCCTTTTTCACTTTAATTCTTTCAATTTATCATTAAGTAAGCCCAGACTCGCCGTGTA</canonical>
            <polymorphic>AACCTACTGATAATGTTTTTTTCTTGAAATTAATAAACAAATGCAATGAAATGATTAAGTTTTTACAAATCTGTGTCAAATTTCAATCCGATTAGTTGTTTGGCATTGGTCGGTTTAATTTCAAATTTTTTGTTCCTATTTGTTAATTAATTGTATGTCCCAGAAACATTATCCCGAATAATATATCTTAGAAGTTTGAACCGACAGAATAAGTGAATTCGTTGTCCGATGCGAGAATTCCAAAGTCTACATAGTACCTTCTCAATGTCATTTTTAATGTCCTAAATCTTTCTTTCCAGAGTATCTTGCCACAAACAATCTGTCTACACCACCGATGACTCTACATAAAACCGTCAGCTTCTTTGAACTTCTACATTTAATAACCAAAAGGATTACAGAAATGATCATTTGGAATCGAACGAGTTTTGGATTCGTAATTAAGTGCAGCAACCATGCTCAAAAAAGTTGTCTGTAATAAATATTGTGGTAGTTTCGGATGWTTCCTCTTCCACCCAATATTCACTATCGACATCAAAGCATGTAGCCAAGGCTGAGCAATGAGTCATCTTTTTCAATAAGGTTTATGACACTCTTACGGACCTTCGGAGACTCATTTTTGAAAGTCCATTAAAACATTTCTCTTTTGATAGCACTGAAAAATTTCACAACAGGATTTGCTGTCCCCACCTAGAAGCCGGAAAATCCATTAACATGTCTTATTTGTTAGTTGCTCCAGCTATAGGAAATAAAGATCTTTCAGATTCACTTGTTGCGATAGACCAAACTTTCTGAACTCACCAAAGTTCTTCGCACTCCAGTAATTTTTCATTCTTGGCTCTTCTCCCCTTCTTTTTCTGTCATTGCCTTTGTTTAAGAACATTTGTCAAATGGACTGCATTTCACTGTTTTTCGTCGCCGGTCCGTTTTTGTTGCTAATCCTGCTCCTTTTTCACTTTAATTCTTTCAATTTATCATTAAGTAAGCCCAGACTCGCCGTGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>337 228 152 75 70 61 48 17 12</canonical_bands>
                <polymorphic_bands>337 228 152 131 75 48 17 12</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>412 261 240 70 17</canonical_bands>
                <polymorphic_bands>412 331 240 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAACCAAAAGGATTACAGAAATG</pcr_primer_p1>
		<pcr_primer_p2>TAATGGACTTTCAAAAATGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAACCAAAAGGATTACAGAAATGATCATTTGGAATCGAACGAGTTTTGGATTCGTAATTAAGTGCAGCAACCATGCTCAAAAAAGTTGTCTGTAATAAATATTGTGGTAGTTTCGGATGATTCCTCTTCCACCCAATATTCACTATCGACATCAAAGCATGTAGCCAAGGCTGAGCAATGAGTCATCTTTTTCAATAAGGTTTATGACACTCTTACGGACCTTCGGAGACTCATTTTTGAAAGTCCATTA</canonical_amplicon>
		<polymorphic_amplicon>TAACCAAAAGGATTACAGAAATGATCATTTGGAATCGAACGAGTTTTGGATTCGTAATTAAGTGCAGCAACCATGCTCAAAAAAGTTGTCTGTAATAAATATTGTGGTAGTTTCGGATGWTTCCTCTTCCACCCAATATTCACTATCGACATCAAAGCATGTAGCCAAGGCTGAGCAATGAGTCATCTTTTTCAATAAGGTTTATGACACTCTTACGGACCTTCGGAGACTCATTTTTGAAAGTCCATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11431</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>20104</contig_pos>
        <strand>+</strand>
        <context>GACAAGAAGA[A/G]AGAGGCTTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCTGCGGTCATTTTATTAGTACTAAAATTTATAATAGACGACAAGAAGA</left_flank>
        <right_flank>AGAGGCTTGTCTTATTATCTTTATATCCTTTTCCTCTTCTTGCTCTCCGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTCGGTCAAGTTTCAATTTTACGAATTTTTATTATGAAAAGGTCTGTGAATTGTCTTAAAAAGGCCTGTAACTTGTCTGAAAACCAATGTTTTTCCAAAATGCTGACAGATTTGATTTCAGCAAGTCAAGAGNNNNNNNNNNCACGGTTATGCTCCGCCCACTTTGAGTTTTCCTTTTGGACACGCGACGCACGACCGCGACGCGCCCGGAAAACCCAAAGTGGGCGGAGCATTGCCGTGTTTAGGCTCATTTTGAAGCTCTTGACTTGCTAAATTCAAATTTTGACATTTTTTCAGACAAAAACGTGTAGATTTTTCGAAAATCCATTTTTCAAAAATGCTCAAAATCCAAAAATGTGTGACTTTGCTCAAAACTTAAATTTTTGAAATTTTTAAACTTTTCATAACTCCCTGATCCTGAGTTTTTCCTAAATCTATGCCTCGGATGTCTGCGGTCATTTTATTAGTACTAAAATTTATAATAGACGACAAGAAGAGAGAGGCTTGTCTTATTATCTTTATATCCTTTTCCTCTTCTTGCTCTCCGATTGCTAATCCTTGGAAACTTGTCCGCTTTCGTTATTATTATTATTATGATCCATTCGGAAAAGGGAAAACATGAGCAATTTGGACTCAAATTACACCTCGTCGAGATATAATAGATCTCAAGACACAAATAAAGGGGCGAAAGCTAGAGATCGGAGGGCTAAAAATTTCTTAAAACTTCATTTAAACAATTTGAAACCTTAAAATTTGAATTTCCCATCAAATTCTCGTCATTTTGAGCCCAAAATCGACTATTTTGGGTGATTTTGAAGGGAATTTCACTTTTGGCTCAGTTGGTAATCATTCTGGCCAGTGAAAAAAATGTCCACGGGTTCGATTCCCTCTGGGGTCAAAACGTTTTTTTTCTTTTTTCAAGATTTTCTGGGATTTTAACTGACTCCGATTTTCAAAGTTTTCGAAATATTCCAAAAAAAATTTTCAAAATTTTCCGA</canonical>
            <polymorphic>TATTCGGTCAAGTTTCAATTTTACGAATTTTTATTATGAAAAGGTCTGTGAATTGTCTTAAAAAGGCCTGTAACTTGTCTGAAAACCAATGTTTTTCCAAAATGCTGACAGATTTGATTTCAGCAAGTCAAGAGNNNNNNNNNNCACGGTTATGCTCCGCCCACTTTGAGTTTTCCTTTTGGACACGCGACGCACGACCGCGACGCGCCCGGAAAACCCAAAGTGGGCGGAGCATTGCCGTGTTTAGGCTCATTTTGAAGCTCTTGACTTGCTAAATTCAAATTTTGACATTTTTTCAGACAAAAACGTGTAGATTTTTCGAAAATCCATTTTTCAAAAATGCTCAAAATCCAAAAATGTGTGACTTTGCTCAAAACTTAAATTTTTGAAATTTTTAAACTTTTCATAACTCCCTGATCCTGAGTTTTTCCTAAATCTATGCCTCGGATGTCTGCGGTCATTTTATTAGTACTAAAATTTATAATAGACGACAAGAAGARAGAGGCTTGTCTTATTATCTTTATATCCTTTTCCTCTTCTTGCTCTCCGATTGCTAATCCTTGGAAACTTGTCCGCTTTCGTTATTATTATTATTATGATCCATTCGGAAAAGGGAAAACATGAGCAATTTGGACTCAAATTACACCTCGTCGAGATATAATAGATCTCAAGACACAAATAAAGGGGCGAAAGCTAGAGATCGGAGGGCTAAAAATTTCTTAAAACTTCATTTAAACAATTTGAAACCTTAAAATTTGAATTTCCCATCAAATTCTCGTCATTTTGAGCCCAAAATCGACTATTTTGGGTGATTTTGAAGGGAATTTCACTTTTGGCTCAGTTGGTAATCATTCTGGCCAGTGAAAAAAATGTCCACGGGTTCGATTCCCTCTGGGGTCAAAACGTTTTTTTTCTTTTTTCAAGATTTTCTGGGATTTTAACTGACTCCGATTTTCAAAGTTTTCGAAATATTCCAAAAAAAATTTTCAAAATTTTCCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATCCAAAAATGTGTGAC</pcr_primer_p1>
		<pcr_primer_p2>ATAATAATAACGAAAGCGGACA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAAAATCCAAAAATGTGTGACTTTGCTCAAAACTTAAATTTTTGAAATTTTTAAACTTTTCATAACTCCCTGATCCTGAGTTTTTCCTAAATCTATGCCTCGGATGTCTGCGGTCATTTTATTAGTACTAAAATTTATAATAGACGACAAGAAGAGAGAGGCTTGTCTTATTATCTTTATATCCTTTTCCTCTTCTTGCTCTCCGATTGCTAATCCTTGGAAACTTGTCCGCTTTCGTTATTATTAT</canonical_amplicon>
		<polymorphic_amplicon>CAAAATCCAAAAATGTGTGACTTTGCTCAAAACTTAAATTTTTGAAATTTTTAAACTTTTCATAACTCCCTGATCCTGAGTTTTTCCTAAATCTATGCCTCGGATGTCTGCGGTCATTTTATTAGTACTAAAATTTATAATAGACGACAAGAAGARAGAGGCTTGTCTTATTATCTTTATATCCTTTTCCTCTTCTTGCTCTCCGATTGCTAATCCTTGGAAACTTGTCCGCTTTCGTTATTATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11432</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>20252</contig_pos>
        <strand>+</strand>
        <context>AAATTACACC[C/T]CGTCGAGATA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATCCATTCGGAAAAGGGAAAACATGAGCAATTTGGACTCAAATTACACC</left_flank>
        <right_flank>CGTCGAGATATAATAGATCTCAAGACACAAATAAAGGGGCGAAAGCTAGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTATGCTCCGCCCACTTTGAGTTTTCCTTTTGGACACGCGACGCACGACCGCGACGCGCCCGGAAAACCCAAAGTGGGCGGAGCATTGCCGTGTTTAGGCTCATTTTGAAGCTCTTGACTTGCTAAATTCAAATTTTGACATTTTTTCAGACAAAAACGTGTAGATTTTTCGAAAATCCATTTTTCAAAAATGCTCAAAATCCAAAAATGTGTGACTTTGCTCAAAACTTAAATTTTTGAAATTTTTAAACTTTTCATAACTCCCTGATCCTGAGTTTTTCCTAAATCTATGCCTCGGATGTCTGCGGTCATTTTATTAGTACTAAAATTTATAATAGACGACAAGAAGAGAGAGGCTTGTCTTATTATCTTTATATCCTTTTCCTCTTCTTGCTCTCCGATTGCTAATCCTTGGAAACTTGTCCGCTTTCGTTATTATTATTATTATGATCCATTCGGAAAAGGGAAAACATGAGCAATTTGGACTCAAATTACACCTCGTCGAGATATAATAGATCTCAAGACACAAATAAAGGGGCGAAAGCTAGAGATCGGAGGGCTAAAAATTTCTTAAAACTTCATTTAAACAATTTGAAACCTTAAAATTTGAATTTCCCATCAAATTCTCGTCATTTTGAGCCCAAAATCGACTATTTTGGGTGATTTTGAAGGGAATTTCACTTTTGGCTCAGTTGGTAATCATTCTGGCCAGTGAAAAAAATGTCCACGGGTTCGATTCCCTCTGGGGTCAAAACGTTTTTTTTCTTTTTTCAAGATTTTCTGGGATTTTAACTGACTCCGATTTTCAAAGTTTTCGAAATATTCCAAAAAAAATTTTCAAAATTTTCCGAAGTAGAATTTCAAGCTTTGCAACCTGAAATTTTGAATTTACTGTCAAATTCCCATCATTTTAAGCCCAACATTGTCTTCTTTAGACGATACTTAAAGGAAATTGCCTTTTTGGCGCAGCTGGTAAACGCTCTGGCCAGTGAAAAATAG</canonical>
            <polymorphic>GTTATGCTCCGCCCACTTTGAGTTTTCCTTTTGGACACGCGACGCACGACCGCGACGCGCCCGGAAAACCCAAAGTGGGCGGAGCATTGCCGTGTTTAGGCTCATTTTGAAGCTCTTGACTTGCTAAATTCAAATTTTGACATTTTTTCAGACAAAAACGTGTAGATTTTTCGAAAATCCATTTTTCAAAAATGCTCAAAATCCAAAAATGTGTGACTTTGCTCAAAACTTAAATTTTTGAAATTTTTAAACTTTTCATAACTCCCTGATCCTGAGTTTTTCCTAAATCTATGCCTCGGATGTCTGCGGTCATTTTATTAGTACTAAAATTTATAATAGACGACAAGAAGAGAGAGGCTTGTCTTATTATCTTTATATCCTTTTCCTCTTCTTGCTCTCCGATTGCTAATCCTTGGAAACTTGTCCGCTTTCGTTATTATTATTATTATGATCCATTCGGAAAAGGGAAAACATGAGCAATTTGGACTCAAATTACACCYCGTCGAGATATAATAGATCTCAAGACACAAATAAAGGGGCGAAAGCTAGAGATCGGAGGGCTAAAAATTTCTTAAAACTTCATTTAAACAATTTGAAACCTTAAAATTTGAATTTCCCATCAAATTCTCGTCATTTTGAGCCCAAAATCGACTATTTTGGGTGATTTTGAAGGGAATTTCACTTTTGGCTCAGTTGGTAATCATTCTGGCCAGTGAAAAAAATGTCCACGGGTTCGATTCCCTCTGGGGTCAAAACGTTTTTTTTCTTTTTTCAAGATTTTCTGGGATTTTAACTGACTCCGATTTTCAAAGTTTTCGAAATATTCCAAAAAAAATTTTCAAAATTTTCCGAAGTAGAATTTCAAGCTTTGCAACCTGAAATTTTGAATTTACTGTCAAATTCCCATCATTTTAAGCCCAACATTGTCTTCTTTAGACGATACTTAAAGGAAATTGCCTTTTTGGCGCAGCTGGTAAACGCTCTGGCCAGTGAAAAATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTATGATCCATTCGGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>ATTACCAACTGAGCCAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>TATTATGATCCATTCGGAAAAGGGAAAACATGAGCAATTTGGACTCAAATTACACCTCGTCGAGATATAATAGATCTCAAGACACAAATAAAGGGGCGAAAGCTAGAGATCGGAGGGCTAAAAATTTCTTAAAACTTCATTTAAACAATTTGAAACCTTAAAATTTGAATTTCCCATCAAATTCTCGTCATTTTGAGCCCAAAATCGACTATTTTGGGTGATTTTGAAGGGAATTTCACTTTTGGCTCAGTTGGTAAT</canonical_amplicon>
		<polymorphic_amplicon>TATTATGATCCATTCGGAAAAGGGAAAACATGAGCAATTTGGACTCAAATTACACCYCGTCGAGATATAATAGATCTCAAGACACAAATAAAGGGGCGAAAGCTAGAGATCGGAGGGCTAAAAATTTCTTAAAACTTCATTTAAACAATTTGAAACCTTAAAATTTGAATTTCCCATCAAATTCTCGTCATTTTGAGCCCAAAATCGACTATTTTGGGTGATTTTGAAGGGAATTTCACTTTTGGCTCAGTTGGTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11433</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>23840</contig_pos>
        <strand>+</strand>
        <context>GTCAATTTTC[A/C]CCCGAGAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAGACTCTGACACAACAACTGGCTCTGGGACTAGAATGCGGTCAATTTTC</left_flank>
        <right_flank>CCCGAGAAATTCGAGAAGTTCCGAGAGCAAATGAATCGGATAATGCAATT</right_flank>
        <qual_score>149</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGCCTAAACACAAGTAGGCTCCGCCCACGTTGGGTTTCCCCGTTTGAACACGCGACGCACGACCGCGACGCACTCGAAAAATCAAAGTGGGCGTAGCCTAGGCGTGTTTGAGCTCATTTTGAAGCGCTGAACAAGACAAACACAATAATAAAAAATTCATCAGCCCAAACGCAAAACCTAGACTGCCAGGTGCAAAAGTTCGGCCATCAAAAGTTTGACCAATCCTTTTGACTGCAATATCCTCTGAAATGGGCGGAGCCTAATCGTGTTTAGACTCATTTTAAAGCTCCTGACTTGCTGAACTCAATTATCTGCATCGATTCAAACAGAAATGTGTAAAGTTTCAGAAACATCACATCGGAACAACTGCTCAAATCGAAATGGTGTGACTTGTACATCATTGCTCTGATGCAAACAGCCGACAAAATAAATTTGCCTCAACTTCTGGAGACTCTGACACAACAACTGGCTCTGGGACTAGAATGCGGTCAATTTTCCCCCGAGAAATTCGAGAAGTTCCGAGAGCAAATGAATCGGATAATGCAATTATCCCATTTGTTTGCTGCAAGAGATATGAGCTCAGTGGAGTACGCTTATCTTAAAATGATCTCGTTTACAACACAAGGTTAGCTTTCTGAACTGATATATTTGATTCAGGTTTGATATGAGCTTCAAAATGAGCCTAATCATGACTAGGTTTGGTGAAAATGAAATTTTCGGGCTTTTCGGGGCCTGGTGGCCTGAAAATAGATTTTTAGGCCTGACAATTTAGAAATCTAGGTTTGACAAGTTAAGAGCTTCAAAATGAGCCTAAACACGACTATATTTGAATAAAAACTGTTTTTCGGCCCAATATGGCCTGAAACGGCCTGAAAATCAAAGTCGACCAAACCTAGTCGTGTTCAGGCTCATTTTAATGCTCGTAACTTGATAAATCTAAATTTGAATATTTTGAATCGTGAAAATCTTTTCCTGAGCCGTCAGAGCTCAAAAACTAG</canonical>
            <polymorphic>TGAGCCTAAACACAAGTAGGCTCCGCCCACGTTGGGTTTCCCCGTTTGAACACGCGACGCACGACCGCGACGCACTCGAAAAATCAAAGTGGGCGTAGCCTAGGCGTGTTTGAGCTCATTTTGAAGCGCTGAACAAGACAAACACAATAATAAAAAATTCATCAGCCCAAACGCAAAACCTAGACTGCCAGGTGCAAAAGTTCGGCCATCAAAAGTTTGACCAATCCTTTTGACTGCAATATCCTCTGAAATGGGCGGAGCCTAATCGTGTTTAGACTCATTTTAAAGCTCCTGACTTGCTGAACTCAATTATCTGCATCGATTCAAACAGAAATGTGTAAAGTTTCAGAAACATCACATCGGAACAACTGCTCAAATCGAAATGGTGTGACTTGTACATCATTGCTCTGATGCAAACAGCCGACAAAATAAATTTGCCTCAACTTCTGGAGACTCTGACACAACAACTGGCTCTGGGACTAGAATGCGGTCAATTTTCMCCCGAGAAATTCGAGAAGTTCCGAGAGCAAATGAATCGGATAATGCAATTATCCCATTTGTTTGCTGCAAGAGATATGAGCTCAGTGGAGTACGCTTATCTTAAAATGATCTCGTTTACAACACAAGGTTAGCTTTCTGAACTGATATATTTGATTCAGGTTTGATATGAGCTTCAAAATGAGCCTAATCATGACTAGGTTTGGTGAAAATGAAATTTTCGGGCTTTTCGGGGCCTGGTGGCCTGAAAATAGATTTTTAGGCCTGACAATTTAGAAATCTAGGTTTGACAAGTTAAGAGCTTCAAAATGAGCCTAAACACGACTATATTTGAATAAAAACTGTTTTTCGGCCCAATATGGCCTGAAACGGCCTGAAAATCAAAGTCGACCAAACCTAGTCGTGTTCAGGCTCATTTTAATGCTCGTAACTTGATAAATCTAAATTTGAATATTTTGAATCGTGAAAATCTTTTCCTGAGCCGTCAGAGCTCAAAAACTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGACTTGTACATCATTGCTCT</pcr_primer_p1>
		<pcr_primer_p2>GAAAGCTAACCTTGTGTTGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGACTTGTACATCATTGCTCTGATGCAAACAGCCGACAAAATAAATTTGCCTCAACTTCTGGAGACTCTGACACAACAACTGGCTCTGGGACTAGAATGCGGTCAATTTTCCCCCGAGAAATTCGAGAAGTTCCGAGAGCAAATGAATCGGATAATGCAATTATCCCATTTGTTTGCTGCAAGAGATATGAGCTCAGTGGAGTACGCTTATCTTAAAATGATCTCGTTTACAACACAAGGTTAGCTTTC</canonical_amplicon>
		<polymorphic_amplicon>GTGACTTGTACATCATTGCTCTGATGCAAACAGCCGACAAAATAAATTTGCCTCAACTTCTGGAGACTCTGACACAACAACTGGCTCTGGGACTAGAATGCGGTCAATTTTCMCCCGAGAAATTCGAGAAGTTCCGAGAGCAAATGAATCGGATAATGCAATTATCCCATTTGTTTGCTGCAAGAGATATGAGCTCAGTGGAGTACGCTTATCTTAAAATGATCTCGTTTACAACACAAGGTTAGCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11434</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>23708</contig_pos>
        <strand>+</strand>
        <context>CATCGGAACA[A/G]CTGCTCAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCGATTCAAACAGAAATGTGTAAAGTTTCAGAAACATCACATCGGAACA</left_flank>
        <right_flank>CTGCTCAAATCGAAATGGTGTGACTTGTACATCATTGCTCTGATGCAAAC</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAATCGGACCATTATTGAATTTTTGAGAATAAGAAAATCACAAAATTGTAAACTACTGTAGCTTGTCTGAAAGCTGATATTGCTGAAAAACTCATACAGTTTTGGATTTGTCTACTTGAGAGCTTCAAAATGAGCCTAAACACAAGTAGGCTCCGCCCACGTTGGGTTTCCCCGTTTGAACACGCGACGCACGACCGCGACGCACTCGAAAAATCAAAGTGGGCGTAGCCTAGGCGTGTTTGAGCTCATTTTGAAGCGCTGAACAAGACAAACACAATAATAAAAAATTCATCAGCCCAAACGCAAAACCTAGACTGCCAGGTGCAAAAGTTCGGCCATCAAAAGTTTGACCAATCCTTTTGACTGCAATATCCTCTGAAATGGGCGGAGCCTAATCGTGTTTAGACTCATTTTAAAGCTCCTGACTTGCTGAACTCAATTATCTGCATCGATTCAAACAGAAATGTGTAAAGTTTCAGAAACATCACATCGGAACAACTGCTCAAATCGAAATGGTGTGACTTGTACATCATTGCTCTGATGCAAACAGCCGACAAAATAAATTTGCCTCAACTTCTGGAGACTCTGACACAACAACTGGCTCTGGGACTAGAATGCGGTCAATTTTCCCCCGAGAAATTCGAGAAGTTCCGAGAGCAAATGAATCGGATAATGCAATTATCCCATTTGTTTGCTGCAAGAGATATGAGCTCAGTGGAGTACGCTTATCTTAAAATGATCTCGTTTACAACACAAGGTTAGCTTTCTGAACTGATATATTTGATTCAGGTTTGATATGAGCTTCAAAATGAGCCTAATCATGACTAGGTTTGGTGAAAATGAAATTTTCGGGCTTTTCGGGGCCTGGTGGCCTGAAAATAGATTTTTAGGCCTGACAATTTAGAAATCTAGGTTTGACAAGTTAAGAGCTTCAAAATGAGCCTAAACACGACTATATTTGAATAAAAACTGTTTTTCGGCCCAATATGGCCTGAAAC</canonical>
            <polymorphic>TAAAATCGGACCATTATTGAATTTTTGAGAATAAGAAAATCACAAAATTGTAAACTACTGTAGCTTGTCTGAAAGCTGATATTGCTGAAAAACTCATACAGTTTTGGATTTGTCTACTTGAGAGCTTCAAAATGAGCCTAAACACAAGTAGGCTCCGCCCACGTTGGGTTTCCCCGTTTGAACACGCGACGCACGACCGCGACGCACTCGAAAAATCAAAGTGGGCGTAGCCTAGGCGTGTTTGAGCTCATTTTGAAGCGCTGAACAAGACAAACACAATAATAAAAAATTCATCAGCCCAAACGCAAAACCTAGACTGCCAGGTGCAAAAGTTCGGCCATCAAAAGTTTGACCAATCCTTTTGACTGCAATATCCTCTGAAATGGGCGGAGCCTAATCGTGTTTAGACTCATTTTAAAGCTCCTGACTTGCTGAACTCAATTATCTGCATCGATTCAAACAGAAATGTGTAAAGTTTCAGAAACATCACATCGGAACARCTGCTCAAATCGAAATGGTGTGACTTGTACATCATTGCTCTGATGCAAACAGCCGACAAAATAAATTTGCCTCAACTTCTGGAGACTCTGACACAACAACTGGCTCTGGGACTAGAATGCGGTCAATTTTCCCCCGAGAAATTCGAGAAGTTCCGAGAGCAAATGAATCGGATAATGCAATTATCCCATTTGTTTGCTGCAAGAGATATGAGCTCAGTGGAGTACGCTTATCTTAAAATGATCTCGTTTACAACACAAGGTTAGCTTTCTGAACTGATATATTTGATTCAGGTTTGATATGAGCTTCAAAATGAGCCTAATCATGACTAGGTTTGGTGAAAATGAAATTTTCGGGCTTTTCGGGGCCTGGTGGCCTGAAAATAGATTTTTAGGCCTGACAATTTAGAAATCTAGGTTTGACAAGTTAAGAGCTTCAAAATGAGCCTAAACACGACTATATTTGAATAAAAACTGTTTTTCGGCCCAATATGGCCTGAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTCTAGCAATCCAAATTC</pcr_primer_p1>
		<pcr_primer_p2>AATTTATTTTGTCGGCTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>652</pcr_amplicon_size>
		<canonical_amplicon>AACTGCTCAAATCGAAATGGTGTGACTTGTACATCATTGCTCTGATGCAAACAGCCGACAAAATAAATT</canonical_amplicon>
		<polymorphic_amplicon>ARCTGCTCAAATCGAAATGGTGTGACTTGTACATCATTGCTCTGATGCAAACAGCCGACAAAATAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11436</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>25652</contig_pos>
        <strand></strand>
        <context>AAGTGCGCTA[T/A]AATAGTCAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TAAGCCGCCAGGGGGCATTTTCAAGGCCACTCAAGTTCAAAAGTGCGCTA</left_flank>
        <right_flank>AATAGTCAATTTTGCCTCGAAAAACCTAAAATTTTTGTAGATTCTCACAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAGGTGAAATTTCAAAATGGGCAGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCGCTAAACGTAACAAACACATTGGAATAAGAGCCAACAACACAAATGCAAAACCTAGGCCGCCAGGTGCAAAAGTTGAATTTTTGAAAAATAAGAATCAAAGTTTGAAACACATGTAACTTGCCTGAAATTCGATATTTTTAGAAAAATGCTAACAGTTTTCAGTTTCTCTTGTCTAGAGCTTCAAAATGAGTATAAACACGGGTAGACTCCGCTCACTTTGAAATTTCACCTAGACACACGCGACGCACGACCGAGACGCACCCAAAAAANNNNNNNNNNNCGCACCCCAAAAAATCAAAGTTAGCAGAACCTAGTCGTGTTTGGGCTCATTTCAAAGCCAAAACTCTGCTGAGCTCGGATAGAGTGTTTTCAAGCTTTGAATTTTAGTTTCTAAGCCGCCAGGGGGCATTTTCAAGGCCACTCAAGTTCAAAAGTGCGCTATAATAGTCAATTTTGCCTCGAAAAACCTAAAATTTTTGTAGATTCTCACAAATCCTGCAACGCTTCCTTGTCTCCGTTGGTTTGATCCTCAGATAATCGTGGAAATCTTCTTTTCGGGCCTCATCGGCCCAATGTCCATTGAGACCATCATCCCGTTCGTCCTACAAATGAACCTAAACACATTTTTTGATAATCACTGCGGAGGATCGGTCAGCGGATCGTCAGACACGTTATCAACGTCTTCATTGTCAGAAATCATGAGCAATCAGTGATCTTTTAAGTTTTACAGTATTAATTTTCCCTTTTTTTTAGCCTTAAAATTTTTTCCCCGTTTTTTTTTTCTCCCAAAAATCAAAAAATGTCACAATTCCCTTTTTTTTTGAATACCTCTTCTTCTTTTTGACTTTCAAATTTCCCGCCTACTGTACATACCCCACCCCTCCCGTCTCTCTCCAAACATGTTCCTCATTTTCAGTGCTTTCAGTCTTCCCCTCCGTTTTT</canonical>
            <polymorphic>TCTAGGTGAAATTTCAAAATGGGCAGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCGCTAAACGTAACAAACACATTGGAATAAGAGCCAACAACACAAATGCAAAACCTAGGCCGCCAGGTGCAAAAGTTGAATTTTTGAAAAATAAGAATCAAAGTTTGAAACACATGTAACTTGCCTGAAATTCGATATTTTTAGAAAAATGCTAACAGTTTTCAGTTTCTCTTGTCTAGAGCTTCAAAATGAGTATAAACACGGGTAGACTCCGCTCACTTTGAAATTTCACCTAGACACACGCGACGCACGACCGAGACGCACCCAAAAAANNNNNNNNNNNCGCACCCCAAAAAATCAAAGTTAGCAGAACCTAGTCGTGTTTGGGCTCATTTCAAAGCCAAAACTCTGCTGAGCTCGGATAGAGTGTTTTCAAGCTTTGAATTTTAGTTTCTAAGCCGCCAGGGGGCATTTTCAAGGCCACTCAAGTTCAAAAGTGCGCTAWAATAGTCAATTTTGCCTCGAAAAACCTAAAATTTTTGTAGATTCTCACAAATCCTGCAACGCTTCCTTGTCTCCGTTGGTTTGATCCTCAGATAATCGTGGAAATCTTCTTTTCGGGCCTCATCGGCCCAATGTCCATTGAGACCATCATCCCGTTCGTCCTACAAATGAACCTAAACACATTTTTTGATAATCACTGCGGAGGATCGGTCAGCGGATCGTCAGACACGTTATCAACGTCTTCATTGTCAGAAATCATGAGCAATCAGTGATCTTTTAAGTTTTACAGTATTAATTTTCCCTTTTTTTTAGCCTTAAAATTTTTTCCCCGTTTTTTTTTTCTCCCAAAAATCAAAAAATGTCACAATTCCCTTTTTTTTTGAATACCTCTTCTTCTTTTTGACTTTCAAATTTCCCGCCTACTGTACATACCCCACCCCTCCCGTCTCTCTCCAAACATGTTCCTCATTTTCAGTGCTTTCAGTCTTCCCCTCCGTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAGCTTTGAATTTTAGTTTCT</pcr_primer_p1>
		<pcr_primer_p2>GTGTTTAGGTTCATTTGTAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TCAAGCTTTGAATTTTAGTTTCTAAGCCGCCAGGGGGCATTTTCAAGGCCACTCAAGTTCAAAAGTGCGCTATAATAGTCAATTTTGCCTCGAAAAACCTAAAATTTTTGTAGATTCTCACAAATCCTGCAACGCTTCCTTGTCTCCGTTGGTTTGATCCTCAGATAATCGTGGAAATCTTCTTTTCGGGCCTCATCGGCCCAATGTCCATTGAGACCATCATCCCGTTCGTCCTACAAATGAACCTAAACAC</canonical_amplicon>
		<polymorphic_amplicon>TCAAGCTTTGAATTTTAGTTTCTAAGCCGCCAGGGGGCATTTTCAAGGCCACTCAAGTTCAAAAGTGCGCTAWAATAGTCAATTTTGCCTCGAAAAACCTAAAATTTTTGTAGATTCTCACAAATCCTGCAACGCTTCCTTGTCTCCGTTGGTTTGATCCTCAGATAATCGTGGAAATCTTCTTTTCGGGCCTCATCGGCCCAATGTCCATTGAGACCATCATCCCGTTCGTCCTACAAATGAACCTAAACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11437</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>25568</contig_pos>
        <strand></strand>
        <context>gctgagctcg[G/A]atAGAGTGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AACCTAGTCGTGTTTGGGCTCATTTCAAAGCCAAAACTCTGCTGAGCTCG</left_flank>
        <right_flank>ATAGAGTGTTTTCAAGCTTTGAATTTTAGTTTCTAAGCCGCCAGGGGGCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCAAGAGCTTCAAAATGAGTATAAACACGACTAGGCTCCGCCCACTTTTGTTTTTCGGGCGCGTTGCGGTCGTGCGTCGCGTGTCTAGGTGAAATTTCAAAATGGGCAGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCGCTAAACGTAACAAACACATTGGAATAAGAGCCAACAACACAAATGCAAAACCTAGGCCGCCAGGTGCAAAAGTTGAATTTTTGAAAAATAAGAATCAAAGTTTGAAACACATGTAACTTGCCTGAAATTCGATATTTTTAGAAAAATGCTAACAGTTTTCAGTTTCTCTTGTCTAGAGCTTCAAAATGAGTATAAACACGGGTAGACTCCGCTCACTTTGAAATTTCACCTAGACACACGCGACGCACGACCGAGACGCACCCAAAAAANNNNNNNNNNNCGCACCCCAAAAAATCAAAGTTAGCAGAACCTAGTCGTGTTTGGGCTCATTTCAAAGCCAAAACTCTGCTGAGCTCGGATAGAGTGTTTTCAAGCTTTGAATTTTAGTTTCTAAGCCGCCAGGGGGCATTTTCAAGGCCACTCAAGTTCAAAAGTGCGCTATAATAGTCAATTTTGCCTCGAAAAACCTAAAATTTTTGTAGATTCTCACAAATCCTGCAACGCTTCCTTGTCTCCGTTGGTTTGATCCTCAGATAATCGTGGAAATCTTCTTTTCGGGCCTCATCGGCCCAATGTCCATTGAGACCATCATCCCGTTCGTCCTACAAATGAACCTAAACACATTTTTTGATAATCACTGCGGAGGATCGGTCAGCGGATCGTCAGACACGTTATCAACGTCTTCATTGTCAGAAATCATGAGCAATCAGTGATCTTTTAAGTTTTACAGTATTAATTTTCCCTTTTTTTTAGCCTTAAAATTTTTTCCCCGTTTTTTTTTTCTCCCAAAAATCAAAAAATGTCACAATTCCCTTTTTTTTTGAATACCTCTTCTTCTTTTTGACTTTCAAATTTCCC</canonical>
            <polymorphic>GCCAAGAGCTTCAAAATGAGTATAAACACGACTAGGCTCCGCCCACTTTTGTTTTTCGGGCGCGTTGCGGTCGTGCGTCGCGTGTCTAGGTGAAATTTCAAAATGGGCAGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCGCTAAACGTAACAAACACATTGGAATAAGAGCCAACAACACAAATGCAAAACCTAGGCCGCCAGGTGCAAAAGTTGAATTTTTGAAAAATAAGAATCAAAGTTTGAAACACATGTAACTTGCCTGAAATTCGATATTTTTAGAAAAATGCTAACAGTTTTCAGTTTCTCTTGTCTAGAGCTTCAAAATGAGTATAAACACGGGTAGACTCCGCTCACTTTGAAATTTCACCTAGACACACGCGACGCACGACCGAGACGCACCCAAAAAANNNNNNNNNNNCGCACCCCAAAAAATCAAAGTTAGCAGAACCTAGTCGTGTTTGGGCTCATTTCAAAGCCAAAACTCTGCTGAGCTCGRATAGAGTGTTTTCAAGCTTTGAATTTTAGTTTCTAAGCCGCCAGGGGGCATTTTCAAGGCCACTCAAGTTCAAAAGTGCGCTATAATAGTCAATTTTGCCTCGAAAAACCTAAAATTTTTGTAGATTCTCACAAATCCTGCAACGCTTCCTTGTCTCCGTTGGTTTGATCCTCAGATAATCGTGGAAATCTTCTTTTCGGGCCTCATCGGCCCAATGTCCATTGAGACCATCATCCCGTTCGTCCTACAAATGAACCTAAACACATTTTTTGATAATCACTGCGGAGGATCGGTCAGCGGATCGTCAGACACGTTATCAACGTCTTCATTGTCAGAAATCATGAGCAATCAGTGATCTTTTAAGTTTTACAGTATTAATTTTCCCTTTTTTTTAGCCTTAAAATTTTTTCCCCGTTTTTTTTTTCTCCCAAAAATCAAAAAATGTCACAATTCCCTTTTTTTTTGAATACCTCTTCTTCTTTTTGACTTTCAAATTTCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>499 175 166 133 27</canonical_bands>
                <polymorphic_bands>674 166 133 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAAAATGGCCTAGAAACCTC</pcr_primer_p1>
		<pcr_primer_p2>GCACTTTTGAACTTGAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>781</pcr_amplicon_size>
		<canonical_amplicon>GGATAGAGTGTTTTCAAGCTTTGAATTTTAGTTTCTAAGCCGCCAGGGGGCATTTTCAAGGCCACTCAAGTTCAAAAGTGC</canonical_amplicon>
		<polymorphic_amplicon>GRATAGAGTGTTTTCAAGCTTTGAATTTTAGTTTCTAAGCCGCCAGGGGGCATTTTCAAGGCCACTCAAGTTCAAAAGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11438</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>179093</contig_pos>
        <strand>+</strand>
        <context>AATTTCTARA[A/T]TTTTTTGCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGA</left_flank>
        <right_flank>TTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATTTTGGACCGTTTTTAGTAATTTTTTCTGGAATGTCCACTAAAAAGTGTCTATTTTCAGAATACGTCGCTCGATACGCCACCGAAAAGACGCCAGCAGACGCGCCAGCCACCAAAAAAGCGCAAGAGCCGGAAACTTTGGCCACGTGGCACGACTCGACGAGTCCCGACGACGATGATAACATATCATTGAGCAGTCTCTCAGAAATCGATCCAGATGACGTAGCGAGTTTCGAGGAGTTCGAGAAGGAGTACGATGCGAGAATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTGATTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCGACCTCAAAAAAGACGCCCCCACACAGCCCATTCATTCTGTTCATTCTGTTCATTCACACAAAACCCCCGATTTTCCCAAATTTTCAGGACACATTTTCCCGGCAATTTTGAATATTAAAATTTCAAAATTCA</canonical>
            <polymorphic>TCATTTTGGACCGTTTTTAGTAATTTTTTCTGGAATGTCCACTAAAAAGTGTCTATTTTCAGAATACGTCGCTCGATACGCCACCGAAAAGACGCCAGCAGACGCGCCAGCCACCAAAAAAGCGCAAGAGCCGGAAACTTTGGCCACGTGGCACGACTCGACGAGTCCCGACGACGATGATAACATATCATTGAGCAGTCTCTCAGAAATCGATCCAGATGACGTAGCGAGTTTCGAGGAGTTCGAGAAGGAGTACGATGCGAGAATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTGATTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAWTTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCGACCTCAAAAAAGACGCCCCCACACAGCCCATTCATTCTGTTCATTCTGTTCATTCACACAAAACCCCCGATTTTCCCAAATTTTCAGGACACATTTTCCCGGCAATTTTGAATATTAAAATTTCAAAATTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>299 249 145 121 69 40 29 25 9 8 6</canonical_bands>
                <polymorphic_bands>299 249 145 121 69 40 38 25 8 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>278 145 121 97 76 76 62 25 21 16 15 14 13 11 9 8 7 6</canonical_bands>
                <polymorphic_bands>278 145 121 97 76 76 62 25 22 21 16 15 14 11 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTCTAGAAACCACGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAACCACCAGAAAACAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>CAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTT</canonical_amplicon>
		<polymorphic_amplicon>CAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAWTTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11439</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>179091</contig_pos>
        <strand>+</strand>
        <context>GRAATTTCTA[A/G]AWTTTTTTGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTA</left_flank>
        <right_flank>AATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTCATTTTGGACCGTTTTTAGTAATTTTTTCTGGAATGTCCACTAAAAAGTGTCTATTTTCAGAATACGTCGCTCGATACGCCACCGAAAAGACGCCAGCAGACGCGCCAGCCACCAAAAAAGCGCAAGAGCCGGAAACTTTGGCCACGTGGCACGACTCGACGAGTCCCGACGACGATGATAACATATCATTGAGCAGTCTCTCAGAAATCGATCCAGATGACGTAGCGAGTTTCGAGGAGTTCGAGAAGGAGTACGATGCGAGAATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTGATTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCGACCTCAAAAAAGACGCCCCCACACAGCCCATTCATTCTGTTCATTCTGTTCATTCACACAAAACCCCCGATTTTCCCAAATTTTCAGGACACATTTTCCCGGCAATTTTGAATATTAAAATTTCAAAATT</canonical>
            <polymorphic>GCTCATTTTGGACCGTTTTTAGTAATTTTTTCTGGAATGTCCACTAAAAAGTGTCTATTTTCAGAATACGTCGCTCGATACGCCACCGAAAAGACGCCAGCAGACGCGCCAGCCACCAAAAAAGCGCAAGAGCCGGAAACTTTGGCCACGTGGCACGACTCGACGAGTCCCGACGACGATGATAACATATCATTGAGCAGTCTCTCAGAAATCGATCCAGATGACGTAGCGAGTTTCGAGGAGTTCGAGAAGGAGTACGATGCGAGAATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTGATTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTARAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCGACCTCAAAAAAGACGCCCCCACACAGCCCATTCATTCTGTTCATTCTGTTCATTCACACAAAACCCCCGATTTTCCCAAATTTTCAGGACACATTTTCCCGGCAATTTTGAATATTAAAATTTCAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>301 249 145 121 69 40 29 25 12 9</canonical_bands>
                <polymorphic_bands>301 249 145 121 69 40 38 25 12</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>334 205 79 66 57 50 37 37 30 25 24 20 14 13 9</canonical_bands>
                <polymorphic_bands>334 205 79 79 57 50 37 37 30 25 24 20 14 9</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>140 137 137 117 88 82 74 48 46 45 32 29 23 2</canonical_bands>
                <polymorphic_bands>257 137 137 88 82 74 48 46 45 32 29 23 2</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>333 298 206 117 46</canonical_bands>
                <polymorphic_bands>415 333 206 46</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTCTAGAAACCACGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAACCACCAGAAAACAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>CAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTT</canonical_amplicon>
		<polymorphic_amplicon>CAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTARAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11440</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>179082</contig_pos>
        <strand>+</strand>
        <context>TTTCTAGGGG[A/G]AATTTCTARA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGG</left_flank>
        <right_flank>AATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTATCTCGGCTCATTTTGGACCGTTTTTAGTAATTTTTTCTGGAATGTCCACTAAAAAGTGTCTATTTTCAGAATACGTCGCTCGATACGCCACCGAAAAGACGCCAGCAGACGCGCCAGCCACCAAAAAAGCGCAAGAGCCGGAAACTTTGGCCACGTGGCACGACTCGACGAGTCCCGACGACGATGATAACATATCATTGAGCAGTCTCTCAGAAATCGATCCAGATGACGTAGCGAGTTTCGAGGAGTTCGAGAAGGAGTACGATGCGAGAATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTGATTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCGACCTCAAAAAAGACGCCCCCACACAGCCCATTCATTCTGTTCATTCTGTTCATTCACACAAAACCCCCGATTTTCCCAAATTTTCAGGACACATTTTCCCGGCAATTTTGAATATTAAAAT</canonical>
            <polymorphic>CGTATCTCGGCTCATTTTGGACCGTTTTTAGTAATTTTTTCTGGAATGTCCACTAAAAAGTGTCTATTTTCAGAATACGTCGCTCGATACGCCACCGAAAAGACGCCAGCAGACGCGCCAGCCACCAAAAAAGCGCAAGAGCCGGAAACTTTGGCCACGTGGCACGACTCGACGAGTCCCGACGACGATGATAACATATCATTGAGCAGTCTCTCAGAAATCGATCCAGATGACGTAGCGAGTTTCGAGGAGTTCGAGAAGGAGTACGATGCGAGAATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTGATTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGRAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCGACCTCAAAAAAGACGCCCCCACACAGCCCATTCATTCTGTTCATTCTGTTCATTCACACAAAACCCCCGATTTTCCCAAATTTTCAGGACACATTTTCCCGGCAATTTTGAATATTAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>310 249 145 121 69 43 29 25 9</canonical_bands>
                <polymorphic_bands>310 249 145 130 69 43 29 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTCTAGAAACCACGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAACCACCAGAAAACAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>CAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTT</canonical_amplicon>
		<polymorphic_amplicon>CAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGRAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11441</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>179051</contig_pos>
        <strand>+</strand>
        <context>CGGCCAGCAT[A/G]GTTTCAGCCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCAT</left_flank>
        <right_flank>GTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTTTCTAGGCCACCAGAGACTATTTTAGGCGTATCTCGGCTCATTTTGGACCGTTTTTAGTAATTTTTTCTGGAATGTCCACTAAAAAGTGTCTATTTTCAGAATACGTCGCTCGATACGCCACCGAAAAGACGCCAGCAGACGCGCCAGCCACCAAAAAAGCGCAAGAGCCGGAAACTTTGGCCACGTGGCACGACTCGACGAGTCCCGACGACGATGATAACATATCATTGAGCAGTCTCTCAGAAATCGATCCAGATGACGTAGCGAGTTTCGAGGAGTTCGAGAAGGAGTACGATGCGAGAATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTGATTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCGACCTCAAAAAAGACGCCCCCACACAGCCCATTCATTCTGTTCATTCTGTTCATTCACACAAAACCCCCGATTTTCCCAAATTTTCAGGAC</canonical>
            <polymorphic>GGTTTTCTAGGCCACCAGAGACTATTTTAGGCGTATCTCGGCTCATTTTGGACCGTTTTTAGTAATTTTTTCTGGAATGTCCACTAAAAAGTGTCTATTTTCAGAATACGTCGCTCGATACGCCACCGAAAAGACGCCAGCAGACGCGCCAGCCACCAAAAAAGCGCAAGAGCCGGAAACTTTGGCCACGTGGCACGACTCGACGAGTCCCGACGACGATGATAACATATCATTGAGCAGTCTCTCAGAAATCGATCCAGATGACGTAGCGAGTTTCGAGGAGTTCGAGAAGGAGTACGATGCGAGAATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTGATTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATRGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCGACCTCAAAAAAGACGCCCCCACACAGCCCATTCATTCTGTTCATTCTGTTCATTCACACAAAACCCCCGATTTTCCCAAATTTTCAGGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>497 253 250</canonical_bands>
                <polymorphic_bands>747 253</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTCTAGAAACCACGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAACCACCAGAAAACAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>CAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTT</canonical_amplicon>
		<polymorphic_amplicon>CAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATRGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11442</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>179284</contig_pos>
        <strand>+</strand>
        <context>TGAGCCTACC[A/T]CTTGGTGGCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACC</left_flank>
        <right_flank>CTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGCAGTCTCTCAGAAATCGATCCAGATGACGTAGCGAGTTTCGAGGAGTTCGAGAAGGAGTACGATGCGAGAATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTGATTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCGACCTCAAAAAAGACGCCCCCACACAGCCCATTCATTCTGTTCATTCTGTTCATTCACACAAAACCCCCGATTTTCCCAAATTTTCAGGACACATTTTCCCGGCAATTTTGAATATTAAAATTTCAAAATTCATATCGTTTATTCGATTTTTCTCCGATTTTCTTTCTTTCTTCAAATCCCGATTTTTTGAATTCTCTGTCTATAAATGTAGAAAAACCCCGCTTTTCTTTGTATGTTTCTGTAAAAAACCCGATTTTTTCGCTTTTTTCGCATTTTCCACTAGTTTTTGTACATAATAAAGGCTTTTTTCCATGCATCTGAAA</canonical>
            <polymorphic>TGAGCAGTCTCTCAGAAATCGATCCAGATGACGTAGCGAGTTTCGAGGAGTTCGAGAAGGAGTACGATGCGAGAATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTGATTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCWCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCGACCTCAAAAAAGACGCCCCCACACAGCCCATTCATTCTGTTCATTCTGTTCATTCACACAAAACCCCCGATTTTCCCAAATTTTCAGGACACATTTTCCCGGCAATTTTGAATATTAAAATTTCAAAATTCATATCGTTTATTCGATTTTTCTCCGATTTTCTTTCTTTCTTCAAATCCCGATTTTTTGAATTCTCTGTCTATAAATGTAGAAAAACCCCGCTTTTCTTTGTATGTTTCTGTAAAAAACCCGATTTTTTCGCTTTTTTCGCATTTTCCACTAGTTTTTGTACATAATAAAGGCTTTTTTCCATGCATCTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGTTTTTCTCGAGATTTGT</pcr_primer_p1>
		<pcr_primer_p2>CGAAAATGGGTAGTTTAGAGATT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCG</canonical_amplicon>
		<polymorphic_amplicon>GTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCWCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11443</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>179249</contig_pos>
        <strand>+</strand>
        <context>TTGCAATTTT[A/T]TGAAGCAGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTT</left_flank>
        <right_flank>TGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGACGAGTCCCGACGACGATGATAACATATCATTGAGCAGTCTCTCAGAAATCGATCCAGATGACGTAGCGAGTTTCGAGGAGTTCGAGAAGGAGTACGATGCGAGAATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTGATTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCGACCTCAAAAAAGACGCCCCCACACAGCCCATTCATTCTGTTCATTCTGTTCATTCACACAAAACCCCCGATTTTCCCAAATTTTCAGGACACATTTTCCCGGCAATTTTGAATATTAAAATTTCAAAATTCATATCGTTTATTCGATTTTTCTCCGATTTTCTTTCTTTCTTCAAATCCCGATTTTTTGAATTCTCTGTCTATAAATGTAGAAAAACCCCGCTTTTCTTTGTATGTTTCTGTAAAAAACCCGATTTTTTCGCTTTTTTCGCATTTTCCACTAGTTTTT</canonical>
            <polymorphic>CTCGACGAGTCCCGACGACGATGATAACATATCATTGAGCAGTCTCTCAGAAATCGATCCAGATGACGTAGCGAGTTTCGAGGAGTTCGAGAAGGAGTACGATGCGAGAATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTGATTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTTWTGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCGACCTCAAAAAAGACGCCCCCACACAGCCCATTCATTCTGTTCATTCTGTTCATTCACACAAAACCCCCGATTTTCCCAAATTTTCAGGACACATTTTCCCGGCAATTTTGAATATTAAAATTTCAAAATTCATATCGTTTATTCGATTTTTCTCCGATTTTCTTTCTTTCTTCAAATCCCGATTTTTTGAATTCTCTGTCTATAAATGTAGAAAAACCCCGCTTTTCTTTGTATGTTTCTGTAAAAAACCCGATTTTTTCGCTTTTTTCGCATTTTCCACTAGTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTCTAGGCCACCAAAACT</pcr_primer_p1>
		<pcr_primer_p2>GCGAAATTTCAGTCTAGAACC</pcr_primer_p2>
		<pcr_amplicon_size>382</pcr_amplicon_size>
		<canonical_amplicon>GTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGC</canonical_amplicon>
		<polymorphic_amplicon>GTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTTWTGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11444</snp_id>
        <super_contig>c005701729.Contig1</super_contig>
        <contig_pos>85225</contig_pos>
        <strand>+</strand>
        <context>ATTTTATTGT[A/C]TTTTTTAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGCTTGTTTTCAAATTCAAATTGTTTTCAAAAAGTTTGGAATTTTATTGT</left_flank>
        <right_flank>TTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCACAACTCACATCATTCAGAATACAGCTTTTCAGCGCTGTATAGCTGGATTTCAGAATTTCAGCCAAGTTTCTGAAAAAATATTTTTTTTTCAATTTTTTGATTTTCTCACTTTTTACAAGTACTTTCATTGCAATTTTCGATAGAAATTCTGTTGAAAAGTGCCTTAAAATCCGTATAAGAGATCAAATCTGGTCCATATTTCCGGCAAATCGTCTGATAAGAGTTTTCAGGCGATTTCCAGTGGAAAGTGTCATATAATATGCAAGTTTCAATGAAAAAATCGAAATTTTCGGTCATTTTTTACCTGAAAATGGCGAAAAAATCATGAAAATTGATGGAAAATGAAGGAAAATCGGCGAAAAATGAAAAAAAAAACAAAATTTTCTACAGTAACCCAAACTAATATTTTTATAATGATGTTTTTTGTCGTTTTCAGTGAAATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAAAAGTTTGGAATTTTATTGTATTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATTAAAAAAAACGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGCAGCCCAATTTTCAAATTGCCGCCGCTCCGCCGAAACCAAAAAATCAGAAAAAGCGTCAGCAACGAGTGCCAGATGAGATTCGAAAACTTCAGGCGTCGACACAGCTGATTTTTCCAAAATCCAGATTTCGAAAAATCGTCAAAGAGCTTCTTCAGGAC</canonical>
            <polymorphic>CCCACAACTCACATCATTCAGAATACAGCTTTTCAGCGCTGTATAGCTGGATTTCAGAATTTCAGCCAAGTTTCTGAAAAAATATTTTTTTTTCAATTTTTTGATTTTCTCACTTTTTACAAGTACTTTCATTGCAATTTTCGATAGAAATTCTGTTGAAAAGTGCCTTAAAATCCGTATAAGAGATCAAATCTGGTCCATATTTCCGGCAAATCGTCTGATAAGAGTTTTCAGGCGATTTCCAGTGGAAAGTGTCATATAATATGCAAGTTTCAATGAAAAAATCGAAATTTTCGGTCATTTTTTACCTGAAAATGGCGAAAAAATCATGAAAATTGATGGAAAATGAAGGAAAATCGGCGAAAAATGAAAAAAAAAACAAAATTTTCTACAGTAACCCAAACTAATATTTTTATAATGATGTTTTTTGTCGTTTTCAGTGAAATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAAAAGTTTGGAATTTTATTGTMTTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATTAAAAAAAACGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGCAGCCCAATTTTCAAATTGCCGCCGCTCCGCCGAAACCAAAAAATCAGAAAAAGCGTCAGCAACGAGTGCCAGATGAGATTCGAAAACTTCAGGCGTCGACACAGCTGATTTTTCCAAAATCCAGATTTCGAAAAATCGTCAAAGAGCTTCTTCAGGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTTTCTACAGTAACCCAAAC</pcr_primer_p1>
		<pcr_primer_p2>CGCAGAGCTTAAAGTTGTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAATTTTCTACAGTAACCCAAACTAATATTTTTATAATGATGTTTTTTGTCGTTTTCAGTGAAATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAAAAGTTTGGAATTTTATTGTATTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATTAAAAAAAACGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCG</canonical_amplicon>
		<polymorphic_amplicon>AAAATTTTCTACAGTAACCCAAACTAATATTTTTATAATGATGTTTTTTGTCGTTTTCAGTGAAATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAAAAGTTTGGAATTTTATTGTMTTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATTAAAAAAAACGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11446</snp_id>
        <super_contig>c005701729.Contig1</super_contig>
        <contig_pos>85297</contig_pos>
        <strand></strand>
        <context>GGCTAAAAAT[T/A]AAAAAAAWCG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAAT</left_flank>
        <right_flank>AAAAAAAACGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGAAAAAATATTTTTTTTTCAATTTTTTGATTTTCTCACTTTTTACAAGTACTTTCATTGCAATTTTCGATAGAAATTCTGTTGAAAAGTGCCTTAAAATCCGTATAAGAGATCAAATCTGGTCCATATTTCCGGCAAATCGTCTGATAAGAGTTTTCAGGCGATTTCCAGTGGAAAGTGTCATATAATATGCAAGTTTCAATGAAAAAATCGAAATTTTCGGTCATTTTTTACCTGAAAATGGCGAAAAAATCATGAAAATTGATGGAAAATGAAGGAAAATCGGCGAAAAATGAAAAAAAAAACAAAATTTTCTACAGTAACCCAAACTAATATTTTTATAATGATGTTTTTTGTCGTTTTCAGTGAAATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAAAAGTTTGGAATTTTATTGTATTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATTAAAAAAAACGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGCAGCCCAATTTTCAAATTGCCGCCGCTCCGCCGAAACCAAAAAATCAGAAAAAGCGTCAGCAACGAGTGCCAGATGAGATTCGAAAACTTCAGGCGTCGACACAGCTGATTTTTCCAAAATCCAGATTTCGAAAAATCGTCAAAGAGCTTCTTCAGGACTATTTGACACCGTTGCAAGTGGCCGATGAGGCTGTTGACGCGCTTCAGGTGAGGATTGGCTTGGCGCGAAAT</canonical>
            <polymorphic>TCTGAAAAAATATTTTTTTTTCAATTTTTTGATTTTCTCACTTTTTACAAGTACTTTCATTGCAATTTTCGATAGAAATTCTGTTGAAAAGTGCCTTAAAATCCGTATAAGAGATCAAATCTGGTCCATATTTCCGGCAAATCGTCTGATAAGAGTTTTCAGGCGATTTCCAGTGGAAAGTGTCATATAATATGCAAGTTTCAATGAAAAAATCGAAATTTTCGGTCATTTTTTACCTGAAAATGGCGAAAAAATCATGAAAATTGATGGAAAATGAAGGAAAATCGGCGAAAAATGAAAAAAAAAACAAAATTTTCTACAGTAACCCAAACTAATATTTTTATAATGATGTTTTTTGTCGTTTTCAGTGAAATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAAAAGTTTGGAATTTTATTGTATTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATWAAAAAAAACGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGCAGCCCAATTTTCAAATTGCCGCCGCTCCGCCGAAACCAAAAAATCAGAAAAAGCGTCAGCAACGAGTGCCAGATGAGATTCGAAAACTTCAGGCGTCGACACAGCTGATTTTTCCAAAATCCAGATTTCGAAAAATCGTCAAAGAGCTTCTTCAGGACTATTTGACACCGTTGCAAGTGGCCGATGAGGCTGTTGACGCGCTTCAGGTGAGGATTGGCTTGGCGCGAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>337 336 105 96 66 45 15</canonical_bands>
                <polymorphic_bands>337 336 111 105 96 15</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>217 140 91 88 70 61 49 46 45 41 34 22 21 18 15 15 13 8 6</canonical_bands>
                <polymorphic_bands>217 140 137 88 70 61 49 45 41 34 22 21 18 15 15 13 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTTTCTACAGTAACCCAAAC</pcr_primer_p1>
		<pcr_primer_p2>CGCAGAGCTTAAAGTTGTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAATTTTCTACAGTAACCCAAACTAATATTTTTATAATGATGTTTTTTGTCGTTTTCAGTGAAATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAAAAGTTTGGAATTTTATTGTATTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATTAAAAAAAACGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCG</canonical_amplicon>
		<polymorphic_amplicon>AAAATTTTCTACAGTAACCCAAACTAATATTTTTATAATGATGTTTTTTGTCGTTTTCAGTGAAATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAAAAGTTTGGAATTTTATTGTATTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATWAAAAAAAACGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11447</snp_id>
        <super_contig>c005701729.Contig1</super_contig>
        <contig_pos>85476</contig_pos>
        <strand>+</strand>
        <context>GCTTCAGAAT[C/T]ATGACACARC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAAT</left_flank>
        <right_flank>ATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGTTATAATCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGTCATATAATATGCAAGTTTCAATGAAAAAATCGAAATTTTCGGTCATTTTTTACCTGAAAATGGCGAAAAAATCATGAAAATTGATGGAAAATGAAGGAAAATCGGCGAAAAATGAAAAAAAAAACAAAATTTTCTACAGTAACCCAAACTAATATTTTTATAATGATGTTTTTTGTCGTTTTCAGTGAAATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAAAAGTTTGGAATTTTATTGTATTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATTAAAAAAAACGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGCAGCCCAATTTTCAAATTGCCGCCGCTCCGCCGAAACCAAAAAATCAGAAAAAGCGTCAGCAACGAGTGCCAGATGAGATTCGAAAACTTCAGGCGTCGACACAGCTGATTTTTCCAAAATCCAGATTTCGAAAAATCGTCAAAGAGCTTCTTCAGGACTATTTGACACCGTTGCAAGTGGCCGATGAGGCTGTTGACGCGCTTCAGGTGAGGATTGGCTTGGCGCGAAATTTGAAATTTTCGAAAAAAAAATTTTTGATATTTTTTTCAGTTCGCCGCTGAAGGATACCTTGTGAAGCTGTTCAAACAAACCAACAAATTGACGATCCGTTCTGGTCGAAAAACCATCAAGAAGGAAGACTTGCAGCTGGTTTTGGACTTGCTCGGAGGAGAAAATGACTAGAAAATTC</canonical>
            <polymorphic>GTGTCATATAATATGCAAGTTTCAATGAAAAAATCGAAATTTTCGGTCATTTTTTACCTGAAAATGGCGAAAAAATCATGAAAATTGATGGAAAATGAAGGAAAATCGGCGAAAAATGAAAAAAAAAACAAAATTTTCTACAGTAACCCAAACTAATATTTTTATAATGATGTTTTTTGTCGTTTTCAGTGAAATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAAAAGTTTGGAATTTTATTGTATTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATTAAAAAAAACGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATYATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGCAGCCCAATTTTCAAATTGCCGCCGCTCCGCCGAAACCAAAAAATCAGAAAAAGCGTCAGCAACGAGTGCCAGATGAGATTCGAAAACTTCAGGCGTCGACACAGCTGATTTTTCCAAAATCCAGATTTCGAAAAATCGTCAAAGAGCTTCTTCAGGACTATTTGACACCGTTGCAAGTGGCCGATGAGGCTGTTGACGCGCTTCAGGTGAGGATTGGCTTGGCGCGAAATTTGAAATTTTCGAAAAAAAAATTTTTGATATTTTTTTCAGTTCGCCGCTGAAGGATACCTTGTGAAGCTGTTCAAACAAACCAACAAATTGACGATCCGTTCTGGTCGAAAAACCATCAAGAAGGAAGACTTGCAGCTGGTTTTGGACTTGCTCGGAGGAGAAAATGACTAGAAAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>214 91 88 88 70 67 61 49 46 45 37 34 21 18 15 15 15 8 7 6 5</canonical_bands>
                <polymorphic_bands>214 158 91 88 67 61 49 46 45 37 34 21 18 15 15 15 8 7 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCATTTACAACTTTAAGCTCTG</pcr_primer_p1>
		<pcr_primer_p2>GCATCGAATTGTTATTATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGC</canonical_amplicon>
		<polymorphic_amplicon>TCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATYATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11448</snp_id>
        <super_contig>c005701729.Contig1</super_contig>
        <contig_pos>85485</contig_pos>
        <strand>+</strand>
        <context>TYATGACACA[A/G]CGTCGGAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACA</left_flank>
        <right_flank>CGTCGGAATCCGCACATATTGCCCAGGAGAAGTTATAATCACAAGCCGCC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATATGCAAGTTTCAATGAAAAAATCGAAATTTTCGGTCATTTTTTACCTGAAAATGGCGAAAAAATCATGAAAATTGATGGAAAATGAAGGAAAATCGGCGAAAAATGAAAAAAAAAACAAAATTTTCTACAGTAACCCAAACTAATATTTTTATAATGATGTTTTTTGTCGTTTTCAGTGAAATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAAAAGTTTGGAATTTTATTGTATTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATTAAAAAAAACGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGCAGCCCAATTTTCAAATTGCCGCCGCTCCGCCGAAACCAAAAAATCAGAAAAAGCGTCAGCAACGAGTGCCAGATGAGATTCGAAAACTTCAGGCGTCGACACAGCTGATTTTTCCAAAATCCAGATTTCGAAAAATCGTCAAAGAGCTTCTTCAGGACTATTTGACACCGTTGCAAGTGGCCGATGAGGCTGTTGACGCGCTTCAGGTGAGGATTGGCTTGGCGCGAAATTTGAAATTTTCGAAAAAAAAATTTTTGATATTTTTTTCAGTTCGCCGCTGAAGGATACCTTGTGAAGCTGTTCAAACAAACCAACAAATTGACGATCCGTTCTGGTCGAAAAACCATCAAGAAGGAAGACTTGCAGCTGGTTTTGGACTTGCTCGGAGGAGAAAATGACTAGAAAATTCTGGAAATTT</canonical>
            <polymorphic>AATATGCAAGTTTCAATGAAAAAATCGAAATTTTCGGTCATTTTTTACCTGAAAATGGCGAAAAAATCATGAAAATTGATGGAAAATGAAGGAAAATCGGCGAAAAATGAAAAAAAAAACAAAATTTTCTACAGTAACCCAAACTAATATTTTTATAATGATGTTTTTTGTCGTTTTCAGTGAAATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAAAAGTTTGGAATTTTATTGTATTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATTAAAAAAAACGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACARCGTCGGAATCCGCACATATTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGCAGCCCAATTTTCAAATTGCCGCCGCTCCGCCGAAACCAAAAAATCAGAAAAAGCGTCAGCAACGAGTGCCAGATGAGATTCGAAAACTTCAGGCGTCGACACAGCTGATTTTTCCAAAATCCAGATTTCGAAAAATCGTCAAAGAGCTTCTTCAGGACTATTTGACACCGTTGCAAGTGGCCGATGAGGCTGTTGACGCGCTTCAGGTGAGGATTGGCTTGGCGCGAAATTTGAAATTTTCGAAAAAAAAATTTTTGATATTTTTTTCAGTTCGCCGCTGAAGGATACCTTGTGAAGCTGTTCAAACAAACCAACAAATTGACGATCCGTTCTGGTCGAAAAACCATCAAGAAGGAAGACTTGCAGCTGGTTTTGGACTTGCTCGGAGGAGAAAATGACTAGAAAATTCTGGAAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCATTTACAACTTTAAGCTCTG</pcr_primer_p1>
		<pcr_primer_p2>GCATCGAATTGTTATTATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGC</canonical_amplicon>
		<polymorphic_amplicon>TCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACARCGTCGGAATCCGCACATATTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11449</snp_id>
        <super_contig>c005701729.Contig1</super_contig>
        <contig_pos>85503</contig_pos>
        <strand>+</strand>
        <context>ATCCGCACAT[A/G]TTSCCCAGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACAT</left_flank>
        <right_flank>TTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAATCGAAATTTTCGGTCATTTTTTACCTGAAAATGGCGAAAAAATCATGAAAATTGATGGAAAATGAAGGAAAATCGGCGAAAAATGAAAAAAAAAACAAAATTTTCTACAGTAACCCAAACTAATATTTTTATAATGATGTTTTTTGTCGTTTTCAGTGAAATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAAAAGTTTGGAATTTTATTGTATTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATTAAAAAAAACGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGCAGCCCAATTTTCAAATTGCCGCCGCTCCGCCGAAACCAAAAAATCAGAAAAAGCGTCAGCAACGAGTGCCAGATGAGATTCGAAAACTTCAGGCGTCGACACAGCTGATTTTTCCAAAATCCAGATTTCGAAAAATCGTCAAAGAGCTTCTTCAGGACTATTTGACACCGTTGCAAGTGGCCGATGAGGCTGTTGACGCGCTTCAGGTGAGGATTGGCTTGGCGCGAAATTTGAAATTTTCGAAAAAAAAATTTTTGATATTTTTTTCAGTTCGCCGCTGAAGGATACCTTGTGAAGCTGTTCAAACAAACCAACAAATTGACGATCCGTTCTGGTCGAAAAACCATCAAGAAGGAAGACTTGCAGCTGGTTTTGGACTTGCTCGGAGGAGAAAATGACTAGAAAATTCTGGAAATTTTAAATTTTTACGGTTAAA</canonical>
            <polymorphic>AAAAAATCGAAATTTTCGGTCATTTTTTACCTGAAAATGGCGAAAAAATCATGAAAATTGATGGAAAATGAAGGAAAATCGGCGAAAAATGAAAAAAAAAACAAAATTTTCTACAGTAACCCAAACTAATATTTTTATAATGATGTTTTTTGTCGTTTTCAGTGAAATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAAAAGTTTGGAATTTTATTGTATTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATTAAAAAAAACGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATRTTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGCAGCCCAATTTTCAAATTGCCGCCGCTCCGCCGAAACCAAAAAATCAGAAAAAGCGTCAGCAACGAGTGCCAGATGAGATTCGAAAACTTCAGGCGTCGACACAGCTGATTTTTCCAAAATCCAGATTTCGAAAAATCGTCAAAGAGCTTCTTCAGGACTATTTGACACCGTTGCAAGTGGCCGATGAGGCTGTTGACGCGCTTCAGGTGAGGATTGGCTTGGCGCGAAATTTGAAATTTTCGAAAAAAAAATTTTTGATATTTTTTTCAGTTCGCCGCTGAAGGATACCTTGTGAAGCTGTTCAAACAAACCAACAAATTGACGATCCGTTCTGGTCGAAAAACCATCAAGAAGGAAGACTTGCAGCTGGTTTTGGACTTGCTCGGAGGAGAAAATGACTAGAAAATTCTGGAAATTTTAAATTTTTACGGTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCATTTACAACTTTAAGCTCTG</pcr_primer_p1>
		<pcr_primer_p2>GCATCGAATTGTTATTATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGC</canonical_amplicon>
		<polymorphic_amplicon>TCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATRTTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11450</snp_id>
        <super_contig>c005701729.Contig1</super_contig>
        <contig_pos>85506</contig_pos>
        <strand>+</strand>
        <context>CGCACATRTT[C/G]CCCAGGAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATT</left_flank>
        <right_flank>CCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATCGAAATTTTCGGTCATTTTTTACCTGAAAATGGCGAAAAAATCATGAAAATTGATGGAAAATGAAGGAAAATCGGCGAAAAATGAAAAAAAAAACAAAATTTTCTACAGTAACCCAAACTAATATTTTTATAATGATGTTTTTTGTCGTTTTCAGTGAAATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAAAAGTTTGGAATTTTATTGTATTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATTAAAAAAAACGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGCAGCCCAATTTTCAAATTGCCGCCGCTCCGCCGAAACCAAAAAATCAGAAAAAGCGTCAGCAACGAGTGCCAGATGAGATTCGAAAACTTCAGGCGTCGACACAGCTGATTTTTCCAAAATCCAGATTTCGAAAAATCGTCAAAGAGCTTCTTCAGGACTATTTGACACCGTTGCAAGTGGCCGATGAGGCTGTTGACGCGCTTCAGGTGAGGATTGGCTTGGCGCGAAATTTGAAATTTTCGAAAAAAAAATTTTTGATATTTTTTTCAGTTCGCCGCTGAAGGATACCTTGTGAAGCTGTTCAAACAAACCAACAAATTGACGATCCGTTCTGGTCGAAAAACCATCAAGAAGGAAGACTTGCAGCTGGTTTTGGACTTGCTCGGAGGAGAAAATGACTAGAAAATTCTGGAAATTTTAAATTTTTACGGTTAAAATT</canonical>
            <polymorphic>AAATCGAAATTTTCGGTCATTTTTTACCTGAAAATGGCGAAAAAATCATGAAAATTGATGGAAAATGAAGGAAAATCGGCGAAAAATGAAAAAAAAAACAAAATTTTCTACAGTAACCCAAACTAATATTTTTATAATGATGTTTTTTGTCGTTTTCAGTGAAATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAAAAGTTTGGAATTTTATTGTATTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATTAAAAAAAACGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATTSCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGCAGCCCAATTTTCAAATTGCCGCCGCTCCGCCGAAACCAAAAAATCAGAAAAAGCGTCAGCAACGAGTGCCAGATGAGATTCGAAAACTTCAGGCGTCGACACAGCTGATTTTTCCAAAATCCAGATTTCGAAAAATCGTCAAAGAGCTTCTTCAGGACTATTTGACACCGTTGCAAGTGGCCGATGAGGCTGTTGACGCGCTTCAGGTGAGGATTGGCTTGGCGCGAAATTTGAAATTTTCGAAAAAAAAATTTTTGATATTTTTTTCAGTTCGCCGCTGAAGGATACCTTGTGAAGCTGTTCAAACAAACCAACAAATTGACGATCCGTTCTGGTCGAAAAACCATCAAGAAGGAAGACTTGCAGCTGGTTTTGGACTTGCTCGGAGGAGAAAATGACTAGAAAATTCTGGAAATTTTAAATTTTTACGGTTAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCANNNNNTGC</site>
                <isoschizomers>
                    <enzyme>ApaBI</enzyme>
                    <enzyme>BstAPI</enzyme>
                </isoschizomers>
                <canonical_bands>498 373 129</canonical_bands>
                <polymorphic_bands>627 373</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>497 253 129 121</canonical_bands>
                <polymorphic_bands>626 253 121</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCATTTACAACTTTAAGCTCTG</pcr_primer_p1>
		<pcr_primer_p2>GCATCGAATTGTTATTATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGC</canonical_amplicon>
		<polymorphic_amplicon>TCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATTSCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11451</snp_id>
        <super_contig>c005701729.Contig1</super_contig>
        <contig_pos>85518</contig_pos>
        <strand>+</strand>
        <context>CCAGGAGAAG[C/T]YATAATCACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAGAATTATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAG</left_flank>
        <right_flank>TATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGGTCATTTTTTACCTGAAAATGGCGAAAAAATCATGAAAATTGATGGAAAATGAAGGAAAATCGGCGAAAAATGAAAAAAAAAACAAAATTTTCTACAGTAACCCAAACTAATATTTTTATAATGATGTTTTTTGTCGTTTTCAGTGAAATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAAAAGTTTGGAATTTTATTGTATTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATTAAAAAAAACGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGCAGCCCAATTTTCAAATTGCCGCCGCTCCGCCGAAACCAAAAAATCAGAAAAAGCGTCAGCAACGAGTGCCAGATGAGATTCGAAAACTTCAGGCGTCGACACAGCTGATTTTTCCAAAATCCAGATTTCGAAAAATCGTCAAAGAGCTTCTTCAGGACTATTTGACACCGTTGCAAGTGGCCGATGAGGCTGTTGACGCGCTTCAGGTGAGGATTGGCTTGGCGCGAAATTTGAAATTTTCGAAAAAAAAATTTTTGATATTTTTTTCAGTTCGCCGCTGAAGGATACCTTGTGAAGCTGTTCAAACAAACCAACAAATTGACGATCCGTTCTGGTCGAAAAACCATCAAGAAGGAAGACTTGCAGCTGGTTTTGGACTTGCTCGGAGGAGAAAATGACTAGAAAATTCTGGAAATTTTAAATTTTTACGGTTAAAATTATGTATTTTTGC</canonical>
            <polymorphic>TCGGTCATTTTTTACCTGAAAATGGCGAAAAAATCATGAAAATTGATGGAAAATGAAGGAAAATCGGCGAAAAATGAAAAAAAAAACAAAATTTTCTACAGTAACCCAAACTAATATTTTTATAATGATGTTTTTTGTCGTTTTCAGTGAAATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAAAAGTTTGGAATTTTATTGTATTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATTAAAAAAAACGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGYTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGCAGCCCAATTTTCAAATTGCCGCCGCTCCGCCGAAACCAAAAAATCAGAAAAAGCGTCAGCAACGAGTGCCAGATGAGATTCGAAAACTTCAGGCGTCGACACAGCTGATTTTTCCAAAATCCAGATTTCGAAAAATCGTCAAAGAGCTTCTTCAGGACTATTTGACACCGTTGCAAGTGGCCGATGAGGCTGTTGACGCGCTTCAGGTGAGGATTGGCTTGGCGCGAAATTTGAAATTTTCGAAAAAAAAATTTTTGATATTTTTTTCAGTTCGCCGCTGAAGGATACCTTGTGAAGCTGTTCAAACAAACCAACAAATTGACGATCCGTTCTGGTCGAAAAACCATCAAGAAGGAAGACTTGCAGCTGGTTTTGGACTTGCTCGGAGGAGAAAATGACTAGAAAATTCTGGAAATTTTAAATTTTTACGGTTAAAATTATGTATTTTTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>498 380 122</canonical_bands>
                <polymorphic_bands>878 122</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCATTTACAACTTTAAGCTCTG</pcr_primer_p1>
		<pcr_primer_p2>GCTGCATCGAATTGTTATTAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGCAGC</canonical_amplicon>
		<polymorphic_amplicon>TCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGYTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11452</snp_id>
        <super_contig>c005701729.Contig1</super_contig>
        <contig_pos>85519</contig_pos>
        <strand>+</strand>
        <context>CAGGAGAAGY[C/T]ATAATCACAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGAATTATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGT</left_flank>
        <right_flank>ATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGCAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGTCATTTTTTACCTGAAAATGGCGAAAAAATCATGAAAATTGATGGAAAATGAAGGAAAATCGGCGAAAAATGAAAAAAAAAACAAAATTTTCTACAGTAACCCAAACTAATATTTTTATAATGATGTTTTTTGTCGTTTTCAGTGAAATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAAAAGTTTGGAATTTTATTGTATTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATTAAAAAAAACGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGCAGCCCAATTTTCAAATTGCCGCCGCTCCGCCGAAACCAAAAAATCAGAAAAAGCGTCAGCAACGAGTGCCAGATGAGATTCGAAAACTTCAGGCGTCGACACAGCTGATTTTTCCAAAATCCAGATTTCGAAAAATCGTCAAAGAGCTTCTTCAGGACTATTTGACACCGTTGCAAGTGGCCGATGAGGCTGTTGACGCGCTTCAGGTGAGGATTGGCTTGGCGCGAAATTTGAAATTTTCGAAAAAAAAATTTTTGATATTTTTTTCAGTTCGCCGCTGAAGGATACCTTGTGAAGCTGTTCAAACAAACCAACAAATTGACGATCCGTTCTGGTCGAAAAACCATCAAGAAGGAAGACTTGCAGCTGGTTTTGGACTTGCTCGGAGGAGAAAATGACTAGAAAATTCTGGAAATTTTAAATTTTTACGGTTAAAATTATGTATTTTTGCC</canonical>
            <polymorphic>CGGTCATTTTTTACCTGAAAATGGCGAAAAAATCATGAAAATTGATGGAAAATGAAGGAAAATCGGCGAAAAATGAAAAAAAAAACAAAATTTTCTACAGTAACCCAAACTAATATTTTTATAATGATGTTTTTTGTCGTTTTCAGTGAAATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAAAAGTTTGGAATTTTATTGTATTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATTAAAAAAAACGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGTYATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGCAGCCCAATTTTCAAATTGCCGCCGCTCCGCCGAAACCAAAAAATCAGAAAAAGCGTCAGCAACGAGTGCCAGATGAGATTCGAAAACTTCAGGCGTCGACACAGCTGATTTTTCCAAAATCCAGATTTCGAAAAATCGTCAAAGAGCTTCTTCAGGACTATTTGACACCGTTGCAAGTGGCCGATGAGGCTGTTGACGCGCTTCAGGTGAGGATTGGCTTGGCGCGAAATTTGAAATTTTCGAAAAAAAAATTTTTGATATTTTTTTCAGTTCGCCGCTGAAGGATACCTTGTGAAGCTGTTCAAACAAACCAACAAATTGACGATCCGTTCTGGTCGAAAAACCATCAAGAAGGAAGACTTGCAGCTGGTTTTGGACTTGCTCGGAGGAGAAAATGACTAGAAAATTCTGGAAATTTTAAATTTTTACGGTTAAAATTATGTATTTTTGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>499 380 121</canonical_bands>
                <polymorphic_bands>879 121</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAATTTTTCTGTCATTTTTG</pcr_primer_p1>
		<pcr_primer_p2>TGACGCTTTTTCTGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGCAGCCCAATTTTCAAATTGCCGCCGCTCCGCCGAAACCAAAAAATCAGAAAAAGCGTCA</canonical_amplicon>
		<polymorphic_amplicon>TTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGTYATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGCAGCCCAATTTTCAAATTGCCGCCGCTCCGCCGAAACCAAAAAATCAGAAAAAGCGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11453</snp_id>
        <super_contig>c005701729.Contig1</super_contig>
        <contig_pos>85649</contig_pos>
        <strand>+</strand>
        <context>GATGAGATTC[A/G]AAAACTTCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAACCAAAAAATCAGAAAAAGCGTCAGCAACGAGTGCCAGATGAGATTC</left_flank>
        <right_flank>AAAACTTCAGGCGTCGACACAGCTGATTTTTCCAAAATCCAGATTTCGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTGTCGTTTTCAGTGAAATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAAAAGTTTGGAATTTTATTGTATTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATTAAAAAAAACGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGCAGCCCAATTTTCAAATTGCCGCCGCTCCGCCGAAACCAAAAAATCAGAAAAAGCGTCAGCAACGAGTGCCAGATGAGATTCGAAAACTTCAGGCGTCGACACAGCTGATTTTTCCAAAATCCAGATTTCGAAAAATCGTCAAAGAGCTTCTTCAGGACTATTTGACACCGTTGCAAGTGGCCGATGAGGCTGTTGACGCGCTTCAGGTGAGGATTGGCTTGGCGCGAAATTTGAAATTTTCGAAAAAAAAATTTTTGATATTTTTTTCAGTTCGCCGCTGAAGGATACCTTGTGAAGCTGTTCAAACAAACCAACAAATTGACGATCCGTTCTGGTCGAAAAACCATCAAGAAGGAAGACTTGCAGCTGGTTTTGGACTTGCTCGGAGGAGAAAATGACTAGAAAATTCTGGAAATTTTAAATTTTTACGGTTAAAATTATGTATTTTTGCCCCCCTGCACACTCTCTTACATGTACACTACCTCGCTCGTTTTATATACAGAAAGAAGTCTTAATAAATTTCGGAGAATTTGGGTTTTTTTTTCTTTTTGTTCAAAAACTTTCCCCCGAATAATTTATAAC</canonical>
            <polymorphic>TTTTTGTCGTTTTCAGTGAAATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAAAAGTTTGGAATTTTATTGTATTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATTAAAAAAAACGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGCAGCCCAATTTTCAAATTGCCGCCGCTCCGCCGAAACCAAAAAATCAGAAAAAGCGTCAGCAACGAGTGCCAGATGAGATTCRAAAACTTCAGGCGTCGACACAGCTGATTTTTCCAAAATCCAGATTTCGAAAAATCGTCAAAGAGCTTCTTCAGGACTATTTGACACCGTTGCAAGTGGCCGATGAGGCTGTTGACGCGCTTCAGGTGAGGATTGGCTTGGCGCGAAATTTGAAATTTTCGAAAAAAAAATTTTTGATATTTTTTTCAGTTCGCCGCTGAAGGATACCTTGTGAAGCTGTTCAAACAAACCAACAAATTGACGATCCGTTCTGGTCGAAAAACCATCAAGAAGGAAGACTTGCAGCTGGTTTTGGACTTGCTCGGAGGAGAAAATGACTAGAAAATTCTGGAAATTTTAAATTTTTACGGTTAAAATTATGTATTTTTGCCCCCCTGCACACTCTCTTACATGTACACTACCTCGCTCGTTTTATATACAGAAAGAAGTCTTAATAAATTTCGGAGAATTTGGGTTTTTTTTTCTTTTTGTTCAAAAACTTTCCCCCGAATAATTTATAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>498 342 112 48</canonical_bands>
                <polymorphic_bands>546 342 112</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>275 245 138 112 96 86 32 16</canonical_bands>
                <polymorphic_bands>275 245 138 112 102 96 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCATTTTTAATGCTTCAGA</pcr_primer_p1>
		<pcr_primer_p2>GAAGCTCTTTGACGATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGCAGCCCAATTTTCAAATTGCCGCCGCTCCGCCGAAACCAAAAAATCAGAAAAAGCGTCAGCAACGAGTGCCAGATGAGATTCGAAAACTTCAGGCGTCGACACAGCTGATTTTTCCAAAATCCAGATTTCGAAAAATCGTCAAAGAGCTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGCAGCCCAATTTTCAAATTGCCGCCGCTCCGCCGAAACCAAAAAATCAGAAAAAGCGTCAGCAACGAGTGCCAGATGAGATTCRAAAACTTCAGGCGTCGACACAGCTGATTTTTCCAAAATCCAGATTTCGAAAAATCGTCAAAGAGCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11454</snp_id>
        <super_contig>c005701729.Contig1</super_contig>
        <contig_pos>85668</contig_pos>
        <strand>+</strand>
        <context>AGGCGTCGAC[A/T]CAGCTGATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGCGTCAGCAACGAGTGCCAGATGAGATTCGAAAACTTCAGGCGTCGAC</left_flank>
        <right_flank>CAGCTGATTTTTCCAAAATCCAGATTTCGAAAAATCGTCAAAGAGCTTCT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAAAAGTTTGGAATTTTATTGTATTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATTAAAAAAAACGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGCAGCCCAATTTTCAAATTGCCGCCGCTCCGCCGAAACCAAAAAATCAGAAAAAGCGTCAGCAACGAGTGCCAGATGAGATTCGAAAACTTCAGGCGTCGACACAGCTGATTTTTCCAAAATCCAGATTTCGAAAAATCGTCAAAGAGCTTCTTCAGGACTATTTGACACCGTTGCAAGTGGCCGATGAGGCTGTTGACGCGCTTCAGGTGAGGATTGGCTTGGCGCGAAATTTGAAATTTTCGAAAAAAAAATTTTTGATATTTTTTTCAGTTCGCCGCTGAAGGATACCTTGTGAAGCTGTTCAAACAAACCAACAAATTGACGATCCGTTCTGGTCGAAAAACCATCAAGAAGGAAGACTTGCAGCTGGTTTTGGACTTGCTCGGAGGAGAAAATGACTAGAAAATTCTGGAAATTTTAAATTTTTACGGTTAAAATTATGTATTTTTGCCCCCCTGCACACTCTCTTACATGTACACTACCTCGCTCGTTTTATATACAGAAAGAAGTCTTAATAAATTTCGGAGAATTTGGGTTTTTTTTTCTTTTTGTTCAAAAACTTTCCCCCGAATAATTTATAACACACAGCCTCATCGCCCTC</canonical>
            <polymorphic>AATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAAAAGTTTGGAATTTTATTGTATTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATTAAAAAAAACGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGCAGCCCAATTTTCAAATTGCCGCCGCTCCGCCGAAACCAAAAAATCAGAAAAAGCGTCAGCAACGAGTGCCAGATGAGATTCGAAAACTTCAGGCGTCGACWCAGCTGATTTTTCCAAAATCCAGATTTCGAAAAATCGTCAAAGAGCTTCTTCAGGACTATTTGACACCGTTGCAAGTGGCCGATGAGGCTGTTGACGCGCTTCAGGTGAGGATTGGCTTGGCGCGAAATTTGAAATTTTCGAAAAAAAAATTTTTGATATTTTTTTCAGTTCGCCGCTGAAGGATACCTTGTGAAGCTGTTCAAACAAACCAACAAATTGACGATCCGTTCTGGTCGAAAAACCATCAAGAAGGAAGACTTGCAGCTGGTTTTGGACTTGCTCGGAGGAGAAAATGACTAGAAAATTCTGGAAATTTTAAATTTTTACGGTTAAAATTATGTATTTTTGCCCCCCTGCACACTCTCTTACATGTACACTACCTCGCTCGTTTTATATACAGAAAGAAGTCTTAATAAATTTCGGAGAATTTGGGTTTTTTTTTCTTTTTGTTCAAAAACTTTCCCCCGAATAATTTATAACACACAGCCTCATCGCCCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>166 164 144 109 105 85 66 33 30 27 17 16 16 12 6 2 2</canonical_bands>
                <polymorphic_bands>166 164 144 109 105 99 85 30 27 17 16 16 12 6 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATCAGAAAAAGCGTCAG</pcr_primer_p1>
		<pcr_primer_p2>GCTTCACAAGGTATCCTTCA</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>AAAATCAGAAAAAGCGTCAGCAACGAGTGCCAGATGAGATTCGAAAACTTCAGGCGTCGACACAGCTGATTTTTCCAAAATCCAGATTTCGAAAAATCGTCAAAGAGCTTCTTCAGGACTATTTGACACCGTTGCAAGTGGCCGATGAGGCTGTTGACGCGCTTCAGGTGAGGATTGGCTTGGCGCGAAATTTGAAATTTTCGAAAAAAAAATTTTTGATATTTTTTTCAGTTCGCCGCTGAAGGATACCTTGTGAAGC</canonical_amplicon>
		<polymorphic_amplicon>AAAATCAGAAAAAGCGTCAGCAACGAGTGCCAGATGAGATTCGAAAACTTCAGGCGTCGACWCAGCTGATTTTTCCAAAATCCAGATTTCGAAAAATCGTCAAAGAGCTTCTTCAGGACTATTTGACACCGTTGCAAGTGGCCGATGAGGCTGTTGACGCGCTTCAGGTGAGGATTGGCTTGGCGCGAAATTTGAAATTTTCGAAAAAAAAATTTTTGATATTTTTTTCAGTTCGCCGCTGAAGGATACCTTGTGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11455</snp_id>
        <super_contig>c005701729.Contig1</super_contig>
        <contig_pos>89792</contig_pos>
        <strand>+</strand>
        <context>CAGGAGCACC[A/G]GGAAGTAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCACAATGTCCGCCCGGACCACCAGGACCACAAGGAGCTCCAGGAGCACC</left_flank>
        <right_flank>GGAAGTAAGAATTGTGCTATGAGTATTTTATATCATTCAAGAGGTCTTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATTACTGTAGCTAGCGTTAACTTTGTATATTTTATATCACTCGCAAGCCCTTGAAATTTCCTTTAAAACTAAACAAATTTCATAAATTTTGGATACCGTTCAAGCGAGTTATGCGCCTTTAAATTTAGCTGGAGAGGCGCAGAGAAACGAGAGGACTCTAGCTTCTCTGCATCTCTTTTCAAACTCCAAATGCCTGTATCTCGGCTCAAAATCACTCGATTTTCATGATTTTTAGCTTATTTTAAAACTGAAAAACTGGGAAATTAGAAATCGTTAAACTTCTTGCTTTTAAAATAAAGTTTTCAGGTGGAAACCGATTCTCTGTGGATCGACCTGATGGATGTCCAAATCAAGCACTCTGCGCCATCTCGTCCACTGGAAAATCCACTCCTTAGAAGGGATAAACGCTTCGCAAAACTGCCAGACTGGTGTCAGTGTGATTCAGCACCACAATGTCCGCCCGGACCACCAGGACCACAAGGAGCTCCAGGAGCACCAGGAAGTAAGAATTGTGCTATGAGTATTTTATATCATTCAAGAGGTCTTAAAGTTTCCAGCAAGACTATATCGTTTTTTATCAATTTTAGTCTAATTTGAAGCGAGCCATGCGCCTTTGAAGTTTGTCGACGAGACGCAGAGAAACGAGATCTCTCTAGCTTCTCTGCGTCTCCCTCCCCTCCAAGAAAACGCGCGCCACCTTTAAAGGCGCATGACTCAAAAACTACTGTAGCCATCACAAAGATGTAAACTACAAAAATGTGTAAAGCTTTAAGCTGAGCAATTTTTTAATTAATAGCTTTTTGATGGGCAGTGTACTTTTTGAGATACGCGCTTTTGAAATAAGCTGCACCTCTAAAATTATCTATTTTCAGTCCCCGGAGAAGCTGGACCTCGTGGAATGGACAATCCCCACCAAATCTCCACCACTTCCTGCGATCAACAAATTTCGGGATGTGTTCAATGCCCAAGAGGGCCTCCAGGACCTGCTGGACCCGTTG</canonical>
            <polymorphic>GGATTACTGTAGCTAGCGTTAACTTTGTATATTTTATATCACTCGCAAGCCCTTGAAATTTCCTTTAAAACTAAACAAATTTCATAAATTTTGGATACCGTTCAAGCGAGTTATGCGCCTTTAAATTTAGCTGGAGAGGCGCAGAGAAACGAGAGGACTCTAGCTTCTCTGCATCTCTTTTCAAACTCCAAATGCCTGTATCTCGGCTCAAAATCACTCGATTTTCATGATTTTTAGCTTATTTTAAAACTGAAAAACTGGGAAATTAGAAATCGTTAAACTTCTTGCTTTTAAAATAAAGTTTTCAGGTGGAAACCGATTCTCTGTGGATCGACCTGATGGATGTCCAAATCAAGCACTCTGCGCCATCTCGTCCACTGGAAAATCCACTCCTTAGAAGGGATAAACGCTTCGCAAAACTGCCAGACTGGTGTCAGTGTGATTCAGCACCACAATGTCCGCCCGGACCACCAGGACCACAAGGAGCTCCAGGAGCACCRGGAAGTAAGAATTGTGCTATGAGTATTTTATATCATTCAAGAGGTCTTAAAGTTTCCAGCAAGACTATATCGTTTTTTATCAATTTTAGTCTAATTTGAAGCGAGCCATGCGCCTTTGAAGTTTGTCGACGAGACGCAGAGAAACGAGATCTCTCTAGCTTCTCTGCGTCTCCCTCCCCTCCAAGAAAACGCGCGCCACCTTTAAAGGCGCATGACTCAAAAACTACTGTAGCCATCACAAAGATGTAAACTACAAAAATGTGTAAAGCTTTAAGCTGAGCAATTTTTTAATTAATAGCTTTTTGATGGGCAGTGTACTTTTTGAGATACGCGCTTTTGAAATAAGCTGCACCTCTAAAATTATCTATTTTCAGTCCCCGGAGAAGCTGGACCTCGTGGAATGGACAATCCCCACCAAATCTCCACCACTTCCTGCGATCAACAAATTTCGGGATGTGTTCAATGCCCAAGAGGGCCTCCAGGACCTGCTGGACCCGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>481 472 20 18 9</canonical_bands>
                <polymorphic_bands>490 472 20 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTGGTGTCAGTGTGATTCAG</pcr_primer_p1>
		<pcr_primer_p2>CGGGGACTGAAAATAGATAAT</pcr_primer_p2>
		<pcr_amplicon_size>454</pcr_amplicon_size>
		<canonical_amplicon>ACTGGTGTCAGTGTGATTCAGCACCACAATGTCCGCCCGGACCACCAGGACCACAAGGAGCTCCAGGAGCACCAGGAAGTAAGAATTGTGCTATGAGTATTTTATATCATTCAAGAGGTCTTAAAGTTTCCAGCAAGACTATATCGTTTTTTATCAATTTTAGTCTAATTTGAAGCGAGCCATGCGCCTTTGAAGTTTGTCGACGAGACGCAGAGAAACGAGATCTCTCTAGCTTCTCTGCGTCTCCCTCCCCTCCAAGAAAACGCGCGCCACCTTTAAAGGCGCATGACTCAAAAACTACTGTAGCCATCACAAAGATGTAAACTACAAAAATGTGTAAAGCTTTAAGCTGAGCAATTTTTTAATTAATAGCTTTTTGATGGGCAGTGTACTTTTTGAGATACGCGCTTTTGAAATAAGCTGCACCTCTAAAATTATCTATTTTCAGTCCCCG</canonical_amplicon>
		<polymorphic_amplicon>ACTGGTGTCAGTGTGATTCAGCACCACAATGTCCGCCCGGACCACCAGGACCACAAGGAGCTCCAGGAGCACCRGGAAGTAAGAATTGTGCTATGAGTATTTTATATCATTCAAGAGGTCTTAAAGTTTCCAGCAAGACTATATCGTTTTTTATCAATTTTAGTCTAATTTGAAGCGAGCCATGCGCCTTTGAAGTTTGTCGACGAGACGCAGAGAAACGAGATCTCTCTAGCTTCTCTGCGTCTCCCTCCCCTCCAAGAAAACGCGCGCCACCTTTAAAGGCGCATGACTCAAAAACTACTGTAGCCATCACAAAGATGTAAACTACAAAAATGTGTAAAGCTTTAAGCTGAGCAATTTTTTAATTAATAGCTTTTTGATGGGCAGTGTACTTTTTGAGATACGCGCTTTTGAAATAAGCTGCACCTCTAAAATTATCTATTTTCAGTCCCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11456</snp_id>
        <super_contig>c005701729.Contig1</super_contig>
        <contig_pos>89747</contig_pos>
        <strand>+</strand>
        <context>CAGCACCACA[A/G]TGTCCGCCCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACGCTTCGCAAAACTGCCAGACTGGTGTCAGTGTGATTCAGCACCACA</left_flank>
        <right_flank>TGTCCGCCCGGACCACCAGGACCACAAGGAGCTCCAGGAGCACCAGGAAG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTCGAATTTTCAAATTTTTTCAAAAAAAGTTTTTTGAAGTTTTTGGATTACTGTAGCTAGCGTTAACTTTGTATATTTTATATCACTCGCAAGCCCTTGAAATTTCCTTTAAAACTAAACAAATTTCATAAATTTTGGATACCGTTCAAGCGAGTTATGCGCCTTTAAATTTAGCTGGAGAGGCGCAGAGAAACGAGAGGACTCTAGCTTCTCTGCATCTCTTTTCAAACTCCAAATGCCTGTATCTCGGCTCAAAATCACTCGATTTTCATGATTTTTAGCTTATTTTAAAACTGAAAAACTGGGAAATTAGAAATCGTTAAACTTCTTGCTTTTAAAATAAAGTTTTCAGGTGGAAACCGATTCTCTGTGGATCGACCTGATGGATGTCCAAATCAAGCACTCTGCGCCATCTCGTCCACTGGAAAATCCACTCCTTAGAAGGGATAAACGCTTCGCAAAACTGCCAGACTGGTGTCAGTGTGATTCAGCACCACAATGTCCGCCCGGACCACCAGGACCACAAGGAGCTCCAGGAGCACCAGGAAGTAAGAATTGTGCTATGAGTATTTTATATCATTCAAGAGGTCTTAAAGTTTCCAGCAAGACTATATCGTTTTTTATCAATTTTAGTCTAATTTGAAGCGAGCCATGCGCCTTTGAAGTTTGTCGACGAGACGCAGAGAAACGAGATCTCTCTAGCTTCTCTGCGTCTCCCTCCCCTCCAAGAAAACGCGCGCCACCTTTAAAGGCGCATGACTCAAAAACTACTGTAGCCATCACAAAGATGTAAACTACAAAAATGTGTAAAGCTTTAAGCTGAGCAATTTTTTAATTAATAGCTTTTTGATGGGCAGTGTACTTTTTGAGATACGCGCTTTTGAAATAAGCTGCACCTCTAAAATTATCTATTTTCAGTCCCCGGAGAAGCTGGACCTCGTGGAATGGACAATCCCCACCAAATCTCCACCACTTCCTGCGATCAACAAATTTCGGGAT</canonical>
            <polymorphic>GCTCGAATTTTCAAATTTTTTCAAAAAAAGTTTTTTGAAGTTTTTGGATTACTGTAGCTAGCGTTAACTTTGTATATTTTATATCACTCGCAAGCCCTTGAAATTTCCTTTAAAACTAAACAAATTTCATAAATTTTGGATACCGTTCAAGCGAGTTATGCGCCTTTAAATTTAGCTGGAGAGGCGCAGAGAAACGAGAGGACTCTAGCTTCTCTGCATCTCTTTTCAAACTCCAAATGCCTGTATCTCGGCTCAAAATCACTCGATTTTCATGATTTTTAGCTTATTTTAAAACTGAAAAACTGGGAAATTAGAAATCGTTAAACTTCTTGCTTTTAAAATAAAGTTTTCAGGTGGAAACCGATTCTCTGTGGATCGACCTGATGGATGTCCAAATCAAGCACTCTGCGCCATCTCGTCCACTGGAAAATCCACTCCTTAGAAGGGATAAACGCTTCGCAAAACTGCCAGACTGGTGTCAGTGTGATTCAGCACCACARTGTCCGCCCGGACCACCAGGACCACAAGGAGCTCCAGGAGCACCAGGAAGTAAGAATTGTGCTATGAGTATTTTATATCATTCAAGAGGTCTTAAAGTTTCCAGCAAGACTATATCGTTTTTTATCAATTTTAGTCTAATTTGAAGCGAGCCATGCGCCTTTGAAGTTTGTCGACGAGACGCAGAGAAACGAGATCTCTCTAGCTTCTCTGCGTCTCCCTCCCCTCCAAGAAAACGCGCGCCACCTTTAAAGGCGCATGACTCAAAAACTACTGTAGCCATCACAAAGATGTAAACTACAAAAATGTGTAAAGCTTTAAGCTGAGCAATTTTTTAATTAATAGCTTTTTGATGGGCAGTGTACTTTTTGAGATACGCGCTTTTGAAATAAGCTGCACCTCTAAAATTATCTATTTTCAGTCCCCGGAGAAGCTGGACCTCGTGGAATGGACAATCCCCACCAAATCTCCACCACTTCCTGCGATCAACAAATTTCGGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>497 289 214</canonical_bands>
                <polymorphic_bands>786 214</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACTCCTTAGAAGGGATAAAC</pcr_primer_p1>
		<pcr_primer_p2>CGGGGACTGAAAATAGATAAT</pcr_primer_p2>
		<pcr_amplicon_size>494</pcr_amplicon_size>
		<canonical_amplicon>CCACTCCTTAGAAGGGATAAACGCTTCGCAAAACTGCCAGACTGGTGTCAGTGTGATTCAGCACCACAATGTCCGCCCGGACCACCAGGACCACAAGGAGCTCCAGGAGCACCAGGAAGTAAGAATTGTGCTATGAGTATTTTATATCATTCAAGAGGTCTTAAAGTTTCCAGCAAGACTATATCGTTTTTTATCAATTTTAGTCTAATTTGAAGCGAGCCATGCGCCTTTGAAGTTTGTCGACGAGACGCAGAGAAACGAGATCTCTCTAGCTTCTCTGCGTCTCCCTCCCCTCCAAGAAAACGCGCGCCACCTTTAAAGGCGCATGACTCAAAAACTACTGTAGCCATCACAAAGATGTAAACTACAAAAATGTGTAAAGCTTTAAGCTGAGCAATTTTTTAATTAATAGCTTTTTGATGGGCAGTGTACTTTTTGAGATACGCGCTTTTGAAATAAGCTGCACCTCTAAAATTATCTATTTTCAGTCCCCG</canonical_amplicon>
		<polymorphic_amplicon>CCACTCCTTAGAAGGGATAAACGCTTCGCAAAACTGCCAGACTGGTGTCAGTGTGATTCAGCACCACARTGTCCGCCCGGACCACCAGGACCACAAGGAGCTCCAGGAGCACCAGGAAGTAAGAATTGTGCTATGAGTATTTTATATCATTCAAGAGGTCTTAAAGTTTCCAGCAAGACTATATCGTTTTTTATCAATTTTAGTCTAATTTGAAGCGAGCCATGCGCCTTTGAAGTTTGTCGACGAGACGCAGAGAAACGAGATCTCTCTAGCTTCTCTGCGTCTCCCTCCCCTCCAAGAAAACGCGCGCCACCTTTAAAGGCGCATGACTCAAAAACTACTGTAGCCATCACAAAGATGTAAACTACAAAAATGTGTAAAGCTTTAAGCTGAGCAATTTTTTAATTAATAGCTTTTTGATGGGCAGTGTACTTTTTGAGATACGCGCTTTTGAAATAAGCTGCACCTCTAAAATTATCTATTTTCAGTCCCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11457</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>47614</contig_pos>
        <strand>+</strand>
        <context>AAATACCACT[C/T]TGGAACAATC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCACCAGCCGAGTTGGACAACCAAACTCGCATGTTGTTGAAAATACCACT</left_flank>
        <right_flank>TGGAACAATCGGGTTCATTACGTGCGCGGAAGTTCTTTGAGAGATGAAGA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGAATGTGCAGTATTGAGATTTGCAAAGAGCTCGCGCCAAACAAATTGATCTCTTCACCTCTTTCTACTTTGTTATGGTCACTTTCTCCACAGTAGGATACGGAGATTGGTACCCAGACTACTGGGCGTCTCAGCTATGCGTCGTGATTTTGATCTGCGTGGCTTTGGGTTTGATTCCAAAACAACTCGACGAACTTGGACAGACATGGTCGGAGAGACAAAAGTCTGGAACTGATTTCAGCAGTTGGAATGGTGTCGAATCCCATGTGGTGGTTACTATCACCACTTTGGAAGTAGAATTCATTCGAGACTTTTTGGAAGAGTTCTACGCGCACCCAGAAAACCAGGTGAACCTTTTTGTGTTTTTTTTGGATGTTTTTCTTTGGATGTTTTTCTTTCGGTTTTCAAATTAGTTATTTTCTTTCAGAGAATTCAAGTTGTTTTGCTGTCACCAGCCGAGTTGGACAACCAAACTCGCATGTTGTTGAAAATACCACTTTGGAACAATCGGGTTCATTACGTGCGCGGAAGTTCTTTGAGAGATGAAGACTTGGAGAGGTTTGTTTTGTTTTGACTGAAATATACGTATTTTTCAGTTAATTTTTTTCAATATTCAGGAGTCTAAAGCTCGGCTTTCAAGTTTCCTTTTTTTTTGAAAGTTTAGGAGCGTGTAAAAAAGACCTAGATTAAAAATTATGCGCTCACAGAATTTTTTGAAAATTCATAGTTTTCGGATATTCGTCGATTTCTTAAAGACACTTCTTGTTCACTCGTTTTTTGTTCACTAAATGTGGAAAACAGACGTAATTCAGAAATTGGCATATATCGGAAAAATTAGGTATTTTCAAAAAATGCTGTAAATGCGCAGTTCTTAATCTAGGTCTGTTTTACACCTATCGCAAAATGATCGGAAACTTGATAGCCGAGCTCCAGAGTTTTGAAATTGCTCGAAATGGCCGAAGTTCATTTGAAAAATACGTTGTTTCATTTTTATTGTAA</canonical>
            <polymorphic>GGGAATGTGCAGTATTGAGATTTGCAAAGAGCTCGCGCCAAACAAATTGATCTCTTCACCTCTTTCTACTTTGTTATGGTCACTTTCTCCACAGTAGGATACGGAGATTGGTACCCAGACTACTGGGCGTCTCAGCTATGCGTCGTGATTTTGATCTGCGTGGCTTTGGGTTTGATTCCAAAACAACTCGACGAACTTGGACAGACATGGTCGGAGAGACAAAAGTCTGGAACTGATTTCAGCAGTTGGAATGGTGTCGAATCCCATGTGGTGGTTACTATCACCACTTTGGAAGTAGAATTCATTCGAGACTTTTTGGAAGAGTTCTACGCGCACCCAGAAAACCAGGTGAACCTTTTTGTGTTTTTTTTGGATGTTTTTCTTTGGATGTTTTTCTTTCGGTTTTCAAATTAGTTATTTTCTTTCAGAGAATTCAAGTTGTTTTGCTGTCACCAGCCGAGTTGGACAACCAAACTCGCATGTTGTTGAAAATACCACTYTGGAACAATCGGGTTCATTACGTGCGCGGAAGTTCTTTGAGAGATGAAGACTTGGAGAGGTTTGTTTTGTTTTGACTGAAATATACGTATTTTTCAGTTAATTTTTTTCAATATTCAGGAGTCTAAAGCTCGGCTTTCAAGTTTCCTTTTTTTTTGAAAGTTTAGGAGCGTGTAAAAAAGACCTAGATTAAAAATTATGCGCTCACAGAATTTTTTGAAAATTCATAGTTTTCGGATATTCGTCGATTTCTTAAAGACACTTCTTGTTCACTCGTTTTTTGTTCACTAAATGTGGAAAACAGACGTAATTCAGAAATTGGCATATATCGGAAAAATTAGGTATTTTCAAAAAATGCTGTAAATGCGCAGTTCTTAATCTAGGTCTGTTTTACACCTATCGCAAAATGATCGGAAACTTGATAGCCGAGCTCCAGAGTTTTGAAATTGCTCGAAATGGCCGAAGTTCATTTGAAAAATACGTTGTTTCATTTTTATTGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGACTTTTTGGAAGAGTTCTACG</pcr_primer_p1>
		<pcr_primer_p2>CTCCAAGTCTTCATCTCTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGACTTTTTGGAAGAGTTCTACGCGCACCCAGAAAACCAGGTGAACCTTTTTGTGTTTTTTTTGGATGTTTTTCTTTGGATGTTTTTCTTTCGGTTTTCAAATTAGTTATTTTCTTTCAGAGAATTCAAGTTGTTTTGCTGTCACCAGCCGAGTTGGACAACCAAACTCGCATGTTGTTGAAAATACCACTTTGGAACAATCGGGTTCATTACGTGCGCGGAAGTTCTTTGAGAGATGAAGACTTGGAG</canonical_amplicon>
		<polymorphic_amplicon>AGACTTTTTGGAAGAGTTCTACGCGCACCCAGAAAACCAGGTGAACCTTTTTGTGTTTTTTTTGGATGTTTTTCTTTGGATGTTTTTCTTTCGGTTTTCAAATTAGTTATTTTCTTTCAGAGAATTCAAGTTGTTTTGCTGTCACCAGCCGAGTTGGACAACCAAACTCGCATGTTGTTGAAAATACCACTYTGGAACAATCGGGTTCATTACGTGCGCGGAAGTTCTTTGAGAGATGAAGACTTGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11458</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>55353</contig_pos>
        <strand></strand>
        <context>ataattgagc[G/T]GATAGTAGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTAGTTTAAATGTTTTCGATATCTTTGACAGGAATTGAGATAATTGAGC</left_flank>
        <right_flank>GATAGTAGAGGTTTCGGTTGGCCTAATAGAGGAAATACGGTATGGACATT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCGAGAAATTTGAGTAGAGGGTGGACTGGGAAGAAAAAATCAAGTTGGGAAAAATGGAATACTCGTACAATGGTTCAAGCGATTTGAAAATTTTTTAGAGAAACAATGTGTGGGTGTGTTTTGTCGACATTATATATATAATACATGTGTGTTTTAGAATTAAGTAGTCTTGTGAGAGAGATAATAATACACTTTAGGAGGGGTTTCACCGATAGTTACGTTGTTGGTAATCGTCTGTGTAGGTGTAGTTGGCATACCCCCTGAAAAAAAAACGTTTAAAATTAAAAAAAAAACCCCCCCCCCCCATTTTATAAATGGTGTTGCCGTTTTTTCTCTAATATAAGCGCACCCAAACCATCAATTTTGAGCTCAATTATCTCGATTTTTGTGATTGATATCGAAAATTGGCTAACTGATGAAAACGTCATCATAATATCACAACTATTTTATTAGTTTAAATGTTTTCGATATCTTTGACAGGAATTGAGATAATTGAGCGGATAGTAGAGGTTTCGGTTGGCCTAATAGAGGAAATACGGTATGGACATTAAAAAAACTTACGGCTTGGGCCTTGTATCATATGTATCCGTTATAAATGAAGACATGTGATGTGTTTCTGATGGTGGCTCCACGATACTGTAACTTGATACTCTTAAATTCTTCAAAAAAAACCCCTTCAAATTACTATTTCGGGAAGGCATGCATTTTTGAGTAGAGGCCAATGAGCGAATTTGATATCATAACGATTGGGACCAAAAGCACGAGACATATCAGCATACACATCCAAGTGCCATTCTGGAAATTCAAATTTATTTCAGGTCCCCTTGATTCCCCATTTTTTTTAAATCCAAAAAAAAGACGTTTCTTACATATGGGTCGATGGTATAATTGCAAATCGCTGCTGTTGTTTGTTTGGCAATTTGTGTCAACGGTTGGCACGACGTGACCTCTGTTTCCATCTGAAAGAGACGCAACCAATTAGTACCGTTTGAAAAAAAA</canonical>
            <polymorphic>AGCGAGAAATTTGAGTAGAGGGTGGACTGGGAAGAAAAAATCAAGTTGGGAAAAATGGAATACTCGTACAATGGTTCAAGCGATTTGAAAATTTTTTAGAGAAACAATGTGTGGGTGTGTTTTGTCGACATTATATATATAATACATGTGTGTTTTAGAATTAAGTAGTCTTGTGAGAGAGATAATAATACACTTTAGGAGGGGTTTCACCGATAGTTACGTTGTTGGTAATCGTCTGTGTAGGTGTAGTTGGCATACCCCCTGAAAAAAAAACGTTTAAAATTAAAAAAAAAACCCCCCCCCCCCATTTTATAAATGGTGTTGCCGTTTTTTCTCTAATATAAGCGCACCCAAACCATCAATTTTGAGCTCAATTATCTCGATTTTTGTGATTGATATCGAAAATTGGCTAACTGATGAAAACGTCATCATAATATCACAACTATTTTATTAGTTTAAATGTTTTCGATATCTTTGACAGGAATTGAGATAATTGAGCKGATAGTAGAGGTTTCGGTTGGCCTAATAGAGGAAATACGGTATGGACATTAAAAAAACTTACGGCTTGGGCCTTGTATCATATGTATCCGTTATAAATGAAGACATGTGATGTGTTTCTGATGGTGGCTCCACGATACTGTAACTTGATACTCTTAAATTCTTCAAAAAAAACCCCTTCAAATTACTATTTCGGGAAGGCATGCATTTTTGAGTAGAGGCCAATGAGCGAATTTGATATCATAACGATTGGGACCAAAAGCACGAGACATATCAGCATACACATCCAAGTGCCATTCTGGAAATTCAAATTTATTTCAGGTCCCCTTGATTCCCCATTTTTTTTAAATCCAAAAAAAAGACGTTTCTTACATATGGGTCGATGGTATAATTGCAAATCGCTGCTGTTGTTTGTTTGGCAATTTGTGTCAACGGTTGGCACGACGTGACCTCTGTTTCCATCTGAAAGAGACGCAACCAATTAGTACCGTTTGAAAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGTAGGTGTAGTTGGCATAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTAATGTCCATACCGTATTTC</pcr_primer_p2>
		<pcr_amplicon_size>318</pcr_amplicon_size>
		<canonical_amplicon>TGTGTAGGTGTAGTTGGCATACCCCCTGAAAAAAAAACGTTTAAAATTAAAAAAAAAACCCCCCCCCCCCATTTTATAAATGGTGTTGCCGTTTTTTCTCTAATATAAGCGCACCCAAACCATCAATTTTGAGCTCAATTATCTCGATTTTTGTGATTGATATCGAAAATTGGCTAACTGATGAAAACGTCATCATAATATCACAACTATTTTATTAGTTTAAATGTTTTCGATATCTTTGACAGGAATTGAGATAATTGAGCGGATAGTAGAGGTTTCGGTTGGCCTAATAGAGGAAATACGGTATGGACATTAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGTGTAGGTGTAGTTGGCATACCCCCTGAAAAAAAAACGTTTAAAATTAAAAAAAAAACCCCCCCCCCCCATTTTATAAATGGTGTTGCCGTTTTTTCTCTAATATAAGCGCACCCAAACCATCAATTTTGAGCTCAATTATCTCGATTTTTGTGATTGATATCGAAAATTGGCTAACTGATGAAAACGTCATCATAATATCACAACTATTTTATTAGTTTAAATGTTTTCGATATCTTTGACAGGAATTGAGATAATTGAGCKGATAGTAGAGGTTTCGGTTGGCCTAATAGAGGAAATACGGTATGGACATTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11459</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>57638</contig_pos>
        <strand>+</strand>
        <context>AGCTGAAAAT[C/T]CTTTTTTATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAACAAGTCATCACCAATTTGTTTTAGCATGTTTTGAGCAGCTGAAAAT</left_flank>
        <right_flank>CTTTTTTATTCAATTTTCGAACCATTTTCAATCCCTACAATGCGTTTCTC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCAAACTAGATTGGAGAAGTTTCCAATGGAGAACATTAGGCCAGCCGTCCCAACTGCCAAAATAACGAAAATAAGGAGGAATGCCCATATTCCACTGGAAAACAAAGTTTTGGAGATCAAATATATTTTCAACTGACAATGAATAGAATTTTCCACCAGTACTCCTTACACAACAATCATCGTTATAGTATGTTGGTCGCCGTCCGCAAATTCCATAAAGGACACCGAATAGGAAAATAAGAGCCAGCAAAATGAACAAACTAGTGACAACCAGAGATACATACCAACTGAAATAGGCTTCTAAGGAGTAATCTCTAATTTTCTATTACCTATACTGAATGATTTTCAACGTTGGCGTCTTCTTTGGATCTGACACATAGGATACTGAACTGTAAAGTGCTTCGAATGTCACTTTGCGCAGTTGAGTGGATATCGTTTCTGCCACTAGGAACAAGTCATCACCAATTTGTTTTAGCATGTTTTGAGCAGCTGAAAATCCTTTTTTATTCAATTTTCGAACCATTTTCAATCCCTACAATGCGTTTCTCTATCAATCTCATGTTGAATCCTATTCTCCAACTGCCCAAACTGAGCATTCGACGCCGCGAGCACCTGGGTAATGTTGGCGTTGACGATTTCCGACAGACCATTCTCGGTGGCATCCGGAAGGAATTTCTGAATACCCATGAATATGATGCATACTTATCATTCCCCTTTTTGGTCCCCTTTTGCTACTCACTTGGTCAATTTTGAATTGAGTGACAGCTACACTTTCTAGAAGTCGTTCCGCTTTTGCACACATACTTCTGACGGGCTCGAGCTCATTCTCTAGACACTTGACGAGCTCTTCATTAGCTGTATTTCGTAGTCGTGAGAATTCCGCCTAAAAGGTATGAATTGGAGGCAATTAAAAGTGGAATATAACCTCAAATCGCGCTCCTTCCTCATTTAGAAATCTGACCTTCCCATGAACTGACTCTAACCCGTCATGCATTTCC</canonical>
            <polymorphic>TGGCAAACTAGATTGGAGAAGTTTCCAATGGAGAACATTAGGCCAGCCGTCCCAACTGCCAAAATAACGAAAATAAGGAGGAATGCCCATATTCCACTGGAAAACAAAGTTTTGGAGATCAAATATATTTTCAACTGACAATGAATAGAATTTTCCACCAGTACTCCTTACACAACAATCATCGTTATAGTATGTTGGTCGCCGTCCGCAAATTCCATAAAGGACACCGAATAGGAAAATAAGAGCCAGCAAAATGAACAAACTAGTGACAACCAGAGATACATACCAACTGAAATAGGCTTCTAAGGAGTAATCTCTAATTTTCTATTACCTATACTGAATGATTTTCAACGTTGGCGTCTTCTTTGGATCTGACACATAGGATACTGAACTGTAAAGTGCTTCGAATGTCACTTTGCGCAGTTGAGTGGATATCGTTTCTGCCACTAGGAACAAGTCATCACCAATTTGTTTTAGCATGTTTTGAGCAGCTGAAAATYCTTTTTTATTCAATTTTCGAACCATTTTCAATCCCTACAATGCGTTTCTCTATCAATCTCATGTTGAATCCTATTCTCCAACTGCCCAAACTGAGCATTCGACGCCGCGAGCACCTGGGTAATGTTGGCGTTGACGATTTCCGACAGACCATTCTCGGTGGCATCCGGAAGGAATTTCTGAATACCCATGAATATGATGCATACTTATCATTCCCCTTTTTGGTCCCCTTTTGCTACTCACTTGGTCAATTTTGAATTGAGTGACAGCTACACTTTCTAGAAGTCGTTCCGCTTTTGCACACATACTTCTGACGGGCTCGAGCTCATTCTCTAGACACTTGACGAGCTCTTCATTAGCTGTATTTCGTAGTCGTGAGAATTCCGCCTAAAAGGTATGAATTGGAGGCAATTAAAAGTGGAATATAACCTCAAATCGCGCTCCTTCCTCATTTAGAAATCTGACCTTCCCATGAACTGACTCTAACCCGTCATGCATTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTACCTATACTGAATGATTTTCAAC</pcr_primer_p1>
		<pcr_primer_p2>AGGATTCAACATGAGATTGATAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTACCTATACTGAATGATTTTCAACGTTGGCGTCTTCTTTGGATCTGACACATAGGATACTGAACTGTAAAGTGCTTCGAATGTCACTTTGCGCAGTTGAGTGGATATCGTTTCTGCCACTAGGAACAAGTCATCACCAATTTGTTTTAGCATGTTTTGAGCAGCTGAAAATCCTTTTTTATTCAATTTTCGAACCATTTTCAATCCCTACAATGCGTTTCTCTATCAATCTCATGTTGAATCCT</canonical_amplicon>
		<polymorphic_amplicon>ATTACCTATACTGAATGATTTTCAACGTTGGCGTCTTCTTTGGATCTGACACATAGGATACTGAACTGTAAAGTGCTTCGAATGTCACTTTGCGCAGTTGAGTGGATATCGTTTCTGCCACTAGGAACAAGTCATCACCAATTTGTTTTAGCATGTTTTGAGCAGCTGAAAATYCTTTTTTATTCAATTTTCGAACCATTTTCAATCCCTACAATGCGTTTCTCTATCAATCTCATGTTGAATCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11460</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>57275</contig_pos>
        <strand>+</strand>
        <context>ATTTTCAACT[C/G]ACAATGAATA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCATATTCCACTGGAAAACAAAGTTTTGGAGATCAAATATATTTTCAACT</left_flank>
        <right_flank>ACAATGAATAGAATTTTCCACCAGTACTCCTTACACAACAATCATCGTTA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTAGAGATAAAAGCGTCTAGCGGGCGAATCTCCGGCATATTCTCCATTGTGGTCTTTAAGAAAATTTGTAACTGATTGTATGCATCCTTCTCAAAGTCTTGCAACTTATTCAAGTGATATTTCTTGTCAAAGTCATAGAAATTATAAATCGTCTCATTTCTCGAACACGCCCTGATAACTTCAGCCGGCGATTTTGACTGCAGAGTGACTTCAATATCATTCTCTGGAGTGTGATTTGCTTTCCAAAGGTTGATATATCTCTCGGCGAGCTAAAAAGCAAGAGTTCAGATTTTCGGACAAAGGGCAAAGATTAAGACGAACCGATAAAGAGTCCGGGTGACCCAAGGGGTTTCTCATCGGCTGGCAAACTAGATTGGAGAAGTTTCCAATGGAGAACATTAGGCCAGCCGTCCCAACTGCCAAAATAACGAAAATAAGGAGGAATGCCCATATTCCACTGGAAAACAAAGTTTTGGAGATCAAATATATTTTCAACTGACAATGAATAGAATTTTCCACCAGTACTCCTTACACAACAATCATCGTTATAGTATGTTGGTCGCCGTCCGCAAATTCCATAAAGGACACCGAATAGGAAAATAAGAGCCAGCAAAATGAACAAACTAGTGACAACCAGAGATACATACCAACTGAAATAGGCTTCTAAGGAGTAATCTCTAATTTTCTATTACCTATACTGAATGATTTTCAACGTTGGCGTCTTCTTTGGATCTGACACATAGGATACTGAACTGTAAAGTGCTTCGAATGTCACTTTGCGCAGTTGAGTGGATATCGTTTCTGCCACTAGGAACAAGTCATCACCAATTTGTTTTAGCATGTTTTGAGCAGCTGAAAATCCTTTTTTATTCAATTTTCGAACCATTTTCAATCCCTACAATGCGTTTCTCTATCAATCTCATGTTGAATCCTATTCTCCAACTGCCCAAACTGAGCATTCGACGCCGCGAGCACCTGGGTAATGTTGGCGTTGACGA</canonical>
            <polymorphic>TTCTAGAGATAAAAGCGTCTAGCGGGCGAATCTCCGGCATATTCTCCATTGTGGTCTTTAAGAAAATTTGTAACTGATTGTATGCATCCTTCTCAAAGTCTTGCAACTTATTCAAGTGATATTTCTTGTCAAAGTCATAGAAATTATAAATCGTCTCATTTCTCGAACACGCCCTGATAACTTCAGCCGGCGATTTTGACTGCAGAGTGACTTCAATATCATTCTCTGGAGTGTGATTTGCTTTCCAAAGGTTGATATATCTCTCGGCGAGCTAAAAAGCAAGAGTTCAGATTTTCGGACAAAGGGCAAAGATTAAGACGAACCGATAAAGAGTCCGGGTGACCCAAGGGGTTTCTCATCGGCTGGCAAACTAGATTGGAGAAGTTTCCAATGGAGAACATTAGGCCAGCCGTCCCAACTGCCAAAATAACGAAAATAAGGAGGAATGCCCATATTCCACTGGAAAACAAAGTTTTGGAGATCAAATATATTTTCAACTSACAATGAATAGAATTTTCCACCAGTACTCCTTACACAACAATCATCGTTATAGTATGTTGGTCGCCGTCCGCAAATTCCATAAAGGACACCGAATAGGAAAATAAGAGCCAGCAAAATGAACAAACTAGTGACAACCAGAGATACATACCAACTGAAATAGGCTTCTAAGGAGTAATCTCTAATTTTCTATTACCTATACTGAATGATTTTCAACGTTGGCGTCTTCTTTGGATCTGACACATAGGATACTGAACTGTAAAGTGCTTCGAATGTCACTTTGCGCAGTTGAGTGGATATCGTTTCTGCCACTAGGAACAAGTCATCACCAATTTGTTTTAGCATGTTTTGAGCAGCTGAAAATCCTTTTTTATTCAATTTTCGAACCATTTTCAATCCCTACAATGCGTTTCTCTATCAATCTCATGTTGAATCCTATTCTCCAACTGCCCAAACTGAGCATTCGACGCCGCGAGCACCTGGGTAATGTTGGCGTTGACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAACGAAAATAAGGAGGAATG</pcr_primer_p1>
		<pcr_primer_p2>CTCCTTAGAAGCCTATTTCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATAACGAAAATAAGGAGGAATGCCCATATTCCACTGGAAAACAAAGTTTTGGAGATCAAATATATTTTCAACTGACAATGAATAGAATTTTCCACCAGTACTCCTTACACAACAATCATCGTTATAGTATGTTGGTCGCCGTCCGCAAATTCCATAAAGGACACCGAATAGGAAAATAAGAGCCAGCAAAATGAACAAACTAGTGACAACCAGAGATACATACCAACTGAAATAGGCTTCTAAGGAG</canonical_amplicon>
		<polymorphic_amplicon>AATAACGAAAATAAGGAGGAATGCCCATATTCCACTGGAAAACAAAGTTTTGGAGATCAAATATATTTTCAACTSACAATGAATAGAATTTTCCACCAGTACTCCTTACACAACAATCATCGTTATAGTATGTTGGTCGCCGTCCGCAAATTCCATAAAGGACACCGAATAGGAAAATAAGAGCCAGCAAAATGAACAAACTAGTGACAACCAGAGATACATACCAACTGAAATAGGCTTCTAAGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11461</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>57186</contig_pos>
        <strand>+</strand>
        <context>TTAGGCCAGC[A/C]GTCCCAACTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGCTGGCAAACTAGATTGGAGAAGTTTCCAATGGAGAACATTAGGCCAGC</left_flank>
        <right_flank>GTCCCAACTGCCAAAATAACGAAAATAAGGAGGAATGCCCATATTCCACT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAATTTTTGAGACCAACCGCGTTGAGCCCTTGTTGGCTAACTTTTGACACATTCACTGCTGCAAGCTTCTCGAGGTCCTTAAGTTCACTTCTAGAGATAAAAGCGTCTAGCGGGCGAATCTCCGGCATATTCTCCATTGTGGTCTTTAAGAAAATTTGTAACTGATTGTATGCATCCTTCTCAAAGTCTTGCAACTTATTCAAGTGATATTTCTTGTCAAAGTCATAGAAATTATAAATCGTCTCATTTCTCGAACACGCCCTGATAACTTCAGCCGGCGATTTTGACTGCAGAGTGACTTCAATATCATTCTCTGGAGTGTGATTTGCTTTCCAAAGGTTGATATATCTCTCGGCGAGCTAAAAAGCAAGAGTTCAGATTTTCGGACAAAGGGCAAAGATTAAGACGAACCGATAAAGAGTCCGGGTGACCCAAGGGGTTTCTCATCGGCTGGCAAACTAGATTGGAGAAGTTTCCAATGGAGAACATTAGGCCAGCCGTCCCAACTGCCAAAATAACGAAAATAAGGAGGAATGCCCATATTCCACTGGAAAACAAAGTTTTGGAGATCAAATATATTTTCAACTGACAATGAATAGAATTTTCCACCAGTACTCCTTACACAACAATCATCGTTATAGTATGTTGGTCGCCGTCCGCAAATTCCATAAAGGACACCGAATAGGAAAATAAGAGCCAGCAAAATGAACAAACTAGTGACAACCAGAGATACATACCAACTGAAATAGGCTTCTAAGGAGTAATCTCTAATTTTCTATTACCTATACTGAATGATTTTCAACGTTGGCGTCTTCTTTGGATCTGACACATAGGATACTGAACTGTAAAGTGCTTCGAATGTCACTTTGCGCAGTTGAGTGGATATCGTTTCTGCCACTAGGAACAAGTCATCACCAATTTGTTTTAGCATGTTTTGAGCAGCTGAAAATCCTTTTTTATTCAATTTTCGAACCATTTTCAATCCCTACAATGCGTTTC</canonical>
            <polymorphic>TGAATTTTTGAGACCAACCGCGTTGAGCCCTTGTTGGCTAACTTTTGACACATTCACTGCTGCAAGCTTCTCGAGGTCCTTAAGTTCACTTCTAGAGATAAAAGCGTCTAGCGGGCGAATCTCCGGCATATTCTCCATTGTGGTCTTTAAGAAAATTTGTAACTGATTGTATGCATCCTTCTCAAAGTCTTGCAACTTATTCAAGTGATATTTCTTGTCAAAGTCATAGAAATTATAAATCGTCTCATTTCTCGAACACGCCCTGATAACTTCAGCCGGCGATTTTGACTGCAGAGTGACTTCAATATCATTCTCTGGAGTGTGATTTGCTTTCCAAAGGTTGATATATCTCTCGGCGAGCTAAAAAGCAAGAGTTCAGATTTTCGGACAAAGGGCAAAGATTAAGACGAACCGATAAAGAGTCCGGGTGACCCAAGGGGTTTCTCATCGGCTGGCAAACTAGATTGGAGAAGTTTCCAATGGAGAACATTAGGCCAGCMGTCCCAACTGCCAAAATAACGAAAATAAGGAGGAATGCCCATATTCCACTGGAAAACAAAGTTTTGGAGATCAAATATATTTTCAACTGACAATGAATAGAATTTTCCACCAGTACTCCTTACACAACAATCATCGTTATAGTATGTTGGTCGCCGTCCGCAAATTCCATAAAGGACACCGAATAGGAAAATAAGAGCCAGCAAAATGAACAAACTAGTGACAACCAGAGATACATACCAACTGAAATAGGCTTCTAAGGAGTAATCTCTAATTTTCTATTACCTATACTGAATGATTTTCAACGTTGGCGTCTTCTTTGGATCTGACACATAGGATACTGAACTGTAAAGTGCTTCGAATGTCACTTTGCGCAGTTGAGTGGATATCGTTTCTGCCACTAGGAACAAGTCATCACCAATTTGTTTTAGCATGTTTTGAGCAGCTGAAAATCCTTTTTTATTCAATTTTCGAACCATTTTCAATCCCTACAATGCGTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>209 199 192 91 85 57 54 43 29 27 10 4</canonical_bands>
                <polymorphic_bands>209 203 192 91 85 57 54 43 29 27 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGATTAAGACGAACCGATAAAG</pcr_primer_p1>
		<pcr_primer_p2>ATAACGATGATTGTTGTGTAAGG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAGATTAAGACGAACCGATAAAGAGTCCGGGTGACCCAAGGGGTTTCTCATCGGCTGGCAAACTAGATTGGAGAAGTTTCCAATGGAGAACATTAGGCCAGCCGTCCCAACTGCCAAAATAACGAAAATAAGGAGGAATGCCCATATTCCACTGGAAAACAAAGTTTTGGAGATCAAATATATTTTCAACTGACAATGAATAGAATTTTCCACCAGTACTCCTTACACAACAATCATCGTTAT</canonical_amplicon>
		<polymorphic_amplicon>AAGATTAAGACGAACCGATAAAGAGTCCGGGTGACCCAAGGGGTTTCTCATCGGCTGGCAAACTAGATTGGAGAAGTTTCCAATGGAGAACATTAGGCCAGCMGTCCCAACTGCCAAAATAACGAAAATAAGGAGGAATGCCCATATTCCACTGGAAAACAAAGTTTTGGAGATCAAATATATTTTCAACTGACAATGAATAGAATTTTCCACCAGTACTCCTTACACAACAATCATCGTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11462</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>116192</contig_pos>
        <strand>+</strand>
        <context>GTTTATACTG[G/T]GGAAATCTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTTTTTAAACCCCATGGAAGTGAATTTTTGAAAATTCAGGTTTATACTG</left_flank>
        <right_flank>GGAAATCTAGCAGCAGGGTTTTAAAAACCAGCCAGTCCAGGTGAAAATCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTGTCAGTTTGAAGGCATTAACTCACAAAAGATTATACTTCTCTCTCCCTTCTCTCCGCTTCGTTGTGTTTAAAGAGCGGCTAAGCACTTCTTTACTGTTTTCATGCCATCGCTTCGCTATAAGATGAAAATTGATGTTTCGGGATTAGAAAAACGACCATTACTATCGCATTTTGAAAACAAAACCCGCTATTGAAACCAGAAAGCTTCGTCTCGGGTTACTCGGGGTGGCTAGGACTTCAATTGTGTGTCACGCGATAGATGTACTTTGGGTTGTTGAAGAGAAAGAGAAACAAAAGTTCGGAGATTGGCGGGAAAAAGATCTTTGATAAAACTTCGTTGAAAAAATTAGTTAACAAATTGAAGGAGGTTTCCAAATTTCGAAAAATGAACTTTCGAAACTTTTTTTTGAAAATTTAAGTTTTGAGATTTGAAAAAGCGATAAAAACTTTTTTAAACCCCATGGAAGTGAATTTTTGAAAATTCAGGTTTATACTGTGGAAATCTAGCAGCAGGGTTTTAAAAACCAGCCAGTCCAGGTGAAAATCTTGAAATTCAACAAAACATTTGAAAAAAAAAATATAATCTAACTTGAAAATGCATGAAAACTCTTCCTAAAAATTATTTCAACTAATATTTTTCTAGCAATTTAAACTTCGAGATTCAATTCATTATACTTTAAAATTTTCTTTTTTTCAATATCAAATTTTCCAGTTTCTTCTGCGGAATTCTGACATTTCCAGGTTTTCCAAAAAATCTAAAAAATTGAAAAAATCGAAACCAACTTTTAAAATGATTACAAAAACTCATAAAATAGCTCATGAAGCTCAAAAATATTTTGAAGCCGTAGGGACGGTAAACAGAATAAAGACCGTGGCCTAGGAACCTCTTTTTTTCAATAATTACATTTTTCGAGTTATGATGAAAAGCATATTCTTGCAATTAATGGATAAGCAATTTCTAATGTTTTAATTCTTTTTGAGAAAAACTGATTTTCAG</canonical>
            <polymorphic>GGTGTCAGTTTGAAGGCATTAACTCACAAAAGATTATACTTCTCTCTCCCTTCTCTCCGCTTCGTTGTGTTTAAAGAGCGGCTAAGCACTTCTTTACTGTTTTCATGCCATCGCTTCGCTATAAGATGAAAATTGATGTTTCGGGATTAGAAAAACGACCATTACTATCGCATTTTGAAAACAAAACCCGCTATTGAAACCAGAAAGCTTCGTCTCGGGTTACTCGGGGTGGCTAGGACTTCAATTGTGTGTCACGCGATAGATGTACTTTGGGTTGTTGAAGAGAAAGAGAAACAAAAGTTCGGAGATTGGCGGGAAAAAGATCTTTGATAAAACTTCGTTGAAAAAATTAGTTAACAAATTGAAGGAGGTTTCCAAATTTCGAAAAATGAACTTTCGAAACTTTTTTTTGAAAATTTAAGTTTTGAGATTTGAAAAAGCGATAAAAACTTTTTTAAACCCCATGGAAGTGAATTTTTGAAAATTCAGGTTTATACTGKGGAAATCTAGCAGCAGGGTTTTAAAAACCAGCCAGTCCAGGTGAAAATCTTGAAATTCAACAAAACATTTGAAAAAAAAAATATAATCTAACTTGAAAATGCATGAAAACTCTTCCTAAAAATTATTTCAACTAATATTTTTCTAGCAATTTAAACTTCGAGATTCAATTCATTATACTTTAAAATTTTCTTTTTTTCAATATCAAATTTTCCAGTTTCTTCTGCGGAATTCTGACATTTCCAGGTTTTCCAAAAAATCTAAAAAATTGAAAAAATCGAAACCAACTTTTAAAATGATTACAAAAACTCATAAAATAGCTCATGAAGCTCAAAAATATTTTGAAGCCGTAGGGACGGTAAACAGAATAAAGACCGTGGCCTAGGAACCTCTTTTTTTCAATAATTACATTTTTCGAGTTATGATGAAAAGCATATTCTTGCAATTAATGGATAAGCAATTTCTAATGTTTTAATTCTTTTTGAGAAAAACTGATTTTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>400 358 126 98 18</canonical_bands>
                <polymorphic_bands>758 126 98 18</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>334 218 143 123 43 42 29 22 19 18 4 3 2</canonical_bands>
                <polymorphic_bands>334 218 143 123 71 43 22 19 18 4 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAACAAATTGAAGGAGGTTTC</pcr_primer_p1>
		<pcr_primer_p2>TCATGCATTTTCAAGTTAGATTA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTAACAAATTGAAGGAGGTTTCCAAATTTCGAAAAATGAACTTTCGAAACTTTTTTTTGAAAATTTAAGTTTTGAGATTTGAAAAAGCGATAAAAACTTTTTTAAACCCCATGGAAGTGAATTTTTGAAAATTCAGGTTTATACTGTGGAAATCTAGCAGCAGGGTTTTAAAAACCAGCCAGTCCAGGTGAAAATCTTGAAATTCAACAAAACATTTGAAAAAAAAAATATAATCTAACTTGAAAATGCATGA</canonical_amplicon>
		<polymorphic_amplicon>TTAACAAATTGAAGGAGGTTTCCAAATTTCGAAAAATGAACTTTCGAAACTTTTTTTTGAAAATTTAAGTTTTGAGATTTGAAAAAGCGATAAAAACTTTTTTAAACCCCATGGAAGTGAATTTTTGAAAATTCAGGTTTATACTGKGGAAATCTAGCAGCAGGGTTTTAAAAACCAGCCAGTCCAGGTGAAAATCTTGAAATTCAACAAAACATTTGAAAAAAAAAATATAATCTAACTTGAAAATGCATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11463</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>116651</contig_pos>
        <strand>+</strand>
        <context>GGATAAGCAA[C/T]TTCTAATGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTCGAGTTATGATGAAAAGCATATTCTTGCAATTAATGGATAAGCAA</left_flank>
        <right_flank>TTCTAATGTTTTAATTCTTTTTGAGAAAAACTGATTTTCAGTTTTTTCTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCCATGGAAGTGAATTTTTGAAAATTCAGGTTTATACTGTGGAAATCTAGCAGCAGGGTTTTAAAAACCAGCCAGTCCAGGTGAAAATCTTGAAATTCAACAAAACATTTGAAAAAAAAAATATAATCTAACTTGAAAATGCATGAAAACTCTTCCTAAAAATTATTTCAACTAATATTTTTCTAGCAATTTAAACTTCGAGATTCAATTCATTATACTTTAAAATTTTCTTTTTTTCAATATCAAATTTTCCAGTTTCTTCTGCGGAATTCTGACATTTCCAGGTTTTCCAAAAAATCTAAAAAATTGAAAAAATCGAAACCAACTTTTAAAATGATTACAAAAACTCATAAAATAGCTCATGAAGCTCAAAAATATTTTGAAGCCGTAGGGACGGTAAACAGAATAAAGACCGTGGCCTAGGAACCTCTTTTTTTCAATAATTACATTTTTCGAGTTATGATGAAAAGCATATTCTTGCAATTAATGGATAAGCAATTTCTAATGTTTTAATTCTTTTTGAGAAAAACTGATTTTCAGTTTTTTCTGAAAAGGCGAAAATTTTGAAATTGGAAAAATAAAATAAAAGCTATCTGTATATAGGATCCCACAACTCATAAAAGAGCAAACGAACCCCTTTTAAATTTCAAAAAGACATTTAGGCGGAAAACAGAAAAAGGCCGTGGCCTAGGAACCTCCTGCGGATGACGATGGCTTATAATTATCATCAGCACTTTTTACATATGTTAAAAATGACCAGCAATTTTATTCGAAAAAAATAAAAATAAATTTTAAATCGTACTTGTCTTATAATCATATCACAGTAAGTTGGCGAAAAAATACTCGCTAAAAACGCAAAAATAAGCATTCGAGGCCGAAAAAGAAAACACTAATCAAAACTATTGATTATTTACTGGATCAGCTTTCTGATCATGTATTGAAGGATTCCTCCGTTACGGTAGTAGGTGAGCTCAACCTCGGTATCAAATCTGCAGATGA</canonical>
            <polymorphic>CCCCATGGAAGTGAATTTTTGAAAATTCAGGTTTATACTGTGGAAATCTAGCAGCAGGGTTTTAAAAACCAGCCAGTCCAGGTGAAAATCTTGAAATTCAACAAAACATTTGAAAAAAAAAATATAATCTAACTTGAAAATGCATGAAAACTCTTCCTAAAAATTATTTCAACTAATATTTTTCTAGCAATTTAAACTTCGAGATTCAATTCATTATACTTTAAAATTTTCTTTTTTTCAATATCAAATTTTCCAGTTTCTTCTGCGGAATTCTGACATTTCCAGGTTTTCCAAAAAATCTAAAAAATTGAAAAAATCGAAACCAACTTTTAAAATGATTACAAAAACTCATAAAATAGCTCATGAAGCTCAAAAATATTTTGAAGCCGTAGGGACGGTAAACAGAATAAAGACCGTGGCCTAGGAACCTCTTTTTTTCAATAATTACATTTTTCGAGTTATGATGAAAAGCATATTCTTGCAATTAATGGATAAGCAAYTTCTAATGTTTTAATTCTTTTTGAGAAAAACTGATTTTCAGTTTTTTCTGAAAAGGCGAAAATTTTGAAATTGGAAAAATAAAATAAAAGCTATCTGTATATAGGATCCCACAACTCATAAAAGAGCAAACGAACCCCTTTTAAATTTCAAAAAGACATTTAGGCGGAAAACAGAAAAAGGCCGTGGCCTAGGAACCTCCTGCGGATGACGATGGCTTATAATTATCATCAGCACTTTTTACATATGTTAAAAATGACCAGCAATTTTATTCGAAAAAAATAAAAATAAATTTTAAATCGTACTTGTCTTATAATCATATCACAGTAAGTTGGCGAAAAAATACTCGCTAAAAACGCAAAAATAAGCATTCGAGGCCGAAAAAGAAAACACTAATCAAAACTATTGATTATTTACTGGATCAGCTTTCTGATCATGTATTGAAGGATTCCTCCGTTACGGTAGTAGGTGAGCTCAACCTCGGTATCAAATCTGCAGATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>212 137 77 75 71 67 48 42 40 37 27 26 22 22 19 17 15 15 13 10 8</canonical_bands>
                <polymorphic_bands>212 137 77 75 71 67 48 42 40 37 30 27 26 22 22 19 17 13 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGGGACGGTAAACAGAATAA</pcr_primer_p1>
		<pcr_primer_p2>GTTCGTTTGCTCTTTTATGAGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTAGGGACGGTAAACAGAATAAAGACCGTGGCCTAGGAACCTCTTTTTTTCAATAATTACATTTTTCGAGTTATGATGAAAAGCATATTCTTGCAATTAATGGATAAGCAATTTCTAATGTTTTAATTCTTTTTGAGAAAAACTGATTTTCAGTTTTTTCTGAAAAGGCGAAAATTTTGAAATTGGAAAAATAAAATAAAAGCTATCTGTATATAGGATCCCACAACTCATAAAAGAGCAAACGAAC</canonical_amplicon>
		<polymorphic_amplicon>GTAGGGACGGTAAACAGAATAAAGACCGTGGCCTAGGAACCTCTTTTTTTCAATAATTACATTTTTCGAGTTATGATGAAAAGCATATTCTTGCAATTAATGGATAAGCAAYTTCTAATGTTTTAATTCTTTTTGAGAAAAACTGATTTTCAGTTTTTTCTGAAAAGGCGAAAATTTTGAAATTGGAAAAATAAAATAAAAGCTATCTGTATATAGGATCCCACAACTCATAAAAGAGCAAACGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11464</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>117935</contig_pos>
        <strand>+</strand>
        <context>TTGCCATTCG[G/T]TAGATCCGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATCCCATGGGTAGAGCTTGACAGCTGGGCACTCCAATTGTTGCCATTCG</left_flank>
        <right_flank>TAGATCCGAGCTCAATGTTGGCGTAGACTTCACGGAAGAATTGTGGCTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTGGGATTCCGGCGTCCATGTATTTCTTGGCAGCGTCAAAGATGTCAAGCTCTTCTCCAGATGGAACATGAAGAGTGATTGGTCCGACCTTGGAAGCGAGCTTGTTGACCAAACGGATGTTGGCAAAGGTTCCACGAGCCATGATCTGAAAGTTTATTCAGTTATCGCGCCTGTTATGTTACGGATTCTTTCAAAAGTCGTCAACTCACCTCATCATTTCCACGACGAGCTCCATAGGTGTTGAAATCTCTCTGACCGACTCCGCGGCTGGCAAGGAATCTGGCGGCTGGAGACGTTTTCGAGATGGATCCAGCTGGCGAAATGTGGTCAGTAGTGACAGAATCACCCAAGTTCAAAAGAACATGAGCGTTGGTGATGTCAGACTGTGGTGGGAGCTCGTTGGTCATTCCATCGAAGAATGGAACCTTTTTGATGTAGGTCGAGTTGTCATCCCATGGGTAGAGCTTGACAGCTGGGCACTCCAATTGTTGCCATTCGTTAGATCCGAGCTCAATGTTGGCGTAGACTTCACGGAAGAATTGTGGCTTCACGAATTCCTCCTCGAACTTGGCAACTTCCGATCTTGTTGGCCAGATATCGGCGAGACGGATTTCTTTGCCATCTGGAGTCACTGCAAGCACTCCGTTGATGTCAACGTTGACGTTTCCAATGATCGAGTAGAGAACGGCCAATGGTGGGGATGCCAAGTAGTTGGCACGGACGTGTGGGTGGATGCGTCCTTCAAAGTTACGGTTTCCAGAGAGGACTCCAGCAACAACAAGGTTATTCTGAAACATTACGTCTTCCAAAAGTCAGTTTTTGGATTAAATTACCTCTTCAATAGCCTTGGTGACTGGCTCATCAAGTGGCCCAGAGTTTCCAATGCAAGTCATACATCCGTATCCAGCAATGTTGAATCCAATCTTCTCAAGGTATGGAAGGAGTCCAGAAGCCTCGAGATACTTGGTAACAACTCCAGAACCTGGAGAGAGGGAGGTC</canonical>
            <polymorphic>GCTGGGATTCCGGCGTCCATGTATTTCTTGGCAGCGTCAAAGATGTCAAGCTCTTCTCCAGATGGAACATGAAGAGTGATTGGTCCGACCTTGGAAGCGAGCTTGTTGACCAAACGGATGTTGGCAAAGGTTCCACGAGCCATGATCTGAAAGTTTATTCAGTTATCGCGCCTGTTATGTTACGGATTCTTTCAAAAGTCGTCAACTCACCTCATCATTTCCACGACGAGCTCCATAGGTGTTGAAATCTCTCTGACCGACTCCGCGGCTGGCAAGGAATCTGGCGGCTGGAGACGTTTTCGAGATGGATCCAGCTGGCGAAATGTGGTCAGTAGTGACAGAATCACCCAAGTTCAAAAGAACATGAGCGTTGGTGATGTCAGACTGTGGTGGGAGCTCGTTGGTCATTCCATCGAAGAATGGAACCTTTTTGATGTAGGTCGAGTTGTCATCCCATGGGTAGAGCTTGACAGCTGGGCACTCCAATTGTTGCCATTCGKTAGATCCGAGCTCAATGTTGGCGTAGACTTCACGGAAGAATTGTGGCTTCACGAATTCCTCCTCGAACTTGGCAACTTCCGATCTTGTTGGCCAGATATCGGCGAGACGGATTTCTTTGCCATCTGGAGTCACTGCAAGCACTCCGTTGATGTCAACGTTGACGTTTCCAATGATCGAGTAGAGAACGGCCAATGGTGGGGATGCCAAGTAGTTGGCACGGACGTGTGGGTGGATGCGTCCTTCAAAGTTACGGTTTCCAGAGAGGACTCCAGCAACAACAAGGTTATTCTGAAACATTACGTCTTCCAAAAGTCAGTTTTTGGATTAAATTACCTCTTCAATAGCCTTGGTGACTGGCTCATCAAGTGGCCCAGAGTTTCCAATGCAAGTCATACATCCGTATCCAGCAATGTTGAATCCAATCTTCTCAAGGTATGGAAGGAGTCCAGAAGCCTCGAGATACTTGGTAACAACTCCAGAACCTGGAGAGAGGGAGGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATGTAGGTCGAGTTGTCAT</pcr_primer_p1>
		<pcr_primer_p2>TCTCTACTCGATCATTGGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TGATGTAGGTCGAGTTGTCATCCCATGGGTAGAGCTTGACAGCTGGGCACTCCAATTGTTGCCATTCGTTAGATCCGAGCTCAATGTTGGCGTAGACTTCACGGAAGAATTGTGGCTTCACGAATTCCTCCTCGAACTTGGCAACTTCCGATCTTGTTGGCCAGATATCGGCGAGACGGATTTCTTTGCCATCTGGAGTCACTGCAAGCACTCCGTTGATGTCAACGTTGACGTTTCCAATGATCGAGTAGAGA</canonical_amplicon>
		<polymorphic_amplicon>TGATGTAGGTCGAGTTGTCATCCCATGGGTAGAGCTTGACAGCTGGGCACTCCAATTGTTGCCATTCGKTAGATCCGAGCTCAATGTTGGCGTAGACTTCACGGAAGAATTGTGGCTTCACGAATTCCTCCTCGAACTTGGCAACTTCCGATCTTGTTGGCCAGATATCGGCGAGACGGATTTCTTTGCCATCTGGAGTCACTGCAAGCACTCCGTTGATGTCAACGTTGACGTTTCCAATGATCGAGTAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11465</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>117733</contig_pos>
        <strand>+</strand>
        <context>CTGGAGACGT[C/T]TTCGAGATGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCTCTGACCGACTCCGCGGCTGGCAAGGAATCTGGCGGCTGGAGACGT</left_flank>
        <right_flank>TTCGAGATGGATCCAGCTGGCGAAATGTGGTCAGTAGTGACAGAATCACC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCTTTCCGGTGAGTCCCAAACTGTCGGCATTCTGTCCGGCTTGGAATTGGAATGGAATAATTCCCATACCGATCAAGTTCGAGCGATGGATTCTCTCGAAGCTTTCAGCAATAACAGCCTTGACTCCCTGAAGGAATGGTCCCTTGGCAGCCCAATCGCGAGACGATCCGCAACCGTATTCCTTTCCGGCAAGAATGATGGCTGGGATTCCGGCGTCCATGTATTTCTTGGCAGCGTCAAAGATGTCAAGCTCTTCTCCAGATGGAACATGAAGAGTGATTGGTCCGACCTTGGAAGCGAGCTTGTTGACCAAACGGATGTTGGCAAAGGTTCCACGAGCCATGATCTGAAAGTTTATTCAGTTATCGCGCCTGTTATGTTACGGATTCTTTCAAAAGTCGTCAACTCACCTCATCATTTCCACGACGAGCTCCATAGGTGTTGAAATCTCTCTGACCGACTCCGCGGCTGGCAAGGAATCTGGCGGCTGGAGACGTTTTCGAGATGGATCCAGCTGGCGAAATGTGGTCAGTAGTGACAGAATCACCCAAGTTCAAAAGAACATGAGCGTTGGTGATGTCAGACTGTGGTGGGAGCTCGTTGGTCATTCCATCGAAGAATGGAACCTTTTTGATGTAGGTCGAGTTGTCATCCCATGGGTAGAGCTTGACAGCTGGGCACTCCAATTGTTGCCATTCGTTAGATCCGAGCTCAATGTTGGCGTAGACTTCACGGAAGAATTGTGGCTTCACGAATTCCTCCTCGAACTTGGCAACTTCCGATCTTGTTGGCCAGATATCGGCGAGACGGATTTCTTTGCCATCTGGAGTCACTGCAAGCACTCCGTTGATGTCAACGTTGACGTTTCCAATGATCGAGTAGAGAACGGCCAATGGTGGGGATGCCAAGTAGTTGGCACGGACGTGTGGGTGGATGCGTCCTTCAAAGTTACGGTTTCCAGAGAGGACTCCAGCAACAACAAGGTTATTCTGAAACAT</canonical>
            <polymorphic>TTCCTTTCCGGTGAGTCCCAAACTGTCGGCATTCTGTCCGGCTTGGAATTGGAATGGAATAATTCCCATACCGATCAAGTTCGAGCGATGGATTCTCTCGAAGCTTTCAGCAATAACAGCCTTGACTCCCTGAAGGAATGGTCCCTTGGCAGCCCAATCGCGAGACGATCCGCAACCGTATTCCTTTCCGGCAAGAATGATGGCTGGGATTCCGGCGTCCATGTATTTCTTGGCAGCGTCAAAGATGTCAAGCTCTTCTCCAGATGGAACATGAAGAGTGATTGGTCCGACCTTGGAAGCGAGCTTGTTGACCAAACGGATGTTGGCAAAGGTTCCACGAGCCATGATCTGAAAGTTTATTCAGTTATCGCGCCTGTTATGTTACGGATTCTTTCAAAAGTCGTCAACTCACCTCATCATTTCCACGACGAGCTCCATAGGTGTTGAAATCTCTCTGACCGACTCCGCGGCTGGCAAGGAATCTGGCGGCTGGAGACGTYTTCGAGATGGATCCAGCTGGCGAAATGTGGTCAGTAGTGACAGAATCACCCAAGTTCAAAAGAACATGAGCGTTGGTGATGTCAGACTGTGGTGGGAGCTCGTTGGTCATTCCATCGAAGAATGGAACCTTTTTGATGTAGGTCGAGTTGTCATCCCATGGGTAGAGCTTGACAGCTGGGCACTCCAATTGTTGCCATTCGTTAGATCCGAGCTCAATGTTGGCGTAGACTTCACGGAAGAATTGTGGCTTCACGAATTCCTCCTCGAACTTGGCAACTTCCGATCTTGTTGGCCAGATATCGGCGAGACGGATTTCTTTGCCATCTGGAGTCACTGCAAGCACTCCGTTGATGTCAACGTTGACGTTTCCAATGATCGAGTAGAGAACGGCCAATGGTGGGGATGCCAAGTAGTTGGCACGGACGTGTGGGTGGATGCGTCCTTCAAAGTTACGGTTTCCAGAGAGGACTCCAGCAACAACAAGGTTATTCTGAAACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAAAGTCGTCAACTCAC</pcr_primer_p1>
		<pcr_primer_p2>CTACATCAAAAAGGTTCCATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAAAGTCGTCAACTCACCTCATCATTTCCACGACGAGCTCCATAGGTGTTGAAATCTCTCTGACCGACTCCGCGGCTGGCAAGGAATCTGGCGGCTGGAGACGTTTTCGAGATGGATCCAGCTGGCGAAATGTGGTCAGTAGTGACAGAATCACCCAAGTTCAAAAGAACATGAGCGTTGGTGATGTCAGACTGTGGTGGGAGCTCGTTGGTCATTCCATCGAAGAATGGAACCTTTTTGATGTAG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAAAGTCGTCAACTCACCTCATCATTTCCACGACGAGCTCCATAGGTGTTGAAATCTCTCTGACCGACTCCGCGGCTGGCAAGGAATCTGGCGGCTGGAGACGTYTTCGAGATGGATCCAGCTGGCGAAATGTGGTCAGTAGTGACAGAATCACCCAAGTTCAAAAGAACATGAGCGTTGGTGATGTCAGACTGTGGTGGGAGCTCGTTGGTCATTCCATCGAAGAATGGAACCTTTTTGATGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11477</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>212545</contig_pos>
        <strand>+</strand>
        <context>TTTCTTGGGA[A/G]ATGGCGTGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCATTTTTAGGTATTCTCTTTGTTGATTACCTGTGTCGGTTTCTTGGGA</left_flank>
        <right_flank>ATGGCGTGGGTCTTGACGACTTGCTCGACAAGTTGCTTGAGTCCAGCACG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTAGCTGAAATTCCGTAGCCGTACCTCTCCTTCTTTATTGAAGAGGATGGTTTGGACGTTGTTTCCGCTTCCGAACGAGTCTTCGGCGTCATAGACCAATTGATCAGGTGGCGAGGCGACTCCTTGGTTACGGGCAAAGATCTTGAGCGTCTTTCCGGCGCGGAGGACAAAGTCTCTTGGAACGGTGTAGACAATCTCGCGCTTTCCGTCGATACGTCTCTTCAGCTTCCACTCACCGATTGCCTGAAAAATTTGAATTCGAAAAAAAAAAAACAAAAAACGGTTAATACAAACCTCGTCCTTGGCACGATGAGTATTCTGGAGGACGATGTACTTTCCATCTGGCGATGCCTCGTGGATAGAAACATTTCCCTTGGCTGAACGTTGGAAGGATTGACGGGAGGCGGTCTCGCCCTTCACAACTCTCATCGTTTCTGAAATATCTAGTTCATTTTTAGGTATTCTCTTTGTTGATTACCTGTGTCGGTTTCTTGGGAAATGGCGTGGGTCTTGACGACTTGCTCGACAAGTTGCTTGAGTCCAGCACGGTTCTCCTCTCCTTCCAACATCTTTCTGTAGATGGCAATTTCGGCATCGAGGGTTTGCTTGGTATCGAGAAGCATCTGGAGCTCGACCATAAGGGCTTGGCATTCCTCGCGCATTTTTCTGATCTGCGAATCTCTGTCGTTGAGGGCAGCTTCGTATGATCTCTGGTCGTCTTCCAATTGATAGTTGAGCTCTTGGATTTGTTTCTCGAGAAGGGAGTTGCGAGATTCAAGATCAGCGAGTTTTCCACGCAGATCCGCAAGCTGGGTGCGAAGTCTTTTGACCTCTTCCTTGGCGTATCCTTGTTCCATGCTCTGTCTGGCTGACTGGGTCTGAATCTCTTGGACCTTGAGACGGTACCACGATTCCATATCATTACGGTGGACGTTGTTGACTTGGTCGTATTCCTCACGGATATCACGGATAGCAGAGGACAACTCGTTCTTGAAGAA</canonical>
            <polymorphic>AATTAGCTGAAATTCCGTAGCCGTACCTCTCCTTCTTTATTGAAGAGGATGGTTTGGACGTTGTTTCCGCTTCCGAACGAGTCTTCGGCGTCATAGACCAATTGATCAGGTGGCGAGGCGACTCCTTGGTTACGGGCAAAGATCTTGAGCGTCTTTCCGGCGCGGAGGACAAAGTCTCTTGGAACGGTGTAGACAATCTCGCGCTTTCCGTCGATACGTCTCTTCAGCTTCCACTCACCGATTGCCTGAAAAATTTGAATTCGAAAAAAAAAAAACAAAAAACGGTTAATACAAACCTCGTCCTTGGCACGATGAGTATTCTGGAGGACGATGTACTTTCCATCTGGCGATGCCTCGTGGATAGAAACATTTCCCTTGGCTGAACGTTGGAAGGATTGACGGGAGGCGGTCTCGCCCTTCACAACTCTCATCGTTTCTGAAATATCTAGTTCATTTTTAGGTATTCTCTTTGTTGATTACCTGTGTCGGTTTCTTGGGARATGGCGTGGGTCTTGACGACTTGCTCGACAAGTTGCTTGAGTCCAGCACGGTTCTCCTCTCCTTCCAACATCTTTCTGTAGATGGCAATTTCGGCATCGAGGGTTTGCTTGGTATCGAGAAGCATCTGGAGCTCGACCATAAGGGCTTGGCATTCCTCGCGCATTTTTCTGATCTGCGAATCTCTGTCGTTGAGGGCAGCTTCGTATGATCTCTGGTCGTCTTCCAATTGATAGTTGAGCTCTTGGATTTGTTTCTCGAGAAGGGAGTTGCGAGATTCAAGATCAGCGAGTTTTCCACGCAGATCCGCAAGCTGGGTGCGAAGTCTTTTGACCTCTTCCTTGGCGTATCCTTGTTCCATGCTCTGTCTGGCTGACTGGGTCTGAATCTCTTGGACCTTGAGACGGTACCACGATTCCATATCATTACGGTGGACGTTGTTGACTTGGTCGTATTCCTCACGGATATCACGGATAGCAGAGGACAACTCGTTCTTGAAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGACGATGTACTTTCCATCT</pcr_primer_p1>
		<pcr_primer_p2>AGATGTTGGAAGGAGAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGGACGATGTACTTTCCATCTGGCGATGCCTCGTGGATAGAAACATTTCCCTTGGCTGAACGTTGGAAGGATTGACGGGAGGCGGTCTCGCCCTTCACAACTCTCATCGTTTCTGAAATATCTAGTTCATTTTTAGGTATTCTCTTTGTTGATTACCTGTGTCGGTTTCTTGGGAAATGGCGTGGGTCTTGACGACTTGCTCGACAAGTTGCTTGAGTCCAGCACGGTTCTCCTCTCCTTCCAACATCT</canonical_amplicon>
		<polymorphic_amplicon>AGGACGATGTACTTTCCATCTGGCGATGCCTCGTGGATAGAAACATTTCCCTTGGCTGAACGTTGGAAGGATTGACGGGAGGCGGTCTCGCCCTTCACAACTCTCATCGTTTCTGAAATATCTAGTTCATTTTTAGGTATTCTCTTTGTTGATTACCTGTGTCGGTTTCTTGGGARATGGCGTGGGTCTTGACGACTTGCTCGACAAGTTGCTTGAGTCCAGCACGGTTCTCCTCTCCTTCCAACATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11478</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>212533</contig_pos>
        <strand>+</strand>
        <context>TACCTGTGTC[C/G]GTTTCTTGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGAAATATCTAGTTCATTTTTAGGTATTCTCTTTGTTGATTACCTGTGTC</left_flank>
        <right_flank>GTTTCTTGGGAAATGGCGTGGGTCTTGACGACTTGCTCGACAAGTTGCTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGTTTGAATTTAATTAGCTGAAATTCCGTAGCCGTACCTCTCCTTCTTTATTGAAGAGGATGGTTTGGACGTTGTTTCCGCTTCCGAACGAGTCTTCGGCGTCATAGACCAATTGATCAGGTGGCGAGGCGACTCCTTGGTTACGGGCAAAGATCTTGAGCGTCTTTCCGGCGCGGAGGACAAAGTCTCTTGGAACGGTGTAGACAATCTCGCGCTTTCCGTCGATACGTCTCTTCAGCTTCCACTCACCGATTGCCTGAAAAATTTGAATTCGAAAAAAAAAAAACAAAAAACGGTTAATACAAACCTCGTCCTTGGCACGATGAGTATTCTGGAGGACGATGTACTTTCCATCTGGCGATGCCTCGTGGATAGAAACATTTCCCTTGGCTGAACGTTGGAAGGATTGACGGGAGGCGGTCTCGCCCTTCACAACTCTCATCGTTTCTGAAATATCTAGTTCATTTTTAGGTATTCTCTTTGTTGATTACCTGTGTCGGTTTCTTGGGAAATGGCGTGGGTCTTGACGACTTGCTCGACAAGTTGCTTGAGTCCAGCACGGTTCTCCTCTCCTTCCAACATCTTTCTGTAGATGGCAATTTCGGCATCGAGGGTTTGCTTGGTATCGAGAAGCATCTGGAGCTCGACCATAAGGGCTTGGCATTCCTCGCGCATTTTTCTGATCTGCGAATCTCTGTCGTTGAGGGCAGCTTCGTATGATCTCTGGTCGTCTTCCAATTGATAGTTGAGCTCTTGGATTTGTTTCTCGAGAAGGGAGTTGCGAGATTCAAGATCAGCGAGTTTTCCACGCAGATCCGCAAGCTGGGTGCGAAGTCTTTTGACCTCTTCCTTGGCGTATCCTTGTTCCATGCTCTGTCTGGCTGACTGGGTCTGAATCTCTTGGACCTTGAGACGGTACCACGATTCCATATCATTACGGTGGACGTTGTTGACTTGGTCGTATTCCTCACGGATATCACGGATAGCAGAGGACAACTC</canonical>
            <polymorphic>CCGTTTGAATTTAATTAGCTGAAATTCCGTAGCCGTACCTCTCCTTCTTTATTGAAGAGGATGGTTTGGACGTTGTTTCCGCTTCCGAACGAGTCTTCGGCGTCATAGACCAATTGATCAGGTGGCGAGGCGACTCCTTGGTTACGGGCAAAGATCTTGAGCGTCTTTCCGGCGCGGAGGACAAAGTCTCTTGGAACGGTGTAGACAATCTCGCGCTTTCCGTCGATACGTCTCTTCAGCTTCCACTCACCGATTGCCTGAAAAATTTGAATTCGAAAAAAAAAAAACAAAAAACGGTTAATACAAACCTCGTCCTTGGCACGATGAGTATTCTGGAGGACGATGTACTTTCCATCTGGCGATGCCTCGTGGATAGAAACATTTCCCTTGGCTGAACGTTGGAAGGATTGACGGGAGGCGGTCTCGCCCTTCACAACTCTCATCGTTTCTGAAATATCTAGTTCATTTTTAGGTATTCTCTTTGTTGATTACCTGTGTCSGTTTCTTGGGAAATGGCGTGGGTCTTGACGACTTGCTCGACAAGTTGCTTGAGTCCAGCACGGTTCTCCTCTCCTTCCAACATCTTTCTGTAGATGGCAATTTCGGCATCGAGGGTTTGCTTGGTATCGAGAAGCATCTGGAGCTCGACCATAAGGGCTTGGCATTCCTCGCGCATTTTTCTGATCTGCGAATCTCTGTCGTTGAGGGCAGCTTCGTATGATCTCTGGTCGTCTTCCAATTGATAGTTGAGCTCTTGGATTTGTTTCTCGAGAAGGGAGTTGCGAGATTCAAGATCAGCGAGTTTTCCACGCAGATCCGCAAGCTGGGTGCGAAGTCTTTTGACCTCTTCCTTGGCGTATCCTTGTTCCATGCTCTGTCTGGCTGACTGGGTCTGAATCTCTTGGACCTTGAGACGGTACCACGATTCCATATCATTACGGTGGACGTTGTTGACTTGGTCGTATTCCTCACGGATATCACGGATAGCAGAGGACAACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGACGATGTACTTTCCATCT</pcr_primer_p1>
		<pcr_primer_p2>AGATGTTGGAAGGAGAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGGACGATGTACTTTCCATCTGGCGATGCCTCGTGGATAGAAACATTTCCCTTGGCTGAACGTTGGAAGGATTGACGGGAGGCGGTCTCGCCCTTCACAACTCTCATCGTTTCTGAAATATCTAGTTCATTTTTAGGTATTCTCTTTGTTGATTACCTGTGTCGGTTTCTTGGGAAATGGCGTGGGTCTTGACGACTTGCTCGACAAGTTGCTTGAGTCCAGCACGGTTCTCCTCTCCTTCCAACATCT</canonical_amplicon>
		<polymorphic_amplicon>AGGACGATGTACTTTCCATCTGGCGATGCCTCGTGGATAGAAACATTTCCCTTGGCTGAACGTTGGAAGGATTGACGGGAGGCGGTCTCGCCCTTCACAACTCTCATCGTTTCTGAAATATCTAGTTCATTTTTAGGTATTCTCTTTGTTGATTACCTGTGTCSGTTTCTTGGGAAATGGCGTGGGTCTTGACGACTTGCTCGACAAGTTGCTTGAGTCCAGCACGGTTCTCCTCTCCTTCCAACATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11479</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>212494</contig_pos>
        <strand>+</strand>
        <context>GAAATATCTA[A/G]TTCATTTTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGGGAGGCGGTCTCGCCCTTCACAACTCTCATCGTTTCTGAAATATCTA</left_flank>
        <right_flank>TTCATTTTTAGGTATTCTCTTTGTTGATTACCTGTGTCGGTTTCTTGGGA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGGCGTTGGATGTGGGTAGCACGTTCCTGAAAAAAAACCGTTTGAATTTAATTAGCTGAAATTCCGTAGCCGTACCTCTCCTTCTTTATTGAAGAGGATGGTTTGGACGTTGTTTCCGCTTCCGAACGAGTCTTCGGCGTCATAGACCAATTGATCAGGTGGCGAGGCGACTCCTTGGTTACGGGCAAAGATCTTGAGCGTCTTTCCGGCGCGGAGGACAAAGTCTCTTGGAACGGTGTAGACAATCTCGCGCTTTCCGTCGATACGTCTCTTCAGCTTCCACTCACCGATTGCCTGAAAAATTTGAATTCGAAAAAAAAAAAACAAAAAACGGTTAATACAAACCTCGTCCTTGGCACGATGAGTATTCTGGAGGACGATGTACTTTCCATCTGGCGATGCCTCGTGGATAGAAACATTTCCCTTGGCTGAACGTTGGAAGGATTGACGGGAGGCGGTCTCGCCCTTCACAACTCTCATCGTTTCTGAAATATCTAGTTCATTTTTAGGTATTCTCTTTGTTGATTACCTGTGTCGGTTTCTTGGGAAATGGCGTGGGTCTTGACGACTTGCTCGACAAGTTGCTTGAGTCCAGCACGGTTCTCCTCTCCTTCCAACATCTTTCTGTAGATGGCAATTTCGGCATCGAGGGTTTGCTTGGTATCGAGAAGCATCTGGAGCTCGACCATAAGGGCTTGGCATTCCTCGCGCATTTTTCTGATCTGCGAATCTCTGTCGTTGAGGGCAGCTTCGTATGATCTCTGGTCGTCTTCCAATTGATAGTTGAGCTCTTGGATTTGTTTCTCGAGAAGGGAGTTGCGAGATTCAAGATCAGCGAGTTTTCCACGCAGATCCGCAAGCTGGGTGCGAAGTCTTTTGACCTCTTCCTTGGCGTATCCTTGTTCCATGCTCTGTCTGGCTGACTGGGTCTGAATCTCTTGGACCTTGAGACGGTACCACGATTCCATATCATTACGGTGGACGTTGTTGACTTGGTC</canonical>
            <polymorphic>TCTGGCGTTGGATGTGGGTAGCACGTTCCTGAAAAAAAACCGTTTGAATTTAATTAGCTGAAATTCCGTAGCCGTACCTCTCCTTCTTTATTGAAGAGGATGGTTTGGACGTTGTTTCCGCTTCCGAACGAGTCTTCGGCGTCATAGACCAATTGATCAGGTGGCGAGGCGACTCCTTGGTTACGGGCAAAGATCTTGAGCGTCTTTCCGGCGCGGAGGACAAAGTCTCTTGGAACGGTGTAGACAATCTCGCGCTTTCCGTCGATACGTCTCTTCAGCTTCCACTCACCGATTGCCTGAAAAATTTGAATTCGAAAAAAAAAAAACAAAAAACGGTTAATACAAACCTCGTCCTTGGCACGATGAGTATTCTGGAGGACGATGTACTTTCCATCTGGCGATGCCTCGTGGATAGAAACATTTCCCTTGGCTGAACGTTGGAAGGATTGACGGGAGGCGGTCTCGCCCTTCACAACTCTCATCGTTTCTGAAATATCTARTTCATTTTTAGGTATTCTCTTTGTTGATTACCTGTGTCGGTTTCTTGGGAAATGGCGTGGGTCTTGACGACTTGCTCGACAAGTTGCTTGAGTCCAGCACGGTTCTCCTCTCCTTCCAACATCTTTCTGTAGATGGCAATTTCGGCATCGAGGGTTTGCTTGGTATCGAGAAGCATCTGGAGCTCGACCATAAGGGCTTGGCATTCCTCGCGCATTTTTCTGATCTGCGAATCTCTGTCGTTGAGGGCAGCTTCGTATGATCTCTGGTCGTCTTCCAATTGATAGTTGAGCTCTTGGATTTGTTTCTCGAGAAGGGAGTTGCGAGATTCAAGATCAGCGAGTTTTCCACGCAGATCCGCAAGCTGGGTGCGAAGTCTTTTGACCTCTTCCTTGGCGTATCCTTGTTCCATGCTCTGTCTGGCTGACTGGGTCTGAATCTCTTGGACCTTGAGACGGTACCACGATTCCATATCATTACGGTGGACGTTGTTGACTTGGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGACGATGTACTTTCCATCT</pcr_primer_p1>
		<pcr_primer_p2>AGATGTTGGAAGGAGAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGGACGATGTACTTTCCATCTGGCGATGCCTCGTGGATAGAAACATTTCCCTTGGCTGAACGTTGGAAGGATTGACGGGAGGCGGTCTCGCCCTTCACAACTCTCATCGTTTCTGAAATATCTAGTTCATTTTTAGGTATTCTCTTTGTTGATTACCTGTGTCGGTTTCTTGGGAAATGGCGTGGGTCTTGACGACTTGCTCGACAAGTTGCTTGAGTCCAGCACGGTTCTCCTCTCCTTCCAACATCT</canonical_amplicon>
		<polymorphic_amplicon>AGGACGATGTACTTTCCATCTGGCGATGCCTCGTGGATAGAAACATTTCCCTTGGCTGAACGTTGGAAGGATTGACGGGAGGCGGTCTCGCCCTTCACAACTCTCATCGTTTCTGAAATATCTARTTCATTTTTAGGTATTCTCTTTGTTGATTACCTGTGTCGGTTTCTTGGGAAATGGCGTGGGTCTTGACGACTTGCTCGACAAGTTGCTTGAGTCCAGCACGGTTCTCCTCTCCTTCCAACATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11480</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>233892</contig_pos>
        <strand>+</strand>
        <context>AGTATTATAA[C/T]TGCCTAACCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTATTATAA</left_flank>
        <right_flank>TGCCTAACCCATACTTACTGTTGCTTTCAAAAATAATGGAGCAGCCACAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGTACGGAGTGATGGTAACCGGGGAAAGAAAATAGTAAAAAACGAAGCTAAGAAGGACTAACCCGCAAGAGTTGATCCTAATGTGGGGAAGGAAAAGAGAGATAGTGGCAAGATCAAAGGGATGGGGGCAAGTCAGAAACGGGTAATCGAGATCTCAAGAAGTTTTTGGAATTGTGAGGGTGGTAAGAAGGTGGGGCAGTTCTTCACAATAGCGTTCCAAATTGGGATCGTTTGAGAAAAACAGTTCAAAGTGGTCTAAAAAAAAGTGCCTCTCAAAAATCGGTGAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTATTAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTAAATCTTTACAACCGAGCTATAGACTTTTGAAAATGGTCGTAATGTCAGAAAATCAAATTAACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTATTATAATTGCCTAACCCATACTTACTGTTGCTTTCAAAAATAATGGAGCAGCCACAGAAAATAGTAAAGATAGGACCGCGTGAGCTGTGATTTGAAACTTGACTCGAAGTGGCTCCGAAATCCTCGGGAGCACCGATAGAAGGAATAACCCTCCTACCAACGCATGCGGTATCATATAAAGATGGTCCTTGTACATTTTAAAATCAGACCATATCATTGTGATTAGCCCGACTTACGGGGGGGTGGGGGGGGGGGATAACACCAGTCGAACACTAAAGTCTCGACTGGTTCTTACACGAGTAAGTGGCAAATATAAGAAGCTCTCCCTGGGCGAGCACGGAGGTTTTGGAGGGGGCTAAGGGCCACAGAGATGGAACTAGAGAAAAAGAGCGCGAGCGGCGGGGCGGGCGGTCCATTCGTCACAGCACATCGCGGGGCAGATGGCTCGCGGAAGGAAAACCGAACGTGGTGAAGAACGTGGTGCACAAGAGAGAAGACACACAGAGG</canonical>
            <polymorphic>GAAGTACGGAGTGATGGTAACCGGGGAAAGAAAATAGTAAAAAACGAAGCTAAGAAGGACTAACCCGCAAGAGTTGATCCTAATGTGGGGAAGGAAAAGAGAGATAGTGGCAAGATCAAAGGGATGGGGGCAAGTCAGAAACGGGTAATCGAGATCTCAAGAAGTTTTTGGAATTGTGAGGGTGGTAAGAAGGTGGGGCAGTTCTTCACAATAGCGTTCCAAATTGGGATCGTTTGAGAAAAACAGTTCAAAGTGGTCTAAAAAAAAGTGCCTCTCAAAAATCGGTGAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTATTAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTAAATCTTTACAACCGAGCTATAGACTTTTGAAAATGGTCGTAATGTCAGAAAATCAAATTAACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTATTATAAYTGCCTAACCCATACTTACTGTTGCTTTCAAAAATAATGGAGCAGCCACAGAAAATAGTAAAGATAGGACCGCGTGAGCTGTGATTTGAAACTTGACTCGAAGTGGCTCCGAAATCCTCGGGAGCACCGATAGAAGGAATAACCCTCCTACCAACGCATGCGGTATCATATAAAGATGGTCCTTGTACATTTTAAAATCAGACCATATCATTGTGATTAGCCCGACTTACGGGGGGGTGGGGGGGGGGGATAACACCAGTCGAACACTAAAGTCTCGACTGGTTCTTACACGAGTAAGTGGCAAATATAAGAAGCTCTCCCTGGGCGAGCACGGAGGTTTTGGAGGGGGCTAAGGGCCACAGAGATGGAACTAGAGAAAAAGAGCGCGAGCGGCGGGGCGGGCGGTCCATTCGTCACAGCACATCGCGGGGCAGATGGCTCGCGGAAGGAAAACCGAACGTGGTGAAGAACGTGGTGCACAAGAGAGAAGACACACAGAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>503 171 109 73 60 50 34</canonical_bands>
                <polymorphic_bands>563 171 109 73 50 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGCAAGAGTTGATCCTAATG</pcr_primer_p1>
		<pcr_primer_p2>GCGGTCCTATCTTTACTATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>507</pcr_amplicon_size>
		<canonical_amplicon>CGCAAGAGTTGATCCTAATGTGGGGAAGGAAAAGAGAGATAGTGGCAAGATCAAAGGGATGGGGGCAAGTCAGAAACGGGTAATCGAGATCTCAAGAAGTTTTTGGAATTGTGAGGGTGGTAAGAAGGTGGGGCAGTTCTTCACAATAGCGTTCCAAATTGGGATCGTTTGAGAAAAACAGTTCAAAGTGGTCTAAAAAAAAGTGCCTCTCAAAAATCGGTGAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTATTAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTAAATCTTTACAACCGAGCTATAGACTTTTGAAAATGGTCGTAATGTCAGAAAATCAAATTAACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTATTATAATTGCCTAACCCATACTTACTGTTGCTTTCAAAAATAATGGAGCAGCCACAGAAAATAGTAAAGATAGGACCGC</canonical_amplicon>
		<polymorphic_amplicon>CGCAAGAGTTGATCCTAATGTGGGGAAGGAAAAGAGAGATAGTGGCAAGATCAAAGGGATGGGGGCAAGTCAGAAACGGGTAATCGAGATCTCAAGAAGTTTTTGGAATTGTGAGGGTGGTAAGAAGGTGGGGCAGTTCTTCACAATAGCGTTCCAAATTGGGATCGTTTGAGAAAAACAGTTCAAAGTGGTCTAAAAAAAAGTGCCTCTCAAAAATCGGTGAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTATTAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTAAATCTTTACAACCGAGCTATAGACTTTTGAAAATGGTCGTAATGTCAGAAAATCAAATTAACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTATTATAAYTGCCTAACCCATACTTACTGTTGCTTTCAAAAATAATGGAGCAGCCACAGAAAATAGTAAAGATAGGACCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11481</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>233911</contig_pos>
        <strand>+</strand>
        <context>CCATACTTAC[C/T]GTTGCTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTTTATGGCTCTTATTGACCAGTATTATAATTGCCTAACCCATACTTAC</left_flank>
        <right_flank>GTTGCTTTCAAAAATAATGGAGCAGCCACAGAAAATAGTAAAGATAGGAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCGGGGAAAGAAAATAGTAAAAAACGAAGCTAAGAAGGACTAACCCGCAAGAGTTGATCCTAATGTGGGGAAGGAAAAGAGAGATAGTGGCAAGATCAAAGGGATGGGGGCAAGTCAGAAACGGGTAATCGAGATCTCAAGAAGTTTTTGGAATTGTGAGGGTGGTAAGAAGGTGGGGCAGTTCTTCACAATAGCGTTCCAAATTGGGATCGTTTGAGAAAAACAGTTCAAAGTGGTCTAAAAAAAAGTGCCTCTCAAAAATCGGTGAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTATTAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTAAATCTTTACAACCGAGCTATAGACTTTTGAAAATGGTCGTAATGTCAGAAAATCAAATTAACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTATTATAATTGCCTAACCCATACTTACTGTTGCTTTCAAAAATAATGGAGCAGCCACAGAAAATAGTAAAGATAGGACCGCGTGAGCTGTGATTTGAAACTTGACTCGAAGTGGCTCCGAAATCCTCGGGAGCACCGATAGAAGGAATAACCCTCCTACCAACGCATGCGGTATCATATAAAGATGGTCCTTGTACATTTTAAAATCAGACCATATCATTGTGATTAGCCCGACTTACGGGGGGGTGGGGGGGGGGGATAACACCAGTCGAACACTAAAGTCTCGACTGGTTCTTACACGAGTAAGTGGCAAATATAAGAAGCTCTCCCTGGGCGAGCACGGAGGTTTTGGAGGGGGCTAAGGGCCACAGAGATGGAACTAGAGAAAAAGAGCGCGAGCGGCGGGGCGGGCGGTCCATTCGTCACAGCACATCGCGGGGCAGATGGCTCGCGGAAGGAAAACCGAACGTGGTGAAGAACGTGGTGCACAAGAGAGAAGACACACAGAGGCAAAAGAAACGGGACGCGC</canonical>
            <polymorphic>ACCGGGGAAAGAAAATAGTAAAAAACGAAGCTAAGAAGGACTAACCCGCAAGAGTTGATCCTAATGTGGGGAAGGAAAAGAGAGATAGTGGCAAGATCAAAGGGATGGGGGCAAGTCAGAAACGGGTAATCGAGATCTCAAGAAGTTTTTGGAATTGTGAGGGTGGTAAGAAGGTGGGGCAGTTCTTCACAATAGCGTTCCAAATTGGGATCGTTTGAGAAAAACAGTTCAAAGTGGTCTAAAAAAAAGTGCCTCTCAAAAATCGGTGAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTATTAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTAAATCTTTACAACCGAGCTATAGACTTTTGAAAATGGTCGTAATGTCAGAAAATCAAATTAACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTATTATAATTGCCTAACCCATACTTACYGTTGCTTTCAAAAATAATGGAGCAGCCACAGAAAATAGTAAAGATAGGACCGCGTGAGCTGTGATTTGAAACTTGACTCGAAGTGGCTCCGAAATCCTCGGGAGCACCGATAGAAGGAATAACCCTCCTACCAACGCATGCGGTATCATATAAAGATGGTCCTTGTACATTTTAAAATCAGACCATATCATTGTGATTAGCCCGACTTACGGGGGGGTGGGGGGGGGGGATAACACCAGTCGAACACTAAAGTCTCGACTGGTTCTTACACGAGTAAGTGGCAAATATAAGAAGCTCTCCCTGGGCGAGCACGGAGGTTTTGGAGGGGGCTAAGGGCCACAGAGATGGAACTAGAGAAAAAGAGCGCGAGCGGCGGGGCGGGCGGTCCATTCGTCACAGCACATCGCGGGGCAGATGGCTCGCGGAAGGAAAACCGAACGTGGTGAAGAACGTGGTGCACAAGAGAGAAGACACACAGAGGCAAAAGAAACGGGACGCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCAAGAGTTGATCCTAATG</pcr_primer_p1>
		<pcr_primer_p2>CGCGGTCCTATCTTTACTATT</pcr_primer_p2>
		<pcr_amplicon_size>508</pcr_amplicon_size>
		<canonical_amplicon>CGCAAGAGTTGATCCTAATGTGGGGAAGGAAAAGAGAGATAGTGGCAAGATCAAAGGGATGGGGGCAAGTCAGAAACGGGTAATCGAGATCTCAAGAAGTTTTTGGAATTGTGAGGGTGGTAAGAAGGTGGGGCAGTTCTTCACAATAGCGTTCCAAATTGGGATCGTTTGAGAAAAACAGTTCAAAGTGGTCTAAAAAAAAGTGCCTCTCAAAAATCGGTGAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTATTAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTAAATCTTTACAACCGAGCTATAGACTTTTGAAAATGGTCGTAATGTCAGAAAATCAAATTAACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTATTATAATTGCCTAACCCATACTTACTGTTGCTTTCAAAAATAATGGAGCAGCCACAGAAAATAGTAAAGATAGGACCGCG</canonical_amplicon>
		<polymorphic_amplicon>CGCAAGAGTTGATCCTAATGTGGGGAAGGAAAAGAGAGATAGTGGCAAGATCAAAGGGATGGGGGCAAGTCAGAAACGGGTAATCGAGATCTCAAGAAGTTTTTGGAATTGTGAGGGTGGTAAGAAGGTGGGGCAGTTCTTCACAATAGCGTTCCAAATTGGGATCGTTTGAGAAAAACAGTTCAAAGTGGTCTAAAAAAAAGTGCCTCTCAAAAATCGGTGAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTATTAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTAAATCTTTACAACCGAGCTATAGACTTTTGAAAATGGTCGTAATGTCAGAAAATCAAATTAACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTATTATAATTGCCTAACCCATACTTACYGTTGCTTTCAAAAATAATGGAGCAGCCACAGAAAATAGTAAAGATAGGACCGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11482</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>234015</contig_pos>
        <strand>+</strand>
        <context>ATCCTCGGGA[A/G]CACCGATAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGAGCTGTGATTTGAAACTTGACTCGAAGTGGCTCCGAAATCCTCGGGA</left_flank>
        <right_flank>CACCGATAGAAGGAATAACCCTCCTACCAACGCATGCGGTATCATATAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGGGGCAAGTCAGAAACGGGTAATCGAGATCTCAAGAAGTTTTTGGAATTGTGAGGGTGGTAAGAAGGTGGGGCAGTTCTTCACAATAGCGTTCCAAATTGGGATCGTTTGAGAAAAACAGTTCAAAGTGGTCTAAAAAAAAGTGCCTCTCAAAAATCGGTGAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTATTAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTAAATCTTTACAACCGAGCTATAGACTTTTGAAAATGGTCGTAATGTCAGAAAATCAAATTAACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTATTATAATTGCCTAACCCATACTTACTGTTGCTTTCAAAAATAATGGAGCAGCCACAGAAAATAGTAAAGATAGGACCGCGTGAGCTGTGATTTGAAACTTGACTCGAAGTGGCTCCGAAATCCTCGGGAGCACCGATAGAAGGAATAACCCTCCTACCAACGCATGCGGTATCATATAAAGATGGTCCTTGTACATTTTAAAATCAGACCATATCATTGTGATTAGCCCGACTTACGGGGGGGTGGGGGGGGGGGATAACACCAGTCGAACACTAAAGTCTCGACTGGTTCTTACACGAGTAAGTGGCAAATATAAGAAGCTCTCCCTGGGCGAGCACGGAGGTTTTGGAGGGGGCTAAGGGCCACAGAGATGGAACTAGAGAAAAAGAGCGCGAGCGGCGGGGCGGGCGGTCCATTCGTCACAGCACATCGCGGGGCAGATGGCTCGCGGAAGGAAAACCGAACGTGGTGAAGAACGTGGTGCACAAGAGAGAAGACACACAGAGGCAAAAGAAACGGGACGCGCCAAGTCGTCTGGGTGGGAGGGTGATGGTCAGTAGTTGCGCGTCCCTCGGAGAAGAATTCCCAAATGCCACTCTCTTTGAGCATTTCCAATGAGCTCCCTTGTGT</canonical>
            <polymorphic>ATGGGGGCAAGTCAGAAACGGGTAATCGAGATCTCAAGAAGTTTTTGGAATTGTGAGGGTGGTAAGAAGGTGGGGCAGTTCTTCACAATAGCGTTCCAAATTGGGATCGTTTGAGAAAAACAGTTCAAAGTGGTCTAAAAAAAAGTGCCTCTCAAAAATCGGTGAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTATTAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTAAATCTTTACAACCGAGCTATAGACTTTTGAAAATGGTCGTAATGTCAGAAAATCAAATTAACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTATTATAATTGCCTAACCCATACTTACTGTTGCTTTCAAAAATAATGGAGCAGCCACAGAAAATAGTAAAGATAGGACCGCGTGAGCTGTGATTTGAAACTTGACTCGAAGTGGCTCCGAAATCCTCGGGARCACCGATAGAAGGAATAACCCTCCTACCAACGCATGCGGTATCATATAAAGATGGTCCTTGTACATTTTAAAATCAGACCATATCATTGTGATTAGCCCGACTTACGGGGGGGTGGGGGGGGGGGATAACACCAGTCGAACACTAAAGTCTCGACTGGTTCTTACACGAGTAAGTGGCAAATATAAGAAGCTCTCCCTGGGCGAGCACGGAGGTTTTGGAGGGGGCTAAGGGCCACAGAGATGGAACTAGAGAAAAAGAGCGCGAGCGGCGGGGCGGGCGGTCCATTCGTCACAGCACATCGCGGGGCAGATGGCTCGCGGAAGGAAAACCGAACGTGGTGAAGAACGTGGTGCACAAGAGAGAAGACACACAGAGGCAAAAGAAACGGGACGCGCCAAGTCGTCTGGGTGGGAGGGTGATGGTCAGTAGTTGCGCGTCCCTCGGAGAAGAATTCCCAAATGCCACTCTCTTTGAGCATTTCCAATGAGCTCCCTTGTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 205 148 136 9</canonical_bands>
                <polymorphic_bands>707 148 136 9</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>502 205 148 136 9</canonical_bands>
                <polymorphic_bands>707 148 136 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATGGCTCTTATTGACCAGTAT</pcr_primer_p1>
		<pcr_primer_p2>ATCACAATGATATGGTCTGATTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTATGGCTCTTATTGACCAGTATTATAATTGCCTAACCCATACTTACTGTTGCTTTCAAAAATAATGGAGCAGCCACAGAAAATAGTAAAGATAGGACCGCGTGAGCTGTGATTTGAAACTTGACTCGAAGTGGCTCCGAAATCCTCGGGAGCACCGATAGAAGGAATAACCCTCCTACCAACGCATGCGGTATCATATAAAGATGGTCCTTGTACATTTTAAAATCAGACCATATCATTGTGAT</canonical_amplicon>
		<polymorphic_amplicon>TTATGGCTCTTATTGACCAGTATTATAATTGCCTAACCCATACTTACTGTTGCTTTCAAAAATAATGGAGCAGCCACAGAAAATAGTAAAGATAGGACCGCGTGAGCTGTGATTTGAAACTTGACTCGAAGTGGCTCCGAAATCCTCGGGARCACCGATAGAAGGAATAACCCTCCTACCAACGCATGCGGTATCATATAAAGATGGTCCTTGTACATTTTAAAATCAGACCATATCATTGTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11483</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>235529</contig_pos>
        <strand>+</strand>
        <context>AAATTTTTTT[C/T]AAAACTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGATGTAAACCCTAAAAACTGTCCTGTCTCCTCTACTTTGAAATTTTTTT</left_flank>
        <right_flank>AAAACTTTTTCTCTGAACTTTGAGCAATAATTCTTCAACACTGATCTTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGGCTCAAAGTTCAAATTTGTAATTTTCTTTTTGTTAGAGAAATGATAACAGTAAACTTTAAACCCATATATCTTAATTCCTGTGAAAGATATCAGAAAGTGGTCAACTAGCAAAATCTTTGTTATACTATGAAAATATTTAACCTCATTATATTATTTTCACGAAAAAAAAACGTTAAAATTTTGAAACCTGGAAAATCGCTTCAGAAGAAAATTTCAACATTTCTAAAATTAAAATTCTTGAATTCTTAAGTCCAGTGTTTTTATCTCACGCTTTTGTCTCGAAGCGATTTTTCGAATTTGCAACAATTTCCTGGTAGTAGCCGCTTTTAAAGAAGGGTAGGCCTCAAAAAGTAATTTTCTCATTTCTTTGTTCATAGTAGCCCCCAGATGTTAAACTGCTGGGCCACCTGTTGAATGTGCCATGTTGCTACCAGAGCAGGGGCAGATGTAAACCCTAAAAACTGTCCTGTCTCCTCTACTTTGAAATTTTTTTCAAAACTTTTTCTCTGAACTTTGAGCAATAATTCTTCAACACTGATCTTTTTTGTTTTCTGCAATAGATTTCAAACGAGAAAAAAAGCATCTGTTTCTTCAATAAAAATTCACATGTTTACTGGTGTCCACCATTGAACCAACTCTCAGGACCAGATGAATGAAAATATTCATGTTTTGATGTATAAGAAATGTGAACTTTCTCTCAAAATTTCTTTTGCATTGTTTCATTCTCATAATTTTCTGTAAAAAGCTTATCATTCGCCTTATCATCCGCCTACGAAATGTTGAATATCAATTTCTATTTCTGAAATCGTATCAACTAATCCCAAGTACACATGTTCTGTTCAGCGATTTCTAAGTTTAGAGCCTTAATGTGAATAATCGCTTCAGATACATCATTCAACTGGAATAGGTTTATTCGAATCACGTTTTCTTTCTCTTTAATCTAGAACAGAATTTCAGATTTTTCGAATTCATTCGTACATAGTTTGAACTGTGT</canonical>
            <polymorphic>AATTGGCTCAAAGTTCAAATTTGTAATTTTCTTTTTGTTAGAGAAATGATAACAGTAAACTTTAAACCCATATATCTTAATTCCTGTGAAAGATATCAGAAAGTGGTCAACTAGCAAAATCTTTGTTATACTATGAAAATATTTAACCTCATTATATTATTTTCACGAAAAAAAAACGTTAAAATTTTGAAACCTGGAAAATCGCTTCAGAAGAAAATTTCAACATTTCTAAAATTAAAATTCTTGAATTCTTAAGTCCAGTGTTTTTATCTCACGCTTTTGTCTCGAAGCGATTTTTCGAATTTGCAACAATTTCCTGGTAGTAGCCGCTTTTAAAGAAGGGTAGGCCTCAAAAAGTAATTTTCTCATTTCTTTGTTCATAGTAGCCCCCAGATGTTAAACTGCTGGGCCACCTGTTGAATGTGCCATGTTGCTACCAGAGCAGGGGCAGATGTAAACCCTAAAAACTGTCCTGTCTCCTCTACTTTGAAATTTTTTTYAAAACTTTTTCTCTGAACTTTGAGCAATAATTCTTCAACACTGATCTTTTTTGTTTTCTGCAATAGATTTCAAACGAGAAAAAAAGCATCTGTTTCTTCAATAAAAATTCACATGTTTACTGGTGTCCACCATTGAACCAACTCTCAGGACCAGATGAATGAAAATATTCATGTTTTGATGTATAAGAAATGTGAACTTTCTCTCAAAATTTCTTTTGCATTGTTTCATTCTCATAATTTTCTGTAAAAAGCTTATCATTCGCCTTATCATCCGCCTACGAAATGTTGAATATCAATTTCTATTTCTGAAATCGTATCAACTAATCCCAAGTACACATGTTCTGTTCAGCGATTTCTAAGTTTAGAGCCTTAATGTGAATAATCGCTTCAGATACATCATTCAACTGGAATAGGTTTATTCGAATCACGTTTTCTTTCTCTTTAATCTAGAACAGAATTTCAGATTTTTCGAATTCATTCGTACATAGTTTGAACTGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCATTTCTTTGTTCATAGTAGC</pcr_primer_p1>
		<pcr_primer_p2>GTGAATTTTTATTGAAGAAACAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTCATTTCTTTGTTCATAGTAGCCCCCAGATGTTAAACTGCTGGGCCACCTGTTGAATGTGCCATGTTGCTACCAGAGCAGGGGCAGATGTAAACCCTAAAAACTGTCCTGTCTCCTCTACTTTGAAATTTTTTTCAAAACTTTTTCTCTGAACTTTGAGCAATAATTCTTCAACACTGATCTTTTTTGTTTTCTGCAATAGATTTCAAACGAGAAAAAAAGCATCTGTTTCTTCAATAAAAATTCAC</canonical_amplicon>
		<polymorphic_amplicon>TCTCATTTCTTTGTTCATAGTAGCCCCCAGATGTTAAACTGCTGGGCCACCTGTTGAATGTGCCATGTTGCTACCAGAGCAGGGGCAGATGTAAACCCTAAAAACTGTCCTGTCTCCTCTACTTTGAAATTTTTTTYAAAACTTTTTCTCTGAACTTTGAGCAATAATTCTTCAACACTGATCTTTTTTGTTTTCTGCAATAGATTTCAAACGAGAAAAAAAGCATCTGTTTCTTCAATAAAAATTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11484</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>236088</contig_pos>
        <strand>+</strand>
        <context>CTAACATTTT[C/T]CCCCTGAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACCAGTTCGGAAGTTCGTGTGGTAAACAATCAGAACCCTCTAACATTTT</left_flank>
        <right_flank>CCCCTGAAATTTCCCGAAAGTTTGCTTCCTTTTCCGGTCTAGACCTGATA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAATAGATTTCAAACGAGAAAAAAAGCATCTGTTTCTTCAATAAAAATTCACATGTTTACTGGTGTCCACCATTGAACCAACTCTCAGGACCAGATGAATGAAAATATTCATGTTTTGATGTATAAGAAATGTGAACTTTCTCTCAAAATTTCTTTTGCATTGTTTCATTCTCATAATTTTCTGTAAAAAGCTTATCATTCGCCTTATCATCCGCCTACGAAATGTTGAATATCAATTTCTATTTCTGAAATCGTATCAACTAATCCCAAGTACACATGTTCTGTTCAGCGATTTCTAAGTTTAGAGCCTTAATGTGAATAATCGCTTCAGATACATCATTCAACTGGAATAGGTTTATTCGAATCACGTTTTCTTTCTCTTTAATCTAGAACAGAATTTCAGATTTTTCGAATTCATTCGTACATAGTTTGAACTGTGTTCCAGACAAACCAGTTCGGAAGTTCGTGTGGTAAACAATCAGAACCCTCTAACATTTTCCCCCTGAAATTTCCCGAAAGTTTGCTTCCTTTTCCGGTCTAGACCTGATAGTGTTCGTAACACAATAGGATTATTGTTTATAAGCCAGTTCAAAAATTTATTCATTGCTCAGTAGATGAGCCTCTCCACCATAGTAAACATTTTCTTGGGCGACTCGAGATATTTTTTATTATTTTTATGAATTTTTTTTTCTTGGTCCAAATTTGAGAAACCTCTGTCAAAATGTATGTCTATCTTCATACGGCTCCATCATCTCTTCCACAACAAGAATACTTGTATAGAATCAGTCAAGCTATCATGATAGAGCTATTGAAATCCACTTGGCTCCTACTTGGTTCCTATGAAGGTGAGTCAAGGCATACAGTAAACAAGTTGGTACTTCTTTAATTTCCGCTGCACGGATATGATCAGTTTCCTTGTGTTCTCATGTGTTCTTCAAACTTTCAGCTGCTCTGAATGATCTAACGTCTTCTAAAACTCTTAGATCGTATGAAGCTATG</canonical>
            <polymorphic>GCAATAGATTTCAAACGAGAAAAAAAGCATCTGTTTCTTCAATAAAAATTCACATGTTTACTGGTGTCCACCATTGAACCAACTCTCAGGACCAGATGAATGAAAATATTCATGTTTTGATGTATAAGAAATGTGAACTTTCTCTCAAAATTTCTTTTGCATTGTTTCATTCTCATAATTTTCTGTAAAAAGCTTATCATTCGCCTTATCATCCGCCTACGAAATGTTGAATATCAATTTCTATTTCTGAAATCGTATCAACTAATCCCAAGTACACATGTTCTGTTCAGCGATTTCTAAGTTTAGAGCCTTAATGTGAATAATCGCTTCAGATACATCATTCAACTGGAATAGGTTTATTCGAATCACGTTTTCTTTCTCTTTAATCTAGAACAGAATTTCAGATTTTTCGAATTCATTCGTACATAGTTTGAACTGTGTTCCAGACAAACCAGTTCGGAAGTTCGTGTGGTAAACAATCAGAACCCTCTAACATTTTYCCCCTGAAATTTCCCGAAAGTTTGCTTCCTTTTCCGGTCTAGACCTGATAGTGTTCGTAACACAATAGGATTATTGTTTATAAGCCAGTTCAAAAATTTATTCATTGCTCAGTAGATGAGCCTCTCCACCATAGTAAACATTTTCTTGGGCGACTCGAGATATTTTTTATTATTTTTATGAATTTTTTTTTCTTGGTCCAAATTTGAGAAACCTCTGTCAAAATGTATGTCTATCTTCATACGGCTCCATCATCTCTTCCACAACAAGAATACTTGTATAGAATCAGTCAAGCTATCATGATAGAGCTATTGAAATCCACTTGGCTCCTACTTGGTTCCTATGAAGGTGAGTCAAGGCATACAGTAAACAAGTTGGTACTTCTTTAATTTCCGCTGCACGGATATGATCAGTTTCCTTGTGTTCTCATGTGTTCTTCAAACTTTCAGCTGCTCTGAATGATCTAACGTCTTCTAAAACTCTTAGATCGTATGAAGCTATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTGAATAATCGCTTCAGATAC</pcr_primer_p1>
		<pcr_primer_p2>GTGTTACGAACACTATCAGGTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGTGAATAATCGCTTCAGATACATCATTCAACTGGAATAGGTTTATTCGAATCACGTTTTCTTTCTCTTTAATCTAGAACAGAATTTCAGATTTTTCGAATTCATTCGTACATAGTTTGAACTGTGTTCCAGACAAACCAGTTCGGAAGTTCGTGTGGTAAACAATCAGAACCCTCTAACATTTTCCCCCTGAAATTTCCCGAAAGTTTGCTTCCTTTTCCGGTCTAGACCTGATAGTGTTCGTAACAC</canonical_amplicon>
		<polymorphic_amplicon>ATGTGAATAATCGCTTCAGATACATCATTCAACTGGAATAGGTTTATTCGAATCACGTTTTCTTTCTCTTTAATCTAGAACAGAATTTCAGATTTTTCGAATTCATTCGTACATAGTTTGAACTGTGTTCCAGACAAACCAGTTCGGAAGTTCGTGTGGTAAACAATCAGAACCCTCTAACATTTTYCCCCTGAAATTTCCCGAAAGTTTGCTTCCTTTTCCGGTCTAGACCTGATAGTGTTCGTAACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11485</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>236012</contig_pos>
        <strand>+</strand>
        <context>ATTCATTCGT[A/G]CATAGTTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTTCTCTTTAATCTAGAACAGAATTTCAGATTTTTCGAATTCATTCGT</left_flank>
        <right_flank>CATAGTTTGAACTGTGTTCCAGACAAACCAGTTCGGAAGTTCGTGTGGTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTTGAAATTTTTTTCAAAACTTTTTCTCTGAACTTTGAGCAATAATTCTTCAACACTGATCTTTTTTGTTTTCTGCAATAGATTTCAAACGAGAAAAAAAGCATCTGTTTCTTCAATAAAAATTCACATGTTTACTGGTGTCCACCATTGAACCAACTCTCAGGACCAGATGAATGAAAATATTCATGTTTTGATGTATAAGAAATGTGAACTTTCTCTCAAAATTTCTTTTGCATTGTTTCATTCTCATAATTTTCTGTAAAAAGCTTATCATTCGCCTTATCATCCGCCTACGAAATGTTGAATATCAATTTCTATTTCTGAAATCGTATCAACTAATCCCAAGTACACATGTTCTGTTCAGCGATTTCTAAGTTTAGAGCCTTAATGTGAATAATCGCTTCAGATACATCATTCAACTGGAATAGGTTTATTCGAATCACGTTTTCTTTCTCTTTAATCTAGAACAGAATTTCAGATTTTTCGAATTCATTCGTACATAGTTTGAACTGTGTTCCAGACAAACCAGTTCGGAAGTTCGTGTGGTAAACAATCAGAACCCTCTAACATTTTCCCCCTGAAATTTCCCGAAAGTTTGCTTCCTTTTCCGGTCTAGACCTGATAGTGTTCGTAACACAATAGGATTATTGTTTATAAGCCAGTTCAAAAATTTATTCATTGCTCAGTAGATGAGCCTCTCCACCATAGTAAACATTTTCTTGGGCGACTCGAGATATTTTTTATTATTTTTATGAATTTTTTTTTCTTGGTCCAAATTTGAGAAACCTCTGTCAAAATGTATGTCTATCTTCATACGGCTCCATCATCTCTTCCACAACAAGAATACTTGTATAGAATCAGTCAAGCTATCATGATAGAGCTATTGAAATCCACTTGGCTCCTACTTGGTTCCTATGAAGGTGAGTCAAGGCATACAGTAAACAAGTTGGTACTTCTTTAATTTCCGCTGCACGGATATGATCAGTTTCCTTGTGTTC</canonical>
            <polymorphic>ACTTTGAAATTTTTTTCAAAACTTTTTCTCTGAACTTTGAGCAATAATTCTTCAACACTGATCTTTTTTGTTTTCTGCAATAGATTTCAAACGAGAAAAAAAGCATCTGTTTCTTCAATAAAAATTCACATGTTTACTGGTGTCCACCATTGAACCAACTCTCAGGACCAGATGAATGAAAATATTCATGTTTTGATGTATAAGAAATGTGAACTTTCTCTCAAAATTTCTTTTGCATTGTTTCATTCTCATAATTTTCTGTAAAAAGCTTATCATTCGCCTTATCATCCGCCTACGAAATGTTGAATATCAATTTCTATTTCTGAAATCGTATCAACTAATCCCAAGTACACATGTTCTGTTCAGCGATTTCTAAGTTTAGAGCCTTAATGTGAATAATCGCTTCAGATACATCATTCAACTGGAATAGGTTTATTCGAATCACGTTTTCTTTCTCTTTAATCTAGAACAGAATTTCAGATTTTTCGAATTCATTCGTRCATAGTTTGAACTGTGTTCCAGACAAACCAGTTCGGAAGTTCGTGTGGTAAACAATCAGAACCCTCTAACATTTTCCCCCTGAAATTTCCCGAAAGTTTGCTTCCTTTTCCGGTCTAGACCTGATAGTGTTCGTAACACAATAGGATTATTGTTTATAAGCCAGTTCAAAAATTTATTCATTGCTCAGTAGATGAGCCTCTCCACCATAGTAAACATTTTCTTGGGCGACTCGAGATATTTTTTATTATTTTTATGAATTTTTTTTTCTTGGTCCAAATTTGAGAAACCTCTGTCAAAATGTATGTCTATCTTCATACGGCTCCATCATCTCTTCCACAACAAGAATACTTGTATAGAATCAGTCAAGCTATCATGATAGAGCTATTGAAATCCACTTGGCTCCTACTTGGTTCCTATGAAGGTGAGTCAAGGCATACAGTAAACAAGTTGGTACTTCTTTAATTTCCGCTGCACGGATATGATCAGTTTCCTTGTGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>454 349 150 47</canonical_bands>
                <polymorphic_bands>604 349 47</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTGAATAATCGCTTCAGATAC</pcr_primer_p1>
		<pcr_primer_p2>GTGTTACGAACACTATCAGGTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGTGAATAATCGCTTCAGATACATCATTCAACTGGAATAGGTTTATTCGAATCACGTTTTCTTTCTCTTTAATCTAGAACAGAATTTCAGATTTTTCGAATTCATTCGTACATAGTTTGAACTGTGTTCCAGACAAACCAGTTCGGAAGTTCGTGTGGTAAACAATCAGAACCCTCTAACATTTTCCCCCTGAAATTTCCCGAAAGTTTGCTTCCTTTTCCGGTCTAGACCTGATAGTGTTCGTAACAC</canonical_amplicon>
		<polymorphic_amplicon>ATGTGAATAATCGCTTCAGATACATCATTCAACTGGAATAGGTTTATTCGAATCACGTTTTCTTTCTCTTTAATCTAGAACAGAATTTCAGATTTTTCGAATTCATTCGTRCATAGTTTGAACTGTGTTCCAGACAAACCAGTTCGGAAGTTCGTGTGGTAAACAATCAGAACCCTCTAACATTTTCCCCCTGAAATTTCCCGAAAGTTTGCTTCCTTTTCCGGTCTAGACCTGATAGTGTTCGTAACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11486</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>310597</contig_pos>
        <strand></strand>
        <context>gaaagtgata[A/T]aaatgaccca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATA</left_flank>
        <right_flank>AAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAATTAAGAGGGTTCAAGGATTCGGAGGTACAACGGGTCACAAACGATATAGTGACACAAAAGCCAAACTCGGGGCTTAGAATTCGAATTTTTCAAGTAATTTGCACCCCCGACACAAGGGTTTTGTAACCTCAAATCGGCATGTACTCCAGTGACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCATTATTTGCGGTCCGAACGATGACTCCATGTGTCCGAACGGCTATTACTGTCATATCGGCGAGAACCCGGAACTGACGGCTTGCTGCGAGAACAGTGGACGTGAGCATTTTTTTCTTTATTGTACCTGGCTGTCCATTTCTATTTGTTTTCTACTCCGCTTTTCCCCCAGTACCTT</canonical>
            <polymorphic>ATAATTAAGAGGGTTCAAGGATTCGGAGGTACAACGGGTCACAAACGATATAGTGACACAAAAGCCAAACTCGGGGCTTAGAATTCGAATTTTTCAAGTAATTTGCACCCCCGACACAAGGGTTTTGTAACCTCAAATCGGCATGTACTCCAGTGACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAWAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCATTATTTGCGGTCCGAACGATGACTCCATGTGTCCGAACGGCTATTACTGTCATATCGGCGAGAACCCGGAACTGACGGCTTGCTGCGAGAACAGTGGACGTGAGCATTTTTTTCTTTATTGTACCTGGCTGTCCATTTCTATTTGTTTTCTACTCCGCTTTTCCCCCAGTACCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCCCAAAGTTTTCATACC</pcr_primer_p1>
		<pcr_primer_p2>CTATTTAAACATCAAATCGTCGT</pcr_primer_p2>
		<pcr_amplicon_size>436</pcr_amplicon_size>
		<canonical_amplicon>GACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAG</canonical_amplicon>
		<polymorphic_amplicon>GACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAWAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11487</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>310609</contig_pos>
        <strand></strand>
        <context>aatgacccaa[T/A]atyagstgaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAA</left_flank>
        <right_flank>ATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCAAGGATTCGGAGGTACAACGGGTCACAAACGATATAGTGACACAAAAGCCAAACTCGGGGCTTAGAATTCGAATTTTTCAAGTAATTTGCACCCCCGACACAAGGGTTTTGTAACCTCAAATCGGCATGTACTCCAGTGACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCATTATTTGCGGTCCGAACGATGACTCCATGTGTCCGAACGGCTATTACTGTCATATCGGCGAGAACCCGGAACTGACGGCTTGCTGCGAGAACAGTGGACGTGAGCATTTTTTTCTTTATTGTACCTGGCTGTCCATTTCTATTTGTTTTCTACTCCGCTTTTCCCCCAGTACCTTTTCAAAATTTTT</canonical>
            <polymorphic>GTTCAAGGATTCGGAGGTACAACGGGTCACAAACGATATAGTGACACAAAAGCCAAACTCGGGGCTTAGAATTCGAATTTTTCAAGTAATTTGCACCCCCGACACAAGGGTTTTGTAACCTCAAATCGGCATGTACTCCAGTGACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAAWATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCATTATTTGCGGTCCGAACGATGACTCCATGTGTCCGAACGGCTATTACTGTCATATCGGCGAGAACCCGGAACTGACGGCTTGCTGCGAGAACAGTGGACGTGAGCATTTTTTTCTTTATTGTACCTGGCTGTCCATTTCTATTTGTTTTCTACTCCGCTTTTCCCCCAGTACCTTTTCAAAATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACCCCAAAGTTTTCATACC</pcr_primer_p1>
		<pcr_primer_p2>CTATTTAAACATCAAATCGTCGT</pcr_primer_p2>
		<pcr_amplicon_size>436</pcr_amplicon_size>
		<canonical_amplicon>GACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAG</canonical_amplicon>
		<polymorphic_amplicon>GACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAAWATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11488</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>310612</contig_pos>
        <strand></strand>
        <context>gacccaawat[T/C]agstgaaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATAT</left_flank>
        <right_flank>AGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAGGATTCGGAGGTACAACGGGTCACAAACGATATAGTGACACAAAAGCCAAACTCGGGGCTTAGAATTCGAATTTTTCAAGTAATTTGCACCCCCGACACAAGGGTTTTGTAACCTCAAATCGGCATGTACTCCAGTGACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCATTATTTGCGGTCCGAACGATGACTCCATGTGTCCGAACGGCTATTACTGTCATATCGGCGAGAACCCGGAACTGACGGCTTGCTGCGAGAACAGTGGACGTGAGCATTTTTTTCTTTATTGTACCTGGCTGTCCATTTCTATTTGTTTTCTACTCCGCTTTTCCCCCAGTACCTTTTCAAAATTTTTGTT</canonical>
            <polymorphic>CAAGGATTCGGAGGTACAACGGGTCACAAACGATATAGTGACACAAAAGCCAAACTCGGGGCTTAGAATTCGAATTTTTCAAGTAATTTGCACCCCCGACACAAGGGTTTTGTAACCTCAAATCGGCATGTACTCCAGTGACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATYAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCATTATTTGCGGTCCGAACGATGACTCCATGTGTCCGAACGGCTATTACTGTCATATCGGCGAGAACCCGGAACTGACGGCTTGCTGCGAGAACAGTGGACGTGAGCATTTTTTTCTTTATTGTACCTGGCTGTCCATTTCTATTTGTTTTCTACTCCGCTTTTCCCCCAGTACCTTTTCAAAATTTTTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACCCCAAAGTTTTCATACC</pcr_primer_p1>
		<pcr_primer_p2>CTATTTAAACATCAAATCGTCGT</pcr_primer_p2>
		<pcr_amplicon_size>436</pcr_amplicon_size>
		<canonical_amplicon>GACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAG</canonical_amplicon>
		<polymorphic_amplicon>GACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATYAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11489</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>310615</contig_pos>
        <strand></strand>
        <context>ccaawatyag[G/C]tgaaaaacac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>ACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAG</left_flank>
        <right_flank>TGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATTCGGAGGTACAACGGGTCACAAACGATATAGTGACACAAAAGCCAAACTCGGGGCTTAGAATTCGAATTTTTCAAGTAATTTGCACCCCCGACACAAGGGTTTTGTAACCTCAAATCGGCATGTACTCCAGTGACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCATTATTTGCGGTCCGAACGATGACTCCATGTGTCCGAACGGCTATTACTGTCATATCGGCGAGAACCCGGAACTGACGGCTTGCTGCGAGAACAGTGGACGTGAGCATTTTTTTCTTTATTGTACCTGGCTGTCCATTTCTATTTGTTTTCTACTCCGCTTTTCCCCCAGTACCTTTTCAAAATTTTTGTTTAT</canonical>
            <polymorphic>GGATTCGGAGGTACAACGGGTCACAAACGATATAGTGACACAAAAGCCAAACTCGGGGCTTAGAATTCGAATTTTTCAAGTAATTTGCACCCCCGACACAAGGGTTTTGTAACCTCAAATCGGCATGTACTCCAGTGACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGSTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCATTATTTGCGGTCCGAACGATGACTCCATGTGTCCGAACGGCTATTACTGTCATATCGGCGAGAACCCGGAACTGACGGCTTGCTGCGAGAACAGTGGACGTGAGCATTTTTTTCTTTATTGTACCTGGCTGTCCATTTCTATTTGTTTTCTACTCCGCTTTTCCCCCAGTACCTTTTCAAAATTTTTGTTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>504 377 53 46 20</canonical_bands>
                <polymorphic_bands>881 53 46 20</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>182 92 91 74 73 66 65 61 49 47 43 39 28 24 23 14 9 7 6 4 3</canonical_bands>
                <polymorphic_bands>182 92 91 74 73 66 65 61 49 47 43 39 31 28 23 14 9 6 4 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACCCCAAAGTTTTCATACC</pcr_primer_p1>
		<pcr_primer_p2>CTATTTAAACATCAAATCGTCGT</pcr_primer_p2>
		<pcr_amplicon_size>436</pcr_amplicon_size>
		<canonical_amplicon>GACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAG</canonical_amplicon>
		<polymorphic_amplicon>GACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGSTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11490</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>310638</contig_pos>
        <strand></strand>
        <context>tttcatatat[A/G]ttatagctgg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATAT</left_flank>
        <right_flank>TTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAACGATATAGTGACACAAAAGCCAAACTCGGGGCTTAGAATTCGAATTTTTCAAGTAATTTGCACCCCCGACACAAGGGTTTTGTAACCTCAAATCGGCATGTACTCCAGTGACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCATTATTTGCGGTCCGAACGATGACTCCATGTGTCCGAACGGCTATTACTGTCATATCGGCGAGAACCCGGAACTGACGGCTTGCTGCGAGAACAGTGGACGTGAGCATTTTTTTCTTTATTGTACCTGGCTGTCCATTTCTATTTGTTTTCTACTCCGCTTTTCCCCCAGTACCTTTTCAAAATTTTTGTTTATTTTCATTTTACAGTGACCGATCC</canonical>
            <polymorphic>CAAACGATATAGTGACACAAAAGCCAAACTCGGGGCTTAGAATTCGAATTTTTCAAGTAATTTGCACCCCCGACACAAGGGTTTTGTAACCTCAAATCGGCATGTACTCCAGTGACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATRTTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCATTATTTGCGGTCCGAACGATGACTCCATGTGTCCGAACGGCTATTACTGTCATATCGGCGAGAACCCGGAACTGACGGCTTGCTGCGAGAACAGTGGACGTGAGCATTTTTTTCTTTATTGTACCTGGCTGTCCATTTCTATTTGTTTTCTACTCCGCTTTTCCCCCAGTACCTTTTCAAAATTTTTGTTTATTTTCATTTTACAGTGACCGATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCCCAAAGTTTTCATACC</pcr_primer_p1>
		<pcr_primer_p2>CACTTTCTACCTATTTAAACATCAAA</pcr_primer_p2>
		<pcr_amplicon_size>446</pcr_amplicon_size>
		<canonical_amplicon>GACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTG</canonical_amplicon>
		<polymorphic_amplicon>GACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATRTTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11491</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>310662</contig_pos>
        <strand>+</strand>
        <context>tgtATTGGAG[C/T]GTACGACGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAG</left_flank>
        <right_flank>GTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAACTCGGGGCTTAGAATTCGAATTTTTCAAGTAATTTGCACCCCCGACACAAGGGTTTTGTAACCTCAAATCGGCATGTACTCCAGTGACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCATTATTTGCGGTCCGAACGATGACTCCATGTGTCCGAACGGCTATTACTGTCATATCGGCGAGAACCCGGAACTGACGGCTTGCTGCGAGAACAGTGGACGTGAGCATTTTTTTCTTTATTGTACCTGGCTGTCCATTTCTATTTGTTTTCTACTCCGCTTTTCCCCCAGTACCTTTTCAAAATTTTTGTTTATTTTCATTTTACAGTGACCGATCCTTGCTTACTCTCCATCAATGTTGG</canonical>
            <polymorphic>CAAACTCGGGGCTTAGAATTCGAATTTTTCAAGTAATTTGCACCCCCGACACAAGGGTTTTGTAACCTCAAATCGGCATGTACTCCAGTGACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGYGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCATTATTTGCGGTCCGAACGATGACTCCATGTGTCCGAACGGCTATTACTGTCATATCGGCGAGAACCCGGAACTGACGGCTTGCTGCGAGAACAGTGGACGTGAGCATTTTTTTCTTTATTGTACCTGGCTGTCCATTTCTATTTGTTTTCTACTCCGCTTTTCCCCCAGTACCTTTTCAAAATTTTTGTTTATTTTCATTTTACAGTGACCGATCCTTGCTTACTCTCCATCAATGTTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGTACG</site>
                <isoschizomers>
                    <enzyme>BsiWI</enzyme>
                    <enzyme>Pfl23II</enzyme>
                    <enzyme>PspLI</enzyme>
                    <enzyme>SplI</enzyme>
                    <enzyme>SunI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACCCCAAAGTTTTCATACC</pcr_primer_p1>
		<pcr_primer_p2>TGTCTATTAGTGGGACAAAATATC</pcr_primer_p2>
		<pcr_amplicon_size>499</pcr_amplicon_size>
		<canonical_amplicon>GACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACA</canonical_amplicon>
		<polymorphic_amplicon>GACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGYGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11492</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>312816</contig_pos>
        <strand>+</strand>
        <context>CGGTCAAGGC[A/G]TCGAAAAGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACTTTCAGCTCGTCGTCCATGTGACCTACCACTTGAGGTCGGTCAAGGC</left_flank>
        <right_flank>TCGAAAAGCTCGAGCGTTGGTTCTTCGACGGCGGAATTCAAATGTGTCGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCCAAAATTTTCAAAAGGTTTAGATCGACTCGATCTCTACACTTTGGAACTAAAAAATCAATAGTTTAGTTTTTTAAAGCAATTTTATTAATTTCAGACGGTGACCCTTGCCAACAGCCACTTGCTATCGGAACCGGAGGATTCTCAATCACCAGATACTACTACGACAAGGAAACCCGCAGATGTCGTGAATTTGCCTACGAAGGACAGAAGGGAAATGCCAATAATTTCTTGACCGGAGAAGATTGTGGTCTCGTGTGTCCAGTACTTCCAAACCCTTGCAGTTTGGGCGAGCCACTGCTCAGTCTGCAGAAAGAGCCGGTGATTTGTGGAGGAGAAGACACCTGTCCAAACGGATACTATTGTCATGTCGGAGGAGCGCCAGAAACGACCAACTGCTGTCCTGGAAGTTTGTAATGTTGAACTTGACCCTCATCAAGTTTCTTATACTTTCAGCTCGTCGTCCATGTGACCTACCACTTGAGGTCGGTCAAGGCATCGAAAAGCTCGAGCGTTGGTTCTTCGACGGCGGAATTCAAATGTGTCGTCCATTTGTTTACAAGGGAATGAAAGGAAACTCGAACAACTTCCTAACCAAACAGTCGTGCCGACAAGCTTGTAAGGAAATGAACCCGTGCGGTTATGGCGATCCGTTGGTCGACACCGCTGGAGAACGCATCTTGTGTACCGGAGGACAACGAGTGGATAGTTGTCCACAGAACAGCTACTGCCACGTTGGATCAAGTGCTTTGACCACTTTGTGCTGTCCAAAGAGAAGTGAGGAAGTTAGCTATACTATACCAGTCAATAAGATATACCAAGATGTATTTTTCAGAGGATTTTCGAGCCTTTGGACATTTTTAAGGGTCTGAAGCTCGGCTGTCAAGTTTTCAAACATTTTGAATTTTTTTGTTGGGTGTAAAACATTCCAGTTTGAAAATTCTGCATTCATATAACCTTTCGAGAAATCCTAGGTTTTGGTGTTTTTTCAGAAACCG</canonical>
            <polymorphic>TATCCAAAATTTTCAAAAGGTTTAGATCGACTCGATCTCTACACTTTGGAACTAAAAAATCAATAGTTTAGTTTTTTAAAGCAATTTTATTAATTTCAGACGGTGACCCTTGCCAACAGCCACTTGCTATCGGAACCGGAGGATTCTCAATCACCAGATACTACTACGACAAGGAAACCCGCAGATGTCGTGAATTTGCCTACGAAGGACAGAAGGGAAATGCCAATAATTTCTTGACCGGAGAAGATTGTGGTCTCGTGTGTCCAGTACTTCCAAACCCTTGCAGTTTGGGCGAGCCACTGCTCAGTCTGCAGAAAGAGCCGGTGATTTGTGGAGGAGAAGACACCTGTCCAAACGGATACTATTGTCATGTCGGAGGAGCGCCAGAAACGACCAACTGCTGTCCTGGAAGTTTGTAATGTTGAACTTGACCCTCATCAAGTTTCTTATACTTTCAGCTCGTCGTCCATGTGACCTACCACTTGAGGTCGGTCAAGGCRTCGAAAAGCTCGAGCGTTGGTTCTTCGACGGCGGAATTCAAATGTGTCGTCCATTTGTTTACAAGGGAATGAAAGGAAACTCGAACAACTTCCTAACCAAACAGTCGTGCCGACAAGCTTGTAAGGAAATGAACCCGTGCGGTTATGGCGATCCGTTGGTCGACACCGCTGGAGAACGCATCTTGTGTACCGGAGGACAACGAGTGGATAGTTGTCCACAGAACAGCTACTGCCACGTTGGATCAAGTGCTTTGACCACTTTGTGCTGTCCAAAGAGAAGTGAGGAAGTTAGCTATACTATACCAGTCAATAAGATATACCAAGATGTATTTTTCAGAGGATTTTCGAGCCTTTGGACATTTTTAAGGGTCTGAAGCTCGGCTGTCAAGTTTTCAAACATTTTGAATTTTTTTGTTGGGTGTAAAACATTCCAGTTTGAAAATTCTGCATTCATATAACCTTTCGAGAAATCCTAGGTTTTGGTGTTTTTTCAGAAACCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACTATTGTCATGTCGGAGGA</pcr_primer_p1>
		<pcr_primer_p2>GACTGTTTGGTTAGGAAGTTGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATACTATTGTCATGTCGGAGGAGCGCCAGAAACGACCAACTGCTGTCCTGGAAGTTTGTAATGTTGAACTTGACCCTCATCAAGTTTCTTATACTTTCAGCTCGTCGTCCATGTGACCTACCACTTGAGGTCGGTCAAGGCATCGAAAAGCTCGAGCGTTGGTTCTTCGACGGCGGAATTCAAATGTGTCGTCCATTTGTTTACAAGGGAATGAAAGGAAACTCGAACAACTTCCTAACCAAACAGTC</canonical_amplicon>
		<polymorphic_amplicon>ATACTATTGTCATGTCGGAGGAGCGCCAGAAACGACCAACTGCTGTCCTGGAAGTTTGTAATGTTGAACTTGACCCTCATCAAGTTTCTTATACTTTCAGCTCGTCGTCCATGTGACCTACCACTTGAGGTCGGTCAAGGCRTCGAAAAGCTCGAGCGTTGGTTCTTCGACGGCGGAATTCAAATGTGTCGTCCATTTGTTTACAAGGGAATGAAAGGAAACTCGAACAACTTCCTAACCAAACAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11493</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>313726</contig_pos>
        <strand></strand>
        <context>gtattttatt[T/G]acCAACATAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATT</left_flank>
        <right_flank>ACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGTTGGGTGTAAAACATTCCAGTTTGAAAATTCTGCATTCATATAACCTTTCGAGAAATCCTAGGTTTTGGTGTTTTTTCAGAAACCGGCAAACACAGTTAAATCTGCAATATAGCGCCGTAGACTTTCTATTTTTCTGATTGGTGTTTTGAGAAGATGCGAGGTAGGAAAAGTGTGTTTTCAACTTGATCAACAGAGTACCAAAGTAAAAAAATGGTGCGAAATTTTTATATTTCACTGCTACTCTGTAATCAAATAAAAAAAACTTCACTTTGCTCTCTGCAATCAGCTCACAAGGGTTACGTTGTATTAGAGGTTGTTCTAATACAGGTGGTGTTATATCACATTTCTTACAATAGCCGAGAAAATGCAATTTTCTCAATCTAGGTTTATTTTACACGCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTCGGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAGACTTGCCAAGATGGTTCTTCGACCGCAAACAAAACCGGTGCGCTCCATTCACCTACGGAGGAGTTGCAGGAAACGAGAACAACTTCATTAGCCAAAACACTTGTATGGAGGCGTGTCCAGAGTATAGAAACTATTGTCCACATGGAATTCCACTGATCGAAGGCTCCACAGTAACCTCCTGCGGAATTGATAAGGGATGTCCAGAAGGATTCATCTGTCATATGTCCTCAGAATTCAACGTCTCCATTTGCTGTCAGGTATGGAATAATTGCCGAAATCTGACACAAATTAAGTGTATAAATTTTAGGATCCAATGGATTTCTGCCTTTCGGCTCGCGACTCGGGACCATGCAATAACTTTGAAAAGCGATATGGTTATGACGCGAATACCGATACCTGTGTTGA</canonical>
            <polymorphic>TTTGTTGGGTGTAAAACATTCCAGTTTGAAAATTCTGCATTCATATAACCTTTCGAGAAATCCTAGGTTTTGGTGTTTTTTCAGAAACCGGCAAACACAGTTAAATCTGCAATATAGCGCCGTAGACTTTCTATTTTTCTGATTGGTGTTTTGAGAAGATGCGAGGTAGGAAAAGTGTGTTTTCAACTTGATCAACAGAGTACCAAAGTAAAAAAATGGTGCGAAATTTTTATATTTCACTGCTACTCTGTAATCAAATAAAAAAAACTTCACTTTGCTCTCTGCAATCAGCTCACAAGGGTTACGTTGTATTAGAGGTTGTTCTAATACAGGTGGTGTTATATCACATTTCTTACAATAGCCGAGAAAATGCAATTTTCTCAATCTAGGTTTATTTTACACGCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTCGGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTKACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAGACTTGCCAAGATGGTTCTTCGACCGCAAACAAAACCGGTGCGCTCCATTCACCTACGGAGGAGTTGCAGGAAACGAGAACAACTTCATTAGCCAAAACACTTGTATGGAGGCGTGTCCAGAGTATAGAAACTATTGTCCACATGGAATTCCACTGATCGAAGGCTCCACAGTAACCTCCTGCGGAATTGATAAGGGATGTCCAGAAGGATTCATCTGTCATATGTCCTCAGAATTCAACGTCTCCATTTGCTGTCAGGTATGGAATAATTGCCGAAATCTGACACAAATTAAGTGTATAAATTTTAGGATCCAATGGATTTCTGCCTTTCGGCTCGCGACTCGGGACCATGCAATAACTTTGAAAAGCGATATGGTTATGACGCGAATACCGATACCTGTGTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAAGAGAAGTGAGGAAGTTA</pcr_primer_p1>
		<pcr_primer_p2>CTTCAGAACCAGTTCCCTCT</pcr_primer_p2>
		<pcr_amplicon_size>736</pcr_amplicon_size>
		<canonical_amplicon>TTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAG</canonical_amplicon>
		<polymorphic_amplicon>TKACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11494</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>313738</contig_pos>
        <strand>+</strand>
        <context>cCAACATATT[A/T]GCCCGGAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATT</left_flank>
        <right_flank>GCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACATTCCAGTTTGAAAATTCTGCATTCATATAACCTTTCGAGAAATCCTAGGTTTTGGTGTTTTTTCAGAAACCGGCAAACACAGTTAAATCTGCAATATAGCGCCGTAGACTTTCTATTTTTCTGATTGGTGTTTTGAGAAGATGCGAGGTAGGAAAAGTGTGTTTTCAACTTGATCAACAGAGTACCAAAGTAAAAAAATGGTGCGAAATTTTTATATTTCACTGCTACTCTGTAATCAAATAAAAAAAACTTCACTTTGCTCTCTGCAATCAGCTCACAAGGGTTACGTTGTATTAGAGGTTGTTCTAATACAGGTGGTGTTATATCACATTTCTTACAATAGCCGAGAAAATGCAATTTTCTCAATCTAGGTTTATTTTACACGCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTCGGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAGACTTGCCAAGATGGTTCTTCGACCGCAAACAAAACCGGTGCGCTCCATTCACCTACGGAGGAGTTGCAGGAAACGAGAACAACTTCATTAGCCAAAACACTTGTATGGAGGCGTGTCCAGAGTATAGAAACTATTGTCCACATGGAATTCCACTGATCGAAGGCTCCACAGTAACCTCCTGCGGAATTGATAAGGGATGTCCAGAAGGATTCATCTGTCATATGTCCTCAGAATTCAACGTCTCCATTTGCTGTCAGGTATGGAATAATTGCCGAAATCTGACACAAATTAAGTGTATAAATTTTAGGATCCAATGGATTTCTGCCTTTCGGCTCGCGACTCGGGACCATGCAATAACTTTGAAAAGCGATATGGTTATGACGCGAATACCGATACCTGTGTTGAGTACCAATATGG</canonical>
            <polymorphic>AAAACATTCCAGTTTGAAAATTCTGCATTCATATAACCTTTCGAGAAATCCTAGGTTTTGGTGTTTTTTCAGAAACCGGCAAACACAGTTAAATCTGCAATATAGCGCCGTAGACTTTCTATTTTTCTGATTGGTGTTTTGAGAAGATGCGAGGTAGGAAAAGTGTGTTTTCAACTTGATCAACAGAGTACCAAAGTAAAAAAATGGTGCGAAATTTTTATATTTCACTGCTACTCTGTAATCAAATAAAAAAAACTTCACTTTGCTCTCTGCAATCAGCTCACAAGGGTTACGTTGTATTAGAGGTTGTTCTAATACAGGTGGTGTTATATCACATTTCTTACAATAGCCGAGAAAATGCAATTTTCTCAATCTAGGTTTATTTTACACGCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTCGGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTWGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAGACTTGCCAAGATGGTTCTTCGACCGCAAACAAAACCGGTGCGCTCCATTCACCTACGGAGGAGTTGCAGGAAACGAGAACAACTTCATTAGCCAAAACACTTGTATGGAGGCGTGTCCAGAGTATAGAAACTATTGTCCACATGGAATTCCACTGATCGAAGGCTCCACAGTAACCTCCTGCGGAATTGATAAGGGATGTCCAGAAGGATTCATCTGTCATATGTCCTCAGAATTCAACGTCTCCATTTGCTGTCAGGTATGGAATAATTGCCGAAATCTGACACAAATTAAGTGTATAAATTTTAGGATCCAATGGATTTCTGCCTTTCGGCTCGCGACTCGGGACCATGCAATAACTTTGAAAAGCGATATGGTTATGACGCGAATACCGATACCTGTGTTGAGTACCAATATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>279 173 169 85 82 72 70 63 7</canonical_bands>
                <polymorphic_bands>279 236 169 85 82 72 70 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAAGAGAAGTGAGGAAGTTA</pcr_primer_p1>
		<pcr_primer_p2>CTTCAGAACCAGTTCCCTCT</pcr_primer_p2>
		<pcr_amplicon_size>736</pcr_amplicon_size>
		<canonical_amplicon>TAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAG</canonical_amplicon>
		<polymorphic_amplicon>TWGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11495</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>313904</contig_pos>
        <strand>+</strand>
        <context>ACGAGAACAA[C/T]TTCATTAGCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACCGGTGCGCTCCATTCACCTACGGAGGAGTTGCAGGAAACGAGAACAA</left_flank>
        <right_flank>TTCATTAGCCAAAACACTTGTATGGAGGCGTGTCCAGAGTATAGAAACTA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTCAACTTGATCAACAGAGTACCAAAGTAAAAAAATGGTGCGAAATTTTTATATTTCACTGCTACTCTGTAATCAAATAAAAAAAACTTCACTTTGCTCTCTGCAATCAGCTCACAAGGGTTACGTTGTATTAGAGGTTGTTCTAATACAGGTGGTGTTATATCACATTTCTTACAATAGCCGAGAAAATGCAATTTTCTCAATCTAGGTTTATTTTACACGCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTCGGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAGACTTGCCAAGATGGTTCTTCGACCGCAAACAAAACCGGTGCGCTCCATTCACCTACGGAGGAGTTGCAGGAAACGAGAACAACTTCATTAGCCAAAACACTTGTATGGAGGCGTGTCCAGAGTATAGAAACTATTGTCCACATGGAATTCCACTGATCGAAGGCTCCACAGTAACCTCCTGCGGAATTGATAAGGGATGTCCAGAAGGATTCATCTGTCATATGTCCTCAGAATTCAACGTCTCCATTTGCTGTCAGGTATGGAATAATTGCCGAAATCTGACACAAATTAAGTGTATAAATTTTAGGATCCAATGGATTTCTGCCTTTCGGCTCGCGACTCGGGACCATGCAATAACTTTGAAAAGCGATATGGTTATGACGCGAATACCGATACCTGTGTTGAGTACCAATATGGTGGATGTGAAGGAACACTGAATAACTTCCACTCGCTCCAAAGATGTACAGAGATTTGCTGCAAGGAGTACAAGAGAAGACATCGATTGTAAAATTCTAATTTCTAATTTTTTTCAAAAACTTTCACGATACCGGTAGCCCCTCTGTTCATTTTTTTTTTCTTCCTG</canonical>
            <polymorphic>GTTTTCAACTTGATCAACAGAGTACCAAAGTAAAAAAATGGTGCGAAATTTTTATATTTCACTGCTACTCTGTAATCAAATAAAAAAAACTTCACTTTGCTCTCTGCAATCAGCTCACAAGGGTTACGTTGTATTAGAGGTTGTTCTAATACAGGTGGTGTTATATCACATTTCTTACAATAGCCGAGAAAATGCAATTTTCTCAATCTAGGTTTATTTTACACGCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTCGGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAGACTTGCCAAGATGGTTCTTCGACCGCAAACAAAACCGGTGCGCTCCATTCACCTACGGAGGAGTTGCAGGAAACGAGAACAAYTTCATTAGCCAAAACACTTGTATGGAGGCGTGTCCAGAGTATAGAAACTATTGTCCACATGGAATTCCACTGATCGAAGGCTCCACAGTAACCTCCTGCGGAATTGATAAGGGATGTCCAGAAGGATTCATCTGTCATATGTCCTCAGAATTCAACGTCTCCATTTGCTGTCAGGTATGGAATAATTGCCGAAATCTGACACAAATTAAGTGTATAAATTTTAGGATCCAATGGATTTCTGCCTTTCGGCTCGCGACTCGGGACCATGCAATAACTTTGAAAAGCGATATGGTTATGACGCGAATACCGATACCTGTGTTGAGTACCAATATGGTGGATGTGAAGGAACACTGAATAACTTCCACTCGCTCCAAAGATGTACAGAGATTTGCTGCAAGGAGTACAAGAGAAGACATCGATTGTAAAATTCTAATTTCTAATTTTTTTCAAAAACTTTCACGATACCGGTAGCCCCTCTGTTCATTTTTTTTTTCTTCCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGGAACTGGTTCTGAAGAC</pcr_primer_p1>
		<pcr_primer_p2>CTGAGGACATATGACAGATGAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGGGAACTGGTTCTGAAGACTTGCCAAGATGGTTCTTCGACCGCAAACAAAACCGGTGCGCTCCATTCACCTACGGAGGAGTTGCAGGAAACGAGAACAACTTCATTAGCCAAAACACTTGTATGGAGGCGTGTCCAGAGTATAGAAACTATTGTCCACATGGAATTCCACTGATCGAAGGCTCCACAGTAACCTCCTGCGGAATTGATAAGGGATGTCCAGAAGGATTCATCTGTCATATGTCCTCAG</canonical_amplicon>
		<polymorphic_amplicon>AGGGAACTGGTTCTGAAGACTTGCCAAGATGGTTCTTCGACCGCAAACAAAACCGGTGCGCTCCATTCACCTACGGAGGAGTTGCAGGAAACGAGAACAAYTTCATTAGCCAAAACACTTGTATGGAGGCGTGTCCAGAGTATAGAAACTATTGTCCACATGGAATTCCACTGATCGAAGGCTCCACAGTAACCTCCTGCGGAATTGATAAGGGATGTCCAGAAGGATTCATCTGTCATATGTCCTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11496</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>314099</contig_pos>
        <strand>+</strand>
        <context>ATTGCCGAAA[A/T]CTGACACAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAGAATTCAACGTCTCCATTTGCTGTCAGGTATGGAATAATTGCCGAAA</left_flank>
        <right_flank>CTGACACAAATTAAGTGTATAAATTTTAGGATCCAATGGATTTCTGCCTT</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTCTCAATCTAGGTTTATTTTACACGCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTCGGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAGACTTGCCAAGATGGTTCTTCGACCGCAAACAAAACCGGTGCGCTCCATTCACCTACGGAGGAGTTGCAGGAAACGAGAACAACTTCATTAGCCAAAACACTTGTATGGAGGCGTGTCCAGAGTATAGAAACTATTGTCCACATGGAATTCCACTGATCGAAGGCTCCACAGTAACCTCCTGCGGAATTGATAAGGGATGTCCAGAAGGATTCATCTGTCATATGTCCTCAGAATTCAACGTCTCCATTTGCTGTCAGGTATGGAATAATTGCCGAAATCTGACACAAATTAAGTGTATAAATTTTAGGATCCAATGGATTTCTGCCTTTCGGCTCGCGACTCGGGACCATGCAATAACTTTGAAAAGCGATATGGTTATGACGCGAATACCGATACCTGTGTTGAGTACCAATATGGTGGATGTGAAGGAACACTGAATAACTTCCACTCGCTCCAAAGATGTACAGAGATTTGCTGCAAGGAGTACAAGAGAAGACATCGATTGTAAAATTCTAATTTCTAATTTTTTTCAAAAACTTTCACGATACCGGTAGCCCCTCTGTTCATTTTTTTTTTCTTCCTGACATTAAAAAACCAAAAAAATTCGAAGATTGTTTTAATTGAGTTCTATTAACGGATCTCTCCTCCATTTTCTCTCATTGCGTCTAATTTTCTGTGGATGATTATAATCAGATTATCACCTTCTCTCTTCAACCCCTTGATTCTTTGGTTTAACCAGCGTTACTCAGCTCTGTTTGCTCAGTGTCTGCCCCCGTTC</canonical>
            <polymorphic>AATTTTCTCAATCTAGGTTTATTTTACACGCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTCGGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAGACTTGCCAAGATGGTTCTTCGACCGCAAACAAAACCGGTGCGCTCCATTCACCTACGGAGGAGTTGCAGGAAACGAGAACAACTTCATTAGCCAAAACACTTGTATGGAGGCGTGTCCAGAGTATAGAAACTATTGTCCACATGGAATTCCACTGATCGAAGGCTCCACAGTAACCTCCTGCGGAATTGATAAGGGATGTCCAGAAGGATTCATCTGTCATATGTCCTCAGAATTCAACGTCTCCATTTGCTGTCAGGTATGGAATAATTGCCGAAAWCTGACACAAATTAAGTGTATAAATTTTAGGATCCAATGGATTTCTGCCTTTCGGCTCGCGACTCGGGACCATGCAATAACTTTGAAAAGCGATATGGTTATGACGCGAATACCGATACCTGTGTTGAGTACCAATATGGTGGATGTGAAGGAACACTGAATAACTTCCACTCGCTCCAAAGATGTACAGAGATTTGCTGCAAGGAGTACAAGAGAAGACATCGATTGTAAAATTCTAATTTCTAATTTTTTTCAAAAACTTTCACGATACCGGTAGCCCCTCTGTTCATTTTTTTTTTCTTCCTGACATTAAAAAACCAAAAAAATTCGAAGATTGTTTTAATTGAGTTCTATTAACGGATCTCTCCTCCATTTTCTCTCATTGCGTCTAATTTTCTGTGGATGATTATAATCAGATTATCACCTTCTCTCTTCAACCCCTTGATTCTTTGGTTTAACCAGCGTTACTCAGCTCTGTTTGCTCAGTGTCTGCCCCCGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>412 234 218 86 50</canonical_bands>
                <polymorphic_bands>462 234 218 86</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCATCTGTCATATGTCCTCAG</pcr_primer_p1>
		<pcr_primer_p2>AAGTTATTCAGTGTTCCTTCACA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>ATTCATCTGTCATATGTCCTCAGAATTCAACGTCTCCATTTGCTGTCAGGTATGGAATAATTGCCGAAATCTGACACAAATTAAGTGTATAAATTTTAGGATCCAATGGATTTCTGCCTTTCGGCTCGCGACTCGGGACCATGCAATAACTTTGAAAAGCGATATGGTTATGACGCGAATACCGATACCTGTGTTGAGTACCAATATGGTGGATGTGAAGGAACACTGAATAACTT</canonical_amplicon>
		<polymorphic_amplicon>ATTCATCTGTCATATGTCCTCAGAATTCAACGTCTCCATTTGCTGTCAGGTATGGAATAATTGCCGAAAWCTGACACAAATTAAGTGTATAAATTTTAGGATCCAATGGATTTCTGCCTTTCGGCTCGCGACTCGGGACCATGCAATAACTTTGAAAAGCGATATGGTTATGACGCGAATACCGATACCTGTGTTGAGTACCAATATGGTGGATGTGAAGGAACACTGAATAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11497</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>315482</contig_pos>
        <strand></strand>
        <context>GTAYTTTTTT[C/T]CGTTTTTTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACACATTTCGCTGTGATTTCTGTCTGGATTTTTAGTCTACGTATTTTTTT</left_flank>
        <right_flank>CGTTTTTTGTTCTAGTGAAATTTCAATAGTACTCAGGTTTCTGTACTAAG</right_flank>
        <qual_score>49</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCCTTTTCCTAGTTTTTTTTCTAGCACTTTCTCCTAGAGTAATTAACCCTTCCATTAGAAATCTTTCCTTCACCACCACCCTACCGAAAAGAAAAAAAACGTTCTCGATAATTGCCGTGAAGTTTGGCCAATCGATGAGTCATTTCACTACCTCCCTCATTTTCTTCTTACTCCCCATCAAATACTAAGCAACAAAACAAATGGACAGGTAGAGCGCCCTCCTATTGATCGCTCATTGTTCTTTATTTTCGAAAAATGTTTGAGAAATGTTCTTTTTTCTCAGCAAAAAGTCATTCTCATGCATTTTTCTCATCCCACACAACGTCATATTGTTTATAAAATTGAGTGGGAGAGTTTAGTGCACTATGATAATATACACATGCCTTCGCTTCTCATAACAAATGGAGAACCAGACTGTACCAGCTTGCAGATCAGGCTCTCTGCATAAACACATTTCGCTGTGATTTCTGTCTGGATTTTTAGTCTACGTATTTTTTTCCGTTTTTTGTTCTAGTGAAATTTCAATAGTACTCAGGTTTCTGTACTAAGTGAGCCAGTTTTGTTGGAATTTTAAGCTAAAAACGATGAATTGCATATAACTTATTACTGATTAGCTTCCCATTTAATGCAAAACTTATTTTGAAACTATATTGAAGTTTCTGAGAAGCACTCAGTTAAAAAAACGAAATTTAATTTAATTTAACCCTCACATTTTCAATGTTCTTGAAAATTTTAAAAGCTGAAAATTTTTCAACAAACTAAGGTATTTCCTCTAGAAGAAGACCGTCCGATTTGAGGCAAACTTGAGTTCAATTATCTCGATTCCTGAAAAAGATAGCAAAAATTTGTCAATTAAAAATTTAAGCTTCTTGAAGGCGTCCAAAAGTCTTCCTGTTCCGATGTTACAAGAAGTTCAACTATCCCTATATATCCTACTTTGATTGTCTCCGTGATCACAATTTAGAATCCTTAGAGTACCGTCCACTTCTATCCAATCTA</canonical>
            <polymorphic>GCCCTTTTCCTAGTTTTTTTTCTAGCACTTTCTCCTAGAGTAATTAACCCTTCCATTAGAAATCTTTCCTTCACCACCACCCTACCGAAAAGAAAAAAAACGTTCTCGATAATTGCCGTGAAGTTTGGCCAATCGATGAGTCATTTCACTACCTCCCTCATTTTCTTCTTACTCCCCATCAAATACTAAGCAACAAAACAAATGGACAGGTAGAGCGCCCTCCTATTGATCGCTCATTGTTCTTTATTTTCGAAAAATGTTTGAGAAATGTTCTTTTTTCTCAGCAAAAAGTCATTCTCATGCATTTTTCTCATCCCACACAACGTCATATTGTTTATAAAATTGAGTGGGAGAGTTTAGTGCACTATGATAATATACACATGCCTTCGCTTCTCATAACAAATGGAGAACCAGACTGTACCAGCTTGCAGATCAGGCTCTCTGCATAAACACATTTCGCTGTGATTTCTGTCTGGATTTTTAGTCTACGTATTTTTTTYCGTTTTTTGTTCTAGTGAAATTTCAATAGTACTCAGGTTTCTGTACTAAGTGAGCCAGTTTTGTTGGAATTTTAAGCTAAAAACGATGAATTGCATATAACTTATTACTGATTAGCTTCCCATTTAATGCAAAACTTATTTTGAAACTATATTGAAGTTTCTGAGAAGCACTCAGTTAAAAAAACGAAATTTAATTTAATTTAACCCTCACATTTTCAATGTTCTTGAAAATTTTAAAAGCTGAAAATTTTTCAACAAACTAAGGTATTTCCTCTAGAAGAAGACCGTCCGATTTGAGGCAAACTTGAGTTCAATTATCTCGATTCCTGAAAAAGATAGCAAAAATTTGTCAATTAAAAATTTAAGCTTCTTGAAGGCGTCCAAAAGTCTTCCTGTTCCGATGTTACAAGAAGTTCAACTATCCCTATATATCCTACTTTGATTGTCTCCGTGATCACAATTTAGAATCCTTAGAGTACCGTCCACTTCTATCCAATCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTATAAAATTGAGTGGGAGA</pcr_primer_p1>
		<pcr_primer_p2>TTAGCTTAAAATTCCAACAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTTTATAAAATTGAGTGGGAGAGTTTAGTGCACTATGATAATATACACATGCCTTCGCTTCTCATAACAAATGGAGAACCAGACTGTACCAGCTTGCAGATCAGGCTCTCTGCATAAACACATTTCGCTGTGATTTCTGTCTGGATTTTTAGTCTACGTATTTTTTTCCGTTTTTTGTTCTAGTGAAATTTCAATAGTACTCAGGTTTCTGTACTAAGTGAGCCAGTTTTGTTGGAATTTTAAGCTAA</canonical_amplicon>
		<polymorphic_amplicon>TGTTTATAAAATTGAGTGGGAGAGTTTAGTGCACTATGATAATATACACATGCCTTCGCTTCTCATAACAAATGGAGAACCAGACTGTACCAGCTTGCAGATCAGGCTCTCTGCATAAACACATTTCGCTGTGATTTCTGTCTGGATTTTTAGTCTACGTATTTTTTTYCGTTTTTTGTTCTAGTGAAATTTCAATAGTACTCAGGTTTCTGTACTAAGTGAGCCAGTTTTGTTGGAATTTTAAGCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11499</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>315341</contig_pos>
        <strand>+</strand>
        <context>GGGAGAGTTT[A/G]GTGCACTATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTCATCCCACACAACGTCATATTGTTTATAAAATTGAGTGGGAGAGTTT</left_flank>
        <right_flank>GTGCACTATGATAATATACACATGCCTTCGCTTCTCATAACAAATGGAGA</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTCCAGTTTTTTGATCTTCTTTTTTTTTCAGGACGGGAATAGAAATTGCATATCAGTTTTCGCTTTCTTTCTTCAATTTCGATTTCTCATCTTCTTGGTTTTCCCCGATTTTTTCCTTCATCTCAAATTACCTAGAGATGCCCTTTTCCTAGTTTTTTTTCTAGCACTTTCTCCTAGAGTAATTAACCCTTCCATTAGAAATCTTTCCTTCACCACCACCCTACCGAAAAGAAAAAAAACGTTCTCGATAATTGCCGTGAAGTTTGGCCAATCGATGAGTCATTTCACTACCTCCCTCATTTTCTTCTTACTCCCCATCAAATACTAAGCAACAAAACAAATGGACAGGTAGAGCGCCCTCCTATTGATCGCTCATTGTTCTTTATTTTCGAAAAATGTTTGAGAAATGTTCTTTTTTCTCAGCAAAAAGTCATTCTCATGCATTTTTCTCATCCCACACAACGTCATATTGTTTATAAAATTGAGTGGGAGAGTTTAGTGCACTATGATAATATACACATGCCTTCGCTTCTCATAACAAATGGAGAACCAGACTGTACCAGCTTGCAGATCAGGCTCTCTGCATAAACACATTTCGCTGTGATTTCTGTCTGGATTTTTAGTCTACGTATTTTTTTCCGTTTTTTGTTCTAGTGAAATTTCAATAGTACTCAGGTTTCTGTACTAAGTGAGCCAGTTTTGTTGGAATTTTAAGCTAAAAACGATGAATTGCATATAACTTATTACTGATTAGCTTCCCATTTAATGCAAAACTTATTTTGAAACTATATTGAAGTTTCTGAGAAGCACTCAGTTAAAAAAACGAAATTTAATTTAATTTAACCCTCACATTTTCAATGTTCTTGAAAATTTTAAAAGCTGAAAATTTTTCAACAAACTAAGGTATTTCCTCTAGAAGAAGACCGTCCGATTTGAGGCAAACTTGAGTTCAATTATCTCGATTCCTGAAAAAGATAGCAAAAATTTGTCAATTAAAA</canonical>
            <polymorphic>TCCTCCAGTTTTTTGATCTTCTTTTTTTTTCAGGACGGGAATAGAAATTGCATATCAGTTTTCGCTTTCTTTCTTCAATTTCGATTTCTCATCTTCTTGGTTTTCCCCGATTTTTTCCTTCATCTCAAATTACCTAGAGATGCCCTTTTCCTAGTTTTTTTTCTAGCACTTTCTCCTAGAGTAATTAACCCTTCCATTAGAAATCTTTCCTTCACCACCACCCTACCGAAAAGAAAAAAAACGTTCTCGATAATTGCCGTGAAGTTTGGCCAATCGATGAGTCATTTCACTACCTCCCTCATTTTCTTCTTACTCCCCATCAAATACTAAGCAACAAAACAAATGGACAGGTAGAGCGCCCTCCTATTGATCGCTCATTGTTCTTTATTTTCGAAAAATGTTTGAGAAATGTTCTTTTTTCTCAGCAAAAAGTCATTCTCATGCATTTTTCTCATCCCACACAACGTCATATTGTTTATAAAATTGAGTGGGAGAGTTTRGTGCACTATGATAATATACACATGCCTTCGCTTCTCATAACAAATGGAGAACCAGACTGTACCAGCTTGCAGATCAGGCTCTCTGCATAAACACATTTCGCTGTGATTTCTGTCTGGATTTTTAGTCTACGTATTTTTTTCCGTTTTTTGTTCTAGTGAAATTTCAATAGTACTCAGGTTTCTGTACTAAGTGAGCCAGTTTTGTTGGAATTTTAAGCTAAAAACGATGAATTGCATATAACTTATTACTGATTAGCTTCCCATTTAATGCAAAACTTATTTTGAAACTATATTGAAGTTTCTGAGAAGCACTCAGTTAAAAAAACGAAATTTAATTTAATTTAACCCTCACATTTTCAATGTTCTTGAAAATTTTAAAAGCTGAAAATTTTTCAACAAACTAAGGTATTTCCTCTAGAAGAAGACCGTCCGATTTGAGGCAAACTTGAGTTCAATTATCTCGATTCCTGAAAAAGATAGCAAAAATTTGTCAATTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTACTCCCCATCAAATACTAA</pcr_primer_p1>
		<pcr_primer_p2>GTCTGGTTCTCCATTTGTTATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTACTCCCCATCAAATACTAAGCAACAAAACAAATGGACAGGTAGAGCGCCCTCCTATTGATCGCTCATTGTTCTTTATTTTCGAAAAATGTTTGAGAAATGTTCTTTTTTCTCAGCAAAAAGTCATTCTCATGCATTTTTCTCATCCCACACAACGTCATATTGTTTATAAAATTGAGTGGGAGAGTTTAGTGCACTATGATAATATACACATGCCTTCGCTTCTCATAACAAATGGAGAACCAGAC</canonical_amplicon>
		<polymorphic_amplicon>TCTTACTCCCCATCAAATACTAAGCAACAAAACAAATGGACAGGTAGAGCGCCCTCCTATTGATCGCTCATTGTTCTTTATTTTCGAAAAATGTTTGAGAAATGTTCTTTTTTCTCAGCAAAAAGTCATTCTCATGCATTTTTCTCATCCCACACAACGTCATATTGTTTATAAAATTGAGTGGGAGAGTTTRGTGCACTATGATAATATACACATGCCTTCGCTTCTCATAACAAATGGAGAACCAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11500</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>315778</contig_pos>
        <strand>+</strand>
        <context>CGTCCGATTT[A/G]AGGCAAACtt</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTTTCAACAAACTAAGGTATTTCCTCTAGAAGAAGACCGTCCGATTT</left_flank>
        <right_flank>AGGCAAACTTGAGTTCAATTATCTCGATTCCTGAAAAAGATAGCAAAAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCATGCATTTTTCTCATCCCACACAACGTCATATTGTTTATAAAATTGAGTGGGAGAGTTTAGTGCACTATGATAATATACACATGCCTTCGCTTCTCATAACAAATGGAGAACCAGACTGTACCAGCTTGCAGATCAGGCTCTCTGCATAAACACATTTCGCTGTGATTTCTGTCTGGATTTTTAGTCTACGTATTTTTTTCCGTTTTTTGTTCTAGTGAAATTTCAATAGTACTCAGGTTTCTGTACTAAGTGAGCCAGTTTTGTTGGAATTTTAAGCTAAAAACGATGAATTGCATATAACTTATTACTGATTAGCTTCCCATTTAATGCAAAACTTATTTTGAAACTATATTGAAGTTTCTGAGAAGCACTCAGTTAAAAAAACGAAATTTAATTTAATTTAACCCTCACATTTTCAATGTTCTTGAAAATTTTAAAAGCTGAAAATTTTTCAACAAACTAAGGTATTTCCTCTAGAAGAAGACCGTCCGATTTGAGGCAAACTTGAGTTCAATTATCTCGATTCCTGAAAAAGATAGCAAAAATTTGTCAATTAAAAATTTAAGCTTCTTGAAGGCGTCCAAAAGTCTTCCTGTTCCGATGTTACAAGAAGTTCAACTATCCCTATATATCCTACTTTGATTGTCTCCGTGATCACAATTTAGAATCCTTAGAGTACCGTCCACTTCTATCCAATCTAGTTTTTATGTATAAAACTCTAGTTTCCCGGGAAATTTCAATTGCCCATAATCTATTCATTGTCCCGTTTCATCATAATCATCTAAGACGCCACCCATATTACATTCGCTGTACATTAAAAAATGCTTCAAAACTTTCTGCTCAATTTCTTACTCTCCGTATTATATCCTGCTGGAACTCGCTTCCGAAAACCGTGTTCCTACCCTTGATTTCATCCATCTCTTTTAAAACTAATTAAAGTCATGTTAATTTATCTTCTTTCCTGTTCCTAGACGAACATAATTTCTAACTCATTTG</canonical>
            <polymorphic>CTCATGCATTTTTCTCATCCCACACAACGTCATATTGTTTATAAAATTGAGTGGGAGAGTTTAGTGCACTATGATAATATACACATGCCTTCGCTTCTCATAACAAATGGAGAACCAGACTGTACCAGCTTGCAGATCAGGCTCTCTGCATAAACACATTTCGCTGTGATTTCTGTCTGGATTTTTAGTCTACGTATTTTTTTCCGTTTTTTGTTCTAGTGAAATTTCAATAGTACTCAGGTTTCTGTACTAAGTGAGCCAGTTTTGTTGGAATTTTAAGCTAAAAACGATGAATTGCATATAACTTATTACTGATTAGCTTCCCATTTAATGCAAAACTTATTTTGAAACTATATTGAAGTTTCTGAGAAGCACTCAGTTAAAAAAACGAAATTTAATTTAATTTAACCCTCACATTTTCAATGTTCTTGAAAATTTTAAAAGCTGAAAATTTTTCAACAAACTAAGGTATTTCCTCTAGAAGAAGACCGTCCGATTTRAGGCAAACTTGAGTTCAATTATCTCGATTCCTGAAAAAGATAGCAAAAATTTGTCAATTAAAAATTTAAGCTTCTTGAAGGCGTCCAAAAGTCTTCCTGTTCCGATGTTACAAGAAGTTCAACTATCCCTATATATCCTACTTTGATTGTCTCCGTGATCACAATTTAGAATCCTTAGAGTACCGTCCACTTCTATCCAATCTAGTTTTTATGTATAAAACTCTAGTTTCCCGGGAAATTTCAATTGCCCATAATCTATTCATTGTCCCGTTTCATCATAATCATCTAAGACGCCACCCATATTACATTCGCTGTACATTAAAAAATGCTTCAAAACTTTCTGCTCAATTTCTTACTCTCCGTATTATATCCTGCTGGAACTCGCTTCCGAAAACCGTGTTCCTACCCTTGATTTCATCCATCTCTTTTAAAACTAATTAAAGTCATGTTAATTTATCTTCTTTCCTGTTCCTAGACGAACATAATTTCTAACTCATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTGAGAAGCACTCAGTTAAA</pcr_primer_p1>
		<pcr_primer_p2>GTAACATCGGAACAGGAAGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCTGAGAAGCACTCAGTTAAAAAAACGAAATTTAATTTAATTTAACCCTCACATTTTCAATGTTCTTGAAAATTTTAAAAGCTGAAAATTTTTCAACAAACTAAGGTATTTCCTCTAGAAGAAGACCGTCCGATTTGAGGCAAACTTGAGTTCAATTATCTCGATTCCTGAAAAAGATAGCAAAAATTTGTCAATTAAAAATTTAAGCTTCTTGAAGGCGTCCAAAAGTCTTCCTGTTCCGATGTTAC</canonical_amplicon>
		<polymorphic_amplicon>TTTCTGAGAAGCACTCAGTTAAAAAAACGAAATTTAATTTAATTTAACCCTCACATTTTCAATGTTCTTGAAAATTTTAAAAGCTGAAAATTTTTCAACAAACTAAGGTATTTCCTCTAGAAGAAGACCGTCCGATTTRAGGCAAACTTGAGTTCAATTATCTCGATTCCTGAAAAAGATAGCAAAAATTTGTCAATTAAAAATTTAAGCTTCTTGAAGGCGTCCAAAAGTCTTCCTGTTCCGATGTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11505</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>321292</contig_pos>
        <strand>+</strand>
        <context>AGTTTCCATA[A/G]CTTGTAGATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTTCAAAATTCTATATCAACTTCTTCACTTACCGATTCAGTTTCCATA</left_flank>
        <right_flank>CTTGTAGATCATGAAAATTGCCACTAGGATGTACGCTGCATCGAATATTA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGGAGCCCACAGGTACAACTCAAAAAGTTCTAAACTGGCAAAGTGTTTTTGATATTCTGATAAATGCTTTATCAGTTGATTCCTCTTTTATCTTTTACAAAAACCGAGATAATTAGGATCATAGTTTACGGTTGATATGATATCTTCTTGGATTTCAATGTAACTGAAATTTGCTACTGTTTCTTGACATTCTTGAATCCTCAAATTTTCGCTTCTCTGTTCCTTTCTCGTTTTCCCACTTTATAAGATCAGGGGGTTTACCAATAATTTTTTATTATTAACTCAACTTACTCAATTTTGAAACGTTGGCTAACTCACTTTGATAAACGCGTACACCCACATAATCATGCAGTCACTGACAAATAGACTTTTCTTGAATAATAGAAATGATTTGTTGGTCCCCGATTGACCACTAGGTGTCATTGGTTGCTTGACTCTGGAAAATGTTTTCTTCAAAATTCTATATCAACTTCTTCACTTACCGATTCAGTTTCCATAGCTTGTAGATCATGAAAATTGCCACTAGGATGTACGCTGCATCGAATATTAGTAAAATTAAAGCCTCAGTTAGCTCTGACCACAGTCGGTCCGGGATTACTGTAGACATCCGAGTGGATGTCTCCAGCATCTGAAAAAAACTAAGAATAGGAATAAAGAGAATTACGAAGTCAAATCATGGGCGGAAAACTGAGAAAACACCGGGCATTGAGAATTCAAAGATTCAGGGGTAGTTATTCTTAGCTCCAAGAACGAACCACGATTCCTGTGCCCCTCTTTGTTGTTGTCTTTAAGAAAAACAACTCGGAAGACGTCGGACTTTGTCATTCTCGAACTCCCCCTCAATTTCCTTTTCAACAAAATTCAGCTGCAATTCCCCTGTCTCACTTTGTGTTGATTTTTCCCTTCGCCCTTGGAACGGCGAAAATCACAAACAACGTCCAGAGAAAACTTGTTTGTATGCACTAACTAGGTAAATTTATGTATGGTAGGAGAGGGCTG</canonical>
            <polymorphic>GGGGAGCCCACAGGTACAACTCAAAAAGTTCTAAACTGGCAAAGTGTTTTTGATATTCTGATAAATGCTTTATCAGTTGATTCCTCTTTTATCTTTTACAAAAACCGAGATAATTAGGATCATAGTTTACGGTTGATATGATATCTTCTTGGATTTCAATGTAACTGAAATTTGCTACTGTTTCTTGACATTCTTGAATCCTCAAATTTTCGCTTCTCTGTTCCTTTCTCGTTTTCCCACTTTATAAGATCAGGGGGTTTACCAATAATTTTTTATTATTAACTCAACTTACTCAATTTTGAAACGTTGGCTAACTCACTTTGATAAACGCGTACACCCACATAATCATGCAGTCACTGACAAATAGACTTTTCTTGAATAATAGAAATGATTTGTTGGTCCCCGATTGACCACTAGGTGTCATTGGTTGCTTGACTCTGGAAAATGTTTTCTTCAAAATTCTATATCAACTTCTTCACTTACCGATTCAGTTTCCATARCTTGTAGATCATGAAAATTGCCACTAGGATGTACGCTGCATCGAATATTAGTAAAATTAAAGCCTCAGTTAGCTCTGACCACAGTCGGTCCGGGATTACTGTAGACATCCGAGTGGATGTCTCCAGCATCTGAAAAAAACTAAGAATAGGAATAAAGAGAATTACGAAGTCAAATCATGGGCGGAAAACTGAGAAAACACCGGGCATTGAGAATTCAAAGATTCAGGGGTAGTTATTCTTAGCTCCAAGAACGAACCACGATTCCTGTGCCCCTCTTTGTTGTTGTCTTTAAGAAAAACAACTCGGAAGACGTCGGACTTTGTCATTCTCGAACTCCCCCTCAATTTCCTTTTCAACAAAATTCAGCTGCAATTCCCCTGTCTCACTTTGTGTTGATTTTTCCCTTCGCCCTTGGAACGGCGAAAATCACAAACAACGTCCAGAGAAAACTTGTTTGTATGCACTAACTAGGTAAATTTATGTATGGTAGGAGAGGGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>500 170 134 124 72</canonical_bands>
                <polymorphic_bands>572 170 134 124</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>304 190 170 131 124 62 10 6 3</canonical_bands>
                <polymorphic_bands>304 252 170 131 124 10 6 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGCAGTCACTGACAAATAGACT</pcr_primer_p1>
		<pcr_primer_p2>AGAGCTAACTGAGGCTTTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>ATGCAGTCACTGACAAATAGACTTTTCTTGAATAATAGAAATGATTTGTTGGTCCCCGATTGACCACTAGGTGTCATTGGTTGCTTGACTCTGGAAAATGTTTTCTTCAAAATTCTATATCAACTTCTTCACTTACCGATTCAGTTTCCATAGCTTGTAGATCATGAAAATTGCCACTAGGATGTACGCTGCATCGAATATTAGTAAAATTAAAGCCTCAGTTAGCTCT</canonical_amplicon>
		<polymorphic_amplicon>ATGCAGTCACTGACAAATAGACTTTTCTTGAATAATAGAAATGATTTGTTGGTCCCCGATTGACCACTAGGTGTCATTGGTTGCTTGACTCTGGAAAATGTTTTCTTCAAAATTCTATATCAACTTCTTCACTTACCGATTCAGTTTCCATARCTTGTAGATCATGAAAATTGCCACTAGGATGTACGCTGCATCGAATATTAGTAAAATTAAAGCCTCAGTTAGCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11506</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>321445</contig_pos>
        <strand>+</strand>
        <context>AGAATAGGAA[A/T]AAAGAGAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGACATCCGAGTGGATGTCTCCAGCATCTGAAAAAAACTAAGAATAGGAA</left_flank>
        <right_flank>AAAGAGAATTACGAAGTCAAATCATGGGCGGAAAACTGAGAAAACACCGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAATGTAACTGAAATTTGCTACTGTTTCTTGACATTCTTGAATCCTCAAATTTTCGCTTCTCTGTTCCTTTCTCGTTTTCCCACTTTATAAGATCAGGGGGTTTACCAATAATTTTTTATTATTAACTCAACTTACTCAATTTTGAAACGTTGGCTAACTCACTTTGATAAACGCGTACACCCACATAATCATGCAGTCACTGACAAATAGACTTTTCTTGAATAATAGAAATGATTTGTTGGTCCCCGATTGACCACTAGGTGTCATTGGTTGCTTGACTCTGGAAAATGTTTTCTTCAAAATTCTATATCAACTTCTTCACTTACCGATTCAGTTTCCATAGCTTGTAGATCATGAAAATTGCCACTAGGATGTACGCTGCATCGAATATTAGTAAAATTAAAGCCTCAGTTAGCTCTGACCACAGTCGGTCCGGGATTACTGTAGACATCCGAGTGGATGTCTCCAGCATCTGAAAAAAACTAAGAATAGGAATAAAGAGAATTACGAAGTCAAATCATGGGCGGAAAACTGAGAAAACACCGGGCATTGAGAATTCAAAGATTCAGGGGTAGTTATTCTTAGCTCCAAGAACGAACCACGATTCCTGTGCCCCTCTTTGTTGTTGTCTTTAAGAAAAACAACTCGGAAGACGTCGGACTTTGTCATTCTCGAACTCCCCCTCAATTTCCTTTTCAACAAAATTCAGCTGCAATTCCCCTGTCTCACTTTGTGTTGATTTTTCCCTTCGCCCTTGGAACGGCGAAAATCACAAACAACGTCCAGAGAAAACTTGTTTGTATGCACTAACTAGGTAAATTTATGTATGGTAGGAGAGGGCTGGCTTGTAGGAAAATGAAAAAGGGAAAAAAGAAAGGAATGGAAAATTAGAAATTGATACGTTCTCAGCATTACGAACATAGCTGGGAGGCAGAACTTTTGATGTTTTGTTGAACACACAGTAGTTAGTACTTGGGAATAACATTAGAATACTTA</canonical>
            <polymorphic>TTTCAATGTAACTGAAATTTGCTACTGTTTCTTGACATTCTTGAATCCTCAAATTTTCGCTTCTCTGTTCCTTTCTCGTTTTCCCACTTTATAAGATCAGGGGGTTTACCAATAATTTTTTATTATTAACTCAACTTACTCAATTTTGAAACGTTGGCTAACTCACTTTGATAAACGCGTACACCCACATAATCATGCAGTCACTGACAAATAGACTTTTCTTGAATAATAGAAATGATTTGTTGGTCCCCGATTGACCACTAGGTGTCATTGGTTGCTTGACTCTGGAAAATGTTTTCTTCAAAATTCTATATCAACTTCTTCACTTACCGATTCAGTTTCCATAGCTTGTAGATCATGAAAATTGCCACTAGGATGTACGCTGCATCGAATATTAGTAAAATTAAAGCCTCAGTTAGCTCTGACCACAGTCGGTCCGGGATTACTGTAGACATCCGAGTGGATGTCTCCAGCATCTGAAAAAAACTAAGAATAGGAAWAAAGAGAATTACGAAGTCAAATCATGGGCGGAAAACTGAGAAAACACCGGGCATTGAGAATTCAAAGATTCAGGGGTAGTTATTCTTAGCTCCAAGAACGAACCACGATTCCTGTGCCCCTCTTTGTTGTTGTCTTTAAGAAAAACAACTCGGAAGACGTCGGACTTTGTCATTCTCGAACTCCCCCTCAATTTCCTTTTCAACAAAATTCAGCTGCAATTCCCCTGTCTCACTTTGTGTTGATTTTTCCCTTCGCCCTTGGAACGGCGAAAATCACAAACAACGTCCAGAGAAAACTTGTTTGTATGCACTAACTAGGTAAATTTATGTATGGTAGGAGAGGGCTGGCTTGTAGGAAAATGAAAAAGGGAAAAAAGAAAGGAATGGAAAATTAGAAATTGATACGTTCTCAGCATTACGAACATAGCTGGGAGGCAGAACTTTTGATGTTTTGTTGAACACACAGTAGTTAGTACTTGGGAATAACATTAGAATACTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGATCATGAAAATTGCCACTA</pcr_primer_p1>
		<pcr_primer_p2>CGTTCTTGGAGCTAAGAATAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAGATCATGAAAATTGCCACTAGGATGTACGCTGCATCGAATATTAGTAAAATTAAAGCCTCAGTTAGCTCTGACCACAGTCGGTCCGGGATTACTGTAGACATCCGAGTGGATGTCTCCAGCATCTGAAAAAAACTAAGAATAGGAATAAAGAGAATTACGAAGTCAAATCATGGGCGGAAAACTGAGAAAACACCGGGCATTGAGAATTCAAAGATTCAGGGGTAGTTATTCTTAGCTCCAAGAACG</canonical_amplicon>
		<polymorphic_amplicon>GTAGATCATGAAAATTGCCACTAGGATGTACGCTGCATCGAATATTAGTAAAATTAAAGCCTCAGTTAGCTCTGACCACAGTCGGTCCGGGATTACTGTAGACATCCGAGTGGATGTCTCCAGCATCTGAAAAAAACTAAGAATAGGAAWAAAGAGAATTACGAAGTCAAATCATGGGCGGAAAACTGAGAAAACACCGGGCATTGAGAATTCAAAGATTCAGGGGTAGTTATTCTTAGCTCCAAGAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11507</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>321456</contig_pos>
        <strand>+</strand>
        <context>AAAGAGAATT[A/G]YGAAGTCAAR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGATGTCTCCAGCATCTGAAAAAAACTAAGAATAGGAATAAAGAGAATT</left_flank>
        <right_flank>CGAAGTCAAATCATGGGCGGAAAACTGAGAAAACACCGGGCATTGAGAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAAATTTGCTACTGTTTCTTGACATTCTTGAATCCTCAAATTTTCGCTTCTCTGTTCCTTTCTCGTTTTCCCACTTTATAAGATCAGGGGGTTTACCAATAATTTTTTATTATTAACTCAACTTACTCAATTTTGAAACGTTGGCTAACTCACTTTGATAAACGCGTACACCCACATAATCATGCAGTCACTGACAAATAGACTTTTCTTGAATAATAGAAATGATTTGTTGGTCCCCGATTGACCACTAGGTGTCATTGGTTGCTTGACTCTGGAAAATGTTTTCTTCAAAATTCTATATCAACTTCTTCACTTACCGATTCAGTTTCCATAGCTTGTAGATCATGAAAATTGCCACTAGGATGTACGCTGCATCGAATATTAGTAAAATTAAAGCCTCAGTTAGCTCTGACCACAGTCGGTCCGGGATTACTGTAGACATCCGAGTGGATGTCTCCAGCATCTGAAAAAAACTAAGAATAGGAATAAAGAGAATTACGAAGTCAAATCATGGGCGGAAAACTGAGAAAACACCGGGCATTGAGAATTCAAAGATTCAGGGGTAGTTATTCTTAGCTCCAAGAACGAACCACGATTCCTGTGCCCCTCTTTGTTGTTGTCTTTAAGAAAAACAACTCGGAAGACGTCGGACTTTGTCATTCTCGAACTCCCCCTCAATTTCCTTTTCAACAAAATTCAGCTGCAATTCCCCTGTCTCACTTTGTGTTGATTTTTCCCTTCGCCCTTGGAACGGCGAAAATCACAAACAACGTCCAGAGAAAACTTGTTTGTATGCACTAACTAGGTAAATTTATGTATGGTAGGAGAGGGCTGGCTTGTAGGAAAATGAAAAAGGGAAAAAAGAAAGGAATGGAAAATTAGAAATTGATACGTTCTCAGCATTACGAACATAGCTGGGAGGCAGAACTTTTGATGTTTTGTTGAACACACAGTAGTTAGTACTTGGGAATAACATTAGAATACTTATGGATCAGTTT</canonical>
            <polymorphic>CTGAAATTTGCTACTGTTTCTTGACATTCTTGAATCCTCAAATTTTCGCTTCTCTGTTCCTTTCTCGTTTTCCCACTTTATAAGATCAGGGGGTTTACCAATAATTTTTTATTATTAACTCAACTTACTCAATTTTGAAACGTTGGCTAACTCACTTTGATAAACGCGTACACCCACATAATCATGCAGTCACTGACAAATAGACTTTTCTTGAATAATAGAAATGATTTGTTGGTCCCCGATTGACCACTAGGTGTCATTGGTTGCTTGACTCTGGAAAATGTTTTCTTCAAAATTCTATATCAACTTCTTCACTTACCGATTCAGTTTCCATAGCTTGTAGATCATGAAAATTGCCACTAGGATGTACGCTGCATCGAATATTAGTAAAATTAAAGCCTCAGTTAGCTCTGACCACAGTCGGTCCGGGATTACTGTAGACATCCGAGTGGATGTCTCCAGCATCTGAAAAAAACTAAGAATAGGAATAAAGAGAATTRCGAAGTCAAATCATGGGCGGAAAACTGAGAAAACACCGGGCATTGAGAATTCAAAGATTCAGGGGTAGTTATTCTTAGCTCCAAGAACGAACCACGATTCCTGTGCCCCTCTTTGTTGTTGTCTTTAAGAAAAACAACTCGGAAGACGTCGGACTTTGTCATTCTCGAACTCCCCCTCAATTTCCTTTTCAACAAAATTCAGCTGCAATTCCCCTGTCTCACTTTGTGTTGATTTTTCCCTTCGCCCTTGGAACGGCGAAAATCACAAACAACGTCCAGAGAAAACTTGTTTGTATGCACTAACTAGGTAAATTTATGTATGGTAGGAGAGGGCTGGCTTGTAGGAAAATGAAAAAGGGAAAAAAGAAAGGAATGGAAAATTAGAAATTGATACGTTCTCAGCATTACGAACATAGCTGGGAGGCAGAACTTTTGATGTTTTGTTGAACACACAGTAGTTAGTACTTGGGAATAACATTAGAATACTTATGGATCAGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGATCATGAAAATTGCCACTA</pcr_primer_p1>
		<pcr_primer_p2>CGTTCTTGGAGCTAAGAATAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAGATCATGAAAATTGCCACTAGGATGTACGCTGCATCGAATATTAGTAAAATTAAAGCCTCAGTTAGCTCTGACCACAGTCGGTCCGGGATTACTGTAGACATCCGAGTGGATGTCTCCAGCATCTGAAAAAAACTAAGAATAGGAATAAAGAGAATTACGAAGTCAAATCATGGGCGGAAAACTGAGAAAACACCGGGCATTGAGAATTCAAAGATTCAGGGGTAGTTATTCTTAGCTCCAAGAACG</canonical_amplicon>
		<polymorphic_amplicon>GTAGATCATGAAAATTGCCACTAGGATGTACGCTGCATCGAATATTAGTAAAATTAAAGCCTCAGTTAGCTCTGACCACAGTCGGTCCGGGATTACTGTAGACATCCGAGTGGATGTCTCCAGCATCTGAAAAAAACTAAGAATAGGAATAAAGAGAATTRCGAAGTCAAATCATGGGCGGAAAACTGAGAAAACACCGGGCATTGAGAATTCAAAGATTCAGGGGTAGTTATTCTTAGCTCCAAGAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11508</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>321457</contig_pos>
        <strand>+</strand>
        <context>AAGAGAATTR[C/T]GAAGTCAART</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGATGTCTCCAGCATCTGAAAAAAACTAAGAATAGGAATAAAGAGAATTA</left_flank>
        <right_flank>GAAGTCAAATCATGGGCGGAAAACTGAGAAAACACCGGGCATTGAGAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAATTTGCTACTGTTTCTTGACATTCTTGAATCCTCAAATTTTCGCTTCTCTGTTCCTTTCTCGTTTTCCCACTTTATAAGATCAGGGGGTTTACCAATAATTTTTTATTATTAACTCAACTTACTCAATTTTGAAACGTTGGCTAACTCACTTTGATAAACGCGTACACCCACATAATCATGCAGTCACTGACAAATAGACTTTTCTTGAATAATAGAAATGATTTGTTGGTCCCCGATTGACCACTAGGTGTCATTGGTTGCTTGACTCTGGAAAATGTTTTCTTCAAAATTCTATATCAACTTCTTCACTTACCGATTCAGTTTCCATAGCTTGTAGATCATGAAAATTGCCACTAGGATGTACGCTGCATCGAATATTAGTAAAATTAAAGCCTCAGTTAGCTCTGACCACAGTCGGTCCGGGATTACTGTAGACATCCGAGTGGATGTCTCCAGCATCTGAAAAAAACTAAGAATAGGAATAAAGAGAATTACGAAGTCAAATCATGGGCGGAAAACTGAGAAAACACCGGGCATTGAGAATTCAAAGATTCAGGGGTAGTTATTCTTAGCTCCAAGAACGAACCACGATTCCTGTGCCCCTCTTTGTTGTTGTCTTTAAGAAAAACAACTCGGAAGACGTCGGACTTTGTCATTCTCGAACTCCCCCTCAATTTCCTTTTCAACAAAATTCAGCTGCAATTCCCCTGTCTCACTTTGTGTTGATTTTTCCCTTCGCCCTTGGAACGGCGAAAATCACAAACAACGTCCAGAGAAAACTTGTTTGTATGCACTAACTAGGTAAATTTATGTATGGTAGGAGAGGGCTGGCTTGTAGGAAAATGAAAAAGGGAAAAAAGAAAGGAATGGAAAATTAGAAATTGATACGTTCTCAGCATTACGAACATAGCTGGGAGGCAGAACTTTTGATGTTTTGTTGAACACACAGTAGTTAGTACTTGGGAATAACATTAGAATACTTATGGATCAGTTTA</canonical>
            <polymorphic>TGAAATTTGCTACTGTTTCTTGACATTCTTGAATCCTCAAATTTTCGCTTCTCTGTTCCTTTCTCGTTTTCCCACTTTATAAGATCAGGGGGTTTACCAATAATTTTTTATTATTAACTCAACTTACTCAATTTTGAAACGTTGGCTAACTCACTTTGATAAACGCGTACACCCACATAATCATGCAGTCACTGACAAATAGACTTTTCTTGAATAATAGAAATGATTTGTTGGTCCCCGATTGACCACTAGGTGTCATTGGTTGCTTGACTCTGGAAAATGTTTTCTTCAAAATTCTATATCAACTTCTTCACTTACCGATTCAGTTTCCATAGCTTGTAGATCATGAAAATTGCCACTAGGATGTACGCTGCATCGAATATTAGTAAAATTAAAGCCTCAGTTAGCTCTGACCACAGTCGGTCCGGGATTACTGTAGACATCCGAGTGGATGTCTCCAGCATCTGAAAAAAACTAAGAATAGGAATAAAGAGAATTAYGAAGTCAAATCATGGGCGGAAAACTGAGAAAACACCGGGCATTGAGAATTCAAAGATTCAGGGGTAGTTATTCTTAGCTCCAAGAACGAACCACGATTCCTGTGCCCCTCTTTGTTGTTGTCTTTAAGAAAAACAACTCGGAAGACGTCGGACTTTGTCATTCTCGAACTCCCCCTCAATTTCCTTTTCAACAAAATTCAGCTGCAATTCCCCTGTCTCACTTTGTGTTGATTTTTCCCTTCGCCCTTGGAACGGCGAAAATCACAAACAACGTCCAGAGAAAACTTGTTTGTATGCACTAACTAGGTAAATTTATGTATGGTAGGAGAGGGCTGGCTTGTAGGAAAATGAAAAAGGGAAAAAAGAAAGGAATGGAAAATTAGAAATTGATACGTTCTCAGCATTACGAACATAGCTGGGAGGCAGAACTTTTGATGTTTTGTTGAACACACAGTAGTTAGTACTTGGGAATAACATTAGAATACTTATGGATCAGTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGATCATGAAAATTGCCACTA</pcr_primer_p1>
		<pcr_primer_p2>CGTTCTTGGAGCTAAGAATAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAGATCATGAAAATTGCCACTAGGATGTACGCTGCATCGAATATTAGTAAAATTAAAGCCTCAGTTAGCTCTGACCACAGTCGGTCCGGGATTACTGTAGACATCCGAGTGGATGTCTCCAGCATCTGAAAAAAACTAAGAATAGGAATAAAGAGAATTACGAAGTCAAATCATGGGCGGAAAACTGAGAAAACACCGGGCATTGAGAATTCAAAGATTCAGGGGTAGTTATTCTTAGCTCCAAGAACG</canonical_amplicon>
		<polymorphic_amplicon>GTAGATCATGAAAATTGCCACTAGGATGTACGCTGCATCGAATATTAGTAAAATTAAAGCCTCAGTTAGCTCTGACCACAGTCGGTCCGGGATTACTGTAGACATCCGAGTGGATGTCTCCAGCATCTGAAAAAAACTAAGAATAGGAATAAAGAGAATTAYGAAGTCAAATCATGGGCGGAAAACTGAGAAAACACCGGGCATTGAGAATTCAAAGATTCAGGGGTAGTTATTCTTAGCTCCAAGAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11509</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>321466</contig_pos>
        <strand>+</strand>
        <context>RYGAAGTCAA[A/G]TCATGGGCGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGCATCTGAAAAAAACTAAGAATAGGAATAAAGAGAATTACGAAGTCAA</left_flank>
        <right_flank>TCATGGGCGGAAAACTGAGAAAACACCGGGCATTGAGAATTCAAAGATTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACTGTTTCTTGACATTCTTGAATCCTCAAATTTTCGCTTCTCTGTTCCTTTCTCGTTTTCCCACTTTATAAGATCAGGGGGTTTACCAATAATTTTTTATTATTAACTCAACTTACTCAATTTTGAAACGTTGGCTAACTCACTTTGATAAACGCGTACACCCACATAATCATGCAGTCACTGACAAATAGACTTTTCTTGAATAATAGAAATGATTTGTTGGTCCCCGATTGACCACTAGGTGTCATTGGTTGCTTGACTCTGGAAAATGTTTTCTTCAAAATTCTATATCAACTTCTTCACTTACCGATTCAGTTTCCATAGCTTGTAGATCATGAAAATTGCCACTAGGATGTACGCTGCATCGAATATTAGTAAAATTAAAGCCTCAGTTAGCTCTGACCACAGTCGGTCCGGGATTACTGTAGACATCCGAGTGGATGTCTCCAGCATCTGAAAAAAACTAAGAATAGGAATAAAGAGAATTACGAAGTCAAATCATGGGCGGAAAACTGAGAAAACACCGGGCATTGAGAATTCAAAGATTCAGGGGTAGTTATTCTTAGCTCCAAGAACGAACCACGATTCCTGTGCCCCTCTTTGTTGTTGTCTTTAAGAAAAACAACTCGGAAGACGTCGGACTTTGTCATTCTCGAACTCCCCCTCAATTTCCTTTTCAACAAAATTCAGCTGCAATTCCCCTGTCTCACTTTGTGTTGATTTTTCCCTTCGCCCTTGGAACGGCGAAAATCACAAACAACGTCCAGAGAAAACTTGTTTGTATGCACTAACTAGGTAAATTTATGTATGGTAGGAGAGGGCTGGCTTGTAGGAAAATGAAAAAGGGAAAAAAGAAAGGAATGGAAAATTAGAAATTGATACGTTCTCAGCATTACGAACATAGCTGGGAGGCAGAACTTTTGATGTTTTGTTGAACACACAGTAGTTAGTACTTGGGAATAACATTAGAATACTTATGGATCAGTTTAAAATAAACA</canonical>
            <polymorphic>CTACTGTTTCTTGACATTCTTGAATCCTCAAATTTTCGCTTCTCTGTTCCTTTCTCGTTTTCCCACTTTATAAGATCAGGGGGTTTACCAATAATTTTTTATTATTAACTCAACTTACTCAATTTTGAAACGTTGGCTAACTCACTTTGATAAACGCGTACACCCACATAATCATGCAGTCACTGACAAATAGACTTTTCTTGAATAATAGAAATGATTTGTTGGTCCCCGATTGACCACTAGGTGTCATTGGTTGCTTGACTCTGGAAAATGTTTTCTTCAAAATTCTATATCAACTTCTTCACTTACCGATTCAGTTTCCATAGCTTGTAGATCATGAAAATTGCCACTAGGATGTACGCTGCATCGAATATTAGTAAAATTAAAGCCTCAGTTAGCTCTGACCACAGTCGGTCCGGGATTACTGTAGACATCCGAGTGGATGTCTCCAGCATCTGAAAAAAACTAAGAATAGGAATAAAGAGAATTACGAAGTCAARTCATGGGCGGAAAACTGAGAAAACACCGGGCATTGAGAATTCAAAGATTCAGGGGTAGTTATTCTTAGCTCCAAGAACGAACCACGATTCCTGTGCCCCTCTTTGTTGTTGTCTTTAAGAAAAACAACTCGGAAGACGTCGGACTTTGTCATTCTCGAACTCCCCCTCAATTTCCTTTTCAACAAAATTCAGCTGCAATTCCCCTGTCTCACTTTGTGTTGATTTTTCCCTTCGCCCTTGGAACGGCGAAAATCACAAACAACGTCCAGAGAAAACTTGTTTGTATGCACTAACTAGGTAAATTTATGTATGGTAGGAGAGGGCTGGCTTGTAGGAAAATGAAAAAGGGAAAAAAGAAAGGAATGGAAAATTAGAAATTGATACGTTCTCAGCATTACGAACATAGCTGGGAGGCAGAACTTTTGATGTTTTGTTGAACACACAGTAGTTAGTACTTGGGAATAACATTAGAATACTTATGGATCAGTTTAAAATAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGATCATGAAAATTGCCACTA</pcr_primer_p1>
		<pcr_primer_p2>CGTTCTTGGAGCTAAGAATAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAGATCATGAAAATTGCCACTAGGATGTACGCTGCATCGAATATTAGTAAAATTAAAGCCTCAGTTAGCTCTGACCACAGTCGGTCCGGGATTACTGTAGACATCCGAGTGGATGTCTCCAGCATCTGAAAAAAACTAAGAATAGGAATAAAGAGAATTACGAAGTCAAATCATGGGCGGAAAACTGAGAAAACACCGGGCATTGAGAATTCAAAGATTCAGGGGTAGTTATTCTTAGCTCCAAGAACG</canonical_amplicon>
		<polymorphic_amplicon>GTAGATCATGAAAATTGCCACTAGGATGTACGCTGCATCGAATATTAGTAAAATTAAAGCCTCAGTTAGCTCTGACCACAGTCGGTCCGGGATTACTGTAGACATCCGAGTGGATGTCTCCAGCATCTGAAAAAAACTAAGAATAGGAATAAAGAGAATTACGAAGTCAARTCATGGGCGGAAAACTGAGAAAACACCGGGCATTGAGAATTCAAAGATTCAGGGGTAGTTATTCTTAGCTCCAAGAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11510</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>321596</contig_pos>
        <strand>+</strand>
        <context>AAAAACAACT[C/T]GGAAGACGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACCACGATTCCTGTGCCCCTCTTTGTTGTTGTCTTTAAGAAAAACAACT</left_flank>
        <right_flank>GGAAGACGTCGGACTTTGTCATTCTCGAACTCCCCCTCAATTTCCTTTTC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTGGCTAACTCACTTTGATAAACGCGTACACCCACATAATCATGCAGTCACTGACAAATAGACTTTTCTTGAATAATAGAAATGATTTGTTGGTCCCCGATTGACCACTAGGTGTCATTGGTTGCTTGACTCTGGAAAATGTTTTCTTCAAAATTCTATATCAACTTCTTCACTTACCGATTCAGTTTCCATAGCTTGTAGATCATGAAAATTGCCACTAGGATGTACGCTGCATCGAATATTAGTAAAATTAAAGCCTCAGTTAGCTCTGACCACAGTCGGTCCGGGATTACTGTAGACATCCGAGTGGATGTCTCCAGCATCTGAAAAAAACTAAGAATAGGAATAAAGAGAATTACGAAGTCAAATCATGGGCGGAAAACTGAGAAAACACCGGGCATTGAGAATTCAAAGATTCAGGGGTAGTTATTCTTAGCTCCAAGAACGAACCACGATTCCTGTGCCCCTCTTTGTTGTTGTCTTTAAGAAAAACAACTCGGAAGACGTCGGACTTTGTCATTCTCGAACTCCCCCTCAATTTCCTTTTCAACAAAATTCAGCTGCAATTCCCCTGTCTCACTTTGTGTTGATTTTTCCCTTCGCCCTTGGAACGGCGAAAATCACAAACAACGTCCAGAGAAAACTTGTTTGTATGCACTAACTAGGTAAATTTATGTATGGTAGGAGAGGGCTGGCTTGTAGGAAAATGAAAAAGGGAAAAAAGAAAGGAATGGAAAATTAGAAATTGATACGTTCTCAGCATTACGAACATAGCTGGGAGGCAGAACTTTTGATGTTTTGTTGAACACACAGTAGTTAGTACTTGGGAATAACATTAGAATACTTATGGATCAGTTTAAAATAAACAAAAACAGAAGGTTTCACCCTTCTTGTTTCAAAATTCCTGCTCAAAGAGCCAATAAAAAAGATTCTCATGAAAAAAGAAGAAATGAGGAAGTGAATGTTTTATTTCAGCGTAAAAAGAATATGAAAAATCT</canonical>
            <polymorphic>CGTTGGCTAACTCACTTTGATAAACGCGTACACCCACATAATCATGCAGTCACTGACAAATAGACTTTTCTTGAATAATAGAAATGATTTGTTGGTCCCCGATTGACCACTAGGTGTCATTGGTTGCTTGACTCTGGAAAATGTTTTCTTCAAAATTCTATATCAACTTCTTCACTTACCGATTCAGTTTCCATAGCTTGTAGATCATGAAAATTGCCACTAGGATGTACGCTGCATCGAATATTAGTAAAATTAAAGCCTCAGTTAGCTCTGACCACAGTCGGTCCGGGATTACTGTAGACATCCGAGTGGATGTCTCCAGCATCTGAAAAAAACTAAGAATAGGAATAAAGAGAATTACGAAGTCAAATCATGGGCGGAAAACTGAGAAAACACCGGGCATTGAGAATTCAAAGATTCAGGGGTAGTTATTCTTAGCTCCAAGAACGAACCACGATTCCTGTGCCCCTCTTTGTTGTTGTCTTTAAGAAAAACAACTYGGAAGACGTCGGACTTTGTCATTCTCGAACTCCCCCTCAATTTCCTTTTCAACAAAATTCAGCTGCAATTCCCCTGTCTCACTTTGTGTTGATTTTTCCCTTCGCCCTTGGAACGGCGAAAATCACAAACAACGTCCAGAGAAAACTTGTTTGTATGCACTAACTAGGTAAATTTATGTATGGTAGGAGAGGGCTGGCTTGTAGGAAAATGAAAAAGGGAAAAAAGAAAGGAATGGAAAATTAGAAATTGATACGTTCTCAGCATTACGAACATAGCTGGGAGGCAGAACTTTTGATGTTTTGTTGAACACACAGTAGTTAGTACTTGGGAATAACATTAGAATACTTATGGATCAGTTTAAAATAAACAAAAACAGAAGGTTTCACCCTTCTTGTTTCAAAATTCCTGCTCAAAGAGCCAATAAAAAAGATTCTCATGAAAAAAGAAGAAATGAGGAAGTGAATGTTTTATTTCAGCGTAAAAAGAATATGAAAAATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>489 272 174 34 21 10</canonical_bands>
                <polymorphic_bands>489 272 184 34 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAGATTCAGGGGTAGTTATTC</pcr_primer_p1>
		<pcr_primer_p2>AGTGCATACAAACAAGTTTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAGATTCAGGGGTAGTTATTCTTAGCTCCAAGAACGAACCACGATTCCTGTGCCCCTCTTTGTTGTTGTCTTTAAGAAAAACAACTCGGAAGACGTCGGACTTTGTCATTCTCGAACTCCCCCTCAATTTCCTTTTCAACAAAATTCAGCTGCAATTCCCCTGTCTCACTTTGTGTTGATTTTTCCCTTCGCCCTTGGAACGGCGAAAATCACAAACAACGTCCAGAGAAAACTTGTTTGTATGCACT</canonical_amplicon>
		<polymorphic_amplicon>CAAAGATTCAGGGGTAGTTATTCTTAGCTCCAAGAACGAACCACGATTCCTGTGCCCCTCTTTGTTGTTGTCTTTAAGAAAAACAACTYGGAAGACGTCGGACTTTGTCATTCTCGAACTCCCCCTCAATTTCCTTTTCAACAAAATTCAGCTGCAATTCCCCTGTCTCACTTTGTGTTGATTTTTCCCTTCGCCCTTGGAACGGCGAAAATCACAAACAACGTCCAGAGAAAACTTGTTTGTATGCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11511</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>321734</contig_pos>
        <strand>+</strand>
        <context>AACAACGTCC[A/C]GAGAAAACTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTGATTTTTCCCTTCGCCCTTGGAACGGCGAAAATCACAAACAACGTCC</left_flank>
        <right_flank>GAGAAAACTTGTTTGTATGCACTAACTAGGTAAATTTATGTATGGTAGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGTTTTCTTCAAAATTCTATATCAACTTCTTCACTTACCGATTCAGTTTCCATAGCTTGTAGATCATGAAAATTGCCACTAGGATGTACGCTGCATCGAATATTAGTAAAATTAAAGCCTCAGTTAGCTCTGACCACAGTCGGTCCGGGATTACTGTAGACATCCGAGTGGATGTCTCCAGCATCTGAAAAAAACTAAGAATAGGAATAAAGAGAATTACGAAGTCAAATCATGGGCGGAAAACTGAGAAAACACCGGGCATTGAGAATTCAAAGATTCAGGGGTAGTTATTCTTAGCTCCAAGAACGAACCACGATTCCTGTGCCCCTCTTTGTTGTTGTCTTTAAGAAAAACAACTCGGAAGACGTCGGACTTTGTCATTCTCGAACTCCCCCTCAATTTCCTTTTCAACAAAATTCAGCTGCAATTCCCCTGTCTCACTTTGTGTTGATTTTTCCCTTCGCCCTTGGAACGGCGAAAATCACAAACAACGTCCAGAGAAAACTTGTTTGTATGCACTAACTAGGTAAATTTATGTATGGTAGGAGAGGGCTGGCTTGTAGGAAAATGAAAAAGGGAAAAAAGAAAGGAATGGAAAATTAGAAATTGATACGTTCTCAGCATTACGAACATAGCTGGGAGGCAGAACTTTTGATGTTTTGTTGAACACACAGTAGTTAGTACTTGGGAATAACATTAGAATACTTATGGATCAGTTTAAAATAAACAAAAACAGAAGGTTTCACCCTTCTTGTTTCAAAATTCCTGCTCAAAGAGCCAATAAAAAAGATTCTCATGAAAAAAGAAGAAATGAGGAAGTGAATGTTTTATTTCAGCGTAAAAAGAATATGAAAAATCTAAGATGCTCATAAAGCAATTTTTAAAAAATAGAGTCTAAAAATCCTAACTTCACGTACAATGAAGTCAATAGACTGAAAACATAATTTCAGAGTTTCGAAATGCGTTTTCGGATAGAACACGTTCTGAAAAAAATCCA</canonical>
            <polymorphic>AAATGTTTTCTTCAAAATTCTATATCAACTTCTTCACTTACCGATTCAGTTTCCATAGCTTGTAGATCATGAAAATTGCCACTAGGATGTACGCTGCATCGAATATTAGTAAAATTAAAGCCTCAGTTAGCTCTGACCACAGTCGGTCCGGGATTACTGTAGACATCCGAGTGGATGTCTCCAGCATCTGAAAAAAACTAAGAATAGGAATAAAGAGAATTACGAAGTCAAATCATGGGCGGAAAACTGAGAAAACACCGGGCATTGAGAATTCAAAGATTCAGGGGTAGTTATTCTTAGCTCCAAGAACGAACCACGATTCCTGTGCCCCTCTTTGTTGTTGTCTTTAAGAAAAACAACTCGGAAGACGTCGGACTTTGTCATTCTCGAACTCCCCCTCAATTTCCTTTTCAACAAAATTCAGCTGCAATTCCCCTGTCTCACTTTGTGTTGATTTTTCCCTTCGCCCTTGGAACGGCGAAAATCACAAACAACGTCCMGAGAAAACTTGTTTGTATGCACTAACTAGGTAAATTTATGTATGGTAGGAGAGGGCTGGCTTGTAGGAAAATGAAAAAGGGAAAAAAGAAAGGAATGGAAAATTAGAAATTGATACGTTCTCAGCATTACGAACATAGCTGGGAGGCAGAACTTTTGATGTTTTGTTGAACACACAGTAGTTAGTACTTGGGAATAACATTAGAATACTTATGGATCAGTTTAAAATAAACAAAAACAGAAGGTTTCACCCTTCTTGTTTCAAAATTCCTGCTCAAAGAGCCAATAAAAAAGATTCTCATGAAAAAAGAAGAAATGAGGAAGTGAATGTTTTATTTCAGCGTAAAAAGAATATGAAAAATCTAAGATGCTCATAAAGCAATTTTTAAAAAATAGAGTCTAAAAATCCTAACTTCACGTACAATGAAGTCAATAGACTGAAAACATAATTTCAGAGTTTCGAAATGCGTTTTCGGATAGAACACGTTCTGAAAAAAATCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCCCTGTCTCACTTTGT</pcr_primer_p1>
		<pcr_primer_p2>TACTGTGTGTTCAACAAAACATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCCCCTGTCTCACTTTGTGTTGATTTTTCCCTTCGCCCTTGGAACGGCGAAAATCACAAACAACGTCCAGAGAAAACTTGTTTGTATGCACTAACTAGGTAAATTTATGTATGGTAGGAGAGGGCTGGCTTGTAGGAAAATGAAAAAGGGAAAAAAGAAAGGAATGGAAAATTAGAAATTGATACGTTCTCAGCATTACGAACATAGCTGGGAGGCAGAACTTTTGATGTTTTGTTGAACACACAGTA</canonical_amplicon>
		<polymorphic_amplicon>ATTCCCCTGTCTCACTTTGTGTTGATTTTTCCCTTCGCCCTTGGAACGGCGAAAATCACAAACAACGTCCMGAGAAAACTTGTTTGTATGCACTAACTAGGTAAATTTATGTATGGTAGGAGAGGGCTGGCTTGTAGGAAAATGAAAAAGGGAAAAAAGAAAGGAATGGAAAATTAGAAATTGATACGTTCTCAGCATTACGAACATAGCTGGGAGGCAGAACTTTTGATGTTTTGTTGAACACACAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11512</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>323774</contig_pos>
        <strand>+</strand>
        <context>GACATTAGGA[G/T]AGAGTTTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTTACAGAAAAAACAACTAGAGGGTTTTAACAATGTTAAGACATTAGGA</left_flank>
        <right_flank>AGAGTTTGAACGATTGCTTTATTTGAGTTATGAAATATTTCGAATTTTCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACATGACGAGCTTGAAAAAATAAAGTTTTGCAAAATGCGGCGTGTGAGGCTATAAACATGTGACTCATCATAACCGAAAAGCATTTTTGGGCGTACCTATGTTGTTCCATTAGGCTCCGAAGGACCGCTCGTTTTGTTATTCTGTTTTTTTTCGTCAGCTAGTCAAGTCTATGAAATTACTTTTCGAAAAATTTGATAGAAGGAAGTTGGATATATAAAAGGTTGGGAAAATAGTTTCATTGTGCCGGAAATTGCTTTTTTCCCCGCACAATTGTACCATTTAACATGACACACGGGATCTAGGATCATGATGTTTTCCTATTCAAAACGTAGTTTAGTGGTGTTGAAAATTGAGTCATATAAATTGAGAATTTGGGGTATAGGAAGGGAGGGGGATAAGGATCACATGGATAGGCTTATTTAGGTGTTAGATACCAAACCCGAGCTGTTACAGAAAAAACAACTAGAGGGTTTTAACAATGTTAAGACATTAGGATAGAGTTTGAACGATTGCTTTATTTGAGTTATGAAATATTTCGAATTTTCGAGATTCAGTACTTCAGAATTTCCAAACTTAAAAGTTTTAGAAAATGAATTTTTGGGAAATTGCTAATTCAAAAATGCGAAAATTTCCAAGAAATCCAGAATTTTCAACAATTTCAAAAAAAAATCTGAGATTCGGAATTTCCTGTAATTATAAGTTTTTGAAAATGAGATATCAGAAAATTCTAAAAGTTTTGGAACTCAAGAAAAAGCGGATTTTCAAAATACCAAAAATTCAGGAATTTTGAATTCCAAAATCTCAAAACTTGAGTTTTCAAAATATTTCAATTCTCAAAATTCGAAAATAAAACTTTTTGAATTCGAAACCAATAAGTTTCCAAAAATCCGAATTTCGGAATATTCCAATATTCCAAATATTCAAAGTTGTGAAAGTCAGTATTTTGATATAGCCGAATATTCTAAACTTTTGAATATCGGAACTTTGAATTTATCC</canonical>
            <polymorphic>AAAACATGACGAGCTTGAAAAAATAAAGTTTTGCAAAATGCGGCGTGTGAGGCTATAAACATGTGACTCATCATAACCGAAAAGCATTTTTGGGCGTACCTATGTTGTTCCATTAGGCTCCGAAGGACCGCTCGTTTTGTTATTCTGTTTTTTTTCGTCAGCTAGTCAAGTCTATGAAATTACTTTTCGAAAAATTTGATAGAAGGAAGTTGGATATATAAAAGGTTGGGAAAATAGTTTCATTGTGCCGGAAATTGCTTTTTTCCCCGCACAATTGTACCATTTAACATGACACACGGGATCTAGGATCATGATGTTTTCCTATTCAAAACGTAGTTTAGTGGTGTTGAAAATTGAGTCATATAAATTGAGAATTTGGGGTATAGGAAGGGAGGGGGATAAGGATCACATGGATAGGCTTATTTAGGTGTTAGATACCAAACCCGAGCTGTTACAGAAAAAACAACTAGAGGGTTTTAACAATGTTAAGACATTAGGAKAGAGTTTGAACGATTGCTTTATTTGAGTTATGAAATATTTCGAATTTTCGAGATTCAGTACTTCAGAATTTCCAAACTTAAAAGTTTTAGAAAATGAATTTTTGGGAAATTGCTAATTCAAAAATGCGAAAATTTCCAAGAAATCCAGAATTTTCAACAATTTCAAAAAAAAATCTGAGATTCGGAATTTCCTGTAATTATAAGTTTTTGAAAATGAGATATCAGAAAATTCTAAAAGTTTTGGAACTCAAGAAAAAGCGGATTTTCAAAATACCAAAAATTCAGGAATTTTGAATTCCAAAATCTCAAAACTTGAGTTTTCAAAATATTTCAATTCTCAAAATTCGAAAATAAAACTTTTTGAATTCGAAACCAATAAGTTTCCAAAAATCCGAATTTCGGAATATTCCAATATTCCAAATATTCAAAGTTGTGAAAGTCAGTATTTTGATATAGCCGAATATTCTAAACTTTTGAATATCGGAACTTTGAATTTATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACGTAGTTTAGTGGTGTTGA</pcr_primer_p1>
		<pcr_primer_p2>GTTTGGAAATTCTGAAGTACTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAACGTAGTTTAGTGGTGTTGAAAATTGAGTCATATAAATTGAGAATTTGGGGTATAGGAAGGGAGGGGGATAAGGATCACATGGATAGGCTTATTTAGGTGTTAGATACCAAACCCGAGCTGTTACAGAAAAAACAACTAGAGGGTTTTAACAATGTTAAGACATTAGGATAGAGTTTGAACGATTGCTTTATTTGAGTTATGAAATATTTCGAATTTTCGAGATTCAGTACTTCAGAATTTCCAAAC</canonical_amplicon>
		<polymorphic_amplicon>AAAACGTAGTTTAGTGGTGTTGAAAATTGAGTCATATAAATTGAGAATTTGGGGTATAGGAAGGGAGGGGGATAAGGATCACATGGATAGGCTTATTTAGGTGTTAGATACCAAACCCGAGCTGTTACAGAAAAAACAACTAGAGGGTTTTAACAATGTTAAGACATTAGGAKAGAGTTTGAACGATTGCTTTATTTGAGTTATGAAATATTTCGAATTTTCGAGATTCAGTACTTCAGAATTTCCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11513</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>323744</contig_pos>
        <strand>+</strand>
        <context>AAAACAACTA[A/G]AGGGTTTTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATTTAGGTGTTAGATACCAAACCCGAGCTGTTACAGAAAAAACAACTA</left_flank>
        <right_flank>AGGGTTTTAACAATGTTAAGACATTAGGATAGAGTTTGAACGATTGCTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAAATCCGTCTATGTCTCTATGACTAAGGAAAACATGACGAGCTTGAAAAAATAAAGTTTTGCAAAATGCGGCGTGTGAGGCTATAAACATGTGACTCATCATAACCGAAAAGCATTTTTGGGCGTACCTATGTTGTTCCATTAGGCTCCGAAGGACCGCTCGTTTTGTTATTCTGTTTTTTTTCGTCAGCTAGTCAAGTCTATGAAATTACTTTTCGAAAAATTTGATAGAAGGAAGTTGGATATATAAAAGGTTGGGAAAATAGTTTCATTGTGCCGGAAATTGCTTTTTTCCCCGCACAATTGTACCATTTAACATGACACACGGGATCTAGGATCATGATGTTTTCCTATTCAAAACGTAGTTTAGTGGTGTTGAAAATTGAGTCATATAAATTGAGAATTTGGGGTATAGGAAGGGAGGGGGATAAGGATCACATGGATAGGCTTATTTAGGTGTTAGATACCAAACCCGAGCTGTTACAGAAAAAACAACTAGAGGGTTTTAACAATGTTAAGACATTAGGATAGAGTTTGAACGATTGCTTTATTTGAGTTATGAAATATTTCGAATTTTCGAGATTCAGTACTTCAGAATTTCCAAACTTAAAAGTTTTAGAAAATGAATTTTTGGGAAATTGCTAATTCAAAAATGCGAAAATTTCCAAGAAATCCAGAATTTTCAACAATTTCAAAAAAAAATCTGAGATTCGGAATTTCCTGTAATTATAAGTTTTTGAAAATGAGATATCAGAAAATTCTAAAAGTTTTGGAACTCAAGAAAAAGCGGATTTTCAAAATACCAAAAATTCAGGAATTTTGAATTCCAAAATCTCAAAACTTGAGTTTTCAAAATATTTCAATTCTCAAAATTCGAAAATAAAACTTTTTGAATTCGAAACCAATAAGTTTCCAAAAATCCGAATTTCGGAATATTCCAATATTCCAAATATTCAAAGTTGTGAAAGTCAGTATTTTGATATAGCCGAATATTCTAAA</canonical>
            <polymorphic>GTAAATCCGTCTATGTCTCTATGACTAAGGAAAACATGACGAGCTTGAAAAAATAAAGTTTTGCAAAATGCGGCGTGTGAGGCTATAAACATGTGACTCATCATAACCGAAAAGCATTTTTGGGCGTACCTATGTTGTTCCATTAGGCTCCGAAGGACCGCTCGTTTTGTTATTCTGTTTTTTTTCGTCAGCTAGTCAAGTCTATGAAATTACTTTTCGAAAAATTTGATAGAAGGAAGTTGGATATATAAAAGGTTGGGAAAATAGTTTCATTGTGCCGGAAATTGCTTTTTTCCCCGCACAATTGTACCATTTAACATGACACACGGGATCTAGGATCATGATGTTTTCCTATTCAAAACGTAGTTTAGTGGTGTTGAAAATTGAGTCATATAAATTGAGAATTTGGGGTATAGGAAGGGAGGGGGATAAGGATCACATGGATAGGCTTATTTAGGTGTTAGATACCAAACCCGAGCTGTTACAGAAAAAACAACTARAGGGTTTTAACAATGTTAAGACATTAGGATAGAGTTTGAACGATTGCTTTATTTGAGTTATGAAATATTTCGAATTTTCGAGATTCAGTACTTCAGAATTTCCAAACTTAAAAGTTTTAGAAAATGAATTTTTGGGAAATTGCTAATTCAAAAATGCGAAAATTTCCAAGAAATCCAGAATTTTCAACAATTTCAAAAAAAAATCTGAGATTCGGAATTTCCTGTAATTATAAGTTTTTGAAAATGAGATATCAGAAAATTCTAAAAGTTTTGGAACTCAAGAAAAAGCGGATTTTCAAAATACCAAAAATTCAGGAATTTTGAATTCCAAAATCTCAAAACTTGAGTTTTCAAAATATTTCAATTCTCAAAATTCGAAAATAAAACTTTTTGAATTCGAAACCAATAAGTTTCCAAAAATCCGAATTTCGGAATATTCCAATATTCCAAATATTCAAAGTTGTGAAAGTCAGTATTTTGATATAGCCGAATATTCTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 192 164 141</canonical_bands>
                <polymorphic_bands>667 192 141</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACGTAGTTTAGTGGTGTTGA</pcr_primer_p1>
		<pcr_primer_p2>GTTTGGAAATTCTGAAGTACTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAACGTAGTTTAGTGGTGTTGAAAATTGAGTCATATAAATTGAGAATTTGGGGTATAGGAAGGGAGGGGGATAAGGATCACATGGATAGGCTTATTTAGGTGTTAGATACCAAACCCGAGCTGTTACAGAAAAAACAACTAGAGGGTTTTAACAATGTTAAGACATTAGGATAGAGTTTGAACGATTGCTTTATTTGAGTTATGAAATATTTCGAATTTTCGAGATTCAGTACTTCAGAATTTCCAAAC</canonical_amplicon>
		<polymorphic_amplicon>AAAACGTAGTTTAGTGGTGTTGAAAATTGAGTCATATAAATTGAGAATTTGGGGTATAGGAAGGGAGGGGGATAAGGATCACATGGATAGGCTTATTTAGGTGTTAGATACCAAACCCGAGCTGTTACAGAAAAAACAACTARAGGGTTTTAACAATGTTAAGACATTAGGATAGAGTTTGAACGATTGCTTTATTTGAGTTATGAAATATTTCGAATTTTCGAGATTCAGTACTTCAGAATTTCCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11514</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>323717</contig_pos>
        <strand>+</strand>
        <context>AGATACCAAA[C/T]CCGAGCTGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGGGGATAAGGATCACATGGATAGGCTTATTTAGGTGTTAGATACCAAA</left_flank>
        <right_flank>CCGAGCTGTTACAGAAAAAACAACTAGAGGGTTTTAACAATGTTAAGACA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTAGGCGTTCGTGTGCCTCTTTAGGAGTAAATCCGTCTATGTCTCTATGACTAAGGAAAACATGACGAGCTTGAAAAAATAAAGTTTTGCAAAATGCGGCGTGTGAGGCTATAAACATGTGACTCATCATAACCGAAAAGCATTTTTGGGCGTACCTATGTTGTTCCATTAGGCTCCGAAGGACCGCTCGTTTTGTTATTCTGTTTTTTTTCGTCAGCTAGTCAAGTCTATGAAATTACTTTTCGAAAAATTTGATAGAAGGAAGTTGGATATATAAAAGGTTGGGAAAATAGTTTCATTGTGCCGGAAATTGCTTTTTTCCCCGCACAATTGTACCATTTAACATGACACACGGGATCTAGGATCATGATGTTTTCCTATTCAAAACGTAGTTTAGTGGTGTTGAAAATTGAGTCATATAAATTGAGAATTTGGGGTATAGGAAGGGAGGGGGATAAGGATCACATGGATAGGCTTATTTAGGTGTTAGATACCAAACCCGAGCTGTTACAGAAAAAACAACTAGAGGGTTTTAACAATGTTAAGACATTAGGATAGAGTTTGAACGATTGCTTTATTTGAGTTATGAAATATTTCGAATTTTCGAGATTCAGTACTTCAGAATTTCCAAACTTAAAAGTTTTAGAAAATGAATTTTTGGGAAATTGCTAATTCAAAAATGCGAAAATTTCCAAGAAATCCAGAATTTTCAACAATTTCAAAAAAAAATCTGAGATTCGGAATTTCCTGTAATTATAAGTTTTTGAAAATGAGATATCAGAAAATTCTAAAAGTTTTGGAACTCAAGAAAAAGCGGATTTTCAAAATACCAAAAATTCAGGAATTTTGAATTCCAAAATCTCAAAACTTGAGTTTTCAAAATATTTCAATTCTCAAAATTCGAAAATAAAACTTTTTGAATTCGAAACCAATAAGTTTCCAAAAATCCGAATTTCGGAATATTCCAATATTCCAAATATTCAAAGTTGTGAAAGTCAG</canonical>
            <polymorphic>ACTAGGCGTTCGTGTGCCTCTTTAGGAGTAAATCCGTCTATGTCTCTATGACTAAGGAAAACATGACGAGCTTGAAAAAATAAAGTTTTGCAAAATGCGGCGTGTGAGGCTATAAACATGTGACTCATCATAACCGAAAAGCATTTTTGGGCGTACCTATGTTGTTCCATTAGGCTCCGAAGGACCGCTCGTTTTGTTATTCTGTTTTTTTTCGTCAGCTAGTCAAGTCTATGAAATTACTTTTCGAAAAATTTGATAGAAGGAAGTTGGATATATAAAAGGTTGGGAAAATAGTTTCATTGTGCCGGAAATTGCTTTTTTCCCCGCACAATTGTACCATTTAACATGACACACGGGATCTAGGATCATGATGTTTTCCTATTCAAAACGTAGTTTAGTGGTGTTGAAAATTGAGTCATATAAATTGAGAATTTGGGGTATAGGAAGGGAGGGGGATAAGGATCACATGGATAGGCTTATTTAGGTGTTAGATACCAAAYCCGAGCTGTTACAGAAAAAACAACTAGAGGGTTTTAACAATGTTAAGACATTAGGATAGAGTTTGAACGATTGCTTTATTTGAGTTATGAAATATTTCGAATTTTCGAGATTCAGTACTTCAGAATTTCCAAACTTAAAAGTTTTAGAAAATGAATTTTTGGGAAATTGCTAATTCAAAAATGCGAAAATTTCCAAGAAATCCAGAATTTTCAACAATTTCAAAAAAAAATCTGAGATTCGGAATTTCCTGTAATTATAAGTTTTTGAAAATGAGATATCAGAAAATTCTAAAAGTTTTGGAACTCAAGAAAAAGCGGATTTTCAAAATACCAAAAATTCAGGAATTTTGAATTCCAAAATCTCAAAACTTGAGTTTTCAAAATATTTCAATTCTCAAAATTCGAAAATAAAACTTTTTGAATTCGAAACCAATAAGTTTCCAAAAATCCGAATTTCGGAATATTCCAATATTCCAAATATTCAAAGTTGTGAAAGTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACGTAGTTTAGTGGTGTTGA</pcr_primer_p1>
		<pcr_primer_p2>GTTTGGAAATTCTGAAGTACTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAACGTAGTTTAGTGGTGTTGAAAATTGAGTCATATAAATTGAGAATTTGGGGTATAGGAAGGGAGGGGGATAAGGATCACATGGATAGGCTTATTTAGGTGTTAGATACCAAACCCGAGCTGTTACAGAAAAAACAACTAGAGGGTTTTAACAATGTTAAGACATTAGGATAGAGTTTGAACGATTGCTTTATTTGAGTTATGAAATATTTCGAATTTTCGAGATTCAGTACTTCAGAATTTCCAAAC</canonical_amplicon>
		<polymorphic_amplicon>AAAACGTAGTTTAGTGGTGTTGAAAATTGAGTCATATAAATTGAGAATTTGGGGTATAGGAAGGGAGGGGGATAAGGATCACATGGATAGGCTTATTTAGGTGTTAGATACCAAAYCCGAGCTGTTACAGAAAAAACAACTAGAGGGTTTTAACAATGTTAAGACATTAGGATAGAGTTTGAACGATTGCTTTATTTGAGTTATGAAATATTTCGAATTTTCGAGATTCAGTACTTCAGAATTTCCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11515</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>323666</contig_pos>
        <strand>+</strand>
        <context>TATAGGAAGG[A/G]AGGGGGATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGTGTTGAAAATTGAGTCATATAAATTGAGAATTTGGGGTATAGGAAGG</left_flank>
        <right_flank>AGGGGGATAAGGATCACATGGATAGGCTTATTTAGGTGTTAGATACCAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAACGGACTAGGAAGCAAAAAATTTATTTTTTTTATCCTCGTTTATTCAACTAGGCGTTCGTGTGCCTCTTTAGGAGTAAATCCGTCTATGTCTCTATGACTAAGGAAAACATGACGAGCTTGAAAAAATAAAGTTTTGCAAAATGCGGCGTGTGAGGCTATAAACATGTGACTCATCATAACCGAAAAGCATTTTTGGGCGTACCTATGTTGTTCCATTAGGCTCCGAAGGACCGCTCGTTTTGTTATTCTGTTTTTTTTCGTCAGCTAGTCAAGTCTATGAAATTACTTTTCGAAAAATTTGATAGAAGGAAGTTGGATATATAAAAGGTTGGGAAAATAGTTTCATTGTGCCGGAAATTGCTTTTTTCCCCGCACAATTGTACCATTTAACATGACACACGGGATCTAGGATCATGATGTTTTCCTATTCAAAACGTAGTTTAGTGGTGTTGAAAATTGAGTCATATAAATTGAGAATTTGGGGTATAGGAAGGGAGGGGGATAAGGATCACATGGATAGGCTTATTTAGGTGTTAGATACCAAACCCGAGCTGTTACAGAAAAAACAACTAGAGGGTTTTAACAATGTTAAGACATTAGGATAGAGTTTGAACGATTGCTTTATTTGAGTTATGAAATATTTCGAATTTTCGAGATTCAGTACTTCAGAATTTCCAAACTTAAAAGTTTTAGAAAATGAATTTTTGGGAAATTGCTAATTCAAAAATGCGAAAATTTCCAAGAAATCCAGAATTTTCAACAATTTCAAAAAAAAATCTGAGATTCGGAATTTCCTGTAATTATAAGTTTTTGAAAATGAGATATCAGAAAATTCTAAAAGTTTTGGAACTCAAGAAAAAGCGGATTTTCAAAATACCAAAAATTCAGGAATTTTGAATTCCAAAATCTCAAAACTTGAGTTTTCAAAATATTTCAATTCTCAAAATTCGAAAATAAAACTTTTTGAATTCGAAACCAATAAGTTTCCAAAAATC</canonical>
            <polymorphic>TCAAACGGACTAGGAAGCAAAAAATTTATTTTTTTTATCCTCGTTTATTCAACTAGGCGTTCGTGTGCCTCTTTAGGAGTAAATCCGTCTATGTCTCTATGACTAAGGAAAACATGACGAGCTTGAAAAAATAAAGTTTTGCAAAATGCGGCGTGTGAGGCTATAAACATGTGACTCATCATAACCGAAAAGCATTTTTGGGCGTACCTATGTTGTTCCATTAGGCTCCGAAGGACCGCTCGTTTTGTTATTCTGTTTTTTTTCGTCAGCTAGTCAAGTCTATGAAATTACTTTTCGAAAAATTTGATAGAAGGAAGTTGGATATATAAAAGGTTGGGAAAATAGTTTCATTGTGCCGGAAATTGCTTTTTTCCCCGCACAATTGTACCATTTAACATGACACACGGGATCTAGGATCATGATGTTTTCCTATTCAAAACGTAGTTTAGTGGTGTTGAAAATTGAGTCATATAAATTGAGAATTTGGGGTATAGGAAGGRAGGGGGATAAGGATCACATGGATAGGCTTATTTAGGTGTTAGATACCAAACCCGAGCTGTTACAGAAAAAACAACTAGAGGGTTTTAACAATGTTAAGACATTAGGATAGAGTTTGAACGATTGCTTTATTTGAGTTATGAAATATTTCGAATTTTCGAGATTCAGTACTTCAGAATTTCCAAACTTAAAAGTTTTAGAAAATGAATTTTTGGGAAATTGCTAATTCAAAAATGCGAAAATTTCCAAGAAATCCAGAATTTTCAACAATTTCAAAAAAAAATCTGAGATTCGGAATTTCCTGTAATTATAAGTTTTTGAAAATGAGATATCAGAAAATTCTAAAAGTTTTGGAACTCAAGAAAAAGCGGATTTTCAAAATACCAAAAATTCAGGAATTTTGAATTCCAAAATCTCAAAACTTGAGTTTTCAAAATATTTCAATTCTCAAAATTCGAAAATAAAACTTTTTGAATTCGAAACCAATAAGTTTCCAAAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACGTAGTTTAGTGGTGTTGA</pcr_primer_p1>
		<pcr_primer_p2>GTTTGGAAATTCTGAAGTACTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAACGTAGTTTAGTGGTGTTGAAAATTGAGTCATATAAATTGAGAATTTGGGGTATAGGAAGGGAGGGGGATAAGGATCACATGGATAGGCTTATTTAGGTGTTAGATACCAAACCCGAGCTGTTACAGAAAAAACAACTAGAGGGTTTTAACAATGTTAAGACATTAGGATAGAGTTTGAACGATTGCTTTATTTGAGTTATGAAATATTTCGAATTTTCGAGATTCAGTACTTCAGAATTTCCAAAC</canonical_amplicon>
		<polymorphic_amplicon>AAAACGTAGTTTAGTGGTGTTGAAAATTGAGTCATATAAATTGAGAATTTGGGGTATAGGAAGGRAGGGGGATAAGGATCACATGGATAGGCTTATTTAGGTGTTAGATACCAAACCCGAGCTGTTACAGAAAAAACAACTAGAGGGTTTTAACAATGTTAAGACATTAGGATAGAGTTTGAACGATTGCTTTATTTGAGTTATGAAATATTTCGAATTTTCGAGATTCAGTACTTCAGAATTTCCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11516</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>323469</contig_pos>
        <strand>+</strand>
        <context>TTTCGAAAAA[C/T]TTGATAGAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGTTTTTTTTCGTCAGCTAGTCAAGTCTATGAAATTACTTTTCGAAAAA</left_flank>
        <right_flank>TTGATAGAAGGAAGTTGGATATATAAAAGGTTGGGAAAATAGTTTCATTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATTTCTTTATCTGATTTGCGTGCATTATGGGAATGAACTTTTGAAGCTCTCACACTTAAAAATAAGTTCATTGCTCATTTTGTGGAGGAAAAAAGAAAGAAAAAAAATGAAAGAAGGACCAGTGTTCTTGGAAATAAAGTGAGCAAAAATGACGGGAACTCATCTAGAGACCATATTTTTGCAATTTTTAATTTTCAAACGGACTAGGAAGCAAAAAATTTATTTTTTTTATCCTCGTTTATTCAACTAGGCGTTCGTGTGCCTCTTTAGGAGTAAATCCGTCTATGTCTCTATGACTAAGGAAAACATGACGAGCTTGAAAAAATAAAGTTTTGCAAAATGCGGCGTGTGAGGCTATAAACATGTGACTCATCATAACCGAAAAGCATTTTTGGGCGTACCTATGTTGTTCCATTAGGCTCCGAAGGACCGCTCGTTTTGTTATTCTGTTTTTTTTCGTCAGCTAGTCAAGTCTATGAAATTACTTTTCGAAAAATTTGATAGAAGGAAGTTGGATATATAAAAGGTTGGGAAAATAGTTTCATTGTGCCGGAAATTGCTTTTTTCCCCGCACAATTGTACCATTTAACATGACACACGGGATCTAGGATCATGATGTTTTCCTATTCAAAACGTAGTTTAGTGGTGTTGAAAATTGAGTCATATAAATTGAGAATTTGGGGTATAGGAAGGGAGGGGGATAAGGATCACATGGATAGGCTTATTTAGGTGTTAGATACCAAACCCGAGCTGTTACAGAAAAAACAACTAGAGGGTTTTAACAATGTTAAGACATTAGGATAGAGTTTGAACGATTGCTTTATTTGAGTTATGAAATATTTCGAATTTTCGAGATTCAGTACTTCAGAATTTCCAAACTTAAAAGTTTTAGAAAATGAATTTTTGGGAAATTGCTAATTCAAAAATGCGAAAATTTCCAAGAAATCCAGAATTTTCAACAATTTCAAAAAAAAATCTGAGATTCGGAATTTCCTGT</canonical>
            <polymorphic>AAAATTTCTTTATCTGATTTGCGTGCATTATGGGAATGAACTTTTGAAGCTCTCACACTTAAAAATAAGTTCATTGCTCATTTTGTGGAGGAAAAAAGAAAGAAAAAAAATGAAAGAAGGACCAGTGTTCTTGGAAATAAAGTGAGCAAAAATGACGGGAACTCATCTAGAGACCATATTTTTGCAATTTTTAATTTTCAAACGGACTAGGAAGCAAAAAATTTATTTTTTTTATCCTCGTTTATTCAACTAGGCGTTCGTGTGCCTCTTTAGGAGTAAATCCGTCTATGTCTCTATGACTAAGGAAAACATGACGAGCTTGAAAAAATAAAGTTTTGCAAAATGCGGCGTGTGAGGCTATAAACATGTGACTCATCATAACCGAAAAGCATTTTTGGGCGTACCTATGTTGTTCCATTAGGCTCCGAAGGACCGCTCGTTTTGTTATTCTGTTTTTTTTCGTCAGCTAGTCAAGTCTATGAAATTACTTTTCGAAAAAYTTGATAGAAGGAAGTTGGATATATAAAAGGTTGGGAAAATAGTTTCATTGTGCCGGAAATTGCTTTTTTCCCCGCACAATTGTACCATTTAACATGACACACGGGATCTAGGATCATGATGTTTTCCTATTCAAAACGTAGTTTAGTGGTGTTGAAAATTGAGTCATATAAATTGAGAATTTGGGGTATAGGAAGGGAGGGGGATAAGGATCACATGGATAGGCTTATTTAGGTGTTAGATACCAAACCCGAGCTGTTACAGAAAAAACAACTAGAGGGTTTTAACAATGTTAAGACATTAGGATAGAGTTTGAACGATTGCTTTATTTGAGTTATGAAATATTTCGAATTTTCGAGATTCAGTACTTCAGAATTTCCAAACTTAAAAGTTTTAGAAAATGAATTTTTGGGAAATTGCTAATTCAAAAATGCGAAAATTTCCAAGAAATCCAGAATTTTCAACAATTTCAAAAAAAAATCTGAGATTCGGAATTTCCTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>278 217 180 170 37 34 30 24 18 10 2</canonical_bands>
                <polymorphic_bands>458 217 170 37 34 30 24 18 10 2</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>263 183 170 79 60 30 27 27 24 20 18 16 15 14 11 10 10 7 7 7 2</canonical_bands>
                <polymorphic_bands>263 183 170 79 75 30 27 27 24 20 18 16 14 11 10 10 7 7 7 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTCGTTTTGTTATTCTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>CCCAAATTCTCAATTTATATGAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCTCGTTTTGTTATTCTGTTTTTTTTCGTCAGCTAGTCAAGTCTATGAAATTACTTTTCGAAAAATTTGATAGAAGGAAGTTGGATATATAAAAGGTTGGGAAAATAGTTTCATTGTGCCGGAAATTGCTTTTTTCCCCGCACAATTGTACCATTTAACATGACACACGGGATCTAGGATCATGATGTTTTCCTATTCAAAACGTAGTTTAGTGGTGTTGAAAATTGAGTCATATAAATTGAGAATTTGGG</canonical_amplicon>
		<polymorphic_amplicon>GCTCGTTTTGTTATTCTGTTTTTTTTCGTCAGCTAGTCAAGTCTATGAAATTACTTTTCGAAAAAYTTGATAGAAGGAAGTTGGATATATAAAAGGTTGGGAAAATAGTTTCATTGTGCCGGAAATTGCTTTTTTCCCCGCACAATTGTACCATTTAACATGACACACGGGATCTAGGATCATGATGTTTTCCTATTCAAAACGTAGTTTAGTGGTGTTGAAAATTGAGTCATATAAATTGAGAATTTGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11517</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>323338</contig_pos>
        <strand>+</strand>
        <context>TATAAACATG[C/T]GACTCATCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTGAAAAAATAAAGTTTTGCAAAATGCGGCGTGTGAGGCTATAAACATG</left_flank>
        <right_flank>GACTCATCATAACCGAAAAGCATTTTTGGGCGTACCTATGTTGTTCCATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCGGTTGTTTGTTTTCAGATGGGAGAAGTCGAAAACCGCCTATCGGCTAATTGGAATCTATTGAAAATCTACTTAAAAAATTGTTGAATTCTAAAAGGGCTCCTCGGGCTAGTCTGGAAATTTTTCAGCGAAAATTTCTTTATCTGATTTGCGTGCATTATGGGAATGAACTTTTGAAGCTCTCACACTTAAAAATAAGTTCATTGCTCATTTTGTGGAGGAAAAAAGAAAGAAAAAAAATGAAAGAAGGACCAGTGTTCTTGGAAATAAAGTGAGCAAAAATGACGGGAACTCATCTAGAGACCATATTTTTGCAATTTTTAATTTTCAAACGGACTAGGAAGCAAAAAATTTATTTTTTTTATCCTCGTTTATTCAACTAGGCGTTCGTGTGCCTCTTTAGGAGTAAATCCGTCTATGTCTCTATGACTAAGGAAAACATGACGAGCTTGAAAAAATAAAGTTTTGCAAAATGCGGCGTGTGAGGCTATAAACATGTGACTCATCATAACCGAAAAGCATTTTTGGGCGTACCTATGTTGTTCCATTAGGCTCCGAAGGACCGCTCGTTTTGTTATTCTGTTTTTTTTCGTCAGCTAGTCAAGTCTATGAAATTACTTTTCGAAAAATTTGATAGAAGGAAGTTGGATATATAAAAGGTTGGGAAAATAGTTTCATTGTGCCGGAAATTGCTTTTTTCCCCGCACAATTGTACCATTTAACATGACACACGGGATCTAGGATCATGATGTTTTCCTATTCAAAACGTAGTTTAGTGGTGTTGAAAATTGAGTCATATAAATTGAGAATTTGGGGTATAGGAAGGGAGGGGGATAAGGATCACATGGATAGGCTTATTTAGGTGTTAGATACCAAACCCGAGCTGTTACAGAAAAAACAACTAGAGGGTTTTAACAATGTTAAGACATTAGGATAGAGTTTGAACGATTGCTTTATTTGAGTTATGAAATATTTCGAATTTTCGAGATTCAGTACTTC</canonical>
            <polymorphic>ACCGGTTGTTTGTTTTCAGATGGGAGAAGTCGAAAACCGCCTATCGGCTAATTGGAATCTATTGAAAATCTACTTAAAAAATTGTTGAATTCTAAAAGGGCTCCTCGGGCTAGTCTGGAAATTTTTCAGCGAAAATTTCTTTATCTGATTTGCGTGCATTATGGGAATGAACTTTTGAAGCTCTCACACTTAAAAATAAGTTCATTGCTCATTTTGTGGAGGAAAAAAGAAAGAAAAAAAATGAAAGAAGGACCAGTGTTCTTGGAAATAAAGTGAGCAAAAATGACGGGAACTCATCTAGAGACCATATTTTTGCAATTTTTAATTTTCAAACGGACTAGGAAGCAAAAAATTTATTTTTTTTATCCTCGTTTATTCAACTAGGCGTTCGTGTGCCTCTTTAGGAGTAAATCCGTCTATGTCTCTATGACTAAGGAAAACATGACGAGCTTGAAAAAATAAAGTTTTGCAAAATGCGGCGTGTGAGGCTATAAACATGYGACTCATCATAACCGAAAAGCATTTTTGGGCGTACCTATGTTGTTCCATTAGGCTCCGAAGGACCGCTCGTTTTGTTATTCTGTTTTTTTTCGTCAGCTAGTCAAGTCTATGAAATTACTTTTCGAAAAATTTGATAGAAGGAAGTTGGATATATAAAAGGTTGGGAAAATAGTTTCATTGTGCCGGAAATTGCTTTTTTCCCCGCACAATTGTACCATTTAACATGACACACGGGATCTAGGATCATGATGTTTTCCTATTCAAAACGTAGTTTAGTGGTGTTGAAAATTGAGTCATATAAATTGAGAATTTGGGGTATAGGAAGGGAGGGGGATAAGGATCACATGGATAGGCTTATTTAGGTGTTAGATACCAAACCCGAGCTGTTACAGAAAAAACAACTAGAGGGTTTTAACAATGTTAAGACATTAGGATAGAGTTTGAACGATTGCTTTATTTGAGTTATGAAATATTTCGAATTTTCGAGATTCAGTACTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>182 156 134 118 88 62 47 40 30 30 24 23 22 17 16 3 2 2 2 2</canonical_bands>
                <polymorphic_bands>198 156 134 118 88 62 47 40 30 30 24 23 22 17 3 2 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>498 388 114</canonical_bands>
                <polymorphic_bands>886 114</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCTATGACTAAGGAAAACATGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCCCAACCTTTTATATATCC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTCTATGACTAAGGAAAACATGACGAGCTTGAAAAAATAAAGTTTTGCAAAATGCGGCGTGTGAGGCTATAAACATGTGACTCATCATAACCGAAAAGCATTTTTGGGCGTACCTATGTTGTTCCATTAGGCTCCGAAGGACCGCTCGTTTTGTTATTCTGTTTTTTTTCGTCAGCTAGTCAAGTCTATGAAATTACTTTTCGAAAAATTTGATAGAAGGAAGTTGGATATATAAAAGGTTGGGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTCTATGACTAAGGAAAACATGACGAGCTTGAAAAAATAAAGTTTTGCAAAATGCGGCGTGTGAGGCTATAAACATGYGACTCATCATAACCGAAAAGCATTTTTGGGCGTACCTATGTTGTTCCATTAGGCTCCGAAGGACCGCTCGTTTTGTTATTCTGTTTTTTTTCGTCAGCTAGTCAAGTCTATGAAATTACTTTTCGAAAAATTTGATAGAAGGAAGTTGGATATATAAAAGGTTGGGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11518</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>327803</contig_pos>
        <strand>+</strand>
        <context>TCTAGTATTA[C/G]ATTAAAACAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGTATCGGGAAAAAATGCGTAATTTCCCAGTTTTTCGAATTCTAGTATTA</left_flank>
        <right_flank>ATTAAAACATGAGAACTTTGTGTTTATTGAATTTGCTTTTAGCTTAATGC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCGAACGAAATGATGTCATTGGAGATGATTCATTTCATAAAACTCATAAATTTCTTGTCTAGTGCATTTATCGCTCATTTTATGAGTTCTTATGGTATACGGTACCGCAGACCGCTTTAATTGTAGTCATAAAACGTTCAGTTCAAGACTCTGAGAATTCGGTCATTTTGAATTTTAGTATTCTCTCGGTTCTGTTGACTCATCAAAACTGGTTTTGTCCATTTAATTAGGCCAGACAAAAGTAATGGGTACAAGAGTAATGGGCCCATTATGCGTGTAATTTCATTACTGTTTTCAGATTTTTGAAAACATCGAAATGAGTAATTTTTGATTTCTTAAATTTCCTTCAGAAAAAAGGAAGTTTCACATTTCGTGTAACATTAAAAATCCCAATTAAGATATTTTTGTTTGCTGAAGAATTTGGAATTCTTGATTTTAACAATAGTACTGTATCGGGAAAAAATGCGTAATTTCCCAGTTTTTCGAATTCTAGTATTACATTAAAACATGAGAACTTTGTGTTTATTGAATTTGCTTTTAGCTTAATGCAAAACCTGTAATAAAGGAGCCTTTCAAATGTCAATTTTGAACTCGATTATCTCGATTCTTGTGAAAGATATCAGAAAGCTGTCAACTGATAATTTGTTTATCGTGATATCACTAATATTTCATCAGGGTACACATTTTTGATATCTTTCACAGAAATCGAAATAATCGAGCTCAAGGTTCACGGTTCACAGAGGGAGTACGGTATGCCTCACGGTAAAAATTCTGAACGTTCTGAATAATAATCTTCTTAATTTCCCTAGACTCGCAAAAAAAATTCATACAGATATGAAAGTTTTTAAAACAATGCAATTCAATCCAAATAATCGAAGGTCCAAATAAATGTCGAAAAAATTGGAGTTGTAGTGAGAGCGCTGGCTTGCATAGTAGATACTCGAAAACAGATACTCGAAAAAATAAACGCTAAGAATATAGAAAAAAAGGAAAAAATAA</canonical>
            <polymorphic>GTCGAACGAAATGATGTCATTGGAGATGATTCATTTCATAAAACTCATAAATTTCTTGTCTAGTGCATTTATCGCTCATTTTATGAGTTCTTATGGTATACGGTACCGCAGACCGCTTTAATTGTAGTCATAAAACGTTCAGTTCAAGACTCTGAGAATTCGGTCATTTTGAATTTTAGTATTCTCTCGGTTCTGTTGACTCATCAAAACTGGTTTTGTCCATTTAATTAGGCCAGACAAAAGTAATGGGTACAAGAGTAATGGGCCCATTATGCGTGTAATTTCATTACTGTTTTCAGATTTTTGAAAACATCGAAATGAGTAATTTTTGATTTCTTAAATTTCCTTCAGAAAAAAGGAAGTTTCACATTTCGTGTAACATTAAAAATCCCAATTAAGATATTTTTGTTTGCTGAAGAATTTGGAATTCTTGATTTTAACAATAGTACTGTATCGGGAAAAAATGCGTAATTTCCCAGTTTTTCGAATTCTAGTATTASATTAAAACATGAGAACTTTGTGTTTATTGAATTTGCTTTTAGCTTAATGCAAAACCTGTAATAAAGGAGCCTTTCAAATGTCAATTTTGAACTCGATTATCTCGATTCTTGTGAAAGATATCAGAAAGCTGTCAACTGATAATTTGTTTATCGTGATATCACTAATATTTCATCAGGGTACACATTTTTGATATCTTTCACAGAAATCGAAATAATCGAGCTCAAGGTTCACGGTTCACAGAGGGAGTACGGTATGCCTCACGGTAAAAATTCTGAACGTTCTGAATAATAATCTTCTTAATTTCCCTAGACTCGCAAAAAAAATTCATACAGATATGAAAGTTTTTAAAACAATGCAATTCAATCCAAATAATCGAAGGTCCAAATAAATGTCGAAAAAATTGGAGTTGTAGTGAGAGCGCTGGCTTGCATAGTAGATACTCGAAAACAGATACTCGAAAAAATAAACGCTAAGAATATAGAAAAAAAGGAAAAAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATAGTACTGTATCGGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATACCGTACTCCCTCTGTGA</pcr_primer_p2>
		<pcr_amplicon_size>315</pcr_amplicon_size>
		<canonical_amplicon>CAATAGTACTGTATCGGGAAAAAATGCGTAATTTCCCAGTTTTTCGAATTCTAGTATTACATTAAAACATGAGAACTTTGTGTTTATTGAATTTGCTTTTAGCTTAATGCAAAACCTGTAATAAAGGAGCCTTTCAAATGTCAATTTTGAACTCGATTATCTCGATTCTTGTGAAAGATATCAGAAAGCTGTCAACTGATAATTTGTTTATCGTGATATCACTAATATTTCATCAGGGTACACATTTTTGATATCTTTCACAGAAATCGAAATAATCGAGCTCAAGGTTCACGGTTCACAGAGGGAGTACGGTAT</canonical_amplicon>
		<polymorphic_amplicon>CAATAGTACTGTATCGGGAAAAAATGCGTAATTTCCCAGTTTTTCGAATTCTAGTATTASATTAAAACATGAGAACTTTGTGTTTATTGAATTTGCTTTTAGCTTAATGCAAAACCTGTAATAAAGGAGCCTTTCAAATGTCAATTTTGAACTCGATTATCTCGATTCTTGTGAAAGATATCAGAAAGCTGTCAACTGATAATTTGTTTATCGTGATATCACTAATATTTCATCAGGGTACACATTTTTGATATCTTTCACAGAAATCGAAATAATCGAGCTCAAGGTTCACGGTTCACAGAGGGAGTACGGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11519</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>327816</contig_pos>
        <strand>+</strand>
        <context>TAAAACATGA[A/G]AACTTTGTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGCGTAATTTCCCAGTTTTTCGAATTCTAGTATTACATTAAAACATGA</left_flank>
        <right_flank>AACTTTGTGTTTATTGAATTTGCTTTTAGCTTAATGCAAAACCTGTAATA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTCATTGGAGATGATTCATTTCATAAAACTCATAAATTTCTTGTCTAGTGCATTTATCGCTCATTTTATGAGTTCTTATGGTATACGGTACCGCAGACCGCTTTAATTGTAGTCATAAAACGTTCAGTTCAAGACTCTGAGAATTCGGTCATTTTGAATTTTAGTATTCTCTCGGTTCTGTTGACTCATCAAAACTGGTTTTGTCCATTTAATTAGGCCAGACAAAAGTAATGGGTACAAGAGTAATGGGCCCATTATGCGTGTAATTTCATTACTGTTTTCAGATTTTTGAAAACATCGAAATGAGTAATTTTTGATTTCTTAAATTTCCTTCAGAAAAAAGGAAGTTTCACATTTCGTGTAACATTAAAAATCCCAATTAAGATATTTTTGTTTGCTGAAGAATTTGGAATTCTTGATTTTAACAATAGTACTGTATCGGGAAAAAATGCGTAATTTCCCAGTTTTTCGAATTCTAGTATTACATTAAAACATGAGAACTTTGTGTTTATTGAATTTGCTTTTAGCTTAATGCAAAACCTGTAATAAAGGAGCCTTTCAAATGTCAATTTTGAACTCGATTATCTCGATTCTTGTGAAAGATATCAGAAAGCTGTCAACTGATAATTTGTTTATCGTGATATCACTAATATTTCATCAGGGTACACATTTTTGATATCTTTCACAGAAATCGAAATAATCGAGCTCAAGGTTCACGGTTCACAGAGGGAGTACGGTATGCCTCACGGTAAAAATTCTGAACGTTCTGAATAATAATCTTCTTAATTTCCCTAGACTCGCAAAAAAAATTCATACAGATATGAAAGTTTTTAAAACAATGCAATTCAATCCAAATAATCGAAGGTCCAAATAAATGTCGAAAAAATTGGAGTTGTAGTGAGAGCGCTGGCTTGCATAGTAGATACTCGAAAACAGATACTCGAAAAAATAAACGCTAAGAATATAGAAAAAAAGGAAAAAATAATTTAATTAGTTGC</canonical>
            <polymorphic>ATGTCATTGGAGATGATTCATTTCATAAAACTCATAAATTTCTTGTCTAGTGCATTTATCGCTCATTTTATGAGTTCTTATGGTATACGGTACCGCAGACCGCTTTAATTGTAGTCATAAAACGTTCAGTTCAAGACTCTGAGAATTCGGTCATTTTGAATTTTAGTATTCTCTCGGTTCTGTTGACTCATCAAAACTGGTTTTGTCCATTTAATTAGGCCAGACAAAAGTAATGGGTACAAGAGTAATGGGCCCATTATGCGTGTAATTTCATTACTGTTTTCAGATTTTTGAAAACATCGAAATGAGTAATTTTTGATTTCTTAAATTTCCTTCAGAAAAAAGGAAGTTTCACATTTCGTGTAACATTAAAAATCCCAATTAAGATATTTTTGTTTGCTGAAGAATTTGGAATTCTTGATTTTAACAATAGTACTGTATCGGGAAAAAATGCGTAATTTCCCAGTTTTTCGAATTCTAGTATTACATTAAAACATGARAACTTTGTGTTTATTGAATTTGCTTTTAGCTTAATGCAAAACCTGTAATAAAGGAGCCTTTCAAATGTCAATTTTGAACTCGATTATCTCGATTCTTGTGAAAGATATCAGAAAGCTGTCAACTGATAATTTGTTTATCGTGATATCACTAATATTTCATCAGGGTACACATTTTTGATATCTTTCACAGAAATCGAAATAATCGAGCTCAAGGTTCACGGTTCACAGAGGGAGTACGGTATGCCTCACGGTAAAAATTCTGAACGTTCTGAATAATAATCTTCTTAATTTCCCTAGACTCGCAAAAAAAATTCATACAGATATGAAAGTTTTTAAAACAATGCAATTCAATCCAAATAATCGAAGGTCCAAATAAATGTCGAAAAAATTGGAGTTGTAGTGAGAGCGCTGGCTTGCATAGTAGATACTCGAAAACAGATACTCGAAAAAATAAACGCTAAGAATATAGAAAAAAAGGAAAAAATAATTTAATTAGTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGCGTAATTTCCCAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATACCGTACTCCCTCTGTGA</pcr_primer_p2>
		<pcr_amplicon_size>292</pcr_amplicon_size>
		<canonical_amplicon>ATGCGTAATTTCCCAGTTTTTCGAATTCTAGTATTACATTAAAACATGAGAACTTTGTGTTTATTGAATTTGCTTTTAGCTTAATGCAAAACCTGTAATAAAGGAGCCTTTCAAATGTCAATTTTGAACTCGATTATCTCGATTCTTGTGAAAGATATCAGAAAGCTGTCAACTGATAATTTGTTTATCGTGATATCACTAATATTTCATCAGGGTACACATTTTTGATATCTTTCACAGAAATCGAAATAATCGAGCTCAAGGTTCACGGTTCACAGAGGGAGTACGGTAT</canonical_amplicon>
		<polymorphic_amplicon>ATGCGTAATTTCCCAGTTTTTCGAATTCTAGTATTACATTAAAACATGARAACTTTGTGTTTATTGAATTTGCTTTTAGCTTAATGCAAAACCTGTAATAAAGGAGCCTTTCAAATGTCAATTTTGAACTCGATTATCTCGATTCTTGTGAAAGATATCAGAAAGCTGTCAACTGATAATTTGTTTATCGTGATATCACTAATATTTCATCAGGGTACACATTTTTGATATCTTTCACAGAAATCGAAATAATCGAGCTCAAGGTTCACGGTTCACAGAGGGAGTACGGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11520</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>332236</contig_pos>
        <strand>+</strand>
        <context>CGTAGTGACT[A/G]AAAAGAAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAAAATTTTGGTTATTTGACTCAATGACCACAATTTATCGTAGTGACT</left_flank>
        <right_flank>AAAAGAAAACATCAGAAATGGTTGTGTGCTGGTGTTAGCCGGATGGTTCA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGCATTTTCAAAGTGATCGGAAACTTGACAACCGAGCCCTGGAAAAGGCCGAAAAAAAACTGAAAATTATGTTTTTAGATATCATATCAATCGGTACTGTATTCAGAACGTAGCTATTTGGAAAAAAAGTTCTGATTGCGCCTACGCGGGTCCCTAAGATCTAAATGAATATTGAATTGTACTTCTGAGAAATGGGTAAAGAGAAGTGCGCATTTTGTATTCTTCCTCAAAGAGTGCTCCAGCGAAAAATAGAGCATAGAAAAGGACGGCGGGAATGATGTGCAATGGTCGAGAAACGAGCCGCGCTAATTTGATTGGCAAATTTGATAGGAACCAAGAGACACATACATTTTTTTTCGAAAAGAACGAGAGAGAAAGGAAAGAAGAAGGCACCTTATATTTTTATGATGTTGTTTAGATCTGTTGAAAAATAATAAAAAATAGATATGAAAAATTTTGGTTATTTGACTCAATGACCACAATTTATCGTAGTGACTAAAAAGAAAACATCAGAAATGGTTGTGTGCTGGTGTTAGCCGGATGGTTCAACAAGCCACCGGAAAACAAAAGAGTGCTTCAGATTAAAGAGCATCAGTTAATTTTTTTTCTAACTGGATTTAAAGGAAGTATGATTTTCAGGATTCGTCACTTGGCCATTCTTCCCAGGGTGGTCTGTTTTTAAGCTTCCTTTTGGCTTTCCGCCCTCTCATCCTATTTCATCTCATCAAGAAATCCGTTCAGCAGTCTAATATATTGGTATAATGAAAAAAGAAGAGGAAGAAGGAAATAAAACGCGTCGAAAAAAGAAAGATCAAGAATCTAAGGTGTTTTGTCTAAGCCTGGGAGCCTCTTGAACATTATTGTTTCTTTCAAAATGGATGAGAACGCATGAGATGAGAAGAACTGGTGTAAATATGACGATAGGTTTTGCTCGAGCAAACTTTTCCTATCTCTTCCTACTTTTTACTCCTTTCTGCGAGGATCGCATAAACAAAACT</canonical>
            <polymorphic>CTAGCATTTTCAAAGTGATCGGAAACTTGACAACCGAGCCCTGGAAAAGGCCGAAAAAAAACTGAAAATTATGTTTTTAGATATCATATCAATCGGTACTGTATTCAGAACGTAGCTATTTGGAAAAAAAGTTCTGATTGCGCCTACGCGGGTCCCTAAGATCTAAATGAATATTGAATTGTACTTCTGAGAAATGGGTAAAGAGAAGTGCGCATTTTGTATTCTTCCTCAAAGAGTGCTCCAGCGAAAAATAGAGCATAGAAAAGGACGGCGGGAATGATGTGCAATGGTCGAGAAACGAGCCGCGCTAATTTGATTGGCAAATTTGATAGGAACCAAGAGACACATACATTTTTTTTCGAAAAGAACGAGAGAGAAAGGAAAGAAGAAGGCACCTTATATTTTTATGATGTTGTTTAGATCTGTTGAAAAATAATAAAAAATAGATATGAAAAATTTTGGTTATTTGACTCAATGACCACAATTTATCGTAGTGACTRAAAAGAAAACATCAGAAATGGTTGTGTGCTGGTGTTAGCCGGATGGTTCAACAAGCCACCGGAAAACAAAAGAGTGCTTCAGATTAAAGAGCATCAGTTAATTTTTTTTCTAACTGGATTTAAAGGAAGTATGATTTTCAGGATTCGTCACTTGGCCATTCTTCCCAGGGTGGTCTGTTTTTAAGCTTCCTTTTGGCTTTCCGCCCTCTCATCCTATTTCATCTCATCAAGAAATCCGTTCAGCAGTCTAATATATTGGTATAATGAAAAAAGAAGAGGAAGAAGGAAATAAAACGCGTCGAAAAAAGAAAGATCAAGAATCTAAGGTGTTTTGTCTAAGCCTGGGAGCCTCTTGAACATTATTGTTTCTTTCAAAATGGATGAGAACGCATGAGATGAGAAGAACTGGTGTAAATATGACGATAGGTTTTGCTCGAGCAAACTTTTCCTATCTCTTCCTACTTTTTACTCCTTTCTGCGAGGATCGCATAAACAAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATGTTGTTTAGATCTGTTGAA</pcr_primer_p1>
		<pcr_primer_p2>GACGAATCCTGAAAATCATACT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TGATGTTGTTTAGATCTGTTGAAAAATAATAAAAAATAGATATGAAAAATTTTGGTTATTTGACTCAATGACCACAATTTATCGTAGTGACTAAAAAGAAAACATCAGAAATGGTTGTGTGCTGGTGTTAGCCGGATGGTTCAACAAGCCACCGGAAAACAAAAGAGTGCTTCAGATTAAAGAGCATCAGTTAATTTTTTTTCTAACTGGATTTAAAGGAAGTATGATTTTCAGGATTCGTC</canonical_amplicon>
		<polymorphic_amplicon>TGATGTTGTTTAGATCTGTTGAAAAATAATAAAAAATAGATATGAAAAATTTTGGTTATTTGACTCAATGACCACAATTTATCGTAGTGACTRAAAAGAAAACATCAGAAATGGTTGTGTGCTGGTGTTAGCCGGATGGTTCAACAAGCCACCGGAAAACAAAAGAGTGCTTCAGATTAAAGAGCATCAGTTAATTTTTTTTCTAACTGGATTTAAAGGAAGTATGATTTTCAGGATTCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11521</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>332133</contig_pos>
        <strand></strand>
        <context>AGAAGGCACC[T/C]TATATTTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATACATTTTTTTTCGAAAAGAACGAGAGAGAAAGGAAAGAAGAAGGCACC</left_flank>
        <right_flank>TATATTTTTATGATGTTGTTTAGATCTGTTGAAAAATAATAAAAAATAGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAATGGTGTCTTTCAGTATTCGGGAAAAAGCTAAAAATTTAGGAATTCTCAAAAAATTCTGTAAATACAAAGTTTTCAATCCAGATCTATTTTACACCCTCTAGCATTTTCAAAGTGATCGGAAACTTGACAACCGAGCCCTGGAAAAGGCCGAAAAAAAACTGAAAATTATGTTTTTAGATATCATATCAATCGGTACTGTATTCAGAACGTAGCTATTTGGAAAAAAAGTTCTGATTGCGCCTACGCGGGTCCCTAAGATCTAAATGAATATTGAATTGTACTTCTGAGAAATGGGTAAAGAGAAGTGCGCATTTTGTATTCTTCCTCAAAGAGTGCTCCAGCGAAAAATAGAGCATAGAAAAGGACGGCGGGAATGATGTGCAATGGTCGAGAAACGAGCCGCGCTAATTTGATTGGCAAATTTGATAGGAACCAAGAGACACATACATTTTTTTTCGAAAAGAACGAGAGAGAAAGGAAAGAAGAAGGCACCTTATATTTTTATGATGTTGTTTAGATCTGTTGAAAAATAATAAAAAATAGATATGAAAAATTTTGGTTATTTGACTCAATGACCACAATTTATCGTAGTGACTAAAAAGAAAACATCAGAAATGGTTGTGTGCTGGTGTTAGCCGGATGGTTCAACAAGCCACCGGAAAACAAAAGAGTGCTTCAGATTAAAGAGCATCAGTTAATTTTTTTTCTAACTGGATTTAAAGGAAGTATGATTTTCAGGATTCGTCACTTGGCCATTCTTCCCAGGGTGGTCTGTTTTTAAGCTTCCTTTTGGCTTTCCGCCCTCTCATCCTATTTCATCTCATCAAGAAATCCGTTCAGCAGTCTAATATATTGGTATAATGAAAAAAGAAGAGGAAGAAGGAAATAAAACGCGTCGAAAAAAGAAAGATCAAGAATCTAAGGTGTTTTGTCTAAGCCTGGGAGCCTCTTGAACATTATTGTTTCTTTCAAAATGGATGAGAACGCATGAGAT</canonical>
            <polymorphic>AAGAAATGGTGTCTTTCAGTATTCGGGAAAAAGCTAAAAATTTAGGAATTCTCAAAAAATTCTGTAAATACAAAGTTTTCAATCCAGATCTATTTTACACCCTCTAGCATTTTCAAAGTGATCGGAAACTTGACAACCGAGCCCTGGAAAAGGCCGAAAAAAAACTGAAAATTATGTTTTTAGATATCATATCAATCGGTACTGTATTCAGAACGTAGCTATTTGGAAAAAAAGTTCTGATTGCGCCTACGCGGGTCCCTAAGATCTAAATGAATATTGAATTGTACTTCTGAGAAATGGGTAAAGAGAAGTGCGCATTTTGTATTCTTCCTCAAAGAGTGCTCCAGCGAAAAATAGAGCATAGAAAAGGACGGCGGGAATGATGTGCAATGGTCGAGAAACGAGCCGCGCTAATTTGATTGGCAAATTTGATAGGAACCAAGAGACACATACATTTTTTTTCGAAAAGAACGAGAGAGAAAGGAAAGAAGAAGGCACCYTATATTTTTATGATGTTGTTTAGATCTGTTGAAAAATAATAAAAAATAGATATGAAAAATTTTGGTTATTTGACTCAATGACCACAATTTATCGTAGTGACTAAAAAGAAAACATCAGAAATGGTTGTGTGCTGGTGTTAGCCGGATGGTTCAACAAGCCACCGGAAAACAAAAGAGTGCTTCAGATTAAAGAGCATCAGTTAATTTTTTTTCTAACTGGATTTAAAGGAAGTATGATTTTCAGGATTCGTCACTTGGCCATTCTTCCCAGGGTGGTCTGTTTTTAAGCTTCCTTTTGGCTTTCCGCCCTCTCATCCTATTTCATCTCATCAAGAAATCCGTTCAGCAGTCTAATATATTGGTATAATGAAAAAAGAAGAGGAAGAAGGAAATAAAACGCGTCGAAAAAAGAAAGATCAAGAATCTAAGGTGTTTTGTCTAAGCCTGGGAGCCTCTTGAACATTATTGTTTCTTTCAAAATGGATGAGAACGCATGAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAATAGAGCATAGAAAAGGAC</pcr_primer_p1>
		<pcr_primer_p2>ACTACGATAAATTGTGGTCATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAAATAGAGCATAGAAAAGGACGGCGGGAATGATGTGCAATGGTCGAGAAACGAGCCGCGCTAATTTGATTGGCAAATTTGATAGGAACCAAGAGACACATACATTTTTTTTCGAAAAGAACGAGAGAGAAAGGAAAGAAGAAGGCACCTTATATTTTTATGATGTTGTTTAGATCTGTTGAAAAATAATAAAAAATAGATATGAAAAATTTTGGTTATTTGACTCAATGACCACAATTTATCGTAGT</canonical_amplicon>
		<polymorphic_amplicon>GAAAAATAGAGCATAGAAAAGGACGGCGGGAATGATGTGCAATGGTCGAGAAACGAGCCGCGCTAATTTGATTGGCAAATTTGATAGGAACCAAGAGACACATACATTTTTTTTCGAAAAGAACGAGAGAGAAAGGAAAGAAGAAGGCACCYTATATTTTTATGATGTTGTTTAGATCTGTTGAAAAATAATAAAAAATAGATATGAAAAATTTTGGTTATTTGACTCAATGACCACAATTTATCGTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11522</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>332011</contig_pos>
        <strand>+</strand>
        <context>AGGACGGCGG[G/T]AATGATGTGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCCTCAAAGAGTGCTCCAGCGAAAAATAGAGCATAGAAAAGGACGGCGG</left_flank>
        <right_flank>AATGATGTGCAATGGTCGAGAAACGAGCCGCGCTAATTTGATTGGCAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAATTTTCAGCCACTTTTAAGAGTCTGTCTGAAGCTCGATCCTCAGATTTACAATGACTATGAAACTTTTCAAAAGTCTAAAGCAAGCCTAGATAAAAAATGTTTTGTACCAATAACGTGGAAGAAATGGTGTCTTTCAGTATTCGGGAAAAAGCTAAAAATTTAGGAATTCTCAAAAAATTCTGTAAATACAAAGTTTTCAATCCAGATCTATTTTACACCCTCTAGCATTTTCAAAGTGATCGGAAACTTGACAACCGAGCCCTGGAAAAGGCCGAAAAAAAACTGAAAATTATGTTTTTAGATATCATATCAATCGGTACTGTATTCAGAACGTAGCTATTTGGAAAAAAAGTTCTGATTGCGCCTACGCGGGTCCCTAAGATCTAAATGAATATTGAATTGTACTTCTGAGAAATGGGTAAAGAGAAGTGCGCATTTTGTATTCTTCCTCAAAGAGTGCTCCAGCGAAAAATAGAGCATAGAAAAGGACGGCGGGAATGATGTGCAATGGTCGAGAAACGAGCCGCGCTAATTTGATTGGCAAATTTGATAGGAACCAAGAGACACATACATTTTTTTTCGAAAAGAACGAGAGAGAAAGGAAAGAAGAAGGCACCTTATATTTTTATGATGTTGTTTAGATCTGTTGAAAAATAATAAAAAATAGATATGAAAAATTTTGGTTATTTGACTCAATGACCACAATTTATCGTAGTGACTAAAAAGAAAACATCAGAAATGGTTGTGTGCTGGTGTTAGCCGGATGGTTCAACAAGCCACCGGAAAACAAAAGAGTGCTTCAGATTAAAGAGCATCAGTTAATTTTTTTTCTAACTGGATTTAAAGGAAGTATGATTTTCAGGATTCGTCACTTGGCCATTCTTCCCAGGGTGGTCTGTTTTTAAGCTTCCTTTTGGCTTTCCGCCCTCTCATCCTATTTCATCTCATCAAGAAATCCGTTCAGCAGTCTAATATATTGGTATAATGAAAAAAGAA</canonical>
            <polymorphic>TGAATTTTCAGCCACTTTTAAGAGTCTGTCTGAAGCTCGATCCTCAGATTTACAATGACTATGAAACTTTTCAAAAGTCTAAAGCAAGCCTAGATAAAAAATGTTTTGTACCAATAACGTGGAAGAAATGGTGTCTTTCAGTATTCGGGAAAAAGCTAAAAATTTAGGAATTCTCAAAAAATTCTGTAAATACAAAGTTTTCAATCCAGATCTATTTTACACCCTCTAGCATTTTCAAAGTGATCGGAAACTTGACAACCGAGCCCTGGAAAAGGCCGAAAAAAAACTGAAAATTATGTTTTTAGATATCATATCAATCGGTACTGTATTCAGAACGTAGCTATTTGGAAAAAAAGTTCTGATTGCGCCTACGCGGGTCCCTAAGATCTAAATGAATATTGAATTGTACTTCTGAGAAATGGGTAAAGAGAAGTGCGCATTTTGTATTCTTCCTCAAAGAGTGCTCCAGCGAAAAATAGAGCATAGAAAAGGACGGCGGKAATGATGTGCAATGGTCGAGAAACGAGCCGCGCTAATTTGATTGGCAAATTTGATAGGAACCAAGAGACACATACATTTTTTTTCGAAAAGAACGAGAGAGAAAGGAAAGAAGAAGGCACCTTATATTTTTATGATGTTGTTTAGATCTGTTGAAAAATAATAAAAAATAGATATGAAAAATTTTGGTTATTTGACTCAATGACCACAATTTATCGTAGTGACTAAAAAGAAAACATCAGAAATGGTTGTGTGCTGGTGTTAGCCGGATGGTTCAACAAGCCACCGGAAAACAAAAGAGTGCTTCAGATTAAAGAGCATCAGTTAATTTTTTTTCTAACTGGATTTAAAGGAAGTATGATTTTCAGGATTCGTCACTTGGCCATTCTTCCCAGGGTGGTCTGTTTTTAAGCTTCCTTTTGGCTTTCCGCCCTCTCATCCTATTTCATCTCATCAAGAAATCCGTTCAGCAGTCTAATATATTGGTATAATGAAAAAAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTTCTGAGAAATGGGTAAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTCAACAGATCTAAACAACATCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TACTTCTGAGAAATGGGTAAAGAGAAGTGCGCATTTTGTATTCTTCCTCAAAGAGTGCTCCAGCGAAAAATAGAGCATAGAAAAGGACGGCGGGAATGATGTGCAATGGTCGAGAAACGAGCCGCGCTAATTTGATTGGCAAATTTGATAGGAACCAAGAGACACATACATTTTTTTTCGAAAAGAACGAGAGAGAAAGGAAAGAAGAAGGCACCTTATATTTTTATGATGTTGTTTAGATCTGTTGAA</canonical_amplicon>
		<polymorphic_amplicon>TACTTCTGAGAAATGGGTAAAGAGAAGTGCGCATTTTGTATTCTTCCTCAAAGAGTGCTCCAGCGAAAAATAGAGCATAGAAAAGGACGGCGGKAATGATGTGCAATGGTCGAGAAACGAGCCGCGCTAATTTGATTGGCAAATTTGATAGGAACCAAGAGACACATACATTTTTTTTCGAAAAGAACGAGAGAGAAAGGAAAGAAGAAGGCACCTTATATTTTTATGATGTTGTTTAGATCTGTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11529</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>348136</contig_pos>
        <strand>+</strand>
        <context>TACTATTTAT[A/G]ATGGTACTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAACTCGATCAGCAGCTCTGTTATGAATGGAGCTAACTATACTATTTAT</left_flank>
        <right_flank>ATGGTACTGTTAAGGATAGTAATGGTCTTGGAGCAAGCGCATTTGAACTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTGCCAAAGTCCGATGTGGTGGTTCGACACAGACGTCATCATTATACAAGAACGAGATTTGTGCGGAGGATTATAGACGAGTCCGCAGTGGATACAGTATGCTATGATGGAGGTATAATTAAATTTCCGCGAATACTGTAATAGAATGCCGCCATAGACTTGCACTTTGAGCTCAATATCTCGGTTCCTATAAGATATCAAAAATTTGTCGACTGATAAAATATTGGTGATTCTATGAGGTAATTAATCTCAAAGCACAAGTATATGTTGACTTTATTTTAGTAAAGTGTTTACGGTACGTAAGAAAAAAACAATTTCTGCTTCCAGGAGAATGTTCATGTGCCGAAACAACTTGCAGTGTGCAATGCAACAAGTGTGATTTTGATAGTCCAAAAGTTTTGAGAGATGTGCTATCCAGTCCAGGCTACTTTGGCATCCGATTCGAGCTTAACTCGATCAGCAGCTCTGTTATGAATGGAGCTAACTATACTATTTATAATGGTACTGTTAAGGATAGTAATGGTCTTGGAGCAAGCGCATTTGAACTTTCCAGTGAGTTATACTTGAAATTTGAAATTTAAAAAAGATTTTTTCAGAGAAAGTTAGAGTGTGGCTTCGTTCTTGTAATGTTGGTTGTAACCCAGCAAAAAAGACTTTGAAGCGGGACTACTACGTTTTGGGGCACGAAGACGGCCTCAATTCAGATTCCTATGGACGGTGAAAGATTTTCAGATAGAATAAAATTATTTTAAAATTATTTCAGACAAAACTACATTCTCAATCATGCGGATCGCTTGGAAGAGAGTTCGTACGCGTGTCAAAATTTGAACTCCGCAATTACGATCAGATATTAAAGTAAAAGTATAAAATTCAAGGAACATCCAGCTACACAGACATTCGACTTATATTCTCTTCTTCTCTTCACGGGCTCTCATCTCATTTTACTATTTTTCTTTTTTATTTTTGCCACATTTTTAGCACAGGAAAACAATATGTTT</canonical>
            <polymorphic>ATGTGCCAAAGTCCGATGTGGTGGTTCGACACAGACGTCATCATTATACAAGAACGAGATTTGTGCGGAGGATTATAGACGAGTCCGCAGTGGATACAGTATGCTATGATGGAGGTATAATTAAATTTCCGCGAATACTGTAATAGAATGCCGCCATAGACTTGCACTTTGAGCTCAATATCTCGGTTCCTATAAGATATCAAAAATTTGTCGACTGATAAAATATTGGTGATTCTATGAGGTAATTAATCTCAAAGCACAAGTATATGTTGACTTTATTTTAGTAAAGTGTTTACGGTACGTAAGAAAAAAACAATTTCTGCTTCCAGGAGAATGTTCATGTGCCGAAACAACTTGCAGTGTGCAATGCAACAAGTGTGATTTTGATAGTCCAAAAGTTTTGAGAGATGTGCTATCCAGTCCAGGCTACTTTGGCATCCGATTCGAGCTTAACTCGATCAGCAGCTCTGTTATGAATGGAGCTAACTATACTATTTATRATGGTACTGTTAAGGATAGTAATGGTCTTGGAGCAAGCGCATTTGAACTTTCCAGTGAGTTATACTTGAAATTTGAAATTTAAAAAAGATTTTTTCAGAGAAAGTTAGAGTGTGGCTTCGTTCTTGTAATGTTGGTTGTAACCCAGCAAAAAAGACTTTGAAGCGGGACTACTACGTTTTGGGGCACGAAGACGGCCTCAATTCAGATTCCTATGGACGGTGAAAGATTTTCAGATAGAATAAAATTATTTTAAAATTATTTCAGACAAAACTACATTCTCAATCATGCGGATCGCTTGGAAGAGAGTTCGTACGCGTGTCAAAATTTGAACTCCGCAATTACGATCAGATATTAAAGTAAAAGTATAAAATTCAAGGAACATCCAGCTACACAGACATTCGACTTATATTCTCTTCTTCTCTTCACGGGCTCTCATCTCATTTTACTATTTTTCTTTTTTATTTTTGCCACATTTTTAGCACAGGAAAACAATATGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAAGTGTGATTTTGATAGTCC</pcr_primer_p1>
		<pcr_primer_p2>GAAGCCACACTCTAACTTTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACAAGTGTGATTTTGATAGTCCAAAAGTTTTGAGAGATGTGCTATCCAGTCCAGGCTACTTTGGCATCCGATTCGAGCTTAACTCGATCAGCAGCTCTGTTATGAATGGAGCTAACTATACTATTTATAATGGTACTGTTAAGGATAGTAATGGTCTTGGAGCAAGCGCATTTGAACTTTCCAGTGAGTTATACTTGAAATTTGAAATTTAAAAAAGATTTTTTCAGAGAAAGTTAGAGTGTGGCTTC</canonical_amplicon>
		<polymorphic_amplicon>AACAAGTGTGATTTTGATAGTCCAAAAGTTTTGAGAGATGTGCTATCCAGTCCAGGCTACTTTGGCATCCGATTCGAGCTTAACTCGATCAGCAGCTCTGTTATGAATGGAGCTAACTATACTATTTATRATGGTACTGTTAAGGATAGTAATGGTCTTGGAGCAAGCGCATTTGAACTTTCCAGTGAGTTATACTTGAAATTTGAAATTTAAAAAAGATTTTTTCAGAGAAAGTTAGAGTGTGGCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11530</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>348283</contig_pos>
        <strand>+</strand>
        <context>TGTAACCCAG[C/G]AAAAAAGACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGAGAAAGTTAGAGTGTGGCTTCGTTCTTGTAATGTTGGTTGTAACCCAG</left_flank>
        <right_flank>AAAAAAGACTTTGAAGCGGGACTACTACGTTTTGGGGCACGAAGACGGCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCCGCCATAGACTTGCACTTTGAGCTCAATATCTCGGTTCCTATAAGATATCAAAAATTTGTCGACTGATAAAATATTGGTGATTCTATGAGGTAATTAATCTCAAAGCACAAGTATATGTTGACTTTATTTTAGTAAAGTGTTTACGGTACGTAAGAAAAAAACAATTTCTGCTTCCAGGAGAATGTTCATGTGCCGAAACAACTTGCAGTGTGCAATGCAACAAGTGTGATTTTGATAGTCCAAAAGTTTTGAGAGATGTGCTATCCAGTCCAGGCTACTTTGGCATCCGATTCGAGCTTAACTCGATCAGCAGCTCTGTTATGAATGGAGCTAACTATACTATTTATAATGGTACTGTTAAGGATAGTAATGGTCTTGGAGCAAGCGCATTTGAACTTTCCAGTGAGTTATACTTGAAATTTGAAATTTAAAAAAGATTTTTTCAGAGAAAGTTAGAGTGTGGCTTCGTTCTTGTAATGTTGGTTGTAACCCAGCAAAAAAGACTTTGAAGCGGGACTACTACGTTTTGGGGCACGAAGACGGCCTCAATTCAGATTCCTATGGACGGTGAAAGATTTTCAGATAGAATAAAATTATTTTAAAATTATTTCAGACAAAACTACATTCTCAATCATGCGGATCGCTTGGAAGAGAGTTCGTACGCGTGTCAAAATTTGAACTCCGCAATTACGATCAGATATTAAAGTAAAAGTATAAAATTCAAGGAACATCCAGCTACACAGACATTCGACTTATATTCTCTTCTTCTCTTCACGGGCTCTCATCTCATTTTACTATTTTTCTTTTTTATTTTTGCCACATTTTTAGCACAGGAAAACAATATGTTTATTTCATGGATTTTTTCTTCTTGTTAATATTGATATTTCACATATAATTTAATAAATATTATACATCATAGATGTTACCAAGTTGGAATCTGTGGATTCTGGAAAAGAATGGAAGGAATAGGAATACAGAAAAAAATACGTAGTAAT</canonical>
            <polymorphic>ATGCCGCCATAGACTTGCACTTTGAGCTCAATATCTCGGTTCCTATAAGATATCAAAAATTTGTCGACTGATAAAATATTGGTGATTCTATGAGGTAATTAATCTCAAAGCACAAGTATATGTTGACTTTATTTTAGTAAAGTGTTTACGGTACGTAAGAAAAAAACAATTTCTGCTTCCAGGAGAATGTTCATGTGCCGAAACAACTTGCAGTGTGCAATGCAACAAGTGTGATTTTGATAGTCCAAAAGTTTTGAGAGATGTGCTATCCAGTCCAGGCTACTTTGGCATCCGATTCGAGCTTAACTCGATCAGCAGCTCTGTTATGAATGGAGCTAACTATACTATTTATAATGGTACTGTTAAGGATAGTAATGGTCTTGGAGCAAGCGCATTTGAACTTTCCAGTGAGTTATACTTGAAATTTGAAATTTAAAAAAGATTTTTTCAGAGAAAGTTAGAGTGTGGCTTCGTTCTTGTAATGTTGGTTGTAACCCAGSAAAAAAGACTTTGAAGCGGGACTACTACGTTTTGGGGCACGAAGACGGCCTCAATTCAGATTCCTATGGACGGTGAAAGATTTTCAGATAGAATAAAATTATTTTAAAATTATTTCAGACAAAACTACATTCTCAATCATGCGGATCGCTTGGAAGAGAGTTCGTACGCGTGTCAAAATTTGAACTCCGCAATTACGATCAGATATTAAAGTAAAAGTATAAAATTCAAGGAACATCCAGCTACACAGACATTCGACTTATATTCTCTTCTTCTCTTCACGGGCTCTCATCTCATTTTACTATTTTTCTTTTTTATTTTTGCCACATTTTTAGCACAGGAAAACAATATGTTTATTTCATGGATTTTTTCTTCTTGTTAATATTGATATTTCACATATAATTTAATAAATATTATACATCATAGATGTTACCAAGTTGGAATCTGTGGATTCTGGAAAAGAATGGAAGGAATAGGAATACAGAAAAAAATACGTAGTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTGAACTTTCCAGTGAGTTA</pcr_primer_p1>
		<pcr_primer_p2>CATGATTGAGAATGTAGTTTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATTTGAACTTTCCAGTGAGTTATACTTGAAATTTGAAATTTAAAAAAGATTTTTTCAGAGAAAGTTAGAGTGTGGCTTCGTTCTTGTAATGTTGGTTGTAACCCAGCAAAAAAGACTTTGAAGCGGGACTACTACGTTTTGGGGCACGAAGACGGCCTCAATTCAGATTCCTATGGACGGTGAAAGATTTTCAGATAGAATAAAATTATTTTAAAATTATTTCAGACAAAACTACATTCTCAATCATG</canonical_amplicon>
		<polymorphic_amplicon>CATTTGAACTTTCCAGTGAGTTATACTTGAAATTTGAAATTTAAAAAAGATTTTTTCAGAGAAAGTTAGAGTGTGGCTTCGTTCTTGTAATGTTGGTTGTAACCCAGSAAAAAAGACTTTGAAGCGGGACTACTACGTTTTGGGGCACGAAGACGGCCTCAATTCAGATTCCTATGGACGGTGAAAGATTTTCAGATAGAATAAAATTATTTTAAAATTATTTCAGACAAAACTACATTCTCAATCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11531</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>348332</contig_pos>
        <strand>+</strand>
        <context>ACGAAGACGG[C/T]CTCAATTCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCAAAAAAGACTTTGAAGCGGGACTACTACGTTTTGGGGCACGAAGACGG</left_flank>
        <right_flank>CTCAATTCAGATTCCTATGGACGGTGAAAGATTTTCAGATAGAATAAAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATCAAAAATTTGTCGACTGATAAAATATTGGTGATTCTATGAGGTAATTAATCTCAAAGCACAAGTATATGTTGACTTTATTTTAGTAAAGTGTTTACGGTACGTAAGAAAAAAACAATTTCTGCTTCCAGGAGAATGTTCATGTGCCGAAACAACTTGCAGTGTGCAATGCAACAAGTGTGATTTTGATAGTCCAAAAGTTTTGAGAGATGTGCTATCCAGTCCAGGCTACTTTGGCATCCGATTCGAGCTTAACTCGATCAGCAGCTCTGTTATGAATGGAGCTAACTATACTATTTATAATGGTACTGTTAAGGATAGTAATGGTCTTGGAGCAAGCGCATTTGAACTTTCCAGTGAGTTATACTTGAAATTTGAAATTTAAAAAAGATTTTTTCAGAGAAAGTTAGAGTGTGGCTTCGTTCTTGTAATGTTGGTTGTAACCCAGCAAAAAAGACTTTGAAGCGGGACTACTACGTTTTGGGGCACGAAGACGGCCTCAATTCAGATTCCTATGGACGGTGAAAGATTTTCAGATAGAATAAAATTATTTTAAAATTATTTCAGACAAAACTACATTCTCAATCATGCGGATCGCTTGGAAGAGAGTTCGTACGCGTGTCAAAATTTGAACTCCGCAATTACGATCAGATATTAAAGTAAAAGTATAAAATTCAAGGAACATCCAGCTACACAGACATTCGACTTATATTCTCTTCTTCTCTTCACGGGCTCTCATCTCATTTTACTATTTTTCTTTTTTATTTTTGCCACATTTTTAGCACAGGAAAACAATATGTTTATTTCATGGATTTTTTCTTCTTGTTAATATTGATATTTCACATATAATTTAATAAATATTATACATCATAGATGTTACCAAGTTGGAATCTGTGGATTCTGGAAAAGAATGGAAGGAATAGGAATACAGAAAAAAATACGTAGTAATTGAAAACCTCGTTCGCTTCAGTTTTGAACTACAATAATGAAAGAAATGG</canonical>
            <polymorphic>ATATCAAAAATTTGTCGACTGATAAAATATTGGTGATTCTATGAGGTAATTAATCTCAAAGCACAAGTATATGTTGACTTTATTTTAGTAAAGTGTTTACGGTACGTAAGAAAAAAACAATTTCTGCTTCCAGGAGAATGTTCATGTGCCGAAACAACTTGCAGTGTGCAATGCAACAAGTGTGATTTTGATAGTCCAAAAGTTTTGAGAGATGTGCTATCCAGTCCAGGCTACTTTGGCATCCGATTCGAGCTTAACTCGATCAGCAGCTCTGTTATGAATGGAGCTAACTATACTATTTATAATGGTACTGTTAAGGATAGTAATGGTCTTGGAGCAAGCGCATTTGAACTTTCCAGTGAGTTATACTTGAAATTTGAAATTTAAAAAAGATTTTTTCAGAGAAAGTTAGAGTGTGGCTTCGTTCTTGTAATGTTGGTTGTAACCCAGCAAAAAAGACTTTGAAGCGGGACTACTACGTTTTGGGGCACGAAGACGGYCTCAATTCAGATTCCTATGGACGGTGAAAGATTTTCAGATAGAATAAAATTATTTTAAAATTATTTCAGACAAAACTACATTCTCAATCATGCGGATCGCTTGGAAGAGAGTTCGTACGCGTGTCAAAATTTGAACTCCGCAATTACGATCAGATATTAAAGTAAAAGTATAAAATTCAAGGAACATCCAGCTACACAGACATTCGACTTATATTCTCTTCTTCTCTTCACGGGCTCTCATCTCATTTTACTATTTTTCTTTTTTATTTTTGCCACATTTTTAGCACAGGAAAACAATATGTTTATTTCATGGATTTTTTCTTCTTGTTAATATTGATATTTCACATATAATTTAATAAATATTATACATCATAGATGTTACCAAGTTGGAATCTGTGGATTCTGGAAAAGAATGGAAGGAATAGGAATACAGAAAAAAATACGTAGTAATTGAAAACCTCGTTCGCTTCAGTTTTGAACTACAATAATGAAAGAAATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>266 230 192 133 80 43 22 17 17</canonical_bands>
                <polymorphic_bands>272 266 230 133 43 22 17 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTTGAACTTTCCAGTGAGTTA</pcr_primer_p1>
		<pcr_primer_p2>CATGATTGAGAATGTAGTTTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATTTGAACTTTCCAGTGAGTTATACTTGAAATTTGAAATTTAAAAAAGATTTTTTCAGAGAAAGTTAGAGTGTGGCTTCGTTCTTGTAATGTTGGTTGTAACCCAGCAAAAAAGACTTTGAAGCGGGACTACTACGTTTTGGGGCACGAAGACGGCCTCAATTCAGATTCCTATGGACGGTGAAAGATTTTCAGATAGAATAAAATTATTTTAAAATTATTTCAGACAAAACTACATTCTCAATCATG</canonical_amplicon>
		<polymorphic_amplicon>CATTTGAACTTTCCAGTGAGTTATACTTGAAATTTGAAATTTAAAAAAGATTTTTTCAGAGAAAGTTAGAGTGTGGCTTCGTTCTTGTAATGTTGGTTGTAACCCAGCAAAAAAGACTTTGAAGCGGGACTACTACGTTTTGGGGCACGAAGACGGYCTCAATTCAGATTCCTATGGACGGTGAAAGATTTTCAGATAGAATAAAATTATTTTAAAATTATTTCAGACAAAACTACATTCTCAATCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11556</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>348435</contig_pos>
        <strand>+</strand>
        <context>CGGATCGCTT[G/T]GAAGAGAGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTAAAATTATTTCAGACAAAACTACATTCTCAATCATGCGGATCGCTT</left_flank>
        <right_flank>GAAGAGAGTTCGTACGCGTGTCAAAATTTGAACTCCGCAATTACGATCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGTAAGAAAAAAACAATTTCTGCTTCCAGGAGAATGTTCATGTGCCGAAACAACTTGCAGTGTGCAATGCAACAAGTGTGATTTTGATAGTCCAAAAGTTTTGAGAGATGTGCTATCCAGTCCAGGCTACTTTGGCATCCGATTCGAGCTTAACTCGATCAGCAGCTCTGTTATGAATGGAGCTAACTATACTATTTATAATGGTACTGTTAAGGATAGTAATGGTCTTGGAGCAAGCGCATTTGAACTTTCCAGTGAGTTATACTTGAAATTTGAAATTTAAAAAAGATTTTTTCAGAGAAAGTTAGAGTGTGGCTTCGTTCTTGTAATGTTGGTTGTAACCCAGCAAAAAAGACTTTGAAGCGGGACTACTACGTTTTGGGGCACGAAGACGGCCTCAATTCAGATTCCTATGGACGGTGAAAGATTTTCAGATAGAATAAAATTATTTTAAAATTATTTCAGACAAAACTACATTCTCAATCATGCGGATCGCTTGGAAGAGAGTTCGTACGCGTGTCAAAATTTGAACTCCGCAATTACGATCAGATATTAAAGTAAAAGTATAAAATTCAAGGAACATCCAGCTACACAGACATTCGACTTATATTCTCTTCTTCTCTTCACGGGCTCTCATCTCATTTTACTATTTTTCTTTTTTATTTTTGCCACATTTTTAGCACAGGAAAACAATATGTTTATTTCATGGATTTTTTCTTCTTGTTAATATTGATATTTCACATATAATTTAATAAATATTATACATCATAGATGTTACCAAGTTGGAATCTGTGGATTCTGGAAAAGAATGGAAGGAATAGGAATACAGAAAAAAATACGTAGTAATTGAAAACCTCGTTCGCTTCAGTTTTGAACTACAATAATGAAAGAAATGGGAAATGAAAGAAAAAATGTTGAAAGACTGAGAAACTTTCGAGAAATGTGAGAAATGTTTTTTCGATTGTTTGTAATGGACCCATTTTTGTGGACTGACCAAAT</canonical>
            <polymorphic>ACGTAAGAAAAAAACAATTTCTGCTTCCAGGAGAATGTTCATGTGCCGAAACAACTTGCAGTGTGCAATGCAACAAGTGTGATTTTGATAGTCCAAAAGTTTTGAGAGATGTGCTATCCAGTCCAGGCTACTTTGGCATCCGATTCGAGCTTAACTCGATCAGCAGCTCTGTTATGAATGGAGCTAACTATACTATTTATAATGGTACTGTTAAGGATAGTAATGGTCTTGGAGCAAGCGCATTTGAACTTTCCAGTGAGTTATACTTGAAATTTGAAATTTAAAAAAGATTTTTTCAGAGAAAGTTAGAGTGTGGCTTCGTTCTTGTAATGTTGGTTGTAACCCAGCAAAAAAGACTTTGAAGCGGGACTACTACGTTTTGGGGCACGAAGACGGCCTCAATTCAGATTCCTATGGACGGTGAAAGATTTTCAGATAGAATAAAATTATTTTAAAATTATTTCAGACAAAACTACATTCTCAATCATGCGGATCGCTTKGAAGAGAGTTCGTACGCGTGTCAAAATTTGAACTCCGCAATTACGATCAGATATTAAAGTAAAAGTATAAAATTCAAGGAACATCCAGCTACACAGACATTCGACTTATATTCTCTTCTTCTCTTCACGGGCTCTCATCTCATTTTACTATTTTTCTTTTTTATTTTTGCCACATTTTTAGCACAGGAAAACAATATGTTTATTTCATGGATTTTTTCTTCTTGTTAATATTGATATTTCACATATAATTTAATAAATATTATACATCATAGATGTTACCAAGTTGGAATCTGTGGATTCTGGAAAAGAATGGAAGGAATAGGAATACAGAAAAAAATACGTAGTAATTGAAAACCTCGTTCGCTTCAGTTTTGAACTACAATAATGAAAGAAATGGGAAATGAAAGAAAAAATGTTGAAAGACTGAGAAACTTTCGAGAAATGTGAGAAATGTTTTTTCGATTGTTTGTAATGGACCCATTTTTGTGGACTGACCAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTGAAGCGGGACTACTAC</pcr_primer_p1>
		<pcr_primer_p2>AATGTCTGTGTAGCTGGATGTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACTTTGAAGCGGGACTACTACGTTTTGGGGCACGAAGACGGCCTCAATTCAGATTCCTATGGACGGTGAAAGATTTTCAGATAGAATAAAATTATTTTAAAATTATTTCAGACAAAACTACATTCTCAATCATGCGGATCGCTTGGAAGAGAGTTCGTACGCGTGTCAAAATTTGAACTCCGCAATTACGATCAGATATTAAAGTAAAAGTATAAAATTCAAGGAACATCCAGCTACACAGACATT</canonical_amplicon>
		<polymorphic_amplicon>ACTTTGAAGCGGGACTACTACGTTTTGGGGCACGAAGACGGCCTCAATTCAGATTCCTATGGACGGTGAAAGATTTTCAGATAGAATAAAATTATTTTAAAATTATTTCAGACAAAACTACATTCTCAATCATGCGGATCGCTTKGAAGAGAGTTCGTACGCGTGTCAAAATTTGAACTCCGCAATTACGATCAGATATTAAAGTAAAAGTATAAAATTCAAGGAACATCCAGCTACACAGACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11557</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>350510</contig_pos>
        <strand>+</strand>
        <context>TGCTCTGTAC[G/T]GTGTGCTCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCGTACTTCAAGTGCCCAGCAAAATGAGCTGCAGCAATAATGCTCTGTAC</left_flank>
        <right_flank>GTGTGCTCATCAATGAACATGTCAATCATTCTGGTGGATCTTGGGAGGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTACCTTTTGCGACATGAGCCCAACTTTGCTATCCACCAAGTTCGCTTGAGCATTTATCATGTTGATGTATCCCTTGACCCTTTTATTTCTCATCTCCATTGTTAACGTGAACTCAGTCTCCACATTGATCGTAAGCATAGAGCCTTCTACAGTTTTCAATGGCGGCTCTGCGAAAACCTGAAAATCCAAAATTTACGTTTTCCAAATTTGAAAGCTATGTCTTTACATTTAACGATGCATTCAAATAAACCAGCGCTCTTCCTTGCTGCAGATCAATGACTGGAGGTGATAGAGTAGATGCTTCAACCGACAACGTCCGATTTGGGACCTGCTCGGCGAGCTCTGGTAGTACTGTTCCAATACACAACACGTCACAGCTAGTTTTCAAGAACGGCGACTCGATCTTTGTTCTAAAAAGAAACTTTCGAATACTAGCTAAAAAAGACGGCGTACTTCAAGTGCCCAGCAAAATGAGCTGCAGCAATAATGCTCTGTACGGTGTGCTCATCAATGAACATGTCAATCATTCTGGTGGATCTTGGGAGGGCTTCTGAACAAAATTAGGTTTAAATTCAGATATCCAGGTGGAGAAATCACTCACCAACACTAGCCAGTGTGGAATTCTCGACCATACCGCTTTCCACAAACTCGTCATCCCAAATTAAATCACTTCTCATTCGAACGTCGACGTGGTGCTGGGTCATTGCAATAGATTGCATAGTTTGAATTAGTGTGACCTGAAAAATGGGAATTAGGAGTTTTGGCTCTAGTATGAAATTCTGGTCCTCAGAAAAAATTCTGGTCCTTAGATAAAATTCTGGTCCTTAAAAAAAATTCTGGTCCTTGAAAAAAATTCTGGTCCTTGAAAAATATTCTGGTCCTTAAAAGGTGTCCATGAAAATATATATTTTTCATCGGAAAATTTCGTAACATCCATGAATTTTGTTATTTTAGTTTGTTTTCAAAAAATATTCATGGTAGACGTTGAAATTTTGTTA</canonical>
            <polymorphic>ATTACCTTTTGCGACATGAGCCCAACTTTGCTATCCACCAAGTTCGCTTGAGCATTTATCATGTTGATGTATCCCTTGACCCTTTTATTTCTCATCTCCATTGTTAACGTGAACTCAGTCTCCACATTGATCGTAAGCATAGAGCCTTCTACAGTTTTCAATGGCGGCTCTGCGAAAACCTGAAAATCCAAAATTTACGTTTTCCAAATTTGAAAGCTATGTCTTTACATTTAACGATGCATTCAAATAAACCAGCGCTCTTCCTTGCTGCAGATCAATGACTGGAGGTGATAGAGTAGATGCTTCAACCGACAACGTCCGATTTGGGACCTGCTCGGCGAGCTCTGGTAGTACTGTTCCAATACACAACACGTCACAGCTAGTTTTCAAGAACGGCGACTCGATCTTTGTTCTAAAAAGAAACTTTCGAATACTAGCTAAAAAAGACGGCGTACTTCAAGTGCCCAGCAAAATGAGCTGCAGCAATAATGCTCTGTACKGTGTGCTCATCAATGAACATGTCAATCATTCTGGTGGATCTTGGGAGGGCTTCTGAACAAAATTAGGTTTAAATTCAGATATCCAGGTGGAGAAATCACTCACCAACACTAGCCAGTGTGGAATTCTCGACCATACCGCTTTCCACAAACTCGTCATCCCAAATTAAATCACTTCTCATTCGAACGTCGACGTGGTGCTGGGTCATTGCAATAGATTGCATAGTTTGAATTAGTGTGACCTGAAAAATGGGAATTAGGAGTTTTGGCTCTAGTATGAAATTCTGGTCCTCAGAAAAAATTCTGGTCCTTAGATAAAATTCTGGTCCTTAAAAAAAATTCTGGTCCTTGAAAAAAATTCTGGTCCTTGAAAAATATTCTGGTCCTTAAAAGGTGTCCATGAAAATATATATTTTTCATCGGAAAATTTCGTAACATCCATGAATTTTGTTATTTTAGTTTGTTTTCAAAAAATATTCATGGTAGACGTTGAAATTTTGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCTGGTAGTACTGTTCCAATA</pcr_primer_p1>
		<pcr_primer_p2>CCTGGATATCTGAATTTAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GCTCTGGTAGTACTGTTCCAATACACAACACGTCACAGCTAGTTTTCAAGAACGGCGACTCGATCTTTGTTCTAAAAAGAAACTTTCGAATACTAGCTAAAAAAGACGGCGTACTTCAAGTGCCCAGCAAAATGAGCTGCAGCAATAATGCTCTGTACGGTGTGCTCATCAATGAACATGTCAATCATTCTGGTGGATCTTGGGAGGGCTTCTGAACAAAATTAGGTTTAAATTCAGATATCCAGG</canonical_amplicon>
		<polymorphic_amplicon>GCTCTGGTAGTACTGTTCCAATACACAACACGTCACAGCTAGTTTTCAAGAACGGCGACTCGATCTTTGTTCTAAAAAGAAACTTTCGAATACTAGCTAAAAAAGACGGCGTACTTCAAGTGCCCAGCAAAATGAGCTGCAGCAATAATGCTCTGTACKGTGTGCTCATCAATGAACATGTCAATCATTCTGGTGGATCTTGGGAGGGCTTCTGAACAAAATTAGGTTTAAATTCAGATATCCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11558</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>350439</contig_pos>
        <strand>+</strand>
        <context>AGAAACTTTC[A/G]AATACTAGCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTAGTTTTCAAGAACGGCGACTCGATCTTTGTTCTAAAAAGAAACTTTC</left_flank>
        <right_flank>AATACTAGCTAAAAAAGACGGCGTACTTCAAGTGCCCAGCAAAATGAGCT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCTATCTATTGGCCTGTATTATCACGATCAAAACTGTCTGGTTGTTGAAAACTGTCAAAAAAGACTCAAATTACCTTTTGCGACATGAGCCCAACTTTGCTATCCACCAAGTTCGCTTGAGCATTTATCATGTTGATGTATCCCTTGACCCTTTTATTTCTCATCTCCATTGTTAACGTGAACTCAGTCTCCACATTGATCGTAAGCATAGAGCCTTCTACAGTTTTCAATGGCGGCTCTGCGAAAACCTGAAAATCCAAAATTTACGTTTTCCAAATTTGAAAGCTATGTCTTTACATTTAACGATGCATTCAAATAAACCAGCGCTCTTCCTTGCTGCAGATCAATGACTGGAGGTGATAGAGTAGATGCTTCAACCGACAACGTCCGATTTGGGACCTGCTCGGCGAGCTCTGGTAGTACTGTTCCAATACACAACACGTCACAGCTAGTTTTCAAGAACGGCGACTCGATCTTTGTTCTAAAAAGAAACTTTCGAATACTAGCTAAAAAAGACGGCGTACTTCAAGTGCCCAGCAAAATGAGCTGCAGCAATAATGCTCTGTACGGTGTGCTCATCAATGAACATGTCAATCATTCTGGTGGATCTTGGGAGGGCTTCTGAACAAAATTAGGTTTAAATTCAGATATCCAGGTGGAGAAATCACTCACCAACACTAGCCAGTGTGGAATTCTCGACCATACCGCTTTCCACAAACTCGTCATCCCAAATTAAATCACTTCTCATTCGAACGTCGACGTGGTGCTGGGTCATTGCAATAGATTGCATAGTTTGAATTAGTGTGACCTGAAAAATGGGAATTAGGAGTTTTGGCTCTAGTATGAAATTCTGGTCCTCAGAAAAAATTCTGGTCCTTAGATAAAATTCTGGTCCTTAAAAAAAATTCTGGTCCTTGAAAAAAATTCTGGTCCTTGAAAAATATTCTGGTCCTTAAAAGGTGTCCATGAAAATATATATTTTTCATCGGAAAATTTCG</canonical>
            <polymorphic>AACCTATCTATTGGCCTGTATTATCACGATCAAAACTGTCTGGTTGTTGAAAACTGTCAAAAAAGACTCAAATTACCTTTTGCGACATGAGCCCAACTTTGCTATCCACCAAGTTCGCTTGAGCATTTATCATGTTGATGTATCCCTTGACCCTTTTATTTCTCATCTCCATTGTTAACGTGAACTCAGTCTCCACATTGATCGTAAGCATAGAGCCTTCTACAGTTTTCAATGGCGGCTCTGCGAAAACCTGAAAATCCAAAATTTACGTTTTCCAAATTTGAAAGCTATGTCTTTACATTTAACGATGCATTCAAATAAACCAGCGCTCTTCCTTGCTGCAGATCAATGACTGGAGGTGATAGAGTAGATGCTTCAACCGACAACGTCCGATTTGGGACCTGCTCGGCGAGCTCTGGTAGTACTGTTCCAATACACAACACGTCACAGCTAGTTTTCAAGAACGGCGACTCGATCTTTGTTCTAAAAAGAAACTTTCRAATACTAGCTAAAAAAGACGGCGTACTTCAAGTGCCCAGCAAAATGAGCTGCAGCAATAATGCTCTGTACGGTGTGCTCATCAATGAACATGTCAATCATTCTGGTGGATCTTGGGAGGGCTTCTGAACAAAATTAGGTTTAAATTCAGATATCCAGGTGGAGAAATCACTCACCAACACTAGCCAGTGTGGAATTCTCGACCATACCGCTTTCCACAAACTCGTCATCCCAAATTAAATCACTTCTCATTCGAACGTCGACGTGGTGCTGGGTCATTGCAATAGATTGCATAGTTTGAATTAGTGTGACCTGAAAAATGGGAATTAGGAGTTTTGGCTCTAGTATGAAATTCTGGTCCTCAGAAAAAATTCTGGTCCTTAGATAAAATTCTGGTCCTTAAAAAAAATTCTGGTCCTTGAAAAAAATTCTGGTCCTTGAAAAATATTCTGGTCCTTAAAAGGTGTCCATGAAAATATATATTTTTCATCGGAAAATTTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>498 253 249</canonical_bands>
                <polymorphic_bands>751 249</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>473 241 200 53 26 7</canonical_bands>
                <polymorphic_bands>473 241 226 53 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTCTGGTAGTACTGTTCCAATA</pcr_primer_p1>
		<pcr_primer_p2>CCTGGATATCTGAATTTAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GCTCTGGTAGTACTGTTCCAATACACAACACGTCACAGCTAGTTTTCAAGAACGGCGACTCGATCTTTGTTCTAAAAAGAAACTTTCGAATACTAGCTAAAAAAGACGGCGTACTTCAAGTGCCCAGCAAAATGAGCTGCAGCAATAATGCTCTGTACGGTGTGCTCATCAATGAACATGTCAATCATTCTGGTGGATCTTGGGAGGGCTTCTGAACAAAATTAGGTTTAAATTCAGATATCCAGG</canonical_amplicon>
		<polymorphic_amplicon>GCTCTGGTAGTACTGTTCCAATACACAACACGTCACAGCTAGTTTTCAAGAACGGCGACTCGATCTTTGTTCTAAAAAGAAACTTTCRAATACTAGCTAAAAAAGACGGCGTACTTCAAGTGCCCAGCAAAATGAGCTGCAGCAATAATGCTCTGTACGGTGTGCTCATCAATGAACATGTCAATCATTCTGGTGGATCTTGGGAGGGCTTCTGAACAAAATTAGGTTTAAATTCAGATATCCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11559</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>350425</contig_pos>
        <strand>+</strand>
        <context>TYTTTGTTCT[A/G]AAAAGAAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACAACACGTCACAGCTAGTTTTCAAGAACGGCGACTCGATCTTTGTTCT</left_flank>
        <right_flank>AAAAGAAACTTTCGAATACTAGCTAAAAAAGACGGCGTACTTCAAGTGCC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGTAGACTGAAACCTATCTATTGGCCTGTATTATCACGATCAAAACTGTCTGGTTGTTGAAAACTGTCAAAAAAGACTCAAATTACCTTTTGCGACATGAGCCCAACTTTGCTATCCACCAAGTTCGCTTGAGCATTTATCATGTTGATGTATCCCTTGACCCTTTTATTTCTCATCTCCATTGTTAACGTGAACTCAGTCTCCACATTGATCGTAAGCATAGAGCCTTCTACAGTTTTCAATGGCGGCTCTGCGAAAACCTGAAAATCCAAAATTTACGTTTTCCAAATTTGAAAGCTATGTCTTTACATTTAACGATGCATTCAAATAAACCAGCGCTCTTCCTTGCTGCAGATCAATGACTGGAGGTGATAGAGTAGATGCTTCAACCGACAACGTCCGATTTGGGACCTGCTCGGCGAGCTCTGGTAGTACTGTTCCAATACACAACACGTCACAGCTAGTTTTCAAGAACGGCGACTCGATCTTTGTTCTAAAAAGAAACTTTCGAATACTAGCTAAAAAAGACGGCGTACTTCAAGTGCCCAGCAAAATGAGCTGCAGCAATAATGCTCTGTACGGTGTGCTCATCAATGAACATGTCAATCATTCTGGTGGATCTTGGGAGGGCTTCTGAACAAAATTAGGTTTAAATTCAGATATCCAGGTGGAGAAATCACTCACCAACACTAGCCAGTGTGGAATTCTCGACCATACCGCTTTCCACAAACTCGTCATCCCAAATTAAATCACTTCTCATTCGAACGTCGACGTGGTGCTGGGTCATTGCAATAGATTGCATAGTTTGAATTAGTGTGACCTGAAAAATGGGAATTAGGAGTTTTGGCTCTAGTATGAAATTCTGGTCCTCAGAAAAAATTCTGGTCCTTAGATAAAATTCTGGTCCTTAAAAAAAATTCTGGTCCTTGAAAAAAATTCTGGTCCTTGAAAAATATTCTGGTCCTTAAAAGGTGTCCATGAAAATATATATTTTTC</canonical>
            <polymorphic>TTTTTGTAGACTGAAACCTATCTATTGGCCTGTATTATCACGATCAAAACTGTCTGGTTGTTGAAAACTGTCAAAAAAGACTCAAATTACCTTTTGCGACATGAGCCCAACTTTGCTATCCACCAAGTTCGCTTGAGCATTTATCATGTTGATGTATCCCTTGACCCTTTTATTTCTCATCTCCATTGTTAACGTGAACTCAGTCTCCACATTGATCGTAAGCATAGAGCCTTCTACAGTTTTCAATGGCGGCTCTGCGAAAACCTGAAAATCCAAAATTTACGTTTTCCAAATTTGAAAGCTATGTCTTTACATTTAACGATGCATTCAAATAAACCAGCGCTCTTCCTTGCTGCAGATCAATGACTGGAGGTGATAGAGTAGATGCTTCAACCGACAACGTCCGATTTGGGACCTGCTCGGCGAGCTCTGGTAGTACTGTTCCAATACACAACACGTCACAGCTAGTTTTCAAGAACGGCGACTCGATCTTTGTTCTRAAAAGAAACTTTCGAATACTAGCTAAAAAAGACGGCGTACTTCAAGTGCCCAGCAAAATGAGCTGCAGCAATAATGCTCTGTACGGTGTGCTCATCAATGAACATGTCAATCATTCTGGTGGATCTTGGGAGGGCTTCTGAACAAAATTAGGTTTAAATTCAGATATCCAGGTGGAGAAATCACTCACCAACACTAGCCAGTGTGGAATTCTCGACCATACCGCTTTCCACAAACTCGTCATCCCAAATTAAATCACTTCTCATTCGAACGTCGACGTGGTGCTGGGTCATTGCAATAGATTGCATAGTTTGAATTAGTGTGACCTGAAAAATGGGAATTAGGAGTTTTGGCTCTAGTATGAAATTCTGGTCCTCAGAAAAAATTCTGGTCCTTAGATAAAATTCTGGTCCTTAAAAAAAATTCTGGTCCTTGAAAAAAATTCTGGTCCTTGAAAAATATTCTGGTCCTTAAAAGGTGTCCATGAAAATATATATTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCTGGTAGTACTGTTCCAATA</pcr_primer_p1>
		<pcr_primer_p2>CCTGGATATCTGAATTTAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GCTCTGGTAGTACTGTTCCAATACACAACACGTCACAGCTAGTTTTCAAGAACGGCGACTCGATCTTTGTTCTAAAAAGAAACTTTCGAATACTAGCTAAAAAAGACGGCGTACTTCAAGTGCCCAGCAAAATGAGCTGCAGCAATAATGCTCTGTACGGTGTGCTCATCAATGAACATGTCAATCATTCTGGTGGATCTTGGGAGGGCTTCTGAACAAAATTAGGTTTAAATTCAGATATCCAGG</canonical_amplicon>
		<polymorphic_amplicon>GCTCTGGTAGTACTGTTCCAATACACAACACGTCACAGCTAGTTTTCAAGAACGGCGACTCGATCTTTGTTCTRAAAAGAAACTTTCGAATACTAGCTAAAAAAGACGGCGTACTTCAAGTGCCCAGCAAAATGAGCTGCAGCAATAATGCTCTGTACGGTGTGCTCATCAATGAACATGTCAATCATTCTGGTGGATCTTGGGAGGGCTTCTGAACAAAATTAGGTTTAAATTCAGATATCCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11560</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>350416</contig_pos>
        <strand>+</strand>
        <context>GCGACTCGAT[C/T]TTTGTTCTRA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTCCAATACACAACACGTCACAGCTAGTTTTCAAGAACGGCGACTCGAT</left_flank>
        <right_flank>TTTGTTCTAAAAAGAAACTTTCGAATACTAGCTAAAAAAGACGGCGTACT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTACTATTATTTTTGTAGACTGAAACCTATCTATTGGCCTGTATTATCACGATCAAAACTGTCTGGTTGTTGAAAACTGTCAAAAAAGACTCAAATTACCTTTTGCGACATGAGCCCAACTTTGCTATCCACCAAGTTCGCTTGAGCATTTATCATGTTGATGTATCCCTTGACCCTTTTATTTCTCATCTCCATTGTTAACGTGAACTCAGTCTCCACATTGATCGTAAGCATAGAGCCTTCTACAGTTTTCAATGGCGGCTCTGCGAAAACCTGAAAATCCAAAATTTACGTTTTCCAAATTTGAAAGCTATGTCTTTACATTTAACGATGCATTCAAATAAACCAGCGCTCTTCCTTGCTGCAGATCAATGACTGGAGGTGATAGAGTAGATGCTTCAACCGACAACGTCCGATTTGGGACCTGCTCGGCGAGCTCTGGTAGTACTGTTCCAATACACAACACGTCACAGCTAGTTTTCAAGAACGGCGACTCGATCTTTGTTCTAAAAAGAAACTTTCGAATACTAGCTAAAAAAGACGGCGTACTTCAAGTGCCCAGCAAAATGAGCTGCAGCAATAATGCTCTGTACGGTGTGCTCATCAATGAACATGTCAATCATTCTGGTGGATCTTGGGAGGGCTTCTGAACAAAATTAGGTTTAAATTCAGATATCCAGGTGGAGAAATCACTCACCAACACTAGCCAGTGTGGAATTCTCGACCATACCGCTTTCCACAAACTCGTCATCCCAAATTAAATCACTTCTCATTCGAACGTCGACGTGGTGCTGGGTCATTGCAATAGATTGCATAGTTTGAATTAGTGTGACCTGAAAAATGGGAATTAGGAGTTTTGGCTCTAGTATGAAATTCTGGTCCTCAGAAAAAATTCTGGTCCTTAGATAAAATTCTGGTCCTTAAAAAAAATTCTGGTCCTTGAAAAAAATTCTGGTCCTTGAAAAATATTCTGGTCCTTAAAAGGTGTCCATGAAAATAT</canonical>
            <polymorphic>CTACTATTATTTTTGTAGACTGAAACCTATCTATTGGCCTGTATTATCACGATCAAAACTGTCTGGTTGTTGAAAACTGTCAAAAAAGACTCAAATTACCTTTTGCGACATGAGCCCAACTTTGCTATCCACCAAGTTCGCTTGAGCATTTATCATGTTGATGTATCCCTTGACCCTTTTATTTCTCATCTCCATTGTTAACGTGAACTCAGTCTCCACATTGATCGTAAGCATAGAGCCTTCTACAGTTTTCAATGGCGGCTCTGCGAAAACCTGAAAATCCAAAATTTACGTTTTCCAAATTTGAAAGCTATGTCTTTACATTTAACGATGCATTCAAATAAACCAGCGCTCTTCCTTGCTGCAGATCAATGACTGGAGGTGATAGAGTAGATGCTTCAACCGACAACGTCCGATTTGGGACCTGCTCGGCGAGCTCTGGTAGTACTGTTCCAATACACAACACGTCACAGCTAGTTTTCAAGAACGGCGACTCGATYTTTGTTCTAAAAAGAAACTTTCGAATACTAGCTAAAAAAGACGGCGTACTTCAAGTGCCCAGCAAAATGAGCTGCAGCAATAATGCTCTGTACGGTGTGCTCATCAATGAACATGTCAATCATTCTGGTGGATCTTGGGAGGGCTTCTGAACAAAATTAGGTTTAAATTCAGATATCCAGGTGGAGAAATCACTCACCAACACTAGCCAGTGTGGAATTCTCGACCATACCGCTTTCCACAAACTCGTCATCCCAAATTAAATCACTTCTCATTCGAACGTCGACGTGGTGCTGGGTCATTGCAATAGATTGCATAGTTTGAATTAGTGTGACCTGAAAAATGGGAATTAGGAGTTTTGGCTCTAGTATGAAATTCTGGTCCTCAGAAAAAATTCTGGTCCTTAGATAAAATTCTGGTCCTTAAAAAAAATTCTGGTCCTTGAAAAAAATTCTGGTCCTTGAAAAATATTCTGGTCCTTAAAAGGTGTCCATGAAAATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>370 172 144 134 130 50</canonical_bands>
                <polymorphic_bands>370 264 172 144 50</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTCTGGTAGTACTGTTCCAATA</pcr_primer_p1>
		<pcr_primer_p2>CCTGGATATCTGAATTTAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GCTCTGGTAGTACTGTTCCAATACACAACACGTCACAGCTAGTTTTCAAGAACGGCGACTCGATCTTTGTTCTAAAAAGAAACTTTCGAATACTAGCTAAAAAAGACGGCGTACTTCAAGTGCCCAGCAAAATGAGCTGCAGCAATAATGCTCTGTACGGTGTGCTCATCAATGAACATGTCAATCATTCTGGTGGATCTTGGGAGGGCTTCTGAACAAAATTAGGTTTAAATTCAGATATCCAGG</canonical_amplicon>
		<polymorphic_amplicon>GCTCTGGTAGTACTGTTCCAATACACAACACGTCACAGCTAGTTTTCAAGAACGGCGACTCGATYTTTGTTCTAAAAAGAAACTTTCGAATACTAGCTAAAAAAGACGGCGTACTTCAAGTGCCCAGCAAAATGAGCTGCAGCAATAATGCTCTGTACGGTGTGCTCATCAATGAACATGTCAATCATTCTGGTGGATCTTGGGAGGGCTTCTGAACAAAATTAGGTTTAAATTCAGATATCCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11561</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>350242</contig_pos>
        <strand>+</strand>
        <context>TCTTTACATT[C/T]AACGATGCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAATCCAAAATTTACGTTTTCCAAATTTGAAAGCTATGTCTTTACATT</left_flank>
        <right_flank>AACGATGCATTCAAATAAACCAGCGCTCTTCCTTGCTGCAGATCAATGAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTAGGGCTCAGACTACCCAAAATTTGGAATTTTCAGTTATGTGTTTTCAATGAAACATAACCTAAAATTGAAAAATTAAAAAAAAAACTTTTGTAAAAATTTCGAAATTTCAAAATTTGGAACTACTCTATTCTCAAAATGTGTTCTTTCAGGAAAATCATATTTGAAATCCCTACTATTATTTTTGTAGACTGAAACCTATCTATTGGCCTGTATTATCACGATCAAAACTGTCTGGTTGTTGAAAACTGTCAAAAAAGACTCAAATTACCTTTTGCGACATGAGCCCAACTTTGCTATCCACCAAGTTCGCTTGAGCATTTATCATGTTGATGTATCCCTTGACCCTTTTATTTCTCATCTCCATTGTTAACGTGAACTCAGTCTCCACATTGATCGTAAGCATAGAGCCTTCTACAGTTTTCAATGGCGGCTCTGCGAAAACCTGAAAATCCAAAATTTACGTTTTCCAAATTTGAAAGCTATGTCTTTACATTTAACGATGCATTCAAATAAACCAGCGCTCTTCCTTGCTGCAGATCAATGACTGGAGGTGATAGAGTAGATGCTTCAACCGACAACGTCCGATTTGGGACCTGCTCGGCGAGCTCTGGTAGTACTGTTCCAATACACAACACGTCACAGCTAGTTTTCAAGAACGGCGACTCGATCTTTGTTCTAAAAAGAAACTTTCGAATACTAGCTAAAAAAGACGGCGTACTTCAAGTGCCCAGCAAAATGAGCTGCAGCAATAATGCTCTGTACGGTGTGCTCATCAATGAACATGTCAATCATTCTGGTGGATCTTGGGAGGGCTTCTGAACAAAATTAGGTTTAAATTCAGATATCCAGGTGGAGAAATCACTCACCAACACTAGCCAGTGTGGAATTCTCGACCATACCGCTTTCCACAAACTCGTCATCCCAAATTAAATCACTTCTCATTCGAACGTCGACGTGGTGCTGGGTCATTGCAATAGATTGCATAGTTTGAATTA</canonical>
            <polymorphic>CTGTAGGGCTCAGACTACCCAAAATTTGGAATTTTCAGTTATGTGTTTTCAATGAAACATAACCTAAAATTGAAAAATTAAAAAAAAAACTTTTGTAAAAATTTCGAAATTTCAAAATTTGGAACTACTCTATTCTCAAAATGTGTTCTTTCAGGAAAATCATATTTGAAATCCCTACTATTATTTTTGTAGACTGAAACCTATCTATTGGCCTGTATTATCACGATCAAAACTGTCTGGTTGTTGAAAACTGTCAAAAAAGACTCAAATTACCTTTTGCGACATGAGCCCAACTTTGCTATCCACCAAGTTCGCTTGAGCATTTATCATGTTGATGTATCCCTTGACCCTTTTATTTCTCATCTCCATTGTTAACGTGAACTCAGTCTCCACATTGATCGTAAGCATAGAGCCTTCTACAGTTTTCAATGGCGGCTCTGCGAAAACCTGAAAATCCAAAATTTACGTTTTCCAAATTTGAAAGCTATGTCTTTACATTYAACGATGCATTCAAATAAACCAGCGCTCTTCCTTGCTGCAGATCAATGACTGGAGGTGATAGAGTAGATGCTTCAACCGACAACGTCCGATTTGGGACCTGCTCGGCGAGCTCTGGTAGTACTGTTCCAATACACAACACGTCACAGCTAGTTTTCAAGAACGGCGACTCGATCTTTGTTCTAAAAAGAAACTTTCGAATACTAGCTAAAAAAGACGGCGTACTTCAAGTGCCCAGCAAAATGAGCTGCAGCAATAATGCTCTGTACGGTGTGCTCATCAATGAACATGTCAATCATTCTGGTGGATCTTGGGAGGGCTTCTGAACAAAATTAGGTTTAAATTCAGATATCCAGGTGGAGAAATCACTCACCAACACTAGCCAGTGTGGAATTCTCGACCATACCGCTTTCCACAAACTCGTCATCCCAAATTAAATCACTTCTCATTCGAACGTCGACGTGGTGCTGGGTCATTGCAATAGATTGCATAGTTTGAATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>338 294 127 95 78 68</canonical_bands>
                <polymorphic_bands>465 294 95 78 68</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGCATTTATCATGTTGATGTA</pcr_primer_p1>
		<pcr_primer_p2>TACTCTATCACCTCCAGTCATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAGCATTTATCATGTTGATGTATCCCTTGACCCTTTTATTTCTCATCTCCATTGTTAACGTGAACTCAGTCTCCACATTGATCGTAAGCATAGAGCCTTCTACAGTTTTCAATGGCGGCTCTGCGAAAACCTGAAAATCCAAAATTTACGTTTTCCAAATTTGAAAGCTATGTCTTTACATTTAACGATGCATTCAAATAAACCAGCGCTCTTCCTTGCTGCAGATCAATGACTGGAGGTGATAGAGTA</canonical_amplicon>
		<polymorphic_amplicon>TGAGCATTTATCATGTTGATGTATCCCTTGACCCTTTTATTTCTCATCTCCATTGTTAACGTGAACTCAGTCTCCACATTGATCGTAAGCATAGAGCCTTCTACAGTTTTCAATGGCGGCTCTGCGAAAACCTGAAAATCCAAAATTTACGTTTTCCAAATTTGAAAGCTATGTCTTTACATTYAACGATGCATTCAAATAAACCAGCGCTCTTCCTTGCTGCAGATCAATGACTGGAGGTGATAGAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11562</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>350228</contig_pos>
        <strand>+</strand>
        <context>ATTTGAAAGC[C/T]ATGTCTTTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCTGCGAAAACCTGAAAATCCAAAATTTACGTTTTCCAAATTTGAAAGC</left_flank>
        <right_flank>ATGTCTTTACATTTAACGATGCATTCAAATAAACCAGCGCTCTTCCTTGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTTGACCGGTACTGTAGGGCTCAGACTACCCAAAATTTGGAATTTTCAGTTATGTGTTTTCAATGAAACATAACCTAAAATTGAAAAATTAAAAAAAAAACTTTTGTAAAAATTTCGAAATTTCAAAATTTGGAACTACTCTATTCTCAAAATGTGTTCTTTCAGGAAAATCATATTTGAAATCCCTACTATTATTTTTGTAGACTGAAACCTATCTATTGGCCTGTATTATCACGATCAAAACTGTCTGGTTGTTGAAAACTGTCAAAAAAGACTCAAATTACCTTTTGCGACATGAGCCCAACTTTGCTATCCACCAAGTTCGCTTGAGCATTTATCATGTTGATGTATCCCTTGACCCTTTTATTTCTCATCTCCATTGTTAACGTGAACTCAGTCTCCACATTGATCGTAAGCATAGAGCCTTCTACAGTTTTCAATGGCGGCTCTGCGAAAACCTGAAAATCCAAAATTTACGTTTTCCAAATTTGAAAGCTATGTCTTTACATTTAACGATGCATTCAAATAAACCAGCGCTCTTCCTTGCTGCAGATCAATGACTGGAGGTGATAGAGTAGATGCTTCAACCGACAACGTCCGATTTGGGACCTGCTCGGCGAGCTCTGGTAGTACTGTTCCAATACACAACACGTCACAGCTAGTTTTCAAGAACGGCGACTCGATCTTTGTTCTAAAAAGAAACTTTCGAATACTAGCTAAAAAAGACGGCGTACTTCAAGTGCCCAGCAAAATGAGCTGCAGCAATAATGCTCTGTACGGTGTGCTCATCAATGAACATGTCAATCATTCTGGTGGATCTTGGGAGGGCTTCTGAACAAAATTAGGTTTAAATTCAGATATCCAGGTGGAGAAATCACTCACCAACACTAGCCAGTGTGGAATTCTCGACCATACCGCTTTCCACAAACTCGTCATCCCAAATTAAATCACTTCTCATTCGAACGTCGACGTGGTGCTGGGTCATTGCAATAGATTG</canonical>
            <polymorphic>CTTTTTGACCGGTACTGTAGGGCTCAGACTACCCAAAATTTGGAATTTTCAGTTATGTGTTTTCAATGAAACATAACCTAAAATTGAAAAATTAAAAAAAAAACTTTTGTAAAAATTTCGAAATTTCAAAATTTGGAACTACTCTATTCTCAAAATGTGTTCTTTCAGGAAAATCATATTTGAAATCCCTACTATTATTTTTGTAGACTGAAACCTATCTATTGGCCTGTATTATCACGATCAAAACTGTCTGGTTGTTGAAAACTGTCAAAAAAGACTCAAATTACCTTTTGCGACATGAGCCCAACTTTGCTATCCACCAAGTTCGCTTGAGCATTTATCATGTTGATGTATCCCTTGACCCTTTTATTTCTCATCTCCATTGTTAACGTGAACTCAGTCTCCACATTGATCGTAAGCATAGAGCCTTCTACAGTTTTCAATGGCGGCTCTGCGAAAACCTGAAAATCCAAAATTTACGTTTTCCAAATTTGAAAGCYATGTCTTTACATTTAACGATGCATTCAAATAAACCAGCGCTCTTCCTTGCTGCAGATCAATGACTGGAGGTGATAGAGTAGATGCTTCAACCGACAACGTCCGATTTGGGACCTGCTCGGCGAGCTCTGGTAGTACTGTTCCAATACACAACACGTCACAGCTAGTTTTCAAGAACGGCGACTCGATCTTTGTTCTAAAAAGAAACTTTCGAATACTAGCTAAAAAAGACGGCGTACTTCAAGTGCCCAGCAAAATGAGCTGCAGCAATAATGCTCTGTACGGTGTGCTCATCAATGAACATGTCAATCATTCTGGTGGATCTTGGGAGGGCTTCTGAACAAAATTAGGTTTAAATTCAGATATCCAGGTGGAGAAATCACTCACCAACACTAGCCAGTGTGGAATTCTCGACCATACCGCTTTCCACAAACTCGTCATCCCAAATTAAATCACTTCTCATTCGAACGTCGACGTGGTGCTGGGTCATTGCAATAGATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>498 241 126 58 40 37</canonical_bands>
                <polymorphic_bands>624 241 58 40 37</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>203 126 124 106 77 72 63 58 49 40 37 23 22</canonical_bands>
                <polymorphic_bands>203 175 124 106 77 72 63 58 40 37 23 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGCATTTATCATGTTGATGTA</pcr_primer_p1>
		<pcr_primer_p2>TACTCTATCACCTCCAGTCATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAGCATTTATCATGTTGATGTATCCCTTGACCCTTTTATTTCTCATCTCCATTGTTAACGTGAACTCAGTCTCCACATTGATCGTAAGCATAGAGCCTTCTACAGTTTTCAATGGCGGCTCTGCGAAAACCTGAAAATCCAAAATTTACGTTTTCCAAATTTGAAAGCTATGTCTTTACATTTAACGATGCATTCAAATAAACCAGCGCTCTTCCTTGCTGCAGATCAATGACTGGAGGTGATAGAGTA</canonical_amplicon>
		<polymorphic_amplicon>TGAGCATTTATCATGTTGATGTATCCCTTGACCCTTTTATTTCTCATCTCCATTGTTAACGTGAACTCAGTCTCCACATTGATCGTAAGCATAGAGCCTTCTACAGTTTTCAATGGCGGCTCTGCGAAAACCTGAAAATCCAAAATTTACGTTTTCCAAATTTGAAAGCYATGTCTTTACATTTAACGATGCATTCAAATAAACCAGCGCTCTTCCTTGCTGCAGATCAATGACTGGAGGTGATAGAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11563</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>376285</contig_pos>
        <strand>+</strand>
        <context>AAACAAATTC[A/G]ACCTTGAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGGAAACAAATTC</left_flank>
        <right_flank>ACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATAAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGGGTTCCCTAATAACATCAGCAAAATTCCGCGCAATTCCAAATTTTTTCAGAAAAGTTCTGTGTAGGGATGAGTTTACATCCGAAGAGTAATTTCAAAATTACTACTTTCGATTCATCCCATCGACCACTGAGAATGCAACAAGTAATTATTCGGTCTAGGTTCTTTAATCTTCAACAAAAAAGTTAAACAGTTACCTTCATTTTCACTTTCCGTTCTTCTCATGGCCCCGCCTAACAAAGTCTCTATTTATGCTTCATTGTTTCTTGGTAATTTTTGTAAAGGGTCATCAATAGGCATGCATCTTTTTTTTTCATTTTTTTTTCTCCTCATATGTCAATCATCAATTTTTCAAATGGCTATCCGTTGGTTCTTCTTCTTCTTCTTTTTTTTTTTTTGGCAGAGAAAATTCGAGAGGATAGGGAATGTGTCTTCGTCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGGAAACAAATTCAACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTGGTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCATCGTCCGTGTGTAGATTGGCTTTAGATTGGTACGTTCTGTACCCATAAGAACTGATATTTTCACGAATATGGCGTGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCGAAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGATTCGACGTGTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGTCGTGTCGACTCGTATAGACTCA</canonical>
            <polymorphic>TAGGGGTTCCCTAATAACATCAGCAAAATTCCGCGCAATTCCAAATTTTTTCAGAAAAGTTCTGTGTAGGGATGAGTTTACATCCGAAGAGTAATTTCAAAATTACTACTTTCGATTCATCCCATCGACCACTGAGAATGCAACAAGTAATTATTCGGTCTAGGTTCTTTAATCTTCAACAAAAAAGTTAAACAGTTACCTTCATTTTCACTTTCCGTTCTTCTCATGGCCCCGCCTAACAAAGTCTCTATTTATGCTTCATTGTTTCTTGGTAATTTTTGTAAAGGGTCATCAATAGGCATGCATCTTTTTTTTTCATTTTTTTTTCTCCTCATATGTCAATCATCAATTTTTCAAATGGCTATCCGTTGGTTCTTCTTCTTCTTCTTTTTTTTTTTTTGGCAGAGAAAATTCGAGAGGATAGGGAATGTGTCTTCGTCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGGAAACAAATTCRACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTGGTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCATCGTCCGTGTGTAGATTGGCTTTAGATTGGTACGTTCTGTACCCATAAGAACTGATATTTTCACGAATATGGCGTGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCGAAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGATTCGACGTGTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGTCGTGTCGACTCGTATAGACTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAGAAAATTCGAGAGGATAG</pcr_primer_p1>
		<pcr_primer_p2>TGTTCTTTTCTGACTGTGATCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGAGAAAATTCGAGAGGATAGGGAATGTGTCTTCGTCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGGAAACAAATTCAACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACA</canonical_amplicon>
		<polymorphic_amplicon>CAGAGAAAATTCGAGAGGATAGGGAATGTGTCTTCGTCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGGAAACAAATTCRACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11564</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>376332</contig_pos>
        <strand>+</strand>
        <context>GTATCATATA[A/G]AACAGAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATA</left_flank>
        <right_flank>AACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCAGAAAAGTTCTGTGTAGGGATGAGTTTACATCCGAAGAGTAATTTCAAAATTACTACTTTCGATTCATCCCATCGACCACTGAGAATGCAACAAGTAATTATTCGGTCTAGGTTCTTTAATCTTCAACAAAAAAGTTAAACAGTTACCTTCATTTTCACTTTCCGTTCTTCTCATGGCCCCGCCTAACAAAGTCTCTATTTATGCTTCATTGTTTCTTGGTAATTTTTGTAAAGGGTCATCAATAGGCATGCATCTTTTTTTTTCATTTTTTTTTCTCCTCATATGTCAATCATCAATTTTTCAAATGGCTATCCGTTGGTTCTTCTTCTTCTTCTTTTTTTTTTTTTGGCAGAGAAAATTCGAGAGGATAGGGAATGTGTCTTCGTCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGGAAACAAATTCAACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTGGTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCATCGTCCGTGTGTAGATTGGCTTTAGATTGGTACGTTCTGTACCCATAAGAACTGATATTTTCACGAATATGGCGTGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCGAAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGATTCGACGTGTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGTCGTGTCGACTCGTATAGACTCACGTCGATTTGTGTCGACACTGTATCGACTCGTGTCGTGTCGATACGA</canonical>
            <polymorphic>TTTTCAGAAAAGTTCTGTGTAGGGATGAGTTTACATCCGAAGAGTAATTTCAAAATTACTACTTTCGATTCATCCCATCGACCACTGAGAATGCAACAAGTAATTATTCGGTCTAGGTTCTTTAATCTTCAACAAAAAAGTTAAACAGTTACCTTCATTTTCACTTTCCGTTCTTCTCATGGCCCCGCCTAACAAAGTCTCTATTTATGCTTCATTGTTTCTTGGTAATTTTTGTAAAGGGTCATCAATAGGCATGCATCTTTTTTTTTCATTTTTTTTTCTCCTCATATGTCAATCATCAATTTTTCAAATGGCTATCCGTTGGTTCTTCTTCTTCTTCTTTTTTTTTTTTTGGCAGAGAAAATTCGAGAGGATAGGGAATGTGTCTTCGTCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGGAAACAAATTCAACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATARAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTGGTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCATCGTCCGTGTGTAGATTGGCTTTAGATTGGTACGTTCTGTACCCATAAGAACTGATATTTTCACGAATATGGCGTGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCGAAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGATTCGACGTGTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGTCGTGTCGACTCGTATAGACTCACGTCGATTTGTGTCGACACTGTATCGACTCGTGTCGTGTCGATACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAGAAAATTCGAGAGGATAG</pcr_primer_p1>
		<pcr_primer_p2>TGTTCTTTTCTGACTGTGATCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGAGAAAATTCGAGAGGATAGGGAATGTGTCTTCGTCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGGAAACAAATTCAACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACA</canonical_amplicon>
		<polymorphic_amplicon>CAGAGAAAATTCGAGAGGATAGGGAATGTGTCTTCGTCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGGAAACAAATTCAACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATARAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11565</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>376399</contig_pos>
        <strand></strand>
        <context>CAGATTAGAA[G/A]TATCGGYCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAA</left_flank>
        <right_flank>TATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCATCCCATCGACCACTGAGAATGCAACAAGTAATTATTCGGTCTAGGTTCTTTAATCTTCAACAAAAAAGTTAAACAGTTACCTTCATTTTCACTTTCCGTTCTTCTCATGGCCCCGCCTAACAAAGTCTCTATTTATGCTTCATTGTTTCTTGGTAATTTTTGTAAAGGGTCATCAATAGGCATGCATCTTTTTTTTTCATTTTTTTTTCTCCTCATATGTCAATCATCAATTTTTCAAATGGCTATCCGTTGGTTCTTCTTCTTCTTCTTTTTTTTTTTTTGGCAGAGAAAATTCGAGAGGATAGGGAATGTGTCTTCGTCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGGAAACAAATTCAACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTGGTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCATCGTCCGTGTGTAGATTGGCTTTAGATTGGTACGTTCTGTACCCATAAGAACTGATATTTTCACGAATATGGCGTGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCGAAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGATTCGACGTGTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGTCGTGTCGACTCGTATAGACTCACGTCGATTTGTGTCGACACTGTATCGACTCGTGTCGTGTCGATACGAATCGACACGACACGTGATTCCAAACGCCCTCTTTTGAACGGTAATTTTTGGAGGGAGTTCAATTTTT</canonical>
            <polymorphic>ATTCATCCCATCGACCACTGAGAATGCAACAAGTAATTATTCGGTCTAGGTTCTTTAATCTTCAACAAAAAAGTTAAACAGTTACCTTCATTTTCACTTTCCGTTCTTCTCATGGCCCCGCCTAACAAAGTCTCTATTTATGCTTCATTGTTTCTTGGTAATTTTTGTAAAGGGTCATCAATAGGCATGCATCTTTTTTTTTCATTTTTTTTTCTCCTCATATGTCAATCATCAATTTTTCAAATGGCTATCCGTTGGTTCTTCTTCTTCTTCTTTTTTTTTTTTTGGCAGAGAAAATTCGAGAGGATAGGGAATGTGTCTTCGTCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGGAAACAAATTCAACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAARTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTGGTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCATCGTCCGTGTGTAGATTGGCTTTAGATTGGTACGTTCTGTACCCATAAGAACTGATATTTTCACGAATATGGCGTGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCGAAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGATTCGACGTGTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGTCGTGTCGACTCGTATAGACTCACGTCGATTTGTGTCGACACTGTATCGACTCGTGTCGTGTCGATACGAATCGACACGACACGTGATTCCAAACGCCCTCTTTTGAACGGTAATTTTTGGAGGGAGTTCAATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTATTTTGTTTTCATTCACTTG</pcr_primer_p1>
		<pcr_primer_p2>TACCAATCTAAAGCCAATCTACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTGGTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCATCGTCCGTGTGTAGATTGGCTTTAGATTGGTA</canonical_amplicon>
		<polymorphic_amplicon>TCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAARTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTGGTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCATCGTCCGTGTGTAGATTGGCTTTAGATTGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11566</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>376406</contig_pos>
        <strand>+</strand>
        <context>GAARTATCGG[C/T]CATATTTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGG</left_flank>
        <right_flank>CATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTGGTATTG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATCGACCACTGAGAATGCAACAAGTAATTATTCGGTCTAGGTTCTTTAATCTTCAACAAAAAAGTTAAACAGTTACCTTCATTTTCACTTTCCGTTCTTCTCATGGCCCCGCCTAACAAAGTCTCTATTTATGCTTCATTGTTTCTTGGTAATTTTTGTAAAGGGTCATCAATAGGCATGCATCTTTTTTTTTCATTTTTTTTTCTCCTCATATGTCAATCATCAATTTTTCAAATGGCTATCCGTTGGTTCTTCTTCTTCTTCTTTTTTTTTTTTTGGCAGAGAAAATTCGAGAGGATAGGGAATGTGTCTTCGTCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGGAAACAAATTCAACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTGGTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCATCGTCCGTGTGTAGATTGGCTTTAGATTGGTACGTTCTGTACCCATAAGAACTGATATTTTCACGAATATGGCGTGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCGAAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGATTCGACGTGTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGTCGTGTCGACTCGTATAGACTCACGTCGATTTGTGTCGACACTGTATCGACTCGTGTCGTGTCGATACGAATCGACACGACACGTGATTCCAAACGCCCTCTTTTGAACGGTAATTTTTGGAGGGAGTTCAATTTTTTTTGAAT</canonical>
            <polymorphic>CCATCGACCACTGAGAATGCAACAAGTAATTATTCGGTCTAGGTTCTTTAATCTTCAACAAAAAAGTTAAACAGTTACCTTCATTTTCACTTTCCGTTCTTCTCATGGCCCCGCCTAACAAAGTCTCTATTTATGCTTCATTGTTTCTTGGTAATTTTTGTAAAGGGTCATCAATAGGCATGCATCTTTTTTTTTCATTTTTTTTTCTCCTCATATGTCAATCATCAATTTTTCAAATGGCTATCCGTTGGTTCTTCTTCTTCTTCTTTTTTTTTTTTTGGCAGAGAAAATTCGAGAGGATAGGGAATGTGTCTTCGTCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGGAAACAAATTCAACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGYCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTGGTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCATCGTCCGTGTGTAGATTGGCTTTAGATTGGTACGTTCTGTACCCATAAGAACTGATATTTTCACGAATATGGCGTGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCGAAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGATTCGACGTGTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGTCGTGTCGACTCGTATAGACTCACGTCGATTTGTGTCGACACTGTATCGACTCGTGTCGTGTCGATACGAATCGACACGACACGTGATTCCAAACGCCCTCTTTTGAACGGTAATTTTTGGAGGGAGTTCAATTTTTTTTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTATTTTGTTTTCATTCACTTG</pcr_primer_p1>
		<pcr_primer_p2>TACCAATCTAAAGCCAATCTACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTGGTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCATCGTCCGTGTGTAGATTGGCTTTAGATTGGTA</canonical_amplicon>
		<polymorphic_amplicon>TCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGYCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTGGTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCATCGTCCGTGTGTAGATTGGCTTTAGATTGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11567</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>376450</contig_pos>
        <strand>+</strand>
        <context>GAAACGATTT[G/T]GTATTGATGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTT</left_flank>
        <right_flank>GTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTTAATCTTCAACAAAAAAGTTAAACAGTTACCTTCATTTTCACTTTCCGTTCTTCTCATGGCCCCGCCTAACAAAGTCTCTATTTATGCTTCATTGTTTCTTGGTAATTTTTGTAAAGGGTCATCAATAGGCATGCATCTTTTTTTTTCATTTTTTTTTCTCCTCATATGTCAATCATCAATTTTTCAAATGGCTATCCGTTGGTTCTTCTTCTTCTTCTTTTTTTTTTTTTGGCAGAGAAAATTCGAGAGGATAGGGAATGTGTCTTCGTCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGGAAACAAATTCAACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTGGTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCATCGTCCGTGTGTAGATTGGCTTTAGATTGGTACGTTCTGTACCCATAAGAACTGATATTTTCACGAATATGGCGTGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCGAAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGATTCGACGTGTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGTCGTGTCGACTCGTATAGACTCACGTCGATTTGTGTCGACACTGTATCGACTCGTGTCGTGTCGATACGAATCGACACGACACGTGATTCCAAACGCCCTCTTTTGAACGGTAATTTTTGGAGGGAGTTCAATTTTTTTTGAATTCTTTGAAGTTTCGCATTGTTTATCGTCATGATGGCCTATCTTT</canonical>
            <polymorphic>TCTTTAATCTTCAACAAAAAAGTTAAACAGTTACCTTCATTTTCACTTTCCGTTCTTCTCATGGCCCCGCCTAACAAAGTCTCTATTTATGCTTCATTGTTTCTTGGTAATTTTTGTAAAGGGTCATCAATAGGCATGCATCTTTTTTTTTCATTTTTTTTTCTCCTCATATGTCAATCATCAATTTTTCAAATGGCTATCCGTTGGTTCTTCTTCTTCTTCTTTTTTTTTTTTTGGCAGAGAAAATTCGAGAGGATAGGGAATGTGTCTTCGTCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGGAAACAAATTCAACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTKGTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCATCGTCCGTGTGTAGATTGGCTTTAGATTGGTACGTTCTGTACCCATAAGAACTGATATTTTCACGAATATGGCGTGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCGAAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGATTCGACGTGTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGTCGTGTCGACTCGTATAGACTCACGTCGATTTGTGTCGACACTGTATCGACTCGTGTCGTGTCGATACGAATCGACACGACACGTGATTCCAAACGCCCTCTTTTGAACGGTAATTTTTGGAGGGAGTTCAATTTTTTTTGAATTCTTTGAAGTTTCGCATTGTTTATCGTCATGATGGCCTATCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGAATTTTCATAGGTAGCA</pcr_primer_p1>
		<pcr_primer_p2>TCTTATTTTGAAGCCTTATCTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTGGTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCATCGTCCGTGTGTAGATTGGCTTTAGATTGGTACGTTCTGTACCCATAAGAACTGATATTTTCACGAATATGGCGTGAGATAAGGCTTCAAAATAAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTKGTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCATCGTCCGTGTGTAGATTGGCTTTAGATTGGTACGTTCTGTACCCATAAGAACTGATATTTTCACGAATATGGCGTGAGATAAGGCTTCAAAATAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11568</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>376516</contig_pos>
        <strand>+</strand>
        <context>TTTTCTGCAT[C/T]GTCCGTGTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCAT</left_flank>
        <right_flank>GTCCGTGTGTAGATTGGCTTTAGATTGGTACGTTCTGTACCCATAAGAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGCCTAACAAAGTCTCTATTTATGCTTCATTGTTTCTTGGTAATTTTTGTAAAGGGTCATCAATAGGCATGCATCTTTTTTTTTCATTTTTTTTTCTCCTCATATGTCAATCATCAATTTTTCAAATGGCTATCCGTTGGTTCTTCTTCTTCTTCTTTTTTTTTTTTTGGCAGAGAAAATTCGAGAGGATAGGGAATGTGTCTTCGTCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGGAAACAAATTCAACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTGGTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCATCGTCCGTGTGTAGATTGGCTTTAGATTGGTACGTTCTGTACCCATAAGAACTGATATTTTCACGAATATGGCGTGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCGAAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGATTCGACGTGTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGTCGTGTCGACTCGTATAGACTCACGTCGATTTGTGTCGACACTGTATCGACTCGTGTCGTGTCGATACGAATCGACACGACACGTGATTCCAAACGCCCTCTTTTGAACGGTAATTTTTGGAGGGAGTTCAATTTTTTTTGAATTCTTTGAAGTTTCGCATTGTTTATCGTCATGATGGCCTATCTTTTGACTGAAGAATTTTCTAGGCCACTATGCTGAAATGGCCTAGAGAACGTACCAGTCAAATATTATA</canonical>
            <polymorphic>CCGCCTAACAAAGTCTCTATTTATGCTTCATTGTTTCTTGGTAATTTTTGTAAAGGGTCATCAATAGGCATGCATCTTTTTTTTTCATTTTTTTTTCTCCTCATATGTCAATCATCAATTTTTCAAATGGCTATCCGTTGGTTCTTCTTCTTCTTCTTTTTTTTTTTTTGGCAGAGAAAATTCGAGAGGATAGGGAATGTGTCTTCGTCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGGAAACAAATTCAACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTGGTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCATYGTCCGTGTGTAGATTGGCTTTAGATTGGTACGTTCTGTACCCATAAGAACTGATATTTTCACGAATATGGCGTGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCGAAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGATTCGACGTGTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGTCGTGTCGACTCGTATAGACTCACGTCGATTTGTGTCGACACTGTATCGACTCGTGTCGTGTCGATACGAATCGACACGACACGTGATTCCAAACGCCCTCTTTTGAACGGTAATTTTTGGAGGGAGTTCAATTTTTTTTGAATTCTTTGAAGTTTCGCATTGTTTATCGTCATGATGGCCTATCTTTTGACTGAAGAATTTTCTAGGCCACTATGCTGAAATGGCCTAGAGAACGTACCAGTCAAATATTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGAATTTTCATAGGTAGCA</pcr_primer_p1>
		<pcr_primer_p2>TCTTATTTTGAAGCCTTATCTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTGGTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCATCGTCCGTGTGTAGATTGGCTTTAGATTGGTACGTTCTGTACCCATAAGAACTGATATTTTCACGAATATGGCGTGAGATAAGGCTTCAAAATAAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTGGTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCATYGTCCGTGTGTAGATTGGCTTTAGATTGGTACGTTCTGTACCCATAAGAACTGATATTTTCACGAATATGGCGTGAGATAAGGCTTCAAAATAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11569</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>376577</contig_pos>
        <strand>+</strand>
        <context>TGATATTTTC[A/C]CGAATATGGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGATTGGCTTTAGATTGGTACGTTCTGTACCCATAAGAACTGATATTTTC</left_flank>
        <right_flank>CGAATATGGCGTGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATAGGCATGCATCTTTTTTTTTCATTTTTTTTTCTCCTCATATGTCAATCATCAATTTTTCAAATGGCTATCCGTTGGTTCTTCTTCTTCTTCTTTTTTTTTTTTTGGCAGAGAAAATTCGAGAGGATAGGGAATGTGTCTTCGTCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGGAAACAAATTCAACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTGGTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCATCGTCCGTGTGTAGATTGGCTTTAGATTGGTACGTTCTGTACCCATAAGAACTGATATTTTCACGAATATGGCGTGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCGAAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGATTCGACGTGTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGTCGTGTCGACTCGTATAGACTCACGTCGATTTGTGTCGACACTGTATCGACTCGTGTCGTGTCGATACGAATCGACACGACACGTGATTCCAAACGCCCTCTTTTGAACGGTAATTTTTGGAGGGAGTTCAATTTTTTTTGAATTCTTTGAAGTTTCGCATTGTTTATCGTCATGATGGCCTATCTTTTGACTGAAGAATTTTCTAGGCCACTATGCTGAAATGGCCTAGAGAACGTACCAGTCAAATATTATACCGTTTCTGAGCCAATGATACATGGTGGCCTAACTTTTTCATTCTAGGCCATCGCATAAAA</canonical>
            <polymorphic>CAATAGGCATGCATCTTTTTTTTTCATTTTTTTTTCTCCTCATATGTCAATCATCAATTTTTCAAATGGCTATCCGTTGGTTCTTCTTCTTCTTCTTTTTTTTTTTTTGGCAGAGAAAATTCGAGAGGATAGGGAATGTGTCTTCGTCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGGAAACAAATTCAACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTGGTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCATCGTCCGTGTGTAGATTGGCTTTAGATTGGTACGTTCTGTACCCATAAGAACTGATATTTTCMCGAATATGGCGTGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCGAAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGATTCGACGTGTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGTCGTGTCGACTCGTATAGACTCACGTCGATTTGTGTCGACACTGTATCGACTCGTGTCGTGTCGATACGAATCGACACGACACGTGATTCCAAACGCCCTCTTTTGAACGGTAATTTTTGGAGGGAGTTCAATTTTTTTTGAATTCTTTGAAGTTTCGCATTGTTTATCGTCATGATGGCCTATCTTTTGACTGAAGAATTTTCTAGGCCACTATGCTGAAATGGCCTAGAGAACGTACCAGTCAAATATTATACCGTTTCTGAGCCAATGATACATGGTGGCCTAACTTTTTCATTCTAGGCCATCGCATAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>140 125 103 70 54 53 52 48 46 45 43 34 22 18 17 16 15 13 13 12 12 10 10 6 5 5 5 4 2 2</canonical_bands>
                <polymorphic_bands>140 125 103 70 65 54 53 48 46 45 43 34 22 18 17 16 15 13 12 12 10 10 6 5 5 5 4 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGTGTAGATTGGCTTTAGATTG</pcr_primer_p1>
		<pcr_primer_p2>AAAATTACCGTTCAAAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>360</pcr_amplicon_size>
		<canonical_amplicon>GTGTGTAGATTGGCTTTAGATTGGTACGTTCTGTACCCATAAGAACTGATATTTTCACGAATATGGCGTGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCGAAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGATTCGACGTGTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGTCGTGTCGACTCGTATAGACTCACGTCGATTTGTGTCGACACTGTATCGACTCGTGTCGTGTCGATACGAATCGACACGACACGTGATTCCAAACGCCCTCTTTTGAACGGTAATTTT</canonical_amplicon>
		<polymorphic_amplicon>GTGTGTAGATTGGCTTTAGATTGGTACGTTCTGTACCCATAAGAACTGATATTTTCMCGAATATGGCGTGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCGAAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGATTCGACGTGTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGTCGTGTCGACTCGTATAGACTCACGTCGATTTGTGTCGACACTGTATCGACTCGTGTCGTGTCGATACGAATCGACACGACACGTGATTCCAAACGCCCTCTTTTGAACGGTAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11570</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>451095</contig_pos>
        <strand>+</strand>
        <context>ATTCAATTTT[C/T]TCTGAAAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAAAAAACTACAGTAATCCACAAAAAATGGTTTTGACCAATTCAATTTT</left_flank>
        <right_flank>TCTGAAAATTTGAGTCCGTTTCATTTTTCACTGTATTCCTCACATTTTAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTTAGAAGCCCGCTCAAACCGTCACGTTTGAGCTTAATTATCTCAAAATCTACGAAAGACAGTCAAAATTTGTCAACTGATGAATTGTTTATCATAATATCAACAATATTTTATTAATTGACAAATTTGTGATATCTTCCATACGAAGTAAGATAATTGAGCTCAAAGTTGACGGTTTATTGTGGACTTCCATCAGAGCAAATATGGTATTTTGGTTTTTGTGAAAATACAGTATTTTGGTTTTTACGGTTCAAAAAATGTTTACCTTGCAAAATATTTTTAATAAAATTATACTTTTTTTTTCCAGATGACTACATTCCCCTATTTCTAACAGAAAACGAGAGAAATTAGCTCAAAAGGGACAGTTAGGGACTAGAGAAATACAGAAAATTGTGTTAAACCAGATTTGAACTAAGTTTTTGACAAAAAATGCAATTTGCCTTCATTCCAAAAAACTACAGTAATCCACAAAAAATGGTTTTGACCAATTCAATTTTCTCTGAAAATTTGAGTCCGTTTCATTTTTCACTGTATTCCTCACATTTTAACAAAATCCCTCATTCCAATAGAATCATTCTATATTTCATCAAACTCTCCAAAAACTATTAAAACCCAATGAACACTCAAAACTTCTATTATTAAATCAAGGATTACCAGACTCCTTGAATTTCTTAGGGGTTTCATTTGAGAGTCATGTTTCAATAGAAGAAGAGGGAAAGATTCCTAACAGAGATAAGGATCTGTACGCATGTTTGCGAAATGAGTTTACCGAAAGGTATTAGGGTGTGATTAGTTAGAAGCAAAGCTTTATTTTTCGAAAAAGGGAGGAGGAGCGGAAAAGACAAAGAGTTGCGGCGAATGATCATATTCCGAAGCTCATTTTTCATTGGTACAACCGGACAGTGGGACCCCCAAAATGATACTCACCCCTTTTTTCAAAAGGGGGGACCTTCTCAAGAAAACAAAAAAGATATTTAGATGAGAAGAGGTTTGATTGA</canonical>
            <polymorphic>TCCTTAGAAGCCCGCTCAAACCGTCACGTTTGAGCTTAATTATCTCAAAATCTACGAAAGACAGTCAAAATTTGTCAACTGATGAATTGTTTATCATAATATCAACAATATTTTATTAATTGACAAATTTGTGATATCTTCCATACGAAGTAAGATAATTGAGCTCAAAGTTGACGGTTTATTGTGGACTTCCATCAGAGCAAATATGGTATTTTGGTTTTTGTGAAAATACAGTATTTTGGTTTTTACGGTTCAAAAAATGTTTACCTTGCAAAATATTTTTAATAAAATTATACTTTTTTTTTCCAGATGACTACATTCCCCTATTTCTAACAGAAAACGAGAGAAATTAGCTCAAAAGGGACAGTTAGGGACTAGAGAAATACAGAAAATTGTGTTAAACCAGATTTGAACTAAGTTTTTGACAAAAAATGCAATTTGCCTTCATTCCAAAAAACTACAGTAATCCACAAAAAATGGTTTTGACCAATTCAATTTTYTCTGAAAATTTGAGTCCGTTTCATTTTTCACTGTATTCCTCACATTTTAACAAAATCCCTCATTCCAATAGAATCATTCTATATTTCATCAAACTCTCCAAAAACTATTAAAACCCAATGAACACTCAAAACTTCTATTATTAAATCAAGGATTACCAGACTCCTTGAATTTCTTAGGGGTTTCATTTGAGAGTCATGTTTCAATAGAAGAAGAGGGAAAGATTCCTAACAGAGATAAGGATCTGTACGCATGTTTGCGAAATGAGTTTACCGAAAGGTATTAGGGTGTGATTAGTTAGAAGCAAAGCTTTATTTTTCGAAAAAGGGAGGAGGAGCGGAAAAGACAAAGAGTTGCGGCGAATGATCATATTCCGAAGCTCATTTTTCATTGGTACAACCGGACAGTGGGACCCCCAAAATGATACTCACCCCTTTTTTCAAAAGGGGGGACCTTCTCAAGAAAACAAAAAAGATATTTAGATGAGAAGAGGTTTGATTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGACAGTTAGGGACTAGAGAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATAGTTTTTGGAGAGTTTGATGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGACAGTTAGGGACTAGAGAAATACAGAAAATTGTGTTAAACCAGATTTGAACTAAGTTTTTGACAAAAAATGCAATTTGCCTTCATTCCAAAAAACTACAGTAATCCACAAAAAATGGTTTTGACCAATTCAATTTTCTCTGAAAATTTGAGTCCGTTTCATTTTTCACTGTATTCCTCACATTTTAACAAAATCCCTCATTCCAATAGAATCATTCTATATTTCATCAAACTCTCCAAAAACTAT</canonical_amplicon>
		<polymorphic_amplicon>GGACAGTTAGGGACTAGAGAAATACAGAAAATTGTGTTAAACCAGATTTGAACTAAGTTTTTGACAAAAAATGCAATTTGCCTTCATTCCAAAAAACTACAGTAATCCACAAAAAATGGTTTTGACCAATTCAATTTTYTCTGAAAATTTGAGTCCGTTTCATTTTTCACTGTATTCCTCACATTTTAACAAAATCCCTCATTCCAATAGAATCATTCTATATTTCATCAAACTCTCCAAAAACTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11571</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>451155</contig_pos>
        <strand></strand>
        <context>ACAAAATCCC[T/C]YATTCCAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTGAGTCCGTTTCATTTTTCACTGTATTCCTCACATTTTAACAAAATCCC</left_flank>
        <right_flank>CATTCCAATAGAATCATTCTATATTTCATCAAACTCTCCAAAAACTATTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGTCAAAATTTGTCAACTGATGAATTGTTTATCATAATATCAACAATATTTTATTAATTGACAAATTTGTGATATCTTCCATACGAAGTAAGATAATTGAGCTCAAAGTTGACGGTTTATTGTGGACTTCCATCAGAGCAAATATGGTATTTTGGTTTTTGTGAAAATACAGTATTTTGGTTTTTACGGTTCAAAAAATGTTTACCTTGCAAAATATTTTTAATAAAATTATACTTTTTTTTTCCAGATGACTACATTCCCCTATTTCTAACAGAAAACGAGAGAAATTAGCTCAAAAGGGACAGTTAGGGACTAGAGAAATACAGAAAATTGTGTTAAACCAGATTTGAACTAAGTTTTTGACAAAAAATGCAATTTGCCTTCATTCCAAAAAACTACAGTAATCCACAAAAAATGGTTTTGACCAATTCAATTTTCTCTGAAAATTTGAGTCCGTTTCATTTTTCACTGTATTCCTCACATTTTAACAAAATCCCTCATTCCAATAGAATCATTCTATATTTCATCAAACTCTCCAAAAACTATTAAAACCCAATGAACACTCAAAACTTCTATTATTAAATCAAGGATTACCAGACTCCTTGAATTTCTTAGGGGTTTCATTTGAGAGTCATGTTTCAATAGAAGAAGAGGGAAAGATTCCTAACAGAGATAAGGATCTGTACGCATGTTTGCGAAATGAGTTTACCGAAAGGTATTAGGGTGTGATTAGTTAGAAGCAAAGCTTTATTTTTCGAAAAAGGGAGGAGGAGCGGAAAAGACAAAGAGTTGCGGCGAATGATCATATTCCGAAGCTCATTTTTCATTGGTACAACCGGACAGTGGGACCCCCAAAATGATACTCACCCCTTTTTTCAAAAGGGGGGACCTTCTCAAGAAAACAAAAAAGATATTTAGATGAGAAGAGGTTTGATTGATTTACATGTTTTTGGTAAGAACTGACACATATTAGGTTGTCAGGAAGCACGACATGAGAC</canonical>
            <polymorphic>ACAGTCAAAATTTGTCAACTGATGAATTGTTTATCATAATATCAACAATATTTTATTAATTGACAAATTTGTGATATCTTCCATACGAAGTAAGATAATTGAGCTCAAAGTTGACGGTTTATTGTGGACTTCCATCAGAGCAAATATGGTATTTTGGTTTTTGTGAAAATACAGTATTTTGGTTTTTACGGTTCAAAAAATGTTTACCTTGCAAAATATTTTTAATAAAATTATACTTTTTTTTTCCAGATGACTACATTCCCCTATTTCTAACAGAAAACGAGAGAAATTAGCTCAAAAGGGACAGTTAGGGACTAGAGAAATACAGAAAATTGTGTTAAACCAGATTTGAACTAAGTTTTTGACAAAAAATGCAATTTGCCTTCATTCCAAAAAACTACAGTAATCCACAAAAAATGGTTTTGACCAATTCAATTTTCTCTGAAAATTTGAGTCCGTTTCATTTTTCACTGTATTCCTCACATTTTAACAAAATCCCYCATTCCAATAGAATCATTCTATATTTCATCAAACTCTCCAAAAACTATTAAAACCCAATGAACACTCAAAACTTCTATTATTAAATCAAGGATTACCAGACTCCTTGAATTTCTTAGGGGTTTCATTTGAGAGTCATGTTTCAATAGAAGAAGAGGGAAAGATTCCTAACAGAGATAAGGATCTGTACGCATGTTTGCGAAATGAGTTTACCGAAAGGTATTAGGGTGTGATTAGTTAGAAGCAAAGCTTTATTTTTCGAAAAAGGGAGGAGGAGCGGAAAAGACAAAGAGTTGCGGCGAATGATCATATTCCGAAGCTCATTTTTCATTGGTACAACCGGACAGTGGGACCCCCAAAATGATACTCACCCCTTTTTTCAAAAGGGGGGACCTTCTCAAGAAAACAAAAAAGATATTTAGATGAGAAGAGGTTTGATTGATTTACATGTTTTTGGTAAGAACTGACACATATTAGGTTGTCAGGAAGCACGACATGAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGGGACTAGAGAAATACAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>GGGTTTTAATAGTTTTTGGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTAGGGACTAGAGAAATACAGAAAATTGTGTTAAACCAGATTTGAACTAAGTTTTTGACAAAAAATGCAATTTGCCTTCATTCCAAAAAACTACAGTAATCCACAAAAAATGGTTTTGACCAATTCAATTTTCTCTGAAAATTTGAGTCCGTTTCATTTTTCACTGTATTCCTCACATTTTAACAAAATCCCTCATTCCAATAGAATCATTCTATATTTCATCAAACTCTCCAAAAACTATTAAAACCC</canonical_amplicon>
		<polymorphic_amplicon>TTAGGGACTAGAGAAATACAGAAAATTGTGTTAAACCAGATTTGAACTAAGTTTTTGACAAAAAATGCAATTTGCCTTCATTCCAAAAAACTACAGTAATCCACAAAAAATGGTTTTGACCAATTCAATTTTCTCTGAAAATTTGAGTCCGTTTCATTTTTCACTGTATTCCTCACATTTTAACAAAATCCCYCATTCCAATAGAATCATTCTATATTTCATCAAACTCTCCAAAAACTATTAAAACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11572</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>451231</contig_pos>
        <strand>+</strand>
        <context>TCAAAACTTC[C/T]ATTATTAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATCAAACTCTCCAAAAACTATTAAAACCCAATGAACACTCAAAACTTC</left_flank>
        <right_flank>ATTATTAAATCAAGGATTACCAGACTCCTTGAATTTCTTAGGGGTTTCAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCCATACGAAGTAAGATAATTGAGCTCAAAGTTGACGGTTTATTGTGGACTTCCATCAGAGCAAATATGGTATTTTGGTTTTTGTGAAAATACAGTATTTTGGTTTTTACGGTTCAAAAAATGTTTACCTTGCAAAATATTTTTAATAAAATTATACTTTTTTTTTCCAGATGACTACATTCCCCTATTTCTAACAGAAAACGAGAGAAATTAGCTCAAAAGGGACAGTTAGGGACTAGAGAAATACAGAAAATTGTGTTAAACCAGATTTGAACTAAGTTTTTGACAAAAAATGCAATTTGCCTTCATTCCAAAAAACTACAGTAATCCACAAAAAATGGTTTTGACCAATTCAATTTTCTCTGAAAATTTGAGTCCGTTTCATTTTTCACTGTATTCCTCACATTTTAACAAAATCCCTCATTCCAATAGAATCATTCTATATTTCATCAAACTCTCCAAAAACTATTAAAACCCAATGAACACTCAAAACTTCTATTATTAAATCAAGGATTACCAGACTCCTTGAATTTCTTAGGGGTTTCATTTGAGAGTCATGTTTCAATAGAAGAAGAGGGAAAGATTCCTAACAGAGATAAGGATCTGTACGCATGTTTGCGAAATGAGTTTACCGAAAGGTATTAGGGTGTGATTAGTTAGAAGCAAAGCTTTATTTTTCGAAAAAGGGAGGAGGAGCGGAAAAGACAAAGAGTTGCGGCGAATGATCATATTCCGAAGCTCATTTTTCATTGGTACAACCGGACAGTGGGACCCCCAAAATGATACTCACCCCTTTTTTCAAAAGGGGGGACCTTCTCAAGAAAACAAAAAAGATATTTAGATGAGAAGAGGTTTGATTGATTTACATGTTTTTGGTAAGAACTGACACATATTAGGTTGTCAGGAAGCACGACATGAGACCCCTAGGAACATAACTACGGGGTTTTGATTTGAGATTCATTGCTACCTGTGTACGGGTATAATTCTTATTCCCCAT</canonical>
            <polymorphic>TCTTCCATACGAAGTAAGATAATTGAGCTCAAAGTTGACGGTTTATTGTGGACTTCCATCAGAGCAAATATGGTATTTTGGTTTTTGTGAAAATACAGTATTTTGGTTTTTACGGTTCAAAAAATGTTTACCTTGCAAAATATTTTTAATAAAATTATACTTTTTTTTTCCAGATGACTACATTCCCCTATTTCTAACAGAAAACGAGAGAAATTAGCTCAAAAGGGACAGTTAGGGACTAGAGAAATACAGAAAATTGTGTTAAACCAGATTTGAACTAAGTTTTTGACAAAAAATGCAATTTGCCTTCATTCCAAAAAACTACAGTAATCCACAAAAAATGGTTTTGACCAATTCAATTTTCTCTGAAAATTTGAGTCCGTTTCATTTTTCACTGTATTCCTCACATTTTAACAAAATCCCTCATTCCAATAGAATCATTCTATATTTCATCAAACTCTCCAAAAACTATTAAAACCCAATGAACACTCAAAACTTCYATTATTAAATCAAGGATTACCAGACTCCTTGAATTTCTTAGGGGTTTCATTTGAGAGTCATGTTTCAATAGAAGAAGAGGGAAAGATTCCTAACAGAGATAAGGATCTGTACGCATGTTTGCGAAATGAGTTTACCGAAAGGTATTAGGGTGTGATTAGTTAGAAGCAAAGCTTTATTTTTCGAAAAAGGGAGGAGGAGCGGAAAAGACAAAGAGTTGCGGCGAATGATCATATTCCGAAGCTCATTTTTCATTGGTACAACCGGACAGTGGGACCCCCAAAATGATACTCACCCCTTTTTTCAAAAGGGGGGACCTTCTCAAGAAAACAAAAAAGATATTTAGATGAGAAGAGGTTTGATTGATTTACATGTTTTTGGTAAGAACTGACACATATTAGGTTGTCAGGAAGCACGACATGAGACCCCTAGGAACATAACTACGGGGTTTTGATTTGAGATTCATTGCTACCTGTGTACGGGTATAATTCTTATTCCCCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTATTCCTCACATTTTAACAAA</pcr_primer_p1>
		<pcr_primer_p2>ATACCTTTCGGTAAACTCATTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTGTATTCCTCACATTTTAACAAAATCCCTCATTCCAATAGAATCATTCTATATTTCATCAAACTCTCCAAAAACTATTAAAACCCAATGAACACTCAAAACTTCTATTATTAAATCAAGGATTACCAGACTCCTTGAATTTCTTAGGGGTTTCATTTGAGAGTCATGTTTCAATAGAAGAAGAGGGAAAGATTCCTAACAGAGATAAGGATCTGTACGCATGTTTGCGAAATGAGTTTACCGAAAGGTAT</canonical_amplicon>
		<polymorphic_amplicon>CTGTATTCCTCACATTTTAACAAAATCCCTCATTCCAATAGAATCATTCTATATTTCATCAAACTCTCCAAAAACTATTAAAACCCAATGAACACTCAAAACTTCYATTATTAAATCAAGGATTACCAGACTCCTTGAATTTCTTAGGGGTTTCATTTGAGAGTCATGTTTCAATAGAAGAAGAGGGAAAGATTCCTAACAGAGATAAGGATCTGTACGCATGTTTGCGAAATGAGTTTACCGAAAGGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11573</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>453069</contig_pos>
        <strand>+</strand>
        <context>TAATTTTWAT[A/T]ATTCACTTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACACTAGGTTTTGTGTTCTGAGCCGTTAATAAACTCTTAATAATTTTAAT</left_flank>
        <right_flank>ATTCACTTGCAAAGAAGTGAATTTTGATGACGTCTTTGAGAGGGTGAGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCACACGTTTTTATGTGTGCTTGTCATACCAAATGTGTGTGTGCCCCTCCCCCTCTTTTATTTGGATACCCCTCTTGAAAAAGGTCCCACGACTCCTTTCAGCGTTTTTCCCAAAAGTTACAGTTTTAAAGACGTTATGGTAGGTCAATTCAATTTAAAAAGTTGGAGAGAAAGGGAAGAAATAAAAATAGTGGGGTCCCTTATGCAAATCCGGTTTCTCGCGCCCCAATTTCGCACTTCTCACCTCCTTTCGCCAATTGGGAGCCGGGGATAAATGGCTGTGAAAGCATGACCCCACTACTGAACACTTTTTCTCTCAAACATTTTAGGTGACGCTTCGTTTAGCCTGTGATGTGTGTTGTTTTTTTCGCCTAAATGTCATTTGTTTCAATAAAATTCTCTTATCTACAGTAAGAGTTTCTTAGGTCTCGCGCCCGGAGTCAGGTCACACTAGGTTTTGTGTTCTGAGCCGTTAATAAACTCTTAATAATTTTAATAATTCACTTGCAAAGAAGTGAATTTTGATGACGTCTTTGAGAGGGTGAGTAGTTTCGAAAAATATGTTTGTGAGTAATTTGATTAAAATCATCACAGATGAATTTTTGATAAAATGTCTTCCTACATCTTTAAATTAAGCCATCTTATACATGTATTTTAAGCTCAATTATCTCAATTCCTGCGAGAGATATCAAATATTGGCCAACTAATAAAATGTTAGTAATGTTATGTCAAACGTTTTGTCAGTTGATAACTTTTATATATATCTATATATATATATAAATATCACAGATACCGATATAATTGAGCTCAAAGTTTTTGTACAAGATGAGATTAGAGCATGAACGGTATCTATCGTATTTTCTCTAATAGAAACCCATCAAATACGTGCACTTTAAGCTTAATTATCTCGGTTCTTCAAACAGACATCAAAAACTTCTTAAGTAATGAAATATTAGTGATTTTTTGACAAACATTTTAACAGTTTTCAGTTTTTCGAT</canonical>
            <polymorphic>TTTCACACGTTTTTATGTGTGCTTGTCATACCAAATGTGTGTGTGCCCCTCCCCCTCTTTTATTTGGATACCCCTCTTGAAAAAGGTCCCACGACTCCTTTCAGCGTTTTTCCCAAAAGTTACAGTTTTAAAGACGTTATGGTAGGTCAATTCAATTTAAAAAGTTGGAGAGAAAGGGAAGAAATAAAAATAGTGGGGTCCCTTATGCAAATCCGGTTTCTCGCGCCCCAATTTCGCACTTCTCACCTCCTTTCGCCAATTGGGAGCCGGGGATAAATGGCTGTGAAAGCATGACCCCACTACTGAACACTTTTTCTCTCAAACATTTTAGGTGACGCTTCGTTTAGCCTGTGATGTGTGTTGTTTTTTTCGCCTAAATGTCATTTGTTTCAATAAAATTCTCTTATCTACAGTAAGAGTTTCTTAGGTCTCGCGCCCGGAGTCAGGTCACACTAGGTTTTGTGTTCTGAGCCGTTAATAAACTCTTAATAATTTTAATWATTCACTTGCAAAGAAGTGAATTTTGATGACGTCTTTGAGAGGGTGAGTAGTTTCGAAAAATATGTTTGTGAGTAATTTGATTAAAATCATCACAGATGAATTTTTGATAAAATGTCTTCCTACATCTTTAAATTAAGCCATCTTATACATGTATTTTAAGCTCAATTATCTCAATTCCTGCGAGAGATATCAAATATTGGCCAACTAATAAAATGTTAGTAATGTTATGTCAAACGTTTTGTCAGTTGATAACTTTTATATATATCTATATATATATATAAATATCACAGATACCGATATAATTGAGCTCAAAGTTTTTGTACAAGATGAGATTAGAGCATGAACGGTATCTATCGTATTTTCTCTAATAGAAACCCATCAAATACGTGCACTTTAAGCTTAATTATCTCGGTTCTTCAAACAGACATCAAAAACTTCTTAAGTAATGAAATATTAGTGATTTTTTGACAAACATTTTAACAGTTTTCAGTTTTTCGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>148 139 128 101 98 94 76 55 33 32 28 25 20 9 9 5</canonical_bands>
                <polymorphic_bands>148 139 128 101 98 94 76 55 33 32 29 28 25 9 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACACTTTTTCTCTCAAACATT</pcr_primer_p1>
		<pcr_primer_p2>AAACTACTCACCCTCTCAAAGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAACACTTTTTCTCTCAAACATTTTAGGTGACGCTTCGTTTAGCCTGTGATGTGTGTTGTTTTTTTCGCCTAAATGTCATTTGTTTCAATAAAATTCTCTTATCTACAGTAAGAGTTTCTTAGGTCTCGCGCCCGGAGTCAGGTCACACTAGGTTTTGTGTTCTGAGCCGTTAATAAACTCTTAATAATTTTAATAATTCACTTGCAAAGAAGTGAATTTTGATGACGTCTTTGAGAGGGTGAGTAGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAACACTTTTTCTCTCAAACATTTTAGGTGACGCTTCGTTTAGCCTGTGATGTGTGTTGTTTTTTTCGCCTAAATGTCATTTGTTTCAATAAAATTCTCTTATCTACAGTAAGAGTTTCTTAGGTCTCGCGCCCGGAGTCAGGTCACACTAGGTTTTGTGTTCTGAGCCGTTAATAAACTCTTAATAATTTTAATWATTCACTTGCAAAGAAGTGAATTTTGATGACGTCTTTGAGAGGGTGAGTAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11574</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>453066</contig_pos>
        <strand>+</strand>
        <context>TAATAATTTT[A/T]ATWATTCACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCACACTAGGTTTTGTGTTCTGAGCCGTTAATAAACTCTTAATAATTTT</left_flank>
        <right_flank>ATAATTCACTTGCAAAGAAGTGAATTTTGATGACGTCTTTGAGAGGGTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATTTCACACGTTTTTATGTGTGCTTGTCATACCAAATGTGTGTGTGCCCCTCCCCCTCTTTTATTTGGATACCCCTCTTGAAAAAGGTCCCACGACTCCTTTCAGCGTTTTTCCCAAAAGTTACAGTTTTAAAGACGTTATGGTAGGTCAATTCAATTTAAAAAGTTGGAGAGAAAGGGAAGAAATAAAAATAGTGGGGTCCCTTATGCAAATCCGGTTTCTCGCGCCCCAATTTCGCACTTCTCACCTCCTTTCGCCAATTGGGAGCCGGGGATAAATGGCTGTGAAAGCATGACCCCACTACTGAACACTTTTTCTCTCAAACATTTTAGGTGACGCTTCGTTTAGCCTGTGATGTGTGTTGTTTTTTTCGCCTAAATGTCATTTGTTTCAATAAAATTCTCTTATCTACAGTAAGAGTTTCTTAGGTCTCGCGCCCGGAGTCAGGTCACACTAGGTTTTGTGTTCTGAGCCGTTAATAAACTCTTAATAATTTTAATAATTCACTTGCAAAGAAGTGAATTTTGATGACGTCTTTGAGAGGGTGAGTAGTTTCGAAAAATATGTTTGTGAGTAATTTGATTAAAATCATCACAGATGAATTTTTGATAAAATGTCTTCCTACATCTTTAAATTAAGCCATCTTATACATGTATTTTAAGCTCAATTATCTCAATTCCTGCGAGAGATATCAAATATTGGCCAACTAATAAAATGTTAGTAATGTTATGTCAAACGTTTTGTCAGTTGATAACTTTTATATATATCTATATATATATATAAATATCACAGATACCGATATAATTGAGCTCAAAGTTTTTGTACAAGATGAGATTAGAGCATGAACGGTATCTATCGTATTTTCTCTAATAGAAACCCATCAAATACGTGCACTTTAAGCTTAATTATCTCGGTTCTTCAAACAGACATCAAAAACTTCTTAAGTAATGAAATATTAGTGATTTTTTGACAAACATTTTAACAGTTTTCAGTTTTTC</canonical>
            <polymorphic>CAATTTCACACGTTTTTATGTGTGCTTGTCATACCAAATGTGTGTGTGCCCCTCCCCCTCTTTTATTTGGATACCCCTCTTGAAAAAGGTCCCACGACTCCTTTCAGCGTTTTTCCCAAAAGTTACAGTTTTAAAGACGTTATGGTAGGTCAATTCAATTTAAAAAGTTGGAGAGAAAGGGAAGAAATAAAAATAGTGGGGTCCCTTATGCAAATCCGGTTTCTCGCGCCCCAATTTCGCACTTCTCACCTCCTTTCGCCAATTGGGAGCCGGGGATAAATGGCTGTGAAAGCATGACCCCACTACTGAACACTTTTTCTCTCAAACATTTTAGGTGACGCTTCGTTTAGCCTGTGATGTGTGTTGTTTTTTTCGCCTAAATGTCATTTGTTTCAATAAAATTCTCTTATCTACAGTAAGAGTTTCTTAGGTCTCGCGCCCGGAGTCAGGTCACACTAGGTTTTGTGTTCTGAGCCGTTAATAAACTCTTAATAATTTTWATAATTCACTTGCAAAGAAGTGAATTTTGATGACGTCTTTGAGAGGGTGAGTAGTTTCGAAAAATATGTTTGTGAGTAATTTGATTAAAATCATCACAGATGAATTTTTGATAAAATGTCTTCCTACATCTTTAAATTAAGCCATCTTATACATGTATTTTAAGCTCAATTATCTCAATTCCTGCGAGAGATATCAAATATTGGCCAACTAATAAAATGTTAGTAATGTTATGTCAAACGTTTTGTCAGTTGATAACTTTTATATATATCTATATATATATATAAATATCACAGATACCGATATAATTGAGCTCAAAGTTTTTGTACAAGATGAGATTAGAGCATGAACGGTATCTATCGTATTTTCTCTAATAGAAACCCATCAAATACGTGCACTTTAAGCTTAATTATCTCGGTTCTTCAAACAGACATCAAAAACTTCTTAAGTAATGAAATATTAGTGATTTTTTGACAAACATTTTAACAGTTTTCAGTTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>318 238 131 87 47 39 38 29 23 19 11 9 6 5</canonical_bands>
                <polymorphic_bands>318 238 131 96 47 39 38 29 23 19 11 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACACTTTTTCTCTCAAACATT</pcr_primer_p1>
		<pcr_primer_p2>AAACTACTCACCCTCTCAAAGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAACACTTTTTCTCTCAAACATTTTAGGTGACGCTTCGTTTAGCCTGTGATGTGTGTTGTTTTTTTCGCCTAAATGTCATTTGTTTCAATAAAATTCTCTTATCTACAGTAAGAGTTTCTTAGGTCTCGCGCCCGGAGTCAGGTCACACTAGGTTTTGTGTTCTGAGCCGTTAATAAACTCTTAATAATTTTAATAATTCACTTGCAAAGAAGTGAATTTTGATGACGTCTTTGAGAGGGTGAGTAGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAACACTTTTTCTCTCAAACATTTTAGGTGACGCTTCGTTTAGCCTGTGATGTGTGTTGTTTTTTTCGCCTAAATGTCATTTGTTTCAATAAAATTCTCTTATCTACAGTAAGAGTTTCTTAGGTCTCGCGCCCGGAGTCAGGTCACACTAGGTTTTGTGTTCTGAGCCGTTAATAAACTCTTAATAATTTTWATAATTCACTTGCAAAGAAGTGAATTTTGATGACGTCTTTGAGAGGGTGAGTAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11576</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>457653</contig_pos>
        <strand>+</strand>
        <context>CTTGAGACTT[C/T]ACAGATGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGAGACATAGATTCGGTATATGTACACTGTTGTGCTAGTCTTGAGACTT</left_flank>
        <right_flank>ACAGATGTTTCGAAAAAGGTCTATTTTTGCTGAAAAATTCAATTTTCTAG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACCTGTTCGTCTTTCCTCAGCACCCTTTAATTTGCCATGTGTGTTTCTCAAGTACCTTTTCGTTTCAAACAAACGGTATTGTTTGGTATAATGGCTCATTTTCATGTCGGTCTCATCATCATCGCCACCCATTTTCGGAGAATGGGTCACCCAAAAAGCAGCACGGCGAACCTCTCAATCAAACGCTTGTCGTGTCACTCCAATAATAGCATTCGGTGTGGAAGAAGAAGAAGGAGCAGCCGTTTCTTCTTCTTCTTCTTCATCATCATCTTTTCATGTCGTTGTCTCAACACGACATTTATTTCATATTTGAGACAGGCACCTCATAAAACTGCTCATCATGTTTTGAGGAACCCCTCGATTTGTGTTCGTGTGTAGTTTTGAATCTGTTAGCCAATTCAGAATCTTACAGGTTTTCGTCAGCTGGTCAGCTGGTAGAAAAAAAAGCCGAGACATAGATTCGGTATATGTACACTGTTGTGCTAGTCTTGAGACTTTACAGATGTTTCGAAAAAGGTCTATTTTTGCTGAAAAATTCAATTTTCTAGTTAAATTTTAATATTGTAACTGTTTTCCATGATGTGAATTTAAAAAAAGATATTGCTGAAAGGTTGAGAGCGGATATTTTGTCAAATTTGTTTTAAAGGTGCAAGAGCGAACTACCGTTTCTTTTGATCTTATTTTAAAGTATTATTTCCTATATTTTCTTTTTCACCAATATACAATTTTAAAAAAACGGTGATACTTTTCGAAAAATCGAAAAATTAGGAGAATAATATTCAAAAATGTGTTCGAAAAATACGATAGTTTGCTATAGCCTTTTCTAAAAAAATTTTAACGAGATTTTCGAAAAACTCGTATTTTCAGATTCCGAGCCTACAAAATTTGTTTAGTATTTTCAATTTTAAGCCCTAAAATGGCATTTCCATTTTTGGAAAATAAAGTTCCTCTTAGGAGAAATTCCATAAAAAATTTTTGCGAATTTTTTTTTAATATTT</canonical>
            <polymorphic>TCACCTGTTCGTCTTTCCTCAGCACCCTTTAATTTGCCATGTGTGTTTCTCAAGTACCTTTTCGTTTCAAACAAACGGTATTGTTTGGTATAATGGCTCATTTTCATGTCGGTCTCATCATCATCGCCACCCATTTTCGGAGAATGGGTCACCCAAAAAGCAGCACGGCGAACCTCTCAATCAAACGCTTGTCGTGTCACTCCAATAATAGCATTCGGTGTGGAAGAAGAAGAAGGAGCAGCCGTTTCTTCTTCTTCTTCTTCATCATCATCTTTTCATGTCGTTGTCTCAACACGACATTTATTTCATATTTGAGACAGGCACCTCATAAAACTGCTCATCATGTTTTGAGGAACCCCTCGATTTGTGTTCGTGTGTAGTTTTGAATCTGTTAGCCAATTCAGAATCTTACAGGTTTTCGTCAGCTGGTCAGCTGGTAGAAAAAAAAGCCGAGACATAGATTCGGTATATGTACACTGTTGTGCTAGTCTTGAGACTTYACAGATGTTTCGAAAAAGGTCTATTTTTGCTGAAAAATTCAATTTTCTAGTTAAATTTTAATATTGTAACTGTTTTCCATGATGTGAATTTAAAAAAAGATATTGCTGAAAGGTTGAGAGCGGATATTTTGTCAAATTTGTTTTAAAGGTGCAAGAGCGAACTACCGTTTCTTTTGATCTTATTTTAAAGTATTATTTCCTATATTTTCTTTTTCACCAATATACAATTTTAAAAAAACGGTGATACTTTTCGAAAAATCGAAAAATTAGGAGAATAATATTCAAAAATGTGTTCGAAAAATACGATAGTTTGCTATAGCCTTTTCTAAAAAAATTTTAACGAGATTTTCGAAAAACTCGTATTTTCAGATTCCGAGCCTACAAAATTTGTTTAGTATTTTCAATTTTAAGCCCTAAAATGGCATTTCCATTTTTGGAAAATAAAGTTCCTCTTAGGAGAAATTCCATAAAAAATTTTTGCGAATTTTTTTTTAATATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTGTGTAGTTTTGAATCTGTTA</pcr_primer_p1>
		<pcr_primer_p2>CTCTCAACCTTTCAGCAATATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGTGTGTAGTTTTGAATCTGTTAGCCAATTCAGAATCTTACAGGTTTTCGTCAGCTGGTCAGCTGGTAGAAAAAAAAGCCGAGACATAGATTCGGTATATGTACACTGTTGTGCTAGTCTTGAGACTTTACAGATGTTTCGAAAAAGGTCTATTTTTGCTGAAAAATTCAATTTTCTAGTTAAATTTTAATATTGTAACTGTTTTCCATGATGTGAATTTAAAAAAAGATATTGCTGAAAGGTTGAGAG</canonical_amplicon>
		<polymorphic_amplicon>CGTGTGTAGTTTTGAATCTGTTAGCCAATTCAGAATCTTACAGGTTTTCGTCAGCTGGTCAGCTGGTAGAAAAAAAAGCCGAGACATAGATTCGGTATATGTACACTGTTGTGCTAGTCTTGAGACTTYACAGATGTTTCGAAAAAGGTCTATTTTTGCTGAAAAATTCAATTTTCTAGTTAAATTTTAATATTGTAACTGTTTTCCATGATGTGAATTTAAAAAAAGATATTGCTGAAAGGTTGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11577</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>457580</contig_pos>
        <strand>+</strand>
        <context>TTTCGTCAGC[G/T]GGTCAGCTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTAGTTTTGAATCTGTTAGCCAATTCAGAATCTTACAGGTTTTCGTCAGC</left_flank>
        <right_flank>GGTCAGCTGGTAGAAAAAAAAGCCGAGACATAGATTCGGTATATGTACAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTTCTAATGTTAAGCCTACTAAATGTTCCGAAAGAAAAGAAGACCCTGGGCGCCAGTGGGTCGAGAATAATCACCTGTTCGTCTTTCCTCAGCACCCTTTAATTTGCCATGTGTGTTTCTCAAGTACCTTTTCGTTTCAAACAAACGGTATTGTTTGGTATAATGGCTCATTTTCATGTCGGTCTCATCATCATCGCCACCCATTTTCGGAGAATGGGTCACCCAAAAAGCAGCACGGCGAACCTCTCAATCAAACGCTTGTCGTGTCACTCCAATAATAGCATTCGGTGTGGAAGAAGAAGAAGGAGCAGCCGTTTCTTCTTCTTCTTCTTCATCATCATCTTTTCATGTCGTTGTCTCAACACGACATTTATTTCATATTTGAGACAGGCACCTCATAAAACTGCTCATCATGTTTTGAGGAACCCCTCGATTTGTGTTCGTGTGTAGTTTTGAATCTGTTAGCCAATTCAGAATCTTACAGGTTTTCGTCAGCTGGTCAGCTGGTAGAAAAAAAAGCCGAGACATAGATTCGGTATATGTACACTGTTGTGCTAGTCTTGAGACTTTACAGATGTTTCGAAAAAGGTCTATTTTTGCTGAAAAATTCAATTTTCTAGTTAAATTTTAATATTGTAACTGTTTTCCATGATGTGAATTTAAAAAAAGATATTGCTGAAAGGTTGAGAGCGGATATTTTGTCAAATTTGTTTTAAAGGTGCAAGAGCGAACTACCGTTTCTTTTGATCTTATTTTAAAGTATTATTTCCTATATTTTCTTTTTCACCAATATACAATTTTAAAAAAACGGTGATACTTTTCGAAAAATCGAAAAATTAGGAGAATAATATTCAAAAATGTGTTCGAAAAATACGATAGTTTGCTATAGCCTTTTCTAAAAAAATTTTAACGAGATTTTCGAAAAACTCGTATTTTCAGATTCCGAGCCTACAAAATTTGTTTAGTATTTTCAATTTTAAGCCCTAAAATGGCATTT</canonical>
            <polymorphic>GATTTTCTAATGTTAAGCCTACTAAATGTTCCGAAAGAAAAGAAGACCCTGGGCGCCAGTGGGTCGAGAATAATCACCTGTTCGTCTTTCCTCAGCACCCTTTAATTTGCCATGTGTGTTTCTCAAGTACCTTTTCGTTTCAAACAAACGGTATTGTTTGGTATAATGGCTCATTTTCATGTCGGTCTCATCATCATCGCCACCCATTTTCGGAGAATGGGTCACCCAAAAAGCAGCACGGCGAACCTCTCAATCAAACGCTTGTCGTGTCACTCCAATAATAGCATTCGGTGTGGAAGAAGAAGAAGGAGCAGCCGTTTCTTCTTCTTCTTCTTCATCATCATCTTTTCATGTCGTTGTCTCAACACGACATTTATTTCATATTTGAGACAGGCACCTCATAAAACTGCTCATCATGTTTTGAGGAACCCCTCGATTTGTGTTCGTGTGTAGTTTTGAATCTGTTAGCCAATTCAGAATCTTACAGGTTTTCGTCAGCKGGTCAGCTGGTAGAAAAAAAAGCCGAGACATAGATTCGGTATATGTACACTGTTGTGCTAGTCTTGAGACTTTACAGATGTTTCGAAAAAGGTCTATTTTTGCTGAAAAATTCAATTTTCTAGTTAAATTTTAATATTGTAACTGTTTTCCATGATGTGAATTTAAAAAAAGATATTGCTGAAAGGTTGAGAGCGGATATTTTGTCAAATTTGTTTTAAAGGTGCAAGAGCGAACTACCGTTTCTTTTGATCTTATTTTAAAGTATTATTTCCTATATTTTCTTTTTCACCAATATACAATTTTAAAAAAACGGTGATACTTTTCGAAAAATCGAAAAATTAGGAGAATAATATTCAAAAATGTGTTCGAAAAATACGATAGTTTGCTATAGCCTTTTCTAAAAAAATTTTAACGAGATTTTCGAAAAACTCGTATTTTCAGATTCCGAGCCTACAAAATTTGTTTAGTATTTTCAATTTTAAGCCCTAAAATGGCATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>498 494 8</canonical_bands>
                <polymorphic_bands>506 494</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>370 154 152 145 58 34 30 17 16 16 8</canonical_bands>
                <polymorphic_bands>370 154 152 145 58 38 34 17 16 16</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>498 494 8</canonical_bands>
                <polymorphic_bands>506 494</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>498 494 8</canonical_bands>
                <polymorphic_bands>506 494</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTCTTCTTCTTCATCATCATC</pcr_primer_p1>
		<pcr_primer_p2>AAGTCTCAAGACTAGCACAACAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTCTTCTTCTTCATCATCATCTTTTCATGTCGTTGTCTCAACACGACATTTATTTCATATTTGAGACAGGCACCTCATAAAACTGCTCATCATGTTTTGAGGAACCCCTCGATTTGTGTTCGTGTGTAGTTTTGAATCTGTTAGCCAATTCAGAATCTTACAGGTTTTCGTCAGCTGGTCAGCTGGTAGAAAAAAAAGCCGAGACATAGATTCGGTATATGTACACTGTTGTGCTAGTCTTGAGACTT</canonical_amplicon>
		<polymorphic_amplicon>TCTTCTTCTTCTTCATCATCATCTTTTCATGTCGTTGTCTCAACACGACATTTATTTCATATTTGAGACAGGCACCTCATAAAACTGCTCATCATGTTTTGAGGAACCCCTCGATTTGTGTTCGTGTGTAGTTTTGAATCTGTTAGCCAATTCAGAATCTTACAGGTTTTCGTCAGCKGGTCAGCTGGTAGAAAAAAAAGCCGAGACATAGATTCGGTATATGTACACTGTTGTGCTAGTCTTGAGACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11578</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>457563</contig_pos>
        <strand>+</strand>
        <context>TTCAGAATCT[C/T]ACAGGTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGATTTGTGTTCGTGTGTAGTTTTGAATCTGTTAGCCAATTCAGAATCT</left_flank>
        <right_flank>ACAGGTTTTCGTCAGCTGGTCAGCTGGTAGAAAAAAAAGCCGAGACATAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTTTTCATCTTTTCTGATTTTCTAATGTTAAGCCTACTAAATGTTCCGAAAGAAAAGAAGACCCTGGGCGCCAGTGGGTCGAGAATAATCACCTGTTCGTCTTTCCTCAGCACCCTTTAATTTGCCATGTGTGTTTCTCAAGTACCTTTTCGTTTCAAACAAACGGTATTGTTTGGTATAATGGCTCATTTTCATGTCGGTCTCATCATCATCGCCACCCATTTTCGGAGAATGGGTCACCCAAAAAGCAGCACGGCGAACCTCTCAATCAAACGCTTGTCGTGTCACTCCAATAATAGCATTCGGTGTGGAAGAAGAAGAAGGAGCAGCCGTTTCTTCTTCTTCTTCTTCATCATCATCTTTTCATGTCGTTGTCTCAACACGACATTTATTTCATATTTGAGACAGGCACCTCATAAAACTGCTCATCATGTTTTGAGGAACCCCTCGATTTGTGTTCGTGTGTAGTTTTGAATCTGTTAGCCAATTCAGAATCTTACAGGTTTTCGTCAGCTGGTCAGCTGGTAGAAAAAAAAGCCGAGACATAGATTCGGTATATGTACACTGTTGTGCTAGTCTTGAGACTTTACAGATGTTTCGAAAAAGGTCTATTTTTGCTGAAAAATTCAATTTTCTAGTTAAATTTTAATATTGTAACTGTTTTCCATGATGTGAATTTAAAAAAAGATATTGCTGAAAGGTTGAGAGCGGATATTTTGTCAAATTTGTTTTAAAGGTGCAAGAGCGAACTACCGTTTCTTTTGATCTTATTTTAAAGTATTATTTCCTATATTTTCTTTTTCACCAATATACAATTTTAAAAAAACGGTGATACTTTTCGAAAAATCGAAAAATTAGGAGAATAATATTCAAAAATGTGTTCGAAAAATACGATAGTTTGCTATAGCCTTTTCTAAAAAAATTTTAACGAGATTTTCGAAAAACTCGTATTTTCAGATTCCGAGCCTACAAAATTTGTTTAGTATTTTCAATTTTAA</canonical>
            <polymorphic>GACTTTTCATCTTTTCTGATTTTCTAATGTTAAGCCTACTAAATGTTCCGAAAGAAAAGAAGACCCTGGGCGCCAGTGGGTCGAGAATAATCACCTGTTCGTCTTTCCTCAGCACCCTTTAATTTGCCATGTGTGTTTCTCAAGTACCTTTTCGTTTCAAACAAACGGTATTGTTTGGTATAATGGCTCATTTTCATGTCGGTCTCATCATCATCGCCACCCATTTTCGGAGAATGGGTCACCCAAAAAGCAGCACGGCGAACCTCTCAATCAAACGCTTGTCGTGTCACTCCAATAATAGCATTCGGTGTGGAAGAAGAAGAAGGAGCAGCCGTTTCTTCTTCTTCTTCTTCATCATCATCTTTTCATGTCGTTGTCTCAACACGACATTTATTTCATATTTGAGACAGGCACCTCATAAAACTGCTCATCATGTTTTGAGGAACCCCTCGATTTGTGTTCGTGTGTAGTTTTGAATCTGTTAGCCAATTCAGAATCTYACAGGTTTTCGTCAGCTGGTCAGCTGGTAGAAAAAAAAGCCGAGACATAGATTCGGTATATGTACACTGTTGTGCTAGTCTTGAGACTTTACAGATGTTTCGAAAAAGGTCTATTTTTGCTGAAAAATTCAATTTTCTAGTTAAATTTTAATATTGTAACTGTTTTCCATGATGTGAATTTAAAAAAAGATATTGCTGAAAGGTTGAGAGCGGATATTTTGTCAAATTTGTTTTAAAGGTGCAAGAGCGAACTACCGTTTCTTTTGATCTTATTTTAAAGTATTATTTCCTATATTTTCTTTTTCACCAATATACAATTTTAAAAAAACGGTGATACTTTTCGAAAAATCGAAAAATTAGGAGAATAATATTCAAAAATGTGTTCGAAAAATACGATAGTTTGCTATAGCCTTTTCTAAAAAAATTTTAACGAGATTTTCGAAAAACTCGTATTTTCAGATTCCGAGCCTACAAAATTTGTTTAGTATTTTCAATTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTCTTCTTCTTCATCATCATC</pcr_primer_p1>
		<pcr_primer_p2>AAGTCTCAAGACTAGCACAACAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTCTTCTTCTTCATCATCATCTTTTCATGTCGTTGTCTCAACACGACATTTATTTCATATTTGAGACAGGCACCTCATAAAACTGCTCATCATGTTTTGAGGAACCCCTCGATTTGTGTTCGTGTGTAGTTTTGAATCTGTTAGCCAATTCAGAATCTTACAGGTTTTCGTCAGCTGGTCAGCTGGTAGAAAAAAAAGCCGAGACATAGATTCGGTATATGTACACTGTTGTGCTAGTCTTGAGACTT</canonical_amplicon>
		<polymorphic_amplicon>TCTTCTTCTTCTTCATCATCATCTTTTCATGTCGTTGTCTCAACACGACATTTATTTCATATTTGAGACAGGCACCTCATAAAACTGCTCATCATGTTTTGAGGAACCCCTCGATTTGTGTTCGTGTGTAGTTTTGAATCTGTTAGCCAATTCAGAATCTYACAGGTTTTCGTCAGCTGGTCAGCTGGTAGAAAAAAAAGCCGAGACATAGATTCGGTATATGTACACTGTTGTGCTAGTCTTGAGACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11579</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>485424</contig_pos>
        <strand>+</strand>
        <context>AKTTTTCTGA[C/T]TTTTATAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGA</left_flank>
        <right_flank>TTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAAGGATACTGTCAATTGGTGGTTGAATGGAAAGATCTTCACCAGCTGTTGAATCTTCTCGGATGTCGGGGAAGTCACCGCGAAGATTTGGTGGTTTCGTACTTCCGAGAGGATCGGCGGAGTCAATTGAGGAGAGGTAATCTTCGGTTCTCATGTTGAAAGGGTCATACTAGAAAAAAATGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCCTATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCGAATCTACCAAAAATCTGTTTTATTCAGAAAAATTATTGTTCCAATTCTTTTATCTTATCCACCTAGCCTCCATAAACTGAAATGGATATACTGTTGACAAAAATCCGGGTTCCCCGCAGATAATTGGGATCCGCTGTCAACATATACATCACATATCGTTCAAATTTGATTCCTTGTTCTTATGATCACATTTTATCACCAAAACAAAAACGTGTAGCTAATTA</canonical>
            <polymorphic>CTGAAGGATACTGTCAATTGGTGGTTGAATGGAAAGATCTTCACCAGCTGTTGAATCTTCTCGGATGTCGGGGAAGTCACCGCGAAGATTTGGTGGTTTCGTACTTCCGAGAGGATCGGCGGAGTCAATTGAGGAGAGGTAATCTTCGGTTCTCATGTTGAAAGGGTCATACTAGAAAAAAATGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCCTATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGAYTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCGAATCTACCAAAAATCTGTTTTATTCAGAAAAATTATTGTTCCAATTCTTTTATCTTATCCACCTAGCCTCCATAAACTGAAATGGATATACTGTTGACAAAAATCCGGGTTCCCCGCAGATAATTGGGATCCGCTGTCAACATATACATCACATATCGTTCAAATTTGATTCCTTGTTCTTATGATCACATTTTATCACCAAAACAAAAACGTGTAGCTAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTAGGTTCTCAAATTTTCTCAG</pcr_primer_p1>
		<pcr_primer_p2>CGATCAAACCAAGTTCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>344</pcr_amplicon_size>
		<canonical_amplicon>GGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCG</canonical_amplicon>
		<polymorphic_amplicon>GGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGAYTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11580</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>485415</contig_pos>
        <strand>+</strand>
        <context>GGATTCAAGA[G/T]TTTTCTGAYT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGA</left_flank>
        <right_flank>TTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGGGGTACTGAAGGATACTGTCAATTGGTGGTTGAATGGAAAGATCTTCACCAGCTGTTGAATCTTCTCGGATGTCGGGGAAGTCACCGCGAAGATTTGGTGGTTTCGTACTTCCGAGAGGATCGGCGGAGTCAATTGAGGAGAGGTAATCTTCGGTTCTCATGTTGAAAGGGTCATACTAGAAAAAAATGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCCTATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCGAATCTACCAAAAATCTGTTTTATTCAGAAAAATTATTGTTCCAATTCTTTTATCTTATCCACCTAGCCTCCATAAACTGAAATGGATATACTGTTGACAAAAATCCGGGTTCCCCGCAGATAATTGGGATCCGCTGTCAACATATACATCACATATCGTTCAAATTTGATTCCTTGTTCTTATGATCACATTTTATCACCAAAACAAAAACGTGT</canonical>
            <polymorphic>GTTGGGGTACTGAAGGATACTGTCAATTGGTGGTTGAATGGAAAGATCTTCACCAGCTGTTGAATCTTCTCGGATGTCGGGGAAGTCACCGCGAAGATTTGGTGGTTTCGTACTTCCGAGAGGATCGGCGGAGTCAATTGAGGAGAGGTAATCTTCGGTTCTCATGTTGAAAGGGTCATACTAGAAAAAAATGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCCTATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAKTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCGAATCTACCAAAAATCTGTTTTATTCAGAAAAATTATTGTTCCAATTCTTTTATCTTATCCACCTAGCCTCCATAAACTGAAATGGATATACTGTTGACAAAAATCCGGGTTCCCCGCAGATAATTGGGATCCGCTGTCAACATATACATCACATATCGTTCAAATTTGATTCCTTGTTCTTATGATCACATTTTATCACCAAAACAAAAACGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTAGGTTCTCAAATTTTCTCAG</pcr_primer_p1>
		<pcr_primer_p2>CGATCAAACCAAGTTCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>344</pcr_amplicon_size>
		<canonical_amplicon>GGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCG</canonical_amplicon>
		<polymorphic_amplicon>GGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAKTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11581</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>515319</contig_pos>
        <strand></strand>
        <context>TCCAAAATTC[T/C]CATCCTAGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGCCACCGATCTTACTTCTTTGTTTCTCTCTCTCTCTCTCTCCAAAATTC</left_flank>
        <right_flank>CATCCTAGTATCTTCCTCCAAAAGAGAGCCACGAGGTAAAAAAGAAAAAG</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTACCTTGTACTCGACCAGGTCATCCTCCTCAGCCACAGTCAACTCGAACATGGTGTTGTGCTGGTGGAACTCCTCGTCCATCTTCTCGACAACATCGCGAGCGAAAATCTCTCTGGCCTGAAAACGTTTCTTTATGCAGTTATAGATTACTGTAGCCAAACTAACCTTGAGCCTGATGGAGTAGTAGACGTAGGTCATCTGTCTTTTCTTCTGCTGACAAATCAGCTTGGACAGCTCCAGCTCGCGGGCGACAAAGTTGCGGATGGATGGTTCGTGGGACATTTTCTTAAAAAATTTATCGATTTTTTATTATTTTCGGAATGGGAACGAGTTTTTGATTCCGTTGAAATAAGTAACTGAAATAGGGAAATAGGTAAGAAATACTTTTTTTGGAAATCAAAGTTTTCCAAATAACCTATATTCGCTTTTATGGTCATATTCTCATGAAGCCACCGATCTTACTTCTTTGTTTCTCTCTCTCTCTCTCTCCAAAATTCTCATCCTAGTATCTTCCTCCAAAAGAGAGCCACGAGGTAAAAAAGAAAAAGTGCAAAAAAAGAAGAAAAGAAAAAGAAAAGAAAGAAGAAAAACGAACGGAGGGGTCTTTATTGTGCGTGTGTTCAGAAGCAAGGACAAAAAATGGGGAGAGGAGAGAGGAGGGAAAGAAAAAAATTACCATGCATACTGGAAAAAATATGAATCAAAGAAAAAAAAACGTTCTGGGTCGTCAAAACAGACGTCATAATGAGAATAACACTTGGGGTCACAGTTTACTGTAGGACATGCAAGGACAAGGAATGGAAGCAGTATATGACTCATGCTGTACATGATTACAGCAGGACATGGGGTACTGTACAATCGGACTCGAGGGTTAATATTGAATTGAATTCGAGGGTTGCTGTGGAACTTCGGCAAAGAAGAAAAAAAAAGAAAAGTAGAGAAAAGTCGACAGAGGTAGATTCTTCTAGAAACTTTCAGATGGTTTCCAAAAAAAAACT</canonical>
            <polymorphic>ATTACCTTGTACTCGACCAGGTCATCCTCCTCAGCCACAGTCAACTCGAACATGGTGTTGTGCTGGTGGAACTCCTCGTCCATCTTCTCGACAACATCGCGAGCGAAAATCTCTCTGGCCTGAAAACGTTTCTTTATGCAGTTATAGATTACTGTAGCCAAACTAACCTTGAGCCTGATGGAGTAGTAGACGTAGGTCATCTGTCTTTTCTTCTGCTGACAAATCAGCTTGGACAGCTCCAGCTCGCGGGCGACAAAGTTGCGGATGGATGGTTCGTGGGACATTTTCTTAAAAAATTTATCGATTTTTTATTATTTTCGGAATGGGAACGAGTTTTTGATTCCGTTGAAATAAGTAACTGAAATAGGGAAATAGGTAAGAAATACTTTTTTTGGAAATCAAAGTTTTCCAAATAACCTATATTCGCTTTTATGGTCATATTCTCATGAAGCCACCGATCTTACTTCTTTGTTTCTCTCTCTCTCTCTCTCCAAAATTCYCATCCTAGTATCTTCCTCCAAAAGAGAGCCACGAGGTAAAAAAGAAAAAGTGCAAAAAAAGAAGAAAAGAAAAAGAAAAGAAAGAAGAAAAACGAACGGAGGGGTCTTTATTGTGCGTGTGTTCAGAAGCAAGGACAAAAAATGGGGAGAGGAGAGAGGAGGGAAAGAAAAAAATTACCATGCATACTGGAAAAAATATGAATCAAAGAAAAAAAAACGTTCTGGGTCGTCAAAACAGACGTCATAATGAGAATAACACTTGGGGTCACAGTTTACTGTAGGACATGCAAGGACAAGGAATGGAAGCAGTATATGACTCATGCTGTACATGATTACAGCAGGACATGGGGTACTGTACAATCGGACTCGAGGGTTAATATTGAATTGAATTCGAGGGTTGCTGTGGAACTTCGGCAAAGAAGAAAAAAAAAGAAAAGTAGAGAAAAGTCGACAGAGGTAGATTCTTCTAGAAACTTTCAGATGGTTTCCAAAAAAAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTCGCTTTTATGGTCATATTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTTTCCCTCCTCTCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATTCGCTTTTATGGTCATATTCTCATGAAGCCACCGATCTTACTTCTTTGTTTCTCTCTCTCTCTCTCTCCAAAATTCTCATCCTAGTATCTTCCTCCAAAAGAGAGCCACGAGGTAAAAAAGAAAAAGTGCAAAAAAAGAAGAAAAGAAAAAGAAAAGAAAGAAGAAAAACGAACGGAGGGGTCTTTATTGTGCGTGTGTTCAGAAGCAAGGACAAAAAATGGGGAGAGGAGAGAGGAGGGAAAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TATTCGCTTTTATGGTCATATTCTCATGAAGCCACCGATCTTACTTCTTTGTTTCTCTCTCTCTCTCTCTCCAAAATTCYCATCCTAGTATCTTCCTCCAAAAGAGAGCCACGAGGTAAAAAAGAAAAAGTGCAAAAAAAGAAGAAAAGAAAAAGAAAAGAAAGAAGAAAAACGAACGGAGGGGTCTTTATTGTGCGTGTGTTCAGAAGCAAGGACAAAAAATGGGGAGAGGAGAGAGGAGGGAAAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11583</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>517123</contig_pos>
        <strand>+</strand>
        <context>AAAAGAAAAG[A/G]ATTCACATTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAG</left_flank>
        <right_flank>ATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTA</right_flank>
        <qual_score>134</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATTATTACAAAAAAAAAATATTTTCAGAATTTCAGTCCTAAACTGGTCTTTTGGAAACTTTGAAATTCGGATTCAGTTTCAAAAATCCCTGCCAAATTTGAAAGCTCCAACCCTTTTAAAGTTGTAACCAGATGAGCTACGGTAGCGTTGGTGATGTCATATGAAGCCGTCAGGACAGCCACGGGTTGTGTAAACACCGATCACCGTACACCGTCACGTCAAAATGCATACTCTCGCTCAAAAACCGTGACAAACTTTCTTGCTTGAAAATTGAATACCGTATTTTCTCTAACAGAAGCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGGATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAAATGTTAACTGCACCCATGCTTCATCTTCAAAAGTGATACATGAAATTTTTTGAAAAATTTTTTAGTCTTGGAATGTTTTCCTTATGGGATTCTAAATTGTATTTTGTTGTCTTTTTTCACTTTCATT</canonical>
            <polymorphic>AAAATTATTACAAAAAAAAAATATTTTCAGAATTTCAGTCCTAAACTGGTCTTTTGGAAACTTTGAAATTCGGATTCAGTTTCAAAAATCCCTGCCAAATTTGAAAGCTCCAACCCTTTTAAAGTTGTAACCAGATGAGCTACGGTAGCGTTGGTGATGTCATATGAAGCCGTCAGGACAGCCACGGGTTGTGTAAACACCGATCACCGTACACCGTCACGTCAAAATGCATACTCTCGCTCAAAAACCGTGACAAACTTTCTTGCTTGAAAATTGAATACCGTATTTTCTCTAACAGAAGCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGRATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAAATGTTAACTGCACCCATGCTTCATCTTCAAAAGTGATACATGAAATTTTTTGAAAAATTTTTTAGTCTTGGAATGTTTTCCTTATGGGATTCTAAATTGTATTTTGTTGTCTTTTTTCACTTTCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>427 165 160 119 73 39 17</canonical_bands>
                <polymorphic_bands>587 165 119 73 39 17</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>427 301 160 73 39</canonical_bands>
                <polymorphic_bands>587 301 73 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCTTTTGTTAGAGAAATTACG</pcr_primer_p1>
		<pcr_primer_p2>ATTGAATTGCCTCTCTTTCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>198</pcr_amplicon_size>
		<canonical_amplicon>GGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGGATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAAT</canonical_amplicon>
		<polymorphic_amplicon>GGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGRATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11584</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>44516</contig_pos>
        <strand>+</strand>
        <context>AGCATGGTTC[A/G]CGCCAGCTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGTGGGACAGGAGATTTGGAAGAACGTTCCAGCTTTGCCAGCATGGTTC</left_flank>
        <right_flank>CGCCAGCTTGTCAGTCGGTAGCAGGGCCGCACTTCCAATACTCGCCACAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGGAATCAGAATTTCAGATTTTCAGTAATTTTGAATTTCTGGTGCCTGTTAGAGCTTTCCAAAATTGTCAGTTAAAAACCCTCGTGATTATAGCAAGCCTCATTTGCCTATTGTTTTGTTGTCTCCAACCTAGATTAATTGTCATCAAAGTAATGGTATTGGATACTAGTATATTAGATGGACTACGGCAATTCAACATGAGTATCATGCCTTGGATTTTTAACACAAACAGCAAACGTTCAGACTTTTCTAAACGATCCGGAAATCTAAATTGTTCACTTCCTTTTCACTCACATGATTCATCTTTTCGTGATTTGAGATCTACGACGTAACGATGTACTGATTTGATTCAACTCACCTGAATTGAATTGGAAATCATCGGACTGACGAGAACTGTTTTTCTGATGATCTATTCATTTTTTAAGATACGTAGAAATCTGTTAAAGGAGGTGGGACAGGAGATTTGGAAGAACGTTCCAGCTTTGCCAGCATGGTTCACGCCAGCTTGTCAGTCGGTAGCAGGGCCGCACTTCCAATACTCGCCACACAAGATCAAATTTTCGTCGAGAGGCTTATATGAACAAAATTTGAAGTCGTTTTTTTTCGTATCCCTCCACCTTAAAGGAGTATGGAAAACGCATATTGCCCAAAATAACGACAAAGTACGCTAGTTCTCTGGTGTCATAGAAATCAAAAGCATTTAAAATACAATAACAACCGATGCCGTACAAAACCATGAAATCTAAGTCTTTCTCTATTTTCGTTTCTGATCCTCTTTTCTATTCAGAACCACTTCTTTTTCATTATTGTTATAACTGTTTTGATCTCTAATCATCTAGCTCTTCTTTATTTCATTTTCCTCTCTTTTTATTCACATTGAAAAGCGCGAAAAGGTGATTGGATGACCGGATCCAGTCCTTCTGTCCAATTCTTCGCGTTCCGTTCAATCCCATTTCCACCTCCGATCCCTCTACCCTCTCCACCGTCACCTCCGAAAA</canonical>
            <polymorphic>TTTGGAATCAGAATTTCAGATTTTCAGTAATTTTGAATTTCTGGTGCCTGTTAGAGCTTTCCAAAATTGTCAGTTAAAAACCCTCGTGATTATAGCAAGCCTCATTTGCCTATTGTTTTGTTGTCTCCAACCTAGATTAATTGTCATCAAAGTAATGGTATTGGATACTAGTATATTAGATGGACTACGGCAATTCAACATGAGTATCATGCCTTGGATTTTTAACACAAACAGCAAACGTTCAGACTTTTCTAAACGATCCGGAAATCTAAATTGTTCACTTCCTTTTCACTCACATGATTCATCTTTTCGTGATTTGAGATCTACGACGTAACGATGTACTGATTTGATTCAACTCACCTGAATTGAATTGGAAATCATCGGACTGACGAGAACTGTTTTTCTGATGATCTATTCATTTTTTAAGATACGTAGAAATCTGTTAAAGGAGGTGGGACAGGAGATTTGGAAGAACGTTCCAGCTTTGCCAGCATGGTTCRCGCCAGCTTGTCAGTCGGTAGCAGGGCCGCACTTCCAATACTCGCCACACAAGATCAAATTTTCGTCGAGAGGCTTATATGAACAAAATTTGAAGTCGTTTTTTTTCGTATCCCTCCACCTTAAAGGAGTATGGAAAACGCATATTGCCCAAAATAACGACAAAGTACGCTAGTTCTCTGGTGTCATAGAAATCAAAAGCATTTAAAATACAATAACAACCGATGCCGTACAAAACCATGAAATCTAAGTCTTTCTCTATTTTCGTTTCTGATCCTCTTTTCTATTCAGAACCACTTCTTTTTCATTATTGTTATAACTGTTTTGATCTCTAATCATCTAGCTCTTCTTTATTTCATTTTCCTCTCTTTTTATTCACATTGAAAAGCGCGAAAAGGTGATTGGATGACCGGATCCAGTCCTTCTGTCCAATTCTTCGCGTTCCGTTCAATCCCATTTCCACCTCCGATCCCTCTACCCTCTCCACCGTCACCTCCGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>139 111 95 82 69 65 62 53 46 46 45 42 31 24 22 19 16 11 10 6 4 2</canonical_bands>
                <polymorphic_bands>139 111 95 82 77 69 65 62 53 46 45 42 24 22 19 16 11 10 6 4 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 278 220</canonical_bands>
                <polymorphic_bands>722 278</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTAGAAATCTGTTAAAGGAGGT</pcr_primer_p1>
		<pcr_primer_p2>AGAACTAGCGTACTTTGTCGTTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CGTAGAAATCTGTTAAAGGAGGTGGGACAGGAGATTTGGAAGAACGTTCCAGCTTTGCCAGCATGGTTCACGCCAGCTTGTCAGTCGGTAGCAGGGCCGCACTTCCAATACTCGCCACACAAGATCAAATTTTCGTCGAGAGGCTTATATGAACAAAATTTGAAGTCGTTTTTTTTCGTATCCCTCCACCTTAAAGGAGTATGGAAAACGCATATTGCCCAAAATAACGACAAAGTACGCTAGTTCT</canonical_amplicon>
		<polymorphic_amplicon>CGTAGAAATCTGTTAAAGGAGGTGGGACAGGAGATTTGGAAGAACGTTCCAGCTTTGCCAGCATGGTTCRCGCCAGCTTGTCAGTCGGTAGCAGGGCCGCACTTCCAATACTCGCCACACAAGATCAAATTTTCGTCGAGAGGCTTATATGAACAAAATTTGAAGTCGTTTTTTTTCGTATCCCTCCACCTTAAAGGAGTATGGAAAACGCATATTGCCCAAAATAACGACAAAGTACGCTAGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11585</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>44768</contig_pos>
        <strand>+</strand>
        <context>AATCTAAGTC[C/T]TTCTCTATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTAAAATACAATAACAACCGATGCCGTACAAAACCATGAAATCTAAGTC</left_flank>
        <right_flank>TTCTCTATTTTCGTTTCTGATCCTCTTTTCTATTCAGAACCACTTCTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAACGATCCGGAAATCTAAATTGTTCACTTCCTTTTCACTCACATGATTCATCTTTTCGTGATTTGAGATCTACGACGTAACGATGTACTGATTTGATTCAACTCACCTGAATTGAATTGGAAATCATCGGACTGACGAGAACTGTTTTTCTGATGATCTATTCATTTTTTAAGATACGTAGAAATCTGTTAAAGGAGGTGGGACAGGAGATTTGGAAGAACGTTCCAGCTTTGCCAGCATGGTTCACGCCAGCTTGTCAGTCGGTAGCAGGGCCGCACTTCCAATACTCGCCACACAAGATCAAATTTTCGTCGAGAGGCTTATATGAACAAAATTTGAAGTCGTTTTTTTTCGTATCCCTCCACCTTAAAGGAGTATGGAAAACGCATATTGCCCAAAATAACGACAAAGTACGCTAGTTCTCTGGTGTCATAGAAATCAAAAGCATTTAAAATACAATAACAACCGATGCCGTACAAAACCATGAAATCTAAGTCTTTCTCTATTTTCGTTTCTGATCCTCTTTTCTATTCAGAACCACTTCTTTTTCATTATTGTTATAACTGTTTTGATCTCTAATCATCTAGCTCTTCTTTATTTCATTTTCCTCTCTTTTTATTCACATTGAAAAGCGCGAAAAGGTGATTGGATGACCGGATCCAGTCCTTCTGTCCAATTCTTCGCGTTCCGTTCAATCCCATTTCCACCTCCGATCCCTCTACCCTCTCCACCGTCACCTCCGAAAACCAGTTGTTCCAAAAAGCCCCGAGATGAAAAAGAATCAGCCGGTTTCCATGGCGGAGTGTACCTCTTCTATATGTTTCTATTCTGAAGTATGCATTGAGAAGAAAAAACAGAAGACGTGGGAAGACAGGGCCAGGATAGAGCGAACAATTTCTTCTCTTTTTTCCTCGCCCATCTGTATACTCGGACGTCAGCAGGTTTTGCCGATTGTGGTAGGCGTTTTGTCAATGACGGACATATTGACAAAAGTACCT</canonical>
            <polymorphic>TAAACGATCCGGAAATCTAAATTGTTCACTTCCTTTTCACTCACATGATTCATCTTTTCGTGATTTGAGATCTACGACGTAACGATGTACTGATTTGATTCAACTCACCTGAATTGAATTGGAAATCATCGGACTGACGAGAACTGTTTTTCTGATGATCTATTCATTTTTTAAGATACGTAGAAATCTGTTAAAGGAGGTGGGACAGGAGATTTGGAAGAACGTTCCAGCTTTGCCAGCATGGTTCACGCCAGCTTGTCAGTCGGTAGCAGGGCCGCACTTCCAATACTCGCCACACAAGATCAAATTTTCGTCGAGAGGCTTATATGAACAAAATTTGAAGTCGTTTTTTTTCGTATCCCTCCACCTTAAAGGAGTATGGAAAACGCATATTGCCCAAAATAACGACAAAGTACGCTAGTTCTCTGGTGTCATAGAAATCAAAAGCATTTAAAATACAATAACAACCGATGCCGTACAAAACCATGAAATCTAAGTCYTTCTCTATTTTCGTTTCTGATCCTCTTTTCTATTCAGAACCACTTCTTTTTCATTATTGTTATAACTGTTTTGATCTCTAATCATCTAGCTCTTCTTTATTTCATTTTCCTCTCTTTTTATTCACATTGAAAAGCGCGAAAAGGTGATTGGATGACCGGATCCAGTCCTTCTGTCCAATTCTTCGCGTTCCGTTCAATCCCATTTCCACCTCCGATCCCTCTACCCTCTCCACCGTCACCTCCGAAAACCAGTTGTTCCAAAAAGCCCCGAGATGAAAAAGAATCAGCCGGTTTCCATGGCGGAGTGTACCTCTTCTATATGTTTCTATTCTGAAGTATGCATTGAGAAGAAAAAACAGAAGACGTGGGAAGACAGGGCCAGGATAGAGCGAACAATTTCTTCTCTTTTTTCCTCGCCCATCTGTATACTCGGACGTCAGCAGGTTTTGCCGATTGTGGTAGGCGTTTTGTCAATGACGGACATATTGACAAAAGTACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCTTAAAGGAGTATGGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>AGGAAAATGAAATAAAGAAGAGC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CACCTTAAAGGAGTATGGAAAACGCATATTGCCCAAAATAACGACAAAGTACGCTAGTTCTCTGGTGTCATAGAAATCAAAAGCATTTAAAATACAATAACAACCGATGCCGTACAAAACCATGAAATCTAAGTCTTTCTCTATTTTCGTTTCTGATCCTCTTTTCTATTCAGAACCACTTCTTTTTCATTATTGTTATAACTGTTTTGATCTCTAATCATCTAGCTCTTCTTTATTTCATTTTCCT</canonical_amplicon>
		<polymorphic_amplicon>CACCTTAAAGGAGTATGGAAAACGCATATTGCCCAAAATAACGACAAAGTACGCTAGTTCTCTGGTGTCATAGAAATCAAAAGCATTTAAAATACAATAACAACCGATGCCGTACAAAACCATGAAATCTAAGTCYTTCTCTATTTTCGTTTCTGATCCTCTTTTCTATTCAGAACCACTTCTTTTTCATTATTGTTATAACTGTTTTGATCTCTAATCATCTAGCTCTTCTTTATTTCATTTTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11586</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>44899</contig_pos>
        <strand>+</strand>
        <context>TTCACATTGA[A/G]AAGCGCGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCATCTAGCTCTTCTTTATTTCATTTTCCTCTCTTTTTATTCACATTGA</left_flank>
        <right_flank>AAGCGCGAAAAGGTGATTGGATGACCGGATCCAGTCCTTCTGTCCAATTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTGACGAGAACTGTTTTTCTGATGATCTATTCATTTTTTAAGATACGTAGAAATCTGTTAAAGGAGGTGGGACAGGAGATTTGGAAGAACGTTCCAGCTTTGCCAGCATGGTTCACGCCAGCTTGTCAGTCGGTAGCAGGGCCGCACTTCCAATACTCGCCACACAAGATCAAATTTTCGTCGAGAGGCTTATATGAACAAAATTTGAAGTCGTTTTTTTTCGTATCCCTCCACCTTAAAGGAGTATGGAAAACGCATATTGCCCAAAATAACGACAAAGTACGCTAGTTCTCTGGTGTCATAGAAATCAAAAGCATTTAAAATACAATAACAACCGATGCCGTACAAAACCATGAAATCTAAGTCTTTCTCTATTTTCGTTTCTGATCCTCTTTTCTATTCAGAACCACTTCTTTTTCATTATTGTTATAACTGTTTTGATCTCTAATCATCTAGCTCTTCTTTATTTCATTTTCCTCTCTTTTTATTCACATTGAAAAGCGCGAAAAGGTGATTGGATGACCGGATCCAGTCCTTCTGTCCAATTCTTCGCGTTCCGTTCAATCCCATTTCCACCTCCGATCCCTCTACCCTCTCCACCGTCACCTCCGAAAACCAGTTGTTCCAAAAAGCCCCGAGATGAAAAAGAATCAGCCGGTTTCCATGGCGGAGTGTACCTCTTCTATATGTTTCTATTCTGAAGTATGCATTGAGAAGAAAAAACAGAAGACGTGGGAAGACAGGGCCAGGATAGAGCGAACAATTTCTTCTCTTTTTTCCTCGCCCATCTGTATACTCGGACGTCAGCAGGTTTTGCCGATTGTGGTAGGCGTTTTGTCAATGACGGACATATTGACAAAAGTACCTCCTTTTTGGTTTTTTTTTGAACGACTACTGGTCAGCTGATTTCATTTTTTGTTGATTGTTCTGTTGATTGGGGATAGCAAACCTTTGTTCGGTGGTCTTTAAAATACTGGACCGCAATTAATCATTGATGT</canonical>
            <polymorphic>GACTGACGAGAACTGTTTTTCTGATGATCTATTCATTTTTTAAGATACGTAGAAATCTGTTAAAGGAGGTGGGACAGGAGATTTGGAAGAACGTTCCAGCTTTGCCAGCATGGTTCACGCCAGCTTGTCAGTCGGTAGCAGGGCCGCACTTCCAATACTCGCCACACAAGATCAAATTTTCGTCGAGAGGCTTATATGAACAAAATTTGAAGTCGTTTTTTTTCGTATCCCTCCACCTTAAAGGAGTATGGAAAACGCATATTGCCCAAAATAACGACAAAGTACGCTAGTTCTCTGGTGTCATAGAAATCAAAAGCATTTAAAATACAATAACAACCGATGCCGTACAAAACCATGAAATCTAAGTCTTTCTCTATTTTCGTTTCTGATCCTCTTTTCTATTCAGAACCACTTCTTTTTCATTATTGTTATAACTGTTTTGATCTCTAATCATCTAGCTCTTCTTTATTTCATTTTCCTCTCTTTTTATTCACATTGARAAGCGCGAAAAGGTGATTGGATGACCGGATCCAGTCCTTCTGTCCAATTCTTCGCGTTCCGTTCAATCCCATTTCCACCTCCGATCCCTCTACCCTCTCCACCGTCACCTCCGAAAACCAGTTGTTCCAAAAAGCCCCGAGATGAAAAAGAATCAGCCGGTTTCCATGGCGGAGTGTACCTCTTCTATATGTTTCTATTCTGAAGTATGCATTGAGAAGAAAAAACAGAAGACGTGGGAAGACAGGGCCAGGATAGAGCGAACAATTTCTTCTCTTTTTTCCTCGCCCATCTGTATACTCGGACGTCAGCAGGTTTTGCCGATTGTGGTAGGCGTTTTGTCAATGACGGACATATTGACAAAAGTACCTCCTTTTTGGTTTTTTTTTGAACGACTACTGGTCAGCTGATTTCATTTTTTGTTGATTGTTCTGTTGATTGGGGATAGCAAACCTTTGTTCGGTGGTCTTTAAAATACTGGACCGCAATTAATCATTGATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATCAAAAGCATTTAAAATACAA</pcr_primer_p1>
		<pcr_primer_p2>GAAGAATTGGACAGAAGGACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAATCAAAAGCATTTAAAATACAATAACAACCGATGCCGTACAAAACCATGAAATCTAAGTCTTTCTCTATTTTCGTTTCTGATCCTCTTTTCTATTCAGAACCACTTCTTTTTCATTATTGTTATAACTGTTTTGATCTCTAATCATCTAGCTCTTCTTTATTTCATTTTCCTCTCTTTTTATTCACATTGAAAAGCGCGAAAAGGTGATTGGATGACCGGATCCAGTCCTTCTGTCCAATTCTTC</canonical_amplicon>
		<polymorphic_amplicon>GAAATCAAAAGCATTTAAAATACAATAACAACCGATGCCGTACAAAACCATGAAATCTAAGTCTTTCTCTATTTTCGTTTCTGATCCTCTTTTCTATTCAGAACCACTTCTTTTTCATTATTGTTATAACTGTTTTGATCTCTAATCATCTAGCTCTTCTTTATTTCATTTTCCTCTCTTTTTATTCACATTGARAAGCGCGAAAAGGTGATTGGATGACCGGATCCAGTCCTTCTGTCCAATTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11587</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>47057</contig_pos>
        <strand>+</strand>
        <context>GGAAACATTC[G/T]TATTCGGCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGATGGGTGATAAACTTGATTATGTCAGAGGAAGAGAATGGAAACATTC</left_flank>
        <right_flank>TATTCGGCAGATTTGTGGCAACAAACCTTTTTCCAGTTTCCTGTTTTGAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTCCTTTTTCCACCTCTATTCTTCTCTTTTTACTTCACTTTGCCATTAAATTCGCCCTCCTTTTTTTTGTGAGTTATTGGATTTCTTTTGGACTTTTGAATAAATTGGGTGGCTTGTTACAATTGGAATTATCAAGCCTAACGGAAATAATTTGTTTAGTCTGAAACTGTAGGGAATGTAAACTCGAAATGGCTCATTTAGAACAGTTATTGCTCATAACCCGATTATTTTAAATTTAAATTAGCAACACCATTTCTGTATTTTCTATTCTCCATCCAGTTCCAATGGATCATCCATCCTGCCATCCCTTTGAGTGAGAGAACAGATTTAAGTACACACGCGCACATAATAGATACGGAGAAGAATACAAATGACAAGTGTCTGACGAACACAGTGATAAAGAATCGAAAGAGGACCGCCGCATGATGATGCTGTTGGATTGGATGATGATGGGTGATAAACTTGATTATGTCAGAGGAAGAGAATGGAAACATTCTTATTCGGCAGATTTGTGGCAACAAACCTTTTTCCAGTTTCCTGTTTTGAATGATTGGATTGGACAGAGAAAAAAAGATGAGTAATGGGTTAAAACTTAGGACTTTTGGAAAGCTGGTTTCCAGAACATTCTGGATGATTTTCCCTGATTCTTGCCCCCTGTTCGTCACTTTCCAAGATGAAAATTCAACGAATAGACTTCCAACTTCCGGAATCCGGGTTAAAACCACCGGGGACCACCCAGTTTTACAACCCAAAATCCTCAAAAAACGTCTTCCTCTAAATTAAGTCTCTATTTTTCTCAAATTTACCGCAATGGCCTTGATGAAGTCCCCAAGTTTGGGAGGTCGGTTAATCCTCCCATCCTAAAATCGAGACCAATTATTTTTACTCTTCCTACGTCTTCTCCCACTCTTCTGCAGTTTTCTATACAATGTTTCTTTTTTTACCTTTTTTTTGTGAAATATTTTGAAATATAAAGAAAAAGGAAAAATTTCGAGCT</canonical>
            <polymorphic>TTTCTCCTTTTTCCACCTCTATTCTTCTCTTTTTACTTCACTTTGCCATTAAATTCGCCCTCCTTTTTTTTGTGAGTTATTGGATTTCTTTTGGACTTTTGAATAAATTGGGTGGCTTGTTACAATTGGAATTATCAAGCCTAACGGAAATAATTTGTTTAGTCTGAAACTGTAGGGAATGTAAACTCGAAATGGCTCATTTAGAACAGTTATTGCTCATAACCCGATTATTTTAAATTTAAATTAGCAACACCATTTCTGTATTTTCTATTCTCCATCCAGTTCCAATGGATCATCCATCCTGCCATCCCTTTGAGTGAGAGAACAGATTTAAGTACACACGCGCACATAATAGATACGGAGAAGAATACAAATGACAAGTGTCTGACGAACACAGTGATAAAGAATCGAAAGAGGACCGCCGCATGATGATGCTGTTGGATTGGATGATGATGGGTGATAAACTTGATTATGTCAGAGGAAGAGAATGGAAACATTCKTATTCGGCAGATTTGTGGCAACAAACCTTTTTCCAGTTTCCTGTTTTGAATGATTGGATTGGACAGAGAAAAAAAGATGAGTAATGGGTTAAAACTTAGGACTTTTGGAAAGCTGGTTTCCAGAACATTCTGGATGATTTTCCCTGATTCTTGCCCCCTGTTCGTCACTTTCCAAGATGAAAATTCAACGAATAGACTTCCAACTTCCGGAATCCGGGTTAAAACCACCGGGGACCACCCAGTTTTACAACCCAAAATCCTCAAAAAACGTCTTCCTCTAAATTAAGTCTCTATTTTTCTCAAATTTACCGCAATGGCCTTGATGAAGTCCCCAAGTTTGGGAGGTCGGTTAATCCTCCCATCCTAAAATCGAGACCAATTATTTTTACTCTTCCTACGTCTTCTCCCACTCTTCTGCAGTTTTCTATACAATGTTTCTTTTTTTACCTTTTTTTTGTGAAATATTTTGAAATATAAAGAAAAAGGAAAAATTTCGAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCACATAATAGATACGGAGAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTAACCCATTACTCATCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCACATAATAGATACGGAGAAGAATACAAATGACAAGTGTCTGACGAACACAGTGATAAAGAATCGAAAGAGGACCGCCGCATGATGATGCTGTTGGATTGGATGATGATGGGTGATAAACTTGATTATGTCAGAGGAAGAGAATGGAAACATTCTTATTCGGCAGATTTGTGGCAACAAACCTTTTTCCAGTTTCCTGTTTTGAATGATTGGATTGGACAGAGAAAAAAAGATGAGTAATGGGTTAAAA</canonical_amplicon>
		<polymorphic_amplicon>GCACATAATAGATACGGAGAAGAATACAAATGACAAGTGTCTGACGAACACAGTGATAAAGAATCGAAAGAGGACCGCCGCATGATGATGCTGTTGGATTGGATGATGATGGGTGATAAACTTGATTATGTCAGAGGAAGAGAATGGAAACATTCKTATTCGGCAGATTTGTGGCAACAAACCTTTTTCCAGTTTCCTGTTTTGAATGATTGGATTGGACAGAGAAAAAAAGATGAGTAATGGGTTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11588</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>46996</contig_pos>
        <strand>+</strand>
        <context>ATGATGCTGT[C/T]GGATTGGATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAACACAGTGATAAAGAATCGAAAGAGGACCGCCGCATGATGATGCTGT</left_flank>
        <right_flank>GGATTGGATGATGATGGGTGATAAACTTGATTATGTCAGAGGAAGAGAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCTATCAATTTAATTAGTTTACCAAACGCTTACCACAATTACTATACATTTCTACTTGTTTTCTCCTTTTTCCACCTCTATTCTTCTCTTTTTACTTCACTTTGCCATTAAATTCGCCCTCCTTTTTTTTGTGAGTTATTGGATTTCTTTTGGACTTTTGAATAAATTGGGTGGCTTGTTACAATTGGAATTATCAAGCCTAACGGAAATAATTTGTTTAGTCTGAAACTGTAGGGAATGTAAACTCGAAATGGCTCATTTAGAACAGTTATTGCTCATAACCCGATTATTTTAAATTTAAATTAGCAACACCATTTCTGTATTTTCTATTCTCCATCCAGTTCCAATGGATCATCCATCCTGCCATCCCTTTGAGTGAGAGAACAGATTTAAGTACACACGCGCACATAATAGATACGGAGAAGAATACAAATGACAAGTGTCTGACGAACACAGTGATAAAGAATCGAAAGAGGACCGCCGCATGATGATGCTGTTGGATTGGATGATGATGGGTGATAAACTTGATTATGTCAGAGGAAGAGAATGGAAACATTCTTATTCGGCAGATTTGTGGCAACAAACCTTTTTCCAGTTTCCTGTTTTGAATGATTGGATTGGACAGAGAAAAAAAGATGAGTAATGGGTTAAAACTTAGGACTTTTGGAAAGCTGGTTTCCAGAACATTCTGGATGATTTTCCCTGATTCTTGCCCCCTGTTCGTCACTTTCCAAGATGAAAATTCAACGAATAGACTTCCAACTTCCGGAATCCGGGTTAAAACCACCGGGGACCACCCAGTTTTACAACCCAAAATCCTCAAAAAACGTCTTCCTCTAAATTAAGTCTCTATTTTTCTCAAATTTACCGCAATGGCCTTGATGAAGTCCCCAAGTTTGGGAGGTCGGTTAATCCTCCCATCCTAAAATCGAGACCAATTATTTTTACTCTTCCTACGTCTTCTCCCACTCTTCTGCAGTTTTCTATACAATGTTTCT</canonical>
            <polymorphic>ATGCTATCAATTTAATTAGTTTACCAAACGCTTACCACAATTACTATACATTTCTACTTGTTTTCTCCTTTTTCCACCTCTATTCTTCTCTTTTTACTTCACTTTGCCATTAAATTCGCCCTCCTTTTTTTTGTGAGTTATTGGATTTCTTTTGGACTTTTGAATAAATTGGGTGGCTTGTTACAATTGGAATTATCAAGCCTAACGGAAATAATTTGTTTAGTCTGAAACTGTAGGGAATGTAAACTCGAAATGGCTCATTTAGAACAGTTATTGCTCATAACCCGATTATTTTAAATTTAAATTAGCAACACCATTTCTGTATTTTCTATTCTCCATCCAGTTCCAATGGATCATCCATCCTGCCATCCCTTTGAGTGAGAGAACAGATTTAAGTACACACGCGCACATAATAGATACGGAGAAGAATACAAATGACAAGTGTCTGACGAACACAGTGATAAAGAATCGAAAGAGGACCGCCGCATGATGATGCTGTYGGATTGGATGATGATGGGTGATAAACTTGATTATGTCAGAGGAAGAGAATGGAAACATTCTTATTCGGCAGATTTGTGGCAACAAACCTTTTTCCAGTTTCCTGTTTTGAATGATTGGATTGGACAGAGAAAAAAAGATGAGTAATGGGTTAAAACTTAGGACTTTTGGAAAGCTGGTTTCCAGAACATTCTGGATGATTTTCCCTGATTCTTGCCCCCTGTTCGTCACTTTCCAAGATGAAAATTCAACGAATAGACTTCCAACTTCCGGAATCCGGGTTAAAACCACCGGGGACCACCCAGTTTTACAACCCAAAATCCTCAAAAAACGTCTTCCTCTAAATTAAGTCTCTATTTTTCTCAAATTTACCGCAATGGCCTTGATGAAGTCCCCAAGTTTGGGAGGTCGGTTAATCCTCCCATCCTAAAATCGAGACCAATTATTTTTACTCTTCCTACGTCTTCTCCCACTCTTCTGCAGTTTTCTATACAATGTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCACATAATAGATACGGAGAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTAACCCATTACTCATCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCACATAATAGATACGGAGAAGAATACAAATGACAAGTGTCTGACGAACACAGTGATAAAGAATCGAAAGAGGACCGCCGCATGATGATGCTGTTGGATTGGATGATGATGGGTGATAAACTTGATTATGTCAGAGGAAGAGAATGGAAACATTCTTATTCGGCAGATTTGTGGCAACAAACCTTTTTCCAGTTTCCTGTTTTGAATGATTGGATTGGACAGAGAAAAAAAGATGAGTAATGGGTTAAAA</canonical_amplicon>
		<polymorphic_amplicon>GCACATAATAGATACGGAGAAGAATACAAATGACAAGTGTCTGACGAACACAGTGATAAAGAATCGAAAGAGGACCGCCGCATGATGATGCTGTYGGATTGGATGATGATGGGTGATAAACTTGATTATGTCAGAGGAAGAGAATGGAAACATTCTTATTCGGCAGATTTGTGGCAACAAACCTTTTTCCAGTTTCCTGTTTTGAATGATTGGATTGGACAGAGAAAAAAAGATGAGTAATGGGTTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11589</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>46773</contig_pos>
        <strand>+</strand>
        <context>ACAGTTAKTG[C/T]TCATAACCCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAACTGTAGGGAATGTAAACTCGAAATGGCTCATTTAGAACAGTTATTG</left_flank>
        <right_flank>TCATAACCCGATTATTTTAAATTTAAATTAGCAACACCATTTCTGTATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGACATCTTCTAACCAATTCAAATCTTGTCTGGTTTAATCTTTCAATTGCCAATTCTTTGAAATTCTTTACAAGTACCTAGGAATCCTAAGCATCCAGTAAACTAGGAGATACCTAATCGTATCACTTCAAAAAAAACCATGTTAGCCTGAAAGACTACGCCCCTTTCCTATCTTCCGCCCAGTCTTTTTTGTTACATTTGCCATCTGAAGAATGTTTTGAATGCTATCAATTTAATTAGTTTACCAAACGCTTACCACAATTACTATACATTTCTACTTGTTTTCTCCTTTTTCCACCTCTATTCTTCTCTTTTTACTTCACTTTGCCATTAAATTCGCCCTCCTTTTTTTTGTGAGTTATTGGATTTCTTTTGGACTTTTGAATAAATTGGGTGGCTTGTTACAATTGGAATTATCAAGCCTAACGGAAATAATTTGTTTAGTCTGAAACTGTAGGGAATGTAAACTCGAAATGGCTCATTTAGAACAGTTATTGCTCATAACCCGATTATTTTAAATTTAAATTAGCAACACCATTTCTGTATTTTCTATTCTCCATCCAGTTCCAATGGATCATCCATCCTGCCATCCCTTTGAGTGAGAGAACAGATTTAAGTACACACGCGCACATAATAGATACGGAGAAGAATACAAATGACAAGTGTCTGACGAACACAGTGATAAAGAATCGAAAGAGGACCGCCGCATGATGATGCTGTTGGATTGGATGATGATGGGTGATAAACTTGATTATGTCAGAGGAAGAGAATGGAAACATTCTTATTCGGCAGATTTGTGGCAACAAACCTTTTTCCAGTTTCCTGTTTTGAATGATTGGATTGGACAGAGAAAAAAAGATGAGTAATGGGTTAAAACTTAGGACTTTTGGAAAGCTGGTTTCCAGAACATTCTGGATGATTTTCCCTGATTCTTGCCCCCTGTTCGTCACTTTCCAAGATGAAAATTCAACGAATAGACTTCCAACTTCCGGAATCCG</canonical>
            <polymorphic>CTTGACATCTTCTAACCAATTCAAATCTTGTCTGGTTTAATCTTTCAATTGCCAATTCTTTGAAATTCTTTACAAGTACCTAGGAATCCTAAGCATCCAGTAAACTAGGAGATACCTAATCGTATCACTTCAAAAAAAACCATGTTAGCCTGAAAGACTACGCCCCTTTCCTATCTTCCGCCCAGTCTTTTTTGTTACATTTGCCATCTGAAGAATGTTTTGAATGCTATCAATTTAATTAGTTTACCAAACGCTTACCACAATTACTATACATTTCTACTTGTTTTCTCCTTTTTCCACCTCTATTCTTCTCTTTTTACTTCACTTTGCCATTAAATTCGCCCTCCTTTTTTTTGTGAGTTATTGGATTTCTTTTGGACTTTTGAATAAATTGGGTGGCTTGTTACAATTGGAATTATCAAGCCTAACGGAAATAATTTGTTTAGTCTGAAACTGTAGGGAATGTAAACTCGAAATGGCTCATTTAGAACAGTTATTGYTCATAACCCGATTATTTTAAATTTAAATTAGCAACACCATTTCTGTATTTTCTATTCTCCATCCAGTTCCAATGGATCATCCATCCTGCCATCCCTTTGAGTGAGAGAACAGATTTAAGTACACACGCGCACATAATAGATACGGAGAAGAATACAAATGACAAGTGTCTGACGAACACAGTGATAAAGAATCGAAAGAGGACCGCCGCATGATGATGCTGTTGGATTGGATGATGATGGGTGATAAACTTGATTATGTCAGAGGAAGAGAATGGAAACATTCTTATTCGGCAGATTTGTGGCAACAAACCTTTTTCCAGTTTCCTGTTTTGAATGATTGGATTGGACAGAGAAAAAAAGATGAGTAATGGGTTAAAACTTAGGACTTTTGGAAAGCTGGTTTCCAGAACATTCTGGATGATTTTCCCTGATTCTTGCCCCCTGTTCGTCACTTTCCAAGATGAAAATTCAACGAATAGACTTCCAACTTCCGGAATCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTTCACTTTGCCATTAAATTC</pcr_primer_p1>
		<pcr_primer_p2>CTGGATGGAGAATAGAAAATACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TACTTCACTTTGCCATTAAATTCGCCCTCCTTTTTTTTGTGAGTTATTGGATTTCTTTTGGACTTTTGAATAAATTGGGTGGCTTGTTACAATTGGAATTATCAAGCCTAACGGAAATAATTTGTTTAGTCTGAAACTGTAGGGAATGTAAACTCGAAATGGCTCATTTAGAACAGTTATTGCTCATAACCCGATTATTTTAAATTTAAATTAGCAACACCATTTCTGTATTTTCTATTCTCCATCCAG</canonical_amplicon>
		<polymorphic_amplicon>TACTTCACTTTGCCATTAAATTCGCCCTCCTTTTTTTTGTGAGTTATTGGATTTCTTTTGGACTTTTGAATAAATTGGGTGGCTTGTTACAATTGGAATTATCAAGCCTAACGGAAATAATTTGTTTAGTCTGAAACTGTAGGGAATGTAAACTCGAAATGGCTCATTTAGAACAGTTATTGYTCATAACCCGATTATTTTAAATTTAAATTAGCAACACCATTTCTGTATTTTCTATTCTCCATCCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11590</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>46770</contig_pos>
        <strand>+</strand>
        <context>AGAACAGTTA[G/T]TGYTCATAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTGAAACTGTAGGGAATGTAAACTCGAAATGGCTCATTTAGAACAGTTA</left_flank>
        <right_flank>TGCTCATAACCCGATTATTTTAAATTTAAATTAGCAACACCATTTCTGTA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCTTGACATCTTCTAACCAATTCAAATCTTGTCTGGTTTAATCTTTCAATTGCCAATTCTTTGAAATTCTTTACAAGTACCTAGGAATCCTAAGCATCCAGTAAACTAGGAGATACCTAATCGTATCACTTCAAAAAAAACCATGTTAGCCTGAAAGACTACGCCCCTTTCCTATCTTCCGCCCAGTCTTTTTTGTTACATTTGCCATCTGAAGAATGTTTTGAATGCTATCAATTTAATTAGTTTACCAAACGCTTACCACAATTACTATACATTTCTACTTGTTTTCTCCTTTTTCCACCTCTATTCTTCTCTTTTTACTTCACTTTGCCATTAAATTCGCCCTCCTTTTTTTTGTGAGTTATTGGATTTCTTTTGGACTTTTGAATAAATTGGGTGGCTTGTTACAATTGGAATTATCAAGCCTAACGGAAATAATTTGTTTAGTCTGAAACTGTAGGGAATGTAAACTCGAAATGGCTCATTTAGAACAGTTATTGCTCATAACCCGATTATTTTAAATTTAAATTAGCAACACCATTTCTGTATTTTCTATTCTCCATCCAGTTCCAATGGATCATCCATCCTGCCATCCCTTTGAGTGAGAGAACAGATTTAAGTACACACGCGCACATAATAGATACGGAGAAGAATACAAATGACAAGTGTCTGACGAACACAGTGATAAAGAATCGAAAGAGGACCGCCGCATGATGATGCTGTTGGATTGGATGATGATGGGTGATAAACTTGATTATGTCAGAGGAAGAGAATGGAAACATTCTTATTCGGCAGATTTGTGGCAACAAACCTTTTTCCAGTTTCCTGTTTTGAATGATTGGATTGGACAGAGAAAAAAAGATGAGTAATGGGTTAAAACTTAGGACTTTTGGAAAGCTGGTTTCCAGAACATTCTGGATGATTTTCCCTGATTCTTGCCCCCTGTTCGTCACTTTCCAAGATGAAAATTCAACGAATAGACTTCCAACTTCCGGAAT</canonical>
            <polymorphic>ACTCTTGACATCTTCTAACCAATTCAAATCTTGTCTGGTTTAATCTTTCAATTGCCAATTCTTTGAAATTCTTTACAAGTACCTAGGAATCCTAAGCATCCAGTAAACTAGGAGATACCTAATCGTATCACTTCAAAAAAAACCATGTTAGCCTGAAAGACTACGCCCCTTTCCTATCTTCCGCCCAGTCTTTTTTGTTACATTTGCCATCTGAAGAATGTTTTGAATGCTATCAATTTAATTAGTTTACCAAACGCTTACCACAATTACTATACATTTCTACTTGTTTTCTCCTTTTTCCACCTCTATTCTTCTCTTTTTACTTCACTTTGCCATTAAATTCGCCCTCCTTTTTTTTGTGAGTTATTGGATTTCTTTTGGACTTTTGAATAAATTGGGTGGCTTGTTACAATTGGAATTATCAAGCCTAACGGAAATAATTTGTTTAGTCTGAAACTGTAGGGAATGTAAACTCGAAATGGCTCATTTAGAACAGTTAKTGCTCATAACCCGATTATTTTAAATTTAAATTAGCAACACCATTTCTGTATTTTCTATTCTCCATCCAGTTCCAATGGATCATCCATCCTGCCATCCCTTTGAGTGAGAGAACAGATTTAAGTACACACGCGCACATAATAGATACGGAGAAGAATACAAATGACAAGTGTCTGACGAACACAGTGATAAAGAATCGAAAGAGGACCGCCGCATGATGATGCTGTTGGATTGGATGATGATGGGTGATAAACTTGATTATGTCAGAGGAAGAGAATGGAAACATTCTTATTCGGCAGATTTGTGGCAACAAACCTTTTTCCAGTTTCCTGTTTTGAATGATTGGATTGGACAGAGAAAAAAAGATGAGTAATGGGTTAAAACTTAGGACTTTTGGAAAGCTGGTTTCCAGAACATTCTGGATGATTTTCCCTGATTCTTGCCCCCTGTTCGTCACTTTCCAAGATGAAAATTCAACGAATAGACTTCCAACTTCCGGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTTCACTTTGCCATTAAATTC</pcr_primer_p1>
		<pcr_primer_p2>CTGGATGGAGAATAGAAAATACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TACTTCACTTTGCCATTAAATTCGCCCTCCTTTTTTTTGTGAGTTATTGGATTTCTTTTGGACTTTTGAATAAATTGGGTGGCTTGTTACAATTGGAATTATCAAGCCTAACGGAAATAATTTGTTTAGTCTGAAACTGTAGGGAATGTAAACTCGAAATGGCTCATTTAGAACAGTTATTGCTCATAACCCGATTATTTTAAATTTAAATTAGCAACACCATTTCTGTATTTTCTATTCTCCATCCAG</canonical_amplicon>
		<polymorphic_amplicon>TACTTCACTTTGCCATTAAATTCGCCCTCCTTTTTTTTGTGAGTTATTGGATTTCTTTTGGACTTTTGAATAAATTGGGTGGCTTGTTACAATTGGAATTATCAAGCCTAACGGAAATAATTTGTTTAGTCTGAAACTGTAGGGAATGTAAACTCGAAATGGCTCATTTAGAACAGTTAKTGCTCATAACCCGATTATTTTAAATTTAAATTAGCAACACCATTTCTGTATTTTCTATTCTCCATCCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11591</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>46759</contig_pos>
        <strand>+</strand>
        <context>ATGGCTCATW[C/T]AGAACAGTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTGTTTAGTCTGAAACTGTAGGGAATGTAAACTCGAAATGGCTCATT</left_flank>
        <right_flank>AGAACAGTTATTGCTCATAACCCGATTATTTTAAATTTAAATTAGCAACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCCGAACAGACTCTTGACATCTTCTAACCAATTCAAATCTTGTCTGGTTTAATCTTTCAATTGCCAATTCTTTGAAATTCTTTACAAGTACCTAGGAATCCTAAGCATCCAGTAAACTAGGAGATACCTAATCGTATCACTTCAAAAAAAACCATGTTAGCCTGAAAGACTACGCCCCTTTCCTATCTTCCGCCCAGTCTTTTTTGTTACATTTGCCATCTGAAGAATGTTTTGAATGCTATCAATTTAATTAGTTTACCAAACGCTTACCACAATTACTATACATTTCTACTTGTTTTCTCCTTTTTCCACCTCTATTCTTCTCTTTTTACTTCACTTTGCCATTAAATTCGCCCTCCTTTTTTTTGTGAGTTATTGGATTTCTTTTGGACTTTTGAATAAATTGGGTGGCTTGTTACAATTGGAATTATCAAGCCTAACGGAAATAATTTGTTTAGTCTGAAACTGTAGGGAATGTAAACTCGAAATGGCTCATTTAGAACAGTTATTGCTCATAACCCGATTATTTTAAATTTAAATTAGCAACACCATTTCTGTATTTTCTATTCTCCATCCAGTTCCAATGGATCATCCATCCTGCCATCCCTTTGAGTGAGAGAACAGATTTAAGTACACACGCGCACATAATAGATACGGAGAAGAATACAAATGACAAGTGTCTGACGAACACAGTGATAAAGAATCGAAAGAGGACCGCCGCATGATGATGCTGTTGGATTGGATGATGATGGGTGATAAACTTGATTATGTCAGAGGAAGAGAATGGAAACATTCTTATTCGGCAGATTTGTGGCAACAAACCTTTTTCCAGTTTCCTGTTTTGAATGATTGGATTGGACAGAGAAAAAAAGATGAGTAATGGGTTAAAACTTAGGACTTTTGGAAAGCTGGTTTCCAGAACATTCTGGATGATTTTCCCTGATTCTTGCCCCCTGTTCGTCACTTTCCAAGATGAAAATTCAACGAATAGACTTCCA</canonical>
            <polymorphic>GTCCCGAACAGACTCTTGACATCTTCTAACCAATTCAAATCTTGTCTGGTTTAATCTTTCAATTGCCAATTCTTTGAAATTCTTTACAAGTACCTAGGAATCCTAAGCATCCAGTAAACTAGGAGATACCTAATCGTATCACTTCAAAAAAAACCATGTTAGCCTGAAAGACTACGCCCCTTTCCTATCTTCCGCCCAGTCTTTTTTGTTACATTTGCCATCTGAAGAATGTTTTGAATGCTATCAATTTAATTAGTTTACCAAACGCTTACCACAATTACTATACATTTCTACTTGTTTTCTCCTTTTTCCACCTCTATTCTTCTCTTTTTACTTCACTTTGCCATTAAATTCGCCCTCCTTTTTTTTGTGAGTTATTGGATTTCTTTTGGACTTTTGAATAAATTGGGTGGCTTGTTACAATTGGAATTATCAAGCCTAACGGAAATAATTTGTTTAGTCTGAAACTGTAGGGAATGTAAACTCGAAATGGCTCATTYAGAACAGTTATTGCTCATAACCCGATTATTTTAAATTTAAATTAGCAACACCATTTCTGTATTTTCTATTCTCCATCCAGTTCCAATGGATCATCCATCCTGCCATCCCTTTGAGTGAGAGAACAGATTTAAGTACACACGCGCACATAATAGATACGGAGAAGAATACAAATGACAAGTGTCTGACGAACACAGTGATAAAGAATCGAAAGAGGACCGCCGCATGATGATGCTGTTGGATTGGATGATGATGGGTGATAAACTTGATTATGTCAGAGGAAGAGAATGGAAACATTCTTATTCGGCAGATTTGTGGCAACAAACCTTTTTCCAGTTTCCTGTTTTGAATGATTGGATTGGACAGAGAAAAAAAGATGAGTAATGGGTTAAAACTTAGGACTTTTGGAAAGCTGGTTTCCAGAACATTCTGGATGATTTTCCCTGATTCTTGCCCCCTGTTCGTCACTTTCCAAGATGAAAATTCAACGAATAGACTTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTTCACTTTGCCATTAAATTC</pcr_primer_p1>
		<pcr_primer_p2>CTGGATGGAGAATAGAAAATACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TACTTCACTTTGCCATTAAATTCGCCCTCCTTTTTTTTGTGAGTTATTGGATTTCTTTTGGACTTTTGAATAAATTGGGTGGCTTGTTACAATTGGAATTATCAAGCCTAACGGAAATAATTTGTTTAGTCTGAAACTGTAGGGAATGTAAACTCGAAATGGCTCATTTAGAACAGTTATTGCTCATAACCCGATTATTTTAAATTTAAATTAGCAACACCATTTCTGTATTTTCTATTCTCCATCCAG</canonical_amplicon>
		<polymorphic_amplicon>TACTTCACTTTGCCATTAAATTCGCCCTCCTTTTTTTTGTGAGTTATTGGATTTCTTTTGGACTTTTGAATAAATTGGGTGGCTTGTTACAATTGGAATTATCAAGCCTAACGGAAATAATTTGTTTAGTCTGAAACTGTAGGGAATGTAAACTCGAAATGGCTCATTYAGAACAGTTATTGCTCATAACCCGATTATTTTAAATTTAAATTAGCAACACCATTTCTGTATTTTCTATTCTCCATCCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11592</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>46758</contig_pos>
        <strand>+</strand>
        <context>AATGGCTCAT[A/T]YAGAACAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAATTTGTTTAGTCTGAAACTGTAGGGAATGTAAACTCGAAATGGCTCAT</left_flank>
        <right_flank>TAGAACAGTTATTGCTCATAACCCGATTATTTTAAATTTAAATTAGCAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTCCCGAACAGACTCTTGACATCTTCTAACCAATTCAAATCTTGTCTGGTTTAATCTTTCAATTGCCAATTCTTTGAAATTCTTTACAAGTACCTAGGAATCCTAAGCATCCAGTAAACTAGGAGATACCTAATCGTATCACTTCAAAAAAAACCATGTTAGCCTGAAAGACTACGCCCCTTTCCTATCTTCCGCCCAGTCTTTTTTGTTACATTTGCCATCTGAAGAATGTTTTGAATGCTATCAATTTAATTAGTTTACCAAACGCTTACCACAATTACTATACATTTCTACTTGTTTTCTCCTTTTTCCACCTCTATTCTTCTCTTTTTACTTCACTTTGCCATTAAATTCGCCCTCCTTTTTTTTGTGAGTTATTGGATTTCTTTTGGACTTTTGAATAAATTGGGTGGCTTGTTACAATTGGAATTATCAAGCCTAACGGAAATAATTTGTTTAGTCTGAAACTGTAGGGAATGTAAACTCGAAATGGCTCATTTAGAACAGTTATTGCTCATAACCCGATTATTTTAAATTTAAATTAGCAACACCATTTCTGTATTTTCTATTCTCCATCCAGTTCCAATGGATCATCCATCCTGCCATCCCTTTGAGTGAGAGAACAGATTTAAGTACACACGCGCACATAATAGATACGGAGAAGAATACAAATGACAAGTGTCTGACGAACACAGTGATAAAGAATCGAAAGAGGACCGCCGCATGATGATGCTGTTGGATTGGATGATGATGGGTGATAAACTTGATTATGTCAGAGGAAGAGAATGGAAACATTCTTATTCGGCAGATTTGTGGCAACAAACCTTTTTCCAGTTTCCTGTTTTGAATGATTGGATTGGACAGAGAAAAAAAGATGAGTAATGGGTTAAAACTTAGGACTTTTGGAAAGCTGGTTTCCAGAACATTCTGGATGATTTTCCCTGATTCTTGCCCCCTGTTCGTCACTTTCCAAGATGAAAATTCAACGAATAGACTTCC</canonical>
            <polymorphic>CGTCCCGAACAGACTCTTGACATCTTCTAACCAATTCAAATCTTGTCTGGTTTAATCTTTCAATTGCCAATTCTTTGAAATTCTTTACAAGTACCTAGGAATCCTAAGCATCCAGTAAACTAGGAGATACCTAATCGTATCACTTCAAAAAAAACCATGTTAGCCTGAAAGACTACGCCCCTTTCCTATCTTCCGCCCAGTCTTTTTTGTTACATTTGCCATCTGAAGAATGTTTTGAATGCTATCAATTTAATTAGTTTACCAAACGCTTACCACAATTACTATACATTTCTACTTGTTTTCTCCTTTTTCCACCTCTATTCTTCTCTTTTTACTTCACTTTGCCATTAAATTCGCCCTCCTTTTTTTTGTGAGTTATTGGATTTCTTTTGGACTTTTGAATAAATTGGGTGGCTTGTTACAATTGGAATTATCAAGCCTAACGGAAATAATTTGTTTAGTCTGAAACTGTAGGGAATGTAAACTCGAAATGGCTCATWTAGAACAGTTATTGCTCATAACCCGATTATTTTAAATTTAAATTAGCAACACCATTTCTGTATTTTCTATTCTCCATCCAGTTCCAATGGATCATCCATCCTGCCATCCCTTTGAGTGAGAGAACAGATTTAAGTACACACGCGCACATAATAGATACGGAGAAGAATACAAATGACAAGTGTCTGACGAACACAGTGATAAAGAATCGAAAGAGGACCGCCGCATGATGATGCTGTTGGATTGGATGATGATGGGTGATAAACTTGATTATGTCAGAGGAAGAGAATGGAAACATTCTTATTCGGCAGATTTGTGGCAACAAACCTTTTTCCAGTTTCCTGTTTTGAATGATTGGATTGGACAGAGAAAAAAAGATGAGTAATGGGTTAAAACTTAGGACTTTTGGAAAGCTGGTTTCCAGAACATTCTGGATGATTTTCCCTGATTCTTGCCCCCTGTTCGTCACTTTCCAAGATGAAAATTCAACGAATAGACTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTTCACTTTGCCATTAAATTC</pcr_primer_p1>
		<pcr_primer_p2>CTGGATGGAGAATAGAAAATACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TACTTCACTTTGCCATTAAATTCGCCCTCCTTTTTTTTGTGAGTTATTGGATTTCTTTTGGACTTTTGAATAAATTGGGTGGCTTGTTACAATTGGAATTATCAAGCCTAACGGAAATAATTTGTTTAGTCTGAAACTGTAGGGAATGTAAACTCGAAATGGCTCATTTAGAACAGTTATTGCTCATAACCCGATTATTTTAAATTTAAATTAGCAACACCATTTCTGTATTTTCTATTCTCCATCCAG</canonical_amplicon>
		<polymorphic_amplicon>TACTTCACTTTGCCATTAAATTCGCCCTCCTTTTTTTTGTGAGTTATTGGATTTCTTTTGGACTTTTGAATAAATTGGGTGGCTTGTTACAATTGGAATTATCAAGCCTAACGGAAATAATTTGTTTAGTCTGAAACTGTAGGGAATGTAAACTCGAAATGGCTCATWTAGAACAGTTATTGCTCATAACCCGATTATTTTAAATTTAAATTAGCAACACCATTTCTGTATTTTCTATTCTCCATCCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11593</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>46578</contig_pos>
        <strand>+</strand>
        <context>TTCCACCTCT[A/C]TTCTTCTCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTACCACAATTACTATACATTTCTACTTGTTTTCTCCTTTTTCCACCTCT</left_flank>
        <right_flank>TTCTTCTCTTTTTACTTCACTTTGCCATTAAATTCGCCCTCCTTTTTTTT</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATCTCTCTTGATATGTTTAAAATTATCGGCATTTTTGCCCGACTTTTTTAGATTAATATAGATTAATTTCCCATATCCCTAATTTTCGATATTTCCAATTTCACTGACGACCTTCGGAAAACTCAAGAACTTCCGATTGCTTATATGACCAATAAACGTCATTATTTGAACATTTGATCGTCCCGAACAGACTCTTGACATCTTCTAACCAATTCAAATCTTGTCTGGTTTAATCTTTCAATTGCCAATTCTTTGAAATTCTTTACAAGTACCTAGGAATCCTAAGCATCCAGTAAACTAGGAGATACCTAATCGTATCACTTCAAAAAAAACCATGTTAGCCTGAAAGACTACGCCCCTTTCCTATCTTCCGCCCAGTCTTTTTTGTTACATTTGCCATCTGAAGAATGTTTTGAATGCTATCAATTTAATTAGTTTACCAAACGCTTACCACAATTACTATACATTTCTACTTGTTTTCTCCTTTTTCCACCTCTATTCTTCTCTTTTTACTTCACTTTGCCATTAAATTCGCCCTCCTTTTTTTTGTGAGTTATTGGATTTCTTTTGGACTTTTGAATAAATTGGGTGGCTTGTTACAATTGGAATTATCAAGCCTAACGGAAATAATTTGTTTAGTCTGAAACTGTAGGGAATGTAAACTCGAAATGGCTCATTTAGAACAGTTATTGCTCATAACCCGATTATTTTAAATTTAAATTAGCAACACCATTTCTGTATTTTCTATTCTCCATCCAGTTCCAATGGATCATCCATCCTGCCATCCCTTTGAGTGAGAGAACAGATTTAAGTACACACGCGCACATAATAGATACGGAGAAGAATACAAATGACAAGTGTCTGACGAACACAGTGATAAAGAATCGAAAGAGGACCGCCGCATGATGATGCTGTTGGATTGGATGATGATGGGTGATAAACTTGATTATGTCAGAGGAAGAGAATGGAAACATTCTTATTCGGCAGATTTGTGGCAA</canonical>
            <polymorphic>CCATCTCTCTTGATATGTTTAAAATTATCGGCATTTTTGCCCGACTTTTTTAGATTAATATAGATTAATTTCCCATATCCCTAATTTTCGATATTTCCAATTTCACTGACGACCTTCGGAAAACTCAAGAACTTCCGATTGCTTATATGACCAATAAACGTCATTATTTGAACATTTGATCGTCCCGAACAGACTCTTGACATCTTCTAACCAATTCAAATCTTGTCTGGTTTAATCTTTCAATTGCCAATTCTTTGAAATTCTTTACAAGTACCTAGGAATCCTAAGCATCCAGTAAACTAGGAGATACCTAATCGTATCACTTCAAAAAAAACCATGTTAGCCTGAAAGACTACGCCCCTTTCCTATCTTCCGCCCAGTCTTTTTTGTTACATTTGCCATCTGAAGAATGTTTTGAATGCTATCAATTTAATTAGTTTACCAAACGCTTACCACAATTACTATACATTTCTACTTGTTTTCTCCTTTTTCCACCTCTMTTCTTCTCTTTTTACTTCACTTTGCCATTAAATTCGCCCTCCTTTTTTTTGTGAGTTATTGGATTTCTTTTGGACTTTTGAATAAATTGGGTGGCTTGTTACAATTGGAATTATCAAGCCTAACGGAAATAATTTGTTTAGTCTGAAACTGTAGGGAATGTAAACTCGAAATGGCTCATTTAGAACAGTTATTGCTCATAACCCGATTATTTTAAATTTAAATTAGCAACACCATTTCTGTATTTTCTATTCTCCATCCAGTTCCAATGGATCATCCATCCTGCCATCCCTTTGAGTGAGAGAACAGATTTAAGTACACACGCGCACATAATAGATACGGAGAAGAATACAAATGACAAGTGTCTGACGAACACAGTGATAAAGAATCGAAAGAGGACCGCCGCATGATGATGCTGTTGGATTGGATGATGATGGGTGATAAACTTGATTATGTCAGAGGAAGAGAATGGAAACATTCTTATTCGGCAGATTTGTGGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTTTTGAATGCTATCAATTT</pcr_primer_p1>
		<pcr_primer_p2>CCCTACAGTTTCAGACTAAACAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATGTTTTGAATGCTATCAATTTAATTAGTTTACCAAACGCTTACCACAATTACTATACATTTCTACTTGTTTTCTCCTTTTTCCACCTCTATTCTTCTCTTTTTACTTCACTTTGCCATTAAATTCGCCCTCCTTTTTTTTGTGAGTTATTGGATTTCTTTTGGACTTTTGAATAAATTGGGTGGCTTGTTACAATTGGAATTATCAAGCCTAACGGAAATAATTTGTTTAGTCTGAAACTGTAGGG</canonical_amplicon>
		<polymorphic_amplicon>AATGTTTTGAATGCTATCAATTTAATTAGTTTACCAAACGCTTACCACAATTACTATACATTTCTACTTGTTTTCTCCTTTTTCCACCTCTMTTCTTCTCTTTTTACTTCACTTTGCCATTAAATTCGCCCTCCTTTTTTTTGTGAGTTATTGGATTTCTTTTGGACTTTTGAATAAATTGGGTGGCTTGTTACAATTGGAATTATCAAGCCTAACGGAAATAATTTGTTTAGTCTGAAACTGTAGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11594</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>46511</contig_pos>
        <strand>+</strand>
        <context>TATCAATTTA[A/G]TTAGTTTACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTGTTACATTTGCCATCTGAAGAATGTTTTGAATGCTATCAATTTA</left_flank>
        <right_flank>TTAGTTTACCAAACGCTTACCACAATTACTATACATTTCTACTTGTTTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTAATTGAAGAAGACGCAAGTTTCAGTGAATTTAGAATTTCAGCCGCCGTTCGTACGCTTTTAGGCCATCTCTCTTGATATGTTTAAAATTATCGGCATTTTTGCCCGACTTTTTTAGATTAATATAGATTAATTTCCCATATCCCTAATTTTCGATATTTCCAATTTCACTGACGACCTTCGGAAAACTCAAGAACTTCCGATTGCTTATATGACCAATAAACGTCATTATTTGAACATTTGATCGTCCCGAACAGACTCTTGACATCTTCTAACCAATTCAAATCTTGTCTGGTTTAATCTTTCAATTGCCAATTCTTTGAAATTCTTTACAAGTACCTAGGAATCCTAAGCATCCAGTAAACTAGGAGATACCTAATCGTATCACTTCAAAAAAAACCATGTTAGCCTGAAAGACTACGCCCCTTTCCTATCTTCCGCCCAGTCTTTTTTGTTACATTTGCCATCTGAAGAATGTTTTGAATGCTATCAATTTAATTAGTTTACCAAACGCTTACCACAATTACTATACATTTCTACTTGTTTTCTCCTTTTTCCACCTCTATTCTTCTCTTTTTACTTCACTTTGCCATTAAATTCGCCCTCCTTTTTTTTGTGAGTTATTGGATTTCTTTTGGACTTTTGAATAAATTGGGTGGCTTGTTACAATTGGAATTATCAAGCCTAACGGAAATAATTTGTTTAGTCTGAAACTGTAGGGAATGTAAACTCGAAATGGCTCATTTAGAACAGTTATTGCTCATAACCCGATTATTTTAAATTTAAATTAGCAACACCATTTCTGTATTTTCTATTCTCCATCCAGTTCCAATGGATCATCCATCCTGCCATCCCTTTGAGTGAGAGAACAGATTTAAGTACACACGCGCACATAATAGATACGGAGAAGAATACAAATGACAAGTGTCTGACGAACACAGTGATAAAGAATCGAAAGAGGACCGCCGCATGATGATGCTGTTGGATTGGATGATGAT</canonical>
            <polymorphic>ATTTAATTGAAGAAGACGCAAGTTTCAGTGAATTTAGAATTTCAGCCGCCGTTCGTACGCTTTTAGGCCATCTCTCTTGATATGTTTAAAATTATCGGCATTTTTGCCCGACTTTTTTAGATTAATATAGATTAATTTCCCATATCCCTAATTTTCGATATTTCCAATTTCACTGACGACCTTCGGAAAACTCAAGAACTTCCGATTGCTTATATGACCAATAAACGTCATTATTTGAACATTTGATCGTCCCGAACAGACTCTTGACATCTTCTAACCAATTCAAATCTTGTCTGGTTTAATCTTTCAATTGCCAATTCTTTGAAATTCTTTACAAGTACCTAGGAATCCTAAGCATCCAGTAAACTAGGAGATACCTAATCGTATCACTTCAAAAAAAACCATGTTAGCCTGAAAGACTACGCCCCTTTCCTATCTTCCGCCCAGTCTTTTTTGTTACATTTGCCATCTGAAGAATGTTTTGAATGCTATCAATTTARTTAGTTTACCAAACGCTTACCACAATTACTATACATTTCTACTTGTTTTCTCCTTTTTCCACCTCTATTCTTCTCTTTTTACTTCACTTTGCCATTAAATTCGCCCTCCTTTTTTTTGTGAGTTATTGGATTTCTTTTGGACTTTTGAATAAATTGGGTGGCTTGTTACAATTGGAATTATCAAGCCTAACGGAAATAATTTGTTTAGTCTGAAACTGTAGGGAATGTAAACTCGAAATGGCTCATTTAGAACAGTTATTGCTCATAACCCGATTATTTTAAATTTAAATTAGCAACACCATTTCTGTATTTTCTATTCTCCATCCAGTTCCAATGGATCATCCATCCTGCCATCCCTTTGAGTGAGAGAACAGATTTAAGTACACACGCGCACATAATAGATACGGAGAAGAATACAAATGACAAGTGTCTGACGAACACAGTGATAAAGAATCGAAAGAGGACCGCCGCATGATGATGCTGTTGGATTGGATGATGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>198 184 167 123 98 92 83 36 10 6 3</canonical_bands>
                <polymorphic_bands>296 184 167 123 92 83 36 10 6 3</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>213 168 114 84 74 54 52 44 29 26 25 22 18 16 16 10 7 7 6 6 5 4</canonical_bands>
                <polymorphic_bands>213 168 114 84 74 54 52 44 30 29 26 22 18 16 16 10 7 7 6 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAGCATCCAGTAAACTAGGAGA</pcr_primer_p1>
		<pcr_primer_p2>AATTTAATGGCAAAGTGAAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAGCATCCAGTAAACTAGGAGATACCTAATCGTATCACTTCAAAAAAAACCATGTTAGCCTGAAAGACTACGCCCCTTTCCTATCTTCCGCCCAGTCTTTTTTGTTACATTTGCCATCTGAAGAATGTTTTGAATGCTATCAATTTAATTAGTTTACCAAACGCTTACCACAATTACTATACATTTCTACTTGTTTTCTCCTTTTTCCACCTCTATTCTTCTCTTTTTACTTCACTTTGCCATTAAATT</canonical_amplicon>
		<polymorphic_amplicon>TAAGCATCCAGTAAACTAGGAGATACCTAATCGTATCACTTCAAAAAAAACCATGTTAGCCTGAAAGACTACGCCCCTTTCCTATCTTCCGCCCAGTCTTTTTTGTTACATTTGCCATCTGAAGAATGTTTTGAATGCTATCAATTTARTTAGTTTACCAAACGCTTACCACAATTACTATACATTTCTACTTGTTTTCTCCTTTTTCCACCTCTATTCTTCTCTTTTTACTTCACTTTGCCATTAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11595</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>46477</contig_pos>
        <strand>+</strand>
        <context>GTTACATTTG[C/T]CATCTGAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGACTACGCCCCTTTCCTATCTTCCGCCCAGTCTTTTTTGTTACATTTG</left_flank>
        <right_flank>CATCTGAAGAATGTTTTGAATGCTATCAATTTAATTAGTTTACCAAACGC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATTGCCTTTATTTTTTTTACAAATTTTATTAAATTTAATTGAAGAAGACGCAAGTTTCAGTGAATTTAGAATTTCAGCCGCCGTTCGTACGCTTTTAGGCCATCTCTCTTGATATGTTTAAAATTATCGGCATTTTTGCCCGACTTTTTTAGATTAATATAGATTAATTTCCCATATCCCTAATTTTCGATATTTCCAATTTCACTGACGACCTTCGGAAAACTCAAGAACTTCCGATTGCTTATATGACCAATAAACGTCATTATTTGAACATTTGATCGTCCCGAACAGACTCTTGACATCTTCTAACCAATTCAAATCTTGTCTGGTTTAATCTTTCAATTGCCAATTCTTTGAAATTCTTTACAAGTACCTAGGAATCCTAAGCATCCAGTAAACTAGGAGATACCTAATCGTATCACTTCAAAAAAAACCATGTTAGCCTGAAAGACTACGCCCCTTTCCTATCTTCCGCCCAGTCTTTTTTGTTACATTTGCCATCTGAAGAATGTTTTGAATGCTATCAATTTAATTAGTTTACCAAACGCTTACCACAATTACTATACATTTCTACTTGTTTTCTCCTTTTTCCACCTCTATTCTTCTCTTTTTACTTCACTTTGCCATTAAATTCGCCCTCCTTTTTTTTGTGAGTTATTGGATTTCTTTTGGACTTTTGAATAAATTGGGTGGCTTGTTACAATTGGAATTATCAAGCCTAACGGAAATAATTTGTTTAGTCTGAAACTGTAGGGAATGTAAACTCGAAATGGCTCATTTAGAACAGTTATTGCTCATAACCCGATTATTTTAAATTTAAATTAGCAACACCATTTCTGTATTTTCTATTCTCCATCCAGTTCCAATGGATCATCCATCCTGCCATCCCTTTGAGTGAGAGAACAGATTTAAGTACACACGCGCACATAATAGATACGGAGAAGAATACAAATGACAAGTGTCTGACGAACACAGTGATAAAGAATCGAAAGAGGACC</canonical>
            <polymorphic>TGATTGCCTTTATTTTTTTTACAAATTTTATTAAATTTAATTGAAGAAGACGCAAGTTTCAGTGAATTTAGAATTTCAGCCGCCGTTCGTACGCTTTTAGGCCATCTCTCTTGATATGTTTAAAATTATCGGCATTTTTGCCCGACTTTTTTAGATTAATATAGATTAATTTCCCATATCCCTAATTTTCGATATTTCCAATTTCACTGACGACCTTCGGAAAACTCAAGAACTTCCGATTGCTTATATGACCAATAAACGTCATTATTTGAACATTTGATCGTCCCGAACAGACTCTTGACATCTTCTAACCAATTCAAATCTTGTCTGGTTTAATCTTTCAATTGCCAATTCTTTGAAATTCTTTACAAGTACCTAGGAATCCTAAGCATCCAGTAAACTAGGAGATACCTAATCGTATCACTTCAAAAAAAACCATGTTAGCCTGAAAGACTACGCCCCTTTCCTATCTTCCGCCCAGTCTTTTTTGTTACATTTGYCATCTGAAGAATGTTTTGAATGCTATCAATTTAATTAGTTTACCAAACGCTTACCACAATTACTATACATTTCTACTTGTTTTCTCCTTTTTCCACCTCTATTCTTCTCTTTTTACTTCACTTTGCCATTAAATTCGCCCTCCTTTTTTTTGTGAGTTATTGGATTTCTTTTGGACTTTTGAATAAATTGGGTGGCTTGTTACAATTGGAATTATCAAGCCTAACGGAAATAATTTGTTTAGTCTGAAACTGTAGGGAATGTAAACTCGAAATGGCTCATTTAGAACAGTTATTGCTCATAACCCGATTATTTTAAATTTAAATTAGCAACACCATTTCTGTATTTTCTATTCTCCATCCAGTTCCAATGGATCATCCATCCTGCCATCCCTTTGAGTGAGAGAACAGATTTAAGTACACACGCGCACATAATAGATACGGAGAAGAATACAAATGACAAGTGTCTGACGAACACAGTGATAAAGAATCGAAAGAGGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGCATCCAGTAAACTAGGAGA</pcr_primer_p1>
		<pcr_primer_p2>AATTTAATGGCAAAGTGAAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAGCATCCAGTAAACTAGGAGATACCTAATCGTATCACTTCAAAAAAAACCATGTTAGCCTGAAAGACTACGCCCCTTTCCTATCTTCCGCCCAGTCTTTTTTGTTACATTTGCCATCTGAAGAATGTTTTGAATGCTATCAATTTAATTAGTTTACCAAACGCTTACCACAATTACTATACATTTCTACTTGTTTTCTCCTTTTTCCACCTCTATTCTTCTCTTTTTACTTCACTTTGCCATTAAATT</canonical_amplicon>
		<polymorphic_amplicon>TAAGCATCCAGTAAACTAGGAGATACCTAATCGTATCACTTCAAAAAAAACCATGTTAGCCTGAAAGACTACGCCCCTTTCCTATCTTCCGCCCAGTCTTTTTTGTTACATTTGYCATCTGAAGAATGTTTTGAATGCTATCAATTTAATTAGTTTACCAAACGCTTACCACAATTACTATACATTTCTACTTGTTTTCTCCTTTTTCCACCTCTATTCTTCTCTTTTTACTTCACTTTGCCATTAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11596</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>47509</contig_pos>
        <strand>+</strand>
        <context>TTTTACCTTT[C/T]TTTTGTGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTCCCACTCTTCTGCAGTTTTCTATACAATGTTTCTTTTTTTACCTTT</left_flank>
        <right_flank>TTTTGTGAAATATTTTGAAATATAAAGAAAAAGGAAAAATTTCGAGCTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGGTGATAAACTTGATTATGTCAGAGGAAGAGAATGGAAACATTCTTATTCGGCAGATTTGTGGCAACAAACCTTTTTCCAGTTTCCTGTTTTGAATGATTGGATTGGACAGAGAAAAAAAGATGAGTAATGGGTTAAAACTTAGGACTTTTGGAAAGCTGGTTTCCAGAACATTCTGGATGATTTTCCCTGATTCTTGCCCCCTGTTCGTCACTTTCCAAGATGAAAATTCAACGAATAGACTTCCAACTTCCGGAATCCGGGTTAAAACCACCGGGGACCACCCAGTTTTACAACCCAAAATCCTCAAAAAACGTCTTCCTCTAAATTAAGTCTCTATTTTTCTCAAATTTACCGCAATGGCCTTGATGAAGTCCCCAAGTTTGGGAGGTCGGTTAATCCTCCCATCCTAAAATCGAGACCAATTATTTTTACTCTTCCTACGTCTTCTCCCACTCTTCTGCAGTTTTCTATACAATGTTTCTTTTTTTACCTTTTTTTTGTGAAATATTTTGAAATATAAAGAAAAAGGAAAAATTTCGAGCTAATTATTTAAAAAATCATTCAATAGTCGGTTCTGAAGAATTTCTTGGAGAATAGGATCTTTGAAAATCCTTCTTATATGTCAATAGTAGATTTTCTAGATAACCCGAATATAAAATTCTGAAAAAATAGGTTTTAATGTTTTCCAAATTATCTGATAATACGTTTTGAATGAATCTAGACCACACATACCGTATTTCTTCTAATGGAAGCCCATCCAAACCTTCAACTTTGAGTTCAATTATCTCAATTCCTGTAAAAGTAATCAAAGTTTTTCCAACTGATGAAATGTTGGGCATAGTATAGTAAAGCTTTTTCCAATTGACAACTTGTCGATATCATTTGTAGAAACCAAGAAAAATTTGCTCAAAGTTGAACAATAAGGGACCCTTCTATTACAGGTTTAACGGTGTTTAACGAATCTCGAAACCCTTTCCGATCAGAGATAAAGATAC</canonical>
            <polymorphic>ATGGGTGATAAACTTGATTATGTCAGAGGAAGAGAATGGAAACATTCTTATTCGGCAGATTTGTGGCAACAAACCTTTTTCCAGTTTCCTGTTTTGAATGATTGGATTGGACAGAGAAAAAAAGATGAGTAATGGGTTAAAACTTAGGACTTTTGGAAAGCTGGTTTCCAGAACATTCTGGATGATTTTCCCTGATTCTTGCCCCCTGTTCGTCACTTTCCAAGATGAAAATTCAACGAATAGACTTCCAACTTCCGGAATCCGGGTTAAAACCACCGGGGACCACCCAGTTTTACAACCCAAAATCCTCAAAAAACGTCTTCCTCTAAATTAAGTCTCTATTTTTCTCAAATTTACCGCAATGGCCTTGATGAAGTCCCCAAGTTTGGGAGGTCGGTTAATCCTCCCATCCTAAAATCGAGACCAATTATTTTTACTCTTCCTACGTCTTCTCCCACTCTTCTGCAGTTTTCTATACAATGTTTCTTTTTTTACCTTTYTTTTGTGAAATATTTTGAAATATAAAGAAAAAGGAAAAATTTCGAGCTAATTATTTAAAAAATCATTCAATAGTCGGTTCTGAAGAATTTCTTGGAGAATAGGATCTTTGAAAATCCTTCTTATATGTCAATAGTAGATTTTCTAGATAACCCGAATATAAAATTCTGAAAAAATAGGTTTTAATGTTTTCCAAATTATCTGATAATACGTTTTGAATGAATCTAGACCACACATACCGTATTTCTTCTAATGGAAGCCCATCCAAACCTTCAACTTTGAGTTCAATTATCTCAATTCCTGTAAAAGTAATCAAAGTTTTTCCAACTGATGAAATGTTGGGCATAGTATAGTAAAGCTTTTTCCAATTGACAACTTGTCGATATCATTTGTAGAAACCAAGAAAAATTTGCTCAAAGTTGAACAATAAGGGACCCTTCTATTACAGGTTTAACGGTGTTTAACGAATCTCGAAACCCTTTCCGATCAGAGATAAAGATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCTAAAATCGAGACCAATTAT</pcr_primer_p1>
		<pcr_primer_p2>ATTCGGGTTATCTAGAAAATCTAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCCTAAAATCGAGACCAATTATTTTTACTCTTCCTACGTCTTCTCCCACTCTTCTGCAGTTTTCTATACAATGTTTCTTTTTTTACCTTTTTTTTGTGAAATATTTTGAAATATAAAGAAAAAGGAAAAATTTCGAGCTAATTATTTAAAAAATCATTCAATAGTCGGTTCTGAAGAATTTCTTGGAGAATAGGATCTTTGAAAATCCTTCTTATATGTCAATAGTAGATTTTCTAGATAACCCGAAT</canonical_amplicon>
		<polymorphic_amplicon>ATCCTAAAATCGAGACCAATTATTTTTACTCTTCCTACGTCTTCTCCCACTCTTCTGCAGTTTTCTATACAATGTTTCTTTTTTTACCTTTYTTTTGTGAAATATTTTGAAATATAAAGAAAAAGGAAAAATTTCGAGCTAATTATTTAAAAAATCATTCAATAGTCGGTTCTGAAGAATTTCTTGGAGAATAGGATCTTTGAAAATCCTTCTTATATGTCAATAGTAGATTTTCTAGATAACCCGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11597</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>47548</contig_pos>
        <strand>+</strand>
        <context>AAAAGGAAAA[A/C]TTTCGAGCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTTACCTTTTTTTTGTGAAATATTTTGAAATATAAAGAAAAAGGAAAA</left_flank>
        <right_flank>TTTCGAGCTAATTATTTAAAAAATCATTCAATAGTCGGTTCTGAAGAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACATTCTTATTCGGCAGATTTGTGGCAACAAACCTTTTTCCAGTTTCCTGTTTTGAATGATTGGATTGGACAGAGAAAAAAAGATGAGTAATGGGTTAAAACTTAGGACTTTTGGAAAGCTGGTTTCCAGAACATTCTGGATGATTTTCCCTGATTCTTGCCCCCTGTTCGTCACTTTCCAAGATGAAAATTCAACGAATAGACTTCCAACTTCCGGAATCCGGGTTAAAACCACCGGGGACCACCCAGTTTTACAACCCAAAATCCTCAAAAAACGTCTTCCTCTAAATTAAGTCTCTATTTTTCTCAAATTTACCGCAATGGCCTTGATGAAGTCCCCAAGTTTGGGAGGTCGGTTAATCCTCCCATCCTAAAATCGAGACCAATTATTTTTACTCTTCCTACGTCTTCTCCCACTCTTCTGCAGTTTTCTATACAATGTTTCTTTTTTTACCTTTTTTTTGTGAAATATTTTGAAATATAAAGAAAAAGGAAAAATTTCGAGCTAATTATTTAAAAAATCATTCAATAGTCGGTTCTGAAGAATTTCTTGGAGAATAGGATCTTTGAAAATCCTTCTTATATGTCAATAGTAGATTTTCTAGATAACCCGAATATAAAATTCTGAAAAAATAGGTTTTAATGTTTTCCAAATTATCTGATAATACGTTTTGAATGAATCTAGACCACACATACCGTATTTCTTCTAATGGAAGCCCATCCAAACCTTCAACTTTGAGTTCAATTATCTCAATTCCTGTAAAAGTAATCAAAGTTTTTCCAACTGATGAAATGTTGGGCATAGTATAGTAAAGCTTTTTCCAATTGACAACTTGTCGATATCATTTGTAGAAACCAAGAAAAATTTGCTCAAAGTTGAACAATAAGGGACCCTTCTATTACAGGTTTAACGGTGTTTAACGAATCTCGAAACCCTTTCCGATCAGAGATAAAGATACAAATGTTGAACTTCTAAAAGTTCGCCACTACGTAACGTC</canonical>
            <polymorphic>AAACATTCTTATTCGGCAGATTTGTGGCAACAAACCTTTTTCCAGTTTCCTGTTTTGAATGATTGGATTGGACAGAGAAAAAAAGATGAGTAATGGGTTAAAACTTAGGACTTTTGGAAAGCTGGTTTCCAGAACATTCTGGATGATTTTCCCTGATTCTTGCCCCCTGTTCGTCACTTTCCAAGATGAAAATTCAACGAATAGACTTCCAACTTCCGGAATCCGGGTTAAAACCACCGGGGACCACCCAGTTTTACAACCCAAAATCCTCAAAAAACGTCTTCCTCTAAATTAAGTCTCTATTTTTCTCAAATTTACCGCAATGGCCTTGATGAAGTCCCCAAGTTTGGGAGGTCGGTTAATCCTCCCATCCTAAAATCGAGACCAATTATTTTTACTCTTCCTACGTCTTCTCCCACTCTTCTGCAGTTTTCTATACAATGTTTCTTTTTTTACCTTTTTTTTGTGAAATATTTTGAAATATAAAGAAAAAGGAAAAMTTTCGAGCTAATTATTTAAAAAATCATTCAATAGTCGGTTCTGAAGAATTTCTTGGAGAATAGGATCTTTGAAAATCCTTCTTATATGTCAATAGTAGATTTTCTAGATAACCCGAATATAAAATTCTGAAAAAATAGGTTTTAATGTTTTCCAAATTATCTGATAATACGTTTTGAATGAATCTAGACCACACATACCGTATTTCTTCTAATGGAAGCCCATCCAAACCTTCAACTTTGAGTTCAATTATCTCAATTCCTGTAAAAGTAATCAAAGTTTTTCCAACTGATGAAATGTTGGGCATAGTATAGTAAAGCTTTTTCCAATTGACAACTTGTCGATATCATTTGTAGAAACCAAGAAAAATTTGCTCAAAGTTGAACAATAAGGGACCCTTCTATTACAGGTTTAACGGTGTTTAACGAATCTCGAAACCCTTTCCGATCAGAGATAAAGATACAAATGTTGAACTTCTAAAAGTTCGCCACTACGTAACGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>243 190 187 135 121 76 48</canonical_bands>
                <polymorphic_bands>243 235 190 135 121 76</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>190 135 112 99 91 76 75 71 40 37 32 22 11 9</canonical_bands>
                <polymorphic_bands>190 135 123 99 91 76 75 71 40 37 32 22 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCTAAAATCGAGACCAATTAT</pcr_primer_p1>
		<pcr_primer_p2>ATTCGGGTTATCTAGAAAATCTAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCCTAAAATCGAGACCAATTATTTTTACTCTTCCTACGTCTTCTCCCACTCTTCTGCAGTTTTCTATACAATGTTTCTTTTTTTACCTTTTTTTTGTGAAATATTTTGAAATATAAAGAAAAAGGAAAAATTTCGAGCTAATTATTTAAAAAATCATTCAATAGTCGGTTCTGAAGAATTTCTTGGAGAATAGGATCTTTGAAAATCCTTCTTATATGTCAATAGTAGATTTTCTAGATAACCCGAAT</canonical_amplicon>
		<polymorphic_amplicon>ATCCTAAAATCGAGACCAATTATTTTTACTCTTCCTACGTCTTCTCCCACTCTTCTGCAGTTTTCTATACAATGTTTCTTTTTTTACCTTTTTTTTGTGAAATATTTTGAAATATAAAGAAAAAGGAAAAMTTTCGAGCTAATTATTTAAAAAATCATTCAATAGTCGGTTCTGAAGAATTTCTTGGAGAATAGGATCTTTGAAAATCCTTCTTATATGTCAATAGTAGATTTTCTAGATAACCCGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11598</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>47681</contig_pos>
        <strand>+</strand>
        <context>AATTCTGAAA[A/T]AATAGGTYTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATATGTCAATAGTAGATTTTCTAGATAACCCGAATATAAAATTCTGAAA</left_flank>
        <right_flank>AATAGGTTTTAATGTTTTCCAAATTATCTGATAATACGTTTTGAATGAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATTCTGGATGATTTTCCCTGATTCTTGCCCCCTGTTCGTCACTTTCCAAGATGAAAATTCAACGAATAGACTTCCAACTTCCGGAATCCGGGTTAAAACCACCGGGGACCACCCAGTTTTACAACCCAAAATCCTCAAAAAACGTCTTCCTCTAAATTAAGTCTCTATTTTTCTCAAATTTACCGCAATGGCCTTGATGAAGTCCCCAAGTTTGGGAGGTCGGTTAATCCTCCCATCCTAAAATCGAGACCAATTATTTTTACTCTTCCTACGTCTTCTCCCACTCTTCTGCAGTTTTCTATACAATGTTTCTTTTTTTACCTTTTTTTTGTGAAATATTTTGAAATATAAAGAAAAAGGAAAAATTTCGAGCTAATTATTTAAAAAATCATTCAATAGTCGGTTCTGAAGAATTTCTTGGAGAATAGGATCTTTGAAAATCCTTCTTATATGTCAATAGTAGATTTTCTAGATAACCCGAATATAAAATTCTGAAAAAATAGGTTTTAATGTTTTCCAAATTATCTGATAATACGTTTTGAATGAATCTAGACCACACATACCGTATTTCTTCTAATGGAAGCCCATCCAAACCTTCAACTTTGAGTTCAATTATCTCAATTCCTGTAAAAGTAATCAAAGTTTTTCCAACTGATGAAATGTTGGGCATAGTATAGTAAAGCTTTTTCCAATTGACAACTTGTCGATATCATTTGTAGAAACCAAGAAAAATTTGCTCAAAGTTGAACAATAAGGGACCCTTCTATTACAGGTTTAACGGTGTTTAACGAATCTCGAAACCCTTTCCGATCAGAGATAAAGATACAAATGTTGAACTTCTAAAAGTTCGCCACTACGTAACGTCTCCTTCTTCTTCTCTTCTTGTCTCTTCCGAATTCCATCAACGGTATCCTCGCCGCACTTTTTATCAAATCCTATTGCCTCCCATACTACTGAATTTATTCTCTTTTCACGTCTTCTTCATTTCGGAAACTTTT</canonical>
            <polymorphic>ACATTCTGGATGATTTTCCCTGATTCTTGCCCCCTGTTCGTCACTTTCCAAGATGAAAATTCAACGAATAGACTTCCAACTTCCGGAATCCGGGTTAAAACCACCGGGGACCACCCAGTTTTACAACCCAAAATCCTCAAAAAACGTCTTCCTCTAAATTAAGTCTCTATTTTTCTCAAATTTACCGCAATGGCCTTGATGAAGTCCCCAAGTTTGGGAGGTCGGTTAATCCTCCCATCCTAAAATCGAGACCAATTATTTTTACTCTTCCTACGTCTTCTCCCACTCTTCTGCAGTTTTCTATACAATGTTTCTTTTTTTACCTTTTTTTTGTGAAATATTTTGAAATATAAAGAAAAAGGAAAAATTTCGAGCTAATTATTTAAAAAATCATTCAATAGTCGGTTCTGAAGAATTTCTTGGAGAATAGGATCTTTGAAAATCCTTCTTATATGTCAATAGTAGATTTTCTAGATAACCCGAATATAAAATTCTGAAAWAATAGGTTTTAATGTTTTCCAAATTATCTGATAATACGTTTTGAATGAATCTAGACCACACATACCGTATTTCTTCTAATGGAAGCCCATCCAAACCTTCAACTTTGAGTTCAATTATCTCAATTCCTGTAAAAGTAATCAAAGTTTTTCCAACTGATGAAATGTTGGGCATAGTATAGTAAAGCTTTTTCCAATTGACAACTTGTCGATATCATTTGTAGAAACCAAGAAAAATTTGCTCAAAGTTGAACAATAAGGGACCCTTCTATTACAGGTTTAACGGTGTTTAACGAATCTCGAAACCCTTTCCGATCAGAGATAAAGATACAAATGTTGAACTTCTAAAAGTTCGCCACTACGTAACGTCTCCTTCTTCTTCTCTTCTTGTCTCTTCCGAATTCCATCAACGGTATCCTCGCCGCACTTTTTATCAAATCCTATTGCCTCCCATACTACTGAATTTATTCTCTTTTCACGTCTTCTTCATTTCGGAAACTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAAAATCCTTCTTATATGTCAA</pcr_primer_p1>
		<pcr_primer_p2>TCAACATTTGTATCTTTATCTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>402</pcr_amplicon_size>
		<canonical_amplicon>TTGAAAATCCTTCTTATATGTCAATAGTAGATTTTCTAGATAACCCGAATATAAAATTCTGAAAAAATAGGTTTTAATGTTTTCCAAATTATCTGATAATACGTTTTGAATGAATCTAGACCACACATACCGTATTTCTTCTAATGGAAGCCCATCCAAACCTTCAACTTTGAGTTCAATTATCTCAATTCCTGTAAAAGTAATCAAAGTTTTTCCAACTGATGAAATGTTGGGCATAGTATAGTAAAGCTTTTTCCAATTGACAACTTGTCGATATCATTTGTAGAAACCAAGAAAAATTTGCTCAAAGTTGAACAATAAGGGACCCTTCTATTACAGGTTTAACGGTGTTTAACGAATCTCGAAACCCTTTCCGATCAGAGATAAAGATACAAATGTTGA</canonical_amplicon>
		<polymorphic_amplicon>TTGAAAATCCTTCTTATATGTCAATAGTAGATTTTCTAGATAACCCGAATATAAAATTCTGAAAWAATAGGTTTTAATGTTTTCCAAATTATCTGATAATACGTTTTGAATGAATCTAGACCACACATACCGTATTTCTTCTAATGGAAGCCCATCCAAACCTTCAACTTTGAGTTCAATTATCTCAATTCCTGTAAAAGTAATCAAAGTTTTTCCAACTGATGAAATGTTGGGCATAGTATAGTAAAGCTTTTTCCAATTGACAACTTGTCGATATCATTTGTAGAAACCAAGAAAAATTTGCTCAAAGTTGAACAATAAGGGACCCTTCTATTACAGGTTTAACGGTGTTTAACGAATCTCGAAACCCTTTCCGATCAGAGATAAAGATACAAATGTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11599</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>47689</contig_pos>
        <strand>+</strand>
        <context>AAWAATAGGT[C/T]TTAATGTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATAGTAGATTTTCTAGATAACCCGAATATAAAATTCTGAAAAAATAGGT</left_flank>
        <right_flank>TTAATGTTTTCCAAATTATCTGATAATACGTTTTGAATGAATCTAGACCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGATTTTCCCTGATTCTTGCCCCCTGTTCGTCACTTTCCAAGATGAAAATTCAACGAATAGACTTCCAACTTCCGGAATCCGGGTTAAAACCACCGGGGACCACCCAGTTTTACAACCCAAAATCCTCAAAAAACGTCTTCCTCTAAATTAAGTCTCTATTTTTCTCAAATTTACCGCAATGGCCTTGATGAAGTCCCCAAGTTTGGGAGGTCGGTTAATCCTCCCATCCTAAAATCGAGACCAATTATTTTTACTCTTCCTACGTCTTCTCCCACTCTTCTGCAGTTTTCTATACAATGTTTCTTTTTTTACCTTTTTTTTGTGAAATATTTTGAAATATAAAGAAAAAGGAAAAATTTCGAGCTAATTATTTAAAAAATCATTCAATAGTCGGTTCTGAAGAATTTCTTGGAGAATAGGATCTTTGAAAATCCTTCTTATATGTCAATAGTAGATTTTCTAGATAACCCGAATATAAAATTCTGAAAAAATAGGTTTTAATGTTTTCCAAATTATCTGATAATACGTTTTGAATGAATCTAGACCACACATACCGTATTTCTTCTAATGGAAGCCCATCCAAACCTTCAACTTTGAGTTCAATTATCTCAATTCCTGTAAAAGTAATCAAAGTTTTTCCAACTGATGAAATGTTGGGCATAGTATAGTAAAGCTTTTTCCAATTGACAACTTGTCGATATCATTTGTAGAAACCAAGAAAAATTTGCTCAAAGTTGAACAATAAGGGACCCTTCTATTACAGGTTTAACGGTGTTTAACGAATCTCGAAACCCTTTCCGATCAGAGATAAAGATACAAATGTTGAACTTCTAAAAGTTCGCCACTACGTAACGTCTCCTTCTTCTTCTCTTCTTGTCTCTTCCGAATTCCATCAACGGTATCCTCGCCGCACTTTTTATCAAATCCTATTGCCTCCCATACTACTGAATTTATTCTCTTTTCACGTCTTCTTCATTTCGGAAACTTTTTCTGTAGA</canonical>
            <polymorphic>GATGATTTTCCCTGATTCTTGCCCCCTGTTCGTCACTTTCCAAGATGAAAATTCAACGAATAGACTTCCAACTTCCGGAATCCGGGTTAAAACCACCGGGGACCACCCAGTTTTACAACCCAAAATCCTCAAAAAACGTCTTCCTCTAAATTAAGTCTCTATTTTTCTCAAATTTACCGCAATGGCCTTGATGAAGTCCCCAAGTTTGGGAGGTCGGTTAATCCTCCCATCCTAAAATCGAGACCAATTATTTTTACTCTTCCTACGTCTTCTCCCACTCTTCTGCAGTTTTCTATACAATGTTTCTTTTTTTACCTTTTTTTTGTGAAATATTTTGAAATATAAAGAAAAAGGAAAAATTTCGAGCTAATTATTTAAAAAATCATTCAATAGTCGGTTCTGAAGAATTTCTTGGAGAATAGGATCTTTGAAAATCCTTCTTATATGTCAATAGTAGATTTTCTAGATAACCCGAATATAAAATTCTGAAAAAATAGGTYTTAATGTTTTCCAAATTATCTGATAATACGTTTTGAATGAATCTAGACCACACATACCGTATTTCTTCTAATGGAAGCCCATCCAAACCTTCAACTTTGAGTTCAATTATCTCAATTCCTGTAAAAGTAATCAAAGTTTTTCCAACTGATGAAATGTTGGGCATAGTATAGTAAAGCTTTTTCCAATTGACAACTTGTCGATATCATTTGTAGAAACCAAGAAAAATTTGCTCAAAGTTGAACAATAAGGGACCCTTCTATTACAGGTTTAACGGTGTTTAACGAATCTCGAAACCCTTTCCGATCAGAGATAAAGATACAAATGTTGAACTTCTAAAAGTTCGCCACTACGTAACGTCTCCTTCTTCTTCTCTTCTTGTCTCTTCCGAATTCCATCAACGGTATCCTCGCCGCACTTTTTATCAAATCCTATTGCCTCCCATACTACTGAATTTATTCTCTTTTCACGTCTTCTTCATTTCGGAAACTTTTTCTGTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAAAATCCTTCTTATATGTCAA</pcr_primer_p1>
		<pcr_primer_p2>TCAACATTTGTATCTTTATCTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>402</pcr_amplicon_size>
		<canonical_amplicon>TTGAAAATCCTTCTTATATGTCAATAGTAGATTTTCTAGATAACCCGAATATAAAATTCTGAAAAAATAGGTTTTAATGTTTTCCAAATTATCTGATAATACGTTTTGAATGAATCTAGACCACACATACCGTATTTCTTCTAATGGAAGCCCATCCAAACCTTCAACTTTGAGTTCAATTATCTCAATTCCTGTAAAAGTAATCAAAGTTTTTCCAACTGATGAAATGTTGGGCATAGTATAGTAAAGCTTTTTCCAATTGACAACTTGTCGATATCATTTGTAGAAACCAAGAAAAATTTGCTCAAAGTTGAACAATAAGGGACCCTTCTATTACAGGTTTAACGGTGTTTAACGAATCTCGAAACCCTTTCCGATCAGAGATAAAGATACAAATGTTGA</canonical_amplicon>
		<polymorphic_amplicon>TTGAAAATCCTTCTTATATGTCAATAGTAGATTTTCTAGATAACCCGAATATAAAATTCTGAAAAAATAGGTYTTAATGTTTTCCAAATTATCTGATAATACGTTTTGAATGAATCTAGACCACACATACCGTATTTCTTCTAATGGAAGCCCATCCAAACCTTCAACTTTGAGTTCAATTATCTCAATTCCTGTAAAAGTAATCAAAGTTTTTCCAACTGATGAAATGTTGGGCATAGTATAGTAAAGCTTTTTCCAATTGACAACTTGTCGATATCATTTGTAGAAACCAAGAAAAATTTGCTCAAAGTTGAACAATAAGGGACCCTTCTATTACAGGTTTAACGGTGTTTAACGAATCTCGAAACCCTTTCCGATCAGAGATAAAGATACAAATGTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11600</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>47717</contig_pos>
        <strand>+</strand>
        <context>ATCTGATAAT[A/G]CGTTTTGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAAAATTCTGAAAAAATAGGTTTTAATGTTTTCCAAATTATCTGATAAT</left_flank>
        <right_flank>CGTTTTGAATGAATCTAGACCACACATACCGTATTTCTTCTAATGGAAGC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGTCACTTTCCAAGATGAAAATTCAACGAATAGACTTCCAACTTCCGGAATCCGGGTTAAAACCACCGGGGACCACCCAGTTTTACAACCCAAAATCCTCAAAAAACGTCTTCCTCTAAATTAAGTCTCTATTTTTCTCAAATTTACCGCAATGGCCTTGATGAAGTCCCCAAGTTTGGGAGGTCGGTTAATCCTCCCATCCTAAAATCGAGACCAATTATTTTTACTCTTCCTACGTCTTCTCCCACTCTTCTGCAGTTTTCTATACAATGTTTCTTTTTTTACCTTTTTTTTGTGAAATATTTTGAAATATAAAGAAAAAGGAAAAATTTCGAGCTAATTATTTAAAAAATCATTCAATAGTCGGTTCTGAAGAATTTCTTGGAGAATAGGATCTTTGAAAATCCTTCTTATATGTCAATAGTAGATTTTCTAGATAACCCGAATATAAAATTCTGAAAAAATAGGTTTTAATGTTTTCCAAATTATCTGATAATACGTTTTGAATGAATCTAGACCACACATACCGTATTTCTTCTAATGGAAGCCCATCCAAACCTTCAACTTTGAGTTCAATTATCTCAATTCCTGTAAAAGTAATCAAAGTTTTTCCAACTGATGAAATGTTGGGCATAGTATAGTAAAGCTTTTTCCAATTGACAACTTGTCGATATCATTTGTAGAAACCAAGAAAAATTTGCTCAAAGTTGAACAATAAGGGACCCTTCTATTACAGGTTTAACGGTGTTTAACGAATCTCGAAACCCTTTCCGATCAGAGATAAAGATACAAATGTTGAACTTCTAAAAGTTCGCCACTACGTAACGTCTCCTTCTTCTTCTCTTCTTGTCTCTTCCGAATTCCATCAACGGTATCCTCGCCGCACTTTTTATCAAATCCTATTGCCTCCCATACTACTGAATTTATTCTCTTTTCACGTCTTCTTCATTTCGGAAACTTTTTCTGTAGAATATTCTCGCATCTGACTGTCGCTCGCC</canonical>
            <polymorphic>TTCGTCACTTTCCAAGATGAAAATTCAACGAATAGACTTCCAACTTCCGGAATCCGGGTTAAAACCACCGGGGACCACCCAGTTTTACAACCCAAAATCCTCAAAAAACGTCTTCCTCTAAATTAAGTCTCTATTTTTCTCAAATTTACCGCAATGGCCTTGATGAAGTCCCCAAGTTTGGGAGGTCGGTTAATCCTCCCATCCTAAAATCGAGACCAATTATTTTTACTCTTCCTACGTCTTCTCCCACTCTTCTGCAGTTTTCTATACAATGTTTCTTTTTTTACCTTTTTTTTGTGAAATATTTTGAAATATAAAGAAAAAGGAAAAATTTCGAGCTAATTATTTAAAAAATCATTCAATAGTCGGTTCTGAAGAATTTCTTGGAGAATAGGATCTTTGAAAATCCTTCTTATATGTCAATAGTAGATTTTCTAGATAACCCGAATATAAAATTCTGAAAAAATAGGTTTTAATGTTTTCCAAATTATCTGATAATRCGTTTTGAATGAATCTAGACCACACATACCGTATTTCTTCTAATGGAAGCCCATCCAAACCTTCAACTTTGAGTTCAATTATCTCAATTCCTGTAAAAGTAATCAAAGTTTTTCCAACTGATGAAATGTTGGGCATAGTATAGTAAAGCTTTTTCCAATTGACAACTTGTCGATATCATTTGTAGAAACCAAGAAAAATTTGCTCAAAGTTGAACAATAAGGGACCCTTCTATTACAGGTTTAACGGTGTTTAACGAATCTCGAAACCCTTTCCGATCAGAGATAAAGATACAAATGTTGAACTTCTAAAAGTTCGCCACTACGTAACGTCTCCTTCTTCTTCTCTTCTTGTCTCTTCCGAATTCCATCAACGGTATCCTCGCCGCACTTTTTATCAAATCCTATTGCCTCCCATACTACTGAATTTATTCTCTTTTCACGTCTTCTTCATTTCGGAAACTTTTTCTGTAGAATATTCTCGCATCTGACTGTCGCTCGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>322 263 129 112 108 61 5</canonical_bands>
                <polymorphic_bands>585 129 112 108 61 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACCCGAATATAAAATTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TCAACATTTGTATCTTTATCTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>361</pcr_amplicon_size>
		<canonical_amplicon>AACCCGAATATAAAATTCTGAAAAAATAGGTTTTAATGTTTTCCAAATTATCTGATAATACGTTTTGAATGAATCTAGACCACACATACCGTATTTCTTCTAATGGAAGCCCATCCAAACCTTCAACTTTGAGTTCAATTATCTCAATTCCTGTAAAAGTAATCAAAGTTTTTCCAACTGATGAAATGTTGGGCATAGTATAGTAAAGCTTTTTCCAATTGACAACTTGTCGATATCATTTGTAGAAACCAAGAAAAATTTGCTCAAAGTTGAACAATAAGGGACCCTTCTATTACAGGTTTAACGGTGTTTAACGAATCTCGAAACCCTTTCCGATCAGAGATAAAGATACAAATGTTGA</canonical_amplicon>
		<polymorphic_amplicon>AACCCGAATATAAAATTCTGAAAAAATAGGTTTTAATGTTTTCCAAATTATCTGATAATRCGTTTTGAATGAATCTAGACCACACATACCGTATTTCTTCTAATGGAAGCCCATCCAAACCTTCAACTTTGAGTTCAATTATCTCAATTCCTGTAAAAGTAATCAAAGTTTTTCCAACTGATGAAATGTTGGGCATAGTATAGTAAAGCTTTTTCCAATTGACAACTTGTCGATATCATTTGTAGAAACCAAGAAAAATTTGCTCAAAGTTGAACAATAAGGGACCCTTCTATTACAGGTTTAACGGTGTTTAACGAATCTCGAAACCCTTTCCGATCAGAGATAAAGATACAAATGTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11601</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>47728</contig_pos>
        <strand>+</strand>
        <context>CGTTTTGAAT[A/G]AATCTAGACC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAATAGGTTTTAATGTTTTCCAAATTATCTGATAATACGTTTTGAAT</left_flank>
        <right_flank>AATCTAGACCACACATACCGTATTTCTTCTAATGGAAGCCCATCCAAACC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAGATGAAAATTCAACGAATAGACTTCCAACTTCCGGAATCCGGGTTAAAACCACCGGGGACCACCCAGTTTTACAACCCAAAATCCTCAAAAAACGTCTTCCTCTAAATTAAGTCTCTATTTTTCTCAAATTTACCGCAATGGCCTTGATGAAGTCCCCAAGTTTGGGAGGTCGGTTAATCCTCCCATCCTAAAATCGAGACCAATTATTTTTACTCTTCCTACGTCTTCTCCCACTCTTCTGCAGTTTTCTATACAATGTTTCTTTTTTTACCTTTTTTTTGTGAAATATTTTGAAATATAAAGAAAAAGGAAAAATTTCGAGCTAATTATTTAAAAAATCATTCAATAGTCGGTTCTGAAGAATTTCTTGGAGAATAGGATCTTTGAAAATCCTTCTTATATGTCAATAGTAGATTTTCTAGATAACCCGAATATAAAATTCTGAAAAAATAGGTTTTAATGTTTTCCAAATTATCTGATAATACGTTTTGAATGAATCTAGACCACACATACCGTATTTCTTCTAATGGAAGCCCATCCAAACCTTCAACTTTGAGTTCAATTATCTCAATTCCTGTAAAAGTAATCAAAGTTTTTCCAACTGATGAAATGTTGGGCATAGTATAGTAAAGCTTTTTCCAATTGACAACTTGTCGATATCATTTGTAGAAACCAAGAAAAATTTGCTCAAAGTTGAACAATAAGGGACCCTTCTATTACAGGTTTAACGGTGTTTAACGAATCTCGAAACCCTTTCCGATCAGAGATAAAGATACAAATGTTGAACTTCTAAAAGTTCGCCACTACGTAACGTCTCCTTCTTCTTCTCTTCTTGTCTCTTCCGAATTCCATCAACGGTATCCTCGCCGCACTTTTTATCAAATCCTATTGCCTCCCATACTACTGAATTTATTCTCTTTTCACGTCTTCTTCATTTCGGAAACTTTTTCTGTAGAATATTCTCGCATCTGACTGTCGCTCGCCCGCCCATTTAT</canonical>
            <polymorphic>CCAAGATGAAAATTCAACGAATAGACTTCCAACTTCCGGAATCCGGGTTAAAACCACCGGGGACCACCCAGTTTTACAACCCAAAATCCTCAAAAAACGTCTTCCTCTAAATTAAGTCTCTATTTTTCTCAAATTTACCGCAATGGCCTTGATGAAGTCCCCAAGTTTGGGAGGTCGGTTAATCCTCCCATCCTAAAATCGAGACCAATTATTTTTACTCTTCCTACGTCTTCTCCCACTCTTCTGCAGTTTTCTATACAATGTTTCTTTTTTTACCTTTTTTTTGTGAAATATTTTGAAATATAAAGAAAAAGGAAAAATTTCGAGCTAATTATTTAAAAAATCATTCAATAGTCGGTTCTGAAGAATTTCTTGGAGAATAGGATCTTTGAAAATCCTTCTTATATGTCAATAGTAGATTTTCTAGATAACCCGAATATAAAATTCTGAAAAAATAGGTTTTAATGTTTTCCAAATTATCTGATAATACGTTTTGAATRAATCTAGACCACACATACCGTATTTCTTCTAATGGAAGCCCATCCAAACCTTCAACTTTGAGTTCAATTATCTCAATTCCTGTAAAAGTAATCAAAGTTTTTCCAACTGATGAAATGTTGGGCATAGTATAGTAAAGCTTTTTCCAATTGACAACTTGTCGATATCATTTGTAGAAACCAAGAAAAATTTGCTCAAAGTTGAACAATAAGGGACCCTTCTATTACAGGTTTAACGGTGTTTAACGAATCTCGAAACCCTTTCCGATCAGAGATAAAGATACAAATGTTGAACTTCTAAAAGTTCGCCACTACGTAACGTCTCCTTCTTCTTCTCTTCTTGTCTCTTCCGAATTCCATCAACGGTATCCTCGCCGCACTTTTTATCAAATCCTATTGCCTCCCATACTACTGAATTTATTCTCTTTTCACGTCTTCTTCATTTCGGAAACTTTTTCTGTAGAATATTCTCGCATCTGACTGTCGCTCGCCCGCCCATTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>461 255 245 39</canonical_bands>
                <polymorphic_bands>706 255 39</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>461 255 245 39</canonical_bands>
                <polymorphic_bands>706 255 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACCCGAATATAAAATTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TCAACATTTGTATCTTTATCTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>361</pcr_amplicon_size>
		<canonical_amplicon>AACCCGAATATAAAATTCTGAAAAAATAGGTTTTAATGTTTTCCAAATTATCTGATAATACGTTTTGAATGAATCTAGACCACACATACCGTATTTCTTCTAATGGAAGCCCATCCAAACCTTCAACTTTGAGTTCAATTATCTCAATTCCTGTAAAAGTAATCAAAGTTTTTCCAACTGATGAAATGTTGGGCATAGTATAGTAAAGCTTTTTCCAATTGACAACTTGTCGATATCATTTGTAGAAACCAAGAAAAATTTGCTCAAAGTTGAACAATAAGGGACCCTTCTATTACAGGTTTAACGGTGTTTAACGAATCTCGAAACCCTTTCCGATCAGAGATAAAGATACAAATGTTGA</canonical_amplicon>
		<polymorphic_amplicon>AACCCGAATATAAAATTCTGAAAAAATAGGTTTTAATGTTTTCCAAATTATCTGATAATACGTTTTGAATRAATCTAGACCACACATACCGTATTTCTTCTAATGGAAGCCCATCCAAACCTTCAACTTTGAGTTCAATTATCTCAATTCCTGTAAAAGTAATCAAAGTTTTTCCAACTGATGAAATGTTGGGCATAGTATAGTAAAGCTTTTTCCAATTGACAACTTGTCGATATCATTTGTAGAAACCAAGAAAAATTTGCTCAAAGTTGAACAATAAGGGACCCTTCTATTACAGGTTTAACGGTGTTTAACGAATCTCGAAACCCTTTCCGATCAGAGATAAAGATACAAATGTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11602</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>87011</contig_pos>
        <strand></strand>
        <context>GCGGAGACAT[G/A]GAAACCTAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAAACAAACCACGTCATCGTTTTTTTCTTTTTTCAGGTCCGCGGAGACAT</left_flank>
        <right_flank>GAAACCTAGAAAATAGAGAGAGGAATGAGCCAATATCTCATAAATTTTTA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTTGCAGAACACCGTAGAATATGTTTGTATCCAAGGAAAACCTGTAAAAAAGTGTATCTTAACTTTGAGTCAACTTATCTCAATCCCTGTCAAAGACAGAAAAATGTGCTCAATTGATAAAATTGTTATCGTAATATGACACACATTTTATCAAGGGACCCATTTTTGATATCTTACATAGGAGCCAAGAAAAATTAGGTCAAACTTGATAGTGTGGGAGCCCTTCTAAAGGTAAATACTTCAGTTCGATGCAGATAAATTGTTCATCATAAAAGTTTTTGGTTTAAGATCAGTCAAAAATATTTATAAAAACAAAAGTAATTAGGATATTGAAAAAAGAAGAAATGTTAGGAGTTGCTGAGGAACGAGTAGATCGATGAGGAGGAGGACTTGGAGAAGGAGAAGGTGCAACGTATGGTGGAAGTCGCTCTGGAGGAGGCTTGCTGAAACAAACCACGTCATCGTTTTTTTCTTTTTTCAGGTCCGCGGAGACATGGAAACCTAGAAAATAGAGAGAGGAATGAGCCAATATCTCATAAATTTTTACCGAAAGAAATTAGAGCGATGAGCAAAACTAGTAGAGTGTTCATTGAACTACGGTAGTCTTTGTGGTGAAAGAAAGCCAAAAAAAATCGGGGAAAAAACGAGGCCAGAACATCATAAGAATGGGTTTAATTAGGAGGAAAACTTAAAAAAAAGGTCACGCCACAGTTTTTTTTTCGAAAGTGTAAAGTTCTATGAGTTCATACCGTCCCTACAAATCTGAGTTTTTCTTTGAAGGTTTTCTTGGCTGGCATCATTTAACCATCGTTGTATACGGTAGGAAAAACTGTAAAACTTTCTGAATATGTGGTTTAATTAGAGATTTCTGTGTTGCCAATCTGTGTGAAAACAACGCTCTATTTTTCAATGTCATGGCCTAATTTGTCTAGGTCACTTCTTATTTATGCAAATTACAGTTCAAATTCAGCTGTTCCTACTGTGGTTATCAGTTTT</canonical>
            <polymorphic>ATTTTTTGCAGAACACCGTAGAATATGTTTGTATCCAAGGAAAACCTGTAAAAAAGTGTATCTTAACTTTGAGTCAACTTATCTCAATCCCTGTCAAAGACAGAAAAATGTGCTCAATTGATAAAATTGTTATCGTAATATGACACACATTTTATCAAGGGACCCATTTTTGATATCTTACATAGGAGCCAAGAAAAATTAGGTCAAACTTGATAGTGTGGGAGCCCTTCTAAAGGTAAATACTTCAGTTCGATGCAGATAAATTGTTCATCATAAAAGTTTTTGGTTTAAGATCAGTCAAAAATATTTATAAAAACAAAAGTAATTAGGATATTGAAAAAAGAAGAAATGTTAGGAGTTGCTGAGGAACGAGTAGATCGATGAGGAGGAGGACTTGGAGAAGGAGAAGGTGCAACGTATGGTGGAAGTCGCTCTGGAGGAGGCTTGCTGAAACAAACCACGTCATCGTTTTTTTCTTTTTTCAGGTCCGCGGAGACATRGAAACCTAGAAAATAGAGAGAGGAATGAGCCAATATCTCATAAATTTTTACCGAAAGAAATTAGAGCGATGAGCAAAACTAGTAGAGTGTTCATTGAACTACGGTAGTCTTTGTGGTGAAAGAAAGCCAAAAAAAATCGGGGAAAAAACGAGGCCAGAACATCATAAGAATGGGTTTAATTAGGAGGAAAACTTAAAAAAAAGGTCACGCCACAGTTTTTTTTTCGAAAGTGTAAAGTTCTATGAGTTCATACCGTCCCTACAAATCTGAGTTTTTCTTTGAAGGTTTTCTTGGCTGGCATCATTTAACCATCGTTGTATACGGTAGGAAAAACTGTAAAACTTTCTGAATATGTGGTTTAATTAGAGATTTCTGTGTTGCCAATCTGTGTGAAAACAACGCTCTATTTTTCAATGTCATGGCCTAATTTGTCTAGGTCACTTCTTATTTATGCAAATTACAGTTCAAATTCAGCTGTTCCTACTGTGGTTATCAGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>497 421 82</canonical_bands>
                <polymorphic_bands>918 82</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGAAGAAATGTTAGGAGTTG</pcr_primer_p1>
		<pcr_primer_p2>TACTAGTTTTGCTCATCGCTCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGAAGAAATGTTAGGAGTTGCTGAGGAACGAGTAGATCGATGAGGAGGAGGACTTGGAGAAGGAGAAGGTGCAACGTATGGTGGAAGTCGCTCTGGAGGAGGCTTGCTGAAACAAACCACGTCATCGTTTTTTTCTTTTTTCAGGTCCGCGGAGACATGGAAACCTAGAAAATAGAGAGAGGAATGAGCCAATATCTCATAAATTTTTACCGAAAGAAATTAGAGCGATGAGCAAAACTAGTA</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGAAGAAATGTTAGGAGTTGCTGAGGAACGAGTAGATCGATGAGGAGGAGGACTTGGAGAAGGAGAAGGTGCAACGTATGGTGGAAGTCGCTCTGGAGGAGGCTTGCTGAAACAAACCACGTCATCGTTTTTTTCTTTTTTCAGGTCCGCGGAGACATRGAAACCTAGAAAATAGAGAGAGGAATGAGCCAATATCTCATAAATTTTTACCGAAAGAAATTAGAGCGATGAGCAAAACTAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11603</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>87061</contig_pos>
        <strand></strand>
        <context>ATAAATTTTT[A/T]CCGAAAGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAAACCTAGAAAATAGAGAGAGGAATGAGCCAATATCTCATAAATTTTT</left_flank>
        <right_flank>CCGAAAGAAATTAGAGCGATGAGCAAAACTAGTAGAGTGTTCATTGAACT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAGTGTATCTTAACTTTGAGTCAACTTATCTCAATCCCTGTCAAAGACAGAAAAATGTGCTCAATTGATAAAATTGTTATCGTAATATGACACACATTTTATCAAGGGACCCATTTTTGATATCTTACATAGGAGCCAAGAAAAATTAGGTCAAACTTGATAGTGTGGGAGCCCTTCTAAAGGTAAATACTTCAGTTCGATGCAGATAAATTGTTCATCATAAAAGTTTTTGGTTTAAGATCAGTCAAAAATATTTATAAAAACAAAAGTAATTAGGATATTGAAAAAAGAAGAAATGTTAGGAGTTGCTGAGGAACGAGTAGATCGATGAGGAGGAGGACTTGGAGAAGGAGAAGGTGCAACGTATGGTGGAAGTCGCTCTGGAGGAGGCTTGCTGAAACAAACCACGTCATCGTTTTTTTCTTTTTTCAGGTCCGCGGAGACATGGAAACCTAGAAAATAGAGAGAGGAATGAGCCAATATCTCATAAATTTTTACCGAAAGAAATTAGAGCGATGAGCAAAACTAGTAGAGTGTTCATTGAACTACGGTAGTCTTTGTGGTGAAAGAAAGCCAAAAAAAATCGGGGAAAAAACGAGGCCAGAACATCATAAGAATGGGTTTAATTAGGAGGAAAACTTAAAAAAAAGGTCACGCCACAGTTTTTTTTTCGAAAGTGTAAAGTTCTATGAGTTCATACCGTCCCTACAAATCTGAGTTTTTCTTTGAAGGTTTTCTTGGCTGGCATCATTTAACCATCGTTGTATACGGTAGGAAAAACTGTAAAACTTTCTGAATATGTGGTTTAATTAGAGATTTCTGTGTTGCCAATCTGTGTGAAAACAACGCTCTATTTTTCAATGTCATGGCCTAATTTGTCTAGGTCACTTCTTATTTATGCAAATTACAGTTCAAATTCAGCTGTTCCTACTGTGGTTATCAGTTTTTATTCAATTTATTATGAACACTTCTTCGGGATTTAGAACATTGCATTCGA</canonical>
            <polymorphic>AAAAAGTGTATCTTAACTTTGAGTCAACTTATCTCAATCCCTGTCAAAGACAGAAAAATGTGCTCAATTGATAAAATTGTTATCGTAATATGACACACATTTTATCAAGGGACCCATTTTTGATATCTTACATAGGAGCCAAGAAAAATTAGGTCAAACTTGATAGTGTGGGAGCCCTTCTAAAGGTAAATACTTCAGTTCGATGCAGATAAATTGTTCATCATAAAAGTTTTTGGTTTAAGATCAGTCAAAAATATTTATAAAAACAAAAGTAATTAGGATATTGAAAAAAGAAGAAATGTTAGGAGTTGCTGAGGAACGAGTAGATCGATGAGGAGGAGGACTTGGAGAAGGAGAAGGTGCAACGTATGGTGGAAGTCGCTCTGGAGGAGGCTTGCTGAAACAAACCACGTCATCGTTTTTTTCTTTTTTCAGGTCCGCGGAGACATGGAAACCTAGAAAATAGAGAGAGGAATGAGCCAATATCTCATAAATTTTTWCCGAAAGAAATTAGAGCGATGAGCAAAACTAGTAGAGTGTTCATTGAACTACGGTAGTCTTTGTGGTGAAAGAAAGCCAAAAAAAATCGGGGAAAAAACGAGGCCAGAACATCATAAGAATGGGTTTAATTAGGAGGAAAACTTAAAAAAAAGGTCACGCCACAGTTTTTTTTTCGAAAGTGTAAAGTTCTATGAGTTCATACCGTCCCTACAAATCTGAGTTTTTCTTTGAAGGTTTTCTTGGCTGGCATCATTTAACCATCGTTGTATACGGTAGGAAAAACTGTAAAACTTTCTGAATATGTGGTTTAATTAGAGATTTCTGTGTTGCCAATCTGTGTGAAAACAACGCTCTATTTTTCAATGTCATGGCCTAATTTGTCTAGGTCACTTCTTATTTATGCAAATTACAGTTCAAATTCAGCTGTTCCTACTGTGGTTATCAGTTTTTATTCAATTTATTATGAACACTTCTTCGGGATTTAGAACATTGCATTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGACTTGGAGAAGGAGAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTTCTTTCACCACAAAGACTAC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>AGGACTTGGAGAAGGAGAAGGTGCAACGTATGGTGGAAGTCGCTCTGGAGGAGGCTTGCTGAAACAAACCACGTCATCGTTTTTTTCTTTTTTCAGGTCCGCGGAGACATGGAAACCTAGAAAATAGAGAGAGGAATGAGCCAATATCTCATAAATTTTTACCGAAAGAAATTAGAGCGATGAGCAAAACTAGTAGAGTGTTCATTGAACTACGGTAGTCTTTGTGGTGAAAGAAAG</canonical_amplicon>
		<polymorphic_amplicon>AGGACTTGGAGAAGGAGAAGGTGCAACGTATGGTGGAAGTCGCTCTGGAGGAGGCTTGCTGAAACAAACCACGTCATCGTTTTTTTCTTTTTTCAGGTCCGCGGAGACATGGAAACCTAGAAAATAGAGAGAGGAATGAGCCAATATCTCATAAATTTTTWCCGAAAGAAATTAGAGCGATGAGCAAAACTAGTAGAGTGTTCATTGAACTACGGTAGTCTTTGTGGTGAAAGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11604</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>87073</contig_pos>
        <strand></strand>
        <context>CGAAAGAAAT[T/G]AGAGCGATGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AATAGAGAGAGGAATGAGCCAATATCTCATAAATTTTTACCGAAAGAAAT</left_flank>
        <right_flank>AGAGCGATGAGCAAAACTAGTAGAGTGTTCATTGAACTACGGTAGTCTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAACTTTGAGTCAACTTATCTCAATCCCTGTCAAAGACAGAAAAATGTGCTCAATTGATAAAATTGTTATCGTAATATGACACACATTTTATCAAGGGACCCATTTTTGATATCTTACATAGGAGCCAAGAAAAATTAGGTCAAACTTGATAGTGTGGGAGCCCTTCTAAAGGTAAATACTTCAGTTCGATGCAGATAAATTGTTCATCATAAAAGTTTTTGGTTTAAGATCAGTCAAAAATATTTATAAAAACAAAAGTAATTAGGATATTGAAAAAAGAAGAAATGTTAGGAGTTGCTGAGGAACGAGTAGATCGATGAGGAGGAGGACTTGGAGAAGGAGAAGGTGCAACGTATGGTGGAAGTCGCTCTGGAGGAGGCTTGCTGAAACAAACCACGTCATCGTTTTTTTCTTTTTTCAGGTCCGCGGAGACATGGAAACCTAGAAAATAGAGAGAGGAATGAGCCAATATCTCATAAATTTTTACCGAAAGAAATTAGAGCGATGAGCAAAACTAGTAGAGTGTTCATTGAACTACGGTAGTCTTTGTGGTGAAAGAAAGCCAAAAAAAATCGGGGAAAAAACGAGGCCAGAACATCATAAGAATGGGTTTAATTAGGAGGAAAACTTAAAAAAAAGGTCACGCCACAGTTTTTTTTTCGAAAGTGTAAAGTTCTATGAGTTCATACCGTCCCTACAAATCTGAGTTTTTCTTTGAAGGTTTTCTTGGCTGGCATCATTTAACCATCGTTGTATACGGTAGGAAAAACTGTAAAACTTTCTGAATATGTGGTTTAATTAGAGATTTCTGTGTTGCCAATCTGTGTGAAAACAACGCTCTATTTTTCAATGTCATGGCCTAATTTGTCTAGGTCACTTCTTATTTATGCAAATTACAGTTCAAATTCAGCTGTTCCTACTGTGGTTATCAGTTTTTATTCAATTTATTATGAACACTTCTTCGGGATTTAGAACATTGCATTCGACTACGTTCAAAG</canonical>
            <polymorphic>TTAACTTTGAGTCAACTTATCTCAATCCCTGTCAAAGACAGAAAAATGTGCTCAATTGATAAAATTGTTATCGTAATATGACACACATTTTATCAAGGGACCCATTTTTGATATCTTACATAGGAGCCAAGAAAAATTAGGTCAAACTTGATAGTGTGGGAGCCCTTCTAAAGGTAAATACTTCAGTTCGATGCAGATAAATTGTTCATCATAAAAGTTTTTGGTTTAAGATCAGTCAAAAATATTTATAAAAACAAAAGTAATTAGGATATTGAAAAAAGAAGAAATGTTAGGAGTTGCTGAGGAACGAGTAGATCGATGAGGAGGAGGACTTGGAGAAGGAGAAGGTGCAACGTATGGTGGAAGTCGCTCTGGAGGAGGCTTGCTGAAACAAACCACGTCATCGTTTTTTTCTTTTTTCAGGTCCGCGGAGACATGGAAACCTAGAAAATAGAGAGAGGAATGAGCCAATATCTCATAAATTTTTACCGAAAGAAATKAGAGCGATGAGCAAAACTAGTAGAGTGTTCATTGAACTACGGTAGTCTTTGTGGTGAAAGAAAGCCAAAAAAAATCGGGGAAAAAACGAGGCCAGAACATCATAAGAATGGGTTTAATTAGGAGGAAAACTTAAAAAAAAGGTCACGCCACAGTTTTTTTTTCGAAAGTGTAAAGTTCTATGAGTTCATACCGTCCCTACAAATCTGAGTTTTTCTTTGAAGGTTTTCTTGGCTGGCATCATTTAACCATCGTTGTATACGGTAGGAAAAACTGTAAAACTTTCTGAATATGTGGTTTAATTAGAGATTTCTGTGTTGCCAATCTGTGTGAAAACAACGCTCTATTTTTCAATGTCATGGCCTAATTTGTCTAGGTCACTTCTTATTTATGCAAATTACAGTTCAAATTCAGCTGTTCCTACTGTGGTTATCAGTTTTTATTCAATTTATTATGAACACTTCTTCGGGATTTAGAACATTGCATTCGACTACGTTCAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>219 183 119 72 65 65 62 57 53 38 30 16 12 9</canonical_bands>
                <polymorphic_bands>219 183 135 72 65 65 62 57 53 38 30 12 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTAGAAAATAGAGAGAGGAATGA</pcr_primer_p1>
		<pcr_primer_p2>GACGGTATGAACTCATAGAACTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CCTAGAAAATAGAGAGAGGAATGAGCCAATATCTCATAAATTTTTACCGAAAGAAATTAGAGCGATGAGCAAAACTAGTAGAGTGTTCATTGAACTACGGTAGTCTTTGTGGTGAAAGAAAGCCAAAAAAAATCGGGGAAAAAACGAGGCCAGAACATCATAAGAATGGGTTTAATTAGGAGGAAAACTTAAAAAAAAGGTCACGCCACAGTTTTTTTTTCGAAAGTGTAAAGTTCTATGAGTTCATACCGTC</canonical_amplicon>
		<polymorphic_amplicon>CCTAGAAAATAGAGAGAGGAATGAGCCAATATCTCATAAATTTTTACCGAAAGAAATKAGAGCGATGAGCAAAACTAGTAGAGTGTTCATTGAACTACGGTAGTCTTTGTGGTGAAAGAAAGCCAAAAAAAATCGGGGAAAAAACGAGGCCAGAACATCATAAGAATGGGTTTAATTAGGAGGAAAACTTAAAAAAAAGGTCACGCCACAGTTTTTTTTTCGAAAGTGTAAAGTTCTATGAGTTCATACCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11607</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>91113</contig_pos>
        <strand>-</strand>
        <context>AAGTAGGAAA[C/T]TGAAACAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGCCATTGCTGTTGAGTGTGCTGAGCTTTTCTCTGAAACAAGTAGGAAA</left_flank>
        <right_flank>TGAAACAAAGAAAAGAAGACATTAAAAGTTAAAACGAAAGAGAGGAAAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGCAGTGACGACGATTTGGCGAGAACGGAACAGACTTCCATTCATCACGAGAGCATTTTCGATGCTCTCAGCAGAAGCAAACTCGATGTATGCGAAACTGAAAATTGGAAAAATGAACGATATATTCAGACGGAATAGAAAGACCAGTCTGAACACTCAAACCAAACTCACTTCTTCTGTTTTTTGGTGAACTTGTCCTTTGGAATAGTGGTTCGAATGATTTCACCGCATCCTTTGAAGTGTTCTTCGATATCTTCGATCGAAGATCCAAAGTCTACGTTACCGATGAACACCGATCTGGAATCGATCTCCTTCTGTTCTTCGGCAGTTGGTGGAATCATTTTCGTTGGCATTTCCATCTTTTCTGCAATCTCATTTTGAATCTCTCGGAGAGCGGCAGCTTCAGCCTCGATCTCCAACTCCATTGAATTACAGTTGTTGTCGGATTGAGCCATTGCTGTTGAGTGTGCTGAGCTTTTCTCTGAAACAAGTAGGAAAGTGAAACAAAGAAAAGAAGACATTAAAAGTTAAAACGAAAGAGAGGAAAGGTACACAACCGTCCAAGTCGAGAAACAAAATGAGAAGGAATGGGAGAATAAATGGATCTTCCCACACCGATGCTACATCCAGGTGTGCCCATAATCTCCTTCACCTCGTCTTGCAGATCAAAGAAACCCATCTTCACATGGTCACCGTTTATGGGAAAAAAAGGAAAGAGCAGAACAGTAGTGTATCGTGTGATTTCTAAAATCAATGGCTGTCGGCTTATAACTTCTGGTCAAAAGTTGATGGGGGTTCGGCTTTTGGAAGTTGGCCAGGTTCTGGTCGGAATTTGGCTAAAAACGGCTGTATAGCGAGCCATTGTCACATTTTGATAGGTTATTGAAAGTTGCAATAAAAAATTAGATCGGAACCTTATCATAAATTTGTTGGAGTTTAGTAGCGGTCTTATCCGGAATCTGACCCACATGTTACCAGAAGTTATCAACGACGCCCGCG</canonical>
            <polymorphic>TGGCAGTGACGACGATTTGGCGAGAACGGAACAGACTTCCATTCATCACGAGAGCATTTTCGATGCTCTCAGCAGAAGCAAACTCGATGTATGCGAAACTGAAAATTGGAAAAATGAACGATATATTCAGACGGAATAGAAAGACCAGTCTGAACACTCAAACCAAACTCACTTCTTCTGTTTTTTGGTGAACTTGTCCTTTGGAATAGTGGTTCGAATGATTTCACCGCATCCTTTGAAGTGTTCTTCGATATCTTCGATCGAAGATCCAAAGTCTACGTTACCGATGAACACCGATCTGGAATCGATCTCCTTCTGTTCTTCGGCAGTTGGTGGAATCATTTTCGTTGGCATTTCCATCTTTTCTGCAATCTCATTTTGAATCTCTCGGAGAGCGGCAGCTTCAGCCTCGATCTCCAACTCCATTGAATTACAGTTGTTGTCGGATTGAGCCATTGCTGTTGAGTGTGCTGAGCTTTTCTCTGAAACAAGTAGGAAAYTGAAACAAAGAAAAGAAGACATTAAAAGTTAAAACGAAAGAGAGGAAAGGTACACAACCGTCCAAGTCGAGAAACAAAATGAGAAGGAATGGGAGAATAAATGGATCTTCCCACACCGATGCTACATCCAGGTGTGCCCATAATCTCCTTCACCTCGTCTTGCAGATCAAAGAAACCCATCTTCACATGGTCACCGTTTATGGGAAAAAAAGGAAAGAGCAGAACAGTAGTGTATCGTGTGATTTCTAAAATCAATGGCTGTCGGCTTATAACTTCTGGTCAAAAGTTGATGGGGGTTCGGCTTTTGGAAGTTGGCCAGGTTCTGGTCGGAATTTGGCTAAAAACGGCTGTATAGCGAGCCATTGTCACATTTTGATAGGTTATTGAAAGTTGCAATAAAAAATTAGATCGGAACCTTATCATAAATTTGTTGGAGTTTAGTAGCGGTCTTATCCGGAATCTGACCCACATGTTACCAGAAGTTATCAACGACGCCCGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>133 127 108 100 59 52 50 42 40 39 33 32 32 21 19 19 17 16 15 15 8 8 7 2 2 2 2</canonical_bands>
                <polymorphic_bands>133 127 108 100 84 59 50 42 40 39 33 32 21 19 19 17 16 15 15 8 8 7 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTTTTCTGCAATCTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>AGATCCATTTATTCTCCCATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTTTTCTGCAATCTCATTTTGAATCTCTCGGAGAGCGGCAGCTTCAGCCTCGATCTCCAACTCCATTGAATTACAGTTGTTGTCGGATTGAGCCATTGCTGTTGAGTGTGCTGAGCTTTTCTCTGAAACAAGTAGGAAAGTGAAACAAAGAAAAGAAGACATTAAAAGTTAAAACGAAAGAGAGGAAAGGTACACAACCGTCCAAGTCGAGAAACAAAATGAGAAGGAATGGGAGAATAAATGGATCT</canonical_amplicon>
		<polymorphic_amplicon>ATCTTTTCTGCAATCTCATTTTGAATCTCTCGGAGAGCGGCAGCTTCAGCCTCGATCTCCAACTCCATTGAATTACAGTTGTTGTCGGATTGAGCCATTGCTGTTGAGTGTGCTGAGCTTTTCTCTGAAACAAGTAGGAAAYTGAAACAAAGAAAAGAAGACATTAAAAGTTAAAACGAAAGAGAGGAAAGGTACACAACCGTCCAAGTCGAGAAACAAAATGAGAAGGAATGGGAGAATAAATGGATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11608</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>91071</contig_pos>
        <strand>-</strand>
        <context>TTGAGCCATT[A/C]CTGTTGAGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCTCGATCTCCAACTCCATTGAATTACAGTTGTTGTCGGATTGAGCCATT</left_flank>
        <right_flank>CTGTTGAGTGTGCTGAGCTTTTCTCTGAAACAAGTAGGAAAGTGAAACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCCTCCTCTCTGTGCTCCCATACCTGGCTTATTGGTTCTCTTGGCAGTGACGACGATTTGGCGAGAACGGAACAGACTTCCATTCATCACGAGAGCATTTTCGATGCTCTCAGCAGAAGCAAACTCGATGTATGCGAAACTGAAAATTGGAAAAATGAACGATATATTCAGACGGAATAGAAAGACCAGTCTGAACACTCAAACCAAACTCACTTCTTCTGTTTTTTGGTGAACTTGTCCTTTGGAATAGTGGTTCGAATGATTTCACCGCATCCTTTGAAGTGTTCTTCGATATCTTCGATCGAAGATCCAAAGTCTACGTTACCGATGAACACCGATCTGGAATCGATCTCCTTCTGTTCTTCGGCAGTTGGTGGAATCATTTTCGTTGGCATTTCCATCTTTTCTGCAATCTCATTTTGAATCTCTCGGAGAGCGGCAGCTTCAGCCTCGATCTCCAACTCCATTGAATTACAGTTGTTGTCGGATTGAGCCATTGCTGTTGAGTGTGCTGAGCTTTTCTCTGAAACAAGTAGGAAAGTGAAACAAAGAAAAGAAGACATTAAAAGTTAAAACGAAAGAGAGGAAAGGTACACAACCGTCCAAGTCGAGAAACAAAATGAGAAGGAATGGGAGAATAAATGGATCTTCCCACACCGATGCTACATCCAGGTGTGCCCATAATCTCCTTCACCTCGTCTTGCAGATCAAAGAAACCCATCTTCACATGGTCACCGTTTATGGGAAAAAAAGGAAAGAGCAGAACAGTAGTGTATCGTGTGATTTCTAAAATCAATGGCTGTCGGCTTATAACTTCTGGTCAAAAGTTGATGGGGGTTCGGCTTTTGGAAGTTGGCCAGGTTCTGGTCGGAATTTGGCTAAAAACGGCTGTATAGCGAGCCATTGTCACATTTTGATAGGTTATTGAAAGTTGCAATAAAAAATTAGATCGGAACCTTATCATAAATTTGTTGGAGTTTAGTAGCGGTCTTATCCGGA</canonical>
            <polymorphic>GGCCTCCTCTCTGTGCTCCCATACCTGGCTTATTGGTTCTCTTGGCAGTGACGACGATTTGGCGAGAACGGAACAGACTTCCATTCATCACGAGAGCATTTTCGATGCTCTCAGCAGAAGCAAACTCGATGTATGCGAAACTGAAAATTGGAAAAATGAACGATATATTCAGACGGAATAGAAAGACCAGTCTGAACACTCAAACCAAACTCACTTCTTCTGTTTTTTGGTGAACTTGTCCTTTGGAATAGTGGTTCGAATGATTTCACCGCATCCTTTGAAGTGTTCTTCGATATCTTCGATCGAAGATCCAAAGTCTACGTTACCGATGAACACCGATCTGGAATCGATCTCCTTCTGTTCTTCGGCAGTTGGTGGAATCATTTTCGTTGGCATTTCCATCTTTTCTGCAATCTCATTTTGAATCTCTCGGAGAGCGGCAGCTTCAGCCTCGATCTCCAACTCCATTGAATTACAGTTGTTGTCGGATTGAGCCATTMCTGTTGAGTGTGCTGAGCTTTTCTCTGAAACAAGTAGGAAAGTGAAACAAAGAAAAGAAGACATTAAAAGTTAAAACGAAAGAGAGGAAAGGTACACAACCGTCCAAGTCGAGAAACAAAATGAGAAGGAATGGGAGAATAAATGGATCTTCCCACACCGATGCTACATCCAGGTGTGCCCATAATCTCCTTCACCTCGTCTTGCAGATCAAAGAAACCCATCTTCACATGGTCACCGTTTATGGGAAAAAAAGGAAAGAGCAGAACAGTAGTGTATCGTGTGATTTCTAAAATCAATGGCTGTCGGCTTATAACTTCTGGTCAAAAGTTGATGGGGGTTCGGCTTTTGGAAGTTGGCCAGGTTCTGGTCGGAATTTGGCTAAAAACGGCTGTATAGCGAGCCATTGTCACATTTTGATAGGTTATTGAAAGTTGCAATAAAAAATTAGATCGGAACCTTATCATAAATTTGTTGGAGTTTAGTAGCGGTCTTATCCGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATCGATCTCCTTCTGTTCT</pcr_primer_p1>
		<pcr_primer_p2>CTTTCCTCTCTTTCGTTTTAACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAATCGATCTCCTTCTGTTCTTCGGCAGTTGGTGGAATCATTTTCGTTGGCATTTCCATCTTTTCTGCAATCTCATTTTGAATCTCTCGGAGAGCGGCAGCTTCAGCCTCGATCTCCAACTCCATTGAATTACAGTTGTTGTCGGATTGAGCCATTGCTGTTGAGTGTGCTGAGCTTTTCTCTGAAACAAGTAGGAAAGTGAAACAAAGAAAAGAAGACATTAAAAGTTAAAACGAAAGAGAGGAAAG</canonical_amplicon>
		<polymorphic_amplicon>GAATCGATCTCCTTCTGTTCTTCGGCAGTTGGTGGAATCATTTTCGTTGGCATTTCCATCTTTTCTGCAATCTCATTTTGAATCTCTCGGAGAGCGGCAGCTTCAGCCTCGATCTCCAACTCCATTGAATTACAGTTGTTGTCGGATTGAGCCATTMCTGTTGAGTGTGCTGAGCTTTTCTCTGAAACAAGTAGGAAAGTGAAACAAAGAAAAGAAGACATTAAAAGTTAAAACGAAAGAGAGGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11609</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>90741</contig_pos>
        <strand>-</strand>
        <context>ACGATATATT[A/G]AGACGGAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCAAACTCGATGTATGCGAAACTGAAAATTGGAAAAATGAACGATATATT</left_flank>
        <right_flank>AGACGGAATAGAAAGACCAGTCTGAACACTCAAACCAAACTCACTTCTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTTACTGACAATAAAATTATTCTGTGTTGTTCTGTGGTTTATGAAGCTGTATGAAATGAAAAGGCAGAACATGGGGAAAATGCAAAAATTATGAGTTGAGAGATGAATTGTTATAATGAGAGTTCGTAACAGTTAATAGCAAACAATCGGATGAGCCAAAGTGATTTTGAAGCTAACTGGAGCCCGAAGCGATAAGAGCCAAATCAATACGGATTGAATCGCCCTCTGAATCCACCACGTCCTCTTGGAGATGATCCATTGACGTAGACGTACTTGACGACTACTGTCTGTTGTCCTCCTCTGCCTCCACGGAATCCACCACGTCCACGGCCTCCTCTCTGTGCTCCCATACCTGGCTTATTGGTTCTCTTGGCAGTGACGACGATTTGGCGAGAACGGAACAGACTTCCATTCATCACGAGAGCATTTTCGATGCTCTCAGCAGAAGCAAACTCGATGTATGCGAAACTGAAAATTGGAAAAATGAACGATATATTCAGACGGAATAGAAAGACCAGTCTGAACACTCAAACCAAACTCACTTCTTCTGTTTTTTGGTGAACTTGTCCTTTGGAATAGTGGTTCGAATGATTTCACCGCATCCTTTGAAGTGTTCTTCGATATCTTCGATCGAAGATCCAAAGTCTACGTTACCGATGAACACCGATCTGGAATCGATCTCCTTCTGTTCTTCGGCAGTTGGTGGAATCATTTTCGTTGGCATTTCCATCTTTTCTGCAATCTCATTTTGAATCTCTCGGAGAGCGGCAGCTTCAGCCTCGATCTCCAACTCCATTGAATTACAGTTGTTGTCGGATTGAGCCATTGCTGTTGAGTGTGCTGAGCTTTTCTCTGAAACAAGTAGGAAAGTGAAACAAAGAAAAGAAGACATTAAAAGTTAAAACGAAAGAGAGGAAAGGTACACAACCGTCCAAGTCGAGAAACAAAATGAGAAGGAATGGGAGAATAAATGGATCTTCCCACACCGATGCTACATC</canonical>
            <polymorphic>AAGTTACTGACAATAAAATTATTCTGTGTTGTTCTGTGGTTTATGAAGCTGTATGAAATGAAAAGGCAGAACATGGGGAAAATGCAAAAATTATGAGTTGAGAGATGAATTGTTATAATGAGAGTTCGTAACAGTTAATAGCAAACAATCGGATGAGCCAAAGTGATTTTGAAGCTAACTGGAGCCCGAAGCGATAAGAGCCAAATCAATACGGATTGAATCGCCCTCTGAATCCACCACGTCCTCTTGGAGATGATCCATTGACGTAGACGTACTTGACGACTACTGTCTGTTGTCCTCCTCTGCCTCCACGGAATCCACCACGTCCACGGCCTCCTCTCTGTGCTCCCATACCTGGCTTATTGGTTCTCTTGGCAGTGACGACGATTTGGCGAGAACGGAACAGACTTCCATTCATCACGAGAGCATTTTCGATGCTCTCAGCAGAAGCAAACTCGATGTATGCGAAACTGAAAATTGGAAAAATGAACGATATATTRAGACGGAATAGAAAGACCAGTCTGAACACTCAAACCAAACTCACTTCTTCTGTTTTTTGGTGAACTTGTCCTTTGGAATAGTGGTTCGAATGATTTCACCGCATCCTTTGAAGTGTTCTTCGATATCTTCGATCGAAGATCCAAAGTCTACGTTACCGATGAACACCGATCTGGAATCGATCTCCTTCTGTTCTTCGGCAGTTGGTGGAATCATTTTCGTTGGCATTTCCATCTTTTCTGCAATCTCATTTTGAATCTCTCGGAGAGCGGCAGCTTCAGCCTCGATCTCCAACTCCATTGAATTACAGTTGTTGTCGGATTGAGCCATTGCTGTTGAGTGTGCTGAGCTTTTCTCTGAAACAAGTAGGAAAGTGAAACAAAGAAAAGAAGACATTAAAAGTTAAAACGAAAGAGAGGAAAGGTACACAACCGTCCAAGTCGAGAAACAAAATGAGAAGGAATGGGAGAATAAATGGATCTTCCCACACCGATGCTACATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>272 239 151 144 78 55 39 22</canonical_bands>
                <polymorphic_bands>294 239 151 144 78 55 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACCTGGCTTATTGGTTCTCT</pcr_primer_p1>
		<pcr_primer_p2>GTGAAATCATTCGAACCACTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATACCTGGCTTATTGGTTCTCTTGGCAGTGACGACGATTTGGCGAGAACGGAACAGACTTCCATTCATCACGAGAGCATTTTCGATGCTCTCAGCAGAAGCAAACTCGATGTATGCGAAACTGAAAATTGGAAAAATGAACGATATATTCAGACGGAATAGAAAGACCAGTCTGAACACTCAAACCAAACTCACTTCTTCTGTTTTTTGGTGAACTTGTCCTTTGGAATAGTGGTTCGAATGATTTCAC</canonical_amplicon>
		<polymorphic_amplicon>ATACCTGGCTTATTGGTTCTCTTGGCAGTGACGACGATTTGGCGAGAACGGAACAGACTTCCATTCATCACGAGAGCATTTTCGATGCTCTCAGCAGAAGCAAACTCGATGTATGCGAAACTGAAAATTGGAAAAATGAACGATATATTRAGACGGAATAGAAAGACCAGTCTGAACACTCAAACCAAACTCACTTCTTCTGTTTTTTGGTGAACTTGTCCTTTGGAATAGTGGTTCGAATGATTTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11610</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>91347</contig_pos>
        <strand>+</strand>
        <context>ACAGTAGTGT[A/T]TCGTGTGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CACATGGTCACCGTTTATGGGAAAAAAAGGAAAGAGCAGAACAGTAGTGT</left_flank>
        <right_flank>TCGTGTGATTTCTAAAATCAATGGCTGTCGGCTTATAACTTCTGGTCAAA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAAGTGTTCTTCGATATCTTCGATCGAAGATCCAAAGTCTACGTTACCGATGAACACCGATCTGGAATCGATCTCCTTCTGTTCTTCGGCAGTTGGTGGAATCATTTTCGTTGGCATTTCCATCTTTTCTGCAATCTCATTTTGAATCTCTCGGAGAGCGGCAGCTTCAGCCTCGATCTCCAACTCCATTGAATTACAGTTGTTGTCGGATTGAGCCATTGCTGTTGAGTGTGCTGAGCTTTTCTCTGAAACAAGTAGGAAAGTGAAACAAAGAAAAGAAGACATTAAAAGTTAAAACGAAAGAGAGGAAAGGTACACAACCGTCCAAGTCGAGAAACAAAATGAGAAGGAATGGGAGAATAAATGGATCTTCCCACACCGATGCTACATCCAGGTGTGCCCATAATCTCCTTCACCTCGTCTTGCAGATCAAAGAAACCCATCTTCACATGGTCACCGTTTATGGGAAAAAAAGGAAAGAGCAGAACAGTAGTGTATCGTGTGATTTCTAAAATCAATGGCTGTCGGCTTATAACTTCTGGTCAAAAGTTGATGGGGGTTCGGCTTTTGGAAGTTGGCCAGGTTCTGGTCGGAATTTGGCTAAAAACGGCTGTATAGCGAGCCATTGTCACATTTTGATAGGTTATTGAAAGTTGCAATAAAAAATTAGATCGGAACCTTATCATAAATTTGTTGGAGTTTAGTAGCGGTCTTATCCGGAATCTGACCCACATGTTACCAGAAGTTATCAACGACGCCCGCGTACATATCAAATTTAGGACTTCGAAGAGTACTTATTTTCGCATGGTGAAAATATGAAGAAATACAACAGGTTATAACTAATTGTGAGAATGAAAGAAATACAAAGATATAAGTAGTAAACCAGGGAAATAAATAAGACTCTAATGAAATCAATAGTGACGAGAATAAAAAGAAGACGACCTATACACAATGAATAATAAGTGTCTTTTGCTTTCTATATACACCCCGTCCAGGT</canonical>
            <polymorphic>TTTGAAGTGTTCTTCGATATCTTCGATCGAAGATCCAAAGTCTACGTTACCGATGAACACCGATCTGGAATCGATCTCCTTCTGTTCTTCGGCAGTTGGTGGAATCATTTTCGTTGGCATTTCCATCTTTTCTGCAATCTCATTTTGAATCTCTCGGAGAGCGGCAGCTTCAGCCTCGATCTCCAACTCCATTGAATTACAGTTGTTGTCGGATTGAGCCATTGCTGTTGAGTGTGCTGAGCTTTTCTCTGAAACAAGTAGGAAAGTGAAACAAAGAAAAGAAGACATTAAAAGTTAAAACGAAAGAGAGGAAAGGTACACAACCGTCCAAGTCGAGAAACAAAATGAGAAGGAATGGGAGAATAAATGGATCTTCCCACACCGATGCTACATCCAGGTGTGCCCATAATCTCCTTCACCTCGTCTTGCAGATCAAAGAAACCCATCTTCACATGGTCACCGTTTATGGGAAAAAAAGGAAAGAGCAGAACAGTAGTGTWTCGTGTGATTTCTAAAATCAATGGCTGTCGGCTTATAACTTCTGGTCAAAAGTTGATGGGGGTTCGGCTTTTGGAAGTTGGCCAGGTTCTGGTCGGAATTTGGCTAAAAACGGCTGTATAGCGAGCCATTGTCACATTTTGATAGGTTATTGAAAGTTGCAATAAAAAATTAGATCGGAACCTTATCATAAATTTGTTGGAGTTTAGTAGCGGTCTTATCCGGAATCTGACCCACATGTTACCAGAAGTTATCAACGACGCCCGCGTACATATCAAATTTAGGACTTCGAAGAGTACTTATTTTCGCATGGTGAAAATATGAAGAAATACAACAGGTTATAACTAATTGTGAGAATGAAAGAAATACAAAGATATAAGTAGTAAACCAGGGAAATAAATAAGACTCTAATGAAATCAATAGTGACGAGAATAAAAAGAAGACGACCTATACACAATGAATAATAAGTGTCTTTTGCTTTCTATATACACCCCGTCCAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCACATGGTCACCGTTTAT</pcr_primer_p1>
		<pcr_primer_p2>TCGAAGTCCTAAATTTGATATGT</pcr_primer_p2>
		<pcr_amplicon_size>343</pcr_amplicon_size>
		<canonical_amplicon>TTCACATGGTCACCGTTTATGGGAAAAAAAGGAAAGAGCAGAACAGTAGTGTATCGTGTGATTTCTAAAATCAATGGCTGTCGGCTTATAACTTCTGGTCAAAAGTTGATGGGGGTTCGGCTTTTGGAAGTTGGCCAGGTTCTGGTCGGAATTTGGCTAAAAACGGCTGTATAGCGAGCCATTGTCACATTTTGATAGGTTATTGAAAGTTGCAATAAAAAATTAGATCGGAACCTTATCATAAATTTGTTGGAGTTTAGTAGCGGTCTTATCCGGAATCTGACCCACATGTTACCAGAAGTTATCAACGACGCCCGCGTACATATCAAATTTAGGACTTCGA</canonical_amplicon>
		<polymorphic_amplicon>TTCACATGGTCACCGTTTATGGGAAAAAAAGGAAAGAGCAGAACAGTAGTGTWTCGTGTGATTTCTAAAATCAATGGCTGTCGGCTTATAACTTCTGGTCAAAAGTTGATGGGGGTTCGGCTTTTGGAAGTTGGCCAGGTTCTGGTCGGAATTTGGCTAAAAACGGCTGTATAGCGAGCCATTGTCACATTTTGATAGGTTATTGAAAGTTGCAATAAAAAATTAGATCGGAACCTTATCATAAATTTGTTGGAGTTTAGTAGCGGTCTTATCCGGAATCTGACCCACATGTTACCAGAAGTTATCAACGACGCCCGCGTACATATCAAATTTAGGACTTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11611</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>95109</contig_pos>
        <strand>-</strand>
        <context>AATGATAWAG[A/G/T/C]TACATGTTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G/T/C</alleles>
        <left_flank>TGAATAGAAAATCTGGGGAAAAAAGAAAACAGTATTAAAAAATGATATAG</left_flank>
        <right_flank>TACATGTTATATTTCTCTGCCTCCTCGTTGGATTCTTTCATGTCGGATAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAAAACGAGCTGTTTGGGGGTACTGTATGAAGCAGAAAATAAATAAGTTAAAAGGGGTCGAATCAGTAAAAAGGAGAAATTCGGAAAAGAGGGAAAAGGTGTAAGAGAGATAACTGAAAACGACGTAATTGAAAATGAAAAAAAAAGAGAAGAGCTGTCAGGATGATGTTTTTAGAGCAAAGAATAGGGGGGAATAATTACCAGGATAATCACAAAAATAAAGAAAATTTAGCGCAGGGATAAGCAACAATAACCATTGGAACCGAGAAGAAGAGAGCAAATTTTTGGAGCACACAATTACACAAAATAGTTAGATTGGCACCAGTTGCCACGCTTCACATCACTGATAAAATTCAGCGGGAGCAGCGGGGGGAAATATGCTGGAAGAAGAAATTAGGATAGATGATGGCTGAAACAAAAAAGAAAACGAGTACCTATGATTGAAATATGAATAGAAAATCTGGGGAAAAAAGAAAACAGTATTAAAAAATGATATAGTTACATGTTATATTTCTCTGCCTCCTCGTTGGATTCTTTCATGTCGGATAGCACTCTGAAAACCAACAATTAGACTAGAGAAGACAAGAAATTGTCTTACCTAGCAAATCTATTCCATTCTTCACTTTTCAGAACGTACAAACTTTCTCGAACATCGTACATATGCACACGACCCTCATCGTCTCCAACAAACACGTGTTTACCATCAGCCGACCAGATCAGCTTGTTCATGTACACCGTGTCTCCTTCTGCACCTGCTCGAAGTCGTGCCACTGGACCTTCCACATCTTCGTTCAGATTCCATACGAAGATCTGTAGAAAATTGAATCATAGTCTGAGCTATAATTTTTTGAATTTTTACGTTTCCATCGGCGTCAATGGATGCAAAAACAGCAGGATGGACTGGAGACCAGGCGACATCAAGTACAAGATCTGGGTGGGATTCAAAGGAGAACTTCAGATTTGCATCCTTGGTGCTCCATAATTTGATGGTCCAGTCGT</canonical>
            <polymorphic>ACAAAACGAGCTGTTTGGGGGTACTGTATGAAGCAGAAAATAAATAAGTTAAAAGGGGTCGAATCAGTAAAAAGGAGAAATTCGGAAAAGAGGGAAAAGGTGTAAGAGAGATAACTGAAAACGACGTAATTGAAAATGAAAAAAAAAGAGAAGAGCTGTCAGGATGATGTTTTTAGAGCAAAGAATAGGGGGGAATAATTACCAGGATAATCACAAAAATAAAGAAAATTTAGCGCAGGGATAAGCAACAATAACCATTGGAACCGAGAAGAAGAGAGCAAATTTTTGGAGCACACAATTACACAAAATAGTTAGATTGGCACCAGTTGCCACGCTTCACATCACTGATAAAATTCAGCGGGAGCAGCGGGGGGAAATATGCTGGAAGAAGAAATTAGGATAGATGATGGCTGAAACAAAAAAGAAAACGAGTACCTATGATTGAAATATGAATAGAAAATCTGGGGAAAAAAGAAAACAGTATTAAAAAATGATATAGRTACATGTTATATTTCTCTGCCTCCTCGTTGGATTCTTTCATGTCGGATAGCACTCTGAAAACCAACAATTAGACTAGAGAAGACAAGAAATTGTCTTACCTAGCAAATCTATTCCATTCTTCACTTTTCAGAACGTACAAACTTTCTCGAACATCGTACATATGCACACGACCCTCATCGTCTCCAACAAACACGTGTTTACCATCAGCCGACCAGATCAGCTTGTTCATGTACACCGTGTCTCCTTCTGCACCTGCTCGAAGTCGTGCCACTGGACCTTCCACATCTTCGTTCAGATTCCATACGAAGATCTGTAGAAAATTGAATCATAGTCTGAGCTATAATTTTTTGAATTTTTACGTTTCCATCGGCGTCAATGGATGCAAAAACAGCAGGATGGACTGGAGACCAGGCGACATCAAGTACAAGATCTGGGTGGGATTCAAAGGAGAACTTCAGATTTGCATCCTTGGTGCTCCATAATTTGATGGTCCAGTCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTGGAAGAAGAAATTAGGATAG</pcr_primer_p1>
		<pcr_primer_p2>TGAAAAGTGAAGAATGGAATAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTGGAAGAAGAAATTAGGATAGATGATGGCTGAAACAAAAAAGAAAACGAGTACCTATGATTGAAATATGAATAGAAAATCTGGGGAAAAAAGAAAACAGTATTAAAAAATGATATAGTTACATGTTATATTTCTCTGCCTCCTCGTTGGATTCTTTCATGTCGGATAGCACTCTGAAAACCAACAATTAGACTAGAGAAGACAAGAAATTGTCTTACCTAGCAAATCTATTCCATTCTTCACTTTTCA</canonical_amplicon>
		<polymorphic_amplicon>GCTGGAAGAAGAAATTAGGATAGATGATGGCTGAAACAAAAAAGAAAACGAGTACCTATGATTGAAATATGAATAGAAAATCTGGGGAAAAAAGAAAACAGTATTAAAAAATGATATAGRTACATGTTATATTTCTCTGCCTCCTCGTTGGATTCTTTCATGTCGGATAGCACTCTGAAAACCAACAATTAGACTAGAGAAGACAAGAAATTGTCTTACCTAGCAAATCTATTCCATTCTTCACTTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11612</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>95106</contig_pos>
        <strand>-</strand>
        <context>AAAAATGATA[A/T]AGRTACATGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATATGAATAGAAAATCTGGGGAAAAAAGAAAACAGTATTAAAAAATGATA</left_flank>
        <right_flank>AGTTACATGTTATATTTCTCTGCCTCCTCGTTGGATTCTTTCATGTCGGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAACAAAACGAGCTGTTTGGGGGTACTGTATGAAGCAGAAAATAAATAAGTTAAAAGGGGTCGAATCAGTAAAAAGGAGAAATTCGGAAAAGAGGGAAAAGGTGTAAGAGAGATAACTGAAAACGACGTAATTGAAAATGAAAAAAAAAGAGAAGAGCTGTCAGGATGATGTTTTTAGAGCAAAGAATAGGGGGGAATAATTACCAGGATAATCACAAAAATAAAGAAAATTTAGCGCAGGGATAAGCAACAATAACCATTGGAACCGAGAAGAAGAGAGCAAATTTTTGGAGCACACAATTACACAAAATAGTTAGATTGGCACCAGTTGCCACGCTTCACATCACTGATAAAATTCAGCGGGAGCAGCGGGGGGAAATATGCTGGAAGAAGAAATTAGGATAGATGATGGCTGAAACAAAAAAGAAAACGAGTACCTATGATTGAAATATGAATAGAAAATCTGGGGAAAAAAGAAAACAGTATTAAAAAATGATATAGTTACATGTTATATTTCTCTGCCTCCTCGTTGGATTCTTTCATGTCGGATAGCACTCTGAAAACCAACAATTAGACTAGAGAAGACAAGAAATTGTCTTACCTAGCAAATCTATTCCATTCTTCACTTTTCAGAACGTACAAACTTTCTCGAACATCGTACATATGCACACGACCCTCATCGTCTCCAACAAACACGTGTTTACCATCAGCCGACCAGATCAGCTTGTTCATGTACACCGTGTCTCCTTCTGCACCTGCTCGAAGTCGTGCCACTGGACCTTCCACATCTTCGTTCAGATTCCATACGAAGATCTGTAGAAAATTGAATCATAGTCTGAGCTATAATTTTTTGAATTTTTACGTTTCCATCGGCGTCAATGGATGCAAAAACAGCAGGATGGACTGGAGACCAGGCGACATCAAGTACAAGATCTGGGTGGGATTCAAAGGAGAACTTCAGATTTGCATCCTTGGTGCTCCATAATTTGATGGTCCAGT</canonical>
            <polymorphic>AGAACAAAACGAGCTGTTTGGGGGTACTGTATGAAGCAGAAAATAAATAAGTTAAAAGGGGTCGAATCAGTAAAAAGGAGAAATTCGGAAAAGAGGGAAAAGGTGTAAGAGAGATAACTGAAAACGACGTAATTGAAAATGAAAAAAAAAGAGAAGAGCTGTCAGGATGATGTTTTTAGAGCAAAGAATAGGGGGGAATAATTACCAGGATAATCACAAAAATAAAGAAAATTTAGCGCAGGGATAAGCAACAATAACCATTGGAACCGAGAAGAAGAGAGCAAATTTTTGGAGCACACAATTACACAAAATAGTTAGATTGGCACCAGTTGCCACGCTTCACATCACTGATAAAATTCAGCGGGAGCAGCGGGGGGAAATATGCTGGAAGAAGAAATTAGGATAGATGATGGCTGAAACAAAAAAGAAAACGAGTACCTATGATTGAAATATGAATAGAAAATCTGGGGAAAAAAGAAAACAGTATTAAAAAATGATAWAGTTACATGTTATATTTCTCTGCCTCCTCGTTGGATTCTTTCATGTCGGATAGCACTCTGAAAACCAACAATTAGACTAGAGAAGACAAGAAATTGTCTTACCTAGCAAATCTATTCCATTCTTCACTTTTCAGAACGTACAAACTTTCTCGAACATCGTACATATGCACACGACCCTCATCGTCTCCAACAAACACGTGTTTACCATCAGCCGACCAGATCAGCTTGTTCATGTACACCGTGTCTCCTTCTGCACCTGCTCGAAGTCGTGCCACTGGACCTTCCACATCTTCGTTCAGATTCCATACGAAGATCTGTAGAAAATTGAATCATAGTCTGAGCTATAATTTTTTGAATTTTTACGTTTCCATCGGCGTCAATGGATGCAAAAACAGCAGGATGGACTGGAGACCAGGCGACATCAAGTACAAGATCTGGGTGGGATTCAAAGGAGAACTTCAGATTTGCATCCTTGGTGCTCCATAATTTGATGGTCCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTGGAAGAAGAAATTAGGATAG</pcr_primer_p1>
		<pcr_primer_p2>TGAAAAGTGAAGAATGGAATAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTGGAAGAAGAAATTAGGATAGATGATGGCTGAAACAAAAAAGAAAACGAGTACCTATGATTGAAATATGAATAGAAAATCTGGGGAAAAAAGAAAACAGTATTAAAAAATGATATAGTTACATGTTATATTTCTCTGCCTCCTCGTTGGATTCTTTCATGTCGGATAGCACTCTGAAAACCAACAATTAGACTAGAGAAGACAAGAAATTGTCTTACCTAGCAAATCTATTCCATTCTTCACTTTTCA</canonical_amplicon>
		<polymorphic_amplicon>GCTGGAAGAAGAAATTAGGATAGATGATGGCTGAAACAAAAAAGAAAACGAGTACCTATGATTGAAATATGAATAGAAAATCTGGGGAAAAAAGAAAACAGTATTAAAAAATGATAWAGTTACATGTTATATTTCTCTGCCTCCTCGTTGGATTCTTTCATGTCGGATAGCACTCTGAAAACCAACAATTAGACTAGAGAAGACAAGAAATTGTCTTACCTAGCAAATCTATTCCATTCTTCACTTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11613</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>96123</contig_pos>
        <strand>+</strand>
        <context>TATAGAAGTA[A/C]AAAAATAGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGGTTGTGTGTGTGCTTGTGTTGTGAGTGGACTCTGAAAATATAGAAGTA</left_flank>
        <right_flank>AAAAATAGATAATCATTTTAAAAACTCACTCTGTTTATGGGCAACTTACG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAGATGGGAGAAGTCAACGACACCGGAAGCACGATGGAATTCAATACCCGTTAGAGTACCGCTGTGTCCTGGAAAACATTCAGAGGTAAAAACAGGAATCTATTACGAATCAAAAGTTACCTTTGTAACAAACGTCAGTTTTGATGACAGCCGGATCTGCTCCGTTCCTCGATGCTGCCAGAATCTCTCCAGTATCTGTTCCAACTACAAACGTTTGCATCTCACCAATTGGGAACGACATTCTTGTGGCAGAAGCCTAAACATGATATTCTATAATTCTTAGATATCGCTTTCAAGACTCACTGGTTTTCCTTCTTTTGTCATCAACTCCTTTCCATCCACTGGCTGTGTTAAATTGTCAACATTCCAACTGCAAATCCGTCCGTCTCGACTCAATGAAACGAAATTATGAGCGTTTTTGGTACCCACAACTGCGAGACACGAAACTGGTTGTGTGTGTGCTTGTGTTGTGAGTGGACTCTGAAAATATAGAAGTAAAAAAATAGATAATCATTTTAAAAACTCACTCTGTTTATGGGCAACTTACGACTCGTCAACCTATTATCCCAAACACAAATCTGACCAGATTCACATCCTGCGAGAAGCAAATGAGCGTGAAATCGAGCAAAAGCTACAGATTGAATTTCTGACTGACAGTAGACGATGAATTCGGCGGTAATTCGTTTTGATTTCGTATTCCAAACAACGATGACACCCGGTGGCTCATTTGGAACGTCACATGGCTAGAACAATTTTTATAGATTAAAGAATTTTTGATTTAAATACTTACTCCATAAGAAACCGCAAGTAAATCTGGATGATGTTCCGAGAATGCCATTCCGGTTACCAATCGTTTCGCCGTCCACGTCTCATCGTAATAGACTTGAGCCAAATGAAGAAGATCATCAGAAGCCACTGCTTTCTCGTATGGATCTTTAGTATAGTTGATAAAAATGTCAATGTCTTCGTTAAGCGCACGGCCGATAACTTTGCACGAA</canonical>
            <polymorphic>AAGAGATGGGAGAAGTCAACGACACCGGAAGCACGATGGAATTCAATACCCGTTAGAGTACCGCTGTGTCCTGGAAAACATTCAGAGGTAAAAACAGGAATCTATTACGAATCAAAAGTTACCTTTGTAACAAACGTCAGTTTTGATGACAGCCGGATCTGCTCCGTTCCTCGATGCTGCCAGAATCTCTCCAGTATCTGTTCCAACTACAAACGTTTGCATCTCACCAATTGGGAACGACATTCTTGTGGCAGAAGCCTAAACATGATATTCTATAATTCTTAGATATCGCTTTCAAGACTCACTGGTTTTCCTTCTTTTGTCATCAACTCCTTTCCATCCACTGGCTGTGTTAAATTGTCAACATTCCAACTGCAAATCCGTCCGTCTCGACTCAATGAAACGAAATTATGAGCGTTTTTGGTACCCACAACTGCGAGACACGAAACTGGTTGTGTGTGTGCTTGTGTTGTGAGTGGACTCTGAAAATATAGAAGTAMAAAAATAGATAATCATTTTAAAAACTCACTCTGTTTATGGGCAACTTACGACTCGTCAACCTATTATCCCAAACACAAATCTGACCAGATTCACATCCTGCGAGAAGCAAATGAGCGTGAAATCGAGCAAAAGCTACAGATTGAATTTCTGACTGACAGTAGACGATGAATTCGGCGGTAATTCGTTTTGATTTCGTATTCCAAACAACGATGACACCCGGTGGCTCATTTGGAACGTCACATGGCTAGAACAATTTTTATAGATTAAAGAATTTTTGATTTAAATACTTACTCCATAAGAAACCGCAAGTAAATCTGGATGATGTTCCGAGAATGCCATTCCGGTTACCAATCGTTTCGCCGTCCACGTCTCATCGTAATAGACTTGAGCCAAATGAAGAAGATCATCAGAAGCCACTGCTTTCTCGTATGGATCTTTAGTATAGTTGATAAAAATGTCAATGTCTTCGTTAAGCGCACGGCCGATAACTTTGCACGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTGTCATCAACTCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>TAATAGGTTGACGAGTCGTAAGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTGTCATCAACTCCTTTCCATCCACTGGCTGTGTTAAATTGTCAACATTCCAACTGCAAATCCGTCCGTCTCGACTCAATGAAACGAAATTATGAGCGTTTTTGGTACCCACAACTGCGAGACACGAAACTGGTTGTGTGTGTGCTTGTGTTGTGAGTGGACTCTGAAAATATAGAAGTAAAAAAATAGATAATCATTTTAAAAACTCACTCTGTTTATGGGCAACTTACGACTCGTCAACCTATTA</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTGTCATCAACTCCTTTCCATCCACTGGCTGTGTTAAATTGTCAACATTCCAACTGCAAATCCGTCCGTCTCGACTCAATGAAACGAAATTATGAGCGTTTTTGGTACCCACAACTGCGAGACACGAAACTGGTTGTGTGTGTGCTTGTGTTGTGAGTGGACTCTGAAAATATAGAAGTAMAAAAATAGATAATCATTTTAAAAACTCACTCTGTTTATGGGCAACTTACGACTCGTCAACCTATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11695</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>122018</contig_pos>
        <strand>+</strand>
        <context>AAAATAATGG[A/G]TAATTGTCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTCATTAAGAACAACTAATTGAAAACGTTCAATCACTCAAAATAATGG</left_flank>
        <right_flank>TAATTGTCGAAATGCGATGGGGAAAAGAAGGATGTCGTTGAAACAATTTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTCCCGCAGTCCTAAGTTACATGGTTTTCCACTCTATCTGTCTTTATTTTTAGAAACCGTTGTGCTAATTAATCTTTGCATATCTGTAAGGTCCTTGATATCTGATAACCTGATTTTAAATACAGAGAAGCAATTCTGAAACATTCTGATATAATTTTAAATTATTAATACTAAAATTATCTGATTCGTTCAATCTTTCTCACTCTTAAATCATCTTACAAGATCTCTATATCGGATATATATTTTCAATAGATCTCAAATTTCATCAAAAAGGTGAAATCTCCGGAGAGATCTTTATCTGGATGAAATATAAACAGGAGCCAACTTTTGGAGCTATACTAGCACAAAATATATCGTGGACATAGCCAATTCAACCCTCTTCGCTTCTTTTCTGATTTTTTCTTATTTTTTACAAAAGAGATAAGCAAACTGTATCCTTCCTTCTCTTTCTCATTAAGAACAACTAATTGAAAACGTTCAATCACTCAAAATAATGGATAATTGTCGAAATGCGATGGGGAAAAGAAGGATGTCGTTGAAACAATTTCAGTTCTTCAAAAAATGATTAATGACCACAAACAGAATGATTGTATCCATAGGCGTGGTAATGGGTCCTCGTGATCTGCCACATCTTCTGATTTCCAGAAAGGCCACAGTTTCTTTTTTCTTATAATTTCAAACACTTTTTTTCAAAATCGTGTCTTGAAGTGGATGGAAAAGGAATGAGTGAAGAATCCATCATTCTTTTCGTTGACTAGTCGTCCCCTCTTTTTTTTTCTAGACGAGAAGAGATGAAAACGAAAATTGTCGGTTTCCCCTCTATACACTTTTGTCAAAGCGTGTTCCCCTTCTTAAAATCATTTGGTTCTTTATTGCTTATCTAATTGTGAAATTCAGGCCACATGACGGTTCAGTTTATCACTTTAAGCCAAAACTGTGCAAATCGCGGCTGCGGCCGGCCCAGCCTCAGGCTCAAAAAATTCAAAAAATTAGAATTT</canonical>
            <polymorphic>CTTTCCCGCAGTCCTAAGTTACATGGTTTTCCACTCTATCTGTCTTTATTTTTAGAAACCGTTGTGCTAATTAATCTTTGCATATCTGTAAGGTCCTTGATATCTGATAACCTGATTTTAAATACAGAGAAGCAATTCTGAAACATTCTGATATAATTTTAAATTATTAATACTAAAATTATCTGATTCGTTCAATCTTTCTCACTCTTAAATCATCTTACAAGATCTCTATATCGGATATATATTTTCAATAGATCTCAAATTTCATCAAAAAGGTGAAATCTCCGGAGAGATCTTTATCTGGATGAAATATAAACAGGAGCCAACTTTTGGAGCTATACTAGCACAAAATATATCGTGGACATAGCCAATTCAACCCTCTTCGCTTCTTTTCTGATTTTTTCTTATTTTTTACAAAAGAGATAAGCAAACTGTATCCTTCCTTCTCTTTCTCATTAAGAACAACTAATTGAAAACGTTCAATCACTCAAAATAATGGRTAATTGTCGAAATGCGATGGGGAAAAGAAGGATGTCGTTGAAACAATTTCAGTTCTTCAAAAAATGATTAATGACCACAAACAGAATGATTGTATCCATAGGCGTGGTAATGGGTCCTCGTGATCTGCCACATCTTCTGATTTCCAGAAAGGCCACAGTTTCTTTTTTCTTATAATTTCAAACACTTTTTTTCAAAATCGTGTCTTGAAGTGGATGGAAAAGGAATGAGTGAAGAATCCATCATTCTTTTCGTTGACTAGTCGTCCCCTCTTTTTTTTTCTAGACGAGAAGAGATGAAAACGAAAATTGTCGGTTTCCCCTCTATACACTTTTGTCAAAGCGTGTTCCCCTTCTTAAAATCATTTGGTTCTTTATTGCTTATCTAATTGTGAAATTCAGGCCACATGACGGTTCAGTTTATCACTTTAAGCCAAAACTGTGCAAATCGCGGCTGCGGCCGGCCCAGCCTCAGGCTCAAAAAATTCAAAAAATTAGAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAAATATATCGTGGACATAGC</pcr_primer_p1>
		<pcr_primer_p2>ATACAATCATTCTGTTTGTGGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACAAAATATATCGTGGACATAGCCAATTCAACCCTCTTCGCTTCTTTTCTGATTTTTTCTTATTTTTTACAAAAGAGATAAGCAAACTGTATCCTTCCTTCTCTTTCTCATTAAGAACAACTAATTGAAAACGTTCAATCACTCAAAATAATGGATAATTGTCGAAATGCGATGGGGAAAAGAAGGATGTCGTTGAAACAATTTCAGTTCTTCAAAAAATGATTAATGACCACAAACAGAATGATTGTAT</canonical_amplicon>
		<polymorphic_amplicon>ACAAAATATATCGTGGACATAGCCAATTCAACCCTCTTCGCTTCTTTTCTGATTTTTTCTTATTTTTTACAAAAGAGATAAGCAAACTGTATCCTTCCTTCTCTTTCTCATTAAGAACAACTAATTGAAAACGTTCAATCACTCAAAATAATGGRTAATTGTCGAAATGCGATGGGGAAAAGAAGGATGTCGTTGAAACAATTTCAGTTCTTCAAAAAATGATTAATGACCACAAACAGAATGATTGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11728</snp_id>
        <super_contig>c005800991.Contig1</super_contig>
        <contig_pos>24715</contig_pos>
        <strand>+</strand>
        <context>GTATATAATA[A/G]AAACTACCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCAGAAACCTATACGTTAAAGTCAAAGAAATTTCACCCCGTATATAATA</left_flank>
        <right_flank>AAACTACCAAGAACCGGTATCTATTTAGCCGCTCTTCATTAGCATAATAA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATTTTGGGGACGTTCGGGTTTTGGATCCCTTGGTGGATAAGCAGTTGGGTTTCTCATCACATTTTCAAAGCGGTCATTGTGCTGAAATTGAAAATCTTCAGCTATTTTCCGATTTTTGAATGACACCAGTTTTTGGCTCGTTTTTGTTCTGAAAATGTGAAAAAACAGGCGTTTTTCAGAAATCGGGAAATAGCTAAGAAAGTATTAACTGCCAAAAAATTCTGTGAATGCAAATTTTCTAAATCTACTATTTTACACCCTCTAACATTTCTAGAGTGACCGGAAATTTGACAAGTGAGTTTCAGACTCCTGAAAATGATCAAAATAGGCAAAATGCAACTGAAAACGACGTTTTTGTCTATCTTATTCGCCGTTGCTGTAAGCGATGTTGTTGCAAGTAGTCTTGATGTCTAATTGTTTATCTTAGCGGCTTTTTTAGAATCAGAAGTCAGAAACCTATACGTTAAAGTCAAAGAAATTTCACCCCGTATATAATAAAAACTACCAAGAACCGGTATCTATTTAGCCGCTCTTCATTAGCATAATAATGTTAACTTACATCATCGATGAAGCTTCTCCGATAGATAATCTCCTTTTTGGTTACCAGAGGTGGATGATGGCGAGACATGGTCGAAAATATGATCGACGAATGAAATGCAATATGAAGATGAAAAATGATTATGTTTTGAATCCATCTCCCCTCTTTTTCTCGCATTTTTCTCTTTATTGTTTCCGCCTACATGGTCTGAGATCAGAACCATGATCTTTTTTCCATCAAAATCGTACTATCAAATTAGTAAACAAAAAAGCATAAATGTTTATGTATAGGGAAGAAGATGTACAGAAGAAGAAAAAGCACGAATGCAAAAAGAAGCGAATTGTTTGGGAAACATCATAAAATGTACTGTTGAGTTTCAAAAGCTGTAGGCAGAATTGTGTGAAGTGTTGTGAAGGAGAACGGGTATCGATAAAAGCATGGATTATTAAATGATTTAATA</canonical>
            <polymorphic>ACATTTTGGGGACGTTCGGGTTTTGGATCCCTTGGTGGATAAGCAGTTGGGTTTCTCATCACATTTTCAAAGCGGTCATTGTGCTGAAATTGAAAATCTTCAGCTATTTTCCGATTTTTGAATGACACCAGTTTTTGGCTCGTTTTTGTTCTGAAAATGTGAAAAAACAGGCGTTTTTCAGAAATCGGGAAATAGCTAAGAAAGTATTAACTGCCAAAAAATTCTGTGAATGCAAATTTTCTAAATCTACTATTTTACACCCTCTAACATTTCTAGAGTGACCGGAAATTTGACAAGTGAGTTTCAGACTCCTGAAAATGATCAAAATAGGCAAAATGCAACTGAAAACGACGTTTTTGTCTATCTTATTCGCCGTTGCTGTAAGCGATGTTGTTGCAAGTAGTCTTGATGTCTAATTGTTTATCTTAGCGGCTTTTTTAGAATCAGAAGTCAGAAACCTATACGTTAAAGTCAAAGAAATTTCACCCCGTATATAATARAAACTACCAAGAACCGGTATCTATTTAGCCGCTCTTCATTAGCATAATAATGTTAACTTACATCATCGATGAAGCTTCTCCGATAGATAATCTCCTTTTTGGTTACCAGAGGTGGATGATGGCGAGACATGGTCGAAAATATGATCGACGAATGAAATGCAATATGAAGATGAAAAATGATTATGTTTTGAATCCATCTCCCCTCTTTTTCTCGCATTTTTCTCTTTATTGTTTCCGCCTACATGGTCTGAGATCAGAACCATGATCTTTTTTCCATCAAAATCGTACTATCAAATTAGTAAACAAAAAAGCATAAATGTTTATGTATAGGGAAGAAGATGTACAGAAGAAGAAAAAGCACGAATGCAAAAAGAAGCGAATTGTTTGGGAAACATCATAAAATGTACTGTTGAGTTTCAAAAGCTGTAGGCAGAATTGTGTGAAGTGTTGTGAAGGAGAACGGGTATCGATAAAAGCATGGATTATTAAATGATTTAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGCAAGTAGTCTTGATGTCTAA</pcr_primer_p1>
		<pcr_primer_p2>ATCATATTTTCGACCATGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTGCAAGTAGTCTTGATGTCTAATTGTTTATCTTAGCGGCTTTTTTAGAATCAGAAGTCAGAAACCTATACGTTAAAGTCAAAGAAATTTCACCCCGTATATAATAAAAACTACCAAGAACCGGTATCTATTTAGCCGCTCTTCATTAGCATAATAATGTTAACTTACATCATCGATGAAGCTTCTCCGATAGATAATCTCCTTTTTGGTTACCAGAGGTGGATGATGGCGAGACATGGTCGAAAATATGAT</canonical_amplicon>
		<polymorphic_amplicon>TTGCAAGTAGTCTTGATGTCTAATTGTTTATCTTAGCGGCTTTTTTAGAATCAGAAGTCAGAAACCTATACGTTAAAGTCAAAGAAATTTCACCCCGTATATAATARAAACTACCAAGAACCGGTATCTATTTAGCCGCTCTTCATTAGCATAATAATGTTAACTTACATCATCGATGAAGCTTCTCCGATAGATAATCTCCTTTTTGGTTACCAGAGGTGGATGATGGCGAGACATGGTCGAAAATATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11729</snp_id>
        <super_contig>c005800991.Contig1</super_contig>
        <contig_pos>25532</contig_pos>
        <strand>+</strand>
        <context>TGGTGTTTTG[A/G]GTAGGCGCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACTGAGATCTCTCCACAGAAAATCTATGAAAACTCAATTTGGTGTTTTG</left_flank>
        <right_flank>GTAGGCGCAACATGTTAAAGTAGTTTTGAAGGTTATTTGTGGACTGACAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTATGTATAGGGAAGAAGATGTACAGAAGAAGAAAAAGCACGAATGCAAAAAGAAGCGAATTGTTTGGGAAACATCATAAAATGTACTGTTGAGTTTCAAAAGCTGTAGGCAGAATTGTGTGAAGTGTTGTGAAGGAGAACGGGTATCGATAAAAGCATGGATTATTAAATGATTTAATACGTTTTGCGGAGAATTTGAATGGAGCGGTACTCGCGTTGAGTCGAGTTTGGAGAGTCGGAGTTTCCGTTGCGAAGGATTCCAGTGGTAGTGCTGACTGGAGACTCGACGCGGTATCCTGCAAAAAATGTGTTTTTAAGATCTATTTAAAAATCTTTATACCTCCATTGCGACTCTCTGAGCGGTGAGATTGAGCACGAGAGCTTGATCGCTCTTCATGAAGATTGGCATTTCCAGCGGTGTTGTAGGCGCCTGAAAAAATGTATTTCACTGAGATCTCTCCACAGAAAATCTATGAAAACTCAATTTGGTGTTTTGGGTAGGCGCAACATGTTAAAGTAGTTTTGAAGGTTATTTGTGGACTGACAGATGAAAAAATCAAAGTACTCGGTGTGATCAGTTTGGAATTTCAGTTTTACGCTAATAGTGATAATGAGGAAGGAAGTGGGGAAAAAGAGTAATTAGAGTAATTAGAGTGATTTGTGTGTAAACAGAAAATTGAGAAAATTCGGTTTTTGTGTTGGGGAAACGACCTTGCTCGAAATTGTTTCGAATCGTTTCGAACGCTTTTCGACCCGGCGACCGCTGTTCCGGTGTTACTGTCCGCTCTGAAGGTAATTAGAGGATCTACACAGATAGAAAAGAAAGAGAGAAAATGTGACATAGAAGAATACGTCAAAGAAGCAGTGTCTTTGGAATCTAACTAGACTTTGAATGCGGATTTTTGAAAGTTCTTACCACTGGTGGTAACACGAGAAGCAACTGGACTATAGGTGCGATTGTTGTCGGTTCTAGTGGTGTTTACATCATGTGGAGAAA</canonical>
            <polymorphic>TGTTTATGTATAGGGAAGAAGATGTACAGAAGAAGAAAAAGCACGAATGCAAAAAGAAGCGAATTGTTTGGGAAACATCATAAAATGTACTGTTGAGTTTCAAAAGCTGTAGGCAGAATTGTGTGAAGTGTTGTGAAGGAGAACGGGTATCGATAAAAGCATGGATTATTAAATGATTTAATACGTTTTGCGGAGAATTTGAATGGAGCGGTACTCGCGTTGAGTCGAGTTTGGAGAGTCGGAGTTTCCGTTGCGAAGGATTCCAGTGGTAGTGCTGACTGGAGACTCGACGCGGTATCCTGCAAAAAATGTGTTTTTAAGATCTATTTAAAAATCTTTATACCTCCATTGCGACTCTCTGAGCGGTGAGATTGAGCACGAGAGCTTGATCGCTCTTCATGAAGATTGGCATTTCCAGCGGTGTTGTAGGCGCCTGAAAAAATGTATTTCACTGAGATCTCTCCACAGAAAATCTATGAAAACTCAATTTGGTGTTTTGRGTAGGCGCAACATGTTAAAGTAGTTTTGAAGGTTATTTGTGGACTGACAGATGAAAAAATCAAAGTACTCGGTGTGATCAGTTTGGAATTTCAGTTTTACGCTAATAGTGATAATGAGGAAGGAAGTGGGGAAAAAGAGTAATTAGAGTAATTAGAGTGATTTGTGTGTAAACAGAAAATTGAGAAAATTCGGTTTTTGTGTTGGGGAAACGACCTTGCTCGAAATTGTTTCGAATCGTTTCGAACGCTTTTCGACCCGGCGACCGCTGTTCCGGTGTTACTGTCCGCTCTGAAGGTAATTAGAGGATCTACACAGATAGAAAAGAAAGAGAGAAAATGTGACATAGAAGAATACGTCAAAGAAGCAGTGTCTTTGGAATCTAACTAGACTTTGAATGCGGATTTTTGAAAGTTCTTACCACTGGTGGTAACACGAGAAGCAACTGGACTATAGGTGCGATTGTTGTCGGTTCTAGTGGTGTTTACATCATGTGGAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATTTCACTGAGATCTCTCCAC</pcr_primer_p1>
		<pcr_primer_p2>CGAATTTTCTCAATTTTCTGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTATTTCACTGAGATCTCTCCACAGAAAATCTATGAAAACTCAATTTGGTGTTTTGGGTAGGCGCAACATGTTAAAGTAGTTTTGAAGGTTATTTGTGGACTGACAGATGAAAAAATCAAAGTACTCGGTGTGATCAGTTTGGAATTTCAGTTTTACGCTAATAGTGATAATGAGGAAGGAAGTGGGGAAAAAGAGTAATTAGAGTAATTAGAGTGATTTGTGTGTAAACAGAAAATTGAGAAAATTCG</canonical_amplicon>
		<polymorphic_amplicon>GTATTTCACTGAGATCTCTCCACAGAAAATCTATGAAAACTCAATTTGGTGTTTTGRGTAGGCGCAACATGTTAAAGTAGTTTTGAAGGTTATTTGTGGACTGACAGATGAAAAAATCAAAGTACTCGGTGTGATCAGTTTGGAATTTCAGTTTTACGCTAATAGTGATAATGAGGAAGGAAGTGGGGAAAAAGAGTAATTAGAGTAATTAGAGTGATTTGTGTGTAAACAGAAAATTGAGAAAATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11730</snp_id>
        <super_contig>c005800991.Contig1</super_contig>
        <contig_pos>27368</contig_pos>
        <strand>+</strand>
        <context>GAAACTGTCA[C/T]GACGGGTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTCTCGGAACTCGTCGAGCCACATGTCGTTGTCCTTCCAGAAACTGTCA</left_flank>
        <right_flank>GACGGGTGAAGTCGGCATGACGGGTAGCCAATGTCATTTTTAGTTTAGTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTCGATTTTATTTTTTGAAAAAAAGCACATTTTGAAACGAGCCGAGCCAAAAAAAAAACATTATATTTGTACAGATTGATGATGCTCTAAAAATGGGAAAAGGAAGAGGGATTGGCATCGAATATAAAGAAGAGATGAAACTTTGGCTTGGGTCTCTTTCTCTCTTTCACTTCTAATAGATGTATATGTACGTAAATTCGAGTAGGACTGTCAAGTAGGCCGTCGGTTGACGACCGGATTCGAACAGTAAAACGCCTGGCAGGAAATAATATAATAGTAGCCGGAACGCAGAGAGCGTGCAGGGGAGATTCGGTTAGGTCGCGGATGAATAGCCCACCCCTCCTCATGCCCTCATCATTTTCAACAATCGGAAAATTATAAGCCTAGATGAACCCGACGACATACACGGTTGAAGAAGTCTCTTGGCTTTGGCCAATCCATTGGCCAGTCTCGGAACTCGTCGAGCCACATGTCGTTGTCCTTCCAGAAACTGTCATGACGGGTGAAGTCGGCATGACGGGTAGCCAATGTCATTTTTAGTTTAGTGGTTGAGCTTTGTTTTTTGAAGACTGAAAAATTATACAAATCATTGAGTGGATTTCGTAAGAAAAAAAAAATTAAAACGAGACAAAGCAACACCAACATATAGATATGAATAATTGCACTCTAAATGTACCTTAAAGAGAATGGCTTCCAAAAAACTCAAGACTGATAAACTAATAAAATACTAATAAATAACTCAAATTCAAAAACAGGAACACTCATATCTCAAAAGCATTTATATGTGCCTCCTTGCATGGAAAGAATAGGGTCGAGAGGGAAAAGTTTGGGCGTGGTTTTAACCCCCATCTTACCTTTTTTTTTCTCGAATCTTCCAACCCCTACTCTTTTTTTGGTAAATACCACGTGAAGAGAAGAACAGAGTTAGAAGAAATAAGGGGGGGGGGGGGGGGCGCGAAATCGAAATCGGTGGGGGTTTTTGCTGCCAATGTTGACT</canonical>
            <polymorphic>GATTTCGATTTTATTTTTTGAAAAAAAGCACATTTTGAAACGAGCCGAGCCAAAAAAAAAACATTATATTTGTACAGATTGATGATGCTCTAAAAATGGGAAAAGGAAGAGGGATTGGCATCGAATATAAAGAAGAGATGAAACTTTGGCTTGGGTCTCTTTCTCTCTTTCACTTCTAATAGATGTATATGTACGTAAATTCGAGTAGGACTGTCAAGTAGGCCGTCGGTTGACGACCGGATTCGAACAGTAAAACGCCTGGCAGGAAATAATATAATAGTAGCCGGAACGCAGAGAGCGTGCAGGGGAGATTCGGTTAGGTCGCGGATGAATAGCCCACCCCTCCTCATGCCCTCATCATTTTCAACAATCGGAAAATTATAAGCCTAGATGAACCCGACGACATACACGGTTGAAGAAGTCTCTTGGCTTTGGCCAATCCATTGGCCAGTCTCGGAACTCGTCGAGCCACATGTCGTTGTCCTTCCAGAAACTGTCAYGACGGGTGAAGTCGGCATGACGGGTAGCCAATGTCATTTTTAGTTTAGTGGTTGAGCTTTGTTTTTTGAAGACTGAAAAATTATACAAATCATTGAGTGGATTTCGTAAGAAAAAAAAAATTAAAACGAGACAAAGCAACACCAACATATAGATATGAATAATTGCACTCTAAATGTACCTTAAAGAGAATGGCTTCCAAAAAACTCAAGACTGATAAACTAATAAAATACTAATAAATAACTCAAATTCAAAAACAGGAACACTCATATCTCAAAAGCATTTATATGTGCCTCCTTGCATGGAAAGAATAGGGTCGAGAGGGAAAAGTTTGGGCGTGGTTTTAACCCCCATCTTACCTTTTTTTTTCTCGAATCTTCCAACCCCTACTCTTTTTTTGGTAAATACCACGTGAAGAGAAGAACAGAGTTAGAAGAAATAAGGGGGGGGGGGGGGGGCGCGAAATCGAAATCGGTGGGGGTTTTTGCTGCCAATGTTGACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>348 283 201 124 26 18</canonical_bands>
                <polymorphic_bands>348 283 201 124 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACACGGTTGAAGAAGTCTCT</pcr_primer_p1>
		<pcr_primer_p2>ATCTATATGTTGGTGTTGCTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATACACGGTTGAAGAAGTCTCTTGGCTTTGGCCAATCCATTGGCCAGTCTCGGAACTCGTCGAGCCACATGTCGTTGTCCTTCCAGAAACTGTCATGACGGGTGAAGTCGGCATGACGGGTAGCCAATGTCATTTTTAGTTTAGTGGTTGAGCTTTGTTTTTTGAAGACTGAAAAATTATACAAATCATTGAGTGGATTTCGTAAGAAAAAAAAAATTAAAACGAGACAAAGCAACACCAACATATAGAT</canonical_amplicon>
		<polymorphic_amplicon>ATACACGGTTGAAGAAGTCTCTTGGCTTTGGCCAATCCATTGGCCAGTCTCGGAACTCGTCGAGCCACATGTCGTTGTCCTTCCAGAAACTGTCAYGACGGGTGAAGTCGGCATGACGGGTAGCCAATGTCATTTTTAGTTTAGTGGTTGAGCTTTGTTTTTTGAAGACTGAAAAATTATACAAATCATTGAGTGGATTTCGTAAGAAAAAAAAAATTAAAACGAGACAAAGCAACACCAACATATAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11731</snp_id>
        <super_contig>c005800991.Contig1</super_contig>
        <contig_pos>27246</contig_pos>
        <strand>+</strand>
        <context>CAATCGGAAA[A/C]TTATAAGCCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGAATAGCCCACCCCTCCTCATGCCCTCATCATTTTCAACAATCGGAAA</left_flank>
        <right_flank>TTATAAGCCTAGATGAACCCGACGACATACACGGTTGAAGAAGTCTCTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATTACTCTTGGCATGACCGCGTCCATGCGAGGCCAATCGGTTGGCCAATCCTTCCACCAGCTATCCACGTCACGGGAAAACTGTAAAAAAGGAAATATGAATCATTCTGAATCATCGGCTGATTTCGATTTTATTTTTTGAAAAAAAGCACATTTTGAAACGAGCCGAGCCAAAAAAAAAACATTATATTTGTACAGATTGATGATGCTCTAAAAATGGGAAAAGGAAGAGGGATTGGCATCGAATATAAAGAAGAGATGAAACTTTGGCTTGGGTCTCTTTCTCTCTTTCACTTCTAATAGATGTATATGTACGTAAATTCGAGTAGGACTGTCAAGTAGGCCGTCGGTTGACGACCGGATTCGAACAGTAAAACGCCTGGCAGGAAATAATATAATAGTAGCCGGAACGCAGAGAGCGTGCAGGGGAGATTCGGTTAGGTCGCGGATGAATAGCCCACCCCTCCTCATGCCCTCATCATTTTCAACAATCGGAAAATTATAAGCCTAGATGAACCCGACGACATACACGGTTGAAGAAGTCTCTTGGCTTTGGCCAATCCATTGGCCAGTCTCGGAACTCGTCGAGCCACATGTCGTTGTCCTTCCAGAAACTGTCATGACGGGTGAAGTCGGCATGACGGGTAGCCAATGTCATTTTTAGTTTAGTGGTTGAGCTTTGTTTTTTGAAGACTGAAAAATTATACAAATCATTGAGTGGATTTCGTAAGAAAAAAAAAATTAAAACGAGACAAAGCAACACCAACATATAGATATGAATAATTGCACTCTAAATGTACCTTAAAGAGAATGGCTTCCAAAAAACTCAAGACTGATAAACTAATAAAATACTAATAAATAACTCAAATTCAAAAACAGGAACACTCATATCTCAAAAGCATTTATATGTGCCTCCTTGCATGGAAAGAATAGGGTCGAGAGGGAAAAGTTTGGGCGTGGTTTTAACCCCCATCTTACCTTTTTTTTTCTCGAATCTTC</canonical>
            <polymorphic>GTATTACTCTTGGCATGACCGCGTCCATGCGAGGCCAATCGGTTGGCCAATCCTTCCACCAGCTATCCACGTCACGGGAAAACTGTAAAAAAGGAAATATGAATCATTCTGAATCATCGGCTGATTTCGATTTTATTTTTTGAAAAAAAGCACATTTTGAAACGAGCCGAGCCAAAAAAAAAACATTATATTTGTACAGATTGATGATGCTCTAAAAATGGGAAAAGGAAGAGGGATTGGCATCGAATATAAAGAAGAGATGAAACTTTGGCTTGGGTCTCTTTCTCTCTTTCACTTCTAATAGATGTATATGTACGTAAATTCGAGTAGGACTGTCAAGTAGGCCGTCGGTTGACGACCGGATTCGAACAGTAAAACGCCTGGCAGGAAATAATATAATAGTAGCCGGAACGCAGAGAGCGTGCAGGGGAGATTCGGTTAGGTCGCGGATGAATAGCCCACCCCTCCTCATGCCCTCATCATTTTCAACAATCGGAAAMTTATAAGCCTAGATGAACCCGACGACATACACGGTTGAAGAAGTCTCTTGGCTTTGGCCAATCCATTGGCCAGTCTCGGAACTCGTCGAGCCACATGTCGTTGTCCTTCCAGAAACTGTCATGACGGGTGAAGTCGGCATGACGGGTAGCCAATGTCATTTTTAGTTTAGTGGTTGAGCTTTGTTTTTTGAAGACTGAAAAATTATACAAATCATTGAGTGGATTTCGTAAGAAAAAAAAAATTAAAACGAGACAAAGCAACACCAACATATAGATATGAATAATTGCACTCTAAATGTACCTTAAAGAGAATGGCTTCCAAAAAACTCAAGACTGATAAACTAATAAAATACTAATAAATAACTCAAATTCAAAAACAGGAACACTCATATCTCAAAAGCATTTATATGTGCCTCCTTGCATGGAAAGAATAGGGTCGAGAGGGAAAAGTTTGGGCGTGGTTTTAACCCCCATCTTACCTTTTTTTTTCTCGAATCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>319 202 179 133 85 42 40</canonical_bands>
                <polymorphic_bands>381 319 133 85 42 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTACGTAAATTCGAGTAGGACT</pcr_primer_p1>
		<pcr_primer_p2>AAGCCAAGAGACTTCTTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TGTACGTAAATTCGAGTAGGACTGTCAAGTAGGCCGTCGGTTGACGACCGGATTCGAACAGTAAAACGCCTGGCAGGAAATAATATAATAGTAGCCGGAACGCAGAGAGCGTGCAGGGGAGATTCGGTTAGGTCGCGGATGAATAGCCCACCCCTCCTCATGCCCTCATCATTTTCAACAATCGGAAAATTATAAGCCTAGATGAACCCGACGACATACACGGTTGAAGAAGTCTCTTGGCTT</canonical_amplicon>
		<polymorphic_amplicon>TGTACGTAAATTCGAGTAGGACTGTCAAGTAGGCCGTCGGTTGACGACCGGATTCGAACAGTAAAACGCCTGGCAGGAAATAATATAATAGTAGCCGGAACGCAGAGAGCGTGCAGGGGAGATTCGGTTAGGTCGCGGATGAATAGCCCACCCCTCCTCATGCCCTCATCATTTTCAACAATCGGAAAMTTATAAGCCTAGATGAACCCGACGACATACACGGTTGAAGAAGTCTCTTGGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11732</snp_id>
        <super_contig>c005800991.Contig1</super_contig>
        <contig_pos>26976</contig_pos>
        <strand>+</strand>
        <context>GGGAAAAGGA[A/T]GAGGGATTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAACATTATATTTGTACAGATTGATGATGCTCTAAAAATGGGAAAAGGA</left_flank>
        <right_flank>GAGGGATTGGCATCGAATATAAAGAAGAGATGAAACTTTGGCTTGGGTCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCCTCAATCATCAGTGTGTCATCCAAAGTTTTCACTTGAATCTCTTCAGGACGGAATTGATAACAATCCATGTCAACGGCAAACTTGCGTTCGTCATTAACCACATTTGAGTTCACATCGATTCCCTCCTTGAAAATTGGCTCTGCCCATCTTGGATAGAGATTCATCCAATATGGATCGGTTCTCCAGTTACGATCCACACGGTCGAGTTGGGTAGAGAACTGAAATTATTATTCCTTGTATTTATTTATTCCTTTGTTGTATTCTAGGTATTACTCTTGGCATGACCGCGTCCATGCGAGGCCAATCGGTTGGCCAATCCTTCCACCAGCTATCCACGTCACGGGAAAACTGTAAAAAAGGAAATATGAATCATTCTGAATCATCGGCTGATTTCGATTTTATTTTTTGAAAAAAAGCACATTTTGAAACGAGCCGAGCCAAAAAAAAAACATTATATTTGTACAGATTGATGATGCTCTAAAAATGGGAAAAGGAAGAGGGATTGGCATCGAATATAAAGAAGAGATGAAACTTTGGCTTGGGTCTCTTTCTCTCTTTCACTTCTAATAGATGTATATGTACGTAAATTCGAGTAGGACTGTCAAGTAGGCCGTCGGTTGACGACCGGATTCGAACAGTAAAACGCCTGGCAGGAAATAATATAATAGTAGCCGGAACGCAGAGAGCGTGCAGGGGAGATTCGGTTAGGTCGCGGATGAATAGCCCACCCCTCCTCATGCCCTCATCATTTTCAACAATCGGAAAATTATAAGCCTAGATGAACCCGACGACATACACGGTTGAAGAAGTCTCTTGGCTTTGGCCAATCCATTGGCCAGTCTCGGAACTCGTCGAGCCACATGTCGTTGTCCTTCCAGAAACTGTCATGACGGGTGAAGTCGGCATGACGGGTAGCCAATGTCATTTTTAGTTTAGTGGTTGAGCTTTGTTTTTTGAAGACTGAAAAATTATACAAATCATTGAGTGGATTTCGTA</canonical>
            <polymorphic>CCCCTCAATCATCAGTGTGTCATCCAAAGTTTTCACTTGAATCTCTTCAGGACGGAATTGATAACAATCCATGTCAACGGCAAACTTGCGTTCGTCATTAACCACATTTGAGTTCACATCGATTCCCTCCTTGAAAATTGGCTCTGCCCATCTTGGATAGAGATTCATCCAATATGGATCGGTTCTCCAGTTACGATCCACACGGTCGAGTTGGGTAGAGAACTGAAATTATTATTCCTTGTATTTATTTATTCCTTTGTTGTATTCTAGGTATTACTCTTGGCATGACCGCGTCCATGCGAGGCCAATCGGTTGGCCAATCCTTCCACCAGCTATCCACGTCACGGGAAAACTGTAAAAAAGGAAATATGAATCATTCTGAATCATCGGCTGATTTCGATTTTATTTTTTGAAAAAAAGCACATTTTGAAACGAGCCGAGCCAAAAAAAAAACATTATATTTGTACAGATTGATGATGCTCTAAAAATGGGAAAAGGAWGAGGGATTGGCATCGAATATAAAGAAGAGATGAAACTTTGGCTTGGGTCTCTTTCTCTCTTTCACTTCTAATAGATGTATATGTACGTAAATTCGAGTAGGACTGTCAAGTAGGCCGTCGGTTGACGACCGGATTCGAACAGTAAAACGCCTGGCAGGAAATAATATAATAGTAGCCGGAACGCAGAGAGCGTGCAGGGGAGATTCGGTTAGGTCGCGGATGAATAGCCCACCCCTCCTCATGCCCTCATCATTTTCAACAATCGGAAAATTATAAGCCTAGATGAACCCGACGACATACACGGTTGAAGAAGTCTCTTGGCTTTGGCCAATCCATTGGCCAGTCTCGGAACTCGTCGAGCCACATGTCGTTGTCCTTCCAGAAACTGTCATGACGGGTGAAGTCGGCATGACGGGTAGCCAATGTCATTTTTAGTTTAGTGGTTGAGCTTTGTTTTTTGAAGACTGAAAAATTATACAAATCATTGAGTGGATTTCGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGGAAATATGAATCATTCTG</pcr_primer_p1>
		<pcr_primer_p2>TTGACAGTCCTACTCGAATTTAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAAGGAAATATGAATCATTCTGAATCATCGGCTGATTTCGATTTTATTTTTTGAAAAAAAGCACATTTTGAAACGAGCCGAGCCAAAAAAAAAACATTATATTTGTACAGATTGATGATGCTCTAAAAATGGGAAAAGGAAGAGGGATTGGCATCGAATATAAAGAAGAGATGAAACTTTGGCTTGGGTCTCTTTCTCTCTTTCACTTCTAATAGATGTATATGTACGTAAATTCGAGTAGGACTGTCAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAGGAAATATGAATCATTCTGAATCATCGGCTGATTTCGATTTTATTTTTTGAAAAAAAGCACATTTTGAAACGAGCCGAGCCAAAAAAAAAACATTATATTTGTACAGATTGATGATGCTCTAAAAATGGGAAAAGGAWGAGGGATTGGCATCGAATATAAAGAAGAGATGAAACTTTGGCTTGGGTCTCTTTCTCTCTTTCACTTCTAATAGATGTATATGTACGTAAATTCGAGTAGGACTGTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11733</snp_id>
        <super_contig>c005800991.Contig1</super_contig>
        <contig_pos>28382</contig_pos>
        <strand>+</strand>
        <context>GACGAGACTA[A/G]CCGCCAGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGATGATGATCAATGTGATATTTAATCACTGTGTAGGAACGACGAGACTA</left_flank>
        <right_flank>CCGCCAGAAAAAGAGATAGAGAACGATAACAAGGAATACGCCCTTCTCTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACACACTGTTATTTTGGTAGAGGGACCTGAGGTCGTATTGGGGATGGAATGGGGGAAAAAGGAAAAAAGGAGACGAAATAATCAAACATTACTGCCGGAAAATTTGGGAGTTGGAACAGAAGACGGAGAAGAAGAAGACATCTGTGTAATTAGAGGAAGGAAAAAAACAAGAGAGGAGGAAAGTTTCCTATTCAGAACTGTAATTTCGAAACTATCCCGATAGGAATGTAAGAATTTCTAAAGTCAAAACCAATATGAGCTCTGAATATGGTATGAGGGCACCGGCGGTGTGTTATATACCCATTCCTCCCAGCAAAAGAGAAGGGCGTTGGCCGGTCAAAGTTACCCTATTTCAGATGAGTCAGAACCAATTGAGAGAGAGGCAAAAGGCAGTTCCATTTTCTTTTTTTTCTCGATCCGCCCCAGTTGTCGTCGTCGGTCTCCCTTGGATGATGATCAATGTGATATTTAATCACTGTGTAGGAACGACGAGACTAACCGCCAGAAAAAGAGATAGAGAACGATAACAAGGAATACGCCCTTCTCTGGACCTCTTCTAATAGTTTCGAAATTGAGTTTCGACACTTCAAATATTTCAAAACCGGCTTCTTTTACGAACTAATTTTTTTTCTCGTTCCTTATGGTTTCTTTGAAAAATTCCTAAACGACGGTGACAATAGGGACACAACGCCTACAGAAGTTATTTTTTCATTGTGAACATGTGTCATATTATTTTCTGTTGTCATAAACGGTTTTGAAATATTTCCACTGGATGAATTTTTAAACCGGTAACTGAATTGGAAACTGAATTGGGTACATGCTGGAAAATCAGTGTGCTTTGTTCTCGAAGTAGAAGGGAAAATTGACTTTTTCCGTTCTCTTTCCGTTCCGATTCCATTCGTTTTGCCATAATTTTTTTTCAAAAGCACCATAAATCAATCTCAACCTCTGCACTCCGATTCGAAATTCTGAATAATAATTTGCCCACCACCAACGCA</canonical>
            <polymorphic>CAACACACTGTTATTTTGGTAGAGGGACCTGAGGTCGTATTGGGGATGGAATGGGGGAAAAAGGAAAAAAGGAGACGAAATAATCAAACATTACTGCCGGAAAATTTGGGAGTTGGAACAGAAGACGGAGAAGAAGAAGACATCTGTGTAATTAGAGGAAGGAAAAAAACAAGAGAGGAGGAAAGTTTCCTATTCAGAACTGTAATTTCGAAACTATCCCGATAGGAATGTAAGAATTTCTAAAGTCAAAACCAATATGAGCTCTGAATATGGTATGAGGGCACCGGCGGTGTGTTATATACCCATTCCTCCCAGCAAAAGAGAAGGGCGTTGGCCGGTCAAAGTTACCCTATTTCAGATGAGTCAGAACCAATTGAGAGAGAGGCAAAAGGCAGTTCCATTTTCTTTTTTTTCTCGATCCGCCCCAGTTGTCGTCGTCGGTCTCCCTTGGATGATGATCAATGTGATATTTAATCACTGTGTAGGAACGACGAGACTARCCGCCAGAAAAAGAGATAGAGAACGATAACAAGGAATACGCCCTTCTCTGGACCTCTTCTAATAGTTTCGAAATTGAGTTTCGACACTTCAAATATTTCAAAACCGGCTTCTTTTACGAACTAATTTTTTTTCTCGTTCCTTATGGTTTCTTTGAAAAATTCCTAAACGACGGTGACAATAGGGACACAACGCCTACAGAAGTTATTTTTTCATTGTGAACATGTGTCATATTATTTTCTGTTGTCATAAACGGTTTTGAAATATTTCCACTGGATGAATTTTTAAACCGGTAACTGAATTGGAAACTGAATTGGGTACATGCTGGAAAATCAGTGTGCTTTGTTCTCGAAGTAGAAGGGAAAATTGACTTTTTCCGTTCTCTTTCCGTTCCGATTCCATTCGTTTTGCCATAATTTTTTTTCAAAAGCACCATAAATCAATCTCAACCTCTGCACTCCGATTCGAAATTCTGAATAATAATTTGCCCACCACCAACGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAGTTACCCTATTTCAGATG</pcr_primer_p1>
		<pcr_primer_p2>CAATTTCGAAACTATTAGAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TCAAAGTTACCCTATTTCAGATGAGTCAGAACCAATTGAGAGAGAGGCAAAAGGCAGTTCCATTTTCTTTTTTTTCTCGATCCGCCCCAGTTGTCGTCGTCGGTCTCCCTTGGATGATGATCAATGTGATATTTAATCACTGTGTAGGAACGACGAGACTAACCGCCAGAAAAAGAGATAGAGAACGATAACAAGGAATACGCCCTTCTCTGGACCTCTTCTAATAGTTTCGAAATTG</canonical_amplicon>
		<polymorphic_amplicon>TCAAAGTTACCCTATTTCAGATGAGTCAGAACCAATTGAGAGAGAGGCAAAAGGCAGTTCCATTTTCTTTTTTTTCTCGATCCGCCCCAGTTGTCGTCGTCGGTCTCCCTTGGATGATGATCAATGTGATATTTAATCACTGTGTAGGAACGACGAGACTARCCGCCAGAAAAAGAGATAGAGAACGATAACAAGGAATACGCCCTTCTCTGGACCTCTTCTAATAGTTTCGAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11734</snp_id>
        <super_contig>c005800991.Contig1</super_contig>
        <contig_pos>28008</contig_pos>
        <strand>+</strand>
        <context>GAACAGAAGA[C/T]GGAGAAGAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAAATAATCAAACATTACTGCCGGAAAATTTGGGAGTTGGAACAGAAGA</left_flank>
        <right_flank>GGAGAAGAAGAAGACATCTGTGTAATTAGAGGAAGGAAAAAAACAAGAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAACATATAGATATGAATAATTGCACTCTAAATGTACCTTAAAGAGAATGGCTTCCAAAAAACTCAAGACTGATAAACTAATAAAATACTAATAAATAACTCAAATTCAAAAACAGGAACACTCATATCTCAAAAGCATTTATATGTGCCTCCTTGCATGGAAAGAATAGGGTCGAGAGGGAAAAGTTTGGGCGTGGTTTTAACCCCCATCTTACCTTTTTTTTTCTCGAATCTTCCAACCCCTACTCTTTTTTTGGTAAATACCACGTGAAGAGAAGAACAGAGTTAGAAGAAATAAGGGGGGGGGGGGGGGGCGCGAAATCGAAATCGGTGGGGGTTTTTGCTGCCAATGTTGACTGTGTGTTTCTCTGTCAACACACTGTTATTTTGGTAGAGGGACCTGAGGTCGTATTGGGGATGGAATGGGGGAAAAAGGAAAAAAGGAGACGAAATAATCAAACATTACTGCCGGAAAATTTGGGAGTTGGAACAGAAGACGGAGAAGAAGAAGACATCTGTGTAATTAGAGGAAGGAAAAAAACAAGAGAGGAGGAAAGTTTCCTATTCAGAACTGTAATTTCGAAACTATCCCGATAGGAATGTAAGAATTTCTAAAGTCAAAACCAATATGAGCTCTGAATATGGTATGAGGGCACCGGCGGTGTGTTATATACCCATTCCTCCCAGCAAAAGAGAAGGGCGTTGGCCGGTCAAAGTTACCCTATTTCAGATGAGTCAGAACCAATTGAGAGAGAGGCAAAAGGCAGTTCCATTTTCTTTTTTTTCTCGATCCGCCCCAGTTGTCGTCGTCGGTCTCCCTTGGATGATGATCAATGTGATATTTAATCACTGTGTAGGAACGACGAGACTAACCGCCAGAAAAAGAGATAGAGAACGATAACAAGGAATACGCCCTTCTCTGGACCTCTTCTAATAGTTTCGAAATTGAGTTTCGACACTTCAAATATTTCAAAACCGGCTTCTTTTACGAACTAATT</canonical>
            <polymorphic>ACCAACATATAGATATGAATAATTGCACTCTAAATGTACCTTAAAGAGAATGGCTTCCAAAAAACTCAAGACTGATAAACTAATAAAATACTAATAAATAACTCAAATTCAAAAACAGGAACACTCATATCTCAAAAGCATTTATATGTGCCTCCTTGCATGGAAAGAATAGGGTCGAGAGGGAAAAGTTTGGGCGTGGTTTTAACCCCCATCTTACCTTTTTTTTTCTCGAATCTTCCAACCCCTACTCTTTTTTTGGTAAATACCACGTGAAGAGAAGAACAGAGTTAGAAGAAATAAGGGGGGGGGGGGGGGGCGCGAAATCGAAATCGGTGGGGGTTTTTGCTGCCAATGTTGACTGTGTGTTTCTCTGTCAACACACTGTTATTTTGGTAGAGGGACCTGAGGTCGTATTGGGGATGGAATGGGGGAAAAAGGAAAAAAGGAGACGAAATAATCAAACATTACTGCCGGAAAATTTGGGAGTTGGAACAGAAGAYGGAGAAGAAGAAGACATCTGTGTAATTAGAGGAAGGAAAAAAACAAGAGAGGAGGAAAGTTTCCTATTCAGAACTGTAATTTCGAAACTATCCCGATAGGAATGTAAGAATTTCTAAAGTCAAAACCAATATGAGCTCTGAATATGGTATGAGGGCACCGGCGGTGTGTTATATACCCATTCCTCCCAGCAAAAGAGAAGGGCGTTGGCCGGTCAAAGTTACCCTATTTCAGATGAGTCAGAACCAATTGAGAGAGAGGCAAAAGGCAGTTCCATTTTCTTTTTTTTCTCGATCCGCCCCAGTTGTCGTCGTCGGTCTCCCTTGGATGATGATCAATGTGATATTTAATCACTGTGTAGGAACGACGAGACTAACCGCCAGAAAAAGAGATAGAGAACGATAACAAGGAATACGCCCTTCTCTGGACCTCTTCTAATAGTTTCGAAATTGAGTTTCGACACTTCAAATATTTCAAAACCGGCTTCTTTTACGAACTAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTGTGTTTCTCTGTCAACAC</pcr_primer_p1>
		<pcr_primer_p2>TTACATTCCTATCGGGATAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTGTGTGTTTCTCTGTCAACACACTGTTATTTTGGTAGAGGGACCTGAGGTCGTATTGGGGATGGAATGGGGGAAAAAGGAAAAAAGGAGACGAAATAATCAAACATTACTGCCGGAAAATTTGGGAGTTGGAACAGAAGACGGAGAAGAAGAAGACATCTGTGTAATTAGAGGAAGGAAAAAAACAAGAGAGGAGGAAAGTTTCCTATTCAGAACTGTAATTTCGAAACTATCCCGATAGGAATGTAA</canonical_amplicon>
		<polymorphic_amplicon>CTGTGTGTTTCTCTGTCAACACACTGTTATTTTGGTAGAGGGACCTGAGGTCGTATTGGGGATGGAATGGGGGAAAAAGGAAAAAAGGAGACGAAATAATCAAACATTACTGCCGGAAAATTTGGGAGTTGGAACAGAAGAYGGAGAAGAAGAAGACATCTGTGTAATTAGAGGAAGGAAAAAAACAAGAGAGGAGGAAAGTTTCCTATTCAGAACTGTAATTTCGAAACTATCCCGATAGGAATGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11735</snp_id>
        <super_contig>c005800991.Contig1</super_contig>
        <contig_pos>57376</contig_pos>
        <strand>+</strand>
        <context>TTCATCACTG[A/G]GGMTCCAGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACTTTTCCATATTTGGCATGCTTCGAAGATCCGTTCAGTTTCATCACTG</left_flank>
        <right_flank>GGCTCCAGGACGTCTGTCACTGGAGACATCATGGTGGTTCCACGCGTTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACACTAACCGATCTTTTTGCTCTCTTCAAACTTTGAGACTGATTATCCTGGCTCTCTTCTTTCTCCAATCTTTTGTAACTTCGTTTCTTCAGCTTTTGAATGGATTTCGTGTTGTCCTGAAAATAGAAGTTGTCATTAGTATCAAAAATGCACATTATTTTTCAATGGAATTCTCAAAAGTTACCAAAATTATCAGATTCTCAATCCACTCACCTTGTTCTGATTCTTTTGAATCTTTTTTAAGCTTTCAGTTTTGTTGTCAGTGTCCGAGAAACCAGTAAATGACGAATCTTTATTTTGGACATTTCCGGAATTCTGTTTCAAAGTTTTCAAATCTGGAAGTTCCCGGATCTACTCACCTTTTTCTTATTCTTTCGAGTATCTTCAAAGCTTCCAGTTCTGTTCTCAGTGTCCGAGGAACAAGTAGAGGGTGATTCCTGATTTTGGACTTTTCCATATTTGGCATGCTTCGAAGATCCGTTCAGTTTCATCACTGAGGCTCCAGGACGTCTGTCACTGGAGACATCATGGTGGTTCCACGCGTTGGACGGTGAGTTTTTCGTGATGACCTTAAAAAAATGAATGAATTCCTAAATTTTTTTGTAAGAATATTGAAAACAAGACGCTTTTTTGACAATTTCGAAAACTGGAATTCATTTGAAAGTTCTTAAAAAGAGATCTTGCCCAAGAGTTTTTGAGGTGTGTATGTTTATATCTAAGAGCTAGCGGATGCCAAAACATGGGGAAGAAAAAAGAAACATTTTTGAATGAAAAAAGTACAGTATCCTAAAAAGAACACCATCCCAAAAGGTACAGTTACCCAAAAAGTACAGTTTTCCCAAGAGTACAGTACCGCTAAAATTACAATACCCATAAAAACACAGTATCCCCAAAAGTACAGTATACCTAAAAATTACAGTAGCCCTAAAAGAACAGTATCTTTGAAACAATAGTATTAAAAGAGTACGGTAACTCAAAAAGTGCAGTAATTCTAAAC</canonical>
            <polymorphic>AAAACACTAACCGATCTTTTTGCTCTCTTCAAACTTTGAGACTGATTATCCTGGCTCTCTTCTTTCTCCAATCTTTTGTAACTTCGTTTCTTCAGCTTTTGAATGGATTTCGTGTTGTCCTGAAAATAGAAGTTGTCATTAGTATCAAAAATGCACATTATTTTTCAATGGAATTCTCAAAAGTTACCAAAATTATCAGATTCTCAATCCACTCACCTTGTTCTGATTCTTTTGAATCTTTTTTAAGCTTTCAGTTTTGTTGTCAGTGTCCGAGAAACCAGTAAATGACGAATCTTTATTTTGGACATTTCCGGAATTCTGTTTCAAAGTTTTCAAATCTGGAAGTTCCCGGATCTACTCACCTTTTTCTTATTCTTTCGAGTATCTTCAAAGCTTCCAGTTCTGTTCTCAGTGTCCGAGGAACAAGTAGAGGGTGATTCCTGATTTTGGACTTTTCCATATTTGGCATGCTTCGAAGATCCGTTCAGTTTCATCACTGRGGCTCCAGGACGTCTGTCACTGGAGACATCATGGTGGTTCCACGCGTTGGACGGTGAGTTTTTCGTGATGACCTTAAAAAAATGAATGAATTCCTAAATTTTTTTGTAAGAATATTGAAAACAAGACGCTTTTTTGACAATTTCGAAAACTGGAATTCATTTGAAAGTTCTTAAAAAGAGATCTTGCCCAAGAGTTTTTGAGGTGTGTATGTTTATATCTAAGAGCTAGCGGATGCCAAAACATGGGGAAGAAAAAAGAAACATTTTTGAATGAAAAAAGTACAGTATCCTAAAAAGAACACCATCCCAAAAGGTACAGTTACCCAAAAAGTACAGTTTTCCCAAGAGTACAGTACCGCTAAAATTACAATACCCATAAAAACACAGTATCCCCAAAAGTACAGTATACCTAAAAATTACAGTAGCCCTAAAAGAACAGTATCTTTGAAACAATAGTATTAAAAGAGTACGGTAACTCAAAAAGTGCAGTAATTCTAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>408 281 222 89</canonical_bands>
                <polymorphic_bands>408 311 281</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTATCTTCAAAGCTTCCAGTT</pcr_primer_p1>
		<pcr_primer_p2>GCGTCTTGTTTTCAATATTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGTATCTTCAAAGCTTCCAGTTCTGTTCTCAGTGTCCGAGGAACAAGTAGAGGGTGATTCCTGATTTTGGACTTTTCCATATTTGGCATGCTTCGAAGATCCGTTCAGTTTCATCACTGAGGCTCCAGGACGTCTGTCACTGGAGACATCATGGTGGTTCCACGCGTTGGACGGTGAGTTTTTCGTGATGACCTTAAAAAAATGAATGAATTCCTAAATTTTTTTGTAAGAATATTGAAAACAAGACGC</canonical_amplicon>
		<polymorphic_amplicon>GAGTATCTTCAAAGCTTCCAGTTCTGTTCTCAGTGTCCGAGGAACAAGTAGAGGGTGATTCCTGATTTTGGACTTTTCCATATTTGGCATGCTTCGAAGATCCGTTCAGTTTCATCACTGRGGCTCCAGGACGTCTGTCACTGGAGACATCATGGTGGTTCCACGCGTTGGACGGTGAGTTTTTCGTGATGACCTTAAAAAAATGAATGAATTCCTAAATTTTTTTGTAAGAATATTGAAAACAAGACGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11736</snp_id>
        <super_contig>c005800991.Contig1</super_contig>
        <contig_pos>57379</contig_pos>
        <strand>+</strand>
        <context>ATCACTGRGG[A/C]TCCAGGACGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTCCATATTTGGCATGCTTCGAAGATCCGTTCAGTTTCATCACTGAGG</left_flank>
        <right_flank>TCCAGGACGTCTGTCACTGGAGACATCATGGTGGTTCCACGCGTTGGACG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACTAACCGATCTTTTTGCTCTCTTCAAACTTTGAGACTGATTATCCTGGCTCTCTTCTTTCTCCAATCTTTTGTAACTTCGTTTCTTCAGCTTTTGAATGGATTTCGTGTTGTCCTGAAAATAGAAGTTGTCATTAGTATCAAAAATGCACATTATTTTTCAATGGAATTCTCAAAAGTTACCAAAATTATCAGATTCTCAATCCACTCACCTTGTTCTGATTCTTTTGAATCTTTTTTAAGCTTTCAGTTTTGTTGTCAGTGTCCGAGAAACCAGTAAATGACGAATCTTTATTTTGGACATTTCCGGAATTCTGTTTCAAAGTTTTCAAATCTGGAAGTTCCCGGATCTACTCACCTTTTTCTTATTCTTTCGAGTATCTTCAAAGCTTCCAGTTCTGTTCTCAGTGTCCGAGGAACAAGTAGAGGGTGATTCCTGATTTTGGACTTTTCCATATTTGGCATGCTTCGAAGATCCGTTCAGTTTCATCACTGAGGCTCCAGGACGTCTGTCACTGGAGACATCATGGTGGTTCCACGCGTTGGACGGTGAGTTTTTCGTGATGACCTTAAAAAAATGAATGAATTCCTAAATTTTTTTGTAAGAATATTGAAAACAAGACGCTTTTTTGACAATTTCGAAAACTGGAATTCATTTGAAAGTTCTTAAAAAGAGATCTTGCCCAAGAGTTTTTGAGGTGTGTATGTTTATATCTAAGAGCTAGCGGATGCCAAAACATGGGGAAGAAAAAAGAAACATTTTTGAATGAAAAAAGTACAGTATCCTAAAAAGAACACCATCCCAAAAGGTACAGTTACCCAAAAAGTACAGTTTTCCCAAGAGTACAGTACCGCTAAAATTACAATACCCATAAAAACACAGTATCCCCAAAAGTACAGTATACCTAAAAATTACAGTAGCCCTAAAAGAACAGTATCTTTGAAACAATAGTATTAAAAGAGTACGGTAACTCAAAAAGTGCAGTAATTCTAAACGTA</canonical>
            <polymorphic>ACACTAACCGATCTTTTTGCTCTCTTCAAACTTTGAGACTGATTATCCTGGCTCTCTTCTTTCTCCAATCTTTTGTAACTTCGTTTCTTCAGCTTTTGAATGGATTTCGTGTTGTCCTGAAAATAGAAGTTGTCATTAGTATCAAAAATGCACATTATTTTTCAATGGAATTCTCAAAAGTTACCAAAATTATCAGATTCTCAATCCACTCACCTTGTTCTGATTCTTTTGAATCTTTTTTAAGCTTTCAGTTTTGTTGTCAGTGTCCGAGAAACCAGTAAATGACGAATCTTTATTTTGGACATTTCCGGAATTCTGTTTCAAAGTTTTCAAATCTGGAAGTTCCCGGATCTACTCACCTTTTTCTTATTCTTTCGAGTATCTTCAAAGCTTCCAGTTCTGTTCTCAGTGTCCGAGGAACAAGTAGAGGGTGATTCCTGATTTTGGACTTTTCCATATTTGGCATGCTTCGAAGATCCGTTCAGTTTCATCACTGAGGMTCCAGGACGTCTGTCACTGGAGACATCATGGTGGTTCCACGCGTTGGACGGTGAGTTTTTCGTGATGACCTTAAAAAAATGAATGAATTCCTAAATTTTTTTGTAAGAATATTGAAAACAAGACGCTTTTTTGACAATTTCGAAAACTGGAATTCATTTGAAAGTTCTTAAAAAGAGATCTTGCCCAAGAGTTTTTGAGGTGTGTATGTTTATATCTAAGAGCTAGCGGATGCCAAAACATGGGGAAGAAAAAAGAAACATTTTTGAATGAAAAAAGTACAGTATCCTAAAAAGAACACCATCCCAAAAGGTACAGTTACCCAAAAAGTACAGTTTTCCCAAGAGTACAGTACCGCTAAAATTACAATACCCATAAAAACACAGTATCCCCAAAAGTACAGTATACCTAAAAATTACAGTAGCCCTAAAAGAACAGTATCTTTGAAACAATAGTATTAAAAGAGTACGGTAACTCAAAAAGTGCAGTAATTCTAAACGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>223 200 152 146 109 78 51 41</canonical_bands>
                <polymorphic_bands>332 200 152 146 78 51 41</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTATCTTCAAAGCTTCCAGTT</pcr_primer_p1>
		<pcr_primer_p2>GCGTCTTGTTTTCAATATTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGTATCTTCAAAGCTTCCAGTTCTGTTCTCAGTGTCCGAGGAACAAGTAGAGGGTGATTCCTGATTTTGGACTTTTCCATATTTGGCATGCTTCGAAGATCCGTTCAGTTTCATCACTGAGGCTCCAGGACGTCTGTCACTGGAGACATCATGGTGGTTCCACGCGTTGGACGGTGAGTTTTTCGTGATGACCTTAAAAAAATGAATGAATTCCTAAATTTTTTTGTAAGAATATTGAAAACAAGACGC</canonical_amplicon>
		<polymorphic_amplicon>GAGTATCTTCAAAGCTTCCAGTTCTGTTCTCAGTGTCCGAGGAACAAGTAGAGGGTGATTCCTGATTTTGGACTTTTCCATATTTGGCATGCTTCGAAGATCCGTTCAGTTTCATCACTGAGGMTCCAGGACGTCTGTCACTGGAGACATCATGGTGGTTCCACGCGTTGGACGGTGAGTTTTTCGTGATGACCTTAAAAAAATGAATGAATTCCTAAATTTTTTTGTAAGAATATTGAAAACAAGACGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11737</snp_id>
        <super_contig>c005800991.Contig1</super_contig>
        <contig_pos>125722</contig_pos>
        <strand>+</strand>
        <context>CCAGTCACTM[A/C]AAATGACAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGATTCGCCATCAACTCTGTGTTTTTTTGAGGACCAACACCAGTCACTC</left_flank>
        <right_flank>AAATGACAAAAGTCATTTATCAATTTGAAGCTCTGCGTTAACCGACGCCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCCACCTTTGTAGACAGGATTCTAGTTTGTAAGTTTGTAAGTATACCGTGTAACTTCGTTGTTAGTGTGTAGACTATATTGTCAACTAATGAAATACTGGTGATATTAGAGAAAAATATGTCAGGAAAATCCTGAAGTTTTTTGGGGTTCACATCTGACATCCATTTCATATTCGTCGATTGAAGTTTTGCAACCGCGTGGCTTATTCGGTAGCGGCGTCTTATCTGTCCTGCTTTTTTACACGTTCAACTCCGGAAATTTTTTATAGCCCATTATGGGAAAACATTTAAATTTTCTTGCCCGTGCTTACATTACTTTTCAGATTTATTCCAGTTTTTTCACAAACGTTAACTTTGAAAACTCTTCTAGAACGCACAATAAAATACTACTCATTACTCAGAAGAAACCAATCGAATCTCCATTTTCTCATCGTGCCGTGAGAAAACGTTGATTCGCCATCAACTCTGTGTTTTTTTGAGGACCAACACCAGTCACTCCAAATGACAAAAGTCATTTATCAATTTGAAGCTCTGCGTTAACCGACGCCAATCATACCCTCCTCCAAGACCCCAAAAAATGTGCTGCAATTGTTTCGGCAGAAAAAAGAAAGATGTAATAGATGGAGCCGAATCAAAGTGAGTGTTCGAGGGCATTGGTGAAAGAAAGTGAGTAGCCTCCCCGGAATCATCCCCAGTCGTCGCAGCATATCTTTTTGCCTCCTTTTCACTCACTTCTTCTTTTTCTCCTTGAGGTGATCTGTTGTAATCTCAACTCTTGTGCTCTTCCCTATCTTCTTTCAAACAATCCATAAGTCTATTCCTTGTTCTTCTCTCTGATTTTATATCTTTCTTTTCTTTTGCTCTCCCCTCTCGTTTTATATCGTGAGTATTGGGGTCCTCGGATTACCTGTCCCATCATCCGAGAAGTAAGTTGTCTTCTTGCAATCAATCTCTTTTTTTCTACTTATTTTCGTCTCTGATTATTTTTTCCATCCAAAC</canonical>
            <polymorphic>GAGCCACCTTTGTAGACAGGATTCTAGTTTGTAAGTTTGTAAGTATACCGTGTAACTTCGTTGTTAGTGTGTAGACTATATTGTCAACTAATGAAATACTGGTGATATTAGAGAAAAATATGTCAGGAAAATCCTGAAGTTTTTTGGGGTTCACATCTGACATCCATTTCATATTCGTCGATTGAAGTTTTGCAACCGCGTGGCTTATTCGGTAGCGGCGTCTTATCTGTCCTGCTTTTTTACACGTTCAACTCCGGAAATTTTTTATAGCCCATTATGGGAAAACATTTAAATTTTCTTGCCCGTGCTTACATTACTTTTCAGATTTATTCCAGTTTTTTCACAAACGTTAACTTTGAAAACTCTTCTAGAACGCACAATAAAATACTACTCATTACTCAGAAGAAACCAATCGAATCTCCATTTTCTCATCGTGCCGTGAGAAAACGTTGATTCGCCATCAACTCTGTGTTTTTTTGAGGACCAACACCAGTCACTCMAAATGACAAAAGTCATTTATCAATTTGAAGCTCTGCGTTAACCGACGCCAATCATACCCTCCTCCAAGACCCCAAAAAATGTGCTGCAATTGTTTCGGCAGAAAAAAGAAAGATGTAATAGATGGAGCCGAATCAAAGTGAGTGTTCGAGGGCATTGGTGAAAGAAAGTGAGTAGCCTCCCCGGAATCATCCCCAGTCGTCGCAGCATATCTTTTTGCCTCCTTTTCACTCACTTCTTCTTTTTCTCCTTGAGGTGATCTGTTGTAATCTCAACTCTTGTGCTCTTCCCTATCTTCTTTCAAACAATCCATAAGTCTATTCCTTGTTCTTCTCTCTGATTTTATATCTTTCTTTTCTTTTGCTCTCCCCTCTCGTTTTATATCGTGAGTATTGGGGTCCTCGGATTACCTGTCCCATCATCCGAGAAGTAAGTTGTCTTCTTGCAATCAATCTCTTTTTTTCTACTTATTTTCGTCTCTGATTATTTTTTCCATCCAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTACTCAGAAGAAACCAATC</pcr_primer_p1>
		<pcr_primer_p2>GGCTCCATCTATTACATCTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TCATTACTCAGAAGAAACCAATCGAATCTCCATTTTCTCATCGTGCCGTGAGAAAACGTTGATTCGCCATCAACTCTGTGTTTTTTTGAGGACCAACACCAGTCACTCCAAATGACAAAAGTCATTTATCAATTTGAAGCTCTGCGTTAACCGACGCCAATCATACCCTCCTCCAAGACCCCAAAAAATGTGCTGCAATTGTTTCGGCAGAAAAAAGAAAGATGTAATAGATGGAGCC</canonical_amplicon>
		<polymorphic_amplicon>TCATTACTCAGAAGAAACCAATCGAATCTCCATTTTCTCATCGTGCCGTGAGAAAACGTTGATTCGCCATCAACTCTGTGTTTTTTTGAGGACCAACACCAGTCACTCMAAATGACAAAAGTCATTTATCAATTTGAAGCTCTGCGTTAACCGACGCCAATCATACCCTCCTCCAAGACCCCAAAAAATGTGCTGCAATTGTTTCGGCAGAAAAAAGAAAGATGTAATAGATGGAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11738</snp_id>
        <super_contig>c005800991.Contig1</super_contig>
        <contig_pos>125721</contig_pos>
        <strand>+</strand>
        <context>ACCAGTCACT[A/C]MAAATGACAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTGATTCGCCATCAACTCTGTGTTTTTTTGAGGACCAACACCAGTCACT</left_flank>
        <right_flank>CAAATGACAAAAGTCATTTATCAATTTGAAGCTCTGCGTTAACCGACGCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGCCACCTTTGTAGACAGGATTCTAGTTTGTAAGTTTGTAAGTATACCGTGTAACTTCGTTGTTAGTGTGTAGACTATATTGTCAACTAATGAAATACTGGTGATATTAGAGAAAAATATGTCAGGAAAATCCTGAAGTTTTTTGGGGTTCACATCTGACATCCATTTCATATTCGTCGATTGAAGTTTTGCAACCGCGTGGCTTATTCGGTAGCGGCGTCTTATCTGTCCTGCTTTTTTACACGTTCAACTCCGGAAATTTTTTATAGCCCATTATGGGAAAACATTTAAATTTTCTTGCCCGTGCTTACATTACTTTTCAGATTTATTCCAGTTTTTTCACAAACGTTAACTTTGAAAACTCTTCTAGAACGCACAATAAAATACTACTCATTACTCAGAAGAAACCAATCGAATCTCCATTTTCTCATCGTGCCGTGAGAAAACGTTGATTCGCCATCAACTCTGTGTTTTTTTGAGGACCAACACCAGTCACTCCAAATGACAAAAGTCATTTATCAATTTGAAGCTCTGCGTTAACCGACGCCAATCATACCCTCCTCCAAGACCCCAAAAAATGTGCTGCAATTGTTTCGGCAGAAAAAAGAAAGATGTAATAGATGGAGCCGAATCAAAGTGAGTGTTCGAGGGCATTGGTGAAAGAAAGTGAGTAGCCTCCCCGGAATCATCCCCAGTCGTCGCAGCATATCTTTTTGCCTCCTTTTCACTCACTTCTTCTTTTTCTCCTTGAGGTGATCTGTTGTAATCTCAACTCTTGTGCTCTTCCCTATCTTCTTTCAAACAATCCATAAGTCTATTCCTTGTTCTTCTCTCTGATTTTATATCTTTCTTTTCTTTTGCTCTCCCCTCTCGTTTTATATCGTGAGTATTGGGGTCCTCGGATTACCTGTCCCATCATCCGAGAAGTAAGTTGTCTTCTTGCAATCAATCTCTTTTTTTCTACTTATTTTCGTCTCTGATTATTTTTTCCATCCAAA</canonical>
            <polymorphic>TGAGCCACCTTTGTAGACAGGATTCTAGTTTGTAAGTTTGTAAGTATACCGTGTAACTTCGTTGTTAGTGTGTAGACTATATTGTCAACTAATGAAATACTGGTGATATTAGAGAAAAATATGTCAGGAAAATCCTGAAGTTTTTTGGGGTTCACATCTGACATCCATTTCATATTCGTCGATTGAAGTTTTGCAACCGCGTGGCTTATTCGGTAGCGGCGTCTTATCTGTCCTGCTTTTTTACACGTTCAACTCCGGAAATTTTTTATAGCCCATTATGGGAAAACATTTAAATTTTCTTGCCCGTGCTTACATTACTTTTCAGATTTATTCCAGTTTTTTCACAAACGTTAACTTTGAAAACTCTTCTAGAACGCACAATAAAATACTACTCATTACTCAGAAGAAACCAATCGAATCTCCATTTTCTCATCGTGCCGTGAGAAAACGTTGATTCGCCATCAACTCTGTGTTTTTTTGAGGACCAACACCAGTCACTMCAAATGACAAAAGTCATTTATCAATTTGAAGCTCTGCGTTAACCGACGCCAATCATACCCTCCTCCAAGACCCCAAAAAATGTGCTGCAATTGTTTCGGCAGAAAAAAGAAAGATGTAATAGATGGAGCCGAATCAAAGTGAGTGTTCGAGGGCATTGGTGAAAGAAAGTGAGTAGCCTCCCCGGAATCATCCCCAGTCGTCGCAGCATATCTTTTTGCCTCCTTTTCACTCACTTCTTCTTTTTCTCCTTGAGGTGATCTGTTGTAATCTCAACTCTTGTGCTCTTCCCTATCTTCTTTCAAACAATCCATAAGTCTATTCCTTGTTCTTCTCTCTGATTTTATATCTTTCTTTTCTTTTGCTCTCCCCTCTCGTTTTATATCGTGAGTATTGGGGTCCTCGGATTACCTGTCCCATCATCCGAGAAGTAAGTTGTCTTCTTGCAATCAATCTCTTTTTTTCTACTTATTTTCGTCTCTGATTATTTTTTCCATCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTACTCAGAAGAAACCAATC</pcr_primer_p1>
		<pcr_primer_p2>GGCTCCATCTATTACATCTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TCATTACTCAGAAGAAACCAATCGAATCTCCATTTTCTCATCGTGCCGTGAGAAAACGTTGATTCGCCATCAACTCTGTGTTTTTTTGAGGACCAACACCAGTCACTCCAAATGACAAAAGTCATTTATCAATTTGAAGCTCTGCGTTAACCGACGCCAATCATACCCTCCTCCAAGACCCCAAAAAATGTGCTGCAATTGTTTCGGCAGAAAAAAGAAAGATGTAATAGATGGAGCC</canonical_amplicon>
		<polymorphic_amplicon>TCATTACTCAGAAGAAACCAATCGAATCTCCATTTTCTCATCGTGCCGTGAGAAAACGTTGATTCGCCATCAACTCTGTGTTTTTTTGAGGACCAACACCAGTCACTMCAAATGACAAAAGTCATTTATCAATTTGAAGCTCTGCGTTAACCGACGCCAATCATACCCTCCTCCAAGACCCCAAAAAATGTGCTGCAATTGTTTCGGCAGAAAAAAGAAAGATGTAATAGATGGAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11739</snp_id>
        <super_contig>c005800991.Contig1</super_contig>
        <contig_pos>196407</contig_pos>
        <strand>+</strand>
        <context>TTCAATTATT[C/T]TTCTTATTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACGGTTTCTCTCTCTCCCGTTTTTTCATCAAACGCACAATTCAATTATT</left_flank>
        <right_flank>TTCTTATTAAAATAATCCTCTCATGCACATATAGGGATGTGCAGAAATAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGCAAGTTCAAAAGTTGGGAATAGGCAACAAAGAGATACACACACTCTATTTTCAGCTGCTGCTGCTCCTCTTGAAGCACAAGACATCAAACGCTTTCAATGTTTCATTCTGTGTTTCATTTTTTCTCGACAGAGCGATCATCAACATGAAGTTTCTTGTAAAACCTCTTCTTTTGGCTAACTTCTGAGTACCTCCCACACTTTCCCATGTTGTTTCGGAGACACATGCTGTTGCTGCTTCTGTTGTTGATGATCTTTGATATGCTTCCGGTGAGCTCCGTGGTTCAAGTTGTTACTCTAATGCGTTGTTCTATTCTGAGTTTTCCGTCTGGCACGTGCTCGATAAAACTTCAGAATATTTCCGATCTCAGATTATAGAATTCCAGCTAGGTGTGACCAAGTCTGATGAACACTTAATTTCCAGTTAGATAAAATCTTACAGAGTATGACGGTTTCTCTCTCTCCCGTTTTTTCATCAAACGCACAATTCAATTATTCTTCTTATTAAAATAATCCTCTCATGCACATATAGGGATGTGCAGAAATATAAATGGATGGAATTCTTTTTTCGGTTCTTTCTCGTTCCTTTCGTATATTCCAAACATTAACTTTTACCCTCTTCCTACTTTTCTTTCTTCTTTTCCTCTTCCAATGTTTATTCCGCCCTGCGCCAGGTTTGGAAGCGAGAGTCTCGGCAGTGGTACTTGCTTCTTGCTCCGACTCCACCCCTCACCTCATTCAGTTGTGATTTCGCAGCGCCACGCAACACTCCGTCTACTCTCGCTTCGAACCTTTAACGGTGTCCATCAATTCGCCGACCGCCCTCCCATCTCGGGTTCATGTCTTGAGAGAAAAAAAATGAATAGTGTACACACACCGTTTCTGTCCTCTTCTAATGGTGATGTGTTCTTTCCCATCTTCTTTCCCACTTTTCATTCTTTTCTTCTTTTTTTTCTCAACAAAAGTTACGGTTCAGATACTCCTTTCTCTCTTTTTCT</canonical>
            <polymorphic>GAAGCAAGTTCAAAAGTTGGGAATAGGCAACAAAGAGATACACACACTCTATTTTCAGCTGCTGCTGCTCCTCTTGAAGCACAAGACATCAAACGCTTTCAATGTTTCATTCTGTGTTTCATTTTTTCTCGACAGAGCGATCATCAACATGAAGTTTCTTGTAAAACCTCTTCTTTTGGCTAACTTCTGAGTACCTCCCACACTTTCCCATGTTGTTTCGGAGACACATGCTGTTGCTGCTTCTGTTGTTGATGATCTTTGATATGCTTCCGGTGAGCTCCGTGGTTCAAGTTGTTACTCTAATGCGTTGTTCTATTCTGAGTTTTCCGTCTGGCACGTGCTCGATAAAACTTCAGAATATTTCCGATCTCAGATTATAGAATTCCAGCTAGGTGTGACCAAGTCTGATGAACACTTAATTTCCAGTTAGATAAAATCTTACAGAGTATGACGGTTTCTCTCTCTCCCGTTTTTTCATCAAACGCACAATTCAATTATTYTTCTTATTAAAATAATCCTCTCATGCACATATAGGGATGTGCAGAAATATAAATGGATGGAATTCTTTTTTCGGTTCTTTCTCGTTCCTTTCGTATATTCCAAACATTAACTTTTACCCTCTTCCTACTTTTCTTTCTTCTTTTCCTCTTCCAATGTTTATTCCGCCCTGCGCCAGGTTTGGAAGCGAGAGTCTCGGCAGTGGTACTTGCTTCTTGCTCCGACTCCACCCCTCACCTCATTCAGTTGTGATTTCGCAGCGCCACGCAACACTCCGTCTACTCTCGCTTCGAACCTTTAACGGTGTCCATCAATTCGCCGACCGCCCTCCCATCTCGGGTTCATGTCTTGAGAGAAAAAAAATGAATAGTGTACACACACCGTTTCTGTCCTCTTCTAATGGTGATGTGTTCTTTCCCATCTTCTTTCCCACTTTTCATTCTTTTCTTCTTTTTTTTCTCAACAAAAGTTACGGTTCAGATACTCCTTTCTCTCTTTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGATGAACACTTAATTTCCAGT</pcr_primer_p1>
		<pcr_primer_p2>GAAGAGGAAAAGAAGAAAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTGATGAACACTTAATTTCCAGTTAGATAAAATCTTACAGAGTATGACGGTTTCTCTCTCTCCCGTTTTTTCATCAAACGCACAATTCAATTATTCTTCTTATTAAAATAATCCTCTCATGCACATATAGGGATGTGCAGAAATATAAATGGATGGAATTCTTTTTTCGGTTCTTTCTCGTTCCTTTCGTATATTCCAAACATTAACTTTTACCCTCTTCCTACTTTTCTTTCTTCTTTTCCTCTTC</canonical_amplicon>
		<polymorphic_amplicon>CTGATGAACACTTAATTTCCAGTTAGATAAAATCTTACAGAGTATGACGGTTTCTCTCTCTCCCGTTTTTTCATCAAACGCACAATTCAATTATTYTTCTTATTAAAATAATCCTCTCATGCACATATAGGGATGTGCAGAAATATAAATGGATGGAATTCTTTTTTCGGTTCTTTCTCGTTCCTTTCGTATATTCCAAACATTAACTTTTACCCTCTTCCTACTTTTCTTTCTTCTTTTCCTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11740</snp_id>
        <super_contig>c005800991.Contig1</super_contig>
        <contig_pos>196699</contig_pos>
        <strand>+</strand>
        <context>CTCGCTTCGA[A/G]CCTTTAACGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGTTGTGATTTCGCAGCGCCACGCAACACTCCGTCTACTCTCGCTTCGA</left_flank>
        <right_flank>CCTTTAACGGTGTCCATCAATTCGCCGACCGCCCTCCCATCTCGGGTTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTACTCTAATGCGTTGTTCTATTCTGAGTTTTCCGTCTGGCACGTGCTCGATAAAACTTCAGAATATTTCCGATCTCAGATTATAGAATTCCAGCTAGGTGTGACCAAGTCTGATGAACACTTAATTTCCAGTTAGATAAAATCTTACAGAGTATGACGGTTTCTCTCTCTCCCGTTTTTTCATCAAACGCACAATTCAATTATTCTTCTTATTAAAATAATCCTCTCATGCACATATAGGGATGTGCAGAAATATAAATGGATGGAATTCTTTTTTCGGTTCTTTCTCGTTCCTTTCGTATATTCCAAACATTAACTTTTACCCTCTTCCTACTTTTCTTTCTTCTTTTCCTCTTCCAATGTTTATTCCGCCCTGCGCCAGGTTTGGAAGCGAGAGTCTCGGCAGTGGTACTTGCTTCTTGCTCCGACTCCACCCCTCACCTCATTCAGTTGTGATTTCGCAGCGCCACGCAACACTCCGTCTACTCTCGCTTCGAACCTTTAACGGTGTCCATCAATTCGCCGACCGCCCTCCCATCTCGGGTTCATGTCTTGAGAGAAAAAAAATGAATAGTGTACACACACCGTTTCTGTCCTCTTCTAATGGTGATGTGTTCTTTCCCATCTTCTTTCCCACTTTTCATTCTTTTCTTCTTTTTTTTCTCAACAAAAGTTACGGTTCAGATACTCCTTTCTCTCTTTTTCTCTCTCATTCTTTTTCTTCAATTAATTATTTTCCTTCCTAACTGTTTCTTAACCCCAGTTACCCATCATGCAACATCTTTTCGCCAAGTACGAGAAAAGGCTCAAGTTGAACCATATCACTCGGAAGACGTGGGAAGAGGAGCAAACCTTCTCGCGCGTCGGAAAAGCTGTGTTCAAAGTTCCAAGACCACCCAAGCATAAGAAGACATTCCGCTGGGAAATCCGTGAGTTCTTTTTTTGGGTTGTGGCTCCATTTAACTTTGCTTCCGCCGCACGAAAACTTCTTTTCTAGA</canonical>
            <polymorphic>TGTTACTCTAATGCGTTGTTCTATTCTGAGTTTTCCGTCTGGCACGTGCTCGATAAAACTTCAGAATATTTCCGATCTCAGATTATAGAATTCCAGCTAGGTGTGACCAAGTCTGATGAACACTTAATTTCCAGTTAGATAAAATCTTACAGAGTATGACGGTTTCTCTCTCTCCCGTTTTTTCATCAAACGCACAATTCAATTATTCTTCTTATTAAAATAATCCTCTCATGCACATATAGGGATGTGCAGAAATATAAATGGATGGAATTCTTTTTTCGGTTCTTTCTCGTTCCTTTCGTATATTCCAAACATTAACTTTTACCCTCTTCCTACTTTTCTTTCTTCTTTTCCTCTTCCAATGTTTATTCCGCCCTGCGCCAGGTTTGGAAGCGAGAGTCTCGGCAGTGGTACTTGCTTCTTGCTCCGACTCCACCCCTCACCTCATTCAGTTGTGATTTCGCAGCGCCACGCAACACTCCGTCTACTCTCGCTTCGARCCTTTAACGGTGTCCATCAATTCGCCGACCGCCCTCCCATCTCGGGTTCATGTCTTGAGAGAAAAAAAATGAATAGTGTACACACACCGTTTCTGTCCTCTTCTAATGGTGATGTGTTCTTTCCCATCTTCTTTCCCACTTTTCATTCTTTTCTTCTTTTTTTTCTCAACAAAAGTTACGGTTCAGATACTCCTTTCTCTCTTTTTCTCTCTCATTCTTTTTCTTCAATTAATTATTTTCCTTCCTAACTGTTTCTTAACCCCAGTTACCCATCATGCAACATCTTTTCGCCAAGTACGAGAAAAGGCTCAAGTTGAACCATATCACTCGGAAGACGTGGGAAGAGGAGCAAACCTTCTCGCGCGTCGGAAAAGCTGTGTTCAAAGTTCCAAGACCACCCAAGCATAAGAAGACATTCCGCTGGGAAATCCGTGAGTTCTTTTTTTGGGTTGTGGCTCCATTTAACTTTGCTTCCGCCGCACGAAAACTTCTTTTCTAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTTTCTTCTTTTCCTCTTC</pcr_primer_p1>
		<pcr_primer_p2>GGTGTGTGTACACTATTCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTTTCTTCTTTTCCTCTTCCAATGTTTATTCCGCCCTGCGCCAGGTTTGGAAGCGAGAGTCTCGGCAGTGGTACTTGCTTCTTGCTCCGACTCCACCCCTCACCTCATTCAGTTGTGATTTCGCAGCGCCACGCAACACTCCGTCTACTCTCGCTTCGAACCTTTAACGGTGTCCATCAATTCGCCGACCGCCCTCCCATCTCGGGTTCATGTCTTGAGAGAAAAAAAATGAATAGTGTACACACACC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTTTCTTCTTTTCCTCTTCCAATGTTTATTCCGCCCTGCGCCAGGTTTGGAAGCGAGAGTCTCGGCAGTGGTACTTGCTTCTTGCTCCGACTCCACCCCTCACCTCATTCAGTTGTGATTTCGCAGCGCCACGCAACACTCCGTCTACTCTCGCTTCGARCCTTTAACGGTGTCCATCAATTCGCCGACCGCCCTCCCATCTCGGGTTCATGTCTTGAGAGAAAAAAAATGAATAGTGTACACACACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11741</snp_id>
        <super_contig>c005800991.Contig1</super_contig>
        <contig_pos>279888</contig_pos>
        <strand>+</strand>
        <context>GAAGGTATGA[A/T]AATGAGTGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCAACTCTATTTGCTCTTGGCTTCACATCAGTTTCGTTGTGAAGGTATGA</left_flank>
        <right_flank>AATGAGTGGGGACATGGAACGAATCGTTTTTCAGGGCTACGTGACTTCAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGCCAAATTTGAAAGTTGACATGCGACGGCCGGATGAGTATATCCGGTCTAAAGCTTTGTGTGTATGTAGAGAGAAGGAGGAGGACAACAGCTCGTTGGTGTGGGGTGAGCTCTCATTATCCGCTTCTATTCTGATATTCTGACGACTACAAAGATGACGGACGAATTGACTTCACCTTCACTAAAATCTGGAAATGTTCTGGCTCTACTTAACACATTGTATACCTCCGGGTTTGCAATGGCGTCGTCTAGTACGCCATTGTTGAAAGGTATGCATTCGAAATTTTCTAGTTAATAGTAATTGTAGTTTTACCTTGCTTAAAATTAAAATATATAACTTTTTCCTAAGAAGCCAATAAAAACGATGTTTTATCATCTTTTTTTATGATCTTGCTTTCAGGAAAAACTTTGCACACCCTATATGCCGTTTCGTTCGTCGTCTACGTCACCAACTCTATTTGCTCTTGGCTTCACATCAGTTTCGTTGTGAAGGTATGAAAATGAGTGGGGACATGGAACGAATCGTTTTTCAGGGCTACGTGACTTCATTTCCATTGAATACTTGGTTGGTTATCTCGTTGGTGGTCACTGCAGTATGTGGGTCAATGTGTACTTGGTTGTTGCTGGTGGGCGGTTTTGGAGAAGAAAGAAAAAAAAATGACGGAATTGTATTTTTAGGTACTTTGTATTGAGAATGCTTTTGCTCATCGACTTGACATCACTCCTTATCGAAGCGGATGTGCACTCTTGTTTGAAGCATTTATCGAATGGACACAGGTGTTGAACTTTCGATCATTTTGTCAGCAAATTTGTGAAAAATTCAACTTTTAGGCATTCAACAACTTCCGAATGTCGTTTCTTATCATGGCACTACACGATGCACCGATCACAATTTTCAACTACTTTTTTATCGCAGCATGCAGATGTCCGAACCCTAAAGTGATTGTTAACTTTTTGAAACAAGGGGGAAATAGTGGAGAAAAAATATTTGCGGAGTAG</canonical>
            <polymorphic>AGGCCAAATTTGAAAGTTGACATGCGACGGCCGGATGAGTATATCCGGTCTAAAGCTTTGTGTGTATGTAGAGAGAAGGAGGAGGACAACAGCTCGTTGGTGTGGGGTGAGCTCTCATTATCCGCTTCTATTCTGATATTCTGACGACTACAAAGATGACGGACGAATTGACTTCACCTTCACTAAAATCTGGAAATGTTCTGGCTCTACTTAACACATTGTATACCTCCGGGTTTGCAATGGCGTCGTCTAGTACGCCATTGTTGAAAGGTATGCATTCGAAATTTTCTAGTTAATAGTAATTGTAGTTTTACCTTGCTTAAAATTAAAATATATAACTTTTTCCTAAGAAGCCAATAAAAACGATGTTTTATCATCTTTTTTTATGATCTTGCTTTCAGGAAAAACTTTGCACACCCTATATGCCGTTTCGTTCGTCGTCTACGTCACCAACTCTATTTGCTCTTGGCTTCACATCAGTTTCGTTGTGAAGGTATGAWAATGAGTGGGGACATGGAACGAATCGTTTTTCAGGGCTACGTGACTTCATTTCCATTGAATACTTGGTTGGTTATCTCGTTGGTGGTCACTGCAGTATGTGGGTCAATGTGTACTTGGTTGTTGCTGGTGGGCGGTTTTGGAGAAGAAAGAAAAAAAAATGACGGAATTGTATTTTTAGGTACTTTGTATTGAGAATGCTTTTGCTCATCGACTTGACATCACTCCTTATCGAAGCGGATGTGCACTCTTGTTTGAAGCATTTATCGAATGGACACAGGTGTTGAACTTTCGATCATTTTGTCAGCAAATTTGTGAAAAATTCAACTTTTAGGCATTCAACAACTTCCGAATGTCGTTTCTTATCATGGCACTACACGATGCACCGATCACAATTTTCAACTACTTTTTTATCGCAGCATGCAGATGTCCGAACCCTAAAGTGATTGTTAACTTTTTGAAACAAGGGGGAAATAGTGGAGAAAAAATATTTGCGGAGTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTTTTTCCTAAGAAGCCAATA</pcr_primer_p1>
		<pcr_primer_p2>GAGATAACCAACCAAGTATTCAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AACTTTTTCCTAAGAAGCCAATAAAAACGATGTTTTATCATCTTTTTTTATGATCTTGCTTTCAGGAAAAACTTTGCACACCCTATATGCCGTTTCGTTCGTCGTCTACGTCACCAACTCTATTTGCTCTTGGCTTCACATCAGTTTCGTTGTGAAGGTATGAAAATGAGTGGGGACATGGAACGAATCGTTTTTCAGGGCTACGTGACTTCATTTCCATTGAATACTTGGTTGGTTATCTC</canonical_amplicon>
		<polymorphic_amplicon>AACTTTTTCCTAAGAAGCCAATAAAAACGATGTTTTATCATCTTTTTTTATGATCTTGCTTTCAGGAAAAACTTTGCACACCCTATATGCCGTTTCGTTCGTCGTCTACGTCACCAACTCTATTTGCTCTTGGCTTCACATCAGTTTCGTTGTGAAGGTATGAWAATGAGTGGGGACATGGAACGAATCGTTTTTCAGGGCTACGTGACTTCATTTCCATTGAATACTTGGTTGGTTATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11742</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>128744</contig_pos>
        <strand>-</strand>
        <context>GACGTCATTA[A/G/T/C]ACACTGGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G/T/C</alleles>
        <left_flank>GACCAACAGACGCGTCTAGCGTTTTATATATAAGAAAGATGACGTCATTA</left_flank>
        <right_flank>ACACTGGTTTACAGCTAGAGTCTACCTGGATTCTGAAAGCGCATACCGTA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCCAGAATTTTTAATTTTATAATTCACAGCAATATTTGAAGATTATCATATTGAAATCACAAAAAAAGTGGTTCCAAAAATGTCACTAAAACCAGAAAATTTTGGAAAATTGAAGTCTAAAGGCTTAATTGTTTTTTAAAATTTCTTTCCGATTTCCGGATATTATTTGGTCCGTCAGACTTTAATTTTTTATTTGTAACCAGCCTTCTGTTTGCCGCGCCTCCGGCGCTTCACAATTCATTTTCAATTATTCGTCGCTCCACTCCTCACTTTTCAATTTTTCTTTATCACGCTGTAGAACATCTACGCCCTCCCTCCCCTCTCCTGGTGTGGGCCTCATGGCGCAGCTGTGTGCGTGCGCGGCTATTGTGCGGAAGGCCGCGGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTCAAAACCCAAAACCGGACAGCCGGACACTAGGACCAACAGACGCGTCTAGCGTTTTATATATAAGAAAGATGACGTCATTATACACTGGTTTACAGCTAGAGTCTACCTGGATTCTGAAAGCGCATACCGTAAACCCTCTAATTGAACGCCCGATCCTAACCGTCCAATTTGAACTCATATATCTCATTTCCGTAAAAGATATCAAAAAGTCAATTTTTAATATCTTTTATAGGAACCGAGATAAATCGGCTCAAAGTTAGGAAAGTAATACAAGTGAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAATGGATGGGTATGACTCTACTTCCGGTGAGAATTAATAGTTTTTTTTTAATTCTCAAATT</canonical>
            <polymorphic>GTTCCAGAATTTTTAATTTTATAATTCACAGCAATATTTGAAGATTATCATATTGAAATCACAAAAAAAGTGGTTCCAAAAATGTCACTAAAACCAGAAAATTTTGGAAAATTGAAGTCTAAAGGCTTAATTGTTTTTTAAAATTTCTTTCCGATTTCCGGATATTATTTGGTCCGTCAGACTTTAATTTTTTATTTGTAACCAGCCTTCTGTTTGCCGCGCCTCCGGCGCTTCACAATTCATTTTCAATTATTCGTCGCTCCACTCCTCACTTTTCAATTTTTCTTTATCACGCTGTAGAACATCTACGCCCTCCCTCCCCTCTCCTGGTGTGGGCCTCATGGCGCAGCTGTGTGCGTGCGCGGCTATTGTGCGGAAGGCCGCGGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTCAAAACCCAAAACCGGACAGCCGGACACTAGGACCAACAGACGCGTCTAGCGTTTTATATATAAGAAAGATGACGTCATTARACACTGGTTTACAGCTAGAGTCTACCTGGATTCTGAAAGCGCATACCGTAAACCCTCTAATTGAACGCCCGATCCTAACCGTCCAATTTGAACTCATATATCTCATTTCCGTAAAAGATATCAAAAAGTCAATTTTTAATATCTTTTATAGGAACCGAGATAAATCGGCTCAAAGTTAGGAAAGTAATACAAGTGAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAATGGATGGGTATGACTCTACTTCCGGTGAGAATTAATAGTTTTTTTTTAATTCTCAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTATCACGCTGTAGAACATCT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAACATTTTCACTTGTATT</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>CTTTATCACGCTGTAGAACATCTACGCCCTCCCTCCCCTCTCCTGGTGTGGGCCTCATGGCGCAGCTGTGTGCGTGCGCGGCTATTGTGCGGAAGGCCGCGGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTCAAAACCCAAAACCGGACAGCCGGACACTAGGACCAACAGACGCGTCTAGCGTTTTATATATAAGAAAGATGACGTCATTATACACTGGTTTACAGCTAGAGTCTACCTGGATTCTGAAAGCGCATACCGTAAACCCTCTAATTGAACGCCCGATCCTAACCGTCCAATTTGAACTCATATATCTCATTTCCGTAAAAGATATCAAAAAGTCAATTTTTAATATCTTTTATAGGAACCGAGATAAATCGGCTCAAAGTTAGGAAAGTAATACAAGTGAAAATGTTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CTTTATCACGCTGTAGAACATCTACGCCCTCCCTCCCCTCTCCTGGTGTGGGCCTCATGGCGCAGCTGTGTGCGTGCGCGGCTATTGTGCGGAAGGCCGCGGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTCAAAACCCAAAACCGGACAGCCGGACACTAGGACCAACAGACGCGTCTAGCGTTTTATATATAAGAAAGATGACGTCATTARACACTGGTTTACAGCTAGAGTCTACCTGGATTCTGAAAGCGCATACCGTAAACCCTCTAATTGAACGCCCGATCCTAACCGTCCAATTTGAACTCATATATCTCATTTCCGTAAAAGATATCAAAAAGTCAATTTTTAATATCTTTTATAGGAACCGAGATAAATCGGCTCAAAGTTAGGAAAGTAATACAAGTGAAAATGTTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11743</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>129141</contig_pos>
        <strand></strand>
        <context>TWTTTTTCGA[T/A]CATTATTCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGA</left_flank>
        <right_flank>CATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAATGGATG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGGCGGCCAACCTTTCATTTCAAAACCCAAAACCGGACAGCCGGACACTAGGACCAACAGACGCGTCTAGCGTTTTATATATAAGAAAGATGACGTCATTATACACTGGTTTACAGCTAGAGTCTACCTGGATTCTGAAAGCGCATACCGTAAACCCTCTAATTGAACGCCCGATCCTAACCGTCCAATTTGAACTCATATATCTCATTTCCGTAAAAGATATCAAAAAGTCAATTTTTAATATCTTTTATAGGAACCGAGATAAATCGGCTCAAAGTTAGGAAAGTAATACAAGTGAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAATGGATGGGTATGACTCTACTTCCGGTGAGAATTAATAGTTTTTTTTTAATTCTCAAATTCTCGAATACAATTTTCAGTTCTCCTTAATAGGTTTCATAGCCAATTGGATGATTGTTCTATCAATTTGGAAATCGAAGAATCTAGCTCACTCATTCGTGTTTCTCACTGCAAACTTTTCGCTTCTCAAGGTGGTTTTTTTTCGATTTAGTTCATTTTGAAACTTTTTTCAGGCCCTATACTCTTCTCTCTATCTGTTTTACATATTTCCAATGATCAGTTTGGATTCAAATTTTCTAAAAGAAGAATCTTATCATATTGGATATCTCATCCTTATCTTATGTGATGCTTCTACACACATCCATTTTATAATATCCATAAATCGATTTTTGGCAGTTTTTGTACCACTTTTGTATTTCAAAACATTTCGCCCGAAAACAACGCAAATGTTTTTGTTGG</canonical>
            <polymorphic>GTGGCGGCCAACCTTTCATTTCAAAACCCAAAACCGGACAGCCGGACACTAGGACCAACAGACGCGTCTAGCGTTTTATATATAAGAAAGATGACGTCATTATACACTGGTTTACAGCTAGAGTCTACCTGGATTCTGAAAGCGCATACCGTAAACCCTCTAATTGAACGCCCGATCCTAACCGTCCAATTTGAACTCATATATCTCATTTCCGTAAAAGATATCAAAAAGTCAATTTTTAATATCTTTTATAGGAACCGAGATAAATCGGCTCAAAGTTAGGAAAGTAATACAAGTGAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGAWCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAATGGATGGGTATGACTCTACTTCCGGTGAGAATTAATAGTTTTTTTTTAATTCTCAAATTCTCGAATACAATTTTCAGTTCTCCTTAATAGGTTTCATAGCCAATTGGATGATTGTTCTATCAATTTGGAAATCGAAGAATCTAGCTCACTCATTCGTGTTTCTCACTGCAAACTTTTCGCTTCTCAAGGTGGTTTTTTTTCGATTTAGTTCATTTTGAAACTTTTTTCAGGCCCTATACTCTTCTCTCTATCTGTTTTACATATTTCCAATGATCAGTTTGGATTCAAATTTTCTAAAAGAAGAATCTTATCATATTGGATATCTCATCCTTATCTTATGTGATGCTTCTACACACATCCATTTTATAATATCCATAAATCGATTTTTGGCAGTTTTTGTACCACTTTTGTATTTCAAAACATTTCGCCCGAAAACAACGCAAATGTTTTTGTTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>324 318 185 173</canonical_bands>
                <polymorphic_bands>642 185 173</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGAAAAAGGAAGTAAACAATG</pcr_primer_p1>
		<pcr_primer_p2>TCCAAATTGATAGAACAATCATC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAATGGATGGGTATGACTCTACTTCCGGTGAGAATTAATAGTTTTTTTTTAATTCTCAAATTCTCGAATACAATTTTCAGTTCTCCTTAATAGGTTTCATAGCCAATTGGATGATTGTTCTATCAATTTGGA</canonical_amplicon>
		<polymorphic_amplicon>TCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGAWCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAATGGATGGGTATGACTCTACTTCCGGTGAGAATTAATAGTTTTTTTTTAATTCTCAAATTCTCGAATACAATTTTCAGTTCTCCTTAATAGGTTTCATAGCCAATTGGATGATTGTTCTATCAATTTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11744</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>129098</contig_pos>
        <strand>-</strand>
        <context>ATGAGKAGAT[A/C/T/G]CGAAATTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C/T/G</alleles>
        <left_flank>TCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGAT</left_flank>
        <right_flank>CGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCGTGCGCGGCTATTGTGCGGAAGGCCGCGGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTCAAAACCCAAAACCGGACAGCCGGACACTAGGACCAACAGACGCGTCTAGCGTTTTATATATAAGAAAGATGACGTCATTATACACTGGTTTACAGCTAGAGTCTACCTGGATTCTGAAAGCGCATACCGTAAACCCTCTAATTGAACGCCCGATCCTAACCGTCCAATTTGAACTCATATATCTCATTTCCGTAAAAGATATCAAAAAGTCAATTTTTAATATCTTTTATAGGAACCGAGATAAATCGGCTCAAAGTTAGGAAAGTAATACAAGTGAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAATGGATGGGTATGACTCTACTTCCGGTGAGAATTAATAGTTTTTTTTTAATTCTCAAATTCTCGAATACAATTTTCAGTTCTCCTTAATAGGTTTCATAGCCAATTGGATGATTGTTCTATCAATTTGGAAATCGAAGAATCTAGCTCACTCATTCGTGTTTCTCACTGCAAACTTTTCGCTTCTCAAGGTGGTTTTTTTTCGATTTAGTTCATTTTGAAACTTTTTTCAGGCCCTATACTCTTCTCTCTATCTGTTTTACATATTTCCAATGATCAGTTTGGATTCAAATTTTCTAAAAGAAGAATCTTATCATATTGGATATCTCATCCTTATCTTATGTGATGCTTCTACACACATCCATTTTATAATATCCATAAATCGATTTTTGGCAGTTTTTGTACCACTTTTGTAT</canonical>
            <polymorphic>TGCGTGCGCGGCTATTGTGCGGAAGGCCGCGGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTCAAAACCCAAAACCGGACAGCCGGACACTAGGACCAACAGACGCGTCTAGCGTTTTATATATAAGAAAGATGACGTCATTATACACTGGTTTACAGCTAGAGTCTACCTGGATTCTGAAAGCGCATACCGTAAACCCTCTAATTGAACGCCCGATCCTAACCGTCCAATTTGAACTCATATATCTCATTTCCGTAAAAGATATCAAAAAGTCAATTTTTAATATCTTTTATAGGAACCGAGATAAATCGGCTCAAAGTTAGGAAAGTAATACAAGTGAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATMCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAATGGATGGGTATGACTCTACTTCCGGTGAGAATTAATAGTTTTTTTTTAATTCTCAAATTCTCGAATACAATTTTCAGTTCTCCTTAATAGGTTTCATAGCCAATTGGATGATTGTTCTATCAATTTGGAAATCGAAGAATCTAGCTCACTCATTCGTGTTTCTCACTGCAAACTTTTCGCTTCTCAAGGTGGTTTTTTTTCGATTTAGTTCATTTTGAAACTTTTTTCAGGCCCTATACTCTTCTCTCTATCTGTTTTACATATTTCCAATGATCAGTTTGGATTCAAATTTTCTAAAAGAAGAATCTTATCATATTGGATATCTCATCCTTATCTTATGTGATGCTTCTACACACATCCATTTTATAATATCCATAAATCGATTTTTGGCAGTTTTTGTACCACTTTTGTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 180 109 71 68 39 32</canonical_bands>
                <polymorphic_bands>540 180 109 71 68 32</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>283 164 145 125 110 88 39 21 14 11</canonical_bands>
                <polymorphic_bands>283 164 145 125 110 88 53 21 11</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>283 213 175 145 110 39 21 14</canonical_bands>
                <polymorphic_bands>283 213 175 145 110 53 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATGTTCAAAAATTCGTAAG</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTGAGTTTTCATGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAAT</canonical_amplicon>
		<polymorphic_amplicon>GAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATMCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11745</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>129093</contig_pos>
        <strand>-</strand>
        <context>AAACAATGAG[G/T/C/A]AGATMCGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T/C/A</alleles>
        <left_flank>ACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAG</left_flank>
        <right_flank>AGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTGTGCGTGCGCGGCTATTGTGCGGAAGGCCGCGGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTCAAAACCCAAAACCGGACAGCCGGACACTAGGACCAACAGACGCGTCTAGCGTTTTATATATAAGAAAGATGACGTCATTATACACTGGTTTACAGCTAGAGTCTACCTGGATTCTGAAAGCGCATACCGTAAACCCTCTAATTGAACGCCCGATCCTAACCGTCCAATTTGAACTCATATATCTCATTTCCGTAAAAGATATCAAAAAGTCAATTTTTAATATCTTTTATAGGAACCGAGATAAATCGGCTCAAAGTTAGGAAAGTAATACAAGTGAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAATGGATGGGTATGACTCTACTTCCGGTGAGAATTAATAGTTTTTTTTTAATTCTCAAATTCTCGAATACAATTTTCAGTTCTCCTTAATAGGTTTCATAGCCAATTGGATGATTGTTCTATCAATTTGGAAATCGAAGAATCTAGCTCACTCATTCGTGTTTCTCACTGCAAACTTTTCGCTTCTCAAGGTGGTTTTTTTTCGATTTAGTTCATTTTGAAACTTTTTTCAGGCCCTATACTCTTCTCTCTATCTGTTTTACATATTTCCAATGATCAGTTTGGATTCAAATTTTCTAAAAGAAGAATCTTATCATATTGGATATCTCATCCTTATCTTATGTGATGCTTCTACACACATCCATTTTATAATATCCATAAATCGATTTTTGGCAGTTTTTGTACCACTTT</canonical>
            <polymorphic>CTGTGTGCGTGCGCGGCTATTGTGCGGAAGGCCGCGGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTCAAAACCCAAAACCGGACAGCCGGACACTAGGACCAACAGACGCGTCTAGCGTTTTATATATAAGAAAGATGACGTCATTATACACTGGTTTACAGCTAGAGTCTACCTGGATTCTGAAAGCGCATACCGTAAACCCTCTAATTGAACGCCCGATCCTAACCGTCCAATTTGAACTCATATATCTCATTTCCGTAAAAGATATCAAAAAGTCAATTTTTAATATCTTTTATAGGAACCGAGATAAATCGGCTCAAAGTTAGGAAAGTAATACAAGTGAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGKAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAATGGATGGGTATGACTCTACTTCCGGTGAGAATTAATAGTTTTTTTTTAATTCTCAAATTCTCGAATACAATTTTCAGTTCTCCTTAATAGGTTTCATAGCCAATTGGATGATTGTTCTATCAATTTGGAAATCGAAGAATCTAGCTCACTCATTCGTGTTTCTCACTGCAAACTTTTCGCTTCTCAAGGTGGTTTTTTTTCGATTTAGTTCATTTTGAAACTTTTTTCAGGCCCTATACTCTTCTCTCTATCTGTTTTACATATTTCCAATGATCAGTTTGGATTCAAATTTTCTAAAAGAAGAATCTTATCATATTGGATATCTCATCCTTATCTTATGTGATGCTTCTACACACATCCATTTTATAATATCCATAAATCGATTTTTGGCAGTTTTTGTACCACTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATGTTCAAAAATTCGTAAG</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTGAGTTTTCATGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAAT</canonical_amplicon>
		<polymorphic_amplicon>GAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGKAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11746</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>129058</contig_pos>
        <strand>-</strand>
        <context>TCCCATGAGA[C/T/A/G]TCAGGCGGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T/A/G</alleles>
        <left_flank>GGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGA</left_flank>
        <right_flank>TCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCTCCCCTCTCCTGGTGTGGGCCTCATGGCGCAGCTGTGTGCGTGCGCGGCTATTGTGCGGAAGGCCGCGGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTCAAAACCCAAAACCGGACAGCCGGACACTAGGACCAACAGACGCGTCTAGCGTTTTATATATAAGAAAGATGACGTCATTATACACTGGTTTACAGCTAGAGTCTACCTGGATTCTGAAAGCGCATACCGTAAACCCTCTAATTGAACGCCCGATCCTAACCGTCCAATTTGAACTCATATATCTCATTTCCGTAAAAGATATCAAAAAGTCAATTTTTAATATCTTTTATAGGAACCGAGATAAATCGGCTCAAAGTTAGGAAAGTAATACAAGTGAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAATGGATGGGTATGACTCTACTTCCGGTGAGAATTAATAGTTTTTTTTTAATTCTCAAATTCTCGAATACAATTTTCAGTTCTCCTTAATAGGTTTCATAGCCAATTGGATGATTGTTCTATCAATTTGGAAATCGAAGAATCTAGCTCACTCATTCGTGTTTCTCACTGCAAACTTTTCGCTTCTCAAGGTGGTTTTTTTTCGATTTAGTTCATTTTGAAACTTTTTTCAGGCCCTATACTCTTCTCTCTATCTGTTTTACATATTTCCAATGATCAGTTTGGATTCAAATTTTCTAAAAGAAGAATCTTATCATATTGGATATCTCATCCTTATCTTATGTGATGCTTCTACACACATCCATTTTATAATATC</canonical>
            <polymorphic>CCCTCCCCTCTCCTGGTGTGGGCCTCATGGCGCAGCTGTGTGCGTGCGCGGCTATTGTGCGGAAGGCCGCGGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTCAAAACCCAAAACCGGACAGCCGGACACTAGGACCAACAGACGCGTCTAGCGTTTTATATATAAGAAAGATGACGTCATTATACACTGGTTTACAGCTAGAGTCTACCTGGATTCTGAAAGCGCATACCGTAAACCCTCTAATTGAACGCCCGATCCTAACCGTCCAATTTGAACTCATATATCTCATTTCCGTAAAAGATATCAAAAAGTCAATTTTTAATATCTTTTATAGGAACCGAGATAAATCGGCTCAAAGTTAGGAAAGTAATACAAGTGAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGAYTCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAATGGATGGGTATGACTCTACTTCCGGTGAGAATTAATAGTTTTTTTTTAATTCTCAAATTCTCGAATACAATTTTCAGTTCTCCTTAATAGGTTTCATAGCCAATTGGATGATTGTTCTATCAATTTGGAAATCGAAGAATCTAGCTCACTCATTCGTGTTTCTCACTGCAAACTTTTCGCTTCTCAAGGTGGTTTTTTTTCGATTTAGTTCATTTTGAAACTTTTTTCAGGCCCTATACTCTTCTCTCTATCTGTTTTACATATTTCCAATGATCAGTTTGGATTCAAATTTTCTAAAAGAAGAATCTTATCATATTGGATATCTCATCCTTATCTTATGTGATGCTTCTACACACATCCATTTTATAATATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>283 215 213 145 70 39 21 14</canonical_bands>
                <polymorphic_bands>322 215 213 145 70 21 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATGTTCAAAAATTCGTAAG</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTGAGTTTTCATGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAAT</canonical_amplicon>
		<polymorphic_amplicon>GAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGAYTCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11747</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>129028</contig_pos>
        <strand></strand>
        <context>TCCGAAAAAA[A/T]WTTTCTGCGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAA</left_flank>
        <right_flank>TTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTATCACGCTGTAGAACATCTACGCCCTCCCTCCCCTCTCCTGGTGTGGGCCTCATGGCGCAGCTGTGTGCGTGCGCGGCTATTGTGCGGAAGGCCGCGGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTCAAAACCCAAAACCGGACAGCCGGACACTAGGACCAACAGACGCGTCTAGCGTTTTATATATAAGAAAGATGACGTCATTATACACTGGTTTACAGCTAGAGTCTACCTGGATTCTGAAAGCGCATACCGTAAACCCTCTAATTGAACGCCCGATCCTAACCGTCCAATTTGAACTCATATATCTCATTTCCGTAAAAGATATCAAAAAGTCAATTTTTAATATCTTTTATAGGAACCGAGATAAATCGGCTCAAAGTTAGGAAAGTAATACAAGTGAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAATGGATGGGTATGACTCTACTTCCGGTGAGAATTAATAGTTTTTTTTTAATTCTCAAATTCTCGAATACAATTTTCAGTTCTCCTTAATAGGTTTCATAGCCAATTGGATGATTGTTCTATCAATTTGGAAATCGAAGAATCTAGCTCACTCATTCGTGTTTCTCACTGCAAACTTTTCGCTTCTCAAGGTGGTTTTTTTTCGATTTAGTTCATTTTGAAACTTTTTTCAGGCCCTATACTCTTCTCTCTATCTGTTTTACATATTTCCAATGATCAGTTTGGATTCAAATTTTCTAAAAGAAGAATCTTATCATATTGGATATCTCATCCTTATCTTATGTGA</canonical>
            <polymorphic>CTTTATCACGCTGTAGAACATCTACGCCCTCCCTCCCCTCTCCTGGTGTGGGCCTCATGGCGCAGCTGTGTGCGTGCGCGGCTATTGTGCGGAAGGCCGCGGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTCAAAACCCAAAACCGGACAGCCGGACACTAGGACCAACAGACGCGTCTAGCGTTTTATATATAAGAAAGATGACGTCATTATACACTGGTTTACAGCTAGAGTCTACCTGGATTCTGAAAGCGCATACCGTAAACCCTCTAATTGAACGCCCGATCCTAACCGTCCAATTTGAACTCATATATCTCATTTCCGTAAAAGATATCAAAAAGTCAATTTTTAATATCTTTTATAGGAACCGAGATAAATCGGCTCAAAGTTAGGAAAGTAATACAAGTGAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAWTTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAATGGATGGGTATGACTCTACTTCCGGTGAGAATTAATAGTTTTTTTTTAATTCTCAAATTCTCGAATACAATTTTCAGTTCTCCTTAATAGGTTTCATAGCCAATTGGATGATTGTTCTATCAATTTGGAAATCGAAGAATCTAGCTCACTCATTCGTGTTTCTCACTGCAAACTTTTCGCTTCTCAAGGTGGTTTTTTTTCGATTTAGTTCATTTTGAAACTTTTTTCAGGCCCTATACTCTTCTCTCTATCTGTTTTACATATTTCCAATGATCAGTTTGGATTCAAATTTTCTAAAAGAAGAATCTTATCATATTGGATATCTCATCCTTATCTTATGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>423 232 139 75 56 35 27 13</canonical_bands>
                <polymorphic_bands>423 232 139 102 56 35 13</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>274 166 113 77 75 56 46 35 33 27 26 20 18 13 13 8</canonical_bands>
                <polymorphic_bands>274 166 113 102 77 56 46 35 33 26 20 18 13 13 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATGTTCAAAAATTCGTAAG</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTGAGTTTTCATGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAAT</canonical_amplicon>
		<polymorphic_amplicon>GAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAWTTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11748</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>128987</contig_pos>
        <strand>-</strand>
        <context>GAAATGTCAG[C/T/A/G]ATTTTTTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T/A/G</alleles>
        <left_flank>GTGAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAG</left_flank>
        <right_flank>ATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCAATTATTCGTCGCTCCACTCCTCACTTTTCAATTTTTCTTTATCACGCTGTAGAACATCTACGCCCTCCCTCCCCTCTCCTGGTGTGGGCCTCATGGCGCAGCTGTGTGCGTGCGCGGCTATTGTGCGGAAGGCCGCGGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTCAAAACCCAAAACCGGACAGCCGGACACTAGGACCAACAGACGCGTCTAGCGTTTTATATATAAGAAAGATGACGTCATTATACACTGGTTTACAGCTAGAGTCTACCTGGATTCTGAAAGCGCATACCGTAAACCCTCTAATTGAACGCCCGATCCTAACCGTCCAATTTGAACTCATATATCTCATTTCCGTAAAAGATATCAAAAAGTCAATTTTTAATATCTTTTATAGGAACCGAGATAAATCGGCTCAAAGTTAGGAAAGTAATACAAGTGAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAATGGATGGGTATGACTCTACTTCCGGTGAGAATTAATAGTTTTTTTTTAATTCTCAAATTCTCGAATACAATTTTCAGTTCTCCTTAATAGGTTTCATAGCCAATTGGATGATTGTTCTATCAATTTGGAAATCGAAGAATCTAGCTCACTCATTCGTGTTTCTCACTGCAAACTTTTCGCTTCTCAAGGTGGTTTTTTTTCGATTTAGTTCATTTTGAAACTTTTTTCAGGCCCTATACTCTTCTCTCTATCTGTTTTACATATTTCCAATGATCAGTTTGGATTCAAATTTTCTAAAAGAA</canonical>
            <polymorphic>TTTCAATTATTCGTCGCTCCACTCCTCACTTTTCAATTTTTCTTTATCACGCTGTAGAACATCTACGCCCTCCCTCCCCTCTCCTGGTGTGGGCCTCATGGCGCAGCTGTGTGCGTGCGCGGCTATTGTGCGGAAGGCCGCGGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTCAAAACCCAAAACCGGACAGCCGGACACTAGGACCAACAGACGCGTCTAGCGTTTTATATATAAGAAAGATGACGTCATTATACACTGGTTTACAGCTAGAGTCTACCTGGATTCTGAAAGCGCATACCGTAAACCCTCTAATTGAACGCCCGATCCTAACCGTCCAATTTGAACTCATATATCTCATTTCCGTAAAAGATATCAAAAAGTCAATTTTTAATATCTTTTATAGGAACCGAGATAAATCGGCTCAAAGTTAGGAAAGTAATACAAGTGAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGYATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAATGGATGGGTATGACTCTACTTCCGGTGAGAATTAATAGTTTTTTTTTAATTCTCAAATTCTCGAATACAATTTTCAGTTCTCCTTAATAGGTTTCATAGCCAATTGGATGATTGTTCTATCAATTTGGAAATCGAAGAATCTAGCTCACTCATTCGTGTTTCTCACTGCAAACTTTTCGCTTCTCAAGGTGGTTTTTTTTCGATTTAGTTCATTTTGAAACTTTTTTCAGGCCCTATACTCTTCTCTCTATCTGTTTTACATATTTCCAATGATCAGTTTGGATTCAAATTTTCTAAAAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>464 232 139 75 35 27 15 13</canonical_bands>
                <polymorphic_bands>464 232 139 75 48 27 15</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>379 291 207 50 38 35</canonical_bands>
                <polymorphic_bands>379 291 242 50 38</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>281 166 113 77 75 46 35 33 30 27 26 20 18 15 13 13 8 4</canonical_bands>
                <polymorphic_bands>281 166 113 77 75 48 46 33 30 27 26 20 18 15 13 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATACAAGTGAAAATGTTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATATATGACGGGAGGGAATC</pcr_primer_p2>
		<pcr_amplicon_size>199</pcr_amplicon_size>
		<canonical_amplicon>AATACAAGTGAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATAT</canonical_amplicon>
		<polymorphic_amplicon>AATACAAGTGAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGYATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11749</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>134388</contig_pos>
        <strand>+</strand>
        <context>GCATCATTCA[A/C]AWAAAAATTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTCTGTTAAATTAGAAGTAAGAAAAACGAATTTCAACTCGCATCATTCA</left_flank>
        <right_flank>AAAAAAATTAGCTGATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTTTTCCTGTTCTACATTCTTCAAAATTTTCAAAGTGATCCAAAACTTGACAGCGGAGCTCCAGAGTCCTGAAAATGCCAAACACCAACATTAAAATATGGTTTTGTAGATCTTATTGACTGGTACTGTATGCATCATGCTTAATGAAGTTGCGTCCCTTTTTTGTCAGTTTATCTGTCCGCCCATTTTGAAAAGATTGAAAATTAAATATAAATTGACGTGACCTTTTAAGAAACAGCGAGGAGCAAAGCGACGAACGATTAAAAACTAGGCTAAATCGCGCCGAAGGCCCACCAGCCAGTTGTTTGAAGCGCCGGAAATGCGCCAAACAGTCTGGTAATTCTGAAAGTTTTACGAATTGCTCAGCATGTTTTCTACTAGATGTTCATAAGGAAACTCACGAAATGATGTGAACCATCAGTAGTTTCCGATATTCATTTTAAAATGTTCTGTTAAATTAGAAGTAAGAAAAACGAATTTCAACTCGCATCATTCAAAAAAAAATTAGCTGATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGATAACGAAAATGGTAATTATGAAATCGGTAATCTGAAATTTCGTTTTCTAAGTTTAAGTCATACAGCATTTTTGAATTGTGTAGAGCTAAAAGACGACTCAACAACTCTGATAAGACCTTTTTTTTATATTTTGCATAAGCTTTTTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTCGTTCGTCTCCAATTCGAAAACGAG</canonical>
            <polymorphic>AAAGTTTTCCTGTTCTACATTCTTCAAAATTTTCAAAGTGATCCAAAACTTGACAGCGGAGCTCCAGAGTCCTGAAAATGCCAAACACCAACATTAAAATATGGTTTTGTAGATCTTATTGACTGGTACTGTATGCATCATGCTTAATGAAGTTGCGTCCCTTTTTTGTCAGTTTATCTGTCCGCCCATTTTGAAAAGATTGAAAATTAAATATAAATTGACGTGACCTTTTAAGAAACAGCGAGGAGCAAAGCGACGAACGATTAAAAACTAGGCTAAATCGCGCCGAAGGCCCACCAGCCAGTTGTTTGAAGCGCCGGAAATGCGCCAAACAGTCTGGTAATTCTGAAAGTTTTACGAATTGCTCAGCATGTTTTCTACTAGATGTTCATAAGGAAACTCACGAAATGATGTGAACCATCAGTAGTTTCCGATATTCATTTTAAAATGTTCTGTTAAATTAGAAGTAAGAAAAACGAATTTCAACTCGCATCATTCAMAAAAAAATTAGCTGATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGATAACGAAAATGGTAATTATGAAATCGGTAATCTGAAATTTCGTTTTCTAAGTTTAAGTCATACAGCATTTTTGAATTGTGTAGAGCTAAAAGACGACTCAACAACTCTGATAAGACCTTTTTTTTATATTTTGCATAAGCTTTTTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTCGTTCGTCTCCAATTCGAAAACGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGTTTTACGAATTGCTCAG</pcr_primer_p1>
		<pcr_primer_p2>TCATTAAAAATGACGATTTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAAGTTTTACGAATTGCTCAGCATGTTTTCTACTAGATGTTCATAAGGAAACTCACGAAATGATGTGAACCATCAGTAGTTTCCGATATTCATTTTAAAATGTTCTGTTAAATTAGAAGTAAGAAAAACGAATTTCAACTCGCATCATTCAAAAAAAAATTAGCTGATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGA</canonical_amplicon>
		<polymorphic_amplicon>GAAAGTTTTACGAATTGCTCAGCATGTTTTCTACTAGATGTTCATAAGGAAACTCACGAAATGATGTGAACCATCAGTAGTTTCCGATATTCATTTTAAAATGTTCTGTTAAATTAGAAGTAAGAAAAACGAATTTCAACTCGCATCATTCAMAAAAAAATTAGCTGATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11750</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>134390</contig_pos>
        <strand>+</strand>
        <context>ATCATTCAMA[A/T]AAAAATTAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTGTTAAATTAGAAGTAAGAAAAACGAATTTCAACTCGCATCATTCAAA</left_flank>
        <right_flank>AAAAATTAGCTGATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTTTCCTGTTCTACATTCTTCAAAATTTTCAAAGTGATCCAAAACTTGACAGCGGAGCTCCAGAGTCCTGAAAATGCCAAACACCAACATTAAAATATGGTTTTGTAGATCTTATTGACTGGTACTGTATGCATCATGCTTAATGAAGTTGCGTCCCTTTTTTGTCAGTTTATCTGTCCGCCCATTTTGAAAAGATTGAAAATTAAATATAAATTGACGTGACCTTTTAAGAAACAGCGAGGAGCAAAGCGACGAACGATTAAAAACTAGGCTAAATCGCGCCGAAGGCCCACCAGCCAGTTGTTTGAAGCGCCGGAAATGCGCCAAACAGTCTGGTAATTCTGAAAGTTTTACGAATTGCTCAGCATGTTTTCTACTAGATGTTCATAAGGAAACTCACGAAATGATGTGAACCATCAGTAGTTTCCGATATTCATTTTAAAATGTTCTGTTAAATTAGAAGTAAGAAAAACGAATTTCAACTCGCATCATTCAAAAAAAAATTAGCTGATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGATAACGAAAATGGTAATTATGAAATCGGTAATCTGAAATTTCGTTTTCTAAGTTTAAGTCATACAGCATTTTTGAATTGTGTAGAGCTAAAAGACGACTCAACAACTCTGATAAGACCTTTTTTTTATATTTTGCATAAGCTTTTTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTCGTTCGTCTCCAATTCGAAAACGAGAA</canonical>
            <polymorphic>AGTTTTCCTGTTCTACATTCTTCAAAATTTTCAAAGTGATCCAAAACTTGACAGCGGAGCTCCAGAGTCCTGAAAATGCCAAACACCAACATTAAAATATGGTTTTGTAGATCTTATTGACTGGTACTGTATGCATCATGCTTAATGAAGTTGCGTCCCTTTTTTGTCAGTTTATCTGTCCGCCCATTTTGAAAAGATTGAAAATTAAATATAAATTGACGTGACCTTTTAAGAAACAGCGAGGAGCAAAGCGACGAACGATTAAAAACTAGGCTAAATCGCGCCGAAGGCCCACCAGCCAGTTGTTTGAAGCGCCGGAAATGCGCCAAACAGTCTGGTAATTCTGAAAGTTTTACGAATTGCTCAGCATGTTTTCTACTAGATGTTCATAAGGAAACTCACGAAATGATGTGAACCATCAGTAGTTTCCGATATTCATTTTAAAATGTTCTGTTAAATTAGAAGTAAGAAAAACGAATTTCAACTCGCATCATTCAAAWAAAAATTAGCTGATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGATAACGAAAATGGTAATTATGAAATCGGTAATCTGAAATTTCGTTTTCTAAGTTTAAGTCATACAGCATTTTTGAATTGTGTAGAGCTAAAAGACGACTCAACAACTCTGATAAGACCTTTTTTTTATATTTTGCATAAGCTTTTTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTCGTTCGTCTCCAATTCGAAAACGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGTTTTACGAATTGCTCAG</pcr_primer_p1>
		<pcr_primer_p2>TCATTAAAAATGACGATTTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAAGTTTTACGAATTGCTCAGCATGTTTTCTACTAGATGTTCATAAGGAAACTCACGAAATGATGTGAACCATCAGTAGTTTCCGATATTCATTTTAAAATGTTCTGTTAAATTAGAAGTAAGAAAAACGAATTTCAACTCGCATCATTCAAAAAAAAATTAGCTGATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGA</canonical_amplicon>
		<polymorphic_amplicon>GAAAGTTTTACGAATTGCTCAGCATGTTTTCTACTAGATGTTCATAAGGAAACTCACGAAATGATGTGAACCATCAGTAGTTTCCGATATTCATTTTAAAATGTTCTGTTAAATTAGAAGTAAGAAAAACGAATTTCAACTCGCATCATTCAAAWAAAAATTAGCTGATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11753</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>134528</contig_pos>
        <strand>+</strand>
        <context>AAATTTCGTT[G/T]TCTAAGTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAATGATAACGAAAATGGTAATTATGAAATCGGTAATCTGAAATTTCGTT</left_flank>
        <right_flank>TCTAAGTTTAAGTCATACAGCATTTTTGAATTGTGTAGAGCTAAAAGACG</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTTAATGAAGTTGCGTCCCTTTTTTGTCAGTTTATCTGTCCGCCCATTTTGAAAAGATTGAAAATTAAATATAAATTGACGTGACCTTTTAAGAAACAGCGAGGAGCAAAGCGACGAACGATTAAAAACTAGGCTAAATCGCGCCGAAGGCCCACCAGCCAGTTGTTTGAAGCGCCGGAAATGCGCCAAACAGTCTGGTAATTCTGAAAGTTTTACGAATTGCTCAGCATGTTTTCTACTAGATGTTCATAAGGAAACTCACGAAATGATGTGAACCATCAGTAGTTTCCGATATTCATTTTAAAATGTTCTGTTAAATTAGAAGTAAGAAAAACGAATTTCAACTCGCATCATTCAAAAAAAAATTAGCTGATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGATAACGAAAATGGTAATTATGAAATCGGTAATCTGAAATTTCGTTTTCTAAGTTTAAGTCATACAGCATTTTTGAATTGTGTAGAGCTAAAAGACGACTCAACAACTCTGATAAGACCTTTTTTTTATATTTTGCATAAGCTTTTTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTCGTTCGTCTCCAATTCGAAAACGAGAAGACTATTCTTCAACCACTTCAAGGAATCTGGATCCAGAAAATATCACTGTCACGTCTTCTGGAAGTCAGCATCTGACGACTCCGGAAGTTCGGAATCTGACGTCTTCTGGAAATCAAAACCGGACCGTTTCGAAACTT</canonical>
            <polymorphic>TGCTTAATGAAGTTGCGTCCCTTTTTTGTCAGTTTATCTGTCCGCCCATTTTGAAAAGATTGAAAATTAAATATAAATTGACGTGACCTTTTAAGAAACAGCGAGGAGCAAAGCGACGAACGATTAAAAACTAGGCTAAATCGCGCCGAAGGCCCACCAGCCAGTTGTTTGAAGCGCCGGAAATGCGCCAAACAGTCTGGTAATTCTGAAAGTTTTACGAATTGCTCAGCATGTTTTCTACTAGATGTTCATAAGGAAACTCACGAAATGATGTGAACCATCAGTAGTTTCCGATATTCATTTTAAAATGTTCTGTTAAATTAGAAGTAAGAAAAACGAATTTCAACTCGCATCATTCAAAAAAAAATTAGCTGATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGATAACGAAAATGGTAATTATGAAATCGGTAATCTGAAATTTCGTTKTCTAAGTTTAAGTCATACAGCATTTTTGAATTGTGTAGAGCTAAAAGACGACTCAACAACTCTGATAAGACCTTTTTTTTATATTTTGCATAAGCTTTTTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTCGTTCGTCTCCAATTCGAAAACGAGAAGACTATTCTTCAACCACTTCAAGGAATCTGGATCCAGAAAATATCACTGTCACGTCTTCTGGAAGTCAGCATCTGACGACTCCGGAAGTTCGGAATCTGACGTCTTCTGGAAATCAAAACCGGACCGTTTCGAAACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGCTTCTTATCAGTTCAAAGAG</pcr_primer_p1>
		<pcr_primer_p2>AAAGTTGCTCATTTTTCATCTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGATAACGAAAATGGTAATTATGAAATCGGTAATCTGAAATTTCGTTTTCTAAGTTTAAGTCATACAGCATTTTTGAATTGTGTAGAGCTAAAAGACGACTCAACAACTCTGATAAGACCTTTTTTTTATATTTTGCATAAGCTTTTTTAAGATGAAAAATGAGCAACTTT</canonical_amplicon>
		<polymorphic_amplicon>ATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGATAACGAAAATGGTAATTATGAAATCGGTAATCTGAAATTTCGTTKTCTAAGTTTAAGTCATACAGCATTTTTGAATTGTGTAGAGCTAAAAGACGACTCAACAACTCTGATAAGACCTTTTTTTTATATTTTGCATAAGCTTTTTTAAGATGAAAAATGAGCAACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11755</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>134548</contig_pos>
        <strand>+</strand>
        <context>AAGTCATACA[A/G]CATTTTTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTATGAAATCGGTAATCTGAAATTTCGTTTTCTAAGTTTAAGTCATACA</left_flank>
        <right_flank>CATTTTTGAATTGTGTAGAGCTAAAAGACGACTCAACAACTCTGATAAGA</right_flank>
        <qual_score>145</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTTTGTCAGTTTATCTGTCCGCCCATTTTGAAAAGATTGAAAATTAAATATAAATTGACGTGACCTTTTAAGAAACAGCGAGGAGCAAAGCGACGAACGATTAAAAACTAGGCTAAATCGCGCCGAAGGCCCACCAGCCAGTTGTTTGAAGCGCCGGAAATGCGCCAAACAGTCTGGTAATTCTGAAAGTTTTACGAATTGCTCAGCATGTTTTCTACTAGATGTTCATAAGGAAACTCACGAAATGATGTGAACCATCAGTAGTTTCCGATATTCATTTTAAAATGTTCTGTTAAATTAGAAGTAAGAAAAACGAATTTCAACTCGCATCATTCAAAAAAAAATTAGCTGATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGATAACGAAAATGGTAATTATGAAATCGGTAATCTGAAATTTCGTTTTCTAAGTTTAAGTCATACAGCATTTTTGAATTGTGTAGAGCTAAAAGACGACTCAACAACTCTGATAAGACCTTTTTTTTATATTTTGCATAAGCTTTTTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTCGTTCGTCTCCAATTCGAAAACGAGAAGACTATTCTTCAACCACTTCAAGGAATCTGGATCCAGAAAATATCACTGTCACGTCTTCTGGAAGTCAGCATCTGACGACTCCGGAAGTTCGGAATCTGACGTCTTCTGGAAATCAAAACCGGACCGTTTCGAAACTTTTCACTACTCCAAAAGCCCC</canonical>
            <polymorphic>CTTTTTTGTCAGTTTATCTGTCCGCCCATTTTGAAAAGATTGAAAATTAAATATAAATTGACGTGACCTTTTAAGAAACAGCGAGGAGCAAAGCGACGAACGATTAAAAACTAGGCTAAATCGCGCCGAAGGCCCACCAGCCAGTTGTTTGAAGCGCCGGAAATGCGCCAAACAGTCTGGTAATTCTGAAAGTTTTACGAATTGCTCAGCATGTTTTCTACTAGATGTTCATAAGGAAACTCACGAAATGATGTGAACCATCAGTAGTTTCCGATATTCATTTTAAAATGTTCTGTTAAATTAGAAGTAAGAAAAACGAATTTCAACTCGCATCATTCAAAAAAAAATTAGCTGATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGATAACGAAAATGGTAATTATGAAATCGGTAATCTGAAATTTCGTTTTCTAAGTTTAAGTCATACARCATTTTTGAATTGTGTAGAGCTAAAAGACGACTCAACAACTCTGATAAGACCTTTTTTTTATATTTTGCATAAGCTTTTTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTCGTTCGTCTCCAATTCGAAAACGAGAAGACTATTCTTCAACCACTTCAAGGAATCTGGATCCAGAAAATATCACTGTCACGTCTTCTGGAAGTCAGCATCTGACGACTCCGGAAGTTCGGAATCTGACGTCTTCTGGAAATCAAAACCGGACCGTTTCGAAACTTTTCACTACTCCAAAAGCCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGCTTCTTATCAGTTCAAAGAG</pcr_primer_p1>
		<pcr_primer_p2>AAAGTTGCTCATTTTTCATCTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGATAACGAAAATGGTAATTATGAAATCGGTAATCTGAAATTTCGTTTTCTAAGTTTAAGTCATACAGCATTTTTGAATTGTGTAGAGCTAAAAGACGACTCAACAACTCTGATAAGACCTTTTTTTTATATTTTGCATAAGCTTTTTTAAGATGAAAAATGAGCAACTTT</canonical_amplicon>
		<polymorphic_amplicon>ATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGATAACGAAAATGGTAATTATGAAATCGGTAATCTGAAATTTCGTTTTCTAAGTTTAAGTCATACARCATTTTTGAATTGTGTAGAGCTAAAAGACGACTCAACAACTCTGATAAGACCTTTTTTTTATATTTTGCATAAGCTTTTTTAAGATGAAAAATGAGCAACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11757</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>134671</contig_pos>
        <strand>+</strand>
        <context>GTTCGAAAAA[A/T]ATTCTTAACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGCTTTTTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAA</left_flank>
        <right_flank>ATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCCGAAGGCCCACCAGCCAGTTGTTTGAAGCGCCGGAAATGCGCCAAACAGTCTGGTAATTCTGAAAGTTTTACGAATTGCTCAGCATGTTTTCTACTAGATGTTCATAAGGAAACTCACGAAATGATGTGAACCATCAGTAGTTTCCGATATTCATTTTAAAATGTTCTGTTAAATTAGAAGTAAGAAAAACGAATTTCAACTCGCATCATTCAAAAAAAAATTAGCTGATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGATAACGAAAATGGTAATTATGAAATCGGTAATCTGAAATTTCGTTTTCTAAGTTTAAGTCATACAGCATTTTTGAATTGTGTAGAGCTAAAAGACGACTCAACAACTCTGATAAGACCTTTTTTTTATATTTTGCATAAGCTTTTTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTCGTTCGTCTCCAATTCGAAAACGAGAAGACTATTCTTCAACCACTTCAAGGAATCTGGATCCAGAAAATATCACTGTCACGTCTTCTGGAAGTCAGCATCTGACGACTCCGGAAGTTCGGAATCTGACGTCTTCTGGAAATCAAAACCGGACCGTTTCGAAACTTTTCACTACTCCAAAAGCCCCTAAAAGCTTTACCGAAAGTTCGGAAAAATTCGAAAACGAAAAAAAAGATAAGAAAAAGAAAAAGGAGAAGAAGAAGAGAATTCCAAATCATGGAGAAACATTTGATTGGGCGAATTTCAACGA</canonical>
            <polymorphic>CGCCGAAGGCCCACCAGCCAGTTGTTTGAAGCGCCGGAAATGCGCCAAACAGTCTGGTAATTCTGAAAGTTTTACGAATTGCTCAGCATGTTTTCTACTAGATGTTCATAAGGAAACTCACGAAATGATGTGAACCATCAGTAGTTTCCGATATTCATTTTAAAATGTTCTGTTAAATTAGAAGTAAGAAAAACGAATTTCAACTCGCATCATTCAAAAAAAAATTAGCTGATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGATAACGAAAATGGTAATTATGAAATCGGTAATCTGAAATTTCGTTTTCTAAGTTTAAGTCATACAGCATTTTTGAATTGTGTAGAGCTAAAAGACGACTCAACAACTCTGATAAGACCTTTTTTTTATATTTTGCATAAGCTTTTTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAWATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTCGTTCGTCTCCAATTCGAAAACGAGAAGACTATTCTTCAACCACTTCAAGGAATCTGGATCCAGAAAATATCACTGTCACGTCTTCTGGAAGTCAGCATCTGACGACTCCGGAAGTTCGGAATCTGACGTCTTCTGGAAATCAAAACCGGACCGTTTCGAAACTTTTCACTACTCCAAAAGCCCCTAAAAGCTTTACCGAAAGTTCGGAAAAATTCGAAAACGAAAAAAAAGATAAGAAAAAGAAAAAGGAGAAGAAGAAGAGAATTCCAAATCATGGAGAAACATTTGATTGGGCGAATTTCAACGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>227 195 152 152 110 67 52 34 11</canonical_bands>
                <polymorphic_bands>262 227 195 152 67 52 34 11</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>200 114 110 99 58 56 52 47 38 34 33 27 27 25 22 20 18 11 9</canonical_bands>
                <polymorphic_bands>224 200 99 58 56 52 47 38 34 33 27 27 25 22 20 18 11 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTCAACAACTCTGATAAGACC</pcr_primer_p1>
		<pcr_primer_p2>TCCAGAAGACGTCAATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>GACTCAACAACTCTGATAAGACCTTTTTTTTATATTTTGCATAAGCTTTTTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGA</canonical_amplicon>
		<polymorphic_amplicon>GACTCAACAACTCTGATAAGACCTTTTTTTTATATTTTGCATAAGCTTTTTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAWATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11759</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>134711</contig_pos>
        <strand>+</strand>
        <context>ACTAGAGTAT[C/T]CTCCAAAACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTAT</left_flank>
        <right_flank>CTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCGCCAAACAGTCTGGTAATTCTGAAAGTTTTACGAATTGCTCAGCATGTTTTCTACTAGATGTTCATAAGGAAACTCACGAAATGATGTGAACCATCAGTAGTTTCCGATATTCATTTTAAAATGTTCTGTTAAATTAGAAGTAAGAAAAACGAATTTCAACTCGCATCATTCAAAAAAAAATTAGCTGATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGATAACGAAAATGGTAATTATGAAATCGGTAATCTGAAATTTCGTTTTCTAAGTTTAAGTCATACAGCATTTTTGAATTGTGTAGAGCTAAAAGACGACTCAACAACTCTGATAAGACCTTTTTTTTATATTTTGCATAAGCTTTTTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTCGTTCGTCTCCAATTCGAAAACGAGAAGACTATTCTTCAACCACTTCAAGGAATCTGGATCCAGAAAATATCACTGTCACGTCTTCTGGAAGTCAGCATCTGACGACTCCGGAAGTTCGGAATCTGACGTCTTCTGGAAATCAAAACCGGACCGTTTCGAAACTTTTCACTACTCCAAAAGCCCCTAAAAGCTTTACCGAAAGTTCGGAAAAATTCGAAAACGAAAAAAAAGATAAGAAAAAGAAAAAGGAGAAGAAGAAGAGAATTCCAAATCATGGAGAAACATTTGATTGGGCGAATTTCAACGAAAAGGAGGGTCCGAAGAAATTGAGTTTGGAGAGGAATTAC</canonical>
            <polymorphic>TGCGCCAAACAGTCTGGTAATTCTGAAAGTTTTACGAATTGCTCAGCATGTTTTCTACTAGATGTTCATAAGGAAACTCACGAAATGATGTGAACCATCAGTAGTTTCCGATATTCATTTTAAAATGTTCTGTTAAATTAGAAGTAAGAAAAACGAATTTCAACTCGCATCATTCAAAAAAAAATTAGCTGATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGATAACGAAAATGGTAATTATGAAATCGGTAATCTGAAATTTCGTTTTCTAAGTTTAAGTCATACAGCATTTTTGAATTGTGTAGAGCTAAAAGACGACTCAACAACTCTGATAAGACCTTTTTTTTATATTTTGCATAAGCTTTTTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATYCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTCGTTCGTCTCCAATTCGAAAACGAGAAGACTATTCTTCAACCACTTCAAGGAATCTGGATCCAGAAAATATCACTGTCACGTCTTCTGGAAGTCAGCATCTGACGACTCCGGAAGTTCGGAATCTGACGTCTTCTGGAAATCAAAACCGGACCGTTTCGAAACTTTTCACTACTCCAAAAGCCCCTAAAAGCTTTACCGAAAGTTCGGAAAAATTCGAAAACGAAAAAAAAGATAAGAAAAAGAAAAAGGAGAAGAAGAAGAGAATTCCAAATCATGGAGAAACATTTGATTGGGCGAATTTCAACGAAAAGGAGGGTCCGAAGAAATTGAGTTTGGAGAGGAATTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAAGATGAAAAATGAGCAACT</pcr_primer_p1>
		<pcr_primer_p2>GAGCGCATACTAAAATTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTC</canonical_amplicon>
		<polymorphic_amplicon>TTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATYCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11761</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>134777</contig_pos>
        <strand></strand>
        <context>AAATGAGAAC[C/T]YCGAATTTKT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAAC</left_flank>
        <right_flank>ACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATAAGGAAACTCACGAAATGATGTGAACCATCAGTAGTTTCCGATATTCATTTTAAAATGTTCTGTTAAATTAGAAGTAAGAAAAACGAATTTCAACTCGCATCATTCAAAAAAAAATTAGCTGATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGATAACGAAAATGGTAATTATGAAATCGGTAATCTGAAATTTCGTTTTCTAAGTTTAAGTCATACAGCATTTTTGAATTGTGTAGAGCTAAAAGACGACTCAACAACTCTGATAAGACCTTTTTTTTATATTTTGCATAAGCTTTTTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTCGTTCGTCTCCAATTCGAAAACGAGAAGACTATTCTTCAACCACTTCAAGGAATCTGGATCCAGAAAATATCACTGTCACGTCTTCTGGAAGTCAGCATCTGACGACTCCGGAAGTTCGGAATCTGACGTCTTCTGGAAATCAAAACCGGACCGTTTCGAAACTTTTCACTACTCCAAAAGCCCCTAAAAGCTTTACCGAAAGTTCGGAAAAATTCGAAAACGAAAAAAAAGATAAGAAAAAGAAAAAGGAGAAGAAGAAGAGAATTCCAAATCATGGAGAAACATTTGATTGGGCGAATTTCAACGAAAAGGAGGGTCCGAAGAAATTGAGTTTGGAGAGGAATTACTTGGTTACTGTAGTTTTGGTTTTTTACTTGTGTGCATTTTTCTTTTGATTAGTCAATAAAGATTTT</canonical>
            <polymorphic>CATAAGGAAACTCACGAAATGATGTGAACCATCAGTAGTTTCCGATATTCATTTTAAAATGTTCTGTTAAATTAGAAGTAAGAAAAACGAATTTCAACTCGCATCATTCAAAAAAAAATTAGCTGATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGATAACGAAAATGGTAATTATGAAATCGGTAATCTGAAATTTCGTTTTCTAAGTTTAAGTCATACAGCATTTTTGAATTGTGTAGAGCTAAAAGACGACTCAACAACTCTGATAAGACCTTTTTTTTATATTTTGCATAAGCTTTTTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACYACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTCGTTCGTCTCCAATTCGAAAACGAGAAGACTATTCTTCAACCACTTCAAGGAATCTGGATCCAGAAAATATCACTGTCACGTCTTCTGGAAGTCAGCATCTGACGACTCCGGAAGTTCGGAATCTGACGTCTTCTGGAAATCAAAACCGGACCGTTTCGAAACTTTTCACTACTCCAAAAGCCCCTAAAAGCTTTACCGAAAGTTCGGAAAAATTCGAAAACGAAAAAAAAGATAAGAAAAAGAAAAAGGAGAAGAAGAAGAGAATTCCAAATCATGGAGAAACATTTGATTGGGCGAATTTCAACGAAAAGGAGGGTCCGAAGAAATTGAGTTTGGAGAGGAATTACTTGGTTACTGTAGTTTTGGTTTTTTACTTGTGTGCATTTTTCTTTTGATTAGTCAATAAAGATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>211 130 129 128 128 90 77 32 30 14 12 9 6 2 2</canonical_bands>
                <polymorphic_bands>211 205 130 129 128 90 32 30 14 12 9 6 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAAGATGAAAAATGAGCAACT</pcr_primer_p1>
		<pcr_primer_p2>GAGCGCATACTAAAATTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTC</canonical_amplicon>
		<polymorphic_amplicon>TTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACYACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11763</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>134786</contig_pos>
        <strand>+</strand>
        <context>CYYCGAATTT[G/T]TTGCTTCTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTT</left_flank>
        <right_flank>TTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCT</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCACGAAATGATGTGAACCATCAGTAGTTTCCGATATTCATTTTAAAATGTTCTGTTAAATTAGAAGTAAGAAAAACGAATTTCAACTCGCATCATTCAAAAAAAAATTAGCTGATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGATAACGAAAATGGTAATTATGAAATCGGTAATCTGAAATTTCGTTTTCTAAGTTTAAGTCATACAGCATTTTTGAATTGTGTAGAGCTAAAAGACGACTCAACAACTCTGATAAGACCTTTTTTTTATATTTTGCATAAGCTTTTTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTCGTTCGTCTCCAATTCGAAAACGAGAAGACTATTCTTCAACCACTTCAAGGAATCTGGATCCAGAAAATATCACTGTCACGTCTTCTGGAAGTCAGCATCTGACGACTCCGGAAGTTCGGAATCTGACGTCTTCTGGAAATCAAAACCGGACCGTTTCGAAACTTTTCACTACTCCAAAAGCCCCTAAAAGCTTTACCGAAAGTTCGGAAAAATTCGAAAACGAAAAAAAAGATAAGAAAAAGAAAAAGGAGAAGAAGAAGAGAATTCCAAATCATGGAGAAACATTTGATTGGGCGAATTTCAACGAAAAGGAGGGTCCGAAGAAATTGAGTTTGGAGAGGAATTACTTGGTTACTGTAGTTTTGGTTTTTTACTTGTGTGCATTTTTCTTTTGATTAGTCAATAAAGATTTTTAAAAAATA</canonical>
            <polymorphic>ACTCACGAAATGATGTGAACCATCAGTAGTTTCCGATATTCATTTTAAAATGTTCTGTTAAATTAGAAGTAAGAAAAACGAATTTCAACTCGCATCATTCAAAAAAAAATTAGCTGATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGATAACGAAAATGGTAATTATGAAATCGGTAATCTGAAATTTCGTTTTCTAAGTTTAAGTCATACAGCATTTTTGAATTGTGTAGAGCTAAAAGACGACTCAACAACTCTGATAAGACCTTTTTTTTATATTTTGCATAAGCTTTTTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTKTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTCGTTCGTCTCCAATTCGAAAACGAGAAGACTATTCTTCAACCACTTCAAGGAATCTGGATCCAGAAAATATCACTGTCACGTCTTCTGGAAGTCAGCATCTGACGACTCCGGAAGTTCGGAATCTGACGTCTTCTGGAAATCAAAACCGGACCGTTTCGAAACTTTTCACTACTCCAAAAGCCCCTAAAAGCTTTACCGAAAGTTCGGAAAAATTCGAAAACGAAAAAAAAGATAAGAAAAAGAAAAAGGAGAAGAAGAAGAGAATTCCAAATCATGGAGAAACATTTGATTGGGCGAATTTCAACGAAAAGGAGGGTCCGAAGAAATTGAGTTTGGAGAGGAATTACTTGGTTACTGTAGTTTTGGTTTTTTACTTGTGTGCATTTTTCTTTTGATTAGTCAATAAAGATTTTTAAAAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAAGATGAAAAATGAGCAACT</pcr_primer_p1>
		<pcr_primer_p2>GAGCGCATACTAAAATTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTC</canonical_amplicon>
		<polymorphic_amplicon>TTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTKTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11764</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>134799</contig_pos>
        <strand>+</strand>
        <context>GCTTCTTGKA[G/T]TCTTGCTCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTA</left_flank>
        <right_flank>TCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGAACCATCAGTAGTTTCCGATATTCATTTTAAAATGTTCTGTTAAATTAGAAGTAAGAAAAACGAATTTCAACTCGCATCATTCAAAAAAAAATTAGCTGATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGATAACGAAAATGGTAATTATGAAATCGGTAATCTGAAATTTCGTTTTCTAAGTTTAAGTCATACAGCATTTTTGAATTGTGTAGAGCTAAAAGACGACTCAACAACTCTGATAAGACCTTTTTTTTATATTTTGCATAAGCTTTTTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTCGTTCGTCTCCAATTCGAAAACGAGAAGACTATTCTTCAACCACTTCAAGGAATCTGGATCCAGAAAATATCACTGTCACGTCTTCTGGAAGTCAGCATCTGACGACTCCGGAAGTTCGGAATCTGACGTCTTCTGGAAATCAAAACCGGACCGTTTCGAAACTTTTCACTACTCCAAAAGCCCCTAAAAGCTTTACCGAAAGTTCGGAAAAATTCGAAAACGAAAAAAAAGATAAGAAAAAGAAAAAGGAGAAGAAGAAGAGAATTCCAAATCATGGAGAAACATTTGATTGGGCGAATTTCAACGAAAAGGAGGGTCCGAAGAAATTGAGTTTGGAGAGGAATTACTTGGTTACTGTAGTTTTGGTTTTTTACTTGTGTGCATTTTTCTTTTGATTAGTCAATAAAGATTTTTAAAAAATATGGAAAATTTTGA</canonical>
            <polymorphic>TGTGAACCATCAGTAGTTTCCGATATTCATTTTAAAATGTTCTGTTAAATTAGAAGTAAGAAAAACGAATTTCAACTCGCATCATTCAAAAAAAAATTAGCTGATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGATAACGAAAATGGTAATTATGAAATCGGTAATCTGAAATTTCGTTTTCTAAGTTTAAGTCATACAGCATTTTTGAATTGTGTAGAGCTAAAAGACGACTCAACAACTCTGATAAGACCTTTTTTTTATATTTTGCATAAGCTTTTTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAKTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTCGTTCGTCTCCAATTCGAAAACGAGAAGACTATTCTTCAACCACTTCAAGGAATCTGGATCCAGAAAATATCACTGTCACGTCTTCTGGAAGTCAGCATCTGACGACTCCGGAAGTTCGGAATCTGACGTCTTCTGGAAATCAAAACCGGACCGTTTCGAAACTTTTCACTACTCCAAAAGCCCCTAAAAGCTTTACCGAAAGTTCGGAAAAATTCGAAAACGAAAAAAAAGATAAGAAAAAGAAAAAGGAGAAGAAGAAGAGAATTCCAAATCATGGAGAAACATTTGATTGGGCGAATTTCAACGAAAAGGAGGGTCCGAAGAAATTGAGTTTGGAGAGGAATTACTTGGTTACTGTAGTTTTGGTTTTTTACTTGTGTGCATTTTTCTTTTGATTAGTCAATAAAGATTTTTAAAAAATATGGAAAATTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAAGATGAAAAATGAGCAACT</pcr_primer_p1>
		<pcr_primer_p2>GAGCGCATACTAAAATTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTC</canonical_amplicon>
		<polymorphic_amplicon>TTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAKTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11765</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>134815</contig_pos>
        <strand>+</strand>
        <context>CTCATCGGTA[A/G]TTTTGAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTA</left_flank>
        <right_flank>TTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTCG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCCGATATTCATTTTAAAATGTTCTGTTAAATTAGAAGTAAGAAAAACGAATTTCAACTCGCATCATTCAAAAAAAAATTAGCTGATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGATAACGAAAATGGTAATTATGAAATCGGTAATCTGAAATTTCGTTTTCTAAGTTTAAGTCATACAGCATTTTTGAATTGTGTAGAGCTAAAAGACGACTCAACAACTCTGATAAGACCTTTTTTTTATATTTTGCATAAGCTTTTTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTCGTTCGTCTCCAATTCGAAAACGAGAAGACTATTCTTCAACCACTTCAAGGAATCTGGATCCAGAAAATATCACTGTCACGTCTTCTGGAAGTCAGCATCTGACGACTCCGGAAGTTCGGAATCTGACGTCTTCTGGAAATCAAAACCGGACCGTTTCGAAACTTTTCACTACTCCAAAAGCCCCTAAAAGCTTTACCGAAAGTTCGGAAAAATTCGAAAACGAAAAAAAAGATAAGAAAAAGAAAAAGGAGAAGAAGAAGAGAATTCCAAATCATGGAGAAACATTTGATTGGGCGAATTTCAACGAAAAGGAGGGTCCGAAGAAATTGAGTTTGGAGAGGAATTACTTGGTTACTGTAGTTTTGGTTTTTTACTTGTGTGCATTTTTCTTTTGATTAGTCAATAAAGATTTTTAAAAAATATGGAAAATTTTGAAAAAAAGTTAATTTTC</canonical>
            <polymorphic>TTTCCGATATTCATTTTAAAATGTTCTGTTAAATTAGAAGTAAGAAAAACGAATTTCAACTCGCATCATTCAAAAAAAAATTAGCTGATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGATAACGAAAATGGTAATTATGAAATCGGTAATCTGAAATTTCGTTTTCTAAGTTTAAGTCATACAGCATTTTTGAATTGTGTAGAGCTAAAAGACGACTCAACAACTCTGATAAGACCTTTTTTTTATATTTTGCATAAGCTTTTTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTARTTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTCGTTCGTCTCCAATTCGAAAACGAGAAGACTATTCTTCAACCACTTCAAGGAATCTGGATCCAGAAAATATCACTGTCACGTCTTCTGGAAGTCAGCATCTGACGACTCCGGAAGTTCGGAATCTGACGTCTTCTGGAAATCAAAACCGGACCGTTTCGAAACTTTTCACTACTCCAAAAGCCCCTAAAAGCTTTACCGAAAGTTCGGAAAAATTCGAAAACGAAAAAAAAGATAAGAAAAAGAAAAAGGAGAAGAAGAAGAGAATTCCAAATCATGGAGAAACATTTGATTGGGCGAATTTCAACGAAAAGGAGGGTCCGAAGAAATTGAGTTTGGAGAGGAATTACTTGGTTACTGTAGTTTTGGTTTTTTACTTGTGTGCATTTTTCTTTTGATTAGTCAATAAAGATTTTTAAAAAATATGGAAAATTTTGAAAAAAAGTTAATTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>200 114 110 86 56 52 47 38 34 33 31 28 27 27 25 22 20 17 17 9 7</canonical_bands>
                <polymorphic_bands>200 114 110 86 56 52 47 42 38 34 31 28 27 27 25 22 20 17 17 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAAGATGAAAAATGAGCAACT</pcr_primer_p1>
		<pcr_primer_p2>GAACGAGCGCATACTAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTCGTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTARTTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTCGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11767</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>136571</contig_pos>
        <strand>+</strand>
        <context>TTCAGATTCT[A/G]AAAAATATAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAGATTTTTCGAGAAATTTATGAAAATCAAAAAATCGGTTTCAGATTCT</left_flank>
        <right_flank>AAAAATATAGTGAAACTTTTTCCAGAAAGTGATCCGAATTGAGAATTTGT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATTTGTATCAGTGTCAGTGCAGCGGCTGGATTCTTTTACATGATGCGAAAGAGGAATAGCAATAATGGAGGAGTGATGGTGGTGCATTAAGGATTCGGACATATAAGTGAACTTGAATAAAATGATATAAAAATTACAAATTTTATTCAAAGTAAAATTACAATGTTATTCAAAGTTCATGAAAGGTTCTCTCAACATGAAAACACAAAATCGATTTCCGGAAACCAAAATACAAAATTTATAAAATTTTGATATTCTAAAATACACTTTTTGAAAAATCGACAGATAAGAAGAAACGGATTTTTTTTACCTAATTATTTTCCCGCTTGGTTTTTTGACGAAACCTCAGATTGGGCCAATTTTCAAAAAGTTTCTTAATCAGTTAACTGTGTTAGAAGTATCAGGTTGCGTACTAAATTTTGTCATCACCAATTTTTCAAAAAAAAAACAGATTTTTCGAGAAATTTATGAAAATCAAAAAATCGGTTTCAGATTCTAAAAAATATAGTGAAACTTTTTCCAGAAAGTGATCCGAATTGAGAATTTGTCAGAAAACTCAAAGGGTAACATTAATTATGTGGAATCGTCAATGACCCAAAAATCACGTTGTATCTTTTTTTTTAGAAAAAAATTTTGGGTAAAAAGCCCCTTTAGCAGCTTTCGTTTTTTTCAACTTTTTTTCACGAACAAAAAACCCGTAATTTGACCCGACCCATTCCCAAACATAACCTCTTACCAAGTGTCATGCCTCCATTAAAACACTATAAATAGCGCTCTCCTCCACAGAAACTTTACAATTTGTCTCTTTTTTTGGACCTCTAAAAACCACTGAAAGATGAAGTTCTTGCTCTTTGGAGCATTGCTCATTGGATCCACTCTGTGTCAATCGACACCCCATCGCTATGAAGAGCTCATCGGGAAATTGAACTTTGAACGACGGTTGTTTGCCGAGCGTATGAACATTTCAAACATGTATGAACTGGTGAGTGAGATTTAAT</canonical>
            <polymorphic>TCATTTGTATCAGTGTCAGTGCAGCGGCTGGATTCTTTTACATGATGCGAAAGAGGAATAGCAATAATGGAGGAGTGATGGTGGTGCATTAAGGATTCGGACATATAAGTGAACTTGAATAAAATGATATAAAAATTACAAATTTTATTCAAAGTAAAATTACAATGTTATTCAAAGTTCATGAAAGGTTCTCTCAACATGAAAACACAAAATCGATTTCCGGAAACCAAAATACAAAATTTATAAAATTTTGATATTCTAAAATACACTTTTTGAAAAATCGACAGATAAGAAGAAACGGATTTTTTTTACCTAATTATTTTCCCGCTTGGTTTTTTGACGAAACCTCAGATTGGGCCAATTTTCAAAAAGTTTCTTAATCAGTTAACTGTGTTAGAAGTATCAGGTTGCGTACTAAATTTTGTCATCACCAATTTTTCAAAAAAAAAACAGATTTTTCGAGAAATTTATGAAAATCAAAAAATCGGTTTCAGATTCTRAAAAATATAGTGAAACTTTTTCCAGAAAGTGATCCGAATTGAGAATTTGTCAGAAAACTCAAAGGGTAACATTAATTATGTGGAATCGTCAATGACCCAAAAATCACGTTGTATCTTTTTTTTTAGAAAAAAATTTTGGGTAAAAAGCCCCTTTAGCAGCTTTCGTTTTTTTCAACTTTTTTTCACGAACAAAAAACCCGTAATTTGACCCGACCCATTCCCAAACATAACCTCTTACCAAGTGTCATGCCTCCATTAAAACACTATAAATAGCGCTCTCCTCCACAGAAACTTTACAATTTGTCTCTTTTTTTGGACCTCTAAAAACCACTGAAAGATGAAGTTCTTGCTCTTTGGAGCATTGCTCATTGGATCCACTCTGTGTCAATCGACACCCCATCGCTATGAAGAGCTCATCGGGAAATTGAACTTTGAACGACGGTTGTTTGCCGAGCGTATGAACATTTCAAACATGTATGAACTGGTGAGTGAGATTTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGACGAAACCTCAGAT</pcr_primer_p1>
		<pcr_primer_p2>CACATAATTAATGTTACCCTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGACGAAACCTCAGATTGGGCCAATTTTCAAAAAGTTTCTTAATCAGTTAACTGTGTTAGAAGTATCAGGTTGCGTACTAAATTTTGTCATCACCAATTTTTCAAAAAAAAAACAGATTTTTCGAGAAATTTATGAAAATCAAAAAATCGGTTTCAGATTCTAAAAAATATAGTGAAACTTTTTCCAGAAAGTGATCCGAATTGAGAATTTGTCAGAAAACTCAAAGGGTAACATTAATTATGTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGACGAAACCTCAGATTGGGCCAATTTTCAAAAAGTTTCTTAATCAGTTAACTGTGTTAGAAGTATCAGGTTGCGTACTAAATTTTGTCATCACCAATTTTTCAAAAAAAAAACAGATTTTTCGAGAAATTTATGAAAATCAAAAAATCGGTTTCAGATTCTRAAAAATATAGTGAAACTTTTTCCAGAAAGTGATCCGAATTGAGAATTTGTCAGAAAACTCAAAGGGTAACATTAATTATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11768</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>136500</contig_pos>
        <strand>+</strand>
        <context>ATTTTGTCAT[C/T]ACCAATTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCAGTTAACTGTGTTAGAAGTATCAGGTTGCGTACTAAATTTTGTCAT</left_flank>
        <right_flank>ACCAATTTTTCAAAAAAAAAACAGATTTTTCGAGAAATTTATGAAAATCA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATGATTATACGGATGAGGAGAAACGAAATGCTTCAGTCGGTCTGATCATCATTATTGTGGTTGGAGTGCTCATTTGTATCAGTGTCAGTGCAGCGGCTGGATTCTTTTACATGATGCGAAAGAGGAATAGCAATAATGGAGGAGTGATGGTGGTGCATTAAGGATTCGGACATATAAGTGAACTTGAATAAAATGATATAAAAATTACAAATTTTATTCAAAGTAAAATTACAATGTTATTCAAAGTTCATGAAAGGTTCTCTCAACATGAAAACACAAAATCGATTTCCGGAAACCAAAATACAAAATTTATAAAATTTTGATATTCTAAAATACACTTTTTGAAAAATCGACAGATAAGAAGAAACGGATTTTTTTTACCTAATTATTTTCCCGCTTGGTTTTTTGACGAAACCTCAGATTGGGCCAATTTTCAAAAAGTTTCTTAATCAGTTAACTGTGTTAGAAGTATCAGGTTGCGTACTAAATTTTGTCATCACCAATTTTTCAAAAAAAAAACAGATTTTTCGAGAAATTTATGAAAATCAAAAAATCGGTTTCAGATTCTAAAAAATATAGTGAAACTTTTTCCAGAAAGTGATCCGAATTGAGAATTTGTCAGAAAACTCAAAGGGTAACATTAATTATGTGGAATCGTCAATGACCCAAAAATCACGTTGTATCTTTTTTTTTAGAAAAAAATTTTGGGTAAAAAGCCCCTTTAGCAGCTTTCGTTTTTTTCAACTTTTTTTCACGAACAAAAAACCCGTAATTTGACCCGACCCATTCCCAAACATAACCTCTTACCAAGTGTCATGCCTCCATTAAAACACTATAAATAGCGCTCTCCTCCACAGAAACTTTACAATTTGTCTCTTTTTTTGGACCTCTAAAAACCACTGAAAGATGAAGTTCTTGCTCTTTGGAGCATTGCTCATTGGATCCACTCTGTGTCAATCGACACCCCATCGCTATGAAGAGCTCATCGGGAAATTGAA</canonical>
            <polymorphic>GGATGATTATACGGATGAGGAGAAACGAAATGCTTCAGTCGGTCTGATCATCATTATTGTGGTTGGAGTGCTCATTTGTATCAGTGTCAGTGCAGCGGCTGGATTCTTTTACATGATGCGAAAGAGGAATAGCAATAATGGAGGAGTGATGGTGGTGCATTAAGGATTCGGACATATAAGTGAACTTGAATAAAATGATATAAAAATTACAAATTTTATTCAAAGTAAAATTACAATGTTATTCAAAGTTCATGAAAGGTTCTCTCAACATGAAAACACAAAATCGATTTCCGGAAACCAAAATACAAAATTTATAAAATTTTGATATTCTAAAATACACTTTTTGAAAAATCGACAGATAAGAAGAAACGGATTTTTTTTACCTAATTATTTTCCCGCTTGGTTTTTTGACGAAACCTCAGATTGGGCCAATTTTCAAAAAGTTTCTTAATCAGTTAACTGTGTTAGAAGTATCAGGTTGCGTACTAAATTTTGTCATYACCAATTTTTCAAAAAAAAAACAGATTTTTCGAGAAATTTATGAAAATCAAAAAATCGGTTTCAGATTCTAAAAAATATAGTGAAACTTTTTCCAGAAAGTGATCCGAATTGAGAATTTGTCAGAAAACTCAAAGGGTAACATTAATTATGTGGAATCGTCAATGACCCAAAAATCACGTTGTATCTTTTTTTTTAGAAAAAAATTTTGGGTAAAAAGCCCCTTTAGCAGCTTTCGTTTTTTTCAACTTTTTTTCACGAACAAAAAACCCGTAATTTGACCCGACCCATTCCCAAACATAACCTCTTACCAAGTGTCATGCCTCCATTAAAACACTATAAATAGCGCTCTCCTCCACAGAAACTTTACAATTTGTCTCTTTTTTTGGACCTCTAAAAACCACTGAAAGATGAAGTTCTTGCTCTTTGGAGCATTGCTCATTGGATCCACTCTGTGTCAATCGACACCCCATCGCTATGAAGAGCTCATCGGGAAATTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>125 96 82 79 61 61 59 56 51 47 45 37 35 25 24 22 19 19 16 10 9 7 6 6 3</canonical_bands>
                <polymorphic_bands>125 119 96 79 61 61 59 56 51 47 45 35 25 24 22 19 19 16 10 9 7 6 6 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGATAAGAAGAAACGGATTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTTTCTGGAAAAAGTTTCACTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACAGATAAGAAGAAACGGATTTTTTTTACCTAATTATTTTCCCGCTTGGTTTTTTGACGAAACCTCAGATTGGGCCAATTTTCAAAAAGTTTCTTAATCAGTTAACTGTGTTAGAAGTATCAGGTTGCGTACTAAATTTTGTCATCACCAATTTTTCAAAAAAAAAACAGATTTTTCGAGAAATTTATGAAAATCAAAAAATCGGTTTCAGATTCTAAAAAATATAGTGAAACTTTTTCCAGAAAGT</canonical_amplicon>
		<polymorphic_amplicon>ACAGATAAGAAGAAACGGATTTTTTTTACCTAATTATTTTCCCGCTTGGTTTTTTGACGAAACCTCAGATTGGGCCAATTTTCAAAAAGTTTCTTAATCAGTTAACTGTGTTAGAAGTATCAGGTTGCGTACTAAATTTTGTCATYACCAATTTTTCAAAAAAAAAACAGATTTTTCGAGAAATTTATGAAAATCAAAAAATCGGTTTCAGATTCTAAAAAATATAGTGAAACTTTTTCCAGAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11769</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>136334</contig_pos>
        <strand>+</strand>
        <context>GATATTCTAA[A/G]ATACACTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGATTTCCGGAAACCAAAATACAAAATTTATAAAATTTTGATATTCTAA</left_flank>
        <right_flank>ATACACTTTTTGAAAAATCGACAGATAAGAAGAAACGGATTTTTTTTACC</right_flank>
        <qual_score>149</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGATGACCTTCAAAGATAAGAAACTGATATAAATTCTGGGAAAATAACTAGGAGAAAAAAAGCAACATCAGTTTTCCTGACGACATCAACCGAAACATGATTTTCAAACAACTGCTCCTCGCTTCACTGATCATTGGAACCGTTTTGGCAAAGGATAAGGAATGGGATGATTATACGGATGAGGAGAAACGAAATGCTTCAGTCGGTCTGATCATCATTATTGTGGTTGGAGTGCTCATTTGTATCAGTGTCAGTGCAGCGGCTGGATTCTTTTACATGATGCGAAAGAGGAATAGCAATAATGGAGGAGTGATGGTGGTGCATTAAGGATTCGGACATATAAGTGAACTTGAATAAAATGATATAAAAATTACAAATTTTATTCAAAGTAAAATTACAATGTTATTCAAAGTTCATGAAAGGTTCTCTCAACATGAAAACACAAAATCGATTTCCGGAAACCAAAATACAAAATTTATAAAATTTTGATATTCTAAAATACACTTTTTGAAAAATCGACAGATAAGAAGAAACGGATTTTTTTTACCTAATTATTTTCCCGCTTGGTTTTTTGACGAAACCTCAGATTGGGCCAATTTTCAAAAAGTTTCTTAATCAGTTAACTGTGTTAGAAGTATCAGGTTGCGTACTAAATTTTGTCATCACCAATTTTTCAAAAAAAAAACAGATTTTTCGAGAAATTTATGAAAATCAAAAAATCGGTTTCAGATTCTAAAAAATATAGTGAAACTTTTTCCAGAAAGTGATCCGAATTGAGAATTTGTCAGAAAACTCAAAGGGTAACATTAATTATGTGGAATCGTCAATGACCCAAAAATCACGTTGTATCTTTTTTTTTAGAAAAAAATTTTGGGTAAAAAGCCCCTTTAGCAGCTTTCGTTTTTTTCAACTTTTTTTCACGAACAAAAAACCCGTAATTTGACCCGACCCATTCCCAAACATAACCTCTTACCAAGTGTCATGCCTCCATTAAAACA</canonical>
            <polymorphic>ACAGATGACCTTCAAAGATAAGAAACTGATATAAATTCTGGGAAAATAACTAGGAGAAAAAAAGCAACATCAGTTTTCCTGACGACATCAACCGAAACATGATTTTCAAACAACTGCTCCTCGCTTCACTGATCATTGGAACCGTTTTGGCAAAGGATAAGGAATGGGATGATTATACGGATGAGGAGAAACGAAATGCTTCAGTCGGTCTGATCATCATTATTGTGGTTGGAGTGCTCATTTGTATCAGTGTCAGTGCAGCGGCTGGATTCTTTTACATGATGCGAAAGAGGAATAGCAATAATGGAGGAGTGATGGTGGTGCATTAAGGATTCGGACATATAAGTGAACTTGAATAAAATGATATAAAAATTACAAATTTTATTCAAAGTAAAATTACAATGTTATTCAAAGTTCATGAAAGGTTCTCTCAACATGAAAACACAAAATCGATTTCCGGAAACCAAAATACAAAATTTATAAAATTTTGATATTCTAARATACACTTTTTGAAAAATCGACAGATAAGAAGAAACGGATTTTTTTTACCTAATTATTTTCCCGCTTGGTTTTTTGACGAAACCTCAGATTGGGCCAATTTTCAAAAAGTTTCTTAATCAGTTAACTGTGTTAGAAGTATCAGGTTGCGTACTAAATTTTGTCATCACCAATTTTTCAAAAAAAAAACAGATTTTTCGAGAAATTTATGAAAATCAAAAAATCGGTTTCAGATTCTAAAAAATATAGTGAAACTTTTTCCAGAAAGTGATCCGAATTGAGAATTTGTCAGAAAACTCAAAGGGTAACATTAATTATGTGGAATCGTCAATGACCCAAAAATCACGTTGTATCTTTTTTTTTAGAAAAAAATTTTGGGTAAAAAGCCCCTTTAGCAGCTTTCGTTTTTTTCAACTTTTTTTCACGAACAAAAAACCCGTAATTTGACCCGACCCATTCCCAAACATAACCTCTTACCAAGTGTCATGCCTCCATTAAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTCAAAGTTCATGAAAGGTTC</pcr_primer_p1>
		<pcr_primer_p2>TTAGTACGCAACCTGATACTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATTCAAAGTTCATGAAAGGTTCTCTCAACATGAAAACACAAAATCGATTTCCGGAAACCAAAATACAAAATTTATAAAATTTTGATATTCTAAAATACACTTTTTGAAAAATCGACAGATAAGAAGAAACGGATTTTTTTTACCTAATTATTTTCCCGCTTGGTTTTTTGACGAAACCTCAGATTGGGCCAATTTTCAAAAAGTTTCTTAATCAGTTAACTGTGTTAGAAGTATCAGGTTGCGTACTAA</canonical_amplicon>
		<polymorphic_amplicon>TATTCAAAGTTCATGAAAGGTTCTCTCAACATGAAAACACAAAATCGATTTCCGGAAACCAAAATACAAAATTTATAAAATTTTGATATTCTAARATACACTTTTTGAAAAATCGACAGATAAGAAGAAACGGATTTTTTTTACCTAATTATTTTCCCGCTTGGTTTTTTGACGAAACCTCAGATTGGGCCAATTTTCAAAAAGTTTCTTAATCAGTTAACTGTGTTAGAAGTATCAGGTTGCGTACTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11770</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>136298</contig_pos>
        <strand>+</strand>
        <context>TTTCCGGAAA[C/T]CAAAATACAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTCATGAAAGGTTCTCTCAACATGAAAACACAAAATCGATTTCCGGAAA</left_flank>
        <right_flank>CAAAATACAAAATTTATAAAATTTTGATATTCTAAAATACACTTTTTGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAACTACCTGGATCACGTCTTTATTCCACGTTTACAGATGACCTTCAAAGATAAGAAACTGATATAAATTCTGGGAAAATAACTAGGAGAAAAAAAGCAACATCAGTTTTCCTGACGACATCAACCGAAACATGATTTTCAAACAACTGCTCCTCGCTTCACTGATCATTGGAACCGTTTTGGCAAAGGATAAGGAATGGGATGATTATACGGATGAGGAGAAACGAAATGCTTCAGTCGGTCTGATCATCATTATTGTGGTTGGAGTGCTCATTTGTATCAGTGTCAGTGCAGCGGCTGGATTCTTTTACATGATGCGAAAGAGGAATAGCAATAATGGAGGAGTGATGGTGGTGCATTAAGGATTCGGACATATAAGTGAACTTGAATAAAATGATATAAAAATTACAAATTTTATTCAAAGTAAAATTACAATGTTATTCAAAGTTCATGAAAGGTTCTCTCAACATGAAAACACAAAATCGATTTCCGGAAACCAAAATACAAAATTTATAAAATTTTGATATTCTAAAATACACTTTTTGAAAAATCGACAGATAAGAAGAAACGGATTTTTTTTACCTAATTATTTTCCCGCTTGGTTTTTTGACGAAACCTCAGATTGGGCCAATTTTCAAAAAGTTTCTTAATCAGTTAACTGTGTTAGAAGTATCAGGTTGCGTACTAAATTTTGTCATCACCAATTTTTCAAAAAAAAAACAGATTTTTCGAGAAATTTATGAAAATCAAAAAATCGGTTTCAGATTCTAAAAAATATAGTGAAACTTTTTCCAGAAAGTGATCCGAATTGAGAATTTGTCAGAAAACTCAAAGGGTAACATTAATTATGTGGAATCGTCAATGACCCAAAAATCACGTTGTATCTTTTTTTTTAGAAAAAAATTTTGGGTAAAAAGCCCCTTTAGCAGCTTTCGTTTTTTTCAACTTTTTTTCACGAACAAAAAACCCGTAATTTGACCCGACCCATTCCCAAACA</canonical>
            <polymorphic>CAAAAACTACCTGGATCACGTCTTTATTCCACGTTTACAGATGACCTTCAAAGATAAGAAACTGATATAAATTCTGGGAAAATAACTAGGAGAAAAAAAGCAACATCAGTTTTCCTGACGACATCAACCGAAACATGATTTTCAAACAACTGCTCCTCGCTTCACTGATCATTGGAACCGTTTTGGCAAAGGATAAGGAATGGGATGATTATACGGATGAGGAGAAACGAAATGCTTCAGTCGGTCTGATCATCATTATTGTGGTTGGAGTGCTCATTTGTATCAGTGTCAGTGCAGCGGCTGGATTCTTTTACATGATGCGAAAGAGGAATAGCAATAATGGAGGAGTGATGGTGGTGCATTAAGGATTCGGACATATAAGTGAACTTGAATAAAATGATATAAAAATTACAAATTTTATTCAAAGTAAAATTACAATGTTATTCAAAGTTCATGAAAGGTTCTCTCAACATGAAAACACAAAATCGATTTCCGGAAAYCAAAATACAAAATTTATAAAATTTTGATATTCTAAAATACACTTTTTGAAAAATCGACAGATAAGAAGAAACGGATTTTTTTTACCTAATTATTTTCCCGCTTGGTTTTTTGACGAAACCTCAGATTGGGCCAATTTTCAAAAAGTTTCTTAATCAGTTAACTGTGTTAGAAGTATCAGGTTGCGTACTAAATTTTGTCATCACCAATTTTTCAAAAAAAAAACAGATTTTTCGAGAAATTTATGAAAATCAAAAAATCGGTTTCAGATTCTAAAAAATATAGTGAAACTTTTTCCAGAAAGTGATCCGAATTGAGAATTTGTCAGAAAACTCAAAGGGTAACATTAATTATGTGGAATCGTCAATGACCCAAAAATCACGTTGTATCTTTTTTTTTAGAAAAAAATTTTGGGTAAAAAGCCCCTTTAGCAGCTTTCGTTTTTTTCAACTTTTTTTCACGAACAAAAAACCCGTAATTTGACCCGACCCATTCCCAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTCAAAGTTCATGAAAGGTTC</pcr_primer_p1>
		<pcr_primer_p2>TTAGTACGCAACCTGATACTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATTCAAAGTTCATGAAAGGTTCTCTCAACATGAAAACACAAAATCGATTTCCGGAAACCAAAATACAAAATTTATAAAATTTTGATATTCTAAAATACACTTTTTGAAAAATCGACAGATAAGAAGAAACGGATTTTTTTTACCTAATTATTTTCCCGCTTGGTTTTTTGACGAAACCTCAGATTGGGCCAATTTTCAAAAAGTTTCTTAATCAGTTAACTGTGTTAGAAGTATCAGGTTGCGTACTAA</canonical_amplicon>
		<polymorphic_amplicon>TATTCAAAGTTCATGAAAGGTTCTCTCAACATGAAAACACAAAATCGATTTCCGGAAAYCAAAATACAAAATTTATAAAATTTTGATATTCTAAAATACACTTTTTGAAAAATCGACAGATAAGAAGAAACGGATTTTTTTTACCTAATTATTTTCCCGCTTGGTTTTTTGACGAAACCTCAGATTGGGCCAATTTTCAAAAAGTTTCTTAATCAGTTAACTGTGTTAGAAGTATCAGGTTGCGTACTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11771</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>136281</contig_pos>
        <strand>+</strand>
        <context>TGAAAACACA[A/G]AATCGATTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTACAATGTTATTCAAAGTTCATGAAAGGTTCTCTCAACATGAAAACACA</left_flank>
        <right_flank>AATCGATTTCCGGAAACCAAAATACAAAATTTATAAAATTTTGATATTCT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATAGATGGCGTCACTCAAAAACTACCTGGATCACGTCTTTATTCCACGTTTACAGATGACCTTCAAAGATAAGAAACTGATATAAATTCTGGGAAAATAACTAGGAGAAAAAAAGCAACATCAGTTTTCCTGACGACATCAACCGAAACATGATTTTCAAACAACTGCTCCTCGCTTCACTGATCATTGGAACCGTTTTGGCAAAGGATAAGGAATGGGATGATTATACGGATGAGGAGAAACGAAATGCTTCAGTCGGTCTGATCATCATTATTGTGGTTGGAGTGCTCATTTGTATCAGTGTCAGTGCAGCGGCTGGATTCTTTTACATGATGCGAAAGAGGAATAGCAATAATGGAGGAGTGATGGTGGTGCATTAAGGATTCGGACATATAAGTGAACTTGAATAAAATGATATAAAAATTACAAATTTTATTCAAAGTAAAATTACAATGTTATTCAAAGTTCATGAAAGGTTCTCTCAACATGAAAACACAAAATCGATTTCCGGAAACCAAAATACAAAATTTATAAAATTTTGATATTCTAAAATACACTTTTTGAAAAATCGACAGATAAGAAGAAACGGATTTTTTTTACCTAATTATTTTCCCGCTTGGTTTTTTGACGAAACCTCAGATTGGGCCAATTTTCAAAAAGTTTCTTAATCAGTTAACTGTGTTAGAAGTATCAGGTTGCGTACTAAATTTTGTCATCACCAATTTTTCAAAAAAAAAACAGATTTTTCGAGAAATTTATGAAAATCAAAAAATCGGTTTCAGATTCTAAAAAATATAGTGAAACTTTTTCCAGAAAGTGATCCGAATTGAGAATTTGTCAGAAAACTCAAAGGGTAACATTAATTATGTGGAATCGTCAATGACCCAAAAATCACGTTGTATCTTTTTTTTTAGAAAAAAATTTTGGGTAAAAAGCCCCTTTAGCAGCTTTCGTTTTTTTCAACTTTTTTTCACGAACAAAAAACCCGTAATTTGACC</canonical>
            <polymorphic>AAATAGATGGCGTCACTCAAAAACTACCTGGATCACGTCTTTATTCCACGTTTACAGATGACCTTCAAAGATAAGAAACTGATATAAATTCTGGGAAAATAACTAGGAGAAAAAAAGCAACATCAGTTTTCCTGACGACATCAACCGAAACATGATTTTCAAACAACTGCTCCTCGCTTCACTGATCATTGGAACCGTTTTGGCAAAGGATAAGGAATGGGATGATTATACGGATGAGGAGAAACGAAATGCTTCAGTCGGTCTGATCATCATTATTGTGGTTGGAGTGCTCATTTGTATCAGTGTCAGTGCAGCGGCTGGATTCTTTTACATGATGCGAAAGAGGAATAGCAATAATGGAGGAGTGATGGTGGTGCATTAAGGATTCGGACATATAAGTGAACTTGAATAAAATGATATAAAAATTACAAATTTTATTCAAAGTAAAATTACAATGTTATTCAAAGTTCATGAAAGGTTCTCTCAACATGAAAACACARAATCGATTTCCGGAAACCAAAATACAAAATTTATAAAATTTTGATATTCTAAAATACACTTTTTGAAAAATCGACAGATAAGAAGAAACGGATTTTTTTTACCTAATTATTTTCCCGCTTGGTTTTTTGACGAAACCTCAGATTGGGCCAATTTTCAAAAAGTTTCTTAATCAGTTAACTGTGTTAGAAGTATCAGGTTGCGTACTAAATTTTGTCATCACCAATTTTTCAAAAAAAAAACAGATTTTTCGAGAAATTTATGAAAATCAAAAAATCGGTTTCAGATTCTAAAAAATATAGTGAAACTTTTTCCAGAAAGTGATCCGAATTGAGAATTTGTCAGAAAACTCAAAGGGTAACATTAATTATGTGGAATCGTCAATGACCCAAAAATCACGTTGTATCTTTTTTTTTAGAAAAAAATTTTGGGTAAAAAGCCCCTTTAGCAGCTTTCGTTTTTTTCAACTTTTTTTCACGAACAAAAAACCCGTAATTTGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAGCAATAATGGAGGAGTGAT</pcr_primer_p1>
		<pcr_primer_p2>AAAATCCGTTTCTTCTTATCTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATAGCAATAATGGAGGAGTGATGGTGGTGCATTAAGGATTCGGACATATAAGTGAACTTGAATAAAATGATATAAAAATTACAAATTTTATTCAAAGTAAAATTACAATGTTATTCAAAGTTCATGAAAGGTTCTCTCAACATGAAAACACAAAATCGATTTCCGGAAACCAAAATACAAAATTTATAAAATTTTGATATTCTAAAATACACTTTTTGAAAAATCGACAGATAAGAAGAAACGGATTTT</canonical_amplicon>
		<polymorphic_amplicon>AATAGCAATAATGGAGGAGTGATGGTGGTGCATTAAGGATTCGGACATATAAGTGAACTTGAATAAAATGATATAAAAATTACAAATTTTATTCAAAGTAAAATTACAATGTTATTCAAAGTTCATGAAAGGTTCTCTCAACATGAAAACACARAATCGATTTCCGGAAACCAAAATACAAAATTTATAAAATTTTGATATTCTAAAATACACTTTTTGAAAAATCGACAGATAAGAAGAAACGGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11777</snp_id>
        <super_contig>c005900873.Contig1</super_contig>
        <contig_pos>18930</contig_pos>
        <strand>+</strand>
        <context>ATGGTACTGG[A/G]ACGGATGGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGATAAGTTCAAACATAGGCAGAATAGGTGACTGGAACTGATGGTACTGG</left_flank>
        <right_flank>ACGGATGGTACTGGTGGTGGTTGCTTCTGGATGACAGCATACTCGTTGTT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATGGGGAGCCTGTTCGTCCCGATGTCCCCCATCCTCATTTGCATCTCTCCATCTGCTTGCATCACCCTGGGGCCACCTGCAAAACTTGAATAATTCTTGGACAGATGCGTACTATTTCATTTTTTCCATACTATTGCGCTTTTATTCGCCAGCACCTGTTTGGATATATTCAAAAGTTTTAGTATTAATTCATATTCATTCTGTAACCAGACAGCACTTCAGAAGGCACATGGAAGATTCAAAAATTGTAAAAAAGCTAGGAAATTGAGAACGCGGAGAGAAAAAATGGAGTGAGATGGGACGGGCGGGGAGGAGGAGGACGATGGAATGTTGGGGGGAGATCAAAGAAACAAGTTACTCGTAGCAAACAAAAACAGGAACAGGATTACAAAAAATAATATAGATAACGGACTAAACTACAGATTTGAGGATGCAGATAAAGGATGCAGATAAGTTCAAACATAGGCAGAATAGGTGACTGGAACTGATGGTACTGGAACGGATGGTACTGGTGGTGGTTGCTTCTGGATGACAGCATACTCGTTGTTCCTTGGAGCGCTGGTGTATCGAATCTCCTCCTCATCAACCTTCTTGACACTGTCTTCAATAGTGAACACCTTCTTGGGATCCACCAACAACATGGATTTAGCCTCTGGCATCGGATATGGTTCTGGGACAAGTCCTCGCGCCAACGCGTGCTCTCTTCTGGCGGTCCACGTGTATTTACAACATCCAATGATGATACAGACTCCGATGAAGATGCCAACGATGGAGTATATGGTTATAGAGTAGTCAGATGTGGTCGCGGTGATTTCTATGGATGGGGTGGAGGTGGTGGTGAGGGAGATCTCGCAGAATTCTCCGATGAAGCCGACAGAGCAGGCGCAGAAGACTTTGGGACCGTTTGGGAAGCATTGAGCACCTGGGAAGATTCAGAATTGGTAAAAATAAAACGATCGATGCTCAGACCAGCTGTTCTTCTGAGCAACAAAAGTTCG</canonical>
            <polymorphic>CTATGGGGAGCCTGTTCGTCCCGATGTCCCCCATCCTCATTTGCATCTCTCCATCTGCTTGCATCACCCTGGGGCCACCTGCAAAACTTGAATAATTCTTGGACAGATGCGTACTATTTCATTTTTTCCATACTATTGCGCTTTTATTCGCCAGCACCTGTTTGGATATATTCAAAAGTTTTAGTATTAATTCATATTCATTCTGTAACCAGACAGCACTTCAGAAGGCACATGGAAGATTCAAAAATTGTAAAAAAGCTAGGAAATTGAGAACGCGGAGAGAAAAAATGGAGTGAGATGGGACGGGCGGGGAGGAGGAGGACGATGGAATGTTGGGGGGAGATCAAAGAAACAAGTTACTCGTAGCAAACAAAAACAGGAACAGGATTACAAAAAATAATATAGATAACGGACTAAACTACAGATTTGAGGATGCAGATAAAGGATGCAGATAAGTTCAAACATAGGCAGAATAGGTGACTGGAACTGATGGTACTGGRACGGATGGTACTGGTGGTGGTTGCTTCTGGATGACAGCATACTCGTTGTTCCTTGGAGCGCTGGTGTATCGAATCTCCTCCTCATCAACCTTCTTGACACTGTCTTCAATAGTGAACACCTTCTTGGGATCCACCAACAACATGGATTTAGCCTCTGGCATCGGATATGGTTCTGGGACAAGTCCTCGCGCCAACGCGTGCTCTCTTCTGGCGGTCCACGTGTATTTACAACATCCAATGATGATACAGACTCCGATGAAGATGCCAACGATGGAGTATATGGTTATAGAGTAGTCAGATGTGGTCGCGGTGATTTCTATGGATGGGGTGGAGGTGGTGGTGAGGGAGATCTCGCAGAATTCTCCGATGAAGCCGACAGAGCAGGCGCAGAAGACTTTGGGACCGTTTGGGAAGCATTGAGCACCTGGGAAGATTCAGAATTGGTAAAAATAAAACGATCGATGCTCAGACCAGCTGTTCTTCTGAGCAACAAAAGTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTACTCGTAGCAAACAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>AGACAGTGTCAAGAAGGTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGTTACTCGTAGCAAACAAAAACAGGAACAGGATTACAAAAAATAATATAGATAACGGACTAAACTACAGATTTGAGGATGCAGATAAAGGATGCAGATAAGTTCAAACATAGGCAGAATAGGTGACTGGAACTGATGGTACTGGAACGGATGGTACTGGTGGTGGTTGCTTCTGGATGACAGCATACTCGTTGTTCCTTGGAGCGCTGGTGTATCGAATCTCCTCCTCATCAACCTTCTTGACACTGTCT</canonical_amplicon>
		<polymorphic_amplicon>AGTTACTCGTAGCAAACAAAAACAGGAACAGGATTACAAAAAATAATATAGATAACGGACTAAACTACAGATTTGAGGATGCAGATAAAGGATGCAGATAAGTTCAAACATAGGCAGAATAGGTGACTGGAACTGATGGTACTGGRACGGATGGTACTGGTGGTGGTTGCTTCTGGATGACAGCATACTCGTTGTTCCTTGGAGCGCTGGTGTATCGAATCTCCTCCTCATCAACCTTCTTGACACTGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11778</snp_id>
        <super_contig>c005900873.Contig1</super_contig>
        <contig_pos>19005</contig_pos>
        <strand>+</strand>
        <context>TGTATCGAAT[A/C]TCCTCCTCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCTGGATGACAGCATACTCGTTGTTCCTTGGAGCGCTGGTGTATCGAAT</left_flank>
        <right_flank>TCCTCCTCATCAACCTTCTTGACACTGTCTTCAATAGTGAACACCTTCTT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACCTGCAAAACTTGAATAATTCTTGGACAGATGCGTACTATTTCATTTTTTCCATACTATTGCGCTTTTATTCGCCAGCACCTGTTTGGATATATTCAAAAGTTTTAGTATTAATTCATATTCATTCTGTAACCAGACAGCACTTCAGAAGGCACATGGAAGATTCAAAAATTGTAAAAAAGCTAGGAAATTGAGAACGCGGAGAGAAAAAATGGAGTGAGATGGGACGGGCGGGGAGGAGGAGGACGATGGAATGTTGGGGGGAGATCAAAGAAACAAGTTACTCGTAGCAAACAAAAACAGGAACAGGATTACAAAAAATAATATAGATAACGGACTAAACTACAGATTTGAGGATGCAGATAAAGGATGCAGATAAGTTCAAACATAGGCAGAATAGGTGACTGGAACTGATGGTACTGGAACGGATGGTACTGGTGGTGGTTGCTTCTGGATGACAGCATACTCGTTGTTCCTTGGAGCGCTGGTGTATCGAATCTCCTCCTCATCAACCTTCTTGACACTGTCTTCAATAGTGAACACCTTCTTGGGATCCACCAACAACATGGATTTAGCCTCTGGCATCGGATATGGTTCTGGGACAAGTCCTCGCGCCAACGCGTGCTCTCTTCTGGCGGTCCACGTGTATTTACAACATCCAATGATGATACAGACTCCGATGAAGATGCCAACGATGGAGTATATGGTTATAGAGTAGTCAGATGTGGTCGCGGTGATTTCTATGGATGGGGTGGAGGTGGTGGTGAGGGAGATCTCGCAGAATTCTCCGATGAAGCCGACAGAGCAGGCGCAGAAGACTTTGGGACCGTTTGGGAAGCATTGAGCACCTGGGAAGATTCAGAATTGGTAAAAATAAAACGATCGATGCTCAGACCAGCTGTTCTTCTGAGCAACAAAAGTTCGCCCTCTCTTCCCCTGAAAAAATGACTCACCATTCAGACACGCGTCTTTCACACTACAAGCATCTGGTCGTGGTGC</canonical>
            <polymorphic>CACCTGCAAAACTTGAATAATTCTTGGACAGATGCGTACTATTTCATTTTTTCCATACTATTGCGCTTTTATTCGCCAGCACCTGTTTGGATATATTCAAAAGTTTTAGTATTAATTCATATTCATTCTGTAACCAGACAGCACTTCAGAAGGCACATGGAAGATTCAAAAATTGTAAAAAAGCTAGGAAATTGAGAACGCGGAGAGAAAAAATGGAGTGAGATGGGACGGGCGGGGAGGAGGAGGACGATGGAATGTTGGGGGGAGATCAAAGAAACAAGTTACTCGTAGCAAACAAAAACAGGAACAGGATTACAAAAAATAATATAGATAACGGACTAAACTACAGATTTGAGGATGCAGATAAAGGATGCAGATAAGTTCAAACATAGGCAGAATAGGTGACTGGAACTGATGGTACTGGAACGGATGGTACTGGTGGTGGTTGCTTCTGGATGACAGCATACTCGTTGTTCCTTGGAGCGCTGGTGTATCGAATMTCCTCCTCATCAACCTTCTTGACACTGTCTTCAATAGTGAACACCTTCTTGGGATCCACCAACAACATGGATTTAGCCTCTGGCATCGGATATGGTTCTGGGACAAGTCCTCGCGCCAACGCGTGCTCTCTTCTGGCGGTCCACGTGTATTTACAACATCCAATGATGATACAGACTCCGATGAAGATGCCAACGATGGAGTATATGGTTATAGAGTAGTCAGATGTGGTCGCGGTGATTTCTATGGATGGGGTGGAGGTGGTGGTGAGGGAGATCTCGCAGAATTCTCCGATGAAGCCGACAGAGCAGGCGCAGAAGACTTTGGGACCGTTTGGGAAGCATTGAGCACCTGGGAAGATTCAGAATTGGTAAAAATAAAACGATCGATGCTCAGACCAGCTGTTCTTCTGAGCAACAAAAGTTCGCCCTCTCTTCCCCTGAAAAAATGACTCACCATTCAGACACGCGTCTTTCACACTACAAGCATCTGGTCGTGGTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>333 183 178 163 91 52</canonical_bands>
                <polymorphic_bands>511 183 163 91 52</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>361 333 163 143</canonical_bands>
                <polymorphic_bands>694 163 143</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAAGGATGCAGATAAGTTCAA</pcr_primer_p1>
		<pcr_primer_p2>GACTTGTCCCAGAACCATATC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATAAAGGATGCAGATAAGTTCAAACATAGGCAGAATAGGTGACTGGAACTGATGGTACTGGAACGGATGGTACTGGTGGTGGTTGCTTCTGGATGACAGCATACTCGTTGTTCCTTGGAGCGCTGGTGTATCGAATCTCCTCCTCATCAACCTTCTTGACACTGTCTTCAATAGTGAACACCTTCTTGGGATCCACCAACAACATGGATTTAGCCTCTGGCATCGGATATGGTTCTGGGACAAGTC</canonical_amplicon>
		<polymorphic_amplicon>ATAAAGGATGCAGATAAGTTCAAACATAGGCAGAATAGGTGACTGGAACTGATGGTACTGGAACGGATGGTACTGGTGGTGGTTGCTTCTGGATGACAGCATACTCGTTGTTCCTTGGAGCGCTGGTGTATCGAATMTCCTCCTCATCAACCTTCTTGACACTGTCTTCAATAGTGAACACCTTCTTGGGATCCACCAACAACATGGATTTAGCCTCTGGCATCGGATATGGTTCTGGGACAAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11779</snp_id>
        <super_contig>c005900873.Contig1</super_contig>
        <contig_pos>19044</contig_pos>
        <strand>+</strand>
        <context>CTTCAATAGT[A/G]AACACCTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGTATCGAATCTCCTCCTCATCAACCTTCTTGACACTGTCTTCAATAGT</left_flank>
        <right_flank>AACACCTTCTTGGGATCCACCAACAACATGGATTTAGCCTCTGGCATCGG</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTCATTTTTTCCATACTATTGCGCTTTTATTCGCCAGCACCTGTTTGGATATATTCAAAAGTTTTAGTATTAATTCATATTCATTCTGTAACCAGACAGCACTTCAGAAGGCACATGGAAGATTCAAAAATTGTAAAAAAGCTAGGAAATTGAGAACGCGGAGAGAAAAAATGGAGTGAGATGGGACGGGCGGGGAGGAGGAGGACGATGGAATGTTGGGGGGAGATCAAAGAAACAAGTTACTCGTAGCAAACAAAAACAGGAACAGGATTACAAAAAATAATATAGATAACGGACTAAACTACAGATTTGAGGATGCAGATAAAGGATGCAGATAAGTTCAAACATAGGCAGAATAGGTGACTGGAACTGATGGTACTGGAACGGATGGTACTGGTGGTGGTTGCTTCTGGATGACAGCATACTCGTTGTTCCTTGGAGCGCTGGTGTATCGAATCTCCTCCTCATCAACCTTCTTGACACTGTCTTCAATAGTGAACACCTTCTTGGGATCCACCAACAACATGGATTTAGCCTCTGGCATCGGATATGGTTCTGGGACAAGTCCTCGCGCCAACGCGTGCTCTCTTCTGGCGGTCCACGTGTATTTACAACATCCAATGATGATACAGACTCCGATGAAGATGCCAACGATGGAGTATATGGTTATAGAGTAGTCAGATGTGGTCGCGGTGATTTCTATGGATGGGGTGGAGGTGGTGGTGAGGGAGATCTCGCAGAATTCTCCGATGAAGCCGACAGAGCAGGCGCAGAAGACTTTGGGACCGTTTGGGAAGCATTGAGCACCTGGGAAGATTCAGAATTGGTAAAAATAAAACGATCGATGCTCAGACCAGCTGTTCTTCTGAGCAACAAAAGTTCGCCCTCTCTTCCCCTGAAAAAATGACTCACCATTCAGACACGCGTCTTTCACACTACAAGCATCTGGTCGTGGTGCAGTGAACTGGAATTGTGTGAAGCCGGGAATTTCGCACCT</canonical>
            <polymorphic>TATTTCATTTTTTCCATACTATTGCGCTTTTATTCGCCAGCACCTGTTTGGATATATTCAAAAGTTTTAGTATTAATTCATATTCATTCTGTAACCAGACAGCACTTCAGAAGGCACATGGAAGATTCAAAAATTGTAAAAAAGCTAGGAAATTGAGAACGCGGAGAGAAAAAATGGAGTGAGATGGGACGGGCGGGGAGGAGGAGGACGATGGAATGTTGGGGGGAGATCAAAGAAACAAGTTACTCGTAGCAAACAAAAACAGGAACAGGATTACAAAAAATAATATAGATAACGGACTAAACTACAGATTTGAGGATGCAGATAAAGGATGCAGATAAGTTCAAACATAGGCAGAATAGGTGACTGGAACTGATGGTACTGGAACGGATGGTACTGGTGGTGGTTGCTTCTGGATGACAGCATACTCGTTGTTCCTTGGAGCGCTGGTGTATCGAATCTCCTCCTCATCAACCTTCTTGACACTGTCTTCAATAGTRAACACCTTCTTGGGATCCACCAACAACATGGATTTAGCCTCTGGCATCGGATATGGTTCTGGGACAAGTCCTCGCGCCAACGCGTGCTCTCTTCTGGCGGTCCACGTGTATTTACAACATCCAATGATGATACAGACTCCGATGAAGATGCCAACGATGGAGTATATGGTTATAGAGTAGTCAGATGTGGTCGCGGTGATTTCTATGGATGGGGTGGAGGTGGTGGTGAGGGAGATCTCGCAGAATTCTCCGATGAAGCCGACAGAGCAGGCGCAGAAGACTTTGGGACCGTTTGGGAAGCATTGAGCACCTGGGAAGATTCAGAATTGGTAAAAATAAAACGATCGATGCTCAGACCAGCTGTTCTTCTGAGCAACAAAAGTTCGCCCTCTCTTCCCCTGAAAAAATGACTCACCATTCAGACACGCGTCTTTCACACTACAAGCATCTGGTCGTGGTGCAGTGAACTGGAATTGTGTGAAGCCGGGAATTTCGCACCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>184 105 81 81 67 65 62 47 42 37 33 19 18 18 17 15 15 13 12 11 11 9 6 5 4 4 3 3 3 3 3 2 2</canonical_bands>
                <polymorphic_bands>184 105 81 81 67 65 62 47 42 37 33 19 19 18 18 17 15 13 12 11 11 9 6 5 4 3 3 3 3 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAAGGATGCAGATAAGTTCAA</pcr_primer_p1>
		<pcr_primer_p2>GACTTGTCCCAGAACCATATC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATAAAGGATGCAGATAAGTTCAAACATAGGCAGAATAGGTGACTGGAACTGATGGTACTGGAACGGATGGTACTGGTGGTGGTTGCTTCTGGATGACAGCATACTCGTTGTTCCTTGGAGCGCTGGTGTATCGAATCTCCTCCTCATCAACCTTCTTGACACTGTCTTCAATAGTGAACACCTTCTTGGGATCCACCAACAACATGGATTTAGCCTCTGGCATCGGATATGGTTCTGGGACAAGTC</canonical_amplicon>
		<polymorphic_amplicon>ATAAAGGATGCAGATAAGTTCAAACATAGGCAGAATAGGTGACTGGAACTGATGGTACTGGAACGGATGGTACTGGTGGTGGTTGCTTCTGGATGACAGCATACTCGTTGTTCCTTGGAGCGCTGGTGTATCGAATCTCCTCCTCATCAACCTTCTTGACACTGTCTTCAATAGTRAACACCTTCTTGGGATCCACCAACAACATGGATTTAGCCTCTGGCATCGGATATGGTTCTGGGACAAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11780</snp_id>
        <super_contig>c005900873.Contig1</super_contig>
        <contig_pos>19090</contig_pos>
        <strand>+</strand>
        <context>AGCCTCTGGC[A/C]TCGGATATGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAGTGAACACCTTCTTGGGATCCACCAACAACATGGATTTAGCCTCTGGC</left_flank>
        <right_flank>TCGGATATGGTTCTGGGACAAGTCCTCGCGCCAACGCGTGCTCTCTTCTG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGATATATTCAAAAGTTTTAGTATTAATTCATATTCATTCTGTAACCAGACAGCACTTCAGAAGGCACATGGAAGATTCAAAAATTGTAAAAAAGCTAGGAAATTGAGAACGCGGAGAGAAAAAATGGAGTGAGATGGGACGGGCGGGGAGGAGGAGGACGATGGAATGTTGGGGGGAGATCAAAGAAACAAGTTACTCGTAGCAAACAAAAACAGGAACAGGATTACAAAAAATAATATAGATAACGGACTAAACTACAGATTTGAGGATGCAGATAAAGGATGCAGATAAGTTCAAACATAGGCAGAATAGGTGACTGGAACTGATGGTACTGGAACGGATGGTACTGGTGGTGGTTGCTTCTGGATGACAGCATACTCGTTGTTCCTTGGAGCGCTGGTGTATCGAATCTCCTCCTCATCAACCTTCTTGACACTGTCTTCAATAGTGAACACCTTCTTGGGATCCACCAACAACATGGATTTAGCCTCTGGCATCGGATATGGTTCTGGGACAAGTCCTCGCGCCAACGCGTGCTCTCTTCTGGCGGTCCACGTGTATTTACAACATCCAATGATGATACAGACTCCGATGAAGATGCCAACGATGGAGTATATGGTTATAGAGTAGTCAGATGTGGTCGCGGTGATTTCTATGGATGGGGTGGAGGTGGTGGTGAGGGAGATCTCGCAGAATTCTCCGATGAAGCCGACAGAGCAGGCGCAGAAGACTTTGGGACCGTTTGGGAAGCATTGAGCACCTGGGAAGATTCAGAATTGGTAAAAATAAAACGATCGATGCTCAGACCAGCTGTTCTTCTGAGCAACAAAAGTTCGCCCTCTCTTCCCCTGAAAAAATGACTCACCATTCAGACACGCGTCTTTCACACTACAAGCATCTGGTCGTGGTGCAGTGAACTGGAATTGTGTGAAGCCGGGAATTTCGCACCTGGAGCCGGTGTATCCGTTGGCGCACTCGCAGATCAGTTGCTCGGTT</canonical>
            <polymorphic>TTTGGATATATTCAAAAGTTTTAGTATTAATTCATATTCATTCTGTAACCAGACAGCACTTCAGAAGGCACATGGAAGATTCAAAAATTGTAAAAAAGCTAGGAAATTGAGAACGCGGAGAGAAAAAATGGAGTGAGATGGGACGGGCGGGGAGGAGGAGGACGATGGAATGTTGGGGGGAGATCAAAGAAACAAGTTACTCGTAGCAAACAAAAACAGGAACAGGATTACAAAAAATAATATAGATAACGGACTAAACTACAGATTTGAGGATGCAGATAAAGGATGCAGATAAGTTCAAACATAGGCAGAATAGGTGACTGGAACTGATGGTACTGGAACGGATGGTACTGGTGGTGGTTGCTTCTGGATGACAGCATACTCGTTGTTCCTTGGAGCGCTGGTGTATCGAATCTCCTCCTCATCAACCTTCTTGACACTGTCTTCAATAGTGAACACCTTCTTGGGATCCACCAACAACATGGATTTAGCCTCTGGCMTCGGATATGGTTCTGGGACAAGTCCTCGCGCCAACGCGTGCTCTCTTCTGGCGGTCCACGTGTATTTACAACATCCAATGATGATACAGACTCCGATGAAGATGCCAACGATGGAGTATATGGTTATAGAGTAGTCAGATGTGGTCGCGGTGATTTCTATGGATGGGGTGGAGGTGGTGGTGAGGGAGATCTCGCAGAATTCTCCGATGAAGCCGACAGAGCAGGCGCAGAAGACTTTGGGACCGTTTGGGAAGCATTGAGCACCTGGGAAGATTCAGAATTGGTAAAAATAAAACGATCGATGCTCAGACCAGCTGTTCTTCTGAGCAACAAAAGTTCGCCCTCTCTTCCCCTGAAAAAATGACTCACCATTCAGACACGCGTCTTTCACACTACAAGCATCTGGTCGTGGTGCAGTGAACTGGAATTGTGTGAAGCCGGGAATTTCGCACCTGGAGCCGGTGTATCCGTTGGCGCACTCGCAGATCAGTTGCTCGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGACAGCATACTCGTTGTT</pcr_primer_p1>
		<pcr_primer_p2>CATCTTCATCGGAGTCTGTATC</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>GATGACAGCATACTCGTTGTTCCTTGGAGCGCTGGTGTATCGAATCTCCTCCTCATCAACCTTCTTGACACTGTCTTCAATAGTGAACACCTTCTTGGGATCCACCAACAACATGGATTTAGCCTCTGGCATCGGATATGGTTCTGGGACAAGTCCTCGCGCCAACGCGTGCTCTCTTCTGGCGGTCCACGTGTATTTACAACATCCAATGATGATACAGACTCCGATGAAGATG</canonical_amplicon>
		<polymorphic_amplicon>GATGACAGCATACTCGTTGTTCCTTGGAGCGCTGGTGTATCGAATCTCCTCCTCATCAACCTTCTTGACACTGTCTTCAATAGTGAACACCTTCTTGGGATCCACCAACAACATGGATTTAGCCTCTGGCMTCGGATATGGTTCTGGGACAAGTCCTCGCGCCAACGCGTGCTCTCTTCTGGCGGTCCACGTGTATTTACAACATCCAATGATGATACAGACTCCGATGAAGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11781</snp_id>
        <super_contig>c005900873.Contig1</super_contig>
        <contig_pos>19209</contig_pos>
        <strand>+</strand>
        <context>CGATGGAGTA[G/T]ATGGTTATAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAACATCCAATGATGATACAGACTCCGATGAAGATGCCAACGATGGAGTA</left_flank>
        <right_flank>ATGGTTATAGAGTAGTCAGATGTGGTCGCGGTGATTTCTATGGATGGGGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAAAAAATGGAGTGAGATGGGACGGGCGGGGAGGAGGAGGACGATGGAATGTTGGGGGGAGATCAAAGAAACAAGTTACTCGTAGCAAACAAAAACAGGAACAGGATTACAAAAAATAATATAGATAACGGACTAAACTACAGATTTGAGGATGCAGATAAAGGATGCAGATAAGTTCAAACATAGGCAGAATAGGTGACTGGAACTGATGGTACTGGAACGGATGGTACTGGTGGTGGTTGCTTCTGGATGACAGCATACTCGTTGTTCCTTGGAGCGCTGGTGTATCGAATCTCCTCCTCATCAACCTTCTTGACACTGTCTTCAATAGTGAACACCTTCTTGGGATCCACCAACAACATGGATTTAGCCTCTGGCATCGGATATGGTTCTGGGACAAGTCCTCGCGCCAACGCGTGCTCTCTTCTGGCGGTCCACGTGTATTTACAACATCCAATGATGATACAGACTCCGATGAAGATGCCAACGATGGAGTATATGGTTATAGAGTAGTCAGATGTGGTCGCGGTGATTTCTATGGATGGGGTGGAGGTGGTGGTGAGGGAGATCTCGCAGAATTCTCCGATGAAGCCGACAGAGCAGGCGCAGAAGACTTTGGGACCGTTTGGGAAGCATTGAGCACCTGGGAAGATTCAGAATTGGTAAAAATAAAACGATCGATGCTCAGACCAGCTGTTCTTCTGAGCAACAAAAGTTCGCCCTCTCTTCCCCTGAAAAAATGACTCACCATTCAGACACGCGTCTTTCACACTACAAGCATCTGGTCGTGGTGCAGTGAACTGGAATTGTGTGAAGCCGGGAATTTCGCACCTGGAGCCGGTGTATCCGTTGGCGCACTCGCAGATCAGTTGCTCGGTTGAGTTGGCTTTGAGCCCCGGGTTGTGGATCAGCGAGGAGGCGCAGACGCCATCGTTTTGGCAGGAGCATTTGCGAGGGTCCACGGCTGAAAGAAAAGTGTAACTAGAGGGAAGAGGGGC</canonical>
            <polymorphic>GAGAAAAAATGGAGTGAGATGGGACGGGCGGGGAGGAGGAGGACGATGGAATGTTGGGGGGAGATCAAAGAAACAAGTTACTCGTAGCAAACAAAAACAGGAACAGGATTACAAAAAATAATATAGATAACGGACTAAACTACAGATTTGAGGATGCAGATAAAGGATGCAGATAAGTTCAAACATAGGCAGAATAGGTGACTGGAACTGATGGTACTGGAACGGATGGTACTGGTGGTGGTTGCTTCTGGATGACAGCATACTCGTTGTTCCTTGGAGCGCTGGTGTATCGAATCTCCTCCTCATCAACCTTCTTGACACTGTCTTCAATAGTGAACACCTTCTTGGGATCCACCAACAACATGGATTTAGCCTCTGGCATCGGATATGGTTCTGGGACAAGTCCTCGCGCCAACGCGTGCTCTCTTCTGGCGGTCCACGTGTATTTACAACATCCAATGATGATACAGACTCCGATGAAGATGCCAACGATGGAGTAKATGGTTATAGAGTAGTCAGATGTGGTCGCGGTGATTTCTATGGATGGGGTGGAGGTGGTGGTGAGGGAGATCTCGCAGAATTCTCCGATGAAGCCGACAGAGCAGGCGCAGAAGACTTTGGGACCGTTTGGGAAGCATTGAGCACCTGGGAAGATTCAGAATTGGTAAAAATAAAACGATCGATGCTCAGACCAGCTGTTCTTCTGAGCAACAAAAGTTCGCCCTCTCTTCCCCTGAAAAAATGACTCACCATTCAGACACGCGTCTTTCACACTACAAGCATCTGGTCGTGGTGCAGTGAACTGGAATTGTGTGAAGCCGGGAATTTCGCACCTGGAGCCGGTGTATCCGTTGGCGCACTCGCAGATCAGTTGCTCGGTTGAGTTGGCTTTGAGCCCCGGGTTGTGGATCAGCGAGGAGGCGCAGACGCCATCGTTTTGGCAGGAGCATTTGCGAGGGTCCACGGCTGAAAGAAAAGTGTAACTAGAGGGAAGAGGGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCCACGTGTATTTACAACATC</pcr_primer_p1>
		<pcr_primer_p2>TTTATTTTTACCAATTCTGAATCTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GTCCACGTGTATTTACAACATCCAATGATGATACAGACTCCGATGAAGATGCCAACGATGGAGTATATGGTTATAGAGTAGTCAGATGTGGTCGCGGTGATTTCTATGGATGGGGTGGAGGTGGTGGTGAGGGAGATCTCGCAGAATTCTCCGATGAAGCCGACAGAGCAGGCGCAGAAGACTTTGGGACCGTTTGGGAAGCATTGAGCACCTGGGAAGATTCAGAATTGGTAAAAATAAA</canonical_amplicon>
		<polymorphic_amplicon>GTCCACGTGTATTTACAACATCCAATGATGATACAGACTCCGATGAAGATGCCAACGATGGAGTAKATGGTTATAGAGTAGTCAGATGTGGTCGCGGTGATTTCTATGGATGGGGTGGAGGTGGTGGTGAGGGAGATCTCGCAGAATTCTCCGATGAAGCCGACAGAGCAGGCGCAGAAGACTTTGGGACCGTTTGGGAAGCATTGAGCACCTGGGAAGATTCAGAATTGGTAAAAATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11782</snp_id>
        <super_contig>c005900873.Contig1</super_contig>
        <contig_pos>19248</contig_pos>
        <strand>+</strand>
        <context>CGGTGATTTC[G/T]ATGGATGGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACGATGGAGTATATGGTTATAGAGTAGTCAGATGTGGTCGCGGTGATTTC</left_flank>
        <right_flank>ATGGATGGGGTGGAGGTGGTGGTGAGGGAGATCTCGCAGAATTCTCCGAT</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGACGATGGAATGTTGGGGGGAGATCAAAGAAACAAGTTACTCGTAGCAAACAAAAACAGGAACAGGATTACAAAAAATAATATAGATAACGGACTAAACTACAGATTTGAGGATGCAGATAAAGGATGCAGATAAGTTCAAACATAGGCAGAATAGGTGACTGGAACTGATGGTACTGGAACGGATGGTACTGGTGGTGGTTGCTTCTGGATGACAGCATACTCGTTGTTCCTTGGAGCGCTGGTGTATCGAATCTCCTCCTCATCAACCTTCTTGACACTGTCTTCAATAGTGAACACCTTCTTGGGATCCACCAACAACATGGATTTAGCCTCTGGCATCGGATATGGTTCTGGGACAAGTCCTCGCGCCAACGCGTGCTCTCTTCTGGCGGTCCACGTGTATTTACAACATCCAATGATGATACAGACTCCGATGAAGATGCCAACGATGGAGTATATGGTTATAGAGTAGTCAGATGTGGTCGCGGTGATTTCTATGGATGGGGTGGAGGTGGTGGTGAGGGAGATCTCGCAGAATTCTCCGATGAAGCCGACAGAGCAGGCGCAGAAGACTTTGGGACCGTTTGGGAAGCATTGAGCACCTGGGAAGATTCAGAATTGGTAAAAATAAAACGATCGATGCTCAGACCAGCTGTTCTTCTGAGCAACAAAAGTTCGCCCTCTCTTCCCCTGAAAAAATGACTCACCATTCAGACACGCGTCTTTCACACTACAAGCATCTGGTCGTGGTGCAGTGAACTGGAATTGTGTGAAGCCGGGAATTTCGCACCTGGAGCCGGTGTATCCGTTGGCGCACTCGCAGATCAGTTGCTCGGTTGAGTTGGCTTTGAGCCCCGGGTTGTGGATCAGCGAGGAGGCGCAGACGCCATCGTTTTGGCAGGAGCATTTGCGAGGGTCCACGGCTGAAAGAAAAGTGTAACTAGAGGGAAGAGGGGCTGGGTCCATCCTAGAATGCCTATATTATAGTATCGTTGG</canonical>
            <polymorphic>AGGACGATGGAATGTTGGGGGGAGATCAAAGAAACAAGTTACTCGTAGCAAACAAAAACAGGAACAGGATTACAAAAAATAATATAGATAACGGACTAAACTACAGATTTGAGGATGCAGATAAAGGATGCAGATAAGTTCAAACATAGGCAGAATAGGTGACTGGAACTGATGGTACTGGAACGGATGGTACTGGTGGTGGTTGCTTCTGGATGACAGCATACTCGTTGTTCCTTGGAGCGCTGGTGTATCGAATCTCCTCCTCATCAACCTTCTTGACACTGTCTTCAATAGTGAACACCTTCTTGGGATCCACCAACAACATGGATTTAGCCTCTGGCATCGGATATGGTTCTGGGACAAGTCCTCGCGCCAACGCGTGCTCTCTTCTGGCGGTCCACGTGTATTTACAACATCCAATGATGATACAGACTCCGATGAAGATGCCAACGATGGAGTATATGGTTATAGAGTAGTCAGATGTGGTCGCGGTGATTTCKATGGATGGGGTGGAGGTGGTGGTGAGGGAGATCTCGCAGAATTCTCCGATGAAGCCGACAGAGCAGGCGCAGAAGACTTTGGGACCGTTTGGGAAGCATTGAGCACCTGGGAAGATTCAGAATTGGTAAAAATAAAACGATCGATGCTCAGACCAGCTGTTCTTCTGAGCAACAAAAGTTCGCCCTCTCTTCCCCTGAAAAAATGACTCACCATTCAGACACGCGTCTTTCACACTACAAGCATCTGGTCGTGGTGCAGTGAACTGGAATTGTGTGAAGCCGGGAATTTCGCACCTGGAGCCGGTGTATCCGTTGGCGCACTCGCAGATCAGTTGCTCGGTTGAGTTGGCTTTGAGCCCCGGGTTGTGGATCAGCGAGGAGGCGCAGACGCCATCGTTTTGGCAGGAGCATTTGCGAGGGTCCACGGCTGAAAGAAAAGTGTAACTAGAGGGAAGAGGGGCTGGGTCCATCCTAGAATGCCTATATTATAGTATCGTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCCACGTGTATTTACAACATC</pcr_primer_p1>
		<pcr_primer_p2>TTTATTTTTACCAATTCTGAATCTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GTCCACGTGTATTTACAACATCCAATGATGATACAGACTCCGATGAAGATGCCAACGATGGAGTATATGGTTATAGAGTAGTCAGATGTGGTCGCGGTGATTTCTATGGATGGGGTGGAGGTGGTGGTGAGGGAGATCTCGCAGAATTCTCCGATGAAGCCGACAGAGCAGGCGCAGAAGACTTTGGGACCGTTTGGGAAGCATTGAGCACCTGGGAAGATTCAGAATTGGTAAAAATAAA</canonical_amplicon>
		<polymorphic_amplicon>GTCCACGTGTATTTACAACATCCAATGATGATACAGACTCCGATGAAGATGCCAACGATGGAGTATATGGTTATAGAGTAGTCAGATGTGGTCGCGGTGATTTCKATGGATGGGGTGGAGGTGGTGGTGAGGGAGATCTCGCAGAATTCTCCGATGAAGCCGACAGAGCAGGCGCAGAAGACTTTGGGACCGTTTGGGAAGCATTGAGCACCTGGGAAGATTCAGAATTGGTAAAAATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11784</snp_id>
        <super_contig>c005900873.Contig1</super_contig>
        <contig_pos>19542</contig_pos>
        <strand>+</strand>
        <context>GAATTTCGCA[C/T]CTGGAGCCGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTGGTCGTGGTGCAGTGAACTGGAATTGTGTGAAGCCGGGAATTTCGCA</left_flank>
        <right_flank>CTGGAGCCGGTGTATCCGTTGGCGCACTCGCAGATCAGTTGCTCGGTTGA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAACACCTTCTTGGGATCCACCAACAACATGGATTTAGCCTCTGGCATCGGATATGGTTCTGGGACAAGTCCTCGCGCCAACGCGTGCTCTCTTCTGGCGGTCCACGTGTATTTACAACATCCAATGATGATACAGACTCCGATGAAGATGCCAACGATGGAGTATATGGTTATAGAGTAGTCAGATGTGGTCGCGGTGATTTCTATGGATGGGGTGGAGGTGGTGGTGAGGGAGATCTCGCAGAATTCTCCGATGAAGCCGACAGAGCAGGCGCAGAAGACTTTGGGACCGTTTGGGAAGCATTGAGCACCTGGGAAGATTCAGAATTGGTAAAAATAAAACGATCGATGCTCAGACCAGCTGTTCTTCTGAGCAACAAAAGTTCGCCCTCTCTTCCCCTGAAAAAATGACTCACCATTCAGACACGCGTCTTTCACACTACAAGCATCTGGTCGTGGTGCAGTGAACTGGAATTGTGTGAAGCCGGGAATTTCGCACCTGGAGCCGGTGTATCCGTTGGCGCACTCGCAGATCAGTTGCTCGGTTGAGTTGGCTTTGAGCCCCGGGTTGTGGATCAGCGAGGAGGCGCAGACGCCATCGTTTTGGCAGGAGCATTTGCGAGGGTCCACGGCTGAAAGAAAAGTGTAACTAGAGGGAAGAGGGGCTGGGTCCATCCTAGAATGCCTATATTATAGTATCGTTGGAGTCACATATCATAGACATCCTACAGTAGACATTCTACAGTAAGATACAAAAACATTTTCAGAAGACCGGATCTCGGTTGTCAAGTGTTCGATCCCTCGGAAAATTTTGAAGGGTGTGAATCAGGCTTAGATTGAAAACTTTACATTTACAAAATTTTTCGGAAGTTTCTAGTTTTTCAGCTATTCGCTGTTTTCTGTCTGAAGGACACCTTTTCTGGAGGACAAAGAGTAGGTGTCTTTCAGAAATCGACAAATAACTGAAAAATTAAAAACTTTCAGAATTTCTGTAAATGC</canonical>
            <polymorphic>TGAACACCTTCTTGGGATCCACCAACAACATGGATTTAGCCTCTGGCATCGGATATGGTTCTGGGACAAGTCCTCGCGCCAACGCGTGCTCTCTTCTGGCGGTCCACGTGTATTTACAACATCCAATGATGATACAGACTCCGATGAAGATGCCAACGATGGAGTATATGGTTATAGAGTAGTCAGATGTGGTCGCGGTGATTTCTATGGATGGGGTGGAGGTGGTGGTGAGGGAGATCTCGCAGAATTCTCCGATGAAGCCGACAGAGCAGGCGCAGAAGACTTTGGGACCGTTTGGGAAGCATTGAGCACCTGGGAAGATTCAGAATTGGTAAAAATAAAACGATCGATGCTCAGACCAGCTGTTCTTCTGAGCAACAAAAGTTCGCCCTCTCTTCCCCTGAAAAAATGACTCACCATTCAGACACGCGTCTTTCACACTACAAGCATCTGGTCGTGGTGCAGTGAACTGGAATTGTGTGAAGCCGGGAATTTCGCAYCTGGAGCCGGTGTATCCGTTGGCGCACTCGCAGATCAGTTGCTCGGTTGAGTTGGCTTTGAGCCCCGGGTTGTGGATCAGCGAGGAGGCGCAGACGCCATCGTTTTGGCAGGAGCATTTGCGAGGGTCCACGGCTGAAAGAAAAGTGTAACTAGAGGGAAGAGGGGCTGGGTCCATCCTAGAATGCCTATATTATAGTATCGTTGGAGTCACATATCATAGACATCCTACAGTAGACATTCTACAGTAAGATACAAAAACATTTTCAGAAGACCGGATCTCGGTTGTCAAGTGTTCGATCCCTCGGAAAATTTTGAAGGGTGTGAATCAGGCTTAGATTGAAAACTTTACATTTACAAAATTTTTCGGAAGTTTCTAGTTTTTCAGCTATTCGCTGTTTTCTGTCTGAAGGACACCTTTTCTGGAGGACAAAGAGTAGGTGTCTTTCAGAAATCGACAAATAACTGAAAAATTAAAAACTTTCAGAATTTCTGTAAATGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>435 313 174 64 14</canonical_bands>
                <polymorphic_bands>435 313 174 78</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>506 221 208 65</canonical_bands>
                <polymorphic_bands>571 221 208</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>499 313 188</canonical_bands>
                <polymorphic_bands>687 313</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>105 90 82 81 81 67 64 59 56 48 29 27 19 18 18 17 17 15 14 13 13 11 11 9 6 6 5 4 3 3 3 2 2 2</canonical_bands>
                <polymorphic_bands>105 90 82 81 81 67 64 59 56 48 30 29 27 19 18 18 17 15 14 13 11 11 9 6 6 5 4 3 3 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGACTCACCATTCAGACAC</pcr_primer_p1>
		<pcr_primer_p2>TCCCTCTAGTTACACTTTTCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AATGACTCACCATTCAGACACGCGTCTTTCACACTACAAGCATCTGGTCGTGGTGCAGTGAACTGGAATTGTGTGAAGCCGGGAATTTCGCACCTGGAGCCGGTGTATCCGTTGGCGCACTCGCAGATCAGTTGCTCGGTTGAGTTGGCTTTGAGCCCCGGGTTGTGGATCAGCGAGGAGGCGCAGACGCCATCGTTTTGGCAGGAGCATTTGCGAGGGTCCACGGCTGAAAGAAAAGTGTAACTAGAGGGA</canonical_amplicon>
		<polymorphic_amplicon>AATGACTCACCATTCAGACACGCGTCTTTCACACTACAAGCATCTGGTCGTGGTGCAGTGAACTGGAATTGTGTGAAGCCGGGAATTTCGCAYCTGGAGCCGGTGTATCCGTTGGCGCACTCGCAGATCAGTTGCTCGGTTGAGTTGGCTTTGAGCCCCGGGTTGTGGATCAGCGAGGAGGCGCAGACGCCATCGTTTTGGCAGGAGCATTTGCGAGGGTCCACGGCTGAAAGAAAAGTGTAACTAGAGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11785</snp_id>
        <super_contig>c005900873.Contig1</super_contig>
        <contig_pos>21019</contig_pos>
        <strand>+</strand>
        <context>AAAAATCAAA[G/T]CGAAATCTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATAGTCCAGAATTCGGAAACTTGTATTATCACTAACTTTGAAAAATCAAA</left_flank>
        <right_flank>CGAAATCTGGCTCTGATAAGCCCAAATAACCTGATAAACCCATAAAATGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATGCTGGTTCTCGAGGCGCCCGGGAAGAGATTGAAGTTTCTGGTTGAGTTGCCATCGTTGGTGACAATCTCGAATCGCATGGAGACTCGTTCAGAGCTGATGAACGTTTGCGAGACTTCGACTTTGCAGGAGATGAGTTGTGGGAGAAGGGTTAGTAGTAGTAGGCTGCGCATTTTTCTGGAAATATAGATTTTTATAGATGAAAAGAGGGAAAACAAAGAAATGGAGAGGAAGAGGGGACCAATGGTCCGCGGGAGACCATCTATATGCGGTAAGACGAGGTGGTAATAGTAACCGGAAGAAAGAGAAGGTGGGGGAGTGTGTCTAATACGATGGGGTGAATGACAATGAAACACTCCACCCCTCGAGGGGGCGGGGCGAAAGGAAAACGAACACCTGTTGTTCTCTCTGCGTTCCCTGGGGGTGTGTACTATTTCTGCTTTAGTGATAGTCCAGAATTCGGAAACTTGTATTATCACTAACTTTGAAAAATCAAAGCGAAATCTGGCTCTGATAAGCCCAAATAACCTGATAAACCCATAAAATGACCCTTTTGACTTTTAACTTTGATTCAATTTATCTCATTTCCTGTGAAAGATATCGAAAAGTGTTCAACTGATAAAATTTTTATCATAAAATCAAAAATATTTTATTGGTTAACATTTTTTCGATATCTTTCGCAGGAAACGAGATACATTGGCTAGAGTGTTTAGGGCAAAAACAATCACCTAAAAAGGAAAAAAAAGAAGGACAGGAAGAAAAACTGGATTGCACCAGCACAAATGAATTGCTCAACTGGAAAAAAATTGGGACCTGAAAAATCGATGCCTTAAAATTATTCTCCTGTTTAGTACCTTTTATTCGAATATGCACATTTTGAATGGAGGTAAAAAGGGGAACACACAAAAGGAGCTTGTAAACGAAATTAGTATTGCTCTTATTCATGGTCTTGGCATCTAGAATAGTATAAGGGAGAGCTATAGAGCACAGAGATACAA</canonical>
            <polymorphic>TCATGCTGGTTCTCGAGGCGCCCGGGAAGAGATTGAAGTTTCTGGTTGAGTTGCCATCGTTGGTGACAATCTCGAATCGCATGGAGACTCGTTCAGAGCTGATGAACGTTTGCGAGACTTCGACTTTGCAGGAGATGAGTTGTGGGAGAAGGGTTAGTAGTAGTAGGCTGCGCATTTTTCTGGAAATATAGATTTTTATAGATGAAAAGAGGGAAAACAAAGAAATGGAGAGGAAGAGGGGACCAATGGTCCGCGGGAGACCATCTATATGCGGTAAGACGAGGTGGTAATAGTAACCGGAAGAAAGAGAAGGTGGGGGAGTGTGTCTAATACGATGGGGTGAATGACAATGAAACACTCCACCCCTCGAGGGGGCGGGGCGAAAGGAAAACGAACACCTGTTGTTCTCTCTGCGTTCCCTGGGGGTGTGTACTATTTCTGCTTTAGTGATAGTCCAGAATTCGGAAACTTGTATTATCACTAACTTTGAAAAATCAAAKCGAAATCTGGCTCTGATAAGCCCAAATAACCTGATAAACCCATAAAATGACCCTTTTGACTTTTAACTTTGATTCAATTTATCTCATTTCCTGTGAAAGATATCGAAAAGTGTTCAACTGATAAAATTTTTATCATAAAATCAAAAATATTTTATTGGTTAACATTTTTTCGATATCTTTCGCAGGAAACGAGATACATTGGCTAGAGTGTTTAGGGCAAAAACAATCACCTAAAAAGGAAAAAAAAGAAGGACAGGAAGAAAAACTGGATTGCACCAGCACAAATGAATTGCTCAACTGGAAAAAAATTGGGACCTGAAAAATCGATGCCTTAAAATTATTCTCCTGTTTAGTACCTTTTATTCGAATATGCACATTTTGAATGGAGGTAAAAAGGGGAACACACAAAAGGAGCTTGTAAACGAAATTAGTATTGCTCTTATTCATGGTCTTGGCATCTAGAATAGTATAAGGGAGAGCTATAGAGCACAGAGATACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGCTTTAGTGATAGTCCAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTTTGCCCTAAACACTC</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>CTGCTTTAGTGATAGTCCAGAATTCGGAAACTTGTATTATCACTAACTTTGAAAAATCAAAGCGAAATCTGGCTCTGATAAGCCCAAATAACCTGATAAACCCATAAAATGACCCTTTTGACTTTTAACTTTGATTCAATTTATCTCATTTCCTGTGAAAGATATCGAAAAGTGTTCAACTGATAAAATTTTTATCATAAAATCAAAAATATTTTATTGGTTAACATTTTTTCGATATCTTTCGCAGGAAACGAGATACATTGGCTAGAGTGTTTAGGGCAAAAACA</canonical_amplicon>
		<polymorphic_amplicon>CTGCTTTAGTGATAGTCCAGAATTCGGAAACTTGTATTATCACTAACTTTGAAAAATCAAAKCGAAATCTGGCTCTGATAAGCCCAAATAACCTGATAAACCCATAAAATGACCCTTTTGACTTTTAACTTTGATTCAATTTATCTCATTTCCTGTGAAAGATATCGAAAAGTGTTCAACTGATAAAATTTTTATCATAAAATCAAAAATATTTTATTGGTTAACATTTTTTCGATATCTTTCGCAGGAAACGAGATACATTGGCTAGAGTGTTTAGGGCAAAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11786</snp_id>
        <super_contig>c005900873.Contig1</super_contig>
        <contig_pos>23223</contig_pos>
        <strand></strand>
        <context>tcctcaagtt[C/T]tacaatttgc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTTCGAACGTAGTTAAGTTAGGTACCATTTTGTAGATCTCCTCAAGTT</left_flank>
        <right_flank>TACAATTTGCTTTTTGACAGCTCGGTTGACAAGTATGACTTATAAAACAC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTAGAAGGTCACAAGAGCAGAAAACCTAGTTGGTTGATTTTGGTCATTTTACTTTGAACCATAATGTTAGCGGCTATGGAATTTTCAGAGCCCAGAATGTCGATACTGAAATTTCTAGGAAATTGGGGCCAATCATGAAATTTGAATGAATCAGAAAGTTGTGCAAATTCTGACAAGATGAAGGATCTCGGTAAAAAAATAGGGAGAAAATTCTGGTTTTCACAGGGAGTACTGTAGGCATTATACTTTAGAAGATGCCGAGTCTTACGTAATGTAGAGTTGGAAATTTTTCAAATAGACCTACCTAGATAAATTACGGTCCGGCGCATAGCTCGGTTCAAACTTAATATATCTGGTCGAAATGAAGAATATAATCTAGAATCTGCCGAGGTTTACTTTTCAAAAAATTCCGGGTAGCTCCAGTAGGGCTGCTTTGCTGTCCCATTCGGTTTTCGAACGTAGTTAAGTTAGGTACCATTTTGTAGATCTCCTCAAGTTCTACAATTTGCTTTTTGACAGCTCGGTTGACAAGTATGACTTATAAAACACTTTTGGCTCTTTTCGGGAAGAACGGTCCCAAAATGGGACCACCGGTCCCATCATTGGACCGCCGGTCTCAAGAAGTTCGACAACGGTCCCATTATTCCAACCCCAACTTTACGAGAACGGTCCCAACGGTATGACAATGGTCCCAACCAGGCTTACTGGAAAAACAGAAAAACATTTCAGCGACAAAGTTGAGAATTTTGCTGATAATTGAAAATTGCAGTACTTTTTGAAAAATTGCAGTACTTTTTTTACAAGATATTACTCAGAGTGTTTTTTCTGAAATTATAGGCCTAGGCTGAAACGCCTAATTCACATTATTGTCAGAAAAAGTTGTTTTAGCCTAAGCCTACAATACAAAACCAAAAAACTGAGAATTCTGACTGAATTCCAGATTTTTCGTTTTTCAAAGTACTGCAGTGTTCAATTATCAGCAAAATTCTCAATTTTGCA</canonical>
            <polymorphic>GGTAGAAGGTCACAAGAGCAGAAAACCTAGTTGGTTGATTTTGGTCATTTTACTTTGAACCATAATGTTAGCGGCTATGGAATTTTCAGAGCCCAGAATGTCGATACTGAAATTTCTAGGAAATTGGGGCCAATCATGAAATTTGAATGAATCAGAAAGTTGTGCAAATTCTGACAAGATGAAGGATCTCGGTAAAAAAATAGGGAGAAAATTCTGGTTTTCACAGGGAGTACTGTAGGCATTATACTTTAGAAGATGCCGAGTCTTACGTAATGTAGAGTTGGAAATTTTTCAAATAGACCTACCTAGATAAATTACGGTCCGGCGCATAGCTCGGTTCAAACTTAATATATCTGGTCGAAATGAAGAATATAATCTAGAATCTGCCGAGGTTTACTTTTCAAAAAATTCCGGGTAGCTCCAGTAGGGCTGCTTTGCTGTCCCATTCGGTTTTCGAACGTAGTTAAGTTAGGTACCATTTTGTAGATCTCCTCAAGTTYTACAATTTGCTTTTTGACAGCTCGGTTGACAAGTATGACTTATAAAACACTTTTGGCTCTTTTCGGGAAGAACGGTCCCAAAATGGGACCACCGGTCCCATCATTGGACCGCCGGTCTCAAGAAGTTCGACAACGGTCCCATTATTCCAACCCCAACTTTACGAGAACGGTCCCAACGGTATGACAATGGTCCCAACCAGGCTTACTGGAAAAACAGAAAAACATTTCAGCGACAAAGTTGAGAATTTTGCTGATAATTGAAAATTGCAGTACTTTTTGAAAAATTGCAGTACTTTTTTTACAAGATATTACTCAGAGTGTTTTTTCTGAAATTATAGGCCTAGGCTGAAACGCCTAATTCACATTATTGTCAGAAAAAGTTGTTTTAGCCTAAGCCTACAATACAAAACCAAAAAACTGAGAATTCTGACTGAATTCCAGATTTTTCGTTTTTCAAAGTACTGCAGTGTTCAATTATCAGCAAAATTCTCAATTTTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCTGCCGAGGTTTACTTT</pcr_primer_p1>
		<pcr_primer_p2>CGGAAACTTAGTTGAAAAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>848</pcr_amplicon_size>
		<canonical_amplicon>AATCTGCCGAGGTTTACTTTTCAAAAAATTCCGGGTAGCTCCAGTAGGGCTGCTTTGCTGTCCCATTCGGTTTTCGAACGTAGTTAAGTTAGGTACCATTTTGTAGATCTCCTCAAGTTCTACAATTTGCTTTTTGACAGC</canonical_amplicon>
		<polymorphic_amplicon>AATCTGCCGAGGTTTACTTTTCAAAAAATTCCGGGTAGCTCCAGTAGGGCTGCTTTGCTGTCCCATTCGGTTTTCGAACGTAGTTAAGTTAGGTACCATTTTGTAGATCTCCTCAAGTTYTACAATTTGCTTTTTGACAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11787</snp_id>
        <super_contig>c005900873.Contig1</super_contig>
        <contig_pos>23188</contig_pos>
        <strand></strand>
        <context>cgaacgtagt[T/C]aagttaggta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTAGCTCCAGTAGGGCTGCTTTGCTGTCCCATTCGGTTTTCGAACGTAGT</left_flank>
        <right_flank>AAGTTAGGTACCATTTTGTAGATCTCCTCAAGTTCTACAATTTGCTTTTT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCATTTGACAGATACCGGAACAAAATGGATGGGTAGGTAGAAGGTCACAAGAGCAGAAAACCTAGTTGGTTGATTTTGGTCATTTTACTTTGAACCATAATGTTAGCGGCTATGGAATTTTCAGAGCCCAGAATGTCGATACTGAAATTTCTAGGAAATTGGGGCCAATCATGAAATTTGAATGAATCAGAAAGTTGTGCAAATTCTGACAAGATGAAGGATCTCGGTAAAAAAATAGGGAGAAAATTCTGGTTTTCACAGGGAGTACTGTAGGCATTATACTTTAGAAGATGCCGAGTCTTACGTAATGTAGAGTTGGAAATTTTTCAAATAGACCTACCTAGATAAATTACGGTCCGGCGCATAGCTCGGTTCAAACTTAATATATCTGGTCGAAATGAAGAATATAATCTAGAATCTGCCGAGGTTTACTTTTCAAAAAATTCCGGGTAGCTCCAGTAGGGCTGCTTTGCTGTCCCATTCGGTTTTCGAACGTAGTTAAGTTAGGTACCATTTTGTAGATCTCCTCAAGTTCTACAATTTGCTTTTTGACAGCTCGGTTGACAAGTATGACTTATAAAACACTTTTGGCTCTTTTCGGGAAGAACGGTCCCAAAATGGGACCACCGGTCCCATCATTGGACCGCCGGTCTCAAGAAGTTCGACAACGGTCCCATTATTCCAACCCCAACTTTACGAGAACGGTCCCAACGGTATGACAATGGTCCCAACCAGGCTTACTGGAAAAACAGAAAAACATTTCAGCGACAAAGTTGAGAATTTTGCTGATAATTGAAAATTGCAGTACTTTTTGAAAAATTGCAGTACTTTTTTTACAAGATATTACTCAGAGTGTTTTTTCTGAAATTATAGGCCTAGGCTGAAACGCCTAATTCACATTATTGTCAGAAAAAGTTGTTTTAGCCTAAGCCTACAATACAAAACCAAAAAACTGAGAATTCTGACTGAATTCCAGATTTTTCGTTTTTCAAAGTACTGC</canonical>
            <polymorphic>GCATTTGACAGATACCGGAACAAAATGGATGGGTAGGTAGAAGGTCACAAGAGCAGAAAACCTAGTTGGTTGATTTTGGTCATTTTACTTTGAACCATAATGTTAGCGGCTATGGAATTTTCAGAGCCCAGAATGTCGATACTGAAATTTCTAGGAAATTGGGGCCAATCATGAAATTTGAATGAATCAGAAAGTTGTGCAAATTCTGACAAGATGAAGGATCTCGGTAAAAAAATAGGGAGAAAATTCTGGTTTTCACAGGGAGTACTGTAGGCATTATACTTTAGAAGATGCCGAGTCTTACGTAATGTAGAGTTGGAAATTTTTCAAATAGACCTACCTAGATAAATTACGGTCCGGCGCATAGCTCGGTTCAAACTTAATATATCTGGTCGAAATGAAGAATATAATCTAGAATCTGCCGAGGTTTACTTTTCAAAAAATTCCGGGTAGCTCCAGTAGGGCTGCTTTGCTGTCCCATTCGGTTTTCGAACGTAGTYAAGTTAGGTACCATTTTGTAGATCTCCTCAAGTTCTACAATTTGCTTTTTGACAGCTCGGTTGACAAGTATGACTTATAAAACACTTTTGGCTCTTTTCGGGAAGAACGGTCCCAAAATGGGACCACCGGTCCCATCATTGGACCGCCGGTCTCAAGAAGTTCGACAACGGTCCCATTATTCCAACCCCAACTTTACGAGAACGGTCCCAACGGTATGACAATGGTCCCAACCAGGCTTACTGGAAAAACAGAAAAACATTTCAGCGACAAAGTTGAGAATTTTGCTGATAATTGAAAATTGCAGTACTTTTTGAAAAATTGCAGTACTTTTTTTACAAGATATTACTCAGAGTGTTTTTTCTGAAATTATAGGCCTAGGCTGAAACGCCTAATTCACATTATTGTCAGAAAAAGTTGTTTTAGCCTAAGCCTACAATACAAAACCAAAAAACTGAGAATTCTGACTGAATTCCAGATTTTTCGTTTTTCAAAGTACTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>501 380 119</canonical_bands>
                <polymorphic_bands>620 380</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCTGCCGAGGTTTACTTT</pcr_primer_p1>
		<pcr_primer_p2>CGGAAACTTAGTTGAAAAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>848</pcr_amplicon_size>
		<canonical_amplicon>AATCTGCCGAGGTTTACTTTTCAAAAAATTCCGGGTAGCTCCAGTAGGGCTGCTTTGCTGTCCCATTCGGTTTTCGAACGTAGTTAAGTTAGGTACCATTTTGTAG</canonical_amplicon>
		<polymorphic_amplicon>AATCTGCCGAGGTTTACTTTTCAAAAAATTCCGGGTAGCTCCAGTAGGGCTGCTTTGCTGTCCCATTCGGTTTTCGAACGTAGTYAAGTTAGGTACCATTTTGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11788</snp_id>
        <super_contig>c006000771.Contig2</super_contig>
        <contig_pos>11028</contig_pos>
        <strand>+</strand>
        <context>AGATTAACAA[A/G]CGGCTTACTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATACGTAACCATGAGATAATCTGAAACTGTTTCGTTGTACAGATTAACAA</left_flank>
        <right_flank>CGGCTTACTATATAAGAACGATCAAAATAACCGATCAACCAGATCAACAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTAAGAATTTTCAAAAAAATTTTAGAAAACAAAGTTTTCAGTTTAGGTCTGTTTCACACTCCCCCAAGTTTTCAAAATGATTGGAATTCTGACAGCAGAGCTTCAGACTCTCGAAAATGGCCTAAATAGCCTAAAATCTGCTGAAAACACGTTCTTGTATATCTTATTCACCGGTACTATTTGCTAATTTCAATAATCGACCATAAAATTCAAATAGGAAAGTCAAAATGGGAGTTTTTCAGTTTTGAAAGTCATGTGTTCCATTTTGAAACCTTCAAACTCGCACAGACTGTCTTTGTATAACAGCCTTTTATAAATCATTTAAAAAAGTGAGACCAAAACATTCCCCACTTTATATTTATATATGCATACCGTAATCCTTCAATCCTCTTGACCTCCCAACTGCAAATATTCAATCATCACTGATGATTGATGAGAGGATCCTAATACGTAACCATGAGATAATCTGAAACTGTTTCGTTGTACAGATTAACAAGCGGCTTACTATATAAGAACGATCAAAATAACCGATCAACCAGATCAACATGAATTTGTGTTTTGCTACTTTCCTCCTATTATTTTGCACTGGATGCTATGATGCAGGCCGTGTTAGAAGAGCTCCATGTGATTCAACATACGGAGACTGGGCTGAATGGAGCACTTGTGATAAGGATTGTGGATTTTGTGGGACTCAAACTCGCACCAGAACTTGCACATCAGTCAGTGGTTGTACAGAAGTCACTTGCACGTGAGAAACTGAATAAACTATGAGTTATTTCAAGTTTTTTTTTATTTCAGAGGAGACGCGTCTGAATCTCAAGCATGCAGCACTACAGATGATATTTGTTTGGCACCAAGCCCATCCTGCTGCCCGCACACTTACAAAAAGAAGGCGGACATTTCGGAAAAACGATTTTATTGCGGACTTGAGTAAAGTTTATTAAATAAACTATCTTTTTTTTGCAAATGTGGTTCAAAATACATGATCAAAGCTTCA</canonical>
            <polymorphic>AAACTAAGAATTTTCAAAAAAATTTTAGAAAACAAAGTTTTCAGTTTAGGTCTGTTTCACACTCCCCCAAGTTTTCAAAATGATTGGAATTCTGACAGCAGAGCTTCAGACTCTCGAAAATGGCCTAAATAGCCTAAAATCTGCTGAAAACACGTTCTTGTATATCTTATTCACCGGTACTATTTGCTAATTTCAATAATCGACCATAAAATTCAAATAGGAAAGTCAAAATGGGAGTTTTTCAGTTTTGAAAGTCATGTGTTCCATTTTGAAACCTTCAAACTCGCACAGACTGTCTTTGTATAACAGCCTTTTATAAATCATTTAAAAAAGTGAGACCAAAACATTCCCCACTTTATATTTATATATGCATACCGTAATCCTTCAATCCTCTTGACCTCCCAACTGCAAATATTCAATCATCACTGATGATTGATGAGAGGATCCTAATACGTAACCATGAGATAATCTGAAACTGTTTCGTTGTACAGATTAACAARCGGCTTACTATATAAGAACGATCAAAATAACCGATCAACCAGATCAACATGAATTTGTGTTTTGCTACTTTCCTCCTATTATTTTGCACTGGATGCTATGATGCAGGCCGTGTTAGAAGAGCTCCATGTGATTCAACATACGGAGACTGGGCTGAATGGAGCACTTGTGATAAGGATTGTGGATTTTGTGGGACTCAAACTCGCACCAGAACTTGCACATCAGTCAGTGGTTGTACAGAAGTCACTTGCACGTGAGAAACTGAATAAACTATGAGTTATTTCAAGTTTTTTTTTATTTCAGAGGAGACGCGTCTGAATCTCAAGCATGCAGCACTACAGATGATATTTGTTTGGCACCAAGCCCATCCTGCTGCCCGCACACTTACAAAAAGAAGGCGGACATTTCGGAAAAACGATTTTATTGCGGACTTGAGTAAAGTTTATTAAATAAACTATCTTTTTTTTGCAAATGTGGTTCAAAATACATGATCAAAGCTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>503 328 127 42</canonical_bands>
                <polymorphic_bands>831 127 42</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGGATCCTAATACGTAACCAT</pcr_primer_p1>
		<pcr_primer_p2>CAAAATCCACAATCCTTATCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAGGATCCTAATACGTAACCATGAGATAATCTGAAACTGTTTCGTTGTACAGATTAACAAGCGGCTTACTATATAAGAACGATCAAAATAACCGATCAACCAGATCAACATGAATTTGTGTTTTGCTACTTTCCTCCTATTATTTTGCACTGGATGCTATGATGCAGGCCGTGTTAGAAGAGCTCCATGTGATTCAACATACGGAGACTGGGCTGAATGGAGCACTTGTGATAAGGATTGTGGATTTTG</canonical_amplicon>
		<polymorphic_amplicon>AGAGGATCCTAATACGTAACCATGAGATAATCTGAAACTGTTTCGTTGTACAGATTAACAARCGGCTTACTATATAAGAACGATCAAAATAACCGATCAACCAGATCAACATGAATTTGTGTTTTGCTACTTTCCTCCTATTATTTTGCACTGGATGCTATGATGCAGGCCGTGTTAGAAGAGCTCCATGTGATTCAACATACGGAGACTGGGCTGAATGGAGCACTTGTGATAAGGATTGTGGATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11789</snp_id>
        <super_contig>c006000771.Contig2</super_contig>
        <contig_pos>14064</contig_pos>
        <strand>+</strand>
        <context>CGATGCAATT[A/T]GAGCGGTGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CACATTTTCCATGCACACATGTGACGCTGGAAATGTTGTTCGATGCAATT</left_flank>
        <right_flank>GAGCGGTGCATGGATTACGCATCGAGCAGCGAGGACCAATGAAACCTGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACAACGGCAATAATTGGTCCGAACAAATAGCTAATGTTCGACATTGCTGACTCTTTGATCTAAAACAAAAACTGTGCTATAGTGAAAAAAAAGTAAAAAAATAGAGAAGATGGGGAGAGGCTGGAATGGATGGGAACAAAAGAAAAAATGACAGCTCCTTCTCCAATTGTGTCTCTTCTTTATAAACAAATAAACGAAGTATAAGCCTTTCTGTGTCGCCTCCTCTAGATGAAAAAAATAAGAGAAAGAATCTATCTATCTGCATGAATCAGAAATGCTTACTCTTTGTGAACAAGTCGGTCCAGTATAGCCTCGGTCACACGCGCACTCGTATTTTGCCACCTCTCGATTCTTGTCAATCTGAAATAATTATTTTTAGAAAATATTTAGGAGAGCACATCATTAAATCCCGGAAAATCCATATTACTTACATGAACCACAGGATTCACACATTTTCCATGCACACATGTGACGCTGGAAATGTTGTTCGATGCAATTAGAGCGGTGCATGGATTACGCATCGAGCAGCGAGGACCAATGAAACCTGAAAAATCTGATTTTCAGAAAATTGAGTAGAAAATTAAATATACCATTTTTACAAGTGCACTTGTAGCCGCCAAGGGTGTTGGAACATTCTCCATTGATGCAATTATTTGGATTTTCGCATTCATTGATGTCAGTGGTGCAGTTTCGTCCTGGAAAATTGAAAATTAGAACATTGATGCTTTGTTCAAAATAATTGTTAAATTTTTGAAAAAATTTGAAAGTTCGTATGGCTATTTGTTCAGGAGTTCAAAGTTGGCTGATTCTCATTGAGCAGGTCAAAATACCGTATTTGCTTTAATCCCATTTAATGCTTTTATCCCACGAAAACAGTCAACTTTGAGCTCAATTATTTTCATTCCGGTGAAAGGTGTCAAAATTTTGCAAACTGATGAATTATTCATCATAATATCGCTAATATTTTATCAGTTGACAAAAATTTGATATATTTTACAG</canonical>
            <polymorphic>GACAACGGCAATAATTGGTCCGAACAAATAGCTAATGTTCGACATTGCTGACTCTTTGATCTAAAACAAAAACTGTGCTATAGTGAAAAAAAAGTAAAAAAATAGAGAAGATGGGGAGAGGCTGGAATGGATGGGAACAAAAGAAAAAATGACAGCTCCTTCTCCAATTGTGTCTCTTCTTTATAAACAAATAAACGAAGTATAAGCCTTTCTGTGTCGCCTCCTCTAGATGAAAAAAATAAGAGAAAGAATCTATCTATCTGCATGAATCAGAAATGCTTACTCTTTGTGAACAAGTCGGTCCAGTATAGCCTCGGTCACACGCGCACTCGTATTTTGCCACCTCTCGATTCTTGTCAATCTGAAATAATTATTTTTAGAAAATATTTAGGAGAGCACATCATTAAATCCCGGAAAATCCATATTACTTACATGAACCACAGGATTCACACATTTTCCATGCACACATGTGACGCTGGAAATGTTGTTCGATGCAATTWGAGCGGTGCATGGATTACGCATCGAGCAGCGAGGACCAATGAAACCTGAAAAATCTGATTTTCAGAAAATTGAGTAGAAAATTAAATATACCATTTTTACAAGTGCACTTGTAGCCGCCAAGGGTGTTGGAACATTCTCCATTGATGCAATTATTTGGATTTTCGCATTCATTGATGTCAGTGGTGCAGTTTCGTCCTGGAAAATTGAAAATTAGAACATTGATGCTTTGTTCAAAATAATTGTTAAATTTTTGAAAAAATTTGAAAGTTCGTATGGCTATTTGTTCAGGAGTTCAAAGTTGGCTGATTCTCATTGAGCAGGTCAAAATACCGTATTTGCTTTAATCCCATTTAATGCTTTTATCCCACGAAAACAGTCAACTTTGAGCTCAATTATTTTCATTCCGGTGAAAGGTGTCAAAATTTTGCAAACTGATGAATTATTCATCATAATATCGCTAATATTTTATCAGTTGACAAAAATTTGATATATTTTACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATATTACTTACATGAACCACAGG</pcr_primer_p1>
		<pcr_primer_p2>GAATGCGAAAATCCAAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATATTACTTACATGAACCACAGGATTCACACATTTTCCATGCACACATGTGACGCTGGAAATGTTGTTCGATGCAATTAGAGCGGTGCATGGATTACGCATCGAGCAGCGAGGACCAATGAAACCTGAAAAATCTGATTTTCAGAAAATTGAGTAGAAAATTAAATATACCATTTTTACAAGTGCACTTGTAGCCGCCAAGGGTGTTGGAACATTCTCCATTGATGCAATTATTTGGATTTTCGCATTC</canonical_amplicon>
		<polymorphic_amplicon>CATATTACTTACATGAACCACAGGATTCACACATTTTCCATGCACACATGTGACGCTGGAAATGTTGTTCGATGCAATTWGAGCGGTGCATGGATTACGCATCGAGCAGCGAGGACCAATGAAACCTGAAAAATCTGATTTTCAGAAAATTGAGTAGAAAATTAAATATACCATTTTTACAAGTGCACTTGTAGCCGCCAAGGGTGTTGGAACATTCTCCATTGATGCAATTATTTGGATTTTCGCATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11790</snp_id>
        <super_contig>c006000771.Contig2</super_contig>
        <contig_pos>13951</contig_pos>
        <strand>+</strand>
        <context>TTAGAAAATA[A/T]TTAGGAGAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGCCACCTCTCGATTCTTGTCAATCTGAAATAATTATTTTTAGAAAATA</left_flank>
        <right_flank>TTAGGAGAGCACATCATTAAATCCCGGAAAATCCATATTACTTACATGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCATTCGATTCTGTGTAAACTCGTGTGAACTTGGACTGTAATGGCCATGCATTGCATTGTTGCCCCGAATCACAAAGAAGAGAAGAAGACAGCCCAGAATGGCAAAGACGATGACAACGGCAATAATTGGTCCGAACAAATAGCTAATGTTCGACATTGCTGACTCTTTGATCTAAAACAAAAACTGTGCTATAGTGAAAAAAAAGTAAAAAAATAGAGAAGATGGGGAGAGGCTGGAATGGATGGGAACAAAAGAAAAAATGACAGCTCCTTCTCCAATTGTGTCTCTTCTTTATAAACAAATAAACGAAGTATAAGCCTTTCTGTGTCGCCTCCTCTAGATGAAAAAAATAAGAGAAAGAATCTATCTATCTGCATGAATCAGAAATGCTTACTCTTTGTGAACAAGTCGGTCCAGTATAGCCTCGGTCACACGCGCACTCGTATTTTGCCACCTCTCGATTCTTGTCAATCTGAAATAATTATTTTTAGAAAATATTTAGGAGAGCACATCATTAAATCCCGGAAAATCCATATTACTTACATGAACCACAGGATTCACACATTTTCCATGCACACATGTGACGCTGGAAATGTTGTTCGATGCAATTAGAGCGGTGCATGGATTACGCATCGAGCAGCGAGGACCAATGAAACCTGAAAAATCTGATTTTCAGAAAATTGAGTAGAAAATTAAATATACCATTTTTACAAGTGCACTTGTAGCCGCCAAGGGTGTTGGAACATTCTCCATTGATGCAATTATTTGGATTTTCGCATTCATTGATGTCAGTGGTGCAGTTTCGTCCTGGAAAATTGAAAATTAGAACATTGATGCTTTGTTCAAAATAATTGTTAAATTTTTGAAAAAATTTGAAAGTTCGTATGGCTATTTGTTCAGGAGTTCAAAGTTGGCTGATTCTCATTGAGCAGGTCAAAATACCGTATTTGCTTTAATCCCATTTAATGCTTTTATCCCACGAAAACAGTCAACTTTGA</canonical>
            <polymorphic>GCCATTCGATTCTGTGTAAACTCGTGTGAACTTGGACTGTAATGGCCATGCATTGCATTGTTGCCCCGAATCACAAAGAAGAGAAGAAGACAGCCCAGAATGGCAAAGACGATGACAACGGCAATAATTGGTCCGAACAAATAGCTAATGTTCGACATTGCTGACTCTTTGATCTAAAACAAAAACTGTGCTATAGTGAAAAAAAAGTAAAAAAATAGAGAAGATGGGGAGAGGCTGGAATGGATGGGAACAAAAGAAAAAATGACAGCTCCTTCTCCAATTGTGTCTCTTCTTTATAAACAAATAAACGAAGTATAAGCCTTTCTGTGTCGCCTCCTCTAGATGAAAAAAATAAGAGAAAGAATCTATCTATCTGCATGAATCAGAAATGCTTACTCTTTGTGAACAAGTCGGTCCAGTATAGCCTCGGTCACACGCGCACTCGTATTTTGCCACCTCTCGATTCTTGTCAATCTGAAATAATTATTTTTAGAAAATAWTTAGGAGAGCACATCATTAAATCCCGGAAAATCCATATTACTTACATGAACCACAGGATTCACACATTTTCCATGCACACATGTGACGCTGGAAATGTTGTTCGATGCAATTAGAGCGGTGCATGGATTACGCATCGAGCAGCGAGGACCAATGAAACCTGAAAAATCTGATTTTCAGAAAATTGAGTAGAAAATTAAATATACCATTTTTACAAGTGCACTTGTAGCCGCCAAGGGTGTTGGAACATTCTCCATTGATGCAATTATTTGGATTTTCGCATTCATTGATGTCAGTGGTGCAGTTTCGTCCTGGAAAATTGAAAATTAGAACATTGATGCTTTGTTCAAAATAATTGTTAAATTTTTGAAAAAATTTGAAAGTTCGTATGGCTATTTGTTCAGGAGTTCAAAGTTGGCTGATTCTCATTGAGCAGGTCAAAATACCGTATTTGCTTTAATCCCATTTAATGCTTTTATCCCACGAAAACAGTCAACTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACGAAGTATAAGCCTTTCTGT</pcr_primer_p1>
		<pcr_primer_p2>TGTGGTTCATGTAAGTAATATGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACGAAGTATAAGCCTTTCTGTGTCGCCTCCTCTAGATGAAAAAAATAAGAGAAAGAATCTATCTATCTGCATGAATCAGAAATGCTTACTCTTTGTGAACAAGTCGGTCCAGTATAGCCTCGGTCACACGCGCACTCGTATTTTGCCACCTCTCGATTCTTGTCAATCTGAAATAATTATTTTTAGAAAATATTTAGGAGAGCACATCATTAAATCCCGGAAAATCCATATTACTTACATGAACCACA</canonical_amplicon>
		<polymorphic_amplicon>AAACGAAGTATAAGCCTTTCTGTGTCGCCTCCTCTAGATGAAAAAAATAAGAGAAAGAATCTATCTATCTGCATGAATCAGAAATGCTTACTCTTTGTGAACAAGTCGGTCCAGTATAGCCTCGGTCACACGCGCACTCGTATTTTGCCACCTCTCGATTCTTGTCAATCTGAAATAATTATTTTTAGAAAATAWTTAGGAGAGCACATCATTAAATCCCGGAAAATCCATATTACTTACATGAACCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11791</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>43607</contig_pos>
        <strand>+</strand>
        <context>TTAAAAGTTT[C/T]CGGGGAGAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCACACACAAGCTCGTTCCTGATTTATTTTGGACCAGGGTTTAAAAGTTT</left_flank>
        <right_flank>CGGGGAGAAGGAATTCATGGAAAATAAAATTTGGATCTAGAAGATAGTGG</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGCAATGATCAAAAGCATTTCAAAACTGGGTTTACACCATGCAACCACAGATTTCGACTGATTTGTGAATCATCATGTCCTGTCCAGTTCGCAAAAAAAGAGGTTCATAAAACAGAAATGACCTGAAAACCAAAAAAAAAAACAGAAAACCAGTTACAGATCAAGAAGTTTATGTATCTTGGGTAACTGAAAGCATTAATAAATACCATGGGAATATCGGAAACATTTTGTGTAGATAAATTTCTTTTTAAGGTCTTTTTGAAGGTTCTGGGAATGAGTTTATTTTTGAAGTCCTCTAGGATCAAGATTCAAAGACCTAATCTTGAAAAATACCCAGTTTTGATTTTCAATTTGTTCAAATGAAGTTCTTGCAGCAACAATTTTATTTACAAAAACGGAATACTAAATCGACATCTACAAAGAATTAAGCAATATCACACTCAGAACATCACACACAAGCTCGTTCCTGATTTATTTTGGACCAGGGTTTAAAAGTTTTCGGGGAGAAGGAATTCATGGAAAATAAAATTTGGATCTAGAAGATAGTGGTCATGTCATACTGTAAGTCGAACCACATTAGAGTGGCACCGTAAAGAGTGAAGAAAAGGAAGAAGGAGAGGAAATAGACAACTGGTGGAAGAGTAGACGTTGTGGAGCAGAAGAGGAGAAGACCAGAGCAGAAAAGTATTGATATGTTGGTGGCAATCACTTTTTGGGTGGCATATCGGAAATACTCGTCCTGAAAACAAATACGTCTGGGGAATTTAGAAGTTACTGGTGTATTAATGCCGAACAGGATACAGATACTAGGCTCATACTGATCTATCATTTCTCTTGAACTTATAATCAACTCACTGTGGTCCCTCTTTTCTTATGTTTTCTTGTTCTACACTGTCTATTCTTCAACGGCTTTTTCACTCGATCCGGCACTGTCCATATTGCTTGCTCCGCCCCATCCCATGAATTTGGACCGACCAATCTATACACATATGGAACATT</canonical>
            <polymorphic>CTGCAATGATCAAAAGCATTTCAAAACTGGGTTTACACCATGCAACCACAGATTTCGACTGATTTGTGAATCATCATGTCCTGTCCAGTTCGCAAAAAAAGAGGTTCATAAAACAGAAATGACCTGAAAACCAAAAAAAAAAACAGAAAACCAGTTACAGATCAAGAAGTTTATGTATCTTGGGTAACTGAAAGCATTAATAAATACCATGGGAATATCGGAAACATTTTGTGTAGATAAATTTCTTTTTAAGGTCTTTTTGAAGGTTCTGGGAATGAGTTTATTTTTGAAGTCCTCTAGGATCAAGATTCAAAGACCTAATCTTGAAAAATACCCAGTTTTGATTTTCAATTTGTTCAAATGAAGTTCTTGCAGCAACAATTTTATTTACAAAAACGGAATACTAAATCGACATCTACAAAGAATTAAGCAATATCACACTCAGAACATCACACACAAGCTCGTTCCTGATTTATTTTGGACCAGGGTTTAAAAGTTTYCGGGGAGAAGGAATTCATGGAAAATAAAATTTGGATCTAGAAGATAGTGGTCATGTCATACTGTAAGTCGAACCACATTAGAGTGGCACCGTAAAGAGTGAAGAAAAGGAAGAAGGAGAGGAAATAGACAACTGGTGGAAGAGTAGACGTTGTGGAGCAGAAGAGGAGAAGACCAGAGCAGAAAAGTATTGATATGTTGGTGGCAATCACTTTTTGGGTGGCATATCGGAAATACTCGTCCTGAAAACAAATACGTCTGGGGAATTTAGAAGTTACTGGTGTATTAATGCCGAACAGGATACAGATACTAGGCTCATACTGATCTATCATTTCTCTTGAACTTATAATCAACTCACTGTGGTCCCTCTTTTCTTATGTTTTCTTGTTCTACACTGTCTATTCTTCAACGGCTTTTTCACTCGATCCGGCACTGTCCATATTGCTTGCTCCGCCCCATCCCATGAATTTGGACCGACCAATCTATACACATATGGAACATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTAATCTTGAAAAATACCCAGT</pcr_primer_p1>
		<pcr_primer_p2>CAGTATGACATGACCACTATCTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCTAATCTTGAAAAATACCCAGTTTTGATTTTCAATTTGTTCAAATGAAGTTCTTGCAGCAACAATTTTATTTACAAAAACGGAATACTAAATCGACATCTACAAAGAATTAAGCAATATCACACTCAGAACATCACACACAAGCTCGTTCCTGATTTATTTTGGACCAGGGTTTAAAAGTTTTCGGGGAGAAGGAATTCATGGAAAATAAAATTTGGATCTAGAAGATAGTGGTCATGTCATACTG</canonical_amplicon>
		<polymorphic_amplicon>CCTAATCTTGAAAAATACCCAGTTTTGATTTTCAATTTGTTCAAATGAAGTTCTTGCAGCAACAATTTTATTTACAAAAACGGAATACTAAATCGACATCTACAAAGAATTAAGCAATATCACACTCAGAACATCACACACAAGCTCGTTCCTGATTTATTTTGGACCAGGGTTTAAAAGTTTYCGGGGAGAAGGAATTCATGGAAAATAAAATTTGGATCTAGAAGATAGTGGTCATGTCATACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11792</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>43486</contig_pos>
        <strand>+</strand>
        <context>CTTGCAGCAA[C/T]AATTTTATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATACCCAGTTTTGATTTTCAATTTGTTCAAATGAAGTTCTTGCAGCAA</left_flank>
        <right_flank>AATTTTATTTACAAAAACGGAATACTAAATCGACATCTACAAAGAATTAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTTTTAAGCAACTCAACAAACTTGAAACTTTTTTTCATTTAAAACATTTTGGTTGAAATCAAACAATCGAAACCAAAACTGGACAATCTCAATGTTCTGTTCAAAATAAGAGTTAACCTGCAATGATCAAAAGCATTTCAAAACTGGGTTTACACCATGCAACCACAGATTTCGACTGATTTGTGAATCATCATGTCCTGTCCAGTTCGCAAAAAAAGAGGTTCATAAAACAGAAATGACCTGAAAACCAAAAAAAAAAACAGAAAACCAGTTACAGATCAAGAAGTTTATGTATCTTGGGTAACTGAAAGCATTAATAAATACCATGGGAATATCGGAAACATTTTGTGTAGATAAATTTCTTTTTAAGGTCTTTTTGAAGGTTCTGGGAATGAGTTTATTTTTGAAGTCCTCTAGGATCAAGATTCAAAGACCTAATCTTGAAAAATACCCAGTTTTGATTTTCAATTTGTTCAAATGAAGTTCTTGCAGCAACAATTTTATTTACAAAAACGGAATACTAAATCGACATCTACAAAGAATTAAGCAATATCACACTCAGAACATCACACACAAGCTCGTTCCTGATTTATTTTGGACCAGGGTTTAAAAGTTTTCGGGGAGAAGGAATTCATGGAAAATAAAATTTGGATCTAGAAGATAGTGGTCATGTCATACTGTAAGTCGAACCACATTAGAGTGGCACCGTAAAGAGTGAAGAAAAGGAAGAAGGAGAGGAAATAGACAACTGGTGGAAGAGTAGACGTTGTGGAGCAGAAGAGGAGAAGACCAGAGCAGAAAAGTATTGATATGTTGGTGGCAATCACTTTTTGGGTGGCATATCGGAAATACTCGTCCTGAAAACAAATACGTCTGGGGAATTTAGAAGTTACTGGTGTATTAATGCCGAACAGGATACAGATACTAGGCTCATACTGATCTATCATTTCTCTTGAACTTATAATCAACTCACTGTGGTCCCTCTTTTCTTATGTT</canonical>
            <polymorphic>AAAATTTTTAAGCAACTCAACAAACTTGAAACTTTTTTTCATTTAAAACATTTTGGTTGAAATCAAACAATCGAAACCAAAACTGGACAATCTCAATGTTCTGTTCAAAATAAGAGTTAACCTGCAATGATCAAAAGCATTTCAAAACTGGGTTTACACCATGCAACCACAGATTTCGACTGATTTGTGAATCATCATGTCCTGTCCAGTTCGCAAAAAAAGAGGTTCATAAAACAGAAATGACCTGAAAACCAAAAAAAAAAACAGAAAACCAGTTACAGATCAAGAAGTTTATGTATCTTGGGTAACTGAAAGCATTAATAAATACCATGGGAATATCGGAAACATTTTGTGTAGATAAATTTCTTTTTAAGGTCTTTTTGAAGGTTCTGGGAATGAGTTTATTTTTGAAGTCCTCTAGGATCAAGATTCAAAGACCTAATCTTGAAAAATACCCAGTTTTGATTTTCAATTTGTTCAAATGAAGTTCTTGCAGCAAYAATTTTATTTACAAAAACGGAATACTAAATCGACATCTACAAAGAATTAAGCAATATCACACTCAGAACATCACACACAAGCTCGTTCCTGATTTATTTTGGACCAGGGTTTAAAAGTTTTCGGGGAGAAGGAATTCATGGAAAATAAAATTTGGATCTAGAAGATAGTGGTCATGTCATACTGTAAGTCGAACCACATTAGAGTGGCACCGTAAAGAGTGAAGAAAAGGAAGAAGGAGAGGAAATAGACAACTGGTGGAAGAGTAGACGTTGTGGAGCAGAAGAGGAGAAGACCAGAGCAGAAAAGTATTGATATGTTGGTGGCAATCACTTTTTGGGTGGCATATCGGAAATACTCGTCCTGAAAACAAATACGTCTGGGGAATTTAGAAGTTACTGGTGTATTAATGCCGAACAGGATACAGATACTAGGCTCATACTGATCTATCATTTCTCTTGAACTTATAATCAACTCACTGTGGTCCCTCTTTTCTTATGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTAATCTTGAAAAATACCCAGT</pcr_primer_p1>
		<pcr_primer_p2>CAGTATGACATGACCACTATCTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCTAATCTTGAAAAATACCCAGTTTTGATTTTCAATTTGTTCAAATGAAGTTCTTGCAGCAACAATTTTATTTACAAAAACGGAATACTAAATCGACATCTACAAAGAATTAAGCAATATCACACTCAGAACATCACACACAAGCTCGTTCCTGATTTATTTTGGACCAGGGTTTAAAAGTTTTCGGGGAGAAGGAATTCATGGAAAATAAAATTTGGATCTAGAAGATAGTGGTCATGTCATACTG</canonical_amplicon>
		<polymorphic_amplicon>CCTAATCTTGAAAAATACCCAGTTTTGATTTTCAATTTGTTCAAATGAAGTTCTTGCAGCAAYAATTTTATTTACAAAAACGGAATACTAAATCGACATCTACAAAGAATTAAGCAATATCACACTCAGAACATCACACACAAGCTCGTTCCTGATTTATTTTGGACCAGGGTTTAAAAGTTTTCGGGGAGAAGGAATTCATGGAAAATAAAATTTGGATCTAGAAGATAGTGGTCATGTCATACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11796</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>316375</contig_pos>
        <strand>+</strand>
        <context>TTTTAACTGC[A/G]TCTTCTGATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGATCAATCTCATATGTTCCTTTAATATAATCTCTGGATCTTTTAACTGC</left_flank>
        <right_flank>TCTTCTGATACATAGTCTAATAGTTTGAAGTTGTCGGAAATCAATTCATC</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGGGCAGCAATCAGGCATCCAGAATCCACCGGATGCCCTCCGATTACTGTAGGCTCTTTATTGAGCCTCCAAAAGTTGACATTCAGAATCGATGCGTGTCTCTGGACTTCAGCAAGTGTTGCATTCAAATATGGAGTCTCATTTTTATCTTTCAGTGATAGATGTCGAGATGCTCCGTTGGTCACTTTCATCAATTCGTTTCTTAATTTATCCATCACATCTGGATTGTTAAGGAATCTGATAAAAGCAGAAATCAGCGTCATTGTTGTAGTCTCCTGACCAGTTATCCATAGATCTAACACTAACATCTTCAGGTTTTCTTCACTGAAATCAAATCTGGGGTAAATAAATAAAAGTTCTATTAGTATCCCTCACTTGTAAACTTCACTTTTTGGGTCTTGCTTCATTTTCAGCAAGAACGCATCCACAAAGTCTTCTACGTTGTCAGGATCAATCTCATATGTTCCTTTAATATAATCTCTGGATCTTTTAACTGCGTCTTCTGATACATAGTCTAATAGTTTGAAGTTGTCGGAAATCAATTCATCGAAACTTTTCGAAAATAATGTTTTCAGAATCCACACTGGAAGTACCAAATAAGTGGCTGAAAACTTTTCCATGGATTTGTCTACCATATGCTTGAAAGTCAAAAATCTATTCTTGTTTCTCTGAAAAAATAAGTTGAATGCATATTGCAAAAAATTCCAGCTGTACCTCATCAAACCGAAAACCCATGAGCATGTTGTTGATGATACTTCCAACTGTCAAGTCAAAAAATACATTGACAGTTTCCACAGCAGTTCCGTTGACCGACTTGGCATCAAGCTCTGAGCATCTGAGAGGATACATATATGGTTTTTGTTAACTATTTTTCAGAATATAAAGATTACCTTGTATTAAGTTCAGCTATAATTTTCTCCTCCATTAAATCTCTTCCCATTCCCATATTTCTCATTGTCAACATTGAAAACCTTCTCAGTTCTTGCCACTTGTCTCCA</canonical>
            <polymorphic>GTTGGGCAGCAATCAGGCATCCAGAATCCACCGGATGCCCTCCGATTACTGTAGGCTCTTTATTGAGCCTCCAAAAGTTGACATTCAGAATCGATGCGTGTCTCTGGACTTCAGCAAGTGTTGCATTCAAATATGGAGTCTCATTTTTATCTTTCAGTGATAGATGTCGAGATGCTCCGTTGGTCACTTTCATCAATTCGTTTCTTAATTTATCCATCACATCTGGATTGTTAAGGAATCTGATAAAAGCAGAAATCAGCGTCATTGTTGTAGTCTCCTGACCAGTTATCCATAGATCTAACACTAACATCTTCAGGTTTTCTTCACTGAAATCAAATCTGGGGTAAATAAATAAAAGTTCTATTAGTATCCCTCACTTGTAAACTTCACTTTTTGGGTCTTGCTTCATTTTCAGCAAGAACGCATCCACAAAGTCTTCTACGTTGTCAGGATCAATCTCATATGTTCCTTTAATATAATCTCTGGATCTTTTAACTGCRTCTTCTGATACATAGTCTAATAGTTTGAAGTTGTCGGAAATCAATTCATCGAAACTTTTCGAAAATAATGTTTTCAGAATCCACACTGGAAGTACCAAATAAGTGGCTGAAAACTTTTCCATGGATTTGTCTACCATATGCTTGAAAGTCAAAAATCTATTCTTGTTTCTCTGAAAAAATAAGTTGAATGCATATTGCAAAAAATTCCAGCTGTACCTCATCAAACCGAAAACCCATGAGCATGTTGTTGATGATACTTCCAACTGTCAAGTCAAAAAATACATTGACAGTTTCCACAGCAGTTCCGTTGACCGACTTGGCATCAAGCTCTGAGCATCTGAGAGGATACATATATGGTTTTTGTTAACTATTTTTCAGAATATAAAGATTACCTTGTATTAAGTTCAGCTATAATTTTCTCCTCCATTAAATCTCTTCCCATTCCCATATTTCTCATTGTCAACATTGAAAACCTTCTCAGTTCTTGCCACTTGTCTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAGGATCAATCTCATATGTTC</pcr_primer_p1>
		<pcr_primer_p2>GCAATATGCATTCAACTTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GTCAGGATCAATCTCATATGTTCCTTTAATATAATCTCTGGATCTTTTAACTGCGTCTTCTGATACATAGTCTAATAGTTTGAAGTTGTCGGAAATCAATTCATCGAAACTTTTCGAAAATAATGTTTTCAGAATCCACACTGGAAGTACCAAATAAGTGGCTGAAAACTTTTCCATGGATTTGTCTACCATATGCTTGAAAGTCAAAAATCTATTCTTGTTTCTCTGAAAAAATAAGTTGAATGCATATTGC</canonical_amplicon>
		<polymorphic_amplicon>GTCAGGATCAATCTCATATGTTCCTTTAATATAATCTCTGGATCTTTTAACTGCRTCTTCTGATACATAGTCTAATAGTTTGAAGTTGTCGGAAATCAATTCATCGAAACTTTTCGAAAATAATGTTTTCAGAATCCACACTGGAAGTACCAAATAAGTGGCTGAAAACTTTTCCATGGATTTGTCTACCATATGCTTGAAAGTCAAAAATCTATTCTTGTTTCTCTGAAAAAATAAGTTGAATGCATATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11797</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>316209</contig_pos>
        <strand>+</strand>
        <context>TCACTGAAAT[A/C]AAATCTGGGG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTTATCCATAGATCTAACACTAACATCTTCAGGTTTTCTTCACTGAAAT</left_flank>
        <right_flank>AAATCTGGGGTAAATAAATAAAAGTTCTATTAGTATCCCTCACTTGTAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCACCAAATAAAGCTCTGCTTTGGCCAGAGCCTCTCCCAGACACGATCGCTTTCCAATACCAAATGGAATGACTTGTTGAATCAAATTCTCATTTTTCAAGAATCTTTCTGGCTCGAATTTCTCCGGATCCTCAAACACTTTTTCATTTGTATGAAGAGCGCTCAGTTGGGCAGCAATCAGGCATCCAGAATCCACCGGATGCCCTCCGATTACTGTAGGCTCTTTATTGAGCCTCCAAAAGTTGACATTCAGAATCGATGCGTGTCTCTGGACTTCAGCAAGTGTTGCATTCAAATATGGAGTCTCATTTTTATCTTTCAGTGATAGATGTCGAGATGCTCCGTTGGTCACTTTCATCAATTCGTTTCTTAATTTATCCATCACATCTGGATTGTTAAGGAATCTGATAAAAGCAGAAATCAGCGTCATTGTTGTAGTCTCCTGACCAGTTATCCATAGATCTAACACTAACATCTTCAGGTTTTCTTCACTGAAATCAAATCTGGGGTAAATAAATAAAAGTTCTATTAGTATCCCTCACTTGTAAACTTCACTTTTTGGGTCTTGCTTCATTTTCAGCAAGAACGCATCCACAAAGTCTTCTACGTTGTCAGGATCAATCTCATATGTTCCTTTAATATAATCTCTGGATCTTTTAACTGCGTCTTCTGATACATAGTCTAATAGTTTGAAGTTGTCGGAAATCAATTCATCGAAACTTTTCGAAAATAATGTTTTCAGAATCCACACTGGAAGTACCAAATAAGTGGCTGAAAACTTTTCCATGGATTTGTCTACCATATGCTTGAAAGTCAAAAATCTATTCTTGTTTCTCTGAAAAAATAAGTTGAATGCATATTGCAAAAAATTCCAGCTGTACCTCATCAAACCGAAAACCCATGAGCATGTTGTTGATGATACTTCCAACTGTCAAGTCAAAAAATACATTGACAGTTTCCACAGCAGTTCCGTTGACCGACTTGGCATCAAGCTCTGAG</canonical>
            <polymorphic>CTCACCAAATAAAGCTCTGCTTTGGCCAGAGCCTCTCCCAGACACGATCGCTTTCCAATACCAAATGGAATGACTTGTTGAATCAAATTCTCATTTTTCAAGAATCTTTCTGGCTCGAATTTCTCCGGATCCTCAAACACTTTTTCATTTGTATGAAGAGCGCTCAGTTGGGCAGCAATCAGGCATCCAGAATCCACCGGATGCCCTCCGATTACTGTAGGCTCTTTATTGAGCCTCCAAAAGTTGACATTCAGAATCGATGCGTGTCTCTGGACTTCAGCAAGTGTTGCATTCAAATATGGAGTCTCATTTTTATCTTTCAGTGATAGATGTCGAGATGCTCCGTTGGTCACTTTCATCAATTCGTTTCTTAATTTATCCATCACATCTGGATTGTTAAGGAATCTGATAAAAGCAGAAATCAGCGTCATTGTTGTAGTCTCCTGACCAGTTATCCATAGATCTAACACTAACATCTTCAGGTTTTCTTCACTGAAATMAAATCTGGGGTAAATAAATAAAAGTTCTATTAGTATCCCTCACTTGTAAACTTCACTTTTTGGGTCTTGCTTCATTTTCAGCAAGAACGCATCCACAAAGTCTTCTACGTTGTCAGGATCAATCTCATATGTTCCTTTAATATAATCTCTGGATCTTTTAACTGCGTCTTCTGATACATAGTCTAATAGTTTGAAGTTGTCGGAAATCAATTCATCGAAACTTTTCGAAAATAATGTTTTCAGAATCCACACTGGAAGTACCAAATAAGTGGCTGAAAACTTTTCCATGGATTTGTCTACCATATGCTTGAAAGTCAAAAATCTATTCTTGTTTCTCTGAAAAAATAAGTTGAATGCATATTGCAAAAAATTCCAGCTGTACCTCATCAAACCGAAAACCCATGAGCATGTTGTTGATGATACTTCCAACTGTCAAGTCAAAAAATACATTGACAGTTTCCACAGCAGTTCCGTTGACCGACTTGGCATCAAGCTCTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGATTGTTAAGGAATCTGATAA</pcr_primer_p1>
		<pcr_primer_p2>GAACATATGAGATTGATCCTGAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TGGATTGTTAAGGAATCTGATAAAAGCAGAAATCAGCGTCATTGTTGTAGTCTCCTGACCAGTTATCCATAGATCTAACACTAACATCTTCAGGTTTTCTTCACTGAAATCAAATCTGGGGTAAATAAATAAAAGTTCTATTAGTATCCCTCACTTGTAAACTTCACTTTTTGGGTCTTGCTTCATTTTCAGCAAGAACGCATCCACAAAGTCTTCTACGTTGTCAGGATCAATCTCATATGTTC</canonical_amplicon>
		<polymorphic_amplicon>TGGATTGTTAAGGAATCTGATAAAAGCAGAAATCAGCGTCATTGTTGTAGTCTCCTGACCAGTTATCCATAGATCTAACACTAACATCTTCAGGTTTTCTTCACTGAAATMAAATCTGGGGTAAATAAATAAAAGTTCTATTAGTATCCCTCACTTGTAAACTTCACTTTTTGGGTCTTGCTTCATTTTCAGCAAGAACGCATCCACAAAGTCTTCTACGTTGTCAGGATCAATCTCATATGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11798</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>359733</contig_pos>
        <strand>+</strand>
        <context>TAATTTTGAA[C/T]TTATTTCAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGAGTTACACCGGTGACATCTAGAATAATCTCCCGGAAATAATTTTGAA</left_flank>
        <right_flank>TTATTTCAGCGCTTCCAGTGTGTCCAGATGGTTGGACTATGTTCAGTCGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGCTCATGATAGTATCATAAGTATTTTGTCAGTTAGCAAAACTTTGATATCTTTCACAGGAATCGAGATGAATCAGCTCAAGTTTAGCAGTGGGCGTACCCTTCTTTTACAGCTTTACGGTGTACCATACAGATTAAAGAGAGATGCAAACGTTTCAATTGGCACATTTGTCTGAATTTCCTGTAAACTGCAAACTTTATGATGTAAATAAAGTATTCCAACTCAAAAAACTGCCACCGTCCCAGGAATTACTAGTTGCATTCAAAGTCGTTACAAATATCTGTCCCGCTATTGCGGAAAACCCTCCGACATTTGGGAATCAATCAAATTATGTTATTAATATTTTCTTTAGATTTCTTCTGAATACTAATTTTTCAGGGTGTTGCTTCAAACAATATGGCTAATTATACATATGAAATCAGCTACGGAGGTGATAACTCATGGACGATGAGTTACACCGGTGACATCTAGAATAATCTCCCGGAAATAATTTTGAACTTATTTCAGCGCTTCCAGTGTGTCCAGATGGTTGGACTATGTTCAGTCGACCCACTACCAAATGGTGTATTTTGGTCATTCAGTCTGTTAATTGTCTCCAAATTCAAATCTTTTCAGGTCATAGGCAATCCAGACACCATGTTAAATTATCCTGAAGCTCAATCATATTGTGAAAGTCTTAATTTGACAGTCACTGGATTAGAGACTACAGAAGAACGGGATTTCATTGCGAGTTAGTTGATACAGTAACCCTTGAAATAGCACTCAGAATAGTTTAGTTGCGGGAGTGGATAATCTTGGTCCAGACTATCCACAATTCGCTGGATTCTGGGTATCTGGAATGAGGAAGTCCGAGTGTTATGCGGATGGATGAGAATCGATATCCTACTGCACGGGGATTGACATGCAGGTTACTCATGTGGGATACCATATTCCATTTTGCTCTCGTATCTTTTCAGCAATCCACCTTCTCTGATAATTACCTAACCAATTATGCTGGC</canonical>
            <polymorphic>ATTGCTCATGATAGTATCATAAGTATTTTGTCAGTTAGCAAAACTTTGATATCTTTCACAGGAATCGAGATGAATCAGCTCAAGTTTAGCAGTGGGCGTACCCTTCTTTTACAGCTTTACGGTGTACCATACAGATTAAAGAGAGATGCAAACGTTTCAATTGGCACATTTGTCTGAATTTCCTGTAAACTGCAAACTTTATGATGTAAATAAAGTATTCCAACTCAAAAAACTGCCACCGTCCCAGGAATTACTAGTTGCATTCAAAGTCGTTACAAATATCTGTCCCGCTATTGCGGAAAACCCTCCGACATTTGGGAATCAATCAAATTATGTTATTAATATTTTCTTTAGATTTCTTCTGAATACTAATTTTTCAGGGTGTTGCTTCAAACAATATGGCTAATTATACATATGAAATCAGCTACGGAGGTGATAACTCATGGACGATGAGTTACACCGGTGACATCTAGAATAATCTCCCGGAAATAATTTTGAAYTTATTTCAGCGCTTCCAGTGTGTCCAGATGGTTGGACTATGTTCAGTCGACCCACTACCAAATGGTGTATTTTGGTCATTCAGTCTGTTAATTGTCTCCAAATTCAAATCTTTTCAGGTCATAGGCAATCCAGACACCATGTTAAATTATCCTGAAGCTCAATCATATTGTGAAAGTCTTAATTTGACAGTCACTGGATTAGAGACTACAGAAGAACGGGATTTCATTGCGAGTTAGTTGATACAGTAACCCTTGAAATAGCACTCAGAATAGTTTAGTTGCGGGAGTGGATAATCTTGGTCCAGACTATCCACAATTCGCTGGATTCTGGGTATCTGGAATGAGGAAGTCCGAGTGTTATGCGGATGGATGAGAATCGATATCCTACTGCACGGGGATTGACATGCAGGTTACTCATGTGGGATACCATATTCCATTTTGCTCTCGTATCTTTTCAGCAATCCACCTTCTCTGATAATTACCTAACCAATTATGCTGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATACTAATTTTTCAGGGTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTAACAGACTGAATGACCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>TGAATACTAATTTTTCAGGGTGTTGCTTCAAACAATATGGCTAATTATACATATGAAATCAGCTACGGAGGTGATAACTCATGGACGATGAGTTACACCGGTGACATCTAGAATAATCTCCCGGAAATAATTTTGAACTTATTTCAGCGCTTCCAGTGTGTCCAGATGGTTGGACTATGTTCAGTCGACCCACTACCAAATGGTGTATTTTGGTCATTCAGTCTGTTAAT</canonical_amplicon>
		<polymorphic_amplicon>TGAATACTAATTTTTCAGGGTGTTGCTTCAAACAATATGGCTAATTATACATATGAAATCAGCTACGGAGGTGATAACTCATGGACGATGAGTTACACCGGTGACATCTAGAATAATCTCCCGGAAATAATTTTGAAYTTATTTCAGCGCTTCCAGTGTGTCCAGATGGTTGGACTATGTTCAGTCGACCCACTACCAAATGGTGTATTTTGGTCATTCAGTCTGTTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11799</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>359798</contig_pos>
        <strand>+</strand>
        <context>CTACCAAATG[A/G]TGTATTTTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAGTGTGTCCAGATGGTTGGACTATGTTCAGTCGACCCACTACCAAATG</left_flank>
        <right_flank>TGTATTTTGGTCATTCAGTCTGTTAATTGTCTCCAAATTCAAATCTTTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAGATGAATCAGCTCAAGTTTAGCAGTGGGCGTACCCTTCTTTTACAGCTTTACGGTGTACCATACAGATTAAAGAGAGATGCAAACGTTTCAATTGGCACATTTGTCTGAATTTCCTGTAAACTGCAAACTTTATGATGTAAATAAAGTATTCCAACTCAAAAAACTGCCACCGTCCCAGGAATTACTAGTTGCATTCAAAGTCGTTACAAATATCTGTCCCGCTATTGCGGAAAACCCTCCGACATTTGGGAATCAATCAAATTATGTTATTAATATTTTCTTTAGATTTCTTCTGAATACTAATTTTTCAGGGTGTTGCTTCAAACAATATGGCTAATTATACATATGAAATCAGCTACGGAGGTGATAACTCATGGACGATGAGTTACACCGGTGACATCTAGAATAATCTCCCGGAAATAATTTTGAACTTATTTCAGCGCTTCCAGTGTGTCCAGATGGTTGGACTATGTTCAGTCGACCCACTACCAAATGGTGTATTTTGGTCATTCAGTCTGTTAATTGTCTCCAAATTCAAATCTTTTCAGGTCATAGGCAATCCAGACACCATGTTAAATTATCCTGAAGCTCAATCATATTGTGAAAGTCTTAATTTGACAGTCACTGGATTAGAGACTACAGAAGAACGGGATTTCATTGCGAGTTAGTTGATACAGTAACCCTTGAAATAGCACTCAGAATAGTTTAGTTGCGGGAGTGGATAATCTTGGTCCAGACTATCCACAATTCGCTGGATTCTGGGTATCTGGAATGAGGAAGTCCGAGTGTTATGCGGATGGATGAGAATCGATATCCTACTGCACGGGGATTGACATGCAGGTTACTCATGTGGGATACCATATTCCATTTTGCTCTCGTATCTTTTCAGCAATCCACCTTCTCTGATAATTACCTAACCAATTATGCTGGCTACACATGGGACCAAGATCAACCAAACCGAGACACGGTCGGTGTATGGCAAAATTGTATTCAGGT</canonical>
            <polymorphic>CGAGATGAATCAGCTCAAGTTTAGCAGTGGGCGTACCCTTCTTTTACAGCTTTACGGTGTACCATACAGATTAAAGAGAGATGCAAACGTTTCAATTGGCACATTTGTCTGAATTTCCTGTAAACTGCAAACTTTATGATGTAAATAAAGTATTCCAACTCAAAAAACTGCCACCGTCCCAGGAATTACTAGTTGCATTCAAAGTCGTTACAAATATCTGTCCCGCTATTGCGGAAAACCCTCCGACATTTGGGAATCAATCAAATTATGTTATTAATATTTTCTTTAGATTTCTTCTGAATACTAATTTTTCAGGGTGTTGCTTCAAACAATATGGCTAATTATACATATGAAATCAGCTACGGAGGTGATAACTCATGGACGATGAGTTACACCGGTGACATCTAGAATAATCTCCCGGAAATAATTTTGAACTTATTTCAGCGCTTCCAGTGTGTCCAGATGGTTGGACTATGTTCAGTCGACCCACTACCAAATGRTGTATTTTGGTCATTCAGTCTGTTAATTGTCTCCAAATTCAAATCTTTTCAGGTCATAGGCAATCCAGACACCATGTTAAATTATCCTGAAGCTCAATCATATTGTGAAAGTCTTAATTTGACAGTCACTGGATTAGAGACTACAGAAGAACGGGATTTCATTGCGAGTTAGTTGATACAGTAACCCTTGAAATAGCACTCAGAATAGTTTAGTTGCGGGAGTGGATAATCTTGGTCCAGACTATCCACAATTCGCTGGATTCTGGGTATCTGGAATGAGGAAGTCCGAGTGTTATGCGGATGGATGAGAATCGATATCCTACTGCACGGGGATTGACATGCAGGTTACTCATGTGGGATACCATATTCCATTTTGCTCTCGTATCTTTTCAGCAATCCACCTTCTCTGATAATTACCTAACCAATTATGCTGGCTACACATGGGACCAAGATCAACCAAACCGAGACACGGTCGGTGTATGGCAAAATTGTATTCAGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>146 72 70 69 55 51 44 44 42 39 36 35 32 30 30 29 29 26 24 24 22 21 13 9 6 2</canonical_bands>
                <polymorphic_bands>146 82 72 70 55 51 44 44 42 39 36 35 32 30 30 29 29 26 24 24 22 21 9 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACACCGGTGACATCTAGAATA</pcr_primer_p1>
		<pcr_primer_p2>CTCTAATCCAGTGACTGTCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TACACCGGTGACATCTAGAATAATCTCCCGGAAATAATTTTGAACTTATTTCAGCGCTTCCAGTGTGTCCAGATGGTTGGACTATGTTCAGTCGACCCACTACCAAATGGTGTATTTTGGTCATTCAGTCTGTTAATTGTCTCCAAATTCAAATCTTTTCAGGTCATAGGCAATCCAGACACCATGTTAAATTATCCTGAAGCTCAATCATATTGTGAAAGTCTTAATTTGACAGTCACTGGATTAGAG</canonical_amplicon>
		<polymorphic_amplicon>TACACCGGTGACATCTAGAATAATCTCCCGGAAATAATTTTGAACTTATTTCAGCGCTTCCAGTGTGTCCAGATGGTTGGACTATGTTCAGTCGACCCACTACCAAATGRTGTATTTTGGTCATTCAGTCTGTTAATTGTCTCCAAATTCAAATCTTTTCAGGTCATAGGCAATCCAGACACCATGTTAAATTATCCTGAAGCTCAATCATATTGTGAAAGTCTTAATTTGACAGTCACTGGATTAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11800</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>359828</contig_pos>
        <strand>+</strand>
        <context>CTGTTAATTG[A/T]CTCCAAATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTCGACCCACTACCAAATGGTGTATTTTGGTCATTCAGTCTGTTAATTG</left_flank>
        <right_flank>CTCCAAATTCAAATCTTTTCAGGTCATAGGCAATCCAGACACCATGTTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGTACCCTTCTTTTACAGCTTTACGGTGTACCATACAGATTAAAGAGAGATGCAAACGTTTCAATTGGCACATTTGTCTGAATTTCCTGTAAACTGCAAACTTTATGATGTAAATAAAGTATTCCAACTCAAAAAACTGCCACCGTCCCAGGAATTACTAGTTGCATTCAAAGTCGTTACAAATATCTGTCCCGCTATTGCGGAAAACCCTCCGACATTTGGGAATCAATCAAATTATGTTATTAATATTTTCTTTAGATTTCTTCTGAATACTAATTTTTCAGGGTGTTGCTTCAAACAATATGGCTAATTATACATATGAAATCAGCTACGGAGGTGATAACTCATGGACGATGAGTTACACCGGTGACATCTAGAATAATCTCCCGGAAATAATTTTGAACTTATTTCAGCGCTTCCAGTGTGTCCAGATGGTTGGACTATGTTCAGTCGACCCACTACCAAATGGTGTATTTTGGTCATTCAGTCTGTTAATTGTCTCCAAATTCAAATCTTTTCAGGTCATAGGCAATCCAGACACCATGTTAAATTATCCTGAAGCTCAATCATATTGTGAAAGTCTTAATTTGACAGTCACTGGATTAGAGACTACAGAAGAACGGGATTTCATTGCGAGTTAGTTGATACAGTAACCCTTGAAATAGCACTCAGAATAGTTTAGTTGCGGGAGTGGATAATCTTGGTCCAGACTATCCACAATTCGCTGGATTCTGGGTATCTGGAATGAGGAAGTCCGAGTGTTATGCGGATGGATGAGAATCGATATCCTACTGCACGGGGATTGACATGCAGGTTACTCATGTGGGATACCATATTCCATTTTGCTCTCGTATCTTTTCAGCAATCCACCTTCTCTGATAATTACCTAACCAATTATGCTGGCTACACATGGGACCAAGATCAACCAAACCGAGACACGGTCGGTGTATGGCAAAATTGTATTCAGGTGTGGATTCGAAACGCCGCCAAATTTCCAAA</canonical>
            <polymorphic>GCGTACCCTTCTTTTACAGCTTTACGGTGTACCATACAGATTAAAGAGAGATGCAAACGTTTCAATTGGCACATTTGTCTGAATTTCCTGTAAACTGCAAACTTTATGATGTAAATAAAGTATTCCAACTCAAAAAACTGCCACCGTCCCAGGAATTACTAGTTGCATTCAAAGTCGTTACAAATATCTGTCCCGCTATTGCGGAAAACCCTCCGACATTTGGGAATCAATCAAATTATGTTATTAATATTTTCTTTAGATTTCTTCTGAATACTAATTTTTCAGGGTGTTGCTTCAAACAATATGGCTAATTATACATATGAAATCAGCTACGGAGGTGATAACTCATGGACGATGAGTTACACCGGTGACATCTAGAATAATCTCCCGGAAATAATTTTGAACTTATTTCAGCGCTTCCAGTGTGTCCAGATGGTTGGACTATGTTCAGTCGACCCACTACCAAATGGTGTATTTTGGTCATTCAGTCTGTTAATTGWCTCCAAATTCAAATCTTTTCAGGTCATAGGCAATCCAGACACCATGTTAAATTATCCTGAAGCTCAATCATATTGTGAAAGTCTTAATTTGACAGTCACTGGATTAGAGACTACAGAAGAACGGGATTTCATTGCGAGTTAGTTGATACAGTAACCCTTGAAATAGCACTCAGAATAGTTTAGTTGCGGGAGTGGATAATCTTGGTCCAGACTATCCACAATTCGCTGGATTCTGGGTATCTGGAATGAGGAAGTCCGAGTGTTATGCGGATGGATGAGAATCGATATCCTACTGCACGGGGATTGACATGCAGGTTACTCATGTGGGATACCATATTCCATTTTGCTCTCGTATCTTTTCAGCAATCCACCTTCTCTGATAATTACCTAACCAATTATGCTGGCTACACATGGGACCAAGATCAACCAAACCGAGACACGGTCGGTGTATGGCAAAATTGTATTCAGGTGTGGATTCGAAACGCCGCCAAATTTCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACACCGGTGACATCTAGAATA</pcr_primer_p1>
		<pcr_primer_p2>CTCTAATCCAGTGACTGTCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TACACCGGTGACATCTAGAATAATCTCCCGGAAATAATTTTGAACTTATTTCAGCGCTTCCAGTGTGTCCAGATGGTTGGACTATGTTCAGTCGACCCACTACCAAATGGTGTATTTTGGTCATTCAGTCTGTTAATTGTCTCCAAATTCAAATCTTTTCAGGTCATAGGCAATCCAGACACCATGTTAAATTATCCTGAAGCTCAATCATATTGTGAAAGTCTTAATTTGACAGTCACTGGATTAGAG</canonical_amplicon>
		<polymorphic_amplicon>TACACCGGTGACATCTAGAATAATCTCCCGGAAATAATTTTGAACTTATTTCAGCGCTTCCAGTGTGTCCAGATGGTTGGACTATGTTCAGTCGACCCACTACCAAATGGTGTATTTTGGTCATTCAGTCTGTTAATTGWCTCCAAATTCAAATCTTTTCAGGTCATAGGCAATCCAGACACCATGTTAAATTATCCTGAAGCTCAATCATATTGTGAAAGTCTTAATTTGACAGTCACTGGATTAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11801</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>359895</contig_pos>
        <strand>+</strand>
        <context>CTGAAGCTCA[A/C]TCATATTGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCAGGTCATAGGCAATCCAGACACCATGTTAAATTATCCTGAAGCTCA</left_flank>
        <right_flank>TCATATTGTGAAAGTCTTAATTTGACAGTCACTGGATTAGAGACTACAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCACATTTGTCTGAATTTCCTGTAAACTGCAAACTTTATGATGTAAATAAAGTATTCCAACTCAAAAAACTGCCACCGTCCCAGGAATTACTAGTTGCATTCAAAGTCGTTACAAATATCTGTCCCGCTATTGCGGAAAACCCTCCGACATTTGGGAATCAATCAAATTATGTTATTAATATTTTCTTTAGATTTCTTCTGAATACTAATTTTTCAGGGTGTTGCTTCAAACAATATGGCTAATTATACATATGAAATCAGCTACGGAGGTGATAACTCATGGACGATGAGTTACACCGGTGACATCTAGAATAATCTCCCGGAAATAATTTTGAACTTATTTCAGCGCTTCCAGTGTGTCCAGATGGTTGGACTATGTTCAGTCGACCCACTACCAAATGGTGTATTTTGGTCATTCAGTCTGTTAATTGTCTCCAAATTCAAATCTTTTCAGGTCATAGGCAATCCAGACACCATGTTAAATTATCCTGAAGCTCAATCATATTGTGAAAGTCTTAATTTGACAGTCACTGGATTAGAGACTACAGAAGAACGGGATTTCATTGCGAGTTAGTTGATACAGTAACCCTTGAAATAGCACTCAGAATAGTTTAGTTGCGGGAGTGGATAATCTTGGTCCAGACTATCCACAATTCGCTGGATTCTGGGTATCTGGAATGAGGAAGTCCGAGTGTTATGCGGATGGATGAGAATCGATATCCTACTGCACGGGGATTGACATGCAGGTTACTCATGTGGGATACCATATTCCATTTTGCTCTCGTATCTTTTCAGCAATCCACCTTCTCTGATAATTACCTAACCAATTATGCTGGCTACACATGGGACCAAGATCAACCAAACCGAGACACGGTCGGTGTATGGCAAAATTGTATTCAGGTGTGGATTCGAAACGCCGCCAAATTTCCAAACAATGTTAACGAAACTCTGGCTAATGGAAACGTTGACGATGCGGTGTGAGTTCATTGATTGACACAC</canonical>
            <polymorphic>GGCACATTTGTCTGAATTTCCTGTAAACTGCAAACTTTATGATGTAAATAAAGTATTCCAACTCAAAAAACTGCCACCGTCCCAGGAATTACTAGTTGCATTCAAAGTCGTTACAAATATCTGTCCCGCTATTGCGGAAAACCCTCCGACATTTGGGAATCAATCAAATTATGTTATTAATATTTTCTTTAGATTTCTTCTGAATACTAATTTTTCAGGGTGTTGCTTCAAACAATATGGCTAATTATACATATGAAATCAGCTACGGAGGTGATAACTCATGGACGATGAGTTACACCGGTGACATCTAGAATAATCTCCCGGAAATAATTTTGAACTTATTTCAGCGCTTCCAGTGTGTCCAGATGGTTGGACTATGTTCAGTCGACCCACTACCAAATGGTGTATTTTGGTCATTCAGTCTGTTAATTGTCTCCAAATTCAAATCTTTTCAGGTCATAGGCAATCCAGACACCATGTTAAATTATCCTGAAGCTCAMTCATATTGTGAAAGTCTTAATTTGACAGTCACTGGATTAGAGACTACAGAAGAACGGGATTTCATTGCGAGTTAGTTGATACAGTAACCCTTGAAATAGCACTCAGAATAGTTTAGTTGCGGGAGTGGATAATCTTGGTCCAGACTATCCACAATTCGCTGGATTCTGGGTATCTGGAATGAGGAAGTCCGAGTGTTATGCGGATGGATGAGAATCGATATCCTACTGCACGGGGATTGACATGCAGGTTACTCATGTGGGATACCATATTCCATTTTGCTCTCGTATCTTTTCAGCAATCCACCTTCTCTGATAATTACCTAACCAATTATGCTGGCTACACATGGGACCAAGATCAACCAAACCGAGACACGGTCGGTGTATGGCAAAATTGTATTCAGGTGTGGATTCGAAACGCCGCCAAATTTCCAAACAATGTTAACGAAACTCTGGCTAATGGAAACGTTGACGATGCGGTGTGAGTTCATTGATTGACACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATGTTCAGTCGACCCACTA</pcr_primer_p1>
		<pcr_primer_p2>GCAACTAAACTATTCTGAGTGCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTATGTTCAGTCGACCCACTACCAAATGGTGTATTTTGGTCATTCAGTCTGTTAATTGTCTCCAAATTCAAATCTTTTCAGGTCATAGGCAATCCAGACACCATGTTAAATTATCCTGAAGCTCAATCATATTGTGAAAGTCTTAATTTGACAGTCACTGGATTAGAGACTACAGAAGAACGGGATTTCATTGCGAGTTAGTTGATACAGTAACCCTTGAAATAGCACTCAGAATAGTTTAGTTGC</canonical_amplicon>
		<polymorphic_amplicon>CTATGTTCAGTCGACCCACTACCAAATGGTGTATTTTGGTCATTCAGTCTGTTAATTGTCTCCAAATTCAAATCTTTTCAGGTCATAGGCAATCCAGACACCATGTTAAATTATCCTGAAGCTCAMTCATATTGTGAAAGTCTTAATTTGACAGTCACTGGATTAGAGACTACAGAAGAACGGGATTTCATTGCGAGTTAGTTGATACAGTAACCCTTGAAATAGCACTCAGAATAGTTTAGTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11802</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>360047</contig_pos>
        <strand>+</strand>
        <context>AGACTATCCA[C/T]AATTCGCTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCAGAATAGTTTAGTTGCGGGAGTGGATAATCTTGGTCCAGACTATCCA</left_flank>
        <right_flank>AATTCGCTGGATTCTGGGTATCTGGAATGAGGAAGTCCGAGTGTTATGCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGGAATCAATCAAATTATGTTATTAATATTTTCTTTAGATTTCTTCTGAATACTAATTTTTCAGGGTGTTGCTTCAAACAATATGGCTAATTATACATATGAAATCAGCTACGGAGGTGATAACTCATGGACGATGAGTTACACCGGTGACATCTAGAATAATCTCCCGGAAATAATTTTGAACTTATTTCAGCGCTTCCAGTGTGTCCAGATGGTTGGACTATGTTCAGTCGACCCACTACCAAATGGTGTATTTTGGTCATTCAGTCTGTTAATTGTCTCCAAATTCAAATCTTTTCAGGTCATAGGCAATCCAGACACCATGTTAAATTATCCTGAAGCTCAATCATATTGTGAAAGTCTTAATTTGACAGTCACTGGATTAGAGACTACAGAAGAACGGGATTTCATTGCGAGTTAGTTGATACAGTAACCCTTGAAATAGCACTCAGAATAGTTTAGTTGCGGGAGTGGATAATCTTGGTCCAGACTATCCACAATTCGCTGGATTCTGGGTATCTGGAATGAGGAAGTCCGAGTGTTATGCGGATGGATGAGAATCGATATCCTACTGCACGGGGATTGACATGCAGGTTACTCATGTGGGATACCATATTCCATTTTGCTCTCGTATCTTTTCAGCAATCCACCTTCTCTGATAATTACCTAACCAATTATGCTGGCTACACATGGGACCAAGATCAACCAAACCGAGACACGGTCGGTGTATGGCAAAATTGTATTCAGGTGTGGATTCGAAACGCCGCCAAATTTCCAAACAATGTTAACGAAACTCTGGCTAATGGAAACGTTGACGATGCGGTGTGAGTTCATTGATTGACACACCTTAATACCTGTAATAGATGGTCACTGCCAAGCTTGAGGTAATATTTCATGACTCCAGTGAAAGGTATCAAAATCTGTCAATTGTTAAAATGTCTGTGATTTTATGACAAATATTTAATCAATTGACTACTTTTTAATATCTTTAACAGGAA</canonical>
            <polymorphic>TTGGGAATCAATCAAATTATGTTATTAATATTTTCTTTAGATTTCTTCTGAATACTAATTTTTCAGGGTGTTGCTTCAAACAATATGGCTAATTATACATATGAAATCAGCTACGGAGGTGATAACTCATGGACGATGAGTTACACCGGTGACATCTAGAATAATCTCCCGGAAATAATTTTGAACTTATTTCAGCGCTTCCAGTGTGTCCAGATGGTTGGACTATGTTCAGTCGACCCACTACCAAATGGTGTATTTTGGTCATTCAGTCTGTTAATTGTCTCCAAATTCAAATCTTTTCAGGTCATAGGCAATCCAGACACCATGTTAAATTATCCTGAAGCTCAATCATATTGTGAAAGTCTTAATTTGACAGTCACTGGATTAGAGACTACAGAAGAACGGGATTTCATTGCGAGTTAGTTGATACAGTAACCCTTGAAATAGCACTCAGAATAGTTTAGTTGCGGGAGTGGATAATCTTGGTCCAGACTATCCAYAATTCGCTGGATTCTGGGTATCTGGAATGAGGAAGTCCGAGTGTTATGCGGATGGATGAGAATCGATATCCTACTGCACGGGGATTGACATGCAGGTTACTCATGTGGGATACCATATTCCATTTTGCTCTCGTATCTTTTCAGCAATCCACCTTCTCTGATAATTACCTAACCAATTATGCTGGCTACACATGGGACCAAGATCAACCAAACCGAGACACGGTCGGTGTATGGCAAAATTGTATTCAGGTGTGGATTCGAAACGCCGCCAAATTTCCAAACAATGTTAACGAAACTCTGGCTAATGGAAACGTTGACGATGCGGTGTGAGTTCATTGATTGACACACCTTAATACCTGTAATAGATGGTCACTGCCAAGCTTGAGGTAATATTTCATGACTCCAGTGAAAGGTATCAAAATCTGTCAATTGTTAAAATGTCTGTGATTTTATGACAAATATTTAATCAATTGACTACTTTTTAATATCTTTAACAGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>73 70 70 69 55 54 51 44 44 39 38 36 36 35 32 30 29 26 25 24 24 23 21 16 13 9 6 2 2 2 2</canonical_bands>
                <polymorphic_bands>73 70 70 69 68 55 54 51 44 39 38 36 36 35 32 30 29 26 25 24 23 21 16 13 9 6 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTGACAGTCACTGGATTAGAG</pcr_primer_p1>
		<pcr_primer_p2>AATATGGTATCCCACATGAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTTGACAGTCACTGGATTAGAGACTACAGAAGAACGGGATTTCATTGCGAGTTAGTTGATACAGTAACCCTTGAAATAGCACTCAGAATAGTTTAGTTGCGGGAGTGGATAATCTTGGTCCAGACTATCCACAATTCGCTGGATTCTGGGTATCTGGAATGAGGAAGTCCGAGTGTTATGCGGATGGATGAGAATCGATATCCTACTGCACGGGGATTGACATGCAGGTTACTCATGTGGGATACCATATT</canonical_amplicon>
		<polymorphic_amplicon>ATTTGACAGTCACTGGATTAGAGACTACAGAAGAACGGGATTTCATTGCGAGTTAGTTGATACAGTAACCCTTGAAATAGCACTCAGAATAGTTTAGTTGCGGGAGTGGATAATCTTGGTCCAGACTATCCAYAATTCGCTGGATTCTGGGTATCTGGAATGAGGAAGTCCGAGTGTTATGCGGATGGATGAGAATCGATATCCTACTGCACGGGGATTGACATGCAGGTTACTCATGTGGGATACCATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11803</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>360067</contig_pos>
        <strand>+</strand>
        <context>GATTCTGGGT[A/G]TCTGGARTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAGTGGATAATCTTGGTCCAGACTATCCACAATTCGCTGGATTCTGGGT</left_flank>
        <right_flank>TCTGGAATGAGGAAGTCCGAGTGTTATGCGGATGGATGAGAATCGATATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTATTAATATTTTCTTTAGATTTCTTCTGAATACTAATTTTTCAGGGTGTTGCTTCAAACAATATGGCTAATTATACATATGAAATCAGCTACGGAGGTGATAACTCATGGACGATGAGTTACACCGGTGACATCTAGAATAATCTCCCGGAAATAATTTTGAACTTATTTCAGCGCTTCCAGTGTGTCCAGATGGTTGGACTATGTTCAGTCGACCCACTACCAAATGGTGTATTTTGGTCATTCAGTCTGTTAATTGTCTCCAAATTCAAATCTTTTCAGGTCATAGGCAATCCAGACACCATGTTAAATTATCCTGAAGCTCAATCATATTGTGAAAGTCTTAATTTGACAGTCACTGGATTAGAGACTACAGAAGAACGGGATTTCATTGCGAGTTAGTTGATACAGTAACCCTTGAAATAGCACTCAGAATAGTTTAGTTGCGGGAGTGGATAATCTTGGTCCAGACTATCCACAATTCGCTGGATTCTGGGTATCTGGAATGAGGAAGTCCGAGTGTTATGCGGATGGATGAGAATCGATATCCTACTGCACGGGGATTGACATGCAGGTTACTCATGTGGGATACCATATTCCATTTTGCTCTCGTATCTTTTCAGCAATCCACCTTCTCTGATAATTACCTAACCAATTATGCTGGCTACACATGGGACCAAGATCAACCAAACCGAGACACGGTCGGTGTATGGCAAAATTGTATTCAGGTGTGGATTCGAAACGCCGCCAAATTTCCAAACAATGTTAACGAAACTCTGGCTAATGGAAACGTTGACGATGCGGTGTGAGTTCATTGATTGACACACCTTAATACCTGTAATAGATGGTCACTGCCAAGCTTGAGGTAATATTTCATGACTCCAGTGAAAGGTATCAAAATCTGTCAATTGTTAAAATGTCTGTGATTTTATGACAAATATTTAATCAATTGACTACTTTTTAATATCTTTAACAGGAACCGAGATAAATTAGTTCAAA</canonical>
            <polymorphic>GTTATTAATATTTTCTTTAGATTTCTTCTGAATACTAATTTTTCAGGGTGTTGCTTCAAACAATATGGCTAATTATACATATGAAATCAGCTACGGAGGTGATAACTCATGGACGATGAGTTACACCGGTGACATCTAGAATAATCTCCCGGAAATAATTTTGAACTTATTTCAGCGCTTCCAGTGTGTCCAGATGGTTGGACTATGTTCAGTCGACCCACTACCAAATGGTGTATTTTGGTCATTCAGTCTGTTAATTGTCTCCAAATTCAAATCTTTTCAGGTCATAGGCAATCCAGACACCATGTTAAATTATCCTGAAGCTCAATCATATTGTGAAAGTCTTAATTTGACAGTCACTGGATTAGAGACTACAGAAGAACGGGATTTCATTGCGAGTTAGTTGATACAGTAACCCTTGAAATAGCACTCAGAATAGTTTAGTTGCGGGAGTGGATAATCTTGGTCCAGACTATCCACAATTCGCTGGATTCTGGGTRTCTGGAATGAGGAAGTCCGAGTGTTATGCGGATGGATGAGAATCGATATCCTACTGCACGGGGATTGACATGCAGGTTACTCATGTGGGATACCATATTCCATTTTGCTCTCGTATCTTTTCAGCAATCCACCTTCTCTGATAATTACCTAACCAATTATGCTGGCTACACATGGGACCAAGATCAACCAAACCGAGACACGGTCGGTGTATGGCAAAATTGTATTCAGGTGTGGATTCGAAACGCCGCCAAATTTCCAAACAATGTTAACGAAACTCTGGCTAATGGAAACGTTGACGATGCGGTGTGAGTTCATTGATTGACACACCTTAATACCTGTAATAGATGGTCACTGCCAAGCTTGAGGTAATATTTCATGACTCCAGTGAAAGGTATCAAAATCTGTCAATTGTTAAAATGTCTGTGATTTTATGACAAATATTTAATCAATTGACTACTTTTTAATATCTTTAACAGGAACCGAGATAAATTAGTTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGACAGTCACTGGATTAGAG</pcr_primer_p1>
		<pcr_primer_p2>AATATGGTATCCCACATGAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTTGACAGTCACTGGATTAGAGACTACAGAAGAACGGGATTTCATTGCGAGTTAGTTGATACAGTAACCCTTGAAATAGCACTCAGAATAGTTTAGTTGCGGGAGTGGATAATCTTGGTCCAGACTATCCACAATTCGCTGGATTCTGGGTATCTGGAATGAGGAAGTCCGAGTGTTATGCGGATGGATGAGAATCGATATCCTACTGCACGGGGATTGACATGCAGGTTACTCATGTGGGATACCATATT</canonical_amplicon>
		<polymorphic_amplicon>ATTTGACAGTCACTGGATTAGAGACTACAGAAGAACGGGATTTCATTGCGAGTTAGTTGATACAGTAACCCTTGAAATAGCACTCAGAATAGTTTAGTTGCGGGAGTGGATAATCTTGGTCCAGACTATCCACAATTCGCTGGATTCTGGGTRTCTGGAATGAGGAAGTCCGAGTGTTATGCGGATGGATGAGAATCGATATCCTACTGCACGGGGATTGACATGCAGGTTACTCATGTGGGATACCATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11804</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>360074</contig_pos>
        <strand>+</strand>
        <context>GGTRTCTGGA[A/G]TGAGGAAGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAATCTTGGTCCAGACTATCCACAATTCGCTGGATTCTGGGTATCTGGA</left_flank>
        <right_flank>TGAGGAAGTCCGAGTGTTATGCGGATGGATGAGAATCGATATCCTACTGC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATTTTCTTTAGATTTCTTCTGAATACTAATTTTTCAGGGTGTTGCTTCAAACAATATGGCTAATTATACATATGAAATCAGCTACGGAGGTGATAACTCATGGACGATGAGTTACACCGGTGACATCTAGAATAATCTCCCGGAAATAATTTTGAACTTATTTCAGCGCTTCCAGTGTGTCCAGATGGTTGGACTATGTTCAGTCGACCCACTACCAAATGGTGTATTTTGGTCATTCAGTCTGTTAATTGTCTCCAAATTCAAATCTTTTCAGGTCATAGGCAATCCAGACACCATGTTAAATTATCCTGAAGCTCAATCATATTGTGAAAGTCTTAATTTGACAGTCACTGGATTAGAGACTACAGAAGAACGGGATTTCATTGCGAGTTAGTTGATACAGTAACCCTTGAAATAGCACTCAGAATAGTTTAGTTGCGGGAGTGGATAATCTTGGTCCAGACTATCCACAATTCGCTGGATTCTGGGTATCTGGAATGAGGAAGTCCGAGTGTTATGCGGATGGATGAGAATCGATATCCTACTGCACGGGGATTGACATGCAGGTTACTCATGTGGGATACCATATTCCATTTTGCTCTCGTATCTTTTCAGCAATCCACCTTCTCTGATAATTACCTAACCAATTATGCTGGCTACACATGGGACCAAGATCAACCAAACCGAGACACGGTCGGTGTATGGCAAAATTGTATTCAGGTGTGGATTCGAAACGCCGCCAAATTTCCAAACAATGTTAACGAAACTCTGGCTAATGGAAACGTTGACGATGCGGTGTGAGTTCATTGATTGACACACCTTAATACCTGTAATAGATGGTCACTGCCAAGCTTGAGGTAATATTTCATGACTCCAGTGAAAGGTATCAAAATCTGTCAATTGTTAAAATGTCTGTGATTTTATGACAAATATTTAATCAATTGACTACTTTTTAATATCTTTAACAGGAACCGAGATAAATTAGTTCAAATCTTGAA</canonical>
            <polymorphic>ATATTTTCTTTAGATTTCTTCTGAATACTAATTTTTCAGGGTGTTGCTTCAAACAATATGGCTAATTATACATATGAAATCAGCTACGGAGGTGATAACTCATGGACGATGAGTTACACCGGTGACATCTAGAATAATCTCCCGGAAATAATTTTGAACTTATTTCAGCGCTTCCAGTGTGTCCAGATGGTTGGACTATGTTCAGTCGACCCACTACCAAATGGTGTATTTTGGTCATTCAGTCTGTTAATTGTCTCCAAATTCAAATCTTTTCAGGTCATAGGCAATCCAGACACCATGTTAAATTATCCTGAAGCTCAATCATATTGTGAAAGTCTTAATTTGACAGTCACTGGATTAGAGACTACAGAAGAACGGGATTTCATTGCGAGTTAGTTGATACAGTAACCCTTGAAATAGCACTCAGAATAGTTTAGTTGCGGGAGTGGATAATCTTGGTCCAGACTATCCACAATTCGCTGGATTCTGGGTATCTGGARTGAGGAAGTCCGAGTGTTATGCGGATGGATGAGAATCGATATCCTACTGCACGGGGATTGACATGCAGGTTACTCATGTGGGATACCATATTCCATTTTGCTCTCGTATCTTTTCAGCAATCCACCTTCTCTGATAATTACCTAACCAATTATGCTGGCTACACATGGGACCAAGATCAACCAAACCGAGACACGGTCGGTGTATGGCAAAATTGTATTCAGGTGTGGATTCGAAACGCCGCCAAATTTCCAAACAATGTTAACGAAACTCTGGCTAATGGAAACGTTGACGATGCGGTGTGAGTTCATTGATTGACACACCTTAATACCTGTAATAGATGGTCACTGCCAAGCTTGAGGTAATATTTCATGACTCCAGTGAAAGGTATCAAAATCTGTCAATTGTTAAAATGTCTGTGATTTTATGACAAATATTTAATCAATTGACTACTTTTTAATATCTTTAACAGGAACCGAGATAAATTAGTTCAAATCTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGACAGTCACTGGATTAGAG</pcr_primer_p1>
		<pcr_primer_p2>AATATGGTATCCCACATGAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTTGACAGTCACTGGATTAGAGACTACAGAAGAACGGGATTTCATTGCGAGTTAGTTGATACAGTAACCCTTGAAATAGCACTCAGAATAGTTTAGTTGCGGGAGTGGATAATCTTGGTCCAGACTATCCACAATTCGCTGGATTCTGGGTATCTGGAATGAGGAAGTCCGAGTGTTATGCGGATGGATGAGAATCGATATCCTACTGCACGGGGATTGACATGCAGGTTACTCATGTGGGATACCATATT</canonical_amplicon>
		<polymorphic_amplicon>ATTTGACAGTCACTGGATTAGAGACTACAGAAGAACGGGATTTCATTGCGAGTTAGTTGATACAGTAACCCTTGAAATAGCACTCAGAATAGTTTAGTTGCGGGAGTGGATAATCTTGGTCCAGACTATCCACAATTCGCTGGATTCTGGGTATCTGGARTGAGGAAGTCCGAGTGTTATGCGGATGGATGAGAATCGATATCCTACTGCACGGGGATTGACATGCAGGTTACTCATGTGGGATACCATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11805</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>360106</contig_pos>
        <strand>+</strand>
        <context>CGGATGGATG[A/G]GAATCGATAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGATTCTGGGTATCTGGAATGAGGAAGTCCGAGTGTTATGCGGATGGATG</left_flank>
        <right_flank>GAATCGATATCCTACTGCACGGGGATTGACATGCAGGTTACTCATGTGGG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCAGGGTGTTGCTTCAAACAATATGGCTAATTATACATATGAAATCAGCTACGGAGGTGATAACTCATGGACGATGAGTTACACCGGTGACATCTAGAATAATCTCCCGGAAATAATTTTGAACTTATTTCAGCGCTTCCAGTGTGTCCAGATGGTTGGACTATGTTCAGTCGACCCACTACCAAATGGTGTATTTTGGTCATTCAGTCTGTTAATTGTCTCCAAATTCAAATCTTTTCAGGTCATAGGCAATCCAGACACCATGTTAAATTATCCTGAAGCTCAATCATATTGTGAAAGTCTTAATTTGACAGTCACTGGATTAGAGACTACAGAAGAACGGGATTTCATTGCGAGTTAGTTGATACAGTAACCCTTGAAATAGCACTCAGAATAGTTTAGTTGCGGGAGTGGATAATCTTGGTCCAGACTATCCACAATTCGCTGGATTCTGGGTATCTGGAATGAGGAAGTCCGAGTGTTATGCGGATGGATGAGAATCGATATCCTACTGCACGGGGATTGACATGCAGGTTACTCATGTGGGATACCATATTCCATTTTGCTCTCGTATCTTTTCAGCAATCCACCTTCTCTGATAATTACCTAACCAATTATGCTGGCTACACATGGGACCAAGATCAACCAAACCGAGACACGGTCGGTGTATGGCAAAATTGTATTCAGGTGTGGATTCGAAACGCCGCCAAATTTCCAAACAATGTTAACGAAACTCTGGCTAATGGAAACGTTGACGATGCGGTGTGAGTTCATTGATTGACACACCTTAATACCTGTAATAGATGGTCACTGCCAAGCTTGAGGTAATATTTCATGACTCCAGTGAAAGGTATCAAAATCTGTCAATTGTTAAAATGTCTGTGATTTTATGACAAATATTTAATCAATTGACTACTTTTTAATATCTTTAACAGGAACCGAGATAAATTAGTTCAAATCTTGAAGATTTTAAACAGATTTCACGGTGAATACTGTA</canonical>
            <polymorphic>TTTTCAGGGTGTTGCTTCAAACAATATGGCTAATTATACATATGAAATCAGCTACGGAGGTGATAACTCATGGACGATGAGTTACACCGGTGACATCTAGAATAATCTCCCGGAAATAATTTTGAACTTATTTCAGCGCTTCCAGTGTGTCCAGATGGTTGGACTATGTTCAGTCGACCCACTACCAAATGGTGTATTTTGGTCATTCAGTCTGTTAATTGTCTCCAAATTCAAATCTTTTCAGGTCATAGGCAATCCAGACACCATGTTAAATTATCCTGAAGCTCAATCATATTGTGAAAGTCTTAATTTGACAGTCACTGGATTAGAGACTACAGAAGAACGGGATTTCATTGCGAGTTAGTTGATACAGTAACCCTTGAAATAGCACTCAGAATAGTTTAGTTGCGGGAGTGGATAATCTTGGTCCAGACTATCCACAATTCGCTGGATTCTGGGTATCTGGAATGAGGAAGTCCGAGTGTTATGCGGATGGATGRGAATCGATATCCTACTGCACGGGGATTGACATGCAGGTTACTCATGTGGGATACCATATTCCATTTTGCTCTCGTATCTTTTCAGCAATCCACCTTCTCTGATAATTACCTAACCAATTATGCTGGCTACACATGGGACCAAGATCAACCAAACCGAGACACGGTCGGTGTATGGCAAAATTGTATTCAGGTGTGGATTCGAAACGCCGCCAAATTTCCAAACAATGTTAACGAAACTCTGGCTAATGGAAACGTTGACGATGCGGTGTGAGTTCATTGATTGACACACCTTAATACCTGTAATAGATGGTCACTGCCAAGCTTGAGGTAATATTTCATGACTCCAGTGAAAGGTATCAAAATCTGTCAATTGTTAAAATGTCTGTGATTTTATGACAAATATTTAATCAATTGACTACTTTTTAATATCTTTAACAGGAACCGAGATAAATTAGTTCAAATCTTGAAGATTTTAAACAGATTTCACGGTGAATACTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGACAGTCACTGGATTAGAG</pcr_primer_p1>
		<pcr_primer_p2>AATATGGTATCCCACATGAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTTGACAGTCACTGGATTAGAGACTACAGAAGAACGGGATTTCATTGCGAGTTAGTTGATACAGTAACCCTTGAAATAGCACTCAGAATAGTTTAGTTGCGGGAGTGGATAATCTTGGTCCAGACTATCCACAATTCGCTGGATTCTGGGTATCTGGAATGAGGAAGTCCGAGTGTTATGCGGATGGATGAGAATCGATATCCTACTGCACGGGGATTGACATGCAGGTTACTCATGTGGGATACCATATT</canonical_amplicon>
		<polymorphic_amplicon>ATTTGACAGTCACTGGATTAGAGACTACAGAAGAACGGGATTTCATTGCGAGTTAGTTGATACAGTAACCCTTGAAATAGCACTCAGAATAGTTTAGTTGCGGGAGTGGATAATCTTGGTCCAGACTATCCACAATTCGCTGGATTCTGGGTATCTGGAATGAGGAAGTCCGAGTGTTATGCGGATGGATGRGAATCGATATCCTACTGCACGGGGATTGACATGCAGGTTACTCATGTGGGATACCATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11806</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>360196</contig_pos>
        <strand>+</strand>
        <context>TTTCAGCAAT[C/T]CACCTTCTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTCATGTGGGATACCATATTCCATTTTGCTCTCGTATCTTTTCAGCAAT</left_flank>
        <right_flank>CACCTTCTCTGATAATTACCTAACCAATTATGCTGGCTACACATGGGACC</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACATCTAGAATAATCTCCCGGAAATAATTTTGAACTTATTTCAGCGCTTCCAGTGTGTCCAGATGGTTGGACTATGTTCAGTCGACCCACTACCAAATGGTGTATTTTGGTCATTCAGTCTGTTAATTGTCTCCAAATTCAAATCTTTTCAGGTCATAGGCAATCCAGACACCATGTTAAATTATCCTGAAGCTCAATCATATTGTGAAAGTCTTAATTTGACAGTCACTGGATTAGAGACTACAGAAGAACGGGATTTCATTGCGAGTTAGTTGATACAGTAACCCTTGAAATAGCACTCAGAATAGTTTAGTTGCGGGAGTGGATAATCTTGGTCCAGACTATCCACAATTCGCTGGATTCTGGGTATCTGGAATGAGGAAGTCCGAGTGTTATGCGGATGGATGAGAATCGATATCCTACTGCACGGGGATTGACATGCAGGTTACTCATGTGGGATACCATATTCCATTTTGCTCTCGTATCTTTTCAGCAATCCACCTTCTCTGATAATTACCTAACCAATTATGCTGGCTACACATGGGACCAAGATCAACCAAACCGAGACACGGTCGGTGTATGGCAAAATTGTATTCAGGTGTGGATTCGAAACGCCGCCAAATTTCCAAACAATGTTAACGAAACTCTGGCTAATGGAAACGTTGACGATGCGGTGTGAGTTCATTGATTGACACACCTTAATACCTGTAATAGATGGTCACTGCCAAGCTTGAGGTAATATTTCATGACTCCAGTGAAAGGTATCAAAATCTGTCAATTGTTAAAATGTCTGTGATTTTATGACAAATATTTAATCAATTGACTACTTTTTAATATCTTTAACAGGAACCGAGATAAATTAGTTCAAATCTTGAAGATTTTAAACAGATTTCACGGTGAATACTGTATAGCTTATACTGTATGTTTTAGATGCGAAGAGTCCTACTATGCGTCGTACCAGATGAGGGGATTTGCATGTGGAAAGGTAGCAGAAATTC</canonical>
            <polymorphic>TGACATCTAGAATAATCTCCCGGAAATAATTTTGAACTTATTTCAGCGCTTCCAGTGTGTCCAGATGGTTGGACTATGTTCAGTCGACCCACTACCAAATGGTGTATTTTGGTCATTCAGTCTGTTAATTGTCTCCAAATTCAAATCTTTTCAGGTCATAGGCAATCCAGACACCATGTTAAATTATCCTGAAGCTCAATCATATTGTGAAAGTCTTAATTTGACAGTCACTGGATTAGAGACTACAGAAGAACGGGATTTCATTGCGAGTTAGTTGATACAGTAACCCTTGAAATAGCACTCAGAATAGTTTAGTTGCGGGAGTGGATAATCTTGGTCCAGACTATCCACAATTCGCTGGATTCTGGGTATCTGGAATGAGGAAGTCCGAGTGTTATGCGGATGGATGAGAATCGATATCCTACTGCACGGGGATTGACATGCAGGTTACTCATGTGGGATACCATATTCCATTTTGCTCTCGTATCTTTTCAGCAATYCACCTTCTCTGATAATTACCTAACCAATTATGCTGGCTACACATGGGACCAAGATCAACCAAACCGAGACACGGTCGGTGTATGGCAAAATTGTATTCAGGTGTGGATTCGAAACGCCGCCAAATTTCCAAACAATGTTAACGAAACTCTGGCTAATGGAAACGTTGACGATGCGGTGTGAGTTCATTGATTGACACACCTTAATACCTGTAATAGATGGTCACTGCCAAGCTTGAGGTAATATTTCATGACTCCAGTGAAAGGTATCAAAATCTGTCAATTGTTAAAATGTCTGTGATTTTATGACAAATATTTAATCAATTGACTACTTTTTAATATCTTTAACAGGAACCGAGATAAATTAGTTCAAATCTTGAAGATTTTAAACAGATTTCACGGTGAATACTGTATAGCTTATACTGTATGTTTTAGATGCGAAGAGTCCTACTATGCGTCGTACCAGATGAGGGGATTTGCATGTGGAAAGGTAGCAGAAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGTTACTCATGTGGGATAC</pcr_primer_p1>
		<pcr_primer_p2>GTCAATCAATGAACTCACACC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAGGTTACTCATGTGGGATACCATATTCCATTTTGCTCTCGTATCTTTTCAGCAATCCACCTTCTCTGATAATTACCTAACCAATTATGCTGGCTACACATGGGACCAAGATCAACCAAACCGAGACACGGTCGGTGTATGGCAAAATTGTATTCAGGTGTGGATTCGAAACGCCGCCAAATTTCCAAACAATGTTAACGAAACTCTGGCTAATGGAAACGTTGACGATGCGGTGTGAGTTCATTGATTGAC</canonical_amplicon>
		<polymorphic_amplicon>CAGGTTACTCATGTGGGATACCATATTCCATTTTGCTCTCGTATCTTTTCAGCAATYCACCTTCTCTGATAATTACCTAACCAATTATGCTGGCTACACATGGGACCAAGATCAACCAAACCGAGACACGGTCGGTGTATGGCAAAATTGTATTCAGGTGTGGATTCGAAACGCCGCCAAATTTCCAAACAATGTTAACGAAACTCTGGCTAATGGAAACGTTGACGATGCGGTGTGAGTTCATTGATTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11807</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>364126</contig_pos>
        <strand>+</strand>
        <context>TACCGAACTC[A/G]ATTTTCCACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTCTCCGAGGAAGTCTTGTCGCATGTGAAAACTTCTGACTACCGAACTC</left_flank>
        <right_flank>ATTTTCCACAATTGAGTTTCTCCCGGTTGGAAATTTCCATGAAGCATTAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCATTTTTTGACTCGACTCACGTGTATACAATTTGGATGCGTGGTAGAGATGATCAAGGAAATGGACAGTCTCTTCGTACTCCAGAACCTTCAATTCCATTCGATTTGGCTTGGTCGGCGTTGGCTTCCATTTTTCAAAAAATTTACAAGAGTCTTGGAGAAACTGAAATTTTCCGAATAAATATTGAGAGTATCTAAAAATCGAACACCTCTTTGTTGACATGGATCAGATCACCACCCTTGCATTGCAACTCTGCGTTCGTTATACCACTGGGTCCGTGACTTTGCAAAACGGATGCGAAATTGAAACCGGGAATTTGTATGCACTCAACTTTCAATGTGAAAGCGTATGGTCCAGCCGGTCCCATCTCTTTCAACACATCACTCCAATAATAGCACGTTGGAAAGCAAATTGTTCGTTGCACAGTATTCAAATATCGTTCGTGAGTTCTCCGAGGAAGTCTTGTCGCATGTGAAAACTTCTGACTACCGAACTCGATTTTCCACAATTGAGTTTCTCCCGGTTGGAAATTTCCATGAAGCATTAATTGTAGACAAAGGTACTCAACACCAGAATACGTCTTTCGATGGAGACTCGTCGTCCAGAACATTCCATTCTTGGTCTTGAAATTTTTGAATACCGGAGGACCGCGAGACTGGTGGTAGATCATAATGTGGCTTAATTGAAAGGTGTCATCGTAGAGTCTTTTGGTTGGAACGTCCTTTTTAGTGGCCTGTAAGAAGAAAAAACTGATCAACGTTTAGTTGAGATTCATTTACCAGGAGAGGATGAGTCAATGGAGCGAAAAGGACCGAACGCAATGAGCTGAAATAGACATCCACATTTCCAGCAGAAATCATTGCTTGGGCGAAGTAATAGAATCCAAACTTCTCGGCGATTCGAACAACTTCTTGTAAGCGGTTGTCTGAAATTTAAGGAATAATCTTCTAAACTTCAGTTAATGTTTTTCTTACTATCAATGTTCCAGCTATGGTAA</canonical>
            <polymorphic>ATTCATTTTTTGACTCGACTCACGTGTATACAATTTGGATGCGTGGTAGAGATGATCAAGGAAATGGACAGTCTCTTCGTACTCCAGAACCTTCAATTCCATTCGATTTGGCTTGGTCGGCGTTGGCTTCCATTTTTCAAAAAATTTACAAGAGTCTTGGAGAAACTGAAATTTTCCGAATAAATATTGAGAGTATCTAAAAATCGAACACCTCTTTGTTGACATGGATCAGATCACCACCCTTGCATTGCAACTCTGCGTTCGTTATACCACTGGGTCCGTGACTTTGCAAAACGGATGCGAAATTGAAACCGGGAATTTGTATGCACTCAACTTTCAATGTGAAAGCGTATGGTCCAGCCGGTCCCATCTCTTTCAACACATCACTCCAATAATAGCACGTTGGAAAGCAAATTGTTCGTTGCACAGTATTCAAATATCGTTCGTGAGTTCTCCGAGGAAGTCTTGTCGCATGTGAAAACTTCTGACTACCGAACTCRATTTTCCACAATTGAGTTTCTCCCGGTTGGAAATTTCCATGAAGCATTAATTGTAGACAAAGGTACTCAACACCAGAATACGTCTTTCGATGGAGACTCGTCGTCCAGAACATTCCATTCTTGGTCTTGAAATTTTTGAATACCGGAGGACCGCGAGACTGGTGGTAGATCATAATGTGGCTTAATTGAAAGGTGTCATCGTAGAGTCTTTTGGTTGGAACGTCCTTTTTAGTGGCCTGTAAGAAGAAAAAACTGATCAACGTTTAGTTGAGATTCATTTACCAGGAGAGGATGAGTCAATGGAGCGAAAAGGACCGAACGCAATGAGCTGAAATAGACATCCACATTTCCAGCAGAAATCATTGCTTGGGCGAAGTAATAGAATCCAAACTTCTCGGCGATTCGAACAACTTCTTGTAAGCGGTTGTCTGAAATTTAAGGAATAATCTTCTAAACTTCAGTTAATGTTTTTCTTACTATCAATGTTCCAGCTATGGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>316 294 101 96 89 88 16</canonical_bands>
                <polymorphic_bands>383 316 101 96 88 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTATTCAAATATCGTTCGTGAG</pcr_primer_p1>
		<pcr_primer_p2>CATTATGATCTACCACCAGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTATTCAAATATCGTTCGTGAGTTCTCCGAGGAAGTCTTGTCGCATGTGAAAACTTCTGACTACCGAACTCGATTTTCCACAATTGAGTTTCTCCCGGTTGGAAATTTCCATGAAGCATTAATTGTAGACAAAGGTACTCAACACCAGAATACGTCTTTCGATGGAGACTCGTCGTCCAGAACATTCCATTCTTGGTCTTGAAATTTTTGAATACCGGAGGACCGCGAGACTGGTGGTAGATCATAATG</canonical_amplicon>
		<polymorphic_amplicon>AGTATTCAAATATCGTTCGTGAGTTCTCCGAGGAAGTCTTGTCGCATGTGAAAACTTCTGACTACCGAACTCRATTTTCCACAATTGAGTTTCTCCCGGTTGGAAATTTCCATGAAGCATTAATTGTAGACAAAGGTACTCAACACCAGAATACGTCTTTCGATGGAGACTCGTCGTCCAGAACATTCCATTCTTGGTCTTGAAATTTTTGAATACCGGAGGACCGCGAGACTGGTGGTAGATCATAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11808</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>363862</contig_pos>
        <strand>+</strand>
        <context>GGATCAGATC[A/G]CCACCCTTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGAGAGTATCTAAAAATCGAACACCTCTTTGTTGACATGGATCAGATC</left_flank>
        <right_flank>CCACCCTTGCATTGCAACTCTGCGTTCGTTATACCACTGGGTCCGTGACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGGTCAATAGGAAAGAGGGAATATAGATTTTTGAAATAGTTGGGATACAAATTTAGGTTCGGGTAATCTCAGGTGTGTTTCATTTTTCATTTATAAAATTGAATACCAAGCAACTAAAAGAACCCGGCAACGAAAAATAAAGTACCTATCCTGGTATCCAAGATGAACTTTTAAGTTAATTCAAAAATAAAACTGATCGCAGAAGGCTCCCGGTGAAGAACCTGAGAACCAAGAGAGACTTTTATACTCTGTTTTGTAGCTAATTCATTTTTTGACTCGACTCACGTGTATACAATTTGGATGCGTGGTAGAGATGATCAAGGAAATGGACAGTCTCTTCGTACTCCAGAACCTTCAATTCCATTCGATTTGGCTTGGTCGGCGTTGGCTTCCATTTTTCAAAAAATTTACAAGAGTCTTGGAGAAACTGAAATTTTCCGAATAAATATTGAGAGTATCTAAAAATCGAACACCTCTTTGTTGACATGGATCAGATCACCACCCTTGCATTGCAACTCTGCGTTCGTTATACCACTGGGTCCGTGACTTTGCAAAACGGATGCGAAATTGAAACCGGGAATTTGTATGCACTCAACTTTCAATGTGAAAGCGTATGGTCCAGCCGGTCCCATCTCTTTCAACACATCACTCCAATAATAGCACGTTGGAAAGCAAATTGTTCGTTGCACAGTATTCAAATATCGTTCGTGAGTTCTCCGAGGAAGTCTTGTCGCATGTGAAAACTTCTGACTACCGAACTCGATTTTCCACAATTGAGTTTCTCCCGGTTGGAAATTTCCATGAAGCATTAATTGTAGACAAAGGTACTCAACACCAGAATACGTCTTTCGATGGAGACTCGTCGTCCAGAACATTCCATTCTTGGTCTTGAAATTTTTGAATACCGGAGGACCGCGAGACTGGTGGTAGATCATAATGTGGCTTAATTGAAAGGTGTCATCGTAGAGTCTTTTGGTTGGAACGTCCTTTTTAGTGGC</canonical>
            <polymorphic>ATGGGTCAATAGGAAAGAGGGAATATAGATTTTTGAAATAGTTGGGATACAAATTTAGGTTCGGGTAATCTCAGGTGTGTTTCATTTTTCATTTATAAAATTGAATACCAAGCAACTAAAAGAACCCGGCAACGAAAAATAAAGTACCTATCCTGGTATCCAAGATGAACTTTTAAGTTAATTCAAAAATAAAACTGATCGCAGAAGGCTCCCGGTGAAGAACCTGAGAACCAAGAGAGACTTTTATACTCTGTTTTGTAGCTAATTCATTTTTTGACTCGACTCACGTGTATACAATTTGGATGCGTGGTAGAGATGATCAAGGAAATGGACAGTCTCTTCGTACTCCAGAACCTTCAATTCCATTCGATTTGGCTTGGTCGGCGTTGGCTTCCATTTTTCAAAAAATTTACAAGAGTCTTGGAGAAACTGAAATTTTCCGAATAAATATTGAGAGTATCTAAAAATCGAACACCTCTTTGTTGACATGGATCAGATCRCCACCCTTGCATTGCAACTCTGCGTTCGTTATACCACTGGGTCCGTGACTTTGCAAAACGGATGCGAAATTGAAACCGGGAATTTGTATGCACTCAACTTTCAATGTGAAAGCGTATGGTCCAGCCGGTCCCATCTCTTTCAACACATCACTCCAATAATAGCACGTTGGAAAGCAAATTGTTCGTTGCACAGTATTCAAATATCGTTCGTGAGTTCTCCGAGGAAGTCTTGTCGCATGTGAAAACTTCTGACTACCGAACTCGATTTTCCACAATTGAGTTTCTCCCGGTTGGAAATTTCCATGAAGCATTAATTGTAGACAAAGGTACTCAACACCAGAATACGTCTTTCGATGGAGACTCGTCGTCCAGAACATTCCATTCTTGGTCTTGAAATTTTTGAATACCGGAGGACCGCGAGACTGGTGGTAGATCATAATGTGGCTTAATTGAAAGGTGTCATCGTAGAGTCTTTTGGTTGGAACGTCCTTTTTAGTGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>165 138 92 77 69 64 45 39 37 33 31 29 26 26 22 19 16 16 15 14 11 5 4 3 2 2</canonical_bands>
                <polymorphic_bands>165 138 92 77 69 64 45 39 37 33 31 29 29 26 22 19 16 16 15 14 11 5 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAGTCTTGGAGAAACTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TATTATTGGAGTGATGTGTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGAGTCTTGGAGAAACTGAAATTTTCCGAATAAATATTGAGAGTATCTAAAAATCGAACACCTCTTTGTTGACATGGATCAGATCACCACCCTTGCATTGCAACTCTGCGTTCGTTATACCACTGGGTCCGTGACTTTGCAAAACGGATGCGAAATTGAAACCGGGAATTTGTATGCACTCAACTTTCAATGTGAAAGCGTATGGTCCAGCCGGTCCCATCTCTTTCAACACATCACTCCAATAATA</canonical_amplicon>
		<polymorphic_amplicon>AAGAGTCTTGGAGAAACTGAAATTTTCCGAATAAATATTGAGAGTATCTAAAAATCGAACACCTCTTTGTTGACATGGATCAGATCRCCACCCTTGCATTGCAACTCTGCGTTCGTTATACCACTGGGTCCGTGACTTTGCAAAACGGATGCGAAATTGAAACCGGGAATTTGTATGCACTCAACTTTCAATGTGAAAGCGTATGGTCCAGCCGGTCCCATCTCTTTCAACACATCACTCCAATAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11809</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>363802</contig_pos>
        <strand>+</strand>
        <context>CTGAAATTTT[C/T]CGAATAAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTTCCATTTTTCAAAAAATTTACAAGAGTCTTGGAGAAACTGAAATTTT</left_flank>
        <right_flank>CGAATAAATATTGAGAGTATCTAAAAATCGAACACCTCTTTGTTGACATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGCTTGCAATTAGTGTATTGAGCCACTCGGAACGTCTTGTGCCACGTGTCAGCTGAAGTATGGGTCAATAGGAAAGAGGGAATATAGATTTTTGAAATAGTTGGGATACAAATTTAGGTTCGGGTAATCTCAGGTGTGTTTCATTTTTCATTTATAAAATTGAATACCAAGCAACTAAAAGAACCCGGCAACGAAAAATAAAGTACCTATCCTGGTATCCAAGATGAACTTTTAAGTTAATTCAAAAATAAAACTGATCGCAGAAGGCTCCCGGTGAAGAACCTGAGAACCAAGAGAGACTTTTATACTCTGTTTTGTAGCTAATTCATTTTTTGACTCGACTCACGTGTATACAATTTGGATGCGTGGTAGAGATGATCAAGGAAATGGACAGTCTCTTCGTACTCCAGAACCTTCAATTCCATTCGATTTGGCTTGGTCGGCGTTGGCTTCCATTTTTCAAAAAATTTACAAGAGTCTTGGAGAAACTGAAATTTTCCGAATAAATATTGAGAGTATCTAAAAATCGAACACCTCTTTGTTGACATGGATCAGATCACCACCCTTGCATTGCAACTCTGCGTTCGTTATACCACTGGGTCCGTGACTTTGCAAAACGGATGCGAAATTGAAACCGGGAATTTGTATGCACTCAACTTTCAATGTGAAAGCGTATGGTCCAGCCGGTCCCATCTCTTTCAACACATCACTCCAATAATAGCACGTTGGAAAGCAAATTGTTCGTTGCACAGTATTCAAATATCGTTCGTGAGTTCTCCGAGGAAGTCTTGTCGCATGTGAAAACTTCTGACTACCGAACTCGATTTTCCACAATTGAGTTTCTCCCGGTTGGAAATTTCCATGAAGCATTAATTGTAGACAAAGGTACTCAACACCAGAATACGTCTTTCGATGGAGACTCGTCGTCCAGAACATTCCATTCTTGGTCTTGAAATTTTTGAATACCGGAGGACCGCGAGACTGGTGGTAGATCATAAT</canonical>
            <polymorphic>GCGCTTGCAATTAGTGTATTGAGCCACTCGGAACGTCTTGTGCCACGTGTCAGCTGAAGTATGGGTCAATAGGAAAGAGGGAATATAGATTTTTGAAATAGTTGGGATACAAATTTAGGTTCGGGTAATCTCAGGTGTGTTTCATTTTTCATTTATAAAATTGAATACCAAGCAACTAAAAGAACCCGGCAACGAAAAATAAAGTACCTATCCTGGTATCCAAGATGAACTTTTAAGTTAATTCAAAAATAAAACTGATCGCAGAAGGCTCCCGGTGAAGAACCTGAGAACCAAGAGAGACTTTTATACTCTGTTTTGTAGCTAATTCATTTTTTGACTCGACTCACGTGTATACAATTTGGATGCGTGGTAGAGATGATCAAGGAAATGGACAGTCTCTTCGTACTCCAGAACCTTCAATTCCATTCGATTTGGCTTGGTCGGCGTTGGCTTCCATTTTTCAAAAAATTTACAAGAGTCTTGGAGAAACTGAAATTTTYCGAATAAATATTGAGAGTATCTAAAAATCGAACACCTCTTTGTTGACATGGATCAGATCACCACCCTTGCATTGCAACTCTGCGTTCGTTATACCACTGGGTCCGTGACTTTGCAAAACGGATGCGAAATTGAAACCGGGAATTTGTATGCACTCAACTTTCAATGTGAAAGCGTATGGTCCAGCCGGTCCCATCTCTTTCAACACATCACTCCAATAATAGCACGTTGGAAAGCAAATTGTTCGTTGCACAGTATTCAAATATCGTTCGTGAGTTCTCCGAGGAAGTCTTGTCGCATGTGAAAACTTCTGACTACCGAACTCGATTTTCCACAATTGAGTTTCTCCCGGTTGGAAATTTCCATGAAGCATTAATTGTAGACAAAGGTACTCAACACCAGAATACGTCTTTCGATGGAGACTCGTCGTCCAGAACATTCCATTCTTGGTCTTGAAATTTTTGAATACCGGAGGACCGCGAGACTGGTGGTAGATCATAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>471 225 190 54 30 30</canonical_bands>
                <polymorphic_bands>525 225 190 30 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGTTTTGTAGCTAATTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>ATCTGATCCATGTCAACAAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTGTTTTGTAGCTAATTCATTTTTTGACTCGACTCACGTGTATACAATTTGGATGCGTGGTAGAGATGATCAAGGAAATGGACAGTCTCTTCGTACTCCAGAACCTTCAATTCCATTCGATTTGGCTTGGTCGGCGTTGGCTTCCATTTTTCAAAAAATTTACAAGAGTCTTGGAGAAACTGAAATTTTCCGAATAAATATTGAGAGTATCTAAAAATCGAACACCTCTTTGTTGACATGGATCAGAT</canonical_amplicon>
		<polymorphic_amplicon>TCTGTTTTGTAGCTAATTCATTTTTTGACTCGACTCACGTGTATACAATTTGGATGCGTGGTAGAGATGATCAAGGAAATGGACAGTCTCTTCGTACTCCAGAACCTTCAATTCCATTCGATTTGGCTTGGTCGGCGTTGGCTTCCATTTTTCAAAAAATTTACAAGAGTCTTGGAGAAACTGAAATTTTYCGAATAAATATTGAGAGTATCTAAAAATCGAACACCTCTTTGTTGACATGGATCAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11810</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>402025</contig_pos>
        <strand>+</strand>
        <context>TTATCAGTTG[A/G]TGCTGAACCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATGTGACATTTGTTCTACCGTCCTCCTAGAGATCTTGATTTATCAGTTG</left_flank>
        <right_flank>TGCTGAACCGATTGCGCTGTGATCTATCAATTCAACGATCATCCAAATGC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGTGACTTGATGGGTTACTGTAGATGATGTAACAAACAACCGGACGGCAGATACCTAGACAAATGTTGAGGACGCTCCTATCCTATAGCTGAGCAATATCTTTTAAGATCTTATCAGCTGAAAAATAGCTCCGGATTCTTTTTTCTGTCACAAAAATACTTCAGTAACTCGGTATTACACACTTTTTACGATTGCAACAACCAACGAAACTTGTAAACAAAAAAAGGGGATAGAACTACAATTCGCCGTAAAAACTGTTATAGAAGGACCCTTGAGCTGAGCTCAATTATCTCGGCTCCTGTAAGAGATATCAAAAACGTATCAACTGATAAAATGTTTGTGGCATTATGATAAGCAATTTATCAGTTGACAACTTTTTCTATCTTTTAAAGGAGCCCAGATAATTGAGCTCAAAATTGACGTGGGCATATATTCGAGGAAATACGGTATGTGACATTTGTTCTACCGTCCTCCTAGAGATCTTGATTTATCAGTTGATGCTGAACCGATTGCGCTGTGATCTATCAATTCAACGATCATCCAAATGCACTTTCCAAAAAACTATCTCAAAACATTAAATAGAACTGCTTCCATAGATCTTGGATCTCAATGGATCTCAATGTTTCATTGATCCTCCTGCCCTTTTTGTAGCTTATGCTCAGATCATCACCAACATGCCCACGAGATTGAAATCAGAAACCGTAGAATCTCCATATTTTCTATACCACCTCCCTCCTCTTCACCTTCTACATCATAGAGCTTTCATCTATCGCCCCGCCCCTTCCTTCTCTGTCGTTTCCTCCGTCAAGAAGTGGAGACTCCGCCCATTTTTTGGTCTCTCTTTAAAAACACCGGTCTGAGCACTACTCTTCATTATCGTGAGCCCGTCCCCATGCTCTCCAAAACTGCTATTCTGGTGTCTTGCTTGGCTCTAGCCACCTCGGGCTTCAGTGTCCGCCCATCGTCGAAGAACACGGTCCAAGACGCTCATGAGCAGC</canonical>
            <polymorphic>TTCGTGACTTGATGGGTTACTGTAGATGATGTAACAAACAACCGGACGGCAGATACCTAGACAAATGTTGAGGACGCTCCTATCCTATAGCTGAGCAATATCTTTTAAGATCTTATCAGCTGAAAAATAGCTCCGGATTCTTTTTTCTGTCACAAAAATACTTCAGTAACTCGGTATTACACACTTTTTACGATTGCAACAACCAACGAAACTTGTAAACAAAAAAAGGGGATAGAACTACAATTCGCCGTAAAAACTGTTATAGAAGGACCCTTGAGCTGAGCTCAATTATCTCGGCTCCTGTAAGAGATATCAAAAACGTATCAACTGATAAAATGTTTGTGGCATTATGATAAGCAATTTATCAGTTGACAACTTTTTCTATCTTTTAAAGGAGCCCAGATAATTGAGCTCAAAATTGACGTGGGCATATATTCGAGGAAATACGGTATGTGACATTTGTTCTACCGTCCTCCTAGAGATCTTGATTTATCAGTTGRTGCTGAACCGATTGCGCTGTGATCTATCAATTCAACGATCATCCAAATGCACTTTCCAAAAAACTATCTCAAAACATTAAATAGAACTGCTTCCATAGATCTTGGATCTCAATGGATCTCAATGTTTCATTGATCCTCCTGCCCTTTTTGTAGCTTATGCTCAGATCATCACCAACATGCCCACGAGATTGAAATCAGAAACCGTAGAATCTCCATATTTTCTATACCACCTCCCTCCTCTTCACCTTCTACATCATAGAGCTTTCATCTATCGCCCCGCCCCTTCCTTCTCTGTCGTTTCCTCCGTCAAGAAGTGGAGACTCCGCCCATTTTTTGGTCTCTCTTTAAAAACACCGGTCTGAGCACTACTCTTCATTATCGTGAGCCCGTCCCCATGCTCTCCAAAACTGCTATTCTGGTGTCTTGCTTGGCTCTAGCCACCTCGGGCTTCAGTGTCCGCCCATCGTCGAAGAACACGGTCCAAGACGCTCATGAGCAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATACGGTATGTGACATTTGTT</pcr_primer_p1>
		<pcr_primer_p2>GATCTGAGCATAAGCTACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>AAATACGGTATGTGACATTTGTTCTACCGTCCTCCTAGAGATCTTGATTTATCAGTTGATGCTGAACCGATTGCGCTGTGATCTATCAATTCAACGATCATCCAAATGCACTTTCCAAAAAACTATCTCAAAACATTAAATAGAACTGCTTCCATAGATCTTGGATCTCAATGGATCTCAATGTTTCATTGATCCTCCTGCCCTTTTTGTAGCTTATGCTCAGATC</canonical_amplicon>
		<polymorphic_amplicon>AAATACGGTATGTGACATTTGTTCTACCGTCCTCCTAGAGATCTTGATTTATCAGTTGRTGCTGAACCGATTGCGCTGTGATCTATCAATTCAACGATCATCCAAATGCACTTTCCAAAAAACTATCTCAAAACATTAAATAGAACTGCTTCCATAGATCTTGGATCTCAATGGATCTCAATGTTTCATTGATCCTCCTGCCCTTTTTGTAGCTTATGCTCAGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11811</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>402057</contig_pos>
        <strand>+</strand>
        <context>ATCTATCAAT[C/T]CAACGATCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTTGATTTATCAGTTGATGCTGAACCGATTGCGCTGTGATCTATCAAT</left_flank>
        <right_flank>CAACGATCATCCAAATGCACTTTCCAAAAAACTATCTCAAAACATTAAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAAACAACCGGACGGCAGATACCTAGACAAATGTTGAGGACGCTCCTATCCTATAGCTGAGCAATATCTTTTAAGATCTTATCAGCTGAAAAATAGCTCCGGATTCTTTTTTCTGTCACAAAAATACTTCAGTAACTCGGTATTACACACTTTTTACGATTGCAACAACCAACGAAACTTGTAAACAAAAAAAGGGGATAGAACTACAATTCGCCGTAAAAACTGTTATAGAAGGACCCTTGAGCTGAGCTCAATTATCTCGGCTCCTGTAAGAGATATCAAAAACGTATCAACTGATAAAATGTTTGTGGCATTATGATAAGCAATTTATCAGTTGACAACTTTTTCTATCTTTTAAAGGAGCCCAGATAATTGAGCTCAAAATTGACGTGGGCATATATTCGAGGAAATACGGTATGTGACATTTGTTCTACCGTCCTCCTAGAGATCTTGATTTATCAGTTGATGCTGAACCGATTGCGCTGTGATCTATCAATTCAACGATCATCCAAATGCACTTTCCAAAAAACTATCTCAAAACATTAAATAGAACTGCTTCCATAGATCTTGGATCTCAATGGATCTCAATGTTTCATTGATCCTCCTGCCCTTTTTGTAGCTTATGCTCAGATCATCACCAACATGCCCACGAGATTGAAATCAGAAACCGTAGAATCTCCATATTTTCTATACCACCTCCCTCCTCTTCACCTTCTACATCATAGAGCTTTCATCTATCGCCCCGCCCCTTCCTTCTCTGTCGTTTCCTCCGTCAAGAAGTGGAGACTCCGCCCATTTTTTGGTCTCTCTTTAAAAACACCGGTCTGAGCACTACTCTTCATTATCGTGAGCCCGTCCCCATGCTCTCCAAAACTGCTATTCTGGTGTCTTGCTTGGCTCTAGCCACCTCGGGCTTCAGTGTCCGCCCATCGTCGAAGAACACGGTCCAAGACGCTCATGAGCAGCTGACCAAGAAGATTCGATGCTGGGAGCCGGTC</canonical>
            <polymorphic>AACAAACAACCGGACGGCAGATACCTAGACAAATGTTGAGGACGCTCCTATCCTATAGCTGAGCAATATCTTTTAAGATCTTATCAGCTGAAAAATAGCTCCGGATTCTTTTTTCTGTCACAAAAATACTTCAGTAACTCGGTATTACACACTTTTTACGATTGCAACAACCAACGAAACTTGTAAACAAAAAAAGGGGATAGAACTACAATTCGCCGTAAAAACTGTTATAGAAGGACCCTTGAGCTGAGCTCAATTATCTCGGCTCCTGTAAGAGATATCAAAAACGTATCAACTGATAAAATGTTTGTGGCATTATGATAAGCAATTTATCAGTTGACAACTTTTTCTATCTTTTAAAGGAGCCCAGATAATTGAGCTCAAAATTGACGTGGGCATATATTCGAGGAAATACGGTATGTGACATTTGTTCTACCGTCCTCCTAGAGATCTTGATTTATCAGTTGATGCTGAACCGATTGCGCTGTGATCTATCAATYCAACGATCATCCAAATGCACTTTCCAAAAAACTATCTCAAAACATTAAATAGAACTGCTTCCATAGATCTTGGATCTCAATGGATCTCAATGTTTCATTGATCCTCCTGCCCTTTTTGTAGCTTATGCTCAGATCATCACCAACATGCCCACGAGATTGAAATCAGAAACCGTAGAATCTCCATATTTTCTATACCACCTCCCTCCTCTTCACCTTCTACATCATAGAGCTTTCATCTATCGCCCCGCCCCTTCCTTCTCTGTCGTTTCCTCCGTCAAGAAGTGGAGACTCCGCCCATTTTTTGGTCTCTCTTTAAAAACACCGGTCTGAGCACTACTCTTCATTATCGTGAGCCCGTCCCCATGCTCTCCAAAACTGCTATTCTGGTGTCTTGCTTGGCTCTAGCCACCTCGGGCTTCAGTGTCCGCCCATCGTCGAAGAACACGGTCCAAGACGCTCATGAGCAGCTGACCAAGAAGATTCGATGCTGGGAGCCGGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>504 209 112 72 46 45 12</canonical_bands>
                <polymorphic_bands>616 209 72 46 45 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCTACCGTCCTCCTAGAGAT</pcr_primer_p1>
		<pcr_primer_p2>ATTCTACGGTTTCTGATTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTCTACCGTCCTCCTAGAGATCTTGATTTATCAGTTGATGCTGAACCGATTGCGCTGTGATCTATCAATTCAACGATCATCCAAATGCACTTTCCAAAAAACTATCTCAAAACATTAAATAGAACTGCTTCCATAGATCTTGGATCTCAATGGATCTCAATGTTTCATTGATCCTCCTGCCCTTTTTGTAGCTTATGCTCAGATCATCACCAACATGCCCACGAGATTGAAATCAGAAACCGTAGAAT</canonical_amplicon>
		<polymorphic_amplicon>GTTCTACCGTCCTCCTAGAGATCTTGATTTATCAGTTGATGCTGAACCGATTGCGCTGTGATCTATCAATYCAACGATCATCCAAATGCACTTTCCAAAAAACTATCTCAAAACATTAAATAGAACTGCTTCCATAGATCTTGGATCTCAATGGATCTCAATGTTTCATTGATCCTCCTGCCCTTTTTGTAGCTTATGCTCAGATCATCACCAACATGCCCACGAGATTGAAATCAGAAACCGTAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11812</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>402312</contig_pos>
        <strand>+</strand>
        <context>CCGCCCCTTC[C/T]TTCTCTRTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTCTTCACCTTCTACATCATAGAGCTTTCATCTATCGCCCCGCCCCTTC</left_flank>
        <right_flank>TTCTCTGTCGTTTCCTCCGTCAAGAAGTGGAGACTCCGCCCATTTTTTGG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATCTCGGCTCCTGTAAGAGATATCAAAAACGTATCAACTGATAAAATGTTTGTGGCATTATGATAAGCAATTTATCAGTTGACAACTTTTTCTATCTTTTAAAGGAGCCCAGATAATTGAGCTCAAAATTGACGTGGGCATATATTCGAGGAAATACGGTATGTGACATTTGTTCTACCGTCCTCCTAGAGATCTTGATTTATCAGTTGATGCTGAACCGATTGCGCTGTGATCTATCAATTCAACGATCATCCAAATGCACTTTCCAAAAAACTATCTCAAAACATTAAATAGAACTGCTTCCATAGATCTTGGATCTCAATGGATCTCAATGTTTCATTGATCCTCCTGCCCTTTTTGTAGCTTATGCTCAGATCATCACCAACATGCCCACGAGATTGAAATCAGAAACCGTAGAATCTCCATATTTTCTATACCACCTCCCTCCTCTTCACCTTCTACATCATAGAGCTTTCATCTATCGCCCCGCCCCTTCCTTCTCTGTCGTTTCCTCCGTCAAGAAGTGGAGACTCCGCCCATTTTTTGGTCTCTCTTTAAAAACACCGGTCTGAGCACTACTCTTCATTATCGTGAGCCCGTCCCCATGCTCTCCAAAACTGCTATTCTGGTGTCTTGCTTGGCTCTAGCCACCTCGGGCTTCAGTGTCCGCCCATCGTCGAAGAACACGGTCCAAGACGCTCATGAGCAGCTGACCAAGAAGATTCGATGCTGGGAGCCGGTCGAGGAGAACATCGCTGGTACCGAATTCTCTGGACAGCACACACTCAGTGAGCCAATTTACGACCTGTGCTCCTACATGCCGGATCCAAAGGATTACAACAAAGGATACGTCAACGGAGTGGACATGGAAAGCGACGACTACACCAACGTCTTGAACCTCTACCAGATTGTTCACAAAGGACACGCCATGCTCAATGTCTGTCTTCAAGAGGTGAGTAGTTATAGAAATTCCGTTCAGAAAAATATAACAAACTTT</canonical>
            <polymorphic>ATTATCTCGGCTCCTGTAAGAGATATCAAAAACGTATCAACTGATAAAATGTTTGTGGCATTATGATAAGCAATTTATCAGTTGACAACTTTTTCTATCTTTTAAAGGAGCCCAGATAATTGAGCTCAAAATTGACGTGGGCATATATTCGAGGAAATACGGTATGTGACATTTGTTCTACCGTCCTCCTAGAGATCTTGATTTATCAGTTGATGCTGAACCGATTGCGCTGTGATCTATCAATTCAACGATCATCCAAATGCACTTTCCAAAAAACTATCTCAAAACATTAAATAGAACTGCTTCCATAGATCTTGGATCTCAATGGATCTCAATGTTTCATTGATCCTCCTGCCCTTTTTGTAGCTTATGCTCAGATCATCACCAACATGCCCACGAGATTGAAATCAGAAACCGTAGAATCTCCATATTTTCTATACCACCTCCCTCCTCTTCACCTTCTACATCATAGAGCTTTCATCTATCGCCCCGCCCCTTCYTTCTCTGTCGTTTCCTCCGTCAAGAAGTGGAGACTCCGCCCATTTTTTGGTCTCTCTTTAAAAACACCGGTCTGAGCACTACTCTTCATTATCGTGAGCCCGTCCCCATGCTCTCCAAAACTGCTATTCTGGTGTCTTGCTTGGCTCTAGCCACCTCGGGCTTCAGTGTCCGCCCATCGTCGAAGAACACGGTCCAAGACGCTCATGAGCAGCTGACCAAGAAGATTCGATGCTGGGAGCCGGTCGAGGAGAACATCGCTGGTACCGAATTCTCTGGACAGCACACACTCAGTGAGCCAATTTACGACCTGTGCTCCTACATGCCGGATCCAAAGGATTACAACAAAGGATACGTCAACGGAGTGGACATGGAAAGCGACGACTACACCAACGTCTTGAACCTCTACCAGATTGTTCACAAAGGACACGCCATGCTCAATGTCTGTCTTCAAGAGGTGAGTAGTTATAGAAATTCCGTTCAGAAAAATATAACAAACTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCTCAATGGATCTCAATGTT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTTTAAAGAGAGACCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATCTCAATGGATCTCAATGTTTCATTGATCCTCCTGCCCTTTTTGTAGCTTATGCTCAGATCATCACCAACATGCCCACGAGATTGAAATCAGAAACCGTAGAATCTCCATATTTTCTATACCACCTCCCTCCTCTTCACCTTCTACATCATAGAGCTTTCATCTATCGCCCCGCCCCTTCCTTCTCTGTCGTTTCCTCCGTCAAGAAGTGGAGACTCCGCCCATTTTTTGGTCTCTCTTTAAAAACA</canonical_amplicon>
		<polymorphic_amplicon>GATCTCAATGGATCTCAATGTTTCATTGATCCTCCTGCCCTTTTTGTAGCTTATGCTCAGATCATCACCAACATGCCCACGAGATTGAAATCAGAAACCGTAGAATCTCCATATTTTCTATACCACCTCCCTCCTCTTCACCTTCTACATCATAGAGCTTTCATCTATCGCCCCGCCCCTTCYTTCTCTGTCGTTTCCTCCGTCAAGAAGTGGAGACTCCGCCCATTTTTTGGTCTCTCTTTAAAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11813</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>402319</contig_pos>
        <strand>+</strand>
        <context>TTCYTTCTCT[A/G]TCGTTTCCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCTTCTACATCATAGAGCTTTCATCTATCGCCCCGCCCCTTCCTTCTCT</left_flank>
        <right_flank>TCGTTTCCTCCGTCAAGAAGTGGAGACTCCGCCCATTTTTTGGTCTCTCT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGCTCCTGTAAGAGATATCAAAAACGTATCAACTGATAAAATGTTTGTGGCATTATGATAAGCAATTTATCAGTTGACAACTTTTTCTATCTTTTAAAGGAGCCCAGATAATTGAGCTCAAAATTGACGTGGGCATATATTCGAGGAAATACGGTATGTGACATTTGTTCTACCGTCCTCCTAGAGATCTTGATTTATCAGTTGATGCTGAACCGATTGCGCTGTGATCTATCAATTCAACGATCATCCAAATGCACTTTCCAAAAAACTATCTCAAAACATTAAATAGAACTGCTTCCATAGATCTTGGATCTCAATGGATCTCAATGTTTCATTGATCCTCCTGCCCTTTTTGTAGCTTATGCTCAGATCATCACCAACATGCCCACGAGATTGAAATCAGAAACCGTAGAATCTCCATATTTTCTATACCACCTCCCTCCTCTTCACCTTCTACATCATAGAGCTTTCATCTATCGCCCCGCCCCTTCCTTCTCTGTCGTTTCCTCCGTCAAGAAGTGGAGACTCCGCCCATTTTTTGGTCTCTCTTTAAAAACACCGGTCTGAGCACTACTCTTCATTATCGTGAGCCCGTCCCCATGCTCTCCAAAACTGCTATTCTGGTGTCTTGCTTGGCTCTAGCCACCTCGGGCTTCAGTGTCCGCCCATCGTCGAAGAACACGGTCCAAGACGCTCATGAGCAGCTGACCAAGAAGATTCGATGCTGGGAGCCGGTCGAGGAGAACATCGCTGGTACCGAATTCTCTGGACAGCACACACTCAGTGAGCCAATTTACGACCTGTGCTCCTACATGCCGGATCCAAAGGATTACAACAAAGGATACGTCAACGGAGTGGACATGGAAAGCGACGACTACACCAACGTCTTGAACCTCTACCAGATTGTTCACAAAGGACACGCCATGCTCAATGTCTGTCTTCAAGAGGTGAGTAGTTATAGAAATTCCGTTCAGAAAAATATAACAAACTTTCAGGCCT</canonical>
            <polymorphic>CGGCTCCTGTAAGAGATATCAAAAACGTATCAACTGATAAAATGTTTGTGGCATTATGATAAGCAATTTATCAGTTGACAACTTTTTCTATCTTTTAAAGGAGCCCAGATAATTGAGCTCAAAATTGACGTGGGCATATATTCGAGGAAATACGGTATGTGACATTTGTTCTACCGTCCTCCTAGAGATCTTGATTTATCAGTTGATGCTGAACCGATTGCGCTGTGATCTATCAATTCAACGATCATCCAAATGCACTTTCCAAAAAACTATCTCAAAACATTAAATAGAACTGCTTCCATAGATCTTGGATCTCAATGGATCTCAATGTTTCATTGATCCTCCTGCCCTTTTTGTAGCTTATGCTCAGATCATCACCAACATGCCCACGAGATTGAAATCAGAAACCGTAGAATCTCCATATTTTCTATACCACCTCCCTCCTCTTCACCTTCTACATCATAGAGCTTTCATCTATCGCCCCGCCCCTTCCTTCTCTRTCGTTTCCTCCGTCAAGAAGTGGAGACTCCGCCCATTTTTTGGTCTCTCTTTAAAAACACCGGTCTGAGCACTACTCTTCATTATCGTGAGCCCGTCCCCATGCTCTCCAAAACTGCTATTCTGGTGTCTTGCTTGGCTCTAGCCACCTCGGGCTTCAGTGTCCGCCCATCGTCGAAGAACACGGTCCAAGACGCTCATGAGCAGCTGACCAAGAAGATTCGATGCTGGGAGCCGGTCGAGGAGAACATCGCTGGTACCGAATTCTCTGGACAGCACACACTCAGTGAGCCAATTTACGACCTGTGCTCCTACATGCCGGATCCAAAGGATTACAACAAAGGATACGTCAACGGAGTGGACATGGAAAGCGACGACTACACCAACGTCTTGAACCTCTACCAGATTGTTCACAAAGGACACGCCATGCTCAATGTCTGTCTTCAAGAGGTGAGTAGTTATAGAAATTCCGTTCAGAAAAATATAACAAACTTTCAGGCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCTCAATGGATCTCAATGTT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTTTAAAGAGAGACCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATCTCAATGGATCTCAATGTTTCATTGATCCTCCTGCCCTTTTTGTAGCTTATGCTCAGATCATCACCAACATGCCCACGAGATTGAAATCAGAAACCGTAGAATCTCCATATTTTCTATACCACCTCCCTCCTCTTCACCTTCTACATCATAGAGCTTTCATCTATCGCCCCGCCCCTTCCTTCTCTGTCGTTTCCTCCGTCAAGAAGTGGAGACTCCGCCCATTTTTTGGTCTCTCTTTAAAAACA</canonical_amplicon>
		<polymorphic_amplicon>GATCTCAATGGATCTCAATGTTTCATTGATCCTCCTGCCCTTTTTGTAGCTTATGCTCAGATCATCACCAACATGCCCACGAGATTGAAATCAGAAACCGTAGAATCTCCATATTTTCTATACCACCTCCCTCCTCTTCACCTTCTACATCATAGAGCTTTCATCTATCGCCCCGCCCCTTCCTTCTCTRTCGTTTCCTCCGTCAAGAAGTGGAGACTCCGCCCATTTTTTGGTCTCTCTTTAAAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11814</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>403471</contig_pos>
        <strand>+</strand>
        <context>TCCGCGAAAT[C/T]TTTGCATTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTGAACAATAGGCCATCAATTCCCGATGGTTCCATTTTTTCCGCGAAAT</left_flank>
        <right_flank>TTTGCATTGAATACCACCCTTCAACGTAGGTAAATCGCCTCTGATTCCTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCCTATGATACTCGTTTCCCAGTTCTCATGCTCTCTACAGTAATCTATCCCATTGAAAAGTTTTCCATTTCCCAATCGTTCTGATACATATACCGTGATACTAATGAAACACACTCGATTCGAATAAAGATGAGACTGTTAATGCAAAAATCTGGTTTTGTTTTCTATGGAACAAGTTGGTTTCGATTCTTCAGGAGCTCAGGATATCAGATCCGCTGCTCAGAGAATCTGGTTGTTTCAGATGAAGTCAGATAAGGAACTGTGCGGCTGGCTTAACCCGTTCATTTAAAGTGTTAGGATACTTCCTTTCAGGCTATTCAGCGTTTTCAGATTTTCTTCAGAAGCTCATCAGCTCAGATCCGAGGAATTCAAACTTCTAGTTCTTGAAGACGACTACACTACAGCATACTCTACAGTATACTCCGAATCAATTACCCTATTGTAAAATCCTGAACAATAGGCCATCAATTCCCGATGGTTCCATTTTTTCCGCGAAATCTTTGCATTGAATACCACCCTTCAACGTAGGTAAATCGCCTCTGATTCCTTCCATTCATACCCTCCCCTCTTCTCCACGAATAATCTTGGATTAATTGTCCTGTATTATAATCACACGGTCCATTCTTCTCCTTCTAATCCCCCACACTCTCACCATTGTCATCCCCAAAAAGTGGCACAAACAGGTGTGACGTTCCTTTGAGAAGCACTCGACGAATTCCATTATAGATGGATCTTCTTTTTCTTTTTCTGAGAGCTCTCGTCAGAAATTCGTCTTGGGTGGTCGAGAGCCAAAAAAGCAACAAAAAGAGGAAAAGTGAGTTCCCGCTGTGTGCGGCCAATGTCAGGGAGGCACAGAATGAGGTTAATCAAGAAGAAGAAGAAGCAATTATGGAAATTGCAAGAGGCAGTGAGAAAAAGAAGGCTAAAATTGAAAGAAGAGAAGGAATTGCATTGGTGAATCATAGAATTATAGAGATATCTGTTTCAGGGACAGTTACC</canonical>
            <polymorphic>CCCCTATGATACTCGTTTCCCAGTTCTCATGCTCTCTACAGTAATCTATCCCATTGAAAAGTTTTCCATTTCCCAATCGTTCTGATACATATACCGTGATACTAATGAAACACACTCGATTCGAATAAAGATGAGACTGTTAATGCAAAAATCTGGTTTTGTTTTCTATGGAACAAGTTGGTTTCGATTCTTCAGGAGCTCAGGATATCAGATCCGCTGCTCAGAGAATCTGGTTGTTTCAGATGAAGTCAGATAAGGAACTGTGCGGCTGGCTTAACCCGTTCATTTAAAGTGTTAGGATACTTCCTTTCAGGCTATTCAGCGTTTTCAGATTTTCTTCAGAAGCTCATCAGCTCAGATCCGAGGAATTCAAACTTCTAGTTCTTGAAGACGACTACACTACAGCATACTCTACAGTATACTCCGAATCAATTACCCTATTGTAAAATCCTGAACAATAGGCCATCAATTCCCGATGGTTCCATTTTTTCCGCGAAATYTTTGCATTGAATACCACCCTTCAACGTAGGTAAATCGCCTCTGATTCCTTCCATTCATACCCTCCCCTCTTCTCCACGAATAATCTTGGATTAATTGTCCTGTATTATAATCACACGGTCCATTCTTCTCCTTCTAATCCCCCACACTCTCACCATTGTCATCCCCAAAAAGTGGCACAAACAGGTGTGACGTTCCTTTGAGAAGCACTCGACGAATTCCATTATAGATGGATCTTCTTTTTCTTTTTCTGAGAGCTCTCGTCAGAAATTCGTCTTGGGTGGTCGAGAGCCAAAAAAGCAACAAAAAGAGGAAAAGTGAGTTCCCGCTGTGTGCGGCCAATGTCAGGGAGGCACAGAATGAGGTTAATCAAGAAGAAGAAGAAGCAATTATGGAAATTGCAAGAGGCAGTGAGAAAAAGAAGGCTAAAATTGAAAGAAGAGAAGGAATTGCATTGGTGAATCATAGAATTATAGAGATATCTGTTTCAGGGACAGTTACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTCAGCGTTTTCAGATTTT</pcr_primer_p1>
		<pcr_primer_p2>GTATGAATGGAAGGAATCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTATTCAGCGTTTTCAGATTTTCTTCAGAAGCTCATCAGCTCAGATCCGAGGAATTCAAACTTCTAGTTCTTGAAGACGACTACACTACAGCATACTCTACAGTATACTCCGAATCAATTACCCTATTGTAAAATCCTGAACAATAGGCCATCAATTCCCGATGGTTCCATTTTTTCCGCGAAATCTTTGCATTGAATACCACCCTTCAACGTAGGTAAATCGCCTCTGATTCCTTCCATTCATAC</canonical_amplicon>
		<polymorphic_amplicon>CTATTCAGCGTTTTCAGATTTTCTTCAGAAGCTCATCAGCTCAGATCCGAGGAATTCAAACTTCTAGTTCTTGAAGACGACTACACTACAGCATACTCTACAGTATACTCCGAATCAATTACCCTATTGTAAAATCCTGAACAATAGGCCATCAATTCCCGATGGTTCCATTTTTTCCGCGAAATYTTTGCATTGAATACCACCCTTCAACGTAGGTAAATCGCCTCTGATTCCTTCCATTCATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11816</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>460125</contig_pos>
        <strand>+</strand>
        <context>TAGCCATGAT[G/T]TTCTATAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACAAAAAAAAAGACAAAAAAACATAAGAAAGGAATGATGCTAGCCATGAT</left_flank>
        <right_flank>TTCTATAAAAGTTGTGAAGAGAGCAATAGACAGAAAAGAAAAGTGAATTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGACTTCGCGATGTTCACAGTTTCGGCACGAGTACATCAAAACGCGAGATTCCTTGTCTTCGCGTGGATAGAGCATGTTGTTGCTGAAGAAAAACGATTTGATGGGCAAGATGGGAATTTAAAGGCTCACCACTCTGGACAGAATTTGATTCCGACGAATCCAGGCCCGCTCTTTCCATCGCCGTCGCTTGGCGCCGGCGAGAGACCCGCACTTGGATCATACATATCCTCGTCCTCATATTCTTGACTCATTTTTTGGCGCTGACCAATTACTCTATTTGAAATCCTGTAGACGAGAAATATTTGAAATATGGCGATGGTATAAAACCAAACGAAATACAAAGAAATTATCAAAATGACATTTTAAAATCCCCTTTTTTATATACACACCGACAGACGAAGAGAGAGGAAAACTAACGAAAAATATATATACAGGTTGCCCAAAGAGACAAAAAAAAAGACAAAAAAACATAAGAAAGGAATGATGCTAGCCATGATGTTCTATAAAAGTTGTGAAGAGAGCAATAGACAGAAAAGAAAAGTGAATTCAGTAAAAAAAAATTATTCATCCCAGTTGACCCATCCCTCTTCCTTCTTCTCGCTGCTATCAGGTCGTGGTGTCAATGGACCCTTCTCGTCGTCAGATGGAATCTCCTATAACTTTTCGAGAGCTTTCATTCACTTCCTTGACAAGATTTCACTAACCTCAACATTCTTCTCACTACAAACACTCCATTCCGATTGCGATGGACTCGTTGGCTCTTCCACAACCACCGCTGACGAGTCGGACGATGGTGACGACTTCTTCGACGACACTTCAGAAGATGTTTTTCTATTCGCCTTCTTTGGTGATTTAGTGTCTACATTCAATGCTTCGGATAGCGTGGATTTGTTCATTTCCTCCTCCATCTCAGCAACTTCGATCGCATAAAAATACCGTTTCCAGAATGTCTCATGAGTGACTTTAGCAGGAACAAGACTCGCGAAAACTTGACGAAG</canonical>
            <polymorphic>GCGACTTCGCGATGTTCACAGTTTCGGCACGAGTACATCAAAACGCGAGATTCCTTGTCTTCGCGTGGATAGAGCATGTTGTTGCTGAAGAAAAACGATTTGATGGGCAAGATGGGAATTTAAAGGCTCACCACTCTGGACAGAATTTGATTCCGACGAATCCAGGCCCGCTCTTTCCATCGCCGTCGCTTGGCGCCGGCGAGAGACCCGCACTTGGATCATACATATCCTCGTCCTCATATTCTTGACTCATTTTTTGGCGCTGACCAATTACTCTATTTGAAATCCTGTAGACGAGAAATATTTGAAATATGGCGATGGTATAAAACCAAACGAAATACAAAGAAATTATCAAAATGACATTTTAAAATCCCCTTTTTTATATACACACCGACAGACGAAGAGAGAGGAAAACTAACGAAAAATATATATACAGGTTGCCCAAAGAGACAAAAAAAAAGACAAAAAAACATAAGAAAGGAATGATGCTAGCCATGATKTTCTATAAAAGTTGTGAAGAGAGCAATAGACAGAAAAGAAAAGTGAATTCAGTAAAAAAAAATTATTCATCCCAGTTGACCCATCCCTCTTCCTTCTTCTCGCTGCTATCAGGTCGTGGTGTCAATGGACCCTTCTCGTCGTCAGATGGAATCTCCTATAACTTTTCGAGAGCTTTCATTCACTTCCTTGACAAGATTTCACTAACCTCAACATTCTTCTCACTACAAACACTCCATTCCGATTGCGATGGACTCGTTGGCTCTTCCACAACCACCGCTGACGAGTCGGACGATGGTGACGACTTCTTCGACGACACTTCAGAAGATGTTTTTCTATTCGCCTTCTTTGGTGATTTAGTGTCTACATTCAATGCTTCGGATAGCGTGGATTTGTTCATTTCCTCCTCCATCTCAGCAACTTCGATCGCATAAAAATACCGTTTCCAGAATGTCTCATGAGTGACTTTAGCAGGAACAAGACTCGCGAAAACTTGACGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATATATACAGGTTGCCCAAAGA</pcr_primer_p1>
		<pcr_primer_p2>GCTCTCGAAAAGTTATAGGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TATATATACAGGTTGCCCAAAGAGACAAAAAAAAAGACAAAAAAACATAAGAAAGGAATGATGCTAGCCATGATGTTCTATAAAAGTTGTGAAGAGAGCAATAGACAGAAAAGAAAAGTGAATTCAGTAAAAAAAAATTATTCATCCCAGTTGACCCATCCCTCTTCCTTCTTCTCGCTGCTATCAGGTCGTGGTGTCAATGGACCCTTCTCGTCGTCAGATGGAATCTCCTATAACTTTTCGAGAGC</canonical_amplicon>
		<polymorphic_amplicon>TATATATACAGGTTGCCCAAAGAGACAAAAAAAAAGACAAAAAAACATAAGAAAGGAATGATGCTAGCCATGATKTTCTATAAAAGTTGTGAAGAGAGCAATAGACAGAAAAGAAAAGTGAATTCAGTAAAAAAAAATTATTCATCCCAGTTGACCCATCCCTCTTCCTTCTTCTCGCTGCTATCAGGTCGTGGTGTCAATGGACCCTTCTCGTCGTCAGATGGAATCTCCTATAACTTTTCGAGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11817</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>461255</contig_pos>
        <strand>+</strand>
        <context>TCGCTGAATT[A/C]AAGAAGGATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTTGGCATTATTCAAAAAGTATCTACCAACCTTCTCTTTCGCTGAATT</left_flank>
        <right_flank>AAGAAGGATGCTCCCCATGATGATCCTTGATTGAGCCACGAGCTGGCAAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGAAATTTTCAATTTCGACAGGAAGGTCCTTCGGTCTTTCTTCGGCTTAATGACCTCAGTGAAATCATCTTCACCGGTTGTAGTCTCTTCCATTGCCAAATTTTTAACAGTGTCCGTGACAGTATCCACGATTTTGCTCATCCACCCGAAGCTCAATGAGCTGGAGCTCTCCAACTTTGGCTTTGGTTTCTCCGAAGTCTCCCCAGTCTCTTCTCCTTCTCCAGGAAGTGGTTTCTCTTCTTCACTCGGTGTCACCATCTTCTCGAAAATCTGAGCCTGTTGTTTCACAGCGCTCGCCGCGGTTCCGAATCCTTCCTTCGCCGCTGAAGCGAGATCGCTCACTTCGGCAGTCACAGCTTCTCCCAAATCATTCAAATCTTTCTTGACGAGGTCGAGTGTTGTCATCGTCTGGAATTATTCGTACTGACAGATATCTTTTGAATTCTATTTTTGGCATTATTCAAAAAGTATCTACCAACCTTCTCTTTCGCTGAATTAAAGAAGGATGCTCCCCATGATGATCCTTGATTGAGCCACGAGCTGGCAACTCCGAAACCGCCGAATCCACTTTCATCGGTGGTCGCCGCCGCCGGTTTCTCCTCAATTTTTTCTACTGTTGATGGTAGAACTTCCTCTTGTTTTGGGTCTGTCATCCTGGAAAAAAAAGAGATATTGAGCAGAATTCATGTGTTGCTCGAAACCAAATTATGTAGAAAAAGGGAGAACGAACGAATGGATGGGAAAACAAGGAAGATTTAATGAAAAATATGGAAAAAAAATAGACATAAACAGAAAGTGGAATGAGAGGAAGCATGAAGAAGAGTCGTCGAAAAGAGACGAAATGCCAGGAGAAAAAAAGGAAAAATCGTCATGTGAAGAATAGCGGCGGAGCGCACTTACCCAACCTGCGCTCTCTCCAAAAAGCATGCTGTTTCGCTGTTTTATAGAGATGCAGATTGTGGGAAAGATCATAATTTGAAAAAAAATCAGATGATTCT</canonical>
            <polymorphic>TCAGAAATTTTCAATTTCGACAGGAAGGTCCTTCGGTCTTTCTTCGGCTTAATGACCTCAGTGAAATCATCTTCACCGGTTGTAGTCTCTTCCATTGCCAAATTTTTAACAGTGTCCGTGACAGTATCCACGATTTTGCTCATCCACCCGAAGCTCAATGAGCTGGAGCTCTCCAACTTTGGCTTTGGTTTCTCCGAAGTCTCCCCAGTCTCTTCTCCTTCTCCAGGAAGTGGTTTCTCTTCTTCACTCGGTGTCACCATCTTCTCGAAAATCTGAGCCTGTTGTTTCACAGCGCTCGCCGCGGTTCCGAATCCTTCCTTCGCCGCTGAAGCGAGATCGCTCACTTCGGCAGTCACAGCTTCTCCCAAATCATTCAAATCTTTCTTGACGAGGTCGAGTGTTGTCATCGTCTGGAATTATTCGTACTGACAGATATCTTTTGAATTCTATTTTTGGCATTATTCAAAAAGTATCTACCAACCTTCTCTTTCGCTGAATTMAAGAAGGATGCTCCCCATGATGATCCTTGATTGAGCCACGAGCTGGCAACTCCGAAACCGCCGAATCCACTTTCATCGGTGGTCGCCGCCGCCGGTTTCTCCTCAATTTTTTCTACTGTTGATGGTAGAACTTCCTCTTGTTTTGGGTCTGTCATCCTGGAAAAAAAAGAGATATTGAGCAGAATTCATGTGTTGCTCGAAACCAAATTATGTAGAAAAAGGGAGAACGAACGAATGGATGGGAAAACAAGGAAGATTTAATGAAAAATATGGAAAAAAAATAGACATAAACAGAAAGTGGAATGAGAGGAAGCATGAAGAAGAGTCGTCGAAAAGAGACGAAATGCCAGGAGAAAAAAAGGAAAAATCGTCATGTGAAGAATAGCGGCGGAGCGCACTTACCCAACCTGCGCTCTCTCCAAAAAGCATGCTGTTTCGCTGTTTTATAGAGATGCAGATTGTGGGAAAGATCATAATTTGAAAAAAAATCAGATGATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>392 260 242 57 49</canonical_bands>
                <polymorphic_bands>652 242 57 49</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTGGAATTATTCGTACTGACA</pcr_primer_p1>
		<pcr_primer_p2>AAAACAAGAGGAAGTTCTACCAT</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>GTCTGGAATTATTCGTACTGACAGATATCTTTTGAATTCTATTTTTGGCATTATTCAAAAAGTATCTACCAACCTTCTCTTTCGCTGAATTAAAGAAGGATGCTCCCCATGATGATCCTTGATTGAGCCACGAGCTGGCAACTCCGAAACCGCCGAATCCACTTTCATCGGTGGTCGCCGCCGCCGGTTTCTCCTCAATTTTTTCTACTGTTGATGGTAGAACTTCCTCTTGTTTT</canonical_amplicon>
		<polymorphic_amplicon>GTCTGGAATTATTCGTACTGACAGATATCTTTTGAATTCTATTTTTGGCATTATTCAAAAAGTATCTACCAACCTTCTCTTTCGCTGAATTMAAGAAGGATGCTCCCCATGATGATCCTTGATTGAGCCACGAGCTGGCAACTCCGAAACCGCCGAATCCACTTTCATCGGTGGTCGCCGCCGCCGGTTTCTCCTCAATTTTTTCTACTGTTGATGGTAGAACTTCCTCTTGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11818</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>461202</contig_pos>
        <strand>+</strand>
        <context>CTTTTGAATT[A/C]TATTTTTGGC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTGTTGTCATCGTCTGGAATTATTCGTACTGACAGATATCTTTTGAATT</left_flank>
        <right_flank>TATTTTTGGCATTATTCAAAAAGTATCTACCAACCTTCTCTTTCGCTGAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAATTCCGAGTTTCCAGGCTCATTGAGATACGTCGCTTCATTCGATTGAATTTCAGAAATTTTCAATTTCGACAGGAAGGTCCTTCGGTCTTTCTTCGGCTTAATGACCTCAGTGAAATCATCTTCACCGGTTGTAGTCTCTTCCATTGCCAAATTTTTAACAGTGTCCGTGACAGTATCCACGATTTTGCTCATCCACCCGAAGCTCAATGAGCTGGAGCTCTCCAACTTTGGCTTTGGTTTCTCCGAAGTCTCCCCAGTCTCTTCTCCTTCTCCAGGAAGTGGTTTCTCTTCTTCACTCGGTGTCACCATCTTCTCGAAAATCTGAGCCTGTTGTTTCACAGCGCTCGCCGCGGTTCCGAATCCTTCCTTCGCCGCTGAAGCGAGATCGCTCACTTCGGCAGTCACAGCTTCTCCCAAATCATTCAAATCTTTCTTGACGAGGTCGAGTGTTGTCATCGTCTGGAATTATTCGTACTGACAGATATCTTTTGAATTCTATTTTTGGCATTATTCAAAAAGTATCTACCAACCTTCTCTTTCGCTGAATTAAAGAAGGATGCTCCCCATGATGATCCTTGATTGAGCCACGAGCTGGCAACTCCGAAACCGCCGAATCCACTTTCATCGGTGGTCGCCGCCGCCGGTTTCTCCTCAATTTTTTCTACTGTTGATGGTAGAACTTCCTCTTGTTTTGGGTCTGTCATCCTGGAAAAAAAAGAGATATTGAGCAGAATTCATGTGTTGCTCGAAACCAAATTATGTAGAAAAAGGGAGAACGAACGAATGGATGGGAAAACAAGGAAGATTTAATGAAAAATATGGAAAAAAAATAGACATAAACAGAAAGTGGAATGAGAGGAAGCATGAAGAAGAGTCGTCGAAAAGAGACGAAATGCCAGGAGAAAAAAAGGAAAAATCGTCATGTGAAGAATAGCGGCGGAGCGCACTTACCCAACCTGCGCTCTCTCCAAAAAGCATGCTGTTTCGCTGTTTTAT</canonical>
            <polymorphic>AGAATTCCGAGTTTCCAGGCTCATTGAGATACGTCGCTTCATTCGATTGAATTTCAGAAATTTTCAATTTCGACAGGAAGGTCCTTCGGTCTTTCTTCGGCTTAATGACCTCAGTGAAATCATCTTCACCGGTTGTAGTCTCTTCCATTGCCAAATTTTTAACAGTGTCCGTGACAGTATCCACGATTTTGCTCATCCACCCGAAGCTCAATGAGCTGGAGCTCTCCAACTTTGGCTTTGGTTTCTCCGAAGTCTCCCCAGTCTCTTCTCCTTCTCCAGGAAGTGGTTTCTCTTCTTCACTCGGTGTCACCATCTTCTCGAAAATCTGAGCCTGTTGTTTCACAGCGCTCGCCGCGGTTCCGAATCCTTCCTTCGCCGCTGAAGCGAGATCGCTCACTTCGGCAGTCACAGCTTCTCCCAAATCATTCAAATCTTTCTTGACGAGGTCGAGTGTTGTCATCGTCTGGAATTATTCGTACTGACAGATATCTTTTGAATTMTATTTTTGGCATTATTCAAAAAGTATCTACCAACCTTCTCTTTCGCTGAATTAAAGAAGGATGCTCCCCATGATGATCCTTGATTGAGCCACGAGCTGGCAACTCCGAAACCGCCGAATCCACTTTCATCGGTGGTCGCCGCCGCCGGTTTCTCCTCAATTTTTTCTACTGTTGATGGTAGAACTTCCTCTTGTTTTGGGTCTGTCATCCTGGAAAAAAAAGAGATATTGAGCAGAATTCATGTGTTGCTCGAAACCAAATTATGTAGAAAAAGGGAGAACGAACGAATGGATGGGAAAACAAGGAAGATTTAATGAAAAATATGGAAAAAAAATAGACATAAACAGAAAGTGGAATGAGAGGAAGCATGAAGAAGAGTCGTCGAAAAGAGACGAAATGCCAGGAGAAAAAAAGGAAAAATCGTCATGTGAAGAATAGCGGCGGAGCGCACTTACCCAACCTGCGCTCTCTCCAAAAAGCATGCTGTTTCGCTGTTTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>342 265 240 95 47 9 2</canonical_bands>
                <polymorphic_bands>582 265 95 47 9 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>493 265 240 2</canonical_bands>
                <polymorphic_bands>733 265 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATCTTTCTTGACGAGGT</pcr_primer_p1>
		<pcr_primer_p2>GTTCTACCATCAACAGTAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>CAAATCTTTCTTGACGAGGTCGAGTGTTGTCATCGTCTGGAATTATTCGTACTGACAGATATCTTTTGAATTCTATTTTTGGCATTATTCAAAAAGTATCTACCAACCTTCTCTTTCGCTGAATTAAAGAAGGATGCTCCCCATGATGATCCTTGATTGAGCCACGAGCTGGCAACTCCGAAACCGCCGAATCCACTTTCATCGGTGGTCGCCGCCGCCGGTTTCTCCTCAATTTTTTCTACTGTTGATGGTAGAAC</canonical_amplicon>
		<polymorphic_amplicon>CAAATCTTTCTTGACGAGGTCGAGTGTTGTCATCGTCTGGAATTATTCGTACTGACAGATATCTTTTGAATTMTATTTTTGGCATTATTCAAAAAGTATCTACCAACCTTCTCTTTCGCTGAATTAAAGAAGGATGCTCCCCATGATGATCCTTGATTGAGCCACGAGCTGGCAACTCCGAAACCGCCGAATCCACTTTCATCGGTGGTCGCCGCCGCCGGTTTCTCCTCAATTTTTTCTACTGTTGATGGTAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11819</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>460880</contig_pos>
        <strand>+</strand>
        <context>TCCGTGACAG[C/T]ATCCACGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCGGTTGTAGTCTCTTCCATTGCCAAATTTTTAACAGTGTCCGTGACAG</left_flank>
        <right_flank>ATCCACGATTTTGCTCATCCACCCGAAGCTCAATGAGCTGGAGCTCTCCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTGGCTCTTCCACAACCACCGCTGACGAGTCGGACGATGGTGACGACTTCTTCGACGACACTTCAGAAGATGTTTTTCTATTCGCCTTCTTTGGTGATTTAGTGTCTACATTCAATGCTTCGGATAGCGTGGATTTGTTCATTTCCTCCTCCATCTCAGCAACTTCGATCGCATAAAAATACCGTTTCCAGAATGTCTCATGAGTGACTTTAGCAGGAACAAGACTCGCGAAAACTTGACGAAGAGATGGGTTATTTGCCAAAAGGATATTGATTTCTCCGTCGTACTCGTCTAAATTGAAGCGAGAATTCCATCTTTCATAGAATTCCGAGTTTCCAGGCTCATTGAGATACGTCGCTTCATTCGATTGAATTTCAGAAATTTTCAATTTCGACAGGAAGGTCCTTCGGTCTTTCTTCGGCTTAATGACCTCAGTGAAATCATCTTCACCGGTTGTAGTCTCTTCCATTGCCAAATTTTTAACAGTGTCCGTGACAGTATCCACGATTTTGCTCATCCACCCGAAGCTCAATGAGCTGGAGCTCTCCAACTTTGGCTTTGGTTTCTCCGAAGTCTCCCCAGTCTCTTCTCCTTCTCCAGGAAGTGGTTTCTCTTCTTCACTCGGTGTCACCATCTTCTCGAAAATCTGAGCCTGTTGTTTCACAGCGCTCGCCGCGGTTCCGAATCCTTCCTTCGCCGCTGAAGCGAGATCGCTCACTTCGGCAGTCACAGCTTCTCCCAAATCATTCAAATCTTTCTTGACGAGGTCGAGTGTTGTCATCGTCTGGAATTATTCGTACTGACAGATATCTTTTGAATTCTATTTTTGGCATTATTCAAAAAGTATCTACCAACCTTCTCTTTCGCTGAATTAAAGAAGGATGCTCCCCATGATGATCCTTGATTGAGCCACGAGCTGGCAACTCCGAAACCGCCGAATCCACTTTCATCGGTGGTCGCCGCCGCCGGTTTCTCCTCAATTTTTTCTACTGTTGATGG</canonical>
            <polymorphic>GTTGGCTCTTCCACAACCACCGCTGACGAGTCGGACGATGGTGACGACTTCTTCGACGACACTTCAGAAGATGTTTTTCTATTCGCCTTCTTTGGTGATTTAGTGTCTACATTCAATGCTTCGGATAGCGTGGATTTGTTCATTTCCTCCTCCATCTCAGCAACTTCGATCGCATAAAAATACCGTTTCCAGAATGTCTCATGAGTGACTTTAGCAGGAACAAGACTCGCGAAAACTTGACGAAGAGATGGGTTATTTGCCAAAAGGATATTGATTTCTCCGTCGTACTCGTCTAAATTGAAGCGAGAATTCCATCTTTCATAGAATTCCGAGTTTCCAGGCTCATTGAGATACGTCGCTTCATTCGATTGAATTTCAGAAATTTTCAATTTCGACAGGAAGGTCCTTCGGTCTTTCTTCGGCTTAATGACCTCAGTGAAATCATCTTCACCGGTTGTAGTCTCTTCCATTGCCAAATTTTTAACAGTGTCCGTGACAGYATCCACGATTTTGCTCATCCACCCGAAGCTCAATGAGCTGGAGCTCTCCAACTTTGGCTTTGGTTTCTCCGAAGTCTCCCCAGTCTCTTCTCCTTCTCCAGGAAGTGGTTTCTCTTCTTCACTCGGTGTCACCATCTTCTCGAAAATCTGAGCCTGTTGTTTCACAGCGCTCGCCGCGGTTCCGAATCCTTCCTTCGCCGCTGAAGCGAGATCGCTCACTTCGGCAGTCACAGCTTCTCCCAAATCATTCAAATCTTTCTTGACGAGGTCGAGTGTTGTCATCGTCTGGAATTATTCGTACTGACAGATATCTTTTGAATTCTATTTTTGGCATTATTCAAAAAGTATCTACCAACCTTCTCTTTCGCTGAATTAAAGAAGGATGCTCCCCATGATGATCCTTGATTGAGCCACGAGCTGGCAACTCCGAAACCGCCGAATCCACTTTCATCGGTGGTCGCCGCCGCCGGTTTCTCCTCAATTTTTTCTACTGTTGATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>494 302 184 12 8</canonical_bands>
                <polymorphic_bands>506 302 184 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTTTCTTCGGCTTAATGAC</pcr_primer_p1>
		<pcr_primer_p2>AAACAACAGGCTCAGATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GTCTTTCTTCGGCTTAATGACCTCAGTGAAATCATCTTCACCGGTTGTAGTCTCTTCCATTGCCAAATTTTTAACAGTGTCCGTGACAGTATCCACGATTTTGCTCATCCACCCGAAGCTCAATGAGCTGGAGCTCTCCAACTTTGGCTTTGGTTTCTCCGAAGTCTCCCCAGTCTCTTCTCCTTCTCCAGGAAGTGGTTTCTCTTCTTCACTCGGTGTCACCATCTTCTCGAAAATCTGAGCCTGTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>GTCTTTCTTCGGCTTAATGACCTCAGTGAAATCATCTTCACCGGTTGTAGTCTCTTCCATTGCCAAATTTTTAACAGTGTCCGTGACAGYATCCACGATTTTGCTCATCCACCCGAAGCTCAATGAGCTGGAGCTCTCCAACTTTGGCTTTGGTTTCTCCGAAGTCTCCCCAGTCTCTTCTCCTTCTCCAGGAAGTGGTTTCTCTTCTTCACTCGGTGTCACCATCTTCTCGAAAATCTGAGCCTGTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11823</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>479284</contig_pos>
        <strand></strand>
        <context>GATGAGAAAT[T/G]ATTCTCGCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATGCTATAAAATTACTTTGTCGGACATTTGTGTTCGCCATGATGAGAAAT</left_flank>
        <right_flank>ATTCTCGCGAAGGAATTGGGCTGCTTCAGGAACATCGGGAAGGCTCGAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCCACGTGTCGTTGGCCTAGGAAGAGCTCTCGATTTGATACTAACTGGACGAGAAATCGAAGCAAAAGAGGCACTGGAATGGGGACTAGTAAATCGAATCGCAGAAGAAGGAAAAGTGATTGAAGAGGCAGTGAAGCTAGGAAAACTGATCGCTTCACACCCGGAAATGTGCATGTTAGCTGATAGAGAATCCACGTATTACTCTTTGGATCACACTGAAGAGGAGAGTTTTGCATATGAGTTTGAAAGCACAAAGGTTCTAGCAGAGAGTATCAAAGGAGCGCAAAAGTTTGTGGAACAGCAGAAGAATCGGAAATCAAAGTTATGAGATTATTTTTGTTGCATGAATGAAGATTTCTGAAAAATTTAATAATCTAGAAACACCGGTATCGGAAAACACAGGAGATAATTGAAATTCAAAAAGAGAAGGTGGAATTCAGGGAAAACATGCTATAAAATTACTTTGTCGGACATTTGTGTTCGCCATGATGAGAAATTATTCTCGCGAAGGAATTGGGCTGCTTCAGGAACATCGGGAAGGCTCGAAAGCATGTGACCTGAAAATATTTAGATAATCAAAATGTGTAGAAACATATGCAGATTCAAATAGCAGCAAAGAAGCCTTAAAAAGCGGAAAATTTGAGTTCTCGTCCTTTTCTGGAAACTTCCGGAAGGTTCTGGAGTTGCTTTTCCCGCTGAAACTGAAAACTTCGAAAAATAAACATACCGTAAAACCTCTAATAGAACGACACCCGGAACGTCCACTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAAGTGGTAACAAGTTAATGTTATCATATACAGCGGGGATCCTCTAGNNNNNNNNNNAACATTTTACTAGTTAGCCACTTTTTGATATCTTTCGCAGAAATGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTGTTAGAGGTTTTACGGTAACATTTGCGATTTTTCGAAAGCCAAATTGCTTTT</canonical>
            <polymorphic>TTGCCACGTGTCGTTGGCCTAGGAAGAGCTCTCGATTTGATACTAACTGGACGAGAAATCGAAGCAAAAGAGGCACTGGAATGGGGACTAGTAAATCGAATCGCAGAAGAAGGAAAAGTGATTGAAGAGGCAGTGAAGCTAGGAAAACTGATCGCTTCACACCCGGAAATGTGCATGTTAGCTGATAGAGAATCCACGTATTACTCTTTGGATCACACTGAAGAGGAGAGTTTTGCATATGAGTTTGAAAGCACAAAGGTTCTAGCAGAGAGTATCAAAGGAGCGCAAAAGTTTGTGGAACAGCAGAAGAATCGGAAATCAAAGTTATGAGATTATTTTTGTTGCATGAATGAAGATTTCTGAAAAATTTAATAATCTAGAAACACCGGTATCGGAAAACACAGGAGATAATTGAAATTCAAAAAGAGAAGGTGGAATTCAGGGAAAACATGCTATAAAATTACTTTGTCGGACATTTGTGTTCGCCATGATGAGAAATKATTCTCGCGAAGGAATTGGGCTGCTTCAGGAACATCGGGAAGGCTCGAAAGCATGTGACCTGAAAATATTTAGATAATCAAAATGTGTAGAAACATATGCAGATTCAAATAGCAGCAAAGAAGCCTTAAAAAGCGGAAAATTTGAGTTCTCGTCCTTTTCTGGAAACTTCCGGAAGGTTCTGGAGTTGCTTTTCCCGCTGAAACTGAAAACTTCGAAAAATAAACATACCGTAAAACCTCTAATAGAACGACACCCGGAACGTCCACTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAAGTGGTAACAAGTTAATGTTATCATATACAGCGGGGATCCTCTAGNNNNNNNNNNAACATTTTACTAGTTAGCCACTTTTTGATATCTTTCGCAGAAATGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTGTTAGAGGTTTTACGGTAACATTTGCGATTTTTCGAAAGCCAAATTGCTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>365 352 125 44 38 23 20 17 10 6</canonical_bands>
                <polymorphic_bands>365 352 125 55 44 23 20 10 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAACACAGGAGATAATTGAAA</pcr_primer_p1>
		<pcr_primer_p2>AAATTTTCCGCTTTTTAAGG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAAACACAGGAGATAATTGAAATTCAAAAAGAGAAGGTGGAATTCAGGGAAAACATGCTATAAAATTACTTTGTCGGACATTTGTGTTCGCCATGATGAGAAATTATTCTCGCGAAGGAATTGGGCTGCTTCAGGAACATCGGGAAGGCTCGAAAGCATGTGACCTGAAAATATTTAGATAATCAAAATGTGTAGAAACATATGCAGATTCAAATAGCAGCAAAGAAGCCTTAAAAAGCGGAAAATTT</canonical_amplicon>
		<polymorphic_amplicon>GAAAACACAGGAGATAATTGAAATTCAAAAAGAGAAGGTGGAATTCAGGGAAAACATGCTATAAAATTACTTTGTCGGACATTTGTGTTCGCCATGATGAGAAATKATTCTCGCGAAGGAATTGGGCTGCTTCAGGAACATCGGGAAGGCTCGAAAGCATGTGACCTGAAAATATTTAGATAATCAAAATGTGTAGAAACATATGCAGATTCAAATAGCAGCAAAGAAGCCTTAAAAAGCGGAAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11824</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>481298</contig_pos>
        <strand>+</strand>
        <context>GATCTTTTAG[A/G]AAATGGAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTAACTCGACTGCGTCTTTATTAAGAATAAACGAGTTGAGATCTTTTAG</left_flank>
        <right_flank>AAATGGAGAACCTTCGAATCGTTCCTGCATTCTTTCCTCTCATTATTTAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTGTCGCACTGAAAAAGATATATAATGGCATCATTTTAACTCAAACTATTGAAATTAAAGCTTACCGCTTTATACATTCTCATCAAATGAGTGTTCCTGAGTGCATGATAATTCTCTTCTGGAAATTGAATATCGATACTCAGGCCAGACGCGTATCTAATGATCAACAATGGAACTCGCATTCTCGGCAGCTCCACAACTTTTTCCACTGGTTCGCCGAGTTTTTCACTCTCTCGAGTGATCAGTTTTGCGAATACTGACATGAAGTTCCTGGAACAAAAATCAAACATTTGCAAGAAGCTTAATTGAAAATCTTACTGTTTGAAACTTGGGTTTTGATGGAAGTCTCTCAGAAATCGGAGTCGCGGAATTTCTCGTTTTGGGAAGAAAACAAAATCAAAGTCGGATTGTTTGTTGACGAAATTTGTGACCATGGAACCGACAGGAAGTAACTCGACTGCGTCTTTATTAAGAATAAACGAGTTGAGATCTTTTAGAAAATGGAGAACCTTCGAATCGTTCCTGCATTCTTTCCTCTCATTATTTAGTCCCTCTATCTGCTTATCCATTTTTAGAAGCTTGTCTGGCCATCTCTTCTTAATGTATTCAACATATGGAAGTGTTTCCAGTGGCTTTGGATCTAAAATAAGAACTTAATTTTCAGGTTAATAAATAAACTACTCACTTTCGCTTGAAGAAGACGGATGCGCAGCACATTCGGATGCCAAACACTGTTTTAACACTTGTGGAATTTTTCTACTGTGTAATTGCAACATAAATTGTGCTTTTAAACAAGAAAATCCTCCTTTTAACCGAAAAAAAATAAGGCGAAGAAAGCTCGTAAATCCACAGGCCGCAAACACCGTTTGCGTACAGTACGCTTTTCTGAGTTGCAGACCGTACTCTGCCCCTCCAAACCACTGGAAAGGCTCCGAATTAAATAAATCGAAATATTTTTATGATTATGTATGTCATAAACAAATCAGGAATAGAAGACA</canonical>
            <polymorphic>GATTGTCGCACTGAAAAAGATATATAATGGCATCATTTTAACTCAAACTATTGAAATTAAAGCTTACCGCTTTATACATTCTCATCAAATGAGTGTTCCTGAGTGCATGATAATTCTCTTCTGGAAATTGAATATCGATACTCAGGCCAGACGCGTATCTAATGATCAACAATGGAACTCGCATTCTCGGCAGCTCCACAACTTTTTCCACTGGTTCGCCGAGTTTTTCACTCTCTCGAGTGATCAGTTTTGCGAATACTGACATGAAGTTCCTGGAACAAAAATCAAACATTTGCAAGAAGCTTAATTGAAAATCTTACTGTTTGAAACTTGGGTTTTGATGGAAGTCTCTCAGAAATCGGAGTCGCGGAATTTCTCGTTTTGGGAAGAAAACAAAATCAAAGTCGGATTGTTTGTTGACGAAATTTGTGACCATGGAACCGACAGGAAGTAACTCGACTGCGTCTTTATTAAGAATAAACGAGTTGAGATCTTTTAGRAAATGGAGAACCTTCGAATCGTTCCTGCATTCTTTCCTCTCATTATTTAGTCCCTCTATCTGCTTATCCATTTTTAGAAGCTTGTCTGGCCATCTCTTCTTAATGTATTCAACATATGGAAGTGTTTCCAGTGGCTTTGGATCTAAAATAAGAACTTAATTTTCAGGTTAATAAATAAACTACTCACTTTCGCTTGAAGAAGACGGATGCGCAGCACATTCGGATGCCAAACACTGTTTTAACACTTGTGGAATTTTTCTACTGTGTAATTGCAACATAAATTGTGCTTTTAAACAAGAAAATCCTCCTTTTAACCGAAAAAAAATAAGGCGAAGAAAGCTCGTAAATCCACAGGCCGCAAACACCGTTTGCGTACAGTACGCTTTTCTGAGTTGCAGACCGTACTCTGCCCCTCCAAACCACTGGAAAGGCTCCGAATTAAATAAATCGAAATATTTTTATGATTATGTATGTCATAAACAAATCAGGAATAGAAGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGATGGAAGTCTCTCAGAAAT</pcr_primer_p1>
		<pcr_primer_p2>GACAAGCTTCTAAAAATGGATAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGATGGAAGTCTCTCAGAAATCGGAGTCGCGGAATTTCTCGTTTTGGGAAGAAAACAAAATCAAAGTCGGATTGTTTGTTGACGAAATTTGTGACCATGGAACCGACAGGAAGTAACTCGACTGCGTCTTTATTAAGAATAAACGAGTTGAGATCTTTTAGAAAATGGAGAACCTTCGAATCGTTCCTGCATTCTTTCCTCTCATTATTTAGTCCCTCTATCTGCTTATCCATTTTTAGAAGCTTGTC</canonical_amplicon>
		<polymorphic_amplicon>TTGATGGAAGTCTCTCAGAAATCGGAGTCGCGGAATTTCTCGTTTTGGGAAGAAAACAAAATCAAAGTCGGATTGTTTGTTGACGAAATTTGTGACCATGGAACCGACAGGAAGTAACTCGACTGCGTCTTTATTAAGAATAAACGAGTTGAGATCTTTTAGRAAATGGAGAACCTTCGAATCGTTCCTGCATTCTTTCCTCTCATTATTTAGTCCCTCTATCTGCTTATCCATTTTTAGAAGCTTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11825</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>480959</contig_pos>
        <strand>+</strand>
        <context>ACGCGTATCT[A/G]ATGATCAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATTCTCTTCTGGAAATTGAATATCGATACTCAGGCCAGACGCGTATCT</left_flank>
        <right_flank>ATGATCAACAATGGAACTCGCATTCTCGGCAGCTCCACAACTTTTTCCAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTGGCAGCATTGAAATGAGAATAATAGTCAACGAATCGAATGATCAGCTCGCTAACAGCCATCTTGTTATGTGACTTCCACGAGAAATCTTCTGGGCATGGATTCTCGGACCTGATGAGTTCGGCGATTTTTTTTATAGGAATTTCAGATGTGACGAGGGATGGATGGGTTTTCGCAAGCACTGGAAGCACTGGCCATGGCGAGAGGGCTTGTTCACTTTGCAAGAAGTGAATCACAAGGAGAAGGAGGTGATAGGAAGAGAGGAGGCCATACTTGCTATTTCGAACTTCCAACTTGTCGCAAACTGCTCGCAACCATAGGAACAGCAATGTGAAACGATTGTCGCACTGAAAAAGATATATAATGGCATCATTTTAACTCAAACTATTGAAATTAAAGCTTACCGCTTTATACATTCTCATCAAATGAGTGTTCCTGAGTGCATGATAATTCTCTTCTGGAAATTGAATATCGATACTCAGGCCAGACGCGTATCTAATGATCAACAATGGAACTCGCATTCTCGGCAGCTCCACAACTTTTTCCACTGGTTCGCCGAGTTTTTCACTCTCTCGAGTGATCAGTTTTGCGAATACTGACATGAAGTTCCTGGAACAAAAATCAAACATTTGCAAGAAGCTTAATTGAAAATCTTACTGTTTGAAACTTGGGTTTTGATGGAAGTCTCTCAGAAATCGGAGTCGCGGAATTTCTCGTTTTGGGAAGAAAACAAAATCAAAGTCGGATTGTTTGTTGACGAAATTTGTGACCATGGAACCGACAGGAAGTAACTCGACTGCGTCTTTATTAAGAATAAACGAGTTGAGATCTTTTAGAAAATGGAGAACCTTCGAATCGTTCCTGCATTCTTTCCTCTCATTATTTAGTCCCTCTATCTGCTTATCCATTTTTAGAAGCTTGTCTGGCCATCTCTTCTTAATGTATTCAACATATGGAAGTGTTTCCAGTGGCTTTGGATCTAAAATAAGAACTTAATT</canonical>
            <polymorphic>CTTTGGCAGCATTGAAATGAGAATAATAGTCAACGAATCGAATGATCAGCTCGCTAACAGCCATCTTGTTATGTGACTTCCACGAGAAATCTTCTGGGCATGGATTCTCGGACCTGATGAGTTCGGCGATTTTTTTTATAGGAATTTCAGATGTGACGAGGGATGGATGGGTTTTCGCAAGCACTGGAAGCACTGGCCATGGCGAGAGGGCTTGTTCACTTTGCAAGAAGTGAATCACAAGGAGAAGGAGGTGATAGGAAGAGAGGAGGCCATACTTGCTATTTCGAACTTCCAACTTGTCGCAAACTGCTCGCAACCATAGGAACAGCAATGTGAAACGATTGTCGCACTGAAAAAGATATATAATGGCATCATTTTAACTCAAACTATTGAAATTAAAGCTTACCGCTTTATACATTCTCATCAAATGAGTGTTCCTGAGTGCATGATAATTCTCTTCTGGAAATTGAATATCGATACTCAGGCCAGACGCGTATCTRATGATCAACAATGGAACTCGCATTCTCGGCAGCTCCACAACTTTTTCCACTGGTTCGCCGAGTTTTTCACTCTCTCGAGTGATCAGTTTTGCGAATACTGACATGAAGTTCCTGGAACAAAAATCAAACATTTGCAAGAAGCTTAATTGAAAATCTTACTGTTTGAAACTTGGGTTTTGATGGAAGTCTCTCAGAAATCGGAGTCGCGGAATTTCTCGTTTTGGGAAGAAAACAAAATCAAAGTCGGATTGTTTGTTGACGAAATTTGTGACCATGGAACCGACAGGAAGTAACTCGACTGCGTCTTTATTAAGAATAAACGAGTTGAGATCTTTTAGAAAATGGAGAACCTTCGAATCGTTCCTGCATTCTTTCCTCTCATTATTTAGTCCCTCTATCTGCTTATCCATTTTTAGAAGCTTGTCTGGCCATCTCTTCTTAATGTATTCAACATATGGAAGTGTTTCCAGTGGCTTTGGATCTAAAATAAGAACTTAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATAATTCTCTTCTGGAAATTG</pcr_primer_p1>
		<pcr_primer_p2>TCTGAGAGACTTCCATCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGATAATTCTCTTCTGGAAATTGAATATCGATACTCAGGCCAGACGCGTATCTAATGATCAACAATGGAACTCGCATTCTCGGCAGCTCCACAACTTTTTCCACTGGTTCGCCGAGTTTTTCACTCTCTCGAGTGATCAGTTTTGCGAATACTGACATGAAGTTCCTGGAACAAAAATCAAACATTTGCAAGAAGCTTAATTGAAAATCTTACTGTTTGAAACTTGGGTTTTGATGGAAGTCTCTCAGA</canonical_amplicon>
		<polymorphic_amplicon>TGATAATTCTCTTCTGGAAATTGAATATCGATACTCAGGCCAGACGCGTATCTRATGATCAACAATGGAACTCGCATTCTCGGCAGCTCCACAACTTTTTCCACTGGTTCGCCGAGTTTTTCACTCTCTCGAGTGATCAGTTTTGCGAATACTGACATGAAGTTCCTGGAACAAAAATCAAACATTTGCAAGAAGCTTAATTGAAAATCTTACTGTTTGAAACTTGGGTTTTGATGGAAGTCTCTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11826</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>560734</contig_pos>
        <strand>+</strand>
        <context>AAAAGAAAAC[A/G]ATCTAACGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGAATCATTAGGTATGTTTTTGTGTCGCGTTCAAGAACAAAAAGAAAAC</left_flank>
        <right_flank>ATCTAACGGATACTATTCAAACAGTGCGAAGGACTTATGACGATAGAGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGACAAAAGTGAGATGACAAGAGCAAAACACGCACAGTACAAACCTATAACTGGCCGGATTTCGAGATCTCATCCTCCATAAATAACCTACATGTAATTATGAACCCAACTGACTTGAAATATTTCAACGAACTATCCATAAATACTATACAAACTGGACTCTTTATATGGATAACCGGTTGAGTGAGAATTTCGATCCATGAATAGAACAAGAAGAAAAATGCAAAGCCCAACATTACAAACCGATACATTCCGAATAGCTTTCTAGCTTTTGTAAGGATTAGATAAATGAGTAGAGAGTTGGCTAATTGAGAACCAATAAAACCAAAGTATTGGATGACATGAAGGTAAAGCATTATGTCAAGAATGACACTTTTGTTTTTCCAGTTTTTGGGTTTTATAGCATCCAGCTGAGACTAGAGAAAGGAAATTTGGACTACATTCTAAAATGAATCATTAGGTATGTTTTTGTGTCGCGTTCAAGAACAAAAAGAAAACAATCTAACGGATACTATTCAAACAGTGCGAAGGACTTATGACGATAGAGAAGAGGTCCTGTGTTCTGATTGATCAGATGTGTGAAGTTTCAAAAATCGGATCGAAGTTTTGAATAGGGGTAATTAGTGGTATATTTTCAAGGAGAATAGAGATGTGTTAAAAATGGGCGAACATGAAAAAATAACTTTCTACAGATTCCGTTCATACGAGCCCCTTGAGGTGTTGATCTTGTGGGCTCATTGTTGGAGTTGCTGAGTTGCTACTAGCTGAGTTACTTAAAATAGGTATAAAATATTCCAAAAGTCGGTCCATTTCAAAGATATTGAAAAGTTGTACACCGTACCTTTGATCTTGGAACGATGCCGATAGAAGAGTATACCCTTGGAAACCTAGTATACTTTATACAGGATACAGTCTCATCACACCGAAACCTTGTCGGCTCTTTTTTTTTCAGAAGTATACTGTCTTTAGCACCGCCCATACAATTTTAGGACCATTCAT</canonical>
            <polymorphic>CCGACAAAAGTGAGATGACAAGAGCAAAACACGCACAGTACAAACCTATAACTGGCCGGATTTCGAGATCTCATCCTCCATAAATAACCTACATGTAATTATGAACCCAACTGACTTGAAATATTTCAACGAACTATCCATAAATACTATACAAACTGGACTCTTTATATGGATAACCGGTTGAGTGAGAATTTCGATCCATGAATAGAACAAGAAGAAAAATGCAAAGCCCAACATTACAAACCGATACATTCCGAATAGCTTTCTAGCTTTTGTAAGGATTAGATAAATGAGTAGAGAGTTGGCTAATTGAGAACCAATAAAACCAAAGTATTGGATGACATGAAGGTAAAGCATTATGTCAAGAATGACACTTTTGTTTTTCCAGTTTTTGGGTTTTATAGCATCCAGCTGAGACTAGAGAAAGGAAATTTGGACTACATTCTAAAATGAATCATTAGGTATGTTTTTGTGTCGCGTTCAAGAACAAAAAGAAAACRATCTAACGGATACTATTCAAACAGTGCGAAGGACTTATGACGATAGAGAAGAGGTCCTGTGTTCTGATTGATCAGATGTGTGAAGTTTCAAAAATCGGATCGAAGTTTTGAATAGGGGTAATTAGTGGTATATTTTCAAGGAGAATAGAGATGTGTTAAAAATGGGCGAACATGAAAAAATAACTTTCTACAGATTCCGTTCATACGAGCCCCTTGAGGTGTTGATCTTGTGGGCTCATTGTTGGAGTTGCTGAGTTGCTACTAGCTGAGTTACTTAAAATAGGTATAAAATATTCCAAAAGTCGGTCCATTTCAAAGATATTGAAAAGTTGTACACCGTACCTTTGATCTTGGAACGATGCCGATAGAAGAGTATACCCTTGGAAACCTAGTATACTTTATACAGGATACAGTCTCATCACACCGAAACCTTGTCGGCTCTTTTTTTTTCAGAAGTATACTGTCTTTAGCACCGCCCATACAATTTTAGGACCATTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAAAACCAAAGTATTGGATGA</pcr_primer_p1>
		<pcr_primer_p2>AGAACACAGGACCTCTTCTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATAAAACCAAAGTATTGGATGACATGAAGGTAAAGCATTATGTCAAGAATGACACTTTTGTTTTTCCAGTTTTTGGGTTTTATAGCATCCAGCTGAGACTAGAGAAAGGAAATTTGGACTACATTCTAAAATGAATCATTAGGTATGTTTTTGTGTCGCGTTCAAGAACAAAAAGAAAACAATCTAACGGATACTATTCAAACAGTGCGAAGGACTTATGACGATAGAGAAGAGGTCCTGTGTTCT</canonical_amplicon>
		<polymorphic_amplicon>AATAAAACCAAAGTATTGGATGACATGAAGGTAAAGCATTATGTCAAGAATGACACTTTTGTTTTTCCAGTTTTTGGGTTTTATAGCATCCAGCTGAGACTAGAGAAAGGAAATTTGGACTACATTCTAAAATGAATCATTAGGTATGTTTTTGTGTCGCGTTCAAGAACAAAAAGAAAACRATCTAACGGATACTATTCAAACAGTGCGAAGGACTTATGACGATAGAGAAGAGGTCCTGTGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11827</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>560908</contig_pos>
        <strand>+</strand>
        <context>GGGCGAACAT[A/G]AAAAAATAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTGGTATATTTTCAAGGAGAATAGAGATGTGTTAAAAATGGGCGAACAT</left_flank>
        <right_flank>AAAAAATAACTTTCTACAGATTCCGTTCATACGAGCCCCTTGAGGTGTTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCGGTTGAGTGAGAATTTCGATCCATGAATAGAACAAGAAGAAAAATGCAAAGCCCAACATTACAAACCGATACATTCCGAATAGCTTTCTAGCTTTTGTAAGGATTAGATAAATGAGTAGAGAGTTGGCTAATTGAGAACCAATAAAACCAAAGTATTGGATGACATGAAGGTAAAGCATTATGTCAAGAATGACACTTTTGTTTTTCCAGTTTTTGGGTTTTATAGCATCCAGCTGAGACTAGAGAAAGGAAATTTGGACTACATTCTAAAATGAATCATTAGGTATGTTTTTGTGTCGCGTTCAAGAACAAAAAGAAAACAATCTAACGGATACTATTCAAACAGTGCGAAGGACTTATGACGATAGAGAAGAGGTCCTGTGTTCTGATTGATCAGATGTGTGAAGTTTCAAAAATCGGATCGAAGTTTTGAATAGGGGTAATTAGTGGTATATTTTCAAGGAGAATAGAGATGTGTTAAAAATGGGCGAACATGAAAAAATAACTTTCTACAGATTCCGTTCATACGAGCCCCTTGAGGTGTTGATCTTGTGGGCTCATTGTTGGAGTTGCTGAGTTGCTACTAGCTGAGTTACTTAAAATAGGTATAAAATATTCCAAAAGTCGGTCCATTTCAAAGATATTGAAAAGTTGTACACCGTACCTTTGATCTTGGAACGATGCCGATAGAAGAGTATACCCTTGGAAACCTAGTATACTTTATACAGGATACAGTCTCATCACACCGAAACCTTGTCGGCTCTTTTTTTTTCAGAAGTATACTGTCTTTAGCACCGCCCATACAATTTTAGGACCATTCATTTCCATGCCTTTCCTCCTGCCATTCATTCATTCACTAAAATGAACCGTACTCTCTACTACGTCTCTTTTCTTCTGATCCTTGCCCAATATTGCTCATCAACTGGCGTTTTGGGGCTTCGGGTGTCTTCTTCGAAAGATGTCGTCGCTCGGATGGAACTACTCGATCGAGAGAAC</canonical>
            <polymorphic>AACCGGTTGAGTGAGAATTTCGATCCATGAATAGAACAAGAAGAAAAATGCAAAGCCCAACATTACAAACCGATACATTCCGAATAGCTTTCTAGCTTTTGTAAGGATTAGATAAATGAGTAGAGAGTTGGCTAATTGAGAACCAATAAAACCAAAGTATTGGATGACATGAAGGTAAAGCATTATGTCAAGAATGACACTTTTGTTTTTCCAGTTTTTGGGTTTTATAGCATCCAGCTGAGACTAGAGAAAGGAAATTTGGACTACATTCTAAAATGAATCATTAGGTATGTTTTTGTGTCGCGTTCAAGAACAAAAAGAAAACAATCTAACGGATACTATTCAAACAGTGCGAAGGACTTATGACGATAGAGAAGAGGTCCTGTGTTCTGATTGATCAGATGTGTGAAGTTTCAAAAATCGGATCGAAGTTTTGAATAGGGGTAATTAGTGGTATATTTTCAAGGAGAATAGAGATGTGTTAAAAATGGGCGAACATRAAAAAATAACTTTCTACAGATTCCGTTCATACGAGCCCCTTGAGGTGTTGATCTTGTGGGCTCATTGTTGGAGTTGCTGAGTTGCTACTAGCTGAGTTACTTAAAATAGGTATAAAATATTCCAAAAGTCGGTCCATTTCAAAGATATTGAAAAGTTGTACACCGTACCTTTGATCTTGGAACGATGCCGATAGAAGAGTATACCCTTGGAAACCTAGTATACTTTATACAGGATACAGTCTCATCACACCGAAACCTTGTCGGCTCTTTTTTTTTCAGAAGTATACTGTCTTTAGCACCGCCCATACAATTTTAGGACCATTCATTTCCATGCCTTTCCTCCTGCCATTCATTCATTCACTAAAATGAACCGTACTCTCTACTACGTCTCTTTTCTTCTGATCCTTGCCCAATATTGCTCATCAACTGGCGTTTTGGGGCTTCGGGTGTCTTCTTCGAAAGATGTCGTCGCTCGGATGGAACTACTCGATCGAGAGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>333 329 170 142 26</canonical_bands>
                <polymorphic_bands>662 170 142 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTGATCAGATGTGTGAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>GACCGACTTTTGGAATATTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GATTGATCAGATGTGTGAAGTTTCAAAAATCGGATCGAAGTTTTGAATAGGGGTAATTAGTGGTATATTTTCAAGGAGAATAGAGATGTGTTAAAAATGGGCGAACATGAAAAAATAACTTTCTACAGATTCCGTTCATACGAGCCCCTTGAGGTGTTGATCTTGTGGGCTCATTGTTGGAGTTGCTGAGTTGCTACTAGCTGAGTTACTTAAAATAGGTATAAAATATTCCAAAAGTCGGTC</canonical_amplicon>
		<polymorphic_amplicon>GATTGATCAGATGTGTGAAGTTTCAAAAATCGGATCGAAGTTTTGAATAGGGGTAATTAGTGGTATATTTTCAAGGAGAATAGAGATGTGTTAAAAATGGGCGAACATRAAAAAATAACTTTCTACAGATTCCGTTCATACGAGCCCCTTGAGGTGTTGATCTTGTGGGCTCATTGTTGGAGTTGCTGAGTTGCTACTAGCTGAGTTACTTAAAATAGGTATAAAATATTCCAAAAGTCGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11828</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>560960</contig_pos>
        <strand>+</strand>
        <context>GAGGTGTTGA[A/T]CTTGTGGGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAATAACTTTCTACAGATTCCGTTCATACGAGCCCCTTGAGGTGTTGA</left_flank>
        <right_flank>CTTGTGGGCTCATTGTTGGAGTTGCTGAGTTGCTACTAGCTGAGTTACTT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCCCAACATTACAAACCGATACATTCCGAATAGCTTTCTAGCTTTTGTAAGGATTAGATAAATGAGTAGAGAGTTGGCTAATTGAGAACCAATAAAACCAAAGTATTGGATGACATGAAGGTAAAGCATTATGTCAAGAATGACACTTTTGTTTTTCCAGTTTTTGGGTTTTATAGCATCCAGCTGAGACTAGAGAAAGGAAATTTGGACTACATTCTAAAATGAATCATTAGGTATGTTTTTGTGTCGCGTTCAAGAACAAAAAGAAAACAATCTAACGGATACTATTCAAACAGTGCGAAGGACTTATGACGATAGAGAAGAGGTCCTGTGTTCTGATTGATCAGATGTGTGAAGTTTCAAAAATCGGATCGAAGTTTTGAATAGGGGTAATTAGTGGTATATTTTCAAGGAGAATAGAGATGTGTTAAAAATGGGCGAACATGAAAAAATAACTTTCTACAGATTCCGTTCATACGAGCCCCTTGAGGTGTTGATCTTGTGGGCTCATTGTTGGAGTTGCTGAGTTGCTACTAGCTGAGTTACTTAAAATAGGTATAAAATATTCCAAAAGTCGGTCCATTTCAAAGATATTGAAAAGTTGTACACCGTACCTTTGATCTTGGAACGATGCCGATAGAAGAGTATACCCTTGGAAACCTAGTATACTTTATACAGGATACAGTCTCATCACACCGAAACCTTGTCGGCTCTTTTTTTTTCAGAAGTATACTGTCTTTAGCACCGCCCATACAATTTTAGGACCATTCATTTCCATGCCTTTCCTCCTGCCATTCATTCATTCACTAAAATGAACCGTACTCTCTACTACGTCTCTTTTCTTCTGATCCTTGCCCAATATTGCTCATCAACTGGCGTTTTGGGGCTTCGGGTGTCTTCTTCGAAAGATGTCGTCGCTCGGATGGAACTACTCGATCGAGAGAACTCTTCAAGATATGGAATATCGTTCGATCTTCATTTGGATCCAAAATACCATG</canonical>
            <polymorphic>AAGCCCAACATTACAAACCGATACATTCCGAATAGCTTTCTAGCTTTTGTAAGGATTAGATAAATGAGTAGAGAGTTGGCTAATTGAGAACCAATAAAACCAAAGTATTGGATGACATGAAGGTAAAGCATTATGTCAAGAATGACACTTTTGTTTTTCCAGTTTTTGGGTTTTATAGCATCCAGCTGAGACTAGAGAAAGGAAATTTGGACTACATTCTAAAATGAATCATTAGGTATGTTTTTGTGTCGCGTTCAAGAACAAAAAGAAAACAATCTAACGGATACTATTCAAACAGTGCGAAGGACTTATGACGATAGAGAAGAGGTCCTGTGTTCTGATTGATCAGATGTGTGAAGTTTCAAAAATCGGATCGAAGTTTTGAATAGGGGTAATTAGTGGTATATTTTCAAGGAGAATAGAGATGTGTTAAAAATGGGCGAACATGAAAAAATAACTTTCTACAGATTCCGTTCATACGAGCCCCTTGAGGTGTTGAWCTTGTGGGCTCATTGTTGGAGTTGCTGAGTTGCTACTAGCTGAGTTACTTAAAATAGGTATAAAATATTCCAAAAGTCGGTCCATTTCAAAGATATTGAAAAGTTGTACACCGTACCTTTGATCTTGGAACGATGCCGATAGAAGAGTATACCCTTGGAAACCTAGTATACTTTATACAGGATACAGTCTCATCACACCGAAACCTTGTCGGCTCTTTTTTTTTCAGAAGTATACTGTCTTTAGCACCGCCCATACAATTTTAGGACCATTCATTTCCATGCCTTTCCTCCTGCCATTCATTCATTCACTAAAATGAACCGTACTCTCTACTACGTCTCTTTTCTTCTGATCCTTGCCCAATATTGCTCATCAACTGGCGTTTTGGGGCTTCGGGTGTCTTCTTCGAAAGATGTCGTCGCTCGGATGGAACTACTCGATCGAGAGAACTCTTCAAGATATGGAATATCGTTCGATCTTCATTTGGATCCAAAATACCATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>343 228 126 123 88 36 28 16 12</canonical_bands>
                <polymorphic_bands>343 249 228 88 36 28 16 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTGATCAGATGTGTGAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>GACCGACTTTTGGAATATTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GATTGATCAGATGTGTGAAGTTTCAAAAATCGGATCGAAGTTTTGAATAGGGGTAATTAGTGGTATATTTTCAAGGAGAATAGAGATGTGTTAAAAATGGGCGAACATGAAAAAATAACTTTCTACAGATTCCGTTCATACGAGCCCCTTGAGGTGTTGATCTTGTGGGCTCATTGTTGGAGTTGCTGAGTTGCTACTAGCTGAGTTACTTAAAATAGGTATAAAATATTCCAAAAGTCGGTC</canonical_amplicon>
		<polymorphic_amplicon>GATTGATCAGATGTGTGAAGTTTCAAAAATCGGATCGAAGTTTTGAATAGGGGTAATTAGTGGTATATTTTCAAGGAGAATAGAGATGTGTTAAAAATGGGCGAACATGAAAAAATAACTTTCTACAGATTCCGTTCATACGAGCCCCTTGAGGTGTTGAWCTTGTGGGCTCATTGTTGGAGTTGCTGAGTTGCTACTAGCTGAGTTACTTAAAATAGGTATAAAATATTCCAAAAGTCGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11829</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>560982</contig_pos>
        <strand>+</strand>
        <context>ATTGTTGGAG[C/T]TGCTGAGTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTTCATACGAGCCCCTTGAGGTGTTGATCTTGTGGGCTCATTGTTGGAG</left_flank>
        <right_flank>TGCTGAGTTGCTACTAGCTGAGTTACTTAAAATAGGTATAAAATATTCCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATTCCGAATAGCTTTCTAGCTTTTGTAAGGATTAGATAAATGAGTAGAGAGTTGGCTAATTGAGAACCAATAAAACCAAAGTATTGGATGACATGAAGGTAAAGCATTATGTCAAGAATGACACTTTTGTTTTTCCAGTTTTTGGGTTTTATAGCATCCAGCTGAGACTAGAGAAAGGAAATTTGGACTACATTCTAAAATGAATCATTAGGTATGTTTTTGTGTCGCGTTCAAGAACAAAAAGAAAACAATCTAACGGATACTATTCAAACAGTGCGAAGGACTTATGACGATAGAGAAGAGGTCCTGTGTTCTGATTGATCAGATGTGTGAAGTTTCAAAAATCGGATCGAAGTTTTGAATAGGGGTAATTAGTGGTATATTTTCAAGGAGAATAGAGATGTGTTAAAAATGGGCGAACATGAAAAAATAACTTTCTACAGATTCCGTTCATACGAGCCCCTTGAGGTGTTGATCTTGTGGGCTCATTGTTGGAGTTGCTGAGTTGCTACTAGCTGAGTTACTTAAAATAGGTATAAAATATTCCAAAAGTCGGTCCATTTCAAAGATATTGAAAAGTTGTACACCGTACCTTTGATCTTGGAACGATGCCGATAGAAGAGTATACCCTTGGAAACCTAGTATACTTTATACAGGATACAGTCTCATCACACCGAAACCTTGTCGGCTCTTTTTTTTTCAGAAGTATACTGTCTTTAGCACCGCCCATACAATTTTAGGACCATTCATTTCCATGCCTTTCCTCCTGCCATTCATTCATTCACTAAAATGAACCGTACTCTCTACTACGTCTCTTTTCTTCTGATCCTTGCCCAATATTGCTCATCAACTGGCGTTTTGGGGCTTCGGGTGTCTTCTTCGAAAGATGTCGTCGCTCGGATGGAACTACTCGATCGAGAGAACTCTTCAAGATATGGAATATCGTTCGATCTTCATTTGGATCCAAAATACCATGAATTCGTGTTTCCATTTCCACC</canonical>
            <polymorphic>ACATTCCGAATAGCTTTCTAGCTTTTGTAAGGATTAGATAAATGAGTAGAGAGTTGGCTAATTGAGAACCAATAAAACCAAAGTATTGGATGACATGAAGGTAAAGCATTATGTCAAGAATGACACTTTTGTTTTTCCAGTTTTTGGGTTTTATAGCATCCAGCTGAGACTAGAGAAAGGAAATTTGGACTACATTCTAAAATGAATCATTAGGTATGTTTTTGTGTCGCGTTCAAGAACAAAAAGAAAACAATCTAACGGATACTATTCAAACAGTGCGAAGGACTTATGACGATAGAGAAGAGGTCCTGTGTTCTGATTGATCAGATGTGTGAAGTTTCAAAAATCGGATCGAAGTTTTGAATAGGGGTAATTAGTGGTATATTTTCAAGGAGAATAGAGATGTGTTAAAAATGGGCGAACATGAAAAAATAACTTTCTACAGATTCCGTTCATACGAGCCCCTTGAGGTGTTGATCTTGTGGGCTCATTGTTGGAGYTGCTGAGTTGCTACTAGCTGAGTTACTTAAAATAGGTATAAAATATTCCAAAAGTCGGTCCATTTCAAAGATATTGAAAAGTTGTACACCGTACCTTTGATCTTGGAACGATGCCGATAGAAGAGTATACCCTTGGAAACCTAGTATACTTTATACAGGATACAGTCTCATCACACCGAAACCTTGTCGGCTCTTTTTTTTTCAGAAGTATACTGTCTTTAGCACCGCCCATACAATTTTAGGACCATTCATTTCCATGCCTTTCCTCCTGCCATTCATTCATTCACTAAAATGAACCGTACTCTCTACTACGTCTCTTTTCTTCTGATCCTTGCCCAATATTGCTCATCAACTGGCGTTTTGGGGCTTCGGGTGTCTTCTTCGAAAGATGTCGTCGCTCGGATGGAACTACTCGATCGAGAGAACTCTTCAAGATATGGAATATCGTTCGATCTTCATTTGGATCCAAAATACCATGAATTCGTGTTTCCATTTCCACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTGATCAGATGTGTGAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>GACCGACTTTTGGAATATTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GATTGATCAGATGTGTGAAGTTTCAAAAATCGGATCGAAGTTTTGAATAGGGGTAATTAGTGGTATATTTTCAAGGAGAATAGAGATGTGTTAAAAATGGGCGAACATGAAAAAATAACTTTCTACAGATTCCGTTCATACGAGCCCCTTGAGGTGTTGATCTTGTGGGCTCATTGTTGGAGTTGCTGAGTTGCTACTAGCTGAGTTACTTAAAATAGGTATAAAATATTCCAAAAGTCGGTC</canonical_amplicon>
		<polymorphic_amplicon>GATTGATCAGATGTGTGAAGTTTCAAAAATCGGATCGAAGTTTTGAATAGGGGTAATTAGTGGTATATTTTCAAGGAGAATAGAGATGTGTTAAAAATGGGCGAACATGAAAAAATAACTTTCTACAGATTCCGTTCATACGAGCCCCTTGAGGTGTTGATCTTGTGGGCTCATTGTTGGAGYTGCTGAGTTGCTACTAGCTGAGTTACTTAAAATAGGTATAAAATATTCCAAAAGTCGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11832</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>563042</contig_pos>
        <strand>+</strand>
        <context>TTCCATAGAW[C/T]TTTTATTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATGGGTAAGATTTTGGTTTTGATTCTCTTATTCTGTCTTTTCCATAGAA</left_flank>
        <right_flank>TTTTATTCTTCCACTTATATTGAACTAAGATCAGATAAGAAGAATGGGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGATTTTAAGAATTCCTTGAAATGCTCTTTTGAGCAAGAAAAACGTAATGGGTTTATTCTGTGCTTGAAGTTTCGTTTACTGCGAAAAAGAAGAAGTGTTTCATATTCTAAGAAGATTCTACAAGTTTGGGCAGATGACGTTAGAAGGTCTTGTTTTTCGGGTACGTAAGATTAATCCTAAAGTCTAATACTTCTCCCTATTCTTTAAAGATTTTTTCCCTATTCTTTCAGACAATGAAGTTCTCTAAAACTTCCGGAAAACTATCATTTCGTTTTTTTTTGTATGCCAAAACATAGATCATTTCCAAGAAAGGTCTCAATATTTTGAATTTTTGCAAAAAAGAGGGACACACCGAATTCTCATTAAAAACTTCCCGAATCTTCTGTTTATTTACACCCTCCGGCTATTTAAATAAATACAGAGCCTCTTTTTCTAGACAACTCGAAGATGGGTAAGATTTTGGTTTTGATTCTCTTATTCTGTCTTTTCCATAGAATTTTTATTCTTCCACTTATATTGAACTAAGATCAGATAAGAAGAATGGGAAGACAATAACCAGGGTACGGCAGGTTTTGTTTTTTCTTTGGCAAGGGTAATCCTCAAGATTTCCCTTATTAAGAATTCTCGAAGAGAGTATTTTAGCATTTTTACATGCATCGGTAGATCGTGTTCTCTAACGGCTCATTGAACAGTTGACGCTTTTTTCTAGCCATGTAGTCCTTAATTACAATCGTTTACCTTTATCACTGACCATCTTCTCACCCAACAACTTCAACTCAAATTCCATTCTGACGTTTTGTTTTTTCTGAATTTCTTCAAAGCTTATTACTTCCATTTACCCAAATTTTCTCCTAAAGTTATCGAAAATATTTTTGGGTTTTTAACTAGGAGTGAGAAGCAGCTGGAGCAAAATAACACTGTTTCGATGTTGCGAATCTGAGGTGCTCAGAGGAAAATGATGTCATTTTTAAAATTTCAAATTAGTATATTTCTGTTT</canonical>
            <polymorphic>TCTGATTTTAAGAATTCCTTGAAATGCTCTTTTGAGCAAGAAAAACGTAATGGGTTTATTCTGTGCTTGAAGTTTCGTTTACTGCGAAAAAGAAGAAGTGTTTCATATTCTAAGAAGATTCTACAAGTTTGGGCAGATGACGTTAGAAGGTCTTGTTTTTCGGGTACGTAAGATTAATCCTAAAGTCTAATACTTCTCCCTATTCTTTAAAGATTTTTTCCCTATTCTTTCAGACAATGAAGTTCTCTAAAACTTCCGGAAAACTATCATTTCGTTTTTTTTTGTATGCCAAAACATAGATCATTTCCAAGAAAGGTCTCAATATTTTGAATTTTTGCAAAAAAGAGGGACACACCGAATTCTCATTAAAAACTTCCCGAATCTTCTGTTTATTTACACCCTCCGGCTATTTAAATAAATACAGAGCCTCTTTTTCTAGACAACTCGAAGATGGGTAAGATTTTGGTTTTGATTCTCTTATTCTGTCTTTTCCATAGAAYTTTTATTCTTCCACTTATATTGAACTAAGATCAGATAAGAAGAATGGGAAGACAATAACCAGGGTACGGCAGGTTTTGTTTTTTCTTTGGCAAGGGTAATCCTCAAGATTTCCCTTATTAAGAATTCTCGAAGAGAGTATTTTAGCATTTTTACATGCATCGGTAGATCGTGTTCTCTAACGGCTCATTGAACAGTTGACGCTTTTTTCTAGCCATGTAGTCCTTAATTACAATCGTTTACCTTTATCACTGACCATCTTCTCACCCAACAACTTCAACTCAAATTCCATTCTGACGTTTTGTTTTTTCTGAATTTCTTCAAAGCTTATTACTTCCATTTACCCAAATTTTCTCCTAAAGTTATCGAAAATATTTTTGGGTTTTTAACTAGGAGTGAGAAGCAGCTGGAGCAAAATAACACTGTTTCGATGTTGCGAATCTGAGGTGCTCAGAGGAAAATGATGTCATTTTTAAAATTTCAAATTAGTATATTTCTGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>317 160 140 129 125 34 29 28 26 12</canonical_bands>
                <polymorphic_bands>317 265 160 129 34 29 28 26 12</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>317 140 129 125 103 57 34 29 28 19 12 7</canonical_bands>
                <polymorphic_bands>317 265 129 103 57 34 29 28 19 12 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCCAAGAAAGGTCTCAATA</pcr_primer_p1>
		<pcr_primer_p2>GTCTTCCCATTCTTCTTATCTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTTCCAAGAAAGGTCTCAATATTTTGAATTTTTGCAAAAAAGAGGGACACACCGAATTCTCATTAAAAACTTCCCGAATCTTCTGTTTATTTACACCCTCCGGCTATTTAAATAAATACAGAGCCTCTTTTTCTAGACAACTCGAAGATGGGTAAGATTTTGGTTTTGATTCTCTTATTCTGTCTTTTCCATAGAATTTTTATTCTTCCACTTATATTGAACTAAGATCAGATAAGAAGAATGGGAAGAC</canonical_amplicon>
		<polymorphic_amplicon>ATTTCCAAGAAAGGTCTCAATATTTTGAATTTTTGCAAAAAAGAGGGACACACCGAATTCTCATTAAAAACTTCCCGAATCTTCTGTTTATTTACACCCTCCGGCTATTTAAATAAATACAGAGCCTCTTTTTCTAGACAACTCGAAGATGGGTAAGATTTTGGTTTTGATTCTCTTATTCTGTCTTTTCCATAGAAYTTTTATTCTTCCACTTATATTGAACTAAGATCAGATAAGAAGAATGGGAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11833</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>563041</contig_pos>
        <strand>+</strand>
        <context>TTTCCATAGA[A/T]YTTTTATTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGATGGGTAAGATTTTGGTTTTGATTCTCTTATTCTGTCTTTTCCATAGA</left_flank>
        <right_flank>TTTTTATTCTTCCACTTATATTGAACTAAGATCAGATAAGAAGAATGGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTGATTTTAAGAATTCCTTGAAATGCTCTTTTGAGCAAGAAAAACGTAATGGGTTTATTCTGTGCTTGAAGTTTCGTTTACTGCGAAAAAGAAGAAGTGTTTCATATTCTAAGAAGATTCTACAAGTTTGGGCAGATGACGTTAGAAGGTCTTGTTTTTCGGGTACGTAAGATTAATCCTAAAGTCTAATACTTCTCCCTATTCTTTAAAGATTTTTTCCCTATTCTTTCAGACAATGAAGTTCTCTAAAACTTCCGGAAAACTATCATTTCGTTTTTTTTTGTATGCCAAAACATAGATCATTTCCAAGAAAGGTCTCAATATTTTGAATTTTTGCAAAAAAGAGGGACACACCGAATTCTCATTAAAAACTTCCCGAATCTTCTGTTTATTTACACCCTCCGGCTATTTAAATAAATACAGAGCCTCTTTTTCTAGACAACTCGAAGATGGGTAAGATTTTGGTTTTGATTCTCTTATTCTGTCTTTTCCATAGAATTTTTATTCTTCCACTTATATTGAACTAAGATCAGATAAGAAGAATGGGAAGACAATAACCAGGGTACGGCAGGTTTTGTTTTTTCTTTGGCAAGGGTAATCCTCAAGATTTCCCTTATTAAGAATTCTCGAAGAGAGTATTTTAGCATTTTTACATGCATCGGTAGATCGTGTTCTCTAACGGCTCATTGAACAGTTGACGCTTTTTTCTAGCCATGTAGTCCTTAATTACAATCGTTTACCTTTATCACTGACCATCTTCTCACCCAACAACTTCAACTCAAATTCCATTCTGACGTTTTGTTTTTTCTGAATTTCTTCAAAGCTTATTACTTCCATTTACCCAAATTTTCTCCTAAAGTTATCGAAAATATTTTTGGGTTTTTAACTAGGAGTGAGAAGCAGCTGGAGCAAAATAACACTGTTTCGATGTTGCGAATCTGAGGTGCTCAGAGGAAAATGATGTCATTTTTAAAATTTCAAATTAGTATATTTCTGTT</canonical>
            <polymorphic>ATCTGATTTTAAGAATTCCTTGAAATGCTCTTTTGAGCAAGAAAAACGTAATGGGTTTATTCTGTGCTTGAAGTTTCGTTTACTGCGAAAAAGAAGAAGTGTTTCATATTCTAAGAAGATTCTACAAGTTTGGGCAGATGACGTTAGAAGGTCTTGTTTTTCGGGTACGTAAGATTAATCCTAAAGTCTAATACTTCTCCCTATTCTTTAAAGATTTTTTCCCTATTCTTTCAGACAATGAAGTTCTCTAAAACTTCCGGAAAACTATCATTTCGTTTTTTTTTGTATGCCAAAACATAGATCATTTCCAAGAAAGGTCTCAATATTTTGAATTTTTGCAAAAAAGAGGGACACACCGAATTCTCATTAAAAACTTCCCGAATCTTCTGTTTATTTACACCCTCCGGCTATTTAAATAAATACAGAGCCTCTTTTTCTAGACAACTCGAAGATGGGTAAGATTTTGGTTTTGATTCTCTTATTCTGTCTTTTCCATAGAWTTTTTATTCTTCCACTTATATTGAACTAAGATCAGATAAGAAGAATGGGAAGACAATAACCAGGGTACGGCAGGTTTTGTTTTTTCTTTGGCAAGGGTAATCCTCAAGATTTCCCTTATTAAGAATTCTCGAAGAGAGTATTTTAGCATTTTTACATGCATCGGTAGATCGTGTTCTCTAACGGCTCATTGAACAGTTGACGCTTTTTTCTAGCCATGTAGTCCTTAATTACAATCGTTTACCTTTATCACTGACCATCTTCTCACCCAACAACTTCAACTCAAATTCCATTCTGACGTTTTGTTTTTTCTGAATTTCTTCAAAGCTTATTACTTCCATTTACCCAAATTTTCTCCTAAAGTTATCGAAAATATTTTTGGGTTTTTAACTAGGAGTGAGAAGCAGCTGGAGCAAAATAACACTGTTTCGATGTTGCGAATCTGAGGTGCTCAGAGGAAAATGATGTCATTTTTAAAATTTCAAATTAGTATATTTCTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>317 160 140 129 125 34 29 28 25 13</canonical_bands>
                <polymorphic_bands>317 265 160 129 34 29 28 25 13</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>317 140 129 125 103 57 34 29 28 18 13 7</canonical_bands>
                <polymorphic_bands>317 265 129 103 57 34 29 28 18 13 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCCAAGAAAGGTCTCAATA</pcr_primer_p1>
		<pcr_primer_p2>GTCTTCCCATTCTTCTTATCTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTTCCAAGAAAGGTCTCAATATTTTGAATTTTTGCAAAAAAGAGGGACACACCGAATTCTCATTAAAAACTTCCCGAATCTTCTGTTTATTTACACCCTCCGGCTATTTAAATAAATACAGAGCCTCTTTTTCTAGACAACTCGAAGATGGGTAAGATTTTGGTTTTGATTCTCTTATTCTGTCTTTTCCATAGAATTTTTATTCTTCCACTTATATTGAACTAAGATCAGATAAGAAGAATGGGAAGAC</canonical_amplicon>
		<polymorphic_amplicon>ATTTCCAAGAAAGGTCTCAATATTTTGAATTTTTGCAAAAAAGAGGGACACACCGAATTCTCATTAAAAACTTCCCGAATCTTCTGTTTATTTACACCCTCCGGCTATTTAAATAAATACAGAGCCTCTTTTTCTAGACAACTCGAAGATGGGTAAGATTTTGGTTTTGATTCTCTTATTCTGTCTTTTCCATAGAWTTTTTATTCTTCCACTTATATTGAACTAAGATCAGATAAGAAGAATGGGAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11834</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>562824</contig_pos>
        <strand>+</strand>
        <context>TCGTTTTKTT[G/T]TGTATGCCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGACAATGAAGTTCTCTAAAACTTCCGGAAAACTATCATTTCGTTTTTTT</left_flank>
        <right_flank>TGTATGCCAAAACATAGATCATTTCCAAGAAAGGTCTCAATATTTTGAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTGCCGACCGAGCTGACCGACCATTTGCCGTGAAAAAATACTGCGTACGCAAACATTCTGCGACATGTTGACGCGCAAATGACGAATTCGGTCGGCTGTCGGTCGGCTGGGTTGGCGGTCGGCCGGCTGAGAACGAATGTAAGCCTTACAGCACGTAGATTATTACTAAAAATGTTGCTTTTCTGACCTCCAAATCTGAAATGTTTCGTGTCATAATCTGATTTTAAGAATTCCTTGAAATGCTCTTTTGAGCAAGAAAAACGTAATGGGTTTATTCTGTGCTTGAAGTTTCGTTTACTGCGAAAAAGAAGAAGTGTTTCATATTCTAAGAAGATTCTACAAGTTTGGGCAGATGACGTTAGAAGGTCTTGTTTTTCGGGTACGTAAGATTAATCCTAAAGTCTAATACTTCTCCCTATTCTTTAAAGATTTTTTCCCTATTCTTTCAGACAATGAAGTTCTCTAAAACTTCCGGAAAACTATCATTTCGTTTTTTTTTGTATGCCAAAACATAGATCATTTCCAAGAAAGGTCTCAATATTTTGAATTTTTGCAAAAAAGAGGGACACACCGAATTCTCATTAAAAACTTCCCGAATCTTCTGTTTATTTACACCCTCCGGCTATTTAAATAAATACAGAGCCTCTTTTTCTAGACAACTCGAAGATGGGTAAGATTTTGGTTTTGATTCTCTTATTCTGTCTTTTCCATAGAATTTTTATTCTTCCACTTATATTGAACTAAGATCAGATAAGAAGAATGGGAAGACAATAACCAGGGTACGGCAGGTTTTGTTTTTTCTTTGGCAAGGGTAATCCTCAAGATTTCCCTTATTAAGAATTCTCGAAGAGAGTATTTTAGCATTTTTACATGCATCGGTAGATCGTGTTCTCTAACGGCTCATTGAACAGTTGACGCTTTTTTCTAGCCATGTAGTCCTTAATTACAATCGTTTACCTTTATCACTGACCATCTTCTCACCCAACAACTTCAACTCA</canonical>
            <polymorphic>GACTGCCGACCGAGCTGACCGACCATTTGCCGTGAAAAAATACTGCGTACGCAAACATTCTGCGACATGTTGACGCGCAAATGACGAATTCGGTCGGCTGTCGGTCGGCTGGGTTGGCGGTCGGCCGGCTGAGAACGAATGTAAGCCTTACAGCACGTAGATTATTACTAAAAATGTTGCTTTTCTGACCTCCAAATCTGAAATGTTTCGTGTCATAATCTGATTTTAAGAATTCCTTGAAATGCTCTTTTGAGCAAGAAAAACGTAATGGGTTTATTCTGTGCTTGAAGTTTCGTTTACTGCGAAAAAGAAGAAGTGTTTCATATTCTAAGAAGATTCTACAAGTTTGGGCAGATGACGTTAGAAGGTCTTGTTTTTCGGGTACGTAAGATTAATCCTAAAGTCTAATACTTCTCCCTATTCTTTAAAGATTTTTTCCCTATTCTTTCAGACAATGAAGTTCTCTAAAACTTCCGGAAAACTATCATTTCGTTTTTTTKTGTATGCCAAAACATAGATCATTTCCAAGAAAGGTCTCAATATTTTGAATTTTTGCAAAAAAGAGGGACACACCGAATTCTCATTAAAAACTTCCCGAATCTTCTGTTTATTTACACCCTCCGGCTATTTAAATAAATACAGAGCCTCTTTTTCTAGACAACTCGAAGATGGGTAAGATTTTGGTTTTGATTCTCTTATTCTGTCTTTTCCATAGAATTTTTATTCTTCCACTTATATTGAACTAAGATCAGATAAGAAGAATGGGAAGACAATAACCAGGGTACGGCAGGTTTTGTTTTTTCTTTGGCAAGGGTAATCCTCAAGATTTCCCTTATTAAGAATTCTCGAAGAGAGTATTTTAGCATTTTTACATGCATCGGTAGATCGTGTTCTCTAACGGCTCATTGAACAGTTGACGCTTTTTTCTAGCCATGTAGTCCTTAATTACAATCGTTTACCTTTATCACTGACCATCTTCTCACCCAACAACTTCAACTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTTCAGACAATGAAGTTCTC</pcr_primer_p1>
		<pcr_primer_p2>AGAATCAAAACCAAAATCTTACC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTCTTTCAGACAATGAAGTTCTCTAAAACTTCCGGAAAACTATCATTTCGTTTTTTTTTGTATGCCAAAACATAGATCATTTCCAAGAAAGGTCTCAATATTTTGAATTTTTGCAAAAAAGAGGGACACACCGAATTCTCATTAAAAACTTCCCGAATCTTCTGTTTATTTACACCCTCCGGCTATTTAAATAAATACAGAGCCTCTTTTTCTAGACAACTCGAAGATGGGTAAGATTTTGGTTTTGATTCT</canonical_amplicon>
		<polymorphic_amplicon>TTCTTTCAGACAATGAAGTTCTCTAAAACTTCCGGAAAACTATCATTTCGTTTTTTTKTGTATGCCAAAACATAGATCATTTCCAAGAAAGGTCTCAATATTTTGAATTTTTGCAAAAAAGAGGGACACACCGAATTCTCATTAAAAACTTCCCGAATCTTCTGTTTATTTACACCCTCCGGCTATTTAAATAAATACAGAGCCTCTTTTTCTAGACAACTCGAAGATGGGTAAGATTTTGGTTTTGATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11835</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>562821</contig_pos>
        <strand>+</strand>
        <context>ATTTCGTTTT[G/T]TTKTGTATGC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCAGACAATGAAGTTCTCTAAAACTTCCGGAAAACTATCATTTCGTTTT</left_flank>
        <right_flank>TTTTGTATGCCAAAACATAGATCATTTCCAAGAAAGGTCTCAATATTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCGACTGCCGACCGAGCTGACCGACCATTTGCCGTGAAAAAATACTGCGTACGCAAACATTCTGCGACATGTTGACGCGCAAATGACGAATTCGGTCGGCTGTCGGTCGGCTGGGTTGGCGGTCGGCCGGCTGAGAACGAATGTAAGCCTTACAGCACGTAGATTATTACTAAAAATGTTGCTTTTCTGACCTCCAAATCTGAAATGTTTCGTGTCATAATCTGATTTTAAGAATTCCTTGAAATGCTCTTTTGAGCAAGAAAAACGTAATGGGTTTATTCTGTGCTTGAAGTTTCGTTTACTGCGAAAAAGAAGAAGTGTTTCATATTCTAAGAAGATTCTACAAGTTTGGGCAGATGACGTTAGAAGGTCTTGTTTTTCGGGTACGTAAGATTAATCCTAAAGTCTAATACTTCTCCCTATTCTTTAAAGATTTTTTCCCTATTCTTTCAGACAATGAAGTTCTCTAAAACTTCCGGAAAACTATCATTTCGTTTTTTTTTGTATGCCAAAACATAGATCATTTCCAAGAAAGGTCTCAATATTTTGAATTTTTGCAAAAAAGAGGGACACACCGAATTCTCATTAAAAACTTCCCGAATCTTCTGTTTATTTACACCCTCCGGCTATTTAAATAAATACAGAGCCTCTTTTTCTAGACAACTCGAAGATGGGTAAGATTTTGGTTTTGATTCTCTTATTCTGTCTTTTCCATAGAATTTTTATTCTTCCACTTATATTGAACTAAGATCAGATAAGAAGAATGGGAAGACAATAACCAGGGTACGGCAGGTTTTGTTTTTTCTTTGGCAAGGGTAATCCTCAAGATTTCCCTTATTAAGAATTCTCGAAGAGAGTATTTTAGCATTTTTACATGCATCGGTAGATCGTGTTCTCTAACGGCTCATTGAACAGTTGACGCTTTTTTCTAGCCATGTAGTCCTTAATTACAATCGTTTACCTTTATCACTGACCATCTTCTCACCCAACAACTTCAAC</canonical>
            <polymorphic>ACCGACTGCCGACCGAGCTGACCGACCATTTGCCGTGAAAAAATACTGCGTACGCAAACATTCTGCGACATGTTGACGCGCAAATGACGAATTCGGTCGGCTGTCGGTCGGCTGGGTTGGCGGTCGGCCGGCTGAGAACGAATGTAAGCCTTACAGCACGTAGATTATTACTAAAAATGTTGCTTTTCTGACCTCCAAATCTGAAATGTTTCGTGTCATAATCTGATTTTAAGAATTCCTTGAAATGCTCTTTTGAGCAAGAAAAACGTAATGGGTTTATTCTGTGCTTGAAGTTTCGTTTACTGCGAAAAAGAAGAAGTGTTTCATATTCTAAGAAGATTCTACAAGTTTGGGCAGATGACGTTAGAAGGTCTTGTTTTTCGGGTACGTAAGATTAATCCTAAAGTCTAATACTTCTCCCTATTCTTTAAAGATTTTTTCCCTATTCTTTCAGACAATGAAGTTCTCTAAAACTTCCGGAAAACTATCATTTCGTTTTKTTTTGTATGCCAAAACATAGATCATTTCCAAGAAAGGTCTCAATATTTTGAATTTTTGCAAAAAAGAGGGACACACCGAATTCTCATTAAAAACTTCCCGAATCTTCTGTTTATTTACACCCTCCGGCTATTTAAATAAATACAGAGCCTCTTTTTCTAGACAACTCGAAGATGGGTAAGATTTTGGTTTTGATTCTCTTATTCTGTCTTTTCCATAGAATTTTTATTCTTCCACTTATATTGAACTAAGATCAGATAAGAAGAATGGGAAGACAATAACCAGGGTACGGCAGGTTTTGTTTTTTCTTTGGCAAGGGTAATCCTCAAGATTTCCCTTATTAAGAATTCTCGAAGAGAGTATTTTAGCATTTTTACATGCATCGGTAGATCGTGTTCTCTAACGGCTCATTGAACAGTTGACGCTTTTTTCTAGCCATGTAGTCCTTAATTACAATCGTTTACCTTTATCACTGACCATCTTCTCACCCAACAACTTCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTTCAGACAATGAAGTTCTC</pcr_primer_p1>
		<pcr_primer_p2>AGAATCAAAACCAAAATCTTACC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTCTTTCAGACAATGAAGTTCTCTAAAACTTCCGGAAAACTATCATTTCGTTTTTTTTTGTATGCCAAAACATAGATCATTTCCAAGAAAGGTCTCAATATTTTGAATTTTTGCAAAAAAGAGGGACACACCGAATTCTCATTAAAAACTTCCCGAATCTTCTGTTTATTTACACCCTCCGGCTATTTAAATAAATACAGAGCCTCTTTTTCTAGACAACTCGAAGATGGGTAAGATTTTGGTTTTGATTCT</canonical_amplicon>
		<polymorphic_amplicon>TTCTTTCAGACAATGAAGTTCTCTAAAACTTCCGGAAAACTATCATTTCGTTTTKTTTTGTATGCCAAAACATAGATCATTTCCAAGAAAGGTCTCAATATTTTGAATTTTTGCAAAAAAGAGGGACACACCGAATTCTCATTAAAAACTTCCCGAATCTTCTGTTTATTTACACCCTCCGGCTATTTAAATAAATACAGAGCCTCTTTTTCTAGACAACTCGAAGATGGGTAAGATTTTGGTTTTGATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11836</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>631049</contig_pos>
        <strand>+</strand>
        <context>CAGAGGAGTT[G/T]GCWGGTGTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTT</left_flank>
        <right_flank>GCTGGTGTGGAGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAAAATAATTTCGAACATACATGCTCCTTTAAATGTGCCTTTGAGGATTTCCCTAAGCTCCGCCCACTCGAAGTTTCTAGAGCTATGCGAATTAAAATTAGACCAATGTGATGCGGAAAACAAAATTTTTTTTTTCGGGTTACTGTAGTTGTCGTTGTCGGACCTTTTATCTTTCGATGAGTTTTATCGATTTTTCAATGATTTTCAAGATTTTTTGCGCTTTTTTTTAATGGAAAAAAAATAGCTCAACATTGATGAAATTCGTCGAAAAATCCAGAATAACACCAATATTTCTTCTAGATTCTGAATCGCGTAAAATGGGTGTACGATGTGCCCGATGTGACTTGCGATCAAAAACAGAGCATCTATCAGTACCACGCAGGACTCAATGCGTCGTGTTGGGTGGAGGAGCAAAAGAGATTGGAGAGTTTGAACGCCACTCTTCTGGATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTGGCTGGTGTGGAGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAACCGAAAAAAAAACACATGCTGACTTTTGATTGACTTTTGACATGAAATACAAATATTTTTGTACACAATACAGGGAAAATGACAAAAAATTATCCCTAGATTTGCTCCTTCTGCTTCCGACTCTCCTCGTAACATGCCACTTTCATACACATCATTTCCTTGTGCTCGGCGATGCACTGAAAAAATATTTTTAGAATTTTAGAAAGATCTTAATGTGAAGAATAAAGTGCCTAACTTTCTCAACATGATTTTCCTAGGCCACCATAGTTAATGATCCAGACATGGTCTAACCTAAACTTGATGTGTTTTCTAGGTAACTTAATATGATGACCTAACTTTTTCAAGTTGAGGTTT</canonical>
            <polymorphic>TAAAAAATAATTTCGAACATACATGCTCCTTTAAATGTGCCTTTGAGGATTTCCCTAAGCTCCGCCCACTCGAAGTTTCTAGAGCTATGCGAATTAAAATTAGACCAATGTGATGCGGAAAACAAAATTTTTTTTTTCGGGTTACTGTAGTTGTCGTTGTCGGACCTTTTATCTTTCGATGAGTTTTATCGATTTTTCAATGATTTTCAAGATTTTTTGCGCTTTTTTTTAATGGAAAAAAAATAGCTCAACATTGATGAAATTCGTCGAAAAATCCAGAATAACACCAATATTTCTTCTAGATTCTGAATCGCGTAAAATGGGTGTACGATGTGCCCGATGTGACTTGCGATCAAAAACAGAGCATCTATCAGTACCACGCAGGACTCAATGCGTCGTGTTGGGTGGAGGAGCAAAAGAGATTGGAGAGTTTGAACGCCACTCTTCTGGATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTKGCTGGTGTGGAGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAACCGAAAAAAAAACACATGCTGACTTTTGATTGACTTTTGACATGAAATACAAATATTTTTGTACACAATACAGGGAAAATGACAAAAAATTATCCCTAGATTTGCTCCTTCTGCTTCCGACTCTCCTCGTAACATGCCACTTTCATACACATCATTTCCTTGTGCTCGGCGATGCACTGAAAAAATATTTTTAGAATTTTAGAAAGATCTTAATGTGAAGAATAAAGTGCCTAACTTTCTCAACATGATTTTCCTAGGCCACCATAGTTAATGATCCAGACATGGTCTAACCTAAACTTGATGTGTTTTCTAGGTAACTTAATATGATGACCTAACTTTTTCAAGTTGAGGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>403 255 162 96 59 25</canonical_bands>
                <polymorphic_bands>658 162 96 59 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAAAATGGGTGTACGATGTG</pcr_primer_p1>
		<pcr_primer_p2>TTATTCAATTCTTGTTCCTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GTAAAATGGGTGTACGATGTGCCCGATGTGACTTGCGATCAAAAACAGAGCATCTATCAGTACCACGCAGGACTCAATGCGTCGTGTTGGGTGGAGGAGCAAAAGAGATTGGAGAGTTTGAACGCCACTCTTCTGGATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTGGCTGGTGTGGAGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAA</canonical_amplicon>
		<polymorphic_amplicon>GTAAAATGGGTGTACGATGTGCCCGATGTGACTTGCGATCAAAAACAGAGCATCTATCAGTACCACGCAGGACTCAATGCGTCGTGTTGGGTGGAGGAGCAAAAGAGATTGGAGAGTTTGAACGCCACTCTTCTGGATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTKGCTGGTGTGGAGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11837</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>631052</contig_pos>
        <strand>+</strand>
        <context>AGGAGTTKGC[A/T]GGTGTGGAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTGGC</left_flank>
        <right_flank>GGTGTGGAGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATAATTTCGAACATACATGCTCCTTTAAATGTGCCTTTGAGGATTTCCCTAAGCTCCGCCCACTCGAAGTTTCTAGAGCTATGCGAATTAAAATTAGACCAATGTGATGCGGAAAACAAAATTTTTTTTTTCGGGTTACTGTAGTTGTCGTTGTCGGACCTTTTATCTTTCGATGAGTTTTATCGATTTTTCAATGATTTTCAAGATTTTTTGCGCTTTTTTTTAATGGAAAAAAAATAGCTCAACATTGATGAAATTCGTCGAAAAATCCAGAATAACACCAATATTTCTTCTAGATTCTGAATCGCGTAAAATGGGTGTACGATGTGCCCGATGTGACTTGCGATCAAAAACAGAGCATCTATCAGTACCACGCAGGACTCAATGCGTCGTGTTGGGTGGAGGAGCAAAAGAGATTGGAGAGTTTGAACGCCACTCTTCTGGATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTGGCTGGTGTGGAGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAACCGAAAAAAAAACACATGCTGACTTTTGATTGACTTTTGACATGAAATACAAATATTTTTGTACACAATACAGGGAAAATGACAAAAAATTATCCCTAGATTTGCTCCTTCTGCTTCCGACTCTCCTCGTAACATGCCACTTTCATACACATCATTTCCTTGTGCTCGGCGATGCACTGAAAAAATATTTTTAGAATTTTAGAAAGATCTTAATGTGAAGAATAAAGTGCCTAACTTTCTCAACATGATTTTCCTAGGCCACCATAGTTAATGATCCAGACATGGTCTAACCTAAACTTGATGTGTTTTCTAGGTAACTTAATATGATGACCTAACTTTTTCAAGTTGAGGTTTTGT</canonical>
            <polymorphic>AAAATAATTTCGAACATACATGCTCCTTTAAATGTGCCTTTGAGGATTTCCCTAAGCTCCGCCCACTCGAAGTTTCTAGAGCTATGCGAATTAAAATTAGACCAATGTGATGCGGAAAACAAAATTTTTTTTTTCGGGTTACTGTAGTTGTCGTTGTCGGACCTTTTATCTTTCGATGAGTTTTATCGATTTTTCAATGATTTTCAAGATTTTTTGCGCTTTTTTTTAATGGAAAAAAAATAGCTCAACATTGATGAAATTCGTCGAAAAATCCAGAATAACACCAATATTTCTTCTAGATTCTGAATCGCGTAAAATGGGTGTACGATGTGCCCGATGTGACTTGCGATCAAAAACAGAGCATCTATCAGTACCACGCAGGACTCAATGCGTCGTGTTGGGTGGAGGAGCAAAAGAGATTGGAGAGTTTGAACGCCACTCTTCTGGATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTGGCWGGTGTGGAGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAACCGAAAAAAAAACACATGCTGACTTTTGATTGACTTTTGACATGAAATACAAATATTTTTGTACACAATACAGGGAAAATGACAAAAAATTATCCCTAGATTTGCTCCTTCTGCTTCCGACTCTCCTCGTAACATGCCACTTTCATACACATCATTTCCTTGTGCTCGGCGATGCACTGAAAAAATATTTTTAGAATTTTAGAAAGATCTTAATGTGAAGAATAAAGTGCCTAACTTTCTCAACATGATTTTCCTAGGCCACCATAGTTAATGATCCAGACATGGTCTAACCTAAACTTGATGTGTTTTCTAGGTAACTTAATATGATGACCTAACTTTTTCAAGTTGAGGTTTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>403 255 162 99 56 25</canonical_bands>
                <polymorphic_bands>658 162 99 56 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAAAATGGGTGTACGATGTG</pcr_primer_p1>
		<pcr_primer_p2>CTTTATTATTCAATTCTTGTTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTAAAATGGGTGTACGATGTGCCCGATGTGACTTGCGATCAAAAACAGAGCATCTATCAGTACCACGCAGGACTCAATGCGTCGTGTTGGGTGGAGGAGCAAAAGAGATTGGAGAGTTTGAACGCCACTCTTCTGGATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTGGCTGGTGTGGAGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAATAAAG</canonical_amplicon>
		<polymorphic_amplicon>GTAAAATGGGTGTACGATGTGCCCGATGTGACTTGCGATCAAAAACAGAGCATCTATCAGTACCACGCAGGACTCAATGCGTCGTGTTGGGTGGAGGAGCAAAAGAGATTGGAGAGTTTGAACGCCACTCTTCTGGATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTGGCWGGTGTGGAGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAATAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11838</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>631076</contig_pos>
        <strand>+</strand>
        <context>CTACAGAGAG[C/T]GATAATGAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGTTGTTCACCGCAGAGGAGTTGGCTGGTGTGGAGGCAACTACAGAGAG</left_flank>
        <right_flank>GATAATGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAAAATCTCAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTTAAATGTGCCTTTGAGGATTTCCCTAAGCTCCGCCCACTCGAAGTTTCTAGAGCTATGCGAATTAAAATTAGACCAATGTGATGCGGAAAACAAAATTTTTTTTTTCGGGTTACTGTAGTTGTCGTTGTCGGACCTTTTATCTTTCGATGAGTTTTATCGATTTTTCAATGATTTTCAAGATTTTTTGCGCTTTTTTTTAATGGAAAAAAAATAGCTCAACATTGATGAAATTCGTCGAAAAATCCAGAATAACACCAATATTTCTTCTAGATTCTGAATCGCGTAAAATGGGTGTACGATGTGCCCGATGTGACTTGCGATCAAAAACAGAGCATCTATCAGTACCACGCAGGACTCAATGCGTCGTGTTGGGTGGAGGAGCAAAAGAGATTGGAGAGTTTGAACGCCACTCTTCTGGATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTGGCTGGTGTGGAGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAACCGAAAAAAAAACACATGCTGACTTTTGATTGACTTTTGACATGAAATACAAATATTTTTGTACACAATACAGGGAAAATGACAAAAAATTATCCCTAGATTTGCTCCTTCTGCTTCCGACTCTCCTCGTAACATGCCACTTTCATACACATCATTTCCTTGTGCTCGGCGATGCACTGAAAAAATATTTTTAGAATTTTAGAAAGATCTTAATGTGAAGAATAAAGTGCCTAACTTTCTCAACATGATTTTCCTAGGCCACCATAGTTAATGATCCAGACATGGTCTAACCTAAACTTGATGTGTTTTCTAGGTAACTTAATATGATGACCTAACTTTTTCAAGTTGAGGTTTTGTAGGCCACCAGTTTTTATGGCTTAG</canonical>
            <polymorphic>CCTTTAAATGTGCCTTTGAGGATTTCCCTAAGCTCCGCCCACTCGAAGTTTCTAGAGCTATGCGAATTAAAATTAGACCAATGTGATGCGGAAAACAAAATTTTTTTTTTCGGGTTACTGTAGTTGTCGTTGTCGGACCTTTTATCTTTCGATGAGTTTTATCGATTTTTCAATGATTTTCAAGATTTTTTGCGCTTTTTTTTAATGGAAAAAAAATAGCTCAACATTGATGAAATTCGTCGAAAAATCCAGAATAACACCAATATTTCTTCTAGATTCTGAATCGCGTAAAATGGGTGTACGATGTGCCCGATGTGACTTGCGATCAAAAACAGAGCATCTATCAGTACCACGCAGGACTCAATGCGTCGTGTTGGGTGGAGGAGCAAAAGAGATTGGAGAGTTTGAACGCCACTCTTCTGGATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTGGCTGGTGTGGAGGCAACTACAGAGAGYGATAATGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAACCGAAAAAAAAACACATGCTGACTTTTGATTGACTTTTGACATGAAATACAAATATTTTTGTACACAATACAGGGAAAATGACAAAAAATTATCCCTAGATTTGCTCCTTCTGCTTCCGACTCTCCTCGTAACATGCCACTTTCATACACATCATTTCCTTGTGCTCGGCGATGCACTGAAAAAATATTTTTAGAATTTTAGAAAGATCTTAATGTGAAGAATAAAGTGCCTAACTTTCTCAACATGATTTTCCTAGGCCACCATAGTTAATGATCCAGACATGGTCTAACCTAAACTTGATGTGTTTTCTAGGTAACTTAATATGATGACCTAACTTTTTCAAGTTGAGGTTTTGTAGGCCACCAGTTTTTATGGCTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCAAAAGAGATTGGAGAGT</pcr_primer_p1>
		<pcr_primer_p2>GTTTTCCTCTCTTTTTCAATGTC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GAGCAAAAGAGATTGGAGAGTTTGAACGCCACTCTTCTGGATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTGGCTGGTGTGGAGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAAC</canonical_amplicon>
		<polymorphic_amplicon>GAGCAAAAGAGATTGGAGAGTTTGAACGCCACTCTTCTGGATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTGGCTGGTGTGGAGGCAACTACAGAGAGYGATAATGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11839</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>631110</contig_pos>
        <strand>+</strand>
        <context>AATAATAAAG[C/G]WTTTAAAYAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAATAAAG</left_flank>
        <right_flank>TTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGCCCACTCGAAGTTTCTAGAGCTATGCGAATTAAAATTAGACCAATGTGATGCGGAAAACAAAATTTTTTTTTTCGGGTTACTGTAGTTGTCGTTGTCGGACCTTTTATCTTTCGATGAGTTTTATCGATTTTTCAATGATTTTCAAGATTTTTTGCGCTTTTTTTTAATGGAAAAAAAATAGCTCAACATTGATGAAATTCGTCGAAAAATCCAGAATAACACCAATATTTCTTCTAGATTCTGAATCGCGTAAAATGGGTGTACGATGTGCCCGATGTGACTTGCGATCAAAAACAGAGCATCTATCAGTACCACGCAGGACTCAATGCGTCGTGTTGGGTGGAGGAGCAAAAGAGATTGGAGAGTTTGAACGCCACTCTTCTGGATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTGGCTGGTGTGGAGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAACCGAAAAAAAAACACATGCTGACTTTTGATTGACTTTTGACATGAAATACAAATATTTTTGTACACAATACAGGGAAAATGACAAAAAATTATCCCTAGATTTGCTCCTTCTGCTTCCGACTCTCCTCGTAACATGCCACTTTCATACACATCATTTCCTTGTGCTCGGCGATGCACTGAAAAAATATTTTTAGAATTTTAGAAAGATCTTAATGTGAAGAATAAAGTGCCTAACTTTCTCAACATGATTTTCCTAGGCCACCATAGTTAATGATCCAGACATGGTCTAACCTAAACTTGATGTGTTTTCTAGGTAACTTAATATGATGACCTAACTTTTTCAAGTTGAGGTTTTGTAGGCCACCAGTTTTTATGGCTTAGAAAAAACAGTAGGTGAATATCAGGAAACCCACCA</canonical>
            <polymorphic>CCGCCCACTCGAAGTTTCTAGAGCTATGCGAATTAAAATTAGACCAATGTGATGCGGAAAACAAAATTTTTTTTTTCGGGTTACTGTAGTTGTCGTTGTCGGACCTTTTATCTTTCGATGAGTTTTATCGATTTTTCAATGATTTTCAAGATTTTTTGCGCTTTTTTTTAATGGAAAAAAAATAGCTCAACATTGATGAAATTCGTCGAAAAATCCAGAATAACACCAATATTTCTTCTAGATTCTGAATCGCGTAAAATGGGTGTACGATGTGCCCGATGTGACTTGCGATCAAAAACAGAGCATCTATCAGTACCACGCAGGACTCAATGCGTCGTGTTGGGTGGAGGAGCAAAAGAGATTGGAGAGTTTGAACGCCACTCTTCTGGATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTGGCTGGTGTGGAGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAATAAAGSTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAACCGAAAAAAAAACACATGCTGACTTTTGATTGACTTTTGACATGAAATACAAATATTTTTGTACACAATACAGGGAAAATGACAAAAAATTATCCCTAGATTTGCTCCTTCTGCTTCCGACTCTCCTCGTAACATGCCACTTTCATACACATCATTTCCTTGTGCTCGGCGATGCACTGAAAAAATATTTTTAGAATTTTAGAAAGATCTTAATGTGAAGAATAAAGTGCCTAACTTTCTCAACATGATTTTCCTAGGCCACCATAGTTAATGATCCAGACATGGTCTAACCTAAACTTGATGTGTTTTCTAGGTAACTTAATATGATGACCTAACTTTTTCAAGTTGAGGTTTTGTAGGCCACCAGTTTTTATGGCTTAGAAAAAACAGTAGGTGAATATCAGGAAACCCACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCAAAAGAGATTGGAGAGT</pcr_primer_p1>
		<pcr_primer_p2>GTTTTCCTCTCTTTTTCAATGTC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GAGCAAAAGAGATTGGAGAGTTTGAACGCCACTCTTCTGGATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTGGCTGGTGTGGAGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAAC</canonical_amplicon>
		<polymorphic_amplicon>GAGCAAAAGAGATTGGAGAGTTTGAACGCCACTCTTCTGGATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTGGCTGGTGTGGAGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAATAAAGSTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11840</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>631111</contig_pos>
        <strand>+</strand>
        <context>ATAATAAAGS[A/T]TTTAAAYAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAATAAAGG</left_flank>
        <right_flank>TTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCCCACTCGAAGTTTCTAGAGCTATGCGAATTAAAATTAGACCAATGTGATGCGGAAAACAAAATTTTTTTTTTCGGGTTACTGTAGTTGTCGTTGTCGGACCTTTTATCTTTCGATGAGTTTTATCGATTTTTCAATGATTTTCAAGATTTTTTGCGCTTTTTTTTAATGGAAAAAAAATAGCTCAACATTGATGAAATTCGTCGAAAAATCCAGAATAACACCAATATTTCTTCTAGATTCTGAATCGCGTAAAATGGGTGTACGATGTGCCCGATGTGACTTGCGATCAAAAACAGAGCATCTATCAGTACCACGCAGGACTCAATGCGTCGTGTTGGGTGGAGGAGCAAAAGAGATTGGAGAGTTTGAACGCCACTCTTCTGGATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTGGCTGGTGTGGAGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAACCGAAAAAAAAACACATGCTGACTTTTGATTGACTTTTGACATGAAATACAAATATTTTTGTACACAATACAGGGAAAATGACAAAAAATTATCCCTAGATTTGCTCCTTCTGCTTCCGACTCTCCTCGTAACATGCCACTTTCATACACATCATTTCCTTGTGCTCGGCGATGCACTGAAAAAATATTTTTAGAATTTTAGAAAGATCTTAATGTGAAGAATAAAGTGCCTAACTTTCTCAACATGATTTTCCTAGGCCACCATAGTTAATGATCCAGACATGGTCTAACCTAAACTTGATGTGTTTTCTAGGTAACTTAATATGATGACCTAACTTTTTCAAGTTGAGGTTTTGTAGGCCACCAGTTTTTATGGCTTAGAAAAAACAGTAGGTGAATATCAGGAAACCCACCAG</canonical>
            <polymorphic>CGCCCACTCGAAGTTTCTAGAGCTATGCGAATTAAAATTAGACCAATGTGATGCGGAAAACAAAATTTTTTTTTTCGGGTTACTGTAGTTGTCGTTGTCGGACCTTTTATCTTTCGATGAGTTTTATCGATTTTTCAATGATTTTCAAGATTTTTTGCGCTTTTTTTTAATGGAAAAAAAATAGCTCAACATTGATGAAATTCGTCGAAAAATCCAGAATAACACCAATATTTCTTCTAGATTCTGAATCGCGTAAAATGGGTGTACGATGTGCCCGATGTGACTTGCGATCAAAAACAGAGCATCTATCAGTACCACGCAGGACTCAATGCGTCGTGTTGGGTGGAGGAGCAAAAGAGATTGGAGAGTTTGAACGCCACTCTTCTGGATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTGGCTGGTGTGGAGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAATAAAGGWTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAACCGAAAAAAAAACACATGCTGACTTTTGATTGACTTTTGACATGAAATACAAATATTTTTGTACACAATACAGGGAAAATGACAAAAAATTATCCCTAGATTTGCTCCTTCTGCTTCCGACTCTCCTCGTAACATGCCACTTTCATACACATCATTTCCTTGTGCTCGGCGATGCACTGAAAAAATATTTTTAGAATTTTAGAAAGATCTTAATGTGAAGAATAAAGTGCCTAACTTTCTCAACATGATTTTCCTAGGCCACCATAGTTAATGATCCAGACATGGTCTAACCTAAACTTGATGTGTTTTCTAGGTAACTTAATATGATGACCTAACTTTTTCAAGTTGAGGTTTTGTAGGCCACCAGTTTTTATGGCTTAGAAAAAACAGTAGGTGAATATCAGGAAACCCACCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCAAAAGAGATTGGAGAGT</pcr_primer_p1>
		<pcr_primer_p2>GTTTTCCTCTCTTTTTCAATGTC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GAGCAAAAGAGATTGGAGAGTTTGAACGCCACTCTTCTGGATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTGGCTGGTGTGGAGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAAC</canonical_amplicon>
		<polymorphic_amplicon>GAGCAAAAGAGATTGGAGAGTTTGAACGCCACTCTTCTGGATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTGGCTGGTGTGGAGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAATAAAGGWTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11841</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>631153</contig_pos>
        <strand>+</strand>
        <context>TGACATAAAA[A/T]AGAATAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATAAAGGTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAA</left_flank>
        <right_flank>AGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAACCGAAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAATGTGATGCGGAAAACAAAATTTTTTTTTTCGGGTTACTGTAGTTGTCGTTGTCGGACCTTTTATCTTTCGATGAGTTTTATCGATTTTTCAATGATTTTCAAGATTTTTTGCGCTTTTTTTTAATGGAAAAAAAATAGCTCAACATTGATGAAATTCGTCGAAAAATCCAGAATAACACCAATATTTCTTCTAGATTCTGAATCGCGTAAAATGGGTGTACGATGTGCCCGATGTGACTTGCGATCAAAAACAGAGCATCTATCAGTACCACGCAGGACTCAATGCGTCGTGTTGGGTGGAGGAGCAAAAGAGATTGGAGAGTTTGAACGCCACTCTTCTGGATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTGGCTGGTGTGGAGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAACCGAAAAAAAAACACATGCTGACTTTTGATTGACTTTTGACATGAAATACAAATATTTTTGTACACAATACAGGGAAAATGACAAAAAATTATCCCTAGATTTGCTCCTTCTGCTTCCGACTCTCCTCGTAACATGCCACTTTCATACACATCATTTCCTTGTGCTCGGCGATGCACTGAAAAAATATTTTTAGAATTTTAGAAAGATCTTAATGTGAAGAATAAAGTGCCTAACTTTCTCAACATGATTTTCCTAGGCCACCATAGTTAATGATCCAGACATGGTCTAACCTAAACTTGATGTGTTTTCTAGGTAACTTAATATGATGACCTAACTTTTTCAAGTTGAGGTTTTGTAGGCCACCAGTTTTTATGGCTTAGAAAAAACAGTAGGTGAATATCAGGAAACCCACCAGGCCATTTTGACATGCTGGCCTAACTTTCTCAACATGATTTTT</canonical>
            <polymorphic>CCAATGTGATGCGGAAAACAAAATTTTTTTTTTCGGGTTACTGTAGTTGTCGTTGTCGGACCTTTTATCTTTCGATGAGTTTTATCGATTTTTCAATGATTTTCAAGATTTTTTGCGCTTTTTTTTAATGGAAAAAAAATAGCTCAACATTGATGAAATTCGTCGAAAAATCCAGAATAACACCAATATTTCTTCTAGATTCTGAATCGCGTAAAATGGGTGTACGATGTGCCCGATGTGACTTGCGATCAAAAACAGAGCATCTATCAGTACCACGCAGGACTCAATGCGTCGTGTTGGGTGGAGGAGCAAAAGAGATTGGAGAGTTTGAACGCCACTCTTCTGGATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTGGCTGGTGTGGAGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAWAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAACCGAAAAAAAAACACATGCTGACTTTTGATTGACTTTTGACATGAAATACAAATATTTTTGTACACAATACAGGGAAAATGACAAAAAATTATCCCTAGATTTGCTCCTTCTGCTTCCGACTCTCCTCGTAACATGCCACTTTCATACACATCATTTCCTTGTGCTCGGCGATGCACTGAAAAAATATTTTTAGAATTTTAGAAAGATCTTAATGTGAAGAATAAAGTGCCTAACTTTCTCAACATGATTTTCCTAGGCCACCATAGTTAATGATCCAGACATGGTCTAACCTAAACTTGATGTGTTTTCTAGGTAACTTAATATGATGACCTAACTTTTTCAAGTTGAGGTTTTGTAGGCCACCAGTTTTTATGGCTTAGAAAAAACAGTAGGTGAATATCAGGAAACCCACCAGGCCATTTTGACATGCTGGCCTAACTTTCTCAACATGATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGAGGAACAAGAATTGAATAA</pcr_primer_p1>
		<pcr_primer_p2>GTATGAAAGTGGCATGTTACG</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>TGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAACCGAAAAAAAAACACATGCTGACTTTTGATTGACTTTTGACATGAAATACAAATATTTTTGTACACAATACAGGGAAAATGACAAAAAATTATCCCTAGATTTGCTCCTTCTGCTTCCGACTCTCCTCGTAACATGCCACTTTCATAC</canonical_amplicon>
		<polymorphic_amplicon>TGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAWAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAACCGAAAAAAAAACACATGCTGACTTTTGATTGACTTTTGACATGAAATACAAATATTTTTGTACACAATACAGGGAAAATGACAAAAAATTATCCCTAGATTTGCTCCTTCTGCTTCCGACTCTCCTCGTAACATGCCACTTTCATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11842</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>631169</contig_pos>
        <strand></strand>
        <context>AAAATTCACA[C/T]GAAAGACATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACA</left_flank>
        <right_flank>GAAAGACATTGAAAAAGAGAGGAAAACCGAAAAAAAAACACATGCTGACT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAAAATTTTTTTTTTCGGGTTACTGTAGTTGTCGTTGTCGGACCTTTTATCTTTCGATGAGTTTTATCGATTTTTCAATGATTTTCAAGATTTTTTGCGCTTTTTTTTAATGGAAAAAAAATAGCTCAACATTGATGAAATTCGTCGAAAAATCCAGAATAACACCAATATTTCTTCTAGATTCTGAATCGCGTAAAATGGGTGTACGATGTGCCCGATGTGACTTGCGATCAAAAACAGAGCATCTATCAGTACCACGCAGGACTCAATGCGTCGTGTTGGGTGGAGGAGCAAAAGAGATTGGAGAGTTTGAACGCCACTCTTCTGGATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTGGCTGGTGTGGAGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAACCGAAAAAAAAACACATGCTGACTTTTGATTGACTTTTGACATGAAATACAAATATTTTTGTACACAATACAGGGAAAATGACAAAAAATTATCCCTAGATTTGCTCCTTCTGCTTCCGACTCTCCTCGTAACATGCCACTTTCATACACATCATTTCCTTGTGCTCGGCGATGCACTGAAAAAATATTTTTAGAATTTTAGAAAGATCTTAATGTGAAGAATAAAGTGCCTAACTTTCTCAACATGATTTTCCTAGGCCACCATAGTTAATGATCCAGACATGGTCTAACCTAAACTTGATGTGTTTTCTAGGTAACTTAATATGATGACCTAACTTTTTCAAGTTGAGGTTTTGTAGGCCACCAGTTTTTATGGCTTAGAAAAAACAGTAGGTGAATATCAGGAAACCCACCAGGCCATTTTGACATGCTGGCCTAACTTTCTCAACATGATTTTTCTAGGTCACCATAAAT</canonical>
            <polymorphic>AACAAAATTTTTTTTTTCGGGTTACTGTAGTTGTCGTTGTCGGACCTTTTATCTTTCGATGAGTTTTATCGATTTTTCAATGATTTTCAAGATTTTTTGCGCTTTTTTTTAATGGAAAAAAAATAGCTCAACATTGATGAAATTCGTCGAAAAATCCAGAATAACACCAATATTTCTTCTAGATTCTGAATCGCGTAAAATGGGTGTACGATGTGCCCGATGTGACTTGCGATCAAAAACAGAGCATCTATCAGTACCACGCAGGACTCAATGCGTCGTGTTGGGTGGAGGAGCAAAAGAGATTGGAGAGTTTGAACGCCACTCTTCTGGATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTGGCTGGTGTGGAGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACAYGAAAGACATTGAAAAAGAGAGGAAAACCGAAAAAAAAACACATGCTGACTTTTGATTGACTTTTGACATGAAATACAAATATTTTTGTACACAATACAGGGAAAATGACAAAAAATTATCCCTAGATTTGCTCCTTCTGCTTCCGACTCTCCTCGTAACATGCCACTTTCATACACATCATTTCCTTGTGCTCGGCGATGCACTGAAAAAATATTTTTAGAATTTTAGAAAGATCTTAATGTGAAGAATAAAGTGCCTAACTTTCTCAACATGATTTTCCTAGGCCACCATAGTTAATGATCCAGACATGGTCTAACCTAAACTTGATGTGTTTTCTAGGTAACTTAATATGATGACCTAACTTTTTCAAGTTGAGGTTTTGTAGGCCACCAGTTTTTATGGCTTAGAAAAAACAGTAGGTGAATATCAGGAAACCCACCAGGCCATTTTGACATGCTGGCCTAACTTTCTCAACATGATTTTTCTAGGTCACCATAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>166 108 74 58 54 51 44 41 41 40 35 34 33 32 27 21 21 18 16 15 12 12 10 9 9 8 7 2 2</canonical_bands>
                <polymorphic_bands>166 108 74 58 54 51 44 43 41 40 35 34 33 32 27 21 21 18 16 15 12 12 10 9 9 8 7 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGAGGAACAAGAATTGAATAA</pcr_primer_p1>
		<pcr_primer_p2>GTATGAAAGTGGCATGTTACG</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>TGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAACCGAAAAAAAAACACATGCTGACTTTTGATTGACTTTTGACATGAAATACAAATATTTTTGTACACAATACAGGGAAAATGACAAAAAATTATCCCTAGATTTGCTCCTTCTGCTTCCGACTCTCCTCGTAACATGCCACTTTCATAC</canonical_amplicon>
		<polymorphic_amplicon>TGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACAYGAAAGACATTGAAAAAGAGAGGAAAACCGAAAAAAAAACACATGCTGACTTTTGATTGACTTTTGACATGAAATACAAATATTTTTGTACACAATACAGGGAAAATGACAAAAAATTATCCCTAGATTTGCTCCTTCTGCTTCCGACTCTCCTCGTAACATGCCACTTTCATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11843</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>631205</contig_pos>
        <strand>+</strand>
        <context>ACCGAAAAAA[A/G]AACACATGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAACCGAAAAAA</left_flank>
        <right_flank>AACACATGCTGACTTTTGATTGACTTTTGACATGAAATACAAATATTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTCGGACCTTTTATCTTTCGATGAGTTTTATCGATTTTTCAATGATTTTCAAGATTTTTTGCGCTTTTTTTTAATGGAAAAAAAATAGCTCAACATTGATGAAATTCGTCGAAAAATCCAGAATAACACCAATATTTCTTCTAGATTCTGAATCGCGTAAAATGGGTGTACGATGTGCCCGATGTGACTTGCGATCAAAAACAGAGCATCTATCAGTACCACGCAGGACTCAATGCGTCGTGTTGGGTGGAGGAGCAAAAGAGATTGGAGAGTTTGAACGCCACTCTTCTGGATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTGGCTGGTGTGGAGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAACCGAAAAAAAAACACATGCTGACTTTTGATTGACTTTTGACATGAAATACAAATATTTTTGTACACAATACAGGGAAAATGACAAAAAATTATCCCTAGATTTGCTCCTTCTGCTTCCGACTCTCCTCGTAACATGCCACTTTCATACACATCATTTCCTTGTGCTCGGCGATGCACTGAAAAAATATTTTTAGAATTTTAGAAAGATCTTAATGTGAAGAATAAAGTGCCTAACTTTCTCAACATGATTTTCCTAGGCCACCATAGTTAATGATCCAGACATGGTCTAACCTAAACTTGATGTGTTTTCTAGGTAACTTAATATGATGACCTAACTTTTTCAAGTTGAGGTTTTGTAGGCCACCAGTTTTTATGGCTTAGAAAAAACAGTAGGTGAATATCAGGAAACCCACCAGGCCATTTTGACATGCTGGCCTAACTTTCTCAACATGATTTTTCTAGGTCACCATAAATGATGGTCCAGAAATGATATAGCATGTACGTGATGTA</canonical>
            <polymorphic>TTGTCGGACCTTTTATCTTTCGATGAGTTTTATCGATTTTTCAATGATTTTCAAGATTTTTTGCGCTTTTTTTTAATGGAAAAAAAATAGCTCAACATTGATGAAATTCGTCGAAAAATCCAGAATAACACCAATATTTCTTCTAGATTCTGAATCGCGTAAAATGGGTGTACGATGTGCCCGATGTGACTTGCGATCAAAAACAGAGCATCTATCAGTACCACGCAGGACTCAATGCGTCGTGTTGGGTGGAGGAGCAAAAGAGATTGGAGAGTTTGAACGCCACTCTTCTGGATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTGGCTGGTGTGGAGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAACCGAAAAAARAACACATGCTGACTTTTGATTGACTTTTGACATGAAATACAAATATTTTTGTACACAATACAGGGAAAATGACAAAAAATTATCCCTAGATTTGCTCCTTCTGCTTCCGACTCTCCTCGTAACATGCCACTTTCATACACATCATTTCCTTGTGCTCGGCGATGCACTGAAAAAATATTTTTAGAATTTTAGAAAGATCTTAATGTGAAGAATAAAGTGCCTAACTTTCTCAACATGATTTTCCTAGGCCACCATAGTTAATGATCCAGACATGGTCTAACCTAAACTTGATGTGTTTTCTAGGTAACTTAATATGATGACCTAACTTTTTCAAGTTGAGGTTTTGTAGGCCACCAGTTTTTATGGCTTAGAAAAAACAGTAGGTGAATATCAGGAAACCCACCAGGCCATTTTGACATGCTGGCCTAACTTTCTCAACATGATTTTTCTAGGTCACCATAAATGATGGTCCAGAAATGATATAGCATGTACGTGATGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGAGGAACAAGAATTGAATAA</pcr_primer_p1>
		<pcr_primer_p2>GTATGAAAGTGGCATGTTACG</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>TGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAACCGAAAAAAAAACACATGCTGACTTTTGATTGACTTTTGACATGAAATACAAATATTTTTGTACACAATACAGGGAAAATGACAAAAAATTATCCCTAGATTTGCTCCTTCTGCTTCCGACTCTCCTCGTAACATGCCACTTTCATAC</canonical_amplicon>
		<polymorphic_amplicon>TGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAACCGAAAAAARAACACATGCTGACTTTTGATTGACTTTTGACATGAAATACAAATATTTTTGTACACAATACAGGGAAAATGACAAAAAATTATCCCTAGATTTGCTCCTTCTGCTTCCGACTCTCCTCGTAACATGCCACTTTCATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11844</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>631300</contig_pos>
        <strand>+</strand>
        <context>CCTAGATTTG[A/C]TCCTTCTGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTTTGTACACAATACAGGGAAAATGACAAAAAATTATCCCTAGATTTG</left_flank>
        <right_flank>TCCTTCTGCTTCCGACTCTCCTCGTAACATGCCACTTTCATACACATCAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTGATGAAATTCGTCGAAAAATCCAGAATAACACCAATATTTCTTCTAGATTCTGAATCGCGTAAAATGGGTGTACGATGTGCCCGATGTGACTTGCGATCAAAAACAGAGCATCTATCAGTACCACGCAGGACTCAATGCGTCGTGTTGGGTGGAGGAGCAAAAGAGATTGGAGAGTTTGAACGCCACTCTTCTGGATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTGGCTGGTGTGGAGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAACCGAAAAAAAAACACATGCTGACTTTTGATTGACTTTTGACATGAAATACAAATATTTTTGTACACAATACAGGGAAAATGACAAAAAATTATCCCTAGATTTGCTCCTTCTGCTTCCGACTCTCCTCGTAACATGCCACTTTCATACACATCATTTCCTTGTGCTCGGCGATGCACTGAAAAAATATTTTTAGAATTTTAGAAAGATCTTAATGTGAAGAATAAAGTGCCTAACTTTCTCAACATGATTTTCCTAGGCCACCATAGTTAATGATCCAGACATGGTCTAACCTAAACTTGATGTGTTTTCTAGGTAACTTAATATGATGACCTAACTTTTTCAAGTTGAGGTTTTGTAGGCCACCAGTTTTTATGGCTTAGAAAAAACAGTAGGTGAATATCAGGAAACCCACCAGGCCATTTTGACATGCTGGCCTAACTTTCTCAACATGATTTTTCTAGGTCACCATAAATGATGGTCCAGAAATGATATAGCATGTACGTGATGTATTTTCCAGGTAATTCAACATGGTGGCCTGACTTTTTCTAGTTGAGTTTACTAGGCCACCATGTAAATGATTTAGTGTTTGTGACCCAATTTTAGA</canonical>
            <polymorphic>CATTGATGAAATTCGTCGAAAAATCCAGAATAACACCAATATTTCTTCTAGATTCTGAATCGCGTAAAATGGGTGTACGATGTGCCCGATGTGACTTGCGATCAAAAACAGAGCATCTATCAGTACCACGCAGGACTCAATGCGTCGTGTTGGGTGGAGGAGCAAAAGAGATTGGAGAGTTTGAACGCCACTCTTCTGGATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTGGCTGGTGTGGAGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAACCGAAAAAAAAACACATGCTGACTTTTGATTGACTTTTGACATGAAATACAAATATTTTTGTACACAATACAGGGAAAATGACAAAAAATTATCCCTAGATTTGMTCCTTCTGCTTCCGACTCTCCTCGTAACATGCCACTTTCATACACATCATTTCCTTGTGCTCGGCGATGCACTGAAAAAATATTTTTAGAATTTTAGAAAGATCTTAATGTGAAGAATAAAGTGCCTAACTTTCTCAACATGATTTTCCTAGGCCACCATAGTTAATGATCCAGACATGGTCTAACCTAAACTTGATGTGTTTTCTAGGTAACTTAATATGATGACCTAACTTTTTCAAGTTGAGGTTTTGTAGGCCACCAGTTTTTATGGCTTAGAAAAAACAGTAGGTGAATATCAGGAAACCCACCAGGCCATTTTGACATGCTGGCCTAACTTTCTCAACATGATTTTTCTAGGTCACCATAAATGATGGTCCAGAAATGATATAGCATGTACGTGATGTATTTTCCAGGTAATTCAACATGGTGGCCTGACTTTTTCTAGTTGAGTTTACTAGGCCACCATGTAAATGATTTAGTGTTTGTGACCCAATTTTAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGAGGAACAAGAATTGAATAA</pcr_primer_p1>
		<pcr_primer_p2>AGGAAATGATGTGTATGAAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>TGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAACCGAAAAAAAAACACATGCTGACTTTTGATTGACTTTTGACATGAAATACAAATATTTTTGTACACAATACAGGGAAAATGACAAAAAATTATCCCTAGATTTGCTCCTTCTGCTTCCGACTCTCCTCGTAACATGCCACTTTCATACACATCATTTCCT</canonical_amplicon>
		<polymorphic_amplicon>TGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAACCGAAAAAAAAACACATGCTGACTTTTGATTGACTTTTGACATGAAATACAAATATTTTTGTACACAATACAGGGAAAATGACAAAAAATTATCCCTAGATTTGMTCCTTCTGCTTCCGACTCTCCTCGTAACATGCCACTTTCATACACATCATTTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11845</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>633779</contig_pos>
        <strand>+</strand>
        <context>CATGTAGTTG[A/G]GATCATTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGCCTCCCAAATGAGCACTTCCTCGGTGTCTGGACCATCCATGTAGTTG</left_flank>
        <right_flank>GATCATTGAAGTCTTCAACGATTTTCGCTTGATACTCGGGTCCCACGTTG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACATGTCCACAAAAAATGATGCGGGCGGAATGATGCGTTTAGCTTCATCGTCGTCGTATCTACTATCGTTGTGTTTCGAGCTGGAGAACTGCTTGTACTTGATCCATTTCTTCGAACTGTAGTAGTGTTTGACAATAGAACGAATCGAGCGGTGGCATAGCTGAAAAGATATTTGAAGCTTATACAAGAGGACCTAGAAACTCACGCCGCTATGAATCGACGAGAAGTTCTTTCCAAAGTTACTGAAGCATCGTTCGAAAATCAGACTTTCTTCTTCTGACCAAGTTTCGTTGATTTCCGGACGAGTAGAGATCAGCTTATAGGCTTCATCGTAATTGAATTTTTTGAACTTTAGAAGGAAGAGAACGGCTTCAGTTGGAATCAAAAATCGAGCTGATGTTTCGGTGACCCAATTCCTCAGCTTCTCCTTTTCTAGGGTTTCATTTGAAGCCTCCCAAATGAGCACTTCCTCGGTGTCTGGACCATCCATGTAGTTGAGATCATTGAAGTCTTCAACGATTTTCGCTTGATACTCGGGTCCCACGTTGATCTCCTTATTCACATTTGATAGTGGTGCGTTTACTGAAAATAGTGATTCTAGATTTCGATGGAAATTTTAGAAAAAAATTCTGAAAATTCTAAAATCCGCTAGCTAGTTTCAGCCAAGTTTAATAAGTTCCAGTACCAGAATTGTGTTTCTAGTGCAAAAACAGCGATTTTCTCAACTTTTGGGACATTTCAGAGCACAAAACTTCAAATTTCAGGCTTTTTGTCGATGTTTTTGGTTTTCGCATTAAAAAATCGCTTATTTTCCATTGATTTTTTTTCAATTTTTTTCCTTGAAAAATCCCCAAAAAAATTAAAAATTCGGAAAAAAAATTCGAGAAAAAGTGTGAAATATGAAACTTCCTTGAAATTTTAGTACAAATTCCATGTTCGAAAACGTCTTAGAAGTTGAGAAAATCGCTTTTTGCACTAAAAACGCGATTTTTTGGTAC</canonical>
            <polymorphic>ACACATGTCCACAAAAAATGATGCGGGCGGAATGATGCGTTTAGCTTCATCGTCGTCGTATCTACTATCGTTGTGTTTCGAGCTGGAGAACTGCTTGTACTTGATCCATTTCTTCGAACTGTAGTAGTGTTTGACAATAGAACGAATCGAGCGGTGGCATAGCTGAAAAGATATTTGAAGCTTATACAAGAGGACCTAGAAACTCACGCCGCTATGAATCGACGAGAAGTTCTTTCCAAAGTTACTGAAGCATCGTTCGAAAATCAGACTTTCTTCTTCTGACCAAGTTTCGTTGATTTCCGGACGAGTAGAGATCAGCTTATAGGCTTCATCGTAATTGAATTTTTTGAACTTTAGAAGGAAGAGAACGGCTTCAGTTGGAATCAAAAATCGAGCTGATGTTTCGGTGACCCAATTCCTCAGCTTCTCCTTTTCTAGGGTTTCATTTGAAGCCTCCCAAATGAGCACTTCCTCGGTGTCTGGACCATCCATGTAGTTGRGATCATTGAAGTCTTCAACGATTTTCGCTTGATACTCGGGTCCCACGTTGATCTCCTTATTCACATTTGATAGTGGTGCGTTTACTGAAAATAGTGATTCTAGATTTCGATGGAAATTTTAGAAAAAAATTCTGAAAATTCTAAAATCCGCTAGCTAGTTTCAGCCAAGTTTAATAAGTTCCAGTACCAGAATTGTGTTTCTAGTGCAAAAACAGCGATTTTCTCAACTTTTGGGACATTTCAGAGCACAAAACTTCAAATTTCAGGCTTTTTGTCGATGTTTTTGGTTTTCGCATTAAAAAATCGCTTATTTTCCATTGATTTTTTTTCAATTTTTTTCCTTGAAAAATCCCCAAAAAAATTAAAAATTCGGAAAAAAAATTCGAGAAAAAGTGTGAAATATGAAACTTCCTTGAAATTTTAGTACAAATTCCATGTTCGAAAACGTCTTAGAAGTTGAGAAAATCGCTTTTTGCACTAAAAACGCGATTTTTTGGTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCTTTTCTAGGGTTTCATTT</pcr_primer_p1>
		<pcr_primer_p2>TATTAAACTTGGCTGAAACTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCCTTTTCTAGGGTTTCATTTGAAGCCTCCCAAATGAGCACTTCCTCGGTGTCTGGACCATCCATGTAGTTGAGATCATTGAAGTCTTCAACGATTTTCGCTTGATACTCGGGTCCCACGTTGATCTCCTTATTCACATTTGATAGTGGTGCGTTTACTGAAAATAGTGATTCTAGATTTCGATGGAAATTTTAGAAAAAAATTCTGAAAATTCTAAAATCCGCTAGCTAGTTTCAGCCAAGTTTAATA</canonical_amplicon>
		<polymorphic_amplicon>CTCCTTTTCTAGGGTTTCATTTGAAGCCTCCCAAATGAGCACTTCCTCGGTGTCTGGACCATCCATGTAGTTGRGATCATTGAAGTCTTCAACGATTTTCGCTTGATACTCGGGTCCCACGTTGATCTCCTTATTCACATTTGATAGTGGTGCGTTTACTGAAAATAGTGATTCTAGATTTCGATGGAAATTTTAGAAAAAAATTCTGAAAATTCTAAAATCCGCTAGCTAGTTTCAGCCAAGTTTAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11846</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>633604</contig_pos>
        <strand>+</strand>
        <context>TCAGCTTATA[A/G]GCTTCATCGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTCTGACCAAGTTTCGTTGATTTCCGGACGAGTAGAGATCAGCTTATA</left_flank>
        <right_flank>GCTTCATCGTAATTGAATTTTTTGAACTTTAGAAGGAAGAGAACGGCTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAAGGTTTGTGGGTCGTGGAACACCCATCTTTCGGTAGTAAATCACACAGGGACGGCACTCGCCACGTGGCGTTTTTCCAGAACGTTGAACGAGCTGAAACAAATTTGTGGGTTGAAGGACACACCCAAAAATATCTCAACCTCCATGTTCTCCGCTCGCTGACCACAATTTTCACACATGTCCACAAAAAATGATGCGGGCGGAATGATGCGTTTAGCTTCATCGTCGTCGTATCTACTATCGTTGTGTTTCGAGCTGGAGAACTGCTTGTACTTGATCCATTTCTTCGAACTGTAGTAGTGTTTGACAATAGAACGAATCGAGCGGTGGCATAGCTGAAAAGATATTTGAAGCTTATACAAGAGGACCTAGAAACTCACGCCGCTATGAATCGACGAGAAGTTCTTTCCAAAGTTACTGAAGCATCGTTCGAAAATCAGACTTTCTTCTTCTGACCAAGTTTCGTTGATTTCCGGACGAGTAGAGATCAGCTTATAGGCTTCATCGTAATTGAATTTTTTGAACTTTAGAAGGAAGAGAACGGCTTCAGTTGGAATCAAAAATCGAGCTGATGTTTCGGTGACCCAATTCCTCAGCTTCTCCTTTTCTAGGGTTTCATTTGAAGCCTCCCAAATGAGCACTTCCTCGGTGTCTGGACCATCCATGTAGTTGAGATCATTGAAGTCTTCAACGATTTTCGCTTGATACTCGGGTCCCACGTTGATCTCCTTATTCACATTTGATAGTGGTGCGTTTACTGAAAATAGTGATTCTAGATTTCGATGGAAATTTTAGAAAAAAATTCTGAAAATTCTAAAATCCGCTAGCTAGTTTCAGCCAAGTTTAATAAGTTCCAGTACCAGAATTGTGTTTCTAGTGCAAAAACAGCGATTTTCTCAACTTTTGGGACATTTCAGAGCACAAAACTTCAAATTTCAGGCTTTTTGTCGATGTTTTTGGTTTTCGCATTAAAAAATCGCTTATTTTCCATTGATTTT</canonical>
            <polymorphic>CGAAGGTTTGTGGGTCGTGGAACACCCATCTTTCGGTAGTAAATCACACAGGGACGGCACTCGCCACGTGGCGTTTTTCCAGAACGTTGAACGAGCTGAAACAAATTTGTGGGTTGAAGGACACACCCAAAAATATCTCAACCTCCATGTTCTCCGCTCGCTGACCACAATTTTCACACATGTCCACAAAAAATGATGCGGGCGGAATGATGCGTTTAGCTTCATCGTCGTCGTATCTACTATCGTTGTGTTTCGAGCTGGAGAACTGCTTGTACTTGATCCATTTCTTCGAACTGTAGTAGTGTTTGACAATAGAACGAATCGAGCGGTGGCATAGCTGAAAAGATATTTGAAGCTTATACAAGAGGACCTAGAAACTCACGCCGCTATGAATCGACGAGAAGTTCTTTCCAAAGTTACTGAAGCATCGTTCGAAAATCAGACTTTCTTCTTCTGACCAAGTTTCGTTGATTTCCGGACGAGTAGAGATCAGCTTATARGCTTCATCGTAATTGAATTTTTTGAACTTTAGAAGGAAGAGAACGGCTTCAGTTGGAATCAAAAATCGAGCTGATGTTTCGGTGACCCAATTCCTCAGCTTCTCCTTTTCTAGGGTTTCATTTGAAGCCTCCCAAATGAGCACTTCCTCGGTGTCTGGACCATCCATGTAGTTGAGATCATTGAAGTCTTCAACGATTTTCGCTTGATACTCGGGTCCCACGTTGATCTCCTTATTCACATTTGATAGTGGTGCGTTTACTGAAAATAGTGATTCTAGATTTCGATGGAAATTTTAGAAAAAAATTCTGAAAATTCTAAAATCCGCTAGCTAGTTTCAGCCAAGTTTAATAAGTTCCAGTACCAGAATTGTGTTTCTAGTGCAAAAACAGCGATTTTCTCAACTTTTGGGACATTTCAGAGCACAAAACTTCAAATTTCAGGCTTTTTGTCGATGTTTTTGGTTTTCGCATTAAAAAATCGCTTATTTTCCATTGATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>202 138 124 103 95 80 58 45 38 29 28 24 18 10 8</canonical_bands>
                <polymorphic_bands>202 138 124 103 95 80 58 53 38 29 28 24 18 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTATGAATCGACGAGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>CTTCAAATGAAACCCTAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GCTATGAATCGACGAGAAGTTCTTTCCAAAGTTACTGAAGCATCGTTCGAAAATCAGACTTTCTTCTTCTGACCAAGTTTCGTTGATTTCCGGACGAGTAGAGATCAGCTTATAGGCTTCATCGTAATTGAATTTTTTGAACTTTAGAAGGAAGAGAACGGCTTCAGTTGGAATCAAAAATCGAGCTGATGTTTCGGTGACCCAATTCCTCAGCTTCTCCTTTTCTAGGGTTTCATTTGAAG</canonical_amplicon>
		<polymorphic_amplicon>GCTATGAATCGACGAGAAGTTCTTTCCAAAGTTACTGAAGCATCGTTCGAAAATCAGACTTTCTTCTTCTGACCAAGTTTCGTTGATTTCCGGACGAGTAGAGATCAGCTTATARGCTTCATCGTAATTGAATTTTTTGAACTTTAGAAGGAAGAGAACGGCTTCAGTTGGAATCAAAAATCGAGCTGATGTTTCGGTGACCCAATTCCTCAGCTTCTCCTTTTCTAGGGTTTCATTTGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11847</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>633484</contig_pos>
        <strand>+</strand>
        <context>CCTAGAAACT[C/G]ACGCCGCTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGGCATAGCTGAAAAGATATTTGAAGCTTATACAAGAGGACCTAGAAACT</left_flank>
        <right_flank>ACGCCGCTATGAATCGACGAGAAGTTCTTTCCAAAGTTACTGAAGCATCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAAAGTCTTTCATATACATACGGTATGCTGAAATATCGTCATTTTTATACAAAACTAGCTGAAGCACTCACCATTCGGACACCTTATTTCCTTGTACAGACGTTCAGAGAGAGTCATCCGAAGGTTTGTGGGTCGTGGAACACCCATCTTTCGGTAGTAAATCACACAGGGACGGCACTCGCCACGTGGCGTTTTTCCAGAACGTTGAACGAGCTGAAACAAATTTGTGGGTTGAAGGACACACCCAAAAATATCTCAACCTCCATGTTCTCCGCTCGCTGACCACAATTTTCACACATGTCCACAAAAAATGATGCGGGCGGAATGATGCGTTTAGCTTCATCGTCGTCGTATCTACTATCGTTGTGTTTCGAGCTGGAGAACTGCTTGTACTTGATCCATTTCTTCGAACTGTAGTAGTGTTTGACAATAGAACGAATCGAGCGGTGGCATAGCTGAAAAGATATTTGAAGCTTATACAAGAGGACCTAGAAACTCACGCCGCTATGAATCGACGAGAAGTTCTTTCCAAAGTTACTGAAGCATCGTTCGAAAATCAGACTTTCTTCTTCTGACCAAGTTTCGTTGATTTCCGGACGAGTAGAGATCAGCTTATAGGCTTCATCGTAATTGAATTTTTTGAACTTTAGAAGGAAGAGAACGGCTTCAGTTGGAATCAAAAATCGAGCTGATGTTTCGGTGACCCAATTCCTCAGCTTCTCCTTTTCTAGGGTTTCATTTGAAGCCTCCCAAATGAGCACTTCCTCGGTGTCTGGACCATCCATGTAGTTGAGATCATTGAAGTCTTCAACGATTTTCGCTTGATACTCGGGTCCCACGTTGATCTCCTTATTCACATTTGATAGTGGTGCGTTTACTGAAAATAGTGATTCTAGATTTCGATGGAAATTTTAGAAAAAAATTCTGAAAATTCTAAAATCCGCTAGCTAGTTTCAGCCAAGTTTAATAAGTTCCAGTACCAGAATTGTGTTTCTAGT</canonical>
            <polymorphic>TTCAAAGTCTTTCATATACATACGGTATGCTGAAATATCGTCATTTTTATACAAAACTAGCTGAAGCACTCACCATTCGGACACCTTATTTCCTTGTACAGACGTTCAGAGAGAGTCATCCGAAGGTTTGTGGGTCGTGGAACACCCATCTTTCGGTAGTAAATCACACAGGGACGGCACTCGCCACGTGGCGTTTTTCCAGAACGTTGAACGAGCTGAAACAAATTTGTGGGTTGAAGGACACACCCAAAAATATCTCAACCTCCATGTTCTCCGCTCGCTGACCACAATTTTCACACATGTCCACAAAAAATGATGCGGGCGGAATGATGCGTTTAGCTTCATCGTCGTCGTATCTACTATCGTTGTGTTTCGAGCTGGAGAACTGCTTGTACTTGATCCATTTCTTCGAACTGTAGTAGTGTTTGACAATAGAACGAATCGAGCGGTGGCATAGCTGAAAAGATATTTGAAGCTTATACAAGAGGACCTAGAAACTSACGCCGCTATGAATCGACGAGAAGTTCTTTCCAAAGTTACTGAAGCATCGTTCGAAAATCAGACTTTCTTCTTCTGACCAAGTTTCGTTGATTTCCGGACGAGTAGAGATCAGCTTATAGGCTTCATCGTAATTGAATTTTTTGAACTTTAGAAGGAAGAGAACGGCTTCAGTTGGAATCAAAAATCGAGCTGATGTTTCGGTGACCCAATTCCTCAGCTTCTCCTTTTCTAGGGTTTCATTTGAAGCCTCCCAAATGAGCACTTCCTCGGTGTCTGGACCATCCATGTAGTTGAGATCATTGAAGTCTTCAACGATTTTCGCTTGATACTCGGGTCCCACGTTGATCTCCTTATTCACATTTGATAGTGGTGCGTTTACTGAAAATAGTGATTCTAGATTTCGATGGAAATTTTAGAAAAAAATTCTGAAAATTCTAAAATCCGCTAGCTAGTTTCAGCCAAGTTTAATAAGTTCCAGTACCAGAATTGTGTTTCTAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>203 101 68 67 64 58 54 50 49 42 41 27 22 18 18 12 12 11 11 11 9 8 8 7 7 5 4 4 3 2 2 2</canonical_bands>
                <polymorphic_bands>253 101 68 67 64 58 54 49 42 41 27 22 18 18 12 12 11 11 11 9 8 8 7 7 5 4 4 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCATCGTCGTCGTATCTACTAT</pcr_primer_p1>
		<pcr_primer_p2>AAACTTGGTCAGAAGAAGAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTCATCGTCGTCGTATCTACTATCGTTGTGTTTCGAGCTGGAGAACTGCTTGTACTTGATCCATTTCTTCGAACTGTAGTAGTGTTTGACAATAGAACGAATCGAGCGGTGGCATAGCTGAAAAGATATTTGAAGCTTATACAAGAGGACCTAGAAACTCACGCCGCTATGAATCGACGAGAAGTTCTTTCCAAAGTTACTGAAGCATCGTTCGAAAATCAGACTTTCTTCTTCTGACCAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>TTCATCGTCGTCGTATCTACTATCGTTGTGTTTCGAGCTGGAGAACTGCTTGTACTTGATCCATTTCTTCGAACTGTAGTAGTGTTTGACAATAGAACGAATCGAGCGGTGGCATAGCTGAAAAGATATTTGAAGCTTATACAAGAGGACCTAGAAACTSACGCCGCTATGAATCGACGAGAAGTTCTTTCCAAAGTTACTGAAGCATCGTTCGAAAATCAGACTTTCTTCTTCTGACCAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11848</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>633352</contig_pos>
        <strand>+</strand>
        <context>TACTATCGTT[A/G]TGTTTCGAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCGGGCGGAATGATGCGTTTAGCTTCATCGTCGTCGTATCTACTATCGTT</left_flank>
        <right_flank>TGTTTCGAGCTGGAGAACTGCTTGTACTTGATCCATTTCTTCGAACTGTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCCCGTTCTGGTTTCGAGGATTCGGTGAGGGACAGTAGTAGTCGCAAGGTCCAATGATATCTTCTACAGTTTGGCTCTTTCCCATTTTTCGTCGTATGAGCGTCTCTCCGTTCGCCGGCTCCATCATTCGTTCAAAGTCTTTCATATACATACGGTATGCTGAAATATCGTCATTTTTATACAAAACTAGCTGAAGCACTCACCATTCGGACACCTTATTTCCTTGTACAGACGTTCAGAGAGAGTCATCCGAAGGTTTGTGGGTCGTGGAACACCCATCTTTCGGTAGTAAATCACACAGGGACGGCACTCGCCACGTGGCGTTTTTCCAGAACGTTGAACGAGCTGAAACAAATTTGTGGGTTGAAGGACACACCCAAAAATATCTCAACCTCCATGTTCTCCGCTCGCTGACCACAATTTTCACACATGTCCACAAAAAATGATGCGGGCGGAATGATGCGTTTAGCTTCATCGTCGTCGTATCTACTATCGTTGTGTTTCGAGCTGGAGAACTGCTTGTACTTGATCCATTTCTTCGAACTGTAGTAGTGTTTGACAATAGAACGAATCGAGCGGTGGCATAGCTGAAAAGATATTTGAAGCTTATACAAGAGGACCTAGAAACTCACGCCGCTATGAATCGACGAGAAGTTCTTTCCAAAGTTACTGAAGCATCGTTCGAAAATCAGACTTTCTTCTTCTGACCAAGTTTCGTTGATTTCCGGACGAGTAGAGATCAGCTTATAGGCTTCATCGTAATTGAATTTTTTGAACTTTAGAAGGAAGAGAACGGCTTCAGTTGGAATCAAAAATCGAGCTGATGTTTCGGTGACCCAATTCCTCAGCTTCTCCTTTTCTAGGGTTTCATTTGAAGCCTCCCAAATGAGCACTTCCTCGGTGTCTGGACCATCCATGTAGTTGAGATCATTGAAGTCTTCAACGATTTTCGCTTGATACTCGGGTCCCACGTTGATCTCCTTATTCACATTTGATAG</canonical>
            <polymorphic>ATTCCCGTTCTGGTTTCGAGGATTCGGTGAGGGACAGTAGTAGTCGCAAGGTCCAATGATATCTTCTACAGTTTGGCTCTTTCCCATTTTTCGTCGTATGAGCGTCTCTCCGTTCGCCGGCTCCATCATTCGTTCAAAGTCTTTCATATACATACGGTATGCTGAAATATCGTCATTTTTATACAAAACTAGCTGAAGCACTCACCATTCGGACACCTTATTTCCTTGTACAGACGTTCAGAGAGAGTCATCCGAAGGTTTGTGGGTCGTGGAACACCCATCTTTCGGTAGTAAATCACACAGGGACGGCACTCGCCACGTGGCGTTTTTCCAGAACGTTGAACGAGCTGAAACAAATTTGTGGGTTGAAGGACACACCCAAAAATATCTCAACCTCCATGTTCTCCGCTCGCTGACCACAATTTTCACACATGTCCACAAAAAATGATGCGGGCGGAATGATGCGTTTAGCTTCATCGTCGTCGTATCTACTATCGTTRTGTTTCGAGCTGGAGAACTGCTTGTACTTGATCCATTTCTTCGAACTGTAGTAGTGTTTGACAATAGAACGAATCGAGCGGTGGCATAGCTGAAAAGATATTTGAAGCTTATACAAGAGGACCTAGAAACTCACGCCGCTATGAATCGACGAGAAGTTCTTTCCAAAGTTACTGAAGCATCGTTCGAAAATCAGACTTTCTTCTTCTGACCAAGTTTCGTTGATTTCCGGACGAGTAGAGATCAGCTTATAGGCTTCATCGTAATTGAATTTTTTGAACTTTAGAAGGAAGAGAACGGCTTCAGTTGGAATCAAAAATCGAGCTGATGTTTCGGTGACCCAATTCCTCAGCTTCTCCTTTTCTAGGGTTTCATTTGAAGCCTCCCAAATGAGCACTTCCTCGGTGTCTGGACCATCCATGTAGTTGAGATCATTGAAGTCTTCAACGATTTTCGCTTGATACTCGGGTCCCACGTTGATCTCCTTATTCACATTTGATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>203 171 67 64 58 54 50 49 42 41 29 27 22 18 12 11 11 11 10 9 8 7 7 5 4 4 2 2 2</canonical_bands>
                <polymorphic_bands>203 171 118 67 58 50 49 42 41 29 27 22 18 12 11 11 11 10 9 8 7 7 5 4 4 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACACACCCAAAAATATCTCAAC</pcr_primer_p1>
		<pcr_primer_p2>TCCTCTTGTATAAGCTTCAAATATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACACACCCAAAAATATCTCAACCTCCATGTTCTCCGCTCGCTGACCACAATTTTCACACATGTCCACAAAAAATGATGCGGGCGGAATGATGCGTTTAGCTTCATCGTCGTCGTATCTACTATCGTTGTGTTTCGAGCTGGAGAACTGCTTGTACTTGATCCATTTCTTCGAACTGTAGTAGTGTTTGACAATAGAACGAATCGAGCGGTGGCATAGCTGAAAAGATATTTGAAGCTTATACAAGAGGA</canonical_amplicon>
		<polymorphic_amplicon>ACACACCCAAAAATATCTCAACCTCCATGTTCTCCGCTCGCTGACCACAATTTTCACACATGTCCACAAAAAATGATGCGGGCGGAATGATGCGTTTAGCTTCATCGTCGTCGTATCTACTATCGTTRTGTTTCGAGCTGGAGAACTGCTTGTACTTGATCCATTTCTTCGAACTGTAGTAGTGTTTGACAATAGAACGAATCGAGCGGTGGCATAGCTGAAAAGATATTTGAAGCTTATACAAGAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11850</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>643176</contig_pos>
        <strand>+</strand>
        <context>ACGGTAACAA[A/T]TTTCCGAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAACTTAAAAACTCTTTCTCTAATAGAATTAGAAAAAAATACGGTAACAA</left_flank>
        <right_flank>TTTCCGAGTTTCTTGAAAACGAAACGTCTGAATCGACAACTTTCTGAATT</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATTTGCACTTTCAAACTTTTTCGAGCAATGGATAAACTTTTCTAAGCAACAACGAAACTATTCTAAGCCGTTTATAAACTTTTTCAGCCGTGGCTAATCGGGCACCTTTTTTAATTTAATCGTGGCTTGTTTATGGCTCAGAAAGGTTTTCCGAACTACCTGAGCAGTTAGTACATTTGAACTCCCAAGAATTTTGAGGATGCAGATTCAAAATTTTCATAAAATTTTGCTATAGAAACTTTCTAAAAATCAGCAAATTTGTAGGACCAAAATAACGAATTTTGCTAAAATGTCGATTTTTTTGATTGCTGAAAAATTTCGAAATTTTTTTCAATATCAGGCTCCTAGGACCATTTTGATTTTCTCCATTGCCATGGCGTTTTCGAGTTCCTCAGAGATTGTGTCTTAAATATATTTTTTCAGCTTAAAACCAGAAACTCTTTATTAAAACTTAAAAACTCTTTCTCTAATAGAATTAGAAAAAAATACGGTAACAAATTTCCGAGTTTCTTGAAAACGAAACGTCTGAATCGACAACTTTCTGAATTTCTAATATGTATCTAAAAAGTTCATACCGCTGGCCTCTTTTTTTCAGTGATTTTTGTTTTTTTTCCTTTATAAATATTTCGGTTTTCTCATCATGTTTGTTTTCAAATCATTCTCTAAAGCCTAAATTATTCGTATCTTCTTGAACCCTTCACTATTTGTTCAGGAGCGCTCTCACGTGAAGTTTGGGTGAAGCTGAGATGATGACCTGAAGGAAAATGAAAAAAAAACCGATTGTATTATTTTCGGTTTGACCCCTCTTTGAGAGTGGACAAGAGTGGGCTAATAAGCAGTTGGTGTTCATTTTTTGGAGCTGCTATTGAAGGAGAAGAAATAAAGATGCGACACAAAATATTTTTCTTTGTTGTCCGTTTTTCAGTAGTTTTTTCGATTTTTTATTTAGAAGCAATAGTAGGATTTTCCCAGGTGACAAGACAGATATTTTATCATTA</canonical>
            <polymorphic>TTATTTGCACTTTCAAACTTTTTCGAGCAATGGATAAACTTTTCTAAGCAACAACGAAACTATTCTAAGCCGTTTATAAACTTTTTCAGCCGTGGCTAATCGGGCACCTTTTTTAATTTAATCGTGGCTTGTTTATGGCTCAGAAAGGTTTTCCGAACTACCTGAGCAGTTAGTACATTTGAACTCCCAAGAATTTTGAGGATGCAGATTCAAAATTTTCATAAAATTTTGCTATAGAAACTTTCTAAAAATCAGCAAATTTGTAGGACCAAAATAACGAATTTTGCTAAAATGTCGATTTTTTTGATTGCTGAAAAATTTCGAAATTTTTTTCAATATCAGGCTCCTAGGACCATTTTGATTTTCTCCATTGCCATGGCGTTTTCGAGTTCCTCAGAGATTGTGTCTTAAATATATTTTTTCAGCTTAAAACCAGAAACTCTTTATTAAAACTTAAAAACTCTTTCTCTAATAGAATTAGAAAAAAATACGGTAACAAWTTTCCGAGTTTCTTGAAAACGAAACGTCTGAATCGACAACTTTCTGAATTTCTAATATGTATCTAAAAAGTTCATACCGCTGGCCTCTTTTTTTCAGTGATTTTTGTTTTTTTTCCTTTATAAATATTTCGGTTTTCTCATCATGTTTGTTTTCAAATCATTCTCTAAAGCCTAAATTATTCGTATCTTCTTGAACCCTTCACTATTTGTTCAGGAGCGCTCTCACGTGAAGTTTGGGTGAAGCTGAGATGATGACCTGAAGGAAAATGAAAAAAAAACCGATTGTATTATTTTCGGTTTGACCCCTCTTTGAGAGTGGACAAGAGTGGGCTAATAAGCAGTTGGTGTTCATTTTTTGGAGCTGCTATTGAAGGAGAAGAAATAAAGATGCGACACAAAATATTTTTCTTTGTTGTCCGTTTTTCAGTAGTTTTTTCGATTTTTTATTTAGAAGCAATAGTAGGATTTTCCCAGGTGACAAGACAGATATTTTATCATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>454 191 174 48 37 33 22 22 11 8</canonical_bands>
                <polymorphic_bands>454 222 191 37 33 22 22 11 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>326 151 128 114 77 48 37 33 23 22 22 11 8</canonical_bands>
                <polymorphic_bands>326 151 128 114 77 71 37 33 22 22 11 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTAAAACCAGAAACTCTTTATT</pcr_primer_p1>
		<pcr_primer_p2>TAGGCTTTAGAGAATGATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTTAAAACCAGAAACTCTTTATTAAAACTTAAAAACTCTTTCTCTAATAGAATTAGAAAAAAATACGGTAACAAATTTCCGAGTTTCTTGAAAACGAAACGTCTGAATCGACAACTTTCTGAATTTCTAATATGTATCTAAAAAGTTCATACCGCTGGCCTCTTTTTTTCAGTGATTTTTGTTTTTTTTCCTTTATAAATATTTCGGTTTTCTCATCATGTTTGTTTTCAAATCATTCTCTAAAGCCTA</canonical_amplicon>
		<polymorphic_amplicon>GCTTAAAACCAGAAACTCTTTATTAAAACTTAAAAACTCTTTCTCTAATAGAATTAGAAAAAAATACGGTAACAAWTTTCCGAGTTTCTTGAAAACGAAACGTCTGAATCGACAACTTTCTGAATTTCTAATATGTATCTAAAAAGTTCATACCGCTGGCCTCTTTTTTTCAGTGATTTTTGTTTTTTTTCCTTTATAAATATTTCGGTTTTCTCATCATGTTTGTTTTCAAATCATTCTCTAAAGCCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11851</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>643258</contig_pos>
        <strand>+</strand>
        <context>TCATACCGCT[G/T]GCCTCTTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATCGACAACTTTCTGAATTTCTAATATGTATCTAAAAAGTTCATACCGCT</left_flank>
        <right_flank>GCCTCTTTTTTTCAGTGATTTTTGTTTTTTTTCCTTTATAAATATTTCGG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCAGCCGTGGCTAATCGGGCACCTTTTTTAATTTAATCGTGGCTTGTTTATGGCTCAGAAAGGTTTTCCGAACTACCTGAGCAGTTAGTACATTTGAACTCCCAAGAATTTTGAGGATGCAGATTCAAAATTTTCATAAAATTTTGCTATAGAAACTTTCTAAAAATCAGCAAATTTGTAGGACCAAAATAACGAATTTTGCTAAAATGTCGATTTTTTTGATTGCTGAAAAATTTCGAAATTTTTTTCAATATCAGGCTCCTAGGACCATTTTGATTTTCTCCATTGCCATGGCGTTTTCGAGTTCCTCAGAGATTGTGTCTTAAATATATTTTTTCAGCTTAAAACCAGAAACTCTTTATTAAAACTTAAAAACTCTTTCTCTAATAGAATTAGAAAAAAATACGGTAACAAATTTCCGAGTTTCTTGAAAACGAAACGTCTGAATCGACAACTTTCTGAATTTCTAATATGTATCTAAAAAGTTCATACCGCTGGCCTCTTTTTTTCAGTGATTTTTGTTTTTTTTCCTTTATAAATATTTCGGTTTTCTCATCATGTTTGTTTTCAAATCATTCTCTAAAGCCTAAATTATTCGTATCTTCTTGAACCCTTCACTATTTGTTCAGGAGCGCTCTCACGTGAAGTTTGGGTGAAGCTGAGATGATGACCTGAAGGAAAATGAAAAAAAAACCGATTGTATTATTTTCGGTTTGACCCCTCTTTGAGAGTGGACAAGAGTGGGCTAATAAGCAGTTGGTGTTCATTTTTTGGAGCTGCTATTGAAGGAGAAGAAATAAAGATGCGACACAAAATATTTTTCTTTGTTGTCCGTTTTTCAGTAGTTTTTTCGATTTTTTATTTAGAAGCAATAGTAGGATTTTCCCAGGTGACAAGACAGATATTTTATCATTAGAGCTAGAGATGTGAAGTTTGTATTATGTTAGTATTTCACTAATTTTGTATTATTGTCGGAATTATAAAACTGTCACCTCAG</canonical>
            <polymorphic>TTTTCAGCCGTGGCTAATCGGGCACCTTTTTTAATTTAATCGTGGCTTGTTTATGGCTCAGAAAGGTTTTCCGAACTACCTGAGCAGTTAGTACATTTGAACTCCCAAGAATTTTGAGGATGCAGATTCAAAATTTTCATAAAATTTTGCTATAGAAACTTTCTAAAAATCAGCAAATTTGTAGGACCAAAATAACGAATTTTGCTAAAATGTCGATTTTTTTGATTGCTGAAAAATTTCGAAATTTTTTTCAATATCAGGCTCCTAGGACCATTTTGATTTTCTCCATTGCCATGGCGTTTTCGAGTTCCTCAGAGATTGTGTCTTAAATATATTTTTTCAGCTTAAAACCAGAAACTCTTTATTAAAACTTAAAAACTCTTTCTCTAATAGAATTAGAAAAAAATACGGTAACAAATTTCCGAGTTTCTTGAAAACGAAACGTCTGAATCGACAACTTTCTGAATTTCTAATATGTATCTAAAAAGTTCATACCGCTKGCCTCTTTTTTTCAGTGATTTTTGTTTTTTTTCCTTTATAAATATTTCGGTTTTCTCATCATGTTTGTTTTCAAATCATTCTCTAAAGCCTAAATTATTCGTATCTTCTTGAACCCTTCACTATTTGTTCAGGAGCGCTCTCACGTGAAGTTTGGGTGAAGCTGAGATGATGACCTGAAGGAAAATGAAAAAAAAACCGATTGTATTATTTTCGGTTTGACCCCTCTTTGAGAGTGGACAAGAGTGGGCTAATAAGCAGTTGGTGTTCATTTTTTGGAGCTGCTATTGAAGGAGAAGAAATAAAGATGCGACACAAAATATTTTTCTTTGTTGTCCGTTTTTCAGTAGTTTTTTCGATTTTTTATTTAGAAGCAATAGTAGGATTTTCCCAGGTGACAAGACAGATATTTTATCATTAGAGCTAGAGATGTGAAGTTTGTATTATGTTAGTATTTCACTAATTTTGTATTATTGTCGGAATTATAAAACTGTCACCTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>205 158 142 87 87 82 79 73 32 31 11 7 6</canonical_bands>
                <polymorphic_bands>245 205 142 87 82 79 73 32 31 11 7 6</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTAAAACCAGAAACTCTTTATT</pcr_primer_p1>
		<pcr_primer_p2>TAGGCTTTAGAGAATGATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTTAAAACCAGAAACTCTTTATTAAAACTTAAAAACTCTTTCTCTAATAGAATTAGAAAAAAATACGGTAACAAATTTCCGAGTTTCTTGAAAACGAAACGTCTGAATCGACAACTTTCTGAATTTCTAATATGTATCTAAAAAGTTCATACCGCTGGCCTCTTTTTTTCAGTGATTTTTGTTTTTTTTCCTTTATAAATATTTCGGTTTTCTCATCATGTTTGTTTTCAAATCATTCTCTAAAGCCTA</canonical_amplicon>
		<polymorphic_amplicon>GCTTAAAACCAGAAACTCTTTATTAAAACTTAAAAACTCTTTCTCTAATAGAATTAGAAAAAAATACGGTAACAAATTTCCGAGTTTCTTGAAAACGAAACGTCTGAATCGACAACTTTCTGAATTTCTAATATGTATCTAAAAAGTTCATACCGCTKGCCTCTTTTTTTCAGTGATTTTTGTTTTTTTTCCTTTATAAATATTTCGGTTTTCTCATCATGTTTGTTTTCAAATCATTCTCTAAAGCCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11852</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>643911</contig_pos>
        <strand>+</strand>
        <context>AAACTTAGTG[A/T]TAGTATTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTG</left_flank>
        <right_flank>TAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGTGAAGCTGAGATGATGACCTGAAGGAAAATGAAAAAAAAACCGATTGTATTATTTTCGGTTTGACCCCTCTTTGAGAGTGGACAAGAGTGGGCTAATAAGCAGTTGGTGTTCATTTTTTGGAGCTGCTATTGAAGGAGAAGAAATAAAGATGCGACACAAAATATTTTTCTTTGTTGTCCGTTTTTCAGTAGTTTTTTCGATTTTTTATTTAGAAGCAATAGTAGGATTTTCCCAGGTGACAAGACAGATATTTTATCATTAGAGCTAGAGATGTGAAGTTTGTATTATGTTAGTATTTCACTAATTTTGTATTATTGTCGGAATTATAAAACTGTCACCTCAGTGTATGCAACTTCAGTGAAAAAATCTGATTTTTGTACGGATTCTGCATACACCGAGGTGACAGTTTTATAATTCCGGCAATGTGTTAGTATGTTAGTATTATGTTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATT</canonical>
            <polymorphic>GGGTGAAGCTGAGATGATGACCTGAAGGAAAATGAAAAAAAAACCGATTGTATTATTTTCGGTTTGACCCCTCTTTGAGAGTGGACAAGAGTGGGCTAATAAGCAGTTGGTGTTCATTTTTTGGAGCTGCTATTGAAGGAGAAGAAATAAAGATGCGACACAAAATATTTTTCTTTGTTGTCCGTTTTTCAGTAGTTTTTTCGATTTTTTATTTAGAAGCAATAGTAGGATTTTCCCAGGTGACAAGACAGATATTTTATCATTAGAGCTAGAGATGTGAAGTTTGTATTATGTTAGTATTTCACTAATTTTGTATTATTGTCGGAATTATAAAACTGTCACCTCAGTGTATGCAACTTCAGTGAAAAAATCTGATTTTTGTACGGATTCTGCATACACCGAGGTGACAGTTTTATAATTCCGGCAATGTGTTAGTATGTTAGTATTATGTTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGWTAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCTAGAGATGTGAAGTTTGTATT</pcr_primer_p1>
		<pcr_primer_p2>TCAGAACAAAATCGGAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>524</pcr_amplicon_size>
		<canonical_amplicon>GAGCTAGAGATGTGAAGTTTGTATTATGTTAGTATTTCACTAATTTTGTATTATTGTCGGAATTATAAAACTGTCACCTCAGTGTATGCAACTTCAGTGAAAAAATCTGATTTTTGTACGGATTCTGCATACACCGAGGTGACAGTTTTATAATTCCGGCAATGTGTTAGTATGTTAGTATTATGTTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGA</canonical_amplicon>
		<polymorphic_amplicon>GAGCTAGAGATGTGAAGTTTGTATTATGTTAGTATTTCACTAATTTTGTATTATTGTCGGAATTATAAAACTGTCACCTCAGTGTATGCAACTTCAGTGAAAAAATCTGATTTTTGTACGGATTCTGCATACACCGAGGTGACAGTTTTATAATTCCGGCAATGTGTTAGTATGTTAGTATTATGTTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGWTAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11853</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>644331</contig_pos>
        <strand>+</strand>
        <context>TTACCATAMT[C/T]GTCAAAGTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAAT</left_flank>
        <right_flank>GTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGGCAATGTGTTAGTATGTTAGTATTATGTTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGCGATTTGAAAAATCTATTTTCAGAATTTTGTGAATTTCGCTTCGTAAAGTCAAAACGATTCAAAATCTCGAGGAAACGTTTTTTTTCATGTCCCGCCACCTTTAAAATTGCTTCCCCTATTTCTAGTACTTGCTCTGAACTTTCTATTATTTTGGTACGTAAAAATCGGAGCGATGGAAGAGAAACGCGGGTCGCCGTGGCCGAAGATCTCACAATGACAACTACCGTAACTCAGAAATAAGGTAATTTTCCGAATTTATTTTCTCGATGTTTCTGCTTTTGCAGCCAATCATCTTCCACAGCACTGATTTTTTCGAACCAGAATAGTAACATTCCCAATTAGTTTTCCATGTTTTCTCAACTTCCACAAAGCAATATATGTCACTTCCAGAAACTCA</canonical>
            <polymorphic>CCGGCAATGTGTTAGTATGTTAGTATTATGTTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATYGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGCGATTTGAAAAATCTATTTTCAGAATTTTGTGAATTTCGCTTCGTAAAGTCAAAACGATTCAAAATCTCGAGGAAACGTTTTTTTTCATGTCCCGCCACCTTTAAAATTGCTTCCCCTATTTCTAGTACTTGCTCTGAACTTTCTATTATTTTGGTACGTAAAAATCGGAGCGATGGAAGAGAAACGCGGGTCGCCGTGGCCGAAGATCTCACAATGACAACTACCGTAACTCAGAAATAAGGTAATTTTCCGAATTTATTTTCTCGATGTTTCTGCTTTTGCAGCCAATCATCTTCCACAGCACTGATTTTTTCGAACCAGAATAGTAACATTCCCAATTAGTTTTCCATGTTTTCTCAACTTCCACAAAGCAATATATGTCACTTCCAGAAACTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTTCTGAAAACCCGTATTA</pcr_primer_p1>
		<pcr_primer_p2>GCTTTTCATCGATTTTACACTTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGC</canonical_amplicon>
		<polymorphic_amplicon>TTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATYGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11854</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>644329</contig_pos>
        <strand>+</strand>
        <context>GATTACCATA[A/C]TYGTCAAAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATA</left_flank>
        <right_flank>TCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCGGCAATGTGTTAGTATGTTAGTATTATGTTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGCGATTTGAAAAATCTATTTTCAGAATTTTGTGAATTTCGCTTCGTAAAGTCAAAACGATTCAAAATCTCGAGGAAACGTTTTTTTTCATGTCCCGCCACCTTTAAAATTGCTTCCCCTATTTCTAGTACTTGCTCTGAACTTTCTATTATTTTGGTACGTAAAAATCGGAGCGATGGAAGAGAAACGCGGGTCGCCGTGGCCGAAGATCTCACAATGACAACTACCGTAACTCAGAAATAAGGTAATTTTCCGAATTTATTTTCTCGATGTTTCTGCTTTTGCAGCCAATCATCTTCCACAGCACTGATTTTTTCGAACCAGAATAGTAACATTCCCAATTAGTTTTCCATGTTTTCTCAACTTCCACAAAGCAATATATGTCACTTCCAGAAACT</canonical>
            <polymorphic>TTCCGGCAATGTGTTAGTATGTTAGTATTATGTTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAMTCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGCGATTTGAAAAATCTATTTTCAGAATTTTGTGAATTTCGCTTCGTAAAGTCAAAACGATTCAAAATCTCGAGGAAACGTTTTTTTTCATGTCCCGCCACCTTTAAAATTGCTTCCCCTATTTCTAGTACTTGCTCTGAACTTTCTATTATTTTGGTACGTAAAAATCGGAGCGATGGAAGAGAAACGCGGGTCGCCGTGGCCGAAGATCTCACAATGACAACTACCGTAACTCAGAAATAAGGTAATTTTCCGAATTTATTTTCTCGATGTTTCTGCTTTTGCAGCCAATCATCTTCCACAGCACTGATTTTTTCGAACCAGAATAGTAACATTCCCAATTAGTTTTCCATGTTTTCTCAACTTCCACAAAGCAATATATGTCACTTCCAGAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTTCTGAAAACCCGTATTA</pcr_primer_p1>
		<pcr_primer_p2>GCTTTTCATCGATTTTACACTTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGC</canonical_amplicon>
		<polymorphic_amplicon>TTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAMTCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11855</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>644317</contig_pos>
        <strand>+</strand>
        <context>AATATTTTCG[C/T]CGATTACCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCG</left_flank>
        <right_flank>CGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGTTTTATAATTCCGGCAATGTGTTAGTATGTTAGTATTATGTTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGCGATTTGAAAAATCTATTTTCAGAATTTTGTGAATTTCGCTTCGTAAAGTCAAAACGATTCAAAATCTCGAGGAAACGTTTTTTTTCATGTCCCGCCACCTTTAAAATTGCTTCCCCTATTTCTAGTACTTGCTCTGAACTTTCTATTATTTTGGTACGTAAAAATCGGAGCGATGGAAGAGAAACGCGGGTCGCCGTGGCCGAAGATCTCACAATGACAACTACCGTAACTCAGAAATAAGGTAATTTTCCGAATTTATTTTCTCGATGTTTCTGCTTTTGCAGCCAATCATCTTCCACAGCACTGATTTTTTCGAACCAGAATAGTAACATTCCCAATTAGTTTTCCATGTTTTCTCAACTTCCACAAAGCAATATATGTCA</canonical>
            <polymorphic>ACAGTTTTATAATTCCGGCAATGTGTTAGTATGTTAGTATTATGTTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGYCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGCGATTTGAAAAATCTATTTTCAGAATTTTGTGAATTTCGCTTCGTAAAGTCAAAACGATTCAAAATCTCGAGGAAACGTTTTTTTTCATGTCCCGCCACCTTTAAAATTGCTTCCCCTATTTCTAGTACTTGCTCTGAACTTTCTATTATTTTGGTACGTAAAAATCGGAGCGATGGAAGAGAAACGCGGGTCGCCGTGGCCGAAGATCTCACAATGACAACTACCGTAACTCAGAAATAAGGTAATTTTCCGAATTTATTTTCTCGATGTTTCTGCTTTTGCAGCCAATCATCTTCCACAGCACTGATTTTTTCGAACCAGAATAGTAACATTCCCAATTAGTTTTCCATGTTTTCTCAACTTCCACAAAGCAATATATGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>230 197 123 100 78 69 66 49 48 40</canonical_bands>
                <polymorphic_bands>230 197 166 123 78 69 49 48 40</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>498 282 220</canonical_bands>
                <polymorphic_bands>718 282</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTTCTGAAAACCCGTATTA</pcr_primer_p1>
		<pcr_primer_p2>GCTTTTCATCGATTTTACACTTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGC</canonical_amplicon>
		<polymorphic_amplicon>TTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGYCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11856</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>644288</contig_pos>
        <strand>+</strand>
        <context>TCTGAAAATC[A/G]TGAGTTCTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATC</left_flank>
        <right_flank>TGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGTACGGATTCTGCATACACCGAGGTGACAGTTTTATAATTCCGGCAATGTGTTAGTATGTTAGTATTATGTTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGCGATTTGAAAAATCTATTTTCAGAATTTTGTGAATTTCGCTTCGTAAAGTCAAAACGATTCAAAATCTCGAGGAAACGTTTTTTTTCATGTCCCGCCACCTTTAAAATTGCTTCCCCTATTTCTAGTACTTGCTCTGAACTTTCTATTATTTTGGTACGTAAAAATCGGAGCGATGGAAGAGAAACGCGGGTCGCCGTGGCCGAAGATCTCACAATGACAACTACCGTAACTCAGAAATAAGGTAATTTTCCGAATTTATTTTCTCGATGTTTCTGCTTTTGCAGCCAATCATCTTCCACAGCACTGATTTTTTCGAACCAGAATAGTAACATTCCCAATTAGTTTTCCATGTTT</canonical>
            <polymorphic>TTTGTACGGATTCTGCATACACCGAGGTGACAGTTTTATAATTCCGGCAATGTGTTAGTATGTTAGTATTATGTTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCRTGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGCGATTTGAAAAATCTATTTTCAGAATTTTGTGAATTTCGCTTCGTAAAGTCAAAACGATTCAAAATCTCGAGGAAACGTTTTTTTTCATGTCCCGCCACCTTTAAAATTGCTTCCCCTATTTCTAGTACTTGCTCTGAACTTTCTATTATTTTGGTACGTAAAAATCGGAGCGATGGAAGAGAAACGCGGGTCGCCGTGGCCGAAGATCTCACAATGACAACTACCGTAACTCAGAAATAAGGTAATTTTCCGAATTTATTTTCTCGATGTTTCTGCTTTTGCAGCCAATCATCTTCCACAGCACTGATTTTTTCGAACCAGAATAGTAACATTCCCAATTAGTTTTCCATGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>358 262 233 141 6</canonical_bands>
                <polymorphic_bands>591 262 141 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTTCTGAAAACCCGTATTA</pcr_primer_p1>
		<pcr_primer_p2>GCTTTTCATCGATTTTACACTTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGC</canonical_amplicon>
		<polymorphic_amplicon>TTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCRTGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11857</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>644229</contig_pos>
        <strand>+</strand>
        <context>GAAATTCTAA[A/G]TTTCAAATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAA</left_flank>
        <right_flank>TTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTCGGAATTATAAAACTGTCACCTCAGTGTATGCAACTTCAGTGAAAAAATCTGATTTTTGTACGGATTCTGCATACACCGAGGTGACAGTTTTATAATTCCGGCAATGTGTTAGTATGTTAGTATTATGTTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGCGATTTGAAAAATCTATTTTCAGAATTTTGTGAATTTCGCTTCGTAAAGTCAAAACGATTCAAAATCTCGAGGAAACGTTTTTTTTCATGTCCCGCCACCTTTAAAATTGCTTCCCCTATTTCTAGTACTTGCTCTGAACTTTCTATTATTTTGGTACGTAAAAATCGGAGCGATGGAAGAGAAACGCGGGTCGCCGTGGCCGAAGATCTCACAATGACAACTACCGTAACTCAGAAATAAGGTAATTTTCCGAATTTATTTTCTCGATGTTTCTGCTTTTGCAGCCAATCATCTT</canonical>
            <polymorphic>TTGTCGGAATTATAAAACTGTCACCTCAGTGTATGCAACTTCAGTGAAAAAATCTGATTTTTGTACGGATTCTGCATACACCGAGGTGACAGTTTTATAATTCCGGCAATGTGTTAGTATGTTAGTATTATGTTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAARTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGCGATTTGAAAAATCTATTTTCAGAATTTTGTGAATTTCGCTTCGTAAAGTCAAAACGATTCAAAATCTCGAGGAAACGTTTTTTTTCATGTCCCGCCACCTTTAAAATTGCTTCCCCTATTTCTAGTACTTGCTCTGAACTTTCTATTATTTTGGTACGTAAAAATCGGAGCGATGGAAGAGAAACGCGGGTCGCCGTGGCCGAAGATCTCACAATGACAACTACCGTAACTCAGAAATAAGGTAATTTTCCGAATTTATTTTCTCGATGTTTCTGCTTTTGCAGCCAATCATCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>402 210 150 111 65 37 25</canonical_bands>
                <polymorphic_bands>402 247 150 111 65 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCTTCCGATTTTGTTCTG</pcr_primer_p1>
		<pcr_primer_p2>GCTTTTCATCGATTTTACACTTA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>GATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGC</canonical_amplicon>
		<polymorphic_amplicon>GATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAARTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11858</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>644213</contig_pos>
        <strand>+</strand>
        <context>ACCCGTATTA[A/C]TTTTCGAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTA</left_flank>
        <right_flank>TTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACTAATTTTGTATTATTGTCGGAATTATAAAACTGTCACCTCAGTGTATGCAACTTCAGTGAAAAAATCTGATTTTTGTACGGATTCTGCATACACCGAGGTGACAGTTTTATAATTCCGGCAATGTGTTAGTATGTTAGTATTATGTTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGCGATTTGAAAAATCTATTTTCAGAATTTTGTGAATTTCGCTTCGTAAAGTCAAAACGATTCAAAATCTCGAGGAAACGTTTTTTTTCATGTCCCGCCACCTTTAAAATTGCTTCCCCTATTTCTAGTACTTGCTCTGAACTTTCTATTATTTTGGTACGTAAAAATCGGAGCGATGGAAGAGAAACGCGGGTCGCCGTGGCCGAAGATCTCACAATGACAACTACCGTAACTCAGAAATAAGGTAATTTTCCGAATTTATTTTCTCGATGTTTCTGCTTT</canonical>
            <polymorphic>CACTAATTTTGTATTATTGTCGGAATTATAAAACTGTCACCTCAGTGTATGCAACTTCAGTGAAAAAATCTGATTTTTGTACGGATTCTGCATACACCGAGGTGACAGTTTTATAATTCCGGCAATGTGTTAGTATGTTAGTATTATGTTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAMTTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGCGATTTGAAAAATCTATTTTCAGAATTTTGTGAATTTCGCTTCGTAAAGTCAAAACGATTCAAAATCTCGAGGAAACGTTTTTTTTCATGTCCCGCCACCTTTAAAATTGCTTCCCCTATTTCTAGTACTTGCTCTGAACTTTCTATTATTTTGGTACGTAAAAATCGGAGCGATGGAAGAGAAACGCGGGTCGCCGTGGCCGAAGATCTCACAATGACAACTACCGTAACTCAGAAATAAGGTAATTTTCCGAATTTATTTTCTCGATGTTTCTGCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>497 186 178 124 15</canonical_bands>
                <polymorphic_bands>683 178 124 15</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>209 199 175 139 91 73 27 19 19 18 9 9 9 4</canonical_bands>
                <polymorphic_bands>209 199 184 139 91 73 27 19 19 18 9 9 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGTATTTGTTGGTTTTCTTTTTC</pcr_primer_p1>
		<pcr_primer_p2>AATCTTAGAATTTTAGACCGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>408</pcr_amplicon_size>
		<canonical_amplicon>TTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATT</canonical_amplicon>
		<polymorphic_amplicon>TTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAMTTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11863</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>691873</contig_pos>
        <strand>+</strand>
        <context>ATTTCTGTTG[A/T]CTTCTGGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAAAAAAGCTGCTGAAGACTTAATCTGATTACTCGGGAAATTTCTGTTG</left_flank>
        <right_flank>CTTCTGGAAAGTGCGAGAATATTAAATTATTGGGGTGTGCAGGGGACAAC</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAAATTCGAAAATTAAAAAATGCAAAAGTAGGAAGATGGCCTGGTCTGGCAGGAAATTAGAAAAAATGGGAACAGAGTTGCCAAAAGAAGAAGACCAGAAGCAAAATTTAAGGGAGAGAGATAGGGAAAAGAAGAGTCAACATAGAAGGGATTGGATTAAAGGAAACGTTTAGTTTAGCCAGTAGTCACACACACTGAATTTCACATACACGATTTCATTCGTTAGTCACGGATAAGCATCGAAAAGCACAAGTGACTTTGTCTTCTTGAGAAAAGAAGTCGTATGTAAATTTGCTTTTTTTTGTTCGAAAAGGAAATGGAATGGAGGGGCGAAAAAAGGATAATACTGGGGTGGTCCAAATGTAAATAAGCAGGTGGCAGATGGTGAGGGACAAAATATGAATGCACTTCTTGAGAGAGAACGGCGGAGAAGACGTCACGAGATGGGGAAAAAAGCTGCTGAAGACTTAATCTGATTACTCGGGAAATTTCTGTTGACTTCTGGAAAGTGCGAGAATATTAAATTATTGGGGTGTGCAGGGGACAACAGTGTTACGTGATTAATGAAAATTTCAAAATTATCTGGTTCAAAAAGCAAGTCAAAACAATTCGTAGGAATTTGTGTTTCTGGATAGATAAATATCAAGTTTACAAAAATTTCGAAAATTTTGTTTTAGATTTTAGAACCAAAATGATAATTATAAACGCTGAGAGTATTTGAAAGCACTCTTAGCACGCCCTCTCCAAAACAGTCAACTTTGAGCTCATATATCGCAGTTCCTGTAAAAGATATCAAAAAGTGGTCCACTGATAAAATGTTGTTGAAATTATGAAAAACATTTTGTTACCACTTTTCGATATTTTTCACAGGAACCAAGATAAGTAGGTTCAAAATTGAAAGTCAGGGGGGTCATTCTATCAGAGTGTTTACGGTAGGTTTCAAATTCAAAAAGAGCATTATAAACCCAAAGAGTATTTGCAAGCTTTGGATGTAATAA</canonical>
            <polymorphic>AGGAAATTCGAAAATTAAAAAATGCAAAAGTAGGAAGATGGCCTGGTCTGGCAGGAAATTAGAAAAAATGGGAACAGAGTTGCCAAAAGAAGAAGACCAGAAGCAAAATTTAAGGGAGAGAGATAGGGAAAAGAAGAGTCAACATAGAAGGGATTGGATTAAAGGAAACGTTTAGTTTAGCCAGTAGTCACACACACTGAATTTCACATACACGATTTCATTCGTTAGTCACGGATAAGCATCGAAAAGCACAAGTGACTTTGTCTTCTTGAGAAAAGAAGTCGTATGTAAATTTGCTTTTTTTTGTTCGAAAAGGAAATGGAATGGAGGGGCGAAAAAAGGATAATACTGGGGTGGTCCAAATGTAAATAAGCAGGTGGCAGATGGTGAGGGACAAAATATGAATGCACTTCTTGAGAGAGAACGGCGGAGAAGACGTCACGAGATGGGGAAAAAAGCTGCTGAAGACTTAATCTGATTACTCGGGAAATTTCTGTTGWCTTCTGGAAAGTGCGAGAATATTAAATTATTGGGGTGTGCAGGGGACAACAGTGTTACGTGATTAATGAAAATTTCAAAATTATCTGGTTCAAAAAGCAAGTCAAAACAATTCGTAGGAATTTGTGTTTCTGGATAGATAAATATCAAGTTTACAAAAATTTCGAAAATTTTGTTTTAGATTTTAGAACCAAAATGATAATTATAAACGCTGAGAGTATTTGAAAGCACTCTTAGCACGCCCTCTCCAAAACAGTCAACTTTGAGCTCATATATCGCAGTTCCTGTAAAAGATATCAAAAAGTGGTCCACTGATAAAATGTTGTTGAAATTATGAAAAACATTTTGTTACCACTTTTCGATATTTTTCACAGGAACCAAGATAAGTAGGTTCAAAATTGAAAGTCAGGGGGGTCATTCTATCAGAGTGTTTACGGTAGGTTTCAAATTCAAAAAGAGCATTATAAACCCAAAGAGTATTTGCAAGCTTTGGATGTAATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>358 258 244 140</canonical_bands>
                <polymorphic_bands>616 244 140</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>358 153 140 123 105 70 51</canonical_bands>
                <polymorphic_bands>511 140 123 105 70 51</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCCAAATGTAAATAAGCAGGT</pcr_primer_p1>
		<pcr_primer_p2>ACTTGCTTTTTGAACCAGATAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTCCAAATGTAAATAAGCAGGTGGCAGATGGTGAGGGACAAAATATGAATGCACTTCTTGAGAGAGAACGGCGGAGAAGACGTCACGAGATGGGGAAAAAAGCTGCTGAAGACTTAATCTGATTACTCGGGAAATTTCTGTTGACTTCTGGAAAGTGCGAGAATATTAAATTATTGGGGTGTGCAGGGGACAACAGTGTTACGTGATTAATGAAAATTTCAAAATTATCTGGTTCAAAAAGCAAGT</canonical_amplicon>
		<polymorphic_amplicon>GTCCAAATGTAAATAAGCAGGTGGCAGATGGTGAGGGACAAAATATGAATGCACTTCTTGAGAGAGAACGGCGGAGAAGACGTCACGAGATGGGGAAAAAAGCTGCTGAAGACTTAATCTGATTACTCGGGAAATTTCTGTTGWCTTCTGGAAAGTGCGAGAATATTAAATTATTGGGGTGTGCAGGGGACAACAGTGTTACGTGATTAATGAAAATTTCAAAATTATCTGGTTCAAAAAGCAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11864</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>691777</contig_pos>
        <strand>+</strand>
        <context>ACAAAATATG[A/G]ATGCACTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGGTCCAAATGTAAATAAGCAGGTGGCAGATGGTGAGGGACAAAATATG</left_flank>
        <right_flank>ATGCACTTCTTGAGAGAGAACGGCGGAGAAGACGTCACGAGATGGGGAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCATCTTTGACGCGGAAGTTCGTAACCCATAGGAAGTACTAAACTGACACTCCCCAAGAAAAGGATCCAAGGAAAAACGAACTCATATGAAAACAGGAAATTCGAAAATTAAAAAATGCAAAAGTAGGAAGATGGCCTGGTCTGGCAGGAAATTAGAAAAAATGGGAACAGAGTTGCCAAAAGAAGAAGACCAGAAGCAAAATTTAAGGGAGAGAGATAGGGAAAAGAAGAGTCAACATAGAAGGGATTGGATTAAAGGAAACGTTTAGTTTAGCCAGTAGTCACACACACTGAATTTCACATACACGATTTCATTCGTTAGTCACGGATAAGCATCGAAAAGCACAAGTGACTTTGTCTTCTTGAGAAAAGAAGTCGTATGTAAATTTGCTTTTTTTTGTTCGAAAAGGAAATGGAATGGAGGGGCGAAAAAAGGATAATACTGGGGTGGTCCAAATGTAAATAAGCAGGTGGCAGATGGTGAGGGACAAAATATGAATGCACTTCTTGAGAGAGAACGGCGGAGAAGACGTCACGAGATGGGGAAAAAAGCTGCTGAAGACTTAATCTGATTACTCGGGAAATTTCTGTTGACTTCTGGAAAGTGCGAGAATATTAAATTATTGGGGTGTGCAGGGGACAACAGTGTTACGTGATTAATGAAAATTTCAAAATTATCTGGTTCAAAAAGCAAGTCAAAACAATTCGTAGGAATTTGTGTTTCTGGATAGATAAATATCAAGTTTACAAAAATTTCGAAAATTTTGTTTTAGATTTTAGAACCAAAATGATAATTATAAACGCTGAGAGTATTTGAAAGCACTCTTAGCACGCCCTCTCCAAAACAGTCAACTTTGAGCTCATATATCGCAGTTCCTGTAAAAGATATCAAAAAGTGGTCCACTGATAAAATGTTGTTGAAATTATGAAAAACATTTTGTTACCACTTTTCGATATTTTTCACAGGAACCAAGATAAGTAGGTTCAAAATTGAAAGT</canonical>
            <polymorphic>TTTCATCTTTGACGCGGAAGTTCGTAACCCATAGGAAGTACTAAACTGACACTCCCCAAGAAAAGGATCCAAGGAAAAACGAACTCATATGAAAACAGGAAATTCGAAAATTAAAAAATGCAAAAGTAGGAAGATGGCCTGGTCTGGCAGGAAATTAGAAAAAATGGGAACAGAGTTGCCAAAAGAAGAAGACCAGAAGCAAAATTTAAGGGAGAGAGATAGGGAAAAGAAGAGTCAACATAGAAGGGATTGGATTAAAGGAAACGTTTAGTTTAGCCAGTAGTCACACACACTGAATTTCACATACACGATTTCATTCGTTAGTCACGGATAAGCATCGAAAAGCACAAGTGACTTTGTCTTCTTGAGAAAAGAAGTCGTATGTAAATTTGCTTTTTTTTGTTCGAAAAGGAAATGGAATGGAGGGGCGAAAAAAGGATAATACTGGGGTGGTCCAAATGTAAATAAGCAGGTGGCAGATGGTGAGGGACAAAATATGRATGCACTTCTTGAGAGAGAACGGCGGAGAAGACGTCACGAGATGGGGAAAAAAGCTGCTGAAGACTTAATCTGATTACTCGGGAAATTTCTGTTGACTTCTGGAAAGTGCGAGAATATTAAATTATTGGGGTGTGCAGGGGACAACAGTGTTACGTGATTAATGAAAATTTCAAAATTATCTGGTTCAAAAAGCAAGTCAAAACAATTCGTAGGAATTTGTGTTTCTGGATAGATAAATATCAAGTTTACAAAAATTTCGAAAATTTTGTTTTAGATTTTAGAACCAAAATGATAATTATAAACGCTGAGAGTATTTGAAAGCACTCTTAGCACGCCCTCTCCAAAACAGTCAACTTTGAGCTCATATATCGCAGTTCCTGTAAAAGATATCAAAAAGTGGTCCACTGATAAAATGTTGTTGAAATTATGAAAAACATTTTGTTACCACTTTTCGATATTTTTCACAGGAACCAAGATAAGTAGGTTCAAAATTGAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAGTGACTTTGTCTTCTTGAG</pcr_primer_p1>
		<pcr_primer_p2>CAACAGAAATTTCCCGAGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAAGTGACTTTGTCTTCTTGAGAAAAGAAGTCGTATGTAAATTTGCTTTTTTTTGTTCGAAAAGGAAATGGAATGGAGGGGCGAAAAAAGGATAATACTGGGGTGGTCCAAATGTAAATAAGCAGGTGGCAGATGGTGAGGGACAAAATATGAATGCACTTCTTGAGAGAGAACGGCGGAGAAGACGTCACGAGATGGGGAAAAAAGCTGCTGAAGACTTAATCTGATTACTCGGGAAATTTCTGTTG</canonical_amplicon>
		<polymorphic_amplicon>ACAAGTGACTTTGTCTTCTTGAGAAAAGAAGTCGTATGTAAATTTGCTTTTTTTTGTTCGAAAAGGAAATGGAATGGAGGGGCGAAAAAAGGATAATACTGGGGTGGTCCAAATGTAAATAAGCAGGTGGCAGATGGTGAGGGACAAAATATGRATGCACTTCTTGAGAGAGAACGGCGGAGAAGACGTCACGAGATGGGGAAAAAAGCTGCTGAAGACTTAATCTGATTACTCGGGAAATTTCTGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11865</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>691511</contig_pos>
        <strand>+</strand>
        <context>GAAAAGAAGA[G/T]TCAACATAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGAAGAAGACCAGAAGCAAAATTTAAGGGAGAGAGATAGGGAAAAGAAGA</left_flank>
        <right_flank>TCAACATAGAAGGGATTGGATTAAAGGAAACGTTTAGTTTAGCCAGTAGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTCAACTTGCAAAAGTTAGACCACCACTTCAAAACAACCTGGAAAATACACCATGTGGATATCCCACCAATTCTAGGCCATCTCGCCATGGTGGCCTAGAAAACTCAGCTTGAGAAAGTTATGTCACAACTTCAAAATAACCAAAAAACGAAGGAAAAGCTTCCTGAGGACACCTATAGCCGAACCCTTGTCTGTTTCTAACCCAGTAGGAAAATTCGCCCCATTGATAAAAGGAGTCATTTTGACCCAATTCCCAAGATTGTTTTTCATCTTTGACGCGGAAGTTCGTAACCCATAGGAAGTACTAAACTGACACTCCCCAAGAAAAGGATCCAAGGAAAAACGAACTCATATGAAAACAGGAAATTCGAAAATTAAAAAATGCAAAAGTAGGAAGATGGCCTGGTCTGGCAGGAAATTAGAAAAAATGGGAACAGAGTTGCCAAAAGAAGAAGACCAGAAGCAAAATTTAAGGGAGAGAGATAGGGAAAAGAAGAGTCAACATAGAAGGGATTGGATTAAAGGAAACGTTTAGTTTAGCCAGTAGTCACACACACTGAATTTCACATACACGATTTCATTCGTTAGTCACGGATAAGCATCGAAAAGCACAAGTGACTTTGTCTTCTTGAGAAAAGAAGTCGTATGTAAATTTGCTTTTTTTTGTTCGAAAAGGAAATGGAATGGAGGGGCGAAAAAAGGATAATACTGGGGTGGTCCAAATGTAAATAAGCAGGTGGCAGATGGTGAGGGACAAAATATGAATGCACTTCTTGAGAGAGAACGGCGGAGAAGACGTCACGAGATGGGGAAAAAAGCTGCTGAAGACTTAATCTGATTACTCGGGAAATTTCTGTTGACTTCTGGAAAGTGCGAGAATATTAAATTATTGGGGTGTGCAGGGGACAACAGTGTTACGTGATTAATGAAAATTTCAAAATTATCTGGTTCAAAAAGCAAGTCAAAACAATTCGTAGGAATTTGTGTTTCTGGATAGA</canonical>
            <polymorphic>AGCTCAACTTGCAAAAGTTAGACCACCACTTCAAAACAACCTGGAAAATACACCATGTGGATATCCCACCAATTCTAGGCCATCTCGCCATGGTGGCCTAGAAAACTCAGCTTGAGAAAGTTATGTCACAACTTCAAAATAACCAAAAAACGAAGGAAAAGCTTCCTGAGGACACCTATAGCCGAACCCTTGTCTGTTTCTAACCCAGTAGGAAAATTCGCCCCATTGATAAAAGGAGTCATTTTGACCCAATTCCCAAGATTGTTTTTCATCTTTGACGCGGAAGTTCGTAACCCATAGGAAGTACTAAACTGACACTCCCCAAGAAAAGGATCCAAGGAAAAACGAACTCATATGAAAACAGGAAATTCGAAAATTAAAAAATGCAAAAGTAGGAAGATGGCCTGGTCTGGCAGGAAATTAGAAAAAATGGGAACAGAGTTGCCAAAAGAAGAAGACCAGAAGCAAAATTTAAGGGAGAGAGATAGGGAAAAGAAGAKTCAACATAGAAGGGATTGGATTAAAGGAAACGTTTAGTTTAGCCAGTAGTCACACACACTGAATTTCACATACACGATTTCATTCGTTAGTCACGGATAAGCATCGAAAAGCACAAGTGACTTTGTCTTCTTGAGAAAAGAAGTCGTATGTAAATTTGCTTTTTTTTGTTCGAAAAGGAAATGGAATGGAGGGGCGAAAAAAGGATAATACTGGGGTGGTCCAAATGTAAATAAGCAGGTGGCAGATGGTGAGGGACAAAATATGAATGCACTTCTTGAGAGAGAACGGCGGAGAAGACGTCACGAGATGGGGAAAAAAGCTGCTGAAGACTTAATCTGATTACTCGGGAAATTTCTGTTGACTTCTGGAAAGTGCGAGAATATTAAATTATTGGGGTGTGCAGGGGACAACAGTGTTACGTGATTAATGAAAATTTCAAAATTATCTGGTTCAAAAAGCAAGTCAAAACAATTCGTAGGAATTTGTGTTTCTGGATAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>502 358 140</canonical_bands>
                <polymorphic_bands>860 140</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 358 140</canonical_bands>
                <polymorphic_bands>860 140</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACGAACTCATATGAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>CTAACGAATGAAATCGTGTATGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAACGAACTCATATGAAAACAGGAAATTCGAAAATTAAAAAATGCAAAAGTAGGAAGATGGCCTGGTCTGGCAGGAAATTAGAAAAAATGGGAACAGAGTTGCCAAAAGAAGAAGACCAGAAGCAAAATTTAAGGGAGAGAGATAGGGAAAAGAAGAGTCAACATAGAAGGGATTGGATTAAAGGAAACGTTTAGTTTAGCCAGTAGTCACACACACTGAATTTCACATACACGATTTCATTCGTTAG</canonical_amplicon>
		<polymorphic_amplicon>AAAACGAACTCATATGAAAACAGGAAATTCGAAAATTAAAAAATGCAAAAGTAGGAAGATGGCCTGGTCTGGCAGGAAATTAGAAAAAATGGGAACAGAGTTGCCAAAAGAAGAAGACCAGAAGCAAAATTTAAGGGAGAGAGATAGGGAAAAGAAGAKTCAACATAGAAGGGATTGGATTAAAGGAAACGTTTAGTTTAGCCAGTAGTCACACACACTGAATTTCACATACACGATTTCATTCGTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11866</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>691485</contig_pos>
        <strand>+</strand>
        <context>AGCAAAATTT[A/T]AGGGAGAGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAAAATGGGAACAGAGTTGCCAAAAGAAGAAGACCAGAAGCAAAATTT</left_flank>
        <right_flank>AGGGAGAGAGATAGGGAAAAGAAGAGTCAACATAGAAGGGATTGGATTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGTAACTCACCACGGTGGCCTAGAAAGCTCAACTTGCAAAAGTTAGACCACCACTTCAAAACAACCTGGAAAATACACCATGTGGATATCCCACCAATTCTAGGCCATCTCGCCATGGTGGCCTAGAAAACTCAGCTTGAGAAAGTTATGTCACAACTTCAAAATAACCAAAAAACGAAGGAAAAGCTTCCTGAGGACACCTATAGCCGAACCCTTGTCTGTTTCTAACCCAGTAGGAAAATTCGCCCCATTGATAAAAGGAGTCATTTTGACCCAATTCCCAAGATTGTTTTTCATCTTTGACGCGGAAGTTCGTAACCCATAGGAAGTACTAAACTGACACTCCCCAAGAAAAGGATCCAAGGAAAAACGAACTCATATGAAAACAGGAAATTCGAAAATTAAAAAATGCAAAAGTAGGAAGATGGCCTGGTCTGGCAGGAAATTAGAAAAAATGGGAACAGAGTTGCCAAAAGAAGAAGACCAGAAGCAAAATTTAAGGGAGAGAGATAGGGAAAAGAAGAGTCAACATAGAAGGGATTGGATTAAAGGAAACGTTTAGTTTAGCCAGTAGTCACACACACTGAATTTCACATACACGATTTCATTCGTTAGTCACGGATAAGCATCGAAAAGCACAAGTGACTTTGTCTTCTTGAGAAAAGAAGTCGTATGTAAATTTGCTTTTTTTTGTTCGAAAAGGAAATGGAATGGAGGGGCGAAAAAAGGATAATACTGGGGTGGTCCAAATGTAAATAAGCAGGTGGCAGATGGTGAGGGACAAAATATGAATGCACTTCTTGAGAGAGAACGGCGGAGAAGACGTCACGAGATGGGGAAAAAAGCTGCTGAAGACTTAATCTGATTACTCGGGAAATTTCTGTTGACTTCTGGAAAGTGCGAGAATATTAAATTATTGGGGTGTGCAGGGGACAACAGTGTTACGTGATTAATGAAAATTTCAAAATTATCTGGTTCAAAAAGCAAGTCAAAACAATT</canonical>
            <polymorphic>GGGTAACTCACCACGGTGGCCTAGAAAGCTCAACTTGCAAAAGTTAGACCACCACTTCAAAACAACCTGGAAAATACACCATGTGGATATCCCACCAATTCTAGGCCATCTCGCCATGGTGGCCTAGAAAACTCAGCTTGAGAAAGTTATGTCACAACTTCAAAATAACCAAAAAACGAAGGAAAAGCTTCCTGAGGACACCTATAGCCGAACCCTTGTCTGTTTCTAACCCAGTAGGAAAATTCGCCCCATTGATAAAAGGAGTCATTTTGACCCAATTCCCAAGATTGTTTTTCATCTTTGACGCGGAAGTTCGTAACCCATAGGAAGTACTAAACTGACACTCCCCAAGAAAAGGATCCAAGGAAAAACGAACTCATATGAAAACAGGAAATTCGAAAATTAAAAAATGCAAAAGTAGGAAGATGGCCTGGTCTGGCAGGAAATTAGAAAAAATGGGAACAGAGTTGCCAAAAGAAGAAGACCAGAAGCAAAATTTWAGGGAGAGAGATAGGGAAAAGAAGAGTCAACATAGAAGGGATTGGATTAAAGGAAACGTTTAGTTTAGCCAGTAGTCACACACACTGAATTTCACATACACGATTTCATTCGTTAGTCACGGATAAGCATCGAAAAGCACAAGTGACTTTGTCTTCTTGAGAAAAGAAGTCGTATGTAAATTTGCTTTTTTTTGTTCGAAAAGGAAATGGAATGGAGGGGCGAAAAAAGGATAATACTGGGGTGGTCCAAATGTAAATAAGCAGGTGGCAGATGGTGAGGGACAAAATATGAATGCACTTCTTGAGAGAGAACGGCGGAGAAGACGTCACGAGATGGGGAAAAAAGCTGCTGAAGACTTAATCTGATTACTCGGGAAATTTCTGTTGACTTCTGGAAAGTGCGAGAATATTAAATTATTGGGGTGTGCAGGGGACAACAGTGTTACGTGATTAATGAAAATTTCAAAATTATCTGGTTCAAAAAGCAAGTCAAAACAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>403 311 95 52 49 49 41</canonical_bands>
                <polymorphic_bands>403 311 144 52 49 41</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACGAACTCATATGAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>CTAACGAATGAAATCGTGTATGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAACGAACTCATATGAAAACAGGAAATTCGAAAATTAAAAAATGCAAAAGTAGGAAGATGGCCTGGTCTGGCAGGAAATTAGAAAAAATGGGAACAGAGTTGCCAAAAGAAGAAGACCAGAAGCAAAATTTAAGGGAGAGAGATAGGGAAAAGAAGAGTCAACATAGAAGGGATTGGATTAAAGGAAACGTTTAGTTTAGCCAGTAGTCACACACACTGAATTTCACATACACGATTTCATTCGTTAG</canonical_amplicon>
		<polymorphic_amplicon>AAAACGAACTCATATGAAAACAGGAAATTCGAAAATTAAAAAATGCAAAAGTAGGAAGATGGCCTGGTCTGGCAGGAAATTAGAAAAAATGGGAACAGAGTTGCCAAAAGAAGAAGACCAGAAGCAAAATTTWAGGGAGAGAGATAGGGAAAAGAAGAGTCAACATAGAAGGGATTGGATTAAAGGAAACGTTTAGTTTAGCCAGTAGTCACACACACTGAATTTCACATACACGATTTCATTCGTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11867</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>691382</contig_pos>
        <strand>+</strand>
        <context>ACAGGAAATT[A/C]GAAAATTAAM</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCCAAGAAAAGGATCCAAGGAAAAACGAACTCATATGAAAACAGGAAATT</left_flank>
        <right_flank>GAAAATTAAAAAATGCAAAAGTAGGAAGATGGCCTGGTCTGGCAGGAAAT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGTCATTTTGAAGTAGTGGCCTAATTTTTGTAAAATTAATTTACTAGACCACCACTTCAAATGACCTAAAGAACACACCATGGGCATGCTAGGTCACTTCTGGGTAACTCACCACGGTGGCCTAGAAAGCTCAACTTGCAAAAGTTAGACCACCACTTCAAAACAACCTGGAAAATACACCATGTGGATATCCCACCAATTCTAGGCCATCTCGCCATGGTGGCCTAGAAAACTCAGCTTGAGAAAGTTATGTCACAACTTCAAAATAACCAAAAAACGAAGGAAAAGCTTCCTGAGGACACCTATAGCCGAACCCTTGTCTGTTTCTAACCCAGTAGGAAAATTCGCCCCATTGATAAAAGGAGTCATTTTGACCCAATTCCCAAGATTGTTTTTCATCTTTGACGCGGAAGTTCGTAACCCATAGGAAGTACTAAACTGACACTCCCCAAGAAAAGGATCCAAGGAAAAACGAACTCATATGAAAACAGGAAATTCGAAAATTAAAAAATGCAAAAGTAGGAAGATGGCCTGGTCTGGCAGGAAATTAGAAAAAATGGGAACAGAGTTGCCAAAAGAAGAAGACCAGAAGCAAAATTTAAGGGAGAGAGATAGGGAAAAGAAGAGTCAACATAGAAGGGATTGGATTAAAGGAAACGTTTAGTTTAGCCAGTAGTCACACACACTGAATTTCACATACACGATTTCATTCGTTAGTCACGGATAAGCATCGAAAAGCACAAGTGACTTTGTCTTCTTGAGAAAAGAAGTCGTATGTAAATTTGCTTTTTTTTGTTCGAAAAGGAAATGGAATGGAGGGGCGAAAAAAGGATAATACTGGGGTGGTCCAAATGTAAATAAGCAGGTGGCAGATGGTGAGGGACAAAATATGAATGCACTTCTTGAGAGAGAACGGCGGAGAAGACGTCACGAGATGGGGAAAAAAGCTGCTGAAGACTTAATCTGATTACTCGGGAAATTTCTGTTGACTTCTGGAA</canonical>
            <polymorphic>TATGTCATTTTGAAGTAGTGGCCTAATTTTTGTAAAATTAATTTACTAGACCACCACTTCAAATGACCTAAAGAACACACCATGGGCATGCTAGGTCACTTCTGGGTAACTCACCACGGTGGCCTAGAAAGCTCAACTTGCAAAAGTTAGACCACCACTTCAAAACAACCTGGAAAATACACCATGTGGATATCCCACCAATTCTAGGCCATCTCGCCATGGTGGCCTAGAAAACTCAGCTTGAGAAAGTTATGTCACAACTTCAAAATAACCAAAAAACGAAGGAAAAGCTTCCTGAGGACACCTATAGCCGAACCCTTGTCTGTTTCTAACCCAGTAGGAAAATTCGCCCCATTGATAAAAGGAGTCATTTTGACCCAATTCCCAAGATTGTTTTTCATCTTTGACGCGGAAGTTCGTAACCCATAGGAAGTACTAAACTGACACTCCCCAAGAAAAGGATCCAAGGAAAAACGAACTCATATGAAAACAGGAAATTMGAAAATTAAAAAATGCAAAAGTAGGAAGATGGCCTGGTCTGGCAGGAAATTAGAAAAAATGGGAACAGAGTTGCCAAAAGAAGAAGACCAGAAGCAAAATTTAAGGGAGAGAGATAGGGAAAAGAAGAGTCAACATAGAAGGGATTGGATTAAAGGAAACGTTTAGTTTAGCCAGTAGTCACACACACTGAATTTCACATACACGATTTCATTCGTTAGTCACGGATAAGCATCGAAAAGCACAAGTGACTTTGTCTTCTTGAGAAAAGAAGTCGTATGTAAATTTGCTTTTTTTTGTTCGAAAAGGAAATGGAATGGAGGGGCGAAAAAAGGATAATACTGGGGTGGTCCAAATGTAAATAAGCAGGTGGCAGATGGTGAGGGACAAAATATGAATGCACTTCTTGAGAGAGAACGGCGGAGAAGACGTCACGAGATGGGGAAAAAAGCTGCTGAAGACTTAATCTGATTACTCGGGAAATTTCTGTTGACTTCTGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>343 198 152 102 93 91 21</canonical_bands>
                <polymorphic_bands>343 254 198 93 91 21</polymorphic_bands>
            </assay>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>499 300 201</canonical_bands>
                <polymorphic_bands>799 201</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 234 200 66</canonical_bands>
                <polymorphic_bands>734 200 66</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGTAACCCATAGGAAGTACTAA</pcr_primer_p1>
		<pcr_primer_p2>CTTTAATCCAATCCCTTCTATGT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TCGTAACCCATAGGAAGTACTAAACTGACACTCCCCAAGAAAAGGATCCAAGGAAAAACGAACTCATATGAAAACAGGAAATTCGAAAATTAAAAAATGCAAAAGTAGGAAGATGGCCTGGTCTGGCAGGAAATTAGAAAAAATGGGAACAGAGTTGCCAAAAGAAGAAGACCAGAAGCAAAATTTAAGGGAGAGAGATAGGGAAAAGAAGAGTCAACATAGAAGGGATTGGATTAAAG</canonical_amplicon>
		<polymorphic_amplicon>TCGTAACCCATAGGAAGTACTAAACTGACACTCCCCAAGAAAAGGATCCAAGGAAAAACGAACTCATATGAAAACAGGAAATTMGAAAATTAAAAAATGCAAAAGTAGGAAGATGGCCTGGTCTGGCAGGAAATTAGAAAAAATGGGAACAGAGTTGCCAAAAGAAGAAGACCAGAAGCAAAATTTAAGGGAGAGAGATAGGGAAAAGAAGAGTCAACATAGAAGGGATTGGATTAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11880</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>797802</contig_pos>
        <strand>+</strand>
        <context>GCTGAAAATA[A/G]GAATTTTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTCGCCACATTCTCTGGCGCCAAGCAGGTCCGGAATTAGCTGAAAATA</left_flank>
        <right_flank>GAATTTTTGAAATATTAGTGAAATACTTCAGAAAACGAACCCATCATTCT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACAACCTTAGACCATTTATAAGAAGAGAAAAGATTGGAGCCGGTTAGAAACTACCTAGTGGCTCAGAAAAATCTACTTATATTCGAATCAGATGACATTTCAAGGCAACCCATGAGGGTAATAAGACCTTTATTACGTGCAAAAACCTTTTTTGAAAACATAATTATTGTTTTTGAGCAAGGCTGGGTTGATTTCTTGAAAGAGGTAAAGCAACCTTTTGTTTAAATTTTTAATCTAGAGACTAGTCTACGGAAAGAGTGATAAATTTTGTTTTGATGACAGTAGCACTCTGCATCACTCCTTTTAATTAGTTTGATTTCTAGAATTGGCTCTCCAGGGATCTTTATTGAGATTATATAGTTTTCAACGAAACAAAAAATCAATTAGTGAGCAAGTTCATCAATCCATCATCAGCGAGATCCATGAATGCTGGAGACGGGATTCGAGTCTTTCGCCACATTCTCTGGCGCCAAGCAGGTCCGGAATTAGCTGAAAATAAGAATTTTTGAAATATTAGTGAAATACTTCAGAAAACGAACCCATCATTCTATATTGTGCATCGACCAAAACCAAAACAAGCAGAAAAACGGCAAAGAGTCTAATAGTGGATTGCATTTTCGGAGAATTGAGATCTGGAAGAACAAAAATGTATATTTAGAGTTGTGAAATGAAATATGAGGAAGTGGGCGAGGTTTAAAAAAGGAGTTCAACCATAATTCGTTTAGGATATAAACCAATAATCCGAGGGAAGTACGTAACTTCCTAGTCAAAACTATTTTAATACTCCAAGGCTTAGGAGATCGAAAATTTCAAACATACTCCGCCCTGAGCAGGTGATCTGCCAAAACTGTAATTCAGATTGAATCCTAATTAGAAACGAATTCCAAAAATGTTCACCTGTCTCAATTGATAGTTCACCGATCTTGGAATGATATCAATCTGGAGAATTCTAATTGGAGTGACAATTTCACCTGCTTCCTTCCGAAATCAAAGAATCTA</canonical>
            <polymorphic>GACAACCTTAGACCATTTATAAGAAGAGAAAAGATTGGAGCCGGTTAGAAACTACCTAGTGGCTCAGAAAAATCTACTTATATTCGAATCAGATGACATTTCAAGGCAACCCATGAGGGTAATAAGACCTTTATTACGTGCAAAAACCTTTTTTGAAAACATAATTATTGTTTTTGAGCAAGGCTGGGTTGATTTCTTGAAAGAGGTAAAGCAACCTTTTGTTTAAATTTTTAATCTAGAGACTAGTCTACGGAAAGAGTGATAAATTTTGTTTTGATGACAGTAGCACTCTGCATCACTCCTTTTAATTAGTTTGATTTCTAGAATTGGCTCTCCAGGGATCTTTATTGAGATTATATAGTTTTCAACGAAACAAAAAATCAATTAGTGAGCAAGTTCATCAATCCATCATCAGCGAGATCCATGAATGCTGGAGACGGGATTCGAGTCTTTCGCCACATTCTCTGGCGCCAAGCAGGTCCGGAATTAGCTGAAAATARGAATTTTTGAAATATTAGTGAAATACTTCAGAAAACGAACCCATCATTCTATATTGTGCATCGACCAAAACCAAAACAAGCAGAAAAACGGCAAAGAGTCTAATAGTGGATTGCATTTTCGGAGAATTGAGATCTGGAAGAACAAAAATGTATATTTAGAGTTGTGAAATGAAATATGAGGAAGTGGGCGAGGTTTAAAAAAGGAGTTCAACCATAATTCGTTTAGGATATAAACCAATAATCCGAGGGAAGTACGTAACTTCCTAGTCAAAACTATTTTAATACTCCAAGGCTTAGGAGATCGAAAATTTCAAACATACTCCGCCCTGAGCAGGTGATCTGCCAAAACTGTAATTCAGATTGAATCCTAATTAGAAACGAATTCCAAAAATGTTCACCTGTCTCAATTGATAGTTCACCGATCTTGGAATGATATCAATCTGGAGAATTCTAATTGGAGTGACAATTTCACCTGCTTCCTTCCGAAATCAAAGAATCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGATTTCTAGAATTGGCTCTC</pcr_primer_p1>
		<pcr_primer_p2>GTCGATGCACAATATAGAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTGATTTCTAGAATTGGCTCTCCAGGGATCTTTATTGAGATTATATAGTTTTCAACGAAACAAAAAATCAATTAGTGAGCAAGTTCATCAATCCATCATCAGCGAGATCCATGAATGCTGGAGACGGGATTCGAGTCTTTCGCCACATTCTCTGGCGCCAAGCAGGTCCGGAATTAGCTGAAAATAAGAATTTTTGAAATATTAGTGAAATACTTCAGAAAACGAACCCATCATTCTATATTGTGCATCGAC</canonical_amplicon>
		<polymorphic_amplicon>TTGATTTCTAGAATTGGCTCTCCAGGGATCTTTATTGAGATTATATAGTTTTCAACGAAACAAAAAATCAATTAGTGAGCAAGTTCATCAATCCATCATCAGCGAGATCCATGAATGCTGGAGACGGGATTCGAGTCTTTCGCCACATTCTCTGGCGCCAAGCAGGTCCGGAATTAGCTGAAAATARGAATTTTTGAAATATTAGTGAAATACTTCAGAAAACGAACCCATCATTCTATATTGTGCATCGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11881</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>797907</contig_pos>
        <strand>+</strand>
        <context>AGAGTCTAAT[A/C]GTGGATTGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGTGCATCGACCAAAACCAAAACAAGCAGAAAAACGGCAAAGAGTCTAAT</left_flank>
        <right_flank>GTGGATTGCATTTTCGGAGAATTGAGATCTGGAAGAACAAAAATGTATAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAACCCATGAGGGTAATAAGACCTTTATTACGTGCAAAAACCTTTTTTGAAAACATAATTATTGTTTTTGAGCAAGGCTGGGTTGATTTCTTGAAAGAGGTAAAGCAACCTTTTGTTTAAATTTTTAATCTAGAGACTAGTCTACGGAAAGAGTGATAAATTTTGTTTTGATGACAGTAGCACTCTGCATCACTCCTTTTAATTAGTTTGATTTCTAGAATTGGCTCTCCAGGGATCTTTATTGAGATTATATAGTTTTCAACGAAACAAAAAATCAATTAGTGAGCAAGTTCATCAATCCATCATCAGCGAGATCCATGAATGCTGGAGACGGGATTCGAGTCTTTCGCCACATTCTCTGGCGCCAAGCAGGTCCGGAATTAGCTGAAAATAAGAATTTTTGAAATATTAGTGAAATACTTCAGAAAACGAACCCATCATTCTATATTGTGCATCGACCAAAACCAAAACAAGCAGAAAAACGGCAAAGAGTCTAATAGTGGATTGCATTTTCGGAGAATTGAGATCTGGAAGAACAAAAATGTATATTTAGAGTTGTGAAATGAAATATGAGGAAGTGGGCGAGGTTTAAAAAAGGAGTTCAACCATAATTCGTTTAGGATATAAACCAATAATCCGAGGGAAGTACGTAACTTCCTAGTCAAAACTATTTTAATACTCCAAGGCTTAGGAGATCGAAAATTTCAAACATACTCCGCCCTGAGCAGGTGATCTGCCAAAACTGTAATTCAGATTGAATCCTAATTAGAAACGAATTCCAAAAATGTTCACCTGTCTCAATTGATAGTTCACCGATCTTGGAATGATATCAATCTGGAGAATTCTAATTGGAGTGACAATTTCACCTGCTTCCTTCCGAAATCAAAGAATCTATGAGAGGCGGAGAGGAACCTTTGCCGATTAGCTACAAACTGATGTCAACTGGAAAAGAAGAATACATTCTATTCTATTTTCTCGGTCACACACATCGAGAAGGCA</canonical>
            <polymorphic>GCAACCCATGAGGGTAATAAGACCTTTATTACGTGCAAAAACCTTTTTTGAAAACATAATTATTGTTTTTGAGCAAGGCTGGGTTGATTTCTTGAAAGAGGTAAAGCAACCTTTTGTTTAAATTTTTAATCTAGAGACTAGTCTACGGAAAGAGTGATAAATTTTGTTTTGATGACAGTAGCACTCTGCATCACTCCTTTTAATTAGTTTGATTTCTAGAATTGGCTCTCCAGGGATCTTTATTGAGATTATATAGTTTTCAACGAAACAAAAAATCAATTAGTGAGCAAGTTCATCAATCCATCATCAGCGAGATCCATGAATGCTGGAGACGGGATTCGAGTCTTTCGCCACATTCTCTGGCGCCAAGCAGGTCCGGAATTAGCTGAAAATAAGAATTTTTGAAATATTAGTGAAATACTTCAGAAAACGAACCCATCATTCTATATTGTGCATCGACCAAAACCAAAACAAGCAGAAAAACGGCAAAGAGTCTAATMGTGGATTGCATTTTCGGAGAATTGAGATCTGGAAGAACAAAAATGTATATTTAGAGTTGTGAAATGAAATATGAGGAAGTGGGCGAGGTTTAAAAAAGGAGTTCAACCATAATTCGTTTAGGATATAAACCAATAATCCGAGGGAAGTACGTAACTTCCTAGTCAAAACTATTTTAATACTCCAAGGCTTAGGAGATCGAAAATTTCAAACATACTCCGCCCTGAGCAGGTGATCTGCCAAAACTGTAATTCAGATTGAATCCTAATTAGAAACGAATTCCAAAAATGTTCACCTGTCTCAATTGATAGTTCACCGATCTTGGAATGATATCAATCTGGAGAATTCTAATTGGAGTGACAATTTCACCTGCTTCCTTCCGAAATCAAAGAATCTATGAGAGGCGGAGAGGAACCTTTGCCGATTAGCTACAAACTGATGTCAACTGGAAAAGAAGAATACATTCTATTCTATTTTCTCGGTCACACACATCGAGAAGGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCCGGAATTAGCTGAAAATA</pcr_primer_p1>
		<pcr_primer_p2>CTAAACGAATTATGGTTGAACTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTCCGGAATTAGCTGAAAATAAGAATTTTTGAAATATTAGTGAAATACTTCAGAAAACGAACCCATCATTCTATATTGTGCATCGACCAAAACCAAAACAAGCAGAAAAACGGCAAAGAGTCTAATAGTGGATTGCATTTTCGGAGAATTGAGATCTGGAAGAACAAAAATGTATATTTAGAGTTGTGAAATGAAATATGAGGAAGTGGGCGAGGTTTAAAAAAGGAGTTCAACCATAATTCGTTTAG</canonical_amplicon>
		<polymorphic_amplicon>GTCCGGAATTAGCTGAAAATAAGAATTTTTGAAATATTAGTGAAATACTTCAGAAAACGAACCCATCATTCTATATTGTGCATCGACCAAAACCAAAACAAGCAGAAAAACGGCAAAGAGTCTAATMGTGGATTGCATTTTCGGAGAATTGAGATCTGGAAGAACAAAAATGTATATTTAGAGTTGTGAAATGAAATATGAGGAAGTGGGCGAGGTTTAAAAAAGGAGTTCAACCATAATTCGTTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11882</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>799287</contig_pos>
        <strand>+</strand>
        <context>CAAAWAGTCC[A/T]AAAATAAGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTAGTTAAACCCTGTTTTGAATTTTTTGGATTCATGAAAACAAAAAGTCC</left_flank>
        <right_flank>AAAATAAGGGATCTCAAAAAGTACTATTCGGGACCCCTATTTTTGAACTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTCATTTCTAGGCCTTAAAAGTTGGTGACCTAGAAAATTCAATTTGAAAGTGTAGGTGTTTTGAAGTTAGACGTTAGAATGATCTGGAAAACACATCTGGGGCATGTTAGGCTATTCCTAGGCCATTTTACCATGTGGCCTAGAAAACTTAACTTGCAAAAGTTAGGCCACAACTTCGAAATGACCTAGAAAACATACGAGGGGAACATTAGACAATCTCTAGGTCTCTTTAACGTGGTGGCTTAGAAAACGCAATCAGTAAAAGTTAGGCCACCATATTGCAAGTTGAGTTTTATAGGCCACCGATCTTTATGGTCTAGAAATGAATTGATTTTCGAAATTAGCCGTTTTCTGAAGATTCCATACTACAAATTGTTTATATCTAGATAAGAAAATGTGAGAACAACATTGGATTCTTCTTCGTATCCTTTGGAGATACAAGGAGCTGTAGTTAAACCCTGTTTTGAATTTTTTGGATTCATGAAAACAAAAAGTCCTAAAATAAGGGATCTCAAAAAGTACTATTCGGGACCCCTATTTTTGAACTTTGAGCCAATTTATCTCGGTTCCTGCAAAAGATATAAAAAAGTTGTCAACTGATAAATTGCTTATCATAATATCACAATTTTTATTAGTTGACACTTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAAACTCGGGTTAGAACTAATAAAATTTTTTCCTCAGAATGAGAAGCGCACAAATGGCTCAAAAAGCGCAGTTGGCACCTCAATTAGCGGCTGCTGCACCAGTTCCTATGGACCCTTATCAGCAATATCTTCAATATCAAATGTACCAACAAATGGAGATGCCGCCTCAAGCAGCAGCACCCTACTCTCCATTTGGCGTATATGGTCCAATATATAGAGGTGGGAAAAACTTTTTTCCGAAAAAAGTGGAGCCTTTAA</canonical>
            <polymorphic>AGGTCATTTCTAGGCCTTAAAAGTTGGTGACCTAGAAAATTCAATTTGAAAGTGTAGGTGTTTTGAAGTTAGACGTTAGAATGATCTGGAAAACACATCTGGGGCATGTTAGGCTATTCCTAGGCCATTTTACCATGTGGCCTAGAAAACTTAACTTGCAAAAGTTAGGCCACAACTTCGAAATGACCTAGAAAACATACGAGGGGAACATTAGACAATCTCTAGGTCTCTTTAACGTGGTGGCTTAGAAAACGCAATCAGTAAAAGTTAGGCCACCATATTGCAAGTTGAGTTTTATAGGCCACCGATCTTTATGGTCTAGAAATGAATTGATTTTCGAAATTAGCCGTTTTCTGAAGATTCCATACTACAAATTGTTTATATCTAGATAAGAAAATGTGAGAACAACATTGGATTCTTCTTCGTATCCTTTGGAGATACAAGGAGCTGTAGTTAAACCCTGTTTTGAATTTTTTGGATTCATGAAAACAAAAAGTCCWAAAATAAGGGATCTCAAAAAGTACTATTCGGGACCCCTATTTTTGAACTTTGAGCCAATTTATCTCGGTTCCTGCAAAAGATATAAAAAAGTTGTCAACTGATAAATTGCTTATCATAATATCACAATTTTTATTAGTTGACACTTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAAACTCGGGTTAGAACTAATAAAATTTTTTCCTCAGAATGAGAAGCGCACAAATGGCTCAAAAAGCGCAGTTGGCACCTCAATTAGCGGCTGCTGCACCAGTTCCTATGGACCCTTATCAGCAATATCTTCAATATCAAATGTACCAACAAATGGAGATGCCGCCTCAAGCAGCAGCACCCTACTCTCCATTTGGCGTATATGGTCCAATATATAGAGGTGGGAAAAACTTTTTTCCGAAAAAAGTGGAGCCTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTGTAGTTAAACCCTGTTTTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTAACACCGATCTGAATATCT</pcr_primer_p2>
		<pcr_amplicon_size>299</pcr_amplicon_size>
		<canonical_amplicon>GCTGTAGTTAAACCCTGTTTTGAATTTTTTGGATTCATGAAAACAAAAAGTCCTAAAATAAGGGATCTCAAAAAGTACTATTCGGGACCCCTATTTTTGAACTTTGAGCCAATTTATCTCGGTTCCTGCAAAAGATATAAAAAAGTTGTCAACTGATAAATTGCTTATCATAATATCACAATTTTTATTAGTTGACACTTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAA</canonical_amplicon>
		<polymorphic_amplicon>GCTGTAGTTAAACCCTGTTTTGAATTTTTTGGATTCATGAAAACAAAAAGTCCWAAAATAAGGGATCTCAAAAAGTACTATTCGGGACCCCTATTTTTGAACTTTGAGCCAATTTATCTCGGTTCCTGCAAAAGATATAAAAAAGTTGTCAACTGATAAATTGCTTATCATAATATCACAATTTTTATTAGTTGACACTTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11883</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>799281</contig_pos>
        <strand>+</strand>
        <context>TGAAAACAAA[A/T]AGTCCWAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAGCTGTAGTTAAACCCTGTTTTGAATTTTTTGGATTCATGAAAACAAA</left_flank>
        <right_flank>AGTCCTAAAATAAGGGATCTCAAAAAGTACTATTCGGGACCCCTATTTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTATCAGGTCATTTCTAGGCCTTAAAAGTTGGTGACCTAGAAAATTCAATTTGAAAGTGTAGGTGTTTTGAAGTTAGACGTTAGAATGATCTGGAAAACACATCTGGGGCATGTTAGGCTATTCCTAGGCCATTTTACCATGTGGCCTAGAAAACTTAACTTGCAAAAGTTAGGCCACAACTTCGAAATGACCTAGAAAACATACGAGGGGAACATTAGACAATCTCTAGGTCTCTTTAACGTGGTGGCTTAGAAAACGCAATCAGTAAAAGTTAGGCCACCATATTGCAAGTTGAGTTTTATAGGCCACCGATCTTTATGGTCTAGAAATGAATTGATTTTCGAAATTAGCCGTTTTCTGAAGATTCCATACTACAAATTGTTTATATCTAGATAAGAAAATGTGAGAACAACATTGGATTCTTCTTCGTATCCTTTGGAGATACAAGGAGCTGTAGTTAAACCCTGTTTTGAATTTTTTGGATTCATGAAAACAAAAAGTCCTAAAATAAGGGATCTCAAAAAGTACTATTCGGGACCCCTATTTTTGAACTTTGAGCCAATTTATCTCGGTTCCTGCAAAAGATATAAAAAAGTTGTCAACTGATAAATTGCTTATCATAATATCACAATTTTTATTAGTTGACACTTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAAACTCGGGTTAGAACTAATAAAATTTTTTCCTCAGAATGAGAAGCGCACAAATGGCTCAAAAAGCGCAGTTGGCACCTCAATTAGCGGCTGCTGCACCAGTTCCTATGGACCCTTATCAGCAATATCTTCAATATCAAATGTACCAACAAATGGAGATGCCGCCTCAAGCAGCAGCACCCTACTCTCCATTTGGCGTATATGGTCCAATATATAGAGGTGGGAAAAACTTTTTTCCGAAAAAAGTGGAGC</canonical>
            <polymorphic>AGTATCAGGTCATTTCTAGGCCTTAAAAGTTGGTGACCTAGAAAATTCAATTTGAAAGTGTAGGTGTTTTGAAGTTAGACGTTAGAATGATCTGGAAAACACATCTGGGGCATGTTAGGCTATTCCTAGGCCATTTTACCATGTGGCCTAGAAAACTTAACTTGCAAAAGTTAGGCCACAACTTCGAAATGACCTAGAAAACATACGAGGGGAACATTAGACAATCTCTAGGTCTCTTTAACGTGGTGGCTTAGAAAACGCAATCAGTAAAAGTTAGGCCACCATATTGCAAGTTGAGTTTTATAGGCCACCGATCTTTATGGTCTAGAAATGAATTGATTTTCGAAATTAGCCGTTTTCTGAAGATTCCATACTACAAATTGTTTATATCTAGATAAGAAAATGTGAGAACAACATTGGATTCTTCTTCGTATCCTTTGGAGATACAAGGAGCTGTAGTTAAACCCTGTTTTGAATTTTTTGGATTCATGAAAACAAAWAGTCCTAAAATAAGGGATCTCAAAAAGTACTATTCGGGACCCCTATTTTTGAACTTTGAGCCAATTTATCTCGGTTCCTGCAAAAGATATAAAAAAGTTGTCAACTGATAAATTGCTTATCATAATATCACAATTTTTATTAGTTGACACTTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAAACTCGGGTTAGAACTAATAAAATTTTTTCCTCAGAATGAGAAGCGCACAAATGGCTCAAAAAGCGCAGTTGGCACCTCAATTAGCGGCTGCTGCACCAGTTCCTATGGACCCTTATCAGCAATATCTTCAATATCAAATGTACCAACAAATGGAGATGCCGCCTCAAGCAGCAGCACCCTACTCTCCATTTGGCGTATATGGTCCAATATATAGAGGTGGGAAAAACTTTTTTCCGAAAAAAGTGGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGCTGTAGTTAAACCCTGT</pcr_primer_p1>
		<pcr_primer_p2>TTTTAACACCGATCTGAATATCT</pcr_primer_p2>
		<pcr_amplicon_size>302</pcr_amplicon_size>
		<canonical_amplicon>GGAGCTGTAGTTAAACCCTGTTTTGAATTTTTTGGATTCATGAAAACAAAAAGTCCTAAAATAAGGGATCTCAAAAAGTACTATTCGGGACCCCTATTTTTGAACTTTGAGCCAATTTATCTCGGTTCCTGCAAAAGATATAAAAAAGTTGTCAACTGATAAATTGCTTATCATAATATCACAATTTTTATTAGTTGACACTTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGAGCTGTAGTTAAACCCTGTTTTGAATTTTTTGGATTCATGAAAACAAAWAGTCCTAAAATAAGGGATCTCAAAAAGTACTATTCGGGACCCCTATTTTTGAACTTTGAGCCAATTTATCTCGGTTCCTGCAAAAGATATAAAAAAGTTGTCAACTGATAAATTGCTTATCATAATATCACAATTTTTATTAGTTGACACTTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11884</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>799866</contig_pos>
        <strand>+</strand>
        <context>TTTGAATGGA[C/T]CTTATTGGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAATCCTAAATTATTCAAGAAGAAGTTATTCATTAGGAATTTGAATGGA</left_flank>
        <right_flank>CTTATTGGAATCTGGTTATTTCTTATTCCTTTCATTTGGATTGTTTTTAC</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATATAAAAAAGTTGTCAACTGATAAATTGCTTATCATAATATCACAATTTTTATTAGTTGACACTTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAAACTCGGGTTAGAACTAATAAAATTTTTTCCTCAGAATGAGAAGCGCACAAATGGCTCAAAAAGCGCAGTTGGCACCTCAATTAGCGGCTGCTGCACCAGTTCCTATGGACCCTTATCAGCAATATCTTCAATATCAAATGTACCAACAAATGGAGATGCCGCCTCAAGCAGCAGCACCCTACTCTCCATTTGGCGTATATGGTCCAATATATAGAGGTGGGAAAAACTTTTTTCCGAAAAAAGTGGAGCCTTTAAGAATGGGGTGGTTCAAAGATCCTCCTCCAGAATCCTAAATTATTCAAGAAGAAGTTATTCATTAGGAATTTGAATGGACCTTATTGGAATCTGGTTATTTCTTATTCCTTTCATTTGGATTGTTTTTACACCAAAAATTTTTGTGTTAAAAGACAAAAAAAACAAAATCCCTATTTCCGGTAATAAGATATTTTAATATTTTTTCCTTCGAATTGAAATTAAACTTCAATTTTAAATAAAAACAAGTCAAAGGGAAAAGACTAGGATATCCTTTCAGATAGATCCTTATCCCTGATGAATGAAAAAAGTGAATTTCAAACTTTGAAACCTCTCTCTTTTTCAACACGTGACCAAAAGCCACCTACTTTCTGGAAGTGACGAATTAGGGTGACATTTGCAATTGGCTATGAAAAAAGGCAGAAGTTGCAGAACAATTTTGGTGATTTGTGATTTCAGGAAGTCATAAAATGCATAATACTTGAACCGATTTCTCATAGGTTTTCGATCAGTTAGAACTATTGAGAAGTCTCGTCCAAATTTATAGTAGTACTACAATAGAAGGGCCCCCAAATCATCAAT</canonical>
            <polymorphic>GATATAAAAAAGTTGTCAACTGATAAATTGCTTATCATAATATCACAATTTTTATTAGTTGACACTTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAAACTCGGGTTAGAACTAATAAAATTTTTTCCTCAGAATGAGAAGCGCACAAATGGCTCAAAAAGCGCAGTTGGCACCTCAATTAGCGGCTGCTGCACCAGTTCCTATGGACCCTTATCAGCAATATCTTCAATATCAAATGTACCAACAAATGGAGATGCCGCCTCAAGCAGCAGCACCCTACTCTCCATTTGGCGTATATGGTCCAATATATAGAGGTGGGAAAAACTTTTTTCCGAAAAAAGTGGAGCCTTTAAGAATGGGGTGGTTCAAAGATCCTCCTCCAGAATCCTAAATTATTCAAGAAGAAGTTATTCATTAGGAATTTGAATGGAYCTTATTGGAATCTGGTTATTTCTTATTCCTTTCATTTGGATTGTTTTTACACCAAAAATTTTTGTGTTAAAAGACAAAAAAAACAAAATCCCTATTTCCGGTAATAAGATATTTTAATATTTTTTCCTTCGAATTGAAATTAAACTTCAATTTTAAATAAAAACAAGTCAAAGGGAAAAGACTAGGATATCCTTTCAGATAGATCCTTATCCCTGATGAATGAAAAAAGTGAATTTCAAACTTTGAAACCTCTCTCTTTTTCAACACGTGACCAAAAGCCACCTACTTTCTGGAAGTGACGAATTAGGGTGACATTTGCAATTGGCTATGAAAAAAGGCAGAAGTTGCAGAACAATTTTGGTGATTTGTGATTTCAGGAAGTCATAAAATGCATAATACTTGAACCGATTTCTCATAGGTTTTCGATCAGTTAGAACTATTGAGAAGTCTCGTCCAAATTTATAGTAGTACTACAATAGAAGGGCCCCCAAATCATCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>503 273 130 94</canonical_bands>
                <polymorphic_bands>633 273 94</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>485 151 130 125 94 15</canonical_bands>
                <polymorphic_bands>615 151 125 94 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCTCCTCCAGAATCCTAA</pcr_primer_p1>
		<pcr_primer_p2>TATCCTAGTCTTTTCCCTTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCCTCCTCCAGAATCCTAAATTATTCAAGAAGAAGTTATTCATTAGGAATTTGAATGGACCTTATTGGAATCTGGTTATTTCTTATTCCTTTCATTTGGATTGTTTTTACACCAAAAATTTTTGTGTTAAAAGACAAAAAAAACAAAATCCCTATTTCCGGTAATAAGATATTTTAATATTTTTTCCTTCGAATTGAAATTAAACTTCAATTTTAAATAAAAACAAGTCAAAGGGAAAAGACTAGGATA</canonical_amplicon>
		<polymorphic_amplicon>ATCCTCCTCCAGAATCCTAAATTATTCAAGAAGAAGTTATTCATTAGGAATTTGAATGGAYCTTATTGGAATCTGGTTATTTCTTATTCCTTTCATTTGGATTGTTTTTACACCAAAAATTTTTGTGTTAAAAGACAAAAAAAACAAAATCCCTATTTCCGGTAATAAGATATTTTAATATTTTTTCCTTCGAATTGAAATTAAACTTCAATTTTAAATAAAAACAAGTCAAAGGGAAAAGACTAGGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11885</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>799827</contig_pos>
        <strand>+</strand>
        <context>GAATCCTAAW[A/T]TATTCAAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAGCCTTTAAGAATGGGGTGGTTCAAAGATCCTCCTCCAGAATCCTAAA</left_flank>
        <right_flank>TATTCAAGAAGAAGTTATTCATTAGGAATTTGAATGGACCTTATTGGAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGAACTTTGAGCCAATTTATCTCGGTTCCTGCAAAAGATATAAAAAAGTTGTCAACTGATAAATTGCTTATCATAATATCACAATTTTTATTAGTTGACACTTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAAACTCGGGTTAGAACTAATAAAATTTTTTCCTCAGAATGAGAAGCGCACAAATGGCTCAAAAAGCGCAGTTGGCACCTCAATTAGCGGCTGCTGCACCAGTTCCTATGGACCCTTATCAGCAATATCTTCAATATCAAATGTACCAACAAATGGAGATGCCGCCTCAAGCAGCAGCACCCTACTCTCCATTTGGCGTATATGGTCCAATATATAGAGGTGGGAAAAACTTTTTTCCGAAAAAAGTGGAGCCTTTAAGAATGGGGTGGTTCAAAGATCCTCCTCCAGAATCCTAAATTATTCAAGAAGAAGTTATTCATTAGGAATTTGAATGGACCTTATTGGAATCTGGTTATTTCTTATTCCTTTCATTTGGATTGTTTTTACACCAAAAATTTTTGTGTTAAAAGACAAAAAAAACAAAATCCCTATTTCCGGTAATAAGATATTTTAATATTTTTTCCTTCGAATTGAAATTAAACTTCAATTTTAAATAAAAACAAGTCAAAGGGAAAAGACTAGGATATCCTTTCAGATAGATCCTTATCCCTGATGAATGAAAAAAGTGAATTTCAAACTTTGAAACCTCTCTCTTTTTCAACACGTGACCAAAAGCCACCTACTTTCTGGAAGTGACGAATTAGGGTGACATTTGCAATTGGCTATGAAAAAAGGCAGAAGTTGCAGAACAATTTTGGTGATTTGTGATTTCAGGAAGTCATAAAATGCATAATACTTGAACCGATTTCTCATAGGTTTTCGATCAGTTAGAACTATTGAGAAGTCTCGTCCAAATTT</canonical>
            <polymorphic>TTTTGAACTTTGAGCCAATTTATCTCGGTTCCTGCAAAAGATATAAAAAAGTTGTCAACTGATAAATTGCTTATCATAATATCACAATTTTTATTAGTTGACACTTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAAACTCGGGTTAGAACTAATAAAATTTTTTCCTCAGAATGAGAAGCGCACAAATGGCTCAAAAAGCGCAGTTGGCACCTCAATTAGCGGCTGCTGCACCAGTTCCTATGGACCCTTATCAGCAATATCTTCAATATCAAATGTACCAACAAATGGAGATGCCGCCTCAAGCAGCAGCACCCTACTCTCCATTTGGCGTATATGGTCCAATATATAGAGGTGGGAAAAACTTTTTTCCGAAAAAAGTGGAGCCTTTAAGAATGGGGTGGTTCAAAGATCCTCCTCCAGAATCCTAAAWTATTCAAGAAGAAGTTATTCATTAGGAATTTGAATGGACCTTATTGGAATCTGGTTATTTCTTATTCCTTTCATTTGGATTGTTTTTACACCAAAAATTTTTGTGTTAAAAGACAAAAAAAACAAAATCCCTATTTCCGGTAATAAGATATTTTAATATTTTTTCCTTCGAATTGAAATTAAACTTCAATTTTAAATAAAAACAAGTCAAAGGGAAAAGACTAGGATATCCTTTCAGATAGATCCTTATCCCTGATGAATGAAAAAAGTGAATTTCAAACTTTGAAACCTCTCTCTTTTTCAACACGTGACCAAAAGCCACCTACTTTCTGGAAGTGACGAATTAGGGTGACATTTGCAATTGGCTATGAAAAAAGGCAGAAGTTGCAGAACAATTTTGGTGATTTGTGATTTCAGGAAGTCATAAAATGCATAATACTTGAACCGATTTCTCATAGGTTTTCGATCAGTTAGAACTATTGAGAAGTCTCGTCCAAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>214 140 103 83 75 70 69 58 48 34 29 21 18 16 11 6 5</canonical_bands>
                <polymorphic_bands>243 140 103 83 75 70 69 58 48 34 21 18 16 11 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATATATAGAGGTGGGAAAAACT</pcr_primer_p1>
		<pcr_primer_p2>ATTACCGGAAATAGGGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>CAATATATAGAGGTGGGAAAAACTTTTTTCCGAAAAAAGTGGAGCCTTTAAGAATGGGGTGGTTCAAAGATCCTCCTCCAGAATCCTAAATTATTCAAGAAGAAGTTATTCATTAGGAATTTGAATGGACCTTATTGGAATCTGGTTATTTCTTATTCCTTTCATTTGGATTGTTTTTACACCAAAAATTTTTGTGTTAAAAGACAAAAAAAACAAAATCCCTATTTCCGGTAAT</canonical_amplicon>
		<polymorphic_amplicon>CAATATATAGAGGTGGGAAAAACTTTTTTCCGAAAAAAGTGGAGCCTTTAAGAATGGGGTGGTTCAAAGATCCTCCTCCAGAATCCTAAAWTATTCAAGAAGAAGTTATTCATTAGGAATTTGAATGGACCTTATTGGAATCTGGTTATTTCTTATTCCTTTCATTTGGATTGTTTTTACACCAAAAATTTTTGTGTTAAAAGACAAAAAAAACAAAATCCCTATTTCCGGTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11886</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>799826</contig_pos>
        <strand>+</strand>
        <context>AGAATCCTAA[A/T]WTATTCAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGGAGCCTTTAAGAATGGGGTGGTTCAAAGATCCTCCTCCAGAATCCTAA</left_flank>
        <right_flank>TTATTCAAGAAGAAGTTATTCATTAGGAATTTGAATGGACCTTATTGGAA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTGAACTTTGAGCCAATTTATCTCGGTTCCTGCAAAAGATATAAAAAAGTTGTCAACTGATAAATTGCTTATCATAATATCACAATTTTTATTAGTTGACACTTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAAACTCGGGTTAGAACTAATAAAATTTTTTCCTCAGAATGAGAAGCGCACAAATGGCTCAAAAAGCGCAGTTGGCACCTCAATTAGCGGCTGCTGCACCAGTTCCTATGGACCCTTATCAGCAATATCTTCAATATCAAATGTACCAACAAATGGAGATGCCGCCTCAAGCAGCAGCACCCTACTCTCCATTTGGCGTATATGGTCCAATATATAGAGGTGGGAAAAACTTTTTTCCGAAAAAAGTGGAGCCTTTAAGAATGGGGTGGTTCAAAGATCCTCCTCCAGAATCCTAAATTATTCAAGAAGAAGTTATTCATTAGGAATTTGAATGGACCTTATTGGAATCTGGTTATTTCTTATTCCTTTCATTTGGATTGTTTTTACACCAAAAATTTTTGTGTTAAAAGACAAAAAAAACAAAATCCCTATTTCCGGTAATAAGATATTTTAATATTTTTTCCTTCGAATTGAAATTAAACTTCAATTTTAAATAAAAACAAGTCAAAGGGAAAAGACTAGGATATCCTTTCAGATAGATCCTTATCCCTGATGAATGAAAAAAGTGAATTTCAAACTTTGAAACCTCTCTCTTTTTCAACACGTGACCAAAAGCCACCTACTTTCTGGAAGTGACGAATTAGGGTGACATTTGCAATTGGCTATGAAAAAAGGCAGAAGTTGCAGAACAATTTTGGTGATTTGTGATTTCAGGAAGTCATAAAATGCATAATACTTGAACCGATTTCTCATAGGTTTTCGATCAGTTAGAACTATTGAGAAGTCTCGTCCAAATT</canonical>
            <polymorphic>TTTTTGAACTTTGAGCCAATTTATCTCGGTTCCTGCAAAAGATATAAAAAAGTTGTCAACTGATAAATTGCTTATCATAATATCACAATTTTTATTAGTTGACACTTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAAACTCGGGTTAGAACTAATAAAATTTTTTCCTCAGAATGAGAAGCGCACAAATGGCTCAAAAAGCGCAGTTGGCACCTCAATTAGCGGCTGCTGCACCAGTTCCTATGGACCCTTATCAGCAATATCTTCAATATCAAATGTACCAACAAATGGAGATGCCGCCTCAAGCAGCAGCACCCTACTCTCCATTTGGCGTATATGGTCCAATATATAGAGGTGGGAAAAACTTTTTTCCGAAAAAAGTGGAGCCTTTAAGAATGGGGTGGTTCAAAGATCCTCCTCCAGAATCCTAAWTTATTCAAGAAGAAGTTATTCATTAGGAATTTGAATGGACCTTATTGGAATCTGGTTATTTCTTATTCCTTTCATTTGGATTGTTTTTACACCAAAAATTTTTGTGTTAAAAGACAAAAAAAACAAAATCCCTATTTCCGGTAATAAGATATTTTAATATTTTTTCCTTCGAATTGAAATTAAACTTCAATTTTAAATAAAAACAAGTCAAAGGGAAAAGACTAGGATATCCTTTCAGATAGATCCTTATCCCTGATGAATGAAAAAAGTGAATTTCAAACTTTGAAACCTCTCTCTTTTTCAACACGTGACCAAAAGCCACCTACTTTCTGGAAGTGACGAATTAGGGTGACATTTGCAATTGGCTATGAAAAAAGGCAGAAGTTGCAGAACAATTTTGGTGATTTGTGATTTCAGGAAGTCATAAAATGCATAATACTTGAACCGATTTCTCATAGGTTTTCGATCAGTTAGAACTATTGAGAAGTCTCGTCCAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>214 140 103 83 75 70 69 58 48 34 29 21 18 17 11 6 4</canonical_bands>
                <polymorphic_bands>243 140 103 83 75 70 69 58 48 34 21 18 17 11 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATATATAGAGGTGGGAAAAACT</pcr_primer_p1>
		<pcr_primer_p2>ATTACCGGAAATAGGGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>CAATATATAGAGGTGGGAAAAACTTTTTTCCGAAAAAAGTGGAGCCTTTAAGAATGGGGTGGTTCAAAGATCCTCCTCCAGAATCCTAAATTATTCAAGAAGAAGTTATTCATTAGGAATTTGAATGGACCTTATTGGAATCTGGTTATTTCTTATTCCTTTCATTTGGATTGTTTTTACACCAAAAATTTTTGTGTTAAAAGACAAAAAAAACAAAATCCCTATTTCCGGTAAT</canonical_amplicon>
		<polymorphic_amplicon>CAATATATAGAGGTGGGAAAAACTTTTTTCCGAAAAAAGTGGAGCCTTTAAGAATGGGGTGGTTCAAAGATCCTCCTCCAGAATCCTAAWTTATTCAAGAAGAAGTTATTCATTAGGAATTTGAATGGACCTTATTGGAATCTGGTTATTTCTTATTCCTTTCATTTGGATTGTTTTTACACCAAAAATTTTTGTGTTAAAAGACAAAAAAAACAAAATCCCTATTTCCGGTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11887</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>799761</contig_pos>
        <strand>+</strand>
        <context>GGGAAAAACT[C/T]TTTTCCGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTACTCTCCATTTGGCGTATATGGTCCAATATATAGAGGTGGGAAAAACT</left_flank>
        <right_flank>TTTTCCGAAAAAAGTGGAGCCTTTAAGAATGGGGTGGTTCAAAGATCCTC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGATTCATGAAAACAAAAAGTCCTAAAATAAGGGATCTCAAAAAGTACTATTCGGGACCCCTATTTTTGAACTTTGAGCCAATTTATCTCGGTTCCTGCAAAAGATATAAAAAAGTTGTCAACTGATAAATTGCTTATCATAATATCACAATTTTTATTAGTTGACACTTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAAACTCGGGTTAGAACTAATAAAATTTTTTCCTCAGAATGAGAAGCGCACAAATGGCTCAAAAAGCGCAGTTGGCACCTCAATTAGCGGCTGCTGCACCAGTTCCTATGGACCCTTATCAGCAATATCTTCAATATCAAATGTACCAACAAATGGAGATGCCGCCTCAAGCAGCAGCACCCTACTCTCCATTTGGCGTATATGGTCCAATATATAGAGGTGGGAAAAACTTTTTTCCGAAAAAAGTGGAGCCTTTAAGAATGGGGTGGTTCAAAGATCCTCCTCCAGAATCCTAAATTATTCAAGAAGAAGTTATTCATTAGGAATTTGAATGGACCTTATTGGAATCTGGTTATTTCTTATTCCTTTCATTTGGATTGTTTTTACACCAAAAATTTTTGTGTTAAAAGACAAAAAAAACAAAATCCCTATTTCCGGTAATAAGATATTTTAATATTTTTTCCTTCGAATTGAAATTAAACTTCAATTTTAAATAAAAACAAGTCAAAGGGAAAAGACTAGGATATCCTTTCAGATAGATCCTTATCCCTGATGAATGAAAAAAGTGAATTTCAAACTTTGAAACCTCTCTCTTTTTCAACACGTGACCAAAAGCCACCTACTTTCTGGAAGTGACGAATTAGGGTGACATTTGCAATTGGCTATGAAAAAAGGCAGAAGTTGCAGAACAATTTTGGTGATTTGTGATTTCAGGAAGTCATAAAATGCATA</canonical>
            <polymorphic>TTGGATTCATGAAAACAAAAAGTCCTAAAATAAGGGATCTCAAAAAGTACTATTCGGGACCCCTATTTTTGAACTTTGAGCCAATTTATCTCGGTTCCTGCAAAAGATATAAAAAAGTTGTCAACTGATAAATTGCTTATCATAATATCACAATTTTTATTAGTTGACACTTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAAACTCGGGTTAGAACTAATAAAATTTTTTCCTCAGAATGAGAAGCGCACAAATGGCTCAAAAAGCGCAGTTGGCACCTCAATTAGCGGCTGCTGCACCAGTTCCTATGGACCCTTATCAGCAATATCTTCAATATCAAATGTACCAACAAATGGAGATGCCGCCTCAAGCAGCAGCACCCTACTCTCCATTTGGCGTATATGGTCCAATATATAGAGGTGGGAAAAACTYTTTTCCGAAAAAAGTGGAGCCTTTAAGAATGGGGTGGTTCAAAGATCCTCCTCCAGAATCCTAAATTATTCAAGAAGAAGTTATTCATTAGGAATTTGAATGGACCTTATTGGAATCTGGTTATTTCTTATTCCTTTCATTTGGATTGTTTTTACACCAAAAATTTTTGTGTTAAAAGACAAAAAAAACAAAATCCCTATTTCCGGTAATAAGATATTTTAATATTTTTTCCTTCGAATTGAAATTAAACTTCAATTTTAAATAAAAACAAGTCAAAGGGAAAAGACTAGGATATCCTTTCAGATAGATCCTTATCCCTGATGAATGAAAAAAGTGAATTTCAAACTTTGAAACCTCTCTCTTTTTCAACACGTGACCAAAAGCCACCTACTTTCTGGAAGTGACGAATTAGGGTGACATTTGCAATTGGCTATGAAAAAAGGCAGAAGTTGCAGAACAATTTTGGTGATTTGTGATTTCAGGAAGTCATAAAATGCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTCCTATGGACCCTTATC</pcr_primer_p1>
		<pcr_primer_p2>CCATTCAAATTCCTAATGAATAA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>CAGTTCCTATGGACCCTTATCAGCAATATCTTCAATATCAAATGTACCAACAAATGGAGATGCCGCCTCAAGCAGCAGCACCCTACTCTCCATTTGGCGTATATGGTCCAATATATAGAGGTGGGAAAAACTTTTTTCCGAAAAAAGTGGAGCCTTTAAGAATGGGGTGGTTCAAAGATCCTCCTCCAGAATCCTAAATTATTCAAGAAGAAGTTATTCATTAGGAATTTGAATGG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTCCTATGGACCCTTATCAGCAATATCTTCAATATCAAATGTACCAACAAATGGAGATGCCGCCTCAAGCAGCAGCACCCTACTCTCCATTTGGCGTATATGGTCCAATATATAGAGGTGGGAAAAACTYTTTTCCGAAAAAAGTGGAGCCTTTAAGAATGGGGTGGTTCAAAGATCCTCCTCCAGAATCCTAAATTATTCAAGAAGAAGTTATTCATTAGGAATTTGAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11888</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>799615</contig_pos>
        <strand>+</strand>
        <context>CACCTCAATT[A/G]GCGGCTGCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAATGAGAAGCGCACAAATGGCTCAAAAAGCGCAGTTGGCACCTCAATT</left_flank>
        <right_flank>GCGGCTGCTGCACCAGTTCCTATGGACCCTTATCAGCAATATCTTCAATA</right_flank>
        <qual_score>149</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGATTTTCGAAATTAGCCGTTTTCTGAAGATTCCATACTACAAATTGTTTATATCTAGATAAGAAAATGTGAGAACAACATTGGATTCTTCTTCGTATCCTTTGGAGATACAAGGAGCTGTAGTTAAACCCTGTTTTGAATTTTTTGGATTCATGAAAACAAAAAGTCCTAAAATAAGGGATCTCAAAAAGTACTATTCGGGACCCCTATTTTTGAACTTTGAGCCAATTTATCTCGGTTCCTGCAAAAGATATAAAAAAGTTGTCAACTGATAAATTGCTTATCATAATATCACAATTTTTATTAGTTGACACTTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAAACTCGGGTTAGAACTAATAAAATTTTTTCCTCAGAATGAGAAGCGCACAAATGGCTCAAAAAGCGCAGTTGGCACCTCAATTAGCGGCTGCTGCACCAGTTCCTATGGACCCTTATCAGCAATATCTTCAATATCAAATGTACCAACAAATGGAGATGCCGCCTCAAGCAGCAGCACCCTACTCTCCATTTGGCGTATATGGTCCAATATATAGAGGTGGGAAAAACTTTTTTCCGAAAAAAGTGGAGCCTTTAAGAATGGGGTGGTTCAAAGATCCTCCTCCAGAATCCTAAATTATTCAAGAAGAAGTTATTCATTAGGAATTTGAATGGACCTTATTGGAATCTGGTTATTTCTTATTCCTTTCATTTGGATTGTTTTTACACCAAAAATTTTTGTGTTAAAAGACAAAAAAAACAAAATCCCTATTTCCGGTAATAAGATATTTTAATATTTTTTCCTTCGAATTGAAATTAAACTTCAATTTTAAATAAAAACAAGTCAAAGGGAAAAGACTAGGATATCCTTTCAGATAGATCCTTATCCCTGATGAATGAAAAAAGTGAATTTCAAACTTTGAAAC</canonical>
            <polymorphic>ATTGATTTTCGAAATTAGCCGTTTTCTGAAGATTCCATACTACAAATTGTTTATATCTAGATAAGAAAATGTGAGAACAACATTGGATTCTTCTTCGTATCCTTTGGAGATACAAGGAGCTGTAGTTAAACCCTGTTTTGAATTTTTTGGATTCATGAAAACAAAAAGTCCTAAAATAAGGGATCTCAAAAAGTACTATTCGGGACCCCTATTTTTGAACTTTGAGCCAATTTATCTCGGTTCCTGCAAAAGATATAAAAAAGTTGTCAACTGATAAATTGCTTATCATAATATCACAATTTTTATTAGTTGACACTTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAAACTCGGGTTAGAACTAATAAAATTTTTTCCTCAGAATGAGAAGCGCACAAATGGCTCAAAAAGCGCAGTTGGCACCTCAATTRGCGGCTGCTGCACCAGTTCCTATGGACCCTTATCAGCAATATCTTCAATATCAAATGTACCAACAAATGGAGATGCCGCCTCAAGCAGCAGCACCCTACTCTCCATTTGGCGTATATGGTCCAATATATAGAGGTGGGAAAAACTTTTTTCCGAAAAAAGTGGAGCCTTTAAGAATGGGGTGGTTCAAAGATCCTCCTCCAGAATCCTAAATTATTCAAGAAGAAGTTATTCATTAGGAATTTGAATGGACCTTATTGGAATCTGGTTATTTCTTATTCCTTTCATTTGGATTGTTTTTACACCAAAAATTTTTGTGTTAAAAGACAAAAAAAACAAAATCCCTATTTCCGGTAATAAGATATTTTAATATTTTTTCCTTCGAATTGAAATTAAACTTCAATTTTAAATAAAAACAAGTCAAAGGGAAAAGACTAGGATATCCTTTCAGATAGATCCTTATCCCTGATGAATGAAAAAAGTGAATTTCAAACTTTGAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGATATTCAGATCGGTGTTAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTCCCACCTCTATATATTGGAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGATATTCAGATCGGTGTTAAAAACTCGGGTTAGAACTAATAAAATTTTTTCCTCAGAATGAGAAGCGCACAAATGGCTCAAAAAGCGCAGTTGGCACCTCAATTAGCGGCTGCTGCACCAGTTCCTATGGACCCTTATCAGCAATATCTTCAATATCAAATGTACCAACAAATGGAGATGCCGCCTCAAGCAGCAGCACCCTACTCTCCATTTGGCGTATATGGTCCAATATATAGAGGTGGGAAA</canonical_amplicon>
		<polymorphic_amplicon>AAGATATTCAGATCGGTGTTAAAAACTCGGGTTAGAACTAATAAAATTTTTTCCTCAGAATGAGAAGCGCACAAATGGCTCAAAAAGCGCAGTTGGCACCTCAATTRGCGGCTGCTGCACCAGTTCCTATGGACCCTTATCAGCAATATCTTCAATATCAAATGTACCAACAAATGGAGATGCCGCCTCAAGCAGCAGCACCCTACTCTCCATTTGGCGTATATGGTCCAATATATAGAGGTGGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11894</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>799890</contig_pos>
        <strand>+</strand>
        <context>GGTTATTTCT[G/T]ATTCCTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGTTATTCATTAGGAATTTGAATGGACCTTATTGGAATCTGGTTATTTCT</left_flank>
        <right_flank>ATTCCTTTCATTTGGATTGTTTTTACACCAAAAATTTTTGTGTTAAAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTGCTTATCATAATATCACAATTTTTATTAGTTGACACTTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAAACTCGGGTTAGAACTAATAAAATTTTTTCCTCAGAATGAGAAGCGCACAAATGGCTCAAAAAGCGCAGTTGGCACCTCAATTAGCGGCTGCTGCACCAGTTCCTATGGACCCTTATCAGCAATATCTTCAATATCAAATGTACCAACAAATGGAGATGCCGCCTCAAGCAGCAGCACCCTACTCTCCATTTGGCGTATATGGTCCAATATATAGAGGTGGGAAAAACTTTTTTCCGAAAAAAGTGGAGCCTTTAAGAATGGGGTGGTTCAAAGATCCTCCTCCAGAATCCTAAATTATTCAAGAAGAAGTTATTCATTAGGAATTTGAATGGACCTTATTGGAATCTGGTTATTTCTTATTCCTTTCATTTGGATTGTTTTTACACCAAAAATTTTTGTGTTAAAAGACAAAAAAAACAAAATCCCTATTTCCGGTAATAAGATATTTTAATATTTTTTCCTTCGAATTGAAATTAAACTTCAATTTTAAATAAAAACAAGTCAAAGGGAAAAGACTAGGATATCCTTTCAGATAGATCCTTATCCCTGATGAATGAAAAAAGTGAATTTCAAACTTTGAAACCTCTCTCTTTTTCAACACGTGACCAAAAGCCACCTACTTTCTGGAAGTGACGAATTAGGGTGACATTTGCAATTGGCTATGAAAAAAGGCAGAAGTTGCAGAACAATTTTGGTGATTTGTGATTTCAGGAAGTCATAAAATGCATAATACTTGAACCGATTTCTCATAGGTTTTCGATCAGTTAGAACTATTGAGAAGTCTCGTCCAAATTTATAGTAGTACTACAATAGAAGGGCCCCCAAATCATCAATTTTGAGCTCATATATCTCACTTCC</canonical>
            <polymorphic>AAATTGCTTATCATAATATCACAATTTTTATTAGTTGACACTTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAAACTCGGGTTAGAACTAATAAAATTTTTTCCTCAGAATGAGAAGCGCACAAATGGCTCAAAAAGCGCAGTTGGCACCTCAATTAGCGGCTGCTGCACCAGTTCCTATGGACCCTTATCAGCAATATCTTCAATATCAAATGTACCAACAAATGGAGATGCCGCCTCAAGCAGCAGCACCCTACTCTCCATTTGGCGTATATGGTCCAATATATAGAGGTGGGAAAAACTTTTTTCCGAAAAAAGTGGAGCCTTTAAGAATGGGGTGGTTCAAAGATCCTCCTCCAGAATCCTAAATTATTCAAGAAGAAGTTATTCATTAGGAATTTGAATGGACCTTATTGGAATCTGGTTATTTCTKATTCCTTTCATTTGGATTGTTTTTACACCAAAAATTTTTGTGTTAAAAGACAAAAAAAACAAAATCCCTATTTCCGGTAATAAGATATTTTAATATTTTTTCCTTCGAATTGAAATTAAACTTCAATTTTAAATAAAAACAAGTCAAAGGGAAAAGACTAGGATATCCTTTCAGATAGATCCTTATCCCTGATGAATGAAAAAAGTGAATTTCAAACTTTGAAACCTCTCTCTTTTTCAACACGTGACCAAAAGCCACCTACTTTCTGGAAGTGACGAATTAGGGTGACATTTGCAATTGGCTATGAAAAAAGGCAGAAGTTGCAGAACAATTTTGGTGATTTGTGATTTCAGGAAGTCATAAAATGCATAATACTTGAACCGATTTCTCATAGGTTTTCGATCAGTTAGAACTATTGAGAAGTCTCGTCCAAATTTATAGTAGTACTACAATAGAAGGGCCCCCAAATCATCAATTTTGAGCTCATATATCTCACTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAGTTATTCATTAGGAATTTGA</pcr_primer_p1>
		<pcr_primer_p2>TCATCAGGGATAAGGATCTATCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAAGTTATTCATTAGGAATTTGAATGGACCTTATTGGAATCTGGTTATTTCTTATTCCTTTCATTTGGATTGTTTTTACACCAAAAATTTTTGTGTTAAAAGACAAAAAAAACAAAATCCCTATTTCCGGTAATAAGATATTTTAATATTTTTTCCTTCGAATTGAAATTAAACTTCAATTTTAAATAAAAACAAGTCAAAGGGAAAAGACTAGGATATCCTTTCAGATAGATCCTTATCCCTGATGA</canonical_amplicon>
		<polymorphic_amplicon>AAGAAGTTATTCATTAGGAATTTGAATGGACCTTATTGGAATCTGGTTATTTCTKATTCCTTTCATTTGGATTGTTTTTACACCAAAAATTTTTGTGTTAAAAGACAAAAAAAACAAAATCCCTATTTCCGGTAATAAGATATTTTAATATTTTTTCCTTCGAATTGAAATTAAACTTCAATTTTAAATAAAAACAAGTCAAAGGGAAAAGACTAGGATATCCTTTCAGATAGATCCTTATCCCTGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11895</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>799916</contig_pos>
        <strand>+</strand>
        <context>ATTGTTTTTA[C/T]ACCAAAAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTTATTGGAATCTGGTTATTTCTTATTCCTTTCATTTGGATTGTTTTTA</left_flank>
        <right_flank>ACCAAAAATTTTTGTGTTAAAAGACAAAAAAAACAAAATCCCTATTTCCG</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTATTAGTTGACACTTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAAACTCGGGTTAGAACTAATAAAATTTTTTCCTCAGAATGAGAAGCGCACAAATGGCTCAAAAAGCGCAGTTGGCACCTCAATTAGCGGCTGCTGCACCAGTTCCTATGGACCCTTATCAGCAATATCTTCAATATCAAATGTACCAACAAATGGAGATGCCGCCTCAAGCAGCAGCACCCTACTCTCCATTTGGCGTATATGGTCCAATATATAGAGGTGGGAAAAACTTTTTTCCGAAAAAAGTGGAGCCTTTAAGAATGGGGTGGTTCAAAGATCCTCCTCCAGAATCCTAAATTATTCAAGAAGAAGTTATTCATTAGGAATTTGAATGGACCTTATTGGAATCTGGTTATTTCTTATTCCTTTCATTTGGATTGTTTTTACACCAAAAATTTTTGTGTTAAAAGACAAAAAAAACAAAATCCCTATTTCCGGTAATAAGATATTTTAATATTTTTTCCTTCGAATTGAAATTAAACTTCAATTTTAAATAAAAACAAGTCAAAGGGAAAAGACTAGGATATCCTTTCAGATAGATCCTTATCCCTGATGAATGAAAAAAGTGAATTTCAAACTTTGAAACCTCTCTCTTTTTCAACACGTGACCAAAAGCCACCTACTTTCTGGAAGTGACGAATTAGGGTGACATTTGCAATTGGCTATGAAAAAAGGCAGAAGTTGCAGAACAATTTTGGTGATTTGTGATTTCAGGAAGTCATAAAATGCATAATACTTGAACCGATTTCTCATAGGTTTTCGATCAGTTAGAACTATTGAGAAGTCTCGTCCAAATTTATAGTAGTACTACAATAGAAGGGCCCCCAAATCATCAATTTTGAGCTCATATATCTCACTTCCTGTGATAGATATCAAAACGTTGTTAA</canonical>
            <polymorphic>TTTATTAGTTGACACTTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAAACTCGGGTTAGAACTAATAAAATTTTTTCCTCAGAATGAGAAGCGCACAAATGGCTCAAAAAGCGCAGTTGGCACCTCAATTAGCGGCTGCTGCACCAGTTCCTATGGACCCTTATCAGCAATATCTTCAATATCAAATGTACCAACAAATGGAGATGCCGCCTCAAGCAGCAGCACCCTACTCTCCATTTGGCGTATATGGTCCAATATATAGAGGTGGGAAAAACTTTTTTCCGAAAAAAGTGGAGCCTTTAAGAATGGGGTGGTTCAAAGATCCTCCTCCAGAATCCTAAATTATTCAAGAAGAAGTTATTCATTAGGAATTTGAATGGACCTTATTGGAATCTGGTTATTTCTTATTCCTTTCATTTGGATTGTTTTTAYACCAAAAATTTTTGTGTTAAAAGACAAAAAAAACAAAATCCCTATTTCCGGTAATAAGATATTTTAATATTTTTTCCTTCGAATTGAAATTAAACTTCAATTTTAAATAAAAACAAGTCAAAGGGAAAAGACTAGGATATCCTTTCAGATAGATCCTTATCCCTGATGAATGAAAAAAGTGAATTTCAAACTTTGAAACCTCTCTCTTTTTCAACACGTGACCAAAAGCCACCTACTTTCTGGAAGTGACGAATTAGGGTGACATTTGCAATTGGCTATGAAAAAAGGCAGAAGTTGCAGAACAATTTTGGTGATTTGTGATTTCAGGAAGTCATAAAATGCATAATACTTGAACCGATTTCTCATAGGTTTTCGATCAGTTAGAACTATTGAGAAGTCTCGTCCAAATTTATAGTAGTACTACAATAGAAGGGCCCCCAAATCATCAATTTTGAGCTCATATATCTCACTTCCTGTGATAGATATCAAAACGTTGTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>165 149 120 96 81 53 52 43 35 27 26 22 21 20 17 15 14 13 11 9 7 4</canonical_bands>
                <polymorphic_bands>165 149 135 96 81 53 52 43 35 27 26 22 21 20 17 14 13 11 9 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAAGTTATTCATTAGGAATTTGA</pcr_primer_p1>
		<pcr_primer_p2>TCATCAGGGATAAGGATCTATCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAAGTTATTCATTAGGAATTTGAATGGACCTTATTGGAATCTGGTTATTTCTTATTCCTTTCATTTGGATTGTTTTTACACCAAAAATTTTTGTGTTAAAAGACAAAAAAAACAAAATCCCTATTTCCGGTAATAAGATATTTTAATATTTTTTCCTTCGAATTGAAATTAAACTTCAATTTTAAATAAAAACAAGTCAAAGGGAAAAGACTAGGATATCCTTTCAGATAGATCCTTATCCCTGATGA</canonical_amplicon>
		<polymorphic_amplicon>AAGAAGTTATTCATTAGGAATTTGAATGGACCTTATTGGAATCTGGTTATTTCTTATTCCTTTCATTTGGATTGTTTTTAYACCAAAAATTTTTGTGTTAAAAGACAAAAAAAACAAAATCCCTATTTCCGGTAATAAGATATTTTAATATTTTTTCCTTCGAATTGAAATTAAACTTCAATTTTAAATAAAAACAAGTCAAAGGGAAAAGACTAGGATATCCTTTCAGATAGATCCTTATCCCTGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11897</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>801939</contig_pos>
        <strand></strand>
        <context>gaaatacttt[A/G]aatttgatcc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTAGATTTAAAATGAGCTAAATTGGCTGTGAAAAGGTTCGAAATACTTT</left_flank>
        <right_flank>AATTTGATCCAGAACCAATTTAGAATGGTCTGAAATAGTTCAAATTTGAT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGCTGGTTTTGAGAGTTTTAAAACATTTTCAAGAGCCTGGAGCTCGACTGTCAAGTTTCCGATCACTTGGAAAATTCTGGAGGATGTAAAACACTTGGAAAATTCTGGAGGATGTAAAATGTAAACTTACAGAATTTTTTGAAAATTCCTAGCTTTTCAGCAGTTTGCCGACACCATTTTTCGGCCAATTTACTAACGGAAAAGATGAAAAAACAGGAGCTTTTCGAAAATCGGCAAATATCTGAAAAGCTAGGAATTTTCGAAAAACTCTCTGAATGCAATGTTCTCAATCTTGGTCTGCTGTATAAAATCTAGAAAATTGTGTTAAAACAGTTGAAAAACGCTCAAAATATTGCAAAAAACGGCTAAAATCTTGAAATTAGAGCCTTAACTCTGCCTAAAATCGCCTGAACTAGTTTAAGTTGACTTTAAAGGCCCAAGACCGAAATTAGATTTAAAATGAGCTAAATTGGCTGTGAAAAGGTTCGAAATACTTTAAATTTGATCCAGAACCAATTTAGAATGGTCTGAAATAGTTCAAATTTGATCATAATATGCCAGGTGTTTTCCAAAAACTCTATGAATACAAGGTTTCAATCTAGGTCTGCTTAAAGGTTGGGGTACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGAGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAGCGGAATTTCGAGAACATTTTTTTTCATGTCCCCCCACCTTTAAAAACTCCAAAATTTTCAAAGTGATCGTAAATTTTACAGCAGAGCTCCAGACTCTAGACAATGGTCAAAATGGCCAAAAATCAACTTTTTTGTATCTTACTGACTGGTACTGTATATC</canonical>
            <polymorphic>TCAGCTGGTTTTGAGAGTTTTAAAACATTTTCAAGAGCCTGGAGCTCGACTGTCAAGTTTCCGATCACTTGGAAAATTCTGGAGGATGTAAAACACTTGGAAAATTCTGGAGGATGTAAAATGTAAACTTACAGAATTTTTTGAAAATTCCTAGCTTTTCAGCAGTTTGCCGACACCATTTTTCGGCCAATTTACTAACGGAAAAGATGAAAAAACAGGAGCTTTTCGAAAATCGGCAAATATCTGAAAAGCTAGGAATTTTCGAAAAACTCTCTGAATGCAATGTTCTCAATCTTGGTCTGCTGTATAAAATCTAGAAAATTGTGTTAAAACAGTTGAAAAACGCTCAAAATATTGCAAAAAACGGCTAAAATCTTGAAATTAGAGCCTTAACTCTGCCTAAAATCGCCTGAACTAGTTTAAGTTGACTTTAAAGGCCCAAGACCGAAATTAGATTTAAAATGAGCTAAATTGGCTGTGAAAAGGTTCGAAATACTTTRAATTTGATCCAGAACCAATTTAGAATGGTCTGAAATAGTTCAAATTTGATCATAATATGCCAGGTGTTTTCCAAAAACTCTATGAATACAAGGTTTCAATCTAGGTCTGCTTAAAGGTTGGGGTACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGAGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAGCGGAATTTCGAGAACATTTTTTTTCATGTCCCCCCACCTTTAAAAACTCCAAAATTTTCAAAGTGATCGTAAATTTTACAGCAGAGCTCCAGACTCTAGACAATGGTCAAAATGGCCAAAAATCAACTTTTTTGTATCTTACTGACTGGTACTGTATATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>301 244 111 89 74 49 42 32 28 19 11</canonical_bands>
                <polymorphic_bands>301 286 111 89 74 49 32 28 19 11</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>411 382 119 41 26 21</canonical_bands>
                <polymorphic_bands>423 411 119 26 21</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>307 190 120 113 79 63 41 30 26 20 11</canonical_bands>
                <polymorphic_bands>307 190 154 120 79 63 30 26 20 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCTTTTGGCTCTAGATTTTTAT</pcr_primer_p1>
		<pcr_primer_p2>AACTACGAAAAATCTCCTGTACC</pcr_primer_p2>
		<pcr_amplicon_size>706</pcr_amplicon_size>
		<canonical_amplicon>TAAATTTGATCCAGAACCAATTTAGAATGGTCTGAAATAGTTCAAATTTGATCATAATATGCCAGGTGTTTTCCAAAAACTCTATGAATACAAGGTTTCAATCTAGGTCTGCTTAAAGGTTGGGGTACAGGAGATTTTTCGTAGTT</canonical_amplicon>
		<polymorphic_amplicon>TRAATTTGATCCAGAACCAATTTAGAATGGTCTGAAATAGTTCAAATTTGATCATAATATGCCAGGTGTTTTCCAAAAACTCTATGAATACAAGGTTTCAATCTAGGTCTGCTTAAAGGTTGGGGTACAGGAGATTTTTCGTAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11898</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>801826</contig_pos>
        <strand></strand>
        <context>tgaaattaga[G/A]ccttaactct</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGAAAAACGCTCAAAATATTGCAAAAAACGGCTAAAATCTTGAAATTAGA</left_flank>
        <right_flank>CCTTAACTCTGCCTAAAATCGCCTGAACTAGTTTAAGTTGACTTTAAAGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGGCAAGATTGTTCTTAATTTCAGAGATGAAAAGCTTAAAGATTTTGTGAAGCTTTTGGCTCTAGATTTTTATAGACTTTGCCGCTTGATCAGATACAAAAAACTCGTGTTTTCAGCTGGTTTTGAGAGTTTTAAAACATTTTCAAGAGCCTGGAGCTCGACTGTCAAGTTTCCGATCACTTGGAAAATTCTGGAGGATGTAAAACACTTGGAAAATTCTGGAGGATGTAAAATGTAAACTTACAGAATTTTTTGAAAATTCCTAGCTTTTCAGCAGTTTGCCGACACCATTTTTCGGCCAATTTACTAACGGAAAAGATGAAAAAACAGGAGCTTTTCGAAAATCGGCAAATATCTGAAAAGCTAGGAATTTTCGAAAAACTCTCTGAATGCAATGTTCTCAATCTTGGTCTGCTGTATAAAATCTAGAAAATTGTGTTAAAACAGTTGAAAAACGCTCAAAATATTGCAAAAAACGGCTAAAATCTTGAAATTAGAGCCTTAACTCTGCCTAAAATCGCCTGAACTAGTTTAAGTTGACTTTAAAGGCCCAAGACCGAAATTAGATTTAAAATGAGCTAAATTGGCTGTGAAAAGGTTCGAAATACTTTAAATTTGATCCAGAACCAATTTAGAATGGTCTGAAATAGTTCAAATTTGATCATAATATGCCAGGTGTTTTCCAAAAACTCTATGAATACAAGGTTTCAATCTAGGTCTGCTTAAAGGTTGGGGTACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGAGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAGCGGAATTTCGAGAACATTTTTTTTCATGTCCCCCCACCTTTAAAAAC</canonical>
            <polymorphic>GGGGCAAGATTGTTCTTAATTTCAGAGATGAAAAGCTTAAAGATTTTGTGAAGCTTTTGGCTCTAGATTTTTATAGACTTTGCCGCTTGATCAGATACAAAAAACTCGTGTTTTCAGCTGGTTTTGAGAGTTTTAAAACATTTTCAAGAGCCTGGAGCTCGACTGTCAAGTTTCCGATCACTTGGAAAATTCTGGAGGATGTAAAACACTTGGAAAATTCTGGAGGATGTAAAATGTAAACTTACAGAATTTTTTGAAAATTCCTAGCTTTTCAGCAGTTTGCCGACACCATTTTTCGGCCAATTTACTAACGGAAAAGATGAAAAAACAGGAGCTTTTCGAAAATCGGCAAATATCTGAAAAGCTAGGAATTTTCGAAAAACTCTCTGAATGCAATGTTCTCAATCTTGGTCTGCTGTATAAAATCTAGAAAATTGTGTTAAAACAGTTGAAAAACGCTCAAAATATTGCAAAAAACGGCTAAAATCTTGAAATTAGARCCTTAACTCTGCCTAAAATCGCCTGAACTAGTTTAAGTTGACTTTAAAGGCCCAAGACCGAAATTAGATTTAAAATGAGCTAAATTGGCTGTGAAAAGGTTCGAAATACTTTAAATTTGATCCAGAACCAATTTAGAATGGTCTGAAATAGTTCAAATTTGATCATAATATGCCAGGTGTTTTCCAAAAACTCTATGAATACAAGGTTTCAATCTAGGTCTGCTTAAAGGTTGGGGTACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGAGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAGCGGAATTTCGAGAACATTTTTTTTCATGTCCCCCCACCTTTAAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>178 119 116 110 58 57 57 50 35 35 33 32 30 29 20 18 9 7 7</canonical_bands>
                <polymorphic_bands>178 119 116 110 70 58 57 57 35 35 33 32 30 29 18 9 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCTTTTGGCTCTAGATTTTTAT</pcr_primer_p1>
		<pcr_primer_p2>AACTACGAAAAATCTCCTGTACC</pcr_primer_p2>
		<pcr_amplicon_size>706</pcr_amplicon_size>
		<canonical_amplicon>AGCTTTTGGCTCTAGATTTTTATAGACTTTGCCGCTTGATCAGATACAAAAAACTCGTGTTTTCAGCTGGTTTTGAGAGTTTTAAAACATTTTCAAGAGCCTGGAGCTCGACTGTCAAGTTTCCGATCACTTGGAAAATTCTGGAGGATGTAAAACACTTGGAAAATTCTGGAGGATGTAAAATGTAAACTTACAGAATTTTTTGAAAATTCCTAGCTTTTCAGCAGTTTGCCGACACCATTTTTCGGCCAATTTACTAACGGAAAAGATGAAAAAACAGGAGCTTTTCGAAAATCGGCAAATATCTGAAAAGCTAGGAATTTTCGAAAAACTCTCTGAATGCAATGTTCTCAATCTTGGTCTGCTGTATAAAATCTAGAAAATTGTGTTAAAACAGTTGAAAAACGCTCAAAATATTGCAAAAAACGGCTAAAATCTTGAAATTAGAGCCTTAACTCTGCCTAAAATCGCCTGAACTAGTTTAAGTTGACTTTAAAGGCCCAAGACCGAAATTAGATTTAAAATGAGCTAAATTGGCTGTGAAAAGGTTCGAAATACTTTAAATTTGATCCAGAACCAATTTAGAATGGTCTGAAATAGTTCAAATTTGATCATAATATGCCAGGTGTTTTCCAAAAACTCTATGAATACAAGGTTTCAATCTAGGTCTGCTTAAAGGTTGGGGTACAGGAGATTTTTCGTAGTT</canonical_amplicon>
		<polymorphic_amplicon>AGCTTTTGGCTCTAGATTTTTATAGACTTTGCCGCTTGATCAGATACAAAAAACTCGTGTTTTCAGCTGGTTTTGAGAGTTTTAAAACATTTTCAAGAGCCTGGAGCTCGACTGTCAAGTTTCCGATCACTTGGAAAATTCTGGAGGATGTAAAACACTTGGAAAATTCTGGAGGATGTAAAATGTAAACTTACAGAATTTTTTGAAAATTCCTAGCTTTTCAGCAGTTTGCCGACACCATTTTTCGGCCAATTTACTAACGGAAAAGATGAAAAAACAGGAGCTTTTCGAAAATCGGCAAATATCTGAAAAGCTAGGAATTTTCGAAAAACTCTCTGAATGCAATGTTCTCAATCTTGGTCTGCTGTATAAAATCTAGAAAATTGTGTTAAAACAGTTGAAAAACGCTCAAAATATTGCAAAAAACGGCTAAAATCTTGAAATTAGARCCTTAACTCTGCCTAAAATCGCCTGAACTAGTTTAAGTTGACTTTAAAGGCCCAAGACCGAAATTAGATTTAAAATGAGCTAAATTGGCTGTGAAAAGGTTCGAAATACTTTAAATTTGATCCAGAACCAATTTAGAATGGTCTGAAATAGTTCAAATTTGATCATAATATGCCAGGTGTTTTCCAAAAACTCTATGAATACAAGGTTTCAATCTAGGTCTGCTTAAAGGTTGGGGTACAGGAGATTTTTCGTAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11899</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>801813</contig_pos>
        <strand></strand>
        <context>acggctaaaa[T/A]cttgaaatta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GTGTTAAAACAGTTGAAAAACGCTCAAAATATTGCAAAAAACGGCTAAAA</left_flank>
        <right_flank>CTTGAAATTAGAGCCTTAACTCTGCCTAAAATCGCCTGAACTAGTTTAAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAACGCCGGAAGGGGGCAAGATTGTTCTTAATTTCAGAGATGAAAAGCTTAAAGATTTTGTGAAGCTTTTGGCTCTAGATTTTTATAGACTTTGCCGCTTGATCAGATACAAAAAACTCGTGTTTTCAGCTGGTTTTGAGAGTTTTAAAACATTTTCAAGAGCCTGGAGCTCGACTGTCAAGTTTCCGATCACTTGGAAAATTCTGGAGGATGTAAAACACTTGGAAAATTCTGGAGGATGTAAAATGTAAACTTACAGAATTTTTTGAAAATTCCTAGCTTTTCAGCAGTTTGCCGACACCATTTTTCGGCCAATTTACTAACGGAAAAGATGAAAAAACAGGAGCTTTTCGAAAATCGGCAAATATCTGAAAAGCTAGGAATTTTCGAAAAACTCTCTGAATGCAATGTTCTCAATCTTGGTCTGCTGTATAAAATCTAGAAAATTGTGTTAAAACAGTTGAAAAACGCTCAAAATATTGCAAAAAACGGCTAAAATCTTGAAATTAGAGCCTTAACTCTGCCTAAAATCGCCTGAACTAGTTTAAGTTGACTTTAAAGGCCCAAGACCGAAATTAGATTTAAAATGAGCTAAATTGGCTGTGAAAAGGTTCGAAATACTTTAAATTTGATCCAGAACCAATTTAGAATGGTCTGAAATAGTTCAAATTTGATCATAATATGCCAGGTGTTTTCCAAAAACTCTATGAATACAAGGTTTCAATCTAGGTCTGCTTAAAGGTTGGGGTACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGAGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAGCGGAATTTCGAGAACATTTTTTTTCATGTCCCCC</canonical>
            <polymorphic>CGAACGCCGGAAGGGGGCAAGATTGTTCTTAATTTCAGAGATGAAAAGCTTAAAGATTTTGTGAAGCTTTTGGCTCTAGATTTTTATAGACTTTGCCGCTTGATCAGATACAAAAAACTCGTGTTTTCAGCTGGTTTTGAGAGTTTTAAAACATTTTCAAGAGCCTGGAGCTCGACTGTCAAGTTTCCGATCACTTGGAAAATTCTGGAGGATGTAAAACACTTGGAAAATTCTGGAGGATGTAAAATGTAAACTTACAGAATTTTTTGAAAATTCCTAGCTTTTCAGCAGTTTGCCGACACCATTTTTCGGCCAATTTACTAACGGAAAAGATGAAAAAACAGGAGCTTTTCGAAAATCGGCAAATATCTGAAAAGCTAGGAATTTTCGAAAAACTCTCTGAATGCAATGTTCTCAATCTTGGTCTGCTGTATAAAATCTAGAAAATTGTGTTAAAACAGTTGAAAAACGCTCAAAATATTGCAAAAAACGGCTAAAAWCTTGAAATTAGAGCCTTAACTCTGCCTAAAATCGCCTGAACTAGTTTAAGTTGACTTTAAAGGCCCAAGACCGAAATTAGATTTAAAATGAGCTAAATTGGCTGTGAAAAGGTTCGAAATACTTTAAATTTGATCCAGAACCAATTTAGAATGGTCTGAAATAGTTCAAATTTGATCATAATATGCCAGGTGTTTTCCAAAAACTCTATGAATACAAGGTTTCAATCTAGGTCTGCTTAAAGGTTGGGGTACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGAGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAGCGGAATTTCGAGAACATTTTTTTTCATGTCCCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>230 207 134 110 82 76 61 47 28 25</canonical_bands>
                <polymorphic_bands>230 207 195 110 82 76 47 28 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCTTTTGGCTCTAGATTTTTAT</pcr_primer_p1>
		<pcr_primer_p2>AACTACGAAAAATCTCCTGTACC</pcr_primer_p2>
		<pcr_amplicon_size>706</pcr_amplicon_size>
		<canonical_amplicon>AGCTTTTGGCTCTAGATTTTTATAGACTTTGCCGCTTGATCAGATACAAAAAACTCGTGTTTTCAGCTGGTTTTGAGAGTTTTAAAACATTTTCAAGAGCCTGGAGCTCGACTGTCAAGTTTCCGATCACTTGGAAAATTCTGGAGGATGTAAAACACTTGGAAAATTCTGGAGGATGTAAAATGTAAACTTACAGAATTTTTTGAAAATTCCTAGCTTTTCAGCAGTTTGCCGACACCATTTTTCGGCCAATTTACTAACGGAAAAGATGAAAAAACAGGAGCTTTTCGAAAATCGGCAAATATCTGAAAAGCTAGGAATTTTCGAAAAACTCTCTGAATGCAATGTTCTCAATCTTGGTCTGCTGTATAAAATCTAGAAAATTGTGTTAAAACAGTTGAAAAACGCTCAAAATATTGCAAAAAACGGCTAAAATCTTGAAATTAGAGCCTTAACTCTGCCTAAAATCGCCTGAACTAGTTTAAGTTGACTTTAAAGGCCCAAGACCGAAATTAGATTTAAAATGAGCTAAATTGGCTGTGAAAAGGTTCGAAATACTTTAAATTTGATCCAGAACCAATTTAGAATGGTCTGAAATAGTTCAAATTTGATCATAATATGCCAGGTGTTTTCCAAAAACTCTATGAATACAAGGTTTCAATCTAGGTCTGCTTAAAGGTTGGGGTACAGGAGATTTTTCGTAGTT</canonical_amplicon>
		<polymorphic_amplicon>AGCTTTTGGCTCTAGATTTTTATAGACTTTGCCGCTTGATCAGATACAAAAAACTCGTGTTTTCAGCTGGTTTTGAGAGTTTTAAAACATTTTCAAGAGCCTGGAGCTCGACTGTCAAGTTTCCGATCACTTGGAAAATTCTGGAGGATGTAAAACACTTGGAAAATTCTGGAGGATGTAAAATGTAAACTTACAGAATTTTTTGAAAATTCCTAGCTTTTCAGCAGTTTGCCGACACCATTTTTCGGCCAATTTACTAACGGAAAAGATGAAAAAACAGGAGCTTTTCGAAAATCGGCAAATATCTGAAAAGCTAGGAATTTTCGAAAAACTCTCTGAATGCAATGTTCTCAATCTTGGTCTGCTGTATAAAATCTAGAAAATTGTGTTAAAACAGTTGAAAAACGCTCAAAATATTGCAAAAAACGGCTAAAAWCTTGAAATTAGAGCCTTAACTCTGCCTAAAATCGCCTGAACTAGTTTAAGTTGACTTTAAAGGCCCAAGACCGAAATTAGATTTAAAATGAGCTAAATTGGCTGTGAAAAGGTTCGAAATACTTTAAATTTGATCCAGAACCAATTTAGAATGGTCTGAAATAGTTCAAATTTGATCATAATATGCCAGGTGTTTTCCAAAAACTCTATGAATACAAGGTTTCAATCTAGGTCTGCTTAAAGGTTGGGGTACAGGAGATTTTTCGTAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11901</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>803598</contig_pos>
        <strand>+</strand>
        <context>AAGCGCTGAA[A/G]CACTTGTCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCCGAACTCACTTGCAAGTCTCTCTTGGCATTTCCAGACAAGCGCTGAA</left_flank>
        <right_flank>CACTTGTCAATGCTCAAATTCCTTAGGGAAAGCAGTGGTCGAGCGAATAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTCAGGAATATCAGCCTTAGATTGAGACGCCAGAATACATTCCTTGTCTTTTTCATAGTACATTGCACTTTTACAGGTCACATCGTATTTAGTTTGAGCATTCGTGCATTGCGCTTGACAGTCAGCAACCGTTGCCACGTCACGAACCAATTGATCCACAATTCCAATCAACACCTTTCCAGGGGTAGATGTGTAACACCCTGATTCGGTGGCCACAGTATCCCTTCTAATTGCAACACTTGGCTTATCAAAGCAGTTCCGATGGTAGAAATCTGACATGGGATTCTTCACTATTTTTACATCTTGCTTAGATTTTCCGTTCAGCTGACAATTAGAAGTTTTCTTGGTATACGTGATTGACCTGAAAAAATGATCTGGTTTTTGAAGAATTTGTCATTCTAAATCTGAACTGGAAATTCTGAAAAATGCTTCCAGGAATCCAGAAATTCCCGAACTCACTTGCAAGTCTCTCTTGGCATTTCCAGACAAGCGCTGAAACACTTGTCAATGCTCAAATTCCTTAGGGAAAGCAGTGGTCGAGCGAATAGAGATCTGTTCGGAGTTTTATCAAAACACATTCTCATTGATGACGTGGCATTTGGAAGGAGAATAAGAAGTGGAAGAAGGAAACGCATATTCTGAAGAAGTGAGGAAGAAGTGAATGAAAAAGGATTTTCAGGAAAAAGAAGATTCACCTACTAAACAAATAAAGGGGAAAACAAGAAACTTTCGAATGTGACCGTGAAGAGATCGGTTCACTGGAACTTTTGGATTCTGGAGGAAAAAAATGCAAAGGGCTTTCCTTATTTTGTGATGTTTTTACTCGTCTACCAATTTTAGTACCAGACCCCAAACCCCGGACTTTTGATACTTTGGAAACTAATTTTGCATTTCTAAATTAGTTTTTTGACACCCAACTTCAAATTTTTGCTATTTTTCGAACATTGACCACAACTCAGAAACAAAAAGTGTATCAAAAAGAGTGAGAGCACAAAATG</canonical>
            <polymorphic>AAGTCAGGAATATCAGCCTTAGATTGAGACGCCAGAATACATTCCTTGTCTTTTTCATAGTACATTGCACTTTTACAGGTCACATCGTATTTAGTTTGAGCATTCGTGCATTGCGCTTGACAGTCAGCAACCGTTGCCACGTCACGAACCAATTGATCCACAATTCCAATCAACACCTTTCCAGGGGTAGATGTGTAACACCCTGATTCGGTGGCCACAGTATCCCTTCTAATTGCAACACTTGGCTTATCAAAGCAGTTCCGATGGTAGAAATCTGACATGGGATTCTTCACTATTTTTACATCTTGCTTAGATTTTCCGTTCAGCTGACAATTAGAAGTTTTCTTGGTATACGTGATTGACCTGAAAAAATGATCTGGTTTTTGAAGAATTTGTCATTCTAAATCTGAACTGGAAATTCTGAAAAATGCTTCCAGGAATCCAGAAATTCCCGAACTCACTTGCAAGTCTCTCTTGGCATTTCCAGACAAGCGCTGAARCACTTGTCAATGCTCAAATTCCTTAGGGAAAGCAGTGGTCGAGCGAATAGAGATCTGTTCGGAGTTTTATCAAAACACATTCTCATTGATGACGTGGCATTTGGAAGGAGAATAAGAAGTGGAAGAAGGAAACGCATATTCTGAAGAAGTGAGGAAGAAGTGAATGAAAAAGGATTTTCAGGAAAAAGAAGATTCACCTACTAAACAAATAAAGGGGAAAACAAGAAACTTTCGAATGTGACCGTGAAGAGATCGGTTCACTGGAACTTTTGGATTCTGGAGGAAAAAAATGCAAAGGGCTTTCCTTATTTTGTGATGTTTTTACTCGTCTACCAATTTTAGTACCAGACCCCAAACCCCGGACTTTTGATACTTTGGAAACTAATTTTGCATTTCTAAATTAGTTTTTTGACACCCAACTTCAAATTTTTGCTATTTTTCGAACATTGACCACAACTCAGAAACAAAAAGTGTATCAAAAAGAGTGAGAGCACAAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTTTCTTGGTATACGTGATTG</pcr_primer_p1>
		<pcr_primer_p2>TCAATGAGAATGTGTTTTGATAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGTTTTCTTGGTATACGTGATTGACCTGAAAAAATGATCTGGTTTTTGAAGAATTTGTCATTCTAAATCTGAACTGGAAATTCTGAAAAATGCTTCCAGGAATCCAGAAATTCCCGAACTCACTTGCAAGTCTCTCTTGGCATTTCCAGACAAGCGCTGAAACACTTGTCAATGCTCAAATTCCTTAGGGAAAGCAGTGGTCGAGCGAATAGAGATCTGTTCGGAGTTTTATCAAAACACATTCTCATTGA</canonical_amplicon>
		<polymorphic_amplicon>AGTTTTCTTGGTATACGTGATTGACCTGAAAAAATGATCTGGTTTTTGAAGAATTTGTCATTCTAAATCTGAACTGGAAATTCTGAAAAATGCTTCCAGGAATCCAGAAATTCCCGAACTCACTTGCAAGTCTCTCTTGGCATTTCCAGACAAGCGCTGAARCACTTGTCAATGCTCAAATTCCTTAGGGAAAGCAGTGGTCGAGCGAATAGAGATCTGTTCGGAGTTTTATCAAAACACATTCTCATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11902</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>803711</contig_pos>
        <strand>+</strand>
        <context>GGAAGGAGAA[G/T]AAGAAGTGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGTTTTATCAAAACACATTCTCATTGATGACGTGGCATTTGGAAGGAGAA</left_flank>
        <right_flank>AAGAAGTGGAAGAAGGAAACGCATATTCTGAAGAAGTGAGGAAGAAGTGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCTTGACAGTCAGCAACCGTTGCCACGTCACGAACCAATTGATCCACAATTCCAATCAACACCTTTCCAGGGGTAGATGTGTAACACCCTGATTCGGTGGCCACAGTATCCCTTCTAATTGCAACACTTGGCTTATCAAAGCAGTTCCGATGGTAGAAATCTGACATGGGATTCTTCACTATTTTTACATCTTGCTTAGATTTTCCGTTCAGCTGACAATTAGAAGTTTTCTTGGTATACGTGATTGACCTGAAAAAATGATCTGGTTTTTGAAGAATTTGTCATTCTAAATCTGAACTGGAAATTCTGAAAAATGCTTCCAGGAATCCAGAAATTCCCGAACTCACTTGCAAGTCTCTCTTGGCATTTCCAGACAAGCGCTGAAACACTTGTCAATGCTCAAATTCCTTAGGGAAAGCAGTGGTCGAGCGAATAGAGATCTGTTCGGAGTTTTATCAAAACACATTCTCATTGATGACGTGGCATTTGGAAGGAGAATAAGAAGTGGAAGAAGGAAACGCATATTCTGAAGAAGTGAGGAAGAAGTGAATGAAAAAGGATTTTCAGGAAAAAGAAGATTCACCTACTAAACAAATAAAGGGGAAAACAAGAAACTTTCGAATGTGACCGTGAAGAGATCGGTTCACTGGAACTTTTGGATTCTGGAGGAAAAAAATGCAAAGGGCTTTCCTTATTTTGTGATGTTTTTACTCGTCTACCAATTTTAGTACCAGACCCCAAACCCCGGACTTTTGATACTTTGGAAACTAATTTTGCATTTCTAAATTAGTTTTTTGACACCCAACTTCAAATTTTTGCTATTTTTCGAACATTGACCACAACTCAGAAACAAAAAGTGTATCAAAAAGAGTGAGAGCACAAAATGGGTTATGAGAAAAGTTGATTATAAATGACGGAGGTTTTCGAATATTTCGTTTTAGAACAAACTGAATTTAAAACGTATTTTTGGGTGTCATAGATTTGAGTGTTATGCTGAAT</canonical>
            <polymorphic>CGCTTGACAGTCAGCAACCGTTGCCACGTCACGAACCAATTGATCCACAATTCCAATCAACACCTTTCCAGGGGTAGATGTGTAACACCCTGATTCGGTGGCCACAGTATCCCTTCTAATTGCAACACTTGGCTTATCAAAGCAGTTCCGATGGTAGAAATCTGACATGGGATTCTTCACTATTTTTACATCTTGCTTAGATTTTCCGTTCAGCTGACAATTAGAAGTTTTCTTGGTATACGTGATTGACCTGAAAAAATGATCTGGTTTTTGAAGAATTTGTCATTCTAAATCTGAACTGGAAATTCTGAAAAATGCTTCCAGGAATCCAGAAATTCCCGAACTCACTTGCAAGTCTCTCTTGGCATTTCCAGACAAGCGCTGAAACACTTGTCAATGCTCAAATTCCTTAGGGAAAGCAGTGGTCGAGCGAATAGAGATCTGTTCGGAGTTTTATCAAAACACATTCTCATTGATGACGTGGCATTTGGAAGGAGAAKAAGAAGTGGAAGAAGGAAACGCATATTCTGAAGAAGTGAGGAAGAAGTGAATGAAAAAGGATTTTCAGGAAAAAGAAGATTCACCTACTAAACAAATAAAGGGGAAAACAAGAAACTTTCGAATGTGACCGTGAAGAGATCGGTTCACTGGAACTTTTGGATTCTGGAGGAAAAAAATGCAAAGGGCTTTCCTTATTTTGTGATGTTTTTACTCGTCTACCAATTTTAGTACCAGACCCCAAACCCCGGACTTTTGATACTTTGGAAACTAATTTTGCATTTCTAAATTAGTTTTTTGACACCCAACTTCAAATTTTTGCTATTTTTCGAACATTGACCACAACTCAGAAACAAAAAGTGTATCAAAAAGAGTGAGAGCACAAAATGGGTTATGAGAAAAGTTGATTATAAATGACGGAGGTTTTCGAATATTTCGTTTTAGAACAAACTGAATTTAAAACGTATTTTTGGGTGTCATAGATTTGAGTGTTATGCTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGTCTCTCTTGGCATTTC</pcr_primer_p1>
		<pcr_primer_p2>CCCTTTATTTGTTTAGTAGGTGA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAAGTCTCTCTTGGCATTTCCAGACAAGCGCTGAAACACTTGTCAATGCTCAAATTCCTTAGGGAAAGCAGTGGTCGAGCGAATAGAGATCTGTTCGGAGTTTTATCAAAACACATTCTCATTGATGACGTGGCATTTGGAAGGAGAATAAGAAGTGGAAGAAGGAAACGCATATTCTGAAGAAGTGAGGAAGAAGTGAATGAAAAAGGATTTTCAGGAAAAAGAAGATTCACCTACTAAACAAATAAAGGG</canonical_amplicon>
		<polymorphic_amplicon>CAAGTCTCTCTTGGCATTTCCAGACAAGCGCTGAAACACTTGTCAATGCTCAAATTCCTTAGGGAAAGCAGTGGTCGAGCGAATAGAGATCTGTTCGGAGTTTTATCAAAACACATTCTCATTGATGACGTGGCATTTGGAAGGAGAAKAAGAAGTGGAAGAAGGAAACGCATATTCTGAAGAAGTGAGGAAGAAGTGAATGAAAAAGGATTTTCAGGAAAAAGAAGATTCACCTACTAAACAAATAAAGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11903</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>829023</contig_pos>
        <strand></strand>
        <context>TCACTAGAGA[A/G]GGGGAKTTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTTTCCTCCTCGTTCTTTTTTTTGAATTTCGAAATGTTTCACTAGAGA</left_flank>
        <right_flank>GGGGATTTGGAAAACGAGAAGGAAGTGATGTGCTCCTTTTCTCTCCCAGA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGCAAGTCGTAGGTTGACGCTGTTTGAATCATACCGTAAACCCTGTAATAGAAGAGCCCCTACACTTTCAAACTTGAGCTCAATTATCTCGGTTCCTTTGAAAAATATCTTATAAATTTCAACTGATAAATTATTTATCATAATACCAGCAATATTTCATCAGTTGTCACCTTTTTAATATATATAACCGGAACCGAGATAAATTGGATCAAAAAGTTTATCAATTGAATTAAAAATGAAAACTTCAAAATTGCGAATGAAATTTGAAAAGAAACACACATATTTTCAAAAGTATAATATATTTTGAAAAGCTATAGAAAACTCATATTTCATGAGAAAGCAAATTTTTTCTTCAACTTTTCAATATCAAAAGAAAGAATTGATAAACTATCAACTACAAAAAATTCCGGCAGAAAAAAGTGCGAACCTGAAAAAATTGTGGTTAGACTTTTTCCTCCTCGTTCTTTTTTTTGAATTTCGAAATGTTTCACTAGAGAAGGGGATTTGGAAAACGAGAAGGAAGTGATGTGCTCCTTTTCTCTCCCAGAGCAAAGCTGCTCTCCCAGAGCAAAGCTGCTCCGAGTGCTCGTGCACTCAGAAAATGAAAAAAGAACGTGATGGCTACTCTGGTGACACTGACTAGTAGTCGCCCTGCTCCAGAGAGCAAAGTATGAACACAACGTTTTGGTGTTTGAGAGACTAAATGGGGGTGAGCTAAGAATTTTTAATTGCATGAGAGGAGCAACGAATCCTTTTTATTTTTAAAGGGGTTTCTTTCAAAAATGGAATTGAGAGAAAATTTGTAGTATTCGAAATAGGGAATCAAAGAAAAAATATTGGTCTCTTTTTTAGAAATTTGTGATTAAATGCGAGGGAGGAAAGCATGCACGTAAACGGGCGAATTGCCTTTTTCATGATTGATTGAATAGTGACACGGCTCCAAAAGTGAGAAATGCGAGAAAATAGTACAGAATAAAGACCAAAAAAAATGAGAAGGT</canonical>
            <polymorphic>TCAGCAAGTCGTAGGTTGACGCTGTTTGAATCATACCGTAAACCCTGTAATAGAAGAGCCCCTACACTTTCAAACTTGAGCTCAATTATCTCGGTTCCTTTGAAAAATATCTTATAAATTTCAACTGATAAATTATTTATCATAATACCAGCAATATTTCATCAGTTGTCACCTTTTTAATATATATAACCGGAACCGAGATAAATTGGATCAAAAAGTTTATCAATTGAATTAAAAATGAAAACTTCAAAATTGCGAATGAAATTTGAAAAGAAACACACATATTTTCAAAAGTATAATATATTTTGAAAAGCTATAGAAAACTCATATTTCATGAGAAAGCAAATTTTTTCTTCAACTTTTCAATATCAAAAGAAAGAATTGATAAACTATCAACTACAAAAAATTCCGGCAGAAAAAAGTGCGAACCTGAAAAAATTGTGGTTAGACTTTTTCCTCCTCGTTCTTTTTTTTGAATTTCGAAATGTTTCACTAGAGARGGGGATTTGGAAAACGAGAAGGAAGTGATGTGCTCCTTTTCTCTCCCAGAGCAAAGCTGCTCTCCCAGAGCAAAGCTGCTCCGAGTGCTCGTGCACTCAGAAAATGAAAAAAGAACGTGATGGCTACTCTGGTGACACTGACTAGTAGTCGCCCTGCTCCAGAGAGCAAAGTATGAACACAACGTTTTGGTGTTTGAGAGACTAAATGGGGGTGAGCTAAGAATTTTTAATTGCATGAGAGGAGCAACGAATCCTTTTTATTTTTAAAGGGGTTTCTTTCAAAAATGGAATTGAGAGAAAATTTGTAGTATTCGAAATAGGGAATCAAAGAAAAAATATTGGTCTCTTTTTTAGAAATTTGTGATTAAATGCGAGGGAGGAAAGCATGCACGTAAACGGGCGAATTGCCTTTTTCATGATTGATTGAATAGTGACACGGCTCCAAAAGTGAGAAATGCGAGAAAATAGTACAGAATAAAGACCAAAAAAAATGAGAAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGTGGTTAGACTTTTTCCTC</pcr_primer_p1>
		<pcr_primer_p2>GTTGTGTTCATACTTTGCTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATTGTGGTTAGACTTTTTCCTCCTCGTTCTTTTTTTTGAATTTCGAAATGTTTCACTAGAGAAGGGGATTTGGAAAACGAGAAGGAAGTGATGTGCTCCTTTTCTCTCCCAGAGCAAAGCTGCTCTCCCAGAGCAAAGCTGCTCCGAGTGCTCGTGCACTCAGAAAATGAAAAAAGAACGTGATGGCTACTCTGGTGACACTGACTAGTAGTCGCCCTGCTCCAGAGAGCAAAGTATGAACACAAC</canonical_amplicon>
		<polymorphic_amplicon>AATTGTGGTTAGACTTTTTCCTCCTCGTTCTTTTTTTTGAATTTCGAAATGTTTCACTAGAGARGGGGATTTGGAAAACGAGAAGGAAGTGATGTGCTCCTTTTCTCTCCCAGAGCAAAGCTGCTCTCCCAGAGCAAAGCTGCTCCGAGTGCTCGTGCACTCAGAAAATGAAAAAAGAACGTGATGGCTACTCTGGTGACACTGACTAGTAGTCGCCCTGCTCCAGAGAGCAAAGTATGAACACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11904</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>829029</contig_pos>
        <strand></strand>
        <context>GAGARGGGGA[T/G]TTGGAAAACG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CCTCCTCGTTCTTTTTTTTGAATTTCGAAATGTTTCACTAGAGAAGGGGA</left_flank>
        <right_flank>TTGGAAAACGAGAAGGAAGTGATGTGCTCCTTTTCTCTCCCAGAGCAAAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCGTAGGTTGACGCTGTTTGAATCATACCGTAAACCCTGTAATAGAAGAGCCCCTACACTTTCAAACTTGAGCTCAATTATCTCGGTTCCTTTGAAAAATATCTTATAAATTTCAACTGATAAATTATTTATCATAATACCAGCAATATTTCATCAGTTGTCACCTTTTTAATATATATAACCGGAACCGAGATAAATTGGATCAAAAAGTTTATCAATTGAATTAAAAATGAAAACTTCAAAATTGCGAATGAAATTTGAAAAGAAACACACATATTTTCAAAAGTATAATATATTTTGAAAAGCTATAGAAAACTCATATTTCATGAGAAAGCAAATTTTTTCTTCAACTTTTCAATATCAAAAGAAAGAATTGATAAACTATCAACTACAAAAAATTCCGGCAGAAAAAAGTGCGAACCTGAAAAAATTGTGGTTAGACTTTTTCCTCCTCGTTCTTTTTTTTGAATTTCGAAATGTTTCACTAGAGAAGGGGATTTGGAAAACGAGAAGGAAGTGATGTGCTCCTTTTCTCTCCCAGAGCAAAGCTGCTCTCCCAGAGCAAAGCTGCTCCGAGTGCTCGTGCACTCAGAAAATGAAAAAAGAACGTGATGGCTACTCTGGTGACACTGACTAGTAGTCGCCCTGCTCCAGAGAGCAAAGTATGAACACAACGTTTTGGTGTTTGAGAGACTAAATGGGGGTGAGCTAAGAATTTTTAATTGCATGAGAGGAGCAACGAATCCTTTTTATTTTTAAAGGGGTTTCTTTCAAAAATGGAATTGAGAGAAAATTTGTAGTATTCGAAATAGGGAATCAAAGAAAAAATATTGGTCTCTTTTTTAGAAATTTGTGATTAAATGCGAGGGAGGAAAGCATGCACGTAAACGGGCGAATTGCCTTTTTCATGATTGATTGAATAGTGACACGGCTCCAAAAGTGAGAAATGCGAGAAAATAGTACAGAATAAAGACCAAAAAAAATGAGAAGGTTCTAAG</canonical>
            <polymorphic>AGTCGTAGGTTGACGCTGTTTGAATCATACCGTAAACCCTGTAATAGAAGAGCCCCTACACTTTCAAACTTGAGCTCAATTATCTCGGTTCCTTTGAAAAATATCTTATAAATTTCAACTGATAAATTATTTATCATAATACCAGCAATATTTCATCAGTTGTCACCTTTTTAATATATATAACCGGAACCGAGATAAATTGGATCAAAAAGTTTATCAATTGAATTAAAAATGAAAACTTCAAAATTGCGAATGAAATTTGAAAAGAAACACACATATTTTCAAAAGTATAATATATTTTGAAAAGCTATAGAAAACTCATATTTCATGAGAAAGCAAATTTTTTCTTCAACTTTTCAATATCAAAAGAAAGAATTGATAAACTATCAACTACAAAAAATTCCGGCAGAAAAAAGTGCGAACCTGAAAAAATTGTGGTTAGACTTTTTCCTCCTCGTTCTTTTTTTTGAATTTCGAAATGTTTCACTAGAGAAGGGGAKTTGGAAAACGAGAAGGAAGTGATGTGCTCCTTTTCTCTCCCAGAGCAAAGCTGCTCTCCCAGAGCAAAGCTGCTCCGAGTGCTCGTGCACTCAGAAAATGAAAAAAGAACGTGATGGCTACTCTGGTGACACTGACTAGTAGTCGCCCTGCTCCAGAGAGCAAAGTATGAACACAACGTTTTGGTGTTTGAGAGACTAAATGGGGGTGAGCTAAGAATTTTTAATTGCATGAGAGGAGCAACGAATCCTTTTTATTTTTAAAGGGGTTTCTTTCAAAAATGGAATTGAGAGAAAATTTGTAGTATTCGAAATAGGGAATCAAAGAAAAAATATTGGTCTCTTTTTTAGAAATTTGTGATTAAATGCGAGGGAGGAAAGCATGCACGTAAACGGGCGAATTGCCTTTTTCATGATTGATTGAATAGTGACACGGCTCCAAAAGTGAGAAATGCGAGAAAATAGTACAGAATAAAGACCAAAAAAAATGAGAAGGTTCTAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGTGGTTAGACTTTTTCCTC</pcr_primer_p1>
		<pcr_primer_p2>GTTGTGTTCATACTTTGCTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATTGTGGTTAGACTTTTTCCTCCTCGTTCTTTTTTTTGAATTTCGAAATGTTTCACTAGAGAAGGGGATTTGGAAAACGAGAAGGAAGTGATGTGCTCCTTTTCTCTCCCAGAGCAAAGCTGCTCTCCCAGAGCAAAGCTGCTCCGAGTGCTCGTGCACTCAGAAAATGAAAAAAGAACGTGATGGCTACTCTGGTGACACTGACTAGTAGTCGCCCTGCTCCAGAGAGCAAAGTATGAACACAAC</canonical_amplicon>
		<polymorphic_amplicon>AATTGTGGTTAGACTTTTTCCTCCTCGTTCTTTTTTTTGAATTTCGAAATGTTTCACTAGAGAAGGGGAKTTGGAAAACGAGAAGGAAGTGATGTGCTCCTTTTCTCTCCCAGAGCAAAGCTGCTCTCCCAGAGCAAAGCTGCTCCGAGTGCTCGTGCACTCAGAAAATGAAAAAAGAACGTGATGGCTACTCTGGTGACACTGACTAGTAGTCGCCCTGCTCCAGAGAGCAAAGTATGAACACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11906</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>835359</contig_pos>
        <strand>+</strand>
        <context>GAGTATACTT[C/T]ATTTTGTGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTTCACCATGATTATTTGGAGCTCTACTTATGAGAAGGTGAGTATACTT</left_flank>
        <right_flank>ATTTTGTGGGTACTGTATTTTCACAACTTTCTGTTTTAGGCTTGGAACAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATTCCAAAGATTTCTCGAGCACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGTAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATCCATCATGGTTCCCGTTGAATTTCTTCTATTTCATCCATTTTTCTATGGCCTATGTGCAATTTTTCTTGATATTCTTGACATCTCTAAACAGGTTCACCATGATTATTTGGAGCTCTACTTATGAGAAGGTGAGTATACTTTATTTTGTGGGTACTGTATTTTCACAACTTTCTGTTTTAGGCTTGGAACAAAATATTCAAATTCTTGATTGTCTTGGTCTCTCTGTTACCTATCCCATTCACTTACACAATTTTAATAAGTTCCACTTATTATACCTATACAGAAACCTTGGATTGTTACACGGTTTCTAGTACAGCAAGCCGAGAGCACCTTTACAACTTTTTGCTTCCATATTTTGCAATAGTTACAATTACAACAGCTATTATAAATGTTGCATCTTTCTATAAACTATCCTGTATGACCTATAAAATATCTCTTGCCGAAAGAAATTTACTTTTTGTCAGTGGCGCGTTGTTCATCGTTCAATTGATCGCAGATGCGAATACGGTAAGACAAAATTACCATAAAACTTGGAATAGAACAGCCTCCGTCAACTTTGACCTTTTCATCTCCGTTCCTGTGTTCCTGTGAGAGAAATCAAAACACAAAATAATTATGGTATTATGAAAAACATTTTATCA</canonical>
            <polymorphic>AACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATTCCAAAGATTTCTCGAGCACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGTAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATCCATCATGGTTCCCGTTGAATTTCTTCTATTTCATCCATTTTTCTATGGCCTATGTGCAATTTTTCTTGATATTCTTGACATCTCTAAACAGGTTCACCATGATTATTTGGAGCTCTACTTATGAGAAGGTGAGTATACTTYATTTTGTGGGTACTGTATTTTCACAACTTTCTGTTTTAGGCTTGGAACAAAATATTCAAATTCTTGATTGTCTTGGTCTCTCTGTTACCTATCCCATTCACTTACACAATTTTAATAAGTTCCACTTATTATACCTATACAGAAACCTTGGATTGTTACACGGTTTCTAGTACAGCAAGCCGAGAGCACCTTTACAACTTTTTGCTTCCATATTTTGCAATAGTTACAATTACAACAGCTATTATAAATGTTGCATCTTTCTATAAACTATCCTGTATGACCTATAAAATATCTCTTGCCGAAAGAAATTTACTTTTTGTCAGTGGCGCGTTGTTCATCGTTCAATTGATCGCAGATGCGAATACGGTAAGACAAAATTACCATAAAACTTGGAATAGAACAGCCTCCGTCAACTTTGACCTTTTCATCTCCGTTCCTGTGTTCCTGTGAGAGAAATCAAAACACAAAATAATTATGGTATTATGAAAAACATTTTATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTGACATCTCTAAACAGGTTC</pcr_primer_p1>
		<pcr_primer_p2>TGCTGTACTAGAAACCGTGTAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCTTGACATCTCTAAACAGGTTCACCATGATTATTTGGAGCTCTACTTATGAGAAGGTGAGTATACTTTATTTTGTGGGTACTGTATTTTCACAACTTTCTGTTTTAGGCTTGGAACAAAATATTCAAATTCTTGATTGTCTTGGTCTCTCTGTTACCTATCCCATTCACTTACACAATTTTAATAAGTTCCACTTATTATACCTATACAGAAACCTTGGATTGTTACACGGTTTCTAGTACAGCA</canonical_amplicon>
		<polymorphic_amplicon>TCTTGACATCTCTAAACAGGTTCACCATGATTATTTGGAGCTCTACTTATGAGAAGGTGAGTATACTTYATTTTGTGGGTACTGTATTTTCACAACTTTCTGTTTTAGGCTTGGAACAAAATATTCAAATTCTTGATTGTCTTGGTCTCTCTGTTACCTATCCCATTCACTTACACAATTTTAATAAGTTCCACTTATTATACCTATACAGAAACCTTGGATTGTTACACGGTTTCTAGTACAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11907</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>835323</contig_pos>
        <strand>+</strand>
        <context>CACCATGATT[A/T]TTTGGAGCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGCAATTTTTCTTGATATTCTTGACATCTCTAAACAGGTTCACCATGATT</left_flank>
        <right_flank>TTTGGAGCTCTACTTATGAGAAGGTGAGTATACTTTATTTTGTGGGTACT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATTCCAAAGATTTCTCGAGCACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGTAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATCCATCATGGTTCCCGTTGAATTTCTTCTATTTCATCCATTTTTCTATGGCCTATGTGCAATTTTTCTTGATATTCTTGACATCTCTAAACAGGTTCACCATGATTATTTGGAGCTCTACTTATGAGAAGGTGAGTATACTTTATTTTGTGGGTACTGTATTTTCACAACTTTCTGTTTTAGGCTTGGAACAAAATATTCAAATTCTTGATTGTCTTGGTCTCTCTGTTACCTATCCCATTCACTTACACAATTTTAATAAGTTCCACTTATTATACCTATACAGAAACCTTGGATTGTTACACGGTTTCTAGTACAGCAAGCCGAGAGCACCTTTACAACTTTTTGCTTCCATATTTTGCAATAGTTACAATTACAACAGCTATTATAAATGTTGCATCTTTCTATAAACTATCCTGTATGACCTATAAAATATCTCTTGCCGAAAGAAATTTACTTTTTGTCAGTGGCGCGTTGTTCATCGTTCAATTGATCGCAGATGCGAATACGGTAAGACAAAATTACCATAAAACTTGGAATAGAACAGCCTCCGTCAACTTTGACCTTTTCATCTCCGTTCCTGTGTTCCTGTGAGAGAAATCAAAACA</canonical>
            <polymorphic>CAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATTCCAAAGATTTCTCGAGCACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGTAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATCCATCATGGTTCCCGTTGAATTTCTTCTATTTCATCCATTTTTCTATGGCCTATGTGCAATTTTTCTTGATATTCTTGACATCTCTAAACAGGTTCACCATGATTWTTTGGAGCTCTACTTATGAGAAGGTGAGTATACTTTATTTTGTGGGTACTGTATTTTCACAACTTTCTGTTTTAGGCTTGGAACAAAATATTCAAATTCTTGATTGTCTTGGTCTCTCTGTTACCTATCCCATTCACTTACACAATTTTAATAAGTTCCACTTATTATACCTATACAGAAACCTTGGATTGTTACACGGTTTCTAGTACAGCAAGCCGAGAGCACCTTTACAACTTTTTGCTTCCATATTTTGCAATAGTTACAATTACAACAGCTATTATAAATGTTGCATCTTTCTATAAACTATCCTGTATGACCTATAAAATATCTCTTGCCGAAAGAAATTTACTTTTTGTCAGTGGCGCGTTGTTCATCGTTCAATTGATCGCAGATGCGAATACGGTAAGACAAAATTACCATAAAACTTGGAATAGAACAGCCTCCGTCAACTTTGACCTTTTCATCTCCGTTCCTGTGTTCCTGTGAGAGAAATCAAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTATTCAAATGGCATACAGTT</pcr_primer_p1>
		<pcr_primer_p2>AGACCAAGACAATCAAGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTATTCAAATGGCATACAGTTGAGAATCCATCATGGTTCCCGTTGAATTTCTTCTATTTCATCCATTTTTCTATGGCCTATGTGCAATTTTTCTTGATATTCTTGACATCTCTAAACAGGTTCACCATGATTATTTGGAGCTCTACTTATGAGAAGGTGAGTATACTTTATTTTGTGGGTACTGTATTTTCACAACTTTCTGTTTTAGGCTTGGAACAAAATATTCAAATTCTTGATTGTCTTGGTCT</canonical_amplicon>
		<polymorphic_amplicon>TTCTATTCAAATGGCATACAGTTGAGAATCCATCATGGTTCCCGTTGAATTTCTTCTATTTCATCCATTTTTCTATGGCCTATGTGCAATTTTTCTTGATATTCTTGACATCTCTAAACAGGTTCACCATGATTWTTTGGAGCTCTACTTATGAGAAGGTGAGTATACTTTATTTTGTGGGTACTGTATTTTCACAACTTTCTGTTTTAGGCTTGGAACAAAATATTCAAATTCTTGATTGTCTTGGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11908</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>835169</contig_pos>
        <strand>+</strand>
        <context>AGAACACTTG[C/T]AAAGACTGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTG</left_flank>
        <right_flank>AAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACATTGAAACGGGAAATTGGATTTTGGAAAGATTTACAGCAGAGAACAATTCATGTCTAGATTCTGAGAACAGGCGCTACAGTAACCCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATTCCAAAGATTTCTCGAGCACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGTAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATCCATCATGGTTCCCGTTGAATTTCTTCTATTTCATCCATTTTTCTATGGCCTATGTGCAATTTTTCTTGATATTCTTGACATCTCTAAACAGGTTCACCATGATTATTTGGAGCTCTACTTATGAGAAGGTGAGTATACTTTATTTTGTGGGTACTGTATTTTCACAACTTTCTGTTTTAGGCTTGGAACAAAATATTCAAATTCTTGATTGTCTTGGTCTCTCTGTTACCTATCCCATTCACTTACACAATTTTAATAAGTTCCACTTATTATACCTATACAGAAACCTTGGATTGTTACACGGTTTCTAGTACAGCAAGCCGAGAGCACCTTTACAACTTTTTGCTTCCATATTTTGCAATAGTTACAATTACAACAGCTATTATAAATGTTGCATCTTTCTATAAACTATCCTGTATGACCTATAAAATATCTCTTGCCGAAAGAAATT</canonical>
            <polymorphic>AAACATTGAAACGGGAAATTGGATTTTGGAAAGATTTACAGCAGAGAACAATTCATGTCTAGATTCTGAGAACAGGCGCTACAGTAACCCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATTCCAAAGATTTCTCGAGCACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGYAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATCCATCATGGTTCCCGTTGAATTTCTTCTATTTCATCCATTTTTCTATGGCCTATGTGCAATTTTTCTTGATATTCTTGACATCTCTAAACAGGTTCACCATGATTATTTGGAGCTCTACTTATGAGAAGGTGAGTATACTTTATTTTGTGGGTACTGTATTTTCACAACTTTCTGTTTTAGGCTTGGAACAAAATATTCAAATTCTTGATTGTCTTGGTCTCTCTGTTACCTATCCCATTCACTTACACAATTTTAATAAGTTCCACTTATTATACCTATACAGAAACCTTGGATTGTTACACGGTTTCTAGTACAGCAAGCCGAGAGCACCTTTACAACTTTTTGCTTCCATATTTTGCAATAGTTACAATTACAACAGCTATTATAAATGTTGCATCTTTCTATAAACTATCCTGTATGACCTATAAAATATCTCTTGCCGAAAGAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCTTTTTGAAACTCTACAAGA</pcr_primer_p1>
		<pcr_primer_p2>CCATAGAAAAATGGATGAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGTAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATCCATCATGGTTCCCGTTGAATTTCTTCTATTTCATCCATTTTTCTATGG</canonical_amplicon>
		<polymorphic_amplicon>CACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGYAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATCCATCATGGTTCCCGTTGAATTTCTTCTATTTCATCCATTTTTCTATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11909</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>835119</contig_pos>
        <strand></strand>
        <context>TCAGAACAAT[G/A]TAACATTCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAAT</left_flank>
        <right_flank>TAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATAAAACCGCAAAAGCAGGTGATGCTGTAAATGTGGAGAACTAATTTGAAAACATTGAAACGGGAAATTGGATTTTGGAAAGATTTACAGCAGAGAACAATTCATGTCTAGATTCTGAGAACAGGCGCTACAGTAACCCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATTCCAAAGATTTCTCGAGCACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGTAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATCCATCATGGTTCCCGTTGAATTTCTTCTATTTCATCCATTTTTCTATGGCCTATGTGCAATTTTTCTTGATATTCTTGACATCTCTAAACAGGTTCACCATGATTATTTGGAGCTCTACTTATGAGAAGGTGAGTATACTTTATTTTGTGGGTACTGTATTTTCACAACTTTCTGTTTTAGGCTTGGAACAAAATATTCAAATTCTTGATTGTCTTGGTCTCTCTGTTACCTATCCCATTCACTTACACAATTTTAATAAGTTCCACTTATTATACCTATACAGAAACCTTGGATTGTTACACGGTTTCTAGTACAGCAAGCCGAGAGCACCTTTACAACTTTTTGCTTCCATATTTTGCAATAGTTACAATTACAACAGCTATTATAAATGTTGCATCTTT</canonical>
            <polymorphic>CATAAAACCGCAAAAGCAGGTGATGCTGTAAATGTGGAGAACTAATTTGAAAACATTGAAACGGGAAATTGGATTTTGGAAAGATTTACAGCAGAGAACAATTCATGTCTAGATTCTGAGAACAGGCGCTACAGTAACCCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATTCCAAAGATTTCTCGAGCACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAATRTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGTAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATCCATCATGGTTCCCGTTGAATTTCTTCTATTTCATCCATTTTTCTATGGCCTATGTGCAATTTTTCTTGATATTCTTGACATCTCTAAACAGGTTCACCATGATTATTTGGAGCTCTACTTATGAGAAGGTGAGTATACTTTATTTTGTGGGTACTGTATTTTCACAACTTTCTGTTTTAGGCTTGGAACAAAATATTCAAATTCTTGATTGTCTTGGTCTCTCTGTTACCTATCCCATTCACTTACACAATTTTAATAAGTTCCACTTATTATACCTATACAGAAACCTTGGATTGTTACACGGTTTCTAGTACAGCAAGCCGAGAGCACCTTTACAACTTTTTGCTTCCATATTTTGCAATAGTTACAATTACAACAGCTATTATAAATGTTGCATCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>366 324 133 71 68 38</canonical_bands>
                <polymorphic_bands>690 133 71 68 38</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGTCCTCTACTTTATGACATTT</pcr_primer_p1>
		<pcr_primer_p2>GATTCTCAACTGTATGCCATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATTCCAAAGATTTCTCGAGCACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGTAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATC</canonical_amplicon>
		<polymorphic_amplicon>TGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATTCCAAAGATTTCTCGAGCACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAATRTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGTAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11910</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>834950</contig_pos>
        <strand>+</strand>
        <context>GCAYGACTCT[A/T]CTCTACAGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCT</left_flank>
        <right_flank>CTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGAGCCGCGTCAGAGCTTCAGTAGATTCCTTCACCAGACATATCCACTAAAATCCAGTCTTTCCCTCCACATGTTTCTGCAAGCTTTCTGAAAACAATTTCAGCCGGAAGCCTACTGAAAGGTCGCTCTGAAAAAAGATCGGTCATAAGTCATGCTGTTCTGGAAAACATAAAACCGCAAAAGCAGGTGATGCTGTAAATGTGGAGAACTAATTTGAAAACATTGAAACGGGAAATTGGATTTTGGAAAGATTTACAGCAGAGAACAATTCATGTCTAGATTCTGAGAACAGGCGCTACAGTAACCCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATTCCAAAGATTTCTCGAGCACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGTAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATCCATCATGGTTCCCGTTGAATTTCTTCTATTTCATCCATTTTTCTATGGCCTATGTGCAATTTTTCTTGATATTCTTGACATCTCTAAACAGGTTCACCATGATTATTTGGAGCTCTACTTATGAGAAGGTGAGTATACTTTATTTTGTGGGTACTGTATTTTCACAACTTTCTGTTTTAGGCTTGGAACAAAATATTCAAATTCTTGATTGTCTTGGTCTCTCTGTTACCTA</canonical>
            <polymorphic>TGGGAGCCGCGTCAGAGCTTCAGTAGATTCCTTCACCAGACATATCCACTAAAATCCAGTCTTTCCCTCCACATGTTTCTGCAAGCTTTCTGAAAACAATTTCAGCCGGAAGCCTACTGAAAGGTCGCTCTGAAAAAAGATCGGTCATAAGTCATGCTGTTCTGGAAAACATAAAACCGCAAAAGCAGGTGATGCTGTAAATGTGGAGAACTAATTTGAAAACATTGAAACGGGAAATTGGATTTTGGAAAGATTTACAGCAGAGAACAATTCATGTCTAGATTCTGAGAACAGGCGCTACAGTAACCCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTWCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATTCCAAAGATTTCTCGAGCACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGTAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATCCATCATGGTTCCCGTTGAATTTCTTCTATTTCATCCATTTTTCTATGGCCTATGTGCAATTTTTCTTGATATTCTTGACATCTCTAAACAGGTTCACCATGATTATTTGGAGCTCTACTTATGAGAAGGTGAGTATACTTTATTTTGTGGGTACTGTATTTTCACAACTTTCTGTTTTAGGCTTGGAACAAAATATTCAAATTCTTGATTGTCTTGGTCTCTCTGTTACCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCCTGAATAAAAGTTTATGTTT</pcr_primer_p1>
		<pcr_primer_p2>AATACTTTCGGACCATTAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATT</canonical_amplicon>
		<polymorphic_amplicon>CCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTWCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11911</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>834943</contig_pos>
        <strand>+</strand>
        <context>AAATTTGGCA[C/T]GACTCTWCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCA</left_flank>
        <right_flank>GACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTC</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAAATCTGGGAGCCGCGTCAGAGCTTCAGTAGATTCCTTCACCAGACATATCCACTAAAATCCAGTCTTTCCCTCCACATGTTTCTGCAAGCTTTCTGAAAACAATTTCAGCCGGAAGCCTACTGAAAGGTCGCTCTGAAAAAAGATCGGTCATAAGTCATGCTGTTCTGGAAAACATAAAACCGCAAAAGCAGGTGATGCTGTAAATGTGGAGAACTAATTTGAAAACATTGAAACGGGAAATTGGATTTTGGAAAGATTTACAGCAGAGAACAATTCATGTCTAGATTCTGAGAACAGGCGCTACAGTAACCCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATTCCAAAGATTTCTCGAGCACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGTAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATCCATCATGGTTCCCGTTGAATTTCTTCTATTTCATCCATTTTTCTATGGCCTATGTGCAATTTTTCTTGATATTCTTGACATCTCTAAACAGGTTCACCATGATTATTTGGAGCTCTACTTATGAGAAGGTGAGTATACTTTATTTTGTGGGTACTGTATTTTCACAACTTTCTGTTTTAGGCTTGGAACAAAATATTCAAATTCTTGATTGTCTTGGTCTCTCTG</canonical>
            <polymorphic>GCAAATCTGGGAGCCGCGTCAGAGCTTCAGTAGATTCCTTCACCAGACATATCCACTAAAATCCAGTCTTTCCCTCCACATGTTTCTGCAAGCTTTCTGAAAACAATTTCAGCCGGAAGCCTACTGAAAGGTCGCTCTGAAAAAAGATCGGTCATAAGTCATGCTGTTCTGGAAAACATAAAACCGCAAAAGCAGGTGATGCTGTAAATGTGGAGAACTAATTTGAAAACATTGAAACGGGAAATTGGATTTTGGAAAGATTTACAGCAGAGAACAATTCATGTCTAGATTCTGAGAACAGGCGCTACAGTAACCCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCAYGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATTCCAAAGATTTCTCGAGCACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGTAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATCCATCATGGTTCCCGTTGAATTTCTTCTATTTCATCCATTTTTCTATGGCCTATGTGCAATTTTTCTTGATATTCTTGACATCTCTAAACAGGTTCACCATGATTATTTGGAGCTCTACTTATGAGAAGGTGAGTATACTTTATTTTGTGGGTACTGTATTTTCACAACTTTCTGTTTTAGGCTTGGAACAAAATATTCAAATTCTTGATTGTCTTGGTCTCTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>222 120 114 110 87 61 42 40 37 35 23 21 19 18 15 14 13 9</canonical_bands>
                <polymorphic_bands>222 124 120 114 110 61 42 40 35 23 21 19 18 15 14 13 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCCTGAATAAAAGTTTATGTTT</pcr_primer_p1>
		<pcr_primer_p2>AATACTTTCGGACCATTAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATT</canonical_amplicon>
		<polymorphic_amplicon>CCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCAYGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11912</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>834924</contig_pos>
        <strand>+</strand>
        <context>TTCAGACATG[A/C]TTACTATCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATG</left_flank>
        <right_flank>TTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTAAAAATTCACTTTCTGGCAAATCTGGGAGCCGCGTCAGAGCTTCAGTAGATTCCTTCACCAGACATATCCACTAAAATCCAGTCTTTCCCTCCACATGTTTCTGCAAGCTTTCTGAAAACAATTTCAGCCGGAAGCCTACTGAAAGGTCGCTCTGAAAAAAGATCGGTCATAAGTCATGCTGTTCTGGAAAACATAAAACCGCAAAAGCAGGTGATGCTGTAAATGTGGAGAACTAATTTGAAAACATTGAAACGGGAAATTGGATTTTGGAAAGATTTACAGCAGAGAACAATTCATGTCTAGATTCTGAGAACAGGCGCTACAGTAACCCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATTCCAAAGATTTCTCGAGCACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGTAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATCCATCATGGTTCCCGTTGAATTTCTTCTATTTCATCCATTTTTCTATGGCCTATGTGCAATTTTTCTTGATATTCTTGACATCTCTAAACAGGTTCACCATGATTATTTGGAGCTCTACTTATGAGAAGGTGAGTATACTTTATTTTGTGGGTACTGTATTTTCACAACTTTCTGTTTTAGGCTTGGAACAAAATATTCAAATTCTT</canonical>
            <polymorphic>TCTAAAAATTCACTTTCTGGCAAATCTGGGAGCCGCGTCAGAGCTTCAGTAGATTCCTTCACCAGACATATCCACTAAAATCCAGTCTTTCCCTCCACATGTTTCTGCAAGCTTTCTGAAAACAATTTCAGCCGGAAGCCTACTGAAAGGTCGCTCTGAAAAAAGATCGGTCATAAGTCATGCTGTTCTGGAAAACATAAAACCGCAAAAGCAGGTGATGCTGTAAATGTGGAGAACTAATTTGAAAACATTGAAACGGGAAATTGGATTTTGGAAAGATTTACAGCAGAGAACAATTCATGTCTAGATTCTGAGAACAGGCGCTACAGTAACCCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGMTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATTCCAAAGATTTCTCGAGCACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGTAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATCCATCATGGTTCCCGTTGAATTTCTTCTATTTCATCCATTTTTCTATGGCCTATGTGCAATTTTTCTTGATATTCTTGACATCTCTAAACAGGTTCACCATGATTATTTGGAGCTCTACTTATGAGAAGGTGAGTATACTTTATTTTGTGGGTACTGTATTTTCACAACTTTCTGTTTTAGGCTTGGAACAAAATATTCAAATTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>501 398 101</canonical_bands>
                <polymorphic_bands>899 101</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCCTGAATAAAAGTTTATGTTT</pcr_primer_p1>
		<pcr_primer_p2>AATACTTTCGGACCATTAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATT</canonical_amplicon>
		<polymorphic_amplicon>CCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGMTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11913</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>834895</contig_pos>
        <strand>+</strand>
        <context>CACAAAAWTT[A/C]CGTCTAGACA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATT</left_flank>
        <right_flank>CGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTCTTTTCCAATTTCCAACTTCAGAATTCTAAAAATTCACTTTCTGGCAAATCTGGGAGCCGCGTCAGAGCTTCAGTAGATTCCTTCACCAGACATATCCACTAAAATCCAGTCTTTCCCTCCACATGTTTCTGCAAGCTTTCTGAAAACAATTTCAGCCGGAAGCCTACTGAAAGGTCGCTCTGAAAAAAGATCGGTCATAAGTCATGCTGTTCTGGAAAACATAAAACCGCAAAAGCAGGTGATGCTGTAAATGTGGAGAACTAATTTGAAAACATTGAAACGGGAAATTGGATTTTGGAAAGATTTACAGCAGAGAACAATTCATGTCTAGATTCTGAGAACAGGCGCTACAGTAACCCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATTCCAAAGATTTCTCGAGCACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGTAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATCCATCATGGTTCCCGTTGAATTTCTTCTATTTCATCCATTTTTCTATGGCCTATGTGCAATTTTTCTTGATATTCTTGACATCTCTAAACAGGTTCACCATGATTATTTGGAGCTCTACTTATGAGAAGGTGAGTATACTTTATTTTGTGGGTACTGTATTTTCACAACTTTCTGTTT</canonical>
            <polymorphic>ACCTCTTTTCCAATTTCCAACTTCAGAATTCTAAAAATTCACTTTCTGGCAAATCTGGGAGCCGCGTCAGAGCTTCAGTAGATTCCTTCACCAGACATATCCACTAAAATCCAGTCTTTCCCTCCACATGTTTCTGCAAGCTTTCTGAAAACAATTTCAGCCGGAAGCCTACTGAAAGGTCGCTCTGAAAAAAGATCGGTCATAAGTCATGCTGTTCTGGAAAACATAAAACCGCAAAAGCAGGTGATGCTGTAAATGTGGAGAACTAATTTGAAAACATTGAAACGGGAAATTGGATTTTGGAAAGATTTACAGCAGAGAACAATTCATGTCTAGATTCTGAGAACAGGCGCTACAGTAACCCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTMCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATTCCAAAGATTTCTCGAGCACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGTAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATCCATCATGGTTCCCGTTGAATTTCTTCTATTTCATCCATTTTTCTATGGCCTATGTGCAATTTTTCTTGATATTCTTGACATCTCTAAACAGGTTCACCATGATTATTTGGAGCTCTACTTATGAGAAGGTGAGTATACTTTATTTTGTGGGTACTGTATTTTCACAACTTTCTGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>460 171 160 131 43 26 9</canonical_bands>
                <polymorphic_bands>503 171 160 131 26 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCCTGAATAAAAGTTTATGTTT</pcr_primer_p1>
		<pcr_primer_p2>AATACTTTCGGACCATTAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATT</canonical_amplicon>
		<polymorphic_amplicon>CCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTMCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11914</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>834892</contig_pos>
        <strand>+</strand>
        <context>TCTCACAAAA[A/T]TTMCGTCTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAA</left_flank>
        <right_flank>TTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAACCTCTTTTCCAATTTCCAACTTCAGAATTCTAAAAATTCACTTTCTGGCAAATCTGGGAGCCGCGTCAGAGCTTCAGTAGATTCCTTCACCAGACATATCCACTAAAATCCAGTCTTTCCCTCCACATGTTTCTGCAAGCTTTCTGAAAACAATTTCAGCCGGAAGCCTACTGAAAGGTCGCTCTGAAAAAAGATCGGTCATAAGTCATGCTGTTCTGGAAAACATAAAACCGCAAAAGCAGGTGATGCTGTAAATGTGGAGAACTAATTTGAAAACATTGAAACGGGAAATTGGATTTTGGAAAGATTTACAGCAGAGAACAATTCATGTCTAGATTCTGAGAACAGGCGCTACAGTAACCCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATTCCAAAGATTTCTCGAGCACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGTAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATCCATCATGGTTCCCGTTGAATTTCTTCTATTTCATCCATTTTTCTATGGCCTATGTGCAATTTTTCTTGATATTCTTGACATCTCTAAACAGGTTCACCATGATTATTTGGAGCTCTACTTATGAGAAGGTGAGTATACTTTATTTTGTGGGTACTGTATTTTCACAACTTTCTG</canonical>
            <polymorphic>AGAACCTCTTTTCCAATTTCCAACTTCAGAATTCTAAAAATTCACTTTCTGGCAAATCTGGGAGCCGCGTCAGAGCTTCAGTAGATTCCTTCACCAGACATATCCACTAAAATCCAGTCTTTCCCTCCACATGTTTCTGCAAGCTTTCTGAAAACAATTTCAGCCGGAAGCCTACTGAAAGGTCGCTCTGAAAAAAGATCGGTCATAAGTCATGCTGTTCTGGAAAACATAAAACCGCAAAAGCAGGTGATGCTGTAAATGTGGAGAACTAATTTGAAAACATTGAAACGGGAAATTGGATTTTGGAAAGATTTACAGCAGAGAACAATTCATGTCTAGATTCTGAGAACAGGCGCTACAGTAACCCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAWTTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATTCCAAAGATTTCTCGAGCACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGTAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATCCATCATGGTTCCCGTTGAATTTCTTCTATTTCATCCATTTTTCTATGGCCTATGTGCAATTTTTCTTGATATTCTTGACATCTCTAAACAGGTTCACCATGATTATTTGGAGCTCTACTTATGAGAAGGTGAGTATACTTTATTTTGTGGGTACTGTATTTTCACAACTTTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>460 171 157 131 43 29 9</canonical_bands>
                <polymorphic_bands>503 171 157 131 29 9</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>172 171 131 117 117 115 43 40 33 23 15 14 9</canonical_bands>
                <polymorphic_bands>215 171 131 117 117 115 40 33 23 15 14 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCCTGAATAAAAGTTTATGTTT</pcr_primer_p1>
		<pcr_primer_p2>AATACTTTCGGACCATTAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATT</canonical_amplicon>
		<polymorphic_amplicon>CCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAWTTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11915</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>840457</contig_pos>
        <strand>+</strand>
        <context>CGAGAACCAT[C/T]TGATTAGCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCAT</left_flank>
        <right_flank>TGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTAAAATTGACCTAGATTGAAAAATTTGCATTCATAGAACTATTTGAAACTCCTTAGTTTTTCAGCTATTTGTCGATTTCCGAAGGACATCTTTTTCACGTTTTACAAAACGGCCAAAAAGAAAGACTTTTCGAAATCGGCAAATAGCTGAAAAACTAAAAAAAAAATTTTAATTCTGTGAATGCAAAGTTATCAATACAGGTATGTTTTACACCCTCCAAAATTTTCAAAGTGATCGAACACTCACAAGCCGAGCTCGAGACTTCTAAAAATGGCCGAAAATCTACTGGAAAATATGTTTTTGTATATCTTTCTGACCGGGACTGTATCTCGGTTCCTATAAAACATATCAAAACGAACGTAGGCAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAG</canonical>
            <polymorphic>TGTAAAATTGACCTAGATTGAAAAATTTGCATTCATAGAACTATTTGAAACTCCTTAGTTTTTCAGCTATTTGTCGATTTCCGAAGGACATCTTTTTCACGTTTTACAAAACGGCCAAAAAGAAAGACTTTTCGAAATCGGCAAATAGCTGAAAAACTAAAAAAAAAATTTTAATTCTGTGAATGCAAAGTTATCAATACAGGTATGTTTTACACCCTCCAAAATTTTCAAAGTGATCGAACACTCACAAGCCGAGCTCGAGACTTCTAAAAATGGCCGAAAATCTACTGGAAAATATGTTTTTGTATATCTTTCTGACCGGGACTGTATCTCGGTTCCTATAAAACATATCAAAACGAACGTAGGCAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATYTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>476 234 185 82 23</canonical_bands>
                <polymorphic_bands>476 234 208 82</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTGAGACACTGAAAATTGAT</pcr_primer_p1>
		<pcr_primer_p2>AAGAAATACGACATAGGAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>715</pcr_amplicon_size>
		<canonical_amplicon>TCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTT</canonical_amplicon>
		<polymorphic_amplicon>TYTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11916</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>840525</contig_pos>
        <strand>+</strand>
        <context>AAATTAAATT[C/T]AAGTCAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATT</left_flank>
        <right_flank>AAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTGTCGATTTCCGAAGGACATCTTTTTCACGTTTTACAAAACGGCCAAAAAGAAAGACTTTTCGAAATCGGCAAATAGCTGAAAAACTAAAAAAAAAATTTTAATTCTGTGAATGCAAAGTTATCAATACAGGTATGTTTTACACCCTCCAAAATTTTCAAAGTGATCGAACACTCACAAGCCGAGCTCGAGACTTCTAAAAATGGCCGAAAATCTACTGGAAAATATGTTTTTGTATATCTTTCTGACCGGGACTGTATCTCGGTTCCTATAAAACATATCAAAACGAACGTAGGCAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGT</canonical>
            <polymorphic>ATTTGTCGATTTCCGAAGGACATCTTTTTCACGTTTTACAAAACGGCCAAAAAGAAAGACTTTTCGAAATCGGCAAATAGCTGAAAAACTAAAAAAAAAATTTTAATTCTGTGAATGCAAAGTTATCAATACAGGTATGTTTTACACCCTCCAAAATTTTCAAAGTGATCGAACACTCACAAGCCGAGCTCGAGACTTCTAAAAATGGCCGAAAATCTACTGGAAAATATGTTTTTGTATATCTTTCTGACCGGGACTGTATCTCGGTTCCTATAAAACATATCAAAACGAACGTAGGCAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTYAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>341 316 134 98 56 55</canonical_bands>
                <polymorphic_bands>396 316 134 98 56</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>501 199 104 103 87 6</canonical_bands>
                <polymorphic_bands>507 199 104 103 87</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTAGCAATCGAAGTGGTTTC</pcr_primer_p1>
		<pcr_primer_p2>CTCACTCAAACTTCTGGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAG</canonical_amplicon>
		<polymorphic_amplicon>ATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTYAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11917</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>840541</contig_pos>
        <strand>+</strand>
        <context>AAAATCACTG[C/G]AACGACCGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTG</left_flank>
        <right_flank>AACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGACATCTTTTTCACGTTTTACAAAACGGCCAAAAAGAAAGACTTTTCGAAATCGGCAAATAGCTGAAAAACTAAAAAAAAAATTTTAATTCTGTGAATGCAAAGTTATCAATACAGGTATGTTTTACACCCTCCAAAATTTTCAAAGTGATCGAACACTCACAAGCCGAGCTCGAGACTTCTAAAAATGGCCGAAAATCTACTGGAAAATATGTTTTTGTATATCTTTCTGACCGGGACTGTATCTCGGTTCCTATAAAACATATCAAAACGAACGTAGGCAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAAT</canonical>
            <polymorphic>AGGACATCTTTTTCACGTTTTACAAAACGGCCAAAAAGAAAGACTTTTCGAAATCGGCAAATAGCTGAAAAACTAAAAAAAAAATTTTAATTCTGTGAATGCAAAGTTATCAATACAGGTATGTTTTACACCCTCCAAAATTTTCAAAGTGATCGAACACTCACAAGCCGAGCTCGAGACTTCTAAAAATGGCCGAAAATCTACTGGAAAATATGTTTTTGTATATCTTTCTGACCGGGACTGTATCTCGGTTCCTATAAAACATATCAAAACGAACGTAGGCAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGSAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACCTCCTATGTCGTATTTCTT</pcr_primer_p1>
		<pcr_primer_p2>AATATTTCAGTCGAATTTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATT</canonical_amplicon>
		<polymorphic_amplicon>ACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGSAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11918</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>840775</contig_pos>
        <strand>+</strand>
        <context>ACAATCTCAA[A/T]TTTTCYGGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAA</left_flank>
        <right_flank>TTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGGGACTGTATCTCGGTTCCTATAAAACATATCAAAACGAACGTAGGCAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATG</canonical>
            <polymorphic>CCGGGACTGTATCTCGGTTCCTATAAAACATATCAAAACGAACGTAGGCAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAAWTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>305 191 157 134 55 49 41 35 28 5</canonical_bands>
                <polymorphic_bands>305 191 157 134 69 55 49 35 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCCAGAAGTTTGAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>GCCTAAAATACCCCTTCTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAAWTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11919</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>840781</contig_pos>
        <strand>+</strand>
        <context>TCAAWTTTTC[C/T]GGAACMCCYK</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTC</left_flank>
        <right_flank>GGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTATCTCGGTTCCTATAAAACATATCAAAACGAACGTAGGCAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATG</canonical>
            <polymorphic>CTGTATCTCGGTTCCTATAAAACATATCAAAACGAACGTAGGCAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCYGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCCGGA</site>
                <isoschizomers>
                    <enzyme>AccIII</enzyme>
                    <enzyme>BseAI</enzyme>
                    <enzyme>BsiMI</enzyme>
                    <enzyme>Bsp13I</enzyme>
                    <enzyme>BspEI</enzyme>
                    <enzyme>BspMII</enzyme>
                    <enzyme>Kpn2I</enzyme>
                    <enzyme>MroI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 343 156</canonical_bands>
                <polymorphic_bands>844 156</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCCAGAAGTTTGAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>GCCTAAAATACCCCTTCTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCYGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11920</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>840787</contig_pos>
        <strand>+</strand>
        <context>TTTCYGGAAC[A/C]CCYKMRTCGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAAC</left_flank>
        <right_flank>CCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCGGTTCCTATAAAACATATCAAAACGAACGTAGGCAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTA</canonical>
            <polymorphic>CTCGGTTCCTATAAAACATATCAAAACGAACGTAGGCAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACMCCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>188 107 78 76 67 64 56 52 47 39 27 26 25 22 17 16 16 13 13 9 9 8 6 6 5 4 2 2</canonical_bands>
                <polymorphic_bands>188 107 78 76 67 66 64 56 52 47 26 25 22 17 16 16 13 13 9 9 8 6 6 5 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCCAGAAGTTTGAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>GCCTAAAATACCCCTTCTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACMCCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11921</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>840790</contig_pos>
        <strand>+</strand>
        <context>CYGGAACMCC[C/T]KMRTCGTCRA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACC</left_flank>
        <right_flank>GAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTCCTATAAAACATATCAAAACGAACGTAGGCAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGA</canonical>
            <polymorphic>GGTTCCTATAAAACATATCAAAACGAACGTAGGCAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCYGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCCAGAAGTTTGAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>GCCTAAAATACCCCTTCTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCYGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11922</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>840791</contig_pos>
        <strand>+</strand>
        <context>YGGAACMCCY[G/T]MRTCGTCRAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCT</left_flank>
        <right_flank>AATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCCTATAAAACATATCAAAACGAACGTAGGCAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGAT</canonical>
            <polymorphic>GTTCCTATAAAACATATCAAAACGAACGTAGGCAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTKAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>258 175 168 143 120 52 47 37</canonical_bands>
                <polymorphic_bands>258 180 175 168 120 52 47</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>310 175 168 143 120 47 37</canonical_bands>
                <polymorphic_bands>310 180 175 168 120 47</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCCAGAAGTTTGAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>GCCTAAAATACCCCTTCTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTKAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11923</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>840792</contig_pos>
        <strand>+</strand>
        <context>GGAACMCCYK[A/C]RTCGTCRAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTG</left_flank>
        <right_flank>ATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCTATAAAACATATCAAAACGAACGTAGGCAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATA</canonical>
            <polymorphic>TTCCTATAAAACATATCAAAACGAACGTAGGCAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGMATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>257 175 168 143 121 52 47 37</canonical_bands>
                <polymorphic_bands>257 180 175 168 121 52 47</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>309 175 168 143 121 47 37</canonical_bands>
                <polymorphic_bands>309 180 175 168 121 47</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCCAGAAGTTTGAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>GCCTAAAATACCCCTTCTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGMATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11924</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>840793</contig_pos>
        <strand>+</strand>
        <context>GAACMCCYKM[A/G]TCGTCRAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGA</left_flank>
        <right_flank>TCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTATAAAACATATCAAAACGAACGTAGGCAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATAC</canonical>
            <polymorphic>TCCTATAAAACATATCAAAACGAACGTAGGCAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGARTCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>308 175 168 143 122 47 37</canonical_bands>
                <polymorphic_bands>308 180 175 168 122 47</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCCAGAAGTTTGAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>GCCTAAAATACCCCTTCTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGARTCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11925</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>840799</contig_pos>
        <strand>+</strand>
        <context>CYKMRTCGTC[A/G]AAATCSGCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTC</left_flank>
        <right_flank>AAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACATATCAAAACGAACGTAGGCAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTT</canonical>
            <polymorphic>AAAACATATCAAAACGAACGTAGGCAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCRAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCCAGAAGTTTGAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>GCCTAAAATACCCCTTCTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCRAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11926</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>840805</contig_pos>
        <strand>+</strand>
        <context>CGTCRAAATC[C/G]GCATTYYCRA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATC</left_flank>
        <right_flank>GCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCAAAACGAACGTAGGCAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTG</canonical>
            <polymorphic>TATCAAAACGAACGTAGGCAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCSGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 233 199 67</canonical_bands>
                <polymorphic_bands>700 233 67</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCCAGAAGTTTGAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>GCCTAAAATACCCCTTCTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCSGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11927</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>840811</contig_pos>
        <strand>+</strand>
        <context>AATCSGCATT[C/T]YCRATKGGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATT</left_flank>
        <right_flank>CCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGAACGTAGGCAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACT</canonical>
            <polymorphic>AACGAACGTAGGCAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTYCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCCAGAAGTTTGAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>GCCTAAAATACCCCTTCTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTYCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11928</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>840812</contig_pos>
        <strand>+</strand>
        <context>ATCSGCATTY[C/T]CRATKGGATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTT</left_flank>
        <right_flank>CAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGAACGTAGGCAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTA</canonical>
            <polymorphic>ACGAACGTAGGCAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTYCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCCAGAAGTTTGAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>GCCTAAAATACCCCTTCTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTYCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11929</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>840814</contig_pos>
        <strand>+</strand>
        <context>CSGCATTYYC[A/G]ATKGGATCMG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCC</left_flank>
        <right_flank>ATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACGTAGGCAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACG</canonical>
            <polymorphic>GAACGTAGGCAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCRATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>344 191 157 134 55 41 35 28 10 5</canonical_bands>
                <polymorphic_bands>344 198 191 134 55 35 28 10 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCCAGAAGTTTGAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>GCCTAAAATACCCCTTCTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCRATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11930</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>840817</contig_pos>
        <strand>+</strand>
        <context>CATTYYCRAT[G/T]GGATCMGTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAAT</left_flank>
        <right_flank>GGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTAGGCAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACGTTT</canonical>
            <polymorphic>CGTAGGCAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATKGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>347 191 157 134 55 41 35 28 7 5</canonical_bands>
                <polymorphic_bands>347 198 191 134 55 35 28 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCCAGAAGTTTGAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>GCCTAAAATACCCCTTCTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATKGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11931</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>840823</contig_pos>
        <strand>+</strand>
        <context>CRATKGGATC[A/C]GTGCGATTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATC</left_flank>
        <right_flank>GTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACGTTTTGATAC</canonical>
            <polymorphic>CAATTAATAAAATGCTGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCMGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACGTTTTGATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCCAGAAGTTTGAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>GCCTAAAATACCCCTTCTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCMGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11932</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>840838</contig_pos>
        <strand>+</strand>
        <context>GATTCCAAAC[A/C]GAMGCKASKA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAAC</left_flank>
        <right_flank>GACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACGTTTTGATACAGCTAACAGTAACCG</canonical>
            <polymorphic>TGCTGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACMGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACGTTTTGATACAGCTAACAGTAACCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>504 418 78</canonical_bands>
                <polymorphic_bands>922 78</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCCAGAAGTTTGAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>GCCTAAAATACCCCTTCTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACMGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11933</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>840841</contig_pos>
        <strand>+</strand>
        <context>TCCAAACMGA[A/C]GCKASKAGAC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGA</left_flank>
        <right_flank>GCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACGTTTTGATACAGCTAACAGTAACCGAGA</canonical>
            <polymorphic>TGGTATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGAMGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACGTTTTGATACAGCTAACAGTAACCGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>501 418 81</canonical_bands>
                <polymorphic_bands>919 81</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCCAGAAGTTTGAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>GCCTAAAATACCCCTTCTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGAMGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11934</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>840844</contig_pos>
        <strand>+</strand>
        <context>AAACMGAMGC[G/T]ASKAGACACS</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGC</left_flank>
        <right_flank>ACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACGTTTTGATACAGCTAACAGTAACCGAGATAC</canonical>
            <polymorphic>TATTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCKACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACGTTTTGATACAGCTAACAGTAACCGAGATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCCAGAAGTTTGAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>GCCTAAAATACCCCTTCTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCKACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11935</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>840846</contig_pos>
        <strand>+</strand>
        <context>ACMGAMGCKA[C/G]KAGACACSCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTA</left_flank>
        <right_flank>TAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACGTTTTGATACAGCTAACAGTAACCGAGATACAG</canonical>
            <polymorphic>TTATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTASTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACGTTTTGATACAGCTAACAGTAACCGAGATACAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCCAGAAGTTTGAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>GCCTAAAATACCCCTTCTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTASTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11936</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>840847</contig_pos>
        <strand>+</strand>
        <context>CMGAMGCKAS[G/T]AGACACSCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTAC</left_flank>
        <right_flank>AGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACGTTTTGATACAGCTAACAGTAACCGAGATACAGT</canonical>
            <polymorphic>TATGATAAGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACKAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACGTTTTGATACAGCTAACAGTAACCGAGATACAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCCAGAAGTTTGAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>GCCTAAAATACCCCTTCTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACKAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11937</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>840854</contig_pos>
        <strand>+</strand>
        <context>KASKAGACAC[C/G]CAGCMARRTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACAC</left_flank>
        <right_flank>CAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACGTTTTGATACAGCTAACAGTAACCGAGATACAGTACCGTTC</canonical>
            <polymorphic>AGTATTTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACSCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACGTTTTGATACAGCTAACAGTAACCGAGATACAGTACCGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCCAGAAGTTTGAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>GCCTAAAATACCCCTTCTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACSCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11938</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>840859</contig_pos>
        <strand>+</strand>
        <context>GACACSCAGC[A/C]ARRTCTCCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGC</left_flank>
        <right_flank>AAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACGTTTTGATACAGCTAACAGTAACCGAGATACAGTACCGTTCAATAC</canonical>
            <polymorphic>TTTATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCMAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACGTTTTGATACAGCTAACAGTAACCGAGATACAGTACCGTTCAATAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>186 159 124 117 108 103 81 59 34 16 13</canonical_bands>
                <polymorphic_bands>267 186 124 117 103 81 59 34 16 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCCAGAAGTTTGAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>CTGCCTAAAATACCCCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAG</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCMAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11939</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>840886</contig_pos>
        <strand>+</strand>
        <context>GGAGGACTAC[C/T]GTAGAGAAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTAC</left_flank>
        <right_flank>GTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACGTTTTGATACAGCTAACAGTAACCGAGATACAGTACCGTTCAATACAAAAACGTAATTTTCAAGATTTTAGGT</canonical>
            <polymorphic>TGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACYGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACGTTTTGATACAGCTAACAGTAACCGAGATACAGTACCGTTCAATACAAAAACGTAATTTTCAAGATTTTAGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>468 352 147 33</canonical_bands>
                <polymorphic_bands>468 352 180</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATACTCACGAAACAATCTCAA</pcr_primer_p1>
		<pcr_primer_p2>ATGTGCAAGGGTGAGTAATG</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>AAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACAT</canonical_amplicon>
		<polymorphic_amplicon>AAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACYGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11940</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>840931</contig_pos>
        <strand>+</strand>
        <context>TAGTTGTGAA[C/T]GTGTTGTGCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAA</left_flank>
        <right_flank>GTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACGTTTTGATACAGCTAACAGTAACCGAGATACAGTACCGTTCAATACAAAAACGTAATTTTCAAGATTTTAGGTCACTTTCACAATCAGAAGTCTGGAGCTCGGCTGTCAAGTTTCCGA</canonical>
            <polymorphic>TAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAAYGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACGTTTTGATACAGCTAACAGTAACCGAGATACAGTACCGTTCAATACAAAAACGTAATTTTCAAGATTTTAGGTCACTTTCACAATCAGAAGTCTGGAGCTCGGCTGTCAAGTTTCCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCATTCTCTTGGAGGACTAC</pcr_primer_p1>
		<pcr_primer_p2>GCGAAGACAACAACTCCTATT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGC</canonical_amplicon>
		<polymorphic_amplicon>TCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAAYGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11941</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>842163</contig_pos>
        <strand></strand>
        <context>GATTCTATCC[T/G]TTTCTTTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TGATTGTTTGCATTGAACCGATTGATGCTAATGATCATGTGATTCTATCC</left_flank>
        <right_flank>TTTCTTTTTATCATCAAATTCTTCTGTTGCAGAAAATCTTTATAAGTCAA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGATCGGAAACTTCACAGCCGAGCTTCAGACTCCTGAAAATGCCAAAAAATCAACTGGAAAATATGTTTTTATGGGCTCAAAGTGCAAGTCTAAAGTGACCTTTTATTAGAGGTATACCAAGTGGAAAAGTTAGATACTTCCTCGGGTAGAGGTATTTATGTTATCAATCAATGATAACAACAGATAACAACAAAAGTTTGAACTGTGGTGAACGGAGGGGGGGGGGGGGGGGGGGTAAGACAAGTCAGCAGGTTGTTTTGTTGATTTTCAAAAGTTCGTTGATCAAAATATATTGCGTTCTGTTACTTTGTTATTCTTTAAACTCCATGGAAAGGCATAAGGCACGGTCGGTTGTGTAACAGCATTGTTGTAAAAGTTGTGCTATCGATTCTGAAAAAAGAAATCAAACAAGTAAAAGTTCTAATTGACATGTCAGATTGTACTTTGATTGTTTGCATTGAACCGATTGATGCTAATGATCATGTGATTCTATCCTTTTCTTTTTATCATCAAATTCTTCTGTTGCAGAAAATCTTTATAAGTCAAATTGAAAAAAAAGTCATTCTGGAAGATCTCCATAGTCCTCTATTGCTTTGTAATTCAGTCGCAGAGCTGTAGTTCCATCATCCAATTTCAGAATCTCATTTCCTTTTGAGTCCTTGATATCGGAGTACGGTAGTTCCTTTAGATGCTGAAATTTTTGAAAATATATAATTAAAAACTTCCAAAATCAGCTTGCCTTGAATCCTTGCTTCTCCAGAAGCAACTGGTTTGCTAACGAAGACGTTTCAGATATCACACCACCAATGTTGTATTTCTAAATCGAAACTTTTCAAATTTTTGAATTAGCGGATTCTGAATTCCTGAATATTCCTCTTTGTCATATTGGTATATACCATTTTTGTGGCGATTCCTAGACGAGTGAATTCTGGAGCAACACTTCCCATTTCTCTGAAATACAGTCAGCTGAAATCTTATAATTCAATTTTTTGAAAA</canonical>
            <polymorphic>AAATGATCGGAAACTTCACAGCCGAGCTTCAGACTCCTGAAAATGCCAAAAAATCAACTGGAAAATATGTTTTTATGGGCTCAAAGTGCAAGTCTAAAGTGACCTTTTATTAGAGGTATACCAAGTGGAAAAGTTAGATACTTCCTCGGGTAGAGGTATTTATGTTATCAATCAATGATAACAACAGATAACAACAAAAGTTTGAACTGTGGTGAACGGAGGGGGGGGGGGGGGGGGGGTAAGACAAGTCAGCAGGTTGTTTTGTTGATTTTCAAAAGTTCGTTGATCAAAATATATTGCGTTCTGTTACTTTGTTATTCTTTAAACTCCATGGAAAGGCATAAGGCACGGTCGGTTGTGTAACAGCATTGTTGTAAAAGTTGTGCTATCGATTCTGAAAAAAGAAATCAAACAAGTAAAAGTTCTAATTGACATGTCAGATTGTACTTTGATTGTTTGCATTGAACCGATTGATGCTAATGATCATGTGATTCTATCCKTTTCTTTTTATCATCAAATTCTTCTGTTGCAGAAAATCTTTATAAGTCAAATTGAAAAAAAAGTCATTCTGGAAGATCTCCATAGTCCTCTATTGCTTTGTAATTCAGTCGCAGAGCTGTAGTTCCATCATCCAATTTCAGAATCTCATTTCCTTTTGAGTCCTTGATATCGGAGTACGGTAGTTCCTTTAGATGCTGAAATTTTTGAAAATATATAATTAAAAACTTCCAAAATCAGCTTGCCTTGAATCCTTGCTTCTCCAGAAGCAACTGGTTTGCTAACGAAGACGTTTCAGATATCACACCACCAATGTTGTATTTCTAAATCGAAACTTTTCAAATTTTTGAATTAGCGGATTCTGAATTCCTGAATATTCCTCTTTGTCATATTGGTATATACCATTTTTGTGGCGATTCCTAGACGAGTGAATTCTGGAGCAACACTTCCCATTTCTCTGAAATACAGTCAGCTGAAATCTTATAATTCAATTTTTTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACAGCATTGTTGTAAAAGTTG</pcr_primer_p1>
		<pcr_primer_p2>CTGAATTACAAAGCAATAGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TAACAGCATTGTTGTAAAAGTTGTGCTATCGATTCTGAAAAAAGAAATCAAACAAGTAAAAGTTCTAATTGACATGTCAGATTGTACTTTGATTGTTTGCATTGAACCGATTGATGCTAATGATCATGTGATTCTATCCTTTTCTTTTTATCATCAAATTCTTCTGTTGCAGAAAATCTTTATAAGTCAAATTGAAAAAAAAGTCATTCTGGAAGATCTCCATAGTCCTCTATTGCTTTGTAATTCAG</canonical_amplicon>
		<polymorphic_amplicon>TAACAGCATTGTTGTAAAAGTTGTGCTATCGATTCTGAAAAAAGAAATCAAACAAGTAAAAGTTCTAATTGACATGTCAGATTGTACTTTGATTGTTTGCATTGAACCGATTGATGCTAATGATCATGTGATTCTATCCKTTTCTTTTTATCATCAAATTCTTCTGTTGCAGAAAATCTTTATAAGTCAAATTGAAAAAAAAGTCATTCTGGAAGATCTCCATAGTCCTCTATTGCTTTGTAATTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11942</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>842150</contig_pos>
        <strand></strand>
        <context>CTAATGATCA[T/A]GTGATTCTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCAGATTGTACTTTGATTGTTTGCATTGAACCGATTGATGCTAATGATCA</left_flank>
        <right_flank>GTGATTCTATCCTTTTCTTTTTATCATCAAATTCTTCTGTTGCAGAAAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAAAATTTTCAAAATGATCGGAAACTTCACAGCCGAGCTTCAGACTCCTGAAAATGCCAAAAAATCAACTGGAAAATATGTTTTTATGGGCTCAAAGTGCAAGTCTAAAGTGACCTTTTATTAGAGGTATACCAAGTGGAAAAGTTAGATACTTCCTCGGGTAGAGGTATTTATGTTATCAATCAATGATAACAACAGATAACAACAAAAGTTTGAACTGTGGTGAACGGAGGGGGGGGGGGGGGGGGGGTAAGACAAGTCAGCAGGTTGTTTTGTTGATTTTCAAAAGTTCGTTGATCAAAATATATTGCGTTCTGTTACTTTGTTATTCTTTAAACTCCATGGAAAGGCATAAGGCACGGTCGGTTGTGTAACAGCATTGTTGTAAAAGTTGTGCTATCGATTCTGAAAAAAGAAATCAAACAAGTAAAAGTTCTAATTGACATGTCAGATTGTACTTTGATTGTTTGCATTGAACCGATTGATGCTAATGATCATGTGATTCTATCCTTTTCTTTTTATCATCAAATTCTTCTGTTGCAGAAAATCTTTATAAGTCAAATTGAAAAAAAAGTCATTCTGGAAGATCTCCATAGTCCTCTATTGCTTTGTAATTCAGTCGCAGAGCTGTAGTTCCATCATCCAATTTCAGAATCTCATTTCCTTTTGAGTCCTTGATATCGGAGTACGGTAGTTCCTTTAGATGCTGAAATTTTTGAAAATATATAATTAAAAACTTCCAAAATCAGCTTGCCTTGAATCCTTGCTTCTCCAGAAGCAACTGGTTTGCTAACGAAGACGTTTCAGATATCACACCACCAATGTTGTATTTCTAAATCGAAACTTTTCAAATTTTTGAATTAGCGGATTCTGAATTCCTGAATATTCCTCTTTGTCATATTGGTATATACCATTTTTGTGGCGATTCCTAGACGAGTGAATTCTGGAGCAACACTTCCCATTTCTCTGAAATACAGTCAGCTGAAATCTTATAATTC</canonical>
            <polymorphic>TTCAAAATTTTCAAAATGATCGGAAACTTCACAGCCGAGCTTCAGACTCCTGAAAATGCCAAAAAATCAACTGGAAAATATGTTTTTATGGGCTCAAAGTGCAAGTCTAAAGTGACCTTTTATTAGAGGTATACCAAGTGGAAAAGTTAGATACTTCCTCGGGTAGAGGTATTTATGTTATCAATCAATGATAACAACAGATAACAACAAAAGTTTGAACTGTGGTGAACGGAGGGGGGGGGGGGGGGGGGGTAAGACAAGTCAGCAGGTTGTTTTGTTGATTTTCAAAAGTTCGTTGATCAAAATATATTGCGTTCTGTTACTTTGTTATTCTTTAAACTCCATGGAAAGGCATAAGGCACGGTCGGTTGTGTAACAGCATTGTTGTAAAAGTTGTGCTATCGATTCTGAAAAAAGAAATCAAACAAGTAAAAGTTCTAATTGACATGTCAGATTGTACTTTGATTGTTTGCATTGAACCGATTGATGCTAATGATCAWGTGATTCTATCCTTTTCTTTTTATCATCAAATTCTTCTGTTGCAGAAAATCTTTATAAGTCAAATTGAAAAAAAAGTCATTCTGGAAGATCTCCATAGTCCTCTATTGCTTTGTAATTCAGTCGCAGAGCTGTAGTTCCATCATCCAATTTCAGAATCTCATTTCCTTTTGAGTCCTTGATATCGGAGTACGGTAGTTCCTTTAGATGCTGAAATTTTTGAAAATATATAATTAAAAACTTCCAAAATCAGCTTGCCTTGAATCCTTGCTTCTCCAGAAGCAACTGGTTTGCTAACGAAGACGTTTCAGATATCACACCACCAATGTTGTATTTCTAAATCGAAACTTTTCAAATTTTTGAATTAGCGGATTCTGAATTCCTGAATATTCCTCTTTGTCATATTGGTATATACCATTTTTGTGGCGATTCCTAGACGAGTGAATTCTGGAGCAACACTTCCCATTTCTCTGAAATACAGTCAGCTGAAATCTTATAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 343 103 52</canonical_bands>
                <polymorphic_bands>554 343 103</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAACAGCATTGTTGTAAAAGTTG</pcr_primer_p1>
		<pcr_primer_p2>CTGAATTACAAAGCAATAGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TAACAGCATTGTTGTAAAAGTTGTGCTATCGATTCTGAAAAAAGAAATCAAACAAGTAAAAGTTCTAATTGACATGTCAGATTGTACTTTGATTGTTTGCATTGAACCGATTGATGCTAATGATCATGTGATTCTATCCTTTTCTTTTTATCATCAAATTCTTCTGTTGCAGAAAATCTTTATAAGTCAAATTGAAAAAAAAGTCATTCTGGAAGATCTCCATAGTCCTCTATTGCTTTGTAATTCAG</canonical_amplicon>
		<polymorphic_amplicon>TAACAGCATTGTTGTAAAAGTTGTGCTATCGATTCTGAAAAAAGAAATCAAACAAGTAAAAGTTCTAATTGACATGTCAGATTGTACTTTGATTGTTTGCATTGAACCGATTGATGCTAATGATCAWGTGATTCTATCCTTTTCTTTTTATCATCAAATTCTTCTGTTGCAGAAAATCTTTATAAGTCAAATTGAAAAAAAAGTCATTCTGGAAGATCTCCATAGTCCTCTATTGCTTTGTAATTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11943</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>842098</contig_pos>
        <strand></strand>
        <context>CTAATTGACA[T/G]GTCAGATTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GCTATCGATTCTGAAAAAAGAAATCAAACAAGTAAAAGTTCTAATTGACA</left_flank>
        <right_flank>GTCAGATTGTACTTTGATTGTTTGCATTGAACCGATTGATGCTAATGATC</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAGAAAACTTCTGCCACTGCGAAGTTTTCAATCTAGATCTGTTTCACACCATTCAAAATTTTCAAAATGATCGGAAACTTCACAGCCGAGCTTCAGACTCCTGAAAATGCCAAAAAATCAACTGGAAAATATGTTTTTATGGGCTCAAAGTGCAAGTCTAAAGTGACCTTTTATTAGAGGTATACCAAGTGGAAAAGTTAGATACTTCCTCGGGTAGAGGTATTTATGTTATCAATCAATGATAACAACAGATAACAACAAAAGTTTGAACTGTGGTGAACGGAGGGGGGGGGGGGGGGGGGGTAAGACAAGTCAGCAGGTTGTTTTGTTGATTTTCAAAAGTTCGTTGATCAAAATATATTGCGTTCTGTTACTTTGTTATTCTTTAAACTCCATGGAAAGGCATAAGGCACGGTCGGTTGTGTAACAGCATTGTTGTAAAAGTTGTGCTATCGATTCTGAAAAAAGAAATCAAACAAGTAAAAGTTCTAATTGACATGTCAGATTGTACTTTGATTGTTTGCATTGAACCGATTGATGCTAATGATCATGTGATTCTATCCTTTTCTTTTTATCATCAAATTCTTCTGTTGCAGAAAATCTTTATAAGTCAAATTGAAAAAAAAGTCATTCTGGAAGATCTCCATAGTCCTCTATTGCTTTGTAATTCAGTCGCAGAGCTGTAGTTCCATCATCCAATTTCAGAATCTCATTTCCTTTTGAGTCCTTGATATCGGAGTACGGTAGTTCCTTTAGATGCTGAAATTTTTGAAAATATATAATTAAAAACTTCCAAAATCAGCTTGCCTTGAATCCTTGCTTCTCCAGAAGCAACTGGTTTGCTAACGAAGACGTTTCAGATATCACACCACCAATGTTGTATTTCTAAATCGAAACTTTTCAAATTTTTGAATTAGCGGATTCTGAATTCCTGAATATTCCTCTTTGTCATATTGGTATATACCATTTTTGTGGCGATTCCTAGACGAGTGAATTCTG</canonical>
            <polymorphic>CTAGAAAACTTCTGCCACTGCGAAGTTTTCAATCTAGATCTGTTTCACACCATTCAAAATTTTCAAAATGATCGGAAACTTCACAGCCGAGCTTCAGACTCCTGAAAATGCCAAAAAATCAACTGGAAAATATGTTTTTATGGGCTCAAAGTGCAAGTCTAAAGTGACCTTTTATTAGAGGTATACCAAGTGGAAAAGTTAGATACTTCCTCGGGTAGAGGTATTTATGTTATCAATCAATGATAACAACAGATAACAACAAAAGTTTGAACTGTGGTGAACGGAGGGGGGGGGGGGGGGGGGGTAAGACAAGTCAGCAGGTTGTTTTGTTGATTTTCAAAAGTTCGTTGATCAAAATATATTGCGTTCTGTTACTTTGTTATTCTTTAAACTCCATGGAAAGGCATAAGGCACGGTCGGTTGTGTAACAGCATTGTTGTAAAAGTTGTGCTATCGATTCTGAAAAAAGAAATCAAACAAGTAAAAGTTCTAATTGACAKGTCAGATTGTACTTTGATTGTTTGCATTGAACCGATTGATGCTAATGATCATGTGATTCTATCCTTTTCTTTTTATCATCAAATTCTTCTGTTGCAGAAAATCTTTATAAGTCAAATTGAAAAAAAAGTCATTCTGGAAGATCTCCATAGTCCTCTATTGCTTTGTAATTCAGTCGCAGAGCTGTAGTTCCATCATCCAATTTCAGAATCTCATTTCCTTTTGAGTCCTTGATATCGGAGTACGGTAGTTCCTTTAGATGCTGAAATTTTTGAAAATATATAATTAAAAACTTCCAAAATCAGCTTGCCTTGAATCCTTGCTTCTCCAGAAGCAACTGGTTTGCTAACGAAGACGTTTCAGATATCACACCACCAATGTTGTATTTCTAAATCGAAACTTTTCAAATTTTTGAATTAGCGGATTCTGAATTCCTGAATATTCCTCTTTGTCATATTGGTATATACCATTTTTGTGGCGATTCCTAGACGAGTGAATTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>450 395 103 52</canonical_bands>
                <polymorphic_bands>450 395 155</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAACAGCATTGTTGTAAAAGTTG</pcr_primer_p1>
		<pcr_primer_p2>CTGAATTACAAAGCAATAGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TAACAGCATTGTTGTAAAAGTTGTGCTATCGATTCTGAAAAAAGAAATCAAACAAGTAAAAGTTCTAATTGACATGTCAGATTGTACTTTGATTGTTTGCATTGAACCGATTGATGCTAATGATCATGTGATTCTATCCTTTTCTTTTTATCATCAAATTCTTCTGTTGCAGAAAATCTTTATAAGTCAAATTGAAAAAAAAGTCATTCTGGAAGATCTCCATAGTCCTCTATTGCTTTGTAATTCAG</canonical_amplicon>
		<polymorphic_amplicon>TAACAGCATTGTTGTAAAAGTTGTGCTATCGATTCTGAAAAAAGAAATCAAACAAGTAAAAGTTCTAATTGACAKGTCAGATTGTACTTTGATTGTTTGCATTGAACCGATTGATGCTAATGATCATGTGATTCTATCCTTTTCTTTTTATCATCAAATTCTTCTGTTGCAGAAAATCTTTATAAGTCAAATTGAAAAAAAAGTCATTCTGGAAGATCTCCATAGTCCTCTATTGCTTTGTAATTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11944</snp_id>
        <super_contig>c006000967.Contig1</super_contig>
        <contig_pos>7574</contig_pos>
        <strand>+</strand>
        <context>AATTCTATAA[A/G]TTTTGATAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTCATACATGTGCCTCAAACTATTCTTCCGTTACATAGAATTCTATAA</left_flank>
        <right_flank>TTTTGATAAATTAATTTTTCAAACAGAATGAACATTAGCAGCTATTAGCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAAAGTTAACAGTCTGGAACAAGGCACTCCCGGCTGCTGTTTTATTTCACGTGGAGCGCATATGCATATCTGAACTTTAGCCACTGAAAATGTGTCGGTTATCAAAGTTAAAAAATACGAAGTTTTAGAAAATGAAAAAGGATTAGTTTCAATATTGATTTTTTTCCTGACAATATCTGCCTGAGTTTTTTAAAATGTGTAGTCTCATTCTTGTCTTTGAGCATGTCAGCAAATGAAAGTTAGAGTTTTTTTCATTCGGTCTATATTCACGTTATTATCACTCTATATTTTGTATTTTCCTACCCTTATTTAAGGAATGTGTTTTGAAAATGCAAAATTATTGCAGCTTCGAACCGTGCCCATAAAACGAACGTAAGATCGCTTCCTTTAAGTTTTCCGAAACTTACGATCTTTTGGTTTCCCAAGCTTACCAGTTTCAAAATCAAGAATTCATACATGTGCCTCAAACTATTCTTCCGTTACATAGAATTCTATAAGTTTTGATAAATTAATTTTTCAAACAGAATGAACATTAGCAGCTATTAGCTGTACGAATTTTGCCGGTTTAGAAATCTCCGGATCAAACTAATCAATTGACTTGAGTATCTTATTTTTGAAACGAAAGTTGAAAATCATCTCAAAAACTAATTTGATAACTATTTGAATTTTTTGGTTTTTCTTATCAGACAATGTCATTCGACGCTTAATCTATGCTTCGAGATTGAACTTGATAGAGCAGTTTGAAGCACTAATCATATCGAGTTTGCTGCTCTCTGCCCTAAAACGGTTTTTGTTTTCTCTTCGCCTCCGCTTTCTTTATAGTTTGGAAACCCTCCAATCTTTATTGTTGCTCTTTTTGCTTCATAGTTGATTTTTTTTCCCACATTGATTTTTTTTTCTGATTTCCTCCTTAAAATTTCATTCTAATTCATAGTATTTTTTTCAGACTATTTGGGCATTTTTGTGAACAGAAAAATGTAAATCTCTATGAATTAACA</canonical>
            <polymorphic>TAAAAAGTTAACAGTCTGGAACAAGGCACTCCCGGCTGCTGTTTTATTTCACGTGGAGCGCATATGCATATCTGAACTTTAGCCACTGAAAATGTGTCGGTTATCAAAGTTAAAAAATACGAAGTTTTAGAAAATGAAAAAGGATTAGTTTCAATATTGATTTTTTTCCTGACAATATCTGCCTGAGTTTTTTAAAATGTGTAGTCTCATTCTTGTCTTTGAGCATGTCAGCAAATGAAAGTTAGAGTTTTTTTCATTCGGTCTATATTCACGTTATTATCACTCTATATTTTGTATTTTCCTACCCTTATTTAAGGAATGTGTTTTGAAAATGCAAAATTATTGCAGCTTCGAACCGTGCCCATAAAACGAACGTAAGATCGCTTCCTTTAAGTTTTCCGAAACTTACGATCTTTTGGTTTCCCAAGCTTACCAGTTTCAAAATCAAGAATTCATACATGTGCCTCAAACTATTCTTCCGTTACATAGAATTCTATAARTTTTGATAAATTAATTTTTCAAACAGAATGAACATTAGCAGCTATTAGCTGTACGAATTTTGCCGGTTTAGAAATCTCCGGATCAAACTAATCAATTGACTTGAGTATCTTATTTTTGAAACGAAAGTTGAAAATCATCTCAAAAACTAATTTGATAACTATTTGAATTTTTTGGTTTTTCTTATCAGACAATGTCATTCGACGCTTAATCTATGCTTCGAGATTGAACTTGATAGAGCAGTTTGAAGCACTAATCATATCGAGTTTGCTGCTCTCTGCCCTAAAACGGTTTTTGTTTTCTCTTCGCCTCCGCTTTCTTTATAGTTTGGAAACCCTCCAATCTTTATTGTTGCTCTTTTTGCTTCATAGTTGATTTTTTTTCCCACATTGATTTTTTTTTCTGATTTCCTCCTTAAAATTTCATTCTAATTCATAGTATTTTTTTCAGACTATTTGGGCATTTTTGTGAACAGAAAAATGTAAATCTCTATGAATTAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGATCGCTTCCTTTAAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCGTTTCAAAAATAAGATACTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAGATCGCTTCCTTTAAGTTTTCCGAAACTTACGATCTTTTGGTTTCCCAAGCTTACCAGTTTCAAAATCAAGAATTCATACATGTGCCTCAAACTATTCTTCCGTTACATAGAATTCTATAAGTTTTGATAAATTAATTTTTCAAACAGAATGAACATTAGCAGCTATTAGCTGTACGAATTTTGCCGGTTTAGAAATCTCCGGATCAAACTAATCAATTGACTTGAGTATCTTATTTTTGAAACGAA</canonical_amplicon>
		<polymorphic_amplicon>TAAGATCGCTTCCTTTAAGTTTTCCGAAACTTACGATCTTTTGGTTTCCCAAGCTTACCAGTTTCAAAATCAAGAATTCATACATGTGCCTCAAACTATTCTTCCGTTACATAGAATTCTATAARTTTTGATAAATTAATTTTTCAAACAGAATGAACATTAGCAGCTATTAGCTGTACGAATTTTGCCGGTTTAGAAATCTCCGGATCAAACTAATCAATTGACTTGAGTATCTTATTTTTGAAACGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11945</snp_id>
        <super_contig>c006000967.Contig1</super_contig>
        <contig_pos>7610</contig_pos>
        <strand>+</strand>
        <context>GAATGAACAT[C/T]AGCAGCTATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAGAATTCTATAAGTTTTGATAAATTAATTTTTCAAACAGAATGAACAT</left_flank>
        <right_flank>AGCAGCTATTAGCTGTACGAATTTTGCCGGTTTAGAAATCTCCGGATCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTGTTTTATTTCACGTGGAGCGCATATGCATATCTGAACTTTAGCCACTGAAAATGTGTCGGTTATCAAAGTTAAAAAATACGAAGTTTTAGAAAATGAAAAAGGATTAGTTTCAATATTGATTTTTTTCCTGACAATATCTGCCTGAGTTTTTTAAAATGTGTAGTCTCATTCTTGTCTTTGAGCATGTCAGCAAATGAAAGTTAGAGTTTTTTTCATTCGGTCTATATTCACGTTATTATCACTCTATATTTTGTATTTTCCTACCCTTATTTAAGGAATGTGTTTTGAAAATGCAAAATTATTGCAGCTTCGAACCGTGCCCATAAAACGAACGTAAGATCGCTTCCTTTAAGTTTTCCGAAACTTACGATCTTTTGGTTTCCCAAGCTTACCAGTTTCAAAATCAAGAATTCATACATGTGCCTCAAACTATTCTTCCGTTACATAGAATTCTATAAGTTTTGATAAATTAATTTTTCAAACAGAATGAACATTAGCAGCTATTAGCTGTACGAATTTTGCCGGTTTAGAAATCTCCGGATCAAACTAATCAATTGACTTGAGTATCTTATTTTTGAAACGAAAGTTGAAAATCATCTCAAAAACTAATTTGATAACTATTTGAATTTTTTGGTTTTTCTTATCAGACAATGTCATTCGACGCTTAATCTATGCTTCGAGATTGAACTTGATAGAGCAGTTTGAAGCACTAATCATATCGAGTTTGCTGCTCTCTGCCCTAAAACGGTTTTTGTTTTCTCTTCGCCTCCGCTTTCTTTATAGTTTGGAAACCCTCCAATCTTTATTGTTGCTCTTTTTGCTTCATAGTTGATTTTTTTTCCCACATTGATTTTTTTTTCTGATTTCCTCCTTAAAATTTCATTCTAATTCATAGTATTTTTTTCAGACTATTTGGGCATTTTTGTGAACAGAAAAATGTAAATCTCTATGAATTAACAATTCGATTTTTAAAAATATAGAATGCTTTGGTACTT</canonical>
            <polymorphic>TGCTGTTTTATTTCACGTGGAGCGCATATGCATATCTGAACTTTAGCCACTGAAAATGTGTCGGTTATCAAAGTTAAAAAATACGAAGTTTTAGAAAATGAAAAAGGATTAGTTTCAATATTGATTTTTTTCCTGACAATATCTGCCTGAGTTTTTTAAAATGTGTAGTCTCATTCTTGTCTTTGAGCATGTCAGCAAATGAAAGTTAGAGTTTTTTTCATTCGGTCTATATTCACGTTATTATCACTCTATATTTTGTATTTTCCTACCCTTATTTAAGGAATGTGTTTTGAAAATGCAAAATTATTGCAGCTTCGAACCGTGCCCATAAAACGAACGTAAGATCGCTTCCTTTAAGTTTTCCGAAACTTACGATCTTTTGGTTTCCCAAGCTTACCAGTTTCAAAATCAAGAATTCATACATGTGCCTCAAACTATTCTTCCGTTACATAGAATTCTATAAGTTTTGATAAATTAATTTTTCAAACAGAATGAACATYAGCAGCTATTAGCTGTACGAATTTTGCCGGTTTAGAAATCTCCGGATCAAACTAATCAATTGACTTGAGTATCTTATTTTTGAAACGAAAGTTGAAAATCATCTCAAAAACTAATTTGATAACTATTTGAATTTTTTGGTTTTTCTTATCAGACAATGTCATTCGACGCTTAATCTATGCTTCGAGATTGAACTTGATAGAGCAGTTTGAAGCACTAATCATATCGAGTTTGCTGCTCTCTGCCCTAAAACGGTTTTTGTTTTCTCTTCGCCTCCGCTTTCTTTATAGTTTGGAAACCCTCCAATCTTTATTGTTGCTCTTTTTGCTTCATAGTTGATTTTTTTTCCCACATTGATTTTTTTTTCTGATTTCCTCCTTAAAATTTCATTCTAATTCATAGTATTTTTTTCAGACTATTTGGGCATTTTTGTGAACAGAAAAATGTAAATCTCTATGAATTAACAATTCGATTTTTAAAAATATAGAATGCTTTGGTACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGATCGCTTCCTTTAAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCGTTTCAAAAATAAGATACTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAGATCGCTTCCTTTAAGTTTTCCGAAACTTACGATCTTTTGGTTTCCCAAGCTTACCAGTTTCAAAATCAAGAATTCATACATGTGCCTCAAACTATTCTTCCGTTACATAGAATTCTATAAGTTTTGATAAATTAATTTTTCAAACAGAATGAACATTAGCAGCTATTAGCTGTACGAATTTTGCCGGTTTAGAAATCTCCGGATCAAACTAATCAATTGACTTGAGTATCTTATTTTTGAAACGAA</canonical_amplicon>
		<polymorphic_amplicon>TAAGATCGCTTCCTTTAAGTTTTCCGAAACTTACGATCTTTTGGTTTCCCAAGCTTACCAGTTTCAAAATCAAGAATTCATACATGTGCCTCAAACTATTCTTCCGTTACATAGAATTCTATAAGTTTTGATAAATTAATTTTTCAAACAGAATGAACATYAGCAGCTATTAGCTGTACGAATTTTGCCGGTTTAGAAATCTCCGGATCAAACTAATCAATTGACTTGAGTATCTTATTTTTGAAACGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11946</snp_id>
        <super_contig>c006000967.Contig1</super_contig>
        <contig_pos>7622</contig_pos>
        <strand>+</strand>
        <context>GCAGCTATTA[G/T]CTGTACGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGTTTTGATAAATTAATTTTTCAAACAGAATGAACATTAGCAGCTATTA</left_flank>
        <right_flank>CTGTACGAATTTTGCCGGTTTAGAAATCTCCGGATCAAACTAATCAATTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACGTGGAGCGCATATGCATATCTGAACTTTAGCCACTGAAAATGTGTCGGTTATCAAAGTTAAAAAATACGAAGTTTTAGAAAATGAAAAAGGATTAGTTTCAATATTGATTTTTTTCCTGACAATATCTGCCTGAGTTTTTTAAAATGTGTAGTCTCATTCTTGTCTTTGAGCATGTCAGCAAATGAAAGTTAGAGTTTTTTTCATTCGGTCTATATTCACGTTATTATCACTCTATATTTTGTATTTTCCTACCCTTATTTAAGGAATGTGTTTTGAAAATGCAAAATTATTGCAGCTTCGAACCGTGCCCATAAAACGAACGTAAGATCGCTTCCTTTAAGTTTTCCGAAACTTACGATCTTTTGGTTTCCCAAGCTTACCAGTTTCAAAATCAAGAATTCATACATGTGCCTCAAACTATTCTTCCGTTACATAGAATTCTATAAGTTTTGATAAATTAATTTTTCAAACAGAATGAACATTAGCAGCTATTAGCTGTACGAATTTTGCCGGTTTAGAAATCTCCGGATCAAACTAATCAATTGACTTGAGTATCTTATTTTTGAAACGAAAGTTGAAAATCATCTCAAAAACTAATTTGATAACTATTTGAATTTTTTGGTTTTTCTTATCAGACAATGTCATTCGACGCTTAATCTATGCTTCGAGATTGAACTTGATAGAGCAGTTTGAAGCACTAATCATATCGAGTTTGCTGCTCTCTGCCCTAAAACGGTTTTTGTTTTCTCTTCGCCTCCGCTTTCTTTATAGTTTGGAAACCCTCCAATCTTTATTGTTGCTCTTTTTGCTTCATAGTTGATTTTTTTTCCCACATTGATTTTTTTTTCTGATTTCCTCCTTAAAATTTCATTCTAATTCATAGTATTTTTTTCAGACTATTTGGGCATTTTTGTGAACAGAAAAATGTAAATCTCTATGAATTAACAATTCGATTTTTAAAAATATAGAATGCTTTGGTACTTTCTCTTCAATAT</canonical>
            <polymorphic>TCACGTGGAGCGCATATGCATATCTGAACTTTAGCCACTGAAAATGTGTCGGTTATCAAAGTTAAAAAATACGAAGTTTTAGAAAATGAAAAAGGATTAGTTTCAATATTGATTTTTTTCCTGACAATATCTGCCTGAGTTTTTTAAAATGTGTAGTCTCATTCTTGTCTTTGAGCATGTCAGCAAATGAAAGTTAGAGTTTTTTTCATTCGGTCTATATTCACGTTATTATCACTCTATATTTTGTATTTTCCTACCCTTATTTAAGGAATGTGTTTTGAAAATGCAAAATTATTGCAGCTTCGAACCGTGCCCATAAAACGAACGTAAGATCGCTTCCTTTAAGTTTTCCGAAACTTACGATCTTTTGGTTTCCCAAGCTTACCAGTTTCAAAATCAAGAATTCATACATGTGCCTCAAACTATTCTTCCGTTACATAGAATTCTATAAGTTTTGATAAATTAATTTTTCAAACAGAATGAACATTAGCAGCTATTAKCTGTACGAATTTTGCCGGTTTAGAAATCTCCGGATCAAACTAATCAATTGACTTGAGTATCTTATTTTTGAAACGAAAGTTGAAAATCATCTCAAAAACTAATTTGATAACTATTTGAATTTTTTGGTTTTTCTTATCAGACAATGTCATTCGACGCTTAATCTATGCTTCGAGATTGAACTTGATAGAGCAGTTTGAAGCACTAATCATATCGAGTTTGCTGCTCTCTGCCCTAAAACGGTTTTTGTTTTCTCTTCGCCTCCGCTTTCTTTATAGTTTGGAAACCCTCCAATCTTTATTGTTGCTCTTTTTGCTTCATAGTTGATTTTTTTTCCCACATTGATTTTTTTTTCTGATTTCCTCCTTAAAATTTCATTCTAATTCATAGTATTTTTTTCAGACTATTTGGGCATTTTTGTGAACAGAAAAATGTAAATCTCTATGAATTAACAATTCGATTTTTAAAAATATAGAATGCTTTGGTACTTTCTCTTCAATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>500 300 113 80 7</canonical_bands>
                <polymorphic_bands>507 300 113 80</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>500 266 113 80 34 7</canonical_bands>
                <polymorphic_bands>507 266 113 80 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAGATCGCTTCCTTTAAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCGTTTCAAAAATAAGATACTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAGATCGCTTCCTTTAAGTTTTCCGAAACTTACGATCTTTTGGTTTCCCAAGCTTACCAGTTTCAAAATCAAGAATTCATACATGTGCCTCAAACTATTCTTCCGTTACATAGAATTCTATAAGTTTTGATAAATTAATTTTTCAAACAGAATGAACATTAGCAGCTATTAGCTGTACGAATTTTGCCGGTTTAGAAATCTCCGGATCAAACTAATCAATTGACTTGAGTATCTTATTTTTGAAACGAA</canonical_amplicon>
		<polymorphic_amplicon>TAAGATCGCTTCCTTTAAGTTTTCCGAAACTTACGATCTTTTGGTTTCCCAAGCTTACCAGTTTCAAAATCAAGAATTCATACATGTGCCTCAAACTATTCTTCCGTTACATAGAATTCTATAAGTTTTGATAAATTAATTTTTCAAACAGAATGAACATTAGCAGCTATTAKCTGTACGAATTTTGCCGGTTTAGAAATCTCCGGATCAAACTAATCAATTGACTTGAGTATCTTATTTTTGAAACGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11947</snp_id>
        <super_contig>c006000967.Contig1</super_contig>
        <contig_pos>9922</contig_pos>
        <strand>+</strand>
        <context>AGTCACAAAG[A/C]TTTAGACGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGCAGTTCATTGTTAATTTTTTCGAGTCAAAAAGATGAATAGTCACAAAG</left_flank>
        <right_flank>TTTAGACGTTCCTTCACCTGTTATACTCACAATCACTTCATTTGATATTA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACTTCACGTACATGCGTGAAGTCGAATATTCAATTTTTGGAACTTCTGAAGTTCCAAAAAATACAACTACTGTAAAAACTCTGGATTATGAGGAATAGAACTTGAATATCCGCAGAACTGAGAAATCGTAATGATATTCTCTGTTACGATAAATATTAGATACGCTTTGACAAATTCTAGAAAACGTTGATTCTGAAAACGTTTTTTTTCCATTTTTTAGCAACCGTACAAATCTTTATAATACATCTTTTTAGGCGTCTTACTGAAATGAATACTTCTCAGAAGTTTTAAGACTTCGAAATTTTTTCCAAATTCAATCAAAAACTCGAATGCTTAGTTCTGCTCGAACTCCAAATGTGCAATAGTTTTCCAACATTTTCTAACGTTCCGTGTTTGGAACTTTCAAAGTATTCATTTTGGGAATGAGGAGTGTGAACCTATCGTTATCGCAGTTCATTGTTAATTTTTTCGAGTCAAAAAGATGAATAGTCACAAAGATTTAGACGTTCCTTCACCTGTTATACTCACAATCACTTCATTTGATATTACTTTTTTGTTGTGTTGTTTTTTATTAAAAATAACAAAAAAAGTAACTCGGTATAAAAACTACGAACTGATATGACAAGTGAAGAGAAAAATGAGAATTCCTTTATTTTCTGTTTTCGTTTCATGCTATGGTCTAGATCTTCCAGAACCATTCGATTTCATAGAAAATGCCATTTTGAAGTAAGTCCAACATTTTTGTGAATCAAAACTCATTATAGAATCACACATTCAGCTATGTAAACCATAGTGTAGATCCTTGCGACAACTTCTATCGTTATGCATGCTCTTTCGATATCCCGGGTTCGCCAATAGAAAATTCTGTTGCAGACATATACATATAACTATGCTAAAAAACTTCAAAACAACTCTTTTTGGAACAAGTTAGAAATCACTGTGAGGCGGAGGTGCTTATTTCTCAAATGTTTTTATCGTGTTTAGAATGAATTTGATTT</canonical>
            <polymorphic>CGACTTCACGTACATGCGTGAAGTCGAATATTCAATTTTTGGAACTTCTGAAGTTCCAAAAAATACAACTACTGTAAAAACTCTGGATTATGAGGAATAGAACTTGAATATCCGCAGAACTGAGAAATCGTAATGATATTCTCTGTTACGATAAATATTAGATACGCTTTGACAAATTCTAGAAAACGTTGATTCTGAAAACGTTTTTTTTCCATTTTTTAGCAACCGTACAAATCTTTATAATACATCTTTTTAGGCGTCTTACTGAAATGAATACTTCTCAGAAGTTTTAAGACTTCGAAATTTTTTCCAAATTCAATCAAAAACTCGAATGCTTAGTTCTGCTCGAACTCCAAATGTGCAATAGTTTTCCAACATTTTCTAACGTTCCGTGTTTGGAACTTTCAAAGTATTCATTTTGGGAATGAGGAGTGTGAACCTATCGTTATCGCAGTTCATTGTTAATTTTTTCGAGTCAAAAAGATGAATAGTCACAAAGMTTTAGACGTTCCTTCACCTGTTATACTCACAATCACTTCATTTGATATTACTTTTTTGTTGTGTTGTTTTTTATTAAAAATAACAAAAAAAGTAACTCGGTATAAAAACTACGAACTGATATGACAAGTGAAGAGAAAAATGAGAATTCCTTTATTTTCTGTTTTCGTTTCATGCTATGGTCTAGATCTTCCAGAACCATTCGATTTCATAGAAAATGCCATTTTGAAGTAAGTCCAACATTTTTGTGAATCAAAACTCATTATAGAATCACACATTCAGCTATGTAAACCATAGTGTAGATCCTTGCGACAACTTCTATCGTTATGCATGCTCTTTCGATATCCCGGGTTCGCCAATAGAAAATTCTGTTGCAGACATATACATATAACTATGCTAAAAAACTTCAAAACAACTCTTTTTGGAACAAGTTAGAAATCACTGTGAGGCGGAGGTGCTTATTTCTCAAATGTTTTTATCGTGTTTAGAATGAATTTGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATCGCAGTTCATTGTTAATTT</pcr_primer_p1>
		<pcr_primer_p2>GAAGATCTAGACCATAGCATGAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTATCGCAGTTCATTGTTAATTTTTTCGAGTCAAAAAGATGAATAGTCACAAAGATTTAGACGTTCCTTCACCTGTTATACTCACAATCACTTCATTTGATATTACTTTTTTGTTGTGTTGTTTTTTATTAAAAATAACAAAAAAAGTAACTCGGTATAAAAACTACGAACTGATATGACAAGTGAAGAGAAAAATGAGAATTCCTTTATTTTCTGTTTTCGTTTCATGCTATGGTCTAGATCTTC</canonical_amplicon>
		<polymorphic_amplicon>TTATCGCAGTTCATTGTTAATTTTTTCGAGTCAAAAAGATGAATAGTCACAAAGMTTTAGACGTTCCTTCACCTGTTATACTCACAATCACTTCATTTGATATTACTTTTTTGTTGTGTTGTTTTTTATTAAAAATAACAAAAAAAGTAACTCGGTATAAAAACTACGAACTGATATGACAAGTGAAGAGAAAAATGAGAATTCCTTTATTTTCTGTTTTCGTTTCATGCTATGGTCTAGATCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11948</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>16510</contig_pos>
        <strand></strand>
        <context>AGATTCATGT[A/T]AATATGGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCGCAAATTGAAACAGAAAAATGTATTTTTTTTGCGAAAAGATTCATGT</left_flank>
        <right_flank>AATATGGTTTATAAGCATAATTGTCAAACAACTTAATGATTCATAAATTG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAAAGTTTTATTACTTGAAATTCAGGGTGAGTATGGAGGAGATAAAGATGAAAGTGAAAAAATTGGTAGTGGATGAGAGACGGAGAACGAAATACGATTGAGCCAAAACTAGCAAACAAGAAATGAAAATTTCTATGACTTTGTTTTGACGGAATTCCTCTCTTTTCCAACTGCCACTTATTTTATCTCATCCCTTTTCTCCCTAAGATGCCCATTTTTCTTGGGATATCCATAAACATGGGGTTCGGTATCAACACTGAAAAAGAATAGAACATTAGCGCCAGATAATTCAAGTAAAATGAAACAAAAACAAAATTACACATGTTAATATTTGATAAACCCAGAATGTGTTTTATTTGAGAGAGTCTACCGTAACTAGGTATCCGGTTCACACCTTCTGGTTCGGAACTTAGAAGATTACAAAATATAAAATTATATATATTTGAAATCGCAAATTGAAACAGAAAAATGTATTTTTTTTGCGAAAAGATTCATGTAAATATGGTTTATAAGCATAATTGTCAAACAACTTAATGATTCATAAATTGCAAGTAAAAGACTGAAATAGGCATGCTACAAAGGCATTCTGTCAAAAACAGTAACATTGACCAATAAACGTCCACTATACTTTTATTTTATCATCTTGGCAATAGAAACACATTTCGTGACTAGCAAGTATGTTCTAATAAATGCTCAAACTGAATAATAACCTGAACGAACGCGGACCTTTTTTGTTTTCTCAAGCGTGTAGAAAAAATAGGAACGACACCGGAATCTCATATTTTCTTTTTTTTTGGTCAAAGATGTGATGGTGGGCAGGCGGGGCAGAAAAAGAACAAAAACGAAGAAGAAGTAGAGTCTGTGGTGGAATAATTGAAAAACCAGCGACGAATCAACGAGAAAAAGAATGAAAAACACGTAGGAGTAGGGCATGTAGATCTGGGTGCATTCATAGATAACAAAGTGAACAGGACAAATATAGAGAGAACACAATAGCT</canonical>
            <polymorphic>CTCAAAGTTTTATTACTTGAAATTCAGGGTGAGTATGGAGGAGATAAAGATGAAAGTGAAAAAATTGGTAGTGGATGAGAGACGGAGAACGAAATACGATTGAGCCAAAACTAGCAAACAAGAAATGAAAATTTCTATGACTTTGTTTTGACGGAATTCCTCTCTTTTCCAACTGCCACTTATTTTATCTCATCCCTTTTCTCCCTAAGATGCCCATTTTTCTTGGGATATCCATAAACATGGGGTTCGGTATCAACACTGAAAAAGAATAGAACATTAGCGCCAGATAATTCAAGTAAAATGAAACAAAAACAAAATTACACATGTTAATATTTGATAAACCCAGAATGTGTTTTATTTGAGAGAGTCTACCGTAACTAGGTATCCGGTTCACACCTTCTGGTTCGGAACTTAGAAGATTACAAAATATAAAATTATATATATTTGAAATCGCAAATTGAAACAGAAAAATGTATTTTTTTTGCGAAAAGATTCATGTWAATATGGTTTATAAGCATAATTGTCAAACAACTTAATGATTCATAAATTGCAAGTAAAAGACTGAAATAGGCATGCTACAAAGGCATTCTGTCAAAAACAGTAACATTGACCAATAAACGTCCACTATACTTTTATTTTATCATCTTGGCAATAGAAACACATTTCGTGACTAGCAAGTATGTTCTAATAAATGCTCAAACTGAATAATAACCTGAACGAACGCGGACCTTTTTTGTTTTCTCAAGCGTGTAGAAAAAATAGGAACGACACCGGAATCTCATATTTTCTTTTTTTTTGGTCAAAGATGTGATGGTGGGCAGGCGGGGCAGAAAAAGAACAAAAACGAAGAAGAAGTAGAGTCTGTGGTGGAATAATTGAAAAACCAGCGACGAATCAACGAGAAAAAGAATGAAAAACACGTAGGAGTAGGGCATGTAGATCTGGGTGCATTCATAGATAACAAAGTGAACAGGACAAATATAGAGAGAACACAATAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGAGAGTCTACCGTAACTAGG</pcr_primer_p1>
		<pcr_primer_p2>TCAATGTTACTGTTTTTGACAGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGAGAGAGTCTACCGTAACTAGGTATCCGGTTCACACCTTCTGGTTCGGAACTTAGAAGATTACAAAATATAAAATTATATATATTTGAAATCGCAAATTGAAACAGAAAAATGTATTTTTTTTGCGAAAAGATTCATGTAAATATGGTTTATAAGCATAATTGTCAAACAACTTAATGATTCATAAATTGCAAGTAAAAGACTGAAATAGGCATGCTACAAAGGCATTCTGTCAAAAACAGTAACATTGA</canonical_amplicon>
		<polymorphic_amplicon>TGAGAGAGTCTACCGTAACTAGGTATCCGGTTCACACCTTCTGGTTCGGAACTTAGAAGATTACAAAATATAAAATTATATATATTTGAAATCGCAAATTGAAACAGAAAAATGTATTTTTTTTGCGAAAAGATTCATGTWAATATGGTTTATAAGCATAATTGTCAAACAACTTAATGATTCATAAATTGCAAGTAAAAGACTGAAATAGGCATGCTACAAAGGCATTCTGTCAAAAACAGTAACATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11972</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>16129</contig_pos>
        <strand>+</strand>
        <context>AACTAGCAAA[A/C]AAGAAATGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAGTGGATGAGAGACGGAGAACGAAATACGATTGAGCCAAAACTAGCAAA</left_flank>
        <right_flank>AAGAAATGAAAATTTCTATGACTTTGTTTTGACGGAATTCCTCTCTTTTC</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCACATGACTCGTTTACTGCCGATCCCATTTGTCTGAAATTTCTGAATGTTGTTTTGCATTCTTGCTGAGTTAAGCCATCAAAAAGGTTTCAATCTTCGGAAAACAGACGAAAGATATGGGAAAAGTTCTTCATATGGGAAAAAACAATTCTCGATTCAGAGAACCTAGAACTTCTTTCATGCAATAAAATAGATAATGAACAACGGGAAAAAAGTCAGCAGTATACACATAAAACAGGGGTAATTATTGAAATTTCAGATGAAATGTGAAAACTATCTCTTTCCTCATTTTTCTTTTAATTCTTTCGGCATCCGTCATGTCACTCTAGGGTTTGTGCATCTAGGGTTTGGATATCAAAGTTTTGAAATGTGAAGAGGTCTCAAAGTTTTATTACTTGAAATTCAGGGTGAGTATGGAGGAGATAAAGATGAAAGTGAAAAAATTGGTAGTGGATGAGAGACGGAGAACGAAATACGATTGAGCCAAAACTAGCAAACAAGAAATGAAAATTTCTATGACTTTGTTTTGACGGAATTCCTCTCTTTTCCAACTGCCACTTATTTTATCTCATCCCTTTTCTCCCTAAGATGCCCATTTTTCTTGGGATATCCATAAACATGGGGTTCGGTATCAACACTGAAAAAGAATAGAACATTAGCGCCAGATAATTCAAGTAAAATGAAACAAAAACAAAATTACACATGTTAATATTTGATAAACCCAGAATGTGTTTTATTTGAGAGAGTCTACCGTAACTAGGTATCCGGTTCACACCTTCTGGTTCGGAACTTAGAAGATTACAAAATATAAAATTATATATATTTGAAATCGCAAATTGAAACAGAAAAATGTATTTTTTTTGCGAAAAGATTCATGTAAATATGGTTTATAAGCATAATTGTCAAACAACTTAATGATTCATAAATTGCAAGTAAAAGACTGAAATAGGCATGCTACAAAGGCATTCTGTCAAAAACAGTAACATTGACCAATAAAC</canonical>
            <polymorphic>TGTCACATGACTCGTTTACTGCCGATCCCATTTGTCTGAAATTTCTGAATGTTGTTTTGCATTCTTGCTGAGTTAAGCCATCAAAAAGGTTTCAATCTTCGGAAAACAGACGAAAGATATGGGAAAAGTTCTTCATATGGGAAAAAACAATTCTCGATTCAGAGAACCTAGAACTTCTTTCATGCAATAAAATAGATAATGAACAACGGGAAAAAAGTCAGCAGTATACACATAAAACAGGGGTAATTATTGAAATTTCAGATGAAATGTGAAAACTATCTCTTTCCTCATTTTTCTTTTAATTCTTTCGGCATCCGTCATGTCACTCTAGGGTTTGTGCATCTAGGGTTTGGATATCAAAGTTTTGAAATGTGAAGAGGTCTCAAAGTTTTATTACTTGAAATTCAGGGTGAGTATGGAGGAGATAAAGATGAAAGTGAAAAAATTGGTAGTGGATGAGAGACGGAGAACGAAATACGATTGAGCCAAAACTAGCAAAMAAGAAATGAAAATTTCTATGACTTTGTTTTGACGGAATTCCTCTCTTTTCCAACTGCCACTTATTTTATCTCATCCCTTTTCTCCCTAAGATGCCCATTTTTCTTGGGATATCCATAAACATGGGGTTCGGTATCAACACTGAAAAAGAATAGAACATTAGCGCCAGATAATTCAAGTAAAATGAAACAAAAACAAAATTACACATGTTAATATTTGATAAACCCAGAATGTGTTTTATTTGAGAGAGTCTACCGTAACTAGGTATCCGGTTCACACCTTCTGGTTCGGAACTTAGAAGATTACAAAATATAAAATTATATATATTTGAAATCGCAAATTGAAACAGAAAAATGTATTTTTTTTGCGAAAAGATTCATGTAAATATGGTTTATAAGCATAATTGTCAAACAACTTAATGATTCATAAATTGCAAGTAAAAGACTGAAATAGGCATGCTACAAAGGCATTCTGTCAAAAACAGTAACATTGACCAATAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGTATGGAGGAGATAAAGATG</pcr_primer_p1>
		<pcr_primer_p2>CGCTAATGTTCTATTCTTTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TGAGTATGGAGGAGATAAAGATGAAAGTGAAAAAATTGGTAGTGGATGAGAGACGGAGAACGAAATACGATTGAGCCAAAACTAGCAAACAAGAAATGAAAATTTCTATGACTTTGTTTTGACGGAATTCCTCTCTTTTCCAACTGCCACTTATTTTATCTCATCCCTTTTCTCCCTAAGATGCCCATTTTTCTTGGGATATCCATAAACATGGGGTTCGGTATCAACACTGAAAAAGAATAGAACATTAGCG</canonical_amplicon>
		<polymorphic_amplicon>TGAGTATGGAGGAGATAAAGATGAAAGTGAAAAAATTGGTAGTGGATGAGAGACGGAGAACGAAATACGATTGAGCCAAAACTAGCAAAMAAGAAATGAAAATTTCTATGACTTTGTTTTGACGGAATTCCTCTCTTTTCCAACTGCCACTTATTTTATCTCATCCCTTTTCTCCCTAAGATGCCCATTTTTCTTGGGATATCCATAAACATGGGGTTCGGTATCAACACTGAAAAAGAATAGAACATTAGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11973</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>18052</contig_pos>
        <strand>+</strand>
        <context>TTAATCGAAA[G/T]TAAGCTGGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCGAATTATATTCACATTGAAAATCTAGGAGCATGCACAGTTAATCGAAA</left_flank>
        <right_flank>TAAGCTGGTTATTTTTCAGGTGTTAATCTGTTTTAAATTTTTTTTGATGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAAAAAAAAACACAAAACCAGAAATAAAAATAGTTGGTTATTGGAATGAGACAAAAAACAGCAGCTGCTTGAGAAGTCATTCTTTTTTTAGATTTCTTGCATATTTCGTGGTTCTAGTTTTTTTTCGTATGTTTTTTCAATGACTTGTTGCTATTTTTGGTACTGAGCCAAAATTTGTATTAAACCGAAATTGAAATTAAAATTTCAAAAAGCTAACTTAATAGTGATTTATCAGAAACATTTTTTTCTGATAAGCTTTTATATGACTTTCCAAATACAGGGTATTTTTCAACACTCACATTGCTGACTTCATGGGAAAACCTACAAAATATCCTTGATTTTTTTTTTCCCGCTTACAGCAAAATGGAAATAAAAAGACATATGGAAAATAGTTATTTCAAAAGAACGAGGAAAATTATAATTTGAAATCGGTATTAAAATATTTTTGCGAATTATATTCACATTGAAAATCTAGGAGCATGCACAGTTAATCGAAATTAAGCTGGTTATTTTTCAGGTGTTAATCTGTTTTAAATTTTTTTTGATGCCGTTCCAGTGAGAAATTATCGAACTTTGAATGCAAAAAGTAACATGGAAAACAACTTCGGAAGTAGTGTCATGAGATGTACGTAAATGCAGCAAAAAAACGAACGAGTAATGTAAAAAAGAAGAAAAACACTTATGCGGCTAGTAAAAACAGGAAATCGGATCTCCTCGGTTAGGTGTGTTATCAAAAAAACTGTTTTTTCCTATAACCGCAAGATGCAAATTAGACCTCCAGTAATTTATGTTAGCTGAATTATTGGGAGAACTCTACGAATGAATTCATATTAAACCGTATAAAATGATCCATTACTATTGCTTCTGATTTTTGAGTCTAATGTAAGCATAAACGTTTTCTCACAATGAGAATATCTCAGTATTAAAATAATCCAATCTTCTAAGTATGAGCTTTAATAGATATTGTTCATCACTAAAAAAAGGATTGTCCTGAAGCT</canonical>
            <polymorphic>AAGAAAAAAAAACACAAAACCAGAAATAAAAATAGTTGGTTATTGGAATGAGACAAAAAACAGCAGCTGCTTGAGAAGTCATTCTTTTTTTAGATTTCTTGCATATTTCGTGGTTCTAGTTTTTTTTCGTATGTTTTTTCAATGACTTGTTGCTATTTTTGGTACTGAGCCAAAATTTGTATTAAACCGAAATTGAAATTAAAATTTCAAAAAGCTAACTTAATAGTGATTTATCAGAAACATTTTTTTCTGATAAGCTTTTATATGACTTTCCAAATACAGGGTATTTTTCAACACTCACATTGCTGACTTCATGGGAAAACCTACAAAATATCCTTGATTTTTTTTTTCCCGCTTACAGCAAAATGGAAATAAAAAGACATATGGAAAATAGTTATTTCAAAAGAACGAGGAAAATTATAATTTGAAATCGGTATTAAAATATTTTTGCGAATTATATTCACATTGAAAATCTAGGAGCATGCACAGTTAATCGAAAKTAAGCTGGTTATTTTTCAGGTGTTAATCTGTTTTAAATTTTTTTTGATGCCGTTCCAGTGAGAAATTATCGAACTTTGAATGCAAAAAGTAACATGGAAAACAACTTCGGAAGTAGTGTCATGAGATGTACGTAAATGCAGCAAAAAAACGAACGAGTAATGTAAAAAAGAAGAAAAACACTTATGCGGCTAGTAAAAACAGGAAATCGGATCTCCTCGGTTAGGTGTGTTATCAAAAAAACTGTTTTTTCCTATAACCGCAAGATGCAAATTAGACCTCCAGTAATTTATGTTAGCTGAATTATTGGGAGAACTCTACGAATGAATTCATATTAAACCGTATAAAATGATCCATTACTATTGCTTCTGATTTTTGAGTCTAATGTAAGCATAAACGTTTTCTCACAATGAGAATATCTCAGTATTAAAATAATCCAATCTTCTAAGTATGAGCTTTAATAGATATTGTTCATCACTAAAAAAAGGATTGTCCTGAAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>300 217 182 92 53 44 31 23 21 17 10 10</canonical_bands>
                <polymorphic_bands>300 217 182 92 53 44 33 31 21 17 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>213 206 176 173 45 38 31 28 25 17 15 15 6 6 6</canonical_bands>
                <polymorphic_bands>213 206 176 173 83 31 28 25 17 15 15 6 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGCGAATTATATTCACATTG</pcr_primer_p1>
		<pcr_primer_p2>TTACTAGCCGCATAAGTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGCGAATTATATTCACATTGAAAATCTAGGAGCATGCACAGTTAATCGAAATTAAGCTGGTTATTTTTCAGGTGTTAATCTGTTTTAAATTTTTTTTGATGCCGTTCCAGTGAGAAATTATCGAACTTTGAATGCAAAAAGTAACATGGAAAACAACTTCGGAAGTAGTGTCATGAGATGTACGTAAATGCAGCAAAAAAACGAACGAGTAATGTAAAAAAGAAGAAAAACACTTATGCGGCTAGTAA</canonical_amplicon>
		<polymorphic_amplicon>TTTGCGAATTATATTCACATTGAAAATCTAGGAGCATGCACAGTTAATCGAAAKTAAGCTGGTTATTTTTCAGGTGTTAATCTGTTTTAAATTTTTTTTGATGCCGTTCCAGTGAGAAATTATCGAACTTTGAATGCAAAAAGTAACATGGAAAACAACTTCGGAAGTAGTGTCATGAGATGTACGTAAATGCAGCAAAAAAACGAACGAGTAATGTAAAAAAGAAGAAAAACACTTATGCGGCTAGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11974</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>17961</contig_pos>
        <strand>+</strand>
        <context>TTCAAAAGAA[C/T]GAGGAAAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGCAAAATGGAAATAAAAAGACATATGGAAAATAGTTATTTCAAAAGAA</left_flank>
        <right_flank>GAGGAAAATTATAATTTGAAATCGGTATTAAAATATTTTTGCGAATTATA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCACAATCATCGGAATCTAGAAATAAATTGAAAAATAACGTTAGAAGTTTCAATGTTTTAGAAAAGGTTTCTTAATAACTTCAACAAAAAGAAAAAAAAACACAAAACCAGAAATAAAAATAGTTGGTTATTGGAATGAGACAAAAAACAGCAGCTGCTTGAGAAGTCATTCTTTTTTTAGATTTCTTGCATATTTCGTGGTTCTAGTTTTTTTTCGTATGTTTTTTCAATGACTTGTTGCTATTTTTGGTACTGAGCCAAAATTTGTATTAAACCGAAATTGAAATTAAAATTTCAAAAAGCTAACTTAATAGTGATTTATCAGAAACATTTTTTTCTGATAAGCTTTTATATGACTTTCCAAATACAGGGTATTTTTCAACACTCACATTGCTGACTTCATGGGAAAACCTACAAAATATCCTTGATTTTTTTTTTCCCGCTTACAGCAAAATGGAAATAAAAAGACATATGGAAAATAGTTATTTCAAAAGAACGAGGAAAATTATAATTTGAAATCGGTATTAAAATATTTTTGCGAATTATATTCACATTGAAAATCTAGGAGCATGCACAGTTAATCGAAATTAAGCTGGTTATTTTTCAGGTGTTAATCTGTTTTAAATTTTTTTTGATGCCGTTCCAGTGAGAAATTATCGAACTTTGAATGCAAAAAGTAACATGGAAAACAACTTCGGAAGTAGTGTCATGAGATGTACGTAAATGCAGCAAAAAAACGAACGAGTAATGTAAAAAAGAAGAAAAACACTTATGCGGCTAGTAAAAACAGGAAATCGGATCTCCTCGGTTAGGTGTGTTATCAAAAAAACTGTTTTTTCCTATAACCGCAAGATGCAAATTAGACCTCCAGTAATTTATGTTAGCTGAATTATTGGGAGAACTCTACGAATGAATTCATATTAAACCGTATAAAATGATCCATTACTATTGCTTCTGATTTTTGAGTCTAATGTAAGCATAAACGTTTTCTCACAAT</canonical>
            <polymorphic>AAATCACAATCATCGGAATCTAGAAATAAATTGAAAAATAACGTTAGAAGTTTCAATGTTTTAGAAAAGGTTTCTTAATAACTTCAACAAAAAGAAAAAAAAACACAAAACCAGAAATAAAAATAGTTGGTTATTGGAATGAGACAAAAAACAGCAGCTGCTTGAGAAGTCATTCTTTTTTTAGATTTCTTGCATATTTCGTGGTTCTAGTTTTTTTTCGTATGTTTTTTCAATGACTTGTTGCTATTTTTGGTACTGAGCCAAAATTTGTATTAAACCGAAATTGAAATTAAAATTTCAAAAAGCTAACTTAATAGTGATTTATCAGAAACATTTTTTTCTGATAAGCTTTTATATGACTTTCCAAATACAGGGTATTTTTCAACACTCACATTGCTGACTTCATGGGAAAACCTACAAAATATCCTTGATTTTTTTTTTCCCGCTTACAGCAAAATGGAAATAAAAAGACATATGGAAAATAGTTATTTCAAAAGAAYGAGGAAAATTATAATTTGAAATCGGTATTAAAATATTTTTGCGAATTATATTCACATTGAAAATCTAGGAGCATGCACAGTTAATCGAAATTAAGCTGGTTATTTTTCAGGTGTTAATCTGTTTTAAATTTTTTTTGATGCCGTTCCAGTGAGAAATTATCGAACTTTGAATGCAAAAAGTAACATGGAAAACAACTTCGGAAGTAGTGTCATGAGATGTACGTAAATGCAGCAAAAAAACGAACGAGTAATGTAAAAAAGAAGAAAAACACTTATGCGGCTAGTAAAAACAGGAAATCGGATCTCCTCGGTTAGGTGTGTTATCAAAAAAACTGTTTTTTCCTATAACCGCAAGATGCAAATTAGACCTCCAGTAATTTATGTTAGCTGAATTATTGGGAGAACTCTACGAATGAATTCATATTAAACCGTATAAAATGATCCATTACTATTGCTTCTGATTTTTGAGTCTAATGTAAGCATAAACGTTTTCTCACAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACACTCACATTGCTGACTTC</pcr_primer_p1>
		<pcr_primer_p2>AAAACAGATTAACACCTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AACACTCACATTGCTGACTTCATGGGAAAACCTACAAAATATCCTTGATTTTTTTTTTCCCGCTTACAGCAAAATGGAAATAAAAAGACATATGGAAAATAGTTATTTCAAAAGAACGAGGAAAATTATAATTTGAAATCGGTATTAAAATATTTTTGCGAATTATATTCACATTGAAAATCTAGGAGCATGCACAGTTAATCGAAATTAAGCTGGTTATTTTTCAGGTGTTAATCTGTTTT</canonical_amplicon>
		<polymorphic_amplicon>AACACTCACATTGCTGACTTCATGGGAAAACCTACAAAATATCCTTGATTTTTTTTTTCCCGCTTACAGCAAAATGGAAATAAAAAGACATATGGAAAATAGTTATTTCAAAAGAAYGAGGAAAATTATAATTTGAAATCGGTATTAAAATATTTTTGCGAATTATATTCACATTGAAAATCTAGGAGCATGCACAGTTAATCGAAATTAAGCTGGTTATTTTTCAGGTGTTAATCTGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11975</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>17920</contig_pos>
        <strand></strand>
        <context>ACAGCAAAAT[G/C]GAAATAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GAAAACCTACAAAATATCCTTGATTTTTTTTTTCCCGCTTACAGCAAAAT</left_flank>
        <right_flank>GAAATAAAAAGACATATGGAAAATAGTTATTTCAAAAGAACGAGGAAAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTTCCCTGGTAATCTCCTTGGAAAAAGTTGATAAATTTTGAAATCACAATCATCGGAATCTAGAAATAAATTGAAAAATAACGTTAGAAGTTTCAATGTTTTAGAAAAGGTTTCTTAATAACTTCAACAAAAAGAAAAAAAAACACAAAACCAGAAATAAAAATAGTTGGTTATTGGAATGAGACAAAAAACAGCAGCTGCTTGAGAAGTCATTCTTTTTTTAGATTTCTTGCATATTTCGTGGTTCTAGTTTTTTTTCGTATGTTTTTTCAATGACTTGTTGCTATTTTTGGTACTGAGCCAAAATTTGTATTAAACCGAAATTGAAATTAAAATTTCAAAAAGCTAACTTAATAGTGATTTATCAGAAACATTTTTTTCTGATAAGCTTTTATATGACTTTCCAAATACAGGGTATTTTTCAACACTCACATTGCTGACTTCATGGGAAAACCTACAAAATATCCTTGATTTTTTTTTTCCCGCTTACAGCAAAATGGAAATAAAAAGACATATGGAAAATAGTTATTTCAAAAGAACGAGGAAAATTATAATTTGAAATCGGTATTAAAATATTTTTGCGAATTATATTCACATTGAAAATCTAGGAGCATGCACAGTTAATCGAAATTAAGCTGGTTATTTTTCAGGTGTTAATCTGTTTTAAATTTTTTTTGATGCCGTTCCAGTGAGAAATTATCGAACTTTGAATGCAAAAAGTAACATGGAAAACAACTTCGGAAGTAGTGTCATGAGATGTACGTAAATGCAGCAAAAAAACGAACGAGTAATGTAAAAAAGAAGAAAAACACTTATGCGGCTAGTAAAAACAGGAAATCGGATCTCCTCGGTTAGGTGTGTTATCAAAAAAACTGTTTTTTCCTATAACCGCAAGATGCAAATTAGACCTCCAGTAATTTATGTTAGCTGAATTATTGGGAGAACTCTACGAATGAATTCATATTAAACCGTATAAAATGATCCATTACTATTGCTTCT</canonical>
            <polymorphic>CGTTCCCTGGTAATCTCCTTGGAAAAAGTTGATAAATTTTGAAATCACAATCATCGGAATCTAGAAATAAATTGAAAAATAACGTTAGAAGTTTCAATGTTTTAGAAAAGGTTTCTTAATAACTTCAACAAAAAGAAAAAAAAACACAAAACCAGAAATAAAAATAGTTGGTTATTGGAATGAGACAAAAAACAGCAGCTGCTTGAGAAGTCATTCTTTTTTTAGATTTCTTGCATATTTCGTGGTTCTAGTTTTTTTTCGTATGTTTTTTCAATGACTTGTTGCTATTTTTGGTACTGAGCCAAAATTTGTATTAAACCGAAATTGAAATTAAAATTTCAAAAAGCTAACTTAATAGTGATTTATCAGAAACATTTTTTTCTGATAAGCTTTTATATGACTTTCCAAATACAGGGTATTTTTCAACACTCACATTGCTGACTTCATGGGAAAACCTACAAAATATCCTTGATTTTTTTTTTCCCGCTTACAGCAAAATSGAAATAAAAAGACATATGGAAAATAGTTATTTCAAAAGAACGAGGAAAATTATAATTTGAAATCGGTATTAAAATATTTTTGCGAATTATATTCACATTGAAAATCTAGGAGCATGCACAGTTAATCGAAATTAAGCTGGTTATTTTTCAGGTGTTAATCTGTTTTAAATTTTTTTTGATGCCGTTCCAGTGAGAAATTATCGAACTTTGAATGCAAAAAGTAACATGGAAAACAACTTCGGAAGTAGTGTCATGAGATGTACGTAAATGCAGCAAAAAAACGAACGAGTAATGTAAAAAAGAAGAAAAACACTTATGCGGCTAGTAAAAACAGGAAATCGGATCTCCTCGGTTAGGTGTGTTATCAAAAAAACTGTTTTTTCCTATAACCGCAAGATGCAAATTAGACCTCCAGTAATTTATGTTAGCTGAATTATTGGGAGAACTCTACGAATGAATTCATATTAAACCGTATAAAATGATCCATTACTATTGCTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACACTCACATTGCTGACTTC</pcr_primer_p1>
		<pcr_primer_p2>AAAACAGATTAACACCTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AACACTCACATTGCTGACTTCATGGGAAAACCTACAAAATATCCTTGATTTTTTTTTTCCCGCTTACAGCAAAATGGAAATAAAAAGACATATGGAAAATAGTTATTTCAAAAGAACGAGGAAAATTATAATTTGAAATCGGTATTAAAATATTTTTGCGAATTATATTCACATTGAAAATCTAGGAGCATGCACAGTTAATCGAAATTAAGCTGGTTATTTTTCAGGTGTTAATCTGTTTT</canonical_amplicon>
		<polymorphic_amplicon>AACACTCACATTGCTGACTTCATGGGAAAACCTACAAAATATCCTTGATTTTTTTTTTCCCGCTTACAGCAAAATSGAAATAAAAAGACATATGGAAAATAGTTATTTCAAAAGAACGAGGAAAATTATAATTTGAAATCGGTATTAAAATATTTTTGCGAATTATATTCACATTGAAAATCTAGGAGCATGCACAGTTAATCGAAATTAAGCTGGTTATTTTTCAGGTGTTAATCTGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11976</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>23221</contig_pos>
        <strand>+</strand>
        <context>TGCGATCGAC[C/T]GAGAATTGGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGTTATGTCTTTCATCTCTCTGAATATGACGGCTTTGTTTGCGATCGAC</left_flank>
        <right_flank>GAGAATTGGCTTTCATTCTTTTTTCTCTTAAATGAATAACTTCTTTTCAG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTCAAAAACTGGTGTCAATGTGGACATAATCATGCAAGATATTTTGGAAACAGTTTTCGAAAGACGTTTCGCAACAGAGGACGACGAAGAAATTTTCAGTGATCAACCTGTCAGTGAAAATGTTACTTTTTCGAGTGTCTTTTCAATTGGTATTTGTAGGTGTACGCAACCACAGTTCTGACAAGCAACAATGAAGAGCCAGCAATAGTAAATGGATTTTGCTGGATCCCATTAATTTCATATTTTCGTCGTAAAGAAACAAACTGATTTGGGAAGTCCATCACAGGAATTCCGAATAAAACGTTGGATAACGTCTATTAGAATCATTTATTAACCTAACTCTCCCATAAGACGTTTTCGTTGCTTTATATTTTAATTTTCTTTTTGCGATTGAGTGGTACCAAGACAGAAAAAGAAGGGTAACTTAATCCATTTGAGTGCATGAAAAAGTTATGTCTTTCATCTCTCTGAATATGACGGCTTTGTTTGCGATCGACTGAGAATTGGCTTTCATTCTTTTTTCTCTTAAATGAATAACTTCTTTTCAGTTTTCACAGCATTTTCTCTTGTCTGTAATTGATTACCTTTTTTTTGCTATAATTTCCGTTTTTTCCACTCCAAACTGTTCAAAGCGTTTTCAAAAATTGCAAGAATTCACACTTTTTCAATACCATTAACACGCCCTCCAGGAGCAGAGTTTTACTAAAAAATTACCTATTCTATCAACCAGAAAAATAAAGCAGAACAAAAAATCAAATCATTCAGCCAGAACGAATCTGAAAAAGTTACGTCGTCAACTTTTGAACAATACATCTGGTACCTACCAGACTTTTCCCGATGCTCATTAGGCTGGAAGTAATTTTTACATTGGGAATAAATTGTGATGAACATTATGGTAACTTGAATGGACTAGCTTTTACAACAATAGTTATCGACATCGGCTGGATTTGAAGTTGATTACGCTGGTTCTGAGTTTAAAACAAAAATTTTCAATGACA</canonical>
            <polymorphic>AGCTCAAAAACTGGTGTCAATGTGGACATAATCATGCAAGATATTTTGGAAACAGTTTTCGAAAGACGTTTCGCAACAGAGGACGACGAAGAAATTTTCAGTGATCAACCTGTCAGTGAAAATGTTACTTTTTCGAGTGTCTTTTCAATTGGTATTTGTAGGTGTACGCAACCACAGTTCTGACAAGCAACAATGAAGAGCCAGCAATAGTAAATGGATTTTGCTGGATCCCATTAATTTCATATTTTCGTCGTAAAGAAACAAACTGATTTGGGAAGTCCATCACAGGAATTCCGAATAAAACGTTGGATAACGTCTATTAGAATCATTTATTAACCTAACTCTCCCATAAGACGTTTTCGTTGCTTTATATTTTAATTTTCTTTTTGCGATTGAGTGGTACCAAGACAGAAAAAGAAGGGTAACTTAATCCATTTGAGTGCATGAAAAAGTTATGTCTTTCATCTCTCTGAATATGACGGCTTTGTTTGCGATCGACYGAGAATTGGCTTTCATTCTTTTTTCTCTTAAATGAATAACTTCTTTTCAGTTTTCACAGCATTTTCTCTTGTCTGTAATTGATTACCTTTTTTTTGCTATAATTTCCGTTTTTTCCACTCCAAACTGTTCAAAGCGTTTTCAAAAATTGCAAGAATTCACACTTTTTCAATACCATTAACACGCCCTCCAGGAGCAGAGTTTTACTAAAAAATTACCTATTCTATCAACCAGAAAAATAAAGCAGAACAAAAAATCAAATCATTCAGCCAGAACGAATCTGAAAAAGTTACGTCGTCAACTTTTGAACAATACATCTGGTACCTACCAGACTTTTCCCGATGCTCATTAGGCTGGAAGTAATTTTTACATTGGGAATAAATTGTGATGAACATTATGGTAACTTGAATGGACTAGCTTTTACAACAATAGTTATCGACATCGGCTGGATTTGAAGTTGATTACGCTGGTTCTGAGTTTAAAACAAAAATTTTCAATGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>499 472 29</canonical_bands>
                <polymorphic_bands>971 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTGAGTGCATGAAAAAGTTAT</pcr_primer_p1>
		<pcr_primer_p2>CGTGTTAATGGTATTGAAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTGAGTGCATGAAAAAGTTATGTCTTTCATCTCTCTGAATATGACGGCTTTGTTTGCGATCGACTGAGAATTGGCTTTCATTCTTTTTTCTCTTAAATGAATAACTTCTTTTCAGTTTTCACAGCATTTTCTCTTGTCTGTAATTGATTACCTTTTTTTTGCTATAATTTCCGTTTTTTCCACTCCAAACTGTTCAAAGCGTTTTCAAAAATTGCAAGAATTCACACTTTTTCAATACCATTAACACG</canonical_amplicon>
		<polymorphic_amplicon>ATTTGAGTGCATGAAAAAGTTATGTCTTTCATCTCTCTGAATATGACGGCTTTGTTTGCGATCGACYGAGAATTGGCTTTCATTCTTTTTTCTCTTAAATGAATAACTTCTTTTCAGTTTTCACAGCATTTTCTCTTGTCTGTAATTGATTACCTTTTTTTTGCTATAATTTCCGTTTTTTCCACTCCAAACTGTTCAAAGCGTTTTCAAAAATTGCAAGAATTCACACTTTTTCAATACCATTAACACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11977</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>23256</contig_pos>
        <strand>+</strand>
        <context>CTCTTAAATG[A/G]ATAACTTCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGTTTGCGATCGACTGAGAATTGGCTTTCATTCTTTTTTCTCTTAAATG</left_flank>
        <right_flank>ATAACTTCTTTTCAGTTTTCACAGCATTTTCTCTTGTCTGTAATTGATTA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAAGATATTTTGGAAACAGTTTTCGAAAGACGTTTCGCAACAGAGGACGACGAAGAAATTTTCAGTGATCAACCTGTCAGTGAAAATGTTACTTTTTCGAGTGTCTTTTCAATTGGTATTTGTAGGTGTACGCAACCACAGTTCTGACAAGCAACAATGAAGAGCCAGCAATAGTAAATGGATTTTGCTGGATCCCATTAATTTCATATTTTCGTCGTAAAGAAACAAACTGATTTGGGAAGTCCATCACAGGAATTCCGAATAAAACGTTGGATAACGTCTATTAGAATCATTTATTAACCTAACTCTCCCATAAGACGTTTTCGTTGCTTTATATTTTAATTTTCTTTTTGCGATTGAGTGGTACCAAGACAGAAAAAGAAGGGTAACTTAATCCATTTGAGTGCATGAAAAAGTTATGTCTTTCATCTCTCTGAATATGACGGCTTTGTTTGCGATCGACTGAGAATTGGCTTTCATTCTTTTTTCTCTTAAATGAATAACTTCTTTTCAGTTTTCACAGCATTTTCTCTTGTCTGTAATTGATTACCTTTTTTTTGCTATAATTTCCGTTTTTTCCACTCCAAACTGTTCAAAGCGTTTTCAAAAATTGCAAGAATTCACACTTTTTCAATACCATTAACACGCCCTCCAGGAGCAGAGTTTTACTAAAAAATTACCTATTCTATCAACCAGAAAAATAAAGCAGAACAAAAAATCAAATCATTCAGCCAGAACGAATCTGAAAAAGTTACGTCGTCAACTTTTGAACAATACATCTGGTACCTACCAGACTTTTCCCGATGCTCATTAGGCTGGAAGTAATTTTTACATTGGGAATAAATTGTGATGAACATTATGGTAACTTGAATGGACTAGCTTTTACAACAATAGTTATCGACATCGGCTGGATTTGAAGTTGATTACGCTGGTTCTGAGTTTAAAACAAAAATTTTCAATGACAAACCTATGAGAACCACGCATAATTTTTAAGAGGAG</canonical>
            <polymorphic>GCAAGATATTTTGGAAACAGTTTTCGAAAGACGTTTCGCAACAGAGGACGACGAAGAAATTTTCAGTGATCAACCTGTCAGTGAAAATGTTACTTTTTCGAGTGTCTTTTCAATTGGTATTTGTAGGTGTACGCAACCACAGTTCTGACAAGCAACAATGAAGAGCCAGCAATAGTAAATGGATTTTGCTGGATCCCATTAATTTCATATTTTCGTCGTAAAGAAACAAACTGATTTGGGAAGTCCATCACAGGAATTCCGAATAAAACGTTGGATAACGTCTATTAGAATCATTTATTAACCTAACTCTCCCATAAGACGTTTTCGTTGCTTTATATTTTAATTTTCTTTTTGCGATTGAGTGGTACCAAGACAGAAAAAGAAGGGTAACTTAATCCATTTGAGTGCATGAAAAAGTTATGTCTTTCATCTCTCTGAATATGACGGCTTTGTTTGCGATCGACTGAGAATTGGCTTTCATTCTTTTTTCTCTTAAATGRATAACTTCTTTTCAGTTTTCACAGCATTTTCTCTTGTCTGTAATTGATTACCTTTTTTTTGCTATAATTTCCGTTTTTTCCACTCCAAACTGTTCAAAGCGTTTTCAAAAATTGCAAGAATTCACACTTTTTCAATACCATTAACACGCCCTCCAGGAGCAGAGTTTTACTAAAAAATTACCTATTCTATCAACCAGAAAAATAAAGCAGAACAAAAAATCAAATCATTCAGCCAGAACGAATCTGAAAAAGTTACGTCGTCAACTTTTGAACAATACATCTGGTACCTACCAGACTTTTCCCGATGCTCATTAGGCTGGAAGTAATTTTTACATTGGGAATAAATTGTGATGAACATTATGGTAACTTGAATGGACTAGCTTTTACAACAATAGTTATCGACATCGGCTGGATTTGAAGTTGATTACGCTGGTTCTGAGTTTAAAACAAAAATTTTCAATGACAAACCTATGAGAACCACGCATAATTTTTAAGAGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTGAGTGCATGAAAAAGTTAT</pcr_primer_p1>
		<pcr_primer_p2>CGTGTTAATGGTATTGAAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTGAGTGCATGAAAAAGTTATGTCTTTCATCTCTCTGAATATGACGGCTTTGTTTGCGATCGACTGAGAATTGGCTTTCATTCTTTTTTCTCTTAAATGAATAACTTCTTTTCAGTTTTCACAGCATTTTCTCTTGTCTGTAATTGATTACCTTTTTTTTGCTATAATTTCCGTTTTTTCCACTCCAAACTGTTCAAAGCGTTTTCAAAAATTGCAAGAATTCACACTTTTTCAATACCATTAACACG</canonical_amplicon>
		<polymorphic_amplicon>ATTTGAGTGCATGAAAAAGTTATGTCTTTCATCTCTCTGAATATGACGGCTTTGTTTGCGATCGACTGAGAATTGGCTTTCATTCTTTTTTCTCTTAAATGRATAACTTCTTTTCAGTTTTCACAGCATTTTCTCTTGTCTGTAATTGATTACCTTTTTTTTGCTATAATTTCCGTTTTTTCCACTCCAAACTGTTCAAAGCGTTTTCAAAAATTGCAAGAATTCACACTTTTTCAATACCATTAACACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb11978</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>25333</contig_pos>
        <strand>+</strand>
        <context>CTTGTATATA[C/T]CTTTTGTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCTTACTCGACGCATCCTAATGAGCTTAAGCACACGTTCTTGTATATA</left_flank>
        <right_flank>CTTTTGTCAAGCTTTTCTCTATTTATTCTTATATTATTTGAATTAGAACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATAATTGAAAAGTTACTCAAATGAATACTTCACTATTCCATATTCCCGAATAATATGTATGTTATTTCAGGTGATTTGCGTTTCAAAATTGTACAATCTTTGTTGATTTTGTATTATTCAACTTCTGCTATTCTAAATTGTTCAGCCGGTGTCTTTGGAAACCTTTCAGACAACTAGCATTTTTTGTCGGATATTTATGAATTTTTCCCGCCTATTATTTATGAATTCGTTCTGTTTGTCCTACTCACTCATCGGGAGGAGAACGAGAACTGACTGTTTTTGAACATAAAGTCAATGGAAGTTCCTTTATTGCGTTTGAAAAATTCAATTAAAAGTCTCTGACAAGTTATTTTTGTGATTATTCACTGTAATACTCTTGTTTTATGTCGGTTGAAAAAGTGTAATGAGAAATCTAAGAAAAGAAATGACGACCACTCAAGGATCCGATTTCTTACTCGACGCATCCTAATGAGCTTAAGCACACGTTCTTGTATATATCTTTTGTCAAGCTTTTCTCTATTTATTCTTATATTATTTGAATTAGAACAGTTCTTAATTCTAAGTAAAAGTTGTGACTGAATTGCCTTCTGCTCATCAGTATTGTTTTATTATCTTATTAGATGAACTTGAAACGTTTTACAGTTATGAATTTTTTCTGTAATGGAACTGCAGAAAATTGATAAGATTTCGAAACGGCGATCAAAGAAACATCAACTTCAGAGAAAATATTGATTATAATATCAGTGATCGATCTTTATATATTTTTAGTTGTAGTACTATCCTAACAGGTATCTATGAATTATCATAAAATCCAATGAATCTATAAACACAATAAAACTCAATATGTAATTATAAATTGGTGTGATGTCCGGAAACAATCAAAGTATACGCTCATCCGTGTCGATTTTTCAATCTGATAAAAAGCATTCACACATTCGTGGCTTTTGGTTCATTCGATGGAAGCTTTTCCACTATTTTTCATTAAATACCATAACACA</canonical>
            <polymorphic>TAATAATTGAAAAGTTACTCAAATGAATACTTCACTATTCCATATTCCCGAATAATATGTATGTTATTTCAGGTGATTTGCGTTTCAAAATTGTACAATCTTTGTTGATTTTGTATTATTCAACTTCTGCTATTCTAAATTGTTCAGCCGGTGTCTTTGGAAACCTTTCAGACAACTAGCATTTTTTGTCGGATATTTATGAATTTTTCCCGCCTATTATTTATGAATTCGTTCTGTTTGTCCTACTCACTCATCGGGAGGAGAACGAGAACTGACTGTTTTTGAACATAAAGTCAATGGAAGTTCCTTTATTGCGTTTGAAAAATTCAATTAAAAGTCTCTGACAAGTTATTTTTGTGATTATTCACTGTAATACTCTTGTTTTATGTCGGTTGAAAAAGTGTAATGAGAAATCTAAGAAAAGAAATGACGACCACTCAAGGATCCGATTTCTTACTCGACGCATCCTAATGAGCTTAAGCACACGTTCTTGTATATAYCTTTTGTCAAGCTTTTCTCTATTTATTCTTATATTATTTGAATTAGAACAGTTCTTAATTCTAAGTAAAAGTTGTGACTGAATTGCCTTCTGCTCATCAGTATTGTTTTATTATCTTATTAGATGAACTTGAAACGTTTTACAGTTATGAATTTTTTCTGTAATGGAACTGCAGAAAATTGATAAGATTTCGAAACGGCGATCAAAGAAACATCAACTTCAGAGAAAATATTGATTATAATATCAGTGATCGATCTTTATATATTTTTAGTTGTAGTACTATCCTAACAGGTATCTATGAATTATCATAAAATCCAATGAATCTATAAACACAATAAAACTCAATATGTAATTATAAATTGGTGTGATGTCCGGAAACAATCAAAGTATACGCTCATCCGTGTCGATTTTTCAATCTGATAAAAAGCATTCACACATTCGTGGCTTTTGGTTCATTCGATGGAAGCTTTTCCACTATTTTTCATTAAATACCATAACACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTGAAAAAGTGTAATGAGAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAACGTTTCAAGTTCATCTAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTTGAAAAAGTGTAATGAGAAATCTAAGAAAAGAAATGACGACCACTCAAGGATCCGATTTCTTACTCGACGCATCCTAATGAGCTTAAGCACACGTTCTTGTATATATCTTTTGTCAAGCTTTTCTCTATTTATTCTTATATTATTTGAATTAGAACAGTTCTTAATTCTAAGTAAAAGTTGTGACTGAATTGCCTTCTGCTCATCAGTATTGTTTTATTATCTTATTAGATGAACTTGAAACGTTTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTGAAAAAGTGTAATGAGAAATCTAAGAAAAGAAATGACGACCACTCAAGGATCCGATTTCTTACTCGACGCATCCTAATGAGCTTAAGCACACGTTCTTGTATATAYCTTTTGTCAAGCTTTTCTCTATTTATTCTTATATTATTTGAATTAGAACAGTTCTTAATTCTAAGTAAAAGTTGTGACTGAATTGCCTTCTGCTCATCAGTATTGTTTTATTATCTTATTAGATGAACTTGAAACGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12021</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>298780</contig_pos>
        <strand></strand>
        <context>ATTGTACGGT[A/G]TACGTGTCGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCGCTACTCAAGCCTGAGAAAATGCCCTGTGGGCACGCTGATTGTACGGT</left_flank>
        <right_flank>TACGTGTCGCTTTTTTATGAACGCGTGATCAGTTTTCTACAACGTGATCA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCTTCTCTATCTATGTGTATCTCTCAATTGTCTATAGGATTTGTGCCACAAACGCACCAGCACCGTTTTGATTGTTTTATCATTTCATGCTATTTTCCTCGTTCTTTTCATTTTCTTCCCTCTTTTTCCCTTCTTGAATCCAATGCGTGTTACAAGTTTTTGTCATATGTCCTTGTAGTAGTGCTCGATCAAACATTTTTTTCTGTCGTCACCTTTTTACTCTTGCCAGACTTCGAAGACTTTTTTATTTTTGAGATATGTAAGTTGTTCAAGTCCGAGAGAGTATTTTAGTATAAAGTTTTATGTATAAGCAGAGGCAGGTCGTTAACATTCATGATAGCTTTCTTCAATACTTTACAACTGAAATTTTTTCCAACGAAACAGAAAAATGCAACTTTTTCTCACATGTGATTACTCAGCGCTCGTCATATTCTGCGTTTTTTTTTTTGCGCTACTCAAGCCTGAGAAAATGCCCTGTGGGCACGCTGATTGTACGGTATACGTGTCGCTTTTTTATGAACGCGTGATCAGTTTTCTACAACGTGATCAGTTTTCTACATATCCTCAGTGATCTTTTTCGAAATTGAGTCTTTAATTTTTTTTAAATTCTGATTTTTAGCGCCGTAAGCTTTCCTTAGTCATAAAATTTGTTTTCCATGCTGATCATAATTGGCTTAGCAGTTTGAGCGGTAGTTGGCGGAATCGCTCAGAAAAACGAGATGATCGATGCTTTTTTATGACCCTTCCAAACCGAAAAAGTGTTTTTTTTTCGAAACGATTCTCGAAAAATTAAGAACATCGAAAGGGGGAAAAGACTTCACAAAGACGCAATGAGACAGCTGGAAAAAAACAAAAAATTTCTATGTAAAGAAAAAAAGAACGAAGAAAAATTGCTTCTTCTTTTCACTCAAACTCATGAATTGGCACTCATAGTCACCCTCAACAGACTACACCCTTCATTCCTTTCGCATCTCAAAAAAAGCCTAGACAGAAGAAGGC</canonical>
            <polymorphic>GGCTTCTCTATCTATGTGTATCTCTCAATTGTCTATAGGATTTGTGCCACAAACGCACCAGCACCGTTTTGATTGTTTTATCATTTCATGCTATTTTCCTCGTTCTTTTCATTTTCTTCCCTCTTTTTCCCTTCTTGAATCCAATGCGTGTTACAAGTTTTTGTCATATGTCCTTGTAGTAGTGCTCGATCAAACATTTTTTTCTGTCGTCACCTTTTTACTCTTGCCAGACTTCGAAGACTTTTTTATTTTTGAGATATGTAAGTTGTTCAAGTCCGAGAGAGTATTTTAGTATAAAGTTTTATGTATAAGCAGAGGCAGGTCGTTAACATTCATGATAGCTTTCTTCAATACTTTACAACTGAAATTTTTTCCAACGAAACAGAAAAATGCAACTTTTTCTCACATGTGATTACTCAGCGCTCGTCATATTCTGCGTTTTTTTTTTTGCGCTACTCAAGCCTGAGAAAATGCCCTGTGGGCACGCTGATTGTACGGTRTACGTGTCGCTTTTTTATGAACGCGTGATCAGTTTTCTACAACGTGATCAGTTTTCTACATATCCTCAGTGATCTTTTTCGAAATTGAGTCTTTAATTTTTTTTAAATTCTGATTTTTAGCGCCGTAAGCTTTCCTTAGTCATAAAATTTGTTTTCCATGCTGATCATAATTGGCTTAGCAGTTTGAGCGGTAGTTGGCGGAATCGCTCAGAAAAACGAGATGATCGATGCTTTTTTATGACCCTTCCAAACCGAAAAAGTGTTTTTTTTTCGAAACGATTCTCGAAAAATTAAGAACATCGAAAGGGGGAAAAGACTTCACAAAGACGCAATGAGACAGCTGGAAAAAAACAAAAAATTTCTATGTAAAGAAAAAAAGAACGAAGAAAAATTGCTTCTTCTTTTCACTCAAACTCATGAATTGGCACTCATAGTCACCCTCAACAGACTACACCCTTCATTCCTTTCGCATCTCAAAAAAAGCCTAGACAGAAGAAGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTATAC</site>
                <isoschizomers>
                    <enzyme>BssNAI</enzyme>
                    <enzyme>Bst1107I</enzyme>
                    <enzyme>BstZ17I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTTCTTCAATACTTTACAACTG</pcr_primer_p1>
		<pcr_primer_p2>ACTCAATTTCGAAAAAGATCACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTTTCTTCAATACTTTACAACTGAAATTTTTTCCAACGAAACAGAAAAATGCAACTTTTTCTCACATGTGATTACTCAGCGCTCGTCATATTCTGCGTTTTTTTTTTTGCGCTACTCAAGCCTGAGAAAATGCCCTGTGGGCACGCTGATTGTACGGTATACGTGTCGCTTTTTTATGAACGCGTGATCAGTTTTCTACAACGTGATCAGTTTTCTACATATCCTCAGTGATCTTTTTCGAAATTGAGT</canonical_amplicon>
		<polymorphic_amplicon>GCTTTCTTCAATACTTTACAACTGAAATTTTTTCCAACGAAACAGAAAAATGCAACTTTTTCTCACATGTGATTACTCAGCGCTCGTCATATTCTGCGTTTTTTTTTTTGCGCTACTCAAGCCTGAGAAAATGCCCTGTGGGCACGCTGATTGTACGGTRTACGTGTCGCTTTTTTATGAACGCGTGATCAGTTTTCTACAACGTGATCAGTTTTCTACATATCCTCAGTGATCTTTTTCGAAATTGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12022</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>298768</contig_pos>
        <strand></strand>
        <context>GTGGGCACGC[T/A]GATTGTACGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GTTTTTTTTTTTGCGCTACTCAAGCCTGAGAAAATGCCCTGTGGGCACGC</left_flank>
        <right_flank>GATTGTACGGTATACGTGTCGCTTTTTTATGAACGCGTGATCAGTTTTCT</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCATTTTTTTCGGCTTCTCTATCTATGTGTATCTCTCAATTGTCTATAGGATTTGTGCCACAAACGCACCAGCACCGTTTTGATTGTTTTATCATTTCATGCTATTTTCCTCGTTCTTTTCATTTTCTTCCCTCTTTTTCCCTTCTTGAATCCAATGCGTGTTACAAGTTTTTGTCATATGTCCTTGTAGTAGTGCTCGATCAAACATTTTTTTCTGTCGTCACCTTTTTACTCTTGCCAGACTTCGAAGACTTTTTTATTTTTGAGATATGTAAGTTGTTCAAGTCCGAGAGAGTATTTTAGTATAAAGTTTTATGTATAAGCAGAGGCAGGTCGTTAACATTCATGATAGCTTTCTTCAATACTTTACAACTGAAATTTTTTCCAACGAAACAGAAAAATGCAACTTTTTCTCACATGTGATTACTCAGCGCTCGTCATATTCTGCGTTTTTTTTTTTGCGCTACTCAAGCCTGAGAAAATGCCCTGTGGGCACGCTGATTGTACGGTATACGTGTCGCTTTTTTATGAACGCGTGATCAGTTTTCTACAACGTGATCAGTTTTCTACATATCCTCAGTGATCTTTTTCGAAATTGAGTCTTTAATTTTTTTTAAATTCTGATTTTTAGCGCCGTAAGCTTTCCTTAGTCATAAAATTTGTTTTCCATGCTGATCATAATTGGCTTAGCAGTTTGAGCGGTAGTTGGCGGAATCGCTCAGAAAAACGAGATGATCGATGCTTTTTTATGACCCTTCCAAACCGAAAAAGTGTTTTTTTTTCGAAACGATTCTCGAAAAATTAAGAACATCGAAAGGGGGAAAAGACTTCACAAAGACGCAATGAGACAGCTGGAAAAAAACAAAAAATTTCTATGTAAAGAAAAAAAGAACGAAGAAAAATTGCTTCTTCTTTTCACTCAAACTCATGAATTGGCACTCATAGTCACCCTCAACAGACTACACCCTTCATTCCTTTCGCATCTCAAAAAAAGCCTAG</canonical>
            <polymorphic>TTCATTTTTTTCGGCTTCTCTATCTATGTGTATCTCTCAATTGTCTATAGGATTTGTGCCACAAACGCACCAGCACCGTTTTGATTGTTTTATCATTTCATGCTATTTTCCTCGTTCTTTTCATTTTCTTCCCTCTTTTTCCCTTCTTGAATCCAATGCGTGTTACAAGTTTTTGTCATATGTCCTTGTAGTAGTGCTCGATCAAACATTTTTTTCTGTCGTCACCTTTTTACTCTTGCCAGACTTCGAAGACTTTTTTATTTTTGAGATATGTAAGTTGTTCAAGTCCGAGAGAGTATTTTAGTATAAAGTTTTATGTATAAGCAGAGGCAGGTCGTTAACATTCATGATAGCTTTCTTCAATACTTTACAACTGAAATTTTTTCCAACGAAACAGAAAAATGCAACTTTTTCTCACATGTGATTACTCAGCGCTCGTCATATTCTGCGTTTTTTTTTTTGCGCTACTCAAGCCTGAGAAAATGCCCTGTGGGCACGCWGATTGTACGGTATACGTGTCGCTTTTTTATGAACGCGTGATCAGTTTTCTACAACGTGATCAGTTTTCTACATATCCTCAGTGATCTTTTTCGAAATTGAGTCTTTAATTTTTTTTAAATTCTGATTTTTAGCGCCGTAAGCTTTCCTTAGTCATAAAATTTGTTTTCCATGCTGATCATAATTGGCTTAGCAGTTTGAGCGGTAGTTGGCGGAATCGCTCAGAAAAACGAGATGATCGATGCTTTTTTATGACCCTTCCAAACCGAAAAAGTGTTTTTTTTTCGAAACGATTCTCGAAAAATTAAGAACATCGAAAGGGGGAAAAGACTTCACAAAGACGCAATGAGACAGCTGGAAAAAAACAAAAAATTTCTATGTAAAGAAAAAAAGAACGAAGAAAAATTGCTTCTTCTTTTCACTCAAACTCATGAATTGGCACTCATAGTCACCCTCAACAGACTACACCCTTCATTCCTTTCGCATCTCAAAAAAAGCCTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTTCTTCAATACTTTACAACTG</pcr_primer_p1>
		<pcr_primer_p2>ACTCAATTTCGAAAAAGATCACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTTTCTTCAATACTTTACAACTGAAATTTTTTCCAACGAAACAGAAAAATGCAACTTTTTCTCACATGTGATTACTCAGCGCTCGTCATATTCTGCGTTTTTTTTTTTGCGCTACTCAAGCCTGAGAAAATGCCCTGTGGGCACGCTGATTGTACGGTATACGTGTCGCTTTTTTATGAACGCGTGATCAGTTTTCTACAACGTGATCAGTTTTCTACATATCCTCAGTGATCTTTTTCGAAATTGAGT</canonical_amplicon>
		<polymorphic_amplicon>GCTTTCTTCAATACTTTACAACTGAAATTTTTTCCAACGAAACAGAAAAATGCAACTTTTTCTCACATGTGATTACTCAGCGCTCGTCATATTCTGCGTTTTTTTTTTTGCGCTACTCAAGCCTGAGAAAATGCCCTGTGGGCACGCWGATTGTACGGTATACGTGTCGCTTTTTTATGAACGCGTGATCAGTTTTCTACAACGTGATCAGTTTTCTACATATCCTCAGTGATCTTTTTCGAAATTGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12023</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>308779</contig_pos>
        <strand>+</strand>
        <context>TGCCAGGTTC[A/G]AATTACTAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAAGAGCACCTCACCTCTTCACTAAAAGAATGCCGCGCTTGCCAGGTTC</left_flank>
        <right_flank>AATTACTAATTGATAAACAGTGCGACAGGTGGTAGAAGCTTTGCAATCAT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGGTGACATGGCATACAATTTTTTCTTCAACTCGCTTGGTAACTGAGGACCGCAACACACAGGAAGAAAGGGCTAAGAAGTCTGAGAAGCCGCACTTTGATGGATCATGCTGGTAGCAGAACAGTGTGCGGGAGAGAGAAAAAAGAAGAATAAGACTCGATGTTTGCTTTAACCTTACTTTTTCACTTCTCAGACAAACTCCAATGACTTACCCGAAAGTTGAAAAATGTCAAGAGACAGATATCCGCCCGAAGCGCGAAATGACAGGTGGTAGCAGCTATACTAAACGGAAAGAGACAGAAGAAGGTGAATTTTGCAACTACATCGAAAAGTGCAAATGGTCACAAGATTAAAAAGGTCAATGGGTTTTTTCAAACTTTCAAAAAATTCTTCTAAAGATGTTCCCCACATTAAAGTGTTTATATTGGGCTAATTCCATTATGGCATCACAAGAGCACCTCACCTCTTCACTAAAAGAATGCCGCGCTTGCCAGGTTCGAATTACTAATTGATAAACAGTGCGACAGGTGGTAGAAGCTTTGCAATCATAAATTAAGTACCTCAAAAAACCACTCATAGGCTGGTTTTGGTTTTCCGACGGCACCACATTTGAGCTCGATCGTATGTCCCTCAATTCCGCGGTTTCCATTTGGCACATCAAATACCGTAATTGTGGGGCGCGCTGAAATATAATTAATGTGTGAGCTATAGTGCGAGGATGGGACATATGGAGAAGACTAAGAGTTATACGAAAAACGCATTGAAACGTTTCCCACACAAATCGCACGCGTACTCACCATAGCCAGTAACATTTACTGAAAGGGTTTCGAAGGATGAATATTGAGCAGCGTTGCAGTTATAAACTCCGTCGTCTTTTTTAGCAGTGAAGTGTGGGATGTAGAGAATCTGATTGTTCTCGGAGAATTCGTAGCCACGTTGGGAAGCTGAAAAGGTTACAAAAATAACTTGCTAAGACATATGTGGTATGTTGTCTTCATC</canonical>
            <polymorphic>AAGGTGACATGGCATACAATTTTTTCTTCAACTCGCTTGGTAACTGAGGACCGCAACACACAGGAAGAAAGGGCTAAGAAGTCTGAGAAGCCGCACTTTGATGGATCATGCTGGTAGCAGAACAGTGTGCGGGAGAGAGAAAAAAGAAGAATAAGACTCGATGTTTGCTTTAACCTTACTTTTTCACTTCTCAGACAAACTCCAATGACTTACCCGAAAGTTGAAAAATGTCAAGAGACAGATATCCGCCCGAAGCGCGAAATGACAGGTGGTAGCAGCTATACTAAACGGAAAGAGACAGAAGAAGGTGAATTTTGCAACTACATCGAAAAGTGCAAATGGTCACAAGATTAAAAAGGTCAATGGGTTTTTTCAAACTTTCAAAAAATTCTTCTAAAGATGTTCCCCACATTAAAGTGTTTATATTGGGCTAATTCCATTATGGCATCACAAGAGCACCTCACCTCTTCACTAAAAGAATGCCGCGCTTGCCAGGTTCRAATTACTAATTGATAAACAGTGCGACAGGTGGTAGAAGCTTTGCAATCATAAATTAAGTACCTCAAAAAACCACTCATAGGCTGGTTTTGGTTTTCCGACGGCACCACATTTGAGCTCGATCGTATGTCCCTCAATTCCGCGGTTTCCATTTGGCACATCAAATACCGTAATTGTGGGGCGCGCTGAAATATAATTAATGTGTGAGCTATAGTGCGAGGATGGGACATATGGAGAAGACTAAGAGTTATACGAAAAACGCATTGAAACGTTTCCCACACAAATCGCACGCGTACTCACCATAGCCAGTAACATTTACTGAAAGGGTTTCGAAGGATGAATATTGAGCAGCGTTGCAGTTATAAACTCCGTCGTCTTTTTTAGCAGTGAAGTGTGGGATGTAGAGAATCTGATTGTTCTCGGAGAATTCGTAGCCACGTTGGGAAGCTGAAAAGGTTACAAAAATAACTTGCTAAGACATATGTGGTATGTTGTCTTCATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>498 330 172</canonical_bands>
                <polymorphic_bands>828 172</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>211 172 171 168 159 119</canonical_bands>
                <polymorphic_bands>291 211 171 168 159</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGCAACTACATCGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>AATTTATGATTGCAAAGCTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGCAACTACATCGAAAAGTGCAAATGGTCACAAGATTAAAAAGGTCAATGGGTTTTTTCAAACTTTCAAAAAATTCTTCTAAAGATGTTCCCCACATTAAAGTGTTTATATTGGGCTAATTCCATTATGGCATCACAAGAGCACCTCACCTCTTCACTAAAAGAATGCCGCGCTTGCCAGGTTCGAATTACTAATTGATAAACAGTGCGACAGGTGGTAGAAGCTTTGCAATCATAAATT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGCAACTACATCGAAAAGTGCAAATGGTCACAAGATTAAAAAGGTCAATGGGTTTTTTCAAACTTTCAAAAAATTCTTCTAAAGATGTTCCCCACATTAAAGTGTTTATATTGGGCTAATTCCATTATGGCATCACAAGAGCACCTCACCTCTTCACTAAAAGAATGCCGCGCTTGCCAGGTTCRAATTACTAATTGATAAACAGTGCGACAGGTGGTAGAAGCTTTGCAATCATAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12024</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>311778</contig_pos>
        <strand>+</strand>
        <context>TGCAAGTAGT[A/G]CACAATCATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCGATTTACTGTGCTTTTCAAGATGTTGAAATCTTCAAATGCAAGTAGT</left_flank>
        <right_flank>CACAATCATGACGAATTCTCTCACACATACACTCTCAGCTGGCCAGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTACAGTTTTCTGATGTTAAGAAATGCCGCCGATGCGCCAGATTTGAATAACATGTATATTTGCGTCCTATTAGCAGTACTCTTTGTCTCAATGAGTTTGGATTAGTTGTGAAACATGTTCTTCGCCTCTTCATTCTTCACCCGAACTTGTTCATCTTCATTTTCTCCTATCTCTGTTTCTCCTTAAACGAGCCAATCATCAAAAGCGCTGGTCGCTGCCCGTCGTCTATTTTCGAGTGTGTGCCGTTTTGTTTGGTAAGTTGTGTGATCCACCCCGCGCTGCACTTTCTGTGAACACTTTTTGGCTGCTTCTGACTGCCTGCCTACCTCTCCTCTTTTCAACCTACTTATTTACCTATAGCTAATAAGCAACTTCTTATTGGAGAAAAAGAGAGAGGCGGTTTACTTAGTCGTCTTCTCTTTACTCCTGTTGTTTCATATACACAGGCACCGATTTACTGTGCTTTTCAAGATGTTGAAATCTTCAAATGCAAGTAGTACACAATCATGACGAATTCTCTCACACATACACTCTCAGCTGGCCAGAAAACAAAACGACTTGGACCGAATAACTTTGTTTCACGGAGCAGATTGAGCCAACACGAAAACGAGAGCAAAAAGCAGCTAGAGAAATGGGCGAAGGCGCACATAACATAGGAGAGATACATTCAAGGTTATTATGTAAATAAGTGTGTCGGCGCCAAAAGTCTGCGAGAAAGAAGGAGATTCCTTATATAACCATCAAATAAGAAACGAGCAATAAGAAATGGAAAATTTCTACTCGAGTTCACTAAAATGGGAAAGGGCAATCATGAAGAAAAATTTCTCGAGTTGTTTTTCAGGTCAGCAATCCCTCCAGGAAGAAAATAGCGTTTCTCTATTTATTCTATAAGTGGAATTCGCAGTGTGGAATTAGGAAGAAGATTGCCGAGATTATTTTCGAAAGTGGGTTTTGCAAACTAAAATAGGAATTTTTTCGTGACAATTCTACGGATGCAAA</canonical>
            <polymorphic>GTACAGTTTTCTGATGTTAAGAAATGCCGCCGATGCGCCAGATTTGAATAACATGTATATTTGCGTCCTATTAGCAGTACTCTTTGTCTCAATGAGTTTGGATTAGTTGTGAAACATGTTCTTCGCCTCTTCATTCTTCACCCGAACTTGTTCATCTTCATTTTCTCCTATCTCTGTTTCTCCTTAAACGAGCCAATCATCAAAAGCGCTGGTCGCTGCCCGTCGTCTATTTTCGAGTGTGTGCCGTTTTGTTTGGTAAGTTGTGTGATCCACCCCGCGCTGCACTTTCTGTGAACACTTTTTGGCTGCTTCTGACTGCCTGCCTACCTCTCCTCTTTTCAACCTACTTATTTACCTATAGCTAATAAGCAACTTCTTATTGGAGAAAAAGAGAGAGGCGGTTTACTTAGTCGTCTTCTCTTTACTCCTGTTGTTTCATATACACAGGCACCGATTTACTGTGCTTTTCAAGATGTTGAAATCTTCAAATGCAAGTAGTRCACAATCATGACGAATTCTCTCACACATACACTCTCAGCTGGCCAGAAAACAAAACGACTTGGACCGAATAACTTTGTTTCACGGAGCAGATTGAGCCAACACGAAAACGAGAGCAAAAAGCAGCTAGAGAAATGGGCGAAGGCGCACATAACATAGGAGAGATACATTCAAGGTTATTATGTAAATAAGTGTGTCGGCGCCAAAAGTCTGCGAGAAAGAAGGAGATTCCTTATATAACCATCAAATAAGAAACGAGCAATAAGAAATGGAAAATTTCTACTCGAGTTCACTAAAATGGGAAAGGGCAATCATGAAGAAAAATTTCTCGAGTTGTTTTTCAGGTCAGCAATCCCTCCAGGAAGAAAATAGCGTTTCTCTATTTATTCTATAAGTGGAATTCGCAGTGTGGAATTAGGAAGAAGATTGCCGAGATTATTTTCGAAAGTGGGTTTTGCAAACTAAAATAGGAATTTTTTCGTGACAATTCTACGGATGCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 421 76 2</canonical_bands>
                <polymorphic_bands>922 76 2</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>503 421 76</canonical_bands>
                <polymorphic_bands>924 76</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCCTCTTTTCAACCTACTTATT</pcr_primer_p1>
		<pcr_primer_p2>ACAAAGTTATTCGGTCCAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTCCTCTTTTCAACCTACTTATTTACCTATAGCTAATAAGCAACTTCTTATTGGAGAAAAAGAGAGAGGCGGTTTACTTAGTCGTCTTCTCTTTACTCCTGTTGTTTCATATACACAGGCACCGATTTACTGTGCTTTTCAAGATGTTGAAATCTTCAAATGCAAGTAGTACACAATCATGACGAATTCTCTCACACATACACTCTCAGCTGGCCAGAAAACAAAACGACTTGGACCGAATAACTTTGT</canonical_amplicon>
		<polymorphic_amplicon>TCTCCTCTTTTCAACCTACTTATTTACCTATAGCTAATAAGCAACTTCTTATTGGAGAAAAAGAGAGAGGCGGTTTACTTAGTCGTCTTCTCTTTACTCCTGTTGTTTCATATACACAGGCACCGATTTACTGTGCTTTTCAAGATGTTGAAATCTTCAAATGCAAGTAGTRCACAATCATGACGAATTCTCTCACACATACACTCTCAGCTGGCCAGAAAACAAAACGACTTGGACCGAATAACTTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12025</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>316958</contig_pos>
        <strand>+</strand>
        <context>GAAAATACTT[A/T]AGTAGaataa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGTCACACAAGTTTTTCACGTATAAAAATGCGATCTCAAGAAAATACTT</left_flank>
        <right_flank>AGTAGAATAATATTAATTATATAATTTGTACTAGTTTCTAAGTAATCCTG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATATTTAAAAATACGGAAGACGAGAAGCCATGTATGAATATTTCTGTCATGTTATATTTCCGATAAACACAAACATCTATCCCTTTCAACAAAACATCACTGTGCCCTTTCTCAATGTTTTGAGTCTCCTCCATAAACCCTGAAAATGTTACTGGCGCCAAAGTTTTCTTGTATTTCCAATAGTTTGACTTTGTATGTGGAAAACAATTAGCGTCTCGCGGATGGCATTCCCCTCACCTCTTTTTTTTCTCTCACATTTCCTAGCTCAAAAAAACTTCACAGAAAGTGGGTTTTGTTTTTATGTTGTCATTGCAGATGACCGACACCATCATTTCACCCTGCACAGTCACTACATCCATCACACCACTGAGACACATACATCGACTCACGGAAGACAGGTTTGATTTTTTCTATTGGTTCATACAAAAGAGCGGTTATGAAATGATGGTTGTCACACAAGTTTTTCACGTATAAAAATGCGATCTCAAGAAAATACTTAAGTAGAATAATATTAATTATATAATTTGTACTAGTTTCTAAGTAATCCTGGTACTCCACCTATTTTGCTTATTTACTGATTGAGAAAATTAGGAAAAATACCAGGTTTTTTACCTAAATAAATACTAAATGTAATTTCCTCTCTTTCTTGAAAATAAAAATAAAAATAAAACGAAAAAAAGTTCGGAGAATCGGAGCACCGCCAAAACGTGGAATGCCTTGCAGTTGAGAACTTTTTCTTTTTAAATCCTCGTAAAACCTTGAGATTATAAGTGTCTTTTTTTGATATCATGAAAAACTAGGTGTGGTTGTTTTAGTTTGTTTTACATACATCCTGCAGTAGATGAAACCCATTCCAATGAAAACACATTTGTTTCAAAAAATGTGATTCTTACGATCACCTTCATTAGATTCCCTTTTTTGCTATTGTCAATGATTTTTTGAAGAAACGCACCAGCACTTCTACTTCTTCTGCCGCTTTTTTTGCTCCCATGGGCATAA</canonical>
            <polymorphic>CATATTTAAAAATACGGAAGACGAGAAGCCATGTATGAATATTTCTGTCATGTTATATTTCCGATAAACACAAACATCTATCCCTTTCAACAAAACATCACTGTGCCCTTTCTCAATGTTTTGAGTCTCCTCCATAAACCCTGAAAATGTTACTGGCGCCAAAGTTTTCTTGTATTTCCAATAGTTTGACTTTGTATGTGGAAAACAATTAGCGTCTCGCGGATGGCATTCCCCTCACCTCTTTTTTTTCTCTCACATTTCCTAGCTCAAAAAAACTTCACAGAAAGTGGGTTTTGTTTTTATGTTGTCATTGCAGATGACCGACACCATCATTTCACCCTGCACAGTCACTACATCCATCACACCACTGAGACACATACATCGACTCACGGAAGACAGGTTTGATTTTTTCTATTGGTTCATACAAAAGAGCGGTTATGAAATGATGGTTGTCACACAAGTTTTTCACGTATAAAAATGCGATCTCAAGAAAATACTTWAGTAGAATAATATTAATTATATAATTTGTACTAGTTTCTAAGTAATCCTGGTACTCCACCTATTTTGCTTATTTACTGATTGAGAAAATTAGGAAAAATACCAGGTTTTTTACCTAAATAAATACTAAATGTAATTTCCTCTCTTTCTTGAAAATAAAAATAAAAATAAAACGAAAAAAAGTTCGGAGAATCGGAGCACCGCCAAAACGTGGAATGCCTTGCAGTTGAGAACTTTTTCTTTTTAAATCCTCGTAAAACCTTGAGATTATAAGTGTCTTTTTTTGATATCATGAAAAACTAGGTGTGGTTGTTTTAGTTTGTTTTACATACATCCTGCAGTAGATGAAACCCATTCCAATGAAAACACATTTGTTTCAAAAAATGTGATTCTTACGATCACCTTCATTAGATTCCCTTTTTTGCTATTGTCAATGATTTTTTGAAGAAACGCACCAGCACTTCTACTTCTTCTGCCGCTTTTTTTGCTCCCATGGGCATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTTAAG</site>
                <isoschizomers>
                    <enzyme>AflII</enzyme>
                    <enzyme>BfrI</enzyme>
                    <enzyme>BspTI</enzyme>
                    <enzyme>Bst98I</enzyme>
                    <enzyme>MspCI</enzyme>
                    <enzyme>Vha464I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>492 258 229 15 6</canonical_bands>
                <polymorphic_bands>507 258 229 6</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>485 262 241 12</canonical_bands>
                <polymorphic_bands>485 274 241</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCACACCACTGAGACACATAC</pcr_primer_p1>
		<pcr_primer_p2>AAACCTGGTATTTTTCCTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCACACCACTGAGACACATACATCGACTCACGGAAGACAGGTTTGATTTTTTCTATTGGTTCATACAAAAGAGCGGTTATGAAATGATGGTTGTCACACAAGTTTTTCACGTATAAAAATGCGATCTCAAGAAAATACTTAAGTAGAATAATATTAATTATATAATTTGTACTAGTTTCTAAGTAATCCTGGTACTCCACCTATTTTGCTTATTTACTGATTGAGAAAATTAGGAAAAATACCAGGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATCACACCACTGAGACACATACATCGACTCACGGAAGACAGGTTTGATTTTTTCTATTGGTTCATACAAAAGAGCGGTTATGAAATGATGGTTGTCACACAAGTTTTTCACGTATAAAAATGCGATCTCAAGAAAATACTTWAGTAGAATAATATTAATTATATAATTTGTACTAGTTTCTAAGTAATCCTGGTACTCCACCTATTTTGCTTATTTACTGATTGAGAAAATTAGGAAAAATACCAGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12048</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>318649</contig_pos>
        <strand>+</strand>
        <context>AATGAGATTA[A/G]TTTGGTAGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTATCATACTTTCTCATATATAAATCTTAGGCTCCCAATGAATGAGATTA</left_flank>
        <right_flank>TTTGGTAGCTGAGAAATTCTACGACGTGCTCGACGAGCAGCTCTTAGACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAACAACACCAACAGCTCTCTTTTTTCCCTTCTCCGACCTCATTATTTATTCATAACTCACCCAAGAAGAAAGCTTCTTATGTTAATTGAAATATTTTATGAGATGCTTCTTGAATGCTTTTGTAATATATTTGATGAGCAAGGCGCATTTGAAGGACGTGTTTCGATTACACTTTTCCGTTTTTTTACGGTTCCCTAAAAGCAAAAAGACTAGAAATAGCATATAAGAAGTGTTTATCGAATTGGGGATGGATTTCTTTCTAGCACGTGATTCTCCCCTCCCTTTTGCTTCTTCTCGCTCTCATTTTTCAGTTAATCCGTTCGTTCAATTCTTTTATCAAATCCTCTTGTCATGTTTTTGTTCATTGGGGATTAATTCACAAACAATTTTTACATACCCCGCATTTTGCGTTTCTCTTCTTATCCGCTTTATATTCTTCTCACAAGTATCATACTTTCTCATATATAAATCTTAGGCTCCCAATGAATGAGATTAATTTGGTAGCTGAGAAATTCTACGACGTGCTCGACGAGCAGCTCTTAGACAGTGAGAAATTTCTTGCTAAAATGGGTGCCCCAACTGAAGATACCATTGTTAGTAGAAAACAGTCGGCGAGCGATCTACAAAGTCGTCTCAAAACGAGAAAGCTGCTCGGTGTGGGAGAGTTGGCAGGAGACAATGGCGATGTTTACAAATCAAAAGTGAGTTATTTTTCAATTTTTCGAGTTTAACTATTCAAATCAGATATCTCAACTTCTCGGAATCAATGAATCACTCTACGTCCGTTTGCCACGAGGAATGTTCGTATGGAACACTCTGAACTCTGTCTACTTCCTTCTAATCGGCGCAATAGTGAGTTCATATTTTGAATTAATGAACTTCATGTCATTCTTCAGTGTCTGTTCCTGCCGCGTTTTGGTCTATACCTAGACCATGGAATCGAATCAATTCCAATCGAAGCATACGTGATTGTTCGTTACTATGGTGTCACGCTGC</canonical>
            <polymorphic>GAAAAACAACACCAACAGCTCTCTTTTTTCCCTTCTCCGACCTCATTATTTATTCATAACTCACCCAAGAAGAAAGCTTCTTATGTTAATTGAAATATTTTATGAGATGCTTCTTGAATGCTTTTGTAATATATTTGATGAGCAAGGCGCATTTGAAGGACGTGTTTCGATTACACTTTTCCGTTTTTTTACGGTTCCCTAAAAGCAAAAAGACTAGAAATAGCATATAAGAAGTGTTTATCGAATTGGGGATGGATTTCTTTCTAGCACGTGATTCTCCCCTCCCTTTTGCTTCTTCTCGCTCTCATTTTTCAGTTAATCCGTTCGTTCAATTCTTTTATCAAATCCTCTTGTCATGTTTTTGTTCATTGGGGATTAATTCACAAACAATTTTTACATACCCCGCATTTTGCGTTTCTCTTCTTATCCGCTTTATATTCTTCTCACAAGTATCATACTTTCTCATATATAAATCTTAGGCTCCCAATGAATGAGATTARTTTGGTAGCTGAGAAATTCTACGACGTGCTCGACGAGCAGCTCTTAGACAGTGAGAAATTTCTTGCTAAAATGGGTGCCCCAACTGAAGATACCATTGTTAGTAGAAAACAGTCGGCGAGCGATCTACAAAGTCGTCTCAAAACGAGAAAGCTGCTCGGTGTGGGAGAGTTGGCAGGAGACAATGGCGATGTTTACAAATCAAAAGTGAGTTATTTTTCAATTTTTCGAGTTTAACTATTCAAATCAGATATCTCAACTTCTCGGAATCAATGAATCACTCTACGTCCGTTTGCCACGAGGAATGTTCGTATGGAACACTCTGAACTCTGTCTACTTCCTTCTAATCGGCGCAATAGTGAGTTCATATTTTGAATTAATGAACTTCATGTCATTCTTCAGTGTCTGTTCCTGCCGCGTTTTGGTCTATACCTAGACCATGGAATCGAATCAATTCCAATCGAAGCATACGTGATTGTTCGTTACTATGGTGTCACGCTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>378 376 125 121</canonical_bands>
                <polymorphic_bands>499 376 125</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>235 230 143 125 121 86 60</canonical_bands>
                <polymorphic_bands>356 230 143 125 86 60</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>163 156 153 110 87 87 78 50 47 42 16 11</canonical_bands>
                <polymorphic_bands>163 156 153 126 87 87 78 50 47 42 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGATTAATTCACAAACAATTT</pcr_primer_p1>
		<pcr_primer_p2>CCGACTGTTTTCTACTAACAATG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GGGATTAATTCACAAACAATTTTTACATACCCCGCATTTTGCGTTTCTCTTCTTATCCGCTTTATATTCTTCTCACAAGTATCATACTTTCTCATATATAAATCTTAGGCTCCCAATGAATGAGATTAATTTGGTAGCTGAGAAATTCTACGACGTGCTCGACGAGCAGCTCTTAGACAGTGAGAAATTTCTTGCTAAAATGGGTGCCCCAACTGAAGATACCATTGTTAGTAGAAAACAGTCGG</canonical_amplicon>
		<polymorphic_amplicon>GGGATTAATTCACAAACAATTTTTACATACCCCGCATTTTGCGTTTCTCTTCTTATCCGCTTTATATTCTTCTCACAAGTATCATACTTTCTCATATATAAATCTTAGGCTCCCAATGAATGAGATTARTTTGGTAGCTGAGAAATTCTACGACGTGCTCGACGAGCAGCTCTTAGACAGTGAGAAATTTCTTGCTAAAATGGGTGCCCCAACTGAAGATACCATTGTTAGTAGAAAACAGTCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12049</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>319315</contig_pos>
        <strand>+</strand>
        <context>AACTAATACT[A/T]AAAAAAACGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTGGTCACTGCAGTTTTCCATATAGTTGTTCTCATTGGTAACTAATACT</left_flank>
        <right_flank>AAAAAAACGTTGAAATCTTTGTTTCAGTATCTACTGCTTCCAACGGTACA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTTGGCAGGAGACAATGGCGATGTTTACAAATCAAAAGTGAGTTATTTTTCAATTTTTCGAGTTTAACTATTCAAATCAGATATCTCAACTTCTCGGAATCAATGAATCACTCTACGTCCGTTTGCCACGAGGAATGTTCGTATGGAACACTCTGAACTCTGTCTACTTCCTTCTAATCGGCGCAATAGTGAGTTCATATTTTGAATTAATGAACTTCATGTCATTCTTCAGTGTCTGTTCCTGCCGCGTTTTGGTCTATACCTAGACCATGGAATCGAATCAATTCCAATCGAAGCATACGTGATTGTTCGTTACTATGGTGTCACGCTGCTGTCCTTTGGATTGTTGTTCAAGTAATATCCTTAATTGAAATTGAGTCGAATTTTCATTTCTGGCAGATTCATCTTGCAACAACGGGAAAATCGAGCGGACATCGCACTGCTTTTGTTGGTCACTGCAGTTTTCCATATAGTTGTTCTCATTGGTAACTAATACTAAAAAAAACGTTGAAATCTTTGTTTCAGTATCTACTGCTTCCAACGGTACAGTCACTTGGTGGTCCGCGACAATTCGTCTGAGTCTCATTCTTGGAAATTTATTTTATCACGCTTTTGTTGACGGCCAAGGTAAGTGAAGTAAATAGTCGGCATGTTTTCTAAGGTTTTTTTTCTAAGGTTTTCTTATGTTGTTGTCTAAGCTTTTCATTCATTTTCCTTCATTCCTGTGGGATAAATATTTTATAGTTTGTAGAAAGTCATTTTGAAATTGGATCTACTCAAAACGTTCGAATTACCTATTAACTTTTAGGAGGACTTCATCGCCAATTGATCCGAGTCATTGAAGACTCCTCATACTTCTGCTTATCGCCGATCCTTGAAAAGAAAACCACAATCGGTGTCGTTGAAGACTTGCTCGAAGATTTTGAAAAAGTCAAAAAGAATGAATAAAATAACCATTTTTCGACACACACGTTTCTCGATTCTCTCCATCGTTCAAC</canonical>
            <polymorphic>GAGTTGGCAGGAGACAATGGCGATGTTTACAAATCAAAAGTGAGTTATTTTTCAATTTTTCGAGTTTAACTATTCAAATCAGATATCTCAACTTCTCGGAATCAATGAATCACTCTACGTCCGTTTGCCACGAGGAATGTTCGTATGGAACACTCTGAACTCTGTCTACTTCCTTCTAATCGGCGCAATAGTGAGTTCATATTTTGAATTAATGAACTTCATGTCATTCTTCAGTGTCTGTTCCTGCCGCGTTTTGGTCTATACCTAGACCATGGAATCGAATCAATTCCAATCGAAGCATACGTGATTGTTCGTTACTATGGTGTCACGCTGCTGTCCTTTGGATTGTTGTTCAAGTAATATCCTTAATTGAAATTGAGTCGAATTTTCATTTCTGGCAGATTCATCTTGCAACAACGGGAAAATCGAGCGGACATCGCACTGCTTTTGTTGGTCACTGCAGTTTTCCATATAGTTGTTCTCATTGGTAACTAATACTWAAAAAAACGTTGAAATCTTTGTTTCAGTATCTACTGCTTCCAACGGTACAGTCACTTGGTGGTCCGCGACAATTCGTCTGAGTCTCATTCTTGGAAATTTATTTTATCACGCTTTTGTTGACGGCCAAGGTAAGTGAAGTAAATAGTCGGCATGTTTTCTAAGGTTTTTTTTCTAAGGTTTTCTTATGTTGTTGTCTAAGCTTTTCATTCATTTTCCTTCATTCCTGTGGGATAAATATTTTATAGTTTGTAGAAAGTCATTTTGAAATTGGATCTACTCAAAACGTTCGAATTACCTATTAACTTTTAGGAGGACTTCATCGCCAATTGATCCGAGTCATTGAAGACTCCTCATACTTCTGCTTATCGCCGATCCTTGAAAAGAAAACCACAATCGGTGTCGTTGAAGACTTGCTCGAAGATTTTGAAAAAGTCAAAAAGAATGAATAAAATAACCATTTTTCGACACACACGTTTCTCGATTCTCTCCATCGTTCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGAGTCGAATTTTCATTTCT</pcr_primer_p1>
		<pcr_primer_p2>GTCAACAAAAGCGTGATAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTGAGTCGAATTTTCATTTCTGGCAGATTCATCTTGCAACAACGGGAAAATCGAGCGGACATCGCACTGCTTTTGTTGGTCACTGCAGTTTTCCATATAGTTGTTCTCATTGGTAACTAATACTAAAAAAAACGTTGAAATCTTTGTTTCAGTATCTACTGCTTCCAACGGTACAGTCACTTGGTGGTCCGCGACAATTCGTCTGAGTCTCATTCTTGGAAATTTATTTTATCACGCTTTTGTTGAC</canonical_amplicon>
		<polymorphic_amplicon>AATTGAGTCGAATTTTCATTTCTGGCAGATTCATCTTGCAACAACGGGAAAATCGAGCGGACATCGCACTGCTTTTGTTGGTCACTGCAGTTTTCCATATAGTTGTTCTCATTGGTAACTAATACTWAAAAAAACGTTGAAATCTTTGTTTCAGTATCTACTGCTTCCAACGGTACAGTCACTTGGTGGTCCGCGACAATTCGTCTGAGTCTCATTCTTGGAAATTTATTTTATCACGCTTTTGTTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12077</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>384824</contig_pos>
        <strand>+</strand>
        <context>CACCACTTGG[A/C]CGAATCCTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CACAATATGATGAGATCTCCCATGGCATTTTTCGATGTGACACCACTTGG</left_flank>
        <right_flank>CGAATCCTTAATAGATTCGGAAAGGTATTATCCCAATCTACAAAAACATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAGAAGCACTCCTTGGACCAAAAACCAAAGAAAAGACACCAGAACCACCGAAACAGGCCAAAACCCAGTTAATTGAAAGAGAAGCAGTCGAAACTGGAAAAGTTAAATTTGAAATCTATATGTCTTATTTCCGCGCAATCGGTATGCTGATTGCACTGGTTTTCTTCTTGGTCTACGTTGCAAGTAGTGTACTAGGAGTGTTTAGTAACTTATATCTAGCCAGATGGTCTGATGATGCTAAACGGATTGCACTTGCTGGAAATGTGAGCGCTAGGGAAACATATGTCCGATTAGGAGTATACGCTATGCTGGGAATGGGTCAAGGTTTGTAGAACAGAAGTTAATCAAGGTCGATTCTATTTTTCAGCAATTTCTGTCTGTATGGCTTCTGTCATTATGGCTTTAGGAATGGTTCGCGCTAGTAGACTTCTTCACGGTGGCCTCTTGCACAATATGATGAGATCTCCCATGGCATTTTTCGATGTGACACCACTTGGACGAATCCTTAATAGATTCGGAAAGGTATTATCCCAATCTACAAAAACATCTAGACTTAAATAGTAAATCAGACTTACAGATCATCTACCTTCGTAGAGTCTCGCATACCATGAAATTTTCAAACTTTCAGTACTCAGAGTAAAAACTTTGCTTCAATACTTAAAGGGGGACTCCGGTCAATTCTTTTATTCCATCAAAATGTGTTTATTGTATGAAAATGTGTTAAAAGTTATCTATTTTCCGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCGAAAAACGCCATTGAAAAGGAAAAAAATTCAAAAAAAGATGCCGCCGAGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGCGAGCGGCGCGACTTTCTTACCGGACAATTTTTCCGGATTTGTTTCGCTTTTATCTCCGACAGGTAAAAAACGTTAAAAAACACTGTCGGCCACTTGAAAATAATGCTCTCAGGCGCCGTGGCCTAGGCTTCT</canonical>
            <polymorphic>GAAAGAAGCACTCCTTGGACCAAAAACCAAAGAAAAGACACCAGAACCACCGAAACAGGCCAAAACCCAGTTAATTGAAAGAGAAGCAGTCGAAACTGGAAAAGTTAAATTTGAAATCTATATGTCTTATTTCCGCGCAATCGGTATGCTGATTGCACTGGTTTTCTTCTTGGTCTACGTTGCAAGTAGTGTACTAGGAGTGTTTAGTAACTTATATCTAGCCAGATGGTCTGATGATGCTAAACGGATTGCACTTGCTGGAAATGTGAGCGCTAGGGAAACATATGTCCGATTAGGAGTATACGCTATGCTGGGAATGGGTCAAGGTTTGTAGAACAGAAGTTAATCAAGGTCGATTCTATTTTTCAGCAATTTCTGTCTGTATGGCTTCTGTCATTATGGCTTTAGGAATGGTTCGCGCTAGTAGACTTCTTCACGGTGGCCTCTTGCACAATATGATGAGATCTCCCATGGCATTTTTCGATGTGACACCACTTGGMCGAATCCTTAATAGATTCGGAAAGGTATTATCCCAATCTACAAAAACATCTAGACTTAAATAGTAAATCAGACTTACAGATCATCTACCTTCGTAGAGTCTCGCATACCATGAAATTTTCAAACTTTCAGTACTCAGAGTAAAAACTTTGCTTCAATACTTAAAGGGGGACTCCGGTCAATTCTTTTATTCCATCAAAATGTGTTTATTGTATGAAAATGTGTTAAAAGTTATCTATTTTCCGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCGAAAAACGCCATTGAAAAGGAAAAAAATTCAAAAAAAGATGCCGCCGAGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGCGAGCGGCGCGACTTTCTTACCGGACAATTTTTCCGGATTTGTTTCGCTTTTATCTCCGACAGGTAAAAAACGTTAAAAAACACTGTCGGCCACTTGAAAATAATGCTCTCAGGCGCCGTGGCCTAGGCTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCAAGGTCGATTCTATTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CGAAGGTAGATGATCTGTAAGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATCAAGGTCGATTCTATTTTTCAGCAATTTCTGTCTGTATGGCTTCTGTCATTATGGCTTTAGGAATGGTTCGCGCTAGTAGACTTCTTCACGGTGGCCTCTTGCACAATATGATGAGATCTCCCATGGCATTTTTCGATGTGACACCACTTGGACGAATCCTTAATAGATTCGGAAAGGTATTATCCCAATCTACAAAAACATCTAGACTTAAATAGTAAATCAGACTTACAGATCATCTACCTTCG</canonical_amplicon>
		<polymorphic_amplicon>AATCAAGGTCGATTCTATTTTTCAGCAATTTCTGTCTGTATGGCTTCTGTCATTATGGCTTTAGGAATGGTTCGCGCTAGTAGACTTCTTCACGGTGGCCTCTTGCACAATATGATGAGATCTCCCATGGCATTTTTCGATGTGACACCACTTGGMCGAATCCTTAATAGATTCGGAAAGGTATTATCCCAATCTACAAAAACATCTAGACTTAAATAGTAAATCAGACTTACAGATCATCTACCTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12078</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>448334</contig_pos>
        <strand>+</strand>
        <context>TTAAGACGCG[A/G]AATTTGTCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAGGATATCAAGCATAGCTCACATGGCCGATATTATTGGTTAAGACGCG</left_flank>
        <right_flank>AATTTGTCTTTTGAAACAATGCCGTTTATCTTCTCATTCAAAACGTCGTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGATGATTTTGAAGTGCACAGATAATTGTCAAAGAAGTTCCAACAGTTTTTTTGATGATTTCATTTTTAGGAGTGATCTGATTGGATGGCACAAAACTTTGCGTTACACTTACTAAGACAATGTCTATCAGGATATCCTCGAGTGTTCAATGATCCCAAAAACGATTGGAGCATTCCTTTACTACACTCGTTGAACAGTTGCCAGTGGGTTTCGCCTATATGGTGCACATTGGCCTTCATATTGAATCGAGCACTGCAAATTCGAAAGTCATAATGTATTTTCCGGTTATTTTTTTCGTTTTCTGGTTGACAATATAGAAACGCAATCCAAAAAAAGTTCATTGATTTTCTTCGTTTAAATCAGAAAATTGATTTTTTTTTAATTAAGGTTCATTCGACTTGAAACTCACCAAGTATGCCCAATCGCATTTGACATTAGAAGAATGAATAGGATATCAAGCATAGCTCACATGGCCGATATTATTGGTTAAGACGCGGAATTTGTCTTTTGAAACAATGCCGTTTATCTTCTCATTCAAAACGTCGTAGAAAATCTAACAAATGACAAGCGGAAGTAAAAATTAATTGAAAGAAAAAAGCAGGATGTGAATAGAGTAAGGTGAAGTGGAGGTGTTCGAAGATGTGACTAAACAAAAACTCCTAATGTTCCGAAAGTTGAGAAGGGAAAAGGATAAGCCGGAGAAAAAGAATCAGACGCAAGAATTTAATCAACTTTTTCATCACTTTTTTATTTTCCGTCAAAACACATTGTAATTACAACTTGAAGACGTCGGGCAATTGTTTCCAGAGAAACATCAGAAAGAGAACAAGACAGGGCAAAACCAGAAAGAATAACTATTGACTGCGCATCATTATACTCATAACTCAACTTTTCTGATCGGAAAAAAAATGAATATATAAAATCATTGGGAGCGGTACAAATAAATAAAATAACATCTGAAAAACACCATGGGTTTAAATGTTCATATTGCCTTTTA</canonical>
            <polymorphic>TCAGATGATTTTGAAGTGCACAGATAATTGTCAAAGAAGTTCCAACAGTTTTTTTGATGATTTCATTTTTAGGAGTGATCTGATTGGATGGCACAAAACTTTGCGTTACACTTACTAAGACAATGTCTATCAGGATATCCTCGAGTGTTCAATGATCCCAAAAACGATTGGAGCATTCCTTTACTACACTCGTTGAACAGTTGCCAGTGGGTTTCGCCTATATGGTGCACATTGGCCTTCATATTGAATCGAGCACTGCAAATTCGAAAGTCATAATGTATTTTCCGGTTATTTTTTTCGTTTTCTGGTTGACAATATAGAAACGCAATCCAAAAAAAGTTCATTGATTTTCTTCGTTTAAATCAGAAAATTGATTTTTTTTTAATTAAGGTTCATTCGACTTGAAACTCACCAAGTATGCCCAATCGCATTTGACATTAGAAGAATGAATAGGATATCAAGCATAGCTCACATGGCCGATATTATTGGTTAAGACGCGRAATTTGTCTTTTGAAACAATGCCGTTTATCTTCTCATTCAAAACGTCGTAGAAAATCTAACAAATGACAAGCGGAAGTAAAAATTAATTGAAAGAAAAAAGCAGGATGTGAATAGAGTAAGGTGAAGTGGAGGTGTTCGAAGATGTGACTAAACAAAAACTCCTAATGTTCCGAAAGTTGAGAAGGGAAAAGGATAAGCCGGAGAAAAAGAATCAGACGCAAGAATTTAATCAACTTTTTCATCACTTTTTTATTTTCCGTCAAAACACATTGTAATTACAACTTGAAGACGTCGGGCAATTGTTTCCAGAGAAACATCAGAAAGAGAACAAGACAGGGCAAAACCAGAAAGAATAACTATTGACTGCGCATCATTATACTCATAACTCAACTTTTCTGATCGGAAAAAAAATGAATATATAAAATCATTGGGAGCGGTACAAATAAATAAAATAACATCTGAAAAACACCATGGGTTTAAATGTTCATATTGCCTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>277 260 240 223</canonical_bands>
                <polymorphic_bands>463 277 260</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGATTTTCTTCGTTTAAATCAG</pcr_primer_p1>
		<pcr_primer_p2>AATTAATTTTTACTTCCGCTTGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTGATTTTCTTCGTTTAAATCAGAAAATTGATTTTTTTTTAATTAAGGTTCATTCGACTTGAAACTCACCAAGTATGCCCAATCGCATTTGACATTAGAAGAATGAATAGGATATCAAGCATAGCTCACATGGCCGATATTATTGGTTAAGACGCGGAATTTGTCTTTTGAAACAATGCCGTTTATCTTCTCATTCAAAACGTCGTAGAAAATCTAACAAATGACAAGCGGAAGTAAAAATTAATT</canonical_amplicon>
		<polymorphic_amplicon>TTGATTTTCTTCGTTTAAATCAGAAAATTGATTTTTTTTTAATTAAGGTTCATTCGACTTGAAACTCACCAAGTATGCCCAATCGCATTTGACATTAGAAGAATGAATAGGATATCAAGCATAGCTCACATGGCCGATATTATTGGTTAAGACGCGRAATTTGTCTTTTGAAACAATGCCGTTTATCTTCTCATTCAAAACGTCGTAGAAAATCTAACAAATGACAAGCGGAAGTAAAAATTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12079</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>448217</contig_pos>
        <strand></strand>
        <context>GAWTTTTTTT[T/A]AATTAAGGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAAAAAGTTCATTGATTTTCTTCGTTTAAATCAGAAAATTGATTTTTTTT</left_flank>
        <right_flank>AATTAAGGTTCATTCGACTTGAAACTCACCAAGTATGCCCAATCGCATTT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAATTATTCGAAAAATGAAATATTGTTTTGAAATCGTTTTTGAAATAAAATCCGGGCTGAGAGCACGGAAGCCTGTCAAATCTCGAAAATCTAGAATATTTCAAGAGTGGTGATTTCAGATGATTTTGAAGTGCACAGATAATTGTCAAAGAAGTTCCAACAGTTTTTTTGATGATTTCATTTTTAGGAGTGATCTGATTGGATGGCACAAAACTTTGCGTTACACTTACTAAGACAATGTCTATCAGGATATCCTCGAGTGTTCAATGATCCCAAAAACGATTGGAGCATTCCTTTACTACACTCGTTGAACAGTTGCCAGTGGGTTTCGCCTATATGGTGCACATTGGCCTTCATATTGAATCGAGCACTGCAAATTCGAAAGTCATAATGTATTTTCCGGTTATTTTTTTCGTTTTCTGGTTGACAATATAGAAACGCAATCCAAAAAAAGTTCATTGATTTTCTTCGTTTAAATCAGAAAATTGATTTTTTTTTAATTAAGGTTCATTCGACTTGAAACTCACCAAGTATGCCCAATCGCATTTGACATTAGAAGAATGAATAGGATATCAAGCATAGCTCACATGGCCGATATTATTGGTTAAGACGCGGAATTTGTCTTTTGAAACAATGCCGTTTATCTTCTCATTCAAAACGTCGTAGAAAATCTAACAAATGACAAGCGGAAGTAAAAATTAATTGAAAGAAAAAAGCAGGATGTGAATAGAGTAAGGTGAAGTGGAGGTGTTCGAAGATGTGACTAAACAAAAACTCCTAATGTTCCGAAAGTTGAGAAGGGAAAAGGATAAGCCGGAGAAAAAGAATCAGACGCAAGAATTTAATCAACTTTTTCATCACTTTTTTATTTTCCGTCAAAACACATTGTAATTACAACTTGAAGACGTCGGGCAATTGTTTCCAGAGAAACATCAGAAAGAGAACAAGACAGGGCAAAACCAGAAAGAATAACTATTGACTGCGCATCATTATACTCA</canonical>
            <polymorphic>GAAAATTATTCGAAAAATGAAATATTGTTTTGAAATCGTTTTTGAAATAAAATCCGGGCTGAGAGCACGGAAGCCTGTCAAATCTCGAAAATCTAGAATATTTCAAGAGTGGTGATTTCAGATGATTTTGAAGTGCACAGATAATTGTCAAAGAAGTTCCAACAGTTTTTTTGATGATTTCATTTTTAGGAGTGATCTGATTGGATGGCACAAAACTTTGCGTTACACTTACTAAGACAATGTCTATCAGGATATCCTCGAGTGTTCAATGATCCCAAAAACGATTGGAGCATTCCTTTACTACACTCGTTGAACAGTTGCCAGTGGGTTTCGCCTATATGGTGCACATTGGCCTTCATATTGAATCGAGCACTGCAAATTCGAAAGTCATAATGTATTTTCCGGTTATTTTTTTCGTTTTCTGGTTGACAATATAGAAACGCAATCCAAAAAAAGTTCATTGATTTTCTTCGTTTAAATCAGAAAATTGATTTTTTTTWAATTAAGGTTCATTCGACTTGAAACTCACCAAGTATGCCCAATCGCATTTGACATTAGAAGAATGAATAGGATATCAAGCATAGCTCACATGGCCGATATTATTGGTTAAGACGCGGAATTTGTCTTTTGAAACAATGCCGTTTATCTTCTCATTCAAAACGTCGTAGAAAATCTAACAAATGACAAGCGGAAGTAAAAATTAATTGAAAGAAAAAAGCAGGATGTGAATAGAGTAAGGTGAAGTGGAGGTGTTCGAAGATGTGACTAAACAAAAACTCCTAATGTTCCGAAAGTTGAGAAGGGAAAAGGATAAGCCGGAGAAAAAGAATCAGACGCAAGAATTTAATCAACTTTTTCATCACTTTTTTATTTTCCGTCAAAACACATTGTAATTACAACTTGAAGACGTCGGGCAATTGTTTCCAGAGAAACATCAGAAAGAGAACAAGACAGGGCAAAACCAGAAAGAATAACTATTGACTGCGCATCATTATACTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>475 156 143 104 94 24 4</canonical_bands>
                <polymorphic_bands>475 156 143 104 94 28</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAATTAA</site>
                <isoschizomers>
                    <enzyme>PacI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTTTTCTGGTTGACAATATAGA</pcr_primer_p1>
		<pcr_primer_p2>GACGTTTTGAATGAGAAGATAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGTTTTCTGGTTGACAATATAGAAACGCAATCCAAAAAAAGTTCATTGATTTTCTTCGTTTAAATCAGAAAATTGATTTTTTTTTAATTAAGGTTCATTCGACTTGAAACTCACCAAGTATGCCCAATCGCATTTGACATTAGAAGAATGAATAGGATATCAAGCATAGCTCACATGGCCGATATTATTGGTTAAGACGCGGAATTTGTCTTTTGAAACAATGCCGTTTATCTTCTCATTCAAAACGTC</canonical_amplicon>
		<polymorphic_amplicon>CGTTTTCTGGTTGACAATATAGAAACGCAATCCAAAAAAAGTTCATTGATTTTCTTCGTTTAAATCAGAAAATTGATTTTTTTTWAATTAAGGTTCATTCGACTTGAAACTCACCAAGTATGCCCAATCGCATTTGACATTAGAAGAATGAATAGGATATCAAGCATAGCTCACATGGCCGATATTATTGGTTAAGACGCGGAATTTGTCTTTTGAAACAATGCCGTTTATCTTCTCATTCAAAACGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12080</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>542888</contig_pos>
        <strand>+</strand>
        <context>GTGTGCTCCA[C/G]TGGTCTCGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATCTTGTTTCAGTCGTTTCCAACTGATACTTCACCTGCAGGTGTGCTCCA</left_flank>
        <right_flank>TGGTCTCGATTTCAGATGTAGAGTGGCTTTTTCGTGTGAGAAGCTTTTGC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGTATTCAGGTATTCCGATTCTCATGCCGACGTCGGTTCATGATTGATTGATTTAGTATTTCGTATTTTTTACATTTCCAATTTTTCAAATTATTTTTGAAGTGGAAAAAATCAGGATTTTTCTTAATTTCGAAATCTTCACCAAAACTTTGAACCAAAAAAGTAAACGCGATTTGTTTAAAAATAAATAAATGGAAAATCATCAAACTATTTGGTACGGCAAAACACATGTTGAAACATTTTTCTTATTCATATTATCAAACCATTCAATTTTTTTTGGTTCCCATATACTACCTCTGTTTAAACTAACCTTAATACTACCTCCATTAAATTCGTAAGAGAATCTACAATCATAAAGCGAATATTTCTTCGCAAACTCCTCTTCTGTCATTTCCAACATGGTTCTAATCAATACTTGAGGAGAAATTTTTCGATACACAGCTGAGCATCTTGTTTCAGTCGTTTCCAACTGATACTTCACCTGCAGGTGTGCTCCACTGGTCTCGATTTCAGATGTAGAGTGGCTTTTTCGTGTGAGAAGCTTTTGCTTTGCCATTTGGGCTTGTTTTTCTTCGTTATTAGGAATGTATCCACCGTTTAAACTGTCTCGTTTGCTTGTTGAAGAACACGTAGATGTTGCCTCTTCTTCAGAAGGTGAAAGTTGTGCTTCAGAAGATTCGTATTCCGTGAGCCGCTCAAGTTCAACTACATTTGTTTCTTGAATGTTGTTTTCGTCAATAACGCAGATATCATATGAAATATCACCGGGCATCTGGAAGATATATTGATTAAAAAAAAGAGAATTAAAAATTTCAAAAAGAACATAGACGACTTAAACATGAATAAACATATAAATGTGATCCTTGTTCGAGTATATATAGTCCTCTTCAGCCACCCCTTTACCTCTCAACTCCGCCCCTCTCCACCCACTCAAGACAAAAAATCTCCGTTCCTCTTCACGTTGTCAATCAAATTGAGAATGACAACGAGGAAAACTT</canonical>
            <polymorphic>TGTGTATTCAGGTATTCCGATTCTCATGCCGACGTCGGTTCATGATTGATTGATTTAGTATTTCGTATTTTTTACATTTCCAATTTTTCAAATTATTTTTGAAGTGGAAAAAATCAGGATTTTTCTTAATTTCGAAATCTTCACCAAAACTTTGAACCAAAAAAGTAAACGCGATTTGTTTAAAAATAAATAAATGGAAAATCATCAAACTATTTGGTACGGCAAAACACATGTTGAAACATTTTTCTTATTCATATTATCAAACCATTCAATTTTTTTTGGTTCCCATATACTACCTCTGTTTAAACTAACCTTAATACTACCTCCATTAAATTCGTAAGAGAATCTACAATCATAAAGCGAATATTTCTTCGCAAACTCCTCTTCTGTCATTTCCAACATGGTTCTAATCAATACTTGAGGAGAAATTTTTCGATACACAGCTGAGCATCTTGTTTCAGTCGTTTCCAACTGATACTTCACCTGCAGGTGTGCTCCASTGGTCTCGATTTCAGATGTAGAGTGGCTTTTTCGTGTGAGAAGCTTTTGCTTTGCCATTTGGGCTTGTTTTTCTTCGTTATTAGGAATGTATCCACCGTTTAAACTGTCTCGTTTGCTTGTTGAAGAACACGTAGATGTTGCCTCTTCTTCAGAAGGTGAAAGTTGTGCTTCAGAAGATTCGTATTCCGTGAGCCGCTCAAGTTCAACTACATTTGTTTCTTGAATGTTGTTTTCGTCAATAACGCAGATATCATATGAAATATCACCGGGCATCTGGAAGATATATTGATTAAAAAAAAGAGAATTAAAAATTTCAAAAAGAACATAGACGACTTAAACATGAATAAACATATAAATGTGATCCTTGTTCGAGTATATATAGTCCTCTTCAGCCACCCCTTTACCTCTCAACTCCGCCCCTCTCCACCCACTCAAGACAAAAAATCTCCGTTCCTCTTCACGTTGTCAATCAAATTGAGAATGACAACGAGGAAAACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>211 102 95 86 75 57 42 39 37 35 35 31 30 29 26 23 11 10 9 5 4 4 2 2</canonical_bands>
                <polymorphic_bands>211 102 95 86 75 57 42 39 37 35 35 31 31 30 29 23 11 10 9 4 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCAACATGGTTCTAATCAATAC</pcr_primer_p1>
		<pcr_primer_p2>CAACATCTACGTGTTCTTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCCAACATGGTTCTAATCAATACTTGAGGAGAAATTTTTCGATACACAGCTGAGCATCTTGTTTCAGTCGTTTCCAACTGATACTTCACCTGCAGGTGTGCTCCACTGGTCTCGATTTCAGATGTAGAGTGGCTTTTTCGTGTGAGAAGCTTTTGCTTTGCCATTTGGGCTTGTTTTTCTTCGTTATTAGGAATGTATCCACCGTTTAAACTGTCTCGTTTGCTTGTTGAAGAACACGTAGATGTTG</canonical_amplicon>
		<polymorphic_amplicon>TCCAACATGGTTCTAATCAATACTTGAGGAGAAATTTTTCGATACACAGCTGAGCATCTTGTTTCAGTCGTTTCCAACTGATACTTCACCTGCAGGTGTGCTCCASTGGTCTCGATTTCAGATGTAGAGTGGCTTTTTCGTGTGAGAAGCTTTTGCTTTGCCATTTGGGCTTGTTTTTCTTCGTTATTAGGAATGTATCCACCGTTTAAACTGTCTCGTTTGCTTGTTGAAGAACACGTAGATGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12081</snp_id>
        <super_contig>c006201094.Contig1</super_contig>
        <contig_pos>30252</contig_pos>
        <strand>+</strand>
        <context>GACCTCGAAA[C/T]CCGGAGAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACACGTTCTTCGTGATTGATGGAAGTTCGGCGATGTTCGAGACCTCGAAA</left_flank>
        <right_flank>CCGGAGAAGAATCAGAGTTCAAGACTGCGTTGAAGCTGATGCTCGATGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCTGAGAATCGTGACCGCCAGCAATTCAACGCCTGTCGCATAGATTCGATGGATATTGTCAATCGAATCAACGAAAAATATCTGGAACGCAACTCCTACAACCGTGTGGATCTTTCGTATATCTTCGCCCCGATGATGAAGATTTAGTTTGCTAAATGAAGCCTAAATTTCTACATTTCATTTTTTTGCTTTATTTTTAAACACTTCAATCACTTTTGTACCATATTGTTAGAATACTTTCAGGTTTGACTTATCTAGCTATTCACCCAACAACTTATTGATAAAATTGCATTGATTGATTACTTCTTATAAAATTCCGAAGAGTTTCAACAGTTCTTTCTTATTTCTATTTCCTATCGAGGTCCCTTTTCCATTTCTGAATCTTTATTATAGATGGATGAGACACGATTTGAAGAGGACGACTACGAGGGAGCAGCCAACAAAAAATACACGTTCTTCGTGATTGATGGAAGTTCGGCGATGTTCGAGACCTCGAAACCCGGAGAAGAATCAGAGTTCAAGACTGCGTTGAAGCTGATGCTCGATGAAATGGTCCGTGTGTGTTGCTCCAGAAGTCTGAACAACCACATCGGTGTAATTGTAACAGGAACAGTAAGTTCAGAATTATTGGAAGGTATTAGTTTTGGTGTTTTTCAGAAAAACTCGGAAACAGAAGGAATCGAGAACAGCACCATTCTAGTGCCGATGGGTGTTCTTGGACAGGAAGAAGTCAATACAATCAAAGAGATTATTGATGAAGGTGAGGGGTTGTCTTATAAGTTTTTGTTTCAGTTCGAAATTTCAGAGGATCTTCTGTCTGCTGTTACCAATATCACTGGGGGCCATCACGAATCCGACCTGTCGAATGTTCTCAACTACTGCAAACGTGTGTTCGCCAGTTGCCCAAACACACGACACCAATCTGTCATTTATCTGACGAACAATCGTAACCCATTTGGACGAGATAATTTCTGGGAATCGTCGTATTTCGTGAGTGAT</canonical>
            <polymorphic>CGCTGAGAATCGTGACCGCCAGCAATTCAACGCCTGTCGCATAGATTCGATGGATATTGTCAATCGAATCAACGAAAAATATCTGGAACGCAACTCCTACAACCGTGTGGATCTTTCGTATATCTTCGCCCCGATGATGAAGATTTAGTTTGCTAAATGAAGCCTAAATTTCTACATTTCATTTTTTTGCTTTATTTTTAAACACTTCAATCACTTTTGTACCATATTGTTAGAATACTTTCAGGTTTGACTTATCTAGCTATTCACCCAACAACTTATTGATAAAATTGCATTGATTGATTACTTCTTATAAAATTCCGAAGAGTTTCAACAGTTCTTTCTTATTTCTATTTCCTATCGAGGTCCCTTTTCCATTTCTGAATCTTTATTATAGATGGATGAGACACGATTTGAAGAGGACGACTACGAGGGAGCAGCCAACAAAAAATACACGTTCTTCGTGATTGATGGAAGTTCGGCGATGTTCGAGACCTCGAAAYCCGGAGAAGAATCAGAGTTCAAGACTGCGTTGAAGCTGATGCTCGATGAAATGGTCCGTGTGTGTTGCTCCAGAAGTCTGAACAACCACATCGGTGTAATTGTAACAGGAACAGTAAGTTCAGAATTATTGGAAGGTATTAGTTTTGGTGTTTTTCAGAAAAACTCGGAAACAGAAGGAATCGAGAACAGCACCATTCTAGTGCCGATGGGTGTTCTTGGACAGGAAGAAGTCAATACAATCAAAGAGATTATTGATGAAGGTGAGGGGTTGTCTTATAAGTTTTTGTTTCAGTTCGAAATTTCAGAGGATCTTCTGTCTGCTGTTACCAATATCACTGGGGGCCATCACGAATCCGACCTGTCGAATGTTCTCAACTACTGCAAACGTGTGTTCGCCAGTTGCCCAAACACACGACACCAATCTGTCATTTATCTGACGAACAATCGTAACCCATTTGGACGAGATAATTTCTGGGAATCGTCGTATTTCGTGAGTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTTCCATTTCTGAATCTTTATT</pcr_primer_p1>
		<pcr_primer_p2>ACTGTTCCTGTTACAATTACACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTTTCCATTTCTGAATCTTTATTATAGATGGATGAGACACGATTTGAAGAGGACGACTACGAGGGAGCAGCCAACAAAAAATACACGTTCTTCGTGATTGATGGAAGTTCGGCGATGTTCGAGACCTCGAAACCCGGAGAAGAATCAGAGTTCAAGACTGCGTTGAAGCTGATGCTCGATGAAATGGTCCGTGTGTGTTGCTCCAGAAGTCTGAACAACCACATCGGTGTAATTGTAACAGGAACAGT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTCCATTTCTGAATCTTTATTATAGATGGATGAGACACGATTTGAAGAGGACGACTACGAGGGAGCAGCCAACAAAAAATACACGTTCTTCGTGATTGATGGAAGTTCGGCGATGTTCGAGACCTCGAAAYCCGGAGAAGAATCAGAGTTCAAGACTGCGTTGAAGCTGATGCTCGATGAAATGGTCCGTGTGTGTTGCTCCAGAAGTCTGAACAACCACATCGGTGTAATTGTAACAGGAACAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12082</snp_id>
        <super_contig>c006201094.Contig1</super_contig>
        <contig_pos>32542</contig_pos>
        <strand>+</strand>
        <context>CTATTTGAAC[A/G]ATAACCCATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAGCAAGACCAAGAATGATGTCATCAGTCTAATTGAGACCTATTTGAAC</left_flank>
        <right_flank>ATAACCCATCTACTACCTGGAATATCTAAACTGAATACCTTTAATTGTAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAAACAGTTTGTGAAGAAGTTGACGATGAGCTACAATCCGAGCTTCTATGAGAATCCACGTCTACTATCGGAAAGATCAGCACTTTGTTTGGAGGCAACTGGAGAAGAACTTATTGAGAGAAAGGATACAGTTGGTAGGATCAGACCCATTTAGACCAATTTTAAAAAAAAGTTTTATAGAGCCATACTATCAAATACCGAATCGTCTTCAAAGAGTTGGTGCCCAAATCGAGAGCATTGTAGAGACATTTGCGTTGAATGAAGACAAGAAAGAAGAGAAACCAAAAGGAGCGAGCAGAAAGCGAAAAACTGACGATGGAGATGGCTCGAGTGCCAAGAAAACAATGACTATTCGAGAATGTATTGCTGCTGAGCAGATGTCAAATTTCAAGAAGGATGAGCTTGTCGCGATGGCTGTGGAACACTGTGAAGCTCAGAAATCCATAAAGAGCAAGACCAAGAATGATGTCATCAGTCTAATTGAGACCTATTTGAACAATAACCCATCTACTACCTGGAATATCTAAACTGAATACCTTTAATTGTATTTTTAAAATTTATTTTGTGATCTGTAATATAAGAATCGGTGAATAAACAAACAAGAAACTATTTTATTGATATTTAGTTAACCATTATCCAAAAATTTTTGCTCGAAAACGGGTAGATCCATATAATGAAGACCGGCAAGAGCACCCAACGACCATAAGACGAAAACGAATGTAGAGAGAATGAAAACGAGTGACAAAAACGAATCTGAAAGAAAAAAGCTGAAATTGAAACAACTTTTTTGGGTGGACCCTCACAAAATACACAATTTTAGGAACATCTTGGGAAGATTCGAAAAAACTTTCAGGCGGTGTGACTTCATCGTTATAATTCACATTCATTGCTGACTGTCCATCGAATGATGATGGGGTTACGGTATTAGAAGTGGTCGTTGTGGATGGAGCACAAGAGTTTGCAGTTCTAGCACCAGATGAAGCTGTTGAATAAGTAGT</canonical>
            <polymorphic>ATGAAACAGTTTGTGAAGAAGTTGACGATGAGCTACAATCCGAGCTTCTATGAGAATCCACGTCTACTATCGGAAAGATCAGCACTTTGTTTGGAGGCAACTGGAGAAGAACTTATTGAGAGAAAGGATACAGTTGGTAGGATCAGACCCATTTAGACCAATTTTAAAAAAAAGTTTTATAGAGCCATACTATCAAATACCGAATCGTCTTCAAAGAGTTGGTGCCCAAATCGAGAGCATTGTAGAGACATTTGCGTTGAATGAAGACAAGAAAGAAGAGAAACCAAAAGGAGCGAGCAGAAAGCGAAAAACTGACGATGGAGATGGCTCGAGTGCCAAGAAAACAATGACTATTCGAGAATGTATTGCTGCTGAGCAGATGTCAAATTTCAAGAAGGATGAGCTTGTCGCGATGGCTGTGGAACACTGTGAAGCTCAGAAATCCATAAAGAGCAAGACCAAGAATGATGTCATCAGTCTAATTGAGACCTATTTGAACRATAACCCATCTACTACCTGGAATATCTAAACTGAATACCTTTAATTGTATTTTTAAAATTTATTTTGTGATCTGTAATATAAGAATCGGTGAATAAACAAACAAGAAACTATTTTATTGATATTTAGTTAACCATTATCCAAAAATTTTTGCTCGAAAACGGGTAGATCCATATAATGAAGACCGGCAAGAGCACCCAACGACCATAAGACGAAAACGAATGTAGAGAGAATGAAAACGAGTGACAAAAACGAATCTGAAAGAAAAAAGCTGAAATTGAAACAACTTTTTTGGGTGGACCCTCACAAAATACACAATTTTAGGAACATCTTGGGAAGATTCGAAAAAACTTTCAGGCGGTGTGACTTCATCGTTATAATTCACATTCATTGCTGACTGTCCATCGAATGATGATGGGGTTACGGTATTAGAAGTGGTCGTTGTGGATGGAGCACAAGAGTTTGCAGTTCTAGCACCAGATGAAGCTGTTGAATAAGTAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGCTCAGAAATCCATAAAGA</pcr_primer_p1>
		<pcr_primer_p2>ATTATATGGATCTACCCGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAGCTCAGAAATCCATAAAGAGCAAGACCAAGAATGATGTCATCAGTCTAATTGAGACCTATTTGAACAATAACCCATCTACTACCTGGAATATCTAAACTGAATACCTTTAATTGTATTTTTAAAATTTATTTTGTGATCTGTAATATAAGAATCGGTGAATAAACAAACAAGAAACTATTTTATTGATATTTAGTTAACCATTATCCAAAAATTTTTGCTCGAAAACGGGTAGATCCATATAAT</canonical_amplicon>
		<polymorphic_amplicon>GAAGCTCAGAAATCCATAAAGAGCAAGACCAAGAATGATGTCATCAGTCTAATTGAGACCTATTTGAACRATAACCCATCTACTACCTGGAATATCTAAACTGAATACCTTTAATTGTATTTTTAAAATTTATTTTGTGATCTGTAATATAAGAATCGGTGAATAAACAAACAAGAAACTATTTTATTGATATTTAGTTAACCATTATCCAAAAATTTTTGCTCGAAAACGGGTAGATCCATATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12083</snp_id>
        <super_contig>c006201094.Contig1</super_contig>
        <contig_pos>32208</contig_pos>
        <strand>+</strand>
        <context>GACCAATTTT[A/T]AAAAAAAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGAGAGAAAGGATACAGTTGGTAGGATCAGACCCATTTAGACCAATTTT</left_flank>
        <right_flank>AAAAAAAGTTTTATAGAGCCATACTATCAAATACCGAATCGTCTTCAAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGGACAAAAGATGAGAATTGTTGCATTGGTTCCATTCAAAAAGGATATGACGCTCATAGAACCCAGTAATCTTGGAGAGGATGACGAGGAGATGGAAGACAAGAAACCCGACTTGGTGAAAAACCTTTAACTCGATAATTAAGTTTTAAACTGGATTTCTTTCAGCTTCGCCTAGAACAACAACGTGCTCAAGTTGACTCATCGGAATGGCTCCACGAAGGTTTCATGCTCGTCGGTCTCCCATTCCGCGAAGAGCTTCGCGACGATTTCCACCGTTTCGAAGAGCAGCAAACTGCTTTGACTGAAGAATCGACTGAGCAAGAAGTCAACGCGATGAAACAGTTTGTGAAGAAGTTGACGATGAGCTACAATCCGAGCTTCTATGAGAATCCACGTCTACTATCGGAAAGATCAGCACTTTGTTTGGAGGCAACTGGAGAAGAACTTATTGAGAGAAAGGATACAGTTGGTAGGATCAGACCCATTTAGACCAATTTTAAAAAAAAGTTTTATAGAGCCATACTATCAAATACCGAATCGTCTTCAAAGAGTTGGTGCCCAAATCGAGAGCATTGTAGAGACATTTGCGTTGAATGAAGACAAGAAAGAAGAGAAACCAAAAGGAGCGAGCAGAAAGCGAAAAACTGACGATGGAGATGGCTCGAGTGCCAAGAAAACAATGACTATTCGAGAATGTATTGCTGCTGAGCAGATGTCAAATTTCAAGAAGGATGAGCTTGTCGCGATGGCTGTGGAACACTGTGAAGCTCAGAAATCCATAAAGAGCAAGACCAAGAATGATGTCATCAGTCTAATTGAGACCTATTTGAACAATAACCCATCTACTACCTGGAATATCTAAACTGAATACCTTTAATTGTATTTTTAAAATTTATTTTGTGATCTGTAATATAAGAATCGGTGAATAAACAAACAAGAAACTATTTTATTGATATTTAGTTAACCATTATCCAAAAATTTTTGCTCGAAAACGGGTAG</canonical>
            <polymorphic>TGGGACAAAAGATGAGAATTGTTGCATTGGTTCCATTCAAAAAGGATATGACGCTCATAGAACCCAGTAATCTTGGAGAGGATGACGAGGAGATGGAAGACAAGAAACCCGACTTGGTGAAAAACCTTTAACTCGATAATTAAGTTTTAAACTGGATTTCTTTCAGCTTCGCCTAGAACAACAACGTGCTCAAGTTGACTCATCGGAATGGCTCCACGAAGGTTTCATGCTCGTCGGTCTCCCATTCCGCGAAGAGCTTCGCGACGATTTCCACCGTTTCGAAGAGCAGCAAACTGCTTTGACTGAAGAATCGACTGAGCAAGAAGTCAACGCGATGAAACAGTTTGTGAAGAAGTTGACGATGAGCTACAATCCGAGCTTCTATGAGAATCCACGTCTACTATCGGAAAGATCAGCACTTTGTTTGGAGGCAACTGGAGAAGAACTTATTGAGAGAAAGGATACAGTTGGTAGGATCAGACCCATTTAGACCAATTTTWAAAAAAAGTTTTATAGAGCCATACTATCAAATACCGAATCGTCTTCAAAGAGTTGGTGCCCAAATCGAGAGCATTGTAGAGACATTTGCGTTGAATGAAGACAAGAAAGAAGAGAAACCAAAAGGAGCGAGCAGAAAGCGAAAAACTGACGATGGAGATGGCTCGAGTGCCAAGAAAACAATGACTATTCGAGAATGTATTGCTGCTGAGCAGATGTCAAATTTCAAGAAGGATGAGCTTGTCGCGATGGCTGTGGAACACTGTGAAGCTCAGAAATCCATAAAGAGCAAGACCAAGAATGATGTCATCAGTCTAATTGAGACCTATTTGAACAATAACCCATCTACTACCTGGAATATCTAAACTGAATACCTTTAATTGTATTTTTAAAATTTATTTTGTGATCTGTAATATAAGAATCGGTGAATAAACAAACAAGAAACTATTTTATTGATATTTAGTTAACCATTATCCAAAAATTTTTGCTCGAAAACGGGTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>389 351 148 112</canonical_bands>
                <polymorphic_bands>740 148 112</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>377 351 128 75 38 12 12 7</canonical_bands>
                <polymorphic_bands>728 128 75 38 12 12 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATGAAACAGTTTGTGAAGAAGT</pcr_primer_p1>
		<pcr_primer_p2>GTCTCTACAATGCTCTCGATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATGAAACAGTTTGTGAAGAAGTTGACGATGAGCTACAATCCGAGCTTCTATGAGAATCCACGTCTACTATCGGAAAGATCAGCACTTTGTTTGGAGGCAACTGGAGAAGAACTTATTGAGAGAAAGGATACAGTTGGTAGGATCAGACCCATTTAGACCAATTTTAAAAAAAAGTTTTATAGAGCCATACTATCAAATACCGAATCGTCTTCAAAGAGTTGGTGCCCAAATCGAGAGCATTGTAGAGAC</canonical_amplicon>
		<polymorphic_amplicon>GATGAAACAGTTTGTGAAGAAGTTGACGATGAGCTACAATCCGAGCTTCTATGAGAATCCACGTCTACTATCGGAAAGATCAGCACTTTGTTTGGAGGCAACTGGAGAAGAACTTATTGAGAGAAAGGATACAGTTGGTAGGATCAGACCCATTTAGACCAATTTTWAAAAAAAGTTTTATAGAGCCATACTATCAAATACCGAATCGTCTTCAAAGAGTTGGTGCCCAAATCGAGAGCATTGTAGAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12084</snp_id>
        <super_contig>c006201094.Contig1</super_contig>
        <contig_pos>60255</contig_pos>
        <strand>+</strand>
        <context>GATTCTGAAA[A/T]TCAAAATTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATATGTACATTATGATATGATCAGTCAAGGAATACAAGTGATTCTGAAA</left_flank>
        <right_flank>TCAAAATTAATGGTGTCATTTCATTTTTTAGTCAACTTACAACTAAAAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCGCACGAGTACTGTAGCCCAAAATGCTACATCATAAAAAAAACTCGAACATGCTTCTCTTCCATTTTTAATCGTTTGGTTTCCTGCTGTGTTGCGAATTANAAAAAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGGAGTCAGCTCTAGAGCTCTATGACGTTTTTTTTGAAACAGAAACCCCCAGAAACATGGAGCAATTGGAATGAAAAAATGGGAGGAAAGAAGTGGAATTGAATTCATATTCAACCAAGTGACAAGAAATTAAATGAAAACGGGTCGGATGAGTATATTTGACATTTTTGATGAATAACTGAACGGAAATTGGAAAACGGACGAAAAATATGGTAGACAGAAAAAAGGAAATTGAGTTTATATAGTGGAAAAATGCAAGAAAAGGGCATTCAAAGGATATGTACATTATGATATGATCAGTCAAGGAATACAAGTGATTCTGAAAATCAAAATTAATGGTGTCATTTCATTTTTTAGTCAACTTACAACTAAAAATACCAAAAACCACAGTGTTTACTTTGATGAGGTCAGAAGTAACGAGATAAATCAGAATCGTCATTTTGGGGGTTTCAAGGAAGTCTGTATTTTACAATTTCAGCCCCAGATCTTGTAAAACCTATAATAGAATGAGCCCTTTATCTTTTAACTTTGAACCAGCTTGTCTCGTTAAAGATACAAAAAAGTTGTCAACGGATAAATTGTTCATCATAATATCACAAATATTTCATAAGTCGACATATTTTCGATATCTTGCACAGGAATCGAGATAATTAAGCTCAAAGTTGACAATGTGGGGCCCGTCTATTACAGGTTTACGATATTTATCTGACGATTTCTTAAAAACAGTATGACTGTCTAAAATCTAGAAACATCTATAACCGTTTGACAGGTGTCCAATGCAGATAAAAATAGAAAAGTTGTTCGATTCGAGATGTTTTTGACTTTA</canonical>
            <polymorphic>TCCGCACGAGTACTGTAGCCCAAAATGCTACATCATAAAAAAAACTCGAACATGCTTCTCTTCCATTTTTAATCGTTTGGTTTCCTGCTGTGTTGCGAATTANAAAAAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGGAGTCAGCTCTAGAGCTCTATGACGTTTTTTTTGAAACAGAAACCCCCAGAAACATGGAGCAATTGGAATGAAAAAATGGGAGGAAAGAAGTGGAATTGAATTCATATTCAACCAAGTGACAAGAAATTAAATGAAAACGGGTCGGATGAGTATATTTGACATTTTTGATGAATAACTGAACGGAAATTGGAAAACGGACGAAAAATATGGTAGACAGAAAAAAGGAAATTGAGTTTATATAGTGGAAAAATGCAAGAAAAGGGCATTCAAAGGATATGTACATTATGATATGATCAGTCAAGGAATACAAGTGATTCTGAAAWTCAAAATTAATGGTGTCATTTCATTTTTTAGTCAACTTACAACTAAAAATACCAAAAACCACAGTGTTTACTTTGATGAGGTCAGAAGTAACGAGATAAATCAGAATCGTCATTTTGGGGGTTTCAAGGAAGTCTGTATTTTACAATTTCAGCCCCAGATCTTGTAAAACCTATAATAGAATGAGCCCTTTATCTTTTAACTTTGAACCAGCTTGTCTCGTTAAAGATACAAAAAAGTTGTCAACGGATAAATTGTTCATCATAATATCACAAATATTTCATAAGTCGACATATTTTCGATATCTTGCACAGGAATCGAGATAATTAAGCTCAAAGTTGACAATGTGGGGCCCGTCTATTACAGGTTTACGATATTTATCTGACGATTTCTTAAAAACAGTATGACTGTCTAAAATCTAGAAACATCTATAACCGTTTGACAGGTGTCCAATGCAGATAAAAATAGAAAAGTTGTTCGATTCGAGATGTTTTTGACTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGATGAGTATATTTGACATTTT</pcr_primer_p1>
		<pcr_primer_p2>TAAACACTGTGGTTTTTGGTATT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CGGATGAGTATATTTGACATTTTTGATGAATAACTGAACGGAAATTGGAAAACGGACGAAAAATATGGTAGACAGAAAAAAGGAAATTGAGTTTATATAGTGGAAAAATGCAAGAAAAGGGCATTCAAAGGATATGTACATTATGATATGATCAGTCAAGGAATACAAGTGATTCTGAAAATCAAAATTAATGGTGTCATTTCATTTTTTAGTCAACTTACAACTAAAAATACCAAAAACCACAGTGTTTA</canonical_amplicon>
		<polymorphic_amplicon>CGGATGAGTATATTTGACATTTTTGATGAATAACTGAACGGAAATTGGAAAACGGACGAAAAATATGGTAGACAGAAAAAAGGAAATTGAGTTTATATAGTGGAAAAATGCAAGAAAAGGGCATTCAAAGGATATGTACATTATGATATGATCAGTCAAGGAATACAAGTGATTCTGAAAWTCAAAATTAATGGTGTCATTTCATTTTTTAGTCAACTTACAACTAAAAATACCAAAAACCACAGTGTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12085</snp_id>
        <super_contig>c006201094.Contig1</super_contig>
        <contig_pos>60187</contig_pos>
        <strand>+</strand>
        <context>GAAAAATGCA[A/G]GAAAAGGGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATGGTAGACAGAAAAAAGGAAATTGAGTTTATATAGTGGAAAAATGCA</left_flank>
        <right_flank>GAAAAGGGCATTCAAAGGATATGTACATTATGATATGATCAGTCAAGGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATGAATTTTAATTGCTCATGCAAATAGAAATCAAAGTTTTTTAGGTCTGAAATTCTAAACAGGGATCCGCACGAGTACTGTAGCCCAAAATGCTACATCATAAAAAAAACTCGAACATGCTTCTCTTCCATTTTTAATCGTTTGGTTTCCTGCTGTGTTGCGAATTANAAAAAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGGAGTCAGCTCTAGAGCTCTATGACGTTTTTTTTGAAACAGAAACCCCCAGAAACATGGAGCAATTGGAATGAAAAAATGGGAGGAAAGAAGTGGAATTGAATTCATATTCAACCAAGTGACAAGAAATTAAATGAAAACGGGTCGGATGAGTATATTTGACATTTTTGATGAATAACTGAACGGAAATTGGAAAACGGACGAAAAATATGGTAGACAGAAAAAAGGAAATTGAGTTTATATAGTGGAAAAATGCAAGAAAAGGGCATTCAAAGGATATGTACATTATGATATGATCAGTCAAGGAATACAAGTGATTCTGAAAATCAAAATTAATGGTGTCATTTCATTTTTTAGTCAACTTACAACTAAAAATACCAAAAACCACAGTGTTTACTTTGATGAGGTCAGAAGTAACGAGATAAATCAGAATCGTCATTTTGGGGGTTTCAAGGAAGTCTGTATTTTACAATTTCAGCCCCAGATCTTGTAAAACCTATAATAGAATGAGCCCTTTATCTTTTAACTTTGAACCAGCTTGTCTCGTTAAAGATACAAAAAAGTTGTCAACGGATAAATTGTTCATCATAATATCACAAATATTTCATAAGTCGACATATTTTCGATATCTTGCACAGGAATCGAGATAATTAAGCTCAAAGTTGACAATGTGGGGCCCGTCTATTACAGGTTTACGATATTTATCTGACGATTTCTTAAAAACAGTATGACTGTCTAAAATCTAGAAACATCTATAA</canonical>
            <polymorphic>ATTATGAATTTTAATTGCTCATGCAAATAGAAATCAAAGTTTTTTAGGTCTGAAATTCTAAACAGGGATCCGCACGAGTACTGTAGCCCAAAATGCTACATCATAAAAAAAACTCGAACATGCTTCTCTTCCATTTTTAATCGTTTGGTTTCCTGCTGTGTTGCGAATTANAAAAAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGGAGTCAGCTCTAGAGCTCTATGACGTTTTTTTTGAAACAGAAACCCCCAGAAACATGGAGCAATTGGAATGAAAAAATGGGAGGAAAGAAGTGGAATTGAATTCATATTCAACCAAGTGACAAGAAATTAAATGAAAACGGGTCGGATGAGTATATTTGACATTTTTGATGAATAACTGAACGGAAATTGGAAAACGGACGAAAAATATGGTAGACAGAAAAAAGGAAATTGAGTTTATATAGTGGAAAAATGCARGAAAAGGGCATTCAAAGGATATGTACATTATGATATGATCAGTCAAGGAATACAAGTGATTCTGAAAATCAAAATTAATGGTGTCATTTCATTTTTTAGTCAACTTACAACTAAAAATACCAAAAACCACAGTGTTTACTTTGATGAGGTCAGAAGTAACGAGATAAATCAGAATCGTCATTTTGGGGGTTTCAAGGAAGTCTGTATTTTACAATTTCAGCCCCAGATCTTGTAAAACCTATAATAGAATGAGCCCTTTATCTTTTAACTTTGAACCAGCTTGTCTCGTTAAAGATACAAAAAAGTTGTCAACGGATAAATTGTTCATCATAATATCACAAATATTTCATAAGTCGACATATTTTCGATATCTTGCACAGGAATCGAGATAATTAAGCTCAAAGTTGACAATGTGGGGCCCGTCTATTACAGGTTTACGATATTTATCTGACGATTTCTTAAAAACAGTATGACTGTCTAAAATCTAGAAACATCTATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGATGAGTATATTTGACATTTT</pcr_primer_p1>
		<pcr_primer_p2>TAAACACTGTGGTTTTTGGTATT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CGGATGAGTATATTTGACATTTTTGATGAATAACTGAACGGAAATTGGAAAACGGACGAAAAATATGGTAGACAGAAAAAAGGAAATTGAGTTTATATAGTGGAAAAATGCAAGAAAAGGGCATTCAAAGGATATGTACATTATGATATGATCAGTCAAGGAATACAAGTGATTCTGAAAATCAAAATTAATGGTGTCATTTCATTTTTTAGTCAACTTACAACTAAAAATACCAAAAACCACAGTGTTTA</canonical_amplicon>
		<polymorphic_amplicon>CGGATGAGTATATTTGACATTTTTGATGAATAACTGAACGGAAATTGGAAAACGGACGAAAAATATGGTAGACAGAAAAAAGGAAATTGAGTTTATATAGTGGAAAAATGCARGAAAAGGGCATTCAAAGGATATGTACATTATGATATGATCAGTCAAGGAATACAAGTGATTCTGAAAATCAAAATTAATGGTGTCATTTCATTTTTTAGTCAACTTACAACTAAAAATACCAAAAACCACAGTGTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12086</snp_id>
        <super_contig>c006201094.Contig1</super_contig>
        <contig_pos>60150</contig_pos>
        <strand>+</strand>
        <context>TGGTAGACAG[A/G]AAAAAGGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGAATAACTGAACGGAAATTGGAAAACGGACGAAAAATATGGTAGACAG</left_flank>
        <right_flank>AAAAAGGAAATTGAGTTTATATAGTGGAAAAATGCAAGAAAAGGGCATTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAACCGGAAGTACAAGGAAGATTACTGTGGATCCTCATTATGAATTTTAATTGCTCATGCAAATAGAAATCAAAGTTTTTTAGGTCTGAAATTCTAAACAGGGATCCGCACGAGTACTGTAGCCCAAAATGCTACATCATAAAAAAAACTCGAACATGCTTCTCTTCCATTTTTAATCGTTTGGTTTCCTGCTGTGTTGCGAATTANAAAAAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGGAGTCAGCTCTAGAGCTCTATGACGTTTTTTTTGAAACAGAAACCCCCAGAAACATGGAGCAATTGGAATGAAAAAATGGGAGGAAAGAAGTGGAATTGAATTCATATTCAACCAAGTGACAAGAAATTAAATGAAAACGGGTCGGATGAGTATATTTGACATTTTTGATGAATAACTGAACGGAAATTGGAAAACGGACGAAAAATATGGTAGACAGAAAAAAGGAAATTGAGTTTATATAGTGGAAAAATGCAAGAAAAGGGCATTCAAAGGATATGTACATTATGATATGATCAGTCAAGGAATACAAGTGATTCTGAAAATCAAAATTAATGGTGTCATTTCATTTTTTAGTCAACTTACAACTAAAAATACCAAAAACCACAGTGTTTACTTTGATGAGGTCAGAAGTAACGAGATAAATCAGAATCGTCATTTTGGGGGTTTCAAGGAAGTCTGTATTTTACAATTTCAGCCCCAGATCTTGTAAAACCTATAATAGAATGAGCCCTTTATCTTTTAACTTTGAACCAGCTTGTCTCGTTAAAGATACAAAAAAGTTGTCAACGGATAAATTGTTCATCATAATATCACAAATATTTCATAAGTCGACATATTTTCGATATCTTGCACAGGAATCGAGATAATTAAGCTCAAAGTTGACAATGTGGGGCCCGTCTATTACAGGTTTACGATATTTATCTGACGATTTCTTAAA</canonical>
            <polymorphic>GGAACCGGAAGTACAAGGAAGATTACTGTGGATCCTCATTATGAATTTTAATTGCTCATGCAAATAGAAATCAAAGTTTTTTAGGTCTGAAATTCTAAACAGGGATCCGCACGAGTACTGTAGCCCAAAATGCTACATCATAAAAAAAACTCGAACATGCTTCTCTTCCATTTTTAATCGTTTGGTTTCCTGCTGTGTTGCGAATTANAAAAAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGGAGTCAGCTCTAGAGCTCTATGACGTTTTTTTTGAAACAGAAACCCCCAGAAACATGGAGCAATTGGAATGAAAAAATGGGAGGAAAGAAGTGGAATTGAATTCATATTCAACCAAGTGACAAGAAATTAAATGAAAACGGGTCGGATGAGTATATTTGACATTTTTGATGAATAACTGAACGGAAATTGGAAAACGGACGAAAAATATGGTAGACAGRAAAAAGGAAATTGAGTTTATATAGTGGAAAAATGCAAGAAAAGGGCATTCAAAGGATATGTACATTATGATATGATCAGTCAAGGAATACAAGTGATTCTGAAAATCAAAATTAATGGTGTCATTTCATTTTTTAGTCAACTTACAACTAAAAATACCAAAAACCACAGTGTTTACTTTGATGAGGTCAGAAGTAACGAGATAAATCAGAATCGTCATTTTGGGGGTTTCAAGGAAGTCTGTATTTTACAATTTCAGCCCCAGATCTTGTAAAACCTATAATAGAATGAGCCCTTTATCTTTTAACTTTGAACCAGCTTGTCTCGTTAAAGATACAAAAAAGTTGTCAACGGATAAATTGTTCATCATAATATCACAAATATTTCATAAGTCGACATATTTTCGATATCTTGCACAGGAATCGAGATAATTAAGCTCAAAGTTGACAATGTGGGGCCCGTCTATTACAGGTTTACGATATTTATCTGACGATTTCTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGATGAGTATATTTGACATTTT</pcr_primer_p1>
		<pcr_primer_p2>TAAACACTGTGGTTTTTGGTATT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CGGATGAGTATATTTGACATTTTTGATGAATAACTGAACGGAAATTGGAAAACGGACGAAAAATATGGTAGACAGAAAAAAGGAAATTGAGTTTATATAGTGGAAAAATGCAAGAAAAGGGCATTCAAAGGATATGTACATTATGATATGATCAGTCAAGGAATACAAGTGATTCTGAAAATCAAAATTAATGGTGTCATTTCATTTTTTAGTCAACTTACAACTAAAAATACCAAAAACCACAGTGTTTA</canonical_amplicon>
		<polymorphic_amplicon>CGGATGAGTATATTTGACATTTTTGATGAATAACTGAACGGAAATTGGAAAACGGACGAAAAATATGGTAGACAGRAAAAAGGAAATTGAGTTTATATAGTGGAAAAATGCAAGAAAAGGGCATTCAAAGGATATGTACATTATGATATGATCAGTCAAGGAATACAAGTGATTCTGAAAATCAAAATTAATGGTGTCATTTCATTTTTTAGTCAACTTACAACTAAAAATACCAAAAACCACAGTGTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12087</snp_id>
        <super_contig>c006201094.Contig1</super_contig>
        <contig_pos>60109</contig_pos>
        <strand>+</strand>
        <context>GATGAATAAC[C/T]GAACGGAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAATGAAAACGGGTCGGATGAGTATATTTGACATTTTTGATGAATAAC</left_flank>
        <right_flank>GAACGGAAATTGGAAAACGGACGAAAAATATGGTAGACAGAAAAAAGGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTGAAAATGAGGATGTGGGCAGAAGAAGAAGAAGAGGAATGGAACCGGAAGTACAAGGAAGATTACTGTGGATCCTCATTATGAATTTTAATTGCTCATGCAAATAGAAATCAAAGTTTTTTAGGTCTGAAATTCTAAACAGGGATCCGCACGAGTACTGTAGCCCAAAATGCTACATCATAAAAAAAACTCGAACATGCTTCTCTTCCATTTTTAATCGTTTGGTTTCCTGCTGTGTTGCGAATTANAAAAAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGGAGTCAGCTCTAGAGCTCTATGACGTTTTTTTTGAAACAGAAACCCCCAGAAACATGGAGCAATTGGAATGAAAAAATGGGAGGAAAGAAGTGGAATTGAATTCATATTCAACCAAGTGACAAGAAATTAAATGAAAACGGGTCGGATGAGTATATTTGACATTTTTGATGAATAACTGAACGGAAATTGGAAAACGGACGAAAAATATGGTAGACAGAAAAAAGGAAATTGAGTTTATATAGTGGAAAAATGCAAGAAAAGGGCATTCAAAGGATATGTACATTATGATATGATCAGTCAAGGAATACAAGTGATTCTGAAAATCAAAATTAATGGTGTCATTTCATTTTTTAGTCAACTTACAACTAAAAATACCAAAAACCACAGTGTTTACTTTGATGAGGTCAGAAGTAACGAGATAAATCAGAATCGTCATTTTGGGGGTTTCAAGGAAGTCTGTATTTTACAATTTCAGCCCCAGATCTTGTAAAACCTATAATAGAATGAGCCCTTTATCTTTTAACTTTGAACCAGCTTGTCTCGTTAAAGATACAAAAAAGTTGTCAACGGATAAATTGTTCATCATAATATCACAAATATTTCATAAGTCGACATATTTTCGATATCTTGCACAGGAATCGAGATAATTAAGCTCAAAGTTGACAATGTGGGGCCCG</canonical>
            <polymorphic>GCTGAAAATGAGGATGTGGGCAGAAGAAGAAGAAGAGGAATGGAACCGGAAGTACAAGGAAGATTACTGTGGATCCTCATTATGAATTTTAATTGCTCATGCAAATAGAAATCAAAGTTTTTTAGGTCTGAAATTCTAAACAGGGATCCGCACGAGTACTGTAGCCCAAAATGCTACATCATAAAAAAAACTCGAACATGCTTCTCTTCCATTTTTAATCGTTTGGTTTCCTGCTGTGTTGCGAATTANAAAAAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGGAGTCAGCTCTAGAGCTCTATGACGTTTTTTTTGAAACAGAAACCCCCAGAAACATGGAGCAATTGGAATGAAAAAATGGGAGGAAAGAAGTGGAATTGAATTCATATTCAACCAAGTGACAAGAAATTAAATGAAAACGGGTCGGATGAGTATATTTGACATTTTTGATGAATAACYGAACGGAAATTGGAAAACGGACGAAAAATATGGTAGACAGAAAAAAGGAAATTGAGTTTATATAGTGGAAAAATGCAAGAAAAGGGCATTCAAAGGATATGTACATTATGATATGATCAGTCAAGGAATACAAGTGATTCTGAAAATCAAAATTAATGGTGTCATTTCATTTTTTAGTCAACTTACAACTAAAAATACCAAAAACCACAGTGTTTACTTTGATGAGGTCAGAAGTAACGAGATAAATCAGAATCGTCATTTTGGGGGTTTCAAGGAAGTCTGTATTTTACAATTTCAGCCCCAGATCTTGTAAAACCTATAATAGAATGAGCCCTTTATCTTTTAACTTTGAACCAGCTTGTCTCGTTAAAGATACAAAAAAGTTGTCAACGGATAAATTGTTCATCATAATATCACAAATATTTCATAAGTCGACATATTTTCGATATCTTGCACAGGAATCGAGATAATTAAGCTCAAAGTTGACAATGTGGGGCCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGGGAGGAAAGAAGT</pcr_primer_p1>
		<pcr_primer_p2>GAATCACTTGTATTCCTTGACTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGGGAGGAAAGAAGTGGAATTGAATTCATATTCAACCAAGTGACAAGAAATTAAATGAAAACGGGTCGGATGAGTATATTTGACATTTTTGATGAATAACTGAACGGAAATTGGAAAACGGACGAAAAATATGGTAGACAGAAAAAAGGAAATTGAGTTTATATAGTGGAAAAATGCAAGAAAAGGGCATTCAAAGGATATGTACATTATGATATGATCAGTCAAGGAATACAAGTGATTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGGGAGGAAAGAAGTGGAATTGAATTCATATTCAACCAAGTGACAAGAAATTAAATGAAAACGGGTCGGATGAGTATATTTGACATTTTTGATGAATAACYGAACGGAAATTGGAAAACGGACGAAAAATATGGTAGACAGAAAAAAGGAAATTGAGTTTATATAGTGGAAAAATGCAAGAAAAGGGCATTCAAAGGATATGTACATTATGATATGATCAGTCAAGGAATACAAGTGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12088</snp_id>
        <super_contig>c006201094.Contig1</super_contig>
        <contig_pos>59967</contig_pos>
        <strand></strand>
        <context>MTTTTTTTGM[A/C]ACAGAAACCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAGAGAGAGAAAAGGAGTCAGCTCTAGAGCTCTATGACGTTTTTTTTGA</left_flank>
        <right_flank>ACAGAAACCCCCAGAAACATGGAGCAATTGGAATGAAAAAATGGGAGGAA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACAAGATCTCATGAGATGAAAAAGAAAAAAGAAACATCTGCTCGGAGAGAGGCTTGTCCAGGACTGGCCTCAGGGGTTGTGCTGGCTCTTTTGGCTGGAATGGAAAAGAAAAAAACCGAGAAGGCATAGAAGGAATGGCGGCTGAAAATGAGGATGTGGGCAGAAGAAGAAGAAGAGGAATGGAACCGGAAGTACAAGGAAGATTACTGTGGATCCTCATTATGAATTTTAATTGCTCATGCAAATAGAAATCAAAGTTTTTTAGGTCTGAAATTCTAAACAGGGATCCGCACGAGTACTGTAGCCCAAAATGCTACATCATAAAAAAAACTCGAACATGCTTCTCTTCCATTTTTAATCGTTTGGTTTCCTGCTGTGTTGCGAATTANAAAAAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGGAGTCAGCTCTAGAGCTCTATGACGTTTTTTTTGAAACAGAAACCCCCAGAAACATGGAGCAATTGGAATGAAAAAATGGGAGGAAAGAAGTGGAATTGAATTCATATTCAACCAAGTGACAAGAAATTAAATGAAAACGGGTCGGATGAGTATATTTGACATTTTTGATGAATAACTGAACGGAAATTGGAAAACGGACGAAAAATATGGTAGACAGAAAAAAGGAAATTGAGTTTATATAGTGGAAAAATGCAAGAAAAGGGCATTCAAAGGATATGTACATTATGATATGATCAGTCAAGGAATACAAGTGATTCTGAAAATCAAAATTAATGGTGTCATTTCATTTTTTAGTCAACTTACAACTAAAAATACCAAAAACCACAGTGTTTACTTTGATGAGGTCAGAAGTAACGAGATAAATCAGAATCGTCATTTTGGGGGTTTCAAGGAAGTCTGTATTTTACAATTTCAGCCCCAGATCTTGTAAAACCTATAATAGAATGAGCCCTTTATCTTTTAACTTTGAACCAGC</canonical>
            <polymorphic>GTACAAGATCTCATGAGATGAAAAAGAAAAAAGAAACATCTGCTCGGAGAGAGGCTTGTCCAGGACTGGCCTCAGGGGTTGTGCTGGCTCTTTTGGCTGGAATGGAAAAGAAAAAAACCGAGAAGGCATAGAAGGAATGGCGGCTGAAAATGAGGATGTGGGCAGAAGAAGAAGAAGAGGAATGGAACCGGAAGTACAAGGAAGATTACTGTGGATCCTCATTATGAATTTTAATTGCTCATGCAAATAGAAATCAAAGTTTTTTAGGTCTGAAATTCTAAACAGGGATCCGCACGAGTACTGTAGCCCAAAATGCTACATCATAAAAAAAACTCGAACATGCTTCTCTTCCATTTTTAATCGTTTGGTTTCCTGCTGTGTTGCGAATTANAAAAAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGGAGTCAGCTCTAGAGCTCTATGACGTTTTTTTTGAMACAGAAACCCCCAGAAACATGGAGCAATTGGAATGAAAAAATGGGAGGAAAGAAGTGGAATTGAATTCATATTCAACCAAGTGACAAGAAATTAAATGAAAACGGGTCGGATGAGTATATTTGACATTTTTGATGAATAACTGAACGGAAATTGGAAAACGGACGAAAAATATGGTAGACAGAAAAAAGGAAATTGAGTTTATATAGTGGAAAAATGCAAGAAAAGGGCATTCAAAGGATATGTACATTATGATATGATCAGTCAAGGAATACAAGTGATTCTGAAAATCAAAATTAATGGTGTCATTTCATTTTTTAGTCAACTTACAACTAAAAATACCAAAAACCACAGTGTTTACTTTGATGAGGTCAGAAGTAACGAGATAAATCAGAATCGTCATTTTGGGGGTTTCAAGGAAGTCTGTATTTTACAATTTCAGCCCCAGATCTTGTAAAACCTATAATAGAATGAGCCCTTTATCTTTTAACTTTGAACCAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTCTTCCATTTTTAATCGT</pcr_primer_p1>
		<pcr_primer_p2>ATTTCTTGTCACTTGGTTGAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCTCTTCCATTTTTAATCGTTTGGTTTCCTGCTGTGTTGCGAATTANAAAAAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGGAGTCAGCTCTAGAGCTCTATGACGTTTTTTTTGAAACAGAAACCCCCAGAAACATGGAGCAATTGGAATGAAAAAATGGGAGGAAAGAAGTGGAATTGAATTCATATTCAACCAAGTGACAAGAAAT</canonical_amplicon>
		<polymorphic_amplicon>CTTCTCTTCCATTTTTAATCGTTTGGTTTCCTGCTGTGTTGCGAATTANAAAAAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGGAGTCAGCTCTAGAGCTCTATGACGTTTTTTTTGAMACAGAAACCCCCAGAAACATGGAGCAATTGGAATGAAAAAATGGGAGGAAAGAAGTGGAATTGAATTCATATTCAACCAAGTGACAAGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12089</snp_id>
        <super_contig>c006201094.Contig1</super_contig>
        <contig_pos>59966</contig_pos>
        <strand></strand>
        <context>GMTTTTTTTG[A/C]MACAGAAACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAGAGAGAGAGAAAAGGAGTCAGCTCTAGAGCTCTATGACGTTTTTTTTG</left_flank>
        <right_flank>AACAGAAACCCCCAGAAACATGGAGCAATTGGAATGAAAAAATGGGAGGA</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTACAAGATCTCATGAGATGAAAAAGAAAAAAGAAACATCTGCTCGGAGAGAGGCTTGTCCAGGACTGGCCTCAGGGGTTGTGCTGGCTCTTTTGGCTGGAATGGAAAAGAAAAAAACCGAGAAGGCATAGAAGGAATGGCGGCTGAAAATGAGGATGTGGGCAGAAGAAGAAGAAGAGGAATGGAACCGGAAGTACAAGGAAGATTACTGTGGATCCTCATTATGAATTTTAATTGCTCATGCAAATAGAAATCAAAGTTTTTTAGGTCTGAAATTCTAAACAGGGATCCGCACGAGTACTGTAGCCCAAAATGCTACATCATAAAAAAAACTCGAACATGCTTCTCTTCCATTTTTAATCGTTTGGTTTCCTGCTGTGTTGCGAATTANAAAAAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGGAGTCAGCTCTAGAGCTCTATGACGTTTTTTTTGAAACAGAAACCCCCAGAAACATGGAGCAATTGGAATGAAAAAATGGGAGGAAAGAAGTGGAATTGAATTCATATTCAACCAAGTGACAAGAAATTAAATGAAAACGGGTCGGATGAGTATATTTGACATTTTTGATGAATAACTGAACGGAAATTGGAAAACGGACGAAAAATATGGTAGACAGAAAAAAGGAAATTGAGTTTATATAGTGGAAAAATGCAAGAAAAGGGCATTCAAAGGATATGTACATTATGATATGATCAGTCAAGGAATACAAGTGATTCTGAAAATCAAAATTAATGGTGTCATTTCATTTTTTAGTCAACTTACAACTAAAAATACCAAAAACCACAGTGTTTACTTTGATGAGGTCAGAAGTAACGAGATAAATCAGAATCGTCATTTTGGGGGTTTCAAGGAAGTCTGTATTTTACAATTTCAGCCCCAGATCTTGTAAAACCTATAATAGAATGAGCCCTTTATCTTTTAACTTTGAACCAG</canonical>
            <polymorphic>AGTACAAGATCTCATGAGATGAAAAAGAAAAAAGAAACATCTGCTCGGAGAGAGGCTTGTCCAGGACTGGCCTCAGGGGTTGTGCTGGCTCTTTTGGCTGGAATGGAAAAGAAAAAAACCGAGAAGGCATAGAAGGAATGGCGGCTGAAAATGAGGATGTGGGCAGAAGAAGAAGAAGAGGAATGGAACCGGAAGTACAAGGAAGATTACTGTGGATCCTCATTATGAATTTTAATTGCTCATGCAAATAGAAATCAAAGTTTTTTAGGTCTGAAATTCTAAACAGGGATCCGCACGAGTACTGTAGCCCAAAATGCTACATCATAAAAAAAACTCGAACATGCTTCTCTTCCATTTTTAATCGTTTGGTTTCCTGCTGTGTTGCGAATTANAAAAAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGGAGTCAGCTCTAGAGCTCTATGACGTTTTTTTTGMAACAGAAACCCCCAGAAACATGGAGCAATTGGAATGAAAAAATGGGAGGAAAGAAGTGGAATTGAATTCATATTCAACCAAGTGACAAGAAATTAAATGAAAACGGGTCGGATGAGTATATTTGACATTTTTGATGAATAACTGAACGGAAATTGGAAAACGGACGAAAAATATGGTAGACAGAAAAAAGGAAATTGAGTTTATATAGTGGAAAAATGCAAGAAAAGGGCATTCAAAGGATATGTACATTATGATATGATCAGTCAAGGAATACAAGTGATTCTGAAAATCAAAATTAATGGTGTCATTTCATTTTTTAGTCAACTTACAACTAAAAATACCAAAAACCACAGTGTTTACTTTGATGAGGTCAGAAGTAACGAGATAAATCAGAATCGTCATTTTGGGGGTTTCAAGGAAGTCTGTATTTTACAATTTCAGCCCCAGATCTTGTAAAACCTATAATAGAATGAGCCCTTTATCTTTTAACTTTGAACCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTCTTCCATTTTTAATCGT</pcr_primer_p1>
		<pcr_primer_p2>ATTTCTTGTCACTTGGTTGAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCTCTTCCATTTTTAATCGTTTGGTTTCCTGCTGTGTTGCGAATTANAAAAAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGGAGTCAGCTCTAGAGCTCTATGACGTTTTTTTTGAAACAGAAACCCCCAGAAACATGGAGCAATTGGAATGAAAAAATGGGAGGAAAGAAGTGGAATTGAATTCATATTCAACCAAGTGACAAGAAAT</canonical_amplicon>
		<polymorphic_amplicon>CTTCTCTTCCATTTTTAATCGTTTGGTTTCCTGCTGTGTTGCGAATTANAAAAAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGGAGTCAGCTCTAGAGCTCTATGACGTTTTTTTTGMAACAGAAACCCCCAGAAACATGGAGCAATTGGAATGAAAAAATGGGAGGAAAGAAGTGGAATTGAATTCATATTCAACCAAGTGACAAGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12090</snp_id>
        <super_contig>c006201094.Contig1</super_contig>
        <contig_pos>82453</contig_pos>
        <strand>+</strand>
        <context>TTTTTAAGTT[C/T]TTTGATTTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACTTAAAACCTTCGATTGTATTAATTCTGGATTAGCTTTTTTTAAGTT</left_flank>
        <right_flank>TTTGATTTGATTAAAAATTATTTGTTTTTTCTAAATTTTGTTTTCCTCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAACTTTATGAGTAAACTGGCTAAGTTTCAAATCATTGTATCAACTTTGAGCTGAGTTATCGATAGTCAAAGTTGCTAAATCTCATGAAACTCGTATAAGATACTTTCATCATTGGACAATCATAACAATACAGAGACTTGAGGAATTGCTTTGAAAATTTCAGTAGATTTGACTTGAAAGTAATATTATATTTCTATCAATTTTCATGCTTCTAAGACACTTAGGTCTAAAGATATATCCGTTTTTATCAGTCCGGGTATGCCACCCTTTACATAAACCACTTCCAGGCTTCTTCAAACTCGGCAATTACAGTACCCTAAAAAGTGTTTATCTAATTTTCATTTTTCCCAGAGATGTTTTTCCCATCGAAGAGGATCCCCTATTTCTTTATTATGATGGCTTGCACTCATGTGCGAACGGACCTCCTCTTTGTTTTTTTAAAGAAAAAACTTAAAACCTTCGATTGTATTAATTCTGGATTAGCTTTTTTTAAGTTCTTTGATTTGATTAAAAATTATTTGTTTTTTCTAAATTTTGTTTTCCTCCTGGAAAGAAGTATTGCTAGGCGCATGTGGAATAGACGGATCTAACTCATGGGTGTTAATTGTGACAATGTGAAGAGGTTCATCTAGTTAGTTCTGGTTACTGTGTCTCTCTGAGAAGACTCCGCCCACTCTGGCTAACTATGCGGGAGTTTAGTTAGGTTATGCGAAAGTCCCGCCTATTGAGATCTCGACGGTCCAACTCATTTTTTGCTTTCATTCAGTTAGATCACCTCGGTTGCTCTAGGACTACAATCTTCCTTTTAAAATGCATCTATTGATTTATTCTTGAATTTCTAGGATTCCTTCTTCTTATAGGATTCATAGTTCGTCCCAACTCACTCTTTTGTACGCGCTCCTTACCCCCGCTTCCTTTTCTTTACGCTCCTTTTTTCCCTTCTTCTTCTTCTTCTTCTTTCCACTGGCGCCGCTCGCTTTCCTTTTCCATCCTACGT</canonical>
            <polymorphic>ATAAACTTTATGAGTAAACTGGCTAAGTTTCAAATCATTGTATCAACTTTGAGCTGAGTTATCGATAGTCAAAGTTGCTAAATCTCATGAAACTCGTATAAGATACTTTCATCATTGGACAATCATAACAATACAGAGACTTGAGGAATTGCTTTGAAAATTTCAGTAGATTTGACTTGAAAGTAATATTATATTTCTATCAATTTTCATGCTTCTAAGACACTTAGGTCTAAAGATATATCCGTTTTTATCAGTCCGGGTATGCCACCCTTTACATAAACCACTTCCAGGCTTCTTCAAACTCGGCAATTACAGTACCCTAAAAAGTGTTTATCTAATTTTCATTTTTCCCAGAGATGTTTTTCCCATCGAAGAGGATCCCCTATTTCTTTATTATGATGGCTTGCACTCATGTGCGAACGGACCTCCTCTTTGTTTTTTTAAAGAAAAAACTTAAAACCTTCGATTGTATTAATTCTGGATTAGCTTTTTTTAAGTTYTTTGATTTGATTAAAAATTATTTGTTTTTTCTAAATTTTGTTTTCCTCCTGGAAAGAAGTATTGCTAGGCGCATGTGGAATAGACGGATCTAACTCATGGGTGTTAATTGTGACAATGTGAAGAGGTTCATCTAGTTAGTTCTGGTTACTGTGTCTCTCTGAGAAGACTCCGCCCACTCTGGCTAACTATGCGGGAGTTTAGTTAGGTTATGCGAAAGTCCCGCCTATTGAGATCTCGACGGTCCAACTCATTTTTTGCTTTCATTCAGTTAGATCACCTCGGTTGCTCTAGGACTACAATCTTCCTTTTAAAATGCATCTATTGATTTATTCTTGAATTTCTAGGATTCCTTCTTCTTATAGGATTCATAGTTCGTCCCAACTCACTCTTTTGTACGCGCTCCTTACCCCCGCTTCCTTTTCTTTACGCTCCTTTTTTCCCTTCTTCTTCTTCTTCTTCTTTCCACTGGCGCCGCTCGCTTTCCTTTTCCATCCTACGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTATTATGATGGCTTGCACT</pcr_primer_p1>
		<pcr_primer_p2>ACTAGATGAACCTCTTCACATTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTTTATTATGATGGCTTGCACTCATGTGCGAACGGACCTCCTCTTTGTTTTTTTAAAGAAAAAACTTAAAACCTTCGATTGTATTAATTCTGGATTAGCTTTTTTTAAGTTCTTTGATTTGATTAAAAATTATTTGTTTTTTCTAAATTTTGTTTTCCTCCTGGAAAGAAGTATTGCTAGGCGCATGTGGAATAGACGGATCTAACTCATGGGTGTTAATTGTGACAATGTGAAGAGGTTCATCTAGT</canonical_amplicon>
		<polymorphic_amplicon>CTTTATTATGATGGCTTGCACTCATGTGCGAACGGACCTCCTCTTTGTTTTTTTAAAGAAAAAACTTAAAACCTTCGATTGTATTAATTCTGGATTAGCTTTTTTTAAGTTYTTTGATTTGATTAAAAATTATTTGTTTTTTCTAAATTTTGTTTTCCTCCTGGAAAGAAGTATTGCTAGGCGCATGTGGAATAGACGGATCTAACTCATGGGTGTTAATTGTGACAATGTGAAGAGGTTCATCTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12091</snp_id>
        <super_contig>c006201094.Contig1</super_contig>
        <contig_pos>82506</contig_pos>
        <strand>+</strand>
        <context>TTCCTCCTGG[A/G]AAGAAGTATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATTTGATTAAAAATTATTTGTTTTTTCTAAATTTTGTTTTCCTCCTGG</left_flank>
        <right_flank>AAGAAGTATTGCTAGGCGCATGTGGAATAGACGGATCTAACTCATGGGTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAGTTATCGATAGTCAAAGTTGCTAAATCTCATGAAACTCGTATAAGATACTTTCATCATTGGACAATCATAACAATACAGAGACTTGAGGAATTGCTTTGAAAATTTCAGTAGATTTGACTTGAAAGTAATATTATATTTCTATCAATTTTCATGCTTCTAAGACACTTAGGTCTAAAGATATATCCGTTTTTATCAGTCCGGGTATGCCACCCTTTACATAAACCACTTCCAGGCTTCTTCAAACTCGGCAATTACAGTACCCTAAAAAGTGTTTATCTAATTTTCATTTTTCCCAGAGATGTTTTTCCCATCGAAGAGGATCCCCTATTTCTTTATTATGATGGCTTGCACTCATGTGCGAACGGACCTCCTCTTTGTTTTTTTAAAGAAAAAACTTAAAACCTTCGATTGTATTAATTCTGGATTAGCTTTTTTTAAGTTCTTTGATTTGATTAAAAATTATTTGTTTTTTCTAAATTTTGTTTTCCTCCTGGAAAGAAGTATTGCTAGGCGCATGTGGAATAGACGGATCTAACTCATGGGTGTTAATTGTGACAATGTGAAGAGGTTCATCTAGTTAGTTCTGGTTACTGTGTCTCTCTGAGAAGACTCCGCCCACTCTGGCTAACTATGCGGGAGTTTAGTTAGGTTATGCGAAAGTCCCGCCTATTGAGATCTCGACGGTCCAACTCATTTTTTGCTTTCATTCAGTTAGATCACCTCGGTTGCTCTAGGACTACAATCTTCCTTTTAAAATGCATCTATTGATTTATTCTTGAATTTCTAGGATTCCTTCTTCTTATAGGATTCATAGTTCGTCCCAACTCACTCTTTTGTACGCGCTCCTTACCCCCGCTTCCTTTTCTTTACGCTCCTTTTTTCCCTTCTTCTTCTTCTTCTTCTTTCCACTGGCGCCGCTCGCTTTCCTTTTCCATCCTACGTCTCTTTTCTGCTCTGTCTCATAAGTACTTCAATGTCCAATTGATTTCGAAGCC</canonical>
            <polymorphic>CTGAGTTATCGATAGTCAAAGTTGCTAAATCTCATGAAACTCGTATAAGATACTTTCATCATTGGACAATCATAACAATACAGAGACTTGAGGAATTGCTTTGAAAATTTCAGTAGATTTGACTTGAAAGTAATATTATATTTCTATCAATTTTCATGCTTCTAAGACACTTAGGTCTAAAGATATATCCGTTTTTATCAGTCCGGGTATGCCACCCTTTACATAAACCACTTCCAGGCTTCTTCAAACTCGGCAATTACAGTACCCTAAAAAGTGTTTATCTAATTTTCATTTTTCCCAGAGATGTTTTTCCCATCGAAGAGGATCCCCTATTTCTTTATTATGATGGCTTGCACTCATGTGCGAACGGACCTCCTCTTTGTTTTTTTAAAGAAAAAACTTAAAACCTTCGATTGTATTAATTCTGGATTAGCTTTTTTTAAGTTCTTTGATTTGATTAAAAATTATTTGTTTTTTCTAAATTTTGTTTTCCTCCTGGRAAGAAGTATTGCTAGGCGCATGTGGAATAGACGGATCTAACTCATGGGTGTTAATTGTGACAATGTGAAGAGGTTCATCTAGTTAGTTCTGGTTACTGTGTCTCTCTGAGAAGACTCCGCCCACTCTGGCTAACTATGCGGGAGTTTAGTTAGGTTATGCGAAAGTCCCGCCTATTGAGATCTCGACGGTCCAACTCATTTTTTGCTTTCATTCAGTTAGATCACCTCGGTTGCTCTAGGACTACAATCTTCCTTTTAAAATGCATCTATTGATTTATTCTTGAATTTCTAGGATTCCTTCTTCTTATAGGATTCATAGTTCGTCCCAACTCACTCTTTTGTACGCGCTCCTTACCCCCGCTTCCTTTTCTTTACGCTCCTTTTTTCCCTTCTTCTTCTTCTTCTTCTTTCCACTGGCGCCGCTCGCTTTCCTTTTCCATCCTACGTCTCTTTTCTGCTCTGTCTCATAAGTACTTCAATGTCCAATTGATTTCGAAGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACCTTCGATTGTATTAATTCTG</pcr_primer_p1>
		<pcr_primer_p2>TAACTAAACTCCCGCATAGTTAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AACCTTCGATTGTATTAATTCTGGATTAGCTTTTTTTAAGTTCTTTGATTTGATTAAAAATTATTTGTTTTTTCTAAATTTTGTTTTCCTCCTGGAAAGAAGTATTGCTAGGCGCATGTGGAATAGACGGATCTAACTCATGGGTGTTAATTGTGACAATGTGAAGAGGTTCATCTAGTTAGTTCTGGTTACTGTGTCTCTCTGAGAAGACTCCGCCCACTCTGGCTAACTATGCGGGAGTTTAGTTA</canonical_amplicon>
		<polymorphic_amplicon>AACCTTCGATTGTATTAATTCTGGATTAGCTTTTTTTAAGTTCTTTGATTTGATTAAAAATTATTTGTTTTTTCTAAATTTTGTTTTCCTCCTGGRAAGAAGTATTGCTAGGCGCATGTGGAATAGACGGATCTAACTCATGGGTGTTAATTGTGACAATGTGAAGAGGTTCATCTAGTTAGTTCTGGTTACTGTGTCTCTCTGAGAAGACTCCGCCCACTCTGGCTAACTATGCGGGAGTTTAGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12092</snp_id>
        <super_contig>c006201094.Contig1</super_contig>
        <contig_pos>213913</contig_pos>
        <strand>+</strand>
        <context>TCCTTTTCAA[A/G]ATCTTACAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTCATCGGTGGAAAAAGCAGTGGAAGCGATGAATGTGTCCTTTTCAA</left_flank>
        <right_flank>ATCTTACAGGTACAGAAACAAATTTAAGCCATTTTTTTATTGAGTTAAAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAAAGCTAGAAGGTAGAATTGTAATTGGGAAATGGATATTGAAAAAAAGAAGCTTTCAGACAATATCAGCTATCACAAGTTCCGACGTTAGAAGACACAGATCCATTGCTTCGGAATTTTACCGACTTGAAAGAAGTTCTGAATGAGGTACTGTAAAATAGTCCAGAAATAAGTTTATTTTGCTATTGACACATCTAAATACTATACTAAAACTATAGAAGCATTTTGTATCAGGAGAATTTACAGGTAGCTGATCTTGCTGATATGAATCCACAAACATACCTATCTCCGTTCCTGGATGTGATCAAAGCCCAGAACACCAATGGACCGATAACAGAAGCTGCATTGGCTGCAGTTGCAAAATTCCTTAACTATGGACTCATCGATGCCAGTAGTATCAAGGCGGCGAATGCAGTGGAGTCGATTGCCTATGCTGTCGTTCATACTAAATTCATCGGTGGAAAAAGCAGTGGAAGCGATGAATGTGTCCTTTTCAAGATCTTACAGGTACAGAAACAAATTTAAGCCATTTTTTTATTGAGTTAAAAAATATTGAAAATCGAATTTCAGGTGCTCCGTTCGCTTCTCCTCTCACCACCAGGAATCTTATTGTCCAATGAAGCAGTTTGTGACATGATGCAGTCGTGTTTCAGAATAGTTTTCGAACAAAATCTATCCTTGCTGTTAAGAAAAGTAAGTCTTGAAATTTTGTTTCTGCTCAATATATAAAATTTGTTTTTCAGGCAGCTGAATCAACTCTTGCTGACATGACTCAACTGATTTTCACTAGACTTCCGACTTTTGTAGAAGACACACGTCATCCGTATATTCGGCAACTGGTACGGTAACAAGAGCTGTATTTTTTTCCAAAGTTAAAAATTTCAGGTAAATCCTTCTGAGAAACGCCAGAAACGCAAGAAGAAGCGACAATCATCTACTCACATCGAACACAAGGAGAAGAAAGATGATGAAACGGAAAGTAATGCAACAGAGTCAAC</canonical>
            <polymorphic>AACAAAGCTAGAAGGTAGAATTGTAATTGGGAAATGGATATTGAAAAAAAGAAGCTTTCAGACAATATCAGCTATCACAAGTTCCGACGTTAGAAGACACAGATCCATTGCTTCGGAATTTTACCGACTTGAAAGAAGTTCTGAATGAGGTACTGTAAAATAGTCCAGAAATAAGTTTATTTTGCTATTGACACATCTAAATACTATACTAAAACTATAGAAGCATTTTGTATCAGGAGAATTTACAGGTAGCTGATCTTGCTGATATGAATCCACAAACATACCTATCTCCGTTCCTGGATGTGATCAAAGCCCAGAACACCAATGGACCGATAACAGAAGCTGCATTGGCTGCAGTTGCAAAATTCCTTAACTATGGACTCATCGATGCCAGTAGTATCAAGGCGGCGAATGCAGTGGAGTCGATTGCCTATGCTGTCGTTCATACTAAATTCATCGGTGGAAAAAGCAGTGGAAGCGATGAATGTGTCCTTTTCAARATCTTACAGGTACAGAAACAAATTTAAGCCATTTTTTTATTGAGTTAAAAAATATTGAAAATCGAATTTCAGGTGCTCCGTTCGCTTCTCCTCTCACCACCAGGAATCTTATTGTCCAATGAAGCAGTTTGTGACATGATGCAGTCGTGTTTCAGAATAGTTTTCGAACAAAATCTATCCTTGCTGTTAAGAAAAGTAAGTCTTGAAATTTTGTTTCTGCTCAATATATAAAATTTGTTTTTCAGGCAGCTGAATCAACTCTTGCTGACATGACTCAACTGATTTTCACTAGACTTCCGACTTTTGTAGAAGACACACGTCATCCGTATATTCGGCAACTGGTACGGTAACAAGAGCTGTATTTTTTTCCAAAGTTAAAAATTTCAGGTAAATCCTTCTGAGAAACGCCAGAAACGCAAGAAGAAGCGACAATCATCTACTCACATCGAACACAAGGAGAAGAAAGATGATGAAACGGAAAGTAATGCAACAGAGTCAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>501 195 153 101 50</canonical_bands>
                <polymorphic_bands>696 153 101 50</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>501 398 101</canonical_bands>
                <polymorphic_bands>899 101</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>298 263 205 165 69</canonical_bands>
                <polymorphic_bands>468 298 165 69</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTGTCGTTCATACTAAATTCAT</pcr_primer_p1>
		<pcr_primer_p2>ACAGCAAGGATAGATTTTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GCTGTCGTTCATACTAAATTCATCGGTGGAAAAAGCAGTGGAAGCGATGAATGTGTCCTTTTCAAGATCTTACAGGTACAGAAACAAATTTAAGCCATTTTTTTATTGAGTTAAAAAATATTGAAAATCGAATTTCAGGTGCTCCGTTCGCTTCTCCTCTCACCACCAGGAATCTTATTGTCCAATGAAGCAGTTTGTGACATGATGCAGTCGTGTTTCAGAATAGTTTTCGAACAAAATCTATCCTTGCTGT</canonical_amplicon>
		<polymorphic_amplicon>GCTGTCGTTCATACTAAATTCATCGGTGGAAAAAGCAGTGGAAGCGATGAATGTGTCCTTTTCAARATCTTACAGGTACAGAAACAAATTTAAGCCATTTTTTTATTGAGTTAAAAAATATTGAAAATCGAATTTCAGGTGCTCCGTTCGCTTCTCCTCTCACCACCAGGAATCTTATTGTCCAATGAAGCAGTTTGTGACATGATGCAGTCGTGTTTCAGAATAGTTTTCGAACAAAATCTATCCTTGCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12093</snp_id>
        <super_contig>c006201094.Contig1</super_contig>
        <contig_pos>213940</contig_pos>
        <strand>+</strand>
        <context>AACAAATTTA[A/G]GCCATTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCGATGAATGTGTCCTTTTCAAGATCTTACAGGTACAGAAACAAATTTA</left_flank>
        <right_flank>GCCATTTTTTTATTGAGTTAAAAAATATTGAAAATCGAATTTCAGGTGCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGGAAATGGATATTGAAAAAAAGAAGCTTTCAGACAATATCAGCTATCACAAGTTCCGACGTTAGAAGACACAGATCCATTGCTTCGGAATTTTACCGACTTGAAAGAAGTTCTGAATGAGGTACTGTAAAATAGTCCAGAAATAAGTTTATTTTGCTATTGACACATCTAAATACTATACTAAAACTATAGAAGCATTTTGTATCAGGAGAATTTACAGGTAGCTGATCTTGCTGATATGAATCCACAAACATACCTATCTCCGTTCCTGGATGTGATCAAAGCCCAGAACACCAATGGACCGATAACAGAAGCTGCATTGGCTGCAGTTGCAAAATTCCTTAACTATGGACTCATCGATGCCAGTAGTATCAAGGCGGCGAATGCAGTGGAGTCGATTGCCTATGCTGTCGTTCATACTAAATTCATCGGTGGAAAAAGCAGTGGAAGCGATGAATGTGTCCTTTTCAAGATCTTACAGGTACAGAAACAAATTTAAGCCATTTTTTTATTGAGTTAAAAAATATTGAAAATCGAATTTCAGGTGCTCCGTTCGCTTCTCCTCTCACCACCAGGAATCTTATTGTCCAATGAAGCAGTTTGTGACATGATGCAGTCGTGTTTCAGAATAGTTTTCGAACAAAATCTATCCTTGCTGTTAAGAAAAGTAAGTCTTGAAATTTTGTTTCTGCTCAATATATAAAATTTGTTTTTCAGGCAGCTGAATCAACTCTTGCTGACATGACTCAACTGATTTTCACTAGACTTCCGACTTTTGTAGAAGACACACGTCATCCGTATATTCGGCAACTGGTACGGTAACAAGAGCTGTATTTTTTTCCAAAGTTAAAAATTTCAGGTAAATCCTTCTGAGAAACGCCAGAAACGCAAGAAGAAGCGACAATCATCTACTCACATCGAACACAAGGAGAAGAAAGATGATGAAACGGAAAGTAATGCAACAGAGTCAACGAAACTGATTACTGCGACTTCTGAACC</canonical>
            <polymorphic>TGGGAAATGGATATTGAAAAAAAGAAGCTTTCAGACAATATCAGCTATCACAAGTTCCGACGTTAGAAGACACAGATCCATTGCTTCGGAATTTTACCGACTTGAAAGAAGTTCTGAATGAGGTACTGTAAAATAGTCCAGAAATAAGTTTATTTTGCTATTGACACATCTAAATACTATACTAAAACTATAGAAGCATTTTGTATCAGGAGAATTTACAGGTAGCTGATCTTGCTGATATGAATCCACAAACATACCTATCTCCGTTCCTGGATGTGATCAAAGCCCAGAACACCAATGGACCGATAACAGAAGCTGCATTGGCTGCAGTTGCAAAATTCCTTAACTATGGACTCATCGATGCCAGTAGTATCAAGGCGGCGAATGCAGTGGAGTCGATTGCCTATGCTGTCGTTCATACTAAATTCATCGGTGGAAAAAGCAGTGGAAGCGATGAATGTGTCCTTTTCAAGATCTTACAGGTACAGAAACAAATTTARGCCATTTTTTTATTGAGTTAAAAAATATTGAAAATCGAATTTCAGGTGCTCCGTTCGCTTCTCCTCTCACCACCAGGAATCTTATTGTCCAATGAAGCAGTTTGTGACATGATGCAGTCGTGTTTCAGAATAGTTTTCGAACAAAATCTATCCTTGCTGTTAAGAAAAGTAAGTCTTGAAATTTTGTTTCTGCTCAATATATAAAATTTGTTTTTCAGGCAGCTGAATCAACTCTTGCTGACATGACTCAACTGATTTTCACTAGACTTCCGACTTTTGTAGAAGACACACGTCATCCGTATATTCGGCAACTGGTACGGTAACAAGAGCTGTATTTTTTTCCAAAGTTAAAAATTTCAGGTAAATCCTTCTGAGAAACGCCAGAAACGCAAGAAGAAGCGACAATCATCTACTCACATCGAACACAAGGAGAAGAAAGATGATGAAACGGAAAGTAATGCAACAGAGTCAACGAAACTGATTACTGCGACTTCTGAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>221 181 177 171 107 60 30 27 17 9</canonical_bands>
                <polymorphic_bands>398 181 171 107 60 30 27 17 9</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>343 188 154 152 142 21</canonical_bands>
                <polymorphic_bands>343 188 175 152 142</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTGTCGTTCATACTAAATTCAT</pcr_primer_p1>
		<pcr_primer_p2>ACAGCAAGGATAGATTTTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GCTGTCGTTCATACTAAATTCATCGGTGGAAAAAGCAGTGGAAGCGATGAATGTGTCCTTTTCAAGATCTTACAGGTACAGAAACAAATTTAAGCCATTTTTTTATTGAGTTAAAAAATATTGAAAATCGAATTTCAGGTGCTCCGTTCGCTTCTCCTCTCACCACCAGGAATCTTATTGTCCAATGAAGCAGTTTGTGACATGATGCAGTCGTGTTTCAGAATAGTTTTCGAACAAAATCTATCCTTGCTGT</canonical_amplicon>
		<polymorphic_amplicon>GCTGTCGTTCATACTAAATTCATCGGTGGAAAAAGCAGTGGAAGCGATGAATGTGTCCTTTTCAAGATCTTACAGGTACAGAAACAAATTTARGCCATTTTTTTATTGAGTTAAAAAATATTGAAAATCGAATTTCAGGTGCTCCGTTCGCTTCTCCTCTCACCACCAGGAATCTTATTGTCCAATGAAGCAGTTTGTGACATGATGCAGTCGTGTTTCAGAATAGTTTTCGAACAAAATCTATCCTTGCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12094</snp_id>
        <super_contig>c006201094.Contig1</super_contig>
        <contig_pos>214078</contig_pos>
        <strand>+</strand>
        <context>GAATAGTTTT[C/T]GAACAAAATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCAATGAAGCAGTTTGTGACATGATGCAGTCGTGTTTCAGAATAGTTTT</left_flank>
        <right_flank>GAACAAAATCTATCCTTGCTGTTAAGAAAAGTAAGTCTTGAAATTTTGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAAATAAGTTTATTTTGCTATTGACACATCTAAATACTATACTAAAACTATAGAAGCATTTTGTATCAGGAGAATTTACAGGTAGCTGATCTTGCTGATATGAATCCACAAACATACCTATCTCCGTTCCTGGATGTGATCAAAGCCCAGAACACCAATGGACCGATAACAGAAGCTGCATTGGCTGCAGTTGCAAAATTCCTTAACTATGGACTCATCGATGCCAGTAGTATCAAGGCGGCGAATGCAGTGGAGTCGATTGCCTATGCTGTCGTTCATACTAAATTCATCGGTGGAAAAAGCAGTGGAAGCGATGAATGTGTCCTTTTCAAGATCTTACAGGTACAGAAACAAATTTAAGCCATTTTTTTATTGAGTTAAAAAATATTGAAAATCGAATTTCAGGTGCTCCGTTCGCTTCTCCTCTCACCACCAGGAATCTTATTGTCCAATGAAGCAGTTTGTGACATGATGCAGTCGTGTTTCAGAATAGTTTTCGAACAAAATCTATCCTTGCTGTTAAGAAAAGTAAGTCTTGAAATTTTGTTTCTGCTCAATATATAAAATTTGTTTTTCAGGCAGCTGAATCAACTCTTGCTGACATGACTCAACTGATTTTCACTAGACTTCCGACTTTTGTAGAAGACACACGTCATCCGTATATTCGGCAACTGGTACGGTAACAAGAGCTGTATTTTTTTCCAAAGTTAAAAATTTCAGGTAAATCCTTCTGAGAAACGCCAGAAACGCAAGAAGAAGCGACAATCATCTACTCACATCGAACACAAGGAGAAGAAAGATGATGAAACGGAAAGTAATGCAACAGAGTCAACGAAACTGATTACTGCGACTTCTGAACCAGAAATTGACGGAGCAGCTACACTTGGTAAGTTTTCTTTTTTTCAAATTTTCGAATTGAATTCAAAAGATACAGGATACGATGTGGTCTTGACTACTGATCCCCCTGTCGATGCTGTAACTCATCCAGATCGAAACGT</canonical>
            <polymorphic>CAGAAATAAGTTTATTTTGCTATTGACACATCTAAATACTATACTAAAACTATAGAAGCATTTTGTATCAGGAGAATTTACAGGTAGCTGATCTTGCTGATATGAATCCACAAACATACCTATCTCCGTTCCTGGATGTGATCAAAGCCCAGAACACCAATGGACCGATAACAGAAGCTGCATTGGCTGCAGTTGCAAAATTCCTTAACTATGGACTCATCGATGCCAGTAGTATCAAGGCGGCGAATGCAGTGGAGTCGATTGCCTATGCTGTCGTTCATACTAAATTCATCGGTGGAAAAAGCAGTGGAAGCGATGAATGTGTCCTTTTCAAGATCTTACAGGTACAGAAACAAATTTAAGCCATTTTTTTATTGAGTTAAAAAATATTGAAAATCGAATTTCAGGTGCTCCGTTCGCTTCTCCTCTCACCACCAGGAATCTTATTGTCCAATGAAGCAGTTTGTGACATGATGCAGTCGTGTTTCAGAATAGTTTTYGAACAAAATCTATCCTTGCTGTTAAGAAAAGTAAGTCTTGAAATTTTGTTTCTGCTCAATATATAAAATTTGTTTTTCAGGCAGCTGAATCAACTCTTGCTGACATGACTCAACTGATTTTCACTAGACTTCCGACTTTTGTAGAAGACACACGTCATCCGTATATTCGGCAACTGGTACGGTAACAAGAGCTGTATTTTTTTCCAAAGTTAAAAATTTCAGGTAAATCCTTCTGAGAAACGCCAGAAACGCAAGAAGAAGCGACAATCATCTACTCACATCGAACACAAGGAGAAGAAAGATGATGAAACGGAAAGTAATGCAACAGAGTCAACGAAACTGATTACTGCGACTTCTGAACCAGAAATTGACGGAGCAGCTACACTTGGTAAGTTTTCTTTTTTTCAAATTTTCGAATTGAATTCAAAAGATACAGGATACGATGTGGTCTTGACTACTGATCCCCCTGTCGATGCTGTAACTCATCCAGATCGAAACGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>499 414 87</canonical_bands>
                <polymorphic_bands>913 87</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>282 221 139 132 102 57 38 22 7</canonical_bands>
                <polymorphic_bands>384 221 139 132 57 38 22 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTATTGTCCAATGAAGCAGTT</pcr_primer_p1>
		<pcr_primer_p2>CTCTTGTTACCGTACCAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTATTGTCCAATGAAGCAGTTTGTGACATGATGCAGTCGTGTTTCAGAATAGTTTTCGAACAAAATCTATCCTTGCTGTTAAGAAAAGTAAGTCTTGAAATTTTGTTTCTGCTCAATATATAAAATTTGTTTTTCAGGCAGCTGAATCAACTCTTGCTGACATGACTCAACTGATTTTCACTAGACTTCCGACTTTTGTAGAAGACACACGTCATCCGTATATTCGGCAACTGGTACGGTAACAAGAG</canonical_amplicon>
		<polymorphic_amplicon>CTTATTGTCCAATGAAGCAGTTTGTGACATGATGCAGTCGTGTTTCAGAATAGTTTTYGAACAAAATCTATCCTTGCTGTTAAGAAAAGTAAGTCTTGAAATTTTGTTTCTGCTCAATATATAAAATTTGTTTTTCAGGCAGCTGAATCAACTCTTGCTGACATGACTCAACTGATTTTCACTAGACTTCCGACTTTTGTAGAAGACACACGTCATCCGTATATTCGGCAACTGGTACGGTAACAAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12095</snp_id>
        <super_contig>c006201094.Contig1</super_contig>
        <contig_pos>214145</contig_pos>
        <strand>+</strand>
        <context>CAATATATAA[A/C]ATTTGTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCTGTTAAGAAAAGTAAGTCTTGAAATTTTGTTTCTGCTCAATATATAA</left_flank>
        <right_flank>ATTTGTTTTTCAGGCAGCTGAATCAACTCTTGCTGACATGACTCAACTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGGAGAATTTACAGGTAGCTGATCTTGCTGATATGAATCCACAAACATACCTATCTCCGTTCCTGGATGTGATCAAAGCCCAGAACACCAATGGACCGATAACAGAAGCTGCATTGGCTGCAGTTGCAAAATTCCTTAACTATGGACTCATCGATGCCAGTAGTATCAAGGCGGCGAATGCAGTGGAGTCGATTGCCTATGCTGTCGTTCATACTAAATTCATCGGTGGAAAAAGCAGTGGAAGCGATGAATGTGTCCTTTTCAAGATCTTACAGGTACAGAAACAAATTTAAGCCATTTTTTTATTGAGTTAAAAAATATTGAAAATCGAATTTCAGGTGCTCCGTTCGCTTCTCCTCTCACCACCAGGAATCTTATTGTCCAATGAAGCAGTTTGTGACATGATGCAGTCGTGTTTCAGAATAGTTTTCGAACAAAATCTATCCTTGCTGTTAAGAAAAGTAAGTCTTGAAATTTTGTTTCTGCTCAATATATAAAATTTGTTTTTCAGGCAGCTGAATCAACTCTTGCTGACATGACTCAACTGATTTTCACTAGACTTCCGACTTTTGTAGAAGACACACGTCATCCGTATATTCGGCAACTGGTACGGTAACAAGAGCTGTATTTTTTTCCAAAGTTAAAAATTTCAGGTAAATCCTTCTGAGAAACGCCAGAAACGCAAGAAGAAGCGACAATCATCTACTCACATCGAACACAAGGAGAAGAAAGATGATGAAACGGAAAGTAATGCAACAGAGTCAACGAAACTGATTACTGCGACTTCTGAACCAGAAATTGACGGAGCAGCTACACTTGGTAAGTTTTCTTTTTTTCAAATTTTCGAATTGAATTCAAAAGATACAGGATACGATGTGGTCTTGACTACTGATCCCCCTGTCGATGCTGTAACTCATCCAGATCGAAACGTAGATGAGGTGAAAAAAGAGAGGCTCTCTGAAGGAGAAGAAGCAGATTCAGAATCGGAAGGAGGAGAA</canonical>
            <polymorphic>TCAGGAGAATTTACAGGTAGCTGATCTTGCTGATATGAATCCACAAACATACCTATCTCCGTTCCTGGATGTGATCAAAGCCCAGAACACCAATGGACCGATAACAGAAGCTGCATTGGCTGCAGTTGCAAAATTCCTTAACTATGGACTCATCGATGCCAGTAGTATCAAGGCGGCGAATGCAGTGGAGTCGATTGCCTATGCTGTCGTTCATACTAAATTCATCGGTGGAAAAAGCAGTGGAAGCGATGAATGTGTCCTTTTCAAGATCTTACAGGTACAGAAACAAATTTAAGCCATTTTTTTATTGAGTTAAAAAATATTGAAAATCGAATTTCAGGTGCTCCGTTCGCTTCTCCTCTCACCACCAGGAATCTTATTGTCCAATGAAGCAGTTTGTGACATGATGCAGTCGTGTTTCAGAATAGTTTTCGAACAAAATCTATCCTTGCTGTTAAGAAAAGTAAGTCTTGAAATTTTGTTTCTGCTCAATATATAAMATTTGTTTTTCAGGCAGCTGAATCAACTCTTGCTGACATGACTCAACTGATTTTCACTAGACTTCCGACTTTTGTAGAAGACACACGTCATCCGTATATTCGGCAACTGGTACGGTAACAAGAGCTGTATTTTTTTCCAAAGTTAAAAATTTCAGGTAAATCCTTCTGAGAAACGCCAGAAACGCAAGAAGAAGCGACAATCATCTACTCACATCGAACACAAGGAGAAGAAAGATGATGAAACGGAAAGTAATGCAACAGAGTCAACGAAACTGATTACTGCGACTTCTGAACCAGAAATTGACGGAGCAGCTACACTTGGTAAGTTTTCTTTTTTTCAAATTTTCGAATTGAATTCAAAAGATACAGGATACGATGTGGTCTTGACTACTGATCCCCCTGTCGATGCTGTAACTCATCCAGATCGAAACGTAGATGAGGTGAAAAAAGAGAGGCTCTCTGAAGGAGAAGAAGCAGATTCAGAATCGGAAGGAGGAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>193 148 147 142 124 87 70 44 25 13 7</canonical_bands>
                <polymorphic_bands>193 173 147 142 124 87 70 44 13 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>151 148 147 142 124 87 70 44 42 25 8 7 5</canonical_bands>
                <polymorphic_bands>173 151 147 142 124 87 70 44 42 8 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTATTGTCCAATGAAGCAGTT</pcr_primer_p1>
		<pcr_primer_p2>CTCTTGTTACCGTACCAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTATTGTCCAATGAAGCAGTTTGTGACATGATGCAGTCGTGTTTCAGAATAGTTTTCGAACAAAATCTATCCTTGCTGTTAAGAAAAGTAAGTCTTGAAATTTTGTTTCTGCTCAATATATAAAATTTGTTTTTCAGGCAGCTGAATCAACTCTTGCTGACATGACTCAACTGATTTTCACTAGACTTCCGACTTTTGTAGAAGACACACGTCATCCGTATATTCGGCAACTGGTACGGTAACAAGAG</canonical_amplicon>
		<polymorphic_amplicon>CTTATTGTCCAATGAAGCAGTTTGTGACATGATGCAGTCGTGTTTCAGAATAGTTTTCGAACAAAATCTATCCTTGCTGTTAAGAAAAGTAAGTCTTGAAATTTTGTTTCTGCTCAATATATAAMATTTGTTTTTCAGGCAGCTGAATCAACTCTTGCTGACATGACTCAACTGATTTTCACTAGACTTCCGACTTTTGTAGAAGACACACGTCATCCGTATATTCGGCAACTGGTACGGTAACAAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12096</snp_id>
        <super_contig>c006201094.Contig1</super_contig>
        <contig_pos>214282</contig_pos>
        <strand>+</strand>
        <context>GTATTTTTTT[C/T]CAAAGTTAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCATCCGTATATTCGGCAACTGGTACGGTAACAAGAGCTGTATTTTTTT</left_flank>
        <right_flank>CAAAGTTAAAAATTTCAGGTAAATCCTTCTGAGAAACGCCAGAAACGCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAACTATGGACTCATCGATGCCAGTAGTATCAAGGCGGCGAATGCAGTGGAGTCGATTGCCTATGCTGTCGTTCATACTAAATTCATCGGTGGAAAAAGCAGTGGAAGCGATGAATGTGTCCTTTTCAAGATCTTACAGGTACAGAAACAAATTTAAGCCATTTTTTTATTGAGTTAAAAAATATTGAAAATCGAATTTCAGGTGCTCCGTTCGCTTCTCCTCTCACCACCAGGAATCTTATTGTCCAATGAAGCAGTTTGTGACATGATGCAGTCGTGTTTCAGAATAGTTTTCGAACAAAATCTATCCTTGCTGTTAAGAAAAGTAAGTCTTGAAATTTTGTTTCTGCTCAATATATAAAATTTGTTTTTCAGGCAGCTGAATCAACTCTTGCTGACATGACTCAACTGATTTTCACTAGACTTCCGACTTTTGTAGAAGACACACGTCATCCGTATATTCGGCAACTGGTACGGTAACAAGAGCTGTATTTTTTTCCAAAGTTAAAAATTTCAGGTAAATCCTTCTGAGAAACGCCAGAAACGCAAGAAGAAGCGACAATCATCTACTCACATCGAACACAAGGAGAAGAAAGATGATGAAACGGAAAGTAATGCAACAGAGTCAACGAAACTGATTACTGCGACTTCTGAACCAGAAATTGACGGAGCAGCTACACTTGGTAAGTTTTCTTTTTTTCAAATTTTCGAATTGAATTCAAAAGATACAGGATACGATGTGGTCTTGACTACTGATCCCCCTGTCGATGCTGTAACTCATCCAGATCGAAACGTAGATGAGGTGAAAAAAGAGAGGCTCTCTGAAGGAGAAGAAGCAGATTCAGAATCGGAAGGAGGAGAAGAAGAGAGGCCGATCAGAACTCATGGCGGTCTGCAGCGAGAGATAGTTTCAGACGAAGAAGATCCATTATCAAACGATGATCATACAGTAGGCGGAGAAGAAAAAATGCCATACGGATTGCCATGTTGCAGAGAGTT</canonical>
            <polymorphic>TTAACTATGGACTCATCGATGCCAGTAGTATCAAGGCGGCGAATGCAGTGGAGTCGATTGCCTATGCTGTCGTTCATACTAAATTCATCGGTGGAAAAAGCAGTGGAAGCGATGAATGTGTCCTTTTCAAGATCTTACAGGTACAGAAACAAATTTAAGCCATTTTTTTATTGAGTTAAAAAATATTGAAAATCGAATTTCAGGTGCTCCGTTCGCTTCTCCTCTCACCACCAGGAATCTTATTGTCCAATGAAGCAGTTTGTGACATGATGCAGTCGTGTTTCAGAATAGTTTTCGAACAAAATCTATCCTTGCTGTTAAGAAAAGTAAGTCTTGAAATTTTGTTTCTGCTCAATATATAAAATTTGTTTTTCAGGCAGCTGAATCAACTCTTGCTGACATGACTCAACTGATTTTCACTAGACTTCCGACTTTTGTAGAAGACACACGTCATCCGTATATTCGGCAACTGGTACGGTAACAAGAGCTGTATTTTTTTYCAAAGTTAAAAATTTCAGGTAAATCCTTCTGAGAAACGCCAGAAACGCAAGAAGAAGCGACAATCATCTACTCACATCGAACACAAGGAGAAGAAAGATGATGAAACGGAAAGTAATGCAACAGAGTCAACGAAACTGATTACTGCGACTTCTGAACCAGAAATTGACGGAGCAGCTACACTTGGTAAGTTTTCTTTTTTTCAAATTTTCGAATTGAATTCAAAAGATACAGGATACGATGTGGTCTTGACTACTGATCCCCCTGTCGATGCTGTAACTCATCCAGATCGAAACGTAGATGAGGTGAAAAAAGAGAGGCTCTCTGAAGGAGAAGAAGCAGATTCAGAATCGGAAGGAGGAGAAGAAGAGAGGCCGATCAGAACTCATGGCGGTCTGCAGCGAGAGATAGTTTCAGACGAAGAAGATCCATTATCAAACGATGATCATACAGTAGGCGGAGAAGAAAAAATGCCATACGGATTGCCATGTTGCAGAGAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATGACTCAACTGATTTTCACT</pcr_primer_p1>
		<pcr_primer_p2>CAGTAATCAGTTTCGTTGACTCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACATGACTCAACTGATTTTCACTAGACTTCCGACTTTTGTAGAAGACACACGTCATCCGTATATTCGGCAACTGGTACGGTAACAAGAGCTGTATTTTTTTCCAAAGTTAAAAATTTCAGGTAAATCCTTCTGAGAAACGCCAGAAACGCAAGAAGAAGCGACAATCATCTACTCACATCGAACACAAGGAGAAGAAAGATGATGAAACGGAAAGTAATGCAACAGAGTCAACGAAACTGATTACTG</canonical_amplicon>
		<polymorphic_amplicon>ACATGACTCAACTGATTTTCACTAGACTTCCGACTTTTGTAGAAGACACACGTCATCCGTATATTCGGCAACTGGTACGGTAACAAGAGCTGTATTTTTTTYCAAAGTTAAAAATTTCAGGTAAATCCTTCTGAGAAACGCCAGAAACGCAAGAAGAAGCGACAATCATCTACTCACATCGAACACAAGGAGAAGAAAGATGATGAAACGGAAAGTAATGCAACAGAGTCAACGAAACTGATTACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12097</snp_id>
        <super_contig>c006201094.Contig1</super_contig>
        <contig_pos>214315</contig_pos>
        <strand></strand>
        <context>ATCCTTCTGA[G/A]ARACGCCAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAGAGCTGTATTTTTTTCCAAAGTTAAAAATTTCAGGTAAATCCTTCTGA</left_flank>
        <right_flank>AAACGCCAGAAACGCAAGAAGAAGCGACAATCATCTACTCACATCGAACA</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGCGGCGAATGCAGTGGAGTCGATTGCCTATGCTGTCGTTCATACTAAATTCATCGGTGGAAAAAGCAGTGGAAGCGATGAATGTGTCCTTTTCAAGATCTTACAGGTACAGAAACAAATTTAAGCCATTTTTTTATTGAGTTAAAAAATATTGAAAATCGAATTTCAGGTGCTCCGTTCGCTTCTCCTCTCACCACCAGGAATCTTATTGTCCAATGAAGCAGTTTGTGACATGATGCAGTCGTGTTTCAGAATAGTTTTCGAACAAAATCTATCCTTGCTGTTAAGAAAAGTAAGTCTTGAAATTTTGTTTCTGCTCAATATATAAAATTTGTTTTTCAGGCAGCTGAATCAACTCTTGCTGACATGACTCAACTGATTTTCACTAGACTTCCGACTTTTGTAGAAGACACACGTCATCCGTATATTCGGCAACTGGTACGGTAACAAGAGCTGTATTTTTTTCCAAAGTTAAAAATTTCAGGTAAATCCTTCTGAGAAACGCCAGAAACGCAAGAAGAAGCGACAATCATCTACTCACATCGAACACAAGGAGAAGAAAGATGATGAAACGGAAAGTAATGCAACAGAGTCAACGAAACTGATTACTGCGACTTCTGAACCAGAAATTGACGGAGCAGCTACACTTGGTAAGTTTTCTTTTTTTCAAATTTTCGAATTGAATTCAAAAGATACAGGATACGATGTGGTCTTGACTACTGATCCCCCTGTCGATGCTGTAACTCATCCAGATCGAAACGTAGATGAGGTGAAAAAAGAGAGGCTCTCTGAAGGAGAAGAAGCAGATTCAGAATCGGAAGGAGGAGAAGAAGAGAGGCCGATCAGAACTCATGGCGGTCTGCAGCGAGAGATAGTTTCAGACGAAGAAGATCCATTATCAAACGATGATCATACAGTAGGCGGAGAAGAAAAAATGCCATACGGATTGCCATGTTGCAGAGAGTTGCTGAGGTATAATTTAAAATTAAATAGACTGGA</canonical>
            <polymorphic>AGGCGGCGAATGCAGTGGAGTCGATTGCCTATGCTGTCGTTCATACTAAATTCATCGGTGGAAAAAGCAGTGGAAGCGATGAATGTGTCCTTTTCAAGATCTTACAGGTACAGAAACAAATTTAAGCCATTTTTTTATTGAGTTAAAAAATATTGAAAATCGAATTTCAGGTGCTCCGTTCGCTTCTCCTCTCACCACCAGGAATCTTATTGTCCAATGAAGCAGTTTGTGACATGATGCAGTCGTGTTTCAGAATAGTTTTCGAACAAAATCTATCCTTGCTGTTAAGAAAAGTAAGTCTTGAAATTTTGTTTCTGCTCAATATATAAAATTTGTTTTTCAGGCAGCTGAATCAACTCTTGCTGACATGACTCAACTGATTTTCACTAGACTTCCGACTTTTGTAGAAGACACACGTCATCCGTATATTCGGCAACTGGTACGGTAACAAGAGCTGTATTTTTTTCCAAAGTTAAAAATTTCAGGTAAATCCTTCTGARAAACGCCAGAAACGCAAGAAGAAGCGACAATCATCTACTCACATCGAACACAAGGAGAAGAAAGATGATGAAACGGAAAGTAATGCAACAGAGTCAACGAAACTGATTACTGCGACTTCTGAACCAGAAATTGACGGAGCAGCTACACTTGGTAAGTTTTCTTTTTTTCAAATTTTCGAATTGAATTCAAAAGATACAGGATACGATGTGGTCTTGACTACTGATCCCCCTGTCGATGCTGTAACTCATCCAGATCGAAACGTAGATGAGGTGAAAAAAGAGAGGCTCTCTGAAGGAGAAGAAGCAGATTCAGAATCGGAAGGAGGAGAAGAAGAGAGGCCGATCAGAACTCATGGCGGTCTGCAGCGAGAGATAGTTTCAGACGAAGAAGATCCATTATCAAACGATGATCATACAGTAGGCGGAGAAGAAAAAATGCCATACGGATTGCCATGTTGCAGAGAGTTGCTGAGGTATAATTTAAAATTAAATAGACTGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>496 473 31</canonical_bands>
                <polymorphic_bands>969 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATGACTCAACTGATTTTCACT</pcr_primer_p1>
		<pcr_primer_p2>CAGTAATCAGTTTCGTTGACTCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACATGACTCAACTGATTTTCACTAGACTTCCGACTTTTGTAGAAGACACACGTCATCCGTATATTCGGCAACTGGTACGGTAACAAGAGCTGTATTTTTTTCCAAAGTTAAAAATTTCAGGTAAATCCTTCTGAGAAACGCCAGAAACGCAAGAAGAAGCGACAATCATCTACTCACATCGAACACAAGGAGAAGAAAGATGATGAAACGGAAAGTAATGCAACAGAGTCAACGAAACTGATTACTG</canonical_amplicon>
		<polymorphic_amplicon>ACATGACTCAACTGATTTTCACTAGACTTCCGACTTTTGTAGAAGACACACGTCATCCGTATATTCGGCAACTGGTACGGTAACAAGAGCTGTATTTTTTTCCAAAGTTAAAAATTTCAGGTAAATCCTTCTGARAAACGCCAGAAACGCAAGAAGAAGCGACAATCATCTACTCACATCGAACACAAGGAGAAGAAAGATGATGAAACGGAAAGTAATGCAACAGAGTCAACGAAACTGATTACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12098</snp_id>
        <super_contig>c006201094.Contig1</super_contig>
        <contig_pos>216181</contig_pos>
        <strand>+</strand>
        <context>TCATTATGTT[A/G]AATGTTGATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAACCATATTGATGCCGCGTTCACACTATCATACGCTATCATTATGTT</left_flank>
        <right_flank>AATGTTGATCAGCATAATCCACAGGTTTGTTTCACTTTCGGTTTTTTAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTCTCCATCCAACAATCTTCCATCTATGACGGAAATCATCGAACAGAAGAAACGCAAACGGTTGATTGCCGAAGGAACAGAACTTTTCAATCAGAGTCCGAAGAAAGGAATTGCATTTTTGAGAGAAAAGGGAATTCTAGGACACGACGAAGAAAGTTTGGTACAATGGTTGAGAGCAAATCCACAGCTAGATAAGAAGGCTATTGCGGATTATATCTGTAATCGTAAACATGCTGAGGCGAGTTTGAAACCTTCAATTTTTATTAACTCAACGTTTCTTTTCAGACTCTGAAAGCCTTTGTGAAAAGCTTCCCATTCGAAAACACTCGTCTGGATGTTGCTCTTCGTATGTTCCTCGAGACATTCCGTTTGCCCGGAGAATCGGCTGAAATTTCACTTGTGATGCAACACTTTTCGGAGGAATGGTCTTTTGCTAACAATGAACCATTCAACCATATTGATGCCGCGTTCACACTATCATACGCTATCATTATGTTGAATGTTGATCAGCATAATCCACAGGTTTGTTTCACTTTCGGTTTTTTAAATATAAATGTTCCTATTGCAGGCCAAACGAAACCAACCACCTATGACAGTCGACTGCTTCAAAAAAAATCTTTCTGGAACCAATGGGTCTAAGGATTTCGATCCGGCAATGTTGACTGATATGTATCATGCTATCAAGTCGGAAGAAATTGTCATGCCTGCTGAACAGAAGGGTAGTGTAAAAGAGGATTACATGTGGAAGGTGCTTCTTCGCCGAGGAGAAACGTCCGAAGGATCCTTCTTCCATGCTCCAACAGGATGGAATGATCGTGATCTATTCGCTGTTTGCTGGGGACCTGCTGTGGCTGCTTTGAGCTACGTATTCGACAAATCAGAACATGAACAAATACTTCAAAAAGCTCTCAATGGATACAGGAAGTGTGCCAAGATTTCAGCTCATTATGGAATGAAGGAAGTCTTTGATAACCTGTGCATCCATCTTTGCAAGTTCA</canonical>
            <polymorphic>CACTCTCCATCCAACAATCTTCCATCTATGACGGAAATCATCGAACAGAAGAAACGCAAACGGTTGATTGCCGAAGGAACAGAACTTTTCAATCAGAGTCCGAAGAAAGGAATTGCATTTTTGAGAGAAAAGGGAATTCTAGGACACGACGAAGAAAGTTTGGTACAATGGTTGAGAGCAAATCCACAGCTAGATAAGAAGGCTATTGCGGATTATATCTGTAATCGTAAACATGCTGAGGCGAGTTTGAAACCTTCAATTTTTATTAACTCAACGTTTCTTTTCAGACTCTGAAAGCCTTTGTGAAAAGCTTCCCATTCGAAAACACTCGTCTGGATGTTGCTCTTCGTATGTTCCTCGAGACATTCCGTTTGCCCGGAGAATCGGCTGAAATTTCACTTGTGATGCAACACTTTTCGGAGGAATGGTCTTTTGCTAACAATGAACCATTCAACCATATTGATGCCGCGTTCACACTATCATACGCTATCATTATGTTRAATGTTGATCAGCATAATCCACAGGTTTGTTTCACTTTCGGTTTTTTAAATATAAATGTTCCTATTGCAGGCCAAACGAAACCAACCACCTATGACAGTCGACTGCTTCAAAAAAAATCTTTCTGGAACCAATGGGTCTAAGGATTTCGATCCGGCAATGTTGACTGATATGTATCATGCTATCAAGTCGGAAGAAATTGTCATGCCTGCTGAACAGAAGGGTAGTGTAAAAGAGGATTACATGTGGAAGGTGCTTCTTCGCCGAGGAGAAACGTCCGAAGGATCCTTCTTCCATGCTCCAACAGGATGGAATGATCGTGATCTATTCGCTGTTTGCTGGGGACCTGCTGTGGCTGCTTTGAGCTACGTATTCGACAAATCAGAACATGAACAAATACTTCAAAAAGCTCTCAATGGATACAGGAAGTGTGCCAAGATTTCAGCTCATTATGGAATGAAGGAAGTCTTTGATAACCTGTGCATCCATCTTTGCAAGTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAACAATGAACCATTCAAC</pcr_primer_p1>
		<pcr_primer_p2>AGCATGATACATATCAGTCAACA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GCTAACAATGAACCATTCAACCATATTGATGCCGCGTTCACACTATCATACGCTATCATTATGTTGAATGTTGATCAGCATAATCCACAGGTTTGTTTCACTTTCGGTTTTTTAAATATAAATGTTCCTATTGCAGGCCAAACGAAACCAACCACCTATGACAGTCGACTGCTTCAAAAAAAATCTTTCTGGAACCAATGGGTCTAAGGATTTCGATCCGGCAATGTTGACTGATATGTATCATGCT</canonical_amplicon>
		<polymorphic_amplicon>GCTAACAATGAACCATTCAACCATATTGATGCCGCGTTCACACTATCATACGCTATCATTATGTTRAATGTTGATCAGCATAATCCACAGGTTTGTTTCACTTTCGGTTTTTTAAATATAAATGTTCCTATTGCAGGCCAAACGAAACCAACCACCTATGACAGTCGACTGCTTCAAAAAAAATCTTTCTGGAACCAATGGGTCTAAGGATTTCGATCCGGCAATGTTGACTGATATGTATCATGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12099</snp_id>
        <super_contig>c006201094.Contig1</super_contig>
        <contig_pos>216148</contig_pos>
        <strand>+</strand>
        <context>ATATTGATGC[C/G]GCGTTCACAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCGGAGGAATGGTCTTTTGCTAACAATGAACCATTCAACCATATTGATGC</left_flank>
        <right_flank>GCGTTCACACTATCATACGCTATCATTATGTTGAATGTTGATCAGCATAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGCGTCCACTCTTCTTCTCCGTTCCAACCGACACTCTCCATCCAACAATCTTCCATCTATGACGGAAATCATCGAACAGAAGAAACGCAAACGGTTGATTGCCGAAGGAACAGAACTTTTCAATCAGAGTCCGAAGAAAGGAATTGCATTTTTGAGAGAAAAGGGAATTCTAGGACACGACGAAGAAAGTTTGGTACAATGGTTGAGAGCAAATCCACAGCTAGATAAGAAGGCTATTGCGGATTATATCTGTAATCGTAAACATGCTGAGGCGAGTTTGAAACCTTCAATTTTTATTAACTCAACGTTTCTTTTCAGACTCTGAAAGCCTTTGTGAAAAGCTTCCCATTCGAAAACACTCGTCTGGATGTTGCTCTTCGTATGTTCCTCGAGACATTCCGTTTGCCCGGAGAATCGGCTGAAATTTCACTTGTGATGCAACACTTTTCGGAGGAATGGTCTTTTGCTAACAATGAACCATTCAACCATATTGATGCCGCGTTCACACTATCATACGCTATCATTATGTTGAATGTTGATCAGCATAATCCACAGGTTTGTTTCACTTTCGGTTTTTTAAATATAAATGTTCCTATTGCAGGCCAAACGAAACCAACCACCTATGACAGTCGACTGCTTCAAAAAAAATCTTTCTGGAACCAATGGGTCTAAGGATTTCGATCCGGCAATGTTGACTGATATGTATCATGCTATCAAGTCGGAAGAAATTGTCATGCCTGCTGAACAGAAGGGTAGTGTAAAAGAGGATTACATGTGGAAGGTGCTTCTTCGCCGAGGAGAAACGTCCGAAGGATCCTTCTTCCATGCTCCAACAGGATGGAATGATCGTGATCTATTCGCTGTTTGCTGGGGACCTGCTGTGGCTGCTTTGAGCTACGTATTCGACAAATCAGAACATGAACAAATACTTCAAAAAGCTCTCAATGGATACAGGAAGTGTGCCAAGATTTCAGCTCATTATGGAATGAAGGAAGTCT</canonical>
            <polymorphic>CCAGCGTCCACTCTTCTTCTCCGTTCCAACCGACACTCTCCATCCAACAATCTTCCATCTATGACGGAAATCATCGAACAGAAGAAACGCAAACGGTTGATTGCCGAAGGAACAGAACTTTTCAATCAGAGTCCGAAGAAAGGAATTGCATTTTTGAGAGAAAAGGGAATTCTAGGACACGACGAAGAAAGTTTGGTACAATGGTTGAGAGCAAATCCACAGCTAGATAAGAAGGCTATTGCGGATTATATCTGTAATCGTAAACATGCTGAGGCGAGTTTGAAACCTTCAATTTTTATTAACTCAACGTTTCTTTTCAGACTCTGAAAGCCTTTGTGAAAAGCTTCCCATTCGAAAACACTCGTCTGGATGTTGCTCTTCGTATGTTCCTCGAGACATTCCGTTTGCCCGGAGAATCGGCTGAAATTTCACTTGTGATGCAACACTTTTCGGAGGAATGGTCTTTTGCTAACAATGAACCATTCAACCATATTGATGCSGCGTTCACACTATCATACGCTATCATTATGTTGAATGTTGATCAGCATAATCCACAGGTTTGTTTCACTTTCGGTTTTTTAAATATAAATGTTCCTATTGCAGGCCAAACGAAACCAACCACCTATGACAGTCGACTGCTTCAAAAAAAATCTTTCTGGAACCAATGGGTCTAAGGATTTCGATCCGGCAATGTTGACTGATATGTATCATGCTATCAAGTCGGAAGAAATTGTCATGCCTGCTGAACAGAAGGGTAGTGTAAAAGAGGATTACATGTGGAAGGTGCTTCTTCGCCGAGGAGAAACGTCCGAAGGATCCTTCTTCCATGCTCCAACAGGATGGAATGATCGTGATCTATTCGCTGTTTGCTGGGGACCTGCTGTGGCTGCTTTGAGCTACGTATTCGACAAATCAGAACATGAACAAATACTTCAAAAAGCTCTCAATGGATACAGGAAGTGTGCCAAGATTTCAGCTCATTATGGAATGAAGGAAGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTGAAAGCCTTTGTGAAA</pcr_primer_p1>
		<pcr_primer_p2>GTGAAACAAACCTGTGGATTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTCTGAAAGCCTTTGTGAAAAGCTTCCCATTCGAAAACACTCGTCTGGATGTTGCTCTTCGTATGTTCCTCGAGACATTCCGTTTGCCCGGAGAATCGGCTGAAATTTCACTTGTGATGCAACACTTTTCGGAGGAATGGTCTTTTGCTAACAATGAACCATTCAACCATATTGATGCCGCGTTCACACTATCATACGCTATCATTATGTTGAATGTTGATCAGCATAATCCACAGGTTTGTTTCAC</canonical_amplicon>
		<polymorphic_amplicon>CTCTGAAAGCCTTTGTGAAAAGCTTCCCATTCGAAAACACTCGTCTGGATGTTGCTCTTCGTATGTTCCTCGAGACATTCCGTTTGCCCGGAGAATCGGCTGAAATTTCACTTGTGATGCAACACTTTTCGGAGGAATGGTCTTTTGCTAACAATGAACCATTCAACCATATTGATGCSGCGTTCACACTATCATACGCTATCATTATGTTGAATGTTGATCAGCATAATCCACAGGTTTGTTTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12100</snp_id>
        <super_contig>c006300932.Contig2</super_contig>
        <contig_pos>9372</contig_pos>
        <strand>+</strand>
        <context>CTTATGACGC[A/G]CGTAGAGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAAAAGAGAAAGGTCATCAGGATCAGAGTATCAAAAATTCTTATGACGC</left_flank>
        <right_flank>CGTAGAGAAATCTGAGAACTCATGGAAGGACCCTTGATGAATGTTTCATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCTTCTATGCCGTCCATCCTAATGTTATAGAACCTTCATTCGCACGTGACTTTTTTCTCCGCCATTTTCATTATCGGAATCCACAGTGCAAATAAATCGACCCATTATTTATCTTTTCCATCACATCATCAGGCGAGAACAAGTGAAAATAAGGTCTAAAGAGGAAGAGAGATGAAGTACATACTCCCGGCATTCTAAACAACACGTGACCTTCTGATGCCTTTCGCATGTTTTGTACAGAGAACGGAAATCAATACGGTCTATAATTACGATGAAAAGATGGTTTCCGATCTTTTGATACTTCTAAAAGTTTTCGAAAGTCATAGAAAACCTTCAGATAGATTTTATAATTTTTCCAGTTCCCAGTGAAAAGCGAGAAATAATGTGTAGGCTTTCAGCTCATTTTTTTGGTAATTTATTTGAAAAATCTTATTACTTTCCCTATGCATAAAAGAGAAAGGTCATCAGGATCAGAGTATCAAAAATTCTTATGACGCACGTAGAGAAATCTGAGAACTCATGGAAGGACCCTTGATGAATGTTTCATGCATAATGTAAATACGCTTGATCGCGAAAGTGCCTACTGTAAAAATGTATAGTAGTTAGTAGCTACCGTTAGTCTCTAACAAGTTGTTTTGTTCGTCGACATTTTGTCCATGATCGACTGTTCGACTTTATCAATGAATAGAATGTAGTTACTAACTCAATTTGAACTTCAGCAATGTTCAAAGGACGAATAACCAGTGTTGCAAGATAAAAAAGCTAAATTACTAGAGTTAACATGATGATGCGGGTATATGGCGTGATTCTGATTTTCTCATCTAAATTGGTTTGGAGGAAAAAAGATGTCATGTTAGTTTAGTATCATCTAATGAGATTTGATAGAAACCGTAAATAAATACATACATTGAAAAAGGCTCAACCCCCATTTTAAAAAAGAGGCCGAGAGGAATTTCACTGTGTGTTTCGTGTCCTTGTTTGTTTGTCAGTCGATTGCG</canonical>
            <polymorphic>CTTCTTCTATGCCGTCCATCCTAATGTTATAGAACCTTCATTCGCACGTGACTTTTTTCTCCGCCATTTTCATTATCGGAATCCACAGTGCAAATAAATCGACCCATTATTTATCTTTTCCATCACATCATCAGGCGAGAACAAGTGAAAATAAGGTCTAAAGAGGAAGAGAGATGAAGTACATACTCCCGGCATTCTAAACAACACGTGACCTTCTGATGCCTTTCGCATGTTTTGTACAGAGAACGGAAATCAATACGGTCTATAATTACGATGAAAAGATGGTTTCCGATCTTTTGATACTTCTAAAAGTTTTCGAAAGTCATAGAAAACCTTCAGATAGATTTTATAATTTTTCCAGTTCCCAGTGAAAAGCGAGAAATAATGTGTAGGCTTTCAGCTCATTTTTTTGGTAATTTATTTGAAAAATCTTATTACTTTCCCTATGCATAAAAGAGAAAGGTCATCAGGATCAGAGTATCAAAAATTCTTATGACGCRCGTAGAGAAATCTGAGAACTCATGGAAGGACCCTTGATGAATGTTTCATGCATAATGTAAATACGCTTGATCGCGAAAGTGCCTACTGTAAAAATGTATAGTAGTTAGTAGCTACCGTTAGTCTCTAACAAGTTGTTTTGTTCGTCGACATTTTGTCCATGATCGACTGTTCGACTTTATCAATGAATAGAATGTAGTTACTAACTCAATTTGAACTTCAGCAATGTTCAAAGGACGAATAACCAGTGTTGCAAGATAAAAAAGCTAAATTACTAGAGTTAACATGATGATGCGGGTATATGGCGTGATTCTGATTTTCTCATCTAAATTGGTTTGGAGGAAAAAAGATGTCATGTTAGTTTAGTATCATCTAATGAGATTTGATAGAAACCGTAAATAAATACATACATTGAAAAAGGCTCAACCCCCATTTTAAAAAAGAGGCCGAGAGGAATTTCACTGTGTGTTTCGTGTCCTTGTTTGTTTGTCAGTCGATTGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>499 294 160 47</canonical_bands>
                <polymorphic_bands>793 160 47</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>167 160 152 111 81 59 59 46 35 35 27 22 19 7 5 5 4 4 2</canonical_bands>
                <polymorphic_bands>192 167 160 152 59 59 46 35 35 27 22 19 7 5 5 4 4 2</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>500 294 160 46</canonical_bands>
                <polymorphic_bands>794 160 46</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATGCATAAAAGAGAAAGGTCA</pcr_primer_p1>
		<pcr_primer_p2>ATTCATTGATAAAGTCGAACAGT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTATGCATAAAAGAGAAAGGTCATCAGGATCAGAGTATCAAAAATTCTTATGACGCACGTAGAGAAATCTGAGAACTCATGGAAGGACCCTTGATGAATGTTTCATGCATAATGTAAATACGCTTGATCGCGAAAGTGCCTACTGTAAAAATGTATAGTAGTTAGTAGCTACCGTTAGTCTCTAACAAGTTGTTTTGTTCGTCGACATTTTGTCCATGATCGACTGTTCGACTTTATCAATGAAT</canonical_amplicon>
		<polymorphic_amplicon>CTATGCATAAAAGAGAAAGGTCATCAGGATCAGAGTATCAAAAATTCTTATGACGCRCGTAGAGAAATCTGAGAACTCATGGAAGGACCCTTGATGAATGTTTCATGCATAATGTAAATACGCTTGATCGCGAAAGTGCCTACTGTAAAAATGTATAGTAGTTAGTAGCTACCGTTAGTCTCTAACAAGTTGTTTTGTTCGTCGACATTTTGTCCATGATCGACTGTTCGACTTTATCAATGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12101</snp_id>
        <super_contig>c006300932.Contig2</super_contig>
        <contig_pos>9617</contig_pos>
        <strand>+</strand>
        <context>ACGAATAACC[A/G]GTGTTGCAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGTTACTAACTCAATTTGAACTTCAGCAATGTTCAAAGGACGAATAACC</left_flank>
        <right_flank>GTGTTGCAAGATAAAAAAGCTAAATTACTAGAGTTAACATGATGATGCGG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGGAAATCAATACGGTCTATAATTACGATGAAAAGATGGTTTCCGATCTTTTGATACTTCTAAAAGTTTTCGAAAGTCATAGAAAACCTTCAGATAGATTTTATAATTTTTCCAGTTCCCAGTGAAAAGCGAGAAATAATGTGTAGGCTTTCAGCTCATTTTTTTGGTAATTTATTTGAAAAATCTTATTACTTTCCCTATGCATAAAAGAGAAAGGTCATCAGGATCAGAGTATCAAAAATTCTTATGACGCACGTAGAGAAATCTGAGAACTCATGGAAGGACCCTTGATGAATGTTTCATGCATAATGTAAATACGCTTGATCGCGAAAGTGCCTACTGTAAAAATGTATAGTAGTTAGTAGCTACCGTTAGTCTCTAACAAGTTGTTTTGTTCGTCGACATTTTGTCCATGATCGACTGTTCGACTTTATCAATGAATAGAATGTAGTTACTAACTCAATTTGAACTTCAGCAATGTTCAAAGGACGAATAACCAGTGTTGCAAGATAAAAAAGCTAAATTACTAGAGTTAACATGATGATGCGGGTATATGGCGTGATTCTGATTTTCTCATCTAAATTGGTTTGGAGGAAAAAAGATGTCATGTTAGTTTAGTATCATCTAATGAGATTTGATAGAAACCGTAAATAAATACATACATTGAAAAAGGCTCAACCCCCATTTTAAAAAAGAGGCCGAGAGGAATTTCACTGTGTGTTTCGTGTCCTTGTTTGTTTGTCAGTCGATTGCGAACATGGTTTTGAGTCGCAATGGAAAAAAAAGAAGCTGCAGCTGTTGAGAAACAAAAATGAAAAAGCAAACAGATCGAAATTGACAGAGAAAAAAGATAGAAAGTCTTAGATACGAAGAATAACAAAGGGAAACAGATGAAGAATGAGCAAAGGCTAAACTATAGAGAATAATAAGTGGAAACTGTCATTTTTCAAGCTTTTGAATTTTTGAATTTTCAATATATTCTTTGAGTGTTTCGAAAAC</canonical>
            <polymorphic>ACGGAAATCAATACGGTCTATAATTACGATGAAAAGATGGTTTCCGATCTTTTGATACTTCTAAAAGTTTTCGAAAGTCATAGAAAACCTTCAGATAGATTTTATAATTTTTCCAGTTCCCAGTGAAAAGCGAGAAATAATGTGTAGGCTTTCAGCTCATTTTTTTGGTAATTTATTTGAAAAATCTTATTACTTTCCCTATGCATAAAAGAGAAAGGTCATCAGGATCAGAGTATCAAAAATTCTTATGACGCACGTAGAGAAATCTGAGAACTCATGGAAGGACCCTTGATGAATGTTTCATGCATAATGTAAATACGCTTGATCGCGAAAGTGCCTACTGTAAAAATGTATAGTAGTTAGTAGCTACCGTTAGTCTCTAACAAGTTGTTTTGTTCGTCGACATTTTGTCCATGATCGACTGTTCGACTTTATCAATGAATAGAATGTAGTTACTAACTCAATTTGAACTTCAGCAATGTTCAAAGGACGAATAACCRGTGTTGCAAGATAAAAAAGCTAAATTACTAGAGTTAACATGATGATGCGGGTATATGGCGTGATTCTGATTTTCTCATCTAAATTGGTTTGGAGGAAAAAAGATGTCATGTTAGTTTAGTATCATCTAATGAGATTTGATAGAAACCGTAAATAAATACATACATTGAAAAAGGCTCAACCCCCATTTTAAAAAAGAGGCCGAGAGGAATTTCACTGTGTGTTTCGTGTCCTTGTTTGTTTGTCAGTCGATTGCGAACATGGTTTTGAGTCGCAATGGAAAAAAAAGAAGCTGCAGCTGTTGAGAAACAAAAATGAAAAAGCAAACAGATCGAAATTGACAGAGAAAAAAGATAGAAAGTCTTAGATACGAAGAATAACAAAGGGAAACAGATGAAGAATGAGCAAAGGCTAAACTATAGAGAATAATAAGTGGAAACTGTCATTTTTCAAGCTTTTGAATTTTTGAATTTTCAATATATTCTTTGAGTGTTTCGAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGTGCCTACTGTAAAAATGT</pcr_primer_p1>
		<pcr_primer_p2>AAATCAGAATCACGCCATATAC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GAAAGTGCCTACTGTAAAAATGTATAGTAGTTAGTAGCTACCGTTAGTCTCTAACAAGTTGTTTTGTTCGTCGACATTTTGTCCATGATCGACTGTTCGACTTTATCAATGAATAGAATGTAGTTACTAACTCAATTTGAACTTCAGCAATGTTCAAAGGACGAATAACCAGTGTTGCAAGATAAAAAAGCTAAATTACTAGAGTTAACATGATGATGCGGGTATATGGCGTGATTCTGATTT</canonical_amplicon>
		<polymorphic_amplicon>GAAAGTGCCTACTGTAAAAATGTATAGTAGTTAGTAGCTACCGTTAGTCTCTAACAAGTTGTTTTGTTCGTCGACATTTTGTCCATGATCGACTGTTCGACTTTATCAATGAATAGAATGTAGTTACTAACTCAATTTGAACTTCAGCAATGTTCAAAGGACGAATAACCRGTGTTGCAAGATAAAAAAGCTAAATTACTAGAGTTAACATGATGATGCGGGTATATGGCGTGATTCTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12102</snp_id>
        <super_contig>c006300932.Contig2</super_contig>
        <contig_pos>9642</contig_pos>
        <strand>+</strand>
        <context>AAAAGCTAAA[G/T]TACTAGAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGCAATGTTCAAAGGACGAATAACCAGTGTTGCAAGATAAAAAAGCTAAA</left_flank>
        <right_flank>TACTAGAGTTAACATGATGATGCGGGTATATGGCGTGATTCTGATTTTCT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGATGAAAAGATGGTTTCCGATCTTTTGATACTTCTAAAAGTTTTCGAAAGTCATAGAAAACCTTCAGATAGATTTTATAATTTTTCCAGTTCCCAGTGAAAAGCGAGAAATAATGTGTAGGCTTTCAGCTCATTTTTTTGGTAATTTATTTGAAAAATCTTATTACTTTCCCTATGCATAAAAGAGAAAGGTCATCAGGATCAGAGTATCAAAAATTCTTATGACGCACGTAGAGAAATCTGAGAACTCATGGAAGGACCCTTGATGAATGTTTCATGCATAATGTAAATACGCTTGATCGCGAAAGTGCCTACTGTAAAAATGTATAGTAGTTAGTAGCTACCGTTAGTCTCTAACAAGTTGTTTTGTTCGTCGACATTTTGTCCATGATCGACTGTTCGACTTTATCAATGAATAGAATGTAGTTACTAACTCAATTTGAACTTCAGCAATGTTCAAAGGACGAATAACCAGTGTTGCAAGATAAAAAAGCTAAATTACTAGAGTTAACATGATGATGCGGGTATATGGCGTGATTCTGATTTTCTCATCTAAATTGGTTTGGAGGAAAAAAGATGTCATGTTAGTTTAGTATCATCTAATGAGATTTGATAGAAACCGTAAATAAATACATACATTGAAAAAGGCTCAACCCCCATTTTAAAAAAGAGGCCGAGAGGAATTTCACTGTGTGTTTCGTGTCCTTGTTTGTTTGTCAGTCGATTGCGAACATGGTTTTGAGTCGCAATGGAAAAAAAAGAAGCTGCAGCTGTTGAGAAACAAAAATGAAAAAGCAAACAGATCGAAATTGACAGAGAAAAAAGATAGAAAGTCTTAGATACGAAGAATAACAAAGGGAAACAGATGAAGAATGAGCAAAGGCTAAACTATAGAGAATAATAAGTGGAAACTGTCATTTTTCAAGCTTTTGAATTTTTGAATTTTCAATATATTCTTTGAGTGTTTCGAAAACAAAAAAACTCACTTTTCTTCTTCTG</canonical>
            <polymorphic>ACGATGAAAAGATGGTTTCCGATCTTTTGATACTTCTAAAAGTTTTCGAAAGTCATAGAAAACCTTCAGATAGATTTTATAATTTTTCCAGTTCCCAGTGAAAAGCGAGAAATAATGTGTAGGCTTTCAGCTCATTTTTTTGGTAATTTATTTGAAAAATCTTATTACTTTCCCTATGCATAAAAGAGAAAGGTCATCAGGATCAGAGTATCAAAAATTCTTATGACGCACGTAGAGAAATCTGAGAACTCATGGAAGGACCCTTGATGAATGTTTCATGCATAATGTAAATACGCTTGATCGCGAAAGTGCCTACTGTAAAAATGTATAGTAGTTAGTAGCTACCGTTAGTCTCTAACAAGTTGTTTTGTTCGTCGACATTTTGTCCATGATCGACTGTTCGACTTTATCAATGAATAGAATGTAGTTACTAACTCAATTTGAACTTCAGCAATGTTCAAAGGACGAATAACCAGTGTTGCAAGATAAAAAAGCTAAAKTACTAGAGTTAACATGATGATGCGGGTATATGGCGTGATTCTGATTTTCTCATCTAAATTGGTTTGGAGGAAAAAAGATGTCATGTTAGTTTAGTATCATCTAATGAGATTTGATAGAAACCGTAAATAAATACATACATTGAAAAAGGCTCAACCCCCATTTTAAAAAAGAGGCCGAGAGGAATTTCACTGTGTGTTTCGTGTCCTTGTTTGTTTGTCAGTCGATTGCGAACATGGTTTTGAGTCGCAATGGAAAAAAAAGAAGCTGCAGCTGTTGAGAAACAAAAATGAAAAAGCAAACAGATCGAAATTGACAGAGAAAAAAGATAGAAAGTCTTAGATACGAAGAATAACAAAGGGAAACAGATGAAGAATGAGCAAAGGCTAAACTATAGAGAATAATAAGTGGAAACTGTCATTTTTCAAGCTTTTGAATTTTTGAATTTTCAATATATTCTTTGAGTGTTTCGAAAACAAAAAAACTCACTTTTCTTCTTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>222 126 126 125 80 71 64 60 59 59 8</canonical_bands>
                <polymorphic_bands>222 126 126 125 119 80 71 64 59 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGACTTTATCAATGAATAGAATG</pcr_primer_p1>
		<pcr_primer_p2>TGAGCCTTTTTCAATGTATGTA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TCGACTTTATCAATGAATAGAATGTAGTTACTAACTCAATTTGAACTTCAGCAATGTTCAAAGGACGAATAACCAGTGTTGCAAGATAAAAAAGCTAAATTACTAGAGTTAACATGATGATGCGGGTATATGGCGTGATTCTGATTTTCTCATCTAAATTGGTTTGGAGGAAAAAAGATGTCATGTTAGTTTAGTATCATCTAATGAGATTTGATAGAAACCGTAAATAAATACATACATTGAAAAAGGCTCA</canonical_amplicon>
		<polymorphic_amplicon>TCGACTTTATCAATGAATAGAATGTAGTTACTAACTCAATTTGAACTTCAGCAATGTTCAAAGGACGAATAACCAGTGTTGCAAGATAAAAAAGCTAAAKTACTAGAGTTAACATGATGATGCGGGTATATGGCGTGATTCTGATTTTCTCATCTAAATTGGTTTGGAGGAAAAAAGATGTCATGTTAGTTTAGTATCATCTAATGAGATTTGATAGAAACCGTAAATAAATACATACATTGAAAAAGGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12103</snp_id>
        <super_contig>c006300932.Contig2</super_contig>
        <contig_pos>45221</contig_pos>
        <strand>+</strand>
        <context>TGAACCATTA[A/G]AAAGATTCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGAATAAGATAAAACTGGGGATTAACATCGTTCAAAAATTGAACCATTA</left_flank>
        <right_flank>AAAGATTCATTTGCCAACTCGTCGTTCCTCATGTTCGGCAAGACGGGAGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAAATTTAGAATTCACGAATTTTCAAATTGCAGATTCTTCTGAATTATGAATCTAATCTTTTGTATGCCTCACCTTGAGAGCAGCAGGAGCCGGCGGAACAGCTTTGGACGACATTTTTCAGAACAAAAAACCAGAACCTCGTGAGAAAAATTTTTAGAATATTCTCGACCCTGGTCCCTTCTGTCCCTCTTTTATACTATTCTTCGATGCTCCGCCCCTTTTTCCAATCCCCAAAAATTAATGAAATCAGTCCGGAGCACAAGTGCACACCTGTCACCATGGGTGATTAATTGAGTTTTCTTATTCTGAGTTGCTCACATTTTCGGAAAATTTCTGGACATACGAGCATTTTGCAAAAGGTGGAATCGAAGTACAATTTTCTGTTTGTCGTTGTTGAGAAAAAAACACTTGAAAATAATCTATTTCGGGCTGATTTGTGGCACTAATCGAATAAGATAAAACTGGGGATTAACATCGTTCAAAAATTGAACCATTAAAAAGATTCATTTGCCAACTCGTCGTTCCTCATGTTCGGCAAGACGGGAGTAGAGGATTTCCTGAAAAAAAATTGTGAAAGAAAAATTTCGAAATGCAAATCTATTATTTAAATATCAAACAACTGTTGAGTTCGTGAACTATACAATTGTAGAATTTCTCGATTTCAGGTTTTCCGAAAATTAATAGACGACAAAATTTTTTCTAAAACAAACCCCATAAAGATGCGCGAAGAATTCGGTCCACTTGTCATCTTTCATCTCTAGTGGCTTATCAAATGTGCTTTTACAGAAGACACATTTCACCTGAGAAAGTATTTGAATTTTTAGAGGAAATTTACCAAATTCGAATTTTTTCAGTTTTCAAAACCAGCGAAAAATAACGACTCTTCAAGAGGATCACAATTTTTCAGATTATTTTTTTCGATTATTCAAACTTTCAGCATTCATACCACTTCCTGAGTGTGCTTCGATTCATAATGCTCTCTGAACGAATTCTTCGT</canonical>
            <polymorphic>AGGAAATTTAGAATTCACGAATTTTCAAATTGCAGATTCTTCTGAATTATGAATCTAATCTTTTGTATGCCTCACCTTGAGAGCAGCAGGAGCCGGCGGAACAGCTTTGGACGACATTTTTCAGAACAAAAAACCAGAACCTCGTGAGAAAAATTTTTAGAATATTCTCGACCCTGGTCCCTTCTGTCCCTCTTTTATACTATTCTTCGATGCTCCGCCCCTTTTTCCAATCCCCAAAAATTAATGAAATCAGTCCGGAGCACAAGTGCACACCTGTCACCATGGGTGATTAATTGAGTTTTCTTATTCTGAGTTGCTCACATTTTCGGAAAATTTCTGGACATACGAGCATTTTGCAAAAGGTGGAATCGAAGTACAATTTTCTGTTTGTCGTTGTTGAGAAAAAAACACTTGAAAATAATCTATTTCGGGCTGATTTGTGGCACTAATCGAATAAGATAAAACTGGGGATTAACATCGTTCAAAAATTGAACCATTARAAAGATTCATTTGCCAACTCGTCGTTCCTCATGTTCGGCAAGACGGGAGTAGAGGATTTCCTGAAAAAAAATTGTGAAAGAAAAATTTCGAAATGCAAATCTATTATTTAAATATCAAACAACTGTTGAGTTCGTGAACTATACAATTGTAGAATTTCTCGATTTCAGGTTTTCCGAAAATTAATAGACGACAAAATTTTTTCTAAAACAAACCCCATAAAGATGCGCGAAGAATTCGGTCCACTTGTCATCTTTCATCTCTAGTGGCTTATCAAATGTGCTTTTACAGAAGACACATTTCACCTGAGAAAGTATTTGAATTTTTAGAGGAAATTTACCAAATTCGAATTTTTTCAGTTTTCAAAACCAGCGAAAAATAACGACTCTTCAAGAGGATCACAATTTTTCAGATTATTTTTTTCGATTATTCAAACTTTCAGCATTCATACCACTTCCTGAGTGTGCTTCGATTCATAATGCTCTCTGAACGAATTCTTCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>319 241 182 111 73 49 25</canonical_bands>
                <polymorphic_bands>319 241 182 136 73 49</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTGTCGTTGTTGAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CGAACTCAACAGTTGTTTGATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTTGTCGTTGTTGAGAAAAAAACACTTGAAAATAATCTATTTCGGGCTGATTTGTGGCACTAATCGAATAAGATAAAACTGGGGATTAACATCGTTCAAAAATTGAACCATTAAAAAGATTCATTTGCCAACTCGTCGTTCCTCATGTTCGGCAAGACGGGAGTAGAGGATTTCCTGAAAAAAAATTGTGAAAGAAAAATTTCGAAATGCAAATCTATTATTTAAATATCAAACAACTGTTGAGTTCG</canonical_amplicon>
		<polymorphic_amplicon>GTTTGTCGTTGTTGAGAAAAAAACACTTGAAAATAATCTATTTCGGGCTGATTTGTGGCACTAATCGAATAAGATAAAACTGGGGATTAACATCGTTCAAAAATTGAACCATTARAAAGATTCATTTGCCAACTCGTCGTTCCTCATGTTCGGCAAGACGGGAGTAGAGGATTTCCTGAAAAAAAATTGTGAAAGAAAAATTTCGAAATGCAAATCTATTATTTAAATATCAAACAACTGTTGAGTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12104</snp_id>
        <super_contig>c006300932.Contig2</super_contig>
        <contig_pos>45419</contig_pos>
        <strand>+</strand>
        <context>ACGACAAAAT[G/T]TTTTCTAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTAGAATTTCTCGATTTCAGGTTTTCCGAAAATTAATAGACGACAAAAT</left_flank>
        <right_flank>TTTTCTAAAACAAACCCCATAAAGATGCGCGAAGAATTCGGTCCACTTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTATTCTTCGATGCTCCGCCCCTTTTTCCAATCCCCAAAAATTAATGAAATCAGTCCGGAGCACAAGTGCACACCTGTCACCATGGGTGATTAATTGAGTTTTCTTATTCTGAGTTGCTCACATTTTCGGAAAATTTCTGGACATACGAGCATTTTGCAAAAGGTGGAATCGAAGTACAATTTTCTGTTTGTCGTTGTTGAGAAAAAAACACTTGAAAATAATCTATTTCGGGCTGATTTGTGGCACTAATCGAATAAGATAAAACTGGGGATTAACATCGTTCAAAAATTGAACCATTAAAAAGATTCATTTGCCAACTCGTCGTTCCTCATGTTCGGCAAGACGGGAGTAGAGGATTTCCTGAAAAAAAATTGTGAAAGAAAAATTTCGAAATGCAAATCTATTATTTAAATATCAAACAACTGTTGAGTTCGTGAACTATACAATTGTAGAATTTCTCGATTTCAGGTTTTCCGAAAATTAATAGACGACAAAATTTTTTCTAAAACAAACCCCATAAAGATGCGCGAAGAATTCGGTCCACTTGTCATCTTTCATCTCTAGTGGCTTATCAAATGTGCTTTTACAGAAGACACATTTCACCTGAGAAAGTATTTGAATTTTTAGAGGAAATTTACCAAATTCGAATTTTTTCAGTTTTCAAAACCAGCGAAAAATAACGACTCTTCAAGAGGATCACAATTTTTCAGATTATTTTTTTCGATTATTCAAACTTTCAGCATTCATACCACTTCCTGAGTGTGCTTCGATTCATAATGCTCTCTGAACGAATTCTTCGTTTCGAATTTCTTCTGGCACAAATGACACTGCGCATCAAGATTGTGATCGTTCATTTGATGATGGATTAGGGCCTGAAATTTTGATTTTTCACGACTTTCGTCCCTTTGTATTCATTTTTGGGTTTTTTTTTCAGTAAAAACTCTTTTTCATAGAAAGTTTTTAGAACGTTCTGGTGCCAGGCAATGTCAGGTAAAGCT</canonical>
            <polymorphic>ACTATTCTTCGATGCTCCGCCCCTTTTTCCAATCCCCAAAAATTAATGAAATCAGTCCGGAGCACAAGTGCACACCTGTCACCATGGGTGATTAATTGAGTTTTCTTATTCTGAGTTGCTCACATTTTCGGAAAATTTCTGGACATACGAGCATTTTGCAAAAGGTGGAATCGAAGTACAATTTTCTGTTTGTCGTTGTTGAGAAAAAAACACTTGAAAATAATCTATTTCGGGCTGATTTGTGGCACTAATCGAATAAGATAAAACTGGGGATTAACATCGTTCAAAAATTGAACCATTAAAAAGATTCATTTGCCAACTCGTCGTTCCTCATGTTCGGCAAGACGGGAGTAGAGGATTTCCTGAAAAAAAATTGTGAAAGAAAAATTTCGAAATGCAAATCTATTATTTAAATATCAAACAACTGTTGAGTTCGTGAACTATACAATTGTAGAATTTCTCGATTTCAGGTTTTCCGAAAATTAATAGACGACAAAATKTTTTCTAAAACAAACCCCATAAAGATGCGCGAAGAATTCGGTCCACTTGTCATCTTTCATCTCTAGTGGCTTATCAAATGTGCTTTTACAGAAGACACATTTCACCTGAGAAAGTATTTGAATTTTTAGAGGAAATTTACCAAATTCGAATTTTTTCAGTTTTCAAAACCAGCGAAAAATAACGACTCTTCAAGAGGATCACAATTTTTCAGATTATTTTTTTCGATTATTCAAACTTTCAGCATTCATACCACTTCCTGAGTGTGCTTCGATTCATAATGCTCTCTGAACGAATTCTTCGTTTCGAATTTCTTCTGGCACAAATGACACTGCGCATCAAGATTGTGATCGTTCATTTGATGATGGATTAGGGCCTGAAATTTTGATTTTTCACGACTTTCGTCCCTTTGTATTCATTTTTGGGTTTTTTTTTCAGTAAAAACTCTTTTTCATAGAAAGTTTTTAGAACGTTCTGGTGCCAGGCAATGTCAGGTAAAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>252 144 133 122 86 72 69 42 38 14 13 9 6</canonical_bands>
                <polymorphic_bands>252 144 133 122 86 80 72 69 14 13 9 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>122 109 90 86 83 72 61 54 53 46 40 40 38 26 16 14 14 13 9 8 6</canonical_bands>
                <polymorphic_bands>122 109 90 86 83 72 61 54 54 53 46 40 40 26 14 14 13 9 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTAGAGGATTTCCTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GTCTTCTGTAAAAGCACATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAGTAGAGGATTTCCTGAAAAAAAATTGTGAAAGAAAAATTTCGAAATGCAAATCTATTATTTAAATATCAAACAACTGTTGAGTTCGTGAACTATACAATTGTAGAATTTCTCGATTTCAGGTTTTCCGAAAATTAATAGACGACAAAATTTTTTCTAAAACAAACCCCATAAAGATGCGCGAAGAATTCGGTCCACTTGTCATCTTTCATCTCTAGTGGCTTATCAAATGTGCTTTTACAGAAGAC</canonical_amplicon>
		<polymorphic_amplicon>GAGTAGAGGATTTCCTGAAAAAAAATTGTGAAAGAAAAATTTCGAAATGCAAATCTATTATTTAAATATCAAACAACTGTTGAGTTCGTGAACTATACAATTGTAGAATTTCTCGATTTCAGGTTTTCCGAAAATTAATAGACGACAAAATKTTTTCTAAAACAAACCCCATAAAGATGCGCGAAGAATTCGGTCCACTTGTCATCTTTCATCTCTAGTGGCTTATCAAATGTGCTTTTACAGAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12105</snp_id>
        <super_contig>c006300932.Contig2</super_contig>
        <contig_pos>45491</contig_pos>
        <strand>+</strand>
        <context>TCTAGTGGCT[C/T]ATCAAATGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGATGCGCGAAGAATTCGGTCCACTTGTCATCTTTCATCTCTAGTGGCT</left_flank>
        <right_flank>ATCAAATGTGCTTTTACAGAAGACACATTTCACCTGAGAAAGTATTTGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACCTGTCACCATGGGTGATTAATTGAGTTTTCTTATTCTGAGTTGCTCACATTTTCGGAAAATTTCTGGACATACGAGCATTTTGCAAAAGGTGGAATCGAAGTACAATTTTCTGTTTGTCGTTGTTGAGAAAAAAACACTTGAAAATAATCTATTTCGGGCTGATTTGTGGCACTAATCGAATAAGATAAAACTGGGGATTAACATCGTTCAAAAATTGAACCATTAAAAAGATTCATTTGCCAACTCGTCGTTCCTCATGTTCGGCAAGACGGGAGTAGAGGATTTCCTGAAAAAAAATTGTGAAAGAAAAATTTCGAAATGCAAATCTATTATTTAAATATCAAACAACTGTTGAGTTCGTGAACTATACAATTGTAGAATTTCTCGATTTCAGGTTTTCCGAAAATTAATAGACGACAAAATTTTTTCTAAAACAAACCCCATAAAGATGCGCGAAGAATTCGGTCCACTTGTCATCTTTCATCTCTAGTGGCTTATCAAATGTGCTTTTACAGAAGACACATTTCACCTGAGAAAGTATTTGAATTTTTAGAGGAAATTTACCAAATTCGAATTTTTTCAGTTTTCAAAACCAGCGAAAAATAACGACTCTTCAAGAGGATCACAATTTTTCAGATTATTTTTTTCGATTATTCAAACTTTCAGCATTCATACCACTTCCTGAGTGTGCTTCGATTCATAATGCTCTCTGAACGAATTCTTCGTTTCGAATTTCTTCTGGCACAAATGACACTGCGCATCAAGATTGTGATCGTTCATTTGATGATGGATTAGGGCCTGAAATTTTGATTTTTCACGACTTTCGTCCCTTTGTATTCATTTTTGGGTTTTTTTTTCAGTAAAAACTCTTTTTCATAGAAAGTTTTTAGAACGTTCTGGTGCCAGGCAATGTCAGGTAAAGCTAAAATGAGATTGTGAGTCCTTTCATTCGGTAATTCAATTTTCCTCCAAGAAAAACCTAATGGCAACTTTCAA</canonical>
            <polymorphic>CACCTGTCACCATGGGTGATTAATTGAGTTTTCTTATTCTGAGTTGCTCACATTTTCGGAAAATTTCTGGACATACGAGCATTTTGCAAAAGGTGGAATCGAAGTACAATTTTCTGTTTGTCGTTGTTGAGAAAAAAACACTTGAAAATAATCTATTTCGGGCTGATTTGTGGCACTAATCGAATAAGATAAAACTGGGGATTAACATCGTTCAAAAATTGAACCATTAAAAAGATTCATTTGCCAACTCGTCGTTCCTCATGTTCGGCAAGACGGGAGTAGAGGATTTCCTGAAAAAAAATTGTGAAAGAAAAATTTCGAAATGCAAATCTATTATTTAAATATCAAACAACTGTTGAGTTCGTGAACTATACAATTGTAGAATTTCTCGATTTCAGGTTTTCCGAAAATTAATAGACGACAAAATTTTTTCTAAAACAAACCCCATAAAGATGCGCGAAGAATTCGGTCCACTTGTCATCTTTCATCTCTAGTGGCTYATCAAATGTGCTTTTACAGAAGACACATTTCACCTGAGAAAGTATTTGAATTTTTAGAGGAAATTTACCAAATTCGAATTTTTTCAGTTTTCAAAACCAGCGAAAAATAACGACTCTTCAAGAGGATCACAATTTTTCAGATTATTTTTTTCGATTATTCAAACTTTCAGCATTCATACCACTTCCTGAGTGTGCTTCGATTCATAATGCTCTCTGAACGAATTCTTCGTTTCGAATTTCTTCTGGCACAAATGACACTGCGCATCAAGATTGTGATCGTTCATTTGATGATGGATTAGGGCCTGAAATTTTGATTTTTCACGACTTTCGTCCCTTTGTATTCATTTTTGGGTTTTTTTTTCAGTAAAAACTCTTTTTCATAGAAAGTTTTTAGAACGTTCTGGTGCCAGGCAATGTCAGGTAAAGCTAAAATGAGATTGTGAGTCCTTTCATTCGGTAATTCAATTTTCCTCCAAGAAAAACCTAATGGCAACTTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAAAACAAACCCCATAAAGAT</pcr_primer_p1>
		<pcr_primer_p2>GTATGAATGCTGAAAGTTTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTAAAACAAACCCCATAAAGATGCGCGAAGAATTCGGTCCACTTGTCATCTTTCATCTCTAGTGGCTTATCAAATGTGCTTTTACAGAAGACACATTTCACCTGAGAAAGTATTTGAATTTTTAGAGGAAATTTACCAAATTCGAATTTTTTCAGTTTTCAAAACCAGCGAAAAATAACGACTCTTCAAGAGGATCACAATTTTTCAGATTATTTTTTTCGATTATTCAAACTTTCAGCATTCATAC</canonical_amplicon>
		<polymorphic_amplicon>TCTAAAACAAACCCCATAAAGATGCGCGAAGAATTCGGTCCACTTGTCATCTTTCATCTCTAGTGGCTYATCAAATGTGCTTTTACAGAAGACACATTTCACCTGAGAAAGTATTTGAATTTTTAGAGGAAATTTACCAAATTCGAATTTTTTCAGTTTTCAAAACCAGCGAAAAATAACGACTCTTCAAGAGGATCACAATTTTTCAGATTATTTTTTTCGATTATTCAAACTTTCAGCATTCATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12107</snp_id>
        <super_contig>c006300932.Contig2</super_contig>
        <contig_pos>51577</contig_pos>
        <strand>+</strand>
        <context>ATTTGAACTA[C/T]GGTCTTCACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCGGAATGCCCAATGAGACCGACGGAACCGTGGCAGGCGATTTGAACTA</left_flank>
        <right_flank>GGTCTTCACACCGTTTTCTTCACCGAGCTTTTCCGAGGTGCGTTTTCAAG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAATCGATTCATTTCTGAATTAATTTTTTAATAGGTTAAGATTCGTAATTAATCCCGCAATTAAACATCAAGGAAATTTAGGTCTAGTTGGAACTTTCCACACGCACCGAAAACGCGCAATGTATTTTCTCCTGACGCCGTTCTCGATCTTCAGGACGTTTGCGCCGTTTCGTGGGGTGTTTCCTTTTGTCGCTCGCCATGTTTTGAACCATTTTATCGTTAACGAAAATCATTAAAAATTAAACGAATGTTTGTTTTCAGTAACTTAACCTATCGAAAACATGGCGCTGAAAAGTGTGGCAGTGCTGACAAAAGGCATGTTCGGAAGAATGCCGGCCCAGGTTTGTTCTTAACGACGAGCTTGAAATAAATACAAATCGGGAGTTTTCAGCTCGCCATCAGCAGTGTCCCATCAAATACCATCCAAAGACGATCCAACTATAAATTCGTCGGAATGCCCAATGAGACCGACGGAACCGTGGCAGGCGATTTGAACTATGGTCTTCACACCGTTTTCTTCACCGAGCTTTTCCGAGGTGCGTTTTCAAGAGGATGAAAAATTTTGTTTGTGGCATACAAAAATTGTACAAGTCAGCTATTTCAAGTCAGCTATTAAAATTTCAATTCTAAATCAGGTTGTTTGTTAAGTTATTTGGAATATGAACTACAACTCATTGGTTTTTCAGGATTTGGAGTGATGCTTGGTCACGTCTTCATGGAGCCAGCCACCATCAATTACCCTTTCGAAAAGGGACCTCTCAGCTCGAGATTCAGGTGACTAGTAGCTGCAAAAATTTAAAAAAAACCACGAACAAATACATTTTTATTCAAAATCAAGACAATTCAGAATTCAAGAACCCCTTAAACAAAAAACTCCGGTTTTCTCTTCAACACTTATTATTGTTGTCCGAAAAAATTGGAGTTAGAGAGTAGTTTTTGCAGTCTGAATACGGTATGCACCTCGAAGCGGCAAGCCTAAATAGCACATACTCGGTGGAG</canonical>
            <polymorphic>TTAATCGATTCATTTCTGAATTAATTTTTTAATAGGTTAAGATTCGTAATTAATCCCGCAATTAAACATCAAGGAAATTTAGGTCTAGTTGGAACTTTCCACACGCACCGAAAACGCGCAATGTATTTTCTCCTGACGCCGTTCTCGATCTTCAGGACGTTTGCGCCGTTTCGTGGGGTGTTTCCTTTTGTCGCTCGCCATGTTTTGAACCATTTTATCGTTAACGAAAATCATTAAAAATTAAACGAATGTTTGTTTTCAGTAACTTAACCTATCGAAAACATGGCGCTGAAAAGTGTGGCAGTGCTGACAAAAGGCATGTTCGGAAGAATGCCGGCCCAGGTTTGTTCTTAACGACGAGCTTGAAATAAATACAAATCGGGAGTTTTCAGCTCGCCATCAGCAGTGTCCCATCAAATACCATCCAAAGACGATCCAACTATAAATTCGTCGGAATGCCCAATGAGACCGACGGAACCGTGGCAGGCGATTTGAACTAYGGTCTTCACACCGTTTTCTTCACCGAGCTTTTCCGAGGTGCGTTTTCAAGAGGATGAAAAATTTTGTTTGTGGCATACAAAAATTGTACAAGTCAGCTATTTCAAGTCAGCTATTAAAATTTCAATTCTAAATCAGGTTGTTTGTTAAGTTATTTGGAATATGAACTACAACTCATTGGTTTTTCAGGATTTGGAGTGATGCTTGGTCACGTCTTCATGGAGCCAGCCACCATCAATTACCCTTTCGAAAAGGGACCTCTCAGCTCGAGATTCAGGTGACTAGTAGCTGCAAAAATTTAAAAAAAACCACGAACAAATACATTTTTATTCAAAATCAAGACAATTCAGAATTCAAGAACCCCTTAAACAAAAAACTCCGGTTTTCTCTTCAACACTTATTATTGTTGTCCGAAAAAATTGGAGTTAGAGAGTAGTTTTTGCAGTCTGAATACGGTATGCACCTCGAAGCGGCAAGCCTAAATAGCACATACTCGGTGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAATACAAATCGGGAGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TAGCTGACTTGAAATAGCTGACT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATAAATACAAATCGGGAGTTTTCAGCTCGCCATCAGCAGTGTCCCATCAAATACCATCCAAAGACGATCCAACTATAAATTCGTCGGAATGCCCAATGAGACCGACGGAACCGTGGCAGGCGATTTGAACTATGGTCTTCACACCGTTTTCTTCACCGAGCTTTTCCGAGGTGCGTTTTCAAGAGGATGAAAAATTTTGTTTGTGGCATACAAAAATTGTACAAGTCAGCTATTTCAAGTCAGCTA</canonical_amplicon>
		<polymorphic_amplicon>ATAAATACAAATCGGGAGTTTTCAGCTCGCCATCAGCAGTGTCCCATCAAATACCATCCAAAGACGATCCAACTATAAATTCGTCGGAATGCCCAATGAGACCGACGGAACCGTGGCAGGCGATTTGAACTAYGGTCTTCACACCGTTTTCTTCACCGAGCTTTTCCGAGGTGCGTTTTCAAGAGGATGAAAAATTTTGTTTGTGGCATACAAAAATTGTACAAGTCAGCTATTTCAAGTCAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12108</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>47488</contig_pos>
        <strand>+</strand>
        <context>TAATTTTTTT[A/T]AAATATACAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTCTGTTTTGGTAGAAAGGATCATTAGGATCATTCTCTGTAATTTTTTT</left_flank>
        <right_flank>AAATATACACCAGTTTAATCCCGACTTCCAGGTCGAAAAGTTCCAAACAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGTGTTATCCTCCGTCATTAGACAAAGAGTTTGGAACTTGCTCCAATTCTCAATTTTTTTAAAGAGTATCATTCTGAAATCGAATGATTACGACTGAGATTTAAAATGACAGAGTCTTTTTTCTGTGAAAAATAATTCCTTTCTTTGTAAAGATGATAGCGTATAAATAATATTGGATTCTGTTGTTGGAAATGTACTGTAAAACCTGTAATAGTATTGCCCCCTCAATTTAAAATTTGCACCAATTTTCCTCGGTTCCTGCGAAAGATATAAAAAAGTTTTCAACAGATAAACTGTTTATCATAATGTCATAATGTTTTCCCAGTTGACAAATTTTCAATATCATGCATAAAAATCGAGATAATTGAGCTCAAGTGTAATGGCCTTCCATTACAGGTTCTAAGGTATTCCGGTAACACTTCAAGACAACTTTTGACCTTACTGGATCGTTCTGTTTTGGTAGAAAGGATCATTAGGATCATTCTCTGTAATTTTTTTAAAATATACACCAGTTTAATCCCGACTTCCAGGTCGAAAAGTTCCAAACATCATGGAGATCGCTTCTTCAAGTCAAACACCTTCGGAATCCCAATGGAAAACGTATGTGGATGCGAAGAAACGAAAATTCTATGTCAATCATGTGACAAAAGAAACACGATGGACAAAGCCGGACATTTTGAATAACAACAGCATTGAACCAATGACTCCAATCCATCAAAAGTTTGCGGACAGATCGGATTCTGCTAGAAATAGGTATTTGAAATATTTATTTCTAGAAGTAAGCGATTGCCAATTTCAGCTTCATAACTCCTCGAAGAACAATTGCTATAAGATCAGATGGATGTCCGAAAAATGATTTGATTCATTTTTTTAAACGAGATGAATTCAAAACTGCTCTTTACGAAAATCATGAAGCCATGAAAATCTATAACGAGTGTTCTGTAGTCCGACATGCTATTCATAGGATTCAAAAAGATTCTGATCCACCGGCAAAGTAAG</canonical>
            <polymorphic>TAGTGTTATCCTCCGTCATTAGACAAAGAGTTTGGAACTTGCTCCAATTCTCAATTTTTTTAAAGAGTATCATTCTGAAATCGAATGATTACGACTGAGATTTAAAATGACAGAGTCTTTTTTCTGTGAAAAATAATTCCTTTCTTTGTAAAGATGATAGCGTATAAATAATATTGGATTCTGTTGTTGGAAATGTACTGTAAAACCTGTAATAGTATTGCCCCCTCAATTTAAAATTTGCACCAATTTTCCTCGGTTCCTGCGAAAGATATAAAAAAGTTTTCAACAGATAAACTGTTTATCATAATGTCATAATGTTTTCCCAGTTGACAAATTTTCAATATCATGCATAAAAATCGAGATAATTGAGCTCAAGTGTAATGGCCTTCCATTACAGGTTCTAAGGTATTCCGGTAACACTTCAAGACAACTTTTGACCTTACTGGATCGTTCTGTTTTGGTAGAAAGGATCATTAGGATCATTCTCTGTAATTTTTTTWAAATATACACCAGTTTAATCCCGACTTCCAGGTCGAAAAGTTCCAAACATCATGGAGATCGCTTCTTCAAGTCAAACACCTTCGGAATCCCAATGGAAAACGTATGTGGATGCGAAGAAACGAAAATTCTATGTCAATCATGTGACAAAAGAAACACGATGGACAAAGCCGGACATTTTGAATAACAACAGCATTGAACCAATGACTCCAATCCATCAAAAGTTTGCGGACAGATCGGATTCTGCTAGAAATAGGTATTTGAAATATTTATTTCTAGAAGTAAGCGATTGCCAATTTCAGCTTCATAACTCCTCGAAGAACAATTGCTATAAGATCAGATGGATGTCCGAAAAATGATTTGATTCATTTTTTTAAACGAGATGAATTCAAAACTGCTCTTTACGAAAATCATGAAGCCATGAAAATCTATAACGAGTGTTCTGTAGTCCGACATGCTATTCATAGGATTCAAAAAGATTCTGATCCACCGGCAAAGTAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>374 267 129 127 61 42</canonical_bands>
                <polymorphic_bands>641 129 127 61 42</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>357 267 129 128 60 42 17</canonical_bands>
                <polymorphic_bands>357 284 129 128 60 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCGTTCTGTTTTGGTAGAAAG</pcr_primer_p1>
		<pcr_primer_p2>AATGCTGTTGTTATTCAAAATGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCGTTCTGTTTTGGTAGAAAGGATCATTAGGATCATTCTCTGTAATTTTTTTAAAATATACACCAGTTTAATCCCGACTTCCAGGTCGAAAAGTTCCAAACATCATGGAGATCGCTTCTTCAAGTCAAACACCTTCGGAATCCCAATGGAAAACGTATGTGGATGCGAAGAAACGAAAATTCTATGTCAATCATGTGACAAAAGAAACACGATGGACAAAGCCGGACATTTTGAATAACAACAGCATT</canonical_amplicon>
		<polymorphic_amplicon>ATCGTTCTGTTTTGGTAGAAAGGATCATTAGGATCATTCTCTGTAATTTTTTTWAAATATACACCAGTTTAATCCCGACTTCCAGGTCGAAAAGTTCCAAACATCATGGAGATCGCTTCTTCAAGTCAAACACCTTCGGAATCCCAATGGAAAACGTATGTGGATGCGAAGAAACGAAAATTCTATGTCAATCATGTGACAAAAGAAACACGATGGACAAAGCCGGACATTTTGAATAACAACAGCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12109</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>75111</contig_pos>
        <strand>+</strand>
        <context>TGCCGATGAT[G/T]TGTTTCCAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAGCATTTGGGTTGAAACCCAAATGCTGTAAATTTGAAAATGCCGATGAT</left_flank>
        <right_flank>TGTTTCCAGTGTAGAATTTCACTTAAGTATGCTAGGGTCGCAGAGATGTT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATCGAGTGATCAGAAAGGGCGCTGTTATTTTCCCTCCCATTCTGTTTCTTTCTTTTTTTTCCTTTTATTTTCTTTCCTTTCCACTGTTTCAGAATTTTTTCTTTCTTTCAAATCTTTAAAGCCCATACTAAAAGAATATTTCCACAAAATCCTTGCTCTCAAATGGATAAGAAAAACATTTGGGCGGTTAGACGGAAATGACGTGAATATTTCTTCAATATTTTTCTAAAAATTTGCACTGTAGAAATAGAAGAACGTCTCCAGAAGACGTCAGACACAAAATTTCGAAAGAGTAAATATTCGGGCATCATTTCGCTGCTAATCTGTGAAAATTTGGGAAAATTTGGTTCATTCTGGACTTCGTTAGGGAATGTGATACGGGAACAAACGGACACACACACTCACACACAGAATTTGGTGATTGTTAATAGTAAAGATGATGAGATTTAGCATTTGGGTTGAAACCCAAATGCTGTAAATTTGAAAATGCCGATGATGTGTTTCCAGTGTAGAATTTCACTTAAGTATGCTAGGGTCGCAGAGATGTTATATTTTTCTAGTCTCAATATTCAATCAGATCATTCAACAAATTCTATATTTTTACAGAAAATGTTGTCCCCGAGTTATTAAAGACTACTGAATCTTACTGGATACTCATTGGACTCGGTATTCAACGAAACCGGAAACGAAGCGGTATTGGATACGGAGTCTGTGCTTTCCACACTAAATTTGTCTGTTATATGTCTTTAATAAGTTTAATTCTGTTTTACTAGTTGCGTTATATTAATTCTATATACTATGCAGAACAAAAATTACAGTATGCAAAAATGGGCAGATCTTCAGCTCTGTATTTTGAAATGCCCCAAGACAAGACAACTAGGGCGTCGCTGGCAACTTTTGGACGGAGGTTGTTACGATTTAAAATAGGACCACTACTAAAGGCAGTCAATTTTTGACAAACTTATGAAGGCTCTGACCTAGTGGTAGTTTCAACTTTG</canonical>
            <polymorphic>AAATCGAGTGATCAGAAAGGGCGCTGTTATTTTCCCTCCCATTCTGTTTCTTTCTTTTTTTTCCTTTTATTTTCTTTCCTTTCCACTGTTTCAGAATTTTTTCTTTCTTTCAAATCTTTAAAGCCCATACTAAAAGAATATTTCCACAAAATCCTTGCTCTCAAATGGATAAGAAAAACATTTGGGCGGTTAGACGGAAATGACGTGAATATTTCTTCAATATTTTTCTAAAAATTTGCACTGTAGAAATAGAAGAACGTCTCCAGAAGACGTCAGACACAAAATTTCGAAAGAGTAAATATTCGGGCATCATTTCGCTGCTAATCTGTGAAAATTTGGGAAAATTTGGTTCATTCTGGACTTCGTTAGGGAATGTGATACGGGAACAAACGGACACACACACTCACACACAGAATTTGGTGATTGTTAATAGTAAAGATGATGAGATTTAGCATTTGGGTTGAAACCCAAATGCTGTAAATTTGAAAATGCCGATGATKTGTTTCCAGTGTAGAATTTCACTTAAGTATGCTAGGGTCGCAGAGATGTTATATTTTTCTAGTCTCAATATTCAATCAGATCATTCAACAAATTCTATATTTTTACAGAAAATGTTGTCCCCGAGTTATTAAAGACTACTGAATCTTACTGGATACTCATTGGACTCGGTATTCAACGAAACCGGAAACGAAGCGGTATTGGATACGGAGTCTGTGCTTTCCACACTAAATTTGTCTGTTATATGTCTTTAATAAGTTTAATTCTGTTTTACTAGTTGCGTTATATTAATTCTATATACTATGCAGAACAAAAATTACAGTATGCAAAAATGGGCAGATCTTCAGCTCTGTATTTTGAAATGCCCCAAGACAAGACAACTAGGGCGTCGCTGGCAACTTTTGGACGGAGGTTGTTACGATTTAAAATAGGACCACTACTAAAGGCAGTCAATTTTTGACAAACTTATGAAGGCTCTGACCTAGTGGTAGTTTCAACTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>209 195 80 75 61 61 51 51 47 39 33 19 15 12 10 10 9 7 4 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>209 195 89 75 61 61 51 51 47 39 33 19 15 12 10 10 7 4 2 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTAGCATTTGGGTTGAA</pcr_primer_p1>
		<pcr_primer_p2>AATACCGAGTCCAATGAGTATC</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>GATTTAGCATTTGGGTTGAAACCCAAATGCTGTAAATTTGAAAATGCCGATGATGTGTTTCCAGTGTAGAATTTCACTTAAGTATGCTAGGGTCGCAGAGATGTTATATTTTTCTAGTCTCAATATTCAATCAGATCATTCAACAAATTCTATATTTTTACAGAAAATGTTGTCCCCGAGTTATTAAAGACTACTGAATCTTACTGGATACTCATTGGACTCGGTATT</canonical_amplicon>
		<polymorphic_amplicon>GATTTAGCATTTGGGTTGAAACCCAAATGCTGTAAATTTGAAAATGCCGATGATKTGTTTCCAGTGTAGAATTTCACTTAAGTATGCTAGGGTCGCAGAGATGTTATATTTTTCTAGTCTCAATATTCAATCAGATCATTCAACAAATTCTATATTTTTACAGAAAATGTTGTCCCCGAGTTATTAAAGACTACTGAATCTTACTGGATACTCATTGGACTCGGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12110</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>97710</contig_pos>
        <strand>+</strand>
        <context>TTGAATAGTA[C/G]GAACTGATGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTTGTTCTTGGAGGAATTGGTGGGGCTGGAGCACTGGGTTGAATAGTA</left_flank>
        <right_flank>GAACTGATGATTGAAGTTTGGATCCGAATATAGAAAGGGAATCATCGAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCGCGTTGAGTGGGGCTCCAATGATTCTCCTCGCAGTACTGAAAAATAAACTTTTGGGAACATGTAGAATTCGCTCTCTCTGAAAATCGTACTTTTGTTTATCGTTAGTGGATGCTAAATCCAGAAGTCCCAGAACCACTTTCGAGATTTCCAAATGTGGTTCCCAATGTACAAATCCTCGTCCTAACAAATCGATTGCAGCTCTTCTCAACGGCGAATGGACTGGAATCAGATTCGAAGGAGCGGCAACCAGCAATTCGAGAAGAGAAACAGCTGTAGCACGTGTCAAATCTGCACGATTTAATTCGTCGCCAAACTCAGCTCCAATTACTCCAAGAAGTATGATTGAAGTTGCTTGATTACGGCGAACTTGTTGGATACCAGCTTCTCCTCCTTCTGCAGTTGGTGGTTCTGATCCTCGTACCGGTGTAACATCTGGTGGGGCATTTTTTGTTCTTGGAGGAATTGGTGGGGCTGGAGCACTGGGTTGAATAGTACGAACTGATGATTGAAGTTTGGATCCGAATATAGAAAGGGAATCATCGAGAAGCGGAGGAAGGAATGGAGTCCAAGATTCAATGAGACGACGACTGAACGATCAAATATTGGTTGTATAGAAAATAAAAACTTAATTACCGTCCATCAGCTCCTAATCTCGTCAGCTCTCGAATCAAAAGTGCCTGAGCTGCTTCTCGAATTTCCAAACAACTGTCTTGCCATCTTCTAACCAGCATCTCGATGCTCGGTGGCGCATAACTACTTCTTGGACGGACATGATCTGGCAGAAGGACGCAGTGGAGAGCAGCAACAAGACTCCATCCCTGTTTGACTTGTTGACGATCTGGATTTTGATGTCCCGAATTCATTTCCACAACACTCTTGCGAATCTTGCTATAAAAAATGAATCAGGTGCATTCTAAACTTTGAAGCTTACGCGAGCTGGAGCGCTGAGTTCTTCATTGCCATTAGCGTGTTAGATGTAGCAATAACTGCTAGAA</canonical>
            <polymorphic>TATCGCGTTGAGTGGGGCTCCAATGATTCTCCTCGCAGTACTGAAAAATAAACTTTTGGGAACATGTAGAATTCGCTCTCTCTGAAAATCGTACTTTTGTTTATCGTTAGTGGATGCTAAATCCAGAAGTCCCAGAACCACTTTCGAGATTTCCAAATGTGGTTCCCAATGTACAAATCCTCGTCCTAACAAATCGATTGCAGCTCTTCTCAACGGCGAATGGACTGGAATCAGATTCGAAGGAGCGGCAACCAGCAATTCGAGAAGAGAAACAGCTGTAGCACGTGTCAAATCTGCACGATTTAATTCGTCGCCAAACTCAGCTCCAATTACTCCAAGAAGTATGATTGAAGTTGCTTGATTACGGCGAACTTGTTGGATACCAGCTTCTCCTCCTTCTGCAGTTGGTGGTTCTGATCCTCGTACCGGTGTAACATCTGGTGGGGCATTTTTTGTTCTTGGAGGAATTGGTGGGGCTGGAGCACTGGGTTGAATAGTASGAACTGATGATTGAAGTTTGGATCCGAATATAGAAAGGGAATCATCGAGAAGCGGAGGAAGGAATGGAGTCCAAGATTCAATGAGACGACGACTGAACGATCAAATATTGGTTGTATAGAAAATAAAAACTTAATTACCGTCCATCAGCTCCTAATCTCGTCAGCTCTCGAATCAAAAGTGCCTGAGCTGCTTCTCGAATTTCCAAACAACTGTCTTGCCATCTTCTAACCAGCATCTCGATGCTCGGTGGCGCATAACTACTTCTTGGACGGACATGATCTGGCAGAAGGACGCAGTGGAGAGCAGCAACAAGACTCCATCCCTGTTTGACTTGTTGACGATCTGGATTTTGATGTCCCGAATTCATTTCCACAACACTCTTGCGAATCTTGCTATAAAAAATGAATCAGGTGCATTCTAAACTTTGAAGCTTACGCGAGCTGGAGCGCTGAGTTCTTCATTGCCATTAGCGTGTTAGATGTAGCAATAACTGCTAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 252 80 74 53 39</canonical_bands>
                <polymorphic_bands>576 252 80 53 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCAAGAAGTATGATTGAAGTTG</pcr_primer_p1>
		<pcr_primer_p2>ATTGAATCTTGGACTCCATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCAAGAAGTATGATTGAAGTTGCTTGATTACGGCGAACTTGTTGGATACCAGCTTCTCCTCCTTCTGCAGTTGGTGGTTCTGATCCTCGTACCGGTGTAACATCTGGTGGGGCATTTTTTGTTCTTGGAGGAATTGGTGGGGCTGGAGCACTGGGTTGAATAGTACGAACTGATGATTGAAGTTTGGATCCGAATATAGAAAGGGAATCATCGAGAAGCGGAGGAAGGAATGGAGTCCAAGATTCAAT</canonical_amplicon>
		<polymorphic_amplicon>TCCAAGAAGTATGATTGAAGTTGCTTGATTACGGCGAACTTGTTGGATACCAGCTTCTCCTCCTTCTGCAGTTGGTGGTTCTGATCCTCGTACCGGTGTAACATCTGGTGGGGCATTTTTTGTTCTTGGAGGAATTGGTGGGGCTGGAGCACTGGGTTGAATAGTASGAACTGATGATTGAAGTTTGGATCCGAATATAGAAAGGGAATCATCGAGAAGCGGAGGAAGGAATGGAGTCCAAGATTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12111</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>150833</contig_pos>
        <strand>+</strand>
        <context>CTCCGGTGTG[A/C]TCATTGAGCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAGGAGGACGTAAAGTGGGCTTAGACTCTCTCTGTCTCTGCTCCGGTGTG</left_flank>
        <right_flank>TCATTGAGCCACATTCTATTACACAGTGAGTGCCTGCAGACTGATGAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCATGCCATGAACTTTTTGATTACCTCAGCGTCTCTTCTGTAAAATAATGTTACTAGTAAAACTATGAGAATCCAACAACGTACACAGAATCTGATAGTCGTTTATCAGTGTCACTGACTCTTGCTTGGAGGCTTGAGACTTCATCGAGTATTCGTCGAATTGCAGAATGTTCTTTCCAAAGATCAACGATACTCGATGGTGGAGGACGACTGAGTGTCTGTTCGAACAATGTTGCTATTTCTGAATAATAAGTTTACTTTTAGTCCTCTGTTAATTAAAATGACCAACTTCCTAGAATCTGGTCTTCCAGTTCGCCATCCGGAGTTGGTGCCATTGCTAATTAAGTGAAAGTTGGATTCCGAATAAAGATACGAAAGATGAAGTTGAAAACGAAAATTTCAAGATAATGAAAGAACGAGAGATGATAGAACGGGGGTAAAAGTGACCAGAGGAGGACGTAAAGTGGGCTTAGACTCTCTCTGTCTCTGCTCCGGTGTGATCATTGAGCCACATTCTATTACACAGTGAGTGCCTGCAGACTGATGAGTTCCTACTACCCGCCCGCCAACGCACTTATGCCAAAATATCGGTGGAAGAGAAATCTCGGTGGAAGAGAATATGAAAATATCGGTGGAAGAGAATATGAATTGTGAAAAAATGAAAATGATGGGTGATACGGATTCTTCGTAGGAAATAAGGATTCGGTAGCTACAACTAACTGTAAGACAATATTTTCTTTAAAGCTAGAACGTTGGGCGTTTTTTTTTCCAGTCTTAGTTTGGCACAGACGAACGTCCAAAAACGAAACTACCGTAACCTAAAAATATGTTATTTCCGGAATTTTTTCTCGATTTTCCTGCGTTTTCAGTCAATTTTGTTTTTTCACTATCGAAAATGTTTATGTTCCTACTTGTCTGGGGAAAAATAACAGAAAACTCGCCAAAAAGCACCAAAAAACAAGATCATAAATCCTGAAAACAGAAATGTCTCAGGTTGCGA</canonical>
            <polymorphic>CCATGCCATGAACTTTTTGATTACCTCAGCGTCTCTTCTGTAAAATAATGTTACTAGTAAAACTATGAGAATCCAACAACGTACACAGAATCTGATAGTCGTTTATCAGTGTCACTGACTCTTGCTTGGAGGCTTGAGACTTCATCGAGTATTCGTCGAATTGCAGAATGTTCTTTCCAAAGATCAACGATACTCGATGGTGGAGGACGACTGAGTGTCTGTTCGAACAATGTTGCTATTTCTGAATAATAAGTTTACTTTTAGTCCTCTGTTAATTAAAATGACCAACTTCCTAGAATCTGGTCTTCCAGTTCGCCATCCGGAGTTGGTGCCATTGCTAATTAAGTGAAAGTTGGATTCCGAATAAAGATACGAAAGATGAAGTTGAAAACGAAAATTTCAAGATAATGAAAGAACGAGAGATGATAGAACGGGGGTAAAAGTGACCAGAGGAGGACGTAAAGTGGGCTTAGACTCTCTCTGTCTCTGCTCCGGTGTGMTCATTGAGCCACATTCTATTACACAGTGAGTGCCTGCAGACTGATGAGTTCCTACTACCCGCCCGCCAACGCACTTATGCCAAAATATCGGTGGAAGAGAAATCTCGGTGGAAGAGAATATGAAAATATCGGTGGAAGAGAATATGAATTGTGAAAAAATGAAAATGATGGGTGATACGGATTCTTCGTAGGAAATAAGGATTCGGTAGCTACAACTAACTGTAAGACAATATTTTCTTTAAAGCTAGAACGTTGGGCGTTTTTTTTTCCAGTCTTAGTTTGGCACAGACGAACGTCCAAAAACGAAACTACCGTAACCTAAAAATATGTTATTTCCGGAATTTTTTCTCGATTTTCCTGCGTTTTCAGTCAATTTTGTTTTTTCACTATCGAAAATGTTTATGTTCCTACTTGTCTGGGGAAAAATAACAGAAAACTCGCCAAAAAGCACCAAAAAACAAGATCATAAATCCTGAAAACAGAAATGTCTCAGGTTGCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>463 317 181 39</canonical_bands>
                <polymorphic_bands>780 181 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAAAGAACGAGAGATGATAGA</pcr_primer_p1>
		<pcr_primer_p2>TCACAATTCATATTCTCTTCCAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATGAAAGAACGAGAGATGATAGAACGGGGGTAAAAGTGACCAGAGGAGGACGTAAAGTGGGCTTAGACTCTCTCTGTCTCTGCTCCGGTGTGATCATTGAGCCACATTCTATTACACAGTGAGTGCCTGCAGACTGATGAGTTCCTACTACCCGCCCGCCAACGCACTTATGCCAAAATATCGGTGGAAGAGAAATCTCGGTGGAAGAGAATATGAAAATATCGGTGGAAGAGAATATGAATTGTGA</canonical_amplicon>
		<polymorphic_amplicon>ATGAAAGAACGAGAGATGATAGAACGGGGGTAAAAGTGACCAGAGGAGGACGTAAAGTGGGCTTAGACTCTCTCTGTCTCTGCTCCGGTGTGMTCATTGAGCCACATTCTATTACACAGTGAGTGCCTGCAGACTGATGAGTTCCTACTACCCGCCCGCCAACGCACTTATGCCAAAATATCGGTGGAAGAGAAATCTCGGTGGAAGAGAATATGAAAATATCGGTGGAAGAGAATATGAATTGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12112</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>152610</contig_pos>
        <strand>+</strand>
        <context>GTACTACCGT[A/C]ATTCTGCATC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATAGGAGTACCAAATTCGTGGTAGTTTTCATGTCCTACCGTACTACCGT</left_flank>
        <right_flank>ATTCTGCATCTGTTTTTTCTCAACATCAACATCTTATTATAGTTTACCGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTGCACAGTTATCGAAAAAGTCCAGATCATATGAGAACGACAAAATTGATAAACTCAGTGCGATGGCAGAATTTGGCCTGAAGTAAAAATGGAATTCATGATTTTCACAATAGTTTCTTTTCAGAGAATCGGACCTTGAAGATCTTCCTAGTCATAGCAAACCGACAATCAGTCATTCGCACCATCAGAATATGAACAAAAATAGTCACCAACTGTATGCACTAACAGAAGTTTATCACAAAGCTCTAAAAGTTCATGGAAGTTCGGAACCCTCGAAGCTCATCGACGACCATTAGTGGCGATGAGGAAAGAGTTGACAGATGCGGAAAGGATGAGAATGAGAATGAGAGTAGAAACAACGAACCAACATAAAGGGGCAGATAGAGTTGTTGCCATCGCTTTCACACTCAATTTATGTGATATGGCAATGAAGGTAAGAACAACTAAATAGGAGTACCAAATTCGTGGTAGTTTTCATGTCCTACCGTACTACCGTCATTCTGCATCTGTTTTTTCTCAACATCAACATCTTATTATAGTTTACCGCTGCATATTTGACTGGATCCAAATCTCTGTTTGCCGAAGCGATTCACAGTGCAATGGACACTTGCAATCAGTTGATTCTGCTGCTGGGAATACGATATTCTGCTAAAAATCCAGACCTACTTTTTCCCTACGGATACGGTACATTAACTCATAGCAATCATATTTTTTGTTTCCGATTCCAGGTAACATGCGATATGTTACATCTCTCATTTCTGGATGTGGAATTATGGCGTTCGGATGCGGACTGTCGATGTATCACGGAATAAGCGGCCTTCTCCATCCGGAACCACTCGAACCGTTAACCTATGTAAGAAACTACGTAGAGATGAAAATAATTTCTATTTTTAGGCTTACTACGCATTGTTCATGTCACTCTGCTTTCAAGGCGCATCTGCCATCACTGCATACCGAGAAGTTTTCGCTAAAGCCAGAAAAGCGAAAATCAGCTTGT</canonical>
            <polymorphic>AAGTTGCACAGTTATCGAAAAAGTCCAGATCATATGAGAACGACAAAATTGATAAACTCAGTGCGATGGCAGAATTTGGCCTGAAGTAAAAATGGAATTCATGATTTTCACAATAGTTTCTTTTCAGAGAATCGGACCTTGAAGATCTTCCTAGTCATAGCAAACCGACAATCAGTCATTCGCACCATCAGAATATGAACAAAAATAGTCACCAACTGTATGCACTAACAGAAGTTTATCACAAAGCTCTAAAAGTTCATGGAAGTTCGGAACCCTCGAAGCTCATCGACGACCATTAGTGGCGATGAGGAAAGAGTTGACAGATGCGGAAAGGATGAGAATGAGAATGAGAGTAGAAACAACGAACCAACATAAAGGGGCAGATAGAGTTGTTGCCATCGCTTTCACACTCAATTTATGTGATATGGCAATGAAGGTAAGAACAACTAAATAGGAGTACCAAATTCGTGGTAGTTTTCATGTCCTACCGTACTACCGTMATTCTGCATCTGTTTTTTCTCAACATCAACATCTTATTATAGTTTACCGCTGCATATTTGACTGGATCCAAATCTCTGTTTGCCGAAGCGATTCACAGTGCAATGGACACTTGCAATCAGTTGATTCTGCTGCTGGGAATACGATATTCTGCTAAAAATCCAGACCTACTTTTTCCCTACGGATACGGTACATTAACTCATAGCAATCATATTTTTTGTTTCCGATTCCAGGTAACATGCGATATGTTACATCTCTCATTTCTGGATGTGGAATTATGGCGTTCGGATGCGGACTGTCGATGTATCACGGAATAAGCGGCCTTCTCCATCCGGAACCACTCGAACCGTTAACCTATGTAAGAAACTACGTAGAGATGAAAATAATTTCTATTTTTAGGCTTACTACGCATTGTTCATGTCACTCTGCTTTCAAGGCGCATCTGCCATCACTGCATACCGAGAAGTTTTCGCTAAAGCCAGAAAAGCGAAAATCAGCTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAATGAAGGTAAGAACAACTAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAGTAGGTCTGGATTTTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GCAATGAAGGTAAGAACAACTAAATAGGAGTACCAAATTCGTGGTAGTTTTCATGTCCTACCGTACTACCGTCATTCTGCATCTGTTTTTTCTCAACATCAACATCTTATTATAGTTTACCGCTGCATATTTGACTGGATCCAAATCTCTGTTTGCCGAAGCGATTCACAGTGCAATGGACACTTGCAATCAGTTGATTCTGCTGCTGGGAATACGATATTCTGCTAAAAATCCAGACCTACTTTT</canonical_amplicon>
		<polymorphic_amplicon>GCAATGAAGGTAAGAACAACTAAATAGGAGTACCAAATTCGTGGTAGTTTTCATGTCCTACCGTACTACCGTMATTCTGCATCTGTTTTTTCTCAACATCAACATCTTATTATAGTTTACCGCTGCATATTTGACTGGATCCAAATCTCTGTTTGCCGAAGCGATTCACAGTGCAATGGACACTTGCAATCAGTTGATTCTGCTGCTGGGAATACGATATTCTGCTAAAAATCCAGACCTACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12113</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>192227</contig_pos>
        <strand>+</strand>
        <context>TCAGAATTCA[A/G]AAATCTACTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGTTATACAGTAATCACGAATGTTTCAAAGAAAATACAGTCAGAATTCA</left_flank>
        <right_flank>AAATCTACTGTAGTTCTTAAAAATGGAAATTTCCAAGAACTATGTAGATT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGTTGTGAACTTAGGTTGGAGTTTCCGGTCGAGACCTATATCATTCGAAAGCGGAGGACACGTCTTTTCCGAGTCTGTTTTTCGTTTTTGCTGCGGACCTACCAGTTTCGAGAAAAATTAGTTTTAAATTTAGACCACTGAGCCATTCAATCGACATTTTCTATTGTTTCAATTGTATTTAAGGATTTAGTGTTCACGCGATCCAAAATTCCCATTTTAATTGAAGAAATCAGTAAAAAATCCAGAGTAACCCAAATTCAAAACCTATTTTTCTCGAAACTGGTAGGTCCGCAGCGAAAACGGAAAACAGGTTCGGAAAGGGTGTGTTCTCAGCTTTCGAATGACAACCTTTCGCTTTCGAATCTCGACCCGAAATTCCAACCTAAGTTCACAACCTTCCCTAGTAAGGATTACTGCAGATTTTGGAGTTTCTTTAACTATAGTTATATGTTATACAGTAATCACGAATGTTTCAAAGAAAATACAGTCAGAATTCAAAAATCTACTGTAGTTCTTAAAAATGGAAATTTCCAAGAACTATGTAGATTACTGTAGATTTTGAATTTTTTTTCAATTTACGAATTTTTATGATTACAGTGAGAATGAACAGTTGATTATTGTAGTATTTTTGTAGGTTTTCTAACAATTTTCCAACTTGATTATTGTAGTTCAGACTACTGTAGCTCTATAGTACAAAAACCTCCAATCGAAAAACCTACAATAATCCTTAAAAATGTAATCTCTCACTTGGGTGTAAAGCAACGGGTCAGAAATTGCGCCCCAGTAGTAAACGTGAGATTTTAGAAAAAAAAATCGCTTCTGAATTATCTGAGGGTTTTAAAAATTACGCGTTGCAACTCGTTGATTGGAGCGCGTTTTTGACCCGTTGCCTTGGACCCAAGTGAGAAAAATATTTTTATAGACAAAAAGTTTCAAGGTTCTTCGAAGATTGAGCTGTTTTCGCTGCTCAGCCAAGTTGTGGCTTCAGCCGACGATAA</canonical>
            <polymorphic>AAGGTTGTGAACTTAGGTTGGAGTTTCCGGTCGAGACCTATATCATTCGAAAGCGGAGGACACGTCTTTTCCGAGTCTGTTTTTCGTTTTTGCTGCGGACCTACCAGTTTCGAGAAAAATTAGTTTTAAATTTAGACCACTGAGCCATTCAATCGACATTTTCTATTGTTTCAATTGTATTTAAGGATTTAGTGTTCACGCGATCCAAAATTCCCATTTTAATTGAAGAAATCAGTAAAAAATCCAGAGTAACCCAAATTCAAAACCTATTTTTCTCGAAACTGGTAGGTCCGCAGCGAAAACGGAAAACAGGTTCGGAAAGGGTGTGTTCTCAGCTTTCGAATGACAACCTTTCGCTTTCGAATCTCGACCCGAAATTCCAACCTAAGTTCACAACCTTCCCTAGTAAGGATTACTGCAGATTTTGGAGTTTCTTTAACTATAGTTATATGTTATACAGTAATCACGAATGTTTCAAAGAAAATACAGTCAGAATTCARAAATCTACTGTAGTTCTTAAAAATGGAAATTTCCAAGAACTATGTAGATTACTGTAGATTTTGAATTTTTTTTCAATTTACGAATTTTTATGATTACAGTGAGAATGAACAGTTGATTATTGTAGTATTTTTGTAGGTTTTCTAACAATTTTCCAACTTGATTATTGTAGTTCAGACTACTGTAGCTCTATAGTACAAAAACCTCCAATCGAAAAACCTACAATAATCCTTAAAAATGTAATCTCTCACTTGGGTGTAAAGCAACGGGTCAGAAATTGCGCCCCAGTAGTAAACGTGAGATTTTAGAAAAAAAAATCGCTTCTGAATTATCTGAGGGTTTTAAAAATTACGCGTTGCAACTCGTTGATTGGAGCGCGTTTTTGACCCGTTGCCTTGGACCCAAGTGAGAAAAATATTTTTATAGACAAAAAGTTTCAAGGTTCTTCGAAGATTGAGCTGTTTTCGCTGCTCAGCCAAGTTGTGGCTTCAGCCGACGATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTACTGCAGATTTTGGAGTTT</pcr_primer_p1>
		<pcr_primer_p2>CAAGTTGGAAAATTGTTAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTACTGCAGATTTTGGAGTTTCTTTAACTATAGTTATATGTTATACAGTAATCACGAATGTTTCAAAGAAAATACAGTCAGAATTCAAAAATCTACTGTAGTTCTTAAAAATGGAAATTTCCAAGAACTATGTAGATTACTGTAGATTTTGAATTTTTTTTCAATTTACGAATTTTTATGATTACAGTGAGAATGAACAGTTGATTATTGTAGTATTTTTGTAGGTTTTCTAACAATTTTCCAACTTG</canonical_amplicon>
		<polymorphic_amplicon>ATTACTGCAGATTTTGGAGTTTCTTTAACTATAGTTATATGTTATACAGTAATCACGAATGTTTCAAAGAAAATACAGTCAGAATTCARAAATCTACTGTAGTTCTTAAAAATGGAAATTTCCAAGAACTATGTAGATTACTGTAGATTTTGAATTTTTTTTCAATTTACGAATTTTTATGATTACAGTGAGAATGAACAGTTGATTATTGTAGTATTTTTGTAGGTTTTCTAACAATTTTCCAACTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12114</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>192307</contig_pos>
        <strand></strand>
        <context>TTTTCAATTT[A/T]CGAATTTTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCCAAGAACTATGTAGATTACTGTAGATTTTGAATTTTTTTTCAATTT</left_flank>
        <right_flank>CGAATTTTTATGATTACAGTGAGAATGAACAGTTGATTATTGTAGTATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCGTTTTTGCTGCGGACCTACCAGTTTCGAGAAAAATTAGTTTTAAATTTAGACCACTGAGCCATTCAATCGACATTTTCTATTGTTTCAATTGTATTTAAGGATTTAGTGTTCACGCGATCCAAAATTCCCATTTTAATTGAAGAAATCAGTAAAAAATCCAGAGTAACCCAAATTCAAAACCTATTTTTCTCGAAACTGGTAGGTCCGCAGCGAAAACGGAAAACAGGTTCGGAAAGGGTGTGTTCTCAGCTTTCGAATGACAACCTTTCGCTTTCGAATCTCGACCCGAAATTCCAACCTAAGTTCACAACCTTCCCTAGTAAGGATTACTGCAGATTTTGGAGTTTCTTTAACTATAGTTATATGTTATACAGTAATCACGAATGTTTCAAAGAAAATACAGTCAGAATTCAAAAATCTACTGTAGTTCTTAAAAATGGAAATTTCCAAGAACTATGTAGATTACTGTAGATTTTGAATTTTTTTTCAATTTACGAATTTTTATGATTACAGTGAGAATGAACAGTTGATTATTGTAGTATTTTTGTAGGTTTTCTAACAATTTTCCAACTTGATTATTGTAGTTCAGACTACTGTAGCTCTATAGTACAAAAACCTCCAATCGAAAAACCTACAATAATCCTTAAAAATGTAATCTCTCACTTGGGTGTAAAGCAACGGGTCAGAAATTGCGCCCCAGTAGTAAACGTGAGATTTTAGAAAAAAAAATCGCTTCTGAATTATCTGAGGGTTTTAAAAATTACGCGTTGCAACTCGTTGATTGGAGCGCGTTTTTGACCCGTTGCCTTGGACCCAAGTGAGAAAAATATTTTTATAGACAAAAAGTTTCAAGGTTCTTCGAAGATTGAGCTGTTTTCGCTGCTCAGCCAAGTTGTGGCTTCAGCCGACGATAATTTTTTCTATGTTTCGCAACTTACATCCACCGTAGCGGCCATCCAGTCAGCCGAAACGGGCCCACAATTCCAGCGTCCTG</canonical>
            <polymorphic>TTTTCGTTTTTGCTGCGGACCTACCAGTTTCGAGAAAAATTAGTTTTAAATTTAGACCACTGAGCCATTCAATCGACATTTTCTATTGTTTCAATTGTATTTAAGGATTTAGTGTTCACGCGATCCAAAATTCCCATTTTAATTGAAGAAATCAGTAAAAAATCCAGAGTAACCCAAATTCAAAACCTATTTTTCTCGAAACTGGTAGGTCCGCAGCGAAAACGGAAAACAGGTTCGGAAAGGGTGTGTTCTCAGCTTTCGAATGACAACCTTTCGCTTTCGAATCTCGACCCGAAATTCCAACCTAAGTTCACAACCTTCCCTAGTAAGGATTACTGCAGATTTTGGAGTTTCTTTAACTATAGTTATATGTTATACAGTAATCACGAATGTTTCAAAGAAAATACAGTCAGAATTCAAAAATCTACTGTAGTTCTTAAAAATGGAAATTTCCAAGAACTATGTAGATTACTGTAGATTTTGAATTTTTTTTCAATTTWCGAATTTTTATGATTACAGTGAGAATGAACAGTTGATTATTGTAGTATTTTTGTAGGTTTTCTAACAATTTTCCAACTTGATTATTGTAGTTCAGACTACTGTAGCTCTATAGTACAAAAACCTCCAATCGAAAAACCTACAATAATCCTTAAAAATGTAATCTCTCACTTGGGTGTAAAGCAACGGGTCAGAAATTGCGCCCCAGTAGTAAACGTGAGATTTTAGAAAAAAAAATCGCTTCTGAATTATCTGAGGGTTTTAAAAATTACGCGTTGCAACTCGTTGATTGGAGCGCGTTTTTGACCCGTTGCCTTGGACCCAAGTGAGAAAAATATTTTTATAGACAAAAAGTTTCAAGGTTCTTCGAAGATTGAGCTGTTTTCGCTGCTCAGCCAAGTTGTGGCTTCAGCCGACGATAATTTTTTCTATGTTTCGCAACTTACATCCACCGTAGCGGCCATCCAGTCAGCCGAAACGGGCCCACAATTCCAGCGTCCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTACTGCAGATTTTGGAGTTT</pcr_primer_p1>
		<pcr_primer_p2>CAAGTTGGAAAATTGTTAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTACTGCAGATTTTGGAGTTTCTTTAACTATAGTTATATGTTATACAGTAATCACGAATGTTTCAAAGAAAATACAGTCAGAATTCAAAAATCTACTGTAGTTCTTAAAAATGGAAATTTCCAAGAACTATGTAGATTACTGTAGATTTTGAATTTTTTTTCAATTTACGAATTTTTATGATTACAGTGAGAATGAACAGTTGATTATTGTAGTATTTTTGTAGGTTTTCTAACAATTTTCCAACTTG</canonical_amplicon>
		<polymorphic_amplicon>ATTACTGCAGATTTTGGAGTTTCTTTAACTATAGTTATATGTTATACAGTAATCACGAATGTTTCAAAGAAAATACAGTCAGAATTCAAAAATCTACTGTAGTTCTTAAAAATGGAAATTTCCAAGAACTATGTAGATTACTGTAGATTTTGAATTTTTTTTCAATTTWCGAATTTTTATGATTACAGTGAGAATGAACAGTTGATTATTGTAGTATTTTTGTAGGTTTTCTAACAATTTTCCAACTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12115</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>193755</contig_pos>
        <strand>+</strand>
        <context>TCCACCGACA[G/T]CAGTCATCGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCCACCAACAGCGGTCATTGTGGAAGCTCCACGTGGTGCTCCACCGACA</left_flank>
        <right_flank>CAGTCATCGTCGATGCTCCAGATGGTGCTCCTCCAACGGCAGTCATGGTA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATACACTGATTGTCCCGGGATTCCTCCACCGCCTCCTGTAATGGAATTTCAGAATTTCGGATCAAATACTCAACTACTCAATTACCTCCAGTCTTGGCTCCACCACCACCTCCAGCTGGTCCTCCTCCAACTCCGAAGTATGCCGACTGTCCAGCGGCTCCACCTCCACCCATCACTCCTTGTCCGACACCGAAGTATCCGGATGTGGCTCCACCGCCACCACCTCCTCCCATAGATCCAGCTGGGGCAGCTCCGAGAGCGGAAGCTCCACCTCCTCCAGCAGCAACTCCGACAGCAGTCATGGTGCTTGGTCCTCCTGCTGGGGCTCCTCCAACAGCTGTCATAGTGGAAGCTCCTCTTGGGGCTCCTCCAACGGCAGTCATTGTTGAGGCTCCGGATGGGGCTCCTCCGACAGCAGTCATTGTAGAGGCACCTCCTCCCATTGGGGCTCCACCAACAGCGGTCATTGTGGAAGCTCCACGTGGTGCTCCACCGACAGCAGTCATCGTCGATGCTCCAGATGGTGCTCCTCCAACGGCAGTCATGGTAGAGGCTCCAGATGGAGTTCCTCCCACAGCTGTCATGGTGGAAGCTCCGGATGGGGCTCCTCCGATTGCAGTCATAGTTGATGTTCCTGCAAGTAAAACATTTTAACTACGGAACAAATTCAAAATACCCATTACCTCCCATTGGTGCTCCTCCGACAGCAGTCATGGTACTGGCTCCACGTGGTGCTCCTCCAATGGCGGTCATGGTGGAAGCTCCAGATGGGGCTCCACCAACAGCAGTCATTGGGGAAGCTCCAGATGGAACACCTCCAACGGCAGTCATGGTCGAAGCTCCAGATGGGGCTCCTCCGACGGCAGTCATTGTTGAGGCTCCGGTTGGGGCTCCACCCACAGCAGTCATGGTGGAAGCTCCAGTTGGGGCTCCTCCAACGGCGGTCATAGTACTAGCTCCTCTTGGTGCTCCTCCAACTGCGGTCATTGTCGATGCTCC</canonical>
            <polymorphic>TATACACTGATTGTCCCGGGATTCCTCCACCGCCTCCTGTAATGGAATTTCAGAATTTCGGATCAAATACTCAACTACTCAATTACCTCCAGTCTTGGCTCCACCACCACCTCCAGCTGGTCCTCCTCCAACTCCGAAGTATGCCGACTGTCCAGCGGCTCCACCTCCACCCATCACTCCTTGTCCGACACCGAAGTATCCGGATGTGGCTCCACCGCCACCACCTCCTCCCATAGATCCAGCTGGGGCAGCTCCGAGAGCGGAAGCTCCACCTCCTCCAGCAGCAACTCCGACAGCAGTCATGGTGCTTGGTCCTCCTGCTGGGGCTCCTCCAACAGCTGTCATAGTGGAAGCTCCTCTTGGGGCTCCTCCAACGGCAGTCATTGTTGAGGCTCCGGATGGGGCTCCTCCGACAGCAGTCATTGTAGAGGCACCTCCTCCCATTGGGGCTCCACCAACAGCGGTCATTGTGGAAGCTCCACGTGGTGCTCCACCGACAKCAGTCATCGTCGATGCTCCAGATGGTGCTCCTCCAACGGCAGTCATGGTAGAGGCTCCAGATGGAGTTCCTCCCACAGCTGTCATGGTGGAAGCTCCGGATGGGGCTCCTCCGATTGCAGTCATAGTTGATGTTCCTGCAAGTAAAACATTTTAACTACGGAACAAATTCAAAATACCCATTACCTCCCATTGGTGCTCCTCCGACAGCAGTCATGGTACTGGCTCCACGTGGTGCTCCTCCAATGGCGGTCATGGTGGAAGCTCCAGATGGGGCTCCACCAACAGCAGTCATTGGGGAAGCTCCAGATGGAACACCTCCAACGGCAGTCATGGTCGAAGCTCCAGATGGGGCTCCTCCGACGGCAGTCATTGTTGAGGCTCCGGTTGGGGCTCCACCCACAGCAGTCATGGTGGAAGCTCCAGTTGGGGCTCCTCCAACGGCGGTCATAGTACTAGCTCCTCTTGGTGCTCCTCCAACTGCGGTCATTGTCGATGCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGACAGCAGTCATTGTAGAG</pcr_primer_p1>
		<pcr_primer_p2>TAAAATGTTTTACTTGCAGGAAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CGACAGCAGTCATTGTAGAGGCACCTCCTCCCATTGGGGCTCCACCAACAGCGGTCATTGTGGAAGCTCCACGTGGTGCTCCACCGACAGCAGTCATCGTCGATGCTCCAGATGGTGCTCCTCCAACGGCAGTCATGGTAGAGGCTCCAGATGGAGTTCCTCCCACAGCTGTCATGGTGGAAGCTCCGGATGGGGCTCCTCCGATTGCAGTCATAGTTGATGTTCCTGCAAGTAAAACATTTTA</canonical_amplicon>
		<polymorphic_amplicon>CGACAGCAGTCATTGTAGAGGCACCTCCTCCCATTGGGGCTCCACCAACAGCGGTCATTGTGGAAGCTCCACGTGGTGCTCCACCGACAKCAGTCATCGTCGATGCTCCAGATGGTGCTCCTCCAACGGCAGTCATGGTAGAGGCTCCAGATGGAGTTCCTCCCACAGCTGTCATGGTGGAAGCTCCGGATGGGGCTCCTCCGATTGCAGTCATAGTTGATGTTCCTGCAAGTAAAACATTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12116</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>193822</contig_pos>
        <strand>+</strand>
        <context>CCAGATGGAG[C/T]TCCTCCCACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCAGATGGTGCTCCTCCAACGGCAGTCATGGTAGAGGCTCCAGATGGAG</left_flank>
        <right_flank>TCCTCCCACAGCTGTCATGGTGGAAGCTCCGGATGGGGCTCCTCCGATTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTCAACTACTCAATTACCTCCAGTCTTGGCTCCACCACCACCTCCAGCTGGTCCTCCTCCAACTCCGAAGTATGCCGACTGTCCAGCGGCTCCACCTCCACCCATCACTCCTTGTCCGACACCGAAGTATCCGGATGTGGCTCCACCGCCACCACCTCCTCCCATAGATCCAGCTGGGGCAGCTCCGAGAGCGGAAGCTCCACCTCCTCCAGCAGCAACTCCGACAGCAGTCATGGTGCTTGGTCCTCCTGCTGGGGCTCCTCCAACAGCTGTCATAGTGGAAGCTCCTCTTGGGGCTCCTCCAACGGCAGTCATTGTTGAGGCTCCGGATGGGGCTCCTCCGACAGCAGTCATTGTAGAGGCACCTCCTCCCATTGGGGCTCCACCAACAGCGGTCATTGTGGAAGCTCCACGTGGTGCTCCACCGACAGCAGTCATCGTCGATGCTCCAGATGGTGCTCCTCCAACGGCAGTCATGGTAGAGGCTCCAGATGGAGTTCCTCCCACAGCTGTCATGGTGGAAGCTCCGGATGGGGCTCCTCCGATTGCAGTCATAGTTGATGTTCCTGCAAGTAAAACATTTTAACTACGGAACAAATTCAAAATACCCATTACCTCCCATTGGTGCTCCTCCGACAGCAGTCATGGTACTGGCTCCACGTGGTGCTCCTCCAATGGCGGTCATGGTGGAAGCTCCAGATGGGGCTCCACCAACAGCAGTCATTGGGGAAGCTCCAGATGGAACACCTCCAACGGCAGTCATGGTCGAAGCTCCAGATGGGGCTCCTCCGACGGCAGTCATTGTTGAGGCTCCGGTTGGGGCTCCACCCACAGCAGTCATGGTGGAAGCTCCAGTTGGGGCTCCTCCAACGGCGGTCATAGTACTAGCTCCTCTTGGTGCTCCTCCAACTGCGGTCATTGTCGATGCTCCAGATGGTGCTCCTCCGAGAGCTGTCATTGTTGATGCTCCGCCACCAGCAGCGGCTGAAACATTTAAA</canonical>
            <polymorphic>TACTCAACTACTCAATTACCTCCAGTCTTGGCTCCACCACCACCTCCAGCTGGTCCTCCTCCAACTCCGAAGTATGCCGACTGTCCAGCGGCTCCACCTCCACCCATCACTCCTTGTCCGACACCGAAGTATCCGGATGTGGCTCCACCGCCACCACCTCCTCCCATAGATCCAGCTGGGGCAGCTCCGAGAGCGGAAGCTCCACCTCCTCCAGCAGCAACTCCGACAGCAGTCATGGTGCTTGGTCCTCCTGCTGGGGCTCCTCCAACAGCTGTCATAGTGGAAGCTCCTCTTGGGGCTCCTCCAACGGCAGTCATTGTTGAGGCTCCGGATGGGGCTCCTCCGACAGCAGTCATTGTAGAGGCACCTCCTCCCATTGGGGCTCCACCAACAGCGGTCATTGTGGAAGCTCCACGTGGTGCTCCACCGACAGCAGTCATCGTCGATGCTCCAGATGGTGCTCCTCCAACGGCAGTCATGGTAGAGGCTCCAGATGGAGYTCCTCCCACAGCTGTCATGGTGGAAGCTCCGGATGGGGCTCCTCCGATTGCAGTCATAGTTGATGTTCCTGCAAGTAAAACATTTTAACTACGGAACAAATTCAAAATACCCATTACCTCCCATTGGTGCTCCTCCGACAGCAGTCATGGTACTGGCTCCACGTGGTGCTCCTCCAATGGCGGTCATGGTGGAAGCTCCAGATGGGGCTCCACCAACAGCAGTCATTGGGGAAGCTCCAGATGGAACACCTCCAACGGCAGTCATGGTCGAAGCTCCAGATGGGGCTCCTCCGACGGCAGTCATTGTTGAGGCTCCGGTTGGGGCTCCACCCACAGCAGTCATGGTGGAAGCTCCAGTTGGGGCTCCTCCAACGGCGGTCATAGTACTAGCTCCTCTTGGTGCTCCTCCAACTGCGGTCATTGTCGATGCTCCAGATGGTGCTCCTCCGAGAGCTGTCATTGTTGATGCTCCGCCACCAGCAGCGGCTGAAACATTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGACAGCAGTCATTGTAGAG</pcr_primer_p1>
		<pcr_primer_p2>TAAAATGTTTTACTTGCAGGAAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CGACAGCAGTCATTGTAGAGGCACCTCCTCCCATTGGGGCTCCACCAACAGCGGTCATTGTGGAAGCTCCACGTGGTGCTCCACCGACAGCAGTCATCGTCGATGCTCCAGATGGTGCTCCTCCAACGGCAGTCATGGTAGAGGCTCCAGATGGAGTTCCTCCCACAGCTGTCATGGTGGAAGCTCCGGATGGGGCTCCTCCGATTGCAGTCATAGTTGATGTTCCTGCAAGTAAAACATTTTA</canonical_amplicon>
		<polymorphic_amplicon>CGACAGCAGTCATTGTAGAGGCACCTCCTCCCATTGGGGCTCCACCAACAGCGGTCATTGTGGAAGCTCCACGTGGTGCTCCACCGACAGCAGTCATCGTCGATGCTCCAGATGGTGCTCCTCCAACGGCAGTCATGGTAGAGGCTCCAGATGGAGYTCCTCCCACAGCTGTCATGGTGGAAGCTCCGGATGGGGCTCCTCCGATTGCAGTCATAGTTGATGTTCCTGCAAGTAAAACATTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12117</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>194051</contig_pos>
        <strand>+</strand>
        <context>GCAGTCATTG[G/T]GGAAGCTCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGCGGTCATGGTGGAAGCTCCAGATGGGGCTCCACCAACAGCAGTCATTG</left_flank>
        <right_flank>GGAAGCTCCAGATGGAACACCTCCAACGGCAGTCATGGTCGAAGCTCCAG</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTCATGGTGCTTGGTCCTCCTGCTGGGGCTCCTCCAACAGCTGTCATAGTGGAAGCTCCTCTTGGGGCTCCTCCAACGGCAGTCATTGTTGAGGCTCCGGATGGGGCTCCTCCGACAGCAGTCATTGTAGAGGCACCTCCTCCCATTGGGGCTCCACCAACAGCGGTCATTGTGGAAGCTCCACGTGGTGCTCCACCGACAGCAGTCATCGTCGATGCTCCAGATGGTGCTCCTCCAACGGCAGTCATGGTAGAGGCTCCAGATGGAGTTCCTCCCACAGCTGTCATGGTGGAAGCTCCGGATGGGGCTCCTCCGATTGCAGTCATAGTTGATGTTCCTGCAAGTAAAACATTTTAACTACGGAACAAATTCAAAATACCCATTACCTCCCATTGGTGCTCCTCCGACAGCAGTCATGGTACTGGCTCCACGTGGTGCTCCTCCAATGGCGGTCATGGTGGAAGCTCCAGATGGGGCTCCACCAACAGCAGTCATTGGGGAAGCTCCAGATGGAACACCTCCAACGGCAGTCATGGTCGAAGCTCCAGATGGGGCTCCTCCGACGGCAGTCATTGTTGAGGCTCCGGTTGGGGCTCCACCCACAGCAGTCATGGTGGAAGCTCCAGTTGGGGCTCCTCCAACGGCGGTCATAGTACTAGCTCCTCTTGGTGCTCCTCCAACTGCGGTCATTGTCGATGCTCCAGATGGTGCTCCTCCGAGAGCTGTCATTGTTGATGCTCCGCCACCAGCAGCGGCTGAAACATTTAAAATTACTTTTCTTTTAACTTTTGATTCTTTCTGCTTACGTGGTGGTGCGAAAGCAGCTCCTCCTCCGACTGGTGCGGCTCCAGCTCCGGTTGGTGTAACAGAGAAATATGCGGATTGAGCACCGCCGCCACCGCCTCCTCCGGCTCCTCCAGCTCCCAAGTAGCACGATGTTCCTGGTGGTGGTGCACCGCCTCCTCCTCCCATTTTAGGAGCCCCACCTCCTCCAGCAG</canonical>
            <polymorphic>CAGTCATGGTGCTTGGTCCTCCTGCTGGGGCTCCTCCAACAGCTGTCATAGTGGAAGCTCCTCTTGGGGCTCCTCCAACGGCAGTCATTGTTGAGGCTCCGGATGGGGCTCCTCCGACAGCAGTCATTGTAGAGGCACCTCCTCCCATTGGGGCTCCACCAACAGCGGTCATTGTGGAAGCTCCACGTGGTGCTCCACCGACAGCAGTCATCGTCGATGCTCCAGATGGTGCTCCTCCAACGGCAGTCATGGTAGAGGCTCCAGATGGAGTTCCTCCCACAGCTGTCATGGTGGAAGCTCCGGATGGGGCTCCTCCGATTGCAGTCATAGTTGATGTTCCTGCAAGTAAAACATTTTAACTACGGAACAAATTCAAAATACCCATTACCTCCCATTGGTGCTCCTCCGACAGCAGTCATGGTACTGGCTCCACGTGGTGCTCCTCCAATGGCGGTCATGGTGGAAGCTCCAGATGGGGCTCCACCAACAGCAGTCATTGKGGAAGCTCCAGATGGAACACCTCCAACGGCAGTCATGGTCGAAGCTCCAGATGGGGCTCCTCCGACGGCAGTCATTGTTGAGGCTCCGGTTGGGGCTCCACCCACAGCAGTCATGGTGGAAGCTCCAGTTGGGGCTCCTCCAACGGCGGTCATAGTACTAGCTCCTCTTGGTGCTCCTCCAACTGCGGTCATTGTCGATGCTCCAGATGGTGCTCCTCCGAGAGCTGTCATTGTTGATGCTCCGCCACCAGCAGCGGCTGAAACATTTAAAATTACTTTTCTTTTAACTTTTGATTCTTTCTGCTTACGTGGTGGTGCGAAAGCAGCTCCTCCTCCGACTGGTGCGGCTCCAGCTCCGGTTGGTGTAACAGAGAAATATGCGGATTGAGCACCGCCGCCACCGCCTCCTCCGGCTCCTCCAGCTCCCAAGTAGCACGATGTTCCTGGTGGTGGTGCACCGCCTCCTCCTCCCATTTTAGGAGCCCCACCTCCTCCAGCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCAAAATACCCATTACCTC</pcr_primer_p1>
		<pcr_primer_p2>AGCACCAAGAGGAGCTAGTA</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>AAATTCAAAATACCCATTACCTCCCATTGGTGCTCCTCCGACAGCAGTCATGGTACTGGCTCCACGTGGTGCTCCTCCAATGGCGGTCATGGTGGAAGCTCCAGATGGGGCTCCACCAACAGCAGTCATTGGGGAAGCTCCAGATGGAACACCTCCAACGGCAGTCATGGTCGAAGCTCCAGATGGGGCTCCTCCGACGGCAGTCATTGTTGAGGCTCCGGTTGGGGCTCCACCCACAGCAGTCATGGTGGAAGCTCCAGTTGGGGCTCCTCCAACGGCGGTCATAGTACTAGCTCCTCTTGGTGCT</canonical_amplicon>
		<polymorphic_amplicon>AAATTCAAAATACCCATTACCTCCCATTGGTGCTCCTCCGACAGCAGTCATGGTACTGGCTCCACGTGGTGCTCCTCCAATGGCGGTCATGGTGGAAGCTCCAGATGGGGCTCCACCAACAGCAGTCATTGKGGAAGCTCCAGATGGAACACCTCCAACGGCAGTCATGGTCGAAGCTCCAGATGGGGCTCCTCCGACGGCAGTCATTGTTGAGGCTCCGGTTGGGGCTCCACCCACAGCAGTCATGGTGGAAGCTCCAGTTGGGGCTCCTCCAACGGCGGTCATAGTACTAGCTCCTCTTGGTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12120</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>287766</contig_pos>
        <strand>+</strand>
        <context>TACACATAAG[A/G]CATACTCTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTCAGAAAATTAAAACTTGAGTAAAGATAAGGTTACTTACACATAAG</left_flank>
        <right_flank>CATACTCTTCCTGGGAACGATGGACTTGGGGAAATGTCTTTGGAGTTGAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCACTTCTAACACAAACCCTTCCCTTCTGGCTGCCTGGAGACTGATCAACGTATCCTTGAATACAGACGCACTGATATTTCATTCCTCCAAGTGGTTCACAAACAGCAGCCGATGAGCAATCATGATCTGGTGGGCAGACTTCTGGTGCAGAACAGACACGTCCTGGTTGGCTGGCAAGATTTGGAGACCGATCCACGTATCCATCACGGCATTCACAAGTGTATCCTTCTTCAAGATCACGGCAATCGGCATGGTTACTGCAGGTATGACGTCCTTCACGACATTCATCCACCAGTTTGACACAAACTCTTCCTGGGCGGGCAAGCTTGTTTGGTGAACGATCGACGAATCCGTTGGGGCATTCGCAAGTGAATGATTGCTCATTGTCACGGCAAGTAGCAGATGGATCACAGTCGTGAACTCCCGTTTCGCATTCATTGATGACTGAAATTCAGAAAATTAAAACTTGAGTAAAGATAAGGTTACTTACACATAAGGCATACTCTTCCTGGGAACGATGGACTTGGGGAAATGTCTTTGGAGTTGACAGGGCAGTCGCATTCATATGAATCCATAATATCCTTACATCTGGCATTCTTATCACAATCGTTGAGACGTGGATTGGCACACTCATTGACAAGTTCTCGGCAAGCTCTTCCTTTGAGAGTTGGAGATGGAGAGACATCGATGAATCCATCTCTACATTCACAATCATATCCTTCTTCCTTATCAATACATCTGGCATTTCTATCACACGAGTTGAGAGATGGTCTCGAGCATTCGTTGATGAGCTGTTTGCAGATTCTTCCAGGTCTACCATGAGAATGATCCATGAATCCTTGATTACACTTGCACTCGTATCCTTCATCCAAATCAATGCATGAAGCATGTTGATGACAGTCGTTCAGATGTGGATACTGACATTCATTAACCATTGGTTTGCACATTCTACCCGGTCGTTTACGATCTCCGATGTCTTTGAATCCGTTCTTACATTG</canonical>
            <polymorphic>CTCACTTCTAACACAAACCCTTCCCTTCTGGCTGCCTGGAGACTGATCAACGTATCCTTGAATACAGACGCACTGATATTTCATTCCTCCAAGTGGTTCACAAACAGCAGCCGATGAGCAATCATGATCTGGTGGGCAGACTTCTGGTGCAGAACAGACACGTCCTGGTTGGCTGGCAAGATTTGGAGACCGATCCACGTATCCATCACGGCATTCACAAGTGTATCCTTCTTCAAGATCACGGCAATCGGCATGGTTACTGCAGGTATGACGTCCTTCACGACATTCATCCACCAGTTTGACACAAACTCTTCCTGGGCGGGCAAGCTTGTTTGGTGAACGATCGACGAATCCGTTGGGGCATTCGCAAGTGAATGATTGCTCATTGTCACGGCAAGTAGCAGATGGATCACAGTCGTGAACTCCCGTTTCGCATTCATTGATGACTGAAATTCAGAAAATTAAAACTTGAGTAAAGATAAGGTTACTTACACATAAGRCATACTCTTCCTGGGAACGATGGACTTGGGGAAATGTCTTTGGAGTTGACAGGGCAGTCGCATTCATATGAATCCATAATATCCTTACATCTGGCATTCTTATCACAATCGTTGAGACGTGGATTGGCACACTCATTGACAAGTTCTCGGCAAGCTCTTCCTTTGAGAGTTGGAGATGGAGAGACATCGATGAATCCATCTCTACATTCACAATCATATCCTTCTTCCTTATCAATACATCTGGCATTTCTATCACACGAGTTGAGAGATGGTCTCGAGCATTCGTTGATGAGCTGTTTGCAGATTCTTCCAGGTCTACCATGAGAATGATCCATGAATCCTTGATTACACTTGCACTCGTATCCTTCATCCAAATCAATGCATGAAGCATGTTGATGACAGTCGTTCAGATGTGGATACTGACATTCATTAACCATTGGTTTGCACATTCTACCCGGTCGTTTACGATCTCCGATGTCTTTGAATCCGTTCTTACATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTGAATGATTGCTCATTGT</pcr_primer_p1>
		<pcr_primer_p2>GTGATAAGAATGCCAGATGTAAG</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AAGTGAATGATTGCTCATTGTCACGGCAAGTAGCAGATGGATCACAGTCGTGAACTCCCGTTTCGCATTCATTGATGACTGAAATTCAGAAAATTAAAACTTGAGTAAAGATAAGGTTACTTACACATAAGGCATACTCTTCCTGGGAACGATGGACTTGGGGAAATGTCTTTGGAGTTGACAGGGCAGTCGCATTCATATGAATCCATAATATCCTTACATCTGGCATTCTTATCAC</canonical_amplicon>
		<polymorphic_amplicon>AAGTGAATGATTGCTCATTGTCACGGCAAGTAGCAGATGGATCACAGTCGTGAACTCCCGTTTCGCATTCATTGATGACTGAAATTCAGAAAATTAAAACTTGAGTAAAGATAAGGTTACTTACACATAAGRCATACTCTTCCTGGGAACGATGGACTTGGGGAAATGTCTTTGGAGTTGACAGGGCAGTCGCATTCATATGAATCCATAATATCCTTACATCTGGCATTCTTATCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12121</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>287750</contig_pos>
        <strand>+</strand>
        <context>TAAAGATAAG[A/G]TTACTTACAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTCATTGATGACTGAAATTCAGAAAATTAAAACTTGAGTAAAGATAAG</left_flank>
        <right_flank>TTACTTACACATAAGGCATACTCTTCCTGGGAACGATGGACTTGGGGAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTAAACACCTCAAACTCACTTCTAACACAAACCCTTCCCTTCTGGCTGCCTGGAGACTGATCAACGTATCCTTGAATACAGACGCACTGATATTTCATTCCTCCAAGTGGTTCACAAACAGCAGCCGATGAGCAATCATGATCTGGTGGGCAGACTTCTGGTGCAGAACAGACACGTCCTGGTTGGCTGGCAAGATTTGGAGACCGATCCACGTATCCATCACGGCATTCACAAGTGTATCCTTCTTCAAGATCACGGCAATCGGCATGGTTACTGCAGGTATGACGTCCTTCACGACATTCATCCACCAGTTTGACACAAACTCTTCCTGGGCGGGCAAGCTTGTTTGGTGAACGATCGACGAATCCGTTGGGGCATTCGCAAGTGAATGATTGCTCATTGTCACGGCAAGTAGCAGATGGATCACAGTCGTGAACTCCCGTTTCGCATTCATTGATGACTGAAATTCAGAAAATTAAAACTTGAGTAAAGATAAGGTTACTTACACATAAGGCATACTCTTCCTGGGAACGATGGACTTGGGGAAATGTCTTTGGAGTTGACAGGGCAGTCGCATTCATATGAATCCATAATATCCTTACATCTGGCATTCTTATCACAATCGTTGAGACGTGGATTGGCACACTCATTGACAAGTTCTCGGCAAGCTCTTCCTTTGAGAGTTGGAGATGGAGAGACATCGATGAATCCATCTCTACATTCACAATCATATCCTTCTTCCTTATCAATACATCTGGCATTTCTATCACACGAGTTGAGAGATGGTCTCGAGCATTCGTTGATGAGCTGTTTGCAGATTCTTCCAGGTCTACCATGAGAATGATCCATGAATCCTTGATTACACTTGCACTCGTATCCTTCATCCAAATCAATGCATGAAGCATGTTGATGACAGTCGTTCAGATGTGGATACTGACATTCATTAACCATTGGTTTGCACATTCTACCCGGTCGTTTACGATCTCCGATGTCTTTGA</canonical>
            <polymorphic>TTTTAAACACCTCAAACTCACTTCTAACACAAACCCTTCCCTTCTGGCTGCCTGGAGACTGATCAACGTATCCTTGAATACAGACGCACTGATATTTCATTCCTCCAAGTGGTTCACAAACAGCAGCCGATGAGCAATCATGATCTGGTGGGCAGACTTCTGGTGCAGAACAGACACGTCCTGGTTGGCTGGCAAGATTTGGAGACCGATCCACGTATCCATCACGGCATTCACAAGTGTATCCTTCTTCAAGATCACGGCAATCGGCATGGTTACTGCAGGTATGACGTCCTTCACGACATTCATCCACCAGTTTGACACAAACTCTTCCTGGGCGGGCAAGCTTGTTTGGTGAACGATCGACGAATCCGTTGGGGCATTCGCAAGTGAATGATTGCTCATTGTCACGGCAAGTAGCAGATGGATCACAGTCGTGAACTCCCGTTTCGCATTCATTGATGACTGAAATTCAGAAAATTAAAACTTGAGTAAAGATAAGRTTACTTACACATAAGGCATACTCTTCCTGGGAACGATGGACTTGGGGAAATGTCTTTGGAGTTGACAGGGCAGTCGCATTCATATGAATCCATAATATCCTTACATCTGGCATTCTTATCACAATCGTTGAGACGTGGATTGGCACACTCATTGACAAGTTCTCGGCAAGCTCTTCCTTTGAGAGTTGGAGATGGAGAGACATCGATGAATCCATCTCTACATTCACAATCATATCCTTCTTCCTTATCAATACATCTGGCATTTCTATCACACGAGTTGAGAGATGGTCTCGAGCATTCGTTGATGAGCTGTTTGCAGATTCTTCCAGGTCTACCATGAGAATGATCCATGAATCCTTGATTACACTTGCACTCGTATCCTTCATCCAAATCAATGCATGAAGCATGTTGATGACAGTCGTTCAGATGTGGATACTGACATTCATTAACCATTGGTTTGCACATTCTACCCGGTCGTTTACGATCTCCGATGTCTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 271 132 96</canonical_bands>
                <polymorphic_bands>597 271 132</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTGAATGATTGCTCATTGT</pcr_primer_p1>
		<pcr_primer_p2>GTGATAAGAATGCCAGATGTAAG</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AAGTGAATGATTGCTCATTGTCACGGCAAGTAGCAGATGGATCACAGTCGTGAACTCCCGTTTCGCATTCATTGATGACTGAAATTCAGAAAATTAAAACTTGAGTAAAGATAAGGTTACTTACACATAAGGCATACTCTTCCTGGGAACGATGGACTTGGGGAAATGTCTTTGGAGTTGACAGGGCAGTCGCATTCATATGAATCCATAATATCCTTACATCTGGCATTCTTATCAC</canonical_amplicon>
		<polymorphic_amplicon>AAGTGAATGATTGCTCATTGTCACGGCAAGTAGCAGATGGATCACAGTCGTGAACTCCCGTTTCGCATTCATTGATGACTGAAATTCAGAAAATTAAAACTTGAGTAAAGATAAGRTTACTTACACATAAGGCATACTCTTCCTGGGAACGATGGACTTGGGGAAATGTCTTTGGAGTTGACAGGGCAGTCGCATTCATATGAATCCATAATATCCTTACATCTGGCATTCTTATCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12122</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>287593</contig_pos>
        <strand>+</strand>
        <context>GGGCGGGCAA[A/G]CTTGTTTGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCACGACATTCATCCACCAGTTTGACACAAACTCTTCCTGGGCGGGCAA</left_flank>
        <right_flank>CTTGTTTGGTGAACGATCGACGAATCCGTTGGGGCATTCGCAAGTGAATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGTTGAGAAGAATCTGGTGATCGATCTATGAACCCACGTTTGCATTCACAACGATATCCTCTTGGCTCATCATAGCAAATTGCGTTTCGAGAGCATGTGTTGAGACGAGGATCGTGACAAGCGTTATCTGAAAATGTTGAAAACGTTCAATTGAAATTTTAAACACCTCAAACTCACTTCTAACACAAACCCTTCCCTTCTGGCTGCCTGGAGACTGATCAACGTATCCTTGAATACAGACGCACTGATATTTCATTCCTCCAAGTGGTTCACAAACAGCAGCCGATGAGCAATCATGATCTGGTGGGCAGACTTCTGGTGCAGAACAGACACGTCCTGGTTGGCTGGCAAGATTTGGAGACCGATCCACGTATCCATCACGGCATTCACAAGTGTATCCTTCTTCAAGATCACGGCAATCGGCATGGTTACTGCAGGTATGACGTCCTTCACGACATTCATCCACCAGTTTGACACAAACTCTTCCTGGGCGGGCAAGCTTGTTTGGTGAACGATCGACGAATCCGTTGGGGCATTCGCAAGTGAATGATTGCTCATTGTCACGGCAAGTAGCAGATGGATCACAGTCGTGAACTCCCGTTTCGCATTCATTGATGACTGAAATTCAGAAAATTAAAACTTGAGTAAAGATAAGGTTACTTACACATAAGGCATACTCTTCCTGGGAACGATGGACTTGGGGAAATGTCTTTGGAGTTGACAGGGCAGTCGCATTCATATGAATCCATAATATCCTTACATCTGGCATTCTTATCACAATCGTTGAGACGTGGATTGGCACACTCATTGACAAGTTCTCGGCAAGCTCTTCCTTTGAGAGTTGGAGATGGAGAGACATCGATGAATCCATCTCTACATTCACAATCATATCCTTCTTCCTTATCAATACATCTGGCATTTCTATCACACGAGTTGAGAGATGGTCTCGAGCATTCGTTGATGAGCTGTTTGCAGATTCTTCCAGGTCTACCATGAGAA</canonical>
            <polymorphic>ACGTTGAGAAGAATCTGGTGATCGATCTATGAACCCACGTTTGCATTCACAACGATATCCTCTTGGCTCATCATAGCAAATTGCGTTTCGAGAGCATGTGTTGAGACGAGGATCGTGACAAGCGTTATCTGAAAATGTTGAAAACGTTCAATTGAAATTTTAAACACCTCAAACTCACTTCTAACACAAACCCTTCCCTTCTGGCTGCCTGGAGACTGATCAACGTATCCTTGAATACAGACGCACTGATATTTCATTCCTCCAAGTGGTTCACAAACAGCAGCCGATGAGCAATCATGATCTGGTGGGCAGACTTCTGGTGCAGAACAGACACGTCCTGGTTGGCTGGCAAGATTTGGAGACCGATCCACGTATCCATCACGGCATTCACAAGTGTATCCTTCTTCAAGATCACGGCAATCGGCATGGTTACTGCAGGTATGACGTCCTTCACGACATTCATCCACCAGTTTGACACAAACTCTTCCTGGGCGGGCAARCTTGTTTGGTGAACGATCGACGAATCCGTTGGGGCATTCGCAAGTGAATGATTGCTCATTGTCACGGCAAGTAGCAGATGGATCACAGTCGTGAACTCCCGTTTCGCATTCATTGATGACTGAAATTCAGAAAATTAAAACTTGAGTAAAGATAAGGTTACTTACACATAAGGCATACTCTTCCTGGGAACGATGGACTTGGGGAAATGTCTTTGGAGTTGACAGGGCAGTCGCATTCATATGAATCCATAATATCCTTACATCTGGCATTCTTATCACAATCGTTGAGACGTGGATTGGCACACTCATTGACAAGTTCTCGGCAAGCTCTTCCTTTGAGAGTTGGAGATGGAGAGACATCGATGAATCCATCTCTACATTCACAATCATATCCTTCTTCCTTATCAATACATCTGGCATTTCTATCACACGAGTTGAGAGATGGTCTCGAGCATTCGTTGATGAGCTGTTTGCAGATTCTTCCAGGTCTACCATGAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>500 327 139 34</canonical_bands>
                <polymorphic_bands>827 139 34</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>347 327 175 147 4</canonical_bands>
                <polymorphic_bands>347 331 175 147</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>327 155 139 138 79 66 62 34</canonical_bands>
                <polymorphic_bands>482 139 138 79 66 62 34</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTCTGGTGCAGAACAGAC</pcr_primer_p1>
		<pcr_primer_p2>ACAATGAGCAATCATTCACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTCTGGTGCAGAACAGACACGTCCTGGTTGGCTGGCAAGATTTGGAGACCGATCCACGTATCCATCACGGCATTCACAAGTGTATCCTTCTTCAAGATCACGGCAATCGGCATGGTTACTGCAGGTATGACGTCCTTCACGACATTCATCCACCAGTTTGACACAAACTCTTCCTGGGCGGGCAAGCTTGTTTGGTGAACGATCGACGAATCCGTTGGGGCATTCGCAAGTGAATGATTGCTCATTGT</canonical_amplicon>
		<polymorphic_amplicon>ACTTCTGGTGCAGAACAGACACGTCCTGGTTGGCTGGCAAGATTTGGAGACCGATCCACGTATCCATCACGGCATTCACAAGTGTATCCTTCTTCAAGATCACGGCAATCGGCATGGTTACTGCAGGTATGACGTCCTTCACGACATTCATCCACCAGTTTGACACAAACTCTTCCTGGGCGGGCAARCTTGTTTGGTGAACGATCGACGAATCCGTTGGGGCATTCGCAAGTGAATGATTGCTCATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12123</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>287557</contig_pos>
        <strand>+</strand>
        <context>CGACATTCAT[C/T]CACCAGTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGGCAATCGGCATGGTTACTGCAGGTATGACGTCCTTCACGACATTCAT</left_flank>
        <right_flank>CACCAGTTTGACACAAACTCTTCCTGGGCGGGCAAGCTTGTTTGGTGAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAGATGGAGGGGGTGGTGGTTCACAAACTCTTCCACGTTGAGAAGAATCTGGTGATCGATCTATGAACCCACGTTTGCATTCACAACGATATCCTCTTGGCTCATCATAGCAAATTGCGTTTCGAGAGCATGTGTTGAGACGAGGATCGTGACAAGCGTTATCTGAAAATGTTGAAAACGTTCAATTGAAATTTTAAACACCTCAAACTCACTTCTAACACAAACCCTTCCCTTCTGGCTGCCTGGAGACTGATCAACGTATCCTTGAATACAGACGCACTGATATTTCATTCCTCCAAGTGGTTCACAAACAGCAGCCGATGAGCAATCATGATCTGGTGGGCAGACTTCTGGTGCAGAACAGACACGTCCTGGTTGGCTGGCAAGATTTGGAGACCGATCCACGTATCCATCACGGCATTCACAAGTGTATCCTTCTTCAAGATCACGGCAATCGGCATGGTTACTGCAGGTATGACGTCCTTCACGACATTCATCCACCAGTTTGACACAAACTCTTCCTGGGCGGGCAAGCTTGTTTGGTGAACGATCGACGAATCCGTTGGGGCATTCGCAAGTGAATGATTGCTCATTGTCACGGCAAGTAGCAGATGGATCACAGTCGTGAACTCCCGTTTCGCATTCATTGATGACTGAAATTCAGAAAATTAAAACTTGAGTAAAGATAAGGTTACTTACACATAAGGCATACTCTTCCTGGGAACGATGGACTTGGGGAAATGTCTTTGGAGTTGACAGGGCAGTCGCATTCATATGAATCCATAATATCCTTACATCTGGCATTCTTATCACAATCGTTGAGACGTGGATTGGCACACTCATTGACAAGTTCTCGGCAAGCTCTTCCTTTGAGAGTTGGAGATGGAGAGACATCGATGAATCCATCTCTACATTCACAATCATATCCTTCTTCCTTATCAATACATCTGGCATTTCTATCACACGAGTTGAGAGATGGTCTCGAGCATTCGTTGATG</canonical>
            <polymorphic>TGGAGATGGAGGGGGTGGTGGTTCACAAACTCTTCCACGTTGAGAAGAATCTGGTGATCGATCTATGAACCCACGTTTGCATTCACAACGATATCCTCTTGGCTCATCATAGCAAATTGCGTTTCGAGAGCATGTGTTGAGACGAGGATCGTGACAAGCGTTATCTGAAAATGTTGAAAACGTTCAATTGAAATTTTAAACACCTCAAACTCACTTCTAACACAAACCCTTCCCTTCTGGCTGCCTGGAGACTGATCAACGTATCCTTGAATACAGACGCACTGATATTTCATTCCTCCAAGTGGTTCACAAACAGCAGCCGATGAGCAATCATGATCTGGTGGGCAGACTTCTGGTGCAGAACAGACACGTCCTGGTTGGCTGGCAAGATTTGGAGACCGATCCACGTATCCATCACGGCATTCACAAGTGTATCCTTCTTCAAGATCACGGCAATCGGCATGGTTACTGCAGGTATGACGTCCTTCACGACATTCATYCACCAGTTTGACACAAACTCTTCCTGGGCGGGCAAGCTTGTTTGGTGAACGATCGACGAATCCGTTGGGGCATTCGCAAGTGAATGATTGCTCATTGTCACGGCAAGTAGCAGATGGATCACAGTCGTGAACTCCCGTTTCGCATTCATTGATGACTGAAATTCAGAAAATTAAAACTTGAGTAAAGATAAGGTTACTTACACATAAGGCATACTCTTCCTGGGAACGATGGACTTGGGGAAATGTCTTTGGAGTTGACAGGGCAGTCGCATTCATATGAATCCATAATATCCTTACATCTGGCATTCTTATCACAATCGTTGAGACGTGGATTGGCACACTCATTGACAAGTTCTCGGCAAGCTCTTCCTTTGAGAGTTGGAGATGGAGAGACATCGATGAATCCATCTCTACATTCACAATCATATCCTTCTTCCTTATCAATACATCTGGCATTTCTATCACACGAGTTGAGAGATGGTCTCGAGCATTCGTTGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTCTGGTGCAGAACAGAC</pcr_primer_p1>
		<pcr_primer_p2>ACAATGAGCAATCATTCACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTCTGGTGCAGAACAGACACGTCCTGGTTGGCTGGCAAGATTTGGAGACCGATCCACGTATCCATCACGGCATTCACAAGTGTATCCTTCTTCAAGATCACGGCAATCGGCATGGTTACTGCAGGTATGACGTCCTTCACGACATTCATCCACCAGTTTGACACAAACTCTTCCTGGGCGGGCAAGCTTGTTTGGTGAACGATCGACGAATCCGTTGGGGCATTCGCAAGTGAATGATTGCTCATTGT</canonical_amplicon>
		<polymorphic_amplicon>ACTTCTGGTGCAGAACAGACACGTCCTGGTTGGCTGGCAAGATTTGGAGACCGATCCACGTATCCATCACGGCATTCACAAGTGTATCCTTCTTCAAGATCACGGCAATCGGCATGGTTACTGCAGGTATGACGTCCTTCACGACATTCATYCACCAGTTTGACACAAACTCTTCCTGGGCGGGCAAGCTTGTTTGGTGAACGATCGACGAATCCGTTGGGGCATTCGCAAGTGAATGATTGCTCATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12124</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>287372</contig_pos>
        <strand>+</strand>
        <context>GTTCACAAAC[A/G]GCAGCCGATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTTGAATACAGACGCACTGATATTTCATTCCTCCAAGTGGTTCACAAAC</left_flank>
        <right_flank>GCAGCCGATGAGCAATCATGATCTGGTGGGCAGACTTCTGGTGCAGAACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGGATCCAAACAAATCGGCTCGGTGAGAACACAGAGTCTTCCTGGTTTGGCGAGTGGGCTTGGAGAACGATCAGCATATCCAGCAAGACATTCACAAGTGTAGCTTTGAGCGCCAGTATCACGGCATGTTCCAGCTGGATGACAGTCGTTTCTTTCTGGGTCTTGACATGGATGACGTGGTGGTGGAGATGGAGGGGGTGGTGGTTCACAAACTCTTCCACGTTGAGAAGAATCTGGTGATCGATCTATGAACCCACGTTTGCATTCACAACGATATCCTCTTGGCTCATCATAGCAAATTGCGTTTCGAGAGCATGTGTTGAGACGAGGATCGTGACAAGCGTTATCTGAAAATGTTGAAAACGTTCAATTGAAATTTTAAACACCTCAAACTCACTTCTAACACAAACCCTTCCCTTCTGGCTGCCTGGAGACTGATCAACGTATCCTTGAATACAGACGCACTGATATTTCATTCCTCCAAGTGGTTCACAAACAGCAGCCGATGAGCAATCATGATCTGGTGGGCAGACTTCTGGTGCAGAACAGACACGTCCTGGTTGGCTGGCAAGATTTGGAGACCGATCCACGTATCCATCACGGCATTCACAAGTGTATCCTTCTTCAAGATCACGGCAATCGGCATGGTTACTGCAGGTATGACGTCCTTCACGACATTCATCCACCAGTTTGACACAAACTCTTCCTGGGCGGGCAAGCTTGTTTGGTGAACGATCGACGAATCCGTTGGGGCATTCGCAAGTGAATGATTGCTCATTGTCACGGCAAGTAGCAGATGGATCACAGTCGTGAACTCCCGTTTCGCATTCATTGATGACTGAAATTCAGAAAATTAAAACTTGAGTAAAGATAAGGTTACTTACACATAAGGCATACTCTTCCTGGGAACGATGGACTTGGGGAAATGTCTTTGGAGTTGACAGGGCAGTCGCATTCATATGAATCCATAATATCCTTACATCTGGCATTCTTATCAC</canonical>
            <polymorphic>TCTGGATCCAAACAAATCGGCTCGGTGAGAACACAGAGTCTTCCTGGTTTGGCGAGTGGGCTTGGAGAACGATCAGCATATCCAGCAAGACATTCACAAGTGTAGCTTTGAGCGCCAGTATCACGGCATGTTCCAGCTGGATGACAGTCGTTTCTTTCTGGGTCTTGACATGGATGACGTGGTGGTGGAGATGGAGGGGGTGGTGGTTCACAAACTCTTCCACGTTGAGAAGAATCTGGTGATCGATCTATGAACCCACGTTTGCATTCACAACGATATCCTCTTGGCTCATCATAGCAAATTGCGTTTCGAGAGCATGTGTTGAGACGAGGATCGTGACAAGCGTTATCTGAAAATGTTGAAAACGTTCAATTGAAATTTTAAACACCTCAAACTCACTTCTAACACAAACCCTTCCCTTCTGGCTGCCTGGAGACTGATCAACGTATCCTTGAATACAGACGCACTGATATTTCATTCCTCCAAGTGGTTCACAAACRGCAGCCGATGAGCAATCATGATCTGGTGGGCAGACTTCTGGTGCAGAACAGACACGTCCTGGTTGGCTGGCAAGATTTGGAGACCGATCCACGTATCCATCACGGCATTCACAAGTGTATCCTTCTTCAAGATCACGGCAATCGGCATGGTTACTGCAGGTATGACGTCCTTCACGACATTCATCCACCAGTTTGACACAAACTCTTCCTGGGCGGGCAAGCTTGTTTGGTGAACGATCGACGAATCCGTTGGGGCATTCGCAAGTGAATGATTGCTCATTGTCACGGCAAGTAGCAGATGGATCACAGTCGTGAACTCCCGTTTCGCATTCATTGATGACTGAAATTCAGAAAATTAAAACTTGAGTAAAGATAAGGTTACTTACACATAAGGCATACTCTTCCTGGGAACGATGGACTTGGGGAAATGTCTTTGGAGTTGACAGGGCAGTCGCATTCATATGAATCCATAATATCCTTACATCTGGCATTCTTATCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACCTCAAACTCACTTCTAACA</pcr_primer_p1>
		<pcr_primer_p2>GATCTTGAAGAAGGATACACTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACACCTCAAACTCACTTCTAACACAAACCCTTCCCTTCTGGCTGCCTGGAGACTGATCAACGTATCCTTGAATACAGACGCACTGATATTTCATTCCTCCAAGTGGTTCACAAACAGCAGCCGATGAGCAATCATGATCTGGTGGGCAGACTTCTGGTGCAGAACAGACACGTCCTGGTTGGCTGGCAAGATTTGGAGACCGATCCACGTATCCATCACGGCATTCACAAGTGTATCCTTCTTCAAGATC</canonical_amplicon>
		<polymorphic_amplicon>ACACCTCAAACTCACTTCTAACACAAACCCTTCCCTTCTGGCTGCCTGGAGACTGATCAACGTATCCTTGAATACAGACGCACTGATATTTCATTCCTCCAAGTGGTTCACAAACRGCAGCCGATGAGCAATCATGATCTGGTGGGCAGACTTCTGGTGCAGAACAGACACGTCCTGGTTGGCTGGCAAGATTTGGAGACCGATCCACGTATCCATCACGGCATTCACAAGTGTATCCTTCTTCAAGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12125</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>309881</contig_pos>
        <strand>+</strand>
        <context>AGAAGGAAAT[C/T]TTCGGGAGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAATGCAAGAGCAAAATTCACCAGGTCAAAAAAGGGGAGAAGGAAAT</left_flank>
        <right_flank>TTCGGGAGGACAAGAAAACGATAAGCGAAAGAATTGAATACACCGAGAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAACAAGAAAAGCACCCATCTCCGTCCGTCGTCTCGTTGTAATTGTAATCCAAACCCTTTTTGACGGTATACCCGTATGTAACCATATATCCCCCTCCCTTTTTGCACAGTGCTATTGTTTTGCCGAGTGTGCATATAATACCACACATGTGTTCCACTTTTCTTGTTGGAGGTGCGTTTTTTCTAGGTTCCTTTCTGCATAAATAAATAATTAGAATAAAAAAAGAGGGAGGAGGAAGAACATAAATTAGCATTACCTTCTTTTCATTGGAAAAACCATAAAACTTAAGTGATTCAAACGTATTCTTCTTCTTCCGTTCTCGGACATACACACAATTTCATTATACTTCTTCTTCCTCAGAAACTTCTGAATGTCTCGGGATGATGGGAAGGTCACATATATAGCAAATGCATTTATTAAAGGTAGATCCGCAAAATGTAATAATACAAAAAATGCAAGAGCAAAATTCACCAGGTCAAAAAAGGGGAGAAGGAAATCTTCGGGAGGACAAGAAAACGATAAGCGAAAGAATTGAATACACCGAGAAATCTAGATTCTACACAACGGAAGCATTTTTAGATCTGTATTTTTTTCTGTCGAAGAATTTTTGATGATGGATGAGCTGGGAGGTTGCAAACAAGTGTGTGAAAAAATGAAATTGTGTGGTTGAAGAGGTCCCGTACGGAAAATGACTAAGTCATGTATTGGTAAACGGAATAATAATGGATTTCTGGATAATGTAGATAGCATTACCTAGAAATGGAGAAACAGAATATACCCAGAGAGGATTCCTAAGGAATGTGTGAAAACAAGATAAGAGATAAGCAAGCAAAACAGGAGAATATTTGAGAAAAAAAAACAAAAGAAGAGATAAAACGATGGGAGAATGTGTCTAATTTATGGTGTCACTGTACTGTTGACGATTACCGCCCATGTTGGAAACTCGAGAAGTGGAAGAGTTAAGTATGCAATACTGTTCATGTACATGACTGTCAGAA</canonical>
            <polymorphic>TGAACAAGAAAAGCACCCATCTCCGTCCGTCGTCTCGTTGTAATTGTAATCCAAACCCTTTTTGACGGTATACCCGTATGTAACCATATATCCCCCTCCCTTTTTGCACAGTGCTATTGTTTTGCCGAGTGTGCATATAATACCACACATGTGTTCCACTTTTCTTGTTGGAGGTGCGTTTTTTCTAGGTTCCTTTCTGCATAAATAAATAATTAGAATAAAAAAAGAGGGAGGAGGAAGAACATAAATTAGCATTACCTTCTTTTCATTGGAAAAACCATAAAACTTAAGTGATTCAAACGTATTCTTCTTCTTCCGTTCTCGGACATACACACAATTTCATTATACTTCTTCTTCCTCAGAAACTTCTGAATGTCTCGGGATGATGGGAAGGTCACATATATAGCAAATGCATTTATTAAAGGTAGATCCGCAAAATGTAATAATACAAAAAATGCAAGAGCAAAATTCACCAGGTCAAAAAAGGGGAGAAGGAAATYTTCGGGAGGACAAGAAAACGATAAGCGAAAGAATTGAATACACCGAGAAATCTAGATTCTACACAACGGAAGCATTTTTAGATCTGTATTTTTTTCTGTCGAAGAATTTTTGATGATGGATGAGCTGGGAGGTTGCAAACAAGTGTGTGAAAAAATGAAATTGTGTGGTTGAAGAGGTCCCGTACGGAAAATGACTAAGTCATGTATTGGTAAACGGAATAATAATGGATTTCTGGATAATGTAGATAGCATTACCTAGAAATGGAGAAACAGAATATACCCAGAGAGGATTCCTAAGGAATGTGTGAAAACAAGATAAGAGATAAGCAAGCAAAACAGGAGAATATTTGAGAAAAAAAAACAAAAGAAGAGATAAAACGATGGGAGAATGTGTCTAATTTATGGTGTCACTGTACTGTTGACGATTACCGCCCATGTTGGAAACTCGAGAAGTGGAAGAGTTAAGTATGCAATACTGTTCATGTACATGACTGTCAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGCAAAATGTAATAATACAAAA</pcr_primer_p1>
		<pcr_primer_p2>TCTTCAACCACACAATTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CCGCAAAATGTAATAATACAAAAAATGCAAGAGCAAAATTCACCAGGTCAAAAAAGGGGAGAAGGAAATCTTCGGGAGGACAAGAAAACGATAAGCGAAAGAATTGAATACACCGAGAAATCTAGATTCTACACAACGGAAGCATTTTTAGATCTGTATTTTTTTCTGTCGAAGAATTTTTGATGATGGATGAGCTGGGAGGTTGCAAACAAGTGTGTGAAAAAATGAAATTGTGTGGTTGAAGA</canonical_amplicon>
		<polymorphic_amplicon>CCGCAAAATGTAATAATACAAAAAATGCAAGAGCAAAATTCACCAGGTCAAAAAAGGGGAGAAGGAAATYTTCGGGAGGACAAGAAAACGATAAGCGAAAGAATTGAATACACCGAGAAATCTAGATTCTACACAACGGAAGCATTTTTAGATCTGTATTTTTTTCTGTCGAAGAATTTTTGATGATGGATGAGCTGGGAGGTTGCAAACAAGTGTGTGAAAAAATGAAATTGTGTGGTTGAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12126</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>310140</contig_pos>
        <strand>+</strand>
        <context>GCATTACCTA[A/G]AAATGGAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTAAACGGAATAATAATGGATTTCTGGATAATGTAGATAGCATTACCTA</left_flank>
        <right_flank>AAATGGAGAAACAGAATATACCCAGAGAGGATTCCTAAGGAATGTGTGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTTTCATTGGAAAAACCATAAAACTTAAGTGATTCAAACGTATTCTTCTTCTTCCGTTCTCGGACATACACACAATTTCATTATACTTCTTCTTCCTCAGAAACTTCTGAATGTCTCGGGATGATGGGAAGGTCACATATATAGCAAATGCATTTATTAAAGGTAGATCCGCAAAATGTAATAATACAAAAAATGCAAGAGCAAAATTCACCAGGTCAAAAAAGGGGAGAAGGAAATCTTCGGGAGGACAAGAAAACGATAAGCGAAAGAATTGAATACACCGAGAAATCTAGATTCTACACAACGGAAGCATTTTTAGATCTGTATTTTTTTCTGTCGAAGAATTTTTGATGATGGATGAGCTGGGAGGTTGCAAACAAGTGTGTGAAAAAATGAAATTGTGTGGTTGAAGAGGTCCCGTACGGAAAATGACTAAGTCATGTATTGGTAAACGGAATAATAATGGATTTCTGGATAATGTAGATAGCATTACCTAGAAATGGAGAAACAGAATATACCCAGAGAGGATTCCTAAGGAATGTGTGAAAACAAGATAAGAGATAAGCAAGCAAAACAGGAGAATATTTGAGAAAAAAAAACAAAAGAAGAGATAAAACGATGGGAGAATGTGTCTAATTTATGGTGTCACTGTACTGTTGACGATTACCGCCCATGTTGGAAACTCGAGAAGTGGAAGAGTTAAGTATGCAATACTGTTCATGTACATGACTGTCAGAATCAGAAGTTCAATTGAGATGATGCCACCAACGAACGCCTGAATTTTAGAATTTAGGATTTTCAATGAGATCCGACTTCAACATTTGACCTACCATATCTGATACTTTGACCATTCCACTTCCGAAGACAATCGCATTTGGGGGAGTTCCAACAGGGAAGATGAAGGCAAATGAAGAAGCCAACGTTGTCGGAAGCATTAAAGTGAATGGATGATGTCCTGCTCTCTGAGCAAGTGTAGCTACGATTGGAACAAAAATGG</canonical>
            <polymorphic>TTCTTTTCATTGGAAAAACCATAAAACTTAAGTGATTCAAACGTATTCTTCTTCTTCCGTTCTCGGACATACACACAATTTCATTATACTTCTTCTTCCTCAGAAACTTCTGAATGTCTCGGGATGATGGGAAGGTCACATATATAGCAAATGCATTTATTAAAGGTAGATCCGCAAAATGTAATAATACAAAAAATGCAAGAGCAAAATTCACCAGGTCAAAAAAGGGGAGAAGGAAATCTTCGGGAGGACAAGAAAACGATAAGCGAAAGAATTGAATACACCGAGAAATCTAGATTCTACACAACGGAAGCATTTTTAGATCTGTATTTTTTTCTGTCGAAGAATTTTTGATGATGGATGAGCTGGGAGGTTGCAAACAAGTGTGTGAAAAAATGAAATTGTGTGGTTGAAGAGGTCCCGTACGGAAAATGACTAAGTCATGTATTGGTAAACGGAATAATAATGGATTTCTGGATAATGTAGATAGCATTACCTARAAATGGAGAAACAGAATATACCCAGAGAGGATTCCTAAGGAATGTGTGAAAACAAGATAAGAGATAAGCAAGCAAAACAGGAGAATATTTGAGAAAAAAAAACAAAAGAAGAGATAAAACGATGGGAGAATGTGTCTAATTTATGGTGTCACTGTACTGTTGACGATTACCGCCCATGTTGGAAACTCGAGAAGTGGAAGAGTTAAGTATGCAATACTGTTCATGTACATGACTGTCAGAATCAGAAGTTCAATTGAGATGATGCCACCAACGAACGCCTGAATTTTAGAATTTAGGATTTTCAATGAGATCCGACTTCAACATTTGACCTACCATATCTGATACTTTGACCATTCCACTTCCGAAGACAATCGCATTTGGGGGAGTTCCAACAGGGAAGATGAAGGCAAATGAAGAAGCCAACGTTGTCGGAAGCATTAAAGTGAATGGATGATGTCCTGCTCTCTGAGCAAGTGTAGCTACGATTGGAACAAAAATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 293 204</canonical_bands>
                <polymorphic_bands>707 293</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGTACGGAAAATGACTAAG</pcr_primer_p1>
		<pcr_primer_p2>CAACAGTACAGTGACACCATAAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CCGTACGGAAAATGACTAAGTCATGTATTGGTAAACGGAATAATAATGGATTTCTGGATAATGTAGATAGCATTACCTAGAAATGGAGAAACAGAATATACCCAGAGAGGATTCCTAAGGAATGTGTGAAAACAAGATAAGAGATAAGCAAGCAAAACAGGAGAATATTTGAGAAAAAAAAACAAAAGAAGAGATAAAACGATGGGAGAATGTGTCTAATTTATGGTGTCACTGTACTGTTG</canonical_amplicon>
		<polymorphic_amplicon>CCGTACGGAAAATGACTAAGTCATGTATTGGTAAACGGAATAATAATGGATTTCTGGATAATGTAGATAGCATTACCTARAAATGGAGAAACAGAATATACCCAGAGAGGATTCCTAAGGAATGTGTGAAAACAAGATAAGAGATAAGCAAGCAAAACAGGAGAATATTTGAGAAAAAAAAACAAAAGAAGAGATAAAACGATGGGAGAATGTGTCTAATTTATGGTGTCACTGTACTGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12135</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>313814</contig_pos>
        <strand></strand>
        <context>ctctctctct[C/T]tatttctcCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAGGAATTGAGAAGGCGTCCTCTCTCTCTCTCCCGAATTCTCTCTCTCT</left_flank>
        <right_flank>TATTTCTCCATGCTTTACTTACTCTTTATTTTTCCTAATAGTTTTTTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTTCTTTAAATTTTGGTAACATTTTCCATTGTCTCAGTTGTTTTGAAAATTTAAATTCAAACTTCTAGGTTCTTGAAATTCTGTAATAAGCTCATTTTATTTTCCAGCTGGTGACCCATTCTTTTCTTTACTTAACTATACGAATTTCAAAATTCTCAACCCATCTGGCAAATCGTTCCATCGTCTTATTTGCAGAGAGAACCCAACAACTCTTCCCCCTCCCAACAAATTTGCTCTCTCTCTCTTCCAGAATCATCCATCCCGTTCCACTCTTTAGACACCTTCTGTTTTGATATATGCACAACGACAGGAGAAGGGGACACTGGGACACCAAAAAAACCAAGCACAGAAAACGAATGAGCGGGCGAGGGATCGAAAGCTTTTCGTGTGTCTGTGTGACGTAGCGAGAACAGAAGAGAGCAAGTGTGGAGGAAGGAAATTGTCATGCGAGGAATTGAGAAGGCGTCCTCTCTCTCTCTCCCGAATTCTCTCTCTCTCTATTTCTCCATGCTTTACTTACTCTTTATTTTTCCTAATAGTTTTTTTTTACTTTTTTAAAGGGCTCCATTCTTCTTCTTCTTGGAACCGACCCTTTCCCTCTAAACTCACCGGTCCTTCCCACCACAGCATTTGTCCAAATAATAATGGCGTCAGAACGAGAACCAATCCATTCTTCATTCGACGCAACAGACATAGCAGTCGCTCCTTGTTGGACACCTAAAAAAAACAGAAGATAAAGTACCGAACAAAGAAGTTGAGTAATTCGGGTACCTCTCTGGAGACAAAATGCTGAACGAAATTGGTGCTCGAAGAGCTTTCAAGCATCCGTTGACGGCTCTCCGAGTTCTCCGGCCATCCGGACAAATGGAGGGAGAGAGACATTGTACCGTAGTGCTGGTCCAGTATTACAGATAGGATATGGATAACTGGAGTAACTGAAAAAAACGATAGTGGGGGAAAAAAGAAAAGAGAGGCGAAAAGAGATGGGAGAAACGAGC</canonical>
            <polymorphic>AACTTCTTTAAATTTTGGTAACATTTTCCATTGTCTCAGTTGTTTTGAAAATTTAAATTCAAACTTCTAGGTTCTTGAAATTCTGTAATAAGCTCATTTTATTTTCCAGCTGGTGACCCATTCTTTTCTTTACTTAACTATACGAATTTCAAAATTCTCAACCCATCTGGCAAATCGTTCCATCGTCTTATTTGCAGAGAGAACCCAACAACTCTTCCCCCTCCCAACAAATTTGCTCTCTCTCTCTTCCAGAATCATCCATCCCGTTCCACTCTTTAGACACCTTCTGTTTTGATATATGCACAACGACAGGAGAAGGGGACACTGGGACACCAAAAAAACCAAGCACAGAAAACGAATGAGCGGGCGAGGGATCGAAAGCTTTTCGTGTGTCTGTGTGACGTAGCGAGAACAGAAGAGAGCAAGTGTGGAGGAAGGAAATTGTCATGCGAGGAATTGAGAAGGCGTCCTCTCTCTCTCTCCCGAATTCTCTCTCTCTYTATTTCTCCATGCTTTACTTACTCTTTATTTTTCCTAATAGTTTTTTTTTACTTTTTTAAAGGGCTCCATTCTTCTTCTTCTTGGAACCGACCCTTTCCCTCTAAACTCACCGGTCCTTCCCACCACAGCATTTGTCCAAATAATAATGGCGTCAGAACGAGAACCAATCCATTCTTCATTCGACGCAACAGACATAGCAGTCGCTCCTTGTTGGACACCTAAAAAAAACAGAAGATAAAGTACCGAACAAAGAAGTTGAGTAATTCGGGTACCTCTCTGGAGACAAAATGCTGAACGAAATTGGTGCTCGAAGAGCTTTCAAGCATCCGTTGACGGCTCTCCGAGTTCTCCGGCCATCCGGACAAATGGAGGGAGAGAGACATTGTACCGTAGTGCTGGTCCAGTATTACAGATAGGATATGGATAACTGGAGTAACTGAAAAAAACGATAGTGGGGGAAAAAAGAAAAGAGAGGCGAAAAGAGATGGGAGAAACGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAACAGAAGAGAGCAAGTGT</pcr_primer_p1>
		<pcr_primer_p2>TTCTGACGCCATTATTATTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAGAACAGAAGAGAGCAAGTGTGGAGGAAGGAAATTGTCATGCGAGGAATTGAGAAGGCGTCCTCTCTCTCTCTCCCGAATTCTCTCTCTCTCTATTTCTCCATGCTTTACTTACTCTTTATTTTTCCTAATAGTTTTTTTTTACTTTTTTAAAGGGCTCCATTCTTCTTCTTCTTGGAACCGACCCTTTCCCTCTAAACTCACCGGTCCTTCCCACCACAGCATTTGTCCAAATAATAATGGCGTCAGAA</canonical_amplicon>
		<polymorphic_amplicon>GAGAACAGAAGAGAGCAAGTGTGGAGGAAGGAAATTGTCATGCGAGGAATTGAGAAGGCGTCCTCTCTCTCTCTCCCGAATTCTCTCTCTCTYTATTTCTCCATGCTTTACTTACTCTTTATTTTTCCTAATAGTTTTTTTTTACTTTTTTAAAGGGCTCCATTCTTCTTCTTCTTGGAACCGACCCTTTCCCTCTAAACTCACCGGTCCTTCCCACCACAGCATTTGTCCAAATAATAATGGCGTCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12166</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>507233</contig_pos>
        <strand>+</strand>
        <context>CGGAAGGTTT[C/T]CTAATAATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTATAATGTTCCAAAGTTAGTAGATATTAGTTTTGAATCCGGAAGGTTT</left_flank>
        <right_flank>CTAATAATTCTGATCTTCTGACCCAACATATTAACTTCCAGATATCAAAG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTGATTCTGTCAGTGTGAGTGAACGATTCGGTTGATGACAATGATGATTATCCTTTTGCCTCCCCCTTAGTTTTTTATATGCATTTTGATTTTGAATCCTGCAAGATTTTGATATCAGTACCCTGATTTTTGTATATTCGCGATTTTGGGATGTCATTTTTCTTACCCTTCGTAGTGTTTTCAGTTCGGAGCATCGAGACTCAACTTCCAGCCAAGCACTATATTCCTACTTGGATGTCCATTAGGATTGACTTTGATGCAAAGAAAATTAGAAGGATCAGGTAAGAACACAAAAAAACAACGAAACTATGAAAAAAAAAATAAAATTCAATTTTCTAGAAATCGATAGTTTGGATTCATGCCAACTTTTCAATTTATACTATCCACTGGATCCATGTGGTGCTCGGATAGAGCCGGTTCTGGATTCTCAATTGGCTTGTGTTCCACCTTATAATGTTCCAAAGTTAGTAGATATTAGTTTTGAATCCGGAAGGTTTCCTAATAATTCTGATCTTCTGACCCAACATATTAACTTCCAGATATCAAAGATATCCACTTGGTGATGGAAAATCGCAAAAGTTTGAACCCTCAATCGATACATCGCAAATGTGGGGAAGTAAAAGAATCGACAATCTTCTCTACTGCCCGAACTCAATGGTTGCTCTTCCATCTTCGGCTCTTCCCAATATTCTTCATGCATCTTATTGGGAATCATGCGACGTGGCTTCTTTCCTTCTTCGACAATTCGTTCGAGGAGAGGAGTGTGTGATGCCCACACTTTCTTCGAGTATGAATAACATTCCATTGAATATTGATCTACCTACAATGCACTGGAAACGAAGGAGGACTCGGTTTAAGGTACAATATTATTCTTGTGCAAAAAATTGGAGTCGTGGCCGAATTTCCACACAAGTTAGGCCACCGTATTTTAAGGAGAATTTTCGAAAACACAGCCGGCAAACGAGTGCTACCGTAACCCAACAATAAATATTTTCGCA</canonical>
            <polymorphic>GGTTGATTCTGTCAGTGTGAGTGAACGATTCGGTTGATGACAATGATGATTATCCTTTTGCCTCCCCCTTAGTTTTTTATATGCATTTTGATTTTGAATCCTGCAAGATTTTGATATCAGTACCCTGATTTTTGTATATTCGCGATTTTGGGATGTCATTTTTCTTACCCTTCGTAGTGTTTTCAGTTCGGAGCATCGAGACTCAACTTCCAGCCAAGCACTATATTCCTACTTGGATGTCCATTAGGATTGACTTTGATGCAAAGAAAATTAGAAGGATCAGGTAAGAACACAAAAAAACAACGAAACTATGAAAAAAAAAATAAAATTCAATTTTCTAGAAATCGATAGTTTGGATTCATGCCAACTTTTCAATTTATACTATCCACTGGATCCATGTGGTGCTCGGATAGAGCCGGTTCTGGATTCTCAATTGGCTTGTGTTCCACCTTATAATGTTCCAAAGTTAGTAGATATTAGTTTTGAATCCGGAAGGTTTYCTAATAATTCTGATCTTCTGACCCAACATATTAACTTCCAGATATCAAAGATATCCACTTGGTGATGGAAAATCGCAAAAGTTTGAACCCTCAATCGATACATCGCAAATGTGGGGAAGTAAAAGAATCGACAATCTTCTCTACTGCCCGAACTCAATGGTTGCTCTTCCATCTTCGGCTCTTCCCAATATTCTTCATGCATCTTATTGGGAATCATGCGACGTGGCTTCTTTCCTTCTTCGACAATTCGTTCGAGGAGAGGAGTGTGTGATGCCCACACTTTCTTCGAGTATGAATAACATTCCATTGAATATTGATCTACCTACAATGCACTGGAAACGAAGGAGGACTCGGTTTAAGGTACAATATTATTCTTGTGCAAAAAATTGGAGTCGTGGCCGAATTTCCACACAAGTTAGGCCACCGTATTTTAAGGAGAATTTTCGAAAACACAGCCGGCAAACGAGTGCTACCGTAACCCAACAATAAATATTTTCGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGCCAACTTTTCAATTTATAC</pcr_primer_p1>
		<pcr_primer_p2>TATCGATTGAGGGTTCAAACT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CATGCCAACTTTTCAATTTATACTATCCACTGGATCCATGTGGTGCTCGGATAGAGCCGGTTCTGGATTCTCAATTGGCTTGTGTTCCACCTTATAATGTTCCAAAGTTAGTAGATATTAGTTTTGAATCCGGAAGGTTTCCTAATAATTCTGATCTTCTGACCCAACATATTAACTTCCAGATATCAAAGATATCCACTTGGTGATGGAAAATCGCAAAAGTTTGAACCCTCAATCGATA</canonical_amplicon>
		<polymorphic_amplicon>CATGCCAACTTTTCAATTTATACTATCCACTGGATCCATGTGGTGCTCGGATAGAGCCGGTTCTGGATTCTCAATTGGCTTGTGTTCCACCTTATAATGTTCCAAAGTTAGTAGATATTAGTTTTGAATCCGGAAGGTTTYCTAATAATTCTGATCTTCTGACCCAACATATTAACTTCCAGATATCAAAGATATCCACTTGGTGATGGAAAATCGCAAAAGTTTGAACCCTCAATCGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12167</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>510435</contig_pos>
        <strand>+</strand>
        <context>CCCATGAGAT[A/C]ATTTTTTCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTAAGCTATGTTTTCAGCTTCCCAGAACTTCTGTGTGTCCCATGAGAT</left_flank>
        <right_flank>ATTTTTTCTACACGTTGAATACACTTCATGTTTATATTCTCCATCTCTGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAGCACACATCGACAGCAACCCGCTGATTTCCGTTTTGTCAGTGTTTCTGAAAATTTGAAATTTTTTGAAAATACTTTGATTTAAAAAATTATGAACCGGATCTCTTATATCGGATTCACTTCAAAACCAGTCATTTCGAAACCGGTCAATTTGCAACCGCGGTAATACGGGAGAATATATAAGTGTCAGACTACAGAAACATTTTCTATGCTCTTTTGAATGGAATAGATCCTGAAACTCGAAAAATTCAAGAAATTTTTTTTGAAACAAAAAATTAATTTTTGGATTTTTGCTAATTTCAAAATGTTCTATCAGAAAACGCTTATTTGAAACCCCTAAAGTTGTTTTTTTGTTCTGTCAGTATTAACAAGGTTGCTAAAAAACCGGTTTCGAAATTACTGGCTTCGAAGTGACGCAGTTTCGGGATTTCACGGTTCTTTTTTTATTTTTAAGCTATGTTTTCAGCTTCCCAGAACTTCTGTGTGTCCCATGAGATAATTTTTTCTACACGTTGAATACACTTCATGTTTATATTCTCCATCTCTGCTTTCTTCTCTTAAAGTACTACGGACCATTAGAAATATGAGTAGGAAACCATTCCCCTATGGGACTAACCACTTCCTAACTCCATCTGTCATTTTTCATTTATTCATTCAAATTAGGTCAATTTCATGTTCTCGTTTCCTTATGTTCCCCTCTTAAAACACCTGTCAATGAAAGAGTAAAAAGTAAAACTAACCACTTGAATTAGGTTCCGGCAGATTTTCCCTAGTCACCAAATGCATTACTGTCGTTTTGCCGGGCATTAACTGAAGTGCATGTAATGTGACGGAGCCGTGAAGAAACCGCCCGTGATAGATGAGTTTCAACATTTGTGCACTTTGTACTTTATCCTCGTACCACTCTGAAAATTTTAAAAATTACTTTCTTCAAATGCACAAAAGGTGAACCTCCGTAAAACCTGTAATTGAGAGGCCATCGGACTATTAACTTTGAG</canonical>
            <polymorphic>GAGAGCACACATCGACAGCAACCCGCTGATTTCCGTTTTGTCAGTGTTTCTGAAAATTTGAAATTTTTTGAAAATACTTTGATTTAAAAAATTATGAACCGGATCTCTTATATCGGATTCACTTCAAAACCAGTCATTTCGAAACCGGTCAATTTGCAACCGCGGTAATACGGGAGAATATATAAGTGTCAGACTACAGAAACATTTTCTATGCTCTTTTGAATGGAATAGATCCTGAAACTCGAAAAATTCAAGAAATTTTTTTTGAAACAAAAAATTAATTTTTGGATTTTTGCTAATTTCAAAATGTTCTATCAGAAAACGCTTATTTGAAACCCCTAAAGTTGTTTTTTTGTTCTGTCAGTATTAACAAGGTTGCTAAAAAACCGGTTTCGAAATTACTGGCTTCGAAGTGACGCAGTTTCGGGATTTCACGGTTCTTTTTTTATTTTTAAGCTATGTTTTCAGCTTCCCAGAACTTCTGTGTGTCCCATGAGATMATTTTTTCTACACGTTGAATACACTTCATGTTTATATTCTCCATCTCTGCTTTCTTCTCTTAAAGTACTACGGACCATTAGAAATATGAGTAGGAAACCATTCCCCTATGGGACTAACCACTTCCTAACTCCATCTGTCATTTTTCATTTATTCATTCAAATTAGGTCAATTTCATGTTCTCGTTTCCTTATGTTCCCCTCTTAAAACACCTGTCAATGAAAGAGTAAAAAGTAAAACTAACCACTTGAATTAGGTTCCGGCAGATTTTCCCTAGTCACCAAATGCATTACTGTCGTTTTGCCGGGCATTAACTGAAGTGCATGTAATGTGACGGAGCCGTGAAGAAACCGCCCGTGATAGATGAGTTTCAACATTTGTGCACTTTGTACTTTATCCTCGTACCACTCTGAAAATTTTAAAAATTACTTTCTTCAAATGCACAAAAGGTGAACCTCCGTAAAACCTGTAATTGAGAGGCCATCGGACTATTAACTTTGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>164 160 103 99 97 80 61 54 47 32 28 19 18 9 9 9 7 4</canonical_bands>
                <polymorphic_bands>263 164 99 97 80 61 54 47 32 28 19 18 9 9 9 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGTTCTATCAGAAAACGCTTA</pcr_primer_p1>
		<pcr_primer_p2>GAAAGCAGAGATGGAGAATATAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATGTTCTATCAGAAAACGCTTATTTGAAACCCCTAAAGTTGTTTTTTTGTTCTGTCAGTATTAACAAGGTTGCTAAAAAACCGGTTTCGAAATTACTGGCTTCGAAGTGACGCAGTTTCGGGATTTCACGGTTCTTTTTTTATTTTTAAGCTATGTTTTCAGCTTCCCAGAACTTCTGTGTGTCCCATGAGATAATTTTTTCTACACGTTGAATACACTTCATGTTTATATTCTCCATCTCTGCTTTC</canonical_amplicon>
		<polymorphic_amplicon>AATGTTCTATCAGAAAACGCTTATTTGAAACCCCTAAAGTTGTTTTTTTGTTCTGTCAGTATTAACAAGGTTGCTAAAAAACCGGTTTCGAAATTACTGGCTTCGAAGTGACGCAGTTTCGGGATTTCACGGTTCTTTTTTTATTTTTAAGCTATGTTTTCAGCTTCCCAGAACTTCTGTGTGTCCCATGAGATMATTTTTTCTACACGTTGAATACACTTCATGTTTATATTCTCCATCTCTGCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12181</snp_id>
        <super_contig>c006400955.Contig1</super_contig>
        <contig_pos>29245</contig_pos>
        <strand>+</strand>
        <context>AGCCTTTTTT[A/T]AAATTGATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAACTTTGAGGTTCGGAATAATGTTTCAAAGTTTTTAAAGAGCCTTTTTT</left_flank>
        <right_flank>AAATTGATTTTGATCTTACATTTCTTCAGAATTTCCAATTAACTTCTTCT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAGCAAATCTCGGATTTTCGGATTTTGGGTTTGACGTCTTTGGATAGATTCTTGATTTGGAAAATATGTTTTTCGTACATTTTCGTATATTTTTATGGGGCTTTTATTGAGCCTTTCTTTTCTAGTTTTTCGTGAAAGTTAGAGATGAATGATAACATAAAAATTTCAGCTTTTAGTTTAATTTCAATAAAATATTGTAGAAAAAAATATATAAAAAATGATTAAAAAGGACAGATTCAGTTTTAAATTAAAGCTATTTCAGTGAAGAAATGGTAGCAAAAAATGAAGTTTTTCAGAGAAATAGAGCGTATTTTTGAGATATCTAAAGAAGTACTGTCTATTCAATAAAACGTGGTTTTTGGATTACCCAAAATTTTCGTACCGTGAATTTATTTNNNNNNNNNNNNCCACGTTTTATTGAATAGACAGTAAATAGTGCAAAAAGGGAAACTTTGAGGTTCGGAATAATGTTTCAAAGTTTTTAAAGAGCCTTTTTTTAAATTGATTTTGATCTTACATTTCTTCAGAATTTCCAATTAACTTCTTCTTACAGCCCTTTATTTTCTTAACAATCCTTTTTTGTTCAATTATTTTTGAACTTCTTTTTTGACAAAAACTTTTTGCGATATATAAAAAATGACTTCATTTACCTTTAAATCCAATTTTCCAAAAAATCATATTCTTCATTTTTCCCTCGGGAAATCCCCTGTTTTCTCCATTTCCACTTAATTATCCTTCTAATTACCCAATTAATTAATTGCCCCTTTTTCATATTGCGAAATTCCTTTTCATTATTTTGTACTTCTCGTGGACAAGATGGGATGAGTGAGAAACGTGAGGCTCCGTGTGGCCGGCCGACCGTTGGCTCTGCGTCTCTTCATTTTGCATGATCTTTCGTCTCTCTGGTGTAACATGTATTTTTCGTTTTTCCCTCAAAGAAGAAGAAGAAGAAGAGGAATGATGATGATGCGTCGTTTTGTGTGTCTGTGTGTGTGTGT</canonical>
            <polymorphic>AGGAGCAAATCTCGGATTTTCGGATTTTGGGTTTGACGTCTTTGGATAGATTCTTGATTTGGAAAATATGTTTTTCGTACATTTTCGTATATTTTTATGGGGCTTTTATTGAGCCTTTCTTTTCTAGTTTTTCGTGAAAGTTAGAGATGAATGATAACATAAAAATTTCAGCTTTTAGTTTAATTTCAATAAAATATTGTAGAAAAAAATATATAAAAAATGATTAAAAAGGACAGATTCAGTTTTAAATTAAAGCTATTTCAGTGAAGAAATGGTAGCAAAAAATGAAGTTTTTCAGAGAAATAGAGCGTATTTTTGAGATATCTAAAGAAGTACTGTCTATTCAATAAAACGTGGTTTTTGGATTACCCAAAATTTTCGTACCGTGAATTTATTTNNNNNNNNNNNNCCACGTTTTATTGAATAGACAGTAAATAGTGCAAAAAGGGAAACTTTGAGGTTCGGAATAATGTTTCAAAGTTTTTAAAGAGCCTTTTTTWAAATTGATTTTGATCTTACATTTCTTCAGAATTTCCAATTAACTTCTTCTTACAGCCCTTTATTTTCTTAACAATCCTTTTTTGTTCAATTATTTTTGAACTTCTTTTTTGACAAAAACTTTTTGCGATATATAAAAAATGACTTCATTTACCTTTAAATCCAATTTTCCAAAAAATCATATTCTTCATTTTTCCCTCGGGAAATCCCCTGTTTTCTCCATTTCCACTTAATTATCCTTCTAATTACCCAATTAATTAATTGCCCCTTTTTCATATTGCGAAATTCCTTTTCATTATTTTGTACTTCTCGTGGACAAGATGGGATGAGTGAGAAACGTGAGGCTCCGTGTGGCCGGCCGACCGTTGGCTCTGCGTCTCTTCATTTTGCATGATCTTTCGTCTCTCTGGTGTAACATGTATTTTTCGTTTTTCCCTCAAAGAAGAAGAAGAAGAAGAGGAATGATGATGATGCGTCGTTTTGTGTGTCTGTGTGTGTGTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>344 246 239 156 15</canonical_bands>
                <polymorphic_bands>344 246 239 171</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>244 234 180 87 73 44 40 29 24 21 15 5 4</canonical_bands>
                <polymorphic_bands>244 234 180 87 73 55 44 29 24 21 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTTTGAGGTTCGGAATAA</pcr_primer_p1>
		<pcr_primer_p2>GAGGGAAAAATGAAGAATATGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAACTTTGAGGTTCGGAATAATGTTTCAAAGTTTTTAAAGAGCCTTTTTTTAAATTGATTTTGATCTTACATTTCTTCAGAATTTCCAATTAACTTCTTCTTACAGCCCTTTATTTTCTTAACAATCCTTTTTTGTTCAATTATTTTTGAACTTCTTTTTTGACAAAAACTTTTTGCGATATATAAAAAATGACTTCATTTACCTTTAAATCCAATTTTCCAAAAAATCATATTCTTCATTTTTCCCTC</canonical_amplicon>
		<polymorphic_amplicon>AAACTTTGAGGTTCGGAATAATGTTTCAAAGTTTTTAAAGAGCCTTTTTTWAAATTGATTTTGATCTTACATTTCTTCAGAATTTCCAATTAACTTCTTCTTACAGCCCTTTATTTTCTTAACAATCCTTTTTTGTTCAATTATTTTTGAACTTCTTTTTTGACAAAAACTTTTTGCGATATATAAAAAATGACTTCATTTACCTTTAAATCCAATTTTCCAAAAAATCATATTCTTCATTTTTCCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12230</snp_id>
        <super_contig>c006400955.Contig1</super_contig>
        <contig_pos>29841</contig_pos>
        <strand>+</strand>
        <context>TTTCGTTGTT[C/T]TTGATTAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGGGGATAACAGATTTTTATGATTTTGATAAAATTGCTTTTTCGTTGTT</left_flank>
        <right_flank>TTGATTAAATATTTTTGAACAAAAAAATACTTTTTGTAAACGGAAATTGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAACTTCTTTTTTGACAAAAACTTTTTGCGATATATAAAAAATGACTTCATTTACCTTTAAATCCAATTTTCCAAAAAATCATATTCTTCATTTTTCCCTCGGGAAATCCCCTGTTTTCTCCATTTCCACTTAATTATCCTTCTAATTACCCAATTAATTAATTGCCCCTTTTTCATATTGCGAAATTCCTTTTCATTATTTTGTACTTCTCGTGGACAAGATGGGATGAGTGAGAAACGTGAGGCTCCGTGTGGCCGGCCGACCGTTGGCTCTGCGTCTCTTCATTTTGCATGATCTTTCGTCTCTCTGGTGTAACATGTATTTTTCGTTTTTCCCTCAAAGAAGAAGAAGAAGAAGAGGAATGATGATGATGCGTCGTTTTGTGTGTCTGTGTGTGTGTGTGTGTTAAGCCGGAAAACTGAAGGGATGAAAATTCTTTCTGTTTGGAAGGGGATAACAGATTTTTATGATTTTGATAAAATTGCTTTTTCGTTGTTTTTGATTAAATATTTTTGAACAAAAAAATACTTTTTGTAAACGGAAATTGGAAAGGAAATTGAAAAAGGAGGAATCATAGTCTTTATTATAGAGTTGGCTTCTCCAAAATCAACATATTCTGAATCAGAATATCGTCACTGTTTTTCCTTCTTTTCATTTTCCAAATACAAATTTCATTCACTTCTTGTTATTCATTTTTTCAAAAACTACAAAATATTATTTTTCCCATTTTTAGTCATTTCCCATTTCAGCTACTCATTTACCTCATATTCTTTCCTCTTTTTTCCCAGTAATTCAGAAAGAATATCCTCATTCTTCTTCCCTGATCCTTATACTTTTTCCTGGTTCATTGACCCCTATTCTTCTTCTATAATTCTTTGATTCTAATCCCTTTTTTTCTATTCAATTGTCTATTTTTCAGGAGATGACTCTCCACGAGCCACCCGCCAAACTCAATAGGCAGACATCGACGCTTTTAAGGCCGCCGACACTGAACAAAC</canonical>
            <polymorphic>TGAACTTCTTTTTTGACAAAAACTTTTTGCGATATATAAAAAATGACTTCATTTACCTTTAAATCCAATTTTCCAAAAAATCATATTCTTCATTTTTCCCTCGGGAAATCCCCTGTTTTCTCCATTTCCACTTAATTATCCTTCTAATTACCCAATTAATTAATTGCCCCTTTTTCATATTGCGAAATTCCTTTTCATTATTTTGTACTTCTCGTGGACAAGATGGGATGAGTGAGAAACGTGAGGCTCCGTGTGGCCGGCCGACCGTTGGCTCTGCGTCTCTTCATTTTGCATGATCTTTCGTCTCTCTGGTGTAACATGTATTTTTCGTTTTTCCCTCAAAGAAGAAGAAGAAGAAGAGGAATGATGATGATGCGTCGTTTTGTGTGTCTGTGTGTGTGTGTGTGTTAAGCCGGAAAACTGAAGGGATGAAAATTCTTTCTGTTTGGAAGGGGATAACAGATTTTTATGATTTTGATAAAATTGCTTTTTCGTTGTTYTTGATTAAATATTTTTGAACAAAAAAATACTTTTTGTAAACGGAAATTGGAAAGGAAATTGAAAAAGGAGGAATCATAGTCTTTATTATAGAGTTGGCTTCTCCAAAATCAACATATTCTGAATCAGAATATCGTCACTGTTTTTCCTTCTTTTCATTTTCCAAATACAAATTTCATTCACTTCTTGTTATTCATTTTTTCAAAAACTACAAAATATTATTTTTCCCATTTTTAGTCATTTCCCATTTCAGCTACTCATTTACCTCATATTCTTTCCTCTTTTTTCCCAGTAATTCAGAAAGAATATCCTCATTCTTCTTCCCTGATCCTTATACTTTTTCCTGGTTCATTGACCCCTATTCTTCTTCTATAATTCTTTGATTCTAATCCCTTTTTTTCTATTCAATTGTCTATTTTTCAGGAGATGACTCTCCACGAGCCACCCGCCAAACTCAATAGGCAGACATCGACGCTTTTAAGGCCGCCGACACTGAACAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATGAAAATTCTTTCTGTTTG</pcr_primer_p1>
		<pcr_primer_p2>GAAATTTGTATTTGGAAAATGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGATGAAAATTCTTTCTGTTTGGAAGGGGATAACAGATTTTTATGATTTTGATAAAATTGCTTTTTCGTTGTTTTTGATTAAATATTTTTGAACAAAAAAATACTTTTTGTAAACGGAAATTGGAAAGGAAATTGAAAAAGGAGGAATCATAGTCTTTATTATAGAGTTGGCTTCTCCAAAATCAACATATTCTGAATCAGAATATCGTCACTGTTTTTCCTTCTTTTCATTTTCCAAATACAAATTTC</canonical_amplicon>
		<polymorphic_amplicon>GGATGAAAATTCTTTCTGTTTGGAAGGGGATAACAGATTTTTATGATTTTGATAAAATTGCTTTTTCGTTGTTYTTGATTAAATATTTTTGAACAAAAAAATACTTTTTGTAAACGGAAATTGGAAAGGAAATTGAAAAAGGAGGAATCATAGTCTTTATTATAGAGTTGGCTTCTCCAAAATCAACATATTCTGAATCAGAATATCGTCACTGTTTTTCCTTCTTTTCATTTTCCAAATACAAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12231</snp_id>
        <super_contig>c006400955.Contig1</super_contig>
        <contig_pos>30074</contig_pos>
        <strand></strand>
        <context>TTCCCATTTT[T/C]AGTCATTTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCTTGTTATTCATTTTTTCAAAAACTACAAAATATTATTTTTCCCATTTT</left_flank>
        <right_flank>AGTCATTTCCCATTTCAGCTACTCATTTACCTCATATTCTTTCCTCTTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAAACGTGAGGCTCCGTGTGGCCGGCCGACCGTTGGCTCTGCGTCTCTTCATTTTGCATGATCTTTCGTCTCTCTGGTGTAACATGTATTTTTCGTTTTTCCCTCAAAGAAGAAGAAGAAGAAGAGGAATGATGATGATGCGTCGTTTTGTGTGTCTGTGTGTGTGTGTGTGTTAAGCCGGAAAACTGAAGGGATGAAAATTCTTTCTGTTTGGAAGGGGATAACAGATTTTTATGATTTTGATAAAATTGCTTTTTCGTTGTTTTTGATTAAATATTTTTGAACAAAAAAATACTTTTTGTAAACGGAAATTGGAAAGGAAATTGAAAAAGGAGGAATCATAGTCTTTATTATAGAGTTGGCTTCTCCAAAATCAACATATTCTGAATCAGAATATCGTCACTGTTTTTCCTTCTTTTCATTTTCCAAATACAAATTTCATTCACTTCTTGTTATTCATTTTTTCAAAAACTACAAAATATTATTTTTCCCATTTTTAGTCATTTCCCATTTCAGCTACTCATTTACCTCATATTCTTTCCTCTTTTTTCCCAGTAATTCAGAAAGAATATCCTCATTCTTCTTCCCTGATCCTTATACTTTTTCCTGGTTCATTGACCCCTATTCTTCTTCTATAATTCTTTGATTCTAATCCCTTTTTTTCTATTCAATTGTCTATTTTTCAGGAGATGACTCTCCACGAGCCACCCGCCAAACTCAATAGGCAGACATCGACGCTTTTAAGGCCGCCGACACTGAACAAACCGATACTCACTTTTGCAGACAATGATTGTCTTAAAACCCCAACTATGAGTGATATGTTAAAGGTGAGGTCTCAAAAGCCATAATCGTTTTTTCCAAGAATAGGCGTTCTATCTTAATTACCGCAAAACCTCCTAACTTTAAACTTTGAGCTAATTTATCTCGGTTCTTGTCAAAGATATGTGAAAGTTATCAACTGATAAACTCTTTATCATAACATCAGAAATGTTTTGATA</canonical>
            <polymorphic>GAGAAACGTGAGGCTCCGTGTGGCCGGCCGACCGTTGGCTCTGCGTCTCTTCATTTTGCATGATCTTTCGTCTCTCTGGTGTAACATGTATTTTTCGTTTTTCCCTCAAAGAAGAAGAAGAAGAAGAGGAATGATGATGATGCGTCGTTTTGTGTGTCTGTGTGTGTGTGTGTGTTAAGCCGGAAAACTGAAGGGATGAAAATTCTTTCTGTTTGGAAGGGGATAACAGATTTTTATGATTTTGATAAAATTGCTTTTTCGTTGTTTTTGATTAAATATTTTTGAACAAAAAAATACTTTTTGTAAACGGAAATTGGAAAGGAAATTGAAAAAGGAGGAATCATAGTCTTTATTATAGAGTTGGCTTCTCCAAAATCAACATATTCTGAATCAGAATATCGTCACTGTTTTTCCTTCTTTTCATTTTCCAAATACAAATTTCATTCACTTCTTGTTATTCATTTTTTCAAAAACTACAAAATATTATTTTTCCCATTTTYAGTCATTTCCCATTTCAGCTACTCATTTACCTCATATTCTTTCCTCTTTTTTCCCAGTAATTCAGAAAGAATATCCTCATTCTTCTTCCCTGATCCTTATACTTTTTCCTGGTTCATTGACCCCTATTCTTCTTCTATAATTCTTTGATTCTAATCCCTTTTTTTCTATTCAATTGTCTATTTTTCAGGAGATGACTCTCCACGAGCCACCCGCCAAACTCAATAGGCAGACATCGACGCTTTTAAGGCCGCCGACACTGAACAAACCGATACTCACTTTTGCAGACAATGATTGTCTTAAAACCCCAACTATGAGTGATATGTTAAAGGTGAGGTCTCAAAAGCCATAATCGTTTTTTCCAAGAATAGGCGTTCTATCTTAATTACCGCAAAACCTCCTAACTTTAAACTTTGAGCTAATTTATCTCGGTTCTTGTCAAAGATATGTGAAAGTTATCAACTGATAAACTCTTTATCATAACATCAGAAATGTTTTGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTTTTCATTTTCCAAATACA</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGGGATTAGAATCAAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCTTTTCATTTTCCAAATACAAATTTCATTCACTTCTTGTTATTCATTTTTTCAAAAACTACAAAATATTATTTTTCCCATTTTTAGTCATTTCCCATTTCAGCTACTCATTTACCTCATATTCTTTCCTCTTTTTTCCCAGTAATTCAGAAAGAATATCCTCATTCTTCTTCCCTGATCCTTATACTTTTTCCTGGTTCATTGACCCCTATTCTTCTTCTATAATTCTTTGATTCTAATCCCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CTTCTTTTCATTTTCCAAATACAAATTTCATTCACTTCTTGTTATTCATTTTTTCAAAAACTACAAAATATTATTTTTCCCATTTTYAGTCATTTCCCATTTCAGCTACTCATTTACCTCATATTCTTTCCTCTTTTTTCCCAGTAATTCAGAAAGAATATCCTCATTCTTCTTCCCTGATCCTTATACTTTTTCCTGGTTCATTGACCCCTATTCTTCTTCTATAATTCTTTGATTCTAATCCCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12233</snp_id>
        <super_contig>c006400955.Contig1</super_contig>
        <contig_pos>31268</contig_pos>
        <strand>+</strand>
        <context>AATTATCTCG[G/T]TCCTCCATAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTTTGATTCGATAATGGGCACTTCTTTTTTCAAATCCTAATTATCTCG</left_flank>
        <right_flank>TCCTCCATAGAAGTGTTGAATTTACTATTATTAGATAAACGCTTCTGGTT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTTACAAACAAAGAACAGAGGCCCGGCCCGTACCCACGCGACAAGGTCCGGCCACCTTATGCCTTGTAACTTTGTTCATAGACAAGACACAACTCTCTAAATAGTATTATTTTTTAGTACTCGCTGATTTCTATTATATCTAATTCAGTTGATTCGAAAATATTGATTCAAAAAGAAACCATGGCAAGGCCCACGAAGGGCCCGGCCAAGGCGCGGTCGCAAGTATGGCTCAAACATTATAGTGTGGGGGCCCTTCTATTACAGGTTTTACGGTATTTTTCTTATCTTTATTATCTCGGTTCCCAATGAAAGTGTTAACATGGAATCAATTAATGAAATAAACAAGATGAAATTTCCAATACTTTATTAGTTGTACATTTTTTCATGTCTCTGACAGGAACTACAATAATTTGGTTTAGGTAACCGAAATCCTCGGTTCCTGTTCATTTTTTGATTCGATAATGGGCACTTCTTTTTTCAAATCCTAATTATCTCGTTCCTCCATAGAAGTGTTGAATTTACTATTATTAGATAAACGCTTCTGGTTGTGACTTATGCAAATTTTCTTTAGTTTGTACAAATCGAATTTGTGCAATGAGTTATTGCTCAACCAGCTGAAACACCTACTCAATTTAGCTATATTATCTGTAATTTAATTAGACACGTCATCTTCTAGTCATGTAAGGAAAACAAATCTTCGGAAGAGTATGTTTTTTGTGGGAAAAAGGGAAACATCAAATGAAGGGGTATCGTAAGCACTCTTATAGAATGTCCCTCAAACTGTCAGTCAACTTTGAACCCATATAGCGCATTTCATGTTGAAGATATCCACAAATGGTCAACTGTCATGATGTTTATCATAACATCAAAAATAATTTATCAGTTGACTACTTTTTGATATCTTTCAGAGGAACCGAGATAAATTGGCTCAAAGTTAGAACTGCTGAAAATCGGAAAAAGCGGGCAATCTCGAATTTCTTGCTTGCTCTTTTCATAC</canonical>
            <polymorphic>AAAGTTACAAACAAAGAACAGAGGCCCGGCCCGTACCCACGCGACAAGGTCCGGCCACCTTATGCCTTGTAACTTTGTTCATAGACAAGACACAACTCTCTAAATAGTATTATTTTTTAGTACTCGCTGATTTCTATTATATCTAATTCAGTTGATTCGAAAATATTGATTCAAAAAGAAACCATGGCAAGGCCCACGAAGGGCCCGGCCAAGGCGCGGTCGCAAGTATGGCTCAAACATTATAGTGTGGGGGCCCTTCTATTACAGGTTTTACGGTATTTTTCTTATCTTTATTATCTCGGTTCCCAATGAAAGTGTTAACATGGAATCAATTAATGAAATAAACAAGATGAAATTTCCAATACTTTATTAGTTGTACATTTTTTCATGTCTCTGACAGGAACTACAATAATTTGGTTTAGGTAACCGAAATCCTCGGTTCCTGTTCATTTTTTGATTCGATAATGGGCACTTCTTTTTTCAAATCCTAATTATCTCGKTCCTCCATAGAAGTGTTGAATTTACTATTATTAGATAAACGCTTCTGGTTGTGACTTATGCAAATTTTCTTTAGTTTGTACAAATCGAATTTGTGCAATGAGTTATTGCTCAACCAGCTGAAACACCTACTCAATTTAGCTATATTATCTGTAATTTAATTAGACACGTCATCTTCTAGTCATGTAAGGAAAACAAATCTTCGGAAGAGTATGTTTTTTGTGGGAAAAAGGGAAACATCAAATGAAGGGGTATCGTAAGCACTCTTATAGAATGTCCCTCAAACTGTCAGTCAACTTTGAACCCATATAGCGCATTTCATGTTGAAGATATCCACAAATGGTCAACTGTCATGATGTTTATCATAACATCAAAAATAATTTATCAGTTGACTACTTTTTGATATCTTTCAGAGGAACCGAGATAAATTGGCTCAAAGTTAGAACTGCTGAAAATCGGAAAAAGCGGGCAATCTCGAATTTCTTGCTTGCTCTTTTCATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAGGCGTTCTATCTTAATTACC</pcr_primer_p1>
		<pcr_primer_p2>ACAACCAGAAGCGTTTATCTA</pcr_primer_p2>
		<pcr_amplicon_size>882</pcr_amplicon_size>
		<canonical_amplicon>GTTCCTCCATAGAAGTGTTGAATTTACTATTATTAGATAAACGCTTCTGGTTGT</canonical_amplicon>
		<polymorphic_amplicon>GKTCCTCCATAGAAGTGTTGAATTTACTATTATTAGATAAACGCTTCTGGTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12234</snp_id>
        <super_contig>c006400955.Contig1</super_contig>
        <contig_pos>49543</contig_pos>
        <strand>+</strand>
        <context>AAGTGCAACA[A/G]CCATAAGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCCTTCCGAAACATCCCACAACTCAATGGTACTGTTCGAAAGTGCAACA</left_flank>
        <right_flank>CCATAAGATTAGCAGCCAATGGATGCCATCTCAACGATGTAATTTTCTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGGACATAAACGGAGCCAACGGCAAGAGATACGGCGAATCGTAGATCACTTCGAACATGTTCACAAATCGATCTCCCTTTCCACTCAAAAACAACACATTCGAGTCGTAATCGTAGTGTGGAACGAGTGGTTGAGTGGCCGAATCAATGACTTGTGTGTAGATGTGTCTGAGGTCTACCGTAGTCGCATCGTACATCTGAACCTGTCGTTGTGAGCTTTTCGTCATTCCAACCACAATCACAATGCGATCGTCGCAGGCGAAGAGGACACGAGCCGCGCGGGTCGACTCGACAACTGACTTCCGTTCGTAGACTTTCTGCTCAGCAGTGGCTGGTTCATGGACGAAGAGTGTTGCATCTTTTCCAACAGAAGCGATTCTCCGCCCATCAGCCGACCAAGCGATTCCAAGAATCCCAGATTGATGTTGAACGAATCGACTGTACAGTTTGCCTTCCGAAACATCCCACAACTCAATGGTACTGTTCGAAAGTGCAACAACCATAAGATTAGCAGCCAATGGATGCCATCTCAACGATGTAATTTTCTCTCCGCAAATCTTGATCTGTTTCTCCGGCTCCATCTCATTTCGTGGTCCATCTGATTCCGAGAAACGCCACAAATTGATCTGTCCACAATCCGTTCCCACTGCAAGTTGCGACTCATCGAATGGATTCCATTGAAGATCAGTGACAGTCGCCTTATTGAAAATGCCATCCATAACTCCATCGGGAAGCTTTCCAGGGGCATCAACATCATAGATTCCAACAACTCCAAGTCCAGCCAATGGCACCGCTGCGTACTTATTCGAGCAACAAACTCCGTTAGATTCTGGAGGCAGACGAGTATTCACATTGCGAAGATTCGAGAACACATGACCAGACTTCGTTCCTTGTTGTCCATCCACGTGGCGGAATTTCGATGTGATCTGTCCAACGACACAAGACTTCGGACGAACTCTCTGCGAGAGTGGGACTCGGTTCGATGCTCCAATTGGCTTC</canonical>
            <polymorphic>TGGGGACATAAACGGAGCCAACGGCAAGAGATACGGCGAATCGTAGATCACTTCGAACATGTTCACAAATCGATCTCCCTTTCCACTCAAAAACAACACATTCGAGTCGTAATCGTAGTGTGGAACGAGTGGTTGAGTGGCCGAATCAATGACTTGTGTGTAGATGTGTCTGAGGTCTACCGTAGTCGCATCGTACATCTGAACCTGTCGTTGTGAGCTTTTCGTCATTCCAACCACAATCACAATGCGATCGTCGCAGGCGAAGAGGACACGAGCCGCGCGGGTCGACTCGACAACTGACTTCCGTTCGTAGACTTTCTGCTCAGCAGTGGCTGGTTCATGGACGAAGAGTGTTGCATCTTTTCCAACAGAAGCGATTCTCCGCCCATCAGCCGACCAAGCGATTCCAAGAATCCCAGATTGATGTTGAACGAATCGACTGTACAGTTTGCCTTCCGAAACATCCCACAACTCAATGGTACTGTTCGAAAGTGCAACARCCATAAGATTAGCAGCCAATGGATGCCATCTCAACGATGTAATTTTCTCTCCGCAAATCTTGATCTGTTTCTCCGGCTCCATCTCATTTCGTGGTCCATCTGATTCCGAGAAACGCCACAAATTGATCTGTCCACAATCCGTTCCCACTGCAAGTTGCGACTCATCGAATGGATTCCATTGAAGATCAGTGACAGTCGCCTTATTGAAAATGCCATCCATAACTCCATCGGGAAGCTTTCCAGGGGCATCAACATCATAGATTCCAACAACTCCAAGTCCAGCCAATGGCACCGCTGCGTACTTATTCGAGCAACAAACTCCGTTAGATTCTGGAGGCAGACGAGTATTCACATTGCGAAGATTCGAGAACACATGACCAGACTTCGTTCCTTGTTGTCCATCCACGTGGCGGAATTTCGATGTGATCTGTCCAACGACACAAGACTTCGGACGAACTCTCTGCGAGAGTGGGACTCGGTTCGATGCTCCAATTGGCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCGTTCGTAGACTTTCTG</pcr_primer_p1>
		<pcr_primer_p2>TTGCGGAGAGAAAATTACAT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TTCCGTTCGTAGACTTTCTGCTCAGCAGTGGCTGGTTCATGGACGAAGAGTGTTGCATCTTTTCCAACAGAAGCGATTCTCCGCCCATCAGCCGACCAAGCGATTCCAAGAATCCCAGATTGATGTTGAACGAATCGACTGTACAGTTTGCCTTCCGAAACATCCCACAACTCAATGGTACTGTTCGAAAGTGCAACAACCATAAGATTAGCAGCCAATGGATGCCATCTCAACGATGTAATTTTCTCTCCGCAA</canonical_amplicon>
		<polymorphic_amplicon>TTCCGTTCGTAGACTTTCTGCTCAGCAGTGGCTGGTTCATGGACGAAGAGTGTTGCATCTTTTCCAACAGAAGCGATTCTCCGCCCATCAGCCGACCAAGCGATTCCAAGAATCCCAGATTGATGTTGAACGAATCGACTGTACAGTTTGCCTTCCGAAACATCCCACAACTCAATGGTACTGTTCGAAAGTGCAACARCCATAAGATTAGCAGCCAATGGATGCCATCTCAACGATGTAATTTTCTCTCCGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12235</snp_id>
        <super_contig>c006400955.Contig1</super_contig>
        <contig_pos>51441</contig_pos>
        <strand>+</strand>
        <context>TGCATGTGGC[G/T]AGGAGTTGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTCTCGAGAGCTTCCAAATCTTCACTGGCTCATCACGACTGCATGTGGC</left_flank>
        <right_flank>AGGAGTTGATCAGCGTACGTCATGAATCCGAAATCCGAAACTTGCTCTGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAATCGTTAGAGAAAATTGTGTCTTTTTTCTTCTGAAGCTTCCTAGAACCTTTCAGAATTCTTTTCCCACCCATCCTTACCGTCGTGAATCCAGTGCTGATCAATCGATTCCCAGCGAACAACACTCTCGCCTCTCGTCCCATTCCGCCGTGTCCCTCCAGCGTCTGAATCGGTACCGTATTGGCACGTGGATCGTACACAACAATCTGTCGTCCCTTATCTCCACTGACAGCCAGAAGACGTCCGTCTTCACTCCAACCCATGGCTTGAACCTTATCAGTGATGCCCGTCAACTCAATAGCTACCCGTTTCGTAGAGATATCCGTGATGTAGGCAGAGTTATGCGATCCAACAGCCAGAAGATTGTCGGCTGTCGAGTGGGCCTTGAGGCACTCAGTGACGACACCAGCTCCAACGTTTACTTCTGTGGCCAGCTGAGGAGAAGAGTCTCTCGAGAGCTTCCAAATCTTCACTGGCTCATCACGACTGCATGTGGCGAGGAGTTGATCAGCGTACGTCATGAATCCGAAATCCGAAACTTGCTCTGAAAATTCGAGCGATGAAGTTTTTGCGTTTTGTAGATGATGTCAAACCTATCAAAACCATTTCAAACCCTAAATAATGCGGCTCCTAGACGTTTCAGAACCCGAGGTGGTTGTGAAACGTCGTGGTTCCGAAACGTCCAGGAGCCAATATTGCCTCTAGAATCCCCCAGAAACCATTCAAAACTTACCCCCATGAGCCGCAATGATCCAAATATCGTTTCGAGTCCGCCGCCCTTTGGCTCCAATCGGCAAAACTCCAAGCTTGCCGCCTTCGCCCTCAATGTGAAACGCCAGAAAGTCTGCGGACGCATGAATTCCGTCATTTGTACAAGAGAGGTTACCGACGGGCAAGTCGAAGATTGTGTCCTGTAAATAATAGGGATGTATGGGCTAGGAATCCAAAAGGAAACTACGGCTAATTTCAGCTATTTTTGTCATTTCTCAGAAAAAAAA</canonical>
            <polymorphic>GGAAATCGTTAGAGAAAATTGTGTCTTTTTTCTTCTGAAGCTTCCTAGAACCTTTCAGAATTCTTTTCCCACCCATCCTTACCGTCGTGAATCCAGTGCTGATCAATCGATTCCCAGCGAACAACACTCTCGCCTCTCGTCCCATTCCGCCGTGTCCCTCCAGCGTCTGAATCGGTACCGTATTGGCACGTGGATCGTACACAACAATCTGTCGTCCCTTATCTCCACTGACAGCCAGAAGACGTCCGTCTTCACTCCAACCCATGGCTTGAACCTTATCAGTGATGCCCGTCAACTCAATAGCTACCCGTTTCGTAGAGATATCCGTGATGTAGGCAGAGTTATGCGATCCAACAGCCAGAAGATTGTCGGCTGTCGAGTGGGCCTTGAGGCACTCAGTGACGACACCAGCTCCAACGTTTACTTCTGTGGCCAGCTGAGGAGAAGAGTCTCTCGAGAGCTTCCAAATCTTCACTGGCTCATCACGACTGCATGTGGCKAGGAGTTGATCAGCGTACGTCATGAATCCGAAATCCGAAACTTGCTCTGAAAATTCGAGCGATGAAGTTTTTGCGTTTTGTAGATGATGTCAAACCTATCAAAACCATTTCAAACCCTAAATAATGCGGCTCCTAGACGTTTCAGAACCCGAGGTGGTTGTGAAACGTCGTGGTTCCGAAACGTCCAGGAGCCAATATTGCCTCTAGAATCCCCCAGAAACCATTCAAAACTTACCCCCATGAGCCGCAATGATCCAAATATCGTTTCGAGTCCGCCGCCCTTTGGCTCCAATCGGCAAAACTCCAAGCTTGCCGCCTTCGCCCTCAATGTGAAACGCCAGAAAGTCTGCGGACGCATGAATTCCGTCATTTGTACAAGAGAGGTTACCGACGGGCAAGTCGAAGATTGTGTCCTGTAAATAATAGGGATGTATGGGCTAGGAATCCAAAAGGAAACTACGGCTAATTTCAGCTATTTTTGTCATTTCTCAGAAAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGTTATGCGATCCAACAG</pcr_primer_p1>
		<pcr_primer_p2>ATCTACAAAACGCAAAAACTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGAGTTATGCGATCCAACAGCCAGAAGATTGTCGGCTGTCGAGTGGGCCTTGAGGCACTCAGTGACGACACCAGCTCCAACGTTTACTTCTGTGGCCAGCTGAGGAGAAGAGTCTCTCGAGAGCTTCCAAATCTTCACTGGCTCATCACGACTGCATGTGGCGAGGAGTTGATCAGCGTACGTCATGAATCCGAAATCCGAAACTTGCTCTGAAAATTCGAGCGATGAAGTTTTTGCGTTTTGTAGAT</canonical_amplicon>
		<polymorphic_amplicon>AGAGTTATGCGATCCAACAGCCAGAAGATTGTCGGCTGTCGAGTGGGCCTTGAGGCACTCAGTGACGACACCAGCTCCAACGTTTACTTCTGTGGCCAGCTGAGGAGAAGAGTCTCTCGAGAGCTTCCAAATCTTCACTGGCTCATCACGACTGCATGTGGCKAGGAGTTGATCAGCGTACGTCATGAATCCGAAATCCGAAACTTGCTCTGAAAATTCGAGCGATGAAGTTTTTGCGTTTTGTAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12236</snp_id>
        <super_contig>c006400955.Contig1</super_contig>
        <contig_pos>54456</contig_pos>
        <strand>+</strand>
        <context>CGAGTGCAAA[C/T]GAGGAAGAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCAGAAGAGTCCCAAACTGACCAACACAACAACAACAAACGAGTGCAAA</left_flank>
        <right_flank>GAGGAAGAGTGGAGCTCCAGAGAGAGAGAGAGAGCCATATAAATTGCACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAATGGGCGCGAGAAAAAAAAAAGTGAAAAGTGAATGTGTGTAAAAAAAAGTGGCGGGTGAAGTGGAGACAAAAATTTGTATAATGCTGGTAGATCAAAAGTTAAAAAATGTCCGGAATTTCTTGAATTTTTCAATGTAGTGTTTTTAGATTCCAAATCTAGCTATAGTACGAAATAAAAGAATCCGACCAACCCTAGCTATTACTCATTCCACTGACATTTCTGCTTCAGCAGAAACCTCCATTCATCAAAAAATCTTGATATAAGGAGCTCCAGCGGGCTACTTTGTATGCATGAGCCGAGCCAATGCTGAGCAATCGAAGGGGAATATCCAAAGAGAGAAAAATGATACCAAATCGCGAAATTTGACATCAAATTTTCTCTCGCCAAATCTCGGGAGCAACTTCTACTCAGAGGGGGCTTAGAAGAAAGATGAGTCAGTTTGCCTCCAGAAGAGTCCCAAACTGACCAACACAACAACAACAAACGAGTGCAAATGAGGAAGAGTGGAGCTCCAGAGAGAGAGAGAGAGCCATATAAATTGCACATAGCTTAACTGACCAGAAGGGCGGCCTAATTCCCTCCTCGTCCTTCTGGTGGTGCTCAAGTCTTCTGAAGTCTTAAGCTTCCTCTCTCAGCAATCGAACGCCTCTAATGAATCCGCGAAAAGCGCGCGGAACGTCTAGAGAGTCTGAGAGACGCTGAGCAACCCAATTTAGTCATTGTCCCCCTTCGCAATAAGAGAAAGCTAACCAGTCAGTCAAGCCAAAACAATTGTGAATTCAATTGTGCGGCAAAGGAGGGGGGATGGAATAAGAAAATGAGCAAGAGAGAAAGGACATATGGTGGAGATCACTATCCGAAGGGTATAATCTTAGAATCTTGTTATATGGAGCCATATATAACGTCATCTAATTGAAAAAACGTAACAGAGGGTTCTATTTTTGTGGATCTGGTAGTGAGAGGGAAAAATCTGTAGAGCTAAAAAATGAATTGAA</canonical>
            <polymorphic>ATGAATGGGCGCGAGAAAAAAAAAAGTGAAAAGTGAATGTGTGTAAAAAAAAGTGGCGGGTGAAGTGGAGACAAAAATTTGTATAATGCTGGTAGATCAAAAGTTAAAAAATGTCCGGAATTTCTTGAATTTTTCAATGTAGTGTTTTTAGATTCCAAATCTAGCTATAGTACGAAATAAAAGAATCCGACCAACCCTAGCTATTACTCATTCCACTGACATTTCTGCTTCAGCAGAAACCTCCATTCATCAAAAAATCTTGATATAAGGAGCTCCAGCGGGCTACTTTGTATGCATGAGCCGAGCCAATGCTGAGCAATCGAAGGGGAATATCCAAAGAGAGAAAAATGATACCAAATCGCGAAATTTGACATCAAATTTTCTCTCGCCAAATCTCGGGAGCAACTTCTACTCAGAGGGGGCTTAGAAGAAAGATGAGTCAGTTTGCCTCCAGAAGAGTCCCAAACTGACCAACACAACAACAACAAACGAGTGCAAAYGAGGAAGAGTGGAGCTCCAGAGAGAGAGAGAGAGCCATATAAATTGCACATAGCTTAACTGACCAGAAGGGCGGCCTAATTCCCTCCTCGTCCTTCTGGTGGTGCTCAAGTCTTCTGAAGTCTTAAGCTTCCTCTCTCAGCAATCGAACGCCTCTAATGAATCCGCGAAAAGCGCGCGGAACGTCTAGAGAGTCTGAGAGACGCTGAGCAACCCAATTTAGTCATTGTCCCCCTTCGCAATAAGAGAAAGCTAACCAGTCAGTCAAGCCAAAACAATTGTGAATTCAATTGTGCGGCAAAGGAGGGGGGATGGAATAAGAAAATGAGCAAGAGAGAAAGGACATATGGTGGAGATCACTATCCGAAGGGTATAATCTTAGAATCTTGTTATATGGAGCCATATATAACGTCATCTAATTGAAAAAACGTAACAGAGGGTTCTATTTTTGTGGATCTGGTAGTGAGAGGGAAAAATCTGTAGAGCTAAAAAATGAATTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAATATCCAAAGAGAGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTTCTGGTCAGTTAAGCTATGTG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GGAATATCCAAAGAGAGAAAAATGATACCAAATCGCGAAATTTGACATCAAATTTTCTCTCGCCAAATCTCGGGAGCAACTTCTACTCAGAGGGGGCTTAGAAGAAAGATGAGTCAGTTTGCCTCCAGAAGAGTCCCAAACTGACCAACACAACAACAACAAACGAGTGCAAATGAGGAAGAGTGGAGCTCCAGAGAGAGAGAGAGAGCCATATAAATTGCACATAGCTTAACTGACCAGAAG</canonical_amplicon>
		<polymorphic_amplicon>GGAATATCCAAAGAGAGAAAAATGATACCAAATCGCGAAATTTGACATCAAATTTTCTCTCGCCAAATCTCGGGAGCAACTTCTACTCAGAGGGGGCTTAGAAGAAAGATGAGTCAGTTTGCCTCCAGAAGAGTCCCAAACTGACCAACACAACAACAACAAACGAGTGCAAAYGAGGAAGAGTGGAGCTCCAGAGAGAGAGAGAGAGCCATATAAATTGCACATAGCTTAACTGACCAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12239</snp_id>
        <super_contig>c006400955.Contig1</super_contig>
        <contig_pos>58916</contig_pos>
        <strand>+</strand>
        <context>TATAARTTTT[C/T]AAAAGAGAca</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAATCATGGATAGGTTTGGGGGTCATGAGAGAGACAACATATAAGTTTT</left_flank>
        <right_flank>AAAAGAGACATTTGAGTAGCCTAACTTTCAAGATTCCTAGGCCATCAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAACGATGGTGATGGCATCGTCTGAAAGCTCTCGAACACAAAAAATATGATACGAAAAGTGTGTAAAAATTGATATATTTTTCGTGTATAAACATTCGAGATGATTCATCGAATGAAGAGAGAAAAAGAGCGATGATGACCCGGCGGGGCACGATTCAATCAACTAGAAACTTCTAGAAACTGTATAGTACTAAATTCTAGGGACCAAAAGATTTCAAATTTTGGACAGAAAATGAGCACAACTGCAAAATAAGCCTAATCCGTACCTCTCTAGGGGTGGTTCTCAAGCTAATTACACGAAAAAGCGGGAAAAGAGAGATACACACGACAGATGTCCTTCCTGTCCTCTCGCTCGCTTGGTGCTTATTAATTTTTTTGTCCGTGTCCGTTCGGTTTGGGACATTCAGTCACCATAATAACCTCCAGGCCATATGAGGAGAGATACCCTTTAATCATGGATAGGTTTGGGGGTCATGAGAGAGACAACATATAAGTTTTTAAAAGAGACATTTGAGTAGCCTAACTTTCAAGATTCCTAGGCCATCAAAAGTTTTAGGAAGGCATCCTGCAAAAGGATTCTAGACCATTGATAAGGCCTGGCCTAACTGTTAAGGTTTCTAGGCCAGTCTGACTTCCCAGAATGGATTTTTTCGGTCACCAGGAACATTTTTCAGGTGAAGAGACCAACATACTTGCAACGGGCCGGGTTTTTTTTCAGAATTTTCAGGGCCCGGCCCGGACCGCGGGCCAGGCCCTGATTTTGCAAGTATGGAGATCAACCGATTTTTCACAGAATCCATGAAGAATGTGAATAATAATTCAAAAACCGGTCGAAGTTATTTTACTGCTGTAGCCCATTATTTTTTTCACATAAAAGTTGAACTTTTGCCTTTCCTATAGGTAAAATATGGCCCTAAACACATTTTTTGGAAAAAAAAACAAAATTGAAATTGCCCCAAAAAATTATTTGCGATGGGGGTAAATTTGTGTATTTACTCA</canonical>
            <polymorphic>CAAACGATGGTGATGGCATCGTCTGAAAGCTCTCGAACACAAAAAATATGATACGAAAAGTGTGTAAAAATTGATATATTTTTCGTGTATAAACATTCGAGATGATTCATCGAATGAAGAGAGAAAAAGAGCGATGATGACCCGGCGGGGCACGATTCAATCAACTAGAAACTTCTAGAAACTGTATAGTACTAAATTCTAGGGACCAAAAGATTTCAAATTTTGGACAGAAAATGAGCACAACTGCAAAATAAGCCTAATCCGTACCTCTCTAGGGGTGGTTCTCAAGCTAATTACACGAAAAAGCGGGAAAAGAGAGATACACACGACAGATGTCCTTCCTGTCCTCTCGCTCGCTTGGTGCTTATTAATTTTTTTGTCCGTGTCCGTTCGGTTTGGGACATTCAGTCACCATAATAACCTCCAGGCCATATGAGGAGAGATACCCTTTAATCATGGATAGGTTTGGGGGTCATGAGAGAGACAACATATAAGTTTTYAAAAGAGACATTTGAGTAGCCTAACTTTCAAGATTCCTAGGCCATCAAAAGTTTTAGGAAGGCATCCTGCAAAAGGATTCTAGACCATTGATAAGGCCTGGCCTAACTGTTAAGGTTTCTAGGCCAGTCTGACTTCCCAGAATGGATTTTTTCGGTCACCAGGAACATTTTTCAGGTGAAGAGACCAACATACTTGCAACGGGCCGGGTTTTTTTTCAGAATTTTCAGGGCCCGGCCCGGACCGCGGGCCAGGCCCTGATTTTGCAAGTATGGAGATCAACCGATTTTTCACAGAATCCATGAAGAATGTGAATAATAATTCAAAAACCGGTCGAAGTTATTTTACTGCTGTAGCCCATTATTTTTTTCACATAAAAGTTGAACTTTTGCCTTTCCTATAGGTAAAATATGGCCCTAAACACATTTTTTGGAAAAAAAAACAAAATTGAAATTGCCCCAAAAAATTATTTGCGATGGGGGTAAATTTGTGTATTTACTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>390 368 111 82 49</canonical_bands>
                <polymorphic_bands>390 368 160 82</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACCCTTTAATCATGGATAGGTT</pcr_primer_p1>
		<pcr_primer_p2>AGTATGTTGGTCTCTTCACCTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TACCCTTTAATCATGGATAGGTTTGGGGGTCATGAGAGAGACAACATATAAGTTTTTAAAAGAGACATTTGAGTAGCCTAACTTTCAAGATTCCTAGGCCATCAAAAGTTTTAGGAAGGCATCCTGCAAAAGGATTCTAGACCATTGATAAGGCCTGGCCTAACTGTTAAGGTTTCTAGGCCAGTCTGACTTCCCAGAATGGATTTTTTCGGTCACCAGGAACATTTTTCAGGTGAAGAGACCAACATACT</canonical_amplicon>
		<polymorphic_amplicon>TACCCTTTAATCATGGATAGGTTTGGGGGTCATGAGAGAGACAACATATAAGTTTTYAAAAGAGACATTTGAGTAGCCTAACTTTCAAGATTCCTAGGCCATCAAAAGTTTTAGGAAGGCATCCTGCAAAAGGATTCTAGACCATTGATAAGGCCTGGCCTAACTGTTAAGGTTTCTAGGCCAGTCTGACTTCCCAGAATGGATTTTTTCGGTCACCAGGAACATTTTTCAGGTGAAGAGACCAACATACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12240</snp_id>
        <super_contig>c006400955.Contig1</super_contig>
        <contig_pos>58911</contig_pos>
        <strand>+</strand>
        <context>CAACATATAA[A/G]TTTTYAAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCCTTTAATCATGGATAGGTTTGGGGGTCATGAGAGAGACAACATATAA</left_flank>
        <right_flank>TTTTTAAAAGAGACATTTGAGTAGCCTAACTTTCAAGATTCCTAGGCCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGGGCAAACGATGGTGATGGCATCGTCTGAAAGCTCTCGAACACAAAAAATATGATACGAAAAGTGTGTAAAAATTGATATATTTTTCGTGTATAAACATTCGAGATGATTCATCGAATGAAGAGAGAAAAAGAGCGATGATGACCCGGCGGGGCACGATTCAATCAACTAGAAACTTCTAGAAACTGTATAGTACTAAATTCTAGGGACCAAAAGATTTCAAATTTTGGACAGAAAATGAGCACAACTGCAAAATAAGCCTAATCCGTACCTCTCTAGGGGTGGTTCTCAAGCTAATTACACGAAAAAGCGGGAAAAGAGAGATACACACGACAGATGTCCTTCCTGTCCTCTCGCTCGCTTGGTGCTTATTAATTTTTTTGTCCGTGTCCGTTCGGTTTGGGACATTCAGTCACCATAATAACCTCCAGGCCATATGAGGAGAGATACCCTTTAATCATGGATAGGTTTGGGGGTCATGAGAGAGACAACATATAAGTTTTTAAAAGAGACATTTGAGTAGCCTAACTTTCAAGATTCCTAGGCCATCAAAAGTTTTAGGAAGGCATCCTGCAAAAGGATTCTAGACCATTGATAAGGCCTGGCCTAACTGTTAAGGTTTCTAGGCCAGTCTGACTTCCCAGAATGGATTTTTTCGGTCACCAGGAACATTTTTCAGGTGAAGAGACCAACATACTTGCAACGGGCCGGGTTTTTTTTCAGAATTTTCAGGGCCCGGCCCGGACCGCGGGCCAGGCCCTGATTTTGCAAGTATGGAGATCAACCGATTTTTCACAGAATCCATGAAGAATGTGAATAATAATTCAAAAACCGGTCGAAGTTATTTTACTGCTGTAGCCCATTATTTTTTTCACATAAAAGTTGAACTTTTGCCTTTCCTATAGGTAAAATATGGCCCTAAACACATTTTTTGGAAAAAAAAACAAAATTGAAATTGCCCCAAAAAATTATTTGCGATGGGGGTAAATTTGTGTATTT</canonical>
            <polymorphic>GGGGGCAAACGATGGTGATGGCATCGTCTGAAAGCTCTCGAACACAAAAAATATGATACGAAAAGTGTGTAAAAATTGATATATTTTTCGTGTATAAACATTCGAGATGATTCATCGAATGAAGAGAGAAAAAGAGCGATGATGACCCGGCGGGGCACGATTCAATCAACTAGAAACTTCTAGAAACTGTATAGTACTAAATTCTAGGGACCAAAAGATTTCAAATTTTGGACAGAAAATGAGCACAACTGCAAAATAAGCCTAATCCGTACCTCTCTAGGGGTGGTTCTCAAGCTAATTACACGAAAAAGCGGGAAAAGAGAGATACACACGACAGATGTCCTTCCTGTCCTCTCGCTCGCTTGGTGCTTATTAATTTTTTTGTCCGTGTCCGTTCGGTTTGGGACATTCAGTCACCATAATAACCTCCAGGCCATATGAGGAGAGATACCCTTTAATCATGGATAGGTTTGGGGGTCATGAGAGAGACAACATATAARTTTTTAAAAGAGACATTTGAGTAGCCTAACTTTCAAGATTCCTAGGCCATCAAAAGTTTTAGGAAGGCATCCTGCAAAAGGATTCTAGACCATTGATAAGGCCTGGCCTAACTGTTAAGGTTTCTAGGCCAGTCTGACTTCCCAGAATGGATTTTTTCGGTCACCAGGAACATTTTTCAGGTGAAGAGACCAACATACTTGCAACGGGCCGGGTTTTTTTTCAGAATTTTCAGGGCCCGGCCCGGACCGCGGGCCAGGCCCTGATTTTGCAAGTATGGAGATCAACCGATTTTTCACAGAATCCATGAAGAATGTGAATAATAATTCAAAAACCGGTCGAAGTTATTTTACTGCTGTAGCCCATTATTTTTTTCACATAAAAGTTGAACTTTTGCCTTTCCTATAGGTAAAATATGGCCCTAAACACATTTTTTGGAAAAAAAAACAAAATTGAAATTGCCCCAAAAAATTATTTGCGATGGGGGTAAATTTGTGTATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACCCTTTAATCATGGATAGGT</pcr_primer_p1>
		<pcr_primer_p2>AGTATGTTGGTCTCTTCACCTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATACCCTTTAATCATGGATAGGTTTGGGGGTCATGAGAGAGACAACATATAAGTTTTTAAAAGAGACATTTGAGTAGCCTAACTTTCAAGATTCCTAGGCCATCAAAAGTTTTAGGAAGGCATCCTGCAAAAGGATTCTAGACCATTGATAAGGCCTGGCCTAACTGTTAAGGTTTCTAGGCCAGTCTGACTTCCCAGAATGGATTTTTTCGGTCACCAGGAACATTTTTCAGGTGAAGAGACCAACATACT</canonical_amplicon>
		<polymorphic_amplicon>ATACCCTTTAATCATGGATAGGTTTGGGGGTCATGAGAGAGACAACATATAARTTTTTAAAAGAGACATTTGAGTAGCCTAACTTTCAAGATTCCTAGGCCATCAAAAGTTTTAGGAAGGCATCCTGCAAAAGGATTCTAGACCATTGATAAGGCCTGGCCTAACTGTTAAGGTTTCTAGGCCAGTCTGACTTCCCAGAATGGATTTTTTCGGTCACCAGGAACATTTTTCAGGTGAAGAGACCAACATACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12246</snp_id>
        <super_contig>c006400955.Contig1</super_contig>
        <contig_pos>60485</contig_pos>
        <strand></strand>
        <context>GGGACAAAAA[G/T]CATCTAGTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGATCAATTCGGAGAGCTCAAAACGGAAATTTCAGAAAGTGGGACAAAAA</left_flank>
        <right_flank>CATCTAGTTGGCTGATGAGGCGACATTTCAATAGAACGTGATGAGCTGGA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTTTCAAAATTCAAAAAAATCAGAAATTTAGGAAGAAATAGGCACAGTGGGTGGTTTCAAACAGAAAAATGAACACAAGGAATCTCGATTTGTCACCGAAAAAAGAAAAAAAACTGTTTTCCTTGTTTTCCGCCTCTCGAGAATCTCAAGAACATTCTCTCATTCGAATCACAAAATTCGCGGCGAAATCCTCAGCGAAAAGCAAGTGCGCCCTGCCTCGATACGATTGCCTGCGTCTCTTGGGCGCCACCCAGTCTCTCGTTCGACCTTGAGCGGCGACTCAAAAAATGATGGACAGCTGGGGAGGGACAAGTCGAGTGGTTCGTTTTCTAAGAAGTTGTTGAGAGGAATGGAAGAAAAAGAAAGAAAAAGATGAAAAAGGAGATAGTGACCGAGAAAATTAACTTTTGAATTAAAAAAATAACGCAGATTTTCTGGCAATTAAGGATCAATTCGGAGAGCTCAAAACGGAAATTTCAGAAAGTGGGACAAAAAGCATCTAGTTGGCTGATGAGGCGACATTTCAATAGAACGTGATGAGCTGGAAATTTTTTTTTCAAAAATTGCGCGTGGAATGTGGTGTATTAATTTTAGGTGTTGGGTGTGTTACCTGAGAACCTAGAATACACGGAAATTCAAAAAATCGGGGAAAACGATTAGCAAGAAATTAAATACAAATAGAAGTAAAAGTAAAACTTCAAAGTTTTCAATTTTTAAAGAACTTGGAAAATTTCATAAAGTTACCTACAGTGTAACTCTTACAGTAGTAACTACAGTACCTCTAGACCAAAATTTTTGGAAAATTTGATTTTTGTGGCCACGAAATCTTGAAAACCAACTTCTAGTCCACTATTCATCAACAATCATAAAACAGAAACAAACACTATTGTATATGTGTCTTGTGAGGAGTCATTATGGTGCTTGTACGTATTTAGGGATTACAAGCCACCCGAACGGAAAACGGAAAAAGAAAGGAGACTACTGTGAATAGAAAGG</canonical>
            <polymorphic>AAATTTTTCAAAATTCAAAAAAATCAGAAATTTAGGAAGAAATAGGCACAGTGGGTGGTTTCAAACAGAAAAATGAACACAAGGAATCTCGATTTGTCACCGAAAAAAGAAAAAAAACTGTTTTCCTTGTTTTCCGCCTCTCGAGAATCTCAAGAACATTCTCTCATTCGAATCACAAAATTCGCGGCGAAATCCTCAGCGAAAAGCAAGTGCGCCCTGCCTCGATACGATTGCCTGCGTCTCTTGGGCGCCACCCAGTCTCTCGTTCGACCTTGAGCGGCGACTCAAAAAATGATGGACAGCTGGGGAGGGACAAGTCGAGTGGTTCGTTTTCTAAGAAGTTGTTGAGAGGAATGGAAGAAAAAGAAAGAAAAAGATGAAAAAGGAGATAGTGACCGAGAAAATTAACTTTTGAATTAAAAAAATAACGCAGATTTTCTGGCAATTAAGGATCAATTCGGAGAGCTCAAAACGGAAATTTCAGAAAGTGGGACAAAAAKCATCTAGTTGGCTGATGAGGCGACATTTCAATAGAACGTGATGAGCTGGAAATTTTTTTTTCAAAAATTGCGCGTGGAATGTGGTGTATTAATTTTAGGTGTTGGGTGTGTTACCTGAGAACCTAGAATACACGGAAATTCAAAAAATCGGGGAAAACGATTAGCAAGAAATTAAATACAAATAGAAGTAAAAGTAAAACTTCAAAGTTTTCAATTTTTAAAGAACTTGGAAAATTTCATAAAGTTACCTACAGTGTAACTCTTACAGTAGTAACTACAGTACCTCTAGACCAAAATTTTTGGAAAATTTGATTTTTGTGGCCACGAAATCTTGAAAACCAACTTCTAGTCCACTATTCATCAACAATCATAAAACAGAAACAAACACTATTGTATATGTGTCTTGTGAGGAGTCATTATGGTGCTTGTACGTATTTAGGGATTACAAGCCACCCGAACGGAAAACGGAAAAAGAAAGGAGACTACTGTGAATAGAAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGGAAGAAAAAGAAAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAATTAATACACCACATTCCAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AATGGAAGAAAAAGAAAGAAAAAGATGAAAAAGGAGATAGTGACCGAGAAAATTAACTTTTGAATTAAAAAAATAACGCAGATTTTCTGGCAATTAAGGATCAATTCGGAGAGCTCAAAACGGAAATTTCAGAAAGTGGGACAAAAAGCATCTAGTTGGCTGATGAGGCGACATTTCAATAGAACGTGATGAGCTGGAAATTTTTTTTTCAAAAATTGCGCGTGGAATGTGGTGTATTAATTTT</canonical_amplicon>
		<polymorphic_amplicon>AATGGAAGAAAAAGAAAGAAAAAGATGAAAAAGGAGATAGTGACCGAGAAAATTAACTTTTGAATTAAAAAAATAACGCAGATTTTCTGGCAATTAAGGATCAATTCGGAGAGCTCAAAACGGAAATTTCAGAAAGTGGGACAAAAAKCATCTAGTTGGCTGATGAGGCGACATTTCAATAGAACGTGATGAGCTGGAAATTTTTTTTTCAAAAATTGCGCGTGGAATGTGGTGTATTAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12247</snp_id>
        <super_contig>c006400955.Contig1</super_contig>
        <contig_pos>60394</contig_pos>
        <strand></strand>
        <context>AGAAAATTAA[C/T]TTTTGAATTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAAAAGAAAGAAAAAGATGAAAAAGGAGATAGTGACCGAGAAAATTAA</left_flank>
        <right_flank>TTTTGAATTAAAAAAATAACGCAGATTTTCTGGCAATTAAGGATCAATTC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGCCGAAATAGTGAAAGGAAATAGATTTTCGCCGAAAAAAAATAAATTTTGAAAGCTTCGTTTGAGAAAAAGTTTCCTTTTTGAAGTCAAAATTTTTCAAAATTCAAAAAAATCAGAAATTTAGGAAGAAATAGGCACAGTGGGTGGTTTCAAACAGAAAAATGAACACAAGGAATCTCGATTTGTCACCGAAAAAAGAAAAAAAACTGTTTTCCTTGTTTTCCGCCTCTCGAGAATCTCAAGAACATTCTCTCATTCGAATCACAAAATTCGCGGCGAAATCCTCAGCGAAAAGCAAGTGCGCCCTGCCTCGATACGATTGCCTGCGTCTCTTGGGCGCCACCCAGTCTCTCGTTCGACCTTGAGCGGCGACTCAAAAAATGATGGACAGCTGGGGAGGGACAAGTCGAGTGGTTCGTTTTCTAAGAAGTTGTTGAGAGGAATGGAAGAAAAAGAAAGAAAAAGATGAAAAAGGAGATAGTGACCGAGAAAATTAACTTTTGAATTAAAAAAATAACGCAGATTTTCTGGCAATTAAGGATCAATTCGGAGAGCTCAAAACGGAAATTTCAGAAAGTGGGACAAAAAGCATCTAGTTGGCTGATGAGGCGACATTTCAATAGAACGTGATGAGCTGGAAATTTTTTTTTCAAAAATTGCGCGTGGAATGTGGTGTATTAATTTTAGGTGTTGGGTGTGTTACCTGAGAACCTAGAATACACGGAAATTCAAAAAATCGGGGAAAACGATTAGCAAGAAATTAAATACAAATAGAAGTAAAAGTAAAACTTCAAAGTTTTCAATTTTTAAAGAACTTGGAAAATTTCATAAAGTTACCTACAGTGTAACTCTTACAGTAGTAACTACAGTACCTCTAGACCAAAATTTTTGGAAAATTTGATTTTTGTGGCCACGAAATCTTGAAAACCAACTTCTAGTCCACTATTCATCAACAATCATAAAACAGAAACAAACACTATTGTATATGTGTCTTGTGA</canonical>
            <polymorphic>TCAGCCGAAATAGTGAAAGGAAATAGATTTTCGCCGAAAAAAAATAAATTTTGAAAGCTTCGTTTGAGAAAAAGTTTCCTTTTTGAAGTCAAAATTTTTCAAAATTCAAAAAAATCAGAAATTTAGGAAGAAATAGGCACAGTGGGTGGTTTCAAACAGAAAAATGAACACAAGGAATCTCGATTTGTCACCGAAAAAAGAAAAAAAACTGTTTTCCTTGTTTTCCGCCTCTCGAGAATCTCAAGAACATTCTCTCATTCGAATCACAAAATTCGCGGCGAAATCCTCAGCGAAAAGCAAGTGCGCCCTGCCTCGATACGATTGCCTGCGTCTCTTGGGCGCCACCCAGTCTCTCGTTCGACCTTGAGCGGCGACTCAAAAAATGATGGACAGCTGGGGAGGGACAAGTCGAGTGGTTCGTTTTCTAAGAAGTTGTTGAGAGGAATGGAAGAAAAAGAAAGAAAAAGATGAAAAAGGAGATAGTGACCGAGAAAATTAAYTTTTGAATTAAAAAAATAACGCAGATTTTCTGGCAATTAAGGATCAATTCGGAGAGCTCAAAACGGAAATTTCAGAAAGTGGGACAAAAAGCATCTAGTTGGCTGATGAGGCGACATTTCAATAGAACGTGATGAGCTGGAAATTTTTTTTTCAAAAATTGCGCGTGGAATGTGGTGTATTAATTTTAGGTGTTGGGTGTGTTACCTGAGAACCTAGAATACACGGAAATTCAAAAAATCGGGGAAAACGATTAGCAAGAAATTAAATACAAATAGAAGTAAAAGTAAAACTTCAAAGTTTTCAATTTTTAAAGAACTTGGAAAATTTCATAAAGTTACCTACAGTGTAACTCTTACAGTAGTAACTACAGTACCTCTAGACCAAAATTTTTGGAAAATTTGATTTTTGTGGCCACGAAATCTTGAAAACCAACTTCTAGTCCACTATTCATCAACAATCATAAAACAGAAACAAACACTATTGTATATGTGTCTTGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGGAAGAAAAAGAAAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAATTAATACACCACATTCCAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AATGGAAGAAAAAGAAAGAAAAAGATGAAAAAGGAGATAGTGACCGAGAAAATTAACTTTTGAATTAAAAAAATAACGCAGATTTTCTGGCAATTAAGGATCAATTCGGAGAGCTCAAAACGGAAATTTCAGAAAGTGGGACAAAAAGCATCTAGTTGGCTGATGAGGCGACATTTCAATAGAACGTGATGAGCTGGAAATTTTTTTTTCAAAAATTGCGCGTGGAATGTGGTGTATTAATTTT</canonical_amplicon>
		<polymorphic_amplicon>AATGGAAGAAAAAGAAAGAAAAAGATGAAAAAGGAGATAGTGACCGAGAAAATTAAYTTTTGAATTAAAAAAATAACGCAGATTTTCTGGCAATTAAGGATCAATTCGGAGAGCTCAAAACGGAAATTTCAGAAAGTGGGACAAAAAGCATCTAGTTGGCTGATGAGGCGACATTTCAATAGAACGTGATGAGCTGGAAATTTTTTTTTCAAAAATTGCGCGTGGAATGTGGTGTATTAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12248</snp_id>
        <super_contig>c006400955.Contig1</super_contig>
        <contig_pos>60361</contig_pos>
        <strand></strand>
        <context>GAAAGAAAAA[G/T]ATGAAAAAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCGTTTTCTAAGAAGTTGTTGAGAGGAATGGAAGAAAAAGAAAGAAAAA</left_flank>
        <right_flank>ATGAAAAAGGAGATAGTGACCGAGAAAATTAACTTTTGAATTAAAAAAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTACAGGTTTTACTGTATTTTCGAACGAGATCAGCCGAAATAGTGAAAGGAAATAGATTTTCGCCGAAAAAAAATAAATTTTGAAAGCTTCGTTTGAGAAAAAGTTTCCTTTTTGAAGTCAAAATTTTTCAAAATTCAAAAAAATCAGAAATTTAGGAAGAAATAGGCACAGTGGGTGGTTTCAAACAGAAAAATGAACACAAGGAATCTCGATTTGTCACCGAAAAAAGAAAAAAAACTGTTTTCCTTGTTTTCCGCCTCTCGAGAATCTCAAGAACATTCTCTCATTCGAATCACAAAATTCGCGGCGAAATCCTCAGCGAAAAGCAAGTGCGCCCTGCCTCGATACGATTGCCTGCGTCTCTTGGGCGCCACCCAGTCTCTCGTTCGACCTTGAGCGGCGACTCAAAAAATGATGGACAGCTGGGGAGGGACAAGTCGAGTGGTTCGTTTTCTAAGAAGTTGTTGAGAGGAATGGAAGAAAAAGAAAGAAAAAGATGAAAAAGGAGATAGTGACCGAGAAAATTAACTTTTGAATTAAAAAAATAACGCAGATTTTCTGGCAATTAAGGATCAATTCGGAGAGCTCAAAACGGAAATTTCAGAAAGTGGGACAAAAAGCATCTAGTTGGCTGATGAGGCGACATTTCAATAGAACGTGATGAGCTGGAAATTTTTTTTTCAAAAATTGCGCGTGGAATGTGGTGTATTAATTTTAGGTGTTGGGTGTGTTACCTGAGAACCTAGAATACACGGAAATTCAAAAAATCGGGGAAAACGATTAGCAAGAAATTAAATACAAATAGAAGTAAAAGTAAAACTTCAAAGTTTTCAATTTTTAAAGAACTTGGAAAATTTCATAAAGTTACCTACAGTGTAACTCTTACAGTAGTAACTACAGTACCTCTAGACCAAAATTTTTGGAAAATTTGATTTTTGTGGCCACGAAATCTTGAAAACCAACTTCTAGTCCACTATTCATCAACAATCATAAAAC</canonical>
            <polymorphic>CTTTTACAGGTTTTACTGTATTTTCGAACGAGATCAGCCGAAATAGTGAAAGGAAATAGATTTTCGCCGAAAAAAAATAAATTTTGAAAGCTTCGTTTGAGAAAAAGTTTCCTTTTTGAAGTCAAAATTTTTCAAAATTCAAAAAAATCAGAAATTTAGGAAGAAATAGGCACAGTGGGTGGTTTCAAACAGAAAAATGAACACAAGGAATCTCGATTTGTCACCGAAAAAAGAAAAAAAACTGTTTTCCTTGTTTTCCGCCTCTCGAGAATCTCAAGAACATTCTCTCATTCGAATCACAAAATTCGCGGCGAAATCCTCAGCGAAAAGCAAGTGCGCCCTGCCTCGATACGATTGCCTGCGTCTCTTGGGCGCCACCCAGTCTCTCGTTCGACCTTGAGCGGCGACTCAAAAAATGATGGACAGCTGGGGAGGGACAAGTCGAGTGGTTCGTTTTCTAAGAAGTTGTTGAGAGGAATGGAAGAAAAAGAAAGAAAAAKATGAAAAAGGAGATAGTGACCGAGAAAATTAACTTTTGAATTAAAAAAATAACGCAGATTTTCTGGCAATTAAGGATCAATTCGGAGAGCTCAAAACGGAAATTTCAGAAAGTGGGACAAAAAGCATCTAGTTGGCTGATGAGGCGACATTTCAATAGAACGTGATGAGCTGGAAATTTTTTTTTCAAAAATTGCGCGTGGAATGTGGTGTATTAATTTTAGGTGTTGGGTGTGTTACCTGAGAACCTAGAATACACGGAAATTCAAAAAATCGGGGAAAACGATTAGCAAGAAATTAAATACAAATAGAAGTAAAAGTAAAACTTCAAAGTTTTCAATTTTTAAAGAACTTGGAAAATTTCATAAAGTTACCTACAGTGTAACTCTTACAGTAGTAACTACAGTACCTCTAGACCAAAATTTTTGGAAAATTTGATTTTTGTGGCCACGAAATCTTGAAAACCAACTTCTAGTCCACTATTCATCAACAATCATAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGGTTCGTTTTCTAAGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTTCCAGCTCATCAC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>AGTGGTTCGTTTTCTAAGAAGTTGTTGAGAGGAATGGAAGAAAAAGAAAGAAAAAGATGAAAAAGGAGATAGTGACCGAGAAAATTAACTTTTGAATTAAAAAAATAACGCAGATTTTCTGGCAATTAAGGATCAATTCGGAGAGCTCAAAACGGAAATTTCAGAAAGTGGGACAAAAAGCATCTAGTTGGCTGATGAGGCGACATTTCAATAGAACGTGATGAGCTGGAAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>AGTGGTTCGTTTTCTAAGAAGTTGTTGAGAGGAATGGAAGAAAAAGAAAGAAAAAKATGAAAAAGGAGATAGTGACCGAGAAAATTAACTTTTGAATTAAAAAAATAACGCAGATTTTCTGGCAATTAAGGATCAATTCGGAGAGCTCAAAACGGAAATTTCAGAAAGTGGGACAAAAAGCATCTAGTTGGCTGATGAGGCGACATTTCAATAGAACGTGATGAGCTGGAAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12249</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>20718</contig_pos>
        <strand>+</strand>
        <context>CATCCAACAC[A/G]AAAGTTACGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTACAAGAATTTGTTCAGAAGCTGAAATATGTAAAACTTACATCCAACAC</left_flank>
        <right_flank>AAAGTTACGGCACTCTCCTTCACTCTTGAAGTTGTTTTTATTACCACCAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAAGTACAAGCTAGGAAAGAATGACAATAAAGCAGTCCTCAAAAAGTTTATTAGTATAGTTTCATTAAAAAAAGCCTCTATTTACAACATGTGGCGAAATAAGTTCCCTCGACACACTTGGCGCCAGCTGGACAGAATTTCGACTTGCAAGTCTTTCCAACGACAGTTATTGGGATTCCACCACGGTTCTCTTCGTGCACTTTCGTTCCCTTTGGACACTTTGGATTCCAATCCGCTTCGAAATCTTTTGTGATCTTCTTATCACAGCAATGGTTGATCAGACCCCCGTTGATACATGTTGCATTTGGTACACAATCTTTCCGAAAATATGAAAAATATGAGAGATATGATTTTAGATTTTACATCAGTAGAACATGGGCCAATGAAACCTTTGACAGTATTCAATTCCTTGCTTCCAGCAGCACATACTACGTAGTCATCTGAAAATTACAAGAATTTGTTCAGAAGCTGAAATATGTAAAACTTACATCCAACACGAAAGTTACGGCACTCTCCTTCACTCTTGAAGTTGTTTTTATTACCACCACATCCAGTATATTCGAAGGCAAGTGGAATAAAAGCTTTGATGTCGAAGTAGTACTGTAACTCTGGATTTAACATGTGAACTCAAATTCCTCAAGAGAATCAAACTCACTCTAATTTCCGGCTTTCCAGTTTTACATGGGCTCTTTCCCATGTCTAATTTCAGCGTGCATTCTTCTGGAATACCATAGACGAATGGATGGAAACCTTGCCGAGAAGAAAATGAGTGAATATATACTGATTGATGTGAGTTTAGATGGTCGAGTATGACACTTTTATAGGTTTTGATGAGATGTGATAGGCACGTTGACATTTTAATTTTAATTTTTTAAATTTAATTTATTGACCAGGTGAATGCAACAAAGGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAGCGGGATAATTAGATATTTGACA</canonical>
            <polymorphic>GGAAAGTACAAGCTAGGAAAGAATGACAATAAAGCAGTCCTCAAAAAGTTTATTAGTATAGTTTCATTAAAAAAAGCCTCTATTTACAACATGTGGCGAAATAAGTTCCCTCGACACACTTGGCGCCAGCTGGACAGAATTTCGACTTGCAAGTCTTTCCAACGACAGTTATTGGGATTCCACCACGGTTCTCTTCGTGCACTTTCGTTCCCTTTGGACACTTTGGATTCCAATCCGCTTCGAAATCTTTTGTGATCTTCTTATCACAGCAATGGTTGATCAGACCCCCGTTGATACATGTTGCATTTGGTACACAATCTTTCCGAAAATATGAAAAATATGAGAGATATGATTTTAGATTTTACATCAGTAGAACATGGGCCAATGAAACCTTTGACAGTATTCAATTCCTTGCTTCCAGCAGCACATACTACGTAGTCATCTGAAAATTACAAGAATTTGTTCAGAAGCTGAAATATGTAAAACTTACATCCAACACRAAAGTTACGGCACTCTCCTTCACTCTTGAAGTTGTTTTTATTACCACCACATCCAGTATATTCGAAGGCAAGTGGAATAAAAGCTTTGATGTCGAAGTAGTACTGTAACTCTGGATTTAACATGTGAACTCAAATTCCTCAAGAGAATCAAACTCACTCTAATTTCCGGCTTTCCAGTTTTACATGGGCTCTTTCCCATGTCTAATTTCAGCGTGCATTCTTCTGGAATACCATAGACGAATGGATGGAAACCTTGCCGAGAAGAAAATGAGTGAATATATACTGATTGATGTGAGTTTAGATGGTCGAGTATGACACTTTTATAGGTTTTGATGAGATGTGATAGGCACGTTGACATTTTAATTTTAATTTTTTAAATTTAATTTATTGACCAGGTGAATGCAACAAAGGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAGCGGGATAATTAGATATTTGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTCCGAAAATATGAAAAATA</pcr_primer_p1>
		<pcr_primer_p2>GAATATACTGGATGTGGTGGTAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCTTTCCGAAAATATGAAAAATATGAGAGATATGATTTTAGATTTTACATCAGTAGAACATGGGCCAATGAAACCTTTGACAGTATTCAATTCCTTGCTTCCAGCAGCACATACTACGTAGTCATCTGAAAATTACAAGAATTTGTTCAGAAGCTGAAATATGTAAAACTTACATCCAACACGAAAGTTACGGCACTCTCCTTCACTCTTGAAGTTGTTTTTATTACCACCACATCCAGTATATTC</canonical_amplicon>
		<polymorphic_amplicon>TCTTTCCGAAAATATGAAAAATATGAGAGATATGATTTTAGATTTTACATCAGTAGAACATGGGCCAATGAAACCTTTGACAGTATTCAATTCCTTGCTTCCAGCAGCACATACTACGTAGTCATCTGAAAATTACAAGAATTTGTTCAGAAGCTGAAATATGTAAAACTTACATCCAACACRAAAGTTACGGCACTCTCCTTCACTCTTGAAGTTGTTTTTATTACCACCACATCCAGTATATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12250</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>20648</contig_pos>
        <strand>+</strand>
        <context>AGCAGCACAT[A/C]CTACGTAGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGCCAATGAAACCTTTGACAGTATTCAATTCCTTGCTTCCAGCAGCACAT</left_flank>
        <right_flank>CTACGTAGTCATCTGAAAATTACAAGAATTTGTTCAGAAGCTGAAATATG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGACGGTACCAAGTGTAAGGGGAAGAGAGTTCGACCAAGGAATACCCCGTCAGAAAAAGTGCTCATCAGAGGAAAGTACAAGCTAGGAAAGAATGACAATAAAGCAGTCCTCAAAAAGTTTATTAGTATAGTTTCATTAAAAAAAGCCTCTATTTACAACATGTGGCGAAATAAGTTCCCTCGACACACTTGGCGCCAGCTGGACAGAATTTCGACTTGCAAGTCTTTCCAACGACAGTTATTGGGATTCCACCACGGTTCTCTTCGTGCACTTTCGTTCCCTTTGGACACTTTGGATTCCAATCCGCTTCGAAATCTTTTGTGATCTTCTTATCACAGCAATGGTTGATCAGACCCCCGTTGATACATGTTGCATTTGGTACACAATCTTTCCGAAAATATGAAAAATATGAGAGATATGATTTTAGATTTTACATCAGTAGAACATGGGCCAATGAAACCTTTGACAGTATTCAATTCCTTGCTTCCAGCAGCACATACTACGTAGTCATCTGAAAATTACAAGAATTTGTTCAGAAGCTGAAATATGTAAAACTTACATCCAACACGAAAGTTACGGCACTCTCCTTCACTCTTGAAGTTGTTTTTATTACCACCACATCCAGTATATTCGAAGGCAAGTGGAATAAAAGCTTTGATGTCGAAGTAGTACTGTAACTCTGGATTTAACATGTGAACTCAAATTCCTCAAGAGAATCAAACTCACTCTAATTTCCGGCTTTCCAGTTTTACATGGGCTCTTTCCCATGTCTAATTTCAGCGTGCATTCTTCTGGAATACCATAGACGAATGGATGGAAACCTTGCCGAGAAGAAAATGAGTGAATATATACTGATTGATGTGAGTTTAGATGGTCGAGTATGACACTTTTATAGGTTTTGATGAGATGTGATAGGCACGTTGACATTTTAATTTTAATTTTTTAAATTTAATTTATTGACCAGGTGAATGCAACAAAGGAGGGCAGGACATGAAAGAC</canonical>
            <polymorphic>GGACGGTACCAAGTGTAAGGGGAAGAGAGTTCGACCAAGGAATACCCCGTCAGAAAAAGTGCTCATCAGAGGAAAGTACAAGCTAGGAAAGAATGACAATAAAGCAGTCCTCAAAAAGTTTATTAGTATAGTTTCATTAAAAAAAGCCTCTATTTACAACATGTGGCGAAATAAGTTCCCTCGACACACTTGGCGCCAGCTGGACAGAATTTCGACTTGCAAGTCTTTCCAACGACAGTTATTGGGATTCCACCACGGTTCTCTTCGTGCACTTTCGTTCCCTTTGGACACTTTGGATTCCAATCCGCTTCGAAATCTTTTGTGATCTTCTTATCACAGCAATGGTTGATCAGACCCCCGTTGATACATGTTGCATTTGGTACACAATCTTTCCGAAAATATGAAAAATATGAGAGATATGATTTTAGATTTTACATCAGTAGAACATGGGCCAATGAAACCTTTGACAGTATTCAATTCCTTGCTTCCAGCAGCACATMCTACGTAGTCATCTGAAAATTACAAGAATTTGTTCAGAAGCTGAAATATGTAAAACTTACATCCAACACGAAAGTTACGGCACTCTCCTTCACTCTTGAAGTTGTTTTTATTACCACCACATCCAGTATATTCGAAGGCAAGTGGAATAAAAGCTTTGATGTCGAAGTAGTACTGTAACTCTGGATTTAACATGTGAACTCAAATTCCTCAAGAGAATCAAACTCACTCTAATTTCCGGCTTTCCAGTTTTACATGGGCTCTTTCCCATGTCTAATTTCAGCGTGCATTCTTCTGGAATACCATAGACGAATGGATGGAAACCTTGCCGAGAAGAAAATGAGTGAATATATACTGATTGATGTGAGTTTAGATGGTCGAGTATGACACTTTTATAGGTTTTGATGAGATGTGATAGGCACGTTGACATTTTAATTTTAATTTTTTAAATTTAATTTATTGACCAGGTGAATGCAACAAAGGAGGGCAGGACATGAAAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTCCGAAAATATGAAAAATA</pcr_primer_p1>
		<pcr_primer_p2>GAATATACTGGATGTGGTGGTAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCTTTCCGAAAATATGAAAAATATGAGAGATATGATTTTAGATTTTACATCAGTAGAACATGGGCCAATGAAACCTTTGACAGTATTCAATTCCTTGCTTCCAGCAGCACATACTACGTAGTCATCTGAAAATTACAAGAATTTGTTCAGAAGCTGAAATATGTAAAACTTACATCCAACACGAAAGTTACGGCACTCTCCTTCACTCTTGAAGTTGTTTTTATTACCACCACATCCAGTATATTC</canonical_amplicon>
		<polymorphic_amplicon>TCTTTCCGAAAATATGAAAAATATGAGAGATATGATTTTAGATTTTACATCAGTAGAACATGGGCCAATGAAACCTTTGACAGTATTCAATTCCTTGCTTCCAGCAGCACATMCTACGTAGTCATCTGAAAATTACAAGAATTTGTTCAGAAGCTGAAATATGTAAAACTTACATCCAACACGAAAGTTACGGCACTCTCCTTCACTCTTGAAGTTGTTTTTATTACCACCACATCCAGTATATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12251</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>52967</contig_pos>
        <strand>+</strand>
        <context>GGAAAAACCT[G/T]CGATTCCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATCCAGTATGCCTATAAAAGTTCCACTAGGCTTTTGATTGGAAAAACCT</left_flank>
        <right_flank>CGATTCCAAAATGTGTCCGACGAATTCCACATGTCATCAGTCGAAATATT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCTTGTTATGAAATCCAACAGCTCAGACGACAGAATCAAACCAAAACTAAAGTTTCATTTTGACAGAACGACTGGATTTTGCATGAGTTTTCTAGAATTTAGAAAACAAGATAATAGTTTTGATAACATTGCCGCATGTACATCTACTTGTTTAAGAAGTAAGCTATTCATAAACTTCCGAAAATTCAAGTATTTGGATTTCCAGACAACTATAAAGGTTGCCCATTCCAACGAAATCCAATAATCCCGATTCATTGTCACAGCAACAAAGATTGTAACCAACAGAAAACCAGAAAAAGCTCGAAAACGTTATATTGTACAAGAGAAGGTACCTGTTGTGACACGAAAGACTTGAGTAAGCTCCTTTGGTCTTGTAGAAGATCTAGTTTTTGTTTTCAGAAGAGTTGAGGACTGAATTCAATGTGACCTGTCCATGGGGTGGGCAAAAAATCCAGTATGCCTATAAAAGTTCCACTAGGCTTTTGATTGGAAAAACCTTCGATTCCAAAATGTGTCCGACGAATTCCACATGTCATCAGTCGAAATATTTTGCATACTGTTGTCAAAATCATAATTTATGAGTTTAAAAACGCATAAAAGTTATTCAAAATACATTAAGTCAATATCAATGAAAATAATACTTGAAATGGCAGGGGGATGGGGTATGTCAAAAATTAAAATGTCTGCAAAATGGAAACAAAACGGTTTTAACACTACAAGGGGAATCACAAATTTTGGATGTACGAAAAGTCACATTGGGGTGCAAATCCATAGGGGGATGGATAGTAAGGAGGGATGTCGAAAGTGTTCGGGATGGATGGTGGGACAGGGCTATCAAGTTCGAGTGGCGTTGGTTTCGATTCGCATCCAGATGAGCCATCATCGCTGTCGTTGGATCGGGCAGAGCTTCTGGAAATTACTTTGGTGATTGAAATGGTAAATCCCGGAAACATTTTGATATAATATATCTTTTACAAGAAGTGAGCTATGGGATCAAAG</canonical>
            <polymorphic>CGCTTGTTATGAAATCCAACAGCTCAGACGACAGAATCAAACCAAAACTAAAGTTTCATTTTGACAGAACGACTGGATTTTGCATGAGTTTTCTAGAATTTAGAAAACAAGATAATAGTTTTGATAACATTGCCGCATGTACATCTACTTGTTTAAGAAGTAAGCTATTCATAAACTTCCGAAAATTCAAGTATTTGGATTTCCAGACAACTATAAAGGTTGCCCATTCCAACGAAATCCAATAATCCCGATTCATTGTCACAGCAACAAAGATTGTAACCAACAGAAAACCAGAAAAAGCTCGAAAACGTTATATTGTACAAGAGAAGGTACCTGTTGTGACACGAAAGACTTGAGTAAGCTCCTTTGGTCTTGTAGAAGATCTAGTTTTTGTTTTCAGAAGAGTTGAGGACTGAATTCAATGTGACCTGTCCATGGGGTGGGCAAAAAATCCAGTATGCCTATAAAAGTTCCACTAGGCTTTTGATTGGAAAAACCTKCGATTCCAAAATGTGTCCGACGAATTCCACATGTCATCAGTCGAAATATTTTGCATACTGTTGTCAAAATCATAATTTATGAGTTTAAAAACGCATAAAAGTTATTCAAAATACATTAAGTCAATATCAATGAAAATAATACTTGAAATGGCAGGGGGATGGGGTATGTCAAAAATTAAAATGTCTGCAAAATGGAAACAAAACGGTTTTAACACTACAAGGGGAATCACAAATTTTGGATGTACGAAAAGTCACATTGGGGTGCAAATCCATAGGGGGATGGATAGTAAGGAGGGATGTCGAAAGTGTTCGGGATGGATGGTGGGACAGGGCTATCAAGTTCGAGTGGCGTTGGTTTCGATTCGCATCCAGATGAGCCATCATCGCTGTCGTTGGATCGGGCAGAGCTTCTGGAAATTACTTTGGTGATTGAAATGGTAAATCCCGGAAACATTTTGATATAATATATCTTTTACAAGAAGTGAGCTATGGGATCAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>303 259 198 141 42 41 16</canonical_bands>
                <polymorphic_bands>303 259 239 141 42 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCCAGTATGCCTATAAAAG</pcr_primer_p1>
		<pcr_primer_p2>GCAGACATTTTAATTTTTGACAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCCAGTATGCCTATAAAAGTTCCACTAGGCTTTTGATTGGAAAAACCTTCGATTCCAAAATGTGTCCGACGAATTCCACATGTCATCAGTCGAAATATTTTGCATACTGTTGTCAAAATCATAATTTATGAGTTTAAAAACGCATAAAAGTTATTCAAAATACATTAAGTCAATATCAATGAAAATAATACTTGAAATGGCAGGGGGATGGGGTATGTCAAAAATTAAAATGTCTGC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCCAGTATGCCTATAAAAGTTCCACTAGGCTTTTGATTGGAAAAACCTKCGATTCCAAAATGTGTCCGACGAATTCCACATGTCATCAGTCGAAATATTTTGCATACTGTTGTCAAAATCATAATTTATGAGTTTAAAAACGCATAAAAGTTATTCAAAATACATTAAGTCAATATCAATGAAAATAATACTTGAAATGGCAGGGGGATGGGGTATGTCAAAAATTAAAATGTCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12252</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>53903</contig_pos>
        <strand>+</strand>
        <context>CATCTTTGCA[A/C]TTTTTTTTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CACTAATAACAGTGGGGAGCCCCCACTTCTGATGATGCTTCATCTTTGCA</left_flank>
        <right_flank>TTTTTTTTGAATTATAATTTAGAAATCCAAACGGACTGGGTACCGTATTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTAAATCCCGGAAACATTTTGATATAATATATCTTTTACAAGAAGTGAGCTATGGGATCAAAGTTTATGGTTTGGTAGGCACTCTATTAGAGTACGGTATGCGCAATATGGCCGAAATCTCGTTCGTTCGAATTCTTGTATAATTGACTCACAATTGGATCAAAATTGAAAGTAATGGGCTCTTTTTTTATAGGTGTTACGGTAATATTGAATTTTAAAATGCTGGTCAGTTAGGAAAAATGCTGAATCTACCAATCATACCTTTCTTCCCTACCCAACACCTTTCTTCCTAACGCTTGCTTTCGTATTGTTTGAGAAGCTCTTGTATATGTTCTGACAAGGATCTTCCTCCCCGGCGGCGGCACCTACACGAACAATGCGTATTGTTCGGGTAGCAGCCGAAGTGACGATCGTGTCAACGACTCTATTACTTCAAAGTTTGGGCAAACACTAATAACAGTGGGGAGCCCCCACTTCTGATGATGCTTCATCTTTGCACTTTTTTTTGAATTATAATTTAGAAATCCAAACGGACTGGGTACCGTATTCTTCTACACTAATCGTCAAACTTCTAATGACATCATAATCTGTCGCTCTGATTATGGCTTTCATGATGTCCCTTAACCATTCGCAATCTATCCGTTTATCCAAGTAATATGTCCGATTGCGCAATCAAATGCACATACACACATGCGTGCGCGTCTCTACACAAGTTGACCTTTCAACTCTCTCGGACCATACTCACCTATCCAACTGGCCAGCTGCTCGCTCACGCTGTCTCTTGTTTTTGAACCAATTGGACACCTGCAAAAGTTGACTTTTTGGATCAGTCTTAATGAGATAATCAGGAAGTAATAACTTACTTGAATAACAGAAAGATCCGTTTGATTGGCCAACCTCTTCTTCTCATCCACCGATGGATAGTTATTTTTCTTGTAGGCGTCACGAAGCACATTTCTTGATTTCGATTTAAAACAGTAATTGGTTTCCTCTCCGTCC</canonical>
            <polymorphic>GGTAAATCCCGGAAACATTTTGATATAATATATCTTTTACAAGAAGTGAGCTATGGGATCAAAGTTTATGGTTTGGTAGGCACTCTATTAGAGTACGGTATGCGCAATATGGCCGAAATCTCGTTCGTTCGAATTCTTGTATAATTGACTCACAATTGGATCAAAATTGAAAGTAATGGGCTCTTTTTTTATAGGTGTTACGGTAATATTGAATTTTAAAATGCTGGTCAGTTAGGAAAAATGCTGAATCTACCAATCATACCTTTCTTCCCTACCCAACACCTTTCTTCCTAACGCTTGCTTTCGTATTGTTTGAGAAGCTCTTGTATATGTTCTGACAAGGATCTTCCTCCCCGGCGGCGGCACCTACACGAACAATGCGTATTGTTCGGGTAGCAGCCGAAGTGACGATCGTGTCAACGACTCTATTACTTCAAAGTTTGGGCAAACACTAATAACAGTGGGGAGCCCCCACTTCTGATGATGCTTCATCTTTGCAMTTTTTTTTGAATTATAATTTAGAAATCCAAACGGACTGGGTACCGTATTCTTCTACACTAATCGTCAAACTTCTAATGACATCATAATCTGTCGCTCTGATTATGGCTTTCATGATGTCCCTTAACCATTCGCAATCTATCCGTTTATCCAAGTAATATGTCCGATTGCGCAATCAAATGCACATACACACATGCGTGCGCGTCTCTACACAAGTTGACCTTTCAACTCTCTCGGACCATACTCACCTATCCAACTGGCCAGCTGCTCGCTCACGCTGTCTCTTGTTTTTGAACCAATTGGACACCTGCAAAAGTTGACTTTTTGGATCAGTCTTAATGAGATAATCAGGAAGTAATAACTTACTTGAATAACAGAAAGATCCGTTTGATTGGCCAACCTCTTCTTCTCATCCACCGATGGATAGTTATTTTTCTTGTAGGCGTCACGAAGCACATTTCTTGATTTCGATTTAAAACAGTAATTGGTTTCCTCTCCGTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>125 110 84 84 70 58 48 47 45 36 35 35 34 32 31 28 25 12 12 11 9 8 7 6 6 2</canonical_bands>
                <polymorphic_bands>125 110 84 84 83 70 48 47 45 36 35 35 34 32 31 28 12 12 11 9 8 7 6 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCGTGTCAACGACTCTATTAC</pcr_primer_p1>
		<pcr_primer_p2>TACTTGGATAAACGGATAGATTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GATCGTGTCAACGACTCTATTACTTCAAAGTTTGGGCAAACACTAATAACAGTGGGGAGCCCCCACTTCTGATGATGCTTCATCTTTGCACTTTTTTTTGAATTATAATTTAGAAATCCAAACGGACTGGGTACCGTATTCTTCTACACTAATCGTCAAACTTCTAATGACATCATAATCTGTCGCTCTGATTATGGCTTTCATGATGTCCCTTAACCATTCGCAATCTATCCGTTTATCCAAGTA</canonical_amplicon>
		<polymorphic_amplicon>GATCGTGTCAACGACTCTATTACTTCAAAGTTTGGGCAAACACTAATAACAGTGGGGAGCCCCCACTTCTGATGATGCTTCATCTTTGCAMTTTTTTTTGAATTATAATTTAGAAATCCAAACGGACTGGGTACCGTATTCTTCTACACTAATCGTCAAACTTCTAATGACATCATAATCTGTCGCTCTGATTATGGCTTTCATGATGTCCCTTAACCATTCGCAATCTATCCGTTTATCCAAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12253</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>54918</contig_pos>
        <strand>+</strand>
        <context>AGGTGTAAAT[A/G]AGAAGATTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAAATTGCTTATGTGAAATTGTGAAAAACAAACGTTTGGAGGTGTAAAT</left_flank>
        <right_flank>AGAAGATTGAAATGAAAGGCTGGGAGACTTGAACTGAAATTCTATTTTTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGGATTCTTCTTACGGATACGATATTTGCAAACCGCGCCTAACTCCCTCTCCTTCGTTTTCTCAGCCTGAAAAAAGTCAACTGATAAATACTGCTGCCACGGAATTGACTCTCTTTAGCCCACAGTTACCTAATATTTATCTCAGATTCGCGGAATATGACATAATATTATCCAATGTTTGTTTATTGAACTGAACAAGTGGTCCCGGGATACACACAAGGGCCTAATCCACAGTAAATACCTGAGAAACGGATCTTACCTCTTTATAATGAGCATTGAGCCATAAGTTCTGAAGAACTGTATGGTTATGAGGGGAGAATTTATGACACTCCAGAAGTCTGTAAAGCGATTTCCAGTTCTGGGTGGAGTAGTAGACGAGTGCCTGGGCTTTCAAAGCAGATTCCATACTCTGGTAACATTGTGGAAGGTTGTAGATGAATGTTGCCTGTAAATTGCTTATGTGAAATTGTGAAAAACAAACGTTTGGAGGTGTAAATGAGAAGATTGAAATGAAAGGCTGGGAGACTTGAACTGAAATTCTATTTTTGAAACTGTTAATGAAGTTTGATTTTTCTAAATGTCCGATGACTATTTTTTTATCATTTTTTAACACTCCAGGATCAAAAACTCTCCAGAAAGTTTTATGCAATCGGAAGCTGTGAAATTTTCTCGGCCAACTTTCATAAGGCTGATGTTACTTTGCCGCCACTTTCTTTTAACCTTATGAGCAAAATATGATATTTGAATATTGACTACTTGCTCTTTGAGCCCTATAGCCTCTTCCCTCTCAAAATCTTCAACATCTGCTCCCTTCGGTTTTCACCGTCGTCGTCACCATCATCAAGCTTCCCATCCATAATGGACTTTTGTTTGCTTTATAGAAAGAAAAAAGAAAAGCACGCGAGCAGCAGCGCCATGAGGCCTACCGTACTCCTCTTTTCCGCCACCTTATTTCCTTCTGTCACCAATTTCTTGCTACTGGCTTGACTCTGACTCAA</canonical>
            <polymorphic>AATGGATTCTTCTTACGGATACGATATTTGCAAACCGCGCCTAACTCCCTCTCCTTCGTTTTCTCAGCCTGAAAAAAGTCAACTGATAAATACTGCTGCCACGGAATTGACTCTCTTTAGCCCACAGTTACCTAATATTTATCTCAGATTCGCGGAATATGACATAATATTATCCAATGTTTGTTTATTGAACTGAACAAGTGGTCCCGGGATACACACAAGGGCCTAATCCACAGTAAATACCTGAGAAACGGATCTTACCTCTTTATAATGAGCATTGAGCCATAAGTTCTGAAGAACTGTATGGTTATGAGGGGAGAATTTATGACACTCCAGAAGTCTGTAAAGCGATTTCCAGTTCTGGGTGGAGTAGTAGACGAGTGCCTGGGCTTTCAAAGCAGATTCCATACTCTGGTAACATTGTGGAAGGTTGTAGATGAATGTTGCCTGTAAATTGCTTATGTGAAATTGTGAAAAACAAACGTTTGGAGGTGTAAATRAGAAGATTGAAATGAAAGGCTGGGAGACTTGAACTGAAATTCTATTTTTGAAACTGTTAATGAAGTTTGATTTTTCTAAATGTCCGATGACTATTTTTTTATCATTTTTTAACACTCCAGGATCAAAAACTCTCCAGAAAGTTTTATGCAATCGGAAGCTGTGAAATTTTCTCGGCCAACTTTCATAAGGCTGATGTTACTTTGCCGCCACTTTCTTTTAACCTTATGAGCAAAATATGATATTTGAATATTGACTACTTGCTCTTTGAGCCCTATAGCCTCTTCCCTCTCAAAATCTTCAACATCTGCTCCCTTCGGTTTTCACCGTCGTCGTCACCATCATCAAGCTTCCCATCCATAATGGACTTTTGTTTGCTTTATAGAAAGAAAAAAGAAAAGCACGCGAGCAGCAGCGCCATGAGGCCTACCGTACTCCTCTTTTCCGCCACCTTATTTCCTTCTGTCACCAATTTCTTGCTACTGGCTTGACTCTGACTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTCAAAGCAGATTCCATACT</pcr_primer_p1>
		<pcr_primer_p2>TTCTGGAGAGTTTTTGATCCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTCAAAGCAGATTCCATACTCTGGTAACATTGTGGAAGGTTGTAGATGAATGTTGCCTGTAAATTGCTTATGTGAAATTGTGAAAAACAAACGTTTGGAGGTGTAAATGAGAAGATTGAAATGAAAGGCTGGGAGACTTGAACTGAAATTCTATTTTTGAAACTGTTAATGAAGTTTGATTTTTCTAAATGTCCGATGACTATTTTTTTATCATTTTTTAACACTCCAGGATCAAAAACTCTCCAGAA</canonical_amplicon>
		<polymorphic_amplicon>CTTTCAAAGCAGATTCCATACTCTGGTAACATTGTGGAAGGTTGTAGATGAATGTTGCCTGTAAATTGCTTATGTGAAATTGTGAAAAACAAACGTTTGGAGGTGTAAATRAGAAGATTGAAATGAAAGGCTGGGAGACTTGAACTGAAATTCTATTTTTGAAACTGTTAATGAAGTTTGATTTTTCTAAATGTCCGATGACTATTTTTTTATCATTTTTTAACACTCCAGGATCAAAAACTCTCCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12254</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>151134</contig_pos>
        <strand>+</strand>
        <context>TGTAAAGGTA[A/T]TCCGATGGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGCTCAATGATGTTCGTGTTTGATCAGCCAGGGTGCCCTCTGTAAAGGTA</left_flank>
        <right_flank>TCCGATGGTCTGGCAGAGATAGGGACGATTAGGAGAGACAGAAAGAATGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAAAGTAGGTTCTTCTAGTTTTCAAAACTATATTTTTCAAAATCTAACTTTCATATTCCTCTACAAAAATCCAGGATCACTGGACCATGTATGGAATGTGAACGAGTGGCGACGGGATATCGAAGAAAGAATTAGTGAGATTTATTTTTTGAGAGAAAAAAAATGTTCTGAAATATTGAGTGGGTTTTGTCTAAGCATTCGTAAATCAAATTATCGGTGGGATAACACAGCCTGTGATTTAGATTTGATCATACTCAGAATTTTCTGATTTCTGCTAGTCTTCGTAACCTAACGAATCAAAAATCAACAAGATGTGTCTGTCGTTGGACACCAAAGGAGTAGTCTGTGTGACTAATTTCCGGTTAACAAAAAAATTTGATTAGCTGCTGTCCAGTCATTTTGAGTTCGCAGGGTAAAGAACAAGAAACATATGGGCGGTCCTAAAACGCTCAATGATGTTCGTGTTTGATCAGCCAGGGTGCCCTCTGTAAAGGTAATCCGATGGTCTGGCAGAGATAGGGACGATTAGGAGAGACAGAAAGAATGGAAGGGCAAAACTAAGACTGTTGGTTTTTGAAAAATGAAATTTTAAATTGAAGTTTACTAACACTAAAACAATGCGAAGCTGATCTCCAAAAACATTTCGTTTTAGATGCTAACAATGAAAAATGGATTTTGATGGCCACCAGCGGAGCATGCCATCCAGCTCTAAATATTGCCAAGCAGCACAAAGAGAAGGTTTCGGGACTATTCCTGATGTGTCCTGGTACAGGTTTGGATATGAGTTTTGTGGATACGATTCAACCAGGAGCATTGAAGTATCTTATGAAGACCGGATCCATCAAGTATCCTCCATCAAAACACGGACATCCGGCTCTTTTGAACATTGAGTGTCTTCAGGATTTCTTGAAAGTAAGCCAGCCTTATTACCATATCGCCCACCTAAACGGTCAACTTTGAACTTGATTATCTCGATTCCTGTGAAAGGTATGAAAAA</canonical>
            <polymorphic>TTGAAAAGTAGGTTCTTCTAGTTTTCAAAACTATATTTTTCAAAATCTAACTTTCATATTCCTCTACAAAAATCCAGGATCACTGGACCATGTATGGAATGTGAACGAGTGGCGACGGGATATCGAAGAAAGAATTAGTGAGATTTATTTTTTGAGAGAAAAAAAATGTTCTGAAATATTGAGTGGGTTTTGTCTAAGCATTCGTAAATCAAATTATCGGTGGGATAACACAGCCTGTGATTTAGATTTGATCATACTCAGAATTTTCTGATTTCTGCTAGTCTTCGTAACCTAACGAATCAAAAATCAACAAGATGTGTCTGTCGTTGGACACCAAAGGAGTAGTCTGTGTGACTAATTTCCGGTTAACAAAAAAATTTGATTAGCTGCTGTCCAGTCATTTTGAGTTCGCAGGGTAAAGAACAAGAAACATATGGGCGGTCCTAAAACGCTCAATGATGTTCGTGTTTGATCAGCCAGGGTGCCCTCTGTAAAGGTAWTCCGATGGTCTGGCAGAGATAGGGACGATTAGGAGAGACAGAAAGAATGGAAGGGCAAAACTAAGACTGTTGGTTTTTGAAAAATGAAATTTTAAATTGAAGTTTACTAACACTAAAACAATGCGAAGCTGATCTCCAAAAACATTTCGTTTTAGATGCTAACAATGAAAAATGGATTTTGATGGCCACCAGCGGAGCATGCCATCCAGCTCTAAATATTGCCAAGCAGCACAAAGAGAAGGTTTCGGGACTATTCCTGATGTGTCCTGGTACAGGTTTGGATATGAGTTTTGTGGATACGATTCAACCAGGAGCATTGAAGTATCTTATGAAGACCGGATCCATCAAGTATCCTCCATCAAAACACGGACATCCGGCTCTTTTGAACATTGAGTGTCTTCAGGATTTCTTGAAAGTAAGCCAGCCTTATTACCATATCGCCCACCTAAACGGTCAACTTTGAACTTGATTATCTCGATTCCTGTGAAAGGTATGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCAACAAGATGTGTCTGTC</pcr_primer_p1>
		<pcr_primer_p2>TTCCATTCTTTCTGTCTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATCAACAAGATGTGTCTGTCGTTGGACACCAAAGGAGTAGTCTGTGTGACTAATTTCCGGTTAACAAAAAAATTTGATTAGCTGCTGTCCAGTCATTTTGAGTTCGCAGGGTAAAGAACAAGAAACATATGGGCGGTCCTAAAACGCTCAATGATGTTCGTGTTTGATCAGCCAGGGTGCCCTCTGTAAAGGTAATCCGATGGTCTGGCAGAGATAGGGACGATTAGGAGAGACAGAAAGAATGGAA</canonical_amplicon>
		<polymorphic_amplicon>AAAATCAACAAGATGTGTCTGTCGTTGGACACCAAAGGAGTAGTCTGTGTGACTAATTTCCGGTTAACAAAAAAATTTGATTAGCTGCTGTCCAGTCATTTTGAGTTCGCAGGGTAAAGAACAAGAAACATATGGGCGGTCCTAAAACGCTCAATGATGTTCGTGTTTGATCAGCCAGGGTGCCCTCTGTAAAGGTAWTCCGATGGTCTGGCAGAGATAGGGACGATTAGGAGAGACAGAAAGAATGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12255</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>151157</contig_pos>
        <strand>+</strand>
        <context>GCAGAGATAG[A/G]GACGATTAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAGCCAGGGTGCCCTCTGTAAAGGTAATCCGATGGTCTGGCAGAGATAG</left_flank>
        <right_flank>GACGATTAGGAGAGACAGAAAGAATGGAAGGGCAAAACTAAGACTGTTGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAAAACTATATTTTTCAAAATCTAACTTTCATATTCCTCTACAAAAATCCAGGATCACTGGACCATGTATGGAATGTGAACGAGTGGCGACGGGATATCGAAGAAAGAATTAGTGAGATTTATTTTTTGAGAGAAAAAAAATGTTCTGAAATATTGAGTGGGTTTTGTCTAAGCATTCGTAAATCAAATTATCGGTGGGATAACACAGCCTGTGATTTAGATTTGATCATACTCAGAATTTTCTGATTTCTGCTAGTCTTCGTAACCTAACGAATCAAAAATCAACAAGATGTGTCTGTCGTTGGACACCAAAGGAGTAGTCTGTGTGACTAATTTCCGGTTAACAAAAAAATTTGATTAGCTGCTGTCCAGTCATTTTGAGTTCGCAGGGTAAAGAACAAGAAACATATGGGCGGTCCTAAAACGCTCAATGATGTTCGTGTTTGATCAGCCAGGGTGCCCTCTGTAAAGGTAATCCGATGGTCTGGCAGAGATAGGGACGATTAGGAGAGACAGAAAGAATGGAAGGGCAAAACTAAGACTGTTGGTTTTTGAAAAATGAAATTTTAAATTGAAGTTTACTAACACTAAAACAATGCGAAGCTGATCTCCAAAAACATTTCGTTTTAGATGCTAACAATGAAAAATGGATTTTGATGGCCACCAGCGGAGCATGCCATCCAGCTCTAAATATTGCCAAGCAGCACAAAGAGAAGGTTTCGGGACTATTCCTGATGTGTCCTGGTACAGGTTTGGATATGAGTTTTGTGGATACGATTCAACCAGGAGCATTGAAGTATCTTATGAAGACCGGATCCATCAAGTATCCTCCATCAAAACACGGACATCCGGCTCTTTTGAACATTGAGTGTCTTCAGGATTTCTTGAAAGTAAGCCAGCCTTATTACCATATCGCCCACCTAAACGGTCAACTTTGAACTTGATTATCTCGATTCCTGTGAAAGGTATGAAAAAGTGGTAAACTGTAATATTTTTGA</canonical>
            <polymorphic>TTCAAAACTATATTTTTCAAAATCTAACTTTCATATTCCTCTACAAAAATCCAGGATCACTGGACCATGTATGGAATGTGAACGAGTGGCGACGGGATATCGAAGAAAGAATTAGTGAGATTTATTTTTTGAGAGAAAAAAAATGTTCTGAAATATTGAGTGGGTTTTGTCTAAGCATTCGTAAATCAAATTATCGGTGGGATAACACAGCCTGTGATTTAGATTTGATCATACTCAGAATTTTCTGATTTCTGCTAGTCTTCGTAACCTAACGAATCAAAAATCAACAAGATGTGTCTGTCGTTGGACACCAAAGGAGTAGTCTGTGTGACTAATTTCCGGTTAACAAAAAAATTTGATTAGCTGCTGTCCAGTCATTTTGAGTTCGCAGGGTAAAGAACAAGAAACATATGGGCGGTCCTAAAACGCTCAATGATGTTCGTGTTTGATCAGCCAGGGTGCCCTCTGTAAAGGTAATCCGATGGTCTGGCAGAGATAGRGACGATTAGGAGAGACAGAAAGAATGGAAGGGCAAAACTAAGACTGTTGGTTTTTGAAAAATGAAATTTTAAATTGAAGTTTACTAACACTAAAACAATGCGAAGCTGATCTCCAAAAACATTTCGTTTTAGATGCTAACAATGAAAAATGGATTTTGATGGCCACCAGCGGAGCATGCCATCCAGCTCTAAATATTGCCAAGCAGCACAAAGAGAAGGTTTCGGGACTATTCCTGATGTGTCCTGGTACAGGTTTGGATATGAGTTTTGTGGATACGATTCAACCAGGAGCATTGAAGTATCTTATGAAGACCGGATCCATCAAGTATCCTCCATCAAAACACGGACATCCGGCTCTTTTGAACATTGAGTGTCTTCAGGATTTCTTGAAAGTAAGCCAGCCTTATTACCATATCGCCCACCTAAACGGTCAACTTTGAACTTGATTATCTCGATTCCTGTGAAAGGTATGAAAAAGTGGTAAACTGTAATATTTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGATTAGCTGCTGTCCAGT</pcr_primer_p1>
		<pcr_primer_p2>CTTCGCATTGTTTTAGTGTTAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGATTAGCTGCTGTCCAGTCATTTTGAGTTCGCAGGGTAAAGAACAAGAAACATATGGGCGGTCCTAAAACGCTCAATGATGTTCGTGTTTGATCAGCCAGGGTGCCCTCTGTAAAGGTAATCCGATGGTCTGGCAGAGATAGGGACGATTAGGAGAGACAGAAAGAATGGAAGGGCAAAACTAAGACTGTTGGTTTTTGAAAAATGAAATTTTAAATTGAAGTTTACTAACACTAAAACAATGCGAAG</canonical_amplicon>
		<polymorphic_amplicon>TTGATTAGCTGCTGTCCAGTCATTTTGAGTTCGCAGGGTAAAGAACAAGAAACATATGGGCGGTCCTAAAACGCTCAATGATGTTCGTGTTTGATCAGCCAGGGTGCCCTCTGTAAAGGTAATCCGATGGTCTGGCAGAGATAGRGACGATTAGGAGAGACAGAAAGAATGGAAGGGCAAAACTAAGACTGTTGGTTTTTGAAAAATGAAATTTTAAATTGAAGTTTACTAACACTAAAACAATGCGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12256</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>151204</contig_pos>
        <strand>+</strand>
        <context>ACTAAGACTG[C/T]TGGTTTTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGGGACGATTAGGAGAGACAGAAAGAATGGAAGGGCAAAACTAAGACTG</left_flank>
        <right_flank>TGGTTTTTGAAAAATGAAATTTTAAATTGAAGTTTACTAACACTAAAACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCCAGGATCACTGGACCATGTATGGAATGTGAACGAGTGGCGACGGGATATCGAAGAAAGAATTAGTGAGATTTATTTTTTGAGAGAAAAAAAATGTTCTGAAATATTGAGTGGGTTTTGTCTAAGCATTCGTAAATCAAATTATCGGTGGGATAACACAGCCTGTGATTTAGATTTGATCATACTCAGAATTTTCTGATTTCTGCTAGTCTTCGTAACCTAACGAATCAAAAATCAACAAGATGTGTCTGTCGTTGGACACCAAAGGAGTAGTCTGTGTGACTAATTTCCGGTTAACAAAAAAATTTGATTAGCTGCTGTCCAGTCATTTTGAGTTCGCAGGGTAAAGAACAAGAAACATATGGGCGGTCCTAAAACGCTCAATGATGTTCGTGTTTGATCAGCCAGGGTGCCCTCTGTAAAGGTAATCCGATGGTCTGGCAGAGATAGGGACGATTAGGAGAGACAGAAAGAATGGAAGGGCAAAACTAAGACTGTTGGTTTTTGAAAAATGAAATTTTAAATTGAAGTTTACTAACACTAAAACAATGCGAAGCTGATCTCCAAAAACATTTCGTTTTAGATGCTAACAATGAAAAATGGATTTTGATGGCCACCAGCGGAGCATGCCATCCAGCTCTAAATATTGCCAAGCAGCACAAAGAGAAGGTTTCGGGACTATTCCTGATGTGTCCTGGTACAGGTTTGGATATGAGTTTTGTGGATACGATTCAACCAGGAGCATTGAAGTATCTTATGAAGACCGGATCCATCAAGTATCCTCCATCAAAACACGGACATCCGGCTCTTTTGAACATTGAGTGTCTTCAGGATTTCTTGAAAGTAAGCCAGCCTTATTACCATATCGCCCACCTAAACGGTCAACTTTGAACTTGATTATCTCGATTCCTGTGAAAGGTATGAAAAAGTGGTAAACTGTAATATTTTTGAAATTACGATTTATATTTTGTTAATGGACCGCCTAATGATATCTCTTA</canonical>
            <polymorphic>AATCCAGGATCACTGGACCATGTATGGAATGTGAACGAGTGGCGACGGGATATCGAAGAAAGAATTAGTGAGATTTATTTTTTGAGAGAAAAAAAATGTTCTGAAATATTGAGTGGGTTTTGTCTAAGCATTCGTAAATCAAATTATCGGTGGGATAACACAGCCTGTGATTTAGATTTGATCATACTCAGAATTTTCTGATTTCTGCTAGTCTTCGTAACCTAACGAATCAAAAATCAACAAGATGTGTCTGTCGTTGGACACCAAAGGAGTAGTCTGTGTGACTAATTTCCGGTTAACAAAAAAATTTGATTAGCTGCTGTCCAGTCATTTTGAGTTCGCAGGGTAAAGAACAAGAAACATATGGGCGGTCCTAAAACGCTCAATGATGTTCGTGTTTGATCAGCCAGGGTGCCCTCTGTAAAGGTAATCCGATGGTCTGGCAGAGATAGGGACGATTAGGAGAGACAGAAAGAATGGAAGGGCAAAACTAAGACTGYTGGTTTTTGAAAAATGAAATTTTAAATTGAAGTTTACTAACACTAAAACAATGCGAAGCTGATCTCCAAAAACATTTCGTTTTAGATGCTAACAATGAAAAATGGATTTTGATGGCCACCAGCGGAGCATGCCATCCAGCTCTAAATATTGCCAAGCAGCACAAAGAGAAGGTTTCGGGACTATTCCTGATGTGTCCTGGTACAGGTTTGGATATGAGTTTTGTGGATACGATTCAACCAGGAGCATTGAAGTATCTTATGAAGACCGGATCCATCAAGTATCCTCCATCAAAACACGGACATCCGGCTCTTTTGAACATTGAGTGTCTTCAGGATTTCTTGAAAGTAAGCCAGCCTTATTACCATATCGCCCACCTAAACGGTCAACTTTGAACTTGATTATCTCGATTCCTGTGAAAGGTATGAAAAAGTGGTAAACTGTAATATTTTTGAAATTACGATTTATATTTTGTTAATGGACCGCCTAATGATATCTCTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>498 384 60 58</canonical_bands>
                <polymorphic_bands>882 60 58</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGATTAGCTGCTGTCCAGT</pcr_primer_p1>
		<pcr_primer_p2>CTTCGCATTGTTTTAGTGTTAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGATTAGCTGCTGTCCAGTCATTTTGAGTTCGCAGGGTAAAGAACAAGAAACATATGGGCGGTCCTAAAACGCTCAATGATGTTCGTGTTTGATCAGCCAGGGTGCCCTCTGTAAAGGTAATCCGATGGTCTGGCAGAGATAGGGACGATTAGGAGAGACAGAAAGAATGGAAGGGCAAAACTAAGACTGTTGGTTTTTGAAAAATGAAATTTTAAATTGAAGTTTACTAACACTAAAACAATGCGAAG</canonical_amplicon>
		<polymorphic_amplicon>TTGATTAGCTGCTGTCCAGTCATTTTGAGTTCGCAGGGTAAAGAACAAGAAACATATGGGCGGTCCTAAAACGCTCAATGATGTTCGTGTTTGATCAGCCAGGGTGCCCTCTGTAAAGGTAATCCGATGGTCTGGCAGAGATAGGGACGATTAGGAGAGACAGAAAGAATGGAAGGGCAAAACTAAGACTGYTGGTTTTTGAAAAATGAAATTTTAAATTGAAGTTTACTAACACTAAAACAATGCGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12257</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>151224</contig_pos>
        <strand>+</strand>
        <context>AAAAATGAAA[A/T]TTTAAATTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAAAGAATGGAAGGGCAAAACTAAGACTGTTGGTTTTTGAAAAATGAAA</left_flank>
        <right_flank>TTTAAATTGAAGTTTACTAACACTAAAACAATGCGAAGCTGATCTCCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTATGGAATGTGAACGAGTGGCGACGGGATATCGAAGAAAGAATTAGTGAGATTTATTTTTTGAGAGAAAAAAAATGTTCTGAAATATTGAGTGGGTTTTGTCTAAGCATTCGTAAATCAAATTATCGGTGGGATAACACAGCCTGTGATTTAGATTTGATCATACTCAGAATTTTCTGATTTCTGCTAGTCTTCGTAACCTAACGAATCAAAAATCAACAAGATGTGTCTGTCGTTGGACACCAAAGGAGTAGTCTGTGTGACTAATTTCCGGTTAACAAAAAAATTTGATTAGCTGCTGTCCAGTCATTTTGAGTTCGCAGGGTAAAGAACAAGAAACATATGGGCGGTCCTAAAACGCTCAATGATGTTCGTGTTTGATCAGCCAGGGTGCCCTCTGTAAAGGTAATCCGATGGTCTGGCAGAGATAGGGACGATTAGGAGAGACAGAAAGAATGGAAGGGCAAAACTAAGACTGTTGGTTTTTGAAAAATGAAATTTTAAATTGAAGTTTACTAACACTAAAACAATGCGAAGCTGATCTCCAAAAACATTTCGTTTTAGATGCTAACAATGAAAAATGGATTTTGATGGCCACCAGCGGAGCATGCCATCCAGCTCTAAATATTGCCAAGCAGCACAAAGAGAAGGTTTCGGGACTATTCCTGATGTGTCCTGGTACAGGTTTGGATATGAGTTTTGTGGATACGATTCAACCAGGAGCATTGAAGTATCTTATGAAGACCGGATCCATCAAGTATCCTCCATCAAAACACGGACATCCGGCTCTTTTGAACATTGAGTGTCTTCAGGATTTCTTGAAAGTAAGCCAGCCTTATTACCATATCGCCCACCTAAACGGTCAACTTTGAACTTGATTATCTCGATTCCTGTGAAAGGTATGAAAAAGTGGTAAACTGTAATATTTTTGAAATTACGATTTATATTTTGTTAATGGACCGCCTAATGATATCTCTTACTGTAAATGAAATATATGAG</canonical>
            <polymorphic>TGTATGGAATGTGAACGAGTGGCGACGGGATATCGAAGAAAGAATTAGTGAGATTTATTTTTTGAGAGAAAAAAAATGTTCTGAAATATTGAGTGGGTTTTGTCTAAGCATTCGTAAATCAAATTATCGGTGGGATAACACAGCCTGTGATTTAGATTTGATCATACTCAGAATTTTCTGATTTCTGCTAGTCTTCGTAACCTAACGAATCAAAAATCAACAAGATGTGTCTGTCGTTGGACACCAAAGGAGTAGTCTGTGTGACTAATTTCCGGTTAACAAAAAAATTTGATTAGCTGCTGTCCAGTCATTTTGAGTTCGCAGGGTAAAGAACAAGAAACATATGGGCGGTCCTAAAACGCTCAATGATGTTCGTGTTTGATCAGCCAGGGTGCCCTCTGTAAAGGTAATCCGATGGTCTGGCAGAGATAGGGACGATTAGGAGAGACAGAAAGAATGGAAGGGCAAAACTAAGACTGTTGGTTTTTGAAAAATGAAAWTTTAAATTGAAGTTTACTAACACTAAAACAATGCGAAGCTGATCTCCAAAAACATTTCGTTTTAGATGCTAACAATGAAAAATGGATTTTGATGGCCACCAGCGGAGCATGCCATCCAGCTCTAAATATTGCCAAGCAGCACAAAGAGAAGGTTTCGGGACTATTCCTGATGTGTCCTGGTACAGGTTTGGATATGAGTTTTGTGGATACGATTCAACCAGGAGCATTGAAGTATCTTATGAAGACCGGATCCATCAAGTATCCTCCATCAAAACACGGACATCCGGCTCTTTTGAACATTGAGTGTCTTCAGGATTTCTTGAAAGTAAGCCAGCCTTATTACCATATCGCCCACCTAAACGGTCAACTTTGAACTTGATTATCTCGATTCCTGTGAAAGGTATGAAAAAGTGGTAAACTGTAATATTTTTGAAATTACGATTTATATTTTGTTAATGGACCGCCTAATGATATCTCTTACTGTAAATGAAATATATGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>503 212 171 114</canonical_bands>
                <polymorphic_bands>715 171 114</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>429 212 95 79 67 50 42 19 7</canonical_bands>
                <polymorphic_bands>429 219 95 79 67 50 42 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATTAGGAGAGACAGAAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TACCAGGACACATCAGGAATA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CGATTAGGAGAGACAGAAAGAATGGAAGGGCAAAACTAAGACTGTTGGTTTTTGAAAAATGAAATTTTAAATTGAAGTTTACTAACACTAAAACAATGCGAAGCTGATCTCCAAAAACATTTCGTTTTAGATGCTAACAATGAAAAATGGATTTTGATGGCCACCAGCGGAGCATGCCATCCAGCTCTAAATATTGCCAAGCAGCACAAAGAGAAGGTTTCGGGACTATTCCTGATGTGTCCTGGTA</canonical_amplicon>
		<polymorphic_amplicon>CGATTAGGAGAGACAGAAAGAATGGAAGGGCAAAACTAAGACTGTTGGTTTTTGAAAAATGAAAWTTTAAATTGAAGTTTACTAACACTAAAACAATGCGAAGCTGATCTCCAAAAACATTTCGTTTTAGATGCTAACAATGAAAAATGGATTTTGATGGCCACCAGCGGAGCATGCCATCCAGCTCTAAATATTGCCAAGCAGCACAAAGAGAAGGTTTCGGGACTATTCCTGATGTGTCCTGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12258</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>151266</contig_pos>
        <strand></strand>
        <context>TGCGAAGCTG[A/T]WCTCCAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATGAAATTTTAAATTGAAGTTTACTAACACTAAAACAATGCGAAGCTG</left_flank>
        <right_flank>TCTCCAAAAACATTTCGTTTTAGATGCTAACAATGAAAAATGGATTTTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTAGTGAGATTTATTTTTTGAGAGAAAAAAAATGTTCTGAAATATTGAGTGGGTTTTGTCTAAGCATTCGTAAATCAAATTATCGGTGGGATAACACAGCCTGTGATTTAGATTTGATCATACTCAGAATTTTCTGATTTCTGCTAGTCTTCGTAACCTAACGAATCAAAAATCAACAAGATGTGTCTGTCGTTGGACACCAAAGGAGTAGTCTGTGTGACTAATTTCCGGTTAACAAAAAAATTTGATTAGCTGCTGTCCAGTCATTTTGAGTTCGCAGGGTAAAGAACAAGAAACATATGGGCGGTCCTAAAACGCTCAATGATGTTCGTGTTTGATCAGCCAGGGTGCCCTCTGTAAAGGTAATCCGATGGTCTGGCAGAGATAGGGACGATTAGGAGAGACAGAAAGAATGGAAGGGCAAAACTAAGACTGTTGGTTTTTGAAAAATGAAATTTTAAATTGAAGTTTACTAACACTAAAACAATGCGAAGCTGATCTCCAAAAACATTTCGTTTTAGATGCTAACAATGAAAAATGGATTTTGATGGCCACCAGCGGAGCATGCCATCCAGCTCTAAATATTGCCAAGCAGCACAAAGAGAAGGTTTCGGGACTATTCCTGATGTGTCCTGGTACAGGTTTGGATATGAGTTTTGTGGATACGATTCAACCAGGAGCATTGAAGTATCTTATGAAGACCGGATCCATCAAGTATCCTCCATCAAAACACGGACATCCGGCTCTTTTGAACATTGAGTGTCTTCAGGATTTCTTGAAAGTAAGCCAGCCTTATTACCATATCGCCCACCTAAACGGTCAACTTTGAACTTGATTATCTCGATTCCTGTGAAAGGTATGAAAAAGTGGTAAACTGTAATATTTTTGAAATTACGATTTATATTTTGTTAATGGACCGCCTAATGATATCTCTTACTGTAAATGAAATATATGAGCTCAAAGTTGTTCGGTTTGATGGGCTTCTATTAGAGGGTATA</canonical>
            <polymorphic>AATTAGTGAGATTTATTTTTTGAGAGAAAAAAAATGTTCTGAAATATTGAGTGGGTTTTGTCTAAGCATTCGTAAATCAAATTATCGGTGGGATAACACAGCCTGTGATTTAGATTTGATCATACTCAGAATTTTCTGATTTCTGCTAGTCTTCGTAACCTAACGAATCAAAAATCAACAAGATGTGTCTGTCGTTGGACACCAAAGGAGTAGTCTGTGTGACTAATTTCCGGTTAACAAAAAAATTTGATTAGCTGCTGTCCAGTCATTTTGAGTTCGCAGGGTAAAGAACAAGAAACATATGGGCGGTCCTAAAACGCTCAATGATGTTCGTGTTTGATCAGCCAGGGTGCCCTCTGTAAAGGTAATCCGATGGTCTGGCAGAGATAGGGACGATTAGGAGAGACAGAAAGAATGGAAGGGCAAAACTAAGACTGTTGGTTTTTGAAAAATGAAATTTTAAATTGAAGTTTACTAACACTAAAACAATGCGAAGCTGWTCTCCAAAAACATTTCGTTTTAGATGCTAACAATGAAAAATGGATTTTGATGGCCACCAGCGGAGCATGCCATCCAGCTCTAAATATTGCCAAGCAGCACAAAGAGAAGGTTTCGGGACTATTCCTGATGTGTCCTGGTACAGGTTTGGATATGAGTTTTGTGGATACGATTCAACCAGGAGCATTGAAGTATCTTATGAAGACCGGATCCATCAAGTATCCTCCATCAAAACACGGACATCCGGCTCTTTTGAACATTGAGTGTCTTCAGGATTTCTTGAAAGTAAGCCAGCCTTATTACCATATCGCCCACCTAAACGGTCAACTTTGAACTTGATTATCTCGATTCCTGTGAAAGGTATGAAAAAGTGGTAAACTGTAATATTTTTGAAATTACGATTTATATTTTGTTAATGGACCGCCTAATGATATCTCTTACTGTAAATGAAATATATGAGCTCAAAGTTGTTCGGTTTGATGGGCTTCTATTAGAGGGTATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>294 221 208 160 117</canonical_bands>
                <polymorphic_bands>368 294 221 117</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATTAGGAGAGACAGAAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TACCAGGACACATCAGGAATA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CGATTAGGAGAGACAGAAAGAATGGAAGGGCAAAACTAAGACTGTTGGTTTTTGAAAAATGAAATTTTAAATTGAAGTTTACTAACACTAAAACAATGCGAAGCTGATCTCCAAAAACATTTCGTTTTAGATGCTAACAATGAAAAATGGATTTTGATGGCCACCAGCGGAGCATGCCATCCAGCTCTAAATATTGCCAAGCAGCACAAAGAGAAGGTTTCGGGACTATTCCTGATGTGTCCTGGTA</canonical_amplicon>
		<polymorphic_amplicon>CGATTAGGAGAGACAGAAAGAATGGAAGGGCAAAACTAAGACTGTTGGTTTTTGAAAAATGAAATTTTAAATTGAAGTTTACTAACACTAAAACAATGCGAAGCTGWTCTCCAAAAACATTTCGTTTTAGATGCTAACAATGAAAAATGGATTTTGATGGCCACCAGCGGAGCATGCCATCCAGCTCTAAATATTGCCAAGCAGCACAAAGAGAAGGTTTCGGGACTATTCCTGATGTGTCCTGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12259</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>151282</contig_pos>
        <strand>+</strand>
        <context>AAAAACATTT[C/T]GTTTTAGATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAGTTTACTAACACTAAAACAATGCGAAGCTGATCTCCAAAAACATTT</left_flank>
        <right_flank>GTTTTAGATGCTAACAATGAAAAATGGATTTTGATGGCCACCAGCGGAGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGAGAGAAAAAAAATGTTCTGAAATATTGAGTGGGTTTTGTCTAAGCATTCGTAAATCAAATTATCGGTGGGATAACACAGCCTGTGATTTAGATTTGATCATACTCAGAATTTTCTGATTTCTGCTAGTCTTCGTAACCTAACGAATCAAAAATCAACAAGATGTGTCTGTCGTTGGACACCAAAGGAGTAGTCTGTGTGACTAATTTCCGGTTAACAAAAAAATTTGATTAGCTGCTGTCCAGTCATTTTGAGTTCGCAGGGTAAAGAACAAGAAACATATGGGCGGTCCTAAAACGCTCAATGATGTTCGTGTTTGATCAGCCAGGGTGCCCTCTGTAAAGGTAATCCGATGGTCTGGCAGAGATAGGGACGATTAGGAGAGACAGAAAGAATGGAAGGGCAAAACTAAGACTGTTGGTTTTTGAAAAATGAAATTTTAAATTGAAGTTTACTAACACTAAAACAATGCGAAGCTGATCTCCAAAAACATTTCGTTTTAGATGCTAACAATGAAAAATGGATTTTGATGGCCACCAGCGGAGCATGCCATCCAGCTCTAAATATTGCCAAGCAGCACAAAGAGAAGGTTTCGGGACTATTCCTGATGTGTCCTGGTACAGGTTTGGATATGAGTTTTGTGGATACGATTCAACCAGGAGCATTGAAGTATCTTATGAAGACCGGATCCATCAAGTATCCTCCATCAAAACACGGACATCCGGCTCTTTTGAACATTGAGTGTCTTCAGGATTTCTTGAAAGTAAGCCAGCCTTATTACCATATCGCCCACCTAAACGGTCAACTTTGAACTTGATTATCTCGATTCCTGTGAAAGGTATGAAAAAGTGGTAAACTGTAATATTTTTGAAATTACGATTTATATTTTGTTAATGGACCGCCTAATGATATCTCTTACTGTAAATGAAATATATGAGCTCAAAGTTGTTCGGTTTGATGGGCTTCTATTAGAGGGTATACGGTAAAAGGCTGAAA</canonical>
            <polymorphic>TTTTTGAGAGAAAAAAAATGTTCTGAAATATTGAGTGGGTTTTGTCTAAGCATTCGTAAATCAAATTATCGGTGGGATAACACAGCCTGTGATTTAGATTTGATCATACTCAGAATTTTCTGATTTCTGCTAGTCTTCGTAACCTAACGAATCAAAAATCAACAAGATGTGTCTGTCGTTGGACACCAAAGGAGTAGTCTGTGTGACTAATTTCCGGTTAACAAAAAAATTTGATTAGCTGCTGTCCAGTCATTTTGAGTTCGCAGGGTAAAGAACAAGAAACATATGGGCGGTCCTAAAACGCTCAATGATGTTCGTGTTTGATCAGCCAGGGTGCCCTCTGTAAAGGTAATCCGATGGTCTGGCAGAGATAGGGACGATTAGGAGAGACAGAAAGAATGGAAGGGCAAAACTAAGACTGTTGGTTTTTGAAAAATGAAATTTTAAATTGAAGTTTACTAACACTAAAACAATGCGAAGCTGATCTCCAAAAACATTTYGTTTTAGATGCTAACAATGAAAAATGGATTTTGATGGCCACCAGCGGAGCATGCCATCCAGCTCTAAATATTGCCAAGCAGCACAAAGAGAAGGTTTCGGGACTATTCCTGATGTGTCCTGGTACAGGTTTGGATATGAGTTTTGTGGATACGATTCAACCAGGAGCATTGAAGTATCTTATGAAGACCGGATCCATCAAGTATCCTCCATCAAAACACGGACATCCGGCTCTTTTGAACATTGAGTGTCTTCAGGATTTCTTGAAAGTAAGCCAGCCTTATTACCATATCGCCCACCTAAACGGTCAACTTTGAACTTGATTATCTCGATTCCTGTGAAAGGTATGAAAAAGTGGTAAACTGTAATATTTTTGAAATTACGATTTATATTTTGTTAATGGACCGCCTAATGATATCTCTTACTGTAAATGAAATATATGAGCTCAAAGTTGTTCGGTTTGATGGGCTTCTATTAGAGGGTATACGGTAAAAGGCTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATTAGGAGAGACAGAAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TACCAGGACACATCAGGAATA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CGATTAGGAGAGACAGAAAGAATGGAAGGGCAAAACTAAGACTGTTGGTTTTTGAAAAATGAAATTTTAAATTGAAGTTTACTAACACTAAAACAATGCGAAGCTGATCTCCAAAAACATTTCGTTTTAGATGCTAACAATGAAAAATGGATTTTGATGGCCACCAGCGGAGCATGCCATCCAGCTCTAAATATTGCCAAGCAGCACAAAGAGAAGGTTTCGGGACTATTCCTGATGTGTCCTGGTA</canonical_amplicon>
		<polymorphic_amplicon>CGATTAGGAGAGACAGAAAGAATGGAAGGGCAAAACTAAGACTGTTGGTTTTTGAAAAATGAAATTTTAAATTGAAGTTTACTAACACTAAAACAATGCGAAGCTGATCTCCAAAAACATTTYGTTTTAGATGCTAACAATGAAAAATGGATTTTGATGGCCACCAGCGGAGCATGCCATCCAGCTCTAAATATTGCCAAGCAGCACAAAGAGAAGGTTTCGGGACTATTCCTGATGTGTCCTGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12260</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>151358</contig_pos>
        <strand>+</strand>
        <context>AAATATTGCC[A/C]AGCAGCACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGATTTTGATGGCCACCAGCGGAGCATGCCATCCAGCTCTAAATATTGCC</left_flank>
        <right_flank>AGCAGCACAAAGAGAAGGTTTCGGGACTATTCCTGATGTGTCCTGGTACA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAACACAGCCTGTGATTTAGATTTGATCATACTCAGAATTTTCTGATTTCTGCTAGTCTTCGTAACCTAACGAATCAAAAATCAACAAGATGTGTCTGTCGTTGGACACCAAAGGAGTAGTCTGTGTGACTAATTTCCGGTTAACAAAAAAATTTGATTAGCTGCTGTCCAGTCATTTTGAGTTCGCAGGGTAAAGAACAAGAAACATATGGGCGGTCCTAAAACGCTCAATGATGTTCGTGTTTGATCAGCCAGGGTGCCCTCTGTAAAGGTAATCCGATGGTCTGGCAGAGATAGGGACGATTAGGAGAGACAGAAAGAATGGAAGGGCAAAACTAAGACTGTTGGTTTTTGAAAAATGAAATTTTAAATTGAAGTTTACTAACACTAAAACAATGCGAAGCTGATCTCCAAAAACATTTCGTTTTAGATGCTAACAATGAAAAATGGATTTTGATGGCCACCAGCGGAGCATGCCATCCAGCTCTAAATATTGCCAAGCAGCACAAAGAGAAGGTTTCGGGACTATTCCTGATGTGTCCTGGTACAGGTTTGGATATGAGTTTTGTGGATACGATTCAACCAGGAGCATTGAAGTATCTTATGAAGACCGGATCCATCAAGTATCCTCCATCAAAACACGGACATCCGGCTCTTTTGAACATTGAGTGTCTTCAGGATTTCTTGAAAGTAAGCCAGCCTTATTACCATATCGCCCACCTAAACGGTCAACTTTGAACTTGATTATCTCGATTCCTGTGAAAGGTATGAAAAAGTGGTAAACTGTAATATTTTTGAAATTACGATTTATATTTTGTTAATGGACCGCCTAATGATATCTCTTACTGTAAATGAAATATATGAGCTCAAAGTTGTTCGGTTTGATGGGCTTCTATTAGAGGGTATACGGTAAAAGGCTGAAAACAACTACTCTAATTTCAGACAAGCATTTGTAACAGCCCGGAGAAGACTATTGACATCACTTGTCCAGTATTAATT</canonical>
            <polymorphic>ATAACACAGCCTGTGATTTAGATTTGATCATACTCAGAATTTTCTGATTTCTGCTAGTCTTCGTAACCTAACGAATCAAAAATCAACAAGATGTGTCTGTCGTTGGACACCAAAGGAGTAGTCTGTGTGACTAATTTCCGGTTAACAAAAAAATTTGATTAGCTGCTGTCCAGTCATTTTGAGTTCGCAGGGTAAAGAACAAGAAACATATGGGCGGTCCTAAAACGCTCAATGATGTTCGTGTTTGATCAGCCAGGGTGCCCTCTGTAAAGGTAATCCGATGGTCTGGCAGAGATAGGGACGATTAGGAGAGACAGAAAGAATGGAAGGGCAAAACTAAGACTGTTGGTTTTTGAAAAATGAAATTTTAAATTGAAGTTTACTAACACTAAAACAATGCGAAGCTGATCTCCAAAAACATTTCGTTTTAGATGCTAACAATGAAAAATGGATTTTGATGGCCACCAGCGGAGCATGCCATCCAGCTCTAAATATTGCCMAGCAGCACAAAGAGAAGGTTTCGGGACTATTCCTGATGTGTCCTGGTACAGGTTTGGATATGAGTTTTGTGGATACGATTCAACCAGGAGCATTGAAGTATCTTATGAAGACCGGATCCATCAAGTATCCTCCATCAAAACACGGACATCCGGCTCTTTTGAACATTGAGTGTCTTCAGGATTTCTTGAAAGTAAGCCAGCCTTATTACCATATCGCCCACCTAAACGGTCAACTTTGAACTTGATTATCTCGATTCCTGTGAAAGGTATGAAAAAGTGGTAAACTGTAATATTTTTGAAATTACGATTTATATTTTGTTAATGGACCGCCTAATGATATCTCTTACTGTAAATGAAATATATGAGCTCAAAGTTGTTCGGTTTGATGGGCTTCTATTAGAGGGTATACGGTAAAAGGCTGAAAACAACTACTCTAATTTCAGACAAGCATTTGTAACAGCCCGGAGAAGACTATTGACATCACTTGTCCAGTATTAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAGATGCTAACAATGAAAAATG</pcr_primer_p1>
		<pcr_primer_p2>AAGACACTCAATGTTCAAAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTAGATGCTAACAATGAAAAATGGATTTTGATGGCCACCAGCGGAGCATGCCATCCAGCTCTAAATATTGCCAAGCAGCACAAAGAGAAGGTTTCGGGACTATTCCTGATGTGTCCTGGTACAGGTTTGGATATGAGTTTTGTGGATACGATTCAACCAGGAGCATTGAAGTATCTTATGAAGACCGGATCCATCAAGTATCCTCCATCAAAACACGGACATCCGGCTCTTTTGAACATTGAGTGTCTT</canonical_amplicon>
		<polymorphic_amplicon>TTTAGATGCTAACAATGAAAAATGGATTTTGATGGCCACCAGCGGAGCATGCCATCCAGCTCTAAATATTGCCMAGCAGCACAAAGAGAAGGTTTCGGGACTATTCCTGATGTGTCCTGGTACAGGTTTGGATATGAGTTTTGTGGATACGATTCAACCAGGAGCATTGAAGTATCTTATGAAGACCGGATCCATCAAGTATCCTCCATCAAAACACGGACATCCGGCTCTTTTGAACATTGAGTGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12261</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>153603</contig_pos>
        <strand>+</strand>
        <context>TGTCTCGTGC[C/T]CGATTTTCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCAACGGTTTTTTTTAATTCAGGGCTCGGCCTGGCTGGCTTGTCTCGTGC</left_flank>
        <right_flank>CGATTTTCAGAACTTTTTTCCTGAACTTTTTTTCAGAATTTTTTTCCGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACAAGATGATTGAACTGGAACACAGTTAGATCAAAACTCACTGAAAGATTGCCCAATATCGATAGACGAATTGCACGGCTAATAGGGATATGGTAGCTGCATAAGTGCTAGAGTAGGCAGCTGAAATTGAGATCTATTAGATTTGCAATTAGCCTTTTTACGTGTTAAATAAAACTTTTTTATCCAAATATCAGATTCTCGGTCAAAGTCTATGAAAACATTGCAGGTGGTATCTGGGGAAAAGTAGCCAGAAAAGTCTGGGTGCATAGGGACTCAAAAATTGGAAAAACTACAGTAACCCTTCAAAATATATTTTCAATCTTACCTAATAATATCATGGCAACTTCCTTTGAACATCCAAAGGGTCTTTCCAATGTGAAAAACGTAAAGCTCGCTTTGTAATTGTGGGTCATCTGAAAATTAACCAGTTTACAAAAAGTCATACTTGCAACGGTTTTTTTTAATTCAGGGCTCGGCCTGGCTGGCTTGTCTCGTGCCCGATTTTCAGAACTTTTTTCCTGAACTTTTTTTCAGAATTTTTTTCCGAAAAATTTTTGGTGTCAATTAAAAAAAACAAGTGTTTCTGTAAAGTCATTCTTGCCAAGAACAGGGTGTCGCTAAAAAGATTTTTTCACAGAAAATGAAAATTACGAAATTGCTTCAAATGTGGAAAACTCGGCCCGGTCCGGCCTGGCCAGACCAGGCCCAACCAGGCCTGTGGATCGGGCCCTGATTTTTCGAGTATACAAAAAATCTTAATTTTCACTTACCGGTTTTATAATAAACTCTGCTGTTGCAAACAGTATTCCCATTATGGAAAATGATAAAATTAGATATTTATATGCACCGAATACTTGTTTTGTATGGAACACGATGAGATATACCAGAAAAGAATTGACGACAAGAGTGGAGAAAAACCCGATTTCAGAAGCCAAAAACGACTTTTCAACCCATCGGATAGACGACATTTCTGAAAATGGGATGTTAGAAATCAGAGA</canonical>
            <polymorphic>AAACAAGATGATTGAACTGGAACACAGTTAGATCAAAACTCACTGAAAGATTGCCCAATATCGATAGACGAATTGCACGGCTAATAGGGATATGGTAGCTGCATAAGTGCTAGAGTAGGCAGCTGAAATTGAGATCTATTAGATTTGCAATTAGCCTTTTTACGTGTTAAATAAAACTTTTTTATCCAAATATCAGATTCTCGGTCAAAGTCTATGAAAACATTGCAGGTGGTATCTGGGGAAAAGTAGCCAGAAAAGTCTGGGTGCATAGGGACTCAAAAATTGGAAAAACTACAGTAACCCTTCAAAATATATTTTCAATCTTACCTAATAATATCATGGCAACTTCCTTTGAACATCCAAAGGGTCTTTCCAATGTGAAAAACGTAAAGCTCGCTTTGTAATTGTGGGTCATCTGAAAATTAACCAGTTTACAAAAAGTCATACTTGCAACGGTTTTTTTTAATTCAGGGCTCGGCCTGGCTGGCTTGTCTCGTGCYCGATTTTCAGAACTTTTTTCCTGAACTTTTTTTCAGAATTTTTTTCCGAAAAATTTTTGGTGTCAATTAAAAAAAACAAGTGTTTCTGTAAAGTCATTCTTGCCAAGAACAGGGTGTCGCTAAAAAGATTTTTTCACAGAAAATGAAAATTACGAAATTGCTTCAAATGTGGAAAACTCGGCCCGGTCCGGCCTGGCCAGACCAGGCCCAACCAGGCCTGTGGATCGGGCCCTGATTTTTCGAGTATACAAAAAATCTTAATTTTCACTTACCGGTTTTATAATAAACTCTGCTGTTGCAAACAGTATTCCCATTATGGAAAATGATAAAATTAGATATTTATATGCACCGAATACTTGTTTTGTATGGAACACGATGAGATATACCAGAAAAGAATTGACGACAAGAGTGGAGAAAAACCCGATTTCAGAAGCCAAAAACGACTTTTCAACCCATCGGATAGACGACATTTCTGAAAATGGGATGTTAGAAATCAGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>500 269 231</canonical_bands>
                <polymorphic_bands>731 269</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>475 269 231 25</canonical_bands>
                <polymorphic_bands>475 269 256</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAAAGCTCGCTTTGTAATTGT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATCTTTTTAGCGACACC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTAAAGCTCGCTTTGTAATTGTGGGTCATCTGAAAATTAACCAGTTTACAAAAAGTCATACTTGCAACGGTTTTTTTTAATTCAGGGCTCGGCCTGGCTGGCTTGTCTCGTGCCCGATTTTCAGAACTTTTTTCCTGAACTTTTTTTCAGAATTTTTTTCCGAAAAATTTTTGGTGTCAATTAAAAAAAACAAGTGTTTCTGTAAAGTCATTCTTGCCAAGAACAGGGTGTCGCTAAAAAGATTTTT</canonical_amplicon>
		<polymorphic_amplicon>GTAAAGCTCGCTTTGTAATTGTGGGTCATCTGAAAATTAACCAGTTTACAAAAAGTCATACTTGCAACGGTTTTTTTTAATTCAGGGCTCGGCCTGGCTGGCTTGTCTCGTGCYCGATTTTCAGAACTTTTTTCCTGAACTTTTTTTCAGAATTTTTTTCCGAAAAATTTTTGGTGTCAATTAAAAAAAACAAGTGTTTCTGTAAAGTCATTCTTGCCAAGAACAGGGTGTCGCTAAAAAGATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12262</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>153560</contig_pos>
        <strand>+</strand>
        <context>CTTGCAACGG[G/T]TTTTTTTAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGGGTCATCTGAAAATTAACCAGTTTACAAAAAGTCATACTTGCAACGG</left_flank>
        <right_flank>TTTTTTTAATTCAGGGCTCGGCCTGGCTGGCTTGTCTCGTGCCCGATTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATTCGGAATCGATTGAAGAAACTCAACCGGCGAGTACTGGAAACAAGATGATTGAACTGGAACACAGTTAGATCAAAACTCACTGAAAGATTGCCCAATATCGATAGACGAATTGCACGGCTAATAGGGATATGGTAGCTGCATAAGTGCTAGAGTAGGCAGCTGAAATTGAGATCTATTAGATTTGCAATTAGCCTTTTTACGTGTTAAATAAAACTTTTTTATCCAAATATCAGATTCTCGGTCAAAGTCTATGAAAACATTGCAGGTGGTATCTGGGGAAAAGTAGCCAGAAAAGTCTGGGTGCATAGGGACTCAAAAATTGGAAAAACTACAGTAACCCTTCAAAATATATTTTCAATCTTACCTAATAATATCATGGCAACTTCCTTTGAACATCCAAAGGGTCTTTCCAATGTGAAAAACGTAAAGCTCGCTTTGTAATTGTGGGTCATCTGAAAATTAACCAGTTTACAAAAAGTCATACTTGCAACGGTTTTTTTTAATTCAGGGCTCGGCCTGGCTGGCTTGTCTCGTGCCCGATTTTCAGAACTTTTTTCCTGAACTTTTTTTCAGAATTTTTTTCCGAAAAATTTTTGGTGTCAATTAAAAAAAACAAGTGTTTCTGTAAAGTCATTCTTGCCAAGAACAGGGTGTCGCTAAAAAGATTTTTTCACAGAAAATGAAAATTACGAAATTGCTTCAAATGTGGAAAACTCGGCCCGGTCCGGCCTGGCCAGACCAGGCCCAACCAGGCCTGTGGATCGGGCCCTGATTTTTCGAGTATACAAAAAATCTTAATTTTCACTTACCGGTTTTATAATAAACTCTGCTGTTGCAAACAGTATTCCCATTATGGAAAATGATAAAATTAGATATTTATATGCACCGAATACTTGTTTTGTATGGAACACGATGAGATATACCAGAAAAGAATTGACGACAAGAGTGGAGAAAAACCCGATTTCAGAAGCCAAAAACGACTTTTCAACCCATC</canonical>
            <polymorphic>AAAATTCGGAATCGATTGAAGAAACTCAACCGGCGAGTACTGGAAACAAGATGATTGAACTGGAACACAGTTAGATCAAAACTCACTGAAAGATTGCCCAATATCGATAGACGAATTGCACGGCTAATAGGGATATGGTAGCTGCATAAGTGCTAGAGTAGGCAGCTGAAATTGAGATCTATTAGATTTGCAATTAGCCTTTTTACGTGTTAAATAAAACTTTTTTATCCAAATATCAGATTCTCGGTCAAAGTCTATGAAAACATTGCAGGTGGTATCTGGGGAAAAGTAGCCAGAAAAGTCTGGGTGCATAGGGACTCAAAAATTGGAAAAACTACAGTAACCCTTCAAAATATATTTTCAATCTTACCTAATAATATCATGGCAACTTCCTTTGAACATCCAAAGGGTCTTTCCAATGTGAAAAACGTAAAGCTCGCTTTGTAATTGTGGGTCATCTGAAAATTAACCAGTTTACAAAAAGTCATACTTGCAACGGKTTTTTTTAATTCAGGGCTCGGCCTGGCTGGCTTGTCTCGTGCCCGATTTTCAGAACTTTTTTCCTGAACTTTTTTTCAGAATTTTTTTCCGAAAAATTTTTGGTGTCAATTAAAAAAAACAAGTGTTTCTGTAAAGTCATTCTTGCCAAGAACAGGGTGTCGCTAAAAAGATTTTTTCACAGAAAATGAAAATTACGAAATTGCTTCAAATGTGGAAAACTCGGCCCGGTCCGGCCTGGCCAGACCAGGCCCAACCAGGCCTGTGGATCGGGCCCTGATTTTTCGAGTATACAAAAAATCTTAATTTTCACTTACCGGTTTTATAATAAACTCTGCTGTTGCAAACAGTATTCCCATTATGGAAAATGATAAAATTAGATATTTATATGCACCGAATACTTGTTTTGTATGGAACACGATGAGATATACCAGAAAAGAATTGACGACAAGAGTGGAGAAAAACCCGATTTCAGAAGCCAAAAACGACTTTTCAACCCATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>349 270 159 153 69</canonical_bands>
                <polymorphic_bands>508 270 153 69</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAAAGCTCGCTTTGTAATTGT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATCTTTTTAGCGACACC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTAAAGCTCGCTTTGTAATTGTGGGTCATCTGAAAATTAACCAGTTTACAAAAAGTCATACTTGCAACGGTTTTTTTTAATTCAGGGCTCGGCCTGGCTGGCTTGTCTCGTGCCCGATTTTCAGAACTTTTTTCCTGAACTTTTTTTCAGAATTTTTTTCCGAAAAATTTTTGGTGTCAATTAAAAAAAACAAGTGTTTCTGTAAAGTCATTCTTGCCAAGAACAGGGTGTCGCTAAAAAGATTTTT</canonical_amplicon>
		<polymorphic_amplicon>GTAAAGCTCGCTTTGTAATTGTGGGTCATCTGAAAATTAACCAGTTTACAAAAAGTCATACTTGCAACGGKTTTTTTTAATTCAGGGCTCGGCCTGGCTGGCTTGTCTCGTGCCCGATTTTCAGAACTTTTTTCCTGAACTTTTTTTCAGAATTTTTTTCCGAAAAATTTTTGGTGTCAATTAAAAAAAACAAGTGTTTCTGTAAAGTCATTCTTGCCAAGAACAGGGTGTCGCTAAAAAGATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12263</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>153475</contig_pos>
        <strand>+</strand>
        <context>AAAGGGTCTT[G/T]CCAATGTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTTACCTAATAATATCATGGCAACTTCCTTTGAACATCCAAAGGGTCTT</left_flank>
        <right_flank>CCAATGTGAAAAACGTAAAGCTCGCTTTGTAATTGTGGGTCATCTGAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCGAGACCTTATCAGGCATTCCTAAAAAATATACCGATGAACTCCAGTCTACGCCAAACAACATCGCGATAGACACCCAAAACAAAATTCGGAATCGATTGAAGAAACTCAACCGGCGAGTACTGGAAACAAGATGATTGAACTGGAACACAGTTAGATCAAAACTCACTGAAAGATTGCCCAATATCGATAGACGAATTGCACGGCTAATAGGGATATGGTAGCTGCATAAGTGCTAGAGTAGGCAGCTGAAATTGAGATCTATTAGATTTGCAATTAGCCTTTTTACGTGTTAAATAAAACTTTTTTATCCAAATATCAGATTCTCGGTCAAAGTCTATGAAAACATTGCAGGTGGTATCTGGGGAAAAGTAGCCAGAAAAGTCTGGGTGCATAGGGACTCAAAAATTGGAAAAACTACAGTAACCCTTCAAAATATATTTTCAATCTTACCTAATAATATCATGGCAACTTCCTTTGAACATCCAAAGGGTCTTTCCAATGTGAAAAACGTAAAGCTCGCTTTGTAATTGTGGGTCATCTGAAAATTAACCAGTTTACAAAAAGTCATACTTGCAACGGTTTTTTTTAATTCAGGGCTCGGCCTGGCTGGCTTGTCTCGTGCCCGATTTTCAGAACTTTTTTCCTGAACTTTTTTTCAGAATTTTTTTCCGAAAAATTTTTGGTGTCAATTAAAAAAAACAAGTGTTTCTGTAAAGTCATTCTTGCCAAGAACAGGGTGTCGCTAAAAAGATTTTTTCACAGAAAATGAAAATTACGAAATTGCTTCAAATGTGGAAAACTCGGCCCGGTCCGGCCTGGCCAGACCAGGCCCAACCAGGCCTGTGGATCGGGCCCTGATTTTTCGAGTATACAAAAAATCTTAATTTTCACTTACCGGTTTTATAATAAACTCTGCTGTTGCAAACAGTATTCCCATTATGGAAAATGATAAAATTAGATATTTATATGCACCGAATACTTGTTTTGTATGGAAC</canonical>
            <polymorphic>CTCCGAGACCTTATCAGGCATTCCTAAAAAATATACCGATGAACTCCAGTCTACGCCAAACAACATCGCGATAGACACCCAAAACAAAATTCGGAATCGATTGAAGAAACTCAACCGGCGAGTACTGGAAACAAGATGATTGAACTGGAACACAGTTAGATCAAAACTCACTGAAAGATTGCCCAATATCGATAGACGAATTGCACGGCTAATAGGGATATGGTAGCTGCATAAGTGCTAGAGTAGGCAGCTGAAATTGAGATCTATTAGATTTGCAATTAGCCTTTTTACGTGTTAAATAAAACTTTTTTATCCAAATATCAGATTCTCGGTCAAAGTCTATGAAAACATTGCAGGTGGTATCTGGGGAAAAGTAGCCAGAAAAGTCTGGGTGCATAGGGACTCAAAAATTGGAAAAACTACAGTAACCCTTCAAAATATATTTTCAATCTTACCTAATAATATCATGGCAACTTCCTTTGAACATCCAAAGGGTCTTKCCAATGTGAAAAACGTAAAGCTCGCTTTGTAATTGTGGGTCATCTGAAAATTAACCAGTTTACAAAAAGTCATACTTGCAACGGTTTTTTTTAATTCAGGGCTCGGCCTGGCTGGCTTGTCTCGTGCCCGATTTTCAGAACTTTTTTCCTGAACTTTTTTTCAGAATTTTTTTCCGAAAAATTTTTGGTGTCAATTAAAAAAAACAAGTGTTTCTGTAAAGTCATTCTTGCCAAGAACAGGGTGTCGCTAAAAAGATTTTTTCACAGAAAATGAAAATTACGAAATTGCTTCAAATGTGGAAAACTCGGCCCGGTCCGGCCTGGCCAGACCAGGCCCAACCAGGCCTGTGGATCGGGCCCTGATTTTTCGAGTATACAAAAAATCTTAATTTTCACTTACCGGTTTTATAATAAACTCTGCTGTTGCAAACAGTATTCCCATTATGGAAAATGATAAAATTAGATATTTATATGCACCGAATACTTGTTTTGTATGGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATCAGATTCTCGGTCAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TGTAAACTGGTTAATTTTCAGATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATATCAGATTCTCGGTCAAAGTCTATGAAAACATTGCAGGTGGTATCTGGGGAAAAGTAGCCAGAAAAGTCTGGGTGCATAGGGACTCAAAAATTGGAAAAACTACAGTAACCCTTCAAAATATATTTTCAATCTTACCTAATAATATCATGGCAACTTCCTTTGAACATCCAAAGGGTCTTTCCAATGTGAAAAACGTAAAGCTCGCTTTGTAATTGTGGGTCATCTGAAAATTAACCAGTTTACA</canonical_amplicon>
		<polymorphic_amplicon>AATATCAGATTCTCGGTCAAAGTCTATGAAAACATTGCAGGTGGTATCTGGGGAAAAGTAGCCAGAAAAGTCTGGGTGCATAGGGACTCAAAAATTGGAAAAACTACAGTAACCCTTCAAAATATATTTTCAATCTTACCTAATAATATCATGGCAACTTCCTTTGAACATCCAAAGGGTCTTKCCAATGTGAAAAACGTAAAGCTCGCTTTGTAATTGTGGGTCATCTGAAAATTAACCAGTTTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12264</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>196119</contig_pos>
        <strand></strand>
        <context>TTGCACCTGC[G/A]TCCCTCACTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGAGGTTTTGGAGCTCTAAAATTTCAAAATATGATTTTTTTTGCACCTGC</left_flank>
        <right_flank>TCCCTCACTCTGGCAATCGTTTCCCAGCCAGAAAATCAGTCTCGAAAATC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGCTGACAGCGTCTTGCAAGCGAATGATGACGTTCTGAGAAAAATAGGTTAAAATGAACTTTTCTAAAAATTTACCTTGTCATTAGTAGTCATGCTCAATTGCACATTCTTCATGACAAAGTTATTATGGTTTTGGATCACTATCACATAGGAGTGGATGTTGCTAACAGTCATGTCGGATTGGCAGTAGTAGAGAAGGATTCGGACACCTTTGCTATCCAAGATCTGGACTGGGAGACGGTTTCCTGGAACAAATCGTTAAAATTTTTCCGATTCTCATTCATAATAAAAAGTATTACTCATGATAATGGAACTGGGATTCATGAACACCTTCTCCGGAATTACTTTTGGCGACAAACTAGTTGGCTCCGGTGACAATGGTGGGACCAAAACTTCCAATGCATCTAGAGTGATAGTCGTGGTGTTTGGTTTTAGCTCATTGAGAGTTGGAGGTTTTGGAGCTCTAAAATTTCAAAATATGATTTTTTTTGCACCTGCGTCCCTCACTCTGGCAATCGTTTCCCAGCCAGAAAATCAGTCTCGAAAATCGAGTCCCCACTAGCACGGGGGCTCGACGAGCTATTGCGATTTGAGACTGGAGTCATTTGTTGAACGGGAATGATCTGAAATGTTGTTTTGCTCTCTTTTGCTCCTTTGGGAAAAGTTTCCAGAAAACAAACCTTTGGCTCCTCCACAAACTCTGACTCAATCATGTTGTTGAGAAGACTCCCTTCCTGAAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAACATATTCATCAGTTCATTCAGCCATTTTTATCATTTTTGAAAGTCTGAAACTCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAACGGATCTAGATTGGAAACTATGCATTCATATACTTTTTTAAAGAATTCCCAAACTGCAGTTATTTTCCATTTACTGAAAAACACCCCGTTTTGGTCAGTTTTTGCACTAAAAA</canonical>
            <polymorphic>TCGCTGACAGCGTCTTGCAAGCGAATGATGACGTTCTGAGAAAAATAGGTTAAAATGAACTTTTCTAAAAATTTACCTTGTCATTAGTAGTCATGCTCAATTGCACATTCTTCATGACAAAGTTATTATGGTTTTGGATCACTATCACATAGGAGTGGATGTTGCTAACAGTCATGTCGGATTGGCAGTAGTAGAGAAGGATTCGGACACCTTTGCTATCCAAGATCTGGACTGGGAGACGGTTTCCTGGAACAAATCGTTAAAATTTTTCCGATTCTCATTCATAATAAAAAGTATTACTCATGATAATGGAACTGGGATTCATGAACACCTTCTCCGGAATTACTTTTGGCGACAAACTAGTTGGCTCCGGTGACAATGGTGGGACCAAAACTTCCAATGCATCTAGAGTGATAGTCGTGGTGTTTGGTTTTAGCTCATTGAGAGTTGGAGGTTTTGGAGCTCTAAAATTTCAAAATATGATTTTTTTTGCACCTGCRTCCCTCACTCTGGCAATCGTTTCCCAGCCAGAAAATCAGTCTCGAAAATCGAGTCCCCACTAGCACGGGGGCTCGACGAGCTATTGCGATTTGAGACTGGAGTCATTTGTTGAACGGGAATGATCTGAAATGTTGTTTTGCTCTCTTTTGCTCCTTTGGGAAAAGTTTCCAGAAAACAAACCTTTGGCTCCTCCACAAACTCTGACTCAATCATGTTGTTGAGAAGACTCCCTTCCTGAAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAACATATTCATCAGTTCATTCAGCCATTTTTATCATTTTTGAAAGTCTGAAACTCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAACGGATCTAGATTGGAAACTATGCATTCATATACTTTTTTAAAGAATTCCCAAACTGCAGTTATTTTCCATTTACTGAAAAACACCCCGTTTTGGTCAGTTTTTGCACTAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGCATCTAGAGTGATAGTCGT</pcr_primer_p1>
		<pcr_primer_p2>AAAGAGAGCAAAACAACATTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATGCATCTAGAGTGATAGTCGTGGTGTTTGGTTTTAGCTCATTGAGAGTTGGAGGTTTTGGAGCTCTAAAATTTCAAAATATGATTTTTTTTGCACCTGCGTCCCTCACTCTGGCAATCGTTTCCCAGCCAGAAAATCAGTCTCGAAAATCGAGTCCCCACTAGCACGGGGGCTCGACGAGCTATTGCGATTTGAGACTGGAGTCATTTGTTGAACGGGAATGATCTGAAATGTTGTTTTGCTCTCTTT</canonical_amplicon>
		<polymorphic_amplicon>AATGCATCTAGAGTGATAGTCGTGGTGTTTGGTTTTAGCTCATTGAGAGTTGGAGGTTTTGGAGCTCTAAAATTTCAAAATATGATTTTTTTTGCACCTGCRTCCCTCACTCTGGCAATCGTTTCCCAGCCAGAAAATCAGTCTCGAAAATCGAGTCCCCACTAGCACGGGGGCTCGACGAGCTATTGCGATTTGAGACTGGAGTCATTTGTTGAACGGGAATGATCTGAAATGTTGTTTTGCTCTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12265</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>196194</contig_pos>
        <strand>+</strand>
        <context>ACGGGGGCTC[A/G]ACGAGCTATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGCCAGAAAATCAGTCTCGAAAATCGAGTCCCCACTAGCACGGGGGCTC</left_flank>
        <right_flank>ACGAGCTATTGCGATTTGAGACTGGAGTCATTTGTTGAACGGGAATGATC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTGTCATTAGTAGTCATGCTCAATTGCACATTCTTCATGACAAAGTTATTATGGTTTTGGATCACTATCACATAGGAGTGGATGTTGCTAACAGTCATGTCGGATTGGCAGTAGTAGAGAAGGATTCGGACACCTTTGCTATCCAAGATCTGGACTGGGAGACGGTTTCCTGGAACAAATCGTTAAAATTTTTCCGATTCTCATTCATAATAAAAAGTATTACTCATGATAATGGAACTGGGATTCATGAACACCTTCTCCGGAATTACTTTTGGCGACAAACTAGTTGGCTCCGGTGACAATGGTGGGACCAAAACTTCCAATGCATCTAGAGTGATAGTCGTGGTGTTTGGTTTTAGCTCATTGAGAGTTGGAGGTTTTGGAGCTCTAAAATTTCAAAATATGATTTTTTTTGCACCTGCGTCCCTCACTCTGGCAATCGTTTCCCAGCCAGAAAATCAGTCTCGAAAATCGAGTCCCCACTAGCACGGGGGCTCGACGAGCTATTGCGATTTGAGACTGGAGTCATTTGTTGAACGGGAATGATCTGAAATGTTGTTTTGCTCTCTTTTGCTCCTTTGGGAAAAGTTTCCAGAAAACAAACCTTTGGCTCCTCCACAAACTCTGACTCAATCATGTTGTTGAGAAGACTCCCTTCCTGAAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAACATATTCATCAGTTCATTCAGCCATTTTTATCATTTTTGAAAGTCTGAAACTCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAACGGATCTAGATTGGAAACTATGCATTCATATACTTTTTTAAAGAATTCCCAAACTGCAGTTATTTTCCATTTACTGAAAAACACCCCGTTTTGGTCAGTTTTTGCACTAAAAACGTGAAAAAAGAGGTGTCTTTCAAAAATCGGTCAATAGGTGAAAAACTAGGAAATTTCAGAAAATTATGTGAATA</canonical>
            <polymorphic>CCTTGTCATTAGTAGTCATGCTCAATTGCACATTCTTCATGACAAAGTTATTATGGTTTTGGATCACTATCACATAGGAGTGGATGTTGCTAACAGTCATGTCGGATTGGCAGTAGTAGAGAAGGATTCGGACACCTTTGCTATCCAAGATCTGGACTGGGAGACGGTTTCCTGGAACAAATCGTTAAAATTTTTCCGATTCTCATTCATAATAAAAAGTATTACTCATGATAATGGAACTGGGATTCATGAACACCTTCTCCGGAATTACTTTTGGCGACAAACTAGTTGGCTCCGGTGACAATGGTGGGACCAAAACTTCCAATGCATCTAGAGTGATAGTCGTGGTGTTTGGTTTTAGCTCATTGAGAGTTGGAGGTTTTGGAGCTCTAAAATTTCAAAATATGATTTTTTTTGCACCTGCGTCCCTCACTCTGGCAATCGTTTCCCAGCCAGAAAATCAGTCTCGAAAATCGAGTCCCCACTAGCACGGGGGCTCRACGAGCTATTGCGATTTGAGACTGGAGTCATTTGTTGAACGGGAATGATCTGAAATGTTGTTTTGCTCTCTTTTGCTCCTTTGGGAAAAGTTTCCAGAAAACAAACCTTTGGCTCCTCCACAAACTCTGACTCAATCATGTTGTTGAGAAGACTCCCTTCCTGAAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAACATATTCATCAGTTCATTCAGCCATTTTTATCATTTTTGAAAGTCTGAAACTCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAACGGATCTAGATTGGAAACTATGCATTCATATACTTTTTTAAAGAATTCCCAAACTGCAGTTATTTTCCATTTACTGAAAAACACCCCGTTTTGGTCAGTTTTTGCACTAAAAACGTGAAAAAAGAGGTGTCTTTCAAAAATCGGTCAATAGGTGAAAAACTAGGAAATTTCAGAAAATTATGTGAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 468 24 7</canonical_bands>
                <polymorphic_bands>525 468 7</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGCATCTAGAGTGATAGTCGT</pcr_primer_p1>
		<pcr_primer_p2>AAAGAGAGCAAAACAACATTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATGCATCTAGAGTGATAGTCGTGGTGTTTGGTTTTAGCTCATTGAGAGTTGGAGGTTTTGGAGCTCTAAAATTTCAAAATATGATTTTTTTTGCACCTGCGTCCCTCACTCTGGCAATCGTTTCCCAGCCAGAAAATCAGTCTCGAAAATCGAGTCCCCACTAGCACGGGGGCTCGACGAGCTATTGCGATTTGAGACTGGAGTCATTTGTTGAACGGGAATGATCTGAAATGTTGTTTTGCTCTCTTT</canonical_amplicon>
		<polymorphic_amplicon>AATGCATCTAGAGTGATAGTCGTGGTGTTTGGTTTTAGCTCATTGAGAGTTGGAGGTTTTGGAGCTCTAAAATTTCAAAATATGATTTTTTTTGCACCTGCGTCCCTCACTCTGGCAATCGTTTCCCAGCCAGAAAATCAGTCTCGAAAATCGAGTCCCCACTAGCACGGGGGCTCRACGAGCTATTGCGATTTGAGACTGGAGTCATTTGTTGAACGGGAATGATCTGAAATGTTGTTTTGCTCTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12266</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>196357</contig_pos>
        <strand>+</strand>
        <context>CTCCCTTCCT[A/G]AAATAAAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCCTCCACAAACTCTGACTCAATCATGTTGTTGAGAAGACTCCCTTCCT</left_flank>
        <right_flank>AAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGGTTTCCTGGAACAAATCGTTAAAATTTTTCCGATTCTCATTCATAATAAAAAGTATTACTCATGATAATGGAACTGGGATTCATGAACACCTTCTCCGGAATTACTTTTGGCGACAAACTAGTTGGCTCCGGTGACAATGGTGGGACCAAAACTTCCAATGCATCTAGAGTGATAGTCGTGGTGTTTGGTTTTAGCTCATTGAGAGTTGGAGGTTTTGGAGCTCTAAAATTTCAAAATATGATTTTTTTTGCACCTGCGTCCCTCACTCTGGCAATCGTTTCCCAGCCAGAAAATCAGTCTCGAAAATCGAGTCCCCACTAGCACGGGGGCTCGACGAGCTATTGCGATTTGAGACTGGAGTCATTTGTTGAACGGGAATGATCTGAAATGTTGTTTTGCTCTCTTTTGCTCCTTTGGGAAAAGTTTCCAGAAAACAAACCTTTGGCTCCTCCACAAACTCTGACTCAATCATGTTGTTGAGAAGACTCCCTTCCTGAAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAACATATTCATCAGTTCATTCAGCCATTTTTATCATTTTTGAAAGTCTGAAACTCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAACGGATCTAGATTGGAAACTATGCATTCATATACTTTTTTAAAGAATTCCCAAACTGCAGTTATTTTCCATTTACTGAAAAACACCCCGTTTTGGTCAGTTTTTGCACTAAAAACGTGAAAAAAGAGGTGTCTTTCAAAAATCGGTCAATAGGTGAAAAACTAGGAAATTTCAGAAAATTATGTGAATACAAAATTTTCAATCTAGGTTTGTTTCACACTTTCTCTCCTGAAAACTGTTCAAATAGCGAAAAATCAACTGAAACATATGTTTTTGTAGTTTTTATTGAACGATACTGTAGGTTTGAAAAAATATAAATTTATTACCAAATCACGTGGATCACAAAATCCGTT</canonical>
            <polymorphic>ACGGTTTCCTGGAACAAATCGTTAAAATTTTTCCGATTCTCATTCATAATAAAAAGTATTACTCATGATAATGGAACTGGGATTCATGAACACCTTCTCCGGAATTACTTTTGGCGACAAACTAGTTGGCTCCGGTGACAATGGTGGGACCAAAACTTCCAATGCATCTAGAGTGATAGTCGTGGTGTTTGGTTTTAGCTCATTGAGAGTTGGAGGTTTTGGAGCTCTAAAATTTCAAAATATGATTTTTTTTGCACCTGCGTCCCTCACTCTGGCAATCGTTTCCCAGCCAGAAAATCAGTCTCGAAAATCGAGTCCCCACTAGCACGGGGGCTCGACGAGCTATTGCGATTTGAGACTGGAGTCATTTGTTGAACGGGAATGATCTGAAATGTTGTTTTGCTCTCTTTTGCTCCTTTGGGAAAAGTTTCCAGAAAACAAACCTTTGGCTCCTCCACAAACTCTGACTCAATCATGTTGTTGAGAAGACTCCCTTCCTRAAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAACATATTCATCAGTTCATTCAGCCATTTTTATCATTTTTGAAAGTCTGAAACTCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAACGGATCTAGATTGGAAACTATGCATTCATATACTTTTTTAAAGAATTCCCAAACTGCAGTTATTTTCCATTTACTGAAAAACACCCCGTTTTGGTCAGTTTTTGCACTAAAAACGTGAAAAAAGAGGTGTCTTTCAAAAATCGGTCAATAGGTGAAAAACTAGGAAATTTCAGAAAATTATGTGAATACAAAATTTTCAATCTAGGTTTGTTTCACACTTTCTCTCCTGAAAACTGTTCAAATAGCGAAAAATCAACTGAAACATATGTTTTTGTAGTTTTTATTGAACGATACTGTAGGTTTGAAAAAATATAAATTTATTACCAAATCACGTGGATCACAAAATCCGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>220 135 128 125 95 69 66 64 46 21 17 14</canonical_bands>
                <polymorphic_bands>220 135 128 125 95 83 69 64 46 21 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTCCACAAACTCTGACTC</pcr_primer_p1>
		<pcr_primer_p2>ATCCACGTGATTTGGTAATAA</pcr_primer_p2>
		<pcr_amplicon_size>537</pcr_amplicon_size>
		<canonical_amplicon>TCCTCCACAAACTCTGACTCAATCATGTTGTTGAGAAGACTCCCTTCCTGAAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAACATATTCATCAGTTCATTCAGCCATTTTTATCATTTTTGAAAGTCTGAAACTCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAACGGATCTAGATTGGAAACTATGCATTCATATACTTTTTTAAAGAATTCCCAAACTGCAGTTATTTTCCATTTACTGAAAAACACCCCGTTTTGGTCAGTTTTTGCACTAAAAACGTGAAAAAAGAGGTGTCTTTCAAAAATCGGTCAATAGGTGAAAAACTAGGAAATTTCAGAAAATTATGTGAATACAAAATTTTCAATCTAGGTTTGTTTCACACTTTCTCTCCTGAAAACTGTTCAAATAGCGAAAAATCAACTGAAACATATGTTTTTGTAGTTTTTATTGAACGATACTGTAGGTTTGAAAAAATATAAATTTATTACCAAATCACGTGGAT</canonical_amplicon>
		<polymorphic_amplicon>TCCTCCACAAACTCTGACTCAATCATGTTGTTGAGAAGACTCCCTTCCTRAAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAACATATTCATCAGTTCATTCAGCCATTTTTATCATTTTTGAAAGTCTGAAACTCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAACGGATCTAGATTGGAAACTATGCATTCATATACTTTTTTAAAGAATTCCCAAACTGCAGTTATTTTCCATTTACTGAAAAACACCCCGTTTTGGTCAGTTTTTGCACTAAAAACGTGAAAAAAGAGGTGTCTTTCAAAAATCGGTCAATAGGTGAAAAACTAGGAAATTTCAGAAAATTATGTGAATACAAAATTTTCAATCTAGGTTTGTTTCACACTTTCTCTCCTGAAAACTGTTCAAATAGCGAAAAATCAACTGAAACATATGTTTTTGTAGTTTTTATTGAACGATACTGTAGGTTTGAAAAAATATAAATTTATTACCAAATCACGTGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12267</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>198168</contig_pos>
        <strand>+</strand>
        <context>TGTAGCCCTA[C/T]TTGGATTATC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATATAATGTCCCTCACAAATTGTAGTCCTCCTACAGCTATGTAGCCCTA</left_flank>
        <right_flank>TTGGATTATCCCTTTTTTATCAATATCACAAGTCATCTCCTGACTTACTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATTAAGAGTGGTCAATTCGAATTTATGGATTACTGTACTTTCAACATTTTAAGAGAAACTGGTTTTTTGCGCCTATGTTCCAAACATCCTACTTTTTTGGGTTTCAAGGAACTTCAAACGTATTCGATAACAAGGATCAAGTAATGTTTTCCCAGCTTTCTGTGATGATTCACAATATACGATTTGAAATTTCTGTATTTCTGAGCAATGGAATACCAGGGGATTACTGTAGTACCATACTGGAATCTAGTGTTTTCTGCTTTGAAGATCCTCAAACATATCATTGGACAGTCACTTACACTCTCCACGAGACTTTTGATCAGATTGTTCGCTGTCTGTAGATCCTCTGGACGGTTGCTGTTCAACAAAGACTTCAACAAAATTGCTTGCTCCTCATTAGCAAACACTGACGCACGTGCAGGTGGAACTGAAACTCACATATTTTTGTATATAATGTCCCTCACAAATTGTAGTCCTCCTACAGCTATGTAGCCCTATTTGGATTATCCCTTTTTTATCAATATCACAAGTCATCTCCTGACTTACTGGCAAACACTGGAACTTCGGTCTCTTTCACCTGCGGATCCTCGGTGATAATCTTGCTGGCTTTCAATGACTCATAAACCTGCTTGTACTTCTCTATGTGCTTAATGGATAGCTGCCAGATGAACAACAATTTGATTATTTCCGTTTTCAGCGCGTCACTTGTAAATTTCCCATTGTATTTGGGAGCAATCAGTCTGACAAGCTCGTTTAGGAATTTGTAACGACCACATCGCTCATGAACCTTCTCTCCACCATTTCGCACCAAATAGTCGAGAGCCTACAAGTTATTCATGAATTCCCGATTTGTTTCAATGCTCTTACATGGATCGTAAGCATCGCTTCCTCTTGGCAAGGGCTCGATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATC</canonical>
            <polymorphic>GGATTAAGAGTGGTCAATTCGAATTTATGGATTACTGTACTTTCAACATTTTAAGAGAAACTGGTTTTTTGCGCCTATGTTCCAAACATCCTACTTTTTTGGGTTTCAAGGAACTTCAAACGTATTCGATAACAAGGATCAAGTAATGTTTTCCCAGCTTTCTGTGATGATTCACAATATACGATTTGAAATTTCTGTATTTCTGAGCAATGGAATACCAGGGGATTACTGTAGTACCATACTGGAATCTAGTGTTTTCTGCTTTGAAGATCCTCAAACATATCATTGGACAGTCACTTACACTCTCCACGAGACTTTTGATCAGATTGTTCGCTGTCTGTAGATCCTCTGGACGGTTGCTGTTCAACAAAGACTTCAACAAAATTGCTTGCTCCTCATTAGCAAACACTGACGCACGTGCAGGTGGAACTGAAACTCACATATTTTTGTATATAATGTCCCTCACAAATTGTAGTCCTCCTACAGCTATGTAGCCCTAYTTGGATTATCCCTTTTTTATCAATATCACAAGTCATCTCCTGACTTACTGGCAAACACTGGAACTTCGGTCTCTTTCACCTGCGGATCCTCGGTGATAATCTTGCTGGCTTTCAATGACTCATAAACCTGCTTGTACTTCTCTATGTGCTTAATGGATAGCTGCCAGATGAACAACAATTTGATTATTTCCGTTTTCAGCGCGTCACTTGTAAATTTCCCATTGTATTTGGGAGCAATCAGTCTGACAAGCTCGTTTAGGAATTTGTAACGACCACATCGCTCATGAACCTTCTCTCCACCATTTCGCACCAAATAGTCGAGAGCCTACAAGTTATTCATGAATTCCCGATTTGTTTCAATGCTCTTACATGGATCGTAAGCATCGCTTCCTCTTGGCAAGGGCTCGATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTATATAATGTCCCTCACA</pcr_primer_p1>
		<pcr_primer_p2>GGAAATAATCAAATTGTTGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTATATAATGTCCCTCACAAATTGTAGTCCTCCTACAGCTATGTAGCCCTATTTGGATTATCCCTTTTTTATCAATATCACAAGTCATCTCCTGACTTACTGGCAAACACTGGAACTTCGGTCTCTTTCACCTGCGGATCCTCGGTGATAATCTTGCTGGCTTTCAATGACTCATAAACCTGCTTGTACTTCTCTATGTGCTTAATGGATAGCTGCCAGATGAACAACAATTTGATTATTTCC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTATATAATGTCCCTCACAAATTGTAGTCCTCCTACAGCTATGTAGCCCTAYTTGGATTATCCCTTTTTTATCAATATCACAAGTCATCTCCTGACTTACTGGCAAACACTGGAACTTCGGTCTCTTTCACCTGCGGATCCTCGGTGATAATCTTGCTGGCTTTCAATGACTCATAAACCTGCTTGTACTTCTCTATGTGCTTAATGGATAGCTGCCAGATGAACAACAATTTGATTATTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12268</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>198380</contig_pos>
        <strand>+</strand>
        <context>CGTCACTTGT[A/C]AATTTCCCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCCAGATGAACAACAATTTGATTATTTCCGTTTTCAGCGCGTCACTTGT</left_flank>
        <right_flank>AATTTCCCATTGTATTTGGGAGCAATCAGTCTGACAAGCTCGTTTAGGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATACCAGGGGATTACTGTAGTACCATACTGGAATCTAGTGTTTTCTGCTTTGAAGATCCTCAAACATATCATTGGACAGTCACTTACACTCTCCACGAGACTTTTGATCAGATTGTTCGCTGTCTGTAGATCCTCTGGACGGTTGCTGTTCAACAAAGACTTCAACAAAATTGCTTGCTCCTCATTAGCAAACACTGACGCACGTGCAGGTGGAACTGAAACTCACATATTTTTGTATATAATGTCCCTCACAAATTGTAGTCCTCCTACAGCTATGTAGCCCTATTTGGATTATCCCTTTTTTATCAATATCACAAGTCATCTCCTGACTTACTGGCAAACACTGGAACTTCGGTCTCTTTCACCTGCGGATCCTCGGTGATAATCTTGCTGGCTTTCAATGACTCATAAACCTGCTTGTACTTCTCTATGTGCTTAATGGATAGCTGCCAGATGAACAACAATTTGATTATTTCCGTTTTCAGCGCGTCACTTGTAAATTTCCCATTGTATTTGGGAGCAATCAGTCTGACAAGCTCGTTTAGGAATTTGTAACGACCACATCGCTCATGAACCTTCTCTCCACCATTTCGCACCAAATAGTCGAGAGCCTACAAGTTATTCATGAATTCCCGATTTGTTTCAATGCTCTTACATGGATCGTAAGCATCGCTTCCTCTTGGCAAGGGCTCGATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAATTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATGAATACTCTCAATGATGAAATCAAGCGCTTTTATTCTCTCATCCTCAGTCACGAAT</canonical>
            <polymorphic>GAATACCAGGGGATTACTGTAGTACCATACTGGAATCTAGTGTTTTCTGCTTTGAAGATCCTCAAACATATCATTGGACAGTCACTTACACTCTCCACGAGACTTTTGATCAGATTGTTCGCTGTCTGTAGATCCTCTGGACGGTTGCTGTTCAACAAAGACTTCAACAAAATTGCTTGCTCCTCATTAGCAAACACTGACGCACGTGCAGGTGGAACTGAAACTCACATATTTTTGTATATAATGTCCCTCACAAATTGTAGTCCTCCTACAGCTATGTAGCCCTATTTGGATTATCCCTTTTTTATCAATATCACAAGTCATCTCCTGACTTACTGGCAAACACTGGAACTTCGGTCTCTTTCACCTGCGGATCCTCGGTGATAATCTTGCTGGCTTTCAATGACTCATAAACCTGCTTGTACTTCTCTATGTGCTTAATGGATAGCTGCCAGATGAACAACAATTTGATTATTTCCGTTTTCAGCGCGTCACTTGTMAATTTCCCATTGTATTTGGGAGCAATCAGTCTGACAAGCTCGTTTAGGAATTTGTAACGACCACATCGCTCATGAACCTTCTCTCCACCATTTCGCACCAAATAGTCGAGAGCCTACAAGTTATTCATGAATTCCCGATTTGTTTCAATGCTCTTACATGGATCGTAAGCATCGCTTCCTCTTGGCAAGGGCTCGATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAATTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATGAATACTCTCAATGATGAAATCAAGCGCTTTTATTCTCTCATCCTCAGTCACGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>500 197 174 81 48</canonical_bands>
                <polymorphic_bands>548 197 174 81</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCTGCTTGTACTTCTCTATGTG</pcr_primer_p1>
		<pcr_primer_p2>ATGTAAGAGCATTGAAACAAATC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACCTGCTTGTACTTCTCTATGTGCTTAATGGATAGCTGCCAGATGAACAACAATTTGATTATTTCCGTTTTCAGCGCGTCACTTGTAAATTTCCCATTGTATTTGGGAGCAATCAGTCTGACAAGCTCGTTTAGGAATTTGTAACGACCACATCGCTCATGAACCTTCTCTCCACCATTTCGCACCAAATAGTCGAGAGCCTACAAGTTATTCATGAATTCCCGATTTGTTTCAATGCTCTTACAT</canonical_amplicon>
		<polymorphic_amplicon>ACCTGCTTGTACTTCTCTATGTGCTTAATGGATAGCTGCCAGATGAACAACAATTTGATTATTTCCGTTTTCAGCGCGTCACTTGTMAATTTCCCATTGTATTTGGGAGCAATCAGTCTGACAAGCTCGTTTAGGAATTTGTAACGACCACATCGCTCATGAACCTTCTCTCCACCATTTCGCACCAAATAGTCGAGAGCCTACAAGTTATTCATGAATTCCCGATTTGTTTCAATGCTCTTACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12269</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>198644</contig_pos>
        <strand>+</strand>
        <context>AGGCTATCAC[C/T]TAATGTGMCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCAC</left_flank>
        <right_flank>TAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTCCTACAGCTATGTAGCCCTATTTGGATTATCCCTTTTTTATCAATATCACAAGTCATCTCCTGACTTACTGGCAAACACTGGAACTTCGGTCTCTTTCACCTGCGGATCCTCGGTGATAATCTTGCTGGCTTTCAATGACTCATAAACCTGCTTGTACTTCTCTATGTGCTTAATGGATAGCTGCCAGATGAACAACAATTTGATTATTTCCGTTTTCAGCGCGTCACTTGTAAATTTCCCATTGTATTTGGGAGCAATCAGTCTGACAAGCTCGTTTAGGAATTTGTAACGACCACATCGCTCATGAACCTTCTCTCCACCATTTCGCACCAAATAGTCGAGAGCCTACAAGTTATTCATGAATTCCCGATTTGTTTCAATGCTCTTACATGGATCGTAAGCATCGCTTCCTCTTGGCAAGGGCTCGATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAATTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATGAATACTCTCAATGATGAAATCAAGCGCTTTTATTCTCTCATCCTCAGTCACGAATCTGTCTGTGGCTTTGCCTGAAAGAAATCATCAATCCCACTAGACCCATTTATTGAATATGTCACTTACAAACCCAGTAGTCGATGGCACGCGTCGGTTCGACCACTTGCTCCGTCATAGCAGCGGCTCAAACGTTCAAGAGAGGCCGACAAAAAAGTAGAAGAAAGAAACTCGACGTATTCAGCCACTAAAAGCCCCACAAGAAGTAGAAGAAGGGGGGACGGGCTCAAAATGAAGCCCGGGGCTAGAATAGGAGAGAGAGAGA</canonical>
            <polymorphic>CCTCCTACAGCTATGTAGCCCTATTTGGATTATCCCTTTTTTATCAATATCACAAGTCATCTCCTGACTTACTGGCAAACACTGGAACTTCGGTCTCTTTCACCTGCGGATCCTCGGTGATAATCTTGCTGGCTTTCAATGACTCATAAACCTGCTTGTACTTCTCTATGTGCTTAATGGATAGCTGCCAGATGAACAACAATTTGATTATTTCCGTTTTCAGCGCGTCACTTGTAAATTTCCCATTGTATTTGGGAGCAATCAGTCTGACAAGCTCGTTTAGGAATTTGTAACGACCACATCGCTCATGAACCTTCTCTCCACCATTTCGCACCAAATAGTCGAGAGCCTACAAGTTATTCATGAATTCCCGATTTGTTTCAATGCTCTTACATGGATCGTAAGCATCGCTTCCTCTTGGCAAGGGCTCGATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACYTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAATTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATGAATACTCTCAATGATGAAATCAAGCGCTTTTATTCTCTCATCCTCAGTCACGAATCTGTCTGTGGCTTTGCCTGAAAGAAATCATCAATCCCACTAGACCCATTTATTGAATATGTCACTTACAAACCCAGTAGTCGATGGCACGCGTCGGTTCGACCACTTGCTCCGTCATAGCAGCGGCTCAAACGTTCAAGAGAGGCCGACAAAAAAGTAGAAGAAAGAAACTCGACGTATTCAGCCACTAAAAGCCCCACAAGAAGTAGAAGAAGGGGGGACGGGCTCAAAATGAAGCCCGGGGCTAGAATAGGAGAGAGAGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>419 326 174 38 18 15 10</canonical_bands>
                <polymorphic_bands>419 364 174 18 15 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAGTTTGTGCGAAAACAAGTC</pcr_primer_p1>
		<pcr_primer_p2>CATAAGGAAGTAGGTTTGGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAATTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATG</canonical_amplicon>
		<polymorphic_amplicon>ATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACYTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAATTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12270</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>198652</contig_pos>
        <strand>+</strand>
        <context>ACYTAATGTG[A/C]CTCTGCATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTG</left_flank>
        <right_flank>CTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTATGTAGCCCTATTTGGATTATCCCTTTTTTATCAATATCACAAGTCATCTCCTGACTTACTGGCAAACACTGGAACTTCGGTCTCTTTCACCTGCGGATCCTCGGTGATAATCTTGCTGGCTTTCAATGACTCATAAACCTGCTTGTACTTCTCTATGTGCTTAATGGATAGCTGCCAGATGAACAACAATTTGATTATTTCCGTTTTCAGCGCGTCACTTGTAAATTTCCCATTGTATTTGGGAGCAATCAGTCTGACAAGCTCGTTTAGGAATTTGTAACGACCACATCGCTCATGAACCTTCTCTCCACCATTTCGCACCAAATAGTCGAGAGCCTACAAGTTATTCATGAATTCCCGATTTGTTTCAATGCTCTTACATGGATCGTAAGCATCGCTTCCTCTTGGCAAGGGCTCGATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAATTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATGAATACTCTCAATGATGAAATCAAGCGCTTTTATTCTCTCATCCTCAGTCACGAATCTGTCTGTGGCTTTGCCTGAAAGAAATCATCAATCCCACTAGACCCATTTATTGAATATGTCACTTACAAACCCAGTAGTCGATGGCACGCGTCGGTTCGACCACTTGCTCCGTCATAGCAGCGGCTCAAACGTTCAAGAGAGGCCGACAAAAAAGTAGAAGAAAGAAACTCGACGTATTCAGCCACTAAAAGCCCCACAAGAAGTAGAAGAAGGGGGGACGGGCTCAAAATGAAGCCCGGGGCTAGAATAGGAGAGAGAGAGAGAGGCGGG</canonical>
            <polymorphic>AGCTATGTAGCCCTATTTGGATTATCCCTTTTTTATCAATATCACAAGTCATCTCCTGACTTACTGGCAAACACTGGAACTTCGGTCTCTTTCACCTGCGGATCCTCGGTGATAATCTTGCTGGCTTTCAATGACTCATAAACCTGCTTGTACTTCTCTATGTGCTTAATGGATAGCTGCCAGATGAACAACAATTTGATTATTTCCGTTTTCAGCGCGTCACTTGTAAATTTCCCATTGTATTTGGGAGCAATCAGTCTGACAAGCTCGTTTAGGAATTTGTAACGACCACATCGCTCATGAACCTTCTCTCCACCATTTCGCACCAAATAGTCGAGAGCCTACAAGTTATTCATGAATTCCCGATTTGTTTCAATGCTCTTACATGGATCGTAAGCATCGCTTCCTCTTGGCAAGGGCTCGATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGMCTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAATTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATGAATACTCTCAATGATGAAATCAAGCGCTTTTATTCTCTCATCCTCAGTCACGAATCTGTCTGTGGCTTTGCCTGAAAGAAATCATCAATCCCACTAGACCCATTTATTGAATATGTCACTTACAAACCCAGTAGTCGATGGCACGCGTCGGTTCGACCACTTGCTCCGTCATAGCAGCGGCTCAAACGTTCAAGAGAGGCCGACAAAAAAGTAGAAGAAAGAAACTCGACGTATTCAGCCACTAAAAGCCCCACAAGAAGTAGAAGAAGGGGGGACGGGCTCAAAATGAAGCCCGGGGCTAGAATAGGAGAGAGAGAGAGAGGCGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>366 275 226 133</canonical_bands>
                <polymorphic_bands>592 275 133</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>223 218 215 213 68 63</canonical_bands>
                <polymorphic_bands>438 218 213 68 63</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>278 223 218 213 68</canonical_bands>
                <polymorphic_bands>501 218 213 68</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAGTTTGTGCGAAAACAAGTC</pcr_primer_p1>
		<pcr_primer_p2>CATAAGGAAGTAGGTTTGGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAATTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATG</canonical_amplicon>
		<polymorphic_amplicon>ATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGMCTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAATTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12271</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>198692</contig_pos>
        <strand>+</strand>
        <context>TTAATCAAAT[C/G]ACAAGGCTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAAT</left_flank>
        <right_flank>ACAAGGCTTAATGGAATTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCACAAGTCATCTCCTGACTTACTGGCAAACACTGGAACTTCGGTCTCTTTCACCTGCGGATCCTCGGTGATAATCTTGCTGGCTTTCAATGACTCATAAACCTGCTTGTACTTCTCTATGTGCTTAATGGATAGCTGCCAGATGAACAACAATTTGATTATTTCCGTTTTCAGCGCGTCACTTGTAAATTTCCCATTGTATTTGGGAGCAATCAGTCTGACAAGCTCGTTTAGGAATTTGTAACGACCACATCGCTCATGAACCTTCTCTCCACCATTTCGCACCAAATAGTCGAGAGCCTACAAGTTATTCATGAATTCCCGATTTGTTTCAATGCTCTTACATGGATCGTAAGCATCGCTTCCTCTTGGCAAGGGCTCGATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAATTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATGAATACTCTCAATGATGAAATCAAGCGCTTTTATTCTCTCATCCTCAGTCACGAATCTGTCTGTGGCTTTGCCTGAAAGAAATCATCAATCCCACTAGACCCATTTATTGAATATGTCACTTACAAACCCAGTAGTCGATGGCACGCGTCGGTTCGACCACTTGCTCCGTCATAGCAGCGGCTCAAACGTTCAAGAGAGGCCGACAAAAAAGTAGAAGAAAGAAACTCGACGTATTCAGCCACTAAAAGCCCCACAAGAAGTAGAAGAAGGGGGGACGGGCTCAAAATGAAGCCCGGGGCTAGAATAGGAGAGAGAGAGAGAGGCGGGTGCTCCTCGTCGCTCTATCGATCTGCGTCTTGTTTCCCTC</canonical>
            <polymorphic>ATCACAAGTCATCTCCTGACTTACTGGCAAACACTGGAACTTCGGTCTCTTTCACCTGCGGATCCTCGGTGATAATCTTGCTGGCTTTCAATGACTCATAAACCTGCTTGTACTTCTCTATGTGCTTAATGGATAGCTGCCAGATGAACAACAATTTGATTATTTCCGTTTTCAGCGCGTCACTTGTAAATTTCCCATTGTATTTGGGAGCAATCAGTCTGACAAGCTCGTTTAGGAATTTGTAACGACCACATCGCTCATGAACCTTCTCTCCACCATTTCGCACCAAATAGTCGAGAGCCTACAAGTTATTCATGAATTCCCGATTTGTTTCAATGCTCTTACATGGATCGTAAGCATCGCTTCCTCTTGGCAAGGGCTCGATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATSACAAGGCTTAATGGAATTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATGAATACTCTCAATGATGAAATCAAGCGCTTTTATTCTCTCATCCTCAGTCACGAATCTGTCTGTGGCTTTGCCTGAAAGAAATCATCAATCCCACTAGACCCATTTATTGAATATGTCACTTACAAACCCAGTAGTCGATGGCACGCGTCGGTTCGACCACTTGCTCCGTCATAGCAGCGGCTCAAACGTTCAAGAGAGGCCGACAAAAAAGTAGAAGAAAGAAACTCGACGTATTCAGCCACTAAAAGCCCCACAAGAAGTAGAAGAAGGGGGGACGGGCTCAAAATGAAGCCCGGGGCTAGAATAGGAGAGAGAGAGAGAGGCGGGTGCTCCTCGTCGCTCTATCGATCTGCGTCTTGTTTCCCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGTTTGTGCGAAAACAAGTC</pcr_primer_p1>
		<pcr_primer_p2>CATAAGGAAGTAGGTTTGGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAATTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATG</canonical_amplicon>
		<polymorphic_amplicon>ATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATSACAAGGCTTAATGGAATTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12272</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>198711</contig_pos>
        <strand>+</strand>
        <context>TAATGGARKT[C/T]AAAGAACTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAATT</left_flank>
        <right_flank>AAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTC</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTACTGGCAAACACTGGAACTTCGGTCTCTTTCACCTGCGGATCCTCGGTGATAATCTTGCTGGCTTTCAATGACTCATAAACCTGCTTGTACTTCTCTATGTGCTTAATGGATAGCTGCCAGATGAACAACAATTTGATTATTTCCGTTTTCAGCGCGTCACTTGTAAATTTCCCATTGTATTTGGGAGCAATCAGTCTGACAAGCTCGTTTAGGAATTTGTAACGACCACATCGCTCATGAACCTTCTCTCCACCATTTCGCACCAAATAGTCGAGAGCCTACAAGTTATTCATGAATTCCCGATTTGTTTCAATGCTCTTACATGGATCGTAAGCATCGCTTCCTCTTGGCAAGGGCTCGATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAATTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATGAATACTCTCAATGATGAAATCAAGCGCTTTTATTCTCTCATCCTCAGTCACGAATCTGTCTGTGGCTTTGCCTGAAAGAAATCATCAATCCCACTAGACCCATTTATTGAATATGTCACTTACAAACCCAGTAGTCGATGGCACGCGTCGGTTCGACCACTTGCTCCGTCATAGCAGCGGCTCAAACGTTCAAGAGAGGCCGACAAAAAAGTAGAAGAAAGAAACTCGACGTATTCAGCCACTAAAAGCCCCACAAGAAGTAGAAGAAGGGGGGACGGGCTCAAAATGAAGCCCGGGGCTAGAATAGGAGAGAGAGAGAGAGGCGGGTGCTCCTCGTCGCTCTATCGATCTGCGTCTTGTTTCCCTCTCAACTCATCATCTTGCTC</canonical>
            <polymorphic>CTTACTGGCAAACACTGGAACTTCGGTCTCTTTCACCTGCGGATCCTCGGTGATAATCTTGCTGGCTTTCAATGACTCATAAACCTGCTTGTACTTCTCTATGTGCTTAATGGATAGCTGCCAGATGAACAACAATTTGATTATTTCCGTTTTCAGCGCGTCACTTGTAAATTTCCCATTGTATTTGGGAGCAATCAGTCTGACAAGCTCGTTTAGGAATTTGTAACGACCACATCGCTCATGAACCTTCTCTCCACCATTTCGCACCAAATAGTCGAGAGCCTACAAGTTATTCATGAATTCCCGATTTGTTTCAATGCTCTTACATGGATCGTAAGCATCGCTTCCTCTTGGCAAGGGCTCGATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAATTYAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATGAATACTCTCAATGATGAAATCAAGCGCTTTTATTCTCTCATCCTCAGTCACGAATCTGTCTGTGGCTTTGCCTGAAAGAAATCATCAATCCCACTAGACCCATTTATTGAATATGTCACTTACAAACCCAGTAGTCGATGGCACGCGTCGGTTCGACCACTTGCTCCGTCATAGCAGCGGCTCAAACGTTCAAGAGAGGCCGACAAAAAAGTAGAAGAAAGAAACTCGACGTATTCAGCCACTAAAAGCCCCACAAGAAGTAGAAGAAGGGGGGACGGGCTCAAAATGAAGCCCGGGGCTAGAATAGGAGAGAGAGAGAGAGGCGGGTGCTCCTCGTCGCTCTATCGATCTGCGTCTTGTTTCCCTCTCAACTCATCATCTTGCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>505 197 169 81 48</canonical_bands>
                <polymorphic_bands>702 169 81 48</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>486 326 107 38 18 15 10</canonical_bands>
                <polymorphic_bands>486 326 107 38 25 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAGTTTGTGCGAAAACAAGTC</pcr_primer_p1>
		<pcr_primer_p2>CATAAGGAAGTAGGTTTGGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAATTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATG</canonical_amplicon>
		<polymorphic_amplicon>ATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAATTYAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12273</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>201816</contig_pos>
        <strand></strand>
        <context>AGATTCCCAA[C/A]AGTACCACCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AACCCATTAGGACAGTTTTCGAAGAACTCAAAGTTTTGAGAGATTCCCAA</left_flank>
        <right_flank>AGTACCACCTGATCTTCTTATTTTTTAAAATTTATTTTATTATTTTTTAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTAAGTACAGAAAAGTTGACAACTGCAAGAAATAGAGTTCTATATTCGGTTGACAGTTTCTGAAATTTTCAGAACAAACGGGCAAATTTAAAGTACTCTTTGAGACACTTAAGACTGACCATATTCAACTCAAGTTTTCTATTTTTGTGTGACGTTTCGGCTAGCACTGTATCAAATTCTATGTCTCATAGATTTTCAGTGATTTTTTGTAATCTTGTAACGAAAAACATTTGATCTTAAATACAAATTTTCAAAATTGAAATCATCTGTAGTACCGGTCAATATGATCTGCAAAAACGTATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACAGAACTTAGTGAAATTTGCTTTTTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCCCGTTTTTGTACTGAAAGCGTTTCAATTTTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAGTTTTCGAAGAACTCAAAGTTTTGAGAGATTCCCAACAGTACCACCTGATCTTCTTATTTTTTAAAATTTATTTTATTATTTTTTAAATTCATGTTTTCTTCGATTTCTCAAATCTTAAAATCACAACATTTGAATATTTCAGGAAGTTTATTTTGGCAAAACAGTCAAGATCAAGATCTCCAAGGATCAACACACATGAGAAGACTGACGGAGAATTATTATTATTATTATCATCAAATTATTATTCAATTATTATTATTATTATTTTTATTATTATTACAAGTTCCGTCAAAACACGACGAAAGGATTGTTTTGCATTGAAGGCGAAAAAGTTAATTGAGGGAGTCTACCCGCCCGATGAGATGAAAGTCATAAGTCCGGAACGCTGCGGATTGTTCGCGATTTACTTTCCGGTTCCAGAGAACGTTGGAGTGTATTGACAAGCTTCATAGTCGACTGGAGAAATCATGTTGAAAGCTTTGGTCATCACGTTGATGTAGTCTGTAAAATTGACCAGTTGGCTTAACAGGTTTTTT</canonical>
            <polymorphic>AGTTAAGTACAGAAAAGTTGACAACTGCAAGAAATAGAGTTCTATATTCGGTTGACAGTTTCTGAAATTTTCAGAACAAACGGGCAAATTTAAAGTACTCTTTGAGACACTTAAGACTGACCATATTCAACTCAAGTTTTCTATTTTTGTGTGACGTTTCGGCTAGCACTGTATCAAATTCTATGTCTCATAGATTTTCAGTGATTTTTTGTAATCTTGTAACGAAAAACATTTGATCTTAAATACAAATTTTCAAAATTGAAATCATCTGTAGTACCGGTCAATATGATCTGCAAAAACGTATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACAGAACTTAGTGAAATTTGCTTTTTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCCCGTTTTTGTACTGAAAGCGTTTCAATTTTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAGTTTTCGAAGAACTCAAAGTTTTGAGAGATTCCCAAMAGTACCACCTGATCTTCTTATTTTTTAAAATTTATTTTATTATTTTTTAAATTCATGTTTTCTTCGATTTCTCAAATCTTAAAATCACAACATTTGAATATTTCAGGAAGTTTATTTTGGCAAAACAGTCAAGATCAAGATCTCCAAGGATCAACACACATGAGAAGACTGACGGAGAATTATTATTATTATTATCATCAAATTATTATTCAATTATTATTATTATTATTTTTATTATTATTACAAGTTCCGTCAAAACACGACGAAAGGATTGTTTTGCATTGAAGGCGAAAAAGTTAATTGAGGGAGTCTACCCGCCCGATGAGATGAAAGTCATAAGTCCGGAACGCTGCGGATTGTTCGCGATTTACTTTCCGGTTCCAGAGAACGTTGGAGTGTATTGACAAGCTTCATAGTCGACTGGAGAAATCATGTTGAAAGCTTTGGTCATCACGTTGATGTAGTCTGTAAAATTGACCAGTTGGCTTAACAGGTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>373 293 126 113 57 38</canonical_bands>
                <polymorphic_bands>373 293 164 113 57</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAAAAAGTTGCCAGTTA</pcr_primer_p1>
		<pcr_primer_p2>CTTCTCATGTGTGTTGATCCT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAGTTTTCGAAGAACTCAAAGTTTTGAGAGATTCCCAACAGTACCACCTGATCTTCTTATTTTTTAAAATTTATTTTATTATTTTTTAAATTCATGTTTTCTTCGATTTCTCAAATCTTAAAATCACAACATTTGAATATTTCAGGAAGTTTATTTTGGCAAAACAGTCAAGATCAAGATCTCCAAGGATCAACACACATGAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAGTTTTCGAAGAACTCAAAGTTTTGAGAGATTCCCAAMAGTACCACCTGATCTTCTTATTTTTTAAAATTTATTTTATTATTTTTTAAATTCATGTTTTCTTCGATTTCTCAAATCTTAAAATCACAACATTTGAATATTTCAGGAAGTTTATTTTGGCAAAACAGTCAAGATCAAGATCTCCAAGGATCAACACACATGAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12274</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>201792</contig_pos>
        <strand></strand>
        <context>TTTCGAAGAA[C/T]TCAAAGTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAGTTTTCGAAGAA</left_flank>
        <right_flank>TCAAAGTTTTGAGAGATTCCCAACAGTACCACCTGATCTTCTTATTTTTT</right_flank>
        <qual_score>46</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTATCATTTTGGCAAGTTCAAAAGTTAAGTACAGAAAAGTTGACAACTGCAAGAAATAGAGTTCTATATTCGGTTGACAGTTTCTGAAATTTTCAGAACAAACGGGCAAATTTAAAGTACTCTTTGAGACACTTAAGACTGACCATATTCAACTCAAGTTTTCTATTTTTGTGTGACGTTTCGGCTAGCACTGTATCAAATTCTATGTCTCATAGATTTTCAGTGATTTTTTGTAATCTTGTAACGAAAAACATTTGATCTTAAATACAAATTTTCAAAATTGAAATCATCTGTAGTACCGGTCAATATGATCTGCAAAAACGTATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACAGAACTTAGTGAAATTTGCTTTTTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCCCGTTTTTGTACTGAAAGCGTTTCAATTTTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAGTTTTCGAAGAACTCAAAGTTTTGAGAGATTCCCAACAGTACCACCTGATCTTCTTATTTTTTAAAATTTATTTTATTATTTTTTAAATTCATGTTTTCTTCGATTTCTCAAATCTTAAAATCACAACATTTGAATATTTCAGGAAGTTTATTTTGGCAAAACAGTCAAGATCAAGATCTCCAAGGATCAACACACATGAGAAGACTGACGGAGAATTATTATTATTATTATCATCAAATTATTATTCAATTATTATTATTATTATTTTTATTATTATTACAAGTTCCGTCAAAACACGACGAAAGGATTGTTTTGCATTGAAGGCGAAAAAGTTAATTGAGGGAGTCTACCCGCCCGATGAGATGAAAGTCATAAGTCCGGAACGCTGCGGATTGTTCGCGATTTACTTTCCGGTTCCAGAGAACGTTGGAGTGTATTGACAAGCTTCATAGTCGACTGGAGAAATCATGTTGAAAGCTTTGGTCATCACGTTGATGTAGTCTGTAAAATTG</canonical>
            <polymorphic>GCTTATCATTTTGGCAAGTTCAAAAGTTAAGTACAGAAAAGTTGACAACTGCAAGAAATAGAGTTCTATATTCGGTTGACAGTTTCTGAAATTTTCAGAACAAACGGGCAAATTTAAAGTACTCTTTGAGACACTTAAGACTGACCATATTCAACTCAAGTTTTCTATTTTTGTGTGACGTTTCGGCTAGCACTGTATCAAATTCTATGTCTCATAGATTTTCAGTGATTTTTTGTAATCTTGTAACGAAAAACATTTGATCTTAAATACAAATTTTCAAAATTGAAATCATCTGTAGTACCGGTCAATATGATCTGCAAAAACGTATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACAGAACTTAGTGAAATTTGCTTTTTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCCCGTTTTTGTACTGAAAGCGTTTCAATTTTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAGTTTTCGAAGAAYTCAAAGTTTTGAGAGATTCCCAACAGTACCACCTGATCTTCTTATTTTTTAAAATTTATTTTATTATTTTTTAAATTCATGTTTTCTTCGATTTCTCAAATCTTAAAATCACAACATTTGAATATTTCAGGAAGTTTATTTTGGCAAAACAGTCAAGATCAAGATCTCCAAGGATCAACACACATGAGAAGACTGACGGAGAATTATTATTATTATTATCATCAAATTATTATTCAATTATTATTATTATTATTTTTATTATTATTACAAGTTCCGTCAAAACACGACGAAAGGATTGTTTTGCATTGAAGGCGAAAAAGTTAATTGAGGGAGTCTACCCGCCCGATGAGATGAAAGTCATAAGTCCGGAACGCTGCGGATTGTTCGCGATTTACTTTCCGGTTCCAGAGAACGTTGGAGTGTATTGACAAGCTTCATAGTCGACTGGAGAAATCATGTTGAAAGCTTTGGTCATCACGTTGATGTAGTCTGTAAAATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAAAAACATTTGATCTTAAATAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTGAGAAATCGAAGAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>355</pcr_amplicon_size>
		<canonical_amplicon>CGAAAAACATTTGATCTTAAATACAAATTTTCAAAATTGAAATCATCTGTAGTACCGGTCAATATGATCTGCAAAAACGTATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACAGAACTTAGTGAAATTTGCTTTTTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCCCGTTTTTGTACTGAAAGCGTTTCAATTTTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAGTTTTCGAAGAACTCAAAGTTTTGAGAGATTCCCAACAGTACCACCTGATCTTCTTATTTTTTAAAATTTATTTTATTATTTTTTAAATTCATGTTTTCTTCGATTTCTCAAAT</canonical_amplicon>
		<polymorphic_amplicon>CGAAAAACATTTGATCTTAAATACAAATTTTCAAAATTGAAATCATCTGTAGTACCGGTCAATATGATCTGCAAAAACGTATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACAGAACTTAGTGAAATTTGCTTTTTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCCCGTTTTTGTACTGAAAGCGTTTCAATTTTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAGTTTTCGAAGAAYTCAAAGTTTTGAGAGATTCCCAACAGTACCACCTGATCTTCTTATTTTTTAAAATTTATTTTATTATTTTTTAAATTCATGTTTTCTTCGATTTCTCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12277</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>201986</contig_pos>
        <strand></strand>
        <context>ATGAGAAGAC[T/A]GACGGAGAat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GCAAAACAGTCAAGATCAAGATCTCCAAGGATCAACACACATGAGAAGAC</left_flank>
        <right_flank>GACGGAGAATTATTATTATTATTATCATCAAATTATTATTCAATTATTAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATCAAATTCTATGTCTCATAGATTTTCAGTGATTTTTTGTAATCTTGTAACGAAAAACATTTGATCTTAAATACAAATTTTCAAAATTGAAATCATCTGTAGTACCGGTCAATATGATCTGCAAAAACGTATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACAGAACTTAGTGAAATTTGCTTTTTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCCCGTTTTTGTACTGAAAGCGTTTCAATTTTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAGTTTTCGAAGAACTCAAAGTTTTGAGAGATTCCCAACAGTACCACCTGATCTTCTTATTTTTTAAAATTTATTTTATTATTTTTTAAATTCATGTTTTCTTCGATTTCTCAAATCTTAAAATCACAACATTTGAATATTTCAGGAAGTTTATTTTGGCAAAACAGTCAAGATCAAGATCTCCAAGGATCAACACACATGAGAAGACTGACGGAGAATTATTATTATTATTATCATCAAATTATTATTCAATTATTATTATTATTATTTTTATTATTATTACAAGTTCCGTCAAAACACGACGAAAGGATTGTTTTGCATTGAAGGCGAAAAAGTTAATTGAGGGAGTCTACCCGCCCGATGAGATGAAAGTCATAAGTCCGGAACGCTGCGGATTGTTCGCGATTTACTTTCCGGTTCCAGAGAACGTTGGAGTGTATTGACAAGCTTCATAGTCGACTGGAGAAATCATGTTGAAAGCTTTGGTCATCACGTTGATGTAGTCTGTAAAATTGACCAGTTGGCTTAACAGGTTTTTTGTTGTTTTTTGTGACTTACTGTTCTGTTGCAAGAATTCCAATACGTTCTTCATGTGAAGCTTTCTGAAGCGTTCTGGATCACGAGCGATGACAAAGACTGGATATCTGACCCATGTGGAGACAATAGCGTAGTCGTATTGCTTGTACTCGTTAAGTGGTCCCATTTTGAT</canonical>
            <polymorphic>GTATCAAATTCTATGTCTCATAGATTTTCAGTGATTTTTTGTAATCTTGTAACGAAAAACATTTGATCTTAAATACAAATTTTCAAAATTGAAATCATCTGTAGTACCGGTCAATATGATCTGCAAAAACGTATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACAGAACTTAGTGAAATTTGCTTTTTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCCCGTTTTTGTACTGAAAGCGTTTCAATTTTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAGTTTTCGAAGAACTCAAAGTTTTGAGAGATTCCCAACAGTACCACCTGATCTTCTTATTTTTTAAAATTTATTTTATTATTTTTTAAATTCATGTTTTCTTCGATTTCTCAAATCTTAAAATCACAACATTTGAATATTTCAGGAAGTTTATTTTGGCAAAACAGTCAAGATCAAGATCTCCAAGGATCAACACACATGAGAAGACWGACGGAGAATTATTATTATTATTATCATCAAATTATTATTCAATTATTATTATTATTATTTTTATTATTATTACAAGTTCCGTCAAAACACGACGAAAGGATTGTTTTGCATTGAAGGCGAAAAAGTTAATTGAGGGAGTCTACCCGCCCGATGAGATGAAAGTCATAAGTCCGGAACGCTGCGGATTGTTCGCGATTTACTTTCCGGTTCCAGAGAACGTTGGAGTGTATTGACAAGCTTCATAGTCGACTGGAGAAATCATGTTGAAAGCTTTGGTCATCACGTTGATGTAGTCTGTAAAATTGACCAGTTGGCTTAACAGGTTTTTTGTTGTTTTTTGTGACTTACTGTTCTGTTGCAAGAATTCCAATACGTTCTTCATGTGAAGCTTTCTGAAGCGTTCTGGATCACGAGCGATGACAAAGACTGGATATCTGACCCATGTGGAGACAATAGCGTAGTCGTATTGCTTGTACTCGTTAAGTGGTCCCATTTTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTCTCAAATCTTAAAATCACA</pcr_primer_p1>
		<pcr_primer_p2>GGTAGACTCCCTCAATTAACTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATTTCTCAAATCTTAAAATCACAACATTTGAATATTTCAGGAAGTTTATTTTGGCAAAACAGTCAAGATCAAGATCTCCAAGGATCAACACACATGAGAAGACTGACGGAGAATTATTATTATTATTATCATCAAATTATTATTCAATTATTATTATTATTATTTTTATTATTATTACAAGTTCCGTCAAAACACGACGAAAGGATTGTTTTGCATTGAAGGCGAAAAAGTTAATTGAGGGAGTCTACC</canonical_amplicon>
		<polymorphic_amplicon>GATTTCTCAAATCTTAAAATCACAACATTTGAATATTTCAGGAAGTTTATTTTGGCAAAACAGTCAAGATCAAGATCTCCAAGGATCAACACACATGAGAAGACWGACGGAGAATTATTATTATTATTATCATCAAATTATTATTCAATTATTATTATTATTATTTTTATTATTATTACAAGTTCCGTCAAAACACGACGAAAGGATTGTTTTGCATTGAAGGCGAAAAAGTTAATTGAGGGAGTCTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12278</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>414924</contig_pos>
        <strand>+</strand>
        <context>GTCRAAAAAR[A/T]AGACCCAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAA</left_flank>
        <right_flank>AGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTTTGCCCCTGGGAAAGTCTGCAAATCCCAAAAGTCCCCAAAAAATTTGAAAATAGAAGCTATACCGTTTTTTTTCCGTCCGTGCCAATGACTCATATTTCAGCGTTTCAAAATATTCGTAATTTCTCCTCCCATCATGTGACTAATAACAAAAATATTGGGACAATACATGTACAACTACTACTAGCTTCTAGAACAATAGAATCTTTAGTCATTTTTTCTGTCTCTCCCGGTGCCCAAGCACCGTTTTCTTCTTGCAGTTCTGTACGATTCATTCCCTCATTAACTGAAACGCTAAGCCAGGTAATCCATGAGGGCCCCCTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACAG</canonical>
            <polymorphic>ATTTTTTTTGCCCCTGGGAAAGTCTGCAAATCCCAAAAGTCCCCAAAAAATTTGAAAATAGAAGCTATACCGTTTTTTTTCCGTCCGTGCCAATGACTCATATTTCAGCGTTTCAAAATATTCGTAATTTCTCCTCCCATCATGTGACTAATAACAAAAATATTGGGACAATACATGTACAACTACTACTAGCTTCTAGAACAATAGAATCTTTAGTCATTTTTTCTGTCTCTCCCGGTGCCCAAGCACCGTTTTCTTCTTGCAGTTCTGTACGATTCATTCCCTCATTAACTGAAACGCTAAGCCAGGTAATCCATGAGGGCCCCCTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAWAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAATGTCCCCTCTTCTTCTAAC</pcr_primer_p1>
		<pcr_primer_p2>GACCTGTGACTGACTTCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTC</canonical_amplicon>
		<polymorphic_amplicon>CTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAWAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12281</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>414982</contig_pos>
        <strand>+</strand>
        <context>CGGGAAAGAA[A/G]AAGAAGAAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAA</left_flank>
        <right_flank>AAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAAGCTATACCGTTTTTTTTCCGTCCGTGCCAATGACTCATATTTCAGCGTTTCAAAATATTCGTAATTTCTCCTCCCATCATGTGACTAATAACAAAAATATTGGGACAATACATGTACAACTACTACTAGCTTCTAGAACAATAGAATCTTTAGTCATTTTTTCTGTCTCTCCCGGTGCCCAAGCACCGTTTTCTTCTTGCAGTTCTGTACGATTCATTCCCTCATTAACTGAAACGCTAAGCCAGGTAATCCATGAGGGCCCCCTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACAGTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAATTTCACATTT</canonical>
            <polymorphic>TAGAAGCTATACCGTTTTTTTTCCGTCCGTGCCAATGACTCATATTTCAGCGTTTCAAAATATTCGTAATTTCTCCTCCCATCATGTGACTAATAACAAAAATATTGGGACAATACATGTACAACTACTACTAGCTTCTAGAACAATAGAATCTTTAGTCATTTTTTCTGTCTCTCCCGGTGCCCAAGCACCGTTTTCTTCTTGCAGTTCTGTACGATTCATTCCCTCATTAACTGAAACGCTAAGCCAGGTAATCCATGAGGGCCCCCTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAARAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACAGTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAATTTCACATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCGCTTTCTTCAATATGTTT</pcr_primer_p1>
		<pcr_primer_p2>CAGGTGTACATTTGACTGACAT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTG</canonical_amplicon>
		<polymorphic_amplicon>GTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAARAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12282</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>415074</contig_pos>
        <strand>+</strand>
        <context>TCTCCTTTTT[C/T]GTGTGTCACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTT</left_flank>
        <right_flank>GTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAACAAAAATATTGGGACAATACATGTACAACTACTACTAGCTTCTAGAACAATAGAATCTTTAGTCATTTTTTCTGTCTCTCCCGGTGCCCAAGCACCGTTTTCTTCTTGCAGTTCTGTACGATTCATTCCCTCATTAACTGAAACGCTAAGCCAGGTAATCCATGAGGGCCCCCTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACAGTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAATTTCACATTTTGATTAATTGGAAAAAGAGTGATTATGGTGATCTGTGATATTTGCGATACAGTATGACCAGTACCGGTAAATGAGATATACAGCACTCTTTT</canonical>
            <polymorphic>ATAACAAAAATATTGGGACAATACATGTACAACTACTACTAGCTTCTAGAACAATAGAATCTTTAGTCATTTTTTCTGTCTCTCCCGGTGCCCAAGCACCGTTTTCTTCTTGCAGTTCTGTACGATTCATTCCCTCATTAACTGAAACGCTAAGCCAGGTAATCCATGAGGGCCCCCTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTYGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACAGTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAATTTCACATTTTGATTAATTGGAAAAAGAGTGATTATGGTGATCTGTGATATTTGCGATACAGTATGACCAGTACCGGTAAATGAGATATACAGCACTCTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTCGTGTCATTTTGGATAC</pcr_primer_p1>
		<pcr_primer_p2>ATACGGAAGGGATAAAAGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTAT</canonical_amplicon>
		<polymorphic_amplicon>GTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTYGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12283</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>415142</contig_pos>
        <strand>+</strand>
        <context>TCCGTATGTC[A/C]YATAGATTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTC</left_flank>
        <right_flank>TATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTCTGTCTCTCCCGGTGCCCAAGCACCGTTTTCTTCTTGCAGTTCTGTACGATTCATTCCCTCATTAACTGAAACGCTAAGCCAGGTAATCCATGAGGGCCCCCTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACAGTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAATTTCACATTTTGATTAATTGGAAAAAGAGTGATTATGGTGATCTGTGATATTTGCGATACAGTATGACCAGTACCGGTAAATGAGATATACAGCACTCTTTTTTTAGAAATTTTCCCCATTCTGGAGCTCGGCAGCCAAGTTTACGATCATTTTGAAATTTGTGGAGAAT</canonical>
            <polymorphic>ATTTTTTCTGTCTCTCCCGGTGCCCAAGCACCGTTTTCTTCTTGCAGTTCTGTACGATTCATTCCCTCATTAACTGAAACGCTAAGCCAGGTAATCCATGAGGGCCCCCTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCMTATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACAGTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAATTTCACATTTTGATTAATTGGAAAAAGAGTGATTATGGTGATCTGTGATATTTGCGATACAGTATGACCAGTACCGGTAAATGAGATATACAGCACTCTTTTTTTAGAAATTTTCCCCATTCTGGAGCTCGGCAGCCAAGTTTACGATCATTTTGAAATTTGTGGAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGCCTTCTGTTCTCCTTTT</pcr_primer_p1>
		<pcr_primer_p2>GACTTTACTCAAGATTCCAAGGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTC</canonical_amplicon>
		<polymorphic_amplicon>GTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCMTATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12284</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>415143</contig_pos>
        <strand>+</strand>
        <context>CCGTATGTCM[C/T]ATAGATTCCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCA</left_flank>
        <right_flank>ATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTCTGTCTCTCCCGGTGCCCAAGCACCGTTTTCTTCTTGCAGTTCTGTACGATTCATTCCCTCATTAACTGAAACGCTAAGCCAGGTAATCCATGAGGGCCCCCTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACAGTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAATTTCACATTTTGATTAATTGGAAAAAGAGTGATTATGGTGATCTGTGATATTTGCGATACAGTATGACCAGTACCGGTAAATGAGATATACAGCACTCTTTTTTTAGAAATTTTCCCCATTCTGGAGCTCGGCAGCCAAGTTTACGATCATTTTGAAATTTGTGGAGAATG</canonical>
            <polymorphic>TTTTTTCTGTCTCTCCCGGTGCCCAAGCACCGTTTTCTTCTTGCAGTTCTGTACGATTCATTCCCTCATTAACTGAAACGCTAAGCCAGGTAATCCATGAGGGCCCCCTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCAYATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACAGTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAATTTCACATTTTGATTAATTGGAAAAAGAGTGATTATGGTGATCTGTGATATTTGCGATACAGTATGACCAGTACCGGTAAATGAGATATACAGCACTCTTTTTTTAGAAATTTTCCCCATTCTGGAGCTCGGCAGCCAAGTTTACGATCATTTTGAAATTTGTGGAGAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGCCTTCTGTTCTCCTTTT</pcr_primer_p1>
		<pcr_primer_p2>GACTTTACTCAAGATTCCAAGGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTC</canonical_amplicon>
		<polymorphic_amplicon>GTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCAYATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12285</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>415211</contig_pos>
        <strand>+</strand>
        <context>GATCCTCTCT[C/T]CTCTCGAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCT</left_flank>
        <right_flank>CTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAACTGAAACGCTAAGCCAGGTAATCCATGAGGGCCCCCTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACAGTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAATTTCACATTTTGATTAATTGGAAAAAGAGTGATTATGGTGATCTGTGATATTTGCGATACAGTATGACCAGTACCGGTAAATGAGATATACAGCACTCTTTTTTTAGAAATTTTCCCCATTCTGGAGCTCGGCAGCCAAGTTTACGATCATTTTGAAATTTGTGGAGAATGTAAAACAGATAAAGATTGAAGACCTTACATTATCAGAATTTTTCAAAAGTTCCTAGTTTTTAAGCTTC</canonical>
            <polymorphic>TTAACTGAAACGCTAAGCCAGGTAATCCATGAGGGCCCCCTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTYCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACAGTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAATTTCACATTTTGATTAATTGGAAAAAGAGTGATTATGGTGATCTGTGATATTTGCGATACAGTATGACCAGTACCGGTAAATGAGATATACAGCACTCTTTTTTTAGAAATTTTCCCCATTCTGGAGCTCGGCAGCCAAGTTTACGATCATTTTGAAATTTGTGGAGAATGTAAAACAGATAAAGATTGAAGACCTTACATTATCAGAATTTTTCAAAAGTTCCTAGTTTTTAAGCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTATCCCTTCCGTATGTC</pcr_primer_p1>
		<pcr_primer_p2>AAATAATTGGGTAAAATATGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTYCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12286</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>415241</contig_pos>
        <strand>+</strand>
        <context>TTTCCTGTMY[G/T]TCWTTGTMRA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTAT</left_flank>
        <right_flank>TCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGGCCCCCTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACAGTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAATTTCACATTTTGATTAATTGGAAAAAGAGTGATTATGGTGATCTGTGATATTTGCGATACAGTATGACCAGTACCGGTAAATGAGATATACAGCACTCTTTTTTTAGAAATTTTCCCCATTCTGGAGCTCGGCAGCCAAGTTTACGATCATTTTGAAATTTGTGGAGAATGTAAAACAGATAAAGATTGAAGACCTTACATTATCAGAATTTTTCAAAAGTTCCTAGTTTTTAAGCTTCTTACCCATTTCTGAAAAAAACCCTTTTTGT</canonical>
            <polymorphic>GAGGGCCCCCTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATKTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACAGTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAATTTCACATTTTGATTAATTGGAAAAAGAGTGATTATGGTGATCTGTGATATTTGCGATACAGTATGACCAGTACCGGTAAATGAGATATACAGCACTCTTTTTTTAGAAATTTTCCCCATTCTGGAGCTCGGCAGCCAAGTTTACGATCATTTTGAAATTTGTGGAGAATGTAAAACAGATAAAGATTGAAGACCTTACATTATCAGAATTTTTCAAAAGTTCCTAGTTTTTAAGCTTCTTACCCATTTCTGAAAAAAACCCTTTTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTATCCCTTCCGTATGTC</pcr_primer_p1>
		<pcr_primer_p2>AAATAATTGGGTAAAATATGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATKTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12290</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>415266</contig_pos>
        <strand>+</strand>
        <context>GAAGCGCACA[C/T]CTTCTACCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACA</left_flank>
        <right_flank>CTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACAGTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAATTTCACATTTTGATTAATTGGAAAAAGAGTGATTATGGTGATCTGTGATATTTGCGATACAGTATGACCAGTACCGGTAAATGAGATATACAGCACTCTTTTTTTAGAAATTTTCCCCATTCTGGAGCTCGGCAGCCAAGTTTACGATCATTTTGAAATTTGTGGAGAATGTAAAACAGATAAAGATTGAAGACCTTACATTATCAGAATTTTTCAAAAGTTCCTAGTTTTTAAGCTTCTTACCCATTTCTGAAAAAAACCCTTTTTGTCCCGTTTTTCGTATTAAAAACGTGA</canonical>
            <polymorphic>TTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACAYCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACAGTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAATTTCACATTTTGATTAATTGGAAAAAGAGTGATTATGGTGATCTGTGATATTTGCGATACAGTATGACCAGTACCGGTAAATGAGATATACAGCACTCTTTTTTTAGAAATTTTCCCCATTCTGGAGCTCGGCAGCCAAGTTTACGATCATTTTGAAATTTGTGGAGAATGTAAAACAGATAAAGATTGAAGACCTTACATTATCAGAATTTTTCAAAAGTTCCTAGTTTTTAAGCTTCTTACCCATTTCTGAAAAAAACCCTTTTTGTCCCGTTTTTCGTATTAAAAACGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>212 165 129 98 69 61 48 44 29 26 22 21 17 13 10 9 7 6 3 3 3 2 2 1</canonical_bands>
                <polymorphic_bands>214 165 129 98 69 61 48 44 29 26 22 21 17 13 10 9 7 6 3 3 3 2 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTTATCCCTTCCGTATGTC</pcr_primer_p1>
		<pcr_primer_p2>AAATAATTGGGTAAAATATGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACAYCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12291</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>415323</contig_pos>
        <strand>+</strand>
        <context>TAGGACTATT[G/T]TAATTACCGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATT</left_flank>
        <right_flank>TAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACAGTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAATTTCACATTTTGATTAATTGGAAAAAGAGTGATTATGGTGATCTGTGATATTTGCGATACAGTATGACCAGTACCGGTAAATGAGATATACAGCACTCTTTTTTTAGAAATTTTCCCCATTCTGGAGCTCGGCAGCCAAGTTTACGATCATTTTGAAATTTGTGGAGAATGTAAAACAGATAAAGATTGAAGACCTTACATTATCAGAATTTTTCAAAAGTTCCTAGTTTTTAAGCTTCTTACCCATTTCTGAAAAAAACCCTTTTTGTCCCGTTTTTCGTATTAAAAACGTGAGAAACAGGTTTCTTTCAGAAATCAACAAATATCTGAAAAACTAGATTTTTTCAAAAA</canonical>
            <polymorphic>CTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTKTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACAGTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAATTTCACATTTTGATTAATTGGAAAAAGAGTGATTATGGTGATCTGTGATATTTGCGATACAGTATGACCAGTACCGGTAAATGAGATATACAGCACTCTTTTTTTAGAAATTTTCCCCATTCTGGAGCTCGGCAGCCAAGTTTACGATCATTTTGAAATTTGTGGAGAATGTAAAACAGATAAAGATTGAAGACCTTACATTATCAGAATTTTTCAAAAGTTCCTAGTTTTTAAGCTTCTTACCCATTTCTGAAAAAAACCCTTTTTGTCCCGTTTTTCGTATTAAAAACGTGAGAAACAGGTTTCTTTCAGAAATCAACAAATATCTGAAAAACTAGATTTTTTCAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTACCTACCTTGGAATCTTGAGT</pcr_primer_p1>
		<pcr_primer_p2>CACAGATCACCATAATCACTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACAGTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAATTTCACATTTTGATTAATTGGAAAAAGAGTGATTATGGTGATCTGTG</canonical_amplicon>
		<polymorphic_amplicon>CTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTKTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACAGTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAATTTCACATTTTGATTAATTGGAAAAAGAGTGATTATGGTGATCTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12292</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>416038</contig_pos>
        <strand>+</strand>
        <context>AAGTAAGATC[C/T]TTTGATTTWT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAATCTGCATAATAAATTGTTTGGTACTGTATTTATTCAAGTAAGATC</left_flank>
        <right_flank>TTTGATTTTTTGAATCTACCATATACACGGCTTCTCACGATTTACAAGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCAGTACCGGTAAATGAGATATACAGCACTCTTTTTTTAGAAATTTTCCCCATTCTGGAGCTCGGCAGCCAAGTTTACGATCATTTTGAAATTTGTGGAGAATGTAAAACAGATAAAGATTGAAGACCTTACATTATCAGAATTTTTCAAAAGTTCCTAGTTTTTAAGCTTCTTACCCATTTCTGAAAAAAACCCTTTTTGTCCCGTTTTTCGTATTAAAAACGTGAGAAACAGGTTTCTTTCAGAAATCAACAAATATCTGAAAAACTAGATTTTTTCAAAAATTCTGTGAATGCAAAGGTATCAATCTACATAGGTATATTTTTCATTTTCAAAAATTTTCAAACTGATCGGAAACGTGACACACGAGCTTTGGACTACGGAAGATGTTCAAAAATGACCGAAATTCTTCAGAAAAAGCATTTCTGCGTATCTAGATAATAAATTGTTCAATCTGCATAATAAATTGTTTGGTACTGTATTTATTCAAGTAAGATCCTTTGATTTTTTGAATCTACCATATACACGGCTTCTCACGATTTACAAGGCCAGCATTTTCAAAAAATTGAACTGTCACCTCGCATCAGCATTCTGGCAGTCCTTATTCTCGTCTCCATACTCCTCTTATTATCCACCAAACCTATCCAGCGAGTATGTTTATATTATAAAACCAGAAGCCAAAACGGATCGTAAACCGGCGGCATCCTCCCGGCAGTAGCTTTTTCGCGGACTCAATTATGCCGACACGAGTCCATCTGTTAAGAGATGAGTTGACAGGTCCGCACATGTTGCTTTTAGGGTGTCTCTTTTTTGATCGTGCCGTGCACCAGAAGGTGCGAGAAAGAGAGGGGCTTGTAAATTTTCTGCTGACTCGAGATAGCACATCGTAAATTATGGCTCGATCGGAAAACAATTATTCTAGATTATTAAAGATCAATGCCGATAACGAGTATTGGGTTACAAGTGAGCAGAAGTCTGGAAGTTATATAGATCAAAAGG</canonical>
            <polymorphic>ACCAGTACCGGTAAATGAGATATACAGCACTCTTTTTTTAGAAATTTTCCCCATTCTGGAGCTCGGCAGCCAAGTTTACGATCATTTTGAAATTTGTGGAGAATGTAAAACAGATAAAGATTGAAGACCTTACATTATCAGAATTTTTCAAAAGTTCCTAGTTTTTAAGCTTCTTACCCATTTCTGAAAAAAACCCTTTTTGTCCCGTTTTTCGTATTAAAAACGTGAGAAACAGGTTTCTTTCAGAAATCAACAAATATCTGAAAAACTAGATTTTTTCAAAAATTCTGTGAATGCAAAGGTATCAATCTACATAGGTATATTTTTCATTTTCAAAAATTTTCAAACTGATCGGAAACGTGACACACGAGCTTTGGACTACGGAAGATGTTCAAAAATGACCGAAATTCTTCAGAAAAAGCATTTCTGCGTATCTAGATAATAAATTGTTCAATCTGCATAATAAATTGTTTGGTACTGTATTTATTCAAGTAAGATCYTTTGATTTTTTGAATCTACCATATACACGGCTTCTCACGATTTACAAGGCCAGCATTTTCAAAAAATTGAACTGTCACCTCGCATCAGCATTCTGGCAGTCCTTATTCTCGTCTCCATACTCCTCTTATTATCCACCAAACCTATCCAGCGAGTATGTTTATATTATAAAACCAGAAGCCAAAACGGATCGTAAACCGGCGGCATCCTCCCGGCAGTAGCTTTTTCGCGGACTCAATTATGCCGACACGAGTCCATCTGTTAAGAGATGAGTTGACAGGTCCGCACATGTTGCTTTTAGGGTGTCTCTTTTTTGATCGTGCCGTGCACCAGAAGGTGCGAGAAAGAGAGGGGCTTGTAAATTTTCTGCTGACTCGAGATAGCACATCGTAAATTATGGCTCGATCGGAAAACAATTATTCTAGATTATTAAAGATCAATGCCGATAACGAGTATTGGGTTACAAGTGAGCAGAAGTCTGGAAGTTATATAGATCAAAAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTCAATCTGCATAATAAATTG</pcr_primer_p1>
		<pcr_primer_p2>GGATAGGTTTGGTGGATAATAAG</pcr_primer_p2>
		<pcr_amplicon_size>200</pcr_amplicon_size>
		<canonical_amplicon>TGTTCAATCTGCATAATAAATTGTTTGGTACTGTATTTATTCAAGTAAGATCCTTTGATTTTTTGAATCTACCATATACACGGCTTCTCACGATTTACAAGGCCAGCATTTTCAAAAAATTGAACTGTCACCTCGCATCAGCATTCTGGCAGTCCTTATTCTCGTCTCCATACTCCTCTTATTATCCACCAAACCTATCC</canonical_amplicon>
		<polymorphic_amplicon>TGTTCAATCTGCATAATAAATTGTTTGGTACTGTATTTATTCAAGTAAGATCYTTTGATTTTTTGAATCTACCATATACACGGCTTCTCACGATTTACAAGGCCAGCATTTTCAAAAAATTGAACTGTCACCTCGCATCAGCATTCTGGCAGTCCTTATTCTCGTCTCCATACTCCTCTTATTATCCACCAAACCTATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12295</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>416136</contig_pos>
        <strand>+</strand>
        <context>GCATTCTGGC[A/G]GTCCTTATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGCCAGCATTTTCAAAAAATTGAACTGTCACCTCGCATCAGCATTCTGGC</left_flank>
        <right_flank>GTCCTTATTCTCGTCTCCATACTCCTCTTATTATCCACCAAACCTATCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAATGTAAAACAGATAAAGATTGAAGACCTTACATTATCAGAATTTTTCAAAAGTTCCTAGTTTTTAAGCTTCTTACCCATTTCTGAAAAAAACCCTTTTTGTCCCGTTTTTCGTATTAAAAACGTGAGAAACAGGTTTCTTTCAGAAATCAACAAATATCTGAAAAACTAGATTTTTTCAAAAATTCTGTGAATGCAAAGGTATCAATCTACATAGGTATATTTTTCATTTTCAAAAATTTTCAAACTGATCGGAAACGTGACACACGAGCTTTGGACTACGGAAGATGTTCAAAAATGACCGAAATTCTTCAGAAAAAGCATTTCTGCGTATCTAGATAATAAATTGTTCAATCTGCATAATAAATTGTTTGGTACTGTATTTATTCAAGTAAGATCCTTTGATTTTTTGAATCTACCATATACACGGCTTCTCACGATTTACAAGGCCAGCATTTTCAAAAAATTGAACTGTCACCTCGCATCAGCATTCTGGCAGTCCTTATTCTCGTCTCCATACTCCTCTTATTATCCACCAAACCTATCCAGCGAGTATGTTTATATTATAAAACCAGAAGCCAAAACGGATCGTAAACCGGCGGCATCCTCCCGGCAGTAGCTTTTTCGCGGACTCAATTATGCCGACACGAGTCCATCTGTTAAGAGATGAGTTGACAGGTCCGCACATGTTGCTTTTAGGGTGTCTCTTTTTTGATCGTGCCGTGCACCAGAAGGTGCGAGAAAGAGAGGGGCTTGTAAATTTTCTGCTGACTCGAGATAGCACATCGTAAATTATGGCTCGATCGGAAAACAATTATTCTAGATTATTAAAGATCAATGCCGATAACGAGTATTGGGTTACAAGTGAGCAGAAGTCTGGAAGTTATATAGATCAAAAGGTCAATTGCAGATCCGATTTCTCTGATTAGATCTTTTAGACTAGACAAATATCTAATCCAGAAGGTTTAAGCTAAATGAGCATTTGATATAAAATACCG</canonical>
            <polymorphic>GAGAATGTAAAACAGATAAAGATTGAAGACCTTACATTATCAGAATTTTTCAAAAGTTCCTAGTTTTTAAGCTTCTTACCCATTTCTGAAAAAAACCCTTTTTGTCCCGTTTTTCGTATTAAAAACGTGAGAAACAGGTTTCTTTCAGAAATCAACAAATATCTGAAAAACTAGATTTTTTCAAAAATTCTGTGAATGCAAAGGTATCAATCTACATAGGTATATTTTTCATTTTCAAAAATTTTCAAACTGATCGGAAACGTGACACACGAGCTTTGGACTACGGAAGATGTTCAAAAATGACCGAAATTCTTCAGAAAAAGCATTTCTGCGTATCTAGATAATAAATTGTTCAATCTGCATAATAAATTGTTTGGTACTGTATTTATTCAAGTAAGATCCTTTGATTTTTTGAATCTACCATATACACGGCTTCTCACGATTTACAAGGCCAGCATTTTCAAAAAATTGAACTGTCACCTCGCATCAGCATTCTGGCRGTCCTTATTCTCGTCTCCATACTCCTCTTATTATCCACCAAACCTATCCAGCGAGTATGTTTATATTATAAAACCAGAAGCCAAAACGGATCGTAAACCGGCGGCATCCTCCCGGCAGTAGCTTTTTCGCGGACTCAATTATGCCGACACGAGTCCATCTGTTAAGAGATGAGTTGACAGGTCCGCACATGTTGCTTTTAGGGTGTCTCTTTTTTGATCGTGCCGTGCACCAGAAGGTGCGAGAAAGAGAGGGGCTTGTAAATTTTCTGCTGACTCGAGATAGCACATCGTAAATTATGGCTCGATCGGAAAACAATTATTCTAGATTATTAAAGATCAATGCCGATAACGAGTATTGGGTTACAAGTGAGCAGAAGTCTGGAAGTTATATAGATCAAAAGGTCAATTGCAGATCCGATTTCTCTGATTAGATCTTTTAGACTAGACAAATATCTAATCCAGAAGGTTTAAGCTAAATGAGCATTTGATATAAAATACCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCTTCTCACGATTTACAAG</pcr_primer_p1>
		<pcr_primer_p2>GACCTGTCAACTCATCTCTTAAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GGCTTCTCACGATTTACAAGGCCAGCATTTTCAAAAAATTGAACTGTCACCTCGCATCAGCATTCTGGCAGTCCTTATTCTCGTCTCCATACTCCTCTTATTATCCACCAAACCTATCCAGCGAGTATGTTTATATTATAAAACCAGAAGCCAAAACGGATCGTAAACCGGCGGCATCCTCCCGGCAGTAGCTTTTTCGCGGACTCAATTATGCCGACACGAGTCCATCTGTTAAGAGATGAGTTGACAGGTC</canonical_amplicon>
		<polymorphic_amplicon>GGCTTCTCACGATTTACAAGGCCAGCATTTTCAAAAAATTGAACTGTCACCTCGCATCAGCATTCTGGCRGTCCTTATTCTCGTCTCCATACTCCTCTTATTATCCACCAAACCTATCCAGCGAGTATGTTTATATTATAAAACCAGAAGCCAAAACGGATCGTAAACCGGCGGCATCCTCCCGGCAGTAGCTTTTTCGCGGACTCAATTATGCCGACACGAGTCCATCTGTTAAGAGATGAGTTGACAGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12296</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>416189</contig_pos>
        <strand>+</strand>
        <context>CCTATCCAGC[A/G]AGTWTGTTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTTATTCTCGTCTCCATACTCCTCTTATTATCCACCAAACCTATCCAGC</left_flank>
        <right_flank>AGTATGTTTATATTATAAAACCAGAAGCCAAAACGGATCGTAAACCGGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTCCTAGTTTTTAAGCTTCTTACCCATTTCTGAAAAAAACCCTTTTTGTCCCGTTTTTCGTATTAAAAACGTGAGAAACAGGTTTCTTTCAGAAATCAACAAATATCTGAAAAACTAGATTTTTTCAAAAATTCTGTGAATGCAAAGGTATCAATCTACATAGGTATATTTTTCATTTTCAAAAATTTTCAAACTGATCGGAAACGTGACACACGAGCTTTGGACTACGGAAGATGTTCAAAAATGACCGAAATTCTTCAGAAAAAGCATTTCTGCGTATCTAGATAATAAATTGTTCAATCTGCATAATAAATTGTTTGGTACTGTATTTATTCAAGTAAGATCCTTTGATTTTTTGAATCTACCATATACACGGCTTCTCACGATTTACAAGGCCAGCATTTTCAAAAAATTGAACTGTCACCTCGCATCAGCATTCTGGCAGTCCTTATTCTCGTCTCCATACTCCTCTTATTATCCACCAAACCTATCCAGCGAGTATGTTTATATTATAAAACCAGAAGCCAAAACGGATCGTAAACCGGCGGCATCCTCCCGGCAGTAGCTTTTTCGCGGACTCAATTATGCCGACACGAGTCCATCTGTTAAGAGATGAGTTGACAGGTCCGCACATGTTGCTTTTAGGGTGTCTCTTTTTTGATCGTGCCGTGCACCAGAAGGTGCGAGAAAGAGAGGGGCTTGTAAATTTTCTGCTGACTCGAGATAGCACATCGTAAATTATGGCTCGATCGGAAAACAATTATTCTAGATTATTAAAGATCAATGCCGATAACGAGTATTGGGTTACAAGTGAGCAGAAGTCTGGAAGTTATATAGATCAAAAGGTCAATTGCAGATCCGATTTCTCTGATTAGATCTTTTAGACTAGACAAATATCTAATCCAGAAGGTTTAAGCTAAATGAGCATTTGATATAAAATACCGGTCAACTAGATATACGAAAACCAATTTTTAGTTAATTTTTGTCATTTTCAGAA</canonical>
            <polymorphic>AAGTTCCTAGTTTTTAAGCTTCTTACCCATTTCTGAAAAAAACCCTTTTTGTCCCGTTTTTCGTATTAAAAACGTGAGAAACAGGTTTCTTTCAGAAATCAACAAATATCTGAAAAACTAGATTTTTTCAAAAATTCTGTGAATGCAAAGGTATCAATCTACATAGGTATATTTTTCATTTTCAAAAATTTTCAAACTGATCGGAAACGTGACACACGAGCTTTGGACTACGGAAGATGTTCAAAAATGACCGAAATTCTTCAGAAAAAGCATTTCTGCGTATCTAGATAATAAATTGTTCAATCTGCATAATAAATTGTTTGGTACTGTATTTATTCAAGTAAGATCCTTTGATTTTTTGAATCTACCATATACACGGCTTCTCACGATTTACAAGGCCAGCATTTTCAAAAAATTGAACTGTCACCTCGCATCAGCATTCTGGCAGTCCTTATTCTCGTCTCCATACTCCTCTTATTATCCACCAAACCTATCCAGCRAGTATGTTTATATTATAAAACCAGAAGCCAAAACGGATCGTAAACCGGCGGCATCCTCCCGGCAGTAGCTTTTTCGCGGACTCAATTATGCCGACACGAGTCCATCTGTTAAGAGATGAGTTGACAGGTCCGCACATGTTGCTTTTAGGGTGTCTCTTTTTTGATCGTGCCGTGCACCAGAAGGTGCGAGAAAGAGAGGGGCTTGTAAATTTTCTGCTGACTCGAGATAGCACATCGTAAATTATGGCTCGATCGGAAAACAATTATTCTAGATTATTAAAGATCAATGCCGATAACGAGTATTGGGTTACAAGTGAGCAGAAGTCTGGAAGTTATATAGATCAAAAGGTCAATTGCAGATCCGATTTCTCTGATTAGATCTTTTAGACTAGACAAATATCTAATCCAGAAGGTTTAAGCTAAATGAGCATTTGATATAAAATACCGGTCAACTAGATATACGAAAACCAATTTTTAGTTAATTTTTGTCATTTTCAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCTTCTCACGATTTACAAG</pcr_primer_p1>
		<pcr_primer_p2>GACCTGTCAACTCATCTCTTAAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GGCTTCTCACGATTTACAAGGCCAGCATTTTCAAAAAATTGAACTGTCACCTCGCATCAGCATTCTGGCAGTCCTTATTCTCGTCTCCATACTCCTCTTATTATCCACCAAACCTATCCAGCGAGTATGTTTATATTATAAAACCAGAAGCCAAAACGGATCGTAAACCGGCGGCATCCTCCCGGCAGTAGCTTTTTCGCGGACTCAATTATGCCGACACGAGTCCATCTGTTAAGAGATGAGTTGACAGGTC</canonical_amplicon>
		<polymorphic_amplicon>GGCTTCTCACGATTTACAAGGCCAGCATTTTCAAAAAATTGAACTGTCACCTCGCATCAGCATTCTGGCAGTCCTTATTCTCGTCTCCATACTCCTCTTATTATCCACCAAACCTATCCAGCRAGTATGTTTATATTATAAAACCAGAAGCCAAAACGGATCGTAAACCGGCGGCATCCTCCCGGCAGTAGCTTTTTCGCGGACTCAATTATGCCGACACGAGTCCATCTGTTAAGAGATGAGTTGACAGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12297</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>416193</contig_pos>
        <strand>+</strand>
        <context>TCCAGCRAGT[A/T]TGTTTATATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTCTCGTCTCCATACTCCTCTTATTATCCACCAAACCTATCCAGCGAGT</left_flank>
        <right_flank>TGTTTATATTATAAAACCAGAAGCCAAAACGGATCGTAAACCGGCGGCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTAGTTTTTAAGCTTCTTACCCATTTCTGAAAAAAACCCTTTTTGTCCCGTTTTTCGTATTAAAAACGTGAGAAACAGGTTTCTTTCAGAAATCAACAAATATCTGAAAAACTAGATTTTTTCAAAAATTCTGTGAATGCAAAGGTATCAATCTACATAGGTATATTTTTCATTTTCAAAAATTTTCAAACTGATCGGAAACGTGACACACGAGCTTTGGACTACGGAAGATGTTCAAAAATGACCGAAATTCTTCAGAAAAAGCATTTCTGCGTATCTAGATAATAAATTGTTCAATCTGCATAATAAATTGTTTGGTACTGTATTTATTCAAGTAAGATCCTTTGATTTTTTGAATCTACCATATACACGGCTTCTCACGATTTACAAGGCCAGCATTTTCAAAAAATTGAACTGTCACCTCGCATCAGCATTCTGGCAGTCCTTATTCTCGTCTCCATACTCCTCTTATTATCCACCAAACCTATCCAGCGAGTATGTTTATATTATAAAACCAGAAGCCAAAACGGATCGTAAACCGGCGGCATCCTCCCGGCAGTAGCTTTTTCGCGGACTCAATTATGCCGACACGAGTCCATCTGTTAAGAGATGAGTTGACAGGTCCGCACATGTTGCTTTTAGGGTGTCTCTTTTTTGATCGTGCCGTGCACCAGAAGGTGCGAGAAAGAGAGGGGCTTGTAAATTTTCTGCTGACTCGAGATAGCACATCGTAAATTATGGCTCGATCGGAAAACAATTATTCTAGATTATTAAAGATCAATGCCGATAACGAGTATTGGGTTACAAGTGAGCAGAAGTCTGGAAGTTATATAGATCAAAAGGTCAATTGCAGATCCGATTTCTCTGATTAGATCTTTTAGACTAGACAAATATCTAATCCAGAAGGTTTAAGCTAAATGAGCATTTGATATAAAATACCGGTCAACTAGATATACGAAAACCAATTTTTAGTTAATTTTTGTCATTTTCAGAAACTG</canonical>
            <polymorphic>TCCTAGTTTTTAAGCTTCTTACCCATTTCTGAAAAAAACCCTTTTTGTCCCGTTTTTCGTATTAAAAACGTGAGAAACAGGTTTCTTTCAGAAATCAACAAATATCTGAAAAACTAGATTTTTTCAAAAATTCTGTGAATGCAAAGGTATCAATCTACATAGGTATATTTTTCATTTTCAAAAATTTTCAAACTGATCGGAAACGTGACACACGAGCTTTGGACTACGGAAGATGTTCAAAAATGACCGAAATTCTTCAGAAAAAGCATTTCTGCGTATCTAGATAATAAATTGTTCAATCTGCATAATAAATTGTTTGGTACTGTATTTATTCAAGTAAGATCCTTTGATTTTTTGAATCTACCATATACACGGCTTCTCACGATTTACAAGGCCAGCATTTTCAAAAAATTGAACTGTCACCTCGCATCAGCATTCTGGCAGTCCTTATTCTCGTCTCCATACTCCTCTTATTATCCACCAAACCTATCCAGCGAGTWTGTTTATATTATAAAACCAGAAGCCAAAACGGATCGTAAACCGGCGGCATCCTCCCGGCAGTAGCTTTTTCGCGGACTCAATTATGCCGACACGAGTCCATCTGTTAAGAGATGAGTTGACAGGTCCGCACATGTTGCTTTTAGGGTGTCTCTTTTTTGATCGTGCCGTGCACCAGAAGGTGCGAGAAAGAGAGGGGCTTGTAAATTTTCTGCTGACTCGAGATAGCACATCGTAAATTATGGCTCGATCGGAAAACAATTATTCTAGATTATTAAAGATCAATGCCGATAACGAGTATTGGGTTACAAGTGAGCAGAAGTCTGGAAGTTATATAGATCAAAAGGTCAATTGCAGATCCGATTTCTCTGATTAGATCTTTTAGACTAGACAAATATCTAATCCAGAAGGTTTAAGCTAAATGAGCATTTGATATAAAATACCGGTCAACTAGATATACGAAAACCAATTTTTAGTTAATTTTTGTCATTTTCAGAAACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCTTCTCACGATTTACAAG</pcr_primer_p1>
		<pcr_primer_p2>GACCTGTCAACTCATCTCTTAAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GGCTTCTCACGATTTACAAGGCCAGCATTTTCAAAAAATTGAACTGTCACCTCGCATCAGCATTCTGGCAGTCCTTATTCTCGTCTCCATACTCCTCTTATTATCCACCAAACCTATCCAGCGAGTATGTTTATATTATAAAACCAGAAGCCAAAACGGATCGTAAACCGGCGGCATCCTCCCGGCAGTAGCTTTTTCGCGGACTCAATTATGCCGACACGAGTCCATCTGTTAAGAGATGAGTTGACAGGTC</canonical_amplicon>
		<polymorphic_amplicon>GGCTTCTCACGATTTACAAGGCCAGCATTTTCAAAAAATTGAACTGTCACCTCGCATCAGCATTCTGGCAGTCCTTATTCTCGTCTCCATACTCCTCTTATTATCCACCAAACCTATCCAGCGAGTWTGTTTATATTATAAAACCAGAAGCCAAAACGGATCGTAAACCGGCGGCATCCTCCCGGCAGTAGCTTTTTCGCGGACTCAATTATGCCGACACGAGTCCATCTGTTAAGAGATGAGTTGACAGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12298</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>418281</contig_pos>
        <strand>+</strand>
        <context>ACAATCGCCC[A/G]CTTCCCTCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACAACCTCGGCGACAACTTCACTGTGGCATCTGGAAAAAACAATCGCCC</left_flank>
        <right_flank>CTTCCCTCTTGGCTTATGATCCGCGATCAGATTCTTACTGGTATCCCGAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGGAAATTTTTCTATTAATTCATCATCGAAATTTAGAAACATACCAGGTGTCTGTTAGGCACCACTTGCACTCTCCATCAAACACTTACTATTTCGTACGGTTTCGATTTAGGCTCCGCCCCTCCGGCCGGGTCGTCCCTTCTTCTCCCCGCCTTCTTCTTCTTCTTCTCGCCCCGGTGTTCACTTCTTCTCGTGCAGCACACGACCCACTTTCTCTCCATCTCCTCTGCTTCCCCCCACTCCTTTTCTCTATAGGAGGATAGGAGGACCGTACGGATTTTAGGCCTAAATTTTTTGATCTTCAGCGCTTCTCAGCTTTCCTGACCCCTACAAAGAAGTTTTTTTTTCAGAAACAATGCGTATCCCATTCATAGTCTTGGGGCTGCTGCTGGTGACTACGGTATTTGCCAATGACTCGACTCGCGTTTTCATCGGAGAGCTCTTCGAGCACAACCTCGGCGACAACTTCACTGTGGCATCTGGAAAAAACAATCGCCCGCTTCCCTCTTGGCTTATGATCCGCGATCAGATTCTTACTGGTATCCCGACCGAGAACGATGTTGGCAAGCACACTGTTATGGTGAGTCAGAAGGCGGGAAGGGAAAACGTAGAAATAGAAGGAGGAGATAGTATTTGGTAGTAGGAGACGTAGATAGTCCATAGTCCATTTGGTGTGATGAATCAGGTAATAATGGGTAGCCTGGTATCGTAAAAGCAACAAAAATTGTTTGAAACAACTTCCAAAGGCCAGGCAGCTGCAGCAAGCTATTTTTTCTCAAATTTTTCGAGCCGCCAAATTGATAGATGAGAGAAATTGTGGGGAGCGCGTGAGTGGGGGATTCACTATGTTGTTGTAACATTGAGTTTATAGATCACATCGAGGAGACGCAAGCCCACTTACCTGTACCTGAATGTCGAGGAGGAGGTTATCAGCCCATGTGGAACCATAAACAACACCTTCTGGATGGAGACTTATCATGAGCAGGAAGCAACTCTCGC</canonical>
            <polymorphic>AGGGAAATTTTTCTATTAATTCATCATCGAAATTTAGAAACATACCAGGTGTCTGTTAGGCACCACTTGCACTCTCCATCAAACACTTACTATTTCGTACGGTTTCGATTTAGGCTCCGCCCCTCCGGCCGGGTCGTCCCTTCTTCTCCCCGCCTTCTTCTTCTTCTTCTCGCCCCGGTGTTCACTTCTTCTCGTGCAGCACACGACCCACTTTCTCTCCATCTCCTCTGCTTCCCCCCACTCCTTTTCTCTATAGGAGGATAGGAGGACCGTACGGATTTTAGGCCTAAATTTTTTGATCTTCAGCGCTTCTCAGCTTTCCTGACCCCTACAAAGAAGTTTTTTTTTCAGAAACAATGCGTATCCCATTCATAGTCTTGGGGCTGCTGCTGGTGACTACGGTATTTGCCAATGACTCGACTCGCGTTTTCATCGGAGAGCTCTTCGAGCACAACCTCGGCGACAACTTCACTGTGGCATCTGGAAAAAACAATCGCCCRCTTCCCTCTTGGCTTATGATCCGCGATCAGATTCTTACTGGTATCCCGACCGAGAACGATGTTGGCAAGCACACTGTTATGGTGAGTCAGAAGGCGGGAAGGGAAAACGTAGAAATAGAAGGAGGAGATAGTATTTGGTAGTAGGAGACGTAGATAGTCCATAGTCCATTTGGTGTGATGAATCAGGTAATAATGGGTAGCCTGGTATCGTAAAAGCAACAAAAATTGTTTGAAACAACTTCCAAAGGCCAGGCAGCTGCAGCAAGCTATTTTTTCTCAAATTTTTCGAGCCGCCAAATTGATAGATGAGAGAAATTGTGGGGAGCGCGTGAGTGGGGGATTCACTATGTTGTTGTAACATTGAGTTTATAGATCACATCGAGGAGACGCAAGCCCACTTACCTGTACCTGAATGTCGAGGAGGAGGTTATCAGCCCATGTGGAACCATAAACAACACCTTCTGGATGGAGACTTATCATGAGCAGGAAGCAACTCTCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>348 209 198 117 72 33 23</canonical_bands>
                <polymorphic_bands>371 209 198 117 72 33</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 197 127 109 69</canonical_bands>
                <polymorphic_bands>567 197 127 109</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAGAAACAATGCGTATC</pcr_primer_p1>
		<pcr_primer_p2>CCTTCTGACTCACCATAACAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAGAAACAATGCGTATCCCATTCATAGTCTTGGGGCTGCTGCTGGTGACTACGGTATTTGCCAATGACTCGACTCGCGTTTTCATCGGAGAGCTCTTCGAGCACAACCTCGGCGACAACTTCACTGTGGCATCTGGAAAAAACAATCGCCCGCTTCCCTCTTGGCTTATGATCCGCGATCAGATTCTTACTGGTATCCCGACCGAGAACGATGTTGGCAAGCACACTGTTATGGTGAGTCAGAAGG</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAGAAACAATGCGTATCCCATTCATAGTCTTGGGGCTGCTGCTGGTGACTACGGTATTTGCCAATGACTCGACTCGCGTTTTCATCGGAGAGCTCTTCGAGCACAACCTCGGCGACAACTTCACTGTGGCATCTGGAAAAAACAATCGCCCRCTTCCCTCTTGGCTTATGATCCGCGATCAGATTCTTACTGGTATCCCGACCGAGAACGATGTTGGCAAGCACACTGTTATGGTGAGTCAGAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12299</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>418269</contig_pos>
        <strand>+</strand>
        <context>CATCTGGMAA[A/G]AACAATCGCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGCTCTTCGAGCACAACCTCGGCGACAACTTCACTGTGGCATCTGGAAA</left_flank>
        <right_flank>AACAATCGCCCGCTTCCCTCTTGGCTTATGATCCGCGATCAGATTCTTAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCCAAAGAAAAAGGGAAATTTTTCTATTAATTCATCATCGAAATTTAGAAACATACCAGGTGTCTGTTAGGCACCACTTGCACTCTCCATCAAACACTTACTATTTCGTACGGTTTCGATTTAGGCTCCGCCCCTCCGGCCGGGTCGTCCCTTCTTCTCCCCGCCTTCTTCTTCTTCTTCTCGCCCCGGTGTTCACTTCTTCTCGTGCAGCACACGACCCACTTTCTCTCCATCTCCTCTGCTTCCCCCCACTCCTTTTCTCTATAGGAGGATAGGAGGACCGTACGGATTTTAGGCCTAAATTTTTTGATCTTCAGCGCTTCTCAGCTTTCCTGACCCCTACAAAGAAGTTTTTTTTTCAGAAACAATGCGTATCCCATTCATAGTCTTGGGGCTGCTGCTGGTGACTACGGTATTTGCCAATGACTCGACTCGCGTTTTCATCGGAGAGCTCTTCGAGCACAACCTCGGCGACAACTTCACTGTGGCATCTGGAAAAAACAATCGCCCGCTTCCCTCTTGGCTTATGATCCGCGATCAGATTCTTACTGGTATCCCGACCGAGAACGATGTTGGCAAGCACACTGTTATGGTGAGTCAGAAGGCGGGAAGGGAAAACGTAGAAATAGAAGGAGGAGATAGTATTTGGTAGTAGGAGACGTAGATAGTCCATAGTCCATTTGGTGTGATGAATCAGGTAATAATGGGTAGCCTGGTATCGTAAAAGCAACAAAAATTGTTTGAAACAACTTCCAAAGGCCAGGCAGCTGCAGCAAGCTATTTTTTCTCAAATTTTTCGAGCCGCCAAATTGATAGATGAGAGAAATTGTGGGGAGCGCGTGAGTGGGGGATTCACTATGTTGTTGTAACATTGAGTTTATAGATCACATCGAGGAGACGCAAGCCCACTTACCTGTACCTGAATGTCGAGGAGGAGGTTATCAGCCCATGTGGAACCATAAACAACACCTTCTGGATGGAGACTTATCATGAGCAGGA</canonical>
            <polymorphic>ACCCAAAGAAAAAGGGAAATTTTTCTATTAATTCATCATCGAAATTTAGAAACATACCAGGTGTCTGTTAGGCACCACTTGCACTCTCCATCAAACACTTACTATTTCGTACGGTTTCGATTTAGGCTCCGCCCCTCCGGCCGGGTCGTCCCTTCTTCTCCCCGCCTTCTTCTTCTTCTTCTCGCCCCGGTGTTCACTTCTTCTCGTGCAGCACACGACCCACTTTCTCTCCATCTCCTCTGCTTCCCCCCACTCCTTTTCTCTATAGGAGGATAGGAGGACCGTACGGATTTTAGGCCTAAATTTTTTGATCTTCAGCGCTTCTCAGCTTTCCTGACCCCTACAAAGAAGTTTTTTTTTCAGAAACAATGCGTATCCCATTCATAGTCTTGGGGCTGCTGCTGGTGACTACGGTATTTGCCAATGACTCGACTCGCGTTTTCATCGGAGAGCTCTTCGAGCACAACCTCGGCGACAACTTCACTGTGGCATCTGGAAARAACAATCGCCCGCTTCCCTCTTGGCTTATGATCCGCGATCAGATTCTTACTGGTATCCCGACCGAGAACGATGTTGGCAAGCACACTGTTATGGTGAGTCAGAAGGCGGGAAGGGAAAACGTAGAAATAGAAGGAGGAGATAGTATTTGGTAGTAGGAGACGTAGATAGTCCATAGTCCATTTGGTGTGATGAATCAGGTAATAATGGGTAGCCTGGTATCGTAAAAGCAACAAAAATTGTTTGAAACAACTTCCAAAGGCCAGGCAGCTGCAGCAAGCTATTTTTTCTCAAATTTTTCGAGCCGCCAAATTGATAGATGAGAGAAATTGTGGGGAGCGCGTGAGTGGGGGATTCACTATGTTGTTGTAACATTGAGTTTATAGATCACATCGAGGAGACGCAAGCCCACTTACCTGTACCTGAATGTCGAGGAGGAGGTTATCAGCCCATGTGGAACCATAAACAACACCTTCTGGATGGAGACTTATCATGAGCAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAGAAACAATGCGTATC</pcr_primer_p1>
		<pcr_primer_p2>CCTTCTGACTCACCATAACAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAGAAACAATGCGTATCCCATTCATAGTCTTGGGGCTGCTGCTGGTGACTACGGTATTTGCCAATGACTCGACTCGCGTTTTCATCGGAGAGCTCTTCGAGCACAACCTCGGCGACAACTTCACTGTGGCATCTGGAAAAAACAATCGCCCGCTTCCCTCTTGGCTTATGATCCGCGATCAGATTCTTACTGGTATCCCGACCGAGAACGATGTTGGCAAGCACACTGTTATGGTGAGTCAGAAGG</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAGAAACAATGCGTATCCCATTCATAGTCTTGGGGCTGCTGCTGGTGACTACGGTATTTGCCAATGACTCGACTCGCGTTTTCATCGGAGAGCTCTTCGAGCACAACCTCGGCGACAACTTCACTGTGGCATCTGGAAARAACAATCGCCCGCTTCCCTCTTGGCTTATGATCCGCGATCAGATTCTTACTGGTATCCCGACCGAGAACGATGTTGGCAAGCACACTGTTATGGTGAGTCAGAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12300</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>418266</contig_pos>
        <strand>+</strand>
        <context>TGGCATCTGG[A/C]AARAACAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGAGAGCTCTTCGAGCACAACCTCGGCGACAACTTCACTGTGGCATCTGG</left_flank>
        <right_flank>AAAAACAATCGCCCGCTTCCCTCTTGGCTTATGATCCGCGATCAGATTCT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGACCCAAAGAAAAAGGGAAATTTTTCTATTAATTCATCATCGAAATTTAGAAACATACCAGGTGTCTGTTAGGCACCACTTGCACTCTCCATCAAACACTTACTATTTCGTACGGTTTCGATTTAGGCTCCGCCCCTCCGGCCGGGTCGTCCCTTCTTCTCCCCGCCTTCTTCTTCTTCTTCTCGCCCCGGTGTTCACTTCTTCTCGTGCAGCACACGACCCACTTTCTCTCCATCTCCTCTGCTTCCCCCCACTCCTTTTCTCTATAGGAGGATAGGAGGACCGTACGGATTTTAGGCCTAAATTTTTTGATCTTCAGCGCTTCTCAGCTTTCCTGACCCCTACAAAGAAGTTTTTTTTTCAGAAACAATGCGTATCCCATTCATAGTCTTGGGGCTGCTGCTGGTGACTACGGTATTTGCCAATGACTCGACTCGCGTTTTCATCGGAGAGCTCTTCGAGCACAACCTCGGCGACAACTTCACTGTGGCATCTGGAAAAAACAATCGCCCGCTTCCCTCTTGGCTTATGATCCGCGATCAGATTCTTACTGGTATCCCGACCGAGAACGATGTTGGCAAGCACACTGTTATGGTGAGTCAGAAGGCGGGAAGGGAAAACGTAGAAATAGAAGGAGGAGATAGTATTTGGTAGTAGGAGACGTAGATAGTCCATAGTCCATTTGGTGTGATGAATCAGGTAATAATGGGTAGCCTGGTATCGTAAAAGCAACAAAAATTGTTTGAAACAACTTCCAAAGGCCAGGCAGCTGCAGCAAGCTATTTTTTCTCAAATTTTTCGAGCCGCCAAATTGATAGATGAGAGAAATTGTGGGGAGCGCGTGAGTGGGGGATTCACTATGTTGTTGTAACATTGAGTTTATAGATCACATCGAGGAGACGCAAGCCCACTTACCTGTACCTGAATGTCGAGGAGGAGGTTATCAGCCCATGTGGAACCATAAACAACACCTTCTGGATGGAGACTTATCATGAGCA</canonical>
            <polymorphic>AAGACCCAAAGAAAAAGGGAAATTTTTCTATTAATTCATCATCGAAATTTAGAAACATACCAGGTGTCTGTTAGGCACCACTTGCACTCTCCATCAAACACTTACTATTTCGTACGGTTTCGATTTAGGCTCCGCCCCTCCGGCCGGGTCGTCCCTTCTTCTCCCCGCCTTCTTCTTCTTCTTCTCGCCCCGGTGTTCACTTCTTCTCGTGCAGCACACGACCCACTTTCTCTCCATCTCCTCTGCTTCCCCCCACTCCTTTTCTCTATAGGAGGATAGGAGGACCGTACGGATTTTAGGCCTAAATTTTTTGATCTTCAGCGCTTCTCAGCTTTCCTGACCCCTACAAAGAAGTTTTTTTTTCAGAAACAATGCGTATCCCATTCATAGTCTTGGGGCTGCTGCTGGTGACTACGGTATTTGCCAATGACTCGACTCGCGTTTTCATCGGAGAGCTCTTCGAGCACAACCTCGGCGACAACTTCACTGTGGCATCTGGMAAAAACAATCGCCCGCTTCCCTCTTGGCTTATGATCCGCGATCAGATTCTTACTGGTATCCCGACCGAGAACGATGTTGGCAAGCACACTGTTATGGTGAGTCAGAAGGCGGGAAGGGAAAACGTAGAAATAGAAGGAGGAGATAGTATTTGGTAGTAGGAGACGTAGATAGTCCATAGTCCATTTGGTGTGATGAATCAGGTAATAATGGGTAGCCTGGTATCGTAAAAGCAACAAAAATTGTTTGAAACAACTTCCAAAGGCCAGGCAGCTGCAGCAAGCTATTTTTTCTCAAATTTTTCGAGCCGCCAAATTGATAGATGAGAGAAATTGTGGGGAGCGCGTGAGTGGGGGATTCACTATGTTGTTGTAACATTGAGTTTATAGATCACATCGAGGAGACGCAAGCCCACTTACCTGTACCTGAATGTCGAGGAGGAGGTTATCAGCCCATGTGGAACCATAAACAACACCTTCTGGATGGAGACTTATCATGAGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>417 336 160 64 16 7</canonical_bands>
                <polymorphic_bands>417 336 224 16 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAGAAACAATGCGTATC</pcr_primer_p1>
		<pcr_primer_p2>CCTTCTGACTCACCATAACAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAGAAACAATGCGTATCCCATTCATAGTCTTGGGGCTGCTGCTGGTGACTACGGTATTTGCCAATGACTCGACTCGCGTTTTCATCGGAGAGCTCTTCGAGCACAACCTCGGCGACAACTTCACTGTGGCATCTGGAAAAAACAATCGCCCGCTTCCCTCTTGGCTTATGATCCGCGATCAGATTCTTACTGGTATCCCGACCGAGAACGATGTTGGCAAGCACACTGTTATGGTGAGTCAGAAGG</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAGAAACAATGCGTATCCCATTCATAGTCTTGGGGCTGCTGCTGGTGACTACGGTATTTGCCAATGACTCGACTCGCGTTTTCATCGGAGAGCTCTTCGAGCACAACCTCGGCGACAACTTCACTGTGGCATCTGGMAAAAACAATCGCCCGCTTCCCTCTTGGCTTATGATCCGCGATCAGATTCTTACTGGTATCCCGACCGAGAACGATGTTGGCAAGCACACTGTTATGGTGAGTCAGAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12301</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>418099</contig_pos>
        <strand>+</strand>
        <context>GCTTCTCAGC[C/T]TTCCTGACCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACCGTACGGATTTTAGGCCTAAATTTTTTGATCTTCAGCGCTTCTCAGC</left_flank>
        <right_flank>TTCCTGACCCCTACAAAGAAGTTTTTTTTTCAGAAACAATGCGTATCCCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTAGAGCCTGCAGAAACATCTGGCAACAGTTTCGAAGCAAACAAAGTTCAGTTCTCTTATCTTTTCTCTCTTTTTTTTTGTTTTTTTTTCGACATTTTGCTCTACTATCCATCGTCTTCTTCCCTCCAATCTACTCCAACAGATTTTTCTTTAGCTCTTTAGAGAAAAGACCCAAAGAAAAAGGGAAATTTTTCTATTAATTCATCATCGAAATTTAGAAACATACCAGGTGTCTGTTAGGCACCACTTGCACTCTCCATCAAACACTTACTATTTCGTACGGTTTCGATTTAGGCTCCGCCCCTCCGGCCGGGTCGTCCCTTCTTCTCCCCGCCTTCTTCTTCTTCTTCTCGCCCCGGTGTTCACTTCTTCTCGTGCAGCACACGACCCACTTTCTCTCCATCTCCTCTGCTTCCCCCCACTCCTTTTCTCTATAGGAGGATAGGAGGACCGTACGGATTTTAGGCCTAAATTTTTTGATCTTCAGCGCTTCTCAGCTTTCCTGACCCCTACAAAGAAGTTTTTTTTTCAGAAACAATGCGTATCCCATTCATAGTCTTGGGGCTGCTGCTGGTGACTACGGTATTTGCCAATGACTCGACTCGCGTTTTCATCGGAGAGCTCTTCGAGCACAACCTCGGCGACAACTTCACTGTGGCATCTGGAAAAAACAATCGCCCGCTTCCCTCTTGGCTTATGATCCGCGATCAGATTCTTACTGGTATCCCGACCGAGAACGATGTTGGCAAGCACACTGTTATGGTGAGTCAGAAGGCGGGAAGGGAAAACGTAGAAATAGAAGGAGGAGATAGTATTTGGTAGTAGGAGACGTAGATAGTCCATAGTCCATTTGGTGTGATGAATCAGGTAATAATGGGTAGCCTGGTATCGTAAAAGCAACAAAAATTGTTTGAAACAACTTCCAAAGGCCAGGCAGCTGCAGCAAGCTATTTTTTCTCAAATTTTTCGAGCCGCCAAATTGATAGATGAGAGAAATTG</canonical>
            <polymorphic>GGTAGAGCCTGCAGAAACATCTGGCAACAGTTTCGAAGCAAACAAAGTTCAGTTCTCTTATCTTTTCTCTCTTTTTTTTTGTTTTTTTTTCGACATTTTGCTCTACTATCCATCGTCTTCTTCCCTCCAATCTACTCCAACAGATTTTTCTTTAGCTCTTTAGAGAAAAGACCCAAAGAAAAAGGGAAATTTTTCTATTAATTCATCATCGAAATTTAGAAACATACCAGGTGTCTGTTAGGCACCACTTGCACTCTCCATCAAACACTTACTATTTCGTACGGTTTCGATTTAGGCTCCGCCCCTCCGGCCGGGTCGTCCCTTCTTCTCCCCGCCTTCTTCTTCTTCTTCTCGCCCCGGTGTTCACTTCTTCTCGTGCAGCACACGACCCACTTTCTCTCCATCTCCTCTGCTTCCCCCCACTCCTTTTCTCTATAGGAGGATAGGAGGACCGTACGGATTTTAGGCCTAAATTTTTTGATCTTCAGCGCTTCTCAGCYTTCCTGACCCCTACAAAGAAGTTTTTTTTTCAGAAACAATGCGTATCCCATTCATAGTCTTGGGGCTGCTGCTGGTGACTACGGTATTTGCCAATGACTCGACTCGCGTTTTCATCGGAGAGCTCTTCGAGCACAACCTCGGCGACAACTTCACTGTGGCATCTGGAAAAAACAATCGCCCGCTTCCCTCTTGGCTTATGATCCGCGATCAGATTCTTACTGGTATCCCGACCGAGAACGATGTTGGCAAGCACACTGTTATGGTGAGTCAGAAGGCGGGAAGGGAAAACGTAGAAATAGAAGGAGGAGATAGTATTTGGTAGTAGGAGACGTAGATAGTCCATAGTCCATTTGGTGTGATGAATCAGGTAATAATGGGTAGCCTGGTATCGTAAAAGCAACAAAAATTGTTTGAAACAACTTCCAAAGGCCAGGCAGCTGCAGCAAGCTATTTTTTCTCAAATTTTTCGAGCCGCCAAATTGATAGATGAGAGAAATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>343 316 155 124 52 10</canonical_bands>
                <polymorphic_bands>467 316 155 52 10</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>188 157 148 141 72 67 57 48 31 28 24 14 10 8 7</canonical_bands>
                <polymorphic_bands>188 157 148 141 98 72 57 48 28 24 14 10 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTCTATAGGAGGATAGGAGGA</pcr_primer_p1>
		<pcr_primer_p2>AGATGCCACAGTGAAGTTGT</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TTCTCTATAGGAGGATAGGAGGACCGTACGGATTTTAGGCCTAAATTTTTTGATCTTCAGCGCTTCTCAGCTTTCCTGACCCCTACAAAGAAGTTTTTTTTTCAGAAACAATGCGTATCCCATTCATAGTCTTGGGGCTGCTGCTGGTGACTACGGTATTTGCCAATGACTCGACTCGCGTTTTCATCGGAGAGCTCTTCGAGCACAACCTCGGCGACAACTTCACTGTGGCATCT</canonical_amplicon>
		<polymorphic_amplicon>TTCTCTATAGGAGGATAGGAGGACCGTACGGATTTTAGGCCTAAATTTTTTGATCTTCAGCGCTTCTCAGCYTTCCTGACCCCTACAAAGAAGTTTTTTTTTCAGAAACAATGCGTATCCCATTCATAGTCTTGGGGCTGCTGCTGGTGACTACGGTATTTGCCAATGACTCGACTCGCGTTTTCATCGGAGAGCTCTTCGAGCACAACCTCGGCGACAACTTCACTGTGGCATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12302</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>418024</contig_pos>
        <strand>+</strand>
        <context>TCCCCCCACT[C/T]CTTTTCTCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTGCAGCACACGACCCACTTTCTCTCCATCTCCTCTGCTTCCCCCCACT</left_flank>
        <right_flank>CTTTTCTCTATAGGAGGATAGGAGGACCGTACGGATTTTAGGCCTAAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCGCTACACCACTTTCGTTCCAATGAAGCATGATGATTTTTTCTGCTTCATGCTAAATGTAAGATGGGCATGGGTAGAGCCTGCAGAAACATCTGGCAACAGTTTCGAAGCAAACAAAGTTCAGTTCTCTTATCTTTTCTCTCTTTTTTTTTGTTTTTTTTTCGACATTTTGCTCTACTATCCATCGTCTTCTTCCCTCCAATCTACTCCAACAGATTTTTCTTTAGCTCTTTAGAGAAAAGACCCAAAGAAAAAGGGAAATTTTTCTATTAATTCATCATCGAAATTTAGAAACATACCAGGTGTCTGTTAGGCACCACTTGCACTCTCCATCAAACACTTACTATTTCGTACGGTTTCGATTTAGGCTCCGCCCCTCCGGCCGGGTCGTCCCTTCTTCTCCCCGCCTTCTTCTTCTTCTTCTCGCCCCGGTGTTCACTTCTTCTCGTGCAGCACACGACCCACTTTCTCTCCATCTCCTCTGCTTCCCCCCACTCCTTTTCTCTATAGGAGGATAGGAGGACCGTACGGATTTTAGGCCTAAATTTTTTGATCTTCAGCGCTTCTCAGCTTTCCTGACCCCTACAAAGAAGTTTTTTTTTCAGAAACAATGCGTATCCCATTCATAGTCTTGGGGCTGCTGCTGGTGACTACGGTATTTGCCAATGACTCGACTCGCGTTTTCATCGGAGAGCTCTTCGAGCACAACCTCGGCGACAACTTCACTGTGGCATCTGGAAAAAACAATCGCCCGCTTCCCTCTTGGCTTATGATCCGCGATCAGATTCTTACTGGTATCCCGACCGAGAACGATGTTGGCAAGCACACTGTTATGGTGAGTCAGAAGGCGGGAAGGGAAAACGTAGAAATAGAAGGAGGAGATAGTATTTGGTAGTAGGAGACGTAGATAGTCCATAGTCCATTTGGTGTGATGAATCAGGTAATAATGGGTAGCCTGGTATCGTAAAAGCAACAAAAATTGTTTGAAACAACTTCC</canonical>
            <polymorphic>TTTCCGCTACACCACTTTCGTTCCAATGAAGCATGATGATTTTTTCTGCTTCATGCTAAATGTAAGATGGGCATGGGTAGAGCCTGCAGAAACATCTGGCAACAGTTTCGAAGCAAACAAAGTTCAGTTCTCTTATCTTTTCTCTCTTTTTTTTTGTTTTTTTTTCGACATTTTGCTCTACTATCCATCGTCTTCTTCCCTCCAATCTACTCCAACAGATTTTTCTTTAGCTCTTTAGAGAAAAGACCCAAAGAAAAAGGGAAATTTTTCTATTAATTCATCATCGAAATTTAGAAACATACCAGGTGTCTGTTAGGCACCACTTGCACTCTCCATCAAACACTTACTATTTCGTACGGTTTCGATTTAGGCTCCGCCCCTCCGGCCGGGTCGTCCCTTCTTCTCCCCGCCTTCTTCTTCTTCTTCTCGCCCCGGTGTTCACTTCTTCTCGTGCAGCACACGACCCACTTTCTCTCCATCTCCTCTGCTTCCCCCCACTYCTTTTCTCTATAGGAGGATAGGAGGACCGTACGGATTTTAGGCCTAAATTTTTTGATCTTCAGCGCTTCTCAGCTTTCCTGACCCCTACAAAGAAGTTTTTTTTTCAGAAACAATGCGTATCCCATTCATAGTCTTGGGGCTGCTGCTGGTGACTACGGTATTTGCCAATGACTCGACTCGCGTTTTCATCGGAGAGCTCTTCGAGCACAACCTCGGCGACAACTTCACTGTGGCATCTGGAAAAAACAATCGCCCGCTTCCCTCTTGGCTTATGATCCGCGATCAGATTCTTACTGGTATCCCGACCGAGAACGATGTTGGCAAGCACACTGTTATGGTGAGTCAGAAGGCGGGAAGGGAAAACGTAGAAATAGAAGGAGGAGATAGTATTTGGTAGTAGGAGACGTAGATAGTCCATAGTCCATTTGGTGTGATGAATCAGGTAATAATGGGTAGCCTGGTATCGTAAAAGCAACAAAAATTGTTTGAAACAACTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGTACGGTTTCGATTTAG</pcr_primer_p1>
		<pcr_primer_p2>AAAACTTCTTTGTAGGGGTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCGTACGGTTTCGATTTAGGCTCCGCCCCTCCGGCCGGGTCGTCCCTTCTTCTCCCCGCCTTCTTCTTCTTCTTCTCGCCCCGGTGTTCACTTCTTCTCGTGCAGCACACGACCCACTTTCTCTCCATCTCCTCTGCTTCCCCCCACTCCTTTTCTCTATAGGAGGATAGGAGGACCGTACGGATTTTAGGCCTAAATTTTTTGATCTTCAGCGCTTCTCAGCTTTCCTGACCCCTACAAAGAAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTCGTACGGTTTCGATTTAGGCTCCGCCCCTCCGGCCGGGTCGTCCCTTCTTCTCCCCGCCTTCTTCTTCTTCTTCTCGCCCCGGTGTTCACTTCTTCTCGTGCAGCACACGACCCACTTTCTCTCCATCTCCTCTGCTTCCCCCCACTYCTTTTCTCTATAGGAGGATAGGAGGACCGTACGGATTTTAGGCCTAAATTTTTTGATCTTCAGCGCTTCTCAGCTTTCCTGACCCCTACAAAGAAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12303</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>417989</contig_pos>
        <strand>+</strand>
        <context>AGCACACGAC[C/T]CACTTTCTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTTCTTCTTCTCGCCCCGGTGTTCACTTCTTCTCGTGCAGCACACGAC</left_flank>
        <right_flank>CACTTTCTCTCCATCTCCTCTGCTTCCCCCCACTCCTTTTCTCTATAGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTTTACTATGTGATTCTTCAGTCGTTCCCTTGTTTCCGCTACACCACTTTCGTTCCAATGAAGCATGATGATTTTTTCTGCTTCATGCTAAATGTAAGATGGGCATGGGTAGAGCCTGCAGAAACATCTGGCAACAGTTTCGAAGCAAACAAAGTTCAGTTCTCTTATCTTTTCTCTCTTTTTTTTTGTTTTTTTTTCGACATTTTGCTCTACTATCCATCGTCTTCTTCCCTCCAATCTACTCCAACAGATTTTTCTTTAGCTCTTTAGAGAAAAGACCCAAAGAAAAAGGGAAATTTTTCTATTAATTCATCATCGAAATTTAGAAACATACCAGGTGTCTGTTAGGCACCACTTGCACTCTCCATCAAACACTTACTATTTCGTACGGTTTCGATTTAGGCTCCGCCCCTCCGGCCGGGTCGTCCCTTCTTCTCCCCGCCTTCTTCTTCTTCTTCTCGCCCCGGTGTTCACTTCTTCTCGTGCAGCACACGACCCACTTTCTCTCCATCTCCTCTGCTTCCCCCCACTCCTTTTCTCTATAGGAGGATAGGAGGACCGTACGGATTTTAGGCCTAAATTTTTTGATCTTCAGCGCTTCTCAGCTTTCCTGACCCCTACAAAGAAGTTTTTTTTTCAGAAACAATGCGTATCCCATTCATAGTCTTGGGGCTGCTGCTGGTGACTACGGTATTTGCCAATGACTCGACTCGCGTTTTCATCGGAGAGCTCTTCGAGCACAACCTCGGCGACAACTTCACTGTGGCATCTGGAAAAAACAATCGCCCGCTTCCCTCTTGGCTTATGATCCGCGATCAGATTCTTACTGGTATCCCGACCGAGAACGATGTTGGCAAGCACACTGTTATGGTGAGTCAGAAGGCGGGAAGGGAAAACGTAGAAATAGAAGGAGGAGATAGTATTTGGTAGTAGGAGACGTAGATAGTCCATAGTCCATTTGGTGTGATGAATCAGGTAATAATGGGTAGCCTGGTAT</canonical>
            <polymorphic>GAATTTTACTATGTGATTCTTCAGTCGTTCCCTTGTTTCCGCTACACCACTTTCGTTCCAATGAAGCATGATGATTTTTTCTGCTTCATGCTAAATGTAAGATGGGCATGGGTAGAGCCTGCAGAAACATCTGGCAACAGTTTCGAAGCAAACAAAGTTCAGTTCTCTTATCTTTTCTCTCTTTTTTTTTGTTTTTTTTTCGACATTTTGCTCTACTATCCATCGTCTTCTTCCCTCCAATCTACTCCAACAGATTTTTCTTTAGCTCTTTAGAGAAAAGACCCAAAGAAAAAGGGAAATTTTTCTATTAATTCATCATCGAAATTTAGAAACATACCAGGTGTCTGTTAGGCACCACTTGCACTCTCCATCAAACACTTACTATTTCGTACGGTTTCGATTTAGGCTCCGCCCCTCCGGCCGGGTCGTCCCTTCTTCTCCCCGCCTTCTTCTTCTTCTTCTCGCCCCGGTGTTCACTTCTTCTCGTGCAGCACACGACYCACTTTCTCTCCATCTCCTCTGCTTCCCCCCACTCCTTTTCTCTATAGGAGGATAGGAGGACCGTACGGATTTTAGGCCTAAATTTTTTGATCTTCAGCGCTTCTCAGCTTTCCTGACCCCTACAAAGAAGTTTTTTTTTCAGAAACAATGCGTATCCCATTCATAGTCTTGGGGCTGCTGCTGGTGACTACGGTATTTGCCAATGACTCGACTCGCGTTTTCATCGGAGAGCTCTTCGAGCACAACCTCGGCGACAACTTCACTGTGGCATCTGGAAAAAACAATCGCCCGCTTCCCTCTTGGCTTATGATCCGCGATCAGATTCTTACTGGTATCCCGACCGAGAACGATGTTGGCAAGCACACTGTTATGGTGAGTCAGAAGGCGGGAAGGGAAAACGTAGAAATAGAAGGAGGAGATAGTATTTGGTAGTAGGAGACGTAGATAGTCCATAGTCCATTTGGTGTGATGAATCAGGTAATAATGGGTAGCCTGGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACATACCAGGTGTCTGTTAG</pcr_primer_p1>
		<pcr_primer_p2>CTAAAATCCGTACGGTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAACATACCAGGTGTCTGTTAGGCACCACTTGCACTCTCCATCAAACACTTACTATTTCGTACGGTTTCGATTTAGGCTCCGCCCCTCCGGCCGGGTCGTCCCTTCTTCTCCCCGCCTTCTTCTTCTTCTTCTCGCCCCGGTGTTCACTTCTTCTCGTGCAGCACACGACCCACTTTCTCTCCATCTCCTCTGCTTCCCCCCACTCCTTTTCTCTATAGGAGGATAGGAGGACCGTACGGATTTTAG</canonical_amplicon>
		<polymorphic_amplicon>GAAACATACCAGGTGTCTGTTAGGCACCACTTGCACTCTCCATCAAACACTTACTATTTCGTACGGTTTCGATTTAGGCTCCGCCCCTCCGGCCGGGTCGTCCCTTCTTCTCCCCGCCTTCTTCTTCTTCTTCTCGCCCCGGTGTTCACTTCTTCTCGTGCAGCACACGACYCACTTTCTCTCCATCTCCTCTGCTTCCCCCCACTCCTTTTCTCTATAGGAGGATAGGAGGACCGTACGGATTTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12304</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>418911</contig_pos>
        <strand>+</strand>
        <context>AGGAAGCAGT[A/T]AATGGAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACTTCAGTTTGATCAACCGTAATCTCGAGGAAATCGGTCAGGAAGCAGT</left_flank>
        <right_flank>AATGGAAATTACATGGCTATCTGGAGAGTGGCTTGTGAGGATTTCGACGA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATTTGGTAGTAGGAGACGTAGATAGTCCATAGTCCATTTGGTGTGATGAATCAGGTAATAATGGGTAGCCTGGTATCGTAAAAGCAACAAAAATTGTTTGAAACAACTTCCAAAGGCCAGGCAGCTGCAGCAAGCTATTTTTTCTCAAATTTTTCGAGCCGCCAAATTGATAGATGAGAGAAATTGTGGGGAGCGCGTGAGTGGGGGATTCACTATGTTGTTGTAACATTGAGTTTATAGATCACATCGAGGAGACGCAAGCCCACTTACCTGTACCTGAATGTCGAGGAGGAGGTTATCAGCCCATGTGGAACCATAAACAACACCTTCTGGATGGAGACTTATCATGAGCAGGAAGCAACTCTCGCCAACCGTATTGAGACTGCTTTAGCTATGAACGAGCTGGAATTGGATCCAAATGTGAAGACCGTCCGTGTCTACTCGTACAACTTCAGTTTGATCAACCGTAATCTCGAGGAAATCGGTCAGGAAGCAGTTAATGGAAATTACATGGCTATCTGGAGAGTGGCTTGTGAGGATTTCGACGAGGCTGTCAACTACATGGACGAATTTGTCGATCGGGAGGATGTCGACTACGACTCTCTCAAGCTCGCTAAGGGATTCTTCAAGAAAGGAGTCGCTCCAACCCCAACTCCAGAGCCTGTCGAGGAGGATGAGACCACCACCGAGTACCTTCGTACAACCACTGAGTTGATCCGTACCACCAGAAGAGTATTTAATGACAACAAGCCAATTCTTCTGAACCGACTTCCATCGTTTGTATGCACTAGGTACGTTGTATGTAAGCTAATGACTTTAACGGGATTTAACGGCTTATAGTAGACTTGAATGAACATCCAAGTTCATCCAAGTCAACTTTAATTCATAAAAATCGTTAAGCTTGACTAGACTGAGATTCAATCAAAGCTAGAAACTCAAAAACTCATTCCGAATTGTGATTTTCAGAGGAGAAATCTGTGAACTCCGCGTGCCAGCTG</canonical>
            <polymorphic>GTATTTGGTAGTAGGAGACGTAGATAGTCCATAGTCCATTTGGTGTGATGAATCAGGTAATAATGGGTAGCCTGGTATCGTAAAAGCAACAAAAATTGTTTGAAACAACTTCCAAAGGCCAGGCAGCTGCAGCAAGCTATTTTTTCTCAAATTTTTCGAGCCGCCAAATTGATAGATGAGAGAAATTGTGGGGAGCGCGTGAGTGGGGGATTCACTATGTTGTTGTAACATTGAGTTTATAGATCACATCGAGGAGACGCAAGCCCACTTACCTGTACCTGAATGTCGAGGAGGAGGTTATCAGCCCATGTGGAACCATAAACAACACCTTCTGGATGGAGACTTATCATGAGCAGGAAGCAACTCTCGCCAACCGTATTGAGACTGCTTTAGCTATGAACGAGCTGGAATTGGATCCAAATGTGAAGACCGTCCGTGTCTACTCGTACAACTTCAGTTTGATCAACCGTAATCTCGAGGAAATCGGTCAGGAAGCAGTWAATGGAAATTACATGGCTATCTGGAGAGTGGCTTGTGAGGATTTCGACGAGGCTGTCAACTACATGGACGAATTTGTCGATCGGGAGGATGTCGACTACGACTCTCTCAAGCTCGCTAAGGGATTCTTCAAGAAAGGAGTCGCTCCAACCCCAACTCCAGAGCCTGTCGAGGAGGATGAGACCACCACCGAGTACCTTCGTACAACCACTGAGTTGATCCGTACCACCAGAAGAGTATTTAATGACAACAAGCCAATTCTTCTGAACCGACTTCCATCGTTTGTATGCACTAGGTACGTTGTATGTAAGCTAATGACTTTAACGGGATTTAACGGCTTATAGTAGACTTGAATGAACATCCAAGTTCATCCAAGTCAACTTTAATTCATAAAAATCGTTAAGCTTGACTAGACTGAGATTCAATCAAAGCTAGAAACTCAAAAACTCATTCCGAATTGTGATTTTCAGAGGAGAAATCTGTGAACTCCGCGTGCCAGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>499 240 102 80 52 17 10</canonical_bands>
                <polymorphic_bands>739 102 80 52 17 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCTGGATGGAGACTTATCAT</pcr_primer_p1>
		<pcr_primer_p2>AATTCGTCCATGTAGTTGACA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTTCTGGATGGAGACTTATCATGAGCAGGAAGCAACTCTCGCCAACCGTATTGAGACTGCTTTAGCTATGAACGAGCTGGAATTGGATCCAAATGTGAAGACCGTCCGTGTCTACTCGTACAACTTCAGTTTGATCAACCGTAATCTCGAGGAAATCGGTCAGGAAGCAGTTAATGGAAATTACATGGCTATCTGGAGAGTGGCTTGTGAGGATTTCGACGAGGCTGTCAACTACATGGACGAATT</canonical_amplicon>
		<polymorphic_amplicon>CTTCTGGATGGAGACTTATCATGAGCAGGAAGCAACTCTCGCCAACCGTATTGAGACTGCTTTAGCTATGAACGAGCTGGAATTGGATCCAAATGTGAAGACCGTCCGTGTCTACTCGTACAACTTCAGTTTGATCAACCGTAATCTCGAGGAAATCGGTCAGGAAGCAGTWAATGGAAATTACATGGCTATCTGGAGAGTGGCTTGTGAGGATTTCGACGAGGCTGTCAACTACATGGACGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12305</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>418803</contig_pos>
        <strand>+</strand>
        <context>AGACTGCTTT[A/G]GCTATGAACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTTATCATGAGCAGGAAGCAACTCTCGCCAACCGTATTGAGACTGCTTT</left_flank>
        <right_flank>GCTATGAACGAGCTGGAATTGGATCCAAATGTGAAGACCGTCCGTGTCTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGATCAGATTCTTACTGGTATCCCGACCGAGAACGATGTTGGCAAGCACACTGTTATGGTGAGTCAGAAGGCGGGAAGGGAAAACGTAGAAATAGAAGGAGGAGATAGTATTTGGTAGTAGGAGACGTAGATAGTCCATAGTCCATTTGGTGTGATGAATCAGGTAATAATGGGTAGCCTGGTATCGTAAAAGCAACAAAAATTGTTTGAAACAACTTCCAAAGGCCAGGCAGCTGCAGCAAGCTATTTTTTCTCAAATTTTTCGAGCCGCCAAATTGATAGATGAGAGAAATTGTGGGGAGCGCGTGAGTGGGGGATTCACTATGTTGTTGTAACATTGAGTTTATAGATCACATCGAGGAGACGCAAGCCCACTTACCTGTACCTGAATGTCGAGGAGGAGGTTATCAGCCCATGTGGAACCATAAACAACACCTTCTGGATGGAGACTTATCATGAGCAGGAAGCAACTCTCGCCAACCGTATTGAGACTGCTTTAGCTATGAACGAGCTGGAATTGGATCCAAATGTGAAGACCGTCCGTGTCTACTCGTACAACTTCAGTTTGATCAACCGTAATCTCGAGGAAATCGGTCAGGAAGCAGTTAATGGAAATTACATGGCTATCTGGAGAGTGGCTTGTGAGGATTTCGACGAGGCTGTCAACTACATGGACGAATTTGTCGATCGGGAGGATGTCGACTACGACTCTCTCAAGCTCGCTAAGGGATTCTTCAAGAAAGGAGTCGCTCCAACCCCAACTCCAGAGCCTGTCGAGGAGGATGAGACCACCACCGAGTACCTTCGTACAACCACTGAGTTGATCCGTACCACCAGAAGAGTATTTAATGACAACAAGCCAATTCTTCTGAACCGACTTCCATCGTTTGTATGCACTAGGTACGTTGTATGTAAGCTAATGACTTTAACGGGATTTAACGGCTTATAGTAGACTTGAATGAACATCCAAGTTCATCCAAGTCAACTTTAATTCATAAA</canonical>
            <polymorphic>GCGATCAGATTCTTACTGGTATCCCGACCGAGAACGATGTTGGCAAGCACACTGTTATGGTGAGTCAGAAGGCGGGAAGGGAAAACGTAGAAATAGAAGGAGGAGATAGTATTTGGTAGTAGGAGACGTAGATAGTCCATAGTCCATTTGGTGTGATGAATCAGGTAATAATGGGTAGCCTGGTATCGTAAAAGCAACAAAAATTGTTTGAAACAACTTCCAAAGGCCAGGCAGCTGCAGCAAGCTATTTTTTCTCAAATTTTTCGAGCCGCCAAATTGATAGATGAGAGAAATTGTGGGGAGCGCGTGAGTGGGGGATTCACTATGTTGTTGTAACATTGAGTTTATAGATCACATCGAGGAGACGCAAGCCCACTTACCTGTACCTGAATGTCGAGGAGGAGGTTATCAGCCCATGTGGAACCATAAACAACACCTTCTGGATGGAGACTTATCATGAGCAGGAAGCAACTCTCGCCAACCGTATTGAGACTGCTTTRGCTATGAACGAGCTGGAATTGGATCCAAATGTGAAGACCGTCCGTGTCTACTCGTACAACTTCAGTTTGATCAACCGTAATCTCGAGGAAATCGGTCAGGAAGCAGTTAATGGAAATTACATGGCTATCTGGAGAGTGGCTTGTGAGGATTTCGACGAGGCTGTCAACTACATGGACGAATTTGTCGATCGGGAGGATGTCGACTACGACTCTCTCAAGCTCGCTAAGGGATTCTTCAAGAAAGGAGTCGCTCCAACCCCAACTCCAGAGCCTGTCGAGGAGGATGAGACCACCACCGAGTACCTTCGTACAACCACTGAGTTGATCCGTACCACCAGAAGAGTATTTAATGACAACAAGCCAATTCTTCTGAACCGACTTCCATCGTTTGTATGCACTAGGTACGTTGTATGTAAGCTAATGACTTTAACGGGATTTAACGGCTTATAGTAGACTTGAATGAACATCCAAGTTCATCCAAGTCAACTTTAATTCATAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>257 234 207 198 83 11 10</canonical_bands>
                <polymorphic_bands>268 234 207 198 83 10</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>178 112 103 90 89 59 57 57 51 48 41 26 24 21 15 11 10 8</canonical_bands>
                <polymorphic_bands>178 112 103 100 90 59 57 57 51 48 41 26 24 21 15 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCACTATGTTGTTGTAACATTGA</pcr_primer_p1>
		<pcr_primer_p2>AAACTGAAGTTGTACGAGTAGACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCACTATGTTGTTGTAACATTGAGTTTATAGATCACATCGAGGAGACGCAAGCCCACTTACCTGTACCTGAATGTCGAGGAGGAGGTTATCAGCCCATGTGGAACCATAAACAACACCTTCTGGATGGAGACTTATCATGAGCAGGAAGCAACTCTCGCCAACCGTATTGAGACTGCTTTAGCTATGAACGAGCTGGAATTGGATCCAAATGTGAAGACCGTCCGTGTCTACTCGTACAACTTCAGTTT</canonical_amplicon>
		<polymorphic_amplicon>TTCACTATGTTGTTGTAACATTGAGTTTATAGATCACATCGAGGAGACGCAAGCCCACTTACCTGTACCTGAATGTCGAGGAGGAGGTTATCAGCCCATGTGGAACCATAAACAACACCTTCTGGATGGAGACTTATCATGAGCAGGAAGCAACTCTCGCCAACCGTATTGAGACTGCTTTRGCTATGAACGAGCTGGAATTGGATCCAAATGTGAAGACCGTCCGTGTCTACTCGTACAACTTCAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12306</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>437124</contig_pos>
        <strand></strand>
        <context>tatctcacat[G/A]ggaactcaga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CATCATATTACCAATATTTTAGCAGTTGACAGATTTCTGATATCTCACAT</left_flank>
        <right_flank>GGAACTCAGATAATTGCAAAGGTGGGATTCCACTAGAGCAAAACTGTCAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGTGTACTTCGAAGCGCGTGTGTCCATGAGTCGTCGGGCTTCCTGAAGATGTTCATCATCCGTCGTCTCGGAGTAAGGACAGTCATGGTTCAAGTGTTTGGGAGGAGTCGATGATGTTTCAGGCGTTCCCATGAGTGTCTGTGATGGACCGAATGCTATAATGTTGTCCGTTCGATTTGAAACCTGGCTGAGGAAGTCCCCAAACAGCGTATCATGAGCTTCTCCAAGATAGAAGCTCGAAGGCTTTGGGCCATCCTGGTCATCAATGTTTGATGGGACTGAAATATTATATTGAAGGATAAAATGAGTTCTGATTAGTGGATACTGTATTTGCTTTAACAGAAGCGCGCCGTATGCGTGCACTTTAAGCTCAAATATATCAGCTCCTTTGTAAGATATCAGAGAGTTTTAACTGATAAATTATTCATCGTGCTTTTTCAAATTATTCATCATATTACCAATATTTTAGCAGTTGACAGATTTCTGATATCTCACATGGGAACTCAGATAATTGCAAAGGTGGGATTCCACTAGAGCAAAACTGTCATTCAAAAGATATCTTTGAATAATCTATTTCTATTTTTTTGAGAAGATTTTAGCAACATGGCATGTCAAGTTTGCTGTATGTATTTTATAGAATTTCAAACTATTAGCATTTTACCAGTGGATACCGGACTCGGCCAGCTGGTTTCCTGAATATAGAGCAACGGACCAGCTGGAGCCATCACAAAAAAATCGGCTGCTGTCCAATCTTGGCGATCTAAAAAATTGTTGGAAACCAGAGCAAAAACTTCAAAATTGATTTGTATGTCAATGAAAAGTTTGATAACCTACCAGTGGGGCACGGACCCAGAAGGCCAGATTGATATTTGCTTCCCCAGTTGTCCATCAGTCGCTGCTTGTTCGATTGAGTTTGTTGAAAGCTAGAAATTCGAAAATTCAGAGTCGAGCAGTAATTACAGGCTTCGGTTCATAAAATGAGAAAGGGAAACATGAGA</canonical>
            <polymorphic>TTTGTGTACTTCGAAGCGCGTGTGTCCATGAGTCGTCGGGCTTCCTGAAGATGTTCATCATCCGTCGTCTCGGAGTAAGGACAGTCATGGTTCAAGTGTTTGGGAGGAGTCGATGATGTTTCAGGCGTTCCCATGAGTGTCTGTGATGGACCGAATGCTATAATGTTGTCCGTTCGATTTGAAACCTGGCTGAGGAAGTCCCCAAACAGCGTATCATGAGCTTCTCCAAGATAGAAGCTCGAAGGCTTTGGGCCATCCTGGTCATCAATGTTTGATGGGACTGAAATATTATATTGAAGGATAAAATGAGTTCTGATTAGTGGATACTGTATTTGCTTTAACAGAAGCGCGCCGTATGCGTGCACTTTAAGCTCAAATATATCAGCTCCTTTGTAAGATATCAGAGAGTTTTAACTGATAAATTATTCATCGTGCTTTTTCAAATTATTCATCATATTACCAATATTTTAGCAGTTGACAGATTTCTGATATCTCACATRGGAACTCAGATAATTGCAAAGGTGGGATTCCACTAGAGCAAAACTGTCATTCAAAAGATATCTTTGAATAATCTATTTCTATTTTTTTGAGAAGATTTTAGCAACATGGCATGTCAAGTTTGCTGTATGTATTTTATAGAATTTCAAACTATTAGCATTTTACCAGTGGATACCGGACTCGGCCAGCTGGTTTCCTGAATATAGAGCAACGGACCAGCTGGAGCCATCACAAAAAAATCGGCTGCTGTCCAATCTTGGCGATCTAAAAAATTGTTGGAAACCAGAGCAAAAACTTCAAAATTGATTTGTATGTCAATGAAAAGTTTGATAACCTACCAGTGGGGCACGGACCCAGAAGGCCAGATTGATATTTGCTTCCCCAGTTGTCCATCAGTCGCTGCTTGTTCGATTGAGTTTGTTGAAAGCTAGAAATTCGAAAATTCAGAGTCGAGCAGTAATTACAGGCTTCGGTTCATAAAATGAGAAAGGGAAACATGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>384 282 108 83 59 46 27 6 5</canonical_bands>
                <polymorphic_bands>390 384 83 59 46 27 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGAGTTCTGATTAGTGGATACT</pcr_primer_p1>
		<pcr_primer_p2>TTGAATGACAGTTTTGCTCTAGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAATGAGTTCTGATTAGTGGATACTGTATTTGCTTTAACAGAAGCGCGCCGTATGCGTGCACTTTAAGCTCAAATATATCAGCTCCTTTGTAAGATATCAGAGAGTTTTAACTGATAAATTATTCATCGTGCTTTTTCAAATTATTCATCATATTACCAATATTTTAGCAGTTGACAGATTTCTGATATCTCACATGGGAACTCAGATAATTGCAAAGGTGGGATTCCACTAGAGCAAAACTGTCATTCAA</canonical_amplicon>
		<polymorphic_amplicon>AAATGAGTTCTGATTAGTGGATACTGTATTTGCTTTAACAGAAGCGCGCCGTATGCGTGCACTTTAAGCTCAAATATATCAGCTCCTTTGTAAGATATCAGAGAGTTTTAACTGATAAATTATTCATCGTGCTTTTTCAAATTATTCATCATATTACCAATATTTTAGCAGTTGACAGATTTCTGATATCTCACATRGGAACTCAGATAATTGCAAAGGTGGGATTCCACTAGAGCAAAACTGTCATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12307</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>437263</contig_pos>
        <strand></strand>
        <context>GTATTTTATA[G/T]AATTTCAAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAGAAGATTTTAGCAACATGGCATGTCAAGTTTGCTGTATGTATTTTATA</left_flank>
        <right_flank>AATTTCAAACTATTAGCATTTTACCAGTGGATACCGGACTCGGCCAGCTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGTGATGGACCGAATGCTATAATGTTGTCCGTTCGATTTGAAACCTGGCTGAGGAAGTCCCCAAACAGCGTATCATGAGCTTCTCCAAGATAGAAGCTCGAAGGCTTTGGGCCATCCTGGTCATCAATGTTTGATGGGACTGAAATATTATATTGAAGGATAAAATGAGTTCTGATTAGTGGATACTGTATTTGCTTTAACAGAAGCGCGCCGTATGCGTGCACTTTAAGCTCAAATATATCAGCTCCTTTGTAAGATATCAGAGAGTTTTAACTGATAAATTATTCATCGTGCTTTTTCAAATTATTCATCATATTACCAATATTTTAGCAGTTGACAGATTTCTGATATCTCACATGGGAACTCAGATAATTGCAAAGGTGGGATTCCACTAGAGCAAAACTGTCATTCAAAAGATATCTTTGAATAATCTATTTCTATTTTTTTGAGAAGATTTTAGCAACATGGCATGTCAAGTTTGCTGTATGTATTTTATAGAATTTCAAACTATTAGCATTTTACCAGTGGATACCGGACTCGGCCAGCTGGTTTCCTGAATATAGAGCAACGGACCAGCTGGAGCCATCACAAAAAAATCGGCTGCTGTCCAATCTTGGCGATCTAAAAAATTGTTGGAAACCAGAGCAAAAACTTCAAAATTGATTTGTATGTCAATGAAAAGTTTGATAACCTACCAGTGGGGCACGGACCCAGAAGGCCAGATTGATATTTGCTTCCCCAGTTGTCCATCAGTCGCTGCTTGTTCGATTGAGTTTGTTGAAAGCTAGAAATTCGAAAATTCAGAGTCGAGCAGTAATTACAGGCTTCGGTTCATAAAATGAGAAAGGGAAACATGAGAAAAAGAGACGAGTTACTAGAATCGTCTTTCGTTCAGAAAAACATCAATAGAGGAAAAAATGGGTAAAATGACACTGGCCAGGAAATAAGTTAGGTAAAGATGAATAAAACAAACAACTGAGGGCAGTGTTCAACAGACA</canonical>
            <polymorphic>TCTGTGATGGACCGAATGCTATAATGTTGTCCGTTCGATTTGAAACCTGGCTGAGGAAGTCCCCAAACAGCGTATCATGAGCTTCTCCAAGATAGAAGCTCGAAGGCTTTGGGCCATCCTGGTCATCAATGTTTGATGGGACTGAAATATTATATTGAAGGATAAAATGAGTTCTGATTAGTGGATACTGTATTTGCTTTAACAGAAGCGCGCCGTATGCGTGCACTTTAAGCTCAAATATATCAGCTCCTTTGTAAGATATCAGAGAGTTTTAACTGATAAATTATTCATCGTGCTTTTTCAAATTATTCATCATATTACCAATATTTTAGCAGTTGACAGATTTCTGATATCTCACATGGGAACTCAGATAATTGCAAAGGTGGGATTCCACTAGAGCAAAACTGTCATTCAAAAGATATCTTTGAATAATCTATTTCTATTTTTTTGAGAAGATTTTAGCAACATGGCATGTCAAGTTTGCTGTATGTATTTTATAKAATTTCAAACTATTAGCATTTTACCAGTGGATACCGGACTCGGCCAGCTGGTTTCCTGAATATAGAGCAACGGACCAGCTGGAGCCATCACAAAAAAATCGGCTGCTGTCCAATCTTGGCGATCTAAAAAATTGTTGGAAACCAGAGCAAAAACTTCAAAATTGATTTGTATGTCAATGAAAAGTTTGATAACCTACCAGTGGGGCACGGACCCAGAAGGCCAGATTGATATTTGCTTCCCCAGTTGTCCATCAGTCGCTGCTTGTTCGATTGAGTTTGTTGAAAGCTAGAAATTCGAAAATTCAGAGTCGAGCAGTAATTACAGGCTTCGGTTCATAAAATGAGAAAGGGAAACATGAGAAAAAGAGACGAGTTACTAGAATCGTCTTTCGTTCAGAAAAACATCAATAGAGGAAAAAATGGGTAAAATGACACTGGCCAGGAAATAAGTTAGGTAAAGATGAATAAAACAAACAACTGAGGGCAGTGTTCAACAGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>500 291 201 8</canonical_bands>
                <polymorphic_bands>791 201 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAAAACTGTCATTCAAAAGAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAGTTTTTGCTCTGGT</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>GCAAAACTGTCATTCAAAAGATATCTTTGAATAATCTATTTCTATTTTTTTGAGAAGATTTTAGCAACATGGCATGTCAAGTTTGCTGTATGTATTTTATAGAATTTCAAACTATTAGCATTTTACCAGTGGATACCGGACTCGGCCAGCTGGTTTCCTGAATATAGAGCAACGGACCAGCTGGAGCCATCACAAAAAAATCGGCTGCTGTCCAATCTTGGCGATCTAAAAAATTGTTGGAAACCAGAGCAAAAACTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>GCAAAACTGTCATTCAAAAGATATCTTTGAATAATCTATTTCTATTTTTTTGAGAAGATTTTAGCAACATGGCATGTCAAGTTTGCTGTATGTATTTTATAKAATTTCAAACTATTAGCATTTTACCAGTGGATACCGGACTCGGCCAGCTGGTTTCCTGAATATAGAGCAACGGACCAGCTGGAGCCATCACAAAAAAATCGGCTGCTGTCCAATCTTGGCGATCTAAAAAATTGTTGGAAACCAGAGCAAAAACTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12308</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>437274</contig_pos>
        <strand></strand>
        <context>AATTTCAAAC[T/A]WTTAGCATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGCAACATGGCATGTCAAGTTTGCTGTATGTATTTTATAGAATTTCAAAC</left_flank>
        <right_flank>ATTAGCATTTTACCAGTGGATACCGGACTCGGCCAGCTGGTTTCCTGAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGAATGCTATAATGTTGTCCGTTCGATTTGAAACCTGGCTGAGGAAGTCCCCAAACAGCGTATCATGAGCTTCTCCAAGATAGAAGCTCGAAGGCTTTGGGCCATCCTGGTCATCAATGTTTGATGGGACTGAAATATTATATTGAAGGATAAAATGAGTTCTGATTAGTGGATACTGTATTTGCTTTAACAGAAGCGCGCCGTATGCGTGCACTTTAAGCTCAAATATATCAGCTCCTTTGTAAGATATCAGAGAGTTTTAACTGATAAATTATTCATCGTGCTTTTTCAAATTATTCATCATATTACCAATATTTTAGCAGTTGACAGATTTCTGATATCTCACATGGGAACTCAGATAATTGCAAAGGTGGGATTCCACTAGAGCAAAACTGTCATTCAAAAGATATCTTTGAATAATCTATTTCTATTTTTTTGAGAAGATTTTAGCAACATGGCATGTCAAGTTTGCTGTATGTATTTTATAGAATTTCAAACTATTAGCATTTTACCAGTGGATACCGGACTCGGCCAGCTGGTTTCCTGAATATAGAGCAACGGACCAGCTGGAGCCATCACAAAAAAATCGGCTGCTGTCCAATCTTGGCGATCTAAAAAATTGTTGGAAACCAGAGCAAAAACTTCAAAATTGATTTGTATGTCAATGAAAAGTTTGATAACCTACCAGTGGGGCACGGACCCAGAAGGCCAGATTGATATTTGCTTCCCCAGTTGTCCATCAGTCGCTGCTTGTTCGATTGAGTTTGTTGAAAGCTAGAAATTCGAAAATTCAGAGTCGAGCAGTAATTACAGGCTTCGGTTCATAAAATGAGAAAGGGAAACATGAGAAAAAGAGACGAGTTACTAGAATCGTCTTTCGTTCAGAAAAACATCAATAGAGGAAAAAATGGGTAAAATGACACTGGCCAGGAAATAAGTTAGGTAAAGATGAATAAAACAAACAACTGAGGGCAGTGTTCAACAGACACCTACATTGAA</canonical>
            <polymorphic>CCGAATGCTATAATGTTGTCCGTTCGATTTGAAACCTGGCTGAGGAAGTCCCCAAACAGCGTATCATGAGCTTCTCCAAGATAGAAGCTCGAAGGCTTTGGGCCATCCTGGTCATCAATGTTTGATGGGACTGAAATATTATATTGAAGGATAAAATGAGTTCTGATTAGTGGATACTGTATTTGCTTTAACAGAAGCGCGCCGTATGCGTGCACTTTAAGCTCAAATATATCAGCTCCTTTGTAAGATATCAGAGAGTTTTAACTGATAAATTATTCATCGTGCTTTTTCAAATTATTCATCATATTACCAATATTTTAGCAGTTGACAGATTTCTGATATCTCACATGGGAACTCAGATAATTGCAAAGGTGGGATTCCACTAGAGCAAAACTGTCATTCAAAAGATATCTTTGAATAATCTATTTCTATTTTTTTGAGAAGATTTTAGCAACATGGCATGTCAAGTTTGCTGTATGTATTTTATAGAATTTCAAACWATTAGCATTTTACCAGTGGATACCGGACTCGGCCAGCTGGTTTCCTGAATATAGAGCAACGGACCAGCTGGAGCCATCACAAAAAAATCGGCTGCTGTCCAATCTTGGCGATCTAAAAAATTGTTGGAAACCAGAGCAAAAACTTCAAAATTGATTTGTATGTCAATGAAAAGTTTGATAACCTACCAGTGGGGCACGGACCCAGAAGGCCAGATTGATATTTGCTTCCCCAGTTGTCCATCAGTCGCTGCTTGTTCGATTGAGTTTGTTGAAAGCTAGAAATTCGAAAATTCAGAGTCGAGCAGTAATTACAGGCTTCGGTTCATAAAATGAGAAAGGGAAACATGAGAAAAAGAGACGAGTTACTAGAATCGTCTTTCGTTCAGAAAAACATCAATAGAGGAAAAAATGGGTAAAATGACACTGGCCAGGAAATAAGTTAGGTAAAGATGAATAAAACAAACAACTGAGGGCAGTGTTCAACAGACACCTACATTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAAAACTGTCATTCAAAAGAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAGTTTTTGCTCTGGT</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>GCAAAACTGTCATTCAAAAGATATCTTTGAATAATCTATTTCTATTTTTTTGAGAAGATTTTAGCAACATGGCATGTCAAGTTTGCTGTATGTATTTTATAGAATTTCAAACTATTAGCATTTTACCAGTGGATACCGGACTCGGCCAGCTGGTTTCCTGAATATAGAGCAACGGACCAGCTGGAGCCATCACAAAAAAATCGGCTGCTGTCCAATCTTGGCGATCTAAAAAATTGTTGGAAACCAGAGCAAAAACTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>GCAAAACTGTCATTCAAAAGATATCTTTGAATAATCTATTTCTATTTTTTTGAGAAGATTTTAGCAACATGGCATGTCAAGTTTGCTGTATGTATTTTATAGAATTTCAAACWATTAGCATTTTACCAGTGGATACCGGACTCGGCCAGCTGGTTTCCTGAATATAGAGCAACGGACCAGCTGGAGCCATCACAAAAAAATCGGCTGCTGTCCAATCTTGGCGATCTAAAAAATTGTTGGAAACCAGAGCAAAAACTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12309</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>437275</contig_pos>
        <strand></strand>
        <context>ATTTCAAACW[A/T]TTAGCATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCAACATGGCATGTCAAGTTTGCTGTATGTATTTTATAGAATTTCAAACT</left_flank>
        <right_flank>TTAGCATTTTACCAGTGGATACCGGACTCGGCCAGCTGGTTTCCTGAATA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAATGCTATAATGTTGTCCGTTCGATTTGAAACCTGGCTGAGGAAGTCCCCAAACAGCGTATCATGAGCTTCTCCAAGATAGAAGCTCGAAGGCTTTGGGCCATCCTGGTCATCAATGTTTGATGGGACTGAAATATTATATTGAAGGATAAAATGAGTTCTGATTAGTGGATACTGTATTTGCTTTAACAGAAGCGCGCCGTATGCGTGCACTTTAAGCTCAAATATATCAGCTCCTTTGTAAGATATCAGAGAGTTTTAACTGATAAATTATTCATCGTGCTTTTTCAAATTATTCATCATATTACCAATATTTTAGCAGTTGACAGATTTCTGATATCTCACATGGGAACTCAGATAATTGCAAAGGTGGGATTCCACTAGAGCAAAACTGTCATTCAAAAGATATCTTTGAATAATCTATTTCTATTTTTTTGAGAAGATTTTAGCAACATGGCATGTCAAGTTTGCTGTATGTATTTTATAGAATTTCAAACTATTAGCATTTTACCAGTGGATACCGGACTCGGCCAGCTGGTTTCCTGAATATAGAGCAACGGACCAGCTGGAGCCATCACAAAAAAATCGGCTGCTGTCCAATCTTGGCGATCTAAAAAATTGTTGGAAACCAGAGCAAAAACTTCAAAATTGATTTGTATGTCAATGAAAAGTTTGATAACCTACCAGTGGGGCACGGACCCAGAAGGCCAGATTGATATTTGCTTCCCCAGTTGTCCATCAGTCGCTGCTTGTTCGATTGAGTTTGTTGAAAGCTAGAAATTCGAAAATTCAGAGTCGAGCAGTAATTACAGGCTTCGGTTCATAAAATGAGAAAGGGAAACATGAGAAAAAGAGACGAGTTACTAGAATCGTCTTTCGTTCAGAAAAACATCAATAGAGGAAAAAATGGGTAAAATGACACTGGCCAGGAAATAAGTTAGGTAAAGATGAATAAAACAAACAACTGAGGGCAGTGTTCAACAGACACCTACATTGAAC</canonical>
            <polymorphic>CGAATGCTATAATGTTGTCCGTTCGATTTGAAACCTGGCTGAGGAAGTCCCCAAACAGCGTATCATGAGCTTCTCCAAGATAGAAGCTCGAAGGCTTTGGGCCATCCTGGTCATCAATGTTTGATGGGACTGAAATATTATATTGAAGGATAAAATGAGTTCTGATTAGTGGATACTGTATTTGCTTTAACAGAAGCGCGCCGTATGCGTGCACTTTAAGCTCAAATATATCAGCTCCTTTGTAAGATATCAGAGAGTTTTAACTGATAAATTATTCATCGTGCTTTTTCAAATTATTCATCATATTACCAATATTTTAGCAGTTGACAGATTTCTGATATCTCACATGGGAACTCAGATAATTGCAAAGGTGGGATTCCACTAGAGCAAAACTGTCATTCAAAAGATATCTTTGAATAATCTATTTCTATTTTTTTGAGAAGATTTTAGCAACATGGCATGTCAAGTTTGCTGTATGTATTTTATAGAATTTCAAACTWTTAGCATTTTACCAGTGGATACCGGACTCGGCCAGCTGGTTTCCTGAATATAGAGCAACGGACCAGCTGGAGCCATCACAAAAAAATCGGCTGCTGTCCAATCTTGGCGATCTAAAAAATTGTTGGAAACCAGAGCAAAAACTTCAAAATTGATTTGTATGTCAATGAAAAGTTTGATAACCTACCAGTGGGGCACGGACCCAGAAGGCCAGATTGATATTTGCTTCCCCAGTTGTCCATCAGTCGCTGCTTGTTCGATTGAGTTTGTTGAAAGCTAGAAATTCGAAAATTCAGAGTCGAGCAGTAATTACAGGCTTCGGTTCATAAAATGAGAAAGGGAAACATGAGAAAAAGAGACGAGTTACTAGAATCGTCTTTCGTTCAGAAAAACATCAATAGAGGAAAAAATGGGTAAAATGACACTGGCCAGGAAATAAGTTAGGTAAAGATGAATAAAACAAACAACTGAGGGCAGTGTTCAACAGACACCTACATTGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAAAACTGTCATTCAAAAGAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAGTTTTTGCTCTGGT</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>GCAAAACTGTCATTCAAAAGATATCTTTGAATAATCTATTTCTATTTTTTTGAGAAGATTTTAGCAACATGGCATGTCAAGTTTGCTGTATGTATTTTATAGAATTTCAAACTATTAGCATTTTACCAGTGGATACCGGACTCGGCCAGCTGGTTTCCTGAATATAGAGCAACGGACCAGCTGGAGCCATCACAAAAAAATCGGCTGCTGTCCAATCTTGGCGATCTAAAAAATTGTTGGAAACCAGAGCAAAAACTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>GCAAAACTGTCATTCAAAAGATATCTTTGAATAATCTATTTCTATTTTTTTGAGAAGATTTTAGCAACATGGCATGTCAAGTTTGCTGTATGTATTTTATAGAATTTCAAACTWTTAGCATTTTACCAGTGGATACCGGACTCGGCCAGCTGGTTTCCTGAATATAGAGCAACGGACCAGCTGGAGCCATCACAAAAAAATCGGCTGCTGTCCAATCTTGGCGATCTAAAAAATTGTTGGAAACCAGAGCAAAAACTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12310</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>437327</contig_pos>
        <strand></strand>
        <context>TCCTGAATAT[A/C]GAGCAACGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAGCATTTTACCAGTGGATACCGGACTCGGCCAGCTGGTTTCCTGAATAT</left_flank>
        <right_flank>GAGCAACGGACCAGCTGGAGCCATCACAAAAAAATCGGCTGCTGTCCAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACAGCGTATCATGAGCTTCTCCAAGATAGAAGCTCGAAGGCTTTGGGCCATCCTGGTCATCAATGTTTGATGGGACTGAAATATTATATTGAAGGATAAAATGAGTTCTGATTAGTGGATACTGTATTTGCTTTAACAGAAGCGCGCCGTATGCGTGCACTTTAAGCTCAAATATATCAGCTCCTTTGTAAGATATCAGAGAGTTTTAACTGATAAATTATTCATCGTGCTTTTTCAAATTATTCATCATATTACCAATATTTTAGCAGTTGACAGATTTCTGATATCTCACATGGGAACTCAGATAATTGCAAAGGTGGGATTCCACTAGAGCAAAACTGTCATTCAAAAGATATCTTTGAATAATCTATTTCTATTTTTTTGAGAAGATTTTAGCAACATGGCATGTCAAGTTTGCTGTATGTATTTTATAGAATTTCAAACTATTAGCATTTTACCAGTGGATACCGGACTCGGCCAGCTGGTTTCCTGAATATAGAGCAACGGACCAGCTGGAGCCATCACAAAAAAATCGGCTGCTGTCCAATCTTGGCGATCTAAAAAATTGTTGGAAACCAGAGCAAAAACTTCAAAATTGATTTGTATGTCAATGAAAAGTTTGATAACCTACCAGTGGGGCACGGACCCAGAAGGCCAGATTGATATTTGCTTCCCCAGTTGTCCATCAGTCGCTGCTTGTTCGATTGAGTTTGTTGAAAGCTAGAAATTCGAAAATTCAGAGTCGAGCAGTAATTACAGGCTTCGGTTCATAAAATGAGAAAGGGAAACATGAGAAAAAGAGACGAGTTACTAGAATCGTCTTTCGTTCAGAAAAACATCAATAGAGGAAAAAATGGGTAAAATGACACTGGCCAGGAAATAAGTTAGGTAAAGATGAATAAAACAAACAACTGAGGGCAGTGTTCAACAGACACCTACATTGAACACAAGCGAAACATCTGCGGATGAAATACTTCCTATTTTGTGCAATCGTAGAA</canonical>
            <polymorphic>AAACAGCGTATCATGAGCTTCTCCAAGATAGAAGCTCGAAGGCTTTGGGCCATCCTGGTCATCAATGTTTGATGGGACTGAAATATTATATTGAAGGATAAAATGAGTTCTGATTAGTGGATACTGTATTTGCTTTAACAGAAGCGCGCCGTATGCGTGCACTTTAAGCTCAAATATATCAGCTCCTTTGTAAGATATCAGAGAGTTTTAACTGATAAATTATTCATCGTGCTTTTTCAAATTATTCATCATATTACCAATATTTTAGCAGTTGACAGATTTCTGATATCTCACATGGGAACTCAGATAATTGCAAAGGTGGGATTCCACTAGAGCAAAACTGTCATTCAAAAGATATCTTTGAATAATCTATTTCTATTTTTTTGAGAAGATTTTAGCAACATGGCATGTCAAGTTTGCTGTATGTATTTTATAGAATTTCAAACTATTAGCATTTTACCAGTGGATACCGGACTCGGCCAGCTGGTTTCCTGAATATMGAGCAACGGACCAGCTGGAGCCATCACAAAAAAATCGGCTGCTGTCCAATCTTGGCGATCTAAAAAATTGTTGGAAACCAGAGCAAAAACTTCAAAATTGATTTGTATGTCAATGAAAAGTTTGATAACCTACCAGTGGGGCACGGACCCAGAAGGCCAGATTGATATTTGCTTCCCCAGTTGTCCATCAGTCGCTGCTTGTTCGATTGAGTTTGTTGAAAGCTAGAAATTCGAAAATTCAGAGTCGAGCAGTAATTACAGGCTTCGGTTCATAAAATGAGAAAGGGAAACATGAGAAAAAGAGACGAGTTACTAGAATCGTCTTTCGTTCAGAAAAACATCAATAGAGGAAAAAATGGGTAAAATGACACTGGCCAGGAAATAAGTTAGGTAAAGATGAATAAAACAAACAACTGAGGGCAGTGTTCAACAGACACCTACATTGAACACAAGCGAAACATCTGCGGATGAAATACTTCCTATTTTGTGCAATCGTAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCAAGTTTGCTGTATGTATTT</pcr_primer_p1>
		<pcr_primer_p2>CCACTGGTAGGTTATCAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>TGTCAAGTTTGCTGTATGTATTTTATAGAATTTCAAACTATTAGCATTTTACCAGTGGATACCGGACTCGGCCAGCTGGTTTCCTGAATATAGAGCAACGGACCAGCTGGAGCCATCACAAAAAAATCGGCTGCTGTCCAATCTTGGCGATCTAAAAAATTGTTGGAAACCAGAGCAAAAACTTCAAAATTGATTTGTATGTCAATGAAAAGTTTGATAACCTACCAGTGG</canonical_amplicon>
		<polymorphic_amplicon>TGTCAAGTTTGCTGTATGTATTTTATAGAATTTCAAACTATTAGCATTTTACCAGTGGATACCGGACTCGGCCAGCTGGTTTCCTGAATATMGAGCAACGGACCAGCTGGAGCCATCACAAAAAAATCGGCTGCTGTCCAATCTTGGCGATCTAAAAAATTGTTGGAAACCAGAGCAAAAACTTCAAAATTGATTTGTATGTCAATGAAAAGTTTGATAACCTACCAGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12311</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>437432</contig_pos>
        <strand></strand>
        <context>AAATTGATTT[G/A]TATGTCAATG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GCGATCTAAAAAATTGTTGGAAACCAGAGCAAAAACTTCAAAATTGATTT</left_flank>
        <right_flank>TATGTCAATGAAAAGTTTGATAACCTACCAGTGGGGCACGGACCCAGAAG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTCTGATTAGTGGATACTGTATTTGCTTTAACAGAAGCGCGCCGTATGCGTGCACTTTAAGCTCAAATATATCAGCTCCTTTGTAAGATATCAGAGAGTTTTAACTGATAAATTATTCATCGTGCTTTTTCAAATTATTCATCATATTACCAATATTTTAGCAGTTGACAGATTTCTGATATCTCACATGGGAACTCAGATAATTGCAAAGGTGGGATTCCACTAGAGCAAAACTGTCATTCAAAAGATATCTTTGAATAATCTATTTCTATTTTTTTGAGAAGATTTTAGCAACATGGCATGTCAAGTTTGCTGTATGTATTTTATAGAATTTCAAACTATTAGCATTTTACCAGTGGATACCGGACTCGGCCAGCTGGTTTCCTGAATATAGAGCAACGGACCAGCTGGAGCCATCACAAAAAAATCGGCTGCTGTCCAATCTTGGCGATCTAAAAAATTGTTGGAAACCAGAGCAAAAACTTCAAAATTGATTTGTATGTCAATGAAAAGTTTGATAACCTACCAGTGGGGCACGGACCCAGAAGGCCAGATTGATATTTGCTTCCCCAGTTGTCCATCAGTCGCTGCTTGTTCGATTGAGTTTGTTGAAAGCTAGAAATTCGAAAATTCAGAGTCGAGCAGTAATTACAGGCTTCGGTTCATAAAATGAGAAAGGGAAACATGAGAAAAAGAGACGAGTTACTAGAATCGTCTTTCGTTCAGAAAAACATCAATAGAGGAAAAAATGGGTAAAATGACACTGGCCAGGAAATAAGTTAGGTAAAGATGAATAAAACAAACAACTGAGGGCAGTGTTCAACAGACACCTACATTGAACACAAGCGAAACATCTGCGGATGAAATACTTCCTATTTTGTGCAATCGTAGAAATGGATACATACAGAAAACAACAAAATTGTCTTATTCTGAGCTAGCTAGATTCGGATAGGCTGCACATATCATTCAGGTAGTCAGTTTTCAGTTTTCAATCTAAA</canonical>
            <polymorphic>AGTTCTGATTAGTGGATACTGTATTTGCTTTAACAGAAGCGCGCCGTATGCGTGCACTTTAAGCTCAAATATATCAGCTCCTTTGTAAGATATCAGAGAGTTTTAACTGATAAATTATTCATCGTGCTTTTTCAAATTATTCATCATATTACCAATATTTTAGCAGTTGACAGATTTCTGATATCTCACATGGGAACTCAGATAATTGCAAAGGTGGGATTCCACTAGAGCAAAACTGTCATTCAAAAGATATCTTTGAATAATCTATTTCTATTTTTTTGAGAAGATTTTAGCAACATGGCATGTCAAGTTTGCTGTATGTATTTTATAGAATTTCAAACTATTAGCATTTTACCAGTGGATACCGGACTCGGCCAGCTGGTTTCCTGAATATAGAGCAACGGACCAGCTGGAGCCATCACAAAAAAATCGGCTGCTGTCCAATCTTGGCGATCTAAAAAATTGTTGGAAACCAGAGCAAAAACTTCAAAATTGATTTRTATGTCAATGAAAAGTTTGATAACCTACCAGTGGGGCACGGACCCAGAAGGCCAGATTGATATTTGCTTCCCCAGTTGTCCATCAGTCGCTGCTTGTTCGATTGAGTTTGTTGAAAGCTAGAAATTCGAAAATTCAGAGTCGAGCAGTAATTACAGGCTTCGGTTCATAAAATGAGAAAGGGAAACATGAGAAAAAGAGACGAGTTACTAGAATCGTCTTTCGTTCAGAAAAACATCAATAGAGGAAAAAATGGGTAAAATGACACTGGCCAGGAAATAAGTTAGGTAAAGATGAATAAAACAAACAACTGAGGGCAGTGTTCAACAGACACCTACATTGAACACAAGCGAAACATCTGCGGATGAAATACTTCCTATTTTGTGCAATCGTAGAAATGGATACATACAGAAAACAACAAAATTGTCTTATTCTGAGCTAGCTAGATTCGGATAGGCTGCACATATCATTCAGGTAGTCAGTTTTCAGTTTTCAATCTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATCTTGGCGATCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGTTTCCCTTTCTCATTTTATG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAATCTTGGCGATCTAAAAAATTGTTGGAAACCAGAGCAAAAACTTCAAAATTGATTTGTATGTCAATGAAAAGTTTGATAACCTACCAGTGGGGCACGGACCCAGAAGGCCAGATTGATATTTGCTTCCCCAGTTGTCCATCAGTCGCTGCTTGTTCGATTGAGTTTGTTGAAAGCTAGAAATTCGAAAATTCAGAGTCGAGCAGTAATTACAGGCTTCGGTTCATAAAATGAGAAAGGGAAACA</canonical_amplicon>
		<polymorphic_amplicon>CAATCTTGGCGATCTAAAAAATTGTTGGAAACCAGAGCAAAAACTTCAAAATTGATTTRTATGTCAATGAAAAGTTTGATAACCTACCAGTGGGGCACGGACCCAGAAGGCCAGATTGATATTTGCTTCCCCAGTTGTCCATCAGTCGCTGCTTGTTCGATTGAGTTTGTTGAAAGCTAGAAATTCGAAAATTCAGAGTCGAGCAGTAATTACAGGCTTCGGTTCATAAAATGAGAAAGGGAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12316</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>438999</contig_pos>
        <strand></strand>
        <context>CAGTAAAAAG[C/T]RAATACACAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATCTTTGGCTGTAGCACTGTTGGAAACTTTGGTACGACGCAGTAAAAAG</left_flank>
        <right_flank>AAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAA</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTAATGAAAACTCTGGAGAAGCAAAGTGAAAATAAAAAATCTGGAACTAGTAAATAAGGTTTGAACGGAGGATTGATCGTTGTGGACACCCTACATTGGTCCGGCGACCAATGAGTGTTTACAGAAACGTGAGTATGGTACATTCTGTCCGTAGTTCAATTCTCCGTAGTTCACGCCTACAGTTTCAGGGCAGCCAATGAGCGGTGGACATGCGTGTGGAAAATTCTGTCTGCTCGGACAAACCGAAATTTTGATAGTACGAGCAACCCCCTCATGGCTGCAGGGAGGCCAGCGGGTGAGGAGGAGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGAATCAATGGTCAATTTGGACACGGACCAATCTATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTGTTGGAAACTTTGGTACGACGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACTCTTTCAATTAGTCAGACGACGTTGGAGGGTCTAGGAATCTTTAAGAGAATATCCTATTCCTTTAGAAATTTAGTTTTTCTTCACTTCTGAATCTGTTAAACCAGCAAGAAAAAGAAAATTTAAAAATTTATTTGAGT</canonical>
            <polymorphic>TATTAATGAAAACTCTGGAGAAGCAAAGTGAAAATAAAAAATCTGGAACTAGTAAATAAGGTTTGAACGGAGGATTGATCGTTGTGGACACCCTACATTGGTCCGGCGACCAATGAGTGTTTACAGAAACGTGAGTATGGTACATTCTGTCCGTAGTTCAATTCTCCGTAGTTCACGCCTACAGTTTCAGGGCAGCCAATGAGCGGTGGACATGCGTGTGGAAAATTCTGTCTGCTCGGACAAACCGAAATTTTGATAGTACGAGCAACCCCCTCATGGCTGCAGGGAGGCCAGCGGGTGAGGAGGAGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGAATCAATGGTCAATTTGGACACGGACCAATCTATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTGTTGGAAACTTTGGTACGACGCAGTAAAAAGYAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACTCTTTCAATTAGTCAGACGACGTTGGAGGGTCTAGGAATCTTTAAGAGAATATCCTATTCCTTTAGAAATTTAGTTTTTCTTCACTTCTGAATCTGTTAAACCAGCAAGAAAAAGAAAATTTAAAAATTTATTTGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATAGAGAGAACCAAATGAGA</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAGCGTTATTTTGGAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTGTTGGAAACTTTGGTACGACGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>ATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTGTTGGAAACTTTGGTACGACGCAGTAAAAAGYAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12317</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>438969</contig_pos>
        <strand></strand>
        <context>TGTAGCWCTG[T/A]TGGAAACTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTG</left_flank>
        <right_flank>TGGAAACTTTGGTACGACGCAGTAAAAAGCAAATACACAGTGTGCAGCCA</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATTCTGGTAGAAAGTGGGCAGTTTTCCGTATTAATGAAAACTCTGGAGAAGCAAAGTGAAAATAAAAAATCTGGAACTAGTAAATAAGGTTTGAACGGAGGATTGATCGTTGTGGACACCCTACATTGGTCCGGCGACCAATGAGTGTTTACAGAAACGTGAGTATGGTACATTCTGTCCGTAGTTCAATTCTCCGTAGTTCACGCCTACAGTTTCAGGGCAGCCAATGAGCGGTGGACATGCGTGTGGAAAATTCTGTCTGCTCGGACAAACCGAAATTTTGATAGTACGAGCAACCCCCTCATGGCTGCAGGGAGGCCAGCGGGTGAGGAGGAGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGAATCAATGGTCAATTTGGACACGGACCAATCTATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTGTTGGAAACTTTGGTACGACGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACTCTTTCAATTAGTCAGACGACGTTGGAGGGTCTAGGAATCTTTAAGAGAATATCCTATTCCTTTAGAAATTTAGTTTTTCTTCACTTCTGAATCTGTTAAACCAGCAA</canonical>
            <polymorphic>TCATTCTGGTAGAAAGTGGGCAGTTTTCCGTATTAATGAAAACTCTGGAGAAGCAAAGTGAAAATAAAAAATCTGGAACTAGTAAATAAGGTTTGAACGGAGGATTGATCGTTGTGGACACCCTACATTGGTCCGGCGACCAATGAGTGTTTACAGAAACGTGAGTATGGTACATTCTGTCCGTAGTTCAATTCTCCGTAGTTCACGCCTACAGTTTCAGGGCAGCCAATGAGCGGTGGACATGCGTGTGGAAAATTCTGTCTGCTCGGACAAACCGAAATTTTGATAGTACGAGCAACCCCCTCATGGCTGCAGGGAGGCCAGCGGGTGAGGAGGAGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGAATCAATGGTCAATTTGGACACGGACCAATCTATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTGWTGGAAACTTTGGTACGACGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACTCTTTCAATTAGTCAGACGACGTTGGAGGGTCTAGGAATCTTTAAGAGAATATCCTATTCCTTTAGAAATTTAGTTTTTCTTCACTTCTGAATCTGTTAAACCAGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>461 285 213 41</canonical_bands>
                <polymorphic_bands>461 326 213</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGATAGAGAGAACCAAATGAGA</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAGCGTTATTTTGGAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTGTTGGAAACTTTGGTACGACGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>ATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTGWTGGAAACTTTGGTACGACGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12318</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>438965</contig_pos>
        <strand></strand>
        <context>TGGCTGTAGC[A/T]CTGWTGGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGC</left_flank>
        <right_flank>CTGTTGGAAACTTTGGTACGACGCAGTAAAAAGCAAATACACAGTGTGCA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCGTCATTCTGGTAGAAAGTGGGCAGTTTTCCGTATTAATGAAAACTCTGGAGAAGCAAAGTGAAAATAAAAAATCTGGAACTAGTAAATAAGGTTTGAACGGAGGATTGATCGTTGTGGACACCCTACATTGGTCCGGCGACCAATGAGTGTTTACAGAAACGTGAGTATGGTACATTCTGTCCGTAGTTCAATTCTCCGTAGTTCACGCCTACAGTTTCAGGGCAGCCAATGAGCGGTGGACATGCGTGTGGAAAATTCTGTCTGCTCGGACAAACCGAAATTTTGATAGTACGAGCAACCCCCTCATGGCTGCAGGGAGGCCAGCGGGTGAGGAGGAGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGAATCAATGGTCAATTTGGACACGGACCAATCTATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTGTTGGAAACTTTGGTACGACGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACTCTTTCAATTAGTCAGACGACGTTGGAGGGTCTAGGAATCTTTAAGAGAATATCCTATTCCTTTAGAAATTTAGTTTTTCTTCACTTCTGAATCTGTTAAACCA</canonical>
            <polymorphic>CGCGTCATTCTGGTAGAAAGTGGGCAGTTTTCCGTATTAATGAAAACTCTGGAGAAGCAAAGTGAAAATAAAAAATCTGGAACTAGTAAATAAGGTTTGAACGGAGGATTGATCGTTGTGGACACCCTACATTGGTCCGGCGACCAATGAGTGTTTACAGAAACGTGAGTATGGTACATTCTGTCCGTAGTTCAATTCTCCGTAGTTCACGCCTACAGTTTCAGGGCAGCCAATGAGCGGTGGACATGCGTGTGGAAAATTCTGTCTGCTCGGACAAACCGAAATTTTGATAGTACGAGCAACCCCCTCATGGCTGCAGGGAGGCCAGCGGGTGAGGAGGAGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGAATCAATGGTCAATTTGGACACGGACCAATCTATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCWCTGTTGGAAACTTTGGTACGACGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACTCTTTCAATTAGTCAGACGACGTTGGAGGGTCTAGGAATCTTTAAGAGAATATCCTATTCCTTTAGAAATTTAGTTTTTCTTCACTTCTGAATCTGTTAAACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>457 285 217 41</canonical_bands>
                <polymorphic_bands>457 326 217</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>127 104 90 87 80 56 42 42 41 40 37 33 33 29 22 22 21 20 20 15 14 10 5 4 2 2 2</canonical_bands>
                <polymorphic_bands>131 127 104 87 80 56 42 42 40 37 33 33 29 22 22 21 20 20 15 14 10 5 4 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGATAGAGAGAACCAAATGAGA</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAGCGTTATTTTGGAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTGTTGGAAACTTTGGTACGACGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>ATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCWCTGTTGGAAACTTTGGTACGACGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12319</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>438805</contig_pos>
        <strand></strand>
        <context>GGGYGAGGAG[G/T]AGAAAACGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATAGTACGAGCAACCCCCTCATGGCTGCAGGGAGGCCAGCGGGTGAGGAG</left_flank>
        <right_flank>AGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAGTGATTGGGACACTTATCAAGATACCAAAGTTTATAGAGAACCATCCCCATCTTAACGGTGAGCCATCAGATTTTTTCTGTTTTGGAACCGGACCTATCTGTTACAATGGGAATCAGATCAGAGCTTAGATTCCTGTTAAGTTCGAAAACAGTTAACGCGTCATTCTGGTAGAAAGTGGGCAGTTTTCCGTATTAATGAAAACTCTGGAGAAGCAAAGTGAAAATAAAAAATCTGGAACTAGTAAATAAGGTTTGAACGGAGGATTGATCGTTGTGGACACCCTACATTGGTCCGGCGACCAATGAGTGTTTACAGAAACGTGAGTATGGTACATTCTGTCCGTAGTTCAATTCTCCGTAGTTCACGCCTACAGTTTCAGGGCAGCCAATGAGCGGTGGACATGCGTGTGGAAAATTCTGTCTGCTCGGACAAACCGAAATTTTGATAGTACGAGCAACCCCCTCATGGCTGCAGGGAGGCCAGCGGGTGAGGAGGAGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGAATCAATGGTCAATTTGGACACGGACCAATCTATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTGTTGGAAACTTTGGTACGACGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCAC</canonical>
            <polymorphic>AATAGTGATTGGGACACTTATCAAGATACCAAAGTTTATAGAGAACCATCCCCATCTTAACGGTGAGCCATCAGATTTTTTCTGTTTTGGAACCGGACCTATCTGTTACAATGGGAATCAGATCAGAGCTTAGATTCCTGTTAAGTTCGAAAACAGTTAACGCGTCATTCTGGTAGAAAGTGGGCAGTTTTCCGTATTAATGAAAACTCTGGAGAAGCAAAGTGAAAATAAAAAATCTGGAACTAGTAAATAAGGTTTGAACGGAGGATTGATCGTTGTGGACACCCTACATTGGTCCGGCGACCAATGAGTGTTTACAGAAACGTGAGTATGGTACATTCTGTCCGTAGTTCAATTCTCCGTAGTTCACGCCTACAGTTTCAGGGCAGCCAATGAGCGGTGGACATGCGTGTGGAAAATTCTGTCTGCTCGGACAAACCGAAATTTTGATAGTACGAGCAACCCCCTCATGGCTGCAGGGAGGCCAGCGGGTGAGGAGKAGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGAATCAATGGTCAATTTGGACACGGACCAATCTATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTGTTGGAAACTTTGGTACGACGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACAGAAACGTGAGTATGGTACA</pcr_primer_p1>
		<pcr_primer_p2>AAATTGACCATTGATTCACAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACAGAAACGTGAGTATGGTACATTCTGTCCGTAGTTCAATTCTCCGTAGTTCACGCCTACAGTTTCAGGGCAGCCAATGAGCGGTGGACATGCGTGTGGAAAATTCTGTCTGCTCGGACAAACCGAAATTTTGATAGTACGAGCAACCCCCTCATGGCTGCAGGGAGGCCAGCGGGTGAGGAGGAGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGAATCAATGGTCAATTT</canonical_amplicon>
		<polymorphic_amplicon>TACAGAAACGTGAGTATGGTACATTCTGTCCGTAGTTCAATTCTCCGTAGTTCACGCCTACAGTTTCAGGGCAGCCAATGAGCGGTGGACATGCGTGTGGAAAATTCTGTCTGCTCGGACAAACCGAAATTTTGATAGTACGAGCAACCCCCTCATGGCTGCAGGGAGGCCAGCGGGTGAGGAGKAGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGAATCAATGGTCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12320</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>438798</contig_pos>
        <strand></strand>
        <context>GGCCARCGGG[T/C]GAGGAGKAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATTTTGATAGTACGAGCAACCCCCTCATGGCTGCAGGGAGGCCAGCGGG</left_flank>
        <right_flank>GAGGAGGAGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGA</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGTAAGAATAGTGATTGGGACACTTATCAAGATACCAAAGTTTATAGAGAACCATCCCCATCTTAACGGTGAGCCATCAGATTTTTTCTGTTTTGGAACCGGACCTATCTGTTACAATGGGAATCAGATCAGAGCTTAGATTCCTGTTAAGTTCGAAAACAGTTAACGCGTCATTCTGGTAGAAAGTGGGCAGTTTTCCGTATTAATGAAAACTCTGGAGAAGCAAAGTGAAAATAAAAAATCTGGAACTAGTAAATAAGGTTTGAACGGAGGATTGATCGTTGTGGACACCCTACATTGGTCCGGCGACCAATGAGTGTTTACAGAAACGTGAGTATGGTACATTCTGTCCGTAGTTCAATTCTCCGTAGTTCACGCCTACAGTTTCAGGGCAGCCAATGAGCGGTGGACATGCGTGTGGAAAATTCTGTCTGCTCGGACAAACCGAAATTTTGATAGTACGAGCAACCCCCTCATGGCTGCAGGGAGGCCAGCGGGTGAGGAGGAGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGAATCAATGGTCAATTTGGACACGGACCAATCTATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTGTTGGAAACTTTGGTACGACGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGA</canonical>
            <polymorphic>GGGTAAGAATAGTGATTGGGACACTTATCAAGATACCAAAGTTTATAGAGAACCATCCCCATCTTAACGGTGAGCCATCAGATTTTTTCTGTTTTGGAACCGGACCTATCTGTTACAATGGGAATCAGATCAGAGCTTAGATTCCTGTTAAGTTCGAAAACAGTTAACGCGTCATTCTGGTAGAAAGTGGGCAGTTTTCCGTATTAATGAAAACTCTGGAGAAGCAAAGTGAAAATAAAAAATCTGGAACTAGTAAATAAGGTTTGAACGGAGGATTGATCGTTGTGGACACCCTACATTGGTCCGGCGACCAATGAGTGTTTACAGAAACGTGAGTATGGTACATTCTGTCCGTAGTTCAATTCTCCGTAGTTCACGCCTACAGTTTCAGGGCAGCCAATGAGCGGTGGACATGCGTGTGGAAAATTCTGTCTGCTCGGACAAACCGAAATTTTGATAGTACGAGCAACCCCCTCATGGCTGCAGGGAGGCCAGCGGGYGAGGAGGAGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGAATCAATGGTCAATTTGGACACGGACCAATCTATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTGTTGGAAACTTTGGTACGACGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>127 117 90 87 80 56 49 42 42 41 40 33 33 29 21 20 16 15 14 14 10 9 5 4 2 2 2</canonical_bands>
                <polymorphic_bands>127 117 113 90 87 56 49 42 42 41 40 33 29 21 20 16 15 14 14 10 9 5 4 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACAGAAACGTGAGTATGGTACA</pcr_primer_p1>
		<pcr_primer_p2>AAATTGACCATTGATTCACAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACAGAAACGTGAGTATGGTACATTCTGTCCGTAGTTCAATTCTCCGTAGTTCACGCCTACAGTTTCAGGGCAGCCAATGAGCGGTGGACATGCGTGTGGAAAATTCTGTCTGCTCGGACAAACCGAAATTTTGATAGTACGAGCAACCCCCTCATGGCTGCAGGGAGGCCAGCGGGTGAGGAGGAGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGAATCAATGGTCAATTT</canonical_amplicon>
		<polymorphic_amplicon>TACAGAAACGTGAGTATGGTACATTCTGTCCGTAGTTCAATTCTCCGTAGTTCACGCCTACAGTTTCAGGGCAGCCAATGAGCGGTGGACATGCGTGTGGAAAATTCTGTCTGCTCGGACAAACCGAAATTTTGATAGTACGAGCAACCCCCTCATGGCTGCAGGGAGGCCAGCGGGYGAGGAGGAGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGAATCAATGGTCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12321</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>438793</contig_pos>
        <strand></strand>
        <context>AGGGAGGCCA[G/A]CGGGYGAGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACCGAAATTTTGATAGTACGAGCAACCCCCTCATGGCTGCAGGGAGGCCA</left_flank>
        <right_flank>CGGGTGAGGAGGAGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCG</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAGAGGGTAAGAATAGTGATTGGGACACTTATCAAGATACCAAAGTTTATAGAGAACCATCCCCATCTTAACGGTGAGCCATCAGATTTTTTCTGTTTTGGAACCGGACCTATCTGTTACAATGGGAATCAGATCAGAGCTTAGATTCCTGTTAAGTTCGAAAACAGTTAACGCGTCATTCTGGTAGAAAGTGGGCAGTTTTCCGTATTAATGAAAACTCTGGAGAAGCAAAGTGAAAATAAAAAATCTGGAACTAGTAAATAAGGTTTGAACGGAGGATTGATCGTTGTGGACACCCTACATTGGTCCGGCGACCAATGAGTGTTTACAGAAACGTGAGTATGGTACATTCTGTCCGTAGTTCAATTCTCCGTAGTTCACGCCTACAGTTTCAGGGCAGCCAATGAGCGGTGGACATGCGTGTGGAAAATTCTGTCTGCTCGGACAAACCGAAATTTTGATAGTACGAGCAACCCCCTCATGGCTGCAGGGAGGCCAGCGGGTGAGGAGGAGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGAATCAATGGTCAATTTGGACACGGACCAATCTATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTGTTGGAAACTTTGGTACGACGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTT</canonical>
            <polymorphic>CGAGAGGGTAAGAATAGTGATTGGGACACTTATCAAGATACCAAAGTTTATAGAGAACCATCCCCATCTTAACGGTGAGCCATCAGATTTTTTCTGTTTTGGAACCGGACCTATCTGTTACAATGGGAATCAGATCAGAGCTTAGATTCCTGTTAAGTTCGAAAACAGTTAACGCGTCATTCTGGTAGAAAGTGGGCAGTTTTCCGTATTAATGAAAACTCTGGAGAAGCAAAGTGAAAATAAAAAATCTGGAACTAGTAAATAAGGTTTGAACGGAGGATTGATCGTTGTGGACACCCTACATTGGTCCGGCGACCAATGAGTGTTTACAGAAACGTGAGTATGGTACATTCTGTCCGTAGTTCAATTCTCCGTAGTTCACGCCTACAGTTTCAGGGCAGCCAATGAGCGGTGGACATGCGTGTGGAAAATTCTGTCTGCTCGGACAAACCGAAATTTTGATAGTACGAGCAACCCCCTCATGGCTGCAGGGAGGCCARCGGGTGAGGAGGAGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGAATCAATGGTCAATTTGGACACGGACCAATCTATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTGTTGGAAACTTTGGTACGACGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 227 201 74</canonical_bands>
                <polymorphic_bands>725 201 74</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACAGAAACGTGAGTATGGTACA</pcr_primer_p1>
		<pcr_primer_p2>AAATTGACCATTGATTCACAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACAGAAACGTGAGTATGGTACATTCTGTCCGTAGTTCAATTCTCCGTAGTTCACGCCTACAGTTTCAGGGCAGCCAATGAGCGGTGGACATGCGTGTGGAAAATTCTGTCTGCTCGGACAAACCGAAATTTTGATAGTACGAGCAACCCCCTCATGGCTGCAGGGAGGCCAGCGGGTGAGGAGGAGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGAATCAATGGTCAATTT</canonical_amplicon>
		<polymorphic_amplicon>TACAGAAACGTGAGTATGGTACATTCTGTCCGTAGTTCAATTCTCCGTAGTTCACGCCTACAGTTTCAGGGCAGCCAATGAGCGGTGGACATGCGTGTGGAAAATTCTGTCTGCTCGGACAAACCGAAATTTTGATAGTACGAGCAACCCCCTCATGGCTGCAGGGAGGCCARCGGGTGAGGAGGAGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGAATCAATGGTCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12323</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>557319</contig_pos>
        <strand>+</strand>
        <context>AAAGTTTCAA[A/T]GTGAAAGCCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAATTTTACAAGTACAAAAATTGTTTTTTCCAACGACCAAAGTTTCAA</left_flank>
        <right_flank>GTGAAAGCCGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGAAGACGTCTATTTTTCAGTGATGATCGAAAACCATCTGTCACCCAAAACTTGTCGGAAATAATGCTCGAGGTGAGTCCTATTTTCATTATAAATTCTGCGTTGGGGTCAAGTACAACTTCCTTATTCTTTCGAGTTTCATTTCTTCTTCTGTTTTCTTTTTTCTTAGTCTTCCCCACTTTTGTTGTCTGTGTTTGACGTTCCTTGAATTTGAAAGTGGGAATTTTATATAGTCTATATAAAAAATTATTAACAAGGAGTAATGAAACAAAAAAAAAATTGAAGTTGAAAAATGATTTTTCGAAATTTCGAAATCAAGAGGTCCTGGCCGGGCTCTCAAGACCTTCAAATTTAGTTTAAAAATTCTCAGGAAATTATTTTTTGGCAACACGGGTCTATCGGACAGGGCCGAGAGAATTTTTAAAAAGCTGGGCCCGTTTTTTTTTCAAAAAATTTTACAAGTACAAAAATTGTTTTTTCCAACGACCAAAGTTTCAAAGTGAAAGCCGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTTGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTTACTGCATTTTTTCTTGTTCCTCTCCTTTTTTCTAGAATTGTTTTTCTATTGACATTTTGCTATTTCTTCGCTCACCCACAGACATCAACGCTTTTTTATTTCCA</canonical>
            <polymorphic>ACGAAGACGTCTATTTTTCAGTGATGATCGAAAACCATCTGTCACCCAAAACTTGTCGGAAATAATGCTCGAGGTGAGTCCTATTTTCATTATAAATTCTGCGTTGGGGTCAAGTACAACTTCCTTATTCTTTCGAGTTTCATTTCTTCTTCTGTTTTCTTTTTTCTTAGTCTTCCCCACTTTTGTTGTCTGTGTTTGACGTTCCTTGAATTTGAAAGTGGGAATTTTATATAGTCTATATAAAAAATTATTAACAAGGAGTAATGAAACAAAAAAAAAATTGAAGTTGAAAAATGATTTTTCGAAATTTCGAAATCAAGAGGTCCTGGCCGGGCTCTCAAGACCTTCAAATTTAGTTTAAAAATTCTCAGGAAATTATTTTTTGGCAACACGGGTCTATCGGACAGGGCCGAGAGAATTTTTAAAAAGCTGGGCCCGTTTTTTTTTCAAAAAATTTTACAAGTACAAAAATTGTTTTTTCCAACGACCAAAGTTTCAAWGTGAAAGCCGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTTGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTTACTGCATTTTTTCTTGTTCCTCTCCTTTTTTCTAGAATTGTTTTTCTATTGACATTTTGCTATTTCTTCGCTCACCCACAGACATCAACGCTTTTTTATTTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTCAAATTTAGTTTAAAAATTCTC</pcr_primer_p1>
		<pcr_primer_p2>CGCCAAATTTAGCATAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>CCTTCAAATTTAGTTTAAAAATTCTCAGGAAATTATTTTTTGGCAACACGGGTCTATCGGACAGGGCCGAGAGAATTTTTAAAAAGCTGGGCCCGTTTTTTTTTCAAAAAATTTTACAAGTACAAAAATTGTTTTTTCCAACGACCAAAGTTTCAAAGTGAAAGCCGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTTGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCG</canonical_amplicon>
		<polymorphic_amplicon>CCTTCAAATTTAGTTTAAAAATTCTCAGGAAATTATTTTTTGGCAACACGGGTCTATCGGACAGGGCCGAGAGAATTTTTAAAAAGCTGGGCCCGTTTTTTTTTCAAAAAATTTTACAAGTACAAAAATTGTTTTTTCCAACGACCAAAGTTTCAAWGTGAAAGCCGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTTGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12324</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>557393</contig_pos>
        <strand>+</strand>
        <context>CGAGGGAATT[C/T]GCTTTAAATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATT</left_flank>
        <right_flank>GCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGTCCTATTTTCATTATAAATTCTGCGTTGGGGTCAAGTACAACTTCCTTATTCTTTCGAGTTTCATTTCTTCTTCTGTTTTCTTTTTTCTTAGTCTTCCCCACTTTTGTTGTCTGTGTTTGACGTTCCTTGAATTTGAAAGTGGGAATTTTATATAGTCTATATAAAAAATTATTAACAAGGAGTAATGAAACAAAAAAAAAATTGAAGTTGAAAAATGATTTTTCGAAATTTCGAAATCAAGAGGTCCTGGCCGGGCTCTCAAGACCTTCAAATTTAGTTTAAAAATTCTCAGGAAATTATTTTTTGGCAACACGGGTCTATCGGACAGGGCCGAGAGAATTTTTAAAAAGCTGGGCCCGTTTTTTTTTCAAAAAATTTTACAAGTACAAAAATTGTTTTTTCCAACGACCAAAGTTTCAAAGTGAAAGCCGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTTGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTTACTGCATTTTTTCTTGTTCCTCTCCTTTTTTCTAGAATTGTTTTTCTATTGACATTTTGCTATTTCTTCGCTCACCCACAGACATCAACGCTTTTTTATTTCCACTTTTTAAACTTCCCGGCTTCACAGACACAAATTGAATTTTTATTCCCTTTTATCTCCGATCCTTCTAATCAGT</canonical>
            <polymorphic>TGAGTCCTATTTTCATTATAAATTCTGCGTTGGGGTCAAGTACAACTTCCTTATTCTTTCGAGTTTCATTTCTTCTTCTGTTTTCTTTTTTCTTAGTCTTCCCCACTTTTGTTGTCTGTGTTTGACGTTCCTTGAATTTGAAAGTGGGAATTTTATATAGTCTATATAAAAAATTATTAACAAGGAGTAATGAAACAAAAAAAAAATTGAAGTTGAAAAATGATTTTTCGAAATTTCGAAATCAAGAGGTCCTGGCCGGGCTCTCAAGACCTTCAAATTTAGTTTAAAAATTCTCAGGAAATTATTTTTTGGCAACACGGGTCTATCGGACAGGGCCGAGAGAATTTTTAAAAAGCTGGGCCCGTTTTTTTTTCAAAAAATTTTACAAGTACAAAAATTGTTTTTTCCAACGACCAAAGTTTCAAAGTGAAAGCCGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTYGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTTACTGCATTTTTTCTTGTTCCTCTCCTTTTTTCTAGAATTGTTTTTCTATTGACATTTTGCTATTTCTTCGCTCACCCACAGACATCAACGCTTTTTTATTTCCACTTTTTAAACTTCCCGGCTTCACAGACACAAATTGAATTTTTATTCCCTTTTATCTCCGATCCTTCTAATCAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>369 117 114 83 58 54 44 39 36 26 20 14 13 13</canonical_bands>
                <polymorphic_bands>369 143 114 83 58 54 44 39 36 20 14 13 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGCCGAAACTTGAGTATTATT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTTTACGGGAATAAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>170</pcr_amplicon_size>
		<canonical_amplicon>AAAGCCGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTTGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAGCCGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTYGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12325</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>557455</contig_pos>
        <strand>+</strand>
        <context>ACTTTTTAGT[C/G]TCAAATGGYT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGT</left_flank>
        <right_flank>TCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTCATTTCTTCTTCTGTTTTCTTTTTTCTTAGTCTTCCCCACTTTTGTTGTCTGTGTTTGACGTTCCTTGAATTTGAAAGTGGGAATTTTATATAGTCTATATAAAAAATTATTAACAAGGAGTAATGAAACAAAAAAAAAATTGAAGTTGAAAAATGATTTTTCGAAATTTCGAAATCAAGAGGTCCTGGCCGGGCTCTCAAGACCTTCAAATTTAGTTTAAAAATTCTCAGGAAATTATTTTTTGGCAACACGGGTCTATCGGACAGGGCCGAGAGAATTTTTAAAAAGCTGGGCCCGTTTTTTTTTCAAAAAATTTTACAAGTACAAAAATTGTTTTTTCCAACGACCAAAGTTTCAAAGTGAAAGCCGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTTGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTTACTGCATTTTTTCTTGTTCCTCTCCTTTTTTCTAGAATTGTTTTTCTATTGACATTTTGCTATTTCTTCGCTCACCCACAGACATCAACGCTTTTTTATTTCCACTTTTTAAACTTCCCGGCTTCACAGACACAAATTGAATTTTTATTCCCTTTTATCTCCGATCCTTCTAATCAGTTACGTAAAATTTCCAGGCAATACATTATGAAGATGTGAACTTGGTGGAAAGGTTGCTGACGG</canonical>
            <polymorphic>GTTTCATTTCTTCTTCTGTTTTCTTTTTTCTTAGTCTTCCCCACTTTTGTTGTCTGTGTTTGACGTTCCTTGAATTTGAAAGTGGGAATTTTATATAGTCTATATAAAAAATTATTAACAAGGAGTAATGAAACAAAAAAAAAATTGAAGTTGAAAAATGATTTTTCGAAATTTCGAAATCAAGAGGTCCTGGCCGGGCTCTCAAGACCTTCAAATTTAGTTTAAAAATTCTCAGGAAATTATTTTTTGGCAACACGGGTCTATCGGACAGGGCCGAGAGAATTTTTAAAAAGCTGGGCCCGTTTTTTTTTCAAAAAATTTTACAAGTACAAAAATTGTTTTTTCCAACGACCAAAGTTTCAAAGTGAAAGCCGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTTGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTSTCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTTACTGCATTTTTTCTTGTTCCTCTCCTTTTTTCTAGAATTGTTTTTCTATTGACATTTTGCTATTTCTTCGCTCACCCACAGACATCAACGCTTTTTTATTTCCACTTTTTAAACTTCCCGGCTTCACAGACACAAATTGAATTTTTATTCCCTTTTATCTCCGATCCTTCTAATCAGTTACGTAAAATTTCCAGGCAATACATTATGAAGATGTGAACTTGGTGGAAAGGTTGCTGACGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>186 171 123 112 83 81 61 43 26 26 22 16 15 10 9 6 6 4</canonical_bands>
                <polymorphic_bands>196 171 123 112 83 81 61 43 26 26 22 16 15 9 6 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAAACTTGAGTATTATTTTCGTA</pcr_primer_p1>
		<pcr_primer_p2>GACGAAAAAGTTCATTTGTCA</pcr_primer_p2>
		<pcr_amplicon_size>339</pcr_amplicon_size>
		<canonical_amplicon>CGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTTGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTC</canonical_amplicon>
		<polymorphic_amplicon>CGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTTGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTSTCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12326</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>557464</contig_pos>
        <strand>+</strand>
        <context>TSTCAAATGG[C/T]TAATTTTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGG</left_flank>
        <right_flank>TAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCTTCTGTTTTCTTTTTTCTTAGTCTTCCCCACTTTTGTTGTCTGTGTTTGACGTTCCTTGAATTTGAAAGTGGGAATTTTATATAGTCTATATAAAAAATTATTAACAAGGAGTAATGAAACAAAAAAAAAATTGAAGTTGAAAAATGATTTTTCGAAATTTCGAAATCAAGAGGTCCTGGCCGGGCTCTCAAGACCTTCAAATTTAGTTTAAAAATTCTCAGGAAATTATTTTTTGGCAACACGGGTCTATCGGACAGGGCCGAGAGAATTTTTAAAAAGCTGGGCCCGTTTTTTTTTCAAAAAATTTTACAAGTACAAAAATTGTTTTTTCCAACGACCAAAGTTTCAAAGTGAAAGCCGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTTGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTTACTGCATTTTTTCTTGTTCCTCTCCTTTTTTCTAGAATTGTTTTTCTATTGACATTTTGCTATTTCTTCGCTCACCCACAGACATCAACGCTTTTTTATTTCCACTTTTTAAACTTCCCGGCTTCACAGACACAAATTGAATTTTTATTCCCTTTTATCTCCGATCCTTCTAATCAGTTACGTAAAATTTCCAGGCAATACATTATGAAGATGTGAACTTGGTGGAAAGGTTGCTGACGGCGCATAGTT</canonical>
            <polymorphic>CTTCTTCTGTTTTCTTTTTTCTTAGTCTTCCCCACTTTTGTTGTCTGTGTTTGACGTTCCTTGAATTTGAAAGTGGGAATTTTATATAGTCTATATAAAAAATTATTAACAAGGAGTAATGAAACAAAAAAAAAATTGAAGTTGAAAAATGATTTTTCGAAATTTCGAAATCAAGAGGTCCTGGCCGGGCTCTCAAGACCTTCAAATTTAGTTTAAAAATTCTCAGGAAATTATTTTTTGGCAACACGGGTCTATCGGACAGGGCCGAGAGAATTTTTAAAAAGCTGGGCCCGTTTTTTTTTCAAAAAATTTTACAAGTACAAAAATTGTTTTTTCCAACGACCAAAGTTTCAAAGTGAAAGCCGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTTGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGGYTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTTACTGCATTTTTTCTTGTTCCTCTCCTTTTTTCTAGAATTGTTTTTCTATTGACATTTTGCTATTTCTTCGCTCACCCACAGACATCAACGCTTTTTTATTTCCACTTTTTAAACTTCCCGGCTTCACAGACACAAATTGAATTTTTATTCCCTTTTATCTCCGATCCTTCTAATCAGTTACGTAAAATTTCCAGGCAATACATTATGAAGATGTGAACTTGGTGGAAAGGTTGCTGACGGCGCATAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>373 184 137 128 75 73 20 5 5</canonical_bands>
                <polymorphic_bands>510 184 128 75 73 20 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAAACTTGAGTATTATTTTCGTA</pcr_primer_p1>
		<pcr_primer_p2>GACGAAAAAGTTCATTTGTCA</pcr_primer_p2>
		<pcr_amplicon_size>339</pcr_amplicon_size>
		<canonical_amplicon>CGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTTGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTC</canonical_amplicon>
		<polymorphic_amplicon>CGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTTGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGGYTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12327</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>557512</contig_pos>
        <strand></strand>
        <context>GTAAAAATTG[A/G]TTTTTTWAAR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGCTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTG</left_flank>
        <right_flank>TTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTGACGTTCCTTGAATTTGAAAGTGGGAATTTTATATAGTCTATATAAAAAATTATTAACAAGGAGTAATGAAACAAAAAAAAAATTGAAGTTGAAAAATGATTTTTCGAAATTTCGAAATCAAGAGGTCCTGGCCGGGCTCTCAAGACCTTCAAATTTAGTTTAAAAATTCTCAGGAAATTATTTTTTGGCAACACGGGTCTATCGGACAGGGCCGAGAGAATTTTTAAAAAGCTGGGCCCGTTTTTTTTTCAAAAAATTTTACAAGTACAAAAATTGTTTTTTCCAACGACCAAAGTTTCAAAGTGAAAGCCGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTTGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTTACTGCATTTTTTCTTGTTCCTCTCCTTTTTTCTAGAATTGTTTTTCTATTGACATTTTGCTATTTCTTCGCTCACCCACAGACATCAACGCTTTTTTATTTCCACTTTTTAAACTTCCCGGCTTCACAGACACAAATTGAATTTTTATTCCCTTTTATCTCCGATCCTTCTAATCAGTTACGTAAAATTTCCAGGCAATACATTATGAAGATGTGAACTTGGTGGAAAGGTTGCTGACGGCGCATAGTTCAAAACAACCAATGTCAACATCGCCGTCAATTGGTAATTCATAGGAAA</canonical>
            <polymorphic>GTTTGACGTTCCTTGAATTTGAAAGTGGGAATTTTATATAGTCTATATAAAAAATTATTAACAAGGAGTAATGAAACAAAAAAAAAATTGAAGTTGAAAAATGATTTTTCGAAATTTCGAAATCAAGAGGTCCTGGCCGGGCTCTCAAGACCTTCAAATTTAGTTTAAAAATTCTCAGGAAATTATTTTTTGGCAACACGGGTCTATCGGACAGGGCCGAGAGAATTTTTAAAAAGCTGGGCCCGTTTTTTTTTCAAAAAATTTTACAAGTACAAAAATTGTTTTTTCCAACGACCAAAGTTTCAAAGTGAAAGCCGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTTGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGRTTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTTACTGCATTTTTTCTTGTTCCTCTCCTTTTTTCTAGAATTGTTTTTCTATTGACATTTTGCTATTTCTTCGCTCACCCACAGACATCAACGCTTTTTTATTTCCACTTTTTAAACTTCCCGGCTTCACAGACACAAATTGAATTTTTATTCCCTTTTATCTCCGATCCTTCTAATCAGTTACGTAAAATTTCCAGGCAATACATTATGAAGATGTGAACTTGGTGGAAAGGTTGCTGACGGCGCATAGTTCAAAACAACCAATGTCAACATCGCCGTCAATTGGTAATTCATAGGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGCTAAATTTGGCGTTTT</pcr_primer_p1>
		<pcr_primer_p2>GACGAAAAAGTTCATTTGTCA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTC</canonical_amplicon>
		<polymorphic_amplicon>TATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGRTTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12328</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>557519</contig_pos>
        <strand></strand>
        <context>TTGRTTTTTT[A/T]AARCTATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTT</left_flank>
        <right_flank>AAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCCTTGAATTTGAAAGTGGGAATTTTATATAGTCTATATAAAAAATTATTAACAAGGAGTAATGAAACAAAAAAAAAATTGAAGTTGAAAAATGATTTTTCGAAATTTCGAAATCAAGAGGTCCTGGCCGGGCTCTCAAGACCTTCAAATTTAGTTTAAAAATTCTCAGGAAATTATTTTTTGGCAACACGGGTCTATCGGACAGGGCCGAGAGAATTTTTAAAAAGCTGGGCCCGTTTTTTTTTCAAAAAATTTTACAAGTACAAAAATTGTTTTTTCCAACGACCAAAGTTTCAAAGTGAAAGCCGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTTGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTTACTGCATTTTTTCTTGTTCCTCTCCTTTTTTCTAGAATTGTTTTTCTATTGACATTTTGCTATTTCTTCGCTCACCCACAGACATCAACGCTTTTTTATTTCCACTTTTTAAACTTCCCGGCTTCACAGACACAAATTGAATTTTTATTCCCTTTTATCTCCGATCCTTCTAATCAGTTACGTAAAATTTCCAGGCAATACATTATGAAGATGTGAACTTGGTGGAAAGGTTGCTGACGGCGCATAGTTCAAAACAACCAATGTCAACATCGCCGTCAATTGGTAATTCATAGGAAACTCGGGT</canonical>
            <polymorphic>GTTCCTTGAATTTGAAAGTGGGAATTTTATATAGTCTATATAAAAAATTATTAACAAGGAGTAATGAAACAAAAAAAAAATTGAAGTTGAAAAATGATTTTTCGAAATTTCGAAATCAAGAGGTCCTGGCCGGGCTCTCAAGACCTTCAAATTTAGTTTAAAAATTCTCAGGAAATTATTTTTTGGCAACACGGGTCTATCGGACAGGGCCGAGAGAATTTTTAAAAAGCTGGGCCCGTTTTTTTTTCAAAAAATTTTACAAGTACAAAAATTGTTTTTTCCAACGACCAAAGTTTCAAAGTGAAAGCCGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTTGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTWAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTTACTGCATTTTTTCTTGTTCCTCTCCTTTTTTCTAGAATTGTTTTTCTATTGACATTTTGCTATTTCTTCGCTCACCCACAGACATCAACGCTTTTTTATTTCCACTTTTTAAACTTCCCGGCTTCACAGACACAAATTGAATTTTTATTCCCTTTTATCTCCGATCCTTCTAATCAGTTACGTAAAATTTCCAGGCAATACATTATGAAGATGTGAACTTGGTGGAAAGGTTGCTGACGGCGCATAGTTCAAAACAACCAATGTCAACATCGCCGTCAATTGGTAATTCATAGGAAACTCGGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>307 194 159 156 120 64</canonical_bands>
                <polymorphic_bands>427 194 159 156 64</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>195 166 141 112 107 105 64 51 44 15</canonical_bands>
                <polymorphic_bands>271 195 141 112 107 64 51 44 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTTTCTTATTCCCGTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGACACAAGTCATCAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTT</canonical_amplicon>
		<polymorphic_amplicon>AATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTWAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12329</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>557594</contig_pos>
        <strand></strand>
        <context>CTCTAGGAAT[G/T]CCCTTTTGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAAT</left_flank>
        <right_flank>CCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATTGAAGTTGAAAAATGATTTTTCGAAATTTCGAAATCAAGAGGTCCTGGCCGGGCTCTCAAGACCTTCAAATTTAGTTTAAAAATTCTCAGGAAATTATTTTTTGGCAACACGGGTCTATCGGACAGGGCCGAGAGAATTTTTAAAAAGCTGGGCCCGTTTTTTTTTCAAAAAATTTTACAAGTACAAAAATTGTTTTTTCCAACGACCAAAGTTTCAAAGTGAAAGCCGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTTGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTTACTGCATTTTTTCTTGTTCCTCTCCTTTTTTCTAGAATTGTTTTTCTATTGACATTTTGCTATTTCTTCGCTCACCCACAGACATCAACGCTTTTTTATTTCCACTTTTTAAACTTCCCGGCTTCACAGACACAAATTGAATTTTTATTCCCTTTTATCTCCGATCCTTCTAATCAGTTACGTAAAATTTCCAGGCAATACATTATGAAGATGTGAACTTGGTGGAAAGGTTGCTGACGGCGCATAGTTCAAAACAACCAATGTCAACATCGCCGTCAATTGGTAATTCATAGGAAACTCGGGTGGACGCCCCTGAATTGATGAGCCCTCGGCACGAGCCTTCTCTATTTCTCCCCTATCTTTCAGGTAGCACAAACAC</canonical>
            <polymorphic>AAAAATTGAAGTTGAAAAATGATTTTTCGAAATTTCGAAATCAAGAGGTCCTGGCCGGGCTCTCAAGACCTTCAAATTTAGTTTAAAAATTCTCAGGAAATTATTTTTTGGCAACACGGGTCTATCGGACAGGGCCGAGAGAATTTTTAAAAAGCTGGGCCCGTTTTTTTTTCAAAAAATTTTACAAGTACAAAAATTGTTTTTTCCAACGACCAAAGTTTCAAAGTGAAAGCCGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTTGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATKCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTTACTGCATTTTTTCTTGTTCCTCTCCTTTTTTCTAGAATTGTTTTTCTATTGACATTTTGCTATTTCTTCGCTCACCCACAGACATCAACGCTTTTTTATTTCCACTTTTTAAACTTCCCGGCTTCACAGACACAAATTGAATTTTTATTCCCTTTTATCTCCGATCCTTCTAATCAGTTACGTAAAATTTCCAGGCAATACATTATGAAGATGTGAACTTGGTGGAAAGGTTGCTGACGGCGCATAGTTCAAAACAACCAATGTCAACATCGCCGTCAATTGGTAATTCATAGGAAACTCGGGTGGACGCCCCTGAATTGATGAGCCCTCGGCACGAGCCTTCTCTATTTCTCCCCTATCTTTCAGGTAGCACAAACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTTCTTATTCCCGTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGACACAAGTCATCAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTT</canonical_amplicon>
		<polymorphic_amplicon>AATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATKCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12330</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>557638</contig_pos>
        <strand></strand>
        <context>CAAAAAAAGA[G/T]TCACTCGTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGA</left_flank>
        <right_flank>TCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGGTCCTGGCCGGGCTCTCAAGACCTTCAAATTTAGTTTAAAAATTCTCAGGAAATTATTTTTTGGCAACACGGGTCTATCGGACAGGGCCGAGAGAATTTTTAAAAAGCTGGGCCCGTTTTTTTTTCAAAAAATTTTACAAGTACAAAAATTGTTTTTTCCAACGACCAAAGTTTCAAAGTGAAAGCCGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTTGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTTACTGCATTTTTTCTTGTTCCTCTCCTTTTTTCTAGAATTGTTTTTCTATTGACATTTTGCTATTTCTTCGCTCACCCACAGACATCAACGCTTTTTTATTTCCACTTTTTAAACTTCCCGGCTTCACAGACACAAATTGAATTTTTATTCCCTTTTATCTCCGATCCTTCTAATCAGTTACGTAAAATTTCCAGGCAATACATTATGAAGATGTGAACTTGGTGGAAAGGTTGCTGACGGCGCATAGTTCAAAACAACCAATGTCAACATCGCCGTCAATTGGTAATTCATAGGAAACTCGGGTGGACGCCCCTGAATTGATGAGCCCTCGGCACGAGCCTTCTCTATTTCTCCCCTATCTTTCAGGTAGCACAAACACACTGACCGATCTCGCGCAACGAAGACATGGCGCGGGGGCGCATC</canonical>
            <polymorphic>GAGGTCCTGGCCGGGCTCTCAAGACCTTCAAATTTAGTTTAAAAATTCTCAGGAAATTATTTTTTGGCAACACGGGTCTATCGGACAGGGCCGAGAGAATTTTTAAAAAGCTGGGCCCGTTTTTTTTTCAAAAAATTTTACAAGTACAAAAATTGTTTTTTCCAACGACCAAAGTTTCAAAGTGAAAGCCGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTTGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAKTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTTACTGCATTTTTTCTTGTTCCTCTCCTTTTTTCTAGAATTGTTTTTCTATTGACATTTTGCTATTTCTTCGCTCACCCACAGACATCAACGCTTTTTTATTTCCACTTTTTAAACTTCCCGGCTTCACAGACACAAATTGAATTTTTATTCCCTTTTATCTCCGATCCTTCTAATCAGTTACGTAAAATTTCCAGGCAATACATTATGAAGATGTGAACTTGGTGGAAAGGTTGCTGACGGCGCATAGTTCAAAACAACCAATGTCAACATCGCCGTCAATTGGTAATTCATAGGAAACTCGGGTGGACGCCCCTGAATTGATGAGCCCTCGGCACGAGCCTTCTCTATTTCTCCCCTATCTTTCAGGTAGCACAAACACACTGACCGATCTCGCGCAACGAAGACATGGCGCGGGGGCGCATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>499 247 247 7</canonical_bands>
                <polymorphic_bands>506 247 247</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>499 494 7</canonical_bands>
                <polymorphic_bands>506 494</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTTTCTTATTCCCGTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGACACAAGTCATCAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTT</canonical_amplicon>
		<polymorphic_amplicon>AATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAKTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12331</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>560944</contig_pos>
        <strand></strand>
        <context>AACGTRGAAC[A/G]AAATTTTGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGTGCAATTTAGGAAAGCACGCAAATTTGAAAAAAATAAAACGTAGAAC</left_flank>
        <right_flank>AAATTTTGTAATAAAAATAAAACGATTACAATTCATTGGGAAAATATATC</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATGGCTATGATCCAAATACACCAGCATCGTGTCATTGTAAAGGAAACTGTACGGCGACTGGTAATATACCACTGACGTCAATCATTCCAAGGTGAGTCGGGTACTTCTTTTTCATCAATGATCTTCTTCAAAGAGCTTCGTGATAAGAATATATAAAAAGGGCTGTATTTTAGGTCCGCGTTTTTCTTTTTTTTTCATTTATGAAGATCCCAAATGATTTCAGAACGCACTCCATGACGCCAGAATTGTGTTCAACGTGCTCACAGCTTCGTGTCGTGTCAATTGTGGATCAGACGCCGTTGGGTGTTGCAGTGAGGTCGCAGTCAAGCGAGCTGATAGCATTGCTCATCGCTTACGGAGGAGATGTCAATTTAGGTACGCGGAGGAGAGAGGTCTTGCAGAATTTCGGGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAAAATGTGCAATTTAGGAAAGCACGCAAATTTGAAAAAAATAAAACGTAGAACAAAATTTTGTAATAAAAATAAAACGATTACAATTCATTGGGAAAATATATCAAAAATGCCAAAAATAAATTTATCAAACGAAAACCTCGAAAAAGTGCCAAAAATGAGGAAAAAAGTGTTATGTAATTCAAAATTCGATTGAGAAACACTGCATAATCTCTTATTTAGCCGTATACTTTGACTGTCAAAATTGAAATCTGAACAAACGTTCCAGAAAATTTTCAATGATTGGCATTAAGCCAAGAGTTGTGTTGTTGGGAGCTGCTCATATCGTTTCGTTGAATTTGTATTAGATGCTCAGAAGTGTTTTATGAAACTTTCTGACAAATTGAAAAATTCTGGACCGTTTTTTCAAGACCGTTTTGCAATTTTGACTACTTCCCAATCAGGAATTCAAAAAATGATTTATTCTATGTATCTGCTTCAAAATTCTATTTCAAACACTGTTATTCAGCTATTATTATTAATATCCCCCAGAAAACTCTGTATGATAGATATCTT</canonical>
            <polymorphic>AAAAATGGCTATGATCCAAATACACCAGCATCGTGTCATTGTAAAGGAAACTGTACGGCGACTGGTAATATACCACTGACGTCAATCATTCCAAGGTGAGTCGGGTACTTCTTTTTCATCAATGATCTTCTTCAAAGAGCTTCGTGATAAGAATATATAAAAAGGGCTGTATTTTAGGTCCGCGTTTTTCTTTTTTTTTCATTTATGAAGATCCCAAATGATTTCAGAACGCACTCCATGACGCCAGAATTGTGTTCAACGTGCTCACAGCTTCGTGTCGTGTCAATTGTGGATCAGACGCCGTTGGGTGTTGCAGTGAGGTCGCAGTCAAGCGAGCTGATAGCATTGCTCATCGCTTACGGAGGAGATGTCAATTTAGGTACGCGGAGGAGAGAGGTCTTGCAGAATTTCGGGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAAAATGTGCAATTTAGGAAAGCACGCAAATTTGAAAAAAATAAAACGTAGAACRAAATTTTGTAATAAAAATAAAACGATTACAATTCATTGGGAAAATATATCAAAAATGCCAAAAATAAATTTATCAAACGAAAACCTCGAAAAAGTGCCAAAAATGAGGAAAAAAGTGTTATGTAATTCAAAATTCGATTGAGAAACACTGCATAATCTCTTATTTAGCCGTATACTTTGACTGTCAAAATTGAAATCTGAACAAACGTTCCAGAAAATTTTCAATGATTGGCATTAAGCCAAGAGTTGTGTTGTTGGGAGCTGCTCATATCGTTTCGTTGAATTTGTATTAGATGCTCAGAAGTGTTTTATGAAACTTTCTGACAAATTGAAAAATTCTGGACCGTTTTTTCAAGACCGTTTTGCAATTTTGACTACTTCCCAATCAGGAATTCAAAAAATGATTTATTCTATGTATCTGCTTCAAAATTCTATTTCAAACACTGTTATTCAGCTATTATTATTAATATCCCCCAGAAAACTCTGTATGATAGATATCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAAGATCTTGGGAGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>GAGATTATGCAGTGTTTCTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAAAATGTGCAATTTAGGAAAGCACGCAAATTTGAAAAAAATAAAACGTAGAACAAAATTTTGTAATAAAAATAAAACGATTACAATTCATTGGGAAAATATATCAAAAATGCCAAAAATAAATTTATCAAACGAAAACCTCGAAAAAGTGCCAAAAATGAGGAAAAAAGTGTTATGTAATTCAAAATTCGATTGAGAAACACTGCATAATCTC</canonical_amplicon>
		<polymorphic_amplicon>GAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAAAATGTGCAATTTAGGAAAGCACGCAAATTTGAAAAAAATAAAACGTAGAACRAAATTTTGTAATAAAAATAAAACGATTACAATTCATTGGGAAAATATATCAAAAATGCCAAAAATAAATTTATCAAACGAAAACCTCGAAAAAGTGCCAAAAATGAGGAAAAAAGTGTTATGTAATTCAAAATTCGATTGAGAAACACTGCATAATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12332</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>560939</contig_pos>
        <strand></strand>
        <context>AATAAAACGT[A/G]GAACRAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAAAATGTGCAATTTAGGAAAGCACGCAAATTTGAAAAAAATAAAACGT</left_flank>
        <right_flank>GAACAAAATTTTGTAATAAAAATAAAACGATTACAATTCATTGGGAAAAT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTCAAAAATGGCTATGATCCAAATACACCAGCATCGTGTCATTGTAAAGGAAACTGTACGGCGACTGGTAATATACCACTGACGTCAATCATTCCAAGGTGAGTCGGGTACTTCTTTTTCATCAATGATCTTCTTCAAAGAGCTTCGTGATAAGAATATATAAAAAGGGCTGTATTTTAGGTCCGCGTTTTTCTTTTTTTTTCATTTATGAAGATCCCAAATGATTTCAGAACGCACTCCATGACGCCAGAATTGTGTTCAACGTGCTCACAGCTTCGTGTCGTGTCAATTGTGGATCAGACGCCGTTGGGTGTTGCAGTGAGGTCGCAGTCAAGCGAGCTGATAGCATTGCTCATCGCTTACGGAGGAGATGTCAATTTAGGTACGCGGAGGAGAGAGGTCTTGCAGAATTTCGGGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAAAATGTGCAATTTAGGAAAGCACGCAAATTTGAAAAAAATAAAACGTAGAACAAAATTTTGTAATAAAAATAAAACGATTACAATTCATTGGGAAAATATATCAAAAATGCCAAAAATAAATTTATCAAACGAAAACCTCGAAAAAGTGCCAAAAATGAGGAAAAAAGTGTTATGTAATTCAAAATTCGATTGAGAAACACTGCATAATCTCTTATTTAGCCGTATACTTTGACTGTCAAAATTGAAATCTGAACAAACGTTCCAGAAAATTTTCAATGATTGGCATTAAGCCAAGAGTTGTGTTGTTGGGAGCTGCTCATATCGTTTCGTTGAATTTGTATTAGATGCTCAGAAGTGTTTTATGAAACTTTCTGACAAATTGAAAAATTCTGGACCGTTTTTTCAAGACCGTTTTGCAATTTTGACTACTTCCCAATCAGGAATTCAAAAAATGATTTATTCTATGTATCTGCTTCAAAATTCTATTTCAAACACTGTTATTCAGCTATTATTATTAATATCCCCCAGAAAACTCTGTATGATAGAT</canonical>
            <polymorphic>TTCTCAAAAATGGCTATGATCCAAATACACCAGCATCGTGTCATTGTAAAGGAAACTGTACGGCGACTGGTAATATACCACTGACGTCAATCATTCCAAGGTGAGTCGGGTACTTCTTTTTCATCAATGATCTTCTTCAAAGAGCTTCGTGATAAGAATATATAAAAAGGGCTGTATTTTAGGTCCGCGTTTTTCTTTTTTTTTCATTTATGAAGATCCCAAATGATTTCAGAACGCACTCCATGACGCCAGAATTGTGTTCAACGTGCTCACAGCTTCGTGTCGTGTCAATTGTGGATCAGACGCCGTTGGGTGTTGCAGTGAGGTCGCAGTCAAGCGAGCTGATAGCATTGCTCATCGCTTACGGAGGAGATGTCAATTTAGGTACGCGGAGGAGAGAGGTCTTGCAGAATTTCGGGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAAAATGTGCAATTTAGGAAAGCACGCAAATTTGAAAAAAATAAAACGTRGAACAAAATTTTGTAATAAAAATAAAACGATTACAATTCATTGGGAAAATATATCAAAAATGCCAAAAATAAATTTATCAAACGAAAACCTCGAAAAAGTGCCAAAAATGAGGAAAAAAGTGTTATGTAATTCAAAATTCGATTGAGAAACACTGCATAATCTCTTATTTAGCCGTATACTTTGACTGTCAAAATTGAAATCTGAACAAACGTTCCAGAAAATTTTCAATGATTGGCATTAAGCCAAGAGTTGTGTTGTTGGGAGCTGCTCATATCGTTTCGTTGAATTTGTATTAGATGCTCAGAAGTGTTTTATGAAACTTTCTGACAAATTGAAAAATTCTGGACCGTTTTTTCAAGACCGTTTTGCAATTTTGACTACTTCCCAATCAGGAATTCAAAAAATGATTTATTCTATGTATCTGCTTCAAAATTCTATTTCAAACACTGTTATTCAGCTATTATTATTAATATCCCCCAGAAAACTCTGTATGATAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAAGATCTTGGGAGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>GAGATTATGCAGTGTTTCTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAAAATGTGCAATTTAGGAAAGCACGCAAATTTGAAAAAAATAAAACGTAGAACAAAATTTTGTAATAAAAATAAAACGATTACAATTCATTGGGAAAATATATCAAAAATGCCAAAAATAAATTTATCAAACGAAAACCTCGAAAAAGTGCCAAAAATGAGGAAAAAAGTGTTATGTAATTCAAAATTCGATTGAGAAACACTGCATAATCTC</canonical_amplicon>
		<polymorphic_amplicon>GAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAAAATGTGCAATTTAGGAAAGCACGCAAATTTGAAAAAAATAAAACGTRGAACAAAATTTTGTAATAAAAATAAAACGATTACAATTCATTGGGAAAATATATCAAAAATGCCAAAAATAAATTTATCAAACGAAAACCTCGAAAAAGTGCCAAAAATGAGGAAAAAAGTGTTATGTAATTCAAAATTCGATTGAGAAACACTGCATAATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12333</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>560906</contig_pos>
        <strand></strand>
        <context>GTGCAATTTA[G/A]GAAAGCACGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAAAATGTGCAATTTA</left_flank>
        <right_flank>GAAAGCACGCAAATTTGAAAAAAATAAAACGTAGAACAAAATTTTGTAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCTCACAAACAACGAGACATTGTTGAACTTCTTCTCAAAAATGGCTATGATCCAAATACACCAGCATCGTGTCATTGTAAAGGAAACTGTACGGCGACTGGTAATATACCACTGACGTCAATCATTCCAAGGTGAGTCGGGTACTTCTTTTTCATCAATGATCTTCTTCAAAGAGCTTCGTGATAAGAATATATAAAAAGGGCTGTATTTTAGGTCCGCGTTTTTCTTTTTTTTTCATTTATGAAGATCCCAAATGATTTCAGAACGCACTCCATGACGCCAGAATTGTGTTCAACGTGCTCACAGCTTCGTGTCGTGTCAATTGTGGATCAGACGCCGTTGGGTGTTGCAGTGAGGTCGCAGTCAAGCGAGCTGATAGCATTGCTCATCGCTTACGGAGGAGATGTCAATTTAGGTACGCGGAGGAGAGAGGTCTTGCAGAATTTCGGGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAAAATGTGCAATTTAGGAAAGCACGCAAATTTGAAAAAAATAAAACGTAGAACAAAATTTTGTAATAAAAATAAAACGATTACAATTCATTGGGAAAATATATCAAAAATGCCAAAAATAAATTTATCAAACGAAAACCTCGAAAAAGTGCCAAAAATGAGGAAAAAAGTGTTATGTAATTCAAAATTCGATTGAGAAACACTGCATAATCTCTTATTTAGCCGTATACTTTGACTGTCAAAATTGAAATCTGAACAAACGTTCCAGAAAATTTTCAATGATTGGCATTAAGCCAAGAGTTGTGTTGTTGGGAGCTGCTCATATCGTTTCGTTGAATTTGTATTAGATGCTCAGAAGTGTTTTATGAAACTTTCTGACAAATTGAAAAATTCTGGACCGTTTTTTCAAGACCGTTTTGCAATTTTGACTACTTCCCAATCAGGAATTCAAAAAATGATTTATTCTATGTATCTGCTTCAAAATTCTATTTCAAACACTGTTATTCAGCTATTATTA</canonical>
            <polymorphic>TTGCTCACAAACAACGAGACATTGTTGAACTTCTTCTCAAAAATGGCTATGATCCAAATACACCAGCATCGTGTCATTGTAAAGGAAACTGTACGGCGACTGGTAATATACCACTGACGTCAATCATTCCAAGGTGAGTCGGGTACTTCTTTTTCATCAATGATCTTCTTCAAAGAGCTTCGTGATAAGAATATATAAAAAGGGCTGTATTTTAGGTCCGCGTTTTTCTTTTTTTTTCATTTATGAAGATCCCAAATGATTTCAGAACGCACTCCATGACGCCAGAATTGTGTTCAACGTGCTCACAGCTTCGTGTCGTGTCAATTGTGGATCAGACGCCGTTGGGTGTTGCAGTGAGGTCGCAGTCAAGCGAGCTGATAGCATTGCTCATCGCTTACGGAGGAGATGTCAATTTAGGTACGCGGAGGAGAGAGGTCTTGCAGAATTTCGGGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAAAATGTGCAATTTARGAAAGCACGCAAATTTGAAAAAAATAAAACGTAGAACAAAATTTTGTAATAAAAATAAAACGATTACAATTCATTGGGAAAATATATCAAAAATGCCAAAAATAAATTTATCAAACGAAAACCTCGAAAAAGTGCCAAAAATGAGGAAAAAAGTGTTATGTAATTCAAAATTCGATTGAGAAACACTGCATAATCTCTTATTTAGCCGTATACTTTGACTGTCAAAATTGAAATCTGAACAAACGTTCCAGAAAATTTTCAATGATTGGCATTAAGCCAAGAGTTGTGTTGTTGGGAGCTGCTCATATCGTTTCGTTGAATTTGTATTAGATGCTCAGAAGTGTTTTATGAAACTTTCTGACAAATTGAAAAATTCTGGACCGTTTTTTCAAGACCGTTTTGCAATTTTGACTACTTCCCAATCAGGAATTCAAAAAATGATTTATTCTATGTATCTGCTTCAAAATTCTATTTCAAACACTGTTATTCAGCTATTATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGAAAGATCTTGGGAGAA</pcr_primer_p1>
		<pcr_primer_p2>GAGATTATGCAGTGTTTCTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAAAATGTGCAATTTAGGAAAGCACGCAAATTTGAAAAAAATAAAACGTAGAACAAAATTTTGTAATAAAAATAAAACGATTACAATTCATTGGGAAAATATATCAAAAATGCCAAAAATAAATTTATCAAACGAAAACCTCGAAAAAGTGCCAAAAATGAGGAAAAAAGTGTTATGTAATTCAAAATTCGATTGAGAAACACTGCATAATCTC</canonical_amplicon>
		<polymorphic_amplicon>GGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAAAATGTGCAATTTARGAAAGCACGCAAATTTGAAAAAAATAAAACGTAGAACAAAATTTTGTAATAAAAATAAAACGATTACAATTCATTGGGAAAATATATCAAAAATGCCAAAAATAAATTTATCAAACGAAAACCTCGAAAAAGTGCCAAAAATGAGGAAAAAAGTGTTATGTAATTCAAAATTCGATTGAGAAACACTGCATAATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12334</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>560843</contig_pos>
        <strand></strand>
        <context>GRAGAGAGGT[C/T]TTGCAGAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCATCGCTTACGGAGGAGATGTCAATTTAGGTACGCGGAGGAGAGAGGT</left_flank>
        <right_flank>TTGCAGAATTTCGGGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTAGTTCCTTGTTTTCCTACAGATCCACATGTGCAATGATGAATACTTTGCACATGGCTGTTGCTCACAAACAACGAGACATTGTTGAACTTCTTCTCAAAAATGGCTATGATCCAAATACACCAGCATCGTGTCATTGTAAAGGAAACTGTACGGCGACTGGTAATATACCACTGACGTCAATCATTCCAAGGTGAGTCGGGTACTTCTTTTTCATCAATGATCTTCTTCAAAGAGCTTCGTGATAAGAATATATAAAAAGGGCTGTATTTTAGGTCCGCGTTTTTCTTTTTTTTTCATTTATGAAGATCCCAAATGATTTCAGAACGCACTCCATGACGCCAGAATTGTGTTCAACGTGCTCACAGCTTCGTGTCGTGTCAATTGTGGATCAGACGCCGTTGGGTGTTGCAGTGAGGTCGCAGTCAAGCGAGCTGATAGCATTGCTCATCGCTTACGGAGGAGATGTCAATTTAGGTACGCGGAGGAGAGAGGTCTTGCAGAATTTCGGGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAAAATGTGCAATTTAGGAAAGCACGCAAATTTGAAAAAAATAAAACGTAGAACAAAATTTTGTAATAAAAATAAAACGATTACAATTCATTGGGAAAATATATCAAAAATGCCAAAAATAAATTTATCAAACGAAAACCTCGAAAAAGTGCCAAAAATGAGGAAAAAAGTGTTATGTAATTCAAAATTCGATTGAGAAACACTGCATAATCTCTTATTTAGCCGTATACTTTGACTGTCAAAATTGAAATCTGAACAAACGTTCCAGAAAATTTTCAATGATTGGCATTAAGCCAAGAGTTGTGTTGTTGGGAGCTGCTCATATCGTTTCGTTGAATTTGTATTAGATGCTCAGAAGTGTTTTATGAAACTTTCTGACAAATTGAAAAATTCTGGACCGTTTTTTCAAGACCGTTTTGCAATTTTGACTACTTCCCAATCAGGAATTCAAAAA</canonical>
            <polymorphic>TTTCTAGTTCCTTGTTTTCCTACAGATCCACATGTGCAATGATGAATACTTTGCACATGGCTGTTGCTCACAAACAACGAGACATTGTTGAACTTCTTCTCAAAAATGGCTATGATCCAAATACACCAGCATCGTGTCATTGTAAAGGAAACTGTACGGCGACTGGTAATATACCACTGACGTCAATCATTCCAAGGTGAGTCGGGTACTTCTTTTTCATCAATGATCTTCTTCAAAGAGCTTCGTGATAAGAATATATAAAAAGGGCTGTATTTTAGGTCCGCGTTTTTCTTTTTTTTTCATTTATGAAGATCCCAAATGATTTCAGAACGCACTCCATGACGCCAGAATTGTGTTCAACGTGCTCACAGCTTCGTGTCGTGTCAATTGTGGATCAGACGCCGTTGGGTGTTGCAGTGAGGTCGCAGTCAAGCGAGCTGATAGCATTGCTCATCGCTTACGGAGGAGATGTCAATTTAGGTACGCGGAGGAGAGAGGTYTTGCAGAATTTCGGGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAAAATGTGCAATTTAGGAAAGCACGCAAATTTGAAAAAAATAAAACGTAGAACAAAATTTTGTAATAAAAATAAAACGATTACAATTCATTGGGAAAATATATCAAAAATGCCAAAAATAAATTTATCAAACGAAAACCTCGAAAAAGTGCCAAAAATGAGGAAAAAAGTGTTATGTAATTCAAAATTCGATTGAGAAACACTGCATAATCTCTTATTTAGCCGTATACTTTGACTGTCAAAATTGAAATCTGAACAAACGTTCCAGAAAATTTTCAATGATTGGCATTAAGCCAAGAGTTGTGTTGTTGGGAGCTGCTCATATCGTTTCGTTGAATTTGTATTAGATGCTCAGAAGTGTTTTATGAAACTTTCTGACAAATTGAAAAATTCTGGACCGTTTTTTCAAGACCGTTTTGCAATTTTGACTACTTCCCAATCAGGAATTCAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTATGAAGATCCCAAATGAT</pcr_primer_p1>
		<pcr_primer_p2>CACATTTTTAGAATATGCCAACT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ATTTATGAAGATCCCAAATGATTTCAGAACGCACTCCATGACGCCAGAATTGTGTTCAACGTGCTCACAGCTTCGTGTCGTGTCAATTGTGGATCAGACGCCGTTGGGTGTTGCAGTGAGGTCGCAGTCAAGCGAGCTGATAGCATTGCTCATCGCTTACGGAGGAGATGTCAATTTAGGTACGCGGAGGAGAGAGGTCTTGCAGAATTTCGGGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAAAATGTG</canonical_amplicon>
		<polymorphic_amplicon>ATTTATGAAGATCCCAAATGATTTCAGAACGCACTCCATGACGCCAGAATTGTGTTCAACGTGCTCACAGCTTCGTGTCGTGTCAATTGTGGATCAGACGCCGTTGGGTGTTGCAGTGAGGTCGCAGTCAAGCGAGCTGATAGCATTGCTCATCGCTTACGGAGGAGATGTCAATTTAGGTACGCGGAGGAGAGAGGTYTTGCAGAATTTCGGGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAAAATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12335</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>560834</contig_pos>
        <strand></strand>
        <context>GTACGCGGAG[G/A]AGAGAGGTYT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATAGCATTGCTCATCGCTTACGGAGGAGATGTCAATTTAGGTACGCGGAG</left_flank>
        <right_flank>AGAGAGGTCTTGCAGAATTTCGGGAGAAAGATCTTGGGAGAAGTTGGCAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCTCAATTTCTAGTTCCTTGTTTTCCTACAGATCCACATGTGCAATGATGAATACTTTGCACATGGCTGTTGCTCACAAACAACGAGACATTGTTGAACTTCTTCTCAAAAATGGCTATGATCCAAATACACCAGCATCGTGTCATTGTAAAGGAAACTGTACGGCGACTGGTAATATACCACTGACGTCAATCATTCCAAGGTGAGTCGGGTACTTCTTTTTCATCAATGATCTTCTTCAAAGAGCTTCGTGATAAGAATATATAAAAAGGGCTGTATTTTAGGTCCGCGTTTTTCTTTTTTTTTCATTTATGAAGATCCCAAATGATTTCAGAACGCACTCCATGACGCCAGAATTGTGTTCAACGTGCTCACAGCTTCGTGTCGTGTCAATTGTGGATCAGACGCCGTTGGGTGTTGCAGTGAGGTCGCAGTCAAGCGAGCTGATAGCATTGCTCATCGCTTACGGAGGAGATGTCAATTTAGGTACGCGGAGGAGAGAGGTCTTGCAGAATTTCGGGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAAAATGTGCAATTTAGGAAAGCACGCAAATTTGAAAAAAATAAAACGTAGAACAAAATTTTGTAATAAAAATAAAACGATTACAATTCATTGGGAAAATATATCAAAAATGCCAAAAATAAATTTATCAAACGAAAACCTCGAAAAAGTGCCAAAAATGAGGAAAAAAGTGTTATGTAATTCAAAATTCGATTGAGAAACACTGCATAATCTCTTATTTAGCCGTATACTTTGACTGTCAAAATTGAAATCTGAACAAACGTTCCAGAAAATTTTCAATGATTGGCATTAAGCCAAGAGTTGTGTTGTTGGGAGCTGCTCATATCGTTTCGTTGAATTTGTATTAGATGCTCAGAAGTGTTTTATGAAACTTTCTGACAAATTGAAAAATTCTGGACCGTTTTTTCAAGACCGTTTTGCAATTTTGACTACTTCCCAATCAGGA</canonical>
            <polymorphic>TTTCCTCAATTTCTAGTTCCTTGTTTTCCTACAGATCCACATGTGCAATGATGAATACTTTGCACATGGCTGTTGCTCACAAACAACGAGACATTGTTGAACTTCTTCTCAAAAATGGCTATGATCCAAATACACCAGCATCGTGTCATTGTAAAGGAAACTGTACGGCGACTGGTAATATACCACTGACGTCAATCATTCCAAGGTGAGTCGGGTACTTCTTTTTCATCAATGATCTTCTTCAAAGAGCTTCGTGATAAGAATATATAAAAAGGGCTGTATTTTAGGTCCGCGTTTTTCTTTTTTTTTCATTTATGAAGATCCCAAATGATTTCAGAACGCACTCCATGACGCCAGAATTGTGTTCAACGTGCTCACAGCTTCGTGTCGTGTCAATTGTGGATCAGACGCCGTTGGGTGTTGCAGTGAGGTCGCAGTCAAGCGAGCTGATAGCATTGCTCATCGCTTACGGAGGAGATGTCAATTTAGGTACGCGGAGRAGAGAGGTCTTGCAGAATTTCGGGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAAAATGTGCAATTTAGGAAAGCACGCAAATTTGAAAAAAATAAAACGTAGAACAAAATTTTGTAATAAAAATAAAACGATTACAATTCATTGGGAAAATATATCAAAAATGCCAAAAATAAATTTATCAAACGAAAACCTCGAAAAAGTGCCAAAAATGAGGAAAAAAGTGTTATGTAATTCAAAATTCGATTGAGAAACACTGCATAATCTCTTATTTAGCCGTATACTTTGACTGTCAAAATTGAAATCTGAACAAACGTTCCAGAAAATTTTCAATGATTGGCATTAAGCCAAGAGTTGTGTTGTTGGGAGCTGCTCATATCGTTTCGTTGAATTTGTATTAGATGCTCAGAAGTGTTTTATGAAACTTTCTGACAAATTGAAAAATTCTGGACCGTTTTTTCAAGACCGTTTTGCAATTTTGACTACTTCCCAATCAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTATGAAGATCCCAAATGAT</pcr_primer_p1>
		<pcr_primer_p2>TTTAGAATATGCCAACTTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTTATGAAGATCCCAAATGATTTCAGAACGCACTCCATGACGCCAGAATTGTGTTCAACGTGCTCACAGCTTCGTGTCGTGTCAATTGTGGATCAGACGCCGTTGGGTGTTGCAGTGAGGTCGCAGTCAAGCGAGCTGATAGCATTGCTCATCGCTTACGGAGGAGATGTCAATTTAGGTACGCGGAGGAGAGAGGTCTTGCAGAATTTCGGGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTATGAAGATCCCAAATGATTTCAGAACGCACTCCATGACGCCAGAATTGTGTTCAACGTGCTCACAGCTTCGTGTCGTGTCAATTGTGGATCAGACGCCGTTGGGTGTTGCAGTGAGGTCGCAGTCAAGCGAGCTGATAGCATTGCTCATCGCTTACGGAGGAGATGTCAATTTAGGTACGCGGAGRAGAGAGGTCTTGCAGAATTTCGGGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12336</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>560801</contig_pos>
        <strand></strand>
        <context>TGCTCATCGC[T/C]TACGGAGGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGTGTTGCAGTGAGGTCGCAGTCAAGCGAGCTGATAGCATTGCTCATCGC</left_flank>
        <right_flank>TACGGAGGAGATGTCAATTTAGGTACGCGGAGGAGAGAGGTCTTGCAGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTTTGAAACATTTTCTCCGTCTGTCAGTTTTTTCCTCAATTTCTAGTTCCTTGTTTTCCTACAGATCCACATGTGCAATGATGAATACTTTGCACATGGCTGTTGCTCACAAACAACGAGACATTGTTGAACTTCTTCTCAAAAATGGCTATGATCCAAATACACCAGCATCGTGTCATTGTAAAGGAAACTGTACGGCGACTGGTAATATACCACTGACGTCAATCATTCCAAGGTGAGTCGGGTACTTCTTTTTCATCAATGATCTTCTTCAAAGAGCTTCGTGATAAGAATATATAAAAAGGGCTGTATTTTAGGTCCGCGTTTTTCTTTTTTTTTCATTTATGAAGATCCCAAATGATTTCAGAACGCACTCCATGACGCCAGAATTGTGTTCAACGTGCTCACAGCTTCGTGTCGTGTCAATTGTGGATCAGACGCCGTTGGGTGTTGCAGTGAGGTCGCAGTCAAGCGAGCTGATAGCATTGCTCATCGCTTACGGAGGAGATGTCAATTTAGGTACGCGGAGGAGAGAGGTCTTGCAGAATTTCGGGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAAAATGTGCAATTTAGGAAAGCACGCAAATTTGAAAAAAATAAAACGTAGAACAAAATTTTGTAATAAAAATAAAACGATTACAATTCATTGGGAAAATATATCAAAAATGCCAAAAATAAATTTATCAAACGAAAACCTCGAAAAAGTGCCAAAAATGAGGAAAAAAGTGTTATGTAATTCAAAATTCGATTGAGAAACACTGCATAATCTCTTATTTAGCCGTATACTTTGACTGTCAAAATTGAAATCTGAACAAACGTTCCAGAAAATTTTCAATGATTGGCATTAAGCCAAGAGTTGTGTTGTTGGGAGCTGCTCATATCGTTTCGTTGAATTTGTATTAGATGCTCAGAAGTGTTTTATGAAACTTTCTGACAAATTGAAAAATTCTGGACCGTTTTTTCAAGAC</canonical>
            <polymorphic>CATTTTTGAAACATTTTCTCCGTCTGTCAGTTTTTTCCTCAATTTCTAGTTCCTTGTTTTCCTACAGATCCACATGTGCAATGATGAATACTTTGCACATGGCTGTTGCTCACAAACAACGAGACATTGTTGAACTTCTTCTCAAAAATGGCTATGATCCAAATACACCAGCATCGTGTCATTGTAAAGGAAACTGTACGGCGACTGGTAATATACCACTGACGTCAATCATTCCAAGGTGAGTCGGGTACTTCTTTTTCATCAATGATCTTCTTCAAAGAGCTTCGTGATAAGAATATATAAAAAGGGCTGTATTTTAGGTCCGCGTTTTTCTTTTTTTTTCATTTATGAAGATCCCAAATGATTTCAGAACGCACTCCATGACGCCAGAATTGTGTTCAACGTGCTCACAGCTTCGTGTCGTGTCAATTGTGGATCAGACGCCGTTGGGTGTTGCAGTGAGGTCGCAGTCAAGCGAGCTGATAGCATTGCTCATCGCYTACGGAGGAGATGTCAATTTAGGTACGCGGAGGAGAGAGGTCTTGCAGAATTTCGGGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAAAATGTGCAATTTAGGAAAGCACGCAAATTTGAAAAAAATAAAACGTAGAACAAAATTTTGTAATAAAAATAAAACGATTACAATTCATTGGGAAAATATATCAAAAATGCCAAAAATAAATTTATCAAACGAAAACCTCGAAAAAGTGCCAAAAATGAGGAAAAAAGTGTTATGTAATTCAAAATTCGATTGAGAAACACTGCATAATCTCTTATTTAGCCGTATACTTTGACTGTCAAAATTGAAATCTGAACAAACGTTCCAGAAAATTTTCAATGATTGGCATTAAGCCAAGAGTTGTGTTGTTGGGAGCTGCTCATATCGTTTCGTTGAATTTGTATTAGATGCTCAGAAGTGTTTTATGAAACTTTCTGACAAATTGAAAAATTCTGGACCGTTTTTTCAAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTATGAAGATCCCAAATGAT</pcr_primer_p1>
		<pcr_primer_p2>TTTAGAATATGCCAACTTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTTATGAAGATCCCAAATGATTTCAGAACGCACTCCATGACGCCAGAATTGTGTTCAACGTGCTCACAGCTTCGTGTCGTGTCAATTGTGGATCAGACGCCGTTGGGTGTTGCAGTGAGGTCGCAGTCAAGCGAGCTGATAGCATTGCTCATCGCTTACGGAGGAGATGTCAATTTAGGTACGCGGAGGAGAGAGGTCTTGCAGAATTTCGGGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTATGAAGATCCCAAATGATTTCAGAACGCACTCCATGACGCCAGAATTGTGTTCAACGTGCTCACAGCTTCGTGTCGTGTCAATTGTGGATCAGACGCCGTTGGGTGTTGCAGTGAGGTCGCAGTCAAGCGAGCTGATAGCATTGCTCATCGCYTACGGAGGAGATGTCAATTTAGGTACGCGGAGGAGAGAGGTCTTGCAGAATTTCGGGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12337</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>560750</contig_pos>
        <strand></strand>
        <context>AGACGCCGTT[G/A]GGTGTTGCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCAACGTGCTCACAGCTTCGTGTCGTGTCAATTGTGGATCAGACGCCGTT</left_flank>
        <right_flank>GGTGTTGCAGTGAGGTCGCAGTCAAGCGAGCTGATAGCATTGCTCATCGC</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATCTTTAAAAATGTTATATTCTTAAAAAATATAAATTTTTCAAATATCATTTTTGAAACATTTTCTCCGTCTGTCAGTTTTTTCCTCAATTTCTAGTTCCTTGTTTTCCTACAGATCCACATGTGCAATGATGAATACTTTGCACATGGCTGTTGCTCACAAACAACGAGACATTGTTGAACTTCTTCTCAAAAATGGCTATGATCCAAATACACCAGCATCGTGTCATTGTAAAGGAAACTGTACGGCGACTGGTAATATACCACTGACGTCAATCATTCCAAGGTGAGTCGGGTACTTCTTTTTCATCAATGATCTTCTTCAAAGAGCTTCGTGATAAGAATATATAAAAAGGGCTGTATTTTAGGTCCGCGTTTTTCTTTTTTTTTCATTTATGAAGATCCCAAATGATTTCAGAACGCACTCCATGACGCCAGAATTGTGTTCAACGTGCTCACAGCTTCGTGTCGTGTCAATTGTGGATCAGACGCCGTTGGGTGTTGCAGTGAGGTCGCAGTCAAGCGAGCTGATAGCATTGCTCATCGCTTACGGAGGAGATGTCAATTTAGGTACGCGGAGGAGAGAGGTCTTGCAGAATTTCGGGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAAAATGTGCAATTTAGGAAAGCACGCAAATTTGAAAAAAATAAAACGTAGAACAAAATTTTGTAATAAAAATAAAACGATTACAATTCATTGGGAAAATATATCAAAAATGCCAAAAATAAATTTATCAAACGAAAACCTCGAAAAAGTGCCAAAAATGAGGAAAAAAGTGTTATGTAATTCAAAATTCGATTGAGAAACACTGCATAATCTCTTATTTAGCCGTATACTTTGACTGTCAAAATTGAAATCTGAACAAACGTTCCAGAAAATTTTCAATGATTGGCATTAAGCCAAGAGTTGTGTTGTTGGGAGCTGCTCATATCGTTTCGTTGAATTTGTATTAGATGCTCAGAAGTGT</canonical>
            <polymorphic>AAAAATCTTTAAAAATGTTATATTCTTAAAAAATATAAATTTTTCAAATATCATTTTTGAAACATTTTCTCCGTCTGTCAGTTTTTTCCTCAATTTCTAGTTCCTTGTTTTCCTACAGATCCACATGTGCAATGATGAATACTTTGCACATGGCTGTTGCTCACAAACAACGAGACATTGTTGAACTTCTTCTCAAAAATGGCTATGATCCAAATACACCAGCATCGTGTCATTGTAAAGGAAACTGTACGGCGACTGGTAATATACCACTGACGTCAATCATTCCAAGGTGAGTCGGGTACTTCTTTTTCATCAATGATCTTCTTCAAAGAGCTTCGTGATAAGAATATATAAAAAGGGCTGTATTTTAGGTCCGCGTTTTTCTTTTTTTTTCATTTATGAAGATCCCAAATGATTTCAGAACGCACTCCATGACGCCAGAATTGTGTTCAACGTGCTCACAGCTTCGTGTCGTGTCAATTGTGGATCAGACGCCGTTRGGTGTTGCAGTGAGGTCGCAGTCAAGCGAGCTGATAGCATTGCTCATCGCTTACGGAGGAGATGTCAATTTAGGTACGCGGAGGAGAGAGGTCTTGCAGAATTTCGGGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAAAATGTGCAATTTAGGAAAGCACGCAAATTTGAAAAAAATAAAACGTAGAACAAAATTTTGTAATAAAAATAAAACGATTACAATTCATTGGGAAAATATATCAAAAATGCCAAAAATAAATTTATCAAACGAAAACCTCGAAAAAGTGCCAAAAATGAGGAAAAAAGTGTTATGTAATTCAAAATTCGATTGAGAAACACTGCATAATCTCTTATTTAGCCGTATACTTTGACTGTCAAAATTGAAATCTGAACAAACGTTCCAGAAAATTTTCAATGATTGGCATTAAGCCAAGAGTTGTGTTGTTGGGAGCTGCTCATATCGTTTCGTTGAATTTGTATTAGATGCTCAGAAGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTATGAAGATCCCAAATGAT</pcr_primer_p1>
		<pcr_primer_p2>TTTAGAATATGCCAACTTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTTATGAAGATCCCAAATGATTTCAGAACGCACTCCATGACGCCAGAATTGTGTTCAACGTGCTCACAGCTTCGTGTCGTGTCAATTGTGGATCAGACGCCGTTGGGTGTTGCAGTGAGGTCGCAGTCAAGCGAGCTGATAGCATTGCTCATCGCTTACGGAGGAGATGTCAATTTAGGTACGCGGAGGAGAGAGGTCTTGCAGAATTTCGGGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTATGAAGATCCCAAATGATTTCAGAACGCACTCCATGACGCCAGAATTGTGTTCAACGTGCTCACAGCTTCGTGTCGTGTCAATTGTGGATCAGACGCCGTTRGGTGTTGCAGTGAGGTCGCAGTCAAGCGAGCTGATAGCATTGCTCATCGCTTACGGAGGAGATGTCAATTTAGGTACGCGGAGGAGAGAGGTCTTGCAGAATTTCGGGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12338</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>560714</contig_pos>
        <strand></strand>
        <context>CGTGCTCACA[G/A]CTTCGTGTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GATTTCAGAACGCACTCCATGACGCCAGAATTGTGTTCAACGTGCTCACA</left_flank>
        <right_flank>CTTCGTGTCGTGTCAATTGTGGATCAGACGCCGTTGGGTGTTGCAGTGAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATTTAATCGGCACTATATCGTTTTTAAGAATTTTAAAAATCTTTAAAAATGTTATATTCTTAAAAAATATAAATTTTTCAAATATCATTTTTGAAACATTTTCTCCGTCTGTCAGTTTTTTCCTCAATTTCTAGTTCCTTGTTTTCCTACAGATCCACATGTGCAATGATGAATACTTTGCACATGGCTGTTGCTCACAAACAACGAGACATTGTTGAACTTCTTCTCAAAAATGGCTATGATCCAAATACACCAGCATCGTGTCATTGTAAAGGAAACTGTACGGCGACTGGTAATATACCACTGACGTCAATCATTCCAAGGTGAGTCGGGTACTTCTTTTTCATCAATGATCTTCTTCAAAGAGCTTCGTGATAAGAATATATAAAAAGGGCTGTATTTTAGGTCCGCGTTTTTCTTTTTTTTTCATTTATGAAGATCCCAAATGATTTCAGAACGCACTCCATGACGCCAGAATTGTGTTCAACGTGCTCACAGCTTCGTGTCGTGTCAATTGTGGATCAGACGCCGTTGGGTGTTGCAGTGAGGTCGCAGTCAAGCGAGCTGATAGCATTGCTCATCGCTTACGGAGGAGATGTCAATTTAGGTACGCGGAGGAGAGAGGTCTTGCAGAATTTCGGGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAAAATGTGCAATTTAGGAAAGCACGCAAATTTGAAAAAAATAAAACGTAGAACAAAATTTTGTAATAAAAATAAAACGATTACAATTCATTGGGAAAATATATCAAAAATGCCAAAAATAAATTTATCAAACGAAAACCTCGAAAAAGTGCCAAAAATGAGGAAAAAAGTGTTATGTAATTCAAAATTCGATTGAGAAACACTGCATAATCTCTTATTTAGCCGTATACTTTGACTGTCAAAATTGAAATCTGAACAAACGTTCCAGAAAATTTTCAATGATTGGCATTAAGCCAAGAGTTGTGTTGTTGGGAGCTGCTCATAT</canonical>
            <polymorphic>TCATTTAATCGGCACTATATCGTTTTTAAGAATTTTAAAAATCTTTAAAAATGTTATATTCTTAAAAAATATAAATTTTTCAAATATCATTTTTGAAACATTTTCTCCGTCTGTCAGTTTTTTCCTCAATTTCTAGTTCCTTGTTTTCCTACAGATCCACATGTGCAATGATGAATACTTTGCACATGGCTGTTGCTCACAAACAACGAGACATTGTTGAACTTCTTCTCAAAAATGGCTATGATCCAAATACACCAGCATCGTGTCATTGTAAAGGAAACTGTACGGCGACTGGTAATATACCACTGACGTCAATCATTCCAAGGTGAGTCGGGTACTTCTTTTTCATCAATGATCTTCTTCAAAGAGCTTCGTGATAAGAATATATAAAAAGGGCTGTATTTTAGGTCCGCGTTTTTCTTTTTTTTTCATTTATGAAGATCCCAAATGATTTCAGAACGCACTCCATGACGCCAGAATTGTGTTCAACGTGCTCACARCTTCGTGTCGTGTCAATTGTGGATCAGACGCCGTTGGGTGTTGCAGTGAGGTCGCAGTCAAGCGAGCTGATAGCATTGCTCATCGCTTACGGAGGAGATGTCAATTTAGGTACGCGGAGGAGAGAGGTCTTGCAGAATTTCGGGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAAAATGTGCAATTTAGGAAAGCACGCAAATTTGAAAAAAATAAAACGTAGAACAAAATTTTGTAATAAAAATAAAACGATTACAATTCATTGGGAAAATATATCAAAAATGCCAAAAATAAATTTATCAAACGAAAACCTCGAAAAAGTGCCAAAAATGAGGAAAAAAGTGTTATGTAATTCAAAATTCGATTGAGAAACACTGCATAATCTCTTATTTAGCCGTATACTTTGACTGTCAAAATTGAAATCTGAACAAACGTTCCAGAAAATTTTCAATGATTGGCATTAAGCCAAGAGTTGTGTTGTTGGGAGCTGCTCATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>424 369 131 66 10</canonical_bands>
                <polymorphic_bands>424 369 197 10</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>331 189 131 104 71 66 49 27 22 10</canonical_bands>
                <polymorphic_bands>331 189 170 131 71 49 27 22 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTATGAAGATCCCAAATGAT</pcr_primer_p1>
		<pcr_primer_p2>TTTAGAATATGCCAACTTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTTATGAAGATCCCAAATGATTTCAGAACGCACTCCATGACGCCAGAATTGTGTTCAACGTGCTCACAGCTTCGTGTCGTGTCAATTGTGGATCAGACGCCGTTGGGTGTTGCAGTGAGGTCGCAGTCAAGCGAGCTGATAGCATTGCTCATCGCTTACGGAGGAGATGTCAATTTAGGTACGCGGAGGAGAGAGGTCTTGCAGAATTTCGGGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTATGAAGATCCCAAATGATTTCAGAACGCACTCCATGACGCCAGAATTGTGTTCAACGTGCTCACARCTTCGTGTCGTGTCAATTGTGGATCAGACGCCGTTGGGTGTTGCAGTGAGGTCGCAGTCAAGCGAGCTGATAGCATTGCTCATCGCTTACGGAGGAGATGTCAATTTAGGTACGCGGAGGAGAGAGGTCTTGCAGAATTTCGGGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12339</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>560584</contig_pos>
        <strand></strand>
        <context>CTTCAAAGAG[C/T]TTCGTGATAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCAAGGTGAGTCGGGTACTTCTTTTTCATCAATGATCTTCTTCAAAGAG</left_flank>
        <right_flank>TTCGTGATAAGAATATATAAAAAGGGCTGTATTTTAGGTCCGCGTTTTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTTGAGCGATTTGCCGATTTCTGAATGATCACTCTTTTGGGCCAGTTTTTGTACTAAAAGGTAAAAAAGAGCTTACCTGAAATTGGTCAAAATGGCCAAAAATCCACTGAAAATACGGTTTTGCATATCATTTAATCGGCACTATATCGTTTTTAAGAATTTTAAAAATCTTTAAAAATGTTATATTCTTAAAAAATATAAATTTTTCAAATATCATTTTTGAAACATTTTCTCCGTCTGTCAGTTTTTTCCTCAATTTCTAGTTCCTTGTTTTCCTACAGATCCACATGTGCAATGATGAATACTTTGCACATGGCTGTTGCTCACAAACAACGAGACATTGTTGAACTTCTTCTCAAAAATGGCTATGATCCAAATACACCAGCATCGTGTCATTGTAAAGGAAACTGTACGGCGACTGGTAATATACCACTGACGTCAATCATTCCAAGGTGAGTCGGGTACTTCTTTTTCATCAATGATCTTCTTCAAAGAGCTTCGTGATAAGAATATATAAAAAGGGCTGTATTTTAGGTCCGCGTTTTTCTTTTTTTTTCATTTATGAAGATCCCAAATGATTTCAGAACGCACTCCATGACGCCAGAATTGTGTTCAACGTGCTCACAGCTTCGTGTCGTGTCAATTGTGGATCAGACGCCGTTGGGTGTTGCAGTGAGGTCGCAGTCAAGCGAGCTGATAGCATTGCTCATCGCTTACGGAGGAGATGTCAATTTAGGTACGCGGAGGAGAGAGGTCTTGCAGAATTTCGGGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAAAATGTGCAATTTAGGAAAGCACGCAAATTTGAAAAAAATAAAACGTAGAACAAAATTTTGTAATAAAAATAAAACGATTACAATTCATTGGGAAAATATATCAAAAATGCCAAAAATAAATTTATCAAACGAAAACCTCGAAAAAGTGCCAAAAATGAGGAAAAAAGTGTTATGTAATTCAAAATTCGATTG</canonical>
            <polymorphic>GTTTTTGAGCGATTTGCCGATTTCTGAATGATCACTCTTTTGGGCCAGTTTTTGTACTAAAAGGTAAAAAAGAGCTTACCTGAAATTGGTCAAAATGGCCAAAAATCCACTGAAAATACGGTTTTGCATATCATTTAATCGGCACTATATCGTTTTTAAGAATTTTAAAAATCTTTAAAAATGTTATATTCTTAAAAAATATAAATTTTTCAAATATCATTTTTGAAACATTTTCTCCGTCTGTCAGTTTTTTCCTCAATTTCTAGTTCCTTGTTTTCCTACAGATCCACATGTGCAATGATGAATACTTTGCACATGGCTGTTGCTCACAAACAACGAGACATTGTTGAACTTCTTCTCAAAAATGGCTATGATCCAAATACACCAGCATCGTGTCATTGTAAAGGAAACTGTACGGCGACTGGTAATATACCACTGACGTCAATCATTCCAAGGTGAGTCGGGTACTTCTTTTTCATCAATGATCTTCTTCAAAGAGYTTCGTGATAAGAATATATAAAAAGGGCTGTATTTTAGGTCCGCGTTTTTCTTTTTTTTTCATTTATGAAGATCCCAAATGATTTCAGAACGCACTCCATGACGCCAGAATTGTGTTCAACGTGCTCACAGCTTCGTGTCGTGTCAATTGTGGATCAGACGCCGTTGGGTGTTGCAGTGAGGTCGCAGTCAAGCGAGCTGATAGCATTGCTCATCGCTTACGGAGGAGATGTCAATTTAGGTACGCGGAGGAGAGAGGTCTTGCAGAATTTCGGGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAAAATGTGCAATTTAGGAAAGCACGCAAATTTGAAAAAAATAAAACGTAGAACAAAATTTTGTAATAAAAATAAAACGATTACAATTCATTGGGAAAATATATCAAAAATGCCAAAAATAAATTTATCAAACGAAAACCTCGAAAAAGTGCCAAAAATGAGGAAAAAAGTGTTATGTAATTCAAAATTCGATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>425 304 131 74 66</canonical_bands>
                <polymorphic_bands>556 304 74 66</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>304 221 131 104 66 49 44 30 27 24</canonical_bands>
                <polymorphic_bands>304 221 158 104 66 49 44 30 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACATTGTTGAACTTCTTCTCA</pcr_primer_p1>
		<pcr_primer_p2>AAATCATTTGGGATCTTCATAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGACATTGTTGAACTTCTTCTCAAAAATGGCTATGATCCAAATACACCAGCATCGTGTCATTGTAAAGGAAACTGTACGGCGACTGGTAATATACCACTGACGTCAATCATTCCAAGGTGAGTCGGGTACTTCTTTTTCATCAATGATCTTCTTCAAAGAGCTTCGTGATAAGAATATATAAAAAGGGCTGTATTTTAGGTCCGCGTTTTTCTTTTTTTTTCATTTATGAAGATCCCAAATGATTT</canonical_amplicon>
		<polymorphic_amplicon>AGACATTGTTGAACTTCTTCTCAAAAATGGCTATGATCCAAATACACCAGCATCGTGTCATTGTAAAGGAAACTGTACGGCGACTGGTAATATACCACTGACGTCAATCATTCCAAGGTGAGTCGGGTACTTCTTTTTCATCAATGATCTTCTTCAAAGAGYTTCGTGATAAGAATATATAAAAAGGGCTGTATTTTAGGTCCGCGTTTTTCTTTTTTTTTCATTTATGAAGATCCCAAATGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12340</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>560564</contig_pos>
        <strand></strand>
        <context>TCTTTTTCAT[C/A]AATGATCTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATACCACTGACGTCAATCATTCCAAGGTGAGTCGGGTACTTCTTTTTCAT</left_flank>
        <right_flank>AATGATCTTCTTCAAAGAGCTTCGTGATAAGAATATATAAAAAGGGCTGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTTTTCGAAAACTCCTAGTTTTTGAGCGATTTGCCGATTTCTGAATGATCACTCTTTTGGGCCAGTTTTTGTACTAAAAGGTAAAAAAGAGCTTACCTGAAATTGGTCAAAATGGCCAAAAATCCACTGAAAATACGGTTTTGCATATCATTTAATCGGCACTATATCGTTTTTAAGAATTTTAAAAATCTTTAAAAATGTTATATTCTTAAAAAATATAAATTTTTCAAATATCATTTTTGAAACATTTTCTCCGTCTGTCAGTTTTTTCCTCAATTTCTAGTTCCTTGTTTTCCTACAGATCCACATGTGCAATGATGAATACTTTGCACATGGCTGTTGCTCACAAACAACGAGACATTGTTGAACTTCTTCTCAAAAATGGCTATGATCCAAATACACCAGCATCGTGTCATTGTAAAGGAAACTGTACGGCGACTGGTAATATACCACTGACGTCAATCATTCCAAGGTGAGTCGGGTACTTCTTTTTCATCAATGATCTTCTTCAAAGAGCTTCGTGATAAGAATATATAAAAAGGGCTGTATTTTAGGTCCGCGTTTTTCTTTTTTTTTCATTTATGAAGATCCCAAATGATTTCAGAACGCACTCCATGACGCCAGAATTGTGTTCAACGTGCTCACAGCTTCGTGTCGTGTCAATTGTGGATCAGACGCCGTTGGGTGTTGCAGTGAGGTCGCAGTCAAGCGAGCTGATAGCATTGCTCATCGCTTACGGAGGAGATGTCAATTTAGGTACGCGGAGGAGAGAGGTCTTGCAGAATTTCGGGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAAAATGTGCAATTTAGGAAAGCACGCAAATTTGAAAAAAATAAAACGTAGAACAAAATTTTGTAATAAAAATAAAACGATTACAATTCATTGGGAAAATATATCAAAAATGCCAAAAATAAATTTATCAAACGAAAACCTCGAAAAAGTGCCAAAAATGAGGAAAAAAGTGTTA</canonical>
            <polymorphic>GAATTTTTCGAAAACTCCTAGTTTTTGAGCGATTTGCCGATTTCTGAATGATCACTCTTTTGGGCCAGTTTTTGTACTAAAAGGTAAAAAAGAGCTTACCTGAAATTGGTCAAAATGGCCAAAAATCCACTGAAAATACGGTTTTGCATATCATTTAATCGGCACTATATCGTTTTTAAGAATTTTAAAAATCTTTAAAAATGTTATATTCTTAAAAAATATAAATTTTTCAAATATCATTTTTGAAACATTTTCTCCGTCTGTCAGTTTTTTCCTCAATTTCTAGTTCCTTGTTTTCCTACAGATCCACATGTGCAATGATGAATACTTTGCACATGGCTGTTGCTCACAAACAACGAGACATTGTTGAACTTCTTCTCAAAAATGGCTATGATCCAAATACACCAGCATCGTGTCATTGTAAAGGAAACTGTACGGCGACTGGTAATATACCACTGACGTCAATCATTCCAAGGTGAGTCGGGTACTTCTTTTTCATMAATGATCTTCTTCAAAGAGCTTCGTGATAAGAATATATAAAAAGGGCTGTATTTTAGGTCCGCGTTTTTCTTTTTTTTTCATTTATGAAGATCCCAAATGATTTCAGAACGCACTCCATGACGCCAGAATTGTGTTCAACGTGCTCACAGCTTCGTGTCGTGTCAATTGTGGATCAGACGCCGTTGGGTGTTGCAGTGAGGTCGCAGTCAAGCGAGCTGATAGCATTGCTCATCGCTTACGGAGGAGATGTCAATTTAGGTACGCGGAGGAGAGAGGTCTTGCAGAATTTCGGGAGAAAGATCTTGGGAGAAGTTGGCATATTCTAAAAATGTGCAATTTAGGAAAGCACGCAAATTTGAAAAAAATAAAACGTAGAACAAAATTTTGTAATAAAAATAAAACGATTACAATTCATTGGGAAAATATATCAAAAATGCCAAAAATAAATTTATCAAACGAAAACCTCGAAAAAGTGCCAAAAATGAGGAAAAAAGTGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGACATTGTTGAACTTCTTCTCA</pcr_primer_p1>
		<pcr_primer_p2>AAATCATTTGGGATCTTCATAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGACATTGTTGAACTTCTTCTCAAAAATGGCTATGATCCAAATACACCAGCATCGTGTCATTGTAAAGGAAACTGTACGGCGACTGGTAATATACCACTGACGTCAATCATTCCAAGGTGAGTCGGGTACTTCTTTTTCATCAATGATCTTCTTCAAAGAGCTTCGTGATAAGAATATATAAAAAGGGCTGTATTTTAGGTCCGCGTTTTTCTTTTTTTTTCATTTATGAAGATCCCAAATGATTT</canonical_amplicon>
		<polymorphic_amplicon>AGACATTGTTGAACTTCTTCTCAAAAATGGCTATGATCCAAATACACCAGCATCGTGTCATTGTAAAGGAAACTGTACGGCGACTGGTAATATACCACTGACGTCAATCATTCCAAGGTGAGTCGGGTACTTCTTTTTCATMAATGATCTTCTTCAAAGAGCTTCGTGATAAGAATATATAAAAAGGGCTGTATTTTAGGTCCGCGTTTTTCTTTTTTTTTCATTTATGAAGATCCCAAATGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12341</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>570070</contig_pos>
        <strand>+</strand>
        <context>ATGAATTTTT[C/T]AGAAATAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAACTGTGAATTTTGTTTTTATAGTCAAAAATTTTCAAAAATGAATTTTT</left_flank>
        <right_flank>AGAAATAAAAATGTCGTGTCCTCCATGAACGAGTGCACTGATGTCCTTCG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATTTTCAATGTGTCAGACAGCTGATTCTCAACTTGCTCAATGTGTACAACAAGAGGTAAAAACGGTCAATAACATATACAGAAACATGTTTTTCTTTTGATTCTTGGCCATTTTTGACCATTTTCAGGAGCCTCGATTTCGACTATCAAGTTCTTTATCACTTTGAAAATTGTGGAGTGTGTGAAACAAACCTAATTTGAAAAATTTACATTTGCAGAATGATTTTGAAATCTCTAGTTTTTCAGTTATTTTCCAAAGTAAAAAAGTAGTAAAAACAGGTGTCCTTCAAATGACGGCATGTTACTCAAAAACTAGGAATTTTCGAAAAATTCTAAGAATGCAGAGTTTCAATTTTGGTCTGTTTTGCACCCTCTAAAATTTTCAAAGTGAAGGAAAACTTGACTGACGAGCTCCAAACCACTGAAAATGTTCAAAAGGGCCAAAAATCAACTGTGAATTTTGTTTTTATAGTCAAAAATTTTCAAAAATGAATTTTTTAGAAATAAAAATGTCGTGTCCTCCATGAACGAGTGCACTGATGTCCTTCGCGCAATCCTAAACTCTCCTCAACATCCGACTGTCAAAAACTGGTGCGCTGAAATTATCCACGTCGTCAATACTCATGTAGAAGAAGAAGAGCCAACACGAGCAGAGAATAATGAGCAAATTAATGACGAGTATTTGGAGGTAAGTGATTTTCCAGAAGATTCTTTTTGAGAGACAACCACGCGCTTCATATGTTTTCATTTCTTTGTTTCTTTTCTTTTTTTGGTTTTATGATTCATATATTTTTTCAACCGTTGTCTTCTTTTTACTGTTCTTTTTACTGATTTCTTTTCCTACTTCTTCCATTTCTGCTTCCACCGCTCCCCGAACCCAAATGAATCGAAAATCAAAGGTTCGAATTTCAAATCGTGGAATCTCCGAGCTAGTCCGTAGAGCCACTATCGGCGCCCTATTCCCAAATGGTCCGGTTCCAAGACGAACAATGCACGATT</canonical>
            <polymorphic>AGATTTTCAATGTGTCAGACAGCTGATTCTCAACTTGCTCAATGTGTACAACAAGAGGTAAAAACGGTCAATAACATATACAGAAACATGTTTTTCTTTTGATTCTTGGCCATTTTTGACCATTTTCAGGAGCCTCGATTTCGACTATCAAGTTCTTTATCACTTTGAAAATTGTGGAGTGTGTGAAACAAACCTAATTTGAAAAATTTACATTTGCAGAATGATTTTGAAATCTCTAGTTTTTCAGTTATTTTCCAAAGTAAAAAAGTAGTAAAAACAGGTGTCCTTCAAATGACGGCATGTTACTCAAAAACTAGGAATTTTCGAAAAATTCTAAGAATGCAGAGTTTCAATTTTGGTCTGTTTTGCACCCTCTAAAATTTTCAAAGTGAAGGAAAACTTGACTGACGAGCTCCAAACCACTGAAAATGTTCAAAAGGGCCAAAAATCAACTGTGAATTTTGTTTTTATAGTCAAAAATTTTCAAAAATGAATTTTTYAGAAATAAAAATGTCGTGTCCTCCATGAACGAGTGCACTGATGTCCTTCGCGCAATCCTAAACTCTCCTCAACATCCGACTGTCAAAAACTGGTGCGCTGAAATTATCCACGTCGTCAATACTCATGTAGAAGAAGAAGAGCCAACACGAGCAGAGAATAATGAGCAAATTAATGACGAGTATTTGGAGGTAAGTGATTTTCCAGAAGATTCTTTTTGAGAGACAACCACGCGCTTCATATGTTTTCATTTCTTTGTTTCTTTTCTTTTTTTGGTTTTATGATTCATATATTTTTTCAACCGTTGTCTTCTTTTTACTGTTCTTTTTACTGATTTCTTTTCCTACTTCTTCCATTTCTGCTTCCACCGCTCCCCGAACCCAAATGAATCGAAAATCAAAGGTTCGAATTTCAAATCGTGGAATCTCCGAGCTAGTCCGTAGAGCCACTATCGGCGCCCTATTCCCAAATGGTCCGGTTCCAAGACGAACAATGCACGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATGTGTACAACAAGAGGTAAA</pcr_primer_p1>
		<pcr_primer_p2>TGTTGAGGAGAGTTTAGGATTG</pcr_primer_p2>
		<pcr_amplicon_size>535</pcr_amplicon_size>
		<canonical_amplicon>CAATGTGTACAACAAGAGGTAAAAACGGTCAATAACATATACAGAAACATGTTTTTCTTTTGATTCTTGGCCATTTTTGACCATTTTCAGGAGCCTCGATTTCGACTATCAAGTTCTTTATCACTTTGAAAATTGTGGAGTGTGTGAAACAAACCTAATTTGAAAAATTTACATTTGCAGAATGATTTTGAAATCTCTAGTTTTTCAGTTATTTTCCAAAGTAAAAAAGTAGTAAAAACAGGTGTCCTTCAAATGACGGCATGTTACTCAAAAACTAGGAATTTTCGAAAAATTCTAAGAATGCAGAGTTTCAATTTTGGTCTGTTTTGCACCCTCTAAAATTTTCAAAGTGAAGGAAAACTTGACTGACGAGCTCCAAACCACTGAAAATGTTCAAAAGGGCCAAAAATCAACTGTGAATTTTGTTTTTATAGTCAAAAATTTTCAAAAATGAATTTTTTAGAAATAAAAATGTCGTGTCCTCCATGAACGAGTGCACTGATGTCCTTCGCGCAATCCTAAACTCTCCTCAACA</canonical_amplicon>
		<polymorphic_amplicon>CAATGTGTACAACAAGAGGTAAAAACGGTCAATAACATATACAGAAACATGTTTTTCTTTTGATTCTTGGCCATTTTTGACCATTTTCAGGAGCCTCGATTTCGACTATCAAGTTCTTTATCACTTTGAAAATTGTGGAGTGTGTGAAACAAACCTAATTTGAAAAATTTACATTTGCAGAATGATTTTGAAATCTCTAGTTTTTCAGTTATTTTCCAAAGTAAAAAAGTAGTAAAAACAGGTGTCCTTCAAATGACGGCATGTTACTCAAAAACTAGGAATTTTCGAAAAATTCTAAGAATGCAGAGTTTCAATTTTGGTCTGTTTTGCACCCTCTAAAATTTTCAAAGTGAAGGAAAACTTGACTGACGAGCTCCAAACCACTGAAAATGTTCAAAAGGGCCAAAAATCAACTGTGAATTTTGTTTTTATAGTCAAAAATTTTCAAAAATGAATTTTTYAGAAATAAAAATGTCGTGTCCTCCATGAACGAGTGCACTGATGTCCTTCGCGCAATCCTAAACTCTCCTCAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12342</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>573724</contig_pos>
        <strand>+</strand>
        <context>TGTAGAGTTA[A/G]TCTTTGTTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGGTCGGGGTTGTGCTCAACTTGAGCAAGAATCAAATTTTGTAGAGTTA</left_flank>
        <right_flank>TCTTTGTTGTTAGTTTTACAAACGTTTACACCTGCTAGCACATCACTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTATCCAGTAATGTCTCCAATCACTTTTTTTAGGTCGAATCCGAGACCTCGCTCAAAAAATCATGGTCACCCCATGGGAAGTAGATCAAAATCTCTACTGTACACCACCAAGATTCCCGAACGAGTCCACCAACGCCAGCAGAGCTCAATCAGTGGTTGAGGAAAATCAACACAGATCCAGAACTCCGACTTTGTTGAGGTGTATAACCAATACGGATGGGTTGATGTCAGAAGAGATGCAAGCTCAATGTCTACCGATTGATTGGAGAGGAGACCGAAGAACGATAAAACTTGTTAAAGAAAGGAAGAGGAAATTGTTTCACACTAATGTCTACGAGAGCGAAATTGACATGAAGAAATTGTACATCAGTGTAAGTCAGGGAACAATAATCCGTAGAGGAAATCCGAAAAAATCCTGAGAAAACCCATGATTAAATGTTTTTCGTCGGTCGGGGTTGTGCTCAACTTGAGCAAGAATCAAATTTTGTAGAGTTAATCTTTGTTGTTAGTTTTACAAACGTTTACACCTGCTAGCACATCACTTTTTTATGCTTTTATGGATAATAGCCAAGTTTTTTTGTGAGTCTCAAAAAAATTTTTAATGTCTGTACCTAGTCACTATGCCTATTTGCTCAAATTTTTTCAGACCGCCAAAAAACTCGCCGCATTTGGTTGTAAAGTTTTTCAAGTCAAAGAGTTGCTACACGGACGAACACTTCGAAAAGTGAGTTTGACGTAGTACTGTAGCTAAAAAATTCTATCCAGAAAGTTCTATCTTTTCGATTTTAAATAATCTGTTTACGAGTCCTCCGCCTGAATAAGTACAAAACAAAAACAGTAAAAGTTATTGTTCGATGGTCGGTGACCTTAAATTTTTCATCCAGTTTTCCGTGTCTAACCACTTTTTTGTTAGTTCCAAAGCCGTCCAGAATGTTGAACAAACATTCTGTTTTGTTCGCGATTGTTTCCGAGAAAGTACAGTTACGAAATCATTTC</canonical>
            <polymorphic>ATTTTTATCCAGTAATGTCTCCAATCACTTTTTTTAGGTCGAATCCGAGACCTCGCTCAAAAAATCATGGTCACCCCATGGGAAGTAGATCAAAATCTCTACTGTACACCACCAAGATTCCCGAACGAGTCCACCAACGCCAGCAGAGCTCAATCAGTGGTTGAGGAAAATCAACACAGATCCAGAACTCCGACTTTGTTGAGGTGTATAACCAATACGGATGGGTTGATGTCAGAAGAGATGCAAGCTCAATGTCTACCGATTGATTGGAGAGGAGACCGAAGAACGATAAAACTTGTTAAAGAAAGGAAGAGGAAATTGTTTCACACTAATGTCTACGAGAGCGAAATTGACATGAAGAAATTGTACATCAGTGTAAGTCAGGGAACAATAATCCGTAGAGGAAATCCGAAAAAATCCTGAGAAAACCCATGATTAAATGTTTTTCGTCGGTCGGGGTTGTGCTCAACTTGAGCAAGAATCAAATTTTGTAGAGTTARTCTTTGTTGTTAGTTTTACAAACGTTTACACCTGCTAGCACATCACTTTTTTATGCTTTTATGGATAATAGCCAAGTTTTTTTGTGAGTCTCAAAAAAATTTTTAATGTCTGTACCTAGTCACTATGCCTATTTGCTCAAATTTTTTCAGACCGCCAAAAAACTCGCCGCATTTGGTTGTAAAGTTTTTCAAGTCAAAGAGTTGCTACACGGACGAACACTTCGAAAAGTGAGTTTGACGTAGTACTGTAGCTAAAAAATTCTATCCAGAAAGTTCTATCTTTTCGATTTTAAATAATCTGTTTACGAGTCCTCCGCCTGAATAAGTACAAAACAAAAACAGTAAAAGTTATTGTTCGATGGTCGGTGACCTTAAATTTTTCATCCAGTTTTCCGTGTCTAACCACTTTTTTGTTAGTTCCAAAGCCGTCCAGAATGTTGAACAAACATTCTGTTTTGTTCGCGATTGTTTCCGAGAAAGTACAGTTACGAAATCATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>299 187 137 128 106 82 61</canonical_bands>
                <polymorphic_bands>299 187 167 137 128 82</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACAATAATCCGTAGAGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGGCATAGTGACTAGGTACAGAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAACAATAATCCGTAGAGGAAATCCGAAAAAATCCTGAGAAAACCCATGATTAAATGTTTTTCGTCGGTCGGGGTTGTGCTCAACTTGAGCAAGAATCAAATTTTGTAGAGTTAATCTTTGTTGTTAGTTTTACAAACGTTTACACCTGCTAGCACATCACTTTTTTATGCTTTTATGGATAATAGCCAAGTTTTTTTGTGAGTCTCAAAAAAATTTTTAATGTCTGTACCTAGTCACTATGCCT</canonical_amplicon>
		<polymorphic_amplicon>GAACAATAATCCGTAGAGGAAATCCGAAAAAATCCTGAGAAAACCCATGATTAAATGTTTTTCGTCGGTCGGGGTTGTGCTCAACTTGAGCAAGAATCAAATTTTGTAGAGTTARTCTTTGTTGTTAGTTTTACAAACGTTTACACCTGCTAGCACATCACTTTTTTATGCTTTTATGGATAATAGCCAAGTTTTTTTGTGAGTCTCAAAAAAATTTTTAATGTCTGTACCTAGTCACTATGCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12343</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>598916</contig_pos>
        <strand>+</strand>
        <context>TCTGATTAAT[G/T]AACCTTATCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATTCCAGGTCCTCTCAAAAACTTTGTGATAAAATCACAATCTGATTAAT</left_flank>
        <right_flank>AACCTTATCGATTATTTTTATGATCTAATCATATTTACAACGGGCACACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGGCGTTGCTGCTGAATTTGACGGTGAGTAGCCTTTTTTTTTTCCACAAAATTCAAAAGTTTAGATCATCTCTGGCCAACACGTCTATCCAAACACTCACTACGCTAGTCTCTACGTTGAAATTGAAGTGATCGGAATTCACAACGATTGTGTCCGTGAAAAATCCAAAGTTGTCCAGAGAAATTCTGTGAATCCGATCTGGAATCACACTACACAGCTACGCATTGCTTGTGTTGATCTGGCATTCCTCCGAATCGCCGTATGTGACAGTGGCCAAAACGGACGGGTTGTTGCTCATCGAGTGGTGCCTGTCAAATGCATTCGACCCGGTTTCCGACATCTTCCGCTTCGCACATCCACGAATCTTCCAATTGACAATGCCATGATCTTTTTGAGGTAATGTTTGGCACCATCTAACTTTTTTTTCAGTTTTTAACACTAACAAACTATTCCAGGTCCTCTCAAAAACTTTGTGATAAAATCACAATCTGATTAATGAACCTTATCGATTATTTTTATGATCTAATCATATTTACAACGGGCACACATCATATAGCATTGTTTTACATAGTTTATTGTTTTTTATTTATCTCACTCATATCAAATGGAATGTTTGCTGGAGAAAAAGTTTGCTTAGTTTTCGATATCGTCTTTGTAATTTAGAATTCTTTATTTCAGAACTCGATTCGAGCAAGAAGAGCACATCTACCTCCACGACGATGACTCAAACTCTTATTGTAATTTGGAGCACACACTGGCTTATCGAACTGATTTGGTATTCTACCCAACGATTTTTCGCATGTTTAGCAAACCCATTTATGTTTTAGACTCCGAACCTCTCACCCACGCCAATTTTGAAAAAGCAAATCTTCGTGCTTCGCATCACTGGCGCGTTTGCCGATGAGACCGCAATTACTGTACACAGTGAATCGGGTAGTACGGTAAAGACAGTGATGCAGCAAGCGCTGCTGAATGCCGGAAAGAATGCGGACCAAGTT</canonical>
            <polymorphic>TTCGGCGTTGCTGCTGAATTTGACGGTGAGTAGCCTTTTTTTTTTCCACAAAATTCAAAAGTTTAGATCATCTCTGGCCAACACGTCTATCCAAACACTCACTACGCTAGTCTCTACGTTGAAATTGAAGTGATCGGAATTCACAACGATTGTGTCCGTGAAAAATCCAAAGTTGTCCAGAGAAATTCTGTGAATCCGATCTGGAATCACACTACACAGCTACGCATTGCTTGTGTTGATCTGGCATTCCTCCGAATCGCCGTATGTGACAGTGGCCAAAACGGACGGGTTGTTGCTCATCGAGTGGTGCCTGTCAAATGCATTCGACCCGGTTTCCGACATCTTCCGCTTCGCACATCCACGAATCTTCCAATTGACAATGCCATGATCTTTTTGAGGTAATGTTTGGCACCATCTAACTTTTTTTTCAGTTTTTAACACTAACAAACTATTCCAGGTCCTCTCAAAAACTTTGTGATAAAATCACAATCTGATTAATKAACCTTATCGATTATTTTTATGATCTAATCATATTTACAACGGGCACACATCATATAGCATTGTTTTACATAGTTTATTGTTTTTTATTTATCTCACTCATATCAAATGGAATGTTTGCTGGAGAAAAAGTTTGCTTAGTTTTCGATATCGTCTTTGTAATTTAGAATTCTTTATTTCAGAACTCGATTCGAGCAAGAAGAGCACATCTACCTCCACGACGATGACTCAAACTCTTATTGTAATTTGGAGCACACACTGGCTTATCGAACTGATTTGGTATTCTACCCAACGATTTTTCGCATGTTTAGCAAACCCATTTATGTTTTAGACTCCGAACCTCTCACCCACGCCAATTTTGAAAAAGCAAATCTTCGTGCTTCGCATCACTGGCGCGTTTGCCGATGAGACCGCAATTACTGTACACAGTGAATCGGGTAGTACGGTAAAGACAGTGATGCAGCAAGCGCTGCTGAATGCCGGAAAGAATGCGGACCAAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAACAAACTATTCCAGGTCCTC</pcr_primer_p1>
		<pcr_primer_p2>GAATCGAGTTCTGAAATAAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAACAAACTATTCCAGGTCCTCTCAAAAACTTTGTGATAAAATCACAATCTGATTAATGAACCTTATCGATTATTTTTATGATCTAATCATATTTACAACGGGCACACATCATATAGCATTGTTTTACATAGTTTATTGTTTTTTATTTATCTCACTCATATCAAATGGAATGTTTGCTGGAGAAAAAGTTTGCTTAGTTTTCGATATCGTCTTTGTAATTTAGAATTCTTTATTTCAGAACTCGATTC</canonical_amplicon>
		<polymorphic_amplicon>CTAACAAACTATTCCAGGTCCTCTCAAAAACTTTGTGATAAAATCACAATCTGATTAATKAACCTTATCGATTATTTTTATGATCTAATCATATTTACAACGGGCACACATCATATAGCATTGTTTTACATAGTTTATTGTTTTTTATTTATCTCACTCATATCAAATGGAATGTTTGCTGGAGAAAAAGTTTGCTTAGTTTTCGATATCGTCTTTGTAATTTAGAATTCTTTATTTCAGAACTCGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12344</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>664658</contig_pos>
        <strand></strand>
        <context>ataggtttat[G/T]gtccagtatg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAATTTGGCAAACTTATGATTTCTATTGCTTTGATCAAAATAGGTTTAT</left_flank>
        <right_flank>GTCCAGTATGTAAAGCCGTTTTTGATCAAGTTTTGTACTAAAACGTGACC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCGAAGATCTTCAACAGCTGAACGAAATCAGGAAGGAACACATCAAAAGTCTCACGGAGATAATGGAGATAAAAGATCAGAAGTTCGAGAATCTGGAGAAGATGTATCAAGGACAGGAGGAACGCTTGAAGAACTGGGATCAACTCATGAAGAATAAAGACGATATGCTCGACATCAACGAGAAGATAATCAACCGATACAAGTTGGAGGCTGAGGCACAGGAAAAAAAGATTGCTGCGCTGGAAGAGATTATCAACAAATATGGGCCGCCAAACGACACGAGCATGGTTACAAGTGAGTTTTTCAGCAAGTTCAAGAAAATATTTCAAATAAAAAAGAGTAATCACATTCGAACGGGCGGTCCAATCCTTTCAGCAAGTATATCTGGTGTCGTCGGCTTCTGGCCGGAGGTTGGTCAGATTCCGGGACAAGCTGTTACGGTCGACTGAAATTTGGCAAACTTATGATTTCTATTGCTTTGATCAAAATAGGTTTATGGTCCAGTATGTAAAGCCGTTTTTGATCAAGTTTTGTACTAAAACGTGACCACAATTCATCCAAAAGCTGAATTTATTCTCAACTTCTCAACAATTTTCCTGAATTTTTCAATTTTTGTTAAAATTGTACGAAAACTGTAAAAGTGATGTCGGTGGGCTGATAACTCGTTTCATGCTTGGTATCGTGGGAAAAATAACATGCCAGATGATAGAGCTCGGCGAGCTCCACAACCTCCAATAAGCCTCGACCATCATTGAAATCAATTAATCAAGTGTTGTTCGACATTTAATGAATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCCGTTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAAGTATGATTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAGCTGTTTTCGAATTGTTTTTTCAAATTTGTGAAATTTTCC</canonical>
            <polymorphic>AATCGAAGATCTTCAACAGCTGAACGAAATCAGGAAGGAACACATCAAAAGTCTCACGGAGATAATGGAGATAAAAGATCAGAAGTTCGAGAATCTGGAGAAGATGTATCAAGGACAGGAGGAACGCTTGAAGAACTGGGATCAACTCATGAAGAATAAAGACGATATGCTCGACATCAACGAGAAGATAATCAACCGATACAAGTTGGAGGCTGAGGCACAGGAAAAAAAGATTGCTGCGCTGGAAGAGATTATCAACAAATATGGGCCGCCAAACGACACGAGCATGGTTACAAGTGAGTTTTTCAGCAAGTTCAAGAAAATATTTCAAATAAAAAAGAGTAATCACATTCGAACGGGCGGTCCAATCCTTTCAGCAAGTATATCTGGTGTCGTCGGCTTCTGGCCGGAGGTTGGTCAGATTCCGGGACAAGCTGTTACGGTCGACTGAAATTTGGCAAACTTATGATTTCTATTGCTTTGATCAAAATAGGTTTATKGTCCAGTATGTAAAGCCGTTTTTGATCAAGTTTTGTACTAAAACGTGACCACAATTCATCCAAAAGCTGAATTTATTCTCAACTTCTCAACAATTTTCCTGAATTTTTCAATTTTTGTTAAAATTGTACGAAAACTGTAAAAGTGATGTCGGTGGGCTGATAACTCGTTTCATGCTTGGTATCGTGGGAAAAATAACATGCCAGATGATAGAGCTCGGCGAGCTCCACAACCTCCAATAAGCCTCGACCATCATTGAAATCAATTAATCAAGTGTTGTTCGACATTTAATGAATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCCGTTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAAGTATGATTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAGCTGTTTTCGAATTGTTTTTTCAAATTTGTGAAATTTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>500 362 138</canonical_bands>
                <polymorphic_bands>638 362</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>388 266 138 112 96</canonical_bands>
                <polymorphic_bands>526 266 112 96</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAAGTTCAAGAAAATATTTCAA</pcr_primer_p1>
		<pcr_primer_p2>CCAAGCATGAAACGAGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>371</pcr_amplicon_size>
		<canonical_amplicon>GCAAGTTCAAGAAAATATTTCAAATAAAAAAGAGTAATCACATTCGAACGGGCGGTCCAATCCTTTCAGCAAGTATATCTGGTGTCGTCGGCTTCTGGCCGGAGGTTGGTCAGATTCCGGGACAAGCTGTTACGGTCGACTGAAATTTGGCAAACTTATGATTTCTATTGCTTTGATCAAAATAGGTTTATGGTCCAGTATGTAAAGCCGTTTTTGATCAAGTTTTGTACTAAAACGTGACCACAATTCATCCAAAAGCTGAATTTATTCTCAACTTCTCAACAATTTTCCTGAATTTTTCAATTTTTGTTAAAATTGTACGAAAACTGTAAAAGTGATGTCGGTGGGCTGATAACTCGTTTCATGCTTGG</canonical_amplicon>
		<polymorphic_amplicon>GCAAGTTCAAGAAAATATTTCAAATAAAAAAGAGTAATCACATTCGAACGGGCGGTCCAATCCTTTCAGCAAGTATATCTGGTGTCGTCGGCTTCTGGCCGGAGGTTGGTCAGATTCCGGGACAAGCTGTTACGGTCGACTGAAATTTGGCAAACTTATGATTTCTATTGCTTTGATCAAAATAGGTTTATKGTCCAGTATGTAAAGCCGTTTTTGATCAAGTTTTGTACTAAAACGTGACCACAATTCATCCAAAAGCTGAATTTATTCTCAACTTCTCAACAATTTTCCTGAATTTTTCAATTTTTGTTAAAATTGTACGAAAACTGTAAAAGTGATGTCGGTGGGCTGATAACTCGTTTCATGCTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12345</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>664759</contig_pos>
        <strand>+</strand>
        <context>CAATTTTCCT[A/G]AATTTTTCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAATTCATCCAAAAGCTGAATTTATTCTCAACTTCTCAACAATTTTCCT</left_flank>
        <right_flank>AATTTTTCAATTTTTGTTAAAATTGTACGAAAACTGTAAAAGTGATGTCG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATGTATCAAGGACAGGAGGAACGCTTGAAGAACTGGGATCAACTCATGAAGAATAAAGACGATATGCTCGACATCAACGAGAAGATAATCAACCGATACAAGTTGGAGGCTGAGGCACAGGAAAAAAAGATTGCTGCGCTGGAAGAGATTATCAACAAATATGGGCCGCCAAACGACACGAGCATGGTTACAAGTGAGTTTTTCAGCAAGTTCAAGAAAATATTTCAAATAAAAAAGAGTAATCACATTCGAACGGGCGGTCCAATCCTTTCAGCAAGTATATCTGGTGTCGTCGGCTTCTGGCCGGAGGTTGGTCAGATTCCGGGACAAGCTGTTACGGTCGACTGAAATTTGGCAAACTTATGATTTCTATTGCTTTGATCAAAATAGGTTTATGGTCCAGTATGTAAAGCCGTTTTTGATCAAGTTTTGTACTAAAACGTGACCACAATTCATCCAAAAGCTGAATTTATTCTCAACTTCTCAACAATTTTCCTGAATTTTTCAATTTTTGTTAAAATTGTACGAAAACTGTAAAAGTGATGTCGGTGGGCTGATAACTCGTTTCATGCTTGGTATCGTGGGAAAAATAACATGCCAGATGATAGAGCTCGGCGAGCTCCACAACCTCCAATAAGCCTCGACCATCATTGAAATCAATTAATCAAGTGTTGTTCGACATTTAATGAATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCCGTTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAAGTATGATTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAGCTGTTTTCGAATTGTTTTTTCAAATTTGTGAAATTTTCCAAATTCTCTCATCAGCCTCTTTAATTTTCAGTTATGCTGTCCCACATGAAGCTTGCTGAAAAAGTCGCCGAACAAGCAAAGCTGCTCGAAACTCTCTCCAA</canonical>
            <polymorphic>AGATGTATCAAGGACAGGAGGAACGCTTGAAGAACTGGGATCAACTCATGAAGAATAAAGACGATATGCTCGACATCAACGAGAAGATAATCAACCGATACAAGTTGGAGGCTGAGGCACAGGAAAAAAAGATTGCTGCGCTGGAAGAGATTATCAACAAATATGGGCCGCCAAACGACACGAGCATGGTTACAAGTGAGTTTTTCAGCAAGTTCAAGAAAATATTTCAAATAAAAAAGAGTAATCACATTCGAACGGGCGGTCCAATCCTTTCAGCAAGTATATCTGGTGTCGTCGGCTTCTGGCCGGAGGTTGGTCAGATTCCGGGACAAGCTGTTACGGTCGACTGAAATTTGGCAAACTTATGATTTCTATTGCTTTGATCAAAATAGGTTTATGGTCCAGTATGTAAAGCCGTTTTTGATCAAGTTTTGTACTAAAACGTGACCACAATTCATCCAAAAGCTGAATTTATTCTCAACTTCTCAACAATTTTCCTRAATTTTTCAATTTTTGTTAAAATTGTACGAAAACTGTAAAAGTGATGTCGGTGGGCTGATAACTCGTTTCATGCTTGGTATCGTGGGAAAAATAACATGCCAGATGATAGAGCTCGGCGAGCTCCACAACCTCCAATAAGCCTCGACCATCATTGAAATCAATTAATCAAGTGTTGTTCGACATTTAATGAATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCCGTTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAAGTATGATTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAGCTGTTTTCGAATTGTTTTTTCAAATTTGTGAAATTTTCCAAATTCTCTCATCAGCCTCTTTAATTTTCAGTTATGCTGTCCCACATGAAGCTTGCTGAAAAAGTCGCCGAACAAGCAAAGCTGCTCGAAACTCTCTCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>353 350 118 100 32 29 9 9</canonical_bands>
                <polymorphic_bands>385 350 118 100 29 9 9</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>503 282 168 47</canonical_bands>
                <polymorphic_bands>785 168 47</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAAGTTCAAGAAAATATTTCAA</pcr_primer_p1>
		<pcr_primer_p2>CCAAGCATGAAACGAGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>371</pcr_amplicon_size>
		<canonical_amplicon>GCAAGTTCAAGAAAATATTTCAAATAAAAAAGAGTAATCACATTCGAACGGGCGGTCCAATCCTTTCAGCAAGTATATCTGGTGTCGTCGGCTTCTGGCCGGAGGTTGGTCAGATTCCGGGACAAGCTGTTACGGTCGACTGAAATTTGGCAAACTTATGATTTCTATTGCTTTGATCAAAATAGGTTTATGGTCCAGTATGTAAAGCCGTTTTTGATCAAGTTTTGTACTAAAACGTGACCACAATTCATCCAAAAGCTGAATTTATTCTCAACTTCTCAACAATTTTCCTGAATTTTTCAATTTTTGTTAAAATTGTACGAAAACTGTAAAAGTGATGTCGGTGGGCTGATAACTCGTTTCATGCTTGG</canonical_amplicon>
		<polymorphic_amplicon>GCAAGTTCAAGAAAATATTTCAAATAAAAAAGAGTAATCACATTCGAACGGGCGGTCCAATCCTTTCAGCAAGTATATCTGGTGTCGTCGGCTTCTGGCCGGAGGTTGGTCAGATTCCGGGACAAGCTGTTACGGTCGACTGAAATTTGGCAAACTTATGATTTCTATTGCTTTGATCAAAATAGGTTTATGGTCCAGTATGTAAAGCCGTTTTTGATCAAGTTTTGTACTAAAACGTGACCACAATTCATCCAAAAGCTGAATTTATTCTCAACTTCTCAACAATTTTCCTRAATTTTTCAATTTTTGTTAAAATTGTACGAAAACTGTAAAAGTGATGTCGGTGGGCTGATAACTCGTTTCATGCTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12346</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>664801</contig_pos>
        <strand>+</strand>
        <context>AACTGTAAAA[A/G]TGATGTCGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTCCTGAATTTTTCAATTTTTGTTAAAATTGTACGAAAACTGTAAAA</left_flank>
        <right_flank>TGATGTCGGTGGGCTGATAACTCGTTTCATGCTTGGTATCGTGGGAAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTCATGAAGAATAAAGACGATATGCTCGACATCAACGAGAAGATAATCAACCGATACAAGTTGGAGGCTGAGGCACAGGAAAAAAAGATTGCTGCGCTGGAAGAGATTATCAACAAATATGGGCCGCCAAACGACACGAGCATGGTTACAAGTGAGTTTTTCAGCAAGTTCAAGAAAATATTTCAAATAAAAAAGAGTAATCACATTCGAACGGGCGGTCCAATCCTTTCAGCAAGTATATCTGGTGTCGTCGGCTTCTGGCCGGAGGTTGGTCAGATTCCGGGACAAGCTGTTACGGTCGACTGAAATTTGGCAAACTTATGATTTCTATTGCTTTGATCAAAATAGGTTTATGGTCCAGTATGTAAAGCCGTTTTTGATCAAGTTTTGTACTAAAACGTGACCACAATTCATCCAAAAGCTGAATTTATTCTCAACTTCTCAACAATTTTCCTGAATTTTTCAATTTTTGTTAAAATTGTACGAAAACTGTAAAAGTGATGTCGGTGGGCTGATAACTCGTTTCATGCTTGGTATCGTGGGAAAAATAACATGCCAGATGATAGAGCTCGGCGAGCTCCACAACCTCCAATAAGCCTCGACCATCATTGAAATCAATTAATCAAGTGTTGTTCGACATTTAATGAATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCCGTTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAAGTATGATTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAGCTGTTTTCGAATTGTTTTTTCAAATTTGTGAAATTTTCCAAATTCTCTCATCAGCCTCTTTAATTTTCAGTTATGCTGTCCCACATGAAGCTTGCTGAAAAAGTCGCCGAACAAGCAAAGCTGCTCGAAACTCTCTCCAATAATACAATCGTGTTGGCTTCGGATGTCGCCGATATCTAGCT</canonical>
            <polymorphic>AACTCATGAAGAATAAAGACGATATGCTCGACATCAACGAGAAGATAATCAACCGATACAAGTTGGAGGCTGAGGCACAGGAAAAAAAGATTGCTGCGCTGGAAGAGATTATCAACAAATATGGGCCGCCAAACGACACGAGCATGGTTACAAGTGAGTTTTTCAGCAAGTTCAAGAAAATATTTCAAATAAAAAAGAGTAATCACATTCGAACGGGCGGTCCAATCCTTTCAGCAAGTATATCTGGTGTCGTCGGCTTCTGGCCGGAGGTTGGTCAGATTCCGGGACAAGCTGTTACGGTCGACTGAAATTTGGCAAACTTATGATTTCTATTGCTTTGATCAAAATAGGTTTATGGTCCAGTATGTAAAGCCGTTTTTGATCAAGTTTTGTACTAAAACGTGACCACAATTCATCCAAAAGCTGAATTTATTCTCAACTTCTCAACAATTTTCCTGAATTTTTCAATTTTTGTTAAAATTGTACGAAAACTGTAAAARTGATGTCGGTGGGCTGATAACTCGTTTCATGCTTGGTATCGTGGGAAAAATAACATGCCAGATGATAGAGCTCGGCGAGCTCCACAACCTCCAATAAGCCTCGACCATCATTGAAATCAATTAATCAAGTGTTGTTCGACATTTAATGAATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCCGTTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAAGTATGATTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAGCTGTTTTCGAATTGTTTTTTCAAATTTGTGAAATTTTCCAAATTCTCTCATCAGCCTCTTTAATTTTCAGTTATGCTGTCCCACATGAAGCTTGCTGAAAAAGTCGCCGAACAAGCAAAGCTGCTCGAAACTCTCTCCAATAATACAATCGTGTTGGCTTCGGATGTCGCCGATATCTAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>155 97 94 77 77 70 61 53 49 47 44 43 41 32 29 18 9 4</canonical_bands>
                <polymorphic_bands>155 103 97 77 77 70 61 53 49 47 44 43 41 32 29 18 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAAGTTCAAGAAAATATTTCAA</pcr_primer_p1>
		<pcr_primer_p2>TTATTTTTCCCACGATACCA</pcr_primer_p2>
		<pcr_amplicon_size>388</pcr_amplicon_size>
		<canonical_amplicon>GCAAGTTCAAGAAAATATTTCAAATAAAAAAGAGTAATCACATTCGAACGGGCGGTCCAATCCTTTCAGCAAGTATATCTGGTGTCGTCGGCTTCTGGCCGGAGGTTGGTCAGATTCCGGGACAAGCTGTTACGGTCGACTGAAATTTGGCAAACTTATGATTTCTATTGCTTTGATCAAAATAGGTTTATGGTCCAGTATGTAAAGCCGTTTTTGATCAAGTTTTGTACTAAAACGTGACCACAATTCATCCAAAAGCTGAATTTATTCTCAACTTCTCAACAATTTTCCTGAATTTTTCAATTTTTGTTAAAATTGTACGAAAACTGTAAAAGTGATGTCGGTGGGCTGATAACTCGTTTCATGCTTGGTATCGTGGGAAAAATAA</canonical_amplicon>
		<polymorphic_amplicon>GCAAGTTCAAGAAAATATTTCAAATAAAAAAGAGTAATCACATTCGAACGGGCGGTCCAATCCTTTCAGCAAGTATATCTGGTGTCGTCGGCTTCTGGCCGGAGGTTGGTCAGATTCCGGGACAAGCTGTTACGGTCGACTGAAATTTGGCAAACTTATGATTTCTATTGCTTTGATCAAAATAGGTTTATGGTCCAGTATGTAAAGCCGTTTTTGATCAAGTTTTGTACTAAAACGTGACCACAATTCATCCAAAAGCTGAATTTATTCTCAACTTCTCAACAATTTTCCTGAATTTTTCAATTTTTGTTAAAATTGTACGAAAACTGTAAAARTGATGTCGGTGGGCTGATAACTCGTTTCATGCTTGGTATCGTGGGAAAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12347</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>664921</contig_pos>
        <strand>+</strand>
        <context>ATTGAAATCA[A/C]TTAATCAAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCTCGGCGAGCTCCACAACCTCCAATAAGCCTCGACCATCATTGAAATCA</left_flank>
        <right_flank>TTAATCAAGTGTTGTTCGACATTTAATGAATCTTACCGAAGAAAAATCGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGGCCGCCAAACGACACGAGCATGGTTACAAGTGAGTTTTTCAGCAAGTTCAAGAAAATATTTCAAATAAAAAAGAGTAATCACATTCGAACGGGCGGTCCAATCCTTTCAGCAAGTATATCTGGTGTCGTCGGCTTCTGGCCGGAGGTTGGTCAGATTCCGGGACAAGCTGTTACGGTCGACTGAAATTTGGCAAACTTATGATTTCTATTGCTTTGATCAAAATAGGTTTATGGTCCAGTATGTAAAGCCGTTTTTGATCAAGTTTTGTACTAAAACGTGACCACAATTCATCCAAAAGCTGAATTTATTCTCAACTTCTCAACAATTTTCCTGAATTTTTCAATTTTTGTTAAAATTGTACGAAAACTGTAAAAGTGATGTCGGTGGGCTGATAACTCGTTTCATGCTTGGTATCGTGGGAAAAATAACATGCCAGATGATAGAGCTCGGCGAGCTCCACAACCTCCAATAAGCCTCGACCATCATTGAAATCAATTAATCAAGTGTTGTTCGACATTTAATGAATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCCGTTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAAGTATGATTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAGCTGTTTTCGAATTGTTTTTTCAAATTTGTGAAATTTTCCAAATTCTCTCATCAGCCTCTTTAATTTTCAGTTATGCTGTCCCACATGAAGCTTGCTGAAAAAGTCGCCGAACAAGCAAAGCTGCTCGAAACTCTCTCCAATAATACAATCGTGTTGGCTTCGGATGTCGCCGATATCTAGCTCCCATTCACATTCCCGTTCTTTCCCCCGGCTACGAGTCTCCCGATTCCGACATATTTTTCCCCGTCACACATATTTTTCCAATTTTCCCCTCAAAACTTTGTGTTCATCTCATTTCGTGT</canonical>
            <polymorphic>ATGGGCCGCCAAACGACACGAGCATGGTTACAAGTGAGTTTTTCAGCAAGTTCAAGAAAATATTTCAAATAAAAAAGAGTAATCACATTCGAACGGGCGGTCCAATCCTTTCAGCAAGTATATCTGGTGTCGTCGGCTTCTGGCCGGAGGTTGGTCAGATTCCGGGACAAGCTGTTACGGTCGACTGAAATTTGGCAAACTTATGATTTCTATTGCTTTGATCAAAATAGGTTTATGGTCCAGTATGTAAAGCCGTTTTTGATCAAGTTTTGTACTAAAACGTGACCACAATTCATCCAAAAGCTGAATTTATTCTCAACTTCTCAACAATTTTCCTGAATTTTTCAATTTTTGTTAAAATTGTACGAAAACTGTAAAAGTGATGTCGGTGGGCTGATAACTCGTTTCATGCTTGGTATCGTGGGAAAAATAACATGCCAGATGATAGAGCTCGGCGAGCTCCACAACCTCCAATAAGCCTCGACCATCATTGAAATCAMTTAATCAAGTGTTGTTCGACATTTAATGAATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCCGTTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAAGTATGATTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAGCTGTTTTCGAATTGTTTTTTCAAATTTGTGAAATTTTCCAAATTCTCTCATCAGCCTCTTTAATTTTCAGTTATGCTGTCCCACATGAAGCTTGCTGAAAAAGTCGCCGAACAAGCAAAGCTGCTCGAAACTCTCTCCAATAATACAATCGTGTTGGCTTCGGATGTCGCCGATATCTAGCTCCCATTCACATTCCCGTTCTTTCCCCCGGCTACGAGTCTCCCGATTCCGACATATTTTTCCCCGTCACACATATTTTTCCAATTTTCCCCTCAAAACTTTGTGTTCATCTCATTTCGTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>201 193 188 140 101 40 22 21 17 16 13 12 10 9 9 8</canonical_bands>
                <polymorphic_bands>333 201 188 101 40 22 21 17 16 13 12 10 9 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATAACATGCCAGATGATAG</pcr_primer_p1>
		<pcr_primer_p2>ATGAAATGGAAACACTTCAATC</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AAAAATAACATGCCAGATGATAGAGCTCGGCGAGCTCCACAACCTCCAATAAGCCTCGACCATCATTGAAATCAATTAATCAAGTGTTGTTCGACATTTAATGAATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCCGTTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAAGTATGATTGAAGTGTTTCCATTTCAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATAACATGCCAGATGATAGAGCTCGGCGAGCTCCACAACCTCCAATAAGCCTCGACCATCATTGAAATCAMTTAATCAAGTGTTGTTCGACATTTAATGAATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCCGTTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAAGTATGATTGAAGTGTTTCCATTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12348</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>664933</contig_pos>
        <strand>+</strand>
        <context>TAATCAAGTG[G/T]TGTTCGACAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCACAACCTCCAATAAGCCTCGACCATCATTGAAATCAATTAATCAAGTG</left_flank>
        <right_flank>TGTTCGACATTTAATGAATCTTACCGAAGAAAAATCGTCAGCCAGGACTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGACACGAGCATGGTTACAAGTGAGTTTTTCAGCAAGTTCAAGAAAATATTTCAAATAAAAAAGAGTAATCACATTCGAACGGGCGGTCCAATCCTTTCAGCAAGTATATCTGGTGTCGTCGGCTTCTGGCCGGAGGTTGGTCAGATTCCGGGACAAGCTGTTACGGTCGACTGAAATTTGGCAAACTTATGATTTCTATTGCTTTGATCAAAATAGGTTTATGGTCCAGTATGTAAAGCCGTTTTTGATCAAGTTTTGTACTAAAACGTGACCACAATTCATCCAAAAGCTGAATTTATTCTCAACTTCTCAACAATTTTCCTGAATTTTTCAATTTTTGTTAAAATTGTACGAAAACTGTAAAAGTGATGTCGGTGGGCTGATAACTCGTTTCATGCTTGGTATCGTGGGAAAAATAACATGCCAGATGATAGAGCTCGGCGAGCTCCACAACCTCCAATAAGCCTCGACCATCATTGAAATCAATTAATCAAGTGTTGTTCGACATTTAATGAATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCCGTTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAAGTATGATTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAGCTGTTTTCGAATTGTTTTTTCAAATTTGTGAAATTTTCCAAATTCTCTCATCAGCCTCTTTAATTTTCAGTTATGCTGTCCCACATGAAGCTTGCTGAAAAAGTCGCCGAACAAGCAAAGCTGCTCGAAACTCTCTCCAATAATACAATCGTGTTGGCTTCGGATGTCGCCGATATCTAGCTCCCATTCACATTCCCGTTCTTTCCCCCGGCTACGAGTCTCCCGATTCCGACATATTTTTCCCCGTCACACATATTTTTCCAATTTTCCCCTCAAAACTTTGTGTTCATCTCATTTCGTGTTTCAAACATCTC</canonical>
            <polymorphic>ACGACACGAGCATGGTTACAAGTGAGTTTTTCAGCAAGTTCAAGAAAATATTTCAAATAAAAAAGAGTAATCACATTCGAACGGGCGGTCCAATCCTTTCAGCAAGTATATCTGGTGTCGTCGGCTTCTGGCCGGAGGTTGGTCAGATTCCGGGACAAGCTGTTACGGTCGACTGAAATTTGGCAAACTTATGATTTCTATTGCTTTGATCAAAATAGGTTTATGGTCCAGTATGTAAAGCCGTTTTTGATCAAGTTTTGTACTAAAACGTGACCACAATTCATCCAAAAGCTGAATTTATTCTCAACTTCTCAACAATTTTCCTGAATTTTTCAATTTTTGTTAAAATTGTACGAAAACTGTAAAAGTGATGTCGGTGGGCTGATAACTCGTTTCATGCTTGGTATCGTGGGAAAAATAACATGCCAGATGATAGAGCTCGGCGAGCTCCACAACCTCCAATAAGCCTCGACCATCATTGAAATCAATTAATCAAGTGKTGTTCGACATTTAATGAATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCCGTTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAAGTATGATTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAGCTGTTTTCGAATTGTTTTTTCAAATTTGTGAAATTTTCCAAATTCTCTCATCAGCCTCTTTAATTTTCAGTTATGCTGTCCCACATGAAGCTTGCTGAAAAAGTCGCCGAACAAGCAAAGCTGCTCGAAACTCTCTCCAATAATACAATCGTGTTGGCTTCGGATGTCGCCGATATCTAGCTCCCATTCACATTCCCGTTCTTTCCCCCGGCTACGAGTCTCCCGATTCCGACATATTTTTCCCCGTCACACATATTTTTCCAATTTTCCCCTCAAAACTTTGTGTTCATCTCATTTCGTGTTTCAAACATCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATAACATGCCAGATGATAG</pcr_primer_p1>
		<pcr_primer_p2>ATGAAATGGAAACACTTCAATC</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AAAAATAACATGCCAGATGATAGAGCTCGGCGAGCTCCACAACCTCCAATAAGCCTCGACCATCATTGAAATCAATTAATCAAGTGTTGTTCGACATTTAATGAATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCCGTTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAAGTATGATTGAAGTGTTTCCATTTCAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATAACATGCCAGATGATAGAGCTCGGCGAGCTCCACAACCTCCAATAAGCCTCGACCATCATTGAAATCAATTAATCAAGTGKTGTTCGACATTTAATGAATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCCGTTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAAGTATGATTGAAGTGTTTCCATTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12349</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>664995</contig_pos>
        <strand>+</strand>
        <context>AATACATTCC[A/G]TTTTCAAGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATGAATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCC</left_flank>
        <right_flank>TTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAGTAATCACATTCGAACGGGCGGTCCAATCCTTTCAGCAAGTATATCTGGTGTCGTCGGCTTCTGGCCGGAGGTTGGTCAGATTCCGGGACAAGCTGTTACGGTCGACTGAAATTTGGCAAACTTATGATTTCTATTGCTTTGATCAAAATAGGTTTATGGTCCAGTATGTAAAGCCGTTTTTGATCAAGTTTTGTACTAAAACGTGACCACAATTCATCCAAAAGCTGAATTTATTCTCAACTTCTCAACAATTTTCCTGAATTTTTCAATTTTTGTTAAAATTGTACGAAAACTGTAAAAGTGATGTCGGTGGGCTGATAACTCGTTTCATGCTTGGTATCGTGGGAAAAATAACATGCCAGATGATAGAGCTCGGCGAGCTCCACAACCTCCAATAAGCCTCGACCATCATTGAAATCAATTAATCAAGTGTTGTTCGACATTTAATGAATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCCGTTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAAGTATGATTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAGCTGTTTTCGAATTGTTTTTTCAAATTTGTGAAATTTTCCAAATTCTCTCATCAGCCTCTTTAATTTTCAGTTATGCTGTCCCACATGAAGCTTGCTGAAAAAGTCGCCGAACAAGCAAAGCTGCTCGAAACTCTCTCCAATAATACAATCGTGTTGGCTTCGGATGTCGCCGATATCTAGCTCCCATTCACATTCCCGTTCTTTCCCCCGGCTACGAGTCTCCCGATTCCGACATATTTTTCCCCGTCACACATATTTTTCCAATTTTCCCCTCAAAACTTTGTGTTCATCTCATTTCGTGTTTCAAACATCTCATCGACTTTGTATTGGGGCTATTTTCCGATCTTCTCCAAATTTCTCTCGAATCTCATGACTC</canonical>
            <polymorphic>AAGAGTAATCACATTCGAACGGGCGGTCCAATCCTTTCAGCAAGTATATCTGGTGTCGTCGGCTTCTGGCCGGAGGTTGGTCAGATTCCGGGACAAGCTGTTACGGTCGACTGAAATTTGGCAAACTTATGATTTCTATTGCTTTGATCAAAATAGGTTTATGGTCCAGTATGTAAAGCCGTTTTTGATCAAGTTTTGTACTAAAACGTGACCACAATTCATCCAAAAGCTGAATTTATTCTCAACTTCTCAACAATTTTCCTGAATTTTTCAATTTTTGTTAAAATTGTACGAAAACTGTAAAAGTGATGTCGGTGGGCTGATAACTCGTTTCATGCTTGGTATCGTGGGAAAAATAACATGCCAGATGATAGAGCTCGGCGAGCTCCACAACCTCCAATAAGCCTCGACCATCATTGAAATCAATTAATCAAGTGTTGTTCGACATTTAATGAATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCCRTTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAAGTATGATTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAGCTGTTTTCGAATTGTTTTTTCAAATTTGTGAAATTTTCCAAATTCTCTCATCAGCCTCTTTAATTTTCAGTTATGCTGTCCCACATGAAGCTTGCTGAAAAAGTCGCCGAACAAGCAAAGCTGCTCGAAACTCTCTCCAATAATACAATCGTGTTGGCTTCGGATGTCGCCGATATCTAGCTCCCATTCACATTCCCGTTCTTTCCCCCGGCTACGAGTCTCCCGATTCCGACATATTTTTCCCCGTCACACATATTTTTCCAATTTTCCCCTCAAAACTTTGTGTTCATCTCATTTCGTGTTTCAAACATCTCATCGACTTTGTATTGGGGCTATTTTCCGATCTTCTCCAAATTTCTCTCGAATCTCATGACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATAACATGCCAGATGATAG</pcr_primer_p1>
		<pcr_primer_p2>ATGAAATGGAAACACTTCAATC</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AAAAATAACATGCCAGATGATAGAGCTCGGCGAGCTCCACAACCTCCAATAAGCCTCGACCATCATTGAAATCAATTAATCAAGTGTTGTTCGACATTTAATGAATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCCGTTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAAGTATGATTGAAGTGTTTCCATTTCAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATAACATGCCAGATGATAGAGCTCGGCGAGCTCCACAACCTCCAATAAGCCTCGACCATCATTGAAATCAATTAATCAAGTGTTGTTCGACATTTAATGAATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCCRTTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAAGTATGATTGAAGTGTTTCCATTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12350</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>665059</contig_pos>
        <strand>+</strand>
        <context>CCGTCAACAA[C/G]TATGATTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAA</left_flank>
        <right_flank>TATGATTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGGCCGGAGGTTGGTCAGATTCCGGGACAAGCTGTTACGGTCGACTGAAATTTGGCAAACTTATGATTTCTATTGCTTTGATCAAAATAGGTTTATGGTCCAGTATGTAAAGCCGTTTTTGATCAAGTTTTGTACTAAAACGTGACCACAATTCATCCAAAAGCTGAATTTATTCTCAACTTCTCAACAATTTTCCTGAATTTTTCAATTTTTGTTAAAATTGTACGAAAACTGTAAAAGTGATGTCGGTGGGCTGATAACTCGTTTCATGCTTGGTATCGTGGGAAAAATAACATGCCAGATGATAGAGCTCGGCGAGCTCCACAACCTCCAATAAGCCTCGACCATCATTGAAATCAATTAATCAAGTGTTGTTCGACATTTAATGAATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCCGTTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAAGTATGATTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAGCTGTTTTCGAATTGTTTTTTCAAATTTGTGAAATTTTCCAAATTCTCTCATCAGCCTCTTTAATTTTCAGTTATGCTGTCCCACATGAAGCTTGCTGAAAAAGTCGCCGAACAAGCAAAGCTGCTCGAAACTCTCTCCAATAATACAATCGTGTTGGCTTCGGATGTCGCCGATATCTAGCTCCCATTCACATTCCCGTTCTTTCCCCCGGCTACGAGTCTCCCGATTCCGACATATTTTTCCCCGTCACACATATTTTTCCAATTTTCCCCTCAAAACTTTGTGTTCATCTCATTTCGTGTTTCAAACATCTCATCGACTTTGTATTGGGGCTATTTTCCGATCTTCTCCAAATTTCTCTCGAATCTCATGACTCTTTTCGGTGTCATTCGTTTTCCTCGGCAAATAAAAACCATAGTAATAATCGTTCATAAAAATTT</canonical>
            <polymorphic>TCTGGCCGGAGGTTGGTCAGATTCCGGGACAAGCTGTTACGGTCGACTGAAATTTGGCAAACTTATGATTTCTATTGCTTTGATCAAAATAGGTTTATGGTCCAGTATGTAAAGCCGTTTTTGATCAAGTTTTGTACTAAAACGTGACCACAATTCATCCAAAAGCTGAATTTATTCTCAACTTCTCAACAATTTTCCTGAATTTTTCAATTTTTGTTAAAATTGTACGAAAACTGTAAAAGTGATGTCGGTGGGCTGATAACTCGTTTCATGCTTGGTATCGTGGGAAAAATAACATGCCAGATGATAGAGCTCGGCGAGCTCCACAACCTCCAATAAGCCTCGACCATCATTGAAATCAATTAATCAAGTGTTGTTCGACATTTAATGAATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCCGTTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAASTATGATTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAGCTGTTTTCGAATTGTTTTTTCAAATTTGTGAAATTTTCCAAATTCTCTCATCAGCCTCTTTAATTTTCAGTTATGCTGTCCCACATGAAGCTTGCTGAAAAAGTCGCCGAACAAGCAAAGCTGCTCGAAACTCTCTCCAATAATACAATCGTGTTGGCTTCGGATGTCGCCGATATCTAGCTCCCATTCACATTCCCGTTCTTTCCCCCGGCTACGAGTCTCCCGATTCCGACATATTTTTCCCCGTCACACATATTTTTCCAATTTTCCCCTCAAAACTTTGTGTTCATCTCATTTCGTGTTTCAAACATCTCATCGACTTTGTATTGGGGCTATTTTCCGATCTTCTCCAAATTTCTCTCGAATCTCATGACTCTTTTCGGTGTCATTCGTTTTCCTCGGCAAATAAAAACCATAGTAATAATCGTTCATAAAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCTTACCGAAGAAAAATCGT</pcr_primer_p1>
		<pcr_primer_p2>GGACAGCATAACTGAAAATTAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCCGTTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAAGTATGATTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAGCTGTTTTCGAATTGTTTTTTCAAATTTGTGAAATTTTCCAAATTCTCTCATCAGCCTCTTTAATTTTCAGTTATGCTGTCC</canonical_amplicon>
		<polymorphic_amplicon>AATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCCGTTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAASTATGATTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAGCTGTTTTCGAATTGTTTTTTCAAATTTGTGAAATTTTCCAAATTCTCTCATCAGCCTCTTTAATTTTCAGTTATGCTGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12351</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>665120</contig_pos>
        <strand>+</strand>
        <context>CGAAATTCAG[C/T]TGTTTTCGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAG</left_flank>
        <right_flank>TGTTTTCGAATTGTTTTTTCAAATTTGTGAAATTTTCCAAATTCTCTCAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTATGATTTCTATTGCTTTGATCAAAATAGGTTTATGGTCCAGTATGTAAAGCCGTTTTTGATCAAGTTTTGTACTAAAACGTGACCACAATTCATCCAAAAGCTGAATTTATTCTCAACTTCTCAACAATTTTCCTGAATTTTTCAATTTTTGTTAAAATTGTACGAAAACTGTAAAAGTGATGTCGGTGGGCTGATAACTCGTTTCATGCTTGGTATCGTGGGAAAAATAACATGCCAGATGATAGAGCTCGGCGAGCTCCACAACCTCCAATAAGCCTCGACCATCATTGAAATCAATTAATCAAGTGTTGTTCGACATTTAATGAATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCCGTTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAAGTATGATTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAGCTGTTTTCGAATTGTTTTTTCAAATTTGTGAAATTTTCCAAATTCTCTCATCAGCCTCTTTAATTTTCAGTTATGCTGTCCCACATGAAGCTTGCTGAAAAAGTCGCCGAACAAGCAAAGCTGCTCGAAACTCTCTCCAATAATACAATCGTGTTGGCTTCGGATGTCGCCGATATCTAGCTCCCATTCACATTCCCGTTCTTTCCCCCGGCTACGAGTCTCCCGATTCCGACATATTTTTCCCCGTCACACATATTTTTCCAATTTTCCCCTCAAAACTTTGTGTTCATCTCATTTCGTGTTTCAAACATCTCATCGACTTTGTATTGGGGCTATTTTCCGATCTTCTCCAAATTTCTCTCGAATCTCATGACTCTTTTCGGTGTCATTCGTTTTCCTCGGCAAATAAAAACCATAGTAATAATCGTTCATAAAAATTTCAACAATAAAATCATGAGACGAGTACCAGCAGTTCAACTAGTGGAATCCTGAAGATTATCC</canonical>
            <polymorphic>CTTATGATTTCTATTGCTTTGATCAAAATAGGTTTATGGTCCAGTATGTAAAGCCGTTTTTGATCAAGTTTTGTACTAAAACGTGACCACAATTCATCCAAAAGCTGAATTTATTCTCAACTTCTCAACAATTTTCCTGAATTTTTCAATTTTTGTTAAAATTGTACGAAAACTGTAAAAGTGATGTCGGTGGGCTGATAACTCGTTTCATGCTTGGTATCGTGGGAAAAATAACATGCCAGATGATAGAGCTCGGCGAGCTCCACAACCTCCAATAAGCCTCGACCATCATTGAAATCAATTAATCAAGTGTTGTTCGACATTTAATGAATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCCGTTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAAGTATGATTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAGYTGTTTTCGAATTGTTTTTTCAAATTTGTGAAATTTTCCAAATTCTCTCATCAGCCTCTTTAATTTTCAGTTATGCTGTCCCACATGAAGCTTGCTGAAAAAGTCGCCGAACAAGCAAAGCTGCTCGAAACTCTCTCCAATAATACAATCGTGTTGGCTTCGGATGTCGCCGATATCTAGCTCCCATTCACATTCCCGTTCTTTCCCCCGGCTACGAGTCTCCCGATTCCGACATATTTTTCCCCGTCACACATATTTTTCCAATTTTCCCCTCAAAACTTTGTGTTCATCTCATTTCGTGTTTCAAACATCTCATCGACTTTGTATTGGGGCTATTTTCCGATCTTCTCCAAATTTCTCTCGAATCTCATGACTCTTTTCGGTGTCATTCGTTTTCCTCGGCAAATAAAAACCATAGTAATAATCGTTCATAAAAATTTCAACAATAAAATCATGAGACGAGTACCAGCAGTTCAACTAGTGGAATCCTGAAGATTATCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>321 147 136 104 103 90 60 30 9</canonical_bands>
                <polymorphic_bands>321 193 147 136 104 60 30 9</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>169 121 90 75 57 54 53 51 42 40 37 36 31 30 28 27 23 19 9 4 4</canonical_bands>
                <polymorphic_bands>169 121 90 82 75 57 53 51 42 40 37 36 31 30 27 23 19 9 4 4</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCTTACCGAAGAAAAATCGT</pcr_primer_p1>
		<pcr_primer_p2>GGACAGCATAACTGAAAATTAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCCGTTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAAGTATGATTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAGCTGTTTTCGAATTGTTTTTTCAAATTTGTGAAATTTTCCAAATTCTCTCATCAGCCTCTTTAATTTTCAGTTATGCTGTCC</canonical_amplicon>
		<polymorphic_amplicon>AATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCCGTTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAAGTATGATTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAGYTGTTTTCGAATTGTTTTTTCAAATTTGTGAAATTTTCCAAATTCTCTCATCAGCCTCTTTAATTTTCAGTTATGCTGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12352</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>665154</contig_pos>
        <strand>+</strand>
        <context>TTTGTGAAAT[G/T]TTCCAAATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAACTCGAAATTCAGCTGTTTTCGAATTGTTTTTTCAAATTTGTGAAAT</left_flank>
        <right_flank>TTCCAAATTCTCTCATCAGCCTCTTTAATTTTCAGTTATGCTGTCCCACA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGGTCCAGTATGTAAAGCCGTTTTTGATCAAGTTTTGTACTAAAACGTGACCACAATTCATCCAAAAGCTGAATTTATTCTCAACTTCTCAACAATTTTCCTGAATTTTTCAATTTTTGTTAAAATTGTACGAAAACTGTAAAAGTGATGTCGGTGGGCTGATAACTCGTTTCATGCTTGGTATCGTGGGAAAAATAACATGCCAGATGATAGAGCTCGGCGAGCTCCACAACCTCCAATAAGCCTCGACCATCATTGAAATCAATTAATCAAGTGTTGTTCGACATTTAATGAATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCCGTTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAAGTATGATTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAGCTGTTTTCGAATTGTTTTTTCAAATTTGTGAAATTTTCCAAATTCTCTCATCAGCCTCTTTAATTTTCAGTTATGCTGTCCCACATGAAGCTTGCTGAAAAAGTCGCCGAACAAGCAAAGCTGCTCGAAACTCTCTCCAATAATACAATCGTGTTGGCTTCGGATGTCGCCGATATCTAGCTCCCATTCACATTCCCGTTCTTTCCCCCGGCTACGAGTCTCCCGATTCCGACATATTTTTCCCCGTCACACATATTTTTCCAATTTTCCCCTCAAAACTTTGTGTTCATCTCATTTCGTGTTTCAAACATCTCATCGACTTTGTATTGGGGCTATTTTCCGATCTTCTCCAAATTTCTCTCGAATCTCATGACTCTTTTCGGTGTCATTCGTTTTCCTCGGCAAATAAAAACCATAGTAATAATCGTTCATAAAAATTTCAACAATAAAATCATGAGACGAGTACCAGCAGTTCAACTAGTGGAATCCTGAAGATTATCCTTCAAGTTTATCGTCTTTTTCCTCGACTTTTGCT</canonical>
            <polymorphic>TATGGTCCAGTATGTAAAGCCGTTTTTGATCAAGTTTTGTACTAAAACGTGACCACAATTCATCCAAAAGCTGAATTTATTCTCAACTTCTCAACAATTTTCCTGAATTTTTCAATTTTTGTTAAAATTGTACGAAAACTGTAAAAGTGATGTCGGTGGGCTGATAACTCGTTTCATGCTTGGTATCGTGGGAAAAATAACATGCCAGATGATAGAGCTCGGCGAGCTCCACAACCTCCAATAAGCCTCGACCATCATTGAAATCAATTAATCAAGTGTTGTTCGACATTTAATGAATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCCGTTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAAGTATGATTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAGCTGTTTTCGAATTGTTTTTTCAAATTTGTGAAATKTTCCAAATTCTCTCATCAGCCTCTTTAATTTTCAGTTATGCTGTCCCACATGAAGCTTGCTGAAAAAGTCGCCGAACAAGCAAAGCTGCTCGAAACTCTCTCCAATAATACAATCGTGTTGGCTTCGGATGTCGCCGATATCTAGCTCCCATTCACATTCCCGTTCTTTCCCCCGGCTACGAGTCTCCCGATTCCGACATATTTTTCCCCGTCACACATATTTTTCCAATTTTCCCCTCAAAACTTTGTGTTCATCTCATTTCGTGTTTCAAACATCTCATCGACTTTGTATTGGGGCTATTTTCCGATCTTCTCCAAATTTCTCTCGAATCTCATGACTCTTTTCGGTGTCATTCGTTTTCCTCGGCAAATAAAAACCATAGTAATAATCGTTCATAAAAATTTCAACAATAAAATCATGAGACGAGTACCAGCAGTTCAACTAGTGGAATCCTGAAGATTATCCTTCAAGTTTATCGTCTTTTTCCTCGACTTTTGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>353 312 100 83 73 32 29 9 9</canonical_bands>
                <polymorphic_bands>353 312 100 83 73 32 29 18</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>201 193 140 100 90 83 56 22 21 17 16 13 12 10 9 9 8</canonical_bands>
                <polymorphic_bands>201 193 140 100 90 83 56 22 21 18 17 16 13 12 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAAGTGTTTCCATTTCATT</pcr_primer_p1>
		<pcr_primer_p2>GAATGTGAATGGGAGCTAGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAGCTGTTTTCGAATTGTTTTTTCAAATTTGTGAAATTTTCCAAATTCTCTCATCAGCCTCTTTAATTTTCAGTTATGCTGTCCCACATGAAGCTTGCTGAAAAAGTCGCCGAACAAGCAAAGCTGCTCGAAACTCTCTCCAATAATACAATCGTGTTGGCTTCGGATGTCGCCGATATCTAGCTCCCATTCACATTC</canonical_amplicon>
		<polymorphic_amplicon>TTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAGCTGTTTTCGAATTGTTTTTTCAAATTTGTGAAATKTTCCAAATTCTCTCATCAGCCTCTTTAATTTTCAGTTATGCTGTCCCACATGAAGCTTGCTGAAAAAGTCGCCGAACAAGCAAAGCTGCTCGAAACTCTCTCCAATAATACAATCGTGTTGGCTTCGGATGTCGCCGATATCTAGCTCCCATTCACATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12353</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>665177</contig_pos>
        <strand>+</strand>
        <context>TCATCAGCCT[A/C]TTTAATTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGAATTGTTTTTTCAAATTTGTGAAATTTTCCAAATTCTCTCATCAGCCT</left_flank>
        <right_flank>TTTAATTTTCAGTTATGCTGTCCCACATGAAGCTTGCTGAAAAAGTCGCC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGATCAAGTTTTGTACTAAAACGTGACCACAATTCATCCAAAAGCTGAATTTATTCTCAACTTCTCAACAATTTTCCTGAATTTTTCAATTTTTGTTAAAATTGTACGAAAACTGTAAAAGTGATGTCGGTGGGCTGATAACTCGTTTCATGCTTGGTATCGTGGGAAAAATAACATGCCAGATGATAGAGCTCGGCGAGCTCCACAACCTCCAATAAGCCTCGACCATCATTGAAATCAATTAATCAAGTGTTGTTCGACATTTAATGAATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCCGTTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAAGTATGATTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAGCTGTTTTCGAATTGTTTTTTCAAATTTGTGAAATTTTCCAAATTCTCTCATCAGCCTCTTTAATTTTCAGTTATGCTGTCCCACATGAAGCTTGCTGAAAAAGTCGCCGAACAAGCAAAGCTGCTCGAAACTCTCTCCAATAATACAATCGTGTTGGCTTCGGATGTCGCCGATATCTAGCTCCCATTCACATTCCCGTTCTTTCCCCCGGCTACGAGTCTCCCGATTCCGACATATTTTTCCCCGTCACACATATTTTTCCAATTTTCCCCTCAAAACTTTGTGTTCATCTCATTTCGTGTTTCAAACATCTCATCGACTTTGTATTGGGGCTATTTTCCGATCTTCTCCAAATTTCTCTCGAATCTCATGACTCTTTTCGGTGTCATTCGTTTTCCTCGGCAAATAAAAACCATAGTAATAATCGTTCATAAAAATTTCAACAATAAAATCATGAGACGAGTACCAGCAGTTCAACTAGTGGAATCCTGAAGATTATCCTTCAAGTTTATCGTCTTTTTCCTCGACTTTTGCTTCTGCTTCAGCTCCGCTCACAGC</canonical>
            <polymorphic>TTTTGATCAAGTTTTGTACTAAAACGTGACCACAATTCATCCAAAAGCTGAATTTATTCTCAACTTCTCAACAATTTTCCTGAATTTTTCAATTTTTGTTAAAATTGTACGAAAACTGTAAAAGTGATGTCGGTGGGCTGATAACTCGTTTCATGCTTGGTATCGTGGGAAAAATAACATGCCAGATGATAGAGCTCGGCGAGCTCCACAACCTCCAATAAGCCTCGACCATCATTGAAATCAATTAATCAAGTGTTGTTCGACATTTAATGAATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCCGTTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAAGTATGATTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAGCTGTTTTCGAATTGTTTTTTCAAATTTGTGAAATTTTCCAAATTCTCTCATCAGCCTMTTTAATTTTCAGTTATGCTGTCCCACATGAAGCTTGCTGAAAAAGTCGCCGAACAAGCAAAGCTGCTCGAAACTCTCTCCAATAATACAATCGTGTTGGCTTCGGATGTCGCCGATATCTAGCTCCCATTCACATTCCCGTTCTTTCCCCCGGCTACGAGTCTCCCGATTCCGACATATTTTTCCCCGTCACACATATTTTTCCAATTTTCCCCTCAAAACTTTGTGTTCATCTCATTTCGTGTTTCAAACATCTCATCGACTTTGTATTGGGGCTATTTTCCGATCTTCTCCAAATTTCTCTCGAATCTCATGACTCTTTTCGGTGTCATTCGTTTTCCTCGGCAAATAAAAACCATAGTAATAATCGTTCATAAAAATTTCAACAATAAAATCATGAGACGAGTACCAGCAGTTCAACTAGTGGAATCCTGAAGATTATCCTTCAAGTTTATCGTCTTTTTCCTCGACTTTTGCTTCTGCTTCAGCTCCGCTCACAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAAGTGTTTCCATTTCATT</pcr_primer_p1>
		<pcr_primer_p2>GAATGTGAATGGGAGCTAGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAGCTGTTTTCGAATTGTTTTTTCAAATTTGTGAAATTTTCCAAATTCTCTCATCAGCCTCTTTAATTTTCAGTTATGCTGTCCCACATGAAGCTTGCTGAAAAAGTCGCCGAACAAGCAAAGCTGCTCGAAACTCTCTCCAATAATACAATCGTGTTGGCTTCGGATGTCGCCGATATCTAGCTCCCATTCACATTC</canonical_amplicon>
		<polymorphic_amplicon>TTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAGCTGTTTTCGAATTGTTTTTTCAAATTTGTGAAATTTTCCAAATTCTCTCATCAGCCTMTTTAATTTTCAGTTATGCTGTCCCACATGAAGCTTGCTGAAAAAGTCGCCGAACAAGCAAAGCTGCTCGAAACTCTCTCCAATAATACAATCGTGTTGGCTTCGGATGTCGCCGATATCTAGCTCCCATTCACATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12354</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>665212</contig_pos>
        <strand>+</strand>
        <context>ACATGAAGCT[C/T]GCTGAAAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTCTCATCAGCCTCTTTAATTTTCAGTTATGCTGTCCCACATGAAGCT</left_flank>
        <right_flank>GCTGAAAAAGTCGCCGAACAAGCAAAGCTGCTCGAAACTCTCTCCAATAA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCATCCAAAAGCTGAATTTATTCTCAACTTCTCAACAATTTTCCTGAATTTTTCAATTTTTGTTAAAATTGTACGAAAACTGTAAAAGTGATGTCGGTGGGCTGATAACTCGTTTCATGCTTGGTATCGTGGGAAAAATAACATGCCAGATGATAGAGCTCGGCGAGCTCCACAACCTCCAATAAGCCTCGACCATCATTGAAATCAATTAATCAAGTGTTGTTCGACATTTAATGAATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCCGTTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAAGTATGATTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAGCTGTTTTCGAATTGTTTTTTCAAATTTGTGAAATTTTCCAAATTCTCTCATCAGCCTCTTTAATTTTCAGTTATGCTGTCCCACATGAAGCTTGCTGAAAAAGTCGCCGAACAAGCAAAGCTGCTCGAAACTCTCTCCAATAATACAATCGTGTTGGCTTCGGATGTCGCCGATATCTAGCTCCCATTCACATTCCCGTTCTTTCCCCCGGCTACGAGTCTCCCGATTCCGACATATTTTTCCCCGTCACACATATTTTTCCAATTTTCCCCTCAAAACTTTGTGTTCATCTCATTTCGTGTTTCAAACATCTCATCGACTTTGTATTGGGGCTATTTTCCGATCTTCTCCAAATTTCTCTCGAATCTCATGACTCTTTTCGGTGTCATTCGTTTTCCTCGGCAAATAAAAACCATAGTAATAATCGTTCATAAAAATTTCAACAATAAAATCATGAGACGAGTACCAGCAGTTCAACTAGTGGAATCCTGAAGATTATCCTTCAAGTTTATCGTCTTTTTCCTCGACTTTTGCTTCTGCTTCAGCTCCGCTCACAGCTCCCTGCTTTGTCACAAAAGCATTAAACGCAGCTT</canonical>
            <polymorphic>TTCATCCAAAAGCTGAATTTATTCTCAACTTCTCAACAATTTTCCTGAATTTTTCAATTTTTGTTAAAATTGTACGAAAACTGTAAAAGTGATGTCGGTGGGCTGATAACTCGTTTCATGCTTGGTATCGTGGGAAAAATAACATGCCAGATGATAGAGCTCGGCGAGCTCCACAACCTCCAATAAGCCTCGACCATCATTGAAATCAATTAATCAAGTGTTGTTCGACATTTAATGAATCTTACCGAAGAAAAATCGTCAGCCAGGACTTTAATACATTCCGTTTTCAAGGGAGGTAGTAAAGCTTTCTGAGCGTGAAGCGAGTTATCAGCCGGCCCGTCAACAAGTATGATTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAGCTGTTTTCGAATTGTTTTTTCAAATTTGTGAAATTTTCCAAATTCTCTCATCAGCCTCTTTAATTTTCAGTTATGCTGTCCCACATGAAGCTYGCTGAAAAAGTCGCCGAACAAGCAAAGCTGCTCGAAACTCTCTCCAATAATACAATCGTGTTGGCTTCGGATGTCGCCGATATCTAGCTCCCATTCACATTCCCGTTCTTTCCCCCGGCTACGAGTCTCCCGATTCCGACATATTTTTCCCCGTCACACATATTTTTCCAATTTTCCCCTCAAAACTTTGTGTTCATCTCATTTCGTGTTTCAAACATCTCATCGACTTTGTATTGGGGCTATTTTCCGATCTTCTCCAAATTTCTCTCGAATCTCATGACTCTTTTCGGTGTCATTCGTTTTCCTCGGCAAATAAAAACCATAGTAATAATCGTTCATAAAAATTTCAACAATAAAATCATGAGACGAGTACCAGCAGTTCAACTAGTGGAATCCTGAAGATTATCCTTCAAGTTTATCGTCTTTTTCCTCGACTTTTGCTTCTGCTTCAGCTCCGCTCACAGCTCCCTGCTTTGTCACAAAAGCATTAAACGCAGCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 302 193</canonical_bands>
                <polymorphic_bands>698 302</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAAGTGTTTCCATTTCATT</pcr_primer_p1>
		<pcr_primer_p2>GAATGTGAATGGGAGCTAGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAGCTGTTTTCGAATTGTTTTTTCAAATTTGTGAAATTTTCCAAATTCTCTCATCAGCCTCTTTAATTTTCAGTTATGCTGTCCCACATGAAGCTTGCTGAAAAAGTCGCCGAACAAGCAAAGCTGCTCGAAACTCTCTCCAATAATACAATCGTGTTGGCTTCGGATGTCGCCGATATCTAGCTCCCATTCACATTC</canonical_amplicon>
		<polymorphic_amplicon>TTGAAGTGTTTCCATTTCATTGGCTGGCTACTTCTAAAATGAACTCGAAATTCAGCTGTTTTCGAATTGTTTTTTCAAATTTGTGAAATTTTCCAAATTCTCTCATCAGCCTCTTTAATTTTCAGTTATGCTGTCCCACATGAAGCTYGCTGAAAAAGTCGCCGAACAAGCAAAGCTGCTCGAAACTCTCTCCAATAATACAATCGTGTTGGCTTCGGATGTCGCCGATATCTAGCTCCCATTCACATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12355</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>667840</contig_pos>
        <strand>+</strand>
        <context>ATTTTCAAAT[G/T]GTTTTAGGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTGGAAATTACTTCACGTGAAAACTGATTTTATGACATATTTTCAAAT</left_flank>
        <right_flank>GTTTTAGGGAAGAAAAAGGGACAGAAATAAACAAAAAAAAAGGAAGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGTCGGGAACGTCTTTTTCGTCGGCGAATTCTGAAAAAAAAGGAGCTCAATCTAGGTTTTTAGTTTTCAAGCGAATTTAAAATTAGTTCAAAAATATGTTGAACTCACTGTGAAGTCCGCTTGTTGGTGGCGCACATTTCAATGCGGTTGATCTCCAAGCCGCGATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCCAGTTGCAGTTATTTTTGGTCATTCATTATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGAAAAAAATTAATTATCTTGTGAAGATTTTTAAGAAAATAATTTTGGAAATTACTTCACGTGAAAACTGATTTTATGACATATTTTCAAATGGTTTTAGGGAAGAAAAAGGGACAGAAATAAACAAAAAAAAAGGAAGAAAAAGAAATTCATAAACAATGGCTAACTCCAATTTTTGAACAAGTAAAATTTTTATTGATTTCTCAAAGAGGAAGATGGAACAACTAGAGAATACGAAGAACAACGATAAACAGGAAAAGTCATGAATAAAAAAAATAAAAAAATACACTACCAAATTCATGAAAAAATGACAAAAACGGAAGTTCCTGAATTTTTAGAGAATAAGTACGTTCTGTGGTGTCTAGCTTTCCAACAAAAATGCTTTTCAGAATCAACAACATCCCAGGCCGGAGCACACATCTTTCGGAAGATAGAAAACTGAAGTTTATCAAGTTGGGAGACAAAATTCCCCATCCTTCATATATTGTAAAAATATTTTTAGTTCACGAATTCCTTGTATGACACCTTTTTCAGAATCATCGGGCTCTTGGAAAATTCTTCGATTCGGGAGTATTGGACAATGATCGTAATTC</canonical>
            <polymorphic>GACGTCGGGAACGTCTTTTTCGTCGGCGAATTCTGAAAAAAAAGGAGCTCAATCTAGGTTTTTAGTTTTCAAGCGAATTTAAAATTAGTTCAAAAATATGTTGAACTCACTGTGAAGTCCGCTTGTTGGTGGCGCACATTTCAATGCGGTTGATCTCCAAGCCGCGATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCCAGTTGCAGTTATTTTTGGTCATTCATTATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGAAAAAAATTAATTATCTTGTGAAGATTTTTAAGAAAATAATTTTGGAAATTACTTCACGTGAAAACTGATTTTATGACATATTTTCAAATKGTTTTAGGGAAGAAAAAGGGACAGAAATAAACAAAAAAAAAGGAAGAAAAAGAAATTCATAAACAATGGCTAACTCCAATTTTTGAACAAGTAAAATTTTTATTGATTTCTCAAAGAGGAAGATGGAACAACTAGAGAATACGAAGAACAACGATAAACAGGAAAAGTCATGAATAAAAAAAATAAAAAAATACACTACCAAATTCATGAAAAAATGACAAAAACGGAAGTTCCTGAATTTTTAGAGAATAAGTACGTTCTGTGGTGTCTAGCTTTCCAACAAAAATGCTTTTCAGAATCAACAACATCCCAGGCCGGAGCACACATCTTTCGGAAGATAGAAAACTGAAGTTTATCAAGTTGGGAGACAAAATTCCCCATCCTTCATATATTGTAAAAATATTTTTAGTTCACGAATTCCTTGTATGACACCTTTTTCAGAATCATCGGGCTCTTGGAAAATTCTTCGATTCGGGAGTATTGGACAATGATCGTAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAAGTTGAACAGTGTAACCTAA</pcr_primer_p1>
		<pcr_primer_p2>TTTACTTGTTCAAAAATTGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGAAAAAAATTAATTATCTTGTGAAGATTTTTAAGAAAATAATTTTGGAAATTACTTCACGTGAAAACTGATTTTATGACATATTTTCAAATGGTTTTAGGGAAGAAAAAGGGACAGAAATAAACAAAAAAAAAGGAAGAAAAAGAAATTCATAAACAATGGCTAACTCCAATTTTTGAACAAGTAAA</canonical_amplicon>
		<polymorphic_amplicon>GACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGAAAAAAATTAATTATCTTGTGAAGATTTTTAAGAAAATAATTTTGGAAATTACTTCACGTGAAAACTGATTTTATGACATATTTTCAAATKGTTTTAGGGAAGAAAAAGGGACAGAAATAAACAAAAAAAAAGGAAGAAAAAGAAATTCATAAACAATGGCTAACTCCAATTTTTGAACAAGTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12356</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>667816</contig_pos>
        <strand>+</strand>
        <context>ACGTGARAAC[A/T]GATTTTATGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGTGAAGATTTTTAAGAAAATAATTTTGGAAATTACTTCACGTGAAAAC</left_flank>
        <right_flank>GATTTTATGACATATTTTCAAATGGTTTTAGGGAAGAAAAAGGGACAGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAATTGCAAGAAACTCTTCGTCGACGTCGGGAACGTCTTTTTCGTCGGCGAATTCTGAAAAAAAAGGAGCTCAATCTAGGTTTTTAGTTTTCAAGCGAATTTAAAATTAGTTCAAAAATATGTTGAACTCACTGTGAAGTCCGCTTGTTGGTGGCGCACATTTCAATGCGGTTGATCTCCAAGCCGCGATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCCAGTTGCAGTTATTTTTGGTCATTCATTATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGAAAAAAATTAATTATCTTGTGAAGATTTTTAAGAAAATAATTTTGGAAATTACTTCACGTGAAAACTGATTTTATGACATATTTTCAAATGGTTTTAGGGAAGAAAAAGGGACAGAAATAAACAAAAAAAAAGGAAGAAAAAGAAATTCATAAACAATGGCTAACTCCAATTTTTGAACAAGTAAAATTTTTATTGATTTCTCAAAGAGGAAGATGGAACAACTAGAGAATACGAAGAACAACGATAAACAGGAAAAGTCATGAATAAAAAAAATAAAAAAATACACTACCAAATTCATGAAAAAATGACAAAAACGGAAGTTCCTGAATTTTTAGAGAATAAGTACGTTCTGTGGTGTCTAGCTTTCCAACAAAAATGCTTTTCAGAATCAACAACATCCCAGGCCGGAGCACACATCTTTCGGAAGATAGAAAACTGAAGTTTATCAAGTTGGGAGACAAAATTCCCCATCCTTCATATATTGTAAAAATATTTTTAGTTCACGAATTCCTTGTATGACACCTTTTTCAGAATCATCGGGCTCTTGGAAAATTCTTCGATTCGGG</canonical>
            <polymorphic>GATAATTGCAAGAAACTCTTCGTCGACGTCGGGAACGTCTTTTTCGTCGGCGAATTCTGAAAAAAAAGGAGCTCAATCTAGGTTTTTAGTTTTCAAGCGAATTTAAAATTAGTTCAAAAATATGTTGAACTCACTGTGAAGTCCGCTTGTTGGTGGCGCACATTTCAATGCGGTTGATCTCCAAGCCGCGATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCCAGTTGCAGTTATTTTTGGTCATTCATTATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGAAAAAAATTAATTATCTTGTGAAGATTTTTAAGAAAATAATTTTGGAAATTACTTCACGTGAAAACWGATTTTATGACATATTTTCAAATGGTTTTAGGGAAGAAAAAGGGACAGAAATAAACAAAAAAAAAGGAAGAAAAAGAAATTCATAAACAATGGCTAACTCCAATTTTTGAACAAGTAAAATTTTTATTGATTTCTCAAAGAGGAAGATGGAACAACTAGAGAATACGAAGAACAACGATAAACAGGAAAAGTCATGAATAAAAAAAATAAAAAAATACACTACCAAATTCATGAAAAAATGACAAAAACGGAAGTTCCTGAATTTTTAGAGAATAAGTACGTTCTGTGGTGTCTAGCTTTCCAACAAAAATGCTTTTCAGAATCAACAACATCCCAGGCCGGAGCACACATCTTTCGGAAGATAGAAAACTGAAGTTTATCAAGTTGGGAGACAAAATTCCCCATCCTTCATATATTGTAAAAATATTTTTAGTTCACGAATTCCTTGTATGACACCTTTTTCAGAATCATCGGGCTCTTGGAAAATTCTTCGATTCGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAAGTTGAACAGTGTAACCTAA</pcr_primer_p1>
		<pcr_primer_p2>TTTACTTGTTCAAAAATTGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGAAAAAAATTAATTATCTTGTGAAGATTTTTAAGAAAATAATTTTGGAAATTACTTCACGTGAAAACTGATTTTATGACATATTTTCAAATGGTTTTAGGGAAGAAAAAGGGACAGAAATAAACAAAAAAAAAGGAAGAAAAAGAAATTCATAAACAATGGCTAACTCCAATTTTTGAACAAGTAAA</canonical_amplicon>
		<polymorphic_amplicon>GACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGAAAAAAATTAATTATCTTGTGAAGATTTTTAAGAAAATAATTTTGGAAATTACTTCACGTGAAAACWGATTTTATGACATATTTTCAAATGGTTTTAGGGAAGAAAAAGGGACAGAAATAAACAAAAAAAAAGGAAGAAAAAGAAATTCATAAACAATGGCTAACTCCAATTTTTGAACAAGTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12357</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>667812</contig_pos>
        <strand>+</strand>
        <context>CTTCACGTGA[A/G]AACWGATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATCTTGTGAAGATTTTTAAGAAAATAATTTTGGAAATTACTTCACGTGA</left_flank>
        <right_flank>AACTGATTTTATGACATATTTTCAAATGGTTTTAGGGAAGAAAAAGGGAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTGATAATTGCAAGAAACTCTTCGTCGACGTCGGGAACGTCTTTTTCGTCGGCGAATTCTGAAAAAAAAGGAGCTCAATCTAGGTTTTTAGTTTTCAAGCGAATTTAAAATTAGTTCAAAAATATGTTGAACTCACTGTGAAGTCCGCTTGTTGGTGGCGCACATTTCAATGCGGTTGATCTCCAAGCCGCGATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCCAGTTGCAGTTATTTTTGGTCATTCATTATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGAAAAAAATTAATTATCTTGTGAAGATTTTTAAGAAAATAATTTTGGAAATTACTTCACGTGAAAACTGATTTTATGACATATTTTCAAATGGTTTTAGGGAAGAAAAAGGGACAGAAATAAACAAAAAAAAAGGAAGAAAAAGAAATTCATAAACAATGGCTAACTCCAATTTTTGAACAAGTAAAATTTTTATTGATTTCTCAAAGAGGAAGATGGAACAACTAGAGAATACGAAGAACAACGATAAACAGGAAAAGTCATGAATAAAAAAAATAAAAAAATACACTACCAAATTCATGAAAAAATGACAAAAACGGAAGTTCCTGAATTTTTAGAGAATAAGTACGTTCTGTGGTGTCTAGCTTTCCAACAAAAATGCTTTTCAGAATCAACAACATCCCAGGCCGGAGCACACATCTTTCGGAAGATAGAAAACTGAAGTTTATCAAGTTGGGAGACAAAATTCCCCATCCTTCATATATTGTAAAAATATTTTTAGTTCACGAATTCCTTGTATGACACCTTTTTCAGAATCATCGGGCTCTTGGAAAATTCTTCGATT</canonical>
            <polymorphic>CATTGATAATTGCAAGAAACTCTTCGTCGACGTCGGGAACGTCTTTTTCGTCGGCGAATTCTGAAAAAAAAGGAGCTCAATCTAGGTTTTTAGTTTTCAAGCGAATTTAAAATTAGTTCAAAAATATGTTGAACTCACTGTGAAGTCCGCTTGTTGGTGGCGCACATTTCAATGCGGTTGATCTCCAAGCCGCGATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCCAGTTGCAGTTATTTTTGGTCATTCATTATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGAAAAAAATTAATTATCTTGTGAAGATTTTTAAGAAAATAATTTTGGAAATTACTTCACGTGARAACTGATTTTATGACATATTTTCAAATGGTTTTAGGGAAGAAAAAGGGACAGAAATAAACAAAAAAAAAGGAAGAAAAAGAAATTCATAAACAATGGCTAACTCCAATTTTTGAACAAGTAAAATTTTTATTGATTTCTCAAAGAGGAAGATGGAACAACTAGAGAATACGAAGAACAACGATAAACAGGAAAAGTCATGAATAAAAAAAATAAAAAAATACACTACCAAATTCATGAAAAAATGACAAAAACGGAAGTTCCTGAATTTTTAGAGAATAAGTACGTTCTGTGGTGTCTAGCTTTCCAACAAAAATGCTTTTCAGAATCAACAACATCCCAGGCCGGAGCACACATCTTTCGGAAGATAGAAAACTGAAGTTTATCAAGTTGGGAGACAAAATTCCCCATCCTTCATATATTGTAAAAATATTTTTAGTTCACGAATTCCTTGTATGACACCTTTTTCAGAATCATCGGGCTCTTGGAAAATTCTTCGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAAGTTGAACAGTGTAACCTAA</pcr_primer_p1>
		<pcr_primer_p2>TTTACTTGTTCAAAAATTGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGAAAAAAATTAATTATCTTGTGAAGATTTTTAAGAAAATAATTTTGGAAATTACTTCACGTGAAAACTGATTTTATGACATATTTTCAAATGGTTTTAGGGAAGAAAAAGGGACAGAAATAAACAAAAAAAAAGGAAGAAAAAGAAATTCATAAACAATGGCTAACTCCAATTTTTGAACAAGTAAA</canonical_amplicon>
		<polymorphic_amplicon>GACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGAAAAAAATTAATTATCTTGTGAAGATTTTTAAGAAAATAATTTTGGAAATTACTTCACGTGARAACTGATTTTATGACATATTTTCAAATGGTTTTAGGGAAGAAAAAGGGACAGAAATAAACAAAAAAAAAGGAAGAAAAAGAAATTCATAAACAATGGCTAACTCCAATTTTTGAACAAGTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12358</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>667686</contig_pos>
        <strand>+</strand>
        <context>KGTCATTCAT[C/T]ATTTCTTCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACATCCATCATACGTATATAGTCCAGTTGCAGTTATTTTTGGTCATTCAT</left_flank>
        <right_flank>ATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTGCTTTTTTTCAGAAAATCATTAAACGCAGCTTTGCCTTCGTTGGTCAATAAACCTTTGCTGCTGTCGGCGTATTCTGGAAATTGCGTAGCTCCGGGCACAGTTTTCTGCTTTTTCAGAATATCATTGATAATTGCAAGAAACTCTTCGTCGACGTCGGGAACGTCTTTTTCGTCGGCGAATTCTGAAAAAAAAGGAGCTCAATCTAGGTTTTTAGTTTTCAAGCGAATTTAAAATTAGTTCAAAAATATGTTGAACTCACTGTGAAGTCCGCTTGTTGGTGGCGCACATTTCAATGCGGTTGATCTCCAAGCCGCGATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCCAGTTGCAGTTATTTTTGGTCATTCATTATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGAAAAAAATTAATTATCTTGTGAAGATTTTTAAGAAAATAATTTTGGAAATTACTTCACGTGAAAACTGATTTTATGACATATTTTCAAATGGTTTTAGGGAAGAAAAAGGGACAGAAATAAACAAAAAAAAAGGAAGAAAAAGAAATTCATAAACAATGGCTAACTCCAATTTTTGAACAAGTAAAATTTTTATTGATTTCTCAAAGAGGAAGATGGAACAACTAGAGAATACGAAGAACAACGATAAACAGGAAAAGTCATGAATAAAAAAAATAAAAAAATACACTACCAAATTCATGAAAAAATGACAAAAACGGAAGTTCCTGAATTTTTAGAGAATAAGTACGTTCTGTGGTGTCTAGCTTTCCAACAAAAATGCTTTTCAGAATCAACAACATCCCAGGCCGGAGCACACATCTTTCGGAAGATAGAAAAC</canonical>
            <polymorphic>TTGTGCTTTTTTTCAGAAAATCATTAAACGCAGCTTTGCCTTCGTTGGTCAATAAACCTTTGCTGCTGTCGGCGTATTCTGGAAATTGCGTAGCTCCGGGCACAGTTTTCTGCTTTTTCAGAATATCATTGATAATTGCAAGAAACTCTTCGTCGACGTCGGGAACGTCTTTTTCGTCGGCGAATTCTGAAAAAAAAGGAGCTCAATCTAGGTTTTTAGTTTTCAAGCGAATTTAAAATTAGTTCAAAAATATGTTGAACTCACTGTGAAGTCCGCTTGTTGGTGGCGCACATTTCAATGCGGTTGATCTCCAAGCCGCGATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCCAGTTGCAGTTATTTTTGGTCATTCATYATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGAAAAAAATTAATTATCTTGTGAAGATTTTTAAGAAAATAATTTTGGAAATTACTTCACGTGAAAACTGATTTTATGACATATTTTCAAATGGTTTTAGGGAAGAAAAAGGGACAGAAATAAACAAAAAAAAAGGAAGAAAAAGAAATTCATAAACAATGGCTAACTCCAATTTTTGAACAAGTAAAATTTTTATTGATTTCTCAAAGAGGAAGATGGAACAACTAGAGAATACGAAGAACAACGATAAACAGGAAAAGTCATGAATAAAAAAAATAAAAAAATACACTACCAAATTCATGAAAAAATGACAAAAACGGAAGTTCCTGAATTTTTAGAGAATAAGTACGTTCTGTGGTGTCTAGCTTTCCAACAAAAATGCTTTTCAGAATCAACAACATCCCAGGCCGGAGCACACATCTTTCGGAAGATAGAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCTTCTTGTTCTTTGTGATGA</pcr_primer_p1>
		<pcr_primer_p2>TCTTTCAGAAAATGGCTGAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCCAGTTGCAGTTATTTTTGGTCATTCATTATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCCAGTTGCAGTTATTTTTGGTCATTCATYATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12359</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>667676</contig_pos>
        <strand>+</strand>
        <context>AGTTMTTTTT[G/T]GTCATTCATY</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATATAGTATACATCCATCATACGTATATAGTCCAGTTGCAGTTATTTTT</left_flank>
        <right_flank>GTCATTCATTATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTCACAGTTTTGTGCTTTTTTTCAGAAAATCATTAAACGCAGCTTTGCCTTCGTTGGTCAATAAACCTTTGCTGCTGTCGGCGTATTCTGGAAATTGCGTAGCTCCGGGCACAGTTTTCTGCTTTTTCAGAATATCATTGATAATTGCAAGAAACTCTTCGTCGACGTCGGGAACGTCTTTTTCGTCGGCGAATTCTGAAAAAAAAGGAGCTCAATCTAGGTTTTTAGTTTTCAAGCGAATTTAAAATTAGTTCAAAAATATGTTGAACTCACTGTGAAGTCCGCTTGTTGGTGGCGCACATTTCAATGCGGTTGATCTCCAAGCCGCGATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCCAGTTGCAGTTATTTTTGGTCATTCATTATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGAAAAAAATTAATTATCTTGTGAAGATTTTTAAGAAAATAATTTTGGAAATTACTTCACGTGAAAACTGATTTTATGACATATTTTCAAATGGTTTTAGGGAAGAAAAAGGGACAGAAATAAACAAAAAAAAAGGAAGAAAAAGAAATTCATAAACAATGGCTAACTCCAATTTTTGAACAAGTAAAATTTTTATTGATTTCTCAAAGAGGAAGATGGAACAACTAGAGAATACGAAGAACAACGATAAACAGGAAAAGTCATGAATAAAAAAAATAAAAAAATACACTACCAAATTCATGAAAAAATGACAAAAACGGAAGTTCCTGAATTTTTAGAGAATAAGTACGTTCTGTGGTGTCTAGCTTTCCAACAAAAATGCTTTTCAGAATCAACAACATCCCAGGCCGGAGCACACATCTTTCGGAA</canonical>
            <polymorphic>GGTCACAGTTTTGTGCTTTTTTTCAGAAAATCATTAAACGCAGCTTTGCCTTCGTTGGTCAATAAACCTTTGCTGCTGTCGGCGTATTCTGGAAATTGCGTAGCTCCGGGCACAGTTTTCTGCTTTTTCAGAATATCATTGATAATTGCAAGAAACTCTTCGTCGACGTCGGGAACGTCTTTTTCGTCGGCGAATTCTGAAAAAAAAGGAGCTCAATCTAGGTTTTTAGTTTTCAAGCGAATTTAAAATTAGTTCAAAAATATGTTGAACTCACTGTGAAGTCCGCTTGTTGGTGGCGCACATTTCAATGCGGTTGATCTCCAAGCCGCGATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCCAGTTGCAGTTATTTTTKGTCATTCATTATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGAAAAAAATTAATTATCTTGTGAAGATTTTTAAGAAAATAATTTTGGAAATTACTTCACGTGAAAACTGATTTTATGACATATTTTCAAATGGTTTTAGGGAAGAAAAAGGGACAGAAATAAACAAAAAAAAAGGAAGAAAAAGAAATTCATAAACAATGGCTAACTCCAATTTTTGAACAAGTAAAATTTTTATTGATTTCTCAAAGAGGAAGATGGAACAACTAGAGAATACGAAGAACAACGATAAACAGGAAAAGTCATGAATAAAAAAAATAAAAAAATACACTACCAAATTCATGAAAAAATGACAAAAACGGAAGTTCCTGAATTTTTAGAGAATAAGTACGTTCTGTGGTGTCTAGCTTTCCAACAAAAATGCTTTTCAGAATCAACAACATCCCAGGCCGGAGCACACATCTTTCGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCTTCTTGTTCTTTGTGATGA</pcr_primer_p1>
		<pcr_primer_p2>TCTTTCAGAAAATGGCTGAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCCAGTTGCAGTTATTTTTGGTCATTCATTATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCCAGTTGCAGTTATTTTTKGTCATTCATTATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12360</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>667670</contig_pos>
        <strand>+</strand>
        <context>WGTTGCAGTT[A/C]TTTTTKGTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATACGTATATAGTATACATCCATCATACGTATATAGTCCAGTTGCAGTT</left_flank>
        <right_flank>TTTTTGGTCATTCATTATTTCTTCGACAAGTTGAACAGTGTAACCTAAAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTTTGGTCACAGTTTTGTGCTTTTTTTCAGAAAATCATTAAACGCAGCTTTGCCTTCGTTGGTCAATAAACCTTTGCTGCTGTCGGCGTATTCTGGAAATTGCGTAGCTCCGGGCACAGTTTTCTGCTTTTTCAGAATATCATTGATAATTGCAAGAAACTCTTCGTCGACGTCGGGAACGTCTTTTTCGTCGGCGAATTCTGAAAAAAAAGGAGCTCAATCTAGGTTTTTAGTTTTCAAGCGAATTTAAAATTAGTTCAAAAATATGTTGAACTCACTGTGAAGTCCGCTTGTTGGTGGCGCACATTTCAATGCGGTTGATCTCCAAGCCGCGATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCCAGTTGCAGTTATTTTTGGTCATTCATTATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGAAAAAAATTAATTATCTTGTGAAGATTTTTAAGAAAATAATTTTGGAAATTACTTCACGTGAAAACTGATTTTATGACATATTTTCAAATGGTTTTAGGGAAGAAAAAGGGACAGAAATAAACAAAAAAAAAGGAAGAAAAAGAAATTCATAAACAATGGCTAACTCCAATTTTTGAACAAGTAAAATTTTTATTGATTTCTCAAAGAGGAAGATGGAACAACTAGAGAATACGAAGAACAACGATAAACAGGAAAAGTCATGAATAAAAAAAATAAAAAAATACACTACCAAATTCATGAAAAAATGACAAAAACGGAAGTTCCTGAATTTTTAGAGAATAAGTACGTTCTGTGGTGTCTAGCTTTCCAACAAAAATGCTTTTCAGAATCAACAACATCCCAGGCCGGAGCACACATCTT</canonical>
            <polymorphic>AGGTTTGGTCACAGTTTTGTGCTTTTTTTCAGAAAATCATTAAACGCAGCTTTGCCTTCGTTGGTCAATAAACCTTTGCTGCTGTCGGCGTATTCTGGAAATTGCGTAGCTCCGGGCACAGTTTTCTGCTTTTTCAGAATATCATTGATAATTGCAAGAAACTCTTCGTCGACGTCGGGAACGTCTTTTTCGTCGGCGAATTCTGAAAAAAAAGGAGCTCAATCTAGGTTTTTAGTTTTCAAGCGAATTTAAAATTAGTTCAAAAATATGTTGAACTCACTGTGAAGTCCGCTTGTTGGTGGCGCACATTTCAATGCGGTTGATCTCCAAGCCGCGATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCCAGTTGCAGTTMTTTTTGGTCATTCATTATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGAAAAAAATTAATTATCTTGTGAAGATTTTTAAGAAAATAATTTTGGAAATTACTTCACGTGAAAACTGATTTTATGACATATTTTCAAATGGTTTTAGGGAAGAAAAAGGGACAGAAATAAACAAAAAAAAAGGAAGAAAAAGAAATTCATAAACAATGGCTAACTCCAATTTTTGAACAAGTAAAATTTTTATTGATTTCTCAAAGAGGAAGATGGAACAACTAGAGAATACGAAGAACAACGATAAACAGGAAAAGTCATGAATAAAAAAAATAAAAAAATACACTACCAAATTCATGAAAAAATGACAAAAACGGAAGTTCCTGAATTTTTAGAGAATAAGTACGTTCTGTGGTGTCTAGCTTTCCAACAAAAATGCTTTTCAGAATCAACAACATCCCAGGCCGGAGCACACATCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCTTCTTGTTCTTTGTGATGA</pcr_primer_p1>
		<pcr_primer_p2>TCTTTCAGAAAATGGCTGAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCCAGTTGCAGTTATTTTTGGTCATTCATTATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCCAGTTGCAGTTMTTTTTGGTCATTCATTATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12361</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>667660</contig_pos>
        <strand>+</strand>
        <context>TATATAGTCC[A/T]GTTGCAGTTM</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCC</left_flank>
        <right_flank>GTTGCAGTTATTTTTGGTCATTCATTATTTCTTCGACAAGTTGAACAGTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCAGCTCCAGGTTTGGTCACAGTTTTGTGCTTTTTTTCAGAAAATCATTAAACGCAGCTTTGCCTTCGTTGGTCAATAAACCTTTGCTGCTGTCGGCGTATTCTGGAAATTGCGTAGCTCCGGGCACAGTTTTCTGCTTTTTCAGAATATCATTGATAATTGCAAGAAACTCTTCGTCGACGTCGGGAACGTCTTTTTCGTCGGCGAATTCTGAAAAAAAAGGAGCTCAATCTAGGTTTTTAGTTTTCAAGCGAATTTAAAATTAGTTCAAAAATATGTTGAACTCACTGTGAAGTCCGCTTGTTGGTGGCGCACATTTCAATGCGGTTGATCTCCAAGCCGCGATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCCAGTTGCAGTTATTTTTGGTCATTCATTATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGAAAAAAATTAATTATCTTGTGAAGATTTTTAAGAAAATAATTTTGGAAATTACTTCACGTGAAAACTGATTTTATGACATATTTTCAAATGGTTTTAGGGAAGAAAAAGGGACAGAAATAAACAAAAAAAAAGGAAGAAAAAGAAATTCATAAACAATGGCTAACTCCAATTTTTGAACAAGTAAAATTTTTATTGATTTCTCAAAGAGGAAGATGGAACAACTAGAGAATACGAAGAACAACGATAAACAGGAAAAGTCATGAATAAAAAAAATAAAAAAATACACTACCAAATTCATGAAAAAATGACAAAAACGGAAGTTCCTGAATTTTTAGAGAATAAGTACGTTCTGTGGTGTCTAGCTTTCCAACAAAAATGCTTTTCAGAATCAACAACATCCCAGGCCGGAG</canonical>
            <polymorphic>GTTCAGCTCCAGGTTTGGTCACAGTTTTGTGCTTTTTTTCAGAAAATCATTAAACGCAGCTTTGCCTTCGTTGGTCAATAAACCTTTGCTGCTGTCGGCGTATTCTGGAAATTGCGTAGCTCCGGGCACAGTTTTCTGCTTTTTCAGAATATCATTGATAATTGCAAGAAACTCTTCGTCGACGTCGGGAACGTCTTTTTCGTCGGCGAATTCTGAAAAAAAAGGAGCTCAATCTAGGTTTTTAGTTTTCAAGCGAATTTAAAATTAGTTCAAAAATATGTTGAACTCACTGTGAAGTCCGCTTGTTGGTGGCGCACATTTCAATGCGGTTGATCTCCAAGCCGCGATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCCWGTTGCAGTTATTTTTGGTCATTCATTATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGAAAAAAATTAATTATCTTGTGAAGATTTTTAAGAAAATAATTTTGGAAATTACTTCACGTGAAAACTGATTTTATGACATATTTTCAAATGGTTTTAGGGAAGAAAAAGGGACAGAAATAAACAAAAAAAAAGGAAGAAAAAGAAATTCATAAACAATGGCTAACTCCAATTTTTGAACAAGTAAAATTTTTATTGATTTCTCAAAGAGGAAGATGGAACAACTAGAGAATACGAAGAACAACGATAAACAGGAAAAGTCATGAATAAAAAAAATAAAAAAATACACTACCAAATTCATGAAAAAATGACAAAAACGGAAGTTCCTGAATTTTTAGAGAATAAGTACGTTCTGTGGTGTCTAGCTTTCCAACAAAAATGCTTTTCAGAATCAACAACATCCCAGGCCGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCTTCTTGTTCTTTGTGATGA</pcr_primer_p1>
		<pcr_primer_p2>TCTTTCAGAAAATGGCTGAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCCAGTTGCAGTTATTTTTGGTCATTCATTATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCCWGTTGCAGTTATTTTTGGTCATTCATTATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12362</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>667575</contig_pos>
        <strand>+</strand>
        <context>TCCAATCTTR[A/G]TTTTCGATTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTG</left_flank>
        <right_flank>TTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGATGACAAAATAAGTCCCAAGAGTCCAACTTGTGGGATTTTGAAAATTATTCTTCCAGTTTGTCGTATTCTTCTCGACTGCTGGTTCAGCTCCAGGTTTGGTCACAGTTTTGTGCTTTTTTTCAGAAAATCATTAAACGCAGCTTTGCCTTCGTTGGTCAATAAACCTTTGCTGCTGTCGGCGTATTCTGGAAATTGCGTAGCTCCGGGCACAGTTTTCTGCTTTTTCAGAATATCATTGATAATTGCAAGAAACTCTTCGTCGACGTCGGGAACGTCTTTTTCGTCGGCGAATTCTGAAAAAAAAGGAGCTCAATCTAGGTTTTTAGTTTTCAAGCGAATTTAAAATTAGTTCAAAAATATGTTGAACTCACTGTGAAGTCCGCTTGTTGGTGGCGCACATTTCAATGCGGTTGATCTCCAAGCCGCGATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCCAGTTGCAGTTATTTTTGGTCATTCATTATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGAAAAAAATTAATTATCTTGTGAAGATTTTTAAGAAAATAATTTTGGAAATTACTTCACGTGAAAACTGATTTTATGACATATTTTCAAATGGTTTTAGGGAAGAAAAAGGGACAGAAATAAACAAAAAAAAAGGAAGAAAAAGAAATTCATAAACAATGGCTAACTCCAATTTTTGAACAAGTAAAATTTTTATTGATTTCTCAAAGAGGAAGATGGAACAACTAGAGAATACGAAGAACAACGATAAACAGGAAAAGTCATGAATAAAAAAAATAAAAAAATACACTACCAAATTCATGAAAAAATGACAAAAACGGAAGTTCCT</canonical>
            <polymorphic>GAGATGACAAAATAAGTCCCAAGAGTCCAACTTGTGGGATTTTGAAAATTATTCTTCCAGTTTGTCGTATTCTTCTCGACTGCTGGTTCAGCTCCAGGTTTGGTCACAGTTTTGTGCTTTTTTTCAGAAAATCATTAAACGCAGCTTTGCCTTCGTTGGTCAATAAACCTTTGCTGCTGTCGGCGTATTCTGGAAATTGCGTAGCTCCGGGCACAGTTTTCTGCTTTTTCAGAATATCATTGATAATTGCAAGAAACTCTTCGTCGACGTCGGGAACGTCTTTTTCGTCGGCGAATTCTGAAAAAAAAGGAGCTCAATCTAGGTTTTTAGTTTTCAAGCGAATTTAAAATTAGTTCAAAAATATGTTGAACTCACTGTGAAGTCCGCTTGTTGGTGGCGCACATTTCAATGCGGTTGATCTCCAAGCCGCGATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGRTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCCAGTTGCAGTTATTTTTGGTCATTCATTATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGAAAAAAATTAATTATCTTGTGAAGATTTTTAAGAAAATAATTTTGGAAATTACTTCACGTGAAAACTGATTTTATGACATATTTTCAAATGGTTTTAGGGAAGAAAAAGGGACAGAAATAAACAAAAAAAAAGGAAGAAAAAGAAATTCATAAACAATGGCTAACTCCAATTTTTGAACAAGTAAAATTTTTATTGATTTCTCAAAGAGGAAGATGGAACAACTAGAGAATACGAAGAACAACGATAAACAGGAAAAGTCATGAATAAAAAAAATAAAAAAATACACTACCAAATTCATGAAAAAATGACAAAAACGGAAGTTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCTTCTTGTTCTTTGTGATGA</pcr_primer_p1>
		<pcr_primer_p2>TCTTTCAGAAAATGGCTGAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCCAGTTGCAGTTATTTTTGGTCATTCATTATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGRTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCCAGTTGCAGTTATTTTTGGTCATTCATTATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12363</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>667574</contig_pos>
        <strand>+</strand>
        <context>ATCCAATCTT[A/G]RTTTTCGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTT</left_flank>
        <right_flank>GTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGATGACAAAATAAGTCCCAAGAGTCCAACTTGTGGGATTTTGAAAATTATTCTTCCAGTTTGTCGTATTCTTCTCGACTGCTGGTTCAGCTCCAGGTTTGGTCACAGTTTTGTGCTTTTTTTCAGAAAATCATTAAACGCAGCTTTGCCTTCGTTGGTCAATAAACCTTTGCTGCTGTCGGCGTATTCTGGAAATTGCGTAGCTCCGGGCACAGTTTTCTGCTTTTTCAGAATATCATTGATAATTGCAAGAAACTCTTCGTCGACGTCGGGAACGTCTTTTTCGTCGGCGAATTCTGAAAAAAAAGGAGCTCAATCTAGGTTTTTAGTTTTCAAGCGAATTTAAAATTAGTTCAAAAATATGTTGAACTCACTGTGAAGTCCGCTTGTTGGTGGCGCACATTTCAATGCGGTTGATCTCCAAGCCGCGATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCCAGTTGCAGTTATTTTTGGTCATTCATTATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGAAAAAAATTAATTATCTTGTGAAGATTTTTAAGAAAATAATTTTGGAAATTACTTCACGTGAAAACTGATTTTATGACATATTTTCAAATGGTTTTAGGGAAGAAAAAGGGACAGAAATAAACAAAAAAAAAGGAAGAAAAAGAAATTCATAAACAATGGCTAACTCCAATTTTTGAACAAGTAAAATTTTTATTGATTTCTCAAAGAGGAAGATGGAACAACTAGAGAATACGAAGAACAACGATAAACAGGAAAAGTCATGAATAAAAAAAATAAAAAAATACACTACCAAATTCATGAAAAAATGACAAAAACGGAAGTTCC</canonical>
            <polymorphic>TGAGATGACAAAATAAGTCCCAAGAGTCCAACTTGTGGGATTTTGAAAATTATTCTTCCAGTTTGTCGTATTCTTCTCGACTGCTGGTTCAGCTCCAGGTTTGGTCACAGTTTTGTGCTTTTTTTCAGAAAATCATTAAACGCAGCTTTGCCTTCGTTGGTCAATAAACCTTTGCTGCTGTCGGCGTATTCTGGAAATTGCGTAGCTCCGGGCACAGTTTTCTGCTTTTTCAGAATATCATTGATAATTGCAAGAAACTCTTCGTCGACGTCGGGAACGTCTTTTTCGTCGGCGAATTCTGAAAAAAAAGGAGCTCAATCTAGGTTTTTAGTTTTCAAGCGAATTTAAAATTAGTTCAAAAATATGTTGAACTCACTGTGAAGTCCGCTTGTTGGTGGCGCACATTTCAATGCGGTTGATCTCCAAGCCGCGATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTRGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCCAGTTGCAGTTATTTTTGGTCATTCATTATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGAAAAAAATTAATTATCTTGTGAAGATTTTTAAGAAAATAATTTTGGAAATTACTTCACGTGAAAACTGATTTTATGACATATTTTCAAATGGTTTTAGGGAAGAAAAAGGGACAGAAATAAACAAAAAAAAAGGAAGAAAAAGAAATTCATAAACAATGGCTAACTCCAATTTTTGAACAAGTAAAATTTTTATTGATTTCTCAAAGAGGAAGATGGAACAACTAGAGAATACGAAGAACAACGATAAACAGGAAAAGTCATGAATAAAAAAAATAAAAAAATACACTACCAAATTCATGAAAAAATGACAAAAACGGAAGTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAGCTCAATCTAGGTTTTTAG</pcr_primer_p1>
		<pcr_primer_p2>TATACGTATGAACAATGAAAAACA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGGAGCTCAATCTAGGTTTTTAGTTTTCAAGCGAATTTAAAATTAGTTCAAAAATATGTTGAACTCACTGTGAAGTCCGCTTGTTGGTGGCGCACATTTCAATGCGGTTGATCTCCAAGCCGCGATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATA</canonical_amplicon>
		<polymorphic_amplicon>AGGAGCTCAATCTAGGTTTTTAGTTTTCAAGCGAATTTAAAATTAGTTCAAAAATATGTTGAACTCACTGTGAAGTCCGCTTGTTGGTGGCGCACATTTCAATGCGGTTGATCTCCAAGCCGCGATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTRGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12364</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>667498</contig_pos>
        <strand>+</strand>
        <context>GGTTGATCTC[C/T]AAGCCGCGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACTGTGAAGTCCGCTTGTTGGTGGCGCACATTTCAATGCGGTTGATCTC</left_flank>
        <right_flank>AAGCCGCGATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGCTTTACAGAAACTTAAGCACATTGATTAACAACATATTTTTATTAATTCAAAAAAGAAACCAAATCAATAGTGAGATGACAAAATAAGTCCCAAGAGTCCAACTTGTGGGATTTTGAAAATTATTCTTCCAGTTTGTCGTATTCTTCTCGACTGCTGGTTCAGCTCCAGGTTTGGTCACAGTTTTGTGCTTTTTTTCAGAAAATCATTAAACGCAGCTTTGCCTTCGTTGGTCAATAAACCTTTGCTGCTGTCGGCGTATTCTGGAAATTGCGTAGCTCCGGGCACAGTTTTCTGCTTTTTCAGAATATCATTGATAATTGCAAGAAACTCTTCGTCGACGTCGGGAACGTCTTTTTCGTCGGCGAATTCTGAAAAAAAAGGAGCTCAATCTAGGTTTTTAGTTTTCAAGCGAATTTAAAATTAGTTCAAAAATATGTTGAACTCACTGTGAAGTCCGCTTGTTGGTGGCGCACATTTCAATGCGGTTGATCTCCAAGCCGCGATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCCAGTTGCAGTTATTTTTGGTCATTCATTATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGAAAAAAATTAATTATCTTGTGAAGATTTTTAAGAAAATAATTTTGGAAATTACTTCACGTGAAAACTGATTTTATGACATATTTTCAAATGGTTTTAGGGAAGAAAAAGGGACAGAAATAAACAAAAAAAAAGGAAGAAAAAGAAATTCATAAACAATGGCTAACTCCAATTTTTGAACAAGTAAAATTTTTATTGATTTCTCAAAGAGGAAGATGGAACAACTAGAGAATACGAAGAACAACGATAAA</canonical>
            <polymorphic>AAAAGCTTTACAGAAACTTAAGCACATTGATTAACAACATATTTTTATTAATTCAAAAAAGAAACCAAATCAATAGTGAGATGACAAAATAAGTCCCAAGAGTCCAACTTGTGGGATTTTGAAAATTATTCTTCCAGTTTGTCGTATTCTTCTCGACTGCTGGTTCAGCTCCAGGTTTGGTCACAGTTTTGTGCTTTTTTTCAGAAAATCATTAAACGCAGCTTTGCCTTCGTTGGTCAATAAACCTTTGCTGCTGTCGGCGTATTCTGGAAATTGCGTAGCTCCGGGCACAGTTTTCTGCTTTTTCAGAATATCATTGATAATTGCAAGAAACTCTTCGTCGACGTCGGGAACGTCTTTTTCGTCGGCGAATTCTGAAAAAAAAGGAGCTCAATCTAGGTTTTTAGTTTTCAAGCGAATTTAAAATTAGTTCAAAAATATGTTGAACTCACTGTGAAGTCCGCTTGTTGGTGGCGCACATTTCAATGCGGTTGATCTCYAAGCCGCGATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCCAGTTGCAGTTATTTTTGGTCATTCATTATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGAAAAAAATTAATTATCTTGTGAAGATTTTTAAGAAAATAATTTTGGAAATTACTTCACGTGAAAACTGATTTTATGACATATTTTCAAATGGTTTTAGGGAAGAAAAAGGGACAGAAATAAACAAAAAAAAAGGAAGAAAAAGAAATTCATAAACAATGGCTAACTCCAATTTTTGAACAAGTAAAATTTTTATTGATTTCTCAAAGAGGAAGATGGAACAACTAGAGAATACGAAGAACAACGATAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAGCTCAATCTAGGTTTTTAG</pcr_primer_p1>
		<pcr_primer_p2>TACGTATGAACAATGAAAAACAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGGAGCTCAATCTAGGTTTTTAGTTTTCAAGCGAATTTAAAATTAGTTCAAAAATATGTTGAACTCACTGTGAAGTCCGCTTGTTGGTGGCGCACATTTCAATGCGGTTGATCTCCAAGCCGCGATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTA</canonical_amplicon>
		<polymorphic_amplicon>AGGAGCTCAATCTAGGTTTTTAGTTTTCAAGCGAATTTAAAATTAGTTCAAAAATATGTTGAACTCACTGTGAAGTCCGCTTGTTGGTGGCGCACATTTCAATGCGGTTGATCTCYAAGCCGCGATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12366</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>669462</contig_pos>
        <strand>+</strand>
        <context>GGAAACCAAT[A/C]GAAGAAATAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCAAGCCAACATAACACCACCAACTGTTGATAACCAGCGGAAACCAAT</left_flank>
        <right_flank>GAAGAAATAAAACAAGAAATCGAAGAAATAGAAGGTCAACCAGAGCAGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGAACAGATGCTAATAAGCAAAAAAAAGTTAATTGTCAAATGAAGGTCTAGCTTTGCCAAATATTTAGATATCTATTTTTAACATAAAGTTACGTAATAGCTTTTGTCAACTCTGCCATATTTTTATAAATTACTGTGAAAAACAATATTTCAATATAGATTACAAGGGTAAATATTTACTTCGAGTAAATCCTTTTGTGAATACGGTAAATCCATTTTTTGGTAAATCGATTTACAGGTGTAAATATTTACAAAAATGATCACTGAAAAATCAAAAAGAAAAAGAAAATATCAGTGACGTGAAAAATGAAAAATCACTGTAAATCTGAAGGAAAATGCTTTCTTTTACCAATTTTTCATGAATACCAATCACTCTATTTTCCTTTTGGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATGTTCATGAATGCGGCATCAGATTTCAAGCCAACATAACACCACCAACTGTTGATAACCAGCGGAAACCAATCGAAGAAATAAAACAAGAAATCGAAGAAATAGAAGGTCAACCAGAGCAGCCGGATCCTTTTTATATAAAGCCAGAACCAGAGGCACAACGAAAGCGACATCAAAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCCGGAATGTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAAAATGACAAGCATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTTTTTATACATGATACTTTTTTGAATTTTCAAAAAAACAATATTCCAAAACATAAATAAAATAACTAGAAAATAACTGAATGTCATTTCTGCAATTTTTGAGAATATTTCGCAGTATAACTTCCTGAAAAATTATTAATTAATCCGCTGGG</canonical>
            <polymorphic>AGAGAACAGATGCTAATAAGCAAAAAAAAGTTAATTGTCAAATGAAGGTCTAGCTTTGCCAAATATTTAGATATCTATTTTTAACATAAAGTTACGTAATAGCTTTTGTCAACTCTGCCATATTTTTATAAATTACTGTGAAAAACAATATTTCAATATAGATTACAAGGGTAAATATTTACTTCGAGTAAATCCTTTTGTGAATACGGTAAATCCATTTTTTGGTAAATCGATTTACAGGTGTAAATATTTACAAAAATGATCACTGAAAAATCAAAAAGAAAAAGAAAATATCAGTGACGTGAAAAATGAAAAATCACTGTAAATCTGAAGGAAAATGCTTTCTTTTACCAATTTTTCATGAATACCAATCACTCTATTTTCCTTTTGGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATGTTCATGAATGCGGCATCAGATTTCAAGCCAACATAACACCACCAACTGTTGATAACCAGCGGAAACCAATMGAAGAAATAAAACAAGAAATCGAAGAAATAGAAGGTCAACCAGAGCAGCCGGATCCTTTTTATATAAAGCCAGAACCAGAGGCACAACGAAAGCGACATCAAAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCCGGAATGTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAAAATGACAAGCATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTTTTTATACATGATACTTTTTTGAATTTTCAAAAAAACAATATTCCAAAACATAAATAAAATAACTAGAAAATAACTGAATGTCATTTCTGCAATTTTTGAGAATATTTCGCAGTATAACTTCCTGAAAAATTATTAATTAATCCGCTGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>479 269 185 46 21</canonical_bands>
                <polymorphic_bands>479 290 185 46</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTATTTTCCTTTTGGTAAATCAT</pcr_primer_p1>
		<pcr_primer_p2>TTATTACTCAAATGCCAGTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTATTTTCCTTTTGGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATGTTCATGAATGCGGCATCAGATTTCAAGCCAACATAACACCACCAACTGTTGATAACCAGCGGAAACCAATCGAAGAAATAAAACAAGAAATCGAAGAAATAGAAGGTCAACCAGAGCAGCCGGATCCTTTTTATATAAAGCCAGAACCAGAGGCACAACGAAAGCGACATCAAAAGACTGGCATTTGAGTAATAA</canonical_amplicon>
		<polymorphic_amplicon>TCTATTTTCCTTTTGGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATGTTCATGAATGCGGCATCAGATTTCAAGCCAACATAACACCACCAACTGTTGATAACCAGCGGAAACCAATMGAAGAAATAAAACAAGAAATCGAAGAAATAGAAGGTCAACCAGAGCAGCCGGATCCTTTTTATATAAAGCCAGAACCAGAGGCACAACGAAAGCGACATCAAAAGACTGGCATTTGAGTAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12367</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>669606</contig_pos>
        <strand>+</strand>
        <context>GGATTGATTT[C/T]AATTTTTGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGACATCAAAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTT</left_flank>
        <right_flank>AATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAATATTTCAATATAGATTACAAGGGTAAATATTTACTTCGAGTAAATCCTTTTGTGAATACGGTAAATCCATTTTTTGGTAAATCGATTTACAGGTGTAAATATTTACAAAAATGATCACTGAAAAATCAAAAAGAAAAAGAAAATATCAGTGACGTGAAAAATGAAAAATCACTGTAAATCTGAAGGAAAATGCTTTCTTTTACCAATTTTTCATGAATACCAATCACTCTATTTTCCTTTTGGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATGTTCATGAATGCGGCATCAGATTTCAAGCCAACATAACACCACCAACTGTTGATAACCAGCGGAAACCAATCGAAGAAATAAAACAAGAAATCGAAGAAATAGAAGGTCAACCAGAGCAGCCGGATCCTTTTTATATAAAGCCAGAACCAGAGGCACAACGAAAGCGACATCAAAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCCGGAATGTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAAAATGACAAGCATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTTTTTATACATGATACTTTTTTGAATTTTCAAAAAAACAATATTCCAAAACATAAATAAAATAACTAGAAAATAACTGAATGTCATTTCTGCAATTTTTGAGAATATTTCGCAGTATAACTTCCTGAAAAATTATTAATTAATCCGCTGGGGAGCTAACCATTCTGACAATCTAATTGAACTTCAACTTTTTTATTCCTTTCAAAACTGCTGCTTTCTCACTCATCCAAAGGTTTGTTGGAGGTTGTATATTCAACCACACATGTTCTCATCTTTTTTCTGGTCCAAGTCTTTTG</canonical>
            <polymorphic>ACAATATTTCAATATAGATTACAAGGGTAAATATTTACTTCGAGTAAATCCTTTTGTGAATACGGTAAATCCATTTTTTGGTAAATCGATTTACAGGTGTAAATATTTACAAAAATGATCACTGAAAAATCAAAAAGAAAAAGAAAATATCAGTGACGTGAAAAATGAAAAATCACTGTAAATCTGAAGGAAAATGCTTTCTTTTACCAATTTTTCATGAATACCAATCACTCTATTTTCCTTTTGGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATGTTCATGAATGCGGCATCAGATTTCAAGCCAACATAACACCACCAACTGTTGATAACCAGCGGAAACCAATCGAAGAAATAAAACAAGAAATCGAAGAAATAGAAGGTCAACCAGAGCAGCCGGATCCTTTTTATATAAAGCCAGAACCAGAGGCACAACGAAAGCGACATCAAAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTYAATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCCGGAATGTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAAAATGACAAGCATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTTTTTATACATGATACTTTTTTGAATTTTCAAAAAAACAATATTCCAAAACATAAATAAAATAACTAGAAAATAACTGAATGTCATTTCTGCAATTTTTGAGAATATTTCGCAGTATAACTTCCTGAAAAATTATTAATTAATCCGCTGGGGAGCTAACCATTCTGACAATCTAATTGAACTTCAACTTTTTTATTCCTTTCAAAACTGCTGCTTTCTCACTCATCCAAAGGTTTGTTGGAGGTTGTATATTCAACCACACATGTTCTCATCTTTTTTCTGGTCCAAGTCTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>499 156 145 87 63 46 4</canonical_bands>
                <polymorphic_bands>545 156 145 87 63 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAATCGAAGAAATAGAAGGTC</pcr_primer_p1>
		<pcr_primer_p2>CATTAGAAAACCAGAGATTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAATCGAAGAAATAGAAGGTCAACCAGAGCAGCCGGATCCTTTTTATATAAAGCCAGAACCAGAGGCACAACGAAAGCGACATCAAAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCCGGAATGTTCAAAATCTCTGGTTTTCTAATG</canonical_amplicon>
		<polymorphic_amplicon>AGAAATCGAAGAAATAGAAGGTCAACCAGAGCAGCCGGATCCTTTTTATATAAAGCCAGAACCAGAGGCACAACGAAAGCGACATCAAAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTYAATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCCGGAATGTTCAAAATCTCTGGTTTTCTAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12368</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>669622</contig_pos>
        <strand>+</strand>
        <context>TTGTGAATTT[A/T]TAATAAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTT</left_flank>
        <right_flank>TAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTACAAGGGTAAATATTTACTTCGAGTAAATCCTTTTGTGAATACGGTAAATCCATTTTTTGGTAAATCGATTTACAGGTGTAAATATTTACAAAAATGATCACTGAAAAATCAAAAAGAAAAAGAAAATATCAGTGACGTGAAAAATGAAAAATCACTGTAAATCTGAAGGAAAATGCTTTCTTTTACCAATTTTTCATGAATACCAATCACTCTATTTTCCTTTTGGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATGTTCATGAATGCGGCATCAGATTTCAAGCCAACATAACACCACCAACTGTTGATAACCAGCGGAAACCAATCGAAGAAATAAAACAAGAAATCGAAGAAATAGAAGGTCAACCAGAGCAGCCGGATCCTTTTTATATAAAGCCAGAACCAGAGGCACAACGAAAGCGACATCAAAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCCGGAATGTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAAAATGACAAGCATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTTTTTATACATGATACTTTTTTGAATTTTCAAAAAAACAATATTCCAAAACATAAATAAAATAACTAGAAAATAACTGAATGTCATTTCTGCAATTTTTGAGAATATTTCGCAGTATAACTTCCTGAAAAATTATTAATTAATCCGCTGGGGAGCTAACCATTCTGACAATCTAATTGAACTTCAACTTTTTTATTCCTTTCAAAACTGCTGCTTTCTCACTCATCCAAAGGTTTGTTGGAGGTTGTATATTCAACCACACATGTTCTCATCTTTTTTCTGGTCCAAGTCTTTTGTGCGTGTCTGTTTCTC</canonical>
            <polymorphic>GATTACAAGGGTAAATATTTACTTCGAGTAAATCCTTTTGTGAATACGGTAAATCCATTTTTTGGTAAATCGATTTACAGGTGTAAATATTTACAAAAATGATCACTGAAAAATCAAAAAGAAAAAGAAAATATCAGTGACGTGAAAAATGAAAAATCACTGTAAATCTGAAGGAAAATGCTTTCTTTTACCAATTTTTCATGAATACCAATCACTCTATTTTCCTTTTGGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATGTTCATGAATGCGGCATCAGATTTCAAGCCAACATAACACCACCAACTGTTGATAACCAGCGGAAACCAATCGAAGAAATAAAACAAGAAATCGAAGAAATAGAAGGTCAACCAGAGCAGCCGGATCCTTTTTATATAAAGCCAGAACCAGAGGCACAACGAAAGCGACATCAAAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTTWTAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCCGGAATGTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAAAATGACAAGCATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTTTTTATACATGATACTTTTTTGAATTTTCAAAAAAACAATATTCCAAAACATAAATAAAATAACTAGAAAATAACTGAATGTCATTTCTGCAATTTTTGAGAATATTTCGCAGTATAACTTCCTGAAAAATTATTAATTAATCCGCTGGGGAGCTAACCATTCTGACAATCTAATTGAACTTCAACTTTTTTATTCCTTTCAAAACTGCTGCTTTCTCACTCATCCAAAGGTTTGTTGGAGGTTGTATATTCAACCACACATGTTCTCATCTTTTTTCTGGTCCAAGTCTTTTGTGCGTGTCTGTTTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAATCGAAGAAATAGAAGGTC</pcr_primer_p1>
		<pcr_primer_p2>CATTAGAAAACCAGAGATTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAATCGAAGAAATAGAAGGTCAACCAGAGCAGCCGGATCCTTTTTATATAAAGCCAGAACCAGAGGCACAACGAAAGCGACATCAAAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCCGGAATGTTCAAAATCTCTGGTTTTCTAATG</canonical_amplicon>
		<polymorphic_amplicon>AGAAATCGAAGAAATAGAAGGTCAACCAGAGCAGCCGGATCCTTTTTATATAAAGCCAGAACCAGAGGCACAACGAAAGCGACATCAAAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTTWTAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCCGGAATGTTCAAAATCTCTGGTTTTCTAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12369</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>669692</contig_pos>
        <strand>+</strand>
        <context>AAAACATTTT[C/T]ATCCKGAATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTT</left_flank>
        <right_flank>ATCCGGAATGTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATTTACAGGTGTAAATATTTACAAAAATGATCACTGAAAAATCAAAAAGAAAAAGAAAATATCAGTGACGTGAAAAATGAAAAATCACTGTAAATCTGAAGGAAAATGCTTTCTTTTACCAATTTTTCATGAATACCAATCACTCTATTTTCCTTTTGGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATGTTCATGAATGCGGCATCAGATTTCAAGCCAACATAACACCACCAACTGTTGATAACCAGCGGAAACCAATCGAAGAAATAAAACAAGAAATCGAAGAAATAGAAGGTCAACCAGAGCAGCCGGATCCTTTTTATATAAAGCCAGAACCAGAGGCACAACGAAAGCGACATCAAAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCCGGAATGTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAAAATGACAAGCATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTTTTTATACATGATACTTTTTTGAATTTTCAAAAAAACAATATTCCAAAACATAAATAAAATAACTAGAAAATAACTGAATGTCATTTCTGCAATTTTTGAGAATATTTCGCAGTATAACTTCCTGAAAAATTATTAATTAATCCGCTGGGGAGCTAACCATTCTGACAATCTAATTGAACTTCAACTTTTTTATTCCTTTCAAAACTGCTGCTTTCTCACTCATCCAAAGGTTTGTTGGAGGTTGTATATTCAACCACACATGTTCTCATCTTTTTTCTGGTCCAAGTCTTTTGTGCGTGTCTGTTTCTCTTCCTTCACCAGGAGATAAAACCGAGCATTTTTGATCTCTAATTTGCTTTAGCTTTTCCAGTGGAAAAAA</canonical>
            <polymorphic>CGATTTACAGGTGTAAATATTTACAAAAATGATCACTGAAAAATCAAAAAGAAAAAGAAAATATCAGTGACGTGAAAAATGAAAAATCACTGTAAATCTGAAGGAAAATGCTTTCTTTTACCAATTTTTCATGAATACCAATCACTCTATTTTCCTTTTGGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATGTTCATGAATGCGGCATCAGATTTCAAGCCAACATAACACCACCAACTGTTGATAACCAGCGGAAACCAATCGAAGAAATAAAACAAGAAATCGAAGAAATAGAAGGTCAACCAGAGCAGCCGGATCCTTTTTATATAAAGCCAGAACCAGAGGCACAACGAAAGCGACATCAAAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTYATCCGGAATGTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAAAATGACAAGCATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTTTTTATACATGATACTTTTTTGAATTTTCAAAAAAACAATATTCCAAAACATAAATAAAATAACTAGAAAATAACTGAATGTCATTTCTGCAATTTTTGAGAATATTTCGCAGTATAACTTCCTGAAAAATTATTAATTAATCCGCTGGGGAGCTAACCATTCTGACAATCTAATTGAACTTCAACTTTTTTATTCCTTTCAAAACTGCTGCTTTCTCACTCATCCAAAGGTTTGTTGGAGGTTGTATATTCAACCACACATGTTCTCATCTTTTTTCTGGTCCAAGTCTTTTGTGCGTGTCTGTTTCTCTTCCTTCACCAGGAGATAAAACCGAGCATTTTTGATCTCTAATTTGCTTTAGCTTTTCCAGTGGAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGACTGGCATTTGAGTAATAA</pcr_primer_p1>
		<pcr_primer_p2>AAACCTGAGTTAACTTGTGTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCCGGAATGTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAAAATGACAAGCATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTYATCCGGAATGTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAAAATGACAAGCATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12370</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>669697</contig_pos>
        <strand>+</strand>
        <context>ATTTTYATCC[G/T]GAATGTTCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCC</left_flank>
        <right_flank>GAATGTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAAAATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACAGGTGTAAATATTTACAAAAATGATCACTGAAAAATCAAAAAGAAAAAGAAAATATCAGTGACGTGAAAAATGAAAAATCACTGTAAATCTGAAGGAAAATGCTTTCTTTTACCAATTTTTCATGAATACCAATCACTCTATTTTCCTTTTGGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATGTTCATGAATGCGGCATCAGATTTCAAGCCAACATAACACCACCAACTGTTGATAACCAGCGGAAACCAATCGAAGAAATAAAACAAGAAATCGAAGAAATAGAAGGTCAACCAGAGCAGCCGGATCCTTTTTATATAAAGCCAGAACCAGAGGCACAACGAAAGCGACATCAAAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCCGGAATGTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAAAATGACAAGCATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTTTTTATACATGATACTTTTTTGAATTTTCAAAAAAACAATATTCCAAAACATAAATAAAATAACTAGAAAATAACTGAATGTCATTTCTGCAATTTTTGAGAATATTTCGCAGTATAACTTCCTGAAAAATTATTAATTAATCCGCTGGGGAGCTAACCATTCTGACAATCTAATTGAACTTCAACTTTTTTATTCCTTTCAAAACTGCTGCTTTCTCACTCATCCAAAGGTTTGTTGGAGGTTGTATATTCAACCACACATGTTCTCATCTTTTTTCTGGTCCAAGTCTTTTGTGCGTGTCTGTTTCTCTTCCTTCACCAGGAGATAAAACCGAGCATTTTTGATCTCTAATTTGCTTTAGCTTTTCCAGTGGAAAAAAAGAGT</canonical>
            <polymorphic>TACAGGTGTAAATATTTACAAAAATGATCACTGAAAAATCAAAAAGAAAAAGAAAATATCAGTGACGTGAAAAATGAAAAATCACTGTAAATCTGAAGGAAAATGCTTTCTTTTACCAATTTTTCATGAATACCAATCACTCTATTTTCCTTTTGGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATGTTCATGAATGCGGCATCAGATTTCAAGCCAACATAACACCACCAACTGTTGATAACCAGCGGAAACCAATCGAAGAAATAAAACAAGAAATCGAAGAAATAGAAGGTCAACCAGAGCAGCCGGATCCTTTTTATATAAAGCCAGAACCAGAGGCACAACGAAAGCGACATCAAAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCCKGAATGTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAAAATGACAAGCATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTTTTTATACATGATACTTTTTTGAATTTTCAAAAAAACAATATTCCAAAACATAAATAAAATAACTAGAAAATAACTGAATGTCATTTCTGCAATTTTTGAGAATATTTCGCAGTATAACTTCCTGAAAAATTATTAATTAATCCGCTGGGGAGCTAACCATTCTGACAATCTAATTGAACTTCAACTTTTTTATTCCTTTCAAAACTGCTGCTTTCTCACTCATCCAAAGGTTTGTTGGAGGTTGTATATTCAACCACACATGTTCTCATCTTTTTTCTGGTCCAAGTCTTTTGTGCGTGTCTGTTTCTCTTCCTTCACCAGGAGATAAAACCGAGCATTTTTGATCTCTAATTTGCTTTAGCTTTTCCAGTGGAAAAAAAGAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCCGGA</site>
                <isoschizomers>
                    <enzyme>AccIII</enzyme>
                    <enzyme>BseAI</enzyme>
                    <enzyme>BsiMI</enzyme>
                    <enzyme>Bsp13I</enzyme>
                    <enzyme>BspEI</enzyme>
                    <enzyme>BspMII</enzyme>
                    <enzyme>Kpn2I</enzyme>
                    <enzyme>MroI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 314 184</canonical_bands>
                <polymorphic_bands>686 314</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGACTGGCATTTGAGTAATAA</pcr_primer_p1>
		<pcr_primer_p2>AAACCTGAGTTAACTTGTGTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCCGGAATGTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAAAATGACAAGCATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCCKGAATGTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAAAATGACAAGCATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12371</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>669752</contig_pos>
        <strand>+</strand>
        <context>AAATGACAAG[C/T]ATAGGTTCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAAAATGACAAG</left_flank>
        <right_flank>ATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATCAGTGACGTGAAAAATGAAAAATCACTGTAAATCTGAAGGAAAATGCTTTCTTTTACCAATTTTTCATGAATACCAATCACTCTATTTTCCTTTTGGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATGTTCATGAATGCGGCATCAGATTTCAAGCCAACATAACACCACCAACTGTTGATAACCAGCGGAAACCAATCGAAGAAATAAAACAAGAAATCGAAGAAATAGAAGGTCAACCAGAGCAGCCGGATCCTTTTTATATAAAGCCAGAACCAGAGGCACAACGAAAGCGACATCAAAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCCGGAATGTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAAAATGACAAGCATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTTTTTATACATGATACTTTTTTGAATTTTCAAAAAAACAATATTCCAAAACATAAATAAAATAACTAGAAAATAACTGAATGTCATTTCTGCAATTTTTGAGAATATTTCGCAGTATAACTTCCTGAAAAATTATTAATTAATCCGCTGGGGAGCTAACCATTCTGACAATCTAATTGAACTTCAACTTTTTTATTCCTTTCAAAACTGCTGCTTTCTCACTCATCCAAAGGTTTGTTGGAGGTTGTATATTCAACCACACATGTTCTCATCTTTTTTCTGGTCCAAGTCTTTTGTGCGTGTCTGTTTCTCTTCCTTCACCAGGAGATAAAACCGAGCATTTTTGATCTCTAATTTGCTTTAGCTTTTCCAGTGGAAAAAAAGAGTAAAAAAAACTAAAAACAGGAAAATTTTCATATACAAATCAGCTCAATAAAATGGT</canonical>
            <polymorphic>ATATCAGTGACGTGAAAAATGAAAAATCACTGTAAATCTGAAGGAAAATGCTTTCTTTTACCAATTTTTCATGAATACCAATCACTCTATTTTCCTTTTGGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATGTTCATGAATGCGGCATCAGATTTCAAGCCAACATAACACCACCAACTGTTGATAACCAGCGGAAACCAATCGAAGAAATAAAACAAGAAATCGAAGAAATAGAAGGTCAACCAGAGCAGCCGGATCCTTTTTATATAAAGCCAGAACCAGAGGCACAACGAAAGCGACATCAAAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCCGGAATGTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAAAATGACAAGYATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTTTTTATACATGATACTTTTTTGAATTTTCAAAAAAACAATATTCCAAAACATAAATAAAATAACTAGAAAATAACTGAATGTCATTTCTGCAATTTTTGAGAATATTTCGCAGTATAACTTCCTGAAAAATTATTAATTAATCCGCTGGGGAGCTAACCATTCTGACAATCTAATTGAACTTCAACTTTTTTATTCCTTTCAAAACTGCTGCTTTCTCACTCATCCAAAGGTTTGTTGGAGGTTGTATATTCAACCACACATGTTCTCATCTTTTTTCTGGTCCAAGTCTTTTGTGCGTGTCTGTTTCTCTTCCTTCACCAGGAGATAAAACCGAGCATTTTTGATCTCTAATTTGCTTTAGCTTTTCCAGTGGAAAAAAAGAGTAAAAAAAACTAAAAACAGGAAAATTTTCATATACAAATCAGCTCAATAAAATGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGACTGGCATTTGAGTAATAA</pcr_primer_p1>
		<pcr_primer_p2>AAACCTGAGTTAACTTGTGTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCCGGAATGTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAAAATGACAAGCATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCCGGAATGTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAAAATGACAAGYATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12372</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>669892</contig_pos>
        <strand>+</strand>
        <context>AATAACTGAA[C/T]GTCATTTCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAAACAATATTCCAAAACATAAATAAAATAACTAGAAAATAACTGAA</left_flank>
        <right_flank>GTCATTTCTGCAATTTTTGAGAATATTTCGCAGTATAACTTCCTGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATGAATGCGGCATCAGATTTCAAGCCAACATAACACCACCAACTGTTGATAACCAGCGGAAACCAATCGAAGAAATAAAACAAGAAATCGAAGAAATAGAAGGTCAACCAGAGCAGCCGGATCCTTTTTATATAAAGCCAGAACCAGAGGCACAACGAAAGCGACATCAAAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCCGGAATGTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAAAATGACAAGCATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTTTTTATACATGATACTTTTTTGAATTTTCAAAAAAACAATATTCCAAAACATAAATAAAATAACTAGAAAATAACTGAATGTCATTTCTGCAATTTTTGAGAATATTTCGCAGTATAACTTCCTGAAAAATTATTAATTAATCCGCTGGGGAGCTAACCATTCTGACAATCTAATTGAACTTCAACTTTTTTATTCCTTTCAAAACTGCTGCTTTCTCACTCATCCAAAGGTTTGTTGGAGGTTGTATATTCAACCACACATGTTCTCATCTTTTTTCTGGTCCAAGTCTTTTGTGCGTGTCTGTTTCTCTTCCTTCACCAGGAGATAAAACCGAGCATTTTTGATCTCTAATTTGCTTTAGCTTTTCCAGTGGAAAAAAAGAGTAAAAAAAACTAAAAACAGGAAAATTTTCATATACAAATCAGCTCAATAAAATGGTATTGTATTGAAAAAATATACTGAAAATCAGTCAAAGTGGGAGAAAAACATAAAAGAAAGACTGAAAATTGATTTGAGATTGTTAATAATATGTTAAAGGAAAGTTGAAGGAAAAGTAGGTCAAACGAGAAATCGAAAATT</canonical>
            <polymorphic>TCATGAATGCGGCATCAGATTTCAAGCCAACATAACACCACCAACTGTTGATAACCAGCGGAAACCAATCGAAGAAATAAAACAAGAAATCGAAGAAATAGAAGGTCAACCAGAGCAGCCGGATCCTTTTTATATAAAGCCAGAACCAGAGGCACAACGAAAGCGACATCAAAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCCGGAATGTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAAAATGACAAGCATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTTTTTATACATGATACTTTTTTGAATTTTCAAAAAAACAATATTCCAAAACATAAATAAAATAACTAGAAAATAACTGAAYGTCATTTCTGCAATTTTTGAGAATATTTCGCAGTATAACTTCCTGAAAAATTATTAATTAATCCGCTGGGGAGCTAACCATTCTGACAATCTAATTGAACTTCAACTTTTTTATTCCTTTCAAAACTGCTGCTTTCTCACTCATCCAAAGGTTTGTTGGAGGTTGTATATTCAACCACACATGTTCTCATCTTTTTTCTGGTCCAAGTCTTTTGTGCGTGTCTGTTTCTCTTCCTTCACCAGGAGATAAAACCGAGCATTTTTGATCTCTAATTTGCTTTAGCTTTTCCAGTGGAAAAAAAGAGTAAAAAAAACTAAAAACAGGAAAATTTTCATATACAAATCAGCTCAATAAAATGGTATTGTATTGAAAAAATATACTGAAAATCAGTCAAAGTGGGAGAAAAACATAAAAGAAAGACTGAAAATTGATTTGAGATTGTTAATAATATGTTAAAGGAAAGTTGAAGGAAAAGTAGGTCAAACGAGAAATCGAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGCAATGTTAAAAATGACAAG</pcr_primer_p1>
		<pcr_primer_p2>TAGATTGTCAGAATGGTTAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>GAAGCAATGTTAAAAATGACAAGCATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTTTTTATACATGATACTTTTTTGAATTTTCAAAAAAACAATATTCCAAAACATAAATAAAATAACTAGAAAATAACTGAATGTCATTTCTGCAATTTTTGAGAATATTTCGCAGTATAACTTCCTGAAAAATTATTAATTAATCCGCTGGGGAGCTAACCATTCTGACAATCTA</canonical_amplicon>
		<polymorphic_amplicon>GAAGCAATGTTAAAAATGACAAGCATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTTTTTATACATGATACTTTTTTGAATTTTCAAAAAAACAATATTCCAAAACATAAATAAAATAACTAGAAAATAACTGAAYGTCATTTCTGCAATTTTTGAGAATATTTCGCAGTATAACTTCCTGAAAAATTATTAATTAATCCGCTGGGGAGCTAACCATTCTGACAATCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12373</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>669917</contig_pos>
        <strand>+</strand>
        <context>TTTTGAGAAT[A/G]TTTCGCAGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAAAATAACTAGAAAATAACTGAATGTCATTTCTGCAATTTTTGAGAAT</left_flank>
        <right_flank>TTTCGCAGTATAACTTCCTGAAAAATTATTAATTAATCCGCTGGGGAGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCAACATAACACCACCAACTGTTGATAACCAGCGGAAACCAATCGAAGAAATAAAACAAGAAATCGAAGAAATAGAAGGTCAACCAGAGCAGCCGGATCCTTTTTATATAAAGCCAGAACCAGAGGCACAACGAAAGCGACATCAAAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCCGGAATGTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAAAATGACAAGCATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTTTTTATACATGATACTTTTTTGAATTTTCAAAAAAACAATATTCCAAAACATAAATAAAATAACTAGAAAATAACTGAATGTCATTTCTGCAATTTTTGAGAATATTTCGCAGTATAACTTCCTGAAAAATTATTAATTAATCCGCTGGGGAGCTAACCATTCTGACAATCTAATTGAACTTCAACTTTTTTATTCCTTTCAAAACTGCTGCTTTCTCACTCATCCAAAGGTTTGTTGGAGGTTGTATATTCAACCACACATGTTCTCATCTTTTTTCTGGTCCAAGTCTTTTGTGCGTGTCTGTTTCTCTTCCTTCACCAGGAGATAAAACCGAGCATTTTTGATCTCTAATTTGCTTTAGCTTTTCCAGTGGAAAAAAAGAGTAAAAAAAACTAAAAACAGGAAAATTTTCATATACAAATCAGCTCAATAAAATGGTATTGTATTGAAAAAATATACTGAAAATCAGTCAAAGTGGGAGAAAAACATAAAAGAAAGACTGAAAATTGATTTGAGATTGTTAATAATATGTTAAAGGAAAGTTGAAGGAAAAGTAGGTCAAACGAGAAATCGAAAATTTTGAAGATTGTCATCAAATCAACCA</canonical>
            <polymorphic>GCCAACATAACACCACCAACTGTTGATAACCAGCGGAAACCAATCGAAGAAATAAAACAAGAAATCGAAGAAATAGAAGGTCAACCAGAGCAGCCGGATCCTTTTTATATAAAGCCAGAACCAGAGGCACAACGAAAGCGACATCAAAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCCGGAATGTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAAAATGACAAGCATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTTTTTATACATGATACTTTTTTGAATTTTCAAAAAAACAATATTCCAAAACATAAATAAAATAACTAGAAAATAACTGAATGTCATTTCTGCAATTTTTGAGAATRTTTCGCAGTATAACTTCCTGAAAAATTATTAATTAATCCGCTGGGGAGCTAACCATTCTGACAATCTAATTGAACTTCAACTTTTTTATTCCTTTCAAAACTGCTGCTTTCTCACTCATCCAAAGGTTTGTTGGAGGTTGTATATTCAACCACACATGTTCTCATCTTTTTTCTGGTCCAAGTCTTTTGTGCGTGTCTGTTTCTCTTCCTTCACCAGGAGATAAAACCGAGCATTTTTGATCTCTAATTTGCTTTAGCTTTTCCAGTGGAAAAAAAGAGTAAAAAAAACTAAAAACAGGAAAATTTTCATATACAAATCAGCTCAATAAAATGGTATTGTATTGAAAAAATATACTGAAAATCAGTCAAAGTGGGAGAAAAACATAAAAGAAAGACTGAAAATTGATTTGAGATTGTTAATAATATGTTAAAGGAAAGTTGAAGGAAAAGTAGGTCAAACGAGAAATCGAAAATTTTGAAGATTGTCATCAAATCAACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 435 64</canonical_bands>
                <polymorphic_bands>565 435</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGCAATGTTAAAAATGACAAG</pcr_primer_p1>
		<pcr_primer_p2>TAGATTGTCAGAATGGTTAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>GAAGCAATGTTAAAAATGACAAGCATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTTTTTATACATGATACTTTTTTGAATTTTCAAAAAAACAATATTCCAAAACATAAATAAAATAACTAGAAAATAACTGAATGTCATTTCTGCAATTTTTGAGAATATTTCGCAGTATAACTTCCTGAAAAATTATTAATTAATCCGCTGGGGAGCTAACCATTCTGACAATCTA</canonical_amplicon>
		<polymorphic_amplicon>GAAGCAATGTTAAAAATGACAAGCATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTTTTTATACATGATACTTTTTTGAATTTTCAAAAAAACAATATTCCAAAACATAAATAAAATAACTAGAAAATAACTGAATGTCATTTCTGCAATTTTTGAGAATRTTTCGCAGTATAACTTCCTGAAAAATTATTAATTAATCCGCTGGGGAGCTAACCATTCTGACAATCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12374</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>669934</contig_pos>
        <strand>+</strand>
        <context>AGTATAACTT[C/T]CTGAAAAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAACTGAATGTCATTTCTGCAATTTTTGAGAATATTTCGCAGTATAACTT</left_flank>
        <right_flank>CTGAAAAATTATTAATTAATCCGCTGGGGAGCTAACCATTCTGACAATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTGTTGATAACCAGCGGAAACCAATCGAAGAAATAAAACAAGAAATCGAAGAAATAGAAGGTCAACCAGAGCAGCCGGATCCTTTTTATATAAAGCCAGAACCAGAGGCACAACGAAAGCGACATCAAAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCCGGAATGTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAAAATGACAAGCATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTTTTTATACATGATACTTTTTTGAATTTTCAAAAAAACAATATTCCAAAACATAAATAAAATAACTAGAAAATAACTGAATGTCATTTCTGCAATTTTTGAGAATATTTCGCAGTATAACTTCCTGAAAAATTATTAATTAATCCGCTGGGGAGCTAACCATTCTGACAATCTAATTGAACTTCAACTTTTTTATTCCTTTCAAAACTGCTGCTTTCTCACTCATCCAAAGGTTTGTTGGAGGTTGTATATTCAACCACACATGTTCTCATCTTTTTTCTGGTCCAAGTCTTTTGTGCGTGTCTGTTTCTCTTCCTTCACCAGGAGATAAAACCGAGCATTTTTGATCTCTAATTTGCTTTAGCTTTTCCAGTGGAAAAAAAGAGTAAAAAAAACTAAAAACAGGAAAATTTTCATATACAAATCAGCTCAATAAAATGGTATTGTATTGAAAAAATATACTGAAAATCAGTCAAAGTGGGAGAAAAACATAAAAGAAAGACTGAAAATTGATTTGAGATTGTTAATAATATGTTAAAGGAAAGTTGAAGGAAAAGTAGGTCAAACGAGAAATCGAAAATTTTGAAGATTGTCATCAAATCAACCATTGTTTCTTAGTTCTGC</canonical>
            <polymorphic>AACTGTTGATAACCAGCGGAAACCAATCGAAGAAATAAAACAAGAAATCGAAGAAATAGAAGGTCAACCAGAGCAGCCGGATCCTTTTTATATAAAGCCAGAACCAGAGGCACAACGAAAGCGACATCAAAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCCGGAATGTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAAAATGACAAGCATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTTTTTATACATGATACTTTTTTGAATTTTCAAAAAAACAATATTCCAAAACATAAATAAAATAACTAGAAAATAACTGAATGTCATTTCTGCAATTTTTGAGAATATTTCGCAGTATAACTTYCTGAAAAATTATTAATTAATCCGCTGGGGAGCTAACCATTCTGACAATCTAATTGAACTTCAACTTTTTTATTCCTTTCAAAACTGCTGCTTTCTCACTCATCCAAAGGTTTGTTGGAGGTTGTATATTCAACCACACATGTTCTCATCTTTTTTCTGGTCCAAGTCTTTTGTGCGTGTCTGTTTCTCTTCCTTCACCAGGAGATAAAACCGAGCATTTTTGATCTCTAATTTGCTTTAGCTTTTCCAGTGGAAAAAAAGAGTAAAAAAAACTAAAAACAGGAAAATTTTCATATACAAATCAGCTCAATAAAATGGTATTGTATTGAAAAAATATACTGAAAATCAGTCAAAGTGGGAGAAAAACATAAAAGAAAGACTGAAAATTGATTTGAGATTGTTAATAATATGTTAAAGGAAAGTTGAAGGAAAAGTAGGTCAAACGAGAAATCGAAAATTTTGAAGATTGTCATCAAATCAACCATTGTTTCTTAGTTCTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>500 261 239</canonical_bands>
                <polymorphic_bands>739 261</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCTACGAAGAAATTGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCAATTAGATTGTCAGAATGGT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>GTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTTTTTATACATGATACTTTTTTGAATTTTCAAAAAAACAATATTCCAAAACATAAATAAAATAACTAGAAAATAACTGAATGTCATTTCTGCAATTTTTGAGAATATTTCGCAGTATAACTTCCTGAAAAATTATTAATTAATCCGCTGGGGAGCTAACCATTCTGACAATCTAATTGAA</canonical_amplicon>
		<polymorphic_amplicon>GTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTTTTTATACATGATACTTTTTTGAATTTTCAAAAAAACAATATTCCAAAACATAAATAAAATAACTAGAAAATAACTGAATGTCATTTCTGCAATTTTTGAGAATATTTCGCAGTATAACTTYCTGAAAAATTATTAATTAATCCGCTGGGGAGCTAACCATTCTGACAATCTAATTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12375</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>671768</contig_pos>
        <strand>+</strand>
        <context>TATGTTTTTC[A/G]AACTGATTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTCGTACACCAGTAATGCCATTTTTTGAATCTTTTTCATATGTTTTTC</left_flank>
        <right_flank>AACTGATTTTGTTTCCATTTGGCGATCCTTTTAATAGTCAATTCGAAGCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTGGCTTGCTCCAGCGCCTTGATGCGATCAATGAGTGTGTGATATGTTTGGCGAATCATACGTTTTGAGGTGCAAGAATAAGAAGACACTGTAAAAAAGAATACCTTACAGTTTTAAAAATTTACTTACGAATTCCGGTATTTTTTCTTGTTCCTCTTTCGTTTGAGCCAACAACCATATTTACCATTTCTTGTCCTTCCTCTTCGTCTAACTCTTCATCAGCATAGTTTGGATTCGTTTCCAATTTGGACTGGATCACATGATCTACTAAAATACCATAAGCCCATTCTTTCATTTCTCCAAAGAAACCAATTGTCTCTTCGCCTGTATGAGTTGCAGCGTATTCCATTAGGTTAGCTGGAGAAGTGATTTTAAAATAATTTCGATAGATTTAGACTCACGATTTATGCAAATATCAAGATGTGAGGCGTCCTCAACTAATAGATCCTTCTCGTACACCAGTAATGCCATTTTTTGAATCTTTTTCATATGTTTTTCGAACTGATTTTGTTTCCATTTGGCGATCCTTTTAATAGTCAATTCGAAGCACATGGAAATAAGGCACATTCCATTCAGAATAAGCGACAAATTGAATGGAATCATGTTTTGGTTTTGGAAAATCAAATCACCATATCCTATTGTTCTGAAAAAGGCAATTAAATTAGAAGCAAAAAAACTTTGGAAACTAACGAAATGGTGACGATGAAAAAATATGCAGAAGTTGCATAAGTCCAACCTTCCAAAACAGAAAAGAATGCCGATGTGAAACAGATCCAAATAATCAGCATCATTACAGCGATTCTGATCGAGAAAGGGTCCTCTGAAGCTTCGGAGTTGGCCATCTTGAAATGTGCAAAACTCTCAATTCAGACCAATTTCTAACTGGCACAAAATTCGGAGGATACAACAATTCGGGGGTACAAGGGAAGTACAAAGTGATTTAGGGATACAAAAGCCTTCATTCGTGGGTACACAACATGGATTTTCGCAAGGATTTTT</canonical>
            <polymorphic>CTTGGCTTGCTCCAGCGCCTTGATGCGATCAATGAGTGTGTGATATGTTTGGCGAATCATACGTTTTGAGGTGCAAGAATAAGAAGACACTGTAAAAAAGAATACCTTACAGTTTTAAAAATTTACTTACGAATTCCGGTATTTTTTCTTGTTCCTCTTTCGTTTGAGCCAACAACCATATTTACCATTTCTTGTCCTTCCTCTTCGTCTAACTCTTCATCAGCATAGTTTGGATTCGTTTCCAATTTGGACTGGATCACATGATCTACTAAAATACCATAAGCCCATTCTTTCATTTCTCCAAAGAAACCAATTGTCTCTTCGCCTGTATGAGTTGCAGCGTATTCCATTAGGTTAGCTGGAGAAGTGATTTTAAAATAATTTCGATAGATTTAGACTCACGATTTATGCAAATATCAAGATGTGAGGCGTCCTCAACTAATAGATCCTTCTCGTACACCAGTAATGCCATTTTTTGAATCTTTTTCATATGTTTTTCRAACTGATTTTGTTTCCATTTGGCGATCCTTTTAATAGTCAATTCGAAGCACATGGAAATAAGGCACATTCCATTCAGAATAAGCGACAAATTGAATGGAATCATGTTTTGGTTTTGGAAAATCAAATCACCATATCCTATTGTTCTGAAAAAGGCAATTAAATTAGAAGCAAAAAAACTTTGGAAACTAACGAAATGGTGACGATGAAAAAATATGCAGAAGTTGCATAAGTCCAACCTTCCAAAACAGAAAAGAATGCCGATGTGAAACAGATCCAAATAATCAGCATCATTACAGCGATTCTGATCGAGAAAGGGTCCTCTGAAGCTTCGGAGTTGGCCATCTTGAAATGTGCAAAACTCTCAATTCAGACCAATTTCTAACTGGCACAAAATTCGGAGGATACAACAATTCGGGGGTACAAGGGAAGTACAAAGTGATTTAGGGATACAAAAGCCTTCATTCGTGGGTACACAACATGGATTTTCGCAAGGATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>498 457 45</canonical_bands>
                <polymorphic_bands>543 457</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>385 264 192 114 45</canonical_bands>
                <polymorphic_bands>385 264 192 159</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTATGCAAATATCAAGATGTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCAGAACAATAGGATATGG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTATGCAAATATCAAGATGTGAGGCGTCCTCAACTAATAGATCCTTCTCGTACACCAGTAATGCCATTTTTTGAATCTTTTTCATATGTTTTTCGAACTGATTTTGTTTCCATTTGGCGATCCTTTTAATAGTCAATTCGAAGCACATGGAAATAAGGCACATTCCATTCAGAATAAGCGACAAATTGAATGGAATCATGTTTTGGTTTTGGAAAATCAAATCACCATATCCTATTGTTCTGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTATGCAAATATCAAGATGTGAGGCGTCCTCAACTAATAGATCCTTCTCGTACACCAGTAATGCCATTTTTTGAATCTTTTTCATATGTTTTTCRAACTGATTTTGTTTCCATTTGGCGATCCTTTTAATAGTCAATTCGAAGCACATGGAAATAAGGCACATTCCATTCAGAATAAGCGACAAATTGAATGGAATCATGTTTTGGTTTTGGAAAATCAAATCACCATATCCTATTGTTCTGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12376</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>671705</contig_pos>
        <strand>+</strand>
        <context>AGGCGTCCTC[A/C]ACTAATAGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATAGATTTAGACTCACGATTTATGCAAATATCAAGATGTGAGGCGTCCTC</left_flank>
        <right_flank>ACTAATAGATCCTTCTCGTACACCAGTAATGCCATTTTTTGAATCTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGACTTTTTTGTTCTCCAAAAATTGGATAAACATTATTGAGTCCATGTCATTTTTCCTTGGCTTGGCTTGCTCCAGCGCCTTGATGCGATCAATGAGTGTGTGATATGTTTGGCGAATCATACGTTTTGAGGTGCAAGAATAAGAAGACACTGTAAAAAAGAATACCTTACAGTTTTAAAAATTTACTTACGAATTCCGGTATTTTTTCTTGTTCCTCTTTCGTTTGAGCCAACAACCATATTTACCATTTCTTGTCCTTCCTCTTCGTCTAACTCTTCATCAGCATAGTTTGGATTCGTTTCCAATTTGGACTGGATCACATGATCTACTAAAATACCATAAGCCCATTCTTTCATTTCTCCAAAGAAACCAATTGTCTCTTCGCCTGTATGAGTTGCAGCGTATTCCATTAGGTTAGCTGGAGAAGTGATTTTAAAATAATTTCGATAGATTTAGACTCACGATTTATGCAAATATCAAGATGTGAGGCGTCCTCAACTAATAGATCCTTCTCGTACACCAGTAATGCCATTTTTTGAATCTTTTTCATATGTTTTTCGAACTGATTTTGTTTCCATTTGGCGATCCTTTTAATAGTCAATTCGAAGCACATGGAAATAAGGCACATTCCATTCAGAATAAGCGACAAATTGAATGGAATCATGTTTTGGTTTTGGAAAATCAAATCACCATATCCTATTGTTCTGAAAAAGGCAATTAAATTAGAAGCAAAAAAACTTTGGAAACTAACGAAATGGTGACGATGAAAAAATATGCAGAAGTTGCATAAGTCCAACCTTCCAAAACAGAAAAGAATGCCGATGTGAAACAGATCCAAATAATCAGCATCATTACAGCGATTCTGATCGAGAAAGGGTCCTCTGAAGCTTCGGAGTTGGCCATCTTGAAATGTGCAAAACTCTCAATTCAGACCAATTTCTAACTGGCACAAAATTCGGAGGATACAACAATTCGGGGGTACAAGGGAAGTACAAAG</canonical>
            <polymorphic>GACGACTTTTTTGTTCTCCAAAAATTGGATAAACATTATTGAGTCCATGTCATTTTTCCTTGGCTTGGCTTGCTCCAGCGCCTTGATGCGATCAATGAGTGTGTGATATGTTTGGCGAATCATACGTTTTGAGGTGCAAGAATAAGAAGACACTGTAAAAAAGAATACCTTACAGTTTTAAAAATTTACTTACGAATTCCGGTATTTTTTCTTGTTCCTCTTTCGTTTGAGCCAACAACCATATTTACCATTTCTTGTCCTTCCTCTTCGTCTAACTCTTCATCAGCATAGTTTGGATTCGTTTCCAATTTGGACTGGATCACATGATCTACTAAAATACCATAAGCCCATTCTTTCATTTCTCCAAAGAAACCAATTGTCTCTTCGCCTGTATGAGTTGCAGCGTATTCCATTAGGTTAGCTGGAGAAGTGATTTTAAAATAATTTCGATAGATTTAGACTCACGATTTATGCAAATATCAAGATGTGAGGCGTCCTCMACTAATAGATCCTTCTCGTACACCAGTAATGCCATTTTTTGAATCTTTTTCATATGTTTTTCGAACTGATTTTGTTTCCATTTGGCGATCCTTTTAATAGTCAATTCGAAGCACATGGAAATAAGGCACATTCCATTCAGAATAAGCGACAAATTGAATGGAATCATGTTTTGGTTTTGGAAAATCAAATCACCATATCCTATTGTTCTGAAAAAGGCAATTAAATTAGAAGCAAAAAAACTTTGGAAACTAACGAAATGGTGACGATGAAAAAATATGCAGAAGTTGCATAAGTCCAACCTTCCAAAACAGAAAAGAATGCCGATGTGAAACAGATCCAAATAATCAGCATCATTACAGCGATTCTGATCGAGAAAGGGTCCTCTGAAGCTTCGGAGTTGGCCATCTTGAAATGTGCAAAACTCTCAATTCAGACCAATTTCTAACTGGCACAAAATTCGGAGGATACAACAATTCGGGGGTACAAGGGAAGTACAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTAGGTTAGCTGGAGAAGTGAT</pcr_primer_p1>
		<pcr_primer_p2>CATTCAATTTGTCGCTTATTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTAGGTTAGCTGGAGAAGTGATTTTAAAATAATTTCGATAGATTTAGACTCACGATTTATGCAAATATCAAGATGTGAGGCGTCCTCAACTAATAGATCCTTCTCGTACACCAGTAATGCCATTTTTTGAATCTTTTTCATATGTTTTTCGAACTGATTTTGTTTCCATTTGGCGATCCTTTTAATAGTCAATTCGAAGCACATGGAAATAAGGCACATTCCATTCAGAATAAGCGACAAATTGAATG</canonical_amplicon>
		<polymorphic_amplicon>ATTAGGTTAGCTGGAGAAGTGATTTTAAAATAATTTCGATAGATTTAGACTCACGATTTATGCAAATATCAAGATGTGAGGCGTCCTCMACTAATAGATCCTTCTCGTACACCAGTAATGCCATTTTTTGAATCTTTTTCATATGTTTTTCGAACTGATTTTGTTTCCATTTGGCGATCCTTTTAATAGTCAATTCGAAGCACATGGAAATAAGGCACATTCCATTCAGAATAAGCGACAAATTGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12377</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>671651</contig_pos>
        <strand>+</strand>
        <context>TTAAAATAAT[C/T]TCGATAGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTTGCAGCGTATTCCATTAGGTTAGCTGGAGAAGTGATTTTAAAATAAT</left_flank>
        <right_flank>TCGATAGATTTAGACTCACGATTTATGCAAATATCAAGATGTGAGGCGTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTTGACATGAAGTTGTAGTCTGATTTGGATGCTTGAATAGTTCCACAAGTTTGACGACTTTTTTGTTCTCCAAAAATTGGATAAACATTATTGAGTCCATGTCATTTTTCCTTGGCTTGGCTTGCTCCAGCGCCTTGATGCGATCAATGAGTGTGTGATATGTTTGGCGAATCATACGTTTTGAGGTGCAAGAATAAGAAGACACTGTAAAAAAGAATACCTTACAGTTTTAAAAATTTACTTACGAATTCCGGTATTTTTTCTTGTTCCTCTTTCGTTTGAGCCAACAACCATATTTACCATTTCTTGTCCTTCCTCTTCGTCTAACTCTTCATCAGCATAGTTTGGATTCGTTTCCAATTTGGACTGGATCACATGATCTACTAAAATACCATAAGCCCATTCTTTCATTTCTCCAAAGAAACCAATTGTCTCTTCGCCTGTATGAGTTGCAGCGTATTCCATTAGGTTAGCTGGAGAAGTGATTTTAAAATAATTTCGATAGATTTAGACTCACGATTTATGCAAATATCAAGATGTGAGGCGTCCTCAACTAATAGATCCTTCTCGTACACCAGTAATGCCATTTTTTGAATCTTTTTCATATGTTTTTCGAACTGATTTTGTTTCCATTTGGCGATCCTTTTAATAGTCAATTCGAAGCACATGGAAATAAGGCACATTCCATTCAGAATAAGCGACAAATTGAATGGAATCATGTTTTGGTTTTGGAAAATCAAATCACCATATCCTATTGTTCTGAAAAAGGCAATTAAATTAGAAGCAAAAAAACTTTGGAAACTAACGAAATGGTGACGATGAAAAAATATGCAGAAGTTGCATAAGTCCAACCTTCCAAAACAGAAAAGAATGCCGATGTGAAACAGATCCAAATAATCAGCATCATTACAGCGATTCTGATCGAGAAAGGGTCCTCTGAAGCTTCGGAGTTGGCCATCTTGAAATGTGCAAAACTCTCAATTCAGACCAATTTCTAA</canonical>
            <polymorphic>GGTTTGACATGAAGTTGTAGTCTGATTTGGATGCTTGAATAGTTCCACAAGTTTGACGACTTTTTTGTTCTCCAAAAATTGGATAAACATTATTGAGTCCATGTCATTTTTCCTTGGCTTGGCTTGCTCCAGCGCCTTGATGCGATCAATGAGTGTGTGATATGTTTGGCGAATCATACGTTTTGAGGTGCAAGAATAAGAAGACACTGTAAAAAAGAATACCTTACAGTTTTAAAAATTTACTTACGAATTCCGGTATTTTTTCTTGTTCCTCTTTCGTTTGAGCCAACAACCATATTTACCATTTCTTGTCCTTCCTCTTCGTCTAACTCTTCATCAGCATAGTTTGGATTCGTTTCCAATTTGGACTGGATCACATGATCTACTAAAATACCATAAGCCCATTCTTTCATTTCTCCAAAGAAACCAATTGTCTCTTCGCCTGTATGAGTTGCAGCGTATTCCATTAGGTTAGCTGGAGAAGTGATTTTAAAATAATYTCGATAGATTTAGACTCACGATTTATGCAAATATCAAGATGTGAGGCGTCCTCAACTAATAGATCCTTCTCGTACACCAGTAATGCCATTTTTTGAATCTTTTTCATATGTTTTTCGAACTGATTTTGTTTCCATTTGGCGATCCTTTTAATAGTCAATTCGAAGCACATGGAAATAAGGCACATTCCATTCAGAATAAGCGACAAATTGAATGGAATCATGTTTTGGTTTTGGAAAATCAAATCACCATATCCTATTGTTCTGAAAAAGGCAATTAAATTAGAAGCAAAAAAACTTTGGAAACTAACGAAATGGTGACGATGAAAAAATATGCAGAAGTTGCATAAGTCCAACCTTCCAAAACAGAAAAGAATGCCGATGTGAAACAGATCCAAATAATCAGCATCATTACAGCGATTCTGATCGAGAAAGGGTCCTCTGAAGCTTCGGAGTTGGCCATCTTGAAATGTGCAAAACTCTCAATTCAGACCAATTTCTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>204 160 160 112 76 68 68 67 49 12 10 9 5</canonical_bands>
                <polymorphic_bands>228 204 160 112 76 68 67 49 12 10 9 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATCAGCATAGTTTGGATTC</pcr_primer_p1>
		<pcr_primer_p2>TACTGGTGTACGAGAAGGATCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCATCAGCATAGTTTGGATTCGTTTCCAATTTGGACTGGATCACATGATCTACTAAAATACCATAAGCCCATTCTTTCATTTCTCCAAAGAAACCAATTGTCTCTTCGCCTGTATGAGTTGCAGCGTATTCCATTAGGTTAGCTGGAGAAGTGATTTTAAAATAATTTCGATAGATTTAGACTCACGATTTATGCAAATATCAAGATGTGAGGCGTCCTCAACTAATAGATCCTTCTCGTACACCAGTA</canonical_amplicon>
		<polymorphic_amplicon>TCATCAGCATAGTTTGGATTCGTTTCCAATTTGGACTGGATCACATGATCTACTAAAATACCATAAGCCCATTCTTTCATTTCTCCAAAGAAACCAATTGTCTCTTCGCCTGTATGAGTTGCAGCGTATTCCATTAGGTTAGCTGGAGAAGTGATTTTAAAATAATYTCGATAGATTTAGACTCACGATTTATGCAAATATCAAGATGTGAGGCGTCCTCAACTAATAGATCCTTCTCGTACACCAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12385</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>682708</contig_pos>
        <strand>+</strand>
        <context>AGTAGCCTCC[C/T]CCACTCATAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCATTTTTGGCCGCAAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCC</left_flank>
        <right_flank>CCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTTGTTATTATCACTTACTACTTTTTTACATGTTTCTATCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCTACATGCATATATAAAAAGAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGTTTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTCGGTTTACTTCGAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCTTTTTTTCCTGGCGCCTCCATTTTTGGCCGCAAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCCCCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAGTTTTCGTGTTCTCCCCAACAACTGAATGGTGCGCATTTGGCGTGAATTAATCTAGTTTTTACTTGTTCGTTAGCTTGGCTCCTCTGTATTTCTTGAAAAGTCACGTCTATTTATTTTTAATTTCCAAGCTATTCAAAAATGTGAGGAAAGAGTAATTGAGAAATGAAAAATTGCAACTTCATTTTTTTTATTATAAGGAAAATATTTTCCATAAGTGCAAAATCACGGACTGGCTTGCCATTTGTGCAGATGCTGATTTTTTTGAACTTTTTTTTAAATTTTTGAAAAATTTTTGAAAAATTTTTTGAAACACTGTCCTCAAAACCTAAATTCGTGATATTATTTCAAAATTGATATTTTCTTGAAGAGCTAAAAAAAACCTATTTTTCTACTCCGTTCTACTTTGTTAATTTTGTTAAATAATGGCACTTTTTTTCTTTAAAAAAAAAT</canonical>
            <polymorphic>AACTTGTTATTATCACTTACTACTTTTTTACATGTTTCTATCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCTACATGCATATATAAAAAGAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGTTTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTCGGTTTACTTCGAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCTTTTTTTCCTGGCGCCTCCATTTTTGGCCGCAAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCYCCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAGTTTTCGTGTTCTCCCCAACAACTGAATGGTGCGCATTTGGCGTGAATTAATCTAGTTTTTACTTGTTCGTTAGCTTGGCTCCTCTGTATTTCTTGAAAAGTCACGTCTATTTATTTTTAATTTCCAAGCTATTCAAAAATGTGAGGAAAGAGTAATTGAGAAATGAAAAATTGCAACTTCATTTTTTTTATTATAAGGAAAATATTTTCCATAAGTGCAAAATCACGGACTGGCTTGCCATTTGTGCAGATGCTGATTTTTTTGAACTTTTTTTTAAATTTTTGAAAAATTTTTGAAAAATTTTTTGAAACACTGTCCTCAAAACCTAAATTCGTGATATTATTTCAAAATTGATATTTTCTTGAAGAGCTAAAAAAAACCTATTTTTCTACTCCGTTCTACTTTGTTAATTTTGTTAAATAATGGCACTTTTTTTCTTTAAAAAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGGTCTGAATGTTAGTCATC</pcr_primer_p1>
		<pcr_primer_p2>GAACACGAAAACTTTTAAACTGA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCTTTTTTTCCTGGCGCCTCCATTTTTGGCCGCAAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCCCCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAGTTTTCGTGTTC</canonical_amplicon>
		<polymorphic_amplicon>GGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCTTTTTTTCCTGGCGCCTCCATTTTTGGCCGCAAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCYCCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAGTTTTCGTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12386</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>682673</contig_pos>
        <strand></strand>
        <context>TTTTGGCCGC[A/G]AACTGTCTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACAGAGTGATTCTTCTTCTTTTTTTCCTGGCGCCTCCATTTTTGGCCGC</left_flank>
        <right_flank>AACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCCCCACTCATACTGCTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCCTCGAGATTCTGAAAATCTCTCCTTATCAACAACTTGTTATTATCACTTACTACTTTTTTACATGTTTCTATCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCTACATGCATATATAAAAAGAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGTTTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTCGGTTTACTTCGAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCTTTTTTTCCTGGCGCCTCCATTTTTGGCCGCAAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCCCCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAGTTTTCGTGTTCTCCCCAACAACTGAATGGTGCGCATTTGGCGTGAATTAATCTAGTTTTTACTTGTTCGTTAGCTTGGCTCCTCTGTATTTCTTGAAAAGTCACGTCTATTTATTTTTAATTTCCAAGCTATTCAAAAATGTGAGGAAAGAGTAATTGAGAAATGAAAAATTGCAACTTCATTTTTTTTATTATAAGGAAAATATTTTCCATAAGTGCAAAATCACGGACTGGCTTGCCATTTGTGCAGATGCTGATTTTTTTGAACTTTTTTTTAAATTTTTGAAAAATTTTTGAAAAATTTTTTGAAACACTGTCCTCAAAACCTAAATTCGTGATATTATTTCAAAATTGATATTTTCTTGAAGAGCTAAAAAAAACCTATTTTTCTACTCCGTTCTACTTTGTTAATTTTG</canonical>
            <polymorphic>TTCCCTCGAGATTCTGAAAATCTCTCCTTATCAACAACTTGTTATTATCACTTACTACTTTTTTACATGTTTCTATCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCTACATGCATATATAAAAAGAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGTTTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTCGGTTTACTTCGAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCTTTTTTTCCTGGCGCCTCCATTTTTGGCCGCRAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCCCCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAGTTTTCGTGTTCTCCCCAACAACTGAATGGTGCGCATTTGGCGTGAATTAATCTAGTTTTTACTTGTTCGTTAGCTTGGCTCCTCTGTATTTCTTGAAAAGTCACGTCTATTTATTTTTAATTTCCAAGCTATTCAAAAATGTGAGGAAAGAGTAATTGAGAAATGAAAAATTGCAACTTCATTTTTTTTATTATAAGGAAAATATTTTCCATAAGTGCAAAATCACGGACTGGCTTGCCATTTGTGCAGATGCTGATTTTTTTGAACTTTTTTTTAAATTTTTGAAAAATTTTTGAAAAATTTTTTGAAACACTGTCCTCAAAACCTAAATTCGTGATATTATTTCAAAATTGATATTTTCTTGAAGAGCTAAAAAAAACCTATTTTTCTACTCCGTTCTACTTTGTTAATTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGGTCTGAATGTTAGTCATC</pcr_primer_p1>
		<pcr_primer_p2>GAACACGAAAACTTTTAAACTGA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCTTTTTTTCCTGGCGCCTCCATTTTTGGCCGCAAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCCCCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAGTTTTCGTGTTC</canonical_amplicon>
		<polymorphic_amplicon>GGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCTTTTTTTCCTGGCGCCTCCATTTTTGGCCGCRAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCCCCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAGTTTTCGTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12387</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>682603</contig_pos>
        <strand>+</strand>
        <context>AGAGGTCTTC[C/T]TTTAGTGTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTC</left_flank>
        <right_flank>TTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCTTTTTTTCCTGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCCTTTTTTCTCCCTTTCTCTTTTTCTTCTGTTCTCTATATTTTCCTCAATATCACACTTACTTCTTTTTTCCCTCGAGATTCTGAAAATCTCTCCTTATCAACAACTTGTTATTATCACTTACTACTTTTTTACATGTTTCTATCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCTACATGCATATATAAAAAGAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGTTTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTCGGTTTACTTCGAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCTTTTTTTCCTGGCGCCTCCATTTTTGGCCGCAAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCCCCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAGTTTTCGTGTTCTCCCCAACAACTGAATGGTGCGCATTTGGCGTGAATTAATCTAGTTTTTACTTGTTCGTTAGCTTGGCTCCTCTGTATTTCTTGAAAAGTCACGTCTATTTATTTTTAATTTCCAAGCTATTCAAAAATGTGAGGAAAGAGTAATTGAGAAATGAAAAATTGCAACTTCATTTTTTTTATTATAAGGAAAATATTTTCCATAAGTGCAAAATCACGGACTGGCTTGCCATTTGTGCAGATGCTGATTTTTTTGAACTTTTTTTTAAATTTTTGAAAAATTTTTGAAAAATTTTTTGAAACACTGTCCTCAAAACCTAAATTCGTGATATTATTT</canonical>
            <polymorphic>TCCCTTTTTTCTCCCTTTCTCTTTTTCTTCTGTTCTCTATATTTTCCTCAATATCACACTTACTTCTTTTTTCCCTCGAGATTCTGAAAATCTCTCCTTATCAACAACTTGTTATTATCACTTACTACTTTTTTACATGTTTCTATCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCTACATGCATATATAAAAAGAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGTTTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTCGGTTTACTTCGAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCYTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCTTTTTTTCCTGGCGCCTCCATTTTTGGCCGCAAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCCCCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAGTTTTCGTGTTCTCCCCAACAACTGAATGGTGCGCATTTGGCGTGAATTAATCTAGTTTTTACTTGTTCGTTAGCTTGGCTCCTCTGTATTTCTTGAAAAGTCACGTCTATTTATTTTTAATTTCCAAGCTATTCAAAAATGTGAGGAAAGAGTAATTGAGAAATGAAAAATTGCAACTTCATTTTTTTTATTATAAGGAAAATATTTTCCATAAGTGCAAAATCACGGACTGGCTTGCCATTTGTGCAGATGCTGATTTTTTTGAACTTTTTTTTAAATTTTTGAAAAATTTTTGAAAAATTTTTTGAAACACTGTCCTCAAAACCTAAATTCGTGATATTATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGGTCTGAATGTTAGTCATC</pcr_primer_p1>
		<pcr_primer_p2>GAACACGAAAACTTTTAAACTGA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCTTTTTTTCCTGGCGCCTCCATTTTTGGCCGCAAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCCCCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAGTTTTCGTGTTC</canonical_amplicon>
		<polymorphic_amplicon>GGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCYTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCTTTTTTTCCTGGCGCCTCCATTTTTGGCCGCAAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCCCCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAGTTTTCGTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12388</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>682524</contig_pos>
        <strand>+</strand>
        <context>AAAAGTGCAC[A/T]TGGTGGTCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAATTAGTCTTGAGAAATATTATTTCCTCGGTTTACTTCGAAAAGTGCAC</left_flank>
        <right_flank>TGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTCAAGCCTCAAAATGTGTATAAATTTTCAAGTACCCAAGAATGTTTTGAGGCTCATTAGAAAACCGAAATCCAACCTCCCTTTTTTCTCCCTTTCTCTTTTTCTTCTGTTCTCTATATTTTCCTCAATATCACACTTACTTCTTTTTTCCCTCGAGATTCTGAAAATCTCTCCTTATCAACAACTTGTTATTATCACTTACTACTTTTTTACATGTTTCTATCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCTACATGCATATATAAAAAGAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGTTTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTCGGTTTACTTCGAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCTTTTTTTCCTGGCGCCTCCATTTTTGGCCGCAAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCCCCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAGTTTTCGTGTTCTCCCCAACAACTGAATGGTGCGCATTTGGCGTGAATTAATCTAGTTTTTACTTGTTCGTTAGCTTGGCTCCTCTGTATTTCTTGAAAAGTCACGTCTATTTATTTTTAATTTCCAAGCTATTCAAAAATGTGAGGAAAGAGTAATTGAGAAATGAAAAATTGCAACTTCATTTTTTTTATTATAAGGAAAATATTTTCCATAAGTGCAAAATCACGGACTGGCTTGCCATTTGTGCAGATGCTGATTTTTTTGAA</canonical>
            <polymorphic>TTCTCAAGCCTCAAAATGTGTATAAATTTTCAAGTACCCAAGAATGTTTTGAGGCTCATTAGAAAACCGAAATCCAACCTCCCTTTTTTCTCCCTTTCTCTTTTTCTTCTGTTCTCTATATTTTCCTCAATATCACACTTACTTCTTTTTTCCCTCGAGATTCTGAAAATCTCTCCTTATCAACAACTTGTTATTATCACTTACTACTTTTTTACATGTTTCTATCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCTACATGCATATATAAAAAGAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGTTTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTCGGTTTACTTCGAAAAGTGCACWTGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCTTTTTTTCCTGGCGCCTCCATTTTTGGCCGCAAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCCCCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAGTTTTCGTGTTCTCCCCAACAACTGAATGGTGCGCATTTGGCGTGAATTAATCTAGTTTTTACTTGTTCGTTAGCTTGGCTCCTCTGTATTTCTTGAAAAGTCACGTCTATTTATTTTTAATTTCCAAGCTATTCAAAAATGTGAGGAAAGAGTAATTGAGAAATGAAAAATTGCAACTTCATTTTTTTTATTATAAGGAAAATATTTTCCATAAGTGCAAAATCACGGACTGGCTTGCCATTTGTGCAGATGCTGATTTTTTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 215 135 61 57 31</canonical_bands>
                <polymorphic_bands>558 215 135 61 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTCTACTTATTCACCCCTAGC</pcr_primer_p1>
		<pcr_primer_p2>GTTTGCTTTTCAGGACACTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTCGGTTTACTTCGAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAAC</canonical_amplicon>
		<polymorphic_amplicon>TCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTCGGTTTACTTCGAAAAGTGCACWTGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12389</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>682512</contig_pos>
        <strand>+</strand>
        <context>MGGKTTACTT[C/G]GAAAAGTGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTCGGTTTACTT</left_flank>
        <right_flank>GAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAGAAAACGTCTTCTCAAGCCTCAAAATGTGTATAAATTTTCAAGTACCCAAGAATGTTTTGAGGCTCATTAGAAAACCGAAATCCAACCTCCCTTTTTTCTCCCTTTCTCTTTTTCTTCTGTTCTCTATATTTTCCTCAATATCACACTTACTTCTTTTTTCCCTCGAGATTCTGAAAATCTCTCCTTATCAACAACTTGTTATTATCACTTACTACTTTTTTACATGTTTCTATCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCTACATGCATATATAAAAAGAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGTTTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTCGGTTTACTTCGAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCTTTTTTTCCTGGCGCCTCCATTTTTGGCCGCAAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCCCCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAGTTTTCGTGTTCTCCCCAACAACTGAATGGTGCGCATTTGGCGTGAATTAATCTAGTTTTTACTTGTTCGTTAGCTTGGCTCCTCTGTATTTCTTGAAAAGTCACGTCTATTTATTTTTAATTTCCAAGCTATTCAAAAATGTGAGGAAAGAGTAATTGAGAAATGAAAAATTGCAACTTCATTTTTTTTATTATAAGGAAAATATTTTCCATAAGTGCAAAATCACGGACTGGCTTGCCATTTGTGCAGATGCT</canonical>
            <polymorphic>GTAGAAAACGTCTTCTCAAGCCTCAAAATGTGTATAAATTTTCAAGTACCCAAGAATGTTTTGAGGCTCATTAGAAAACCGAAATCCAACCTCCCTTTTTTCTCCCTTTCTCTTTTTCTTCTGTTCTCTATATTTTCCTCAATATCACACTTACTTCTTTTTTCCCTCGAGATTCTGAAAATCTCTCCTTATCAACAACTTGTTATTATCACTTACTACTTTTTTACATGTTTCTATCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCTACATGCATATATAAAAAGAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGTTTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTCGGTTTACTTSGAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCTTTTTTTCCTGGCGCCTCCATTTTTGGCCGCAAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCCCCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAGTTTTCGTGTTCTCCCCAACAACTGAATGGTGCGCATTTGGCGTGAATTAATCTAGTTTTTACTTGTTCGTTAGCTTGGCTCCTCTGTATTTCTTGAAAAGTCACGTCTATTTATTTTTAATTTCCAAGCTATTCAAAAATGTGAGGAAAGAGTAATTGAGAAATGAAAAATTGCAACTTCATTTTTTTTATTATAAGGAAAATATTTTCCATAAGTGCAAAATCACGGACTGGCTTGCCATTTGTGCAGATGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 332 168</canonical_bands>
                <polymorphic_bands>832 168</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTCTACTTATTCACCCCTAGC</pcr_primer_p1>
		<pcr_primer_p2>GTTTGCTTTTCAGGACACTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTCGGTTTACTTCGAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAAC</canonical_amplicon>
		<polymorphic_amplicon>TCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTCGGTTTACTTSGAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12390</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>682505</contig_pos>
        <strand>+</strand>
        <context>ATTTCCTMGG[G/T]TTACTTSGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTCGG</left_flank>
        <right_flank>TTACTTCGAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTGTAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTGTAGTAGAAAACGTCTTCTCAAGCCTCAAAATGTGTATAAATTTTCAAGTACCCAAGAATGTTTTGAGGCTCATTAGAAAACCGAAATCCAACCTCCCTTTTTTCTCCCTTTCTCTTTTTCTTCTGTTCTCTATATTTTCCTCAATATCACACTTACTTCTTTTTTCCCTCGAGATTCTGAAAATCTCTCCTTATCAACAACTTGTTATTATCACTTACTACTTTTTTACATGTTTCTATCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCTACATGCATATATAAAAAGAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGTTTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTCGGTTTACTTCGAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCTTTTTTTCCTGGCGCCTCCATTTTTGGCCGCAAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCCCCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAGTTTTCGTGTTCTCCCCAACAACTGAATGGTGCGCATTTGGCGTGAATTAATCTAGTTTTTACTTGTTCGTTAGCTTGGCTCCTCTGTATTTCTTGAAAAGTCACGTCTATTTATTTTTAATTTCCAAGCTATTCAAAAATGTGAGGAAAGAGTAATTGAGAAATGAAAAATTGCAACTTCATTTTTTTTATTATAAGGAAAATATTTTCCATAAGTGCAAAATCACGGACTGGCTTGCCATTTGTGC</canonical>
            <polymorphic>ATGTGTAGTAGAAAACGTCTTCTCAAGCCTCAAAATGTGTATAAATTTTCAAGTACCCAAGAATGTTTTGAGGCTCATTAGAAAACCGAAATCCAACCTCCCTTTTTTCTCCCTTTCTCTTTTTCTTCTGTTCTCTATATTTTCCTCAATATCACACTTACTTCTTTTTTCCCTCGAGATTCTGAAAATCTCTCCTTATCAACAACTTGTTATTATCACTTACTACTTTTTTACATGTTTCTATCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCTACATGCATATATAAAAAGAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGTTTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTCGGKTTACTTCGAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCTTTTTTTCCTGGCGCCTCCATTTTTGGCCGCAAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCCCCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAGTTTTCGTGTTCTCCCCAACAACTGAATGGTGCGCATTTGGCGTGAATTAATCTAGTTTTTACTTGTTCGTTAGCTTGGCTCCTCTGTATTTCTTGAAAAGTCACGTCTATTTATTTTTAATTTCCAAGCTATTCAAAAATGTGAGGAAAGAGTAATTGAGAAATGAAAAATTGCAACTTCATTTTTTTTATTATAAGGAAAATATTTTCCATAAGTGCAAAATCACGGACTGGCTTGCCATTTGTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 485 14</canonical_bands>
                <polymorphic_bands>515 485</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTCTACTTATTCACCCCTAGC</pcr_primer_p1>
		<pcr_primer_p2>GTTTGCTTTTCAGGACACTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTCGGTTTACTTCGAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAAC</canonical_amplicon>
		<polymorphic_amplicon>TCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTCGGKTTACTTCGAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12391</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>682502</contig_pos>
        <strand>+</strand>
        <context>ATTATTTCCT[A/C]GGKTTACTTS</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCT</left_flank>
        <right_flank>GGTTTACTTCGAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCATGTGTAGTAGAAAACGTCTTCTCAAGCCTCAAAATGTGTATAAATTTTCAAGTACCCAAGAATGTTTTGAGGCTCATTAGAAAACCGAAATCCAACCTCCCTTTTTTCTCCCTTTCTCTTTTTCTTCTGTTCTCTATATTTTCCTCAATATCACACTTACTTCTTTTTTCCCTCGAGATTCTGAAAATCTCTCCTTATCAACAACTTGTTATTATCACTTACTACTTTTTTACATGTTTCTATCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCTACATGCATATATAAAAAGAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGTTTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTCGGTTTACTTCGAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCTTTTTTTCCTGGCGCCTCCATTTTTGGCCGCAAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCCCCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAGTTTTCGTGTTCTCCCCAACAACTGAATGGTGCGCATTTGGCGTGAATTAATCTAGTTTTTACTTGTTCGTTAGCTTGGCTCCTCTGTATTTCTTGAAAAGTCACGTCTATTTATTTTTAATTTCCAAGCTATTCAAAAATGTGAGGAAAGAGTAATTGAGAAATGAAAAATTGCAACTTCATTTTTTTTATTATAAGGAAAATATTTTCCATAAGTGCAAAATCACGGACTGGCTTGCCATTTG</canonical>
            <polymorphic>ATCATGTGTAGTAGAAAACGTCTTCTCAAGCCTCAAAATGTGTATAAATTTTCAAGTACCCAAGAATGTTTTGAGGCTCATTAGAAAACCGAAATCCAACCTCCCTTTTTTCTCCCTTTCTCTTTTTCTTCTGTTCTCTATATTTTCCTCAATATCACACTTACTTCTTTTTTCCCTCGAGATTCTGAAAATCTCTCCTTATCAACAACTTGTTATTATCACTTACTACTTTTTTACATGTTTCTATCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCTACATGCATATATAAAAAGAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGTTTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTMGGTTTACTTCGAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCTTTTTTTCCTGGCGCCTCCATTTTTGGCCGCAAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCCCCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAGTTTTCGTGTTCTCCCCAACAACTGAATGGTGCGCATTTGGCGTGAATTAATCTAGTTTTTACTTGTTCGTTAGCTTGGCTCCTCTGTATTTCTTGAAAAGTCACGTCTATTTATTTTTAATTTCCAAGCTATTCAAAAATGTGAGGAAAGAGTAATTGAGAAATGAAAAATTGCAACTTCATTTTTTTTATTATAAGGAAAATATTTTCCATAAGTGCAAAATCACGGACTGGCTTGCCATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTCTACTTATTCACCCCTAGC</pcr_primer_p1>
		<pcr_primer_p2>GTTTGCTTTTCAGGACACTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTCGGTTTACTTCGAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAAC</canonical_amplicon>
		<polymorphic_amplicon>TCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTMGGTTTACTTCGAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12392</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>682413</contig_pos>
        <strand>+</strand>
        <context>TATGCACGGG[C/T]TAATGAATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGG</left_flank>
        <right_flank>TAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAATTTTTCTAAAAATCTGGATTTACAAAGTCTTTTGCTATTTTTTCTTCATTTTTAAATTTTATAAATTTTTTAAATTTTATAAACATCATGTGTAGTAGAAAACGTCTTCTCAAGCCTCAAAATGTGTATAAATTTTCAAGTACCCAAGAATGTTTTGAGGCTCATTAGAAAACCGAAATCCAACCTCCCTTTTTTCTCCCTTTCTCTTTTTCTTCTGTTCTCTATATTTTCCTCAATATCACACTTACTTCTTTTTTCCCTCGAGATTCTGAAAATCTCTCCTTATCAACAACTTGTTATTATCACTTACTACTTTTTTACATGTTTCTATCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCTACATGCATATATAAAAAGAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGTTTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTCGGTTTACTTCGAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCTTTTTTTCCTGGCGCCTCCATTTTTGGCCGCAAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCCCCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAGTTTTCGTGTTCTCCCCAACAACTGAATGGTGCGCATTTGGCGTGAATTAATCTAGTTTTTACTTGTTCGTTAGCTTGGCTCCTCTGTATTTCTTGAAAAGTCACGTCTATTTATTTTTAATTTCCAAGCTATTCAAAAATGTGAGGAAAGAGTAA</canonical>
            <polymorphic>TAAAATTTTTCTAAAAATCTGGATTTACAAAGTCTTTTGCTATTTTTTCTTCATTTTTAAATTTTATAAATTTTTTAAATTTTATAAACATCATGTGTAGTAGAAAACGTCTTCTCAAGCCTCAAAATGTGTATAAATTTTCAAGTACCCAAGAATGTTTTGAGGCTCATTAGAAAACCGAAATCCAACCTCCCTTTTTTCTCCCTTTCTCTTTTTCTTCTGTTCTCTATATTTTCCTCAATATCACACTTACTTCTTTTTTCCCTCGAGATTCTGAAAATCTCTCCTTATCAACAACTTGTTATTATCACTTACTACTTTTTTACATGTTTCTATCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCTACATGCATATATAAAAAGAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGTTTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGGYTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTCGGTTTACTTCGAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCTTTTTTTCCTGGCGCCTCCATTTTTGGCCGCAAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCCCCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAGTTTTCGTGTTCTCCCCAACAACTGAATGGTGCGCATTTGGCGTGAATTAATCTAGTTTTTACTTGTTCGTTAGCTTGGCTCCTCTGTATTTCTTGAAAAGTCACGTCTATTTATTTTTAATTTCCAAGCTATTCAAAAATGTGAGGAAAGAGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>256 245 129 119 77 50 46 34 27 12 5</canonical_bands>
                <polymorphic_bands>333 245 129 119 50 46 34 27 12 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTTCTATCCGGTAATCCTAC</pcr_primer_p1>
		<pcr_primer_p2>TCTCAAGACTAATTAGAAACATGAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTTTCTATCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCTACATGCATATATAAAAAGAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGTTTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGA</canonical_amplicon>
		<polymorphic_amplicon>TGTTTCTATCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCTACATGCATATATAAAAAGAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGTTTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGGYTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12393</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>682358</contig_pos>
        <strand>+</strand>
        <context>CCTTTCTTCG[C/T]TTTCTACATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATAAAAAGAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCG</left_flank>
        <right_flank>TTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAGCCCATTGGCTCGTAATAGAGGAAATACGGTAGGCTAATTCTAGTCCATCCTAAAATTTTTCTAAAAATCTGGATTTACAAAGTCTTTTGCTATTTTTTCTTCATTTTTAAATTTTATAAATTTTTTAAATTTTATAAACATCATGTGTAGTAGAAAACGTCTTCTCAAGCCTCAAAATGTGTATAAATTTTCAAGTACCCAAGAATGTTTTGAGGCTCATTAGAAAACCGAAATCCAACCTCCCTTTTTTCTCCCTTTCTCTTTTTCTTCTGTTCTCTATATTTTCCTCAATATCACACTTACTTCTTTTTTCCCTCGAGATTCTGAAAATCTCTCCTTATCAACAACTTGTTATTATCACTTACTACTTTTTTACATGTTTCTATCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCTACATGCATATATAAAAAGAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGTTTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTCGGTTTACTTCGAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCTTTTTTTCCTGGCGCCTCCATTTTTGGCCGCAAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCCCCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAGTTTTCGTGTTCTCCCCAACAACTGAATGGTGCGCATTTGGCGTGAATTAATCTAGTTTTTACTTGTTCGTTAGCTTGGCTCCTCTGTATTTCTTGAAAAG</canonical>
            <polymorphic>AGAAGCCCATTGGCTCGTAATAGAGGAAATACGGTAGGCTAATTCTAGTCCATCCTAAAATTTTTCTAAAAATCTGGATTTACAAAGTCTTTTGCTATTTTTTCTTCATTTTTAAATTTTATAAATTTTTTAAATTTTATAAACATCATGTGTAGTAGAAAACGTCTTCTCAAGCCTCAAAATGTGTATAAATTTTCAAGTACCCAAGAATGTTTTGAGGCTCATTAGAAAACCGAAATCCAACCTCCCTTTTTTCTCCCTTTCTCTTTTTCTTCTGTTCTCTATATTTTCCTCAATATCACACTTACTTCTTTTTTCCCTCGAGATTCTGAAAATCTCTCCTTATCAACAACTTGTTATTATCACTTACTACTTTTTTACATGTTTCTATCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCTACATGCATATATAAAAAGAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGYTTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTCGGTTTACTTCGAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCTTTTTTTCCTGGCGCCTCCATTTTTGGCCGCAAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCCCCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAGTTTTCGTGTTCTCCCCAACAACTGAATGGTGCGCATTTGGCGTGAATTAATCTAGTTTTTACTTGTTCGTTAGCTTGGCTCCTCTGTATTTCTTGAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAATCTCTCCTTATCAACAA</pcr_primer_p1>
		<pcr_primer_p2>ATGTTTAGTGCCAAAAATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAAAATCTCTCCTTATCAACAACTTGTTATTATCACTTACTACTTTTTTACATGTTTCTATCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCTACATGCATATATAAAAAGAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGTTTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACAT</canonical_amplicon>
		<polymorphic_amplicon>TGAAAATCTCTCCTTATCAACAACTTGTTATTATCACTTACTACTTTTTTACATGTTTCTATCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCTACATGCATATATAAAAAGAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGYTTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12394</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>682316</contig_pos>
        <strand>+</strand>
        <context>TATATAAAAA[A/G]AAATGAGCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTTCTCAAGATCTCTTTTTCGTACATATCTACATGCATATATAAAAA</left_flank>
        <right_flank>AAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGTTTTCTACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAACAAACATTTTTTTTTGAAAATAAATTGTTTAAAAATAGAAGCCCATTGGCTCGTAATAGAGGAAATACGGTAGGCTAATTCTAGTCCATCCTAAAATTTTTCTAAAAATCTGGATTTACAAAGTCTTTTGCTATTTTTTCTTCATTTTTAAATTTTATAAATTTTTTAAATTTTATAAACATCATGTGTAGTAGAAAACGTCTTCTCAAGCCTCAAAATGTGTATAAATTTTCAAGTACCCAAGAATGTTTTGAGGCTCATTAGAAAACCGAAATCCAACCTCCCTTTTTTCTCCCTTTCTCTTTTTCTTCTGTTCTCTATATTTTCCTCAATATCACACTTACTTCTTTTTTCCCTCGAGATTCTGAAAATCTCTCCTTATCAACAACTTGTTATTATCACTTACTACTTTTTTACATGTTTCTATCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCTACATGCATATATAAAAAGAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGTTTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTCGGTTTACTTCGAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCTTTTTTTCCTGGCGCCTCCATTTTTGGCCGCAAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCCCCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAGTTTTCGTGTTCTCCCCAACAACTGAATGGTGCGCATTTGGCGTGAATTAATCTAGTTT</canonical>
            <polymorphic>TTTGAACAAACATTTTTTTTTGAAAATAAATTGTTTAAAAATAGAAGCCCATTGGCTCGTAATAGAGGAAATACGGTAGGCTAATTCTAGTCCATCCTAAAATTTTTCTAAAAATCTGGATTTACAAAGTCTTTTGCTATTTTTTCTTCATTTTTAAATTTTATAAATTTTTTAAATTTTATAAACATCATGTGTAGTAGAAAACGTCTTCTCAAGCCTCAAAATGTGTATAAATTTTCAAGTACCCAAGAATGTTTTGAGGCTCATTAGAAAACCGAAATCCAACCTCCCTTTTTTCTCCCTTTCTCTTTTTCTTCTGTTCTCTATATTTTCCTCAATATCACACTTACTTCTTTTTTCCCTCGAGATTCTGAAAATCTCTCCTTATCAACAACTTGTTATTATCACTTACTACTTTTTTACATGTTTCTATCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCTACATGCATATATAAAAARAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGTTTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTCGGTTTACTTCGAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCTTTTTTTCCTGGCGCCTCCATTTTTGGCCGCAAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCCCCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAGTTTTCGTGTTCTCCCCAACAACTGAATGGTGCGCATTTGGCGTGAATTAATCTAGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAATCTCTCCTTATCAACAA</pcr_primer_p1>
		<pcr_primer_p2>ATGTTTAGTGCCAAAAATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAAAATCTCTCCTTATCAACAACTTGTTATTATCACTTACTACTTTTTTACATGTTTCTATCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCTACATGCATATATAAAAAGAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGTTTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACAT</canonical_amplicon>
		<polymorphic_amplicon>TGAAAATCTCTCCTTATCAACAACTTGTTATTATCACTTACTACTTTTTTACATGTTTCTATCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCTACATGCATATATAAAAARAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGTTTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12395</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>682299</contig_pos>
        <strand>+</strand>
        <context>GTACATATCT[A/T]CATGCATATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCT</left_flank>
        <right_flank>CATGCATATATAAAAAGAAATGAGCTGCTGTATGAGCTCTTACCCTCTCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTCAATTTTGTGAATTTTTGAACAAACATTTTTTTTTGAAAATAAATTGTTTAAAAATAGAAGCCCATTGGCTCGTAATAGAGGAAATACGGTAGGCTAATTCTAGTCCATCCTAAAATTTTTCTAAAAATCTGGATTTACAAAGTCTTTTGCTATTTTTTCTTCATTTTTAAATTTTATAAATTTTTTAAATTTTATAAACATCATGTGTAGTAGAAAACGTCTTCTCAAGCCTCAAAATGTGTATAAATTTTCAAGTACCCAAGAATGTTTTGAGGCTCATTAGAAAACCGAAATCCAACCTCCCTTTTTTCTCCCTTTCTCTTTTTCTTCTGTTCTCTATATTTTCCTCAATATCACACTTACTTCTTTTTTCCCTCGAGATTCTGAAAATCTCTCCTTATCAACAACTTGTTATTATCACTTACTACTTTTTTACATGTTTCTATCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCTACATGCATATATAAAAAGAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGTTTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTCGGTTTACTTCGAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCTTTTTTTCCTGGCGCCTCCATTTTTGGCCGCAAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCCCCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAGTTTTCGTGTTCTCCCCAACAACTGAATGGTGCGCATTTGGC</canonical>
            <polymorphic>TGTCAATTTTGTGAATTTTTGAACAAACATTTTTTTTTGAAAATAAATTGTTTAAAAATAGAAGCCCATTGGCTCGTAATAGAGGAAATACGGTAGGCTAATTCTAGTCCATCCTAAAATTTTTCTAAAAATCTGGATTTACAAAGTCTTTTGCTATTTTTTCTTCATTTTTAAATTTTATAAATTTTTTAAATTTTATAAACATCATGTGTAGTAGAAAACGTCTTCTCAAGCCTCAAAATGTGTATAAATTTTCAAGTACCCAAGAATGTTTTGAGGCTCATTAGAAAACCGAAATCCAACCTCCCTTTTTTCTCCCTTTCTCTTTTTCTTCTGTTCTCTATATTTTCCTCAATATCACACTTACTTCTTTTTTCCCTCGAGATTCTGAAAATCTCTCCTTATCAACAACTTGTTATTATCACTTACTACTTTTTTACATGTTTCTATCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCTWCATGCATATATAAAAAGAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGTTTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTCGGTTTACTTCGAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCTTTTTTTCCTGGCGCCTCCATTTTTGGCCGCAAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCCCCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAGTTTTCGTGTTCTCCCCAACAACTGAATGGTGCGCATTTGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>443 361 135 61</canonical_bands>
                <polymorphic_bands>443 361 196</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAAATCTCTCCTTATCAACAA</pcr_primer_p1>
		<pcr_primer_p2>ATGTTTAGTGCCAAAAATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAAAATCTCTCCTTATCAACAACTTGTTATTATCACTTACTACTTTTTTACATGTTTCTATCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCTACATGCATATATAAAAAGAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGTTTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACAT</canonical_amplicon>
		<polymorphic_amplicon>TGAAAATCTCTCCTTATCAACAACTTGTTATTATCACTTACTACTTTTTTACATGTTTCTATCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCTWCATGCATATATAAAAAGAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGTTTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12396</snp_id>
        <super_contig>c006600988.Contig2</super_contig>
        <contig_pos>55754</contig_pos>
        <strand></strand>
        <context>CGCCCAAAAA[T/A]GTGTAGATTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATTTACCAGAATTTCCGAAAAAGATAAAAAAAAAGAGGGCCGCCCAAAAA</left_flank>
        <right_flank>GTGTAGATTGGATTAGGAGAATGCCTTTTGTTCTCGACAATCAATTCTCG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTCGAGTGGAAAGTCGAAGAGAGCATGTGCACTATTTCTCTTTGTGTTATTGGTTTCTATCTATTGTTTCTCGTTCTATTGTAGAATTTTTGCCACGTGTACTGTTCACAGTGTCGATCTAAAATAGCTGTTCACAGTGTCGATCTAAAATTTTAGTAGGCGAACATACTAGAAAGATTATCCATGAAGTCGACTACAATATCAAAGTCCTTCAAAAAAAAAAGAAAAGCCTAATTTTGACTTGTAAAATTGATTTTTAATCTTCTATTCAATTCAAATCTGAATTAGAGCTCTTTCCCAACAAGACCATTCTTGACTCTAATTATCACTGCAGTGCAAATTTTCATAAATCACATCGTTTTCCTTTCAATTCTACCGCTACACGACTACCCTTCAATCTCTGAACTCCCTCTTTTTTTTCACATTAGAATGTCAAAGCACGATCCGATTTACCAGAATTTCCGAAAAAGATAAAAAAAAAGAGGGCCGCCCAAAAATGTGTAGATTGGATTAGGAGAATGCCTTTTGTTCTCGACAATCAATTCTCGAAGTTATATCCTTTTCGATTTTCTTATTAGATTATTTTTCGCTTCTGGATAATGAGTTCCGCCTTGTAGGATGGTTTTGCCTTCATATAGTTGAACGAATCTAAAAATGGAAGAGCCATTGGTTTTAATTTTCTTTCTAATTTTTTTAGGTTACGGTAGTTGACGTTGTAGGCCCTATGACCCGGCTACCGGTGTTTTTCTTCCGCAGCTCCGATTTTTTGTACTGGCATGATACTTTCACCGTTTTTATTTTGTAGATCAAGAACGAGCAGAACAGCCTTTCGACAACTTCTAGGATATCTTTTCATATTGTTTCTCTCTGGCTGGCGAACCCATGATTTTAAGCTCGTTCTCTTACAATACTCGTTCTTACTCGTTCTTGTTCTCGTTCTCTTACGTTCTCTTCTTAAGCTCGTTTTTGTTAGTTTTTTGTAAGCTTGGATAATGCAG</canonical>
            <polymorphic>AACTCGAGTGGAAAGTCGAAGAGAGCATGTGCACTATTTCTCTTTGTGTTATTGGTTTCTATCTATTGTTTCTCGTTCTATTGTAGAATTTTTGCCACGTGTACTGTTCACAGTGTCGATCTAAAATAGCTGTTCACAGTGTCGATCTAAAATTTTAGTAGGCGAACATACTAGAAAGATTATCCATGAAGTCGACTACAATATCAAAGTCCTTCAAAAAAAAAAGAAAAGCCTAATTTTGACTTGTAAAATTGATTTTTAATCTTCTATTCAATTCAAATCTGAATTAGAGCTCTTTCCCAACAAGACCATTCTTGACTCTAATTATCACTGCAGTGCAAATTTTCATAAATCACATCGTTTTCCTTTCAATTCTACCGCTACACGACTACCCTTCAATCTCTGAACTCCCTCTTTTTTTTCACATTAGAATGTCAAAGCACGATCCGATTTACCAGAATTTCCGAAAAAGATAAAAAAAAAGAGGGCCGCCCAAAAAWGTGTAGATTGGATTAGGAGAATGCCTTTTGTTCTCGACAATCAATTCTCGAAGTTATATCCTTTTCGATTTTCTTATTAGATTATTTTTCGCTTCTGGATAATGAGTTCCGCCTTGTAGGATGGTTTTGCCTTCATATAGTTGAACGAATCTAAAAATGGAAGAGCCATTGGTTTTAATTTTCTTTCTAATTTTTTTAGGTTACGGTAGTTGACGTTGTAGGCCCTATGACCCGGCTACCGGTGTTTTTCTTCCGCAGCTCCGATTTTTTGTACTGGCATGATACTTTCACCGTTTTTATTTTGTAGATCAAGAACGAGCAGAACAGCCTTTCGACAACTTCTAGGATATCTTTTCATATTGTTTCTCTCTGGCTGGCGAACCCATGATTTTAAGCTCGTTCTCTTACAATACTCGTTCTTACTCGTTCTTGTTCTCGTTCTCTTACGTTCTCTTCTTAAGCTCGTTTTTGTTAGTTTTTTGTAAGCTTGGATAATGCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCTCTGAACTCCCTCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTTCAACTATATGAAGGCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATCTCTGAACTCCCTCTTTTTTTTCACATTAGAATGTCAAAGCACGATCCGATTTACCAGAATTTCCGAAAAAGATAAAAAAAAAGAGGGCCGCCCAAAAATGTGTAGATTGGATTAGGAGAATGCCTTTTGTTCTCGACAATCAATTCTCGAAGTTATATCCTTTTCGATTTTCTTATTAGATTATTTTTCGCTTCTGGATAATGAGTTCCGCCTTGTAGGATGGTTTTGCCTTCATATAGTTGAAC</canonical_amplicon>
		<polymorphic_amplicon>AATCTCTGAACTCCCTCTTTTTTTTCACATTAGAATGTCAAAGCACGATCCGATTTACCAGAATTTCCGAAAAAGATAAAAAAAAAGAGGGCCGCCCAAAAAWGTGTAGATTGGATTAGGAGAATGCCTTTTGTTCTCGACAATCAATTCTCGAAGTTATATCCTTTTCGATTTTCTTATTAGATTATTTTTCGCTTCTGGATAATGAGTTCCGCCTTGTAGGATGGTTTTGCCTTCATATAGTTGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12397</snp_id>
        <super_contig>c006600988.Contig2</super_contig>
        <contig_pos>56210</contig_pos>
        <strand>+</strand>
        <context>ACGTTCTCTT[C/T]TTAAGCTCGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACAATACTCGTTCTTACTCGTTCTTGTTCTCGTTCTCTTACGTTCTCTT</left_flank>
        <right_flank>TTAAGCTCGTTTTTGTTAGTTTTTTGTAAGCTTGGATAATGCAGGAATAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAATTTCCGAAAAAGATAAAAAAAAAGAGGGCCGCCCAAAAATGTGTAGATTGGATTAGGAGAATGCCTTTTGTTCTCGACAATCAATTCTCGAAGTTATATCCTTTTCGATTTTCTTATTAGATTATTTTTCGCTTCTGGATAATGAGTTCCGCCTTGTAGGATGGTTTTGCCTTCATATAGTTGAACGAATCTAAAAATGGAAGAGCCATTGGTTTTAATTTTCTTTCTAATTTTTTTAGGTTACGGTAGTTGACGTTGTAGGCCCTATGACCCGGCTACCGGTGTTTTTCTTCCGCAGCTCCGATTTTTTGTACTGGCATGATACTTTCACCGTTTTTATTTTGTAGATCAAGAACGAGCAGAACAGCCTTTCGACAACTTCTAGGATATCTTTTCATATTGTTTCTCTCTGGCTGGCGAACCCATGATTTTAAGCTCGTTCTCTTACAATACTCGTTCTTACTCGTTCTTGTTCTCGTTCTCTTACGTTCTCTTCTTAAGCTCGTTTTTGTTAGTTTTTTGTAAGCTTGGATAATGCAGGAATACGCGTACCGATTGACTTTGAGGAATTTTATAGCCATTAGACAGCAATCATGGAAGGTTGAATATCTAATAAGCATAACTTTTTTTTGATTGGGGAAGTCAAGACGCTAGGTGAGAAAAAGAAGGTGAGAAAAGAAAACGAGAAGGATTATGATTATTCGTTGTTCCGACACTTAGGTGGTGAGCCTGTGTCGGAGCGAAAGTAGAAGGATAGGAACATTAGTTACTCTGCAACTAGTTTATTCCTGTATTAAGGCTCTGATTCGGGATCTTTGAAGCTTCTGTATTAGGGGAGTTTTCGGAGAGACGATGACCACCAGATGAGGGTTCCAGATTGGAGAGAGAAGATAAACCATCCTTTGGCAGCGGGGAGGAGGTTATAGCATGAAGATGTGGCATCGGTTGTTTGGCTCATCCGCAAGCATCAGCTGTTGGGATCATTCGTCAGCGAGT</canonical>
            <polymorphic>AGAATTTCCGAAAAAGATAAAAAAAAAGAGGGCCGCCCAAAAATGTGTAGATTGGATTAGGAGAATGCCTTTTGTTCTCGACAATCAATTCTCGAAGTTATATCCTTTTCGATTTTCTTATTAGATTATTTTTCGCTTCTGGATAATGAGTTCCGCCTTGTAGGATGGTTTTGCCTTCATATAGTTGAACGAATCTAAAAATGGAAGAGCCATTGGTTTTAATTTTCTTTCTAATTTTTTTAGGTTACGGTAGTTGACGTTGTAGGCCCTATGACCCGGCTACCGGTGTTTTTCTTCCGCAGCTCCGATTTTTTGTACTGGCATGATACTTTCACCGTTTTTATTTTGTAGATCAAGAACGAGCAGAACAGCCTTTCGACAACTTCTAGGATATCTTTTCATATTGTTTCTCTCTGGCTGGCGAACCCATGATTTTAAGCTCGTTCTCTTACAATACTCGTTCTTACTCGTTCTTGTTCTCGTTCTCTTACGTTCTCTTYTTAAGCTCGTTTTTGTTAGTTTTTTGTAAGCTTGGATAATGCAGGAATACGCGTACCGATTGACTTTGAGGAATTTTATAGCCATTAGACAGCAATCATGGAAGGTTGAATATCTAATAAGCATAACTTTTTTTTGATTGGGGAAGTCAAGACGCTAGGTGAGAAAAAGAAGGTGAGAAAAGAAAACGAGAAGGATTATGATTATTCGTTGTTCCGACACTTAGGTGGTGAGCCTGTGTCGGAGCGAAAGTAGAAGGATAGGAACATTAGTTACTCTGCAACTAGTTTATTCCTGTATTAAGGCTCTGATTCGGGATCTTTGAAGCTTCTGTATTAGGGGAGTTTTCGGAGAGACGATGACCACCAGATGAGGGTTCCAGATTGGAGAGAGAAGATAAACCATCCTTTGGCAGCGGGGAGGAGGTTATAGCATGAAGATGTGGCATCGGTTGTTTGGCTCATCCGCAAGCATCAGCTGTTGGGATCATTCGTCAGCGAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTTAAG</site>
                <isoschizomers>
                    <enzyme>AflII</enzyme>
                    <enzyme>BfrI</enzyme>
                    <enzyme>BspTI</enzyme>
                    <enzyme>Bst98I</enzyme>
                    <enzyme>MspCI</enzyme>
                    <enzyme>Vha464I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGTTTTTATTTTGTAGATCAAG</pcr_primer_p1>
		<pcr_primer_p2>ATGGCTATAAAATTCCTCAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCGTTTTTATTTTGTAGATCAAGAACGAGCAGAACAGCCTTTCGACAACTTCTAGGATATCTTTTCATATTGTTTCTCTCTGGCTGGCGAACCCATGATTTTAAGCTCGTTCTCTTACAATACTCGTTCTTACTCGTTCTTGTTCTCGTTCTCTTACGTTCTCTTCTTAAGCTCGTTTTTGTTAGTTTTTTGTAAGCTTGGATAATGCAGGAATACGCGTACCGATTGACTTTGAGGAATTTTATAGCCAT</canonical_amplicon>
		<polymorphic_amplicon>CCGTTTTTATTTTGTAGATCAAGAACGAGCAGAACAGCCTTTCGACAACTTCTAGGATATCTTTTCATATTGTTTCTCTCTGGCTGGCGAACCCATGATTTTAAGCTCGTTCTCTTACAATACTCGTTCTTACTCGTTCTTGTTCTCGTTCTCTTACGTTCTCTTYTTAAGCTCGTTTTTGTTAGTTTTTTGTAAGCTTGGATAATGCAGGAATACGCGTACCGATTGACTTTGAGGAATTTTATAGCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12398</snp_id>
        <super_contig>c006600988.Contig2</super_contig>
        <contig_pos>60845</contig_pos>
        <strand>+</strand>
        <context>ACTCTTCTCT[C/T]CTTTTTTTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTGTAATTTCTCATTTTGTAATTTCAAATCTTCACAGACTCTTCTCT</left_flank>
        <right_flank>CTTTTTTTGCTTTTCCAATTTCGATTCTTCTTCGTTCGTTATCACAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTATTTGACCACACTAATTGTTCATTTCAAATTTAAATGTATCCCTTCTTACAAACTATTACCATTGCCGAAAATTCAAGAACACAAGGTCGAAATGTCGGCCTGTGTGACCATTCTAGTATTATTTCCACTCTCATCTTACCCTTCCTTTTTCGGGATAACACATTTTCCTTATTCGCGAATGGTATTCTTCTTTCAATCCATTTTCTTGTTCCGAAACAATTTTTCTCCACTAACAATTTGATTCCATATACGTTTGTATGTAGACTATTCTTATAGGACAAGAAATATGACATGAAGTTAGGTGTTTCAACTTTTATTTAGTTGTAGCGATAATTCGAATTTTCCAAAAACTTTTTGTTATTTTCCCAGTGTTCCTCAAGCGATTCCAATTTCCAATTGTCTCACAGACTATATCAAACAAAATGAATTTCTACTATTGTCAAATTTTGTAATTTCTCATTTTGTAATTTCAAATCTTCACAGACTCTTCTCTTCTTTTTTTGCTTTTCCAATTTCGATTCTTCTTCGTTCGTTATCACAAAAAGGGAACCGCTCGCGTTCATATATATTTATGTTTCTTCCGTTTTGTTTATTTCTCCCATCGAAAAAAATAGGGTGGAGCCTGTCACAGCGGTATATATTTTCTATTTTTCCTAGTCACCAAGTTTTTGCGACACTCGGAAAAATGGAGCAGCAAACCATATTCTGTTTTGATTCGCTACTTGACGTGGCAATTCGCTGTTGGCGGCTTAACCATAGGAATGATATCAATCGGAGAAGAATCAGTCATGAGGTCTATAAGGTATGCTAGGGTAGAGATAGCTAGATAGCTTCAAAGCTCAGTTCATTAAATGTACGTTTTCTAAATGTTTGCCGCGCTACCGACGCTTCAAACATCTGGCTGGTGGGACTACGGCGCGAGTTCGTTGACTCTTTTGAAAAACTTCTTAAAATTTCAATGATTTTTTTCTTATTGTTCTTAAGACCTGCGAAC</canonical>
            <polymorphic>TTTCTATTTGACCACACTAATTGTTCATTTCAAATTTAAATGTATCCCTTCTTACAAACTATTACCATTGCCGAAAATTCAAGAACACAAGGTCGAAATGTCGGCCTGTGTGACCATTCTAGTATTATTTCCACTCTCATCTTACCCTTCCTTTTTCGGGATAACACATTTTCCTTATTCGCGAATGGTATTCTTCTTTCAATCCATTTTCTTGTTCCGAAACAATTTTTCTCCACTAACAATTTGATTCCATATACGTTTGTATGTAGACTATTCTTATAGGACAAGAAATATGACATGAAGTTAGGTGTTTCAACTTTTATTTAGTTGTAGCGATAATTCGAATTTTCCAAAAACTTTTTGTTATTTTCCCAGTGTTCCTCAAGCGATTCCAATTTCCAATTGTCTCACAGACTATATCAAACAAAATGAATTTCTACTATTGTCAAATTTTGTAATTTCTCATTTTGTAATTTCAAATCTTCACAGACTCTTCTCTYCTTTTTTTGCTTTTCCAATTTCGATTCTTCTTCGTTCGTTATCACAAAAAGGGAACCGCTCGCGTTCATATATATTTATGTTTCTTCCGTTTTGTTTATTTCTCCCATCGAAAAAAATAGGGTGGAGCCTGTCACAGCGGTATATATTTTCTATTTTTCCTAGTCACCAAGTTTTTGCGACACTCGGAAAAATGGAGCAGCAAACCATATTCTGTTTTGATTCGCTACTTGACGTGGCAATTCGCTGTTGGCGGCTTAACCATAGGAATGATATCAATCGGAGAAGAATCAGTCATGAGGTCTATAAGGTATGCTAGGGTAGAGATAGCTAGATAGCTTCAAAGCTCAGTTCATTAAATGTACGTTTTCTAAATGTTTGCCGCGCTACCGACGCTTCAAACATCTGGCTGGTGGGACTACGGCGCGAGTTCGTTGACTCTTTTGAAAAACTTCTTAAAATTTCAATGATTTTTTTCTTATTGTTCTTAAGACCTGCGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTTTTTGTTATTTTCCCAGT</pcr_primer_p1>
		<pcr_primer_p2>AATAAACAAAACGGAAGAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAACTTTTTGTTATTTTCCCAGTGTTCCTCAAGCGATTCCAATTTCCAATTGTCTCACAGACTATATCAAACAAAATGAATTTCTACTATTGTCAAATTTTGTAATTTCTCATTTTGTAATTTCAAATCTTCACAGACTCTTCTCTTCTTTTTTTGCTTTTCCAATTTCGATTCTTCTTCGTTCGTTATCACAAAAAGGGAACCGCTCGCGTTCATATATATTTATGTTTCTTCCGTTTTGTTTATT</canonical_amplicon>
		<polymorphic_amplicon>AAACTTTTTGTTATTTTCCCAGTGTTCCTCAAGCGATTCCAATTTCCAATTGTCTCACAGACTATATCAAACAAAATGAATTTCTACTATTGTCAAATTTTGTAATTTCTCATTTTGTAATTTCAAATCTTCACAGACTCTTCTCTYCTTTTTTTGCTTTTCCAATTTCGATTCTTCTTCGTTCGTTATCACAAAAAGGGAACCGCTCGCGTTCATATATATTTATGTTTCTTCCGTTTTGTTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12400</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>40209</contig_pos>
        <strand>+</strand>
        <context>TGAAAATGGA[A/C]ATTTTGGCGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATGAGGGACAAATGGAGGTCAAGGGGGTGATAAATTTTTTGAAAATGGA</left_flank>
        <right_flank>ATTTTGGCGCCAAAATGAATGTTTGGGAATAAGGAATTTTCTAAGGAATA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACAAGAAACAAGATAAATCAGGTCCAAGTTAAGGGCTATTTCGCTTAAGGCCATTCGCCCAAAAAAGTTGTCAACTACAAAAATAAAGCCCAATTTTTGATTAGTATTCTCTGACATTTTCAGACAAATTGGAAAATTCCGAACCACTTTTTTCAGGACTCCAAAGTTGACTATTTTGGACACGAAATTTCGGTATTTTGAACTTTCCAGAATAGGTTATATTTTTTCAAAGCTCTGAATTCCAATTTTTCGAAAATGTTTTTCAAAATCTGAAAATCGCTAAATTTATTTTTTTTTCAGTGTAAACGTCGGGTGCGGTCCGGCCGAGGAGCGTGTCCTTCTGACCGGTCTTCATGCGGTCGCCGACATTTATTGTGAGATCTGCAAAACGACATTGGGATGGAAATATGTGAGTAGTATAAAGAACAGTTGAATAGGAGGGAGTGTGATGAGGGACAAATGGAGGTCAAGGGGGTGATAAATTTTTTGAAAATGGAAATTTTGGCGCCAAAATGAATGTTTGGGAATAAGGAATTTTCTAAGGAATAGAAAGGTTTCAATCATAATAGAATCGAAGGATTTAAGAATCCAACAACCCAAATAGCTAATTGTAAGGAAACAGAATCTAAAAACCAACAATCTAAGATTTCAAGATTTCAAGGATCCGAGATTCCAAAAATTCGAGCATTCAGAACTCCAAAAAATTTTAAAAAATCCAAAAAAAACCAAGGAATTCTGAAAACTCTAAAAGTTTGTAAAAATCCAAAAAACCAAAAATTCCAATGAATGTCAATTTTTCGGAGTTCTGGTGAACTCAAAAAAATTCAGAAATTCCGAAGAAGTTCTAGAAAATTCAAAATTTTAAATAAATCTTAAAAACTCCAAATATCCTATAAATGTAATTCCTGTAATTTCAAAAAACACAAAAATTCAAAAAATTCGAAAACCCTAATTCTCTATTCTATATTTTCGGGTCCATACACTTTTAAATTTCCGAT</canonical>
            <polymorphic>TGACAAGAAACAAGATAAATCAGGTCCAAGTTAAGGGCTATTTCGCTTAAGGCCATTCGCCCAAAAAAGTTGTCAACTACAAAAATAAAGCCCAATTTTTGATTAGTATTCTCTGACATTTTCAGACAAATTGGAAAATTCCGAACCACTTTTTTCAGGACTCCAAAGTTGACTATTTTGGACACGAAATTTCGGTATTTTGAACTTTCCAGAATAGGTTATATTTTTTCAAAGCTCTGAATTCCAATTTTTCGAAAATGTTTTTCAAAATCTGAAAATCGCTAAATTTATTTTTTTTTCAGTGTAAACGTCGGGTGCGGTCCGGCCGAGGAGCGTGTCCTTCTGACCGGTCTTCATGCGGTCGCCGACATTTATTGTGAGATCTGCAAAACGACATTGGGATGGAAATATGTGAGTAGTATAAAGAACAGTTGAATAGGAGGGAGTGTGATGAGGGACAAATGGAGGTCAAGGGGGTGATAAATTTTTTGAAAATGGAMATTTTGGCGCCAAAATGAATGTTTGGGAATAAGGAATTTTCTAAGGAATAGAAAGGTTTCAATCATAATAGAATCGAAGGATTTAAGAATCCAACAACCCAAATAGCTAATTGTAAGGAAACAGAATCTAAAAACCAACAATCTAAGATTTCAAGATTTCAAGGATCCGAGATTCCAAAAATTCGAGCATTCAGAACTCCAAAAAATTTTAAAAAATCCAAAAAAAACCAAGGAATTCTGAAAACTCTAAAAGTTTGTAAAAATCCAAAAAACCAAAAATTCCAATGAATGTCAATTTTTCGGAGTTCTGGTGAACTCAAAAAAATTCAGAAATTCCGAAGAAGTTCTAGAAAATTCAAAATTTTAAATAAATCTTAAAAACTCCAAATATCCTATAAATGTAATTCCTGTAATTTCAAAAAACACAAAAATTCAAAAAATTCGAAAACCCTAATTCTCTATTCTATATTTTCGGGTCCATACACTTTTAAATTTCCGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>198 145 136 70 52 52 51 46 45 44 35 29 25 21 17 10 9 8 7</canonical_bands>
                <polymorphic_bands>198 145 136 70 52 52 52 51 46 45 44 29 25 21 10 9 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>198 93 74 71 52 51 44 43 39 38 35 35 30 29 25 21 18 17 16 14 10 9 9 8 8 7 6</canonical_bands>
                <polymorphic_bands>198 93 74 71 52 52 51 44 43 39 38 35 30 29 25 21 18 16 14 10 9 9 8 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGATGGAAATATGTGAGTAGTA</pcr_primer_p1>
		<pcr_primer_p2>TGTTGGTTTTTAGATTCTGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GGGATGGAAATATGTGAGTAGTATAAAGAACAGTTGAATAGGAGGGAGTGTGATGAGGGACAAATGGAGGTCAAGGGGGTGATAAATTTTTTGAAAATGGAAATTTTGGCGCCAAAATGAATGTTTGGGAATAAGGAATTTTCTAAGGAATAGAAAGGTTTCAATCATAATAGAATCGAAGGATTTAAGAATCCAACAACCCAAATAGCTAATTGTAAGGAAACAGAATCTAAAAACCAACA</canonical_amplicon>
		<polymorphic_amplicon>GGGATGGAAATATGTGAGTAGTATAAAGAACAGTTGAATAGGAGGGAGTGTGATGAGGGACAAATGGAGGTCAAGGGGGTGATAAATTTTTTGAAAATGGAMATTTTGGCGCCAAAATGAATGTTTGGGAATAAGGAATTTTCTAAGGAATAGAAAGGTTTCAATCATAATAGAATCGAAGGATTTAAGAATCCAACAACCCAAATAGCTAATTGTAAGGAAACAGAATCTAAAAACCAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12401</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>42110</contig_pos>
        <strand>+</strand>
        <context>CTGAAAACCT[A/G]AAAACCCCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCT</left_flank>
        <right_flank>AAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTAAGTTTTGGGATTTTTGATTTTTTGAAAGTTTTGGAAATTTGGAATTTCTAAAATTTCGAATTTCTGATTTTTCGAATTTTCGAATTTCTGAATTTTTTTTTGGATTTCGAAATTTTTTCTCTAAATATCGAAATCTCTAAACTCCCCAAATCACTAGGCTACACCGACCCAATTTCCAAGGCTACAAGAATTTCTTTTTCCTCCAAAATTTGTTTTTTTTTCTTCTTTTTCTCTCATTTTTCAATTTTTTTTGTCTCGCAACAAAAAACAGAACACAACACAAATCACGCGGCGATTTATCTCTAATCCTTTGCGTCTCCTCTCATCTCATGCTATCTCGCCCTTCTACTAGGTACTTTTCTATTTTTACTTCTTCCCCCCACTTTCAACGGTTCCTTTTTAGCCATTTTCCTTTTTTTATTTTTCCGGAATTTTCTGTGTGACGTGGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCTAAAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAACTTTTTAAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCACTGACTACAGTAATCTCAACGACAAGCACTGGACCTACAAGTAATTCGAAAGATCAAGAATTCGAGTTGGTCGAAAAGTGAGTTGGTTTTTTGTTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCTGGAATTTCTGATTTTTCTAAATTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAATTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAATTTTGAGGATTTTTAGGGATTTTACGCATTTCGTAATTTTTGTATATACTGGGGTTTTTGGAATTCTGAAATTC</canonical>
            <polymorphic>TTTTAAGTTTTGGGATTTTTGATTTTTTGAAAGTTTTGGAAATTTGGAATTTCTAAAATTTCGAATTTCTGATTTTTCGAATTTTCGAATTTCTGAATTTTTTTTTGGATTTCGAAATTTTTTCTCTAAATATCGAAATCTCTAAACTCCCCAAATCACTAGGCTACACCGACCCAATTTCCAAGGCTACAAGAATTTCTTTTTCCTCCAAAATTTGTTTTTTTTTCTTCTTTTTCTCTCATTTTTCAATTTTTTTTGTCTCGCAACAAAAAACAGAACACAACACAAATCACGCGGCGATTTATCTCTAATCCTTTGCGTCTCCTCTCATCTCATGCTATCTCGCCCTTCTACTAGGTACTTTTCTATTTTTACTTCTTCCCCCCACTTTCAACGGTTCCTTTTTAGCCATTTTCCTTTTTTTATTTTTCCGGAATTTTCTGTGTGACGTGGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCTRAAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAACTTTTTAAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCACTGACTACAGTAATCTCAACGACAAGCACTGGACCTACAAGTAATTCGAAAGATCAAGAATTCGAGTTGGTCGAAAAGTGAGTTGGTTTTTTGTTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCTGGAATTTCTGATTTTTCTAAATTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAATTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAATTTTGAGGATTTTTAGGGATTTTACGCATTTCGTAATTTTTGTATATACTGGGGTTTTTGGAATTCTGAAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTATTTTTCCGGAATTTTCT</pcr_primer_p1>
		<pcr_primer_p2>GCTTGTCGTTGAGATTACTGTAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTATTTTTCCGGAATTTTCTGTGTGACGTGGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCTAAAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAACTTTTTAAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCACTGACTACAGTAATCTCAACGACAAGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTATTTTTCCGGAATTTTCTGTGTGACGTGGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCTRAAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAACTTTTTAAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCACTGACTACAGTAATCTCAACGACAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12402</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>42202</contig_pos>
        <strand>+</strand>
        <context>AATGTCGGAA[A/C]TTTTKAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAA</left_flank>
        <right_flank>TTTTTAAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAATTTTTTTTTGGATTTCGAAATTTTTTCTCTAAATATCGAAATCTCTAAACTCCCCAAATCACTAGGCTACACCGACCCAATTTCCAAGGCTACAAGAATTTCTTTTTCCTCCAAAATTTGTTTTTTTTTCTTCTTTTTCTCTCATTTTTCAATTTTTTTTGTCTCGCAACAAAAAACAGAACACAACACAAATCACGCGGCGATTTATCTCTAATCCTTTGCGTCTCCTCTCATCTCATGCTATCTCGCCCTTCTACTAGGTACTTTTCTATTTTTACTTCTTCCCCCCACTTTCAACGGTTCCTTTTTAGCCATTTTCCTTTTTTTATTTTTCCGGAATTTTCTGTGTGACGTGGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCTAAAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAACTTTTTAAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCACTGACTACAGTAATCTCAACGACAAGCACTGGACCTACAAGTAATTCGAAAGATCAAGAATTCGAGTTGGTCGAAAAGTGAGTTGGTTTTTTGTTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCTGGAATTTCTGATTTTTCTAAATTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAATTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAATTTTGAGGATTTTTAGGGATTTTACGCATTTCGTAATTTTTGTATATACTGGGGTTTTTGGAATTCTGAAATTCTGAGTTTTTTATAATTTTTGAATTTCTGAATTTCCAGAAATTTCCTGGATTTTCGGGTATTTTGGGGTTTTTATGATTTTTGGAAACTTTCG</canonical>
            <polymorphic>CTGAATTTTTTTTTGGATTTCGAAATTTTTTCTCTAAATATCGAAATCTCTAAACTCCCCAAATCACTAGGCTACACCGACCCAATTTCCAAGGCTACAAGAATTTCTTTTTCCTCCAAAATTTGTTTTTTTTTCTTCTTTTTCTCTCATTTTTCAATTTTTTTTGTCTCGCAACAAAAAACAGAACACAACACAAATCACGCGGCGATTTATCTCTAATCCTTTGCGTCTCCTCTCATCTCATGCTATCTCGCCCTTCTACTAGGTACTTTTCTATTTTTACTTCTTCCCCCCACTTTCAACGGTTCCTTTTTAGCCATTTTCCTTTTTTTATTTTTCCGGAATTTTCTGTGTGACGTGGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCTAAAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAAMTTTTTAAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCACTGACTACAGTAATCTCAACGACAAGCACTGGACCTACAAGTAATTCGAAAGATCAAGAATTCGAGTTGGTCGAAAAGTGAGTTGGTTTTTTGTTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCTGGAATTTCTGATTTTTCTAAATTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAATTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAATTTTGAGGATTTTTAGGGATTTTACGCATTTCGTAATTTTTGTATATACTGGGGTTTTTGGAATTCTGAAATTCTGAGTTTTTTATAATTTTTGAATTTCTGAATTTCCAGAAATTTCCTGGATTTTCGGGTATTTTGGGGTTTTTATGATTTTTGGAAACTTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCAATTTATTGACTTTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>TCTTGATCTTTCGAATTACTTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCTAAAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAACTTTTTAAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCACTGACTACAGTAATCTCAACGACAAGCACTGGACCTACAAGTAATTCGAAAGATCAAGA</canonical_amplicon>
		<polymorphic_amplicon>GGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCTAAAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAAMTTTTTAAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCACTGACTACAGTAATCTCAACGACAAGCACTGGACCTACAAGTAATTCGAAAGATCAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12403</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>42207</contig_pos>
        <strand>+</strand>
        <context>CGGAAMTTTT[G/T]AAAAATTCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAACTTTT</left_flank>
        <right_flank>AAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCACTGAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTTTTGGATTTCGAAATTTTTTCTCTAAATATCGAAATCTCTAAACTCCCCAAATCACTAGGCTACACCGACCCAATTTCCAAGGCTACAAGAATTTCTTTTTCCTCCAAAATTTGTTTTTTTTTCTTCTTTTTCTCTCATTTTTCAATTTTTTTTGTCTCGCAACAAAAAACAGAACACAACACAAATCACGCGGCGATTTATCTCTAATCCTTTGCGTCTCCTCTCATCTCATGCTATCTCGCCCTTCTACTAGGTACTTTTCTATTTTTACTTCTTCCCCCCACTTTCAACGGTTCCTTTTTAGCCATTTTCCTTTTTTTATTTTTCCGGAATTTTCTGTGTGACGTGGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCTAAAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAACTTTTTAAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCACTGACTACAGTAATCTCAACGACAAGCACTGGACCTACAAGTAATTCGAAAGATCAAGAATTCGAGTTGGTCGAAAAGTGAGTTGGTTTTTTGTTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCTGGAATTTCTGATTTTTCTAAATTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAATTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAATTTTGAGGATTTTTAGGGATTTTACGCATTTCGTAATTTTTGTATATACTGGGGTTTTTGGAATTCTGAAATTCTGAGTTTTTTATAATTTTTGAATTTCTGAATTTCCAGAAATTTCCTGGATTTTCGGGTATTTTGGGGTTTTTATGATTTTTGGAAACTTTCGAATTT</canonical>
            <polymorphic>TTTTTTTTTGGATTTCGAAATTTTTTCTCTAAATATCGAAATCTCTAAACTCCCCAAATCACTAGGCTACACCGACCCAATTTCCAAGGCTACAAGAATTTCTTTTTCCTCCAAAATTTGTTTTTTTTTCTTCTTTTTCTCTCATTTTTCAATTTTTTTTGTCTCGCAACAAAAAACAGAACACAACACAAATCACGCGGCGATTTATCTCTAATCCTTTGCGTCTCCTCTCATCTCATGCTATCTCGCCCTTCTACTAGGTACTTTTCTATTTTTACTTCTTCCCCCCACTTTCAACGGTTCCTTTTTAGCCATTTTCCTTTTTTTATTTTTCCGGAATTTTCTGTGTGACGTGGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCTAAAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAACTTTTKAAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCACTGACTACAGTAATCTCAACGACAAGCACTGGACCTACAAGTAATTCGAAAGATCAAGAATTCGAGTTGGTCGAAAAGTGAGTTGGTTTTTTGTTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCTGGAATTTCTGATTTTTCTAAATTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAATTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAATTTTGAGGATTTTTAGGGATTTTACGCATTTCGTAATTTTTGTATATACTGGGGTTTTTGGAATTCTGAAATTCTGAGTTTTTTATAATTTTTGAATTTCTGAATTTCCAGAAATTTCCTGGATTTTCGGGTATTTTGGGGTTTTTATGATTTTTGGAAACTTTCGAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>501 481 18</canonical_bands>
                <polymorphic_bands>519 481</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCAATTTATTGACTTTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>TCTTGATCTTTCGAATTACTTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCTAAAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAACTTTTTAAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCACTGACTACAGTAATCTCAACGACAAGCACTGGACCTACAAGTAATTCGAAAGATCAAGA</canonical_amplicon>
		<polymorphic_amplicon>GGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCTAAAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAACTTTTKAAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCACTGACTACAGTAATCTCAACGACAAGCACTGGACCTACAAGTAATTCGAAAGATCAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12404</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>42220</contig_pos>
        <strand>+</strand>
        <context>AAATTCTGAA[A/T]TTTTTTCTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAATGAAAACTTTTTTCTTAAAATGTCGGAACTTTTTAAAAATTCTGAA</left_flank>
        <right_flank>TTTTTTCTAGAACAATGAGGGATGACAAACCACTGACTACAGTAATCTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGAAATTTTTTCTCTAAATATCGAAATCTCTAAACTCCCCAAATCACTAGGCTACACCGACCCAATTTCCAAGGCTACAAGAATTTCTTTTTCCTCCAAAATTTGTTTTTTTTTCTTCTTTTTCTCTCATTTTTCAATTTTTTTTGTCTCGCAACAAAAAACAGAACACAACACAAATCACGCGGCGATTTATCTCTAATCCTTTGCGTCTCCTCTCATCTCATGCTATCTCGCCCTTCTACTAGGTACTTTTCTATTTTTACTTCTTCCCCCCACTTTCAACGGTTCCTTTTTAGCCATTTTCCTTTTTTTATTTTTCCGGAATTTTCTGTGTGACGTGGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCTAAAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAACTTTTTAAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCACTGACTACAGTAATCTCAACGACAAGCACTGGACCTACAAGTAATTCGAAAGATCAAGAATTCGAGTTGGTCGAAAAGTGAGTTGGTTTTTTGTTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCTGGAATTTCTGATTTTTCTAAATTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAATTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAATTTTGAGGATTTTTAGGGATTTTACGCATTTCGTAATTTTTGTATATACTGGGGTTTTTGGAATTCTGAAATTCTGAGTTTTTTATAATTTTTGAATTTCTGAATTTCCAGAAATTTCCTGGATTTTCGGGTATTTTGGGGTTTTTATGATTTTTGGAAACTTTCGAATTTTTTGAATTTTTTC</canonical>
            <polymorphic>TTCGAAATTTTTTCTCTAAATATCGAAATCTCTAAACTCCCCAAATCACTAGGCTACACCGACCCAATTTCCAAGGCTACAAGAATTTCTTTTTCCTCCAAAATTTGTTTTTTTTTCTTCTTTTTCTCTCATTTTTCAATTTTTTTTGTCTCGCAACAAAAAACAGAACACAACACAAATCACGCGGCGATTTATCTCTAATCCTTTGCGTCTCCTCTCATCTCATGCTATCTCGCCCTTCTACTAGGTACTTTTCTATTTTTACTTCTTCCCCCCACTTTCAACGGTTCCTTTTTAGCCATTTTCCTTTTTTTATTTTTCCGGAATTTTCTGTGTGACGTGGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCTAAAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAACTTTTTAAAAATTCTGAAWTTTTTTCTAGAACAATGAGGGATGACAAACCACTGACTACAGTAATCTCAACGACAAGCACTGGACCTACAAGTAATTCGAAAGATCAAGAATTCGAGTTGGTCGAAAAGTGAGTTGGTTTTTTGTTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCTGGAATTTCTGATTTTTCTAAATTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAATTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAATTTTGAGGATTTTTAGGGATTTTACGCATTTCGTAATTTTTGTATATACTGGGGTTTTTGGAATTCTGAAATTCTGAGTTTTTTATAATTTTTGAATTTCTGAATTTCCAGAAATTTCCTGGATTTTCGGGTATTTTGGGGTTTTTATGATTTTTGGAAACTTTCGAATTTTTTGAATTTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>223 93 87 78 71 63 54 45 43 33 33 25 25 18 17 11 10 9 9 9 8 8 8 8 7 5</canonical_bands>
                <polymorphic_bands>223 100 87 78 71 63 54 45 43 33 33 25 25 18 17 11 10 9 9 9 8 8 8 8 5</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>187 77 71 67 60 54 45 36 36 33 33 27 26 25 20 18 18 17 17 17 16 11 10 9 9 9 8 8 8 8 8 7 5</canonical_bands>
                <polymorphic_bands>187 84 71 67 60 54 45 36 36 33 33 27 26 25 20 18 18 17 17 17 16 11 10 9 9 9 8 8 8 8 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCAATTTATTGACTTTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>TCTTGATCTTTCGAATTACTTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCTAAAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAACTTTTTAAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCACTGACTACAGTAATCTCAACGACAAGCACTGGACCTACAAGTAATTCGAAAGATCAAGA</canonical_amplicon>
		<polymorphic_amplicon>GGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCTAAAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAACTTTTTAAAAATTCTGAAWTTTTTTCTAGAACAATGAGGGATGACAAACCACTGACTACAGTAATCTCAACGACAAGCACTGGACCTACAAGTAATTCGAAAGATCAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12405</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>42255</contig_pos>
        <strand>+</strand>
        <context>ACAAACCACT[A/G]ACTACAGTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTAAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCACT</left_flank>
        <right_flank>ACTACAGTAATCTCAACGACAAGCACTGGACCTACAAGTAATTCGAAAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCCCCAAATCACTAGGCTACACCGACCCAATTTCCAAGGCTACAAGAATTTCTTTTTCCTCCAAAATTTGTTTTTTTTTCTTCTTTTTCTCTCATTTTTCAATTTTTTTTGTCTCGCAACAAAAAACAGAACACAACACAAATCACGCGGCGATTTATCTCTAATCCTTTGCGTCTCCTCTCATCTCATGCTATCTCGCCCTTCTACTAGGTACTTTTCTATTTTTACTTCTTCCCCCCACTTTCAACGGTTCCTTTTTAGCCATTTTCCTTTTTTTATTTTTCCGGAATTTTCTGTGTGACGTGGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCTAAAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAACTTTTTAAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCACTGACTACAGTAATCTCAACGACAAGCACTGGACCTACAAGTAATTCGAAAGATCAAGAATTCGAGTTGGTCGAAAAGTGAGTTGGTTTTTTGTTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCTGGAATTTCTGATTTTTCTAAATTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAATTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAATTTTGAGGATTTTTAGGGATTTTACGCATTTCGTAATTTTTGTATATACTGGGGTTTTTGGAATTCTGAAATTCTGAGTTTTTTATAATTTTTGAATTTCTGAATTTCCAGAAATTTCCTGGATTTTCGGGTATTTTGGGGTTTTTATGATTTTTGGAAACTTTCGAATTTTTTGAATTTTTTCGAATTTCTGAATTTCTGAGCAATTTGGTTTTGAGC</canonical>
            <polymorphic>ACTCCCCAAATCACTAGGCTACACCGACCCAATTTCCAAGGCTACAAGAATTTCTTTTTCCTCCAAAATTTGTTTTTTTTTCTTCTTTTTCTCTCATTTTTCAATTTTTTTTGTCTCGCAACAAAAAACAGAACACAACACAAATCACGCGGCGATTTATCTCTAATCCTTTGCGTCTCCTCTCATCTCATGCTATCTCGCCCTTCTACTAGGTACTTTTCTATTTTTACTTCTTCCCCCCACTTTCAACGGTTCCTTTTTAGCCATTTTCCTTTTTTTATTTTTCCGGAATTTTCTGTGTGACGTGGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCTAAAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAACTTTTTAAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCACTRACTACAGTAATCTCAACGACAAGCACTGGACCTACAAGTAATTCGAAAGATCAAGAATTCGAGTTGGTCGAAAAGTGAGTTGGTTTTTTGTTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCTGGAATTTCTGATTTTTCTAAATTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAATTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAATTTTGAGGATTTTTAGGGATTTTACGCATTTCGTAATTTTTGTATATACTGGGGTTTTTGGAATTCTGAAATTCTGAGTTTTTTATAATTTTTGAATTTCTGAATTTCCAGAAATTTCCTGGATTTTCGGGTATTTTGGGGTTTTTATGATTTTTGGAAACTTTCGAATTTTTTGAATTTTTTCGAATTTCTGAATTTCTGAGCAATTTGGTTTTGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCAATTTATTGACTTTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>TCTTGATCTTTCGAATTACTTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCTAAAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAACTTTTTAAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCACTGACTACAGTAATCTCAACGACAAGCACTGGACCTACAAGTAATTCGAAAGATCAAGA</canonical_amplicon>
		<polymorphic_amplicon>GGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCTAAAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAACTTTTTAAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCACTRACTACAGTAATCTCAACGACAAGCACTGGACCTACAAGTAATTCGAAAGATCAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12406</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>67196</contig_pos>
        <strand>+</strand>
        <context>TCAATTTCTT[A/G]TCCAGCCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACTGAAAAAAGCAAAAGCCAAAAGAAAATCCTAGATGTCTCAATTTCTT</left_flank>
        <right_flank>TCCAGCCAAAAAACTAGAATTCAGAATTAGATTTTCAGAAAAAGGGGGCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGTTTTGTTTTTCGAATTTTAAGAAAATTTCAGAGCAATCAAAATCGAATTTGAGTGAGAAAACAAGAAAACATTCTCAAAAATCGCTGAAAATTCCAAATTCTCATGCTTCCCGCCGACGCAAGAATTACAGACTGCGTGCATTATTGCTTCATGGTGAACATTCGAATGAAAATTTTCTCGATTTTTTGATTTTCAGTGTTTTTTCCCAATTTTAAAGCCTTTTTCGAAAGTTTATGAGTTTTAAGAAAATTTAGAGGATACCTAGAACATTCTGAACTATATTTATAGTGTGAAAACCTCAAAAAACACGAATTTTCCGGAAAAATTTAAAAAATACTGTAAATTTAAATTTTCCGCTTCTTCAAAGTTTTAGCAAAATGTCAGACCTAGAAAAGAATATAAAAGGAATTCTCGAAAAATATGAAATTGAAATTTTTTCCAAAAACTGAAAAAAGCAAAAGCCAAAAGAAAATCCTAGATGTCTCAATTTCTTATCCAGCCAAAAAACTAGAATTCAGAATTAGATTTTCAGAAAAAGGGGGCGACGAAAAAAGTGTTTTCAGATGGGTCGGGCCGCCTCGTTCGGAACACAAAAACATGTTTTTGCAGTAGTGGTGGTAGAGACTATGTCGTGTATCTCCCTCCCCTCTGGCGGTCCCCCAATACAATGATAACTACTTTTTCTGACTGTCTGCGTCTCTGAGTTTTGATCTGCTCTCTCTCTTTCTCTCTATACTTTTCTCATTGAGGAGGCGCCCGGCGCCCGATTCAGTTGTTTTGTTTTGTTTTGTGAAGAGCGGGAAGATGAGAGAAGATTTTCAAGATTTCAAAAAGATTTGGGTCTCGCCACGAAGACTTACACGGTCTAGAAGGCGCGAGCGATCCTTGCAGGTTCCGTTCGAGCGTCGAGATTCTGAAAAATCAGAATTGGAAAAAAAACAAAAAATTCGTTTTTTTTCTCATTTTCAGAAAGGAGAGAATAACAAGAAAAAAA</canonical>
            <polymorphic>TTTTGTTTTGTTTTTCGAATTTTAAGAAAATTTCAGAGCAATCAAAATCGAATTTGAGTGAGAAAACAAGAAAACATTCTCAAAAATCGCTGAAAATTCCAAATTCTCATGCTTCCCGCCGACGCAAGAATTACAGACTGCGTGCATTATTGCTTCATGGTGAACATTCGAATGAAAATTTTCTCGATTTTTTGATTTTCAGTGTTTTTTCCCAATTTTAAAGCCTTTTTCGAAAGTTTATGAGTTTTAAGAAAATTTAGAGGATACCTAGAACATTCTGAACTATATTTATAGTGTGAAAACCTCAAAAAACACGAATTTTCCGGAAAAATTTAAAAAATACTGTAAATTTAAATTTTCCGCTTCTTCAAAGTTTTAGCAAAATGTCAGACCTAGAAAAGAATATAAAAGGAATTCTCGAAAAATATGAAATTGAAATTTTTTCCAAAAACTGAAAAAAGCAAAAGCCAAAAGAAAATCCTAGATGTCTCAATTTCTTRTCCAGCCAAAAAACTAGAATTCAGAATTAGATTTTCAGAAAAAGGGGGCGACGAAAAAAGTGTTTTCAGATGGGTCGGGCCGCCTCGTTCGGAACACAAAAACATGTTTTTGCAGTAGTGGTGGTAGAGACTATGTCGTGTATCTCCCTCCCCTCTGGCGGTCCCCCAATACAATGATAACTACTTTTTCTGACTGTCTGCGTCTCTGAGTTTTGATCTGCTCTCTCTCTTTCTCTCTATACTTTTCTCATTGAGGAGGCGCCCGGCGCCCGATTCAGTTGTTTTGTTTTGTTTTGTGAAGAGCGGGAAGATGAGAGAAGATTTTCAAGATTTCAAAAAGATTTGGGTCTCGCCACGAAGACTTACACGGTCTAGAAGGCGCGAGCGATCCTTGCAGGTTCCGTTCGAGCGTCGAGATTCTGAAAAATCAGAATTGGAAAAAAAACAAAAAATTCGTTTTTTTTCTCATTTTCAGAAAGGAGAGAATAACAAGAAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGCAAAATGTCAGACCTAGAAA</pcr_primer_p1>
		<pcr_primer_p2>TACCACCACTACTGCAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGCAAAATGTCAGACCTAGAAAAGAATATAAAAGGAATTCTCGAAAAATATGAAATTGAAATTTTTTCCAAAAACTGAAAAAAGCAAAAGCCAAAAGAAAATCCTAGATGTCTCAATTTCTTATCCAGCCAAAAAACTAGAATTCAGAATTAGATTTTCAGAAAAAGGGGGCGACGAAAAAAGTGTTTTCAGATGGGTCGGGCCGCCTCGTTCGGAACACAAAAACATGTTTTTGCAGTAGTGGTGGTA</canonical_amplicon>
		<polymorphic_amplicon>TAGCAAAATGTCAGACCTAGAAAAGAATATAAAAGGAATTCTCGAAAAATATGAAATTGAAATTTTTTCCAAAAACTGAAAAAAGCAAAAGCCAAAAGAAAATCCTAGATGTCTCAATTTCTTRTCCAGCCAAAAAACTAGAATTCAGAATTAGATTTTCAGAAAAAGGGGGCGACGAAAAAAGTGTTTTCAGATGGGTCGGGCCGCCTCGTTCGGAACACAAAAACATGTTTTTGCAGTAGTGGTGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12407</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>114403</contig_pos>
        <strand>+</strand>
        <context>ATCCAGCCAC[C/T]GCCACGATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATGCAATTGTAAAAGAGGTGGAAGAAGAGGAGGACATTGATCCAGCCAC</left_flank>
        <right_flank>GCCACGATTCCAAGCGACGTCGAGGTTCAGAAAGATACGGTAAGGATGAG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGAATAGACTGGTTATTGTATAATGTAAGAGTTACTGTAGAAAGAAAGGATTACTGTAGAACGGAAGACTACTATTTGCCACAGTGGCCTAGAAATTTCCAAAATTTTCCTCGGCCTCGAATGTTTGAAACTATCATTTATGACATCGGTCAGCGGTCACCGTAACTCAGCTGGTACCTGCAAAGGTGGGCCCACAAGTACATCTCCTCTAGGGGTTTACATGAAAGAAATTACGAAAAATAAATAAACAATGTTTCATGTTCCTCCACTCTTAATAACCCCTGAAAATTCAGCCCAAAACATCGAAGTCTCCCGAGAACGCGTTCCAGAAGCAATCCGCTACGCTGAACCATCCACAGCTGGACCAAACGTCGAGCAACACGAATTCGTTCCATTATCTCCAGTAAAAAGACGGGCGGCTCGAGCAGCTCCGATTCCAAAGAAACGAGATGCAATTGTAAAAGAGGTGGAAGAAGAGGAGGACATTGATCCAGCCACTGCCACGATTCCAAGCGACGTCGAGGTTCAGAAAGATACGGTAAGGATGAGGAATATGAAGATGTTTGCATGGAAGCTTCTCTAATTCTTTTTTCTTTTGTTTTAATTTTTTGAAATGTACTATAATTTGCATGATCTGTATGTCATAATAACGAATGAATAATGAATGAATTGCTTGTTGCATGCTGTTTTTTAAACCTTCAACTTTGAGCTCAATTATCTCGGCCCGTGTAAAAGGTATCAAACAGCTGTCAATTGATAAAATTTTACTCATGTTATGATAAACATTTTATCAGTTGAACAATTTTTCATACTACTTGTAAGAATCGTGATAATTTAGATGTTTCGCATGATTGTTTTTTTTGCATGAAGTTTTTGAAAGTTTTCTTCAATTTTTCGAGCTTTTTCTAGGTGGACCATCAATATTATGAAGCAGAAACCCATATTGGAAATGAGGAAATGGTCAATAAGTACTGGGTGAATGTGGAGCAGCTTATGAAG</canonical>
            <polymorphic>TAGAATAGACTGGTTATTGTATAATGTAAGAGTTACTGTAGAAAGAAAGGATTACTGTAGAACGGAAGACTACTATTTGCCACAGTGGCCTAGAAATTTCCAAAATTTTCCTCGGCCTCGAATGTTTGAAACTATCATTTATGACATCGGTCAGCGGTCACCGTAACTCAGCTGGTACCTGCAAAGGTGGGCCCACAAGTACATCTCCTCTAGGGGTTTACATGAAAGAAATTACGAAAAATAAATAAACAATGTTTCATGTTCCTCCACTCTTAATAACCCCTGAAAATTCAGCCCAAAACATCGAAGTCTCCCGAGAACGCGTTCCAGAAGCAATCCGCTACGCTGAACCATCCACAGCTGGACCAAACGTCGAGCAACACGAATTCGTTCCATTATCTCCAGTAAAAAGACGGGCGGCTCGAGCAGCTCCGATTCCAAAGAAACGAGATGCAATTGTAAAAGAGGTGGAAGAAGAGGAGGACATTGATCCAGCCACYGCCACGATTCCAAGCGACGTCGAGGTTCAGAAAGATACGGTAAGGATGAGGAATATGAAGATGTTTGCATGGAAGCTTCTCTAATTCTTTTTTCTTTTGTTTTAATTTTTTGAAATGTACTATAATTTGCATGATCTGTATGTCATAATAACGAATGAATAATGAATGAATTGCTTGTTGCATGCTGTTTTTTAAACCTTCAACTTTGAGCTCAATTATCTCGGCCCGTGTAAAAGGTATCAAACAGCTGTCAATTGATAAAATTTTACTCATGTTATGATAAACATTTTATCAGTTGAACAATTTTTCATACTACTTGTAAGAATCGTGATAATTTAGATGTTTCGCATGATTGTTTTTTTTGCATGAAGTTTTTGAAAGTTTTCTTCAATTTTTCGAGCTTTTTCTAGGTGGACCATCAATATTATGAAGCAGAAACCCATATTGGAAATGAGGAAATGGTCAATAAGTACTGGGTGAATGTGGAGCAGCTTATGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAGNNNCTG</site>
                <isoschizomers>
                    <enzyme>AlwNI</enzyme>
                    <enzyme>CaiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCATTATCTCCAGTAAAAAGA</pcr_primer_p1>
		<pcr_primer_p2>TGACATACAGATCATGCAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TTCCATTATCTCCAGTAAAAAGACGGGCGGCTCGAGCAGCTCCGATTCCAAAGAAACGAGATGCAATTGTAAAAGAGGTGGAAGAAGAGGAGGACATTGATCCAGCCACTGCCACGATTCCAAGCGACGTCGAGGTTCAGAAAGATACGGTAAGGATGAGGAATATGAAGATGTTTGCATGGAAGCTTCTCTAATTCTTTTTTCTTTTGTTTTAATTTTTTGAAATGTACTATAATTTGCATGATCTGTATGTCA</canonical_amplicon>
		<polymorphic_amplicon>TTCCATTATCTCCAGTAAAAAGACGGGCGGCTCGAGCAGCTCCGATTCCAAAGAAACGAGATGCAATTGTAAAAGAGGTGGAAGAAGAGGAGGACATTGATCCAGCCACYGCCACGATTCCAAGCGACGTCGAGGTTCAGAAAGATACGGTAAGGATGAGGAATATGAAGATGTTTGCATGGAAGCTTCTCTAATTCTTTTTTCTTTTGTTTTAATTTTTTGAAATGTACTATAATTTGCATGATCTGTATGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12408</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>114337</contig_pos>
        <strand>+</strand>
        <context>GAGCAGCTCC[A/G]ATTCCAAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATTCGTTCCATTATCTCCAGTAAAAAGACGGGCGGCTCGAGCAGCTCC</left_flank>
        <right_flank>ATTCCAAAGAAACGAGATGCAATTGTAAAAGAGGTGGAAGAAGAGGAGGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGATATGTGATTGTGAGTTGGGCTAATCAAATAGTAGGGGTTACTGTAGAATGGGAGGGCTACTGTAGAATAGACTGGTTATTGTATAATGTAAGAGTTACTGTAGAAAGAAAGGATTACTGTAGAACGGAAGACTACTATTTGCCACAGTGGCCTAGAAATTTCCAAAATTTTCCTCGGCCTCGAATGTTTGAAACTATCATTTATGACATCGGTCAGCGGTCACCGTAACTCAGCTGGTACCTGCAAAGGTGGGCCCACAAGTACATCTCCTCTAGGGGTTTACATGAAAGAAATTACGAAAAATAAATAAACAATGTTTCATGTTCCTCCACTCTTAATAACCCCTGAAAATTCAGCCCAAAACATCGAAGTCTCCCGAGAACGCGTTCCAGAAGCAATCCGCTACGCTGAACCATCCACAGCTGGACCAAACGTCGAGCAACACGAATTCGTTCCATTATCTCCAGTAAAAAGACGGGCGGCTCGAGCAGCTCCGATTCCAAAGAAACGAGATGCAATTGTAAAAGAGGTGGAAGAAGAGGAGGACATTGATCCAGCCACTGCCACGATTCCAAGCGACGTCGAGGTTCAGAAAGATACGGTAAGGATGAGGAATATGAAGATGTTTGCATGGAAGCTTCTCTAATTCTTTTTTCTTTTGTTTTAATTTTTTGAAATGTACTATAATTTGCATGATCTGTATGTCATAATAACGAATGAATAATGAATGAATTGCTTGTTGCATGCTGTTTTTTAAACCTTCAACTTTGAGCTCAATTATCTCGGCCCGTGTAAAAGGTATCAAACAGCTGTCAATTGATAAAATTTTACTCATGTTATGATAAACATTTTATCAGTTGAACAATTTTTCATACTACTTGTAAGAATCGTGATAATTTAGATGTTTCGCATGATTGTTTTTTTTGCATGAAGTTTTTGAAAGTTTTCTTCAATTTTTCGAGCTTTTTCTAGGTGGACCATCAATATTATGAAGCA</canonical>
            <polymorphic>AGGATATGTGATTGTGAGTTGGGCTAATCAAATAGTAGGGGTTACTGTAGAATGGGAGGGCTACTGTAGAATAGACTGGTTATTGTATAATGTAAGAGTTACTGTAGAAAGAAAGGATTACTGTAGAACGGAAGACTACTATTTGCCACAGTGGCCTAGAAATTTCCAAAATTTTCCTCGGCCTCGAATGTTTGAAACTATCATTTATGACATCGGTCAGCGGTCACCGTAACTCAGCTGGTACCTGCAAAGGTGGGCCCACAAGTACATCTCCTCTAGGGGTTTACATGAAAGAAATTACGAAAAATAAATAAACAATGTTTCATGTTCCTCCACTCTTAATAACCCCTGAAAATTCAGCCCAAAACATCGAAGTCTCCCGAGAACGCGTTCCAGAAGCAATCCGCTACGCTGAACCATCCACAGCTGGACCAAACGTCGAGCAACACGAATTCGTTCCATTATCTCCAGTAAAAAGACGGGCGGCTCGAGCAGCTCCRATTCCAAAGAAACGAGATGCAATTGTAAAAGAGGTGGAAGAAGAGGAGGACATTGATCCAGCCACTGCCACGATTCCAAGCGACGTCGAGGTTCAGAAAGATACGGTAAGGATGAGGAATATGAAGATGTTTGCATGGAAGCTTCTCTAATTCTTTTTTCTTTTGTTTTAATTTTTTGAAATGTACTATAATTTGCATGATCTGTATGTCATAATAACGAATGAATAATGAATGAATTGCTTGTTGCATGCTGTTTTTTAAACCTTCAACTTTGAGCTCAATTATCTCGGCCCGTGTAAAAGGTATCAAACAGCTGTCAATTGATAAAATTTTACTCATGTTATGATAAACATTTTATCAGTTGAACAATTTTTCATACTACTTGTAAGAATCGTGATAATTTAGATGTTTCGCATGATTGTTTTTTTTGCATGAAGTTTTTGAAAGTTTTCTTCAATTTTTCGAGCTTTTTCTAGGTGGACCATCAATATTATGAAGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>500 317 111 72</canonical_bands>
                <polymorphic_bands>572 317 111</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>499 405 96</canonical_bands>
                <polymorphic_bands>595 405</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 317 111 72</canonical_bands>
                <polymorphic_bands>572 317 111</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAATTCGTTCCATTATCTC</pcr_primer_p1>
		<pcr_primer_p2>TGCAAATTATAGTACATTTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGAATTCGTTCCATTATCTCCAGTAAAAAGACGGGCGGCTCGAGCAGCTCCGATTCCAAAGAAACGAGATGCAATTGTAAAAGAGGTGGAAGAAGAGGAGGACATTGATCCAGCCACTGCCACGATTCCAAGCGACGTCGAGGTTCAGAAAGATACGGTAAGGATGAGGAATATGAAGATGTTTGCATGGAAGCTTCTCTAATTCTTTTTTCTTTTGTTTTAATTTTTTGAAATGTACTATAATTTGCA</canonical_amplicon>
		<polymorphic_amplicon>CGAATTCGTTCCATTATCTCCAGTAAAAAGACGGGCGGCTCGAGCAGCTCCRATTCCAAAGAAACGAGATGCAATTGTAAAAGAGGTGGAAGAAGAGGAGGACATTGATCCAGCCACTGCCACGATTCCAAGCGACGTCGAGGTTCAGAAAGATACGGTAAGGATGAGGAATATGAAGATGTTTGCATGGAAGCTTCTCTAATTCTTTTTTCTTTTGTTTTAATTTTTTGAAATGTACTATAATTTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12409</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>113997</contig_pos>
        <strand>+</strand>
        <context>MGTGGCCTAG[A/C]AATTTCCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAAAGGATTACTGTAGAACGGAAGACTACTATTTGCCACAGTGGCCTAG</left_flank>
        <right_flank>AATTTCCAAAATTTTCCTCGGCCTCGAATGTTTGAAACTATCATTTATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCATGTGCCAAAAACACATGACATTTTATTTTCTCACATAAGGAAATGCGAGAATTTCCAGAGTTTTCCTCTAAATTTCCCATAAATCTACCAGATATTATTTTTGTTATTGATTTTAGATTTTGTTTTCAGATTCCTTATTATCGATTTTTTGTTACTTTGAGCTTGAAACCTATCACATGATTTATTTTTCGTAATCAGTTTAAAACTTCTGATCTTCATCTTTTTTGCCTAATCCGATTTTGCTAATTCGAAAACCTTCATGTTTTTTTCAGAACCAAAAATATCATAAAATGAGGAGTACGGCAATACTATTGCTGACGATTCTGCTTGTGTTGAGGATATGTGATTGTGAGTTGGGCTAATCAAATAGTAGGGGTTACTGTAGAATGGGAGGGCTACTGTAGAATAGACTGGTTATTGTATAATGTAAGAGTTACTGTAGAAAGAAAGGATTACTGTAGAACGGAAGACTACTATTTGCCACAGTGGCCTAGAAATTTCCAAAATTTTCCTCGGCCTCGAATGTTTGAAACTATCATTTATGACATCGGTCAGCGGTCACCGTAACTCAGCTGGTACCTGCAAAGGTGGGCCCACAAGTACATCTCCTCTAGGGGTTTACATGAAAGAAATTACGAAAAATAAATAAACAATGTTTCATGTTCCTCCACTCTTAATAACCCCTGAAAATTCAGCCCAAAACATCGAAGTCTCCCGAGAACGCGTTCCAGAAGCAATCCGCTACGCTGAACCATCCACAGCTGGACCAAACGTCGAGCAACACGAATTCGTTCCATTATCTCCAGTAAAAAGACGGGCGGCTCGAGCAGCTCCGATTCCAAAGAAACGAGATGCAATTGTAAAAGAGGTGGAAGAAGAGGAGGACATTGATCCAGCCACTGCCACGATTCCAAGCGACGTCGAGGTTCAGAAAGATACGGTAAGGATGAGGAATATGAAGATGTTTGCATGGAAGCTTCTCTAATTCTTTTTTC</canonical>
            <polymorphic>TATCATGTGCCAAAAACACATGACATTTTATTTTCTCACATAAGGAAATGCGAGAATTTCCAGAGTTTTCCTCTAAATTTCCCATAAATCTACCAGATATTATTTTTGTTATTGATTTTAGATTTTGTTTTCAGATTCCTTATTATCGATTTTTTGTTACTTTGAGCTTGAAACCTATCACATGATTTATTTTTCGTAATCAGTTTAAAACTTCTGATCTTCATCTTTTTTGCCTAATCCGATTTTGCTAATTCGAAAACCTTCATGTTTTTTTCAGAACCAAAAATATCATAAAATGAGGAGTACGGCAATACTATTGCTGACGATTCTGCTTGTGTTGAGGATATGTGATTGTGAGTTGGGCTAATCAAATAGTAGGGGTTACTGTAGAATGGGAGGGCTACTGTAGAATAGACTGGTTATTGTATAATGTAAGAGTTACTGTAGAAAGAAAGGATTACTGTAGAACGGAAGACTACTATTTGCCACAGTGGCCTAGMAATTTCCAAAATTTTCCTCGGCCTCGAATGTTTGAAACTATCATTTATGACATCGGTCAGCGGTCACCGTAACTCAGCTGGTACCTGCAAAGGTGGGCCCACAAGTACATCTCCTCTAGGGGTTTACATGAAAGAAATTACGAAAAATAAATAAACAATGTTTCATGTTCCTCCACTCTTAATAACCCCTGAAAATTCAGCCCAAAACATCGAAGTCTCCCGAGAACGCGTTCCAGAAGCAATCCGCTACGCTGAACCATCCACAGCTGGACCAAACGTCGAGCAACACGAATTCGTTCCATTATCTCCAGTAAAAAGACGGGCGGCTCGAGCAGCTCCGATTCCAAAGAAACGAGATGCAATTGTAAAAGAGGTGGAAGAAGAGGAGGACATTGATCCAGCCACTGCCACGATTCCAAGCGACGTCGAGGTTCAGAAAGATACGGTAAGGATGAGGAATATGAAGATGTTTGCATGGAAGCTTCTCTAATTCTTTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>425 210 184 97 54 21 9</canonical_bands>
                <polymorphic_bands>434 210 184 97 54 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGCTACTGTAGAATAGACTGGT</pcr_primer_p1>
		<pcr_primer_p2>TATTTTTCGTAATTTCTTTCATGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGGCTACTGTAGAATAGACTGGTTATTGTATAATGTAAGAGTTACTGTAGAAAGAAAGGATTACTGTAGAACGGAAGACTACTATTTGCCACAGTGGCCTAGAAATTTCCAAAATTTTCCTCGGCCTCGAATGTTTGAAACTATCATTTATGACATCGGTCAGCGGTCACCGTAACTCAGCTGGTACCTGCAAAGGTGGGCCCACAAGTACATCTCCTCTAGGGGTTTACATGAAAGAAATTACGAAAAATA</canonical_amplicon>
		<polymorphic_amplicon>GGGCTACTGTAGAATAGACTGGTTATTGTATAATGTAAGAGTTACTGTAGAAAGAAAGGATTACTGTAGAACGGAAGACTACTATTTGCCACAGTGGCCTAGMAATTTCCAAAATTTTCCTCGGCCTCGAATGTTTGAAACTATCATTTATGACATCGGTCAGCGGTCACCGTAACTCAGCTGGTACCTGCAAAGGTGGGCCCACAAGTACATCTCCTCTAGGGGTTTACATGAAAGAAATTACGAAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12410</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>178846</contig_pos>
        <strand>+</strand>
        <context>CTAAACATAA[C/T]CATTTTTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAATGGTGGATGCGTTTTTTGACATGAAACATTCGGTAGCTAAACATAA</left_flank>
        <right_flank>CATTTTTGAAAAAAAAACGGCACAAATTAAAAAAATAACCGATAAGGTGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGCAGAACTAAACGTTTGAAAATGAAAAAAAACTACTGTAAATAGACACATCCATTTTGAGTTCAATTATCTCGGCTCCTATAAGAGATATCAAACATTTGTAAACTAACAAAATGTTGGTGATAAGATGATAAATATTTTATCAGTTGGCGGATTTTTGATGTATCTCGCAGGAACCGAGATATATTAGCTCAAAGTGTAAGTAACGATATATTAAAGCGCGTACTTCCAAAGCAAGAGAAGCAGACAGTTTACAGCTGTTTGAATCGTTGCCCTACTTTGAGCTGAATTATCTCGGTTCCTATAAAAGATATCAAAATATTGTCTACTGATGAATTGTTGGTGATAATATGACAAACATTTTATCAGTAAAAAACGTTTTGATATCTGTCAAAAGAACAGAGATATGTGAGCTTGAAGTGCGCGAGGTGGTCGATTTGAGGGATGTGAATGGTGGATGCGTTTTTTGACATGAAACATTCGGTAGCTAAACATAATCATTTTTGAAAAAAAAACGGCACAAATTAAAAAAATAACCGATAAGGTGGTCTAAAATAGAACAGAGAATGCTGCAAAACATGAATTGTTGAGTGCAAAGCCATGGCGCCAAAGAAAAACGAGCAGATGTTCTGAAATGTTTTAAAAACTGGAAGAGAGCGCTAAGGAGACGTAGCACAAGACAACCAAAAAAAAATGAGGCGGTCAGGAATCGAAAAGAAAGATGTACTCTTCTCTTTTCTTATGATGAGACGGCTGGCACCGACGGTTCCACTGGAGCAACCACGTCTTGGCAAAAGAGAGAAAAAGTTCTGGGACACTGGAAAGAACAGATAAGAGAGAGAAAAGTGCGCTTGCTCGAGGAAACTAAACTTCGAAAAAAAATTGCTAGATCACATTTCAATGTGGAAGATCCCTAGTATCTGAGATAGACGAAAAACCCCTTTTTTATAATTTTGTTAGTCCACATTGTAGTTTCGTTCGTTCACATTGTATCTTTA</canonical>
            <polymorphic>ATTGCAGAACTAAACGTTTGAAAATGAAAAAAAACTACTGTAAATAGACACATCCATTTTGAGTTCAATTATCTCGGCTCCTATAAGAGATATCAAACATTTGTAAACTAACAAAATGTTGGTGATAAGATGATAAATATTTTATCAGTTGGCGGATTTTTGATGTATCTCGCAGGAACCGAGATATATTAGCTCAAAGTGTAAGTAACGATATATTAAAGCGCGTACTTCCAAAGCAAGAGAAGCAGACAGTTTACAGCTGTTTGAATCGTTGCCCTACTTTGAGCTGAATTATCTCGGTTCCTATAAAAGATATCAAAATATTGTCTACTGATGAATTGTTGGTGATAATATGACAAACATTTTATCAGTAAAAAACGTTTTGATATCTGTCAAAAGAACAGAGATATGTGAGCTTGAAGTGCGCGAGGTGGTCGATTTGAGGGATGTGAATGGTGGATGCGTTTTTTGACATGAAACATTCGGTAGCTAAACATAAYCATTTTTGAAAAAAAAACGGCACAAATTAAAAAAATAACCGATAAGGTGGTCTAAAATAGAACAGAGAATGCTGCAAAACATGAATTGTTGAGTGCAAAGCCATGGCGCCAAAGAAAAACGAGCAGATGTTCTGAAATGTTTTAAAAACTGGAAGAGAGCGCTAAGGAGACGTAGCACAAGACAACCAAAAAAAAATGAGGCGGTCAGGAATCGAAAAGAAAGATGTACTCTTCTCTTTTCTTATGATGAGACGGCTGGCACCGACGGTTCCACTGGAGCAACCACGTCTTGGCAAAAGAGAGAAAAAGTTCTGGGACACTGGAAAGAACAGATAAGAGAGAGAAAAGTGCGCTTGCTCGAGGAAACTAAACTTCGAAAAAAAATTGCTAGATCACATTTCAATGTGGAAGATCCCTAGTATCTGAGATAGACGAAAAACCCCTTTTTTATAATTTTGTTAGTCCACATTGTAGTTTCGTTCGTTCACATTGTATCTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTTACAGCTGTTTGAATCGT</pcr_primer_p1>
		<pcr_primer_p2>GCAGCATTCTCTGTTCTATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>325</pcr_amplicon_size>
		<canonical_amplicon>AGTTTACAGCTGTTTGAATCGTTGCCCTACTTTGAGCTGAATTATCTCGGTTCCTATAAAAGATATCAAAATATTGTCTACTGATGAATTGTTGGTGATAATATGACAAACATTTTATCAGTAAAAAACGTTTTGATATCTGTCAAAAGAACAGAGATATGTGAGCTTGAAGTGCGCGAGGTGGTCGATTTGAGGGATGTGAATGGTGGATGCGTTTTTTGACATGAAACATTCGGTAGCTAAACATAATCATTTTTGAAAAAAAAACGGCACAAATTAAAAAAATAACCGATAAGGTGGTCTAAAATAGAACAGAGAATGCTGC</canonical_amplicon>
		<polymorphic_amplicon>AGTTTACAGCTGTTTGAATCGTTGCCCTACTTTGAGCTGAATTATCTCGGTTCCTATAAAAGATATCAAAATATTGTCTACTGATGAATTGTTGGTGATAATATGACAAACATTTTATCAGTAAAAAACGTTTTGATATCTGTCAAAAGAACAGAGATATGTGAGCTTGAAGTGCGCGAGGTGGTCGATTTGAGGGATGTGAATGGTGGATGCGTTTTTTGACATGAAACATTCGGTAGCTAAACATAAYCATTTTTGAAAAAAAAACGGCACAAATTAAAAAAATAACCGATAAGGTGGTCTAAAATAGAACAGAGAATGCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12411</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>178893</contig_pos>
        <strand>+</strand>
        <context>AACCGATAAG[A/G]TGGTCTAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATCATTTTTGAAAAAAAAACGGCACAAATTAAAAAAATAACCGATAAG</left_flank>
        <right_flank>TGGTCTAAAATAGAACAGAGAATGCTGCAAAACATGAATTGTTGAGTGCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACATCCATTTTGAGTTCAATTATCTCGGCTCCTATAAGAGATATCAAACATTTGTAAACTAACAAAATGTTGGTGATAAGATGATAAATATTTTATCAGTTGGCGGATTTTTGATGTATCTCGCAGGAACCGAGATATATTAGCTCAAAGTGTAAGTAACGATATATTAAAGCGCGTACTTCCAAAGCAAGAGAAGCAGACAGTTTACAGCTGTTTGAATCGTTGCCCTACTTTGAGCTGAATTATCTCGGTTCCTATAAAAGATATCAAAATATTGTCTACTGATGAATTGTTGGTGATAATATGACAAACATTTTATCAGTAAAAAACGTTTTGATATCTGTCAAAAGAACAGAGATATGTGAGCTTGAAGTGCGCGAGGTGGTCGATTTGAGGGATGTGAATGGTGGATGCGTTTTTTGACATGAAACATTCGGTAGCTAAACATAATCATTTTTGAAAAAAAAACGGCACAAATTAAAAAAATAACCGATAAGGTGGTCTAAAATAGAACAGAGAATGCTGCAAAACATGAATTGTTGAGTGCAAAGCCATGGCGCCAAAGAAAAACGAGCAGATGTTCTGAAATGTTTTAAAAACTGGAAGAGAGCGCTAAGGAGACGTAGCACAAGACAACCAAAAAAAAATGAGGCGGTCAGGAATCGAAAAGAAAGATGTACTCTTCTCTTTTCTTATGATGAGACGGCTGGCACCGACGGTTCCACTGGAGCAACCACGTCTTGGCAAAAGAGAGAAAAAGTTCTGGGACACTGGAAAGAACAGATAAGAGAGAGAAAAGTGCGCTTGCTCGAGGAAACTAAACTTCGAAAAAAAATTGCTAGATCACATTTCAATGTGGAAGATCCCTAGTATCTGAGATAGACGAAAAACCCCTTTTTTATAATTTTGTTAGTCCACATTGTAGTTTCGTTCGTTCACATTGTATCTTTAACAGGAAACACGTCATTTCTCACTAGAGGCACTAGCTAGGGGTACAA</canonical>
            <polymorphic>ACACATCCATTTTGAGTTCAATTATCTCGGCTCCTATAAGAGATATCAAACATTTGTAAACTAACAAAATGTTGGTGATAAGATGATAAATATTTTATCAGTTGGCGGATTTTTGATGTATCTCGCAGGAACCGAGATATATTAGCTCAAAGTGTAAGTAACGATATATTAAAGCGCGTACTTCCAAAGCAAGAGAAGCAGACAGTTTACAGCTGTTTGAATCGTTGCCCTACTTTGAGCTGAATTATCTCGGTTCCTATAAAAGATATCAAAATATTGTCTACTGATGAATTGTTGGTGATAATATGACAAACATTTTATCAGTAAAAAACGTTTTGATATCTGTCAAAAGAACAGAGATATGTGAGCTTGAAGTGCGCGAGGTGGTCGATTTGAGGGATGTGAATGGTGGATGCGTTTTTTGACATGAAACATTCGGTAGCTAAACATAATCATTTTTGAAAAAAAAACGGCACAAATTAAAAAAATAACCGATAAGRTGGTCTAAAATAGAACAGAGAATGCTGCAAAACATGAATTGTTGAGTGCAAAGCCATGGCGCCAAAGAAAAACGAGCAGATGTTCTGAAATGTTTTAAAAACTGGAAGAGAGCGCTAAGGAGACGTAGCACAAGACAACCAAAAAAAAATGAGGCGGTCAGGAATCGAAAAGAAAGATGTACTCTTCTCTTTTCTTATGATGAGACGGCTGGCACCGACGGTTCCACTGGAGCAACCACGTCTTGGCAAAAGAGAGAAAAAGTTCTGGGACACTGGAAAGAACAGATAAGAGAGAGAAAAGTGCGCTTGCTCGAGGAAACTAAACTTCGAAAAAAAATTGCTAGATCACATTTCAATGTGGAAGATCCCTAGTATCTGAGATAGACGAAAAACCCCTTTTTTATAATTTTGTTAGTCCACATTGTAGTTTCGTTCGTTCACATTGTATCTTTAACAGGAAACACGTCATTTCTCACTAGAGGCACTAGCTAGGGGTACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>146 84 82 77 74 66 64 59 46 45 34 31 27 23 21 18 16 12 12 12 12 11 9 9 7 3</canonical_bands>
                <polymorphic_bands>146 84 82 77 74 73 66 64 59 45 34 31 23 21 18 16 12 12 12 12 11 9 9 7 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAACATTCGGTAGCTAAACATA</pcr_primer_p1>
		<pcr_primer_p2>TCTTTCTTTTCGATTCCTGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAACATTCGGTAGCTAAACATAATCATTTTTGAAAAAAAAACGGCACAAATTAAAAAAATAACCGATAAGGTGGTCTAAAATAGAACAGAGAATGCTGCAAAACATGAATTGTTGAGTGCAAAGCCATGGCGCCAAAGAAAAACGAGCAGATGTTCTGAAATGTTTTAAAAACTGGAAGAGAGCGCTAAGGAGACGTAGCACAAGACAACCAAAAAAAAATGAGGCGGTCAGGAATCGAAAAGAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GAAACATTCGGTAGCTAAACATAATCATTTTTGAAAAAAAAACGGCACAAATTAAAAAAATAACCGATAAGRTGGTCTAAAATAGAACAGAGAATGCTGCAAAACATGAATTGTTGAGTGCAAAGCCATGGCGCCAAAGAAAAACGAGCAGATGTTCTGAAATGTTTTAAAAACTGGAAGAGAGCGCTAAGGAGACGTAGCACAAGACAACCAAAAAAAAATGAGGCGGTCAGGAATCGAAAAGAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12412</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>231306</contig_pos>
        <strand>+</strand>
        <context>AATTTTCTCG[A/C]AATTTTTCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAATTAGAGGTTAATTAGAGATGGGGGAAGTGAAAAAAATAATTTTCTCG</left_flank>
        <right_flank>AATTTTTCTTCTTGAGGAGTTGAACTTGTAGGCAAACGTTAGAGGTGCCG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATTTCAGCATTGGCAATAGTCTGAAAATAACTTCCTAGACCAATTAAATCATTCCTGCTTACCTCTCCAACCAATCCTTTGGTCTTCCCTGAGAGTATTTCCCATGCTCCAGGGCAAATGTAGCGGGATCATGAGACTGAAGGAATGGCTCGACTAACTTCAGAGTTCCAGTTTTGATAACAGCTGGTTCGAATTCTTTGACACTTGCCAGCGTACAGGTCGCCAGACAAGCATAGTAGCGGGTTACATCGTCTGCCTGACTAGCCAGAAAGAATAACCAGTCTGGAACTTTCTTCTGGATAATCTTCTTTTTTCCTTCGAAACAGGAGTAGAGAGCGAGGTTGGCCATTCCAAGAGCAGCATGTCGGAGGATGTCAGGACAGCCAGTGGCTCGTTTGAAGGTGAGAATGATGTGCTCGATGACGTCAGACTCGATTAGGCTGAAAATAATTAGAGGTTAATTAGAGATGGGGGAAGTGAAAAAAATAATTTTCTCGAAATTTTTCTTCTTGAGGAGTTGAACTTGTAGGCAAACGTTAGAGGTGCCGCGCTGCTACCGCAGCTTGCCGAACGCTCCTATTCTTGCACTTTGAGCTTAATTATCTAGGTTGATATGAGAAATATCAAAAATTTGTCAATTGATAAAATGTTTGTCTTGATTTATAAATATTTTGACAGTTGACAGATTTTTGATATCTCTTACAGAAATCGAGATAATTGAGCTCAAAAAGATGCTAAATTTGAAAGATCATGAATCTCTACATAAGCCTCTTAACCCAAGTTCTACTGGATCACAATTTAAGGAGACCTACCCAATTTCAAGATGTTTAGATTCTTAAGGCTTCTAGAAAGTTATTAAACACCGAATTTCCCATTAGCCTAACCTGTGATGCCCTGGAAGGTCCAGGATAACGGAAAGGTCAAACTGAAACATTACAATAAAACCATGTTAATCATAATGGCATCGACCGTACCACATGCTGAGGTAAGATACTCGT</canonical>
            <polymorphic>CGATTTCAGCATTGGCAATAGTCTGAAAATAACTTCCTAGACCAATTAAATCATTCCTGCTTACCTCTCCAACCAATCCTTTGGTCTTCCCTGAGAGTATTTCCCATGCTCCAGGGCAAATGTAGCGGGATCATGAGACTGAAGGAATGGCTCGACTAACTTCAGAGTTCCAGTTTTGATAACAGCTGGTTCGAATTCTTTGACACTTGCCAGCGTACAGGTCGCCAGACAAGCATAGTAGCGGGTTACATCGTCTGCCTGACTAGCCAGAAAGAATAACCAGTCTGGAACTTTCTTCTGGATAATCTTCTTTTTTCCTTCGAAACAGGAGTAGAGAGCGAGGTTGGCCATTCCAAGAGCAGCATGTCGGAGGATGTCAGGACAGCCAGTGGCTCGTTTGAAGGTGAGAATGATGTGCTCGATGACGTCAGACTCGATTAGGCTGAAAATAATTAGAGGTTAATTAGAGATGGGGGAAGTGAAAAAAATAATTTTCTCGMAATTTTTCTTCTTGAGGAGTTGAACTTGTAGGCAAACGTTAGAGGTGCCGCGCTGCTACCGCAGCTTGCCGAACGCTCCTATTCTTGCACTTTGAGCTTAATTATCTAGGTTGATATGAGAAATATCAAAAATTTGTCAATTGATAAAATGTTTGTCTTGATTTATAAATATTTTGACAGTTGACAGATTTTTGATATCTCTTACAGAAATCGAGATAATTGAGCTCAAAAAGATGCTAAATTTGAAAGATCATGAATCTCTACATAAGCCTCTTAACCCAAGTTCTACTGGATCACAATTTAAGGAGACCTACCCAATTTCAAGATGTTTAGATTCTTAAGGCTTCTAGAAAGTTATTAAACACCGAATTTCCCATTAGCCTAACCTGTGATGCCCTGGAAGGTCCAGGATAACGGAAAGGTCAAACTGAAACATTACAATAAAACCATGTTAATCATAATGGCATCGACCGTACCACATGCTGAGGTAAGATACTCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>307 193 133 130 128 109</canonical_bands>
                <polymorphic_bands>437 193 133 128 109</polymorphic_bands>
            </assay>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>256 214 153 129 99 63 39 32 15</canonical_bands>
                <polymorphic_bands>277 256 153 129 99 39 32 15</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>153 153 146 132 118 80 70 55 40 25 15 13</canonical_bands>
                <polymorphic_bands>153 153 146 133 132 80 70 55 40 25 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGGCTGAAAATAATTAGAGGTT</pcr_primer_p1>
		<pcr_primer_p2>TGATCTTTCAAATTTAGCATCTT</pcr_primer_p2>
		<pcr_amplicon_size>316</pcr_amplicon_size>
		<canonical_amplicon>TTAGGCTGAAAATAATTAGAGGTTAATTAGAGATGGGGGAAGTGAAAAAAATAATTTTCTCGAAATTTTTCTTCTTGAGGAGTTGAACTTGTAGGCAAACGTTAGAGGTGCCGCGCTGCTACCGCAGCTTGCCGAACGCTCCTATTCTTGCACTTTGAGCTTAATTATCTAGGTTGATATGAGAAATATCAAAAATTTGTCAATTGATAAAATGTTTGTCTTGATTTATAAATATTTTGACAGTTGACAGATTTTTGATATCTCTTACAGAAATCGAGATAATTGAGCTCAAAAAGATGCTAAATTTGAAAGATCA</canonical_amplicon>
		<polymorphic_amplicon>TTAGGCTGAAAATAATTAGAGGTTAATTAGAGATGGGGGAAGTGAAAAAAATAATTTTCTCGMAATTTTTCTTCTTGAGGAGTTGAACTTGTAGGCAAACGTTAGAGGTGCCGCGCTGCTACCGCAGCTTGCCGAACGCTCCTATTCTTGCACTTTGAGCTTAATTATCTAGGTTGATATGAGAAATATCAAAAATTTGTCAATTGATAAAATGTTTGTCTTGATTTATAAATATTTTGACAGTTGACAGATTTTTGATATCTCTTACAGAAATCGAGATAATTGAGCTCAAAAAGATGCTAAATTTGAAAGATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12413</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>231368</contig_pos>
        <strand>+</strand>
        <context>GCTGCTACCG[C/G]AGCTTGCCGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTGAGGAGTTGAACTTGTAGGCAAACGTTAGAGGTGCCGCGCTGCTACCG</left_flank>
        <right_flank>AGCTTGCCGAACGCTCCTATTCTTGCACTTTGAGCTTAATTATCTAGGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTCTCCAACCAATCCTTTGGTCTTCCCTGAGAGTATTTCCCATGCTCCAGGGCAAATGTAGCGGGATCATGAGACTGAAGGAATGGCTCGACTAACTTCAGAGTTCCAGTTTTGATAACAGCTGGTTCGAATTCTTTGACACTTGCCAGCGTACAGGTCGCCAGACAAGCATAGTAGCGGGTTACATCGTCTGCCTGACTAGCCAGAAAGAATAACCAGTCTGGAACTTTCTTCTGGATAATCTTCTTTTTTCCTTCGAAACAGGAGTAGAGAGCGAGGTTGGCCATTCCAAGAGCAGCATGTCGGAGGATGTCAGGACAGCCAGTGGCTCGTTTGAAGGTGAGAATGATGTGCTCGATGACGTCAGACTCGATTAGGCTGAAAATAATTAGAGGTTAATTAGAGATGGGGGAAGTGAAAAAAATAATTTTCTCGAAATTTTTCTTCTTGAGGAGTTGAACTTGTAGGCAAACGTTAGAGGTGCCGCGCTGCTACCGCAGCTTGCCGAACGCTCCTATTCTTGCACTTTGAGCTTAATTATCTAGGTTGATATGAGAAATATCAAAAATTTGTCAATTGATAAAATGTTTGTCTTGATTTATAAATATTTTGACAGTTGACAGATTTTTGATATCTCTTACAGAAATCGAGATAATTGAGCTCAAAAAGATGCTAAATTTGAAAGATCATGAATCTCTACATAAGCCTCTTAACCCAAGTTCTACTGGATCACAATTTAAGGAGACCTACCCAATTTCAAGATGTTTAGATTCTTAAGGCTTCTAGAAAGTTATTAAACACCGAATTTCCCATTAGCCTAACCTGTGATGCCCTGGAAGGTCCAGGATAACGGAAAGGTCAAACTGAAACATTACAATAAAACCATGTTAATCATAATGGCATCGACCGTACCACATGCTGAGGTAAGATACTCGTTCAGACTCAATTTCTACCCGATTCCGTTTTCAGTGCATTATCATCAATGGCACCGAAACTTG</canonical>
            <polymorphic>ACCTCTCCAACCAATCCTTTGGTCTTCCCTGAGAGTATTTCCCATGCTCCAGGGCAAATGTAGCGGGATCATGAGACTGAAGGAATGGCTCGACTAACTTCAGAGTTCCAGTTTTGATAACAGCTGGTTCGAATTCTTTGACACTTGCCAGCGTACAGGTCGCCAGACAAGCATAGTAGCGGGTTACATCGTCTGCCTGACTAGCCAGAAAGAATAACCAGTCTGGAACTTTCTTCTGGATAATCTTCTTTTTTCCTTCGAAACAGGAGTAGAGAGCGAGGTTGGCCATTCCAAGAGCAGCATGTCGGAGGATGTCAGGACAGCCAGTGGCTCGTTTGAAGGTGAGAATGATGTGCTCGATGACGTCAGACTCGATTAGGCTGAAAATAATTAGAGGTTAATTAGAGATGGGGGAAGTGAAAAAAATAATTTTCTCGAAATTTTTCTTCTTGAGGAGTTGAACTTGTAGGCAAACGTTAGAGGTGCCGCGCTGCTACCGSAGCTTGCCGAACGCTCCTATTCTTGCACTTTGAGCTTAATTATCTAGGTTGATATGAGAAATATCAAAAATTTGTCAATTGATAAAATGTTTGTCTTGATTTATAAATATTTTGACAGTTGACAGATTTTTGATATCTCTTACAGAAATCGAGATAATTGAGCTCAAAAAGATGCTAAATTTGAAAGATCATGAATCTCTACATAAGCCTCTTAACCCAAGTTCTACTGGATCACAATTTAAGGAGACCTACCCAATTTCAAGATGTTTAGATTCTTAAGGCTTCTAGAAAGTTATTAAACACCGAATTTCCCATTAGCCTAACCTGTGATGCCCTGGAAGGTCCAGGATAACGGAAAGGTCAAACTGAAACATTACAATAAAACCATGTTAATCATAATGGCATCGACCGTACCACATGCTGAGGTAAGATACTCGTTCAGACTCAATTTCTACCCGATTCCGTTTTCAGTGCATTATCATCAATGGCACCGAAACTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 486 11</canonical_bands>
                <polymorphic_bands>514 486</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>469 214 108 81 60 35 33</canonical_bands>
                <polymorphic_bands>469 217 108 81 60 33 32</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>498 300 188 9 5</canonical_bands>
                <polymorphic_bands>507 300 188 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>501 297 193 9</canonical_bands>
                <polymorphic_bands>510 297 193</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTTGAGGAGTTGAACTTGTAG</pcr_primer_p1>
		<pcr_primer_p2>ATTCATGATCTTTCAAATTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTTGAGGAGTTGAACTTGTAGGCAAACGTTAGAGGTGCCGCGCTGCTACCGCAGCTTGCCGAACGCTCCTATTCTTGCACTTTGAGCTTAATTATCTAGGTTGATATGAGAAATATCAAAAATTTGTCAATTGATAAAATGTTTGTCTTGATTTATAAATATTTTGACAGTTGACAGATTTTTGATATCTCTTACAGAAATCGAGATAATTGAGCTCAAAAAGATGCTAAATTTGAAAGATCATGAAT</canonical_amplicon>
		<polymorphic_amplicon>TTCTTGAGGAGTTGAACTTGTAGGCAAACGTTAGAGGTGCCGCGCTGCTACCGSAGCTTGCCGAACGCTCCTATTCTTGCACTTTGAGCTTAATTATCTAGGTTGATATGAGAAATATCAAAAATTTGTCAATTGATAAAATGTTTGTCTTGATTTATAAATATTTTGACAGTTGACAGATTTTTGATATCTCTTACAGAAATCGAGATAATTGAGCTCAAAAAGATGCTAAATTTGAAAGATCATGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12414</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>231603</contig_pos>
        <strand>+</strand>
        <context>TACTGGATCA[C/T]AATTTAAGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGATCATGAATCTCTACATAAGCCTCTTAACCCAAGTTCTACTGGATCA</left_flank>
        <right_flank>AATTTAAGGAGACCTACCCAATTTCAAGATGTTTAGATTCTTAAGGCTTC</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGGATAATCTTCTTTTTTCCTTCGAAACAGGAGTAGAGAGCGAGGTTGGCCATTCCAAGAGCAGCATGTCGGAGGATGTCAGGACAGCCAGTGGCTCGTTTGAAGGTGAGAATGATGTGCTCGATGACGTCAGACTCGATTAGGCTGAAAATAATTAGAGGTTAATTAGAGATGGGGGAAGTGAAAAAAATAATTTTCTCGAAATTTTTCTTCTTGAGGAGTTGAACTTGTAGGCAAACGTTAGAGGTGCCGCGCTGCTACCGCAGCTTGCCGAACGCTCCTATTCTTGCACTTTGAGCTTAATTATCTAGGTTGATATGAGAAATATCAAAAATTTGTCAATTGATAAAATGTTTGTCTTGATTTATAAATATTTTGACAGTTGACAGATTTTTGATATCTCTTACAGAAATCGAGATAATTGAGCTCAAAAAGATGCTAAATTTGAAAGATCATGAATCTCTACATAAGCCTCTTAACCCAAGTTCTACTGGATCACAATTTAAGGAGACCTACCCAATTTCAAGATGTTTAGATTCTTAAGGCTTCTAGAAAGTTATTAAACACCGAATTTCCCATTAGCCTAACCTGTGATGCCCTGGAAGGTCCAGGATAACGGAAAGGTCAAACTGAAACATTACAATAAAACCATGTTAATCATAATGGCATCGACCGTACCACATGCTGAGGTAAGATACTCGTTCAGACTCAATTTCTACCCGATTCCGTTTTCAGTGCATTATCATCAATGGCACCGAAACTTGTGATTGGACTACTACGCATAAATCTCGTACCATCTCCGTCCTATTGCTCATCATTATTCTCGGCTCGATTTGATTTTGCCTTATGTTCAACGCCATCGTCACAGCGGTTATTTACAATAAGCAACAGGAAAATGGTTGGAAATCTAATCAAATCTTCTACATCTCCAGCTAGGACAGCTCAGAGTAATCATTTGGAAATCGAAATTCCGAATAAGGAAAAGAAAAATGATTTGAG</canonical>
            <polymorphic>CTGGATAATCTTCTTTTTTCCTTCGAAACAGGAGTAGAGAGCGAGGTTGGCCATTCCAAGAGCAGCATGTCGGAGGATGTCAGGACAGCCAGTGGCTCGTTTGAAGGTGAGAATGATGTGCTCGATGACGTCAGACTCGATTAGGCTGAAAATAATTAGAGGTTAATTAGAGATGGGGGAAGTGAAAAAAATAATTTTCTCGAAATTTTTCTTCTTGAGGAGTTGAACTTGTAGGCAAACGTTAGAGGTGCCGCGCTGCTACCGCAGCTTGCCGAACGCTCCTATTCTTGCACTTTGAGCTTAATTATCTAGGTTGATATGAGAAATATCAAAAATTTGTCAATTGATAAAATGTTTGTCTTGATTTATAAATATTTTGACAGTTGACAGATTTTTGATATCTCTTACAGAAATCGAGATAATTGAGCTCAAAAAGATGCTAAATTTGAAAGATCATGAATCTCTACATAAGCCTCTTAACCCAAGTTCTACTGGATCAYAATTTAAGGAGACCTACCCAATTTCAAGATGTTTAGATTCTTAAGGCTTCTAGAAAGTTATTAAACACCGAATTTCCCATTAGCCTAACCTGTGATGCCCTGGAAGGTCCAGGATAACGGAAAGGTCAAACTGAAACATTACAATAAAACCATGTTAATCATAATGGCATCGACCGTACCACATGCTGAGGTAAGATACTCGTTCAGACTCAATTTCTACCCGATTCCGTTTTCAGTGCATTATCATCAATGGCACCGAAACTTGTGATTGGACTACTACGCATAAATCTCGTACCATCTCCGTCCTATTGCTCATCATTATTCTCGGCTCGATTTGATTTTGCCTTATGTTCAACGCCATCGTCACAGCGGTTATTTACAATAAGCAACAGGAAAATGGTTGGAAATCTAATCAAATCTTCTACATCTCCAGCTAGGACAGCTCAGAGTAATCATTTGGAAATCGAAATTCCGAATAAGGAAAAGAAAAATGATTTGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>207 134 99 94 87 68 66 64 57 42 27 17 15 12 11</canonical_bands>
                <polymorphic_bands>275 134 99 94 87 66 64 57 42 27 17 15 12 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGATGCTAAATTTGAAAGATCA</pcr_primer_p1>
		<pcr_primer_p2>GTCGATGCCATTATGATTAAC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>AAGATGCTAAATTTGAAAGATCATGAATCTCTACATAAGCCTCTTAACCCAAGTTCTACTGGATCACAATTTAAGGAGACCTACCCAATTTCAAGATGTTTAGATTCTTAAGGCTTCTAGAAAGTTATTAAACACCGAATTTCCCATTAGCCTAACCTGTGATGCCCTGGAAGGTCCAGGATAACGGAAAGGTCAAACTGAAACATTACAATAAAACCATGTTAATCATAATGGCATCGAC</canonical_amplicon>
		<polymorphic_amplicon>AAGATGCTAAATTTGAAAGATCATGAATCTCTACATAAGCCTCTTAACCCAAGTTCTACTGGATCAYAATTTAAGGAGACCTACCCAATTTCAAGATGTTTAGATTCTTAAGGCTTCTAGAAAGTTATTAAACACCGAATTTCCCATTAGCCTAACCTGTGATGCCCTGGAAGGTCCAGGATAACGGAAAGGTCAAACTGAAACATTACAATAAAACCATGTTAATCATAATGGCATCGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12415</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>231645</contig_pos>
        <strand>+</strand>
        <context>TTTAGATTCT[C/T]AAGGCTTCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGGATCACAATTTAAGGAGACCTACCCAATTTCAAGATGTTTAGATTCT</left_flank>
        <right_flank>AAGGCTTCTAGAAAGTTATTAAACACCGAATTTCCCATTAGCCTAACCTG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGGTTGGCCATTCCAAGAGCAGCATGTCGGAGGATGTCAGGACAGCCAGTGGCTCGTTTGAAGGTGAGAATGATGTGCTCGATGACGTCAGACTCGATTAGGCTGAAAATAATTAGAGGTTAATTAGAGATGGGGGAAGTGAAAAAAATAATTTTCTCGAAATTTTTCTTCTTGAGGAGTTGAACTTGTAGGCAAACGTTAGAGGTGCCGCGCTGCTACCGCAGCTTGCCGAACGCTCCTATTCTTGCACTTTGAGCTTAATTATCTAGGTTGATATGAGAAATATCAAAAATTTGTCAATTGATAAAATGTTTGTCTTGATTTATAAATATTTTGACAGTTGACAGATTTTTGATATCTCTTACAGAAATCGAGATAATTGAGCTCAAAAAGATGCTAAATTTGAAAGATCATGAATCTCTACATAAGCCTCTTAACCCAAGTTCTACTGGATCACAATTTAAGGAGACCTACCCAATTTCAAGATGTTTAGATTCTTAAGGCTTCTAGAAAGTTATTAAACACCGAATTTCCCATTAGCCTAACCTGTGATGCCCTGGAAGGTCCAGGATAACGGAAAGGTCAAACTGAAACATTACAATAAAACCATGTTAATCATAATGGCATCGACCGTACCACATGCTGAGGTAAGATACTCGTTCAGACTCAATTTCTACCCGATTCCGTTTTCAGTGCATTATCATCAATGGCACCGAAACTTGTGATTGGACTACTACGCATAAATCTCGTACCATCTCCGTCCTATTGCTCATCATTATTCTCGGCTCGATTTGATTTTGCCTTATGTTCAACGCCATCGTCACAGCGGTTATTTACAATAAGCAACAGGAAAATGGTTGGAAATCTAATCAAATCTTCTACATCTCCAGCTAGGACAGCTCAGAGTAATCATTTGGAAATCGAAATTCCGAATAAGGAAAAGAAAAATGATTTGAGCAGTGATGAAAGTGAAGATGGATCTACTGAGAGGGATGAAGA</canonical>
            <polymorphic>GAGGTTGGCCATTCCAAGAGCAGCATGTCGGAGGATGTCAGGACAGCCAGTGGCTCGTTTGAAGGTGAGAATGATGTGCTCGATGACGTCAGACTCGATTAGGCTGAAAATAATTAGAGGTTAATTAGAGATGGGGGAAGTGAAAAAAATAATTTTCTCGAAATTTTTCTTCTTGAGGAGTTGAACTTGTAGGCAAACGTTAGAGGTGCCGCGCTGCTACCGCAGCTTGCCGAACGCTCCTATTCTTGCACTTTGAGCTTAATTATCTAGGTTGATATGAGAAATATCAAAAATTTGTCAATTGATAAAATGTTTGTCTTGATTTATAAATATTTTGACAGTTGACAGATTTTTGATATCTCTTACAGAAATCGAGATAATTGAGCTCAAAAAGATGCTAAATTTGAAAGATCATGAATCTCTACATAAGCCTCTTAACCCAAGTTCTACTGGATCACAATTTAAGGAGACCTACCCAATTTCAAGATGTTTAGATTCTYAAGGCTTCTAGAAAGTTATTAAACACCGAATTTCCCATTAGCCTAACCTGTGATGCCCTGGAAGGTCCAGGATAACGGAAAGGTCAAACTGAAACATTACAATAAAACCATGTTAATCATAATGGCATCGACCGTACCACATGCTGAGGTAAGATACTCGTTCAGACTCAATTTCTACCCGATTCCGTTTTCAGTGCATTATCATCAATGGCACCGAAACTTGTGATTGGACTACTACGCATAAATCTCGTACCATCTCCGTCCTATTGCTCATCATTATTCTCGGCTCGATTTGATTTTGCCTTATGTTCAACGCCATCGTCACAGCGGTTATTTACAATAAGCAACAGGAAAATGGTTGGAAATCTAATCAAATCTTCTACATCTCCAGCTAGGACAGCTCAGAGTAATCATTTGGAAATCGAAATTCCGAATAAGGAAAAGAAAAATGATTTGAGCAGTGATGAAAGTGAAGATGGATCTACTGAGAGGGATGAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTTAAG</site>
                <isoschizomers>
                    <enzyme>AflII</enzyme>
                    <enzyme>BfrI</enzyme>
                    <enzyme>BspTI</enzyme>
                    <enzyme>Bst98I</enzyme>
                    <enzyme>MspCI</enzyme>
                    <enzyme>Vha464I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>387 176 138 121 94 37 27 20</canonical_bands>
                <polymorphic_bands>387 176 138 121 94 57 27</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>502 326 172</canonical_bands>
                <polymorphic_bands>828 172</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCTCTACATAAGCCTCTTAACC</pcr_primer_p1>
		<pcr_primer_p2>TCTGAACGAGTATCTTACCTCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCTCTACATAAGCCTCTTAACCCAAGTTCTACTGGATCACAATTTAAGGAGACCTACCCAATTTCAAGATGTTTAGATTCTTAAGGCTTCTAGAAAGTTATTAAACACCGAATTTCCCATTAGCCTAACCTGTGATGCCCTGGAAGGTCCAGGATAACGGAAAGGTCAAACTGAAACATTACAATAAAACCATGTTAATCATAATGGCATCGACCGTACCACATGCTGAGGTAAGATACTCGTTCAGA</canonical_amplicon>
		<polymorphic_amplicon>AATCTCTACATAAGCCTCTTAACCCAAGTTCTACTGGATCACAATTTAAGGAGACCTACCCAATTTCAAGATGTTTAGATTCTYAAGGCTTCTAGAAAGTTATTAAACACCGAATTTCCCATTAGCCTAACCTGTGATGCCCTGGAAGGTCCAGGATAACGGAAAGGTCAAACTGAAACATTACAATAAAACCATGTTAATCATAATGGCATCGACCGTACCACATGCTGAGGTAAGATACTCGTTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12416</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>234241</contig_pos>
        <strand>+</strand>
        <context>GAAAAGTTAT[A/G]AGCAGATTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTTGGCCGTTTTCGAGCAACTTAAGCCATTTTTGAGCCGAAAAGTTAT</left_flank>
        <right_flank>AGCAGATTTTTGTCCGTTTTTCGTCCGTTTAGGCAATTTCAGACTGATTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGTTTGGTAGATACGCTCTATTGAGAATCTATAGCTCAGCTCGTTGAGGCACTAAGCCACTAAAACTTTGCTTAGGAATTCGACTCCGGGGATTCTAACAAAGAAGCCAATTCTTATAAAATAATAGTTTCAGCATCTCCAGCAGCTAGTCCAGCTTCCGCTCCAGATGTTAACCATAAGGCTGCTTCGAAGAAGAGCAAGAAGAAGTCAAAGACGGGAGGTACAAGTGCAATGAATTCTGAACCCTCAAAACCCGAGGAAGAGGATCCAGGACTTGGAGCTTAACTTGGTTTTTTTTATTTCTAAAATCCGCCCTTTCTACTCGTTTGGTTAAATAAATCCATTTGATATAGTGATAGCTAGATTTGACTTTTTGACTCCGACAATTTTTGTCAGGCAAAAGCAACTTTCCAATAAATTTAGGAATTTTAAATGTTTGTTTTGATTAGTTTGGCCGTTTTCGAGCAACTTAAGCCATTTTTGAGCCGAAAAGTTATGAGCAGATTTTTGTCCGTTTTTCGTCCGTTTAGGCAATTTCAGACTGATTCTGTCATTTCAGAATTATTTGAAGTTATTCATTGCTTTCTCCAAGTTTTAGTACCCTTTTTTCTTATCTCCAAAAGTTTTTATTTTCTTTAAAAATTCGCCGAAATTCTTAACCATGCTAAAGGGTTAGGTCACTAAACCAGTGGTCTCTCTTGTAGACTACTTGATTGTTGGATTGTCTCAAAACGTTCATTACACTGTATGATACAAAATGGCGGTAAGTTCGAAGTCTCTGTGCTCAGTTCCTATAGGAAATATCGAACATTTGTCAAGTGATACAATTTTTACCAAAATATGATCAGTATTTTACCAGTTGACAGATTCTTGATATCTCTTACAGGAACTGAGATCGTTAAGCTGAACAAATATTTCTTCAGAAAGCGACCACTTTGGACCCAGACATCGTAGGGAGCAGTTTTTTCATCTGGATTTCAATTATTGTCACTATCTGT</canonical>
            <polymorphic>AGAGTTTGGTAGATACGCTCTATTGAGAATCTATAGCTCAGCTCGTTGAGGCACTAAGCCACTAAAACTTTGCTTAGGAATTCGACTCCGGGGATTCTAACAAAGAAGCCAATTCTTATAAAATAATAGTTTCAGCATCTCCAGCAGCTAGTCCAGCTTCCGCTCCAGATGTTAACCATAAGGCTGCTTCGAAGAAGAGCAAGAAGAAGTCAAAGACGGGAGGTACAAGTGCAATGAATTCTGAACCCTCAAAACCCGAGGAAGAGGATCCAGGACTTGGAGCTTAACTTGGTTTTTTTTATTTCTAAAATCCGCCCTTTCTACTCGTTTGGTTAAATAAATCCATTTGATATAGTGATAGCTAGATTTGACTTTTTGACTCCGACAATTTTTGTCAGGCAAAAGCAACTTTCCAATAAATTTAGGAATTTTAAATGTTTGTTTTGATTAGTTTGGCCGTTTTCGAGCAACTTAAGCCATTTTTGAGCCGAAAAGTTATRAGCAGATTTTTGTCCGTTTTTCGTCCGTTTAGGCAATTTCAGACTGATTCTGTCATTTCAGAATTATTTGAAGTTATTCATTGCTTTCTCCAAGTTTTAGTACCCTTTTTTCTTATCTCCAAAAGTTTTTATTTTCTTTAAAAATTCGCCGAAATTCTTAACCATGCTAAAGGGTTAGGTCACTAAACCAGTGGTCTCTCTTGTAGACTACTTGATTGTTGGATTGTCTCAAAACGTTCATTACACTGTATGATACAAAATGGCGGTAAGTTCGAAGTCTCTGTGCTCAGTTCCTATAGGAAATATCGAACATTTGTCAAGTGATACAATTTTTACCAAAATATGATCAGTATTTTACCAGTTGACAGATTCTTGATATCTCTTACAGGAACTGAGATCGTTAAGCTGAACAAATATTTCTTCAGAAAGCGACCACTTTGGACCCAGACATCGTAGGGAGCAGTTTTTTCATCTGGATTTCAATTATTGTCACTATCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATAGCTAGATTTGACTTTTTGA</pcr_primer_p1>
		<pcr_primer_p2>AGGGTACTAAAACTTGGAGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGATAGCTAGATTTGACTTTTTGACTCCGACAATTTTTGTCAGGCAAAAGCAACTTTCCAATAAATTTAGGAATTTTAAATGTTTGTTTTGATTAGTTTGGCCGTTTTCGAGCAACTTAAGCCATTTTTGAGCCGAAAAGTTATGAGCAGATTTTTGTCCGTTTTTCGTCCGTTTAGGCAATTTCAGACTGATTCTGTCATTTCAGAATTATTTGAAGTTATTCATTGCTTTCTCCAAGTTTTAGTACCCT</canonical_amplicon>
		<polymorphic_amplicon>TGATAGCTAGATTTGACTTTTTGACTCCGACAATTTTTGTCAGGCAAAAGCAACTTTCCAATAAATTTAGGAATTTTAAATGTTTGTTTTGATTAGTTTGGCCGTTTTCGAGCAACTTAAGCCATTTTTGAGCCGAAAAGTTATRAGCAGATTTTTGTCCGTTTTTCGTCCGTTTAGGCAATTTCAGACTGATTCTGTCATTTCAGAATTATTTGAAGTTATTCATTGCTTTCTCCAAGTTTTAGTACCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12417</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>233880</contig_pos>
        <strand>+</strand>
        <context>GTTTCAGCAT[A/C]TCCAGCAGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGGGGATTCTAACAAAGAAGCCAATTCTTATAAAATAATAGTTTCAGCAT</left_flank>
        <right_flank>TCCAGCAGCTAGTCCAGCTTCCGCTCCAGATGTTAACCATAAGGCTGCTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAACAATTTCATGACAGTGGAAGAGACAAAATAGCGGTAAGTTTGAAGTCTCTGAGCTCAGTTCCTATAAATGATATCAAAAATTTGACAATTGATAAAATTTTTATCAAAGTATTGCCTAAATTTTATCAATTGATATAATTTTGATATCTCTTACAGGAACTGAGATAATTCAGCTCAACAAATGTCGCTTCAGTAAACGACCACTGAGGATCCCTACCCAGTAATGAACTTCTTCGTCTGGCTTGCAATAGAAATTTTTCTCACTATTTGTTGCTTTTCCATCATTGTTTCCGCTGTCGTCGTGGGCATTAAATTGTCTCAAAGAAAGAAGGATGTGATTGTTGTGAATAGTGAGTAGAGTTTGGTAGATACGCTCTATTGAGAATCTATAGCTCAGCTCGTTGAGGCACTAAGCCACTAAAACTTTGCTTAGGAATTCGACTCCGGGGATTCTAACAAAGAAGCCAATTCTTATAAAATAATAGTTTCAGCATCTCCAGCAGCTAGTCCAGCTTCCGCTCCAGATGTTAACCATAAGGCTGCTTCGAAGAAGAGCAAGAAGAAGTCAAAGACGGGAGGTACAAGTGCAATGAATTCTGAACCCTCAAAACCCGAGGAAGAGGATCCAGGACTTGGAGCTTAACTTGGTTTTTTTTATTTCTAAAATCCGCCCTTTCTACTCGTTTGGTTAAATAAATCCATTTGATATAGTGATAGCTAGATTTGACTTTTTGACTCCGACAATTTTTGTCAGGCAAAAGCAACTTTCCAATAAATTTAGGAATTTTAAATGTTTGTTTTGATTAGTTTGGCCGTTTTCGAGCAACTTAAGCCATTTTTGAGCCGAAAAGTTATGAGCAGATTTTTGTCCGTTTTTCGTCCGTTTAGGCAATTTCAGACTGATTCTGTCATTTCAGAATTATTTGAAGTTATTCATTGCTTTCTCCAAGTTTTAGTACCCTTTTTTCTTATCTCCAAAAGTTTTTATTTTCTTT</canonical>
            <polymorphic>CTCAACAATTTCATGACAGTGGAAGAGACAAAATAGCGGTAAGTTTGAAGTCTCTGAGCTCAGTTCCTATAAATGATATCAAAAATTTGACAATTGATAAAATTTTTATCAAAGTATTGCCTAAATTTTATCAATTGATATAATTTTGATATCTCTTACAGGAACTGAGATAATTCAGCTCAACAAATGTCGCTTCAGTAAACGACCACTGAGGATCCCTACCCAGTAATGAACTTCTTCGTCTGGCTTGCAATAGAAATTTTTCTCACTATTTGTTGCTTTTCCATCATTGTTTCCGCTGTCGTCGTGGGCATTAAATTGTCTCAAAGAAAGAAGGATGTGATTGTTGTGAATAGTGAGTAGAGTTTGGTAGATACGCTCTATTGAGAATCTATAGCTCAGCTCGTTGAGGCACTAAGCCACTAAAACTTTGCTTAGGAATTCGACTCCGGGGATTCTAACAAAGAAGCCAATTCTTATAAAATAATAGTTTCAGCATMTCCAGCAGCTAGTCCAGCTTCCGCTCCAGATGTTAACCATAAGGCTGCTTCGAAGAAGAGCAAGAAGAAGTCAAAGACGGGAGGTACAAGTGCAATGAATTCTGAACCCTCAAAACCCGAGGAAGAGGATCCAGGACTTGGAGCTTAACTTGGTTTTTTTTATTTCTAAAATCCGCCCTTTCTACTCGTTTGGTTAAATAAATCCATTTGATATAGTGATAGCTAGATTTGACTTTTTGACTCCGACAATTTTTGTCAGGCAAAAGCAACTTTCCAATAAATTTAGGAATTTTAAATGTTTGTTTTGATTAGTTTGGCCGTTTTCGAGCAACTTAAGCCATTTTTGAGCCGAAAAGTTATGAGCAGATTTTTGTCCGTTTTTCGTCCGTTTAGGCAATTTCAGACTGATTCTGTCATTTCAGAATTATTTGAAGTTATTCATTGCTTTCTCCAAGTTTTAGTACCCTTTTTTCTTATCTCCAAAAGTTTTTATTTTCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAAAGAAGGATGTGATTGTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGACTTCTTCTTGCTCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGAAAGAAGGATGTGATTGTTGTGAATAGTGAGTAGAGTTTGGTAGATACGCTCTATTGAGAATCTATAGCTCAGCTCGTTGAGGCACTAAGCCACTAAAACTTTGCTTAGGAATTCGACTCCGGGGATTCTAACAAAGAAGCCAATTCTTATAAAATAATAGTTTCAGCATCTCCAGCAGCTAGTCCAGCTTCCGCTCCAGATGTTAACCATAAGGCTGCTTCGAAGAAGAGCAAGAAGAAGTCAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAGAAAGAAGGATGTGATTGTTGTGAATAGTGAGTAGAGTTTGGTAGATACGCTCTATTGAGAATCTATAGCTCAGCTCGTTGAGGCACTAAGCCACTAAAACTTTGCTTAGGAATTCGACTCCGGGGATTCTAACAAAGAAGCCAATTCTTATAAAATAATAGTTTCAGCATMTCCAGCAGCTAGTCCAGCTTCCGCTCCAGATGTTAACCATAAGGCTGCTTCGAAGAAGAGCAAGAAGAAGTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12423</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>284113</contig_pos>
        <strand></strand>
        <context>TCGATAAAAG[G/T]AACAACTCGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATATAGATAGAGAACGTCACTATATGCAAATAAAAAAAAATCGATAAAAG</left_flank>
        <right_flank>AACAACTCGGGGATCCTCCTCTAACCGTGGTACCCAGCAGTCAAGAACGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAAAATACAAGATTTCAAGGATCACAAGGTTCAGAACTTTTTTTCCTACACATCAAAACTAGGCCATACAAATGTCTATGTAGGTGTCTATTTCTCTAATAACTGTTCTTGTTCTTCTGTTTATTTAGGAGGTGAGGTGTCAATGAACACACCGTGAGAAAGAAAAAAACATTCGCTCAAAATTGATCTAAAAGTGTAAAAAAGAAAGAAGAAGAAGAGTTAGTCATACATGTTAGAAAAGGCTGGAAAGAAGTGGCTAAATTTGAAATTCATAGGTTATAAATTATGAAGAAAACTAGAAAGCTGACAGAATTAGTGTTTTCTGGGACAAAGTTTTTATTCTAGACAAAGGTTAGGTTCTGGAAAATCCGTACAAATTTCGTAGCTATTTTCCAGCAGAATTAAAATTTTGTTCGACAAATTGCAGAACAACTAGTTTCAAAGCGCATATAGATAGAGAACGTCACTATATGCAAATAAAAAAAAATCGATAAAAGGAACAACTCGGGGATCCTCCTCTAACCGTGGTACCCAGCAGTCAAGAACGTGGGCGGATCTGCCAAGTGCTCTCTCCCGACGGGATCAACTGGCTGCCTCTGCTGGCACATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCAAGGAACGAGATAGATAGTGTAGGCGATCGTTGGGACAGAGTGCTGCTCTTGCTGGGACCAGTGTAAAAAGGAAGAGAGAAAGAAGGTTACACCTGCCAGTGTCTTGAAAGAAACAGAAAGAGTAAAAAGAGTGAGAAGATGCTCTGGAGACATCAGAGACCGATGAGAAGGGAATTGCGAAATGGAAGGATTCAGAAGAAGGATCATAGTCGTTCAAAATTACGAAATCAAGATGATAACTTTAAGCTCCTTTATCTTGGTCATAGTAGGAGATATCATAAAGTGGTCAATTAACAAAATGTTGGTGATATTATGATAAGCA</canonical>
            <polymorphic>TATAAAATACAAGATTTCAAGGATCACAAGGTTCAGAACTTTTTTTCCTACACATCAAAACTAGGCCATACAAATGTCTATGTAGGTGTCTATTTCTCTAATAACTGTTCTTGTTCTTCTGTTTATTTAGGAGGTGAGGTGTCAATGAACACACCGTGAGAAAGAAAAAAACATTCGCTCAAAATTGATCTAAAAGTGTAAAAAAGAAAGAAGAAGAAGAGTTAGTCATACATGTTAGAAAAGGCTGGAAAGAAGTGGCTAAATTTGAAATTCATAGGTTATAAATTATGAAGAAAACTAGAAAGCTGACAGAATTAGTGTTTTCTGGGACAAAGTTTTTATTCTAGACAAAGGTTAGGTTCTGGAAAATCCGTACAAATTTCGTAGCTATTTTCCAGCAGAATTAAAATTTTGTTCGACAAATTGCAGAACAACTAGTTTCAAAGCGCATATAGATAGAGAACGTCACTATATGCAAATAAAAAAAAATCGATAAAAGKAACAACTCGGGGATCCTCCTCTAACCGTGGTACCCAGCAGTCAAGAACGTGGGCGGATCTGCCAAGTGCTCTCTCCCGACGGGATCAACTGGCTGCCTCTGCTGGCACATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCAAGGAACGAGATAGATAGTGTAGGCGATCGTTGGGACAGAGTGCTGCTCTTGCTGGGACCAGTGTAAAAAGGAAGAGAGAAAGAAGGTTACACCTGCCAGTGTCTTGAAAGAAACAGAAAGAGTAAAAAGAGTGAGAAGATGCTCTGGAGACATCAGAGACCGATGAGAAGGGAATTGCGAAATGGAAGGATTCAGAAGAAGGATCATAGTCGTTCAAAATTACGAAATCAAGATGATAACTTTAAGCTCCTTTATCTTGGTCATAGTAGGAGATATCATAAAGTGGTCAATTAACAAAATGTTGGTGATATTATGATAAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCATATAGATAGAGAACGTCAC</pcr_primer_p1>
		<pcr_primer_p2>GCCTACACTATCTATCTCGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CGCATATAGATAGAGAACGTCACTATATGCAAATAAAAAAAAATCGATAAAAGGAACAACTCGGGGATCCTCCTCTAACCGTGGTACCCAGCAGTCAAGAACGTGGGCGGATCTGCCAAGTGCTCTCTCCCGACGGGATCAACTGGCTGCCTCTGCTGGCACATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCAAGGAACGAGATAGATAGTGTAGGC</canonical_amplicon>
		<polymorphic_amplicon>CGCATATAGATAGAGAACGTCACTATATGCAAATAAAAAAAAATCGATAAAAGKAACAACTCGGGGATCCTCCTCTAACCGTGGTACCCAGCAGTCAAGAACGTGGGCGGATCTGCCAAGTGCTCTCTCCCGACGGGATCAACTGGCTGCCTCTGCTGGCACATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCAAGGAACGAGATAGATAGTGTAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12424</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>287970</contig_pos>
        <strand>+</strand>
        <context>CATTGTTGAG[A/G]AAACACGAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGAGGTGGTCTACTCGATTCTCGAGCCAGGAGTTGTTTCATTGTTGAG</left_flank>
        <right_flank>AAACACGAGGAGGCAATCGAATTCATTCACATCTCCGATCAATACACAGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGAGCAATTCGCAGTCGTTGGAGATGACGGAGTGACCGATTTGGATAAGCTCGAGCCAACTTTGAAGAGAGACACCGACTCGTCGTTTTCCGCTTGGTGCTCAGGGCGTGTCAATGTTCATTCCCTCTTCTTGCAGGTAATTTCTTAATTTTTCAAGCCATTCCTTCCCATATAACATCCAAATCATTCCAGATGAAAACCATCAAGCGCCAAGACCTGGTCTCCCGAGTCTTAGACATCTATGACCCTTCATCCGACAAGATGACCATCAAAGTCAGTCTCGAAGGTGGAAACGACGTGGATCCGCTGATTTTCGCCGTTGGAGAGAAGAAAATCGCGACGAAGAACTTCCGAGAAATGTTCGATTTGAATAGCTACGTTTCCGAGAAGAAGCAAGTCGCTCAGCAGCTCAATCTACCAGCCACGTGGCAACTCTACGCGGATCAGAATGAGGTGGTCTACTCGATTCTCGAGCCAGGAGTTGTTTCATTGTTGAGGAAACACGAGGAGGCAATCGAATTCATTCACATCTCCGATCAATACACAGGACCAAAGCCAGCCGAGGGAGAGAGCTATACACGACTTCCAGAGCCACAACGATACATGTTCATGTCGTTGAATCTTGCGAAGCTGGGTCAGGATGAGGAGTCTGCCGCTGAGATTCTGAACTTGGTATTCTATTTGATCGATCGGGTGAAGAAGATGAAGTTGAGTAAGGATGCCAAGCAGAAGGCTGAACGGAAGAGAAAGGAGTTCGAGGAGGCTTTCTTGAAGCAGACGCACGCCTTCCGTCAAGAAGCAGCACAGGCTAGAAAAGAGGAGAAGACACGCGAGAGGAAGCAGAAGCTGATGGACGAGCACGATCCGGAGAGACAACGACGACTGGAAGCCAAGGAGCTGAAGAAGGAGGCAAAGGCGAAGCAGCCGAAGATGAAGCAGATGAAAGTGAAATAATTTATTGATTTATGTTCTTTTTTTGTTTAATTTAAAGCACCTCT</canonical>
            <polymorphic>GAGGAGCAATTCGCAGTCGTTGGAGATGACGGAGTGACCGATTTGGATAAGCTCGAGCCAACTTTGAAGAGAGACACCGACTCGTCGTTTTCCGCTTGGTGCTCAGGGCGTGTCAATGTTCATTCCCTCTTCTTGCAGGTAATTTCTTAATTTTTCAAGCCATTCCTTCCCATATAACATCCAAATCATTCCAGATGAAAACCATCAAGCGCCAAGACCTGGTCTCCCGAGTCTTAGACATCTATGACCCTTCATCCGACAAGATGACCATCAAAGTCAGTCTCGAAGGTGGAAACGACGTGGATCCGCTGATTTTCGCCGTTGGAGAGAAGAAAATCGCGACGAAGAACTTCCGAGAAATGTTCGATTTGAATAGCTACGTTTCCGAGAAGAAGCAAGTCGCTCAGCAGCTCAATCTACCAGCCACGTGGCAACTCTACGCGGATCAGAATGAGGTGGTCTACTCGATTCTCGAGCCAGGAGTTGTTTCATTGTTGAGRAAACACGAGGAGGCAATCGAATTCATTCACATCTCCGATCAATACACAGGACCAAAGCCAGCCGAGGGAGAGAGCTATACACGACTTCCAGAGCCACAACGATACATGTTCATGTCGTTGAATCTTGCGAAGCTGGGTCAGGATGAGGAGTCTGCCGCTGAGATTCTGAACTTGGTATTCTATTTGATCGATCGGGTGAAGAAGATGAAGTTGAGTAAGGATGCCAAGCAGAAGGCTGAACGGAAGAGAAAGGAGTTCGAGGAGGCTTTCTTGAAGCAGACGCACGCCTTCCGTCAAGAAGCAGCACAGGCTAGAAAAGAGGAGAAGACACGCGAGAGGAAGCAGAAGCTGATGGACGAGCACGATCCGGAGAGACAACGACGACTGGAAGCCAAGGAGCTGAAGAAGGAGGCAAAGGCGAAGCAGCCGAAGATGAAGCAGATGAAAGTGAAATAATTTATTGATTTATGTTCTTTTTTTGTTTAATTTAAAGCACCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAGAATGAGGTGGTCTACTC</pcr_primer_p1>
		<pcr_primer_p2>TCGATCAAATAGAATACCAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATCAGAATGAGGTGGTCTACTCGATTCTCGAGCCAGGAGTTGTTTCATTGTTGAGGAAACACGAGGAGGCAATCGAATTCATTCACATCTCCGATCAATACACAGGACCAAAGCCAGCCGAGGGAGAGAGCTATACACGACTTCCAGAGCCACAACGATACATGTTCATGTCGTTGAATCTTGCGAAGCTGGGTCAGGATGAGGAGTCTGCCGCTGAGATTCTGAACTTGGTATTCTATTTGATCGA</canonical_amplicon>
		<polymorphic_amplicon>ATCAGAATGAGGTGGTCTACTCGATTCTCGAGCCAGGAGTTGTTTCATTGTTGAGRAAACACGAGGAGGCAATCGAATTCATTCACATCTCCGATCAATACACAGGACCAAAGCCAGCCGAGGGAGAGAGCTATACACGACTTCCAGAGCCACAACGATACATGTTCATGTCGTTGAATCTTGCGAAGCTGGGTCAGGATGAGGAGTCTGCCGCTGAGATTCTGAACTTGGTATTCTATTTGATCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12425</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>360039</contig_pos>
        <strand>+</strand>
        <context>AACAAATCGC[G/T]TATTATTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATTCCAACCCCTAAACAAGATACGCGACTATTTTGGTGAACAAATCGC</left_flank>
        <right_flank>TATTATTTTGCCTGGCAGGGAACATTTATTACACTTTTGTGGCCAGCTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTGAAGAATGAGAGGTTGGGAGATTCACAAGACACTGAACAAGATCCCTCTTCCTCGATAACTTCTGATGAGCAATTGAGACGAAAAGGATTGACATGGTTGCTGATGAGAGATGTTTATGAAGAAGCGTTTGTGTTACATGCACCTAGCAAGGTATGAATCACCGTTTTCAGTGGAAAAATAACAATCAAATTTGAAGTCCTCAAAAAGTAGTTGAACATTTTTCGATTTGTCTGGGCAAAATTGATATATTTTTGCCGGAATTTCTACATAAATCCACTATTTCAGGAGGAGCCATACTTCAAGGAAATGCAGAATGGAAGTTTGAAAACTTACAATGAGTTTATTTCGGAAATTGAGCACGATCCTAGAAAGAGTCTGAGCAATGCTTGGGAGCGGTGAGATTTTTTTTAATGACCAAAATATTACTGTACTTTCAGATGGTACAAATTCCAACCCCTAAACAAGATACGCGACTATTTTGGTGAACAAATCGCGTATTATTTTGCCTGGCAGGGAACATTTATTACACTTTTGTGGCCAGCTGTTATATTTGGATTCATTGTTTTTATTTACGGTTTCATTGATAGGTTTGGGCCACTGTAGAAAATTAAAAATAAATGAAGGAAGTTACAGTATCAGTAGTTCTCCACTGGATTGGAATCATTGCAAAGTGGTGAATTTTAAAGGAAAAACTGAAAATGTCGCATGTGGAATGAGGAATGGGTAAGTGACAGATTGGAACGTATGAAAATGGACGGAAAGTTTGTTGCTATGATCTGAAAATTGTAGGAGGTAGGAAGCAAGTCTAACCACATATTGTTTGAAATTTCGATTTAGTTTGGATTATTTTTTTGAAAGTTATGGATCCAGAGCCAAACCCTACCTACCGTAATTCCTGTAATGGAAGCCCACTCACTTGCACTTTGAGCTCAATTATCTCGGTTAATATGATAGATATTAAAAATGTGTCAACTAATAAAATGTTGGGAATAACA</canonical>
            <polymorphic>ATTTGAAGAATGAGAGGTTGGGAGATTCACAAGACACTGAACAAGATCCCTCTTCCTCGATAACTTCTGATGAGCAATTGAGACGAAAAGGATTGACATGGTTGCTGATGAGAGATGTTTATGAAGAAGCGTTTGTGTTACATGCACCTAGCAAGGTATGAATCACCGTTTTCAGTGGAAAAATAACAATCAAATTTGAAGTCCTCAAAAAGTAGTTGAACATTTTTCGATTTGTCTGGGCAAAATTGATATATTTTTGCCGGAATTTCTACATAAATCCACTATTTCAGGAGGAGCCATACTTCAAGGAAATGCAGAATGGAAGTTTGAAAACTTACAATGAGTTTATTTCGGAAATTGAGCACGATCCTAGAAAGAGTCTGAGCAATGCTTGGGAGCGGTGAGATTTTTTTTAATGACCAAAATATTACTGTACTTTCAGATGGTACAAATTCCAACCCCTAAACAAGATACGCGACTATTTTGGTGAACAAATCGCKTATTATTTTGCCTGGCAGGGAACATTTATTACACTTTTGTGGCCAGCTGTTATATTTGGATTCATTGTTTTTATTTACGGTTTCATTGATAGGTTTGGGCCACTGTAGAAAATTAAAAATAAATGAAGGAAGTTACAGTATCAGTAGTTCTCCACTGGATTGGAATCATTGCAAAGTGGTGAATTTTAAAGGAAAAACTGAAAATGTCGCATGTGGAATGAGGAATGGGTAAGTGACAGATTGGAACGTATGAAAATGGACGGAAAGTTTGTTGCTATGATCTGAAAATTGTAGGAGGTAGGAAGCAAGTCTAACCACATATTGTTTGAAATTTCGATTTAGTTTGGATTATTTTTTTGAAAGTTATGGATCCAGAGCCAAACCCTACCTACCGTAATTCCTGTAATGGAAGCCCACTCACTTGCACTTTGAGCTCAATTATCTCGGTTAATATGATAGATATTAAAAATGTGTCAACTAATAAAATGTTGGGAATAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 475 23</canonical_bands>
                <polymorphic_bands>525 475</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACAAATTCCAACCCCTAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTCCTTTAAAATTCACCACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACAAATTCCAACCCCTAAACAAGATACGCGACTATTTTGGTGAACAAATCGCGTATTATTTTGCCTGGCAGGGAACATTTATTACACTTTTGTGGCCAGCTGTTATATTTGGATTCATTGTTTTTATTTACGGTTTCATTGATAGGTTTGGGCCACTGTAGAAAATTAAAAATAAATGAAGGAAGTTACAGTATCAGTAGTTCTCCACTGGATTGGAATCATTGCAAAGTGGTGAATTTTAAAGGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TACAAATTCCAACCCCTAAACAAGATACGCGACTATTTTGGTGAACAAATCGCKTATTATTTTGCCTGGCAGGGAACATTTATTACACTTTTGTGGCCAGCTGTTATATTTGGATTCATTGTTTTTATTTACGGTTTCATTGATAGGTTTGGGCCACTGTAGAAAATTAAAAATAAATGAAGGAAGTTACAGTATCAGTAGTTCTCCACTGGATTGGAATCATTGCAAAGTGGTGAATTTTAAAGGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12426</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>360139</contig_pos>
        <strand>+</strand>
        <context>TAGGTTTGGG[C/T]CACTGTAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATATTTGGATTCATTGTTTTTATTTACGGTTTCATTGATAGGTTTGGG</left_flank>
        <right_flank>CACTGTAGAAAATTAAAAATAAATGAAGGAAGTTACAGTATCAGTAGTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTGCTGATGAGAGATGTTTATGAAGAAGCGTTTGTGTTACATGCACCTAGCAAGGTATGAATCACCGTTTTCAGTGGAAAAATAACAATCAAATTTGAAGTCCTCAAAAAGTAGTTGAACATTTTTCGATTTGTCTGGGCAAAATTGATATATTTTTGCCGGAATTTCTACATAAATCCACTATTTCAGGAGGAGCCATACTTCAAGGAAATGCAGAATGGAAGTTTGAAAACTTACAATGAGTTTATTTCGGAAATTGAGCACGATCCTAGAAAGAGTCTGAGCAATGCTTGGGAGCGGTGAGATTTTTTTTAATGACCAAAATATTACTGTACTTTCAGATGGTACAAATTCCAACCCCTAAACAAGATACGCGACTATTTTGGTGAACAAATCGCGTATTATTTTGCCTGGCAGGGAACATTTATTACACTTTTGTGGCCAGCTGTTATATTTGGATTCATTGTTTTTATTTACGGTTTCATTGATAGGTTTGGGCCACTGTAGAAAATTAAAAATAAATGAAGGAAGTTACAGTATCAGTAGTTCTCCACTGGATTGGAATCATTGCAAAGTGGTGAATTTTAAAGGAAAAACTGAAAATGTCGCATGTGGAATGAGGAATGGGTAAGTGACAGATTGGAACGTATGAAAATGGACGGAAAGTTTGTTGCTATGATCTGAAAATTGTAGGAGGTAGGAAGCAAGTCTAACCACATATTGTTTGAAATTTCGATTTAGTTTGGATTATTTTTTTGAAAGTTATGGATCCAGAGCCAAACCCTACCTACCGTAATTCCTGTAATGGAAGCCCACTCACTTGCACTTTGAGCTCAATTATCTCGGTTAATATGATAGATATTAAAAATGTGTCAACTAATAAAATGTTGGGAATAACATAATCAGTGTTTTATCAGTTGACAAAATTCTGATATCATTCACAGGACTCGGGATAATTGAGCTCAAAGTTAAGGTAAAGAATAAGGGCTCAAGGCTGAC</canonical>
            <polymorphic>GTTGCTGATGAGAGATGTTTATGAAGAAGCGTTTGTGTTACATGCACCTAGCAAGGTATGAATCACCGTTTTCAGTGGAAAAATAACAATCAAATTTGAAGTCCTCAAAAAGTAGTTGAACATTTTTCGATTTGTCTGGGCAAAATTGATATATTTTTGCCGGAATTTCTACATAAATCCACTATTTCAGGAGGAGCCATACTTCAAGGAAATGCAGAATGGAAGTTTGAAAACTTACAATGAGTTTATTTCGGAAATTGAGCACGATCCTAGAAAGAGTCTGAGCAATGCTTGGGAGCGGTGAGATTTTTTTTAATGACCAAAATATTACTGTACTTTCAGATGGTACAAATTCCAACCCCTAAACAAGATACGCGACTATTTTGGTGAACAAATCGCGTATTATTTTGCCTGGCAGGGAACATTTATTACACTTTTGTGGCCAGCTGTTATATTTGGATTCATTGTTTTTATTTACGGTTTCATTGATAGGTTTGGGYCACTGTAGAAAATTAAAAATAAATGAAGGAAGTTACAGTATCAGTAGTTCTCCACTGGATTGGAATCATTGCAAAGTGGTGAATTTTAAAGGAAAAACTGAAAATGTCGCATGTGGAATGAGGAATGGGTAAGTGACAGATTGGAACGTATGAAAATGGACGGAAAGTTTGTTGCTATGATCTGAAAATTGTAGGAGGTAGGAAGCAAGTCTAACCACATATTGTTTGAAATTTCGATTTAGTTTGGATTATTTTTTTGAAAGTTATGGATCCAGAGCCAAACCCTACCTACCGTAATTCCTGTAATGGAAGCCCACTCACTTGCACTTTGAGCTCAATTATCTCGGTTAATATGATAGATATTAAAAATGTGTCAACTAATAAAATGTTGGGAATAACATAATCAGTGTTTTATCAGTTGACAAAATTCTGATATCATTCACAGGACTCGGGATAATTGAGCTCAAAGTTAAGGTAAAGAATAAGGGCTCAAGGCTGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 442 57</canonical_bands>
                <polymorphic_bands>558 442</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>278 246 196 129 53 35 26 21 7 5 4</canonical_bands>
                <polymorphic_bands>331 246 196 129 35 26 21 7 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGCTGTTATATTTGGATTCATT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCAGATCATAGCAACAAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAGCTGTTATATTTGGATTCATTGTTTTTATTTACGGTTTCATTGATAGGTTTGGGCCACTGTAGAAAATTAAAAATAAATGAAGGAAGTTACAGTATCAGTAGTTCTCCACTGGATTGGAATCATTGCAAAGTGGTGAATTTTAAAGGAAAAACTGAAAATGTCGCATGTGGAATGAGGAATGGGTAAGTGACAGATTGGAACGTATGAAAATGGACGGAAAGTTTGTTGCTATGATCTGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CAGCTGTTATATTTGGATTCATTGTTTTTATTTACGGTTTCATTGATAGGTTTGGGYCACTGTAGAAAATTAAAAATAAATGAAGGAAGTTACAGTATCAGTAGTTCTCCACTGGATTGGAATCATTGCAAAGTGGTGAATTTTAAAGGAAAAACTGAAAATGTCGCATGTGGAATGAGGAATGGGTAAGTGACAGATTGGAACGTATGAAAATGGACGGAAAGTTTGTTGCTATGATCTGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12427</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>360289</contig_pos>
        <strand>+</strand>
        <context>ATTGGAACGT[A/C]TGAAAATGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAAATGTCGCATGTGGAATGAGGAATGGGTAAGTGACAGATTGGAACGT</left_flank>
        <right_flank>TGAAAATGGACGGAAAGTTTGTTGCTATGATCTGAAAATTGTAGGAGGTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATTTTTGCCGGAATTTCTACATAAATCCACTATTTCAGGAGGAGCCATACTTCAAGGAAATGCAGAATGGAAGTTTGAAAACTTACAATGAGTTTATTTCGGAAATTGAGCACGATCCTAGAAAGAGTCTGAGCAATGCTTGGGAGCGGTGAGATTTTTTTTAATGACCAAAATATTACTGTACTTTCAGATGGTACAAATTCCAACCCCTAAACAAGATACGCGACTATTTTGGTGAACAAATCGCGTATTATTTTGCCTGGCAGGGAACATTTATTACACTTTTGTGGCCAGCTGTTATATTTGGATTCATTGTTTTTATTTACGGTTTCATTGATAGGTTTGGGCCACTGTAGAAAATTAAAAATAAATGAAGGAAGTTACAGTATCAGTAGTTCTCCACTGGATTGGAATCATTGCAAAGTGGTGAATTTTAAAGGAAAAACTGAAAATGTCGCATGTGGAATGAGGAATGGGTAAGTGACAGATTGGAACGTATGAAAATGGACGGAAAGTTTGTTGCTATGATCTGAAAATTGTAGGAGGTAGGAAGCAAGTCTAACCACATATTGTTTGAAATTTCGATTTAGTTTGGATTATTTTTTTGAAAGTTATGGATCCAGAGCCAAACCCTACCTACCGTAATTCCTGTAATGGAAGCCCACTCACTTGCACTTTGAGCTCAATTATCTCGGTTAATATGATAGATATTAAAAATGTGTCAACTAATAAAATGTTGGGAATAACATAATCAGTGTTTTATCAGTTGACAAAATTCTGATATCATTCACAGGACTCGGGATAATTGAGCTCAAAGTTAAGGTAAAGAATAAGGGCTCAAGGCTGACTGTTTGGGGAGCTTCTATTGCTGGGAAGACAAAAAGCTCTTCTCTTCCAAACCCGATATCTCTTCTAGAAATATTTATAAAAATTTTGTCAACTACAAAATTGAAGATCCTGACTTATTTTATACTTTTTCAAAATTTTCATATCAAACA</canonical>
            <polymorphic>ATATTTTTGCCGGAATTTCTACATAAATCCACTATTTCAGGAGGAGCCATACTTCAAGGAAATGCAGAATGGAAGTTTGAAAACTTACAATGAGTTTATTTCGGAAATTGAGCACGATCCTAGAAAGAGTCTGAGCAATGCTTGGGAGCGGTGAGATTTTTTTTAATGACCAAAATATTACTGTACTTTCAGATGGTACAAATTCCAACCCCTAAACAAGATACGCGACTATTTTGGTGAACAAATCGCGTATTATTTTGCCTGGCAGGGAACATTTATTACACTTTTGTGGCCAGCTGTTATATTTGGATTCATTGTTTTTATTTACGGTTTCATTGATAGGTTTGGGCCACTGTAGAAAATTAAAAATAAATGAAGGAAGTTACAGTATCAGTAGTTCTCCACTGGATTGGAATCATTGCAAAGTGGTGAATTTTAAAGGAAAAACTGAAAATGTCGCATGTGGAATGAGGAATGGGTAAGTGACAGATTGGAACGTMTGAAAATGGACGGAAAGTTTGTTGCTATGATCTGAAAATTGTAGGAGGTAGGAAGCAAGTCTAACCACATATTGTTTGAAATTTCGATTTAGTTTGGATTATTTTTTTGAAAGTTATGGATCCAGAGCCAAACCCTACCTACCGTAATTCCTGTAATGGAAGCCCACTCACTTGCACTTTGAGCTCAATTATCTCGGTTAATATGATAGATATTAAAAATGTGTCAACTAATAAAATGTTGGGAATAACATAATCAGTGTTTTATCAGTTGACAAAATTCTGATATCATTCACAGGACTCGGGATAATTGAGCTCAAAGTTAAGGTAAAGAATAAGGGCTCAAGGCTGACTGTTTGGGGAGCTTCTATTGCTGGGAAGACAAAAAGCTCTTCTCTTCCAAACCCGATATCTCTTCTAGAAATATTTATAAAAATTTTGTCAACTACAAAATTGAAGATCCTGACTTATTTTATACTTTTTCAAAATTTTCATATCAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTACGGTTTCATTGATAGGTT</pcr_primer_p1>
		<pcr_primer_p2>TCAAACAATATGTGGTTAGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>ATTTACGGTTTCATTGATAGGTTTGGGCCACTGTAGAAAATTAAAAATAAATGAAGGAAGTTACAGTATCAGTAGTTCTCCACTGGATTGGAATCATTGCAAAGTGGTGAATTTTAAAGGAAAAACTGAAAATGTCGCATGTGGAATGAGGAATGGGTAAGTGACAGATTGGAACGTATGAAAATGGACGGAAAGTTTGTTGCTATGATCTGAAAATTGTAGGAGGTAGGAAGCAAGTCTAACCACATATTGTTTGA</canonical_amplicon>
		<polymorphic_amplicon>ATTTACGGTTTCATTGATAGGTTTGGGCCACTGTAGAAAATTAAAAATAAATGAAGGAAGTTACAGTATCAGTAGTTCTCCACTGGATTGGAATCATTGCAAAGTGGTGAATTTTAAAGGAAAAACTGAAAATGTCGCATGTGGAATGAGGAATGGGTAAGTGACAGATTGGAACGTMTGAAAATGGACGGAAAGTTTGTTGCTATGATCTGAAAATTGTAGGAGGTAGGAAGCAAGTCTAACCACATATTGTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12428</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>360341</contig_pos>
        <strand>+</strand>
        <context>TAGGAGGTAG[G/T]AAGCAAGTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAAATGGACGGAAAGTTTGTTGCTATGATCTGAAAATTGTAGGAGGTAG</left_flank>
        <right_flank>AAGCAAGTCTAACCACATATTGTTTGAAATTTCGATTTAGTTTGGATTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAAGGAAATGCAGAATGGAAGTTTGAAAACTTACAATGAGTTTATTTCGGAAATTGAGCACGATCCTAGAAAGAGTCTGAGCAATGCTTGGGAGCGGTGAGATTTTTTTTAATGACCAAAATATTACTGTACTTTCAGATGGTACAAATTCCAACCCCTAAACAAGATACGCGACTATTTTGGTGAACAAATCGCGTATTATTTTGCCTGGCAGGGAACATTTATTACACTTTTGTGGCCAGCTGTTATATTTGGATTCATTGTTTTTATTTACGGTTTCATTGATAGGTTTGGGCCACTGTAGAAAATTAAAAATAAATGAAGGAAGTTACAGTATCAGTAGTTCTCCACTGGATTGGAATCATTGCAAAGTGGTGAATTTTAAAGGAAAAACTGAAAATGTCGCATGTGGAATGAGGAATGGGTAAGTGACAGATTGGAACGTATGAAAATGGACGGAAAGTTTGTTGCTATGATCTGAAAATTGTAGGAGGTAGGAAGCAAGTCTAACCACATATTGTTTGAAATTTCGATTTAGTTTGGATTATTTTTTTGAAAGTTATGGATCCAGAGCCAAACCCTACCTACCGTAATTCCTGTAATGGAAGCCCACTCACTTGCACTTTGAGCTCAATTATCTCGGTTAATATGATAGATATTAAAAATGTGTCAACTAATAAAATGTTGGGAATAACATAATCAGTGTTTTATCAGTTGACAAAATTCTGATATCATTCACAGGACTCGGGATAATTGAGCTCAAAGTTAAGGTAAAGAATAAGGGCTCAAGGCTGACTGTTTGGGGAGCTTCTATTGCTGGGAAGACAAAAAGCTCTTCTCTTCCAAACCCGATATCTCTTCTAGAAATATTTATAAAAATTTTGTCAACTACAAAATTGAAGATCCTGACTTATTTTATACTTTTTCAAAATTTTCATATCAAACAAACAAAGTTTAAGTACTTCTGTAGTTGCTCAAATTGAACGAATATTTCAGAG</canonical>
            <polymorphic>TTCAAGGAAATGCAGAATGGAAGTTTGAAAACTTACAATGAGTTTATTTCGGAAATTGAGCACGATCCTAGAAAGAGTCTGAGCAATGCTTGGGAGCGGTGAGATTTTTTTTAATGACCAAAATATTACTGTACTTTCAGATGGTACAAATTCCAACCCCTAAACAAGATACGCGACTATTTTGGTGAACAAATCGCGTATTATTTTGCCTGGCAGGGAACATTTATTACACTTTTGTGGCCAGCTGTTATATTTGGATTCATTGTTTTTATTTACGGTTTCATTGATAGGTTTGGGCCACTGTAGAAAATTAAAAATAAATGAAGGAAGTTACAGTATCAGTAGTTCTCCACTGGATTGGAATCATTGCAAAGTGGTGAATTTTAAAGGAAAAACTGAAAATGTCGCATGTGGAATGAGGAATGGGTAAGTGACAGATTGGAACGTATGAAAATGGACGGAAAGTTTGTTGCTATGATCTGAAAATTGTAGGAGGTAGKAAGCAAGTCTAACCACATATTGTTTGAAATTTCGATTTAGTTTGGATTATTTTTTTGAAAGTTATGGATCCAGAGCCAAACCCTACCTACCGTAATTCCTGTAATGGAAGCCCACTCACTTGCACTTTGAGCTCAATTATCTCGGTTAATATGATAGATATTAAAAATGTGTCAACTAATAAAATGTTGGGAATAACATAATCAGTGTTTTATCAGTTGACAAAATTCTGATATCATTCACAGGACTCGGGATAATTGAGCTCAAAGTTAAGGTAAAGAATAAGGGCTCAAGGCTGACTGTTTGGGGAGCTTCTATTGCTGGGAAGACAAAAAGCTCTTCTCTTCCAAACCCGATATCTCTTCTAGAAATATTTATAAAAATTTTGTCAACTACAAAATTGAAGATCCTGACTTATTTTATACTTTTTCAAAATTTTCATATCAAACAAACAAAGTTTAAGTACTTCTGTAGTTGCTCAAATTGAACGAATATTTCAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGGAAGTTACAGTATCAGTAGTT</pcr_primer_p1>
		<pcr_primer_p2>CTGGATCCATAACTTTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TGAAGGAAGTTACAGTATCAGTAGTTCTCCACTGGATTGGAATCATTGCAAAGTGGTGAATTTTAAAGGAAAAACTGAAAATGTCGCATGTGGAATGAGGAATGGGTAAGTGACAGATTGGAACGTATGAAAATGGACGGAAAGTTTGTTGCTATGATCTGAAAATTGTAGGAGGTAGGAAGCAAGTCTAACCACATATTGTTTGAAATTTCGATTTAGTTTGGATTATTTTTTTGAAAGTTATGGATCCAG</canonical_amplicon>
		<polymorphic_amplicon>TGAAGGAAGTTACAGTATCAGTAGTTCTCCACTGGATTGGAATCATTGCAAAGTGGTGAATTTTAAAGGAAAAACTGAAAATGTCGCATGTGGAATGAGGAATGGGTAAGTGACAGATTGGAACGTATGAAAATGGACGGAAAGTTTGTTGCTATGATCTGAAAATTGTAGGAGGTAGKAAGCAAGTCTAACCACATATTGTTTGAAATTTCGATTTAGTTTGGATTATTTTTTTGAAAGTTATGGATCCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12429</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>362595</contig_pos>
        <strand>+</strand>
        <context>TTATTGTTAT[A/T]GTTTTCCAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGCCGATGGAGAGTATTGTACGGTTCAGAATCGCTTAATTATTGTTAT</left_flank>
        <right_flank>GTTTTCCAGGTTTGTCTATTTATTTTCAAAAAAAATTATCAAATACTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACCACGAGACCACTGGAGTAGGAAGGTGGAGAGGGTGTATAAGAGGCGCCACTTGTTGCGAAAGATAAGAGGAGGGAATAATTGACTTGAGCTTGCAGAGAATGGTTGAAGCCAAGTGCTGGAGACTTCGTTTTATGGGAGATGAATGAGAAAATTATAATGTTCGGGACCACCATGATGTTTGCAAGTCTATTCCCTCTCTCACCACTTCTTGCTCTAATCATTGGTTTTGTGGATATGCGAATCGACGCGATCGTTTGATTTGGTTCAATCGGAAGCCGATTCCATTGATTACAAATGGTAATTTCCATTGGGATTACTGTAGAAAACAATAATTTTATTTTTAGGAATCGGAATATGGCTTCCAATTCTCACTTTCCTACAGTACTGCGCAGTTTTCACGAATGCTTTCATTGTTGCATTCACCTCGGGTTTCTGCTCGACATTCTTTGCCGATGGAGAGTATTGTACGGTTCAGAATCGCTTAATTATTGTTATAGTTTTCCAGGTTTGTCTATTTATTTTCAAAAAAAATTATCAAATACTTTTCTTGTATTCTTTCAGAACCTCGTCTTCGGTCTCAAATATCTTCTCTCCAGTGTGATTCCATCAGTTCCTGCTTCCATTAAAGTAGCTTTGAGGAAGAAACGCTATGTGACTGCTCATATAATGGAGAAAGGAGATGTGCCCCATAAAACTAGAATTAAGAAGCGCACTCGAATGGTAAAACTAGCATGGATCACCTCGAATCATAAGGCTGCTCGGCGTGGGAAAAAGAAGGACTCAGCAACGCCACCAAAAATGATGATGAAGCGATTGTTGCAAGATTAACTTTATCGAAGGTTCCACAACGAAAGCTACCGTAACCAAATAATATTTTAATTGCTTTTCACTGATTGATTTTCGTCGATTTTTCAGTTATTTTTCCCCAAACAAGTCGGAAAATACGATAATGTGATCAAATTCTTGTCCAATGGGGATGAACCTCGCGGCCTGGAA</canonical>
            <polymorphic>CACCACGAGACCACTGGAGTAGGAAGGTGGAGAGGGTGTATAAGAGGCGCCACTTGTTGCGAAAGATAAGAGGAGGGAATAATTGACTTGAGCTTGCAGAGAATGGTTGAAGCCAAGTGCTGGAGACTTCGTTTTATGGGAGATGAATGAGAAAATTATAATGTTCGGGACCACCATGATGTTTGCAAGTCTATTCCCTCTCTCACCACTTCTTGCTCTAATCATTGGTTTTGTGGATATGCGAATCGACGCGATCGTTTGATTTGGTTCAATCGGAAGCCGATTCCATTGATTACAAATGGTAATTTCCATTGGGATTACTGTAGAAAACAATAATTTTATTTTTAGGAATCGGAATATGGCTTCCAATTCTCACTTTCCTACAGTACTGCGCAGTTTTCACGAATGCTTTCATTGTTGCATTCACCTCGGGTTTCTGCTCGACATTCTTTGCCGATGGAGAGTATTGTACGGTTCAGAATCGCTTAATTATTGTTATWGTTTTCCAGGTTTGTCTATTTATTTTCAAAAAAAATTATCAAATACTTTTCTTGTATTCTTTCAGAACCTCGTCTTCGGTCTCAAATATCTTCTCTCCAGTGTGATTCCATCAGTTCCTGCTTCCATTAAAGTAGCTTTGAGGAAGAAACGCTATGTGACTGCTCATATAATGGAGAAAGGAGATGTGCCCCATAAAACTAGAATTAAGAAGCGCACTCGAATGGTAAAACTAGCATGGATCACCTCGAATCATAAGGCTGCTCGGCGTGGGAAAAAGAAGGACTCAGCAACGCCACCAAAAATGATGATGAAGCGATTGTTGCAAGATTAACTTTATCGAAGGTTCCACAACGAAAGCTACCGTAACCAAATAATATTTTAATTGCTTTTCACTGATTGATTTTCGTCGATTTTTCAGTTATTTTTCCCCAAACAAGTCGGAAAATACGATAATGTGATCAAATTCTTGTCCAATGGGGATGAACCTCGCGGCCTGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATGGCTTCCAATTCTCAC</pcr_primer_p1>
		<pcr_primer_p2>TCACACTGGAGAGAAGATATTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATATGGCTTCCAATTCTCACTTTCCTACAGTACTGCGCAGTTTTCACGAATGCTTTCATTGTTGCATTCACCTCGGGTTTCTGCTCGACATTCTTTGCCGATGGAGAGTATTGTACGGTTCAGAATCGCTTAATTATTGTTATAGTTTTCCAGGTTTGTCTATTTATTTTCAAAAAAAATTATCAAATACTTTTCTTGTATTCTTTCAGAACCTCGTCTTCGGTCTCAAATATCTTCTCTCCAGTGTGA</canonical_amplicon>
		<polymorphic_amplicon>AATATGGCTTCCAATTCTCACTTTCCTACAGTACTGCGCAGTTTTCACGAATGCTTTCATTGTTGCATTCACCTCGGGTTTCTGCTCGACATTCTTTGCCGATGGAGAGTATTGTACGGTTCAGAATCGCTTAATTATTGTTATWGTTTTCCAGGTTTGTCTATTTATTTTCAAAAAAAATTATCAAATACTTTTCTTGTATTCTTTCAGAACCTCGTCTTCGGTCTCAAATATCTTCTCTCCAGTGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12430</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>362410</contig_pos>
        <strand>+</strand>
        <context>ATTTCCATTG[G/T]GATTACTGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGGTTCAATCGGAAGCCGATTCCATTGATTACAAATGGTAATTTCCATTG</left_flank>
        <right_flank>GATTACTGTAGAAAACAATAATTTTATTTTTAGGAATCGGAATATGGCTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATACTTTGTAAAACTATTCCGTCTTCGAATGTACACAAGCAGAACTGAAGCAAAACGGGTTGAAGCTGAAGAAGATGACCAGGCCAATGTTTTAGTGAGGTAAAAAATTAGAAAAACGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACTGGAGTAGGAAGGTGGAGAGGGTGTATAAGAGGCGCCACTTGTTGCGAAAGATAAGAGGAGGGAATAATTGACTTGAGCTTGCAGAGAATGGTTGAAGCCAAGTGCTGGAGACTTCGTTTTATGGGAGATGAATGAGAAAATTATAATGTTCGGGACCACCATGATGTTTGCAAGTCTATTCCCTCTCTCACCACTTCTTGCTCTAATCATTGGTTTTGTGGATATGCGAATCGACGCGATCGTTTGATTTGGTTCAATCGGAAGCCGATTCCATTGATTACAAATGGTAATTTCCATTGGGATTACTGTAGAAAACAATAATTTTATTTTTAGGAATCGGAATATGGCTTCCAATTCTCACTTTCCTACAGTACTGCGCAGTTTTCACGAATGCTTTCATTGTTGCATTCACCTCGGGTTTCTGCTCGACATTCTTTGCCGATGGAGAGTATTGTACGGTTCAGAATCGCTTAATTATTGTTATAGTTTTCCAGGTTTGTCTATTTATTTTCAAAAAAAATTATCAAATACTTTTCTTGTATTCTTTCAGAACCTCGTCTTCGGTCTCAAATATCTTCTCTCCAGTGTGATTCCATCAGTTCCTGCTTCCATTAAAGTAGCTTTGAGGAAGAAACGCTATGTGACTGCTCATATAATGGAGAAAGGAGATGTGCCCCATAAAACTAGAATTAAGAAGCGCACTCGAATGGTAAAACTAGCATGGATCACCTCGAATCATAAGGCTGCTCGGCGTGGGAAAAAGAAGGACTCAGCAACGCCACCAAAAATGATGATGAAGC</canonical>
            <polymorphic>AGATACTTTGTAAAACTATTCCGTCTTCGAATGTACACAAGCAGAACTGAAGCAAAACGGGTTGAAGCTGAAGAAGATGACCAGGCCAATGTTTTAGTGAGGTAAAAAATTAGAAAAACGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACTGGAGTAGGAAGGTGGAGAGGGTGTATAAGAGGCGCCACTTGTTGCGAAAGATAAGAGGAGGGAATAATTGACTTGAGCTTGCAGAGAATGGTTGAAGCCAAGTGCTGGAGACTTCGTTTTATGGGAGATGAATGAGAAAATTATAATGTTCGGGACCACCATGATGTTTGCAAGTCTATTCCCTCTCTCACCACTTCTTGCTCTAATCATTGGTTTTGTGGATATGCGAATCGACGCGATCGTTTGATTTGGTTCAATCGGAAGCCGATTCCATTGATTACAAATGGTAATTTCCATTGKGATTACTGTAGAAAACAATAATTTTATTTTTAGGAATCGGAATATGGCTTCCAATTCTCACTTTCCTACAGTACTGCGCAGTTTTCACGAATGCTTTCATTGTTGCATTCACCTCGGGTTTCTGCTCGACATTCTTTGCCGATGGAGAGTATTGTACGGTTCAGAATCGCTTAATTATTGTTATAGTTTTCCAGGTTTGTCTATTTATTTTCAAAAAAAATTATCAAATACTTTTCTTGTATTCTTTCAGAACCTCGTCTTCGGTCTCAAATATCTTCTCTCCAGTGTGATTCCATCAGTTCCTGCTTCCATTAAAGTAGCTTTGAGGAAGAAACGCTATGTGACTGCTCATATAATGGAGAAAGGAGATGTGCCCCATAAAACTAGAATTAAGAAGCGCACTCGAATGGTAAAACTAGCATGGATCACCTCGAATCATAAGGCTGCTCGGCGTGGGAAAAAGAAGGACTCAGCAACGCCACCAAAAATGATGATGAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTATAATGTTCGGGACCAC</pcr_primer_p1>
		<pcr_primer_p2>GCAGTACTGTAGGAAAGTGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AATTATAATGTTCGGGACCACCATGATGTTTGCAAGTCTATTCCCTCTCTCACCACTTCTTGCTCTAATCATTGGTTTTGTGGATATGCGAATCGACGCGATCGTTTGATTTGGTTCAATCGGAAGCCGATTCCATTGATTACAAATGGTAATTTCCATTGGGATTACTGTAGAAAACAATAATTTTATTTTTAGGAATCGGAATATGGCTTCCAATTCTCACTTTCCTACAGTACTGC</canonical_amplicon>
		<polymorphic_amplicon>AATTATAATGTTCGGGACCACCATGATGTTTGCAAGTCTATTCCCTCTCTCACCACTTCTTGCTCTAATCATTGGTTTTGTGGATATGCGAATCGACGCGATCGTTTGATTTGGTTCAATCGGAAGCCGATTCCATTGATTACAAATGGTAATTTCCATTGKGATTACTGTAGAAAACAATAATTTTATTTTTAGGAATCGGAATATGGCTTCCAATTCTCACTTTCCTACAGTACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12431</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>362225</contig_pos>
        <strand>+</strand>
        <context>CTGGAGACTT[C/T]GTTTTATGGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATTGACTTGAGCTTGCAGAGAATGGTTGAAGCCAAGTGCTGGAGACTT</left_flank>
        <right_flank>GTTTTATGGGAGATGAATGAGAAAATTATAATGTTCGGGACCACCATGAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACCGCATGGACTTTTTGGACTTGGAGAGGAATTCAAAGACACTTGTCTAGACGATACGTGTAGCTCTTTGCTGGCACTTCAGTTGCTAACCCACACTTTGATTAAACCGGTTCCCAAGTTTTTGAAAGATGTTGTGATACCGTATGAAAAAAAGGAGAGAAGCATTTTCAGTCTCACAATTCCAGATACTTTGTAAAACTATTCCGTCTTCGAATGTACACAAGCAGAACTGAAGCAAAACGGGTTGAAGCTGAAGAAGATGACCAGGCCAATGTTTTAGTGAGGTAAAAAATTAGAAAAACGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACTGGAGTAGGAAGGTGGAGAGGGTGTATAAGAGGCGCCACTTGTTGCGAAAGATAAGAGGAGGGAATAATTGACTTGAGCTTGCAGAGAATGGTTGAAGCCAAGTGCTGGAGACTTCGTTTTATGGGAGATGAATGAGAAAATTATAATGTTCGGGACCACCATGATGTTTGCAAGTCTATTCCCTCTCTCACCACTTCTTGCTCTAATCATTGGTTTTGTGGATATGCGAATCGACGCGATCGTTTGATTTGGTTCAATCGGAAGCCGATTCCATTGATTACAAATGGTAATTTCCATTGGGATTACTGTAGAAAACAATAATTTTATTTTTAGGAATCGGAATATGGCTTCCAATTCTCACTTTCCTACAGTACTGCGCAGTTTTCACGAATGCTTTCATTGTTGCATTCACCTCGGGTTTCTGCTCGACATTCTTTGCCGATGGAGAGTATTGTACGGTTCAGAATCGCTTAATTATTGTTATAGTTTTCCAGGTTTGTCTATTTATTTTCAAAAAAAATTATCAAATACTTTTCTTGTATTCTTTCAGAACCTCGTCTTCGGTCTCAAATATCTTCTCTCCAGTGTGATTCCATCAGTTCCTGCTTCCATTAA</canonical>
            <polymorphic>CAACCGCATGGACTTTTTGGACTTGGAGAGGAATTCAAAGACACTTGTCTAGACGATACGTGTAGCTCTTTGCTGGCACTTCAGTTGCTAACCCACACTTTGATTAAACCGGTTCCCAAGTTTTTGAAAGATGTTGTGATACCGTATGAAAAAAAGGAGAGAAGCATTTTCAGTCTCACAATTCCAGATACTTTGTAAAACTATTCCGTCTTCGAATGTACACAAGCAGAACTGAAGCAAAACGGGTTGAAGCTGAAGAAGATGACCAGGCCAATGTTTTAGTGAGGTAAAAAATTAGAAAAACGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACTGGAGTAGGAAGGTGGAGAGGGTGTATAAGAGGCGCCACTTGTTGCGAAAGATAAGAGGAGGGAATAATTGACTTGAGCTTGCAGAGAATGGTTGAAGCCAAGTGCTGGAGACTTYGTTTTATGGGAGATGAATGAGAAAATTATAATGTTCGGGACCACCATGATGTTTGCAAGTCTATTCCCTCTCTCACCACTTCTTGCTCTAATCATTGGTTTTGTGGATATGCGAATCGACGCGATCGTTTGATTTGGTTCAATCGGAAGCCGATTCCATTGATTACAAATGGTAATTTCCATTGGGATTACTGTAGAAAACAATAATTTTATTTTTAGGAATCGGAATATGGCTTCCAATTCTCACTTTCCTACAGTACTGCGCAGTTTTCACGAATGCTTTCATTGTTGCATTCACCTCGGGTTTCTGCTCGACATTCTTTGCCGATGGAGAGTATTGTACGGTTCAGAATCGCTTAATTATTGTTATAGTTTTCCAGGTTTGTCTATTTATTTTCAAAAAAAATTATCAAATACTTTTCTTGTATTCTTTCAGAACCTCGTCTTCGGTCTCAAATATCTTCTCTCCAGTGTGATTCCATCAGTTCCTGCTTCCATTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGATGTGATAACCACTACACC</pcr_primer_p1>
		<pcr_primer_p2>AACCAATGATTAGAGCAAGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAGATGTGATAACCACTACACCACGAGACCACTGGAGTAGGAAGGTGGAGAGGGTGTATAAGAGGCGCCACTTGTTGCGAAAGATAAGAGGAGGGAATAATTGACTTGAGCTTGCAGAGAATGGTTGAAGCCAAGTGCTGGAGACTTCGTTTTATGGGAGATGAATGAGAAAATTATAATGTTCGGGACCACCATGATGTTTGCAAGTCTATTCCCTCTCTCACCACTTCTTGCTCTAATCATTGGTT</canonical_amplicon>
		<polymorphic_amplicon>ACAGATGTGATAACCACTACACCACGAGACCACTGGAGTAGGAAGGTGGAGAGGGTGTATAAGAGGCGCCACTTGTTGCGAAAGATAAGAGGAGGGAATAATTGACTTGAGCTTGCAGAGAATGGTTGAAGCCAAGTGCTGGAGACTTYGTTTTATGGGAGATGAATGAGAAAATTATAATGTTCGGGACCACCATGATGTTTGCAAGTCTATTCCCTCTCTCACCACTTCTTGCTCTAATCATTGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12432</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>362115</contig_pos>
        <strand></strand>
        <context>ACCACKKGAG[T/A]WGGAAGGTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACTGGAG</left_flank>
        <right_flank>AGGAAGGTGGAGAGGGTGTATAAGAGGCGCCACTTGTTGCGAAAGATAAG</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCCACCAATATTTTATCAGTTGACAAATTTTTGATATCTCTCAAAGCAACCGAGATAATTGAGCTTGATGGTTTGATACCGTAAAATACGTTATCTTTGCAGGGTCTGCAACCGCATGGACTTTTTGGACTTGGAGAGGAATTCAAAGACACTTGTCTAGACGATACGTGTAGCTCTTTGCTGGCACTTCAGTTGCTAACCCACACTTTGATTAAACCGGTTCCCAAGTTTTTGAAAGATGTTGTGATACCGTATGAAAAAAAGGAGAGAAGCATTTTCAGTCTCACAATTCCAGATACTTTGTAAAACTATTCCGTCTTCGAATGTACACAAGCAGAACTGAAGCAAAACGGGTTGAAGCTGAAGAAGATGACCAGGCCAATGTTTTAGTGAGGTAAAAAATTAGAAAAACGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACTGGAGTAGGAAGGTGGAGAGGGTGTATAAGAGGCGCCACTTGTTGCGAAAGATAAGAGGAGGGAATAATTGACTTGAGCTTGCAGAGAATGGTTGAAGCCAAGTGCTGGAGACTTCGTTTTATGGGAGATGAATGAGAAAATTATAATGTTCGGGACCACCATGATGTTTGCAAGTCTATTCCCTCTCTCACCACTTCTTGCTCTAATCATTGGTTTTGTGGATATGCGAATCGACGCGATCGTTTGATTTGGTTCAATCGGAAGCCGATTCCATTGATTACAAATGGTAATTTCCATTGGGATTACTGTAGAAAACAATAATTTTATTTTTAGGAATCGGAATATGGCTTCCAATTCTCACTTTCCTACAGTACTGCGCAGTTTTCACGAATGCTTTCATTGTTGCATTCACCTCGGGTTTCTGCTCGACATTCTTTGCCGATGGAGAGTATTGTACGGTTCAGAATCGCTTAATTATTGTTATAGTTTTCCAGGTTTGTCTATT</canonical>
            <polymorphic>AAGCCACCAATATTTTATCAGTTGACAAATTTTTGATATCTCTCAAAGCAACCGAGATAATTGAGCTTGATGGTTTGATACCGTAAAATACGTTATCTTTGCAGGGTCTGCAACCGCATGGACTTTTTGGACTTGGAGAGGAATTCAAAGACACTTGTCTAGACGATACGTGTAGCTCTTTGCTGGCACTTCAGTTGCTAACCCACACTTTGATTAAACCGGTTCCCAAGTTTTTGAAAGATGTTGTGATACCGTATGAAAAAAAGGAGAGAAGCATTTTCAGTCTCACAATTCCAGATACTTTGTAAAACTATTCCGTCTTCGAATGTACACAAGCAGAACTGAAGCAAAACGGGTTGAAGCTGAAGAAGATGACCAGGCCAATGTTTTAGTGAGGTAAAAAATTAGAAAAACGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACTGGAGWAGGAAGGTGGAGAGGGTGTATAAGAGGCGCCACTTGTTGCGAAAGATAAGAGGAGGGAATAATTGACTTGAGCTTGCAGAGAATGGTTGAAGCCAAGTGCTGGAGACTTCGTTTTATGGGAGATGAATGAGAAAATTATAATGTTCGGGACCACCATGATGTTTGCAAGTCTATTCCCTCTCTCACCACTTCTTGCTCTAATCATTGGTTTTGTGGATATGCGAATCGACGCGATCGTTTGATTTGGTTCAATCGGAAGCCGATTCCATTGATTACAAATGGTAATTTCCATTGGGATTACTGTAGAAAACAATAATTTTATTTTTAGGAATCGGAATATGGCTTCCAATTCTCACTTTCCTACAGTACTGCGCAGTTTTCACGAATGCTTTCATTGTTGCATTCACCTCGGGTTTCTGCTCGACATTCTTTGCCGATGGAGAGTATTGTACGGTTCAGAATCGCTTAATTATTGTTATAGTTTTCCAGGTTTGTCTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTACACAAGCAGAACTGAAG</pcr_primer_p1>
		<pcr_primer_p2>AAGTCAATTATTCCCTCCTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATGTACACAAGCAGAACTGAAGCAAAACGGGTTGAAGCTGAAGAAGATGACCAGGCCAATGTTTTAGTGAGGTAAAAAATTAGAAAAACGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACTGGAGTAGGAAGGTGGAGAGGGTGTATAAGAGGCGCCACTTGTTGCGAAAGATAAGAGGAGGGAATAATTGACTT</canonical_amplicon>
		<polymorphic_amplicon>AATGTACACAAGCAGAACTGAAGCAAAACGGGTTGAAGCTGAAGAAGATGACCAGGCCAATGTTTTAGTGAGGTAAAAAATTAGAAAAACGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACTGGAGWAGGAAGGTGGAGAGGGTGTATAAGAGGCGCCACTTGTTGCGAAAGATAAGAGGAGGGAATAATTGACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12446</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>62088</contig_pos>
        <strand>+</strand>
        <context>CTTTTACTTT[A/C]CCAGTATCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATAGCGTACTCAGTTTAGCTTCGTGATTGTACGACTTCTCTTTTACTTT</left_flank>
        <right_flank>CCAGTATCTACAACAAAGATGACGTCTTCAATGGTGATAGATGCTTCTGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCAGTGACAAACCGAACAGCAACATTCGAGAAAGTTGAGGATCCAATGGGAGTCGAGCCATTAATCGTCCTAAATCAGTCAACTCAGGATCCACTTCTTCGGTGGTTTCTTCATTTTCATTTTCATCTTCGTTTTGACCAGAATCATTATTTGGTCTGTAGAATGCGCCAAGTTGCTCCAAAAACGCCATTGATTGAATAATCGACTTTTCCTCTGGTGGTTCCGGTGCCAATGCCAAAAACTCAGAGATTTTCATGCAATTTGGAGCAAAAATTTTCGCATGAAGTGTCACATCGTAAATAGCCGCTCGTTTCATTTCAGCCATTTGTGTCTCTGGCATCGAATTGAATTTGGCTTCCGAATAAAGTCGAATACAGTAACCATTTCTTACTCTTCCTGCTCGTCCTGATCGCTGCTCTGCGTTGCTTCTAGCAATGGGTTTAACAGATAGCGTACTCAGTTTAGCTTCGTGATTGTACGACTTCTCTTTTACTTTACCAGTATCTACAACAAAGATGACGTCTTCAATGGTGATAGATGCTTCTGCAATGTTGGTTGCAAGAATCTGAATAACATATTTTAAACTGATATGAACCACGGTTTAAGGAACTTACAATCTTTCGAATATCACTGGTAACTGGTTTGAAGACGTCCGAATGATTGATACTATGCATCTGTGAATGAAGCGGAATAACGGATACATGTTTCATATTCTTTAAACCAAGCTTCCATTTGTCGATCTATAAATTTATCTATTTAGTTATTTTCTTAATTAGGAAAACATACTTTGCCCATCATAAGCTGAATATCATCAAAACCAGGTAGAAAAACCAAGATTGTTCCAAAGACCGGACTGTCCGCCAGATACTGTATGACGTGATCCAGAAGATGGTGATCGATAGAGTTCTCAAAGTCTGTTCCATAAAACATGTCATATTTTTCAGCGAAGCGAAGCTTGGCGAAATCGATACGTTCAACTAATTTATCCATATCTGTA</canonical>
            <polymorphic>ATTTCAGTGACAAACCGAACAGCAACATTCGAGAAAGTTGAGGATCCAATGGGAGTCGAGCCATTAATCGTCCTAAATCAGTCAACTCAGGATCCACTTCTTCGGTGGTTTCTTCATTTTCATTTTCATCTTCGTTTTGACCAGAATCATTATTTGGTCTGTAGAATGCGCCAAGTTGCTCCAAAAACGCCATTGATTGAATAATCGACTTTTCCTCTGGTGGTTCCGGTGCCAATGCCAAAAACTCAGAGATTTTCATGCAATTTGGAGCAAAAATTTTCGCATGAAGTGTCACATCGTAAATAGCCGCTCGTTTCATTTCAGCCATTTGTGTCTCTGGCATCGAATTGAATTTGGCTTCCGAATAAAGTCGAATACAGTAACCATTTCTTACTCTTCCTGCTCGTCCTGATCGCTGCTCTGCGTTGCTTCTAGCAATGGGTTTAACAGATAGCGTACTCAGTTTAGCTTCGTGATTGTACGACTTCTCTTTTACTTTMCCAGTATCTACAACAAAGATGACGTCTTCAATGGTGATAGATGCTTCTGCAATGTTGGTTGCAAGAATCTGAATAACATATTTTAAACTGATATGAACCACGGTTTAAGGAACTTACAATCTTTCGAATATCACTGGTAACTGGTTTGAAGACGTCCGAATGATTGATACTATGCATCTGTGAATGAAGCGGAATAACGGATACATGTTTCATATTCTTTAAACCAAGCTTCCATTTGTCGATCTATAAATTTATCTATTTAGTTATTTTCTTAATTAGGAAAACATACTTTGCCCATCATAAGCTGAATATCATCAAAACCAGGTAGAAAAACCAAGATTGTTCCAAAGACCGGACTGTCCGCCAGATACTGTATGACGTGATCCAGAAGATGGTGATCGATAGAGTTCTCAAAGTCTGTTCCATAAAACATGTCATATTTTTCAGCGAAGCGAAGCTTGGCGAAATCGATACGTTCAACTAATTTATCCATATCTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAGCAATGGGTTTAACAGATA</pcr_primer_p1>
		<pcr_primer_p2>ACAGATGCATAGTATCAATCATTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTAGCAATGGGTTTAACAGATAGCGTACTCAGTTTAGCTTCGTGATTGTACGACTTCTCTTTTACTTTACCAGTATCTACAACAAAGATGACGTCTTCAATGGTGATAGATGCTTCTGCAATGTTGGTTGCAAGAATCTGAATAACATATTTTAAACTGATATGAACCACGGTTTAAGGAACTTACAATCTTTCGAATATCACTGGTAACTGGTTTGAAGACGTCCGAATGATTGATACTATGCATCTGT</canonical_amplicon>
		<polymorphic_amplicon>TCTAGCAATGGGTTTAACAGATAGCGTACTCAGTTTAGCTTCGTGATTGTACGACTTCTCTTTTACTTTMCCAGTATCTACAACAAAGATGACGTCTTCAATGGTGATAGATGCTTCTGCAATGTTGGTTGCAAGAATCTGAATAACATATTTTAAACTGATATGAACCACGGTTTAAGGAACTTACAATCTTTCGAATATCACTGGTAACTGGTTTGAAGACGTCCGAATGATTGATACTATGCATCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12447</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>63829</contig_pos>
        <strand>+</strand>
        <context>ACACTACCTG[C/T]TCTCTAGCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTGAAACAAGATAATTCTACCGGATGATGGTTTTTGTTACACTACCTG</left_flank>
        <right_flank>TCTCTAGCCGAATCTTGTAGCCGACTGTATGGCCGAGAGATTCACCTCGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGTTTCAGAATTGTTGGATCTTTTATCTTCCTTTTGTATCTCCTTGATTTCTTCTTCCCATTCTTCTGTTTTAAACTCAACTCCTGAGAAGAAAACCTGATGTTCGGGAGGCTGATATCCAGACATAGCAAGAATCTGATCGATGTAGAACGTCTTCACATCGAAAGTGCGAGATTCGATACGAAGAACATCAACACTTTGATTTTGGAAATAACTCGAAAACAACTGCATGTTTCCCTCAATCGTCGCCGACATAAGAATCACTTTAAGATCTTTTCGATGCTTGAGACATTCACGCAAAGCGATGAGCAGATAGTCCGTATTAATTTCTCGCTCATGAATTTCGTCCATAATGATGTGGGTTATTCCAGAAGCGATGGGATCCGATGTGAGCATACGAAGAAGAACTCCAGTTGTGCAATACGTGAGAAGCGTCTTTTCTGACGATCTGAAACAAGATAATTCTACCGGATGATGGTTTTTGTTACACTACCTGTTCTCTAGCCGAATCTTGTAGCCGACTGTATGGCCGAGAGATTCACCTCGTTCTTTGGCGACACGCTCCGAAATGGAAATAGCCGCAAGACGTCGTGGTTGTGTCACCATAATGCGAACTTTCTTCTTCTTTTCAGCTGCATCGTCCAGAATGAACTGAGGAACTTGAGTTGTCTTTCCACATCCAGTGCCTCCGCTGATGATGACAACTTCGTTATCATCAATAGATTTCAAAACTTTCGTTTTATATTTCGACGCAGGTAACTTATCCCTAGAACGAATATACGTGTTATTTACATGGGTCATCTTCATACCTGATTTTCTTGAGATCCTTCGGACAAGCGGAGACCGGTGGAATTCCCGTCTTATTTCTAGACGAACCCGTTTTTGGCTGGAATTCTTTTGCGTTTTTCTGGTCGAAAAATCGATTCATATCATCTTCTGTGATAGGGTTGGCTTTAACAAATTCGTTAAGATGCGAAAGGCACTCGGGAGATGGGAT</canonical>
            <polymorphic>TTTCGTTTCAGAATTGTTGGATCTTTTATCTTCCTTTTGTATCTCCTTGATTTCTTCTTCCCATTCTTCTGTTTTAAACTCAACTCCTGAGAAGAAAACCTGATGTTCGGGAGGCTGATATCCAGACATAGCAAGAATCTGATCGATGTAGAACGTCTTCACATCGAAAGTGCGAGATTCGATACGAAGAACATCAACACTTTGATTTTGGAAATAACTCGAAAACAACTGCATGTTTCCCTCAATCGTCGCCGACATAAGAATCACTTTAAGATCTTTTCGATGCTTGAGACATTCACGCAAAGCGATGAGCAGATAGTCCGTATTAATTTCTCGCTCATGAATTTCGTCCATAATGATGTGGGTTATTCCAGAAGCGATGGGATCCGATGTGAGCATACGAAGAAGAACTCCAGTTGTGCAATACGTGAGAAGCGTCTTTTCTGACGATCTGAAACAAGATAATTCTACCGGATGATGGTTTTTGTTACACTACCTGYTCTCTAGCCGAATCTTGTAGCCGACTGTATGGCCGAGAGATTCACCTCGTTCTTTGGCGACACGCTCCGAAATGGAAATAGCCGCAAGACGTCGTGGTTGTGTCACCATAATGCGAACTTTCTTCTTCTTTTCAGCTGCATCGTCCAGAATGAACTGAGGAACTTGAGTTGTCTTTCCACATCCAGTGCCTCCGCTGATGATGACAACTTCGTTATCATCAATAGATTTCAAAACTTTCGTTTTATATTTCGACGCAGGTAACTTATCCCTAGAACGAATATACGTGTTATTTACATGGGTCATCTTCATACCTGATTTTCTTGAGATCCTTCGGACAAGCGGAGACCGGTGGAATTCCCGTCTTATTTCTAGACGAACCCGTTTTTGGCTGGAATTCTTTTGCGTTTTTCTGGTCGAAAAATCGATTCATATCATCTTCTGTGATAGGGTTGGCTTTAACAAATTCGTTAAGATGCGAAAGGCACTCGGGAGATGGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTGAGCATACGAAGAAGAAC</pcr_primer_p1>
		<pcr_primer_p2>CAGCTGAAAAGAAGAAGAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGTGAGCATACGAAGAAGAACTCCAGTTGTGCAATACGTGAGAAGCGTCTTTTCTGACGATCTGAAACAAGATAATTCTACCGGATGATGGTTTTTGTTACACTACCTGTTCTCTAGCCGAATCTTGTAGCCGACTGTATGGCCGAGAGATTCACCTCGTTCTTTGGCGACACGCTCCGAAATGGAAATAGCCGCAAGACGTCGTGGTTGTGTCACCATAATGCGAACTTTCTTCTTCTTTTCAGCTG</canonical_amplicon>
		<polymorphic_amplicon>ATGTGAGCATACGAAGAAGAACTCCAGTTGTGCAATACGTGAGAAGCGTCTTTTCTGACGATCTGAAACAAGATAATTCTACCGGATGATGGTTTTTGTTACACTACCTGYTCTCTAGCCGAATCTTGTAGCCGACTGTATGGCCGAGAGATTCACCTCGTTCTTTGGCGACACGCTCCGAAATGGAAATAGCCGCAAGACGTCGTGGTTGTGTCACCATAATGCGAACTTTCTTCTTCTTTTCAGCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12448</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>80108</contig_pos>
        <strand>+</strand>
        <context>TCAATATTCT[A/G]AAGATGGACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAAACAAGTCCACGAGAGGGATTTGAAACTTTAGATGTTCAATATTCT</left_flank>
        <right_flank>AAGATGGACGATTCATTATCCAACATGGGATCTGCCGAACGAACTGCGTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTGCCAATGGACGGTTCAGTAGTTTCGTGCAAATGCGAGGTTCAGTTCCGATGCGCTGGTCCCAGGATCCTTCTACACGTGGTGTTGTTGGGAAACCACTGATCTTGATCGACAATCATGAGCCACATGCACAAACAGCTGCGAGTCATTTTAGAGAAATCAGGAACAAATATGGAAACCCGATCATCATTATGAATCTGATAAAACGGAATGAAAAACGACGACACGAAGGAGTCTTACACACTCAGTTTTTGAAAAACATTGAGTACTTGAATCAGTTTTTGGATAGCGATGAAAAGCTCTGTTATCTTTCGTTCGATGTGGCAAGGTGTAATAAAGCAGCTAACGCGATGCCATCAATAAACGTGCTCAATGTTATGGAAGATCTTTCGATGAAGTCGGTTCTCAAAAATGGATGGTTTCAGTCGTTCCCACTAAACGAAGCTTTGAAAACAAGTCCACGAGAGGGATTTGAAACTTTAGATGTTCAATATTCTAAAGATGGACGATTCATTATCCAACATGGGATCTGCCGAACGAACTGCGTCGACTGTTTGGATCGCACAAATGTTGCTCAATTTGTGATTGCAAAAGTGGCTCTTGGATGCCAATTATGCGCTATGGGAATTCTGGATGAACCAAGTCTTTCATTGCAAAGCGAAGTTTGCCGTTTACTGGAAGATATGTTCGATGAACACGGCGACACAATGGCTCTACAATACGCCGGCAGTCAATTGGTACATTCCATTAAAACGTATAAGAAGACTGCAGCGTTCCAAGAGCGAAGAAGAGATGTCTTCCAAACGTTGTCCAGATATTACAGTAACACTTTCAATGATTGGGATAAACAAATGGCAATCAATCTATTTCTGGGAGTGTTTCGTCCGAAAATCACTTCGCTGAAAAATCTGTGGGACTTGACAACCGATTATAATCTACATTTCCCGTACCCATTGAAAATTCGTACTGATTATTGTGCATGGATTCTGACAGAGAAA</canonical>
            <polymorphic>TGTTGCCAATGGACGGTTCAGTAGTTTCGTGCAAATGCGAGGTTCAGTTCCGATGCGCTGGTCCCAGGATCCTTCTACACGTGGTGTTGTTGGGAAACCACTGATCTTGATCGACAATCATGAGCCACATGCACAAACAGCTGCGAGTCATTTTAGAGAAATCAGGAACAAATATGGAAACCCGATCATCATTATGAATCTGATAAAACGGAATGAAAAACGACGACACGAAGGAGTCTTACACACTCAGTTTTTGAAAAACATTGAGTACTTGAATCAGTTTTTGGATAGCGATGAAAAGCTCTGTTATCTTTCGTTCGATGTGGCAAGGTGTAATAAAGCAGCTAACGCGATGCCATCAATAAACGTGCTCAATGTTATGGAAGATCTTTCGATGAAGTCGGTTCTCAAAAATGGATGGTTTCAGTCGTTCCCACTAAACGAAGCTTTGAAAACAAGTCCACGAGAGGGATTTGAAACTTTAGATGTTCAATATTCTRAAGATGGACGATTCATTATCCAACATGGGATCTGCCGAACGAACTGCGTCGACTGTTTGGATCGCACAAATGTTGCTCAATTTGTGATTGCAAAAGTGGCTCTTGGATGCCAATTATGCGCTATGGGAATTCTGGATGAACCAAGTCTTTCATTGCAAAGCGAAGTTTGCCGTTTACTGGAAGATATGTTCGATGAACACGGCGACACAATGGCTCTACAATACGCCGGCAGTCAATTGGTACATTCCATTAAAACGTATAAGAAGACTGCAGCGTTCCAAGAGCGAAGAAGAGATGTCTTCCAAACGTTGTCCAGATATTACAGTAACACTTTCAATGATTGGGATAAACAAATGGCAATCAATCTATTTCTGGGAGTGTTTCGTCCGAAAATCACTTCGCTGAAAAATCTGTGGGACTTGACAACCGATTATAATCTACATTTCCCGTACCCATTGAAAATTCGTACTGATTATTGTGCATGGATTCTGACAGAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTTGAAAACAAGTCCAC</pcr_primer_p1>
		<pcr_primer_p2>CATCGAACATATCTTCCAGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAGCTTTGAAAACAAGTCCACGAGAGGGATTTGAAACTTTAGATGTTCAATATTCTAAAGATGGACGATTCATTATCCAACATGGGATCTGCCGAACGAACTGCGTCGACTGTTTGGATCGCACAAATGTTGCTCAATTTGTGATTGCAAAAGTGGCTCTTGGATGCCAATTATGCGCTATGGGAATTCTGGATGAACCAAGTCTTTCATTGCAAAGCGAAGTTTGCCGTTTACTGGAAGATATGTTCGATG</canonical_amplicon>
		<polymorphic_amplicon>AAGCTTTGAAAACAAGTCCACGAGAGGGATTTGAAACTTTAGATGTTCAATATTCTRAAGATGGACGATTCATTATCCAACATGGGATCTGCCGAACGAACTGCGTCGACTGTTTGGATCGCACAAATGTTGCTCAATTTGTGATTGCAAAAGTGGCTCTTGGATGCCAATTATGCGCTATGGGAATTCTGGATGAACCAAGTCTTTCATTGCAAAGCGAAGTTTGCCGTTTACTGGAAGATATGTTCGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12449</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>83241</contig_pos>
        <strand>+</strand>
        <context>AGAACGCTTC[A/T]CCGTTTCGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAACCAACATATCCATTATGAATGTATCCGGACGTCCAGAGAACGCTTC</left_flank>
        <right_flank>CCGTTTCGAACAATGTTCCGTTTCAACATCTGAAAATTATTACTGTTTCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCTCTTGTGGTTCTTGGAATTCCAAGGCTCAATGGTTTATCAAGATAAGCCAACCAAGGCCAAGCATCTAGAAGTTGAGTTTTGGGTGAGGTGAAGTGTTCTAGTACATCGTTGATTGCCACGTGGAAGTCAAGAATTTCCGTCTCATTCCATTCCCGAGTGAATCCGAACAAGTGCTTGTGAATCACATTTCCAACTACATGCTGAAAATTAGAAAATCGGAATTTCTAGAATTTTGAAATGTTTTTTCTAACCACAAGAAGAGGTCTCAATTCAATGGAACTGTCCTTCTGATTGTCAATTTTTTCAACCAATCCAGAAGCCAACGAAGCAATTGTATCCTGTGTTCCAGCTTGACCAACTCCAAGAGAACGGAAAATATGTGTGGTGAAGCGGCGTTGAGCTTTCCACCAATTATTTTCCATGAAGAAAAGACCGTAGTTTCCTTGAACCAACATATCCATTATGAATGTATCCGGACGTCCAGAGAACGCTTCTCCGTTTCGAACAATGTTCCGTTTCAACATCTGAAAATTATTACTGTTTCAATAGATCCCAAAATTATAAATTTCTTGTAAAGAATCGCTAAATATGTATATTTAGTTTTGGTTCAACTACAGTAACCGAAGAAAGCGGAAACGCCTTTAAACGGCAACAGAAAGACGCGAACATCATTACATTTATTTTCCCTTCCTTCTTCGCCAATCATTTATTTTATATTCTGATCATCAGATGATAAATTGATAACCAATATCAAACTGAACCTAAATATGGTACTGTAATGACGCAGCGATTTCTCGTATCTTCTTTTCTATCCATTCTTCCTTTTTTGTCACTTTCACCGTGACTTCTTCAAAGATCTGCATTTGATGGTTTGATCTGCACCTAATCTGCGCCCAGTCTATGATCAACATTGATACTTATTCTATCACCTATCATCAACTGTTTTCCGTTTTCTCTTCTTCTTCTTTTTTCCCCACGTGCGAATGGAGAAGTGT</canonical>
            <polymorphic>TGGCTCTTGTGGTTCTTGGAATTCCAAGGCTCAATGGTTTATCAAGATAAGCCAACCAAGGCCAAGCATCTAGAAGTTGAGTTTTGGGTGAGGTGAAGTGTTCTAGTACATCGTTGATTGCCACGTGGAAGTCAAGAATTTCCGTCTCATTCCATTCCCGAGTGAATCCGAACAAGTGCTTGTGAATCACATTTCCAACTACATGCTGAAAATTAGAAAATCGGAATTTCTAGAATTTTGAAATGTTTTTTCTAACCACAAGAAGAGGTCTCAATTCAATGGAACTGTCCTTCTGATTGTCAATTTTTTCAACCAATCCAGAAGCCAACGAAGCAATTGTATCCTGTGTTCCAGCTTGACCAACTCCAAGAGAACGGAAAATATGTGTGGTGAAGCGGCGTTGAGCTTTCCACCAATTATTTTCCATGAAGAAAAGACCGTAGTTTCCTTGAACCAACATATCCATTATGAATGTATCCGGACGTCCAGAGAACGCTTCWCCGTTTCGAACAATGTTCCGTTTCAACATCTGAAAATTATTACTGTTTCAATAGATCCCAAAATTATAAATTTCTTGTAAAGAATCGCTAAATATGTATATTTAGTTTTGGTTCAACTACAGTAACCGAAGAAAGCGGAAACGCCTTTAAACGGCAACAGAAAGACGCGAACATCATTACATTTATTTTCCCTTCCTTCTTCGCCAATCATTTATTTTATATTCTGATCATCAGATGATAAATTGATAACCAATATCAAACTGAACCTAAATATGGTACTGTAATGACGCAGCGATTTCTCGTATCTTCTTTTCTATCCATTCTTCCTTTTTTGTCACTTTCACCGTGACTTCTTCAAAGATCTGCATTTGATGGTTTGATCTGCACCTAATCTGCGCCCAGTCTATGATCAACATTGATACTTATTCTATCACCTATCATCAACTGTTTTCCGTTTTCTCTTCTTCTTCTTTTTTCCCCACGTGCGAATGGAGAAGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTTTCCTTGAACCAACATATC</pcr_primer_p1>
		<pcr_primer_p2>AAGGGAAAATAAATGTAATGATGT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TAGTTTCCTTGAACCAACATATCCATTATGAATGTATCCGGACGTCCAGAGAACGCTTCTCCGTTTCGAACAATGTTCCGTTTCAACATCTGAAAATTATTACTGTTTCAATAGATCCCAAAATTATAAATTTCTTGTAAAGAATCGCTAAATATGTATATTTAGTTTTGGTTCAACTACAGTAACCGAAGAAAGCGGAAACGCCTTTAAACGGCAACAGAAAGACGCGAACATCATTACATTTATTTTCCCTT</canonical_amplicon>
		<polymorphic_amplicon>TAGTTTCCTTGAACCAACATATCCATTATGAATGTATCCGGACGTCCAGAGAACGCTTCWCCGTTTCGAACAATGTTCCGTTTCAACATCTGAAAATTATTACTGTTTCAATAGATCCCAAAATTATAAATTTCTTGTAAAGAATCGCTAAATATGTATATTTAGTTTTGGTTCAACTACAGTAACCGAAGAAAGCGGAAACGCCTTTAAACGGCAACAGAAAGACGCGAACATCATTACATTTATTTTCCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12469</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>94525</contig_pos>
        <strand></strand>
        <context>GTATCTAAAT[T/G]CCGAAAATTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TCGCAAAGTCACTCTCACTACTTTTCATAGTTTTTTTTCGGTATCTAAAT</left_flank>
        <right_flank>CCGAAAATTGAAAATTATGTTCGAGTTCCAATAGTTTTCAATTCGGGAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGATTAAGCAGAGATAATTTGAACAACTAAATATTTCATTGAAAAAAAACGGACAGGGTTTTTATTATTATTTGCGGGGGCGACGGATCAAATATATCTTTTGGTGGTCATATGGCACGTCATCTATGAATGAGAACGGTGGGAAAATTCAACTTTCGAAGGATGAGTCGACCGTATTTTGTGTTTGCTGTGTTGTTTCGAGTGTATTGTCTGATTCATTCGGATTTCGAAGTAACAAACCACATGGCAAGAAAAGGGGAAGGAGGGCCGAAAAGGGATGGCAATGTGGGTTAATTGGATAATTAGTGTTTAATCGAATGAACTTTCATTGTCCAAACACTTCTCAAAATAATTTATCTTTTTTCCCAGATTAGAGAGAACAATTGCTAGGATTTTTGGCAAAAATTTAATTTTTTCAAAGAATATTTTTTGAATACTTTTGAATAGTTCGCAAAGTCACTCTCACTACTTTTCATAGTTTTTTTTCGGTATCTAAATTCCGAAAATTGAAAATTATGTTCGAGTTCCAATAGTTTTCAATTCGGGAATCGTGAAACTCAACCTTTCGGTTGAGCTTCTTTTTTCAAAACTTTCAAAGTTGAGAAAGTCAGAACTTTGAAAAATCTGTAAGTCAAAAACACCAGAAATCGGAAAATTTGAAATTCGGAAAATGAGACATTTCTGTGTTCATAACTCTTTAATTTGAGAATTCAGCCTATCGAAATATTTTGGAAATTTAGAAAATTTAAGTTCCGATGTTGAAAAACTCAATGAGTTGGGAAATCTCGAGTTTAAAATTTCAGAAAAGTTGTAAAAACTTTTCTGAATTATGAAGTTTTCAAATTAAATTAAATCCAAATCTGCAAAATTTGGACTTCCGAAACTTCTTTGGGTTTCTGAATCTCCGGACGTAGATTTTCCAATTTTCCGAAGTTCCGATATTTCGATTTCCAAATATTTGAATTCACTAATTTTTCAATATCCAAATTTATTACTTTC</canonical>
            <polymorphic>ACGATTAAGCAGAGATAATTTGAACAACTAAATATTTCATTGAAAAAAAACGGACAGGGTTTTTATTATTATTTGCGGGGGCGACGGATCAAATATATCTTTTGGTGGTCATATGGCACGTCATCTATGAATGAGAACGGTGGGAAAATTCAACTTTCGAAGGATGAGTCGACCGTATTTTGTGTTTGCTGTGTTGTTTCGAGTGTATTGTCTGATTCATTCGGATTTCGAAGTAACAAACCACATGGCAAGAAAAGGGGAAGGAGGGCCGAAAAGGGATGGCAATGTGGGTTAATTGGATAATTAGTGTTTAATCGAATGAACTTTCATTGTCCAAACACTTCTCAAAATAATTTATCTTTTTTCCCAGATTAGAGAGAACAATTGCTAGGATTTTTGGCAAAAATTTAATTTTTTCAAAGAATATTTTTTGAATACTTTTGAATAGTTCGCAAAGTCACTCTCACTACTTTTCATAGTTTTTTTTCGGTATCTAAATKCCGAAAATTGAAAATTATGTTCGAGTTCCAATAGTTTTCAATTCGGGAATCGTGAAACTCAACCTTTCGGTTGAGCTTCTTTTTTCAAAACTTTCAAAGTTGAGAAAGTCAGAACTTTGAAAAATCTGTAAGTCAAAAACACCAGAAATCGGAAAATTTGAAATTCGGAAAATGAGACATTTCTGTGTTCATAACTCTTTAATTTGAGAATTCAGCCTATCGAAATATTTTGGAAATTTAGAAAATTTAAGTTCCGATGTTGAAAAACTCAATGAGTTGGGAAATCTCGAGTTTAAAATTTCAGAAAAGTTGTAAAAACTTTTCTGAATTATGAAGTTTTCAAATTAAATTAAATCCAAATCTGCAAAATTTGGACTTCCGAAACTTCTTTGGGTTTCTGAATCTCCGGACGTAGATTTTCCAATTTTCCGAAGTTCCGATATTTCGATTTCCAAATATTTGAATTCACTAATTTTTCAATATCCAAATTTATTACTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>258 158 146 95 92 71 53 47 26 24 14 9 7</canonical_bands>
                <polymorphic_bands>258 250 146 95 71 53 47 26 24 14 9 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>279 213 109 88 62 55 48 40 31 22 19 16 10 8</canonical_bands>
                <polymorphic_bands>388 213 88 62 55 48 40 31 22 19 16 10 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>147 130 115 87 55 53 50 40 39 31 30 27 26 22 20 16 16 16 14 9 9 8 8 8 7 7 5 5</canonical_bands>
                <polymorphic_bands>147 130 115 96 55 53 50 40 39 31 30 27 26 22 20 16 16 16 14 9 8 8 8 7 7 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGAGAGAACAATTGCTAGGAT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAGTTCTGACTTTCTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAGAGAGAACAATTGCTAGGATTTTTGGCAAAAATTTAATTTTTTCAAAGAATATTTTTTGAATACTTTTGAATAGTTCGCAAAGTCACTCTCACTACTTTTCATAGTTTTTTTTCGGTATCTAAATTCCGAAAATTGAAAATTATGTTCGAGTTCCAATAGTTTTCAATTCGGGAATCGTGAAACTCAACCTTTCGGTTGAGCTTCTTTTTTCAAAACTTTCAAAGTTGAGAAAGTCAGAACTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>TTAGAGAGAACAATTGCTAGGATTTTTGGCAAAAATTTAATTTTTTCAAAGAATATTTTTTGAATACTTTTGAATAGTTCGCAAAGTCACTCTCACTACTTTTCATAGTTTTTTTTCGGTATCTAAATKCCGAAAATTGAAAATTATGTTCGAGTTCCAATAGTTTTCAATTCGGGAATCGTGAAACTCAACCTTTCGGTTGAGCTTCTTTTTTCAAAACTTTCAAAGTTGAGAAAGTCAGAACTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12470</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>94385</contig_pos>
        <strand>+</strand>
        <context>ATAATTTATC[C/T]TTTTTCCCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTAATCGAATGAACTTTCATTGTCCAAACACTTCTCAAAATAATTTATC</left_flank>
        <right_flank>TTTTTCCCAGATTAGAGAGAACAATTGCTAGGATTTTTGGCAAAAATTTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATACGTTCTTTTCGGAGACTCCAGCCGGAAAACACGTTCCTCGTGCCATATTCGTGGATCTTGAGCCGACTGTGGTCGATGAGGTACTTTTTTTTGTTTTTTTGTTGGTTCTTTTTTAATCCTATATCCATTCACCGAACGATTAAGCAGAGATAATTTGAACAACTAAATATTTCATTGAAAAAAAACGGACAGGGTTTTTATTATTATTTGCGGGGGCGACGGATCAAATATATCTTTTGGTGGTCATATGGCACGTCATCTATGAATGAGAACGGTGGGAAAATTCAACTTTCGAAGGATGAGTCGACCGTATTTTGTGTTTGCTGTGTTGTTTCGAGTGTATTGTCTGATTCATTCGGATTTCGAAGTAACAAACCACATGGCAAGAAAAGGGGAAGGAGGGCCGAAAAGGGATGGCAATGTGGGTTAATTGGATAATTAGTGTTTAATCGAATGAACTTTCATTGTCCAAACACTTCTCAAAATAATTTATCTTTTTTCCCAGATTAGAGAGAACAATTGCTAGGATTTTTGGCAAAAATTTAATTTTTTCAAAGAATATTTTTTGAATACTTTTGAATAGTTCGCAAAGTCACTCTCACTACTTTTCATAGTTTTTTTTCGGTATCTAAATTCCGAAAATTGAAAATTATGTTCGAGTTCCAATAGTTTTCAATTCGGGAATCGTGAAACTCAACCTTTCGGTTGAGCTTCTTTTTTCAAAACTTTCAAAGTTGAGAAAGTCAGAACTTTGAAAAATCTGTAAGTCAAAAACACCAGAAATCGGAAAATTTGAAATTCGGAAAATGAGACATTTCTGTGTTCATAACTCTTTAATTTGAGAATTCAGCCTATCGAAATATTTTGGAAATTTAGAAAATTTAAGTTCCGATGTTGAAAAACTCAATGAGTTGGGAAATCTCGAGTTTAAAATTTCAGAAAAGTTGTAAAAACTTTTCTGAATTATGAAGTTTTCAAATTAAATTAAATCCAAA</canonical>
            <polymorphic>TAATACGTTCTTTTCGGAGACTCCAGCCGGAAAACACGTTCCTCGTGCCATATTCGTGGATCTTGAGCCGACTGTGGTCGATGAGGTACTTTTTTTTGTTTTTTTGTTGGTTCTTTTTTAATCCTATATCCATTCACCGAACGATTAAGCAGAGATAATTTGAACAACTAAATATTTCATTGAAAAAAAACGGACAGGGTTTTTATTATTATTTGCGGGGGCGACGGATCAAATATATCTTTTGGTGGTCATATGGCACGTCATCTATGAATGAGAACGGTGGGAAAATTCAACTTTCGAAGGATGAGTCGACCGTATTTTGTGTTTGCTGTGTTGTTTCGAGTGTATTGTCTGATTCATTCGGATTTCGAAGTAACAAACCACATGGCAAGAAAAGGGGAAGGAGGGCCGAAAAGGGATGGCAATGTGGGTTAATTGGATAATTAGTGTTTAATCGAATGAACTTTCATTGTCCAAACACTTCTCAAAATAATTTATCYTTTTTCCCAGATTAGAGAGAACAATTGCTAGGATTTTTGGCAAAAATTTAATTTTTTCAAAGAATATTTTTTGAATACTTTTGAATAGTTCGCAAAGTCACTCTCACTACTTTTCATAGTTTTTTTTCGGTATCTAAATTCCGAAAATTGAAAATTATGTTCGAGTTCCAATAGTTTTCAATTCGGGAATCGTGAAACTCAACCTTTCGGTTGAGCTTCTTTTTTCAAAACTTTCAAAGTTGAGAAAGTCAGAACTTTGAAAAATCTGTAAGTCAAAAACACCAGAAATCGGAAAATTTGAAATTCGGAAAATGAGACATTTCTGTGTTCATAACTCTTTAATTTGAGAATTCAGCCTATCGAAATATTTTGGAAATTTAGAAAATTTAAGTTCCGATGTTGAAAAACTCAATGAGTTGGGAAATCTCGAGTTTAAAATTTCAGAAAAGTTGTAAAAACTTTTCTGAATTATGAAGTTTTCAAATTAAATTAAATCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCGAAGTAACAAACCACAT</pcr_primer_p1>
		<pcr_primer_p2>TGAAAAGTAGTGAGAGTGACTTTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTTCGAAGTAACAAACCACATGGCAAGAAAAGGGGAAGGAGGGCCGAAAAGGGATGGCAATGTGGGTTAATTGGATAATTAGTGTTTAATCGAATGAACTTTCATTGTCCAAACACTTCTCAAAATAATTTATCTTTTTTCCCAGATTAGAGAGAACAATTGCTAGGATTTTTGGCAAAAATTTAATTTTTTCAAAGAATATTTTTTGAATACTTTTGAATAGTTCGCAAAGTCACTCTCACTACTTTTCA</canonical_amplicon>
		<polymorphic_amplicon>ATTTCGAAGTAACAAACCACATGGCAAGAAAAGGGGAAGGAGGGCCGAAAAGGGATGGCAATGTGGGTTAATTGGATAATTAGTGTTTAATCGAATGAACTTTCATTGTCCAAACACTTCTCAAAATAATTTATCYTTTTTCCCAGATTAGAGAGAACAATTGCTAGGATTTTTGGCAAAAATTTAATTTTTTCAAAGAATATTTTTTGAATACTTTTGAATAGTTCGCAAAGTCACTCTCACTACTTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12471</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>94317</contig_pos>
        <strand>+</strand>
        <context>GCAATGTGGG[C/T]TAATTGGATA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACATGGCAAGAAAAGGGGAAGGAGGGCCGAAAAGGGATGGCAATGTGGG</left_flank>
        <right_flank>TAATTGGATAATTAGTGTTTAATCGAATGAACTTTCATTGTCCAAACACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACACGGAATCACTCCAGGTGGACTGATGCCAGATGATACGAGTTTCGGAGTCGAGGATCAATCATATAATACGTTCTTTTCGGAGACTCCAGCCGGAAAACACGTTCCTCGTGCCATATTCGTGGATCTTGAGCCGACTGTGGTCGATGAGGTACTTTTTTTTGTTTTTTTGTTGGTTCTTTTTTAATCCTATATCCATTCACCGAACGATTAAGCAGAGATAATTTGAACAACTAAATATTTCATTGAAAAAAAACGGACAGGGTTTTTATTATTATTTGCGGGGGCGACGGATCAAATATATCTTTTGGTGGTCATATGGCACGTCATCTATGAATGAGAACGGTGGGAAAATTCAACTTTCGAAGGATGAGTCGACCGTATTTTGTGTTTGCTGTGTTGTTTCGAGTGTATTGTCTGATTCATTCGGATTTCGAAGTAACAAACCACATGGCAAGAAAAGGGGAAGGAGGGCCGAAAAGGGATGGCAATGTGGGTTAATTGGATAATTAGTGTTTAATCGAATGAACTTTCATTGTCCAAACACTTCTCAAAATAATTTATCTTTTTTCCCAGATTAGAGAGAACAATTGCTAGGATTTTTGGCAAAAATTTAATTTTTTCAAAGAATATTTTTTGAATACTTTTGAATAGTTCGCAAAGTCACTCTCACTACTTTTCATAGTTTTTTTTCGGTATCTAAATTCCGAAAATTGAAAATTATGTTCGAGTTCCAATAGTTTTCAATTCGGGAATCGTGAAACTCAACCTTTCGGTTGAGCTTCTTTTTTCAAAACTTTCAAAGTTGAGAAAGTCAGAACTTTGAAAAATCTGTAAGTCAAAAACACCAGAAATCGGAAAATTTGAAATTCGGAAAATGAGACATTTCTGTGTTCATAACTCTTTAATTTGAGAATTCAGCCTATCGAAATATTTTGGAAATTTAGAAAATTTAAGTTCCGATGTTGAAAAACTCAATGAGTTGGGAAATCTCGAGT</canonical>
            <polymorphic>GAACACGGAATCACTCCAGGTGGACTGATGCCAGATGATACGAGTTTCGGAGTCGAGGATCAATCATATAATACGTTCTTTTCGGAGACTCCAGCCGGAAAACACGTTCCTCGTGCCATATTCGTGGATCTTGAGCCGACTGTGGTCGATGAGGTACTTTTTTTTGTTTTTTTGTTGGTTCTTTTTTAATCCTATATCCATTCACCGAACGATTAAGCAGAGATAATTTGAACAACTAAATATTTCATTGAAAAAAAACGGACAGGGTTTTTATTATTATTTGCGGGGGCGACGGATCAAATATATCTTTTGGTGGTCATATGGCACGTCATCTATGAATGAGAACGGTGGGAAAATTCAACTTTCGAAGGATGAGTCGACCGTATTTTGTGTTTGCTGTGTTGTTTCGAGTGTATTGTCTGATTCATTCGGATTTCGAAGTAACAAACCACATGGCAAGAAAAGGGGAAGGAGGGCCGAAAAGGGATGGCAATGTGGGYTAATTGGATAATTAGTGTTTAATCGAATGAACTTTCATTGTCCAAACACTTCTCAAAATAATTTATCTTTTTTCCCAGATTAGAGAGAACAATTGCTAGGATTTTTGGCAAAAATTTAATTTTTTCAAAGAATATTTTTTGAATACTTTTGAATAGTTCGCAAAGTCACTCTCACTACTTTTCATAGTTTTTTTTCGGTATCTAAATTCCGAAAATTGAAAATTATGTTCGAGTTCCAATAGTTTTCAATTCGGGAATCGTGAAACTCAACCTTTCGGTTGAGCTTCTTTTTTCAAAACTTTCAAAGTTGAGAAAGTCAGAACTTTGAAAAATCTGTAAGTCAAAAACACCAGAAATCGGAAAATTTGAAATTCGGAAAATGAGACATTTCTGTGTTCATAACTCTTTAATTTGAGAATTCAGCCTATCGAAATATTTTGGAAATTTAGAAAATTTAAGTTCCGATGTTGAAAAACTCAATGAGTTGGGAAATCTCGAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>291 287 186 97 48 45 27 19</canonical_bands>
                <polymorphic_bands>306 291 186 97 48 45 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCGAAGTAACAAACCACAT</pcr_primer_p1>
		<pcr_primer_p2>TGAAAAGTAGTGAGAGTGACTTTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTTCGAAGTAACAAACCACATGGCAAGAAAAGGGGAAGGAGGGCCGAAAAGGGATGGCAATGTGGGTTAATTGGATAATTAGTGTTTAATCGAATGAACTTTCATTGTCCAAACACTTCTCAAAATAATTTATCTTTTTTCCCAGATTAGAGAGAACAATTGCTAGGATTTTTGGCAAAAATTTAATTTTTTCAAAGAATATTTTTTGAATACTTTTGAATAGTTCGCAAAGTCACTCTCACTACTTTTCA</canonical_amplicon>
		<polymorphic_amplicon>ATTTCGAAGTAACAAACCACATGGCAAGAAAAGGGGAAGGAGGGCCGAAAAGGGATGGCAATGTGGGYTAATTGGATAATTAGTGTTTAATCGAATGAACTTTCATTGTCCAAACACTTCTCAAAATAATTTATCTTTTTTCCCAGATTAGAGAGAACAATTGCTAGGATTTTTGGCAAAAATTTAATTTTTTCAAAGAATATTTTTTGAATACTTTTGAATAGTTCGCAAAGTCACTCTCACTACTTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12472</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>112731</contig_pos>
        <strand>+</strand>
        <context>ACTCACAGCT[A/G]CTGAAGAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCATATGTTCCTCTCTATCTCATCGTTTTGTTCCATCCCACTCACAGCT</left_flank>
        <right_flank>CTGAAGAAGATCCCTATCGTGGGCACATCTTCGCCGCCTCCCCCGTTCGG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCAAAATTTTTTATATTCATAATTCCGTAAAACCTGTAATAGAAGGGCCCCCACACTGTCAAGTTTGAGCTCATTTTTTTGGATCCTATGCCAAATATCAAAAAATGTGTAAACTGATAAACTTTTTGGGATACTATGATGAACATTTTATTAGTTGACAACTTTTGATATCTTTGACAGGAACCGAGATAAATTGGCTCAAAGTTAGGGGTCCTTCTATTACAGGTTTTACGGTTTTCAGAATTTATCACGCTGTTCCTTCATGCTGGTCACTACCTTCAAAATTTCCAACAGTCTCAATTCATGACTGTAGATTGCCCTTTTTAGAATAATCCACTTTTTCATCATATTTGAATTCCGAAATTTCGATGGAATCACACTTTTTCTCCGTCATCGACAGCATTGGTATTCATTCGGCCGCAGCTTGTCCTTCTATGATATACTGTCATTCATATGTTCCTCTCTATCTCATCGTTTTGTTCCATCCCACTCACAGCTACTGAAGAAGATCCCTATCGTGGGCACATCTTCGCCGCCTCCCCCGTTCGGATTCGGTTATCGCATCTGCGTGTGTCTTCGCCTCAAAACAACCGCGAAACACCCATCATCCGAATGGCGGCGTTCAGAATCTCATCAGAATGTCCTTTTCAGTTATGGATTTGGATCTTCACTCTAGAGTTATGAAATTAGAGTAGAACCATCTGAACTTAATCTCAACACTGATAATAACACCTTAATGTTTTAATGGTGTGGAACTATCAGGAAAATTGGGGGTTTAGTCTAAATTTGCACAACGCCATTCCAAAGATAACCAAGTTTTGTTTATTCTAATTTGAAAAAAACAGTCTATTGTATTGTATACATCCATTTTGAGCTGAATTATTTCAATTTCTATAAGAGATATCAAAATTTCATCAACTGATAAAATACTGATAATTTAACGAGAAAAACTTTATCAGTTGACAACTTTTTGATATCTTCTGAGGGAACCGAGATAAA</canonical>
            <polymorphic>GTCAAAATTTTTTATATTCATAATTCCGTAAAACCTGTAATAGAAGGGCCCCCACACTGTCAAGTTTGAGCTCATTTTTTTGGATCCTATGCCAAATATCAAAAAATGTGTAAACTGATAAACTTTTTGGGATACTATGATGAACATTTTATTAGTTGACAACTTTTGATATCTTTGACAGGAACCGAGATAAATTGGCTCAAAGTTAGGGGTCCTTCTATTACAGGTTTTACGGTTTTCAGAATTTATCACGCTGTTCCTTCATGCTGGTCACTACCTTCAAAATTTCCAACAGTCTCAATTCATGACTGTAGATTGCCCTTTTTAGAATAATCCACTTTTTCATCATATTTGAATTCCGAAATTTCGATGGAATCACACTTTTTCTCCGTCATCGACAGCATTGGTATTCATTCGGCCGCAGCTTGTCCTTCTATGATATACTGTCATTCATATGTTCCTCTCTATCTCATCGTTTTGTTCCATCCCACTCACAGCTRCTGAAGAAGATCCCTATCGTGGGCACATCTTCGCCGCCTCCCCCGTTCGGATTCGGTTATCGCATCTGCGTGTGTCTTCGCCTCAAAACAACCGCGAAACACCCATCATCCGAATGGCGGCGTTCAGAATCTCATCAGAATGTCCTTTTCAGTTATGGATTTGGATCTTCACTCTAGAGTTATGAAATTAGAGTAGAACCATCTGAACTTAATCTCAACACTGATAATAACACCTTAATGTTTTAATGGTGTGGAACTATCAGGAAAATTGGGGGTTTAGTCTAAATTTGCACAACGCCATTCCAAAGATAACCAAGTTTTGTTTATTCTAATTTGAAAAAAACAGTCTATTGTATTGTATACATCCATTTTGAGCTGAATTATTTCAATTTCTATAAGAGATATCAAAATTTCATCAACTGATAAAATACTGATAATTTAACGAGAAAAACTTTATCAGTTGACAACTTTTTGATATCTTCTGAGGGAACCGAGATAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTGTCCTTCTATGATATACTGTC</pcr_primer_p1>
		<pcr_primer_p2>AGTGAAGATCCAAATCCATAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTTGTCCTTCTATGATATACTGTCATTCATATGTTCCTCTCTATCTCATCGTTTTGTTCCATCCCACTCACAGCTACTGAAGAAGATCCCTATCGTGGGCACATCTTCGCCGCCTCCCCCGTTCGGATTCGGTTATCGCATCTGCGTGTGTCTTCGCCTCAAAACAACCGCGAAACACCCATCATCCGAATGGCGGCGTTCAGAATCTCATCAGAATGTCCTTTTCAGTTATGGATTTGGATCTTCACT</canonical_amplicon>
		<polymorphic_amplicon>GCTTGTCCTTCTATGATATACTGTCATTCATATGTTCCTCTCTATCTCATCGTTTTGTTCCATCCCACTCACAGCTRCTGAAGAAGATCCCTATCGTGGGCACATCTTCGCCGCCTCCCCCGTTCGGATTCGGTTATCGCATCTGCGTGTGTCTTCGCCTCAAAACAACCGCGAAACACCCATCATCCGAATGGCGGCGTTCAGAATCTCATCAGAATGTCCTTTTCAGTTATGGATTTGGATCTTCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12473</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>118565</contig_pos>
        <strand>+</strand>
        <context>AAATGCAAAT[G/T]TTACCAAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGGCAAAAAAATACCTTCGTCATTTGTTTTGAAGATTGCAAATGCAAAT</left_flank>
        <right_flank>TTACCAAACTTTTTATCAAACATGGGAGCCAAAAACTAATGATATCATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAAACAATGCACATTTCATATTTCTTTTTTCTTCTTCTTGCAGGCCGAAAATTCCATTTGACAATCGTTATACACTCGTCACCGATGATGGTGGCCACCGTCAAAAATGTGATCAAGGTAAGTGGGAATTGGGTTTCGAAGAATCTTGGGGGTTGGGGAAAGAAAAGAAGCAGAAAGGTTGGAATACGGTAGGTGCCTTACCTTTTCAAGAACTCTTTCAACAACTCCATTTTACTAATTTCATTAAACTATTCCTATTATTCTTAAGGATACTTATAGTTAGAAACTCAGAAAGTATTATGCAAATCAGTCAGTTCTCTTTTTTTTACAAACATGTACCACAAATTATTTTCCCATGTGAGGTCCTCCCCTTCCTGCCTACAGTAGTCTTTTACTACTCTTATCTGATTAACCACATCAACGATGTGTCATCAGTTGCCTTCTTTTATGGCAAAAAAATACCTTCGTCATTTGTTTTGAAGATTGCAAATGCAAATTTTACCAAACTTTTTATCAAACATGGGAGCCAAAAACTAATGATATCATTTTCAGGTTACTGTAGACGGACCAAGGGATGCGAGAATTCCAAAACCATCGGGGTGTACTAAACGACAAGAACAACAACAGACACCCACAATTTTCCCATGTGATATTCTTCAGTCCTCGACTCCATCAGTAAGAGATTGTAATCCTTAATTGAACTTTTATTATTATTTCAGATGCCAATGATTCCTCCGCCTTGGTGGACTCTTGCACCAAATCTACCGTAAGAATACAATAATTTTCAACCGAAACTGTCGAACAAAAACTTTCAGACCGCTCACTCTCCCGTTAATGACTCCAGGAGTACCGTCAATTTCAGCAGCTCTTTGGAAATTGCACAACGATTCAATGAGAACTCCAATTAAGAGAAAACATGAGCAAGAAAATTGTATGTGATAAACCTTGAAAAAAAAACCCTAGATATCGCTGTTTTCTAGTTTCACTAAACACCTCCA</canonical>
            <polymorphic>ATAAAACAATGCACATTTCATATTTCTTTTTTCTTCTTCTTGCAGGCCGAAAATTCCATTTGACAATCGTTATACACTCGTCACCGATGATGGTGGCCACCGTCAAAAATGTGATCAAGGTAAGTGGGAATTGGGTTTCGAAGAATCTTGGGGGTTGGGGAAAGAAAAGAAGCAGAAAGGTTGGAATACGGTAGGTGCCTTACCTTTTCAAGAACTCTTTCAACAACTCCATTTTACTAATTTCATTAAACTATTCCTATTATTCTTAAGGATACTTATAGTTAGAAACTCAGAAAGTATTATGCAAATCAGTCAGTTCTCTTTTTTTTACAAACATGTACCACAAATTATTTTCCCATGTGAGGTCCTCCCCTTCCTGCCTACAGTAGTCTTTTACTACTCTTATCTGATTAACCACATCAACGATGTGTCATCAGTTGCCTTCTTTTATGGCAAAAAAATACCTTCGTCATTTGTTTTGAAGATTGCAAATGCAAATKTTACCAAACTTTTTATCAAACATGGGAGCCAAAAACTAATGATATCATTTTCAGGTTACTGTAGACGGACCAAGGGATGCGAGAATTCCAAAACCATCGGGGTGTACTAAACGACAAGAACAACAACAGACACCCACAATTTTCCCATGTGATATTCTTCAGTCCTCGACTCCATCAGTAAGAGATTGTAATCCTTAATTGAACTTTTATTATTATTTCAGATGCCAATGATTCCTCCGCCTTGGTGGACTCTTGCACCAAATCTACCGTAAGAATACAATAATTTTCAACCGAAACTGTCGAACAAAAACTTTCAGACCGCTCACTCTCCCGTTAATGACTCCAGGAGTACCGTCAATTTCAGCAGCTCTTTGGAAATTGCACAACGATTCAATGAGAACTCCAATTAAGAGAAAACATGAGCAAGAAAATTGTATGTGATAAACCTTGAAAAAAAAACCCTAGATATCGCTGTTTTCTAGTTTCACTAAACACCTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>445 417 87 51</canonical_bands>
                <polymorphic_bands>532 417 51</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>151 110 107 87 85 77 75 71 59 54 51 28 25 20</canonical_bands>
                <polymorphic_bands>238 110 107 85 77 75 71 59 54 51 28 25 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCTGCCTACAGTAGTCTTTTA</pcr_primer_p1>
		<pcr_primer_p2>TTGTTCTTGTCGTTTAGTACACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCCTGCCTACAGTAGTCTTTTACTACTCTTATCTGATTAACCACATCAACGATGTGTCATCAGTTGCCTTCTTTTATGGCAAAAAAATACCTTCGTCATTTGTTTTGAAGATTGCAAATGCAAATTTTACCAAACTTTTTATCAAACATGGGAGCCAAAAACTAATGATATCATTTTCAGGTTACTGTAGACGGACCAAGGGATGCGAGAATTCCAAAACCATCGGGGTGTACTAAACGACAAGAACAA</canonical_amplicon>
		<polymorphic_amplicon>TTCCTGCCTACAGTAGTCTTTTACTACTCTTATCTGATTAACCACATCAACGATGTGTCATCAGTTGCCTTCTTTTATGGCAAAAAAATACCTTCGTCATTTGTTTTGAAGATTGCAAATGCAAATKTTACCAAACTTTTTATCAAACATGGGAGCCAAAAACTAATGATATCATTTTCAGGTTACTGTAGACGGACCAAGGGATGCGAGAATTCCAAAACCATCGGGGTGTACTAAACGACAAGAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12474</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>163926</contig_pos>
        <strand>+</strand>
        <context>GCACAACAGA[A/G]ACTAAACTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGACGGCCCGGTATCTCCCCAAGACCACCATAAACCTGCAGCACAACAGA</left_flank>
        <right_flank>ACTAAACTTGAGATCTGGTCCGAAAAGTGTGGAAAAGTTTGCTAAGGCAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATCCTCGAAGATCACGGTTGCAAATCTTTTCAGCAAACTCTAGTCGTTGGATTGGTGTTGAGGTTGCCATTTTTATCTTCAATTTGTGATAATCAGAGAAAAATTCAGGAAGAGATCTTTATTAAAAGCCATGTCTAAAAATAACCCAAGAACATTATATTTTGTCCGAGAGAACTACACGGCTGAAGTAGATAAGCTAGGCCAGGGGTATGGCAATTATTTGAAGCATTTTCTATGGTTAGGTGTTACGGTCATTGAGCACTGTTTCTTTCTTATGAACTACCTGGCTATTTAAAAAGTTCAATTTTGCAGGTACTCAGAAATGCATTTCATTGCAGGAATTGCAGTAATAGCCTCTTTATGTATATTGATTTTCGCAGAAAGAGAACGGGTGGTTAGTTTATAATGTAGTTTCTAGGAAATACGATTGAAATTAATATTTAAGACAGACGGCCCGGTATCTCCCCAAGACCACCATAAACCTGCAGCACAACAGAAACTAAACTTGAGATCTGGTCCGAAAAGTGTGGAAAAGTTTGCTAAGGCACTAGATACCAATAACGATGGCTTTGTTGGTCCGTTGGGTAGAAATATAATATCTTTCTAAATGAATGAATTTCAGATAAAAATGAACTTCTTGCTTGGGTATCTGAATCATATCAGAAAACAGTTGACAGAGAAGCAGTGGAGAGAATGAGTGAATTGGATGAGAATGCGGATGGATTTGTATGTTCGATTTATTCTGAAACCTATTTGGAAAATATATTGATTCGCAGGTTTCATGGGAAGAATACCTCTTAGATTCATTTCCAGAAGAAGAATTGCACAATAAGGAGGAAGAAACTCTCATCGCACAAGATAGAATGTACTTCAAGCGTTAGTACTACAAGAATCGATTTTGATTGATTTTAAATCTTCTTTTTTTCAGAAGCAGATCAAGATGATGATGGGAAATTGAATTTAGAAGAACTTGCTAGTTTTCTGAATCCTGAACATCA</canonical>
            <polymorphic>ATATCCTCGAAGATCACGGTTGCAAATCTTTTCAGCAAACTCTAGTCGTTGGATTGGTGTTGAGGTTGCCATTTTTATCTTCAATTTGTGATAATCAGAGAAAAATTCAGGAAGAGATCTTTATTAAAAGCCATGTCTAAAAATAACCCAAGAACATTATATTTTGTCCGAGAGAACTACACGGCTGAAGTAGATAAGCTAGGCCAGGGGTATGGCAATTATTTGAAGCATTTTCTATGGTTAGGTGTTACGGTCATTGAGCACTGTTTCTTTCTTATGAACTACCTGGCTATTTAAAAAGTTCAATTTTGCAGGTACTCAGAAATGCATTTCATTGCAGGAATTGCAGTAATAGCCTCTTTATGTATATTGATTTTCGCAGAAAGAGAACGGGTGGTTAGTTTATAATGTAGTTTCTAGGAAATACGATTGAAATTAATATTTAAGACAGACGGCCCGGTATCTCCCCAAGACCACCATAAACCTGCAGCACAACAGARACTAAACTTGAGATCTGGTCCGAAAAGTGTGGAAAAGTTTGCTAAGGCACTAGATACCAATAACGATGGCTTTGTTGGTCCGTTGGGTAGAAATATAATATCTTTCTAAATGAATGAATTTCAGATAAAAATGAACTTCTTGCTTGGGTATCTGAATCATATCAGAAAACAGTTGACAGAGAAGCAGTGGAGAGAATGAGTGAATTGGATGAGAATGCGGATGGATTTGTATGTTCGATTTATTCTGAAACCTATTTGGAAAATATATTGATTCGCAGGTTTCATGGGAAGAATACCTCTTAGATTCATTTCCAGAAGAAGAATTGCACAATAAGGAGGAAGAAACTCTCATCGCACAAGATAGAATGTACTTCAAGCGTTAGTACTACAAGAATCGATTTTGATTGATTTTAAATCTTCTTTTTTTCAGAAGCAGATCAAGATGATGATGGGAAATTGAATTTAGAAGAACTTGCTAGTTTTCTGAATCCTGAACATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACGGGTGGTTAGTTTATAATG</pcr_primer_p1>
		<pcr_primer_p2>TTCATTTTTATCTGAAATTCATTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AACGGGTGGTTAGTTTATAATGTAGTTTCTAGGAAATACGATTGAAATTAATATTTAAGACAGACGGCCCGGTATCTCCCCAAGACCACCATAAACCTGCAGCACAACAGAAACTAAACTTGAGATCTGGTCCGAAAAGTGTGGAAAAGTTTGCTAAGGCACTAGATACCAATAACGATGGCTTTGTTGGTCCGTTGGGTAGAAATATAATATCTTTCTAAATGAATGAATTTCAGATAAAAATGAA</canonical_amplicon>
		<polymorphic_amplicon>AACGGGTGGTTAGTTTATAATGTAGTTTCTAGGAAATACGATTGAAATTAATATTTAAGACAGACGGCCCGGTATCTCCCCAAGACCACCATAAACCTGCAGCACAACAGARACTAAACTTGAGATCTGGTCCGAAAAGTGTGGAAAAGTTTGCTAAGGCACTAGATACCAATAACGATGGCTTTGTTGGTCCGTTGGGTAGAAATATAATATCTTTCTAAATGAATGAATTTCAGATAAAAATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12475</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>163996</contig_pos>
        <strand>+</strand>
        <context>ATAACGATGG[C/T]TTTGTTGGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGAAAAGTGTGGAAAAGTTTGCTAAGGCACTAGATACCAATAACGATGG</left_flank>
        <right_flank>TTTGTTGGTCCGTTGGGTAGAAATATAATATCTTTCTAAATGAATGAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTATCTTCAATTTGTGATAATCAGAGAAAAATTCAGGAAGAGATCTTTATTAAAAGCCATGTCTAAAAATAACCCAAGAACATTATATTTTGTCCGAGAGAACTACACGGCTGAAGTAGATAAGCTAGGCCAGGGGTATGGCAATTATTTGAAGCATTTTCTATGGTTAGGTGTTACGGTCATTGAGCACTGTTTCTTTCTTATGAACTACCTGGCTATTTAAAAAGTTCAATTTTGCAGGTACTCAGAAATGCATTTCATTGCAGGAATTGCAGTAATAGCCTCTTTATGTATATTGATTTTCGCAGAAAGAGAACGGGTGGTTAGTTTATAATGTAGTTTCTAGGAAATACGATTGAAATTAATATTTAAGACAGACGGCCCGGTATCTCCCCAAGACCACCATAAACCTGCAGCACAACAGAAACTAAACTTGAGATCTGGTCCGAAAAGTGTGGAAAAGTTTGCTAAGGCACTAGATACCAATAACGATGGCTTTGTTGGTCCGTTGGGTAGAAATATAATATCTTTCTAAATGAATGAATTTCAGATAAAAATGAACTTCTTGCTTGGGTATCTGAATCATATCAGAAAACAGTTGACAGAGAAGCAGTGGAGAGAATGAGTGAATTGGATGAGAATGCGGATGGATTTGTATGTTCGATTTATTCTGAAACCTATTTGGAAAATATATTGATTCGCAGGTTTCATGGGAAGAATACCTCTTAGATTCATTTCCAGAAGAAGAATTGCACAATAAGGAGGAAGAAACTCTCATCGCACAAGATAGAATGTACTTCAAGCGTTAGTACTACAAGAATCGATTTTGATTGATTTTAAATCTTCTTTTTTTCAGAAGCAGATCAAGATGATGATGGGAAATTGAATTTAGAAGAACTTGCTAGTTTTCTGAATCCTGAACATCATCCTCATATGCATTCAGTTCTGATCGCAGTGACTCTGTTAGAAAAGGATCAAAATGGAGATGGAGCAATC</canonical>
            <polymorphic>ATTTTTATCTTCAATTTGTGATAATCAGAGAAAAATTCAGGAAGAGATCTTTATTAAAAGCCATGTCTAAAAATAACCCAAGAACATTATATTTTGTCCGAGAGAACTACACGGCTGAAGTAGATAAGCTAGGCCAGGGGTATGGCAATTATTTGAAGCATTTTCTATGGTTAGGTGTTACGGTCATTGAGCACTGTTTCTTTCTTATGAACTACCTGGCTATTTAAAAAGTTCAATTTTGCAGGTACTCAGAAATGCATTTCATTGCAGGAATTGCAGTAATAGCCTCTTTATGTATATTGATTTTCGCAGAAAGAGAACGGGTGGTTAGTTTATAATGTAGTTTCTAGGAAATACGATTGAAATTAATATTTAAGACAGACGGCCCGGTATCTCCCCAAGACCACCATAAACCTGCAGCACAACAGAAACTAAACTTGAGATCTGGTCCGAAAAGTGTGGAAAAGTTTGCTAAGGCACTAGATACCAATAACGATGGYTTTGTTGGTCCGTTGGGTAGAAATATAATATCTTTCTAAATGAATGAATTTCAGATAAAAATGAACTTCTTGCTTGGGTATCTGAATCATATCAGAAAACAGTTGACAGAGAAGCAGTGGAGAGAATGAGTGAATTGGATGAGAATGCGGATGGATTTGTATGTTCGATTTATTCTGAAACCTATTTGGAAAATATATTGATTCGCAGGTTTCATGGGAAGAATACCTCTTAGATTCATTTCCAGAAGAAGAATTGCACAATAAGGAGGAAGAAACTCTCATCGCACAAGATAGAATGTACTTCAAGCGTTAGTACTACAAGAATCGATTTTGATTGATTTTAAATCTTCTTTTTTTCAGAAGCAGATCAAGATGATGATGGGAAATTGAATTTAGAAGAACTTGCTAGTTTTCTGAATCCTGAACATCATCCTCATATGCATTCAGTTCTGATCGCAGTGACTCTGTTAGAAAAGGATCAAAATGGAGATGGAGCAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>501 114 100 86 66 60 54 14 5</canonical_bands>
                <polymorphic_bands>615 100 86 66 60 54 14 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACGGGTGGTTAGTTTATAATG</pcr_primer_p1>
		<pcr_primer_p2>TTCATTTTTATCTGAAATTCATTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AACGGGTGGTTAGTTTATAATGTAGTTTCTAGGAAATACGATTGAAATTAATATTTAAGACAGACGGCCCGGTATCTCCCCAAGACCACCATAAACCTGCAGCACAACAGAAACTAAACTTGAGATCTGGTCCGAAAAGTGTGGAAAAGTTTGCTAAGGCACTAGATACCAATAACGATGGCTTTGTTGGTCCGTTGGGTAGAAATATAATATCTTTCTAAATGAATGAATTTCAGATAAAAATGAA</canonical_amplicon>
		<polymorphic_amplicon>AACGGGTGGTTAGTTTATAATGTAGTTTCTAGGAAATACGATTGAAATTAATATTTAAGACAGACGGCCCGGTATCTCCCCAAGACCACCATAAACCTGCAGCACAACAGAAACTAAACTTGAGATCTGGTCCGAAAAGTGTGGAAAAGTTTGCTAAGGCACTAGATACCAATAACGATGGYTTTGTTGGTCCGTTGGGTAGAAATATAATATCTTTCTAAATGAATGAATTTCAGATAAAAATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12476</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>164261</contig_pos>
        <strand>+</strand>
        <context>TGCACAATAA[A/G]GAGGAAGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGGAAGAATACCTCTTAGATTCATTTCCAGAAGAAGAATTGCACAATAA</left_flank>
        <right_flank>GAGGAAGAAACTCTCATCGCACAAGATAGAATGTACTTCAAGCGTTAGTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCAGGAATTGCAGTAATAGCCTCTTTATGTATATTGATTTTCGCAGAAAGAGAACGGGTGGTTAGTTTATAATGTAGTTTCTAGGAAATACGATTGAAATTAATATTTAAGACAGACGGCCCGGTATCTCCCCAAGACCACCATAAACCTGCAGCACAACAGAAACTAAACTTGAGATCTGGTCCGAAAAGTGTGGAAAAGTTTGCTAAGGCACTAGATACCAATAACGATGGCTTTGTTGGTCCGTTGGGTAGAAATATAATATCTTTCTAAATGAATGAATTTCAGATAAAAATGAACTTCTTGCTTGGGTATCTGAATCATATCAGAAAACAGTTGACAGAGAAGCAGTGGAGAGAATGAGTGAATTGGATGAGAATGCGGATGGATTTGTATGTTCGATTTATTCTGAAACCTATTTGGAAAATATATTGATTCGCAGGTTTCATGGGAAGAATACCTCTTAGATTCATTTCCAGAAGAAGAATTGCACAATAAGGAGGAAGAAACTCTCATCGCACAAGATAGAATGTACTTCAAGCGTTAGTACTACAAGAATCGATTTTGATTGATTTTAAATCTTCTTTTTTTCAGAAGCAGATCAAGATGATGATGGGAAATTGAATTTAGAAGAACTTGCTAGTTTTCTGAATCCTGAACATCATCCTCATATGCATTCAGTTCTGATCGCAGTGACTCTGTTAGAAAAGGATCAAAATGGAGATGGAGCAATCGATGAGAAAGAATTCCTTGGAGAACTAGATGATCAGAGAGGAAGTGAATGGTATAAGGTTGAAGTTGAAAGGTTAGTTCCACTTTTACATTTCTAATTGGGCCAATATTTATTTACAGACGCATCGTCGGTGCTGTAGCGAAAACAGTGAACGTTTTTTGAATAAATACATGCGCCTTCGATACCGTATCTCGAAGTTATTTCGTTTTTGCATGTTTTCCGCACAATCAGACTTTTACTCGTTTGCTCGAGATACGGTAACGAAG</canonical>
            <polymorphic>TGCAGGAATTGCAGTAATAGCCTCTTTATGTATATTGATTTTCGCAGAAAGAGAACGGGTGGTTAGTTTATAATGTAGTTTCTAGGAAATACGATTGAAATTAATATTTAAGACAGACGGCCCGGTATCTCCCCAAGACCACCATAAACCTGCAGCACAACAGAAACTAAACTTGAGATCTGGTCCGAAAAGTGTGGAAAAGTTTGCTAAGGCACTAGATACCAATAACGATGGCTTTGTTGGTCCGTTGGGTAGAAATATAATATCTTTCTAAATGAATGAATTTCAGATAAAAATGAACTTCTTGCTTGGGTATCTGAATCATATCAGAAAACAGTTGACAGAGAAGCAGTGGAGAGAATGAGTGAATTGGATGAGAATGCGGATGGATTTGTATGTTCGATTTATTCTGAAACCTATTTGGAAAATATATTGATTCGCAGGTTTCATGGGAAGAATACCTCTTAGATTCATTTCCAGAAGAAGAATTGCACAATAARGAGGAAGAAACTCTCATCGCACAAGATAGAATGTACTTCAAGCGTTAGTACTACAAGAATCGATTTTGATTGATTTTAAATCTTCTTTTTTTCAGAAGCAGATCAAGATGATGATGGGAAATTGAATTTAGAAGAACTTGCTAGTTTTCTGAATCCTGAACATCATCCTCATATGCATTCAGTTCTGATCGCAGTGACTCTGTTAGAAAAGGATCAAAATGGAGATGGAGCAATCGATGAGAAAGAATTCCTTGGAGAACTAGATGATCAGAGAGGAAGTGAATGGTATAAGGTTGAAGTTGAAAGGTTAGTTCCACTTTTACATTTCTAATTGGGCCAATATTTATTTACAGACGCATCGTCGGTGCTGTAGCGAAAACAGTGAACGTTTTTTGAATAAATACATGCGCCTTCGATACCGTATCTCGAAGTTATTTCGTTTTTGCATGTTTTCCGCACAATCAGACTTTTACTCGTTTGCTCGAGATACGGTAACGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTCGATTTATTCTGAAACCTA</pcr_primer_p1>
		<pcr_primer_p2>AACTAGCAAGTTCTTCTAAATTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTTCGATTTATTCTGAAACCTATTTGGAAAATATATTGATTCGCAGGTTTCATGGGAAGAATACCTCTTAGATTCATTTCCAGAAGAAGAATTGCACAATAAGGAGGAAGAAACTCTCATCGCACAAGATAGAATGTACTTCAAGCGTTAGTACTACAAGAATCGATTTTGATTGATTTTAAATCTTCTTTTTTTCAGAAGCAGATCAAGATGATGATGGGAAATTGAATTTAGAAGAACTTGCTAGTT</canonical_amplicon>
		<polymorphic_amplicon>TGTTCGATTTATTCTGAAACCTATTTGGAAAATATATTGATTCGCAGGTTTCATGGGAAGAATACCTCTTAGATTCATTTCCAGAAGAAGAATTGCACAATAARGAGGAAGAAACTCTCATCGCACAAGATAGAATGTACTTCAAGCGTTAGTACTACAAGAATCGATTTTGATTGATTTTAAATCTTCTTTTTTTCAGAAGCAGATCAAGATGATGATGGGAAATTGAATTTAGAAGAACTTGCTAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12477</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>166434</contig_pos>
        <strand>+</strand>
        <context>AGAGCTCTCA[A/C]GAGAACTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCA</left_flank>
        <right_flank>GAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAAACTGAATCGAGTCTATAGCCTGGGAGCGTACGAAGAAAGCGCATGCGTGCGAAGCAAGAAAGGAGCAAATGGAAGAATAGAAATTTCAGACTCGCGGACAAAGTAGGCGGCGTCTGGTAGTCATATAATCAGAAGAGGAATACATTATTTGGGTAGATAAAGGGAGGAAGAATAATGACTCAGTAACACTAGTTCGCGGATGGAAAGATATTTGGGAGGAGCATCACGTATTAAACGAAGGCAATTTAACGAAAGACGAAAAAAGCGATTTCAGAATAAAAGTTATATTGGGTCAATTATGAAAAAAAATGATTCTTTGTGTTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACCAAAAGCCTGTTCGAAAGTTCATCATTGTTACTTCTGATGAAACTGAAAGAGTGAAATGGATTGAGATTATGGGCGACAATTTTGGCAGTAAAATTGCAGGAAACGAAATGTTTACTTCTTCTGACG</canonical>
            <polymorphic>AAGAAACTGAATCGAGTCTATAGCCTGGGAGCGTACGAAGAAAGCGCATGCGTGCGAAGCAAGAAAGGAGCAAATGGAAGAATAGAAATTTCAGACTCGCGGACAAAGTAGGCGGCGTCTGGTAGTCATATAATCAGAAGAGGAATACATTATTTGGGTAGATAAAGGGAGGAAGAATAATGACTCAGTAACACTAGTTCGCGGATGGAAAGATATTTGGGAGGAGCATCACGTATTAAACGAAGGCAATTTAACGAAAGACGAAAAAAGCGATTTCAGAATAAAAGTTATATTGGGTCAATTATGAAAAAAAATGATTCTTTGTGTTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAMGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACCAAAAGCCTGTTCGAAAGTTCATCATTGTTACTTCTGATGAAACTGAAAGAGTGAAATGGATTGAGATTATGGGCGACAATTTTGGCAGTAAAATTGCAGGAAACGAAATGTTTACTTCTTCTGACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>496 316 188</canonical_bands>
                <polymorphic_bands>684 316</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTTGTGTTTTTCAAACCTA</pcr_primer_p1>
		<pcr_primer_p2>TTACTTCGAGAACATTTTGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTTGTGTTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAA</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTTGTGTTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAMGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12478</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>166398</contig_pos>
        <strand>+</strand>
        <context>TCCACCTGAA[C/T]AAAAAAATCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAA</left_flank>
        <right_flank>AAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAGAATGAAAAGAAAAGAAGAGGAAAAAAAAAGAAGAAACTGAATCGAGTCTATAGCCTGGGAGCGTACGAAGAAAGCGCATGCGTGCGAAGCAAGAAAGGAGCAAATGGAAGAATAGAAATTTCAGACTCGCGGACAAAGTAGGCGGCGTCTGGTAGTCATATAATCAGAAGAGGAATACATTATTTGGGTAGATAAAGGGAGGAAGAATAATGACTCAGTAACACTAGTTCGCGGATGGAAAGATATTTGGGAGGAGCATCACGTATTAAACGAAGGCAATTTAACGAAAGACGAAAAAAGCGATTTCAGAATAAAAGTTATATTGGGTCAATTATGAAAAAAAATGATTCTTTGTGTTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACCAAAAGCCTGTTCGAAAGTTCATCATTGTTACTTCTGATGAAACTGAAAGAGTGAAATGGATTGAGATTATGGGCGACAATTTTGGCAGTA</canonical>
            <polymorphic>AAGAAGAATGAAAAGAAAAGAAGAGGAAAAAAAAAGAAGAAACTGAATCGAGTCTATAGCCTGGGAGCGTACGAAGAAAGCGCATGCGTGCGAAGCAAGAAAGGAGCAAATGGAAGAATAGAAATTTCAGACTCGCGGACAAAGTAGGCGGCGTCTGGTAGTCATATAATCAGAAGAGGAATACATTATTTGGGTAGATAAAGGGAGGAAGAATAATGACTCAGTAACACTAGTTCGCGGATGGAAAGATATTTGGGAGGAGCATCACGTATTAAACGAAGGCAATTTAACGAAAGACGAAAAAAGCGATTTCAGAATAAAAGTTATATTGGGTCAATTATGAAAAAAAATGATTCTTTGTGTTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAAYAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACCAAAAGCCTGTTCGAAAGTTCATCATTGTTACTTCTGATGAAACTGAAAGAGTGAAATGGATTGAGATTATGGGCGACAATTTTGGCAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTTGTGTTTTTCAAACCTA</pcr_primer_p1>
		<pcr_primer_p2>TTACTTCGAGAACATTTTGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTTGTGTTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAA</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTTGTGTTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAAYAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12479</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>166342</contig_pos>
        <strand>+</strand>
        <context>CTATCKATGT[A/G]TATATATCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGT</left_flank>
        <right_flank>TATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCAC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTAACTGACGACGACAGCGAAGCAGAGAAAAGGGAAGAAGACGGGGAAGACGACGAAGAAGAATGAAAAGAAAAGAAGAGGAAAAAAAAAGAAGAAACTGAATCGAGTCTATAGCCTGGGAGCGTACGAAGAAAGCGCATGCGTGCGAAGCAAGAAAGGAGCAAATGGAAGAATAGAAATTTCAGACTCGCGGACAAAGTAGGCGGCGTCTGGTAGTCATATAATCAGAAGAGGAATACATTATTTGGGTAGATAAAGGGAGGAAGAATAATGACTCAGTAACACTAGTTCGCGGATGGAAAGATATTTGGGAGGAGCATCACGTATTAAACGAAGGCAATTTAACGAAAGACGAAAAAAGCGATTTCAGAATAAAAGTTATATTGGGTCAATTATGAAAAAAAATGATTCTTTGTGTTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACCAAAAGCCTGTTCGAAAGTTCATCATTGTTACTTC</canonical>
            <polymorphic>GGTAACTGACGACGACAGCGAAGCAGAGAAAAGGGAAGAAGACGGGGAAGACGACGAAGAAGAATGAAAAGAAAAGAAGAGGAAAAAAAAAGAAGAAACTGAATCGAGTCTATAGCCTGGGAGCGTACGAAGAAAGCGCATGCGTGCGAAGCAAGAAAGGAGCAAATGGAAGAATAGAAATTTCAGACTCGCGGACAAAGTAGGCGGCGTCTGGTAGTCATATAATCAGAAGAGGAATACATTATTTGGGTAGATAAAGGGAGGAAGAATAATGACTCAGTAACACTAGTTCGCGGATGGAAAGATATTTGGGAGGAGCATCACGTATTAAACGAAGGCAATTTAACGAAAGACGAAAAAAGCGATTTCAGAATAAAAGTTATATTGGGTCAATTATGAAAAAAAATGATTCTTTGTGTTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTRTATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACCAAAAGCCTGTTCGAAAGTTCATCATTGTTACTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTTGTGTTTTTCAAACCTA</pcr_primer_p1>
		<pcr_primer_p2>TTACTTCGAGAACATTTTGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTTGTGTTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAA</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTTGTGTTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTRTATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12480</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>166337</contig_pos>
        <strand>+</strand>
        <context>TGACCCTATC[G/T]ATGTRTATAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATC</left_flank>
        <right_flank>ATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGAT</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAAGGGTAACTGACGACGACAGCGAAGCAGAGAAAAGGGAAGAAGACGGGGAAGACGACGAAGAAGAATGAAAAGAAAAGAAGAGGAAAAAAAAAGAAGAAACTGAATCGAGTCTATAGCCTGGGAGCGTACGAAGAAAGCGCATGCGTGCGAAGCAAGAAAGGAGCAAATGGAAGAATAGAAATTTCAGACTCGCGGACAAAGTAGGCGGCGTCTGGTAGTCATATAATCAGAAGAGGAATACATTATTTGGGTAGATAAAGGGAGGAAGAATAATGACTCAGTAACACTAGTTCGCGGATGGAAAGATATTTGGGAGGAGCATCACGTATTAAACGAAGGCAATTTAACGAAAGACGAAAAAAGCGATTTCAGAATAAAAGTTATATTGGGTCAATTATGAAAAAAAATGATTCTTTGTGTTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACCAAAAGCCTGTTCGAAAGTTCATCATTGTT</canonical>
            <polymorphic>GGAAGGGTAACTGACGACGACAGCGAAGCAGAGAAAAGGGAAGAAGACGGGGAAGACGACGAAGAAGAATGAAAAGAAAAGAAGAGGAAAAAAAAAGAAGAAACTGAATCGAGTCTATAGCCTGGGAGCGTACGAAGAAAGCGCATGCGTGCGAAGCAAGAAAGGAGCAAATGGAAGAATAGAAATTTCAGACTCGCGGACAAAGTAGGCGGCGTCTGGTAGTCATATAATCAGAAGAGGAATACATTATTTGGGTAGATAAAGGGAGGAAGAATAATGACTCAGTAACACTAGTTCGCGGATGGAAAGATATTTGGGAGGAGCATCACGTATTAAACGAAGGCAATTTAACGAAAGACGAAAAAAGCGATTTCAGAATAAAAGTTATATTGGGTCAATTATGAAAAAAAATGATTCTTTGTGTTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCKATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACCAAAAGCCTGTTCGAAAGTTCATCATTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>389 171 162 110 101 50 17</canonical_bands>
                <polymorphic_bands>551 171 110 101 50 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTTGTGTTTTTCAAACCTA</pcr_primer_p1>
		<pcr_primer_p2>TTACTTCGAGAACATTTTGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTTGTGTTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAA</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTTGTGTTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCKATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12481</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>199127</contig_pos>
        <strand>+</strand>
        <context>CGCAAAAGAA[A/C]GTGAGGGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGGGAGTGAGAGACGACTAAGTACAACATAGTATTCCCCGCGCAAAAGAA</left_flank>
        <right_flank>GTGAGGGAAAGTCGGAGGAGCCGGGAGCCAATGAGAGACGAAATGTGACA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGCGTCGTCGATTAATAAAGTAGGACTTTGTGGTGGTTTCTTTCTGCTTCTATGCATGTAAACACGGTGAGTTTTTCACTACCGAATGCGAAACAGTCTGCGACGTTTGAAAGTACAACGGAAAAAAAAATCTGATTCATTTTTTTTACTATATATTCTTCATAAAATTTACTAAACATTTATGGAACAGAAAAAAAAAGTTATGGACTAGAATTCGAGAAAAAATTCCAAAGTTGAAGCAGCGGTAGTGAAAAATTTACCGTGATGTAAAATATTAATTGTTCGGTTGAGCGGTGGAAGTCAATGAGCAAAGTCGGAAAAAATAACTACAGAGGTAGTTTAGCGAGTCGACTAATTTTTCGGTCCAAAATATTGATTTCACGATTTCGGCCACCTTATCCAAATATTTGCATAAGACTTGACTCATTGGCTCGGCGAACAAGGAAATGGGAGTGAGAGACGACTAAGTACAACATAGTATTCCCCGCGCAAAAGAACGTGAGGGAAAGTCGGAGGAGCCGGGAGCCAATGAGAGACGAAATGTGACATATTTCGGACGAAAGCAAAAGACAGAAAAAGAAGACGTCTGTCAGGAGGCGACGGAAAACAAAATATATGGACTAGCCAACAACGAAACGACTTCTAGCTTCTAACGAAATATAGTTGGCCAAAAGAAACGTTTTAGTGCTCTGCTAACTGGCCATCACAGGAAACATGTTTTAGGGTGGTTCCTTTGTAATGGGACAACATGCTTTTAAGATATACCAGAAGAATATATCAGAAAAATCCCAGTTGTATTTTAGAGAGAAAAGCGAAGAAGAATGAATGTTTAGTAAAAGTGGCTTCGTCGTTCTCTTTTTCTCTGATACTCGCTTTTTGTCACATATCATAAAAATCATGGTTTCCTCGGTTTGTTTGCGTTTCATTTTGGCTCCTCTCTTTTGGAAATGTTTCTTTCACCCTTTCCTCAGCTTCTCCGTTGAAATTTTTGCGAAAAC</canonical>
            <polymorphic>CCAGCGTCGTCGATTAATAAAGTAGGACTTTGTGGTGGTTTCTTTCTGCTTCTATGCATGTAAACACGGTGAGTTTTTCACTACCGAATGCGAAACAGTCTGCGACGTTTGAAAGTACAACGGAAAAAAAAATCTGATTCATTTTTTTTACTATATATTCTTCATAAAATTTACTAAACATTTATGGAACAGAAAAAAAAAGTTATGGACTAGAATTCGAGAAAAAATTCCAAAGTTGAAGCAGCGGTAGTGAAAAATTTACCGTGATGTAAAATATTAATTGTTCGGTTGAGCGGTGGAAGTCAATGAGCAAAGTCGGAAAAAATAACTACAGAGGTAGTTTAGCGAGTCGACTAATTTTTCGGTCCAAAATATTGATTTCACGATTTCGGCCACCTTATCCAAATATTTGCATAAGACTTGACTCATTGGCTCGGCGAACAAGGAAATGGGAGTGAGAGACGACTAAGTACAACATAGTATTCCCCGCGCAAAAGAAMGTGAGGGAAAGTCGGAGGAGCCGGGAGCCAATGAGAGACGAAATGTGACATATTTCGGACGAAAGCAAAAGACAGAAAAAGAAGACGTCTGTCAGGAGGCGACGGAAAACAAAATATATGGACTAGCCAACAACGAAACGACTTCTAGCTTCTAACGAAATATAGTTGGCCAAAAGAAACGTTTTAGTGCTCTGCTAACTGGCCATCACAGGAAACATGTTTTAGGGTGGTTCCTTTGTAATGGGACAACATGCTTTTAAGATATACCAGAAGAATATATCAGAAAAATCCCAGTTGTATTTTAGAGAGAAAAGCGAAGAAGAATGAATGTTTAGTAAAAGTGGCTTCGTCGTTCTCTTTTTCTCTGATACTCGCTTTTTGTCACATATCATAAAAATCATGGTTTCCTCGGTTTGTTTGCGTTTCATTTTGGCTCCTCTCTTTTGGAAATGTTTCTTTCACCCTTTCCTCAGCTTCTCCGTTGAAATTTTTGCGAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>394 321 105 94 86</canonical_bands>
                <polymorphic_bands>480 321 105 94</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGCATAAGACTTGACTCATTG</pcr_primer_p1>
		<pcr_primer_p2>TTCGTTAGAAGCTAGAAGTCGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGCATAAGACTTGACTCATTGGCTCGGCGAACAAGGAAATGGGAGTGAGAGACGACTAAGTACAACATAGTATTCCCCGCGCAAAAGAACGTGAGGGAAAGTCGGAGGAGCCGGGAGCCAATGAGAGACGAAATGTGACATATTTCGGACGAAAGCAAAAGACAGAAAAAGAAGACGTCTGTCAGGAGGCGACGGAAAACAAAATATATGGACTAGCCAACAACGAAACGACTTCTAGCTTCTAACGAA</canonical_amplicon>
		<polymorphic_amplicon>TTGCATAAGACTTGACTCATTGGCTCGGCGAACAAGGAAATGGGAGTGAGAGACGACTAAGTACAACATAGTATTCCCCGCGCAAAAGAAMGTGAGGGAAAGTCGGAGGAGCCGGGAGCCAATGAGAGACGAAATGTGACATATTTCGGACGAAAGCAAAAGACAGAAAAAGAAGACGTCTGTCAGGAGGCGACGGAAAACAAAATATATGGACTAGCCAACAACGAAACGACTTCTAGCTTCTAACGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12482</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>223637</contig_pos>
        <strand></strand>
        <context>GAGACTAGAA[C/A]CTCTATAATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AATAGAGGTGGGCTTCTATTAGAGGAAATACGGTAATATGGAGACTAGAA</left_flank>
        <right_flank>CTCTATAATCAAAAGATCACAAGAAATTCGATACTGAAATTTGGAAATTT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGCTCAACTTGTGGGTTCAAAAAGGGTGGAGCAAAGAGAGAAAAACGTCCCGGGGGTACGATTTCAGAGAATGAAAGAACACTGTTTATGTGCATGCACTTACGGATATTGAACTGGATTTTATTTATAAATCAGATTAGAGAACTGAAAAGTTAGATTTAAATTGTCTGAAAATTGAGAAATATATGTTTTTTTACTTTTCTAAAATTACCGTATTTCCTCTAATAGAAGCCCATGGCTTCTATTTTTCAACCTACCTCTGGGGTGGACTAATTTTGAAGAAAACGCTCAAATTAGAATGTTTTCGGCTTTCAACTGAACTGGAATAGTTTTCACACGACAAGAATTAGCAGAAAGGACCAGAAAACCAAAAAAAAAAGAGTATGGATAACCTAACCGGAAAGAAACATGAACAGCCAGGGTGGACTTCTATTAGAGGTGGGCTTCAAATAGAGGTGGGCTTCTATTAGAGGAAATACGGTAATATGGAGACTAGAACCTCTATAATCAAAAGATCACAAGAAATTCGATACTGAAATTTGGAAATTTCTGCAAAATTTGGACCATTTTGGTGATTCTGAATTTATAGTTGTCATCTGTTTTTGACAGCTTTTGAGTCTTCTGAACAATTATTGAATTTGTTATCTTAGTTTTCGGGAAAAAATTGTTGATTTTCAACTCTAGTAGTTGAGAACCTTTTGAAGCAGTTGTTGTGCTAAAAATTCGTTTTTTTTTCGTTTTAAGAAAAAAGTTTTTATTTCTAAATTCAAAAGTTTTAAATTGGAACCTTTTCCATAACTTCAAACTAAAAAAAATATTTTTGTATTAGAAAAAATGAGTCATCAGTTATGTTTTTGGCACCTCTTCATATTATGAATTAAGAATAAAACTTTTCTAGCAGGCTGCAACACATTTTCATAATTAAATTACTTTTCAGTCTTATTAAATGTATATGTTTACTGTCTTGTAATTCCTTAACGTTGTCCAAATATTGAATCT</canonical>
            <polymorphic>AGGCTCAACTTGTGGGTTCAAAAAGGGTGGAGCAAAGAGAGAAAAACGTCCCGGGGGTACGATTTCAGAGAATGAAAGAACACTGTTTATGTGCATGCACTTACGGATATTGAACTGGATTTTATTTATAAATCAGATTAGAGAACTGAAAAGTTAGATTTAAATTGTCTGAAAATTGAGAAATATATGTTTTTTTACTTTTCTAAAATTACCGTATTTCCTCTAATAGAAGCCCATGGCTTCTATTTTTCAACCTACCTCTGGGGTGGACTAATTTTGAAGAAAACGCTCAAATTAGAATGTTTTCGGCTTTCAACTGAACTGGAATAGTTTTCACACGACAAGAATTAGCAGAAAGGACCAGAAAACCAAAAAAAAAAGAGTATGGATAACCTAACCGGAAAGAAACATGAACAGCCAGGGTGGACTTCTATTAGAGGTGGGCTTCAAATAGAGGTGGGCTTCTATTAGAGGAAATACGGTAATATGGAGACTAGAAMCTCTATAATCAAAAGATCACAAGAAATTCGATACTGAAATTTGGAAATTTCTGCAAAATTTGGACCATTTTGGTGATTCTGAATTTATAGTTGTCATCTGTTTTTGACAGCTTTTGAGTCTTCTGAACAATTATTGAATTTGTTATCTTAGTTTTCGGGAAAAAATTGTTGATTTTCAACTCTAGTAGTTGAGAACCTTTTGAAGCAGTTGTTGTGCTAAAAATTCGTTTTTTTTTCGTTTTAAGAAAAAAGTTTTTATTTCTAAATTCAAAAGTTTTAAATTGGAACCTTTTCCATAACTTCAAACTAAAAAAAATATTTTTGTATTAGAAAAAATGAGTCATCAGTTATGTTTTTGGCACCTCTTCATATTATGAATTAAGAATAAAACTTTTCTAGCAGGCTGCAACACATTTTCATAATTAAATTACTTTTCAGTCTTATTAAATGTATATGTTTACTGTCTTGTAATTCCTTAACGTTGTCCAAATATTGAATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGATTAGAGAACTGAAAAGTTAGA</pcr_primer_p1>
		<pcr_primer_p2>ATAAATTCAGAATCACCAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>456</pcr_amplicon_size>
		<canonical_amplicon>TCAGATTAGAGAACTGAAAAGTTAGATTTAAATTGTCTGAAAATTGAGAAATATATGTTTTTTTACTTTTCTAAAATTACCGTATTTCCTCTAATAGAAGCCCATGGCTTCTATTTTTCAACCTACCTCTGGGGTGGACTAATTTTGAAGAAAACGCTCAAATTAGAATGTTTTCGGCTTTCAACTGAACTGGAATAGTTTTCACACGACAAGAATTAGCAGAAAGGACCAGAAAACCAAAAAAAAAAGAGTATGGATAACCTAACCGGAAAGAAACATGAACAGCCAGGGTGGACTTCTATTAGAGGTGGGCTTCAAATAGAGGTGGGCTTCTATTAGAGGAAATACGGTAATATGGAGACTAGAACCTCTATAATCAAAAGATCACAAGAAATTCGATACTGAAATTTGGAAATTTCTGCAAAATTTGGACCATTTTGGTGATTCTGAATTTAT</canonical_amplicon>
		<polymorphic_amplicon>TCAGATTAGAGAACTGAAAAGTTAGATTTAAATTGTCTGAAAATTGAGAAATATATGTTTTTTTACTTTTCTAAAATTACCGTATTTCCTCTAATAGAAGCCCATGGCTTCTATTTTTCAACCTACCTCTGGGGTGGACTAATTTTGAAGAAAACGCTCAAATTAGAATGTTTTCGGCTTTCAACTGAACTGGAATAGTTTTCACACGACAAGAATTAGCAGAAAGGACCAGAAAACCAAAAAAAAAAGAGTATGGATAACCTAACCGGAAAGAAACATGAACAGCCAGGGTGGACTTCTATTAGAGGTGGGCTTCAAATAGAGGTGGGCTTCTATTAGAGGAAATACGGTAATATGGAGACTAGAAMCTCTATAATCAAAAGATCACAAGAAATTCGATACTGAAATTTGGAAATTTCTGCAAAATTTGGACCATTTTGGTGATTCTGAATTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12483</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>223648</contig_pos>
        <strand>+</strand>
        <context>CTCTATAATC[A/C]AAAGATCACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCTTCTATTAGAGGAAATACGGTAATATGGAGACTAGAACCTCTATAATC</left_flank>
        <right_flank>AAAGATCACAAGAAATTCGATACTGAAATTTGGAAATTTCTGCAAAATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGGTTCAAAAAGGGTGGAGCAAAGAGAGAAAAACGTCCCGGGGGTACGATTTCAGAGAATGAAAGAACACTGTTTATGTGCATGCACTTACGGATATTGAACTGGATTTTATTTATAAATCAGATTAGAGAACTGAAAAGTTAGATTTAAATTGTCTGAAAATTGAGAAATATATGTTTTTTTACTTTTCTAAAATTACCGTATTTCCTCTAATAGAAGCCCATGGCTTCTATTTTTCAACCTACCTCTGGGGTGGACTAATTTTGAAGAAAACGCTCAAATTAGAATGTTTTCGGCTTTCAACTGAACTGGAATAGTTTTCACACGACAAGAATTAGCAGAAAGGACCAGAAAACCAAAAAAAAAAGAGTATGGATAACCTAACCGGAAAGAAACATGAACAGCCAGGGTGGACTTCTATTAGAGGTGGGCTTCAAATAGAGGTGGGCTTCTATTAGAGGAAATACGGTAATATGGAGACTAGAACCTCTATAATCAAAAGATCACAAGAAATTCGATACTGAAATTTGGAAATTTCTGCAAAATTTGGACCATTTTGGTGATTCTGAATTTATAGTTGTCATCTGTTTTTGACAGCTTTTGAGTCTTCTGAACAATTATTGAATTTGTTATCTTAGTTTTCGGGAAAAAATTGTTGATTTTCAACTCTAGTAGTTGAGAACCTTTTGAAGCAGTTGTTGTGCTAAAAATTCGTTTTTTTTTCGTTTTAAGAAAAAAGTTTTTATTTCTAAATTCAAAAGTTTTAAATTGGAACCTTTTCCATAACTTCAAACTAAAAAAAATATTTTTGTATTAGAAAAAATGAGTCATCAGTTATGTTTTTGGCACCTCTTCATATTATGAATTAAGAATAAAACTTTTCTAGCAGGCTGCAACACATTTTCATAATTAAATTACTTTTCAGTCTTATTAAATGTATATGTTTACTGTCTTGTAATTCCTTAACGTTGTCCAAATATTGAATCTGATAATCTAAT</canonical>
            <polymorphic>GTGGGTTCAAAAAGGGTGGAGCAAAGAGAGAAAAACGTCCCGGGGGTACGATTTCAGAGAATGAAAGAACACTGTTTATGTGCATGCACTTACGGATATTGAACTGGATTTTATTTATAAATCAGATTAGAGAACTGAAAAGTTAGATTTAAATTGTCTGAAAATTGAGAAATATATGTTTTTTTACTTTTCTAAAATTACCGTATTTCCTCTAATAGAAGCCCATGGCTTCTATTTTTCAACCTACCTCTGGGGTGGACTAATTTTGAAGAAAACGCTCAAATTAGAATGTTTTCGGCTTTCAACTGAACTGGAATAGTTTTCACACGACAAGAATTAGCAGAAAGGACCAGAAAACCAAAAAAAAAAGAGTATGGATAACCTAACCGGAAAGAAACATGAACAGCCAGGGTGGACTTCTATTAGAGGTGGGCTTCAAATAGAGGTGGGCTTCTATTAGAGGAAATACGGTAATATGGAGACTAGAACCTCTATAATCMAAAGATCACAAGAAATTCGATACTGAAATTTGGAAATTTCTGCAAAATTTGGACCATTTTGGTGATTCTGAATTTATAGTTGTCATCTGTTTTTGACAGCTTTTGAGTCTTCTGAACAATTATTGAATTTGTTATCTTAGTTTTCGGGAAAAAATTGTTGATTTTCAACTCTAGTAGTTGAGAACCTTTTGAAGCAGTTGTTGTGCTAAAAATTCGTTTTTTTTTCGTTTTAAGAAAAAAGTTTTTATTTCTAAATTCAAAAGTTTTAAATTGGAACCTTTTCCATAACTTCAAACTAAAAAAAATATTTTTGTATTAGAAAAAATGAGTCATCAGTTATGTTTTTGGCACCTCTTCATATTATGAATTAAGAATAAAACTTTTCTAGCAGGCTGCAACACATTTTCATAATTAAATTACTTTTCAGTCTTATTAAATGTATATGTTTACTGTCTTGTAATTCCTTAACGTTGTCCAAATATTGAATCTGATAATCTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGATTAGAGAACTGAAAAGTTAGA</pcr_primer_p1>
		<pcr_primer_p2>ATAAATTCAGAATCACCAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>456</pcr_amplicon_size>
		<canonical_amplicon>TCAGATTAGAGAACTGAAAAGTTAGATTTAAATTGTCTGAAAATTGAGAAATATATGTTTTTTTACTTTTCTAAAATTACCGTATTTCCTCTAATAGAAGCCCATGGCTTCTATTTTTCAACCTACCTCTGGGGTGGACTAATTTTGAAGAAAACGCTCAAATTAGAATGTTTTCGGCTTTCAACTGAACTGGAATAGTTTTCACACGACAAGAATTAGCAGAAAGGACCAGAAAACCAAAAAAAAAAGAGTATGGATAACCTAACCGGAAAGAAACATGAACAGCCAGGGTGGACTTCTATTAGAGGTGGGCTTCAAATAGAGGTGGGCTTCTATTAGAGGAAATACGGTAATATGGAGACTAGAACCTCTATAATCAAAAGATCACAAGAAATTCGATACTGAAATTTGGAAATTTCTGCAAAATTTGGACCATTTTGGTGATTCTGAATTTAT</canonical_amplicon>
		<polymorphic_amplicon>TCAGATTAGAGAACTGAAAAGTTAGATTTAAATTGTCTGAAAATTGAGAAATATATGTTTTTTTACTTTTCTAAAATTACCGTATTTCCTCTAATAGAAGCCCATGGCTTCTATTTTTCAACCTACCTCTGGGGTGGACTAATTTTGAAGAAAACGCTCAAATTAGAATGTTTTCGGCTTTCAACTGAACTGGAATAGTTTTCACACGACAAGAATTAGCAGAAAGGACCAGAAAACCAAAAAAAAAAGAGTATGGATAACCTAACCGGAAAGAAACATGAACAGCCAGGGTGGACTTCTATTAGAGGTGGGCTTCAAATAGAGGTGGGCTTCTATTAGAGGAAATACGGTAATATGGAGACTAGAACCTCTATAATCMAAAGATCACAAGAAATTCGATACTGAAATTTGGAAATTTCTGCAAAATTTGGACCATTTTGGTGATTCTGAATTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12484</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>234508</contig_pos>
        <strand>+</strand>
        <context>TGAAAACTAA[A/C]ATCTTATCGG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACATCTAGACAGTTTTTAACGATGTAATGAGTCATTCATCTGAAAACTAA</left_flank>
        <right_flank>ATCTTATCGGTAGAAAAAAACGCGAATGAAAATCGAATGACGAATAAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTAAGAGTGAGAAACTGGATAAAAAGTACAATTTAAAATACGAAAAAGTTTACTCAAAAGTGCATACTTTGCTATAATATTGAAAAAATACCTTAACGACTTTTGATCTTCAGAATTCCTTAAAAACTTGATTCCTTCTTGTTATAAACATGGCTCTTTTCAGAAACTAATGAGTGCCTGGCCTAGAAAAGAGTAATATCAGGAAAAGAAAAAGAAAATCGTCAATAATCAGAAGTCACGTTTTCACCTTCTTCGCATTCTGAATATTCAGCACTTCTCCATTCGAAAGCAGGTGGATTCATCAAGAAGTTTTGTCTATTTTCCAACTTCCGATTTATAGTAATCTACTGTAGAAGACAATTCCTTTTGAAATAAAATACCGGTATTTCAATATGATTTTTTAGAGCTCATTCAGAATTATCATCTTTGAAAAAAAAAAGCAAAATCAACATCTAGACAGTTTTTAACGATGTAATGAGTCATTCATCTGAAAACTAACATCTTATCGGTAGAAAAAAACGCGAATGAAAATCGAATGACGAATAAAAATTGTTGAAAAGGGACTGAAATATATGAAATTAAATTTCACCTGCTCTTTAAAAAATCAGGTTTGAATACAAAACCAAAGGTTTGAAATGTCGAATCCCAGACAAGTTGAAGTTGGAATTTCTGACAAGGAAAAGTATTGCATAACAACAGAAAACAGGGAAGACAGAGTTCAAGAAAATTAGAAGCTGAATCAGAAGAAAAACACTGTCTTTCAGGCTTTTTCCAAATTAAAAGTTGATGAAATTTCAGTCAATCTACATCTAGGTACCGTAACCATCTGCAATGTTTCTTAGTGTGCACAAGGTGTTATTCTGGTACGAAAAAGGAGCTCGAATCTGTGGATTAGAAACGCCAGTGGCCGTGGGCGAAGGTCCCACAACGACAGTTACAGTACCCAAAAACTTCTTTTGTTTTCCGGATTTTTTCCCCTGTTTTTTTACTGCTTATTGT</canonical>
            <polymorphic>GTTAAGAGTGAGAAACTGGATAAAAAGTACAATTTAAAATACGAAAAAGTTTACTCAAAAGTGCATACTTTGCTATAATATTGAAAAAATACCTTAACGACTTTTGATCTTCAGAATTCCTTAAAAACTTGATTCCTTCTTGTTATAAACATGGCTCTTTTCAGAAACTAATGAGTGCCTGGCCTAGAAAAGAGTAATATCAGGAAAAGAAAAAGAAAATCGTCAATAATCAGAAGTCACGTTTTCACCTTCTTCGCATTCTGAATATTCAGCACTTCTCCATTCGAAAGCAGGTGGATTCATCAAGAAGTTTTGTCTATTTTCCAACTTCCGATTTATAGTAATCTACTGTAGAAGACAATTCCTTTTGAAATAAAATACCGGTATTTCAATATGATTTTTTAGAGCTCATTCAGAATTATCATCTTTGAAAAAAAAAAGCAAAATCAACATCTAGACAGTTTTTAACGATGTAATGAGTCATTCATCTGAAAACTAAMATCTTATCGGTAGAAAAAAACGCGAATGAAAATCGAATGACGAATAAAAATTGTTGAAAAGGGACTGAAATATATGAAATTAAATTTCACCTGCTCTTTAAAAAATCAGGTTTGAATACAAAACCAAAGGTTTGAAATGTCGAATCCCAGACAAGTTGAAGTTGGAATTTCTGACAAGGAAAAGTATTGCATAACAACAGAAAACAGGGAAGACAGAGTTCAAGAAAATTAGAAGCTGAATCAGAAGAAAAACACTGTCTTTCAGGCTTTTTCCAAATTAAAAGTTGATGAAATTTCAGTCAATCTACATCTAGGTACCGTAACCATCTGCAATGTTTCTTAGTGTGCACAAGGTGTTATTCTGGTACGAAAAAGGAGCTCGAATCTGTGGATTAGAAACGCCAGTGGCCGTGGGCGAAGGTCCCACAACGACAGTTACAGTACCCAAAAACTTCTTTTGTTTTCCGGATTTTTTCCCCTGTTTTTTTACTGCTTATTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTTTCCAACTTCCGATTTAT</pcr_primer_p1>
		<pcr_primer_p2>AGTCCCTTTTCAACAATTTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATTTTCCAACTTCCGATTTATAGTAATCTACTGTAGAAGACAATTCCTTTTGAAATAAAATACCGGTATTTCAATATGATTTTTTAGAGCTCATTCAGAATTATCATCTTTGAAAAAAAAAAGCAAAATCAACATCTAGACAGTTTTTAACGATGTAATGAGTCATTCATCTGAAAACTAACATCTTATCGGTAGAAAAAAACGCGAATGAAAATCGAATGACGAATAAAAATTGTTGAAAAGGGACT</canonical_amplicon>
		<polymorphic_amplicon>CTATTTTCCAACTTCCGATTTATAGTAATCTACTGTAGAAGACAATTCCTTTTGAAATAAAATACCGGTATTTCAATATGATTTTTTAGAGCTCATTCAGAATTATCATCTTTGAAAAAAAAAAGCAAAATCAACATCTAGACAGTTTTTAACGATGTAATGAGTCATTCATCTGAAAACTAAMATCTTATCGGTAGAAAAAAACGCGAATGAAAATCGAATGACGAATAAAAATTGTTGAAAAGGGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12485</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>234530</contig_pos>
        <strand></strand>
        <context>AGAAAAAAAC[G/A]CGAATGAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGTAATGAGTCATTCATCTGAAAACTAACATCTTATCGGTAGAAAAAAAC</left_flank>
        <right_flank>CGAATGAAAATCGAATGACGAATAAAAATTGTTGAAAAGGGACTGAAATA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAGTACAATTTAAAATACGAAAAAGTTTACTCAAAAGTGCATACTTTGCTATAATATTGAAAAAATACCTTAACGACTTTTGATCTTCAGAATTCCTTAAAAACTTGATTCCTTCTTGTTATAAACATGGCTCTTTTCAGAAACTAATGAGTGCCTGGCCTAGAAAAGAGTAATATCAGGAAAAGAAAAAGAAAATCGTCAATAATCAGAAGTCACGTTTTCACCTTCTTCGCATTCTGAATATTCAGCACTTCTCCATTCGAAAGCAGGTGGATTCATCAAGAAGTTTTGTCTATTTTCCAACTTCCGATTTATAGTAATCTACTGTAGAAGACAATTCCTTTTGAAATAAAATACCGGTATTTCAATATGATTTTTTAGAGCTCATTCAGAATTATCATCTTTGAAAAAAAAAAGCAAAATCAACATCTAGACAGTTTTTAACGATGTAATGAGTCATTCATCTGAAAACTAACATCTTATCGGTAGAAAAAAACGCGAATGAAAATCGAATGACGAATAAAAATTGTTGAAAAGGGACTGAAATATATGAAATTAAATTTCACCTGCTCTTTAAAAAATCAGGTTTGAATACAAAACCAAAGGTTTGAAATGTCGAATCCCAGACAAGTTGAAGTTGGAATTTCTGACAAGGAAAAGTATTGCATAACAACAGAAAACAGGGAAGACAGAGTTCAAGAAAATTAGAAGCTGAATCAGAAGAAAAACACTGTCTTTCAGGCTTTTTCCAAATTAAAAGTTGATGAAATTTCAGTCAATCTACATCTAGGTACCGTAACCATCTGCAATGTTTCTTAGTGTGCACAAGGTGTTATTCTGGTACGAAAAAGGAGCTCGAATCTGTGGATTAGAAACGCCAGTGGCCGTGGGCGAAGGTCCCACAACGACAGTTACAGTACCCAAAAACTTCTTTTGTTTTCCGGATTTTTTCCCCTGTTTTTTTACTGCTTATTGTCAAGTTTTGTTCCCGAACAAGC</canonical>
            <polymorphic>AAAAGTACAATTTAAAATACGAAAAAGTTTACTCAAAAGTGCATACTTTGCTATAATATTGAAAAAATACCTTAACGACTTTTGATCTTCAGAATTCCTTAAAAACTTGATTCCTTCTTGTTATAAACATGGCTCTTTTCAGAAACTAATGAGTGCCTGGCCTAGAAAAGAGTAATATCAGGAAAAGAAAAAGAAAATCGTCAATAATCAGAAGTCACGTTTTCACCTTCTTCGCATTCTGAATATTCAGCACTTCTCCATTCGAAAGCAGGTGGATTCATCAAGAAGTTTTGTCTATTTTCCAACTTCCGATTTATAGTAATCTACTGTAGAAGACAATTCCTTTTGAAATAAAATACCGGTATTTCAATATGATTTTTTAGAGCTCATTCAGAATTATCATCTTTGAAAAAAAAAAGCAAAATCAACATCTAGACAGTTTTTAACGATGTAATGAGTCATTCATCTGAAAACTAACATCTTATCGGTAGAAAAAAACRCGAATGAAAATCGAATGACGAATAAAAATTGTTGAAAAGGGACTGAAATATATGAAATTAAATTTCACCTGCTCTTTAAAAAATCAGGTTTGAATACAAAACCAAAGGTTTGAAATGTCGAATCCCAGACAAGTTGAAGTTGGAATTTCTGACAAGGAAAAGTATTGCATAACAACAGAAAACAGGGAAGACAGAGTTCAAGAAAATTAGAAGCTGAATCAGAAGAAAAACACTGTCTTTCAGGCTTTTTCCAAATTAAAAGTTGATGAAATTTCAGTCAATCTACATCTAGGTACCGTAACCATCTGCAATGTTTCTTAGTGTGCACAAGGTGTTATTCTGGTACGAAAAAGGAGCTCGAATCTGTGGATTAGAAACGCCAGTGGCCGTGGGCGAAGGTCCCACAACGACAGTTACAGTACCCAAAAACTTCTTTTGTTTTCCGGATTTTTTCCCCTGTTTTTTTACTGCTTATTGTCAAGTTTTGTTCCCGAACAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAACATCTAGACAGTTTTTAACG</pcr_primer_p1>
		<pcr_primer_p2>TGTTATGCAATACTTTTCCTTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAACATCTAGACAGTTTTTAACGATGTAATGAGTCATTCATCTGAAAACTAACATCTTATCGGTAGAAAAAAACGCGAATGAAAATCGAATGACGAATAAAAATTGTTGAAAAGGGACTGAAATATATGAAATTAAATTTCACCTGCTCTTTAAAAAATCAGGTTTGAATACAAAACCAAAGGTTTGAAATGTCGAATCCCAGACAAGTTGAAGTTGGAATTTCTGACAAGGAAAAGTATTGCATAACA</canonical_amplicon>
		<polymorphic_amplicon>TCAACATCTAGACAGTTTTTAACGATGTAATGAGTCATTCATCTGAAAACTAACATCTTATCGGTAGAAAAAAACRCGAATGAAAATCGAATGACGAATAAAAATTGTTGAAAAGGGACTGAAATATATGAAATTAAATTTCACCTGCTCTTTAAAAAATCAGGTTTGAATACAAAACCAAAGGTTTGAAATGTCGAATCCCAGACAAGTTGAAGTTGGAATTTCTGACAAGGAAAAGTATTGCATAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12486</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>234633</contig_pos>
        <strand>+</strand>
        <context>AATACAAAAC[C/T]AAAGGTTTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAATTAAATTTCACCTGCTCTTTAAAAAATCAGGTTTGAATACAAAAC</left_flank>
        <right_flank>AAAGGTTTGAAATGTCGAATCCCAGACAAGTTGAAGTTGGAATTTCTGAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTTGATTCCTTCTTGTTATAAACATGGCTCTTTTCAGAAACTAATGAGTGCCTGGCCTAGAAAAGAGTAATATCAGGAAAAGAAAAAGAAAATCGTCAATAATCAGAAGTCACGTTTTCACCTTCTTCGCATTCTGAATATTCAGCACTTCTCCATTCGAAAGCAGGTGGATTCATCAAGAAGTTTTGTCTATTTTCCAACTTCCGATTTATAGTAATCTACTGTAGAAGACAATTCCTTTTGAAATAAAATACCGGTATTTCAATATGATTTTTTAGAGCTCATTCAGAATTATCATCTTTGAAAAAAAAAAGCAAAATCAACATCTAGACAGTTTTTAACGATGTAATGAGTCATTCATCTGAAAACTAACATCTTATCGGTAGAAAAAAACGCGAATGAAAATCGAATGACGAATAAAAATTGTTGAAAAGGGACTGAAATATATGAAATTAAATTTCACCTGCTCTTTAAAAAATCAGGTTTGAATACAAAACCAAAGGTTTGAAATGTCGAATCCCAGACAAGTTGAAGTTGGAATTTCTGACAAGGAAAAGTATTGCATAACAACAGAAAACAGGGAAGACAGAGTTCAAGAAAATTAGAAGCTGAATCAGAAGAAAAACACTGTCTTTCAGGCTTTTTCCAAATTAAAAGTTGATGAAATTTCAGTCAATCTACATCTAGGTACCGTAACCATCTGCAATGTTTCTTAGTGTGCACAAGGTGTTATTCTGGTACGAAAAAGGAGCTCGAATCTGTGGATTAGAAACGCCAGTGGCCGTGGGCGAAGGTCCCACAACGACAGTTACAGTACCCAAAAACTTCTTTTGTTTTCCGGATTTTTTCCCCTGTTTTTTTACTGCTTATTGTCAAGTTTTGTTCCCGAACAAGCCGGAAAATAATTTTTTTGATATTGGGAAAATCGATTGAACACTTACGGAAATCGGGATAATGAATCCGGAAAAAACAGTATTTTTAGGTTACGGTAGTTGTCA</canonical>
            <polymorphic>AACTTGATTCCTTCTTGTTATAAACATGGCTCTTTTCAGAAACTAATGAGTGCCTGGCCTAGAAAAGAGTAATATCAGGAAAAGAAAAAGAAAATCGTCAATAATCAGAAGTCACGTTTTCACCTTCTTCGCATTCTGAATATTCAGCACTTCTCCATTCGAAAGCAGGTGGATTCATCAAGAAGTTTTGTCTATTTTCCAACTTCCGATTTATAGTAATCTACTGTAGAAGACAATTCCTTTTGAAATAAAATACCGGTATTTCAATATGATTTTTTAGAGCTCATTCAGAATTATCATCTTTGAAAAAAAAAAGCAAAATCAACATCTAGACAGTTTTTAACGATGTAATGAGTCATTCATCTGAAAACTAACATCTTATCGGTAGAAAAAAACGCGAATGAAAATCGAATGACGAATAAAAATTGTTGAAAAGGGACTGAAATATATGAAATTAAATTTCACCTGCTCTTTAAAAAATCAGGTTTGAATACAAAACYAAAGGTTTGAAATGTCGAATCCCAGACAAGTTGAAGTTGGAATTTCTGACAAGGAAAAGTATTGCATAACAACAGAAAACAGGGAAGACAGAGTTCAAGAAAATTAGAAGCTGAATCAGAAGAAAAACACTGTCTTTCAGGCTTTTTCCAAATTAAAAGTTGATGAAATTTCAGTCAATCTACATCTAGGTACCGTAACCATCTGCAATGTTTCTTAGTGTGCACAAGGTGTTATTCTGGTACGAAAAAGGAGCTCGAATCTGTGGATTAGAAACGCCAGTGGCCGTGGGCGAAGGTCCCACAACGACAGTTACAGTACCCAAAAACTTCTTTTGTTTTCCGGATTTTTTCCCCTGTTTTTTTACTGCTTATTGTCAAGTTTTGTTCCCGAACAAGCCGGAAAATAATTTTTTTGATATTGGGAAAATCGATTGAACACTTACGGAAATCGGGATAATGAATCCGGAAAAAACAGTATTTTTAGGTTACGGTAGTTGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAAAATTGTTGAAAAGGGACT</pcr_primer_p1>
		<pcr_primer_p2>CATCAACTTTTAATTTGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATAAAAATTGTTGAAAAGGGACTGAAATATATGAAATTAAATTTCACCTGCTCTTTAAAAAATCAGGTTTGAATACAAAACCAAAGGTTTGAAATGTCGAATCCCAGACAAGTTGAAGTTGGAATTTCTGACAAGGAAAAGTATTGCATAACAACAGAAAACAGGGAAGACAGAGTTCAAGAAAATTAGAAGCTGAATCAGAAGAAAAACACTGTCTTTCAGGCTTTTTCCAAATTAAAAGTTGATG</canonical_amplicon>
		<polymorphic_amplicon>ATAAAAATTGTTGAAAAGGGACTGAAATATATGAAATTAAATTTCACCTGCTCTTTAAAAAATCAGGTTTGAATACAAAACYAAAGGTTTGAAATGTCGAATCCCAGACAAGTTGAAGTTGGAATTTCTGACAAGGAAAAGTATTGCATAACAACAGAAAACAGGGAAGACAGAGTTCAAGAAAATTAGAAGCTGAATCAGAAGAAAAACACTGTCTTTCAGGCTTTTTCCAAATTAAAAGTTGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12487</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>234675</contig_pos>
        <strand>+</strand>
        <context>TGAAGTTGGA[A/G]TTTCTGACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACAAAACCAAAGGTTTGAAATGTCGAATCCCAGACAAGTTGAAGTTGGA</left_flank>
        <right_flank>TTTCTGACAAGGAAAAGTATTGCATAACAACAGAAAACAGGGAAGACAGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAATGAGTGCCTGGCCTAGAAAAGAGTAATATCAGGAAAAGAAAAAGAAAATCGTCAATAATCAGAAGTCACGTTTTCACCTTCTTCGCATTCTGAATATTCAGCACTTCTCCATTCGAAAGCAGGTGGATTCATCAAGAAGTTTTGTCTATTTTCCAACTTCCGATTTATAGTAATCTACTGTAGAAGACAATTCCTTTTGAAATAAAATACCGGTATTTCAATATGATTTTTTAGAGCTCATTCAGAATTATCATCTTTGAAAAAAAAAAGCAAAATCAACATCTAGACAGTTTTTAACGATGTAATGAGTCATTCATCTGAAAACTAACATCTTATCGGTAGAAAAAAACGCGAATGAAAATCGAATGACGAATAAAAATTGTTGAAAAGGGACTGAAATATATGAAATTAAATTTCACCTGCTCTTTAAAAAATCAGGTTTGAATACAAAACCAAAGGTTTGAAATGTCGAATCCCAGACAAGTTGAAGTTGGAATTTCTGACAAGGAAAAGTATTGCATAACAACAGAAAACAGGGAAGACAGAGTTCAAGAAAATTAGAAGCTGAATCAGAAGAAAAACACTGTCTTTCAGGCTTTTTCCAAATTAAAAGTTGATGAAATTTCAGTCAATCTACATCTAGGTACCGTAACCATCTGCAATGTTTCTTAGTGTGCACAAGGTGTTATTCTGGTACGAAAAAGGAGCTCGAATCTGTGGATTAGAAACGCCAGTGGCCGTGGGCGAAGGTCCCACAACGACAGTTACAGTACCCAAAAACTTCTTTTGTTTTCCGGATTTTTTCCCCTGTTTTTTTACTGCTTATTGTCAAGTTTTGTTCCCGAACAAGCCGGAAAATAATTTTTTTGATATTGGGAAAATCGATTGAACACTTACGGAAATCGGGATAATGAATCCGGAAAAAACAGTATTTTTAGGTTACGGTAGTTGTCACAGCTCCGAATTTTTTGTAACAGAATAATATAGAAAACAAAA</canonical>
            <polymorphic>CTAATGAGTGCCTGGCCTAGAAAAGAGTAATATCAGGAAAAGAAAAAGAAAATCGTCAATAATCAGAAGTCACGTTTTCACCTTCTTCGCATTCTGAATATTCAGCACTTCTCCATTCGAAAGCAGGTGGATTCATCAAGAAGTTTTGTCTATTTTCCAACTTCCGATTTATAGTAATCTACTGTAGAAGACAATTCCTTTTGAAATAAAATACCGGTATTTCAATATGATTTTTTAGAGCTCATTCAGAATTATCATCTTTGAAAAAAAAAAGCAAAATCAACATCTAGACAGTTTTTAACGATGTAATGAGTCATTCATCTGAAAACTAACATCTTATCGGTAGAAAAAAACGCGAATGAAAATCGAATGACGAATAAAAATTGTTGAAAAGGGACTGAAATATATGAAATTAAATTTCACCTGCTCTTTAAAAAATCAGGTTTGAATACAAAACCAAAGGTTTGAAATGTCGAATCCCAGACAAGTTGAAGTTGGARTTTCTGACAAGGAAAAGTATTGCATAACAACAGAAAACAGGGAAGACAGAGTTCAAGAAAATTAGAAGCTGAATCAGAAGAAAAACACTGTCTTTCAGGCTTTTTCCAAATTAAAAGTTGATGAAATTTCAGTCAATCTACATCTAGGTACCGTAACCATCTGCAATGTTTCTTAGTGTGCACAAGGTGTTATTCTGGTACGAAAAAGGAGCTCGAATCTGTGGATTAGAAACGCCAGTGGCCGTGGGCGAAGGTCCCACAACGACAGTTACAGTACCCAAAAACTTCTTTTGTTTTCCGGATTTTTTCCCCTGTTTTTTTACTGCTTATTGTCAAGTTTTGTTCCCGAACAAGCCGGAAAATAATTTTTTTGATATTGGGAAAATCGATTGAACACTTACGGAAATCGGGATAATGAATCCGGAAAAAACAGTATTTTTAGGTTACGGTAGTTGTCACAGCTCCGAATTTTTTGTAACAGAATAATATAGAAAACAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>415 342 126 83 34</canonical_bands>
                <polymorphic_bands>415 342 209 34</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>239 192 132 103 83 61 57 49 34 29 16 5</canonical_bands>
                <polymorphic_bands>239 192 144 132 103 57 49 34 29 16 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAAAATTGTTGAAAAGGGACT</pcr_primer_p1>
		<pcr_primer_p2>CATCAACTTTTAATTTGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATAAAAATTGTTGAAAAGGGACTGAAATATATGAAATTAAATTTCACCTGCTCTTTAAAAAATCAGGTTTGAATACAAAACCAAAGGTTTGAAATGTCGAATCCCAGACAAGTTGAAGTTGGAATTTCTGACAAGGAAAAGTATTGCATAACAACAGAAAACAGGGAAGACAGAGTTCAAGAAAATTAGAAGCTGAATCAGAAGAAAAACACTGTCTTTCAGGCTTTTTCCAAATTAAAAGTTGATG</canonical_amplicon>
		<polymorphic_amplicon>ATAAAAATTGTTGAAAAGGGACTGAAATATATGAAATTAAATTTCACCTGCTCTTTAAAAAATCAGGTTTGAATACAAAACCAAAGGTTTGAAATGTCGAATCCCAGACAAGTTGAAGTTGGARTTTCTGACAAGGAAAAGTATTGCATAACAACAGAAAACAGGGAAGACAGAGTTCAAGAAAATTAGAAGCTGAATCAGAAGAAAAACACTGTCTTTCAGGCTTTTTCCAAATTAAAAGTTGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12490</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>242940</contig_pos>
        <strand>+</strand>
        <context>CAGATTCATC[A/G]ACATCTGGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAATCTTTCTTGGTCTTCTGAGAATCTCCTCAAACTCTTCAGATTCATC</left_flank>
        <right_flank>ACATCTGGTTCTGGTTGGGTTGTCTTCATGATCATTCTCTTTACTTCGAT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTATCCTCCTTCACATCAACATATTCATCATCTTCATCCTCTGGTCTCCTTGTTTTTCTCAGTGGACGACTGGATTTTTCCACTCGAACCAATGTGATGTATTCCGGAACCTCTTCTTCATCGTAGTAATATTCTGGCTCAGCAGGAGTGGTTGTAGTTGTTGTAGTGGATTTCAACTTGCGAACTTTGCGTGGTTTCATCACAGTCTTCCTTGTGATCTTGAAGTCTAGACCTCCGATTTCTTGAACAACAGTCTCTTCAGCTGGAACACCAGTTCCGAAATGTTTTCGGATTCTGACTTCTCTTATCGTCGCATTTGGATGTTTTGTATTCTTTGTCAATTTCACAACTTCAGTTGGTTCTTCTTCCTCAGGACGATGCTTTGTTCCGTACGAGTGTGGATGCCTTTTAGTTACAGATAGCAGAGCAACTTCTTCCTTCGGCCCAACAATCTTTCTTGGTCTTCTGAGAATCTCCTCAAACTCTTCAGATTCATCGACATCTGGTTCTGGTTGGGTTGTCTTCATGATCATTCTCTTTACTTCGATAACTCCGCCCTCATCGATTCCATTATCAACATCGAATGGACGTCGTCTGCCAGGAATCTTGTGAATCACTTTCTTCACAAGAATGACTCCTGCTTCGGATTCAGAATCTTCATCAGGCCTTCCCGTGATCACCATCTTTTTGATTCCAGTCAAAACTCTGACTCCAAAATCTTCATTCCCTTTCCAATATCCTTCATCATCATCCGGTCGAAGATGTTCGTAGATTTCAATTTTCTCCACTCGTACCGTTTCTCCTCCACTCAAGCGTGGTTCTTCTGGAGTTGGAGGAATAATGATTTTTTTTTTGAGCTTGAGATCCGGAGTAGGCAGACATTCTTTGACCCATTTTGCATATGCTTTGTCATTTAAATTTAAATCATCGGTTTTCACATCAGAACATTTCAGAGATTGACGACGCGGAGGAGGTGGAGTTGAGGCCGTTTCTCGTGT</canonical>
            <polymorphic>GTTTATCCTCCTTCACATCAACATATTCATCATCTTCATCCTCTGGTCTCCTTGTTTTTCTCAGTGGACGACTGGATTTTTCCACTCGAACCAATGTGATGTATTCCGGAACCTCTTCTTCATCGTAGTAATATTCTGGCTCAGCAGGAGTGGTTGTAGTTGTTGTAGTGGATTTCAACTTGCGAACTTTGCGTGGTTTCATCACAGTCTTCCTTGTGATCTTGAAGTCTAGACCTCCGATTTCTTGAACAACAGTCTCTTCAGCTGGAACACCAGTTCCGAAATGTTTTCGGATTCTGACTTCTCTTATCGTCGCATTTGGATGTTTTGTATTCTTTGTCAATTTCACAACTTCAGTTGGTTCTTCTTCCTCAGGACGATGCTTTGTTCCGTACGAGTGTGGATGCCTTTTAGTTACAGATAGCAGAGCAACTTCTTCCTTCGGCCCAACAATCTTTCTTGGTCTTCTGAGAATCTCCTCAAACTCTTCAGATTCATCRACATCTGGTTCTGGTTGGGTTGTCTTCATGATCATTCTCTTTACTTCGATAACTCCGCCCTCATCGATTCCATTATCAACATCGAATGGACGTCGTCTGCCAGGAATCTTGTGAATCACTTTCTTCACAAGAATGACTCCTGCTTCGGATTCAGAATCTTCATCAGGCCTTCCCGTGATCACCATCTTTTTGATTCCAGTCAAAACTCTGACTCCAAAATCTTCATTCCCTTTCCAATATCCTTCATCATCATCCGGTCGAAGATGTTCGTAGATTTCAATTTTCTCCACTCGTACCGTTTCTCCTCCACTCAAGCGTGGTTCTTCTGGAGTTGGAGGAATAATGATTTTTTTTTTGAGCTTGAGATCCGGAGTAGGCAGACATTCTTTGACCCATTTTGCATATGCTTTGTCATTTAAATTTAAATCATCGGTTTTCACATCAGAACATTTCAGAGATTGACGACGCGGAGGAGGTGGAGTTGAGGCCGTTTCTCGTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>412 241 176 87 48 18 18</canonical_bands>
                <polymorphic_bands>460 241 176 87 18 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTGTGGATGCCTTTTAGTTAC</pcr_primer_p1>
		<pcr_primer_p2>GAGTCATTCTTGTGAAGAAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AGTGTGGATGCCTTTTAGTTACAGATAGCAGAGCAACTTCTTCCTTCGGCCCAACAATCTTTCTTGGTCTTCTGAGAATCTCCTCAAACTCTTCAGATTCATCGACATCTGGTTCTGGTTGGGTTGTCTTCATGATCATTCTCTTTACTTCGATAACTCCGCCCTCATCGATTCCATTATCAACATCGAATGGACGTCGTCTGCCAGGAATCTTGTGAATCACTTTCTTCACAAGAATGACTC</canonical_amplicon>
		<polymorphic_amplicon>AGTGTGGATGCCTTTTAGTTACAGATAGCAGAGCAACTTCTTCCTTCGGCCCAACAATCTTTCTTGGTCTTCTGAGAATCTCCTCAAACTCTTCAGATTCATCRACATCTGGTTCTGGTTGGGTTGTCTTCATGATCATTCTCTTTACTTCGATAACTCCGCCCTCATCGATTCCATTATCAACATCGAATGGACGTCGTCTGCCAGGAATCTTGTGAATCACTTTCTTCACAAGAATGACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12491</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>332090</contig_pos>
        <strand>+</strand>
        <context>TGTACTTTAT[A/G]AGTGCTAACG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTAACAGTGCAAAGTGACAGGTCATGCCCGGTCACCTGTTGTACTTTAT</left_flank>
        <right_flank>AGTGCTAACGAAGAGTGTTGATAGCTGAAAGTCTGAAATTTCGTACGATA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATGAGAAGGCGGCGTAAAACCTCTAATCCGAGAACCTCATCAAATTGTTTCGTCTTTTTTTTCAATTGCCTAATCTTTCCGGGTAATCTTCTGGAAGAAAAGTGCATACAATTGAGAGGATATCTGGAGTTTAGTTGAAGTTGAATGAATGAATTCATGTGAAAGAAATGAATAATCGAAGGTAGAAAAGAGCCGAAAATTTTTGAAAAGGATGAGCAGTTTGATGGGGGTGGACATTGTGAGGAAAAGAAAAAAATGAAGGGTCGATCTAGCCGAGGAACTGAAAAAAAACTGAAAACTGAAGAAAAATGCCTCGTTTTTCGAATGCTCTATTCAGGATTCAGAATCTAGAGCTCTCATTCTCCATTAATTTCTCCCACGCCTACACTCTTCTTCTTCACAAAATCAGGTGCCTGTATTGGTGGATCTCATTTCTCGCACCTTCCAGTAACAGTGCAAAGTGACAGGTCATGCCCGGTCACCTGTTGTACTTTATGAGTGCTAACGAAGAGTGTTGATAGCTGAAAGTCTGAAATTTCGTACGATACAAGAAACAACCGTGGGAACTTTGAAAATTACGAGGATGGAAAAGGATGGGAAAGTTCATTCGGTTTGAAGAATGTCGATTTTTGAAAGAAATTAAGGGGTGAGGAGTTTCAAAATTGTAAGATAGGAGAACATGAAAAAAAAACTATCTCGGAACTTCGTTCATATAAGCCTCTCGAAGAGTTGAACTTGTGGGACGATTATTGAAGGTGCGGCGCTGCTATCGACTGAGCCACGCCGGTGAAGCTGGCTCCTGGACGTTTCAGAACCCGACAGTTCAGAACCCGACGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTTTTGTATAGTGGTTTTCGCGCACCAGATGAGCATTGCTCAATTCAATTTTGTGTTTTTCTGCTTTTTTGTTCATTCTCATCTACCGTACTCCAAATAATGATAGGTTCACACTGGGATTCTCTCAA</canonical>
            <polymorphic>AATATGAGAAGGCGGCGTAAAACCTCTAATCCGAGAACCTCATCAAATTGTTTCGTCTTTTTTTTCAATTGCCTAATCTTTCCGGGTAATCTTCTGGAAGAAAAGTGCATACAATTGAGAGGATATCTGGAGTTTAGTTGAAGTTGAATGAATGAATTCATGTGAAAGAAATGAATAATCGAAGGTAGAAAAGAGCCGAAAATTTTTGAAAAGGATGAGCAGTTTGATGGGGGTGGACATTGTGAGGAAAAGAAAAAAATGAAGGGTCGATCTAGCCGAGGAACTGAAAAAAAACTGAAAACTGAAGAAAAATGCCTCGTTTTTCGAATGCTCTATTCAGGATTCAGAATCTAGAGCTCTCATTCTCCATTAATTTCTCCCACGCCTACACTCTTCTTCTTCACAAAATCAGGTGCCTGTATTGGTGGATCTCATTTCTCGCACCTTCCAGTAACAGTGCAAAGTGACAGGTCATGCCCGGTCACCTGTTGTACTTTATRAGTGCTAACGAAGAGTGTTGATAGCTGAAAGTCTGAAATTTCGTACGATACAAGAAACAACCGTGGGAACTTTGAAAATTACGAGGATGGAAAAGGATGGGAAAGTTCATTCGGTTTGAAGAATGTCGATTTTTGAAAGAAATTAAGGGGTGAGGAGTTTCAAAATTGTAAGATAGGAGAACATGAAAAAAAAACTATCTCGGAACTTCGTTCATATAAGCCTCTCGAAGAGTTGAACTTGTGGGACGATTATTGAAGGTGCGGCGCTGCTATCGACTGAGCCACGCCGGTGAAGCTGGCTCCTGGACGTTTCAGAACCCGACAGTTCAGAACCCGACGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTTTTGTATAGTGGTTTTCGCGCACCAGATGAGCATTGCTCAATTCAATTTTGTGTTTTTCTGCTTTTTTGTTCATTCTCATCTACCGTACTCCAAATAATGATAGGTTCACACTGGGATTCTCTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCTTCTTCTTCACAAAATCAG</pcr_primer_p1>
		<pcr_primer_p2>CTTTCAAAAATCGACATTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTCTTCTTCTTCACAAAATCAGGTGCCTGTATTGGTGGATCTCATTTCTCGCACCTTCCAGTAACAGTGCAAAGTGACAGGTCATGCCCGGTCACCTGTTGTACTTTATGAGTGCTAACGAAGAGTGTTGATAGCTGAAAGTCTGAAATTTCGTACGATACAAGAAACAACCGTGGGAACTTTGAAAATTACGAGGATGGAAAAGGATGGGAAAGTTCATTCGGTTTGAAGAATGTCGATTTTTGAAAG</canonical_amplicon>
		<polymorphic_amplicon>ACTCTTCTTCTTCACAAAATCAGGTGCCTGTATTGGTGGATCTCATTTCTCGCACCTTCCAGTAACAGTGCAAAGTGACAGGTCATGCCCGGTCACCTGTTGTACTTTATRAGTGCTAACGAAGAGTGTTGATAGCTGAAAGTCTGAAATTTCGTACGATACAAGAAACAACCGTGGGAACTTTGAAAATTACGAGGATGGAAAAGGATGGGAAAGTTCATTCGGTTTGAAGAATGTCGATTTTTGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12492</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>334113</contig_pos>
        <strand>+</strand>
        <context>TCCTTTAGCT[C/T]CAAAATTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACTCTATGAGATCCAGGATCTTACGTCAGCTGAGAAAGATCCTTTAGCT</left_flank>
        <right_flank>CAAAATTTTTTAGCTAAATAATCTGACTGGAAATGAAACGGACATCTTTT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAAACGAGAGGAAGGAGCTTCAGGAGGAGATGCTCGAAGGGACTGAACGTATCCGCATTACACATGTGCATGTGTGCACGACATCTCCCAACAACTGATTCACCCTCGCATCCCACCCTCTTCTTTTTTCTGTGCCAGAGTGAATTTTTTGAACAAACATTGACTTTTTCTATCGTCATTCACTTCTTTATTTTGATCAGGAAATCTATTTTAGTTGGGTCAGTTTGGATGGATTTTCGAAAAGGAGTGGATGAGCTAATGGATAAGAAGATTTAAGGAAAGGATTCTAGGGGCACTACGTTTGAGGTGTAGCAAGATTTGACGTGCGATGGGAGGTTCTAGAACATTCCATAGGGTCGTAATCAAAAGATCTATAATGTTCAAGAACAACGAAGCCTTCTGATGACGTTGTAGACACATCTGTTTACGGTAATCATTACTCAAGTTTACTCTATGAGATCCAGGATCTTACGTCAGCTGAGAAAGATCCTTTAGCTTCAAAATTTTTTAGCTAAATAATCTGACTGGAAATGAAACGGACATCTTTTGAAATCCATTTTAATCTTTCAGTATAAGGAAAATTTCAAATTCTACCAGTAATCATAAGAACTAGAAAAGCTTCTATTTTTAGGCTTCAGTATTCTCATGGCTACGGAAACATATTGAACAGTTATGAAATAGACTTCTGAGCATTTAGAAGAGGATTCTAGTTCTTCGAAAATTTAAAGTTAATGACTCATAGATAGAAGAAGAGTCCTAAACTTGGATACACTGTACTTTTCGAAGCAGATTGGAAAATGAATGAATTAGCTCAAGAATACCGTAAAACCTATAATAGAAGAGTCCCTAACTTTTAACTTTGAGCCAATTTTCCACGGTACCTGTCAAAGGTATAAAAAAGTTTTCAACTGATAAATTTTTTATCATAATATCAGAAATATTTTGTCAGTTGACACATTTTTGATATCTTGCATAGGAATTCAGATACTTGCGCTCAA</canonical>
            <polymorphic>GGAAAACGAGAGGAAGGAGCTTCAGGAGGAGATGCTCGAAGGGACTGAACGTATCCGCATTACACATGTGCATGTGTGCACGACATCTCCCAACAACTGATTCACCCTCGCATCCCACCCTCTTCTTTTTTCTGTGCCAGAGTGAATTTTTTGAACAAACATTGACTTTTTCTATCGTCATTCACTTCTTTATTTTGATCAGGAAATCTATTTTAGTTGGGTCAGTTTGGATGGATTTTCGAAAAGGAGTGGATGAGCTAATGGATAAGAAGATTTAAGGAAAGGATTCTAGGGGCACTACGTTTGAGGTGTAGCAAGATTTGACGTGCGATGGGAGGTTCTAGAACATTCCATAGGGTCGTAATCAAAAGATCTATAATGTTCAAGAACAACGAAGCCTTCTGATGACGTTGTAGACACATCTGTTTACGGTAATCATTACTCAAGTTTACTCTATGAGATCCAGGATCTTACGTCAGCTGAGAAAGATCCTTTAGCTYCAAAATTTTTTAGCTAAATAATCTGACTGGAAATGAAACGGACATCTTTTGAAATCCATTTTAATCTTTCAGTATAAGGAAAATTTCAAATTCTACCAGTAATCATAAGAACTAGAAAAGCTTCTATTTTTAGGCTTCAGTATTCTCATGGCTACGGAAACATATTGAACAGTTATGAAATAGACTTCTGAGCATTTAGAAGAGGATTCTAGTTCTTCGAAAATTTAAAGTTAATGACTCATAGATAGAAGAAGAGTCCTAAACTTGGATACACTGTACTTTTCGAAGCAGATTGGAAAATGAATGAATTAGCTCAAGAATACCGTAAAACCTATAATAGAAGAGTCCCTAACTTTTAACTTTGAGCCAATTTTCCACGGTACCTGTCAAAGGTATAAAAAAGTTTTCAACTGATAAATTTTTTATCATAATATCAGAAATATTTTGTCAGTTGACACATTTTTGATATCTTGCATAGGAATTCAGATACTTGCGCTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGATGACGTTGTAGACACAT</pcr_primer_p1>
		<pcr_primer_p2>CATGAGAATACTGAAGCCTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTGATGACGTTGTAGACACATCTGTTTACGGTAATCATTACTCAAGTTTACTCTATGAGATCCAGGATCTTACGTCAGCTGAGAAAGATCCTTTAGCTTCAAAATTTTTTAGCTAAATAATCTGACTGGAAATGAAACGGACATCTTTTGAAATCCATTTTAATCTTTCAGTATAAGGAAAATTTCAAATTCTACCAGTAATCATAAGAACTAGAAAAGCTTCTATTTTTAGGCTTCAGTATTCTCATG</canonical_amplicon>
		<polymorphic_amplicon>TCTGATGACGTTGTAGACACATCTGTTTACGGTAATCATTACTCAAGTTTACTCTATGAGATCCAGGATCTTACGTCAGCTGAGAAAGATCCTTTAGCTYCAAAATTTTTTAGCTAAATAATCTGACTGGAAATGAAACGGACATCTTTTGAAATCCATTTTAATCTTTCAGTATAAGGAAAATTTCAAATTCTACCAGTAATCATAAGAACTAGAAAAGCTTCTATTTTTAGGCTTCAGTATTCTCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12493</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>352057</contig_pos>
        <strand>+</strand>
        <context>TTCCTCCGGA[A/T]GTCGAAGGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTTTCAAGACTGATTTTCTCACAACCGCCATTTCTTTTATTCCTCCGGA</left_flank>
        <right_flank>GTCGAAGGTTCCGATAATTCTACAGGGGATGACTCAGGAATCACTACTGG</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCTCTCCACGATTCTGCTACGGCCGTCTTTTCAACCTTTACTCCACTCTTTTTGAGCATTTTTATGCGGAGCCTTTGATTCAGCCTGTTGATAGTTTTAGCCGAGGCGTACTCATCGTATTCCTGATCATCAGAATCTGGATAAATTTCTTCTCCCTCTGATAGTTCCCCGTCGTCATACAATGCTAGATCCAGTAGTGGACGTTTCCCAGATGCAAGCGAGAAATAACGATGACAGTGATGTGTGTTGTGCATATCGAGAGAAACATCTCCTTCCGATGGTACTGTTGATTCTCCTTGACACCGATCGAAGTAATGCACATCCAATCCGTTAAACTTTATCTGTCTACGACGGGAACCTGACAAAAAATAATGCATTATAAATCCGTTTAAATAGATAATCCAAACCTTGCATATGATTTTCTCTAATTTTGAACGCAGCTTTCGGTGCTTTCAAGACTGATTTTCTCACAACCGCCATTTCTTTTATTCCTCCGGAAGTCGAAGGTTCCGATAATTCTACAGGGGATGACTCAGGAATCACTACTGGATCTACTGGGGCTACTGGAGCTAGCGACGGTTGAGGAACAATTTCAATTGGACGAGTGACCGGAGTTACAGTAATTGATTTCAAGAAGTTGGATGGTGACACTTTGAACCGTAGAGACGAGGTTGAGCCTTGTCGCAGAAGTGGTGCTGTTGGAAGAGATGGAGTGGAGCAAGACTTCTGAAATTTTACAGGCTATTTTTAGAAGCTTCTTTCAATACATATCTTTCTTATATGTAAAACGCTAGAGGCGTCTGTTGGTCCTCGTGTCACTCTGTGGACTTTTGAAAAGCTTGAAAATTAAATATAGATTTACGTGACTCTTTAAGAATAATTGAGGAGCAGAGCCACGAACTAGTGATAAAACTAGATTGAATCGCGCCGAAGGCGCACCAGCTTACTGGTTTATAATAGTTTGGTATTGTTTGAAACTTCGAACCTACATTAAACATT</canonical>
            <polymorphic>CGCTCTCCACGATTCTGCTACGGCCGTCTTTTCAACCTTTACTCCACTCTTTTTGAGCATTTTTATGCGGAGCCTTTGATTCAGCCTGTTGATAGTTTTAGCCGAGGCGTACTCATCGTATTCCTGATCATCAGAATCTGGATAAATTTCTTCTCCCTCTGATAGTTCCCCGTCGTCATACAATGCTAGATCCAGTAGTGGACGTTTCCCAGATGCAAGCGAGAAATAACGATGACAGTGATGTGTGTTGTGCATATCGAGAGAAACATCTCCTTCCGATGGTACTGTTGATTCTCCTTGACACCGATCGAAGTAATGCACATCCAATCCGTTAAACTTTATCTGTCTACGACGGGAACCTGACAAAAAATAATGCATTATAAATCCGTTTAAATAGATAATCCAAACCTTGCATATGATTTTCTCTAATTTTGAACGCAGCTTTCGGTGCTTTCAAGACTGATTTTCTCACAACCGCCATTTCTTTTATTCCTCCGGAWGTCGAAGGTTCCGATAATTCTACAGGGGATGACTCAGGAATCACTACTGGATCTACTGGGGCTACTGGAGCTAGCGACGGTTGAGGAACAATTTCAATTGGACGAGTGACCGGAGTTACAGTAATTGATTTCAAGAAGTTGGATGGTGACACTTTGAACCGTAGAGACGAGGTTGAGCCTTGTCGCAGAAGTGGTGCTGTTGGAAGAGATGGAGTGGAGCAAGACTTCTGAAATTTTACAGGCTATTTTTAGAAGCTTCTTTCAATACATATCTTTCTTATATGTAAAACGCTAGAGGCGTCTGTTGGTCCTCGTGTCACTCTGTGGACTTTTGAAAAGCTTGAAAATTAAATATAGATTTACGTGACTCTTTAAGAATAATTGAGGAGCAGAGCCACGAACTAGTGATAAAACTAGATTGAATCGCGCCGAAGGCGCACCAGCTTACTGGTTTATAATAGTTTGGTATTGTTTGAAACTTCGAACCTACATTAAACATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGATAATCCAAACCTTGCATA</pcr_primer_p1>
		<pcr_primer_p2>CAACTTCTTGAAATCAATTACTGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATAGATAATCCAAACCTTGCATATGATTTTCTCTAATTTTGAACGCAGCTTTCGGTGCTTTCAAGACTGATTTTCTCACAACCGCCATTTCTTTTATTCCTCCGGAAGTCGAAGGTTCCGATAATTCTACAGGGGATGACTCAGGAATCACTACTGGATCTACTGGGGCTACTGGAGCTAGCGACGGTTGAGGAACAATTTCAATTGGACGAGTGACCGGAGTTACAGTAATTGATTTCAAGAAGTTG</canonical_amplicon>
		<polymorphic_amplicon>ATAGATAATCCAAACCTTGCATATGATTTTCTCTAATTTTGAACGCAGCTTTCGGTGCTTTCAAGACTGATTTTCTCACAACCGCCATTTCTTTTATTCCTCCGGAWGTCGAAGGTTCCGATAATTCTACAGGGGATGACTCAGGAATCACTACTGGATCTACTGGGGCTACTGGAGCTAGCGACGGTTGAGGAACAATTTCAATTGGACGAGTGACCGGAGTTACAGTAATTGATTTCAAGAAGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12494</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>371431</contig_pos>
        <strand>+</strand>
        <context>TCCGATTAGA[A/G]ACAGAACGCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGAGCATGGAGTCTAGTAATGCAGGCTTAATTAAAGGCTTCCGATTAGA</left_flank>
        <right_flank>ACAGAACGCCATCAAAATATCGAGAAAATCTGATAATTGGTAAGATTAGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTAAAGAATGGTGGTAAAAAGAGGGAACCATACATGTCACGGGCCGGGCCGGGTCAAAATGAAAAATTCTCCGGCCCGGGTCAGACTCTAAAATTTCAAAATTTTGAAGTTTTTAAAAAAATTTTGAAGTTTTCATCAAAATTTCTATTATTTGAAGTTTCGATACTTTTATAAGGGCGAATTATCCCAGGAAGTTGTTTTTGAGGTGAAATTCAATAAATTTTTCTCGAAATGTTTCGAAAAATCAGCTACACGGGCCGACCGGGCCGGGTCACCCGGTCGGCCCGGATTTTGACAAGTATGGGGACATTAGAGAGGGATGGGAAAGTAACATTCAGATGTGTAAAAGGGACGCTTTTCGAACACGCAACGGCTCAATCTATTGAAACAGATGTATGGCTAATTGTGAACCTCGCACTGAAAGCAGGGACGGGTTGAGCAGGTGAAAAGAGCATGGAGTCTAGTAATGCAGGCTTAATTAAAGGCTTCCGATTAGAAACAGAACGCCATCAAAATATCGAGAAAATCTGATAATTGGTAAGATTAGTTCCTAATTAAGAATGGGTTTCGAGTGTGGAAAGTAATGAGTGGGTCTCAAACAAATAGAATGAATATAGAGCAGGTTCGATCATAAGATGAATCACATTTGCGGGAGAAAAATCTTGTCAGAAATTTTTTTTTAAATAAATGCTTTAGGTGGTTCGAATACATTGCATCGTCAAATAAGTCAATGATAAGTGTTCCAATGGATTATTACTTTCGAGCAAAATCTGACGATGGTCCGTTATACAGCCGTTTTCCGGCAAGTTCCGTGTAGAACTTCGCCAATATCACAACCAACTTCTGACAAAAAGTTACAAGCTGACAGCCGGGATAGTAGTCGAGTAGCTAAGCCGACATCCCAGTTAATTTAAAATTAATGGTTTGTCATGTTTTTATCGTGACTGAAACTATTTAAACATGAATGTGAATCCAAAGTATCGGATAGAAGTATATTG</canonical>
            <polymorphic>ACTTAAAGAATGGTGGTAAAAAGAGGGAACCATACATGTCACGGGCCGGGCCGGGTCAAAATGAAAAATTCTCCGGCCCGGGTCAGACTCTAAAATTTCAAAATTTTGAAGTTTTTAAAAAAATTTTGAAGTTTTCATCAAAATTTCTATTATTTGAAGTTTCGATACTTTTATAAGGGCGAATTATCCCAGGAAGTTGTTTTTGAGGTGAAATTCAATAAATTTTTCTCGAAATGTTTCGAAAAATCAGCTACACGGGCCGACCGGGCCGGGTCACCCGGTCGGCCCGGATTTTGACAAGTATGGGGACATTAGAGAGGGATGGGAAAGTAACATTCAGATGTGTAAAAGGGACGCTTTTCGAACACGCAACGGCTCAATCTATTGAAACAGATGTATGGCTAATTGTGAACCTCGCACTGAAAGCAGGGACGGGTTGAGCAGGTGAAAAGAGCATGGAGTCTAGTAATGCAGGCTTAATTAAAGGCTTCCGATTAGARACAGAACGCCATCAAAATATCGAGAAAATCTGATAATTGGTAAGATTAGTTCCTAATTAAGAATGGGTTTCGAGTGTGGAAAGTAATGAGTGGGTCTCAAACAAATAGAATGAATATAGAGCAGGTTCGATCATAAGATGAATCACATTTGCGGGAGAAAAATCTTGTCAGAAATTTTTTTTTAAATAAATGCTTTAGGTGGTTCGAATACATTGCATCGTCAAATAAGTCAATGATAAGTGTTCCAATGGATTATTACTTTCGAGCAAAATCTGACGATGGTCCGTTATACAGCCGTTTTCCGGCAAGTTCCGTGTAGAACTTCGCCAATATCACAACCAACTTCTGACAAAAAGTTACAAGCTGACAGCCGGGATAGTAGTCGAGTAGCTAAGCCGACATCCCAGTTAATTTAAAATTAATGGTTTGTCATGTTTTTATCGTGACTGAAACTATTTAAACATGAATGTGAATCCAAAGTATCGGATAGAAGTATATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACAGATGTATGGCTAATTGT</pcr_primer_p1>
		<pcr_primer_p2>TATGATCGAACCTGCTCTATATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAACAGATGTATGGCTAATTGTGAACCTCGCACTGAAAGCAGGGACGGGTTGAGCAGGTGAAAAGAGCATGGAGTCTAGTAATGCAGGCTTAATTAAAGGCTTCCGATTAGAAACAGAACGCCATCAAAATATCGAGAAAATCTGATAATTGGTAAGATTAGTTCCTAATTAAGAATGGGTTTCGAGTGTGGAAAGTAATGAGTGGGTCTCAAACAAATAGAATGAATATAGAGCAGGTTCGATCATA</canonical_amplicon>
		<polymorphic_amplicon>GAAACAGATGTATGGCTAATTGTGAACCTCGCACTGAAAGCAGGGACGGGTTGAGCAGGTGAAAAGAGCATGGAGTCTAGTAATGCAGGCTTAATTAAAGGCTTCCGATTAGARACAGAACGCCATCAAAATATCGAGAAAATCTGATAATTGGTAAGATTAGTTCCTAATTAAGAATGGGTTTCGAGTGTGGAAAGTAATGAGTGGGTCTCAAACAAATAGAATGAATATAGAGCAGGTTCGATCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12495</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>371614</contig_pos>
        <strand></strand>
        <context>AAWTTTTTTT[T/A]AAATAAATGC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATAAGATGAATCACATTTGCGGGAGAAAAATCTTGTCAGAAATTTTTTTT</left_flank>
        <right_flank>AAATAAATGCTTTAGGTGGTTCGAATACATTGCATCGTCAAATAAGTCAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATCCCAGGAAGTTGTTTTTGAGGTGAAATTCAATAAATTTTTCTCGAAATGTTTCGAAAAATCAGCTACACGGGCCGACCGGGCCGGGTCACCCGGTCGGCCCGGATTTTGACAAGTATGGGGACATTAGAGAGGGATGGGAAAGTAACATTCAGATGTGTAAAAGGGACGCTTTTCGAACACGCAACGGCTCAATCTATTGAAACAGATGTATGGCTAATTGTGAACCTCGCACTGAAAGCAGGGACGGGTTGAGCAGGTGAAAAGAGCATGGAGTCTAGTAATGCAGGCTTAATTAAAGGCTTCCGATTAGAAACAGAACGCCATCAAAATATCGAGAAAATCTGATAATTGGTAAGATTAGTTCCTAATTAAGAATGGGTTTCGAGTGTGGAAAGTAATGAGTGGGTCTCAAACAAATAGAATGAATATAGAGCAGGTTCGATCATAAGATGAATCACATTTGCGGGAGAAAAATCTTGTCAGAAATTTTTTTTTAAATAAATGCTTTAGGTGGTTCGAATACATTGCATCGTCAAATAAGTCAATGATAAGTGTTCCAATGGATTATTACTTTCGAGCAAAATCTGACGATGGTCCGTTATACAGCCGTTTTCCGGCAAGTTCCGTGTAGAACTTCGCCAATATCACAACCAACTTCTGACAAAAAGTTACAAGCTGACAGCCGGGATAGTAGTCGAGTAGCTAAGCCGACATCCCAGTTAATTTAAAATTAATGGTTTGTCATGTTTTTATCGTGACTGAAACTATTTAAACATGAATGTGAATCCAAAGTATCGGATAGAAGTATATTGCATTTGAGCATTGAATTGTTCACTTCAAGCTCATAAGTGATTTGAAGCTGGCCGAATACCACATTCGTTCAAACAGAAGCCCACCCTATATGTCCACTTTGAGCACAATTACCATAGAGTTATCAAAAATTTATTAACTGATAAAGTATTGATGATATTATGATAACCATTTTATCTGTTGAC</canonical>
            <polymorphic>TTATCCCAGGAAGTTGTTTTTGAGGTGAAATTCAATAAATTTTTCTCGAAATGTTTCGAAAAATCAGCTACACGGGCCGACCGGGCCGGGTCACCCGGTCGGCCCGGATTTTGACAAGTATGGGGACATTAGAGAGGGATGGGAAAGTAACATTCAGATGTGTAAAAGGGACGCTTTTCGAACACGCAACGGCTCAATCTATTGAAACAGATGTATGGCTAATTGTGAACCTCGCACTGAAAGCAGGGACGGGTTGAGCAGGTGAAAAGAGCATGGAGTCTAGTAATGCAGGCTTAATTAAAGGCTTCCGATTAGAAACAGAACGCCATCAAAATATCGAGAAAATCTGATAATTGGTAAGATTAGTTCCTAATTAAGAATGGGTTTCGAGTGTGGAAAGTAATGAGTGGGTCTCAAACAAATAGAATGAATATAGAGCAGGTTCGATCATAAGATGAATCACATTTGCGGGAGAAAAATCTTGTCAGAAATTTTTTTTWAAATAAATGCTTTAGGTGGTTCGAATACATTGCATCGTCAAATAAGTCAATGATAAGTGTTCCAATGGATTATTACTTTCGAGCAAAATCTGACGATGGTCCGTTATACAGCCGTTTTCCGGCAAGTTCCGTGTAGAACTTCGCCAATATCACAACCAACTTCTGACAAAAAGTTACAAGCTGACAGCCGGGATAGTAGTCGAGTAGCTAAGCCGACATCCCAGTTAATTTAAAATTAATGGTTTGTCATGTTTTTATCGTGACTGAAACTATTTAAACATGAATGTGAATCCAAAGTATCGGATAGAAGTATATTGCATTTGAGCATTGAATTGTTCACTTCAAGCTCATAAGTGATTTGAAGCTGGCCGAATACCACATTCGTTCAAACAGAAGCCCACCCTATATGTCCACTTTGAGCACAATTACCATAGAGTTATCAAAAATTTATTAACTGATAAAGTATTGATGATATTATGATAACCATTTTATCTGTTGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 231 225 44</canonical_bands>
                <polymorphic_bands>731 225 44</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>294 226 177 125 76 49 38 6 5 4</canonical_bands>
                <polymorphic_bands>351 294 177 76 49 38 6 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATCAAAATATCGAGAAAATC</pcr_primer_p1>
		<pcr_primer_p2>ATAATCCATTGGAACACTTATCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCATCAAAATATCGAGAAAATCTGATAATTGGTAAGATTAGTTCCTAATTAAGAATGGGTTTCGAGTGTGGAAAGTAATGAGTGGGTCTCAAACAAATAGAATGAATATAGAGCAGGTTCGATCATAAGATGAATCACATTTGCGGGAGAAAAATCTTGTCAGAAATTTTTTTTTAAATAAATGCTTTAGGTGGTTCGAATACATTGCATCGTCAAATAAGTCAATGATAAGTGTTCCAATGGATTAT</canonical_amplicon>
		<polymorphic_amplicon>CCATCAAAATATCGAGAAAATCTGATAATTGGTAAGATTAGTTCCTAATTAAGAATGGGTTTCGAGTGTGGAAAGTAATGAGTGGGTCTCAAACAAATAGAATGAATATAGAGCAGGTTCGATCATAAGATGAATCACATTTGCGGGAGAAAAATCTTGTCAGAAATTTTTTTTWAAATAAATGCTTTAGGTGGTTCGAATACATTGCATCGTCAAATAAGTCAATGATAAGTGTTCCAATGGATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12496</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>371747</contig_pos>
        <strand></strand>
        <context>caagttccgt[G/C]tagaacttcg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GCAAAATCTGACGATGGTCCGTTATACAGCCGTTTTCCGGCAAGTTCCGT</left_flank>
        <right_flank>TAGAACTTCGCCAATATCACAACCAACTTCTGACAAAAAGTTACAAGCTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGGGATGGGAAAGTAACATTCAGATGTGTAAAAGGGACGCTTTTCGAACACGCAACGGCTCAATCTATTGAAACAGATGTATGGCTAATTGTGAACCTCGCACTGAAAGCAGGGACGGGTTGAGCAGGTGAAAAGAGCATGGAGTCTAGTAATGCAGGCTTAATTAAAGGCTTCCGATTAGAAACAGAACGCCATCAAAATATCGAGAAAATCTGATAATTGGTAAGATTAGTTCCTAATTAAGAATGGGTTTCGAGTGTGGAAAGTAATGAGTGGGTCTCAAACAAATAGAATGAATATAGAGCAGGTTCGATCATAAGATGAATCACATTTGCGGGAGAAAAATCTTGTCAGAAATTTTTTTTTAAATAAATGCTTTAGGTGGTTCGAATACATTGCATCGTCAAATAAGTCAATGATAAGTGTTCCAATGGATTATTACTTTCGAGCAAAATCTGACGATGGTCCGTTATACAGCCGTTTTCCGGCAAGTTCCGTGTAGAACTTCGCCAATATCACAACCAACTTCTGACAAAAAGTTACAAGCTGACAGCCGGGATAGTAGTCGAGTAGCTAAGCCGACATCCCAGTTAATTTAAAATTAATGGTTTGTCATGTTTTTATCGTGACTGAAACTATTTAAACATGAATGTGAATCCAAAGTATCGGATAGAAGTATATTGCATTTGAGCATTGAATTGTTCACTTCAAGCTCATAAGTGATTTGAAGCTGGCCGAATACCACATTCGTTCAAACAGAAGCCCACCCTATATGTCCACTTTGAGCACAATTACCATAGAGTTATCAAAAATTTATTAACTGATAAAGTATTGATGATATTATGATAACCATTTTATCTGTTGACAATTTTTTGATATCTTTCACAGGAATCGATCTAATTAAACTCAAAAGGCACGTATGGGGTGGGGATATATAATAGTGTTGACAAATGGAAACAGAGTGTATTCTCCATTTTAACAATTTTCAGATTGAGATAG</canonical>
            <polymorphic>GAGGGATGGGAAAGTAACATTCAGATGTGTAAAAGGGACGCTTTTCGAACACGCAACGGCTCAATCTATTGAAACAGATGTATGGCTAATTGTGAACCTCGCACTGAAAGCAGGGACGGGTTGAGCAGGTGAAAAGAGCATGGAGTCTAGTAATGCAGGCTTAATTAAAGGCTTCCGATTAGAAACAGAACGCCATCAAAATATCGAGAAAATCTGATAATTGGTAAGATTAGTTCCTAATTAAGAATGGGTTTCGAGTGTGGAAAGTAATGAGTGGGTCTCAAACAAATAGAATGAATATAGAGCAGGTTCGATCATAAGATGAATCACATTTGCGGGAGAAAAATCTTGTCAGAAATTTTTTTTTAAATAAATGCTTTAGGTGGTTCGAATACATTGCATCGTCAAATAAGTCAATGATAAGTGTTCCAATGGATTATTACTTTCGAGCAAAATCTGACGATGGTCCGTTATACAGCCGTTTTCCGGCAAGTTCCGTSTAGAACTTCGCCAATATCACAACCAACTTCTGACAAAAAGTTACAAGCTGACAGCCGGGATAGTAGTCGAGTAGCTAAGCCGACATCCCAGTTAATTTAAAATTAATGGTTTGTCATGTTTTTATCGTGACTGAAACTATTTAAACATGAATGTGAATCCAAAGTATCGGATAGAAGTATATTGCATTTGAGCATTGAATTGTTCACTTCAAGCTCATAAGTGATTTGAAGCTGGCCGAATACCACATTCGTTCAAACAGAAGCCCACCCTATATGTCCACTTTGAGCACAATTACCATAGAGTTATCAAAAATTTATTAACTGATAAAGTATTGATGATATTATGATAACCATTTTATCTGTTGACAATTTTTTGATATCTTTCACAGGAATCGATCTAATTAAACTCAAAAGGCACGTATGGGGTGGGGATATATAATAGTGTTGACAAATGGAAACAGAGTGTATTCTCCATTTTAACAATTTTCAGATTGAGATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>129 110 97 74 56 53 51 43 41 35 31 29 28 26 22 22 22 21 19 17 16 14 13 11 9 9 2</canonical_bands>
                <polymorphic_bands>129 110 97 93 56 53 51 43 41 35 31 29 28 26 22 22 22 21 17 16 14 13 11 9 9 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACATTGCATCGTCAAATAAGT</pcr_primer_p1>
		<pcr_primer_p2>AGTTTCAGTCACGATAAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATACATTGCATCGTCAAATAAGTCAATGATAAGTGTTCCAATGGATTATTACTTTCGAGCAAAATCTGACGATGGTCCGTTATACAGCCGTTTTCCGGCAAGTTCCGTGTAGAACTTCGCCAATATCACAACCAACTTCTGACAAAAAGTTACAAGCTGACAGCCGGGATAGTAGTCGAGTAGCTAAGCCGACATCCCAGTTAATTTAAAATTAATGGTTTGTCATGTTTTTATCGTGACTGAAACT</canonical_amplicon>
		<polymorphic_amplicon>ATACATTGCATCGTCAAATAAGTCAATGATAAGTGTTCCAATGGATTATTACTTTCGAGCAAAATCTGACGATGGTCCGTTATACAGCCGTTTTCCGGCAAGTTCCGTSTAGAACTTCGCCAATATCACAACCAACTTCTGACAAAAAGTTACAAGCTGACAGCCGGGATAGTAGTCGAGTAGCTAAGCCGACATCCCAGTTAATTTAAAATTAATGGTTTGTCATGTTTTTATCGTGACTGAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12497</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>371792</contig_pos>
        <strand></strand>
        <context>aaaaagttac[A/C]agctgacagC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCGTGTAGAACTTCGCCAATATCACAACCAACTTCTGACAAAAAGTTAC</left_flank>
        <right_flank>AGCTGACAGCCGGGATAGTAGTCGAGTAGCTAAGCCGACATCCCAGTTAA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAACACGCAACGGCTCAATCTATTGAAACAGATGTATGGCTAATTGTGAACCTCGCACTGAAAGCAGGGACGGGTTGAGCAGGTGAAAAGAGCATGGAGTCTAGTAATGCAGGCTTAATTAAAGGCTTCCGATTAGAAACAGAACGCCATCAAAATATCGAGAAAATCTGATAATTGGTAAGATTAGTTCCTAATTAAGAATGGGTTTCGAGTGTGGAAAGTAATGAGTGGGTCTCAAACAAATAGAATGAATATAGAGCAGGTTCGATCATAAGATGAATCACATTTGCGGGAGAAAAATCTTGTCAGAAATTTTTTTTTAAATAAATGCTTTAGGTGGTTCGAATACATTGCATCGTCAAATAAGTCAATGATAAGTGTTCCAATGGATTATTACTTTCGAGCAAAATCTGACGATGGTCCGTTATACAGCCGTTTTCCGGCAAGTTCCGTGTAGAACTTCGCCAATATCACAACCAACTTCTGACAAAAAGTTACAAGCTGACAGCCGGGATAGTAGTCGAGTAGCTAAGCCGACATCCCAGTTAATTTAAAATTAATGGTTTGTCATGTTTTTATCGTGACTGAAACTATTTAAACATGAATGTGAATCCAAAGTATCGGATAGAAGTATATTGCATTTGAGCATTGAATTGTTCACTTCAAGCTCATAAGTGATTTGAAGCTGGCCGAATACCACATTCGTTCAAACAGAAGCCCACCCTATATGTCCACTTTGAGCACAATTACCATAGAGTTATCAAAAATTTATTAACTGATAAAGTATTGATGATATTATGATAACCATTTTATCTGTTGACAATTTTTTGATATCTTTCACAGGAATCGATCTAATTAAACTCAAAAGGCACGTATGGGGTGGGGATATATAATAGTGTTGACAAATGGAAACAGAGTGTATTCTCCATTTTAACAATTTTCAGATTGAGATAGATAATTTGAAAACATAAAATAGAAAAGTTTGCATTGGGTATCTGA</canonical>
            <polymorphic>CGAACACGCAACGGCTCAATCTATTGAAACAGATGTATGGCTAATTGTGAACCTCGCACTGAAAGCAGGGACGGGTTGAGCAGGTGAAAAGAGCATGGAGTCTAGTAATGCAGGCTTAATTAAAGGCTTCCGATTAGAAACAGAACGCCATCAAAATATCGAGAAAATCTGATAATTGGTAAGATTAGTTCCTAATTAAGAATGGGTTTCGAGTGTGGAAAGTAATGAGTGGGTCTCAAACAAATAGAATGAATATAGAGCAGGTTCGATCATAAGATGAATCACATTTGCGGGAGAAAAATCTTGTCAGAAATTTTTTTTTAAATAAATGCTTTAGGTGGTTCGAATACATTGCATCGTCAAATAAGTCAATGATAAGTGTTCCAATGGATTATTACTTTCGAGCAAAATCTGACGATGGTCCGTTATACAGCCGTTTTCCGGCAAGTTCCGTGTAGAACTTCGCCAATATCACAACCAACTTCTGACAAAAAGTTACMAGCTGACAGCCGGGATAGTAGTCGAGTAGCTAAGCCGACATCCCAGTTAATTTAAAATTAATGGTTTGTCATGTTTTTATCGTGACTGAAACTATTTAAACATGAATGTGAATCCAAAGTATCGGATAGAAGTATATTGCATTTGAGCATTGAATTGTTCACTTCAAGCTCATAAGTGATTTGAAGCTGGCCGAATACCACATTCGTTCAAACAGAAGCCCACCCTATATGTCCACTTTGAGCACAATTACCATAGAGTTATCAAAAATTTATTAACTGATAAAGTATTGATGATATTATGATAACCATTTTATCTGTTGACAATTTTTTGATATCTTTCACAGGAATCGATCTAATTAAACTCAAAAGGCACGTATGGGGTGGGGATATATAATAGTGTTGACAAATGGAAACAGAGTGTATTCTCCATTTTAACAATTTTCAGATTGAGATAGATAATTTGAAAACATAAAATAGAAAAGTTTGCATTGGGTATCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACATTGCATCGTCAAATAAGT</pcr_primer_p1>
		<pcr_primer_p2>AGTTTCAGTCACGATAAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATACATTGCATCGTCAAATAAGTCAATGATAAGTGTTCCAATGGATTATTACTTTCGAGCAAAATCTGACGATGGTCCGTTATACAGCCGTTTTCCGGCAAGTTCCGTGTAGAACTTCGCCAATATCACAACCAACTTCTGACAAAAAGTTACAAGCTGACAGCCGGGATAGTAGTCGAGTAGCTAAGCCGACATCCCAGTTAATTTAAAATTAATGGTTTGTCATGTTTTTATCGTGACTGAAACT</canonical_amplicon>
		<polymorphic_amplicon>ATACATTGCATCGTCAAATAAGTCAATGATAAGTGTTCCAATGGATTATTACTTTCGAGCAAAATCTGACGATGGTCCGTTATACAGCCGTTTTCCGGCAAGTTCCGTGTAGAACTTCGCCAATATCACAACCAACTTCTGACAAAAAGTTACMAGCTGACAGCCGGGATAGTAGTCGAGTAGCTAAGCCGACATCCCAGTTAATTTAAAATTAATGGTTTGTCATGTTTTTATCGTGACTGAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12498</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>371842</contig_pos>
        <strand>+</strand>
        <context>ATCCCAGTTA[A/G]TTTAAAATTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGCTGACAGCCGGGATAGTAGTCGAGTAGCTAAGCCGACATCCCAGTTA</left_flank>
        <right_flank>TTTAAAATTAATGGTTTGTCATGTTTTTATCGTGACTGAAACTATTTAAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTCGCACTGAAAGCAGGGACGGGTTGAGCAGGTGAAAAGAGCATGGAGTCTAGTAATGCAGGCTTAATTAAAGGCTTCCGATTAGAAACAGAACGCCATCAAAATATCGAGAAAATCTGATAATTGGTAAGATTAGTTCCTAATTAAGAATGGGTTTCGAGTGTGGAAAGTAATGAGTGGGTCTCAAACAAATAGAATGAATATAGAGCAGGTTCGATCATAAGATGAATCACATTTGCGGGAGAAAAATCTTGTCAGAAATTTTTTTTTAAATAAATGCTTTAGGTGGTTCGAATACATTGCATCGTCAAATAAGTCAATGATAAGTGTTCCAATGGATTATTACTTTCGAGCAAAATCTGACGATGGTCCGTTATACAGCCGTTTTCCGGCAAGTTCCGTGTAGAACTTCGCCAATATCACAACCAACTTCTGACAAAAAGTTACAAGCTGACAGCCGGGATAGTAGTCGAGTAGCTAAGCCGACATCCCAGTTAATTTAAAATTAATGGTTTGTCATGTTTTTATCGTGACTGAAACTATTTAAACATGAATGTGAATCCAAAGTATCGGATAGAAGTATATTGCATTTGAGCATTGAATTGTTCACTTCAAGCTCATAAGTGATTTGAAGCTGGCCGAATACCACATTCGTTCAAACAGAAGCCCACCCTATATGTCCACTTTGAGCACAATTACCATAGAGTTATCAAAAATTTATTAACTGATAAAGTATTGATGATATTATGATAACCATTTTATCTGTTGACAATTTTTTGATATCTTTCACAGGAATCGATCTAATTAAACTCAAAAGGCACGTATGGGGTGGGGATATATAATAGTGTTGACAAATGGAAACAGAGTGTATTCTCCATTTTAACAATTTTCAGATTGAGATAGATAATTTGAAAACATAAAATAGAAAAGTTTGCATTGGGTATCTGAATAACCGGATAAAGCTCCTGATTCTTCAAAATGAAGTTTAGACATTATTA</canonical>
            <polymorphic>ACCTCGCACTGAAAGCAGGGACGGGTTGAGCAGGTGAAAAGAGCATGGAGTCTAGTAATGCAGGCTTAATTAAAGGCTTCCGATTAGAAACAGAACGCCATCAAAATATCGAGAAAATCTGATAATTGGTAAGATTAGTTCCTAATTAAGAATGGGTTTCGAGTGTGGAAAGTAATGAGTGGGTCTCAAACAAATAGAATGAATATAGAGCAGGTTCGATCATAAGATGAATCACATTTGCGGGAGAAAAATCTTGTCAGAAATTTTTTTTTAAATAAATGCTTTAGGTGGTTCGAATACATTGCATCGTCAAATAAGTCAATGATAAGTGTTCCAATGGATTATTACTTTCGAGCAAAATCTGACGATGGTCCGTTATACAGCCGTTTTCCGGCAAGTTCCGTGTAGAACTTCGCCAATATCACAACCAACTTCTGACAAAAAGTTACAAGCTGACAGCCGGGATAGTAGTCGAGTAGCTAAGCCGACATCCCAGTTARTTTAAAATTAATGGTTTGTCATGTTTTTATCGTGACTGAAACTATTTAAACATGAATGTGAATCCAAAGTATCGGATAGAAGTATATTGCATTTGAGCATTGAATTGTTCACTTCAAGCTCATAAGTGATTTGAAGCTGGCCGAATACCACATTCGTTCAAACAGAAGCCCACCCTATATGTCCACTTTGAGCACAATTACCATAGAGTTATCAAAAATTTATTAACTGATAAAGTATTGATGATATTATGATAACCATTTTATCTGTTGACAATTTTTTGATATCTTTCACAGGAATCGATCTAATTAAACTCAAAAGGCACGTATGGGGTGGGGATATATAATAGTGTTGACAAATGGAAACAGAGTGTATTCTCCATTTTAACAATTTTCAGATTGAGATAGATAATTTGAAAACATAAAATAGAAAAGTTTGCATTGGGTATCTGAATAACCGGATAAAGCTCCTGATTCTTCAAAATGAAGTTTAGACATTATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>226 177 125 118 84 76 75 66 38 6 5 4</canonical_bands>
                <polymorphic_bands>231 177 125 118 84 76 75 66 38 6 4</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>237 118 97 93 93 82 67 56 56 32 21 21 20 7</canonical_bands>
                <polymorphic_bands>244 118 97 93 93 82 67 56 56 32 21 21 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATAAGTGTTCCAATGGATTAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGGATTCACATTCATGTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TGATAAGTGTTCCAATGGATTATTACTTTCGAGCAAAATCTGACGATGGTCCGTTATACAGCCGTTTTCCGGCAAGTTCCGTGTAGAACTTCGCCAATATCACAACCAACTTCTGACAAAAAGTTACAAGCTGACAGCCGGGATAGTAGTCGAGTAGCTAAGCCGACATCCCAGTTAATTTAAAATTAATGGTTTGTCATGTTTTTATCGTGACTGAAACTATTTAAACATGAATGTGAATCCAAA</canonical_amplicon>
		<polymorphic_amplicon>TGATAAGTGTTCCAATGGATTATTACTTTCGAGCAAAATCTGACGATGGTCCGTTATACAGCCGTTTTCCGGCAAGTTCCGTGTAGAACTTCGCCAATATCACAACCAACTTCTGACAAAAAGTTACAAGCTGACAGCCGGGATAGTAGTCGAGTAGCTAAGCCGACATCCCAGTTARTTTAAAATTAATGGTTTGTCATGTTTTTATCGTGACTGAAACTATTTAAACATGAATGTGAATCCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12499</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>373267</contig_pos>
        <strand>+</strand>
        <context>GTTGAAAACR[A/G]AGTCAAGATG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCATAACTGTGTACATTGCTTTTCATTGAAGTAATTGTCGTTGAAAACG</left_flank>
        <right_flank>AGTCAAGATGCCGATGCTAATCGTTCTCACCGTGTTTGAACTTCTCGTTA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCCATTTTCTGAACCAAAATTTTATTTTTTAGCAATAATACGATCGCTGGTGTCAGTTTTTTATCCGGGAATAATACAAAAAATCCTAATAACTTCAAAAAAATCTTCGGATCATGAAGGAAAACGATGAAACAAAAATAGCAGCTCAATAGTGCTCGTGCGAATGAATGTGAGCTGCCACAGGGAACTTTCATAATCTCATGAGAATTTTTTCTGATAATCCCCATGTATTTAGACTTGTTGCTCACGAAAGGAATAACAAATTATCGAATTTTAGGATTCAGACATTTCGTCATCTGATTCTTTGTATTCAAAGCCTACTCTCGAGTTACAGTACTTTTGTCCCAGGCGTTCCCATTTCCTAATCTCAAAAACGTAACCTTACATTGACCATTCCAGTTTTTTCTCCTAGAAAAATATATTTTCCTGTACTTATTGTTCTGTTATTCCCATAACTGTGTACATTGCTTTTCATTGAAGTAATTGTCGTTGAAAACGGAGTCAAGATGCCGATGCTAATCGTTCTCACCGTGTTTGAACTTCTCGTTATCTCGACGGCTCTCATCTTTTGTGGAAAGGTATATATTTCACCTTAATATTGGATTTTTCCTTCAATTTCGTTTTTTTTAAAGAAAAAGAACAAGGCTCCAGTGAGTGTTCAGCAACCGCGTAAGTTTTAAAAAACGAAATAGGAGCTGACATAAAAGTTATGAAAATTTCAGCAGTGAGACCAGTAACTTCCACAATCTCTCCGATTGTTCCTCAGACTCCTTTACCAGAGGAGCCAGCGAAAAAACCAGAGGAGAAGAAGGAAGAAGTCGAGAAGAAAGAAAAATCAAAGAAGGAAGAAGAAAAGAAGGAGGAGAAAAAATCAGAGAAGAAAGAAGATAAGAAGTCGGATAAGAAGAGTGAGGATAAGAAGGCAGATGAAAAGAAATCAGAGAAAAAATCCGAGGAAAAGAAGGATGAAAAGAAGAGTGAGGAGAAGGAAAAGTCTGT</canonical>
            <polymorphic>TGCCATTTTCTGAACCAAAATTTTATTTTTTAGCAATAATACGATCGCTGGTGTCAGTTTTTTATCCGGGAATAATACAAAAAATCCTAATAACTTCAAAAAAATCTTCGGATCATGAAGGAAAACGATGAAACAAAAATAGCAGCTCAATAGTGCTCGTGCGAATGAATGTGAGCTGCCACAGGGAACTTTCATAATCTCATGAGAATTTTTTCTGATAATCCCCATGTATTTAGACTTGTTGCTCACGAAAGGAATAACAAATTATCGAATTTTAGGATTCAGACATTTCGTCATCTGATTCTTTGTATTCAAAGCCTACTCTCGAGTTACAGTACTTTTGTCCCAGGCGTTCCCATTTCCTAATCTCAAAAACGTAACCTTACATTGACCATTCCAGTTTTTTCTCCTAGAAAAATATATTTTCCTGTACTTATTGTTCTGTTATTCCCATAACTGTGTACATTGCTTTTCATTGAAGTAATTGTCGTTGAAAACGRAGTCAAGATGCCGATGCTAATCGTTCTCACCGTGTTTGAACTTCTCGTTATCTCGACGGCTCTCATCTTTTGTGGAAAGGTATATATTTCACCTTAATATTGGATTTTTCCTTCAATTTCGTTTTTTTTAAAGAAAAAGAACAAGGCTCCAGTGAGTGTTCAGCAACCGCGTAAGTTTTAAAAAACGAAATAGGAGCTGACATAAAAGTTATGAAAATTTCAGCAGTGAGACCAGTAACTTCCACAATCTCTCCGATTGTTCCTCAGACTCCTTTACCAGAGGAGCCAGCGAAAAAACCAGAGGAGAAGAAGGAAGAAGTCGAGAAGAAAGAAAAATCAAAGAAGGAAGAAGAAAAGAAGGAGGAGAAAAAATCAGAGAAGAAAGAAGATAAGAAGTCGGATAAGAAGAGTGAGGATAAGAAGGCAGATGAAAAGAAATCAGAGAAAAAATCCGAGGAAAAGAAGGATGAAAAGAAGAGTGAGGAGAAGGAAAAGTCTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>279 267 233 200 21</canonical_bands>
                <polymorphic_bands>467 279 233 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTAATCTCAAAAACGTAACCT</pcr_primer_p1>
		<pcr_primer_p2>GAAAAATCCAATATTAAGGTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCTAATCTCAAAAACGTAACCTTACATTGACCATTCCAGTTTTTTCTCCTAGAAAAATATATTTTCCTGTACTTATTGTTCTGTTATTCCCATAACTGTGTACATTGCTTTTCATTGAAGTAATTGTCGTTGAAAACGGAGTCAAGATGCCGATGCTAATCGTTCTCACCGTGTTTGAACTTCTCGTTATCTCGACGGCTCTCATCTTTTGTGGAAAGGTATATATTTCACCTTAATATTGGATTTTTC</canonical_amplicon>
		<polymorphic_amplicon>TCCTAATCTCAAAAACGTAACCTTACATTGACCATTCCAGTTTTTTCTCCTAGAAAAATATATTTTCCTGTACTTATTGTTCTGTTATTCCCATAACTGTGTACATTGCTTTTCATTGAAGTAATTGTCGTTGAAAACGRAGTCAAGATGCCGATGCTAATCGTTCTCACCGTGTTTGAACTTCTCGTTATCTCGACGGCTCTCATCTTTTGTGGAAAGGTATATATTTCACCTTAATATTGGATTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12500</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>373266</contig_pos>
        <strand>+</strand>
        <context>CGTTGAAAAC[A/G]RAGTCAAGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCCATAACTGTGTACATTGCTTTTCATTGAAGTAATTGTCGTTGAAAAC</left_flank>
        <right_flank>GAGTCAAGATGCCGATGCTAATCGTTCTCACCGTGTTTGAACTTCTCGTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGCCATTTTCTGAACCAAAATTTTATTTTTTAGCAATAATACGATCGCTGGTGTCAGTTTTTTATCCGGGAATAATACAAAAAATCCTAATAACTTCAAAAAAATCTTCGGATCATGAAGGAAAACGATGAAACAAAAATAGCAGCTCAATAGTGCTCGTGCGAATGAATGTGAGCTGCCACAGGGAACTTTCATAATCTCATGAGAATTTTTTCTGATAATCCCCATGTATTTAGACTTGTTGCTCACGAAAGGAATAACAAATTATCGAATTTTAGGATTCAGACATTTCGTCATCTGATTCTTTGTATTCAAAGCCTACTCTCGAGTTACAGTACTTTTGTCCCAGGCGTTCCCATTTCCTAATCTCAAAAACGTAACCTTACATTGACCATTCCAGTTTTTTCTCCTAGAAAAATATATTTTCCTGTACTTATTGTTCTGTTATTCCCATAACTGTGTACATTGCTTTTCATTGAAGTAATTGTCGTTGAAAACGGAGTCAAGATGCCGATGCTAATCGTTCTCACCGTGTTTGAACTTCTCGTTATCTCGACGGCTCTCATCTTTTGTGGAAAGGTATATATTTCACCTTAATATTGGATTTTTCCTTCAATTTCGTTTTTTTTAAAGAAAAAGAACAAGGCTCCAGTGAGTGTTCAGCAACCGCGTAAGTTTTAAAAAACGAAATAGGAGCTGACATAAAAGTTATGAAAATTTCAGCAGTGAGACCAGTAACTTCCACAATCTCTCCGATTGTTCCTCAGACTCCTTTACCAGAGGAGCCAGCGAAAAAACCAGAGGAGAAGAAGGAAGAAGTCGAGAAGAAAGAAAAATCAAAGAAGGAAGAAGAAAAGAAGGAGGAGAAAAAATCAGAGAAGAAAGAAGATAAGAAGTCGGATAAGAAGAGTGAGGATAAGAAGGCAGATGAAAAGAAATCAGAGAAAAAATCCGAGGAAAAGAAGGATGAAAAGAAGAGTGAGGAGAAGGAAAAGTCTG</canonical>
            <polymorphic>GTGCCATTTTCTGAACCAAAATTTTATTTTTTAGCAATAATACGATCGCTGGTGTCAGTTTTTTATCCGGGAATAATACAAAAAATCCTAATAACTTCAAAAAAATCTTCGGATCATGAAGGAAAACGATGAAACAAAAATAGCAGCTCAATAGTGCTCGTGCGAATGAATGTGAGCTGCCACAGGGAACTTTCATAATCTCATGAGAATTTTTTCTGATAATCCCCATGTATTTAGACTTGTTGCTCACGAAAGGAATAACAAATTATCGAATTTTAGGATTCAGACATTTCGTCATCTGATTCTTTGTATTCAAAGCCTACTCTCGAGTTACAGTACTTTTGTCCCAGGCGTTCCCATTTCCTAATCTCAAAAACGTAACCTTACATTGACCATTCCAGTTTTTTCTCCTAGAAAAATATATTTTCCTGTACTTATTGTTCTGTTATTCCCATAACTGTGTACATTGCTTTTCATTGAAGTAATTGTCGTTGAAAACRGAGTCAAGATGCCGATGCTAATCGTTCTCACCGTGTTTGAACTTCTCGTTATCTCGACGGCTCTCATCTTTTGTGGAAAGGTATATATTTCACCTTAATATTGGATTTTTCCTTCAATTTCGTTTTTTTTAAAGAAAAAGAACAAGGCTCCAGTGAGTGTTCAGCAACCGCGTAAGTTTTAAAAAACGAAATAGGAGCTGACATAAAAGTTATGAAAATTTCAGCAGTGAGACCAGTAACTTCCACAATCTCTCCGATTGTTCCTCAGACTCCTTTACCAGAGGAGCCAGCGAAAAAACCAGAGGAGAAGAAGGAAGAAGTCGAGAAGAAAGAAAAATCAAAGAAGGAAGAAGAAAAGAAGGAGGAGAAAAAATCAGAGAAGAAAGAAGATAAGAAGTCGGATAAGAAGAGTGAGGATAAGAAGGCAGATGAAAAGAAATCAGAGAAAAAATCCGAGGAAAAGAAGGATGAAAAGAAGAGTGAGGAGAAGGAAAAGTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTAATCTCAAAAACGTAACCT</pcr_primer_p1>
		<pcr_primer_p2>GAAAAATCCAATATTAAGGTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCTAATCTCAAAAACGTAACCTTACATTGACCATTCCAGTTTTTTCTCCTAGAAAAATATATTTTCCTGTACTTATTGTTCTGTTATTCCCATAACTGTGTACATTGCTTTTCATTGAAGTAATTGTCGTTGAAAACGGAGTCAAGATGCCGATGCTAATCGTTCTCACCGTGTTTGAACTTCTCGTTATCTCGACGGCTCTCATCTTTTGTGGAAAGGTATATATTTCACCTTAATATTGGATTTTTC</canonical_amplicon>
		<polymorphic_amplicon>TCCTAATCTCAAAAACGTAACCTTACATTGACCATTCCAGTTTTTTCTCCTAGAAAAATATATTTTCCTGTACTTATTGTTCTGTTATTCCCATAACTGTGTACATTGCTTTTCATTGAAGTAATTGTCGTTGAAAACRGAGTCAAGATGCCGATGCTAATCGTTCTCACCGTGTTTGAACTTCTCGTTATCTCGACGGCTCTCATCTTTTGTGGAAAGGTATATATTTCACCTTAATATTGGATTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12501</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>395572</contig_pos>
        <strand>+</strand>
        <context>GTGTATGCAT[A/T]TTAAATCTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCCCAAATGGATGTTCAGGTGAATGTGTGAACGTTGATTGTGTATGCAT</left_flank>
        <right_flank>TTAAATCTCTCGCGATTTGAACTTGTTTAATATTTTCGTTCGAAATACAT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACGCTTTATGGACCACTAAAACACTTGTGCCCTTTTCACTTTTTGTCGCTTTTTCATGACTTAGATCGGCGGTTGGTGCTCCCATAAGAACAGCGAACAAGAAAATAATTTGGCAATTTCAAAGGAGAATTCTTTTGTGGGCAAAGATCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAAAATTAGGTCGAACATGAAAATGGAAATAAGTAGAATAAGAAGAAAAAGAGATACTTTCTGAGTGACGTACTAATATAGAAGTATCAGAATGGATTTAGAGGAGATAAGTTAAATAAGAAGAGAACACCGTATTACGATGTGAATCTGCATATTCTACGCATGTTTTCAGTTGTAAGAATGTTAGTTCCAAGTGTGTGACAACTTATTTATGGATCCCAAATGGATGTTCAGGTGAATGTGTGAACGTTGATTGTGTATGCATTTTAAATCTCTCGCGATTTGAACTTGTTTAATATTTTCGTTCGAAATACATATTTATAGATATAAATTCTAATACTTCTGTTGCTTTGGGAATATGGGAATTCAGATTTAAAGGATAATTGTTTGTTACTGGAAGAGCTTCCTTTTAAAAACCTTAAATTTATTCAATTTCGCCAGAGTTGCAGAGATGTGCGGAATGTTTTTTCGAGAAACGGAATCTAGAATACGGAATCAGGAATAAAATAATTTTCTCGAAATATGGAATCTAGACAACATTTTATTCATTGGAAAGCACGGAAGCCGGAAAACGGAATCCAGAATTCGGAATAAATATATTTTTCGCGGAATCCGGAATCCCCACAGCTCTGCTCCTTAGCCATATCCAACTTGCCTACTTCCCTATCAGCCATACTATCAGTCATACTGATCGAGATAAACTTTTCTTCTTGGATTACGGTATCTAGAAAGTCCGAGAGCTATACTAAATTTATGTGGTTTTTTT</canonical>
            <polymorphic>AAACGCTTTATGGACCACTAAAACACTTGTGCCCTTTTCACTTTTTGTCGCTTTTTCATGACTTAGATCGGCGGTTGGTGCTCCCATAAGAACAGCGAACAAGAAAATAATTTGGCAATTTCAAAGGAGAATTCTTTTGTGGGCAAAGATCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAAAATTAGGTCGAACATGAAAATGGAAATAAGTAGAATAAGAAGAAAAAGAGATACTTTCTGAGTGACGTACTAATATAGAAGTATCAGAATGGATTTAGAGGAGATAAGTTAAATAAGAAGAGAACACCGTATTACGATGTGAATCTGCATATTCTACGCATGTTTTCAGTTGTAAGAATGTTAGTTCCAAGTGTGTGACAACTTATTTATGGATCCCAAATGGATGTTCAGGTGAATGTGTGAACGTTGATTGTGTATGCATWTTAAATCTCTCGCGATTTGAACTTGTTTAATATTTTCGTTCGAAATACATATTTATAGATATAAATTCTAATACTTCTGTTGCTTTGGGAATATGGGAATTCAGATTTAAAGGATAATTGTTTGTTACTGGAAGAGCTTCCTTTTAAAAACCTTAAATTTATTCAATTTCGCCAGAGTTGCAGAGATGTGCGGAATGTTTTTTCGAGAAACGGAATCTAGAATACGGAATCAGGAATAAAATAATTTTCTCGAAATATGGAATCTAGACAACATTTTATTCATTGGAAAGCACGGAAGCCGGAAAACGGAATCCAGAATTCGGAATAAATATATTTTTCGCGGAATCCGGAATCCCCACAGCTCTGCTCCTTAGCCATATCCAACTTGCCTACTTCCCTATCAGCCATACTATCAGTCATACTGATCGAGATAAACTTTTCTTCTTGGATTACGGTATCTAGAAAGTCCGAGAGCTATACTAAATTTATGTGGTTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 355 106 37</canonical_bands>
                <polymorphic_bands>608 355 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATTCTACGCATGTTTTCAGTT</pcr_primer_p1>
		<pcr_primer_p2>CTTCCAGTAACAAACAATTATCC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATATTCTACGCATGTTTTCAGTTGTAAGAATGTTAGTTCCAAGTGTGTGACAACTTATTTATGGATCCCAAATGGATGTTCAGGTGAATGTGTGAACGTTGATTGTGTATGCATTTTAAATCTCTCGCGATTTGAACTTGTTTAATATTTTCGTTCGAAATACATATTTATAGATATAAATTCTAATACTTCTGTTGCTTTGGGAATATGGGAATTCAGATTTAAAGGATAATTGTTTGTTACTGGAAG</canonical_amplicon>
		<polymorphic_amplicon>ATATTCTACGCATGTTTTCAGTTGTAAGAATGTTAGTTCCAAGTGTGTGACAACTTATTTATGGATCCCAAATGGATGTTCAGGTGAATGTGTGAACGTTGATTGTGTATGCATWTTAAATCTCTCGCGATTTGAACTTGTTTAATATTTTCGTTCGAAATACATATTTATAGATATAAATTCTAATACTTCTGTTGCTTTGGGAATATGGGAATTCAGATTTAAAGGATAATTGTTTGTTACTGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12502</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>395583</contig_pos>
        <strand>+</strand>
        <context>TTAAATCTCT[C/T]GCGATTTGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGTTCAGGTGAATGTGTGAACGTTGATTGTGTATGCATTTTAAATCTCT</left_flank>
        <right_flank>GCGATTTGAACTTGTTTAATATTTTCGTTCGAAATACATATTTATAGATA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGACCACTAAAACACTTGTGCCCTTTTCACTTTTTGTCGCTTTTTCATGACTTAGATCGGCGGTTGGTGCTCCCATAAGAACAGCGAACAAGAAAATAATTTGGCAATTTCAAAGGAGAATTCTTTTGTGGGCAAAGATCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAAAATTAGGTCGAACATGAAAATGGAAATAAGTAGAATAAGAAGAAAAAGAGATACTTTCTGAGTGACGTACTAATATAGAAGTATCAGAATGGATTTAGAGGAGATAAGTTAAATAAGAAGAGAACACCGTATTACGATGTGAATCTGCATATTCTACGCATGTTTTCAGTTGTAAGAATGTTAGTTCCAAGTGTGTGACAACTTATTTATGGATCCCAAATGGATGTTCAGGTGAATGTGTGAACGTTGATTGTGTATGCATTTTAAATCTCTCGCGATTTGAACTTGTTTAATATTTTCGTTCGAAATACATATTTATAGATATAAATTCTAATACTTCTGTTGCTTTGGGAATATGGGAATTCAGATTTAAAGGATAATTGTTTGTTACTGGAAGAGCTTCCTTTTAAAAACCTTAAATTTATTCAATTTCGCCAGAGTTGCAGAGATGTGCGGAATGTTTTTTCGAGAAACGGAATCTAGAATACGGAATCAGGAATAAAATAATTTTCTCGAAATATGGAATCTAGACAACATTTTATTCATTGGAAAGCACGGAAGCCGGAAAACGGAATCCAGAATTCGGAATAAATATATTTTTCGCGGAATCCGGAATCCCCACAGCTCTGCTCCTTAGCCATATCCAACTTGCCTACTTCCCTATCAGCCATACTATCAGTCATACTGATCGAGATAAACTTTTCTTCTTGGATTACGGTATCTAGAAAGTCCGAGAGCTATACTAAATTTATGTGGTTTTTTTATTCTCATGCT</canonical>
            <polymorphic>GGACCACTAAAACACTTGTGCCCTTTTCACTTTTTGTCGCTTTTTCATGACTTAGATCGGCGGTTGGTGCTCCCATAAGAACAGCGAACAAGAAAATAATTTGGCAATTTCAAAGGAGAATTCTTTTGTGGGCAAAGATCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAAAATTAGGTCGAACATGAAAATGGAAATAAGTAGAATAAGAAGAAAAAGAGATACTTTCTGAGTGACGTACTAATATAGAAGTATCAGAATGGATTTAGAGGAGATAAGTTAAATAAGAAGAGAACACCGTATTACGATGTGAATCTGCATATTCTACGCATGTTTTCAGTTGTAAGAATGTTAGTTCCAAGTGTGTGACAACTTATTTATGGATCCCAAATGGATGTTCAGGTGAATGTGTGAACGTTGATTGTGTATGCATTTTAAATCTCTYGCGATTTGAACTTGTTTAATATTTTCGTTCGAAATACATATTTATAGATATAAATTCTAATACTTCTGTTGCTTTGGGAATATGGGAATTCAGATTTAAAGGATAATTGTTTGTTACTGGAAGAGCTTCCTTTTAAAAACCTTAAATTTATTCAATTTCGCCAGAGTTGCAGAGATGTGCGGAATGTTTTTTCGAGAAACGGAATCTAGAATACGGAATCAGGAATAAAATAATTTTCTCGAAATATGGAATCTAGACAACATTTTATTCATTGGAAAGCACGGAAGCCGGAAAACGGAATCCAGAATTCGGAATAAATATATTTTTCGCGGAATCCGGAATCCCCACAGCTCTGCTCCTTAGCCATATCCAACTTGCCTACTTCCCTATCAGCCATACTATCAGTCATACTGATCGAGATAAACTTTTCTTCTTGGATTACGGTATCTAGAAAGTCCGAGAGCTATACTAAATTTATGTGGTTTTTTTATTCTCATGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 328 171</canonical_bands>
                <polymorphic_bands>829 171</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGCGA</site>
                <isoschizomers>
                    <enzyme>Bsp68I</enzyme>
                    <enzyme>NruI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>454 193 80 52 49 46 34 32 18 15 14 13</canonical_bands>
                <polymorphic_bands>647 80 52 49 46 34 32 18 15 14 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATTCTACGCATGTTTTCAGTT</pcr_primer_p1>
		<pcr_primer_p2>CTTCCAGTAACAAACAATTATCC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATATTCTACGCATGTTTTCAGTTGTAAGAATGTTAGTTCCAAGTGTGTGACAACTTATTTATGGATCCCAAATGGATGTTCAGGTGAATGTGTGAACGTTGATTGTGTATGCATTTTAAATCTCTCGCGATTTGAACTTGTTTAATATTTTCGTTCGAAATACATATTTATAGATATAAATTCTAATACTTCTGTTGCTTTGGGAATATGGGAATTCAGATTTAAAGGATAATTGTTTGTTACTGGAAG</canonical_amplicon>
		<polymorphic_amplicon>ATATTCTACGCATGTTTTCAGTTGTAAGAATGTTAGTTCCAAGTGTGTGACAACTTATTTATGGATCCCAAATGGATGTTCAGGTGAATGTGTGAACGTTGATTGTGTATGCATTTTAAATCTCTYGCGATTTGAACTTGTTTAATATTTTCGTTCGAAATACATATTTATAGATATAAATTCTAATACTTCTGTTGCTTTGGGAATATGGGAATTCAGATTTAAAGGATAATTGTTTGTTACTGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12503</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>400103</contig_pos>
        <strand>+</strand>
        <context>GGTATTGCTT[G/T]ATTTTTCCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATGGAACTGCGTTCACTCCGTAAGCAGTGTCAGCTACTCGGTATTGCTT</left_flank>
        <right_flank>ATTTTTCCATCGTCGGCTAGCGAGAAGATCGTGTCACCGCGTGGTGAGAA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTGGAGATGGCATTGACCATGAATGAATCAGGGAGTAGTTGGTAGTTCGGAAAGCGTTCACTCTTCTGTCAATTCCAGCGGTCAGAAGACATGTCGAGTTTGTGGCAAGACGAAGAGAAGTAACTGTTTTGTAATGAGCTTGAAGAACAGTTAGTGGTCTTCCAGTTGTGGTATCCCATATTCTGAAAAGCAAATGACCTTGAAGCAATTTATTACCGGAAAACTAACTTAACAATAGGCCCAGCAGCAGTGGCAATAAGTTGTTCTCCTGGGAGGAATAGAACTGACTCCACTGGGTGCTCACAGTTCAACTCCATAGTTTTTTCTTTGCTTCGAATATCCCATAGCCTCACTTTATGATCATAACCCCCTGTTAATACAATATGGTCATTTAGAGACGACACCGCTCCACATCTTATTGCGTCGTCGTGTGCTTGAATTTCGATCAATGGAACTGCGTTCACTCCGTAAGCAGTGTCAGCTACTCGGTATTGCTTTATTTTTCCATCGTCGGCTAGCGAGAAGATCGTGTCACCGCGTGGTGAGAAGTGTACACTTTTGACTGTTGATTGAGATGCTTGCATGACGCGAAGTGCAACTTTGCTAGATCCAGTTGTCTTCTCTACATCGAAAATCCTTACTTTTCCTTCATCTCCTCCAATGGCTGCAAAAGTGAAAATGAAGTCTCAATACTGACCACAGTCTATTACCCAGCAGTCTTCCGTCATGACGAAAATCAATTGAGCATACACCTTTCTTGAATCTACTGAACAAATTGAGTGGCTCACAAACCACTGTGTCATAGAGTGTCAACCGAACGCTGCTGGTCGTTGCCACGTGGAACGGTTTTTTGGGTGAAATACGAACTGAGCTAACAACTGAGGGCTCTTGGAATACGGTGAGTTGTTGCATTCGTTTCCAGTAAACCACATCCTCGTCAAGCAATATCGTATCCTGCTTTCTGGAGAGAAATTTCTCAGCTGGAAGATACGGTTGAG</canonical>
            <polymorphic>GACTGGAGATGGCATTGACCATGAATGAATCAGGGAGTAGTTGGTAGTTCGGAAAGCGTTCACTCTTCTGTCAATTCCAGCGGTCAGAAGACATGTCGAGTTTGTGGCAAGACGAAGAGAAGTAACTGTTTTGTAATGAGCTTGAAGAACAGTTAGTGGTCTTCCAGTTGTGGTATCCCATATTCTGAAAAGCAAATGACCTTGAAGCAATTTATTACCGGAAAACTAACTTAACAATAGGCCCAGCAGCAGTGGCAATAAGTTGTTCTCCTGGGAGGAATAGAACTGACTCCACTGGGTGCTCACAGTTCAACTCCATAGTTTTTTCTTTGCTTCGAATATCCCATAGCCTCACTTTATGATCATAACCCCCTGTTAATACAATATGGTCATTTAGAGACGACACCGCTCCACATCTTATTGCGTCGTCGTGTGCTTGAATTTCGATCAATGGAACTGCGTTCACTCCGTAAGCAGTGTCAGCTACTCGGTATTGCTTKATTTTTCCATCGTCGGCTAGCGAGAAGATCGTGTCACCGCGTGGTGAGAAGTGTACACTTTTGACTGTTGATTGAGATGCTTGCATGACGCGAAGTGCAACTTTGCTAGATCCAGTTGTCTTCTCTACATCGAAAATCCTTACTTTTCCTTCATCTCCTCCAATGGCTGCAAAAGTGAAAATGAAGTCTCAATACTGACCACAGTCTATTACCCAGCAGTCTTCCGTCATGACGAAAATCAATTGAGCATACACCTTTCTTGAATCTACTGAACAAATTGAGTGGCTCACAAACCACTGTGTCATAGAGTGTCAACCGAACGCTGCTGGTCGTTGCCACGTGGAACGGTTTTTTGGGTGAAATACGAACTGAGCTAACAACTGAGGGCTCTTGGAATACGGTGAGTTGTTGCATTCGTTTCCAGTAAACCACATCCTCGTCAAGCAATATCGTATCCTGCTTTCTGGAGAGAAATTTCTCAGCTGGAAGATACGGTTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATGGTCATTTAGAGACGACAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTCGATGTAGAGAAGACAACT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ATATGGTCATTTAGAGACGACACCGCTCCACATCTTATTGCGTCGTCGTGTGCTTGAATTTCGATCAATGGAACTGCGTTCACTCCGTAAGCAGTGTCAGCTACTCGGTATTGCTTTATTTTTCCATCGTCGGCTAGCGAGAAGATCGTGTCACCGCGTGGTGAGAAGTGTACACTTTTGACTGTTGATTGAGATGCTTGCATGACGCGAAGTGCAACTTTGCTAGATCCAGTTGTCTTCTCTACATCGAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATATGGTCATTTAGAGACGACACCGCTCCACATCTTATTGCGTCGTCGTGTGCTTGAATTTCGATCAATGGAACTGCGTTCACTCCGTAAGCAGTGTCAGCTACTCGGTATTGCTTKATTTTTCCATCGTCGGCTAGCGAGAAGATCGTGTCACCGCGTGGTGAGAAGTGTACACTTTTGACTGTTGATTGAGATGCTTGCATGACGCGAAGTGCAACTTTGCTAGATCCAGTTGTCTTCTCTACATCGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12504</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>432269</contig_pos>
        <strand></strand>
        <context>AACCCATTTC[G/C]TATTCCGTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TAAAATGGTCCAGGAATTACATAGAAAAAAAAGGAAAAATAACCCATTTC</left_flank>
        <right_flank>TATTCCGTCTTCAAATATCTCTTTCCTAGAATTGAGAAAAACCATCTCTT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTGTTGTGTGTAGAAGAAAAAATAATAAAATTTTCAAGCATTTTTTGCATCTGTAGGTCTTGTTTTTGCTGGAAAGAGGAATTTCATTTTCTCTTAAGTTTTGCTATTTGTGTTTATTTATGTAGATCTGGTGCAAACAAATCTGAAGGTCCCACAAGGACAACTACAGTAATCTAAAAAAAGGTTGTGTTTCAGGATTTCTTTTCTCGTTTTTTTACTGTTTTCAGTCAATTTTTTTGTGTTCTTTTTTCTAAACAAATCGGGAAATGAAAATTGACTAAAAATTGACTAAAAACACTCAAAAATCGAGATAATTAATCCGGAAAAAAATGTTTAGATTACGGTAGTTGTCGTTGTGGGACCTTCAGTTTTTTTCATAGTTCCGAATAATTCGTACCAGTATAATATCTATAATAACATTTATATTTTCTGCGCGAAATATGAATATAAAATGGTCCAGGAATTACATAGAAAAAAAAGGAAAAATAACCCATTTCGTATTCCGTCTTCAAATATCTCTTTCCTAGAATTGAGAAAAACCATCTCTTTCCTAGAATTGAGAAAACCCGCTTGTTAGAAAAAAAGGTTTTCCAAAAGATCGGAAAAGTTTGAAATCATTCCTGGAGTAAATAACGAAGTGCAAGACAAACAAAGATGAGTTCAATCATAAAATAATAGAGTAATTCTACACCCTTCTCTCCCGAAAACGTCTTGAGAAAACTGAGTGAGAGAGAGCAGGTCAACAAGTCACATCAGAAACGAAAAAAAGTGGTTTTATATGCAAATCGAAAACGGACGTAGTGGGAGGACGTTGGCCTGAGCCCCCTTCCTTTCGTGAGCAACTAAATCAGATATCCGTGCGAAAGTTATTATGACTCTTGCTCTCCTTTATGCCATAACAAGCAATCCGTTTCTTGACAAAAATACTACGACTACTTCTCCTGTTTCTATGCATTCGACCCCTTTTTTCCTCTCTAACGAAACTGGAAAATTGGTGA</canonical>
            <polymorphic>AAGTGTTGTGTGTAGAAGAAAAAATAATAAAATTTTCAAGCATTTTTTGCATCTGTAGGTCTTGTTTTTGCTGGAAAGAGGAATTTCATTTTCTCTTAAGTTTTGCTATTTGTGTTTATTTATGTAGATCTGGTGCAAACAAATCTGAAGGTCCCACAAGGACAACTACAGTAATCTAAAAAAAGGTTGTGTTTCAGGATTTCTTTTCTCGTTTTTTTACTGTTTTCAGTCAATTTTTTTGTGTTCTTTTTTCTAAACAAATCGGGAAATGAAAATTGACTAAAAATTGACTAAAAACACTCAAAAATCGAGATAATTAATCCGGAAAAAAATGTTTAGATTACGGTAGTTGTCGTTGTGGGACCTTCAGTTTTTTTCATAGTTCCGAATAATTCGTACCAGTATAATATCTATAATAACATTTATATTTTCTGCGCGAAATATGAATATAAAATGGTCCAGGAATTACATAGAAAAAAAAGGAAAAATAACCCATTTCSTATTCCGTCTTCAAATATCTCTTTCCTAGAATTGAGAAAAACCATCTCTTTCCTAGAATTGAGAAAACCCGCTTGTTAGAAAAAAAGGTTTTCCAAAAGATCGGAAAAGTTTGAAATCATTCCTGGAGTAAATAACGAAGTGCAAGACAAACAAAGATGAGTTCAATCATAAAATAATAGAGTAATTCTACACCCTTCTCTCCCGAAAACGTCTTGAGAAAACTGAGTGAGAGAGAGCAGGTCAACAAGTCACATCAGAAACGAAAAAAAGTGGTTTTATATGCAAATCGAAAACGGACGTAGTGGGAGGACGTTGGCCTGAGCCCCCTTCCTTTCGTGAGCAACTAAATCAGATATCCGTGCGAAAGTTATTATGACTCTTGCTCTCCTTTATGCCATAACAAGCAATCCGTTTCTTGACAAAAATACTACGACTACTTCTCCTGTTTCTATGCATTCGACCCCTTTTTTCCTCTCTAACGAAACTGGAAAATTGGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGCGAAATATGAATATAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GATTGAACTCATCTTTGTTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>GCGCGAAATATGAATATAAAATGGTCCAGGAATTACATAGAAAAAAAAGGAAAAATAACCCATTTCGTATTCCGTCTTCAAATATCTCTTTCCTAGAATTGAGAAAAACCATCTCTTTCCTAGAATTGAGAAAACCCGCTTGTTAGAAAAAAAGGTTTTCCAAAAGATCGGAAAAGTTTGAAATCATTCCTGGAGTAAATAACGAAGTGCAAGACAAACAAAGATGAGTTCAATC</canonical_amplicon>
		<polymorphic_amplicon>GCGCGAAATATGAATATAAAATGGTCCAGGAATTACATAGAAAAAAAAGGAAAAATAACCCATTTCSTATTCCGTCTTCAAATATCTCTTTCCTAGAATTGAGAAAAACCATCTCTTTCCTAGAATTGAGAAAACCCGCTTGTTAGAAAAAAAGGTTTTCCAAAAGATCGGAAAAGTTTGAAATCATTCCTGGAGTAAATAACGAAGTGCAAGACAAACAAAGATGAGTTCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12505</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>432341</contig_pos>
        <strand>+</strand>
        <context>AGAAAACCCG[C/T]TTGTTAGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCCTAGAATTGAGAAAAACCATCTCTTTCCTAGAATTGAGAAAACCCG</left_flank>
        <right_flank>TTGTTAGAAAAAAAGGTTTTCCAAAAGATCGGAAAAGTTTGAAATCATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAAAGAGGAATTTCATTTTCTCTTAAGTTTTGCTATTTGTGTTTATTTATGTAGATCTGGTGCAAACAAATCTGAAGGTCCCACAAGGACAACTACAGTAATCTAAAAAAAGGTTGTGTTTCAGGATTTCTTTTCTCGTTTTTTTACTGTTTTCAGTCAATTTTTTTGTGTTCTTTTTTCTAAACAAATCGGGAAATGAAAATTGACTAAAAATTGACTAAAAACACTCAAAAATCGAGATAATTAATCCGGAAAAAAATGTTTAGATTACGGTAGTTGTCGTTGTGGGACCTTCAGTTTTTTTCATAGTTCCGAATAATTCGTACCAGTATAATATCTATAATAACATTTATATTTTCTGCGCGAAATATGAATATAAAATGGTCCAGGAATTACATAGAAAAAAAAGGAAAAATAACCCATTTCGTATTCCGTCTTCAAATATCTCTTTCCTAGAATTGAGAAAAACCATCTCTTTCCTAGAATTGAGAAAACCCGCTTGTTAGAAAAAAAGGTTTTCCAAAAGATCGGAAAAGTTTGAAATCATTCCTGGAGTAAATAACGAAGTGCAAGACAAACAAAGATGAGTTCAATCATAAAATAATAGAGTAATTCTACACCCTTCTCTCCCGAAAACGTCTTGAGAAAACTGAGTGAGAGAGAGCAGGTCAACAAGTCACATCAGAAACGAAAAAAAGTGGTTTTATATGCAAATCGAAAACGGACGTAGTGGGAGGACGTTGGCCTGAGCCCCCTTCCTTTCGTGAGCAACTAAATCAGATATCCGTGCGAAAGTTATTATGACTCTTGCTCTCCTTTATGCCATAACAAGCAATCCGTTTCTTGACAAAAATACTACGACTACTTCTCCTGTTTCTATGCATTCGACCCCTTTTTTCCTCTCTAACGAAACTGGAAAATTGGTGACCAAAAACAAAAGAAGTGTGTGATGTATTACTGACACATACACTCCCTATTGACTTGCTGTCCCTCCGAACC</canonical>
            <polymorphic>GGAAAGAGGAATTTCATTTTCTCTTAAGTTTTGCTATTTGTGTTTATTTATGTAGATCTGGTGCAAACAAATCTGAAGGTCCCACAAGGACAACTACAGTAATCTAAAAAAAGGTTGTGTTTCAGGATTTCTTTTCTCGTTTTTTTACTGTTTTCAGTCAATTTTTTTGTGTTCTTTTTTCTAAACAAATCGGGAAATGAAAATTGACTAAAAATTGACTAAAAACACTCAAAAATCGAGATAATTAATCCGGAAAAAAATGTTTAGATTACGGTAGTTGTCGTTGTGGGACCTTCAGTTTTTTTCATAGTTCCGAATAATTCGTACCAGTATAATATCTATAATAACATTTATATTTTCTGCGCGAAATATGAATATAAAATGGTCCAGGAATTACATAGAAAAAAAAGGAAAAATAACCCATTTCGTATTCCGTCTTCAAATATCTCTTTCCTAGAATTGAGAAAAACCATCTCTTTCCTAGAATTGAGAAAACCCGYTTGTTAGAAAAAAAGGTTTTCCAAAAGATCGGAAAAGTTTGAAATCATTCCTGGAGTAAATAACGAAGTGCAAGACAAACAAAGATGAGTTCAATCATAAAATAATAGAGTAATTCTACACCCTTCTCTCCCGAAAACGTCTTGAGAAAACTGAGTGAGAGAGAGCAGGTCAACAAGTCACATCAGAAACGAAAAAAAGTGGTTTTATATGCAAATCGAAAACGGACGTAGTGGGAGGACGTTGGCCTGAGCCCCCTTCCTTTCGTGAGCAACTAAATCAGATATCCGTGCGAAAGTTATTATGACTCTTGCTCTCCTTTATGCCATAACAAGCAATCCGTTTCTTGACAAAAATACTACGACTACTTCTCCTGTTTCTATGCATTCGACCCCTTTTTTCCTCTCTAACGAAACTGGAAAATTGGTGACCAAAAACAAAAGAAGTGTGTGATGTATTACTGACACATACACTCCCTATTGACTTGCTGTCCCTCCGAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTTTCCTAGAATTGAGAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCGTTTCTGATGTGACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTTTCCTAGAATTGAGAAAAACCATCTCTTTCCTAGAATTGAGAAAACCCGCTTGTTAGAAAAAAAGGTTTTCCAAAAGATCGGAAAAGTTTGAAATCATTCCTGGAGTAAATAACGAAGTGCAAGACAAACAAAGATGAGTTCAATCATAAAATAATAGAGTAATTCTACACCCTTCTCTCCCGAAAACGTCTTGAGAAAACTGAGTGAGAGAGAGCAGGTCAACAAGTCACATCAGAAACGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CTCTTTCCTAGAATTGAGAAAAACCATCTCTTTCCTAGAATTGAGAAAACCCGYTTGTTAGAAAAAAAGGTTTTCCAAAAGATCGGAAAAGTTTGAAATCATTCCTGGAGTAAATAACGAAGTGCAAGACAAACAAAGATGAGTTCAATCATAAAATAATAGAGTAATTCTACACCCTTCTCTCCCGAAAACGTCTTGAGAAAACTGAGTGAGAGAGAGCAGGTCAACAAGTCACATCAGAAACGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12506</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>492643</contig_pos>
        <strand>+</strand>
        <context>TCTAATTTCT[A/T]TTTTTCTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAATCCCCAGTCAATTTTCACCAAACTAAATAGCCGACTTCTAATTTCT</left_flank>
        <right_flank>TTTTTCTTCTGTGAATATTACGCCTTCTCGGGTAATTGAATGGCTACGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGAGAAAGGTGGTGCCAACGTCATGTTGTTATCTCTCACTGCTGGCGGTGTTGGACTGAATTTATGTGGTGGCAACCATCTAATCATGGTTGATTTGCATTGGAATCCCGCACTAGAACAACAAGCTTTTGACAGAATTTATCGAATGGGACAGAAGAAACCAGTCTTTATTCACAGGTATTTATTATGACCCCAATATAAAAAGTAGGCAATAAGTTTTTTTTTTTTAGATTAGTCACTAATAACACGATTGAACAACGAGTCGCAGAATTACAAAAATCAAAACTCCAACTTGCCTCGTCGATTCTCGATGGAACTGCTACGCGAAAGATGAACAAGTTGACAACATCTGACATCAAAATGCTTTTCGATTTGTGAATAATTCAATTTTTTCGTTATTTTCACCCTTGTAGTATTTAGCTTTATAGAAATCACCCGCCCTCTTGTCAAATCCCCAGTCAATTTTCACCAAACTAAATAGCCGACTTCTAATTTCTATTTTTCTTCTGTGAATATTACGCCTTCTCGGGTAATTGAATGGCTACGTTTCAATAAGAGTAATTTTATTAGTTTGTAAGCAGTTGTACAATAAATATACAGAACCAATAAACGGACAGTGTAGCACGGGGACTTCAAACTACAAAAATTCCGCCTTCTGGATCTATAAGTGGATTCTAATGATCGAAAATTAAAACATTTCAAGAAGAAAATTTTCGATAATTCCCTCTCAATTTTTGCCGGATAATTTATTTCAGGGATCTCATACTTCCTAATTTTCAGTTATATTTTGAACTGTGAGAAACTGAAAAATAGACTGATCAGTGATCACAGTTCTTCTTGTCTTTTCCATTCTCCACCTTAGACCACGGGTCTCTATGATAAATACCTGAAAAAATAAATGATGTTTTATTTTTTGTCGAAAGTTCCTTATATAATAAAGGGAAGGTTGGAAAGATGAAGGCGATTGTGTCAAAACATTCATAAAGAACACCGTCATG</canonical>
            <polymorphic>CAAGAGAAAGGTGGTGCCAACGTCATGTTGTTATCTCTCACTGCTGGCGGTGTTGGACTGAATTTATGTGGTGGCAACCATCTAATCATGGTTGATTTGCATTGGAATCCCGCACTAGAACAACAAGCTTTTGACAGAATTTATCGAATGGGACAGAAGAAACCAGTCTTTATTCACAGGTATTTATTATGACCCCAATATAAAAAGTAGGCAATAAGTTTTTTTTTTTTAGATTAGTCACTAATAACACGATTGAACAACGAGTCGCAGAATTACAAAAATCAAAACTCCAACTTGCCTCGTCGATTCTCGATGGAACTGCTACGCGAAAGATGAACAAGTTGACAACATCTGACATCAAAATGCTTTTCGATTTGTGAATAATTCAATTTTTTCGTTATTTTCACCCTTGTAGTATTTAGCTTTATAGAAATCACCCGCCCTCTTGTCAAATCCCCAGTCAATTTTCACCAAACTAAATAGCCGACTTCTAATTTCTWTTTTTCTTCTGTGAATATTACGCCTTCTCGGGTAATTGAATGGCTACGTTTCAATAAGAGTAATTTTATTAGTTTGTAAGCAGTTGTACAATAAATATACAGAACCAATAAACGGACAGTGTAGCACGGGGACTTCAAACTACAAAAATTCCGCCTTCTGGATCTATAAGTGGATTCTAATGATCGAAAATTAAAACATTTCAAGAAGAAAATTTTCGATAATTCCCTCTCAATTTTTGCCGGATAATTTATTTCAGGGATCTCATACTTCCTAATTTTCAGTTATATTTTGAACTGTGAGAAACTGAAAAATAGACTGATCAGTGATCACAGTTCTTCTTGTCTTTTCCATTCTCCACCTTAGACCACGGGTCTCTATGATAAATACCTGAAAAAATAAATGATGTTTTATTTTTTGTCGAAAGTTCCTTATATAATAAAGGGAAGGTTGGAAAGATGAAGGCGATTGTGTCAAAACATTCATAAAGAACACCGTCATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCACCCTTGTAGTATTTAGC</pcr_primer_p1>
		<pcr_primer_p2>GGAATTTTTGTAGTTTGAAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTTCACCCTTGTAGTATTTAGCTTTATAGAAATCACCCGCCCTCTTGTCAAATCCCCAGTCAATTTTCACCAAACTAAATAGCCGACTTCTAATTTCTATTTTTCTTCTGTGAATATTACGCCTTCTCGGGTAATTGAATGGCTACGTTTCAATAAGAGTAATTTTATTAGTTTGTAAGCAGTTGTACAATAAATATACAGAACCAATAAACGGACAGTGTAGCACGGGGACTTCAAACTACAAAAATTCC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCACCCTTGTAGTATTTAGCTTTATAGAAATCACCCGCCCTCTTGTCAAATCCCCAGTCAATTTTCACCAAACTAAATAGCCGACTTCTAATTTCTWTTTTTCTTCTGTGAATATTACGCCTTCTCGGGTAATTGAATGGCTACGTTTCAATAAGAGTAATTTTATTAGTTTGTAAGCAGTTGTACAATAAATATACAGAACCAATAAACGGACAGTGTAGCACGGGGACTTCAAACTACAAAAATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12507</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>494662</contig_pos>
        <strand>+</strand>
        <context>TTTCGAGAGA[C/T]TTGAGAATTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCATCTTTGATGAGTACAAAAGGAGAGAAGATGAACTTTTTCGAGAGA</left_flank>
        <right_flank>TTGAGAATTATAAAGTTTCAGAAGTAAGAAATAAACTAACATTTTAATAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAATTGGGCTCAAAATTTGAGGCTTCTATTAGAGGAAATACGGTATTTTAGAGTGTTTACGTACGGTATTCAAGTTCTCGAAACTAACTAAAAAAATTCTCAAAAAGAATGATATCAGGAACTAGTGTTCTCGAAAAAATTCTCGAATCTGAAACCGGTTTGATGTTTTTATTTTCGAGTTAAAAAAAACAAATTGATGAATCATTTCAGTCTATCAAATGGTTTTTTGACGGAATGAAAGTGGGATGCGAGAACTTTCTGCGAGACAAAAATGTTTTCGATTTGATGAAGTCTCGAAACTTCGACGTCGCGATTTTGGAACCACTATCCGTTTGTGGACTTGGATTTTTTGAAAAATTGGGAATCGAGAAAACGATTTTGGCGTCTTCATGTGCAAACTATGACTATTTATTCCGACATTTGGGTGAACCAAATGAATACAGTTATGTTCCATCTTTGATGAGTACAAAAGGAGAGAAGATGAACTTTTTCGAGAGATTTGAGAATTATAAAGTTTCAGAAGTAAGAAATAAACTAACATTTTAATAATAAAAACCGATTAATTCACTTCAGGGAATGAGCAGAGGAATCAGTAGAATGTTCGATGCAGAGCAAAAAACTTATCGAAAGTATCTTGGCAATAATATTCCAGATTGGAGAGATTTACTTCCAGCTGCTTCTTTGTTTTTCACGAATTCCAATCCATATTTGGACTTTCCACGACCTGTTCTTCAGAAGACTGTTCCAATTGGTGGAATATCAGTTGATATGGAGAAAATAAGATCACACAAACTGAATGAAGAATGGAACTTTGTTCTGAATCAAAGGAAACATAATCTACTGATATCATTTGGCTCAATGGTCCACTCGTCTCATATGCATACTGAAGCAAGGGACAATATACTAAAAGTGATTCGATCAGAACCAAATGTCACTTTTATTTGGAAATATGAAACCAATGAAACATCATTCGCCAATGGAATTCCAAATATTCATTTC</canonical>
            <polymorphic>ATAATTGGGCTCAAAATTTGAGGCTTCTATTAGAGGAAATACGGTATTTTAGAGTGTTTACGTACGGTATTCAAGTTCTCGAAACTAACTAAAAAAATTCTCAAAAAGAATGATATCAGGAACTAGTGTTCTCGAAAAAATTCTCGAATCTGAAACCGGTTTGATGTTTTTATTTTCGAGTTAAAAAAAACAAATTGATGAATCATTTCAGTCTATCAAATGGTTTTTTGACGGAATGAAAGTGGGATGCGAGAACTTTCTGCGAGACAAAAATGTTTTCGATTTGATGAAGTCTCGAAACTTCGACGTCGCGATTTTGGAACCACTATCCGTTTGTGGACTTGGATTTTTTGAAAAATTGGGAATCGAGAAAACGATTTTGGCGTCTTCATGTGCAAACTATGACTATTTATTCCGACATTTGGGTGAACCAAATGAATACAGTTATGTTCCATCTTTGATGAGTACAAAAGGAGAGAAGATGAACTTTTTCGAGAGAYTTGAGAATTATAAAGTTTCAGAAGTAAGAAATAAACTAACATTTTAATAATAAAAACCGATTAATTCACTTCAGGGAATGAGCAGAGGAATCAGTAGAATGTTCGATGCAGAGCAAAAAACTTATCGAAAGTATCTTGGCAATAATATTCCAGATTGGAGAGATTTACTTCCAGCTGCTTCTTTGTTTTTCACGAATTCCAATCCATATTTGGACTTTCCACGACCTGTTCTTCAGAAGACTGTTCCAATTGGTGGAATATCAGTTGATATGGAGAAAATAAGATCACACAAACTGAATGAAGAATGGAACTTTGTTCTGAATCAAAGGAAACATAATCTACTGATATCATTTGGCTCAATGGTCCACTCGTCTCATATGCATACTGAAGCAAGGGACAATATACTAAAAGTGATTCGATCAGAACCAAATGTCACTTTTATTTGGAAATATGAAACCAATGAAACATCATTCGCCAATGGAATTCCAAATATTCATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGACTATTTATTCCGACATTTG</pcr_primer_p1>
		<pcr_primer_p2>GGAATATTATTGCCAAGATACTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGACTATTTATTCCGACATTTGGGTGAACCAAATGAATACAGTTATGTTCCATCTTTGATGAGTACAAAAGGAGAGAAGATGAACTTTTTCGAGAGATTTGAGAATTATAAAGTTTCAGAAGTAAGAAATAAACTAACATTTTAATAATAAAAACCGATTAATTCACTTCAGGGAATGAGCAGAGGAATCAGTAGAATGTTCGATGCAGAGCAAAAAACTTATCGAAAGTATCTTGGCAATAATATTCC</canonical_amplicon>
		<polymorphic_amplicon>ATGACTATTTATTCCGACATTTGGGTGAACCAAATGAATACAGTTATGTTCCATCTTTGATGAGTACAAAAGGAGAGAAGATGAACTTTTTCGAGAGAYTTGAGAATTATAAAGTTTCAGAAGTAAGAAATAAACTAACATTTTAATAATAAAAACCGATTAATTCACTTCAGGGAATGAGCAGAGGAATCAGTAGAATGTTCGATGCAGAGCAAAAAACTTATCGAAAGTATCTTGGCAATAATATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12508</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>505335</contig_pos>
        <strand>+</strand>
        <context>CTTTTTTTCA[A/T]TCTGTTAGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGTCAGTTGTGCTCTGTAACTTCTGAAAATTGAGCTCCTCTTTTTTTCA</left_flank>
        <right_flank>TCTGTTAGTACCATTCTGTTCCGCCACGCCATGGTTGTACTATCCGCAAG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGCAACCAACTGATTGTTCCTCATCTCCCAAATGCGACAAACTCCGTCTTCTCCTCCAGTGTACATCCATCTTCCTGCTGCCTGAAATTTATATTAATCTTGTTTTAACGAGTCACAGTTTTGTTGTCACCTCAAATCCAACAACAGTGACATTTCTCGGCAGTTCGATGGTTGCTTTCGGATCTTTTCCAGATGACACATCGTAAATTCGGACTCTTTGCCAAGCACCAACCGCTAAATCTCTTCCAGTTGACGTCAGACTTAACGCATTAACCTGAAATACCATTTTAATAATCCAGGTTTGATAAAACTACACGCTATACCTGTCCTTCGTTGTGAGGGATTGTTCCGATACACTTTCCGGACGCTAGTTGCCACAAACGAATCGATAAGTCATAGGAAGCAGAAACAAGAAGTGCGTTCGGAGAGTTGTCGAACGGTGGCGGTGTGTCAGTTGTGCTCTGTAACTTCTGAAAATTGAGCTCCTCTTTTTTTCATTCTGTTAGTACCATTCTGTTCCGCCACGCCATGGTTGTACTATCCGCAAGTTTGTTGCTGAATTCGACTCTTTTAAAATCCTGTCTAACACAAATTCTGTTCACTAATATATTGTTAATAGATTACCACTAATGTGAATGATAACTCGATCCAAAGACTAATGCAAACTTTTATCCGGTATCATCAACCGATGTCAATTAACATTATTAATTCAAAAGAAACAAAAGGAACGTGCATAATGGGATGTATTCGATTTCAGGATGGCTCTCTTGTGGACTGTACAAACGAGAGAACGACTGATAGAGAATAGCTGAATAAAAAAACATCATTGCTGTTCGATCCGTAAGAGTTGTGGGTGTGTAACGAAGCGAAATGGATGAACAACCTTATGTGAGAAATAGAACAAAAAGAAAACACGCAATGGCTGGATGAGTGGTGAAGTGGACGAATAGAACAAAAATGGGTTACTACCTGAGGAATCGAAATATTATCGAAAAGGA</canonical>
            <polymorphic>TTTGCAACCAACTGATTGTTCCTCATCTCCCAAATGCGACAAACTCCGTCTTCTCCTCCAGTGTACATCCATCTTCCTGCTGCCTGAAATTTATATTAATCTTGTTTTAACGAGTCACAGTTTTGTTGTCACCTCAAATCCAACAACAGTGACATTTCTCGGCAGTTCGATGGTTGCTTTCGGATCTTTTCCAGATGACACATCGTAAATTCGGACTCTTTGCCAAGCACCAACCGCTAAATCTCTTCCAGTTGACGTCAGACTTAACGCATTAACCTGAAATACCATTTTAATAATCCAGGTTTGATAAAACTACACGCTATACCTGTCCTTCGTTGTGAGGGATTGTTCCGATACACTTTCCGGACGCTAGTTGCCACAAACGAATCGATAAGTCATAGGAAGCAGAAACAAGAAGTGCGTTCGGAGAGTTGTCGAACGGTGGCGGTGTGTCAGTTGTGCTCTGTAACTTCTGAAAATTGAGCTCCTCTTTTTTTCAWTCTGTTAGTACCATTCTGTTCCGCCACGCCATGGTTGTACTATCCGCAAGTTTGTTGCTGAATTCGACTCTTTTAAAATCCTGTCTAACACAAATTCTGTTCACTAATATATTGTTAATAGATTACCACTAATGTGAATGATAACTCGATCCAAAGACTAATGCAAACTTTTATCCGGTATCATCAACCGATGTCAATTAACATTATTAATTCAAAAGAAACAAAAGGAACGTGCATAATGGGATGTATTCGATTTCAGGATGGCTCTCTTGTGGACTGTACAAACGAGAGAACGACTGATAGAGAATAGCTGAATAAAAAAACATCATTGCTGTTCGATCCGTAAGAGTTGTGGGTGTGTAACGAAGCGAAATGGATGAACAACCTTATGTGAGAAATAGAACAAAAAGAAAACACGCAATGGCTGGATGAGTGGTGAAGTGGACGAATAGAACAAAAATGGGTTACTACCTGAGGAATCGAAATATTATCGAAAAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGCAGAAACAAGAAGTGC</pcr_primer_p1>
		<pcr_primer_p2>GGATCGAGTTATCATTCACATTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAAGCAGAAACAAGAAGTGCGTTCGGAGAGTTGTCGAACGGTGGCGGTGTGTCAGTTGTGCTCTGTAACTTCTGAAAATTGAGCTCCTCTTTTTTTCATTCTGTTAGTACCATTCTGTTCCGCCACGCCATGGTTGTACTATCCGCAAGTTTGTTGCTGAATTCGACTCTTTTAAAATCCTGTCTAACACAAATTCTGTTCACTAATATATTGTTAATAGATTACCACTAATGTGAATGATAACTCGATCC</canonical_amplicon>
		<polymorphic_amplicon>GAAGCAGAAACAAGAAGTGCGTTCGGAGAGTTGTCGAACGGTGGCGGTGTGTCAGTTGTGCTCTGTAACTTCTGAAAATTGAGCTCCTCTTTTTTTCAWTCTGTTAGTACCATTCTGTTCCGCCACGCCATGGTTGTACTATCCGCAAGTTTGTTGCTGAATTCGACTCTTTTAAAATCCTGTCTAACACAAATTCTGTTCACTAATATATTGTTAATAGATTACCACTAATGTGAATGATAACTCGATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12509</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>528446</contig_pos>
        <strand>+</strand>
        <context>AGAAGAAGTT[A/T]AAAAAASTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAACGTTCGACAAGTGGATGGCTAATTGGTGATAGCTCACAGAAGAAGTT</left_flank>
        <right_flank>AAAAAAGTGAGCGAGCTATGTTGCAACTCTCTCCCTCTGCGATGACCAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCCCAAGTTTTTGAGCTTTTTGACCTAGTGCATCCCATCCAGGATACGTGTGCTTCATATCATGAACCACGCTCTGGTAGAGTGTGGTCAGTAGATTGAACTCGGCATCTGGATCCATCCTGAAAACTGAGGGTTTTCTCCAAAAAAGTTTTGAAACGCGAGAGATAGAGATGTGGTTAGGCTCATGGTCATCTGCATCAGATCCTCCGAAAAACTTTTTGAGCATTCGTCAGTGATGAAACAAACAGATAAAACGGACAAACGCACCACAAAAGGGATGACGGGAAGGAAGAAAAAAAAGAAATAGTATCCAATTCAGAGAGGGAAGTAGAACAACAGTGCGACGGATTATGTAAATGTGACGAGGAGAAAAAGAGCCGGGAGAAAACGAAGGACGAATAAAAAACAAAGTGAGACTGCTGAGTGGGAGATCCGAAATCCCGTGGGAAAACGTTCGACAAGTGGATGGCTAATTGGTGATAGCTCACAGAAGAAGTTAAAAAAAGTGAGCGAGCTATGTTGCAACTCTCTCCCTCTGCGATGACCAACACCTACTCATAAAGAAGCCGCGCAACAGAATAACATCAACTTTGCAACAAAAGTCAAGATCAGTGGGGTCGATGCAAAAAATGCCGCTTCGTCGTCGTCAATCGAGCTGTACAAGAGAGAAGAAAGAACGACGAATGATAAACAAAACCTCCGTTGAGAAGAAACGAGGGATGGCGACCAAAAAGAACTGCTAATACTTTGGTAAGCTGGTCGTGAAGGGGAGGGACTACTTCTACTAATTCTACGAGTAAATAAACCGTTTCACTAGGGAGGTTTCTGTGCAATGGAAAATAAAGAAAAAAAAGTACCCTCCAAAAGAAACAAAAATAAAATCGACCAGGTTGATCATCCAGAACGATCTTTATTTGCATAAGCTGGGTGGTGGCCTCACCTCGAAGAGATATGTACAAAATGTAATATAAATAAAGGATAGTACGCGGAAAAGAGGTG</canonical>
            <polymorphic>GTCCCAAGTTTTTGAGCTTTTTGACCTAGTGCATCCCATCCAGGATACGTGTGCTTCATATCATGAACCACGCTCTGGTAGAGTGTGGTCAGTAGATTGAACTCGGCATCTGGATCCATCCTGAAAACTGAGGGTTTTCTCCAAAAAAGTTTTGAAACGCGAGAGATAGAGATGTGGTTAGGCTCATGGTCATCTGCATCAGATCCTCCGAAAAACTTTTTGAGCATTCGTCAGTGATGAAACAAACAGATAAAACGGACAAACGCACCACAAAAGGGATGACGGGAAGGAAGAAAAAAAAGAAATAGTATCCAATTCAGAGAGGGAAGTAGAACAACAGTGCGACGGATTATGTAAATGTGACGAGGAGAAAAAGAGCCGGGAGAAAACGAAGGACGAATAAAAAACAAAGTGAGACTGCTGAGTGGGAGATCCGAAATCCCGTGGGAAAACGTTCGACAAGTGGATGGCTAATTGGTGATAGCTCACAGAAGAAGTTWAAAAAAGTGAGCGAGCTATGTTGCAACTCTCTCCCTCTGCGATGACCAACACCTACTCATAAAGAAGCCGCGCAACAGAATAACATCAACTTTGCAACAAAAGTCAAGATCAGTGGGGTCGATGCAAAAAATGCCGCTTCGTCGTCGTCAATCGAGCTGTACAAGAGAGAAGAAAGAACGACGAATGATAAACAAAACCTCCGTTGAGAAGAAACGAGGGATGGCGACCAAAAAGAACTGCTAATACTTTGGTAAGCTGGTCGTGAAGGGGAGGGACTACTTCTACTAATTCTACGAGTAAATAAACCGTTTCACTAGGGAGGTTTCTGTGCAATGGAAAATAAAGAAAAAAAAGTACCCTCCAAAAGAAACAAAAATAAAATCGACCAGGTTGATCATCCAGAACGATCTTTATTTGCATAAGCTGGGTGGTGGCCTCACCTCGAAGAGATATGTACAAAATGTAATATAAATAAAGGATAGTACGCGGAAAAGAGGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGAGGGAAGTAGAACAACAGT</pcr_primer_p1>
		<pcr_primer_p2>CTTTATGAGTAGGTGTTGGTCAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAGAGGGAAGTAGAACAACAGTGCGACGGATTATGTAAATGTGACGAGGAGAAAAAGAGCCGGGAGAAAACGAAGGACGAATAAAAAACAAAGTGAGACTGCTGAGTGGGAGATCCGAAATCCCGTGGGAAAACGTTCGACAAGTGGATGGCTAATTGGTGATAGCTCACAGAAGAAGTTAAAAAAAGTGAGCGAGCTATGTTGCAACTCTCTCCCTCTGCGATGACCAACACCTACTCATAAAG</canonical_amplicon>
		<polymorphic_amplicon>AGAGAGGGAAGTAGAACAACAGTGCGACGGATTATGTAAATGTGACGAGGAGAAAAAGAGCCGGGAGAAAACGAAGGACGAATAAAAAACAAAGTGAGACTGCTGAGTGGGAGATCCGAAATCCCGTGGGAAAACGTTCGACAAGTGGATGGCTAATTGGTGATAGCTCACAGAAGAAGTTWAAAAAAGTGAGCGAGCTATGTTGCAACTCTCTCCCTCTGCGATGACCAACACCTACTCATAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12510</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>528453</contig_pos>
        <strand>+</strand>
        <context>GTTWAAAAAA[C/G]TGAGCGAGCT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGACAAGTGGATGGCTAATTGGTGATAGCTCACAGAAGAAGTTAAAAAAA</left_flank>
        <right_flank>TGAGCGAGCTATGTTGCAACTCTCTCCCTCTGCGATGACCAACACCTACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTTGAGCTTTTTGACCTAGTGCATCCCATCCAGGATACGTGTGCTTCATATCATGAACCACGCTCTGGTAGAGTGTGGTCAGTAGATTGAACTCGGCATCTGGATCCATCCTGAAAACTGAGGGTTTTCTCCAAAAAAGTTTTGAAACGCGAGAGATAGAGATGTGGTTAGGCTCATGGTCATCTGCATCAGATCCTCCGAAAAACTTTTTGAGCATTCGTCAGTGATGAAACAAACAGATAAAACGGACAAACGCACCACAAAAGGGATGACGGGAAGGAAGAAAAAAAAGAAATAGTATCCAATTCAGAGAGGGAAGTAGAACAACAGTGCGACGGATTATGTAAATGTGACGAGGAGAAAAAGAGCCGGGAGAAAACGAAGGACGAATAAAAAACAAAGTGAGACTGCTGAGTGGGAGATCCGAAATCCCGTGGGAAAACGTTCGACAAGTGGATGGCTAATTGGTGATAGCTCACAGAAGAAGTTAAAAAAAGTGAGCGAGCTATGTTGCAACTCTCTCCCTCTGCGATGACCAACACCTACTCATAAAGAAGCCGCGCAACAGAATAACATCAACTTTGCAACAAAAGTCAAGATCAGTGGGGTCGATGCAAAAAATGCCGCTTCGTCGTCGTCAATCGAGCTGTACAAGAGAGAAGAAAGAACGACGAATGATAAACAAAACCTCCGTTGAGAAGAAACGAGGGATGGCGACCAAAAAGAACTGCTAATACTTTGGTAAGCTGGTCGTGAAGGGGAGGGACTACTTCTACTAATTCTACGAGTAAATAAACCGTTTCACTAGGGAGGTTTCTGTGCAATGGAAAATAAAGAAAAAAAAGTACCCTCCAAAAGAAACAAAAATAAAATCGACCAGGTTGATCATCCAGAACGATCTTTATTTGCATAAGCTGGGTGGTGGCCTCACCTCGAAGAGATATGTACAAAATGTAATATAAATAAAGGATAGTACGCGGAAAAGAGGTGCCATGTA</canonical>
            <polymorphic>GTTTTTGAGCTTTTTGACCTAGTGCATCCCATCCAGGATACGTGTGCTTCATATCATGAACCACGCTCTGGTAGAGTGTGGTCAGTAGATTGAACTCGGCATCTGGATCCATCCTGAAAACTGAGGGTTTTCTCCAAAAAAGTTTTGAAACGCGAGAGATAGAGATGTGGTTAGGCTCATGGTCATCTGCATCAGATCCTCCGAAAAACTTTTTGAGCATTCGTCAGTGATGAAACAAACAGATAAAACGGACAAACGCACCACAAAAGGGATGACGGGAAGGAAGAAAAAAAAGAAATAGTATCCAATTCAGAGAGGGAAGTAGAACAACAGTGCGACGGATTATGTAAATGTGACGAGGAGAAAAAGAGCCGGGAGAAAACGAAGGACGAATAAAAAACAAAGTGAGACTGCTGAGTGGGAGATCCGAAATCCCGTGGGAAAACGTTCGACAAGTGGATGGCTAATTGGTGATAGCTCACAGAAGAAGTTAAAAAAASTGAGCGAGCTATGTTGCAACTCTCTCCCTCTGCGATGACCAACACCTACTCATAAAGAAGCCGCGCAACAGAATAACATCAACTTTGCAACAAAAGTCAAGATCAGTGGGGTCGATGCAAAAAATGCCGCTTCGTCGTCGTCAATCGAGCTGTACAAGAGAGAAGAAAGAACGACGAATGATAAACAAAACCTCCGTTGAGAAGAAACGAGGGATGGCGACCAAAAAGAACTGCTAATACTTTGGTAAGCTGGTCGTGAAGGGGAGGGACTACTTCTACTAATTCTACGAGTAAATAAACCGTTTCACTAGGGAGGTTTCTGTGCAATGGAAAATAAAGAAAAAAAAGTACCCTCCAAAAGAAACAAAAATAAAATCGACCAGGTTGATCATCCAGAACGATCTTTATTTGCATAAGCTGGGTGGTGGCCTCACCTCGAAGAGATATGTACAAAATGTAATATAAATAAAGGATAGTACGCGGAAAAGAGGTGCCATGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>150 100 89 72 64 60 60 52 49 42 31 24 21 20 20 19 19 17 17 15 15 13 8 7 6 3 3 2 2</canonical_bands>
                <polymorphic_bands>150 100 89 72 64 63 60 60 52 49 31 24 20 20 19 19 17 17 15 15 13 8 7 6 3 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGAGGGAAGTAGAACAACAGT</pcr_primer_p1>
		<pcr_primer_p2>CTTTATGAGTAGGTGTTGGTCAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAGAGGGAAGTAGAACAACAGTGCGACGGATTATGTAAATGTGACGAGGAGAAAAAGAGCCGGGAGAAAACGAAGGACGAATAAAAAACAAAGTGAGACTGCTGAGTGGGAGATCCGAAATCCCGTGGGAAAACGTTCGACAAGTGGATGGCTAATTGGTGATAGCTCACAGAAGAAGTTAAAAAAAGTGAGCGAGCTATGTTGCAACTCTCTCCCTCTGCGATGACCAACACCTACTCATAAAG</canonical_amplicon>
		<polymorphic_amplicon>AGAGAGGGAAGTAGAACAACAGTGCGACGGATTATGTAAATGTGACGAGGAGAAAAAGAGCCGGGAGAAAACGAAGGACGAATAAAAAACAAAGTGAGACTGCTGAGTGGGAGATCCGAAATCCCGTGGGAAAACGTTCGACAAGTGGATGGCTAATTGGTGATAGCTCACAGAAGAAGTTAAAAAAASTGAGCGAGCTATGTTGCAACTCTCTCCCTCTGCGATGACCAACACCTACTCATAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12511</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>528470</contig_pos>
        <strand>+</strand>
        <context>AGCTATGTTG[C/T]AACTCTCTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGGTGATAGCTCACAGAAGAAGTTAAAAAAAGTGAGCGAGCTATGTTG</left_flank>
        <right_flank>AACTCTCTCCCTCTGCGATGACCAACACCTACTCATAAAGAAGCCGCGCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTAGTGCATCCCATCCAGGATACGTGTGCTTCATATCATGAACCACGCTCTGGTAGAGTGTGGTCAGTAGATTGAACTCGGCATCTGGATCCATCCTGAAAACTGAGGGTTTTCTCCAAAAAAGTTTTGAAACGCGAGAGATAGAGATGTGGTTAGGCTCATGGTCATCTGCATCAGATCCTCCGAAAAACTTTTTGAGCATTCGTCAGTGATGAAACAAACAGATAAAACGGACAAACGCACCACAAAAGGGATGACGGGAAGGAAGAAAAAAAAGAAATAGTATCCAATTCAGAGAGGGAAGTAGAACAACAGTGCGACGGATTATGTAAATGTGACGAGGAGAAAAAGAGCCGGGAGAAAACGAAGGACGAATAAAAAACAAAGTGAGACTGCTGAGTGGGAGATCCGAAATCCCGTGGGAAAACGTTCGACAAGTGGATGGCTAATTGGTGATAGCTCACAGAAGAAGTTAAAAAAAGTGAGCGAGCTATGTTGCAACTCTCTCCCTCTGCGATGACCAACACCTACTCATAAAGAAGCCGCGCAACAGAATAACATCAACTTTGCAACAAAAGTCAAGATCAGTGGGGTCGATGCAAAAAATGCCGCTTCGTCGTCGTCAATCGAGCTGTACAAGAGAGAAGAAAGAACGACGAATGATAAACAAAACCTCCGTTGAGAAGAAACGAGGGATGGCGACCAAAAAGAACTGCTAATACTTTGGTAAGCTGGTCGTGAAGGGGAGGGACTACTTCTACTAATTCTACGAGTAAATAAACCGTTTCACTAGGGAGGTTTCTGTGCAATGGAAAATAAAGAAAAAAAAGTACCCTCCAAAAGAAACAAAAATAAAATCGACCAGGTTGATCATCCAGAACGATCTTTATTTGCATAAGCTGGGTGGTGGCCTCACCTCGAAGAGATATGTACAAAATGTAATATAAATAAAGGATAGTACGCGGAAAAGAGGTGCCATGTAGCATACAGGAAAAGATG</canonical>
            <polymorphic>CCTAGTGCATCCCATCCAGGATACGTGTGCTTCATATCATGAACCACGCTCTGGTAGAGTGTGGTCAGTAGATTGAACTCGGCATCTGGATCCATCCTGAAAACTGAGGGTTTTCTCCAAAAAAGTTTTGAAACGCGAGAGATAGAGATGTGGTTAGGCTCATGGTCATCTGCATCAGATCCTCCGAAAAACTTTTTGAGCATTCGTCAGTGATGAAACAAACAGATAAAACGGACAAACGCACCACAAAAGGGATGACGGGAAGGAAGAAAAAAAAGAAATAGTATCCAATTCAGAGAGGGAAGTAGAACAACAGTGCGACGGATTATGTAAATGTGACGAGGAGAAAAAGAGCCGGGAGAAAACGAAGGACGAATAAAAAACAAAGTGAGACTGCTGAGTGGGAGATCCGAAATCCCGTGGGAAAACGTTCGACAAGTGGATGGCTAATTGGTGATAGCTCACAGAAGAAGTTAAAAAAAGTGAGCGAGCTATGTTGYAACTCTCTCCCTCTGCGATGACCAACACCTACTCATAAAGAAGCCGCGCAACAGAATAACATCAACTTTGCAACAAAAGTCAAGATCAGTGGGGTCGATGCAAAAAATGCCGCTTCGTCGTCGTCAATCGAGCTGTACAAGAGAGAAGAAAGAACGACGAATGATAAACAAAACCTCCGTTGAGAAGAAACGAGGGATGGCGACCAAAAAGAACTGCTAATACTTTGGTAAGCTGGTCGTGAAGGGGAGGGACTACTTCTACTAATTCTACGAGTAAATAAACCGTTTCACTAGGGAGGTTTCTGTGCAATGGAAAATAAAGAAAAAAAAGTACCCTCCAAAAGAAACAAAAATAAAATCGACCAGGTTGATCATCCAGAACGATCTTTATTTGCATAAGCTGGGTGGTGGCCTCACCTCGAAGAGATATGTACAAAATGTAATATAAATAAAGGATAGTACGCGGAAAAGAGGTGCCATGTAGCATACAGGAAAAGATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>327 207 165 106 87 71 30 7</canonical_bands>
                <polymorphic_bands>398 207 165 106 87 30 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATTGGTGATAGCTCACAGAAG</pcr_primer_p1>
		<pcr_primer_p2>ATCCCTCGTTTCTTCTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAATTGGTGATAGCTCACAGAAGAAGTTAAAAAAAGTGAGCGAGCTATGTTGCAACTCTCTCCCTCTGCGATGACCAACACCTACTCATAAAGAAGCCGCGCAACAGAATAACATCAACTTTGCAACAAAAGTCAAGATCAGTGGGGTCGATGCAAAAAATGCCGCTTCGTCGTCGTCAATCGAGCTGTACAAGAGAGAAGAAAGAACGACGAATGATAAACAAAACCTCCGTTGAGAAGAAACGAGGGAT</canonical_amplicon>
		<polymorphic_amplicon>TAATTGGTGATAGCTCACAGAAGAAGTTAAAAAAAGTGAGCGAGCTATGTTGYAACTCTCTCCCTCTGCGATGACCAACACCTACTCATAAAGAAGCCGCGCAACAGAATAACATCAACTTTGCAACAAAAGTCAAGATCAGTGGGGTCGATGCAAAAAATGCCGCTTCGTCGTCGTCAATCGAGCTGTACAAGAGAGAAGAAAGAACGACGAATGATAAACAAAACCTCCGTTGAGAAGAAACGAGGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12512</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>528533</contig_pos>
        <strand>+</strand>
        <context>AGAATAACAT[A/C]AACTTTGCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGCGATGACCAACACCTACTCATAAAGAAGCCGCGCAACAGAATAACAT</left_flank>
        <right_flank>AACTTTGCAACAAAAGTCAAGATCAGTGGGGTCGATGCAAAAAATGCCGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCAGTAGATTGAACTCGGCATCTGGATCCATCCTGAAAACTGAGGGTTTTCTCCAAAAAAGTTTTGAAACGCGAGAGATAGAGATGTGGTTAGGCTCATGGTCATCTGCATCAGATCCTCCGAAAAACTTTTTGAGCATTCGTCAGTGATGAAACAAACAGATAAAACGGACAAACGCACCACAAAAGGGATGACGGGAAGGAAGAAAAAAAAGAAATAGTATCCAATTCAGAGAGGGAAGTAGAACAACAGTGCGACGGATTATGTAAATGTGACGAGGAGAAAAAGAGCCGGGAGAAAACGAAGGACGAATAAAAAACAAAGTGAGACTGCTGAGTGGGAGATCCGAAATCCCGTGGGAAAACGTTCGACAAGTGGATGGCTAATTGGTGATAGCTCACAGAAGAAGTTAAAAAAAGTGAGCGAGCTATGTTGCAACTCTCTCCCTCTGCGATGACCAACACCTACTCATAAAGAAGCCGCGCAACAGAATAACATCAACTTTGCAACAAAAGTCAAGATCAGTGGGGTCGATGCAAAAAATGCCGCTTCGTCGTCGTCAATCGAGCTGTACAAGAGAGAAGAAAGAACGACGAATGATAAACAAAACCTCCGTTGAGAAGAAACGAGGGATGGCGACCAAAAAGAACTGCTAATACTTTGGTAAGCTGGTCGTGAAGGGGAGGGACTACTTCTACTAATTCTACGAGTAAATAAACCGTTTCACTAGGGAGGTTTCTGTGCAATGGAAAATAAAGAAAAAAAAGTACCCTCCAAAAGAAACAAAAATAAAATCGACCAGGTTGATCATCCAGAACGATCTTTATTTGCATAAGCTGGGTGGTGGCCTCACCTCGAAGAGATATGTACAAAATGTAATATAAATAAAGGATAGTACGCGGAAAAGAGGTGCCATGTAGCATACAGGAAAAGATGCGGAAATCCATGGAAAGAGTGCCAATGGGGAAGAGCCATGAGCCATCCTTCACGCTTTGGAAA</canonical>
            <polymorphic>GTCAGTAGATTGAACTCGGCATCTGGATCCATCCTGAAAACTGAGGGTTTTCTCCAAAAAAGTTTTGAAACGCGAGAGATAGAGATGTGGTTAGGCTCATGGTCATCTGCATCAGATCCTCCGAAAAACTTTTTGAGCATTCGTCAGTGATGAAACAAACAGATAAAACGGACAAACGCACCACAAAAGGGATGACGGGAAGGAAGAAAAAAAAGAAATAGTATCCAATTCAGAGAGGGAAGTAGAACAACAGTGCGACGGATTATGTAAATGTGACGAGGAGAAAAAGAGCCGGGAGAAAACGAAGGACGAATAAAAAACAAAGTGAGACTGCTGAGTGGGAGATCCGAAATCCCGTGGGAAAACGTTCGACAAGTGGATGGCTAATTGGTGATAGCTCACAGAAGAAGTTAAAAAAAGTGAGCGAGCTATGTTGCAACTCTCTCCCTCTGCGATGACCAACACCTACTCATAAAGAAGCCGCGCAACAGAATAACATMAACTTTGCAACAAAAGTCAAGATCAGTGGGGTCGATGCAAAAAATGCCGCTTCGTCGTCGTCAATCGAGCTGTACAAGAGAGAAGAAAGAACGACGAATGATAAACAAAACCTCCGTTGAGAAGAAACGAGGGATGGCGACCAAAAAGAACTGCTAATACTTTGGTAAGCTGGTCGTGAAGGGGAGGGACTACTTCTACTAATTCTACGAGTAAATAAACCGTTTCACTAGGGAGGTTTCTGTGCAATGGAAAATAAAGAAAAAAAAGTACCCTCCAAAAGAAACAAAAATAAAATCGACCAGGTTGATCATCCAGAACGATCTTTATTTGCATAAGCTGGGTGGTGGCCTCACCTCGAAGAGATATGTACAAAATGTAATATAAATAAAGGATAGTACGCGGAAAAGAGGTGCCATGTAGCATACAGGAAAAGATGCGGAAATCCATGGAAAGAGTGCCAATGGGGAAGAGCCATGAGCCATCCTTCACGCTTTGGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATTGGTGATAGCTCACAGAAG</pcr_primer_p1>
		<pcr_primer_p2>ATCCCTCGTTTCTTCTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAATTGGTGATAGCTCACAGAAGAAGTTAAAAAAAGTGAGCGAGCTATGTTGCAACTCTCTCCCTCTGCGATGACCAACACCTACTCATAAAGAAGCCGCGCAACAGAATAACATCAACTTTGCAACAAAAGTCAAGATCAGTGGGGTCGATGCAAAAAATGCCGCTTCGTCGTCGTCAATCGAGCTGTACAAGAGAGAAGAAAGAACGACGAATGATAAACAAAACCTCCGTTGAGAAGAAACGAGGGAT</canonical_amplicon>
		<polymorphic_amplicon>TAATTGGTGATAGCTCACAGAAGAAGTTAAAAAAAGTGAGCGAGCTATGTTGCAACTCTCTCCCTCTGCGATGACCAACACCTACTCATAAAGAAGCCGCGCAACAGAATAACATMAACTTTGCAACAAAAGTCAAGATCAGTGGGGTCGATGCAAAAAATGCCGCTTCGTCGTCGTCAATCGAGCTGTACAAGAGAGAAGAAAGAACGACGAATGATAAACAAAACCTCCGTTGAGAAGAAACGAGGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12513</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>528549</contig_pos>
        <strand>+</strand>
        <context>TGCAACAAAA[A/G]TCAAGATCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTACTCATAAAGAAGCCGCGCAACAGAATAACATCAACTTTGCAACAAAA</left_flank>
        <right_flank>TCAAGATCAGTGGGGTCGATGCAAAAAATGCCGCTTCGTCGTCGTCAATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGCATCTGGATCCATCCTGAAAACTGAGGGTTTTCTCCAAAAAAGTTTTGAAACGCGAGAGATAGAGATGTGGTTAGGCTCATGGTCATCTGCATCAGATCCTCCGAAAAACTTTTTGAGCATTCGTCAGTGATGAAACAAACAGATAAAACGGACAAACGCACCACAAAAGGGATGACGGGAAGGAAGAAAAAAAAGAAATAGTATCCAATTCAGAGAGGGAAGTAGAACAACAGTGCGACGGATTATGTAAATGTGACGAGGAGAAAAAGAGCCGGGAGAAAACGAAGGACGAATAAAAAACAAAGTGAGACTGCTGAGTGGGAGATCCGAAATCCCGTGGGAAAACGTTCGACAAGTGGATGGCTAATTGGTGATAGCTCACAGAAGAAGTTAAAAAAAGTGAGCGAGCTATGTTGCAACTCTCTCCCTCTGCGATGACCAACACCTACTCATAAAGAAGCCGCGCAACAGAATAACATCAACTTTGCAACAAAAGTCAAGATCAGTGGGGTCGATGCAAAAAATGCCGCTTCGTCGTCGTCAATCGAGCTGTACAAGAGAGAAGAAAGAACGACGAATGATAAACAAAACCTCCGTTGAGAAGAAACGAGGGATGGCGACCAAAAAGAACTGCTAATACTTTGGTAAGCTGGTCGTGAAGGGGAGGGACTACTTCTACTAATTCTACGAGTAAATAAACCGTTTCACTAGGGAGGTTTCTGTGCAATGGAAAATAAAGAAAAAAAAGTACCCTCCAAAAGAAACAAAAATAAAATCGACCAGGTTGATCATCCAGAACGATCTTTATTTGCATAAGCTGGGTGGTGGCCTCACCTCGAAGAGATATGTACAAAATGTAATATAAATAAAGGATAGTACGCGGAAAAGAGGTGCCATGTAGCATACAGGAAAAGATGCGGAAATCCATGGAAAGAGTGCCAATGGGGAAGAGCCATGAGCCATCCTTCACGCTTTGGAAACACAGTGTGCGCAGGT</canonical>
            <polymorphic>CGGCATCTGGATCCATCCTGAAAACTGAGGGTTTTCTCCAAAAAAGTTTTGAAACGCGAGAGATAGAGATGTGGTTAGGCTCATGGTCATCTGCATCAGATCCTCCGAAAAACTTTTTGAGCATTCGTCAGTGATGAAACAAACAGATAAAACGGACAAACGCACCACAAAAGGGATGACGGGAAGGAAGAAAAAAAAGAAATAGTATCCAATTCAGAGAGGGAAGTAGAACAACAGTGCGACGGATTATGTAAATGTGACGAGGAGAAAAAGAGCCGGGAGAAAACGAAGGACGAATAAAAAACAAAGTGAGACTGCTGAGTGGGAGATCCGAAATCCCGTGGGAAAACGTTCGACAAGTGGATGGCTAATTGGTGATAGCTCACAGAAGAAGTTAAAAAAAGTGAGCGAGCTATGTTGCAACTCTCTCCCTCTGCGATGACCAACACCTACTCATAAAGAAGCCGCGCAACAGAATAACATCAACTTTGCAACAAAARTCAAGATCAGTGGGGTCGATGCAAAAAATGCCGCTTCGTCGTCGTCAATCGAGCTGTACAAGAGAGAAGAAAGAACGACGAATGATAAACAAAACCTCCGTTGAGAAGAAACGAGGGATGGCGACCAAAAAGAACTGCTAATACTTTGGTAAGCTGGTCGTGAAGGGGAGGGACTACTTCTACTAATTCTACGAGTAAATAAACCGTTTCACTAGGGAGGTTTCTGTGCAATGGAAAATAAAGAAAAAAAAGTACCCTCCAAAAGAAACAAAAATAAAATCGACCAGGTTGATCATCCAGAACGATCTTTATTTGCATAAGCTGGGTGGTGGCCTCACCTCGAAGAGATATGTACAAAATGTAATATAAATAAAGGATAGTACGCGGAAAAGAGGTGCCATGTAGCATACAGGAAAAGATGCGGAAATCCATGGAAAGAGTGCCAATGGGGAAGAGCCATGAGCCATCCTTCACGCTTTGGAAACACAGTGTGCGCAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATTGGTGATAGCTCACAGAAG</pcr_primer_p1>
		<pcr_primer_p2>ATCCCTCGTTTCTTCTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAATTGGTGATAGCTCACAGAAGAAGTTAAAAAAAGTGAGCGAGCTATGTTGCAACTCTCTCCCTCTGCGATGACCAACACCTACTCATAAAGAAGCCGCGCAACAGAATAACATCAACTTTGCAACAAAAGTCAAGATCAGTGGGGTCGATGCAAAAAATGCCGCTTCGTCGTCGTCAATCGAGCTGTACAAGAGAGAAGAAAGAACGACGAATGATAAACAAAACCTCCGTTGAGAAGAAACGAGGGAT</canonical_amplicon>
		<polymorphic_amplicon>TAATTGGTGATAGCTCACAGAAGAAGTTAAAAAAAGTGAGCGAGCTATGTTGCAACTCTCTCCCTCTGCGATGACCAACACCTACTCATAAAGAAGCCGCGCAACAGAATAACATCAACTTTGCAACAAAARTCAAGATCAGTGGGGTCGATGCAAAAAATGCCGCTTCGTCGTCGTCAATCGAGCTGTACAAGAGAGAAGAAAGAACGACGAATGATAAACAAAACCTCCGTTGAGAAGAAACGAGGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12514</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>528729</contig_pos>
        <strand>+</strand>
        <context>GGGACTACTT[C/T]TACTAATTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGAACTGCTAATACTTTGGTAAGCTGGTCGTGAAGGGGAGGGACTACTT</left_flank>
        <right_flank>TACTAATTCTACGAGTAAATAAACCGTTTCACTAGGGAGGTTTCTGTGCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGAAGGAAGAAAAAAAAGAAATAGTATCCAATTCAGAGAGGGAAGTAGAACAACAGTGCGACGGATTATGTAAATGTGACGAGGAGAAAAAGAGCCGGGAGAAAACGAAGGACGAATAAAAAACAAAGTGAGACTGCTGAGTGGGAGATCCGAAATCCCGTGGGAAAACGTTCGACAAGTGGATGGCTAATTGGTGATAGCTCACAGAAGAAGTTAAAAAAAGTGAGCGAGCTATGTTGCAACTCTCTCCCTCTGCGATGACCAACACCTACTCATAAAGAAGCCGCGCAACAGAATAACATCAACTTTGCAACAAAAGTCAAGATCAGTGGGGTCGATGCAAAAAATGCCGCTTCGTCGTCGTCAATCGAGCTGTACAAGAGAGAAGAAAGAACGACGAATGATAAACAAAACCTCCGTTGAGAAGAAACGAGGGATGGCGACCAAAAAGAACTGCTAATACTTTGGTAAGCTGGTCGTGAAGGGGAGGGACTACTTCTACTAATTCTACGAGTAAATAAACCGTTTCACTAGGGAGGTTTCTGTGCAATGGAAAATAAAGAAAAAAAAGTACCCTCCAAAAGAAACAAAAATAAAATCGACCAGGTTGATCATCCAGAACGATCTTTATTTGCATAAGCTGGGTGGTGGCCTCACCTCGAAGAGATATGTACAAAATGTAATATAAATAAAGGATAGTACGCGGAAAAGAGGTGCCATGTAGCATACAGGAAAAGATGCGGAAATCCATGGAAAGAGTGCCAATGGGGAAGAGCCATGAGCCATCCTTCACGCTTTGGAAACACAGTGTGCGCAGGTACTGTGGAGTGAGAGCACACAAAACAAGTACGGCACAGGAACCCGATCCCGATGGGAGGCATTGTGCACAAAAAGTGGAATACGAATAATGCGGTCACGGGTCATCAGCCATAGTGAATGCATTGTGCAGGCGGGGGAAAAACTGGGTGCACATTACGGTATCTCATTTCATGAATGAAC</canonical>
            <polymorphic>GGGAAGGAAGAAAAAAAAGAAATAGTATCCAATTCAGAGAGGGAAGTAGAACAACAGTGCGACGGATTATGTAAATGTGACGAGGAGAAAAAGAGCCGGGAGAAAACGAAGGACGAATAAAAAACAAAGTGAGACTGCTGAGTGGGAGATCCGAAATCCCGTGGGAAAACGTTCGACAAGTGGATGGCTAATTGGTGATAGCTCACAGAAGAAGTTAAAAAAAGTGAGCGAGCTATGTTGCAACTCTCTCCCTCTGCGATGACCAACACCTACTCATAAAGAAGCCGCGCAACAGAATAACATCAACTTTGCAACAAAAGTCAAGATCAGTGGGGTCGATGCAAAAAATGCCGCTTCGTCGTCGTCAATCGAGCTGTACAAGAGAGAAGAAAGAACGACGAATGATAAACAAAACCTCCGTTGAGAAGAAACGAGGGATGGCGACCAAAAAGAACTGCTAATACTTTGGTAAGCTGGTCGTGAAGGGGAGGGACTACTTYTACTAATTCTACGAGTAAATAAACCGTTTCACTAGGGAGGTTTCTGTGCAATGGAAAATAAAGAAAAAAAAGTACCCTCCAAAAGAAACAAAAATAAAATCGACCAGGTTGATCATCCAGAACGATCTTTATTTGCATAAGCTGGGTGGTGGCCTCACCTCGAAGAGATATGTACAAAATGTAATATAAATAAAGGATAGTACGCGGAAAAGAGGTGCCATGTAGCATACAGGAAAAGATGCGGAAATCCATGGAAAGAGTGCCAATGGGGAAGAGCCATGAGCCATCCTTCACGCTTTGGAAACACAGTGTGCGCAGGTACTGTGGAGTGAGAGCACACAAAACAAGTACGGCACAGGAACCCGATCCCGATGGGAGGCATTGTGCACAAAAAGTGGAATACGAATAATGCGGTCACGGGTCATCAGCCATAGTGAATGCATTGTGCAGGCGGGGGAAAAACTGGGTGCACATTACGGTATCTCATTTCATGAATGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAAGAACGACGAATGATAA</pcr_primer_p1>
		<pcr_primer_p2>AAATAAAGATCGTTCTGGATGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGAAAGAACGACGAATGATAAACAAAACCTCCGTTGAGAAGAAACGAGGGATGGCGACCAAAAAGAACTGCTAATACTTTGGTAAGCTGGTCGTGAAGGGGAGGGACTACTTCTACTAATTCTACGAGTAAATAAACCGTTTCACTAGGGAGGTTTCTGTGCAATGGAAAATAAAGAAAAAAAAGTACCCTCCAAAAGAAACAAAAATAAAATCGACCAGGTTGATCATCCAGAACGATCTTTATTT</canonical_amplicon>
		<polymorphic_amplicon>AAGAAAGAACGACGAATGATAAACAAAACCTCCGTTGAGAAGAAACGAGGGATGGCGACCAAAAAGAACTGCTAATACTTTGGTAAGCTGGTCGTGAAGGGGAGGGACTACTTYTACTAATTCTACGAGTAAATAAACCGTTTCACTAGGGAGGTTTCTGTGCAATGGAAAATAAAGAAAAAAAAGTACCCTCCAAAAGAAACAAAAATAAAATCGACCAGGTTGATCATCCAGAACGATCTTTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12515</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>532060</contig_pos>
        <strand>+</strand>
        <context>AGAATCGTCG[A/C]GTGTGCAGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCTTCGAATAGTGTCCGGAATAGGAGAAATCGGAAAAAAGAGAATCGTCG</left_flank>
        <right_flank>GTGTGCAGATGTAAATGTTATACATCAAAGCGGTACCAGGACATCTGTCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGAGGTGCAGCATCAAGAGAAGTGTAGGGGTGGCAAATCAAACCAAAATGAGATGAATCCTTCGTGTTGCGAAGTGAAGAAAATGAGAGGAGAAGAAGAAAGAAGAAGGGAAGAAGATGGGAGTCGGAAGGAAGGATAGTTGGCTACCAATGGGTTTCGCGGCTGCTAATATAAACAACGTCCACTCAAAACTTTTCTTCAAGAAACGATTCTATGCCTTCTTCATTTTCTTATATTCTCTTTTTGTTTCTGAAGAGGTAAGAAAAGTCACCTTAATTCTACCAAATCCTGACAGCTGTCCACTTCAGCGCGAGTGAAATAACAGCTGCCAGGAGGAGAAGAAGGTCGCAAAGAAGTCCATCGAGAATGAGGGGTCACCTGTGTAAGGCTGTAATTTGGGGAGGAGAACATTGTGTGAAGCTGGCATTTTATGTCACACATCCAGGTTCCTTCGAATAGTGTCCGGAATAGGAGAAATCGGAAAAAAGAGAATCGTCGAGTGTGCAGATGTAAATGTTATACATCAAAGCGGTACCAGGACATCTGTCCGGTCATAAACGGACATGGACGAAAGCGGAGAAGAAAATGAGTTATTATAATAAGGTCGGGGGTCCTGCCCGTCCAGAATTGGATGTTGGGGAAACAAGAGGATCAACGTCAAAGTGTGATCTACACATTTTTCATGCATAATGATGTTTCCATATGCATACACATGTATGATAATTATCAATACAATTGGGCAATTCGTATTGCGAGCAAAAAAATTAATTAAAATAGTGTACAAAAAGTGGGCGCCGACATGATGAATATAACGGAGGTAGGCGGGCGCCGCCATCACAGGCTGGATGCAACAAAAAGTAGTTAATTTGTACTATGGGATTCGATTCGTTTTTCCGATGATGATCGAACACAGCAATTGATCCATTGAAATTGTAGGAAGAGTAGTAGGAAAATCAACGGGAAACGAGAGAGATATGCGGCAAGTATGATGGGTGGAAG</canonical>
            <polymorphic>TAGAGGTGCAGCATCAAGAGAAGTGTAGGGGTGGCAAATCAAACCAAAATGAGATGAATCCTTCGTGTTGCGAAGTGAAGAAAATGAGAGGAGAAGAAGAAAGAAGAAGGGAAGAAGATGGGAGTCGGAAGGAAGGATAGTTGGCTACCAATGGGTTTCGCGGCTGCTAATATAAACAACGTCCACTCAAAACTTTTCTTCAAGAAACGATTCTATGCCTTCTTCATTTTCTTATATTCTCTTTTTGTTTCTGAAGAGGTAAGAAAAGTCACCTTAATTCTACCAAATCCTGACAGCTGTCCACTTCAGCGCGAGTGAAATAACAGCTGCCAGGAGGAGAAGAAGGTCGCAAAGAAGTCCATCGAGAATGAGGGGTCACCTGTGTAAGGCTGTAATTTGGGGAGGAGAACATTGTGTGAAGCTGGCATTTTATGTCACACATCCAGGTTCCTTCGAATAGTGTCCGGAATAGGAGAAATCGGAAAAAAGAGAATCGTCGMGTGTGCAGATGTAAATGTTATACATCAAAGCGGTACCAGGACATCTGTCCGGTCATAAACGGACATGGACGAAAGCGGAGAAGAAAATGAGTTATTATAATAAGGTCGGGGGTCCTGCCCGTCCAGAATTGGATGTTGGGGAAACAAGAGGATCAACGTCAAAGTGTGATCTACACATTTTTCATGCATAATGATGTTTCCATATGCATACACATGTATGATAATTATCAATACAATTGGGCAATTCGTATTGCGAGCAAAAAAATTAATTAAAATAGTGTACAAAAAGTGGGCGCCGACATGATGAATATAACGGAGGTAGGCGGGCGCCGCCATCACAGGCTGGATGCAACAAAAAGTAGTTAATTTGTACTATGGGATTCGATTCGTTTTTCCGATGATGATCGAACACAGCAATTGATCCATTGAAATTGTAGGAAGAGTAGTAGGAAAATCAACGGGAAACGAGAGAGATATGCGGCAAGTATGATGGGTGGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>385 363 94 91 44 23</canonical_bands>
                <polymorphic_bands>429 363 94 91 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTCCTTCGAATAGTGTCC</pcr_primer_p1>
		<pcr_primer_p2>ATTATGCATGAAAAATGTGTAGAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGTTCCTTCGAATAGTGTCCGGAATAGGAGAAATCGGAAAAAAGAGAATCGTCGAGTGTGCAGATGTAAATGTTATACATCAAAGCGGTACCAGGACATCTGTCCGGTCATAAACGGACATGGACGAAAGCGGAGAAGAAAATGAGTTATTATAATAAGGTCGGGGGTCCTGCCCGTCCAGAATTGGATGTTGGGGAAACAAGAGGATCAACGTCAAAGTGTGATCTACACATTTTTCATGCATAAT</canonical_amplicon>
		<polymorphic_amplicon>GGTTCCTTCGAATAGTGTCCGGAATAGGAGAAATCGGAAAAAAGAGAATCGTCGMGTGTGCAGATGTAAATGTTATACATCAAAGCGGTACCAGGACATCTGTCCGGTCATAAACGGACATGGACGAAAGCGGAGAAGAAAATGAGTTATTATAATAAGGTCGGGGGTCCTGCCCGTCCAGAATTGGATGTTGGGGAAACAAGAGGATCAACGTCAAAGTGTGATCTACACATTTTTCATGCATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12516</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>531825</contig_pos>
        <strand>+</strand>
        <context>AGAGGTAAGA[A/C]AAGTCACCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGCCTTCTTCATTTTCTTATATTCTCTTTTTGTTTCTGAAGAGGTAAGA</left_flank>
        <right_flank>AAGTCACCTTAATTCTACCAAATCCTGACAGCTGTCCACTTCAGCGCGAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGGGAAAAGAATGAAGAAGGGGAAAGAAGGGGGAAAATTGAATTTCGGCAAGAAAAAGAAAAGTCCGTTCTAGACAACAACGTGTTCTCTCTTCAAATCCAAATATGAAATGGCTTCAGTTGAGAATGCAGACAGAAAAAAAAGGTGGGTCGCCGTTCAACCTCTTCTGCCCCTCTATTCACCTGTCAACATGCATTTGTCTTGGGATACCAATTTCAGGTATGACGGCGAAATAGAGGTGCAGCATCAAGAGAAGTGTAGGGGTGGCAAATCAAACCAAAATGAGATGAATCCTTCGTGTTGCGAAGTGAAGAAAATGAGAGGAGAAGAAGAAAGAAGAAGGGAAGAAGATGGGAGTCGGAAGGAAGGATAGTTGGCTACCAATGGGTTTCGCGGCTGCTAATATAAACAACGTCCACTCAAAACTTTTCTTCAAGAAACGATTCTATGCCTTCTTCATTTTCTTATATTCTCTTTTTGTTTCTGAAGAGGTAAGAAAAGTCACCTTAATTCTACCAAATCCTGACAGCTGTCCACTTCAGCGCGAGTGAAATAACAGCTGCCAGGAGGAGAAGAAGGTCGCAAAGAAGTCCATCGAGAATGAGGGGTCACCTGTGTAAGGCTGTAATTTGGGGAGGAGAACATTGTGTGAAGCTGGCATTTTATGTCACACATCCAGGTTCCTTCGAATAGTGTCCGGAATAGGAGAAATCGGAAAAAAGAGAATCGTCGAGTGTGCAGATGTAAATGTTATACATCAAAGCGGTACCAGGACATCTGTCCGGTCATAAACGGACATGGACGAAAGCGGAGAAGAAAATGAGTTATTATAATAAGGTCGGGGGTCCTGCCCGTCCAGAATTGGATGTTGGGGAAACAAGAGGATCAACGTCAAAGTGTGATCTACACATTTTTCATGCATAATGATGTTTCCATATGCATACACATGTATGATAATTATCAATACAATTGGGCAATTCGTATTGCGAGCAAAAAAA</canonical>
            <polymorphic>AGTGGGAAAAGAATGAAGAAGGGGAAAGAAGGGGGAAAATTGAATTTCGGCAAGAAAAAGAAAAGTCCGTTCTAGACAACAACGTGTTCTCTCTTCAAATCCAAATATGAAATGGCTTCAGTTGAGAATGCAGACAGAAAAAAAAGGTGGGTCGCCGTTCAACCTCTTCTGCCCCTCTATTCACCTGTCAACATGCATTTGTCTTGGGATACCAATTTCAGGTATGACGGCGAAATAGAGGTGCAGCATCAAGAGAAGTGTAGGGGTGGCAAATCAAACCAAAATGAGATGAATCCTTCGTGTTGCGAAGTGAAGAAAATGAGAGGAGAAGAAGAAAGAAGAAGGGAAGAAGATGGGAGTCGGAAGGAAGGATAGTTGGCTACCAATGGGTTTCGCGGCTGCTAATATAAACAACGTCCACTCAAAACTTTTCTTCAAGAAACGATTCTATGCCTTCTTCATTTTCTTATATTCTCTTTTTGTTTCTGAAGAGGTAAGAMAAGTCACCTTAATTCTACCAAATCCTGACAGCTGTCCACTTCAGCGCGAGTGAAATAACAGCTGCCAGGAGGAGAAGAAGGTCGCAAAGAAGTCCATCGAGAATGAGGGGTCACCTGTGTAAGGCTGTAATTTGGGGAGGAGAACATTGTGTGAAGCTGGCATTTTATGTCACACATCCAGGTTCCTTCGAATAGTGTCCGGAATAGGAGAAATCGGAAAAAAGAGAATCGTCGAGTGTGCAGATGTAAATGTTATACATCAAAGCGGTACCAGGACATCTGTCCGGTCATAAACGGACATGGACGAAAGCGGAGAAGAAAATGAGTTATTATAATAAGGTCGGGGGTCCTGCCCGTCCAGAATTGGATGTTGGGGAAACAAGAGGATCAACGTCAAAGTGTGATCTACACATTTTTCATGCATAATGATGTTTCCATATGCATACACATGTATGATAATTATCAATACAATTGGGCAATTCGTATTGCGAGCAAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATGCCTTCTTCATTTTCTTA</pcr_primer_p1>
		<pcr_primer_p2>ACCTGGATGTGTGACATAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>TCTATGCCTTCTTCATTTTCTTATATTCTCTTTTTGTTTCTGAAGAGGTAAGAAAAGTCACCTTAATTCTACCAAATCCTGACAGCTGTCCACTTCAGCGCGAGTGAAATAACAGCTGCCAGGAGGAGAAGAAGGTCGCAAAGAAGTCCATCGAGAATGAGGGGTCACCTGTGTAAGGCTGTAATTTGGGGAGGAGAACATTGTGTGAAGCTGGCATTTTATGTCACACATCCAGGT</canonical_amplicon>
		<polymorphic_amplicon>TCTATGCCTTCTTCATTTTCTTATATTCTCTTTTTGTTTCTGAAGAGGTAAGAMAAGTCACCTTAATTCTACCAAATCCTGACAGCTGTCCACTTCAGCGCGAGTGAAATAACAGCTGCCAGGAGGAGAAGAAGGTCGCAAAGAAGTCCATCGAGAATGAGGGGTCACCTGTGTAAGGCTGTAATTTGGGGAGGAGAACATTGTGTGAAGCTGGCATTTTATGTCACACATCCAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12517</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>531654</contig_pos>
        <strand></strand>
        <context>ATGAGAGGAG[A/T]AGAAGAAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCAAAATGAGATGAATCCTTCGTGTTGCGAAGTGAAGAAAATGAGAGGAG</left_flank>
        <right_flank>AGAAGAAAGAAGAAGGGAAGAAGATGGGAGTCGGAAGGAAGGATAGTTGG</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAGAGCCCACCGCTCTCTATTTTTATTTCACAAAGCCCATGAAAATCCTTGAACTTTAACCACTTGTGAAGTAGGACGAACAATACAACGAGAAACTTTGATTTCGATAGCAGCTAAGCACACACAATCATTTATGTGAATCCACACTTAATTTCTCAAAGTTTATGGAAGTGGGAAAAGAATGAAGAAGGGGAAAGAAGGGGGAAAATTGAATTTCGGCAAGAAAAAGAAAAGTCCGTTCTAGACAACAACGTGTTCTCTCTTCAAATCCAAATATGAAATGGCTTCAGTTGAGAATGCAGACAGAAAAAAAAGGTGGGTCGCCGTTCAACCTCTTCTGCCCCTCTATTCACCTGTCAACATGCATTTGTCTTGGGATACCAATTTCAGGTATGACGGCGAAATAGAGGTGCAGCATCAAGAGAAGTGTAGGGGTGGCAAATCAAACCAAAATGAGATGAATCCTTCGTGTTGCGAAGTGAAGAAAATGAGAGGAGAAGAAGAAAGAAGAAGGGAAGAAGATGGGAGTCGGAAGGAAGGATAGTTGGCTACCAATGGGTTTCGCGGCTGCTAATATAAACAACGTCCACTCAAAACTTTTCTTCAAGAAACGATTCTATGCCTTCTTCATTTTCTTATATTCTCTTTTTGTTTCTGAAGAGGTAAGAAAAGTCACCTTAATTCTACCAAATCCTGACAGCTGTCCACTTCAGCGCGAGTGAAATAACAGCTGCCAGGAGGAGAAGAAGGTCGCAAAGAAGTCCATCGAGAATGAGGGGTCACCTGTGTAAGGCTGTAATTTGGGGAGGAGAACATTGTGTGAAGCTGGCATTTTATGTCACACATCCAGGTTCCTTCGAATAGTGTCCGGAATAGGAGAAATCGGAAAAAAGAGAATCGTCGAGTGTGCAGATGTAAATGTTATACATCAAAGCGGTACCAGGACATCTGTCCGGTCATAAACGGACATGGACGAAAGCGGAGAAGAAAATGAGTTA</canonical>
            <polymorphic>CTCAGAGCCCACCGCTCTCTATTTTTATTTCACAAAGCCCATGAAAATCCTTGAACTTTAACCACTTGTGAAGTAGGACGAACAATACAACGAGAAACTTTGATTTCGATAGCAGCTAAGCACACACAATCATTTATGTGAATCCACACTTAATTTCTCAAAGTTTATGGAAGTGGGAAAAGAATGAAGAAGGGGAAAGAAGGGGGAAAATTGAATTTCGGCAAGAAAAAGAAAAGTCCGTTCTAGACAACAACGTGTTCTCTCTTCAAATCCAAATATGAAATGGCTTCAGTTGAGAATGCAGACAGAAAAAAAAGGTGGGTCGCCGTTCAACCTCTTCTGCCCCTCTATTCACCTGTCAACATGCATTTGTCTTGGGATACCAATTTCAGGTATGACGGCGAAATAGAGGTGCAGCATCAAGAGAAGTGTAGGGGTGGCAAATCAAACCAAAATGAGATGAATCCTTCGTGTTGCGAAGTGAAGAAAATGAGAGGAGWAGAAGAAAGAAGAAGGGAAGAAGATGGGAGTCGGAAGGAAGGATAGTTGGCTACCAATGGGTTTCGCGGCTGCTAATATAAACAACGTCCACTCAAAACTTTTCTTCAAGAAACGATTCTATGCCTTCTTCATTTTCTTATATTCTCTTTTTGTTTCTGAAGAGGTAAGAAAAGTCACCTTAATTCTACCAAATCCTGACAGCTGTCCACTTCAGCGCGAGTGAAATAACAGCTGCCAGGAGGAGAAGAAGGTCGCAAAGAAGTCCATCGAGAATGAGGGGTCACCTGTGTAAGGCTGTAATTTGGGGAGGAGAACATTGTGTGAAGCTGGCATTTTATGTCACACATCCAGGTTCCTTCGAATAGTGTCCGGAATAGGAGAAATCGGAAAAAAGAGAATCGTCGAGTGTGCAGATGTAAATGTTATACATCAAAGCGGTACCAGGACATCTGTCCGGTCATAAACGGACATGGACGAAAGCGGAGAAGAAAATGAGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGCATTTGTCTTGGGATAC</pcr_primer_p1>
		<pcr_primer_p2>CTTGAAGAAAAGTTTTGAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATGCATTTGTCTTGGGATACCAATTTCAGGTATGACGGCGAAATAGAGGTGCAGCATCAAGAGAAGTGTAGGGGTGGCAAATCAAACCAAAATGAGATGAATCCTTCGTGTTGCGAAGTGAAGAAAATGAGAGGAGAAGAAGAAAGAAGAAGGGAAGAAGATGGGAGTCGGAAGGAAGGATAGTTGGCTACCAATGGGTTTCGCGGCTGCTAATATAAACAACGTCCACTCAAAACTTTTCTTCAAG</canonical_amplicon>
		<polymorphic_amplicon>ATGCATTTGTCTTGGGATACCAATTTCAGGTATGACGGCGAAATAGAGGTGCAGCATCAAGAGAAGTGTAGGGGTGGCAAATCAAACCAAAATGAGATGAATCCTTCGTGTTGCGAAGTGAAGAAAATGAGAGGAGWAGAAGAAAGAAGAAGGGAAGAAGATGGGAGTCGGAAGGAAGGATAGTTGGCTACCAATGGGTTTCGCGGCTGCTAATATAAACAACGTCCACTCAAAACTTTTCTTCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12521</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>549619</contig_pos>
        <strand>+</strand>
        <context>TCTCACACCC[A/G]TTTTGGAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGTATAACTGTGTCGACAACTCTCCATTATCAGTCTACGTCTCACACCC</left_flank>
        <right_flank>TTTTGGAATTGGTTAGTAGAGGTGAGATAATTTTTAAGATAATAAAATCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTGAAATCGGAATACTCTCAATTTCCGAAATTTCGAAACTCGGAATTTTTGAAATCCCGAAAAAATTCTAAAAACGCCATTCCGAACATCCCTGGTTTTTCTATTCTTCCTCAAAAAAAATTCAGAAATTTTTTTCAACCTTAGCGGAGCGCACTTTCACTACCAGTTGTTTTTCTAGTGTAGTCCTCGTGGACAACTCCGATTCTATGTCTTATTGGTTTTACCTCGTTTCCGCCTCTTATAATCTCTTCTCGTGTCTTTTTCGTATTTTATCAGTCTCTAAATGTTACCTATTTCAGTACAAGACGTCGGTATGGGGTACGTAAAACAGGAAAAACACCCACTCGAATACGAATATTTACAACCGGAGCATTTGAAAGGATTCGATTCTTACAAGGTTTGCATTTTATAATGTTCACTTAATAGCCATAAAAGTGCATATTTTCAGTATAACTGTGTCGACAACTCTCCATTATCAGTCTACGTCTCACACCCGTTTTGGAATTGGTTAGTAGAGGTGAGATAATTTTTAAGATAATAAAATCAAAGAACTCTAATATATTTTCAGTTCTATCCACGAACATGGGTCCCGAACGTACTAACACTCGTTGGATGGGGATTCGTTATGGCTGGATTTTTCATCGAAGGCTATCTTGATTATCGAATTGACAGAAACTCCGACGGATCTTTGAATCCAATTCCAGATTGGTTCTGGTTCGCAGCTGCTCTTTGCACATTCCTTGGTCATACATTGGATGGAACAGATGGAAAACAATCTAGAAGAATTGGTGCAAGTGGTCCGACTGGAGAGCTTTGTAAGTTTTCAAACTCTTCAATATTTTGAAATAAAATTTGTTTTAGTCGATCATGGCCTCGATTCTTGGTCAACTGTTCCATTCACCATTACAATTTTCTCAATTTTCGGACGTGGAAGGTTCAGTATATCGTCTGTTGAACTGTTATGTGTGCTGATCAGTACACAAATCGTGTTCTTCA</canonical>
            <polymorphic>ATTTTTGAAATCGGAATACTCTCAATTTCCGAAATTTCGAAACTCGGAATTTTTGAAATCCCGAAAAAATTCTAAAAACGCCATTCCGAACATCCCTGGTTTTTCTATTCTTCCTCAAAAAAAATTCAGAAATTTTTTTCAACCTTAGCGGAGCGCACTTTCACTACCAGTTGTTTTTCTAGTGTAGTCCTCGTGGACAACTCCGATTCTATGTCTTATTGGTTTTACCTCGTTTCCGCCTCTTATAATCTCTTCTCGTGTCTTTTTCGTATTTTATCAGTCTCTAAATGTTACCTATTTCAGTACAAGACGTCGGTATGGGGTACGTAAAACAGGAAAAACACCCACTCGAATACGAATATTTACAACCGGAGCATTTGAAAGGATTCGATTCTTACAAGGTTTGCATTTTATAATGTTCACTTAATAGCCATAAAAGTGCATATTTTCAGTATAACTGTGTCGACAACTCTCCATTATCAGTCTACGTCTCACACCCRTTTTGGAATTGGTTAGTAGAGGTGAGATAATTTTTAAGATAATAAAATCAAAGAACTCTAATATATTTTCAGTTCTATCCACGAACATGGGTCCCGAACGTACTAACACTCGTTGGATGGGGATTCGTTATGGCTGGATTTTTCATCGAAGGCTATCTTGATTATCGAATTGACAGAAACTCCGACGGATCTTTGAATCCAATTCCAGATTGGTTCTGGTTCGCAGCTGCTCTTTGCACATTCCTTGGTCATACATTGGATGGAACAGATGGAAAACAATCTAGAAGAATTGGTGCAAGTGGTCCGACTGGAGAGCTTTGTAAGTTTTCAAACTCTTCAATATTTTGAAATAAAATTTGTTTTAGTCGATCATGGCCTCGATTCTTGGTCAACTGTTCCATTCACCATTACAATTTTCTCAATTTTCGGACGTGGAAGGTTCAGTATATCGTCTGTTGAACTGTTATGTGTGCTGATCAGTACACAAATCGTGTTCTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATAAAAGTGCATATTTTCAGTA</pcr_primer_p1>
		<pcr_primer_p2>AGTTTCTGTCAATTCGATAATCA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCATAAAAGTGCATATTTTCAGTATAACTGTGTCGACAACTCTCCATTATCAGTCTACGTCTCACACCCGTTTTGGAATTGGTTAGTAGAGGTGAGATAATTTTTAAGATAATAAAATCAAAGAACTCTAATATATTTTCAGTTCTATCCACGAACATGGGTCCCGAACGTACTAACACTCGTTGGATGGGGATTCGTTATGGCTGGATTTTTCATCGAAGGCTATCTTGATTATCGAATTGACAGAAACT</canonical_amplicon>
		<polymorphic_amplicon>CCATAAAAGTGCATATTTTCAGTATAACTGTGTCGACAACTCTCCATTATCAGTCTACGTCTCACACCCRTTTTGGAATTGGTTAGTAGAGGTGAGATAATTTTTAAGATAATAAAATCAAAGAACTCTAATATATTTTCAGTTCTATCCACGAACATGGGTCCCGAACGTACTAACACTCGTTGGATGGGGATTCGTTATGGCTGGATTTTTCATCGAAGGCTATCTTGATTATCGAATTGACAGAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12522</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>549774</contig_pos>
        <strand>+</strand>
        <context>ATCGAAGGCT[A/G]TCTTGATTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACACTCGTTGGATGGGGATTCGTTATGGCTGGATTTTTCATCGAAGGCT</left_flank>
        <right_flank>TCTTGATTATCGAATTGACAGAAACTCCGACGGATCTTTGAATCCAATTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTTTCACTACCAGTTGTTTTTCTAGTGTAGTCCTCGTGGACAACTCCGATTCTATGTCTTATTGGTTTTACCTCGTTTCCGCCTCTTATAATCTCTTCTCGTGTCTTTTTCGTATTTTATCAGTCTCTAAATGTTACCTATTTCAGTACAAGACGTCGGTATGGGGTACGTAAAACAGGAAAAACACCCACTCGAATACGAATATTTACAACCGGAGCATTTGAAAGGATTCGATTCTTACAAGGTTTGCATTTTATAATGTTCACTTAATAGCCATAAAAGTGCATATTTTCAGTATAACTGTGTCGACAACTCTCCATTATCAGTCTACGTCTCACACCCGTTTTGGAATTGGTTAGTAGAGGTGAGATAATTTTTAAGATAATAAAATCAAAGAACTCTAATATATTTTCAGTTCTATCCACGAACATGGGTCCCGAACGTACTAACACTCGTTGGATGGGGATTCGTTATGGCTGGATTTTTCATCGAAGGCTATCTTGATTATCGAATTGACAGAAACTCCGACGGATCTTTGAATCCAATTCCAGATTGGTTCTGGTTCGCAGCTGCTCTTTGCACATTCCTTGGTCATACATTGGATGGAACAGATGGAAAACAATCTAGAAGAATTGGTGCAAGTGGTCCGACTGGAGAGCTTTGTAAGTTTTCAAACTCTTCAATATTTTGAAATAAAATTTGTTTTAGTCGATCATGGCCTCGATTCTTGGTCAACTGTTCCATTCACCATTACAATTTTCTCAATTTTCGGACGTGGAAGGTTCAGTATATCGTCTGTTGAACTGTTATGTGTGCTGATCAGTACACAAATCGTGTTCTTCACCACACATTGGGAGAAGTACAATACTGGAATCATGTTCTTGTCCTGGGCCTACGATGTCAGCCAATTTGTAAGAGTGTTGAAAATCTCTATAATTTGAATGCTCTGTTTTTTTCAGGGTCTCGTTATTGTGTACCTCTGGACCTACGTCGTCGGT</canonical>
            <polymorphic>CACTTTCACTACCAGTTGTTTTTCTAGTGTAGTCCTCGTGGACAACTCCGATTCTATGTCTTATTGGTTTTACCTCGTTTCCGCCTCTTATAATCTCTTCTCGTGTCTTTTTCGTATTTTATCAGTCTCTAAATGTTACCTATTTCAGTACAAGACGTCGGTATGGGGTACGTAAAACAGGAAAAACACCCACTCGAATACGAATATTTACAACCGGAGCATTTGAAAGGATTCGATTCTTACAAGGTTTGCATTTTATAATGTTCACTTAATAGCCATAAAAGTGCATATTTTCAGTATAACTGTGTCGACAACTCTCCATTATCAGTCTACGTCTCACACCCGTTTTGGAATTGGTTAGTAGAGGTGAGATAATTTTTAAGATAATAAAATCAAAGAACTCTAATATATTTTCAGTTCTATCCACGAACATGGGTCCCGAACGTACTAACACTCGTTGGATGGGGATTCGTTATGGCTGGATTTTTCATCGAAGGCTRTCTTGATTATCGAATTGACAGAAACTCCGACGGATCTTTGAATCCAATTCCAGATTGGTTCTGGTTCGCAGCTGCTCTTTGCACATTCCTTGGTCATACATTGGATGGAACAGATGGAAAACAATCTAGAAGAATTGGTGCAAGTGGTCCGACTGGAGAGCTTTGTAAGTTTTCAAACTCTTCAATATTTTGAAATAAAATTTGTTTTAGTCGATCATGGCCTCGATTCTTGGTCAACTGTTCCATTCACCATTACAATTTTCTCAATTTTCGGACGTGGAAGGTTCAGTATATCGTCTGTTGAACTGTTATGTGTGCTGATCAGTACACAAATCGTGTTCTTCACCACACATTGGGAGAAGTACAATACTGGAATCATGTTCTTGTCCTGGGCCTACGATGTCAGCCAATTTGTAAGAGTGTTGAAAATCTCTATAATTTGAATGCTCTGTTTTTTTCAGGGTCTCGTTATTGTGTACCTCTGGACCTACGTCGTCGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACTCTCCATTATCAGTCTACG</pcr_primer_p1>
		<pcr_primer_p2>AATCTGGAATTGGATTCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CAACTCTCCATTATCAGTCTACGTCTCACACCCGTTTTGGAATTGGTTAGTAGAGGTGAGATAATTTTTAAGATAATAAAATCAAAGAACTCTAATATATTTTCAGTTCTATCCACGAACATGGGTCCCGAACGTACTAACACTCGTTGGATGGGGATTCGTTATGGCTGGATTTTTCATCGAAGGCTATCTTGATTATCGAATTGACAGAAACTCCGACGGATCTTTGAATCCAATTCCAGATT</canonical_amplicon>
		<polymorphic_amplicon>CAACTCTCCATTATCAGTCTACGTCTCACACCCGTTTTGGAATTGGTTAGTAGAGGTGAGATAATTTTTAAGATAATAAAATCAAAGAACTCTAATATATTTTCAGTTCTATCCACGAACATGGGTCCCGAACGTACTAACACTCGTTGGATGGGGATTCGTTATGGCTGGATTTTTCATCGAAGGCTRTCTTGATTATCGAATTGACAGAAACTCCGACGGATCTTTGAATCCAATTCCAGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12523</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>549803</contig_pos>
        <strand>+</strand>
        <context>CAGAAACTCC[A/G]ACGGATCTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGGATTTTTCATCGAAGGCTATCTTGATTATCGAATTGACAGAAACTCC</left_flank>
        <right_flank>ACGGATCTTTGAATCCAATTCCAGATTGGTTCTGGTTCGCAGCTGCTCTT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGTCCTCGTGGACAACTCCGATTCTATGTCTTATTGGTTTTACCTCGTTTCCGCCTCTTATAATCTCTTCTCGTGTCTTTTTCGTATTTTATCAGTCTCTAAATGTTACCTATTTCAGTACAAGACGTCGGTATGGGGTACGTAAAACAGGAAAAACACCCACTCGAATACGAATATTTACAACCGGAGCATTTGAAAGGATTCGATTCTTACAAGGTTTGCATTTTATAATGTTCACTTAATAGCCATAAAAGTGCATATTTTCAGTATAACTGTGTCGACAACTCTCCATTATCAGTCTACGTCTCACACCCGTTTTGGAATTGGTTAGTAGAGGTGAGATAATTTTTAAGATAATAAAATCAAAGAACTCTAATATATTTTCAGTTCTATCCACGAACATGGGTCCCGAACGTACTAACACTCGTTGGATGGGGATTCGTTATGGCTGGATTTTTCATCGAAGGCTATCTTGATTATCGAATTGACAGAAACTCCGACGGATCTTTGAATCCAATTCCAGATTGGTTCTGGTTCGCAGCTGCTCTTTGCACATTCCTTGGTCATACATTGGATGGAACAGATGGAAAACAATCTAGAAGAATTGGTGCAAGTGGTCCGACTGGAGAGCTTTGTAAGTTTTCAAACTCTTCAATATTTTGAAATAAAATTTGTTTTAGTCGATCATGGCCTCGATTCTTGGTCAACTGTTCCATTCACCATTACAATTTTCTCAATTTTCGGACGTGGAAGGTTCAGTATATCGTCTGTTGAACTGTTATGTGTGCTGATCAGTACACAAATCGTGTTCTTCACCACACATTGGGAGAAGTACAATACTGGAATCATGTTCTTGTCCTGGGCCTACGATGTCAGCCAATTTGTAAGAGTGTTGAAAATCTCTATAATTTGAATGCTCTGTTTTTTTCAGGGTCTCGTTATTGTGTACCTCTGGACCTACGTCGTCGGTTACAAATGGTTCCATTTTGATTTGTTTGG</canonical>
            <polymorphic>TAGTCCTCGTGGACAACTCCGATTCTATGTCTTATTGGTTTTACCTCGTTTCCGCCTCTTATAATCTCTTCTCGTGTCTTTTTCGTATTTTATCAGTCTCTAAATGTTACCTATTTCAGTACAAGACGTCGGTATGGGGTACGTAAAACAGGAAAAACACCCACTCGAATACGAATATTTACAACCGGAGCATTTGAAAGGATTCGATTCTTACAAGGTTTGCATTTTATAATGTTCACTTAATAGCCATAAAAGTGCATATTTTCAGTATAACTGTGTCGACAACTCTCCATTATCAGTCTACGTCTCACACCCGTTTTGGAATTGGTTAGTAGAGGTGAGATAATTTTTAAGATAATAAAATCAAAGAACTCTAATATATTTTCAGTTCTATCCACGAACATGGGTCCCGAACGTACTAACACTCGTTGGATGGGGATTCGTTATGGCTGGATTTTTCATCGAAGGCTATCTTGATTATCGAATTGACAGAAACTCCRACGGATCTTTGAATCCAATTCCAGATTGGTTCTGGTTCGCAGCTGCTCTTTGCACATTCCTTGGTCATACATTGGATGGAACAGATGGAAAACAATCTAGAAGAATTGGTGCAAGTGGTCCGACTGGAGAGCTTTGTAAGTTTTCAAACTCTTCAATATTTTGAAATAAAATTTGTTTTAGTCGATCATGGCCTCGATTCTTGGTCAACTGTTCCATTCACCATTACAATTTTCTCAATTTTCGGACGTGGAAGGTTCAGTATATCGTCTGTTGAACTGTTATGTGTGCTGATCAGTACACAAATCGTGTTCTTCACCACACATTGGGAGAAGTACAATACTGGAATCATGTTCTTGTCCTGGGCCTACGATGTCAGCCAATTTGTAAGAGTGTTGAAAATCTCTATAATTTGAATGCTCTGTTTTTTTCAGGGTCTCGTTATTGTGTACCTCTGGACCTACGTCGTCGGTTACAAATGGTTCCATTTTGATTTGTTTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>479 256 123 122 20</canonical_bands>
                <polymorphic_bands>601 256 123 20</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>463 372 131 34</canonical_bands>
                <polymorphic_bands>835 131 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGTTAGTAGAGGTGAGATAATTT</pcr_primer_p1>
		<pcr_primer_p2>CAATGTATGACCAAGGAATGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGGTTAGTAGAGGTGAGATAATTTTTAAGATAATAAAATCAAAGAACTCTAATATATTTTCAGTTCTATCCACGAACATGGGTCCCGAACGTACTAACACTCGTTGGATGGGGATTCGTTATGGCTGGATTTTTCATCGAAGGCTATCTTGATTATCGAATTGACAGAAACTCCGACGGATCTTTGAATCCAATTCCAGATTGGTTCTGGTTCGCAGCTGCTCTTTGCACATTCCTTGGTCATACATTG</canonical_amplicon>
		<polymorphic_amplicon>TTGGTTAGTAGAGGTGAGATAATTTTTAAGATAATAAAATCAAAGAACTCTAATATATTTTCAGTTCTATCCACGAACATGGGTCCCGAACGTACTAACACTCGTTGGATGGGGATTCGTTATGGCTGGATTTTTCATCGAAGGCTATCTTGATTATCGAATTGACAGAAACTCCRACGGATCTTTGAATCCAATTCCAGATTGGTTCTGGTTCGCAGCTGCTCTTTGCACATTCCTTGGTCATACATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12524</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>552153</contig_pos>
        <strand>+</strand>
        <context>TTTCTATTGT[C/T]TAGAAAGTAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTCAGATTATCAAGATTTCGAGGTGTTTCAATTTACATTTTTCTATTGT</left_flank>
        <right_flank>TAGAAAGTACTGTTTTTTTTTCAAATTTCACATTTTCTGAGAGCTACTGT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGTGAGAATTCAATTTTCCGCAGAGAAGACCTCTAAAGAAATGGCTGTTCATCAGAATTCTTTTCATTTAGAAAATTCGAATCGTGTCATTTCTGGATGATTTGTCTTTCCAAAAACTTGAATTTTCATTTTCGAGGTACCAGCCTTGGGTTTCCTGGTTACAAAATCATCGTAAGTAGTTAATAACATGTATTATCTATTGGCTATAAATAGGAAAATTGGTAGCTGTAATTGCCACGTTGCGTTGTTTTCTCAAGCATGAAACTTGAATTTAATAGTCGTCTATTCGGTGTCCACCAGATTGACACTTTGCCCAATTTTCAAAATATAAGTTTTTTCAAAACTTTTGAGACTCCGATATTCTCATAATCTTTTAACTTCGAAATAGTGGACTTTACATTTTGATATCTTGAGACTCTGAAATCATGAAATCTTGAAACTTTGAAAGTTCAGATTATCAAGATTTCGAGGTGTTTCAATTTACATTTTTCTATTGTCTAGAAAGTACTGTTTTTTTTTCAAATTTCACATTTTCTGAGAGCTACTGTGAATGGTGCCCTGAATATGCACTGAAATATTACATCGAATATTACTCTAGCTGACTGGAACATACTTTTACAGTATCCAAAGAGTTCATTTGACCTCTACATCCCTTCGAATTCTCAGAATAGGATTATTCAAGTACCCTTCAAAAAAGTATGTATTTTTTTATCCGACGAATTATGTTTCTCACCAAATTCTTCCTCATGTCTTTCCGCTCATTCCAAATTGGATGCACATAAAAAAATCAAAAGTGTTGACTCGCTTCCGTGTCTGCGTCTCTTCATCTCGCATACTATTTCGAGGTTCCATGTTCCCATCATAAATCGGATGTAAATGGCCCAGTTGGCAGGGGAGATGCTTTTTCGACTGGCTTCTCGAAAATGTTCTCACTAGTTTTTTGTGAGTTCTTCTTATTTTCTTTTTTAACCTCCCCAGGGACATTTTTTGTCAGTTTC</canonical>
            <polymorphic>TGAGTGAGAATTCAATTTTCCGCAGAGAAGACCTCTAAAGAAATGGCTGTTCATCAGAATTCTTTTCATTTAGAAAATTCGAATCGTGTCATTTCTGGATGATTTGTCTTTCCAAAAACTTGAATTTTCATTTTCGAGGTACCAGCCTTGGGTTTCCTGGTTACAAAATCATCGTAAGTAGTTAATAACATGTATTATCTATTGGCTATAAATAGGAAAATTGGTAGCTGTAATTGCCACGTTGCGTTGTTTTCTCAAGCATGAAACTTGAATTTAATAGTCGTCTATTCGGTGTCCACCAGATTGACACTTTGCCCAATTTTCAAAATATAAGTTTTTTCAAAACTTTTGAGACTCCGATATTCTCATAATCTTTTAACTTCGAAATAGTGGACTTTACATTTTGATATCTTGAGACTCTGAAATCATGAAATCTTGAAACTTTGAAAGTTCAGATTATCAAGATTTCGAGGTGTTTCAATTTACATTTTTCTATTGTYTAGAAAGTACTGTTTTTTTTTCAAATTTCACATTTTCTGAGAGCTACTGTGAATGGTGCCCTGAATATGCACTGAAATATTACATCGAATATTACTCTAGCTGACTGGAACATACTTTTACAGTATCCAAAGAGTTCATTTGACCTCTACATCCCTTCGAATTCTCAGAATAGGATTATTCAAGTACCCTTCAAAAAAGTATGTATTTTTTTATCCGACGAATTATGTTTCTCACCAAATTCTTCCTCATGTCTTTCCGCTCATTCCAAATTGGATGCACATAAAAAAATCAAAAGTGTTGACTCGCTTCCGTGTCTGCGTCTCTTCATCTCGCATACTATTTCGAGGTTCCATGTTCCCATCATAAATCGGATGTAAATGGCCCAGTTGGCAGGGGAGATGCTTTTTCGACTGGCTTCTCGAAAATGTTCTCACTAGTTTTTTGTGAGTTCTTCTTATTTTCTTTTTTAACCTCCCCAGGGACATTTTTTGTCAGTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 338 97 65</canonical_bands>
                <polymorphic_bands>597 338 65</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>419 316 95 81 39 26 16 8</canonical_bands>
                <polymorphic_bands>458 316 95 81 26 16 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTTTTGAGACTCCGATATTCT</pcr_primer_p1>
		<pcr_primer_p2>TCGATGTAATATTTCAGTGCATA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AACTTTTGAGACTCCGATATTCTCATAATCTTTTAACTTCGAAATAGTGGACTTTACATTTTGATATCTTGAGACTCTGAAATCATGAAATCTTGAAACTTTGAAAGTTCAGATTATCAAGATTTCGAGGTGTTTCAATTTACATTTTTCTATTGTCTAGAAAGTACTGTTTTTTTTTCAAATTTCACATTTTCTGAGAGCTACTGTGAATGGTGCCCTGAATATGCACTGAAATATTACATCGA</canonical_amplicon>
		<polymorphic_amplicon>AACTTTTGAGACTCCGATATTCTCATAATCTTTTAACTTCGAAATAGTGGACTTTACATTTTGATATCTTGAGACTCTGAAATCATGAAATCTTGAAACTTTGAAAGTTCAGATTATCAAGATTTCGAGGTGTTTCAATTTACATTTTTCTATTGTYTAGAAAGTACTGTTTTTTTTTCAAATTTCACATTTTCTGAGAGCTACTGTGAATGGTGCCCTGAATATGCACTGAAATATTACATCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12525</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>552084</contig_pos>
        <strand>+</strand>
        <context>TGAAATCATG[A/G]AATCTTGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGAAATAGTGGACTTTACATTTTGATATCTTGAGACTCTGAAATCATG</left_flank>
        <right_flank>AATCTTGAAACTTTGAAAGTTCAGATTATCAAGATTTCGAGGTGTTTCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCAGAAGACACCTTCCGAAAATAACATTTTGTTGCAAATGTTTCAAGTTGTTTATTTTTAGACGAATTTGAGTGAGAATTCAATTTTCCGCAGAGAAGACCTCTAAAGAAATGGCTGTTCATCAGAATTCTTTTCATTTAGAAAATTCGAATCGTGTCATTTCTGGATGATTTGTCTTTCCAAAAACTTGAATTTTCATTTTCGAGGTACCAGCCTTGGGTTTCCTGGTTACAAAATCATCGTAAGTAGTTAATAACATGTATTATCTATTGGCTATAAATAGGAAAATTGGTAGCTGTAATTGCCACGTTGCGTTGTTTTCTCAAGCATGAAACTTGAATTTAATAGTCGTCTATTCGGTGTCCACCAGATTGACACTTTGCCCAATTTTCAAAATATAAGTTTTTTCAAAACTTTTGAGACTCCGATATTCTCATAATCTTTTAACTTCGAAATAGTGGACTTTACATTTTGATATCTTGAGACTCTGAAATCATGAAATCTTGAAACTTTGAAAGTTCAGATTATCAAGATTTCGAGGTGTTTCAATTTACATTTTTCTATTGTCTAGAAAGTACTGTTTTTTTTTCAAATTTCACATTTTCTGAGAGCTACTGTGAATGGTGCCCTGAATATGCACTGAAATATTACATCGAATATTACTCTAGCTGACTGGAACATACTTTTACAGTATCCAAAGAGTTCATTTGACCTCTACATCCCTTCGAATTCTCAGAATAGGATTATTCAAGTACCCTTCAAAAAAGTATGTATTTTTTTATCCGACGAATTATGTTTCTCACCAAATTCTTCCTCATGTCTTTCCGCTCATTCCAAATTGGATGCACATAAAAAAATCAAAAGTGTTGACTCGCTTCCGTGTCTGCGTCTCTTCATCTCGCATACTATTTCGAGGTTCCATGTTCCCATCATAAATCGGATGTAAATGGCCCAGTTGGCAGGGGAGATGCTTTTTCGACTGGCTTCTCGAAAATGTTC</canonical>
            <polymorphic>ACCAGAAGACACCTTCCGAAAATAACATTTTGTTGCAAATGTTTCAAGTTGTTTATTTTTAGACGAATTTGAGTGAGAATTCAATTTTCCGCAGAGAAGACCTCTAAAGAAATGGCTGTTCATCAGAATTCTTTTCATTTAGAAAATTCGAATCGTGTCATTTCTGGATGATTTGTCTTTCCAAAAACTTGAATTTTCATTTTCGAGGTACCAGCCTTGGGTTTCCTGGTTACAAAATCATCGTAAGTAGTTAATAACATGTATTATCTATTGGCTATAAATAGGAAAATTGGTAGCTGTAATTGCCACGTTGCGTTGTTTTCTCAAGCATGAAACTTGAATTTAATAGTCGTCTATTCGGTGTCCACCAGATTGACACTTTGCCCAATTTTCAAAATATAAGTTTTTTCAAAACTTTTGAGACTCCGATATTCTCATAATCTTTTAACTTCGAAATAGTGGACTTTACATTTTGATATCTTGAGACTCTGAAATCATGRAATCTTGAAACTTTGAAAGTTCAGATTATCAAGATTTCGAGGTGTTTCAATTTACATTTTTCTATTGTCTAGAAAGTACTGTTTTTTTTTCAAATTTCACATTTTCTGAGAGCTACTGTGAATGGTGCCCTGAATATGCACTGAAATATTACATCGAATATTACTCTAGCTGACTGGAACATACTTTTACAGTATCCAAAGAGTTCATTTGACCTCTACATCCCTTCGAATTCTCAGAATAGGATTATTCAAGTACCCTTCAAAAAAGTATGTATTTTTTTATCCGACGAATTATGTTTCTCACCAAATTCTTCCTCATGTCTTTCCGCTCATTCCAAATTGGATGCACATAAAAAAATCAAAAGTGTTGACTCGCTTCCGTGTCTGCGTCTCTTCATCTCGCATACTATTTCGAGGTTCCATGTTCCCATCATAAATCGGATGTAAATGGCCCAGTTGGCAGGGGAGATGCTTTTTCGACTGGCTTCTCGAAAATGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>419 316 164 39 26 16 12 8</canonical_bands>
                <polymorphic_bands>419 316 164 39 26 24 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTTTTGAGACTCCGATATTCT</pcr_primer_p1>
		<pcr_primer_p2>TCGATGTAATATTTCAGTGCATA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AACTTTTGAGACTCCGATATTCTCATAATCTTTTAACTTCGAAATAGTGGACTTTACATTTTGATATCTTGAGACTCTGAAATCATGAAATCTTGAAACTTTGAAAGTTCAGATTATCAAGATTTCGAGGTGTTTCAATTTACATTTTTCTATTGTCTAGAAAGTACTGTTTTTTTTTCAAATTTCACATTTTCTGAGAGCTACTGTGAATGGTGCCCTGAATATGCACTGAAATATTACATCGA</canonical_amplicon>
		<polymorphic_amplicon>AACTTTTGAGACTCCGATATTCTCATAATCTTTTAACTTCGAAATAGTGGACTTTACATTTTGATATCTTGAGACTCTGAAATCATGRAATCTTGAAACTTTGAAAGTTCAGATTATCAAGATTTCGAGGTGTTTCAATTTACATTTTTCTATTGTCTAGAAAGTACTGTTTTTTTTTCAAATTTCACATTTTCTGAGAGCTACTGTGAATGGTGCCCTGAATATGCACTGAAATATTACATCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12526</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>551986</contig_pos>
        <strand>+</strand>
        <context>TCAAAATATA[A/T]GTTTTTTCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCTATTCGGTGTCCACCAGATTGACACTTTGCCCAATTTTCAAAATATA</left_flank>
        <right_flank>GTTTTTTCAAAACTTTTGAGACTCCGATATTCTCATAATCTTTTAACTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAAGGCGCACTTTTCATTGAATTTTTCTATGGGAAACTATTGAAAAGAGAAGAAATACACATCTTCGCGAAGAACTTCTTTCAATTTTCTTTGGGGACCAGAAGACACCTTCCGAAAATAACATTTTGTTGCAAATGTTTCAAGTTGTTTATTTTTAGACGAATTTGAGTGAGAATTCAATTTTCCGCAGAGAAGACCTCTAAAGAAATGGCTGTTCATCAGAATTCTTTTCATTTAGAAAATTCGAATCGTGTCATTTCTGGATGATTTGTCTTTCCAAAAACTTGAATTTTCATTTTCGAGGTACCAGCCTTGGGTTTCCTGGTTACAAAATCATCGTAAGTAGTTAATAACATGTATTATCTATTGGCTATAAATAGGAAAATTGGTAGCTGTAATTGCCACGTTGCGTTGTTTTCTCAAGCATGAAACTTGAATTTAATAGTCGTCTATTCGGTGTCCACCAGATTGACACTTTGCCCAATTTTCAAAATATAAGTTTTTTCAAAACTTTTGAGACTCCGATATTCTCATAATCTTTTAACTTCGAAATAGTGGACTTTACATTTTGATATCTTGAGACTCTGAAATCATGAAATCTTGAAACTTTGAAAGTTCAGATTATCAAGATTTCGAGGTGTTTCAATTTACATTTTTCTATTGTCTAGAAAGTACTGTTTTTTTTTCAAATTTCACATTTTCTGAGAGCTACTGTGAATGGTGCCCTGAATATGCACTGAAATATTACATCGAATATTACTCTAGCTGACTGGAACATACTTTTACAGTATCCAAAGAGTTCATTTGACCTCTACATCCCTTCGAATTCTCAGAATAGGATTATTCAAGTACCCTTCAAAAAAGTATGTATTTTTTTATCCGACGAATTATGTTTCTCACCAAATTCTTCCTCATGTCTTTCCGCTCATTCCAAATTGGATGCACATAAAAAAATCAAAAGTGTTGACTCGCTTCCGTGTCTGCGTCTCTTCATCTCG</canonical>
            <polymorphic>TATAAGGCGCACTTTTCATTGAATTTTTCTATGGGAAACTATTGAAAAGAGAAGAAATACACATCTTCGCGAAGAACTTCTTTCAATTTTCTTTGGGGACCAGAAGACACCTTCCGAAAATAACATTTTGTTGCAAATGTTTCAAGTTGTTTATTTTTAGACGAATTTGAGTGAGAATTCAATTTTCCGCAGAGAAGACCTCTAAAGAAATGGCTGTTCATCAGAATTCTTTTCATTTAGAAAATTCGAATCGTGTCATTTCTGGATGATTTGTCTTTCCAAAAACTTGAATTTTCATTTTCGAGGTACCAGCCTTGGGTTTCCTGGTTACAAAATCATCGTAAGTAGTTAATAACATGTATTATCTATTGGCTATAAATAGGAAAATTGGTAGCTGTAATTGCCACGTTGCGTTGTTTTCTCAAGCATGAAACTTGAATTTAATAGTCGTCTATTCGGTGTCCACCAGATTGACACTTTGCCCAATTTTCAAAATATAWGTTTTTTCAAAACTTTTGAGACTCCGATATTCTCATAATCTTTTAACTTCGAAATAGTGGACTTTACATTTTGATATCTTGAGACTCTGAAATCATGAAATCTTGAAACTTTGAAAGTTCAGATTATCAAGATTTCGAGGTGTTTCAATTTACATTTTTCTATTGTCTAGAAAGTACTGTTTTTTTTTCAAATTTCACATTTTCTGAGAGCTACTGTGAATGGTGCCCTGAATATGCACTGAAATATTACATCGAATATTACTCTAGCTGACTGGAACATACTTTTACAGTATCCAAAGAGTTCATTTGACCTCTACATCCCTTCGAATTCTCAGAATAGGATTATTCAAGTACCCTTCAAAAAAGTATGTATTTTTTTATCCGACGAATTATGTTTCTCACCAAATTCTTCCTCATGTCTTTCCGCTCATTCCAAATTGGATGCACATAAAAAAATCAAAAGTGTTGACTCGCTTCCGTGTCTGCGTCTCTTCATCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTCCTGGTTACAAAATCATC</pcr_primer_p1>
		<pcr_primer_p2>TCCACTATTTCGAAGTTAAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GTTTCCTGGTTACAAAATCATCGTAAGTAGTTAATAACATGTATTATCTATTGGCTATAAATAGGAAAATTGGTAGCTGTAATTGCCACGTTGCGTTGTTTTCTCAAGCATGAAACTTGAATTTAATAGTCGTCTATTCGGTGTCCACCAGATTGACACTTTGCCCAATTTTCAAAATATAAGTTTTTTCAAAACTTTTGAGACTCCGATATTCTCATAATCTTTTAACTTCGAAATAGTGGA</canonical_amplicon>
		<polymorphic_amplicon>GTTTCCTGGTTACAAAATCATCGTAAGTAGTTAATAACATGTATTATCTATTGGCTATAAATAGGAAAATTGGTAGCTGTAATTGCCACGTTGCGTTGTTTTCTCAAGCATGAAACTTGAATTTAATAGTCGTCTATTCGGTGTCCACCAGATTGACACTTTGCCCAATTTTCAAAATATAWGTTTTTTCAAAACTTTTGAGACTCCGATATTCTCATAATCTTTTAACTTCGAAATAGTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12527</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>551943</contig_pos>
        <strand>+</strand>
        <context>GTCGTCTATT[C/G]GGTGTCCACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGTTGCGTTGTTTTCTCAAGCATGAAACTTGAATTTAATAGTCGTCTATT</left_flank>
        <right_flank>GGTGTCCACCAGATTGACACTTTGCCCAATTTTCAAAATATAAGTTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGGGTGGTGCTCTGGTGTGAGCATATGTTTACTCTCACCTTATAAGGCGCACTTTTCATTGAATTTTTCTATGGGAAACTATTGAAAAGAGAAGAAATACACATCTTCGCGAAGAACTTCTTTCAATTTTCTTTGGGGACCAGAAGACACCTTCCGAAAATAACATTTTGTTGCAAATGTTTCAAGTTGTTTATTTTTAGACGAATTTGAGTGAGAATTCAATTTTCCGCAGAGAAGACCTCTAAAGAAATGGCTGTTCATCAGAATTCTTTTCATTTAGAAAATTCGAATCGTGTCATTTCTGGATGATTTGTCTTTCCAAAAACTTGAATTTTCATTTTCGAGGTACCAGCCTTGGGTTTCCTGGTTACAAAATCATCGTAAGTAGTTAATAACATGTATTATCTATTGGCTATAAATAGGAAAATTGGTAGCTGTAATTGCCACGTTGCGTTGTTTTCTCAAGCATGAAACTTGAATTTAATAGTCGTCTATTCGGTGTCCACCAGATTGACACTTTGCCCAATTTTCAAAATATAAGTTTTTTCAAAACTTTTGAGACTCCGATATTCTCATAATCTTTTAACTTCGAAATAGTGGACTTTACATTTTGATATCTTGAGACTCTGAAATCATGAAATCTTGAAACTTTGAAAGTTCAGATTATCAAGATTTCGAGGTGTTTCAATTTACATTTTTCTATTGTCTAGAAAGTACTGTTTTTTTTTCAAATTTCACATTTTCTGAGAGCTACTGTGAATGGTGCCCTGAATATGCACTGAAATATTACATCGAATATTACTCTAGCTGACTGGAACATACTTTTACAGTATCCAAAGAGTTCATTTGACCTCTACATCCCTTCGAATTCTCAGAATAGGATTATTCAAGTACCCTTCAAAAAAGTATGTATTTTTTTATCCGACGAATTATGTTTCTCACCAAATTCTTCCTCATGTCTTTCCGCTCATTCCAAATTGGATGCACATAAAAAAAT</canonical>
            <polymorphic>TTTGGGGTGGTGCTCTGGTGTGAGCATATGTTTACTCTCACCTTATAAGGCGCACTTTTCATTGAATTTTTCTATGGGAAACTATTGAAAAGAGAAGAAATACACATCTTCGCGAAGAACTTCTTTCAATTTTCTTTGGGGACCAGAAGACACCTTCCGAAAATAACATTTTGTTGCAAATGTTTCAAGTTGTTTATTTTTAGACGAATTTGAGTGAGAATTCAATTTTCCGCAGAGAAGACCTCTAAAGAAATGGCTGTTCATCAGAATTCTTTTCATTTAGAAAATTCGAATCGTGTCATTTCTGGATGATTTGTCTTTCCAAAAACTTGAATTTTCATTTTCGAGGTACCAGCCTTGGGTTTCCTGGTTACAAAATCATCGTAAGTAGTTAATAACATGTATTATCTATTGGCTATAAATAGGAAAATTGGTAGCTGTAATTGCCACGTTGCGTTGTTTTCTCAAGCATGAAACTTGAATTTAATAGTCGTCTATTSGGTGTCCACCAGATTGACACTTTGCCCAATTTTCAAAATATAAGTTTTTTCAAAACTTTTGAGACTCCGATATTCTCATAATCTTTTAACTTCGAAATAGTGGACTTTACATTTTGATATCTTGAGACTCTGAAATCATGAAATCTTGAAACTTTGAAAGTTCAGATTATCAAGATTTCGAGGTGTTTCAATTTACATTTTTCTATTGTCTAGAAAGTACTGTTTTTTTTTCAAATTTCACATTTTCTGAGAGCTACTGTGAATGGTGCCCTGAATATGCACTGAAATATTACATCGAATATTACTCTAGCTGACTGGAACATACTTTTACAGTATCCAAAGAGTTCATTTGACCTCTACATCCCTTCGAATTCTCAGAATAGGATTATTCAAGTACCCTTCAAAAAAGTATGTATTTTTTTATCCGACGAATTATGTTTCTCACCAAATTCTTCCTCATGTCTTTCCGCTCATTCCAAATTGGATGCACATAAAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTCCTGGTTACAAAATCATC</pcr_primer_p1>
		<pcr_primer_p2>TCCACTATTTCGAAGTTAAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GTTTCCTGGTTACAAAATCATCGTAAGTAGTTAATAACATGTATTATCTATTGGCTATAAATAGGAAAATTGGTAGCTGTAATTGCCACGTTGCGTTGTTTTCTCAAGCATGAAACTTGAATTTAATAGTCGTCTATTCGGTGTCCACCAGATTGACACTTTGCCCAATTTTCAAAATATAAGTTTTTTCAAAACTTTTGAGACTCCGATATTCTCATAATCTTTTAACTTCGAAATAGTGGA</canonical_amplicon>
		<polymorphic_amplicon>GTTTCCTGGTTACAAAATCATCGTAAGTAGTTAATAACATGTATTATCTATTGGCTATAAATAGGAAAATTGGTAGCTGTAATTGCCACGTTGCGTTGTTTTCTCAAGCATGAAACTTGAATTTAATAGTCGTCTATTSGGTGTCCACCAGATTGACACTTTGCCCAATTTTCAAAATATAAGTTTTTTCAAAACTTTTGAGACTCCGATATTCTCATAATCTTTTAACTTCGAAATAGTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12528</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>551802</contig_pos>
        <strand>+</strand>
        <context>GTACCAGCCT[G/T]GGGTTTCCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGATTTGTCTTTCCAAAAACTTGAATTTTCATTTTCGAGGTACCAGCCT</left_flank>
        <right_flank>GGGTTTCCTGGTTACAAAATCATCGTAAGTAGTTAATAACATGTATTATC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCGGAGATTCGCCTGCCAACATCACTCGCTTCCTAGAGTGCATTTCGGAAGGCGGAAATGGGCCGTCTAATTGTTTTGGCATGCAAGTGGCATTTTCGCGGTGCCTATTTTTACTTTTTACTACTACTACTACGCCTATTTTGGGGTGGTGCTCTGGTGTGAGCATATGTTTACTCTCACCTTATAAGGCGCACTTTTCATTGAATTTTTCTATGGGAAACTATTGAAAAGAGAAGAAATACACATCTTCGCGAAGAACTTCTTTCAATTTTCTTTGGGGACCAGAAGACACCTTCCGAAAATAACATTTTGTTGCAAATGTTTCAAGTTGTTTATTTTTAGACGAATTTGAGTGAGAATTCAATTTTCCGCAGAGAAGACCTCTAAAGAAATGGCTGTTCATCAGAATTCTTTTCATTTAGAAAATTCGAATCGTGTCATTTCTGGATGATTTGTCTTTCCAAAAACTTGAATTTTCATTTTCGAGGTACCAGCCTTGGGTTTCCTGGTTACAAAATCATCGTAAGTAGTTAATAACATGTATTATCTATTGGCTATAAATAGGAAAATTGGTAGCTGTAATTGCCACGTTGCGTTGTTTTCTCAAGCATGAAACTTGAATTTAATAGTCGTCTATTCGGTGTCCACCAGATTGACACTTTGCCCAATTTTCAAAATATAAGTTTTTTCAAAACTTTTGAGACTCCGATATTCTCATAATCTTTTAACTTCGAAATAGTGGACTTTACATTTTGATATCTTGAGACTCTGAAATCATGAAATCTTGAAACTTTGAAAGTTCAGATTATCAAGATTTCGAGGTGTTTCAATTTACATTTTTCTATTGTCTAGAAAGTACTGTTTTTTTTTCAAATTTCACATTTTCTGAGAGCTACTGTGAATGGTGCCCTGAATATGCACTGAAATATTACATCGAATATTACTCTAGCTGACTGGAACATACTTTTACAGTATCCAAAGAGTTCATTTGACCTCTA</canonical>
            <polymorphic>GTTCGGAGATTCGCCTGCCAACATCACTCGCTTCCTAGAGTGCATTTCGGAAGGCGGAAATGGGCCGTCTAATTGTTTTGGCATGCAAGTGGCATTTTCGCGGTGCCTATTTTTACTTTTTACTACTACTACTACGCCTATTTTGGGGTGGTGCTCTGGTGTGAGCATATGTTTACTCTCACCTTATAAGGCGCACTTTTCATTGAATTTTTCTATGGGAAACTATTGAAAAGAGAAGAAATACACATCTTCGCGAAGAACTTCTTTCAATTTTCTTTGGGGACCAGAAGACACCTTCCGAAAATAACATTTTGTTGCAAATGTTTCAAGTTGTTTATTTTTAGACGAATTTGAGTGAGAATTCAATTTTCCGCAGAGAAGACCTCTAAAGAAATGGCTGTTCATCAGAATTCTTTTCATTTAGAAAATTCGAATCGTGTCATTTCTGGATGATTTGTCTTTCCAAAAACTTGAATTTTCATTTTCGAGGTACCAGCCTKGGGTTTCCTGGTTACAAAATCATCGTAAGTAGTTAATAACATGTATTATCTATTGGCTATAAATAGGAAAATTGGTAGCTGTAATTGCCACGTTGCGTTGTTTTCTCAAGCATGAAACTTGAATTTAATAGTCGTCTATTCGGTGTCCACCAGATTGACACTTTGCCCAATTTTCAAAATATAAGTTTTTTCAAAACTTTTGAGACTCCGATATTCTCATAATCTTTTAACTTCGAAATAGTGGACTTTACATTTTGATATCTTGAGACTCTGAAATCATGAAATCTTGAAACTTTGAAAGTTCAGATTATCAAGATTTCGAGGTGTTTCAATTTACATTTTTCTATTGTCTAGAAAGTACTGTTTTTTTTTCAAATTTCACATTTTCTGAGAGCTACTGTGAATGGTGCCCTGAATATGCACTGAAATATTACATCGAATATTACTCTAGCTGACTGGAACATACTTTTACAGTATCCAAAGAGTTCATTTGACCTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTAGACGAATTTGAGTGAGAA</pcr_primer_p1>
		<pcr_primer_p2>GCAATTACAGCTACCAATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTAGACGAATTTGAGTGAGAATTCAATTTTCCGCAGAGAAGACCTCTAAAGAAATGGCTGTTCATCAGAATTCTTTTCATTTAGAAAATTCGAATCGTGTCATTTCTGGATGATTTGTCTTTCCAAAAACTTGAATTTTCATTTTCGAGGTACCAGCCTTGGGTTTCCTGGTTACAAAATCATCGTAAGTAGTTAATAACATGTATTATCTATTGGCTATAAATAGGAAAATTGGTAGCTGTAATTGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTAGACGAATTTGAGTGAGAATTCAATTTTCCGCAGAGAAGACCTCTAAAGAAATGGCTGTTCATCAGAATTCTTTTCATTTAGAAAATTCGAATCGTGTCATTTCTGGATGATTTGTCTTTCCAAAAACTTGAATTTTCATTTTCGAGGTACCAGCCTKGGGTTTCCTGGTTACAAAATCATCGTAAGTAGTTAATAACATGTATTATCTATTGGCTATAAATAGGAAAATTGGTAGCTGTAATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12529</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>558071</contig_pos>
        <strand>+</strand>
        <context>AATTCAAACC[C/T]AAATTTTGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTGCCATTCTCTTCTTTGCTTATGAGACAATTTCTTCCGAATTCAAACC</left_flank>
        <right_flank>AAATTTTGCTGATTTTCTATTTCTATTTTTAAACGACGAGTGTATTATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCATCCGTTTTCTGGAAAAAAAAATTTCGGGTTTCCTAGAAAGTGTGAACTCGAAGGACCCTGAAATATTGTGCCTCTTATTGTTATTCTCTCTTCTTCTTCTTTTTGTTTTTTCTCATAAAATTCAGAATTCTACTGAACCGGACATTTTGAATAGACGAGGAGTTTTTCAAGTGTTTTATATATTCCTCTTCCTTCTTTATTTGATAATTCATTAGCTTTTACTCTTTCTACATATGTTCATCATCTTCTTCTTCTTCGTCTTCTGCTTATTCCAACGTCATCTCTCATTTACTATGATTCATTTATCACTTCCAAACATCGTTTCCATTAAATAAGACCCTCCTCTCTTTTCTTCTCGCTTTCACACCCAAAATTACCGAGCTTTTGGTCTTCTTTTCTCTTTTAAATTAACGGGTGTCATCTCTCACTTCTCATTCCATGTTTTCGTGCCATTCTCTTCTTTGCTTATGAGACAATTTCTTCCGAATTCAAACCCAAATTTTGCTGATTTTCTATTTCTATTTTTAAACGACGAGTGTATTATTCTGATGGAAGAGAAAGGTCAGTGACCGTAGCCGAAGATCCCGCAACTACCGTAACCTGAAAAATTTTTCAACGGATTCTTGTTCTCGTTTTACTTTCAGCCGTGTTTTCTGTTATTTTTCCCAAAAAGAAAAGCGGAAAATAACAGTTTTTGATAGTGCAAAAAATTTACTGAAAACGAAAAAAAGAAAATAAACATATTATAGGTTACTGTAATTGTCGTTGTGGGACCTACGACCACGGGTATAGGCGTTTCTCTTCCAAAGATACGATTTCTTTTGTATTAGGTTCTTCGACAAAATAATTATGTTTCTTTTCTTTTTTCTTTGAATGTTTAGTTGAGACCATGTCACAATTCTATGTTCTTAAGGATGAATTCAACACACGATCATCTGAATAATGAAACAAAGGCGTTGGCGACTACAGAAGCCACTATATCAGAGGAAATGATGA</canonical>
            <polymorphic>TTCATCCGTTTTCTGGAAAAAAAAATTTCGGGTTTCCTAGAAAGTGTGAACTCGAAGGACCCTGAAATATTGTGCCTCTTATTGTTATTCTCTCTTCTTCTTCTTTTTGTTTTTTCTCATAAAATTCAGAATTCTACTGAACCGGACATTTTGAATAGACGAGGAGTTTTTCAAGTGTTTTATATATTCCTCTTCCTTCTTTATTTGATAATTCATTAGCTTTTACTCTTTCTACATATGTTCATCATCTTCTTCTTCTTCGTCTTCTGCTTATTCCAACGTCATCTCTCATTTACTATGATTCATTTATCACTTCCAAACATCGTTTCCATTAAATAAGACCCTCCTCTCTTTTCTTCTCGCTTTCACACCCAAAATTACCGAGCTTTTGGTCTTCTTTTCTCTTTTAAATTAACGGGTGTCATCTCTCACTTCTCATTCCATGTTTTCGTGCCATTCTCTTCTTTGCTTATGAGACAATTTCTTCCGAATTCAAACCYAAATTTTGCTGATTTTCTATTTCTATTTTTAAACGACGAGTGTATTATTCTGATGGAAGAGAAAGGTCAGTGACCGTAGCCGAAGATCCCGCAACTACCGTAACCTGAAAAATTTTTCAACGGATTCTTGTTCTCGTTTTACTTTCAGCCGTGTTTTCTGTTATTTTTCCCAAAAAGAAAAGCGGAAAATAACAGTTTTTGATAGTGCAAAAAATTTACTGAAAACGAAAAAAAGAAAATAAACATATTATAGGTTACTGTAATTGTCGTTGTGGGACCTACGACCACGGGTATAGGCGTTTCTCTTCCAAAGATACGATTTCTTTTGTATTAGGTTCTTCGACAAAATAATTATGTTTCTTTTCTTTTTTCTTTGAATGTTTAGTTGAGACCATGTCACAATTCTATGTTCTTAAGGATGAATTCAACACACGATCATCTGAATAATGAAACAAAGGCGTTGGCGACTACAGAAGCCACTATATCAGAGGAAATGATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTTCTCATTCCATGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATGGTCTCAACTAAACATTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>466</pcr_amplicon_size>
		<canonical_amplicon>CACTTCTCATTCCATGTTTTCGTGCCATTCTCTTCTTTGCTTATGAGACAATTTCTTCCGAATTCAAACCCAAATTTTGCTGATTTTCTATTTCTATTTTTAAACGACGAGTGTATTATTCTGATGGAAGAGAAAGGTCAGTGACCGTAGCCGAAGATCCCGCAACTACCGTAACCTGAAAAATTTTTCAACGGATTCTTGTTCTCGTTTTACTTTCAGCCGTGTTTTCTGTTATTTTTCCCAAAAAGAAAAGCGGAAAATAACAGTTTTTGATAGTGCAAAAAATTTACTGAAAACGAAAAAAAGAAAATAAACATATTATAGGTTACTGTAATTGTCGTTGTGGGACCTACGACCACGGGTATAGGCGTTTCTCTTCCAAAGATACGATTTCTTTTGTATTAGGTTCTTCGACAAAATAATTATGTTTCTTTTCTTTTTTCTTTGAATGTTTAGTTGAGACCAT</canonical_amplicon>
		<polymorphic_amplicon>CACTTCTCATTCCATGTTTTCGTGCCATTCTCTTCTTTGCTTATGAGACAATTTCTTCCGAATTCAAACCYAAATTTTGCTGATTTTCTATTTCTATTTTTAAACGACGAGTGTATTATTCTGATGGAAGAGAAAGGTCAGTGACCGTAGCCGAAGATCCCGCAACTACCGTAACCTGAAAAATTTTTCAACGGATTCTTGTTCTCGTTTTACTTTCAGCCGTGTTTTCTGTTATTTTTCCCAAAAAGAAAAGCGGAAAATAACAGTTTTTGATAGTGCAAAAAATTTACTGAAAACGAAAAAAAGAAAATAAACATATTATAGGTTACTGTAATTGTCGTTGTGGGACCTACGACCACGGGTATAGGCGTTTCTCTTCCAAAGATACGATTTCTTTTGTATTAGGTTCTTCGACAAAATAATTATGTTTCTTTTCTTTTTTCTTTGAATGTTTAGTTGAGACCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12530</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>558690</contig_pos>
        <strand>+</strand>
        <context>TAAACAACAA[A/T]AATTTTCAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAGGTAGGACGATTGACTCTTCTGGATCTCTATAAAAATTAAACAACAA</left_flank>
        <right_flank>AATTTTCAGAAGACATGGAATGGGCAACAGTCGGTGGTCGATTCGGCATG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGGATTCTTGTTCTCGTTTTACTTTCAGCCGTGTTTTCTGTTATTTTTCCCAAAAAGAAAAGCGGAAAATAACAGTTTTTGATAGTGCAAAAAATTTACTGAAAACGAAAAAAAGAAAATAAACATATTATAGGTTACTGTAATTGTCGTTGTGGGACCTACGACCACGGGTATAGGCGTTTCTCTTCCAAAGATACGATTTCTTTTGTATTAGGTTCTTCGACAAAATAATTATGTTTCTTTTCTTTTTTCTTTGAATGTTTAGTTGAGACCATGTCACAATTCTATGTTCTTAAGGATGAATTCAACACACGATCATCTGAATAATGAAACAAAGGCGTTGGCGACTACAGAAGCCACTATATCAGAGGAAATGATGAGGGAATGGTTTCAAAGTCAAATGGGAAAAGGGACTGGAGGGGGAAAAATACAAGCAATTGTTCCATTAGAAGGTAGGACGATTGACTCTTCTGGATCTCTATAAAAATTAAACAACAATAATTTTCAGAAGACATGGAATGGGCAACAGTCGGTGGTCGATTCGGCATGGCATACATTGCCTTCGGAATCCTAGCCATTCTCGTAAACATTGTCATATTTGTATGCATTTGTCTCCGTCGACGCACCACGTCTTCTCACGTCTTCTACATTATTATTCTGAATTTTTGTATAATTGACACTATCAAAGGTCGGTTTTTGACACTGATGTATTCAAATTGAAACCTAATTTTAGGAATATGCTCTGTTCTTTTTGCTTTGAAACTTCTTACCTTCAACATGGCAACCGATGCATCTATGTGGACAGTTCGAGTGGATCAGTATAGTGGAGTTCTTTTGAGATTCACCAATTTAACAACGATTATGAATGTTCTTCTGATCACCATGAATGAATTCATCTTCATTTGCTATCCGTTAAGATATTCTTGCATTGTTACAAGGTATTTTTAAAGATTCTTCCTTTTTACAGTTAGGTGAATTCAAATTTCAGATTCCGTGTTC</canonical>
            <polymorphic>ACGGATTCTTGTTCTCGTTTTACTTTCAGCCGTGTTTTCTGTTATTTTTCCCAAAAAGAAAAGCGGAAAATAACAGTTTTTGATAGTGCAAAAAATTTACTGAAAACGAAAAAAAGAAAATAAACATATTATAGGTTACTGTAATTGTCGTTGTGGGACCTACGACCACGGGTATAGGCGTTTCTCTTCCAAAGATACGATTTCTTTTGTATTAGGTTCTTCGACAAAATAATTATGTTTCTTTTCTTTTTTCTTTGAATGTTTAGTTGAGACCATGTCACAATTCTATGTTCTTAAGGATGAATTCAACACACGATCATCTGAATAATGAAACAAAGGCGTTGGCGACTACAGAAGCCACTATATCAGAGGAAATGATGAGGGAATGGTTTCAAAGTCAAATGGGAAAAGGGACTGGAGGGGGAAAAATACAAGCAATTGTTCCATTAGAAGGTAGGACGATTGACTCTTCTGGATCTCTATAAAAATTAAACAACAAWAATTTTCAGAAGACATGGAATGGGCAACAGTCGGTGGTCGATTCGGCATGGCATACATTGCCTTCGGAATCCTAGCCATTCTCGTAAACATTGTCATATTTGTATGCATTTGTCTCCGTCGACGCACCACGTCTTCTCACGTCTTCTACATTATTATTCTGAATTTTTGTATAATTGACACTATCAAAGGTCGGTTTTTGACACTGATGTATTCAAATTGAAACCTAATTTTAGGAATATGCTCTGTTCTTTTTGCTTTGAAACTTCTTACCTTCAACATGGCAACCGATGCATCTATGTGGACAGTTCGAGTGGATCAGTATAGTGGAGTTCTTTTGAGATTCACCAATTTAACAACGATTATGAATGTTCTTCTGATCACCATGAATGAATTCATCTTCATTTGCTATCCGTTAAGATATTCTTGCATTGTTACAAGGTATTTTTAAAGATTCTTCCTTTTTACAGTTAGGTGAATTCAAATTTCAGATTCCGTGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTAGAAGGTAGGACGATTGACT</pcr_primer_p1>
		<pcr_primer_p2>CGACCTTTGATAGTGTCAATTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTAGAAGGTAGGACGATTGACTCTTCTGGATCTCTATAAAAATTAAACAACAATAATTTTCAGAAGACATGGAATGGGCAACAGTCGGTGGTCGATTCGGCATGGCATACATTGCCTTCGGAATCCTAGCCATTCTCGTAAACATTGTCATATTTGTATGCATTTGTCTCCGTCGACGCACCACGTCTTCTCACGTCTTCTACATTATTATTCTGAATTTTTGTATAATTGACACTATCAAAGGTCG</canonical_amplicon>
		<polymorphic_amplicon>ATTAGAAGGTAGGACGATTGACTCTTCTGGATCTCTATAAAAATTAAACAACAAWAATTTTCAGAAGACATGGAATGGGCAACAGTCGGTGGTCGATTCGGCATGGCATACATTGCCTTCGGAATCCTAGCCATTCTCGTAAACATTGTCATATTTGTATGCATTTGTCTCCGTCGACGCACCACGTCTTCTCACGTCTTCTACATTATTATTCTGAATTTTTGTATAATTGACACTATCAAAGGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12531</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>559001</contig_pos>
        <strand>+</strand>
        <context>GGACAGTTCG[A/C]GTGGATCAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAACTTCTTACCTTCAACATGGCAACCGATGCATCTATGTGGACAGTTCG</left_flank>
        <right_flank>GTGGATCAGTATAGTGGAGTTCTTTTGAGATTCACCAATTTAACAACGAT</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACGATCATCTGAATAATGAAACAAAGGCGTTGGCGACTACAGAAGCCACTATATCAGAGGAAATGATGAGGGAATGGTTTCAAAGTCAAATGGGAAAAGGGACTGGAGGGGGAAAAATACAAGCAATTGTTCCATTAGAAGGTAGGACGATTGACTCTTCTGGATCTCTATAAAAATTAAACAACAATAATTTTCAGAAGACATGGAATGGGCAACAGTCGGTGGTCGATTCGGCATGGCATACATTGCCTTCGGAATCCTAGCCATTCTCGTAAACATTGTCATATTTGTATGCATTTGTCTCCGTCGACGCACCACGTCTTCTCACGTCTTCTACATTATTATTCTGAATTTTTGTATAATTGACACTATCAAAGGTCGGTTTTTGACACTGATGTATTCAAATTGAAACCTAATTTTAGGAATATGCTCTGTTCTTTTTGCTTTGAAACTTCTTACCTTCAACATGGCAACCGATGCATCTATGTGGACAGTTCGAGTGGATCAGTATAGTGGAGTTCTTTTGAGATTCACCAATTTAACAACGATTATGAATGTTCTTCTGATCACCATGAATGAATTCATCTTCATTTGCTATCCGTTAAGATATTCTTGCATTGTTACAAGGTATTTTTAAAGATTCTTCCTTTTTACAGTTAGGTGAATTCAAATTTCAGATTCCGTGTTCTCTGTGCAATTGTTTTCAGTTGGTTGATTGCTTTAATGTTAACTATACTCAATATGCTAACCAGTACGAGACAACGAAGTGTTATGATTGATACGGATTGTGAAAATGGTATTCAAAAACAAAAATCCAAAAAATATAAATTATTTTATTTCAGAAAGCCTGATCAACGCTTCATTCTGTATCAAACACCAAGAGACTTCTCTTTTTCATTATTTTGTCTTTCATATGGTTTTGATTGCTTTCTGCTTGATCTGCCTTGCAATCACTGCAAGCTGCTACTTCATTCTTTTTAGGTAACCCCTTATCTTTAT</canonical>
            <polymorphic>CACGATCATCTGAATAATGAAACAAAGGCGTTGGCGACTACAGAAGCCACTATATCAGAGGAAATGATGAGGGAATGGTTTCAAAGTCAAATGGGAAAAGGGACTGGAGGGGGAAAAATACAAGCAATTGTTCCATTAGAAGGTAGGACGATTGACTCTTCTGGATCTCTATAAAAATTAAACAACAATAATTTTCAGAAGACATGGAATGGGCAACAGTCGGTGGTCGATTCGGCATGGCATACATTGCCTTCGGAATCCTAGCCATTCTCGTAAACATTGTCATATTTGTATGCATTTGTCTCCGTCGACGCACCACGTCTTCTCACGTCTTCTACATTATTATTCTGAATTTTTGTATAATTGACACTATCAAAGGTCGGTTTTTGACACTGATGTATTCAAATTGAAACCTAATTTTAGGAATATGCTCTGTTCTTTTTGCTTTGAAACTTCTTACCTTCAACATGGCAACCGATGCATCTATGTGGACAGTTCGMGTGGATCAGTATAGTGGAGTTCTTTTGAGATTCACCAATTTAACAACGATTATGAATGTTCTTCTGATCACCATGAATGAATTCATCTTCATTTGCTATCCGTTAAGATATTCTTGCATTGTTACAAGGTATTTTTAAAGATTCTTCCTTTTTACAGTTAGGTGAATTCAAATTTCAGATTCCGTGTTCTCTGTGCAATTGTTTTCAGTTGGTTGATTGCTTTAATGTTAACTATACTCAATATGCTAACCAGTACGAGACAACGAAGTGTTATGATTGATACGGATTGTGAAAATGGTATTCAAAAACAAAAATCCAAAAAATATAAATTATTTTATTTCAGAAAGCCTGATCAACGCTTCATTCTGTATCAAACACCAAGAGACTTCTCTTTTTCATTATTTTGTCTTTCATATGGTTTTGATTGCTTTCTGCTTGATCTGCCTTGCAATCACTGCAAGCTGCTACTTCATTCTTTTTAGGTAACCCCTTATCTTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 228 189 81</canonical_bands>
                <polymorphic_bands>691 228 81</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTTGACACTGATGTATTCAA</pcr_primer_p1>
		<pcr_primer_p2>ATACCTTGTAACAATGCAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTTTGACACTGATGTATTCAAATTGAAACCTAATTTTAGGAATATGCTCTGTTCTTTTTGCTTTGAAACTTCTTACCTTCAACATGGCAACCGATGCATCTATGTGGACAGTTCGAGTGGATCAGTATAGTGGAGTTCTTTTGAGATTCACCAATTTAACAACGATTATGAATGTTCTTCTGATCACCATGAATGAATTCATCTTCATTTGCTATCCGTTAAGATATTCTTGCATTGTTACAAGGTAT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTTGACACTGATGTATTCAAATTGAAACCTAATTTTAGGAATATGCTCTGTTCTTTTTGCTTTGAAACTTCTTACCTTCAACATGGCAACCGATGCATCTATGTGGACAGTTCGMGTGGATCAGTATAGTGGAGTTCTTTTGAGATTCACCAATTTAACAACGATTATGAATGTTCTTCTGATCACCATGAATGAATTCATCTTCATTTGCTATCCGTTAAGATATTCTTGCATTGTTACAAGGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12532</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>559202</contig_pos>
        <strand>+</strand>
        <context>CTGTGCAATT[G/T]TTTTCAGTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTACAGTTAGGTGAATTCAAATTTCAGATTCCGTGTTCTCTGTGCAATT</left_flank>
        <right_flank>TTTTCAGTTGGTTGATTGCTTTAATGTTAACTATACTCAATATGCTAACC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATGGAATGGGCAACAGTCGGTGGTCGATTCGGCATGGCATACATTGCCTTCGGAATCCTAGCCATTCTCGTAAACATTGTCATATTTGTATGCATTTGTCTCCGTCGACGCACCACGTCTTCTCACGTCTTCTACATTATTATTCTGAATTTTTGTATAATTGACACTATCAAAGGTCGGTTTTTGACACTGATGTATTCAAATTGAAACCTAATTTTAGGAATATGCTCTGTTCTTTTTGCTTTGAAACTTCTTACCTTCAACATGGCAACCGATGCATCTATGTGGACAGTTCGAGTGGATCAGTATAGTGGAGTTCTTTTGAGATTCACCAATTTAACAACGATTATGAATGTTCTTCTGATCACCATGAATGAATTCATCTTCATTTGCTATCCGTTAAGATATTCTTGCATTGTTACAAGGTATTTTTAAAGATTCTTCCTTTTTACAGTTAGGTGAATTCAAATTTCAGATTCCGTGTTCTCTGTGCAATTGTTTTCAGTTGGTTGATTGCTTTAATGTTAACTATACTCAATATGCTAACCAGTACGAGACAACGAAGTGTTATGATTGATACGGATTGTGAAAATGGTATTCAAAAACAAAAATCCAAAAAATATAAATTATTTTATTTCAGAAAGCCTGATCAACGCTTCATTCTGTATCAAACACCAAGAGACTTCTCTTTTTCATTATTTTGTCTTTCATATGGTTTTGATTGCTTTCTGCTTGATCTGCCTTGCAATCACTGCAAGCTGCTACTTCATTCTTTTTAGGTAACCCCTTATCTTTATCTAAATTTCCATCTTTTTTTTAAATTTCAGAATAATTACGAAACTAGTTCGAGCTGATGTAAAATACCAAGTGGAAACTGACCTTCTCCGAGAAGAACATTCTCATGGGAAATCAATTGCTCGCCGGAAGAAATACGTTTTGATGATTGGAAGTGTCATTTTGGTGTATACAGTATACTTAACAACTTATGCAGTTATTCA</canonical>
            <polymorphic>ACATGGAATGGGCAACAGTCGGTGGTCGATTCGGCATGGCATACATTGCCTTCGGAATCCTAGCCATTCTCGTAAACATTGTCATATTTGTATGCATTTGTCTCCGTCGACGCACCACGTCTTCTCACGTCTTCTACATTATTATTCTGAATTTTTGTATAATTGACACTATCAAAGGTCGGTTTTTGACACTGATGTATTCAAATTGAAACCTAATTTTAGGAATATGCTCTGTTCTTTTTGCTTTGAAACTTCTTACCTTCAACATGGCAACCGATGCATCTATGTGGACAGTTCGAGTGGATCAGTATAGTGGAGTTCTTTTGAGATTCACCAATTTAACAACGATTATGAATGTTCTTCTGATCACCATGAATGAATTCATCTTCATTTGCTATCCGTTAAGATATTCTTGCATTGTTACAAGGTATTTTTAAAGATTCTTCCTTTTTACAGTTAGGTGAATTCAAATTTCAGATTCCGTGTTCTCTGTGCAATTKTTTTCAGTTGGTTGATTGCTTTAATGTTAACTATACTCAATATGCTAACCAGTACGAGACAACGAAGTGTTATGATTGATACGGATTGTGAAAATGGTATTCAAAAACAAAAATCCAAAAAATATAAATTATTTTATTTCAGAAAGCCTGATCAACGCTTCATTCTGTATCAAACACCAAGAGACTTCTCTTTTTCATTATTTTGTCTTTCATATGGTTTTGATTGCTTTCTGCTTGATCTGCCTTGCAATCACTGCAAGCTGCTACTTCATTCTTTTTAGGTAACCCCTTATCTTTATCTAAATTTCCATCTTTTTTTTAAATTTCAGAATAATTACGAAACTAGTTCGAGCTGATGTAAAATACCAAGTGGAAACTGACCTTCTCCGAGAAGAACATTCTCATGGGAAATCAATTGCTCGCCGGAAGAAATACGTTTTGATGATTGGAAGTGTCATTTTGGTGTATACAGTATACTTAACAACTTATGCAGTTATTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>495 418 87</canonical_bands>
                <polymorphic_bands>913 87</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTCCTTTTTACAGTTAGGTGA</pcr_primer_p1>
		<pcr_primer_p2>GAGAAGTCTCTTGGTGTTTGATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTTCCTTTTTACAGTTAGGTGAATTCAAATTTCAGATTCCGTGTTCTCTGTGCAATTGTTTTCAGTTGGTTGATTGCTTTAATGTTAACTATACTCAATATGCTAACCAGTACGAGACAACGAAGTGTTATGATTGATACGGATTGTGAAAATGGTATTCAAAAACAAAAATCCAAAAAATATAAATTATTTTATTTCAGAAAGCCTGATCAACGCTTCATTCTGTATCAAACACCAAGAGACTTCTC</canonical_amplicon>
		<polymorphic_amplicon>TCTTCCTTTTTACAGTTAGGTGAATTCAAATTTCAGATTCCGTGTTCTCTGTGCAATTKTTTTCAGTTGGTTGATTGCTTTAATGTTAACTATACTCAATATGCTAACCAGTACGAGACAACGAAGTGTTATGATTGATACGGATTGTGAAAATGGTATTCAAAAACAAAAATCCAAAAAATATAAATTATTTTATTTCAGAAAGCCTGATCAACGCTTCATTCTGTATCAAACACCAAGAGACTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12533</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>597166</contig_pos>
        <strand>+</strand>
        <context>TCCTCCTCCC[A/G]GGAAGAAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGATCATTGAGCATCGCATAATCATTCTGAAACTAGTCTCCTCCTCCC</left_flank>
        <right_flank>GGAAGAAGAAGAAAAAGACACACACACAACAATCGGGTTGTTGTCTTCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGCTAGACTTGGAGGAACACTTTTCTCTAGAAGCCCTAATCTATATATTCCATAAGATCATTTTGAAAATCTTTTCAAACTCAAAGTAGTCTGAAAACTTGTTTTCGTTAGATTTATCACAGAGGGAAATTTGTCAAATCAGAACCCTTTCAAAACGAGAGAAACATGAGTTTTGAGAGGTTTTAAAAGAGTTTTCTGATTATTTTTTTTTGATGATACATCCAAATATAGAAGCAGAGATTTGCCAGATTTTGTACTTTTGTCTTTTGAAAAAATAGAGAAATTTAGAGAGTCCCCTAGACGATATGGATCAAATATTTTGAATTCTGCTAGACTCTAGTAGCTACGAAATTCTATTTTTGCTAATGGTGCAGAAGAAAGAAGCAAAACAGGTTAGTTGGTGGGTTGTGAAGATATTCCATACGAAATCATCAGCATCAAAATTTGAAAAGATCATTGAGCATCGCATAATCATTCTGAAACTAGTCTCCTCCTCCCAGGAAGAAGAAGAAAAAGACACACACACAACAATCGGGTTGTTGTCTTCTTCTTTCTTCTTCTGATGGGACGACGACGACTACTAATTTCAGTTCTCGCCCCGAGAGAAGACACGTTTTCTAATTATTCTCCGCCGACGACGGCCGAGTGTCGGTCGGGAGCTTCGAGCTCACCGAGCATTACAAAATGATGCTCTTGTGGAAAAAAAGAACAAGAGGAGCAAAAAGAAATGAAGAAGATTTGGAGTTGCGTAAAGGATAAAAGATTATGCAAAGAAGAGATAAAACGTTCTGGATATCAGATTTGATTAAGAAATCCATTGGTAGATGTGAGAAGAAAGAGCTGAAAATCCAATAGAACCACAGGTGGAAATAATCAGAAAATAACAAAAAAGAAATACGAATTGATTGAAAATTGTTATTCATAGAAAAATCTAACTTATTTTAATATTAATTTTGGTTTTATCCCTCCGTTAAATTGTTTTTCTGCTCACACCAACTT</canonical>
            <polymorphic>TGGCTAGACTTGGAGGAACACTTTTCTCTAGAAGCCCTAATCTATATATTCCATAAGATCATTTTGAAAATCTTTTCAAACTCAAAGTAGTCTGAAAACTTGTTTTCGTTAGATTTATCACAGAGGGAAATTTGTCAAATCAGAACCCTTTCAAAACGAGAGAAACATGAGTTTTGAGAGGTTTTAAAAGAGTTTTCTGATTATTTTTTTTTGATGATACATCCAAATATAGAAGCAGAGATTTGCCAGATTTTGTACTTTTGTCTTTTGAAAAAATAGAGAAATTTAGAGAGTCCCCTAGACGATATGGATCAAATATTTTGAATTCTGCTAGACTCTAGTAGCTACGAAATTCTATTTTTGCTAATGGTGCAGAAGAAAGAAGCAAAACAGGTTAGTTGGTGGGTTGTGAAGATATTCCATACGAAATCATCAGCATCAAAATTTGAAAAGATCATTGAGCATCGCATAATCATTCTGAAACTAGTCTCCTCCTCCCRGGAAGAAGAAGAAAAAGACACACACACAACAATCGGGTTGTTGTCTTCTTCTTTCTTCTTCTGATGGGACGACGACGACTACTAATTTCAGTTCTCGCCCCGAGAGAAGACACGTTTTCTAATTATTCTCCGCCGACGACGGCCGAGTGTCGGTCGGGAGCTTCGAGCTCACCGAGCATTACAAAATGATGCTCTTGTGGAAAAAAAGAACAAGAGGAGCAAAAAGAAATGAAGAAGATTTGGAGTTGCGTAAAGGATAAAAGATTATGCAAAGAAGAGATAAAACGTTCTGGATATCAGATTTGATTAAGAAATCCATTGGTAGATGTGAGAAGAAAGAGCTGAAAATCCAATAGAACCACAGGTGGAAATAATCAGAAAATAACAAAAAAGAAATACGAATTGATTGAAAATTGTTATTCATAGAAAAATCTAACTTATTTTAATATTAATTTTGGTTTTATCCCTCCGTTAAATTGTTTTTCTGCTCACACCAACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGAAATTCTATTTTTGCTAATG</pcr_primer_p1>
		<pcr_primer_p2>CGAGAACTGAAATTAGTAGTCGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACGAAATTCTATTTTTGCTAATGGTGCAGAAGAAAGAAGCAAAACAGGTTAGTTGGTGGGTTGTGAAGATATTCCATACGAAATCATCAGCATCAAAATTTGAAAAGATCATTGAGCATCGCATAATCATTCTGAAACTAGTCTCCTCCTCCCAGGAAGAAGAAGAAAAAGACACACACACAACAATCGGGTTGTTGTCTTCTTCTTTCTTCTTCTGATGGGACGACGACGACTACTAATTTCAGTTCTCG</canonical_amplicon>
		<polymorphic_amplicon>ACGAAATTCTATTTTTGCTAATGGTGCAGAAGAAAGAAGCAAAACAGGTTAGTTGGTGGGTTGTGAAGATATTCCATACGAAATCATCAGCATCAAAATTTGAAAAGATCATTGAGCATCGCATAATCATTCTGAAACTAGTCTCCTCCTCCCRGGAAGAAGAAGAAAAAGACACACACACAACAATCGGGTTGTTGTCTTCTTCTTTCTTCTTCTGATGGGACGACGACGACTACTAATTTCAGTTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12534</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>648185</contig_pos>
        <strand>+</strand>
        <context>GAGGATGGTG[C/G]CTCTTTTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTCACAAGGCAGATTCGATCTGGATTTTGCACGTAGATATGAGGATGGTG</left_flank>
        <right_flank>CTCTTTTGAATTCTAAAAGTATTAAAGATTTTGACTAATTTATTCGGAGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAAATAGAAAAGGACAAGGTACAAAAAGAATAATAGAGGAATCAAGAATACGAGTCTTGGAACAACATGGTTATTTGAAGCCGGTTCGAGATTATGAAGCAATCAAAATCTTTCAGATCTAAGAATTCAATTTTTCAGAAGTTTCTAAAAAATGCACTTTCCAACGGAAGCCCCTGAAAACAGGTTCCTGACACGGGGAAAAAGGAGGAGGAGGAGATTATGAAGAAACTGAAAACGGCTTGAAAAGGGGGATTATTGATAAATAAGGAGCAAGGGGATATCAGTTGAATCCGTGGGCGCGAAAAATGAAGGAGTTGTTTGTTTTTGTTTTGGAAATTAGCAAAGAGATTATAATGTAAAAAATATGGAACAGGACTTAATCTCATTAGCTGACAATTAGCTGAGACTAGTTGAAATATGAGTAAGAGTTCAAGAATCGGAAATTGAGTCACAAGGCAGATTCGATCTGGATTTTGCACGTAGATATGAGGATGGTGGCTCTTTTGAATTCTAAAAGTATTAAAGATTTTGACTAATTTATTCGGAGTATCTATTAATCTGTCTGTTATTTTTCACAAAAGGAAAGTCGGAAAGTTAAAATTTTTACCCACGAATGCCACGAAAATGGAGAAAATAAATACAGAGAATATAAATAATTTTAGGTTACGGTAGTTTTCTGTTTAATAAGTCCAACTTGTTTCGAACCAGAATAACCTTCCTTATTAATAAAACGCTAGAGGCGTCTGTCCGTCCTCGTGTCCGTCTGTGGACTTTTGAAAAAATTGAAAATACATATATATATATATTTACGTGACCCTGAAAATGAAAATTGAAAATACATATATATATATATATATATATATATATTTTTACGTGACCCTTTTATTTAGAAAAAGTGAGAAACGAAGCGACGAACATTTGAAAAAAAATAGATTGAATCGCGCCGAAGGCGCACCAGCTTGCTGGTATAGAATATGAATTAAAACTTCTAGGTGGAA</canonical>
            <polymorphic>TGAAAATAGAAAAGGACAAGGTACAAAAAGAATAATAGAGGAATCAAGAATACGAGTCTTGGAACAACATGGTTATTTGAAGCCGGTTCGAGATTATGAAGCAATCAAAATCTTTCAGATCTAAGAATTCAATTTTTCAGAAGTTTCTAAAAAATGCACTTTCCAACGGAAGCCCCTGAAAACAGGTTCCTGACACGGGGAAAAAGGAGGAGGAGGAGATTATGAAGAAACTGAAAACGGCTTGAAAAGGGGGATTATTGATAAATAAGGAGCAAGGGGATATCAGTTGAATCCGTGGGCGCGAAAAATGAAGGAGTTGTTTGTTTTTGTTTTGGAAATTAGCAAAGAGATTATAATGTAAAAAATATGGAACAGGACTTAATCTCATTAGCTGACAATTAGCTGAGACTAGTTGAAATATGAGTAAGAGTTCAAGAATCGGAAATTGAGTCACAAGGCAGATTCGATCTGGATTTTGCACGTAGATATGAGGATGGTGSCTCTTTTGAATTCTAAAAGTATTAAAGATTTTGACTAATTTATTCGGAGTATCTATTAATCTGTCTGTTATTTTTCACAAAAGGAAAGTCGGAAAGTTAAAATTTTTACCCACGAATGCCACGAAAATGGAGAAAATAAATACAGAGAATATAAATAATTTTAGGTTACGGTAGTTTTCTGTTTAATAAGTCCAACTTGTTTCGAACCAGAATAACCTTCCTTATTAATAAAACGCTAGAGGCGTCTGTCCGTCCTCGTGTCCGTCTGTGGACTTTTGAAAAAATTGAAAATACATATATATATATATTTACGTGACCCTGAAAATGAAAATTGAAAATACATATATATATATATATATATATATATATTTTTACGTGACCCTTTTATTTAGAAAAAGTGAGAAACGAAGCGACGAACATTTGAAAAAAAATAGATTGAATCGCGCCGAAGGCGCACCAGCTTGCTGGTATAGAATATGAATTAAAACTTCTAGGTGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>460 151 98 90 82 68 40 11</canonical_bands>
                <polymorphic_bands>558 151 90 82 68 40 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAGTCACAAGGCAGATTC</pcr_primer_p1>
		<pcr_primer_p2>CGAAACAAGTTGGACTTATTAAA</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>TTGAGTCACAAGGCAGATTCGATCTGGATTTTGCACGTAGATATGAGGATGGTGGCTCTTTTGAATTCTAAAAGTATTAAAGATTTTGACTAATTTATTCGGAGTATCTATTAATCTGTCTGTTATTTTTCACAAAAGGAAAGTCGGAAAGTTAAAATTTTTACCCACGAATGCCACGAAAATGGAGAAAATAAATACAGAGAATATAAATAATTTTAGGTTACGGTAGTTTTCTGTTTAATAAGTCCAACTTGTTTCG</canonical_amplicon>
		<polymorphic_amplicon>TTGAGTCACAAGGCAGATTCGATCTGGATTTTGCACGTAGATATGAGGATGGTGSCTCTTTTGAATTCTAAAAGTATTAAAGATTTTGACTAATTTATTCGGAGTATCTATTAATCTGTCTGTTATTTTTCACAAAAGGAAAGTCGGAAAGTTAAAATTTTTACCCACGAATGCCACGAAAATGGAGAAAATAAATACAGAGAATATAAATAATTTTAGGTTACGGTAGTTTTCTGTTTAATAAGTCCAACTTGTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12535</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>649935</contig_pos>
        <strand>+</strand>
        <context>AACACGGTAT[A/T]TGAGAATCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGCTCAAAGTACATATCTAAGGTGGGCTTCTATTCGAGCAAACACGGTAT</left_flank>
        <right_flank>TGAGAATCAAACTCCATTCTTACCCATCATAAAAATTTATAGCCTCTATA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTGAATCTTCTTGACCTTTTCAATTAAAAAACTGGAGGAGAGAAAGAAGAACTGAAATTCAACACCTAGAGAGGAAAAGAGAAAAACAGCCAATCTTTGACTCATGATTCATGTTTTGTGGTAACATTCAGCTTGCGATTAAAAATTCTATGTATGAGCCTGATTACTTTTGAGAATATAAAGAGCTCTAAGCTGTTGGCGGCTGATGAAATTTGAATTTGATGAATTTTGGAACATCACAGAACTATCCTAGTTTTGATGAGTTCTAGAGATGCCTCTTTTTCTTGTTCCCACCTGTTACCGTACTTACTCTAATATGTCCACTTTGAGCTCAATTATCTCGATTTCTATGAGAGATATAAAAAATCTGTGAACTGATAAAACAATGACGATAGTATGATAAAAATTTTTTTGGACCGATATCTTTCAAAAGAACCGAGATAATTGAGCTCAAAGTACATATCTAAGGTGGGCTTCTATTCGAGCAAACACGGTATATGAGAATCAAACTCCATTCTTACCCATCATAAAAATTTATAGCCTCTATATTAGTTTGTGATATTTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGTGAAAGATGTCGTTCTATTAGAGGTTTTACGGTATTACCGGCAACTTGATATGCTCACACTATCAATTTTTAGGGATTAATTTTGTTGTGTAGCCACTATAAAAACACTAGAAACGACATTTTCTCTGGAATATAAATCACTGCAAATCACAAAACGAATGGTGGTTTTTCTGATCCTCCCTTCTCCAAATAATCATTCCAGGAAGTGTTTCTCTTCTGCTATCTCTATCCTTATCTTATTCTTTTTTTCTCTATCAGTTCAGAAAGGAGTCAGACAACCATCAGAGGACCGGAGAAGAGAGAAAGAGAAATGACAGTTCCGGCTTCATCTCACGCCATTCGTCTTTTTCTCTCTTTTCTCTTGAATT</canonical>
            <polymorphic>AACTGAATCTTCTTGACCTTTTCAATTAAAAAACTGGAGGAGAGAAAGAAGAACTGAAATTCAACACCTAGAGAGGAAAAGAGAAAAACAGCCAATCTTTGACTCATGATTCATGTTTTGTGGTAACATTCAGCTTGCGATTAAAAATTCTATGTATGAGCCTGATTACTTTTGAGAATATAAAGAGCTCTAAGCTGTTGGCGGCTGATGAAATTTGAATTTGATGAATTTTGGAACATCACAGAACTATCCTAGTTTTGATGAGTTCTAGAGATGCCTCTTTTTCTTGTTCCCACCTGTTACCGTACTTACTCTAATATGTCCACTTTGAGCTCAATTATCTCGATTTCTATGAGAGATATAAAAAATCTGTGAACTGATAAAACAATGACGATAGTATGATAAAAATTTTTTTGGACCGATATCTTTCAAAAGAACCGAGATAATTGAGCTCAAAGTACATATCTAAGGTGGGCTTCTATTCGAGCAAACACGGTATWTGAGAATCAAACTCCATTCTTACCCATCATAAAAATTTATAGCCTCTATATTAGTTTGTGATATTTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGTGAAAGATGTCGTTCTATTAGAGGTTTTACGGTATTACCGGCAACTTGATATGCTCACACTATCAATTTTTAGGGATTAATTTTGTTGTGTAGCCACTATAAAAACACTAGAAACGACATTTTCTCTGGAATATAAATCACTGCAAATCACAAAACGAATGGTGGTTTTTCTGATCCTCCCTTCTCCAAATAATCATTCCAGGAAGTGTTTCTCTTCTGCTATCTCTATCCTTATCTTATTCTTTTTTTCTCTATCAGTTCAGAAAGGAGTCAGACAACCATCAGAGGACCGGAGAAGAGAGAAAGAGAAATGACAGTTCCGGCTTCATCTCACGCCATTCGTCTTTTTCTCTCTTTTCTCTTGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACCTGTTACCGTACTTACTC</pcr_primer_p1>
		<pcr_primer_p2>CATATCAAGTTGCCGGTAATA</pcr_primer_p2>
		<pcr_amplicon_size>393</pcr_amplicon_size>
		<canonical_amplicon>CCACCTGTTACCGTACTTACTCTAATATGTCCACTTTGAGCTCAATTATCTCGATTTCTATGAGAGATATAAAAAATCTGTGAACTGATAAAACAATGACGATAGTATGATAAAAATTTTTTTGGACCGATATCTTTCAAAAGAACCGAGATAATTGAGCTCAAAGTACATATCTAAGGTGGGCTTCTATTCGAGCAAACACGGTATATGAGAATCAAACTCCATTCTTACCCATCATAAAAATTTATAGCCTCTATATTAGTTTGTGATATTTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGTGAAAGATGTCGTTCTATTAGAGGTTTTACGGTATTACCGGCAACTTGATATG</canonical_amplicon>
		<polymorphic_amplicon>CCACCTGTTACCGTACTTACTCTAATATGTCCACTTTGAGCTCAATTATCTCGATTTCTATGAGAGATATAAAAAATCTGTGAACTGATAAAACAATGACGATAGTATGATAAAAATTTTTTTGGACCGATATCTTTCAAAAGAACCGAGATAATTGAGCTCAAAGTACATATCTAAGGTGGGCTTCTATTCGAGCAAACACGGTATWTGAGAATCAAACTCCATTCTTACCCATCATAAAAATTTATAGCCTCTATATTAGTTTGTGATATTTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGTGAAAGATGTCGTTCTATTAGAGGTTTTACGGTATTACCGGCAACTTGATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12544</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>726725</contig_pos>
        <strand>+</strand>
        <context>GGGAAAAAAG[A/G]TACTGGGCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCGGTGAGAAAATCGAAGAAGAGAAAATTTTTGGCAAAGGGGAAAAAAG</left_flank>
        <right_flank>TACTGGGCACATTGAATGCTTTGGGATGCCATGAAAAAAAGAGGAACTAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAACGAAATTGAAAAATTGAGAATAAAAGAGCTAATCATTCAGAGAAGAAAACATGCGAAACCAAGCTAGAGAATCTCAGAAAACTGACGAGAAAAGAGAAGGGAAAAGATAGAGACCAAAGTGTACCCGGTGCACGGAGAACCACCGATTGTAGAGGTCAGAAATGATCCAGAATAGAAAAAAGAACACGACAGGCAATAGGGGGCGGAGAATCGTGTTGATGACAGGTGAAAGTTGTTTTCCTAGTTAGTGATACGGTATACCAATGATTCTTAGCTGTGACTGGCACAGAGACACTCGAAAAGTAATTCTAGCTGGATGAGAGGGAAGGTTCCAGATATCGCGTTCTCTGTTTATTTGAGTCTCTCGTCAAAATGCAATGTTTTCAAGATATCACATTTCATCGTTCCAACCTTTTGCCCATATTCCGACAGAGTTAGAATTTCATCCGGTGAGAAAATCGAAGAAGAGAAAATTTTTGGCAAAGGGGAAAAAAGGTACTGGGCACATTGAATGCTTTGGGATGCCATGAAAAAAAGAGGAACTACAGTAAGATACATATAGGCTGGTCTCAATTGAAAAGCTAGGAATTTTCAGAGAATTCTGAGAATACAAATTTTTCAATCTAGATCTGTTTTATAACCTCCGAAAATTTCAAACTGATCGGACACAGGGCAGTCGAGCTCTCGACTCGTGCACATAGTCAAAATCAACTGAACAACACATTTTTGTATCTTATCGGCTGGTACTGTATGTAGCGAGCCCTAGCGCAGTTCGTAATTTTCCGATCGAACGCAAATTAATAAGATCCGATCGAACAAACTATGCTGTTACAGAAAATCGGAACTATGAAGCCGCCGGTGGCAGCGACCGAAGAACCCACAACGACAACTGCCGTAGTTCAAAAATTTCTGTTCTCAGTATTCTTTTCTCAATTCTCGCTCCAATTCTTTCACTATCAAAAATTTTCAATTAGCGAATTTTCTGAATGAAAACAG</canonical>
            <polymorphic>TGAACGAAATTGAAAAATTGAGAATAAAAGAGCTAATCATTCAGAGAAGAAAACATGCGAAACCAAGCTAGAGAATCTCAGAAAACTGACGAGAAAAGAGAAGGGAAAAGATAGAGACCAAAGTGTACCCGGTGCACGGAGAACCACCGATTGTAGAGGTCAGAAATGATCCAGAATAGAAAAAAGAACACGACAGGCAATAGGGGGCGGAGAATCGTGTTGATGACAGGTGAAAGTTGTTTTCCTAGTTAGTGATACGGTATACCAATGATTCTTAGCTGTGACTGGCACAGAGACACTCGAAAAGTAATTCTAGCTGGATGAGAGGGAAGGTTCCAGATATCGCGTTCTCTGTTTATTTGAGTCTCTCGTCAAAATGCAATGTTTTCAAGATATCACATTTCATCGTTCCAACCTTTTGCCCATATTCCGACAGAGTTAGAATTTCATCCGGTGAGAAAATCGAAGAAGAGAAAATTTTTGGCAAAGGGGAAAAAAGRTACTGGGCACATTGAATGCTTTGGGATGCCATGAAAAAAAGAGGAACTACAGTAAGATACATATAGGCTGGTCTCAATTGAAAAGCTAGGAATTTTCAGAGAATTCTGAGAATACAAATTTTTCAATCTAGATCTGTTTTATAACCTCCGAAAATTTCAAACTGATCGGACACAGGGCAGTCGAGCTCTCGACTCGTGCACATAGTCAAAATCAACTGAACAACACATTTTTGTATCTTATCGGCTGGTACTGTATGTAGCGAGCCCTAGCGCAGTTCGTAATTTTCCGATCGAACGCAAATTAATAAGATCCGATCGAACAAACTATGCTGTTACAGAAAATCGGAACTATGAAGCCGCCGGTGGCAGCGACCGAAGAACCCACAACGACAACTGCCGTAGTTCAAAAATTTCTGTTCTCAGTATTCTTTTCTCAATTCTCGCTCCAATTCTTTCACTATCAAAAATTTTCAATTAGCGAATTTTCTGAATGAAAACAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>375 251 248 126</canonical_bands>
                <polymorphic_bands>623 251 126</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATATCGCGTTCTCTGTTTATT</pcr_primer_p1>
		<pcr_primer_p2>TTGAGACCAGCCTATATGTATCT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GATATCGCGTTCTCTGTTTATTTGAGTCTCTCGTCAAAATGCAATGTTTTCAAGATATCACATTTCATCGTTCCAACCTTTTGCCCATATTCCGACAGAGTTAGAATTTCATCCGGTGAGAAAATCGAAGAAGAGAAAATTTTTGGCAAAGGGGAAAAAAGGTACTGGGCACATTGAATGCTTTGGGATGCCATGAAAAAAAGAGGAACTACAGTAAGATACATATAGGCTGGTCTCAA</canonical_amplicon>
		<polymorphic_amplicon>GATATCGCGTTCTCTGTTTATTTGAGTCTCTCGTCAAAATGCAATGTTTTCAAGATATCACATTTCATCGTTCCAACCTTTTGCCCATATTCCGACAGAGTTAGAATTTCATCCGGTGAGAAAATCGAAGAAGAGAAAATTTTTGGCAAAGGGGAAAAAAGRTACTGGGCACATTGAATGCTTTGGGATGCCATGAAAAAAAGAGGAACTACAGTAAGATACATATAGGCTGGTCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12545</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>726478</contig_pos>
        <strand>+</strand>
        <context>TCCTAGTTAG[G/T]GATACGGTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGGGGCGGAGAATCGTGTTGATGACAGGTGAAAGTTGTTTTCCTAGTTAG</left_flank>
        <right_flank>GATACGGTATACCAATGATTCTTAGCTGTGACTGGCACAGAGACACTCGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAACAACCGCCCCAATTTTCCGTTACTTTTCTCCTCACCGTCTCCTTCCCCTTCTATTGTTCTATTACGATATTAAATGGGAAAGAGGGAGAGAAAAGAAATGGGCGGAGCTTGAGAATGTGCAAAAACACAAACAAATGGGGGATACGGTAACATGATATTTCATCTAGATTATTTTTCTGCCTCTTCCGCTCCGATCGTTTCCCTTTTATATGGCACGGCCCCAATTGGTACAGTAATACCAACTGAACGAAATTGAAAAATTGAGAATAAAAGAGCTAATCATTCAGAGAAGAAAACATGCGAAACCAAGCTAGAGAATCTCAGAAAACTGACGAGAAAAGAGAAGGGAAAAGATAGAGACCAAAGTGTACCCGGTGCACGGAGAACCACCGATTGTAGAGGTCAGAAATGATCCAGAATAGAAAAAAGAACACGACAGGCAATAGGGGGCGGAGAATCGTGTTGATGACAGGTGAAAGTTGTTTTCCTAGTTAGTGATACGGTATACCAATGATTCTTAGCTGTGACTGGCACAGAGACACTCGAAAAGTAATTCTAGCTGGATGAGAGGGAAGGTTCCAGATATCGCGTTCTCTGTTTATTTGAGTCTCTCGTCAAAATGCAATGTTTTCAAGATATCACATTTCATCGTTCCAACCTTTTGCCCATATTCCGACAGAGTTAGAATTTCATCCGGTGAGAAAATCGAAGAAGAGAAAATTTTTGGCAAAGGGGAAAAAAGGTACTGGGCACATTGAATGCTTTGGGATGCCATGAAAAAAAGAGGAACTACAGTAAGATACATATAGGCTGGTCTCAATTGAAAAGCTAGGAATTTTCAGAGAATTCTGAGAATACAAATTTTTCAATCTAGATCTGTTTTATAACCTCCGAAAATTTCAAACTGATCGGACACAGGGCAGTCGAGCTCTCGACTCGTGCACATAGTCAAAATCAACTGAACAACACATTTTTGTATCTTATCGGCTGGTACTG</canonical>
            <polymorphic>TAAACAACCGCCCCAATTTTCCGTTACTTTTCTCCTCACCGTCTCCTTCCCCTTCTATTGTTCTATTACGATATTAAATGGGAAAGAGGGAGAGAAAAGAAATGGGCGGAGCTTGAGAATGTGCAAAAACACAAACAAATGGGGGATACGGTAACATGATATTTCATCTAGATTATTTTTCTGCCTCTTCCGCTCCGATCGTTTCCCTTTTATATGGCACGGCCCCAATTGGTACAGTAATACCAACTGAACGAAATTGAAAAATTGAGAATAAAAGAGCTAATCATTCAGAGAAGAAAACATGCGAAACCAAGCTAGAGAATCTCAGAAAACTGACGAGAAAAGAGAAGGGAAAAGATAGAGACCAAAGTGTACCCGGTGCACGGAGAACCACCGATTGTAGAGGTCAGAAATGATCCAGAATAGAAAAAAGAACACGACAGGCAATAGGGGGCGGAGAATCGTGTTGATGACAGGTGAAAGTTGTTTTCCTAGTTAGKGATACGGTATACCAATGATTCTTAGCTGTGACTGGCACAGAGACACTCGAAAAGTAATTCTAGCTGGATGAGAGGGAAGGTTCCAGATATCGCGTTCTCTGTTTATTTGAGTCTCTCGTCAAAATGCAATGTTTTCAAGATATCACATTTCATCGTTCCAACCTTTTGCCCATATTCCGACAGAGTTAGAATTTCATCCGGTGAGAAAATCGAAGAAGAGAAAATTTTTGGCAAAGGGGAAAAAAGGTACTGGGCACATTGAATGCTTTGGGATGCCATGAAAAAAAGAGGAACTACAGTAAGATACATATAGGCTGGTCTCAATTGAAAAGCTAGGAATTTTCAGAGAATTCTGAGAATACAAATTTTTCAATCTAGATCTGTTTTATAACCTCCGAAAATTTCAAACTGATCGGACACAGGGCAGTCGAGCTCTCGACTCGTGCACATAGTCAAAATCAACTGAACAACACATTTTTGTATCTTATCGGCTGGTACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>163 153 100 88 85 58 53 44 38 29 29 28 26 25 22 13 10 9 8 8 7 2 2</canonical_bands>
                <polymorphic_bands>163 153 100 88 85 58 53 51 44 38 29 28 26 25 13 10 9 8 8 7 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAAATGATCCAGAATAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AACGATGAAATGTGATATCTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGAAATGATCCAGAATAGAAAAAAGAACACGACAGGCAATAGGGGGCGGAGAATCGTGTTGATGACAGGTGAAAGTTGTTTTCCTAGTTAGTGATACGGTATACCAATGATTCTTAGCTGTGACTGGCACAGAGACACTCGAAAAGTAATTCTAGCTGGATGAGAGGGAAGGTTCCAGATATCGCGTTCTCTGTTTATTTGAGTCTCTCGTCAAAATGCAATGTTTTCAAGATATCACATTTCATCGTT</canonical_amplicon>
		<polymorphic_amplicon>CAGAAATGATCCAGAATAGAAAAAAGAACACGACAGGCAATAGGGGGCGGAGAATCGTGTTGATGACAGGTGAAAGTTGTTTTCCTAGTTAGKGATACGGTATACCAATGATTCTTAGCTGTGACTGGCACAGAGACACTCGAAAAGTAATTCTAGCTGGATGAGAGGGAAGGTTCCAGATATCGCGTTCTCTGTTTATTTGAGTCTCTCGTCAAAATGCAATGTTTTCAAGATATCACATTTCATCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12546</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>778930</contig_pos>
        <strand>+</strand>
        <context>TTTTGATTCC[C/T]AAACGTTCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTATTTTTAAAGTTTTGAATCCCATTTTTATTTCTCCATTTTTGATTCC</left_flank>
        <right_flank>AAACGTTCACTTCAAAACTTCAATTTCTGTTTTTTCGCTGAATTTCACAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGACATTTTTCAAGGTACCCTTCACTTTTCAATTTTCGAATCGGTTGCTTTTTCTTGTTATTACAGTTGCTTCTTCTGCGATTTCTCACGTGATACAAACGATAAGCAACGACGATTGAGAGACCAAATATTGCGGTCAACGCAAATCTGGAGATTTTAGTTTTTATTCCTTTTTTTTAGGAAACATAACTCCTTACTTCAGAAGTGGTCTCATTGTGTCCGATCCAACAACTAACTGTTTTGAAAAACTGATTTCAATTTTTTTTTGAATTAGGATTTCAGTTGTCAGACGTGGATTGTTGGATTGTAAACCAACATTTTCACGCTGAAATACCAAATGAAAACCTCAAACTGTTGAAATTAGGAGAAATCCCGGATCCTTTCACCCGTTTTCTGGGACTTTTTCCCCATTTTTCATTTCCTTTATTATTCACTTTTTTTGTTAACTTTTATTTTTAAAGTTTTGAATCCCATTTTTATTTCTCCATTTTTGATTCCTAAACGTTCACTTCAAAACTTCAATTTCTGTTTTTTCGCTGAATTTCACATTTCCTATTTGTCTTTCCCTTTTTCATTTTTCCAATTTTCCGGCTCCCAATTTTTCACTTCAAATTTTAATTTCCATTTTCTCAATCCCAATTTTTTTCTTCAAAAATTTTAACTTCCTTTCTAATTCCCTAATTTTGCTTTTAACGTTTTAACTACCGTTTTTGATTCCCAATTTTTCATTTCTAACGTTTTAATTTCCATTTTTTTTATTCCCAATGTTTTGTTCGCAATTTTTTCTTCCCAATTTTTTATTTCGAATTTTTCATTTTTCATTTTTTTTATTTTCATTTTTTTTTAGTCCTAGATTTACCCTCCGATTTTTTGTATTTCCGATTTTTCATCTCACAATTTTAATTTCCATTTCTTAATTTCTAATTTTTCTTTTCCATTTTTTCATTTCAAATTTTTAACTTCCATTTTTTCATTCCCATTTTTGACTCCCAATTTTCA</canonical>
            <polymorphic>CAGACATTTTTCAAGGTACCCTTCACTTTTCAATTTTCGAATCGGTTGCTTTTTCTTGTTATTACAGTTGCTTCTTCTGCGATTTCTCACGTGATACAAACGATAAGCAACGACGATTGAGAGACCAAATATTGCGGTCAACGCAAATCTGGAGATTTTAGTTTTTATTCCTTTTTTTTAGGAAACATAACTCCTTACTTCAGAAGTGGTCTCATTGTGTCCGATCCAACAACTAACTGTTTTGAAAAACTGATTTCAATTTTTTTTTGAATTAGGATTTCAGTTGTCAGACGTGGATTGTTGGATTGTAAACCAACATTTTCACGCTGAAATACCAAATGAAAACCTCAAACTGTTGAAATTAGGAGAAATCCCGGATCCTTTCACCCGTTTTCTGGGACTTTTTCCCCATTTTTCATTTCCTTTATTATTCACTTTTTTTGTTAACTTTTATTTTTAAAGTTTTGAATCCCATTTTTATTTCTCCATTTTTGATTCCYAAACGTTCACTTCAAAACTTCAATTTCTGTTTTTTCGCTGAATTTCACATTTCCTATTTGTCTTTCCCTTTTTCATTTTTCCAATTTTCCGGCTCCCAATTTTTCACTTCAAATTTTAATTTCCATTTTCTCAATCCCAATTTTTTTCTTCAAAAATTTTAACTTCCTTTCTAATTCCCTAATTTTGCTTTTAACGTTTTAACTACCGTTTTTGATTCCCAATTTTTCATTTCTAACGTTTTAATTTCCATTTTTTTTATTCCCAATGTTTTGTTCGCAATTTTTTCTTCCCAATTTTTTATTTCGAATTTTTCATTTTTCATTTTTTTTATTTTCATTTTTTTTTAGTCCTAGATTTACCCTCCGATTTTTTGTATTTCCGATTTTTCATCTCACAATTTTAATTTCCATTTCTTAATTTCTAATTTTTCTTTTCCATTTTTTCATTTCAAATTTTTAACTTCCATTTTTTCATTCCCATTTTTGACTCCCAATTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAAATACCAAATGAAAACCT</pcr_primer_p1>
		<pcr_primer_p2>ATGAAAAAGGGAAAGACAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGAAATACCAAATGAAAACCTCAAACTGTTGAAATTAGGAGAAATCCCGGATCCTTTCACCCGTTTTCTGGGACTTTTTCCCCATTTTTCATTTCCTTTATTATTCACTTTTTTTGTTAACTTTTATTTTTAAAGTTTTGAATCCCATTTTTATTTCTCCATTTTTGATTCCTAAACGTTCACTTCAAAACTTCAATTTCTGTTTTTTCGCTGAATTTCACATTTCCTATTTGTCTTTCCCTTTTTCAT</canonical_amplicon>
		<polymorphic_amplicon>CTGAAATACCAAATGAAAACCTCAAACTGTTGAAATTAGGAGAAATCCCGGATCCTTTCACCCGTTTTCTGGGACTTTTTCCCCATTTTTCATTTCCTTTATTATTCACTTTTTTTGTTAACTTTTATTTTTAAAGTTTTGAATCCCATTTTTATTTCTCCATTTTTGATTCCYAAACGTTCACTTCAAAACTTCAATTTCTGTTTTTTCGCTGAATTTCACATTTCCTATTTGTCTTTCCCTTTTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12547</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>73502</contig_pos>
        <strand>+</strand>
        <context>GGAGAAAATT[A/G]TGGAAGAGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCGTGCGCAGGATTTGAACATAAAACTTCGGAAGAGAGGGGAGAAAATT</left_flank>
        <right_flank>TGGAAGAGCTACAGTACTTCAAAGATAGATTTAGGACAATTATGGATATT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTGTCAAGTCGTTTCGAAATGACTGGTTTCGACGGGTCGCGGTTTCGAACTGACATTCAAATTAAATTTGAATTCTTTCAGTGCTAATGGCTTCCTCCAGCCAAGGCGTTCCAGAACCGTCATCAAGCAATCAGGCTGAAAAATCAGTCCACATGGGCCATGACATGGCACAAAAAAGGCAAATGATCGCTAAAAAGAAGTACCATAAATTGAGAAAGAATATTCGTTTATTCAAAAAGAAAATGGTCCATAAAATGAATAGAATTCGTGTAAATCAAAAAAAAGAAGTTAGAAGATTGAAGGCAAAGGTAGAAAAGGTAAATGAAGCAAAAAGAGAGGTCGAAGAGGCATGGGATGAGGGAAAAGCGAAAATGGATGGAGACGGGTATTTTGATAATTTTGGAGGCAAAAATGAACCACCGTTGGGCAATCTTATGAAAGCCATGCGTCGTGCGCAGGATTTGAACATAAAACTTCGGAAGAGAGGGGAGAAAATTATGGAAGAGCTACAGTACTTCAAAGATAGATTTAGGACAATTATGGATATTGTCGAATCGAAAAGGATTAATAAAGAGGAAAAATATAATCAGATGGTTAAGAAATTTATTGAGATTCAGGAGAAGCAGGATGGTGTTCCATCCACTTTAGGACCACAGCCTGCAAAAAAAAGTGAGTTGTTGAATTCTGAAAACGGGAAAATATGAATAATATGCAGAGAAAACGATAAATCAAGTGTTCAAGCTGGTCTCCATTCCTTCCAGAAGCTTCGTTTTTCTTCGATTTTCTTTTTTTTTGCCCTCTGATCTTGAACCACTTTTCGTCCCAGACCTTTCTCTTTGATTCTGAAAATTTATTTTTTCAACAAATTCCTTCATTTTTCTATTGTCATATCCATCCCCATGATCTTCCTAGAAATACAGAAAATTTTTACACTTCCATTTTCTCACTGCATCCTGCAAATACCAATTTTATCTCGAGATAAATCAATAAAGTACATT</canonical>
            <polymorphic>AAGTGTCAAGTCGTTTCGAAATGACTGGTTTCGACGGGTCGCGGTTTCGAACTGACATTCAAATTAAATTTGAATTCTTTCAGTGCTAATGGCTTCCTCCAGCCAAGGCGTTCCAGAACCGTCATCAAGCAATCAGGCTGAAAAATCAGTCCACATGGGCCATGACATGGCACAAAAAAGGCAAATGATCGCTAAAAAGAAGTACCATAAATTGAGAAAGAATATTCGTTTATTCAAAAAGAAAATGGTCCATAAAATGAATAGAATTCGTGTAAATCAAAAAAAAGAAGTTAGAAGATTGAAGGCAAAGGTAGAAAAGGTAAATGAAGCAAAAAGAGAGGTCGAAGAGGCATGGGATGAGGGAAAAGCGAAAATGGATGGAGACGGGTATTTTGATAATTTTGGAGGCAAAAATGAACCACCGTTGGGCAATCTTATGAAAGCCATGCGTCGTGCGCAGGATTTGAACATAAAACTTCGGAAGAGAGGGGAGAAAATTRTGGAAGAGCTACAGTACTTCAAAGATAGATTTAGGACAATTATGGATATTGTCGAATCGAAAAGGATTAATAAAGAGGAAAAATATAATCAGATGGTTAAGAAATTTATTGAGATTCAGGAGAAGCAGGATGGTGTTCCATCCACTTTAGGACCACAGCCTGCAAAAAAAAGTGAGTTGTTGAATTCTGAAAACGGGAAAATATGAATAATATGCAGAGAAAACGATAAATCAAGTGTTCAAGCTGGTCTCCATTCCTTCCAGAAGCTTCGTTTTTCTTCGATTTTCTTTTTTTTTGCCCTCTGATCTTGAACCACTTTTCGTCCCAGACCTTTCTCTTTGATTCTGAAAATTTATTTTTTCAACAAATTCCTTCATTTTTCTATTGTCATATCCATCCCCATGATCTTCCTAGAAATACAGAAAATTTTTACACTTCCATTTTCTCACTGCATCCTGCAAATACCAATTTTATCTCGAGATAAATCAATAAAGTACATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAAAAGGTAAATGAAGCAAAA</pcr_primer_p1>
		<pcr_primer_p2>TCGATTCGACAATATCCATAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAGAAAAGGTAAATGAAGCAAAAAGAGAGGTCGAAGAGGCATGGGATGAGGGAAAAGCGAAAATGGATGGAGACGGGTATTTTGATAATTTTGGAGGCAAAAATGAACCACCGTTGGGCAATCTTATGAAAGCCATGCGTCGTGCGCAGGATTTGAACATAAAACTTCGGAAGAGAGGGGAGAAAATTATGGAAGAGCTACAGTACTTCAAAGATAGATTTAGGACAATTATGGATATTGTCGAATCGA</canonical_amplicon>
		<polymorphic_amplicon>TAGAAAAGGTAAATGAAGCAAAAAGAGAGGTCGAAGAGGCATGGGATGAGGGAAAAGCGAAAATGGATGGAGACGGGTATTTTGATAATTTTGGAGGCAAAAATGAACCACCGTTGGGCAATCTTATGAAAGCCATGCGTCGTGCGCAGGATTTGAACATAAAACTTCGGAAGAGAGGGGAGAAAATTRTGGAAGAGCTACAGTACTTCAAAGATAGATTTAGGACAATTATGGATATTGTCGAATCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12548</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>73397</contig_pos>
        <strand>+</strand>
        <context>CGGGTATTTT[G/T]ATAATTTTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGAGGCATGGGATGAGGGAAAAGCGAAAATGGATGGAGACGGGTATTTT</left_flank>
        <right_flank>ATAATTTTGGAGGCAAAAATGAACCACCGTTGGGCAATCTTATGAAAGCC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATTTCGAAACTGCGTAACACTTTGAAACCAGGTTTTTCGTAACCAGTCATTCCGAAACTTTTTCTCGGTTTCGAAATGACCGGTTTCGAAATGACTGAATTCGAAGTGTCAAGTCGTTTCGAAATGACTGGTTTCGACGGGTCGCGGTTTCGAACTGACATTCAAATTAAATTTGAATTCTTTCAGTGCTAATGGCTTCCTCCAGCCAAGGCGTTCCAGAACCGTCATCAAGCAATCAGGCTGAAAAATCAGTCCACATGGGCCATGACATGGCACAAAAAAGGCAAATGATCGCTAAAAAGAAGTACCATAAATTGAGAAAGAATATTCGTTTATTCAAAAAGAAAATGGTCCATAAAATGAATAGAATTCGTGTAAATCAAAAAAAAGAAGTTAGAAGATTGAAGGCAAAGGTAGAAAAGGTAAATGAAGCAAAAAGAGAGGTCGAAGAGGCATGGGATGAGGGAAAAGCGAAAATGGATGGAGACGGGTATTTTGATAATTTTGGAGGCAAAAATGAACCACCGTTGGGCAATCTTATGAAAGCCATGCGTCGTGCGCAGGATTTGAACATAAAACTTCGGAAGAGAGGGGAGAAAATTATGGAAGAGCTACAGTACTTCAAAGATAGATTTAGGACAATTATGGATATTGTCGAATCGAAAAGGATTAATAAAGAGGAAAAATATAATCAGATGGTTAAGAAATTTATTGAGATTCAGGAGAAGCAGGATGGTGTTCCATCCACTTTAGGACCACAGCCTGCAAAAAAAAGTGAGTTGTTGAATTCTGAAAACGGGAAAATATGAATAATATGCAGAGAAAACGATAAATCAAGTGTTCAAGCTGGTCTCCATTCCTTCCAGAAGCTTCGTTTTTCTTCGATTTTCTTTTTTTTTGCCCTCTGATCTTGAACCACTTTTCGTCCCAGACCTTTCTCTTTGATTCTGAAAATTTATTTTTTCAACAAATTCCTTCATTTTTCTATTGTCATATCC</canonical>
            <polymorphic>TCATTTCGAAACTGCGTAACACTTTGAAACCAGGTTTTTCGTAACCAGTCATTCCGAAACTTTTTCTCGGTTTCGAAATGACCGGTTTCGAAATGACTGAATTCGAAGTGTCAAGTCGTTTCGAAATGACTGGTTTCGACGGGTCGCGGTTTCGAACTGACATTCAAATTAAATTTGAATTCTTTCAGTGCTAATGGCTTCCTCCAGCCAAGGCGTTCCAGAACCGTCATCAAGCAATCAGGCTGAAAAATCAGTCCACATGGGCCATGACATGGCACAAAAAAGGCAAATGATCGCTAAAAAGAAGTACCATAAATTGAGAAAGAATATTCGTTTATTCAAAAAGAAAATGGTCCATAAAATGAATAGAATTCGTGTAAATCAAAAAAAAGAAGTTAGAAGATTGAAGGCAAAGGTAGAAAAGGTAAATGAAGCAAAAAGAGAGGTCGAAGAGGCATGGGATGAGGGAAAAGCGAAAATGGATGGAGACGGGTATTTTKATAATTTTGGAGGCAAAAATGAACCACCGTTGGGCAATCTTATGAAAGCCATGCGTCGTGCGCAGGATTTGAACATAAAACTTCGGAAGAGAGGGGAGAAAATTATGGAAGAGCTACAGTACTTCAAAGATAGATTTAGGACAATTATGGATATTGTCGAATCGAAAAGGATTAATAAAGAGGAAAAATATAATCAGATGGTTAAGAAATTTATTGAGATTCAGGAGAAGCAGGATGGTGTTCCATCCACTTTAGGACCACAGCCTGCAAAAAAAAGTGAGTTGTTGAATTCTGAAAACGGGAAAATATGAATAATATGCAGAGAAAACGATAAATCAAGTGTTCAAGCTGGTCTCCATTCCTTCCAGAAGCTTCGTTTTTCTTCGATTTTCTTTTTTTTTGCCCTCTGATCTTGAACCACTTTTCGTCCCAGACCTTTCTCTTTGATTCTGAAAATTTATTTTTTCAACAAATTCCTTCATTTTTCTATTGTCATATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATGGTCCATAAAATGAATA</pcr_primer_p1>
		<pcr_primer_p2>TCTCTTCCGAAGTTTTATGTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAAATGGTCCATAAAATGAATAGAATTCGTGTAAATCAAAAAAAAGAAGTTAGAAGATTGAAGGCAAAGGTAGAAAAGGTAAATGAAGCAAAAAGAGAGGTCGAAGAGGCATGGGATGAGGGAAAAGCGAAAATGGATGGAGACGGGTATTTTGATAATTTTGGAGGCAAAAATGAACCACCGTTGGGCAATCTTATGAAAGCCATGCGTCGTGCGCAGGATTTGAACATAAAACTTCGGAAGAGA</canonical_amplicon>
		<polymorphic_amplicon>GAAAATGGTCCATAAAATGAATAGAATTCGTGTAAATCAAAAAAAAGAAGTTAGAAGATTGAAGGCAAAGGTAGAAAAGGTAAATGAAGCAAAAAGAGAGGTCGAAGAGGCATGGGATGAGGGAAAAGCGAAAATGGATGGAGACGGGTATTTTKATAATTTTGGAGGCAAAAATGAACCACCGTTGGGCAATCTTATGAAAGCCATGCGTCGTGCGCAGGATTTGAACATAAAACTTCGGAAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12549</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>73310</contig_pos>
        <strand></strand>
        <context>ATTGAAGGCA[A/G]AGGTAGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAATAGAATTCGTGTAAATCAAAAAAAAGAAGTTAGAAGATTGAAGGCA</left_flank>
        <right_flank>AGGTAGAAAAGGTAAATGAAGCAAAAAGAGAGGTCGAAGAGGCATGGGAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAGGACAAATATCAAACTAAAGTTGGTGAGTATTTGTTTTTTCAAGGCTCGGCGTCATTTCGAAACCGCGACATTTCGAAACCGGTCATTTCGAAACTGCGTAACACTTTGAAACCAGGTTTTTCGTAACCAGTCATTCCGAAACTTTTTCTCGGTTTCGAAATGACCGGTTTCGAAATGACTGAATTCGAAGTGTCAAGTCGTTTCGAAATGACTGGTTTCGACGGGTCGCGGTTTCGAACTGACATTCAAATTAAATTTGAATTCTTTCAGTGCTAATGGCTTCCTCCAGCCAAGGCGTTCCAGAACCGTCATCAAGCAATCAGGCTGAAAAATCAGTCCACATGGGCCATGACATGGCACAAAAAAGGCAAATGATCGCTAAAAAGAAGTACCATAAATTGAGAAAGAATATTCGTTTATTCAAAAAGAAAATGGTCCATAAAATGAATAGAATTCGTGTAAATCAAAAAAAAGAAGTTAGAAGATTGAAGGCAAAGGTAGAAAAGGTAAATGAAGCAAAAAGAGAGGTCGAAGAGGCATGGGATGAGGGAAAAGCGAAAATGGATGGAGACGGGTATTTTGATAATTTTGGAGGCAAAAATGAACCACCGTTGGGCAATCTTATGAAAGCCATGCGTCGTGCGCAGGATTTGAACATAAAACTTCGGAAGAGAGGGGAGAAAATTATGGAAGAGCTACAGTACTTCAAAGATAGATTTAGGACAATTATGGATATTGTCGAATCGAAAAGGATTAATAAAGAGGAAAAATATAATCAGATGGTTAAGAAATTTATTGAGATTCAGGAGAAGCAGGATGGTGTTCCATCCACTTTAGGACCACAGCCTGCAAAAAAAAGTGAGTTGTTGAATTCTGAAAACGGGAAAATATGAATAATATGCAGAGAAAACGATAAATCAAGTGTTCAAGCTGGTCTCCATTCCTTCCAGAAGCTTCGTTTTTCTTCGATTTTCTTTTTTTTTGCCCTCTGATCT</canonical>
            <polymorphic>TTCAGGACAAATATCAAACTAAAGTTGGTGAGTATTTGTTTTTTCAAGGCTCGGCGTCATTTCGAAACCGCGACATTTCGAAACCGGTCATTTCGAAACTGCGTAACACTTTGAAACCAGGTTTTTCGTAACCAGTCATTCCGAAACTTTTTCTCGGTTTCGAAATGACCGGTTTCGAAATGACTGAATTCGAAGTGTCAAGTCGTTTCGAAATGACTGGTTTCGACGGGTCGCGGTTTCGAACTGACATTCAAATTAAATTTGAATTCTTTCAGTGCTAATGGCTTCCTCCAGCCAAGGCGTTCCAGAACCGTCATCAAGCAATCAGGCTGAAAAATCAGTCCACATGGGCCATGACATGGCACAAAAAAGGCAAATGATCGCTAAAAAGAAGTACCATAAATTGAGAAAGAATATTCGTTTATTCAAAAAGAAAATGGTCCATAAAATGAATAGAATTCGTGTAAATCAAAAAAAAGAAGTTAGAAGATTGAAGGCARAGGTAGAAAAGGTAAATGAAGCAAAAAGAGAGGTCGAAGAGGCATGGGATGAGGGAAAAGCGAAAATGGATGGAGACGGGTATTTTGATAATTTTGGAGGCAAAAATGAACCACCGTTGGGCAATCTTATGAAAGCCATGCGTCGTGCGCAGGATTTGAACATAAAACTTCGGAAGAGAGGGGAGAAAATTATGGAAGAGCTACAGTACTTCAAAGATAGATTTAGGACAATTATGGATATTGTCGAATCGAAAAGGATTAATAAAGAGGAAAAATATAATCAGATGGTTAAGAAATTTATTGAGATTCAGGAGAAGCAGGATGGTGTTCCATCCACTTTAGGACCACAGCCTGCAAAAAAAAGTGAGTTGTTGAATTCTGAAAACGGGAAAATATGAATAATATGCAGAGAAAACGATAAATCAAGTGTTCAAGCTGGTCTCCATTCCTTCCAGAAGCTTCGTTTTTCTTCGATTTTCTTTTTTTTTGCCCTCTGATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATGGTCCATAAAATGAATA</pcr_primer_p1>
		<pcr_primer_p2>TCTCTTCCGAAGTTTTATGTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAAATGGTCCATAAAATGAATAGAATTCGTGTAAATCAAAAAAAAGAAGTTAGAAGATTGAAGGCAAAGGTAGAAAAGGTAAATGAAGCAAAAAGAGAGGTCGAAGAGGCATGGGATGAGGGAAAAGCGAAAATGGATGGAGACGGGTATTTTGATAATTTTGGAGGCAAAAATGAACCACCGTTGGGCAATCTTATGAAAGCCATGCGTCGTGCGCAGGATTTGAACATAAAACTTCGGAAGAGA</canonical_amplicon>
		<polymorphic_amplicon>GAAAATGGTCCATAAAATGAATAGAATTCGTGTAAATCAAAAAAAAGAAGTTAGAAGATTGAAGGCARAGGTAGAAAAGGTAAATGAAGCAAAAAGAGAGGTCGAAGAGGCATGGGATGAGGGAAAAGCGAAAATGGATGGAGACGGGTATTTTGATAATTTTGGAGGCAAAAATGAACCACCGTTGGGCAATCTTATGAAAGCCATGCGTCGTGCGCAGGATTTGAACATAAAACTTCGGAAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12550</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>73288</contig_pos>
        <strand>+</strand>
        <context>ATCRAAAAAA[A/G]GAAGTTAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAGAAAATGGTCCATAAAATGAATAGAATTCGTGTAAATCAAAAAAA</left_flank>
        <right_flank>GAAGTTAGAAGATTGAAGGCAAAGGTAGAAAAGGTAAATGAAGCAAAAAG</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGATGGAGAAATTGATTGTGATTCAGGACAAATATCAAACTAAAGTTGGTGAGTATTTGTTTTTTCAAGGCTCGGCGTCATTTCGAAACCGCGACATTTCGAAACCGGTCATTTCGAAACTGCGTAACACTTTGAAACCAGGTTTTTCGTAACCAGTCATTCCGAAACTTTTTCTCGGTTTCGAAATGACCGGTTTCGAAATGACTGAATTCGAAGTGTCAAGTCGTTTCGAAATGACTGGTTTCGACGGGTCGCGGTTTCGAACTGACATTCAAATTAAATTTGAATTCTTTCAGTGCTAATGGCTTCCTCCAGCCAAGGCGTTCCAGAACCGTCATCAAGCAATCAGGCTGAAAAATCAGTCCACATGGGCCATGACATGGCACAAAAAAGGCAAATGATCGCTAAAAAGAAGTACCATAAATTGAGAAAGAATATTCGTTTATTCAAAAAGAAAATGGTCCATAAAATGAATAGAATTCGTGTAAATCAAAAAAAAGAAGTTAGAAGATTGAAGGCAAAGGTAGAAAAGGTAAATGAAGCAAAAAGAGAGGTCGAAGAGGCATGGGATGAGGGAAAAGCGAAAATGGATGGAGACGGGTATTTTGATAATTTTGGAGGCAAAAATGAACCACCGTTGGGCAATCTTATGAAAGCCATGCGTCGTGCGCAGGATTTGAACATAAAACTTCGGAAGAGAGGGGAGAAAATTATGGAAGAGCTACAGTACTTCAAAGATAGATTTAGGACAATTATGGATATTGTCGAATCGAAAAGGATTAATAAAGAGGAAAAATATAATCAGATGGTTAAGAAATTTATTGAGATTCAGGAGAAGCAGGATGGTGTTCCATCCACTTTAGGACCACAGCCTGCAAAAAAAAGTGAGTTGTTGAATTCTGAAAACGGGAAAATATGAATAATATGCAGAGAAAACGATAAATCAAGTGTTCAAGCTGGTCTCCATTCCTTCCAGAAGCTTCGTTTTTCTTCGATTTT</canonical>
            <polymorphic>ATGATGGAGAAATTGATTGTGATTCAGGACAAATATCAAACTAAAGTTGGTGAGTATTTGTTTTTTCAAGGCTCGGCGTCATTTCGAAACCGCGACATTTCGAAACCGGTCATTTCGAAACTGCGTAACACTTTGAAACCAGGTTTTTCGTAACCAGTCATTCCGAAACTTTTTCTCGGTTTCGAAATGACCGGTTTCGAAATGACTGAATTCGAAGTGTCAAGTCGTTTCGAAATGACTGGTTTCGACGGGTCGCGGTTTCGAACTGACATTCAAATTAAATTTGAATTCTTTCAGTGCTAATGGCTTCCTCCAGCCAAGGCGTTCCAGAACCGTCATCAAGCAATCAGGCTGAAAAATCAGTCCACATGGGCCATGACATGGCACAAAAAAGGCAAATGATCGCTAAAAAGAAGTACCATAAATTGAGAAAGAATATTCGTTTATTCAAAAAGAAAATGGTCCATAAAATGAATAGAATTCGTGTAAATCAAAAAAARGAAGTTAGAAGATTGAAGGCAAAGGTAGAAAAGGTAAATGAAGCAAAAAGAGAGGTCGAAGAGGCATGGGATGAGGGAAAAGCGAAAATGGATGGAGACGGGTATTTTGATAATTTTGGAGGCAAAAATGAACCACCGTTGGGCAATCTTATGAAAGCCATGCGTCGTGCGCAGGATTTGAACATAAAACTTCGGAAGAGAGGGGAGAAAATTATGGAAGAGCTACAGTACTTCAAAGATAGATTTAGGACAATTATGGATATTGTCGAATCGAAAAGGATTAATAAAGAGGAAAAATATAATCAGATGGTTAAGAAATTTATTGAGATTCAGGAGAAGCAGGATGGTGTTCCATCCACTTTAGGACCACAGCCTGCAAAAAAAAGTGAGTTGTTGAATTCTGAAAACGGGAAAATATGAATAATATGCAGAGAAAACGATAAATCAAGTGTTCAAGCTGGTCTCCATTCCTTCCAGAAGCTTCGTTTTTCTTCGATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGTTTATTCAAAAAGAAAATG</pcr_primer_p1>
		<pcr_primer_p2>CGAAGTTTTATGTTCAAATCCT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TTCGTTTATTCAAAAAGAAAATGGTCCATAAAATGAATAGAATTCGTGTAAATCAAAAAAAAGAAGTTAGAAGATTGAAGGCAAAGGTAGAAAAGGTAAATGAAGCAAAAAGAGAGGTCGAAGAGGCATGGGATGAGGGAAAAGCGAAAATGGATGGAGACGGGTATTTTGATAATTTTGGAGGCAAAAATGAACCACCGTTGGGCAATCTTATGAAAGCCATGCGTCGTGCGCAGGATTTGAACATAAAACTTCG</canonical_amplicon>
		<polymorphic_amplicon>TTCGTTTATTCAAAAAGAAAATGGTCCATAAAATGAATAGAATTCGTGTAAATCAAAAAAARGAAGTTAGAAGATTGAAGGCAAAGGTAGAAAAGGTAAATGAAGCAAAAAGAGAGGTCGAAGAGGCATGGGATGAGGGAAAAGCGAAAATGGATGGAGACGGGTATTTTGATAATTTTGGAGGCAAAAATGAACCACCGTTGGGCAATCTTATGAAAGCCATGCGTCGTGCGCAGGATTTGAACATAAAACTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12551</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>212106</contig_pos>
        <strand>+</strand>
        <context>TTCCCGGATT[A/T]CCAGGACATC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGATTCCCTCCACCACCAACATTCCCTCCAATGAATAGCTTTCCCGGATT</left_flank>
        <right_flank>CCAGGACATCAGACTTCAGAATTCGTCCCGCAGAATTCTGGATTCTCAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCTCGATAGGATCATTTTTTTACAAAAAAGTTGTCAACTACAAAATTGAAGCTCTATTTTTGTTTAGTATATACCGAAATTTTGAGTTTTATTCGACAAAAACTACCGTACATTTTTCACTAAAAATTGATAAACTTTCACCCGATTTTTTTGTAGATCTATTGTAGATCAAACACTAGATCAATTGATCTTCTTTCAAAATTTACCCGCATTTTTCCAATTTTTGTTTACAAAAACAGTTTGAATCACATATTTTTTCCCAAAATAAAATTTTTTTCTTCCTCGATATTCCAAAAACTGAAATTTCGAAAATTCCAGAAATCTCCAAAAATGAGCTACTATCCACCTCCGCCAAGCAACTATCCGTACCACGATTATCCATACAATTGGCCGCCGTTTCCACCATTTCTTCCGATTCATGGATTTTCGATGGACCAAGGATTCCAGGGATTCCCTCCACCACCAACATTCCCTCCAATGAATAGCTTTCCCGGATTTCCAGGACATCAGACTTCAGAATTCGTCCCGCAGAATTCTGGATTCTCAAATCCAGAAACTCTTCAAATTACACGATTCGTCCCACGTCATCCAGGATTCCAGATCCTTCAGAATCCAGAAACCGCAGTTCAGAATTCAGAAATCCAGGAGCAAGAAGTTGTCCCACAAAATCCCCCAAATCCAGATGTTCTTCAAGAAGACGTGCAGGACAATCTGAAATTTCCAAAATCCGAAATTCTCGAAATTCCAGAAGACGTGACTTATCAAGAATGCCAAAATTGCAAAGATCTGAAATCTGAAATTCAAGAAATAAAGGAAATTAGTGAGCAGAATCTGGATAACGTCAGAAATGCCTTATTTGAAGAGGCAAATGCTTCCAGTGAGTTTTTCTGAAACTTTGAGCTCAATTATCTCGGTTCCTATAAAATACATCAAAAAGGTGTTCGTTGATAAAATGTAGCTGATAAAATGGGAAATATTTTATCAGTTGACAGATTTGT</canonical>
            <polymorphic>TATCTCGATAGGATCATTTTTTTACAAAAAAGTTGTCAACTACAAAATTGAAGCTCTATTTTTGTTTAGTATATACCGAAATTTTGAGTTTTATTCGACAAAAACTACCGTACATTTTTCACTAAAAATTGATAAACTTTCACCCGATTTTTTTGTAGATCTATTGTAGATCAAACACTAGATCAATTGATCTTCTTTCAAAATTTACCCGCATTTTTCCAATTTTTGTTTACAAAAACAGTTTGAATCACATATTTTTTCCCAAAATAAAATTTTTTTCTTCCTCGATATTCCAAAAACTGAAATTTCGAAAATTCCAGAAATCTCCAAAAATGAGCTACTATCCACCTCCGCCAAGCAACTATCCGTACCACGATTATCCATACAATTGGCCGCCGTTTCCACCATTTCTTCCGATTCATGGATTTTCGATGGACCAAGGATTCCAGGGATTCCCTCCACCACCAACATTCCCTCCAATGAATAGCTTTCCCGGATTWCCAGGACATCAGACTTCAGAATTCGTCCCGCAGAATTCTGGATTCTCAAATCCAGAAACTCTTCAAATTACACGATTCGTCCCACGTCATCCAGGATTCCAGATCCTTCAGAATCCAGAAACCGCAGTTCAGAATTCAGAAATCCAGGAGCAAGAAGTTGTCCCACAAAATCCCCCAAATCCAGATGTTCTTCAAGAAGACGTGCAGGACAATCTGAAATTTCCAAAATCCGAAATTCTCGAAATTCCAGAAGACGTGACTTATCAAGAATGCCAAAATTGCAAAGATCTGAAATCTGAAATTCAAGAAATAAAGGAAATTAGTGAGCAGAATCTGGATAACGTCAGAAATGCCTTATTTGAAGAGGCAAATGCTTCCAGTGAGTTTTTCTGAAACTTTGAGCTCAATTATCTCGGTTCCTATAAAATACATCAAAAAGGTGTTCGTTGATAAAATGTAGCTGATAAAATGGGAAATATTTTATCAGTTGACAGATTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>491 357 90 53 9</canonical_bands>
                <polymorphic_bands>491 357 99 53</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGAGCTACTATCCACCTC</pcr_primer_p1>
		<pcr_primer_p2>GAATCGTGTAATTTGAAGAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGAGCTACTATCCACCTCCGCCAAGCAACTATCCGTACCACGATTATCCATACAATTGGCCGCCGTTTCCACCATTTCTTCCGATTCATGGATTTTCGATGGACCAAGGATTCCAGGGATTCCCTCCACCACCAACATTCCCTCCAATGAATAGCTTTCCCGGATTTCCAGGACATCAGACTTCAGAATTCGTCCCGCAGAATTCTGGATTCTCAAATCCAGAAACTCTTCAAATTACACGATTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGAGCTACTATCCACCTCCGCCAAGCAACTATCCGTACCACGATTATCCATACAATTGGCCGCCGTTTCCACCATTTCTTCCGATTCATGGATTTTCGATGGACCAAGGATTCCAGGGATTCCCTCCACCACCAACATTCCCTCCAATGAATAGCTTTCCCGGATTWCCAGGACATCAGACTTCAGAATTCGTCCCGCAGAATTCTGGATTCTCAAATCCAGAAACTCTTCAAATTACACGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12552</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>212124</contig_pos>
        <strand>+</strand>
        <context>ATCAGACTTC[A/G]GAATTCGTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATTCCCTCCAATGAATAGCTTTCCCGGATTTCCAGGACATCAGACTTC</left_flank>
        <right_flank>GAATTCGTCCCGCAGAATTCTGGATTCTCAAATCCAGAAACTCTTCAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTACAAAAAAGTTGTCAACTACAAAATTGAAGCTCTATTTTTGTTTAGTATATACCGAAATTTTGAGTTTTATTCGACAAAAACTACCGTACATTTTTCACTAAAAATTGATAAACTTTCACCCGATTTTTTTGTAGATCTATTGTAGATCAAACACTAGATCAATTGATCTTCTTTCAAAATTTACCCGCATTTTTCCAATTTTTGTTTACAAAAACAGTTTGAATCACATATTTTTTCCCAAAATAAAATTTTTTTCTTCCTCGATATTCCAAAAACTGAAATTTCGAAAATTCCAGAAATCTCCAAAAATGAGCTACTATCCACCTCCGCCAAGCAACTATCCGTACCACGATTATCCATACAATTGGCCGCCGTTTCCACCATTTCTTCCGATTCATGGATTTTCGATGGACCAAGGATTCCAGGGATTCCCTCCACCACCAACATTCCCTCCAATGAATAGCTTTCCCGGATTTCCAGGACATCAGACTTCAGAATTCGTCCCGCAGAATTCTGGATTCTCAAATCCAGAAACTCTTCAAATTACACGATTCGTCCCACGTCATCCAGGATTCCAGATCCTTCAGAATCCAGAAACCGCAGTTCAGAATTCAGAAATCCAGGAGCAAGAAGTTGTCCCACAAAATCCCCCAAATCCAGATGTTCTTCAAGAAGACGTGCAGGACAATCTGAAATTTCCAAAATCCGAAATTCTCGAAATTCCAGAAGACGTGACTTATCAAGAATGCCAAAATTGCAAAGATCTGAAATCTGAAATTCAAGAAATAAAGGAAATTAGTGAGCAGAATCTGGATAACGTCAGAAATGCCTTATTTGAAGAGGCAAATGCTTCCAGTGAGTTTTTCTGAAACTTTGAGCTCAATTATCTCGGTTCCTATAAAATACATCAAAAAGGTGTTCGTTGATAAAATGTAGCTGATAAAATGGGAAATATTTTATCAGTTGACAGATTTGTGATATCTCTCCTAGGAAC</canonical>
            <polymorphic>TTTTTACAAAAAAGTTGTCAACTACAAAATTGAAGCTCTATTTTTGTTTAGTATATACCGAAATTTTGAGTTTTATTCGACAAAAACTACCGTACATTTTTCACTAAAAATTGATAAACTTTCACCCGATTTTTTTGTAGATCTATTGTAGATCAAACACTAGATCAATTGATCTTCTTTCAAAATTTACCCGCATTTTTCCAATTTTTGTTTACAAAAACAGTTTGAATCACATATTTTTTCCCAAAATAAAATTTTTTTCTTCCTCGATATTCCAAAAACTGAAATTTCGAAAATTCCAGAAATCTCCAAAAATGAGCTACTATCCACCTCCGCCAAGCAACTATCCGTACCACGATTATCCATACAATTGGCCGCCGTTTCCACCATTTCTTCCGATTCATGGATTTTCGATGGACCAAGGATTCCAGGGATTCCCTCCACCACCAACATTCCCTCCAATGAATAGCTTTCCCGGATTTCCAGGACATCAGACTTCRGAATTCGTCCCGCAGAATTCTGGATTCTCAAATCCAGAAACTCTTCAAATTACACGATTCGTCCCACGTCATCCAGGATTCCAGATCCTTCAGAATCCAGAAACCGCAGTTCAGAATTCAGAAATCCAGGAGCAAGAAGTTGTCCCACAAAATCCCCCAAATCCAGATGTTCTTCAAGAAGACGTGCAGGACAATCTGAAATTTCCAAAATCCGAAATTCTCGAAATTCCAGAAGACGTGACTTATCAAGAATGCCAAAATTGCAAAGATCTGAAATCTGAAATTCAAGAAATAAAGGAAATTAGTGAGCAGAATCTGGATAACGTCAGAAATGCCTTATTTGAAGAGGCAAATGCTTCCAGTGAGTTTTTCTGAAACTTTGAGCTCAATTATCTCGGTTCCTATAAAATACATCAAAAAGGTGTTCGTTGATAAAATGTAGCTGATAAAATGGGAAATATTTTATCAGTTGACAGATTTGTGATATCTCTCCTAGGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGAGCTACTATCCACCTC</pcr_primer_p1>
		<pcr_primer_p2>GAATCGTGTAATTTGAAGAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGAGCTACTATCCACCTCCGCCAAGCAACTATCCGTACCACGATTATCCATACAATTGGCCGCCGTTTCCACCATTTCTTCCGATTCATGGATTTTCGATGGACCAAGGATTCCAGGGATTCCCTCCACCACCAACATTCCCTCCAATGAATAGCTTTCCCGGATTTCCAGGACATCAGACTTCAGAATTCGTCCCGCAGAATTCTGGATTCTCAAATCCAGAAACTCTTCAAATTACACGATTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGAGCTACTATCCACCTCCGCCAAGCAACTATCCGTACCACGATTATCCATACAATTGGCCGCCGTTTCCACCATTTCTTCCGATTCATGGATTTTCGATGGACCAAGGATTCCAGGGATTCCCTCCACCACCAACATTCCCTCCAATGAATAGCTTTCCCGGATTTCCAGGACATCAGACTTCRGAATTCGTCCCGCAGAATTCTGGATTCTCAAATCCAGAAACTCTTCAAATTACACGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12553</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>212227</contig_pos>
        <strand>+</strand>
        <context>GAATCCAGAA[A/G]CCGCAGTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACGATTCGTCCCACGTCATCCAGGATTCCAGATCCTTCAGAATCCAGAA</left_flank>
        <right_flank>CCGCAGTTCAGAATTCAGAAATCCAGGAGCAAGAAGTTGTCCCACAAAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAAAAATTGATAAACTTTCACCCGATTTTTTTGTAGATCTATTGTAGATCAAACACTAGATCAATTGATCTTCTTTCAAAATTTACCCGCATTTTTCCAATTTTTGTTTACAAAAACAGTTTGAATCACATATTTTTTCCCAAAATAAAATTTTTTTCTTCCTCGATATTCCAAAAACTGAAATTTCGAAAATTCCAGAAATCTCCAAAAATGAGCTACTATCCACCTCCGCCAAGCAACTATCCGTACCACGATTATCCATACAATTGGCCGCCGTTTCCACCATTTCTTCCGATTCATGGATTTTCGATGGACCAAGGATTCCAGGGATTCCCTCCACCACCAACATTCCCTCCAATGAATAGCTTTCCCGGATTTCCAGGACATCAGACTTCAGAATTCGTCCCGCAGAATTCTGGATTCTCAAATCCAGAAACTCTTCAAATTACACGATTCGTCCCACGTCATCCAGGATTCCAGATCCTTCAGAATCCAGAAACCGCAGTTCAGAATTCAGAAATCCAGGAGCAAGAAGTTGTCCCACAAAATCCCCCAAATCCAGATGTTCTTCAAGAAGACGTGCAGGACAATCTGAAATTTCCAAAATCCGAAATTCTCGAAATTCCAGAAGACGTGACTTATCAAGAATGCCAAAATTGCAAAGATCTGAAATCTGAAATTCAAGAAATAAAGGAAATTAGTGAGCAGAATCTGGATAACGTCAGAAATGCCTTATTTGAAGAGGCAAATGCTTCCAGTGAGTTTTTCTGAAACTTTGAGCTCAATTATCTCGGTTCCTATAAAATACATCAAAAAGGTGTTCGTTGATAAAATGTAGCTGATAAAATGGGAAATATTTTATCAGTTGACAGATTTGTGATATCTCTCCTAGGAACCAAGATAATTGAGCTCAACGTGCACAACTAGAGACCAACCAAGTGCTAATAGAAGCCCACACTTTACATAAACTTTGAGCTCAGTTATCACGGTTGCTATAAT</canonical>
            <polymorphic>CTAAAAATTGATAAACTTTCACCCGATTTTTTTGTAGATCTATTGTAGATCAAACACTAGATCAATTGATCTTCTTTCAAAATTTACCCGCATTTTTCCAATTTTTGTTTACAAAAACAGTTTGAATCACATATTTTTTCCCAAAATAAAATTTTTTTCTTCCTCGATATTCCAAAAACTGAAATTTCGAAAATTCCAGAAATCTCCAAAAATGAGCTACTATCCACCTCCGCCAAGCAACTATCCGTACCACGATTATCCATACAATTGGCCGCCGTTTCCACCATTTCTTCCGATTCATGGATTTTCGATGGACCAAGGATTCCAGGGATTCCCTCCACCACCAACATTCCCTCCAATGAATAGCTTTCCCGGATTTCCAGGACATCAGACTTCAGAATTCGTCCCGCAGAATTCTGGATTCTCAAATCCAGAAACTCTTCAAATTACACGATTCGTCCCACGTCATCCAGGATTCCAGATCCTTCAGAATCCAGAARCCGCAGTTCAGAATTCAGAAATCCAGGAGCAAGAAGTTGTCCCACAAAATCCCCCAAATCCAGATGTTCTTCAAGAAGACGTGCAGGACAATCTGAAATTTCCAAAATCCGAAATTCTCGAAATTCCAGAAGACGTGACTTATCAAGAATGCCAAAATTGCAAAGATCTGAAATCTGAAATTCAAGAAATAAAGGAAATTAGTGAGCAGAATCTGGATAACGTCAGAAATGCCTTATTTGAAGAGGCAAATGCTTCCAGTGAGTTTTTCTGAAACTTTGAGCTCAATTATCTCGGTTCCTATAAAATACATCAAAAAGGTGTTCGTTGATAAAATGTAGCTGATAAAATGGGAAATATTTTATCAGTTGACAGATTTGTGATATCTCTCCTAGGAACCAAGATAATTGAGCTCAACGTGCACAACTAGAGACCAACCAAGTGCTAATAGAAGCCCACACTTTACATAAACTTTGAGCTCAGTTATCACGGTTGCTATAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTCTTCAAATTACACGATTC</pcr_primer_p1>
		<pcr_primer_p2>TGAATTTCAGATTTCAGATCTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACTCTTCAAATTACACGATTCGTCCCACGTCATCCAGGATTCCAGATCCTTCAGAATCCAGAAACCGCAGTTCAGAATTCAGAAATCCAGGAGCAAGAAGTTGTCCCACAAAATCCCCCAAATCCAGATGTTCTTCAAGAAGACGTGCAGGACAATCTGAAATTTCCAAAATCCGAAATTCTCGAAATTCCAGAAGACGTGACTTATCAAGAATGCCAAAATTGCAAAGATCTGAAATCTGAAATTCA</canonical_amplicon>
		<polymorphic_amplicon>AAACTCTTCAAATTACACGATTCGTCCCACGTCATCCAGGATTCCAGATCCTTCAGAATCCAGAARCCGCAGTTCAGAATTCAGAAATCCAGGAGCAAGAAGTTGTCCCACAAAATCCCCCAAATCCAGATGTTCTTCAAGAAGACGTGCAGGACAATCTGAAATTTCCAAAATCCGAAATTCTCGAAATTCCAGAAGACGTGACTTATCAAGAATGCCAAAATTGCAAAGATCTGAAATCTGAAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12554</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>212254</contig_pos>
        <strand>+</strand>
        <context>AGAAATCCAG[A/G]AGCAAGAAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCAGATCCTTCAGAATCCAGAAACCGCAGTTCAGAATTCAGAAATCCAG</left_flank>
        <right_flank>AGCAAGAAGTTGTCCCACAAAATCCCCCAAATCCAGATGTTCTTCAAGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTGTAGATCTATTGTAGATCAAACACTAGATCAATTGATCTTCTTTCAAAATTTACCCGCATTTTTCCAATTTTTGTTTACAAAAACAGTTTGAATCACATATTTTTTCCCAAAATAAAATTTTTTTCTTCCTCGATATTCCAAAAACTGAAATTTCGAAAATTCCAGAAATCTCCAAAAATGAGCTACTATCCACCTCCGCCAAGCAACTATCCGTACCACGATTATCCATACAATTGGCCGCCGTTTCCACCATTTCTTCCGATTCATGGATTTTCGATGGACCAAGGATTCCAGGGATTCCCTCCACCACCAACATTCCCTCCAATGAATAGCTTTCCCGGATTTCCAGGACATCAGACTTCAGAATTCGTCCCGCAGAATTCTGGATTCTCAAATCCAGAAACTCTTCAAATTACACGATTCGTCCCACGTCATCCAGGATTCCAGATCCTTCAGAATCCAGAAACCGCAGTTCAGAATTCAGAAATCCAGGAGCAAGAAGTTGTCCCACAAAATCCCCCAAATCCAGATGTTCTTCAAGAAGACGTGCAGGACAATCTGAAATTTCCAAAATCCGAAATTCTCGAAATTCCAGAAGACGTGACTTATCAAGAATGCCAAAATTGCAAAGATCTGAAATCTGAAATTCAAGAAATAAAGGAAATTAGTGAGCAGAATCTGGATAACGTCAGAAATGCCTTATTTGAAGAGGCAAATGCTTCCAGTGAGTTTTTCTGAAACTTTGAGCTCAATTATCTCGGTTCCTATAAAATACATCAAAAAGGTGTTCGTTGATAAAATGTAGCTGATAAAATGGGAAATATTTTATCAGTTGACAGATTTGTGATATCTCTCCTAGGAACCAAGATAATTGAGCTCAACGTGCACAACTAGAGACCAACCAAGTGCTAATAGAAGCCCACACTTTACATAAACTTTGAGCTCAGTTATCACGGTTGCTATAATAGATATTAGAAAATGGATCACTAAAAA</canonical>
            <polymorphic>TTTTTTGTAGATCTATTGTAGATCAAACACTAGATCAATTGATCTTCTTTCAAAATTTACCCGCATTTTTCCAATTTTTGTTTACAAAAACAGTTTGAATCACATATTTTTTCCCAAAATAAAATTTTTTTCTTCCTCGATATTCCAAAAACTGAAATTTCGAAAATTCCAGAAATCTCCAAAAATGAGCTACTATCCACCTCCGCCAAGCAACTATCCGTACCACGATTATCCATACAATTGGCCGCCGTTTCCACCATTTCTTCCGATTCATGGATTTTCGATGGACCAAGGATTCCAGGGATTCCCTCCACCACCAACATTCCCTCCAATGAATAGCTTTCCCGGATTTCCAGGACATCAGACTTCAGAATTCGTCCCGCAGAATTCTGGATTCTCAAATCCAGAAACTCTTCAAATTACACGATTCGTCCCACGTCATCCAGGATTCCAGATCCTTCAGAATCCAGAAACCGCAGTTCAGAATTCAGAAATCCAGRAGCAAGAAGTTGTCCCACAAAATCCCCCAAATCCAGATGTTCTTCAAGAAGACGTGCAGGACAATCTGAAATTTCCAAAATCCGAAATTCTCGAAATTCCAGAAGACGTGACTTATCAAGAATGCCAAAATTGCAAAGATCTGAAATCTGAAATTCAAGAAATAAAGGAAATTAGTGAGCAGAATCTGGATAACGTCAGAAATGCCTTATTTGAAGAGGCAAATGCTTCCAGTGAGTTTTTCTGAAACTTTGAGCTCAATTATCTCGGTTCCTATAAAATACATCAAAAAGGTGTTCGTTGATAAAATGTAGCTGATAAAATGGGAAATATTTTATCAGTTGACAGATTTGTGATATCTCTCCTAGGAACCAAGATAATTGAGCTCAACGTGCACAACTAGAGACCAACCAAGTGCTAATAGAAGCCCACACTTTACATAAACTTTGAGCTCAGTTATCACGGTTGCTATAATAGATATTAGAAAATGGATCACTAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>503 299 90 53 46 9</canonical_bands>
                <polymorphic_bands>556 299 90 46 9</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>503 299 90 55 53</canonical_bands>
                <polymorphic_bands>556 299 90 55</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>505 343 90 53 9</canonical_bands>
                <polymorphic_bands>558 343 90 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTCTTCAAATTACACGATTC</pcr_primer_p1>
		<pcr_primer_p2>TGAATTTCAGATTTCAGATCTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACTCTTCAAATTACACGATTCGTCCCACGTCATCCAGGATTCCAGATCCTTCAGAATCCAGAAACCGCAGTTCAGAATTCAGAAATCCAGGAGCAAGAAGTTGTCCCACAAAATCCCCCAAATCCAGATGTTCTTCAAGAAGACGTGCAGGACAATCTGAAATTTCCAAAATCCGAAATTCTCGAAATTCCAGAAGACGTGACTTATCAAGAATGCCAAAATTGCAAAGATCTGAAATCTGAAATTCA</canonical_amplicon>
		<polymorphic_amplicon>AAACTCTTCAAATTACACGATTCGTCCCACGTCATCCAGGATTCCAGATCCTTCAGAATCCAGAAACCGCAGTTCAGAATTCAGAAATCCAGRAGCAAGAAGTTGTCCCACAAAATCCCCCAAATCCAGATGTTCTTCAAGAAGACGTGCAGGACAATCTGAAATTTCCAAAATCCGAAATTCTCGAAATTCCAGAAGACGTGACTTATCAAGAATGCCAAAATTGCAAAGATCTGAAATCTGAAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12555</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>212281</contig_pos>
        <strand>+</strand>
        <context>ACAAAATCCC[C/T]CAAATCCAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGTTCAGAATTCAGAAATCCAGGAGCAAGAAGTTGTCCCACAAAATCCC</left_flank>
        <right_flank>CAAATCCAGATGTTCTTCAAGAAGACGTGCAGGACAATCTGAAATTTCCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTAGATCAATTGATCTTCTTTCAAAATTTACCCGCATTTTTCCAATTTTTGTTTACAAAAACAGTTTGAATCACATATTTTTTCCCAAAATAAAATTTTTTTCTTCCTCGATATTCCAAAAACTGAAATTTCGAAAATTCCAGAAATCTCCAAAAATGAGCTACTATCCACCTCCGCCAAGCAACTATCCGTACCACGATTATCCATACAATTGGCCGCCGTTTCCACCATTTCTTCCGATTCATGGATTTTCGATGGACCAAGGATTCCAGGGATTCCCTCCACCACCAACATTCCCTCCAATGAATAGCTTTCCCGGATTTCCAGGACATCAGACTTCAGAATTCGTCCCGCAGAATTCTGGATTCTCAAATCCAGAAACTCTTCAAATTACACGATTCGTCCCACGTCATCCAGGATTCCAGATCCTTCAGAATCCAGAAACCGCAGTTCAGAATTCAGAAATCCAGGAGCAAGAAGTTGTCCCACAAAATCCCCCAAATCCAGATGTTCTTCAAGAAGACGTGCAGGACAATCTGAAATTTCCAAAATCCGAAATTCTCGAAATTCCAGAAGACGTGACTTATCAAGAATGCCAAAATTGCAAAGATCTGAAATCTGAAATTCAAGAAATAAAGGAAATTAGTGAGCAGAATCTGGATAACGTCAGAAATGCCTTATTTGAAGAGGCAAATGCTTCCAGTGAGTTTTTCTGAAACTTTGAGCTCAATTATCTCGGTTCCTATAAAATACATCAAAAAGGTGTTCGTTGATAAAATGTAGCTGATAAAATGGGAAATATTTTATCAGTTGACAGATTTGTGATATCTCTCCTAGGAACCAAGATAATTGAGCTCAACGTGCACAACTAGAGACCAACCAAGTGCTAATAGAAGCCCACACTTTACATAAACTTTGAGCTCAGTTATCACGGTTGCTATAATAGATATTAGAAAATGGATCACTAAAAATATAGCTGATCATATGTGAAATATTTT</canonical>
            <polymorphic>CACTAGATCAATTGATCTTCTTTCAAAATTTACCCGCATTTTTCCAATTTTTGTTTACAAAAACAGTTTGAATCACATATTTTTTCCCAAAATAAAATTTTTTTCTTCCTCGATATTCCAAAAACTGAAATTTCGAAAATTCCAGAAATCTCCAAAAATGAGCTACTATCCACCTCCGCCAAGCAACTATCCGTACCACGATTATCCATACAATTGGCCGCCGTTTCCACCATTTCTTCCGATTCATGGATTTTCGATGGACCAAGGATTCCAGGGATTCCCTCCACCACCAACATTCCCTCCAATGAATAGCTTTCCCGGATTTCCAGGACATCAGACTTCAGAATTCGTCCCGCAGAATTCTGGATTCTCAAATCCAGAAACTCTTCAAATTACACGATTCGTCCCACGTCATCCAGGATTCCAGATCCTTCAGAATCCAGAAACCGCAGTTCAGAATTCAGAAATCCAGGAGCAAGAAGTTGTCCCACAAAATCCCYCAAATCCAGATGTTCTTCAAGAAGACGTGCAGGACAATCTGAAATTTCCAAAATCCGAAATTCTCGAAATTCCAGAAGACGTGACTTATCAAGAATGCCAAAATTGCAAAGATCTGAAATCTGAAATTCAAGAAATAAAGGAAATTAGTGAGCAGAATCTGGATAACGTCAGAAATGCCTTATTTGAAGAGGCAAATGCTTCCAGTGAGTTTTTCTGAAACTTTGAGCTCAATTATCTCGGTTCCTATAAAATACATCAAAAAGGTGTTCGTTGATAAAATGTAGCTGATAAAATGGGAAATATTTTATCAGTTGACAGATTTGTGATATCTCTCCTAGGAACCAAGATAATTGAGCTCAACGTGCACAACTAGAGACCAACCAAGTGCTAATAGAAGCCCACACTTTACATAAACTTTGAGCTCAGTTATCACGGTTGCTATAATAGATATTAGAAAATGGATCACTAAAAATATAGCTGATCATATGTGAAATATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTCTTCAAATTACACGATTC</pcr_primer_p1>
		<pcr_primer_p2>TGAATTTCAGATTTCAGATCTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACTCTTCAAATTACACGATTCGTCCCACGTCATCCAGGATTCCAGATCCTTCAGAATCCAGAAACCGCAGTTCAGAATTCAGAAATCCAGGAGCAAGAAGTTGTCCCACAAAATCCCCCAAATCCAGATGTTCTTCAAGAAGACGTGCAGGACAATCTGAAATTTCCAAAATCCGAAATTCTCGAAATTCCAGAAGACGTGACTTATCAAGAATGCCAAAATTGCAAAGATCTGAAATCTGAAATTCA</canonical_amplicon>
		<polymorphic_amplicon>AAACTCTTCAAATTACACGATTCGTCCCACGTCATCCAGGATTCCAGATCCTTCAGAATCCAGAAACCGCAGTTCAGAATTCAGAAATCCAGGAGCAAGAAGTTGTCCCACAAAATCCCYCAAATCCAGATGTTCTTCAAGAAGACGTGCAGGACAATCTGAAATTTCCAAAATCCGAAATTCTCGAAATTCCAGAAGACGTGACTTATCAAGAATGCCAAAATTGCAAAGATCTGAAATCTGAAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12556</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>212295</contig_pos>
        <strand>+</strand>
        <context>ATCCAGATGT[C/T]CTTCAAGAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAATCCAGGAGCAAGAAGTTGTCCCACAAAATCCCCCAAATCCAGATGT</left_flank>
        <right_flank>CTTCAAGAAGACGTGCAGGACAATCTGAAATTTCCAAAATCCGAAATTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTTCTTTCAAAATTTACCCGCATTTTTCCAATTTTTGTTTACAAAAACAGTTTGAATCACATATTTTTTCCCAAAATAAAATTTTTTTCTTCCTCGATATTCCAAAAACTGAAATTTCGAAAATTCCAGAAATCTCCAAAAATGAGCTACTATCCACCTCCGCCAAGCAACTATCCGTACCACGATTATCCATACAATTGGCCGCCGTTTCCACCATTTCTTCCGATTCATGGATTTTCGATGGACCAAGGATTCCAGGGATTCCCTCCACCACCAACATTCCCTCCAATGAATAGCTTTCCCGGATTTCCAGGACATCAGACTTCAGAATTCGTCCCGCAGAATTCTGGATTCTCAAATCCAGAAACTCTTCAAATTACACGATTCGTCCCACGTCATCCAGGATTCCAGATCCTTCAGAATCCAGAAACCGCAGTTCAGAATTCAGAAATCCAGGAGCAAGAAGTTGTCCCACAAAATCCCCCAAATCCAGATGTTCTTCAAGAAGACGTGCAGGACAATCTGAAATTTCCAAAATCCGAAATTCTCGAAATTCCAGAAGACGTGACTTATCAAGAATGCCAAAATTGCAAAGATCTGAAATCTGAAATTCAAGAAATAAAGGAAATTAGTGAGCAGAATCTGGATAACGTCAGAAATGCCTTATTTGAAGAGGCAAATGCTTCCAGTGAGTTTTTCTGAAACTTTGAGCTCAATTATCTCGGTTCCTATAAAATACATCAAAAAGGTGTTCGTTGATAAAATGTAGCTGATAAAATGGGAAATATTTTATCAGTTGACAGATTTGTGATATCTCTCCTAGGAACCAAGATAATTGAGCTCAACGTGCACAACTAGAGACCAACCAAGTGCTAATAGAAGCCCACACTTTACATAAACTTTGAGCTCAGTTATCACGGTTGCTATAATAGATATTAGAAAATGGATCACTAAAAATATAGCTGATCATATGTGAAATATTTTATCAGTTAACAACT</canonical>
            <polymorphic>ATCTTCTTTCAAAATTTACCCGCATTTTTCCAATTTTTGTTTACAAAAACAGTTTGAATCACATATTTTTTCCCAAAATAAAATTTTTTTCTTCCTCGATATTCCAAAAACTGAAATTTCGAAAATTCCAGAAATCTCCAAAAATGAGCTACTATCCACCTCCGCCAAGCAACTATCCGTACCACGATTATCCATACAATTGGCCGCCGTTTCCACCATTTCTTCCGATTCATGGATTTTCGATGGACCAAGGATTCCAGGGATTCCCTCCACCACCAACATTCCCTCCAATGAATAGCTTTCCCGGATTTCCAGGACATCAGACTTCAGAATTCGTCCCGCAGAATTCTGGATTCTCAAATCCAGAAACTCTTCAAATTACACGATTCGTCCCACGTCATCCAGGATTCCAGATCCTTCAGAATCCAGAAACCGCAGTTCAGAATTCAGAAATCCAGGAGCAAGAAGTTGTCCCACAAAATCCCCCAAATCCAGATGTYCTTCAAGAAGACGTGCAGGACAATCTGAAATTTCCAAAATCCGAAATTCTCGAAATTCCAGAAGACGTGACTTATCAAGAATGCCAAAATTGCAAAGATCTGAAATCTGAAATTCAAGAAATAAAGGAAATTAGTGAGCAGAATCTGGATAACGTCAGAAATGCCTTATTTGAAGAGGCAAATGCTTCCAGTGAGTTTTTCTGAAACTTTGAGCTCAATTATCTCGGTTCCTATAAAATACATCAAAAAGGTGTTCGTTGATAAAATGTAGCTGATAAAATGGGAAATATTTTATCAGTTGACAGATTTGTGATATCTCTCCTAGGAACCAAGATAATTGAGCTCAACGTGCACAACTAGAGACCAACCAAGTGCTAATAGAAGCCCACACTTTACATAAACTTTGAGCTCAGTTATCACGGTTGCTATAATAGATATTAGAAAATGGATCACTAAAAATATAGCTGATCATATGTGAAATATTTTATCAGTTAACAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTCTTCAAATTACACGATTC</pcr_primer_p1>
		<pcr_primer_p2>TGAATTTCAGATTTCAGATCTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACTCTTCAAATTACACGATTCGTCCCACGTCATCCAGGATTCCAGATCCTTCAGAATCCAGAAACCGCAGTTCAGAATTCAGAAATCCAGGAGCAAGAAGTTGTCCCACAAAATCCCCCAAATCCAGATGTTCTTCAAGAAGACGTGCAGGACAATCTGAAATTTCCAAAATCCGAAATTCTCGAAATTCCAGAAGACGTGACTTATCAAGAATGCCAAAATTGCAAAGATCTGAAATCTGAAATTCA</canonical_amplicon>
		<polymorphic_amplicon>AAACTCTTCAAATTACACGATTCGTCCCACGTCATCCAGGATTCCAGATCCTTCAGAATCCAGAAACCGCAGTTCAGAATTCAGAAATCCAGGAGCAAGAAGTTGTCCCACAAAATCCCCCAAATCCAGATGTYCTTCAAGAAGACGTGCAGGACAATCTGAAATTTCCAAAATCCGAAATTCTCGAAATTCCAGAAGACGTGACTTATCAAGAATGCCAAAATTGCAAAGATCTGAAATCTGAAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12557</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>216835</contig_pos>
        <strand></strand>
        <context>TCTGAAGTGT[A/G]AGTTTTTTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCTACTGGATGGAGGTCTCGAAATTTGTTTTTTGATTTTTCTGAAGTGT</left_flank>
        <right_flank>AGTTTTTTTGGATTTATTAGAGTTTTAATATGATAGTAAAGTAAGACAAA</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACTAGCAATTTTGTTAAAATTAAGTACCTGCGGGATTTTCGCTTCTATTCCTAACTAGGTATTCATAGCCAGATGACGCAGTTAGACGTGGGTCCATGATAATCTGAAGAATCAATATTTTGTAGAGAACAAGAGAAAAGGAGAGAAAAATGAAGCTAAGGGAGCAGGAATATTAACATAATCTTTCCCTTGGTGGTCGTTATCAGAATGATAAAAGAGGGTAATAAGGTATCGGCTATTTGCATAAAACTATGAACACATAAGAAGAAAAGAGACGAAGAGAATGACTCAAAGGAAATTGCCGACAGTGATAATGATAATGAAGTAAGATAGAATATTCATTACTGTTTCTGTGTGCTCCAAGGTTACATGCCGCTTTCTTACTTTAGTAGGCAAAAAATTGAAATTTCAGACAAAAAATATTTTCAGATAACTTTGCCAATGACCACCTACTGGATGGAGGTCTCGAAATTTGTTTTTTGATTTTTCTGAAGTGTAAGTTTTTTTGGATTTATTAGAGTTTTAATATGATAGTAAAGTAAGACAAACTATCTAATACGGTTTCTTTGTGCTCCAACACTACATGCACAATCTCACAGCTCAGCCTACGCCCCGCCCCTTTTTTTACCGTAGTTGGACAACACCTGGGCTCTCTATTGCGCAACATAGTGCTACTGATGACCTTTTGCCCCAACGAACTACGCAGAAAATTATTGCGCAACAGATATTGGAGAGAGAGTGAGAGGATACTGAGAGGGTATAGGATAAAAAAACAGATCACGCTAAAGATATTCTGACAAGTAGCGAAAGGGGCCTATGGACTGAACGGTGTAGAAAAATAGTGATTTTCAACCTTAAATTGATAATCTGAATCAGAAAGCCTTGAAGAACTTTCGCTAAATTCAGAAAATAGAAACTAAAAACATCGCAAATGGAGAAAAGTGGCCAGGCACGGACATAAGATACGATGTTGTAGTAAATAATCCCTGACATGAAGT</canonical>
            <polymorphic>TAACTAGCAATTTTGTTAAAATTAAGTACCTGCGGGATTTTCGCTTCTATTCCTAACTAGGTATTCATAGCCAGATGACGCAGTTAGACGTGGGTCCATGATAATCTGAAGAATCAATATTTTGTAGAGAACAAGAGAAAAGGAGAGAAAAATGAAGCTAAGGGAGCAGGAATATTAACATAATCTTTCCCTTGGTGGTCGTTATCAGAATGATAAAAGAGGGTAATAAGGTATCGGCTATTTGCATAAAACTATGAACACATAAGAAGAAAAGAGACGAAGAGAATGACTCAAAGGAAATTGCCGACAGTGATAATGATAATGAAGTAAGATAGAATATTCATTACTGTTTCTGTGTGCTCCAAGGTTACATGCCGCTTTCTTACTTTAGTAGGCAAAAAATTGAAATTTCAGACAAAAAATATTTTCAGATAACTTTGCCAATGACCACCTACTGGATGGAGGTCTCGAAATTTGTTTTTTGATTTTTCTGAAGTGTRAGTTTTTTTGGATTTATTAGAGTTTTAATATGATAGTAAAGTAAGACAAACTATCTAATACGGTTTCTTTGTGCTCCAACACTACATGCACAATCTCACAGCTCAGCCTACGCCCCGCCCCTTTTTTTACCGTAGTTGGACAACACCTGGGCTCTCTATTGCGCAACATAGTGCTACTGATGACCTTTTGCCCCAACGAACTACGCAGAAAATTATTGCGCAACAGATATTGGAGAGAGAGTGAGAGGATACTGAGAGGGTATAGGATAAAAAAACAGATCACGCTAAAGATATTCTGACAAGTAGCGAAAGGGGCCTATGGACTGAACGGTGTAGAAAAATAGTGATTTTCAACCTTAAATTGATAATCTGAATCAGAAAGCCTTGAAGAACTTTCGCTAAATTCAGAAAATAGAAACTAAAAACATCGCAAATGGAGAAAAGTGGCCAGGCACGGACATAAGATACGATGTTGTAGTAAATAATCCCTGACATGAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGTGTGCTCCAAGGTTAC</pcr_primer_p1>
		<pcr_primer_p2>GTGAGATTGTGCATGTAGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTGTGTGCTCCAAGGTTACATGCCGCTTTCTTACTTTAGTAGGCAAAAAATTGAAATTTCAGACAAAAAATATTTTCAGATAACTTTGCCAATGACCACCTACTGGATGGAGGTCTCGAAATTTGTTTTTTGATTTTTCTGAAGTGTAAGTTTTTTTGGATTTATTAGAGTTTTAATATGATAGTAAAGTAAGACAAACTATCTAATACGGTTTCTTTGTGCTCCAACACTACATGCACAATCTCAC</canonical_amplicon>
		<polymorphic_amplicon>TCTGTGTGCTCCAAGGTTACATGCCGCTTTCTTACTTTAGTAGGCAAAAAATTGAAATTTCAGACAAAAAATATTTTCAGATAACTTTGCCAATGACCACCTACTGGATGGAGGTCTCGAAATTTGTTTTTTGATTTTTCTGAAGTGTRAGTTTTTTTGGATTTATTAGAGTTTTAATATGATAGTAAAGTAAGACAAACTATCTAATACGGTTTCTTTGTGCTCCAACACTACATGCACAATCTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12558</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>216742</contig_pos>
        <strand>+</strand>
        <context>AAAAAATTGA[A/T]ATTTCAGACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGCTCCAAGGTTACATGCCGCTTTCTTACTTTAGTAGGCAAAAAATTGA</left_flank>
        <right_flank>ATTTCAGACAAAAAATATTTTCAGATAACTTTGCCAATGACCACCTACTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCAGAAAGGCAACTCTTTGTGTTAGTCTTTGATTCTCCATAATCAAATTTTTCCACTCGTTCTCGGATTCTGAAATGGGTAATTAGTGCGTTAACTAGCAATTTTGTTAAAATTAAGTACCTGCGGGATTTTCGCTTCTATTCCTAACTAGGTATTCATAGCCAGATGACGCAGTTAGACGTGGGTCCATGATAATCTGAAGAATCAATATTTTGTAGAGAACAAGAGAAAAGGAGAGAAAAATGAAGCTAAGGGAGCAGGAATATTAACATAATCTTTCCCTTGGTGGTCGTTATCAGAATGATAAAAGAGGGTAATAAGGTATCGGCTATTTGCATAAAACTATGAACACATAAGAAGAAAAGAGACGAAGAGAATGACTCAAAGGAAATTGCCGACAGTGATAATGATAATGAAGTAAGATAGAATATTCATTACTGTTTCTGTGTGCTCCAAGGTTACATGCCGCTTTCTTACTTTAGTAGGCAAAAAATTGAAATTTCAGACAAAAAATATTTTCAGATAACTTTGCCAATGACCACCTACTGGATGGAGGTCTCGAAATTTGTTTTTTGATTTTTCTGAAGTGTAAGTTTTTTTGGATTTATTAGAGTTTTAATATGATAGTAAAGTAAGACAAACTATCTAATACGGTTTCTTTGTGCTCCAACACTACATGCACAATCTCACAGCTCAGCCTACGCCCCGCCCCTTTTTTTACCGTAGTTGGACAACACCTGGGCTCTCTATTGCGCAACATAGTGCTACTGATGACCTTTTGCCCCAACGAACTACGCAGAAAATTATTGCGCAACAGATATTGGAGAGAGAGTGAGAGGATACTGAGAGGGTATAGGATAAAAAAACAGATCACGCTAAAGATATTCTGACAAGTAGCGAAAGGGGCCTATGGACTGAACGGTGTAGAAAAATAGTGATTTTCAACCTTAAATTGATAATCTGAATCAGAAAGCCTTGAAGAACTTTCGCTAAATTCA</canonical>
            <polymorphic>CTCCAGAAAGGCAACTCTTTGTGTTAGTCTTTGATTCTCCATAATCAAATTTTTCCACTCGTTCTCGGATTCTGAAATGGGTAATTAGTGCGTTAACTAGCAATTTTGTTAAAATTAAGTACCTGCGGGATTTTCGCTTCTATTCCTAACTAGGTATTCATAGCCAGATGACGCAGTTAGACGTGGGTCCATGATAATCTGAAGAATCAATATTTTGTAGAGAACAAGAGAAAAGGAGAGAAAAATGAAGCTAAGGGAGCAGGAATATTAACATAATCTTTCCCTTGGTGGTCGTTATCAGAATGATAAAAGAGGGTAATAAGGTATCGGCTATTTGCATAAAACTATGAACACATAAGAAGAAAAGAGACGAAGAGAATGACTCAAAGGAAATTGCCGACAGTGATAATGATAATGAAGTAAGATAGAATATTCATTACTGTTTCTGTGTGCTCCAAGGTTACATGCCGCTTTCTTACTTTAGTAGGCAAAAAATTGAWATTTCAGACAAAAAATATTTTCAGATAACTTTGCCAATGACCACCTACTGGATGGAGGTCTCGAAATTTGTTTTTTGATTTTTCTGAAGTGTAAGTTTTTTTGGATTTATTAGAGTTTTAATATGATAGTAAAGTAAGACAAACTATCTAATACGGTTTCTTTGTGCTCCAACACTACATGCACAATCTCACAGCTCAGCCTACGCCCCGCCCCTTTTTTTACCGTAGTTGGACAACACCTGGGCTCTCTATTGCGCAACATAGTGCTACTGATGACCTTTTGCCCCAACGAACTACGCAGAAAATTATTGCGCAACAGATATTGGAGAGAGAGTGAGAGGATACTGAGAGGGTATAGGATAAAAAAACAGATCACGCTAAAGATATTCTGACAAGTAGCGAAAGGGGCCTATGGACTGAACGGTGTAGAAAAATAGTGATTTTCAACCTTAAATTGATAATCTGAATCAGAAAGCCTTGAAGAACTTTCGCTAAATTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>452 430 65 47 6</canonical_bands>
                <polymorphic_bands>517 430 47 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>279 239 149 102 65 47 42 35 19 11 6 6</canonical_bands>
                <polymorphic_bands>279 239 149 102 71 47 42 35 19 11 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGTGTGCTCCAAGGTTAC</pcr_primer_p1>
		<pcr_primer_p2>GTGAGATTGTGCATGTAGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTGTGTGCTCCAAGGTTACATGCCGCTTTCTTACTTTAGTAGGCAAAAAATTGAAATTTCAGACAAAAAATATTTTCAGATAACTTTGCCAATGACCACCTACTGGATGGAGGTCTCGAAATTTGTTTTTTGATTTTTCTGAAGTGTAAGTTTTTTTGGATTTATTAGAGTTTTAATATGATAGTAAAGTAAGACAAACTATCTAATACGGTTTCTTTGTGCTCCAACACTACATGCACAATCTCAC</canonical_amplicon>
		<polymorphic_amplicon>TCTGTGTGCTCCAAGGTTACATGCCGCTTTCTTACTTTAGTAGGCAAAAAATTGAWATTTCAGACAAAAAATATTTTCAGATAACTTTGCCAATGACCACCTACTGGATGGAGGTCTCGAAATTTGTTTTTTGATTTTTCTGAAGTGTAAGTTTTTTTGGATTTATTAGAGTTTTAATATGATAGTAAAGTAAGACAAACTATCTAATACGGTTTCTTTGTGCTCCAACACTACATGCACAATCTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12559</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>216589</contig_pos>
        <strand>+</strand>
        <context>GCATAAAACT[A/G]TGAACACATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCAGAATGATAAAAGAGGGTAATAAGGTATCGGCTATTTGCATAAAACT</left_flank>
        <right_flank>TGAACACATAAGAAGAAAAGAGACGAAGAGAATGACTCAAAGGAAATTGC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATTATGTCAAAGTTACCGATTTAGGATACGTTTTAGGTCTTACTATAATTTAAACTAAATTAAAACCCTCACCTCTCACCACCACAAGAGCATTCAGTCTATCAATCTCTTTTGTGAAGCCGTCAAAATTCTCTTGATTTTTCCCGATTTTCTCCAGAAAGGCAACTCTTTGTGTTAGTCTTTGATTCTCCATAATCAAATTTTTCCACTCGTTCTCGGATTCTGAAATGGGTAATTAGTGCGTTAACTAGCAATTTTGTTAAAATTAAGTACCTGCGGGATTTTCGCTTCTATTCCTAACTAGGTATTCATAGCCAGATGACGCAGTTAGACGTGGGTCCATGATAATCTGAAGAATCAATATTTTGTAGAGAACAAGAGAAAAGGAGAGAAAAATGAAGCTAAGGGAGCAGGAATATTAACATAATCTTTCCCTTGGTGGTCGTTATCAGAATGATAAAAGAGGGTAATAAGGTATCGGCTATTTGCATAAAACTATGAACACATAAGAAGAAAAGAGACGAAGAGAATGACTCAAAGGAAATTGCCGACAGTGATAATGATAATGAAGTAAGATAGAATATTCATTACTGTTTCTGTGTGCTCCAAGGTTACATGCCGCTTTCTTACTTTAGTAGGCAAAAAATTGAAATTTCAGACAAAAAATATTTTCAGATAACTTTGCCAATGACCACCTACTGGATGGAGGTCTCGAAATTTGTTTTTTGATTTTTCTGAAGTGTAAGTTTTTTTGGATTTATTAGAGTTTTAATATGATAGTAAAGTAAGACAAACTATCTAATACGGTTTCTTTGTGCTCCAACACTACATGCACAATCTCACAGCTCAGCCTACGCCCCGCCCCTTTTTTTACCGTAGTTGGACAACACCTGGGCTCTCTATTGCGCAACATAGTGCTACTGATGACCTTTTGCCCCAACGAACTACGCAGAAAATTATTGCGCAACAGATATTGGAGAGAGAGTGAGAGGATACTG</canonical>
            <polymorphic>ACATTATGTCAAAGTTACCGATTTAGGATACGTTTTAGGTCTTACTATAATTTAAACTAAATTAAAACCCTCACCTCTCACCACCACAAGAGCATTCAGTCTATCAATCTCTTTTGTGAAGCCGTCAAAATTCTCTTGATTTTTCCCGATTTTCTCCAGAAAGGCAACTCTTTGTGTTAGTCTTTGATTCTCCATAATCAAATTTTTCCACTCGTTCTCGGATTCTGAAATGGGTAATTAGTGCGTTAACTAGCAATTTTGTTAAAATTAAGTACCTGCGGGATTTTCGCTTCTATTCCTAACTAGGTATTCATAGCCAGATGACGCAGTTAGACGTGGGTCCATGATAATCTGAAGAATCAATATTTTGTAGAGAACAAGAGAAAAGGAGAGAAAAATGAAGCTAAGGGAGCAGGAATATTAACATAATCTTTCCCTTGGTGGTCGTTATCAGAATGATAAAAGAGGGTAATAAGGTATCGGCTATTTGCATAAAACTRTGAACACATAAGAAGAAAAGAGACGAAGAGAATGACTCAAAGGAAATTGCCGACAGTGATAATGATAATGAAGTAAGATAGAATATTCATTACTGTTTCTGTGTGCTCCAAGGTTACATGCCGCTTTCTTACTTTAGTAGGCAAAAAATTGAAATTTCAGACAAAAAATATTTTCAGATAACTTTGCCAATGACCACCTACTGGATGGAGGTCTCGAAATTTGTTTTTTGATTTTTCTGAAGTGTAAGTTTTTTTGGATTTATTAGAGTTTTAATATGATAGTAAAGTAAGACAAACTATCTAATACGGTTTCTTTGTGCTCCAACACTACATGCACAATCTCACAGCTCAGCCTACGCCCCGCCCCTTTTTTTACCGTAGTTGGACAACACCTGGGCTCTCTATTGCGCAACATAGTGCTACTGATGACCTTTTGCCCCAACGAACTACGCAGAAAATTATTGCGCAACAGATATTGGAGAGAGAGTGAGAGGATACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAATATTTTGTAGAGAACAAGAGA</pcr_primer_p1>
		<pcr_primer_p2>AGCACACAGAAACAGTAATGAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCAATATTTTGTAGAGAACAAGAGAAAAGGAGAGAAAAATGAAGCTAAGGGAGCAGGAATATTAACATAATCTTTCCCTTGGTGGTCGTTATCAGAATGATAAAAGAGGGTAATAAGGTATCGGCTATTTGCATAAAACTATGAACACATAAGAAGAAAAGAGACGAAGAGAATGACTCAAAGGAAATTGCCGACAGTGATAATGATAATGAAGTAAGATAGAATATTCATTACTGTTTCTGTGTGCT</canonical_amplicon>
		<polymorphic_amplicon>TCAATATTTTGTAGAGAACAAGAGAAAAGGAGAGAAAAATGAAGCTAAGGGAGCAGGAATATTAACATAATCTTTCCCTTGGTGGTCGTTATCAGAATGATAAAAGAGGGTAATAAGGTATCGGCTATTTGCATAAAACTRTGAACACATAAGAAGAAAAGAGACGAAGAGAATGACTCAAAGGAAATTGCCGACAGTGATAATGATAATGAAGTAAGATAGAATATTCATTACTGTTTCTGTGTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12560</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>216490</contig_pos>
        <strand>+</strand>
        <context>GAGAAAAATG[A/G]AGCTAAGGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGAAGAATCAATATTTTGTAGAGAACAAGAGAAAAGGAGAGAAAAATG</left_flank>
        <right_flank>AGCTAAGGGAGCAGGAATATTAACATAATCTTTCCCTTGGTGGTCGTTAT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATGTAAGTTGACATTTTTTCCATATCTGTCACAGGAACCGAGATAATTCAGCTCAAAATTCATGTACTAATTGGGCTTCTGTTATAGCATTTTCGGTACATTATGTCAAAGTTACCGATTTAGGATACGTTTTAGGTCTTACTATAATTTAAACTAAATTAAAACCCTCACCTCTCACCACCACAAGAGCATTCAGTCTATCAATCTCTTTTGTGAAGCCGTCAAAATTCTCTTGATTTTTCCCGATTTTCTCCAGAAAGGCAACTCTTTGTGTTAGTCTTTGATTCTCCATAATCAAATTTTTCCACTCGTTCTCGGATTCTGAAATGGGTAATTAGTGCGTTAACTAGCAATTTTGTTAAAATTAAGTACCTGCGGGATTTTCGCTTCTATTCCTAACTAGGTATTCATAGCCAGATGACGCAGTTAGACGTGGGTCCATGATAATCTGAAGAATCAATATTTTGTAGAGAACAAGAGAAAAGGAGAGAAAAATGAAGCTAAGGGAGCAGGAATATTAACATAATCTTTCCCTTGGTGGTCGTTATCAGAATGATAAAAGAGGGTAATAAGGTATCGGCTATTTGCATAAAACTATGAACACATAAGAAGAAAAGAGACGAAGAGAATGACTCAAAGGAAATTGCCGACAGTGATAATGATAATGAAGTAAGATAGAATATTCATTACTGTTTCTGTGTGCTCCAAGGTTACATGCCGCTTTCTTACTTTAGTAGGCAAAAAATTGAAATTTCAGACAAAAAATATTTTCAGATAACTTTGCCAATGACCACCTACTGGATGGAGGTCTCGAAATTTGTTTTTTGATTTTTCTGAAGTGTAAGTTTTTTTGGATTTATTAGAGTTTTAATATGATAGTAAAGTAAGACAAACTATCTAATACGGTTTCTTTGTGCTCCAACACTACATGCACAATCTCACAGCTCAGCCTACGCCCCGCCCCTTTTTTTACCGTAGTTGGACAACACCTGGGCTCT</canonical>
            <polymorphic>TTATGTAAGTTGACATTTTTTCCATATCTGTCACAGGAACCGAGATAATTCAGCTCAAAATTCATGTACTAATTGGGCTTCTGTTATAGCATTTTCGGTACATTATGTCAAAGTTACCGATTTAGGATACGTTTTAGGTCTTACTATAATTTAAACTAAATTAAAACCCTCACCTCTCACCACCACAAGAGCATTCAGTCTATCAATCTCTTTTGTGAAGCCGTCAAAATTCTCTTGATTTTTCCCGATTTTCTCCAGAAAGGCAACTCTTTGTGTTAGTCTTTGATTCTCCATAATCAAATTTTTCCACTCGTTCTCGGATTCTGAAATGGGTAATTAGTGCGTTAACTAGCAATTTTGTTAAAATTAAGTACCTGCGGGATTTTCGCTTCTATTCCTAACTAGGTATTCATAGCCAGATGACGCAGTTAGACGTGGGTCCATGATAATCTGAAGAATCAATATTTTGTAGAGAACAAGAGAAAAGGAGAGAAAAATGRAGCTAAGGGAGCAGGAATATTAACATAATCTTTCCCTTGGTGGTCGTTATCAGAATGATAAAAGAGGGTAATAAGGTATCGGCTATTTGCATAAAACTATGAACACATAAGAAGAAAAGAGACGAAGAGAATGACTCAAAGGAAATTGCCGACAGTGATAATGATAATGAAGTAAGATAGAATATTCATTACTGTTTCTGTGTGCTCCAAGGTTACATGCCGCTTTCTTACTTTAGTAGGCAAAAAATTGAAATTTCAGACAAAAAATATTTTCAGATAACTTTGCCAATGACCACCTACTGGATGGAGGTCTCGAAATTTGTTTTTTGATTTTTCTGAAGTGTAAGTTTTTTTGGATTTATTAGAGTTTTAATATGATAGTAAAGTAAGACAAACTATCTAATACGGTTTCTTTGTGCTCCAACACTACATGCACAATCTCACAGCTCAGCCTACGCCCCGCCCCTTTTTTTACCGTAGTTGGACAACACCTGGGCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTCGCTTCTATTCCTAACT</pcr_primer_p1>
		<pcr_primer_p2>TCTCTTCGTCTCTTTTCTTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATTTTCGCTTCTATTCCTAACTAGGTATTCATAGCCAGATGACGCAGTTAGACGTGGGTCCATGATAATCTGAAGAATCAATATTTTGTAGAGAACAAGAGAAAAGGAGAGAAAAATGAAGCTAAGGGAGCAGGAATATTAACATAATCTTTCCCTTGGTGGTCGTTATCAGAATGATAAAAGAGGGTAATAAGGTATCGGCTATTTGCATAAAACTATGAACACATAAGAAGAAAAGAGACGAAGAGA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTCGCTTCTATTCCTAACTAGGTATTCATAGCCAGATGACGCAGTTAGACGTGGGTCCATGATAATCTGAAGAATCAATATTTTGTAGAGAACAAGAGAAAAGGAGAGAAAAATGRAGCTAAGGGAGCAGGAATATTAACATAATCTTTCCCTTGGTGGTCGTTATCAGAATGATAAAAGAGGGTAATAAGGTATCGGCTATTTGCATAAAACTATGAACACATAAGAAGAAAAGAGACGAAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12561</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>216478</contig_pos>
        <strand>+</strand>
        <context>AAGAGAAAAG[A/G]AGAGAAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTCCATGATAATCTGAAGAATCAATATTTTGTAGAGAACAAGAGAAAAG</left_flank>
        <right_flank>AGAGAAAAATGAAGCTAAGGGAGCAGGAATATTAACATAATCTTTCCCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATGATAATCATTATGTAAGTTGACATTTTTTCCATATCTGTCACAGGAACCGAGATAATTCAGCTCAAAATTCATGTACTAATTGGGCTTCTGTTATAGCATTTTCGGTACATTATGTCAAAGTTACCGATTTAGGATACGTTTTAGGTCTTACTATAATTTAAACTAAATTAAAACCCTCACCTCTCACCACCACAAGAGCATTCAGTCTATCAATCTCTTTTGTGAAGCCGTCAAAATTCTCTTGATTTTTCCCGATTTTCTCCAGAAAGGCAACTCTTTGTGTTAGTCTTTGATTCTCCATAATCAAATTTTTCCACTCGTTCTCGGATTCTGAAATGGGTAATTAGTGCGTTAACTAGCAATTTTGTTAAAATTAAGTACCTGCGGGATTTTCGCTTCTATTCCTAACTAGGTATTCATAGCCAGATGACGCAGTTAGACGTGGGTCCATGATAATCTGAAGAATCAATATTTTGTAGAGAACAAGAGAAAAGGAGAGAAAAATGAAGCTAAGGGAGCAGGAATATTAACATAATCTTTCCCTTGGTGGTCGTTATCAGAATGATAAAAGAGGGTAATAAGGTATCGGCTATTTGCATAAAACTATGAACACATAAGAAGAAAAGAGACGAAGAGAATGACTCAAAGGAAATTGCCGACAGTGATAATGATAATGAAGTAAGATAGAATATTCATTACTGTTTCTGTGTGCTCCAAGGTTACATGCCGCTTTCTTACTTTAGTAGGCAAAAAATTGAAATTTCAGACAAAAAATATTTTCAGATAACTTTGCCAATGACCACCTACTGGATGGAGGTCTCGAAATTTGTTTTTTGATTTTTCTGAAGTGTAAGTTTTTTTGGATTTATTAGAGTTTTAATATGATAGTAAAGTAAGACAAACTATCTAATACGGTTTCTTTGTGCTCCAACACTACATGCACAATCTCACAGCTCAGCCTACGCCCCGCCCCTTTTTTTACCGTAGTTGGACAA</canonical>
            <polymorphic>TTATGATAATCATTATGTAAGTTGACATTTTTTCCATATCTGTCACAGGAACCGAGATAATTCAGCTCAAAATTCATGTACTAATTGGGCTTCTGTTATAGCATTTTCGGTACATTATGTCAAAGTTACCGATTTAGGATACGTTTTAGGTCTTACTATAATTTAAACTAAATTAAAACCCTCACCTCTCACCACCACAAGAGCATTCAGTCTATCAATCTCTTTTGTGAAGCCGTCAAAATTCTCTTGATTTTTCCCGATTTTCTCCAGAAAGGCAACTCTTTGTGTTAGTCTTTGATTCTCCATAATCAAATTTTTCCACTCGTTCTCGGATTCTGAAATGGGTAATTAGTGCGTTAACTAGCAATTTTGTTAAAATTAAGTACCTGCGGGATTTTCGCTTCTATTCCTAACTAGGTATTCATAGCCAGATGACGCAGTTAGACGTGGGTCCATGATAATCTGAAGAATCAATATTTTGTAGAGAACAAGAGAAAAGRAGAGAAAAATGAAGCTAAGGGAGCAGGAATATTAACATAATCTTTCCCTTGGTGGTCGTTATCAGAATGATAAAAGAGGGTAATAAGGTATCGGCTATTTGCATAAAACTATGAACACATAAGAAGAAAAGAGACGAAGAGAATGACTCAAAGGAAATTGCCGACAGTGATAATGATAATGAAGTAAGATAGAATATTCATTACTGTTTCTGTGTGCTCCAAGGTTACATGCCGCTTTCTTACTTTAGTAGGCAAAAAATTGAAATTTCAGACAAAAAATATTTTCAGATAACTTTGCCAATGACCACCTACTGGATGGAGGTCTCGAAATTTGTTTTTTGATTTTTCTGAAGTGTAAGTTTTTTTGGATTTATTAGAGTTTTAATATGATAGTAAAGTAAGACAAACTATCTAATACGGTTTCTTTGTGCTCCAACACTACATGCACAATCTCACAGCTCAGCCTACGCCCCGCCCCTTTTTTTACCGTAGTTGGACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTCGCTTCTATTCCTAACT</pcr_primer_p1>
		<pcr_primer_p2>TCTCTTCGTCTCTTTTCTTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATTTTCGCTTCTATTCCTAACTAGGTATTCATAGCCAGATGACGCAGTTAGACGTGGGTCCATGATAATCTGAAGAATCAATATTTTGTAGAGAACAAGAGAAAAGGAGAGAAAAATGAAGCTAAGGGAGCAGGAATATTAACATAATCTTTCCCTTGGTGGTCGTTATCAGAATGATAAAAGAGGGTAATAAGGTATCGGCTATTTGCATAAAACTATGAACACATAAGAAGAAAAGAGACGAAGAGA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTCGCTTCTATTCCTAACTAGGTATTCATAGCCAGATGACGCAGTTAGACGTGGGTCCATGATAATCTGAAGAATCAATATTTTGTAGAGAACAAGAGAAAAGRAGAGAAAAATGAAGCTAAGGGAGCAGGAATATTAACATAATCTTTCCCTTGGTGGTCGTTATCAGAATGATAAAAGAGGGTAATAAGGTATCGGCTATTTGCATAAAACTATGAACACATAAGAAGAAAAGAGACGAAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12562</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>216416</contig_pos>
        <strand>+</strand>
        <context>CCAGATGACG[C/T]AGTTAGACGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCGGGATTTTCGCTTCTATTCCTAACTAGGTATTCATAGCCAGATGACG</left_flank>
        <right_flank>AGTTAGACGTGGGTCCATGATAATCTGAAGAATCAATATTTTGTAGAGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTATATCTCATTCTCTGTGAGAGATATCAAAAATTTGTAAATTGATAAAATCTACCTGATTTTATGATAATCATTATGTAAGTTGACATTTTTTCCATATCTGTCACAGGAACCGAGATAATTCAGCTCAAAATTCATGTACTAATTGGGCTTCTGTTATAGCATTTTCGGTACATTATGTCAAAGTTACCGATTTAGGATACGTTTTAGGTCTTACTATAATTTAAACTAAATTAAAACCCTCACCTCTCACCACCACAAGAGCATTCAGTCTATCAATCTCTTTTGTGAAGCCGTCAAAATTCTCTTGATTTTTCCCGATTTTCTCCAGAAAGGCAACTCTTTGTGTTAGTCTTTGATTCTCCATAATCAAATTTTTCCACTCGTTCTCGGATTCTGAAATGGGTAATTAGTGCGTTAACTAGCAATTTTGTTAAAATTAAGTACCTGCGGGATTTTCGCTTCTATTCCTAACTAGGTATTCATAGCCAGATGACGCAGTTAGACGTGGGTCCATGATAATCTGAAGAATCAATATTTTGTAGAGAACAAGAGAAAAGGAGAGAAAAATGAAGCTAAGGGAGCAGGAATATTAACATAATCTTTCCCTTGGTGGTCGTTATCAGAATGATAAAAGAGGGTAATAAGGTATCGGCTATTTGCATAAAACTATGAACACATAAGAAGAAAAGAGACGAAGAGAATGACTCAAAGGAAATTGCCGACAGTGATAATGATAATGAAGTAAGATAGAATATTCATTACTGTTTCTGTGTGCTCCAAGGTTACATGCCGCTTTCTTACTTTAGTAGGCAAAAAATTGAAATTTCAGACAAAAAATATTTTCAGATAACTTTGCCAATGACCACCTACTGGATGGAGGTCTCGAAATTTGTTTTTTGATTTTTCTGAAGTGTAAGTTTTTTTGGATTTATTAGAGTTTTAATATGATAGTAAAGTAAGACAAACTATCTAATACGGTTTCTTTGTGCTCCAACA</canonical>
            <polymorphic>CTTATATCTCATTCTCTGTGAGAGATATCAAAAATTTGTAAATTGATAAAATCTACCTGATTTTATGATAATCATTATGTAAGTTGACATTTTTTCCATATCTGTCACAGGAACCGAGATAATTCAGCTCAAAATTCATGTACTAATTGGGCTTCTGTTATAGCATTTTCGGTACATTATGTCAAAGTTACCGATTTAGGATACGTTTTAGGTCTTACTATAATTTAAACTAAATTAAAACCCTCACCTCTCACCACCACAAGAGCATTCAGTCTATCAATCTCTTTTGTGAAGCCGTCAAAATTCTCTTGATTTTTCCCGATTTTCTCCAGAAAGGCAACTCTTTGTGTTAGTCTTTGATTCTCCATAATCAAATTTTTCCACTCGTTCTCGGATTCTGAAATGGGTAATTAGTGCGTTAACTAGCAATTTTGTTAAAATTAAGTACCTGCGGGATTTTCGCTTCTATTCCTAACTAGGTATTCATAGCCAGATGACGYAGTTAGACGTGGGTCCATGATAATCTGAAGAATCAATATTTTGTAGAGAACAAGAGAAAAGGAGAGAAAAATGAAGCTAAGGGAGCAGGAATATTAACATAATCTTTCCCTTGGTGGTCGTTATCAGAATGATAAAAGAGGGTAATAAGGTATCGGCTATTTGCATAAAACTATGAACACATAAGAAGAAAAGAGACGAAGAGAATGACTCAAAGGAAATTGCCGACAGTGATAATGATAATGAAGTAAGATAGAATATTCATTACTGTTTCTGTGTGCTCCAAGGTTACATGCCGCTTTCTTACTTTAGTAGGCAAAAAATTGAAATTTCAGACAAAAAATATTTTCAGATAACTTTGCCAATGACCACCTACTGGATGGAGGTCTCGAAATTTGTTTTTTGATTTTTCTGAAGTGTAAGTTTTTTTGGATTTATTAGAGTTTTAATATGATAGTAAAGTAAGACAAACTATCTAATACGGTTTCTTTGTGCTCCAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGTGCGTTAACTAGCAATTTT</pcr_primer_p1>
		<pcr_primer_p2>CCGATACCTTATTACCCTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTAGTGCGTTAACTAGCAATTTTGTTAAAATTAAGTACCTGCGGGATTTTCGCTTCTATTCCTAACTAGGTATTCATAGCCAGATGACGCAGTTAGACGTGGGTCCATGATAATCTGAAGAATCAATATTTTGTAGAGAACAAGAGAAAAGGAGAGAAAAATGAAGCTAAGGGAGCAGGAATATTAACATAATCTTTCCCTTGGTGGTCGTTATCAGAATGATAAAAGAGGGTAATAAGGTATCGG</canonical_amplicon>
		<polymorphic_amplicon>TTAGTGCGTTAACTAGCAATTTTGTTAAAATTAAGTACCTGCGGGATTTTCGCTTCTATTCCTAACTAGGTATTCATAGCCAGATGACGYAGTTAGACGTGGGTCCATGATAATCTGAAGAATCAATATTTTGTAGAGAACAAGAGAAAAGGAGAGAAAAATGAAGCTAAGGGAGCAGGAATATTAACATAATCTTTCCCTTGGTGGTCGTTATCAGAATGATAAAAGAGGGTAATAAGGTATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12563</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>216279</contig_pos>
        <strand>+</strand>
        <context>GTCTTTGATT[C/T]TCCATAATCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTCCCGATTTTCTCCAGAAAGGCAACTCTTTGTGTTAGTCTTTGATT</left_flank>
        <right_flank>TCCATAATCAAATTTTTCCACTCGTTCTCGGATTCTGAAATGGGTAATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGGAGATATCATATATTATCAGCTACATTTTATCAGTTAACACATTTTTGATATCTTTTATAGGAACCGAGATAATAACCCTTGGATGTGCTGCGCCGCCACTAGCTGAGCCGCCCCAAATCATCAAATTTGAACTCTTATATCTCATTCTCTGTGAGAGATATCAAAAATTTGTAAATTGATAAAATCTACCTGATTTTATGATAATCATTATGTAAGTTGACATTTTTTCCATATCTGTCACAGGAACCGAGATAATTCAGCTCAAAATTCATGTACTAATTGGGCTTCTGTTATAGCATTTTCGGTACATTATGTCAAAGTTACCGATTTAGGATACGTTTTAGGTCTTACTATAATTTAAACTAAATTAAAACCCTCACCTCTCACCACCACAAGAGCATTCAGTCTATCAATCTCTTTTGTGAAGCCGTCAAAATTCTCTTGATTTTTCCCGATTTTCTCCAGAAAGGCAACTCTTTGTGTTAGTCTTTGATTCTCCATAATCAAATTTTTCCACTCGTTCTCGGATTCTGAAATGGGTAATTAGTGCGTTAACTAGCAATTTTGTTAAAATTAAGTACCTGCGGGATTTTCGCTTCTATTCCTAACTAGGTATTCATAGCCAGATGACGCAGTTAGACGTGGGTCCATGATAATCTGAAGAATCAATATTTTGTAGAGAACAAGAGAAAAGGAGAGAAAAATGAAGCTAAGGGAGCAGGAATATTAACATAATCTTTCCCTTGGTGGTCGTTATCAGAATGATAAAAGAGGGTAATAAGGTATCGGCTATTTGCATAAAACTATGAACACATAAGAAGAAAAGAGACGAAGAGAATGACTCAAAGGAAATTGCCGACAGTGATAATGATAATGAAGTAAGATAGAATATTCATTACTGTTTCTGTGTGCTCCAAGGTTACATGCCGCTTTCTTACTTTAGTAGGCAAAAAATTGAAATTTCAGACAAAAAATATTTTCAGATAACTTTGCCAA</canonical>
            <polymorphic>TAGGAGATATCATATATTATCAGCTACATTTTATCAGTTAACACATTTTTGATATCTTTTATAGGAACCGAGATAATAACCCTTGGATGTGCTGCGCCGCCACTAGCTGAGCCGCCCCAAATCATCAAATTTGAACTCTTATATCTCATTCTCTGTGAGAGATATCAAAAATTTGTAAATTGATAAAATCTACCTGATTTTATGATAATCATTATGTAAGTTGACATTTTTTCCATATCTGTCACAGGAACCGAGATAATTCAGCTCAAAATTCATGTACTAATTGGGCTTCTGTTATAGCATTTTCGGTACATTATGTCAAAGTTACCGATTTAGGATACGTTTTAGGTCTTACTATAATTTAAACTAAATTAAAACCCTCACCTCTCACCACCACAAGAGCATTCAGTCTATCAATCTCTTTTGTGAAGCCGTCAAAATTCTCTTGATTTTTCCCGATTTTCTCCAGAAAGGCAACTCTTTGTGTTAGTCTTTGATTYTCCATAATCAAATTTTTCCACTCGTTCTCGGATTCTGAAATGGGTAATTAGTGCGTTAACTAGCAATTTTGTTAAAATTAAGTACCTGCGGGATTTTCGCTTCTATTCCTAACTAGGTATTCATAGCCAGATGACGCAGTTAGACGTGGGTCCATGATAATCTGAAGAATCAATATTTTGTAGAGAACAAGAGAAAAGGAGAGAAAAATGAAGCTAAGGGAGCAGGAATATTAACATAATCTTTCCCTTGGTGGTCGTTATCAGAATGATAAAAGAGGGTAATAAGGTATCGGCTATTTGCATAAAACTATGAACACATAAGAAGAAAAGAGACGAAGAGAATGACTCAAAGGAAATTGCCGACAGTGATAATGATAATGAAGTAAGATAGAATATTCATTACTGTTTCTGTGTGCTCCAAGGTTACATGCCGCTTTCTTACTTTAGTAGGCAAAAAATTGAAATTTCAGACAAAAAATATTTTCAGATAACTTTGCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>496 177 156 136 35</canonical_bands>
                <polymorphic_bands>531 177 156 136</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>496 333 136 35</canonical_bands>
                <polymorphic_bands>531 333 136</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTAAATTAAAACCCTCACCTC</pcr_primer_p1>
		<pcr_primer_p2>AGTTAGGAATAGAAGCGAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACTAAATTAAAACCCTCACCTCTCACCACCACAAGAGCATTCAGTCTATCAATCTCTTTTGTGAAGCCGTCAAAATTCTCTTGATTTTTCCCGATTTTCTCCAGAAAGGCAACTCTTTGTGTTAGTCTTTGATTCTCCATAATCAAATTTTTCCACTCGTTCTCGGATTCTGAAATGGGTAATTAGTGCGTTAACTAGCAATTTTGTTAAAATTAAGTACCTGCGGGATTTTCGCTTCTATTCCTAACT</canonical_amplicon>
		<polymorphic_amplicon>AACTAAATTAAAACCCTCACCTCTCACCACCACAAGAGCATTCAGTCTATCAATCTCTTTTGTGAAGCCGTCAAAATTCTCTTGATTTTTCCCGATTTTCTCCAGAAAGGCAACTCTTTGTGTTAGTCTTTGATTYTCCATAATCAAATTTTTCCACTCGTTCTCGGATTCTGAAATGGGTAATTAGTGCGTTAACTAGCAATTTTGTTAAAATTAAGTACCTGCGGGATTTTCGCTTCTATTCCTAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12568</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>237364</contig_pos>
        <strand>+</strand>
        <context>ATTCGACCAG[C/G]TTGGTCCATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAAGGAATTAAATCTAGTGACCTTATTTCACATACCTTGGATTCGACCAG</left_flank>
        <right_flank>TTGGTCCATAGCTTGACTGAAATTAAGCGTGAGCAATAGCAAATCGATAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTAAAAATGATAATTCTAAAAATCAAAGTGATTCTTAATTTTCAGCAATAGAGTAATCTGCCTGGAAAGTTTCAGAAAGCTCCGATCACTTAGAAGAAGGTTACAACGAGTTTTTTATGCACAAAGACTTTTCCCCACACTGTCAGTTTTGAGCTCAATCATCTCGGCTCTTATAAGAGATATCGAAAATGTTTCAGATGACAAAATATTGATGATTTTATGATCAACAATTTATCAGTTGACAACTTTTTCATATCTTTAGCAGGAACCGTGATAACTTGGCACTAAGTTTAAAGTGAAGTGACCCTTCTATTACAGGTCTTTCGGTAATTTTGTGAAACTTACATTGAGTTATATTTCTCTCCTGGCGCGCCATTTCCCTCTGCTCAATCAAGGTTCTCACAGCGGCGTCCATTTCTCAAAGCTCGATCTCCAATTCTAAAGTGATAAGGAATTAAATCTAGTGACCTTATTTCACATACCTTGGATTCGACCAGCTTGGTCCATAGCTTGACTGAAATTAAGCGTGAGCAATAGCAAATCGATAGAAACACCAGAAAAAAAATGATGATGACAATATAAAGTGAGGGCCAGGGAACGAGAAACCGTTTGTTTGCTTTGGTTCATGTAAATTTTTTGTTTTTTCTCACATATCAGAGTAGCGAGAGGGAAAGAGAAAAAGAGATTGGTATCACATGAAATAATATAAATACAAAGCATCTGAACTATTAATGTTGATCCAATTTATCTCAGTTTCTGTCAAAGATAAAAGTTGTCAACTAATAAATTGTTCATCATAATATCACAGACATTTTATCAATTGACACATTTTTGATACCTTAAATACACTGAGATGACTGAGATAATTGAGCTCAAAGTTGGTCACTTCTATTTTAGGTAATTTGAATCTGGTTTTTGTTATTTTACGGAACAATGTGTAATACACTTGTATGGATTCATTTTCAATTACAGTTTTTATGTCTGGTGCTATCAGGACC</canonical>
            <polymorphic>AGCTAAAAATGATAATTCTAAAAATCAAAGTGATTCTTAATTTTCAGCAATAGAGTAATCTGCCTGGAAAGTTTCAGAAAGCTCCGATCACTTAGAAGAAGGTTACAACGAGTTTTTTATGCACAAAGACTTTTCCCCACACTGTCAGTTTTGAGCTCAATCATCTCGGCTCTTATAAGAGATATCGAAAATGTTTCAGATGACAAAATATTGATGATTTTATGATCAACAATTTATCAGTTGACAACTTTTTCATATCTTTAGCAGGAACCGTGATAACTTGGCACTAAGTTTAAAGTGAAGTGACCCTTCTATTACAGGTCTTTCGGTAATTTTGTGAAACTTACATTGAGTTATATTTCTCTCCTGGCGCGCCATTTCCCTCTGCTCAATCAAGGTTCTCACAGCGGCGTCCATTTCTCAAAGCTCGATCTCCAATTCTAAAGTGATAAGGAATTAAATCTAGTGACCTTATTTCACATACCTTGGATTCGACCAGSTTGGTCCATAGCTTGACTGAAATTAAGCGTGAGCAATAGCAAATCGATAGAAACACCAGAAAAAAAATGATGATGACAATATAAAGTGAGGGCCAGGGAACGAGAAACCGTTTGTTTGCTTTGGTTCATGTAAATTTTTTGTTTTTTCTCACATATCAGAGTAGCGAGAGGGAAAGAGAAAAAGAGATTGGTATCACATGAAATAATATAAATACAAAGCATCTGAACTATTAATGTTGATCCAATTTATCTCAGTTTCTGTCAAAGATAAAAGTTGTCAACTAATAAATTGTTCATCATAATATCACAGACATTTTATCAATTGACACATTTTTGATACCTTAAATACACTGAGATGACTGAGATAATTGAGCTCAAAGTTGGTCACTTCTATTTTAGGTAATTTGAATCTGGTTTTTGTTATTTTACGGAACAATGTGTAATACACTTGTATGGATTCATTTTCAATTACAGTTTTTATGTCTGGTGCTATCAGGACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>362 271 127 79 74 73 12 2</canonical_bands>
                <polymorphic_bands>362 271 127 85 79 74 2</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>281 257 127 81 79 74 73 14 12 2</canonical_bands>
                <polymorphic_bands>281 257 127 85 81 79 74 14 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATCTCCAATTCTAAAGTGATA</pcr_primer_p1>
		<pcr_primer_p2>TCTTTCCCTCTCGCTACTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGATCTCCAATTCTAAAGTGATAAGGAATTAAATCTAGTGACCTTATTTCACATACCTTGGATTCGACCAGCTTGGTCCATAGCTTGACTGAAATTAAGCGTGAGCAATAGCAAATCGATAGAAACACCAGAAAAAAAATGATGATGACAATATAAAGTGAGGGCCAGGGAACGAGAAACCGTTTGTTTGCTTTGGTTCATGTAAATTTTTTGTTTTTTCTCACATATCAGAGTAGCGAGAGGGAAAGA</canonical_amplicon>
		<polymorphic_amplicon>CGATCTCCAATTCTAAAGTGATAAGGAATTAAATCTAGTGACCTTATTTCACATACCTTGGATTCGACCAGSTTGGTCCATAGCTTGACTGAAATTAAGCGTGAGCAATAGCAAATCGATAGAAACACCAGAAAAAAAATGATGATGACAATATAAAGTGAGGGCCAGGGAACGAGAAACCGTTTGTTTGCTTTGGTTCATGTAAATTTTTTGTTTTTTCTCACATATCAGAGTAGCGAGAGGGAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12569</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>237547</contig_pos>
        <strand>+</strand>
        <context>AAAGAGAAAA[A/G]GAGATTGGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTTTTGTTTTTTCTCACATATCAGAGTAGCGAGAGGGAAAGAGAAAA</left_flank>
        <right_flank>GAGATTGGTATCACATGAAATAATATAAATACAAAGCATCTGAACTATTA</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGAAAATGTTTCAGATGACAAAATATTGATGATTTTATGATCAACAATTTATCAGTTGACAACTTTTTCATATCTTTAGCAGGAACCGTGATAACTTGGCACTAAGTTTAAAGTGAAGTGACCCTTCTATTACAGGTCTTTCGGTAATTTTGTGAAACTTACATTGAGTTATATTTCTCTCCTGGCGCGCCATTTCCCTCTGCTCAATCAAGGTTCTCACAGCGGCGTCCATTTCTCAAAGCTCGATCTCCAATTCTAAAGTGATAAGGAATTAAATCTAGTGACCTTATTTCACATACCTTGGATTCGACCAGCTTGGTCCATAGCTTGACTGAAATTAAGCGTGAGCAATAGCAAATCGATAGAAACACCAGAAAAAAAATGATGATGACAATATAAAGTGAGGGCCAGGGAACGAGAAACCGTTTGTTTGCTTTGGTTCATGTAAATTTTTTGTTTTTTCTCACATATCAGAGTAGCGAGAGGGAAAGAGAAAAAGAGATTGGTATCACATGAAATAATATAAATACAAAGCATCTGAACTATTAATGTTGATCCAATTTATCTCAGTTTCTGTCAAAGATAAAAGTTGTCAACTAATAAATTGTTCATCATAATATCACAGACATTTTATCAATTGACACATTTTTGATACCTTAAATACACTGAGATGACTGAGATAATTGAGCTCAAAGTTGGTCACTTCTATTTTAGGTAATTTGAATCTGGTTTTTGTTATTTTACGGAACAATGTGTAATACACTTGTATGGATTCATTTTCAATTACAGTTTTTATGTCTGGTGCTATCAGGACCACAAAATCATAAACAGATTATCGATGACATTATAATTAGCACATGCTCCAATTCTTCATTTTCCAGTTGCTCCACCACTTGCTCCTTCTCCCGTTTGATTCCCAGCTTCAAATTGTTTTATGAGTGCACCAATTATCTCGTTGTTGGTTTTACAAACCTCTGAAAAGTCAGAATATCGTATTT</canonical>
            <polymorphic>ATCGAAAATGTTTCAGATGACAAAATATTGATGATTTTATGATCAACAATTTATCAGTTGACAACTTTTTCATATCTTTAGCAGGAACCGTGATAACTTGGCACTAAGTTTAAAGTGAAGTGACCCTTCTATTACAGGTCTTTCGGTAATTTTGTGAAACTTACATTGAGTTATATTTCTCTCCTGGCGCGCCATTTCCCTCTGCTCAATCAAGGTTCTCACAGCGGCGTCCATTTCTCAAAGCTCGATCTCCAATTCTAAAGTGATAAGGAATTAAATCTAGTGACCTTATTTCACATACCTTGGATTCGACCAGCTTGGTCCATAGCTTGACTGAAATTAAGCGTGAGCAATAGCAAATCGATAGAAACACCAGAAAAAAAATGATGATGACAATATAAAGTGAGGGCCAGGGAACGAGAAACCGTTTGTTTGCTTTGGTTCATGTAAATTTTTTGTTTTTTCTCACATATCAGAGTAGCGAGAGGGAAAGAGAAAARGAGATTGGTATCACATGAAATAATATAAATACAAAGCATCTGAACTATTAATGTTGATCCAATTTATCTCAGTTTCTGTCAAAGATAAAAGTTGTCAACTAATAAATTGTTCATCATAATATCACAGACATTTTATCAATTGACACATTTTTGATACCTTAAATACACTGAGATGACTGAGATAATTGAGCTCAAAGTTGGTCACTTCTATTTTAGGTAATTTGAATCTGGTTTTTGTTATTTTACGGAACAATGTGTAATACACTTGTATGGATTCATTTTCAATTACAGTTTTTATGTCTGGTGCTATCAGGACCACAAAATCATAAACAGATTATCGATGACATTATAATTAGCACATGCTCCAATTCTTCATTTTCCAGTTGCTCCACCACTTGCTCCTTCTCCCGTTTGATTCCCAGCTTCAAATTGTTTTATGAGTGCACCAATTATCTCGTTGTTGGTTTTACAAACCTCTGAAAAGTCAGAATATCGTATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTGCTTTGGTTCATGTAAA</pcr_primer_p1>
		<pcr_primer_p2>CGTAAAATAACAAAAACCAGATT</pcr_primer_p2>
		<pcr_amplicon_size>317</pcr_amplicon_size>
		<canonical_amplicon>GTTTGCTTTGGTTCATGTAAATTTTTTGTTTTTTCTCACATATCAGAGTAGCGAGAGGGAAAGAGAAAAAGAGATTGGTATCACATGAAATAATATAAATACAAAGCATCTGAACTATTAATGTTGATCCAATTTATCTCAGTTTCTGTCAAAGATAAAAGTTGTCAACTAATAAATTGTTCATCATAATATCACAGACATTTTATCAATTGACACATTTTTGATACCTTAAATACACTGAGATGACTGAGATAATTGAGCTCAAAGTTGGTCACTTCTATTTTAGGTAATTTGAATCTGGTTTTTGTTATTTTACG</canonical_amplicon>
		<polymorphic_amplicon>GTTTGCTTTGGTTCATGTAAATTTTTTGTTTTTTCTCACATATCAGAGTAGCGAGAGGGAAAGAGAAAARGAGATTGGTATCACATGAAATAATATAAATACAAAGCATCTGAACTATTAATGTTGATCCAATTTATCTCAGTTTCTGTCAAAGATAAAAGTTGTCAACTAATAAATTGTTCATCATAATATCACAGACATTTTATCAATTGACACATTTTTGATACCTTAAATACACTGAGATGACTGAGATAATTGAGCTCAAAGTTGGTCACTTCTATTTTAGGTAATTTGAATCTGGTTTTTGTTATTTTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12570</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>241061</contig_pos>
        <strand>+</strand>
        <context>TTTTTCTTTC[A/G]CTTCTAACTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGCCTGCATTTTCTGATGCAGGTCTTCCAGAGCTGTCGTTTTTTCTTTC</left_flank>
        <right_flank>CTTCTAACTCTGAAAAAACATAATTATGAATTTCAATGATATTATTGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGTACATTAAAAAAAATCATTTTTCACATTAATTAACAACATCGACTTCTCCTTCCTCCTCTTCGTATTCTGCTTCTACATATTCCTCATCTTGAACCTCTCGTTTTTTCTCCCGATCATACTGATACACATCTCCATAATCATATCGCATCGATGGGTCATATGGTACCTCCTCCTCCTCTTCGTCTTGTGCTCCGTCAACTTGCTCATCTTCCATATACTGACCCTGCTCATTATCTTCCTTTTCTTCTTCTTCCTCATCTTCATACCCTTCACCTTCCTCCCCATCCTCATATTGTTCCTCCTCTTCCATCGCCTCTTCCACCACCACATCCTCCAAAAGTTGTGCGTTTTCTATTCGCAGAGCATTATTCTCTACTGGAAATGCACTTTTTTTCGAATAAAACTGTCTCAAACATACTCAAAACCTTGGCCAACTCCAACGACATGGCCTGCATTTTCTGATGCAGGTCTTCCAGAGCTGTCGTTTTTTCTTTCGCTTCTAACTCTGAAAAAACATAATTATGAATTTCAATGATATTATTGAAACTCACTCAATCGATCGTTCTCTGTTTGCCAGGTACTTGCGAATTTCAGATATTCCTTTGTGACTCTTTCGAGCTCTTTTTTGAGATAGTCATCTGAAAAAGCAACATTTTAAATCGTGATTAAACCCGCCATCATCTTTTAGCCCAATTATCTAAGTTCTTGTGAAAGATATCAAAATTTCGTTAACTAAAAAAATATAGCTGATAACATGATCGCCAATTTATCAATTGACAAATTTTTAATGTCTTTTACAGTAATCGAGTTAATTATCTCAAAGTGGTCGGTTTGAATGCGCTTCTATTAGAAAAATTACGGTATTTTGAATTTGACCCACTTTCGATGGCTTCTGGAGACTTGACCATGTTGGACGACACCTTGAAAGACGAAGGGAAAATTCTGAGAAATCTTAATCAGGGATACGGTAAAGAGGAAGGAGAAGCTGCATAAAAA</canonical>
            <polymorphic>GCGTACATTAAAAAAAATCATTTTTCACATTAATTAACAACATCGACTTCTCCTTCCTCCTCTTCGTATTCTGCTTCTACATATTCCTCATCTTGAACCTCTCGTTTTTTCTCCCGATCATACTGATACACATCTCCATAATCATATCGCATCGATGGGTCATATGGTACCTCCTCCTCCTCTTCGTCTTGTGCTCCGTCAACTTGCTCATCTTCCATATACTGACCCTGCTCATTATCTTCCTTTTCTTCTTCTTCCTCATCTTCATACCCTTCACCTTCCTCCCCATCCTCATATTGTTCCTCCTCTTCCATCGCCTCTTCCACCACCACATCCTCCAAAAGTTGTGCGTTTTCTATTCGCAGAGCATTATTCTCTACTGGAAATGCACTTTTTTTCGAATAAAACTGTCTCAAACATACTCAAAACCTTGGCCAACTCCAACGACATGGCCTGCATTTTCTGATGCAGGTCTTCCAGAGCTGTCGTTTTTTCTTTCRCTTCTAACTCTGAAAAAACATAATTATGAATTTCAATGATATTATTGAAACTCACTCAATCGATCGTTCTCTGTTTGCCAGGTACTTGCGAATTTCAGATATTCCTTTGTGACTCTTTCGAGCTCTTTTTTGAGATAGTCATCTGAAAAAGCAACATTTTAAATCGTGATTAAACCCGCCATCATCTTTTAGCCCAATTATCTAAGTTCTTGTGAAAGATATCAAAATTTCGTTAACTAAAAAAATATAGCTGATAACATGATCGCCAATTTATCAATTGACAAATTTTTAATGTCTTTTACAGTAATCGAGTTAATTATCTCAAAGTGGTCGGTTTGAATGCGCTTCTATTAGAAAAATTACGGTATTTTGAATTTGACCCACTTTCGATGGCTTCTGGAGACTTGACCATGTTGGACGACACCTTGAAAGACGAAGGGAAAATTCTGAGAAATCTTAATCAGGGATACGGTAAAGAGGAAGGAGAAGCTGCATAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCTCAAACATACTCAAAACCT</pcr_primer_p1>
		<pcr_primer_p2>AATGTTGCTTTTTCAGATGACTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTCTCAAACATACTCAAAACCTTGGCCAACTCCAACGACATGGCCTGCATTTTCTGATGCAGGTCTTCCAGAGCTGTCGTTTTTTCTTTCGCTTCTAACTCTGAAAAAACATAATTATGAATTTCAATGATATTATTGAAACTCACTCAATCGATCGTTCTCTGTTTGCCAGGTACTTGCGAATTTCAGATATTCCTTTGTGACTCTTTCGAGCTCTTTTTTGAGATAGTCATCTGAAAAAGCAACATT</canonical_amplicon>
		<polymorphic_amplicon>TGTCTCAAACATACTCAAAACCTTGGCCAACTCCAACGACATGGCCTGCATTTTCTGATGCAGGTCTTCCAGAGCTGTCGTTTTTTCTTTCRCTTCTAACTCTGAAAAAACATAATTATGAATTTCAATGATATTATTGAAACTCACTCAATCGATCGTTCTCTGTTTGCCAGGTACTTGCGAATTTCAGATATTCCTTTGTGACTCTTTCGAGCTCTTTTTTGAGATAGTCATCTGAAAAAGCAACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12571</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>256590</contig_pos>
        <strand>+</strand>
        <context>GAAAGTTCGA[A/G]AATCCAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTTGCTCATCGGTCATTGCTCCTTCGGTAGAATATCTGGAAAGTTCGA</left_flank>
        <right_flank>AATCCAAAAAAAATGGAGAAGATGTTGCAAGAAAAGGAATGGAATTGGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCAGATCGGGTGCTTTTCTATAACAGGTTTTACTGAAGATTTTTGAACATTTTGCACTATGGAAGTCAAAACTCACCCTCCAAAACTTTCAATACTTCCTCAAACTTCTCAAACTGCTCCTTCTGTTTCTTATCATTTCTTTCCAATGACTCCACCCTTTTTTCCATTTCTGCCGCATACAGGATGGCACTGTCCACCTTCTCTAAAATTTTTTTCAAATAAAATATTTGAAACAATAAATAAATTTCTCACCATTTCGTTTTCTTCGAACTTCGTTCATATTTCCCTCATGCTTCTTTTCCCATTCTTCAACCGCGCTCTCAACAGTTTTCACGTTTCCAAAACGTTTTAATAATCCGGTTGCGAGTCGAAGTTTTCGTTGAAGGAGAGTAACTGAAAAATTAGATTTGAAAATAATTTTCTCTTGATAATTCAACTCACTCCGCCTGTTTTGCTCATCGGTCATTGCTCCTTCGGTAGAATATCTGGAAAGTTCGAAAATCCAAAAAAAATGGAGAAGATGTTGCAAGAAAAGGAATGGAATTGGCTTTTAACCAATAATTAGAGACAATAAAAAAAGGAACAACACACATTAAGAAGGTCGTAATTTATTATGGAACCACCAGCTTGCAAAAATCGTCAGTAACAAAAAATGAATGTACATAAAAGATCATACGAAAAATCCAAGATTAATCGTCAGTTTTCTTCCTGTTGCCTTATTTTCCTTCTCGTTTCGCAAACCTTATTTCATCTTTCATTCGAGCAATTTTTTGGTTTCAGATTGGCGTTCTCGGCTCAAAATTAGAGTGATTTGTGCATATTTCAAATCTAAACTGTTGTAAGGGTCTGCAAGACCCTTATTACTCGATGCCCCATATAGTCAGTTCTACTGTTTCTAGTCTGATTCCTTAGAGCCATGACATGTCTTTCTTTCTGGCCTTTGCCCCCCCAAGAGTCATGAAATACCATTCTCTCAGGTGACATATTGGCTCTAGGAGA</canonical>
            <polymorphic>AGCAGATCGGGTGCTTTTCTATAACAGGTTTTACTGAAGATTTTTGAACATTTTGCACTATGGAAGTCAAAACTCACCCTCCAAAACTTTCAATACTTCCTCAAACTTCTCAAACTGCTCCTTCTGTTTCTTATCATTTCTTTCCAATGACTCCACCCTTTTTTCCATTTCTGCCGCATACAGGATGGCACTGTCCACCTTCTCTAAAATTTTTTTCAAATAAAATATTTGAAACAATAAATAAATTTCTCACCATTTCGTTTTCTTCGAACTTCGTTCATATTTCCCTCATGCTTCTTTTCCCATTCTTCAACCGCGCTCTCAACAGTTTTCACGTTTCCAAAACGTTTTAATAATCCGGTTGCGAGTCGAAGTTTTCGTTGAAGGAGAGTAACTGAAAAATTAGATTTGAAAATAATTTTCTCTTGATAATTCAACTCACTCCGCCTGTTTTGCTCATCGGTCATTGCTCCTTCGGTAGAATATCTGGAAAGTTCGARAATCCAAAAAAAATGGAGAAGATGTTGCAAGAAAAGGAATGGAATTGGCTTTTAACCAATAATTAGAGACAATAAAAAAAGGAACAACACACATTAAGAAGGTCGTAATTTATTATGGAACCACCAGCTTGCAAAAATCGTCAGTAACAAAAAATGAATGTACATAAAAGATCATACGAAAAATCCAAGATTAATCGTCAGTTTTCTTCCTGTTGCCTTATTTTCCTTCTCGTTTCGCAAACCTTATTTCATCTTTCATTCGAGCAATTTTTTGGTTTCAGATTGGCGTTCTCGGCTCAAAATTAGAGTGATTTGTGCATATTTCAAATCTAAACTGTTGTAAGGGTCTGCAAGACCCTTATTACTCGATGCCCCATATAGTCAGTTCTACTGTTTCTAGTCTGATTCCTTAGAGCCATGACATGTCTTTCTTTCTGGCCTTTGCCCCCCCAAGAGTCATGAAATACCATTCTCTCAGGTGACATATTGGCTCTAGGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>504 267 229</canonical_bands>
                <polymorphic_bands>733 267</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTTTCGTTGAAGGAGAGTAAC</pcr_primer_p1>
		<pcr_primer_p2>GGTTCCATAATAAATTACGACCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTTTTCGTTGAAGGAGAGTAACTGAAAAATTAGATTTGAAAATAATTTTCTCTTGATAATTCAACTCACTCCGCCTGTTTTGCTCATCGGTCATTGCTCCTTCGGTAGAATATCTGGAAAGTTCGAAAATCCAAAAAAAATGGAGAAGATGTTGCAAGAAAAGGAATGGAATTGGCTTTTAACCAATAATTAGAGACAATAAAAAAAGGAACAACACACATTAAGAAGGTCGTAATTTATTATGGAACC</canonical_amplicon>
		<polymorphic_amplicon>AGTTTTCGTTGAAGGAGAGTAACTGAAAAATTAGATTTGAAAATAATTTTCTCTTGATAATTCAACTCACTCCGCCTGTTTTGCTCATCGGTCATTGCTCCTTCGGTAGAATATCTGGAAAGTTCGARAATCCAAAAAAAATGGAGAAGATGTTGCAAGAAAAGGAATGGAATTGGCTTTTAACCAATAATTAGAGACAATAAAAAAAGGAACAACACACATTAAGAAGGTCGTAATTTATTATGGAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12572</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>256753</contig_pos>
        <strand>+</strand>
        <context>AATGAATGTA[C/T]ATAAAAGATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATGGAACCACCAGCTTGCAAAAATCGTCAGTAACAAAAAATGAATGTA</left_flank>
        <right_flank>ATAAAAGATCATACGAAAAATCCAAGATTAATCGTCAGTTTTCTTCCTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCATTTCTGCCGCATACAGGATGGCACTGTCCACCTTCTCTAAAATTTTTTTCAAATAAAATATTTGAAACAATAAATAAATTTCTCACCATTTCGTTTTCTTCGAACTTCGTTCATATTTCCCTCATGCTTCTTTTCCCATTCTTCAACCGCGCTCTCAACAGTTTTCACGTTTCCAAAACGTTTTAATAATCCGGTTGCGAGTCGAAGTTTTCGTTGAAGGAGAGTAACTGAAAAATTAGATTTGAAAATAATTTTCTCTTGATAATTCAACTCACTCCGCCTGTTTTGCTCATCGGTCATTGCTCCTTCGGTAGAATATCTGGAAAGTTCGAAAATCCAAAAAAAATGGAGAAGATGTTGCAAGAAAAGGAATGGAATTGGCTTTTAACCAATAATTAGAGACAATAAAAAAAGGAACAACACACATTAAGAAGGTCGTAATTTATTATGGAACCACCAGCTTGCAAAAATCGTCAGTAACAAAAAATGAATGTACATAAAAGATCATACGAAAAATCCAAGATTAATCGTCAGTTTTCTTCCTGTTGCCTTATTTTCCTTCTCGTTTCGCAAACCTTATTTCATCTTTCATTCGAGCAATTTTTTGGTTTCAGATTGGCGTTCTCGGCTCAAAATTAGAGTGATTTGTGCATATTTCAAATCTAAACTGTTGTAAGGGTCTGCAAGACCCTTATTACTCGATGCCCCATATAGTCAGTTCTACTGTTTCTAGTCTGATTCCTTAGAGCCATGACATGTCTTTCTTTCTGGCCTTTGCCCCCCCAAGAGTCATGAAATACCATTCTCTCAGGTGACATATTGGCTCTAGGAGATCAAGATAGAGATTCTAAACCTCCAGTCTCTCTACAGCCTCTAAATCCTGAATCATTCCAGATTCCAATGACGAGTCCATCGCCCCCACGGCTACAGAAGCTCCAGGCAGCGGTCTCCAAGTTATCCACCGTCTGTTATTAAATTCCTCATATCCCCATCATT</canonical>
            <polymorphic>TCCATTTCTGCCGCATACAGGATGGCACTGTCCACCTTCTCTAAAATTTTTTTCAAATAAAATATTTGAAACAATAAATAAATTTCTCACCATTTCGTTTTCTTCGAACTTCGTTCATATTTCCCTCATGCTTCTTTTCCCATTCTTCAACCGCGCTCTCAACAGTTTTCACGTTTCCAAAACGTTTTAATAATCCGGTTGCGAGTCGAAGTTTTCGTTGAAGGAGAGTAACTGAAAAATTAGATTTGAAAATAATTTTCTCTTGATAATTCAACTCACTCCGCCTGTTTTGCTCATCGGTCATTGCTCCTTCGGTAGAATATCTGGAAAGTTCGAAAATCCAAAAAAAATGGAGAAGATGTTGCAAGAAAAGGAATGGAATTGGCTTTTAACCAATAATTAGAGACAATAAAAAAAGGAACAACACACATTAAGAAGGTCGTAATTTATTATGGAACCACCAGCTTGCAAAAATCGTCAGTAACAAAAAATGAATGTAYATAAAAGATCATACGAAAAATCCAAGATTAATCGTCAGTTTTCTTCCTGTTGCCTTATTTTCCTTCTCGTTTCGCAAACCTTATTTCATCTTTCATTCGAGCAATTTTTTGGTTTCAGATTGGCGTTCTCGGCTCAAAATTAGAGTGATTTGTGCATATTTCAAATCTAAACTGTTGTAAGGGTCTGCAAGACCCTTATTACTCGATGCCCCATATAGTCAGTTCTACTGTTTCTAGTCTGATTCCTTAGAGCCATGACATGTCTTTCTTTCTGGCCTTTGCCCCCCCAAGAGTCATGAAATACCATTCTCTCAGGTGACATATTGGCTCTAGGAGATCAAGATAGAGATTCTAAACCTCCAGTCTCTCTACAGCCTCTAAATCCTGAATCATTCCAGATTCCAATGACGAGTCCATCGCCCCCACGGCTACAGAAGCTCCAGGCAGCGGTCTCCAAGTTATCCACCGTCTGTTATTAAATTCCTCATATCCCCATCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGTACA</site>
                <isoschizomers>
                    <enzyme>AauI</enzyme>
                    <enzyme>Bsp1407I</enzyme>
                    <enzyme>BsrGI</enzyme>
                    <enzyme>SspBI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGGAACAACACACATTAAGA</pcr_primer_p1>
		<pcr_primer_p2>TGAAATATGCACAAATCACTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAGGAACAACACACATTAAGAAGGTCGTAATTTATTATGGAACCACCAGCTTGCAAAAATCGTCAGTAACAAAAAATGAATGTACATAAAAGATCATACGAAAAATCCAAGATTAATCGTCAGTTTTCTTCCTGTTGCCTTATTTTCCTTCTCGTTTCGCAAACCTTATTTCATCTTTCATTCGAGCAATTTTTTGGTTTCAGATTGGCGTTCTCGGCTCAAAATTAGAGTGATTTGTGCATATTTCA</canonical_amplicon>
		<polymorphic_amplicon>AAAAGGAACAACACACATTAAGAAGGTCGTAATTTATTATGGAACCACCAGCTTGCAAAAATCGTCAGTAACAAAAAATGAATGTAYATAAAAGATCATACGAAAAATCCAAGATTAATCGTCAGTTTTCTTCCTGTTGCCTTATTTTCCTTCTCGTTTCGCAAACCTTATTTCATCTTTCATTCGAGCAATTTTTTGGTTTCAGATTGGCGTTCTCGGCTCAAAATTAGAGTGATTTGTGCATATTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12573</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>256843</contig_pos>
        <strand>+</strand>
        <context>CTTATTTCAT[C/T]TTTCATTCGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCTTCCTGTTGCCTTATTTTCCTTCTCGTTTCGCAAACCTTATTTCAT</left_flank>
        <right_flank>TTTCATTCGAGCAATTTTTTGGTTTCAGATTGGCGTTCTCGGCTCAAAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTCGTTTTCTTCGAACTTCGTTCATATTTCCCTCATGCTTCTTTTCCCATTCTTCAACCGCGCTCTCAACAGTTTTCACGTTTCCAAAACGTTTTAATAATCCGGTTGCGAGTCGAAGTTTTCGTTGAAGGAGAGTAACTGAAAAATTAGATTTGAAAATAATTTTCTCTTGATAATTCAACTCACTCCGCCTGTTTTGCTCATCGGTCATTGCTCCTTCGGTAGAATATCTGGAAAGTTCGAAAATCCAAAAAAAATGGAGAAGATGTTGCAAGAAAAGGAATGGAATTGGCTTTTAACCAATAATTAGAGACAATAAAAAAAGGAACAACACACATTAAGAAGGTCGTAATTTATTATGGAACCACCAGCTTGCAAAAATCGTCAGTAACAAAAAATGAATGTACATAAAAGATCATACGAAAAATCCAAGATTAATCGTCAGTTTTCTTCCTGTTGCCTTATTTTCCTTCTCGTTTCGCAAACCTTATTTCATCTTTCATTCGAGCAATTTTTTGGTTTCAGATTGGCGTTCTCGGCTCAAAATTAGAGTGATTTGTGCATATTTCAAATCTAAACTGTTGTAAGGGTCTGCAAGACCCTTATTACTCGATGCCCCATATAGTCAGTTCTACTGTTTCTAGTCTGATTCCTTAGAGCCATGACATGTCTTTCTTTCTGGCCTTTGCCCCCCCAAGAGTCATGAAATACCATTCTCTCAGGTGACATATTGGCTCTAGGAGATCAAGATAGAGATTCTAAACCTCCAGTCTCTCTACAGCCTCTAAATCCTGAATCATTCCAGATTCCAATGACGAGTCCATCGCCCCCACGGCTACAGAAGCTCCAGGCAGCGGTCTCCAAGTTATCCACCGTCTGTTATTAAATTCCTCATATCCCCATCATTTTATTTGTCATCATTTATTAACCCCGCCCCAAATTCCATTTATTCCCCGTTTGTATATAAGCCCATTCATGTAACCCTAAAGTCACGATT</canonical>
            <polymorphic>CATTTCGTTTTCTTCGAACTTCGTTCATATTTCCCTCATGCTTCTTTTCCCATTCTTCAACCGCGCTCTCAACAGTTTTCACGTTTCCAAAACGTTTTAATAATCCGGTTGCGAGTCGAAGTTTTCGTTGAAGGAGAGTAACTGAAAAATTAGATTTGAAAATAATTTTCTCTTGATAATTCAACTCACTCCGCCTGTTTTGCTCATCGGTCATTGCTCCTTCGGTAGAATATCTGGAAAGTTCGAAAATCCAAAAAAAATGGAGAAGATGTTGCAAGAAAAGGAATGGAATTGGCTTTTAACCAATAATTAGAGACAATAAAAAAAGGAACAACACACATTAAGAAGGTCGTAATTTATTATGGAACCACCAGCTTGCAAAAATCGTCAGTAACAAAAAATGAATGTACATAAAAGATCATACGAAAAATCCAAGATTAATCGTCAGTTTTCTTCCTGTTGCCTTATTTTCCTTCTCGTTTCGCAAACCTTATTTCATYTTTCATTCGAGCAATTTTTTGGTTTCAGATTGGCGTTCTCGGCTCAAAATTAGAGTGATTTGTGCATATTTCAAATCTAAACTGTTGTAAGGGTCTGCAAGACCCTTATTACTCGATGCCCCATATAGTCAGTTCTACTGTTTCTAGTCTGATTCCTTAGAGCCATGACATGTCTTTCTTTCTGGCCTTTGCCCCCCCAAGAGTCATGAAATACCATTCTCTCAGGTGACATATTGGCTCTAGGAGATCAAGATAGAGATTCTAAACCTCCAGTCTCTCTACAGCCTCTAAATCCTGAATCATTCCAGATTCCAATGACGAGTCCATCGCCCCCACGGCTACAGAAGCTCCAGGCAGCGGTCTCCAAGTTATCCACCGTCTGTTATTAAATTCCTCATATCCCCATCATTTTATTTGTCATCATTTATTAACCCCGCCCCAAATTCCATTTATTCCCCGTTTGTATATAAGCCCATTCATGTAACCCTAAAGTCACGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGGAACAACACACATTAAGA</pcr_primer_p1>
		<pcr_primer_p2>TGAAATATGCACAAATCACTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAGGAACAACACACATTAAGAAGGTCGTAATTTATTATGGAACCACCAGCTTGCAAAAATCGTCAGTAACAAAAAATGAATGTACATAAAAGATCATACGAAAAATCCAAGATTAATCGTCAGTTTTCTTCCTGTTGCCTTATTTTCCTTCTCGTTTCGCAAACCTTATTTCATCTTTCATTCGAGCAATTTTTTGGTTTCAGATTGGCGTTCTCGGCTCAAAATTAGAGTGATTTGTGCATATTTCA</canonical_amplicon>
		<polymorphic_amplicon>AAAAGGAACAACACACATTAAGAAGGTCGTAATTTATTATGGAACCACCAGCTTGCAAAAATCGTCAGTAACAAAAAATGAATGTACATAAAAGATCATACGAAAAATCCAAGATTAATCGTCAGTTTTCTTCCTGTTGCCTTATTTTCCTTCTCGTTTCGCAAACCTTATTTCATYTTTCATTCGAGCAATTTTTTGGTTTCAGATTGGCGTTCTCGGCTCAAAATTAGAGTGATTTGTGCATATTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12574</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>256856</contig_pos>
        <strand>+</strand>
        <context>TCATTCGAGC[A/G]ATTTTTTGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTTATTTTCCTTCTCGTTTCGCAAACCTTATTTCATCTTTCATTCGAGC</left_flank>
        <right_flank>ATTTTTTGGTTTCAGATTGGCGTTCTCGGCTCAAAATTAGAGTGATTTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAACTTCGTTCATATTTCCCTCATGCTTCTTTTCCCATTCTTCAACCGCGCTCTCAACAGTTTTCACGTTTCCAAAACGTTTTAATAATCCGGTTGCGAGTCGAAGTTTTCGTTGAAGGAGAGTAACTGAAAAATTAGATTTGAAAATAATTTTCTCTTGATAATTCAACTCACTCCGCCTGTTTTGCTCATCGGTCATTGCTCCTTCGGTAGAATATCTGGAAAGTTCGAAAATCCAAAAAAAATGGAGAAGATGTTGCAAGAAAAGGAATGGAATTGGCTTTTAACCAATAATTAGAGACAATAAAAAAAGGAACAACACACATTAAGAAGGTCGTAATTTATTATGGAACCACCAGCTTGCAAAAATCGTCAGTAACAAAAAATGAATGTACATAAAAGATCATACGAAAAATCCAAGATTAATCGTCAGTTTTCTTCCTGTTGCCTTATTTTCCTTCTCGTTTCGCAAACCTTATTTCATCTTTCATTCGAGCAATTTTTTGGTTTCAGATTGGCGTTCTCGGCTCAAAATTAGAGTGATTTGTGCATATTTCAAATCTAAACTGTTGTAAGGGTCTGCAAGACCCTTATTACTCGATGCCCCATATAGTCAGTTCTACTGTTTCTAGTCTGATTCCTTAGAGCCATGACATGTCTTTCTTTCTGGCCTTTGCCCCCCCAAGAGTCATGAAATACCATTCTCTCAGGTGACATATTGGCTCTAGGAGATCAAGATAGAGATTCTAAACCTCCAGTCTCTCTACAGCCTCTAAATCCTGAATCATTCCAGATTCCAATGACGAGTCCATCGCCCCCACGGCTACAGAAGCTCCAGGCAGCGGTCTCCAAGTTATCCACCGTCTGTTATTAAATTCCTCATATCCCCATCATTTTATTTGTCATCATTTATTAACCCCGCCCCAAATTCCATTTATTCCCCGTTTGTATATAAGCCCATTCATGTAACCCTAAAGTCACGATTACACCTTATTCTT</canonical>
            <polymorphic>TCGAACTTCGTTCATATTTCCCTCATGCTTCTTTTCCCATTCTTCAACCGCGCTCTCAACAGTTTTCACGTTTCCAAAACGTTTTAATAATCCGGTTGCGAGTCGAAGTTTTCGTTGAAGGAGAGTAACTGAAAAATTAGATTTGAAAATAATTTTCTCTTGATAATTCAACTCACTCCGCCTGTTTTGCTCATCGGTCATTGCTCCTTCGGTAGAATATCTGGAAAGTTCGAAAATCCAAAAAAAATGGAGAAGATGTTGCAAGAAAAGGAATGGAATTGGCTTTTAACCAATAATTAGAGACAATAAAAAAAGGAACAACACACATTAAGAAGGTCGTAATTTATTATGGAACCACCAGCTTGCAAAAATCGTCAGTAACAAAAAATGAATGTACATAAAAGATCATACGAAAAATCCAAGATTAATCGTCAGTTTTCTTCCTGTTGCCTTATTTTCCTTCTCGTTTCGCAAACCTTATTTCATCTTTCATTCGAGCRATTTTTTGGTTTCAGATTGGCGTTCTCGGCTCAAAATTAGAGTGATTTGTGCATATTTCAAATCTAAACTGTTGTAAGGGTCTGCAAGACCCTTATTACTCGATGCCCCATATAGTCAGTTCTACTGTTTCTAGTCTGATTCCTTAGAGCCATGACATGTCTTTCTTTCTGGCCTTTGCCCCCCCAAGAGTCATGAAATACCATTCTCTCAGGTGACATATTGGCTCTAGGAGATCAAGATAGAGATTCTAAACCTCCAGTCTCTCTACAGCCTCTAAATCCTGAATCATTCCAGATTCCAATGACGAGTCCATCGCCCCCACGGCTACAGAAGCTCCAGGCAGCGGTCTCCAAGTTATCCACCGTCTGTTATTAAATTCCTCATATCCCCATCATTTTATTTGTCATCATTTATTAACCCCGCCCCAAATTCCATTTATTCCCCGTTTGTATATAAGCCCATTCATGTAACCCTAAAGTCACGATTACACCTTATTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>341 159 134 112 72 53 46 35 18 16 14</canonical_bands>
                <polymorphic_bands>341 194 134 112 72 53 46 18 16 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGGAACAACACACATTAAGA</pcr_primer_p1>
		<pcr_primer_p2>TGAAATATGCACAAATCACTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAGGAACAACACACATTAAGAAGGTCGTAATTTATTATGGAACCACCAGCTTGCAAAAATCGTCAGTAACAAAAAATGAATGTACATAAAAGATCATACGAAAAATCCAAGATTAATCGTCAGTTTTCTTCCTGTTGCCTTATTTTCCTTCTCGTTTCGCAAACCTTATTTCATCTTTCATTCGAGCAATTTTTTGGTTTCAGATTGGCGTTCTCGGCTCAAAATTAGAGTGATTTGTGCATATTTCA</canonical_amplicon>
		<polymorphic_amplicon>AAAAGGAACAACACACATTAAGAAGGTCGTAATTTATTATGGAACCACCAGCTTGCAAAAATCGTCAGTAACAAAAAATGAATGTACATAAAAGATCATACGAAAAATCCAAGATTAATCGTCAGTTTTCTTCCTGTTGCCTTATTTTCCTTCTCGTTTCGCAAACCTTATTTCATCTTTCATTCGAGCRATTTTTTGGTTTCAGATTGGCGTTCTCGGCTCAAAATTAGAGTGATTTGTGCATATTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12575</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>259890</contig_pos>
        <strand>+</strand>
        <context>ACATCAATTG[C/G]CAACATCAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACAGAACAACATATACAAAAAAGATCATATGAAAAATCGAACATCAATTG</left_flank>
        <right_flank>CAACATCAATTCTCTTTCTGTTGATTTCCTCTGTTTCCCGTTTTGCAAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAACTTTTTCCAGAGTTTTGGCATGTCTCTCCGGATCTGAAATTGAAAAAAATCAGTGTTTTTACAGCTGGAAAATTCTTACGTCTCTCAATGTCGCTGTCAGTTTCACCTTTACGATAAACCATCTCCCTGGACATGTCCTTTTCCCAATCGAGTTCGCGCTGCAGTCCTCTGACTGAAATTCGAGCTTTTTAAATTTTCAAAGTATTAAAATCAACTCACTCTGTGCCTGTTCTCTTCGGAAATTGTTGTCCATGTCCATTTTTCTTGATGGTTAGCTGAAGAATAGGGTATCAATGACCCAAAAACTACAAGCTTAATAAGGTAATATAAATCGCAAAAAAATCAATTGATAGTGATTAAAAAATTAAACTAATAAAAAAGTGAATTTAGGTTTATTTAGACTTGGAATGCGGTTGTGAAATGACACAAACTTGAGAAAAAAACAACAGAACAACATATACAAAAAAGATCATATGAAAAATCGAACATCAATTGGCAACATCAATTCTCTTTCTGTTGATTTCCTCTGTTTCCCGTTTTGCAAATCTCAATTCATCTTTCTTACGAGCAATTGCTCGTTCCAGGTTGACGTTCTCAGCTGAAAATGGGAGAAAATTTGTGCTACGAGGTCGGAAGTATCGGTTATATGAAAATAATTCAATATTTGGAATTCAAGAAGTAATTTTCAGGTCCAATGAATCAACTTGAGATCTGTGGGAAACCCCGAGAGCCCCTCGAACCGTCAACTTTAAGTCCATATATCTGATTTCCTGCGAAAGATAACAAAAATATGTTAACTGATAAAATTTTGGTGATATTATGATAAATATTTTATCTGTTGACAGATTTTTTATATCTTTTATAGGAACTAAGATAATTGAGCTCAAAATTAAGAGAACGGCAGCCGAACGCGAAGCTCAGCTGGCAAGCGCCGACGTGTTCACTTTGAGTCCGTGTATCTCATTTCCTGCAAAAGATATCAAAAAGTTGTTAACT</canonical>
            <polymorphic>CGAACTTTTTCCAGAGTTTTGGCATGTCTCTCCGGATCTGAAATTGAAAAAAATCAGTGTTTTTACAGCTGGAAAATTCTTACGTCTCTCAATGTCGCTGTCAGTTTCACCTTTACGATAAACCATCTCCCTGGACATGTCCTTTTCCCAATCGAGTTCGCGCTGCAGTCCTCTGACTGAAATTCGAGCTTTTTAAATTTTCAAAGTATTAAAATCAACTCACTCTGTGCCTGTTCTCTTCGGAAATTGTTGTCCATGTCCATTTTTCTTGATGGTTAGCTGAAGAATAGGGTATCAATGACCCAAAAACTACAAGCTTAATAAGGTAATATAAATCGCAAAAAAATCAATTGATAGTGATTAAAAAATTAAACTAATAAAAAAGTGAATTTAGGTTTATTTAGACTTGGAATGCGGTTGTGAAATGACACAAACTTGAGAAAAAAACAACAGAACAACATATACAAAAAAGATCATATGAAAAATCGAACATCAATTGSCAACATCAATTCTCTTTCTGTTGATTTCCTCTGTTTCCCGTTTTGCAAATCTCAATTCATCTTTCTTACGAGCAATTGCTCGTTCCAGGTTGACGTTCTCAGCTGAAAATGGGAGAAAATTTGTGCTACGAGGTCGGAAGTATCGGTTATATGAAAATAATTCAATATTTGGAATTCAAGAAGTAATTTTCAGGTCCAATGAATCAACTTGAGATCTGTGGGAAACCCCGAGAGCCCCTCGAACCGTCAACTTTAAGTCCATATATCTGATTTCCTGCGAAAGATAACAAAAATATGTTAACTGATAAAATTTTGGTGATATTATGATAAATATTTTATCTGTTGACAGATTTTTTATATCTTTTATAGGAACTAAGATAATTGAGCTCAAAATTAAGAGAACGGCAGCCGAACGCGAAGCTCAGCTGGCAAGCGCCGACGTGTTCACTTTGAGTCCGTGTATCTCATTTCCTGCAAAAGATATCAAAAAGTTGTTAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAAGGTAATATAAATCGCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TCGTAAGAAAGATGAATTGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AATAAGGTAATATAAATCGCAAAAAAATCAATTGATAGTGATTAAAAAATTAAACTAATAAAAAAGTGAATTTAGGTTTATTTAGACTTGGAATGCGGTTGTGAAATGACACAAACTTGAGAAAAAAACAACAGAACAACATATACAAAAAAGATCATATGAAAAATCGAACATCAATTGGCAACATCAATTCTCTTTCTGTTGATTTCCTCTGTTTCCCGTTTTGCAAATCTCAATTCATCTTTCTTACGA</canonical_amplicon>
		<polymorphic_amplicon>AATAAGGTAATATAAATCGCAAAAAAATCAATTGATAGTGATTAAAAAATTAAACTAATAAAAAAGTGAATTTAGGTTTATTTAGACTTGGAATGCGGTTGTGAAATGACACAAACTTGAGAAAAAAACAACAGAACAACATATACAAAAAAGATCATATGAAAAATCGAACATCAATTGSCAACATCAATTCTCTTTCTGTTGATTTCCTCTGTTTCCCGTTTTGCAAATCTCAATTCATCTTTCTTACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12576</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>261372</contig_pos>
        <strand>+</strand>
        <context>TAGGAAAGAG[A/G]GGCAGTACTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAG</left_flank>
        <right_flank>GGCAGTACTATTGGGCAAGCTATGGACATTATTCCGGTAAAACTAGAATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTTGCCAAAGAAAATCGTGCTGCAGGGCTTCGACTGGAATTCGAAGTTGTTTTGAATTTTCGAAAATAATTCAAAATCGACTTACCACGCTCCCGATGTTCAATATTGTCCATTTTGTTGTTGGAAAACTGAAAAATAGAGGCATCAAATACCCGGGACATCAATCTAATCTTTAAATATAAGGTAATAGAAACCGCAAGAAAAGCGATGGATTGTGATTTTCAAAAAATGAAATTCGTTCAAAAAAAAAGAAAAAAATTAGATTTATTATGACTAGGAATGCGGTTGTGAAATGACACAGACTAGTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGTTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAGGGGCAGTACTATTGGGCAAGCTATGGACATTATTCCGGTAAAACTAGAATGTTCGAAAAACAAGTCGGTCAGGGTCAGGGCAAATCGCCTAGGCTATGTCCCTATTCTTGAGCTTCAATCTCAATTATCTCGTTTGCTGCAAAAGATACCAAAATTTCGTCCATTATTAAAATGTTTATCATAATGTCACCAGCCTTTTATCAGTTGACAAAAATTTGAAATCTTTCGCAAAGACCGATATAATGGAGTTCAAAGATAAGTACCATAAAGTGATTGAAGTACCACTTTCAACTTTGAGCGAATTTTTCTCGACTCCTTCAAAAGCTATCAAAAATTTGTCAACTAGTAAATTGTTTATCATGATGTCAGCAATATTTTACCAGTGGACAGATTCTTGATATCTCTCATAGGGACCGAGATAATGAAGCTCAAACAAACTCACCCTCTGTTTTTCTCAATTGCTCATTGATCTGCTGGAGTTGCACGTCTTGTTTTTCCTTG</canonical>
            <polymorphic>ATCTTGCCAAAGAAAATCGTGCTGCAGGGCTTCGACTGGAATTCGAAGTTGTTTTGAATTTTCGAAAATAATTCAAAATCGACTTACCACGCTCCCGATGTTCAATATTGTCCATTTTGTTGTTGGAAAACTGAAAAATAGAGGCATCAAATACCCGGGACATCAATCTAATCTTTAAATATAAGGTAATAGAAACCGCAAGAAAAGCGATGGATTGTGATTTTCAAAAAATGAAATTCGTTCAAAAAAAAAGAAAAAAATTAGATTTATTATGACTAGGAATGCGGTTGTGAAATGACACAGACTAGTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGTTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAGRGGCAGTACTATTGGGCAAGCTATGGACATTATTCCGGTAAAACTAGAATGTTCGAAAAACAAGTCGGTCAGGGTCAGGGCAAATCGCCTAGGCTATGTCCCTATTCTTGAGCTTCAATCTCAATTATCTCGTTTGCTGCAAAAGATACCAAAATTTCGTCCATTATTAAAATGTTTATCATAATGTCACCAGCCTTTTATCAGTTGACAAAAATTTGAAATCTTTCGCAAAGACCGATATAATGGAGTTCAAAGATAAGTACCATAAAGTGATTGAAGTACCACTTTCAACTTTGAGCGAATTTTTCTCGACTCCTTCAAAAGCTATCAAAAATTTGTCAACTAGTAAATTGTTTATCATGATGTCAGCAATATTTTACCAGTGGACAGATTCTTGATATCTCTCATAGGGACCGAGATAATGAAGCTCAAACAAACTCACCCTCTGTTTTTCTCAATTGCTCATTGATCTGCTGGAGTTGCACGTCTTGTTTTTCCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAAAGGAATTGTGAAATGTGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCGAACATTCTAGTTTTACC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGTTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAGGGGCAGTACTATTGGGCAAGCTATGGACATTATTCCGGTAAAACTAGAATGTTCGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGTTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAGRGGCAGTACTATTGGGCAAGCTATGGACATTATTCCGGTAAAACTAGAATGTTCGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12577</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>261342</contig_pos>
        <strand></strand>
        <context>ATTTGGTAGA[C/A]AAATTGGGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TGAAGTTCTAGATTCTCCTCTGAAAAAAAGTTTTTTTTTGATTTGGTAGA</left_flank>
        <right_flank>AAATTGGGAGCCCATATTTTAGGAAAGAGGGGCAGTACTATTGGGCAAGC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTACGATATTCCATTTCCCTGAACATGGCATCTTGCCAAAGAAAATCGTGCTGCAGGGCTTCGACTGGAATTCGAAGTTGTTTTGAATTTTCGAAAATAATTCAAAATCGACTTACCACGCTCCCGATGTTCAATATTGTCCATTTTGTTGTTGGAAAACTGAAAAATAGAGGCATCAAATACCCGGGACATCAATCTAATCTTTAAATATAAGGTAATAGAAACCGCAAGAAAAGCGATGGATTGTGATTTTCAAAAAATGAAATTCGTTCAAAAAAAAAGAAAAAAATTAGATTTATTATGACTAGGAATGCGGTTGTGAAATGACACAGACTAGTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGTTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAGGGGCAGTACTATTGGGCAAGCTATGGACATTATTCCGGTAAAACTAGAATGTTCGAAAAACAAGTCGGTCAGGGTCAGGGCAAATCGCCTAGGCTATGTCCCTATTCTTGAGCTTCAATCTCAATTATCTCGTTTGCTGCAAAAGATACCAAAATTTCGTCCATTATTAAAATGTTTATCATAATGTCACCAGCCTTTTATCAGTTGACAAAAATTTGAAATCTTTCGCAAAGACCGATATAATGGAGTTCAAAGATAAGTACCATAAAGTGATTGAAGTACCACTTTCAACTTTGAGCGAATTTTTCTCGACTCCTTCAAAAGCTATCAAAAATTTGTCAACTAGTAAATTGTTTATCATGATGTCAGCAATATTTTACCAGTGGACAGATTCTTGATATCTCTCATAGGGACCGAGATAATGAAGCTCAAACAAACTCACCCTCTGTTTTTCTCAATTGCTCATTGATC</canonical>
            <polymorphic>TTTACGATATTCCATTTCCCTGAACATGGCATCTTGCCAAAGAAAATCGTGCTGCAGGGCTTCGACTGGAATTCGAAGTTGTTTTGAATTTTCGAAAATAATTCAAAATCGACTTACCACGCTCCCGATGTTCAATATTGTCCATTTTGTTGTTGGAAAACTGAAAAATAGAGGCATCAAATACCCGGGACATCAATCTAATCTTTAAATATAAGGTAATAGAAACCGCAAGAAAAGCGATGGATTGTGATTTTCAAAAAATGAAATTCGTTCAAAAAAAAAGAAAAAAATTAGATTTATTATGACTAGGAATGCGGTTGTGAAATGACACAGACTAGTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGTTTTTTTTTGATTTGGTAGAMAAATTGGGAGCCCATATTTTAGGAAAGAGGGGCAGTACTATTGGGCAAGCTATGGACATTATTCCGGTAAAACTAGAATGTTCGAAAAACAAGTCGGTCAGGGTCAGGGCAAATCGCCTAGGCTATGTCCCTATTCTTGAGCTTCAATCTCAATTATCTCGTTTGCTGCAAAAGATACCAAAATTTCGTCCATTATTAAAATGTTTATCATAATGTCACCAGCCTTTTATCAGTTGACAAAAATTTGAAATCTTTCGCAAAGACCGATATAATGGAGTTCAAAGATAAGTACCATAAAGTGATTGAAGTACCACTTTCAACTTTGAGCGAATTTTTCTCGACTCCTTCAAAAGCTATCAAAAATTTGTCAACTAGTAAATTGTTTATCATGATGTCAGCAATATTTTACCAGTGGACAGATTCTTGATATCTCTCATAGGGACCGAGATAATGAAGCTCAAACAAACTCACCCTCTGTTTTTCTCAATTGCTCATTGATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>497 238 134 86 45</canonical_bands>
                <polymorphic_bands>735 134 86 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAAAGGAATTGTGAAATGTGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCGAACATTCTAGTTTTACC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGTTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAGGGGCAGTACTATTGGGCAAGCTATGGACATTATTCCGGTAAAACTAGAATGTTCGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGTTTTTTTTTGATTTGGTAGAMAAATTGGGAGCCCATATTTTAGGAAAGAGGGGCAGTACTATTGGGCAAGCTATGGACATTATTCCGGTAAAACTAGAATGTTCGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12578</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>261321</contig_pos>
        <strand>+</strand>
        <context>CTGAAAAAAA[A/G]MTTTTTTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAA</left_flank>
        <right_flank>TTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTCGCTATTGGTTTTTTCTTTACGATATTCCATTTCCCTGAACATGGCATCTTGCCAAAGAAAATCGTGCTGCAGGGCTTCGACTGGAATTCGAAGTTGTTTTGAATTTTCGAAAATAATTCAAAATCGACTTACCACGCTCCCGATGTTCAATATTGTCCATTTTGTTGTTGGAAAACTGAAAAATAGAGGCATCAAATACCCGGGACATCAATCTAATCTTTAAATATAAGGTAATAGAAACCGCAAGAAAAGCGATGGATTGTGATTTTCAAAAAATGAAATTCGTTCAAAAAAAAAGAAAAAAATTAGATTTATTATGACTAGGAATGCGGTTGTGAAATGACACAGACTAGTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGTTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAGGGGCAGTACTATTGGGCAAGCTATGGACATTATTCCGGTAAAACTAGAATGTTCGAAAAACAAGTCGGTCAGGGTCAGGGCAAATCGCCTAGGCTATGTCCCTATTCTTGAGCTTCAATCTCAATTATCTCGTTTGCTGCAAAAGATACCAAAATTTCGTCCATTATTAAAATGTTTATCATAATGTCACCAGCCTTTTATCAGTTGACAAAAATTTGAAATCTTTCGCAAAGACCGATATAATGGAGTTCAAAGATAAGTACCATAAAGTGATTGAAGTACCACTTTCAACTTTGAGCGAATTTTTCTCGACTCCTTCAAAAGCTATCAAAAATTTGTCAACTAGTAAATTGTTTATCATGATGTCAGCAATATTTTACCAGTGGACAGATTCTTGATATCTCTCATAGGGACCGAGATAATGAAGCTCAAACAAACTCACCCTCTGTT</canonical>
            <polymorphic>AATTTCGCTATTGGTTTTTTCTTTACGATATTCCATTTCCCTGAACATGGCATCTTGCCAAAGAAAATCGTGCTGCAGGGCTTCGACTGGAATTCGAAGTTGTTTTGAATTTTCGAAAATAATTCAAAATCGACTTACCACGCTCCCGATGTTCAATATTGTCCATTTTGTTGTTGGAAAACTGAAAAATAGAGGCATCAAATACCCGGGACATCAATCTAATCTTTAAATATAAGGTAATAGAAACCGCAAGAAAAGCGATGGATTGTGATTTTCAAAAAATGAAATTCGTTCAAAAAAAAAGAAAAAAATTAGATTTATTATGACTAGGAATGCGGTTGTGAAATGACACAGACTAGTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAARTTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAGGGGCAGTACTATTGGGCAAGCTATGGACATTATTCCGGTAAAACTAGAATGTTCGAAAAACAAGTCGGTCAGGGTCAGGGCAAATCGCCTAGGCTATGTCCCTATTCTTGAGCTTCAATCTCAATTATCTCGTTTGCTGCAAAAGATACCAAAATTTCGTCCATTATTAAAATGTTTATCATAATGTCACCAGCCTTTTATCAGTTGACAAAAATTTGAAATCTTTCGCAAAGACCGATATAATGGAGTTCAAAGATAAGTACCATAAAGTGATTGAAGTACCACTTTCAACTTTGAGCGAATTTTTCTCGACTCCTTCAAAAGCTATCAAAAATTTGTCAACTAGTAAATTGTTTATCATGATGTCAGCAATATTTTACCAGTGGACAGATTCTTGATATCTCTCATAGGGACCGAGATAATGAAGCTCAAACAAACTCACCCTCTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAAAGGAATTGTGAAATGTGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCGAACATTCTAGTTTTACC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGTTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAGGGGCAGTACTATTGGGCAAGCTATGGACATTATTCCGGTAAAACTAGAATGTTCGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAARTTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAGGGGCAGTACTATTGGGCAAGCTATGGACATTATTCCGGTAAAACTAGAATGTTCGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12579</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>261281</contig_pos>
        <strand>+</strand>
        <context>CTCAATGCCA[C/T]CAGTTTCTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCA</left_flank>
        <right_flank>CAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGTTTTTTTTTG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTTCAGCTCTAAATTAAAAAAAAACACACGTTTCTCAATTTCGCTATTGGTTTTTTCTTTACGATATTCCATTTCCCTGAACATGGCATCTTGCCAAAGAAAATCGTGCTGCAGGGCTTCGACTGGAATTCGAAGTTGTTTTGAATTTTCGAAAATAATTCAAAATCGACTTACCACGCTCCCGATGTTCAATATTGTCCATTTTGTTGTTGGAAAACTGAAAAATAGAGGCATCAAATACCCGGGACATCAATCTAATCTTTAAATATAAGGTAATAGAAACCGCAAGAAAAGCGATGGATTGTGATTTTCAAAAAATGAAATTCGTTCAAAAAAAAAGAAAAAAATTAGATTTATTATGACTAGGAATGCGGTTGTGAAATGACACAGACTAGTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGTTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAGGGGCAGTACTATTGGGCAAGCTATGGACATTATTCCGGTAAAACTAGAATGTTCGAAAAACAAGTCGGTCAGGGTCAGGGCAAATCGCCTAGGCTATGTCCCTATTCTTGAGCTTCAATCTCAATTATCTCGTTTGCTGCAAAAGATACCAAAATTTCGTCCATTATTAAAATGTTTATCATAATGTCACCAGCCTTTTATCAGTTGACAAAAATTTGAAATCTTTCGCAAAGACCGATATAATGGAGTTCAAAGATAAGTACCATAAAGTGATTGAAGTACCACTTTCAACTTTGAGCGAATTTTTCTCGACTCCTTCAAAAGCTATCAAAAATTTGTCAACTAGTAAATTGTTTATCATGATGTCAGCAATATTTTACCAGTGGACAGATTCTTGATATCTCTCATAG</canonical>
            <polymorphic>TTTTTTTCAGCTCTAAATTAAAAAAAAACACACGTTTCTCAATTTCGCTATTGGTTTTTTCTTTACGATATTCCATTTCCCTGAACATGGCATCTTGCCAAAGAAAATCGTGCTGCAGGGCTTCGACTGGAATTCGAAGTTGTTTTGAATTTTCGAAAATAATTCAAAATCGACTTACCACGCTCCCGATGTTCAATATTGTCCATTTTGTTGTTGGAAAACTGAAAAATAGAGGCATCAAATACCCGGGACATCAATCTAATCTTTAAATATAAGGTAATAGAAACCGCAAGAAAAGCGATGGATTGTGATTTTCAAAAAATGAAATTCGTTCAAAAAAAAAGAAAAAAATTAGATTTATTATGACTAGGAATGCGGTTGTGAAATGACACAGACTAGTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCAYCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGTTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAGGGGCAGTACTATTGGGCAAGCTATGGACATTATTCCGGTAAAACTAGAATGTTCGAAAAACAAGTCGGTCAGGGTCAGGGCAAATCGCCTAGGCTATGTCCCTATTCTTGAGCTTCAATCTCAATTATCTCGTTTGCTGCAAAAGATACCAAAATTTCGTCCATTATTAAAATGTTTATCATAATGTCACCAGCCTTTTATCAGTTGACAAAAATTTGAAATCTTTCGCAAAGACCGATATAATGGAGTTCAAAGATAAGTACCATAAAGTGATTGAAGTACCACTTTCAACTTTGAGCGAATTTTTCTCGACTCCTTCAAAAGCTATCAAAAATTTGTCAACTAGTAAATTGTTTATCATGATGTCAGCAATATTTTACCAGTGGACAGATTCTTGATATCTCTCATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>280 130 101 83 80 80 73 68 30 25 21 12 8 7 2</canonical_bands>
                <polymorphic_bands>360 130 101 83 80 73 68 30 25 21 12 8 7 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAAAGGAATTGTGAAATGTGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCGAACATTCTAGTTTTACC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGTTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAGGGGCAGTACTATTGGGCAAGCTATGGACATTATTCCGGTAAAACTAGAATGTTCGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCAYCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGTTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAGGGGCAGTACTATTGGGCAAGCTATGGACATTATTCCGGTAAAACTAGAATGTTCGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12580</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>261253</contig_pos>
        <strand>+</strand>
        <context>CTGTCGTCTA[C/G]CCTCAACCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTA</left_flank>
        <right_flank>CCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATGCCTGAAAACAGAGCAAAAATACTTTTTTTTCAGCTCTAAATTAAAAAAAAACACACGTTTCTCAATTTCGCTATTGGTTTTTTCTTTACGATATTCCATTTCCCTGAACATGGCATCTTGCCAAAGAAAATCGTGCTGCAGGGCTTCGACTGGAATTCGAAGTTGTTTTGAATTTTCGAAAATAATTCAAAATCGACTTACCACGCTCCCGATGTTCAATATTGTCCATTTTGTTGTTGGAAAACTGAAAAATAGAGGCATCAAATACCCGGGACATCAATCTAATCTTTAAATATAAGGTAATAGAAACCGCAAGAAAAGCGATGGATTGTGATTTTCAAAAAATGAAATTCGTTCAAAAAAAAAGAAAAAAATTAGATTTATTATGACTAGGAATGCGGTTGTGAAATGACACAGACTAGTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGTTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAGGGGCAGTACTATTGGGCAAGCTATGGACATTATTCCGGTAAAACTAGAATGTTCGAAAAACAAGTCGGTCAGGGTCAGGGCAAATCGCCTAGGCTATGTCCCTATTCTTGAGCTTCAATCTCAATTATCTCGTTTGCTGCAAAAGATACCAAAATTTCGTCCATTATTAAAATGTTTATCATAATGTCACCAGCCTTTTATCAGTTGACAAAAATTTGAAATCTTTCGCAAAGACCGATATAATGGAGTTCAAAGATAAGTACCATAAAGTGATTGAAGTACCACTTTCAACTTTGAGCGAATTTTTCTCGACTCCTTCAAAAGCTATCAAAAATTTGTCAACTAGTAAATTGTTTATCATGATGTCAGCAATATTTTACCA</canonical>
            <polymorphic>CTATGCCTGAAAACAGAGCAAAAATACTTTTTTTTCAGCTCTAAATTAAAAAAAAACACACGTTTCTCAATTTCGCTATTGGTTTTTTCTTTACGATATTCCATTTCCCTGAACATGGCATCTTGCCAAAGAAAATCGTGCTGCAGGGCTTCGACTGGAATTCGAAGTTGTTTTGAATTTTCGAAAATAATTCAAAATCGACTTACCACGCTCCCGATGTTCAATATTGTCCATTTTGTTGTTGGAAAACTGAAAAATAGAGGCATCAAATACCCGGGACATCAATCTAATCTTTAAATATAAGGTAATAGAAACCGCAAGAAAAGCGATGGATTGTGATTTTCAAAAAATGAAATTCGTTCAAAAAAAAAGAAAAAAATTAGATTTATTATGACTAGGAATGCGGTTGTGAAATGACACAGACTAGTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTASCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGTTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAGGGGCAGTACTATTGGGCAAGCTATGGACATTATTCCGGTAAAACTAGAATGTTCGAAAAACAAGTCGGTCAGGGTCAGGGCAAATCGCCTAGGCTATGTCCCTATTCTTGAGCTTCAATCTCAATTATCTCGTTTGCTGCAAAAGATACCAAAATTTCGTCCATTATTAAAATGTTTATCATAATGTCACCAGCCTTTTATCAGTTGACAAAAATTTGAAATCTTTCGCAAAGACCGATATAATGGAGTTCAAAGATAAGTACCATAAAGTGATTGAAGTACCACTTTCAACTTTGAGCGAATTTTTCTCGACTCCTTCAAAAGCTATCAAAAATTTGTCAACTAGTAAATTGTTTATCATGATGTCAGCAATATTTTACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>395 254 116 73 49 45 39 29</canonical_bands>
                <polymorphic_bands>395 254 122 116 45 39 29</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>324 131 110 99 81 73 58 39 38 28 19</canonical_bands>
                <polymorphic_bands>324 131 127 110 81 73 58 39 38 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAAAGGAATTGTGAAATGTGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCGAACATTCTAGTTTTACC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGTTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAGGGGCAGTACTATTGGGCAAGCTATGGACATTATTCCGGTAAAACTAGAATGTTCGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTASCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGTTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAGGGGCAGTACTATTGGGCAAGCTATGGACATTATTCCGGTAAAACTAGAATGTTCGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12581</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>261211</contig_pos>
        <strand>+</strand>
        <context>AAATTTAAAA[A/G]AATAGTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTGAAATGACACAGACTAGTAAAGGAATTGTGAAATGTGAAATTTAAAA</left_flank>
        <right_flank>AATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCGCTCTATTCGAACCTTCTTCAATTCATTCTCATGCCACTCTATGCCTGAAAACAGAGCAAAAATACTTTTTTTTCAGCTCTAAATTAAAAAAAAACACACGTTTCTCAATTTCGCTATTGGTTTTTTCTTTACGATATTCCATTTCCCTGAACATGGCATCTTGCCAAAGAAAATCGTGCTGCAGGGCTTCGACTGGAATTCGAAGTTGTTTTGAATTTTCGAAAATAATTCAAAATCGACTTACCACGCTCCCGATGTTCAATATTGTCCATTTTGTTGTTGGAAAACTGAAAAATAGAGGCATCAAATACCCGGGACATCAATCTAATCTTTAAATATAAGGTAATAGAAACCGCAAGAAAAGCGATGGATTGTGATTTTCAAAAAATGAAATTCGTTCAAAAAAAAAGAAAAAAATTAGATTTATTATGACTAGGAATGCGGTTGTGAAATGACACAGACTAGTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGTTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAGGGGCAGTACTATTGGGCAAGCTATGGACATTATTCCGGTAAAACTAGAATGTTCGAAAAACAAGTCGGTCAGGGTCAGGGCAAATCGCCTAGGCTATGTCCCTATTCTTGAGCTTCAATCTCAATTATCTCGTTTGCTGCAAAAGATACCAAAATTTCGTCCATTATTAAAATGTTTATCATAATGTCACCAGCCTTTTATCAGTTGACAAAAATTTGAAATCTTTCGCAAAGACCGATATAATGGAGTTCAAAGATAAGTACCATAAAGTGATTGAAGTACCACTTTCAACTTTGAGCGAATTTTTCTCGACTCCTTCAAAAGCTATCAAAAATTTGTC</canonical>
            <polymorphic>CGCGCTCTATTCGAACCTTCTTCAATTCATTCTCATGCCACTCTATGCCTGAAAACAGAGCAAAAATACTTTTTTTTCAGCTCTAAATTAAAAAAAAACACACGTTTCTCAATTTCGCTATTGGTTTTTTCTTTACGATATTCCATTTCCCTGAACATGGCATCTTGCCAAAGAAAATCGTGCTGCAGGGCTTCGACTGGAATTCGAAGTTGTTTTGAATTTTCGAAAATAATTCAAAATCGACTTACCACGCTCCCGATGTTCAATATTGTCCATTTTGTTGTTGGAAAACTGAAAAATAGAGGCATCAAATACCCGGGACATCAATCTAATCTTTAAATATAAGGTAATAGAAACCGCAAGAAAAGCGATGGATTGTGATTTTCAAAAAATGAAATTCGTTCAAAAAAAAAGAAAAAAATTAGATTTATTATGACTAGGAATGCGGTTGTGAAATGACACAGACTAGTAAAGGAATTGTGAAATGTGAAATTTAAAARAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGTTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAGGGGCAGTACTATTGGGCAAGCTATGGACATTATTCCGGTAAAACTAGAATGTTCGAAAAACAAGTCGGTCAGGGTCAGGGCAAATCGCCTAGGCTATGTCCCTATTCTTGAGCTTCAATCTCAATTATCTCGTTTGCTGCAAAAGATACCAAAATTTCGTCCATTATTAAAATGTTTATCATAATGTCACCAGCCTTTTATCAGTTGACAAAAATTTGAAATCTTTCGCAAAGACCGATATAATGGAGTTCAAAGATAAGTACCATAAAGTGATTGAAGTACCACTTTCAACTTTGAGCGAATTTTTCTCGACTCCTTCAAAAGCTATCAAAAATTTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAATAGAAACCGCAAGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>GGAGAATCTAGAACTTCAACAGA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GTAATAGAAACCGCAAGAAAAGCGATGGATTGTGATTTTCAAAAAATGAAATTCGTTCAAAAAAAAAGAAAAAAATTAGATTTATTATGACTAGGAATGCGGTTGTGAAATGACACAGACTAGTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCC</canonical_amplicon>
		<polymorphic_amplicon>GTAATAGAAACCGCAAGAAAAGCGATGGATTGTGATTTTCAAAAAATGAAATTCGTTCAAAAAAAAAGAAAAAAATTAGATTTATTATGACTAGGAATGCGGTTGTGAAATGACACAGACTAGTAAAGGAATTGTGAAATGTGAAATTTAAAARAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12584</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>260871</contig_pos>
        <strand>+</strand>
        <context>CCTGAACATG[G/T]CATCTTGCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAATTTCGCTATTGGTTTTTTCTTTACGATATTCCATTTCCCTGAACATG</left_flank>
        <right_flank>CATCTTGCCAAAGAAAATCGTGCTGCAGGGCTTCGACTGGAATTCGAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCAAAAAGTTGTTAACTAACTGAATGTTAATTATTATATCACAAGTGTTTTGTCAGTCGATCACTTTTTGACAACTCTCATAGGAACCGAGATAATTGAGTTCAAAGTTAAAAGTTAGGTGGACCATTCTATCTTTTCTAGTGCTTCCAAACAAAAAATTACCAATAACGACGTCACCGTTCTTCTTGATCTTCTCAAATTCCGTCTTTTGCTTCTGCTGGACTCGCTCCATGATTTCCAGTCTCTGCTTCAGCTCGGCCGCATACCAGATGCCATAGTTGACTTTTTCTAGAAATTATTTTTAAATGAAACTATACTGAATTCATCAAACTAACCCTCGCGCTCTATTCGAACCTTCTTCAATTCATTCTCATGCCACTCTATGCCTGAAAACAGAGCAAAAATACTTTTTTTTCAGCTCTAAATTAAAAAAAAACACACGTTTCTCAATTTCGCTATTGGTTTTTTCTTTACGATATTCCATTTCCCTGAACATGGCATCTTGCCAAAGAAAATCGTGCTGCAGGGCTTCGACTGGAATTCGAAGTTGTTTTGAATTTTCGAAAATAATTCAAAATCGACTTACCACGCTCCCGATGTTCAATATTGTCCATTTTGTTGTTGGAAAACTGAAAAATAGAGGCATCAAATACCCGGGACATCAATCTAATCTTTAAATATAAGGTAATAGAAACCGCAAGAAAAGCGATGGATTGTGATTTTCAAAAAATGAAATTCGTTCAAAAAAAAAGAAAAAAATTAGATTTATTATGACTAGGAATGCGGTTGTGAAATGACACAGACTAGTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGTTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAG</canonical>
            <polymorphic>TATCAAAAAGTTGTTAACTAACTGAATGTTAATTATTATATCACAAGTGTTTTGTCAGTCGATCACTTTTTGACAACTCTCATAGGAACCGAGATAATTGAGTTCAAAGTTAAAAGTTAGGTGGACCATTCTATCTTTTCTAGTGCTTCCAAACAAAAAATTACCAATAACGACGTCACCGTTCTTCTTGATCTTCTCAAATTCCGTCTTTTGCTTCTGCTGGACTCGCTCCATGATTTCCAGTCTCTGCTTCAGCTCGGCCGCATACCAGATGCCATAGTTGACTTTTTCTAGAAATTATTTTTAAATGAAACTATACTGAATTCATCAAACTAACCCTCGCGCTCTATTCGAACCTTCTTCAATTCATTCTCATGCCACTCTATGCCTGAAAACAGAGCAAAAATACTTTTTTTTCAGCTCTAAATTAAAAAAAAACACACGTTTCTCAATTTCGCTATTGGTTTTTTCTTTACGATATTCCATTTCCCTGAACATGKCATCTTGCCAAAGAAAATCGTGCTGCAGGGCTTCGACTGGAATTCGAAGTTGTTTTGAATTTTCGAAAATAATTCAAAATCGACTTACCACGCTCCCGATGTTCAATATTGTCCATTTTGTTGTTGGAAAACTGAAAAATAGAGGCATCAAATACCCGGGACATCAATCTAATCTTTAAATATAAGGTAATAGAAACCGCAAGAAAAGCGATGGATTGTGATTTTCAAAAAATGAAATTCGTTCAAAAAAAAAGAAAAAAATTAGATTTATTATGACTAGGAATGCGGTTGTGAAATGACACAGACTAGTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGTTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTATTCGAACCTTCTTCAAT</pcr_primer_p1>
		<pcr_primer_p2>GGTAAGTCGATTTTGAATTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTCTATTCGAACCTTCTTCAATTCATTCTCATGCCACTCTATGCCTGAAAACAGAGCAAAAATACTTTTTTTTCAGCTCTAAATTAAAAAAAAACACACGTTTCTCAATTTCGCTATTGGTTTTTTCTTTACGATATTCCATTTCCCTGAACATGGCATCTTGCCAAAGAAAATCGTGCTGCAGGGCTTCGACTGGAATTCGAAGTTGTTTTGAATTTTCGAAAATAATTCAAAATCGACTTACC</canonical_amplicon>
		<polymorphic_amplicon>CTCTATTCGAACCTTCTTCAATTCATTCTCATGCCACTCTATGCCTGAAAACAGAGCAAAAATACTTTTTTTTCAGCTCTAAATTAAAAAAAAACACACGTTTCTCAATTTCGCTATTGGTTTTTTCTTTACGATATTCCATTTCCCTGAACATGKCATCTTGCCAAAGAAAATCGTGCTGCAGGGCTTCGACTGGAATTCGAAGTTGTTTTGAATTTTCGAAAATAATTCAAAATCGACTTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12585</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>313972</contig_pos>
        <strand>+</strand>
        <context>CACATATTTC[C/T]GTTGGATTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTCCCCAACCTTGACCGCGTTTTAACACATGCTAAAGTACACATATTTC</left_flank>
        <right_flank>GTTGGATTGCCATATCAACTTTTAATTAATGATCATCGTGATAAAAAGTA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGATAATGATAAGAAACTGATAATATCAAAATTGAAGTCGGTCAGACAATTCCCTGTTCACTACACTTTGAGGCGGGTCGAAGTTCACATGTTCATATTGAGGCTTAGCCTTAATCAGTTACTGTGAAACCTGTAATAGAAGAGCACTCAACTTTCAACTTTGGGCCAATTTTTCTCAGTTCCAGTGAAAGATATTAAAAAGCTGTCAACTGATAAATTTTTGAACATAATATGAAACTTTCTTTAGTTGAAAACTTTTTGATATCTTGCATAGGAATTGAGGTGATTGAGCTCAAACAAAAGACAGTGTGCGGGCCCTTCTATTACAGGTTTAAAATATTAAAATCTGTCAGAAAACGTGTGTCGTATATTTGGCCATACAAAAAAAGTGGAAAAGAGAAAAAGAGAGAGTGGGAGAGACACTCCCGTGTCGCATCAAAAGGAGTACTTCCCCAACCTTGACCGCGTTTTAACACATGCTAAAGTACACATATTTCTGTTGGATTGCCATATCAACTTTTAATTAATGATCATCGTGATAAAAAGTACATAATTTATTAAATAAAATCGACAAAAAAGTTTTACAAAATGCAATTTTCTTTTCCCAATTGAACACGGACACTTCCTGGGTTGTTTTCAATCCGGTGTTTCTTATTTTCTCCATGTTGCGATTTCCTCTTCCTTGAATTATTAAAAGGGCATCGATAGTTTATATTATGAAGTTTCATTCATTTTTGTCATTTGTCTCCATGAAGAACCGTCCTCAACTTCTGGACAAGCAAACTCCGTAAACACTCTGATAGAATGCCCCGAAATCGTCAAATTTAAGCTAATATATCTCACTTCCTATGCAAGATTTCAAAAAGTAGTCAATCAATAAAACATTGGTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATATCTTCTACATGAACCGAGATAAATTGACTCAAAGATGACTGTTCCCATCCTGAACGAAGCCTACCCT</canonical>
            <polymorphic>AGTGATAATGATAAGAAACTGATAATATCAAAATTGAAGTCGGTCAGACAATTCCCTGTTCACTACACTTTGAGGCGGGTCGAAGTTCACATGTTCATATTGAGGCTTAGCCTTAATCAGTTACTGTGAAACCTGTAATAGAAGAGCACTCAACTTTCAACTTTGGGCCAATTTTTCTCAGTTCCAGTGAAAGATATTAAAAAGCTGTCAACTGATAAATTTTTGAACATAATATGAAACTTTCTTTAGTTGAAAACTTTTTGATATCTTGCATAGGAATTGAGGTGATTGAGCTCAAACAAAAGACAGTGTGCGGGCCCTTCTATTACAGGTTTAAAATATTAAAATCTGTCAGAAAACGTGTGTCGTATATTTGGCCATACAAAAAAAGTGGAAAAGAGAAAAAGAGAGAGTGGGAGAGACACTCCCGTGTCGCATCAAAAGGAGTACTTCCCCAACCTTGACCGCGTTTTAACACATGCTAAAGTACACATATTTCYGTTGGATTGCCATATCAACTTTTAATTAATGATCATCGTGATAAAAAGTACATAATTTATTAAATAAAATCGACAAAAAAGTTTTACAAAATGCAATTTTCTTTTCCCAATTGAACACGGACACTTCCTGGGTTGTTTTCAATCCGGTGTTTCTTATTTTCTCCATGTTGCGATTTCCTCTTCCTTGAATTATTAAAAGGGCATCGATAGTTTATATTATGAAGTTTCATTCATTTTTGTCATTTGTCTCCATGAAGAACCGTCCTCAACTTCTGGACAAGCAAACTCCGTAAACACTCTGATAGAATGCCCCGAAATCGTCAAATTTAAGCTAATATATCTCACTTCCTATGCAAGATTTCAAAAAGTAGTCAATCAATAAAACATTGGTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATATCTTCTACATGAACCGAGATAAATTGACTCAAAGATGACTGTTCCCATCCTGAACGAAGCCTACCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAAAACGTGTGTCGTATATTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTGCATTTTGTAAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAGAAAACGTGTGTCGTATATTTGGCCATACAAAAAAAGTGGAAAAGAGAAAAAGAGAGAGTGGGAGAGACACTCCCGTGTCGCATCAAAAGGAGTACTTCCCCAACCTTGACCGCGTTTTAACACATGCTAAAGTACACATATTTCTGTTGGATTGCCATATCAACTTTTAATTAATGATCATCGTGATAAAAAGTACATAATTTATTAAATAAAATCGACAAAAAAGTTTTACAAAATGCAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>CAGAAAACGTGTGTCGTATATTTGGCCATACAAAAAAAGTGGAAAAGAGAAAAAGAGAGAGTGGGAGAGACACTCCCGTGTCGCATCAAAAGGAGTACTTCCCCAACCTTGACCGCGTTTTAACACATGCTAAAGTACACATATTTCYGTTGGATTGCCATATCAACTTTTAATTAATGATCATCGTGATAAAAAGTACATAATTTATTAAATAAAATCGACAAAAAAGTTTTACAAAATGCAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12586</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>314097</contig_pos>
        <strand>+</strand>
        <context>ACACGGACAC[G/T]TCCTGGGTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAAAGTTTTACAAAATGCAATTTTCTTTTCCCAATTGAACACGGACAC</left_flank>
        <right_flank>TCCTGGGTTGTTTTCAATCCGGTGTTTCTTATTTTCTCCATGTTGCGATT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGAAACCTGTAATAGAAGAGCACTCAACTTTCAACTTTGGGCCAATTTTTCTCAGTTCCAGTGAAAGATATTAAAAAGCTGTCAACTGATAAATTTTTGAACATAATATGAAACTTTCTTTAGTTGAAAACTTTTTGATATCTTGCATAGGAATTGAGGTGATTGAGCTCAAACAAAAGACAGTGTGCGGGCCCTTCTATTACAGGTTTAAAATATTAAAATCTGTCAGAAAACGTGTGTCGTATATTTGGCCATACAAAAAAAGTGGAAAAGAGAAAAAGAGAGAGTGGGAGAGACACTCCCGTGTCGCATCAAAAGGAGTACTTCCCCAACCTTGACCGCGTTTTAACACATGCTAAAGTACACATATTTCTGTTGGATTGCCATATCAACTTTTAATTAATGATCATCGTGATAAAAAGTACATAATTTATTAAATAAAATCGACAAAAAAGTTTTACAAAATGCAATTTTCTTTTCCCAATTGAACACGGACACTTCCTGGGTTGTTTTCAATCCGGTGTTTCTTATTTTCTCCATGTTGCGATTTCCTCTTCCTTGAATTATTAAAAGGGCATCGATAGTTTATATTATGAAGTTTCATTCATTTTTGTCATTTGTCTCCATGAAGAACCGTCCTCAACTTCTGGACAAGCAAACTCCGTAAACACTCTGATAGAATGCCCCGAAATCGTCAAATTTAAGCTAATATATCTCACTTCCTATGCAAGATTTCAAAAAGTAGTCAATCAATAAAACATTGGTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATATCTTCTACATGAACCGAGATAAATTGACTCAAAGATGACTGTTCCCATCCTGAACGAAGCCTACCCTATACGTGCACTTTGAACTCATTTATTTCGGTTTTGAGAGGCACTAAAAAGTAGTCAACTAATAAAATTATTATCATAATATCAGCAATATTTTATCAATTGACCACTTTTTGATATCTTTCACAG</canonical>
            <polymorphic>GTGAAACCTGTAATAGAAGAGCACTCAACTTTCAACTTTGGGCCAATTTTTCTCAGTTCCAGTGAAAGATATTAAAAAGCTGTCAACTGATAAATTTTTGAACATAATATGAAACTTTCTTTAGTTGAAAACTTTTTGATATCTTGCATAGGAATTGAGGTGATTGAGCTCAAACAAAAGACAGTGTGCGGGCCCTTCTATTACAGGTTTAAAATATTAAAATCTGTCAGAAAACGTGTGTCGTATATTTGGCCATACAAAAAAAGTGGAAAAGAGAAAAAGAGAGAGTGGGAGAGACACTCCCGTGTCGCATCAAAAGGAGTACTTCCCCAACCTTGACCGCGTTTTAACACATGCTAAAGTACACATATTTCTGTTGGATTGCCATATCAACTTTTAATTAATGATCATCGTGATAAAAAGTACATAATTTATTAAATAAAATCGACAAAAAAGTTTTACAAAATGCAATTTTCTTTTCCCAATTGAACACGGACACKTCCTGGGTTGTTTTCAATCCGGTGTTTCTTATTTTCTCCATGTTGCGATTTCCTCTTCCTTGAATTATTAAAAGGGCATCGATAGTTTATATTATGAAGTTTCATTCATTTTTGTCATTTGTCTCCATGAAGAACCGTCCTCAACTTCTGGACAAGCAAACTCCGTAAACACTCTGATAGAATGCCCCGAAATCGTCAAATTTAAGCTAATATATCTCACTTCCTATGCAAGATTTCAAAAAGTAGTCAATCAATAAAACATTGGTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATATCTTCTACATGAACCGAGATAAATTGACTCAAAGATGACTGTTCCCATCCTGAACGAAGCCTACCCTATACGTGCACTTTGAACTCATTTATTTCGGTTTTGAGAGGCACTAAAAAGTAGTCAACTAATAAAATTATTATCATAATATCAGCAATATTTTATCAATTGACCACTTTTTGATATCTTTCACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTAACACATGCTAAAGTACACA</pcr_primer_p1>
		<pcr_primer_p2>ATATAAACTATCGATGCCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTTAACACATGCTAAAGTACACATATTTCTGTTGGATTGCCATATCAACTTTTAATTAATGATCATCGTGATAAAAAGTACATAATTTATTAAATAAAATCGACAAAAAAGTTTTACAAAATGCAATTTTCTTTTCCCAATTGAACACGGACACTTCCTGGGTTGTTTTCAATCCGGTGTTTCTTATTTTCTCCATGTTGCGATTTCCTCTTCCTTGAATTATTAAAAGGGCATCGATAGTTTATAT</canonical_amplicon>
		<polymorphic_amplicon>TTTTAACACATGCTAAAGTACACATATTTCTGTTGGATTGCCATATCAACTTTTAATTAATGATCATCGTGATAAAAAGTACATAATTTATTAAATAAAATCGACAAAAAAGTTTTACAAAATGCAATTTTCTTTTCCCAATTGAACACGGACACKTCCTGGGTTGTTTTCAATCCGGTGTTTCTTATTTTCTCCATGTTGCGATTTCCTCTTCCTTGAATTATTAAAAGGGCATCGATAGTTTATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12587</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>314124</contig_pos>
        <strand>+</strand>
        <context>ATCCGGTGTT[C/T]CTTATKTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCCCAATTGAACACGGACACTTCCTGGGTTGTTTTCAATCCGGTGTT</left_flank>
        <right_flank>CTTATTTTCTCCATGTTGCGATTTCCTCTTCCTTGAATTATTAAAAGGGC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTCAACTTTGGGCCAATTTTTCTCAGTTCCAGTGAAAGATATTAAAAAGCTGTCAACTGATAAATTTTTGAACATAATATGAAACTTTCTTTAGTTGAAAACTTTTTGATATCTTGCATAGGAATTGAGGTGATTGAGCTCAAACAAAAGACAGTGTGCGGGCCCTTCTATTACAGGTTTAAAATATTAAAATCTGTCAGAAAACGTGTGTCGTATATTTGGCCATACAAAAAAAGTGGAAAAGAGAAAAAGAGAGAGTGGGAGAGACACTCCCGTGTCGCATCAAAAGGAGTACTTCCCCAACCTTGACCGCGTTTTAACACATGCTAAAGTACACATATTTCTGTTGGATTGCCATATCAACTTTTAATTAATGATCATCGTGATAAAAAGTACATAATTTATTAAATAAAATCGACAAAAAAGTTTTACAAAATGCAATTTTCTTTTCCCAATTGAACACGGACACTTCCTGGGTTGTTTTCAATCCGGTGTTTCTTATTTTCTCCATGTTGCGATTTCCTCTTCCTTGAATTATTAAAAGGGCATCGATAGTTTATATTATGAAGTTTCATTCATTTTTGTCATTTGTCTCCATGAAGAACCGTCCTCAACTTCTGGACAAGCAAACTCCGTAAACACTCTGATAGAATGCCCCGAAATCGTCAAATTTAAGCTAATATATCTCACTTCCTATGCAAGATTTCAAAAAGTAGTCAATCAATAAAACATTGGTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATATCTTCTACATGAACCGAGATAAATTGACTCAAAGATGACTGTTCCCATCCTGAACGAAGCCTACCCTATACGTGCACTTTGAACTCATTTATTTCGGTTTTGAGAGGCACTAAAAAGTAGTCAACTAATAAAATTATTATCATAATATCAGCAATATTTTATCAATTGACCACTTTTTGATATCTTTCACAGAAAATGAGATATACGGGCTCAACGTTG</canonical>
            <polymorphic>ACTTTCAACTTTGGGCCAATTTTTCTCAGTTCCAGTGAAAGATATTAAAAAGCTGTCAACTGATAAATTTTTGAACATAATATGAAACTTTCTTTAGTTGAAAACTTTTTGATATCTTGCATAGGAATTGAGGTGATTGAGCTCAAACAAAAGACAGTGTGCGGGCCCTTCTATTACAGGTTTAAAATATTAAAATCTGTCAGAAAACGTGTGTCGTATATTTGGCCATACAAAAAAAGTGGAAAAGAGAAAAAGAGAGAGTGGGAGAGACACTCCCGTGTCGCATCAAAAGGAGTACTTCCCCAACCTTGACCGCGTTTTAACACATGCTAAAGTACACATATTTCTGTTGGATTGCCATATCAACTTTTAATTAATGATCATCGTGATAAAAAGTACATAATTTATTAAATAAAATCGACAAAAAAGTTTTACAAAATGCAATTTTCTTTTCCCAATTGAACACGGACACTTCCTGGGTTGTTTTCAATCCGGTGTTYCTTATTTTCTCCATGTTGCGATTTCCTCTTCCTTGAATTATTAAAAGGGCATCGATAGTTTATATTATGAAGTTTCATTCATTTTTGTCATTTGTCTCCATGAAGAACCGTCCTCAACTTCTGGACAAGCAAACTCCGTAAACACTCTGATAGAATGCCCCGAAATCGTCAAATTTAAGCTAATATATCTCACTTCCTATGCAAGATTTCAAAAAGTAGTCAATCAATAAAACATTGGTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATATCTTCTACATGAACCGAGATAAATTGACTCAAAGATGACTGTTCCCATCCTGAACGAAGCCTACCCTATACGTGCACTTTGAACTCATTTATTTCGGTTTTGAGAGGCACTAAAAAGTAGTCAACTAATAAAATTATTATCATAATATCAGCAATATTTTATCAATTGACCACTTTTTGATATCTTTCACAGAAAATGAGATATACGGGCTCAACGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTAACACATGCTAAAGTACACA</pcr_primer_p1>
		<pcr_primer_p2>ATATAAACTATCGATGCCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTTAACACATGCTAAAGTACACATATTTCTGTTGGATTGCCATATCAACTTTTAATTAATGATCATCGTGATAAAAAGTACATAATTTATTAAATAAAATCGACAAAAAAGTTTTACAAAATGCAATTTTCTTTTCCCAATTGAACACGGACACTTCCTGGGTTGTTTTCAATCCGGTGTTTCTTATTTTCTCCATGTTGCGATTTCCTCTTCCTTGAATTATTAAAAGGGCATCGATAGTTTATAT</canonical_amplicon>
		<polymorphic_amplicon>TTTTAACACATGCTAAAGTACACATATTTCTGTTGGATTGCCATATCAACTTTTAATTAATGATCATCGTGATAAAAAGTACATAATTTATTAAATAAAATCGACAAAAAAGTTTTACAAAATGCAATTTTCTTTTCCCAATTGAACACGGACACTTCCTGGGTTGTTTTCAATCCGGTGTTYCTTATTTTCTCCATGTTGCGATTTCCTCTTCCTTGAATTATTAAAAGGGCATCGATAGTTTATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12588</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>314130</contig_pos>
        <strand>+</strand>
        <context>TGTTYCTTAT[G/T]TTCTCCATGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAATTGAACACGGACACTTCCTGGGTTGTTTTCAATCCGGTGTTTCTTAT</left_flank>
        <right_flank>TTCTCCATGTTGCGATTTCCTCTTCCTTGAATTATTAAAAGGGCATCGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTTTGGGCCAATTTTTCTCAGTTCCAGTGAAAGATATTAAAAAGCTGTCAACTGATAAATTTTTGAACATAATATGAAACTTTCTTTAGTTGAAAACTTTTTGATATCTTGCATAGGAATTGAGGTGATTGAGCTCAAACAAAAGACAGTGTGCGGGCCCTTCTATTACAGGTTTAAAATATTAAAATCTGTCAGAAAACGTGTGTCGTATATTTGGCCATACAAAAAAAGTGGAAAAGAGAAAAAGAGAGAGTGGGAGAGACACTCCCGTGTCGCATCAAAAGGAGTACTTCCCCAACCTTGACCGCGTTTTAACACATGCTAAAGTACACATATTTCTGTTGGATTGCCATATCAACTTTTAATTAATGATCATCGTGATAAAAAGTACATAATTTATTAAATAAAATCGACAAAAAAGTTTTACAAAATGCAATTTTCTTTTCCCAATTGAACACGGACACTTCCTGGGTTGTTTTCAATCCGGTGTTTCTTATTTTCTCCATGTTGCGATTTCCTCTTCCTTGAATTATTAAAAGGGCATCGATAGTTTATATTATGAAGTTTCATTCATTTTTGTCATTTGTCTCCATGAAGAACCGTCCTCAACTTCTGGACAAGCAAACTCCGTAAACACTCTGATAGAATGCCCCGAAATCGTCAAATTTAAGCTAATATATCTCACTTCCTATGCAAGATTTCAAAAAGTAGTCAATCAATAAAACATTGGTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATATCTTCTACATGAACCGAGATAAATTGACTCAAAGATGACTGTTCCCATCCTGAACGAAGCCTACCCTATACGTGCACTTTGAACTCATTTATTTCGGTTTTGAGAGGCACTAAAAAGTAGTCAACTAATAAAATTATTATCATAATATCAGCAATATTTTATCAATTGACCACTTTTTGATATCTTTCACAGAAAATGAGATATACGGGCTCAACGTTGACGGTA</canonical>
            <polymorphic>AACTTTGGGCCAATTTTTCTCAGTTCCAGTGAAAGATATTAAAAAGCTGTCAACTGATAAATTTTTGAACATAATATGAAACTTTCTTTAGTTGAAAACTTTTTGATATCTTGCATAGGAATTGAGGTGATTGAGCTCAAACAAAAGACAGTGTGCGGGCCCTTCTATTACAGGTTTAAAATATTAAAATCTGTCAGAAAACGTGTGTCGTATATTTGGCCATACAAAAAAAGTGGAAAAGAGAAAAAGAGAGAGTGGGAGAGACACTCCCGTGTCGCATCAAAAGGAGTACTTCCCCAACCTTGACCGCGTTTTAACACATGCTAAAGTACACATATTTCTGTTGGATTGCCATATCAACTTTTAATTAATGATCATCGTGATAAAAAGTACATAATTTATTAAATAAAATCGACAAAAAAGTTTTACAAAATGCAATTTTCTTTTCCCAATTGAACACGGACACTTCCTGGGTTGTTTTCAATCCGGTGTTTCTTATKTTCTCCATGTTGCGATTTCCTCTTCCTTGAATTATTAAAAGGGCATCGATAGTTTATATTATGAAGTTTCATTCATTTTTGTCATTTGTCTCCATGAAGAACCGTCCTCAACTTCTGGACAAGCAAACTCCGTAAACACTCTGATAGAATGCCCCGAAATCGTCAAATTTAAGCTAATATATCTCACTTCCTATGCAAGATTTCAAAAAGTAGTCAATCAATAAAACATTGGTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATATCTTCTACATGAACCGAGATAAATTGACTCAAAGATGACTGTTCCCATCCTGAACGAAGCCTACCCTATACGTGCACTTTGAACTCATTTATTTCGGTTTTGAGAGGCACTAAAAAGTAGTCAACTAATAAAATTATTATCATAATATCAGCAATATTTTATCAATTGACCACTTTTTGATATCTTTCACAGAAAATGAGATATACGGGCTCAACGTTGACGGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTAACACATGCTAAAGTACACA</pcr_primer_p1>
		<pcr_primer_p2>ATATAAACTATCGATGCCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTTAACACATGCTAAAGTACACATATTTCTGTTGGATTGCCATATCAACTTTTAATTAATGATCATCGTGATAAAAAGTACATAATTTATTAAATAAAATCGACAAAAAAGTTTTACAAAATGCAATTTTCTTTTCCCAATTGAACACGGACACTTCCTGGGTTGTTTTCAATCCGGTGTTTCTTATTTTCTCCATGTTGCGATTTCCTCTTCCTTGAATTATTAAAAGGGCATCGATAGTTTATAT</canonical_amplicon>
		<polymorphic_amplicon>TTTTAACACATGCTAAAGTACACATATTTCTGTTGGATTGCCATATCAACTTTTAATTAATGATCATCGTGATAAAAAGTACATAATTTATTAAATAAAATCGACAAAAAAGTTTTACAAAATGCAATTTTCTTTTCCCAATTGAACACGGACACTTCCTGGGTTGTTTTCAATCCGGTGTTTCTTATKTTCTCCATGTTGCGATTTCCTCTTCCTTGAATTATTAAAAGGGCATCGATAGTTTATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12589</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>314152</contig_pos>
        <strand>+</strand>
        <context>GCGATTTCCT[C/T]TTCCTTGAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGTTGTTTTCAATCCGGTGTTTCTTATTTTCTCCATGTTGCGATTTCCT</left_flank>
        <right_flank>TTCCTTGAATTATTAAAAGGGCATCGATAGTTTATATTATGAAGTTTCAT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCCAGTGAAAGATATTAAAAAGCTGTCAACTGATAAATTTTTGAACATAATATGAAACTTTCTTTAGTTGAAAACTTTTTGATATCTTGCATAGGAATTGAGGTGATTGAGCTCAAACAAAAGACAGTGTGCGGGCCCTTCTATTACAGGTTTAAAATATTAAAATCTGTCAGAAAACGTGTGTCGTATATTTGGCCATACAAAAAAAGTGGAAAAGAGAAAAAGAGAGAGTGGGAGAGACACTCCCGTGTCGCATCAAAAGGAGTACTTCCCCAACCTTGACCGCGTTTTAACACATGCTAAAGTACACATATTTCTGTTGGATTGCCATATCAACTTTTAATTAATGATCATCGTGATAAAAAGTACATAATTTATTAAATAAAATCGACAAAAAAGTTTTACAAAATGCAATTTTCTTTTCCCAATTGAACACGGACACTTCCTGGGTTGTTTTCAATCCGGTGTTTCTTATTTTCTCCATGTTGCGATTTCCTCTTCCTTGAATTATTAAAAGGGCATCGATAGTTTATATTATGAAGTTTCATTCATTTTTGTCATTTGTCTCCATGAAGAACCGTCCTCAACTTCTGGACAAGCAAACTCCGTAAACACTCTGATAGAATGCCCCGAAATCGTCAAATTTAAGCTAATATATCTCACTTCCTATGCAAGATTTCAAAAAGTAGTCAATCAATAAAACATTGGTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATATCTTCTACATGAACCGAGATAAATTGACTCAAAGATGACTGTTCCCATCCTGAACGAAGCCTACCCTATACGTGCACTTTGAACTCATTTATTTCGGTTTTGAGAGGCACTAAAAAGTAGTCAACTAATAAAATTATTATCATAATATCAGCAATATTTTATCAATTGACCACTTTTTGATATCTTTCACAGAAAATGAGATATACGGGCTCAACGTTGACGGTAAGGGAGCCTTTCCATTGATGTT</canonical>
            <polymorphic>GTTCCAGTGAAAGATATTAAAAAGCTGTCAACTGATAAATTTTTGAACATAATATGAAACTTTCTTTAGTTGAAAACTTTTTGATATCTTGCATAGGAATTGAGGTGATTGAGCTCAAACAAAAGACAGTGTGCGGGCCCTTCTATTACAGGTTTAAAATATTAAAATCTGTCAGAAAACGTGTGTCGTATATTTGGCCATACAAAAAAAGTGGAAAAGAGAAAAAGAGAGAGTGGGAGAGACACTCCCGTGTCGCATCAAAAGGAGTACTTCCCCAACCTTGACCGCGTTTTAACACATGCTAAAGTACACATATTTCTGTTGGATTGCCATATCAACTTTTAATTAATGATCATCGTGATAAAAAGTACATAATTTATTAAATAAAATCGACAAAAAAGTTTTACAAAATGCAATTTTCTTTTCCCAATTGAACACGGACACTTCCTGGGTTGTTTTCAATCCGGTGTTTCTTATTTTCTCCATGTTGCGATTTCCTYTTCCTTGAATTATTAAAAGGGCATCGATAGTTTATATTATGAAGTTTCATTCATTTTTGTCATTTGTCTCCATGAAGAACCGTCCTCAACTTCTGGACAAGCAAACTCCGTAAACACTCTGATAGAATGCCCCGAAATCGTCAAATTTAAGCTAATATATCTCACTTCCTATGCAAGATTTCAAAAAGTAGTCAATCAATAAAACATTGGTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATATCTTCTACATGAACCGAGATAAATTGACTCAAAGATGACTGTTCCCATCCTGAACGAAGCCTACCCTATACGTGCACTTTGAACTCATTTATTTCGGTTTTGAGAGGCACTAAAAAGTAGTCAACTAATAAAATTATTATCATAATATCAGCAATATTTTATCAATTGACCACTTTTTGATATCTTTCACAGAAAATGAGATATACGGGCTCAACGTTGACGGTAAGGGAGCCTTTCCATTGATGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATCATCGTGATAAAAAGTACA</pcr_primer_p1>
		<pcr_primer_p2>AGAAGTTGAGGACGGTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TGATCATCGTGATAAAAAGTACATAATTTATTAAATAAAATCGACAAAAAAGTTTTACAAAATGCAATTTTCTTTTCCCAATTGAACACGGACACTTCCTGGGTTGTTTTCAATCCGGTGTTTCTTATTTTCTCCATGTTGCGATTTCCTCTTCCTTGAATTATTAAAAGGGCATCGATAGTTTATATTATGAAGTTTCATTCATTTTTGTCATTTGTCTCCATGAAGAACCGTCCTCAACTTCT</canonical_amplicon>
		<polymorphic_amplicon>TGATCATCGTGATAAAAAGTACATAATTTATTAAATAAAATCGACAAAAAAGTTTTACAAAATGCAATTTTCTTTTCCCAATTGAACACGGACACTTCCTGGGTTGTTTTCAATCCGGTGTTTCTTATTTTCTCCATGTTGCGATTTCCTYTTCCTTGAATTATTAAAAGGGCATCGATAGTTTATATTATGAAGTTTCATTCATTTTTGTCATTTGTCTCCATGAAGAACCGTCCTCAACTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12590</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>332339</contig_pos>
        <strand>+</strand>
        <context>GAGTCTCCTC[A/G]ACCACCGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTCGTCCGAACAACGACGCGGCCTTCGGTGCCTCTTTTGGAGTCTCCTC</left_flank>
        <right_flank>ACCACCGAAAAATGCCCTTTTTTCGAAATTTGGGACAAAACAGTCCGCAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCAGCAAAAATTAAACTCTGGCACAAATCTCTGACACATCCTGAATGATGGATTGAATCAGCGTCTCGTCGCCAGCTTTTCCGTCGATTTGGAGTCCATCGGTCTAGAAAAATAGACTACTAAATTGGCCAAAAAATGAAGCCCAGAAAAAGCCCTGCGGTCGAAAATCGGCCACCGACCGCCAACCAATCGCCAACCGACCGCCAACCAATCGCCGACCAACCGCCGTCTAATCGGCGACCAATCGCCGACCAACCGCCGACCAACCGCCGACCGACGACTAATCGGCGACCGACCGCCGACCGACAGCCGACCTATCGCCGACCGACCACCGACCGACGACCAATAATTGCCATCTTCGGCCCAAAAAGCCTAAAAGCCTAAAAAATCAAAAAATCAATACTTACCGTCTTCTTAACAAGCAAGCAAATTGGCTGCCCGCCAACAGTTCGTCCGAACAACGACGCGGCCTTCGGTGCCTCTTTTGGAGTCTCCTCGACCACCGAAAAATGCCCTTTTTTCGAAATTTGGGACAAAACAGTCCGCAATTTCAGATCCGGGCTAGTTTTGACACTCTGCGACGCCACAAAATCGACCTCATCCGAAGCCAGCAACGCCGACCAGTCATCTTTTCGGATTGAGGAGTTTGGAATGACGAAGACCACTGAAGGAAGGGGAAGGCGAAGGTCCAGTTTGTCGTCTCGCGTGCCTTCATCGTCCTGGAAAAAAATTTCGGAAAATTATCATTTCGGTCGAGAAGTTCAGCTGACCGATCGACCGCCGACCGACCGCCGGTCTAGCTGACCAACCGTCGATCAAGCCGAGCGACCACTGATTTAGGCCACCGACCGCAGACCGAGATCTGATCCAGCCAACTGATCGCCAACCGACCGTTCGGCGATCCAGCCAACCGACCGCAGACCGGCAGCCGATCCAGCCGTTCGAGCTGACCGACTGTCGATCAAGCCGGCCGACCGCCGACCCAGCCAACCAACCGG</canonical>
            <polymorphic>ACTCAGCAAAAATTAAACTCTGGCACAAATCTCTGACACATCCTGAATGATGGATTGAATCAGCGTCTCGTCGCCAGCTTTTCCGTCGATTTGGAGTCCATCGGTCTAGAAAAATAGACTACTAAATTGGCCAAAAAATGAAGCCCAGAAAAAGCCCTGCGGTCGAAAATCGGCCACCGACCGCCAACCAATCGCCAACCGACCGCCAACCAATCGCCGACCAACCGCCGTCTAATCGGCGACCAATCGCCGACCAACCGCCGACCAACCGCCGACCGACGACTAATCGGCGACCGACCGCCGACCGACAGCCGACCTATCGCCGACCGACCACCGACCGACGACCAATAATTGCCATCTTCGGCCCAAAAAGCCTAAAAGCCTAAAAAATCAAAAAATCAATACTTACCGTCTTCTTAACAAGCAAGCAAATTGGCTGCCCGCCAACAGTTCGTCCGAACAACGACGCGGCCTTCGGTGCCTCTTTTGGAGTCTCCTCRACCACCGAAAAATGCCCTTTTTTCGAAATTTGGGACAAAACAGTCCGCAATTTCAGATCCGGGCTAGTTTTGACACTCTGCGACGCCACAAAATCGACCTCATCCGAAGCCAGCAACGCCGACCAGTCATCTTTTCGGATTGAGGAGTTTGGAATGACGAAGACCACTGAAGGAAGGGGAAGGCGAAGGTCCAGTTTGTCGTCTCGCGTGCCTTCATCGTCCTGGAAAAAAATTTCGGAAAATTATCATTTCGGTCGAGAAGTTCAGCTGACCGATCGACCGCCGACCGACCGCCGGTCTAGCTGACCAACCGTCGATCAAGCCGAGCGACCACTGATTTAGGCCACCGACCGCAGACCGAGATCTGATCCAGCCAACTGATCGCCAACCGACCGTTCGGCGATCCAGCCAACCGACCGCAGACCGGCAGCCGATCCAGCCGTTCGAGCTGACCGACTGTCGATCAAGCCGGCCGACCGCCGACCCAGCCAACCAACCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>335 161 130 87 77 71 39 38 25 21 16</canonical_bands>
                <polymorphic_bands>360 161 130 87 77 71 39 38 21 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTCTTAACAAGCAAGCAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTCATTCCAAACTCCTCAATC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTTCTTAACAAGCAAGCAAATTGGCTGCCCGCCAACAGTTCGTCCGAACAACGACGCGGCCTTCGGTGCCTCTTTTGGAGTCTCCTCGACCACCGAAAAATGCCCTTTTTTCGAAATTTGGGACAAAACAGTCCGCAATTTCAGATCCGGGCTAGTTTTGACACTCTGCGACGCCACAAAATCGACCTCATCCGAAGCCAGCAACGCCGACCAGTCATCTTTTCGGATTGAGGAGTTTGGAATGAC</canonical_amplicon>
		<polymorphic_amplicon>TCTTCTTAACAAGCAAGCAAATTGGCTGCCCGCCAACAGTTCGTCCGAACAACGACGCGGCCTTCGGTGCCTCTTTTGGAGTCTCCTCRACCACCGAAAAATGCCCTTTTTTCGAAATTTGGGACAAAACAGTCCGCAATTTCAGATCCGGGCTAGTTTTGACACTCTGCGACGCCACAAAATCGACCTCATCCGAAGCCAGCAACGCCGACCAGTCATCTTTTCGGATTGAGGAGTTTGGAATGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12591</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>332399</contig_pos>
        <strand>+</strand>
        <context>ATTTCAGATC[C/T]GGGCTAGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATGCCCTTTTTTCGAAATTTGGGACAAAACAGTCCGCAATTTCAGATC</left_flank>
        <right_flank>GGGCTAGTTTTGACACTCTGCGACGCCACAAAATCGACCTCATCCGAAGC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGCGTCTCGTCGCCAGCTTTTCCGTCGATTTGGAGTCCATCGGTCTAGAAAAATAGACTACTAAATTGGCCAAAAAATGAAGCCCAGAAAAAGCCCTGCGGTCGAAAATCGGCCACCGACCGCCAACCAATCGCCAACCGACCGCCAACCAATCGCCGACCAACCGCCGTCTAATCGGCGACCAATCGCCGACCAACCGCCGACCAACCGCCGACCGACGACTAATCGGCGACCGACCGCCGACCGACAGCCGACCTATCGCCGACCGACCACCGACCGACGACCAATAATTGCCATCTTCGGCCCAAAAAGCCTAAAAGCCTAAAAAATCAAAAAATCAATACTTACCGTCTTCTTAACAAGCAAGCAAATTGGCTGCCCGCCAACAGTTCGTCCGAACAACGACGCGGCCTTCGGTGCCTCTTTTGGAGTCTCCTCGACCACCGAAAAATGCCCTTTTTTCGAAATTTGGGACAAAACAGTCCGCAATTTCAGATCCGGGCTAGTTTTGACACTCTGCGACGCCACAAAATCGACCTCATCCGAAGCCAGCAACGCCGACCAGTCATCTTTTCGGATTGAGGAGTTTGGAATGACGAAGACCACTGAAGGAAGGGGAAGGCGAAGGTCCAGTTTGTCGTCTCGCGTGCCTTCATCGTCCTGGAAAAAAATTTCGGAAAATTATCATTTCGGTCGAGAAGTTCAGCTGACCGATCGACCGCCGACCGACCGCCGGTCTAGCTGACCAACCGTCGATCAAGCCGAGCGACCACTGATTTAGGCCACCGACCGCAGACCGAGATCTGATCCAGCCAACTGATCGCCAACCGACCGTTCGGCGATCCAGCCAACCGACCGCAGACCGGCAGCCGATCCAGCCGTTCGAGCTGACCGACTGTCGATCAAGCCGGCCGACCGCCGACCCAGCCAACCAACCGGCGACCGACCGCCGATCTAACCCACAAGCCGACAACCTATGGGCGGTCGGTCGTCGGTCGA</canonical>
            <polymorphic>CAGCGTCTCGTCGCCAGCTTTTCCGTCGATTTGGAGTCCATCGGTCTAGAAAAATAGACTACTAAATTGGCCAAAAAATGAAGCCCAGAAAAAGCCCTGCGGTCGAAAATCGGCCACCGACCGCCAACCAATCGCCAACCGACCGCCAACCAATCGCCGACCAACCGCCGTCTAATCGGCGACCAATCGCCGACCAACCGCCGACCAACCGCCGACCGACGACTAATCGGCGACCGACCGCCGACCGACAGCCGACCTATCGCCGACCGACCACCGACCGACGACCAATAATTGCCATCTTCGGCCCAAAAAGCCTAAAAGCCTAAAAAATCAAAAAATCAATACTTACCGTCTTCTTAACAAGCAAGCAAATTGGCTGCCCGCCAACAGTTCGTCCGAACAACGACGCGGCCTTCGGTGCCTCTTTTGGAGTCTCCTCGACCACCGAAAAATGCCCTTTTTTCGAAATTTGGGACAAAACAGTCCGCAATTTCAGATCYGGGCTAGTTTTGACACTCTGCGACGCCACAAAATCGACCTCATCCGAAGCCAGCAACGCCGACCAGTCATCTTTTCGGATTGAGGAGTTTGGAATGACGAAGACCACTGAAGGAAGGGGAAGGCGAAGGTCCAGTTTGTCGTCTCGCGTGCCTTCATCGTCCTGGAAAAAAATTTCGGAAAATTATCATTTCGGTCGAGAAGTTCAGCTGACCGATCGACCGCCGACCGACCGCCGGTCTAGCTGACCAACCGTCGATCAAGCCGAGCGACCACTGATTTAGGCCACCGACCGCAGACCGAGATCTGATCCAGCCAACTGATCGCCAACCGACCGTTCGGCGATCCAGCCAACCGACCGCAGACCGGCAGCCGATCCAGCCGTTCGAGCTGACCGACTGTCGATCAAGCCGGCCGACCGCCGACCCAGCCAACCAACCGGCGACCGACCGCCGATCTAACCCACAAGCCGACAACCTATGGGCGGTCGGTCGTCGGTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>500 338 162</canonical_bands>
                <polymorphic_bands>662 338</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 235 130 63 45 28</canonical_bands>
                <polymorphic_bands>734 130 63 45 28</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>495 306 199</canonical_bands>
                <polymorphic_bands>801 199</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTCTTAACAAGCAAGCAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTCATTCCAAACTCCTCAATC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTTCTTAACAAGCAAGCAAATTGGCTGCCCGCCAACAGTTCGTCCGAACAACGACGCGGCCTTCGGTGCCTCTTTTGGAGTCTCCTCGACCACCGAAAAATGCCCTTTTTTCGAAATTTGGGACAAAACAGTCCGCAATTTCAGATCCGGGCTAGTTTTGACACTCTGCGACGCCACAAAATCGACCTCATCCGAAGCCAGCAACGCCGACCAGTCATCTTTTCGGATTGAGGAGTTTGGAATGAC</canonical_amplicon>
		<polymorphic_amplicon>TCTTCTTAACAAGCAAGCAAATTGGCTGCCCGCCAACAGTTCGTCCGAACAACGACGCGGCCTTCGGTGCCTCTTTTGGAGTCTCCTCGACCACCGAAAAATGCCCTTTTTTCGAAATTTGGGACAAAACAGTCCGCAATTTCAGATCYGGGCTAGTTTTGACACTCTGCGACGCCACAAAATCGACCTCATCCGAAGCCAGCAACGCCGACCAGTCATCTTTTCGGATTGAGGAGTTTGGAATGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12594</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>334322</contig_pos>
        <strand>+</strand>
        <context>CGGCCGGCGC[G/T]TTGGCTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGCGGACCTGCCACCGAATCAGCCGATTAAGCTGAGTGATCGGCCGGCGC</left_flank>
        <right_flank>TTGGCTTTCATTCCGGTCGGTCAAAAATCAGCTCTGCGATCGGTCGACGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTGGGGTTAGCTGGCCGACGACCGATCTGGCCGACCGCAGAAGCAGCTGAACAATAGTCGACCCAGCCGAAGGACCGTCGACCAACCGCCGATCACGCCGACCGCCAATCAAGTCAACCGACCGCCGATTCAGCCAACTACTTTTCCAGCCGGCCGGCCACCGACCGACCGCCGATCCGGTCGACCGACCACAGATACAGGTGACCGATAGTTGCTAACCGCCGACCGACCGGCGATCCAGCTGATCGATCGCCGATCCAGTAGATCGGATTCAGCCTTTTGACCGATGTCCAACAGCCGACCCACTTCCGACCGACCACCGATTCAGCCGACCGATCGCCGATTAATCTAACCGACCGATCGCCGACCAATCTGACCGACCGATCGCCGACCAATCTGACCGAGCGCCGACCGACCGCGCTAACCGACCAGCGATCTTGCCGATCCTGCGGACCTGCCACCGAATCAGCCGATTAAGCTGAGTGATCGGCCGGCGCTTTGGCTTTCATTCCGGTCGGTCAAAAATCAGCTCTGCGATCGGTCGACGGTCCGTCAGCGGTCGAAATGTTTTGACCGACCGAAACGACATTTTTTGGCACCAAAAGTAAAATTTCGAGCTCAAAAAGAAACTGAAATCGCCTCACCTTCTCATCCTCGTCATCTGTCGATTTGGCTCCCTCGGGCATTTCTCCATCATTCCTGTTCACTTTATGCACCACCCGATCCTCTTCCTCACTGCTCGTGCTCGTCGTTCGTCGCTTCTTCTTCTTCCCACCGCCCTTCTCCTTCTTTAACGTCTTCTTCTTTTTCTTTCCAATAGAATCAGAATCCTCCTTTGCCTTCTTCCAGCTCAACGTCGAGTCCTGCTGCTCCATGTATCGATGAAGGCCAACGACGCCGGGGATCTCCAGTGGGGATTGGATTTCTTTCTCTTTTTCGGCGGCTTCGGTTCGTTCGATGGGGTTGCCGAAGCGAGTTGGGCGCTTGGGGGCGGTTGC</canonical>
            <polymorphic>GTTTGGGGTTAGCTGGCCGACGACCGATCTGGCCGACCGCAGAAGCAGCTGAACAATAGTCGACCCAGCCGAAGGACCGTCGACCAACCGCCGATCACGCCGACCGCCAATCAAGTCAACCGACCGCCGATTCAGCCAACTACTTTTCCAGCCGGCCGGCCACCGACCGACCGCCGATCCGGTCGACCGACCACAGATACAGGTGACCGATAGTTGCTAACCGCCGACCGACCGGCGATCCAGCTGATCGATCGCCGATCCAGTAGATCGGATTCAGCCTTTTGACCGATGTCCAACAGCCGACCCACTTCCGACCGACCACCGATTCAGCCGACCGATCGCCGATTAATCTAACCGACCGATCGCCGACCAATCTGACCGACCGATCGCCGACCAATCTGACCGAGCGCCGACCGACCGCGCTAACCGACCAGCGATCTTGCCGATCCTGCGGACCTGCCACCGAATCAGCCGATTAAGCTGAGTGATCGGCCGGCGCKTTGGCTTTCATTCCGGTCGGTCAAAAATCAGCTCTGCGATCGGTCGACGGTCCGTCAGCGGTCGAAATGTTTTGACCGACCGAAACGACATTTTTTGGCACCAAAAGTAAAATTTCGAGCTCAAAAAGAAACTGAAATCGCCTCACCTTCTCATCCTCGTCATCTGTCGATTTGGCTCCCTCGGGCATTTCTCCATCATTCCTGTTCACTTTATGCACCACCCGATCCTCTTCCTCACTGCTCGTGCTCGTCGTTCGTCGCTTCTTCTTCTTCCCACCGCCCTTCTCCTTCTTTAACGTCTTCTTCTTTTTCTTTCCAATAGAATCAGAATCCTCCTTTGCCTTCTTCCAGCTCAACGTCGAGTCCTGCTGCTCCATGTATCGATGAAGGCCAACGACGCCGGGGATCTCCAGTGGGGATTGGATTTCTTTCTCTTTTTCGGCGGCTTCGGTTCGTTCGATGGGGTTGCCGAAGCGAGTTGGGCGCTTGGGGGCGGTTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>487 410 89 14</canonical_bands>
                <polymorphic_bands>576 410 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCCAGTAGATCGGATTCAG</pcr_primer_p1>
		<pcr_primer_p2>GCGATTTCAGTTTCTTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>385</pcr_amplicon_size>
		<canonical_amplicon>GATCCAGTAGATCGGATTCAGCCTTTTGACCGATGTCCAACAGCCGACCCACTTCCGACCGACCACCGATTCAGCCGACCGATCGCCGATTAATCTAACCGACCGATCGCCGACCAATCTGACCGACCGATCGCCGACCAATCTGACCGAGCGCCGACCGACCGCGCTAACCGACCAGCGATCTTGCCGATCCTGCGGACCTGCCACCGAATCAGCCGATTAAGCTGAGTGATCGGCCGGCGCTTTGGCTTTCATTCCGGTCGGTCAAAAATCAGCTCTGCGATCGGTCGACGGTCCGTCAGCGGTCGAAATGTTTTGACCGACCGAAACGACATTTTTTGGCACCAAAAGTAAAATTTCGAGCTCAAAAAGAAACTGAAATCGC</canonical_amplicon>
		<polymorphic_amplicon>GATCCAGTAGATCGGATTCAGCCTTTTGACCGATGTCCAACAGCCGACCCACTTCCGACCGACCACCGATTCAGCCGACCGATCGCCGATTAATCTAACCGACCGATCGCCGACCAATCTGACCGACCGATCGCCGACCAATCTGACCGAGCGCCGACCGACCGCGCTAACCGACCAGCGATCTTGCCGATCCTGCGGACCTGCCACCGAATCAGCCGATTAAGCTGAGTGATCGGCCGGCGCKTTGGCTTTCATTCCGGTCGGTCAAAAATCAGCTCTGCGATCGGTCGACGGTCCGTCAGCGGTCGAAATGTTTTGACCGACCGAAACGACATTTTTTGGCACCAAAAGTAAAATTTCGAGCTCAAAAAGAAACTGAAATCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12595</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>334820</contig_pos>
        <strand>+</strand>
        <context>TGGGGGCGGT[C/T]GCGGAGCCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGGTTCGTTCGATGGGGTTGCCGAAGCGAGTTGGGCGCTTGGGGGCGGT</left_flank>
        <right_flank>GCGGAGCCCTGGAAATTTGTTAATTAGGGTAATTAGTTAATTAGGGCAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTGGCTTTCATTCCGGTCGGTCAAAAATCAGCTCTGCGATCGGTCGACGGTCCGTCAGCGGTCGAAATGTTTTGACCGACCGAAACGACATTTTTTGGCACCAAAAGTAAAATTTCGAGCTCAAAAAGAAACTGAAATCGCCTCACCTTCTCATCCTCGTCATCTGTCGATTTGGCTCCCTCGGGCATTTCTCCATCATTCCTGTTCACTTTATGCACCACCCGATCCTCTTCCTCACTGCTCGTGCTCGTCGTTCGTCGCTTCTTCTTCTTCCCACCGCCCTTCTCCTTCTTTAACGTCTTCTTCTTTTTCTTTCCAATAGAATCAGAATCCTCCTTTGCCTTCTTCCAGCTCAACGTCGAGTCCTGCTGCTCCATGTATCGATGAAGGCCAACGACGCCGGGGATCTCCAGTGGGGATTGGATTTCTTTCTCTTTTTCGGCGGCTTCGGTTCGTTCGATGGGGTTGCCGAAGCGAGTTGGGCGCTTGGGGGCGGTTGCGGAGCCCTGGAAATTTGTTAATTAGGGTAATTAGTTAATTAGGGCAATTTATGCTAATTAAGGGTAATGAAGCCTTTTCGAAAAAATTGGCTGATGGTTCAAAAATGATATAACAAGACCCTGGCGTGTTTTCTAGGTCATTTTGACACGGTGGCTTAACTTTTGCAAGTTTGGTTTTCTAGGCCACCATGGTAAAATGACCTAGAAAACATATCAGGGTAATATTGGACTATTTCTGGGCAATTTCAACGTGGCGGCCTAGAAAGCCCAGCTTGCGAAAGTTAGGCCACTCTGCGAAAATCGCCTAGAAATGATCTTACATGACCCTGGAGTTGTTTGTATGCCATTTAACGTGGTGGCTTAACTTCTGCAAGTTTGGTTTTCTAGGTCATCATCGTAAATTGCGTTAAAAATAAAACTGCAAAAGTAAGGCTACCATTTCAAAATGACCTAGAAATAACGCAAGCTTAATATTAGGCTATTTCTAGGTCATTTTGA</canonical>
            <polymorphic>CTTTGGCTTTCATTCCGGTCGGTCAAAAATCAGCTCTGCGATCGGTCGACGGTCCGTCAGCGGTCGAAATGTTTTGACCGACCGAAACGACATTTTTTGGCACCAAAAGTAAAATTTCGAGCTCAAAAAGAAACTGAAATCGCCTCACCTTCTCATCCTCGTCATCTGTCGATTTGGCTCCCTCGGGCATTTCTCCATCATTCCTGTTCACTTTATGCACCACCCGATCCTCTTCCTCACTGCTCGTGCTCGTCGTTCGTCGCTTCTTCTTCTTCCCACCGCCCTTCTCCTTCTTTAACGTCTTCTTCTTTTTCTTTCCAATAGAATCAGAATCCTCCTTTGCCTTCTTCCAGCTCAACGTCGAGTCCTGCTGCTCCATGTATCGATGAAGGCCAACGACGCCGGGGATCTCCAGTGGGGATTGGATTTCTTTCTCTTTTTCGGCGGCTTCGGTTCGTTCGATGGGGTTGCCGAAGCGAGTTGGGCGCTTGGGGGCGGTYGCGGAGCCCTGGAAATTTGTTAATTAGGGTAATTAGTTAATTAGGGCAATTTATGCTAATTAAGGGTAATGAAGCCTTTTCGAAAAAATTGGCTGATGGTTCAAAAATGATATAACAAGACCCTGGCGTGTTTTCTAGGTCATTTTGACACGGTGGCTTAACTTTTGCAAGTTTGGTTTTCTAGGCCACCATGGTAAAATGACCTAGAAAACATATCAGGGTAATATTGGACTATTTCTGGGCAATTTCAACGTGGCGGCCTAGAAAGCCCAGCTTGCGAAAGTTAGGCCACTCTGCGAAAATCGCCTAGAAATGATCTTACATGACCCTGGAGTTGTTTGTATGCCATTTAACGTGGTGGCTTAACTTCTGCAAGTTTGGTTTTCTAGGTCATCATCGTAAATTGCGTTAAAAATAAAACTGCAAAAGTAAGGCTACCATTTCAAAATGACCTAGAAATAACGCAAGCTTAATATTAGGCTATTTCTAGGTCATTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAGAATCAGAATCCTCCTTTG</pcr_primer_p1>
		<pcr_primer_p2>TAGCATAAATTGCCCTAATTAAC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AATAGAATCAGAATCCTCCTTTGCCTTCTTCCAGCTCAACGTCGAGTCCTGCTGCTCCATGTATCGATGAAGGCCAACGACGCCGGGGATCTCCAGTGGGGATTGGATTTCTTTCTCTTTTTCGGCGGCTTCGGTTCGTTCGATGGGGTTGCCGAAGCGAGTTGGGCGCTTGGGGGCGGTTGCGGAGCCCTGGAAATTTGTTAATTAGGGTAATTAGTTAATTAGGGCAATTTATGCTA</canonical_amplicon>
		<polymorphic_amplicon>AATAGAATCAGAATCCTCCTTTGCCTTCTTCCAGCTCAACGTCGAGTCCTGCTGCTCCATGTATCGATGAAGGCCAACGACGCCGGGGATCTCCAGTGGGGATTGGATTTCTTTCTCTTTTTCGGCGGCTTCGGTTCGTTCGATGGGGTTGCCGAAGCGAGTTGGGCGCTTGGGGGCGGTYGCGGAGCCCTGGAAATTTGTTAATTAGGGTAATTAGTTAATTAGGGCAATTTATGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12596</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>334637</contig_pos>
        <strand>+</strand>
        <context>tctttttctt[C/T]CCAATAGAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTTCTTCCCACCGCCCTTCTCCTTCTTTAACGTCTTCTTCTTTTTCTT</left_flank>
        <right_flank>CCAATAGAATCAGAATCCTCCTTTGCCTTCTTCCAGCTCAACGTCGAGTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACCACCGATTCAGCCGACCGATCGCCGATTAATCTAACCGACCGATCGCCGACCAATCTGACCGACCGATCGCCGACCAATCTGACCGAGCGCCGACCGACCGCGCTAACCGACCAGCGATCTTGCCGATCCTGCGGACCTGCCACCGAATCAGCCGATTAAGCTGAGTGATCGGCCGGCGCTTTGGCTTTCATTCCGGTCGGTCAAAAATCAGCTCTGCGATCGGTCGACGGTCCGTCAGCGGTCGAAATGTTTTGACCGACCGAAACGACATTTTTTGGCACCAAAAGTAAAATTTCGAGCTCAAAAAGAAACTGAAATCGCCTCACCTTCTCATCCTCGTCATCTGTCGATTTGGCTCCCTCGGGCATTTCTCCATCATTCCTGTTCACTTTATGCACCACCCGATCCTCTTCCTCACTGCTCGTGCTCGTCGTTCGTCGCTTCTTCTTCTTCCCACCGCCCTTCTCCTTCTTTAACGTCTTCTTCTTTTTCTTTCCAATAGAATCAGAATCCTCCTTTGCCTTCTTCCAGCTCAACGTCGAGTCCTGCTGCTCCATGTATCGATGAAGGCCAACGACGCCGGGGATCTCCAGTGGGGATTGGATTTCTTTCTCTTTTTCGGCGGCTTCGGTTCGTTCGATGGGGTTGCCGAAGCGAGTTGGGCGCTTGGGGGCGGTTGCGGAGCCCTGGAAATTTGTTAATTAGGGTAATTAGTTAATTAGGGCAATTTATGCTAATTAAGGGTAATGAAGCCTTTTCGAAAAAATTGGCTGATGGTTCAAAAATGATATAACAAGACCCTGGCGTGTTTTCTAGGTCATTTTGACACGGTGGCTTAACTTTTGCAAGTTTGGTTTTCTAGGCCACCATGGTAAAATGACCTAGAAAACATATCAGGGTAATATTGGACTATTTCTGGGCAATTTCAACGTGGCGGCCTAGAAAGCCCAGCTTGCGAAAGTTAGGCCACTCTGCGAAAATCGCCTAGAAATGAT</canonical>
            <polymorphic>CGACCACCGATTCAGCCGACCGATCGCCGATTAATCTAACCGACCGATCGCCGACCAATCTGACCGACCGATCGCCGACCAATCTGACCGAGCGCCGACCGACCGCGCTAACCGACCAGCGATCTTGCCGATCCTGCGGACCTGCCACCGAATCAGCCGATTAAGCTGAGTGATCGGCCGGCGCTTTGGCTTTCATTCCGGTCGGTCAAAAATCAGCTCTGCGATCGGTCGACGGTCCGTCAGCGGTCGAAATGTTTTGACCGACCGAAACGACATTTTTTGGCACCAAAAGTAAAATTTCGAGCTCAAAAAGAAACTGAAATCGCCTCACCTTCTCATCCTCGTCATCTGTCGATTTGGCTCCCTCGGGCATTTCTCCATCATTCCTGTTCACTTTATGCACCACCCGATCCTCTTCCTCACTGCTCGTGCTCGTCGTTCGTCGCTTCTTCTTCTTCCCACCGCCCTTCTCCTTCTTTAACGTCTTCTTCTTTTTCTTYCCAATAGAATCAGAATCCTCCTTTGCCTTCTTCCAGCTCAACGTCGAGTCCTGCTGCTCCATGTATCGATGAAGGCCAACGACGCCGGGGATCTCCAGTGGGGATTGGATTTCTTTCTCTTTTTCGGCGGCTTCGGTTCGTTCGATGGGGTTGCCGAAGCGAGTTGGGCGCTTGGGGGCGGTTGCGGAGCCCTGGAAATTTGTTAATTAGGGTAATTAGTTAATTAGGGCAATTTATGCTAATTAAGGGTAATGAAGCCTTTTCGAAAAAATTGGCTGATGGTTCAAAAATGATATAACAAGACCCTGGCGTGTTTTCTAGGTCATTTTGACACGGTGGCTTAACTTTTGCAAGTTTGGTTTTCTAGGCCACCATGGTAAAATGACCTAGAAAACATATCAGGGTAATATTGGACTATTTCTGGGCAATTTCAACGTGGCGGCCTAGAAAGCCCAGCTTGCGAAAGTTAGGCCACTCTGCGAAAATCGCCTAGAAATGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCATTCCTGTTCACTTTATG</pcr_primer_p1>
		<pcr_primer_p2>GAAAAAGAGAAAGAAATCCAATC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CATCATTCCTGTTCACTTTATGCACCACCCGATCCTCTTCCTCACTGCTCGTGCTCGTCGTTCGTCGCTTCTTCTTCTTCCCACCGCCCTTCTCCTTCTTTAACGTCTTCTTCTTTTTCTTTCCAATAGAATCAGAATCCTCCTTTGCCTTCTTCCAGCTCAACGTCGAGTCCTGCTGCTCCATGTATCGATGAAGGCCAACGACGCCGGGGATCTCCAGTGGGGATTGGATTTCTTTCTCTTTTTC</canonical_amplicon>
		<polymorphic_amplicon>CATCATTCCTGTTCACTTTATGCACCACCCGATCCTCTTCCTCACTGCTCGTGCTCGTCGTTCGTCGCTTCTTCTTCTTCCCACCGCCCTTCTCCTTCTTTAACGTCTTCTTCTTTTTCTTYCCAATAGAATCAGAATCCTCCTTTGCCTTCTTCCAGCTCAACGTCGAGTCCTGCTGCTCCATGTATCGATGAAGGCCAACGACGCCGGGGATCTCCAGTGGGGATTGGATTTCTTTCTCTTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12651</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>334553</contig_pos>
        <strand>+</strand>
        <context>CCCGATCCTC[C/T]TCCTCACTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGGGCATTTCTCCATCATTCCTGTTCACTTTATGCACCACCCGATCCTC</left_flank>
        <right_flank>TCCTCACTGCTCGTGCTCGTCGTTCGTCGCTTCTTCTTCTTCCCACCGCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGGCGATCCAGCTGATCGATCGCCGATCCAGTAGATCGGATTCAGCCTTTTGACCGATGTCCAACAGCCGACCCACTTCCGACCGACCACCGATTCAGCCGACCGATCGCCGATTAATCTAACCGACCGATCGCCGACCAATCTGACCGACCGATCGCCGACCAATCTGACCGAGCGCCGACCGACCGCGCTAACCGACCAGCGATCTTGCCGATCCTGCGGACCTGCCACCGAATCAGCCGATTAAGCTGAGTGATCGGCCGGCGCTTTGGCTTTCATTCCGGTCGGTCAAAAATCAGCTCTGCGATCGGTCGACGGTCCGTCAGCGGTCGAAATGTTTTGACCGACCGAAACGACATTTTTTGGCACCAAAAGTAAAATTTCGAGCTCAAAAAGAAACTGAAATCGCCTCACCTTCTCATCCTCGTCATCTGTCGATTTGGCTCCCTCGGGCATTTCTCCATCATTCCTGTTCACTTTATGCACCACCCGATCCTCTTCCTCACTGCTCGTGCTCGTCGTTCGTCGCTTCTTCTTCTTCCCACCGCCCTTCTCCTTCTTTAACGTCTTCTTCTTTTTCTTTCCAATAGAATCAGAATCCTCCTTTGCCTTCTTCCAGCTCAACGTCGAGTCCTGCTGCTCCATGTATCGATGAAGGCCAACGACGCCGGGGATCTCCAGTGGGGATTGGATTTCTTTCTCTTTTTCGGCGGCTTCGGTTCGTTCGATGGGGTTGCCGAAGCGAGTTGGGCGCTTGGGGGCGGTTGCGGAGCCCTGGAAATTTGTTAATTAGGGTAATTAGTTAATTAGGGCAATTTATGCTAATTAAGGGTAATGAAGCCTTTTCGAAAAAATTGGCTGATGGTTCAAAAATGATATAACAAGACCCTGGCGTGTTTTCTAGGTCATTTTGACACGGTGGCTTAACTTTTGCAAGTTTGGTTTTCTAGGCCACCATGGTAAAATGACCTAGAAAACATATCAGGGTAATATTGGACT</canonical>
            <polymorphic>CCGGCGATCCAGCTGATCGATCGCCGATCCAGTAGATCGGATTCAGCCTTTTGACCGATGTCCAACAGCCGACCCACTTCCGACCGACCACCGATTCAGCCGACCGATCGCCGATTAATCTAACCGACCGATCGCCGACCAATCTGACCGACCGATCGCCGACCAATCTGACCGAGCGCCGACCGACCGCGCTAACCGACCAGCGATCTTGCCGATCCTGCGGACCTGCCACCGAATCAGCCGATTAAGCTGAGTGATCGGCCGGCGCTTTGGCTTTCATTCCGGTCGGTCAAAAATCAGCTCTGCGATCGGTCGACGGTCCGTCAGCGGTCGAAATGTTTTGACCGACCGAAACGACATTTTTTGGCACCAAAAGTAAAATTTCGAGCTCAAAAAGAAACTGAAATCGCCTCACCTTCTCATCCTCGTCATCTGTCGATTTGGCTCCCTCGGGCATTTCTCCATCATTCCTGTTCACTTTATGCACCACCCGATCCTCYTCCTCACTGCTCGTGCTCGTCGTTCGTCGCTTCTTCTTCTTCCCACCGCCCTTCTCCTTCTTTAACGTCTTCTTCTTTTTCTTTCCAATAGAATCAGAATCCTCCTTTGCCTTCTTCCAGCTCAACGTCGAGTCCTGCTGCTCCATGTATCGATGAAGGCCAACGACGCCGGGGATCTCCAGTGGGGATTGGATTTCTTTCTCTTTTTCGGCGGCTTCGGTTCGTTCGATGGGGTTGCCGAAGCGAGTTGGGCGCTTGGGGGCGGTTGCGGAGCCCTGGAAATTTGTTAATTAGGGTAATTAGTTAATTAGGGCAATTTATGCTAATTAAGGGTAATGAAGCCTTTTCGAAAAAATTGGCTGATGGTTCAAAAATGATATAACAAGACCCTGGCGTGTTTTCTAGGTCATTTTGACACGGTGGCTTAACTTTTGCAAGTTTGGTTTTCTAGGCCACCATGGTAAAATGACCTAGAAAACATATCAGGGTAATATTGGACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGGCACCAAAAGTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAGGAGGATTCTGATTCTATTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTGGCACCAAAAGTAAAATTTCGAGCTCAAAAAGAAACTGAAATCGCCTCACCTTCTCATCCTCGTCATCTGTCGATTTGGCTCCCTCGGGCATTTCTCCATCATTCCTGTTCACTTTATGCACCACCCGATCCTCTTCCTCACTGCTCGTGCTCGTCGTTCGTCGCTTCTTCTTCTTCCCACCGCCCTTCTCCTTCTTTAACGTCTTCTTCTTTTTCTTTCCAATAGAATCAGAATCCTCCTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTGGCACCAAAAGTAAAATTTCGAGCTCAAAAAGAAACTGAAATCGCCTCACCTTCTCATCCTCGTCATCTGTCGATTTGGCTCCCTCGGGCATTTCTCCATCATTCCTGTTCACTTTATGCACCACCCGATCCTCYTCCTCACTGCTCGTGCTCGTCGTTCGTCGCTTCTTCTTCTTCCCACCGCCCTTCTCCTTCTTTAACGTCTTCTTCTTTTTCTTTCCAATAGAATCAGAATCCTCCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12652</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>334442</contig_pos>
        <strand>+</strand>
        <context>AAATTTCGAG[C/T]TCAAAAAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGACCGACCGAAACGACATTTTTTGGCACCAAAAGTAAAATTTCGAG</left_flank>
        <right_flank>TCAAAAAGAAACTGAAATCGCCTCACCTTCTCATCCTCGTCATCTGTCGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGACCGCCGATTCAGCCAACTACTTTTCCAGCCGGCCGGCCACCGACCGACCGCCGATCCGGTCGACCGACCACAGATACAGGTGACCGATAGTTGCTAACCGCCGACCGACCGGCGATCCAGCTGATCGATCGCCGATCCAGTAGATCGGATTCAGCCTTTTGACCGATGTCCAACAGCCGACCCACTTCCGACCGACCACCGATTCAGCCGACCGATCGCCGATTAATCTAACCGACCGATCGCCGACCAATCTGACCGACCGATCGCCGACCAATCTGACCGAGCGCCGACCGACCGCGCTAACCGACCAGCGATCTTGCCGATCCTGCGGACCTGCCACCGAATCAGCCGATTAAGCTGAGTGATCGGCCGGCGCTTTGGCTTTCATTCCGGTCGGTCAAAAATCAGCTCTGCGATCGGTCGACGGTCCGTCAGCGGTCGAAATGTTTTGACCGACCGAAACGACATTTTTTGGCACCAAAAGTAAAATTTCGAGCTCAAAAAGAAACTGAAATCGCCTCACCTTCTCATCCTCGTCATCTGTCGATTTGGCTCCCTCGGGCATTTCTCCATCATTCCTGTTCACTTTATGCACCACCCGATCCTCTTCCTCACTGCTCGTGCTCGTCGTTCGTCGCTTCTTCTTCTTCCCACCGCCCTTCTCCTTCTTTAACGTCTTCTTCTTTTTCTTTCCAATAGAATCAGAATCCTCCTTTGCCTTCTTCCAGCTCAACGTCGAGTCCTGCTGCTCCATGTATCGATGAAGGCCAACGACGCCGGGGATCTCCAGTGGGGATTGGATTTCTTTCTCTTTTTCGGCGGCTTCGGTTCGTTCGATGGGGTTGCCGAAGCGAGTTGGGCGCTTGGGGGCGGTTGCGGAGCCCTGGAAATTTGTTAATTAGGGTAATTAGTTAATTAGGGCAATTTATGCTAATTAAGGGTAATGAAGCCTTTTCGAAAAAATTGGCTGATGGTTCAAAAATGATATAACAAGACC</canonical>
            <polymorphic>CGACCGCCGATTCAGCCAACTACTTTTCCAGCCGGCCGGCCACCGACCGACCGCCGATCCGGTCGACCGACCACAGATACAGGTGACCGATAGTTGCTAACCGCCGACCGACCGGCGATCCAGCTGATCGATCGCCGATCCAGTAGATCGGATTCAGCCTTTTGACCGATGTCCAACAGCCGACCCACTTCCGACCGACCACCGATTCAGCCGACCGATCGCCGATTAATCTAACCGACCGATCGCCGACCAATCTGACCGACCGATCGCCGACCAATCTGACCGAGCGCCGACCGACCGCGCTAACCGACCAGCGATCTTGCCGATCCTGCGGACCTGCCACCGAATCAGCCGATTAAGCTGAGTGATCGGCCGGCGCTTTGGCTTTCATTCCGGTCGGTCAAAAATCAGCTCTGCGATCGGTCGACGGTCCGTCAGCGGTCGAAATGTTTTGACCGACCGAAACGACATTTTTTGGCACCAAAAGTAAAATTTCGAGYTCAAAAAGAAACTGAAATCGCCTCACCTTCTCATCCTCGTCATCTGTCGATTTGGCTCCCTCGGGCATTTCTCCATCATTCCTGTTCACTTTATGCACCACCCGATCCTCTTCCTCACTGCTCGTGCTCGTCGTTCGTCGCTTCTTCTTCTTCCCACCGCCCTTCTCCTTCTTTAACGTCTTCTTCTTTTTCTTTCCAATAGAATCAGAATCCTCCTTTGCCTTCTTCCAGCTCAACGTCGAGTCCTGCTGCTCCATGTATCGATGAAGGCCAACGACGCCGGGGATCTCCAGTGGGGATTGGATTTCTTTCTCTTTTTCGGCGGCTTCGGTTCGTTCGATGGGGTTGCCGAAGCGAGTTGGGCGCTTGGGGGCGGTTGCGGAGCCCTGGAAATTTGTTAATTAGGGTAATTAGTTAATTAGGGCAATTTATGCTAATTAAGGGTAATGAAGCCTTTTCGAAAAAATTGGCTGATGGTTCAAAAATGATATAACAAGACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>269 237 232 123 88 51</canonical_bands>
                <polymorphic_bands>320 269 237 123 51</polymorphic_bands>
            </assay>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 372 127</canonical_bands>
                <polymorphic_bands>628 372</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>501 385 114</canonical_bands>
                <polymorphic_bands>886 114</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 258 127 114</canonical_bands>
                <polymorphic_bands>628 258 114</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>176 141 88 84 68 59 56 55 39 34 31 30 27 22 18 16 15 12 12 9 4 4</canonical_bands>
                <polymorphic_bands>176 144 141 84 68 59 55 39 34 31 30 27 22 18 16 15 12 12 9 4 4</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCCAGTAGATCGGATTCAG</pcr_primer_p1>
		<pcr_primer_p2>GAACAGGAATGATGGAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>451</pcr_amplicon_size>
		<canonical_amplicon>GATCCAGTAGATCGGATTCAGCCTTTTGACCGATGTCCAACAGCCGACCCACTTCCGACCGACCACCGATTCAGCCGACCGATCGCCGATTAATCTAACCGACCGATCGCCGACCAATCTGACCGACCGATCGCCGACCAATCTGACCGAGCGCCGACCGACCGCGCTAACCGACCAGCGATCTTGCCGATCCTGCGGACCTGCCACCGAATCAGCCGATTAAGCTGAGTGATCGGCCGGCGCTTTGGCTTTCATTCCGGTCGGTCAAAAATCAGCTCTGCGATCGGTCGACGGTCCGTCAGCGGTCGAAATGTTTTGACCGACCGAAACGACATTTTTTGGCACCAAAAGTAAAATTTCGAGCTCAAAAAGAAACTGAAATCGCCTCACCTTCTCATCCTCGTCATCTGTCGATTTGGCTCCCTCGGGCATTTCTCCATCATTCCTGTTC</canonical_amplicon>
		<polymorphic_amplicon>GATCCAGTAGATCGGATTCAGCCTTTTGACCGATGTCCAACAGCCGACCCACTTCCGACCGACCACCGATTCAGCCGACCGATCGCCGATTAATCTAACCGACCGATCGCCGACCAATCTGACCGACCGATCGCCGACCAATCTGACCGAGCGCCGACCGACCGCGCTAACCGACCAGCGATCTTGCCGATCCTGCGGACCTGCCACCGAATCAGCCGATTAAGCTGAGTGATCGGCCGGCGCTTTGGCTTTCATTCCGGTCGGTCAAAAATCAGCTCTGCGATCGGTCGACGGTCCGTCAGCGGTCGAAATGTTTTGACCGACCGAAACGACATTTTTTGGCACCAAAAGTAAAATTTCGAGYTCAAAAAGAAACTGAAATCGCCTCACCTTCTCATCCTCGTCATCTGTCGATTTGGCTCCCTCGGGCATTTCTCCATCATTCCTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12656</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>335993</contig_pos>
        <strand></strand>
        <context>GCGACATTAG[G/C]GAGCAGTAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AGACTGTCGATTTGATCCCAATCGTCTTCTTCCTCGGCTTGCGACATTAG</left_flank>
        <right_flank>GAGCAGTAGAGTTTTCCGATGTTCTGAACGTAGACAGAGAGAATGTGGCC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTTCGTCTCTCCTCCATCTCCTCCTTGCTCATCTCTCCACTCTTCTTTCCCTTCTTCCCCTTATTTCCCTTCTTATGGTCCTCAGCAGCCTCTTCAACGTCTTCCTCCATATCTCCAATGTCCATTTTCGGCCGTGTAATCGGCGCTCCAAACATTTCCTCCAAATCCGACTCCTCCTCAGCTTCCTCGGATTCTGACACCCATTCATCCCCAATCCACGCATCCAAATCTAGACCATCTGGCACTGGAACCTTCCTCTGGGCTTTGGTAGCCACTGGATTCAACTCTCCATCGTACAACTTTTGAAGCTCGCCGCCCATCTTCTCCTTCTTCTGATGACGTTGTTCGATGATTCTGATGATTGTCATTAGGTTGCACGCACGCTCCTGAGCTTCTAGATGCTCCGAGAGCTCGAATTGTGGGAGTTTCGAGAGCATTAGGTTGTCTAGACTGTCGATTTGATCCCAATCGTCTTCTTCCTCGGCTTGCGACATTAGGGAGCAGTAGAGTTTTCCGATGTTCTGAACGTAGACAGAGAGAATGTGGCCGGGCATTACAGATGGCTTGGCTTTGAGCATGGACTCTAGAACATTCTGCTGGTTGCGGACATGTCTGAAAATGAACTTTCTATGTTTATCTGCTCTGATCCTTGAATTTTTTGACTCGAATAATCGATAATTTGACGCAATTTGGCATGAATAAAGCTTCCATTTTGGTCGGTGCTAAATTTTCGACCTAGCCGACCGACCGCCGACCAATTTAAAAAAAAATCGATAATTTTCAAAATTCAAAAATTTGGAAAATTGGAATATTCCGGAATCTCAAAAAATTTGAAAAATGGCTTAACATGACCCTGGTGTGTTTTCTAGGCCATTTTGGCGTGGTGGCCTAACTATTGCAAGTTTGGTTTTCTCGGCCACCAGTTTTTTTGGCCTAGAAATAGGCTAGTATGACCCGTGCGTGTTTTAGGTCATTTTTACTTGGTGGCCTAACTTTCG</canonical>
            <polymorphic>GTCTTCGTCTCTCCTCCATCTCCTCCTTGCTCATCTCTCCACTCTTCTTTCCCTTCTTCCCCTTATTTCCCTTCTTATGGTCCTCAGCAGCCTCTTCAACGTCTTCCTCCATATCTCCAATGTCCATTTTCGGCCGTGTAATCGGCGCTCCAAACATTTCCTCCAAATCCGACTCCTCCTCAGCTTCCTCGGATTCTGACACCCATTCATCCCCAATCCACGCATCCAAATCTAGACCATCTGGCACTGGAACCTTCCTCTGGGCTTTGGTAGCCACTGGATTCAACTCTCCATCGTACAACTTTTGAAGCTCGCCGCCCATCTTCTCCTTCTTCTGATGACGTTGTTCGATGATTCTGATGATTGTCATTAGGTTGCACGCACGCTCCTGAGCTTCTAGATGCTCCGAGAGCTCGAATTGTGGGAGTTTCGAGAGCATTAGGTTGTCTAGACTGTCGATTTGATCCCAATCGTCTTCTTCCTCGGCTTGCGACATTAGSGAGCAGTAGAGTTTTCCGATGTTCTGAACGTAGACAGAGAGAATGTGGCCGGGCATTACAGATGGCTTGGCTTTGAGCATGGACTCTAGAACATTCTGCTGGTTGCGGACATGTCTGAAAATGAACTTTCTATGTTTATCTGCTCTGATCCTTGAATTTTTTGACTCGAATAATCGATAATTTGACGCAATTTGGCATGAATAAAGCTTCCATTTTGGTCGGTGCTAAATTTTCGACCTAGCCGACCGACCGCCGACCAATTTAAAAAAAAATCGATAATTTTCAAAATTCAAAAATTTGGAAAATTGGAATATTCCGGAATCTCAAAAAATTTGAAAAATGGCTTAACATGACCCTGGTGTGTTTTCTAGGCCATTTTGGCGTGGTGGCCTAACTATTGCAAGTTTGGTTTTCTCGGCCACCAGTTTTTTTGGCCTAGAAATAGGCTAGTATGACCCGTGCGTGTTTTAGGTCATTTTTACTTGGTGGCCTAACTTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCATTAGGTTGTCTAGACTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTATCGATTATTCGAGTCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAGCATTAGGTTGTCTAGACTGTCGATTTGATCCCAATCGTCTTCTTCCTCGGCTTGCGACATTAGGGAGCAGTAGAGTTTTCCGATGTTCTGAACGTAGACAGAGAGAATGTGGCCGGGCATTACAGATGGCTTGGCTTTGAGCATGGACTCTAGAACATTCTGCTGGTTGCGGACATGTCTGAAAATGAACTTTCTATGTTTATCTGCTCTGATCCTTGAATTTTTTGACTCGAATAATCGATAAT</canonical_amplicon>
		<polymorphic_amplicon>GAGCATTAGGTTGTCTAGACTGTCGATTTGATCCCAATCGTCTTCTTCCTCGGCTTGCGACATTAGSGAGCAGTAGAGTTTTCCGATGTTCTGAACGTAGACAGAGAGAATGTGGCCGGGCATTACAGATGGCTTGGCTTTGAGCATGGACTCTAGAACATTCTGCTGGTTGCGGACATGTCTGAAAATGAACTTTCTATGTTTATCTGCTCTGATCCTTGAATTTTTTGACTCGAATAATCGATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12660</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>54387</contig_pos>
        <strand>+</strand>
        <context>TTGAGTGATA[C/T]AATTCTCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGCAAGTTCCGAGACGGGAGAAAAAATCTACAGTACCTTGAGTGATA</left_flank>
        <right_flank>AATTCTCAAAAGTGCCATTGCAACTGTCATCCACATGACCATAAAACGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACTCATGGCAAACTGAAAAGAAAAGACATTTCTGAAGTAAAATTGCTTAAAACCTGTATTAGAAGAGCCCCTTTAATAGAAGGGCCTCTTTAAAATGTGTTAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAATTCAAAATTCAAAAATTCGAAAATTCAAATTTCAAAATTTCAAAATTTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAGTTCAAAAATTCAAAAATTCCAAAATTCAAAAATTCAAAAATTCAAAAATCCAAAAATTCGAAAATTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCTGATATAGTGGCCTGACTTTTGCAAGTTCCGAGACGGGAGAAAAAATCTACAGTACCTTGAGTGATATAATTCTCAAAAGTGCCATTGCAACTGTCATCCACATGACCATAAAACGAGAAAATATTGTGAAGAGATTTGTAAATATTGAAGCAATACCAAATTCATAATAATGTAAGCCCGAACAATAATCATCGTCGTTATATTCAAGAATATACAAGATATCAGCAGCGAGAAGAGAAAATAATAGAATTAAATCGAAAAATGCAATCATTGCCATTATCAAAAAAACGGAATTCGATTTTAGCGATTTTTGTGTCAAAATCGATAAATGAATTGAATTTGTGATTAGGCCAAAAATCGATACAATTATATTCGCATATCGAGCGATTAGGTCGAAAAAGAATGAGAATTCGGCTTGCTCAGTAACTTGAATTAATTCTTGTTTTGTTAACTTCATTATTTTTTTTTTGGAAAAAAACTGAATTGGAAAAAATTGAGTTTCAATTTTTGAAAATTATTTTTTCGGATCTTTGGGTTTTTAGAAAATTGGGGGGAAAATAAAATAGG</canonical>
            <polymorphic>GAACTCATGGCAAACTGAAAAGAAAAGACATTTCTGAAGTAAAATTGCTTAAAACCTGTATTAGAAGAGCCCCTTTAATAGAAGGGCCTCTTTAAAATGTGTTAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAATTCAAAATTCAAAAATTCGAAAATTCAAATTTCAAAATTTCAAAATTTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAGTTCAAAAATTCAAAAATTCCAAAATTCAAAAATTCAAAAATTCAAAAATCCAAAAATTCGAAAATTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCTGATATAGTGGCCTGACTTTTGCAAGTTCCGAGACGGGAGAAAAAATCTACAGTACCTTGAGTGATAYAATTCTCAAAAGTGCCATTGCAACTGTCATCCACATGACCATAAAACGAGAAAATATTGTGAAGAGATTTGTAAATATTGAAGCAATACCAAATTCATAATAATGTAAGCCCGAACAATAATCATCGTCGTTATATTCAAGAATATACAAGATATCAGCAGCGAGAAGAGAAAATAATAGAATTAAATCGAAAAATGCAATCATTGCCATTATCAAAAAAACGGAATTCGATTTTAGCGATTTTTGTGTCAAAATCGATAAATGAATTGAATTTGTGATTAGGCCAAAAATCGATACAATTATATTCGCATATCGAGCGATTAGGTCGAAAAAGAATGAGAATTCGGCTTGCTCAGTAACTTGAATTAATTCTTGTTTTGTTAACTTCATTATTTTTTTTTTGGAAAAAAACTGAATTGGAAAAAATTGAGTTTCAATTTTTGAAAATTATTTTTTCGGATCTTTGGGTTTTTAGAAAATTGGGGGGAAAATAAAATAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAAAATTCAAAAATTCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CACAATATTTTCTCGTTTTATGG</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CGAAAATTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCTGATATAGTGGCCTGACTTTTGCAAGTTCCGAGACGGGAGAAAAAATCTACAGTACCTTGAGTGATATAATTCTCAAAAGTGCCATTGCAACTGTCATCCACATGACCATAAAACGAGAAAATATTGTG</canonical_amplicon>
		<polymorphic_amplicon>CGAAAATTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCTGATATAGTGGCCTGACTTTTGCAAGTTCCGAGACGGGAGAAAAAATCTACAGTACCTTGAGTGATAYAATTCTCAAAAGTGCCATTGCAACTGTCATCCACATGACCATAAAACGAGAAAATATTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12661</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>54458</contig_pos>
        <strand>+</strand>
        <context>GAAGAGATTT[A/G]TAAATATTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAACTGTCATCCACATGACCATAAAACGAGAAAATATTGTGAAGAGATTT</left_flank>
        <right_flank>TAAATATTGAAGCAATACCAAATTCATAATAATGTAAGCCCGAACAATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTTAATAGAAGGGCCTCTTTAAAATGTGTTAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAATTCAAAATTCAAAAATTCGAAAATTCAAATTTCAAAATTTCAAAATTTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAGTTCAAAAATTCAAAAATTCCAAAATTCAAAAATTCAAAAATTCAAAAATCCAAAAATTCGAAAATTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCTGATATAGTGGCCTGACTTTTGCAAGTTCCGAGACGGGAGAAAAAATCTACAGTACCTTGAGTGATATAATTCTCAAAAGTGCCATTGCAACTGTCATCCACATGACCATAAAACGAGAAAATATTGTGAAGAGATTTGTAAATATTGAAGCAATACCAAATTCATAATAATGTAAGCCCGAACAATAATCATCGTCGTTATATTCAAGAATATACAAGATATCAGCAGCGAGAAGAGAAAATAATAGAATTAAATCGAAAAATGCAATCATTGCCATTATCAAAAAAACGGAATTCGATTTTAGCGATTTTTGTGTCAAAATCGATAAATGAATTGAATTTGTGATTAGGCCAAAAATCGATACAATTATATTCGCATATCGAGCGATTAGGTCGAAAAAGAATGAGAATTCGGCTTGCTCAGTAACTTGAATTAATTCTTGTTTTGTTAACTTCATTATTTTTTTTTTGGAAAAAAACTGAATTGGAAAAAATTGAGTTTCAATTTTTGAAAATTATTTTTTCGGATCTTTGGGTTTTTAGAAAATTGGGGGGAAAATAAAATAGGTGTTAGAAAATTGGAAATATTGGAAAACCTATGATTAGAATTTCGGCCAACGCCCACAATAAGGTTTATTC</canonical>
            <polymorphic>CCTTTAATAGAAGGGCCTCTTTAAAATGTGTTAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAATTCAAAATTCAAAAATTCGAAAATTCAAATTTCAAAATTTCAAAATTTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAGTTCAAAAATTCAAAAATTCCAAAATTCAAAAATTCAAAAATTCAAAAATCCAAAAATTCGAAAATTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCTGATATAGTGGCCTGACTTTTGCAAGTTCCGAGACGGGAGAAAAAATCTACAGTACCTTGAGTGATATAATTCTCAAAAGTGCCATTGCAACTGTCATCCACATGACCATAAAACGAGAAAATATTGTGAAGAGATTTRTAAATATTGAAGCAATACCAAATTCATAATAATGTAAGCCCGAACAATAATCATCGTCGTTATATTCAAGAATATACAAGATATCAGCAGCGAGAAGAGAAAATAATAGAATTAAATCGAAAAATGCAATCATTGCCATTATCAAAAAAACGGAATTCGATTTTAGCGATTTTTGTGTCAAAATCGATAAATGAATTGAATTTGTGATTAGGCCAAAAATCGATACAATTATATTCGCATATCGAGCGATTAGGTCGAAAAAGAATGAGAATTCGGCTTGCTCAGTAACTTGAATTAATTCTTGTTTTGTTAACTTCATTATTTTTTTTTTGGAAAAAAACTGAATTGGAAAAAATTGAGTTTCAATTTTTGAAAATTATTTTTTCGGATCTTTGGGTTTTTAGAAAATTGGGGGGAAAATAAAATAGGTGTTAGAAAATTGGAAATATTGGAAAACCTATGATTAGAATTTCGGCCAACGCCCACAATAAGGTTTATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGCAACTGTCATCCACAT</pcr_primer_p1>
		<pcr_primer_p2>AATTCATTTATCGATTTTGACAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTGCAACTGTCATCCACATGACCATAAAACGAGAAAATATTGTGAAGAGATTTGTAAATATTGAAGCAATACCAAATTCATAATAATGTAAGCCCGAACAATAATCATCGTCGTTATATTCAAGAATATACAAGATATCAGCAGCGAGAAGAGAAAATAATAGAATTAAATCGAAAAATGCAATCATTGCCATTATCAAAAAAACGGAATTCGATTTTAGCGATTTTTGTGTCAAAATCGATAAATGAATT</canonical_amplicon>
		<polymorphic_amplicon>ATTGCAACTGTCATCCACATGACCATAAAACGAGAAAATATTGTGAAGAGATTTRTAAATATTGAAGCAATACCAAATTCATAATAATGTAAGCCCGAACAATAATCATCGTCGTTATATTCAAGAATATACAAGATATCAGCAGCGAGAAGAGAAAATAATAGAATTAAATCGAAAAATGCAATCATTGCCATTATCAAAAAAACGGAATTCGATTTTAGCGATTTTTGTGTCAAAATCGATAAATGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12662</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>54500</contig_pos>
        <strand>+</strand>
        <context>ATGYAAGCCC[A/G]AACAATAATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAGATTTGTAAATATTGAAGCAATACCAAATTCATAATAATGTAAGCCC</left_flank>
        <right_flank>AACAATAATCATCGTCGTTATATTCAAGAATATACAAGATATCAGCAGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAATTCAAAATTCAAAAATTCGAAAATTCAAATTTCAAAATTTCAAAATTTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAGTTCAAAAATTCAAAAATTCCAAAATTCAAAAATTCAAAAATTCAAAAATCCAAAAATTCGAAAATTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCTGATATAGTGGCCTGACTTTTGCAAGTTCCGAGACGGGAGAAAAAATCTACAGTACCTTGAGTGATATAATTCTCAAAAGTGCCATTGCAACTGTCATCCACATGACCATAAAACGAGAAAATATTGTGAAGAGATTTGTAAATATTGAAGCAATACCAAATTCATAATAATGTAAGCCCGAACAATAATCATCGTCGTTATATTCAAGAATATACAAGATATCAGCAGCGAGAAGAGAAAATAATAGAATTAAATCGAAAAATGCAATCATTGCCATTATCAAAAAAACGGAATTCGATTTTAGCGATTTTTGTGTCAAAATCGATAAATGAATTGAATTTGTGATTAGGCCAAAAATCGATACAATTATATTCGCATATCGAGCGATTAGGTCGAAAAAGAATGAGAATTCGGCTTGCTCAGTAACTTGAATTAATTCTTGTTTTGTTAACTTCATTATTTTTTTTTTGGAAAAAAACTGAATTGGAAAAAATTGAGTTTCAATTTTTGAAAATTATTTTTTCGGATCTTTGGGTTTTTAGAAAATTGGGGGGAAAATAAAATAGGTGTTAGAAAATTGGAAATATTGGAAAACCTATGATTAGAATTTCGGCCAACGCCCACAATAAGGTTTATTCATAATTTGAGGCTTTGGAAAAGAAAATCACATCACTTTATTT</canonical>
            <polymorphic>ATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAATTCAAAATTCAAAAATTCGAAAATTCAAATTTCAAAATTTCAAAATTTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAGTTCAAAAATTCAAAAATTCCAAAATTCAAAAATTCAAAAATTCAAAAATCCAAAAATTCGAAAATTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCTGATATAGTGGCCTGACTTTTGCAAGTTCCGAGACGGGAGAAAAAATCTACAGTACCTTGAGTGATATAATTCTCAAAAGTGCCATTGCAACTGTCATCCACATGACCATAAAACGAGAAAATATTGTGAAGAGATTTGTAAATATTGAAGCAATACCAAATTCATAATAATGTAAGCCCRAACAATAATCATCGTCGTTATATTCAAGAATATACAAGATATCAGCAGCGAGAAGAGAAAATAATAGAATTAAATCGAAAAATGCAATCATTGCCATTATCAAAAAAACGGAATTCGATTTTAGCGATTTTTGTGTCAAAATCGATAAATGAATTGAATTTGTGATTAGGCCAAAAATCGATACAATTATATTCGCATATCGAGCGATTAGGTCGAAAAAGAATGAGAATTCGGCTTGCTCAGTAACTTGAATTAATTCTTGTTTTGTTAACTTCATTATTTTTTTTTTGGAAAAAAACTGAATTGGAAAAAATTGAGTTTCAATTTTTGAAAATTATTTTTTCGGATCTTTGGGTTTTTAGAAAATTGGGGGGAAAATAAAATAGGTGTTAGAAAATTGGAAATATTGGAAAACCTATGATTAGAATTTCGGCCAACGCCCACAATAAGGTTTATTCATAATTTGAGGCTTTGGAAAAGAAAATCACATCACTTTATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTGTCATCCACATGACCATA</pcr_primer_p1>
		<pcr_primer_p2>ATTCAATTCATTTATCGATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTGTCATCCACATGACCATAAAACGAGAAAATATTGTGAAGAGATTTGTAAATATTGAAGCAATACCAAATTCATAATAATGTAAGCCCGAACAATAATCATCGTCGTTATATTCAAGAATATACAAGATATCAGCAGCGAGAAGAGAAAATAATAGAATTAAATCGAAAAATGCAATCATTGCCATTATCAAAAAAACGGAATTCGATTTTAGCGATTTTTGTGTCAAAATCGATAAATGAATTGAAT</canonical_amplicon>
		<polymorphic_amplicon>ACTGTCATCCACATGACCATAAAACGAGAAAATATTGTGAAGAGATTTGTAAATATTGAAGCAATACCAAATTCATAATAATGTAAGCCCRAACAATAATCATCGTCGTTATATTCAAGAATATACAAGATATCAGCAGCGAGAAGAGAAAATAATAGAATTAAATCGAAAAATGCAATCATTGCCATTATCAAAAAAACGGAATTCGATTTTAGCGATTTTTGTGTCAAAATCGATAAATGAATTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12663</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>54534</contig_pos>
        <strand>+</strand>
        <context>TCAAGAATAT[A/G]CAAGATATCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAATAATGTAAGCCCGAACAATAATCATCGTCGTTATATTCAAGAATAT</left_flank>
        <right_flank>CAAGATATCAGCAGCGAGAAGAGAAAATAATAGAATTAAATCGAAAAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAAATTCAAAAATTCAAAAATTCAAAATTCAAAATTCAAAAATTCGAAAATTCAAATTTCAAAATTTCAAAATTTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAGTTCAAAAATTCAAAAATTCCAAAATTCAAAAATTCAAAAATTCAAAAATCCAAAAATTCGAAAATTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCTGATATAGTGGCCTGACTTTTGCAAGTTCCGAGACGGGAGAAAAAATCTACAGTACCTTGAGTGATATAATTCTCAAAAGTGCCATTGCAACTGTCATCCACATGACCATAAAACGAGAAAATATTGTGAAGAGATTTGTAAATATTGAAGCAATACCAAATTCATAATAATGTAAGCCCGAACAATAATCATCGTCGTTATATTCAAGAATATACAAGATATCAGCAGCGAGAAGAGAAAATAATAGAATTAAATCGAAAAATGCAATCATTGCCATTATCAAAAAAACGGAATTCGATTTTAGCGATTTTTGTGTCAAAATCGATAAATGAATTGAATTTGTGATTAGGCCAAAAATCGATACAATTATATTCGCATATCGAGCGATTAGGTCGAAAAAGAATGAGAATTCGGCTTGCTCAGTAACTTGAATTAATTCTTGTTTTGTTAACTTCATTATTTTTTTTTTGGAAAAAAACTGAATTGGAAAAAATTGAGTTTCAATTTTTGAAAATTATTTTTTCGGATCTTTGGGTTTTTAGAAAATTGGGGGGAAAATAAAATAGGTGTTAGAAAATTGGAAATATTGGAAAACCTATGATTAGAATTTCGGCCAACGCCCACAATAAGGTTTATTCATAATTTGAGGCTTTGGAAAAGAAAATCACATCACTTTATTTGTTTTCAGAAAAACTCAAACAATTATTTCATATT</canonical>
            <polymorphic>TCAAAAATTCAAAAATTCAAAAATTCAAAATTCAAAATTCAAAAATTCGAAAATTCAAATTTCAAAATTTCAAAATTTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAGTTCAAAAATTCAAAAATTCCAAAATTCAAAAATTCAAAAATTCAAAAATCCAAAAATTCGAAAATTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCTGATATAGTGGCCTGACTTTTGCAAGTTCCGAGACGGGAGAAAAAATCTACAGTACCTTGAGTGATATAATTCTCAAAAGTGCCATTGCAACTGTCATCCACATGACCATAAAACGAGAAAATATTGTGAAGAGATTTGTAAATATTGAAGCAATACCAAATTCATAATAATGTAAGCCCGAACAATAATCATCGTCGTTATATTCAAGAATATRCAAGATATCAGCAGCGAGAAGAGAAAATAATAGAATTAAATCGAAAAATGCAATCATTGCCATTATCAAAAAAACGGAATTCGATTTTAGCGATTTTTGTGTCAAAATCGATAAATGAATTGAATTTGTGATTAGGCCAAAAATCGATACAATTATATTCGCATATCGAGCGATTAGGTCGAAAAAGAATGAGAATTCGGCTTGCTCAGTAACTTGAATTAATTCTTGTTTTGTTAACTTCATTATTTTTTTTTTGGAAAAAAACTGAATTGGAAAAAATTGAGTTTCAATTTTTGAAAATTATTTTTTCGGATCTTTGGGTTTTTAGAAAATTGGGGGGAAAATAAAATAGGTGTTAGAAAATTGGAAATATTGGAAAACCTATGATTAGAATTTCGGCCAACGCCCACAATAAGGTTTATTCATAATTTGAGGCTTTGGAAAAGAAAATCACATCACTTTATTTGTTTTCAGAAAAACTCAAACAATTATTTCATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTGTCATCCACATGACCATA</pcr_primer_p1>
		<pcr_primer_p2>ATTCAATTCATTTATCGATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTGTCATCCACATGACCATAAAACGAGAAAATATTGTGAAGAGATTTGTAAATATTGAAGCAATACCAAATTCATAATAATGTAAGCCCGAACAATAATCATCGTCGTTATATTCAAGAATATACAAGATATCAGCAGCGAGAAGAGAAAATAATAGAATTAAATCGAAAAATGCAATCATTGCCATTATCAAAAAAACGGAATTCGATTTTAGCGATTTTTGTGTCAAAATCGATAAATGAATTGAAT</canonical_amplicon>
		<polymorphic_amplicon>ACTGTCATCCACATGACCATAAAACGAGAAAATATTGTGAAGAGATTTGTAAATATTGAAGCAATACCAAATTCATAATAATGTAAGCCCGAACAATAATCATCGTCGTTATATTCAAGAATATRCAAGATATCAGCAGCGAGAAGAGAAAATAATAGAATTAAATCGAAAAATGCAATCATTGCCATTATCAAAAAAACGGAATTCGATTTTAGCGATTTTTGTGTCAAAATCGATAAATGAATTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12664</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>56177</contig_pos>
        <strand>+</strand>
        <context>TACGAACAAS[A/T]CCCGTTTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAAATATTCTCCATTTTTCAATTTTGATCAAAAAATCATTACGAACAAG</left_flank>
        <right_flank>CCCGTTTTTATATTTATGGCTGTGATTTCAATTTGTGATATTTTCCAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGTTTTTTTTTCTAGAAATTTGACAATTTTTGTTGCCAGTTTTTCATTCATTCTCAATTTTTCTGCATGCTATCTCAAGTACAGTATCGAAAATTTTTAATTTTTCAGGTTCCCAAAATGTATTCAGAAGCAGCTCTTCCTTATTTAAATTTTGACTATAATTCCCGTTTTCTTACTGTAGTTTTATCAATTTTCGGAATAATTTCAAATATTCTCCATTTTTCAATTTTGATCAAAAAATCATTACGAACAAGTCCCGTTTTTATATTTATGGCTGTGATTTCAATTTGTGATATTTTCCAATTATCAATTCAAATTTTCAATGATATTTCCCATTTAATCAATTTCAAAAATCCTCATTTTTGTCTTGGATATTATACTTATTGGGGTACTGTACTCCAATTGCTCATCCTATTTTTCTCCTCCTTTTTCATTTCAATTTCCAATTGGTTGGCAGTTTTAATGGCATTTTTCCGGGGTTTATCCATTAAATATGCGACAAGCTCTCGATCGGAAACTCTATCAAATCCAAGTTTCGCTAGAAATTTGACAATTTTTGTTGCCAGTTTTTCATTCATTCTCAGTTTTTCTGCATGCTATTTCAAGTACAGTATCGAAAATTTTTAATTTTTCAGGTTCCCAAAATGTATTCAGAAGAAGCTCTTCCATATTTAAACTCTGACTATTATTCCCGTTTTCTTACTGTAGTTTTATCAATTTTCGGAATAATTTCGAATATTCTCCATTTTTCAATT</canonical>
            <polymorphic>ATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGTTTTTTTTTCTAGAAATTTGACAATTTTTGTTGCCAGTTTTTCATTCATTCTCAATTTTTCTGCATGCTATCTCAAGTACAGTATCGAAAATTTTTAATTTTTCAGGTTCCCAAAATGTATTCAGAAGCAGCTCTTCCTTATTTAAATTTTGACTATAATTCCCGTTTTCTTACTGTAGTTTTATCAATTTTCGGAATAATTTCAAATATTCTCCATTTTTCAATTTTGATCAAAAAATCATTACGAACAAGWCCCGTTTTTATATTTATGGCTGTGATTTCAATTTGTGATATTTTCCAATTATCAATTCAAATTTTCAATGATATTTCCCATTTAATCAATTTCAAAAATCCTCATTTTTGTCTTGGATATTATACTTATTGGGGTACTGTACTCCAATTGCTCATCCTATTTTTCTCCTCCTTTTTCATTTCAATTTCCAATTGGTTGGCAGTTTTAATGGCATTTTTCCGGGGTTTATCCATTAAATATGCGACAAGCTCTCGATCGGAAACTCTATCAAATCCAAGTTTCGCTAGAAATTTGACAATTTTTGTTGCCAGTTTTTCATTCATTCTCAGTTTTTCTGCATGCTATTTCAAGTACAGTATCGAAAATTTTTAATTTTTCAGGTTCCCAAAATGTATTCAGAAGAAGCTCTTCCATATTTAAACTCTGACTATTATTCCCGTTTTCTTACTGTAGTTTTATCAATTTTCGGAATAATTTCGAATATTCTCCATTTTTCAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTTTAATTTTTCAGGTTCC</pcr_primer_p1>
		<pcr_primer_p2>TAAATGGGAAATATCATTGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATTTTTAATTTTTCAGGTTCCCAAAATGTATTCAGAAGCAGCTCTTCCTTATTTAAATTTTGACTATAATTCCCGTTTTCTTACTGTAGTTTTATCAATTTTCGGAATAATTTCAAATATTCTCCATTTTTCAATTTTGATCAAAAAATCATTACGAACAAGTCCCGTTTTTATATTTATGGCTGTGATTTCAATTTGTGATATTTTCCAATTATCAATTCAAATTTTCAATGATATTTCCCATTTA</canonical_amplicon>
		<polymorphic_amplicon>AAATTTTTAATTTTTCAGGTTCCCAAAATGTATTCAGAAGCAGCTCTTCCTTATTTAAATTTTGACTATAATTCCCGTTTTCTTACTGTAGTTTTATCAATTTTCGGAATAATTTCAAATATTCTCCATTTTTCAATTTTGATCAAAAAATCATTACGAACAAGWCCCGTTTTTATATTTATGGCTGTGATTTCAATTTGTGATATTTTCCAATTATCAATTCAAATTTTCAATGATATTTCCCATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12665</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>56176</contig_pos>
        <strand>+</strand>
        <context>TTACGAACAA[C/G]WCCCGTTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCAAATATTCTCCATTTTTCAATTTTGATCAAAAAATCATTACGAACAA</left_flank>
        <right_flank>TCCCGTTTTTATATTTATGGCTGTGATTTCAATTTGTGATATTTTCCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGTTTTTTTTTCTAGAAATTTGACAATTTTTGTTGCCAGTTTTTCATTCATTCTCAATTTTTCTGCATGCTATCTCAAGTACAGTATCGAAAATTTTTAATTTTTCAGGTTCCCAAAATGTATTCAGAAGCAGCTCTTCCTTATTTAAATTTTGACTATAATTCCCGTTTTCTTACTGTAGTTTTATCAATTTTCGGAATAATTTCAAATATTCTCCATTTTTCAATTTTGATCAAAAAATCATTACGAACAAGTCCCGTTTTTATATTTATGGCTGTGATTTCAATTTGTGATATTTTCCAATTATCAATTCAAATTTTCAATGATATTTCCCATTTAATCAATTTCAAAAATCCTCATTTTTGTCTTGGATATTATACTTATTGGGGTACTGTACTCCAATTGCTCATCCTATTTTTCTCCTCCTTTTTCATTTCAATTTCCAATTGGTTGGCAGTTTTAATGGCATTTTTCCGGGGTTTATCCATTAAATATGCGACAAGCTCTCGATCGGAAACTCTATCAAATCCAAGTTTCGCTAGAAATTTGACAATTTTTGTTGCCAGTTTTTCATTCATTCTCAGTTTTTCTGCATGCTATTTCAAGTACAGTATCGAAAATTTTTAATTTTTCAGGTTCCCAAAATGTATTCAGAAGAAGCTCTTCCATATTTAAACTCTGACTATTATTCCCGTTTTCTTACTGTAGTTTTATCAATTTTCGGAATAATTTCGAATATTCTCCATTTTTCAAT</canonical>
            <polymorphic>AATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGTTTTTTTTTCTAGAAATTTGACAATTTTTGTTGCCAGTTTTTCATTCATTCTCAATTTTTCTGCATGCTATCTCAAGTACAGTATCGAAAATTTTTAATTTTTCAGGTTCCCAAAATGTATTCAGAAGCAGCTCTTCCTTATTTAAATTTTGACTATAATTCCCGTTTTCTTACTGTAGTTTTATCAATTTTCGGAATAATTTCAAATATTCTCCATTTTTCAATTTTGATCAAAAAATCATTACGAACAASTCCCGTTTTTATATTTATGGCTGTGATTTCAATTTGTGATATTTTCCAATTATCAATTCAAATTTTCAATGATATTTCCCATTTAATCAATTTCAAAAATCCTCATTTTTGTCTTGGATATTATACTTATTGGGGTACTGTACTCCAATTGCTCATCCTATTTTTCTCCTCCTTTTTCATTTCAATTTCCAATTGGTTGGCAGTTTTAATGGCATTTTTCCGGGGTTTATCCATTAAATATGCGACAAGCTCTCGATCGGAAACTCTATCAAATCCAAGTTTCGCTAGAAATTTGACAATTTTTGTTGCCAGTTTTTCATTCATTCTCAGTTTTTCTGCATGCTATTTCAAGTACAGTATCGAAAATTTTTAATTTTTCAGGTTCCCAAAATGTATTCAGAAGAAGCTCTTCCATATTTAAACTCTGACTATTATTCCCGTTTTCTTACTGTAGTTTTATCAATTTTCGGAATAATTTCGAATATTCTCCATTTTTCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTTTAATTTTTCAGGTTCC</pcr_primer_p1>
		<pcr_primer_p2>TAAATGGGAAATATCATTGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATTTTTAATTTTTCAGGTTCCCAAAATGTATTCAGAAGCAGCTCTTCCTTATTTAAATTTTGACTATAATTCCCGTTTTCTTACTGTAGTTTTATCAATTTTCGGAATAATTTCAAATATTCTCCATTTTTCAATTTTGATCAAAAAATCATTACGAACAAGTCCCGTTTTTATATTTATGGCTGTGATTTCAATTTGTGATATTTTCCAATTATCAATTCAAATTTTCAATGATATTTCCCATTTA</canonical_amplicon>
		<polymorphic_amplicon>AAATTTTTAATTTTTCAGGTTCCCAAAATGTATTCAGAAGCAGCTCTTCCTTATTTAAATTTTGACTATAATTCCCGTTTTCTTACTGTAGTTTTATCAATTTTCGGAATAATTTCAAATATTCTCCATTTTTCAATTTTGATCAAAAAATCATTACGAACAASTCCCGTTTTTATATTTATGGCTGTGATTTCAATTTGTGATATTTTCCAATTATCAATTCAAATTTTCAATGATATTTCCCATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12666</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>123797</contig_pos>
        <strand></strand>
        <context>TCCAAAATTC[A/G]AAAAAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATGAAAACGAACCAAGTTATGGTCAAAAAACCAAAATGTTCCAAAATTC</left_flank>
        <right_flank>AAAAAAAAATTTTTGGAATTTTTCAAAAAAATTCCCCAAATTTGGTCATA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTGGGTCGTTTACAGCCGATTTTCAAAATTTTTCTCGACAAAAATGTATAATTTACGTTTTCCATTATTCCGACACTGTCCACAGGATAAAGCACAGTTATCTGCGAAAAATGGGGAAATTGGACGAGTCCAGTGGCACCGCTCCTCGGATTTCCAGCGAGCGCAACTTTTGTACACATCTTGGCATGGTCCTGAAATTTTGAAAAAAATATTTTTGTATTAATTTTAACAAGGACATTACGCTGATTCTAAAAAAGCCGAAATTTTGAAAATCGGATAAAAATGAAACAAGCTATGGTCCAAATACAAAAATGATCCAAATTTTCGGAAAAAAAATTGTTTTTTGGAATTTTTCAAAAATTCTAAATTACGAAATTGTGTCAGTTTTAGATGCATTTTGTTAAACAAAACTCGCTTATTCAGAAAAACAGACATTTTCAAAAATCGGATGAAAACGAACCAAGTTATGGTCAAAAAACCAAAATGTTCCAAAATTCAAAAAAAAAATTTTTGGAATTTTTCAAAAAAATTCCCCAAATTTGGTCATATTTATATCCATTTTGATCATTTTTAAATTTCTGATTCAGAAATCATATTATTTTCTGAATCTGACAAGACTAGAATGAGTTATAGACCAAAAATTTGAAAAAAAAAAATTATTTTAATAAATTTTCCAACCCGTATAACTCTATCAATTTTCATCCGTTTTTTTGGATTTTAGTATCAAAATGTCCCAAATATTTCGAACTATTCAAGATTCTAAAATTTTCCTCAAAAGAAATTGACCTACTTTGACACATTCTGCCCATAAACCCATTTGGGCACTCGCATCGATTTCCAAGCGAAAGCTCAACACATTTTCCACCAATTCCACACGATCTTGGCTCCGTTGGAGAGCAGAAATCGATTACTGTAATTTTCAGAGATTTAACGAGAATTTGAATTGCTTGAATTTCAAAAAACAATTTTTTTCAAAATCCACTCACTTGTCTTGGACA</canonical>
            <polymorphic>ACTTGGGTCGTTTACAGCCGATTTTCAAAATTTTTCTCGACAAAAATGTATAATTTACGTTTTCCATTATTCCGACACTGTCCACAGGATAAAGCACAGTTATCTGCGAAAAATGGGGAAATTGGACGAGTCCAGTGGCACCGCTCCTCGGATTTCCAGCGAGCGCAACTTTTGTACACATCTTGGCATGGTCCTGAAATTTTGAAAAAAATATTTTTGTATTAATTTTAACAAGGACATTACGCTGATTCTAAAAAAGCCGAAATTTTGAAAATCGGATAAAAATGAAACAAGCTATGGTCCAAATACAAAAATGATCCAAATTTTCGGAAAAAAAATTGTTTTTTGGAATTTTTCAAAAATTCTAAATTACGAAATTGTGTCAGTTTTAGATGCATTTTGTTAAACAAAACTCGCTTATTCAGAAAAACAGACATTTTCAAAAATCGGATGAAAACGAACCAAGTTATGGTCAAAAAACCAAAATGTTCCAAAATTCRAAAAAAAAATTTTTGGAATTTTTCAAAAAAATTCCCCAAATTTGGTCATATTTATATCCATTTTGATCATTTTTAAATTTCTGATTCAGAAATCATATTATTTTCTGAATCTGACAAGACTAGAATGAGTTATAGACCAAAAATTTGAAAAAAAAAAATTATTTTAATAAATTTTCCAACCCGTATAACTCTATCAATTTTCATCCGTTTTTTTGGATTTTAGTATCAAAATGTCCCAAATATTTCGAACTATTCAAGATTCTAAAATTTTCCTCAAAAGAAATTGACCTACTTTGACACATTCTGCCCATAAACCCATTTGGGCACTCGCATCGATTTCCAAGCGAAAGCTCAACACATTTTCCACCAATTCCACACGATCTTGGCTCCGTTGGAGAGCAGAAATCGATTACTGTAATTTTCAGAGATTTAACGAGAATTTGAATTGCTTGAATTTCAAAAAACAATTTTTTTCAAAATCCACTCACTTGTCTTGGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAGTTTTAGATGCATTTTGTT</pcr_primer_p1>
		<pcr_primer_p2>CTCATTCTAGTCTTGTCAGATTCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTCAGTTTTAGATGCATTTTGTTAAACAAAACTCGCTTATTCAGAAAAACAGACATTTTCAAAAATCGGATGAAAACGAACCAAGTTATGGTCAAAAAACCAAAATGTTCCAAAATTCAAAAAAAAAATTTTTGGAATTTTTCAAAAAAATTCCCCAAATTTGGTCATATTTATATCCATTTTGATCATTTTTAAATTTCTGATTCAGAAATCATATTATTTTCTGAATCTGACAAGACTAGAATGAG</canonical_amplicon>
		<polymorphic_amplicon>GTCAGTTTTAGATGCATTTTGTTAAACAAAACTCGCTTATTCAGAAAAACAGACATTTTCAAAAATCGGATGAAAACGAACCAAGTTATGGTCAAAAAACCAAAATGTTCCAAAATTCRAAAAAAAAATTTTTGGAATTTTTCAAAAAAATTCCCCAAATTTGGTCATATTTATATCCATTTTGATCATTTTTAAATTTCTGATTCAGAAATCATATTATTTTCTGAATCTGACAAGACTAGAATGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12727</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>126086</contig_pos>
        <strand>+</strand>
        <context>taattGGTCT[A/G]TAACTTGCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACGAAATTTCGAAACTTTTTGGAAAATGCGCTCTATTGATAATTGGTCT</left_flank>
        <right_flank>TAACTTGCCAAAAACTGATCATCAAGAACTAAAACTGCTCAAAATCGAGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGAGAGAGGGGGAGGGGGGAATTAAAAAATCCAAAATTTCCCTAAAACCAATAAAACCAAGACAGAAAAAGAAGAGAAATTTGAAGGTCGTTTTCTCAAAAAGACCAGTATAATAGATGCAACACACAACTACTTGATAAATCGAGGAAGTTACAAGAAAAGAGAAAAAAGTGGGCGGAGCCTAAAATTAATTGTAATGTTACACAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAGGAACTGCAAGTTTTAGTTACCTGGTGGAACCGCAGAAAATCAAGGAAATAAGACAGAAAACGACAAAATTTGGAGAAATGCGCTCAATTGATAATTGGGCTATAATTGGTCTTAATTGGCCTATAGTTAGGTTTAGAACCTCTTGAAACAAAATTTTGACGCTGAAAATGAGTTCTCCGCCTTCAAATTAGCTGAAAATCACAAAAAAAAACGAAATTTCGAAACTTTTTGGAAAATGCGCTCTATTGATAATTGGTCTATAACTTGCCAAAAACTGATCATCAAGAACTAAAACTGCTCAAAATCGAGTTCCCCACCTAAATCTAGTCTGAAAACATTTAAAAAATTTTTTTTCAAAAAATTTGCAGATGTGCTCTTTTGATAATTGGCCTAAAATTGTCTCCGGGACTGCATGAAACCAACTTTCGAGCTTGAACATGAGTTTAATGCCAAAAACTGGTCCGGAAACCTTTAAAAAAATTGAAAAACAATTTTTTCAAAATTTTAGCAAATGCGCTCCAATGCAAATCTCTCCAAAACAAGGCTTAATTTTATTTTAAATAGTTTAAACTTCTCAAAATCGCATTCCCCATCAAAAACTAGCCCGAAAACCTCTAAAAACACAGTTTTCAAACTTTGAGCAAATGCGCTCCAATGCAAATCTCTCGAAAACGAGGCTTAAACTAATTTTAAATCTCTCAAACTGCTCAAAATCGAATTTCCCACTAAAAACTAGCCCTAAACCCGTCAAAAAACACAA</canonical>
            <polymorphic>AGAGAGAGAGGGGGAGGGGGGAATTAAAAAATCCAAAATTTCCCTAAAACCAATAAAACCAAGACAGAAAAAGAAGAGAAATTTGAAGGTCGTTTTCTCAAAAAGACCAGTATAATAGATGCAACACACAACTACTTGATAAATCGAGGAAGTTACAAGAAAAGAGAAAAAAGTGGGCGGAGCCTAAAATTAATTGTAATGTTACACAAGAAGAAGAAGAAGAAGAAGAAGAAAAAGAAGGAACTGCAAGTTTTAGTTACCTGGTGGAACCGCAGAAAATCAAGGAAATAAGACAGAAAACGACAAAATTTGGAGAAATGCGCTCAATTGATAATTGGGCTATAATTGGTCTTAATTGGCCTATAGTTAGGTTTAGAACCTCTTGAAACAAAATTTTGACGCTGAAAATGAGTTCTCCGCCTTCAAATTAGCTGAAAATCACAAAAAAAAACGAAATTTCGAAACTTTTTGGAAAATGCGCTCTATTGATAATTGGTCTRTAACTTGCCAAAAACTGATCATCAAGAACTAAAACTGCTCAAAATCGAGTTCCCCACCTAAATCTAGTCTGAAAACATTTAAAAAATTTTTTTTCAAAAAATTTGCAGATGTGCTCTTTTGATAATTGGCCTAAAATTGTCTCCGGGACTGCATGAAACCAACTTTCGAGCTTGAACATGAGTTTAATGCCAAAAACTGGTCCGGAAACCTTTAAAAAAATTGAAAAACAATTTTTTCAAAATTTTAGCAAATGCGCTCCAATGCAAATCTCTCCAAAACAAGGCTTAATTTTATTTTAAATAGTTTAAACTTCTCAAAATCGCATTCCCCATCAAAAACTAGCCCGAAAACCTCTAAAAACACAGTTTTCAAACTTTGAGCAAATGCGCTCCAATGCAAATCTCTCGAAAACGAGGCTTAAACTAATTTTAAATCTCTCAAACTGCTCAAAATCGAATTTCCCACTAAAAACTAGCCCTAAACCCGTCAAAAAACACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAATTGATAATTGGGCTATAA</pcr_primer_p1>
		<pcr_primer_p2>AGACTAGATTTAGGTGGGGAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTCAATTGATAATTGGGCTATAATTGGTCTTAATTGGCCTATAGTTAGGTTTAGAACCTCTTGAAACAAAATTTTGACGCTGAAAATGAGTTCTCCGCCTTCAAATTAGCTGAAAATCACAAAAAAAAACGAAATTTCGAAACTTTTTGGAAAATGCGCTCTATTGATAATTGGTCTATAACTTGCCAAAAACTGATCATCAAGAACTAAAACTGCTCAAAATCGAGTTCCCCACCTAAATCTAGTCT</canonical_amplicon>
		<polymorphic_amplicon>CTCAATTGATAATTGGGCTATAATTGGTCTTAATTGGCCTATAGTTAGGTTTAGAACCTCTTGAAACAAAATTTTGACGCTGAAAATGAGTTCTCCGCCTTCAAATTAGCTGAAAATCACAAAAAAAAACGAAATTTCGAAACTTTTTGGAAAATGCGCTCTATTGATAATTGGTCTRTAACTTGCCAAAAACTGATCATCAAGAACTAAAACTGCTCAAAATCGAGTTCCCCACCTAAATCTAGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12728</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>129553</contig_pos>
        <strand></strand>
        <context>ATTYCGCTCA[A/G]ATTACGGTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTTTTTCTTCTTTGAAACAAATATAAATTGTTTAAAAATTCCGCTCA</left_flank>
        <right_flank>ATTACGGTACCTACACTCACTTTTCTCAAGCTGACTTTTTTTAGCTTCAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTCCAAAACTTTTTTGCAAGGTTTTTGGGGACAGGAAATTTTGAAAAAATTTGAAAAAAAACAGAAAAATGAGATTTTTCTTTAAAAAAATTTTTTTTTTAATTTTTCTAAAACCTAGATTTTTGGCAGAAGTACCTCATGAAAATTAACAACAGTCCTTTTAAAAAGTTTGAAAATTTTTGAAAAAGTTCGAAAATTTTTGTTTTCATTTGAAATTCTCAAAATTTCAAAACCCCATAACTTTCTTCATTTTTGACATGGAAATTTGGTTTTTTGCTCAAAAAATAGGAAATTTCTTTTTCTTTAAAATAAATTTGAATTCTAAAAAATTTAGCTCAGATTAAGGTAGATATAGTTGACTTCATTTTTTGATAGTTAGAAATTTTCAAAGCCCCATAACTTTTTTCATTTTTTACCTAGAACATTGATGTTTAGCTCAAAAAATAGGAAATTTTTTCTTCTTTGAAACAAATATAAATTGTTTAAAAATTCCGCTCAAATTACGGTACCTACACTCACTTTTCTCAAGCTGACTTTTTTTAGCTTCAAGCTTTTTTTGAAAAATTTCAAAATCCTATAACTTTCTTCATTTTTGACCTAGAAATTTGATTTTTAGATTGAAAAGCGATAAATTTCATTGTCTCTTAGATTATGTAAATATTCACACAATTCCTGAACTTTTTGATTCTGAAAATGCACTATTTTTAGAGCCGACTACTTTTTAGTGGCACCAAATATTCAAATTGCCTTATCTCAGCTCAAAATGCTTCAAACCGCATGGTTTTTGGCTTAAAATGTCAGAAATTGCCCCTTCTTTTCGCAACGCTATAAAACATTACCACTAAATACAGCTTAAATATCAAAAATCCTACTATTTAACCCCAAAAAGTGCAAATTCCACCGCAAGCAATTTTCAGTCTAAACTTCAACGACGCTGTCAAACTCCAATCCAACAATGATATTCGAGTGAATTATACGGGTCATGTTCGCTATTATATT</canonical>
            <polymorphic>GGTCCAAAACTTTTTTGCAAGGTTTTTGGGGACAGGAAATTTTGAAAAAATTTGAAAAAAAACAGAAAAATGAGATTTTTCTTTAAAAAAATTTTTTTTTTAATTTTTCTAAAACCTAGATTTTTGGCAGAAGTACCTCATGAAAATTAACAACAGTCCTTTTAAAAAGTTTGAAAATTTTTGAAAAAGTTCGAAAATTTTTGTTTTCATTTGAAATTCTCAAAATTTCAAAACCCCATAACTTTCTTCATTTTTGACATGGAAATTTGGTTTTTTGCTCAAAAAATAGGAAATTTCTTTTTCTTTAAAATAAATTTGAATTCTAAAAAATTTAGCTCAGATTAAGGTAGATATAGTTGACTTCATTTTTTGATAGTTAGAAATTTTCAAAGCCCCATAACTTTTTTCATTTTTTACCTAGAACATTGATGTTTAGCTCAAAAAATAGGAAATTTTTTCTTCTTTGAAACAAATATAAATTGTTTAAAAATTCCGCTCARATTACGGTACCTACACTCACTTTTCTCAAGCTGACTTTTTTTAGCTTCAAGCTTTTTTTGAAAAATTTCAAAATCCTATAACTTTCTTCATTTTTGACCTAGAAATTTGATTTTTAGATTGAAAAGCGATAAATTTCATTGTCTCTTAGATTATGTAAATATTCACACAATTCCTGAACTTTTTGATTCTGAAAATGCACTATTTTTAGAGCCGACTACTTTTTAGTGGCACCAAATATTCAAATTGCCTTATCTCAGCTCAAAATGCTTCAAACCGCATGGTTTTTGGCTTAAAATGTCAGAAATTGCCCCTTCTTTTCGCAACGCTATAAAACATTACCACTAAATACAGCTTAAATATCAAAAATCCTACTATTTAACCCCAAAAAGTGCAAATTCCACCGCAAGCAATTTTCAGTCTAAACTTCAACGACGCTGTCAAACTCCAATCCAACAATGATATTCGAGTGAATTATACGGGTCATGTTCGCTATTATATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>91 74 69 64 61 61 53 43 41 40 40 37 37 31 30 28 28 27 21 20 19 15 12 11 11 11 10 9 6</canonical_bands>
                <polymorphic_bands>91 75 74 69 61 61 53 43 41 40 40 37 37 31 30 28 28 27 21 20 19 15 12 11 11 10 9 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGACATGGAAATTTGGTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAAGTTCAGGAATTGTGTGAATA</pcr_primer_p2>
		<pcr_amplicon_size>428</pcr_amplicon_size>
		<canonical_amplicon>TGACATGGAAATTTGGTTTTTTGCTCAAAAAATAGGAAATTTCTTTTTCTTTAAAATAAATTTGAATTCTAAAAAATTTAGCTCAGATTAAGGTAGATATAGTTGACTTCATTTTTTGATAGTTAGAAATTTTCAAAGCCCCATAACTTTTTTCATTTTTTACCTAGAACATTGATGTTTAGCTCAAAAAATAGGAAATTTTTTCTTCTTTGAAACAAATATAAATTGTTTAAAAATTCCGCTCAAATTACGGTACCTACACTCACTTTTCTCAAGCTGACTTTTTTTAGCTTCAAGCTTTTTTTGAAAAATTTCAAAATCCTATAACTTTCTTCATTTTTGACCTAGAAATTTGATTTTTAGATTGAAAAGCGATAAATTTCATTGTCTCTTAGATTATGTAAATATTCACACAATTCCTGAACTTT</canonical_amplicon>
		<polymorphic_amplicon>TGACATGGAAATTTGGTTTTTTGCTCAAAAAATAGGAAATTTCTTTTTCTTTAAAATAAATTTGAATTCTAAAAAATTTAGCTCAGATTAAGGTAGATATAGTTGACTTCATTTTTTGATAGTTAGAAATTTTCAAAGCCCCATAACTTTTTTCATTTTTTACCTAGAACATTGATGTTTAGCTCAAAAAATAGGAAATTTTTTCTTCTTTGAAACAAATATAAATTGTTTAAAAATTCCGCTCARATTACGGTACCTACACTCACTTTTCTCAAGCTGACTTTTTTTAGCTTCAAGCTTTTTTTGAAAAATTTCAAAATCCTATAACTTTCTTCATTTTTGACCTAGAAATTTGATTTTTAGATTGAAAAGCGATAAATTTCATTGTCTCTTAGATTATGTAAATATTCACACAATTCCTGAACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12729</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>129546</contig_pos>
        <strand></strand>
        <context>TTTAAAAATT[C/T]CGCTCARATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATAGGAAATTTTTTCTTCTTTGAAACAAATATAAATTGTTTAAAAATT</left_flank>
        <right_flank>CGCTCAAATTACGGTACCTACACTCACTTTTCTCAAGCTGACTTTTTTTA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTGGGTCCAAAACTTTTTTGCAAGGTTTTTGGGGACAGGAAATTTTGAAAAAATTTGAAAAAAAACAGAAAAATGAGATTTTTCTTTAAAAAAATTTTTTTTTTAATTTTTCTAAAACCTAGATTTTTGGCAGAAGTACCTCATGAAAATTAACAACAGTCCTTTTAAAAAGTTTGAAAATTTTTGAAAAAGTTCGAAAATTTTTGTTTTCATTTGAAATTCTCAAAATTTCAAAACCCCATAACTTTCTTCATTTTTGACATGGAAATTTGGTTTTTTGCTCAAAAAATAGGAAATTTCTTTTTCTTTAAAATAAATTTGAATTCTAAAAAATTTAGCTCAGATTAAGGTAGATATAGTTGACTTCATTTTTTGATAGTTAGAAATTTTCAAAGCCCCATAACTTTTTTCATTTTTTACCTAGAACATTGATGTTTAGCTCAAAAAATAGGAAATTTTTTCTTCTTTGAAACAAATATAAATTGTTTAAAAATTCCGCTCAAATTACGGTACCTACACTCACTTTTCTCAAGCTGACTTTTTTTAGCTTCAAGCTTTTTTTGAAAAATTTCAAAATCCTATAACTTTCTTCATTTTTGACCTAGAAATTTGATTTTTAGATTGAAAAGCGATAAATTTCATTGTCTCTTAGATTATGTAAATATTCACACAATTCCTGAACTTTTTGATTCTGAAAATGCACTATTTTTAGAGCCGACTACTTTTTAGTGGCACCAAATATTCAAATTGCCTTATCTCAGCTCAAAATGCTTCAAACCGCATGGTTTTTGGCTTAAAATGTCAGAAATTGCCCCTTCTTTTCGCAACGCTATAAAACATTACCACTAAATACAGCTTAAATATCAAAAATCCTACTATTTAACCCCAAAAAGTGCAAATTCCACCGCAAGCAATTTTCAGTCTAAACTTCAACGACGCTGTCAAACTCCAATCCAACAATGATATTCGAGTGAATTATACGGGTCATGTTCGCTA</canonical>
            <polymorphic>TTTTTTGGGTCCAAAACTTTTTTGCAAGGTTTTTGGGGACAGGAAATTTTGAAAAAATTTGAAAAAAAACAGAAAAATGAGATTTTTCTTTAAAAAAATTTTTTTTTTAATTTTTCTAAAACCTAGATTTTTGGCAGAAGTACCTCATGAAAATTAACAACAGTCCTTTTAAAAAGTTTGAAAATTTTTGAAAAAGTTCGAAAATTTTTGTTTTCATTTGAAATTCTCAAAATTTCAAAACCCCATAACTTTCTTCATTTTTGACATGGAAATTTGGTTTTTTGCTCAAAAAATAGGAAATTTCTTTTTCTTTAAAATAAATTTGAATTCTAAAAAATTTAGCTCAGATTAAGGTAGATATAGTTGACTTCATTTTTTGATAGTTAGAAATTTTCAAAGCCCCATAACTTTTTTCATTTTTTACCTAGAACATTGATGTTTAGCTCAAAAAATAGGAAATTTTTTCTTCTTTGAAACAAATATAAATTGTTTAAAAATTYCGCTCAAATTACGGTACCTACACTCACTTTTCTCAAGCTGACTTTTTTTAGCTTCAAGCTTTTTTTGAAAAATTTCAAAATCCTATAACTTTCTTCATTTTTGACCTAGAAATTTGATTTTTAGATTGAAAAGCGATAAATTTCATTGTCTCTTAGATTATGTAAATATTCACACAATTCCTGAACTTTTTGATTCTGAAAATGCACTATTTTTAGAGCCGACTACTTTTTAGTGGCACCAAATATTCAAATTGCCTTATCTCAGCTCAAAATGCTTCAAACCGCATGGTTTTTGGCTTAAAATGTCAGAAATTGCCCCTTCTTTTCGCAACGCTATAAAACATTACCACTAAATACAGCTTAAATATCAAAAATCCTACTATTTAACCCCAAAAAGTGCAAATTCCACCGCAAGCAATTTTCAGTCTAAACTTCAACGACGCTGTCAAACTCCAATCCAACAATGATATTCGAGTGAATTATACGGGTCATGTTCGCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>500 282 127 91</canonical_bands>
                <polymorphic_bands>782 127 91</polymorphic_bands>
            </assay>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>263 99 86 75 69 53 44 41 40 40 38 28 28 21 20 19 11 10 9 6</canonical_bands>
                <polymorphic_bands>263 113 99 86 69 53 44 41 40 40 28 28 21 20 19 11 10 9 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGACATGGAAATTTGGTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAAGTTCAGGAATTGTGTGAATA</pcr_primer_p2>
		<pcr_amplicon_size>428</pcr_amplicon_size>
		<canonical_amplicon>TGACATGGAAATTTGGTTTTTTGCTCAAAAAATAGGAAATTTCTTTTTCTTTAAAATAAATTTGAATTCTAAAAAATTTAGCTCAGATTAAGGTAGATATAGTTGACTTCATTTTTTGATAGTTAGAAATTTTCAAAGCCCCATAACTTTTTTCATTTTTTACCTAGAACATTGATGTTTAGCTCAAAAAATAGGAAATTTTTTCTTCTTTGAAACAAATATAAATTGTTTAAAAATTCCGCTCAAATTACGGTACCTACACTCACTTTTCTCAAGCTGACTTTTTTTAGCTTCAAGCTTTTTTTGAAAAATTTCAAAATCCTATAACTTTCTTCATTTTTGACCTAGAAATTTGATTTTTAGATTGAAAAGCGATAAATTTCATTGTCTCTTAGATTATGTAAATATTCACACAATTCCTGAACTTT</canonical_amplicon>
		<polymorphic_amplicon>TGACATGGAAATTTGGTTTTTTGCTCAAAAAATAGGAAATTTCTTTTTCTTTAAAATAAATTTGAATTCTAAAAAATTTAGCTCAGATTAAGGTAGATATAGTTGACTTCATTTTTTGATAGTTAGAAATTTTCAAAGCCCCATAACTTTTTTCATTTTTTACCTAGAACATTGATGTTTAGCTCAAAAAATAGGAAATTTTTTCTTCTTTGAAACAAATATAAATTGTTTAAAAATTYCGCTCAAATTACGGTACCTACACTCACTTTTCTCAAGCTGACTTTTTTTAGCTTCAAGCTTTTTTTGAAAAATTTCAAAATCCTATAACTTTCTTCATTTTTGACCTAGAAATTTGATTTTTAGATTGAAAAGCGATAAATTTCATTGTCTCTTAGATTATGTAAATATTCACACAATTCCTGAACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12730</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>129519</contig_pos>
        <strand></strand>
        <context>TTTCTTCTTT[G/A]AAACAAATAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACCTAGAACATTGATGTTTAGCTCAAAAAATAGGAAATTTTTTCTTCTTT</left_flank>
        <right_flank>AAACAAATATAAATTGTTTAAAAATTCCGCTCAAATTACGGTACCTACAC</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAGGAGAACGGTCAAAAGTTCGATTTTTTTTGGGTCCAAAACTTTTTTGCAAGGTTTTTGGGGACAGGAAATTTTGAAAAAATTTGAAAAAAAACAGAAAAATGAGATTTTTCTTTAAAAAAATTTTTTTTTTAATTTTTCTAAAACCTAGATTTTTGGCAGAAGTACCTCATGAAAATTAACAACAGTCCTTTTAAAAAGTTTGAAAATTTTTGAAAAAGTTCGAAAATTTTTGTTTTCATTTGAAATTCTCAAAATTTCAAAACCCCATAACTTTCTTCATTTTTGACATGGAAATTTGGTTTTTTGCTCAAAAAATAGGAAATTTCTTTTTCTTTAAAATAAATTTGAATTCTAAAAAATTTAGCTCAGATTAAGGTAGATATAGTTGACTTCATTTTTTGATAGTTAGAAATTTTCAAAGCCCCATAACTTTTTTCATTTTTTACCTAGAACATTGATGTTTAGCTCAAAAAATAGGAAATTTTTTCTTCTTTGAAACAAATATAAATTGTTTAAAAATTCCGCTCAAATTACGGTACCTACACTCACTTTTCTCAAGCTGACTTTTTTTAGCTTCAAGCTTTTTTTGAAAAATTTCAAAATCCTATAACTTTCTTCATTTTTGACCTAGAAATTTGATTTTTAGATTGAAAAGCGATAAATTTCATTGTCTCTTAGATTATGTAAATATTCACACAATTCCTGAACTTTTTGATTCTGAAAATGCACTATTTTTAGAGCCGACTACTTTTTAGTGGCACCAAATATTCAAATTGCCTTATCTCAGCTCAAAATGCTTCAAACCGCATGGTTTTTGGCTTAAAATGTCAGAAATTGCCCCTTCTTTTCGCAACGCTATAAAACATTACCACTAAATACAGCTTAAATATCAAAAATCCTACTATTTAACCCCAAAAAGTGCAAATTCCACCGCAAGCAATTTTCAGTCTAAACTTCAACGACGCTGTCAAACTCCAATCCAACAATGATATTCG</canonical>
            <polymorphic>TTGAGGAGAACGGTCAAAAGTTCGATTTTTTTTGGGTCCAAAACTTTTTTGCAAGGTTTTTGGGGACAGGAAATTTTGAAAAAATTTGAAAAAAAACAGAAAAATGAGATTTTTCTTTAAAAAAATTTTTTTTTTAATTTTTCTAAAACCTAGATTTTTGGCAGAAGTACCTCATGAAAATTAACAACAGTCCTTTTAAAAAGTTTGAAAATTTTTGAAAAAGTTCGAAAATTTTTGTTTTCATTTGAAATTCTCAAAATTTCAAAACCCCATAACTTTCTTCATTTTTGACATGGAAATTTGGTTTTTTGCTCAAAAAATAGGAAATTTCTTTTTCTTTAAAATAAATTTGAATTCTAAAAAATTTAGCTCAGATTAAGGTAGATATAGTTGACTTCATTTTTTGATAGTTAGAAATTTTCAAAGCCCCATAACTTTTTTCATTTTTTACCTAGAACATTGATGTTTAGCTCAAAAAATAGGAAATTTTTTCTTCTTTRAAACAAATATAAATTGTTTAAAAATTCCGCTCAAATTACGGTACCTACACTCACTTTTCTCAAGCTGACTTTTTTTAGCTTCAAGCTTTTTTTGAAAAATTTCAAAATCCTATAACTTTCTTCATTTTTGACCTAGAAATTTGATTTTTAGATTGAAAAGCGATAAATTTCATTGTCTCTTAGATTATGTAAATATTCACACAATTCCTGAACTTTTTGATTCTGAAAATGCACTATTTTTAGAGCCGACTACTTTTTAGTGGCACCAAATATTCAAATTGCCTTATCTCAGCTCAAAATGCTTCAAACCGCATGGTTTTTGGCTTAAAATGTCAGAAATTGCCCCTTCTTTTCGCAACGCTATAAAACATTACCACTAAATACAGCTTAAATATCAAAAATCCTACTATTTAACCCCAAAAAGTGCAAATTCCACCGCAAGCAATTTTCAGTCTAAACTTCAACGACGCTGTCAAACTCCAATCCAACAATGATATTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACATGGAAATTTGGTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGTGAGTGTAGGTACCGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>270</pcr_amplicon_size>
		<canonical_amplicon>TGACATGGAAATTTGGTTTTTTGCTCAAAAAATAGGAAATTTCTTTTTCTTTAAAATAAATTTGAATTCTAAAAAATTTAGCTCAGATTAAGGTAGATATAGTTGACTTCATTTTTTGATAGTTAGAAATTTTCAAAGCCCCATAACTTTTTTCATTTTTTACCTAGAACATTGATGTTTAGCTCAAAAAATAGGAAATTTTTTCTTCTTTGAAACAAATATAAATTGTTTAAAAATTCCGCTCAAATTACGGTACCTACACTCACTTTT</canonical_amplicon>
		<polymorphic_amplicon>TGACATGGAAATTTGGTTTTTTGCTCAAAAAATAGGAAATTTCTTTTTCTTTAAAATAAATTTGAATTCTAAAAAATTTAGCTCAGATTAAGGTAGATATAGTTGACTTCATTTTTTGATAGTTAGAAATTTTCAAAGCCCCATAACTTTTTTCATTTTTTACCTAGAACATTGATGTTTAGCTCAAAAAATAGGAAATTTTTTCTTCTTTRAAACAAATATAAATTGTTTAAAAATTCCGCTCAAATTACGGTACCTACACTCACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12739</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>151165</contig_pos>
        <strand>+</strand>
        <context>TTTCGAGAAG[C/T]TRTAGTRCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAG</left_flank>
        <right_flank>TATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTAACATAAATTGGAAATATTGGAACAGCCATATGGATAATCACATATATGGAAGCGAATTCATTGATTGTAGTGATGCCTCCGAGGATTCCTGATTTCTCGGATTCCAAATGATATTCTGGGAAGAATTTGGTGGCAAGGGGAAGGATTTCCTCACGATCAACTACAGTAGGCCAGTAGATGATCTGGAAGAAAATAAAAACTAGCAAAAAACTTTGAAACCCAAAGGAATCGAACTTTTGACCCTTCTTCTCCATAGACACCTCTCTTACGTCTTGAGCTACCGCGGCGCCCACGGGGCGCCTAGGTGTGCAGGGGTGGCGCAGAGGATAAGAGGGAGGAACTTGGAGCAGAATGGTCAAAAGTTCGATTTCTTAGGGTTCTAAAGTGTTTTGCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAACGGTTATTTTTCGAGATTTGAAGTGACAAATTTCCAGAAAAAGCTTCAATGTGTGTCAAAACATTCGGAATTTCAAAAAAAAAAAAAATTCAGATTTTCAGAAATATTCAAATTTTCTGAAAATTTGAAACATGGTAGGTGTCGTACCGCCTGAAACAAGCTAGGTGTATAAATGATAAAAACAATGAGGATGAGCCATTTTCGGGATAATGGGGACTTGTGAAGAATATAATATCTATAGGAGAACGATAATAATAGGGACCATGTCGTGTGTGGGAAGCAGTGATAGAACAGGGAGAGGCTGAAATTTTCTTTTTGGCTGAAAATCAAAAAACAAAAAAAAATTCGAAAAGACA</canonical>
            <polymorphic>ACTAACATAAATTGGAAATATTGGAACAGCCATATGGATAATCACATATATGGAAGCGAATTCATTGATTGTAGTGATGCCTCCGAGGATTCCTGATTTCTCGGATTCCAAATGATATTCTGGGAAGAATTTGGTGGCAAGGGGAAGGATTTCCTCACGATCAACTACAGTAGGCCAGTAGATGATCTGGAAGAAAATAAAAACTAGCAAAAAACTTTGAAACCCAAAGGAATCGAACTTTTGACCCTTCTTCTCCATAGACACCTCTCTTACGTCTTGAGCTACCGCGGCGCCCACGGGGCGCCTAGGTGTGCAGGGGTGGCGCAGAGGATAAGAGGGAGGAACTTGGAGCAGAATGGTCAAAAGTTCGATTTCTTAGGGTTCTAAAGTGTTTTGCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGYTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAACGGTTATTTTTCGAGATTTGAAGTGACAAATTTCCAGAAAAAGCTTCAATGTGTGTCAAAACATTCGGAATTTCAAAAAAAAAAAAAATTCAGATTTTCAGAAATATTCAAATTTTCTGAAAATTTGAAACATGGTAGGTGTCGTACCGCCTGAAACAAGCTAGGTGTATAAATGATAAAAACAATGAGGATGAGCCATTTTCGGGATAATGGGGACTTGTGAAGAATATAATATCTATAGGAGAACGATAATAATAGGGACCATGTCGTGTGTGGGAAGCAGTGATAGAACAGGGAGAGGCTGAAATTTTCTTTTTGGCTGAAAATCAAAAAACAAAAAAAAATTCGAAAAGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAGTTTTGAAAGTTAGGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCAAATACATTTTTAAACTGAACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGYTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12740</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>151167</contig_pos>
        <strand>+</strand>
        <context>TCGAGAAGYT[A/G]TAGTRCCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTT</left_flank>
        <right_flank>TAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACATAAATTGGAAATATTGGAACAGCCATATGGATAATCACATATATGGAAGCGAATTCATTGATTGTAGTGATGCCTCCGAGGATTCCTGATTTCTCGGATTCCAAATGATATTCTGGGAAGAATTTGGTGGCAAGGGGAAGGATTTCCTCACGATCAACTACAGTAGGCCAGTAGATGATCTGGAAGAAAATAAAAACTAGCAAAAAACTTTGAAACCCAAAGGAATCGAACTTTTGACCCTTCTTCTCCATAGACACCTCTCTTACGTCTTGAGCTACCGCGGCGCCCACGGGGCGCCTAGGTGTGCAGGGGTGGCGCAGAGGATAAGAGGGAGGAACTTGGAGCAGAATGGTCAAAAGTTCGATTTCTTAGGGTTCTAAAGTGTTTTGCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAACGGTTATTTTTCGAGATTTGAAGTGACAAATTTCCAGAAAAAGCTTCAATGTGTGTCAAAACATTCGGAATTTCAAAAAAAAAAAAAATTCAGATTTTCAGAAATATTCAAATTTTCTGAAAATTTGAAACATGGTAGGTGTCGTACCGCCTGAAACAAGCTAGGTGTATAAATGATAAAAACAATGAGGATGAGCCATTTTCGGGATAATGGGGACTTGTGAAGAATATAATATCTATAGGAGAACGATAATAATAGGGACCATGTCGTGTGTGGGAAGCAGTGATAGAACAGGGAGAGGCTGAAATTTTCTTTTTGGCTGAAAATCAAAAAACAAAAAAAAATTCGAAAAGACATT</canonical>
            <polymorphic>TAACATAAATTGGAAATATTGGAACAGCCATATGGATAATCACATATATGGAAGCGAATTCATTGATTGTAGTGATGCCTCCGAGGATTCCTGATTTCTCGGATTCCAAATGATATTCTGGGAAGAATTTGGTGGCAAGGGGAAGGATTTCCTCACGATCAACTACAGTAGGCCAGTAGATGATCTGGAAGAAAATAAAAACTAGCAAAAAACTTTGAAACCCAAAGGAATCGAACTTTTGACCCTTCTTCTCCATAGACACCTCTCTTACGTCTTGAGCTACCGCGGCGCCCACGGGGCGCCTAGGTGTGCAGGGGTGGCGCAGAGGATAAGAGGGAGGAACTTGGAGCAGAATGGTCAAAAGTTCGATTTCTTAGGGTTCTAAAGTGTTTTGCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTRTAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAACGGTTATTTTTCGAGATTTGAAGTGACAAATTTCCAGAAAAAGCTTCAATGTGTGTCAAAACATTCGGAATTTCAAAAAAAAAAAAAATTCAGATTTTCAGAAATATTCAAATTTTCTGAAAATTTGAAACATGGTAGGTGTCGTACCGCCTGAAACAAGCTAGGTGTATAAATGATAAAAACAATGAGGATGAGCCATTTTCGGGATAATGGGGACTTGTGAAGAATATAATATCTATAGGAGAACGATAATAATAGGGACCATGTCGTGTGTGGGAAGCAGTGATAGAACAGGGAGAGGCTGAAATTTTCTTTTTGGCTGAAAATCAAAAAACAAAAAAAAATTCGAAAAGACATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAGTTTTGAAAGTTAGGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCAAATACATTTTTAAACTGAACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTRTAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12741</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>151190</contig_pos>
        <strand>+</strand>
        <context>TYGAACTTTC[C/T]CGCMRTTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTC</left_flank>
        <right_flank>CGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGCCATATGGATAATCACATATATGGAAGCGAATTCATTGATTGTAGTGATGCCTCCGAGGATTCCTGATTTCTCGGATTCCAAATGATATTCTGGGAAGAATTTGGTGGCAAGGGGAAGGATTTCCTCACGATCAACTACAGTAGGCCAGTAGATGATCTGGAAGAAAATAAAAACTAGCAAAAAACTTTGAAACCCAAAGGAATCGAACTTTTGACCCTTCTTCTCCATAGACACCTCTCTTACGTCTTGAGCTACCGCGGCGCCCACGGGGCGCCTAGGTGTGCAGGGGTGGCGCAGAGGATAAGAGGGAGGAACTTGGAGCAGAATGGTCAAAAGTTCGATTTCTTAGGGTTCTAAAGTGTTTTGCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAACGGTTATTTTTCGAGATTTGAAGTGACAAATTTCCAGAAAAAGCTTCAATGTGTGTCAAAACATTCGGAATTTCAAAAAAAAAAAAAATTCAGATTTTCAGAAATATTCAAATTTTCTGAAAATTTGAAACATGGTAGGTGTCGTACCGCCTGAAACAAGCTAGGTGTATAAATGATAAAAACAATGAGGATGAGCCATTTTCGGGATAATGGGGACTTGTGAAGAATATAATATCTATAGGAGAACGATAATAATAGGGACCATGTCGTGTGTGGGAAGCAGTGATAGAACAGGGAGAGGCTGAAATTTTCTTTTTGGCTGAAAATCAAAAAACAAAAAAAAATTCGAAAAGACATTTTTTTTTGAAAACTTTTTTCGCC</canonical>
            <polymorphic>ACAGCCATATGGATAATCACATATATGGAAGCGAATTCATTGATTGTAGTGATGCCTCCGAGGATTCCTGATTTCTCGGATTCCAAATGATATTCTGGGAAGAATTTGGTGGCAAGGGGAAGGATTTCCTCACGATCAACTACAGTAGGCCAGTAGATGATCTGGAAGAAAATAAAAACTAGCAAAAAACTTTGAAACCCAAAGGAATCGAACTTTTGACCCTTCTTCTCCATAGACACCTCTCTTACGTCTTGAGCTACCGCGGCGCCCACGGGGCGCCTAGGTGTGCAGGGGTGGCGCAGAGGATAAGAGGGAGGAACTTGGAGCAGAATGGTCAAAAGTTCGATTTCTTAGGGTTCTAAAGTGTTTTGCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCYCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAACGGTTATTTTTCGAGATTTGAAGTGACAAATTTCCAGAAAAAGCTTCAATGTGTGTCAAAACATTCGGAATTTCAAAAAAAAAAAAAATTCAGATTTTCAGAAATATTCAAATTTTCTGAAAATTTGAAACATGGTAGGTGTCGTACCGCCTGAAACAAGCTAGGTGTATAAATGATAAAAACAATGAGGATGAGCCATTTTCGGGATAATGGGGACTTGTGAAGAATATAATATCTATAGGAGAACGATAATAATAGGGACCATGTCGTGTGTGGGAAGCAGTGATAGAACAGGGAGAGGCTGAAATTTTCTTTTTGGCTGAAAATCAAAAAACAAAAAAAAATTCGAAAAGACATTTTTTTTTGAAAACTTTTTTCGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>266 260 240 234</canonical_bands>
                <polymorphic_bands>506 260 234</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTAGTTTTGAAAGTTAGGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCAAATACATTTTTAAACTGAACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCYCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12871</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>232716</contig_pos>
        <strand></strand>
        <context>ATTATAAACC[A/C]CAGCGGTCGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCGCGATGGCGCACACTGAGGCAGAACGGCGTCAATCTAATTATAAACC</left_flank>
        <right_flank>CAGCGGTCGCCCTCTCTTTTCTCCACACTGTATTTAGAAAACCACCCAGC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTAAAATCAATAAAATCAATAAATGACCTAAAACTTTTTTGTGCATTTTTTAGGCCGCCAGAGACACTCACTTTGTGCATTCCACGACGAAAATCGATTTCCTGTTTCATTCGATCAACCATTTCCCGTTTTTCAGCCAATAAATCAAGACATTCTTGAATTTCAGCATCCAAACTGGCCGACGAATCCATTGTTGCTCCGAGATGAGCACGTTTTTGTTTTACCTGGAAATTTTGAAAATTTTAATTCTTAAAATTGGAAACATTTGAAGTTTTTAAAGAGTATTTTACAGAAATTTGTTTTAAAAAGTTACGAGAACAACTGTTTTTTGAGTTTTAAACGACTCAAAACTCGGTTTCCCAATCAAATCAAAAATGCAAAAAGACTTTGCCACCTAAAGGAATCGAACTTTTGACCTTTTGCCTCAAAGACAAAGCTGTAACTACTGCGCGATGGCGCACACTGAGGCAGAACGGCGTCAATCTAATTATAAACCACAGCGGTCGCCCTCTCTTTTCTCCACACTGTATTTAGAAAACCACCCAGCGGTCGGCGATGCCCCCTTGCACACTTGGTGTAGTGGTAAGGAGCTAGACTTTGGATCTAGAGATCGCGAGTTCGATTCTTTTTGACGTCAAACTCTTTTTGCTTCTTTGTTTAGCTGTATGAACTGAAAATCAAGTTCCTAGGTGAAAAATGAGCATATTTGAGAACATTTTTACATTCATTCCCAACCGATTTTCATGAATTTTGTCTTAAAATGTCCCAATTTTTTCTAGAATATACTAAAAATCGCACCTCATTCATAAGTTGAGTGAGATGTAGTGCCCATGCAGTGACTCGATTCGAAACGTCTGTTTCTCTGCGTCTCGCCTTATCAACTCGGTCCCAAAGTTCCGAAATTTGACATTCAACCAAGCCAATTCGATTGCTCATCTGCCGTTTTCTCTCCATTTCGATTTCCAATTGATTCTCCAAAAGACGAACGTATTCATCC</canonical>
            <polymorphic>TTTTTAAAATCAATAAAATCAATAAATGACCTAAAACTTTTTTGTGCATTTTTTAGGCCGCCAGAGACACTCACTTTGTGCATTCCACGACGAAAATCGATTTCCTGTTTCATTCGATCAACCATTTCCCGTTTTTCAGCCAATAAATCAAGACATTCTTGAATTTCAGCATCCAAACTGGCCGACGAATCCATTGTTGCTCCGAGATGAGCACGTTTTTGTTTTACCTGGAAATTTTGAAAATTTTAATTCTTAAAATTGGAAACATTTGAAGTTTTTAAAGAGTATTTTACAGAAATTTGTTTTAAAAAGTTACGAGAACAACTGTTTTTTGAGTTTTAAACGACTCAAAACTCGGTTTCCCAATCAAATCAAAAATGCAAAAAGACTTTGCCACCTAAAGGAATCGAACTTTTGACCTTTTGCCTCAAAGACAAAGCTGTAACTACTGCGCGATGGCGCACACTGAGGCAGAACGGCGTCAATCTAATTATAAACCMCAGCGGTCGCCCTCTCTTTTCTCCACACTGTATTTAGAAAACCACCCAGCGGTCGGCGATGCCCCCTTGCACACTTGGTGTAGTGGTAAGGAGCTAGACTTTGGATCTAGAGATCGCGAGTTCGATTCTTTTTGACGTCAAACTCTTTTTGCTTCTTTGTTTAGCTGTATGAACTGAAAATCAAGTTCCTAGGTGAAAAATGAGCATATTTGAGAACATTTTTACATTCATTCCCAACCGATTTTCATGAATTTTGTCTTAAAATGTCCCAATTTTTTCTAGAATATACTAAAAATCGCACCTCATTCATAAGTTGAGTGAGATGTAGTGCCCATGCAGTGACTCGATTCGAAACGTCTGTTTCTCTGCGTCTCGCCTTATCAACTCGGTCCCAAAGTTCCGAAATTTGACATTCAACCAAGCCAATTCGATTGCTCATCTGCCGTTTTCTCTCCATTTCGATTTCCAATTGATTCTCCAAAAGACGAACGTATTCATCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>183 159 126 110 105 67 46 35 27 25 23 20 17 11 10 7 7 7 5 4 2 2 2</canonical_bands>
                <polymorphic_bands>183 159 126 110 105 67 60 46 27 23 20 17 11 10 7 7 7 5 4 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAAAAAGTTACGAGAACAACTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTTACCACTACACCAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>TTTAAAAAGTTACGAGAACAACTGTTTTTTGAGTTTTAAACGACTCAAAACTCGGTTTCCCAATCAAATCAAAAATGCAAAAAGACTTTGCCACCTAAAGGAATCGAACTTTTGACCTTTTGCCTCAAAGACAAAGCTGTAACTACTGCGCGATGGCGCACACTGAGGCAGAACGGCGTCAATCTAATTATAAACCACAGCGGTCGCCCTCTCTTTTCTCCACACTGTATTTAGAAAACCACCCAGCGGTCGGCGATGCCCCCTTGCACACTTGGTGTAGTGGTAAGGA</canonical_amplicon>
		<polymorphic_amplicon>TTTAAAAAGTTACGAGAACAACTGTTTTTTGAGTTTTAAACGACTCAAAACTCGGTTTCCCAATCAAATCAAAAATGCAAAAAGACTTTGCCACCTAAAGGAATCGAACTTTTGACCTTTTGCCTCAAAGACAAAGCTGTAACTACTGCGCGATGGCGCACACTGAGGCAGAACGGCGTCAATCTAATTATAAACCMCAGCGGTCGCCCTCTCTTTTCTCCACACTGTATTTAGAAAACCACCCAGCGGTCGGCGATGCCCCCTTGCACACTTGGTGTAGTGGTAAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12872</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>232763</contig_pos>
        <strand></strand>
        <context>GAAAACCACC[C/T]AGCGGTCGGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCACAGCGGTCGCCCTCTCTTTTCTCCACACTGTATTTAGAAAACCACC</left_flank>
        <right_flank>AGCGGTCGGCGATGCCCCCTTGCACACTTGGTGTAGTGGTAAGGAGCTAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTTAGGCCGCCAGAGACACTCACTTTGTGCATTCCACGACGAAAATCGATTTCCTGTTTCATTCGATCAACCATTTCCCGTTTTTCAGCCAATAAATCAAGACATTCTTGAATTTCAGCATCCAAACTGGCCGACGAATCCATTGTTGCTCCGAGATGAGCACGTTTTTGTTTTACCTGGAAATTTTGAAAATTTTAATTCTTAAAATTGGAAACATTTGAAGTTTTTAAAGAGTATTTTACAGAAATTTGTTTTAAAAAGTTACGAGAACAACTGTTTTTTGAGTTTTAAACGACTCAAAACTCGGTTTCCCAATCAAATCAAAAATGCAAAAAGACTTTGCCACCTAAAGGAATCGAACTTTTGACCTTTTGCCTCAAAGACAAAGCTGTAACTACTGCGCGATGGCGCACACTGAGGCAGAACGGCGTCAATCTAATTATAAACCACAGCGGTCGCCCTCTCTTTTCTCCACACTGTATTTAGAAAACCACCCAGCGGTCGGCGATGCCCCCTTGCACACTTGGTGTAGTGGTAAGGAGCTAGACTTTGGATCTAGAGATCGCGAGTTCGATTCTTTTTGACGTCAAACTCTTTTTGCTTCTTTGTTTAGCTGTATGAACTGAAAATCAAGTTCCTAGGTGAAAAATGAGCATATTTGAGAACATTTTTACATTCATTCCCAACCGATTTTCATGAATTTTGTCTTAAAATGTCCCAATTTTTTCTAGAATATACTAAAAATCGCACCTCATTCATAAGTTGAGTGAGATGTAGTGCCCATGCAGTGACTCGATTCGAAACGTCTGTTTCTCTGCGTCTCGCCTTATCAACTCGGTCCCAAAGTTCCGAAATTTGACATTCAACCAAGCCAATTCGATTGCTCATCTGCCGTTTTCTCTCCATTTCGATTTCCAATTGATTCTCCAAAAGACGAACGTATTCATCCACGTCGTGCTCGTATTCCGCTACTGACTCACTCTGCAAATTCGCTCC</canonical>
            <polymorphic>ATTTTTTAGGCCGCCAGAGACACTCACTTTGTGCATTCCACGACGAAAATCGATTTCCTGTTTCATTCGATCAACCATTTCCCGTTTTTCAGCCAATAAATCAAGACATTCTTGAATTTCAGCATCCAAACTGGCCGACGAATCCATTGTTGCTCCGAGATGAGCACGTTTTTGTTTTACCTGGAAATTTTGAAAATTTTAATTCTTAAAATTGGAAACATTTGAAGTTTTTAAAGAGTATTTTACAGAAATTTGTTTTAAAAAGTTACGAGAACAACTGTTTTTTGAGTTTTAAACGACTCAAAACTCGGTTTCCCAATCAAATCAAAAATGCAAAAAGACTTTGCCACCTAAAGGAATCGAACTTTTGACCTTTTGCCTCAAAGACAAAGCTGTAACTACTGCGCGATGGCGCACACTGAGGCAGAACGGCGTCAATCTAATTATAAACCACAGCGGTCGCCCTCTCTTTTCTCCACACTGTATTTAGAAAACCACCYAGCGGTCGGCGATGCCCCCTTGCACACTTGGTGTAGTGGTAAGGAGCTAGACTTTGGATCTAGAGATCGCGAGTTCGATTCTTTTTGACGTCAAACTCTTTTTGCTTCTTTGTTTAGCTGTATGAACTGAAAATCAAGTTCCTAGGTGAAAAATGAGCATATTTGAGAACATTTTTACATTCATTCCCAACCGATTTTCATGAATTTTGTCTTAAAATGTCCCAATTTTTTCTAGAATATACTAAAAATCGCACCTCATTCATAAGTTGAGTGAGATGTAGTGCCCATGCAGTGACTCGATTCGAAACGTCTGTTTCTCTGCGTCTCGCCTTATCAACTCGGTCCCAAAGTTCCGAAATTTGACATTCAACCAAGCCAATTCGATTGCTCATCTGCCGTTTTCTCTCCATTTCGATTTCCAATTGATTCTCCAAAAGACGAACGTATTCATCCACGTCGTGCTCGTATTCCGCTACTGACTCACTCTGCAAATTCGCTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>498 456 46</canonical_bands>
                <polymorphic_bands>544 456</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGCGTCAATCTAATTATAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATGTAAAAATGTTCTCAAATATGC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CGGCGTCAATCTAATTATAAACCACAGCGGTCGCCCTCTCTTTTCTCCACACTGTATTTAGAAAACCACCCAGCGGTCGGCGATGCCCCCTTGCACACTTGGTGTAGTGGTAAGGAGCTAGACTTTGGATCTAGAGATCGCGAGTTCGATTCTTTTTGACGTCAAACTCTTTTTGCTTCTTTGTTTAGCTGTATGAACTGAAAATCAAGTTCCTAGGTGAAAAATGAGCATATTTGAGAACATTTTTACAT</canonical_amplicon>
		<polymorphic_amplicon>CGGCGTCAATCTAATTATAAACCACAGCGGTCGCCCTCTCTTTTCTCCACACTGTATTTAGAAAACCACCYAGCGGTCGGCGATGCCCCCTTGCACACTTGGTGTAGTGGTAAGGAGCTAGACTTTGGATCTAGAGATCGCGAGTTCGATTCTTTTTGACGTCAAACTCTTTTTGCTTCTTTGTTTAGCTGTATGAACTGAAAATCAAGTTCCTAGGTGAAAAATGAGCATATTTGAGAACATTTTTACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12873</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>235907</contig_pos>
        <strand>+</strand>
        <context>CATTACAGTC[A/T]ATTGTGGAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCATCGGTTTCATTTGTGACGTGGCAAACATTCGATGATACATTACAGTC</left_flank>
        <right_flank>ATTGTGGAGTACGGTAGTGATTGGAAATTTCTGAATCAATCAGTTTTGGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGATTTCAACAAACAACATCAAACGTCTATTTTCCAAACACATTTTATTCTGATAACCACTGATTGAATTTTATGATCAGGAAAAAAATCTGAAAAATTTAAAAAAAAAGAAGATTTTTTTCCCATTTTTTTCAAATTGAATGTTTGCTCTCAAATAACTATATAAATGTAATCTTATCACTTGATTTTTCTTATCATTATCAGCTGACCCCCCTCTTCATTCCCCGTCTTATTGACCAAACCGTCTATAACTTTCCTTCCCTCTAAAATTTTTAAAAAAATGAGGATTTTTCTATATTTCCTAGAATATTTTCTAATACCCCAAATCTGTTGGACCCATCAATACCTGCCAATCGATCGACTTCCTGATTGGAAATTGAAAAATGATGGAAACATCGGTCCATCTTACGGTCAACCCGAGCAAATTCGTATTTCCTATGGAGGAGACCCATCGGTTTCATTTGTGACGTGGCAAACATTCGATGATACATTACAGTCTATTGTGGAGTACGGTAGTGATTGGAAATTTCTGAATCAATCAGTTTTGGGACGATGTTCCGTTTTCTTGGATCGAAATAAGAATAGTGTGTGGAGATATATCCATCGAGCCAATTTGACGGCTCTGGTACCCGGACAAACTTATTGTTAGTTTTTAAAATTTTCATAATCTGAAAATCCAAAAAATTGGGATCATTTTGAGCCAAAAAACATAAAAATCGGATGAAAATTAAGATATTTATAGAAAGTTGAAATTTTTTCTAAAAATTGAAATTTTCAAAATTTTCGAAAAAATCAAAATTTTCCAAATATTGTCATTTTTATACTCATTCGAATTTTCTCGAAATTTTAAATTGAACATTTTAAATTTTAAGAGTCTTGACACAAAAATGAACGTAATACAGTAGTTTGAAAATTGACTTTTTGATGAAAAATGGGATTTTTTTTCAAAAATCATCGCTATTTTGATTTTTAGCAAAGATTTTTTTTTTGAAAATTGTT</canonical>
            <polymorphic>TAGATTTCAACAAACAACATCAAACGTCTATTTTCCAAACACATTTTATTCTGATAACCACTGATTGAATTTTATGATCAGGAAAAAAATCTGAAAAATTTAAAAAAAAAGAAGATTTTTTTCCCATTTTTTTCAAATTGAATGTTTGCTCTCAAATAACTATATAAATGTAATCTTATCACTTGATTTTTCTTATCATTATCAGCTGACCCCCCTCTTCATTCCCCGTCTTATTGACCAAACCGTCTATAACTTTCCTTCCCTCTAAAATTTTTAAAAAAATGAGGATTTTTCTATATTTCCTAGAATATTTTCTAATACCCCAAATCTGTTGGACCCATCAATACCTGCCAATCGATCGACTTCCTGATTGGAAATTGAAAAATGATGGAAACATCGGTCCATCTTACGGTCAACCCGAGCAAATTCGTATTTCCTATGGAGGAGACCCATCGGTTTCATTTGTGACGTGGCAAACATTCGATGATACATTACAGTCWATTGTGGAGTACGGTAGTGATTGGAAATTTCTGAATCAATCAGTTTTGGGACGATGTTCCGTTTTCTTGGATCGAAATAAGAATAGTGTGTGGAGATATATCCATCGAGCCAATTTGACGGCTCTGGTACCCGGACAAACTTATTGTTAGTTTTTAAAATTTTCATAATCTGAAAATCCAAAAAATTGGGATCATTTTGAGCCAAAAAACATAAAAATCGGATGAAAATTAAGATATTTATAGAAAGTTGAAATTTTTTCTAAAAATTGAAATTTTCAAAATTTTCGAAAAAATCAAAATTTTCCAAATATTGTCATTTTTATACTCATTCGAATTTTCTCGAAATTTTAAATTGAACATTTTAAATTTTAAGAGTCTTGACACAAAAATGAACGTAATACAGTAGTTTGAAAATTGACTTTTTGATGAAAAATGGGATTTTTTTTCAAAAATCATCGCTATTTTGATTTTTAGCAAAGATTTTTTTTTTGAAAATTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCTAATACCCCAAATCTGT</pcr_primer_p1>
		<pcr_primer_p2>GTCCCAAAACTGATTGATTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCTAATACCCCAAATCTGTTGGACCCATCAATACCTGCCAATCGATCGACTTCCTGATTGGAAATTGAAAAATGATGGAAACATCGGTCCATCTTACGGTCAACCCGAGCAAATTCGTATTTCCTATGGAGGAGACCCATCGGTTTCATTTGTGACGTGGCAAACATTCGATGATACATTACAGTCTATTGTGGAGTACGGTAGTGATTGGAAATTTCTGAATCAATCAGTTTTGGGAC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCTAATACCCCAAATCTGTTGGACCCATCAATACCTGCCAATCGATCGACTTCCTGATTGGAAATTGAAAAATGATGGAAACATCGGTCCATCTTACGGTCAACCCGAGCAAATTCGTATTTCCTATGGAGGAGACCCATCGGTTTCATTTGTGACGTGGCAAACATTCGATGATACATTACAGTCWATTGTGGAGTACGGTAGTGATTGGAAATTTCTGAATCAATCAGTTTTGGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12874</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>264788</contig_pos>
        <strand>-</strand>
        <context>ATTGGTAAAA[A/G]CGATTTTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATCTTTGTTTTCTCCAAGTCTTCTAAATCTAGACAAAATATTGGTAAAA</left_flank>
        <right_flank>CGATTTTTGAAATTTTAAAATTGTTTTCAATTCTTTTGAAAATAATTCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGACGAAATTTTGATAGTGGAATGATAAAAATCCAAGGTTTTCAAGTTCGACGAGTTTCTGAAAAAAACAATTTTATTTGAAAATTCAGAAATTCGAGAATTCAAAAACCCACATTTACAAACTCCATCAAATCCTCTACAGTAATCTGGATTACTGTAACATCAACATCCCGAATTCCCAAAAATTCTTGAATTTTTCGATTCACAATGAATTTTCCAATTTCCAAATCTTCCAAGTTTTCCAAAATTTTTGAATCGATTTCAAGAATTTCAGCATTTTTAGACACTCGATCAAATGGATTAATTTTCAAGCTTTTCAAAAAATTCAAATCCAAAAATTGGAAAATTTCCAGAATTTCAGGCTGGTTACAATAGATTTCTTTGATTTTTAGTGAATTTTTTGTTCCGCGGGAATTCAAAATTTTCGAAAAAATTTCGAAAAATTCCGGTATCTTTGTTTTCTCCAAGTCTTCTAAATCTAGACAAAATATTGGTAAAATCGATTTTTGAAATTTTAAAATTGTTTTCAATTCTTTTGAAAATAATTCCAGAGATTTTTCATCTTCCAATCGATATTTGATAGTTTTTTCAGACTTTTCAGAATTTGGAAATTCCAAGATCATCTGAAATTTTTCAGAAGTTTTCATGATTGCCAGTGTTGAAACATTGGCTTCTGGTTTGGCTCGGTCGATAAAATTCCGGAAGTTTCGAGAAACTTTTCGGAGGGAATGGCTGAAAATTTGAATAACATTACCGTAAACACTCTGATAGAACGCCACCCGGACCGCTCAATTTTTTTTTTGGCTCAATTTTTTTTTCAAAAACTCACATTTCTAAAAATCCGCACTTTTTCAAAATTTGTGCCATCACATCTTCAGGAATTTTAGAAAACGTTGTTTCAGAAGTCATTAATTTTTCGTTGAATCTGAAAATTTTAATTTTTTTTTGAAAATTTCGATTTTTTTACAATTGCGAAATATTTCTCAAAATTTAGTGTTTG</canonical>
            <polymorphic>CGACGAAATTTTGATAGTGGAATGATAAAAATCCAAGGTTTTCAAGTTCGACGAGTTTCTGAAAAAAACAATTTTATTTGAAAATTCAGAAATTCGAGAATTCAAAAACCCACATTTACAAACTCCATCAAATCCTCTACAGTAATCTGGATTACTGTAACATCAACATCCCGAATTCCCAAAAATTCTTGAATTTTTCGATTCACAATGAATTTTCCAATTTCCAAATCTTCCAAGTTTTCCAAAATTTTTGAATCGATTTCAAGAATTTCAGCATTTTTAGACACTCGATCAAATGGATTAATTTTCAAGCTTTTCAAAAAATTCAAATCCAAAAATTGGAAAATTTCCAGAATTTCAGGCTGGTTACAATAGATTTCTTTGATTTTTAGTGAATTTTTTGTTCCGCGGGAATTCAAAATTTTCGAAAAAATTTCGAAAAATTCCGGTATCTTTGTTTTCTCCAAGTCTTCTAAATCTAGACAAAATATTGGTAAAARCGATTTTTGAAATTTTAAAATTGTTTTCAATTCTTTTGAAAATAATTCCAGAGATTTTTCATCTTCCAATCGATATTTGATAGTTTTTTCAGACTTTTCAGAATTTGGAAATTCCAAGATCATCTGAAATTTTTCAGAAGTTTTCATGATTGCCAGTGTTGAAACATTGGCTTCTGGTTTGGCTCGGTCGATAAAATTCCGGAAGTTTCGAGAAACTTTTCGGAGGGAATGGCTGAAAATTTGAATAACATTACCGTAAACACTCTGATAGAACGCCACCCGGACCGCTCAATTTTTTTTTTGGCTCAATTTTTTTTTCAAAAACTCACATTTCTAAAAATCCGCACTTTTTCAAAATTTGTGCCATCACATCTTCAGGAATTTTAGAAAACGTTGTTTCAGAAGTCATTAATTTTTCGTTGAATCTGAAAATTTTAATTTTTTTTTGAAAATTTCGATTTTTTTACAATTGCGAAATATTTCTCAAAATTTAGTGTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>430 256 244 70</canonical_bands>
                <polymorphic_bands>430 314 256</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>247 137 118 104 70 64 58 49 46 44 32 20 11</canonical_bands>
                <polymorphic_bands>247 137 134 118 104 58 49 46 44 32 20 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGGCTGGTTACAATAGATTTC</pcr_primer_p1>
		<pcr_primer_p2>CAAATTCTGAAAAGTCTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAGGCTGGTTACAATAGATTTCTTTGATTTTTAGTGAATTTTTTGTTCCGCGGGAATTCAAAATTTTCGAAAAAATTTCGAAAAATTCCGGTATCTTTGTTTTCTCCAAGTCTTCTAAATCTAGACAAAATATTGGTAAAATCGATTTTTGAAATTTTAAAATTGTTTTCAATTCTTTTGAAAATAATTCCAGAGATTTTTCATCTTCCAATCGATATTTGATAGTTTTTTCAGACTTTTCAGAATTTG</canonical_amplicon>
		<polymorphic_amplicon>CAGGCTGGTTACAATAGATTTCTTTGATTTTTAGTGAATTTTTTGTTCCGCGGGAATTCAAAATTTTCGAAAAAATTTCGAAAAATTCCGGTATCTTTGTTTTCTCCAAGTCTTCTAAATCTAGACAAAATATTGGTAAAARCGATTTTTGAAATTTTAAAATTGTTTTCAATTCTTTTGAAAATAATTCCAGAGATTTTTCATCTTCCAATCGATATTTGATAGTTTTTTCAGACTTTTCAGAATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12875</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>264600</contig_pos>
        <strand>-</strand>
        <context>TAATTTTCAA[C/T]CTTTTCAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAAGAATTTCAGCATTTTTAGACACTCGATCAAATGGATTAATTTTCAA</left_flank>
        <right_flank>CTTTTCAAAAAATTCAAATCCAAAAATTGGAAAATTTCCAGAATTTCAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCATTCTTTCAAGAACACTTTCAATTGTAACAAAACGCAAATCAATTTTTTTGCGTTGTGAATAATGACTGATTTCCAAAAGTTTAGTGGAATTCGGCACTTGGACCATCCATCGAGCGAATTCTCCAGTTAAATTCAAATTTCCATGATTCACAGGTCCCAGGCGATTCAAAATTTGTTGGTCTCCGACGAAATTTTGATAGTGGAATGATAAAAATCCAAGGTTTTCAAGTTCGACGAGTTTCTGAAAAAAACAATTTTATTTGAAAATTCAGAAATTCGAGAATTCAAAAACCCACATTTACAAACTCCATCAAATCCTCTACAGTAATCTGGATTACTGTAACATCAACATCCCGAATTCCCAAAAATTCTTGAATTTTTCGATTCACAATGAATTTTCCAATTTCCAAATCTTCCAAGTTTTCCAAAATTTTTGAATCGATTTCAAGAATTTCAGCATTTTTAGACACTCGATCAAATGGATTAATTTTCAAGCTTTTCAAAAAATTCAAATCCAAAAATTGGAAAATTTCCAGAATTTCAGGCTGGTTACAATAGATTTCTTTGATTTTTAGTGAATTTTTTGTTCCGCGGGAATTCAAAATTTTCGAAAAAATTTCGAAAAATTCCGGTATCTTTGTTTTCTCCAAGTCTTCTAAATCTAGACAAAATATTGGTAAAATCGATTTTTGAAATTTTAAAATTGTTTTCAATTCTTTTGAAAATAATTCCAGAGATTTTTCATCTTCCAATCGATATTTGATAGTTTTTTCAGACTTTTCAGAATTTGGAAATTCCAAGATCATCTGAAATTTTTCAGAAGTTTTCATGATTGCCAGTGTTGAAACATTGGCTTCTGGTTTGGCTCGGTCGATAAAATTCCGGAAGTTTCGAGAAACTTTTCGGAGGGAATGGCTGAAAATTTGAATAACATTACCGTAAACACTCTGATAGAACGCCACCCGGACCGCTCAATTTTTTTTTTGGCTCAATTT</canonical>
            <polymorphic>TCTCATTCTTTCAAGAACACTTTCAATTGTAACAAAACGCAAATCAATTTTTTTGCGTTGTGAATAATGACTGATTTCCAAAAGTTTAGTGGAATTCGGCACTTGGACCATCCATCGAGCGAATTCTCCAGTTAAATTCAAATTTCCATGATTCACAGGTCCCAGGCGATTCAAAATTTGTTGGTCTCCGACGAAATTTTGATAGTGGAATGATAAAAATCCAAGGTTTTCAAGTTCGACGAGTTTCTGAAAAAAACAATTTTATTTGAAAATTCAGAAATTCGAGAATTCAAAAACCCACATTTACAAACTCCATCAAATCCTCTACAGTAATCTGGATTACTGTAACATCAACATCCCGAATTCCCAAAAATTCTTGAATTTTTCGATTCACAATGAATTTTCCAATTTCCAAATCTTCCAAGTTTTCCAAAATTTTTGAATCGATTTCAAGAATTTCAGCATTTTTAGACACTCGATCAAATGGATTAATTTTCAAYCTTTTCAAAAAATTCAAATCCAAAAATTGGAAAATTTCCAGAATTTCAGGCTGGTTACAATAGATTTCTTTGATTTTTAGTGAATTTTTTGTTCCGCGGGAATTCAAAATTTTCGAAAAAATTTCGAAAAATTCCGGTATCTTTGTTTTCTCCAAGTCTTCTAAATCTAGACAAAATATTGGTAAAATCGATTTTTGAAATTTTAAAATTGTTTTCAATTCTTTTGAAAATAATTCCAGAGATTTTTCATCTTCCAATCGATATTTGATAGTTTTTTCAGACTTTTCAGAATTTGGAAATTCCAAGATCATCTGAAATTTTTCAGAAGTTTTCATGATTGCCAGTGTTGAAACATTGGCTTCTGGTTTGGCTCGGTCGATAAAATTCCGGAAGTTTCGAGAAACTTTTCGGAGGGAATGGCTGAAAATTTGAATAACATTACCGTAAACACTCTGATAGAACGCCACCCGGACCGCTCAATTTTTTTTTTGGCTCAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>500 308 72 50 50 12 8</canonical_bands>
                <polymorphic_bands>550 308 72 50 12 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATCAAATCCTCTACAGTAATC</pcr_primer_p1>
		<pcr_primer_p2>ATCTATTGTAACCAGCCTGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CCATCAAATCCTCTACAGTAATCTGGATTACTGTAACATCAACATCCCGAATTCCCAAAAATTCTTGAATTTTTCGATTCACAATGAATTTTCCAATTTCCAAATCTTCCAAGTTTTCCAAAATTTTTGAATCGATTTCAAGAATTTCAGCATTTTTAGACACTCGATCAAATGGATTAATTTTCAAGCTTTTCAAAAAATTCAAATCCAAAAATTGGAAAATTTCCAGAATTTCAGGCTGGTTACAATAGAT</canonical_amplicon>
		<polymorphic_amplicon>CCATCAAATCCTCTACAGTAATCTGGATTACTGTAACATCAACATCCCGAATTCCCAAAAATTCTTGAATTTTTCGATTCACAATGAATTTTCCAATTTCCAAATCTTCCAAGTTTTCCAAAATTTTTGAATCGATTTCAAGAATTTCAGCATTTTTAGACACTCGATCAAATGGATTAATTTTCAAYCTTTTCAAAAAATTCAAATCCAAAAATTGGAAAATTTCCAGAATTTCAGGCTGGTTACAATAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12878</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>264552</contig_pos>
        <strand>-</strand>
        <context>AATCGATTTC[G/T]AGAATTTCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCCAATTTCCAAATCTTCCAAGTTTTCCAAAATTTTTGAATCGATTTC</left_flank>
        <right_flank>AGAATTTCAGCATTTTTAGACACTCGATCAAATGGATTAATTTTCAAGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGGGCATTTTTTTTCAGAAAAAATAAATATTTATTCAATTCATAACTCTCATTCTTTCAAGAACACTTTCAATTGTAACAAAACGCAAATCAATTTTTTTGCGTTGTGAATAATGACTGATTTCCAAAAGTTTAGTGGAATTCGGCACTTGGACCATCCATCGAGCGAATTCTCCAGTTAAATTCAAATTTCCATGATTCACAGGTCCCAGGCGATTCAAAATTTGTTGGTCTCCGACGAAATTTTGATAGTGGAATGATAAAAATCCAAGGTTTTCAAGTTCGACGAGTTTCTGAAAAAAACAATTTTATTTGAAAATTCAGAAATTCGAGAATTCAAAAACCCACATTTACAAACTCCATCAAATCCTCTACAGTAATCTGGATTACTGTAACATCAACATCCCGAATTCCCAAAAATTCTTGAATTTTTCGATTCACAATGAATTTTCCAATTTCCAAATCTTCCAAGTTTTCCAAAATTTTTGAATCGATTTCAAGAATTTCAGCATTTTTAGACACTCGATCAAATGGATTAATTTTCAAGCTTTTCAAAAAATTCAAATCCAAAAATTGGAAAATTTCCAGAATTTCAGGCTGGTTACAATAGATTTCTTTGATTTTTAGTGAATTTTTTGTTCCGCGGGAATTCAAAATTTTCGAAAAAATTTCGAAAAATTCCGGTATCTTTGTTTTCTCCAAGTCTTCTAAATCTAGACAAAATATTGGTAAAATCGATTTTTGAAATTTTAAAATTGTTTTCAATTCTTTTGAAAATAATTCCAGAGATTTTTCATCTTCCAATCGATATTTGATAGTTTTTTCAGACTTTTCAGAATTTGGAAATTCCAAGATCATCTGAAATTTTTCAGAAGTTTTCATGATTGCCAGTGTTGAAACATTGGCTTCTGGTTTGGCTCGGTCGATAAAATTCCGGAAGTTTCGAGAAACTTTTCGGAGGGAATGGCTGAAAATTTGAATAACATTACCGTAAACACT</canonical>
            <polymorphic>TTCGGGCATTTTTTTTCAGAAAAAATAAATATTTATTCAATTCATAACTCTCATTCTTTCAAGAACACTTTCAATTGTAACAAAACGCAAATCAATTTTTTTGCGTTGTGAATAATGACTGATTTCCAAAAGTTTAGTGGAATTCGGCACTTGGACCATCCATCGAGCGAATTCTCCAGTTAAATTCAAATTTCCATGATTCACAGGTCCCAGGCGATTCAAAATTTGTTGGTCTCCGACGAAATTTTGATAGTGGAATGATAAAAATCCAAGGTTTTCAAGTTCGACGAGTTTCTGAAAAAAACAATTTTATTTGAAAATTCAGAAATTCGAGAATTCAAAAACCCACATTTACAAACTCCATCAAATCCTCTACAGTAATCTGGATTACTGTAACATCAACATCCCGAATTCCCAAAAATTCTTGAATTTTTCGATTCACAATGAATTTTCCAATTTCCAAATCTTCCAAGTTTTCCAAAATTTTTGAATCGATTTCKAGAATTTCAGCATTTTTAGACACTCGATCAAATGGATTAATTTTCAAGCTTTTCAAAAAATTCAAATCCAAAAATTGGAAAATTTCCAGAATTTCAGGCTGGTTACAATAGATTTCTTTGATTTTTAGTGAATTTTTTGTTCCGCGGGAATTCAAAATTTTCGAAAAAATTTCGAAAAATTCCGGTATCTTTGTTTTCTCCAAGTCTTCTAAATCTAGACAAAATATTGGTAAAATCGATTTTTGAAATTTTAAAATTGTTTTCAATTCTTTTGAAAATAATTCCAGAGATTTTTCATCTTCCAATCGATATTTGATAGTTTTTTCAGACTTTTCAGAATTTGGAAATTCCAAGATCATCTGAAATTTTTCAGAAGTTTTCATGATTGCCAGTGTTGAAACATTGGCTTCTGGTTTGGCTCGGTCGATAAAATTCCGGAAGTTTCGAGAAACTTTTCGGAGGGAATGGCTGAAAATTTGAATAACATTACCGTAAACACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATCAAATCCTCTACAGTAATC</pcr_primer_p1>
		<pcr_primer_p2>ATCTATTGTAACCAGCCTGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CCATCAAATCCTCTACAGTAATCTGGATTACTGTAACATCAACATCCCGAATTCCCAAAAATTCTTGAATTTTTCGATTCACAATGAATTTTCCAATTTCCAAATCTTCCAAGTTTTCCAAAATTTTTGAATCGATTTCAAGAATTTCAGCATTTTTAGACACTCGATCAAATGGATTAATTTTCAAGCTTTTCAAAAAATTCAAATCCAAAAATTGGAAAATTTCCAGAATTTCAGGCTGGTTACAATAGAT</canonical_amplicon>
		<polymorphic_amplicon>CCATCAAATCCTCTACAGTAATCTGGATTACTGTAACATCAACATCCCGAATTCCCAAAAATTCTTGAATTTTTCGATTCACAATGAATTTTCCAATTTCCAAATCTTCCAAGTTTTCCAAAATTTTTGAATCGATTTCKAGAATTTCAGCATTTTTAGACACTCGATCAAATGGATTAATTTTCAAGCTTTTCAAAAAATTCAAATCCAAAAATTGGAAAATTTCCAGAATTTCAGGCTGGTTACAATAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12879</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>264534</contig_pos>
        <strand>-</strand>
        <context>AGTTTTCCAA[G/T]ATTTTTGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCGATTCACAATGAATTTTCCAATTTCCAAATCTTCCAAGTTTTCCAA</left_flank>
        <right_flank>ATTTTTGAATCGATTTCAAGAATTTCAGCATTTTTAGACACTCGATCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGGTGACTTGACTCATTTTCGGGCATTTTTTTTCAGAAAAAATAAATATTTATTCAATTCATAACTCTCATTCTTTCAAGAACACTTTCAATTGTAACAAAACGCAAATCAATTTTTTTGCGTTGTGAATAATGACTGATTTCCAAAAGTTTAGTGGAATTCGGCACTTGGACCATCCATCGAGCGAATTCTCCAGTTAAATTCAAATTTCCATGATTCACAGGTCCCAGGCGATTCAAAATTTGTTGGTCTCCGACGAAATTTTGATAGTGGAATGATAAAAATCCAAGGTTTTCAAGTTCGACGAGTTTCTGAAAAAAACAATTTTATTTGAAAATTCAGAAATTCGAGAATTCAAAAACCCACATTTACAAACTCCATCAAATCCTCTACAGTAATCTGGATTACTGTAACATCAACATCCCGAATTCCCAAAAATTCTTGAATTTTTCGATTCACAATGAATTTTCCAATTTCCAAATCTTCCAAGTTTTCCAAAATTTTTGAATCGATTTCAAGAATTTCAGCATTTTTAGACACTCGATCAAATGGATTAATTTTCAAGCTTTTCAAAAAATTCAAATCCAAAAATTGGAAAATTTCCAGAATTTCAGGCTGGTTACAATAGATTTCTTTGATTTTTAGTGAATTTTTTGTTCCGCGGGAATTCAAAATTTTCGAAAAAATTTCGAAAAATTCCGGTATCTTTGTTTTCTCCAAGTCTTCTAAATCTAGACAAAATATTGGTAAAATCGATTTTTGAAATTTTAAAATTGTTTTCAATTCTTTTGAAAATAATTCCAGAGATTTTTCATCTTCCAATCGATATTTGATAGTTTTTTCAGACTTTTCAGAATTTGGAAATTCCAAGATCATCTGAAATTTTTCAGAAGTTTTCATGATTGCCAGTGTTGAAACATTGGCTTCTGGTTTGGCTCGGTCGATAAAATTCCGGAAGTTTCGAGAAACTTTTCGGAGGGAATGGCTGAAAATTTGAAT</canonical>
            <polymorphic>TCGGTGACTTGACTCATTTTCGGGCATTTTTTTTCAGAAAAAATAAATATTTATTCAATTCATAACTCTCATTCTTTCAAGAACACTTTCAATTGTAACAAAACGCAAATCAATTTTTTTGCGTTGTGAATAATGACTGATTTCCAAAAGTTTAGTGGAATTCGGCACTTGGACCATCCATCGAGCGAATTCTCCAGTTAAATTCAAATTTCCATGATTCACAGGTCCCAGGCGATTCAAAATTTGTTGGTCTCCGACGAAATTTTGATAGTGGAATGATAAAAATCCAAGGTTTTCAAGTTCGACGAGTTTCTGAAAAAAACAATTTTATTTGAAAATTCAGAAATTCGAGAATTCAAAAACCCACATTTACAAACTCCATCAAATCCTCTACAGTAATCTGGATTACTGTAACATCAACATCCCGAATTCCCAAAAATTCTTGAATTTTTCGATTCACAATGAATTTTCCAATTTCCAAATCTTCCAAGTTTTCCAAKATTTTTGAATCGATTTCAAGAATTTCAGCATTTTTAGACACTCGATCAAATGGATTAATTTTCAAGCTTTTCAAAAAATTCAAATCCAAAAATTGGAAAATTTCCAGAATTTCAGGCTGGTTACAATAGATTTCTTTGATTTTTAGTGAATTTTTTGTTCCGCGGGAATTCAAAATTTTCGAAAAAATTTCGAAAAATTCCGGTATCTTTGTTTTCTCCAAGTCTTCTAAATCTAGACAAAATATTGGTAAAATCGATTTTTGAAATTTTAAAATTGTTTTCAATTCTTTTGAAAATAATTCCAGAGATTTTTCATCTTCCAATCGATATTTGATAGTTTTTTCAGACTTTTCAGAATTTGGAAATTCCAAGATCATCTGAAATTTTTCAGAAGTTTTCATGATTGCCAGTGTTGAAACATTGGCTTCTGGTTTGGCTCGGTCGATAAAATTCCGGAAGTTTCGAGAAACTTTTCGGAGGGAATGGCTGAAAATTTGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>158 91 76 75 69 67 56 43 41 35 34 29 22 21 20 19 18 18 13 12 10 10 9 9 8 8 8 8 7 6</canonical_bands>
                <polymorphic_bands>158 91 76 75 69 67 56 56 43 41 34 29 22 20 19 18 18 13 12 10 10 9 9 8 8 8 8 7 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>75 69 67 63 58 56 47 43 41 36 34 34 29 27 21 21 20 20 19 18 18 15 14 13 13 12 10 10 10 9 9 8 8 8 8 8 8 8 7 6</canonical_bands>
                <polymorphic_bands>75 69 67 63 58 56 48 47 43 41 36 34 34 29 21 20 20 19 18 18 15 14 13 13 12 10 10 10 9 9 8 8 8 8 8 8 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATCAAATCCTCTACAGTAATC</pcr_primer_p1>
		<pcr_primer_p2>ATCTATTGTAACCAGCCTGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CCATCAAATCCTCTACAGTAATCTGGATTACTGTAACATCAACATCCCGAATTCCCAAAAATTCTTGAATTTTTCGATTCACAATGAATTTTCCAATTTCCAAATCTTCCAAGTTTTCCAAAATTTTTGAATCGATTTCAAGAATTTCAGCATTTTTAGACACTCGATCAAATGGATTAATTTTCAAGCTTTTCAAAAAATTCAAATCCAAAAATTGGAAAATTTCCAGAATTTCAGGCTGGTTACAATAGAT</canonical_amplicon>
		<polymorphic_amplicon>CCATCAAATCCTCTACAGTAATCTGGATTACTGTAACATCAACATCCCGAATTCCCAAAAATTCTTGAATTTTTCGATTCACAATGAATTTTCCAATTTCCAAATCTTCCAAGTTTTCCAAKATTTTTGAATCGATTTCAAGAATTTCAGCATTTTTAGACACTCGATCAAATGGATTAATTTTCAAGCTTTTCAAAAAATTCAAATCCAAAAATTGGAAAATTTCCAGAATTTCAGGCTGGTTACAATAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12881</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>264468</contig_pos>
        <strand>-</strand>
        <context>CCCGAATTCC[C/G]AAAAATTCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAATCCTCTACAGTAATCTGGATTACTGTAACATCAACATCCCGAATTCC</left_flank>
        <right_flank>AAAAATTCTTGAATTTTTCGATTCACAATGAATTTTCCAATTTCCAAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTGTTTTTGAATTTTCGAATTTTCTGAATTAATTGAAAATCCACGAAAAATCAATGACGTATTTTCGGTGACTTGACTCATTTTCGGGCATTTTTTTTCAGAAAAAATAAATATTTATTCAATTCATAACTCTCATTCTTTCAAGAACACTTTCAATTGTAACAAAACGCAAATCAATTTTTTTGCGTTGTGAATAATGACTGATTTCCAAAAGTTTAGTGGAATTCGGCACTTGGACCATCCATCGAGCGAATTCTCCAGTTAAATTCAAATTTCCATGATTCACAGGTCCCAGGCGATTCAAAATTTGTTGGTCTCCGACGAAATTTTGATAGTGGAATGATAAAAATCCAAGGTTTTCAAGTTCGACGAGTTTCTGAAAAAAACAATTTTATTTGAAAATTCAGAAATTCGAGAATTCAAAAACCCACATTTACAAACTCCATCAAATCCTCTACAGTAATCTGGATTACTGTAACATCAACATCCCGAATTCCCAAAAATTCTTGAATTTTTCGATTCACAATGAATTTTCCAATTTCCAAATCTTCCAAGTTTTCCAAAATTTTTGAATCGATTTCAAGAATTTCAGCATTTTTAGACACTCGATCAAATGGATTAATTTTCAAGCTTTTCAAAAAATTCAAATCCAAAAATTGGAAAATTTCCAGAATTTCAGGCTGGTTACAATAGATTTCTTTGATTTTTAGTGAATTTTTTGTTCCGCGGGAATTCAAAATTTTCGAAAAAATTTCGAAAAATTCCGGTATCTTTGTTTTCTCCAAGTCTTCTAAATCTAGACAAAATATTGGTAAAATCGATTTTTGAAATTTTAAAATTGTTTTCAATTCTTTTGAAAATAATTCCAGAGATTTTTCATCTTCCAATCGATATTTGATAGTTTTTTCAGACTTTTCAGAATTTGGAAATTCCAAGATCATCTGAAATTTTTCAGAAGTTTTCATGATTGCCAGTGTTGAAACATTGGCTTCTGGTTT</canonical>
            <polymorphic>TCGTGTTTTTGAATTTTCGAATTTTCTGAATTAATTGAAAATCCACGAAAAATCAATGACGTATTTTCGGTGACTTGACTCATTTTCGGGCATTTTTTTTCAGAAAAAATAAATATTTATTCAATTCATAACTCTCATTCTTTCAAGAACACTTTCAATTGTAACAAAACGCAAATCAATTTTTTTGCGTTGTGAATAATGACTGATTTCCAAAAGTTTAGTGGAATTCGGCACTTGGACCATCCATCGAGCGAATTCTCCAGTTAAATTCAAATTTCCATGATTCACAGGTCCCAGGCGATTCAAAATTTGTTGGTCTCCGACGAAATTTTGATAGTGGAATGATAAAAATCCAAGGTTTTCAAGTTCGACGAGTTTCTGAAAAAAACAATTTTATTTGAAAATTCAGAAATTCGAGAATTCAAAAACCCACATTTACAAACTCCATCAAATCCTCTACAGTAATCTGGATTACTGTAACATCAACATCCCGAATTCCSAAAAATTCTTGAATTTTTCGATTCACAATGAATTTTCCAATTTCCAAATCTTCCAAGTTTTCCAAAATTTTTGAATCGATTTCAAGAATTTCAGCATTTTTAGACACTCGATCAAATGGATTAATTTTCAAGCTTTTCAAAAAATTCAAATCCAAAAATTGGAAAATTTCCAGAATTTCAGGCTGGTTACAATAGATTTCTTTGATTTTTAGTGAATTTTTTGTTCCGCGGGAATTCAAAATTTTCGAAAAAATTTCGAAAAATTCCGGTATCTTTGTTTTCTCCAAGTCTTCTAAATCTAGACAAAATATTGGTAAAATCGATTTTTGAAATTTTAAAATTGTTTTCAATTCTTTTGAAAATAATTCCAGAGATTTTTCATCTTCCAATCGATATTTGATAGTTTTTTCAGACTTTTCAGAATTTGGAAATTCCAAGATCATCTGAAATTTTTCAGAAGTTTTCATGATTGCCAGTGTTGAAACATTGGCTTCTGGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATCAAATCCTCTACAGTAATC</pcr_primer_p1>
		<pcr_primer_p2>ATCTATTGTAACCAGCCTGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CCATCAAATCCTCTACAGTAATCTGGATTACTGTAACATCAACATCCCGAATTCCCAAAAATTCTTGAATTTTTCGATTCACAATGAATTTTCCAATTTCCAAATCTTCCAAGTTTTCCAAAATTTTTGAATCGATTTCAAGAATTTCAGCATTTTTAGACACTCGATCAAATGGATTAATTTTCAAGCTTTTCAAAAAATTCAAATCCAAAAATTGGAAAATTTCCAGAATTTCAGGCTGGTTACAATAGAT</canonical_amplicon>
		<polymorphic_amplicon>CCATCAAATCCTCTACAGTAATCTGGATTACTGTAACATCAACATCCCGAATTCCSAAAAATTCTTGAATTTTTCGATTCACAATGAATTTTCCAATTTCCAAATCTTCCAAGTTTTCCAAAATTTTTGAATCGATTTCAAGAATTTCAGCATTTTTAGACACTCGATCAAATGGATTAATTTTCAAGCTTTTCAAAAAATTCAAATCCAAAAATTGGAAAATTTCCAGAATTTCAGGCTGGTTACAATAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12895</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>279213</contig_pos>
        <strand>+</strand>
        <context>AGATATTTTC[A/G]TTCATACGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATCGATTTTTCGCATTTCAACGAGCTGGAATGTATGAGAGATATTTTC</left_flank>
        <right_flank>TTCATACGAGGATTGATAACTTGTATCCAGTGATTGCGTATGATATGGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCAAAATTTTAAATTTCGAAAAGTTTGGTGTAAAAATAAAAAAGTTATGGGAACTTTTGGAAATATCGACTTCTATAAATGTTCCATGTTTATACTCATCTTGAAGCTTGTATCACGCTGAAAATGCACTATAACACTTTTCAAACAAAATTTCGATCATTTTCAGATCCGAAAACAGTTTCGACACTTCCCGGATTCCACGAAAATTCATTTCATCTGAAAATCTTTTGAACTTTGGACTCTCAATTCTCAAAAATCTCCTTCACGATTCAATCGAAATCAATGCAATCGAATGGGATTTAGATGATTTCTTATTGGAAGACTCAAAAAATCCTGAAAATTATCTGAAAGTTTCTCAAAAAATTTTTGGATTCCAAAAATTTCATGTCAAGGAAATGGTGTCAACTCCGAGATCCGAGGAAACATATAAATTTTTCAATCGGTTTTTTATCGATTTTTCGCATTTCAACGAGCTGGAATGTATGAGAGATATTTTCGTTCATACGAGGATTGATAACTTGTATCCAGTGATTGCGTATGATATGGATGTTCCATTTTGTGGAAAATCGAATTGTAAGATTTTATGGGGTTTTCGAAAGCTGAAAATTGGTAAAAATTCGAGTTCAGCTCGTCAAGACGGTCAGAATGAGTATAAACATGACCTGCTTGACGCGTTTTTGGTACCTTGACGCATTTTCGGTGCCTTGACGTATTTTTGGCGCATTGCCGATTTTTTCGGCTCTGGTGTGTTTTTCACGCCTTGACGCATTTTTAGTGCCCTTGACGCATGTTACGTGTTTTGACGCATTTTCGGTGCCCTGACACATTTTTTGTGTCTTGACGCAAGTTTGGTGCCTTGCCGCATTTTCAGTGCATTGATGCATTCTTGGTGCCTCGATACGGTTTTTGTGCCTTGCCGCGTTTTCGGAGTCTTGACGCATTTTTTGTGCCTTGACGCATTTTCAGCCCTATCGTGTTTTTTGTGCTTTCACGCGTTT</canonical>
            <polymorphic>ATTCAAAATTTTAAATTTCGAAAAGTTTGGTGTAAAAATAAAAAAGTTATGGGAACTTTTGGAAATATCGACTTCTATAAATGTTCCATGTTTATACTCATCTTGAAGCTTGTATCACGCTGAAAATGCACTATAACACTTTTCAAACAAAATTTCGATCATTTTCAGATCCGAAAACAGTTTCGACACTTCCCGGATTCCACGAAAATTCATTTCATCTGAAAATCTTTTGAACTTTGGACTCTCAATTCTCAAAAATCTCCTTCACGATTCAATCGAAATCAATGCAATCGAATGGGATTTAGATGATTTCTTATTGGAAGACTCAAAAAATCCTGAAAATTATCTGAAAGTTTCTCAAAAAATTTTTGGATTCCAAAAATTTCATGTCAAGGAAATGGTGTCAACTCCGAGATCCGAGGAAACATATAAATTTTTCAATCGGTTTTTTATCGATTTTTCGCATTTCAACGAGCTGGAATGTATGAGAGATATTTTCRTTCATACGAGGATTGATAACTTGTATCCAGTGATTGCGTATGATATGGATGTTCCATTTTGTGGAAAATCGAATTGTAAGATTTTATGGGGTTTTCGAAAGCTGAAAATTGGTAAAAATTCGAGTTCAGCTCGTCAAGACGGTCAGAATGAGTATAAACATGACCTGCTTGACGCGTTTTTGGTACCTTGACGCATTTTCGGTGCCTTGACGTATTTTTGGCGCATTGCCGATTTTTTCGGCTCTGGTGTGTTTTTCACGCCTTGACGCATTTTTAGTGCCCTTGACGCATGTTACGTGTTTTGACGCATTTTCGGTGCCCTGACACATTTTTTGTGTCTTGACGCAAGTTTGGTGCCTTGCCGCATTTTCAGTGCATTGATGCATTCTTGGTGCCTCGATACGGTTTTTGTGCCTTGCCGCGTTTTCGGAGTCTTGACGCATTTTTTGTGCCTTGACGCATTTTCAGCCCTATCGTGTTTTTTGTGCTTTCACGCGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTATTGGAAGACTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAATGGAACATCCATATCATAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTATTGGAAGACTCAAAAAATCCTGAAAATTATCTGAAAGTTTCTCAAAAAATTTTTGGATTCCAAAAATTTCATGTCAAGGAAATGGTGTCAACTCCGAGATCCGAGGAAACATATAAATTTTTCAATCGGTTTTTTATCGATTTTTCGCATTTCAACGAGCTGGAATGTATGAGAGATATTTTCGTTCATACGAGGATTGATAACTTGTATCCAGTGATTGCGTATGATATGGATGTTCCATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTATTGGAAGACTCAAAAAATCCTGAAAATTATCTGAAAGTTTCTCAAAAAATTTTTGGATTCCAAAAATTTCATGTCAAGGAAATGGTGTCAACTCCGAGATCCGAGGAAACATATAAATTTTTCAATCGGTTTTTTATCGATTTTTCGCATTTCAACGAGCTGGAATGTATGAGAGATATTTTCRTTCATACGAGGATTGATAACTTGTATCCAGTGATTGCGTATGATATGGATGTTCCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12896</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>314578</contig_pos>
        <strand>+</strand>
        <context>ATAGTGAGTA[A/T]AGACGCAGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGCACGTTTGACATAGCAACCGTATTACAGCAATTAGAAATAGTGAGTA</left_flank>
        <right_flank>AGACGCAGAGAAGGCAGGCACTCTAATTGGCTGCGTCTCGCAGCTAGAAT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTTTAAATAATTTTCAAGAATTTTTAAATCGATTTTCAGTATTTTTCAGACACCTGTGTATCCCATCACTCATTACTTTTACAAAATGGTTTACGCCTTTTATTTGGCAATCATCCTCATCATAATTATCCTCCTGAATCAACATTTACTTTATATTAATTTTCAGAATTTGACCGTTTTTAATTTCCCCAAATTTTCAAATTTTTCAGCATTTTCCTTGTTGCTGCTCCTCTTTTACTTGCTGTGCATTTGGTGCATGTTCATCATATTTTTTTGTCTCTTTTAGCAATTCAAAGATTCATTTTATACTTTTTCCCAAATTTGGAGAAATTCGTTAGTTTTGGATTCAAAACTACCACAAAATTTATCTATTTTATTCATTTTTCATGTTTCATTCCGTTTCCTGCAAGTTTCATCGTTAATATATTTGTTGGGGTTATCCACGGCAGCACGTTTGACATAGCAACCGTATTACAGCAATTAGAAATAGTGAGTAAAGACGCAGAGAAGGCAGGCACTCTAATTGGCTGCGTCTCGCAGCTAGAATAAAAATTCGAAAAACATAAATAAACCTGATTTTAAGTACCTACTACAATCGTTACACTTTCTAAATTTTTAATTTCAAAGTGTTTCAGACATATCATACTTCCTTGAACTGCATTGTCATATCATCTGCACTATTATACATTCCAATACTCATCAGCATCTTTCGTCTTCGTCATTTACCATCCATCGAAAAACACAAACCACACAAATACATTCTCTACCAAACAATCATCCTGGTTTTCTACAAAATTGTAAGATATTTTTTTATTTTTGGCAAGGAGACGCAGATAGTTAGACCATCTGTCTTCTCTGCGTCTCCATGGGAGCGACCTACCGTAAACACTCAAATAGAACGCCACCCGACATGTCAAATTTGAGCCCATGTATCTCATTTTCTGTGAAAAATATCAAAACGTTGTCAACTGATAAAATGTTGCTGTTATCGTGATAA</canonical>
            <polymorphic>GAATTTTAAATAATTTTCAAGAATTTTTAAATCGATTTTCAGTATTTTTCAGACACCTGTGTATCCCATCACTCATTACTTTTACAAAATGGTTTACGCCTTTTATTTGGCAATCATCCTCATCATAATTATCCTCCTGAATCAACATTTACTTTATATTAATTTTCAGAATTTGACCGTTTTTAATTTCCCCAAATTTTCAAATTTTTCAGCATTTTCCTTGTTGCTGCTCCTCTTTTACTTGCTGTGCATTTGGTGCATGTTCATCATATTTTTTTGTCTCTTTTAGCAATTCAAAGATTCATTTTATACTTTTTCCCAAATTTGGAGAAATTCGTTAGTTTTGGATTCAAAACTACCACAAAATTTATCTATTTTATTCATTTTTCATGTTTCATTCCGTTTCCTGCAAGTTTCATCGTTAATATATTTGTTGGGGTTATCCACGGCAGCACGTTTGACATAGCAACCGTATTACAGCAATTAGAAATAGTGAGTAWAGACGCAGAGAAGGCAGGCACTCTAATTGGCTGCGTCTCGCAGCTAGAATAAAAATTCGAAAAACATAAATAAACCTGATTTTAAGTACCTACTACAATCGTTACACTTTCTAAATTTTTAATTTCAAAGTGTTTCAGACATATCATACTTCCTTGAACTGCATTGTCATATCATCTGCACTATTATACATTCCAATACTCATCAGCATCTTTCGTCTTCGTCATTTACCATCCATCGAAAAACACAAACCACACAAATACATTCTCTACCAAACAATCATCCTGGTTTTCTACAAAATTGTAAGATATTTTTTTATTTTTGGCAAGGAGACGCAGATAGTTAGACCATCTGTCTTCTCTGCGTCTCCATGGGAGCGACCTACCGTAAACACTCAAATAGAACGCCACCCGACATGTCAAATTTGAGCCCATGTATCTCATTTTCTGTGAAAAATATCAAAACGTTGTCAACTGATAAAATGTTGCTGTTATCGTGATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTAATATATTTGTTGGGGTTA</pcr_primer_p1>
		<pcr_primer_p2>ACAATGCAGTTCAAGGAAGTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGTTAATATATTTGTTGGGGTTATCCACGGCAGCACGTTTGACATAGCAACCGTATTACAGCAATTAGAAATAGTGAGTAAAGACGCAGAGAAGGCAGGCACTCTAATTGGCTGCGTCTCGCAGCTAGAATAAAAATTCGAAAAACATAAATAAACCTGATTTTAAGTACCTACTACAATCGTTACACTTTCTAAATTTTTAATTTCAAAGTGTTTCAGACATATCATACTTCCTTGAACTGCATTGT</canonical_amplicon>
		<polymorphic_amplicon>CGTTAATATATTTGTTGGGGTTATCCACGGCAGCACGTTTGACATAGCAACCGTATTACAGCAATTAGAAATAGTGAGTAWAGACGCAGAGAAGGCAGGCACTCTAATTGGCTGCGTCTCGCAGCTAGAATAAAAATTCGAAAAACATAAATAAACCTGATTTTAAGTACCTACTACAATCGTTACACTTTCTAAATTTTTAATTTCAAAGTGTTTCAGACATATCATACTTCCTTGAACTGCATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12897</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>320087</contig_pos>
        <strand>+</strand>
        <context>CAAAAAACGT[A/G]AAAGCAAGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGT</left_flank>
        <right_flank>AAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAAC</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATACACTAATATATACTGGCAATATGACAACGGGCAATATCAGTAATCCCAAGTAAATTAGCCCGAAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAGATAGAAAAGTGCTTTGACGCATTTTTAGTGCCTTGACGCATTTTCAGCGCCTTGGCGCCTTTTAGTGTATTGACGCCTTTTAGTGTATTGGCGCTTTTTCAGTACTTTGACGCATTTCTAGTGCCTCAGAAAATTGGTATTTTCAATATTTTTTCTCAAAAATTTGTCATCTGAAAATGTCAAAAAAAGTGATGTTGAGAAAATTTTTGTATCCTATAATTTTAAGTTTTTCGGGTGCAAATAACGTAAAAATAAAATTTGTCATAAAATTTTTTTCCAAACTCCCATGATTTCTTCAATTTACGACTATGTAGATTCGAATAAAGAGCTAGAAAATGTCCAAAATTTCTGGTCCCTTTCAGATCATTTCAATTTTTTCCTCG</canonical>
            <polymorphic>GAATACACTAATATATACTGGCAATATGACAACGGGCAATATCAGTAATCCCAAGTAAATTAGCCCGAAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTRAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAGATAGAAAAGTGCTTTGACGCATTTTTAGTGCCTTGACGCATTTTCAGCGCCTTGGCGCCTTTTAGTGTATTGACGCCTTTTAGTGTATTGGCGCTTTTTCAGTACTTTGACGCATTTCTAGTGCCTCAGAAAATTGGTATTTTCAATATTTTTTCTCAAAAATTTGTCATCTGAAAATGTCAAAAAAAGTGATGTTGAGAAAATTTTTGTATCCTATAATTTTAAGTTTTTCGGGTGCAAATAACGTAAAAATAAAATTTGTCATAAAATTTTTTTCCAAACTCCCATGATTTCTTCAATTTACGACTATGTAGATTCGAATAAAGAGCTAGAAAATGTCCAAAATTTCTGGTCCCTTTCAGATCATTTCAATTTTTTCCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTCAAGGAACGGAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>AAAGGCGTCAATACACTAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>313</pcr_amplicon_size>
		<canonical_amplicon>TAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAGATAGAAAAGTGCTTTGACGCATTTTTAGTGCCTTGACGCATTTTCAGCGCCTTGGCGCCTTTTAGTGTATTGACGCCTTT</canonical_amplicon>
		<polymorphic_amplicon>TAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTRAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAGATAGAAAAGTGCTTTGACGCATTTTTAGTGCCTTGACGCATTTTCAGCGCCTTGGCGCCTTTTAGTGTATTGACGCCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12898</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>320023</contig_pos>
        <strand>+</strand>
        <context>CCAACACGCR[A/G]AAGTGTGTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCA</left_flank>
        <right_flank>AAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACCCGAGATATAAGTGCGCAAAGTTGAAAGATCACCTCTCTATCCCGTTCTCTATTCGATCGGAATACACTAATATATACTGGCAATATGACAACGGGCAATATCAGTAATCCCAAGTAAATTAGCCCGAAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAGATAGAAAAGTGCTTTGACGCATTTTTAGTGCCTTGACGCATTTTCAGCGCCTTGGCGCCTTTTAGTGTATTGACGCCTTTTAGTGTATTGGCGCTTTTTCAGTACTTTGACGCATTTCTAGTGCCTCAGAAAATTGGTATTTTCAATATTTTTTCTCAAAAATTTGTCATCTGAAAATGTCAAAAAAAGTGATGTTGAGAAAATTTTTGTATCCTATAATTTTAAGTTTTTCGGGTGCAAATAACGTAAAAATAAAATTTGTCATAAAATTTTTTTCCAAACTCCCATGATTTCTTCAATTTACGACTATGTAGATTCG</canonical>
            <polymorphic>TAACCCGAGATATAAGTGCGCAAAGTTGAAAGATCACCTCTCTATCCCGTTCTCTATTCGATCGGAATACACTAATATATACTGGCAATATGACAACGGGCAATATCAGTAATCCCAAGTAAATTAGCCCGAAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCARAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAGATAGAAAAGTGCTTTGACGCATTTTTAGTGCCTTGACGCATTTTCAGCGCCTTGGCGCCTTTTAGTGTATTGACGCCTTTTAGTGTATTGGCGCTTTTTCAGTACTTTGACGCATTTCTAGTGCCTCAGAAAATTGGTATTTTCAATATTTTTTCTCAAAAATTTGTCATCTGAAAATGTCAAAAAAAGTGATGTTGAGAAAATTTTTGTATCCTATAATTTTAAGTTTTTCGGGTGCAAATAACGTAAAAATAAAATTTGTCATAAAATTTTTTTCCAAACTCCCATGATTTCTTCAATTTACGACTATGTAGATTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGTTATTTGGGAATTTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGCTTCCACGTATGTT</pcr_primer_p2>
		<pcr_amplicon_size>195</pcr_amplicon_size>
		<canonical_amplicon>AAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCARAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12899</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>320022</contig_pos>
        <strand>+</strand>
        <context>GCCAACACGC[A/G]RAAGTGTGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGC</left_flank>
        <right_flank>AAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAACCCGAGATATAAGTGCGCAAAGTTGAAAGATCACCTCTCTATCCCGTTCTCTATTCGATCGGAATACACTAATATATACTGGCAATATGACAACGGGCAATATCAGTAATCCCAAGTAAATTAGCCCGAAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAGATAGAAAAGTGCTTTGACGCATTTTTAGTGCCTTGACGCATTTTCAGCGCCTTGGCGCCTTTTAGTGTATTGACGCCTTTTAGTGTATTGGCGCTTTTTCAGTACTTTGACGCATTTCTAGTGCCTCAGAAAATTGGTATTTTCAATATTTTTTCTCAAAAATTTGTCATCTGAAAATGTCAAAAAAAGTGATGTTGAGAAAATTTTTGTATCCTATAATTTTAAGTTTTTCGGGTGCAAATAACGTAAAAATAAAATTTGTCATAAAATTTTTTTCCAAACTCCCATGATTTCTTCAATTTACGACTATGTAGATTC</canonical>
            <polymorphic>GTAACCCGAGATATAAGTGCGCAAAGTTGAAAGATCACCTCTCTATCCCGTTCTCTATTCGATCGGAATACACTAATATATACTGGCAATATGACAACGGGCAATATCAGTAATCCCAAGTAAATTAGCCCGAAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCRAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAGATAGAAAAGTGCTTTGACGCATTTTTAGTGCCTTGACGCATTTTCAGCGCCTTGGCGCCTTTTAGTGTATTGACGCCTTTTAGTGTATTGGCGCTTTTTCAGTACTTTGACGCATTTCTAGTGCCTCAGAAAATTGGTATTTTCAATATTTTTTCTCAAAAATTTGTCATCTGAAAATGTCAAAAAAAGTGATGTTGAGAAAATTTTTGTATCCTATAATTTTAAGTTTTTCGGGTGCAAATAACGTAAAAATAAAATTTGTCATAAAATTTTTTTCCAAACTCCCATGATTTCTTCAATTTACGACTATGTAGATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGTTATTTGGGAATTTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGCTTCCACGTATGTT</pcr_primer_p2>
		<pcr_amplicon_size>195</pcr_amplicon_size>
		<canonical_amplicon>AAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCRAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12900</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>320001</contig_pos>
        <strand>+</strand>
        <context>GCGCCAAGGC[A/C]CCAAAATTGC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGC</left_flank>
        <right_flank>CCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACCTTTCGATATCTCTCACAGTAACCCGAGATATAAGTGCGCAAAGTTGAAAGATCACCTCTCTATCCCGTTCTCTATTCGATCGGAATACACTAATATATACTGGCAATATGACAACGGGCAATATCAGTAATCCCAAGTAAATTAGCCCGAAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAGATAGAAAAGTGCTTTGACGCATTTTTAGTGCCTTGACGCATTTTCAGCGCCTTGGCGCCTTTTAGTGTATTGACGCCTTTTAGTGTATTGGCGCTTTTTCAGTACTTTGACGCATTTCTAGTGCCTCAGAAAATTGGTATTTTCAATATTTTTTCTCAAAAATTTGTCATCTGAAAATGTCAAAAAAAGTGATGTTGAGAAAATTTTTGTATCCTATAATTTTAAGTTTTTCGGGTGCAAATAACGTAAAAATAAAATTTGTCATAAAATTTTTTTCCAAACTCCCATGATTTCTTC</canonical>
            <polymorphic>TACCTTTCGATATCTCTCACAGTAACCCGAGATATAAGTGCGCAAAGTTGAAAGATCACCTCTCTATCCCGTTCTCTATTCGATCGGAATACACTAATATATACTGGCAATATGACAACGGGCAATATCAGTAATCCCAAGTAAATTAGCCCGAAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCMCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAGATAGAAAAGTGCTTTGACGCATTTTTAGTGCCTTGACGCATTTTCAGCGCCTTGGCGCCTTTTAGTGTATTGACGCCTTTTAGTGTATTGGCGCTTTTTCAGTACTTTGACGCATTTCTAGTGCCTCAGAAAATTGGTATTTTCAATATTTTTTCTCAAAAATTTGTCATCTGAAAATGTCAAAAAAAGTGATGTTGAGAAAATTTTTGTATCCTATAATTTTAAGTTTTTCGGGTGCAAATAACGTAAAAATAAAATTTGTCATAAAATTTTTTTCCAAACTCCCATGATTTCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>357 349 149 145</canonical_bands>
                <polymorphic_bands>494 357 149</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGTTATTTGGGAATTTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGCTTCCACGTATGTT</pcr_primer_p2>
		<pcr_amplicon_size>195</pcr_amplicon_size>
		<canonical_amplicon>AAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCMCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12901</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>319963</contig_pos>
        <strand>+</strand>
        <context>GCGTCACGAC[A/G]CTGGTAACTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGAC</left_flank>
        <right_flank>CTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTTCACCATAAAGTTAGAAACCTTTTGTCAGTTGACTACCTTTCGATATCTCTCACAGTAACCCGAGATATAAGTGCGCAAAGTTGAAAGATCACCTCTCTATCCCGTTCTCTATTCGATCGGAATACACTAATATATACTGGCAATATGACAACGGGCAATATCAGTAATCCCAAGTAAATTAGCCCGAAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAGATAGAAAAGTGCTTTGACGCATTTTTAGTGCCTTGACGCATTTTCAGCGCCTTGGCGCCTTTTAGTGTATTGACGCCTTTTAGTGTATTGGCGCTTTTTCAGTACTTTGACGCATTTCTAGTGCCTCAGAAAATTGGTATTTTCAATATTTTTTCTCAAAAATTTGTCATCTGAAAATGTCAAAAAAAGTGATGTTGAGAAAATTTTTGTATCCTATAATTTTAAGTTTTTCGGGTGCAAATAACGTAAAAATAAAATT</canonical>
            <polymorphic>ATGTTCACCATAAAGTTAGAAACCTTTTGTCAGTTGACTACCTTTCGATATCTCTCACAGTAACCCGAGATATAAGTGCGCAAAGTTGAAAGATCACCTCTCTATCCCGTTCTCTATTCGATCGGAATACACTAATATATACTGGCAATATGACAACGGGCAATATCAGTAATCCCAAGTAAATTAGCCCGAAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACRCTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAGATAGAAAAGTGCTTTGACGCATTTTTAGTGCCTTGACGCATTTTCAGCGCCTTGGCGCCTTTTAGTGTATTGACGCCTTTTAGTGTATTGGCGCTTTTTCAGTACTTTGACGCATTTCTAGTGCCTCAGAAAATTGGTATTTTCAATATTTTTTCTCAAAAATTTGTCATCTGAAAATGTCAAAAAAAGTGATGTTGAGAAAATTTTTGTATCCTATAATTTTAAGTTTTTCGGGTGCAAATAACGTAAAAATAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>155 143 113 68 55 50 46 38 37 35 28 27 26 23 22 21 19 18 18 11 10 9 8 7 5 2 2 2 2</canonical_bands>
                <polymorphic_bands>155 143 113 68 55 50 46 38 37 35 33 27 26 23 22 21 19 18 18 11 10 9 8 7 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGTTATTTGGGAATTTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGCTTCCACGTATGTT</pcr_primer_p2>
		<pcr_amplicon_size>195</pcr_amplicon_size>
		<canonical_amplicon>AAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACRCTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12902</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>319917</contig_pos>
        <strand>+</strand>
        <context>TGATARGAAA[G/T]TGTGATTCCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAA</left_flank>
        <right_flank>TGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGG</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTTGGTTACTGTAGAATATATAAAAAAGTAGTCAACTGATAAAATGTTCACCATAAAGTTAGAAACCTTTTGTCAGTTGACTACCTTTCGATATCTCTCACAGTAACCCGAGATATAAGTGCGCAAAGTTGAAAGATCACCTCTCTATCCCGTTCTCTATTCGATCGGAATACACTAATATATACTGGCAATATGACAACGGGCAATATCAGTAATCCCAAGTAAATTAGCCCGAAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAGATAGAAAAGTGCTTTGACGCATTTTTAGTGCCTTGACGCATTTTCAGCGCCTTGGCGCCTTTTAGTGTATTGACGCCTTTTAGTGTATTGGCGCTTTTTCAGTACTTTGACGCATTTCTAGTGCCTCAGAAAATTGGTATTTTCAATATTTTTTCTCAAAAATTTGTCATCTGAAAATGTCAAAAAAAGTGATGTTGAGAAAATTTTTGTATC</canonical>
            <polymorphic>TATTTTGGTTACTGTAGAATATATAAAAAAGTAGTCAACTGATAAAATGTTCACCATAAAGTTAGAAACCTTTTGTCAGTTGACTACCTTTCGATATCTCTCACAGTAACCCGAGATATAAGTGCGCAAAGTTGAAAGATCACCTCTCTATCCCGTTCTCTATTCGATCGGAATACACTAATATATACTGGCAATATGACAACGGGCAATATCAGTAATCCCAAGTAAATTAGCCCGAAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAKTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAGATAGAAAAGTGCTTTGACGCATTTTTAGTGCCTTGACGCATTTTCAGCGCCTTGGCGCCTTTTAGTGTATTGACGCCTTTTAGTGTATTGGCGCTTTTTCAGTACTTTGACGCATTTCTAGTGCCTCAGAAAATTGGTATTTTCAATATTTTTTCTCAAAAATTTGTCATCTGAAAATGTCAAAAAAAGTGATGTTGAGAAAATTTTTGTATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>155 143 113 68 55 53 50 38 37 35 28 27 26 23 22 21 19 18 18 11 10 9 8 5 2 2 2 2</canonical_bands>
                <polymorphic_bands>155 143 113 68 57 53 50 38 37 35 28 27 26 23 22 21 19 18 18 11 10 9 8 5 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAGGTAGATAATCGAAAATTATG</pcr_primer_p1>
		<pcr_primer_p2>TCCGTTCCTTGACTAGTTACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGA</canonical_amplicon>
		<polymorphic_amplicon>TGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAKTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12903</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>319912</contig_pos>
        <strand>+</strand>
        <context>ATTTTTGATA[A/G]GAAAKTGTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATA</left_flank>
        <right_flank>GAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATCTATTTTGGTTACTGTAGAATATATAAAAAAGTAGTCAACTGATAAAATGTTCACCATAAAGTTAGAAACCTTTTGTCAGTTGACTACCTTTCGATATCTCTCACAGTAACCCGAGATATAAGTGCGCAAAGTTGAAAGATCACCTCTCTATCCCGTTCTCTATTCGATCGGAATACACTAATATATACTGGCAATATGACAACGGGCAATATCAGTAATCCCAAGTAAATTAGCCCGAAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAGATAGAAAAGTGCTTTGACGCATTTTTAGTGCCTTGACGCATTTTCAGCGCCTTGGCGCCTTTTAGTGTATTGACGCCTTTTAGTGTATTGGCGCTTTTTCAGTACTTTGACGCATTTCTAGTGCCTCAGAAAATTGGTATTTTCAATATTTTTTCTCAAAAATTTGTCATCTGAAAATGTCAAAAAAAGTGATGTTGAGAAAATTTTT</canonical>
            <polymorphic>ACATCTATTTTGGTTACTGTAGAATATATAAAAAAGTAGTCAACTGATAAAATGTTCACCATAAAGTTAGAAACCTTTTGTCAGTTGACTACCTTTCGATATCTCTCACAGTAACCCGAGATATAAGTGCGCAAAGTTGAAAGATCACCTCTCTATCCCGTTCTCTATTCGATCGGAATACACTAATATATACTGGCAATATGACAACGGGCAATATCAGTAATCCCAAGTAAATTAGCCCGAAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATARGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAGATAGAAAAGTGCTTTGACGCATTTTTAGTGCCTTGACGCATTTTCAGCGCCTTGGCGCCTTTTAGTGTATTGACGCCTTTTAGTGTATTGGCGCTTTTTCAGTACTTTGACGCATTTCTAGTGCCTCAGAAAATTGGTATTTTCAATATTTTTTCTCAAAAATTTGTCATCTGAAAATGTCAAAAAAAGTGATGTTGAGAAAATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGGTAGATAATCGAAAATTATG</pcr_primer_p1>
		<pcr_primer_p2>TCCGTTCCTTGACTAGTTACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGA</canonical_amplicon>
		<polymorphic_amplicon>TGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATARGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12904</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>319878</contig_pos>
        <strand>+</strand>
        <context>CAACTAGAAA[C/T]ATCAAAAGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAA</left_flank>
        <right_flank>ATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTCTGGGAACAAAAATCACTTTAACTTTCAGCACATCTATTTTGGTTACTGTAGAATATATAAAAAAGTAGTCAACTGATAAAATGTTCACCATAAAGTTAGAAACCTTTTGTCAGTTGACTACCTTTCGATATCTCTCACAGTAACCCGAGATATAAGTGCGCAAAGTTGAAAGATCACCTCTCTATCCCGTTCTCTATTCGATCGGAATACACTAATATATACTGGCAATATGACAACGGGCAATATCAGTAATCCCAAGTAAATTAGCCCGAAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAGATAGAAAAGTGCTTTGACGCATTTTTAGTGCCTTGACGCATTTTCAGCGCCTTGGCGCCTTTTAGTGTATTGACGCCTTTTAGTGTATTGGCGCTTTTTCAGTACTTTGACGCATTTCTAGTGCCTCAGAAAATTGGTATTTTCAATATTTTTTCTCAAAAATTTGTCATCTGA</canonical>
            <polymorphic>CAGTCTGGGAACAAAAATCACTTTAACTTTCAGCACATCTATTTTGGTTACTGTAGAATATATAAAAAAGTAGTCAACTGATAAAATGTTCACCATAAAGTTAGAAACCTTTTGTCAGTTGACTACCTTTCGATATCTCTCACAGTAACCCGAGATATAAGTGCGCAAAGTTGAAAGATCACCTCTCTATCCCGTTCTCTATTCGATCGGAATACACTAATATATACTGGCAATATGACAACGGGCAATATCAGTAATCCCAAGTAAATTAGCCCGAAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAAYATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAGATAGAAAAGTGCTTTGACGCATTTTTAGTGCCTTGACGCATTTTCAGCGCCTTGGCGCCTTTTAGTGTATTGACGCCTTTTAGTGTATTGGCGCTTTTTCAGTACTTTGACGCATTTCTAGTGCCTCAGAAAATTGGTATTTTCAATATTTTTTCTCAAAAATTTGTCATCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGGTAGATAATCGAAAATTATG</pcr_primer_p1>
		<pcr_primer_p2>TCCGTTCCTTGACTAGTTACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGA</canonical_amplicon>
		<polymorphic_amplicon>TGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAAYATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12910</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>319765</contig_pos>
        <strand>+</strand>
        <context>AATTATGAGA[C/T]CGGAATCAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGA</left_flank>
        <right_flank>CGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTATACACGGATAGTACATTTTCCCTAAAAGCGCTGATTTGACGAGCAAAATAACAAAACCATAGAACATAACAATTATTCGATAGAAGTGTTGAGTGATCGGGTATACAGCAGTCTGGGAACAAAAATCACTTTAACTTTCAGCACATCTATTTTGGTTACTGTAGAATATATAAAAAAGTAGTCAACTGATAAAATGTTCACCATAAAGTTAGAAACCTTTTGTCAGTTGACTACCTTTCGATATCTCTCACAGTAACCCGAGATATAAGTGCGCAAAGTTGAAAGATCACCTCTCTATCCCGTTCTCTATTCGATCGGAATACACTAATATATACTGGCAATATGACAACGGGCAATATCAGTAATCCCAAGTAAATTAGCCCGAAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAGATAGAAAAGTGCTTTGACGCATTTTTAGTGCCTTGACGCATTTTCAGCGCCTTGGCGCCTT</canonical>
            <polymorphic>AACTATACACGGATAGTACATTTTCCCTAAAAGCGCTGATTTGACGAGCAAAATAACAAAACCATAGAACATAACAATTATTCGATAGAAGTGTTGAGTGATCGGGTATACAGCAGTCTGGGAACAAAAATCACTTTAACTTTCAGCACATCTATTTTGGTTACTGTAGAATATATAAAAAAGTAGTCAACTGATAAAATGTTCACCATAAAGTTAGAAACCTTTTGTCAGTTGACTACCTTTCGATATCTCTCACAGTAACCCGAGATATAAGTGCGCAAAGTTGAAAGATCACCTCTCTATCCCGTTCTCTATTCGATCGGAATACACTAATATATACTGGCAATATGACAACGGGCAATATCAGTAATCCCAAGTAAATTAGCCCGAAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGAYCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAGATAGAAAAGTGCTTTGACGCATTTTTAGTGCCTTGACGCATTTTCAGCGCCTTGGCGCCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTAGAGGAAAAAGAATGAC</pcr_primer_p1>
		<pcr_primer_p2>ATTCCCAAATAACTTTGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAAT</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGAYCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12911</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>319682</contig_pos>
        <strand>+</strand>
        <context>AATGACATGT[A/C]ATGGAGTAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTAATCCCAAGTAAATTAGCCCGAAAATTAGAGGAAAAAGAATGACATGT</left_flank>
        <right_flank>ATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACAAAAATTGCGCAAACTATCAATAATTGGAAATTTTGAATCGAGTTGTTTAGGAAAGCTGAAAAATTCAGACGTGTCTGGAAACTATACACGGATAGTACATTTTCCCTAAAAGCGCTGATTTGACGAGCAAAATAACAAAACCATAGAACATAACAATTATTCGATAGAAGTGTTGAGTGATCGGGTATACAGCAGTCTGGGAACAAAAATCACTTTAACTTTCAGCACATCTATTTTGGTTACTGTAGAATATATAAAAAAGTAGTCAACTGATAAAATGTTCACCATAAAGTTAGAAACCTTTTGTCAGTTGACTACCTTTCGATATCTCTCACAGTAACCCGAGATATAAGTGCGCAAAGTTGAAAGATCACCTCTCTATCCCGTTCTCTATTCGATCGGAATACACTAATATATACTGGCAATATGACAACGGGCAATATCAGTAATCCCAAGTAAATTAGCCCGAAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTT</canonical>
            <polymorphic>CACAAAAATTGCGCAAACTATCAATAATTGGAAATTTTGAATCGAGTTGTTTAGGAAAGCTGAAAAATTCAGACGTGTCTGGAAACTATACACGGATAGTACATTTTCCCTAAAAGCGCTGATTTGACGAGCAAAATAACAAAACCATAGAACATAACAATTATTCGATAGAAGTGTTGAGTGATCGGGTATACAGCAGTCTGGGAACAAAAATCACTTTAACTTTCAGCACATCTATTTTGGTTACTGTAGAATATATAAAAAAGTAGTCAACTGATAAAATGTTCACCATAAAGTTAGAAACCTTTTGTCAGTTGACTACCTTTCGATATCTCTCACAGTAACCCGAGATATAAGTGCGCAAAGTTGAAAGATCACCTCTCTATCCCGTTCTCTATTCGATCGGAATACACTAATATATACTGGCAATATGACAACGGGCAATATCAGTAATCCCAAGTAAATTAGCCCGAAAATTAGAGGAAAAAGAATGACATGTMATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTCTCTATCCCGTTCTCTAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCGATTATCTACCTTCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>198</pcr_amplicon_size>
		<canonical_amplicon>ACCTCTCTATCCCGTTCTCTATTCGATCGGAATACACTAATATATACTGGCAATATGACAACGGGCAATATCAGTAATCCCAAGTAAATTAGCCCGAAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACCTCTCTATCCCGTTCTCTATTCGATCGGAATACACTAATATATACTGGCAATATGACAACGGGCAATATCAGTAATCCCAAGTAAATTAGCCCGAAAATTAGAGGAAAAAGAATGACATGTMATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12915</snp_id>
        <super_contig>c006700934.Contig1</super_contig>
        <contig_pos>65253</contig_pos>
        <strand>+</strand>
        <context>TAACCCCCTT[A/C]CCAACTAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAAAAAAAGAGAGAAAGAGAGACAAATTGTTTGTAAACATAACCCCCTT</left_flank>
        <right_flank>CCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTGCGTCTCTCGC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATGAGAGCGCCGCCTGCACCCCTCTCTATTTAAAAGCGCATATCTCCAAAACTACAGTACCTATCAAAACGTTGCAAACTACAAAAATGTGTAAAATTTTATGCTGAGCAATTTCGCAGTTGTCAACTTTTTGATAGCTAGCTTGGTTTTTGAGATATGCAATGATTTCTGAGGTGTACTTTTTTTTCAATTTTTTATAAAAATCACGATTGCTCAGCTCAAACTCGAGCTATTTCAATTTTCTAAAAAGGTCGAAATATCAAATATCAGGGGTTTTTAAGAATAATTATTATTTTCAAAATAACTTTTTTTCAGTTTTCGAGATATTTCAAAAATTCAACTTGTTGGTTGAACTCTGAATTTCACCCCTACTATCATTATATCAGTGACACTGTGCAAAAACCGATTAAAACCAAACCAGGGACAAAAAATCATTGAAAAAGATAGAAAAAAAAAGAGAGAAAGAGAGACAAATTGTTTGTAAACATAACCCCCTTACCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTGCGTCTCTCGCCATTTTCTGTACTTTTTCGTTTTTTTTTTTCATCGTCAAAAAAAGTTGGTTTTCGCCGCTCTCTCTGCAACCCCAATTCATAAACGATGTGCTGTGACCATCTTTTTGACTTTTTGGCGCCAAAACCAAAATTATTCTTCAAAACGTTTTTTTTTTTCAAAATTTCTCCAATTCTTCATTTTGTTTCTCATAAGTATGCTGTATCATTCAAAAGCCCTTGAAATTTCCTACAAAACCGTTTTTGTTTCAAATCTCTAGCTCAAAATTAAAGCGAGTTGTGCGCCTTTAAAGAGACGCAGGGAAGTTAGAGCGCTCTCGCTTCTCTGCGTCTCCTGGACAGCTAACTTTAAAGGCGCATATCTCCAAAACGAATAAGGCAAAATGAAAAATTTAAAAACCATTGGATTTCAAATTTCATGAGCTATGTTTTTGTAGTTTGTAGCGTTTTGA</canonical>
            <polymorphic>ACATGAGAGCGCCGCCTGCACCCCTCTCTATTTAAAAGCGCATATCTCCAAAACTACAGTACCTATCAAAACGTTGCAAACTACAAAAATGTGTAAAATTTTATGCTGAGCAATTTCGCAGTTGTCAACTTTTTGATAGCTAGCTTGGTTTTTGAGATATGCAATGATTTCTGAGGTGTACTTTTTTTTCAATTTTTTATAAAAATCACGATTGCTCAGCTCAAACTCGAGCTATTTCAATTTTCTAAAAAGGTCGAAATATCAAATATCAGGGGTTTTTAAGAATAATTATTATTTTCAAAATAACTTTTTTTCAGTTTTCGAGATATTTCAAAAATTCAACTTGTTGGTTGAACTCTGAATTTCACCCCTACTATCATTATATCAGTGACACTGTGCAAAAACCGATTAAAACCAAACCAGGGACAAAAAATCATTGAAAAAGATAGAAAAAAAAAGAGAGAAAGAGAGACAAATTGTTTGTAAACATAACCCCCTTMCCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTGCGTCTCTCGCCATTTTCTGTACTTTTTCGTTTTTTTTTTTCATCGTCAAAAAAAGTTGGTTTTCGCCGCTCTCTCTGCAACCCCAATTCATAAACGATGTGCTGTGACCATCTTTTTGACTTTTTGGCGCCAAAACCAAAATTATTCTTCAAAACGTTTTTTTTTTTCAAAATTTCTCCAATTCTTCATTTTGTTTCTCATAAGTATGCTGTATCATTCAAAAGCCCTTGAAATTTCCTACAAAACCGTTTTTGTTTCAAATCTCTAGCTCAAAATTAAAGCGAGTTGTGCGCCTTTAAAGAGACGCAGGGAAGTTAGAGCGCTCTCGCTTCTCTGCGTCTCCTGGACAGCTAACTTTAAAGGCGCATATCTCCAAAACGAATAAGGCAAAATGAAAAATTTAAAAACCATTGGATTTCAAATTTCATGAGCTATGTTTTTGTAGTTTGTAGCGTTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGATATTTCAAAAATTCAACT</pcr_primer_p1>
		<pcr_primer_p2>AAAACGAAAAAGTACAGAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGAGATATTTCAAAAATTCAACTTGTTGGTTGAACTCTGAATTTCACCCCTACTATCATTATATCAGTGACACTGTGCAAAAACCGATTAAAACCAAACCAGGGACAAAAAATCATTGAAAAAGATAGAAAAAAAAAGAGAGAAAGAGAGACAAATTGTTTGTAAACATAACCCCCTTACCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTGCGTCTCTCGCCATTTTCTGTACTTTTTCGTTTT</canonical_amplicon>
		<polymorphic_amplicon>CGAGATATTTCAAAAATTCAACTTGTTGGTTGAACTCTGAATTTCACCCCTACTATCATTATATCAGTGACACTGTGCAAAAACCGATTAAAACCAAACCAGGGACAAAAAATCATTGAAAAAGATAGAAAAAAAAAGAGAGAAAGAGAGACAAATTGTTTGTAAACATAACCCCCTTMCCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTGCGTCTCTCGCCATTTTCTGTACTTTTTCGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12916</snp_id>
        <super_contig>c006700934.Contig1</super_contig>
        <contig_pos>65294</contig_pos>
        <strand>+</strand>
        <context>CTTTTCTCTG[C/T]GTCTCTCGYC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACCCCCTTACCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTG</left_flank>
        <right_flank>GTCTCTCGCCATTTTCTGTACTTTTTCGTTTTTTTTTTTCATCGTCAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATCTCCAAAACTACAGTACCTATCAAAACGTTGCAAACTACAAAAATGTGTAAAATTTTATGCTGAGCAATTTCGCAGTTGTCAACTTTTTGATAGCTAGCTTGGTTTTTGAGATATGCAATGATTTCTGAGGTGTACTTTTTTTTCAATTTTTTATAAAAATCACGATTGCTCAGCTCAAACTCGAGCTATTTCAATTTTCTAAAAAGGTCGAAATATCAAATATCAGGGGTTTTTAAGAATAATTATTATTTTCAAAATAACTTTTTTTCAGTTTTCGAGATATTTCAAAAATTCAACTTGTTGGTTGAACTCTGAATTTCACCCCTACTATCATTATATCAGTGACACTGTGCAAAAACCGATTAAAACCAAACCAGGGACAAAAAATCATTGAAAAAGATAGAAAAAAAAAGAGAGAAAGAGAGACAAATTGTTTGTAAACATAACCCCCTTACCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTGCGTCTCTCGCCATTTTCTGTACTTTTTCGTTTTTTTTTTTCATCGTCAAAAAAAGTTGGTTTTCGCCGCTCTCTCTGCAACCCCAATTCATAAACGATGTGCTGTGACCATCTTTTTGACTTTTTGGCGCCAAAACCAAAATTATTCTTCAAAACGTTTTTTTTTTTCAAAATTTCTCCAATTCTTCATTTTGTTTCTCATAAGTATGCTGTATCATTCAAAAGCCCTTGAAATTTCCTACAAAACCGTTTTTGTTTCAAATCTCTAGCTCAAAATTAAAGCGAGTTGTGCGCCTTTAAAGAGACGCAGGGAAGTTAGAGCGCTCTCGCTTCTCTGCGTCTCCTGGACAGCTAACTTTAAAGGCGCATATCTCCAAAACGAATAAGGCAAAATGAAAAATTTAAAAACCATTGGATTTCAAATTTCATGAGCTATGTTTTTGTAGTTTGTAGCGTTTTGATAGCTTTATTGGTTTTTGAGATAGAGACGCAGATAGTTAGA</canonical>
            <polymorphic>ATATCTCCAAAACTACAGTACCTATCAAAACGTTGCAAACTACAAAAATGTGTAAAATTTTATGCTGAGCAATTTCGCAGTTGTCAACTTTTTGATAGCTAGCTTGGTTTTTGAGATATGCAATGATTTCTGAGGTGTACTTTTTTTTCAATTTTTTATAAAAATCACGATTGCTCAGCTCAAACTCGAGCTATTTCAATTTTCTAAAAAGGTCGAAATATCAAATATCAGGGGTTTTTAAGAATAATTATTATTTTCAAAATAACTTTTTTTCAGTTTTCGAGATATTTCAAAAATTCAACTTGTTGGTTGAACTCTGAATTTCACCCCTACTATCATTATATCAGTGACACTGTGCAAAAACCGATTAAAACCAAACCAGGGACAAAAAATCATTGAAAAAGATAGAAAAAAAAAGAGAGAAAGAGAGACAAATTGTTTGTAAACATAACCCCCTTACCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTGYGTCTCTCGCCATTTTCTGTACTTTTTCGTTTTTTTTTTTCATCGTCAAAAAAAGTTGGTTTTCGCCGCTCTCTCTGCAACCCCAATTCATAAACGATGTGCTGTGACCATCTTTTTGACTTTTTGGCGCCAAAACCAAAATTATTCTTCAAAACGTTTTTTTTTTTCAAAATTTCTCCAATTCTTCATTTTGTTTCTCATAAGTATGCTGTATCATTCAAAAGCCCTTGAAATTTCCTACAAAACCGTTTTTGTTTCAAATCTCTAGCTCAAAATTAAAGCGAGTTGTGCGCCTTTAAAGAGACGCAGGGAAGTTAGAGCGCTCTCGCTTCTCTGCGTCTCCTGGACAGCTAACTTTAAAGGCGCATATCTCCAAAACGAATAAGGCAAAATGAAAAATTTAAAAACCATTGGATTTCAAATTTCATGAGCTATGTTTTTGTAGTTTGTAGCGTTTTGATAGCTTTATTGGTTTTTGAGATAGAGACGCAGATAGTTAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>505 214 213 68</canonical_bands>
                <polymorphic_bands>573 214 213</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACCGATTAAAACCAAAC</pcr_primer_p1>
		<pcr_primer_p2>CACAGCACATCGTTTATGAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAAACCGATTAAAACCAAACCAGGGACAAAAAATCATTGAAAAAGATAGAAAAAAAAAGAGAGAAAGAGAGACAAATTGTTTGTAAACATAACCCCCTTACCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTGCGTCTCTCGCCATTTTCTGTACTTTTTCGTTTTTTTTTTTCATCGTCAAAAAAAGTTGGTTTTCGCCGCTCTCTCTGCAACCCCAATTCATAAACGATGTGCTGTG</canonical_amplicon>
		<polymorphic_amplicon>AAAAACCGATTAAAACCAAACCAGGGACAAAAAATCATTGAAAAAGATAGAAAAAAAAAGAGAGAAAGAGAGACAAATTGTTTGTAAACATAACCCCCTTACCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTGYGTCTCTCGCCATTTTCTGTACTTTTTCGTTTTTTTTTTTCATCGTCAAAAAAAGTTGGTTTTCGCCGCTCTCTCTGCAACCCCAATTCATAAACGATGTGCTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12917</snp_id>
        <super_contig>c006700934.Contig1</super_contig>
        <contig_pos>65303</contig_pos>
        <strand>+</strand>
        <context>GYGTCTCTCG[C/T]CATTTTCTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTGCGTCTCTCG</left_flank>
        <right_flank>CATTTTCTGTACTTTTTCGTTTTTTTTTTTCATCGTCAAAAAAAGTTGGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTACAGTACCTATCAAAACGTTGCAAACTACAAAAATGTGTAAAATTTTATGCTGAGCAATTTCGCAGTTGTCAACTTTTTGATAGCTAGCTTGGTTTTTGAGATATGCAATGATTTCTGAGGTGTACTTTTTTTTCAATTTTTTATAAAAATCACGATTGCTCAGCTCAAACTCGAGCTATTTCAATTTTCTAAAAAGGTCGAAATATCAAATATCAGGGGTTTTTAAGAATAATTATTATTTTCAAAATAACTTTTTTTCAGTTTTCGAGATATTTCAAAAATTCAACTTGTTGGTTGAACTCTGAATTTCACCCCTACTATCATTATATCAGTGACACTGTGCAAAAACCGATTAAAACCAAACCAGGGACAAAAAATCATTGAAAAAGATAGAAAAAAAAAGAGAGAAAGAGAGACAAATTGTTTGTAAACATAACCCCCTTACCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTGCGTCTCTCGCCATTTTCTGTACTTTTTCGTTTTTTTTTTTCATCGTCAAAAAAAGTTGGTTTTCGCCGCTCTCTCTGCAACCCCAATTCATAAACGATGTGCTGTGACCATCTTTTTGACTTTTTGGCGCCAAAACCAAAATTATTCTTCAAAACGTTTTTTTTTTTCAAAATTTCTCCAATTCTTCATTTTGTTTCTCATAAGTATGCTGTATCATTCAAAAGCCCTTGAAATTTCCTACAAAACCGTTTTTGTTTCAAATCTCTAGCTCAAAATTAAAGCGAGTTGTGCGCCTTTAAAGAGACGCAGGGAAGTTAGAGCGCTCTCGCTTCTCTGCGTCTCCTGGACAGCTAACTTTAAAGGCGCATATCTCCAAAACGAATAAGGCAAAATGAAAAATTTAAAAACCATTGGATTTCAAATTTCATGAGCTATGTTTTTGTAGTTTGTAGCGTTTTGATAGCTTTATTGGTTTTTGAGATAGAGACGCAGATAGTTAGAGTGTCTCGT</canonical>
            <polymorphic>AAACTACAGTACCTATCAAAACGTTGCAAACTACAAAAATGTGTAAAATTTTATGCTGAGCAATTTCGCAGTTGTCAACTTTTTGATAGCTAGCTTGGTTTTTGAGATATGCAATGATTTCTGAGGTGTACTTTTTTTTCAATTTTTTATAAAAATCACGATTGCTCAGCTCAAACTCGAGCTATTTCAATTTTCTAAAAAGGTCGAAATATCAAATATCAGGGGTTTTTAAGAATAATTATTATTTTCAAAATAACTTTTTTTCAGTTTTCGAGATATTTCAAAAATTCAACTTGTTGGTTGAACTCTGAATTTCACCCCTACTATCATTATATCAGTGACACTGTGCAAAAACCGATTAAAACCAAACCAGGGACAAAAAATCATTGAAAAAGATAGAAAAAAAAAGAGAGAAAGAGAGACAAATTGTTTGTAAACATAACCCCCTTACCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTGCGTCTCTCGYCATTTTCTGTACTTTTTCGTTTTTTTTTTTCATCGTCAAAAAAAGTTGGTTTTCGCCGCTCTCTCTGCAACCCCAATTCATAAACGATGTGCTGTGACCATCTTTTTGACTTTTTGGCGCCAAAACCAAAATTATTCTTCAAAACGTTTTTTTTTTTCAAAATTTCTCCAATTCTTCATTTTGTTTCTCATAAGTATGCTGTATCATTCAAAAGCCCTTGAAATTTCCTACAAAACCGTTTTTGTTTCAAATCTCTAGCTCAAAATTAAAGCGAGTTGTGCGCCTTTAAAGAGACGCAGGGAAGTTAGAGCGCTCTCGCTTCTCTGCGTCTCCTGGACAGCTAACTTTAAAGGCGCATATCTCCAAAACGAATAAGGCAAAATGAAAAATTTAAAAACCATTGGATTTCAAATTTCATGAGCTATGTTTTTGTAGTTTGTAGCGTTTTGATAGCTTTATTGGTTTTTGAGATAGAGACGCAGATAGTTAGAGTGTCTCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>496 223 213 68</canonical_bands>
                <polymorphic_bands>564 223 213</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACCGATTAAAACCAAAC</pcr_primer_p1>
		<pcr_primer_p2>CACAGCACATCGTTTATGAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAAACCGATTAAAACCAAACCAGGGACAAAAAATCATTGAAAAAGATAGAAAAAAAAAGAGAGAAAGAGAGACAAATTGTTTGTAAACATAACCCCCTTACCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTGCGTCTCTCGCCATTTTCTGTACTTTTTCGTTTTTTTTTTTCATCGTCAAAAAAAGTTGGTTTTCGCCGCTCTCTCTGCAACCCCAATTCATAAACGATGTGCTGTG</canonical_amplicon>
		<polymorphic_amplicon>AAAAACCGATTAAAACCAAACCAGGGACAAAAAATCATTGAAAAAGATAGAAAAAAAAAGAGAGAAAGAGAGACAAATTGTTTGTAAACATAACCCCCTTACCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTGCGTCTCTCGYCATTTTCTGTACTTTTTCGTTTTTTTTTTTCATCGTCAAAAAAAGTTGGTTTTCGCCGCTCTCTCTGCAACCCCAATTCATAAACGATGTGCTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12918</snp_id>
        <super_contig>c006700934.Contig1</super_contig>
        <contig_pos>65440</contig_pos>
        <strand>+</strand>
        <context>CAAAATTATT[C/T]TTCAAAACGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGTGCTGTGACCATCTTTTTGACTTTTTGGCGCCAAAACCAAAATTATT</left_flank>
        <right_flank>TTCAAAACGTTTTTTTTTTTCAAAATTTCTCCAATTCTTCATTTTGTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAATTTTTTATAAAAATCACGATTGCTCAGCTCAAACTCGAGCTATTTCAATTTTCTAAAAAGGTCGAAATATCAAATATCAGGGGTTTTTAAGAATAATTATTATTTTCAAAATAACTTTTTTTCAGTTTTCGAGATATTTCAAAAATTCAACTTGTTGGTTGAACTCTGAATTTCACCCCTACTATCATTATATCAGTGACACTGTGCAAAAACCGATTAAAACCAAACCAGGGACAAAAAATCATTGAAAAAGATAGAAAAAAAAAGAGAGAAAGAGAGACAAATTGTTTGTAAACATAACCCCCTTACCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTGCGTCTCTCGCCATTTTCTGTACTTTTTCGTTTTTTTTTTTCATCGTCAAAAAAAGTTGGTTTTCGCCGCTCTCTCTGCAACCCCAATTCATAAACGATGTGCTGTGACCATCTTTTTGACTTTTTGGCGCCAAAACCAAAATTATTCTTCAAAACGTTTTTTTTTTTCAAAATTTCTCCAATTCTTCATTTTGTTTCTCATAAGTATGCTGTATCATTCAAAAGCCCTTGAAATTTCCTACAAAACCGTTTTTGTTTCAAATCTCTAGCTCAAAATTAAAGCGAGTTGTGCGCCTTTAAAGAGACGCAGGGAAGTTAGAGCGCTCTCGCTTCTCTGCGTCTCCTGGACAGCTAACTTTAAAGGCGCATATCTCCAAAACGAATAAGGCAAAATGAAAAATTTAAAAACCATTGGATTTCAAATTTCATGAGCTATGTTTTTGTAGTTTGTAGCGTTTTGATAGCTTTATTGGTTTTTGAGATAGAGACGCAGATAGTTAGAGTGTCTCGTTTCTCGGCGCTTCTCTTGGCGCGCGCTAACTTTAAAGGCGCATATCTCAAAAACCGTAATAGCTATCAGAAAGTTGTAATCTACAAAAATGTATAAAATTTTATGCTGAGCAATTTTGTAGTTTATAATTTTGCCTA</canonical>
            <polymorphic>TTCAATTTTTTATAAAAATCACGATTGCTCAGCTCAAACTCGAGCTATTTCAATTTTCTAAAAAGGTCGAAATATCAAATATCAGGGGTTTTTAAGAATAATTATTATTTTCAAAATAACTTTTTTTCAGTTTTCGAGATATTTCAAAAATTCAACTTGTTGGTTGAACTCTGAATTTCACCCCTACTATCATTATATCAGTGACACTGTGCAAAAACCGATTAAAACCAAACCAGGGACAAAAAATCATTGAAAAAGATAGAAAAAAAAAGAGAGAAAGAGAGACAAATTGTTTGTAAACATAACCCCCTTACCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTGCGTCTCTCGCCATTTTCTGTACTTTTTCGTTTTTTTTTTTCATCGTCAAAAAAAGTTGGTTTTCGCCGCTCTCTCTGCAACCCCAATTCATAAACGATGTGCTGTGACCATCTTTTTGACTTTTTGGCGCCAAAACCAAAATTATTYTTCAAAACGTTTTTTTTTTTCAAAATTTCTCCAATTCTTCATTTTGTTTCTCATAAGTATGCTGTATCATTCAAAAGCCCTTGAAATTTCCTACAAAACCGTTTTTGTTTCAAATCTCTAGCTCAAAATTAAAGCGAGTTGTGCGCCTTTAAAGAGACGCAGGGAAGTTAGAGCGCTCTCGCTTCTCTGCGTCTCCTGGACAGCTAACTTTAAAGGCGCATATCTCCAAAACGAATAAGGCAAAATGAAAAATTTAAAAACCATTGGATTTCAAATTTCATGAGCTATGTTTTTGTAGTTTGTAGCGTTTTGATAGCTTTATTGGTTTTTGAGATAGAGACGCAGATAGTTAGAGTGTCTCGTTTCTCGGCGCTTCTCTTGGCGCGCGCTAACTTTAAAGGCGCATATCTCAAAAACCGTAATAGCTATCAGAAAGTTGTAATCTACAAAAATGTATAAAATTTTATGCTGAGCAATTTTGTAGTTTATAATTTTGCCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTGCTGTGACCATCTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGAGATACAGTCAAAAATGAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>613</pcr_amplicon_size>
		<canonical_amplicon>ATGTGCTGTGACCATCTTTTTGACTTTTTGGCGCCAAAACCAAAATTATTCTTCAAAACGTTTTTTTTTTTCAA</canonical_amplicon>
		<polymorphic_amplicon>ATGTGCTGTGACCATCTTTTTGACTTTTTGGCGCCAAAACCAAAATTATTYTTCAAAACGTTTTTTTTTTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12919</snp_id>
        <super_contig>c006700934.Contig1</super_contig>
        <contig_pos>65480</contig_pos>
        <strand></strand>
        <context>TCCAATTCTT[C/T]ATTTTGttty</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAAATTATTCTTCAAAACGTTTTTTTTTTTCAAAATTTCTCCAATTCTT</left_flank>
        <right_flank>ATTTTGTTTCTCATAAGTATGCTGTATCATTCAAAAGCCCTTGAAATTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGCTATTTCAATTTTCTAAAAAGGTCGAAATATCAAATATCAGGGGTTTTTAAGAATAATTATTATTTTCAAAATAACTTTTTTTCAGTTTTCGAGATATTTCAAAAATTCAACTTGTTGGTTGAACTCTGAATTTCACCCCTACTATCATTATATCAGTGACACTGTGCAAAAACCGATTAAAACCAAACCAGGGACAAAAAATCATTGAAAAAGATAGAAAAAAAAAGAGAGAAAGAGAGACAAATTGTTTGTAAACATAACCCCCTTACCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTGCGTCTCTCGCCATTTTCTGTACTTTTTCGTTTTTTTTTTTCATCGTCAAAAAAAGTTGGTTTTCGCCGCTCTCTCTGCAACCCCAATTCATAAACGATGTGCTGTGACCATCTTTTTGACTTTTTGGCGCCAAAACCAAAATTATTCTTCAAAACGTTTTTTTTTTTCAAAATTTCTCCAATTCTTCATTTTGTTTCTCATAAGTATGCTGTATCATTCAAAAGCCCTTGAAATTTCCTACAAAACCGTTTTTGTTTCAAATCTCTAGCTCAAAATTAAAGCGAGTTGTGCGCCTTTAAAGAGACGCAGGGAAGTTAGAGCGCTCTCGCTTCTCTGCGTCTCCTGGACAGCTAACTTTAAAGGCGCATATCTCCAAAACGAATAAGGCAAAATGAAAAATTTAAAAACCATTGGATTTCAAATTTCATGAGCTATGTTTTTGTAGTTTGTAGCGTTTTGATAGCTTTATTGGTTTTTGAGATAGAGACGCAGATAGTTAGAGTGTCTCGTTTCTCGGCGCTTCTCTTGGCGCGCGCTAACTTTAAAGGCGCATATCTCAAAAACCGTAATAGCTATCAGAAAGTTGTAATCTACAAAAATGTATAAAATTTTATGCTGAGCAATTTTGTAGTTTATAATTTTGCCTAACTATTATCGCTTTTTGAATAATTTTGATTTACGCAGGCA</canonical>
            <polymorphic>CGAGCTATTTCAATTTTCTAAAAAGGTCGAAATATCAAATATCAGGGGTTTTTAAGAATAATTATTATTTTCAAAATAACTTTTTTTCAGTTTTCGAGATATTTCAAAAATTCAACTTGTTGGTTGAACTCTGAATTTCACCCCTACTATCATTATATCAGTGACACTGTGCAAAAACCGATTAAAACCAAACCAGGGACAAAAAATCATTGAAAAAGATAGAAAAAAAAAGAGAGAAAGAGAGACAAATTGTTTGTAAACATAACCCCCTTACCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTGCGTCTCTCGCCATTTTCTGTACTTTTTCGTTTTTTTTTTTCATCGTCAAAAAAAGTTGGTTTTCGCCGCTCTCTCTGCAACCCCAATTCATAAACGATGTGCTGTGACCATCTTTTTGACTTTTTGGCGCCAAAACCAAAATTATTCTTCAAAACGTTTTTTTTTTTCAAAATTTCTCCAATTCTTYATTTTGTTTCTCATAAGTATGCTGTATCATTCAAAAGCCCTTGAAATTTCCTACAAAACCGTTTTTGTTTCAAATCTCTAGCTCAAAATTAAAGCGAGTTGTGCGCCTTTAAAGAGACGCAGGGAAGTTAGAGCGCTCTCGCTTCTCTGCGTCTCCTGGACAGCTAACTTTAAAGGCGCATATCTCCAAAACGAATAAGGCAAAATGAAAAATTTAAAAACCATTGGATTTCAAATTTCATGAGCTATGTTTTTGTAGTTTGTAGCGTTTTGATAGCTTTATTGGTTTTTGAGATAGAGACGCAGATAGTTAGAGTGTCTCGTTTCTCGGCGCTTCTCTTGGCGCGCGCTAACTTTAAAGGCGCATATCTCAAAAACCGTAATAGCTATCAGAAAGTTGTAATCTACAAAAATGTATAAAATTTTATGCTGAGCAATTTTGTAGTTTATAATTTTGCCTAACTATTATCGCTTTTTGAATAATTTTGATTTACGCAGGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGACCATCTTTTTGACTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTGATTTTGAGGTGAGATACAGT</pcr_primer_p2>
		<pcr_amplicon_size>618</pcr_amplicon_size>
		<canonical_amplicon>GTGACCATCTTTTTGACTTTTTGGCGCCAAAACCAAAATTATTCTTCAAAACGTTTTTTTTTTTCAAAATTTCTCCAATTCTTCATTTTGTTTCTCATAAGTATGC</canonical_amplicon>
		<polymorphic_amplicon>GTGACCATCTTTTTGACTTTTTGGCGCCAAAACCAAAATTATTCTTCAAAACGTTTTTTTTTTTCAAAATTTCTCCAATTCTTYATTTTGTTTCTCATAAGTATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12920</snp_id>
        <super_contig>c006700934.Contig1</super_contig>
        <contig_pos>67592</contig_pos>
        <strand>+</strand>
        <context>AATCCCCGCC[A/G]CCGCTTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCC</left_flank>
        <right_flank>CCGCTTTTTTCTCCGAAAAAAGAAGAGTATTGTTACAAAATCAGAACGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCACCGCTTTTTTCTCCGAAAAAAGAAGAGTATTGTTACAAAATCAGAACGTCATCATATTCGAAACATCCAAATTGCAGAGATCAAAATAGGAAAAAGAAAAAAAAACGGAGTTAGAGCTAGTGGGGACTGAACCCCTGGCCTTCAAAATGATCATGAGCGCGTTAGCCGCTACACCACACAGGCGACAGGAGGGAAGGGAGTGGAAGGCGTATAGGAGAGGGCGCCTTTCCGCGAGTCCACGAGGGAGGAGGAAGGGAAAAATGAAAAATTGAATTTTTCCGAAAAATCAAAATTTTCAATTTTTTCAAAAAACCCGCTCAAAGCCAATCTATTAAATTAATCCAAGAATGTAATATATACGTCCCCTCTTCTAGAGACAGTAATCCATCATATTGGCGTTTTTCAGGTAGTGTCATCTCTCTCTCTTTTTGGCCTTGAATCGTCTTCTCCTGTGTCGCTTTGTTATCTTTTCGGTACTGTCATATTCTTCTTCTTCTTCT</canonical>
            <polymorphic>AGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCRCCGCTTTTTTCTCCGAAAAAAGAAGAGTATTGTTACAAAATCAGAACGTCATCATATTCGAAACATCCAAATTGCAGAGATCAAAATAGGAAAAAGAAAAAAAAACGGAGTTAGAGCTAGTGGGGACTGAACCCCTGGCCTTCAAAATGATCATGAGCGCGTTAGCCGCTACACCACACAGGCGACAGGAGGGAAGGGAGTGGAAGGCGTATAGGAGAGGGCGCCTTTCCGCGAGTCCACGAGGGAGGAGGAAGGGAAAAATGAAAAATTGAATTTTTCCGAAAAATCAAAATTTTCAATTTTTTCAAAAAACCCGCTCAAAGCCAATCTATTAAATTAATCCAAGAATGTAATATATACGTCCCCTCTTCTAGAGACAGTAATCCATCATATTGGCGTTTTTCAGGTAGTGTCATCTCTCTCTCTTTTTGGCCTTGAATCGTCTTCTCCTGTGTCGCTTTGTTATCTTTTCGGTACTGTCATATTCTTCTTCTTCTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>173 145 122 108 83 62 51 46 46 42 37 24 21 15 13 7 3 2</canonical_bands>
                <polymorphic_bands>173 145 143 108 83 62 51 46 46 42 37 24 15 13 7 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTCTGTCTCTTTTTCTCTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTTTTTCCTATTTTGATCTC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCACCGCTTTTTTCTCCGAAAAAAGAAGAGTATTGTTACAAAATCAGAACGTCATCATATTCGAAACATCCAAATTGCAGAGATCAAAATAGGAAAAAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCRCCGCTTTTTTCTCCGAAAAAAGAAGAGTATTGTTACAAAATCAGAACGTCATCATATTCGAAACATCCAAATTGCAGAGATCAAAATAGGAAAAAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12925</snp_id>
        <super_contig>c006700934.Contig1</super_contig>
        <contig_pos>67301</contig_pos>
        <strand>+</strand>
        <context>ATTTTTCCTC[A/G]TTTTTCAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTC</left_flank>
        <right_flank>TTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGATTTTTTGGCGCTTTTTGTCTCTCGAAGGCAACAAGTTATTTACAAGTAGCACTTTTCCGTTTGGCATGGGAAAATGAGCTTGTGGACCCGTGAGAACCTTCTAGACACCTGAAAATGTCTCAAGCAAAAAGAAAAAAGGAATTGGCACCTGAGGGGGTCGAACCCGCGGGAGCTCTAGATTCAAAAGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCACCGCTTTTTTCTCCGAAAAAAGAAGAGTATTGTTACAAAATCAGAACGTCATCATATTCGAAACATCCAAATTGCAGAGATCAAAATAGGAAAAAGAAAAAAAAACGGAGTTAGAGCTAGTGGGGACTGAACCCCTGGCCTTCAAAATGATCATGAGCGCGTTAGCCGCTACACCACACAGGCGACAGGAGGGAAGGGAGTGGAAGGCG</canonical>
            <polymorphic>TTGATTTTTTGGCGCTTTTTGTCTCTCGAAGGCAACAAGTTATTTACAAGTAGCACTTTTCCGTTTGGCATGGGAAAATGAGCTTGTGGACCCGTGAGAACCTTCTAGACACCTGAAAATGTCTCAAGCAAAAAGAAAAAAGGAATTGGCACCTGAGGGGGTCGAACCCGCGGGAGCTCTAGATTCAAAAGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCRTTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCACCGCTTTTTTCTCCGAAAAAAGAAGAGTATTGTTACAAAATCAGAACGTCATCATATTCGAAACATCCAAATTGCAGAGATCAAAATAGGAAAAAGAAAAAAAAACGGAGTTAGAGCTAGTGGGGACTGAACCCCTGGCCTTCAAAATGATCATGAGCGCGTTAGCCGCTACACCACACAGGCGACAGGAGGGAAGGGAGTGGAAGGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTATTTGAGAGAAAATGACC</pcr_primer_p1>
		<pcr_primer_p2>GAGAGAAAAAGAGACAGAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>TGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTC</canonical_amplicon>
		<polymorphic_amplicon>TGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCRTTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12926</snp_id>
        <super_contig>c006700934.Contig1</super_contig>
        <contig_pos>67243</contig_pos>
        <strand>+</strand>
        <context>ACCGCGAAAA[C/T]TGAAGTGTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAA</left_flank>
        <right_flank>TGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCAAAATTCTCTTTTTTCAACTTTTTCTAGAATTTTCTCTTCTTTCCCACAGGTTCTTTGATTTTTTGGCGCTTTTTGTCTCTCGAAGGCAACAAGTTATTTACAAGTAGCACTTTTCCGTTTGGCATGGGAAAATGAGCTTGTGGACCCGTGAGAACCTTCTAGACACCTGAAAATGTCTCAAGCAAAAAGAAAAAAGGAATTGGCACCTGAGGGGGTCGAACCCGCGGGAGCTCTAGATTCAAAAGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCACCGCTTTTTTCTCCGAAAAAAGAAGAGTATTGTTACAAAATCAGAACGTCATCATATTCGAAACATCCAAATTGCAGAGATCAAAATAGGAAAAAGAAAAAAAAACGGAGTTAGAGCTAGTGGGGACTGAACCCCTGGCCTTCAAAATGAT</canonical>
            <polymorphic>TGCAAAATTCTCTTTTTTCAACTTTTTCTAGAATTTTCTCTTCTTTCCCACAGGTTCTTTGATTTTTTGGCGCTTTTTGTCTCTCGAAGGCAACAAGTTATTTACAAGTAGCACTTTTCCGTTTGGCATGGGAAAATGAGCTTGTGGACCCGTGAGAACCTTCTAGACACCTGAAAATGTCTCAAGCAAAAAGAAAAAAGGAATTGGCACCTGAGGGGGTCGAACCCGCGGGAGCTCTAGATTCAAAAGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAAYTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCACCGCTTTTTTCTCCGAAAAAAGAAGAGTATTGTTACAAAATCAGAACGTCATCATATTCGAAACATCCAAATTGCAGAGATCAAAATAGGAAAAAGAAAAAAAAACGGAGTTAGAGCTAGTGGGGACTGAACCCCTGGCCTTCAAAATGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>259 170 162 108 82 78 40 32 26 14 14 10 5</canonical_bands>
                <polymorphic_bands>259 186 170 162 82 40 32 26 14 14 10 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACAATGAGGAAGAAGTGGT</pcr_primer_p1>
		<pcr_primer_p2>GGAAAAATGAAATGAACAGATG</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>CACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCC</canonical_amplicon>
		<polymorphic_amplicon>CACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAAYTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12928</snp_id>
        <super_contig>c006700934.Contig1</super_contig>
        <contig_pos>67186</contig_pos>
        <strand>+</strand>
        <context>ARGCGTTYYY[C/T]CCCCCCATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCC</left_flank>
        <right_flank>CCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAATTTCATTGCAAAACTTACTATCTAATCATTCTTTTTTTGAAAACTGGCAATTCTGCAAAATTCTCTTTTTTCAACTTTTTCTAGAATTTTCTCTTCTTTCCCACAGGTTCTTTGATTTTTTGGCGCTTTTTGTCTCTCGAAGGCAACAAGTTATTTACAAGTAGCACTTTTCCGTTTGGCATGGGAAAATGAGCTTGTGGACCCGTGAGAACCTTCTAGACACCTGAAAATGTCTCAAGCAAAAAGAAAAAAGGAATTGGCACCTGAGGGGGTCGAACCCGCGGGAGCTCTAGATTCAAAAGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCACCGCTTTTTTCTCCGAAAAAAGAAGAGTATTGTTACAAAATCAGAACGTCATCATATTCGAAACATCCAAATTGCAGAGATCAAAATAGGAAAA</canonical>
            <polymorphic>GTAATTTCATTGCAAAACTTACTATCTAATCATTCTTTTTTTGAAAACTGGCAATTCTGCAAAATTCTCTTTTTTCAACTTTTTCTAGAATTTTCTCTTCTTTCCCACAGGTTCTTTGATTTTTTGGCGCTTTTTGTCTCTCGAAGGCAACAAGTTATTTACAAGTAGCACTTTTCCGTTTGGCATGGGAAAATGAGCTTGTGGACCCGTGAGAACCTTCTAGACACCTGAAAATGTCTCAAGCAAAAAGAAAAAAGGAATTGGCACCTGAGGGGGTCGAACCCGCGGGAGCTCTAGATTCAAAAGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCYCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCACCGCTTTTTTCTCCGAAAAAAGAAGAGTATTGTTACAAAATCAGAACGTCATCATATTCGAAACATCCAAATTGCAGAGATCAAAATAGGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAATGAGGAAGAAGTGGT</pcr_primer_p1>
		<pcr_primer_p2>GAACAGATGTTTTCTCAAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>CACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTC</canonical_amplicon>
		<polymorphic_amplicon>CACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCYCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12929</snp_id>
        <super_contig>c006700934.Contig1</super_contig>
        <contig_pos>67185</contig_pos>
        <strand>+</strand>
        <context>AARGCGTTYY[C/T]YCCCCCCATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCC</left_flank>
        <right_flank>CCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTAATTTCATTGCAAAACTTACTATCTAATCATTCTTTTTTTGAAAACTGGCAATTCTGCAAAATTCTCTTTTTTCAACTTTTTCTAGAATTTTCTCTTCTTTCCCACAGGTTCTTTGATTTTTTGGCGCTTTTTGTCTCTCGAAGGCAACAAGTTATTTACAAGTAGCACTTTTCCGTTTGGCATGGGAAAATGAGCTTGTGGACCCGTGAGAACCTTCTAGACACCTGAAAATGTCTCAAGCAAAAAGAAAAAAGGAATTGGCACCTGAGGGGGTCGAACCCGCGGGAGCTCTAGATTCAAAAGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCACCGCTTTTTTCTCCGAAAAAAGAAGAGTATTGTTACAAAATCAGAACGTCATCATATTCGAAACATCCAAATTGCAGAGATCAAAATAGGAAA</canonical>
            <polymorphic>GGTAATTTCATTGCAAAACTTACTATCTAATCATTCTTTTTTTGAAAACTGGCAATTCTGCAAAATTCTCTTTTTTCAACTTTTTCTAGAATTTTCTCTTCTTTCCCACAGGTTCTTTGATTTTTTGGCGCTTTTTGTCTCTCGAAGGCAACAAGTTATTTACAAGTAGCACTTTTCCGTTTGGCATGGGAAAATGAGCTTGTGGACCCGTGAGAACCTTCTAGACACCTGAAAATGTCTCAAGCAAAAAGAAAAAAGGAATTGGCACCTGAGGGGGTCGAACCCGCGGGAGCTCTAGATTCAAAAGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCYCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCACCGCTTTTTTCTCCGAAAAAAGAAGAGTATTGTTACAAAATCAGAACGTCATCATATTCGAAACATCCAAATTGCAGAGATCAAAATAGGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAATGAGGAAGAAGTGGT</pcr_primer_p1>
		<pcr_primer_p2>GAACAGATGTTTTCTCAAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>CACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTC</canonical_amplicon>
		<polymorphic_amplicon>CACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCYCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12930</snp_id>
        <super_contig>c006700934.Contig1</super_contig>
        <contig_pos>67184</contig_pos>
        <strand>+</strand>
        <context>AAARGCGTTY[C/T]YYCCCCCCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTC</left_flank>
        <right_flank>CCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGTAATTTCATTGCAAAACTTACTATCTAATCATTCTTTTTTTGAAAACTGGCAATTCTGCAAAATTCTCTTTTTTCAACTTTTTCTAGAATTTTCTCTTCTTTCCCACAGGTTCTTTGATTTTTTGGCGCTTTTTGTCTCTCGAAGGCAACAAGTTATTTACAAGTAGCACTTTTCCGTTTGGCATGGGAAAATGAGCTTGTGGACCCGTGAGAACCTTCTAGACACCTGAAAATGTCTCAAGCAAAAAGAAAAAAGGAATTGGCACCTGAGGGGGTCGAACCCGCGGGAGCTCTAGATTCAAAAGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCACCGCTTTTTTCTCCGAAAAAAGAAGAGTATTGTTACAAAATCAGAACGTCATCATATTCGAAACATCCAAATTGCAGAGATCAAAATAGGAA</canonical>
            <polymorphic>CGGTAATTTCATTGCAAAACTTACTATCTAATCATTCTTTTTTTGAAAACTGGCAATTCTGCAAAATTCTCTTTTTTCAACTTTTTCTAGAATTTTCTCTTCTTTCCCACAGGTTCTTTGATTTTTTGGCGCTTTTTGTCTCTCGAAGGCAACAAGTTATTTACAAGTAGCACTTTTCCGTTTGGCATGGGAAAATGAGCTTGTGGACCCGTGAGAACCTTCTAGACACCTGAAAATGTCTCAAGCAAAAAGAAAAAAGGAATTGGCACCTGAGGGGGTCGAACCCGCGGGAGCTCTAGATTCAAAAGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCYCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCACCGCTTTTTTCTCCGAAAAAAGAAGAGTATTGTTACAAAATCAGAACGTCATCATATTCGAAACATCCAAATTGCAGAGATCAAAATAGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAATGAGGAAGAAGTGGT</pcr_primer_p1>
		<pcr_primer_p2>GAACAGATGTTTTCTCAAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>CACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTC</canonical_amplicon>
		<polymorphic_amplicon>CACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCYCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12931</snp_id>
        <super_contig>c006700934.Contig1</super_contig>
        <contig_pos>67177</contig_pos>
        <strand>+</strand>
        <context>GCGTTTTAAA[A/G]GCGTTYYYYC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAA</left_flank>
        <right_flank>GCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATAATCGGTAATTTCATTGCAAAACTTACTATCTAATCATTCTTTTTTTGAAAACTGGCAATTCTGCAAAATTCTCTTTTTTCAACTTTTTCTAGAATTTTCTCTTCTTTCCCACAGGTTCTTTGATTTTTTGGCGCTTTTTGTCTCTCGAAGGCAACAAGTTATTTACAAGTAGCACTTTTCCGTTTGGCATGGGAAAATGAGCTTGTGGACCCGTGAGAACCTTCTAGACACCTGAAAATGTCTCAAGCAAAAAGAAAAAAGGAATTGGCACCTGAGGGGGTCGAACCCGCGGGAGCTCTAGATTCAAAAGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCACCGCTTTTTTCTCCGAAAAAAGAAGAGTATTGTTACAAAATCAGAACGTCATCATATTCGAAACATCCAAATTGCAGAGATCAAA</canonical>
            <polymorphic>AGATAATCGGTAATTTCATTGCAAAACTTACTATCTAATCATTCTTTTTTTGAAAACTGGCAATTCTGCAAAATTCTCTTTTTTCAACTTTTTCTAGAATTTTCTCTTCTTTCCCACAGGTTCTTTGATTTTTTGGCGCTTTTTGTCTCTCGAAGGCAACAAGTTATTTACAAGTAGCACTTTTCCGTTTGGCATGGGAAAATGAGCTTGTGGACCCGTGAGAACCTTCTAGACACCTGAAAATGTCTCAAGCAAAAAGAAAAAAGGAATTGGCACCTGAGGGGGTCGAACCCGCGGGAGCTCTAGATTCAAAAGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAARGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCACCGCTTTTTTCTCCGAAAAAAGAAGAGTATTGTTACAAAATCAGAACGTCATCATATTCGAAACATCCAAATTGCAGAGATCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAATGAGGAAGAAGTGGT</pcr_primer_p1>
		<pcr_primer_p2>GGTCATTTTCTCTCAAATAAACA</pcr_primer_p2>
		<pcr_amplicon_size>214</pcr_amplicon_size>
		<canonical_amplicon>CACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACC</canonical_amplicon>
		<polymorphic_amplicon>CACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAARGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12933</snp_id>
        <super_contig>c006700934.Contig1</super_contig>
        <contig_pos>67101</contig_pos>
        <strand>+</strand>
        <context>GGAGGCGAGT[A/G]GGTGWAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGT</left_flank>
        <right_flank>GGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAGTTTGAAAGAGAGTTTTGACCGTTTTCTGATCTTATCTATCCCATTTTCCAGAATTAAACTTTTTTCTGATAAGATAATCGGTAATTTCATTGCAAAACTTACTATCTAATCATTCTTTTTTTGAAAACTGGCAATTCTGCAAAATTCTCTTTTTTCAACTTTTTCTAGAATTTTCTCTTCTTTCCCACAGGTTCTTTGATTTTTTGGCGCTTTTTGTCTCTCGAAGGCAACAAGTTATTTACAAGTAGCACTTTTCCGTTTGGCATGGGAAAATGAGCTTGTGGACCCGTGAGAACCTTCTAGACACCTGAAAATGTCTCAAGCAAAAAGAAAAAAGGAATTGGCACCTGAGGGGGTCGAACCCGCGGGAGCTCTAGATTCAAAAGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCACCGCTTTTT</canonical>
            <polymorphic>AATAGTTTGAAAGAGAGTTTTGACCGTTTTCTGATCTTATCTATCCCATTTTCCAGAATTAAACTTTTTTCTGATAAGATAATCGGTAATTTCATTGCAAAACTTACTATCTAATCATTCTTTTTTTGAAAACTGGCAATTCTGCAAAATTCTCTTTTTTCAACTTTTTCTAGAATTTTCTCTTCTTTCCCACAGGTTCTTTGATTTTTTGGCGCTTTTTGTCTCTCGAAGGCAACAAGTTATTTACAAGTAGCACTTTTCCGTTTGGCATGGGAAAATGAGCTTGTGGACCCGTGAGAACCTTCTAGACACCTGAAAATGTCTCAAGCAAAAAGAAAAAAGGAATTGGCACCTGAGGGGGTCGAACCCGCGGGAGCTCTAGATTCAAAAGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTRGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCACCGCTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAATGAGGAAGAAGTGGT</pcr_primer_p1>
		<pcr_primer_p2>GGTCATTTTCTCTCAAATAAACA</pcr_primer_p2>
		<pcr_amplicon_size>214</pcr_amplicon_size>
		<canonical_amplicon>CACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACC</canonical_amplicon>
		<polymorphic_amplicon>CACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTRGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12934</snp_id>
        <super_contig>c006700934.Contig1</super_contig>
        <contig_pos>67090</contig_pos>
        <strand>+</strand>
        <context>GGGGTGCGGR[A/G]GGAGGCGAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGG</left_flank>
        <right_flank>GGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGCTAAAAAATAGTTTGAAAGAGAGTTTTGACCGTTTTCTGATCTTATCTATCCCATTTTCCAGAATTAAACTTTTTTCTGATAAGATAATCGGTAATTTCATTGCAAAACTTACTATCTAATCATTCTTTTTTTGAAAACTGGCAATTCTGCAAAATTCTCTTTTTTCAACTTTTTCTAGAATTTTCTCTTCTTTCCCACAGGTTCTTTGATTTTTTGGCGCTTTTTGTCTCTCGAAGGCAACAAGTTATTTACAAGTAGCACTTTTCCGTTTGGCATGGGAAAATGAGCTTGTGGACCCGTGAGAACCTTCTAGACACCTGAAAATGTCTCAAGCAAAAAGAAAAAAGGAATTGGCACCTGAGGGGGTCGAACCCGCGGGAGCTCTAGATTCAAAAGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGC</canonical>
            <polymorphic>AAAAGCTAAAAAATAGTTTGAAAGAGAGTTTTGACCGTTTTCTGATCTTATCTATCCCATTTTCCAGAATTAAACTTTTTTCTGATAAGATAATCGGTAATTTCATTGCAAAACTTACTATCTAATCATTCTTTTTTTGAAAACTGGCAATTCTGCAAAATTCTCTTTTTTCAACTTTTTCTAGAATTTTCTCTTCTTTCCCACAGGTTCTTTGATTTTTTGGCGCTTTTTGTCTCTCGAAGGCAACAAGTTATTTACAAGTAGCACTTTTCCGTTTGGCATGGGAAAATGAGCTTGTGGACCCGTGAGAACCTTCTAGACACCTGAAAATGTCTCAAGCAAAAAGAAAAAAGGAATTGGCACCTGAGGGGGTCGAACCCGCGGGAGCTCTAGATTCAAAAGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGRGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAATGAGGAAGAAGTGGT</pcr_primer_p1>
		<pcr_primer_p2>GGTCATTTTCTCTCAAATAAACA</pcr_primer_p2>
		<pcr_amplicon_size>214</pcr_amplicon_size>
		<canonical_amplicon>CACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACC</canonical_amplicon>
		<polymorphic_amplicon>CACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGRGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12935</snp_id>
        <super_contig>c006700934.Contig1</super_contig>
        <contig_pos>67089</contig_pos>
        <strand>+</strand>
        <context>AGGGGTGCGG[A/G]RGGAGGCGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGG</left_flank>
        <right_flank>AGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAGCTAAAAAATAGTTTGAAAGAGAGTTTTGACCGTTTTCTGATCTTATCTATCCCATTTTCCAGAATTAAACTTTTTTCTGATAAGATAATCGGTAATTTCATTGCAAAACTTACTATCTAATCATTCTTTTTTTGAAAACTGGCAATTCTGCAAAATTCTCTTTTTTCAACTTTTTCTAGAATTTTCTCTTCTTTCCCACAGGTTCTTTGATTTTTTGGCGCTTTTTGTCTCTCGAAGGCAACAAGTTATTTACAAGTAGCACTTTTCCGTTTGGCATGGGAAAATGAGCTTGTGGACCCGTGAGAACCTTCTAGACACCTGAAAATGTCTCAAGCAAAAAGAAAAAAGGAATTGGCACCTGAGGGGGTCGAACCCGCGGGAGCTCTAGATTCAAAAGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCG</canonical>
            <polymorphic>CAAAAGCTAAAAAATAGTTTGAAAGAGAGTTTTGACCGTTTTCTGATCTTATCTATCCCATTTTCCAGAATTAAACTTTTTTCTGATAAGATAATCGGTAATTTCATTGCAAAACTTACTATCTAATCATTCTTTTTTTGAAAACTGGCAATTCTGCAAAATTCTCTTTTTTCAACTTTTTCTAGAATTTTCTCTTCTTTCCCACAGGTTCTTTGATTTTTTGGCGCTTTTTGTCTCTCGAAGGCAACAAGTTATTTACAAGTAGCACTTTTCCGTTTGGCATGGGAAAATGAGCTTGTGGACCCGTGAGAACCTTCTAGACACCTGAAAATGTCTCAAGCAAAAAGAAAAAAGGAATTGGCACCTGAGGGGGTCGAACCCGCGGGAGCTCTAGATTCAAAAGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGRAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAATGAGGAAGAAGTGGT</pcr_primer_p1>
		<pcr_primer_p2>GGTCATTTTCTCTCAAATAAACA</pcr_primer_p2>
		<pcr_amplicon_size>214</pcr_amplicon_size>
		<canonical_amplicon>CACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACC</canonical_amplicon>
		<polymorphic_amplicon>CACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGRAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12936</snp_id>
        <super_contig>c006700934.Contig1</super_contig>
        <contig_pos>67065</contig_pos>
        <strand>+</strand>
        <context>GAAGGAGCGC[A/G]GAACGKGGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGC</left_flank>
        <right_flank>GAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTACCCCAGTTTTTTGTAGTTTCAAAAGCTAAAAAATAGTTTGAAAGAGAGTTTTGACCGTTTTCTGATCTTATCTATCCCATTTTCCAGAATTAAACTTTTTTCTGATAAGATAATCGGTAATTTCATTGCAAAACTTACTATCTAATCATTCTTTTTTTGAAAACTGGCAATTCTGCAAAATTCTCTTTTTTCAACTTTTTCTAGAATTTTCTCTTCTTTCCCACAGGTTCTTTGATTTTTTGGCGCTTTTTGTCTCTCGAAGGCAACAAGTTATTTACAAGTAGCACTTTTCCGTTTGGCATGGGAAAATGAGCTTGTGGACCCGTGAGAACCTTCTAGACACCTGAAAATGTCTCAAGCAAAAAGAAAAAAGGAATTGGCACCTGAGGGGGTCGAACCCGCGGGAGCTCTAGATTCAAAAGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAA</canonical>
            <polymorphic>GTTTACCCCAGTTTTTTGTAGTTTCAAAAGCTAAAAAATAGTTTGAAAGAGAGTTTTGACCGTTTTCTGATCTTATCTATCCCATTTTCCAGAATTAAACTTTTTTCTGATAAGATAATCGGTAATTTCATTGCAAAACTTACTATCTAATCATTCTTTTTTTGAAAACTGGCAATTCTGCAAAATTCTCTTTTTTCAACTTTTTCTAGAATTTTCTCTTCTTTCCCACAGGTTCTTTGATTTTTTGGCGCTTTTTGTCTCTCGAAGGCAACAAGTTATTTACAAGTAGCACTTTTCCGTTTGGCATGGGAAAATGAGCTTGTGGACCCGTGAGAACCTTCTAGACACCTGAAAATGTCTCAAGCAAAAAGAAAAAAGGAATTGGCACCTGAGGGGGTCGAACCCGCGGGAGCTCTAGATTCAAAAGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCRGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>406 329 173 46 44 2</canonical_bands>
                <polymorphic_bands>406 329 217 46 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTAGCACTTTTCCGTTTG</pcr_primer_p1>
		<pcr_primer_p2>TTAAAACGCAATTTCAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>AAGTAGCACTTTTCCGTTTGGCATGGGAAAATGAGCTTGTGGACCCGTGAGAACCTTCTAGACACCTGAAAATGTCTCAAGCAAAAAGAAAAAAGGAATTGGCACCTGAGGGGGTCGAACCCGCGGGAGCTCTAGATTCAAAAGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAA</canonical_amplicon>
		<polymorphic_amplicon>AAGTAGCACTTTTCCGTTTGGCATGGGAAAATGAGCTTGTGGACCCGTGAGAACCTTCTAGACACCTGAAAATGTCTCAAGCAAAAAGAAAAAAGGAATTGGCACCTGAGGGGGTCGAACCCGCGGGAGCTCTAGATTCAAAAGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCRGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12937</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>71526</contig_pos>
        <strand>+</strand>
        <context>TCAATTTTCT[A/G]CAGCGAGGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGGGAGTCATAATTTGGTCTAATTTTCTTTAAACTAGGTCAATTTTCT</left_flank>
        <right_flank>CAGCGAGGTCGAAGTTCAAAGCAGTTGCATAAATAAAATCCTTTCAGATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCGTAAAAGTTGCCTCAAAACCCCATGAGTTCAAAAAAAGAAACTTCAATTCAGTGGTTTTTAAGCCCCTTGAAATATGGCTCATACATCTTCAAAACGTTAGAAAATTTTGGCGTACACAAAACAAAACTAGTGCTTCATTTTTGTAGTTGACAACTTTTTTGTAATATGGAATCCTGAAAAGATATGACGCGTTGAAAAAGGCAAGTTTTATTTTGGTATTGTTTGGCAGTAGCAAAATTGATTTTGCACCTGCTTGGCAGTACCAAAGTTAAGCACACCGGCTGTTCAAACGCTCATAACTTTCTTCAAAATCATCAAAACTGAAAATAAATGTATGATATGAAATCTCAATTTTTTGCTGATTCGAATTGTATAACATTTCAATGCGCTACATCAGAATTGGTCAAGTTAGAAGAACTTAAACACAAGTAGTGTGGAAATCTCTTTTGGGAGTCATAATTTGGTCTAATTTTCTTTAAACTAGGTCAATTTTCTGCAGCGAGGTCGAAGTTCAAAGCAGTTGCATAAATAAAATCCTTTCAGATCGAACAGGAAGACTACGTGCTCTCCTCTCCACTAGTCAGTTGCCTAGATATCAATGGCGAAACAGCACTTCATGAAGCCTGTCTCGCTGGAAAATTCGATTGTGTTTTATCTCTTATCAAGGCAAGAAGTGCAGCTAACGCATTCGGACGACTCGGAAGAACTCCATTAGATTGTGCCGAGAAATATGAGCAAGGTCCGCAGAGCATGCTCATTATTGACTATTTGAAATCGGAGGGTGCGTTGACCTTTGAGGAATTGAGAATTGTTGCGGCAAAGATTCTTCAAAAACATTGGAGGAATCGAAAAACGAATCGGTTGGAGGCACTGAAAAATGCGAAAAAATAGTTTTTTGAAGATTTTGGACTCAGGAAATGTTATATTATTTATTTTAAATTTTTTTGTATTATCGTCTTCACCTCGTCACATTCATATCAAAATATCCTTCACACT</canonical>
            <polymorphic>GCCGTAAAAGTTGCCTCAAAACCCCATGAGTTCAAAAAAAGAAACTTCAATTCAGTGGTTTTTAAGCCCCTTGAAATATGGCTCATACATCTTCAAAACGTTAGAAAATTTTGGCGTACACAAAACAAAACTAGTGCTTCATTTTTGTAGTTGACAACTTTTTTGTAATATGGAATCCTGAAAAGATATGACGCGTTGAAAAAGGCAAGTTTTATTTTGGTATTGTTTGGCAGTAGCAAAATTGATTTTGCACCTGCTTGGCAGTACCAAAGTTAAGCACACCGGCTGTTCAAACGCTCATAACTTTCTTCAAAATCATCAAAACTGAAAATAAATGTATGATATGAAATCTCAATTTTTTGCTGATTCGAATTGTATAACATTTCAATGCGCTACATCAGAATTGGTCAAGTTAGAAGAACTTAAACACAAGTAGTGTGGAAATCTCTTTTGGGAGTCATAATTTGGTCTAATTTTCTTTAAACTAGGTCAATTTTCTRCAGCGAGGTCGAAGTTCAAAGCAGTTGCATAAATAAAATCCTTTCAGATCGAACAGGAAGACTACGTGCTCTCCTCTCCACTAGTCAGTTGCCTAGATATCAATGGCGAAACAGCACTTCATGAAGCCTGTCTCGCTGGAAAATTCGATTGTGTTTTATCTCTTATCAAGGCAAGAAGTGCAGCTAACGCATTCGGACGACTCGGAAGAACTCCATTAGATTGTGCCGAGAAATATGAGCAAGGTCCGCAGAGCATGCTCATTATTGACTATTTGAAATCGGAGGGTGCGTTGACCTTTGAGGAATTGAGAATTGTTGCGGCAAAGATTCTTCAAAAACATTGGAGGAATCGAAAAACGAATCGGTTGGAGGCACTGAAAAATGCGAAAAAATAGTTTTTTGAAGATTTTGGACTCAGGAAATGTTATATTATTTATTTTAAATTTTTTTGTATTATCGTCTTCACCTCGTCACATTCATATCAAAATATCCTTCACACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTGCAG</site>
                <isoschizomers>
                    <enzyme>BloHII</enzyme>
                    <enzyme>BstMAI</enzyme>
                    <enzyme>PstI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>503 180 179 138</canonical_bands>
                <polymorphic_bands>683 179 138</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>320 250 250 153 27</canonical_bands>
                <polymorphic_bands>320 277 250 153</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>500 320 180</canonical_bands>
                <polymorphic_bands>680 320</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACAAGTAGTGTGGAAATCTCTT</pcr_primer_p1>
		<pcr_primer_p2>TCTTGCCTTGATAAGAGATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CACAAGTAGTGTGGAAATCTCTTTTGGGAGTCATAATTTGGTCTAATTTTCTTTAAACTAGGTCAATTTTCTGCAGCGAGGTCGAAGTTCAAAGCAGTTGCATAAATAAAATCCTTTCAGATCGAACAGGAAGACTACGTGCTCTCCTCTCCACTAGTCAGTTGCCTAGATATCAATGGCGAAACAGCACTTCATGAAGCCTGTCTCGCTGGAAAATTCGATTGTGTTTTATCTCTTATCAAGGCAAGA</canonical_amplicon>
		<polymorphic_amplicon>CACAAGTAGTGTGGAAATCTCTTTTGGGAGTCATAATTTGGTCTAATTTTCTTTAAACTAGGTCAATTTTCTRCAGCGAGGTCGAAGTTCAAAGCAGTTGCATAAATAAAATCCTTTCAGATCGAACAGGAAGACTACGTGCTCTCCTCTCCACTAGTCAGTTGCCTAGATATCAATGGCGAAACAGCACTTCATGAAGCCTGTCTCGCTGGAAAATTCGATTGTGTTTTATCTCTTATCAAGGCAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12938</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>74169</contig_pos>
        <strand>+</strand>
        <context>ATTARGCATA[A/G]TTTCTTTAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACTCGTATATGGTCATCATATCGGCTCGGTAAGAGGGAAATTAGGCATA</left_flank>
        <right_flank>TTTCTTTAATGCTTACAAAACTCAAGAACTACAAAATGACACTATTTGGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGACACTTGTACAAAAATAGGCCAAAATGGGTTTCCTTCAGTAATTGACAAATAATTGGGGAACTAGGAATTTTCAAAAAATTCTGTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACACCCTTCAAAGTTTTCAAAGTGATCCGAAACTTAACAGTCAAGCTCCACACTTCTGAAAATGAACAAATATCAACTGAAATATGTTTTTTTTCTGTATATTTATAGACCGGTACATGGAAAATAATGTCGAGGGAAAAAATTTGAATTCCAGAATCCGATCCTCCAGTTTACTATTGCCCCAACAAGGCGTGCTACCAAATCATGCCAATCCCAAAAACTTGGCTCGACGCCAGAGTTTCGTGCTCAAAAAATTCCAACTCCAGTTTGATCAGTATGAAAAGTAATGATACTAAAAATGTGCAGAAATTGATGACCAAATTCAATTTGACTCGTATATGGTCATCATATCGGCTCGGTAAGAGGGAAATTAGGCATAGTTTCTTTAATGCTTACAAAACTCAAGAACTACAAAATGACACTATTTGGAATACTGTATCTTGTCTATGAACCAAGTTACAAGCCAAAAACCATCTGAGTTACGCCGTGGTCTATGTAACTTCGTTCATAGATAAGATATACTATTCCTAATAGTAATATTTTGTAGTATTTGTCGACTTCTGCCAAATTCACACTTTAAGAAAAAGTTACTTGCAGTTTTCCAGTTGTTACAGCTAGATGCATGTATGTTTTTGGATGGATCAAATCTGAATTGGGTGAGCACAAGTTGTTTGGATAATATAACCTACTTTTGTGAAATGCCTCAATTGTCTAGCAACCAACAAGGAATAATTGATAAAAGGATTTCCAATTTTTGAAATGCTCATTTTATAATATTTAAAGAATTCTTGATTAAAAATCTTTGATATTCGATGAAGCTATTACGATTTTTCGAAAACTGATGATAATAGAAAAATTGAGTTGATAATGGGAAGTTTGA</canonical>
            <polymorphic>GAAGACACTTGTACAAAAATAGGCCAAAATGGGTTTCCTTCAGTAATTGACAAATAATTGGGGAACTAGGAATTTTCAAAAAATTCTGTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACACCCTTCAAAGTTTTCAAAGTGATCCGAAACTTAACAGTCAAGCTCCACACTTCTGAAAATGAACAAATATCAACTGAAATATGTTTTTTTTCTGTATATTTATAGACCGGTACATGGAAAATAATGTCGAGGGAAAAAATTTGAATTCCAGAATCCGATCCTCCAGTTTACTATTGCCCCAACAAGGCGTGCTACCAAATCATGCCAATCCCAAAAACTTGGCTCGACGCCAGAGTTTCGTGCTCAAAAAATTCCAACTCCAGTTTGATCAGTATGAAAAGTAATGATACTAAAAATGTGCAGAAATTGATGACCAAATTCAATTTGACTCGTATATGGTCATCATATCGGCTCGGTAAGAGGGAAATTAGGCATARTTTCTTTAATGCTTACAAAACTCAAGAACTACAAAATGACACTATTTGGAATACTGTATCTTGTCTATGAACCAAGTTACAAGCCAAAAACCATCTGAGTTACGCCGTGGTCTATGTAACTTCGTTCATAGATAAGATATACTATTCCTAATAGTAATATTTTGTAGTATTTGTCGACTTCTGCCAAATTCACACTTTAAGAAAAAGTTACTTGCAGTTTTCCAGTTGTTACAGCTAGATGCATGTATGTTTTTGGATGGATCAAATCTGAATTGGGTGAGCACAAGTTGTTTGGATAATATAACCTACTTTTGTGAAATGCCTCAATTGTCTAGCAACCAACAAGGAATAATTGATAAAAGGATTTCCAATTTTTGAAATGCTCATTTTATAATATTTAAAGAATTCTTGATTAAAAATCTTTGATATTCGATGAAGCTATTACGATTTTTCGAAAACTGATGATAATAGAAAAATTGAGTTGATAATGGGAAGTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCAATTTGACTCGTATATGG</pcr_primer_p1>
		<pcr_primer_p2>TGCAAGTAACTTTTTCTTAAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>AATTCAATTTGACTCGTATATGGTCATCATATCGGCTCGGTAAGAGGGAAATTAGGCATAGTTTCTTTAATGCTTACAAAACTCAAGAACTACAAAATGACACTATTTGGAATACTGTATCTTGTCTATGAACCAAGTTACAAGCCAAAAACCATCTGAGTTACGCCGTGGTCTATGTAACTTCGTTCATAGATAAGATATACTATTCCTAATAGTAATATTTTGTAGTATTTGTCGACTTCTGCCAAATTCACACTTTAAGAAAAAGTTACTTGCA</canonical_amplicon>
		<polymorphic_amplicon>AATTCAATTTGACTCGTATATGGTCATCATATCGGCTCGGTAAGAGGGAAATTAGGCATARTTTCTTTAATGCTTACAAAACTCAAGAACTACAAAATGACACTATTTGGAATACTGTATCTTGTCTATGAACCAAGTTACAAGCCAAAAACCATCTGAGTTACGCCGTGGTCTATGTAACTTCGTTCATAGATAAGATATACTATTCCTAATAGTAATATTTTGTAGTATTTGTCGACTTCTGCCAAATTCACACTTTAAGAAAAAGTTACTTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12939</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>74163</contig_pos>
        <strand>+</strand>
        <context>AGGGAAATTA[A/G]GCATARTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATTTGACTCGTATATGGTCATCATATCGGCTCGGTAAGAGGGAAATTA</left_flank>
        <right_flank>GCATAGTTTCTTTAATGCTTACAAAACTCAAGAACTACAAAATGACACTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGGGAAGACACTTGTACAAAAATAGGCCAAAATGGGTTTCCTTCAGTAATTGACAAATAATTGGGGAACTAGGAATTTTCAAAAAATTCTGTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACACCCTTCAAAGTTTTCAAAGTGATCCGAAACTTAACAGTCAAGCTCCACACTTCTGAAAATGAACAAATATCAACTGAAATATGTTTTTTTTCTGTATATTTATAGACCGGTACATGGAAAATAATGTCGAGGGAAAAAATTTGAATTCCAGAATCCGATCCTCCAGTTTACTATTGCCCCAACAAGGCGTGCTACCAAATCATGCCAATCCCAAAAACTTGGCTCGACGCCAGAGTTTCGTGCTCAAAAAATTCCAACTCCAGTTTGATCAGTATGAAAAGTAATGATACTAAAAATGTGCAGAAATTGATGACCAAATTCAATTTGACTCGTATATGGTCATCATATCGGCTCGGTAAGAGGGAAATTAGGCATAGTTTCTTTAATGCTTACAAAACTCAAGAACTACAAAATGACACTATTTGGAATACTGTATCTTGTCTATGAACCAAGTTACAAGCCAAAAACCATCTGAGTTACGCCGTGGTCTATGTAACTTCGTTCATAGATAAGATATACTATTCCTAATAGTAATATTTTGTAGTATTTGTCGACTTCTGCCAAATTCACACTTTAAGAAAAAGTTACTTGCAGTTTTCCAGTTGTTACAGCTAGATGCATGTATGTTTTTGGATGGATCAAATCTGAATTGGGTGAGCACAAGTTGTTTGGATAATATAACCTACTTTTGTGAAATGCCTCAATTGTCTAGCAACCAACAAGGAATAATTGATAAAAGGATTTCCAATTTTTGAAATGCTCATTTTATAATATTTAAAGAATTCTTGATTAAAAATCTTTGATATTCGATGAAGCTATTACGATTTTTCGAAAACTGATGATAATAGAAAAATTGAGTTGATAATGGGAA</canonical>
            <polymorphic>TTTTGGGAAGACACTTGTACAAAAATAGGCCAAAATGGGTTTCCTTCAGTAATTGACAAATAATTGGGGAACTAGGAATTTTCAAAAAATTCTGTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACACCCTTCAAAGTTTTCAAAGTGATCCGAAACTTAACAGTCAAGCTCCACACTTCTGAAAATGAACAAATATCAACTGAAATATGTTTTTTTTCTGTATATTTATAGACCGGTACATGGAAAATAATGTCGAGGGAAAAAATTTGAATTCCAGAATCCGATCCTCCAGTTTACTATTGCCCCAACAAGGCGTGCTACCAAATCATGCCAATCCCAAAAACTTGGCTCGACGCCAGAGTTTCGTGCTCAAAAAATTCCAACTCCAGTTTGATCAGTATGAAAAGTAATGATACTAAAAATGTGCAGAAATTGATGACCAAATTCAATTTGACTCGTATATGGTCATCATATCGGCTCGGTAAGAGGGAAATTARGCATAGTTTCTTTAATGCTTACAAAACTCAAGAACTACAAAATGACACTATTTGGAATACTGTATCTTGTCTATGAACCAAGTTACAAGCCAAAAACCATCTGAGTTACGCCGTGGTCTATGTAACTTCGTTCATAGATAAGATATACTATTCCTAATAGTAATATTTTGTAGTATTTGTCGACTTCTGCCAAATTCACACTTTAAGAAAAAGTTACTTGCAGTTTTCCAGTTGTTACAGCTAGATGCATGTATGTTTTTGGATGGATCAAATCTGAATTGGGTGAGCACAAGTTGTTTGGATAATATAACCTACTTTTGTGAAATGCCTCAATTGTCTAGCAACCAACAAGGAATAATTGATAAAAGGATTTCCAATTTTTGAAATGCTCATTTTATAATATTTAAAGAATTCTTGATTAAAAATCTTTGATATTCGATGAAGCTATTACGATTTTTCGAAAACTGATGATAATAGAAAAATTGAGTTGATAATGGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCAATTTGACTCGTATATGG</pcr_primer_p1>
		<pcr_primer_p2>TGCAAGTAACTTTTTCTTAAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>AATTCAATTTGACTCGTATATGGTCATCATATCGGCTCGGTAAGAGGGAAATTAGGCATAGTTTCTTTAATGCTTACAAAACTCAAGAACTACAAAATGACACTATTTGGAATACTGTATCTTGTCTATGAACCAAGTTACAAGCCAAAAACCATCTGAGTTACGCCGTGGTCTATGTAACTTCGTTCATAGATAAGATATACTATTCCTAATAGTAATATTTTGTAGTATTTGTCGACTTCTGCCAAATTCACACTTTAAGAAAAAGTTACTTGCA</canonical_amplicon>
		<polymorphic_amplicon>AATTCAATTTGACTCGTATATGGTCATCATATCGGCTCGGTAAGAGGGAAATTARGCATAGTTTCTTTAATGCTTACAAAACTCAAGAACTACAAAATGACACTATTTGGAATACTGTATCTTGTCTATGAACCAAGTTACAAGCCAAAAACCATCTGAGTTACGCCGTGGTCTATGTAACTTCGTTCATAGATAAGATATACTATTCCTAATAGTAATATTTTGTAGTATTTGTCGACTTCTGCCAAATTCACACTTTAAGAAAAAGTTACTTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12940</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>74515</contig_pos>
        <strand></strand>
        <context>CAACCAACAA[G/C]GAASAATTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>ATAATATAACCTACTTTTGTGAAATGCCTCAATTGTCTAGCAACCAACAA</left_flank>
        <right_flank>GAATAATTGATAAAAGGATTTCCAATTTTTGAAATGCTCATTTTATAATA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGACGCCAGAGTTTCGTGCTCAAAAAATTCCAACTCCAGTTTGATCAGTATGAAAAGTAATGATACTAAAAATGTGCAGAAATTGATGACCAAATTCAATTTGACTCGTATATGGTCATCATATCGGCTCGGTAAGAGGGAAATTAGGCATAGTTTCTTTAATGCTTACAAAACTCAAGAACTACAAAATGACACTATTTGGAATACTGTATCTTGTCTATGAACCAAGTTACAAGCCAAAAACCATCTGAGTTACGCCGTGGTCTATGTAACTTCGTTCATAGATAAGATATACTATTCCTAATAGTAATATTTTGTAGTATTTGTCGACTTCTGCCAAATTCACACTTTAAGAAAAAGTTACTTGCAGTTTTCCAGTTGTTACAGCTAGATGCATGTATGTTTTTGGATGGATCAAATCTGAATTGGGTGAGCACAAGTTGTTTGGATAATATAACCTACTTTTGTGAAATGCCTCAATTGTCTAGCAACCAACAAGGAATAATTGATAAAAGGATTTCCAATTTTTGAAATGCTCATTTTATAATATTTAAAGAATTCTTGATTAAAAATCTTTGATATTCGATGAAGCTATTACGATTTTTCGAAAACTGATGATAATAGAAAAATTGAGTTGATAATGGGAAGTTTGAGAAAAAATGTTGATCAACACTCTAATAGAACGCCACCCGGACCGTCCACTTTGAGCCTATATATCTCAGTTCCTTTGAAAGATATCAAAAAGTGATAAACTGATAAAATGTTTATTATGGTATCAGCAGCATTTCATTAGTTAACCACTTTTTGATATCTTTCACAGAAAATGAGATACACGGGCTCGAATTCGACGATTCGGCGTTCTATTAGAGTGTTTACGGTATTTGTAATTAGGAAAACATATCATATTTGAAAAAGCTGGAGATTTACAAAAATCAAGAGAATTGAGATCAAAATATTTTATTTATCAGAAATCCTTTTTTTTCATTCCTCAGGATCCAA</canonical>
            <polymorphic>TCGACGCCAGAGTTTCGTGCTCAAAAAATTCCAACTCCAGTTTGATCAGTATGAAAAGTAATGATACTAAAAATGTGCAGAAATTGATGACCAAATTCAATTTGACTCGTATATGGTCATCATATCGGCTCGGTAAGAGGGAAATTAGGCATAGTTTCTTTAATGCTTACAAAACTCAAGAACTACAAAATGACACTATTTGGAATACTGTATCTTGTCTATGAACCAAGTTACAAGCCAAAAACCATCTGAGTTACGCCGTGGTCTATGTAACTTCGTTCATAGATAAGATATACTATTCCTAATAGTAATATTTTGTAGTATTTGTCGACTTCTGCCAAATTCACACTTTAAGAAAAAGTTACTTGCAGTTTTCCAGTTGTTACAGCTAGATGCATGTATGTTTTTGGATGGATCAAATCTGAATTGGGTGAGCACAAGTTGTTTGGATAATATAACCTACTTTTGTGAAATGCCTCAATTGTCTAGCAACCAACAASGAATAATTGATAAAAGGATTTCCAATTTTTGAAATGCTCATTTTATAATATTTAAAGAATTCTTGATTAAAAATCTTTGATATTCGATGAAGCTATTACGATTTTTCGAAAACTGATGATAATAGAAAAATTGAGTTGATAATGGGAAGTTTGAGAAAAAATGTTGATCAACACTCTAATAGAACGCCACCCGGACCGTCCACTTTGAGCCTATATATCTCAGTTCCTTTGAAAGATATCAAAAAGTGATAAACTGATAAAATGTTTATTATGGTATCAGCAGCATTTCATTAGTTAACCACTTTTTGATATCTTTCACAGAAAATGAGATACACGGGCTCGAATTCGACGATTCGGCGTTCTATTAGAGTGTTTACGGTATTTGTAATTAGGAAAACATATCATATTTGAAAAAGCTGGAGATTTACAAAAATCAAGAGAATTGAGATCAAAATATTTTATTTATCAGAAATCCTTTTTTTTCATTCCTCAGGATCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAAAAGTTACTTGCAGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TCGTAATAGCTTCATCGAATATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGAAAAAGTTACTTGCAGTTTTCCAGTTGTTACAGCTAGATGCATGTATGTTTTTGGATGGATCAAATCTGAATTGGGTGAGCACAAGTTGTTTGGATAATATAACCTACTTTTGTGAAATGCCTCAATTGTCTAGCAACCAACAAGGAATAATTGATAAAAGGATTTCCAATTTTTGAAATGCTCATTTTATAATATTTAAAGAATTCTTGATTAAAAATCTTTGATATTCGATGAAGCTATTACGA</canonical_amplicon>
		<polymorphic_amplicon>AAGAAAAAGTTACTTGCAGTTTTCCAGTTGTTACAGCTAGATGCATGTATGTTTTTGGATGGATCAAATCTGAATTGGGTGAGCACAAGTTGTTTGGATAATATAACCTACTTTTGTGAAATGCCTCAATTGTCTAGCAACCAACAASGAATAATTGATAAAAGGATTTCCAATTTTTGAAATGCTCATTTTATAATATTTAAAGAATTCTTGATTAAAAATCTTTGATATTCGATGAAGCTATTACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12941</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>114263</contig_pos>
        <strand>+</strand>
        <context>TTTTTTGATT[C/T]CGAAATTTTM</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATT</left_flank>
        <right_flank>CGAAATTTTAAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCAAATGTTTTTCCTCTTGTTGCTGTTTTAAAAATGGGTCGGCCTCTCCGCCGATATGCTTCGAACCATTCATATTGATTGCGACCACTTCTGGCGGAGGTACGGGCTCTGGGAATTCTCGCTCCCTCCGTTGACAGCATAAATGTGTTACGACGCGCCAGATGACGACAAGGATCATGGAGGCGCAGAATGTGGTTATACTGAAATTATTATCTAAACATTTTCGAACATTCCAGGAGCATTTTAAGCTGAAGATCCCAAAAGTTGAACTATTTTGAAGAAAGTTATGGTCAATTGAAATTTTTGGAATCAAAGTTTTATGATTCCGAAATTTTCAAAATGTCATAACTTTTTTGGATATAGTCCATTTTGTTTGAAATGTTTATAAATTAAAATTTAGACAATTTCAGACATTTTAAGCCAAAGACCACAAAAAATGAACGTTTTTGAAAAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGTTCCTCGAGACATTTCCGGTCCTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATCGGAAATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGTTATCTTTTTGTATCCCTCTCCGCCTAGACGGCCTGAAAAGTTGAAAAAAATTGATTT</canonical>
            <polymorphic>CCCAAATGTTTTTCCTCTTGTTGCTGTTTTAAAAATGGGTCGGCCTCTCCGCCGATATGCTTCGAACCATTCATATTGATTGCGACCACTTCTGGCGGAGGTACGGGCTCTGGGAATTCTCGCTCCCTCCGTTGACAGCATAAATGTGTTACGACGCGCCAGATGACGACAAGGATCATGGAGGCGCAGAATGTGGTTATACTGAAATTATTATCTAAACATTTTCGAACATTCCAGGAGCATTTTAAGCTGAAGATCCCAAAAGTTGAACTATTTTGAAGAAAGTTATGGTCAATTGAAATTTTTGGAATCAAAGTTTTATGATTCCGAAATTTTCAAAATGTCATAACTTTTTTGGATATAGTCCATTTTGTTTGAAATGTTTATAAATTAAAATTTAGACAATTTCAGACATTTTAAGCCAAAGACCACAAAAAATGAACGTTTTTGAAAAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTYCGAAATTTTAAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGTTCCTCGAGACATTTCCGGTCCTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATCGGAAATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGTTATCTTTTTGTATCCCTCTCCGCCTAGACGGCCTGAAAAGTTGAAAAAAATTGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>414 275 163 86 62</canonical_bands>
                <polymorphic_bands>414 361 163 62</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>275 217 163 105 91 86 63</canonical_bands>
                <polymorphic_bands>361 217 163 105 91 63</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGGATATAGTCCATTTTGT</pcr_primer_p1>
		<pcr_primer_p2>AAAATCACACATTTTGAGCTAGA</pcr_primer_p2>
		<pcr_amplicon_size>225</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGGATATAGTCCATTTTGTTTGAAATGTTTATAAATTAAAATTTAGACAATTTCAGACATTTTAAGCCAAAGACCACAAAAAATGAACGTTTTTGAAAAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGGATATAGTCCATTTTGTTTGAAATGTTTATAAATTAAAATTTAGACAATTTCAGACATTTTAAGCCAAAGACCACAAAAAATGAACGTTTTTGAAAAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTYCGAAATTTTAAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12942</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>114273</contig_pos>
        <strand>+</strand>
        <context>YCGAAATTTT[A/C]AAAATGTCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTT</left_flank>
        <right_flank>AAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTGGTTTCTAGCT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCCTCTTGTTGCTGTTTTAAAAATGGGTCGGCCTCTCCGCCGATATGCTTCGAACCATTCATATTGATTGCGACCACTTCTGGCGGAGGTACGGGCTCTGGGAATTCTCGCTCCCTCCGTTGACAGCATAAATGTGTTACGACGCGCCAGATGACGACAAGGATCATGGAGGCGCAGAATGTGGTTATACTGAAATTATTATCTAAACATTTTCGAACATTCCAGGAGCATTTTAAGCTGAAGATCCCAAAAGTTGAACTATTTTGAAGAAAGTTATGGTCAATTGAAATTTTTGGAATCAAAGTTTTATGATTCCGAAATTTTCAAAATGTCATAACTTTTTTGGATATAGTCCATTTTGTTTGAAATGTTTATAAATTAAAATTTAGACAATTTCAGACATTTTAAGCCAAAGACCACAAAAAATGAACGTTTTTGAAAAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGTTCCTCGAGACATTTCCGGTCCTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATCGGAAATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGTTATCTTTTTGTATCCCTCTCCGCCTAGACGGCCTGAAAAGTTGAAAAAAATTGATTTCAGAAAAAGT</canonical>
            <polymorphic>TTTCCTCTTGTTGCTGTTTTAAAAATGGGTCGGCCTCTCCGCCGATATGCTTCGAACCATTCATATTGATTGCGACCACTTCTGGCGGAGGTACGGGCTCTGGGAATTCTCGCTCCCTCCGTTGACAGCATAAATGTGTTACGACGCGCCAGATGACGACAAGGATCATGGAGGCGCAGAATGTGGTTATACTGAAATTATTATCTAAACATTTTCGAACATTCCAGGAGCATTTTAAGCTGAAGATCCCAAAAGTTGAACTATTTTGAAGAAAGTTATGGTCAATTGAAATTTTTGGAATCAAAGTTTTATGATTCCGAAATTTTCAAAATGTCATAACTTTTTTGGATATAGTCCATTTTGTTTGAAATGTTTATAAATTAAAATTTAGACAATTTCAGACATTTTAAGCCAAAGACCACAAAAAATGAACGTTTTTGAAAAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTMAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGTTCCTCGAGACATTTCCGGTCCTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATCGGAAATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGTTATCTTTTTGTATCCCTCTCCGCCTAGACGGCCTGAAAAGTTGAAAAAAATTGATTTCAGAAAAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 479 20</canonical_bands>
                <polymorphic_bands>980 20</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 216 146 91 26 19</canonical_bands>
                <polymorphic_bands>593 216 146 26 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGGATATAGTCCATTTTGT</pcr_primer_p1>
		<pcr_primer_p2>AAAATCACACATTTTGAGCTAGA</pcr_primer_p2>
		<pcr_amplicon_size>225</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGGATATAGTCCATTTTGTTTGAAATGTTTATAAATTAAAATTTAGACAATTTCAGACATTTTAAGCCAAAGACCACAAAAAATGAACGTTTTTGAAAAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGGATATAGTCCATTTTGTTTGAAATGTTTATAAATTAAAATTTAGACAATTTCAGACATTTTAAGCCAAAGACCACAAAAAATGAACGTTTTTGAAAAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTMAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12943</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>114298</contig_pos>
        <strand>+</strand>
        <context>TCCTTCAAAA[C/T]AGCCTCAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAA</left_flank>
        <right_flank>AGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGTCGGCCTCTCCGCCGATATGCTTCGAACCATTCATATTGATTGCGACCACTTCTGGCGGAGGTACGGGCTCTGGGAATTCTCGCTCCCTCCGTTGACAGCATAAATGTGTTACGACGCGCCAGATGACGACAAGGATCATGGAGGCGCAGAATGTGGTTATACTGAAATTATTATCTAAACATTTTCGAACATTCCAGGAGCATTTTAAGCTGAAGATCCCAAAAGTTGAACTATTTTGAAGAAAGTTATGGTCAATTGAAATTTTTGGAATCAAAGTTTTATGATTCCGAAATTTTCAAAATGTCATAACTTTTTTGGATATAGTCCATTTTGTTTGAAATGTTTATAAATTAAAATTTAGACAATTTCAGACATTTTAAGCCAAAGACCACAAAAAATGAACGTTTTTGAAAAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGTTCCTCGAGACATTTCCGGTCCTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATCGGAAATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGTTATCTTTTTGTATCCCTCTCCGCCTAGACGGCCTGAAAAGTTGAAAAAAATTGATTTCAGAAAAAGTTCAAAAATTAAGAAAATGGGAAAGG</canonical>
            <polymorphic>TGGGTCGGCCTCTCCGCCGATATGCTTCGAACCATTCATATTGATTGCGACCACTTCTGGCGGAGGTACGGGCTCTGGGAATTCTCGCTCCCTCCGTTGACAGCATAAATGTGTTACGACGCGCCAGATGACGACAAGGATCATGGAGGCGCAGAATGTGGTTATACTGAAATTATTATCTAAACATTTTCGAACATTCCAGGAGCATTTTAAGCTGAAGATCCCAAAAGTTGAACTATTTTGAAGAAAGTTATGGTCAATTGAAATTTTTGGAATCAAAGTTTTATGATTCCGAAATTTTCAAAATGTCATAACTTTTTTGGATATAGTCCATTTTGTTTGAAATGTTTATAAATTAAAATTTAGACAATTTCAGACATTTTAAGCCAAAGACCACAAAAAATGAACGTTTTTGAAAAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAAYAGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGTTCCTCGAGACATTTCCGGTCCTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATCGGAAATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGTTATCTTTTTGTATCCCTCTCCGCCTAGACGGCCTGAAAAGTTGAAAAAAATTGATTTCAGAAAAAGTTCAAAAATTAAGAAAATGGGAAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTGAAATTTTTGGAATCAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAGCAGGTAATTTTTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>GATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAAYAGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12944</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>114313</contig_pos>
        <strand>+</strand>
        <context>TCAAATTCTT[C/G]GTTTCTAGCT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCGAAATTTTAAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTT</left_flank>
        <right_flank>GTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCGATATGCTTCGAACCATTCATATTGATTGCGACCACTTCTGGCGGAGGTACGGGCTCTGGGAATTCTCGCTCCCTCCGTTGACAGCATAAATGTGTTACGACGCGCCAGATGACGACAAGGATCATGGAGGCGCAGAATGTGGTTATACTGAAATTATTATCTAAACATTTTCGAACATTCCAGGAGCATTTTAAGCTGAAGATCCCAAAAGTTGAACTATTTTGAAGAAAGTTATGGTCAATTGAAATTTTTGGAATCAAAGTTTTATGATTCCGAAATTTTCAAAATGTCATAACTTTTTTGGATATAGTCCATTTTGTTTGAAATGTTTATAAATTAAAATTTAGACAATTTCAGACATTTTAAGCCAAAGACCACAAAAAATGAACGTTTTTGAAAAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGTTCCTCGAGACATTTCCGGTCCTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATCGGAAATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGTTATCTTTTTGTATCCCTCTCCGCCTAGACGGCCTGAAAAGTTGAAAAAAATTGATTTCAGAAAAAGTTCAAAAATTAAGAAAATGGGAAAGGTTATTTTTCAAATGG</canonical>
            <polymorphic>GCCGATATGCTTCGAACCATTCATATTGATTGCGACCACTTCTGGCGGAGGTACGGGCTCTGGGAATTCTCGCTCCCTCCGTTGACAGCATAAATGTGTTACGACGCGCCAGATGACGACAAGGATCATGGAGGCGCAGAATGTGGTTATACTGAAATTATTATCTAAACATTTTCGAACATTCCAGGAGCATTTTAAGCTGAAGATCCCAAAAGTTGAACTATTTTGAAGAAAGTTATGGTCAATTGAAATTTTTGGAATCAAAGTTTTATGATTCCGAAATTTTCAAAATGTCATAACTTTTTTGGATATAGTCCATTTTGTTTGAAATGTTTATAAATTAAAATTTAGACAATTTCAGACATTTTAAGCCAAAGACCACAAAAAATGAACGTTTTTGAAAAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTSGTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGTTCCTCGAGACATTTCCGGTCCTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATCGGAAATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGTTATCTTTTTGTATCCCTCTCCGCCTAGACGGCCTGAAAAGTTGAAAAAAATTGATTTCAGAAAAAGTTCAAAAATTAAGAAAATGGGAAAGGTTATTTTTCAAATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTGAAATTTTTGGAATCAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAGCAGGTAATTTTTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>GATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTSGTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12945</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>114371</contig_pos>
        <strand>+</strand>
        <context>TATTCCAATC[A/G]AAAAGAATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATC</left_flank>
        <right_flank>AAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGGGAATTCTCGCTCCCTCCGTTGACAGCATAAATGTGTTACGACGCGCCAGATGACGACAAGGATCATGGAGGCGCAGAATGTGGTTATACTGAAATTATTATCTAAACATTTTCGAACATTCCAGGAGCATTTTAAGCTGAAGATCCCAAAAGTTGAACTATTTTGAAGAAAGTTATGGTCAATTGAAATTTTTGGAATCAAAGTTTTATGATTCCGAAATTTTCAAAATGTCATAACTTTTTTGGATATAGTCCATTTTGTTTGAAATGTTTATAAATTAAAATTTAGACAATTTCAGACATTTTAAGCCAAAGACCACAAAAAATGAACGTTTTTGAAAAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGTTCCTCGAGACATTTCCGGTCCTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATCGGAAATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGTTATCTTTTTGTATCCCTCTCCGCCTAGACGGCCTGAAAAGTTGAAAAAAATTGATTTCAGAAAAAGTTCAAAAATTAAGAAAATGGGAAAGGTTATTTTTCAAATGGAAAGGGTCTGAGAATAGAATGGAAACGCAGGAAAAAAAACTTGTAAAAGTACAGTTAA</canonical>
            <polymorphic>TCTGGGAATTCTCGCTCCCTCCGTTGACAGCATAAATGTGTTACGACGCGCCAGATGACGACAAGGATCATGGAGGCGCAGAATGTGGTTATACTGAAATTATTATCTAAACATTTTCGAACATTCCAGGAGCATTTTAAGCTGAAGATCCCAAAAGTTGAACTATTTTGAAGAAAGTTATGGTCAATTGAAATTTTTGGAATCAAAGTTTTATGATTCCGAAATTTTCAAAATGTCATAACTTTTTTGGATATAGTCCATTTTGTTTGAAATGTTTATAAATTAAAATTTAGACAATTTCAGACATTTTAAGCCAAAGACCACAAAAAATGAACGTTTTTGAAAAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCRAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGTTCCTCGAGACATTTCCGGTCCTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATCGGAAATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGTTATCTTTTTGTATCCCTCTCCGCCTAGACGGCCTGAAAAGTTGAAAAAAATTGATTTCAGAAAAAGTTCAAAAATTAAGAAAATGGGAAAGGTTATTTTTCAAATGGAAAGGGTCTGAGAATAGAATGGAAACGCAGGAAAAAAAACTTGTAAAAGTACAGTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTCTAGCTCAAAATGTGTGAT</pcr_primer_p1>
		<pcr_primer_p2>ACGCAAATATTGGTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGT</canonical_amplicon>
		<polymorphic_amplicon>GTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCRAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12958</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>114628</contig_pos>
        <strand>+</strand>
        <context>TACAATTCAT[C/T]GGAWATCCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGTCCTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCAT</left_flank>
        <right_flank>GGAAATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCATTTTGTTTGAAATGTTTATAAATTAAAATTTAGACAATTTCAGACATTTTAAGCCAAAGACCACAAAAAATGAACGTTTTTGAAAAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGTTCCTCGAGACATTTCCGGTCCTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATCGGAAATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGTTATCTTTTTGTATCCCTCTCCGCCTAGACGGCCTGAAAAGTTGAAAAAAATTGATTTCAGAAAAAGTTCAAAAATTAAGAAAATGGGAAAGGTTATTTTTCAAATGGAAAGGGTCTGAGAATAGAATGGAAACGCAGGAAAAAAAACTTGTAAAAGTACAGTTAAATTGTGATAATATGGGAAGTGAGTATATTCAAAAATTGAGAAAAGGACGATGTTCAAAATAACGGTTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGACGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCG</canonical>
            <polymorphic>CCATTTTGTTTGAAATGTTTATAAATTAAAATTTAGACAATTTCAGACATTTTAAGCCAAAGACCACAAAAAATGAACGTTTTTGAAAAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGTTCCTCGAGACATTTCCGGTCCTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATYGGAAATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGTTATCTTTTTGTATCCCTCTCCGCCTAGACGGCCTGAAAAGTTGAAAAAAATTGATTTCAGAAAAAGTTCAAAAATTAAGAAAATGGGAAAGGTTATTTTTCAAATGGAAAGGGTCTGAGAATAGAATGGAAACGCAGGAAAAAAAACTTGTAAAAGTACAGTTAAATTGTGATAATATGGGAAGTGAGTATATTCAAAAATTGAGAAAAGGACGATGTTCAAAATAACGGTTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGACGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>306 262 136 107 87 57 45</canonical_bands>
                <polymorphic_bands>306 262 243 87 57 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTACCTGCTCAACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTGAACTTTTTCTGAAATCAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AAAATTACCTGCTCAACAAAAAACACCAATATTTGCGTTCCTCGAGACATTTCCGGTCCTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATCGGAAATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGTTATCTTTTTGTATCCCTCTCCGCCTAGACGGCCTGAAAAGTTGAAAAAAATTGATTTCAGAAAAAGTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAATTACCTGCTCAACAAAAAACACCAATATTTGCGTTCCTCGAGACATTTCCGGTCCTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATYGGAAATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGTTATCTTTTTGTATCCCTCTCCGCCTAGACGGCCTGAAAAGTTGAAAAAAATTGATTTCAGAAAAAGTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12959</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>114632</contig_pos>
        <strand>+</strand>
        <context>ATTCATYGGA[A/T]ATCCATATGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATCGGA</left_flank>
        <right_flank>ATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGTTTGAAATGTTTATAAATTAAAATTTAGACAATTTCAGACATTTTAAGCCAAAGACCACAAAAAATGAACGTTTTTGAAAAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGTTCCTCGAGACATTTCCGGTCCTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATCGGAAATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGTTATCTTTTTGTATCCCTCTCCGCCTAGACGGCCTGAAAAGTTGAAAAAAATTGATTTCAGAAAAAGTTCAAAAATTAAGAAAATGGGAAAGGTTATTTTTCAAATGGAAAGGGTCTGAGAATAGAATGGAAACGCAGGAAAAAAAACTTGTAAAAGTACAGTTAAATTGTGATAATATGGGAAGTGAGTATATTCAAAAATTGAGAAAAGGACGATGTTCAAAATAACGGTTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGACGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCGTCGC</canonical>
            <polymorphic>TTTGTTTGAAATGTTTATAAATTAAAATTTAGACAATTTCAGACATTTTAAGCCAAAGACCACAAAAAATGAACGTTTTTGAAAAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGTTCCTCGAGACATTTCCGGTCCTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATCGGAWATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGTTATCTTTTTGTATCCCTCTCCGCCTAGACGGCCTGAAAAGTTGAAAAAAATTGATTTCAGAAAAAGTTCAAAAATTAAGAAAATGGGAAAGGTTATTTTTCAAATGGAAAGGGTCTGAGAATAGAATGGAAACGCAGGAAAAAAAACTTGTAAAAGTACAGTTAAATTGTGATAATATGGGAAGTGAGTATATTCAAAAATTGAGAAAAGGACGATGTTCAAAATAACGGTTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGACGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCGTCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTACCTGCTCAACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTGAACTTTTTCTGAAATCAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AAAATTACCTGCTCAACAAAAAACACCAATATTTGCGTTCCTCGAGACATTTCCGGTCCTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATCGGAAATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGTTATCTTTTTGTATCCCTCTCCGCCTAGACGGCCTGAAAAGTTGAAAAAAATTGATTTCAGAAAAAGTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAATTACCTGCTCAACAAAAAACACCAATATTTGCGTTCCTCGAGACATTTCCGGTCCTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATCGGAWATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGTTATCTTTTTGTATCCCTCTCCGCCTAGACGGCCTGAAAAGTTGAAAAAAATTGATTTCAGAAAAAGTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12960</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>116486</contig_pos>
        <strand>+</strand>
        <context>AGWTGAGTTA[A/T]TAAGCCAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTAAAAGTTGAACAGATAGTTTAGAGTTTCTGAAAAGCTAGATGAGTTA</left_flank>
        <right_flank>TAAGCCAGTTCAATAAGTTTGAAAAAAAATAAAAGAAAAAAAATAAAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTCAAGAATCGAACAATTCGAAAAAAGTGTCAAAAAAACATTTTTCTGCAAAAAAAAAACAGAAAAAATTCCAAAAAAAAGGAGAAAGTGGGAAAACCTCATTAACTATGTCTCGGAGGTTTTTTTTCTTCTCCCGGCCATTCCCCCCGCTGCTGCCATTTTCTTAGCACATTTTCGTGCTCATTTTCCAACTAAATGATGTCACTTCTGCTTCTGTTCCCCCTGGCCCGTCGGACGGGTGCCTACTAAAAGTTGTAAAGGAAAAAAAAGATTAGGAGGCCGGTGAAACGAAAAGGGGGGTACAAATGTCCAGAGAAAATGTGTAGTTGTGTCTACGGAGGTCCCGTGGAATAAATGAAAACATAATGGAGCAGTTAGCAATGAGAAAAGAGCGGGAGGGGGACAAATAGAAACTTCCTTTAACATGTTTATGTACGAAGATTTTATGTAAAAGTTGAACAGATAGTTTAGAGTTTCTGAAAAGCTAGATGAGTTAATAAGCCAGTTCAATAAGTTTGAAAAAAAATAAAAGAAAAAAAATAAAAACCACACATTTTGAGCTGAAATCCAAAATTTTTGAGCGATTTTAAATAAAGTTATGGCATTTTAAAAATTTTAGAATCCAAAAATTTTGAATCCAAAAATTTCCACTGGTTCAATTTTTTAGAATGGTTCAATTTTTTAGATTTTCGGCTTAAAATGTTCATGTTAAACTCAAAAATAGCAAAAAACTACACATTTTGAACCAAAGACCAAGAACTTTCAGCAATTTTAAAGGAAGTTATAACTTTTTGAAAATTTTAGAATCCAAAAATTTCAAATCATCATAACTTTGTTCAAAATGGTTCAAGGTTTGTGATCTTTAACTTAAAATGTTTCTGGAATATTCGAAAATGTGTCAACATTAATTTCCAAAACGTTTCAAAGCCTTTTTAGGCTTCTAAGCGCCAGCAACGCGGTCTAATCTTGAACATTTTTGTGTAGGCGAATTCTATGT</canonical>
            <polymorphic>AATTTCAAGAATCGAACAATTCGAAAAAAGTGTCAAAAAAACATTTTTCTGCAAAAAAAAAACAGAAAAAATTCCAAAAAAAAGGAGAAAGTGGGAAAACCTCATTAACTATGTCTCGGAGGTTTTTTTTCTTCTCCCGGCCATTCCCCCCGCTGCTGCCATTTTCTTAGCACATTTTCGTGCTCATTTTCCAACTAAATGATGTCACTTCTGCTTCTGTTCCCCCTGGCCCGTCGGACGGGTGCCTACTAAAAGTTGTAAAGGAAAAAAAAGATTAGGAGGCCGGTGAAACGAAAAGGGGGGTACAAATGTCCAGAGAAAATGTGTAGTTGTGTCTACGGAGGTCCCGTGGAATAAATGAAAACATAATGGAGCAGTTAGCAATGAGAAAAGAGCGGGAGGGGGACAAATAGAAACTTCCTTTAACATGTTTATGTACGAAGATTTTATGTAAAAGTTGAACAGATAGTTTAGAGTTTCTGAAAAGCTAGATGAGTTAWTAAGCCAGTTCAATAAGTTTGAAAAAAAATAAAAGAAAAAAAATAAAAACCACACATTTTGAGCTGAAATCCAAAATTTTTGAGCGATTTTAAATAAAGTTATGGCATTTTAAAAATTTTAGAATCCAAAAATTTTGAATCCAAAAATTTCCACTGGTTCAATTTTTTAGAATGGTTCAATTTTTTAGATTTTCGGCTTAAAATGTTCATGTTAAACTCAAAAATAGCAAAAAACTACACATTTTGAACCAAAGACCAAGAACTTTCAGCAATTTTAAAGGAAGTTATAACTTTTTGAAAATTTTAGAATCCAAAAATTTCAAATCATCATAACTTTGTTCAAAATGGTTCAAGGTTTGTGATCTTTAACTTAAAATGTTTCTGGAATATTCGAAAATGTGTCAACATTAATTTCCAAAACGTTTCAAAGCCTTTTTAGGCTTCTAAGCGCCAGCAACGCGGTCTAATCTTGAACATTTTTGTGTAGGCGAATTCTATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>318 105 93 92 91 88 74 63 37 20 14 5</canonical_bands>
                <polymorphic_bands>318 167 105 92 91 88 63 37 20 14 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAAGATTTTATGTAAAAGTTGAA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTAAGCCGAAAATCTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>266</pcr_amplicon_size>
		<canonical_amplicon>CGAAGATTTTATGTAAAAGTTGAACAGATAGTTTAGAGTTTCTGAAAAGCTAGATGAGTTAATAAGCCAGTTCAATAAGTTTGAAAAAAAATAAAAGAAAAAAAATAAAAACCACACATTTTGAGCTGAAATCCAAAATTTTTGAGCGATTTTAAATAAAGTTATGGCATTTTAAAAATTTTAGAATCCAAAAATTTTGAATCCAAAAATTTCCACTGGTTCAATTTTTTAGAATGGTTCAATTTTTTAGATTTTCGGCTTAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CGAAGATTTTATGTAAAAGTTGAACAGATAGTTTAGAGTTTCTGAAAAGCTAGATGAGTTAWTAAGCCAGTTCAATAAGTTTGAAAAAAAATAAAAGAAAAAAAATAAAAACCACACATTTTGAGCTGAAATCCAAAATTTTTGAGCGATTTTAAATAAAGTTATGGCATTTTAAAAATTTTAGAATCCAAAAATTTTGAATCCAAAAATTTCCACTGGTTCAATTTTTTAGAATGGTTCAATTTTTTAGATTTTCGGCTTAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12961</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>116478</contig_pos>
        <strand>+</strand>
        <context>GAAAAGCWAG[A/T]TGAGTTAWTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGATTTTATGTAAAAGTTGAACAGATAGTTTAGAGTTTCTGAAAAGCTAG</left_flank>
        <right_flank>TGAGTTAATAAGCCAGTTCAATAAGTTTGAAAAAAAATAAAAGAAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAGCTAATTTCAAGAATCGAACAATTCGAAAAAAGTGTCAAAAAAACATTTTTCTGCAAAAAAAAAACAGAAAAAATTCCAAAAAAAAGGAGAAAGTGGGAAAACCTCATTAACTATGTCTCGGAGGTTTTTTTTCTTCTCCCGGCCATTCCCCCCGCTGCTGCCATTTTCTTAGCACATTTTCGTGCTCATTTTCCAACTAAATGATGTCACTTCTGCTTCTGTTCCCCCTGGCCCGTCGGACGGGTGCCTACTAAAAGTTGTAAAGGAAAAAAAAGATTAGGAGGCCGGTGAAACGAAAAGGGGGGTACAAATGTCCAGAGAAAATGTGTAGTTGTGTCTACGGAGGTCCCGTGGAATAAATGAAAACATAATGGAGCAGTTAGCAATGAGAAAAGAGCGGGAGGGGGACAAATAGAAACTTCCTTTAACATGTTTATGTACGAAGATTTTATGTAAAAGTTGAACAGATAGTTTAGAGTTTCTGAAAAGCTAGATGAGTTAATAAGCCAGTTCAATAAGTTTGAAAAAAAATAAAAGAAAAAAAATAAAAACCACACATTTTGAGCTGAAATCCAAAATTTTTGAGCGATTTTAAATAAAGTTATGGCATTTTAAAAATTTTAGAATCCAAAAATTTTGAATCCAAAAATTTCCACTGGTTCAATTTTTTAGAATGGTTCAATTTTTTAGATTTTCGGCTTAAAATGTTCATGTTAAACTCAAAAATAGCAAAAAACTACACATTTTGAACCAAAGACCAAGAACTTTCAGCAATTTTAAAGGAAGTTATAACTTTTTGAAAATTTTAGAATCCAAAAATTTCAAATCATCATAACTTTGTTCAAAATGGTTCAAGGTTTGTGATCTTTAACTTAAAATGTTTCTGGAATATTCGAAAATGTGTCAACATTAATTTCCAAAACGTTTCAAAGCCTTTTTAGGCTTCTAAGCGCCAGCAACGCGGTCTAATCTTGAACATTTTTGTGTAGGCGAA</canonical>
            <polymorphic>CAAAAGCTAATTTCAAGAATCGAACAATTCGAAAAAAGTGTCAAAAAAACATTTTTCTGCAAAAAAAAAACAGAAAAAATTCCAAAAAAAAGGAGAAAGTGGGAAAACCTCATTAACTATGTCTCGGAGGTTTTTTTTCTTCTCCCGGCCATTCCCCCCGCTGCTGCCATTTTCTTAGCACATTTTCGTGCTCATTTTCCAACTAAATGATGTCACTTCTGCTTCTGTTCCCCCTGGCCCGTCGGACGGGTGCCTACTAAAAGTTGTAAAGGAAAAAAAAGATTAGGAGGCCGGTGAAACGAAAAGGGGGGTACAAATGTCCAGAGAAAATGTGTAGTTGTGTCTACGGAGGTCCCGTGGAATAAATGAAAACATAATGGAGCAGTTAGCAATGAGAAAAGAGCGGGAGGGGGACAAATAGAAACTTCCTTTAACATGTTTATGTACGAAGATTTTATGTAAAAGTTGAACAGATAGTTTAGAGTTTCTGAAAAGCTAGWTGAGTTAATAAGCCAGTTCAATAAGTTTGAAAAAAAATAAAAGAAAAAAAATAAAAACCACACATTTTGAGCTGAAATCCAAAATTTTTGAGCGATTTTAAATAAAGTTATGGCATTTTAAAAATTTTAGAATCCAAAAATTTTGAATCCAAAAATTTCCACTGGTTCAATTTTTTAGAATGGTTCAATTTTTTAGATTTTCGGCTTAAAATGTTCATGTTAAACTCAAAAATAGCAAAAAACTACACATTTTGAACCAAAGACCAAGAACTTTCAGCAATTTTAAAGGAAGTTATAACTTTTTGAAAATTTTAGAATCCAAAAATTTCAAATCATCATAACTTTGTTCAAAATGGTTCAAGGTTTGTGATCTTTAACTTAAAATGTTTCTGGAATATTCGAAAATGTGTCAACATTAATTTCCAAAACGTTTCAAAGCCTTTTTAGGCTTCTAAGCGCCAGCAACGCGGTCTAATCTTGAACATTTTTGTGTAGGCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAAGATTTTATGTAAAAGTTGAA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTAAGCCGAAAATCTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>266</pcr_amplicon_size>
		<canonical_amplicon>CGAAGATTTTATGTAAAAGTTGAACAGATAGTTTAGAGTTTCTGAAAAGCTAGATGAGTTAATAAGCCAGTTCAATAAGTTTGAAAAAAAATAAAAGAAAAAAAATAAAAACCACACATTTTGAGCTGAAATCCAAAATTTTTGAGCGATTTTAAATAAAGTTATGGCATTTTAAAAATTTTAGAATCCAAAAATTTTGAATCCAAAAATTTCCACTGGTTCAATTTTTTAGAATGGTTCAATTTTTTAGATTTTCGGCTTAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CGAAGATTTTATGTAAAAGTTGAACAGATAGTTTAGAGTTTCTGAAAAGCTAGWTGAGTTAATAAGCCAGTTCAATAAGTTTGAAAAAAAATAAAAGAAAAAAAATAAAAACCACACATTTTGAGCTGAAATCCAAAATTTTTGAGCGATTTTAAATAAAGTTATGGCATTTTAAAAATTTTAGAATCCAAAAATTTTGAATCCAAAAATTTCCACTGGTTCAATTTTTTAGAATGGTTCAATTTTTTAGATTTTCGGCTTAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12962</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>116475</contig_pos>
        <strand>+</strand>
        <context>YCTGAAAAGC[A/T]AGWTGAGTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGAAGATTTTATGTAAAAGTTGAACAGATAGTTTAGAGTTTCTGAAAAGC</left_flank>
        <right_flank>AGATGAGTTAATAAGCCAGTTCAATAAGTTTGAAAAAAAATAAAAGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCAAAAGCTAATTTCAAGAATCGAACAATTCGAAAAAAGTGTCAAAAAAACATTTTTCTGCAAAAAAAAAACAGAAAAAATTCCAAAAAAAAGGAGAAAGTGGGAAAACCTCATTAACTATGTCTCGGAGGTTTTTTTTCTTCTCCCGGCCATTCCCCCCGCTGCTGCCATTTTCTTAGCACATTTTCGTGCTCATTTTCCAACTAAATGATGTCACTTCTGCTTCTGTTCCCCCTGGCCCGTCGGACGGGTGCCTACTAAAAGTTGTAAAGGAAAAAAAAGATTAGGAGGCCGGTGAAACGAAAAGGGGGGTACAAATGTCCAGAGAAAATGTGTAGTTGTGTCTACGGAGGTCCCGTGGAATAAATGAAAACATAATGGAGCAGTTAGCAATGAGAAAAGAGCGGGAGGGGGACAAATAGAAACTTCCTTTAACATGTTTATGTACGAAGATTTTATGTAAAAGTTGAACAGATAGTTTAGAGTTTCTGAAAAGCTAGATGAGTTAATAAGCCAGTTCAATAAGTTTGAAAAAAAATAAAAGAAAAAAAATAAAAACCACACATTTTGAGCTGAAATCCAAAATTTTTGAGCGATTTTAAATAAAGTTATGGCATTTTAAAAATTTTAGAATCCAAAAATTTTGAATCCAAAAATTTCCACTGGTTCAATTTTTTAGAATGGTTCAATTTTTTAGATTTTCGGCTTAAAATGTTCATGTTAAACTCAAAAATAGCAAAAAACTACACATTTTGAACCAAAGACCAAGAACTTTCAGCAATTTTAAAGGAAGTTATAACTTTTTGAAAATTTTAGAATCCAAAAATTTCAAATCATCATAACTTTGTTCAAAATGGTTCAAGGTTTGTGATCTTTAACTTAAAATGTTTCTGGAATATTCGAAAATGTGTCAACATTAATTTCCAAAACGTTTCAAAGCCTTTTTAGGCTTCTAAGCGCCAGCAACGCGGTCTAATCTTGAACATTTTTGTGTAGGC</canonical>
            <polymorphic>AACCAAAAGCTAATTTCAAGAATCGAACAATTCGAAAAAAGTGTCAAAAAAACATTTTTCTGCAAAAAAAAAACAGAAAAAATTCCAAAAAAAAGGAGAAAGTGGGAAAACCTCATTAACTATGTCTCGGAGGTTTTTTTTCTTCTCCCGGCCATTCCCCCCGCTGCTGCCATTTTCTTAGCACATTTTCGTGCTCATTTTCCAACTAAATGATGTCACTTCTGCTTCTGTTCCCCCTGGCCCGTCGGACGGGTGCCTACTAAAAGTTGTAAAGGAAAAAAAAGATTAGGAGGCCGGTGAAACGAAAAGGGGGGTACAAATGTCCAGAGAAAATGTGTAGTTGTGTCTACGGAGGTCCCGTGGAATAAATGAAAACATAATGGAGCAGTTAGCAATGAGAAAAGAGCGGGAGGGGGACAAATAGAAACTTCCTTTAACATGTTTATGTACGAAGATTTTATGTAAAAGTTGAACAGATAGTTTAGAGTTTCTGAAAAGCWAGATGAGTTAATAAGCCAGTTCAATAAGTTTGAAAAAAAATAAAAGAAAAAAAATAAAAACCACACATTTTGAGCTGAAATCCAAAATTTTTGAGCGATTTTAAATAAAGTTATGGCATTTTAAAAATTTTAGAATCCAAAAATTTTGAATCCAAAAATTTCCACTGGTTCAATTTTTTAGAATGGTTCAATTTTTTAGATTTTCGGCTTAAAATGTTCATGTTAAACTCAAAAATAGCAAAAAACTACACATTTTGAACCAAAGACCAAGAACTTTCAGCAATTTTAAAGGAAGTTATAACTTTTTGAAAATTTTAGAATCCAAAAATTTCAAATCATCATAACTTTGTTCAAAATGGTTCAAGGTTTGTGATCTTTAACTTAAAATGTTTCTGGAATATTCGAAAATGTGTCAACATTAATTTCCAAAACGTTTCAAAGCCTTTTTAGGCTTCTAAGCGCCAGCAACGCGGTCTAATCTTGAACATTTTTGTGTAGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>489 426 76 9</canonical_bands>
                <polymorphic_bands>565 426 9</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>234 205 142 133 89 59 53 49 17 10 9</canonical_bands>
                <polymorphic_bands>234 222 142 133 89 59 53 49 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGTTTATGTACGAAGATTTTATG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTAAGCCGAAAATCTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>278</pcr_amplicon_size>
		<canonical_amplicon>CATGTTTATGTACGAAGATTTTATGTAAAAGTTGAACAGATAGTTTAGAGTTTCTGAAAAGCTAGATGAGTTAATAAGCCAGTTCAATAAGTTTGAAAAAAAATAAAAGAAAAAAAATAAAAACCACACATTTTGAGCTGAAATCCAAAATTTTTGAGCGATTTTAAATAAAGTTATGGCATTTTAAAAATTTTAGAATCCAAAAATTTTGAATCCAAAAATTTCCACTGGTTCAATTTTTTAGAATGGTTCAATTTTTTAGATTTTCGGCTTAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CATGTTTATGTACGAAGATTTTATGTAAAAGTTGAACAGATAGTTTAGAGTTTCTGAAAAGCWAGATGAGTTAATAAGCCAGTTCAATAAGTTTGAAAAAAAATAAAAGAAAAAAAATAAAAACCACACATTTTGAGCTGAAATCCAAAATTTTTGAGCGATTTTAAATAAAGTTATGGCATTTTAAAAATTTTAGAATCCAAAAATTTTGAATCCAAAAATTTCCACTGGTTCAATTTTTTAGAATGGTTCAATTTTTTAGATTTTCGGCTTAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12963</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>116465</contig_pos>
        <strand>+</strand>
        <context>GTTTAGAGTT[C/T]CTGAAAAGCW</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTTTATGTACGAAGATTTTATGTAAAAGTTGAACAGATAGTTTAGAGTT</left_flank>
        <right_flank>CTGAAAAGCTAGATGAGTTAATAAGCCAGTTCAATAAGTTTGAAAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAATTCGAACCAAAAGCTAATTTCAAGAATCGAACAATTCGAAAAAAGTGTCAAAAAAACATTTTTCTGCAAAAAAAAAACAGAAAAAATTCCAAAAAAAAGGAGAAAGTGGGAAAACCTCATTAACTATGTCTCGGAGGTTTTTTTTCTTCTCCCGGCCATTCCCCCCGCTGCTGCCATTTTCTTAGCACATTTTCGTGCTCATTTTCCAACTAAATGATGTCACTTCTGCTTCTGTTCCCCCTGGCCCGTCGGACGGGTGCCTACTAAAAGTTGTAAAGGAAAAAAAAGATTAGGAGGCCGGTGAAACGAAAAGGGGGGTACAAATGTCCAGAGAAAATGTGTAGTTGTGTCTACGGAGGTCCCGTGGAATAAATGAAAACATAATGGAGCAGTTAGCAATGAGAAAAGAGCGGGAGGGGGACAAATAGAAACTTCCTTTAACATGTTTATGTACGAAGATTTTATGTAAAAGTTGAACAGATAGTTTAGAGTTTCTGAAAAGCTAGATGAGTTAATAAGCCAGTTCAATAAGTTTGAAAAAAAATAAAAGAAAAAAAATAAAAACCACACATTTTGAGCTGAAATCCAAAATTTTTGAGCGATTTTAAATAAAGTTATGGCATTTTAAAAATTTTAGAATCCAAAAATTTTGAATCCAAAAATTTCCACTGGTTCAATTTTTTAGAATGGTTCAATTTTTTAGATTTTCGGCTTAAAATGTTCATGTTAAACTCAAAAATAGCAAAAAACTACACATTTTGAACCAAAGACCAAGAACTTTCAGCAATTTTAAAGGAAGTTATAACTTTTTGAAAATTTTAGAATCCAAAAATTTCAAATCATCATAACTTTGTTCAAAATGGTTCAAGGTTTGTGATCTTTAACTTAAAATGTTTCTGGAATATTCGAAAATGTGTCAACATTAATTTCCAAAACGTTTCAAAGCCTTTTTAGGCTTCTAAGCGCCAGCAACGCGGTCTAATCTTGAACATTT</canonical>
            <polymorphic>GAAAAATTCGAACCAAAAGCTAATTTCAAGAATCGAACAATTCGAAAAAAGTGTCAAAAAAACATTTTTCTGCAAAAAAAAAACAGAAAAAATTCCAAAAAAAAGGAGAAAGTGGGAAAACCTCATTAACTATGTCTCGGAGGTTTTTTTTCTTCTCCCGGCCATTCCCCCCGCTGCTGCCATTTTCTTAGCACATTTTCGTGCTCATTTTCCAACTAAATGATGTCACTTCTGCTTCTGTTCCCCCTGGCCCGTCGGACGGGTGCCTACTAAAAGTTGTAAAGGAAAAAAAAGATTAGGAGGCCGGTGAAACGAAAAGGGGGGTACAAATGTCCAGAGAAAATGTGTAGTTGTGTCTACGGAGGTCCCGTGGAATAAATGAAAACATAATGGAGCAGTTAGCAATGAGAAAAGAGCGGGAGGGGGACAAATAGAAACTTCCTTTAACATGTTTATGTACGAAGATTTTATGTAAAAGTTGAACAGATAGTTTAGAGTTYCTGAAAAGCTAGATGAGTTAATAAGCCAGTTCAATAAGTTTGAAAAAAAATAAAAGAAAAAAAATAAAAACCACACATTTTGAGCTGAAATCCAAAATTTTTGAGCGATTTTAAATAAAGTTATGGCATTTTAAAAATTTTAGAATCCAAAAATTTTGAATCCAAAAATTTCCACTGGTTCAATTTTTTAGAATGGTTCAATTTTTTAGATTTTCGGCTTAAAATGTTCATGTTAAACTCAAAAATAGCAAAAAACTACACATTTTGAACCAAAGACCAAGAACTTTCAGCAATTTTAAAGGAAGTTATAACTTTTTGAAAATTTTAGAATCCAAAAATTTCAAATCATCATAACTTTGTTCAAAATGGTTCAAGGTTTGTGATCTTTAACTTAAAATGTTTCTGGAATATTCGAAAATGTGTCAACATTAATTTCCAAAACGTTTCAAAGCCTTTTTAGGCTTCTAAGCGCCAGCAACGCGGTCTAATCTTGAACATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>498 245 139 118</canonical_bands>
                <polymorphic_bands>743 139 118</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAACATGTTTATGTACGAAGATTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTAAGCCGAAAATCTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>283</pcr_amplicon_size>
		<canonical_amplicon>TTTAACATGTTTATGTACGAAGATTTTATGTAAAAGTTGAACAGATAGTTTAGAGTTTCTGAAAAGCTAGATGAGTTAATAAGCCAGTTCAATAAGTTTGAAAAAAAATAAAAGAAAAAAAATAAAAACCACACATTTTGAGCTGAAATCCAAAATTTTTGAGCGATTTTAAATAAAGTTATGGCATTTTAAAAATTTTAGAATCCAAAAATTTTGAATCCAAAAATTTCCACTGGTTCAATTTTTTAGAATGGTTCAATTTTTTAGATTTTCGGCTTAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTAACATGTTTATGTACGAAGATTTTATGTAAAAGTTGAACAGATAGTTTAGAGTTYCTGAAAAGCTAGATGAGTTAATAAGCCAGTTCAATAAGTTTGAAAAAAAATAAAAGAAAAAAAATAAAAACCACACATTTTGAGCTGAAATCCAAAATTTTTGAGCGATTTTAAATAAAGTTATGGCATTTTAAAAATTTTAGAATCCAAAAATTTTGAATCCAAAAATTTCCACTGGTTCAATTTTTTAGAATGGTTCAATTTTTTAGATTTTCGGCTTAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12964</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>116405</contig_pos>
        <strand>+</strand>
        <context>AATAGAAACT[G/T]CCTTTAACAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGGAGCAGTTAGCAATGAGAAAAGAGCGGGAGGGGGACAAATAGAAACT</left_flank>
        <right_flank>CCTTTAACATGTTTATGTACGAAGATTTTATGTAAAAGTTGAACAGATAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGTAAAATTCAAATTTTTAGAGAAGCTCAATTTTTTCAATTTTTAGAAGAAAATTCAGGAAAAATTCGAACCAAAAGCTAATTTCAAGAATCGAACAATTCGAAAAAAGTGTCAAAAAAACATTTTTCTGCAAAAAAAAAACAGAAAAAATTCCAAAAAAAAGGAGAAAGTGGGAAAACCTCATTAACTATGTCTCGGAGGTTTTTTTTCTTCTCCCGGCCATTCCCCCCGCTGCTGCCATTTTCTTAGCACATTTTCGTGCTCATTTTCCAACTAAATGATGTCACTTCTGCTTCTGTTCCCCCTGGCCCGTCGGACGGGTGCCTACTAAAAGTTGTAAAGGAAAAAAAAGATTAGGAGGCCGGTGAAACGAAAAGGGGGGTACAAATGTCCAGAGAAAATGTGTAGTTGTGTCTACGGAGGTCCCGTGGAATAAATGAAAACATAATGGAGCAGTTAGCAATGAGAAAAGAGCGGGAGGGGGACAAATAGAAACTTCCTTTAACATGTTTATGTACGAAGATTTTATGTAAAAGTTGAACAGATAGTTTAGAGTTTCTGAAAAGCTAGATGAGTTAATAAGCCAGTTCAATAAGTTTGAAAAAAAATAAAAGAAAAAAAATAAAAACCACACATTTTGAGCTGAAATCCAAAATTTTTGAGCGATTTTAAATAAAGTTATGGCATTTTAAAAATTTTAGAATCCAAAAATTTTGAATCCAAAAATTTCCACTGGTTCAATTTTTTAGAATGGTTCAATTTTTTAGATTTTCGGCTTAAAATGTTCATGTTAAACTCAAAAATAGCAAAAAACTACACATTTTGAACCAAAGACCAAGAACTTTCAGCAATTTTAAAGGAAGTTATAACTTTTTGAAAATTTTAGAATCCAAAAATTTCAAATCATCATAACTTTGTTCAAAATGGTTCAAGGTTTGTGATCTTTAACTTAAAATGTTTCTGGAATATTCGAAAATGTGTCAACATTAATTTCCAAA</canonical>
            <polymorphic>TTTGTAAAATTCAAATTTTTAGAGAAGCTCAATTTTTTCAATTTTTAGAAGAAAATTCAGGAAAAATTCGAACCAAAAGCTAATTTCAAGAATCGAACAATTCGAAAAAAGTGTCAAAAAAACATTTTTCTGCAAAAAAAAAACAGAAAAAATTCCAAAAAAAAGGAGAAAGTGGGAAAACCTCATTAACTATGTCTCGGAGGTTTTTTTTCTTCTCCCGGCCATTCCCCCCGCTGCTGCCATTTTCTTAGCACATTTTCGTGCTCATTTTCCAACTAAATGATGTCACTTCTGCTTCTGTTCCCCCTGGCCCGTCGGACGGGTGCCTACTAAAAGTTGTAAAGGAAAAAAAAGATTAGGAGGCCGGTGAAACGAAAAGGGGGGTACAAATGTCCAGAGAAAATGTGTAGTTGTGTCTACGGAGGTCCCGTGGAATAAATGAAAACATAATGGAGCAGTTAGCAATGAGAAAAGAGCGGGAGGGGGACAAATAGAAACTKCCTTTAACATGTTTATGTACGAAGATTTTATGTAAAAGTTGAACAGATAGTTTAGAGTTTCTGAAAAGCTAGATGAGTTAATAAGCCAGTTCAATAAGTTTGAAAAAAAATAAAAGAAAAAAAATAAAAACCACACATTTTGAGCTGAAATCCAAAATTTTTGAGCGATTTTAAATAAAGTTATGGCATTTTAAAAATTTTAGAATCCAAAAATTTTGAATCCAAAAATTTCCACTGGTTCAATTTTTTAGAATGGTTCAATTTTTTAGATTTTCGGCTTAAAATGTTCATGTTAAACTCAAAAATAGCAAAAAACTACACATTTTGAACCAAAGACCAAGAACTTTCAGCAATTTTAAAGGAAGTTATAACTTTTTGAAAATTTTAGAATCCAAAAATTTCAAATCATCATAACTTTGTTCAAAATGGTTCAAGGTTTGTGATCTTTAACTTAAAATGTTTCTGGAATATTCGAAAATGTGTCAACATTAATTTCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGGAGCAGTTAGCAATGAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTAAGCCGAAAATCTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>336</pcr_amplicon_size>
		<canonical_amplicon>ATGGAGCAGTTAGCAATGAGAAAAGAGCGGGAGGGGGACAAATAGAAACTTCCTTTAACATGTTTATGTACGAAGATTTTATGTAAAAGTTGAACAGATAGTTTAGAGTTTCTGAAAAGCTAGATGAGTTAATAAGCCAGTTCAATAAGTTTGAAAAAAAATAAAAGAAAAAAAATAAAAACCACACATTTTGAGCTGAAATCCAAAATTTTTGAGCGATTTTAAATAAAGTTATGGCATTTTAAAAATTTTAGAATCCAAAAATTTTGAATCCAAAAATTTCCACTGGTTCAATTTTTTAGAATGGTTCAATTTTTTAGATTTTCGGCTTAAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATGGAGCAGTTAGCAATGAGAAAAGAGCGGGAGGGGGACAAATAGAAACTKCCTTTAACATGTTTATGTACGAAGATTTTATGTAAAAGTTGAACAGATAGTTTAGAGTTTCTGAAAAGCTAGATGAGTTAATAAGCCAGTTCAATAAGTTTGAAAAAAAATAAAAGAAAAAAAATAAAAACCACACATTTTGAGCTGAAATCCAAAATTTTTGAGCGATTTTAAATAAAGTTATGGCATTTTAAAAATTTTAGAATCCAAAAATTTTGAATCCAAAAATTTCCACTGGTTCAATTTTTTAGAATGGTTCAATTTTTTAGATTTTCGGCTTAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12965</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>116387</contig_pos>
        <strand>+</strand>
        <context>AAGAGCGGGA[G/T]GGGGACAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGAATAAATGAAAACATAATGGAGCAGTTAGCAATGAGAAAAGAGCGGGA</left_flank>
        <right_flank>GGGGACAAATAGAAACTTCCTTTAACATGTTTATGTACGAAGATTTTATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAATTTATCATGAAATTTTGTAAAATTCAAATTTTTAGAGAAGCTCAATTTTTTCAATTTTTAGAAGAAAATTCAGGAAAAATTCGAACCAAAAGCTAATTTCAAGAATCGAACAATTCGAAAAAAGTGTCAAAAAAACATTTTTCTGCAAAAAAAAAACAGAAAAAATTCCAAAAAAAAGGAGAAAGTGGGAAAACCTCATTAACTATGTCTCGGAGGTTTTTTTTCTTCTCCCGGCCATTCCCCCCGCTGCTGCCATTTTCTTAGCACATTTTCGTGCTCATTTTCCAACTAAATGATGTCACTTCTGCTTCTGTTCCCCCTGGCCCGTCGGACGGGTGCCTACTAAAAGTTGTAAAGGAAAAAAAAGATTAGGAGGCCGGTGAAACGAAAAGGGGGGTACAAATGTCCAGAGAAAATGTGTAGTTGTGTCTACGGAGGTCCCGTGGAATAAATGAAAACATAATGGAGCAGTTAGCAATGAGAAAAGAGCGGGAGGGGGACAAATAGAAACTTCCTTTAACATGTTTATGTACGAAGATTTTATGTAAAAGTTGAACAGATAGTTTAGAGTTTCTGAAAAGCTAGATGAGTTAATAAGCCAGTTCAATAAGTTTGAAAAAAAATAAAAGAAAAAAAATAAAAACCACACATTTTGAGCTGAAATCCAAAATTTTTGAGCGATTTTAAATAAAGTTATGGCATTTTAAAAATTTTAGAATCCAAAAATTTTGAATCCAAAAATTTCCACTGGTTCAATTTTTTAGAATGGTTCAATTTTTTAGATTTTCGGCTTAAAATGTTCATGTTAAACTCAAAAATAGCAAAAAACTACACATTTTGAACCAAAGACCAAGAACTTTCAGCAATTTTAAAGGAAGTTATAACTTTTTGAAAATTTTAGAATCCAAAAATTTCAAATCATCATAACTTTGTTCAAAATGGTTCAAGGTTTGTGATCTTTAACTTAAAATGTTTCTGGAATATTCGAAAATGTG</canonical>
            <polymorphic>GAGAATTTATCATGAAATTTTGTAAAATTCAAATTTTTAGAGAAGCTCAATTTTTTCAATTTTTAGAAGAAAATTCAGGAAAAATTCGAACCAAAAGCTAATTTCAAGAATCGAACAATTCGAAAAAAGTGTCAAAAAAACATTTTTCTGCAAAAAAAAAACAGAAAAAATTCCAAAAAAAAGGAGAAAGTGGGAAAACCTCATTAACTATGTCTCGGAGGTTTTTTTTCTTCTCCCGGCCATTCCCCCCGCTGCTGCCATTTTCTTAGCACATTTTCGTGCTCATTTTCCAACTAAATGATGTCACTTCTGCTTCTGTTCCCCCTGGCCCGTCGGACGGGTGCCTACTAAAAGTTGTAAAGGAAAAAAAAGATTAGGAGGCCGGTGAAACGAAAAGGGGGGTACAAATGTCCAGAGAAAATGTGTAGTTGTGTCTACGGAGGTCCCGTGGAATAAATGAAAACATAATGGAGCAGTTAGCAATGAGAAAAGAGCGGGAKGGGGACAAATAGAAACTTCCTTTAACATGTTTATGTACGAAGATTTTATGTAAAAGTTGAACAGATAGTTTAGAGTTTCTGAAAAGCTAGATGAGTTAATAAGCCAGTTCAATAAGTTTGAAAAAAAATAAAAGAAAAAAAATAAAAACCACACATTTTGAGCTGAAATCCAAAATTTTTGAGCGATTTTAAATAAAGTTATGGCATTTTAAAAATTTTAGAATCCAAAAATTTTGAATCCAAAAATTTCCACTGGTTCAATTTTTTAGAATGGTTCAATTTTTTAGATTTTCGGCTTAAAATGTTCATGTTAAACTCAAAAATAGCAAAAAACTACACATTTTGAACCAAAGACCAAGAACTTTCAGCAATTTTAAAGGAAGTTATAACTTTTTGAAAATTTTAGAATCCAAAAATTTCAAATCATCATAACTTTGTTCAAAATGGTTCAAGGTTTGTGATCTTTAACTTAAAATGTTTCTGGAATATTCGAAAATGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTGGAATAAATGAAAACATAAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTAAGCCGAAAATCTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>357</pcr_amplicon_size>
		<canonical_amplicon>CGTGGAATAAATGAAAACATAATGGAGCAGTTAGCAATGAGAAAAGAGCGGGAGGGGGACAAATAGAAACTTCCTTTAACATGTTTATGTACGAAGATTTTATGTAAAAGTTGAACAGATAGTTTAGAGTTTCTGAAAAGCTAGATGAGTTAATAAGCCAGTTCAATAAGTTTGAAAAAAAATAAAAGAAAAAAAATAAAAACCACACATTTTGAGCTGAAATCCAAAATTTTTGAGCGATTTTAAATAAAGTTATGGCATTTTAAAAATTTTAGAATCCAAAAATTTTGAATCCAAAAATTTCCACTGGTTCAATTTTTTAGAATGGTTCAATTTTTTAGATTTTCGGCTTAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CGTGGAATAAATGAAAACATAATGGAGCAGTTAGCAATGAGAAAAGAGCGGGAKGGGGACAAATAGAAACTTCCTTTAACATGTTTATGTACGAAGATTTTATGTAAAAGTTGAACAGATAGTTTAGAGTTTCTGAAAAGCTAGATGAGTTAATAAGCCAGTTCAATAAGTTTGAAAAAAAATAAAAGAAAAAAAATAAAAACCACACATTTTGAGCTGAAATCCAAAATTTTTGAGCGATTTTAAATAAAGTTATGGCATTTTAAAAATTTTAGAATCCAAAAATTTTGAATCCAAAAATTTCCACTGGTTCAATTTTTTAGAATGGTTCAATTTTTTAGATTTTCGGCTTAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12966</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>207100</contig_pos>
        <strand>+</strand>
        <context>TTAAATGAGT[A/C]TAAAACTAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGAAATCGAAAGAATTGTTTTTCAAAAAGAAAAGGAATATTTAAATGAGT</left_flank>
        <right_flank>TAAAACTAATAGAAGTCAAGTATGAGCTCAATTATTTCGGCTGTTTTGCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAAAAAAAAATTCAAAAAAAATTTTGAAATTTATTTACTGAATTTTTTTTAAAGGTTTTTTTAAGCGCATTTCCAAGAAATTCGATATTTTCAAACTTACCACATCCTCCACACTCCCACTGGGACCACCGTTATCTTCTCGATCCTTCATGATAAGCTCCGCCTCCTCTTCCCCAACGATTTCTCCAATTTCCAAACTTCTCACAATTTGATTTCCCTCTGTTAGCTCTTGTATATAACTGGCCAGACCAATTTGTATTTCCTGATCGAATCCAGTGATTCGCTCCACAAACACCTTCTTTTTATCGCTTTGAATTGCGCAGCCGAGAAGGAGAAGTAGAAGTTTTTTGAGCTCTTCTTGGAAGCTTTCTGGAAAAGATAGGGTTTTTTTGAAAGAAACAAATGGAAAGATCAGAAAAATTAAATTAGAAAAATTAGAAATTCGCGGGAAATCGAAAGAATTGTTTTTCAAAAAGAAAAGGAATATTTAAATGAGTCTAAAACTAATAGAAGTCAAGTATGAGCTCAATTATTTCGGCTGTTTTGCAAGATATCAAAATTAAGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGGAACCTAGATAAATCGGCTAGTTCCGAATGTTCAAAATTCATGTACCAAGAACACAAAAGCGGACAAAAAGACAGATGTTTGGAATTATGGAACCGCGAGATTCGAAATATATGGAACAGATGTTGAAAATTCTGAAAAAAAAAGACCTAAACATGTTATTCTTAAAAATCTAGATACATTCAATTTTTTGGAACTTTTTGCTACTAAATTTTCAATAAATTTTATATAGATCGATCCATTTTAGAACAAGGAGTCTAACTGTATAATTTTCATCGAATTTGGACAAAAACTAAAAAAAAATACAACAAAATTTCTCCGTTTTTGGTACTGCCCAGCAGTAGTGATTTTGAATTTTGGTACT</canonical>
            <polymorphic>TCGAAAAAAAAATTCAAAAAAAATTTTGAAATTTATTTACTGAATTTTTTTTAAAGGTTTTTTTAAGCGCATTTCCAAGAAATTCGATATTTTCAAACTTACCACATCCTCCACACTCCCACTGGGACCACCGTTATCTTCTCGATCCTTCATGATAAGCTCCGCCTCCTCTTCCCCAACGATTTCTCCAATTTCCAAACTTCTCACAATTTGATTTCCCTCTGTTAGCTCTTGTATATAACTGGCCAGACCAATTTGTATTTCCTGATCGAATCCAGTGATTCGCTCCACAAACACCTTCTTTTTATCGCTTTGAATTGCGCAGCCGAGAAGGAGAAGTAGAAGTTTTTTGAGCTCTTCTTGGAAGCTTTCTGGAAAAGATAGGGTTTTTTTGAAAGAAACAAATGGAAAGATCAGAAAAATTAAATTAGAAAAATTAGAAATTCGCGGGAAATCGAAAGAATTGTTTTTCAAAAAGAAAAGGAATATTTAAATGAGTMTAAAACTAATAGAAGTCAAGTATGAGCTCAATTATTTCGGCTGTTTTGCAAGATATCAAAATTAAGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGGAACCTAGATAAATCGGCTAGTTCCGAATGTTCAAAATTCATGTACCAAGAACACAAAAGCGGACAAAAAGACAGATGTTTGGAATTATGGAACCGCGAGATTCGAAATATATGGAACAGATGTTGAAAATTCTGAAAAAAAAAGACCTAAACATGTTATTCTTAAAAATCTAGATACATTCAATTTTTTGGAACTTTTTGCTACTAAATTTTCAATAAATTTTATATAGATCGATCCATTTTAGAACAAGGAGTCTAACTGTATAATTTTCATCGAATTTGGACAAAAACTAAAAAAAAATACAACAAAATTTCTCCGTTTTTGGTACTGCCCAGCAGTAGTGATTTTGAATTTTGGTACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>271 242 216 152 110 9</canonical_bands>
                <polymorphic_bands>458 271 152 110 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGGAAAGATCAGAAAAATTAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTGGTACATGAATTTTGAACA</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>AATGGAAAGATCAGAAAAATTAAATTAGAAAAATTAGAAATTCGCGGGAAATCGAAAGAATTGTTTTTCAAAAAGAAAAGGAATATTTAAATGAGTCTAAAACTAATAGAAGTCAAGTATGAGCTCAATTATTTCGGCTGTTTTGCAAGATATCAAAATTAAGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGGAACCTAGATAAATCGGCTAGTTCCGAATGTTCAAAATTCATGTACCAAG</canonical_amplicon>
		<polymorphic_amplicon>AATGGAAAGATCAGAAAAATTAAATTAGAAAAATTAGAAATTCGCGGGAAATCGAAAGAATTGTTTTTCAAAAAGAAAAGGAATATTTAAATGAGTMTAAAACTAATAGAAGTCAAGTATGAGCTCAATTATTTCGGCTGTTTTGCAAGATATCAAAATTAAGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGGAACCTAGATAAATCGGCTAGTTCCGAATGTTCAAAATTCATGTACCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12968</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>206965</contig_pos>
        <strand>+</strand>
        <context>CTCTTCTTGG[A/G]AGCTTTCTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATTGCGCAGCCGAGAAGGAGAAGTAGAAGTTTTTTGAGCTCTTCTTGG</left_flank>
        <right_flank>AGCTTTCTGGAAAAGATAGGGTTTTTTTGAAAGAAACAAATGGAAAGATC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAAATTTTTTTTCAGAAATTATTTTTTTAAAGCTTACTCAGATAGCTGGAATCTTTCTGTTTTATGCAATGATCTCCATTTGAACTTGTAGTTGTGGTACTTTCCAAATCGTCAGAATCCTGGAAAAAAAATTTCGAAAAAAAAATTCAAAAAAAATTTTGAAATTTATTTACTGAATTTTTTTTAAAGGTTTTTTTAAGCGCATTTCCAAGAAATTCGATATTTTCAAACTTACCACATCCTCCACACTCCCACTGGGACCACCGTTATCTTCTCGATCCTTCATGATAAGCTCCGCCTCCTCTTCCCCAACGATTTCTCCAATTTCCAAACTTCTCACAATTTGATTTCCCTCTGTTAGCTCTTGTATATAACTGGCCAGACCAATTTGTATTTCCTGATCGAATCCAGTGATTCGCTCCACAAACACCTTCTTTTTATCGCTTTGAATTGCGCAGCCGAGAAGGAGAAGTAGAAGTTTTTTGAGCTCTTCTTGGAAGCTTTCTGGAAAAGATAGGGTTTTTTTGAAAGAAACAAATGGAAAGATCAGAAAAATTAAATTAGAAAAATTAGAAATTCGCGGGAAATCGAAAGAATTGTTTTTCAAAAAGAAAAGGAATATTTAAATGAGTCTAAAACTAATAGAAGTCAAGTATGAGCTCAATTATTTCGGCTGTTTTGCAAGATATCAAAATTAAGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGGAACCTAGATAAATCGGCTAGTTCCGAATGTTCAAAATTCATGTACCAAGAACACAAAAGCGGACAAAAAGACAGATGTTTGGAATTATGGAACCGCGAGATTCGAAATATATGGAACAGATGTTGAAAATTCTGAAAAAAAAAGACCTAAACATGTTATTCTTAAAAATCTAGATACATTCAATTTTTTGGAACTTTTTGCTACTAAATTTTCAATAAATTTTATA</canonical>
            <polymorphic>AGAAAATTTTTTTTCAGAAATTATTTTTTTAAAGCTTACTCAGATAGCTGGAATCTTTCTGTTTTATGCAATGATCTCCATTTGAACTTGTAGTTGTGGTACTTTCCAAATCGTCAGAATCCTGGAAAAAAAATTTCGAAAAAAAAATTCAAAAAAAATTTTGAAATTTATTTACTGAATTTTTTTTAAAGGTTTTTTTAAGCGCATTTCCAAGAAATTCGATATTTTCAAACTTACCACATCCTCCACACTCCCACTGGGACCACCGTTATCTTCTCGATCCTTCATGATAAGCTCCGCCTCCTCTTCCCCAACGATTTCTCCAATTTCCAAACTTCTCACAATTTGATTTCCCTCTGTTAGCTCTTGTATATAACTGGCCAGACCAATTTGTATTTCCTGATCGAATCCAGTGATTCGCTCCACAAACACCTTCTTTTTATCGCTTTGAATTGCGCAGCCGAGAAGGAGAAGTAGAAGTTTTTTGAGCTCTTCTTGGRAGCTTTCTGGAAAAGATAGGGTTTTTTTGAAAGAAACAAATGGAAAGATCAGAAAAATTAAATTAGAAAAATTAGAAATTCGCGGGAAATCGAAAGAATTGTTTTTCAAAAAGAAAAGGAATATTTAAATGAGTCTAAAACTAATAGAAGTCAAGTATGAGCTCAATTATTTCGGCTGTTTTGCAAGATATCAAAATTAAGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGGAACCTAGATAAATCGGCTAGTTCCGAATGTTCAAAATTCATGTACCAAGAACACAAAAGCGGACAAAAAGACAGATGTTTGGAATTATGGAACCGCGAGATTCGAAATATATGGAACAGATGTTGAAAATTCTGAAAAAAAAAGACCTAAACATGTTATTCTTAAAAATCTAGATACATTCAATTTTTTGGAACTTTTTGCTACTAAATTTTCAATAAATTTTATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 468 32</canonical_bands>
                <polymorphic_bands>968 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAATTTGATTTCCCTCTGTTA</pcr_primer_p1>
		<pcr_primer_p2>CGCGAATTTCTAATTTTTCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACAATTTGATTTCCCTCTGTTAGCTCTTGTATATAACTGGCCAGACCAATTTGTATTTCCTGATCGAATCCAGTGATTCGCTCCACAAACACCTTCTTTTTATCGCTTTGAATTGCGCAGCCGAGAAGGAGAAGTAGAAGTTTTTTGAGCTCTTCTTGGAAGCTTTCTGGAAAAGATAGGGTTTTTTTGAAAGAAACAAATGGAAAGATCAGAAAAATTAAATTAGAAAAATTAGAAATTCGCG</canonical_amplicon>
		<polymorphic_amplicon>ACAATTTGATTTCCCTCTGTTAGCTCTTGTATATAACTGGCCAGACCAATTTGTATTTCCTGATCGAATCCAGTGATTCGCTCCACAAACACCTTCTTTTTATCGCTTTGAATTGCGCAGCCGAGAAGGAGAAGTAGAAGTTTTTTGAGCTCTTCTTGGRAGCTTTCTGGAAAAGATAGGGTTTTTTTGAAAGAAACAAATGGAAAGATCAGAAAAATTAAATTAGAAAAATTAGAAATTCGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12969</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>206859</contig_pos>
        <strand>+</strand>
        <context>GACCAATTTG[A/T]ATTTCCTGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTGATTTCCCTCTGTTAGCTCTTGTATATAACTGGCCAGACCAATTTG</left_flank>
        <right_flank>ATTTCCTGATCGAATCCAGTGATTCGCTCCACAAACACCTTCTTTTTATC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGCGTCCTTAACTGTCTCATTTCATGCTGAACATTTGCTAATTGTAGTGTCAGATGACGTGCTTCAGAAGTTGGCGACGTTGAACGGCTCACTGGAAAGATTTCAGAAAATTTTTTTTCAGAAATTATTTTTTTAAAGCTTACTCAGATAGCTGGAATCTTTCTGTTTTATGCAATGATCTCCATTTGAACTTGTAGTTGTGGTACTTTCCAAATCGTCAGAATCCTGGAAAAAAAATTTCGAAAAAAAAATTCAAAAAAAATTTTGAAATTTATTTACTGAATTTTTTTTAAAGGTTTTTTTAAGCGCATTTCCAAGAAATTCGATATTTTCAAACTTACCACATCCTCCACACTCCCACTGGGACCACCGTTATCTTCTCGATCCTTCATGATAAGCTCCGCCTCCTCTTCCCCAACGATTTCTCCAATTTCCAAACTTCTCACAATTTGATTTCCCTCTGTTAGCTCTTGTATATAACTGGCCAGACCAATTTGTATTTCCTGATCGAATCCAGTGATTCGCTCCACAAACACCTTCTTTTTATCGCTTTGAATTGCGCAGCCGAGAAGGAGAAGTAGAAGTTTTTTGAGCTCTTCTTGGAAGCTTTCTGGAAAAGATAGGGTTTTTTTGAAAGAAACAAATGGAAAGATCAGAAAAATTAAATTAGAAAAATTAGAAATTCGCGGGAAATCGAAAGAATTGTTTTTCAAAAAGAAAAGGAATATTTAAATGAGTCTAAAACTAATAGAAGTCAAGTATGAGCTCAATTATTTCGGCTGTTTTGCAAGATATCAAAATTAAGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGGAACCTAGATAAATCGGCTAGTTCCGAATGTTCAAAATTCATGTACCAAGAACACAAAAGCGGACAAAAAGACAGATGTTTGGAATTATGGAACCGCGAGATTCGAAATATATGGAACAGA</canonical>
            <polymorphic>CCTGCGTCCTTAACTGTCTCATTTCATGCTGAACATTTGCTAATTGTAGTGTCAGATGACGTGCTTCAGAAGTTGGCGACGTTGAACGGCTCACTGGAAAGATTTCAGAAAATTTTTTTTCAGAAATTATTTTTTTAAAGCTTACTCAGATAGCTGGAATCTTTCTGTTTTATGCAATGATCTCCATTTGAACTTGTAGTTGTGGTACTTTCCAAATCGTCAGAATCCTGGAAAAAAAATTTCGAAAAAAAAATTCAAAAAAAATTTTGAAATTTATTTACTGAATTTTTTTTAAAGGTTTTTTTAAGCGCATTTCCAAGAAATTCGATATTTTCAAACTTACCACATCCTCCACACTCCCACTGGGACCACCGTTATCTTCTCGATCCTTCATGATAAGCTCCGCCTCCTCTTCCCCAACGATTTCTCCAATTTCCAAACTTCTCACAATTTGATTTCCCTCTGTTAGCTCTTGTATATAACTGGCCAGACCAATTTGWATTTCCTGATCGAATCCAGTGATTCGCTCCACAAACACCTTCTTTTTATCGCTTTGAATTGCGCAGCCGAGAAGGAGAAGTAGAAGTTTTTTGAGCTCTTCTTGGAAGCTTTCTGGAAAAGATAGGGTTTTTTTGAAAGAAACAAATGGAAAGATCAGAAAAATTAAATTAGAAAAATTAGAAATTCGCGGGAAATCGAAAGAATTGTTTTTCAAAAAGAAAAGGAATATTTAAATGAGTCTAAAACTAATAGAAGTCAAGTATGAGCTCAATTATTTCGGCTGTTTTGCAAGATATCAAAATTAAGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGGAACCTAGATAAATCGGCTAGTTCCGAATGTTCAAAATTCATGTACCAAGAACACAAAAGCGGACAAAAAGACAGATGTTTGGAATTATGGAACCGCGAGATTCGAAATATATGGAACAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGAAATTCGATATTTTCAAAC</pcr_primer_p1>
		<pcr_primer_p2>AATTCAAAGCGATAAAAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAAGAAATTCGATATTTTCAAACTTACCACATCCTCCACACTCCCACTGGGACCACCGTTATCTTCTCGATCCTTCATGATAAGCTCCGCCTCCTCTTCCCCAACGATTTCTCCAATTTCCAAACTTCTCACAATTTGATTTCCCTCTGTTAGCTCTTGTATATAACTGGCCAGACCAATTTGTATTTCCTGATCGAATCCAGTGATTCGCTCCACAAACACCTTCTTTTTATCGCTTTGAATT</canonical_amplicon>
		<polymorphic_amplicon>CAAGAAATTCGATATTTTCAAACTTACCACATCCTCCACACTCCCACTGGGACCACCGTTATCTTCTCGATCCTTCATGATAAGCTCCGCCTCCTCTTCCCCAACGATTTCTCCAATTTCCAAACTTCTCACAATTTGATTTCCCTCTGTTAGCTCTTGTATATAACTGGCCAGACCAATTTGWATTTCCTGATCGAATCCAGTGATTCGCTCCACAAACACCTTCTTTTTATCGCTTTGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12970</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>57101</contig_pos>
        <strand>+</strand>
        <context>TGAATGACCC[A/T]ATGGAGGTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAGAAGTTCGCTGGAAAATAAGGTGGAAAAGCGATATATTGAATGACCC</left_flank>
        <right_flank>ATGGAGGTCGTCTCAACAATATGTATCTCGAAAAAGCACTTGAGAAGAGC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTGTTTTCTGTCACAGTTCTGAAATTATTATTTTTACTAGAGTTGATATAGTTTGGGTGAAAAACTATGTTAGGGTTAGTTTTCAATGCTTACATCCAACTAGTTCAAGTTAACTTTTTAATTAATGAGACATACGAGAAATTTGGTTCAAACTCTCTGTTTGGGAGCACAGGAGCTTTAATGGGTGGACAAGATGGATCGAACGTCTTCTGACGAATCTTTTCTTCTGGAGGCACTGTATCCTCGGGGACTGTACCGCTAGAATAATAGTAACCTTTCCCCTTCACGTCAGATACTCCATTCGATGACGTCGGCTCATCGTCTTCCTTGCCCTCCACTGTCTCCATCCGACATATAGGTCGGTGATCCAATGTGTTCATCATCATTGTTTCAGATCATTTTTGGTCTCATGAATTTGTTGTGGTAGTAATTTGGTAATTATAAATATGAGAAGTTCGCTGGAAAATAAGGTGGAAAAGCGATATATTGAATGACCCAATGGAGGTCGTCTCAACAATATGTATCTCGAAAAAGCACTTGAGAAGAGCAGGCTCTCCGTCCGTTGGAATAGAGGGAGCACAGTATGCTTATGCGAAAACGAAAAGTATCTCCGAAGAAAAAGAGAAAGCGAGAGAGAGCGCGCGCGGCGCCTTCCGCCGTTGGTCATTTTTCTACCGTGCATGCGGAAAGTTTAGGCGGAAAAGCCATGGAAACATTAAGGCATTCTTGGAGTCGCAGGTAATGCTCAGTAGCACAGACAGGTTCGCCTTCGAGCTCTACCGCCACCTTGATTCGCACTGTTTTGAATAGAGGATTTTCGGGTAAAACGTCATTGGCATTGTGAAACGCGAAAACTGATTTGTTGAGAATTTCAATGTTCGAGGAATGGAACCACAATACGATCTTTACATGCCGTTGGTTTTTTTTATATGAGTACAGTGCCAGTAACGCGGGTGTCAACTCTAATTGGATCATAATCATAAATGAGGAATGTATTA</canonical>
            <polymorphic>CTTTGTTTTCTGTCACAGTTCTGAAATTATTATTTTTACTAGAGTTGATATAGTTTGGGTGAAAAACTATGTTAGGGTTAGTTTTCAATGCTTACATCCAACTAGTTCAAGTTAACTTTTTAATTAATGAGACATACGAGAAATTTGGTTCAAACTCTCTGTTTGGGAGCACAGGAGCTTTAATGGGTGGACAAGATGGATCGAACGTCTTCTGACGAATCTTTTCTTCTGGAGGCACTGTATCCTCGGGGACTGTACCGCTAGAATAATAGTAACCTTTCCCCTTCACGTCAGATACTCCATTCGATGACGTCGGCTCATCGTCTTCCTTGCCCTCCACTGTCTCCATCCGACATATAGGTCGGTGATCCAATGTGTTCATCATCATTGTTTCAGATCATTTTTGGTCTCATGAATTTGTTGTGGTAGTAATTTGGTAATTATAAATATGAGAAGTTCGCTGGAAAATAAGGTGGAAAAGCGATATATTGAATGACCCWATGGAGGTCGTCTCAACAATATGTATCTCGAAAAAGCACTTGAGAAGAGCAGGCTCTCCGTCCGTTGGAATAGAGGGAGCACAGTATGCTTATGCGAAAACGAAAAGTATCTCCGAAGAAAAAGAGAAAGCGAGAGAGAGCGCGCGCGGCGCCTTCCGCCGTTGGTCATTTTTCTACCGTGCATGCGGAAAGTTTAGGCGGAAAAGCCATGGAAACATTAAGGCATTCTTGGAGTCGCAGGTAATGCTCAGTAGCACAGACAGGTTCGCCTTCGAGCTCTACCGCCACCTTGATTCGCACTGTTTTGAATAGAGGATTTTCGGGTAAAACGTCATTGGCATTGTGAAACGCGAAAACTGATTTGTTGAGAATTTCAATGTTCGAGGAATGGAACCACAATACGATCTTTACATGCCGTTGGTTTTTTTTATATGAGTACAGTGCCAGTAACGCGGGTGTCAACTCTAATTGGATCATAATCATAAATGAGGAATGTATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCATCATTGTTTCAGATCATTT</pcr_primer_p1>
		<pcr_primer_p2>TTCTCTTTTTCTTCGGAGATACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATCATCATTGTTTCAGATCATTTTTGGTCTCATGAATTTGTTGTGGTAGTAATTTGGTAATTATAAATATGAGAAGTTCGCTGGAAAATAAGGTGGAAAAGCGATATATTGAATGACCCAATGGAGGTCGTCTCAACAATATGTATCTCGAAAAAGCACTTGAGAAGAGCAGGCTCTCCGTCCGTTGGAATAGAGGGAGCACAGTATGCTTATGCGAAAACGAAAAGTATCTCCGAAGAAAAAGAGAA</canonical_amplicon>
		<polymorphic_amplicon>ATCATCATTGTTTCAGATCATTTTTGGTCTCATGAATTTGTTGTGGTAGTAATTTGGTAATTATAAATATGAGAAGTTCGCTGGAAAATAAGGTGGAAAAGCGATATATTGAATGACCCWATGGAGGTCGTCTCAACAATATGTATCTCGAAAAAGCACTTGAGAAGAGCAGGCTCTCCGTCCGTTGGAATAGAGGGAGCACAGTATGCTTATGCGAAAACGAAAAGTATCTCCGAAGAAAAAGAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12971</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>185156</contig_pos>
        <strand>+</strand>
        <context>ATAGAAGGCA[A/G]AGGATAGGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACGGCAAAGGTACTGGAGCCGAAAGAGCTAGACTAACTAATAGAAGGCA</left_flank>
        <right_flank>AGGATAGGATTAGCCATGAGAAGGAATAGAAGAGAAGGATATCTGACTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTTTCTCTTGGCTTCACCAGGAATCTTTCTGCTAGCACTCGTTCAAGTTCATCGCGGCTCAAAGCCATGTTGAAGTCTTCGTCAAAGTCCTGTAATATATTCCGTAATTTAGAACCATTGAATCTTTTGGTAACCTCGAAAACTTTGGCGAAGTATGCGGTTCTTGATTTCTCACTCTTGCTAGATGCCTCGTGGAAGTGCTCTTCATATTCGGCCAAGCTCACTTTGCCATCGTCTGAAACTTAGACTTTGCTAGAAACTCCAACTTTTAAAGCATTACGATTCTTATCGAGAGTGTCGAACTCTTCTTTCTTGGCATCAACATAAGCCAACTCCATATGAAGGAATTCGTCGAAAGTGACAACTTTGTCCTTGTTCTGATCGACACGAAGGAATCGTTGTTCATGATTCTCTTGTTTAGTATGGAATACATTGAAGTCTTCCTCCAACGGCAAAGGTACTGGAGCCGAAAGAGCTAGACTAACTAATAGAAGGCAGAGGATAGGATTAGCCATGAGAAGGAATAGAAGAGAAGGATATCTGACTTTGAGAAGAAGCCTCAGTCCTTTTAAAGGGAACATGCCCCCAAGTTGTAGTAGGCGGAGAGACATGGGGAACGAGTGTATTGACCTGTGTCCTGCGTGTCTTCTCAAACAACTGGTTTTCAGTAGAGAAACGGTGTGTAATGACATGATACTTTTCTCCAGTTTTTGTACTTGTTTTTGAAACAACACTATTTCAAAGGGTAATTATTTTTTTCATTTACACTGAATTGTTTTTTTACGATTTATGTTTTTATTTGGTTGTTTTTGGTTCTGCAGATGGAACTGCAAGATATTTGTGGCTCATTTACTCTGTGTTTCTGACCTGGTCTTGAGTAAGTTTTTTTTTTAATATAACAAGTAGTGATTTTCAAAAGTTTTAATTTTGGGAAAAATATTCAGAAAGTGTTAATATTTCTGTTATATTTGTTGAAAAAACACGTTGCTTCCAAAAAC</canonical>
            <polymorphic>AGTTTTCTCTTGGCTTCACCAGGAATCTTTCTGCTAGCACTCGTTCAAGTTCATCGCGGCTCAAAGCCATGTTGAAGTCTTCGTCAAAGTCCTGTAATATATTCCGTAATTTAGAACCATTGAATCTTTTGGTAACCTCGAAAACTTTGGCGAAGTATGCGGTTCTTGATTTCTCACTCTTGCTAGATGCCTCGTGGAAGTGCTCTTCATATTCGGCCAAGCTCACTTTGCCATCGTCTGAAACTTAGACTTTGCTAGAAACTCCAACTTTTAAAGCATTACGATTCTTATCGAGAGTGTCGAACTCTTCTTTCTTGGCATCAACATAAGCCAACTCCATATGAAGGAATTCGTCGAAAGTGACAACTTTGTCCTTGTTCTGATCGACACGAAGGAATCGTTGTTCATGATTCTCTTGTTTAGTATGGAATACATTGAAGTCTTCCTCCAACGGCAAAGGTACTGGAGCCGAAAGAGCTAGACTAACTAATAGAAGGCARAGGATAGGATTAGCCATGAGAAGGAATAGAAGAGAAGGATATCTGACTTTGAGAAGAAGCCTCAGTCCTTTTAAAGGGAACATGCCCCCAAGTTGTAGTAGGCGGAGAGACATGGGGAACGAGTGTATTGACCTGTGTCCTGCGTGTCTTCTCAAACAACTGGTTTTCAGTAGAGAAACGGTGTGTAATGACATGATACTTTTCTCCAGTTTTTGTACTTGTTTTTGAAACAACACTATTTCAAAGGGTAATTATTTTTTTCATTTACACTGAATTGTTTTTTTACGATTTATGTTTTTATTTGGTTGTTTTTGGTTCTGCAGATGGAACTGCAAGATATTTGTGGCTCATTTACTCTGTGTTTCTGACCTGGTCTTGAGTAAGTTTTTTTTTTAATATAACAAGTAGTGATTTTCAAAAGTTTTAATTTTGGGAAAAATATTCAGAAAGTGTTAATATTTCTGTTATATTTGTTGAAAAAACACGTTGCTTCCAAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCGTTGTTCATGATTCTCTT</pcr_primer_p1>
		<pcr_primer_p2>CAGGACACAGGTCAATACACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATCGTTGTTCATGATTCTCTTGTTTAGTATGGAATACATTGAAGTCTTCCTCCAACGGCAAAGGTACTGGAGCCGAAAGAGCTAGACTAACTAATAGAAGGCAGAGGATAGGATTAGCCATGAGAAGGAATAGAAGAGAAGGATATCTGACTTTGAGAAGAAGCCTCAGTCCTTTTAAAGGGAACATGCCCCCAAGTTGTAGTAGGCGGAGAGACATGGGGAACGAGTGTATTGACCTGTGTCCTG</canonical_amplicon>
		<polymorphic_amplicon>AATCGTTGTTCATGATTCTCTTGTTTAGTATGGAATACATTGAAGTCTTCCTCCAACGGCAAAGGTACTGGAGCCGAAAGAGCTAGACTAACTAATAGAAGGCARAGGATAGGATTAGCCATGAGAAGGAATAGAAGAGAAGGATATCTGACTTTGAGAAGAAGCCTCAGTCCTTTTAAAGGGAACATGCCCCCAAGTTGTAGTAGGCGGAGAGACATGGGGAACGAGTGTATTGACCTGTGTCCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12972</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>185193</contig_pos>
        <strand>+</strand>
        <context>TAGAAGAGAA[G/T]GATATCTGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTAATAGAAGGCAGAGGATAGGATTAGCCATGAGAAGGAATAGAAGAGAA</left_flank>
        <right_flank>GATATCTGACTTTGAGAAGAAGCCTCAGTCCTTTTAAAGGGAACATGCCC</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTCGTTCAAGTTCATCGCGGCTCAAAGCCATGTTGAAGTCTTCGTCAAAGTCCTGTAATATATTCCGTAATTTAGAACCATTGAATCTTTTGGTAACCTCGAAAACTTTGGCGAAGTATGCGGTTCTTGATTTCTCACTCTTGCTAGATGCCTCGTGGAAGTGCTCTTCATATTCGGCCAAGCTCACTTTGCCATCGTCTGAAACTTAGACTTTGCTAGAAACTCCAACTTTTAAAGCATTACGATTCTTATCGAGAGTGTCGAACTCTTCTTTCTTGGCATCAACATAAGCCAACTCCATATGAAGGAATTCGTCGAAAGTGACAACTTTGTCCTTGTTCTGATCGACACGAAGGAATCGTTGTTCATGATTCTCTTGTTTAGTATGGAATACATTGAAGTCTTCCTCCAACGGCAAAGGTACTGGAGCCGAAAGAGCTAGACTAACTAATAGAAGGCAGAGGATAGGATTAGCCATGAGAAGGAATAGAAGAGAAGGATATCTGACTTTGAGAAGAAGCCTCAGTCCTTTTAAAGGGAACATGCCCCCAAGTTGTAGTAGGCGGAGAGACATGGGGAACGAGTGTATTGACCTGTGTCCTGCGTGTCTTCTCAAACAACTGGTTTTCAGTAGAGAAACGGTGTGTAATGACATGATACTTTTCTCCAGTTTTTGTACTTGTTTTTGAAACAACACTATTTCAAAGGGTAATTATTTTTTTCATTTACACTGAATTGTTTTTTTACGATTTATGTTTTTATTTGGTTGTTTTTGGTTCTGCAGATGGAACTGCAAGATATTTGTGGCTCATTTACTCTGTGTTTCTGACCTGGTCTTGAGTAAGTTTTTTTTTTAATATAACAAGTAGTGATTTTCAAAAGTTTTAATTTTGGGAAAAATATTCAGAAAGTGTTAATATTTCTGTTATATTTGTTGAAAAAACACGTTGCTTCCAAAAACTTAACGGTCCATCTTTTGGGAGATTCAAAAGATTCAC</canonical>
            <polymorphic>CACTCGTTCAAGTTCATCGCGGCTCAAAGCCATGTTGAAGTCTTCGTCAAAGTCCTGTAATATATTCCGTAATTTAGAACCATTGAATCTTTTGGTAACCTCGAAAACTTTGGCGAAGTATGCGGTTCTTGATTTCTCACTCTTGCTAGATGCCTCGTGGAAGTGCTCTTCATATTCGGCCAAGCTCACTTTGCCATCGTCTGAAACTTAGACTTTGCTAGAAACTCCAACTTTTAAAGCATTACGATTCTTATCGAGAGTGTCGAACTCTTCTTTCTTGGCATCAACATAAGCCAACTCCATATGAAGGAATTCGTCGAAAGTGACAACTTTGTCCTTGTTCTGATCGACACGAAGGAATCGTTGTTCATGATTCTCTTGTTTAGTATGGAATACATTGAAGTCTTCCTCCAACGGCAAAGGTACTGGAGCCGAAAGAGCTAGACTAACTAATAGAAGGCAGAGGATAGGATTAGCCATGAGAAGGAATAGAAGAGAAKGATATCTGACTTTGAGAAGAAGCCTCAGTCCTTTTAAAGGGAACATGCCCCCAAGTTGTAGTAGGCGGAGAGACATGGGGAACGAGTGTATTGACCTGTGTCCTGCGTGTCTTCTCAAACAACTGGTTTTCAGTAGAGAAACGGTGTGTAATGACATGATACTTTTCTCCAGTTTTTGTACTTGTTTTTGAAACAACACTATTTCAAAGGGTAATTATTTTTTTCATTTACACTGAATTGTTTTTTTACGATTTATGTTTTTATTTGGTTGTTTTTGGTTCTGCAGATGGAACTGCAAGATATTTGTGGCTCATTTACTCTGTGTTTCTGACCTGGTCTTGAGTAAGTTTTTTTTTTAATATAACAAGTAGTGATTTTCAAAAGTTTTAATTTTGGGAAAAATATTCAGAAAGTGTTAATATTTCTGTTATATTTGTTGAAAAAACACGTTGCTTCCAAAAACTTAACGGTCCATCTTTTGGGAGATTCAAAAGATTCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCCGAAAGAGCTAGACTAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAAACTGGAGAAAAGTATCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGCCGAAAGAGCTAGACTAACTAATAGAAGGCAGAGGATAGGATTAGCCATGAGAAGGAATAGAAGAGAAGGATATCTGACTTTGAGAAGAAGCCTCAGTCCTTTTAAAGGGAACATGCCCCCAAGTTGTAGTAGGCGGAGAGACATGGGGAACGAGTGTATTGACCTGTGTCCTGCGTGTCTTCTCAAACAACTGGTTTTCAGTAGAGAAACGGTGTGTAATGACATGATACTTTTCTCCAGTTTTTG</canonical_amplicon>
		<polymorphic_amplicon>GAGCCGAAAGAGCTAGACTAACTAATAGAAGGCAGAGGATAGGATTAGCCATGAGAAGGAATAGAAGAGAAKGATATCTGACTTTGAGAAGAAGCCTCAGTCCTTTTAAAGGGAACATGCCCCCAAGTTGTAGTAGGCGGAGAGACATGGGGAACGAGTGTATTGACCTGTGTCCTGCGTGTCTTCTCAAACAACTGGTTTTCAGTAGAGAAACGGTGTGTAATGACATGATACTTTTCTCCAGTTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12973</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>185412</contig_pos>
        <strand>+</strand>
        <context>GGGTAATTAT[G/T]TTTTTCATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCAGTTTTTGTACTTGTTTTTGAAACAACACTATTTCAAAGGGTAATTAT</left_flank>
        <right_flank>TTTTTCATTTACACTGAATTGTTTTTTTACGATTTATGTTTTTATTTGGT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAACTCCAACTTTTAAAGCATTACGATTCTTATCGAGAGTGTCGAACTCTTCTTTCTTGGCATCAACATAAGCCAACTCCATATGAAGGAATTCGTCGAAAGTGACAACTTTGTCCTTGTTCTGATCGACACGAAGGAATCGTTGTTCATGATTCTCTTGTTTAGTATGGAATACATTGAAGTCTTCCTCCAACGGCAAAGGTACTGGAGCCGAAAGAGCTAGACTAACTAATAGAAGGCAGAGGATAGGATTAGCCATGAGAAGGAATAGAAGAGAAGGATATCTGACTTTGAGAAGAAGCCTCAGTCCTTTTAAAGGGAACATGCCCCCAAGTTGTAGTAGGCGGAGAGACATGGGGAACGAGTGTATTGACCTGTGTCCTGCGTGTCTTCTCAAACAACTGGTTTTCAGTAGAGAAACGGTGTGTAATGACATGATACTTTTCTCCAGTTTTTGTACTTGTTTTTGAAACAACACTATTTCAAAGGGTAATTATTTTTTTCATTTACACTGAATTGTTTTTTTACGATTTATGTTTTTATTTGGTTGTTTTTGGTTCTGCAGATGGAACTGCAAGATATTTGTGGCTCATTTACTCTGTGTTTCTGACCTGGTCTTGAGTAAGTTTTTTTTTTAATATAACAAGTAGTGATTTTCAAAAGTTTTAATTTTGGGAAAAATATTCAGAAAGTGTTAATATTTCTGTTATATTTGTTGAAAAAACACGTTGCTTCCAAAAACTTAACGGTCCATCTTTTGGGAGATTCAAAAGATTCACGTGGCTCACAAAAATTTTTGAAATTTCAGTACTTTGATGTGAAAATTAAAACTTTTGAAATTCACTACTTGTTATATGGTGAATTTTGCTAGCCACTGTTTCATAGGTGCCGTTACCAGTTCTTTTTGGATGGCTGTAATAGTGGAAAGTTAGATGGAAGGGTAGACGCTTCCAAGTGGCTTATGTGCTCAGAATGAAGAATATGAAGAATATGAAGAT</canonical>
            <polymorphic>AGAAACTCCAACTTTTAAAGCATTACGATTCTTATCGAGAGTGTCGAACTCTTCTTTCTTGGCATCAACATAAGCCAACTCCATATGAAGGAATTCGTCGAAAGTGACAACTTTGTCCTTGTTCTGATCGACACGAAGGAATCGTTGTTCATGATTCTCTTGTTTAGTATGGAATACATTGAAGTCTTCCTCCAACGGCAAAGGTACTGGAGCCGAAAGAGCTAGACTAACTAATAGAAGGCAGAGGATAGGATTAGCCATGAGAAGGAATAGAAGAGAAGGATATCTGACTTTGAGAAGAAGCCTCAGTCCTTTTAAAGGGAACATGCCCCCAAGTTGTAGTAGGCGGAGAGACATGGGGAACGAGTGTATTGACCTGTGTCCTGCGTGTCTTCTCAAACAACTGGTTTTCAGTAGAGAAACGGTGTGTAATGACATGATACTTTTCTCCAGTTTTTGTACTTGTTTTTGAAACAACACTATTTCAAAGGGTAATTATKTTTTTCATTTACACTGAATTGTTTTTTTACGATTTATGTTTTTATTTGGTTGTTTTTGGTTCTGCAGATGGAACTGCAAGATATTTGTGGCTCATTTACTCTGTGTTTCTGACCTGGTCTTGAGTAAGTTTTTTTTTTAATATAACAAGTAGTGATTTTCAAAAGTTTTAATTTTGGGAAAAATATTCAGAAAGTGTTAATATTTCTGTTATATTTGTTGAAAAAACACGTTGCTTCCAAAAACTTAACGGTCCATCTTTTGGGAGATTCAAAAGATTCACGTGGCTCACAAAAATTTTTGAAATTTCAGTACTTTGATGTGAAAATTAAAACTTTTGAAATTCACTACTTGTTATATGGTGAATTTTGCTAGCCACTGTTTCATAGGTGCCGTTACCAGTTCTTTTTGGATGGCTGTAATAGTGGAAAGTTAGATGGAAGGGTAGACGCTTCCAAGTGGCTTATGTGCTCAGAATGAAGAATATGAAGAATATGAAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACGAGTGTATTGACCTGTG</pcr_primer_p1>
		<pcr_primer_p2>ACAGAGTAAATGAGCCACAAATA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GAACGAGTGTATTGACCTGTGTCCTGCGTGTCTTCTCAAACAACTGGTTTTCAGTAGAGAAACGGTGTGTAATGACATGATACTTTTCTCCAGTTTTTGTACTTGTTTTTGAAACAACACTATTTCAAAGGGTAATTATTTTTTTCATTTACACTGAATTGTTTTTTTACGATTTATGTTTTTATTTGGTTGTTTTTGGTTCTGCAGATGGAACTGCAAGATATTTGTGGCTCATTTACTCTGT</canonical_amplicon>
		<polymorphic_amplicon>GAACGAGTGTATTGACCTGTGTCCTGCGTGTCTTCTCAAACAACTGGTTTTCAGTAGAGAAACGGTGTGTAATGACATGATACTTTTCTCCAGTTTTTGTACTTGTTTTTGAAACAACACTATTTCAAAGGGTAATTATKTTTTTCATTTACACTGAATTGTTTTTTTACGATTTATGTTTTTATTTGGTTGTTTTTGGTTCTGCAGATGGAACTGCAAGATATTTGTGGCTCATTTACTCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12974</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>186733</contig_pos>
        <strand>+</strand>
        <context>TGGATCCACG[A/G]GACATGATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAATCAAAGGAAATTATTGAGGCAATGGTTTAGGAACAGTGGATCCACG</left_flank>
        <right_flank>GACATGATTTCCATCTTGAATGTCCATATAAATGGAGGCCATTTCATTGT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATGTCAACTACTCATAGTAGCAATTTAGATCGATTTTGCATTCTCTGAGAAAACCTAAAGATTTTTTTTTTGAAACGAAAATGTAATTTGCTTTTTGAGAACGAATTAGCTCATTTTAATGAAAAATGACGAATATTTGCTATTTGGTGGCTATCATAGATTCAAGTACGAATTGGCTACAAATCTCCAGGATGACATTCTAGCTATAGTTACATTTTTTCTCAATCTGATAAGAACCGATGTTATGTAATTAGCAAATCAAAAGAGACGAAGTCGGTAATGAACGAATCCCTCTCTATCTTGAGGGCGTTAATCATTTCTCACGACACTTTCACTAAAGAAAGCATCCCTAGTGTAATAAGTGATGTGGTGTTTGATCGAAAAGAAGATTCCAAACATTCCTTCTGAATATTAAATGAGATTCATTTGGTGGCTTATTTTATGGGAAGAATCAAAGGAAATTATTGAGGCAATGGTTTAGGAACAGTGGATCCACGGGACATGATTTCCATCTTGAATGTCCATATAAATGGAGGCCATTTCATTGTCGCTTTTCCACCATACACAACAATCTCCAACTCTTCATTAATGGGGATTGTGACAGAATGAGCGAAGTAACTAGTTCTGTAAGAAAATACATTTTTTGTATAAAAATTTTTTAATTACCCAAGACTTATAACTTTGGAAGGGATGGCCCCCAGATGTTGCTTCAAATGATCGTGAACTTCAATAACATAGCTGTAGTGCTCAATAACCAATAAAAATGTTTGCCCGATCGGTTTCGAAGTTTCCTTCCAATGCTGAAAATGAAATTTTACGAATTTTCTAACTGGGAAAAACCTACAGCAGCCAACTCTCGAATTTTCTCGATAGGAAAATTCAGATAAGTGATTGAAATGTGTTTGTGCGGCAGAGTCAGGAAAAGATCATCGATTGGATCTGGGTCATAGTACGGGAAATAGAGAACGATTCTCTGGCTATTTAAAATCTGGGAAAAA</canonical>
            <polymorphic>AGATGTCAACTACTCATAGTAGCAATTTAGATCGATTTTGCATTCTCTGAGAAAACCTAAAGATTTTTTTTTTGAAACGAAAATGTAATTTGCTTTTTGAGAACGAATTAGCTCATTTTAATGAAAAATGACGAATATTTGCTATTTGGTGGCTATCATAGATTCAAGTACGAATTGGCTACAAATCTCCAGGATGACATTCTAGCTATAGTTACATTTTTTCTCAATCTGATAAGAACCGATGTTATGTAATTAGCAAATCAAAAGAGACGAAGTCGGTAATGAACGAATCCCTCTCTATCTTGAGGGCGTTAATCATTTCTCACGACACTTTCACTAAAGAAAGCATCCCTAGTGTAATAAGTGATGTGGTGTTTGATCGAAAAGAAGATTCCAAACATTCCTTCTGAATATTAAATGAGATTCATTTGGTGGCTTATTTTATGGGAAGAATCAAAGGAAATTATTGAGGCAATGGTTTAGGAACAGTGGATCCACGRGACATGATTTCCATCTTGAATGTCCATATAAATGGAGGCCATTTCATTGTCGCTTTTCCACCATACACAACAATCTCCAACTCTTCATTAATGGGGATTGTGACAGAATGAGCGAAGTAACTAGTTCTGTAAGAAAATACATTTTTTGTATAAAAATTTTTTAATTACCCAAGACTTATAACTTTGGAAGGGATGGCCCCCAGATGTTGCTTCAAATGATCGTGAACTTCAATAACATAGCTGTAGTGCTCAATAACCAATAAAAATGTTTGCCCGATCGGTTTCGAAGTTTCCTTCCAATGCTGAAAATGAAATTTTACGAATTTTCTAACTGGGAAAAACCTACAGCAGCCAACTCTCGAATTTTCTCGATAGGAAAATTCAGATAAGTGATTGAAATGTGTTTGTGCGGCAGAGTCAGGAAAAGATCATCGATTGGATCTGGGTCATAGTACGGGAAATAGAGAACGATTCTCTGGCTATTTAAAATCTGGGAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCATCCCTAGTGTAATAAGTGA</pcr_primer_p1>
		<pcr_primer_p2>CATTAATGAAGAGTTGGAGATTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGCATCCCTAGTGTAATAAGTGATGTGGTGTTTGATCGAAAAGAAGATTCCAAACATTCCTTCTGAATATTAAATGAGATTCATTTGGTGGCTTATTTTATGGGAAGAATCAAAGGAAATTATTGAGGCAATGGTTTAGGAACAGTGGATCCACGGGACATGATTTCCATCTTGAATGTCCATATAAATGGAGGCCATTTCATTGTCGCTTTTCCACCATACACAACAATCTCCAACTCTTCATTAATG</canonical_amplicon>
		<polymorphic_amplicon>AGCATCCCTAGTGTAATAAGTGATGTGGTGTTTGATCGAAAAGAAGATTCCAAACATTCCTTCTGAATATTAAATGAGATTCATTTGGTGGCTTATTTTATGGGAAGAATCAAAGGAAATTATTGAGGCAATGGTTTAGGAACAGTGGATCCACGRGACATGATTTCCATCTTGAATGTCCATATAAATGGAGGCCATTTCATTGTCGCTTTTCCACCATACACAACAATCTCCAACTCTTCATTAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12975</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>186721</contig_pos>
        <strand>+</strand>
        <context>GTTTAGGAAC[A/T]GTGGATCCAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATTTTATGGGAAGAATCAAAGGAAATTATTGAGGCAATGGTTTAGGAAC</left_flank>
        <right_flank>GTGGATCCACGGGACATGATTTCCATCTTGAATGTCCATATAAATGGAGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAATTAAAAAGAGATGTCAACTACTCATAGTAGCAATTTAGATCGATTTTGCATTCTCTGAGAAAACCTAAAGATTTTTTTTTTGAAACGAAAATGTAATTTGCTTTTTGAGAACGAATTAGCTCATTTTAATGAAAAATGACGAATATTTGCTATTTGGTGGCTATCATAGATTCAAGTACGAATTGGCTACAAATCTCCAGGATGACATTCTAGCTATAGTTACATTTTTTCTCAATCTGATAAGAACCGATGTTATGTAATTAGCAAATCAAAAGAGACGAAGTCGGTAATGAACGAATCCCTCTCTATCTTGAGGGCGTTAATCATTTCTCACGACACTTTCACTAAAGAAAGCATCCCTAGTGTAATAAGTGATGTGGTGTTTGATCGAAAAGAAGATTCCAAACATTCCTTCTGAATATTAAATGAGATTCATTTGGTGGCTTATTTTATGGGAAGAATCAAAGGAAATTATTGAGGCAATGGTTTAGGAACAGTGGATCCACGGGACATGATTTCCATCTTGAATGTCCATATAAATGGAGGCCATTTCATTGTCGCTTTTCCACCATACACAACAATCTCCAACTCTTCATTAATGGGGATTGTGACAGAATGAGCGAAGTAACTAGTTCTGTAAGAAAATACATTTTTTGTATAAAAATTTTTTAATTACCCAAGACTTATAACTTTGGAAGGGATGGCCCCCAGATGTTGCTTCAAATGATCGTGAACTTCAATAACATAGCTGTAGTGCTCAATAACCAATAAAAATGTTTGCCCGATCGGTTTCGAAGTTTCCTTCCAATGCTGAAAATGAAATTTTACGAATTTTCTAACTGGGAAAAACCTACAGCAGCCAACTCTCGAATTTTCTCGATAGGAAAATTCAGATAAGTGATTGAAATGTGTTTGTGCGGCAGAGTCAGGAAAAGATCATCGATTGGATCTGGGTCATAGTACGGGAAATAGAGAACGATTCTCTGGCTATTTAAA</canonical>
            <polymorphic>GTAATTAAAAAGAGATGTCAACTACTCATAGTAGCAATTTAGATCGATTTTGCATTCTCTGAGAAAACCTAAAGATTTTTTTTTTGAAACGAAAATGTAATTTGCTTTTTGAGAACGAATTAGCTCATTTTAATGAAAAATGACGAATATTTGCTATTTGGTGGCTATCATAGATTCAAGTACGAATTGGCTACAAATCTCCAGGATGACATTCTAGCTATAGTTACATTTTTTCTCAATCTGATAAGAACCGATGTTATGTAATTAGCAAATCAAAAGAGACGAAGTCGGTAATGAACGAATCCCTCTCTATCTTGAGGGCGTTAATCATTTCTCACGACACTTTCACTAAAGAAAGCATCCCTAGTGTAATAAGTGATGTGGTGTTTGATCGAAAAGAAGATTCCAAACATTCCTTCTGAATATTAAATGAGATTCATTTGGTGGCTTATTTTATGGGAAGAATCAAAGGAAATTATTGAGGCAATGGTTTAGGAACWGTGGATCCACGGGACATGATTTCCATCTTGAATGTCCATATAAATGGAGGCCATTTCATTGTCGCTTTTCCACCATACACAACAATCTCCAACTCTTCATTAATGGGGATTGTGACAGAATGAGCGAAGTAACTAGTTCTGTAAGAAAATACATTTTTTGTATAAAAATTTTTTAATTACCCAAGACTTATAACTTTGGAAGGGATGGCCCCCAGATGTTGCTTCAAATGATCGTGAACTTCAATAACATAGCTGTAGTGCTCAATAACCAATAAAAATGTTTGCCCGATCGGTTTCGAAGTTTCCTTCCAATGCTGAAAATGAAATTTTACGAATTTTCTAACTGGGAAAAACCTACAGCAGCCAACTCTCGAATTTTCTCGATAGGAAAATTCAGATAAGTGATTGAAATGTGTTTGTGCGGCAGAGTCAGGAAAAGATCATCGATTGGATCTGGGTCATAGTACGGGAAATAGAGAACGATTCTCTGGCTATTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCATCCCTAGTGTAATAAGTGA</pcr_primer_p1>
		<pcr_primer_p2>CATTAATGAAGAGTTGGAGATTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGCATCCCTAGTGTAATAAGTGATGTGGTGTTTGATCGAAAAGAAGATTCCAAACATTCCTTCTGAATATTAAATGAGATTCATTTGGTGGCTTATTTTATGGGAAGAATCAAAGGAAATTATTGAGGCAATGGTTTAGGAACAGTGGATCCACGGGACATGATTTCCATCTTGAATGTCCATATAAATGGAGGCCATTTCATTGTCGCTTTTCCACCATACACAACAATCTCCAACTCTTCATTAATG</canonical_amplicon>
		<polymorphic_amplicon>AGCATCCCTAGTGTAATAAGTGATGTGGTGTTTGATCGAAAAGAAGATTCCAAACATTCCTTCTGAATATTAAATGAGATTCATTTGGTGGCTTATTTTATGGGAAGAATCAAAGGAAATTATTGAGGCAATGGTTTAGGAACWGTGGATCCACGGGACATGATTTCCATCTTGAATGTCCATATAAATGGAGGCCATTTCATTGTCGCTTTTCCACCATACACAACAATCTCCAACTCTTCATTAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12976</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>186696</contig_pos>
        <strand>+</strand>
        <context>ATCAAAGGAA[A/G]TTATTGAGGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTAAATGAGATTCATTTGGTGGCTTATTTTATGGGAAGAATCAAAGGAA</left_flank>
        <right_flank>TTATTGAGGCAATGGTTTAGGAACAGTGGATCCACGGGACATGATTTCCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTTTTCTATTGGCGGAAGTATAGTAATTAAAAAGAGATGTCAACTACTCATAGTAGCAATTTAGATCGATTTTGCATTCTCTGAGAAAACCTAAAGATTTTTTTTTTGAAACGAAAATGTAATTTGCTTTTTGAGAACGAATTAGCTCATTTTAATGAAAAATGACGAATATTTGCTATTTGGTGGCTATCATAGATTCAAGTACGAATTGGCTACAAATCTCCAGGATGACATTCTAGCTATAGTTACATTTTTTCTCAATCTGATAAGAACCGATGTTATGTAATTAGCAAATCAAAAGAGACGAAGTCGGTAATGAACGAATCCCTCTCTATCTTGAGGGCGTTAATCATTTCTCACGACACTTTCACTAAAGAAAGCATCCCTAGTGTAATAAGTGATGTGGTGTTTGATCGAAAAGAAGATTCCAAACATTCCTTCTGAATATTAAATGAGATTCATTTGGTGGCTTATTTTATGGGAAGAATCAAAGGAAATTATTGAGGCAATGGTTTAGGAACAGTGGATCCACGGGACATGATTTCCATCTTGAATGTCCATATAAATGGAGGCCATTTCATTGTCGCTTTTCCACCATACACAACAATCTCCAACTCTTCATTAATGGGGATTGTGACAGAATGAGCGAAGTAACTAGTTCTGTAAGAAAATACATTTTTTGTATAAAAATTTTTTAATTACCCAAGACTTATAACTTTGGAAGGGATGGCCCCCAGATGTTGCTTCAAATGATCGTGAACTTCAATAACATAGCTGTAGTGCTCAATAACCAATAAAAATGTTTGCCCGATCGGTTTCGAAGTTTCCTTCCAATGCTGAAAATGAAATTTTACGAATTTTCTAACTGGGAAAAACCTACAGCAGCCAACTCTCGAATTTTCTCGATAGGAAAATTCAGATAAGTGATTGAAATGTGTTTGTGCGGCAGAGTCAGGAAAAGATCATCGATTGGATCTGGGTCATAGTACGGGAAATA</canonical>
            <polymorphic>TATTTTTTCTATTGGCGGAAGTATAGTAATTAAAAAGAGATGTCAACTACTCATAGTAGCAATTTAGATCGATTTTGCATTCTCTGAGAAAACCTAAAGATTTTTTTTTTGAAACGAAAATGTAATTTGCTTTTTGAGAACGAATTAGCTCATTTTAATGAAAAATGACGAATATTTGCTATTTGGTGGCTATCATAGATTCAAGTACGAATTGGCTACAAATCTCCAGGATGACATTCTAGCTATAGTTACATTTTTTCTCAATCTGATAAGAACCGATGTTATGTAATTAGCAAATCAAAAGAGACGAAGTCGGTAATGAACGAATCCCTCTCTATCTTGAGGGCGTTAATCATTTCTCACGACACTTTCACTAAAGAAAGCATCCCTAGTGTAATAAGTGATGTGGTGTTTGATCGAAAAGAAGATTCCAAACATTCCTTCTGAATATTAAATGAGATTCATTTGGTGGCTTATTTTATGGGAAGAATCAAAGGAARTTATTGAGGCAATGGTTTAGGAACAGTGGATCCACGGGACATGATTTCCATCTTGAATGTCCATATAAATGGAGGCCATTTCATTGTCGCTTTTCCACCATACACAACAATCTCCAACTCTTCATTAATGGGGATTGTGACAGAATGAGCGAAGTAACTAGTTCTGTAAGAAAATACATTTTTTGTATAAAAATTTTTTAATTACCCAAGACTTATAACTTTGGAAGGGATGGCCCCCAGATGTTGCTTCAAATGATCGTGAACTTCAATAACATAGCTGTAGTGCTCAATAACCAATAAAAATGTTTGCCCGATCGGTTTCGAAGTTTCCTTCCAATGCTGAAAATGAAATTTTACGAATTTTCTAACTGGGAAAAACCTACAGCAGCCAACTCTCGAATTTTCTCGATAGGAAAATTCAGATAAGTGATTGAAATGTGTTTGTGCGGCAGAGTCAGGAAAAGATCATCGATTGGATCTGGGTCATAGTACGGGAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>211 193 150 85 78 67 63 40 33 27 19 17 9 8</canonical_bands>
                <polymorphic_bands>404 150 85 78 67 63 40 33 27 19 17 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCATCCCTAGTGTAATAAGTGA</pcr_primer_p1>
		<pcr_primer_p2>CATTAATGAAGAGTTGGAGATTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGCATCCCTAGTGTAATAAGTGATGTGGTGTTTGATCGAAAAGAAGATTCCAAACATTCCTTCTGAATATTAAATGAGATTCATTTGGTGGCTTATTTTATGGGAAGAATCAAAGGAAATTATTGAGGCAATGGTTTAGGAACAGTGGATCCACGGGACATGATTTCCATCTTGAATGTCCATATAAATGGAGGCCATTTCATTGTCGCTTTTCCACCATACACAACAATCTCCAACTCTTCATTAATG</canonical_amplicon>
		<polymorphic_amplicon>AGCATCCCTAGTGTAATAAGTGATGTGGTGTTTGATCGAAAAGAAGATTCCAAACATTCCTTCTGAATATTAAATGAGATTCATTTGGTGGCTTATTTTATGGGAAGAATCAAAGGAARTTATTGAGGCAATGGTTTAGGAACAGTGGATCCACGGGACATGATTTCCATCTTGAATGTCCATATAAATGGAGGCCATTTCATTGTCGCTTTTCCACCATACACAACAATCTCCAACTCTTCATTAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12977</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>193192</contig_pos>
        <strand>+</strand>
        <context>TTCGATTCCC[C/T]GGATGTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACATAAACCCAAACCAAGTGCATATTAAGCCAGACGTTGTTCGATTCCC</left_flank>
        <right_flank>GGATGTTTCACATTGGAAATCAAAAACGTAAAGGTCAAAGATTTGCCAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACGATAGTTGTCGCCACCCAAACCGTAAACTTGGAGCTTATATATCTCTGCTCCTGTTAAAGATATCAAAAAGTTGTCAACTGACGAAATTTTCATCTTAACATCAATAATTGTTTGTCAGTTGATCAGTTTTTGATATCTTTCACGGGAACCGAGATAAATGAGCTCAAAATTGGAGGGTCGAGTGGCTTTCTATTAGAGTGCTTACGATAATTTTCAAGATTGCGGCTATTTGAGCCCGTTACAACTCGCGTTTACTAATGTAAACTATTTCAGAAATGGTGTCCGCCACACGGACGCTCGCCGAAAGTTGAACCACAAATGCAACTATCAAGACATCTGGCTGGTTCCAGGAAGAGCCGACGCTAGTTGTAGTATGTCCTTTATTTTATATTCTCAGCACAATTCATCCGATTATCAGCCCGACCCGGTGCGAAGAAAGTTCTCGACATAAACCCAAACCAAGTGCATATTAAGCCAGACGTTGTTCGATTCCCTGGATGTTTCACATTGGAAATCAAAAACGTAAAGGTCAAAGATTTGCCAGAAGCCCTGGACAACAGTTTCTTCGCAAAAGCCGAGTATCAGTGGTGGAATGTGAAGGATTTCTCGAATATGAAGTGCCAAAACGCCAGTAACAATGGGTGTGGTGGATATGGAAATAATTGCTTCTTCTGTGATGTTTGCGAATCGTTGACCAATCTGGAGCAAGAAGAAGCTGAGCAATCGAACACATTAGCTGGACAGCTCAAAGGAATAAATTGCCCACAGCGACCTGGTTTTTACACTTTTAGAAAAGAGTTCTGCTTCAATGATTGGTCGGCGTTCGACGCTGATGGTGACTGTGAAATGGACTTTTTGCAAGGGGACCGAGGAGACTATAAGAGTGCTCTTGGAAGTTTACAGCAAGTTGGATACGTTAGTTTACTCGAGATAGGCCTAATACTGAAAATCAAAATTTCAGGGATCCGTCATTGCAAAAATCCGATTGGCATTCA</canonical>
            <polymorphic>TTACGATAGTTGTCGCCACCCAAACCGTAAACTTGGAGCTTATATATCTCTGCTCCTGTTAAAGATATCAAAAAGTTGTCAACTGACGAAATTTTCATCTTAACATCAATAATTGTTTGTCAGTTGATCAGTTTTTGATATCTTTCACGGGAACCGAGATAAATGAGCTCAAAATTGGAGGGTCGAGTGGCTTTCTATTAGAGTGCTTACGATAATTTTCAAGATTGCGGCTATTTGAGCCCGTTACAACTCGCGTTTACTAATGTAAACTATTTCAGAAATGGTGTCCGCCACACGGACGCTCGCCGAAAGTTGAACCACAAATGCAACTATCAAGACATCTGGCTGGTTCCAGGAAGAGCCGACGCTAGTTGTAGTATGTCCTTTATTTTATATTCTCAGCACAATTCATCCGATTATCAGCCCGACCCGGTGCGAAGAAAGTTCTCGACATAAACCCAAACCAAGTGCATATTAAGCCAGACGTTGTTCGATTCCCYGGATGTTTCACATTGGAAATCAAAAACGTAAAGGTCAAAGATTTGCCAGAAGCCCTGGACAACAGTTTCTTCGCAAAAGCCGAGTATCAGTGGTGGAATGTGAAGGATTTCTCGAATATGAAGTGCCAAAACGCCAGTAACAATGGGTGTGGTGGATATGGAAATAATTGCTTCTTCTGTGATGTTTGCGAATCGTTGACCAATCTGGAGCAAGAAGAAGCTGAGCAATCGAACACATTAGCTGGACAGCTCAAAGGAATAAATTGCCCACAGCGACCTGGTTTTTACACTTTTAGAAAAGAGTTCTGCTTCAATGATTGGTCGGCGTTCGACGCTGATGGTGACTGTGAAATGGACTTTTTGCAAGGGGACCGAGGAGACTATAAGAGTGCTCTTGGAAGTTTACAGCAAGTTGGATACGTTAGTTTACTCGAGATAGGCCTAATACTGAAAATCAAAATTTCAGGGATCCGTCATTGCAAAAATCCGATTGGCATTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>353 223 222 146 56</canonical_bands>
                <polymorphic_bands>353 223 222 202</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAAGAAAGTTCTCGACATAA</pcr_primer_p1>
		<pcr_primer_p2>AAACATCACAGAAGAAGCAATTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGAAGAAAGTTCTCGACATAAACCCAAACCAAGTGCATATTAAGCCAGACGTTGTTCGATTCCCTGGATGTTTCACATTGGAAATCAAAAACGTAAAGGTCAAAGATTTGCCAGAAGCCCTGGACAACAGTTTCTTCGCAAAAGCCGAGTATCAGTGGTGGAATGTGAAGGATTTCTCGAATATGAAGTGCCAAAACGCCAGTAACAATGGGTGTGGTGGATATGGAAATAATTGCTTCTTCTGTGATGTTT</canonical_amplicon>
		<polymorphic_amplicon>CGAAGAAAGTTCTCGACATAAACCCAAACCAAGTGCATATTAAGCCAGACGTTGTTCGATTCCCYGGATGTTTCACATTGGAAATCAAAAACGTAAAGGTCAAAGATTTGCCAGAAGCCCTGGACAACAGTTTCTTCGCAAAAGCCGAGTATCAGTGGTGGAATGTGAAGGATTTCTCGAATATGAAGTGCCAAAACGCCAGTAACAATGGGTGTGGTGGATATGGAAATAATTGCTTCTTCTGTGATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12978</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>204553</contig_pos>
        <strand>+</strand>
        <context>TGGAAACTCG[A/G]TCCACAGTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTGAAGCATTGTACAATAACGAACACCATCCATATTCGTGGAAACTCG</left_flank>
        <right_flank>TCCACAGTCAGTTATTTTGTAACGTGGAGATTCGAACAAAGCAACGAAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTGTAAGTTGCCTGCCGGAGAAGACCAGCCGATAGACCGTTGTAAATTGCAAAAAATCCCTCGTTTTTGATGATGGAAGTCAATGCGTGCATGCTGGAACGGTACTCCTTTTTACCGGTGGTTCCGGAGAGTTGCATTCGATTTTTCACCAAGTCCAGGGGTTGAACAACGAGCGTGGCTCCCATTCTATAAAATTAAATTTTTGAGAAATTGAGAAGATCGATTTGTGTTACCCAGCAGTTCCACCGAATGCAAACTTCACTGCGTTGGGTACTGTCGCCGTCTCGCCCGACATGTTCTCTCTGAAAAAAGCTGTGATTTAGCAGAGAAAACTTGAGTAAATCGATGGAAAAAGAGATATTTAGCTGTCCTCCAAAACAAAAACACAAGCGGAATGAGACATTATCAATGAACAGGGATCTTGGAGACCCAGACATCTAGAAAAAGATTTGAAGCATTGTACAATAACGAACACCATCCATATTCGTGGAAACTCGATCCACAGTCAGTTATTTTGTAACGTGGAGATTCGAACAAAGCAACGAAACATGAAGAGAGAAAGACATCGAAGTGTGTATTTTGAGCGCTTTTTGAGCGTTCTTTGTGAAAGAAACAGAGATAAGAAGAGGTGTGATTATTGTGTGAAAAATGAGGTTTTGAAAGAGACAGTTAACTTCTGATATGGAAAATGATGAAGTGTAATGGGGTTATTAATGATATTGTTTTGAAAGGATGAAACATAAAAACAAAGAAATCCAAGACAAGGAAAACCTAAAAAATAAATCGAATTCTTACTGATATCGAATTCCTACTGAGAAATCGAATTCCTACTCATGCTTCAAAGAGTTCAAATTTTCTTCGAAAATCAAAAAAGACGAATTCTTCAACAACTTCTTCGGTTTTCACACGGAAGCCTTCTGAAAATCTGCACGAAACACGAGTGTTGCGCCTTCTATCCGGTTTGCGTCTTCTTGGTGCCTTGGCGCGTTTTGCATATT</canonical>
            <polymorphic>TGGTGTAAGTTGCCTGCCGGAGAAGACCAGCCGATAGACCGTTGTAAATTGCAAAAAATCCCTCGTTTTTGATGATGGAAGTCAATGCGTGCATGCTGGAACGGTACTCCTTTTTACCGGTGGTTCCGGAGAGTTGCATTCGATTTTTCACCAAGTCCAGGGGTTGAACAACGAGCGTGGCTCCCATTCTATAAAATTAAATTTTTGAGAAATTGAGAAGATCGATTTGTGTTACCCAGCAGTTCCACCGAATGCAAACTTCACTGCGTTGGGTACTGTCGCCGTCTCGCCCGACATGTTCTCTCTGAAAAAAGCTGTGATTTAGCAGAGAAAACTTGAGTAAATCGATGGAAAAAGAGATATTTAGCTGTCCTCCAAAACAAAAACACAAGCGGAATGAGACATTATCAATGAACAGGGATCTTGGAGACCCAGACATCTAGAAAAAGATTTGAAGCATTGTACAATAACGAACACCATCCATATTCGTGGAAACTCGRTCCACAGTCAGTTATTTTGTAACGTGGAGATTCGAACAAAGCAACGAAACATGAAGAGAGAAAGACATCGAAGTGTGTATTTTGAGCGCTTTTTGAGCGTTCTTTGTGAAAGAAACAGAGATAAGAAGAGGTGTGATTATTGTGTGAAAAATGAGGTTTTGAAAGAGACAGTTAACTTCTGATATGGAAAATGATGAAGTGTAATGGGGTTATTAATGATATTGTTTTGAAAGGATGAAACATAAAAACAAAGAAATCCAAGACAAGGAAAACCTAAAAAATAAATCGAATTCTTACTGATATCGAATTCCTACTGAGAAATCGAATTCCTACTCATGCTTCAAAGAGTTCAAATTTTCTTCGAAAATCAAAAAAGACGAATTCTTCAACAACTTCTTCGGTTTTCACACGGAAGCCTTCTGAAAATCTGCACGAAACACGAGTGTTGCGCCTTCTATCCGGTTTGCGTCTTCTTGGTGCCTTGGCGCGTTTTGCATATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>502 219 200 79</canonical_bands>
                <polymorphic_bands>581 219 200</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>218 152 141 138 123 82 39 36 35 19 17</canonical_bands>
                <polymorphic_bands>218 187 141 138 123 82 39 36 19 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTATCAATGAACAGGGATCT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCACACAATAATCACACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTATCAATGAACAGGGATCTTGGAGACCCAGACATCTAGAAAAAGATTTGAAGCATTGTACAATAACGAACACCATCCATATTCGTGGAAACTCGATCCACAGTCAGTTATTTTGTAACGTGGAGATTCGAACAAAGCAACGAAACATGAAGAGAGAAAGACATCGAAGTGTGTATTTTGAGCGCTTTTTGAGCGTTCTTTGTGAAAGAAACAGAGATAAGAAGAGGTGTGATTATTGTGTGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CATTATCAATGAACAGGGATCTTGGAGACCCAGACATCTAGAAAAAGATTTGAAGCATTGTACAATAACGAACACCATCCATATTCGTGGAAACTCGRTCCACAGTCAGTTATTTTGTAACGTGGAGATTCGAACAAAGCAACGAAACATGAAGAGAGAAAGACATCGAAGTGTGTATTTTGAGCGCTTTTTGAGCGTTCTTTGTGAAAGAAACAGAGATAAGAAGAGGTGTGATTATTGTGTGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12979</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>204768</contig_pos>
        <strand>+</strand>
        <context>TGGGGTTATT[A/T]ATGATATTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGACAGTTAACTTCTGATATGGAAAATGATGAAGTGTAATGGGGTTATT</left_flank>
        <right_flank>ATGATATTGTTTTGAAAGGATGAAACATAAAAACAAAGAAATCCAAGACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAGATCGATTTGTGTTACCCAGCAGTTCCACCGAATGCAAACTTCACTGCGTTGGGTACTGTCGCCGTCTCGCCCGACATGTTCTCTCTGAAAAAAGCTGTGATTTAGCAGAGAAAACTTGAGTAAATCGATGGAAAAAGAGATATTTAGCTGTCCTCCAAAACAAAAACACAAGCGGAATGAGACATTATCAATGAACAGGGATCTTGGAGACCCAGACATCTAGAAAAAGATTTGAAGCATTGTACAATAACGAACACCATCCATATTCGTGGAAACTCGATCCACAGTCAGTTATTTTGTAACGTGGAGATTCGAACAAAGCAACGAAACATGAAGAGAGAAAGACATCGAAGTGTGTATTTTGAGCGCTTTTTGAGCGTTCTTTGTGAAAGAAACAGAGATAAGAAGAGGTGTGATTATTGTGTGAAAAATGAGGTTTTGAAAGAGACAGTTAACTTCTGATATGGAAAATGATGAAGTGTAATGGGGTTATTAATGATATTGTTTTGAAAGGATGAAACATAAAAACAAAGAAATCCAAGACAAGGAAAACCTAAAAAATAAATCGAATTCTTACTGATATCGAATTCCTACTGAGAAATCGAATTCCTACTCATGCTTCAAAGAGTTCAAATTTTCTTCGAAAATCAAAAAAGACGAATTCTTCAACAACTTCTTCGGTTTTCACACGGAAGCCTTCTGAAAATCTGCACGAAACACGAGTGTTGCGCCTTCTATCCGGTTTGCGTCTTCTTGGTGCCTTGGCGCGTTTTGCATATTTTCAAAAACGAAGCTTGCTCTTTTTACGACGAATTCGAAAGTTTTCCATTGACTTTCAAGTTTTTTAATGTTAAAAATCGAATTCCTTGCTGAAAATTCCATATATTCAGGCTATGGACAAATGGATCCCGGTGCTCTCCAGCCAGCTAGAATCTCCAGACTTTGAATTCACCACGGAGTTTATCGGCGGCGATTGTGTTGTGCAGGTATATCTT</canonical>
            <polymorphic>AGAAGATCGATTTGTGTTACCCAGCAGTTCCACCGAATGCAAACTTCACTGCGTTGGGTACTGTCGCCGTCTCGCCCGACATGTTCTCTCTGAAAAAAGCTGTGATTTAGCAGAGAAAACTTGAGTAAATCGATGGAAAAAGAGATATTTAGCTGTCCTCCAAAACAAAAACACAAGCGGAATGAGACATTATCAATGAACAGGGATCTTGGAGACCCAGACATCTAGAAAAAGATTTGAAGCATTGTACAATAACGAACACCATCCATATTCGTGGAAACTCGATCCACAGTCAGTTATTTTGTAACGTGGAGATTCGAACAAAGCAACGAAACATGAAGAGAGAAAGACATCGAAGTGTGTATTTTGAGCGCTTTTTGAGCGTTCTTTGTGAAAGAAACAGAGATAAGAAGAGGTGTGATTATTGTGTGAAAAATGAGGTTTTGAAAGAGACAGTTAACTTCTGATATGGAAAATGATGAAGTGTAATGGGGTTATTWATGATATTGTTTTGAAAGGATGAAACATAAAAACAAAGAAATCCAAGACAAGGAAAACCTAAAAAATAAATCGAATTCTTACTGATATCGAATTCCTACTGAGAAATCGAATTCCTACTCATGCTTCAAAGAGTTCAAATTTTCTTCGAAAATCAAAAAAGACGAATTCTTCAACAACTTCTTCGGTTTTCACACGGAAGCCTTCTGAAAATCTGCACGAAACACGAGTGTTGCGCCTTCTATCCGGTTTGCGTCTTCTTGGTGCCTTGGCGCGTTTTGCATATTTTCAAAAACGAAGCTTGCTCTTTTTACGACGAATTCGAAAGTTTTCCATTGACTTTCAAGTTTTTTAATGTTAAAAATCGAATTCCTTGCTGAAAATTCCATATATTCAGGCTATGGACAAATGGATCCCGGTGCTCTCCAGCCAGCTAGAATCTCCAGACTTTGAATTCACCACGGAGTTTATCGGCGGCGATTGTGTTGTGCAGGTATATCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>457 352 144 41 6</canonical_bands>
                <polymorphic_bands>457 393 144 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAGAGATAAGAAGAGGTGTGA</pcr_primer_p1>
		<pcr_primer_p2>GAAGAAAATTTGAACTCTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACAGAGATAAGAAGAGGTGTGATTATTGTGTGAAAAATGAGGTTTTGAAAGAGACAGTTAACTTCTGATATGGAAAATGATGAAGTGTAATGGGGTTATTAATGATATTGTTTTGAAAGGATGAAACATAAAAACAAAGAAATCCAAGACAAGGAAAACCTAAAAAATAAATCGAATTCTTACTGATATCGAATTCCTACTGAGAAATCGAATTCCTACTCATGCTTCAAAGAGTTCAAATTTTCTTC</canonical_amplicon>
		<polymorphic_amplicon>AACAGAGATAAGAAGAGGTGTGATTATTGTGTGAAAAATGAGGTTTTGAAAGAGACAGTTAACTTCTGATATGGAAAATGATGAAGTGTAATGGGGTTATTWATGATATTGTTTTGAAAGGATGAAACATAAAAACAAAGAAATCCAAGACAAGGAAAACCTAAAAAATAAATCGAATTCTTACTGATATCGAATTCCTACTGAGAAATCGAATTCCTACTCATGCTTCAAAGAGTTCAAATTTTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12980</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>204985</contig_pos>
        <strand>+</strand>
        <context>GAAAATCTGC[A/G]CGAAACACGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTTCAACAACTTCTTCGGTTTTCACACGGAAGCCTTCTGAAAATCTGC</left_flank>
        <right_flank>CGAAACACGAGTGTTGCGCCTTCTATCCGGTTTGCGTCTTCTTGGTGCCT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGACATCTAGAAAAAGATTTGAAGCATTGTACAATAACGAACACCATCCATATTCGTGGAAACTCGATCCACAGTCAGTTATTTTGTAACGTGGAGATTCGAACAAAGCAACGAAACATGAAGAGAGAAAGACATCGAAGTGTGTATTTTGAGCGCTTTTTGAGCGTTCTTTGTGAAAGAAACAGAGATAAGAAGAGGTGTGATTATTGTGTGAAAAATGAGGTTTTGAAAGAGACAGTTAACTTCTGATATGGAAAATGATGAAGTGTAATGGGGTTATTAATGATATTGTTTTGAAAGGATGAAACATAAAAACAAAGAAATCCAAGACAAGGAAAACCTAAAAAATAAATCGAATTCTTACTGATATCGAATTCCTACTGAGAAATCGAATTCCTACTCATGCTTCAAAGAGTTCAAATTTTCTTCGAAAATCAAAAAAGACGAATTCTTCAACAACTTCTTCGGTTTTCACACGGAAGCCTTCTGAAAATCTGCACGAAACACGAGTGTTGCGCCTTCTATCCGGTTTGCGTCTTCTTGGTGCCTTGGCGCGTTTTGCATATTTTCAAAAACGAAGCTTGCTCTTTTTACGACGAATTCGAAAGTTTTCCATTGACTTTCAAGTTTTTTAATGTTAAAAATCGAATTCCTTGCTGAAAATTCCATATATTCAGGCTATGGACAAATGGATCCCGGTGCTCTCCAGCCAGCTAGAATCTCCAGACTTTGAATTCACCACGGAGTTTATCGGCGGCGATTGTGTTGTGCAGGTATATCTTTTTTGCGATGAAAAAATTCTCACAGATTCTTCAGAAAGATTTTCTCGAAGATGAGGCAACAGGAAAACAATGTGGATGGATGATTCATGTCTACTTTCGGCCGAAAGAATTCCAAGATCGTCCGTTCGTGGCAGATATTGTTTTTCGATGTGGAACAAAGAGACGAGAGGTATTCAGAAGAGTTTTTTTTTCATATGATTGAAATTTCAGTTGATGT</canonical>
            <polymorphic>CAGACATCTAGAAAAAGATTTGAAGCATTGTACAATAACGAACACCATCCATATTCGTGGAAACTCGATCCACAGTCAGTTATTTTGTAACGTGGAGATTCGAACAAAGCAACGAAACATGAAGAGAGAAAGACATCGAAGTGTGTATTTTGAGCGCTTTTTGAGCGTTCTTTGTGAAAGAAACAGAGATAAGAAGAGGTGTGATTATTGTGTGAAAAATGAGGTTTTGAAAGAGACAGTTAACTTCTGATATGGAAAATGATGAAGTGTAATGGGGTTATTAATGATATTGTTTTGAAAGGATGAAACATAAAAACAAAGAAATCCAAGACAAGGAAAACCTAAAAAATAAATCGAATTCTTACTGATATCGAATTCCTACTGAGAAATCGAATTCCTACTCATGCTTCAAAGAGTTCAAATTTTCTTCGAAAATCAAAAAAGACGAATTCTTCAACAACTTCTTCGGTTTTCACACGGAAGCCTTCTGAAAATCTGCRCGAAACACGAGTGTTGCGCCTTCTATCCGGTTTGCGTCTTCTTGGTGCCTTGGCGCGTTTTGCATATTTTCAAAAACGAAGCTTGCTCTTTTTACGACGAATTCGAAAGTTTTCCATTGACTTTCAAGTTTTTTAATGTTAAAAATCGAATTCCTTGCTGAAAATTCCATATATTCAGGCTATGGACAAATGGATCCCGGTGCTCTCCAGCCAGCTAGAATCTCCAGACTTTGAATTCACCACGGAGTTTATCGGCGGCGATTGTGTTGTGCAGGTATATCTTTTTTGCGATGAAAAAATTCTCACAGATTCTTCAGAAAGATTTTCTCGAAGATGAGGCAACAGGAAAACAATGTGGATGGATGATTCATGTCTACTTTCGGCCGAAAGAATTCCAAGATCGTCCGTTCGTGGCAGATATTGTTTTTCGATGTGGAACAAAGAGACGAGAGGTATTCAGAAGAGTTTTTTTTTCATATGATTGAAATTTCAGTTGATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>498 229 209 64</canonical_bands>
                <polymorphic_bands>562 229 209</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>206 155 65 56 55 52 49 44 37 34 34 31 25 24 23 22 22 15 13 9 7 6 5 3 2 2 2 2</canonical_bands>
                <polymorphic_bands>206 155 65 56 55 52 49 44 37 34 34 31 30 25 24 22 22 15 13 9 6 5 3 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTGAGAAATCGAATTCCTACTC</pcr_primer_p1>
		<pcr_primer_p2>AACTTGAAAGTCAATGGAAAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTGAGAAATCGAATTCCTACTCATGCTTCAAAGAGTTCAAATTTTCTTCGAAAATCAAAAAAGACGAATTCTTCAACAACTTCTTCGGTTTTCACACGGAAGCCTTCTGAAAATCTGCACGAAACACGAGTGTTGCGCCTTCTATCCGGTTTGCGTCTTCTTGGTGCCTTGGCGCGTTTTGCATATTTTCAAAAACGAAGCTTGCTCTTTTTACGACGAATTCGAAAGTTTTCCATTGACTTTCAAGTT</canonical_amplicon>
		<polymorphic_amplicon>ACTGAGAAATCGAATTCCTACTCATGCTTCAAAGAGTTCAAATTTTCTTCGAAAATCAAAAAAGACGAATTCTTCAACAACTTCTTCGGTTTTCACACGGAAGCCTTCTGAAAATCTGCRCGAAACACGAGTGTTGCGCCTTCTATCCGGTTTGCGTCTTCTTGGTGCCTTGGCGCGTTTTGCATATTTTCAAAAACGAAGCTTGCTCTTTTTACGACGAATTCGAAAGTTTTCCATTGACTTTCAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12981</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>244882</contig_pos>
        <strand></strand>
        <context>ATGATAAATA[C/A]ATTTTATAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AATGACTTTTTTGAGGAACGGAACCCGGGATCCTGTGTTTATGATAAATA</left_flank>
        <right_flank>ATTTTATAATAAATTCAATTTTCTAGGCGCCATGGCTCAACTGATTCCCC</right_flank>
        <qual_score>35</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTTTACGGTTATGAAACACTTGAAAATTGGATTTCTAGGTCGTGGAGACAAAGCAAGAACCATTGATTTATGCGATCAGATTTGGTGGAGTACTATTGACCTGTAAGTGAACTAGTGATCTAAAAAAATTAGCAGCTCAATTGGGAATTCGAGAAAATTAACAAGTATCCTAACTAGAATAAAAAATAATGAAAAAAGTAACATAGTTTTTGTTTTCTGTGGGTACCGTAAAGACTAGTACATAGAAGGCTTAAACTTTGAGCTCGATTATCTCAATTTCTATAAGAGATATCAAAAAGATATCAACTGATAAAGTGTTGGTTATATTATGAGAGACATTTTATCAGTTGATACACTTTTGTTATCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGCAAGCATAGGGTGAGCTTCTTTTAAGGTGTTTACCAGAGATGCACGGAATGACTTTTTTGAGGAACGGAACCCGGGATCCTGTGTTTATGATAAATACATTTTATAATAAATTCAATTTTCTAGGCGCCATGGCTCAACTGATTCCCCACTTGGCACTATTCATCTCTCTCGTTGGAAGTGTAGCTGGAACATCCCTCACCCTTGTCTTCCCACCACTTATCGAGCTTTTGTGCTGCTATTCAAGGCAAGAATTGACCAAATGGGTTTGGATAAGAAACATTGGATTGATGCTGTTCGCTTTAGTCGGATTCACAACTGGTACCTATGCCAGTATGGTACAGATTGTGGAGGCTTTTGGAAAGTCTGATGTTTAGAAATTTTAATTTTTAGAGTTTTGTTTTGATGATAATTTGATGATGTTGGTTTTTCGAATGAGCTAGATAGAGTTTTTAAAGAAATAAAATTGTTTGATCTCAATTTGCTTGTTTTGTTTGCAGAATCTCATTTTGAATATTTTTGTGCTTCCTGCTTTACAGTAATCCTGGACGTTAATACCCTGCTCCACATAATCATTGTTCCACCCTGAGATTTCACTGG</canonical>
            <polymorphic>GGTTTTACGGTTATGAAACACTTGAAAATTGGATTTCTAGGTCGTGGAGACAAAGCAAGAACCATTGATTTATGCGATCAGATTTGGTGGAGTACTATTGACCTGTAAGTGAACTAGTGATCTAAAAAAATTAGCAGCTCAATTGGGAATTCGAGAAAATTAACAAGTATCCTAACTAGAATAAAAAATAATGAAAAAAGTAACATAGTTTTTGTTTTCTGTGGGTACCGTAAAGACTAGTACATAGAAGGCTTAAACTTTGAGCTCGATTATCTCAATTTCTATAAGAGATATCAAAAAGATATCAACTGATAAAGTGTTGGTTATATTATGAGAGACATTTTATCAGTTGATACACTTTTGTTATCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGCAAGCATAGGGTGAGCTTCTTTTAAGGTGTTTACCAGAGATGCACGGAATGACTTTTTTGAGGAACGGAACCCGGGATCCTGTGTTTATGATAAATAMATTTTATAATAAATTCAATTTTCTAGGCGCCATGGCTCAACTGATTCCCCACTTGGCACTATTCATCTCTCTCGTTGGAAGTGTAGCTGGAACATCCCTCACCCTTGTCTTCCCACCACTTATCGAGCTTTTGTGCTGCTATTCAAGGCAAGAATTGACCAAATGGGTTTGGATAAGAAACATTGGATTGATGCTGTTCGCTTTAGTCGGATTCACAACTGGTACCTATGCCAGTATGGTACAGATTGTGGAGGCTTTTGGAAAGTCTGATGTTTAGAAATTTTAATTTTTAGAGTTTTGTTTTGATGATAATTTGATGATGTTGGTTTTTCGAATGAGCTAGATAGAGTTTTTAAAGAAATAAAATTGTTTGATCTCAATTTGCTTGTTTTGTTTGCAGAATCTCATTTTGAATATTTTTGTGCTTCCTGCTTTACAGTAATCCTGGACGTTAATACCCTGCTCCACATAATCATTGTTCCACCCTGAGATTTCACTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTAACATAGTTTTTGTTTTCTGTG</pcr_primer_p1>
		<pcr_primer_p2>AGAGATGAATAGTGCCAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>373</pcr_amplicon_size>
		<canonical_amplicon>AAGTAACATAGTTTTTGTTTTCTGTGGGTACCGTAAAGACTAGTACATAGAAGGCTTAAACTTTGAGCTCGATTATCTCAATTTCTATAAGAGATATCAAAAAGATATCAACTGATAAAGTGTTGGTTATATTATGAGAGACATTTTATCAGTTGATACACTTTTGTTATCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGCAAGCATAGGGTGAGCTTCTTTTAAGGTGTTTACCAGAGATGCACGGAATGACTTTTTTGAGGAACGGAACCCGGGATCCTGTGTTTATGATAAATACATTTTATAATAAATTCAATTTTCTAGGCGCCATGGCTCAACTGATTCCCCACTTGGCACTATTCATCTCT</canonical_amplicon>
		<polymorphic_amplicon>AAGTAACATAGTTTTTGTTTTCTGTGGGTACCGTAAAGACTAGTACATAGAAGGCTTAAACTTTGAGCTCGATTATCTCAATTTCTATAAGAGATATCAAAAAGATATCAACTGATAAAGTGTTGGTTATATTATGAGAGACATTTTATCAGTTGATACACTTTTGTTATCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGCAAGCATAGGGTGAGCTTCTTTTAAGGTGTTTACCAGAGATGCACGGAATGACTTTTTTGAGGAACGGAACCCGGGATCCTGTGTTTATGATAAATAMATTTTATAATAAATTCAATTTTCTAGGCGCCATGGCTCAACTGATTCCCCACTTGGCACTATTCATCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12982</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>246358</contig_pos>
        <strand></strand>
        <context>GAAAAATACA[T/A]TTTCAAAATG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGACAAGTAGTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACA</left_flank>
        <right_flank>TTTCAAAATGTCGTAAGTCGAATAATTGAATATTGAATGAGCTAGATAGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTCGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATAGAAAGGGAAAATGGTTTTTTACCGGGGAAAAACCAACCAAAAACCCCATTGCTCTCCGCCTGATCAATAGTCGTGATGTGCCCCAGTCTAGTGATGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAGTCCAGTGCCCAACAAGCCCACTTCACAAACTTTGAACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGGCACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGGCATTGTCGCCGTCATCAGAATAGTAATTATAGGGCAAGAAATCAAATATTTGAGTTTAATTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTAGTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAATTGAATATTGAATGAGCTAGATAGAGTTTAAAAAAAATTTATTTGATCTCAATTTGTTAATTTTCAAAATCACATTTTAAGACACGTTCTCTAGATTTCCTCTTGCTACAGTAATCCTCGGCGTTGATAGCCTTGAGAACTATCCCATTACTTTTTTTGCAATTTCGCTCTCCCACTCCCAATTTCTCACCATTCACATGTTGTGATATGACGAGAGAAAAGAATAAACCGCGCGAGAATTCTCTATCCATCTCTTGTCTTGTCAATTTCTCTTAGTCATCCTATCAATTTCATCTGCTACCTCCTCCTACTTTCCTTCTTCTGTTTCTTCTCTATTTACAGAAAAAAGAACAGAACACTCTTAGATTCTAATATATCGAGATTATCATCTTATCATCCAGTTCACACTTCTCTTTACTTTTCTAAAGTTTACTTTTCCCATGAGTATTGGAATTGATTTGGGAACCACTTTCTC</canonical>
            <polymorphic>CTTTCGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATAGAAAGGGAAAATGGTTTTTTACCGGGGAAAAACCAACCAAAAACCCCATTGCTCTCCGCCTGATCAATAGTCGTGATGTGCCCCAGTCTAGTGATGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAGTCCAGTGCCCAACAAGCCCACTTCACAAACTTTGAACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGGCACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGGCATTGTCGCCGTCATCAGAATAGTAATTATAGGGCAAGAAATCAAATATTTGAGTTTAATTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTAGTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACAWTTTCAAAATGTCGTAAGTCGAATAATTGAATATTGAATGAGCTAGATAGAGTTTAAAAAAAATTTATTTGATCTCAATTTGTTAATTTTCAAAATCACATTTTAAGACACGTTCTCTAGATTTCCTCTTGCTACAGTAATCCTCGGCGTTGATAGCCTTGAGAACTATCCCATTACTTTTTTTGCAATTTCGCTCTCCCACTCCCAATTTCTCACCATTCACATGTTGTGATATGACGAGAGAAAAGAATAAACCGCGCGAGAATTCTCTATCCATCTCTTGTCTTGTCAATTTCTCTTAGTCATCCTATCAATTTCATCTGCTACCTCCTCCTACTTTCCTTCTTCTGTTTCTTCTCTATTTACAGAAAAAAGAACAGAACACTCTTAGATTCTAATATATCGAGATTATCATCTTATCATCCAGTTCACACTTCTCTTTACTTTTCTAAAGTTTACTTTTCCCATGAGTATTGGAATTGATTTGGGAACCACTTTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGACAACCACACATGTATCA</pcr_primer_p1>
		<pcr_primer_p2>TTTTAAACTCTATCTAGCTCATTCAA</pcr_primer_p2>
		<pcr_amplicon_size>665</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCAAAATGTCGTAAGTCGAATAATTGAATATTGAATGAGCTAGATAGAGTTTAAAA</canonical_amplicon>
		<polymorphic_amplicon>AWTTTCAAAATGTCGTAAGTCGAATAATTGAATATTGAATGAGCTAGATAGAGTTTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12983</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>246387</contig_pos>
        <strand>+</strand>
        <context>CGAATAATTG[A/G]ATATTGAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAATTG</left_flank>
        <right_flank>ATATTGAATGAGCTAGATAGAGTTTAAAAAAAATTTATTTGATCTCAATT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGGCTCAGTACATAGAAAGGGAAAATGGTTTTTTACCGGGGAAAAACCAACCAAAAACCCCATTGCTCTCCGCCTGATCAATAGTCGTGATGTGCCCCAGTCTAGTGATGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAGTCCAGTGCCCAACAAGCCCACTTCACAAACTTTGAACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGGCACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGGCATTGTCGCCGTCATCAGAATAGTAATTATAGGGCAAGAAATCAAATATTTGAGTTTAATTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTAGTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAATTGAATATTGAATGAGCTAGATAGAGTTTAAAAAAAATTTATTTGATCTCAATTTGTTAATTTTCAAAATCACATTTTAAGACACGTTCTCTAGATTTCCTCTTGCTACAGTAATCCTCGGCGTTGATAGCCTTGAGAACTATCCCATTACTTTTTTTGCAATTTCGCTCTCCCACTCCCAATTTCTCACCATTCACATGTTGTGATATGACGAGAGAAAAGAATAAACCGCGCGAGAATTCTCTATCCATCTCTTGTCTTGTCAATTTCTCTTAGTCATCCTATCAATTTCATCTGCTACCTCCTCCTACTTTCCTTCTTCTGTTTCTTCTCTATTTACAGAAAAAAGAACAGAACACTCTTAGATTCTAATATATCGAGATTATCATCTTATCATCCAGTTCACACTTCTCTTTACTTTTCTAAAGTTTACTTTTCCCATGAGTATTGGAATTGATTTGGGAACCACTTTCTCGTGTGTTGCATATTATCAGAATGGACAAG</canonical>
            <polymorphic>AGAGGCTCAGTACATAGAAAGGGAAAATGGTTTTTTACCGGGGAAAAACCAACCAAAAACCCCATTGCTCTCCGCCTGATCAATAGTCGTGATGTGCCCCAGTCTAGTGATGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAGTCCAGTGCCCAACAAGCCCACTTCACAAACTTTGAACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGGCACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGGCATTGTCGCCGTCATCAGAATAGTAATTATAGGGCAAGAAATCAAATATTTGAGTTTAATTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTAGTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAATTGRATATTGAATGAGCTAGATAGAGTTTAAAAAAAATTTATTTGATCTCAATTTGTTAATTTTCAAAATCACATTTTAAGACACGTTCTCTAGATTTCCTCTTGCTACAGTAATCCTCGGCGTTGATAGCCTTGAGAACTATCCCATTACTTTTTTTGCAATTTCGCTCTCCCACTCCCAATTTCTCACCATTCACATGTTGTGATATGACGAGAGAAAAGAATAAACCGCGCGAGAATTCTCTATCCATCTCTTGTCTTGTCAATTTCTCTTAGTCATCCTATCAATTTCATCTGCTACCTCCTCCTACTTTCCTTCTTCTGTTTCTTCTCTATTTACAGAAAAAAGAACAGAACACTCTTAGATTCTAATATATCGAGATTATCATCTTATCATCCAGTTCACACTTCTCTTTACTTTTCTAAAGTTTACTTTTCCCATGAGTATTGGAATTGATTTGGGAACCACTTTCTCGTGTGTTGCATATTATCAGAATGGACAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>498 350 152</canonical_bands>
                <polymorphic_bands>650 350</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGACAACCACACATGTATCA</pcr_primer_p1>
		<pcr_primer_p2>AGAACGTGTCTTAAAATGTGATT</pcr_primer_p2>
		<pcr_amplicon_size>722</pcr_amplicon_size>
		<canonical_amplicon>GAATATTGAATGAGCTAGATAGAGTTTAAAAAAAATTTATTTGATCTCAATTTGTTAATTTTCAAAATCACATTTTAAGACACGTTCT</canonical_amplicon>
		<polymorphic_amplicon>GRATATTGAATGAGCTAGATAGAGTTTAAAAAAAATTTATTTGATCTCAATTTGTTAATTTTCAAAATCACATTTTAAGACACGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12984</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>248269</contig_pos>
        <strand>+</strand>
        <context>AAAATAAATT[A/C]TCCTATTCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAAAAGCAACAAGTTCACTTTTTGGTTAGCAACACAGACAAAAATAAATT</left_flank>
        <right_flank>TCCTATTCTTTTTTAGATGTAAAACGAATAATCGGCAGACGGTTTGATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTCCATTTATTGAATACTTGCTCGCTATTTTTTCAGCTGAAATTTGATTTTTTTCAGCCGAATTCTTCGAAAATTCAATTTCTGACATTAAAATACTTTTTTCAAAACCGAAGAACTTGGAATTCTGATTTTCTGACGTTTTTAGAGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCCGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCCGGATACGAAATGTCGCGGCTGTGAAATGTCCGGATACGAAATGTCCGGGAGCCGTACTGGTTGAGTCTTAGACGGGAACAACTCCATTTTTTTTTCAAAAATTCAGATATTCAGGGTGTCGAACAACGCCGTCTGTGTTGGCTATGACTGAAGATGGGGATTGTCTTATAGGACAACATGCAAAAGACGTGATCACAAAAGCAACAAGTTCACTTTTTGGTTAGCAACACAGACAAAAATAAATTCTCCTATTCTTTTTTAGATGTAAAACGAATAATCGGCAGACGGTTTGATGACGTTCTCCTTCAACGAGACATGCCTCTTTGGCCGTTTCGGGTTGAGAAGGATACCGATGGAACTCCCTATCTTCAAATTCAAAATGACGCTAAGAAAGTCAAATTCTCAGCTGTTACAGTATCCTCCTTGATTCTGAAATGTCTCAAAGAGAATGCGGAGAGAAAGTTAGGTGTTGAAGTGAAAAGTGCAGTGATTACGGTACCTGCTTATTTCAATGCCACGCAACGGAGAGCAACGGAAGAAGCGGCTGAAATGGCTGGGTTGAAGGTGTTGAGGATTTTAAACGAACCAACGGCAGCGGCAATTGCTTATAGTTTGAAGGTCACTTATCTTTTTCAGATTATTAGGAATCGTAATAATCCGAAACCCTATATTCCAGGGCCAACGCTTCTCCAGAAGAAATATATTGATATATGATCTGGGTGGTGGCACATTTGACGTAGCCGTTG</canonical>
            <polymorphic>GTTTTCCATTTATTGAATACTTGCTCGCTATTTTTTCAGCTGAAATTTGATTTTTTTCAGCCGAATTCTTCGAAAATTCAATTTCTGACATTAAAATACTTTTTTCAAAACCGAAGAACTTGGAATTCTGATTTTCTGACGTTTTTAGAGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCCGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCCGGATACGAAATGTCGCGGCTGTGAAATGTCCGGATACGAAATGTCCGGGAGCCGTACTGGTTGAGTCTTAGACGGGAACAACTCCATTTTTTTTTCAAAAATTCAGATATTCAGGGTGTCGAACAACGCCGTCTGTGTTGGCTATGACTGAAGATGGGGATTGTCTTATAGGACAACATGCAAAAGACGTGATCACAAAAGCAACAAGTTCACTTTTTGGTTAGCAACACAGACAAAAATAAATTMTCCTATTCTTTTTTAGATGTAAAACGAATAATCGGCAGACGGTTTGATGACGTTCTCCTTCAACGAGACATGCCTCTTTGGCCGTTTCGGGTTGAGAAGGATACCGATGGAACTCCCTATCTTCAAATTCAAAATGACGCTAAGAAAGTCAAATTCTCAGCTGTTACAGTATCCTCCTTGATTCTGAAATGTCTCAAAGAGAATGCGGAGAGAAAGTTAGGTGTTGAAGTGAAAAGTGCAGTGATTACGGTACCTGCTTATTTCAATGCCACGCAACGGAGAGCAACGGAAGAAGCGGCTGAAATGGCTGGGTTGAAGGTGTTGAGGATTTTAAACGAACCAACGGCAGCGGCAATTGCTTATAGTTTGAAGGTCACTTATCTTTTTCAGATTATTAGGAATCGTAATAATCCGAAACCCTATATTCCAGGGCCAACGCTTCTCCAGAAGAAATATATTGATATATGATCTGGGTGGTGGCACATTTGACGTAGCCGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>349 230 142 130 49 43 26 20 11</canonical_bands>
                <polymorphic_bands>349 272 230 49 43 26 20 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATAGGACAACATGCAAAAGAC</pcr_primer_p1>
		<pcr_primer_p2>CTGTAACAGCTGAGAATTTGACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTATAGGACAACATGCAAAAGACGTGATCACAAAAGCAACAAGTTCACTTTTTGGTTAGCAACACAGACAAAAATAAATTCTCCTATTCTTTTTTAGATGTAAAACGAATAATCGGCAGACGGTTTGATGACGTTCTCCTTCAACGAGACATGCCTCTTTGGCCGTTTCGGGTTGAGAAGGATACCGATGGAACTCCCTATCTTCAAATTCAAAATGACGCTAAGAAAGTCAAATTCTCAGCTGTTACAG</canonical_amplicon>
		<polymorphic_amplicon>TTATAGGACAACATGCAAAAGACGTGATCACAAAAGCAACAAGTTCACTTTTTGGTTAGCAACACAGACAAAAATAAATTMTCCTATTCTTTTTTAGATGTAAAACGAATAATCGGCAGACGGTTTGATGACGTTCTCCTTCAACGAGACATGCCTCTTTGGCCGTTTCGGGTTGAGAAGGATACCGATGGAACTCCCTATCTTCAAATTCAAAATGACGCTAAGAAAGTCAAATTCTCAGCTGTTACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12985</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>248311</contig_pos>
        <strand>+</strand>
        <context>TCGGCAGACG[A/G]TTTGATGACR</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATAAATTCTCCTATTCTTTTTTAGATGTAAAACGAATAATCGGCAGACG</left_flank>
        <right_flank>TTTGATGACGTTCTCCTTCAACGAGACATGCCTCTTTGGCCGTTTCGGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTGATTTTTTTCAGCCGAATTCTTCGAAAATTCAATTTCTGACATTAAAATACTTTTTTCAAAACCGAAGAACTTGGAATTCTGATTTTCTGACGTTTTTAGAGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCCGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCCGGATACGAAATGTCGCGGCTGTGAAATGTCCGGATACGAAATGTCCGGGAGCCGTACTGGTTGAGTCTTAGACGGGAACAACTCCATTTTTTTTTCAAAAATTCAGATATTCAGGGTGTCGAACAACGCCGTCTGTGTTGGCTATGACTGAAGATGGGGATTGTCTTATAGGACAACATGCAAAAGACGTGATCACAAAAGCAACAAGTTCACTTTTTGGTTAGCAACACAGACAAAAATAAATTCTCCTATTCTTTTTTAGATGTAAAACGAATAATCGGCAGACGGTTTGATGACGTTCTCCTTCAACGAGACATGCCTCTTTGGCCGTTTCGGGTTGAGAAGGATACCGATGGAACTCCCTATCTTCAAATTCAAAATGACGCTAAGAAAGTCAAATTCTCAGCTGTTACAGTATCCTCCTTGATTCTGAAATGTCTCAAAGAGAATGCGGAGAGAAAGTTAGGTGTTGAAGTGAAAAGTGCAGTGATTACGGTACCTGCTTATTTCAATGCCACGCAACGGAGAGCAACGGAAGAAGCGGCTGAAATGGCTGGGTTGAAGGTGTTGAGGATTTTAAACGAACCAACGGCAGCGGCAATTGCTTATAGTTTGAAGGTCACTTATCTTTTTCAGATTATTAGGAATCGTAATAATCCGAAACCCTATATTCCAGGGCCAACGCTTCTCCAGAAGAAATATATTGATATATGATCTGGGTGGTGGCACATTTGACGTAGCCGTTGTCAATGTGGAAGGACCCAGGATTACTGTAAAGGCAAAAGGAG</canonical>
            <polymorphic>AAATTTGATTTTTTTCAGCCGAATTCTTCGAAAATTCAATTTCTGACATTAAAATACTTTTTTCAAAACCGAAGAACTTGGAATTCTGATTTTCTGACGTTTTTAGAGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCCGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCCGGATACGAAATGTCGCGGCTGTGAAATGTCCGGATACGAAATGTCCGGGAGCCGTACTGGTTGAGTCTTAGACGGGAACAACTCCATTTTTTTTTCAAAAATTCAGATATTCAGGGTGTCGAACAACGCCGTCTGTGTTGGCTATGACTGAAGATGGGGATTGTCTTATAGGACAACATGCAAAAGACGTGATCACAAAAGCAACAAGTTCACTTTTTGGTTAGCAACACAGACAAAAATAAATTCTCCTATTCTTTTTTAGATGTAAAACGAATAATCGGCAGACGRTTTGATGACGTTCTCCTTCAACGAGACATGCCTCTTTGGCCGTTTCGGGTTGAGAAGGATACCGATGGAACTCCCTATCTTCAAATTCAAAATGACGCTAAGAAAGTCAAATTCTCAGCTGTTACAGTATCCTCCTTGATTCTGAAATGTCTCAAAGAGAATGCGGAGAGAAAGTTAGGTGTTGAAGTGAAAAGTGCAGTGATTACGGTACCTGCTTATTTCAATGCCACGCAACGGAGAGCAACGGAAGAAGCGGCTGAAATGGCTGGGTTGAAGGTGTTGAGGATTTTAAACGAACCAACGGCAGCGGCAATTGCTTATAGTTTGAAGGTCACTTATCTTTTTCAGATTATTAGGAATCGTAATAATCCGAAACCCTATATTCCAGGGCCAACGCTTCTCCAGAAGAAATATATTGATATATGATCTGGGTGGTGGCACATTTGACGTAGCCGTTGTCAATGTGGAAGGACCCAGGATTACTGTAAAGGCAAAAGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>499 277 127 81 16</canonical_bands>
                <polymorphic_bands>626 277 81 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATAGGACAACATGCAAAAGAC</pcr_primer_p1>
		<pcr_primer_p2>CTGTAACAGCTGAGAATTTGACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTATAGGACAACATGCAAAAGACGTGATCACAAAAGCAACAAGTTCACTTTTTGGTTAGCAACACAGACAAAAATAAATTCTCCTATTCTTTTTTAGATGTAAAACGAATAATCGGCAGACGGTTTGATGACGTTCTCCTTCAACGAGACATGCCTCTTTGGCCGTTTCGGGTTGAGAAGGATACCGATGGAACTCCCTATCTTCAAATTCAAAATGACGCTAAGAAAGTCAAATTCTCAGCTGTTACAG</canonical_amplicon>
		<polymorphic_amplicon>TTATAGGACAACATGCAAAAGACGTGATCACAAAAGCAACAAGTTCACTTTTTGGTTAGCAACACAGACAAAAATAAATTCTCCTATTCTTTTTTAGATGTAAAACGAATAATCGGCAGACGRTTTGATGACGTTCTCCTTCAACGAGACATGCCTCTTTGGCCGTTTCGGGTTGAGAAGGATACCGATGGAACTCCCTATCTTCAAATTCAAAATGACGCTAAGAAAGTCAAATTCTCAGCTGTTACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12986</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>248321</contig_pos>
        <strand>+</strand>
        <context>RTTTGATGAC[A/G]TTCTCCTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTATTCTTTTTTAGATGTAAAACGAATAATCGGCAGACGGTTTGATGAC</left_flank>
        <right_flank>TTCTCCTTCAACGAGACATGCCTCTTTGGCCGTTTCGGGTTGAGAAGGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTCAGCCGAATTCTTCGAAAATTCAATTTCTGACATTAAAATACTTTTTTCAAAACCGAAGAACTTGGAATTCTGATTTTCTGACGTTTTTAGAGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCCGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCCGGATACGAAATGTCGCGGCTGTGAAATGTCCGGATACGAAATGTCCGGGAGCCGTACTGGTTGAGTCTTAGACGGGAACAACTCCATTTTTTTTTCAAAAATTCAGATATTCAGGGTGTCGAACAACGCCGTCTGTGTTGGCTATGACTGAAGATGGGGATTGTCTTATAGGACAACATGCAAAAGACGTGATCACAAAAGCAACAAGTTCACTTTTTGGTTAGCAACACAGACAAAAATAAATTCTCCTATTCTTTTTTAGATGTAAAACGAATAATCGGCAGACGGTTTGATGACGTTCTCCTTCAACGAGACATGCCTCTTTGGCCGTTTCGGGTTGAGAAGGATACCGATGGAACTCCCTATCTTCAAATTCAAAATGACGCTAAGAAAGTCAAATTCTCAGCTGTTACAGTATCCTCCTTGATTCTGAAATGTCTCAAAGAGAATGCGGAGAGAAAGTTAGGTGTTGAAGTGAAAAGTGCAGTGATTACGGTACCTGCTTATTTCAATGCCACGCAACGGAGAGCAACGGAAGAAGCGGCTGAAATGGCTGGGTTGAAGGTGTTGAGGATTTTAAACGAACCAACGGCAGCGGCAATTGCTTATAGTTTGAAGGTCACTTATCTTTTTCAGATTATTAGGAATCGTAATAATCCGAAACCCTATATTCCAGGGCCAACGCTTCTCCAGAAGAAATATATTGATATATGATCTGGGTGGTGGCACATTTGACGTAGCCGTTGTCAATGTGGAAGGACCCAGGATTACTGTAAAGGCAAAAGGAGGAGACACACA</canonical>
            <polymorphic>TTTTTCAGCCGAATTCTTCGAAAATTCAATTTCTGACATTAAAATACTTTTTTCAAAACCGAAGAACTTGGAATTCTGATTTTCTGACGTTTTTAGAGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCCGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCCGGATACGAAATGTCGCGGCTGTGAAATGTCCGGATACGAAATGTCCGGGAGCCGTACTGGTTGAGTCTTAGACGGGAACAACTCCATTTTTTTTTCAAAAATTCAGATATTCAGGGTGTCGAACAACGCCGTCTGTGTTGGCTATGACTGAAGATGGGGATTGTCTTATAGGACAACATGCAAAAGACGTGATCACAAAAGCAACAAGTTCACTTTTTGGTTAGCAACACAGACAAAAATAAATTCTCCTATTCTTTTTTAGATGTAAAACGAATAATCGGCAGACGGTTTGATGACRTTCTCCTTCAACGAGACATGCCTCTTTGGCCGTTTCGGGTTGAGAAGGATACCGATGGAACTCCCTATCTTCAAATTCAAAATGACGCTAAGAAAGTCAAATTCTCAGCTGTTACAGTATCCTCCTTGATTCTGAAATGTCTCAAAGAGAATGCGGAGAGAAAGTTAGGTGTTGAAGTGAAAAGTGCAGTGATTACGGTACCTGCTTATTTCAATGCCACGCAACGGAGAGCAACGGAAGAAGCGGCTGAAATGGCTGGGTTGAAGGTGTTGAGGATTTTAAACGAACCAACGGCAGCGGCAATTGCTTATAGTTTGAAGGTCACTTATCTTTTTCAGATTATTAGGAATCGTAATAATCCGAAACCCTATATTCCAGGGCCAACGCTTCTCCAGAAGAAATATATTGATATATGATCTGGGTGGTGGCACATTTGACGTAGCCGTTGTCAATGTGGAAGGACCCAGGATTACTGTAAAGGCAAAAGGAGGAGACACACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>439 302 109 87 63</canonical_bands>
                <polymorphic_bands>548 302 87 63</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATAGGACAACATGCAAAAGAC</pcr_primer_p1>
		<pcr_primer_p2>CTGTAACAGCTGAGAATTTGACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTATAGGACAACATGCAAAAGACGTGATCACAAAAGCAACAAGTTCACTTTTTGGTTAGCAACACAGACAAAAATAAATTCTCCTATTCTTTTTTAGATGTAAAACGAATAATCGGCAGACGGTTTGATGACGTTCTCCTTCAACGAGACATGCCTCTTTGGCCGTTTCGGGTTGAGAAGGATACCGATGGAACTCCCTATCTTCAAATTCAAAATGACGCTAAGAAAGTCAAATTCTCAGCTGTTACAG</canonical_amplicon>
		<polymorphic_amplicon>TTATAGGACAACATGCAAAAGACGTGATCACAAAAGCAACAAGTTCACTTTTTGGTTAGCAACACAGACAAAAATAAATTCTCCTATTCTTTTTTAGATGTAAAACGAATAATCGGCAGACGGTTTGATGACRTTCTCCTTCAACGAGACATGCCTCTTTGGCCGTTTCGGGTTGAGAAGGATACCGATGGAACTCCCTATCTTCAAATTCAAAATGACGCTAAGAAAGTCAAATTCTCAGCTGTTACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12987</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>250274</contig_pos>
        <strand>+</strand>
        <context>AGTTCGAACC[A/T]ACTGAAtgag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTACGGTTCCTGGAACAAAGTCACAGGGTACAGTAGTCGAGTTCGAACC</left_flank>
        <right_flank>ACTGAATGAGATTTCGAAATTTTAGAATTTAAGAATTTCGAAATTTTTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGCTATCACAACTACAATTGTATATGATCATTGTGCTTTTACACAGCCAGAAATAGACGAAATTACTAGCCAAAGTGAAGAGGATAGGTTATTTGATGAGACATTTAGATTACGGTACAAGCAATTGCAAAAAAGTGAAGATATGGCTTATGACTATAAACATCGGTTGGAGAAGATTAGGGTAAGACGAATTTAGCTGCTATCATCGCAAAAAGATATTTCTTTCAGGGCAGCGTTGATCGAGAAAAATATTCAAATCTTATGGAAACGGTTGAAAGGGAAATCTCATGGTTATCCGGGTTTCCGAAGGTTCCACCCAGTGATTACATCCATAGACGAAGAACATTACGAGTGAAAGTTTATCCGACATTATTTTTGAATCTGTCGTTTTACTAATTATTGATAAAACTGGTAGATTATTATTTGATAATGAACATTTTAAACAATTTGTACGGTTCCTGGAACAAAGTCACAGGGTACAGTAGTCGAGTTCGAACCAACTGAATGAGATTTCGAAATTTTAGAATTTAAGAATTTCGAAATTTTTTGAGCTTTTCAAATTTCGGAATTTAGGGTTCTAGAATTTTAGAATTTTCAAATTTCTCCGTTCCTGAATCTGAGAGTTTGTCAGTTTGGGAATTTGATTGTTTTTTCAGACTAACTAACTACTCACTTTTTCTTAAAAGGCCGTATTTTTGAAGGGTCGTATTCTATACGTATTTTTCAAGCTTTCAAAAGTCCACAGACCTTCATCAGTACAGACTTGCGTTCTTTATATAAGGAAGATTGGAAATATTTTTAGAGAAACAAAAATATTTGGTCGGAGTTCCCCTTTTCGTTAATTATTTGTTTCTCTATTAAAATTTTCTTCATCTTTCGGTTCGGAAAATTGAGCAACTTTTGAGAATCCAAGAACACAAGAATAAGGGACCATAAACTTTTTTTTTCGTCGTTTTCTCATTCTTCTTTTGCCTCCATTGTTCAAGAAACTAAACAACT</canonical>
            <polymorphic>AGGCTATCACAACTACAATTGTATATGATCATTGTGCTTTTACACAGCCAGAAATAGACGAAATTACTAGCCAAAGTGAAGAGGATAGGTTATTTGATGAGACATTTAGATTACGGTACAAGCAATTGCAAAAAAGTGAAGATATGGCTTATGACTATAAACATCGGTTGGAGAAGATTAGGGTAAGACGAATTTAGCTGCTATCATCGCAAAAAGATATTTCTTTCAGGGCAGCGTTGATCGAGAAAAATATTCAAATCTTATGGAAACGGTTGAAAGGGAAATCTCATGGTTATCCGGGTTTCCGAAGGTTCCACCCAGTGATTACATCCATAGACGAAGAACATTACGAGTGAAAGTTTATCCGACATTATTTTTGAATCTGTCGTTTTACTAATTATTGATAAAACTGGTAGATTATTATTTGATAATGAACATTTTAAACAATTTGTACGGTTCCTGGAACAAAGTCACAGGGTACAGTAGTCGAGTTCGAACCWACTGAATGAGATTTCGAAATTTTAGAATTTAAGAATTTCGAAATTTTTTGAGCTTTTCAAATTTCGGAATTTAGGGTTCTAGAATTTTAGAATTTTCAAATTTCTCCGTTCCTGAATCTGAGAGTTTGTCAGTTTGGGAATTTGATTGTTTTTTCAGACTAACTAACTACTCACTTTTTCTTAAAAGGCCGTATTTTTGAAGGGTCGTATTCTATACGTATTTTTCAAGCTTTCAAAAGTCCACAGACCTTCATCAGTACAGACTTGCGTTCTTTATATAAGGAAGATTGGAAATATTTTTAGAGAAACAAAAATATTTGGTCGGAGTTCCCCTTTTCGTTAATTATTTGTTTCTCTATTAAAATTTTCTTCATCTTTCGGTTCGGAAAATTGAGCAACTTTTGAGAATCCAAGAACACAAGAATAAGGGACCATAAACTTTTTTTTTCGTCGTTTTCTCATTCTTCTTTTGCCTCCATTGTTCAAGAAACTAAACAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAAACAATTTGTACGGTTCC</pcr_primer_p1>
		<pcr_primer_p2>GGCCTTTTAAGAAAAAGTGAGTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTAAACAATTTGTACGGTTCCTGGAACAAAGTCACAGGGTACAGTAGTCGAGTTCGAACCAACTGAATGAGATTTCGAAATTTTAGAATTTAAGAATTTCGAAATTTTTTGAGCTTTTCAAATTTCGGAATTTAGGGTTCTAGAATTTTAGAATTTTCAAATTTCTCCGTTCCTGAATCTGAGAGTTTGTCAGTTTGGGAATTTGATTGTTTTTTCAGACTAACTAACTACTCACTTTTTCTTAAAAGGCC</canonical_amplicon>
		<polymorphic_amplicon>TTTAAACAATTTGTACGGTTCCTGGAACAAAGTCACAGGGTACAGTAGTCGAGTTCGAACCWACTGAATGAGATTTCGAAATTTTAGAATTTAAGAATTTCGAAATTTTTTGAGCTTTTCAAATTTCGGAATTTAGGGTTCTAGAATTTTAGAATTTTCAAATTTCTCCGTTCCTGAATCTGAGAGTTTGTCAGTTTGGGAATTTGATTGTTTTTTCAGACTAACTAACTACTCACTTTTTCTTAAAAGGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12988</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>250156</contig_pos>
        <strand>+</strand>
        <context>TATTTTTGAA[A/T]CTGTCGTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATAGACGAAGAACATTACGAGTGAAAGTTTATCCGACATTATTTTTGAA</left_flank>
        <right_flank>CTGTCGTTTTACTAATTATTGATAAAACTGGTAGATTATTATTTGATAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGGAAATCAGTCTTCCAATCCATCCAAAGAAACGTGGCGAATCTGTTGTAGACATCACTTTGGAAGTAGATCACAATGGAATCCTCCAAGCGACTGCGTTGGATCTAAACACCAAAAAGGCTATCACAACTACAATTGTATATGATCATTGTGCTTTTACACAGCCAGAAATAGACGAAATTACTAGCCAAAGTGAAGAGGATAGGTTATTTGATGAGACATTTAGATTACGGTACAAGCAATTGCAAAAAAGTGAAGATATGGCTTATGACTATAAACATCGGTTGGAGAAGATTAGGGTAAGACGAATTTAGCTGCTATCATCGCAAAAAGATATTTCTTTCAGGGCAGCGTTGATCGAGAAAAATATTCAAATCTTATGGAAACGGTTGAAAGGGAAATCTCATGGTTATCCGGGTTTCCGAAGGTTCCACCCAGTGATTACATCCATAGACGAAGAACATTACGAGTGAAAGTTTATCCGACATTATTTTTGAATCTGTCGTTTTACTAATTATTGATAAAACTGGTAGATTATTATTTGATAATGAACATTTTAAACAATTTGTACGGTTCCTGGAACAAAGTCACAGGGTACAGTAGTCGAGTTCGAACCAACTGAATGAGATTTCGAAATTTTAGAATTTAAGAATTTCGAAATTTTTTGAGCTTTTCAAATTTCGGAATTTAGGGTTCTAGAATTTTAGAATTTTCAAATTTCTCCGTTCCTGAATCTGAGAGTTTGTCAGTTTGGGAATTTGATTGTTTTTTCAGACTAACTAACTACTCACTTTTTCTTAAAAGGCCGTATTTTTGAAGGGTCGTATTCTATACGTATTTTTCAAGCTTTCAAAAGTCCACAGACCTTCATCAGTACAGACTTGCGTTCTTTATATAAGGAAGATTGGAAATATTTTTAGAGAAACAAAAATATTTGGTCGGAGTTCCCCTTTTCGTTAATTATTTGTTTCTCTATTAAAATTTTCTTCATCTTTCGGT</canonical>
            <polymorphic>GGGGAAATCAGTCTTCCAATCCATCCAAAGAAACGTGGCGAATCTGTTGTAGACATCACTTTGGAAGTAGATCACAATGGAATCCTCCAAGCGACTGCGTTGGATCTAAACACCAAAAAGGCTATCACAACTACAATTGTATATGATCATTGTGCTTTTACACAGCCAGAAATAGACGAAATTACTAGCCAAAGTGAAGAGGATAGGTTATTTGATGAGACATTTAGATTACGGTACAAGCAATTGCAAAAAAGTGAAGATATGGCTTATGACTATAAACATCGGTTGGAGAAGATTAGGGTAAGACGAATTTAGCTGCTATCATCGCAAAAAGATATTTCTTTCAGGGCAGCGTTGATCGAGAAAAATATTCAAATCTTATGGAAACGGTTGAAAGGGAAATCTCATGGTTATCCGGGTTTCCGAAGGTTCCACCCAGTGATTACATCCATAGACGAAGAACATTACGAGTGAAAGTTTATCCGACATTATTTTTGAAWCTGTCGTTTTACTAATTATTGATAAAACTGGTAGATTATTATTTGATAATGAACATTTTAAACAATTTGTACGGTTCCTGGAACAAAGTCACAGGGTACAGTAGTCGAGTTCGAACCAACTGAATGAGATTTCGAAATTTTAGAATTTAAGAATTTCGAAATTTTTTGAGCTTTTCAAATTTCGGAATTTAGGGTTCTAGAATTTTAGAATTTTCAAATTTCTCCGTTCCTGAATCTGAGAGTTTGTCAGTTTGGGAATTTGATTGTTTTTTCAGACTAACTAACTACTCACTTTTTCTTAAAAGGCCGTATTTTTGAAGGGTCGTATTCTATACGTATTTTTCAAGCTTTCAAAAGTCCACAGACCTTCATCAGTACAGACTTGCGTTCTTTATATAAGGAAGATTGGAAATATTTTTAGAGAAACAAAAATATTTGGTCGGAGTTCCCCTTTTCGTTAATTATTTGTTTCTCTATTAAAATTTTCTTCATCTTTCGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>417 268 235 40 40</canonical_bands>
                <polymorphic_bands>652 268 40 40</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>417 268 235 40 40</canonical_bands>
                <polymorphic_bands>652 268 40 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATCGAGAAAAATATTCAAATC</pcr_primer_p1>
		<pcr_primer_p2>CTACTGTACCCTGTGACTTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGATCGAGAAAAATATTCAAATCTTATGGAAACGGTTGAAAGGGAAATCTCATGGTTATCCGGGTTTCCGAAGGTTCCACCCAGTGATTACATCCATAGACGAAGAACATTACGAGTGAAAGTTTATCCGACATTATTTTTGAATCTGTCGTTTTACTAATTATTGATAAAACTGGTAGATTATTATTTGATAATGAACATTTTAAACAATTTGTACGGTTCCTGGAACAAAGTCACAGGGTACAGTAG</canonical_amplicon>
		<polymorphic_amplicon>TGATCGAGAAAAATATTCAAATCTTATGGAAACGGTTGAAAGGGAAATCTCATGGTTATCCGGGTTTCCGAAGGTTCCACCCAGTGATTACATCCATAGACGAAGAACATTACGAGTGAAAGTTTATCCGACATTATTTTTGAAWCTGTCGTTTTACTAATTATTGATAAAACTGGTAGATTATTATTTGATAATGAACATTTTAAACAATTTGTACGGTTCCTGGAACAAAGTCACAGGGTACAGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12989</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>250141</contig_pos>
        <strand>+</strand>
        <context>AAGTTTATCC[C/G]ACATTATTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCCAGTGATTACATCCATAGACGAAGAACATTACGAGTGAAAGTTTATCC</left_flank>
        <right_flank>ACATTATTTTTGAATCTGTCGTTTTACTAATTATTGATAAAACTGGTAGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATAATCGCCAACTCGGGGAAATCAGTCTTCCAATCCATCCAAAGAAACGTGGCGAATCTGTTGTAGACATCACTTTGGAAGTAGATCACAATGGAATCCTCCAAGCGACTGCGTTGGATCTAAACACCAAAAAGGCTATCACAACTACAATTGTATATGATCATTGTGCTTTTACACAGCCAGAAATAGACGAAATTACTAGCCAAAGTGAAGAGGATAGGTTATTTGATGAGACATTTAGATTACGGTACAAGCAATTGCAAAAAAGTGAAGATATGGCTTATGACTATAAACATCGGTTGGAGAAGATTAGGGTAAGACGAATTTAGCTGCTATCATCGCAAAAAGATATTTCTTTCAGGGCAGCGTTGATCGAGAAAAATATTCAAATCTTATGGAAACGGTTGAAAGGGAAATCTCATGGTTATCCGGGTTTCCGAAGGTTCCACCCAGTGATTACATCCATAGACGAAGAACATTACGAGTGAAAGTTTATCCGACATTATTTTTGAATCTGTCGTTTTACTAATTATTGATAAAACTGGTAGATTATTATTTGATAATGAACATTTTAAACAATTTGTACGGTTCCTGGAACAAAGTCACAGGGTACAGTAGTCGAGTTCGAACCAACTGAATGAGATTTCGAAATTTTAGAATTTAAGAATTTCGAAATTTTTTGAGCTTTTCAAATTTCGGAATTTAGGGTTCTAGAATTTTAGAATTTTCAAATTTCTCCGTTCCTGAATCTGAGAGTTTGTCAGTTTGGGAATTTGATTGTTTTTTCAGACTAACTAACTACTCACTTTTTCTTAAAAGGCCGTATTTTTGAAGGGTCGTATTCTATACGTATTTTTCAAGCTTTCAAAAGTCCACAGACCTTCATCAGTACAGACTTGCGTTCTTTATATAAGGAAGATTGGAAATATTTTTAGAGAAACAAAAATATTTGGTCGGAGTTCCCCTTTTCGTTAATTATTTGTTTCTCTATTAAAATTT</canonical>
            <polymorphic>CATAATCGCCAACTCGGGGAAATCAGTCTTCCAATCCATCCAAAGAAACGTGGCGAATCTGTTGTAGACATCACTTTGGAAGTAGATCACAATGGAATCCTCCAAGCGACTGCGTTGGATCTAAACACCAAAAAGGCTATCACAACTACAATTGTATATGATCATTGTGCTTTTACACAGCCAGAAATAGACGAAATTACTAGCCAAAGTGAAGAGGATAGGTTATTTGATGAGACATTTAGATTACGGTACAAGCAATTGCAAAAAAGTGAAGATATGGCTTATGACTATAAACATCGGTTGGAGAAGATTAGGGTAAGACGAATTTAGCTGCTATCATCGCAAAAAGATATTTCTTTCAGGGCAGCGTTGATCGAGAAAAATATTCAAATCTTATGGAAACGGTTGAAAGGGAAATCTCATGGTTATCCGGGTTTCCGAAGGTTCCACCCAGTGATTACATCCATAGACGAAGAACATTACGAGTGAAAGTTTATCCSACATTATTTTTGAATCTGTCGTTTTACTAATTATTGATAAAACTGGTAGATTATTATTTGATAATGAACATTTTAAACAATTTGTACGGTTCCTGGAACAAAGTCACAGGGTACAGTAGTCGAGTTCGAACCAACTGAATGAGATTTCGAAATTTTAGAATTTAAGAATTTCGAAATTTTTTGAGCTTTTCAAATTTCGGAATTTAGGGTTCTAGAATTTTAGAATTTTCAAATTTCTCCGTTCCTGAATCTGAGAGTTTGTCAGTTTGGGAATTTGATTGTTTTTTCAGACTAACTAACTACTCACTTTTTCTTAAAAGGCCGTATTTTTGAAGGGTCGTATTCTATACGTATTTTTCAAGCTTTCAAAAGTCCACAGACCTTCATCAGTACAGACTTGCGTTCTTTATATAAGGAAGATTGGAAATATTTTTAGAGAAACAAAAATATTTGGTCGGAGTTCCCCTTTTCGTTAATTATTTGTTTCTCTATTAAAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>439 200 168 60 53 43 37</canonical_bands>
                <polymorphic_bands>439 260 168 53 43 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATCGAGAAAAATATTCAAATC</pcr_primer_p1>
		<pcr_primer_p2>CTACTGTACCCTGTGACTTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGATCGAGAAAAATATTCAAATCTTATGGAAACGGTTGAAAGGGAAATCTCATGGTTATCCGGGTTTCCGAAGGTTCCACCCAGTGATTACATCCATAGACGAAGAACATTACGAGTGAAAGTTTATCCGACATTATTTTTGAATCTGTCGTTTTACTAATTATTGATAAAACTGGTAGATTATTATTTGATAATGAACATTTTAAACAATTTGTACGGTTCCTGGAACAAAGTCACAGGGTACAGTAG</canonical_amplicon>
		<polymorphic_amplicon>TGATCGAGAAAAATATTCAAATCTTATGGAAACGGTTGAAAGGGAAATCTCATGGTTATCCGGGTTTCCGAAGGTTCCACCCAGTGATTACATCCATAGACGAAGAACATTACGAGTGAAAGTTTATCCSACATTATTTTTGAATCTGTCGTTTTACTAATTATTGATAAAACTGGTAGATTATTATTTGATAATGAACATTTTAAACAATTTGTACGGTTCCTGGAACAAAGTCACAGGGTACAGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12990</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>249992</contig_pos>
        <strand>+</strand>
        <context>CGCAAAAAGA[C/T]ATTTCTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGAGAAGATTAGGGTAAGACGAATTTAGCTGCTATCATCGCAAAAAGA</left_flank>
        <right_flank>ATTTCTTTCAGGGCAGCGTTGATCGAGAAAAATATTCAAATCTTATGGAA</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATTTCCATGCTTCAAAAAGAAGACGTTCATCAATAGTGAAGATTTTCAAACACTCATTAATGTGCCAGTCTATGAAGGTTGGAACAGTTCTGAAGCTTTTTATCTTATCACCTGAAACGATTTCCAGGCGAAAGAGTCCTGTGCTCCCATAATCGCCAACTCGGGGAAATCAGTCTTCCAATCCATCCAAAGAAACGTGGCGAATCTGTTGTAGACATCACTTTGGAAGTAGATCACAATGGAATCCTCCAAGCGACTGCGTTGGATCTAAACACCAAAAAGGCTATCACAACTACAATTGTATATGATCATTGTGCTTTTACACAGCCAGAAATAGACGAAATTACTAGCCAAAGTGAAGAGGATAGGTTATTTGATGAGACATTTAGATTACGGTACAAGCAATTGCAAAAAAGTGAAGATATGGCTTATGACTATAAACATCGGTTGGAGAAGATTAGGGTAAGACGAATTTAGCTGCTATCATCGCAAAAAGATATTTCTTTCAGGGCAGCGTTGATCGAGAAAAATATTCAAATCTTATGGAAACGGTTGAAAGGGAAATCTCATGGTTATCCGGGTTTCCGAAGGTTCCACCCAGTGATTACATCCATAGACGAAGAACATTACGAGTGAAAGTTTATCCGACATTATTTTTGAATCTGTCGTTTTACTAATTATTGATAAAACTGGTAGATTATTATTTGATAATGAACATTTTAAACAATTTGTACGGTTCCTGGAACAAAGTCACAGGGTACAGTAGTCGAGTTCGAACCAACTGAATGAGATTTCGAAATTTTAGAATTTAAGAATTTCGAAATTTTTTGAGCTTTTCAAATTTCGGAATTTAGGGTTCTAGAATTTTAGAATTTTCAAATTTCTCCGTTCCTGAATCTGAGAGTTTGTCAGTTTGGGAATTTGATTGTTTTTTCAGACTAACTAACTACTCACTTTTTCTTAAAAGGCCGTATTTTTGAAGGGTCGTATTCTATACG</canonical>
            <polymorphic>GTATTTCCATGCTTCAAAAAGAAGACGTTCATCAATAGTGAAGATTTTCAAACACTCATTAATGTGCCAGTCTATGAAGGTTGGAACAGTTCTGAAGCTTTTTATCTTATCACCTGAAACGATTTCCAGGCGAAAGAGTCCTGTGCTCCCATAATCGCCAACTCGGGGAAATCAGTCTTCCAATCCATCCAAAGAAACGTGGCGAATCTGTTGTAGACATCACTTTGGAAGTAGATCACAATGGAATCCTCCAAGCGACTGCGTTGGATCTAAACACCAAAAAGGCTATCACAACTACAATTGTATATGATCATTGTGCTTTTACACAGCCAGAAATAGACGAAATTACTAGCCAAAGTGAAGAGGATAGGTTATTTGATGAGACATTTAGATTACGGTACAAGCAATTGCAAAAAAGTGAAGATATGGCTTATGACTATAAACATCGGTTGGAGAAGATTAGGGTAAGACGAATTTAGCTGCTATCATCGCAAAAAGAYATTTCTTTCAGGGCAGCGTTGATCGAGAAAAATATTCAAATCTTATGGAAACGGTTGAAAGGGAAATCTCATGGTTATCCGGGTTTCCGAAGGTTCCACCCAGTGATTACATCCATAGACGAAGAACATTACGAGTGAAAGTTTATCCGACATTATTTTTGAATCTGTCGTTTTACTAATTATTGATAAAACTGGTAGATTATTATTTGATAATGAACATTTTAAACAATTTGTACGGTTCCTGGAACAAAGTCACAGGGTACAGTAGTCGAGTTCGAACCAACTGAATGAGATTTCGAAATTTTAGAATTTAAGAATTTCGAAATTTTTTGAGCTTTTCAAATTTCGGAATTTAGGGTTCTAGAATTTTAGAATTTTCAAATTTCTCCGTTCCTGAATCTGAGAGTTTGTCAGTTTGGGAATTTGATTGTTTTTTCAGACTAACTAACTACTCACTTTTTCTTAAAAGGCCGTATTTTTGAAGGGTCGTATTCTATACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGACATTTAGATTACGGTACAA</pcr_primer_p1>
		<pcr_primer_p2>TGTTCTTCGTCTATGGATGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAGACATTTAGATTACGGTACAAGCAATTGCAAAAAAGTGAAGATATGGCTTATGACTATAAACATCGGTTGGAGAAGATTAGGGTAAGACGAATTTAGCTGCTATCATCGCAAAAAGATATTTCTTTCAGGGCAGCGTTGATCGAGAAAAATATTCAAATCTTATGGAAACGGTTGAAAGGGAAATCTCATGGTTATCCGGGTTTCCGAAGGTTCCACCCAGTGATTACATCCATAGACGAAGAACA</canonical_amplicon>
		<polymorphic_amplicon>TGAGACATTTAGATTACGGTACAAGCAATTGCAAAAAAGTGAAGATATGGCTTATGACTATAAACATCGGTTGGAGAAGATTAGGGTAAGACGAATTTAGCTGCTATCATCGCAAAAAGAYATTTCTTTCAGGGCAGCGTTGATCGAGAAAAATATTCAAATCTTATGGAAACGGTTGAAAGGGAAATCTCATGGTTATCCGGGTTTCCGAAGGTTCCACCCAGTGATTACATCCATAGACGAAGAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12991</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>265844</contig_pos>
        <strand>+</strand>
        <context>CAGTCTTTCT[C/T]CTTTCAAGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTGATAATCTTTTTCTATTCTGTTAAACATGTCCTTTTCAGTCTTTCT</left_flank>
        <right_flank>CTTTCAAGGTTAATTTTTGGTCTTCTGCAACATAGTACACCGAAAGGGCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGAAGCAAATAAAACATCGTACACAATTCTGCGGCACCTCTCCCCGCCATTGTTGCCCATCCCTCTACCACATAATTACTGACCTGGTGTCCTTCTAACCCGCTTTTTTGACGTATGTGTCTCTCCGTCTTTCCGTTGGATGTCCGTTTTTCCCTCCCACCCCCTTTCATCCATCCACTTTTCTCCACACTCGAAGCCCTCTTCAAATCCAACGGTGTCTCCCTCGTGGTGGCGTAGCGGACGAGCGCTGACCCGAACACCCTCGCGTTCAGTGAACGCACATATGGCGCAGTATTCCACTTTGCCACTGGGTGAAACCTTTCTTCTGTGTAGTTTCTATGATTCATTATGCTAGCAAAAATGATTTTCAAAAGATTTTTCTAAAATATTCACATTCCTAGTTCTATCCGATCATAATCACTGTTTAGTCTTTTTGATCCAGCCTTGATTTGATAATCTTTTTCTATTCTGTTAAACATGTCCTTTTCAGTCTTTCTCCTTTCAAGGTTAATTTTTGGTCTTCTGCAACATAGTACACCGAAAGGGCAGTGGCACTCGGTCTGGAATATTTTATCCTCGTGGCACGAAAGTGCACAATTAGTCATACACTTCCTGCTCATTTTCCAGCTGCTCATTTCTCTTCAGCAGTCTGAATATATATTCCATTCCTTCCATTCGATCACTCTTATCAATTACAAATTAGATCAGATGGCTGTGTCTGTTCAGAGATAAGAAGTCAAGGCCACTCATATGGGGGTCATTCATCTAAATTGACATGTTAGATTCTGAACGTCCGGATGTCCTTCTTCCCAGCCGATAACATCTCAGTTCTTGCCATCTCGACTGTCATTTGTTCATCAGCTGTCCACTATTCCCACTCTCCCCCACCACCCACCACCCTTTCCCGCAGTGCTTTGTTTGGTATGAGAGACTGCCAGCTGGTTGAAAAGCGAGTCTTTTGTATCCTATGTCTCTCTTACTCTCTTTGCTTTTCCACA</canonical>
            <polymorphic>CCTGAAGCAAATAAAACATCGTACACAATTCTGCGGCACCTCTCCCCGCCATTGTTGCCCATCCCTCTACCACATAATTACTGACCTGGTGTCCTTCTAACCCGCTTTTTTGACGTATGTGTCTCTCCGTCTTTCCGTTGGATGTCCGTTTTTCCCTCCCACCCCCTTTCATCCATCCACTTTTCTCCACACTCGAAGCCCTCTTCAAATCCAACGGTGTCTCCCTCGTGGTGGCGTAGCGGACGAGCGCTGACCCGAACACCCTCGCGTTCAGTGAACGCACATATGGCGCAGTATTCCACTTTGCCACTGGGTGAAACCTTTCTTCTGTGTAGTTTCTATGATTCATTATGCTAGCAAAAATGATTTTCAAAAGATTTTTCTAAAATATTCACATTCCTAGTTCTATCCGATCATAATCACTGTTTAGTCTTTTTGATCCAGCCTTGATTTGATAATCTTTTTCTATTCTGTTAAACATGTCCTTTTCAGTCTTTCTYCTTTCAAGGTTAATTTTTGGTCTTCTGCAACATAGTACACCGAAAGGGCAGTGGCACTCGGTCTGGAATATTTTATCCTCGTGGCACGAAAGTGCACAATTAGTCATACACTTCCTGCTCATTTTCCAGCTGCTCATTTCTCTTCAGCAGTCTGAATATATATTCCATTCCTTCCATTCGATCACTCTTATCAATTACAAATTAGATCAGATGGCTGTGTCTGTTCAGAGATAAGAAGTCAAGGCCACTCATATGGGGGTCATTCATCTAAATTGACATGTTAGATTCTGAACGTCCGGATGTCCTTCTTCCCAGCCGATAACATCTCAGTTCTTGCCATCTCGACTGTCATTTGTTCATCAGCTGTCCACTATTCCCACTCTCCCCCACCACCCACCACCCTTTCCCGCAGTGCTTTGTTTGGTATGAGAGACTGCCAGCTGGTTGAAAAGCGAGTCTTTTGTATCCTATGTCTCTCTTACTCTCTTTGCTTTTCCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCACTGTTTAGTCTTTTTGATCC</pcr_primer_p1>
		<pcr_primer_p2>ATATTCAGACTGCTGAAGAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TCACTGTTTAGTCTTTTTGATCCAGCCTTGATTTGATAATCTTTTTCTATTCTGTTAAACATGTCCTTTTCAGTCTTTCTCCTTTCAAGGTTAATTTTTGGTCTTCTGCAACATAGTACACCGAAAGGGCAGTGGCACTCGGTCTGGAATATTTTATCCTCGTGGCACGAAAGTGCACAATTAGTCATACACTTCCTGCTCATTTTCCAGCTGCTCATTTCTCTTCAGCAGTCTGAATAT</canonical_amplicon>
		<polymorphic_amplicon>TCACTGTTTAGTCTTTTTGATCCAGCCTTGATTTGATAATCTTTTTCTATTCTGTTAAACATGTCCTTTTCAGTCTTTCTYCTTTCAAGGTTAATTTTTGGTCTTCTGCAACATAGTACACCGAAAGGGCAGTGGCACTCGGTCTGGAATATTTTATCCTCGTGGCACGAAAGTGCACAATTAGTCATACACTTCCTGCTCATTTTCCAGCTGCTCATTTCTCTTCAGCAGTCTGAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12992</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>265926</contig_pos>
        <strand>+</strand>
        <context>TTTATCCTCG[C/T]GGCACGAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAGTACACCGAAAGGGCAGTGGCACTCGGTCTGGAATATTTTATCCTCG</left_flank>
        <right_flank>GGCACGAAAGTGCACAATTAGTCATACACTTCCTGCTCATTTTCCAGCTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACCTGGTGTCCTTCTAACCCGCTTTTTTGACGTATGTGTCTCTCCGTCTTTCCGTTGGATGTCCGTTTTTCCCTCCCACCCCCTTTCATCCATCCACTTTTCTCCACACTCGAAGCCCTCTTCAAATCCAACGGTGTCTCCCTCGTGGTGGCGTAGCGGACGAGCGCTGACCCGAACACCCTCGCGTTCAGTGAACGCACATATGGCGCAGTATTCCACTTTGCCACTGGGTGAAACCTTTCTTCTGTGTAGTTTCTATGATTCATTATGCTAGCAAAAATGATTTTCAAAAGATTTTTCTAAAATATTCACATTCCTAGTTCTATCCGATCATAATCACTGTTTAGTCTTTTTGATCCAGCCTTGATTTGATAATCTTTTTCTATTCTGTTAAACATGTCCTTTTCAGTCTTTCTCCTTTCAAGGTTAATTTTTGGTCTTCTGCAACATAGTACACCGAAAGGGCAGTGGCACTCGGTCTGGAATATTTTATCCTCGTGGCACGAAAGTGCACAATTAGTCATACACTTCCTGCTCATTTTCCAGCTGCTCATTTCTCTTCAGCAGTCTGAATATATATTCCATTCCTTCCATTCGATCACTCTTATCAATTACAAATTAGATCAGATGGCTGTGTCTGTTCAGAGATAAGAAGTCAAGGCCACTCATATGGGGGTCATTCATCTAAATTGACATGTTAGATTCTGAACGTCCGGATGTCCTTCTTCCCAGCCGATAACATCTCAGTTCTTGCCATCTCGACTGTCATTTGTTCATCAGCTGTCCACTATTCCCACTCTCCCCCACCACCCACCACCCTTTCCCGCAGTGCTTTGTTTGGTATGAGAGACTGCCAGCTGGTTGAAAAGCGAGTCTTTTGTATCCTATGTCTCTCTTACTCTCTTTGCTTTTCCACACGTACGACGATCGTCATTCCCATCTTGTCATTTCCATTCTCCATAATTAAGAAGAGATTTTAATGTAGGCCTTCTTTTTTCA</canonical>
            <polymorphic>GACCTGGTGTCCTTCTAACCCGCTTTTTTGACGTATGTGTCTCTCCGTCTTTCCGTTGGATGTCCGTTTTTCCCTCCCACCCCCTTTCATCCATCCACTTTTCTCCACACTCGAAGCCCTCTTCAAATCCAACGGTGTCTCCCTCGTGGTGGCGTAGCGGACGAGCGCTGACCCGAACACCCTCGCGTTCAGTGAACGCACATATGGCGCAGTATTCCACTTTGCCACTGGGTGAAACCTTTCTTCTGTGTAGTTTCTATGATTCATTATGCTAGCAAAAATGATTTTCAAAAGATTTTTCTAAAATATTCACATTCCTAGTTCTATCCGATCATAATCACTGTTTAGTCTTTTTGATCCAGCCTTGATTTGATAATCTTTTTCTATTCTGTTAAACATGTCCTTTTCAGTCTTTCTCCTTTCAAGGTTAATTTTTGGTCTTCTGCAACATAGTACACCGAAAGGGCAGTGGCACTCGGTCTGGAATATTTTATCCTCGYGGCACGAAAGTGCACAATTAGTCATACACTTCCTGCTCATTTTCCAGCTGCTCATTTCTCTTCAGCAGTCTGAATATATATTCCATTCCTTCCATTCGATCACTCTTATCAATTACAAATTAGATCAGATGGCTGTGTCTGTTCAGAGATAAGAAGTCAAGGCCACTCATATGGGGGTCATTCATCTAAATTGACATGTTAGATTCTGAACGTCCGGATGTCCTTCTTCCCAGCCGATAACATCTCAGTTCTTGCCATCTCGACTGTCATTTGTTCATCAGCTGTCCACTATTCCCACTCTCCCCCACCACCCACCACCCTTTCCCGCAGTGCTTTGTTTGGTATGAGAGACTGCCAGCTGGTTGAAAAGCGAGTCTTTTGTATCCTATGTCTCTCTTACTCTCTTTGCTTTTCCACACGTACGACGATCGTCATTCCCATCTTGTCATTTCCATTCTCCATAATTAAGAAGAGATTTTAATGTAGGCCTTCTTTTTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>123 117 84 82 74 62 40 35 30 28 28 28 28 27 19 18 16 15 15 14 14 11 10 10 9 9 8 8 7 6 4 3 3 3 3 3 2 2 2</canonical_bands>
                <polymorphic_bands>123 117 84 82 74 62 40 35 30 30 28 28 28 28 19 18 16 15 15 14 14 11 10 10 9 9 8 8 7 6 4 3 3 3 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTTAAACATGTCCTTTTCAGT</pcr_primer_p1>
		<pcr_primer_p2>ACAGCCATCTGATCTAATTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTGTTAAACATGTCCTTTTCAGTCTTTCTCCTTTCAAGGTTAATTTTTGGTCTTCTGCAACATAGTACACCGAAAGGGCAGTGGCACTCGGTCTGGAATATTTTATCCTCGTGGCACGAAAGTGCACAATTAGTCATACACTTCCTGCTCATTTTCCAGCTGCTCATTTCTCTTCAGCAGTCTGAATATATATTCCATTCCTTCCATTCGATCACTCTTATCAATTACAAATTAGATCAGATGGCTGT</canonical_amplicon>
		<polymorphic_amplicon>CTGTTAAACATGTCCTTTTCAGTCTTTCTCCTTTCAAGGTTAATTTTTGGTCTTCTGCAACATAGTACACCGAAAGGGCAGTGGCACTCGGTCTGGAATATTTTATCCTCGYGGCACGAAAGTGCACAATTAGTCATACACTTCCTGCTCATTTTCCAGCTGCTCATTTCTCTTCAGCAGTCTGAATATATATTCCATTCCTTCCATTCGATCACTCTTATCAATTACAAATTAGATCAGATGGCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12993</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>313401</contig_pos>
        <strand>+</strand>
        <context>TAATGGAAAA[C/G]TTGGATAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTTAGTAGTTGTCTGGAGGAAAATCATCAGACTTCATTTATAATGGAAAA</left_flank>
        <right_flank>TTGGATAATTTTCTCGCTTTAAACCCTGCATAGTTCAAGTTTCTTAACAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTTCTGTCAAACCGCGACTAGCTCATAATTACTAGTGATGATCTAAATATGTAAGATCACTAAAAATCGTCATGAAGGAAAAGTACAAAATGTGGGTAGAAAATCAGAAATAGGTCGTGATGACATAAACAACAAAAAAGGTATACGGTAAGAGAGCCAGATATCGAAGGAAGTAATACAGAATTCTATGTGAGTTATGAAAACTGGGGTCAGTAACTATTGAGATTACCGTAAACACTCTAATAGAGACCTCCACTTGCACTTTGAGCTCAATCAGTCTCGGGATAAATTTCCGATGTCTTGCAAGGGAGTTTAGATAATGGAGCTCAAACTTGACAATGGTGCCCTTCTATTACAGATTTTACGGTATGTGAAATGTTATCAGACACAATTCAGACAGTTTCAAAATATCATTTTAGAAACCAAGATAATTAAGGTCATAGGAGGTTAGTAGTTGTCTGGAGGAAAATCATCAGACTTCATTTATAATGGAAAAGTTGGATAATTTTCTCGCTTTAAACCCTGCATAGTTCAAGTTTCTTAACAGTAAAAAAGTAATACCCGCAAAACCCTTTTTTCGGAAAGAAAGCGAAACATTCAAAAATTCAAAAATCACAATATTCTCATTCTATTAAATTTTAGAACCCTATTTCTCGTTTTAGCCACGCCCCCAGGAGTTCACTGTAACCAAATGCTACATTTTCAGTCGAAAATCCACAGAAATAGTACATTTCGTATATTTTATTAAATGGAACTACAACAATGAAAACAAATTATTCCCTGCACTTTCCTAGCAATCTAATGGAAAAGGGATATTCTGATATCGTCTTCCTATATCAAATTTCGGATAAAATCATATCTAAAGTTAAAACATATGTTTTCTGAATGAATTGAGAGGTAAAAACAAGCAAGAAAAGTTTTTTTCGGATCTCTGAAGTGGTCCATTCTCCGCTGAAAGTATCAAAAAGAAGTACCGTAATCACTCTATTACATAGAA</canonical>
            <polymorphic>AAACTTCTGTCAAACCGCGACTAGCTCATAATTACTAGTGATGATCTAAATATGTAAGATCACTAAAAATCGTCATGAAGGAAAAGTACAAAATGTGGGTAGAAAATCAGAAATAGGTCGTGATGACATAAACAACAAAAAAGGTATACGGTAAGAGAGCCAGATATCGAAGGAAGTAATACAGAATTCTATGTGAGTTATGAAAACTGGGGTCAGTAACTATTGAGATTACCGTAAACACTCTAATAGAGACCTCCACTTGCACTTTGAGCTCAATCAGTCTCGGGATAAATTTCCGATGTCTTGCAAGGGAGTTTAGATAATGGAGCTCAAACTTGACAATGGTGCCCTTCTATTACAGATTTTACGGTATGTGAAATGTTATCAGACACAATTCAGACAGTTTCAAAATATCATTTTAGAAACCAAGATAATTAAGGTCATAGGAGGTTAGTAGTTGTCTGGAGGAAAATCATCAGACTTCATTTATAATGGAAAASTTGGATAATTTTCTCGCTTTAAACCCTGCATAGTTCAAGTTTCTTAACAGTAAAAAAGTAATACCCGCAAAACCCTTTTTTCGGAAAGAAAGCGAAACATTCAAAAATTCAAAAATCACAATATTCTCATTCTATTAAATTTTAGAACCCTATTTCTCGTTTTAGCCACGCCCCCAGGAGTTCACTGTAACCAAATGCTACATTTTCAGTCGAAAATCCACAGAAATAGTACATTTCGTATATTTTATTAAATGGAACTACAACAATGAAAACAAATTATTCCCTGCACTTTCCTAGCAATCTAATGGAAAAGGGATATTCTGATATCGTCTTCCTATATCAAATTTCGGATAAAATCATATCTAAAGTTAAAACATATGTTTTCTGAATGAATTGAGAGGTAAAAACAAGCAAGAAAAGTTTTTTTCGGATCTCTGAAGTGGTCCATTCTCCGCTGAAAGTATCAAAAAGAAGTACCGTAATCACTCTATTACATAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAGACACAATTCAGACAGTTT</pcr_primer_p1>
		<pcr_primer_p2>GAGAATATTGTGATTTTTGAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATCAGACACAATTCAGACAGTTTCAAAATATCATTTTAGAAACCAAGATAATTAAGGTCATAGGAGGTTAGTAGTTGTCTGGAGGAAAATCATCAGACTTCATTTATAATGGAAAAGTTGGATAATTTTCTCGCTTTAAACCCTGCATAGTTCAAGTTTCTTAACAGTAAAAAAGTAATACCCGCAAAACCCTTTTTTCGGAAAGAAAGCGAAACATTCAAAAATTCAAAAATCACAATATTCTC</canonical_amplicon>
		<polymorphic_amplicon>ATCAGACACAATTCAGACAGTTTCAAAATATCATTTTAGAAACCAAGATAATTAAGGTCATAGGAGGTTAGTAGTTGTCTGGAGGAAAATCATCAGACTTCATTTATAATGGAAAASTTGGATAATTTTCTCGCTTTAAACCCTGCATAGTTCAAGTTTCTTAACAGTAAAAAAGTAATACCCGCAAAACCCTTTTTTCGGAAAGAAAGCGAAACATTCAAAAATTCAAAAATCACAATATTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12994</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>317522</contig_pos>
        <strand>+</strand>
        <context>CCGTTTTTTT[G/T]TTGGAATGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATTAGGTGGAAGATTAGACACCCCTTTGCGCTTGTACAACCGTTTTTTT</left_flank>
        <right_flank>TTGGAATGGTGGGGAGGAAAACGAAGAAGACAAACTGTTTGAATAGCCCC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATACAGGTTTTACGGTTCATAACTTCTTGATATGACATTCTTTAAGTCCCAGAAAACTTCAAAACAAACTGATATAATGAAAAACTAAAAATTGTGAATAAATGATCTGATTCGTTATCAGAATCTAGACCAAAATTTTGTCGTCGTTGCCCCAGAAAAAGTGCATTTTCTCACGCTAGCCCAGAATTCCCCAAAAATGTGAATTCTCGGGATCAAGCAGATGTTCATGCGTCATAAAGAAATTTCAACTTTTTCTTATTCTTCTTTGGTCTGAGAATATTTTCTTCCTCAATTTTCAATTCTTGAACATTAAATGTCATGGAAGTAATTGTCTGGTGCCCTTTCCTTTGCCCTTTTCTGTTCATTTTTTCGGCTCCATTTTTATGTGACAAACACGACAAAAAAGAAGAAGACGAACCAGATGGGTGGGGAAGACTTAGGGTAAACATGATTAGGTGGAAGATTAGACACCCCTTTGCGCTTGTACAACCGTTTTTTTTTTGGAATGGTGGGGAGGAAAACGAAGAAGACAAACTGTTTGAATAGCCCCAACGAGTTTTTTCTCTTGGATTGGCTGATTCGCTGAGAGAAGAGAACGCATAACATTTTCCAAGCTGGAAAACATATTTTTGTGAGCTTGTCATCCTCTTTCTAGGTTTCAGTTATTTTTTCGAACCATGGCAATTTCCAGATGTATGAGAACGATTCTTCTCAAATTTGGTGTTTTTTTCGAAAAATTCAGATTGCATACTGTTCAAAACTTTTTTGCTAAATACAGGGGCCCTTCAATTAGAGGGAGATCTTACAATTTTTTGGTAATTTTTTCCAAACTTTTCCAAAGAATATTTCGGTGCATTCTCGTTCACAATCTCTACTATTAACAATTACCGAATTCTGTGTGTGTGTGTGTCTGTTTGTTCCCGGTTAGCAGACCCTATTCCTCAAACTTTCACAGATAATTCTAAATAGCACCGAGACAATGCCCGTCTGTTTTGAATTC</canonical>
            <polymorphic>ATACAGGTTTTACGGTTCATAACTTCTTGATATGACATTCTTTAAGTCCCAGAAAACTTCAAAACAAACTGATATAATGAAAAACTAAAAATTGTGAATAAATGATCTGATTCGTTATCAGAATCTAGACCAAAATTTTGTCGTCGTTGCCCCAGAAAAAGTGCATTTTCTCACGCTAGCCCAGAATTCCCCAAAAATGTGAATTCTCGGGATCAAGCAGATGTTCATGCGTCATAAAGAAATTTCAACTTTTTCTTATTCTTCTTTGGTCTGAGAATATTTTCTTCCTCAATTTTCAATTCTTGAACATTAAATGTCATGGAAGTAATTGTCTGGTGCCCTTTCCTTTGCCCTTTTCTGTTCATTTTTTCGGCTCCATTTTTATGTGACAAACACGACAAAAAAGAAGAAGACGAACCAGATGGGTGGGGAAGACTTAGGGTAAACATGATTAGGTGGAAGATTAGACACCCCTTTGCGCTTGTACAACCGTTTTTTTKTTGGAATGGTGGGGAGGAAAACGAAGAAGACAAACTGTTTGAATAGCCCCAACGAGTTTTTTCTCTTGGATTGGCTGATTCGCTGAGAGAAGAGAACGCATAACATTTTCCAAGCTGGAAAACATATTTTTGTGAGCTTGTCATCCTCTTTCTAGGTTTCAGTTATTTTTTCGAACCATGGCAATTTCCAGATGTATGAGAACGATTCTTCTCAAATTTGGTGTTTTTTTCGAAAAATTCAGATTGCATACTGTTCAAAACTTTTTTGCTAAATACAGGGGCCCTTCAATTAGAGGGAGATCTTACAATTTTTTGGTAATTTTTTCCAAACTTTTCCAAAGAATATTTCGGTGCATTCTCGTTCACAATCTCTACTATTAACAATTACCGAATTCTGTGTGTGTGTGTGTCTGTTTGTTCCCGGTTAGCAGACCCTATTCCTCAAACTTTCACAGATAATTCTAAATAGCACCGAGACAATGCCCGTCTGTTTTGAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCATTTTTATGTGACAAACAC</pcr_primer_p1>
		<pcr_primer_p2>GAAAATGTTATGCGTTCTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CTCCATTTTTATGTGACAAACACGACAAAAAAGAAGAAGACGAACCAGATGGGTGGGGAAGACTTAGGGTAAACATGATTAGGTGGAAGATTAGACACCCCTTTGCGCTTGTACAACCGTTTTTTTTTTGGAATGGTGGGGAGGAAAACGAAGAAGACAAACTGTTTGAATAGCCCCAACGAGTTTTTTCTCTTGGATTGGCTGATTCGCTGAGAGAAGAGAACGCATAACATTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTCCATTTTTATGTGACAAACACGACAAAAAAGAAGAAGACGAACCAGATGGGTGGGGAAGACTTAGGGTAAACATGATTAGGTGGAAGATTAGACACCCCTTTGCGCTTGTACAACCGTTTTTTTKTTGGAATGGTGGGGAGGAAAACGAAGAAGACAAACTGTTTGAATAGCCCCAACGAGTTTTTTCTCTTGGATTGGCTGATTCGCTGAGAGAAGAGAACGCATAACATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12995</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>317371</contig_pos>
        <strand>+</strand>
        <context>YCCTTTCCTT[C/T]GCCCTTTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCTTGAACATTAAATGTCATGGAAGTAATTGTCTGGTGCCCTTTCCTT</left_flank>
        <right_flank>GCCCTTTTCTGTTCATTTTTTCGGCTCCATTTTTATGTGACAAACACGAC</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAAAGTACAGAAATTTTCTGATTTCAAAACACATTTCTAAAGGGGGGAAGGGGGGTCGTTTTTTCACAGAGGGCTCTTCTATAACAAAGGGCCCTTCTATTTTTACAAGCCCCTCTCGGATGGCCCTTCGATTAAAGGGGCCCTTTTAATACAGGTTTTACGGTTCATAACTTCTTGATATGACATTCTTTAAGTCCCAGAAAACTTCAAAACAAACTGATATAATGAAAAACTAAAAATTGTGAATAAATGATCTGATTCGTTATCAGAATCTAGACCAAAATTTTGTCGTCGTTGCCCCAGAAAAAGTGCATTTTCTCACGCTAGCCCAGAATTCCCCAAAAATGTGAATTCTCGGGATCAAGCAGATGTTCATGCGTCATAAAGAAATTTCAACTTTTTCTTATTCTTCTTTGGTCTGAGAATATTTTCTTCCTCAATTTTCAATTCTTGAACATTAAATGTCATGGAAGTAATTGTCTGGTGCCCTTTCCTTTGCCCTTTTCTGTTCATTTTTTCGGCTCCATTTTTATGTGACAAACACGACAAAAAAGAAGAAGACGAACCAGATGGGTGGGGAAGACTTAGGGTAAACATGATTAGGTGGAAGATTAGACACCCCTTTGCGCTTGTACAACCGTTTTTTTTTTGGAATGGTGGGGAGGAAAACGAAGAAGACAAACTGTTTGAATAGCCCCAACGAGTTTTTTCTCTTGGATTGGCTGATTCGCTGAGAGAAGAGAACGCATAACATTTTCCAAGCTGGAAAACATATTTTTGTGAGCTTGTCATCCTCTTTCTAGGTTTCAGTTATTTTTTCGAACCATGGCAATTTCCAGATGTATGAGAACGATTCTTCTCAAATTTGGTGTTTTTTTCGAAAAATTCAGATTGCATACTGTTCAAAACTTTTTTGCTAAATACAGGGGCCCTTCAATTAGAGGGAGATCTTACAATTTTTTGGTAATTTTTTCCAAACTTTTCCAAAGAATATTTC</canonical>
            <polymorphic>TGAAAAAGTACAGAAATTTTCTGATTTCAAAACACATTTCTAAAGGGGGGAAGGGGGGTCGTTTTTTCACAGAGGGCTCTTCTATAACAAAGGGCCCTTCTATTTTTACAAGCCCCTCTCGGATGGCCCTTCGATTAAAGGGGCCCTTTTAATACAGGTTTTACGGTTCATAACTTCTTGATATGACATTCTTTAAGTCCCAGAAAACTTCAAAACAAACTGATATAATGAAAAACTAAAAATTGTGAATAAATGATCTGATTCGTTATCAGAATCTAGACCAAAATTTTGTCGTCGTTGCCCCAGAAAAAGTGCATTTTCTCACGCTAGCCCAGAATTCCCCAAAAATGTGAATTCTCGGGATCAAGCAGATGTTCATGCGTCATAAAGAAATTTCAACTTTTTCTTATTCTTCTTTGGTCTGAGAATATTTTCTTCCTCAATTTTCAATTCTTGAACATTAAATGTCATGGAAGTAATTGTCTGGTGCCCTTTCCTTYGCCCTTTTCTGTTCATTTTTTCGGCTCCATTTTTATGTGACAAACACGACAAAAAAGAAGAAGACGAACCAGATGGGTGGGGAAGACTTAGGGTAAACATGATTAGGTGGAAGATTAGACACCCCTTTGCGCTTGTACAACCGTTTTTTTTTTGGAATGGTGGGGAGGAAAACGAAGAAGACAAACTGTTTGAATAGCCCCAACGAGTTTTTTCTCTTGGATTGGCTGATTCGCTGAGAGAAGAGAACGCATAACATTTTCCAAGCTGGAAAACATATTTTTGTGAGCTTGTCATCCTCTTTCTAGGTTTCAGTTATTTTTTCGAACCATGGCAATTTCCAGATGTATGAGAACGATTCTTCTCAAATTTGGTGTTTTTTTCGAAAAATTCAGATTGCATACTGTTCAAAACTTTTTTGCTAAATACAGGGGCCCTTCAATTAGAGGGAGATCTTACAATTTTTTGGTAATTTTTTCCAAACTTTTCCAAAGAATATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGTCATAAAGAAATTTCAACT</pcr_primer_p1>
		<pcr_primer_p2>GTGTCTAATCTTCCACCTAATCA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GCGTCATAAAGAAATTTCAACTTTTTCTTATTCTTCTTTGGTCTGAGAATATTTTCTTCCTCAATTTTCAATTCTTGAACATTAAATGTCATGGAAGTAATTGTCTGGTGCCCTTTCCTTTGCCCTTTTCTGTTCATTTTTTCGGCTCCATTTTTATGTGACAAACACGACAAAAAAGAAGAAGACGAACCAGATGGGTGGGGAAGACTTAGGGTAAACATGATTAGGTGGAAGATTAGACAC</canonical_amplicon>
		<polymorphic_amplicon>GCGTCATAAAGAAATTTCAACTTTTTCTTATTCTTCTTTGGTCTGAGAATATTTTCTTCCTCAATTTTCAATTCTTGAACATTAAATGTCATGGAAGTAATTGTCTGGTGCCCTTTCCTTYGCCCTTTTCTGTTCATTTTTTCGGCTCCATTTTTATGTGACAAACACGACAAAAAAGAAGAAGACGAACCAGATGGGTGGGGAAGACTTAGGGTAAACATGATTAGGTGGAAGATTAGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12996</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>317354</contig_pos>
        <strand>+</strand>
        <context>GAAGTAATTG[G/T]CTGGTGYCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCTTCCTCAATTTTCAATTCTTGAACATTAAATGTCATGGAAGTAATTG</left_flank>
        <right_flank>CTGGTGCCCTTTCCTTTGCCCTTTTCTGTTCATTTTTTCGGCTCCATTTT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCAGAATATTTTCCACTGAAAAAGTACAGAAATTTTCTGATTTCAAAACACATTTCTAAAGGGGGGAAGGGGGGTCGTTTTTTCACAGAGGGCTCTTCTATAACAAAGGGCCCTTCTATTTTTACAAGCCCCTCTCGGATGGCCCTTCGATTAAAGGGGCCCTTTTAATACAGGTTTTACGGTTCATAACTTCTTGATATGACATTCTTTAAGTCCCAGAAAACTTCAAAACAAACTGATATAATGAAAAACTAAAAATTGTGAATAAATGATCTGATTCGTTATCAGAATCTAGACCAAAATTTTGTCGTCGTTGCCCCAGAAAAAGTGCATTTTCTCACGCTAGCCCAGAATTCCCCAAAAATGTGAATTCTCGGGATCAAGCAGATGTTCATGCGTCATAAAGAAATTTCAACTTTTTCTTATTCTTCTTTGGTCTGAGAATATTTTCTTCCTCAATTTTCAATTCTTGAACATTAAATGTCATGGAAGTAATTGTCTGGTGCCCTTTCCTTTGCCCTTTTCTGTTCATTTTTTCGGCTCCATTTTTATGTGACAAACACGACAAAAAAGAAGAAGACGAACCAGATGGGTGGGGAAGACTTAGGGTAAACATGATTAGGTGGAAGATTAGACACCCCTTTGCGCTTGTACAACCGTTTTTTTTTTGGAATGGTGGGGAGGAAAACGAAGAAGACAAACTGTTTGAATAGCCCCAACGAGTTTTTTCTCTTGGATTGGCTGATTCGCTGAGAGAAGAGAACGCATAACATTTTCCAAGCTGGAAAACATATTTTTGTGAGCTTGTCATCCTCTTTCTAGGTTTCAGTTATTTTTTCGAACCATGGCAATTTCCAGATGTATGAGAACGATTCTTCTCAAATTTGGTGTTTTTTTCGAAAAATTCAGATTGCATACTGTTCAAAACTTTTTTGCTAAATACAGGGGCCCTTCAATTAGAGGGAGATCTTACAATTTTTTGGTAATTTTTTCCAAACT</canonical>
            <polymorphic>CCCAGAATATTTTCCACTGAAAAAGTACAGAAATTTTCTGATTTCAAAACACATTTCTAAAGGGGGGAAGGGGGGTCGTTTTTTCACAGAGGGCTCTTCTATAACAAAGGGCCCTTCTATTTTTACAAGCCCCTCTCGGATGGCCCTTCGATTAAAGGGGCCCTTTTAATACAGGTTTTACGGTTCATAACTTCTTGATATGACATTCTTTAAGTCCCAGAAAACTTCAAAACAAACTGATATAATGAAAAACTAAAAATTGTGAATAAATGATCTGATTCGTTATCAGAATCTAGACCAAAATTTTGTCGTCGTTGCCCCAGAAAAAGTGCATTTTCTCACGCTAGCCCAGAATTCCCCAAAAATGTGAATTCTCGGGATCAAGCAGATGTTCATGCGTCATAAAGAAATTTCAACTTTTTCTTATTCTTCTTTGGTCTGAGAATATTTTCTTCCTCAATTTTCAATTCTTGAACATTAAATGTCATGGAAGTAATTGKCTGGTGCCCTTTCCTTTGCCCTTTTCTGTTCATTTTTTCGGCTCCATTTTTATGTGACAAACACGACAAAAAAGAAGAAGACGAACCAGATGGGTGGGGAAGACTTAGGGTAAACATGATTAGGTGGAAGATTAGACACCCCTTTGCGCTTGTACAACCGTTTTTTTTTTGGAATGGTGGGGAGGAAAACGAAGAAGACAAACTGTTTGAATAGCCCCAACGAGTTTTTTCTCTTGGATTGGCTGATTCGCTGAGAGAAGAGAACGCATAACATTTTCCAAGCTGGAAAACATATTTTTGTGAGCTTGTCATCCTCTTTCTAGGTTTCAGTTATTTTTTCGAACCATGGCAATTTCCAGATGTATGAGAACGATTCTTCTCAAATTTGGTGTTTTTTTCGAAAAATTCAGATTGCATACTGTTCAAAACTTTTTTGCTAAATACAGGGGCCCTTCAATTAGAGGGAGATCTTACAATTTTTTGGTAATTTTTTCCAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGTCATAAAGAAATTTCAACT</pcr_primer_p1>
		<pcr_primer_p2>GTGTCTAATCTTCCACCTAATCA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GCGTCATAAAGAAATTTCAACTTTTTCTTATTCTTCTTTGGTCTGAGAATATTTTCTTCCTCAATTTTCAATTCTTGAACATTAAATGTCATGGAAGTAATTGTCTGGTGCCCTTTCCTTTGCCCTTTTCTGTTCATTTTTTCGGCTCCATTTTTATGTGACAAACACGACAAAAAAGAAGAAGACGAACCAGATGGGTGGGGAAGACTTAGGGTAAACATGATTAGGTGGAAGATTAGACAC</canonical_amplicon>
		<polymorphic_amplicon>GCGTCATAAAGAAATTTCAACTTTTTCTTATTCTTCTTTGGTCTGAGAATATTTTCTTCCTCAATTTTCAATTCTTGAACATTAAATGTCATGGAAGTAATTGKCTGGTGCCCTTTCCTTTGCCCTTTTCTGTTCATTTTTTCGGCTCCATTTTTATGTGACAAACACGACAAAAAAGAAGAAGACGAACCAGATGGGTGGGGAAGACTTAGGGTAAACATGATTAGGTGGAAGATTAGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12997</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>317229</contig_pos>
        <strand>+</strand>
        <context>ATGTGAATTC[C/T]CGGGATCAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAGTGCATTTTCTCACGCTAGCCCAGAATTCCCCAAAAATGTGAATTC</left_flank>
        <right_flank>CGGGATCAAGCAGATGTTCATGCGTCATAAAGAAATTTCAACTTTTTCTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAAAACTCAGGAAATTCAATTTTTCAATCTATCGTGAAACCTTTATTAGAAGGCCCTTCCGTTTTTCTAAGGTACCTCCGGAGGGCTCTTCTTTTACAGGAGCTTCTATTAAATTGTGGAGTTCCCAGAATATTTTCCACTGAAAAAGTACAGAAATTTTCTGATTTCAAAACACATTTCTAAAGGGGGGAAGGGGGGTCGTTTTTTCACAGAGGGCTCTTCTATAACAAAGGGCCCTTCTATTTTTACAAGCCCCTCTCGGATGGCCCTTCGATTAAAGGGGCCCTTTTAATACAGGTTTTACGGTTCATAACTTCTTGATATGACATTCTTTAAGTCCCAGAAAACTTCAAAACAAACTGATATAATGAAAAACTAAAAATTGTGAATAAATGATCTGATTCGTTATCAGAATCTAGACCAAAATTTTGTCGTCGTTGCCCCAGAAAAAGTGCATTTTCTCACGCTAGCCCAGAATTCCCCAAAAATGTGAATTCTCGGGATCAAGCAGATGTTCATGCGTCATAAAGAAATTTCAACTTTTTCTTATTCTTCTTTGGTCTGAGAATATTTTCTTCCTCAATTTTCAATTCTTGAACATTAAATGTCATGGAAGTAATTGTCTGGTGCCCTTTCCTTTGCCCTTTTCTGTTCATTTTTTCGGCTCCATTTTTATGTGACAAACACGACAAAAAAGAAGAAGACGAACCAGATGGGTGGGGAAGACTTAGGGTAAACATGATTAGGTGGAAGATTAGACACCCCTTTGCGCTTGTACAACCGTTTTTTTTTTGGAATGGTGGGGAGGAAAACGAAGAAGACAAACTGTTTGAATAGCCCCAACGAGTTTTTTCTCTTGGATTGGCTGATTCGCTGAGAGAAGAGAACGCATAACATTTTCCAAGCTGGAAAACATATTTTTGTGAGCTTGTCATCCTCTTTCTAGGTTTCAGTTATTTTTTCGAACCATGGCAATTTCCAGATGTATGAGAACGATT</canonical>
            <polymorphic>TAAAAAACTCAGGAAATTCAATTTTTCAATCTATCGTGAAACCTTTATTAGAAGGCCCTTCCGTTTTTCTAAGGTACCTCCGGAGGGCTCTTCTTTTACAGGAGCTTCTATTAAATTGTGGAGTTCCCAGAATATTTTCCACTGAAAAAGTACAGAAATTTTCTGATTTCAAAACACATTTCTAAAGGGGGGAAGGGGGGTCGTTTTTTCACAGAGGGCTCTTCTATAACAAAGGGCCCTTCTATTTTTACAAGCCCCTCTCGGATGGCCCTTCGATTAAAGGGGCCCTTTTAATACAGGTTTTACGGTTCATAACTTCTTGATATGACATTCTTTAAGTCCCAGAAAACTTCAAAACAAACTGATATAATGAAAAACTAAAAATTGTGAATAAATGATCTGATTCGTTATCAGAATCTAGACCAAAATTTTGTCGTCGTTGCCCCAGAAAAAGTGCATTTTCTCACGCTAGCCCAGAATTCCCCAAAAATGTGAATTCYCGGGATCAAGCAGATGTTCATGCGTCATAAAGAAATTTCAACTTTTTCTTATTCTTCTTTGGTCTGAGAATATTTTCTTCCTCAATTTTCAATTCTTGAACATTAAATGTCATGGAAGTAATTGTCTGGTGCCCTTTCCTTTGCCCTTTTCTGTTCATTTTTTCGGCTCCATTTTTATGTGACAAACACGACAAAAAAGAAGAAGACGAACCAGATGGGTGGGGAAGACTTAGGGTAAACATGATTAGGTGGAAGATTAGACACCCCTTTGCGCTTGTACAACCGTTTTTTTTTTGGAATGGTGGGGAGGAAAACGAAGAAGACAAACTGTTTGAATAGCCCCAACGAGTTTTTTCTCTTGGATTGGCTGATTCGCTGAGAGAAGAGAACGCATAACATTTTCCAAGCTGGAAAACATATTTTTGTGAGCTTGTCATCCTCTTTCTAGGTTTCAGTTATTTTTTCGAACCATGGCAATTTCCAGATGTATGAGAACGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>386 239 99 94 83 45 25 19 10</canonical_bands>
                <polymorphic_bands>386 239 177 99 45 25 19 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTAAGTCCCAGAAAACTTCA</pcr_primer_p1>
		<pcr_primer_p2>AGGAAGAAAATATTCTCAGACCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTAAGTCCCAGAAAACTTCAAAACAAACTGATATAATGAAAAACTAAAAATTGTGAATAAATGATCTGATTCGTTATCAGAATCTAGACCAAAATTTTGTCGTCGTTGCCCCAGAAAAAGTGCATTTTCTCACGCTAGCCCAGAATTCCCCAAAAATGTGAATTCTCGGGATCAAGCAGATGTTCATGCGTCATAAAGAAATTTCAACTTTTTCTTATTCTTCTTTGGTCTGAGAATATTTTCTTCCT</canonical_amplicon>
		<polymorphic_amplicon>CTTTAAGTCCCAGAAAACTTCAAAACAAACTGATATAATGAAAAACTAAAAATTGTGAATAAATGATCTGATTCGTTATCAGAATCTAGACCAAAATTTTGTCGTCGTTGCCCCAGAAAAAGTGCATTTTCTCACGCTAGCCCAGAATTCCCCAAAAATGTGAATTCYCGGGATCAAGCAGATGTTCATGCGTCATAAAGAAATTTCAACTTTTTCTTATTCTTCTTTGGTCTGAGAATATTTTCTTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12998</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>366746</contig_pos>
        <strand>+</strand>
        <context>GAGGAGAGGA[A/G]TTCTCGAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACCGTCTCGGAGTTAACAATGCAGTGGTGTGTAACTTGGGAGGAGAGGA</left_flank>
        <right_flank>TTCTCGAAGATTAAGCCAAATGGATTCGACCGTATTCTTCTCGACGCACC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGACTACCTAATGGGCAAGTTCATGGATTTGTTCCCAAATGGAGCAGAGCTTCTTGAGTTCTTAGAGGCTAACGATAACCCAAGACCAGTCACCATTAGAGCCAACTCTTTGAAAGTCAAGCGTCGTGATCTCGCCAAAAACTTGATCAATCGTGGAATGAACGTTGACCCAGCTGCCGAATGGACCAAGGTCGGACTCGTTGTGTACGACTCGCAAGTTCCAGTTGGAGCCACTCCGGAATACCTCGCTGGTCATTACATGATCCAAGGTCTCAACTCTCTTCTCCCAGTTATGGCCCTTGCGCCACAACCTGGAGATCGTGTGCTGGATATGTGTTCCGCTCCAGGAGGAAAGACATCACATATTGCCGCTTTGATGAAAAACAGCGGAACTTTGTTCGCTAATGACGCTAGTTTTGATCGTTGCCGTGCTATCATCGGTAACCTTCACCGTCTCGGAGTTAACAATGCAGTGGTGTGTAACTTGGGAGGAGAGGAGTTCTCGAAGATTAAGCCAAATGGATTCGACCGTATTCTTCTCGACGCACCTTGCTCTGGAACCGGAGTTATTTGGAAGGATCAGTCTGTAAAGACTTCTAAAGATTCTCAGGATGTTCAAAGACGTCACACTGTGCAAAGACAACTGATTCTGTCTGCATTGGACTCTTTGGATGCCAACTCCCCTAACGGAGGATACCTAGTCTATTCCACTTGCTCTGTGCTTGTTGAGGAGAACGAAGCCGTCGTTAACTTCCTTCTCGAACGCCGCCACTGCGAACTCGTGCCAACCGGCCTCGCTATCGGAGTCGACGGCTACACTCGTTTCCGTGACTACCGCTTCCACCCATCACTCTCAATGACCAAACGCTACTATCCTCATGTTCACAACATTGACGGCTTCTATGTTGCTAAAATCAAGAAGCTCTCTAACGCAAAAATGTCGAAGCAGGCAGTGCTGGAAATGGAGAAGGAGAAGGCGTCGGTAAAGTCGCAGAAAAA</canonical>
            <polymorphic>ACGACTACCTAATGGGCAAGTTCATGGATTTGTTCCCAAATGGAGCAGAGCTTCTTGAGTTCTTAGAGGCTAACGATAACCCAAGACCAGTCACCATTAGAGCCAACTCTTTGAAAGTCAAGCGTCGTGATCTCGCCAAAAACTTGATCAATCGTGGAATGAACGTTGACCCAGCTGCCGAATGGACCAAGGTCGGACTCGTTGTGTACGACTCGCAAGTTCCAGTTGGAGCCACTCCGGAATACCTCGCTGGTCATTACATGATCCAAGGTCTCAACTCTCTTCTCCCAGTTATGGCCCTTGCGCCACAACCTGGAGATCGTGTGCTGGATATGTGTTCCGCTCCAGGAGGAAAGACATCACATATTGCCGCTTTGATGAAAAACAGCGGAACTTTGTTCGCTAATGACGCTAGTTTTGATCGTTGCCGTGCTATCATCGGTAACCTTCACCGTCTCGGAGTTAACAATGCAGTGGTGTGTAACTTGGGAGGAGAGGARTTCTCGAAGATTAAGCCAAATGGATTCGACCGTATTCTTCTCGACGCACCTTGCTCTGGAACCGGAGTTATTTGGAAGGATCAGTCTGTAAAGACTTCTAAAGATTCTCAGGATGTTCAAAGACGTCACACTGTGCAAAGACAACTGATTCTGTCTGCATTGGACTCTTTGGATGCCAACTCCCCTAACGGAGGATACCTAGTCTATTCCACTTGCTCTGTGCTTGTTGAGGAGAACGAAGCCGTCGTTAACTTCCTTCTCGAACGCCGCCACTGCGAACTCGTGCCAACCGGCCTCGCTATCGGAGTCGACGGCTACACTCGTTTCCGTGACTACCGCTTCCACCCATCACTCTCAATGACCAAACGCTACTATCCTCATGTTCACAACATTGACGGCTTCTATGTTGCTAAAATCAAGAAGCTCTCTAACGCAAAAATGTCGAAGCAGGCAGTGCTGGAAATGGAGAAGGAGAAGGCGTCGGTAAAGTCGCAGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGAGGAAAGACATCACATA</pcr_primer_p1>
		<pcr_primer_p2>TTACAGACTGATCCTTCCAAATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAGGAGGAAAGACATCACATATTGCCGCTTTGATGAAAAACAGCGGAACTTTGTTCGCTAATGACGCTAGTTTTGATCGTTGCCGTGCTATCATCGGTAACCTTCACCGTCTCGGAGTTAACAATGCAGTGGTGTGTAACTTGGGAGGAGAGGAGTTCTCGAAGATTAAGCCAAATGGATTCGACCGTATTCTTCTCGACGCACCTTGCTCTGGAACCGGAGTTATTTGGAAGGATCAGTCTGTAA</canonical_amplicon>
		<polymorphic_amplicon>CAGGAGGAAAGACATCACATATTGCCGCTTTGATGAAAAACAGCGGAACTTTGTTCGCTAATGACGCTAGTTTTGATCGTTGCCGTGCTATCATCGGTAACCTTCACCGTCTCGGAGTTAACAATGCAGTGGTGTGTAACTTGGGAGGAGAGGARTTCTCGAAGATTAAGCCAAATGGATTCGACCGTATTCTTCTCGACGCACCTTGCTCTGGAACCGGAGTTATTTGGAAGGATCAGTCTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb12999</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>369331</contig_pos>
        <strand>+</strand>
        <context>AGACCAAAAT[A/G]ACTTCGGCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAGAGGAAGACGATTATGGCAGGTAGATAGAAAAAAATAGACCAAAAT</left_flank>
        <right_flank>ACTTCGGCTTGTGACCAAGACTAGAAATGTATTTTTAAATGCTGAAAACC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGCCCGTACTAGAGCAGGAAGAGGAGGTCACTGAACAGGGGAAGGCTGAAAACGAAGAAGATCATCTTGAAGGCACGTCTTCTCAAAACGTGATGGCTAGCGATCGCTTGGCTGCTCCAGCTCCAGTTCGTAGTCCGCCAGAGAGGATGGTAGATCCAAAAGATAAGCCCGTGTTGGATCAGGAGAGATATCTGCCCATTGGTAAGGGAGATAAGACACATCGAAGCTATTTTAAAAAATACAGAAATCTAGAAGGCTTTATTTTCTTCTATATAAAGGTCTTTTCAGTACTAAAAGTGTCCGTTTCCAGCCAACGTTACTCGTCTGATGAAGGGACAAATGGATCCGCAAGCGAAGCTGGCGAAGGACGCGAAGGAGTGTGTGCAGGAGTGTGTATCAGAGTTTATCACCTTCGTCGCTTCTGAAGCCGCCGAGATTTGTAATCAGCAGAAGAGGAAGACGATTATGGCAGGTAGATAGAAAAAAATAGACCAAAATAACTTCGGCTTGTGACCAAGACTAGAAATGTATTTTTAAATGCTGAAAACCAACAAAAAACCAGCTAGGAATAGCCTTGAAATCAATCAAAAAGTACTAATTTCGAACCGAGAATGACTGAATTCTATGCGTTCCACAGGGTTCGAAGTTCGAGGTATGCTGTGGTATGCTGTTGTGCTCTAATGAGAAGGTGACGTGGCGAAGTTTGAGGTGGGGAATCAACTGTCGAGAAATTTGATGTTAACAGATCTAAAACGTTCCTTCGTCACTTTCTCAATAAAGCGCAACAGCGTACCACAGCAGCAGGCCCTGATACTGAAAATTTGGCTGACGAAATATCAGCAGTGAAAAAAAAGGGAACTGATCTTGGATTTTAGTAAAAAAAATCAATTTTCAATTAATAAAGCCCCTCTTCTCCTGTGAGGACAGGAAATAGAGGAAATACAGTATGTTCTCAGGGGAAACTATCAAGAGAACTTCAAATTCCAAGTTTAATAGCTC</canonical>
            <polymorphic>CCGCCCGTACTAGAGCAGGAAGAGGAGGTCACTGAACAGGGGAAGGCTGAAAACGAAGAAGATCATCTTGAAGGCACGTCTTCTCAAAACGTGATGGCTAGCGATCGCTTGGCTGCTCCAGCTCCAGTTCGTAGTCCGCCAGAGAGGATGGTAGATCCAAAAGATAAGCCCGTGTTGGATCAGGAGAGATATCTGCCCATTGGTAAGGGAGATAAGACACATCGAAGCTATTTTAAAAAATACAGAAATCTAGAAGGCTTTATTTTCTTCTATATAAAGGTCTTTTCAGTACTAAAAGTGTCCGTTTCCAGCCAACGTTACTCGTCTGATGAAGGGACAAATGGATCCGCAAGCGAAGCTGGCGAAGGACGCGAAGGAGTGTGTGCAGGAGTGTGTATCAGAGTTTATCACCTTCGTCGCTTCTGAAGCCGCCGAGATTTGTAATCAGCAGAAGAGGAAGACGATTATGGCAGGTAGATAGAAAAAAATAGACCAAAATRACTTCGGCTTGTGACCAAGACTAGAAATGTATTTTTAAATGCTGAAAACCAACAAAAAACCAGCTAGGAATAGCCTTGAAATCAATCAAAAAGTACTAATTTCGAACCGAGAATGACTGAATTCTATGCGTTCCACAGGGTTCGAAGTTCGAGGTATGCTGTGGTATGCTGTTGTGCTCTAATGAGAAGGTGACGTGGCGAAGTTTGAGGTGGGGAATCAACTGTCGAGAAATTTGATGTTAACAGATCTAAAACGTTCCTTCGTCACTTTCTCAATAAAGCGCAACAGCGTACCACAGCAGCAGGCCCTGATACTGAAAATTTGGCTGACGAAATATCAGCAGTGAAAAAAAAGGGAACTGATCTTGGATTTTAGTAAAAAAAATCAATTTTCAATTAATAAAGCCCCTCTTCTCCTGTGAGGACAGGAAATAGAGGAAATACAGTATGTTCTCAGGGGAAACTATCAAGAGAACTTCAAATTCCAAGTTTAATAGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGGAGTGTGTATCAGAGTTTA</pcr_primer_p1>
		<pcr_primer_p2>AACGCATAGAATTCAGTCATTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCAGGAGTGTGTATCAGAGTTTATCACCTTCGTCGCTTCTGAAGCCGCCGAGATTTGTAATCAGCAGAAGAGGAAGACGATTATGGCAGGTAGATAGAAAAAAATAGACCAAAATAACTTCGGCTTGTGACCAAGACTAGAAATGTATTTTTAAATGCTGAAAACCAACAAAAAACCAGCTAGGAATAGCCTTGAAATCAATCAAAAAGTACTAATTTCGAACCGAGAATGACTGAATTCTATGCGTT</canonical_amplicon>
		<polymorphic_amplicon>GCAGGAGTGTGTATCAGAGTTTATCACCTTCGTCGCTTCTGAAGCCGCCGAGATTTGTAATCAGCAGAAGAGGAAGACGATTATGGCAGGTAGATAGAAAAAAATAGACCAAAATRACTTCGGCTTGTGACCAAGACTAGAAATGTATTTTTAAATGCTGAAAACCAACAAAAAACCAGCTAGGAATAGCCTTGAAATCAATCAAAAAGTACTAATTTCGAACCGAGAATGACTGAATTCTATGCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13000</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>368846</contig_pos>
        <strand>+</strand>
        <context>CCGTACTAGA[A/G]CAGGAAGAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGGAACCAACTCTTCAGATCTCAGAAGATCCACCACCGCCCGTACTAGA</left_flank>
        <right_flank>CAGGAAGAGGAGGTCACTGAACAGGGGAAGGCTGAAAACGAAGAAGATCA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGTTCTCACTGACGAAAAGCACAGTGTGGGTGGTATCAACGACGTCGCTCATCGCCTTCCTTCCATACATCATCGAGAAGGAGCGAAGTGACTTGGAGAAGACCCAAGTCGCCCAACAACGTCAGATGCTTCTCGGACCATCGGCCGCCATTCAACAAGCCAAGACTGCTTAATCCTCCCCCCATTTCTCCAATTCCCAATGATCGTTCATCTGTAGTTCCTTTTAGCTTTTACCTCTTCTTTTTCTTCTTATGTGTTAGATTTCCATTAATATACATATTCAAAAATCATACAAAAGTGTTTCTTCAGAACAAGCAGTTTAGGGGTTTCGTCGACCTAGAATCTACCTAATTGCATGCCCATCTCCCCCGTTGATTTTCCGCATGTATCCTTCACACCCACACAAAGACACGTTGCAAGCTCTTAGATTCCAGAAAGATGGCTTCTCCGGAACCAACTCTTCAGATCTCAGAAGATCCACCACCGCCCGTACTAGAGCAGGAAGAGGAGGTCACTGAACAGGGGAAGGCTGAAAACGAAGAAGATCATCTTGAAGGCACGTCTTCTCAAAACGTGATGGCTAGCGATCGCTTGGCTGCTCCAGCTCCAGTTCGTAGTCCGCCAGAGAGGATGGTAGATCCAAAAGATAAGCCCGTGTTGGATCAGGAGAGATATCTGCCCATTGGTAAGGGAGATAAGACACATCGAAGCTATTTTAAAAAATACAGAAATCTAGAAGGCTTTATTTTCTTCTATATAAAGGTCTTTTCAGTACTAAAAGTGTCCGTTTCCAGCCAACGTTACTCGTCTGATGAAGGGACAAATGGATCCGCAAGCGAAGCTGGCGAAGGACGCGAAGGAGTGTGTGCAGGAGTGTGTATCAGAGTTTATCACCTTCGTCGCTTCTGAAGCCGCCGAGATTTGTAATCAGCAGAAGAGGAAGACGATTATGGCAGGTAGATAGAAAAAAATAGACCAAAATAACTTCGGCTTGTGAC</canonical>
            <polymorphic>TCAGTTCTCACTGACGAAAAGCACAGTGTGGGTGGTATCAACGACGTCGCTCATCGCCTTCCTTCCATACATCATCGAGAAGGAGCGAAGTGACTTGGAGAAGACCCAAGTCGCCCAACAACGTCAGATGCTTCTCGGACCATCGGCCGCCATTCAACAAGCCAAGACTGCTTAATCCTCCCCCCATTTCTCCAATTCCCAATGATCGTTCATCTGTAGTTCCTTTTAGCTTTTACCTCTTCTTTTTCTTCTTATGTGTTAGATTTCCATTAATATACATATTCAAAAATCATACAAAAGTGTTTCTTCAGAACAAGCAGTTTAGGGGTTTCGTCGACCTAGAATCTACCTAATTGCATGCCCATCTCCCCCGTTGATTTTCCGCATGTATCCTTCACACCCACACAAAGACACGTTGCAAGCTCTTAGATTCCAGAAAGATGGCTTCTCCGGAACCAACTCTTCAGATCTCAGAAGATCCACCACCGCCCGTACTAGARCAGGAAGAGGAGGTCACTGAACAGGGGAAGGCTGAAAACGAAGAAGATCATCTTGAAGGCACGTCTTCTCAAAACGTGATGGCTAGCGATCGCTTGGCTGCTCCAGCTCCAGTTCGTAGTCCGCCAGAGAGGATGGTAGATCCAAAAGATAAGCCCGTGTTGGATCAGGAGAGATATCTGCCCATTGGTAAGGGAGATAAGACACATCGAAGCTATTTTAAAAAATACAGAAATCTAGAAGGCTTTATTTTCTTCTATATAAAGGTCTTTTCAGTACTAAAAGTGTCCGTTTCCAGCCAACGTTACTCGTCTGATGAAGGGACAAATGGATCCGCAAGCGAAGCTGGCGAAGGACGCGAAGGAGTGTGTGCAGGAGTGTGTATCAGAGTTTATCACCTTCGTCGCTTCTGAAGCCGCCGAGATTTGTAATCAGCAGAAGAGGAAGACGATTATGGCAGGTAGATAGAAAAAAATAGACCAAAATAACTTCGGCTTGTGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTCAGAACAAGCAGTTTAG</pcr_primer_p1>
		<pcr_primer_p2>AGATGATCTTCTTCGTTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTCAGAACAAGCAGTTTAGGGGTTTCGTCGACCTAGAATCTACCTAATTGCATGCCCATCTCCCCCGTTGATTTTCCGCATGTATCCTTCACACCCACACAAAGACACGTTGCAAGCTCTTAGATTCCAGAAAGATGGCTTCTCCGGAACCAACTCTTCAGATCTCAGAAGATCCACCACCGCCCGTACTAGAGCAGGAAGAGGAGGTCACTGAACAGGGGAAGGCTGAAAACGAAGAAGATCATCT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTCAGAACAAGCAGTTTAGGGGTTTCGTCGACCTAGAATCTACCTAATTGCATGCCCATCTCCCCCGTTGATTTTCCGCATGTATCCTTCACACCCACACAAAGACACGTTGCAAGCTCTTAGATTCCAGAAAGATGGCTTCTCCGGAACCAACTCTTCAGATCTCAGAAGATCCACCACCGCCCGTACTAGARCAGGAAGAGGAGGTCACTGAACAGGGGAAGGCTGAAAACGAAGAAGATCATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13001</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>48283</contig_pos>
        <strand></strand>
        <context>TCGAGGGATC[A/G]TCACAGAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAACAAAACAATAAAACAAAAGAAAAAAGTGAAGTTTTATCGAGGGATC</left_flank>
        <right_flank>TCACAGAATTTTGGAAAAATGAAGAGTATAAAAAGAAAGGGTGAAGAAGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGATAAATGAACTTAAAATTGACTGTTTGGGGACTTTCAATTACAGATTTTACAGTCTAAAGAAGCAATTTAATTCTAAGTGAAAGAGAAACTTGAGAGGAATTCAAAATTAATTTGATAAATGAGAAATTTAAAGGTTCGTCTCTGGAAACTATTGAAATACTTCGAAACTCAAGTGTTTCATTCAGAATTTCAAAATAAAAAATTTCAGAAGCTAAGAATTTCGGAATATCAAAATCTCAGAATCTCAGTTTCTCAGAACCTGAAAATATCAGGATTTCAGAATCATTAAGAATACTTTGGCGAATTTCAGAATTTCCAAATTTCAGAATTCCCAAATTTCAAAATTTCAGAATTTCAAGATTTCAGAATTTCAAAATTTCAAAATTTCAAAATTTCAAAAAAAATTCAGTTTTGGAACTGATGTTTTGCAAAAAAGGAAAAGCGGGAAACAAAACAATAAAACAAAAGAAAAAAGTGAAGTTTTATCGAGGGATCATCACAGAATTTTGGAAAAATGAAGAGTATAAAAAGAAAGGGTGAAGAAGAAACGTAAGTTCAAATCTTGCAGCAATCGATTGAGCAAAAACTTCAATTTCTGCATCATATGATTCCGAAACAGGGTACCGGAAAGAGGTGACTGTTCAGAAGGACACATATTCTCTACCTCGAATGGAAAATCACCTCCTATATGGGAACATTAATTTTGGGTTGATAGATATCGAATAACACGATTGAGCCTTCAATTTTATCTTTTGAACATATCATTAAACATTCTACATATAATAATTATATCATCCTTATCATCATTCTTATAATAAATAAATGAAATCGCATCTCTTTAACTGTTTCTTTGTCCTCACGATCTTGAAAAGCTAGAAATTAAATATAAATTGACGTGACCTTTCCAAAAAGAGTGAGGAGTGGAGCGGCGAACAGTAAAATAAATAGGTTAACTCGCGCCGTAGCCGCACCAGCCAGCTGGCCGGTTACGACTAA</canonical>
            <polymorphic>GAGATAAATGAACTTAAAATTGACTGTTTGGGGACTTTCAATTACAGATTTTACAGTCTAAAGAAGCAATTTAATTCTAAGTGAAAGAGAAACTTGAGAGGAATTCAAAATTAATTTGATAAATGAGAAATTTAAAGGTTCGTCTCTGGAAACTATTGAAATACTTCGAAACTCAAGTGTTTCATTCAGAATTTCAAAATAAAAAATTTCAGAAGCTAAGAATTTCGGAATATCAAAATCTCAGAATCTCAGTTTCTCAGAACCTGAAAATATCAGGATTTCAGAATCATTAAGAATACTTTGGCGAATTTCAGAATTTCCAAATTTCAGAATTCCCAAATTTCAAAATTTCAGAATTTCAAGATTTCAGAATTTCAAAATTTCAAAATTTCAAAATTTCAAAAAAAATTCAGTTTTGGAACTGATGTTTTGCAAAAAAGGAAAAGCGGGAAACAAAACAATAAAACAAAAGAAAAAAGTGAAGTTTTATCGAGGGATCRTCACAGAATTTTGGAAAAATGAAGAGTATAAAAAGAAAGGGTGAAGAAGAAACGTAAGTTCAAATCTTGCAGCAATCGATTGAGCAAAAACTTCAATTTCTGCATCATATGATTCCGAAACAGGGTACCGGAAAGAGGTGACTGTTCAGAAGGACACATATTCTCTACCTCGAATGGAAAATCACCTCCTATATGGGAACATTAATTTTGGGTTGATAGATATCGAATAACACGATTGAGCCTTCAATTTTATCTTTTGAACATATCATTAAACATTCTACATATAATAATTATATCATCCTTATCATCATTCTTATAATAAATAAATGAAATCGCATCTCTTTAACTGTTTCTTTGTCCTCACGATCTTGAAAAGCTAGAAATTAAATATAAATTGACGTGACCTTTCCAAAAAGAGTGAGGAGTGGAGCGGCGAACAGTAAAATAAATAGGTTAACTCGCGCCGTAGCCGCACCAGCCAGCTGGCCGGTTACGACTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGAAACAAAACAATAAAACAA</pcr_primer_p1>
		<pcr_primer_p2>ATATAGGAGGTGATTTTCCATTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGGAAACAAAACAATAAAACAAAAGAAAAAAGTGAAGTTTTATCGAGGGATCATCACAGAATTTTGGAAAAATGAAGAGTATAAAAAGAAAGGGTGAAGAAGAAACGTAAGTTCAAATCTTGCAGCAATCGATTGAGCAAAAACTTCAATTTCTGCATCATATGATTCCGAAACAGGGTACCGGAAAGAGGTGACTGTTCAGAAGGACACATATTCTCTACCTCGAATGGAAAATCACCTCCTATAT</canonical_amplicon>
		<polymorphic_amplicon>GGGAAACAAAACAATAAAACAAAAGAAAAAAGTGAAGTTTTATCGAGGGATCRTCACAGAATTTTGGAAAAATGAAGAGTATAAAAAGAAAGGGTGAAGAAGAAACGTAAGTTCAAATCTTGCAGCAATCGATTGAGCAAAAACTTCAATTTCTGCATCATATGATTCCGAAACAGGGTACCGGAAAGAGGTGACTGTTCAGAAGGACACATATTCTCTACCTCGAATGGAAAATCACCTCCTATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13003</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>49720</contig_pos>
        <strand>+</strand>
        <context>ACTGGGACCT[A/T]TTTCGTTAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGCATAAAAAAAGGCCTAGAGATGGGAAAGCAGAAGCCAACTGGGACCT</left_flank>
        <right_flank>TTTCGTTAAGTTGGAAGAAGGAAAGAATGAGGATACTTCAGAATGAACTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATACTACAAAGAATTTTCTAATCCTTCTAAATCCTTCATTAGTAAAATTAGATGTTTCTTTTTTGGGGTAAACCAAACAATATGAAAATCCAATTAGAAAATTTTCGTATAGAGTGTGAAACACAACAATTTCAAATTGATACCAGCCGTAAAAAAGAGAGAAACAGTGAGAAAAGAAGAAGAAACAGAAACCAATTGGTCAGTACATTGAATAGTGTAAAACAGAAAGAGAAGAGAAATAGTGTTGAAGGTCATGAGACACAGGCAATCATTTGACAGTTGTTGTCTTTTTGATAAACGGAAAATGGAAAGAAAATGGGTGGGAAGTTGAATTGAAAAATAAAAAAGAGAAGGAGAAAAAGAAAACGGAGTCATTTTGGAAGGGAGATGGATATAAATTGTATATACGAGAGTGTAGGAGATTTAGAGAAAAAGGGAAAAAAAGAAGGAGCATAAAAAAAGGCCTAGAGATGGGAAAGCAGAAGCCAACTGGGACCTTTTTCGTTAAGTTGGAAGAAGGAAAGAATGAGGATACTTCAGAATGAACTTCATAGAAAACATGAGACTTTCAAACACATTTTTTGAAATATTTCAGTAGTCAAAAAAATGAAAAATTTGTCAAAATTCGTTGTTCCAAGTCCTACCATTCTTTCGGACCTTTTTGTACTGAAAAAGTGAAAAACTGGTGCATTCCAGAAATTGGCAAAAATCAGAAAAACAAGGAATTTTCAAAATTCTCTGTGAATGCAAAGTTATCAATCTCGGTGTGTTTCCCGTTCTCCAAAATTTGCAGAGTGATCGGAAACATACATGATAGCAGAGCTCCAGACTCCTGAAAATCGTCAAAATGGCCGAAAAGCATCTGAAAAATCTGTTTTTGTATATCTTTTTGACCGGTACCGTACATAAAAAATGAGAGAAATTGCGAAAAAAAACACGGATCATGAAGTTTTCTGTTGGAAGACGAGACTCTATTTTTTGGTACCAAGTACAATGTAT</canonical>
            <polymorphic>GATACTACAAAGAATTTTCTAATCCTTCTAAATCCTTCATTAGTAAAATTAGATGTTTCTTTTTTGGGGTAAACCAAACAATATGAAAATCCAATTAGAAAATTTTCGTATAGAGTGTGAAACACAACAATTTCAAATTGATACCAGCCGTAAAAAAGAGAGAAACAGTGAGAAAAGAAGAAGAAACAGAAACCAATTGGTCAGTACATTGAATAGTGTAAAACAGAAAGAGAAGAGAAATAGTGTTGAAGGTCATGAGACACAGGCAATCATTTGACAGTTGTTGTCTTTTTGATAAACGGAAAATGGAAAGAAAATGGGTGGGAAGTTGAATTGAAAAATAAAAAAGAGAAGGAGAAAAAGAAAACGGAGTCATTTTGGAAGGGAGATGGATATAAATTGTATATACGAGAGTGTAGGAGATTTAGAGAAAAAGGGAAAAAAAGAAGGAGCATAAAAAAAGGCCTAGAGATGGGAAAGCAGAAGCCAACTGGGACCTWTTTCGTTAAGTTGGAAGAAGGAAAGAATGAGGATACTTCAGAATGAACTTCATAGAAAACATGAGACTTTCAAACACATTTTTTGAAATATTTCAGTAGTCAAAAAAATGAAAAATTTGTCAAAATTCGTTGTTCCAAGTCCTACCATTCTTTCGGACCTTTTTGTACTGAAAAAGTGAAAAACTGGTGCATTCCAGAAATTGGCAAAAATCAGAAAAACAAGGAATTTTCAAAATTCTCTGTGAATGCAAAGTTATCAATCTCGGTGTGTTTCCCGTTCTCCAAAATTTGCAGAGTGATCGGAAACATACATGATAGCAGAGCTCCAGACTCCTGAAAATCGTCAAAATGGCCGAAAAGCATCTGAAAAATCTGTTTTTGTATATCTTTTTGACCGGTACCGTACATAAAAAATGAGAGAAATTGCGAAAAAAAACACGGATCATGAAGTTTTCTGTTGGAAGACGAGACTCTATTTTTTGGTACCAAGTACAATGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATTTAGAGAAAAAGGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAACTTCATGATCCGTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>534</pcr_amplicon_size>
		<canonical_amplicon>AGATTTAGAGAAAAAGGGAAAAAAAGAAGGAGCATAAAAAAAGGCCTAGAGATGGGAAAGCAGAAGCCAACTGGGACCTTTTTCGTTAAGTTGGAAGAAGGAAAGAATGAGGATACTTCAGAATGAACTTCATAGAAAACATGAGACTTTCAAACACATTTTTTGAAATATTTCAGTAGTCAAAAAAATGAAAAATTTGTCAAAATTCGTTGTTCCAAGTCCTACCATTCTTTCGGACCTTTTTGTACTGAAAAAGTGAAAAACTGGTGCATTCCAGAAATTGGCAAAAATCAGAAAAACAAGGAATTTTCAAAATTCTCTGTGAATGCAAAGTTATCAATCTCGGTGTGTTTCCCGTTCTCCAAAATTTGCAGAGTGATCGGAAACATACATGATAGCAGAGCTCCAGACTCCTGAAAATCGTCAAAATGGCCGAAAAGCATCTGAAAAATCTGTTTTTGTATATCTTTTTGACCGGTACCGTACATAAAAAATGAGAGAAATTGCGAAAAAAAACACGGATCATGAAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>AGATTTAGAGAAAAAGGGAAAAAAAGAAGGAGCATAAAAAAAGGCCTAGAGATGGGAAAGCAGAAGCCAACTGGGACCTWTTTCGTTAAGTTGGAAGAAGGAAAGAATGAGGATACTTCAGAATGAACTTCATAGAAAACATGAGACTTTCAAACACATTTTTTGAAATATTTCAGTAGTCAAAAAAATGAAAAATTTGTCAAAATTCGTTGTTCCAAGTCCTACCATTCTTTCGGACCTTTTTGTACTGAAAAAGTGAAAAACTGGTGCATTCCAGAAATTGGCAAAAATCAGAAAAACAAGGAATTTTCAAAATTCTCTGTGAATGCAAAGTTATCAATCTCGGTGTGTTTCCCGTTCTCCAAAATTTGCAGAGTGATCGGAAACATACATGATAGCAGAGCTCCAGACTCCTGAAAATCGTCAAAATGGCCGAAAAGCATCTGAAAAATCTGTTTTTGTATATCTTTTTGACCGGTACCGTACATAAAAAATGAGAGAAATTGCGAAAAAAAACACGGATCATGAAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13004</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>49635</contig_pos>
        <strand>+</strand>
        <context>TATACGAGAG[A/T]GTAGGAGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAACGGAGTCATTTTGGAAGGGAGATGGATATAAATTGTATATACGAGAG</left_flank>
        <right_flank>GTAGGAGATTTAGAGAAAAAGGGAAAAAAAGAAGGAGCATAAAAAAAGGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATCTCAAAATCTGAAATTTTTGAAATTTAAAAACCGCAGAATATTAAAATTTCAGAATTGACTCAAAAAACTCAAATTTTCAGATACTACAAAGAATTTTCTAATCCTTCTAAATCCTTCATTAGTAAAATTAGATGTTTCTTTTTTGGGGTAAACCAAACAATATGAAAATCCAATTAGAAAATTTTCGTATAGAGTGTGAAACACAACAATTTCAAATTGATACCAGCCGTAAAAAAGAGAGAAACAGTGAGAAAAGAAGAAGAAACAGAAACCAATTGGTCAGTACATTGAATAGTGTAAAACAGAAAGAGAAGAGAAATAGTGTTGAAGGTCATGAGACACAGGCAATCATTTGACAGTTGTTGTCTTTTTGATAAACGGAAAATGGAAAGAAAATGGGTGGGAAGTTGAATTGAAAAATAAAAAAGAGAAGGAGAAAAAGAAAACGGAGTCATTTTGGAAGGGAGATGGATATAAATTGTATATACGAGAGTGTAGGAGATTTAGAGAAAAAGGGAAAAAAAGAAGGAGCATAAAAAAAGGCCTAGAGATGGGAAAGCAGAAGCCAACTGGGACCTTTTTCGTTAAGTTGGAAGAAGGAAAGAATGAGGATACTTCAGAATGAACTTCATAGAAAACATGAGACTTTCAAACACATTTTTTGAAATATTTCAGTAGTCAAAAAAATGAAAAATTTGTCAAAATTCGTTGTTCCAAGTCCTACCATTCTTTCGGACCTTTTTGTACTGAAAAAGTGAAAAACTGGTGCATTCCAGAAATTGGCAAAAATCAGAAAAACAAGGAATTTTCAAAATTCTCTGTGAATGCAAAGTTATCAATCTCGGTGTGTTTCCCGTTCTCCAAAATTTGCAGAGTGATCGGAAACATACATGATAGCAGAGCTCCAGACTCCTGAAAATCGTCAAAATGGCCGAAAAGCATCTGAAAAATCTGTTTTTGTATATCTTTTTGACCGGTACCGTACATAAAAAAT</canonical>
            <polymorphic>AAAATCTCAAAATCTGAAATTTTTGAAATTTAAAAACCGCAGAATATTAAAATTTCAGAATTGACTCAAAAAACTCAAATTTTCAGATACTACAAAGAATTTTCTAATCCTTCTAAATCCTTCATTAGTAAAATTAGATGTTTCTTTTTTGGGGTAAACCAAACAATATGAAAATCCAATTAGAAAATTTTCGTATAGAGTGTGAAACACAACAATTTCAAATTGATACCAGCCGTAAAAAAGAGAGAAACAGTGAGAAAAGAAGAAGAAACAGAAACCAATTGGTCAGTACATTGAATAGTGTAAAACAGAAAGAGAAGAGAAATAGTGTTGAAGGTCATGAGACACAGGCAATCATTTGACAGTTGTTGTCTTTTTGATAAACGGAAAATGGAAAGAAAATGGGTGGGAAGTTGAATTGAAAAATAAAAAAGAGAAGGAGAAAAAGAAAACGGAGTCATTTTGGAAGGGAGATGGATATAAATTGTATATACGAGAGWGTAGGAGATTTAGAGAAAAAGGGAAAAAAAGAAGGAGCATAAAAAAAGGCCTAGAGATGGGAAAGCAGAAGCCAACTGGGACCTTTTTCGTTAAGTTGGAAGAAGGAAAGAATGAGGATACTTCAGAATGAACTTCATAGAAAACATGAGACTTTCAAACACATTTTTTGAAATATTTCAGTAGTCAAAAAAATGAAAAATTTGTCAAAATTCGTTGTTCCAAGTCCTACCATTCTTTCGGACCTTTTTGTACTGAAAAAGTGAAAAACTGGTGCATTCCAGAAATTGGCAAAAATCAGAAAAACAAGGAATTTTCAAAATTCTCTGTGAATGCAAAGTTATCAATCTCGGTGTGTTTCCCGTTCTCCAAAATTTGCAGAGTGATCGGAAACATACATGATAGCAGAGCTCCAGACTCCTGAAAATCGTCAAAATGGCCGAAAAGCATCTGAAAAATCTGTTTTTGTATATCTTTTTGACCGGTACCGTACATAAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>202 160 117 102 93 61 55 48 46 28 27 24 17 11 5 2 2</canonical_bands>
                <polymorphic_bands>253 202 117 102 61 55 48 46 28 27 24 17 11 5 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGACAGTTGTTGTCTTTTTGATA</pcr_primer_p1>
		<pcr_primer_p2>TTCTTTCCTTCTTCCAACTTAAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TGACAGTTGTTGTCTTTTTGATAAACGGAAAATGGAAAGAAAATGGGTGGGAAGTTGAATTGAAAAATAAAAAAGAGAAGGAGAAAAAGAAAACGGAGTCATTTTGGAAGGGAGATGGATATAAATTGTATATACGAGAGTGTAGGAGATTTAGAGAAAAAGGGAAAAAAAGAAGGAGCATAAAAAAAGGCCTAGAGATGGGAAAGCAGAAGCCAACTGGGACCTTTTTCGTTAAGTTGGAAGAAGGAAAGAA</canonical_amplicon>
		<polymorphic_amplicon>TGACAGTTGTTGTCTTTTTGATAAACGGAAAATGGAAAGAAAATGGGTGGGAAGTTGAATTGAAAAATAAAAAAGAGAAGGAGAAAAAGAAAACGGAGTCATTTTGGAAGGGAGATGGATATAAATTGTATATACGAGAGWGTAGGAGATTTAGAGAAAAAGGGAAAAAAAGAAGGAGCATAAAAAAAGGCCTAGAGATGGGAAAGCAGAAGCCAACTGGGACCTTTTTCGTTAAGTTGGAAGAAGGAAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13005</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>49531</contig_pos>
        <strand>+</strand>
        <context>GGAAAATGGR[A/G]AGAAAATGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACAGGCAATCATTTGACAGTTGTTGTCTTTTTGATAAACGGAAAATGGA</left_flank>
        <right_flank>AGAAAATGGGTGGGAAGTTGAATTGAAAAATAAAAAAGAGAAGGAGAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCTCAGGATCTTATAATAAAATCTCAAAAGCTCAGAATTCGAATTCAAGAATTTCAGAGTCTCGGAATTTCGGAATTTCAAGTTTCAGGATTTCAGAATTACAAAATCTCAAAATCTGAAATTTTTGAAATTTAAAAACCGCAGAATATTAAAATTTCAGAATTGACTCAAAAAACTCAAATTTTCAGATACTACAAAGAATTTTCTAATCCTTCTAAATCCTTCATTAGTAAAATTAGATGTTTCTTTTTTGGGGTAAACCAAACAATATGAAAATCCAATTAGAAAATTTTCGTATAGAGTGTGAAACACAACAATTTCAAATTGATACCAGCCGTAAAAAAGAGAGAAACAGTGAGAAAAGAAGAAGAAACAGAAACCAATTGGTCAGTACATTGAATAGTGTAAAACAGAAAGAGAAGAGAAATAGTGTTGAAGGTCATGAGACACAGGCAATCATTTGACAGTTGTTGTCTTTTTGATAAACGGAAAATGGAAAGAAAATGGGTGGGAAGTTGAATTGAAAAATAAAAAAGAGAAGGAGAAAAAGAAAACGGAGTCATTTTGGAAGGGAGATGGATATAAATTGTATATACGAGAGTGTAGGAGATTTAGAGAAAAAGGGAAAAAAAGAAGGAGCATAAAAAAAGGCCTAGAGATGGGAAAGCAGAAGCCAACTGGGACCTTTTTCGTTAAGTTGGAAGAAGGAAAGAATGAGGATACTTCAGAATGAACTTCATAGAAAACATGAGACTTTCAAACACATTTTTTGAAATATTTCAGTAGTCAAAAAAATGAAAAATTTGTCAAAATTCGTTGTTCCAAGTCCTACCATTCTTTCGGACCTTTTTGTACTGAAAAAGTGAAAAACTGGTGCATTCCAGAAATTGGCAAAAATCAGAAAAACAAGGAATTTTCAAAATTCTCTGTGAATGCAAAGTTATCAATCTCGGTGTGTTTCCCGTTCTCCAAAATTTGCAGAGTGATCGGAAACATAC</canonical>
            <polymorphic>GATCTCAGGATCTTATAATAAAATCTCAAAAGCTCAGAATTCGAATTCAAGAATTTCAGAGTCTCGGAATTTCGGAATTTCAAGTTTCAGGATTTCAGAATTACAAAATCTCAAAATCTGAAATTTTTGAAATTTAAAAACCGCAGAATATTAAAATTTCAGAATTGACTCAAAAAACTCAAATTTTCAGATACTACAAAGAATTTTCTAATCCTTCTAAATCCTTCATTAGTAAAATTAGATGTTTCTTTTTTGGGGTAAACCAAACAATATGAAAATCCAATTAGAAAATTTTCGTATAGAGTGTGAAACACAACAATTTCAAATTGATACCAGCCGTAAAAAAGAGAGAAACAGTGAGAAAAGAAGAAGAAACAGAAACCAATTGGTCAGTACATTGAATAGTGTAAAACAGAAAGAGAAGAGAAATAGTGTTGAAGGTCATGAGACACAGGCAATCATTTGACAGTTGTTGTCTTTTTGATAAACGGAAAATGGARAGAAAATGGGTGGGAAGTTGAATTGAAAAATAAAAAAGAGAAGGAGAAAAAGAAAACGGAGTCATTTTGGAAGGGAGATGGATATAAATTGTATATACGAGAGTGTAGGAGATTTAGAGAAAAAGGGAAAAAAAGAAGGAGCATAAAAAAAGGCCTAGAGATGGGAAAGCAGAAGCCAACTGGGACCTTTTTCGTTAAGTTGGAAGAAGGAAAGAATGAGGATACTTCAGAATGAACTTCATAGAAAACATGAGACTTTCAAACACATTTTTTGAAATATTTCAGTAGTCAAAAAAATGAAAAATTTGTCAAAATTCGTTGTTCCAAGTCCTACCATTCTTTCGGACCTTTTTGTACTGAAAAAGTGAAAAACTGGTGCATTCCAGAAATTGGCAAAAATCAGAAAAACAAGGAATTTTCAAAATTCTCTGTGAATGCAAAGTTATCAATCTCGGTGTGTTTCCCGTTCTCCAAAATTTGCAGAGTGATCGGAAACATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGGTCAGTACATTGAATAGTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTCCCTTTTTCTCTAAATCTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATTGGTCAGTACATTGAATAGTGTAAAACAGAAAGAGAAGAGAAATAGTGTTGAAGGTCATGAGACACAGGCAATCATTTGACAGTTGTTGTCTTTTTGATAAACGGAAAATGGAAAGAAAATGGGTGGGAAGTTGAATTGAAAAATAAAAAAGAGAAGGAGAAAAAGAAAACGGAGTCATTTTGGAAGGGAGATGGATATAAATTGTATATACGAGAGTGTAGGAGATTTAGAGAAAAAGGGAAAA</canonical_amplicon>
		<polymorphic_amplicon>AATTGGTCAGTACATTGAATAGTGTAAAACAGAAAGAGAAGAGAAATAGTGTTGAAGGTCATGAGACACAGGCAATCATTTGACAGTTGTTGTCTTTTTGATAAACGGAAAATGGARAGAAAATGGGTGGGAAGTTGAATTGAAAAATAAAAAAGAGAAGGAGAAAAAGAAAACGGAGTCATTTTGGAAGGGAGATGGATATAAATTGTATATACGAGAGTGTAGGAGATTTAGAGAAAAAGGGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13006</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>49530</contig_pos>
        <strand>+</strand>
        <context>CGGAAAATGG[A/G]RAGAAAATGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACACAGGCAATCATTTGACAGTTGTTGTCTTTTTGATAAACGGAAAATGG</left_flank>
        <right_flank>AAGAAAATGGGTGGGAAGTTGAATTGAAAAATAAAAAAGAGAAGGAGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATCTCAGGATCTTATAATAAAATCTCAAAAGCTCAGAATTCGAATTCAAGAATTTCAGAGTCTCGGAATTTCGGAATTTCAAGTTTCAGGATTTCAGAATTACAAAATCTCAAAATCTGAAATTTTTGAAATTTAAAAACCGCAGAATATTAAAATTTCAGAATTGACTCAAAAAACTCAAATTTTCAGATACTACAAAGAATTTTCTAATCCTTCTAAATCCTTCATTAGTAAAATTAGATGTTTCTTTTTTGGGGTAAACCAAACAATATGAAAATCCAATTAGAAAATTTTCGTATAGAGTGTGAAACACAACAATTTCAAATTGATACCAGCCGTAAAAAAGAGAGAAACAGTGAGAAAAGAAGAAGAAACAGAAACCAATTGGTCAGTACATTGAATAGTGTAAAACAGAAAGAGAAGAGAAATAGTGTTGAAGGTCATGAGACACAGGCAATCATTTGACAGTTGTTGTCTTTTTGATAAACGGAAAATGGAAAGAAAATGGGTGGGAAGTTGAATTGAAAAATAAAAAAGAGAAGGAGAAAAAGAAAACGGAGTCATTTTGGAAGGGAGATGGATATAAATTGTATATACGAGAGTGTAGGAGATTTAGAGAAAAAGGGAAAAAAAGAAGGAGCATAAAAAAAGGCCTAGAGATGGGAAAGCAGAAGCCAACTGGGACCTTTTTCGTTAAGTTGGAAGAAGGAAAGAATGAGGATACTTCAGAATGAACTTCATAGAAAACATGAGACTTTCAAACACATTTTTTGAAATATTTCAGTAGTCAAAAAAATGAAAAATTTGTCAAAATTCGTTGTTCCAAGTCCTACCATTCTTTCGGACCTTTTTGTACTGAAAAAGTGAAAAACTGGTGCATTCCAGAAATTGGCAAAAATCAGAAAAACAAGGAATTTTCAAAATTCTCTGTGAATGCAAAGTTATCAATCTCGGTGTGTTTCCCGTTCTCCAAAATTTGCAGAGTGATCGGAAACATA</canonical>
            <polymorphic>GGATCTCAGGATCTTATAATAAAATCTCAAAAGCTCAGAATTCGAATTCAAGAATTTCAGAGTCTCGGAATTTCGGAATTTCAAGTTTCAGGATTTCAGAATTACAAAATCTCAAAATCTGAAATTTTTGAAATTTAAAAACCGCAGAATATTAAAATTTCAGAATTGACTCAAAAAACTCAAATTTTCAGATACTACAAAGAATTTTCTAATCCTTCTAAATCCTTCATTAGTAAAATTAGATGTTTCTTTTTTGGGGTAAACCAAACAATATGAAAATCCAATTAGAAAATTTTCGTATAGAGTGTGAAACACAACAATTTCAAATTGATACCAGCCGTAAAAAAGAGAGAAACAGTGAGAAAAGAAGAAGAAACAGAAACCAATTGGTCAGTACATTGAATAGTGTAAAACAGAAAGAGAAGAGAAATAGTGTTGAAGGTCATGAGACACAGGCAATCATTTGACAGTTGTTGTCTTTTTGATAAACGGAAAATGGRAAGAAAATGGGTGGGAAGTTGAATTGAAAAATAAAAAAGAGAAGGAGAAAAAGAAAACGGAGTCATTTTGGAAGGGAGATGGATATAAATTGTATATACGAGAGTGTAGGAGATTTAGAGAAAAAGGGAAAAAAAGAAGGAGCATAAAAAAAGGCCTAGAGATGGGAAAGCAGAAGCCAACTGGGACCTTTTTCGTTAAGTTGGAAGAAGGAAAGAATGAGGATACTTCAGAATGAACTTCATAGAAAACATGAGACTTTCAAACACATTTTTTGAAATATTTCAGTAGTCAAAAAAATGAAAAATTTGTCAAAATTCGTTGTTCCAAGTCCTACCATTCTTTCGGACCTTTTTGTACTGAAAAAGTGAAAAACTGGTGCATTCCAGAAATTGGCAAAAATCAGAAAAACAAGGAATTTTCAAAATTCTCTGTGAATGCAAAGTTATCAATCTCGGTGTGTTTCCCGTTCTCCAAAATTTGCAGAGTGATCGGAAACATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGGTCAGTACATTGAATAGTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTCCCTTTTTCTCTAAATCTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATTGGTCAGTACATTGAATAGTGTAAAACAGAAAGAGAAGAGAAATAGTGTTGAAGGTCATGAGACACAGGCAATCATTTGACAGTTGTTGTCTTTTTGATAAACGGAAAATGGAAAGAAAATGGGTGGGAAGTTGAATTGAAAAATAAAAAAGAGAAGGAGAAAAAGAAAACGGAGTCATTTTGGAAGGGAGATGGATATAAATTGTATATACGAGAGTGTAGGAGATTTAGAGAAAAAGGGAAAA</canonical_amplicon>
		<polymorphic_amplicon>AATTGGTCAGTACATTGAATAGTGTAAAACAGAAAGAGAAGAGAAATAGTGTTGAAGGTCATGAGACACAGGCAATCATTTGACAGTTGTTGTCTTTTTGATAAACGGAAAATGGRAAGAAAATGGGTGGGAAGTTGAATTGAAAAATAAAAAAGAGAAGGAGAAAAAGAAAACGGAGTCATTTTGGAAGGGAGATGGATATAAATTGTATATACGAGAGTGTAGGAGATTTAGAGAAAAAGGGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13007</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>49491</contig_pos>
        <strand>+</strand>
        <context>CRCAGGCAAT[C/T]ATTTGACAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACAGAAAGAGAAGAGAAATAGTGTTGAAGGTCATGAGACACAGGCAAT</left_flank>
        <right_flank>ATTTGACAGTTGTTGTCTTTTTGATAAACGGAAAATGGAAAGAAAATGGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAGATCCTCTTTAAAATTTCGGATTTTTAGAATCCCAGGATCTCAGGATCTTATAATAAAATCTCAAAAGCTCAGAATTCGAATTCAAGAATTTCAGAGTCTCGGAATTTCGGAATTTCAAGTTTCAGGATTTCAGAATTACAAAATCTCAAAATCTGAAATTTTTGAAATTTAAAAACCGCAGAATATTAAAATTTCAGAATTGACTCAAAAAACTCAAATTTTCAGATACTACAAAGAATTTTCTAATCCTTCTAAATCCTTCATTAGTAAAATTAGATGTTTCTTTTTTGGGGTAAACCAAACAATATGAAAATCCAATTAGAAAATTTTCGTATAGAGTGTGAAACACAACAATTTCAAATTGATACCAGCCGTAAAAAAGAGAGAAACAGTGAGAAAAGAAGAAGAAACAGAAACCAATTGGTCAGTACATTGAATAGTGTAAAACAGAAAGAGAAGAGAAATAGTGTTGAAGGTCATGAGACACAGGCAATCATTTGACAGTTGTTGTCTTTTTGATAAACGGAAAATGGAAAGAAAATGGGTGGGAAGTTGAATTGAAAAATAAAAAAGAGAAGGAGAAAAAGAAAACGGAGTCATTTTGGAAGGGAGATGGATATAAATTGTATATACGAGAGTGTAGGAGATTTAGAGAAAAAGGGAAAAAAAGAAGGAGCATAAAAAAAGGCCTAGAGATGGGAAAGCAGAAGCCAACTGGGACCTTTTTCGTTAAGTTGGAAGAAGGAAAGAATGAGGATACTTCAGAATGAACTTCATAGAAAACATGAGACTTTCAAACACATTTTTTGAAATATTTCAGTAGTCAAAAAAATGAAAAATTTGTCAAAATTCGTTGTTCCAAGTCCTACCATTCTTTCGGACCTTTTTGTACTGAAAAAGTGAAAAACTGGTGCATTCCAGAAATTGGCAAAAATCAGAAAAACAAGGAATTTTCAAAATTCTCTGTGAATGCAAAGTTATCAATCTCGGTGTGT</canonical>
            <polymorphic>CTCAGATCCTCTTTAAAATTTCGGATTTTTAGAATCCCAGGATCTCAGGATCTTATAATAAAATCTCAAAAGCTCAGAATTCGAATTCAAGAATTTCAGAGTCTCGGAATTTCGGAATTTCAAGTTTCAGGATTTCAGAATTACAAAATCTCAAAATCTGAAATTTTTGAAATTTAAAAACCGCAGAATATTAAAATTTCAGAATTGACTCAAAAAACTCAAATTTTCAGATACTACAAAGAATTTTCTAATCCTTCTAAATCCTTCATTAGTAAAATTAGATGTTTCTTTTTTGGGGTAAACCAAACAATATGAAAATCCAATTAGAAAATTTTCGTATAGAGTGTGAAACACAACAATTTCAAATTGATACCAGCCGTAAAAAAGAGAGAAACAGTGAGAAAAGAAGAAGAAACAGAAACCAATTGGTCAGTACATTGAATAGTGTAAAACAGAAAGAGAAGAGAAATAGTGTTGAAGGTCATGAGACACAGGCAATYATTTGACAGTTGTTGTCTTTTTGATAAACGGAAAATGGAAAGAAAATGGGTGGGAAGTTGAATTGAAAAATAAAAAAGAGAAGGAGAAAAAGAAAACGGAGTCATTTTGGAAGGGAGATGGATATAAATTGTATATACGAGAGTGTAGGAGATTTAGAGAAAAAGGGAAAAAAAGAAGGAGCATAAAAAAAGGCCTAGAGATGGGAAAGCAGAAGCCAACTGGGACCTTTTTCGTTAAGTTGGAAGAAGGAAAGAATGAGGATACTTCAGAATGAACTTCATAGAAAACATGAGACTTTCAAACACATTTTTTGAAATATTTCAGTAGTCAAAAAAATGAAAAATTTGTCAAAATTCGTTGTTCCAAGTCCTACCATTCTTTCGGACCTTTTTGTACTGAAAAAGTGAAAAACTGGTGCATTCCAGAAATTGGCAAAAATCAGAAAAACAAGGAATTTTCAAAATTCTCTGTGAATGCAAAGTTATCAATCTCGGTGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGGTCAGTACATTGAATAGTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTCCCTTTTTCTCTAAATCTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATTGGTCAGTACATTGAATAGTGTAAAACAGAAAGAGAAGAGAAATAGTGTTGAAGGTCATGAGACACAGGCAATCATTTGACAGTTGTTGTCTTTTTGATAAACGGAAAATGGAAAGAAAATGGGTGGGAAGTTGAATTGAAAAATAAAAAAGAGAAGGAGAAAAAGAAAACGGAGTCATTTTGGAAGGGAGATGGATATAAATTGTATATACGAGAGTGTAGGAGATTTAGAGAAAAAGGGAAAA</canonical_amplicon>
		<polymorphic_amplicon>AATTGGTCAGTACATTGAATAGTGTAAAACAGAAAGAGAAGAGAAATAGTGTTGAAGGTCATGAGACACAGGCAATYATTTGACAGTTGTTGTCTTTTTGATAAACGGAAAATGGAAAGAAAATGGGTGGGAAGTTGAATTGAAAAATAAAAAAGAGAAGGAGAAAAAGAAAACGGAGTCATTTTGGAAGGGAGATGGATATAAATTGTATATACGAGAGTGTAGGAGATTTAGAGAAAAAGGGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13008</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>49482</contig_pos>
        <strand>+</strand>
        <context>GTCATGAGAC[A/G]CAGGCAATYA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATAGTGTAAAACAGAAAGAGAAGAGAAATAGTGTTGAAGGTCATGAGAC</left_flank>
        <right_flank>CAGGCAATCATTTGACAGTTGTTGTCTTTTTGATAAACGGAAAATGGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCAGAACCTCAGATCCTCTTTAAAATTTCGGATTTTTAGAATCCCAGGATCTCAGGATCTTATAATAAAATCTCAAAAGCTCAGAATTCGAATTCAAGAATTTCAGAGTCTCGGAATTTCGGAATTTCAAGTTTCAGGATTTCAGAATTACAAAATCTCAAAATCTGAAATTTTTGAAATTTAAAAACCGCAGAATATTAAAATTTCAGAATTGACTCAAAAAACTCAAATTTTCAGATACTACAAAGAATTTTCTAATCCTTCTAAATCCTTCATTAGTAAAATTAGATGTTTCTTTTTTGGGGTAAACCAAACAATATGAAAATCCAATTAGAAAATTTTCGTATAGAGTGTGAAACACAACAATTTCAAATTGATACCAGCCGTAAAAAAGAGAGAAACAGTGAGAAAAGAAGAAGAAACAGAAACCAATTGGTCAGTACATTGAATAGTGTAAAACAGAAAGAGAAGAGAAATAGTGTTGAAGGTCATGAGACACAGGCAATCATTTGACAGTTGTTGTCTTTTTGATAAACGGAAAATGGAAAGAAAATGGGTGGGAAGTTGAATTGAAAAATAAAAAAGAGAAGGAGAAAAAGAAAACGGAGTCATTTTGGAAGGGAGATGGATATAAATTGTATATACGAGAGTGTAGGAGATTTAGAGAAAAAGGGAAAAAAAGAAGGAGCATAAAAAAAGGCCTAGAGATGGGAAAGCAGAAGCCAACTGGGACCTTTTTCGTTAAGTTGGAAGAAGGAAAGAATGAGGATACTTCAGAATGAACTTCATAGAAAACATGAGACTTTCAAACACATTTTTTGAAATATTTCAGTAGTCAAAAAAATGAAAAATTTGTCAAAATTCGTTGTTCCAAGTCCTACCATTCTTTCGGACCTTTTTGTACTGAAAAAGTGAAAAACTGGTGCATTCCAGAAATTGGCAAAAATCAGAAAAACAAGGAATTTTCAAAATTCTCTGTGAATGCAAAGTTATCAATC</canonical>
            <polymorphic>TTTCAGAACCTCAGATCCTCTTTAAAATTTCGGATTTTTAGAATCCCAGGATCTCAGGATCTTATAATAAAATCTCAAAAGCTCAGAATTCGAATTCAAGAATTTCAGAGTCTCGGAATTTCGGAATTTCAAGTTTCAGGATTTCAGAATTACAAAATCTCAAAATCTGAAATTTTTGAAATTTAAAAACCGCAGAATATTAAAATTTCAGAATTGACTCAAAAAACTCAAATTTTCAGATACTACAAAGAATTTTCTAATCCTTCTAAATCCTTCATTAGTAAAATTAGATGTTTCTTTTTTGGGGTAAACCAAACAATATGAAAATCCAATTAGAAAATTTTCGTATAGAGTGTGAAACACAACAATTTCAAATTGATACCAGCCGTAAAAAAGAGAGAAACAGTGAGAAAAGAAGAAGAAACAGAAACCAATTGGTCAGTACATTGAATAGTGTAAAACAGAAAGAGAAGAGAAATAGTGTTGAAGGTCATGAGACRCAGGCAATCATTTGACAGTTGTTGTCTTTTTGATAAACGGAAAATGGAAAGAAAATGGGTGGGAAGTTGAATTGAAAAATAAAAAAGAGAAGGAGAAAAAGAAAACGGAGTCATTTTGGAAGGGAGATGGATATAAATTGTATATACGAGAGTGTAGGAGATTTAGAGAAAAAGGGAAAAAAAGAAGGAGCATAAAAAAAGGCCTAGAGATGGGAAAGCAGAAGCCAACTGGGACCTTTTTCGTTAAGTTGGAAGAAGGAAAGAATGAGGATACTTCAGAATGAACTTCATAGAAAACATGAGACTTTCAAACACATTTTTTGAAATATTTCAGTAGTCAAAAAAATGAAAAATTTGTCAAAATTCGTTGTTCCAAGTCCTACCATTCTTTCGGACCTTTTTGTACTGAAAAAGTGAAAAACTGGTGCATTCCAGAAATTGGCAAAAATCAGAAAAACAAGGAATTTTCAAAATTCTCTGTGAATGCAAAGTTATCAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>355 160 102 93 61 55 48 46 27 18 17 11 5 2</canonical_bands>
                <polymorphic_bands>355 160 102 93 78 55 48 46 27 18 11 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGGTCAGTACATTGAATAGTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTCCCTTTTTCTCTAAATCTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATTGGTCAGTACATTGAATAGTGTAAAACAGAAAGAGAAGAGAAATAGTGTTGAAGGTCATGAGACACAGGCAATCATTTGACAGTTGTTGTCTTTTTGATAAACGGAAAATGGAAAGAAAATGGGTGGGAAGTTGAATTGAAAAATAAAAAAGAGAAGGAGAAAAAGAAAACGGAGTCATTTTGGAAGGGAGATGGATATAAATTGTATATACGAGAGTGTAGGAGATTTAGAGAAAAAGGGAAAA</canonical_amplicon>
		<polymorphic_amplicon>AATTGGTCAGTACATTGAATAGTGTAAAACAGAAAGAGAAGAGAAATAGTGTTGAAGGTCATGAGACRCAGGCAATCATTTGACAGTTGTTGTCTTTTTGATAAACGGAAAATGGAAAGAAAATGGGTGGGAAGTTGAATTGAAAAATAAAAAAGAGAAGGAGAAAAAGAAAACGGAGTCATTTTGGAAGGGAGATGGATATAAATTGTATATACGAGAGTGTAGGAGATTTAGAGAAAAAGGGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13009</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>82677</contig_pos>
        <strand>+</strand>
        <context>CGTCGTCACC[A/G]CTGAGGGCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCCTAGTCCACCGCCCACGGGATCCGAATCGTCACAACCGTCGTCACC</left_flank>
        <right_flank>CTGAGGGCAGATTTCGATACTAAAATTCATTTGACCTACTCTACAGACGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTCGCCGTCATGCATATTTTCTTTAAAGGCGCATATCTCTTGAGCCAATAAGACTATTCAAATTTTGGCAACTAACAAAATGTGTAACATTTTAAGAGCTATAATTCACTAGTTCACAAATTTATTATTATTATTTTTTGATTTTTGAGATATGGCGCTTCGAAGTTTAGAAGCTTGCGTATCCCTGGCAGAGTGCCAAAACTCAAAATCTAGAACTTTCTTCTCACTTGTTTTTCCATTCAAACTTATTCCGTTCTTTTTTTTTCTCTCTCTCTCTCACCCTCTATTCTACCTGATCACCACCCCTTCTTACCGTTCTTAGGCTCCGCCCACTTTTCCCTCTGGGCTCTTCTCCCCCCTTTTCCTGCTCCTATTCCTTGTTTTCTCTTTTTCCATATCATTTGCATACTGTATAAAACTTCAGATCATCAGAAAAATGGAAGAAGAAAATCCTAGTCCACCGCCCACGGGATCCGAATCGTCACAACCGTCGTCACCACTGAGGGCAGATTTCGATACTAAAATTCATTTGACCTACTCTACAGACGATGATAAGATTGAAGGTTAGTGGGTACTGTAGATAAGGTGGCCTGGAAATAGAGGAGTGAGAGAGTTAGGTCATAGAGGAGTGAGAGAGTTAGGTCGTAGAAAAGATAGTATACCGTATCTTCTCTAATAGAAGCTCACCAAAACCGTCAACTTTGAGCTCAATTATCTCGATTCCTGGAAAAGATTTGAAAAATGTATCAACTGATAAAATGTTGGTGATACTATGATAAATAATTTATTAGTTGACAAATTTTTGATATCTTTTTTGATATCTTTACGGTAACTGAATTAATTGAGCTCAAAGTTTGGATGAGCTACTATTAGAGATAGTTCCACATTCTAGGCCATGCTCTTGAAGTTTTAAGATATCGTTCTGGCAATTTAGATAAAAACTCTAGATTATCGGATTCTAGGCCACCAATTCTAGGCTACGAAGTTTTGAAAATTAGG</canonical>
            <polymorphic>GCTCGCCGTCATGCATATTTTCTTTAAAGGCGCATATCTCTTGAGCCAATAAGACTATTCAAATTTTGGCAACTAACAAAATGTGTAACATTTTAAGAGCTATAATTCACTAGTTCACAAATTTATTATTATTATTTTTTGATTTTTGAGATATGGCGCTTCGAAGTTTAGAAGCTTGCGTATCCCTGGCAGAGTGCCAAAACTCAAAATCTAGAACTTTCTTCTCACTTGTTTTTCCATTCAAACTTATTCCGTTCTTTTTTTTTCTCTCTCTCTCTCACCCTCTATTCTACCTGATCACCACCCCTTCTTACCGTTCTTAGGCTCCGCCCACTTTTCCCTCTGGGCTCTTCTCCCCCCTTTTCCTGCTCCTATTCCTTGTTTTCTCTTTTTCCATATCATTTGCATACTGTATAAAACTTCAGATCATCAGAAAAATGGAAGAAGAAAATCCTAGTCCACCGCCCACGGGATCCGAATCGTCACAACCGTCGTCACCRCTGAGGGCAGATTTCGATACTAAAATTCATTTGACCTACTCTACAGACGATGATAAGATTGAAGGTTAGTGGGTACTGTAGATAAGGTGGCCTGGAAATAGAGGAGTGAGAGAGTTAGGTCATAGAGGAGTGAGAGAGTTAGGTCGTAGAAAAGATAGTATACCGTATCTTCTCTAATAGAAGCTCACCAAAACCGTCAACTTTGAGCTCAATTATCTCGATTCCTGGAAAAGATTTGAAAAATGTATCAACTGATAAAATGTTGGTGATACTATGATAAATAATTTATTAGTTGACAAATTTTTGATATCTTTTTTGATATCTTTACGGTAACTGAATTAATTGAGCTCAAAGTTTGGATGAGCTACTATTAGAGATAGTTCCACATTCTAGGCCATGCTCTTGAAGTTTTAAGATATCGTTCTGGCAATTTAGATAAAAACTCTAGATTATCGGATTCTAGGCCACCAATTCTAGGCTACGAAGTTTTGAAAATTAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>128 117 85 82 81 79 71 55 53 33 31 30 24 24 20 19 18 17 12 8 7 3 3</canonical_bands>
                <polymorphic_bands>128 117 85 82 81 79 74 55 53 33 31 30 24 24 20 19 18 17 12 8 7 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTTTCCATATCATTTGCATAC</pcr_primer_p1>
		<pcr_primer_p2>TCTCTCACTCCTCTATGACCTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTTTCCATATCATTTGCATACTGTATAAAACTTCAGATCATCAGAAAAATGGAAGAAGAAAATCCTAGTCCACCGCCCACGGGATCCGAATCGTCACAACCGTCGTCACCACTGAGGGCAGATTTCGATACTAAAATTCATTTGACCTACTCTACAGACGATGATAAGATTGAAGGTTAGTGGGTACTGTAGATAAGGTGGCCTGGAAATAGAGGAGTGAGAGAGTTAGGTCATAGAGGAGTGAGAGA</canonical_amplicon>
		<polymorphic_amplicon>CTTTTTCCATATCATTTGCATACTGTATAAAACTTCAGATCATCAGAAAAATGGAAGAAGAAAATCCTAGTCCACCGCCCACGGGATCCGAATCGTCACAACCGTCGTCACCRCTGAGGGCAGATTTCGATACTAAAATTCATTTGACCTACTCTACAGACGATGATAAGATTGAAGGTTAGTGGGTACTGTAGATAAGGTGGCCTGGAAATAGAGGAGTGAGAGAGTTAGGTCATAGAGGAGTGAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13010</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>84011</contig_pos>
        <strand>+</strand>
        <context>GCTTGTWTCT[C/G]TGCAGAATAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTGAGAGTCTCAAGCTGACCGATGGGTTGGCGGTCGGTGGGCTTGTATCT</left_flank>
        <right_flank>TGCAGAATATTATGCTAGAAATTTTCTTCAAATCTGTTTAAAAACCAACT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCCTCTCAACCTTCTCGCCAATCCTTCGCCAGCTCATCGACGATGCCACGTCATCATCCTCGCCCACATCTTCGTCTTCCACGTCATCAGAATCTTCTTCAGATGAATGTTTCACCTCGATCAAACTCGATCTTTCGATATTCCCCAATGCTCTATGCGCCTTTAAAGTCATTCTCGACGCCATGTATTCTGGTGATATCAAAATGGCGGGTATCGTCCAACCGAACGAGGTAAGGAGTTGGAAAAACAAACATGGGGAATTTTTTGTGGGGGTTAATATTATATGGTACTGTAGAAAGGAAAAACATGACATGATAACAAAAAAAGAACTATTATTTTCAAGTTGGACAGGTTGGAAATGAGTGGGAGTAGTAGAAGATCATTCGAGAACGAACTATAAATTCAGAATTCGTCATGGATCCACGTGATATAGTGTTTATTAATAGAATTGAGAGTCTCAAGCTGACCGATGGGTTGGCGGTCGGTGGGCTTGTATCTGTGCAGAATATTATGCTAGAAATTTTCTTCAAATCTGTTTAAAAACCAACTTTCTAGCTTATCTAGAAGCTGAGATACACCCTTTTAAAGTTTCGCACGATAGAGACGCAGACAACGAGACACACTGCGTCTCTAACCTCCCAAACTTCAAATTACTGTATTTCGGCTTCTAGAAGGGCTAGAAAGTTGGTTTTTTGATAGAATTGCAGCAAATTTTTGGTTCTATAAGGTCCTAATAGTAAGCAAAAATCAAGAAAAATCAAGTTTCTAGCTGACCGATAGTCGACGGAATAAATGCACTTTGGCAGCATTTGAATAGTGCGTCGTAAAATAATTGCTACGGACGCAAACACTCTGGCATGTTGACGCGAAAATGCACAAATTCGGTCGGCAGGCCGGCTAAATTTCCAGACCAAATCACCTCCAAAACTTTCCAGATTCTCGCTATCTGTCAATTCTGTCAAATATCATTTCTGGACCAGAAGATTATCTCTCTAGCAT</canonical>
            <polymorphic>GTCCTCTCAACCTTCTCGCCAATCCTTCGCCAGCTCATCGACGATGCCACGTCATCATCCTCGCCCACATCTTCGTCTTCCACGTCATCAGAATCTTCTTCAGATGAATGTTTCACCTCGATCAAACTCGATCTTTCGATATTCCCCAATGCTCTATGCGCCTTTAAAGTCATTCTCGACGCCATGTATTCTGGTGATATCAAAATGGCGGGTATCGTCCAACCGAACGAGGTAAGGAGTTGGAAAAACAAACATGGGGAATTTTTTGTGGGGGTTAATATTATATGGTACTGTAGAAAGGAAAAACATGACATGATAACAAAAAAAGAACTATTATTTTCAAGTTGGACAGGTTGGAAATGAGTGGGAGTAGTAGAAGATCATTCGAGAACGAACTATAAATTCAGAATTCGTCATGGATCCACGTGATATAGTGTTTATTAATAGAATTGAGAGTCTCAAGCTGACCGATGGGTTGGCGGTCGGTGGGCTTGTATCTSTGCAGAATATTATGCTAGAAATTTTCTTCAAATCTGTTTAAAAACCAACTTTCTAGCTTATCTAGAAGCTGAGATACACCCTTTTAAAGTTTCGCACGATAGAGACGCAGACAACGAGACACACTGCGTCTCTAACCTCCCAAACTTCAAATTACTGTATTTCGGCTTCTAGAAGGGCTAGAAAGTTGGTTTTTTGATAGAATTGCAGCAAATTTTTGGTTCTATAAGGTCCTAATAGTAAGCAAAAATCAAGAAAAATCAAGTTTCTAGCTGACCGATAGTCGACGGAATAAATGCACTTTGGCAGCATTTGAATAGTGCGTCGTAAAATAATTGCTACGGACGCAAACACTCTGGCATGTTGACGCGAAAATGCACAAATTCGGTCGGCAGGCCGGCTAAATTTCCAGACCAAATCACCTCCAAAACTTTCCAGATTCTCGCTATCTGTCAATTCTGTCAAATATCATTTCTGGACCAGAAGATTATCTCTCTAGCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>175 96 81 81 76 74 58 52 49 42 33 31 26 25 22 18 18 15 14 8 4 2</canonical_bands>
                <polymorphic_bands>175 96 90 81 81 74 58 52 49 42 33 31 26 25 22 18 18 15 8 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATCCACGTGATATAGTGTTTA</pcr_primer_p1>
		<pcr_primer_p2>CTGCCAAAGTGCATTTATTC</pcr_primer_p2>
		<pcr_amplicon_size>390</pcr_amplicon_size>
		<canonical_amplicon>GGATCCACGTGATATAGTGTTTATTAATAGAATTGAGAGTCTCAAGCTGACCGATGGGTTGGCGGTCGGTGGGCTTGTATCTGTGCAGAATATTATGCTAGAAATTTTCTTCAAATCTGTTTAAAAACCAACTTTCTAGCTTATCTAGAAGCTGAGATACACCCTTTTAAAGTTTCGCACGATAGAGACGCAGACAACGAGACACACTGCGTCTCTAACCTCCCAAACTTCAAATTACTGTATTTCGGCTTCTAGAAGGGCTAGAAAGTTGGTTTTTTGATAGAATTGCAGCAAATTTTTGGTTCTATAAGGTCCTAATAGTAAGCAAAAATCAAGAAAAATCAAGTTTCTAGCTGACCGATAGTCGACGGAATAAATGCACTTTGGCAG</canonical_amplicon>
		<polymorphic_amplicon>GGATCCACGTGATATAGTGTTTATTAATAGAATTGAGAGTCTCAAGCTGACCGATGGGTTGGCGGTCGGTGGGCTTGTATCTSTGCAGAATATTATGCTAGAAATTTTCTTCAAATCTGTTTAAAAACCAACTTTCTAGCTTATCTAGAAGCTGAGATACACCCTTTTAAAGTTTCGCACGATAGAGACGCAGACAACGAGACACACTGCGTCTCTAACCTCCCAAACTTCAAATTACTGTATTTCGGCTTCTAGAAGGGCTAGAAAGTTGGTTTTTTGATAGAATTGCAGCAAATTTTTGGTTCTATAAGGTCCTAATAGTAAGCAAAAATCAAGAAAAATCAAGTTTCTAGCTGACCGATAGTCGACGGAATAAATGCACTTTGGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13011</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>84007</contig_pos>
        <strand>+</strand>
        <context>GTGGGCTTGT[A/T]TCTSTGCAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAATTGAGAGTCTCAAGCTGACCGATGGGTTGGCGGTCGGTGGGCTTGT</left_flank>
        <right_flank>TCTGTGCAGAATATTATGCTAGAAATTTTCTTCAAATCTGTTTAAAAACC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAGTCCTCTCAACCTTCTCGCCAATCCTTCGCCAGCTCATCGACGATGCCACGTCATCATCCTCGCCCACATCTTCGTCTTCCACGTCATCAGAATCTTCTTCAGATGAATGTTTCACCTCGATCAAACTCGATCTTTCGATATTCCCCAATGCTCTATGCGCCTTTAAAGTCATTCTCGACGCCATGTATTCTGGTGATATCAAAATGGCGGGTATCGTCCAACCGAACGAGGTAAGGAGTTGGAAAAACAAACATGGGGAATTTTTTGTGGGGGTTAATATTATATGGTACTGTAGAAAGGAAAAACATGACATGATAACAAAAAAAGAACTATTATTTTCAAGTTGGACAGGTTGGAAATGAGTGGGAGTAGTAGAAGATCATTCGAGAACGAACTATAAATTCAGAATTCGTCATGGATCCACGTGATATAGTGTTTATTAATAGAATTGAGAGTCTCAAGCTGACCGATGGGTTGGCGGTCGGTGGGCTTGTATCTGTGCAGAATATTATGCTAGAAATTTTCTTCAAATCTGTTTAAAAACCAACTTTCTAGCTTATCTAGAAGCTGAGATACACCCTTTTAAAGTTTCGCACGATAGAGACGCAGACAACGAGACACACTGCGTCTCTAACCTCCCAAACTTCAAATTACTGTATTTCGGCTTCTAGAAGGGCTAGAAAGTTGGTTTTTTGATAGAATTGCAGCAAATTTTTGGTTCTATAAGGTCCTAATAGTAAGCAAAAATCAAGAAAAATCAAGTTTCTAGCTGACCGATAGTCGACGGAATAAATGCACTTTGGCAGCATTTGAATAGTGCGTCGTAAAATAATTGCTACGGACGCAAACACTCTGGCATGTTGACGCGAAAATGCACAAATTCGGTCGGCAGGCCGGCTAAATTTCCAGACCAAATCACCTCCAAAACTTTCCAGATTCTCGCTATCTGTCAATTCTGTCAAATATCATTTCTGGACCAGAAGATTATCTCTCTA</canonical>
            <polymorphic>AACAGTCCTCTCAACCTTCTCGCCAATCCTTCGCCAGCTCATCGACGATGCCACGTCATCATCCTCGCCCACATCTTCGTCTTCCACGTCATCAGAATCTTCTTCAGATGAATGTTTCACCTCGATCAAACTCGATCTTTCGATATTCCCCAATGCTCTATGCGCCTTTAAAGTCATTCTCGACGCCATGTATTCTGGTGATATCAAAATGGCGGGTATCGTCCAACCGAACGAGGTAAGGAGTTGGAAAAACAAACATGGGGAATTTTTTGTGGGGGTTAATATTATATGGTACTGTAGAAAGGAAAAACATGACATGATAACAAAAAAAGAACTATTATTTTCAAGTTGGACAGGTTGGAAATGAGTGGGAGTAGTAGAAGATCATTCGAGAACGAACTATAAATTCAGAATTCGTCATGGATCCACGTGATATAGTGTTTATTAATAGAATTGAGAGTCTCAAGCTGACCGATGGGTTGGCGGTCGGTGGGCTTGTWTCTGTGCAGAATATTATGCTAGAAATTTTCTTCAAATCTGTTTAAAAACCAACTTTCTAGCTTATCTAGAAGCTGAGATACACCCTTTTAAAGTTTCGCACGATAGAGACGCAGACAACGAGACACACTGCGTCTCTAACCTCCCAAACTTCAAATTACTGTATTTCGGCTTCTAGAAGGGCTAGAAAGTTGGTTTTTTGATAGAATTGCAGCAAATTTTTGGTTCTATAAGGTCCTAATAGTAAGCAAAAATCAAGAAAAATCAAGTTTCTAGCTGACCGATAGTCGACGGAATAAATGCACTTTGGCAGCATTTGAATAGTGCGTCGTAAAATAATTGCTACGGACGCAAACACTCTGGCATGTTGACGCGAAAATGCACAAATTCGGTCGGCAGGCCGGCTAAATTTCCAGACCAAATCACCTCCAAAACTTTCCAGATTCTCGCTATCTGTCAATTCTGTCAAATATCATTTCTGGACCAGAAGATTATCTCTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATCCACGTGATATAGTGTTTA</pcr_primer_p1>
		<pcr_primer_p2>CTGCCAAAGTGCATTTATTC</pcr_primer_p2>
		<pcr_amplicon_size>390</pcr_amplicon_size>
		<canonical_amplicon>GGATCCACGTGATATAGTGTTTATTAATAGAATTGAGAGTCTCAAGCTGACCGATGGGTTGGCGGTCGGTGGGCTTGTATCTGTGCAGAATATTATGCTAGAAATTTTCTTCAAATCTGTTTAAAAACCAACTTTCTAGCTTATCTAGAAGCTGAGATACACCCTTTTAAAGTTTCGCACGATAGAGACGCAGACAACGAGACACACTGCGTCTCTAACCTCCCAAACTTCAAATTACTGTATTTCGGCTTCTAGAAGGGCTAGAAAGTTGGTTTTTTGATAGAATTGCAGCAAATTTTTGGTTCTATAAGGTCCTAATAGTAAGCAAAAATCAAGAAAAATCAAGTTTCTAGCTGACCGATAGTCGACGGAATAAATGCACTTTGGCAG</canonical_amplicon>
		<polymorphic_amplicon>GGATCCACGTGATATAGTGTTTATTAATAGAATTGAGAGTCTCAAGCTGACCGATGGGTTGGCGGTCGGTGGGCTTGTWTCTGTGCAGAATATTATGCTAGAAATTTTCTTCAAATCTGTTTAAAAACCAACTTTCTAGCTTATCTAGAAGCTGAGATACACCCTTTTAAAGTTTCGCACGATAGAGACGCAGACAACGAGACACACTGCGTCTCTAACCTCCCAAACTTCAAATTACTGTATTTCGGCTTCTAGAAGGGCTAGAAAGTTGGTTTTTTGATAGAATTGCAGCAAATTTTTGGTTCTATAAGGTCCTAATAGTAAGCAAAAATCAAGAAAAATCAAGTTTCTAGCTGACCGATAGTCGACGGAATAAATGCACTTTGGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13012</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>83953</contig_pos>
        <strand>+</strand>
        <context>TAGTGTTTAY[C/T]AATAGAATTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAACTATAAATTCAGAATTCGTCATGGATCCACGTGATATAGTGTTTAT</left_flank>
        <right_flank>AATAGAATTGAGAGTCTCAAGCTGACCGATGGGTTGGCGGTCGGTGGGCT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTCAAAAATTTGAAAATTGTTAACTTTCAGAAGAAGTCCTATTCGGTCACCGAACAGTCCTCTCAACCTTCTCGCCAATCCTTCGCCAGCTCATCGACGATGCCACGTCATCATCCTCGCCCACATCTTCGTCTTCCACGTCATCAGAATCTTCTTCAGATGAATGTTTCACCTCGATCAAACTCGATCTTTCGATATTCCCCAATGCTCTATGCGCCTTTAAAGTCATTCTCGACGCCATGTATTCTGGTGATATCAAAATGGCGGGTATCGTCCAACCGAACGAGGTAAGGAGTTGGAAAAACAAACATGGGGAATTTTTTGTGGGGGTTAATATTATATGGTACTGTAGAAAGGAAAAACATGACATGATAACAAAAAAAGAACTATTATTTTCAAGTTGGACAGGTTGGAAATGAGTGGGAGTAGTAGAAGATCATTCGAGAACGAACTATAAATTCAGAATTCGTCATGGATCCACGTGATATAGTGTTTATTAATAGAATTGAGAGTCTCAAGCTGACCGATGGGTTGGCGGTCGGTGGGCTTGTATCTGTGCAGAATATTATGCTAGAAATTTTCTTCAAATCTGTTTAAAAACCAACTTTCTAGCTTATCTAGAAGCTGAGATACACCCTTTTAAAGTTTCGCACGATAGAGACGCAGACAACGAGACACACTGCGTCTCTAACCTCCCAAACTTCAAATTACTGTATTTCGGCTTCTAGAAGGGCTAGAAAGTTGGTTTTTTGATAGAATTGCAGCAAATTTTTGGTTCTATAAGGTCCTAATAGTAAGCAAAAATCAAGAAAAATCAAGTTTCTAGCTGACCGATAGTCGACGGAATAAATGCACTTTGGCAGCATTTGAATAGTGCGTCGTAAAATAATTGCTACGGACGCAAACACTCTGGCATGTTGACGCGAAAATGCACAAATTCGGTCGGCAGGCCGGCTAAATTTCCAGACCAAATCACCTCCAAAACTTTCCAGATTCTC</canonical>
            <polymorphic>TTCTCAAAAATTTGAAAATTGTTAACTTTCAGAAGAAGTCCTATTCGGTCACCGAACAGTCCTCTCAACCTTCTCGCCAATCCTTCGCCAGCTCATCGACGATGCCACGTCATCATCCTCGCCCACATCTTCGTCTTCCACGTCATCAGAATCTTCTTCAGATGAATGTTTCACCTCGATCAAACTCGATCTTTCGATATTCCCCAATGCTCTATGCGCCTTTAAAGTCATTCTCGACGCCATGTATTCTGGTGATATCAAAATGGCGGGTATCGTCCAACCGAACGAGGTAAGGAGTTGGAAAAACAAACATGGGGAATTTTTTGTGGGGGTTAATATTATATGGTACTGTAGAAAGGAAAAACATGACATGATAACAAAAAAAGAACTATTATTTTCAAGTTGGACAGGTTGGAAATGAGTGGGAGTAGTAGAAGATCATTCGAGAACGAACTATAAATTCAGAATTCGTCATGGATCCACGTGATATAGTGTTTATYAATAGAATTGAGAGTCTCAAGCTGACCGATGGGTTGGCGGTCGGTGGGCTTGTATCTGTGCAGAATATTATGCTAGAAATTTTCTTCAAATCTGTTTAAAAACCAACTTTCTAGCTTATCTAGAAGCTGAGATACACCCTTTTAAAGTTTCGCACGATAGAGACGCAGACAACGAGACACACTGCGTCTCTAACCTCCCAAACTTCAAATTACTGTATTTCGGCTTCTAGAAGGGCTAGAAAGTTGGTTTTTTGATAGAATTGCAGCAAATTTTTGGTTCTATAAGGTCCTAATAGTAAGCAAAAATCAAGAAAAATCAAGTTTCTAGCTGACCGATAGTCGACGGAATAAATGCACTTTGGCAGCATTTGAATAGTGCGTCGTAAAATAATTGCTACGGACGCAAACACTCTGGCATGTTGACGCGAAAATGCACAAATTCGGTCGGCAGGCCGGCTAAATTTCCAGACCAAATCACCTCCAAAACTTTCCAGATTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>358 200 166 111 97 46 22</canonical_bands>
                <polymorphic_bands>358 263 200 111 46 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCATTCGAGAACGAACTATAAA</pcr_primer_p1>
		<pcr_primer_p2>CTGCCAAAGTGCATTTATTC</pcr_primer_p2>
		<pcr_amplicon_size>428</pcr_amplicon_size>
		<canonical_amplicon>ATCATTCGAGAACGAACTATAAATTCAGAATTCGTCATGGATCCACGTGATATAGTGTTTATTAATAGAATTGAGAGTCTCAAGCTGACCGATGGGTTGGCGGTCGGTGGGCTTGTATCTGTGCAGAATATTATGCTAGAAATTTTCTTCAAATCTGTTTAAAAACCAACTTTCTAGCTTATCTAGAAGCTGAGATACACCCTTTTAAAGTTTCGCACGATAGAGACGCAGACAACGAGACACACTGCGTCTCTAACCTCCCAAACTTCAAATTACTGTATTTCGGCTTCTAGAAGGGCTAGAAAGTTGGTTTTTTGATAGAATTGCAGCAAATTTTTGGTTCTATAAGGTCCTAATAGTAAGCAAAAATCAAGAAAAATCAAGTTTCTAGCTGACCGATAGTCGACGGAATAAATGCACTTTGGCAG</canonical_amplicon>
		<polymorphic_amplicon>ATCATTCGAGAACGAACTATAAATTCAGAATTCGTCATGGATCCACGTGATATAGTGTTTATYAATAGAATTGAGAGTCTCAAGCTGACCGATGGGTTGGCGGTCGGTGGGCTTGTATCTGTGCAGAATATTATGCTAGAAATTTTCTTCAAATCTGTTTAAAAACCAACTTTCTAGCTTATCTAGAAGCTGAGATACACCCTTTTAAAGTTTCGCACGATAGAGACGCAGACAACGAGACACACTGCGTCTCTAACCTCCCAAACTTCAAATTACTGTATTTCGGCTTCTAGAAGGGCTAGAAAGTTGGTTTTTTGATAGAATTGCAGCAAATTTTTGGTTCTATAAGGTCCTAATAGTAAGCAAAAATCAAGAAAAATCAAGTTTCTAGCTGACCGATAGTCGACGGAATAAATGCACTTTGGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13013</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>83952</contig_pos>
        <strand>+</strand>
        <context>ATAGTGTTTA[C/T]YAATAGAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGAACTATAAATTCAGAATTCGTCATGGATCCACGTGATATAGTGTTTA</left_flank>
        <right_flank>TAATAGAATTGAGAGTCTCAAGCTGACCGATGGGTTGGCGGTCGGTGGGC</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTCAAAAATTTGAAAATTGTTAACTTTCAGAAGAAGTCCTATTCGGTCACCGAACAGTCCTCTCAACCTTCTCGCCAATCCTTCGCCAGCTCATCGACGATGCCACGTCATCATCCTCGCCCACATCTTCGTCTTCCACGTCATCAGAATCTTCTTCAGATGAATGTTTCACCTCGATCAAACTCGATCTTTCGATATTCCCCAATGCTCTATGCGCCTTTAAAGTCATTCTCGACGCCATGTATTCTGGTGATATCAAAATGGCGGGTATCGTCCAACCGAACGAGGTAAGGAGTTGGAAAAACAAACATGGGGAATTTTTTGTGGGGGTTAATATTATATGGTACTGTAGAAAGGAAAAACATGACATGATAACAAAAAAAGAACTATTATTTTCAAGTTGGACAGGTTGGAAATGAGTGGGAGTAGTAGAAGATCATTCGAGAACGAACTATAAATTCAGAATTCGTCATGGATCCACGTGATATAGTGTTTATTAATAGAATTGAGAGTCTCAAGCTGACCGATGGGTTGGCGGTCGGTGGGCTTGTATCTGTGCAGAATATTATGCTAGAAATTTTCTTCAAATCTGTTTAAAAACCAACTTTCTAGCTTATCTAGAAGCTGAGATACACCCTTTTAAAGTTTCGCACGATAGAGACGCAGACAACGAGACACACTGCGTCTCTAACCTCCCAAACTTCAAATTACTGTATTTCGGCTTCTAGAAGGGCTAGAAAGTTGGTTTTTTGATAGAATTGCAGCAAATTTTTGGTTCTATAAGGTCCTAATAGTAAGCAAAAATCAAGAAAAATCAAGTTTCTAGCTGACCGATAGTCGACGGAATAAATGCACTTTGGCAGCATTTGAATAGTGCGTCGTAAAATAATTGCTACGGACGCAAACACTCTGGCATGTTGACGCGAAAATGCACAAATTCGGTCGGCAGGCCGGCTAAATTTCCAGACCAAATCACCTCCAAAACTTTCCAGATTCT</canonical>
            <polymorphic>TTTCTCAAAAATTTGAAAATTGTTAACTTTCAGAAGAAGTCCTATTCGGTCACCGAACAGTCCTCTCAACCTTCTCGCCAATCCTTCGCCAGCTCATCGACGATGCCACGTCATCATCCTCGCCCACATCTTCGTCTTCCACGTCATCAGAATCTTCTTCAGATGAATGTTTCACCTCGATCAAACTCGATCTTTCGATATTCCCCAATGCTCTATGCGCCTTTAAAGTCATTCTCGACGCCATGTATTCTGGTGATATCAAAATGGCGGGTATCGTCCAACCGAACGAGGTAAGGAGTTGGAAAAACAAACATGGGGAATTTTTTGTGGGGGTTAATATTATATGGTACTGTAGAAAGGAAAAACATGACATGATAACAAAAAAAGAACTATTATTTTCAAGTTGGACAGGTTGGAAATGAGTGGGAGTAGTAGAAGATCATTCGAGAACGAACTATAAATTCAGAATTCGTCATGGATCCACGTGATATAGTGTTTAYTAATAGAATTGAGAGTCTCAAGCTGACCGATGGGTTGGCGGTCGGTGGGCTTGTATCTGTGCAGAATATTATGCTAGAAATTTTCTTCAAATCTGTTTAAAAACCAACTTTCTAGCTTATCTAGAAGCTGAGATACACCCTTTTAAAGTTTCGCACGATAGAGACGCAGACAACGAGACACACTGCGTCTCTAACCTCCCAAACTTCAAATTACTGTATTTCGGCTTCTAGAAGGGCTAGAAAGTTGGTTTTTTGATAGAATTGCAGCAAATTTTTGGTTCTATAAGGTCCTAATAGTAAGCAAAAATCAAGAAAAATCAAGTTTCTAGCTGACCGATAGTCGACGGAATAAATGCACTTTGGCAGCATTTGAATAGTGCGTCGTAAAATAATTGCTACGGACGCAAACACTCTGGCATGTTGACGCGAAAATGCACAAATTCGGTCGGCAGGCCGGCTAAATTTCCAGACCAAATCACCTCCAAAACTTTCCAGATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>357 200 166 111 97 46 23</canonical_bands>
                <polymorphic_bands>357 263 200 111 46 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCATTCGAGAACGAACTATAAA</pcr_primer_p1>
		<pcr_primer_p2>CTGCCAAAGTGCATTTATTC</pcr_primer_p2>
		<pcr_amplicon_size>428</pcr_amplicon_size>
		<canonical_amplicon>ATCATTCGAGAACGAACTATAAATTCAGAATTCGTCATGGATCCACGTGATATAGTGTTTATTAATAGAATTGAGAGTCTCAAGCTGACCGATGGGTTGGCGGTCGGTGGGCTTGTATCTGTGCAGAATATTATGCTAGAAATTTTCTTCAAATCTGTTTAAAAACCAACTTTCTAGCTTATCTAGAAGCTGAGATACACCCTTTTAAAGTTTCGCACGATAGAGACGCAGACAACGAGACACACTGCGTCTCTAACCTCCCAAACTTCAAATTACTGTATTTCGGCTTCTAGAAGGGCTAGAAAGTTGGTTTTTTGATAGAATTGCAGCAAATTTTTGGTTCTATAAGGTCCTAATAGTAAGCAAAAATCAAGAAAAATCAAGTTTCTAGCTGACCGATAGTCGACGGAATAAATGCACTTTGGCAG</canonical_amplicon>
		<polymorphic_amplicon>ATCATTCGAGAACGAACTATAAATTCAGAATTCGTCATGGATCCACGTGATATAGTGTTTAYTAATAGAATTGAGAGTCTCAAGCTGACCGATGGGTTGGCGGTCGGTGGGCTTGTATCTGTGCAGAATATTATGCTAGAAATTTTCTTCAAATCTGTTTAAAAACCAACTTTCTAGCTTATCTAGAAGCTGAGATACACCCTTTTAAAGTTTCGCACGATAGAGACGCAGACAACGAGACACACTGCGTCTCTAACCTCCCAAACTTCAAATTACTGTATTTCGGCTTCTAGAAGGGCTAGAAAGTTGGTTTTTTGATAGAATTGCAGCAAATTTTTGGTTCTATAAGGTCCTAATAGTAAGCAAAAATCAAGAAAAATCAAGTTTCTAGCTGACCGATAGTCGACGGAATAAATGCACTTTGGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13014</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>109984</contig_pos>
        <strand>+</strand>
        <context>ATCGATTGCC[C/T]TTCTTTTTGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTGGAAGTGACCCGTTGGAGCTGCTTTGTCTCTCTTCGCATCGATTGCC</left_flank>
        <right_flank>TTCTTTTTGCAGCTAAGCGACACCGACACGAACGTCTTCATGGAGATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTGAAAGATTTTGAGAGAAAAGAAATTTGAAGTCCTGGGGAAGTTTTAAGGAGGGAATCAGGCATTTCTAACTGAAAAAATAGCAATTTCAGACTCCAAAAATATATCTAGATCGAACATCGGAGAAAAAACTGAAAAAATTTGGTGGATTTGAGCTTTCAAAAGTTTTTGAAAAGCCGGAATTCAAACGATGAAGCCCCGCGCCCAGAAGGTACGATAAGCAAAAGTCCGCAATTCTAGACATGGTGTAGCTGCGTACAATGCGCACCCTCCACTGTCGACCGTATCTTGCCTTTTTAAACGTTGCTTTAGAGGGGAAATAATAAAATACACCAATTTCACATACATTATTATCGTCCCCCCTCTCTGCACCTCTCTCTGTACAAATATACAACACAGCAGAAATTTCATAATCGGTGTGTTTAAATGGGGGAATTTGAATATATGTGGAAGTGACCCGTTGGAGCTGCTTTGTCTCTCTTCGCATCGATTGCCCTTCTTTTTGCAGCTAAGCGACACCGACACGAACGTCTTCATGGAGATTTTTTTCCGAAGGCGAAAATAGCAAAAAAAAATATGCGAGTGCTTTTCCATCTATGCTCAATCATCTTCCTGCTGCTTTTCTTTGCTTCAGGCACCTACAGTAGTACGCCAGGCTTTCCAAATGCAAGTTTAAAAAAAAGAGCAATTTGAAGAATTCGCATTTTTCAGGAAGAAGAAATTTTCGACGAGGACATTCAAGACACAGTTTTAGCGTCAACTATCGATGGTCGTCTGAGAGCGCTTGATGCGAAAACTGGAAAAATAAAATGGACACTAGAGGAAGGTTAGAATTTTAAAAAACTATAAAAAGAATCAGAAGAAGCTCCAAACTTGCTTTTTATGCTAAAAGAGTTTTTCGAAATCTCCAAAACTACAAACTACAAAATCTCCAGAACCCGTCCTTCGTTCTCCATCAGCCATCAAACAGGGATTCACATTTCTACCGAACCCACT</canonical>
            <polymorphic>TTTTTTGAAAGATTTTGAGAGAAAAGAAATTTGAAGTCCTGGGGAAGTTTTAAGGAGGGAATCAGGCATTTCTAACTGAAAAAATAGCAATTTCAGACTCCAAAAATATATCTAGATCGAACATCGGAGAAAAAACTGAAAAAATTTGGTGGATTTGAGCTTTCAAAAGTTTTTGAAAAGCCGGAATTCAAACGATGAAGCCCCGCGCCCAGAAGGTACGATAAGCAAAAGTCCGCAATTCTAGACATGGTGTAGCTGCGTACAATGCGCACCCTCCACTGTCGACCGTATCTTGCCTTTTTAAACGTTGCTTTAGAGGGGAAATAATAAAATACACCAATTTCACATACATTATTATCGTCCCCCCTCTCTGCACCTCTCTCTGTACAAATATACAACACAGCAGAAATTTCATAATCGGTGTGTTTAAATGGGGGAATTTGAATATATGTGGAAGTGACCCGTTGGAGCTGCTTTGTCTCTCTTCGCATCGATTGCCYTTCTTTTTGCAGCTAAGCGACACCGACACGAACGTCTTCATGGAGATTTTTTTCCGAAGGCGAAAATAGCAAAAAAAAATATGCGAGTGCTTTTCCATCTATGCTCAATCATCTTCCTGCTGCTTTTCTTTGCTTCAGGCACCTACAGTAGTACGCCAGGCTTTCCAAATGCAAGTTTAAAAAAAAGAGCAATTTGAAGAATTCGCATTTTTCAGGAAGAAGAAATTTTCGACGAGGACATTCAAGACACAGTTTTAGCGTCAACTATCGATGGTCGTCTGAGAGCGCTTGATGCGAAAACTGGAAAAATAAAATGGACACTAGAGGAAGGTTAGAATTTTAAAAAACTATAAAAAGAATCAGAAGAAGCTCCAAACTTGCTTTTTATGCTAAAAGAGTTTTTCGAAATCTCCAAAACTACAAACTACAAAATCTCCAGAACCCGTCCTTCGTTCTCCATCAGCCATCAAACAGGGATTCACATTTCTACCGAACCCACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAATATACAACACAGCAGAAA</pcr_primer_p1>
		<pcr_primer_p2>AAGAAAAGCAGCAGGAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACAAATATACAACACAGCAGAAATTTCATAATCGGTGTGTTTAAATGGGGGAATTTGAATATATGTGGAAGTGACCCGTTGGAGCTGCTTTGTCTCTCTTCGCATCGATTGCCCTTCTTTTTGCAGCTAAGCGACACCGACACGAACGTCTTCATGGAGATTTTTTTCCGAAGGCGAAAATAGCAAAAAAAAATATGCGAGTGCTTTTCCATCTATGCTCAATCATCTTCCTGCTGCTTTTCTT</canonical_amplicon>
		<polymorphic_amplicon>ACAAATATACAACACAGCAGAAATTTCATAATCGGTGTGTTTAAATGGGGGAATTTGAATATATGTGGAAGTGACCCGTTGGAGCTGCTTTGTCTCTCTTCGCATCGATTGCCYTTCTTTTTGCAGCTAAGCGACACCGACACGAACGTCTTCATGGAGATTTTTTTCCGAAGGCGAAAATAGCAAAAAAAAATATGCGAGTGCTTTTCCATCTATGCTCAATCATCTTCCTGCTGCTTTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13015</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>110162</contig_pos>
        <strand>+</strand>
        <context>AATGCAAGTT[A/T]AAAAAAAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTTGCTTCAGGCACCTACAGTAGTACGCCAGGCTTTCCAAATGCAAGTT</left_flank>
        <right_flank>AAAAAAAAGAGCAATTTGAAGAATTCGCATTTTTCAGGAAGAAGAAATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCCGGAATTCAAACGATGAAGCCCCGCGCCCAGAAGGTACGATAAGCAAAAGTCCGCAATTCTAGACATGGTGTAGCTGCGTACAATGCGCACCCTCCACTGTCGACCGTATCTTGCCTTTTTAAACGTTGCTTTAGAGGGGAAATAATAAAATACACCAATTTCACATACATTATTATCGTCCCCCCTCTCTGCACCTCTCTCTGTACAAATATACAACACAGCAGAAATTTCATAATCGGTGTGTTTAAATGGGGGAATTTGAATATATGTGGAAGTGACCCGTTGGAGCTGCTTTGTCTCTCTTCGCATCGATTGCCCTTCTTTTTGCAGCTAAGCGACACCGACACGAACGTCTTCATGGAGATTTTTTTCCGAAGGCGAAAATAGCAAAAAAAAATATGCGAGTGCTTTTCCATCTATGCTCAATCATCTTCCTGCTGCTTTTCTTTGCTTCAGGCACCTACAGTAGTACGCCAGGCTTTCCAAATGCAAGTTTAAAAAAAAGAGCAATTTGAAGAATTCGCATTTTTCAGGAAGAAGAAATTTTCGACGAGGACATTCAAGACACAGTTTTAGCGTCAACTATCGATGGTCGTCTGAGAGCGCTTGATGCGAAAACTGGAAAAATAAAATGGACACTAGAGGAAGGTTAGAATTTTAAAAAACTATAAAAAGAATCAGAAGAAGCTCCAAACTTGCTTTTTATGCTAAAAGAGTTTTTCGAAATCTCCAAAACTACAAACTACAAAATCTCCAGAACCCGTCCTTCGTTCTCCATCAGCCATCAAACAGGGATTCACATTTCTACCGAACCCACTCGACGGATCTCTTTACGTTTTGAAGAATAGCTCTCTCAAGAAACTGCCGTTCAATATTCCGCAATTGGTCCATGCGTCGCCCTGCCGAGGGACCGACGGAATTATGTATGCTGGAAGTAAGAAGGACGTTTGGTTTGGAATCGATCCGACGACGGGGTTGAAGGTACGATTTTTTTTC</canonical>
            <polymorphic>AGCCGGAATTCAAACGATGAAGCCCCGCGCCCAGAAGGTACGATAAGCAAAAGTCCGCAATTCTAGACATGGTGTAGCTGCGTACAATGCGCACCCTCCACTGTCGACCGTATCTTGCCTTTTTAAACGTTGCTTTAGAGGGGAAATAATAAAATACACCAATTTCACATACATTATTATCGTCCCCCCTCTCTGCACCTCTCTCTGTACAAATATACAACACAGCAGAAATTTCATAATCGGTGTGTTTAAATGGGGGAATTTGAATATATGTGGAAGTGACCCGTTGGAGCTGCTTTGTCTCTCTTCGCATCGATTGCCCTTCTTTTTGCAGCTAAGCGACACCGACACGAACGTCTTCATGGAGATTTTTTTCCGAAGGCGAAAATAGCAAAAAAAAATATGCGAGTGCTTTTCCATCTATGCTCAATCATCTTCCTGCTGCTTTTCTTTGCTTCAGGCACCTACAGTAGTACGCCAGGCTTTCCAAATGCAAGTTWAAAAAAAAGAGCAATTTGAAGAATTCGCATTTTTCAGGAAGAAGAAATTTTCGACGAGGACATTCAAGACACAGTTTTAGCGTCAACTATCGATGGTCGTCTGAGAGCGCTTGATGCGAAAACTGGAAAAATAAAATGGACACTAGAGGAAGGTTAGAATTTTAAAAAACTATAAAAAGAATCAGAAGAAGCTCCAAACTTGCTTTTTATGCTAAAAGAGTTTTTCGAAATCTCCAAAACTACAAACTACAAAATCTCCAGAACCCGTCCTTCGTTCTCCATCAGCCATCAAACAGGGATTCACATTTCTACCGAACCCACTCGACGGATCTCTTTACGTTTTGAAGAATAGCTCTCTCAAGAAACTGCCGTTCAATATTCCGCAATTGGTCCATGCGTCGCCCTGCCGAGGGACCGACGGAATTATGTATGCTGGAAGTAAGAAGGACGTTTGGTTTGGAATCGATCCGACGACGGGGTTGAAGGTACGATTTTTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>337 250 163 126 124</canonical_bands>
                <polymorphic_bands>413 337 126 124</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>338 250 163 126 123</canonical_bands>
                <polymorphic_bands>413 338 126 123</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTTTCCATCTATGCTCAAT</pcr_primer_p1>
		<pcr_primer_p2>ATTCTAACCTTCCTCTAGTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTTTTCCATCTATGCTCAATCATCTTCCTGCTGCTTTTCTTTGCTTCAGGCACCTACAGTAGTACGCCAGGCTTTCCAAATGCAAGTTTAAAAAAAAGAGCAATTTGAAGAATTCGCATTTTTCAGGAAGAAGAAATTTTCGACGAGGACATTCAAGACACAGTTTTAGCGTCAACTATCGATGGTCGTCTGAGAGCGCTTGATGCGAAAACTGGAAAAATAAAATGGACACTAGAGGAAGGTTAGAAT</canonical_amplicon>
		<polymorphic_amplicon>GCTTTTCCATCTATGCTCAATCATCTTCCTGCTGCTTTTCTTTGCTTCAGGCACCTACAGTAGTACGCCAGGCTTTCCAAATGCAAGTTWAAAAAAAAGAGCAATTTGAAGAATTCGCATTTTTCAGGAAGAAGAAATTTTCGACGAGGACATTCAAGACACAGTTTTAGCGTCAACTATCGATGGTCGTCTGAGAGCGCTTGATGCGAAAACTGGAAAAATAAAATGGACACTAGAGGAAGGTTAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13016</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>110209</contig_pos>
        <strand>+</strand>
        <context>GGAAGAAGAA[A/T]TTTTCGACGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTTAAAAAAAAGAGCAATTTGAAGAATTCGCATTTTTCAGGAAGAAGAA</left_flank>
        <right_flank>TTTTCGACGAGGACATTCAAGACACAGTTTTAGCGTCAACTATCGATGGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAAGTCCGCAATTCTAGACATGGTGTAGCTGCGTACAATGCGCACCCTCCACTGTCGACCGTATCTTGCCTTTTTAAACGTTGCTTTAGAGGGGAAATAATAAAATACACCAATTTCACATACATTATTATCGTCCCCCCTCTCTGCACCTCTCTCTGTACAAATATACAACACAGCAGAAATTTCATAATCGGTGTGTTTAAATGGGGGAATTTGAATATATGTGGAAGTGACCCGTTGGAGCTGCTTTGTCTCTCTTCGCATCGATTGCCCTTCTTTTTGCAGCTAAGCGACACCGACACGAACGTCTTCATGGAGATTTTTTTCCGAAGGCGAAAATAGCAAAAAAAAATATGCGAGTGCTTTTCCATCTATGCTCAATCATCTTCCTGCTGCTTTTCTTTGCTTCAGGCACCTACAGTAGTACGCCAGGCTTTCCAAATGCAAGTTTAAAAAAAAGAGCAATTTGAAGAATTCGCATTTTTCAGGAAGAAGAAATTTTCGACGAGGACATTCAAGACACAGTTTTAGCGTCAACTATCGATGGTCGTCTGAGAGCGCTTGATGCGAAAACTGGAAAAATAAAATGGACACTAGAGGAAGGTTAGAATTTTAAAAAACTATAAAAAGAATCAGAAGAAGCTCCAAACTTGCTTTTTATGCTAAAAGAGTTTTTCGAAATCTCCAAAACTACAAACTACAAAATCTCCAGAACCCGTCCTTCGTTCTCCATCAGCCATCAAACAGGGATTCACATTTCTACCGAACCCACTCGACGGATCTCTTTACGTTTTGAAGAATAGCTCTCTCAAGAAACTGCCGTTCAATATTCCGCAATTGGTCCATGCGTCGCCCTGCCGAGGGACCGACGGAATTATGTATGCTGGAAGTAAGAAGGACGTTTGGTTTGGAATCGATCCGACGACGGGGTTGAAGGTACGATTTTTTTTCTAATTTTGGAAGCCTGCAAATACGCTCCATTGACAATTTATAATTTT</canonical>
            <polymorphic>CAAAAGTCCGCAATTCTAGACATGGTGTAGCTGCGTACAATGCGCACCCTCCACTGTCGACCGTATCTTGCCTTTTTAAACGTTGCTTTAGAGGGGAAATAATAAAATACACCAATTTCACATACATTATTATCGTCCCCCCTCTCTGCACCTCTCTCTGTACAAATATACAACACAGCAGAAATTTCATAATCGGTGTGTTTAAATGGGGGAATTTGAATATATGTGGAAGTGACCCGTTGGAGCTGCTTTGTCTCTCTTCGCATCGATTGCCCTTCTTTTTGCAGCTAAGCGACACCGACACGAACGTCTTCATGGAGATTTTTTTCCGAAGGCGAAAATAGCAAAAAAAAATATGCGAGTGCTTTTCCATCTATGCTCAATCATCTTCCTGCTGCTTTTCTTTGCTTCAGGCACCTACAGTAGTACGCCAGGCTTTCCAAATGCAAGTTTAAAAAAAAGAGCAATTTGAAGAATTCGCATTTTTCAGGAAGAAGAAWTTTTCGACGAGGACATTCAAGACACAGTTTTAGCGTCAACTATCGATGGTCGTCTGAGAGCGCTTGATGCGAAAACTGGAAAAATAAAATGGACACTAGAGGAAGGTTAGAATTTTAAAAAACTATAAAAAGAATCAGAAGAAGCTCCAAACTTGCTTTTTATGCTAAAAGAGTTTTTCGAAATCTCCAAAACTACAAACTACAAAATCTCCAGAACCCGTCCTTCGTTCTCCATCAGCCATCAAACAGGGATTCACATTTCTACCGAACCCACTCGACGGATCTCTTTACGTTTTGAAGAATAGCTCTCTCAAGAAACTGCCGTTCAATATTCCGCAATTGGTCCATGCGTCGCCCTGCCGAGGGACCGACGGAATTATGTATGCTGGAAGTAAGAAGGACGTTTGGTTTGGAATCGATCCGACGACGGGGTTGAAGGTACGATTTTTTTTCTAATTTTGGAAGCCTGCAAATACGCTCCATTGACAATTTATAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>390 262 182 112 30 24</canonical_bands>
                <polymorphic_bands>390 262 182 136 30</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>253 227 112 102 80 69 37 33 30 24 11 9 7 6</canonical_bands>
                <polymorphic_bands>253 227 136 102 80 69 37 33 30 11 9 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTTTCCATCTATGCTCAAT</pcr_primer_p1>
		<pcr_primer_p2>ATTCTAACCTTCCTCTAGTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTTTTCCATCTATGCTCAATCATCTTCCTGCTGCTTTTCTTTGCTTCAGGCACCTACAGTAGTACGCCAGGCTTTCCAAATGCAAGTTTAAAAAAAAGAGCAATTTGAAGAATTCGCATTTTTCAGGAAGAAGAAATTTTCGACGAGGACATTCAAGACACAGTTTTAGCGTCAACTATCGATGGTCGTCTGAGAGCGCTTGATGCGAAAACTGGAAAAATAAAATGGACACTAGAGGAAGGTTAGAAT</canonical_amplicon>
		<polymorphic_amplicon>GCTTTTCCATCTATGCTCAATCATCTTCCTGCTGCTTTTCTTTGCTTCAGGCACCTACAGTAGTACGCCAGGCTTTCCAAATGCAAGTTTAAAAAAAAGAGCAATTTGAAGAATTCGCATTTTTCAGGAAGAAGAAWTTTTCGACGAGGACATTCAAGACACAGTTTTAGCGTCAACTATCGATGGTCGTCTGAGAGCGCTTGATGCGAAAACTGGAAAAATAAAATGGACACTAGAGGAAGGTTAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13017</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>110506</contig_pos>
        <strand>+</strand>
        <context>TTTACGTTTT[A/G]AAGAATAGCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGGGATTCACATTTCTACCGAACCCACTCGACGGATCTCTTTACGTTTT</left_flank>
        <right_flank>AAGAATAGCTCTCTCAAGAAACTGCCGTTCAATATTCCGCAATTGGTCCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGACACGAACGTCTTCATGGAGATTTTTTTCCGAAGGCGAAAATAGCAAAAAAAAATATGCGAGTGCTTTTCCATCTATGCTCAATCATCTTCCTGCTGCTTTTCTTTGCTTCAGGCACCTACAGTAGTACGCCAGGCTTTCCAAATGCAAGTTTAAAAAAAAGAGCAATTTGAAGAATTCGCATTTTTCAGGAAGAAGAAATTTTCGACGAGGACATTCAAGACACAGTTTTAGCGTCAACTATCGATGGTCGTCTGAGAGCGCTTGATGCGAAAACTGGAAAAATAAAATGGACACTAGAGGAAGGTTAGAATTTTAAAAAACTATAAAAAGAATCAGAAGAAGCTCCAAACTTGCTTTTTATGCTAAAAGAGTTTTTCGAAATCTCCAAAACTACAAACTACAAAATCTCCAGAACCCGTCCTTCGTTCTCCATCAGCCATCAAACAGGGATTCACATTTCTACCGAACCCACTCGACGGATCTCTTTACGTTTTGAAGAATAGCTCTCTCAAGAAACTGCCGTTCAATATTCCGCAATTGGTCCATGCGTCGCCCTGCCGAGGGACCGACGGAATTATGTATGCTGGAAGTAAGAAGGACGTTTGGTTTGGAATCGATCCGACGACGGGGTTGAAGGTACGATTTTTTTTCTAATTTTGGAAGCCTGCAAATACGCTCCATTGACAATTTATAATTTTTTTTCAAATTTCAAAATTTTGCAAAATCGCTCCATTGACAGTTCATCAAGATGTAGATTCCCATAGAAACAACAACAAAAAATTCAAAAAAATTGCAAATTGCTTAAAGATGCCAATTCAAAAATTCTAATAGGGTNNNNNNNNNNTGCATTCACAGTTATGTCGCGAAATGCTTTGAAATACATTTCGCGACGCTCATGCATTGAATTTCGAGGGCGCGGAAATGCATTTCAATACATATCTTCGCTACATGAATAACCCCATAATAATGCTGTAAATTTCAAAATTCTGAAAATC</canonical>
            <polymorphic>CCGACACGAACGTCTTCATGGAGATTTTTTTCCGAAGGCGAAAATAGCAAAAAAAAATATGCGAGTGCTTTTCCATCTATGCTCAATCATCTTCCTGCTGCTTTTCTTTGCTTCAGGCACCTACAGTAGTACGCCAGGCTTTCCAAATGCAAGTTTAAAAAAAAGAGCAATTTGAAGAATTCGCATTTTTCAGGAAGAAGAAATTTTCGACGAGGACATTCAAGACACAGTTTTAGCGTCAACTATCGATGGTCGTCTGAGAGCGCTTGATGCGAAAACTGGAAAAATAAAATGGACACTAGAGGAAGGTTAGAATTTTAAAAAACTATAAAAAGAATCAGAAGAAGCTCCAAACTTGCTTTTTATGCTAAAAGAGTTTTTCGAAATCTCCAAAACTACAAACTACAAAATCTCCAGAACCCGTCCTTCGTTCTCCATCAGCCATCAAACAGGGATTCACATTTCTACCGAACCCACTCGACGGATCTCTTTACGTTTTRAAGAATAGCTCTCTCAAGAAACTGCCGTTCAATATTCCGCAATTGGTCCATGCGTCGCCCTGCCGAGGGACCGACGGAATTATGTATGCTGGAAGTAAGAAGGACGTTTGGTTTGGAATCGATCCGACGACGGGGTTGAAGGTACGATTTTTTTTCTAATTTTGGAAGCCTGCAAATACGCTCCATTGACAATTTATAATTTTTTTTCAAATTTCAAAATTTTGCAAAATCGCTCCATTGACAGTTCATCAAGATGTAGATTCCCATAGAAACAACAACAAAAAATTCAAAAAAATTGCAAATTGCTTAAAGATGCCAATTCAAAAATTCTAATAGGGTNNNNNNNNNNTGCATTCACAGTTATGTCGCGAAATGCTTTGAAATACATTTCGCGACGCTCATGCATTGAATTTCGAGGGCGCGGAAATGCATTTCAATACATATCTTCGCTACATGAATAACCCCATAATAATGCTGTAAATTTCAAAATTCTGAAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTTTTTATGCTAAAAGAGTTT</pcr_primer_p1>
		<pcr_primer_p2>CCTTCTTACTTCCAGCATACATA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGCTTTTTATGCTAAAAGAGTTTTTCGAAATCTCCAAAACTACAAACTACAAAATCTCCAGAACCCGTCCTTCGTTCTCCATCAGCCATCAAACAGGGATTCACATTTCTACCGAACCCACTCGACGGATCTCTTTACGTTTTGAAGAATAGCTCTCTCAAGAAACTGCCGTTCAATATTCCGCAATTGGTCCATGCGTCGCCCTGCCGAGGGACCGACGGAATTATGTATGCTGGAAGTAAGAAGG</canonical_amplicon>
		<polymorphic_amplicon>TGCTTTTTATGCTAAAAGAGTTTTTCGAAATCTCCAAAACTACAAACTACAAAATCTCCAGAACCCGTCCTTCGTTCTCCATCAGCCATCAAACAGGGATTCACATTTCTACCGAACCCACTCGACGGATCTCTTTACGTTTTRAAGAATAGCTCTCTCAAGAAACTGCCGTTCAATATTCCGCAATTGGTCCATGCGTCGCCCTGCCGAGGGACCGACGGAATTATGTATGCTGGAAGTAAGAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13018</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>110533</contig_pos>
        <strand>+</strand>
        <context>AGAAACTGCC[A/G]TTCAATATTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCGACGGATCTCTTTACGTTTTGAAGAATAGCTCTCTCAAGAAACTGCC</left_flank>
        <right_flank>TTCAATATTCCGCAATTGGTCCATGCGTCGCCCTGCCGAGGGACCGACGG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCCGAAGGCGAAAATAGCAAAAAAAAATATGCGAGTGCTTTTCCATCTATGCTCAATCATCTTCCTGCTGCTTTTCTTTGCTTCAGGCACCTACAGTAGTACGCCAGGCTTTCCAAATGCAAGTTTAAAAAAAAGAGCAATTTGAAGAATTCGCATTTTTCAGGAAGAAGAAATTTTCGACGAGGACATTCAAGACACAGTTTTAGCGTCAACTATCGATGGTCGTCTGAGAGCGCTTGATGCGAAAACTGGAAAAATAAAATGGACACTAGAGGAAGGTTAGAATTTTAAAAAACTATAAAAAGAATCAGAAGAAGCTCCAAACTTGCTTTTTATGCTAAAAGAGTTTTTCGAAATCTCCAAAACTACAAACTACAAAATCTCCAGAACCCGTCCTTCGTTCTCCATCAGCCATCAAACAGGGATTCACATTTCTACCGAACCCACTCGACGGATCTCTTTACGTTTTGAAGAATAGCTCTCTCAAGAAACTGCCGTTCAATATTCCGCAATTGGTCCATGCGTCGCCCTGCCGAGGGACCGACGGAATTATGTATGCTGGAAGTAAGAAGGACGTTTGGTTTGGAATCGATCCGACGACGGGGTTGAAGGTACGATTTTTTTTCTAATTTTGGAAGCCTGCAAATACGCTCCATTGACAATTTATAATTTTTTTTCAAATTTCAAAATTTTGCAAAATCGCTCCATTGACAGTTCATCAAGATGTAGATTCCCATAGAAACAACAACAAAAAATTCAAAAAAATTGCAAATTGCTTAAAGATGCCAATTCAAAAATTCTAATAGGGTNNNNNNNNNNTGCATTCACAGTTATGTCGCGAAATGCTTTGAAATACATTTCGCGACGCTCATGCATTGAATTTCGAGGGCGCGGAAATGCATTTCAATACATATCTTCGCTACATGAATAACCCCATAATAATGCTGTAAATTTCAAAATTCTGAAAATCTAGAAGTTCTAAAAATTCTGATAATGC</canonical>
            <polymorphic>TTTTCCGAAGGCGAAAATAGCAAAAAAAAATATGCGAGTGCTTTTCCATCTATGCTCAATCATCTTCCTGCTGCTTTTCTTTGCTTCAGGCACCTACAGTAGTACGCCAGGCTTTCCAAATGCAAGTTTAAAAAAAAGAGCAATTTGAAGAATTCGCATTTTTCAGGAAGAAGAAATTTTCGACGAGGACATTCAAGACACAGTTTTAGCGTCAACTATCGATGGTCGTCTGAGAGCGCTTGATGCGAAAACTGGAAAAATAAAATGGACACTAGAGGAAGGTTAGAATTTTAAAAAACTATAAAAAGAATCAGAAGAAGCTCCAAACTTGCTTTTTATGCTAAAAGAGTTTTTCGAAATCTCCAAAACTACAAACTACAAAATCTCCAGAACCCGTCCTTCGTTCTCCATCAGCCATCAAACAGGGATTCACATTTCTACCGAACCCACTCGACGGATCTCTTTACGTTTTGAAGAATAGCTCTCTCAAGAAACTGCCRTTCAATATTCCGCAATTGGTCCATGCGTCGCCCTGCCGAGGGACCGACGGAATTATGTATGCTGGAAGTAAGAAGGACGTTTGGTTTGGAATCGATCCGACGACGGGGTTGAAGGTACGATTTTTTTTCTAATTTTGGAAGCCTGCAAATACGCTCCATTGACAATTTATAATTTTTTTTCAAATTTCAAAATTTTGCAAAATCGCTCCATTGACAGTTCATCAAGATGTAGATTCCCATAGAAACAACAACAAAAAATTCAAAAAAATTGCAAATTGCTTAAAGATGCCAATTCAAAAATTCTAATAGGGTNNNNNNNNNNTGCATTCACAGTTATGTCGCGAAATGCTTTGAAATACATTTCGCGACGCTCATGCATTGAATTTCGAGGGCGCGGAAATGCATTTCAATACATATCTTCGCTACATGAATAACCCCATAATAATGCTGTAAATTTCAAAATTCTGAAAATCTAGAAGTTCTAAAAATTCTGATAATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTTTTTATGCTAAAAGAGTTT</pcr_primer_p1>
		<pcr_primer_p2>CCTTCTTACTTCCAGCATACATA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGCTTTTTATGCTAAAAGAGTTTTTCGAAATCTCCAAAACTACAAACTACAAAATCTCCAGAACCCGTCCTTCGTTCTCCATCAGCCATCAAACAGGGATTCACATTTCTACCGAACCCACTCGACGGATCTCTTTACGTTTTGAAGAATAGCTCTCTCAAGAAACTGCCGTTCAATATTCCGCAATTGGTCCATGCGTCGCCCTGCCGAGGGACCGACGGAATTATGTATGCTGGAAGTAAGAAGG</canonical_amplicon>
		<polymorphic_amplicon>TGCTTTTTATGCTAAAAGAGTTTTTCGAAATCTCCAAAACTACAAACTACAAAATCTCCAGAACCCGTCCTTCGTTCTCCATCAGCCATCAAACAGGGATTCACATTTCTACCGAACCCACTCGACGGATCTCTTTACGTTTTGAAGAATAGCTCTCTCAAGAAACTGCCRTTCAATATTCCGCAATTGGTCCATGCGTCGCCCTGCCGAGGGACCGACGGAATTATGTATGCTGGAAGTAAGAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13019</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>77461</contig_pos>
        <strand>+</strand>
        <context>GCAAAAGATT[G/T]TGCCCTTTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTTGTTCAGCTACTAATTTTACAGTAAGGGATCACACAGCAAAAGATT</left_flank>
        <right_flank>TGCCCTTTATTAGAAAATATGAATGGACTTGGGGACTATTGTTCTTGCCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGTTCTTACAAATATTTCTTGAAAAGGAGGTTTTGGATTTCGATAGGAGGAATTTTCTGAGAGACACACTTTTTTGGAATCATTTTCGGACTTACTTTTCAAAAAAATTCTGTCTGAGAATAAGAAAAAAGAAATCGTCACTTGACGAAACATAAGGTGTCCTGGGCGTATAAGTGGTGTGAAGAAACCTACCGTAACCCTATCTTGTTAGAAATAATGAGTGGTTTTTGGGAGCCAAAAAAGCGAGAAAAAACACGTCGTTTGTTATAGAGGTACGAAAATAATAGGACCACTAAAAACAGAATGAGAAAAGGGAAAGAGAACAAATCAAATTGCAAAACGATTCTGTCTGATTCACTCTCCTTTTTTGCTGATGCATTGTGGGAATAAGAATAATATTAGAGTGGATATATTTTCCAGAATTTTCAGCTTAAAATCTAACCCGAAAATTTGTTCAGCTACTAATTTTACAGTAAGGGATCACACAGCAAAAGATTGTGCCCTTTATTAGAAAATATGAATGGACTTGGGGACTATTGTTCTTGCCAAGTCATCCAGTTAGTTGGAGAGAAGCATTGAAAGGACGAGAGTCGTTGAATTTGTTGTTTTTTGGCTTTTTTTGGTTAGGGGTGGGCTTTTTCATAAGTTTCAACAAAAAATGGAACAGAAGGAAATTCGAAAAAATAAACAGAGAAGAAACAATGAGTTCCTGGTCCGGGGGTTTACCATGCAGAGGAAATGATGCTTTTGCAACAAAAAAGAATTCCAAAAAAGAAAGGACACAAAATCGAGTCAAAGTACTCAAGAGACTAGAAATATTATGGTGGCTCTAACTGTCGAAGTTTCGCAGTTTATATTTTGCTAAACGAGAAAAAAAATTGAGTACCCATTATTATTTGGGTACGATGAGAGGATAAAATTTTCATTATTATGAAGACAACACTTATATGTTATTGTTTTTGATAGCTGTCAAAACGAACGCGATTCTTAGTAATGTT</canonical>
            <polymorphic>TCAGTTCTTACAAATATTTCTTGAAAAGGAGGTTTTGGATTTCGATAGGAGGAATTTTCTGAGAGACACACTTTTTTGGAATCATTTTCGGACTTACTTTTCAAAAAAATTCTGTCTGAGAATAAGAAAAAAGAAATCGTCACTTGACGAAACATAAGGTGTCCTGGGCGTATAAGTGGTGTGAAGAAACCTACCGTAACCCTATCTTGTTAGAAATAATGAGTGGTTTTTGGGAGCCAAAAAAGCGAGAAAAAACACGTCGTTTGTTATAGAGGTACGAAAATAATAGGACCACTAAAAACAGAATGAGAAAAGGGAAAGAGAACAAATCAAATTGCAAAACGATTCTGTCTGATTCACTCTCCTTTTTTGCTGATGCATTGTGGGAATAAGAATAATATTAGAGTGGATATATTTTCCAGAATTTTCAGCTTAAAATCTAACCCGAAAATTTGTTCAGCTACTAATTTTACAGTAAGGGATCACACAGCAAAAGATTKTGCCCTTTATTAGAAAATATGAATGGACTTGGGGACTATTGTTCTTGCCAAGTCATCCAGTTAGTTGGAGAGAAGCATTGAAAGGACGAGAGTCGTTGAATTTGTTGTTTTTTGGCTTTTTTTGGTTAGGGGTGGGCTTTTTCATAAGTTTCAACAAAAAATGGAACAGAAGGAAATTCGAAAAAATAAACAGAGAAGAAACAATGAGTTCCTGGTCCGGGGGTTTACCATGCAGAGGAAATGATGCTTTTGCAACAAAAAAGAATTCCAAAAAAGAAAGGACACAAAATCGAGTCAAAGTACTCAAGAGACTAGAAATATTATGGTGGCTCTAACTGTCGAAGTTTCGCAGTTTATATTTTGCTAAACGAGAAAAAAAATTGAGTACCCATTATTATTTGGGTACGATGAGAGGATAAAATTTTCATTATTATGAAGACAACACTTATATGTTATTGTTTTTGATAGCTGTCAAAACGAACGCGATTCTTAGTAATGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>150 132 116 77 72 68 65 56 44 42 37 32 26 23 19 17 15 3 2 2 2</canonical_bands>
                <polymorphic_bands>150 147 116 77 72 68 65 56 44 42 37 32 26 23 19 17 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAAAGGGAAAGAGAACAAAT</pcr_primer_p1>
		<pcr_primer_p2>GATGACTTGGCAAGAACAATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGAAAAGGGAAAGAGAACAAATCAAATTGCAAAACGATTCTGTCTGATTCACTCTCCTTTTTTGCTGATGCATTGTGGGAATAAGAATAATATTAGAGTGGATATATTTTCCAGAATTTTCAGCTTAAAATCTAACCCGAAAATTTGTTCAGCTACTAATTTTACAGTAAGGGATCACACAGCAAAAGATTGTGCCCTTTATTAGAAAATATGAATGGACTTGGGGACTATTGTTCTTGCCAAGTCATC</canonical_amplicon>
		<polymorphic_amplicon>AGAAAAGGGAAAGAGAACAAATCAAATTGCAAAACGATTCTGTCTGATTCACTCTCCTTTTTTGCTGATGCATTGTGGGAATAAGAATAATATTAGAGTGGATATATTTTCCAGAATTTTCAGCTTAAAATCTAACCCGAAAATTTGTTCAGCTACTAATTTTACAGTAAGGGATCACACAGCAAAAGATTKTGCCCTTTATTAGAAAATATGAATGGACTTGGGGACTATTGTTCTTGCCAAGTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13020</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>77376</contig_pos>
        <strand>+</strand>
        <context>AGTGGATATW[G/T]TTTCCAGAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTTTTTGCTGATGCATTGTGGGAATAAGAATAATATTAGAGTGGATATA</left_flank>
        <right_flank>TTTCCAGAATTTTCAGCTTAAAATCTAACCCGAAAATTTGTTCAGCTACT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACAGACGCTTAAATCTCCCATCGCTTGCTTATGCACTCAGAATTTATGATCACTTATGGAAATCTTACATTTCTTCCAAGTTCTCAGTTCTTACAAATATTTCTTGAAAAGGAGGTTTTGGATTTCGATAGGAGGAATTTTCTGAGAGACACACTTTTTTGGAATCATTTTCGGACTTACTTTTCAAAAAAATTCTGTCTGAGAATAAGAAAAAAGAAATCGTCACTTGACGAAACATAAGGTGTCCTGGGCGTATAAGTGGTGTGAAGAAACCTACCGTAACCCTATCTTGTTAGAAATAATGAGTGGTTTTTGGGAGCCAAAAAAGCGAGAAAAAACACGTCGTTTGTTATAGAGGTACGAAAATAATAGGACCACTAAAAACAGAATGAGAAAAGGGAAAGAGAACAAATCAAATTGCAAAACGATTCTGTCTGATTCACTCTCCTTTTTTGCTGATGCATTGTGGGAATAAGAATAATATTAGAGTGGATATATTTTCCAGAATTTTCAGCTTAAAATCTAACCCGAAAATTTGTTCAGCTACTAATTTTACAGTAAGGGATCACACAGCAAAAGATTGTGCCCTTTATTAGAAAATATGAATGGACTTGGGGACTATTGTTCTTGCCAAGTCATCCAGTTAGTTGGAGAGAAGCATTGAAAGGACGAGAGTCGTTGAATTTGTTGTTTTTTGGCTTTTTTTGGTTAGGGGTGGGCTTTTTCATAAGTTTCAACAAAAAATGGAACAGAAGGAAATTCGAAAAAATAAACAGAGAAGAAACAATGAGTTCCTGGTCCGGGGGTTTACCATGCAGAGGAAATGATGCTTTTGCAACAAAAAAGAATTCCAAAAAAGAAAGGACACAAAATCGAGTCAAAGTACTCAAGAGACTAGAAATATTATGGTGGCTCTAACTGTCGAAGTTTCGCAGTTTATATTTTGCTAAACGAGAAAAAAAATTGAGTACCCATTATTATTTGGGTACGATGAGAGG</canonical>
            <polymorphic>ACACAGACGCTTAAATCTCCCATCGCTTGCTTATGCACTCAGAATTTATGATCACTTATGGAAATCTTACATTTCTTCCAAGTTCTCAGTTCTTACAAATATTTCTTGAAAAGGAGGTTTTGGATTTCGATAGGAGGAATTTTCTGAGAGACACACTTTTTTGGAATCATTTTCGGACTTACTTTTCAAAAAAATTCTGTCTGAGAATAAGAAAAAAGAAATCGTCACTTGACGAAACATAAGGTGTCCTGGGCGTATAAGTGGTGTGAAGAAACCTACCGTAACCCTATCTTGTTAGAAATAATGAGTGGTTTTTGGGAGCCAAAAAAGCGAGAAAAAACACGTCGTTTGTTATAGAGGTACGAAAATAATAGGACCACTAAAAACAGAATGAGAAAAGGGAAAGAGAACAAATCAAATTGCAAAACGATTCTGTCTGATTCACTCTCCTTTTTTGCTGATGCATTGTGGGAATAAGAATAATATTAGAGTGGATATAKTTTCCAGAATTTTCAGCTTAAAATCTAACCCGAAAATTTGTTCAGCTACTAATTTTACAGTAAGGGATCACACAGCAAAAGATTGTGCCCTTTATTAGAAAATATGAATGGACTTGGGGACTATTGTTCTTGCCAAGTCATCCAGTTAGTTGGAGAGAAGCATTGAAAGGACGAGAGTCGTTGAATTTGTTGTTTTTTGGCTTTTTTTGGTTAGGGGTGGGCTTTTTCATAAGTTTCAACAAAAAATGGAACAGAAGGAAATTCGAAAAAATAAACAGAGAAGAAACAATGAGTTCCTGGTCCGGGGGTTTACCATGCAGAGGAAATGATGCTTTTGCAACAAAAAAGAATTCCAAAAAAGAAAGGACACAAAATCGAGTCAAAGTACTCAAGAGACTAGAAATATTATGGTGGCTCTAACTGTCGAAGTTTCGCAGTTTATATTTTGCTAAACGAGAAAAAAAATTGAGTACCCATTATTATTTGGGTACGATGAGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACACGTCGTTTGTTATAGAG</pcr_primer_p1>
		<pcr_primer_p2>TGTGTGATCCCTTACTGTAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AAAACACGTCGTTTGTTATAGAGGTACGAAAATAATAGGACCACTAAAAACAGAATGAGAAAAGGGAAAGAGAACAAATCAAATTGCAAAACGATTCTGTCTGATTCACTCTCCTTTTTTGCTGATGCATTGTGGGAATAAGAATAATATTAGAGTGGATATATTTTCCAGAATTTTCAGCTTAAAATCTAACCCGAAAATTTGTTCAGCTACTAATTTTACAGTAAGGGATCACACA</canonical_amplicon>
		<polymorphic_amplicon>AAAACACGTCGTTTGTTATAGAGGTACGAAAATAATAGGACCACTAAAAACAGAATGAGAAAAGGGAAAGAGAACAAATCAAATTGCAAAACGATTCTGTCTGATTCACTCTCCTTTTTTGCTGATGCATTGTGGGAATAAGAATAATATTAGAGTGGATATAKTTTCCAGAATTTTCAGCTTAAAATCTAACCCGAAAATTTGTTCAGCTACTAATTTTACAGTAAGGGATCACACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13021</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>77375</contig_pos>
        <strand>+</strand>
        <context>GAGTGGATAT[A/T]KTTTCCAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCTTTTTTGCTGATGCATTGTGGGAATAAGAATAATATTAGAGTGGATAT</left_flank>
        <right_flank>TTTTCCAGAATTTTCAGCTTAAAATCTAACCCGAAAATTTGTTCAGCTAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACACAGACGCTTAAATCTCCCATCGCTTGCTTATGCACTCAGAATTTATGATCACTTATGGAAATCTTACATTTCTTCCAAGTTCTCAGTTCTTACAAATATTTCTTGAAAAGGAGGTTTTGGATTTCGATAGGAGGAATTTTCTGAGAGACACACTTTTTTGGAATCATTTTCGGACTTACTTTTCAAAAAAATTCTGTCTGAGAATAAGAAAAAAGAAATCGTCACTTGACGAAACATAAGGTGTCCTGGGCGTATAAGTGGTGTGAAGAAACCTACCGTAACCCTATCTTGTTAGAAATAATGAGTGGTTTTTGGGAGCCAAAAAAGCGAGAAAAAACACGTCGTTTGTTATAGAGGTACGAAAATAATAGGACCACTAAAAACAGAATGAGAAAAGGGAAAGAGAACAAATCAAATTGCAAAACGATTCTGTCTGATTCACTCTCCTTTTTTGCTGATGCATTGTGGGAATAAGAATAATATTAGAGTGGATATATTTTCCAGAATTTTCAGCTTAAAATCTAACCCGAAAATTTGTTCAGCTACTAATTTTACAGTAAGGGATCACACAGCAAAAGATTGTGCCCTTTATTAGAAAATATGAATGGACTTGGGGACTATTGTTCTTGCCAAGTCATCCAGTTAGTTGGAGAGAAGCATTGAAAGGACGAGAGTCGTTGAATTTGTTGTTTTTTGGCTTTTTTTGGTTAGGGGTGGGCTTTTTCATAAGTTTCAACAAAAAATGGAACAGAAGGAAATTCGAAAAAATAAACAGAGAAGAAACAATGAGTTCCTGGTCCGGGGGTTTACCATGCAGAGGAAATGATGCTTTTGCAACAAAAAAGAATTCCAAAAAAGAAAGGACACAAAATCGAGTCAAAGTACTCAAGAGACTAGAAATATTATGGTGGCTCTAACTGTCGAAGTTTCGCAGTTTATATTTTGCTAAACGAGAAAAAAAATTGAGTACCCATTATTATTTGGGTACGATGAGAG</canonical>
            <polymorphic>AACACAGACGCTTAAATCTCCCATCGCTTGCTTATGCACTCAGAATTTATGATCACTTATGGAAATCTTACATTTCTTCCAAGTTCTCAGTTCTTACAAATATTTCTTGAAAAGGAGGTTTTGGATTTCGATAGGAGGAATTTTCTGAGAGACACACTTTTTTGGAATCATTTTCGGACTTACTTTTCAAAAAAATTCTGTCTGAGAATAAGAAAAAAGAAATCGTCACTTGACGAAACATAAGGTGTCCTGGGCGTATAAGTGGTGTGAAGAAACCTACCGTAACCCTATCTTGTTAGAAATAATGAGTGGTTTTTGGGAGCCAAAAAAGCGAGAAAAAACACGTCGTTTGTTATAGAGGTACGAAAATAATAGGACCACTAAAAACAGAATGAGAAAAGGGAAAGAGAACAAATCAAATTGCAAAACGATTCTGTCTGATTCACTCTCCTTTTTTGCTGATGCATTGTGGGAATAAGAATAATATTAGAGTGGATATWTTTTCCAGAATTTTCAGCTTAAAATCTAACCCGAAAATTTGTTCAGCTACTAATTTTACAGTAAGGGATCACACAGCAAAAGATTGTGCCCTTTATTAGAAAATATGAATGGACTTGGGGACTATTGTTCTTGCCAAGTCATCCAGTTAGTTGGAGAGAAGCATTGAAAGGACGAGAGTCGTTGAATTTGTTGTTTTTTGGCTTTTTTTGGTTAGGGGTGGGCTTTTTCATAAGTTTCAACAAAAAATGGAACAGAAGGAAATTCGAAAAAATAAACAGAGAAGAAACAATGAGTTCCTGGTCCGGGGGTTTACCATGCAGAGGAAATGATGCTTTTGCAACAAAAAAGAATTCCAAAAAAGAAAGGACACAAAATCGAGTCAAAGTACTCAAGAGACTAGAAATATTATGGTGGCTCTAACTGTCGAAGTTTCGCAGTTTATATTTTGCTAAACGAGAAAAAAAATTGAGTACCCATTATTATTTGGGTACGATGAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACACGTCGTTTGTTATAGAG</pcr_primer_p1>
		<pcr_primer_p2>TGTGTGATCCCTTACTGTAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AAAACACGTCGTTTGTTATAGAGGTACGAAAATAATAGGACCACTAAAAACAGAATGAGAAAAGGGAAAGAGAACAAATCAAATTGCAAAACGATTCTGTCTGATTCACTCTCCTTTTTTGCTGATGCATTGTGGGAATAAGAATAATATTAGAGTGGATATATTTTCCAGAATTTTCAGCTTAAAATCTAACCCGAAAATTTGTTCAGCTACTAATTTTACAGTAAGGGATCACACA</canonical_amplicon>
		<polymorphic_amplicon>AAAACACGTCGTTTGTTATAGAGGTACGAAAATAATAGGACCACTAAAAACAGAATGAGAAAAGGGAAAGAGAACAAATCAAATTGCAAAACGATTCTGTCTGATTCACTCTCCTTTTTTGCTGATGCATTGTGGGAATAAGAATAATATTAGAGTGGATATWTTTTCCAGAATTTTCAGCTTAAAATCTAACCCGAAAATTTGTTCAGCTACTAATTTTACAGTAAGGGATCACACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13022</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>77304</contig_pos>
        <strand>+</strand>
        <context>AATTGCAAAA[C/T]GATTCTGTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACTAAAAACAGAATGAGAAAAGGGAAAGAGAACAAATCAAATTGCAAAA</left_flank>
        <right_flank>GATTCTGTCTGATTCACTCTCCTTTTTTGCTGATGCATTGTGGGAATAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATTTTATCGTTTCAAGAAGGAAAGAGGAAAGGATTGGTAAAAACTGCAATATTCTAAATCACGATTTTCAACACAGACGCTTAAATCTCCCATCGCTTGCTTATGCACTCAGAATTTATGATCACTTATGGAAATCTTACATTTCTTCCAAGTTCTCAGTTCTTACAAATATTTCTTGAAAAGGAGGTTTTGGATTTCGATAGGAGGAATTTTCTGAGAGACACACTTTTTTGGAATCATTTTCGGACTTACTTTTCAAAAAAATTCTGTCTGAGAATAAGAAAAAAGAAATCGTCACTTGACGAAACATAAGGTGTCCTGGGCGTATAAGTGGTGTGAAGAAACCTACCGTAACCCTATCTTGTTAGAAATAATGAGTGGTTTTTGGGAGCCAAAAAAGCGAGAAAAAACACGTCGTTTGTTATAGAGGTACGAAAATAATAGGACCACTAAAAACAGAATGAGAAAAGGGAAAGAGAACAAATCAAATTGCAAAACGATTCTGTCTGATTCACTCTCCTTTTTTGCTGATGCATTGTGGGAATAAGAATAATATTAGAGTGGATATATTTTCCAGAATTTTCAGCTTAAAATCTAACCCGAAAATTTGTTCAGCTACTAATTTTACAGTAAGGGATCACACAGCAAAAGATTGTGCCCTTTATTAGAAAATATGAATGGACTTGGGGACTATTGTTCTTGCCAAGTCATCCAGTTAGTTGGAGAGAAGCATTGAAAGGACGAGAGTCGTTGAATTTGTTGTTTTTTGGCTTTTTTTGGTTAGGGGTGGGCTTTTTCATAAGTTTCAACAAAAAATGGAACAGAAGGAAATTCGAAAAAATAAACAGAGAAGAAACAATGAGTTCCTGGTCCGGGGGTTTACCATGCAGAGGAAATGATGCTTTTGCAACAAAAAAGAATTCCAAAAAAGAAAGGACACAAAATCGAGTCAAAGTACTCAAGAGACTAGAAATATTATGGTGGCTCTAACTGTCGAA</canonical>
            <polymorphic>ATATTTTATCGTTTCAAGAAGGAAAGAGGAAAGGATTGGTAAAAACTGCAATATTCTAAATCACGATTTTCAACACAGACGCTTAAATCTCCCATCGCTTGCTTATGCACTCAGAATTTATGATCACTTATGGAAATCTTACATTTCTTCCAAGTTCTCAGTTCTTACAAATATTTCTTGAAAAGGAGGTTTTGGATTTCGATAGGAGGAATTTTCTGAGAGACACACTTTTTTGGAATCATTTTCGGACTTACTTTTCAAAAAAATTCTGTCTGAGAATAAGAAAAAAGAAATCGTCACTTGACGAAACATAAGGTGTCCTGGGCGTATAAGTGGTGTGAAGAAACCTACCGTAACCCTATCTTGTTAGAAATAATGAGTGGTTTTTGGGAGCCAAAAAAGCGAGAAAAAACACGTCGTTTGTTATAGAGGTACGAAAATAATAGGACCACTAAAAACAGAATGAGAAAAGGGAAAGAGAACAAATCAAATTGCAAAAYGATTCTGTCTGATTCACTCTCCTTTTTTGCTGATGCATTGTGGGAATAAGAATAATATTAGAGTGGATATATTTTCCAGAATTTTCAGCTTAAAATCTAACCCGAAAATTTGTTCAGCTACTAATTTTACAGTAAGGGATCACACAGCAAAAGATTGTGCCCTTTATTAGAAAATATGAATGGACTTGGGGACTATTGTTCTTGCCAAGTCATCCAGTTAGTTGGAGAGAAGCATTGAAAGGACGAGAGTCGTTGAATTTGTTGTTTTTTGGCTTTTTTTGGTTAGGGGTGGGCTTTTTCATAAGTTTCAACAAAAAATGGAACAGAAGGAAATTCGAAAAAATAAACAGAGAAGAAACAATGAGTTCCTGGTCCGGGGGTTTACCATGCAGAGGAAATGATGCTTTTGCAACAAAAAAGAATTCCAAAAAAGAAAGGACACAAAATCGAGTCAAAGTACTCAAGAGACTAGAAATATTATGGTGGCTCTAACTGTCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGTTAGAAATAATGAGTGGTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTTCGGGTTAGATTTTAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTGTTAGAAATAATGAGTGGTTTTTGGGAGCCAAAAAAGCGAGAAAAAACACGTCGTTTGTTATAGAGGTACGAAAATAATAGGACCACTAAAAACAGAATGAGAAAAGGGAAAGAGAACAAATCAAATTGCAAAACGATTCTGTCTGATTCACTCTCCTTTTTTGCTGATGCATTGTGGGAATAAGAATAATATTAGAGTGGATATATTTTCCAGAATTTTCAGCTTAAAATCTAACCCGAAAATTT</canonical_amplicon>
		<polymorphic_amplicon>CTTGTTAGAAATAATGAGTGGTTTTTGGGAGCCAAAAAAGCGAGAAAAAACACGTCGTTTGTTATAGAGGTACGAAAATAATAGGACCACTAAAAACAGAATGAGAAAAGGGAAAGAGAACAAATCAAATTGCAAAAYGATTCTGTCTGATTCACTCTCCTTTTTTGCTGATGCATTGTGGGAATAAGAATAATATTAGAGTGGATATATTTTCCAGAATTTTCAGCTTAAAATCTAACCCGAAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13023</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>105085</contig_pos>
        <strand>+</strand>
        <context>ACACATGGGA[C/T]CTTTTCAAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGCCACTGTTCATTTTCCGCCGAACACAATCCTTCAAGCACACATGGGA</left_flank>
        <right_flank>CTTTTCAAGCCTAGTGAACTCATACAGTAGTCCGCGAGCCTGTAACATTT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGACCCCTTATGAGAAGAGCTCTTCGAGTGGGATTTGGAAAAAAAGGAATGTCCCCATAAACATTCGTTGTTTGAAATTAACAGTTTTCCGTACATTTCCAGTGAAAAATATTTTGGAAATTCGACAATTTCTCAGGACCAATTTGTTAAGAGAAAATTTGGAAAAAATGGCCGGGTAAATTATTAGAGGGCTCTGTATGATAGAAAGGTCCTCCAAAAGAAGAGGTTTTACGGTAACTTTATCAATATTCTTATTCTCCTATTATTTGACCTGATAAACTAAATTTCACTAGGACCTCTGTCCCGGCGACCCAATTTGCAAAAATTCGCAACCTTACCCATTATCATTAATATTGATGTTCCTTCAGGTATCCTGGAAACTTCACAAAATACAACATCGTTTTATACTCACCTGGTTACAATAGAAATTTCTGAAGGACTTGTGCGAGTGCCACTGTTCATTTTCCGCCGAACACAATCCTTCAAGCACACATGGGACCTTTTCAAGCCTAGTGAACTCATACAGTAGTCCGCGAGCCTGTAACATTTTATACATTCTACCTATTTCATTCCTCCAGGTTTTCTCACTTTTTGTAATACCAGCACAGGATCCATGTGCATGGCAAGAGATGAGAAGTAGAGGAGAATCTCATCATGAGGCAAGTCTTGAGCTATAACATCCTTTCCATATACAGACACTATAGCAACACAGACAAAGAGATGAAAGTAATTGGTTCGCCAAGCCGCCCAGCATCCCTTAAAACTTAGAATTAGAATAAAATAATTTACAGTTTCGTTGTAATTACCTCCCACACATGAAGTGCATGGTTTTCGGGGAATTCTCTTTTGAAGCAAAGAAGAATCCAACGATGTACAAACATCAGCTGCATTGCATCTGGCTTTTGCTTCTCAAGATGCTGGTAGAAATCCGGCTCAAACAGTTTTATCATGTTCCGCAGGTAATTGAGATTTGTCTCCATCAAATTCTCATTTCCCTGT</canonical>
            <polymorphic>AGGACCCCTTATGAGAAGAGCTCTTCGAGTGGGATTTGGAAAAAAAGGAATGTCCCCATAAACATTCGTTGTTTGAAATTAACAGTTTTCCGTACATTTCCAGTGAAAAATATTTTGGAAATTCGACAATTTCTCAGGACCAATTTGTTAAGAGAAAATTTGGAAAAAATGGCCGGGTAAATTATTAGAGGGCTCTGTATGATAGAAAGGTCCTCCAAAAGAAGAGGTTTTACGGTAACTTTATCAATATTCTTATTCTCCTATTATTTGACCTGATAAACTAAATTTCACTAGGACCTCTGTCCCGGCGACCCAATTTGCAAAAATTCGCAACCTTACCCATTATCATTAATATTGATGTTCCTTCAGGTATCCTGGAAACTTCACAAAATACAACATCGTTTTATACTCACCTGGTTACAATAGAAATTTCTGAAGGACTTGTGCGAGTGCCACTGTTCATTTTCCGCCGAACACAATCCTTCAAGCACACATGGGAYCTTTTCAAGCCTAGTGAACTCATACAGTAGTCCGCGAGCCTGTAACATTTTATACATTCTACCTATTTCATTCCTCCAGGTTTTCTCACTTTTTGTAATACCAGCACAGGATCCATGTGCATGGCAAGAGATGAGAAGTAGAGGAGAATCTCATCATGAGGCAAGTCTTGAGCTATAACATCCTTTCCATATACAGACACTATAGCAACACAGACAAAGAGATGAAAGTAATTGGTTCGCCAAGCCGCCCAGCATCCCTTAAAACTTAGAATTAGAATAAAATAATTTACAGTTTCGTTGTAATTACCTCCCACACATGAAGTGCATGGTTTTCGGGGAATTCTCTTTTGAAGCAAAGAAGAATCCAACGATGTACAAACATCAGCTGCATTGCATCTGGCTTTTGCTTCTCAAGATGCTGGTAGAAATCCGGCTCAAACAGTTTTATCATGTTCCGCAGGTAATTGAGATTTGTCTCCATCAAATTCTCATTTCCCTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>503 203 135 85 72 2</canonical_bands>
                <polymorphic_bands>706 135 85 72 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>503 203 135 85 72 2</canonical_bands>
                <polymorphic_bands>706 135 85 72 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>494 389 113 4</canonical_bands>
                <polymorphic_bands>607 389 4</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>503 207 203 85 2</canonical_bands>
                <polymorphic_bands>706 207 85 2</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>503 207 203 85 2</canonical_bands>
                <polymorphic_bands>706 207 85 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGTTTTATACTCACCTGGTTAC</pcr_primer_p1>
		<pcr_primer_p2>TCTCCTCTACTTCTCATCTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCGTTTTATACTCACCTGGTTACAATAGAAATTTCTGAAGGACTTGTGCGAGTGCCACTGTTCATTTTCCGCCGAACACAATCCTTCAAGCACACATGGGACCTTTTCAAGCCTAGTGAACTCATACAGTAGTCCGCGAGCCTGTAACATTTTATACATTCTACCTATTTCATTCCTCCAGGTTTTCTCACTTTTTGTAATACCAGCACAGGATCCATGTGCATGGCAAGAGATGAGAAGTAGAGGAGA</canonical_amplicon>
		<polymorphic_amplicon>TCGTTTTATACTCACCTGGTTACAATAGAAATTTCTGAAGGACTTGTGCGAGTGCCACTGTTCATTTTCCGCCGAACACAATCCTTCAAGCACACATGGGAYCTTTTCAAGCCTAGTGAACTCATACAGTAGTCCGCGAGCCTGTAACATTTTATACATTCTACCTATTTCATTCCTCCAGGTTTTCTCACTTTTTGTAATACCAGCACAGGATCCATGTGCATGGCAAGAGATGAGAAGTAGAGGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13024</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>161327</contig_pos>
        <strand>+</strand>
        <context>AAAAGTAACA[A/G]AAGTTTACAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAATAAGAAACCTAGAAAAGAAAATACAGAAAATAATAAAAAAGTAACA</left_flank>
        <right_flank>AAGTTTACAAAGAAATGCTCACGGGGCAAATTCTGGGGGAAAGAGAAATT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAATTCTGTAAAACTTTTTAAAGTGTGAAGAAACCAACAAAAAACTTTTCTCGAAAAAAAAAACATTTCATTGCTAAGCATGATCAACGAAATGAAACGATATATATAGAAATCTTGTGCATTGGATCAACAAAGTAATACATCATGACATTTCGGAAATGCTCAAAGAGAAAATGGTTATGGGAGACAGACAGAGAGAACATCAAAATGAAACGTTTCCATAATCTCTTTTTCTGGAACGAAATGAGTTTGAGTATATTGCGTAGTGAGAGCGAGAACAAAGAAAAAACGACACTGAACTTGAAATAGAGCGAGTAAGACCCTCCCTTTCCATGAATATGAACATCGGACTAAAAAAAGTGGAAGACATAACAATAGATTTACAGCTATGTATACATAATTCAAGTGATAATCAACATACAGAAATCTTTGGGTGCGCCCCAGAATTGAAATAAGAAACCTAGAAAAGAAAATACAGAAAATAATAAAAAAGTAACAGAAGTTTACAAAGAAATGCTCACGGGGCAAATTCTGGGGGAAAGAGAAATTTTCAAATGTCAAAAAATTGACCAAAACAAAAATTACAAACTTTGGGAAAAGTAACGATGAAATTTACATATTCACATTTTTGAGGGGTTAGGTCAGGGTCAGGATACTGCTCGAAATATATATAGATAAGGGGAAAAATGAAAAAGTTAGCATATATGAAAGTTAAACTGATCTGATAAAGATGGAAAAGAAAAATGAGTGCACGTGACAATCTTAGGGAAGAAAGGAGAAAAAAGTGAAAAAAAAAGAACTGATCTCAAGTTAAAAAAAGCATTGATACTGTAACTTTGCATCAATGGCATGAAAATGAAAAAAAATTAAGTGAACAGGTTACCATAGCGTCAAGATTAAATGATTGAAAAAACAGTAACAAAAGTTTACATTTTGAGGAGTATTACAGAGCTTAGCTGCGTTAAGACACAAAGAGATTTTTGAAAAGGCATTTTGTAA</canonical>
            <polymorphic>GTAATTCTGTAAAACTTTTTAAAGTGTGAAGAAACCAACAAAAAACTTTTCTCGAAAAAAAAAACATTTCATTGCTAAGCATGATCAACGAAATGAAACGATATATATAGAAATCTTGTGCATTGGATCAACAAAGTAATACATCATGACATTTCGGAAATGCTCAAAGAGAAAATGGTTATGGGAGACAGACAGAGAGAACATCAAAATGAAACGTTTCCATAATCTCTTTTTCTGGAACGAAATGAGTTTGAGTATATTGCGTAGTGAGAGCGAGAACAAAGAAAAAACGACACTGAACTTGAAATAGAGCGAGTAAGACCCTCCCTTTCCATGAATATGAACATCGGACTAAAAAAAGTGGAAGACATAACAATAGATTTACAGCTATGTATACATAATTCAAGTGATAATCAACATACAGAAATCTTTGGGTGCGCCCCAGAATTGAAATAAGAAACCTAGAAAAGAAAATACAGAAAATAATAAAAAAGTAACARAAGTTTACAAAGAAATGCTCACGGGGCAAATTCTGGGGGAAAGAGAAATTTTCAAATGTCAAAAAATTGACCAAAACAAAAATTACAAACTTTGGGAAAAGTAACGATGAAATTTACATATTCACATTTTTGAGGGGTTAGGTCAGGGTCAGGATACTGCTCGAAATATATATAGATAAGGGGAAAAATGAAAAAGTTAGCATATATGAAAGTTAAACTGATCTGATAAAGATGGAAAAGAAAAATGAGTGCACGTGACAATCTTAGGGAAGAAAGGAGAAAAAAGTGAAAAAAAAAGAACTGATCTCAAGTTAAAAAAAGCATTGATACTGTAACTTTGCATCAATGGCATGAAAATGAAAAAAAATTAAGTGAACAGGTTACCATAGCGTCAAGATTAAATGATTGAAAAAACAGTAACAAAAGTTTACATTTTGAGGAGTATTACAGAGCTTAGCTGCGTTAAGACACAAAGAGATTTTTGAAAAGGCATTTTGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGAATTGAAATAAGAAACCTA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCATTTTTCCCCTTATCTAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CCAGAATTGAAATAAGAAACCTAGAAAAGAAAATACAGAAAATAATAAAAAAGTAACAGAAGTTTACAAAGAAATGCTCACGGGGCAAATTCTGGGGGAAAGAGAAATTTTCAAATGTCAAAAAATTGACCAAAACAAAAATTACAAACTTTGGGAAAAGTAACGATGAAATTTACATATTCACATTTTTGAGGGGTTAGGTCAGGGTCAGGATACTGCTCGAAATATATATAGATAAGGGGAAAAATGAAAA</canonical_amplicon>
		<polymorphic_amplicon>CCAGAATTGAAATAAGAAACCTAGAAAAGAAAATACAGAAAATAATAAAAAAGTAACARAAGTTTACAAAGAAATGCTCACGGGGCAAATTCTGGGGGAAAGAGAAATTTTCAAATGTCAAAAAATTGACCAAAACAAAAATTACAAACTTTGGGAAAAGTAACGATGAAATTTACATATTCACATTTTTGAGGGGTTAGGTCAGGGTCAGGATACTGCTCGAAATATATATAGATAAGGGGAAAAATGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13025</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>193480</contig_pos>
        <strand></strand>
        <context>GTAGGAGTAG[G/T]KGAAGCTATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATATTTCAATTGGTGTTTCGATACAGGAAACACAAGCACGTAGGAGTAG</left_flank>
        <right_flank>AGAAGCTATTTATTTGATTATTTTCAGAGAAACACTGAGTGAGTGAAAAA</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACCAAAAAAGGAAACGATATAAATGAGTGATAAAAACGATTATCTTAAGATGTGTTAAAAGGGAAAAAATGTTTACACCTGCGAGGGTGGAGGGCTAAGGAAAACAATTATAATGGAGAACGTAACGTAAAAAAACTTGCGCAAAAAAAACTGAAATACGAAGAAGATGATGAGATAGGTGAGGTGAACTAACGAAACCTATTTCCCCGATTCGCGGAAAAAACTAAACCTAATGTCACATAAAAAAAGGAAAAGCGAGATAATTCAAAAAACGGAACCCAGCTACCGTATCCAAAGTAGGAGGGAGAGTGAGAGGAAGTGTGACGATTTTTTTGAAATTTTTTGAAATTTTAATTGGGAAATCTTCTGGAAACTTCATGAGTAAGCACATTTTTTTTGCTTGAAAAGAAATTGTTAATTACGATTTTCCGGTGAGATGATGACACGGATATTTCAATTGGTGTTTCGATACAGGAAACACAAGCACGTAGGAGTAGGAGAAGCTATTTATTTGATTATTTTCAGAGAAACACTGAGTGAGTGAAAAAATATATTTTGTTGTGAAAAAACTGAAGAGCAACCAATTAAAAAGAGTGAGAAACCAAACCACGGACAAAAAAATTTTCTTCAGTTTCCGACTTTTTTCCTTTGAAAACAAAGAGAAATTCTTTTCACTTCAGAAACAAGGATTATTGGAAGGGTGCCAAATAACGACCGGGGTTTTTTGGTGGTGGAGCCCATCGAAATGGGTTTGTTGTAATGCTTGGTGGCTTATGTCCACAAATGACATTCAACCTTTGCCACTAGACTCTAGAAGAAAAAAAACCAAAAAAAAGAAAATCAGAAATCGTCCTCAACAATATGGAATGGACAATTGAGTAAATTGAGAATTCAGTTGCTGGTAATACTGTCGAATGCCGTTCTAAGATTAAGTGTCTTCTGTCGTGGACCGTTGTTTCAAAGTCTATAAAATGAGACAATCGAAGGCCATCGACATC</canonical>
            <polymorphic>AGACCAAAAAAGGAAACGATATAAATGAGTGATAAAAACGATTATCTTAAGATGTGTTAAAAGGGAAAAAATGTTTACACCTGCGAGGGTGGAGGGCTAAGGAAAACAATTATAATGGAGAACGTAACGTAAAAAAACTTGCGCAAAAAAAACTGAAATACGAAGAAGATGATGAGATAGGTGAGGTGAACTAACGAAACCTATTTCCCCGATTCGCGGAAAAAACTAAACCTAATGTCACATAAAAAAAGGAAAAGCGAGATAATTCAAAAAACGGAACCCAGCTACCGTATCCAAAGTAGGAGGGAGAGTGAGAGGAAGTGTGACGATTTTTTTGAAATTTTTTGAAATTTTAATTGGGAAATCTTCTGGAAACTTCATGAGTAAGCACATTTTTTTTGCTTGAAAAGAAATTGTTAATTACGATTTTCCGGTGAGATGATGACACGGATATTTCAATTGGTGTTTCGATACAGGAAACACAAGCACGTAGGAGTAGKAGAAGCTATTTATTTGATTATTTTCAGAGAAACACTGAGTGAGTGAAAAAATATATTTTGTTGTGAAAAAACTGAAGAGCAACCAATTAAAAAGAGTGAGAAACCAAACCACGGACAAAAAAATTTTCTTCAGTTTCCGACTTTTTTCCTTTGAAAACAAAGAGAAATTCTTTTCACTTCAGAAACAAGGATTATTGGAAGGGTGCCAAATAACGACCGGGGTTTTTTGGTGGTGGAGCCCATCGAAATGGGTTTGTTGTAATGCTTGGTGGCTTATGTCCACAAATGACATTCAACCTTTGCCACTAGACTCTAGAAGAAAAAAAACCAAAAAAAAGAAAATCAGAAATCGTCCTCAACAATATGGAATGGACAATTGAGTAAATTGAGAATTCAGTTGCTGGTAATACTGTCGAATGCCGTTCTAAGATTAAGTGTCTTCTGTCGTGGACCGTTGTTTCAAAGTCTATAAAATGAGACAATCGAAGGCCATCGACATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTTAATTGGGAAATCTTCT</pcr_primer_p1>
		<pcr_primer_p2>ACTCTTTTTAATTGGTTGCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTTTAATTGGGAAATCTTCTGGAAACTTCATGAGTAAGCACATTTTTTTTGCTTGAAAAGAAATTGTTAATTACGATTTTCCGGTGAGATGATGACACGGATATTTCAATTGGTGTTTCGATACAGGAAACACAAGCACGTAGGAGTAGGAGAAGCTATTTATTTGATTATTTTCAGAGAAACACTGAGTGAGTGAAAAAATATATTTTGTTGTGAAAAAACTGAAGAGCAACCAATTAAAAAGAGT</canonical_amplicon>
		<polymorphic_amplicon>AAATTTTAATTGGGAAATCTTCTGGAAACTTCATGAGTAAGCACATTTTTTTTGCTTGAAAAGAAATTGTTAATTACGATTTTCCGGTGAGATGATGACACGGATATTTCAATTGGTGTTTCGATACAGGAAACACAAGCACGTAGGAGTAGKAGAAGCTATTTATTTGATTATTTTCAGAGAAACACTGAGTGAGTGAAAAAATATATTTTGTTGTGAAAAAACTGAAGAGCAACCAATTAAAAAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13026</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>193862</contig_pos>
        <strand>+</strand>
        <context>GACAATTGAG[G/T]AAATTGAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAAAGAAAATCAGAAATCGTCCTCAACAATATGGAATGGACAATTGAG</left_flank>
        <right_flank>AAATTGAGAATTCAGTTGCTGGTAATACTGTCGAATGCCGTTCTAAGATT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTAAGCACATTTTTTTTGCTTGAAAAGAAATTGTTAATTACGATTTTCCGGTGAGATGATGACACGGATATTTCAATTGGTGTTTCGATACAGGAAACACAAGCACGTAGGAGTAGGAGAAGCTATTTATTTGATTATTTTCAGAGAAACACTGAGTGAGTGAAAAAATATATTTTGTTGTGAAAAAACTGAAGAGCAACCAATTAAAAAGAGTGAGAAACCAAACCACGGACAAAAAAATTTTCTTCAGTTTCCGACTTTTTTCCTTTGAAAACAAAGAGAAATTCTTTTCACTTCAGAAACAAGGATTATTGGAAGGGTGCCAAATAACGACCGGGGTTTTTTGGTGGTGGAGCCCATCGAAATGGGTTTGTTGTAATGCTTGGTGGCTTATGTCCACAAATGACATTCAACCTTTGCCACTAGACTCTAGAAGAAAAAAAACCAAAAAAAAGAAAATCAGAAATCGTCCTCAACAATATGGAATGGACAATTGAGTAAATTGAGAATTCAGTTGCTGGTAATACTGTCGAATGCCGTTCTAAGATTAAGTGTCTTCTGTCGTGGACCGTTGTTTCAAAGTCTATAAAATGAGACAATCGAAGGCCATCGACATCTGCGGAAAAGAGCTTGCGCTCATTTTTCTTCAACAGTAGCAGCAGCAGCAGTCGCCCCCTATCCCCTCCTGTCGCAAAAACCATCGTTATTTTGTACCCAAGGACGACATTTTGAACGGTTTTGCCCTTCGATTGCAATTTTTCATGAAGGCGTCTCGTTTTTTCGCGGCCAACCTATTTCGAATTGAGACGATGAGACCCGATTTTCGGAAGAAAGAAAAAAAACGAGGGCGCATTTAGAAAGTTGGTTTTTTTATTGTTCACTTCCATTTGACCTAATCTAAATAAAAACCTCTTTCTCTCTCTCTCTCTCTATATCTATTCCTTCGCAACCTTTGATCTTTTTTGTTCAAATTTTTCTTCGAAAGTTTAGGAAATGAGC</canonical>
            <polymorphic>AGTAAGCACATTTTTTTTGCTTGAAAAGAAATTGTTAATTACGATTTTCCGGTGAGATGATGACACGGATATTTCAATTGGTGTTTCGATACAGGAAACACAAGCACGTAGGAGTAGGAGAAGCTATTTATTTGATTATTTTCAGAGAAACACTGAGTGAGTGAAAAAATATATTTTGTTGTGAAAAAACTGAAGAGCAACCAATTAAAAAGAGTGAGAAACCAAACCACGGACAAAAAAATTTTCTTCAGTTTCCGACTTTTTTCCTTTGAAAACAAAGAGAAATTCTTTTCACTTCAGAAACAAGGATTATTGGAAGGGTGCCAAATAACGACCGGGGTTTTTTGGTGGTGGAGCCCATCGAAATGGGTTTGTTGTAATGCTTGGTGGCTTATGTCCACAAATGACATTCAACCTTTGCCACTAGACTCTAGAAGAAAAAAAACCAAAAAAAAGAAAATCAGAAATCGTCCTCAACAATATGGAATGGACAATTGAGKAAATTGAGAATTCAGTTGCTGGTAATACTGTCGAATGCCGTTCTAAGATTAAGTGTCTTCTGTCGTGGACCGTTGTTTCAAAGTCTATAAAATGAGACAATCGAAGGCCATCGACATCTGCGGAAAAGAGCTTGCGCTCATTTTTCTTCAACAGTAGCAGCAGCAGCAGTCGCCCCCTATCCCCTCCTGTCGCAAAAACCATCGTTATTTTGTACCCAAGGACGACATTTTGAACGGTTTTGCCCTTCGATTGCAATTTTTCATGAAGGCGTCTCGTTTTTTCGCGGCCAACCTATTTCGAATTGAGACGATGAGACCCGATTTTCGGAAGAAAGAAAAAAAACGAGGGCGCATTTAGAAAGTTGGTTTTTTTATTGTTCACTTCCATTTGACCTAATCTAAATAAAAACCTCTTTCTCTCTCTCTCTCTCTATATCTATTCCTTCGCAACCTTTGATCTTTTTTGTTCAAATTTTTCTTCGAAAGTTTAGGAAATGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGAAATGGGTTTGTTGTA</pcr_primer_p1>
		<pcr_primer_p2>CCTTCGATTGTCTCATTTTATAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATCGAAATGGGTTTGTTGTAATGCTTGGTGGCTTATGTCCACAAATGACATTCAACCTTTGCCACTAGACTCTAGAAGAAAAAAAACCAAAAAAAAGAAAATCAGAAATCGTCCTCAACAATATGGAATGGACAATTGAGTAAATTGAGAATTCAGTTGCTGGTAATACTGTCGAATGCCGTTCTAAGATTAAGTGTCTTCTGTCGTGGACCGTTGTTTCAAAGTCTATAAAATGAGACAATCGAAGG</canonical_amplicon>
		<polymorphic_amplicon>ATCGAAATGGGTTTGTTGTAATGCTTGGTGGCTTATGTCCACAAATGACATTCAACCTTTGCCACTAGACTCTAGAAGAAAAAAAACCAAAAAAAAGAAAATCAGAAATCGTCCTCAACAATATGGAATGGACAATTGAGKAAATTGAGAATTCAGTTGCTGGTAATACTGTCGAATGCCGTTCTAAGATTAAGTGTCTTCTGTCGTGGACCGTTGTTTCAAAGTCTATAAAATGAGACAATCGAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13027</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>195335</contig_pos>
        <strand>+</strand>
        <context>TGTTTCCGAA[C/G]CAATCAGAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GACAAAAGCTATCAGGAAAACACATAAACCTAGATGAAATTGTTTCCGAA</left_flank>
        <right_flank>CAATCAGAGATATATCCAGAGAAGCTAGCCATAAATCACACTGAACAGTT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGTGGGGATATTTCAGGAGAAAAAAACCGAAATACAGTAATCCAGAAATTTCGAATAGTCAGCTTCATCAGAAGTAAATCATGAAAACTCAAACCAACCAGAAATATTCAAAAGTGTTTTTTTCGGACAGTGATGAAATAATAGCTGAACTTTTGGCGCTCTTTTTTGCCTCTTATCAGTTTCATTTTTTGTCGAGCCAATTTTTCTTGTCTTTTACTATCCTTTTCTGGAAAATTCCGACGACAAAAACGGAAAAAGAGAGCTACTGTCCTTTGAACTACCTCAATCTAAAAAGTCATTGAACTTTCAGTCAAATCAGAAAAAACCAATAAGTCTAGCAAACTGTAAAGTGCATATACTACGATAACAATCAGAAAATTTTTGATTAACCGTGGCAACTAGTGCCAGTGGAGGAAATTGGGAAAAAAAATGAAAAAAAGCTATTAGGACAAAAGCTATCAGGAAAACACATAAACCTAGATGAAATTGTTTCCGAAGCAATCAGAGATATATCCAGAGAAGCTAGCCATAAATCACACTGAACAGTTAATCCGCCTTTTTAGGCCAAACTTAGGGGGTGACCTAGGAAATGAAATGGAAAAACAGTTCACTGATAGTTTAAAACCAATTTTAGTTTCCTTTTCTCCTCTCCAAATTCAATGATATTTCTTCACTGCGCCCTTGTGCTCTCTGACGCCGACAAAAAATGACTTCTGGTGATAAGAAAAAACGCAACATTAAATTTGAATTTTTTTATTTCTGTTATCACGAAAAAAAATTCAAATTGACTAGGTTAGGCGCTAGTAATAGGATGATAGAGTGAGTGGCCAGAGGAATTTTTTGAGGACAGAGTTTTTTCGTTCTCGATAGTCTAATTTTTTTCGACTCGTGATGATAGCGTGAAAAACTGTTTAAAAATCCGGAAAAGTGCAAAGTAATTAACTGGGGGCGAGACGTTTTTGAGTCTTATCTATTTTCAAAAATTCACTTAAAATAAT</canonical>
            <polymorphic>GTGGTGGGGATATTTCAGGAGAAAAAAACCGAAATACAGTAATCCAGAAATTTCGAATAGTCAGCTTCATCAGAAGTAAATCATGAAAACTCAAACCAACCAGAAATATTCAAAAGTGTTTTTTTCGGACAGTGATGAAATAATAGCTGAACTTTTGGCGCTCTTTTTTGCCTCTTATCAGTTTCATTTTTTGTCGAGCCAATTTTTCTTGTCTTTTACTATCCTTTTCTGGAAAATTCCGACGACAAAAACGGAAAAAGAGAGCTACTGTCCTTTGAACTACCTCAATCTAAAAAGTCATTGAACTTTCAGTCAAATCAGAAAAAACCAATAAGTCTAGCAAACTGTAAAGTGCATATACTACGATAACAATCAGAAAATTTTTGATTAACCGTGGCAACTAGTGCCAGTGGAGGAAATTGGGAAAAAAAATGAAAAAAAGCTATTAGGACAAAAGCTATCAGGAAAACACATAAACCTAGATGAAATTGTTTCCGAASCAATCAGAGATATATCCAGAGAAGCTAGCCATAAATCACACTGAACAGTTAATCCGCCTTTTTAGGCCAAACTTAGGGGGTGACCTAGGAAATGAAATGGAAAAACAGTTCACTGATAGTTTAAAACCAATTTTAGTTTCCTTTTCTCCTCTCCAAATTCAATGATATTTCTTCACTGCGCCCTTGTGCTCTCTGACGCCGACAAAAAATGACTTCTGGTGATAAGAAAAAACGCAACATTAAATTTGAATTTTTTTATTTCTGTTATCACGAAAAAAAATTCAAATTGACTAGGTTAGGCGCTAGTAATAGGATGATAGAGTGAGTGGCCAGAGGAATTTTTTGAGGACAGAGTTTTTTCGTTCTCGATAGTCTAATTTTTTTCGACTCGTGATGATAGCGTGAAAAACTGTTTAAAAATCCGGAAAAGTGCAAAGTAATTAACTGGGGGCGAGACGTTTTTGAGTCTTATCTATTTTCAAAAATTCACTTAAAATAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTTTCAGTCAAATCAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>GGATTAACTGTTCAGTGTGATTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GAACTTTCAGTCAAATCAGAAAAAACCAATAAGTCTAGCAAACTGTAAAGTGCATATACTACGATAACAATCAGAAAATTTTTGATTAACCGTGGCAACTAGTGCCAGTGGAGGAAATTGGGAAAAAAAATGAAAAAAAGCTATTAGGACAAAAGCTATCAGGAAAACACATAAACCTAGATGAAATTGTTTCCGAAGCAATCAGAGATATATCCAGAGAAGCTAGCCATAAATCACACTGAACAGTTAATCC</canonical_amplicon>
		<polymorphic_amplicon>GAACTTTCAGTCAAATCAGAAAAAACCAATAAGTCTAGCAAACTGTAAAGTGCATATACTACGATAACAATCAGAAAATTTTTGATTAACCGTGGCAACTAGTGCCAGTGGAGGAAATTGGGAAAAAAAATGAAAAAAAGCTATTAGGACAAAAGCTATCAGGAAAACACATAAACCTAGATGAAATTGTTTCCGAASCAATCAGAGATATATCCAGAGAAGCTAGCCATAAATCACACTGAACAGTTAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13028</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>231217</contig_pos>
        <strand>+</strand>
        <context>TTATGCTCCA[A/G]TATTAATCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAACTTTAATCAGTGATTTAACGGTGCTATAATTTCTTATTATGCTCCA</left_flank>
        <right_flank>TATTAATCTACAACTATCCCCAAAACAAAATCCAATGAACGACTACTGTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGTTTTTTAAAGTTTTTCCACTTACTTTGCTGTTGTTGCTGCTGCCTTTGAGATTTCGGTACCATCTTTGGAGACGTCGATGGATGGCCAGCGCGAACTGGTGGCGGTGTTGACTCTACACCCCATCCCATCTTTGTTGTTTGCTGCACGACACTGTTTTTGAGGGAGGTCAAGTTGGAAAAGAGTTTGTCCTGCATAGTGAAGAATCCCTTTGAGGCTTGAGACTCGATTGACTGCTCTGATTGGACTGATTGCACATTCATCATATCTAGGATATCCGAGAAATCAGTTTTTGCTGCTAGCTTGGGGTTTTTCTGCATTGCATTTTTCATATATTCCTCAATTTTCTCTGCGGTGATTCGCTCATCTGGATTTGGAATGAGGCATTTTGCTGGAAAAGTTTAATATAAAATTGACAAAATTGAATGTACTGTGTTTCTCATGTTCATAACTTTAATCAGTGATTTAACGGTGCTATAATTTCTTATTATGCTCCAATATTAATCTACAACTATCCCCAAAACAAAATCCAATGAACGACTACTGTAAAACTGATACCAAGATAGTAATAAAAGTTTTATATGTTTTGCGCTGTGTAGAACTTGCAATAAAAAGTGTTGCTTTCTTTTGCTGGTGTAGCGAAAGAAAAAACCGTTCGTTGTTTGAATTGCAATTCTAATAAAAAGAATGAAACAAGGTTCTTCTGAACTGAGAAAAAAACTCTTTAGATAGACTAGTTTTAACATACTTTAAATTTTTCATCAAAATCCAAATCAACAAGATGCGGATCCTCGTCCTTTGTGAGCAAGATCTCATTATTGTATTATCAAAAACTCACTGATCAATTCGGCGAACGCTGACAATTGATTTTGTTGAACTGGAGGTGGCTTCTTGTATTTTCCATTGATAATTGCAAGGGCTGATCCGTCAAATGGATGCTCTCCAAAACATACAAAATATATCAAACATCCCATGGCCCAATTGTCTTGTTGCTTTCC</canonical>
            <polymorphic>TTTGTTTTTTAAAGTTTTTCCACTTACTTTGCTGTTGTTGCTGCTGCCTTTGAGATTTCGGTACCATCTTTGGAGACGTCGATGGATGGCCAGCGCGAACTGGTGGCGGTGTTGACTCTACACCCCATCCCATCTTTGTTGTTTGCTGCACGACACTGTTTTTGAGGGAGGTCAAGTTGGAAAAGAGTTTGTCCTGCATAGTGAAGAATCCCTTTGAGGCTTGAGACTCGATTGACTGCTCTGATTGGACTGATTGCACATTCATCATATCTAGGATATCCGAGAAATCAGTTTTTGCTGCTAGCTTGGGGTTTTTCTGCATTGCATTTTTCATATATTCCTCAATTTTCTCTGCGGTGATTCGCTCATCTGGATTTGGAATGAGGCATTTTGCTGGAAAAGTTTAATATAAAATTGACAAAATTGAATGTACTGTGTTTCTCATGTTCATAACTTTAATCAGTGATTTAACGGTGCTATAATTTCTTATTATGCTCCARTATTAATCTACAACTATCCCCAAAACAAAATCCAATGAACGACTACTGTAAAACTGATACCAAGATAGTAATAAAAGTTTTATATGTTTTGCGCTGTGTAGAACTTGCAATAAAAAGTGTTGCTTTCTTTTGCTGGTGTAGCGAAAGAAAAAACCGTTCGTTGTTTGAATTGCAATTCTAATAAAAAGAATGAAACAAGGTTCTTCTGAACTGAGAAAAAAACTCTTTAGATAGACTAGTTTTAACATACTTTAAATTTTTCATCAAAATCCAAATCAACAAGATGCGGATCCTCGTCCTTTGTGAGCAAGATCTCATTATTGTATTATCAAAAACTCACTGATCAATTCGGCGAACGCTGACAATTGATTTTGTTGAACTGGAGGTGGCTTCTTGTATTTTCCATTGATAATTGCAAGGGCTGATCCGTCAAATGGATGCTCTCCAAAACATACAAAATATATCAAACATCCCATGGCCCAATTGTCTTGTTGCTTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTTTGCTGGAAAAGTTTAATA</pcr_primer_p1>
		<pcr_primer_p2>CAAAAGAAAGCAACACTTTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CATTTTGCTGGAAAAGTTTAATATAAAATTGACAAAATTGAATGTACTGTGTTTCTCATGTTCATAACTTTAATCAGTGATTTAACGGTGCTATAATTTCTTATTATGCTCCAATATTAATCTACAACTATCCCCAAAACAAAATCCAATGAACGACTACTGTAAAACTGATACCAAGATAGTAATAAAAGTTTTATATGTTTTGCGCTGTGTAGAACTTGCAATAAAAAGTGTTGCTTTCTTTTG</canonical_amplicon>
		<polymorphic_amplicon>CATTTTGCTGGAAAAGTTTAATATAAAATTGACAAAATTGAATGTACTGTGTTTCTCATGTTCATAACTTTAATCAGTGATTTAACGGTGCTATAATTTCTTATTATGCTCCARTATTAATCTACAACTATCCCCAAAACAAAATCCAATGAACGACTACTGTAAAACTGATACCAAGATAGTAATAAAAGTTTTATATGTTTTGCGCTGTGTAGAACTTGCAATAAAAAGTGTTGCTTTCTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13029</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>231006</contig_pos>
        <strand>+</strand>
        <context>TCCGAGAAAT[C/G]AGTTTTTGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTCTGATTGGACTGATTGCACATTCATCATATCTAGGATATCCGAGAAAT</left_flank>
        <right_flank>AGTTTTTGCTGCTAGCTTGGGGTTTTTCTGCATTGCATTTTTCATATATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATTTTTTGTTTGAAACTGGAGGAGAAGATGCTACAGGTGCTGAGTTGAAATCACCCCACTCATTTCCAGCAGACGATGATCCGTTGTCCGTAGGCCAATCAGCTTCAAAAGTGGAAGATGGAGGCGCGTGGGATTGCACTGCTGGTGCTCGTGGAGTTGTAACTGCTGGAGAGGGTCTTGGTTGTTCTCCTAGAAAATAACGACAATAATTTGTTTTTTAAAGTTTTTCCACTTACTTTGCTGTTGTTGCTGCTGCCTTTGAGATTTCGGTACCATCTTTGGAGACGTCGATGGATGGCCAGCGCGAACTGGTGGCGGTGTTGACTCTACACCCCATCCCATCTTTGTTGTTTGCTGCACGACACTGTTTTTGAGGGAGGTCAAGTTGGAAAAGAGTTTGTCCTGCATAGTGAAGAATCCCTTTGAGGCTTGAGACTCGATTGACTGCTCTGATTGGACTGATTGCACATTCATCATATCTAGGATATCCGAGAAATCAGTTTTTGCTGCTAGCTTGGGGTTTTTCTGCATTGCATTTTTCATATATTCCTCAATTTTCTCTGCGGTGATTCGCTCATCTGGATTTGGAATGAGGCATTTTGCTGGAAAAGTTTAATATAAAATTGACAAAATTGAATGTACTGTGTTTCTCATGTTCATAACTTTAATCAGTGATTTAACGGTGCTATAATTTCTTATTATGCTCCAATATTAATCTACAACTATCCCCAAAACAAAATCCAATGAACGACTACTGTAAAACTGATACCAAGATAGTAATAAAAGTTTTATATGTTTTGCGCTGTGTAGAACTTGCAATAAAAAGTGTTGCTTTCTTTTGCTGGTGTAGCGAAAGAAAAAACCGTTCGTTGTTTGAATTGCAATTCTAATAAAAAGAATGAAACAAGGTTCTTCTGAACTGAGAAAAAAACTCTTTAGATAGACTAGTTTTAACATACTTTAAATTTTTCATCAAAATCCAAATCAACAAGATGCGG</canonical>
            <polymorphic>GTATTTTTTGTTTGAAACTGGAGGAGAAGATGCTACAGGTGCTGAGTTGAAATCACCCCACTCATTTCCAGCAGACGATGATCCGTTGTCCGTAGGCCAATCAGCTTCAAAAGTGGAAGATGGAGGCGCGTGGGATTGCACTGCTGGTGCTCGTGGAGTTGTAACTGCTGGAGAGGGTCTTGGTTGTTCTCCTAGAAAATAACGACAATAATTTGTTTTTTAAAGTTTTTCCACTTACTTTGCTGTTGTTGCTGCTGCCTTTGAGATTTCGGTACCATCTTTGGAGACGTCGATGGATGGCCAGCGCGAACTGGTGGCGGTGTTGACTCTACACCCCATCCCATCTTTGTTGTTTGCTGCACGACACTGTTTTTGAGGGAGGTCAAGTTGGAAAAGAGTTTGTCCTGCATAGTGAAGAATCCCTTTGAGGCTTGAGACTCGATTGACTGCTCTGATTGGACTGATTGCACATTCATCATATCTAGGATATCCGAGAAATSAGTTTTTGCTGCTAGCTTGGGGTTTTTCTGCATTGCATTTTTCATATATTCCTCAATTTTCTCTGCGGTGATTCGCTCATCTGGATTTGGAATGAGGCATTTTGCTGGAAAAGTTTAATATAAAATTGACAAAATTGAATGTACTGTGTTTCTCATGTTCATAACTTTAATCAGTGATTTAACGGTGCTATAATTTCTTATTATGCTCCAATATTAATCTACAACTATCCCCAAAACAAAATCCAATGAACGACTACTGTAAAACTGATACCAAGATAGTAATAAAAGTTTTATATGTTTTGCGCTGTGTAGAACTTGCAATAAAAAGTGTTGCTTTCTTTTGCTGGTGTAGCGAAAGAAAAAACCGTTCGTTGTTTGAATTGCAATTCTAATAAAAAGAATGAAACAAGGTTCTTCTGAACTGAGAAAAAAACTCTTTAGATAGACTAGTTTTAACATACTTTAAATTTTTCATCAAAATCCAAATCAACAAGATGCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATAGTGAAGAATCCCTTTGAG</pcr_primer_p1>
		<pcr_primer_p2>CATGAGAAACACAGTACATTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATAGTGAAGAATCCCTTTGAGGCTTGAGACTCGATTGACTGCTCTGATTGGACTGATTGCACATTCATCATATCTAGGATATCCGAGAAATCAGTTTTTGCTGCTAGCTTGGGGTTTTTCTGCATTGCATTTTTCATATATTCCTCAATTTTCTCTGCGGTGATTCGCTCATCTGGATTTGGAATGAGGCATTTTGCTGGAAAAGTTTAATATAAAATTGACAAAATTGAATGTACTGTGTTTCTCATG</canonical_amplicon>
		<polymorphic_amplicon>CATAGTGAAGAATCCCTTTGAGGCTTGAGACTCGATTGACTGCTCTGATTGGACTGATTGCACATTCATCATATCTAGGATATCCGAGAAATSAGTTTTTGCTGCTAGCTTGGGGTTTTTCTGCATTGCATTTTTCATATATTCCTCAATTTTCTCTGCGGTGATTCGCTCATCTGGATTTGGAATGAGGCATTTTGCTGGAAAAGTTTAATATAAAATTGACAAAATTGAATGTACTGTGTTTCTCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13030</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>240599</contig_pos>
        <strand>+</strand>
        <context>atatGACATG[C/T]CTCCAAGCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATATATATATATATATATATATATATATATATATATATATATATGACATG</left_flank>
        <right_flank>CTCCAAGCTATCAAATTGAACTAAAGTAACTCGGTTCCCTTAAGAGTCTC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGAATTATATAATGAATTTCTCTGAAGAAAAACAAAAAAATTTTCGGCGTGTTTTTCCTAGACGGTGTATGAATAGCTTCGAATACCGAACACGCACATAACCATACAAAAGTTGACTAAGTTCACTTATTTTTAGTTGAAAATGCCGAAATTCGGATTTTCAAAAAATGCAGTTGATTTTGTTGGATGAAGCAGAACATTTTGAGATCTATCAAACATAAATATAGCTTTTTTTAATTGTTGACAATTTTTCGTAAAAATTAATCAAATTGGATAAACCATTTGAAAGTGTCAAGATTCTGAATCCATTGCTATTTCTTGGAGTATTAGAACTTGGATCGTTTCGAACGGCATATCTGATTTAGATGCAAGTAAGTGAAAATTATGTGAAGTTTTTTCAGAATAAAAAAAGAAAAGCAGAACTGATGAAGTTCTAACCAATAATATATATATATATATATATATATATATATATATATATATATATATATGACATGTCTCCAAGCTATCAAATTGAACTAAAGTAACTCGGTTCCCTTAAGAGTCTCTTACAAGTATCGATTTATCGTCTCGATTTTCGTGCGTATTCAGTTAAATTTTTCGAAATGAAAATTCTCATTTTTAGATTCTTTCAAATGGGAAGGTAACAAAAAACTTCACGGAAATCATAAAAAACAAAAAAATAGACGCGGAAAGCCAAAACTCTTTCACATCTCCGATTTTTGAAACAGAGTAATAGTTGATAATTGATTGCATCCACAAAACTACTCTTAACTAATTAAAAGCAATTTTAGCGAATAAACATTACGTACTAATGGAATATTCTTCAATGAGTTCATGCTAACAAAAATGAAACTCTTACTGTATTTAATAATTTTTGAATCTTTAAAAAATTTAAACACTTACTGACTGGATCCGAGAATTCAAAGCTTGATCTTGAGCAAATCCCAAGTGAATAATATTTGGGGTACATCTTTTTAATTTCTTGATAGTGAAGA</canonical>
            <polymorphic>GATGAATTATATAATGAATTTCTCTGAAGAAAAACAAAAAAATTTTCGGCGTGTTTTTCCTAGACGGTGTATGAATAGCTTCGAATACCGAACACGCACATAACCATACAAAAGTTGACTAAGTTCACTTATTTTTAGTTGAAAATGCCGAAATTCGGATTTTCAAAAAATGCAGTTGATTTTGTTGGATGAAGCAGAACATTTTGAGATCTATCAAACATAAATATAGCTTTTTTTAATTGTTGACAATTTTTCGTAAAAATTAATCAAATTGGATAAACCATTTGAAAGTGTCAAGATTCTGAATCCATTGCTATTTCTTGGAGTATTAGAACTTGGATCGTTTCGAACGGCATATCTGATTTAGATGCAAGTAAGTGAAAATTATGTGAAGTTTTTTCAGAATAAAAAAAGAAAAGCAGAACTGATGAAGTTCTAACCAATAATATATATATATATATATATATATATATATATATATATATATATATATGACATGYCTCCAAGCTATCAAATTGAACTAAAGTAACTCGGTTCCCTTAAGAGTCTCTTACAAGTATCGATTTATCGTCTCGATTTTCGTGCGTATTCAGTTAAATTTTTCGAAATGAAAATTCTCATTTTTAGATTCTTTCAAATGGGAAGGTAACAAAAAACTTCACGGAAATCATAAAAAACAAAAAAATAGACGCGGAAAGCCAAAACTCTTTCACATCTCCGATTTTTGAAACAGAGTAATAGTTGATAATTGATTGCATCCACAAAACTACTCTTAACTAATTAAAAGCAATTTTAGCGAATAAACATTACGTACTAATGGAATATTCTTCAATGAGTTCATGCTAACAAAAATGAAACTCTTACTGTATTTAATAATTTTTGAATCTTTAAAAAATTTAAACACTTACTGACTGGATCCGAGAATTCAAAGCTTGATCTTGAGCAAATCCCAAGTGAATAATATTTGGGGTACATCTTTTTAATTTCTTGATAGTGAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACTGATGAAGTTCTAACCAATA</pcr_primer_p1>
		<pcr_primer_p2>ATCGGAGATGTGAAAGAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>GAACTGATGAAGTTCTAACCAATAATATATATATATATATATATATATATATATATATATATATATATATATGACATGTCTCCAAGCTATCAAATTGAACTAAAGTAACTCGGTTCCCTTAAGAGTCTCTTACAAGTATCGATTTATCGTCTCGATTTTCGTGCGTATTCAGTTAAATTTTTCGAAATGAAAATTCTCATTTTTAGATTCTTTCAAATGGGAAGGTAACAAAAAACTTCACGGAAATCATAAAAAACAAAAAAATAGACGCGGAAAGCCAAAACTCTTTCACATCTCCGAT</canonical_amplicon>
		<polymorphic_amplicon>GAACTGATGAAGTTCTAACCAATAATATATATATATATATATATATATATATATATATATATATATATATATGACATGYCTCCAAGCTATCAAATTGAACTAAAGTAACTCGGTTCCCTTAAGAGTCTCTTACAAGTATCGATTTATCGTCTCGATTTTCGTGCGTATTCAGTTAAATTTTTCGAAATGAAAATTCTCATTTTTAGATTCTTTCAAATGGGAAGGTAACAAAAAACTTCACGGAAATCATAAAAAACAAAAAAATAGACGCGGAAAGCCAAAACTCTTTCACATCTCCGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13066</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>241033</contig_pos>
        <strand>+</strand>
        <context>ATTCAAAGCT[C/T]GATCTTGAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTTTAAAAAATTTAAACACTTACTGACTGGATCCGAGAATTCAAAGCT</left_flank>
        <right_flank>GATCTTGAGCAAATCCCAAGTGAATAATATTTGGGGTACATCTTTTTAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTAACCAATAATATATATATATATATATATATATATATATATATATATATATATATATGACATGTCTCCAAGCTATCAAATTGAACTAAAGTAACTCGGTTCCCTTAAGAGTCTCTTACAAGTATCGATTTATCGTCTCGATTTTCGTGCGTATTCAGTTAAATTTTTCGAAATGAAAATTCTCATTTTTAGATTCTTTCAAATGGGAAGGTAACAAAAAACTTCACGGAAATCATAAAAAACAAAAAAATAGACGCGGAAAGCCAAAACTCTTTCACATCTCCGATTTTTGAAACAGAGTAATAGTTGATAATTGATTGCATCCACAAAACTACTCTTAACTAATTAAAAGCAATTTTAGCGAATAAACATTACGTACTAATGGAATATTCTTCAATGAGTTCATGCTAACAAAAATGAAACTCTTACTGTATTTAATAATTTTTGAATCTTTAAAAAATTTAAACACTTACTGACTGGATCCGAGAATTCAAAGCTTGATCTTGAGCAAATCCCAAGTGAATAATATTTGGGGTACATCTTTTTAATTTCTTGATAGTGAAGAAAAAAGAAAATATTCGAAAAACCTTGACGCTAAGACGTTTTTCACTTGTTTTCGCCTATCGGATCACACAATCTTGACGGATTAGTTTTTGAATATTTTTCCTCGCGGTTCGATTCATCTTCTTCACACTTTCACAGTTTTACGCTAGAGAAAGTTTGTTGAAATGTTTTTTTCTTAGAAAACATAAACTTATATACACTTTGCGAGGTTGAAACTTACCAGGATCATTAATATTTTCCAACCATATGTTCTTGAGATTCATAGTTTCTTCAGGGAATGAGTAACACAATGGATCTTTAGAGGGGATTTAAAAAGTACAAAATTTGTGTTCTGATTGGGACAAAAAAGAAGAAAAAGAATGCTTTACGGAATGCAATTTGGCATTTTAGAATACTCCCTTTTTTTGTTTTTTGCCCCCACTACTCTCTGATTAG</canonical>
            <polymorphic>TCTAACCAATAATATATATATATATATATATATATATATATATATATATATATATATATGACATGTCTCCAAGCTATCAAATTGAACTAAAGTAACTCGGTTCCCTTAAGAGTCTCTTACAAGTATCGATTTATCGTCTCGATTTTCGTGCGTATTCAGTTAAATTTTTCGAAATGAAAATTCTCATTTTTAGATTCTTTCAAATGGGAAGGTAACAAAAAACTTCACGGAAATCATAAAAAACAAAAAAATAGACGCGGAAAGCCAAAACTCTTTCACATCTCCGATTTTTGAAACAGAGTAATAGTTGATAATTGATTGCATCCACAAAACTACTCTTAACTAATTAAAAGCAATTTTAGCGAATAAACATTACGTACTAATGGAATATTCTTCAATGAGTTCATGCTAACAAAAATGAAACTCTTACTGTATTTAATAATTTTTGAATCTTTAAAAAATTTAAACACTTACTGACTGGATCCGAGAATTCAAAGCTYGATCTTGAGCAAATCCCAAGTGAATAATATTTGGGGTACATCTTTTTAATTTCTTGATAGTGAAGAAAAAAGAAAATATTCGAAAAACCTTGACGCTAAGACGTTTTTCACTTGTTTTCGCCTATCGGATCACACAATCTTGACGGATTAGTTTTTGAATATTTTTCCTCGCGGTTCGATTCATCTTCTTCACACTTTCACAGTTTTACGCTAGAGAAAGTTTGTTGAAATGTTTTTTTCTTAGAAAACATAAACTTATATACACTTTGCGAGGTTGAAACTTACCAGGATCATTAATATTTTCCAACCATATGTTCTTGAGATTCATAGTTTCTTCAGGGAATGAGTAACACAATGGATCTTTAGAGGGGATTTAAAAAGTACAAAATTTGTGTTCTGATTGGGACAAAAAAGAAGAAAAAGAATGCTTTACGGAATGCAATTTGGCATTTTAGAATACTCCCTTTTTTTGTTTTTTGCCCCCACTACTCTCTGATTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGCTAACAAAAATGAAACTCT</pcr_primer_p1>
		<pcr_primer_p2>AACTAATCCGTCAAGATTGTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATGCTAACAAAAATGAAACTCTTACTGTATTTAATAATTTTTGAATCTTTAAAAAATTTAAACACTTACTGACTGGATCCGAGAATTCAAAGCTTGATCTTGAGCAAATCCCAAGTGAATAATATTTGGGGTACATCTTTTTAATTTCTTGATAGTGAAGAAAAAAGAAAATATTCGAAAAACCTTGACGCTAAGACGTTTTTCACTTGTTTTCGCCTATCGGATCACACAATCTTGACGGATTAGTT</canonical_amplicon>
		<polymorphic_amplicon>CATGCTAACAAAAATGAAACTCTTACTGTATTTAATAATTTTTGAATCTTTAAAAAATTTAAACACTTACTGACTGGATCCGAGAATTCAAAGCTYGATCTTGAGCAAATCCCAAGTGAATAATATTTGGGGTACATCTTTTTAATTTCTTGATAGTGAAGAAAAAAGAAAATATTCGAAAAACCTTGACGCTAAGACGTTTTTCACTTGTTTTCGCCTATCGGATCACACAATCTTGACGGATTAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13108</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>242149</contig_pos>
        <strand>+</strand>
        <context>AATTTTTTTG[A/G]AAATGAGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGAAGGACATATTGCCATGGTTTCTGTTTTGAAGATAGAATTTTTTTG</left_flank>
        <right_flank>AAATGAGAATAGAGAAACCTCTAGAAGCAATGAATGAAAAACCAACACAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGACTTTAAAAGGCAGAAAAATGATTTTCTTTTTTAAAAGCCCGCCAAACTTTTTCACCTGGTTCATTAACTGAGAGAATATAAACTTTTGAGCTGAAAACTTCAGCCGTGTTCCAAAAGAATGTAAAAAAGCCATTGCATATAATTTCAGAAGTTATGCTTTCCGATAATGTGTTTTCTTATCCTTTTCCCCACATAACTTGTTCAATTTTTTTTTTCGGTTAAAAGTATCAAAGAAAGCAAAAACCAAGCACCTGATATTGAACAACAACAAAGTTCGATCAACTAAATGGGAAACAAGTATCAAATATATAAAAAAAACAACTAACCGGCTTTGTGGGTACTGAAACGCGACGCCATCGAATTTTCAGTTGTTCCAGCGCGGCACCATTCTGAAAAAAGAGCTTTTTGTTTTGTTTTGGAAAAAGTATACTTTGCTTCGGGCAGAAAGAAGGACATATTGCCATGGTTTCTGTTTTGAAGATAGAATTTTTTTGGAAATGAGAATAGAGAAACCTCTAGAAGCAATGAATGAAAAACCAACACATGAACGAATGAATGAATGAAAGGTATTGATTTCAATAGAGAATTAATTTGAAACCTTGCGACGATTCTAATGAGAATACATCGTTTGAAAATGTTTTTATTTTTCATAAGAAACAAACAAGGTCAAGTAAAACTACTAAAGAACACATTTGTTAAATGCAAAGTGTATTTTAAAACGCTGGACATTCCATGCAATTATCTGATTCTAATTGTTTCAGGGGTTTTATCGTAATGGCATGATCTCGAAAAGAAACAGAACCTAAGAAAAAATTCAAACGTGTTCTAACTGCAGAGAACAACTGTTAAAAGAGTATAAATTCAACGGCAGACTGCCTAAAACGAGAGTAAGAGAATTGAATTAAAAAAGGTAACTGACTTAACACTGGTGGAGACACGCAACAACTGGCAACACAGAGATGGAAGTGTAAAAAAGAACAAAAGTTGTGATAAAG</canonical>
            <polymorphic>CTAGACTTTAAAAGGCAGAAAAATGATTTTCTTTTTTAAAAGCCCGCCAAACTTTTTCACCTGGTTCATTAACTGAGAGAATATAAACTTTTGAGCTGAAAACTTCAGCCGTGTTCCAAAAGAATGTAAAAAAGCCATTGCATATAATTTCAGAAGTTATGCTTTCCGATAATGTGTTTTCTTATCCTTTTCCCCACATAACTTGTTCAATTTTTTTTTTCGGTTAAAAGTATCAAAGAAAGCAAAAACCAAGCACCTGATATTGAACAACAACAAAGTTCGATCAACTAAATGGGAAACAAGTATCAAATATATAAAAAAAACAACTAACCGGCTTTGTGGGTACTGAAACGCGACGCCATCGAATTTTCAGTTGTTCCAGCGCGGCACCATTCTGAAAAAAGAGCTTTTTGTTTTGTTTTGGAAAAAGTATACTTTGCTTCGGGCAGAAAGAAGGACATATTGCCATGGTTTCTGTTTTGAAGATAGAATTTTTTTGRAAATGAGAATAGAGAAACCTCTAGAAGCAATGAATGAAAAACCAACACATGAACGAATGAATGAATGAAAGGTATTGATTTCAATAGAGAATTAATTTGAAACCTTGCGACGATTCTAATGAGAATACATCGTTTGAAAATGTTTTTATTTTTCATAAGAAACAAACAAGGTCAAGTAAAACTACTAAAGAACACATTTGTTAAATGCAAAGTGTATTTTAAAACGCTGGACATTCCATGCAATTATCTGATTCTAATTGTTTCAGGGGTTTTATCGTAATGGCATGATCTCGAAAAGAAACAGAACCTAAGAAAAAATTCAAACGTGTTCTAACTGCAGAGAACAACTGTTAAAAGAGTATAAATTCAACGGCAGACTGCCTAAAACGAGAGTAAGAGAATTGAATTAAAAAAGGTAACTGACTTAACACTGGTGGAGACACGCAACAACTGGCAACACAGAGATGGAAGTGTAAAAAAGAACAAAAGTTGTGATAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAGCTTTTTGTTTTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAACATTTTCAAACGATGTATTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAGCTTTTTGTTTTGTTTTGGAAAAAGTATACTTTGCTTCGGGCAGAAAGAAGGACATATTGCCATGGTTTCTGTTTTGAAGATAGAATTTTTTTGGAAATGAGAATAGAGAAACCTCTAGAAGCAATGAATGAAAAACCAACACATGAACGAATGAATGAATGAAAGGTATTGATTTCAATAGAGAATTAATTTGAAACCTTGCGACGATTCTAATGAGAATACATCGTTTGAAAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAGCTTTTTGTTTTGTTTTGGAAAAAGTATACTTTGCTTCGGGCAGAAAGAAGGACATATTGCCATGGTTTCTGTTTTGAAGATAGAATTTTTTTGRAAATGAGAATAGAGAAACCTCTAGAAGCAATGAATGAAAAACCAACACATGAACGAATGAATGAATGAAAGGTATTGATTTCAATAGAGAATTAATTTGAAACCTTGCGACGATTCTAATGAGAATACATCGTTTGAAAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13109</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>243377</contig_pos>
        <strand>+</strand>
        <context>AGGATGACCT[A/C]AGAGCACACA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTAACACCTAACGTCGAACTTTTGAGCCCTTCCACAAAAAAGGATGACCT</left_flank>
        <right_flank>AGAGCACACACACAAAAAGGTAGCGCATAAAAATGAAGAAAAGAAGAAGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTTATTCAGTGCTCAAATCATTCAGCTGAAATGGAGAAAAATAATTGGAAAATGGGAAATAAGCAGAAAAAAGAGAAGTTGTCACCTTGGTATGACATGTATCCCGATGTTGACGCAATTTGTAAAGCCAATTTAAAATTCATCCAGTTGTATAAGAAGAGTGAACTCCAAATGATGTATGCTCAAGGATGAGAAATATGTCAAAAATAGTCATATTTCCGCATATATGCCAAAAACATATTCTAGCTTAGAATATCTAATGTACTTTTAGGTCAGGTCAAAGCATAAAAATCTTAATGAATGAGCTTATTTTTGGAACCAGAAAAACGTATTTCACGATGATTTGAGACTGACAAAAACTCCCCAGAGAGTCCAAAAACAAACAAGGAAGTGGGATAAAAAGTTCTGCTTGTTAACACGGCTCTTATGTATGTTTGATGGGTCCTCTAACACCTAACGTCGAACTTTTGAGCCCTTCCACAAAAAAGGATGACCTCAGAGCACACACACAAAAAGGTAGCGCATAAAAATGAAGAAAAGAAGAAGGACAGAAGACTTGTTCGTTTTTTTCTATACTCCTCCAAGCCAATCCATCCCAACCTTTTATGGATGATGTCATGGAAAAAATTGCCGGCGAAAAGCAAGAAAAATTGAATTTTATTTGGGGATGTTCAGCGTTGATTTGACACCTTTGATTGGCGGTGGGAGGAAGGCTGTTTGCTCAAATGAATCCGGATATGAGAACAAACAAGATAAGAGACACACAAAATGAGTGGCCACTGATTGCTGCTCCTGGGAGTTTTGGCAGACAGAAATAAGCGGAAAAATTTAACAAGGAATTAGAAAAAATACCAAGCTAGCCGGATAAGATCATTTCCCAGGAAAAATTGGAGAAAAACGTTCGAAAAGTTTTAGGGGTAAACGAGGAATCATACATAGACCAAAACTTGTCAAATTTGTCCTCGAAATAATTTCACAGACTTTTGAGATTGGAAAT</canonical>
            <polymorphic>TTTCTTATTCAGTGCTCAAATCATTCAGCTGAAATGGAGAAAAATAATTGGAAAATGGGAAATAAGCAGAAAAAAGAGAAGTTGTCACCTTGGTATGACATGTATCCCGATGTTGACGCAATTTGTAAAGCCAATTTAAAATTCATCCAGTTGTATAAGAAGAGTGAACTCCAAATGATGTATGCTCAAGGATGAGAAATATGTCAAAAATAGTCATATTTCCGCATATATGCCAAAAACATATTCTAGCTTAGAATATCTAATGTACTTTTAGGTCAGGTCAAAGCATAAAAATCTTAATGAATGAGCTTATTTTTGGAACCAGAAAAACGTATTTCACGATGATTTGAGACTGACAAAAACTCCCCAGAGAGTCCAAAAACAAACAAGGAAGTGGGATAAAAAGTTCTGCTTGTTAACACGGCTCTTATGTATGTTTGATGGGTCCTCTAACACCTAACGTCGAACTTTTGAGCCCTTCCACAAAAAAGGATGACCTMAGAGCACACACACAAAAAGGTAGCGCATAAAAATGAAGAAAAGAAGAAGGACAGAAGACTTGTTCGTTTTTTTCTATACTCCTCCAAGCCAATCCATCCCAACCTTTTATGGATGATGTCATGGAAAAAATTGCCGGCGAAAAGCAAGAAAAATTGAATTTTATTTGGGGATGTTCAGCGTTGATTTGACACCTTTGATTGGCGGTGGGAGGAAGGCTGTTTGCTCAAATGAATCCGGATATGAGAACAAACAAGATAAGAGACACACAAAATGAGTGGCCACTGATTGCTGCTCCTGGGAGTTTTGGCAGACAGAAATAAGCGGAAAAATTTAACAAGGAATTAGAAAAAATACCAAGCTAGCCGGATAAGATCATTTCCCAGGAAAAATTGGAGAAAAACGTTCGAAAAGTTTTAGGGGTAAACGAGGAATCATACATAGACCAAAACTTGTCAAATTTGTCCTCGAAATAATTTCACAGACTTTTGAGATTGGAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATGATTTGAGACTGACAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GGCTTGGAGGAGTATAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATGATTTGAGACTGACAAAAACTCCCCAGAGAGTCCAAAAACAAACAAGGAAGTGGGATAAAAAGTTCTGCTTGTTAACACGGCTCTTATGTATGTTTGATGGGTCCTCTAACACCTAACGTCGAACTTTTGAGCCCTTCCACAAAAAAGGATGACCTCAGAGCACACACACAAAAAGGTAGCGCATAAAAATGAAGAAAAGAAGAAGGACAGAAGACTTGTTCGTTTTTTTCTATACTCCTCCAAGCC</canonical_amplicon>
		<polymorphic_amplicon>GATGATTTGAGACTGACAAAAACTCCCCAGAGAGTCCAAAAACAAACAAGGAAGTGGGATAAAAAGTTCTGCTTGTTAACACGGCTCTTATGTATGTTTGATGGGTCCTCTAACACCTAACGTCGAACTTTTGAGCCCTTCCACAAAAAAGGATGACCTMAGAGCACACACACAAAAAGGTAGCGCATAAAAATGAAGAAAAGAAGAAGGACAGAAGACTTGTTCGTTTTTTTCTATACTCCTCCAAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13110</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>243511</contig_pos>
        <strand>+</strand>
        <context>GAAAAAATTG[C/T]CGGCGAAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAAGCCAATCCATCCCAACCTTTTATGGATGATGTCATGGAAAAAATTG</left_flank>
        <right_flank>CGGCGAAAAGCAAGAAAAATTGAATTTTATTTGGGGATGTTCAGCGTTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAAAATTCATCCAGTTGTATAAGAAGAGTGAACTCCAAATGATGTATGCTCAAGGATGAGAAATATGTCAAAAATAGTCATATTTCCGCATATATGCCAAAAACATATTCTAGCTTAGAATATCTAATGTACTTTTAGGTCAGGTCAAAGCATAAAAATCTTAATGAATGAGCTTATTTTTGGAACCAGAAAAACGTATTTCACGATGATTTGAGACTGACAAAAACTCCCCAGAGAGTCCAAAAACAAACAAGGAAGTGGGATAAAAAGTTCTGCTTGTTAACACGGCTCTTATGTATGTTTGATGGGTCCTCTAACACCTAACGTCGAACTTTTGAGCCCTTCCACAAAAAAGGATGACCTCAGAGCACACACACAAAAAGGTAGCGCATAAAAATGAAGAAAAGAAGAAGGACAGAAGACTTGTTCGTTTTTTTCTATACTCCTCCAAGCCAATCCATCCCAACCTTTTATGGATGATGTCATGGAAAAAATTGCCGGCGAAAAGCAAGAAAAATTGAATTTTATTTGGGGATGTTCAGCGTTGATTTGACACCTTTGATTGGCGGTGGGAGGAAGGCTGTTTGCTCAAATGAATCCGGATATGAGAACAAACAAGATAAGAGACACACAAAATGAGTGGCCACTGATTGCTGCTCCTGGGAGTTTTGGCAGACAGAAATAAGCGGAAAAATTTAACAAGGAATTAGAAAAAATACCAAGCTAGCCGGATAAGATCATTTCCCAGGAAAAATTGGAGAAAAACGTTCGAAAAGTTTTAGGGGTAAACGAGGAATCATACATAGACCAAAACTTGTCAAATTTGTCCTCGAAATAATTTCACAGACTTTTGAGATTGGAAATAGAAGTTTTAATACGTTGAATTTAAAATAAATTTGAAGAAATATTCGGAATAACTTTAAAAATTGAATTTTTCAAAAAACATGAAGATTGAAAGTTTTTAAGCTAGGTACCAGTTTTTGAAATTGAGAATAGCA</canonical>
            <polymorphic>TTTAAAATTCATCCAGTTGTATAAGAAGAGTGAACTCCAAATGATGTATGCTCAAGGATGAGAAATATGTCAAAAATAGTCATATTTCCGCATATATGCCAAAAACATATTCTAGCTTAGAATATCTAATGTACTTTTAGGTCAGGTCAAAGCATAAAAATCTTAATGAATGAGCTTATTTTTGGAACCAGAAAAACGTATTTCACGATGATTTGAGACTGACAAAAACTCCCCAGAGAGTCCAAAAACAAACAAGGAAGTGGGATAAAAAGTTCTGCTTGTTAACACGGCTCTTATGTATGTTTGATGGGTCCTCTAACACCTAACGTCGAACTTTTGAGCCCTTCCACAAAAAAGGATGACCTCAGAGCACACACACAAAAAGGTAGCGCATAAAAATGAAGAAAAGAAGAAGGACAGAAGACTTGTTCGTTTTTTTCTATACTCCTCCAAGCCAATCCATCCCAACCTTTTATGGATGATGTCATGGAAAAAATTGYCGGCGAAAAGCAAGAAAAATTGAATTTTATTTGGGGATGTTCAGCGTTGATTTGACACCTTTGATTGGCGGTGGGAGGAAGGCTGTTTGCTCAAATGAATCCGGATATGAGAACAAACAAGATAAGAGACACACAAAATGAGTGGCCACTGATTGCTGCTCCTGGGAGTTTTGGCAGACAGAAATAAGCGGAAAAATTTAACAAGGAATTAGAAAAAATACCAAGCTAGCCGGATAAGATCATTTCCCAGGAAAAATTGGAGAAAAACGTTCGAAAAGTTTTAGGGGTAAACGAGGAATCATACATAGACCAAAACTTGTCAAATTTGTCCTCGAAATAATTTCACAGACTTTTGAGATTGGAAATAGAAGTTTTAATACGTTGAATTTAAAATAAATTTGAAGAAATATTCGGAATAACTTTAAAAATTGAATTTTTCAAAAAACATGAAGATTGAAAGTTTTTAAGCTAGGTACCAGTTTTTGAAATTGAGAATAGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 270 129 101</canonical_bands>
                <polymorphic_bands>601 270 129</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 273 226</canonical_bands>
                <polymorphic_bands>727 273</polymorphic_bands>
            </assay>
            <assay>
                <site>GCCGGC</site>
                <isoschizomers>
                    <enzyme>MroNI</enzyme>
                    <enzyme>NaeI</enzyme>
                    <enzyme>NgoAIV</enzyme>
                    <enzyme>NgoMIV</enzyme>
                    <enzyme>PdiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATGAAGAAAAGAAGAAGGAC</pcr_primer_p1>
		<pcr_primer_p2>CCACTCATTTTGTGTGTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATGAAGAAAAGAAGAAGGACAGAAGACTTGTTCGTTTTTTTCTATACTCCTCCAAGCCAATCCATCCCAACCTTTTATGGATGATGTCATGGAAAAAATTGCCGGCGAAAAGCAAGAAAAATTGAATTTTATTTGGGGATGTTCAGCGTTGATTTGACACCTTTGATTGGCGGTGGGAGGAAGGCTGTTTGCTCAAATGAATCCGGATATGAGAACAAACAAGATAAGAGACACACAAAATGAGTGG</canonical_amplicon>
		<polymorphic_amplicon>AAAATGAAGAAAAGAAGAAGGACAGAAGACTTGTTCGTTTTTTTCTATACTCCTCCAAGCCAATCCATCCCAACCTTTTATGGATGATGTCATGGAAAAAATTGYCGGCGAAAAGCAAGAAAAATTGAATTTTATTTGGGGATGTTCAGCGTTGATTTGACACCTTTGATTGGCGGTGGGAGGAAGGCTGTTTGCTCAAATGAATCCGGATATGAGAACAAACAAGATAAGAGACACACAAAATGAGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13111</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>243538</contig_pos>
        <strand>+</strand>
        <context>AAATTGAATT[C/T]TATTTGGGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGATGATGTCATGGAAAAAATTGCCGGCGAAAAGCAAGAAAAATTGAATT</left_flank>
        <right_flank>TATTTGGGGATGTTCAGCGTTGATTTGACACCTTTGATTGGCGGTGGGAG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGTGAACTCCAAATGATGTATGCTCAAGGATGAGAAATATGTCAAAAATAGTCATATTTCCGCATATATGCCAAAAACATATTCTAGCTTAGAATATCTAATGTACTTTTAGGTCAGGTCAAAGCATAAAAATCTTAATGAATGAGCTTATTTTTGGAACCAGAAAAACGTATTTCACGATGATTTGAGACTGACAAAAACTCCCCAGAGAGTCCAAAAACAAACAAGGAAGTGGGATAAAAAGTTCTGCTTGTTAACACGGCTCTTATGTATGTTTGATGGGTCCTCTAACACCTAACGTCGAACTTTTGAGCCCTTCCACAAAAAAGGATGACCTCAGAGCACACACACAAAAAGGTAGCGCATAAAAATGAAGAAAAGAAGAAGGACAGAAGACTTGTTCGTTTTTTTCTATACTCCTCCAAGCCAATCCATCCCAACCTTTTATGGATGATGTCATGGAAAAAATTGCCGGCGAAAAGCAAGAAAAATTGAATTTTATTTGGGGATGTTCAGCGTTGATTTGACACCTTTGATTGGCGGTGGGAGGAAGGCTGTTTGCTCAAATGAATCCGGATATGAGAACAAACAAGATAAGAGACACACAAAATGAGTGGCCACTGATTGCTGCTCCTGGGAGTTTTGGCAGACAGAAATAAGCGGAAAAATTTAACAAGGAATTAGAAAAAATACCAAGCTAGCCGGATAAGATCATTTCCCAGGAAAAATTGGAGAAAAACGTTCGAAAAGTTTTAGGGGTAAACGAGGAATCATACATAGACCAAAACTTGTCAAATTTGTCCTCGAAATAATTTCACAGACTTTTGAGATTGGAAATAGAAGTTTTAATACGTTGAATTTAAAATAAATTTGAAGAAATATTCGGAATAACTTTAAAAATTGAATTTTTCAAAAAACATGAAGATTGAAAGTTTTTAAGCTAGGTACCAGTTTTTGAAATTGAGAATAGCATGGTTCTCAGTTTTTGGGATTGAAAAC</canonical>
            <polymorphic>GAGTGAACTCCAAATGATGTATGCTCAAGGATGAGAAATATGTCAAAAATAGTCATATTTCCGCATATATGCCAAAAACATATTCTAGCTTAGAATATCTAATGTACTTTTAGGTCAGGTCAAAGCATAAAAATCTTAATGAATGAGCTTATTTTTGGAACCAGAAAAACGTATTTCACGATGATTTGAGACTGACAAAAACTCCCCAGAGAGTCCAAAAACAAACAAGGAAGTGGGATAAAAAGTTCTGCTTGTTAACACGGCTCTTATGTATGTTTGATGGGTCCTCTAACACCTAACGTCGAACTTTTGAGCCCTTCCACAAAAAAGGATGACCTCAGAGCACACACACAAAAAGGTAGCGCATAAAAATGAAGAAAAGAAGAAGGACAGAAGACTTGTTCGTTTTTTTCTATACTCCTCCAAGCCAATCCATCCCAACCTTTTATGGATGATGTCATGGAAAAAATTGCCGGCGAAAAGCAAGAAAAATTGAATTYTATTTGGGGATGTTCAGCGTTGATTTGACACCTTTGATTGGCGGTGGGAGGAAGGCTGTTTGCTCAAATGAATCCGGATATGAGAACAAACAAGATAAGAGACACACAAAATGAGTGGCCACTGATTGCTGCTCCTGGGAGTTTTGGCAGACAGAAATAAGCGGAAAAATTTAACAAGGAATTAGAAAAAATACCAAGCTAGCCGGATAAGATCATTTCCCAGGAAAAATTGGAGAAAAACGTTCGAAAAGTTTTAGGGGTAAACGAGGAATCATACATAGACCAAAACTTGTCAAATTTGTCCTCGAAATAATTTCACAGACTTTTGAGATTGGAAATAGAAGTTTTAATACGTTGAATTTAAAATAAATTTGAAGAAATATTCGGAATAACTTTAAAAATTGAATTTTTCAAAAAACATGAAGATTGAAAGTTTTTAAGCTAGGTACCAGTTTTTGAAATTGAGAATAGCATGGTTCTCAGTTTTTGGGATTGAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>495 172 128 96 62 36 11</canonical_bands>
                <polymorphic_bands>667 128 96 62 36 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATGAAGAAAAGAAGAAGGAC</pcr_primer_p1>
		<pcr_primer_p2>CCACTCATTTTGTGTGTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATGAAGAAAAGAAGAAGGACAGAAGACTTGTTCGTTTTTTTCTATACTCCTCCAAGCCAATCCATCCCAACCTTTTATGGATGATGTCATGGAAAAAATTGCCGGCGAAAAGCAAGAAAAATTGAATTTTATTTGGGGATGTTCAGCGTTGATTTGACACCTTTGATTGGCGGTGGGAGGAAGGCTGTTTGCTCAAATGAATCCGGATATGAGAACAAACAAGATAAGAGACACACAAAATGAGTGG</canonical_amplicon>
		<polymorphic_amplicon>AAAATGAAGAAAAGAAGAAGGACAGAAGACTTGTTCGTTTTTTTCTATACTCCTCCAAGCCAATCCATCCCAACCTTTTATGGATGATGTCATGGAAAAAATTGCCGGCGAAAAGCAAGAAAAATTGAATTYTATTTGGGGATGTTCAGCGTTGATTTGACACCTTTGATTGGCGGTGGGAGGAAGGCTGTTTGCTCAAATGAATCCGGATATGAGAACAAACAAGATAAGAGACACACAAAATGAGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13112</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>246939</contig_pos>
        <strand>+</strand>
        <context>TAGAAAAATT[C/T]AATTTTTTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCACTGTTCTTGAACAATGAGCTTGAATTTTAGAATGACATAGAAAAATT</left_flank>
        <right_flank>AATTTTTTGGCAGATATAAAAATGAAAATTGCAGAATTGAAAGTGATGTC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGGTAATGAGAAATGAGATGGAGCTTTTCTATTCATTATATTCATTTTAAGGACAGAAGAACAGAATATGAAAATGGGCAAAGAGGTGGTGGTGGACAGCAGGAGCAACTGAAACAAAGAAGCAAGAGTATGCCAAGAAGTGAGTTGATGCGGAAACTGAAAAGTGTCACGGGCACCTTTTGTAATTATTGCCCCGAATTCTAGTTCCGTGTAGAGCTTCATCATCTTGGGAGAACAGAAAACAAATTGTTTTCTGTTATTAGGTTTATCACAAAAAAAGAGCCTGAGAATTGAAGCAATGACATAAAACCCGTATATATTAACAGAATGCAGGAAAACGAGAAGAAGAAAGAAAAACAAGCAATCTGCGTCATTCAAATTTAATTTCAGTTCTAGCTAATAACAGCTTTTTTCACCTGATTTCGACAAAACAAAACATTATGAGAGGCACTGTTCTTGAACAATGAGCTTGAATTTTAGAATGACATAGAAAAATTCAATTTTTTGGCAGATATAAAAATGAAAATTGCAGAATTGAAAGTGATGTCAATAATTAAAATAGTTTGCGACGTCATTTGGTGAGAGAATTACTGAATAAGAAGGCCACGTTCATCTAATTTCAATTTTTTGAGGACATATGTCCTTTTTAAAACTGAACGCAGTTAATTGATAATTGATTAATGAAGTTTGGAACAGAATTCAGAATTCCTACTTGAATATTTCCGGAGTTTTTAAAGGAATAATATCCCAATCGGTATTGTATATTCAAATTTCTTTTTCGTAATTAGAATTTTTCAGACTACAGTATGTTAAAGGCGCACGCAAAAAGTTTCTTCGTGGCTCTCGAATATGTTTTGCGGTTTTGAAACTAGTTTGTTAATTTTTCACCACTTTTGGTGATGGCACAGTGGGTATCTAATCAAAAATCTTCGAAAATTGGAATAATTACGAAAATTTGAAGTATTCAAAATTGTAATATTCGGAAACACGGCAATTTC</canonical>
            <polymorphic>AATGGTAATGAGAAATGAGATGGAGCTTTTCTATTCATTATATTCATTTTAAGGACAGAAGAACAGAATATGAAAATGGGCAAAGAGGTGGTGGTGGACAGCAGGAGCAACTGAAACAAAGAAGCAAGAGTATGCCAAGAAGTGAGTTGATGCGGAAACTGAAAAGTGTCACGGGCACCTTTTGTAATTATTGCCCCGAATTCTAGTTCCGTGTAGAGCTTCATCATCTTGGGAGAACAGAAAACAAATTGTTTTCTGTTATTAGGTTTATCACAAAAAAAGAGCCTGAGAATTGAAGCAATGACATAAAACCCGTATATATTAACAGAATGCAGGAAAACGAGAAGAAGAAAGAAAAACAAGCAATCTGCGTCATTCAAATTTAATTTCAGTTCTAGCTAATAACAGCTTTTTTCACCTGATTTCGACAAAACAAAACATTATGAGAGGCACTGTTCTTGAACAATGAGCTTGAATTTTAGAATGACATAGAAAAATTYAATTTTTTGGCAGATATAAAAATGAAAATTGCAGAATTGAAAGTGATGTCAATAATTAAAATAGTTTGCGACGTCATTTGGTGAGAGAATTACTGAATAAGAAGGCCACGTTCATCTAATTTCAATTTTTTGAGGACATATGTCCTTTTTAAAACTGAACGCAGTTAATTGATAATTGATTAATGAAGTTTGGAACAGAATTCAGAATTCCTACTTGAATATTTCCGGAGTTTTTAAAGGAATAATATCCCAATCGGTATTGTATATTCAAATTTCTTTTTCGTAATTAGAATTTTTCAGACTACAGTATGTTAAAGGCGCACGCAAAAAGTTTCTTCGTGGCTCTCGAATATGTTTTGCGGTTTTGAAACTAGTTTGTTAATTTTTCACCACTTTTGGTGATGGCACAGTGGGTATCTAATCAAAAATCTTCGAAAATTGGAATAATTACGAAAATTTGAAGTATTCAAAATTGTAATATTCGGAAACACGGCAATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>203 198 181 164 95 65 46 21 20 7</canonical_bands>
                <polymorphic_bands>224 198 181 164 95 65 46 20 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAAACAAAACATTATGAGAGG</pcr_primer_p1>
		<pcr_primer_p2>AATTATCAATTAACTGCGTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACAAAACAAAACATTATGAGAGGCACTGTTCTTGAACAATGAGCTTGAATTTTAGAATGACATAGAAAAATTCAATTTTTTGGCAGATATAAAAATGAAAATTGCAGAATTGAAAGTGATGTCAATAATTAAAATAGTTTGCGACGTCATTTGGTGAGAGAATTACTGAATAAGAAGGCCACGTTCATCTAATTTCAATTTTTTGAGGACATATGTCCTTTTTAAAACTGAACGCAGTTAATTGATAATT</canonical_amplicon>
		<polymorphic_amplicon>ACAAAACAAAACATTATGAGAGGCACTGTTCTTGAACAATGAGCTTGAATTTTAGAATGACATAGAAAAATTYAATTTTTTGGCAGATATAAAAATGAAAATTGCAGAATTGAAAGTGATGTCAATAATTAAAATAGTTTGCGACGTCATTTGGTGAGAGAATTACTGAATAAGAAGGCCACGTTCATCTAATTTCAATTTTTTGAGGACATATGTCCTTTTTAAAACTGAACGCAGTTAATTGATAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13113</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>262070</contig_pos>
        <strand>+</strand>
        <context>GATTCTTCTT[G/T]TCATCATTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATCTCCACGTCTGTTTATCTGACACCTACATTCATTTCCGATTCTTCTT</left_flank>
        <right_flank>TCATCATTATTTTTCTATTTTTCCAGTCATTTCCCTTTCAGTTTTCTGTA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTAAATGCCGTTGCTCTAATACAGATGTTTTTCTCGTTCGAGCAATTTTCGCAATCAAGCTTGGAGTTTTCAATTTTAAAAGTTCTAGAAATTCTAGCGATCGGAATGGTACCAAGAAAACTGAATTTTAATCAGAATAACCCACCAAATTCAAAGAAATTAATTTCTTTTGGTACAATGGCGGATTCAAGGACGAGGCCTCGTAAATCGACACGAACGACGCCCGCAAAATTTTCAGGTGCCAGTTTTTTAAATTTGACAATTTGACAAAAAATAAAAGGGCCGGCCCTTCTAATAAAGGTTTTACGGTATGCTAAACCTTGCTCAACTCCTTTTTACTCGCCTATTTTTGTGGTCTTGAACTTTTTGATTATGGCTAACCCAGTTTTCAGTTGATTCCGCATCCGTTGTGTTTTCATCCTTGAAAAGCATCATCAACTTTGAGAAAATCTCCACGTCTGTTTATCTGACACCTACATTCATTTCCGATTCTTCTTTTCATCATTATTTTTCTATTTTTCCAGTCATTTCCCTTTCAGTTTTCTGTACAAAAACATCATTGAGTCCCGTAAACACATTTCATTTTTTGGGAGGAATAGGAAAGAGATGAACACGCCATTGTTCAACGGTGTCCGAATTGAATGTCCAATTTTTTTTGGAGAAAGGGAGCTTTTTAAAATTTTTGGACCCATTTTGTGCGATTAGGCACATGAAAGCTTCCAAAATTAAAAAAAAGAGAGACAAAAAAGTCATTTGGTAGTTTTATTTTACTCGGTTAATCCAACATTACTCATTTATTCATCAGAGTCGGAGCCCAGTGTCAGTCTGACCTTCAGTTTTTTGCCGGTTTCATGTCAAACAAAATATATATATATATATATAGAAATCGAACGAGAGAATGGGATGAGGTTACTGATCCGAAACAAAACACATCATGCATTTGATCAATTCTTTGTGAGACTTAAAGACAGAGATGATGCGCTTTGCCGCTCTTTTGG</canonical>
            <polymorphic>ATTTAAATGCCGTTGCTCTAATACAGATGTTTTTCTCGTTCGAGCAATTTTCGCAATCAAGCTTGGAGTTTTCAATTTTAAAAGTTCTAGAAATTCTAGCGATCGGAATGGTACCAAGAAAACTGAATTTTAATCAGAATAACCCACCAAATTCAAAGAAATTAATTTCTTTTGGTACAATGGCGGATTCAAGGACGAGGCCTCGTAAATCGACACGAACGACGCCCGCAAAATTTTCAGGTGCCAGTTTTTTAAATTTGACAATTTGACAAAAAATAAAAGGGCCGGCCCTTCTAATAAAGGTTTTACGGTATGCTAAACCTTGCTCAACTCCTTTTTACTCGCCTATTTTTGTGGTCTTGAACTTTTTGATTATGGCTAACCCAGTTTTCAGTTGATTCCGCATCCGTTGTGTTTTCATCCTTGAAAAGCATCATCAACTTTGAGAAAATCTCCACGTCTGTTTATCTGACACCTACATTCATTTCCGATTCTTCTTKTCATCATTATTTTTCTATTTTTCCAGTCATTTCCCTTTCAGTTTTCTGTACAAAAACATCATTGAGTCCCGTAAACACATTTCATTTTTTGGGAGGAATAGGAAAGAGATGAACACGCCATTGTTCAACGGTGTCCGAATTGAATGTCCAATTTTTTTTGGAGAAAGGGAGCTTTTTAAAATTTTTGGACCCATTTTGTGCGATTAGGCACATGAAAGCTTCCAAAATTAAAAAAAAGAGAGACAAAAAAGTCATTTGGTAGTTTTATTTTACTCGGTTAATCCAACATTACTCATTTATTCATCAGAGTCGGAGCCCAGTGTCAGTCTGACCTTCAGTTTTTTGCCGGTTTCATGTCAAACAAAATATATATATATATATATAGAAATCGAACGAGAGAATGGGATGAGGTTACTGATCCGAAACAAAACACATCATGCATTTGATCAATTCTTTGTGAGACTTAAAGACAGAGATGATGCGCTTTGCCGCTCTTTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCATCAACTTTGAGAAAATCT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTAAAAAGCTCCCTTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CATCATCAACTTTGAGAAAATCTCCACGTCTGTTTATCTGACACCTACATTCATTTCCGATTCTTCTTTTCATCATTATTTTTCTATTTTTCCAGTCATTTCCCTTTCAGTTTTCTGTACAAAAACATCATTGAGTCCCGTAAACACATTTCATTTTTTGGGAGGAATAGGAAAGAGATGAACACGCCATTGTTCAACGGTGTCCGAATTGAATGTCCAATTTTTTTTGGAGAAAGGGAGCTTTTTAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CATCATCAACTTTGAGAAAATCTCCACGTCTGTTTATCTGACACCTACATTCATTTCCGATTCTTCTTKTCATCATTATTTTTCTATTTTTCCAGTCATTTCCCTTTCAGTTTTCTGTACAAAAACATCATTGAGTCCCGTAAACACATTTCATTTTTTGGGAGGAATAGGAAAGAGATGAACACGCCATTGTTCAACGGTGTCCGAATTGAATGTCCAATTTTTTTTGGAGAAAGGGAGCTTTTTAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13114</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>390230</contig_pos>
        <strand>+</strand>
        <context>TTTTGTCTTA[C/T]TAGAGAAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAATGAAAACATGAAGTGTAAATTGTCCGAGATGTTTCATTTTGTCTTA</left_flank>
        <right_flank>TAGAGAAAGAAGGGCCGAACCGGGGTGTCAATCAGTAATCGGCTAATAGC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCTGCATAAAGGACTGTTTGTACGTCCTCTCATAATCACCAAAGTATCAGTTTTCGCCAGACATTACGCTGAAATTTTTGTAGCGGTTTTTTGCAAGAAAGTCACAAACATTTCAAACAGGTGTCAATCAAGGTTCAGTGTAACCAGAGAGAAGACTCTTGTTTGCACTTTATTTTTTATCTGTCTGCCACTGAAAAAAATTGCTGAGAATCGAAGAGAGATAGACTTTGAAGAGACGATCAACGTTCAGTGGCAACATTTCATGAAGGGAACTTGCGTAGGAAGAAGTTGGGAATGAGATGTCTGCACTGTGTAAAATTTTCGACCTTTCTGACACAAACAACTTTTTCGGATTTTTTTTTTGGAGAACAAAGTCTAGCGGGTTCAGAAGTAAACAATTTTGCAAAAAAATATATATGGAGAGCTGGATCAGAAAATGTGCAGTTTTTAATGAAAACATGAAGTGTAAATTGTCCGAGATGTTTCATTTTGTCTTACTAGAGAAAGAAGGGCCGAACCGGGGTGTCAATCAGTAATCGGCTAATAGCTGCAAAAACTAGGAATTTTCTAAATTATGCGATTGCAAACTTTTTAATCTGTGTCTGTTTTAGAGCTTCCAAAGTTTTCAAAGCGGTCGGAACCTTTACAGCCAAGCTCCAGACTCCAAAAATGCTCAAAATATCCAAAAAAAAAAAACATACGAAAATTGCGTTATTGTATTTTTTTTGACAGGTACTGCACATGCACCAAGCCGTATAGGAGGTTTTAAAAGAATTTAAAAGCCCAACATGAGATTACAGTAATTATTTCATGCCTTTTAAAAGTTTTCGATTTGTAAAAAATGCAAATTTCAGCAAGTTTATAGATCAATTCGACCAAAATAGAAAAAGGCAAACCAGAGTATTCCAACAAATTTCTGTGAAACGGTGGAATTTACCAGAATATTTTCCACGTAAAAGTTATACGAATTTTTAAATTCTTACACAACAATTTGAAGG</canonical>
            <polymorphic>CTCCTGCATAAAGGACTGTTTGTACGTCCTCTCATAATCACCAAAGTATCAGTTTTCGCCAGACATTACGCTGAAATTTTTGTAGCGGTTTTTTGCAAGAAAGTCACAAACATTTCAAACAGGTGTCAATCAAGGTTCAGTGTAACCAGAGAGAAGACTCTTGTTTGCACTTTATTTTTTATCTGTCTGCCACTGAAAAAAATTGCTGAGAATCGAAGAGAGATAGACTTTGAAGAGACGATCAACGTTCAGTGGCAACATTTCATGAAGGGAACTTGCGTAGGAAGAAGTTGGGAATGAGATGTCTGCACTGTGTAAAATTTTCGACCTTTCTGACACAAACAACTTTTTCGGATTTTTTTTTTGGAGAACAAAGTCTAGCGGGTTCAGAAGTAAACAATTTTGCAAAAAAATATATATGGAGAGCTGGATCAGAAAATGTGCAGTTTTTAATGAAAACATGAAGTGTAAATTGTCCGAGATGTTTCATTTTGTCTTAYTAGAGAAAGAAGGGCCGAACCGGGGTGTCAATCAGTAATCGGCTAATAGCTGCAAAAACTAGGAATTTTCTAAATTATGCGATTGCAAACTTTTTAATCTGTGTCTGTTTTAGAGCTTCCAAAGTTTTCAAAGCGGTCGGAACCTTTACAGCCAAGCTCCAGACTCCAAAAATGCTCAAAATATCCAAAAAAAAAAAACATACGAAAATTGCGTTATTGTATTTTTTTTGACAGGTACTGCACATGCACCAAGCCGTATAGGAGGTTTTAAAAGAATTTAAAAGCCCAACATGAGATTACAGTAATTATTTCATGCCTTTTAAAAGTTTTCGATTTGTAAAAAATGCAAATTTCAGCAAGTTTATAGATCAATTCGACCAAAATAGAAAAAGGCAAACCAGAGTATTCCAACAAATTTCTGTGAAACGGTGGAATTTACCAGAATATTTTCCACGTAAAAGTTATACGAATTTTTAAATTCTTACACAACAATTTGAAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>441 378 122 59</canonical_bands>
                <polymorphic_bands>441 378 181</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAAATGTGCAGTTTTTAATGA</pcr_primer_p1>
		<pcr_primer_p2>GTTGGGCTTTTAAATTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>357</pcr_amplicon_size>
		<canonical_amplicon>AGAAAATGTGCAGTTTTTAATGAAAACATGAAGTGTAAATTGTCCGAGATGTTTCATTTTGTCTTACTAGAGAAAGAAGGGCCGAACCGGGGTGTCAATCAGTAATCGGCTAATAGCTGCAAAAACTAGGAATTTTCTAAATTATGCGATTGCAAACTTTTTAATCTGTGTCTGTTTTAGAGCTTCCAAAGTTTTCAAAGCGGTCGGAACCTTTACAGCCAAGCTCCAGACTCCAAAAATGCTCAAAATATCCAAAAAAAAAAAACATACGAAAATTGCGTTATTGTATTTTTTTTGACAGGTACTGCACATGCACCAAGCCGTATAGGAGGTTTTAAAAGAATTTAAAAGCCCAAC</canonical_amplicon>
		<polymorphic_amplicon>AGAAAATGTGCAGTTTTTAATGAAAACATGAAGTGTAAATTGTCCGAGATGTTTCATTTTGTCTTAYTAGAGAAAGAAGGGCCGAACCGGGGTGTCAATCAGTAATCGGCTAATAGCTGCAAAAACTAGGAATTTTCTAAATTATGCGATTGCAAACTTTTTAATCTGTGTCTGTTTTAGAGCTTCCAAAGTTTTCAAAGCGGTCGGAACCTTTACAGCCAAGCTCCAGACTCCAAAAATGCTCAAAATATCCAAAAAAAAAAAACATACGAAAATTGCGTTATTGTATTTTTTTTGACAGGTACTGCACATGCACCAAGCCGTATAGGAGGTTTTAAAAGAATTTAAAAGCCCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13115</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>392695</contig_pos>
        <strand>+</strand>
        <context>CCCCTCTTCG[G/T]GTCGCTTCTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCGAAACCGCTGAGCTTTGTGCCAAGATGTTTGCTAGAACCCCTCTTCG</left_flank>
        <right_flank>GTCGCTTCTATTGATGATGCTGAATTTTTGAAAGTTGTAAAAATTGGAAG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACCTGGACGAGTGATAACAAAGCGGAAGCAACTGTAAATGTCATTCAGAATAGATCAGAATTTCTAACCGCTCGTCTTGTTTTTGTAAGTTTTCAGGTGCTCTCGATCAGTATAGCTTTCCTATTTTTCAGTCATCCTTGGATGGAACCAATACTTCTCAGAAGCTTCCTACCAACCAACTTCTCCCAGTCACCCCAATTGAGAAATTCTTGAACCAGCAGAGGCATGAAGCCAATACCACTCGTCCAACTGTTCCAGAACTTGGTGCGATTCAGCTTCCAGTTGTCCAGGTAAACAAATAAACTCATTTCATTATTTGAAAAATAATATTTACAGGAAGGAGAACAACAGATGTCTTCCACAATTATTGAGACCGCAACCATTGCCCAACCAGAGCATGAAAACCCATATGGATCGGTTTTTGGAGGGTTTTTGGTCAGAAAGGGACTCGAAACCGCTGAGCTTTGTGCCAAGATGTTTGCTAGAACCCCTCTTCGGGTCGCTTCTATTGATGATGCTGAATTTTTGAAAGTTGTAAAAATTGGAAGCATTCTCAAATTCAGTGCTTTTATTTGCAATGTTGATAACAAAGAGAAAAAGTTCCAGGTGAGTCAAAAACAATTTCTATGCGAAATGTTAAAATCTAATCTTATGTATTTTCAGATCAGCTCCCAAGTCGAAGTCTATAACACCGAATCCAACACTTTTGAACTCTGCGATCGCTTCCTGTTCACATTCGAAACCAAAGAAGAGATCAATCTTCCACAACTGGTCCCACACAACATGCAAGAATTTGTTGCACAATGGAAAGCAAAGAACATTGCAAAAGCAAACTAATTGTTTATAATTTTTTTTTCATTTTTACTTCCTCCCAATCATATTCTATACTAGAATCTTGTCACAGTCTTTTCGACTCTAAACACAATGTGCCATTTTGTTCTGTGAACACAATAAAATTTATCTTCCCTGAAACACAAAAGTGTTCCATTTTCAGAAAC</canonical>
            <polymorphic>TCACCTGGACGAGTGATAACAAAGCGGAAGCAACTGTAAATGTCATTCAGAATAGATCAGAATTTCTAACCGCTCGTCTTGTTTTTGTAAGTTTTCAGGTGCTCTCGATCAGTATAGCTTTCCTATTTTTCAGTCATCCTTGGATGGAACCAATACTTCTCAGAAGCTTCCTACCAACCAACTTCTCCCAGTCACCCCAATTGAGAAATTCTTGAACCAGCAGAGGCATGAAGCCAATACCACTCGTCCAACTGTTCCAGAACTTGGTGCGATTCAGCTTCCAGTTGTCCAGGTAAACAAATAAACTCATTTCATTATTTGAAAAATAATATTTACAGGAAGGAGAACAACAGATGTCTTCCACAATTATTGAGACCGCAACCATTGCCCAACCAGAGCATGAAAACCCATATGGATCGGTTTTTGGAGGGTTTTTGGTCAGAAAGGGACTCGAAACCGCTGAGCTTTGTGCCAAGATGTTTGCTAGAACCCCTCTTCGKGTCGCTTCTATTGATGATGCTGAATTTTTGAAAGTTGTAAAAATTGGAAGCATTCTCAAATTCAGTGCTTTTATTTGCAATGTTGATAACAAAGAGAAAAAGTTCCAGGTGAGTCAAAAACAATTTCTATGCGAAATGTTAAAATCTAATCTTATGTATTTTCAGATCAGCTCCCAAGTCGAAGTCTATAACACCGAATCCAACACTTTTGAACTCTGCGATCGCTTCCTGTTCACATTCGAAACCAAAGAAGAGATCAATCTTCCACAACTGGTCCCACACAACATGCAAGAATTTGTTGCACAATGGAAAGCAAAGAACATTGCAAAAGCAAACTAATTGTTTATAATTTTTTTTTCATTTTTACTTCCTCCCAATCATATTCTATACTAGAATCTTGTCACAGTCTTTTCGACTCTAAACACAATGTGCCATTTTGTTCTGTGAACACAATAAAATTTATCTTCCCTGAAACACAAAAGTGTTCCATTTTCAGAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>504 263 233</canonical_bands>
                <polymorphic_bands>737 263</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTTACAGGAAGGAGAACAACA</pcr_primer_p1>
		<pcr_primer_p2>AAATAAAAGCACTGAATTTGAGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TATTTACAGGAAGGAGAACAACAGATGTCTTCCACAATTATTGAGACCGCAACCATTGCCCAACCAGAGCATGAAAACCCATATGGATCGGTTTTTGGAGGGTTTTTGGTCAGAAAGGGACTCGAAACCGCTGAGCTTTGTGCCAAGATGTTTGCTAGAACCCCTCTTCGGGTCGCTTCTATTGATGATGCTGAATTTTTGAAAGTTGTAAAAATTGGAAGCATTCTCAAATTCAGTGCTTTTATTT</canonical_amplicon>
		<polymorphic_amplicon>TATTTACAGGAAGGAGAACAACAGATGTCTTCCACAATTATTGAGACCGCAACCATTGCCCAACCAGAGCATGAAAACCCATATGGATCGGTTTTTGGAGGGTTTTTGGTCAGAAAGGGACTCGAAACCGCTGAGCTTTGTGCCAAGATGTTTGCTAGAACCCCTCTTCGKGTCGCTTCTATTGATGATGCTGAATTTTTGAAAGTTGTAAAAATTGGAAGCATTCTCAAATTCAGTGCTTTTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13116</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>392564</contig_pos>
        <strand>+</strand>
        <context>TTCCACAATT[A/G]TTGAGACCGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAAAAATAATATTTACAGGAAGGAGAACAACAGATGTCTTCCACAATT</left_flank>
        <right_flank>TTGAGACCGCAACCATTGCCCAACCAGAGCATGAAAACCCATATGGATCG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACCTTTCATTGAAGACCTTCGAAACTGGAACGCTTCCAAGAATGTTTGTCACTGCTCGCTTCCACCAGACAAGCCTCTCTCATGGATACGGTCTCTCCCCATATCGCGATATTGTTTTGAGAGGAAAAGTCACCTGGACGAGTGATAACAAAGCGGAAGCAACTGTAAATGTCATTCAGAATAGATCAGAATTTCTAACCGCTCGTCTTGTTTTTGTAAGTTTTCAGGTGCTCTCGATCAGTATAGCTTTCCTATTTTTCAGTCATCCTTGGATGGAACCAATACTTCTCAGAAGCTTCCTACCAACCAACTTCTCCCAGTCACCCCAATTGAGAAATTCTTGAACCAGCAGAGGCATGAAGCCAATACCACTCGTCCAACTGTTCCAGAACTTGGTGCGATTCAGCTTCCAGTTGTCCAGGTAAACAAATAAACTCATTTCATTATTTGAAAAATAATATTTACAGGAAGGAGAACAACAGATGTCTTCCACAATTATTGAGACCGCAACCATTGCCCAACCAGAGCATGAAAACCCATATGGATCGGTTTTTGGAGGGTTTTTGGTCAGAAAGGGACTCGAAACCGCTGAGCTTTGTGCCAAGATGTTTGCTAGAACCCCTCTTCGGGTCGCTTCTATTGATGATGCTGAATTTTTGAAAGTTGTAAAAATTGGAAGCATTCTCAAATTCAGTGCTTTTATTTGCAATGTTGATAACAAAGAGAAAAAGTTCCAGGTGAGTCAAAAACAATTTCTATGCGAAATGTTAAAATCTAATCTTATGTATTTTCAGATCAGCTCCCAAGTCGAAGTCTATAACACCGAATCCAACACTTTTGAACTCTGCGATCGCTTCCTGTTCACATTCGAAACCAAAGAAGAGATCAATCTTCCACAACTGGTCCCACACAACATGCAAGAATTTGTTGCACAATGGAAAGCAAAGAACATTGCAAAAGCAAACTAATTGTTTATAATTTTTTTTTCATTTTTACTT</canonical>
            <polymorphic>AGACCTTTCATTGAAGACCTTCGAAACTGGAACGCTTCCAAGAATGTTTGTCACTGCTCGCTTCCACCAGACAAGCCTCTCTCATGGATACGGTCTCTCCCCATATCGCGATATTGTTTTGAGAGGAAAAGTCACCTGGACGAGTGATAACAAAGCGGAAGCAACTGTAAATGTCATTCAGAATAGATCAGAATTTCTAACCGCTCGTCTTGTTTTTGTAAGTTTTCAGGTGCTCTCGATCAGTATAGCTTTCCTATTTTTCAGTCATCCTTGGATGGAACCAATACTTCTCAGAAGCTTCCTACCAACCAACTTCTCCCAGTCACCCCAATTGAGAAATTCTTGAACCAGCAGAGGCATGAAGCCAATACCACTCGTCCAACTGTTCCAGAACTTGGTGCGATTCAGCTTCCAGTTGTCCAGGTAAACAAATAAACTCATTTCATTATTTGAAAAATAATATTTACAGGAAGGAGAACAACAGATGTCTTCCACAATTRTTGAGACCGCAACCATTGCCCAACCAGAGCATGAAAACCCATATGGATCGGTTTTTGGAGGGTTTTTGGTCAGAAAGGGACTCGAAACCGCTGAGCTTTGTGCCAAGATGTTTGCTAGAACCCCTCTTCGGGTCGCTTCTATTGATGATGCTGAATTTTTGAAAGTTGTAAAAATTGGAAGCATTCTCAAATTCAGTGCTTTTATTTGCAATGTTGATAACAAAGAGAAAAAGTTCCAGGTGAGTCAAAAACAATTTCTATGCGAAATGTTAAAATCTAATCTTATGTATTTTCAGATCAGCTCCCAAGTCGAAGTCTATAACACCGAATCCAACACTTTTGAACTCTGCGATCGCTTCCTGTTCACATTCGAAACCAAAGAAGAGATCAATCTTCCACAACTGGTCCCACACAACATGCAAGAATTTGTTGCACAATGGAAAGCAAAGAACATTGCAAAAGCAAACTAATTGTTTATAATTTTTTTTTCATTTTTACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCCAGGTAAACAAATAAACTC</pcr_primer_p1>
		<pcr_primer_p2>ACTTTCAAAAATTCAGCATCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTCCAGGTAAACAAATAAACTCATTTCATTATTTGAAAAATAATATTTACAGGAAGGAGAACAACAGATGTCTTCCACAATTATTGAGACCGCAACCATTGCCCAACCAGAGCATGAAAACCCATATGGATCGGTTTTTGGAGGGTTTTTGGTCAGAAAGGGACTCGAAACCGCTGAGCTTTGTGCCAAGATGTTTGCTAGAACCCCTCTTCGGGTCGCTTCTATTGATGATGCTGAATTTTTGAAAGT</canonical_amplicon>
		<polymorphic_amplicon>TGTCCAGGTAAACAAATAAACTCATTTCATTATTTGAAAAATAATATTTACAGGAAGGAGAACAACAGATGTCTTCCACAATTRTTGAGACCGCAACCATTGCCCAACCAGAGCATGAAAACCCATATGGATCGGTTTTTGGAGGGTTTTTGGTCAGAAAGGGACTCGAAACCGCTGAGCTTTGTGCCAAGATGTTTGCTAGAACCCCTCTTCGGGTCGCTTCTATTGATGATGCTGAATTTTTGAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13117</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>400478</contig_pos>
        <strand>+</strand>
        <context>AAGATTTTTT[A/T]AAAAATTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCTCTAAACTTGAAATATAAATGTTTTGAGCTCACACAAAGATTTTTT</left_flank>
        <right_flank>AAAAATTTCTCATTTTTATTTTTATCTTCTGATCCCAACAACTCTATTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGAGTATCAGTAGCAAAAATCATGCTTTCAGTGAAAAAAAAGCAATTTTCAAAGATGATTTTCACAACTTTTAGTACGTTTCAGAAAATCTATTTTGTTGTGTTTCACGTAGAATTGAATCAAACTTCCTGTTTCACTTAATATCTCGAAATTTTTACAACAGTTTGAATGAATTTAAGTAGAAGTTAAGACTGATATAACTTTACTGAAACTGGCGAGCGACTTCGAAACTTGTCTCACGCCTTTAGATAGTCTCTTCATACCTAATCCTAAAATTTGAAATACATTTCGTTGTTTTGAAAAATTTTCAGCTGATATTCTAGTTTTTACATCAAAAATGACAGTATTCCTCTCTGAGCGAGCTGAGTTTTGCAAAATGTCTTTCAGTTTCTTTTTTTCTGCTTATTTTCGGATTTCAAGTTAAAAAATTTTTAAGTTGAAACTTGGTTTCTCTAAACTTGAAATATAAATGTTTTGAGCTCACACAAAGATTTTTTAAAAAATTTCTCATTTTTATTTTTATCTTCTGATCCCAACAACTCTATTTTTGTGTCATTGTCATTTTTGTACATAATGATTTTATTTTTTCAAAAAATAAACGTGTTCGATTTTTTAATTTCGTGGTTCTTTTTTTCTCAAAACTTGCAGCTGTGTCAACTTGACAAAAAAATGACCTCAAATAAAAACGATGCATATCTTTTTATGCTACCTCCCGTCAAGGCTATCTTGCAAATGTAAATAACATGTTTTTTTGACAGAGGAAAATCCGTCTTGTAGTCGTCTTCGCATTTTTGTTTTTGGATGGAGCCCGTCTCATTTGCAATCCACATTTTTTGTCAAGAAACTGTAGCTTTTTCATCGTACTACTACTACATATATCCCTTTCCCAGCCACTTTCCTCTTCAAACCCGTTCATTTTCACAAATCTCAATTAATCTTCTGTCAATCTGAATGTCCTGCTTCTCCTCGTCCAACAATATCTCTCACCTCACCAACCC</canonical>
            <polymorphic>TATGAGTATCAGTAGCAAAAATCATGCTTTCAGTGAAAAAAAAGCAATTTTCAAAGATGATTTTCACAACTTTTAGTACGTTTCAGAAAATCTATTTTGTTGTGTTTCACGTAGAATTGAATCAAACTTCCTGTTTCACTTAATATCTCGAAATTTTTACAACAGTTTGAATGAATTTAAGTAGAAGTTAAGACTGATATAACTTTACTGAAACTGGCGAGCGACTTCGAAACTTGTCTCACGCCTTTAGATAGTCTCTTCATACCTAATCCTAAAATTTGAAATACATTTCGTTGTTTTGAAAAATTTTCAGCTGATATTCTAGTTTTTACATCAAAAATGACAGTATTCCTCTCTGAGCGAGCTGAGTTTTGCAAAATGTCTTTCAGTTTCTTTTTTTCTGCTTATTTTCGGATTTCAAGTTAAAAAATTTTTAAGTTGAAACTTGGTTTCTCTAAACTTGAAATATAAATGTTTTGAGCTCACACAAAGATTTTTTWAAAAATTTCTCATTTTTATTTTTATCTTCTGATCCCAACAACTCTATTTTTGTGTCATTGTCATTTTTGTACATAATGATTTTATTTTTTCAAAAAATAAACGTGTTCGATTTTTTAATTTCGTGGTTCTTTTTTTCTCAAAACTTGCAGCTGTGTCAACTTGACAAAAAAATGACCTCAAATAAAAACGATGCATATCTTTTTATGCTACCTCCCGTCAAGGCTATCTTGCAAATGTAAATAACATGTTTTTTTGACAGAGGAAAATCCGTCTTGTAGTCGTCTTCGCATTTTTGTTTTTGGATGGAGCCCGTCTCATTTGCAATCCACATTTTTTGTCAAGAAACTGTAGCTTTTTCATCGTACTACTACTACATATATCCCTTTCCCAGCCACTTTCCTCTTCAAACCCGTTCATTTTCACAAATCTCAATTAATCTTCTGTCAATCTGAATGTCCTGCTTCTCCTCGTCCAACAATATCTCTCACCTCACCAACCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>319 235 140 117 66 64 37 11 11</canonical_bands>
                <polymorphic_bands>319 235 181 140 66 37 11 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTTGGTTTCTCTAAACTTGAA</pcr_primer_p1>
		<pcr_primer_p2>ATCGTTTTTATTTGAGGTCATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACTTGGTTTCTCTAAACTTGAAATATAAATGTTTTGAGCTCACACAAAGATTTTTTAAAAAATTTCTCATTTTTATTTTTATCTTCTGATCCCAACAACTCTATTTTTGTGTCATTGTCATTTTTGTACATAATGATTTTATTTTTTCAAAAAATAAACGTGTTCGATTTTTTAATTTCGTGGTTCTTTTTTTCTCAAAACTTGCAGCTGTGTCAACTTGACAAAAAAATGACCTCAAATAAAAACGAT</canonical_amplicon>
		<polymorphic_amplicon>AACTTGGTTTCTCTAAACTTGAAATATAAATGTTTTGAGCTCACACAAAGATTTTTTWAAAAATTTCTCATTTTTATTTTTATCTTCTGATCCCAACAACTCTATTTTTGTGTCATTGTCATTTTTGTACATAATGATTTTATTTTTTCAAAAAATAAACGTGTTCGATTTTTTAATTTCGTGGTTCTTTTTTTCTCAAAACTTGCAGCTGTGTCAACTTGACAAAAAAATGACCTCAAATAAAAACGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13118</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>400412</contig_pos>
        <strand>+</strand>
        <context>TAAAAAATTT[G/T]TAAGTTGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCAGTTTCTTTTTTTCTGCTTATTTTCGGATTTCAAGTTAAAAAATTT</left_flank>
        <right_flank>TAAGTTGAAACTTGGTTTCTCTAAACTTGAAATATAAATGTTTTGAGCTC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCAGGATACATTAAGAACGCCTTCTAAAAATTTAAGAATCCACTTGCTAGTTTTAGCCGAGCTATATGAGTATCAGTAGCAAAAATCATGCTTTCAGTGAAAAAAAAGCAATTTTCAAAGATGATTTTCACAACTTTTAGTACGTTTCAGAAAATCTATTTTGTTGTGTTTCACGTAGAATTGAATCAAACTTCCTGTTTCACTTAATATCTCGAAATTTTTACAACAGTTTGAATGAATTTAAGTAGAAGTTAAGACTGATATAACTTTACTGAAACTGGCGAGCGACTTCGAAACTTGTCTCACGCCTTTAGATAGTCTCTTCATACCTAATCCTAAAATTTGAAATACATTTCGTTGTTTTGAAAAATTTTCAGCTGATATTCTAGTTTTTACATCAAAAATGACAGTATTCCTCTCTGAGCGAGCTGAGTTTTGCAAAATGTCTTTCAGTTTCTTTTTTTCTGCTTATTTTCGGATTTCAAGTTAAAAAATTTTTAAGTTGAAACTTGGTTTCTCTAAACTTGAAATATAAATGTTTTGAGCTCACACAAAGATTTTTTAAAAAATTTCTCATTTTTATTTTTATCTTCTGATCCCAACAACTCTATTTTTGTGTCATTGTCATTTTTGTACATAATGATTTTATTTTTTCAAAAAATAAACGTGTTCGATTTTTTAATTTCGTGGTTCTTTTTTTCTCAAAACTTGCAGCTGTGTCAACTTGACAAAAAAATGACCTCAAATAAAAACGATGCATATCTTTTTATGCTACCTCCCGTCAAGGCTATCTTGCAAATGTAAATAACATGTTTTTTTGACAGAGGAAAATCCGTCTTGTAGTCGTCTTCGCATTTTTGTTTTTGGATGGAGCCCGTCTCATTTGCAATCCACATTTTTTGTCAAGAAACTGTAGCTTTTTCATCGTACTACTACTACATATATCCCTTTCCCAGCCACTTTCCTCTTCAAACCCGTTCATTTTCACAAATCTCAAT</canonical>
            <polymorphic>CTTCAGGATACATTAAGAACGCCTTCTAAAAATTTAAGAATCCACTTGCTAGTTTTAGCCGAGCTATATGAGTATCAGTAGCAAAAATCATGCTTTCAGTGAAAAAAAAGCAATTTTCAAAGATGATTTTCACAACTTTTAGTACGTTTCAGAAAATCTATTTTGTTGTGTTTCACGTAGAATTGAATCAAACTTCCTGTTTCACTTAATATCTCGAAATTTTTACAACAGTTTGAATGAATTTAAGTAGAAGTTAAGACTGATATAACTTTACTGAAACTGGCGAGCGACTTCGAAACTTGTCTCACGCCTTTAGATAGTCTCTTCATACCTAATCCTAAAATTTGAAATACATTTCGTTGTTTTGAAAAATTTTCAGCTGATATTCTAGTTTTTACATCAAAAATGACAGTATTCCTCTCTGAGCGAGCTGAGTTTTGCAAAATGTCTTTCAGTTTCTTTTTTTCTGCTTATTTTCGGATTTCAAGTTAAAAAATTTKTAAGTTGAAACTTGGTTTCTCTAAACTTGAAATATAAATGTTTTGAGCTCACACAAAGATTTTTTAAAAAATTTCTCATTTTTATTTTTATCTTCTGATCCCAACAACTCTATTTTTGTGTCATTGTCATTTTTGTACATAATGATTTTATTTTTTCAAAAAATAAACGTGTTCGATTTTTTAATTTCGTGGTTCTTTTTTTCTCAAAACTTGCAGCTGTGTCAACTTGACAAAAAAATGACCTCAAATAAAAACGATGCATATCTTTTTATGCTACCTCCCGTCAAGGCTATCTTGCAAATGTAAATAACATGTTTTTTTGACAGAGGAAAATCCGTCTTGTAGTCGTCTTCGCATTTTTGTTTTTGGATGGAGCCCGTCTCATTTGCAATCCACATTTTTTGTCAAGAAACTGTAGCTTTTTCATCGTACTACTACTACATATATCCCTTTCCCAGCCACTTTCCTCTTCAAACCCGTTCATTTTCACAAATCTCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>319 235 172 117 64 37 21 13 11 11</canonical_bands>
                <polymorphic_bands>319 235 172 117 75 37 21 13 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGCCTTTAGATAGTCTCTTCAT</pcr_primer_p1>
		<pcr_primer_p2>TGTGTGAGCTCAAAACATTTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACGCCTTTAGATAGTCTCTTCATACCTAATCCTAAAATTTGAAATACATTTCGTTGTTTTGAAAAATTTTCAGCTGATATTCTAGTTTTTACATCAAAAATGACAGTATTCCTCTCTGAGCGAGCTGAGTTTTGCAAAATGTCTTTCAGTTTCTTTTTTTCTGCTTATTTTCGGATTTCAAGTTAAAAAATTTTTAAGTTGAAACTTGGTTTCTCTAAACTTGAAATATAAATGTTTTGAGCTCACACA</canonical_amplicon>
		<polymorphic_amplicon>ACGCCTTTAGATAGTCTCTTCATACCTAATCCTAAAATTTGAAATACATTTCGTTGTTTTGAAAAATTTTCAGCTGATATTCTAGTTTTTACATCAAAAATGACAGTATTCCTCTCTGAGCGAGCTGAGTTTTGCAAAATGTCTTTCAGTTTCTTTTTTTCTGCTTATTTTCGGATTTCAAGTTAAAAAATTTKTAAGTTGAAACTTGGTTTCTCTAAACTTGAAATATAAATGTTTTGAGCTCACACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13119</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>504259</contig_pos>
        <strand>+</strand>
        <context>ATACCTTGGT[C/T]ATATCCTGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTAACACACTTTTTCGAATGAATAGCTGGAAAAAACACCATACCTTGGT</left_flank>
        <right_flank>ATATCCTGCAGAAGGTCATAATAAATTCTACTCTCTGGAATATGTGGCAT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCCCCTCTCATCCTGAGATTTTCGGTTATCTGATCCGACTCACGAACCTGTTTAGCATATCCCTCCTCTGTATCCAGTTCTGGCCAGTCGGTCTTGTTCATGTGGTGAAGCATGGCGTCGGCCAAAAGCTCGCCGCATGGCTTGGCAATCTGTAAACATGCAAGATGACTATCGTTTTGTCTGGTGGTTGAGAGGAACATTAATACACTAATGATCAATTCCACAAACCTTTGTTCCAGTAATATCCTCCAAAACTGTTTCAGCGGGACCACCACTGTCACAAACGATAACCGGCCTCCGTTGGTCAAGAGCTTCGATTGGGACGATTCCGAAATGCTCGTTTGGCGGTGTGTATAGAGCTGTATCGCACTGTTGATAGAGTTGGAATTTAACCTTATCCGTTGGCGACGGAATGAAAGTGACCATATCAGTGACATCGAGCTCCTAGATTAACACACTTTTTCGAATGAATAGCTGGAAAAAACACCATACCTTGGTTATATCCTGCAGAAGGTCATAATAAATTCTACTCTCTGGAATATGTGGCATCACTGATCCGGCCAACTGAACGTGCAGATTTGTGTATCCTCGTCTTTTGAGGATTGCTGCAGCTTCCACAATGATATCTAGCCGTTTCTCTGGCCAGAATCTGTTCATTGAGAGGAAGGTGTAGACGTTGTTCTTGGCACGTTCAGCTCTGCTCACTGGTTTTTCGGACTGCAAAACACTTGAACGTAGATACAAAGAACGAATATTAAGGGCCTTACCGCGGTGACAATAAAGTCAATATCACATGGTGGGTAGACAACTCGGACCTTGCTTTTTTCGATATTAGGCATCACTTTGCAGAATTGTGTGGCTGAAAATAAAAGTTATAGAACTGAATTTTGAATCAATCTAGTACCTGTAAAGTTGCTGTTCACGAAAATCTGATCAATTTGTCCGAAGAGCTCTTCCTCGACGATTCCGATCAACTTAGCGTACCATCTGTACAAGAAG</canonical>
            <polymorphic>CCCCCCTCTCATCCTGAGATTTTCGGTTATCTGATCCGACTCACGAACCTGTTTAGCATATCCCTCCTCTGTATCCAGTTCTGGCCAGTCGGTCTTGTTCATGTGGTGAAGCATGGCGTCGGCCAAAAGCTCGCCGCATGGCTTGGCAATCTGTAAACATGCAAGATGACTATCGTTTTGTCTGGTGGTTGAGAGGAACATTAATACACTAATGATCAATTCCACAAACCTTTGTTCCAGTAATATCCTCCAAAACTGTTTCAGCGGGACCACCACTGTCACAAACGATAACCGGCCTCCGTTGGTCAAGAGCTTCGATTGGGACGATTCCGAAATGCTCGTTTGGCGGTGTGTATAGAGCTGTATCGCACTGTTGATAGAGTTGGAATTTAACCTTATCCGTTGGCGACGGAATGAAAGTGACCATATCAGTGACATCGAGCTCCTAGATTAACACACTTTTTCGAATGAATAGCTGGAAAAAACACCATACCTTGGTYATATCCTGCAGAAGGTCATAATAAATTCTACTCTCTGGAATATGTGGCATCACTGATCCGGCCAACTGAACGTGCAGATTTGTGTATCCTCGTCTTTTGAGGATTGCTGCAGCTTCCACAATGATATCTAGCCGTTTCTCTGGCCAGAATCTGTTCATTGAGAGGAAGGTGTAGACGTTGTTCTTGGCACGTTCAGCTCTGCTCACTGGTTTTTCGGACTGCAAAACACTTGAACGTAGATACAAAGAACGAATATTAAGGGCCTTACCGCGGTGACAATAAAGTCAATATCACATGGTGGGTAGACAACTCGGACCTTGCTTTTTTCGATATTAGGCATCACTTTGCAGAATTGTGTGGCTGAAAATAAAAGTTATAGAACTGAATTTTGAATCAATCTAGTACCTGTAAAGTTGCTGTTCACGAAAATCTGATCAATTTGTCCGAAGAGCTCTTCCTCGACGATTCCGATCAACTTAGCGTACCATCTGTACAAGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATAGAGCTGTATCGCACTGTT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGACGAGGATACACAAATCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTATAGAGCTGTATCGCACTGTTGATAGAGTTGGAATTTAACCTTATCCGTTGGCGACGGAATGAAAGTGACCATATCAGTGACATCGAGCTCCTAGATTAACACACTTTTTCGAATGAATAGCTGGAAAAAACACCATACCTTGGTTATATCCTGCAGAAGGTCATAATAAATTCTACTCTCTGGAATATGTGGCATCACTGATCCGGCCAACTGAACGTGCAGATTTGTGTATCCTCGTCTTTT</canonical_amplicon>
		<polymorphic_amplicon>GTATAGAGCTGTATCGCACTGTTGATAGAGTTGGAATTTAACCTTATCCGTTGGCGACGGAATGAAAGTGACCATATCAGTGACATCGAGCTCCTAGATTAACACACTTTTTCGAATGAATAGCTGGAAAAAACACCATACCTTGGTYATATCCTGCAGAAGGTCATAATAAATTCTACTCTCTGGAATATGTGGCATCACTGATCCGGCCAACTGAACGTGCAGATTTGTGTATCCTCGTCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13120</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>505889</contig_pos>
        <strand>+</strand>
        <context>TGAAGGGATA[A/G]GTGACACTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAAGAGACAAAATCGAGTAGCGCTTTAGCTCGGTGAACATGAAGGGATA</left_flank>
        <right_flank>GTGACACTGTGTTCCCAAGGAAAGAGTGAGAGAGAGAGAGCGATGGAAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTAGCGGGCCGACAAAAAGCCACTATAAAAGGAAAAGGAGGAAATGGGAACAATTTTGAGATGGCGAAAGGAGATGATGCAGGATGAGGAAGAGGTGAAAGTCACGGAAAGTCACGGATAGAAAATAAGGATATATTGATTGACACTCGAGGTGTGAGGTGTCAAAAACTATTGCAAAAAATAATTGAAGAAAATGAGCTTACCTTTTTGATGGCAATGTTGTTATTCAATGTGGAGCTGGACATCTGGGCACGATTCGTGGATTGAGTTAAGCTTCTTCTTGTTTTCGACTCCTCCGAGCTGAGAAAAAAAATTTCAAAATACCAAAAGAGCTCTAATCAAGATTCTTACCTGCTTCTCGCCAGCGACAGAGGTTTCGGTACAGAGCTCACGACGAACGAACCAGATGAGAAGAGAAAGTGGGACGGAGAAGAAAAGAGCGCAGGTGTAAAGAGACAAAATCGAGTAGCGCTTTAGCTCGGTGAACATGAAGGGATAGGTGACACTGTGTTCCCAAGGAAAGAGTGAGAGAGAGAGAGCGATGGAAGCAGCCGGCAGATGAATCGAAGATAAAGCACACAGTCGGACTGCGCTCTAGATGCGACAATAGACCGTCTATTCGATATCGAACACTGTATGAAATGAAGGGGACGACGGGATGAGGCGCAATTCGAGTCCTTCTTTTCTCTCGGAAAATGAAACTCCGCCCCTGAATTGTCGGACAATACCGAAAATCTTGTTTTAAACAGAGTTTCACTCCGCCCTCAACGAAAGTCCCCACTGCTTTCTCTCCGTCTGCTTCATCCCCACTGCTTTCTCTCCGTCTCCCAAGCCTTCTTCTGGTCCGTGATGGTTGGGGAGCGTAGAAGAAAAAGGAGAAAAAGCGAACCTGATGGAGAATTTGAGGAGGCTACAGATTAAAAACACGATCGAATTTTGAGATTTGGTATACATCCATGTGTGTGTGCGACATGACATTGTCTTGAAAGAAGTGCAAAT</canonical>
            <polymorphic>AGTAGCGGGCCGACAAAAAGCCACTATAAAAGGAAAAGGAGGAAATGGGAACAATTTTGAGATGGCGAAAGGAGATGATGCAGGATGAGGAAGAGGTGAAAGTCACGGAAAGTCACGGATAGAAAATAAGGATATATTGATTGACACTCGAGGTGTGAGGTGTCAAAAACTATTGCAAAAAATAATTGAAGAAAATGAGCTTACCTTTTTGATGGCAATGTTGTTATTCAATGTGGAGCTGGACATCTGGGCACGATTCGTGGATTGAGTTAAGCTTCTTCTTGTTTTCGACTCCTCCGAGCTGAGAAAAAAAATTTCAAAATACCAAAAGAGCTCTAATCAAGATTCTTACCTGCTTCTCGCCAGCGACAGAGGTTTCGGTACAGAGCTCACGACGAACGAACCAGATGAGAAGAGAAAGTGGGACGGAGAAGAAAAGAGCGCAGGTGTAAAGAGACAAAATCGAGTAGCGCTTTAGCTCGGTGAACATGAAGGGATARGTGACACTGTGTTCCCAAGGAAAGAGTGAGAGAGAGAGAGCGATGGAAGCAGCCGGCAGATGAATCGAAGATAAAGCACACAGTCGGACTGCGCTCTAGATGCGACAATAGACCGTCTATTCGATATCGAACACTGTATGAAATGAAGGGGACGACGGGATGAGGCGCAATTCGAGTCCTTCTTTTCTCTCGGAAAATGAAACTCCGCCCCTGAATTGTCGGACAATACCGAAAATCTTGTTTTAAACAGAGTTTCACTCCGCCCTCAACGAAAGTCCCCACTGCTTTCTCTCCGTCTGCTTCATCCCCACTGCTTTCTCTCCGTCTCCCAAGCCTTCTTCTGGTCCGTGATGGTTGGGGAGCGTAGAAGAAAAAGGAGAAAAAGCGAACCTGATGGAGAATTTGAGGAGGCTACAGATTAAAAACACGATCGAATTTTGAGATTTGGTATACATCCATGTGTGTGTGCGACATGACATTGTCTTGAAAGAAGTGCAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTCTAATCAAGATTCTTACCTG</pcr_primer_p1>
		<pcr_primer_p2>GTGCTTTATCTTCGATTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGCTCTAATCAAGATTCTTACCTGCTTCTCGCCAGCGACAGAGGTTTCGGTACAGAGCTCACGACGAACGAACCAGATGAGAAGAGAAAGTGGGACGGAGAAGAAAAGAGCGCAGGTGTAAAGAGACAAAATCGAGTAGCGCTTTAGCTCGGTGAACATGAAGGGATAGGTGACACTGTGTTCCCAAGGAAAGAGTGAGAGAGAGAGAGCGATGGAAGCAGCCGGCAGATGAATCGAAGATAAAGCAC</canonical_amplicon>
		<polymorphic_amplicon>AGCTCTAATCAAGATTCTTACCTGCTTCTCGCCAGCGACAGAGGTTTCGGTACAGAGCTCACGACGAACGAACCAGATGAGAAGAGAAAGTGGGACGGAGAAGAAAAGAGCGCAGGTGTAAAGAGACAAAATCGAGTAGCGCTTTAGCTCGGTGAACATGAAGGGATARGTGACACTGTGTTCCCAAGGAAAGAGTGAGAGAGAGAGAGCGATGGAAGCAGCCGGCAGATGAATCGAAGATAAAGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13121</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>536855</contig_pos>
        <strand></strand>
        <context>AATACACTTG[C/T]TTTCACCAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGCATTTTAGAAATAAAAAAATGTATACTGTGAAATCATAATACACTTG</left_flank>
        <right_flank>TTTCACCAGGCTGCTGCAACAAAAAATGAAGTGGTTGTAAGAAAAGCGTG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGACAGTTTTCGTTTTGTGTATTCCATAATGAGGAATTCAAAATAAAGTGGTTTCAACGATTCGAAAAAGAGATTAAAGTGACGATCTCTACCACCAACAGCCAATTGCGTAAACGACAACGAACAGGTGAGAATGTTCAACTTCCCATTTAAGCATGATTGATGGGTCGACGAAACATCTGTACCCAATTCGGAAACGAGGAGAAAAATGGGTTGAATTAAAACCGAATTGACATCGCGATGCGTTTTGCCTAATTACTTGAACTTTTTTACCTCGTCATCATCATTAAAAGTTTTGTTGACAGTGTTGAAAAGCTGACATTCAAACTCAGTTTTTCTTTTTTAATCGTTCCCGCGGGAACGGAGAGGGAACAGAGACAATTATTAGGGACAATAATGTAGAAAAAGGGAGTTGAGACGCAAACATTCACTCAGTGAGAAACAAGCGATGCATTTTAGAAATAAAAAAATGTATACTGTGAAATCATAATACACTTGCTTTCACCAGGCTGCTGCAACAAAAAATGAAGTGGTTGTAAGAAAAGCGTGGACAGCAAAAAGTGAATTGGATGAGGAGGAGCTAATGTATTCTGAATGCTCCGGAGCAGTGCGATGCAAAAAGCGTGGAGCAATGTGTGTGGGTGCGGAATGAAAACAAAATTGTGGCACTGGATTGCTATTTTTTCCAAATAAAAAAATTTCAATTTAAAAAAAGCAAAAGTTTTCGAAAGGCAAAAGAGGGAGAGAGAAAGAGAGAAGCGAACAGTTTGAGAATGTTAGAGGTGGTATGTGTGGGACGTTATCAGTGCTGCCGACAGGATTATGAAATGAGAATTGAAATTGAAAAGGCAGCCCCCGGTGAAAGGTGAAAGGAGAGAAACAGTATGTCGAAATTAGTTCCGACTTTTTTACGTGGGAGTTTTTTTTTACCTATTCGAGAAATTTCTAGCTTGACCGGGTGTACTGTATTTTGTGATGGTAATACAAGTATACTTACAA</canonical>
            <polymorphic>GAGACAGTTTTCGTTTTGTGTATTCCATAATGAGGAATTCAAAATAAAGTGGTTTCAACGATTCGAAAAAGAGATTAAAGTGACGATCTCTACCACCAACAGCCAATTGCGTAAACGACAACGAACAGGTGAGAATGTTCAACTTCCCATTTAAGCATGATTGATGGGTCGACGAAACATCTGTACCCAATTCGGAAACGAGGAGAAAAATGGGTTGAATTAAAACCGAATTGACATCGCGATGCGTTTTGCCTAATTACTTGAACTTTTTTACCTCGTCATCATCATTAAAAGTTTTGTTGACAGTGTTGAAAAGCTGACATTCAAACTCAGTTTTTCTTTTTTAATCGTTCCCGCGGGAACGGAGAGGGAACAGAGACAATTATTAGGGACAATAATGTAGAAAAAGGGAGTTGAGACGCAAACATTCACTCAGTGAGAAACAAGCGATGCATTTTAGAAATAAAAAAATGTATACTGTGAAATCATAATACACTTGYTTTCACCAGGCTGCTGCAACAAAAAATGAAGTGGTTGTAAGAAAAGCGTGGACAGCAAAAAGTGAATTGGATGAGGAGGAGCTAATGTATTCTGAATGCTCCGGAGCAGTGCGATGCAAAAAGCGTGGAGCAATGTGTGTGGGTGCGGAATGAAAACAAAATTGTGGCACTGGATTGCTATTTTTTCCAAATAAAAAAATTTCAATTTAAAAAAAGCAAAAGTTTTCGAAAGGCAAAAGAGGGAGAGAGAAAGAGAGAAGCGAACAGTTTGAGAATGTTAGAGGTGGTATGTGTGGGACGTTATCAGTGCTGCCGACAGGATTATGAAATGAGAATTGAAATTGAAAAGGCAGCCCCCGGTGAAAGGTGAAAGGAGAGAAACAGTATGTCGAAATTAGTTCCGACTTTTTTACGTGGGAGTTTTTTTTTACCTATTCGAGAAATTTCTAGCTTGACCGGGTGTACTGTATTTTGTGATGGTAATACAAGTATACTTACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGGAACAGAGACAATTATTAGG</pcr_primer_p1>
		<pcr_primer_p2>CATTCAGAATACATTAGCTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>AGGGAACAGAGACAATTATTAGGGACAATAATGTAGAAAAAGGGAGTTGAGACGCAAACATTCACTCAGTGAGAAACAAGCGATGCATTTTAGAAATAAAAAAATGTATACTGTGAAATCATAATACACTTGCTTTCACCAGGCTGCTGCAACAAAAAATGAAGTGGTTGTAAGAAAAGCGTGGACAGCAAAAAGTGAATTGGATGAGGAGGAGCTAATGTATTCTGAATG</canonical_amplicon>
		<polymorphic_amplicon>AGGGAACAGAGACAATTATTAGGGACAATAATGTAGAAAAAGGGAGTTGAGACGCAAACATTCACTCAGTGAGAAACAAGCGATGCATTTTAGAAATAAAAAAATGTATACTGTGAAATCATAATACACTTGYTTTCACCAGGCTGCTGCAACAAAAAATGAAGTGGTTGTAAGAAAAGCGTGGACAGCAAAAAGTGAATTGGATGAGGAGGAGCTAATGTATTCTGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13122</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>539899</contig_pos>
        <strand>+</strand>
        <context>TAAGGTACTT[A/T]GAGGAGGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTGTTCCAAGATAAGAAAAACGGGTCTCATCGTACATAATAAGGTACTT</left_flank>
        <right_flank>GAGGAGGAAAGGGAACATATCACCCCCTCATTCTGTGTAAATATGAACAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACAGATTTCTTGTAAGCTAGCGTATTTTTCAGTTTACTCCCAACCATTCCGATCATTTTCAGGAGTCTGGGGCTCGGCTATCAAGTTTACGATCACTTTAAAAAAATATCTAAATACAACATTCTCAGTTCATGTTTAGGATATGTATAGTCGTTTCCTCCTAATCGAAAAATAAAAAAAAAGAGCTTCATAGTGGTCATTTCAAGAAAAAACGACCGAGTCACCGGACGTCGCGAAACGAGGTAGGATTAGTTTGACGATTAGTAGTTTTTGATCCAAAAGAAGTATACGTTTATTCTTTTACTCATGTTTTCAGTGGGTAATCAAAACTCATACGAAATCATAGGTAAACACAAATGGACACTCAAACAAAAGCAAACTCATTTTGGAATAATAGGTGGGCAATAAAAAGACAATGTATTTACAGACGAGTCCATGTCCAACAATCTTGTTCCAAGATAAGAAAAACGGGTCTCATCGTACATAATAAGGTACTTTGAGGAGGAAAGGGAACATATCACCCCCTCATTCTGTGTAAATATGAACAATGAGGGATGGTTGGGAGGAGATGGTAGTGGTCTGCAGCATTGAGCAAATTGATTTACAATCTGCTTACAATAGAACAAGAGAGGGGGACGTGTGTTGGCACGCGCGGTGGAAATCGGCCCATAGGTAGAGGGAAAGAGGTGTCACCAACAATCTGACTGGTGGCACAAAAACAAAAGAATGTCGGAAACAGGGAAGAAGACAAACGGAAGATGTTGAAGGGATGGAAGGTTAGGAAGAAGTAAAAGAATAAGAAGAAAAAAAAGAAAAAGGAAAAACGGGTTGAGAAGGAATGAATTAACTATTCCTGTCTCTTTTATTTTGAAAAATTGAGTTGGGTTTCTCTGCGACATTCTTGTTCATTCATCACTCCCACAGATGCTTAAGCTCGACAAGAAAACCGGGAATTGAGGAGGAAGCAATGAGATCAGTTACGCGATTAGTGTTGAGAT</canonical>
            <polymorphic>CAACAGATTTCTTGTAAGCTAGCGTATTTTTCAGTTTACTCCCAACCATTCCGATCATTTTCAGGAGTCTGGGGCTCGGCTATCAAGTTTACGATCACTTTAAAAAAATATCTAAATACAACATTCTCAGTTCATGTTTAGGATATGTATAGTCGTTTCCTCCTAATCGAAAAATAAAAAAAAAGAGCTTCATAGTGGTCATTTCAAGAAAAAACGACCGAGTCACCGGACGTCGCGAAACGAGGTAGGATTAGTTTGACGATTAGTAGTTTTTGATCCAAAAGAAGTATACGTTTATTCTTTTACTCATGTTTTCAGTGGGTAATCAAAACTCATACGAAATCATAGGTAAACACAAATGGACACTCAAACAAAAGCAAACTCATTTTGGAATAATAGGTGGGCAATAAAAAGACAATGTATTTACAGACGAGTCCATGTCCAACAATCTTGTTCCAAGATAAGAAAAACGGGTCTCATCGTACATAATAAGGTACTTWGAGGAGGAAAGGGAACATATCACCCCCTCATTCTGTGTAAATATGAACAATGAGGGATGGTTGGGAGGAGATGGTAGTGGTCTGCAGCATTGAGCAAATTGATTTACAATCTGCTTACAATAGAACAAGAGAGGGGGACGTGTGTTGGCACGCGCGGTGGAAATCGGCCCATAGGTAGAGGGAAAGAGGTGTCACCAACAATCTGACTGGTGGCACAAAAACAAAAGAATGTCGGAAACAGGGAAGAAGACAAACGGAAGATGTTGAAGGGATGGAAGGTTAGGAAGAAGTAAAAGAATAAGAAGAAAAAAAAGAAAAAGGAAAAACGGGTTGAGAAGGAATGAATTAACTATTCCTGTCTCTTTTATTTTGAAAAATTGAGTTGGGTTTCTCTGCGACATTCTTGTTCATTCATCACTCCCACAGATGCTTAAGCTCGACAAGAAAACCGGGAATTGAGGAGGAAGCAATGAGATCAGTTACGCGATTAGTGTTGAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAACTCATTTTGGAATAATAGG</pcr_primer_p1>
		<pcr_primer_p2>TGTTCTATTGTAAGCAGATTGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAACTCATTTTGGAATAATAGGTGGGCAATAAAAAGACAATGTATTTACAGACGAGTCCATGTCCAACAATCTTGTTCCAAGATAAGAAAAACGGGTCTCATCGTACATAATAAGGTACTTTGAGGAGGAAAGGGAACATATCACCCCCTCATTCTGTGTAAATATGAACAATGAGGGATGGTTGGGAGGAGATGGTAGTGGTCTGCAGCATTGAGCAAATTGATTTACAATCTGCTTACAATAGAACA</canonical_amplicon>
		<polymorphic_amplicon>CAAACTCATTTTGGAATAATAGGTGGGCAATAAAAAGACAATGTATTTACAGACGAGTCCATGTCCAACAATCTTGTTCCAAGATAAGAAAAACGGGTCTCATCGTACATAATAAGGTACTTWGAGGAGGAAAGGGAACATATCACCCCCTCATTCTGTGTAAATATGAACAATGAGGGATGGTTGGGAGGAGATGGTAGTGGTCTGCAGCATTGAGCAAATTGATTTACAATCTGCTTACAATAGAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13125</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>573949</contig_pos>
        <strand>+</strand>
        <context>AGAATGATCA[C/T]TCCGACACCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTCGAATAAGTGCTGAGTCCCCAGTTTCCGCAGCTTTGAGAATGATCA</left_flank>
        <right_flank>TCCGACACCATCTGATCGACAAAATCCGGTGCCATCAACTGCGAACGATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAGCAAAAATTTAAATAAAAAATATGCGTTTAGATTACCTTATATGTTCATTTGGTAGGTAATTATGAACAATGGCGGGAACCAGTCCATGTTTGCTTAATGATGCGACTTTCATGAGCTGAATCAGTCCGGATGCCACTTCACAATGCCCGAATTGAGCCTGAAATTCATTAAGAGGTGTTGATCTTATCACTTACTGTGCAAAATTACTTTAACTGAAGACATGATCAATTCTTTTCCCATCGTTTTATAGGCCATTGACTCGGCACTGTCACCAGCGGAAGTTGCTGTTCCATGTCCTCAAATTTGAAATTTTTGATGATTTTTTTTTCCAATTTTCCCACTACCTTCAACATATGAAACATCACCAACATCCGCCAACAGCTGAGAAATCGAGCTAACCACCGGAGTGATAACAGCACCGCAGTGATGACTTTTAGCGTAGGAAATTCGAATAAGTGCTGAGTCCCCAGTTTCCGCAGCTTTGAGAATGATCATTCCGACACCATCTGATCGACAAAATCCGGTGCCATCAACTGCGAACGATTTTGTGTTATGGTGGTCCAGCAAAGTTCTTAAAGAATACAACCATTTGGATGATTGGATCAGTTGGCTTGTAGCGACCACGGCATGTTTTTTTCCTGAAAATAAATTGTGTGTTTTTTTTTAAATTTAAAACTGCAGTTTACCTTCTCTTATTGAATTAACTGCCATTTCGAGGGCAGTGGCTATAGATGAACACGTCGTGTCGACAATTACCGCACGACCCCGAATGCCCAATAATGCTGCTAATCGTCCAGCTGCCATACTGTGTACAGTTCCCATCCATAGTCTTTCGTCTAGGTCATCAACAAGCTTTTCAGCGAGAGCACGGTACTCAGAGTGAGCGCTAATAGCTAGGAATAGATCTGCATCAGGAATCGCAGAGAGACCAGATTTTTCTAATGCATTGTAAGCTGAATGTAGAAGCAGACGGTGTTGAGGATCAACGAATTCAG</canonical>
            <polymorphic>TGAAGCAAAAATTTAAATAAAAAATATGCGTTTAGATTACCTTATATGTTCATTTGGTAGGTAATTATGAACAATGGCGGGAACCAGTCCATGTTTGCTTAATGATGCGACTTTCATGAGCTGAATCAGTCCGGATGCCACTTCACAATGCCCGAATTGAGCCTGAAATTCATTAAGAGGTGTTGATCTTATCACTTACTGTGCAAAATTACTTTAACTGAAGACATGATCAATTCTTTTCCCATCGTTTTATAGGCCATTGACTCGGCACTGTCACCAGCGGAAGTTGCTGTTCCATGTCCTCAAATTTGAAATTTTTGATGATTTTTTTTTCCAATTTTCCCACTACCTTCAACATATGAAACATCACCAACATCCGCCAACAGCTGAGAAATCGAGCTAACCACCGGAGTGATAACAGCACCGCAGTGATGACTTTTAGCGTAGGAAATTCGAATAAGTGCTGAGTCCCCAGTTTCCGCAGCTTTGAGAATGATCAYTCCGACACCATCTGATCGACAAAATCCGGTGCCATCAACTGCGAACGATTTTGTGTTATGGTGGTCCAGCAAAGTTCTTAAAGAATACAACCATTTGGATGATTGGATCAGTTGGCTTGTAGCGACCACGGCATGTTTTTTTCCTGAAAATAAATTGTGTGTTTTTTTTTAAATTTAAAACTGCAGTTTACCTTCTCTTATTGAATTAACTGCCATTTCGAGGGCAGTGGCTATAGATGAACACGTCGTGTCGACAATTACCGCACGACCCCGAATGCCCAATAATGCTGCTAATCGTCCAGCTGCCATACTGTGTACAGTTCCCATCCATAGTCTTTCGTCTAGGTCATCAACAAGCTTTTCAGCGAGAGCACGGTACTCAGAGTGAGCGCTAATAGCTAGGAATAGATCTGCATCAGGAATCGCAGAGAGACCAGATTTTTCTAATGCATTGTAAGCTGAATGTAGAAGCAGACGGTGTTGAGGATCAACGAATTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACATATGAAACATCACCAACAT</pcr_primer_p1>
		<pcr_primer_p2>ATCATCCAAATGGTTGTATTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACATATGAAACATCACCAACATCCGCCAACAGCTGAGAAATCGAGCTAACCACCGGAGTGATAACAGCACCGCAGTGATGACTTTTAGCGTAGGAAATTCGAATAAGTGCTGAGTCCCCAGTTTCCGCAGCTTTGAGAATGATCATTCCGACACCATCTGATCGACAAAATCCGGTGCCATCAACTGCGAACGATTTTGTGTTATGGTGGTCCAGCAAAGTTCTTAAAGAATACAACCATTTGGATGAT</canonical_amplicon>
		<polymorphic_amplicon>AACATATGAAACATCACCAACATCCGCCAACAGCTGAGAAATCGAGCTAACCACCGGAGTGATAACAGCACCGCAGTGATGACTTTTAGCGTAGGAAATTCGAATAAGTGCTGAGTCCCCAGTTTCCGCAGCTTTGAGAATGATCAYTCCGACACCATCTGATCGACAAAATCCGGTGCCATCAACTGCGAACGATTTTGTGTTATGGTGGTCCAGCAAAGTTCTTAAAGAATACAACCATTTGGATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13126</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>645670</contig_pos>
        <strand>+</strand>
        <context>AATCATTGGG[A/G]AAAATACATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTACTGATGATGATGAGGTTTTGAAAGGTATAAATAATTAAATCATTGGG</left_flank>
        <right_flank>AAAATACATCGTTTTTTTATTAGTCAAACGACGGCAGAGCAAGTTTAACG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGCTAGCTTAGCTGGCTCATATTCTTTCGGTTTGTTACGTTCCTTTGGCGGTGGAGGTGGAGCTCGACGGATTTCTTCATCTTTCTGAATTTTCTATAGCTACAAAAGACATTGGAACTTTATTATCTACCTGAAAAGAGTCTGATAGAAACTTGTAGAAACCATCGTCATCTGAACTTTTCGTATCGGCTAGAACAGTGTTAATCAGCAAAAAACATAAAAATAGCGACCTGGGTTCCATTTCAAACAATGATGATTGCAAGTTTTCTTCTTCTTCTCGATGAAAAGAAATCCTTATCACTTTTCACTTTTTGAGGATCAGATAAAAACAGGATTGACAGGATCTGTTTGGGGTTTGATGTTTTCGATATATCTTGTAACAATTTGATTTTCAGTTTTTTATTTGGTTGAAAGAGGAGGGGCACAGTCATTTCTTTGATTTACAAGCTACTGATGATGATGAGGTTTTGAAAGGTATAAATAATTAAATCATTGGGAAAAATACATCGTTTTTTTATTAGTCAAACGACGGCAGAGCAAGTTTAACGTCGATTCCGAGCAAGAAGCAAGCCACAGTACTTTGAGCCATTCTTCTTTGGAGAATAGCTTTTCCGAATGCTGAGAGATAGGATTCTTTTGAAGATCTTGGTTCCATATCCATCAAGTATACAGTAATGAACATAGAAATCTGAAAATAATTCTGGTGAAATCAACTATATCTTCCAAACTAACAGGTCTCTTCTCAAGAATATTGTTTTGAATCTCTGGTGGAATGTAATCCTTGAAGTCGTCCATTTCTGGTGTGCACATCTCGGTTTCAATGTCGTAAAGGCCTGGTTGCATATCACCACATCTGAAACCGAACTTGTTTTTTTTTTGGCCACACCTTGTCTCTTAACGTTTCTATCTTTGTACGAGACAAAATAACAATCCCCCAAACAAGATTTAAAAAAAACGAATACAAGTACATCCGAACCCGTTTTGCAGTAGCAATTAGC</canonical>
            <polymorphic>TCTGCTAGCTTAGCTGGCTCATATTCTTTCGGTTTGTTACGTTCCTTTGGCGGTGGAGGTGGAGCTCGACGGATTTCTTCATCTTTCTGAATTTTCTATAGCTACAAAAGACATTGGAACTTTATTATCTACCTGAAAAGAGTCTGATAGAAACTTGTAGAAACCATCGTCATCTGAACTTTTCGTATCGGCTAGAACAGTGTTAATCAGCAAAAAACATAAAAATAGCGACCTGGGTTCCATTTCAAACAATGATGATTGCAAGTTTTCTTCTTCTTCTCGATGAAAAGAAATCCTTATCACTTTTCACTTTTTGAGGATCAGATAAAAACAGGATTGACAGGATCTGTTTGGGGTTTGATGTTTTCGATATATCTTGTAACAATTTGATTTTCAGTTTTTTATTTGGTTGAAAGAGGAGGGGCACAGTCATTTCTTTGATTTACAAGCTACTGATGATGATGAGGTTTTGAAAGGTATAAATAATTAAATCATTGGGRAAAATACATCGTTTTTTTATTAGTCAAACGACGGCAGAGCAAGTTTAACGTCGATTCCGAGCAAGAAGCAAGCCACAGTACTTTGAGCCATTCTTCTTTGGAGAATAGCTTTTCCGAATGCTGAGAGATAGGATTCTTTTGAAGATCTTGGTTCCATATCCATCAAGTATACAGTAATGAACATAGAAATCTGAAAATAATTCTGGTGAAATCAACTATATCTTCCAAACTAACAGGTCTCTTCTCAAGAATATTGTTTTGAATCTCTGGTGGAATGTAATCCTTGAAGTCGTCCATTTCTGGTGTGCACATCTCGGTTTCAATGTCGTAAAGGCCTGGTTGCATATCACCACATCTGAAACCGAACTTGTTTTTTTTTTGGCCACACCTTGTCTCTTAACGTTTCTATCTTTGTACGAGACAAAATAACAATCCCCCAAACAAGATTTAAAAAAAACGAATACAAGTACATCCGAACCCGTTTTGCAGTAGCAATTAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAGTCATTTCTTTGATTTACA</pcr_primer_p1>
		<pcr_primer_p2>GTATACTTGATGGATATGGAACC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CACAGTCATTTCTTTGATTTACAAGCTACTGATGATGATGAGGTTTTGAAAGGTATAAATAATTAAATCATTGGGAAAAATACATCGTTTTTTTATTAGTCAAACGACGGCAGAGCAAGTTTAACGTCGATTCCGAGCAAGAAGCAAGCCACAGTACTTTGAGCCATTCTTCTTTGGAGAATAGCTTTTCCGAATGCTGAGAGATAGGATTCTTTTGAAGATCTTGGTTCCATATCCATCAAGTATAC</canonical_amplicon>
		<polymorphic_amplicon>CACAGTCATTTCTTTGATTTACAAGCTACTGATGATGATGAGGTTTTGAAAGGTATAAATAATTAAATCATTGGGRAAAATACATCGTTTTTTTATTAGTCAAACGACGGCAGAGCAAGTTTAACGTCGATTCCGAGCAAGAAGCAAGCCACAGTACTTTGAGCCATTCTTCTTTGGAGAATAGCTTTTCCGAATGCTGAGAGATAGGATTCTTTTGAAGATCTTGGTTCCATATCCATCAAGTATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13127</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>646053</contig_pos>
        <strand></strand>
        <context>TTTTTTTTGG[C/T]CACACCTTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCCTGGTTGCATATCACCACATCTGAAACCGAACTTGTTTTTTTTTTGG</left_flank>
        <right_flank>CACACCTTGTCTCTTAACGTTTCTATCTTTGTACGAGACAAAATAACAAT</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTGATTTTCAGTTTTTTATTTGGTTGAAAGAGGAGGGGCACAGTCATTTCTTTGATTTACAAGCTACTGATGATGATGAGGTTTTGAAAGGTATAAATAATTAAATCATTGGGAAAAATACATCGTTTTTTTATTAGTCAAACGACGGCAGAGCAAGTTTAACGTCGATTCCGAGCAAGAAGCAAGCCACAGTACTTTGAGCCATTCTTCTTTGGAGAATAGCTTTTCCGAATGCTGAGAGATAGGATTCTTTTGAAGATCTTGGTTCCATATCCATCAAGTATACAGTAATGAACATAGAAATCTGAAAATAATTCTGGTGAAATCAACTATATCTTCCAAACTAACAGGTCTCTTCTCAAGAATATTGTTTTGAATCTCTGGTGGAATGTAATCCTTGAAGTCGTCCATTTCTGGTGTGCACATCTCGGTTTCAATGTCGTAAAGGCCTGGTTGCATATCACCACATCTGAAACCGAACTTGTTTTTTTTTTGGCCACACCTTGTCTCTTAACGTTTCTATCTTTGTACGAGACAAAATAACAATCCCCCAAACAAGATTTAAAAAAAACGAATACAAGTACATCCGAACCCGTTTTGCAGTAGCAATTAGCAAAATGGAAATAGCGCGGAACGTGTACTTTTTGACATAATTGACTGGCAGGAGGGCAAGTGAAAACACATCACAACACATACTTGCAATCCTCATCGATCAATTTGTGTTCGGGTCTGCTTAATTTGCTGGCTGTGATTTTGGATGATTGGGCTTTGAGTTGTTTGCAGAAGTCACAGAAGACGCTGAAGAAATTTGAGCAGGATAAAAATGATAGGAATATTTCGATTACCAAGATCCCTCTAATTTGGCACATGGACACTGGTTAACCTTCTCGTCAATTTTTTTCGAGCATGGAAGAGATGGATTGTTTGGGTCTGGAGTGCCACCGATTCTCATCTCAACTTCAGCGATCAGATTTTTGGTTGGCTTGGTGATCTCAAC</canonical>
            <polymorphic>AATTTGATTTTCAGTTTTTTATTTGGTTGAAAGAGGAGGGGCACAGTCATTTCTTTGATTTACAAGCTACTGATGATGATGAGGTTTTGAAAGGTATAAATAATTAAATCATTGGGAAAAATACATCGTTTTTTTATTAGTCAAACGACGGCAGAGCAAGTTTAACGTCGATTCCGAGCAAGAAGCAAGCCACAGTACTTTGAGCCATTCTTCTTTGGAGAATAGCTTTTCCGAATGCTGAGAGATAGGATTCTTTTGAAGATCTTGGTTCCATATCCATCAAGTATACAGTAATGAACATAGAAATCTGAAAATAATTCTGGTGAAATCAACTATATCTTCCAAACTAACAGGTCTCTTCTCAAGAATATTGTTTTGAATCTCTGGTGGAATGTAATCCTTGAAGTCGTCCATTTCTGGTGTGCACATCTCGGTTTCAATGTCGTAAAGGCCTGGTTGCATATCACCACATCTGAAACCGAACTTGTTTTTTTTTTGGYCACACCTTGTCTCTTAACGTTTCTATCTTTGTACGAGACAAAATAACAATCCCCCAAACAAGATTTAAAAAAAACGAATACAAGTACATCCGAACCCGTTTTGCAGTAGCAATTAGCAAAATGGAAATAGCGCGGAACGTGTACTTTTTGACATAATTGACTGGCAGGAGGGCAAGTGAAAACACATCACAACACATACTTGCAATCCTCATCGATCAATTTGTGTTCGGGTCTGCTTAATTTGCTGGCTGTGATTTTGGATGATTGGGCTTTGAGTTGTTTGCAGAAGTCACAGAAGACGCTGAAGAAATTTGAGCAGGATAAAAATGATAGGAATATTTCGATTACCAAGATCCCTCTAATTTGGCACATGGACACTGGTTAACCTTCTCGTCAATTTTTTTCGAGCATGGAAGAGATGGATTGTTTGGGTCTGGAGTGCCACCGATTCTCATCTCAACTTCAGCGATCAGATTTTTGGTTGGCTTGGTGATCTCAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGGCCA</site>
                <isoschizomers>
                    <enzyme>BalI</enzyme>
                    <enzyme>MlsI</enzyme>
                    <enzyme>MluNI</enzyme>
                    <enzyme>MscI</enzyme>
                    <enzyme>Msp20I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 451 48</canonical_bands>
                <polymorphic_bands>549 451</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>249 226 216 123 66 48 21 21 15 15</canonical_bands>
                <polymorphic_bands>297 226 216 123 66 21 21 15 15</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 451 48</canonical_bands>
                <polymorphic_bands>549 451</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAACTAACAGGTCTCTTCTCAA</pcr_primer_p1>
		<pcr_primer_p2>CGGATGTACTTGTATTCGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAACTAACAGGTCTCTTCTCAAGAATATTGTTTTGAATCTCTGGTGGAATGTAATCCTTGAAGTCGTCCATTTCTGGTGTGCACATCTCGGTTTCAATGTCGTAAAGGCCTGGTTGCATATCACCACATCTGAAACCGAACTTGTTTTTTTTTTGGCCACACCTTGTCTCTTAACGTTTCTATCTTTGTACGAGACAAAATAACAATCCCCCAAACAAGATTTAAAAAAAACGAATACAAGTACATCCG</canonical_amplicon>
		<polymorphic_amplicon>CAAACTAACAGGTCTCTTCTCAAGAATATTGTTTTGAATCTCTGGTGGAATGTAATCCTTGAAGTCGTCCATTTCTGGTGTGCACATCTCGGTTTCAATGTCGTAAAGGCCTGGTTGCATATCACCACATCTGAAACCGAACTTGTTTTTTTTTTGGYCACACCTTGTCTCTTAACGTTTCTATCTTTGTACGAGACAAAATAACAATCCCCCAAACAAGATTTAAAAAAAACGAATACAAGTACATCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13128</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>647737</contig_pos>
        <strand>+</strand>
        <context>TAGGGTTGCA[C/G]AGGATGTAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTATTATTCTGTGCAGGTCTTAATTCAAAAACACTGACTTAGGGTTGCA</left_flank>
        <right_flank>AGGATGTAAGAATTATGATCGGTCTTCTTTAAAACGTGGTATAAACAAGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCTCTCAGTTCGCCGTTTTCTCTTCCTTTCTATCCTTCCCAATACACACATACGCACATCACACCGTCTTCGGATCGTCTCCAGTGACGGCGCGACGACGACGACGACGGCTGACATCGTTCTGGTCCTGAGTGTACACAGCGATACACCTTCGGATGATACAACTATGGTTTTCATGCATTTAGCGATTGGAACTAATGGTGGAAGTGATATCCCGTAGTGAAAAGAAAAGATGATGACGATCTGAAATAAGTGTTCGGCAGGGTTACAACATCGGAATCATAGTAGAGACAAGACAGGATATTTGAAACAGTTTATGAATTTATTCTCCTGATGCTTGATGGAAAGCAAAAAGTGTTTCTCAACTCTCGGCGTTTTTTAAAATTATATCTGTCTCAAAAAAAATTCTGTAGGCGAAAAAAAAACCAGACGCGTGTTTTTTTCTGCTTTATTATTCTGTGCAGGTCTTAATTCAAAAACACTGACTTAGGGTTGCACAGGATGTAAGAATTATGATCGGTCTTCTTTAAAACGTGGTATAAACAAGCTTGAATTCAATTTCGCAGATATTATACACTTTTGCCTGGATTTAGAATTCTTTCGAGATTCGAAACTTACCTTAAATAATTTAATATAAACCTAACCTATACGTACACTCAGAGTGCAAATAACTATGTTCCTATGCGTGATATCAGAAATTTGTGAACTAATAAAATCTTCATCTTATTATCACAAACATTTTGATTGTTGTCAAGTTATTGATATTTCTAATAGGAACGGAGATAATTGAATTTGAAGTGTCCTTAAAGGGTCATGGACGCATCATGGACGTGATCCACATCAAAAGCGTCGGATAAGTCACTAGAGTTAGGTGGGTCGACGTAACAATGAAAATCCAAGTTTGATCTGAAACTGCAAATGATCTAAATCGGAACCACTACATTTTTCATCAACTCCATGCTTTGTTTGATCTTCCTATCTGATGCAAATAGTTTTGA</canonical>
            <polymorphic>CTTCTCTCAGTTCGCCGTTTTCTCTTCCTTTCTATCCTTCCCAATACACACATACGCACATCACACCGTCTTCGGATCGTCTCCAGTGACGGCGCGACGACGACGACGACGGCTGACATCGTTCTGGTCCTGAGTGTACACAGCGATACACCTTCGGATGATACAACTATGGTTTTCATGCATTTAGCGATTGGAACTAATGGTGGAAGTGATATCCCGTAGTGAAAAGAAAAGATGATGACGATCTGAAATAAGTGTTCGGCAGGGTTACAACATCGGAATCATAGTAGAGACAAGACAGGATATTTGAAACAGTTTATGAATTTATTCTCCTGATGCTTGATGGAAAGCAAAAAGTGTTTCTCAACTCTCGGCGTTTTTTAAAATTATATCTGTCTCAAAAAAAATTCTGTAGGCGAAAAAAAAACCAGACGCGTGTTTTTTTCTGCTTTATTATTCTGTGCAGGTCTTAATTCAAAAACACTGACTTAGGGTTGCASAGGATGTAAGAATTATGATCGGTCTTCTTTAAAACGTGGTATAAACAAGCTTGAATTCAATTTCGCAGATATTATACACTTTTGCCTGGATTTAGAATTCTTTCGAGATTCGAAACTTACCTTAAATAATTTAATATAAACCTAACCTATACGTACACTCAGAGTGCAAATAACTATGTTCCTATGCGTGATATCAGAAATTTGTGAACTAATAAAATCTTCATCTTATTATCACAAACATTTTGATTGTTGTCAAGTTATTGATATTTCTAATAGGAACGGAGATAATTGAATTTGAAGTGTCCTTAAAGGGTCATGGACGCATCATGGACGTGATCCACATCAAAAGCGTCGGATAAGTCACTAGAGTTAGGTGGGTCGACGTAACAATGAAAATCCAAGTTTGATCTGAAACTGCAAATGATCTAAATCGGAACCACTACATTTTTCATCAACTCCATGCTTTGTTTGATCTTCCTATCTGATGCAAATAGTTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>102 79 79 68 63 61 55 48 48 40 39 33 33 28 25 24 23 23 20 16 16 13 13 10 9 8 6 5 5 4 2 2</canonical_bands>
                <polymorphic_bands>102 79 79 68 63 61 55 55 48 48 40 33 33 28 25 24 23 23 20 16 13 13 10 9 8 6 5 5 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGCAAAAAGTGTTTCTCAAC</pcr_primer_p1>
		<pcr_primer_p2>TAAATCCAGGCAAAAGTGTATAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAGCAAAAAGTGTTTCTCAACTCTCGGCGTTTTTTAAAATTATATCTGTCTCAAAAAAAATTCTGTAGGCGAAAAAAAAACCAGACGCGTGTTTTTTTCTGCTTTATTATTCTGTGCAGGTCTTAATTCAAAAACACTGACTTAGGGTTGCACAGGATGTAAGAATTATGATCGGTCTTCTTTAAAACGTGGTATAAACAAGCTTGAATTCAATTTCGCAGATATTATACACTTTTGCCTGGATTTA</canonical_amplicon>
		<polymorphic_amplicon>AAAGCAAAAAGTGTTTCTCAACTCTCGGCGTTTTTTAAAATTATATCTGTCTCAAAAAAAATTCTGTAGGCGAAAAAAAAACCAGACGCGTGTTTTTTTCTGCTTTATTATTCTGTGCAGGTCTTAATTCAAAAACACTGACTTAGGGTTGCASAGGATGTAAGAATTATGATCGGTCTTCTTTAAAACGTGGTATAAACAAGCTTGAATTCAATTTCGCAGATATTATACACTTTTGCCTGGATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13134</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>39633</contig_pos>
        <strand></strand>
        <context>TCTCTGGAAA[G/A]GCATTAATGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAGTGTTATGCAAATGTAGGCACGCGGCTTCTTTTCGTAGTCTCTGGAAA</left_flank>
        <right_flank>GCATTAATGTATTGGAAAATTCTGGAAAAACTCTGAAACTTTGAAGTTAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGATTGCCAATGAATAATAGTTTTGTTGTTTGTCATGATCAGCCAATCGTTTCTGTATTCCAATATTTATATGGAGAATTATAAAATAGATCTGAAAGTATATTTCTTGGATTTTTGGCACTGTGGAGTTTTGAAATTTCTGAAGTTTAAAAATTTCTAAAATTTGGAATTTTTCGAAGTCAGAAAGTTGAAAATTTCAAAGCTTCATGTTTTAAAAAATCCATTTTCTCCAGATTCTTGAAGCTTCCGAATTTAACCGACGTTTTTGAACTGTCAACTTTTATACATAGTTTCCAACCACTGATTCCAAAAAAATAACCAAACTAGACTCACCAAAACTGCTCCAATAATAAAAAAGCCCGAAATAGCGACACCTGTCGTAAAGTTCATAATCTCGCAAGTGGCGAGACAGGATAATGAAAAACATGTCAGGTGGGTTAAAAATAAAAGTGTTATGCAAATGTAGGCACGCGGCTTCTTTTCGTAGTCTCTGGAAAGGCATTAATGTATTGGAAAATTCTGGAAAAACTCTGAAACTTTGAAGTTACGAAATTCCAGTAATTCGGAATTAAAACTTTCAGGGATTCAGAAGAGCATTAAAGATTTTTTAAAAGAAATCCCGAAATTCGAAATTCCAAAACTAAAACTTTAGGAACTTAGAACAGCTTCAACATAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATC</canonical>
            <polymorphic>TCTGATTGCCAATGAATAATAGTTTTGTTGTTTGTCATGATCAGCCAATCGTTTCTGTATTCCAATATTTATATGGAGAATTATAAAATAGATCTGAAAGTATATTTCTTGGATTTTTGGCACTGTGGAGTTTTGAAATTTCTGAAGTTTAAAAATTTCTAAAATTTGGAATTTTTCGAAGTCAGAAAGTTGAAAATTTCAAAGCTTCATGTTTTAAAAAATCCATTTTCTCCAGATTCTTGAAGCTTCCGAATTTAACCGACGTTTTTGAACTGTCAACTTTTATACATAGTTTCCAACCACTGATTCCAAAAAAATAACCAAACTAGACTCACCAAAACTGCTCCAATAATAAAAAAGCCCGAAATAGCGACACCTGTCGTAAAGTTCATAATCTCGCAAGTGGCGAGACAGGATAATGAAAAACATGTCAGGTGGGTTAAAAATAAAAGTGTTATGCAAATGTAGGCACGCGGCTTCTTTTCGTAGTCTCTGGAAARGCATTAATGTATTGGAAAATTCTGGAAAAACTCTGAAACTTTGAAGTTACGAAATTCCAGTAATTCGGAATTAAAACTTTCAGGGATTCAGAAGAGCATTAAAGATTTTTTAAAAGAAATCCCGAAATTCGAAATTCCAAAACTAAAACTTTAGGAACTTAGAACAGCTTCAACATAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCTGTCGTAAAGTTCATAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATCTTTAATGCTCTTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CACCTGTCGTAAAGTTCATAATCTCGCAAGTGGCGAGACAGGATAATGAAAAACATGTCAGGTGGGTTAAAAATAAAAGTGTTATGCAAATGTAGGCACGCGGCTTCTTTTCGTAGTCTCTGGAAAGGCATTAATGTATTGGAAAATTCTGGAAAAACTCTGAAACTTTGAAGTTACGAAATTCCAGTAATTCGGAATTAAAACTTTCAGGGATTCAGAAGAGCATTAAAGATTTTT</canonical_amplicon>
		<polymorphic_amplicon>CACCTGTCGTAAAGTTCATAATCTCGCAAGTGGCGAGACAGGATAATGAAAAACATGTCAGGTGGGTTAAAAATAAAAGTGTTATGCAAATGTAGGCACGCGGCTTCTTTTCGTAGTCTCTGGAAARGCATTAATGTATTGGAAAATTCTGGAAAAACTCTGAAACTTTGAAGTTACGAAATTCCAGTAATTCGGAATTAAAACTTTCAGGGATTCAGAAGAGCATTAAAGATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13135</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>44771</contig_pos>
        <strand></strand>
        <context>TTGATTATCA[C/G]CTTGGAAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAGTTAAACATTCGAAATTTTCTGAAAAAAAATGTGAAATTTGATTATCA</left_flank>
        <right_flank>CTTGGAAAAGGTGGACTAGAAAAAAGTTTGGACAGAGACTTTATTATAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTCTTCCTTTTCAACGCCGTTTTTCGGGAATTTCGGATTTTTTTTTTGAATTGTTTCGCAATAATATTCGAAAAATAGATAACTTTCAACACATTTTAATGCAATAAAAATTTTTGGTCGGAGTGCCTCTTTAAGATTTCTGGAATTTGAGAATGTCTGCATTCCTCACTTTCCCAGTTTTTTGGGGAATTTTTAACATTTGAAAGATGTGAAAAGTCTGAATATTCAAAAACCAAAGCTATGATAAAAAACAAGGAACCAAAGAGCTCATTAAATATGTTTCGAACATTTCAAGCGTAAAGAAAAGTCTGGTCTATCCATTTGAAACAGAAGATAAGCTGACTAACTCAAAAATCGCTGTCTTGTTGTTCTGACTTGAAAAGAAAATGTGAAATTCGTCATTATTTGATTCAAAAAAATTCGAACGAAACAACATAATAATAAGGAAGTTAAACATTCGAAATTTTCTGAAAAAAAATGTGAAATTTGATTATCACCTTGGAAAAGGTGGACTAGAAAAAAGTTTGGACAGAGACTTTATTATAAAACTGAGAAATTCGGAAACTCGAGTAAATTGAAAAAATATTCAAAAAGTCAGAAATTCAAAAATTCGATTTCAAAAATGTGCACATTCTGGAATTTCTGAATTTCGAAATTTCAAAAAAAAATAGAAATCCAGAAAATTCTAGAAATCTCCAAAGTTCAAGATCTTCCTTATATATATATAGAACGCTAGACGCGTCTGTTCCTGTCACTCTGTCCGGTTTTGGGTTTTTAATGTTAGTTTGACTGCCACCGAAACATAACTCGGGACCTGAAGCGCCGGAGGCGCGGCAACCAGATTGCTGGTAAAAGATATGAGATTTCAGACAACTGGTAACGAGATAATTAAGCTGAAAAGTGAAAAATTTCTTGGCAGGTTTTTGAACTGAAAACTTGAAAAAGCAGGTATCTTCCAGAAATTGAAAATAAAAGGAATGTTCGAAAAATTGTGTGA</canonical>
            <polymorphic>ATTTTCTTCCTTTTCAACGCCGTTTTTCGGGAATTTCGGATTTTTTTTTTGAATTGTTTCGCAATAATATTCGAAAAATAGATAACTTTCAACACATTTTAATGCAATAAAAATTTTTGGTCGGAGTGCCTCTTTAAGATTTCTGGAATTTGAGAATGTCTGCATTCCTCACTTTCCCAGTTTTTTGGGGAATTTTTAACATTTGAAAGATGTGAAAAGTCTGAATATTCAAAAACCAAAGCTATGATAAAAAACAAGGAACCAAAGAGCTCATTAAATATGTTTCGAACATTTCAAGCGTAAAGAAAAGTCTGGTCTATCCATTTGAAACAGAAGATAAGCTGACTAACTCAAAAATCGCTGTCTTGTTGTTCTGACTTGAAAAGAAAATGTGAAATTCGTCATTATTTGATTCAAAAAAATTCGAACGAAACAACATAATAATAAGGAAGTTAAACATTCGAAATTTTCTGAAAAAAAATGTGAAATTTGATTATCASCTTGGAAAAGGTGGACTAGAAAAAAGTTTGGACAGAGACTTTATTATAAAACTGAGAAATTCGGAAACTCGAGTAAATTGAAAAAATATTCAAAAAGTCAGAAATTCAAAAATTCGATTTCAAAAATGTGCACATTCTGGAATTTCTGAATTTCGAAATTTCAAAAAAAAATAGAAATCCAGAAAATTCTAGAAATCTCCAAAGTTCAAGATCTTCCTTATATATATATAGAACGCTAGACGCGTCTGTTCCTGTCACTCTGTCCGGTTTTGGGTTTTTAATGTTAGTTTGACTGCCACCGAAACATAACTCGGGACCTGAAGCGCCGGAGGCGCGGCAACCAGATTGCTGGTAAAAGATATGAGATTTCAGACAACTGGTAACGAGATAATTAAGCTGAAAAGTGAAAAATTTCTTGGCAGGTTTTTGAACTGAAAACTTGAAAAAGCAGGTATCTTCCAGAAATTGAAAATAAAAGGAATGTTCGAAAAATTGTGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>180 125 117 108 94 91 91 43 43 41 34 14 14 2 2 1</canonical_bands>
                <polymorphic_bands>180 125 117 108 94 91 91 43 43 41 34 28 2 2 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCATTTGAAACAGAAGATAAG</pcr_primer_p1>
		<pcr_primer_p2>GTTTCCGAATTTCTCAGTTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCCATTTGAAACAGAAGATAAGCTGACTAACTCAAAAATCGCTGTCTTGTTGTTCTGACTTGAAAAGAAAATGTGAAATTCGTCATTATTTGATTCAAAAAAATTCGAACGAAACAACATAATAATAAGGAAGTTAAACATTCGAAATTTTCTGAAAAAAAATGTGAAATTTGATTATCACCTTGGAAAAGGTGGACTAGAAAAAAGTTTGGACAGAGACTTTATTATAAAACTGAGAAATTCGGAAAC</canonical_amplicon>
		<polymorphic_amplicon>ATCCATTTGAAACAGAAGATAAGCTGACTAACTCAAAAATCGCTGTCTTGTTGTTCTGACTTGAAAAGAAAATGTGAAATTCGTCATTATTTGATTCAAAAAAATTCGAACGAAACAACATAATAATAAGGAAGTTAAACATTCGAAATTTTCTGAAAAAAAATGTGAAATTTGATTATCASCTTGGAAAAGGTGGACTAGAAAAAAGTTTGGACAGAGACTTTATTATAAAACTGAGAAATTCGGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13136</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>57565</contig_pos>
        <strand>+</strand>
        <context>GAAAAAGGAT[A/T]ACTGTAACTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAAGCCAAAGAGAACGTTCGAAGTTTTGCGGTAACTTCTGAAAAAGGAT</left_flank>
        <right_flank>ACTGTAACTATAACATTTTTTGCAGTTCTCAAAATATGCATTCTTCTTTA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATCAAAACATCAAAAATCGAAAATTGAAATTTTTTTGAAAAAATCAAAAAATTCAGAAAAGTTCAGTTTTAAAAGTTTTCAAAATTGACCGAGTTTTGAAAATCTGCTTATGGAGAATCTTGAAATCTCATAATTTCAGAATCTTAAACTTTCAGAATCAAAGGGTTTAAGATTTTTGGAATTCCAGAGTTTCGGAATATTAGAATATCAGAATTTGAGAATCTCAGACTCCTGCATTTCTGAATTTCGGAATTTCTGAAATTTTGAACTCCTGAAATTCTGAATTTCTGAGATTCTAACTTATTTTTGAATTTCTGAGTTTCTGAAAAACCAAAAAATCAAATTCGTCCAGGGATTATTCTACATTTGGTTCTGGAATATTCGGGTTTATCAAATTCTCGATAAATCCAAAATTCGACCATCAAAATACACATTACGGGCTAGATTTCAAGCCAAAGAGAACGTTCGAAGTTTTGCGGTAACTTCTGAAAAAGGATAACTGTAACTATAACATTTTTTGCAGTTCTCAAAATATGCATTCTTCTTTATCTCTTCGTGTTTGGTTTTCCGATATTCTTTGATTTTGCTTCAATCTTTTGATTTTTTACAAAAATATGAAATTATGCTAAATTATGTCATGGAATTTGGGGACGCTTCGTAAGTACAGTAATCCTTTTTTCGAAAATTAATCAATTTCTTCCAGACATCCCAATGTGATCGTACCAATAATCATGTTATCAGTACCCAGTTGGAAAAAAGAGTTTTTTGAAATTTTCAAATTTTTGCCGGGAATTCGAAAATTTGTATTGGGAAATTTGGAAATTGAAAACGGCGATTTGACGAAAAATTCGAAAAAACAAAATCAAAAAATCGAAACTGAAGAATATTTCAATCAATTTAAAATTGCTTGGGCTTGATTCTTATGCACTTTTCAACTTTTTTTTGAAATAAAATTTCAACTTTTTTCTATTTTCCTGATTTATGGGTTAACATGAATG</canonical>
            <polymorphic>AGATCAAAACATCAAAAATCGAAAATTGAAATTTTTTTGAAAAAATCAAAAAATTCAGAAAAGTTCAGTTTTAAAAGTTTTCAAAATTGACCGAGTTTTGAAAATCTGCTTATGGAGAATCTTGAAATCTCATAATTTCAGAATCTTAAACTTTCAGAATCAAAGGGTTTAAGATTTTTGGAATTCCAGAGTTTCGGAATATTAGAATATCAGAATTTGAGAATCTCAGACTCCTGCATTTCTGAATTTCGGAATTTCTGAAATTTTGAACTCCTGAAATTCTGAATTTCTGAGATTCTAACTTATTTTTGAATTTCTGAGTTTCTGAAAAACCAAAAAATCAAATTCGTCCAGGGATTATTCTACATTTGGTTCTGGAATATTCGGGTTTATCAAATTCTCGATAAATCCAAAATTCGACCATCAAAATACACATTACGGGCTAGATTTCAAGCCAAAGAGAACGTTCGAAGTTTTGCGGTAACTTCTGAAAAAGGATWACTGTAACTATAACATTTTTTGCAGTTCTCAAAATATGCATTCTTCTTTATCTCTTCGTGTTTGGTTTTCCGATATTCTTTGATTTTGCTTCAATCTTTTGATTTTTTACAAAAATATGAAATTATGCTAAATTATGTCATGGAATTTGGGGACGCTTCGTAAGTACAGTAATCCTTTTTTCGAAAATTAATCAATTTCTTCCAGACATCCCAATGTGATCGTACCAATAATCATGTTATCAGTACCCAGTTGGAAAAAAGAGTTTTTTGAAATTTTCAAATTTTTGCCGGGAATTCGAAAATTTGTATTGGGAAATTTGGAAATTGAAAACGGCGATTTGACGAAAAATTCGAAAAAACAAAATCAAAAAATCGAAACTGAAGAATATTTCAATCAATTTAAAATTGCTTGGGCTTGATTCTTATGCACTTTTCAACTTTTTTTTGAAATAAAATTTCAACTTTTTTCTATTTTCCTGATTTATGGGTTAACATGAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGATTATTCTACATTTGGTTCT</pcr_primer_p1>
		<pcr_primer_p2>ATCAAAAGATTGAAGCAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGGATTATTCTACATTTGGTTCTGGAATATTCGGGTTTATCAAATTCTCGATAAATCCAAAATTCGACCATCAAAATACACATTACGGGCTAGATTTCAAGCCAAAGAGAACGTTCGAAGTTTTGCGGTAACTTCTGAAAAAGGATAACTGTAACTATAACATTTTTTGCAGTTCTCAAAATATGCATTCTTCTTTATCTCTTCGTGTTTGGTTTTCCGATATTCTTTGATTTTGCTTCAATCTTTTGAT</canonical_amplicon>
		<polymorphic_amplicon>GGGATTATTCTACATTTGGTTCTGGAATATTCGGGTTTATCAAATTCTCGATAAATCCAAAATTCGACCATCAAAATACACATTACGGGCTAGATTTCAAGCCAAAGAGAACGTTCGAAGTTTTGCGGTAACTTCTGAAAAAGGATWACTGTAACTATAACATTTTTTGCAGTTCTCAAAATATGCATTCTTCTTTATCTCTTCGTGTTTGGTTTTCCGATATTCTTTGATTTTGCTTCAATCTTTTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13137</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>57579</contig_pos>
        <strand>+</strand>
        <context>GTAACTATAA[A/C]ATTTTTTGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACGTTCGAAGTTTTGCGGTAACTTCTGAAAAAGGATAACTGTAACTATAA</left_flank>
        <right_flank>ATTTTTTGCAGTTCTCAAAATATGCATTCTTCTTTATCTCTTCGTGTTTG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATCGAAAATTGAAATTTTTTTGAAAAAATCAAAAAATTCAGAAAAGTTCAGTTTTAAAAGTTTTCAAAATTGACCGAGTTTTGAAAATCTGCTTATGGAGAATCTTGAAATCTCATAATTTCAGAATCTTAAACTTTCAGAATCAAAGGGTTTAAGATTTTTGGAATTCCAGAGTTTCGGAATATTAGAATATCAGAATTTGAGAATCTCAGACTCCTGCATTTCTGAATTTCGGAATTTCTGAAATTTTGAACTCCTGAAATTCTGAATTTCTGAGATTCTAACTTATTTTTGAATTTCTGAGTTTCTGAAAAACCAAAAAATCAAATTCGTCCAGGGATTATTCTACATTTGGTTCTGGAATATTCGGGTTTATCAAATTCTCGATAAATCCAAAATTCGACCATCAAAATACACATTACGGGCTAGATTTCAAGCCAAAGAGAACGTTCGAAGTTTTGCGGTAACTTCTGAAAAAGGATAACTGTAACTATAACATTTTTTGCAGTTCTCAAAATATGCATTCTTCTTTATCTCTTCGTGTTTGGTTTTCCGATATTCTTTGATTTTGCTTCAATCTTTTGATTTTTTACAAAAATATGAAATTATGCTAAATTATGTCATGGAATTTGGGGACGCTTCGTAAGTACAGTAATCCTTTTTTCGAAAATTAATCAATTTCTTCCAGACATCCCAATGTGATCGTACCAATAATCATGTTATCAGTACCCAGTTGGAAAAAAGAGTTTTTTGAAATTTTCAAATTTTTGCCGGGAATTCGAAAATTTGTATTGGGAAATTTGGAAATTGAAAACGGCGATTTGACGAAAAATTCGAAAAAACAAAATCAAAAAATCGAAACTGAAGAATATTTCAATCAATTTAAAATTGCTTGGGCTTGATTCTTATGCACTTTTCAACTTTTTTTTGAAATAAAATTTCAACTTTTTTCTATTTTCCTGATTTATGGGTTAACATGAATGATTTCACAATCCCA</canonical>
            <polymorphic>AAAATCGAAAATTGAAATTTTTTTGAAAAAATCAAAAAATTCAGAAAAGTTCAGTTTTAAAAGTTTTCAAAATTGACCGAGTTTTGAAAATCTGCTTATGGAGAATCTTGAAATCTCATAATTTCAGAATCTTAAACTTTCAGAATCAAAGGGTTTAAGATTTTTGGAATTCCAGAGTTTCGGAATATTAGAATATCAGAATTTGAGAATCTCAGACTCCTGCATTTCTGAATTTCGGAATTTCTGAAATTTTGAACTCCTGAAATTCTGAATTTCTGAGATTCTAACTTATTTTTGAATTTCTGAGTTTCTGAAAAACCAAAAAATCAAATTCGTCCAGGGATTATTCTACATTTGGTTCTGGAATATTCGGGTTTATCAAATTCTCGATAAATCCAAAATTCGACCATCAAAATACACATTACGGGCTAGATTTCAAGCCAAAGAGAACGTTCGAAGTTTTGCGGTAACTTCTGAAAAAGGATAACTGTAACTATAAMATTTTTTGCAGTTCTCAAAATATGCATTCTTCTTTATCTCTTCGTGTTTGGTTTTCCGATATTCTTTGATTTTGCTTCAATCTTTTGATTTTTTACAAAAATATGAAATTATGCTAAATTATGTCATGGAATTTGGGGACGCTTCGTAAGTACAGTAATCCTTTTTTCGAAAATTAATCAATTTCTTCCAGACATCCCAATGTGATCGTACCAATAATCATGTTATCAGTACCCAGTTGGAAAAAAGAGTTTTTTGAAATTTTCAAATTTTTGCCGGGAATTCGAAAATTTGTATTGGGAAATTTGGAAATTGAAAACGGCGATTTGACGAAAAATTCGAAAAAACAAAATCAAAAAATCGAAACTGAAGAATATTTCAATCAATTTAAAATTGCTTGGGCTTGATTCTTATGCACTTTTCAACTTTTTTTTGAAATAAAATTTCAACTTTTTTCTATTTTCCTGATTTATGGGTTAACATGAATGATTTCACAATCCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGATTATTCTACATTTGGTTCT</pcr_primer_p1>
		<pcr_primer_p2>ATCAAAAGATTGAAGCAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGGATTATTCTACATTTGGTTCTGGAATATTCGGGTTTATCAAATTCTCGATAAATCCAAAATTCGACCATCAAAATACACATTACGGGCTAGATTTCAAGCCAAAGAGAACGTTCGAAGTTTTGCGGTAACTTCTGAAAAAGGATAACTGTAACTATAACATTTTTTGCAGTTCTCAAAATATGCATTCTTCTTTATCTCTTCGTGTTTGGTTTTCCGATATTCTTTGATTTTGCTTCAATCTTTTGAT</canonical_amplicon>
		<polymorphic_amplicon>GGGATTATTCTACATTTGGTTCTGGAATATTCGGGTTTATCAAATTCTCGATAAATCCAAAATTCGACCATCAAAATACACATTACGGGCTAGATTTCAAGCCAAAGAGAACGTTCGAAGTTTTGCGGTAACTTCTGAAAAAGGATAACTGTAACTATAAMATTTTTTGCAGTTCTCAAAATATGCATTCTTCTTTATCTCTTCGTGTTTGGTTTTCCGATATTCTTTGATTTTGCTTCAATCTTTTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13138</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>57754</contig_pos>
        <strand></strand>
        <context>TTTCGAAAAT[T/C]YATCAATTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CATGGAATTTGGGGACGCTTCGTAAGTACAGTAATCCTTTTTTCGAAAAT</left_flank>
        <right_flank>AATCAATTTCTTCCAGACATCCCAATGTGATCGTACCAATAATCATGTTA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTTCGGAATATTAGAATATCAGAATTTGAGAATCTCAGACTCCTGCATTTCTGAATTTCGGAATTTCTGAAATTTTGAACTCCTGAAATTCTGAATTTCTGAGATTCTAACTTATTTTTGAATTTCTGAGTTTCTGAAAAACCAAAAAATCAAATTCGTCCAGGGATTATTCTACATTTGGTTCTGGAATATTCGGGTTTATCAAATTCTCGATAAATCCAAAATTCGACCATCAAAATACACATTACGGGCTAGATTTCAAGCCAAAGAGAACGTTCGAAGTTTTGCGGTAACTTCTGAAAAAGGATAACTGTAACTATAACATTTTTTGCAGTTCTCAAAATATGCATTCTTCTTTATCTCTTCGTGTTTGGTTTTCCGATATTCTTTGATTTTGCTTCAATCTTTTGATTTTTTACAAAAATATGAAATTATGCTAAATTATGTCATGGAATTTGGGGACGCTTCGTAAGTACAGTAATCCTTTTTTCGAAAATTAATCAATTTCTTCCAGACATCCCAATGTGATCGTACCAATAATCATGTTATCAGTACCCAGTTGGAAAAAAGAGTTTTTTGAAATTTTCAAATTTTTGCCGGGAATTCGAAAATTTGTATTGGGAAATTTGGAAATTGAAAACGGCGATTTGACGAAAAATTCGAAAAAACAAAATCAAAAAATCGAAACTGAAGAATATTTCAATCAATTTAAAATTGCTTGGGCTTGATTCTTATGCACTTTTCAACTTTTTTTTGAAATAAAATTTCAACTTTTTTCTATTTTCCTGATTTATGGGTTAACATGAATGATTTCACAATCCCAAAAACTTCAGAATCTCATATTAGAAATTCAGAAATTCAGAATCTCAGAAATTCAGAATCTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAATCTCAGAATCTCAGAATCTCTG</canonical>
            <polymorphic>AGTTTCGGAATATTAGAATATCAGAATTTGAGAATCTCAGACTCCTGCATTTCTGAATTTCGGAATTTCTGAAATTTTGAACTCCTGAAATTCTGAATTTCTGAGATTCTAACTTATTTTTGAATTTCTGAGTTTCTGAAAAACCAAAAAATCAAATTCGTCCAGGGATTATTCTACATTTGGTTCTGGAATATTCGGGTTTATCAAATTCTCGATAAATCCAAAATTCGACCATCAAAATACACATTACGGGCTAGATTTCAAGCCAAAGAGAACGTTCGAAGTTTTGCGGTAACTTCTGAAAAAGGATAACTGTAACTATAACATTTTTTGCAGTTCTCAAAATATGCATTCTTCTTTATCTCTTCGTGTTTGGTTTTCCGATATTCTTTGATTTTGCTTCAATCTTTTGATTTTTTACAAAAATATGAAATTATGCTAAATTATGTCATGGAATTTGGGGACGCTTCGTAAGTACAGTAATCCTTTTTTCGAAAATYAATCAATTTCTTCCAGACATCCCAATGTGATCGTACCAATAATCATGTTATCAGTACCCAGTTGGAAAAAAGAGTTTTTTGAAATTTTCAAATTTTTGCCGGGAATTCGAAAATTTGTATTGGGAAATTTGGAAATTGAAAACGGCGATTTGACGAAAAATTCGAAAAAACAAAATCAAAAAATCGAAACTGAAGAATATTTCAATCAATTTAAAATTGCTTGGGCTTGATTCTTATGCACTTTTCAACTTTTTTTTGAAATAAAATTTCAACTTTTTTCTATTTTCCTGATTTATGGGTTAACATGAATGATTTCACAATCCCAAAAACTTCAGAATCTCATATTAGAAATTCAGAAATTCAGAATCTCAGAAATTCAGAATCTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAATCTCAGAATCTCAGAATCTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>499 212 200 89</canonical_bands>
                <polymorphic_bands>711 200 89</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>207 85 78 52 50 49 42 32 31 31 27 25 24 18 16 16 16 14 13 13 10 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7</canonical_bands>
                <polymorphic_bands>207 85 78 52 50 50 49 32 31 31 27 25 24 18 16 16 16 14 13 13 10 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTCTTTGATTTTGCTTCAATC</pcr_primer_p1>
		<pcr_primer_p2>TCCAAATTTCCCAATACAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATTCTTTGATTTTGCTTCAATCTTTTGATTTTTTACAAAAATATGAAATTATGCTAAATTATGTCATGGAATTTGGGGACGCTTCGTAAGTACAGTAATCCTTTTTTCGAAAATTAATCAATTTCTTCCAGACATCCCAATGTGATCGTACCAATAATCATGTTATCAGTACCCAGTTGGAAAAAAGAGTTTTTTGAAATTTTCAAATTTTTGCCGGGAATTCGAAAATTTGTATTGGGAAATTTGGA</canonical_amplicon>
		<polymorphic_amplicon>TATTCTTTGATTTTGCTTCAATCTTTTGATTTTTTACAAAAATATGAAATTATGCTAAATTATGTCATGGAATTTGGGGACGCTTCGTAAGTACAGTAATCCTTTTTTCGAAAATYAATCAATTTCTTCCAGACATCCCAATGTGATCGTACCAATAATCATGTTATCAGTACCCAGTTGGAAAAAAGAGTTTTTTGAAATTTTCAAATTTTTGCCGGGAATTCGAAAATTTGTATTGGGAAATTTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13139</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>57909</contig_pos>
        <strand>+</strand>
        <context>GCGATTTGAC[A/G]AAAAATTCGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCGAAAATTTGTATTGGGAAATTTGGAAATTGAAAACGGCGATTTGAC</left_flank>
        <right_flank>AAAAATTCGAAAAAACAAAATCAAAAAATCGAAACTGAAGAATATTTCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCGTCCAGGGATTATTCTACATTTGGTTCTGGAATATTCGGGTTTATCAAATTCTCGATAAATCCAAAATTCGACCATCAAAATACACATTACGGGCTAGATTTCAAGCCAAAGAGAACGTTCGAAGTTTTGCGGTAACTTCTGAAAAAGGATAACTGTAACTATAACATTTTTTGCAGTTCTCAAAATATGCATTCTTCTTTATCTCTTCGTGTTTGGTTTTCCGATATTCTTTGATTTTGCTTCAATCTTTTGATTTTTTACAAAAATATGAAATTATGCTAAATTATGTCATGGAATTTGGGGACGCTTCGTAAGTACAGTAATCCTTTTTTCGAAAATTAATCAATTTCTTCCAGACATCCCAATGTGATCGTACCAATAATCATGTTATCAGTACCCAGTTGGAAAAAAGAGTTTTTTGAAATTTTCAAATTTTTGCCGGGAATTCGAAAATTTGTATTGGGAAATTTGGAAATTGAAAACGGCGATTTGACGAAAAATTCGAAAAAACAAAATCAAAAAATCGAAACTGAAGAATATTTCAATCAATTTAAAATTGCTTGGGCTTGATTCTTATGCACTTTTCAACTTTTTTTTGAAATAAAATTTCAACTTTTTTCTATTTTCCTGATTTATGGGTTAACATGAATGATTTCACAATCCCAAAAACTTCAGAATCTCATATTAGAAATTCAGAAATTCAGAATCTCAGAAATTCAGAATCTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAATCTCAGAATCTCAGAATCTCTGATTTTTAGAATTCCAGAATTTCCAAATTTCAGAATTCAAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAAAAGCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAAAAAATCGAAATTTAACAAAACCACTTG</canonical>
            <polymorphic>ATTCGTCCAGGGATTATTCTACATTTGGTTCTGGAATATTCGGGTTTATCAAATTCTCGATAAATCCAAAATTCGACCATCAAAATACACATTACGGGCTAGATTTCAAGCCAAAGAGAACGTTCGAAGTTTTGCGGTAACTTCTGAAAAAGGATAACTGTAACTATAACATTTTTTGCAGTTCTCAAAATATGCATTCTTCTTTATCTCTTCGTGTTTGGTTTTCCGATATTCTTTGATTTTGCTTCAATCTTTTGATTTTTTACAAAAATATGAAATTATGCTAAATTATGTCATGGAATTTGGGGACGCTTCGTAAGTACAGTAATCCTTTTTTCGAAAATTAATCAATTTCTTCCAGACATCCCAATGTGATCGTACCAATAATCATGTTATCAGTACCCAGTTGGAAAAAAGAGTTTTTTGAAATTTTCAAATTTTTGCCGGGAATTCGAAAATTTGTATTGGGAAATTTGGAAATTGAAAACGGCGATTTGACRAAAAATTCGAAAAAACAAAATCAAAAAATCGAAACTGAAGAATATTTCAATCAATTTAAAATTGCTTGGGCTTGATTCTTATGCACTTTTCAACTTTTTTTTGAAATAAAATTTCAACTTTTTTCTATTTTCCTGATTTATGGGTTAACATGAATGATTTCACAATCCCAAAAACTTCAGAATCTCATATTAGAAATTCAGAAATTCAGAATCTCAGAAATTCAGAATCTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAATCTCAGAATCTCAGAATCTCTGATTTTTAGAATTCCAGAATTTCCAAATTTCAGAATTCAAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAAAAGCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAAAAAATCGAAATTTAACAAAACCACTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCAGTACCCAGTTGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCATAAATCAGGAAAATAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATCAGTACCCAGTTGGAAAAAAGAGTTTTTTGAAATTTTCAAATTTTTGCCGGGAATTCGAAAATTTGTATTGGGAAATTTGGAAATTGAAAACGGCGATTTGACGAAAAATTCGAAAAAACAAAATCAAAAAATCGAAACTGAAGAATATTTCAATCAATTTAAAATTGCTTGGGCTTGATTCTTATGCACTTTTCAACTTTTTTTTGAAATAAAATTTCAACTTTTTTCTATTTTCCTGATTTATGG</canonical_amplicon>
		<polymorphic_amplicon>TATCAGTACCCAGTTGGAAAAAAGAGTTTTTTGAAATTTTCAAATTTTTGCCGGGAATTCGAAAATTTGTATTGGGAAATTTGGAAATTGAAAACGGCGATTTGACRAAAAATTCGAAAAAACAAAATCAAAAAATCGAAACTGAAGAATATTTCAATCAATTTAAAATTGCTTGGGCTTGATTCTTATGCACTTTTCAACTTTTTTTTGAAATAAAATTTCAACTTTTTTCTATTTTCCTGATTTATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13140</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>59387</contig_pos>
        <strand>+</strand>
        <context>CATCAAATAA[A/T]TAAAAAATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGAATTCCTGAATTCTGAAATTTTGAATTACACATTTTCCATCAAATAA</left_flank>
        <right_flank>TAAAAAATTGAATTTTCCAGATCCAAAAAAAGTCTACTCGGAATTCTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGAGATTCCGAGATTCTGAAATTCTGAGATTCTGACATTCTGGAGATTTTGACACTCTGAAAAAAGTTGAAAAAATCCAAAAGGTTCTTTTTTATCGAAGGAAATTTTCTGAAATTTTGAAAATCTGGGATTCTGAAACCCTAAACTTCCAGGATCGAGATTCTGAGATTCTAAGTTTCGAAGATTTTGAGATTCTGAGATCCTAGAAATCCGGGATTCTAAGAATCAGAGAATCAGAGATTCTGAGATTCTGAGATTCTGAATATCTGATGTTTGGAAAATCTGTGCATTCAGAAAGTTTTTATAGATTTGACATTCTGAATTTCTCTTTTGCAAAGAAGGTCTTCATCAATTTTGAATTTTCGTTTTTTTTTTGAATTTTCAGATTTGTAGATTTTTTGGATTTTTTTGTATTTCTGATTTCTCTGAAATTTCATTTCAGGATCTTTGAATTCCTGAATTCTGAAATTTTGAATTACACATTTTCCATCAAATAAATAAAAAATTGAATTTTCCAGATCCAAAAAAAGTCTACTCGGAATTCTTCACCACCTCCAAATACGAAATGATTCAAATCAAAAATTCGTTATTCGATTCGCCATTTTTCTCGATTGGTTCCATTTTGTTGACTCATTATATGGTCTTCGCAATTTTGGGTCTTACAGGGATTACTGTAGAAAGAAGTTTGGCCACTTTTTGGATCAAGTGAGTGTGGCCTAGAAATCTAAAGCTCGGCCATCAAAGTTCATTGGGTTCCTATAGCCTCTAGGCCCAGAAATCTGATTTTCTAGTCCACCAAGCCCACCTTTTTTTTCAGCGACTACGAGAAAAAACCAAGAAATTGGATTCCAATTTTCGTCCTAACTACCCTACAATTAATTTCTTGGCTAATTGCCTACTCGGCAATTCAAATTTTACTGGATATTTATTCCTGGTTGATGATTGGAATTCTAGTATTGACTTTCAATTTTTTGGTAGGTCTGAAAATTTGAATTTTT</canonical>
            <polymorphic>ATTGAGATTCCGAGATTCTGAAATTCTGAGATTCTGACATTCTGGAGATTTTGACACTCTGAAAAAAGTTGAAAAAATCCAAAAGGTTCTTTTTTATCGAAGGAAATTTTCTGAAATTTTGAAAATCTGGGATTCTGAAACCCTAAACTTCCAGGATCGAGATTCTGAGATTCTAAGTTTCGAAGATTTTGAGATTCTGAGATCCTAGAAATCCGGGATTCTAAGAATCAGAGAATCAGAGATTCTGAGATTCTGAGATTCTGAATATCTGATGTTTGGAAAATCTGTGCATTCAGAAAGTTTTTATAGATTTGACATTCTGAATTTCTCTTTTGCAAAGAAGGTCTTCATCAATTTTGAATTTTCGTTTTTTTTTTGAATTTTCAGATTTGTAGATTTTTTGGATTTTTTTGTATTTCTGATTTCTCTGAAATTTCATTTCAGGATCTTTGAATTCCTGAATTCTGAAATTTTGAATTACACATTTTCCATCAAATAAWTAAAAAATTGAATTTTCCAGATCCAAAAAAAGTCTACTCGGAATTCTTCACCACCTCCAAATACGAAATGATTCAAATCAAAAATTCGTTATTCGATTCGCCATTTTTCTCGATTGGTTCCATTTTGTTGACTCATTATATGGTCTTCGCAATTTTGGGTCTTACAGGGATTACTGTAGAAAGAAGTTTGGCCACTTTTTGGATCAAGTGAGTGTGGCCTAGAAATCTAAAGCTCGGCCATCAAAGTTCATTGGGTTCCTATAGCCTCTAGGCCCAGAAATCTGATTTTCTAGTCCACCAAGCCCACCTTTTTTTTCAGCGACTACGAGAAAAAACCAAGAAATTGGATTCCAATTTTCGTCCTAACTACCCTACAATTAATTTCTTGGCTAATTGCCTACTCGGCAATTCAAATTTTACTGGATATTTATTCCTGGTTGATGATTGGAATTCTAGTATTGACTTTCAATTTTTTGGTAGGTCTGAAAATTTGAATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTCATTTCAGGATCTTTG</pcr_primer_p1>
		<pcr_primer_p2>TCTACAGTAATCCCTGTAAGACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTTCATTTCAGGATCTTTGAATTCCTGAATTCTGAAATTTTGAATTACACATTTTCCATCAAATAAATAAAAAATTGAATTTTCCAGATCCAAAAAAAGTCTACTCGGAATTCTTCACCACCTCCAAATACGAAATGATTCAAATCAAAAATTCGTTATTCGATTCGCCATTTTTCTCGATTGGTTCCATTTTGTTGACTCATTATATGGTCTTCGCAATTTTGGGTCTTACAGGGATTACTGTAGA</canonical_amplicon>
		<polymorphic_amplicon>AAATTTCATTTCAGGATCTTTGAATTCCTGAATTCTGAAATTTTGAATTACACATTTTCCATCAAATAAWTAAAAAATTGAATTTTCCAGATCCAAAAAAAGTCTACTCGGAATTCTTCACCACCTCCAAATACGAAATGATTCAAATCAAAAATTCGTTATTCGATTCGCCATTTTTCTCGATTGGTTCCATTTTGTTGACTCATTATATGGTCTTCGCAATTTTGGGTCTTACAGGGATTACTGTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13141</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>90597</contig_pos>
        <strand>+</strand>
        <context>AGTCTCTTAT[C/T]GATGTTCCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACAATCTGGAATCAGTTGATGAGCAAACCGGAGCCGATGAGTCTCTTAT</left_flank>
        <right_flank>GATGTTCCGAAACTGAAGAGAAAGAGACCACTTGTAGTCACCAAGTCGGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAAGACAAGCTTTTTTAAATCAAAATTTCCAGATCGAAGAGAAAGCGGCGTTGAAAAGCCAAGTCAACAAAGCAGTGAAAGAAGCCTTGGAGAAACAAGTGAAGTCAACGTCGATTTTCGATAACGACGGAACTCGTGACTCTTTGTGCTCCGAATCATCTTTCGGGAGCCAACCAGCACCAAAGAAGAAGTCAAAGAAGGTGTTGTTTTCCGGCGAACTTGAGCATGTCAAAGTTTTCGACAAACGTGTGCATGATCTTCAAATCAAACCATCTGAAGCGTCTCCAGGAAGAGGAATTCTGAGATCTCCACTAGACAAAAAGGCCAAGAAGCTCCCAAAGTCGGTGAAAGTTGTTGCTGAAGAGCAAGAGGTCTCTGCTCCCCCAAAGAAGAAGCTGAAAGTCAGCGCTAAGAAAGTAACCGTCTCCGAACCAGCTGAAGAGGAGGACAATCTGGAATCAGTTGATGAGCAAACCGGAGCCGATGAGTCTCTTATTGATGTTCCGAAACTGAAGAGAAAGAGACCACTTGTAGTCACCAAGTCGGTTAAAGAACAGCTACTGAACATGCCAAGACAAGAGAGAAAGAGGTTCCTGAAAGAGCTCAAAAAGAAGAGGAAGCCAGAAGGAGAGCGTGCCCATAAGTGCAAGATTCTTTGGGAAAAAATCAGAATGGGAAAGACGCCAAAGGCAGAGAAGGACGAGGCGATTCATGAGTTGTACGGACTGGTTAAAGGACATGCTGCGAAGTTGATCTACTCTCATGACACAAGCAGAGTTATTGAGTGTTTGGTTGCAACTGAAAGAGAAGGAATTATCAACAATTGTAAGTTTTTTTTTAAATTTTTAGATAAAATAATTTTGTTTTCTCTTATAGTGTTCAACGAACTAACGCCAGAGATCGTTAGAATGTCCAAGAACGTCTATTCTAAGTTTTTCGTGAAGAAAATGTTGAAGAACGGCACAAAAGAACAACGCGACCTCATCATCACCGCTTT</canonical>
            <polymorphic>TCAAAAGACAAGCTTTTTTAAATCAAAATTTCCAGATCGAAGAGAAAGCGGCGTTGAAAAGCCAAGTCAACAAAGCAGTGAAAGAAGCCTTGGAGAAACAAGTGAAGTCAACGTCGATTTTCGATAACGACGGAACTCGTGACTCTTTGTGCTCCGAATCATCTTTCGGGAGCCAACCAGCACCAAAGAAGAAGTCAAAGAAGGTGTTGTTTTCCGGCGAACTTGAGCATGTCAAAGTTTTCGACAAACGTGTGCATGATCTTCAAATCAAACCATCTGAAGCGTCTCCAGGAAGAGGAATTCTGAGATCTCCACTAGACAAAAAGGCCAAGAAGCTCCCAAAGTCGGTGAAAGTTGTTGCTGAAGAGCAAGAGGTCTCTGCTCCCCCAAAGAAGAAGCTGAAAGTCAGCGCTAAGAAAGTAACCGTCTCCGAACCAGCTGAAGAGGAGGACAATCTGGAATCAGTTGATGAGCAAACCGGAGCCGATGAGTCTCTTATYGATGTTCCGAAACTGAAGAGAAAGAGACCACTTGTAGTCACCAAGTCGGTTAAAGAACAGCTACTGAACATGCCAAGACAAGAGAGAAAGAGGTTCCTGAAAGAGCTCAAAAAGAAGAGGAAGCCAGAAGGAGAGCGTGCCCATAAGTGCAAGATTCTTTGGGAAAAAATCAGAATGGGAAAGACGCCAAAGGCAGAGAAGGACGAGGCGATTCATGAGTTGTACGGACTGGTTAAAGGACATGCTGCGAAGTTGATCTACTCTCATGACACAAGCAGAGTTATTGAGTGTTTGGTTGCAACTGAAAGAGAAGGAATTATCAACAATTGTAAGTTTTTTTTTAAATTTTTAGATAAAATAATTTTGTTTTCTCTTATAGTGTTCAACGAACTAACGCCAGAGATCGTTAGAATGTCCAAGAACGTCTATTCTAAGTTTTTCGTGAAGAAAATGTTGAAGAACGGCACAAAAGAACAACGCGACCTCATCATCACCGCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAGATCTCCACTAGACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TAACCGACTTGGTGACTACAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGAGATCTCCACTAGACAAAAAGGCCAAGAAGCTCCCAAAGTCGGTGAAAGTTGTTGCTGAAGAGCAAGAGGTCTCTGCTCCCCCAAAGAAGAAGCTGAAAGTCAGCGCTAAGAAAGTAACCGTCTCCGAACCAGCTGAAGAGGAGGACAATCTGGAATCAGTTGATGAGCAAACCGGAGCCGATGAGTCTCTTATTGATGTTCCGAAACTGAAGAGAAAGAGACCACTTGTAGTCACCAAGTCGGTTA</canonical_amplicon>
		<polymorphic_amplicon>CTGAGATCTCCACTAGACAAAAAGGCCAAGAAGCTCCCAAAGTCGGTGAAAGTTGTTGCTGAAGAGCAAGAGGTCTCTGCTCCCCCAAAGAAGAAGCTGAAAGTCAGCGCTAAGAAAGTAACCGTCTCCGAACCAGCTGAAGAGGAGGACAATCTGGAATCAGTTGATGAGCAAACCGGAGCCGATGAGTCTCTTATYGATGTTCCGAAACTGAAGAGAAAGAGACCACTTGTAGTCACCAAGTCGGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13142</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>90690</contig_pos>
        <strand>+</strand>
        <context>AGAGAAAGAG[A/G]TTCCTGAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTCGGTTAAAGAACAGCTACTGAACATGCCAAGACAAGAGAGAAAGAG</left_flank>
        <right_flank>TTCCTGAAAGAGCTCAAAAAGAAGAGGAAGCCAGAAGGAGAGCGTGCCCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAACAAGTGAAGTCAACGTCGATTTTCGATAACGACGGAACTCGTGACTCTTTGTGCTCCGAATCATCTTTCGGGAGCCAACCAGCACCAAAGAAGAAGTCAAAGAAGGTGTTGTTTTCCGGCGAACTTGAGCATGTCAAAGTTTTCGACAAACGTGTGCATGATCTTCAAATCAAACCATCTGAAGCGTCTCCAGGAAGAGGAATTCTGAGATCTCCACTAGACAAAAAGGCCAAGAAGCTCCCAAAGTCGGTGAAAGTTGTTGCTGAAGAGCAAGAGGTCTCTGCTCCCCCAAAGAAGAAGCTGAAAGTCAGCGCTAAGAAAGTAACCGTCTCCGAACCAGCTGAAGAGGAGGACAATCTGGAATCAGTTGATGAGCAAACCGGAGCCGATGAGTCTCTTATTGATGTTCCGAAACTGAAGAGAAAGAGACCACTTGTAGTCACCAAGTCGGTTAAAGAACAGCTACTGAACATGCCAAGACAAGAGAGAAAGAGGTTCCTGAAAGAGCTCAAAAAGAAGAGGAAGCCAGAAGGAGAGCGTGCCCATAAGTGCAAGATTCTTTGGGAAAAAATCAGAATGGGAAAGACGCCAAAGGCAGAGAAGGACGAGGCGATTCATGAGTTGTACGGACTGGTTAAAGGACATGCTGCGAAGTTGATCTACTCTCATGACACAAGCAGAGTTATTGAGTGTTTGGTTGCAACTGAAAGAGAAGGAATTATCAACAATTGTAAGTTTTTTTTTAAATTTTTAGATAAAATAATTTTGTTTTCTCTTATAGTGTTCAACGAACTAACGCCAGAGATCGTTAGAATGTCCAAGAACGTCTATTCTAAGTTTTTCGTGAAGAAAATGTTGAAGAACGGCACAAAAGAACAACGCGACCTCATCATCACCGCTTTCCGTGGCCATGCTCCAACTCTTCTCAGAATCAAGCACGCTGCTGAAGTCCTCGAGTATGCTTACAATGACTTTGCTAATGCTCATCAACGCAA</canonical>
            <polymorphic>AGAAACAAGTGAAGTCAACGTCGATTTTCGATAACGACGGAACTCGTGACTCTTTGTGCTCCGAATCATCTTTCGGGAGCCAACCAGCACCAAAGAAGAAGTCAAAGAAGGTGTTGTTTTCCGGCGAACTTGAGCATGTCAAAGTTTTCGACAAACGTGTGCATGATCTTCAAATCAAACCATCTGAAGCGTCTCCAGGAAGAGGAATTCTGAGATCTCCACTAGACAAAAAGGCCAAGAAGCTCCCAAAGTCGGTGAAAGTTGTTGCTGAAGAGCAAGAGGTCTCTGCTCCCCCAAAGAAGAAGCTGAAAGTCAGCGCTAAGAAAGTAACCGTCTCCGAACCAGCTGAAGAGGAGGACAATCTGGAATCAGTTGATGAGCAAACCGGAGCCGATGAGTCTCTTATTGATGTTCCGAAACTGAAGAGAAAGAGACCACTTGTAGTCACCAAGTCGGTTAAAGAACAGCTACTGAACATGCCAAGACAAGAGAGAAAGAGRTTCCTGAAAGAGCTCAAAAAGAAGAGGAAGCCAGAAGGAGAGCGTGCCCATAAGTGCAAGATTCTTTGGGAAAAAATCAGAATGGGAAAGACGCCAAAGGCAGAGAAGGACGAGGCGATTCATGAGTTGTACGGACTGGTTAAAGGACATGCTGCGAAGTTGATCTACTCTCATGACACAAGCAGAGTTATTGAGTGTTTGGTTGCAACTGAAAGAGAAGGAATTATCAACAATTGTAAGTTTTTTTTTAAATTTTTAGATAAAATAATTTTGTTTTCTCTTATAGTGTTCAACGAACTAACGCCAGAGATCGTTAGAATGTCCAAGAACGTCTATTCTAAGTTTTTCGTGAAGAAAATGTTGAAGAACGGCACAAAAGAACAACGCGACCTCATCATCACCGCTTTCCGTGGCCATGCTCCAACTCTTCTCAGAATCAAGCACGCTGCTGAAGTCCTCGAGTATGCTTACAATGACTTTGCTAATGCTCATCAACGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>499 311 112 78</canonical_bands>
                <polymorphic_bands>611 311 78</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGTCACCAAGTCGGTTAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTGCTTGTGTCATGAGAGTAGAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GTAGTCACCAAGTCGGTTAAAGAACAGCTACTGAACATGCCAAGACAAGAGAGAAAGAGGTTCCTGAAAGAGCTCAAAAAGAAGAGGAAGCCAGAAGGAGAGCGTGCCCATAAGTGCAAGATTCTTTGGGAAAAAATCAGAATGGGAAAGACGCCAAAGGCAGAGAAGGACGAGGCGATTCATGAGTTGTACGGACTGGTTAAAGGACATGCTGCGAAGTTGATCTACTCTCATGACACAAGCAG</canonical_amplicon>
		<polymorphic_amplicon>GTAGTCACCAAGTCGGTTAAAGAACAGCTACTGAACATGCCAAGACAAGAGAGAAAGAGRTTCCTGAAAGAGCTCAAAAAGAAGAGGAAGCCAGAAGGAGAGCGTGCCCATAAGTGCAAGATTCTTTGGGAAAAAATCAGAATGGGAAAGACGCCAAAGGCAGAGAAGGACGAGGCGATTCATGAGTTGTACGGACTGGTTAAAGGACATGCTGCGAAGTTGATCTACTCTCATGACACAAGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13152</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>90940</contig_pos>
        <strand></strand>
        <context>Gttttttttt[A/T]watttttara</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGGTTGCAACTGAAAGAGAAGGAATTATCAACAATTGTAAGTTTTTTTTT</left_flank>
        <right_flank>AATTTTTAGATAAAATAATTTTGTTTTCTCTTATAGTGTTCAACGAACTA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCGGTGAAAGTTGTTGCTGAAGAGCAAGAGGTCTCTGCTCCCCCAAAGAAGAAGCTGAAAGTCAGCGCTAAGAAAGTAACCGTCTCCGAACCAGCTGAAGAGGAGGACAATCTGGAATCAGTTGATGAGCAAACCGGAGCCGATGAGTCTCTTATTGATGTTCCGAAACTGAAGAGAAAGAGACCACTTGTAGTCACCAAGTCGGTTAAAGAACAGCTACTGAACATGCCAAGACAAGAGAGAAAGAGGTTCCTGAAAGAGCTCAAAAAGAAGAGGAAGCCAGAAGGAGAGCGTGCCCATAAGTGCAAGATTCTTTGGGAAAAAATCAGAATGGGAAAGACGCCAAAGGCAGAGAAGGACGAGGCGATTCATGAGTTGTACGGACTGGTTAAAGGACATGCTGCGAAGTTGATCTACTCTCATGACACAAGCAGAGTTATTGAGTGTTTGGTTGCAACTGAAAGAGAAGGAATTATCAACAATTGTAAGTTTTTTTTTAAATTTTTAGATAAAATAATTTTGTTTTCTCTTATAGTGTTCAACGAACTAACGCCAGAGATCGTTAGAATGTCCAAGAACGTCTATTCTAAGTTTTTCGTGAAGAAAATGTTGAAGAACGGCACAAAAGAACAACGCGACCTCATCATCACCGCTTTCCGTGGCCATGCTCCAACTCTTCTCAGAATCAAGCACGCTGCTGAAGTCCTCGAGTATGCTTACAATGACTTTGCTAATGCTCATCAACGCAATGACATTATCACAGAGTTCTATGGAAAGGAGTTTATCATTTTCCGAGTAAGGGATCACGCCTTGCTTATAAATCCGTATTATTTGCCTTGCAGGAGGATAAAATCCGCCCATTATCGGAGATTCTTGCTGAGAAACCAGAAAAGAAAGCTGTGATCATGAAGCATTTGGACGAGGTTATCGGAGCTGTCAACGAGAAGGAGACTCTCAGACTTTCGATTCTCCACAAGCTTATGCTCGACTTCTTTGAGA</canonical>
            <polymorphic>GTCGGTGAAAGTTGTTGCTGAAGAGCAAGAGGTCTCTGCTCCCCCAAAGAAGAAGCTGAAAGTCAGCGCTAAGAAAGTAACCGTCTCCGAACCAGCTGAAGAGGAGGACAATCTGGAATCAGTTGATGAGCAAACCGGAGCCGATGAGTCTCTTATTGATGTTCCGAAACTGAAGAGAAAGAGACCACTTGTAGTCACCAAGTCGGTTAAAGAACAGCTACTGAACATGCCAAGACAAGAGAGAAAGAGGTTCCTGAAAGAGCTCAAAAAGAAGAGGAAGCCAGAAGGAGAGCGTGCCCATAAGTGCAAGATTCTTTGGGAAAAAATCAGAATGGGAAAGACGCCAAAGGCAGAGAAGGACGAGGCGATTCATGAGTTGTACGGACTGGTTAAAGGACATGCTGCGAAGTTGATCTACTCTCATGACACAAGCAGAGTTATTGAGTGTTTGGTTGCAACTGAAAGAGAAGGAATTATCAACAATTGTAAGTTTTTTTTTWAATTTTTAGATAAAATAATTTTGTTTTCTCTTATAGTGTTCAACGAACTAACGCCAGAGATCGTTAGAATGTCCAAGAACGTCTATTCTAAGTTTTTCGTGAAGAAAATGTTGAAGAACGGCACAAAAGAACAACGCGACCTCATCATCACCGCTTTCCGTGGCCATGCTCCAACTCTTCTCAGAATCAAGCACGCTGCTGAAGTCCTCGAGTATGCTTACAATGACTTTGCTAATGCTCATCAACGCAATGACATTATCACAGAGTTCTATGGAAAGGAGTTTATCATTTTCCGAGTAAGGGATCACGCCTTGCTTATAAATCCGTATTATTTGCCTTGCAGGAGGATAAAATCCGCCCATTATCGGAGATTCTTGCTGAGAAACCAGAAAAGAAAGCTGTGATCATGAAGCATTTGGACGAGGTTATCGGAGCTGTCAACGAGAAGGAGACTCTCAGACTTTCGATTCTCCACAAGCTTATGCTCGACTTCTTTGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 207 183 108</canonical_bands>
                <polymorphic_bands>610 207 183</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTTGTACGGACTGGTTAAAG</pcr_primer_p1>
		<pcr_primer_p2>CGTTCTTCAACATTTTCTTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAGTTGTACGGACTGGTTAAAGGACATGCTGCGAAGTTGATCTACTCTCATGACACAAGCAGAGTTATTGAGTGTTTGGTTGCAACTGAAAGAGAAGGAATTATCAACAATTGTAAGTTTTTTTTTAAATTTTTAGATAAAATAATTTTGTTTTCTCTTATAGTGTTCAACGAACTAACGCCAGAGATCGTTAGAATGTCCAAGAACGTCTATTCTAAGTTTTTCGTGAAGAAAATGTTGAAGAACG</canonical_amplicon>
		<polymorphic_amplicon>GAGTTGTACGGACTGGTTAAAGGACATGCTGCGAAGTTGATCTACTCTCATGACACAAGCAGAGTTATTGAGTGTTTGGTTGCAACTGAAAGAGAAGGAATTATCAACAATTGTAAGTTTTTTTTTWAATTTTTAGATAAAATAATTTTGTTTTCTCTTATAGTGTTCAACGAACTAACGCCAGAGATCGTTAGAATGTCCAAGAACGTCTATTCTAAGTTTTTCGTGAAGAAAATGTTGAAGAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13169</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>91005</contig_pos>
        <strand>+</strand>
        <context>CAGAGATCGT[C/T]AGAATGTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAATTTTGTTTTCTCTTATAGTGTTCAACGAACTAACGCCAGAGATCGT</left_flank>
        <right_flank>AGAATGTCCAAGAACGTCTATTCTAAGTTTTTCGTGAAGAAAATGTTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGCTAAGAAAGTAACCGTCTCCGAACCAGCTGAAGAGGAGGACAATCTGGAATCAGTTGATGAGCAAACCGGAGCCGATGAGTCTCTTATTGATGTTCCGAAACTGAAGAGAAAGAGACCACTTGTAGTCACCAAGTCGGTTAAAGAACAGCTACTGAACATGCCAAGACAAGAGAGAAAGAGGTTCCTGAAAGAGCTCAAAAAGAAGAGGAAGCCAGAAGGAGAGCGTGCCCATAAGTGCAAGATTCTTTGGGAAAAAATCAGAATGGGAAAGACGCCAAAGGCAGAGAAGGACGAGGCGATTCATGAGTTGTACGGACTGGTTAAAGGACATGCTGCGAAGTTGATCTACTCTCATGACACAAGCAGAGTTATTGAGTGTTTGGTTGCAACTGAAAGAGAAGGAATTATCAACAATTGTAAGTTTTTTTTTAAATTTTTAGATAAAATAATTTTGTTTTCTCTTATAGTGTTCAACGAACTAACGCCAGAGATCGTTAGAATGTCCAAGAACGTCTATTCTAAGTTTTTCGTGAAGAAAATGTTGAAGAACGGCACAAAAGAACAACGCGACCTCATCATCACCGCTTTCCGTGGCCATGCTCCAACTCTTCTCAGAATCAAGCACGCTGCTGAAGTCCTCGAGTATGCTTACAATGACTTTGCTAATGCTCATCAACGCAATGACATTATCACAGAGTTCTATGGAAAGGAGTTTATCATTTTCCGAGTAAGGGATCACGCCTTGCTTATAAATCCGTATTATTTGCCTTGCAGGAGGATAAAATCCGCCCATTATCGGAGATTCTTGCTGAGAAACCAGAAAAGAAAGCTGTGATCATGAAGCATTTGGACGAGGTTATCGGAGCTGTCAACGAGAAGGAGACTCTCAGACTTTCGATTCTCCACAAGCTTATGCTCGACTTCTTTGAGAACTGTGATGAAGAAAAGAAGACGAATCTTCTGGACTCTCTCAAAGACAAAATTCCCGAGTTCATC</canonical>
            <polymorphic>GCGCTAAGAAAGTAACCGTCTCCGAACCAGCTGAAGAGGAGGACAATCTGGAATCAGTTGATGAGCAAACCGGAGCCGATGAGTCTCTTATTGATGTTCCGAAACTGAAGAGAAAGAGACCACTTGTAGTCACCAAGTCGGTTAAAGAACAGCTACTGAACATGCCAAGACAAGAGAGAAAGAGGTTCCTGAAAGAGCTCAAAAAGAAGAGGAAGCCAGAAGGAGAGCGTGCCCATAAGTGCAAGATTCTTTGGGAAAAAATCAGAATGGGAAAGACGCCAAAGGCAGAGAAGGACGAGGCGATTCATGAGTTGTACGGACTGGTTAAAGGACATGCTGCGAAGTTGATCTACTCTCATGACACAAGCAGAGTTATTGAGTGTTTGGTTGCAACTGAAAGAGAAGGAATTATCAACAATTGTAAGTTTTTTTTTAAATTTTTAGATAAAATAATTTTGTTTTCTCTTATAGTGTTCAACGAACTAACGCCAGAGATCGTYAGAATGTCCAAGAACGTCTATTCTAAGTTTTTCGTGAAGAAAATGTTGAAGAACGGCACAAAAGAACAACGCGACCTCATCATCACCGCTTTCCGTGGCCATGCTCCAACTCTTCTCAGAATCAAGCACGCTGCTGAAGTCCTCGAGTATGCTTACAATGACTTTGCTAATGCTCATCAACGCAATGACATTATCACAGAGTTCTATGGAAAGGAGTTTATCATTTTCCGAGTAAGGGATCACGCCTTGCTTATAAATCCGTATTATTTGCCTTGCAGGAGGATAAAATCCGCCCATTATCGGAGATTCTTGCTGAGAAACCAGAAAAGAAAGCTGTGATCATGAAGCATTTGGACGAGGTTATCGGAGCTGTCAACGAGAAGGAGACTCTCAGACTTTCGATTCTCCACAAGCTTATGCTCGACTTCTTTGAGAACTGTGATGAAGAAAAGAAGACGAATCTTCTGGACTCTCTCAAAGACAAAATTCCCGAGTTCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAACTGAAAGAGAAGGAATTAT</pcr_primer_p1>
		<pcr_primer_p2>GTGCTTGATTCTGAGAAGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GCAACTGAAAGAGAAGGAATTATCAACAATTGTAAGTTTTTTTTTAAATTTTTAGATAAAATAATTTTGTTTTCTCTTATAGTGTTCAACGAACTAACGCCAGAGATCGTTAGAATGTCCAAGAACGTCTATTCTAAGTTTTTCGTGAAGAAAATGTTGAAGAACGGCACAAAAGAACAACGCGACCTCATCATCACCGCTTTCCGTGGCCATGCTCCAACTCTTCTCAGAATCAAGCAC</canonical_amplicon>
		<polymorphic_amplicon>GCAACTGAAAGAGAAGGAATTATCAACAATTGTAAGTTTTTTTTTAAATTTTTAGATAAAATAATTTTGTTTTCTCTTATAGTGTTCAACGAACTAACGCCAGAGATCGTYAGAATGTCCAAGAACGTCTATTCTAAGTTTTTCGTGAAGAAAATGTTGAAGAACGGCACAAAAGAACAACGCGACCTCATCATCACCGCTTTCCGTGGCCATGCTCCAACTCTTCTCAGAATCAAGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13170</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>92551</contig_pos>
        <strand>+</strand>
        <context>GAAACAACAG[A/C]TTGGCGGCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGACGAGCGAGTATCGGTGGCGTTGGCAGAAGGGCTCACGAAACAACAG</left_flank>
        <right_flank>TTGGCGGCTGGGTGACATGCAACAGAGGTTGCCATGTTCTTCTCAAGATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCAAATATTTTTTTTAATTCCCGGCAAAACTGAAAACTACGAAGAGTTGGCAGTTTTTCTGTAATTTTTCATTCGATTCTTGGGAAATTTTCAGACCCGTTTAGGTTTTTCAGCCATTTTCAAAGATTTTCAGTTTTGTCGACCTTCTAGTAGGTTCCAGATGCGATTTTCAAAGTTGTTTGAATTTTTCTTTGTTGCTATTTGAAACTACATAATTTTCTATACATTTTTATTCGAAAAAAGTTGAATTGCTCCAATTTTCAGCCAAATTCGATTTGTTCGACAGACAAGTCCCATCAGACGGTCGCAAGGCGTGCAATCAAGCTCTCGTTGAGCTAGCCAAAAAGGATTTTGTGCCAATGGACCAAGAAGGATTCCACATCATCGAACATCAGTCTGGAAACTTTGTCCTTATGGCTATCATGCGTTGCGATACGGCTCTGCCAGAAGACGAGCGAGTATCGGTGGCGTTGGCAGAAGGGCTCACGAAACAACAGCTTGGCGGCTGGGTGACATGCAACAGAGGTTGCCATGTTCTTCTCAAGATGCTCCAAGTCGGCGGGCCAAAAGTGGTTGAGAAGCTGAAGGCGTCGATCAGCAGAAAACATTTGGATGGGTACAGCTCGAAAGGAGCAAACCTGTTGAAGGCACAATTGGACGGAAAATCCACCAAGCATTGATTTTTTTTAATTCTAAAGGCCTTTTTTCTCTTATACATACCCCCTTAATACCCATCTTCGTTGTTCTCGTTATATTGTTTTGTTGATTCTTCTTCTTGTTTTACTCTCTATTTTGTGTTAATTTTTTTTGTTGGAGAATTGATAATAAGTTTTATTATCATACATCTAGACTAGATATTTTAAATGCATTGGGTTTCAGTTACTGAGCTAATTGGTACAGCTAAGACGGGAGAGGATCATTTGGGGGGGGGGGGGAACCGTAAAAAATACAAAGGTATTCAGATATTATTACAATTTTCAGTTATTATCGGGACATTG</canonical>
            <polymorphic>TCTCAAATATTTTTTTTAATTCCCGGCAAAACTGAAAACTACGAAGAGTTGGCAGTTTTTCTGTAATTTTTCATTCGATTCTTGGGAAATTTTCAGACCCGTTTAGGTTTTTCAGCCATTTTCAAAGATTTTCAGTTTTGTCGACCTTCTAGTAGGTTCCAGATGCGATTTTCAAAGTTGTTTGAATTTTTCTTTGTTGCTATTTGAAACTACATAATTTTCTATACATTTTTATTCGAAAAAAGTTGAATTGCTCCAATTTTCAGCCAAATTCGATTTGTTCGACAGACAAGTCCCATCAGACGGTCGCAAGGCGTGCAATCAAGCTCTCGTTGAGCTAGCCAAAAAGGATTTTGTGCCAATGGACCAAGAAGGATTCCACATCATCGAACATCAGTCTGGAAACTTTGTCCTTATGGCTATCATGCGTTGCGATACGGCTCTGCCAGAAGACGAGCGAGTATCGGTGGCGTTGGCAGAAGGGCTCACGAAACAACAGMTTGGCGGCTGGGTGACATGCAACAGAGGTTGCCATGTTCTTCTCAAGATGCTCCAAGTCGGCGGGCCAAAAGTGGTTGAGAAGCTGAAGGCGTCGATCAGCAGAAAACATTTGGATGGGTACAGCTCGAAAGGAGCAAACCTGTTGAAGGCACAATTGGACGGAAAATCCACCAAGCATTGATTTTTTTTAATTCTAAAGGCCTTTTTTCTCTTATACATACCCCCTTAATACCCATCTTCGTTGTTCTCGTTATATTGTTTTGTTGATTCTTCTTCTTGTTTTACTCTCTATTTTGTGTTAATTTTTTTTGTTGGAGAATTGATAATAAGTTTTATTATCATACATCTAGACTAGATATTTTAAATGCATTGGGTTTCAGTTACTGAGCTAATTGGTACAGCTAAGACGGGAGAGGATCATTTGGGGGGGGGGGGGAACCGTAAAAAATACAAAGGTATTCAGATATTATTACAATTTTCAGTTATTATCGGGACATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>326 265 162 98 84 41 13 11</canonical_bands>
                <polymorphic_bands>326 265 246 98 41 13 11</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>188 151 115 98 78 77 60 58 44 41 21 18 15 13 11 8 4</canonical_bands>
                <polymorphic_bands>188 151 115 98 78 77 60 58 44 41 23 21 18 13 11 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCCACATCATCGAACATC</pcr_primer_p1>
		<pcr_primer_p2>GTACCCATCCAAATGTTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTCCACATCATCGAACATCAGTCTGGAAACTTTGTCCTTATGGCTATCATGCGTTGCGATACGGCTCTGCCAGAAGACGAGCGAGTATCGGTGGCGTTGGCAGAAGGGCTCACGAAACAACAGCTTGGCGGCTGGGTGACATGCAACAGAGGTTGCCATGTTCTTCTCAAGATGCTCCAAGTCGGCGGGCCAAAAGTGGTTGAGAAGCTGAAGGCGTCGATCAGCAGAAAACATTTGGATGGGTAC</canonical_amplicon>
		<polymorphic_amplicon>ATTCCACATCATCGAACATCAGTCTGGAAACTTTGTCCTTATGGCTATCATGCGTTGCGATACGGCTCTGCCAGAAGACGAGCGAGTATCGGTGGCGTTGGCAGAAGGGCTCACGAAACAACAGMTTGGCGGCTGGGTGACATGCAACAGAGGTTGCCATGTTCTTCTCAAGATGCTCCAAGTCGGCGGGCCAAAAGTGGTTGAGAAGCTGAAGGCGTCGATCAGCAGAAAACATTTGGATGGGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13171</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>92512</contig_pos>
        <strand>+</strand>
        <context>AGACGAGCGA[G/T]TATCGGTGGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCCTTATGGCTATCATGCGTTGCGATACGGCTCTGCCAGAAGACGAGCGA</left_flank>
        <right_flank>TATCGGTGGCGTTGGCAGAAGGGCTCACGAAACAACAGCTTGGCGGCTGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATTGTGTCAAAGAAGGATAAAATTCGGGAAGTCGCTTCTCAAATATTTTTTTTAATTCCCGGCAAAACTGAAAACTACGAAGAGTTGGCAGTTTTTCTGTAATTTTTCATTCGATTCTTGGGAAATTTTCAGACCCGTTTAGGTTTTTCAGCCATTTTCAAAGATTTTCAGTTTTGTCGACCTTCTAGTAGGTTCCAGATGCGATTTTCAAAGTTGTTTGAATTTTTCTTTGTTGCTATTTGAAACTACATAATTTTCTATACATTTTTATTCGAAAAAAGTTGAATTGCTCCAATTTTCAGCCAAATTCGATTTGTTCGACAGACAAGTCCCATCAGACGGTCGCAAGGCGTGCAATCAAGCTCTCGTTGAGCTAGCCAAAAAGGATTTTGTGCCAATGGACCAAGAAGGATTCCACATCATCGAACATCAGTCTGGAAACTTTGTCCTTATGGCTATCATGCGTTGCGATACGGCTCTGCCAGAAGACGAGCGAGTATCGGTGGCGTTGGCAGAAGGGCTCACGAAACAACAGCTTGGCGGCTGGGTGACATGCAACAGAGGTTGCCATGTTCTTCTCAAGATGCTCCAAGTCGGCGGGCCAAAAGTGGTTGAGAAGCTGAAGGCGTCGATCAGCAGAAAACATTTGGATGGGTACAGCTCGAAAGGAGCAAACCTGTTGAAGGCACAATTGGACGGAAAATCCACCAAGCATTGATTTTTTTTAATTCTAAAGGCCTTTTTTCTCTTATACATACCCCCTTAATACCCATCTTCGTTGTTCTCGTTATATTGTTTTGTTGATTCTTCTTCTTGTTTTACTCTCTATTTTGTGTTAATTTTTTTTGTTGGAGAATTGATAATAAGTTTTATTATCATACATCTAGACTAGATATTTTAAATGCATTGGGTTTCAGTTACTGAGCTAATTGGTACAGCTAAGACGGGAGAGGATCATTTGGGGGGGGGGGGGAACCGTAAAAAATACAAAGGTATT</canonical>
            <polymorphic>CAAATTGTGTCAAAGAAGGATAAAATTCGGGAAGTCGCTTCTCAAATATTTTTTTTAATTCCCGGCAAAACTGAAAACTACGAAGAGTTGGCAGTTTTTCTGTAATTTTTCATTCGATTCTTGGGAAATTTTCAGACCCGTTTAGGTTTTTCAGCCATTTTCAAAGATTTTCAGTTTTGTCGACCTTCTAGTAGGTTCCAGATGCGATTTTCAAAGTTGTTTGAATTTTTCTTTGTTGCTATTTGAAACTACATAATTTTCTATACATTTTTATTCGAAAAAAGTTGAATTGCTCCAATTTTCAGCCAAATTCGATTTGTTCGACAGACAAGTCCCATCAGACGGTCGCAAGGCGTGCAATCAAGCTCTCGTTGAGCTAGCCAAAAAGGATTTTGTGCCAATGGACCAAGAAGGATTCCACATCATCGAACATCAGTCTGGAAACTTTGTCCTTATGGCTATCATGCGTTGCGATACGGCTCTGCCAGAAGACGAGCGAKTATCGGTGGCGTTGGCAGAAGGGCTCACGAAACAACAGCTTGGCGGCTGGGTGACATGCAACAGAGGTTGCCATGTTCTTCTCAAGATGCTCCAAGTCGGCGGGCCAAAAGTGGTTGAGAAGCTGAAGGCGTCGATCAGCAGAAAACATTTGGATGGGTACAGCTCGAAAGGAGCAAACCTGTTGAAGGCACAATTGGACGGAAAATCCACCAAGCATTGATTTTTTTTAATTCTAAAGGCCTTTTTTCTCTTATACATACCCCCTTAATACCCATCTTCGTTGTTCTCGTTATATTGTTTTGTTGATTCTTCTTCTTGTTTTACTCTCTATTTTGTGTTAATTTTTTTTGTTGGAGAATTGATAATAAGTTTTATTATCATACATCTAGACTAGATATTTTAAATGCATTGGGTTTCAGTTACTGAGCTAATTGGTACAGCTAAGACGGGAGAGGATCATTTGGGGGGGGGGGGGAACCGTAAAAAATACAAAGGTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCACATCATCGAACATC</pcr_primer_p1>
		<pcr_primer_p2>GTACCCATCCAAATGTTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTCCACATCATCGAACATCAGTCTGGAAACTTTGTCCTTATGGCTATCATGCGTTGCGATACGGCTCTGCCAGAAGACGAGCGAGTATCGGTGGCGTTGGCAGAAGGGCTCACGAAACAACAGCTTGGCGGCTGGGTGACATGCAACAGAGGTTGCCATGTTCTTCTCAAGATGCTCCAAGTCGGCGGGCCAAAAGTGGTTGAGAAGCTGAAGGCGTCGATCAGCAGAAAACATTTGGATGGGTAC</canonical_amplicon>
		<polymorphic_amplicon>ATTCCACATCATCGAACATCAGTCTGGAAACTTTGTCCTTATGGCTATCATGCGTTGCGATACGGCTCTGCCAGAAGACGAGCGAKTATCGGTGGCGTTGGCAGAAGGGCTCACGAAACAACAGCTTGGCGGCTGGGTGACATGCAACAGAGGTTGCCATGTTCTTCTCAAGATGCTCCAAGTCGGCGGGCCAAAAGTGGTTGAGAAGCTGAAGGCGTCGATCAGCAGAAAACATTTGGATGGGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13172</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>92447</contig_pos>
        <strand>+</strand>
        <context>ATCGAACATC[A/T]GTCTGGAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAGGATTTTGTGCCAATGGACCAAGAAGGATTCCACATCATCGAACATC</left_flank>
        <right_flank>GTCTGGAAACTTTGTCCTTATGGCTATCATGCGTTGCGATACGGCTCTGC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCGAAATTCGTCGCTGCTTGCCTTGAAACCACATGTAAGTTGTTTTATATTTTTTTACTGCGTCAAATTGTGTCAAAGAAGGATAAAATTCGGGAAGTCGCTTCTCAAATATTTTTTTTAATTCCCGGCAAAACTGAAAACTACGAAGAGTTGGCAGTTTTTCTGTAATTTTTCATTCGATTCTTGGGAAATTTTCAGACCCGTTTAGGTTTTTCAGCCATTTTCAAAGATTTTCAGTTTTGTCGACCTTCTAGTAGGTTCCAGATGCGATTTTCAAAGTTGTTTGAATTTTTCTTTGTTGCTATTTGAAACTACATAATTTTCTATACATTTTTATTCGAAAAAAGTTGAATTGCTCCAATTTTCAGCCAAATTCGATTTGTTCGACAGACAAGTCCCATCAGACGGTCGCAAGGCGTGCAATCAAGCTCTCGTTGAGCTAGCCAAAAAGGATTTTGTGCCAATGGACCAAGAAGGATTCCACATCATCGAACATCAGTCTGGAAACTTTGTCCTTATGGCTATCATGCGTTGCGATACGGCTCTGCCAGAAGACGAGCGAGTATCGGTGGCGTTGGCAGAAGGGCTCACGAAACAACAGCTTGGCGGCTGGGTGACATGCAACAGAGGTTGCCATGTTCTTCTCAAGATGCTCCAAGTCGGCGGGCCAAAAGTGGTTGAGAAGCTGAAGGCGTCGATCAGCAGAAAACATTTGGATGGGTACAGCTCGAAAGGAGCAAACCTGTTGAAGGCACAATTGGACGGAAAATCCACCAAGCATTGATTTTTTTTAATTCTAAAGGCCTTTTTTCTCTTATACATACCCCCTTAATACCCATCTTCGTTGTTCTCGTTATATTGTTTTGTTGATTCTTCTTCTTGTTTTACTCTCTATTTTGTGTTAATTTTTTTTGTTGGAGAATTGATAATAAGTTTTATTATCATACATCTAGACTAGATATTTTAAATGCATTGGGTTTCAGTTACTGAGCTAATTG</canonical>
            <polymorphic>AGTCGAAATTCGTCGCTGCTTGCCTTGAAACCACATGTAAGTTGTTTTATATTTTTTTACTGCGTCAAATTGTGTCAAAGAAGGATAAAATTCGGGAAGTCGCTTCTCAAATATTTTTTTTAATTCCCGGCAAAACTGAAAACTACGAAGAGTTGGCAGTTTTTCTGTAATTTTTCATTCGATTCTTGGGAAATTTTCAGACCCGTTTAGGTTTTTCAGCCATTTTCAAAGATTTTCAGTTTTGTCGACCTTCTAGTAGGTTCCAGATGCGATTTTCAAAGTTGTTTGAATTTTTCTTTGTTGCTATTTGAAACTACATAATTTTCTATACATTTTTATTCGAAAAAAGTTGAATTGCTCCAATTTTCAGCCAAATTCGATTTGTTCGACAGACAAGTCCCATCAGACGGTCGCAAGGCGTGCAATCAAGCTCTCGTTGAGCTAGCCAAAAAGGATTTTGTGCCAATGGACCAAGAAGGATTCCACATCATCGAACATCWGTCTGGAAACTTTGTCCTTATGGCTATCATGCGTTGCGATACGGCTCTGCCAGAAGACGAGCGAGTATCGGTGGCGTTGGCAGAAGGGCTCACGAAACAACAGCTTGGCGGCTGGGTGACATGCAACAGAGGTTGCCATGTTCTTCTCAAGATGCTCCAAGTCGGCGGGCCAAAAGTGGTTGAGAAGCTGAAGGCGTCGATCAGCAGAAAACATTTGGATGGGTACAGCTCGAAAGGAGCAAACCTGTTGAAGGCACAATTGGACGGAAAATCCACCAAGCATTGATTTTTTTTAATTCTAAAGGCCTTTTTTCTCTTATACATACCCCCTTAATACCCATCTTCGTTGTTCTCGTTATATTGTTTTGTTGATTCTTCTTCTTGTTTTACTCTCTATTTTGTGTTAATTTTTTTTGTTGGAGAATTGATAATAAGTTTTATTATCATACATCTAGACTAGATATTTTAAATGCATTGGGTTTCAGTTACTGAGCTAATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCTAGCCAAAAAGGATTT</pcr_primer_p1>
		<pcr_primer_p2>TTCAGCTTCTCAACCACTTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GAGCTAGCCAAAAAGGATTTTGTGCCAATGGACCAAGAAGGATTCCACATCATCGAACATCAGTCTGGAAACTTTGTCCTTATGGCTATCATGCGTTGCGATACGGCTCTGCCAGAAGACGAGCGAGTATCGGTGGCGTTGGCAGAAGGGCTCACGAAACAACAGCTTGGCGGCTGGGTGACATGCAACAGAGGTTGCCATGTTCTTCTCAAGATGCTCCAAGTCGGCGGGCCAAAAGTGGTTGAGAAGCTGAA</canonical_amplicon>
		<polymorphic_amplicon>GAGCTAGCCAAAAAGGATTTTGTGCCAATGGACCAAGAAGGATTCCACATCATCGAACATCWGTCTGGAAACTTTGTCCTTATGGCTATCATGCGTTGCGATACGGCTCTGCCAGAAGACGAGCGAGTATCGGTGGCGTTGGCAGAAGGGCTCACGAAACAACAGCTTGGCGGCTGGGTGACATGCAACAGAGGTTGCCATGTTCTTCTCAAGATGCTCCAAGTCGGCGGGCCAAAAGTGGTTGAGAAGCTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13173</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>92380</contig_pos>
        <strand>+</strand>
        <context>CAATCAAGCT[C/G]TCGTTGAGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGTTCGACAGACAAGTCCCATCAGACGGTCGCAAGGCGTGCAATCAAGCT</left_flank>
        <right_flank>TCGTTGAGCTAGCCAAAAAGGATTTTGTGCCAATGGACCAAGAAGGATTC</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAATCACGGAGAATCTATATCCATACTTGGCTGCTAACTTTGAAGAGCTTGTCTTCGAAGCCAACAAGTCGAAATTCGTCGCTGCTTGCCTTGAAACCACATGTAAGTTGTTTTATATTTTTTTACTGCGTCAAATTGTGTCAAAGAAGGATAAAATTCGGGAAGTCGCTTCTCAAATATTTTTTTTAATTCCCGGCAAAACTGAAAACTACGAAGAGTTGGCAGTTTTTCTGTAATTTTTCATTCGATTCTTGGGAAATTTTCAGACCCGTTTAGGTTTTTCAGCCATTTTCAAAGATTTTCAGTTTTGTCGACCTTCTAGTAGGTTCCAGATGCGATTTTCAAAGTTGTTTGAATTTTTCTTTGTTGCTATTTGAAACTACATAATTTTCTATACATTTTTATTCGAAAAAAGTTGAATTGCTCCAATTTTCAGCCAAATTCGATTTGTTCGACAGACAAGTCCCATCAGACGGTCGCAAGGCGTGCAATCAAGCTCTCGTTGAGCTAGCCAAAAAGGATTTTGTGCCAATGGACCAAGAAGGATTCCACATCATCGAACATCAGTCTGGAAACTTTGTCCTTATGGCTATCATGCGTTGCGATACGGCTCTGCCAGAAGACGAGCGAGTATCGGTGGCGTTGGCAGAAGGGCTCACGAAACAACAGCTTGGCGGCTGGGTGACATGCAACAGAGGTTGCCATGTTCTTCTCAAGATGCTCCAAGTCGGCGGGCCAAAAGTGGTTGAGAAGCTGAAGGCGTCGATCAGCAGAAAACATTTGGATGGGTACAGCTCGAAAGGAGCAAACCTGTTGAAGGCACAATTGGACGGAAAATCCACCAAGCATTGATTTTTTTTAATTCTAAAGGCCTTTTTTCTCTTATACATACCCCCTTAATACCCATCTTCGTTGTTCTCGTTATATTGTTTTGTTGATTCTTCTTCTTGTTTTACTCTCTATTTTGTGTTAATTTTTTTTGTTGGAGAATTGATAATA</canonical>
            <polymorphic>GGAATCACGGAGAATCTATATCCATACTTGGCTGCTAACTTTGAAGAGCTTGTCTTCGAAGCCAACAAGTCGAAATTCGTCGCTGCTTGCCTTGAAACCACATGTAAGTTGTTTTATATTTTTTTACTGCGTCAAATTGTGTCAAAGAAGGATAAAATTCGGGAAGTCGCTTCTCAAATATTTTTTTTAATTCCCGGCAAAACTGAAAACTACGAAGAGTTGGCAGTTTTTCTGTAATTTTTCATTCGATTCTTGGGAAATTTTCAGACCCGTTTAGGTTTTTCAGCCATTTTCAAAGATTTTCAGTTTTGTCGACCTTCTAGTAGGTTCCAGATGCGATTTTCAAAGTTGTTTGAATTTTTCTTTGTTGCTATTTGAAACTACATAATTTTCTATACATTTTTATTCGAAAAAAGTTGAATTGCTCCAATTTTCAGCCAAATTCGATTTGTTCGACAGACAAGTCCCATCAGACGGTCGCAAGGCGTGCAATCAAGCTSTCGTTGAGCTAGCCAAAAAGGATTTTGTGCCAATGGACCAAGAAGGATTCCACATCATCGAACATCAGTCTGGAAACTTTGTCCTTATGGCTATCATGCGTTGCGATACGGCTCTGCCAGAAGACGAGCGAGTATCGGTGGCGTTGGCAGAAGGGCTCACGAAACAACAGCTTGGCGGCTGGGTGACATGCAACAGAGGTTGCCATGTTCTTCTCAAGATGCTCCAAGTCGGCGGGCCAAAAGTGGTTGAGAAGCTGAAGGCGTCGATCAGCAGAAAACATTTGGATGGGTACAGCTCGAAAGGAGCAAACCTGTTGAAGGCACAATTGGACGGAAAATCCACCAAGCATTGATTTTTTTTAATTCTAAAGGCCTTTTTTCTCTTATACATACCCCCTTAATACCCATCTTCGTTGTTCTCGTTATATTGTTTTGTTGATTCTTCTTCTTGTTTTACTCTCTATTTTGTGTTAATTTTTTTTGTTGGAGAATTGATAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAAGTTGTTTGAATTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CATAAGGACAAAGTTTCCAGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAAGTTGTTTGAATTTTTCTTTGTTGCTATTTGAAACTACATAATTTTCTATACATTTTTATTCGAAAAAAGTTGAATTGCTCCAATTTTCAGCCAAATTCGATTTGTTCGACAGACAAGTCCCATCAGACGGTCGCAAGGCGTGCAATCAAGCTCTCGTTGAGCTAGCCAAAAAGGATTTTGTGCCAATGGACCAAGAAGGATTCCACATCATCGAACATCAGTCTGGAAACTTTGTCCTTATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAAGTTGTTTGAATTTTTCTTTGTTGCTATTTGAAACTACATAATTTTCTATACATTTTTATTCGAAAAAAGTTGAATTGCTCCAATTTTCAGCCAAATTCGATTTGTTCGACAGACAAGTCCCATCAGACGGTCGCAAGGCGTGCAATCAAGCTSTCGTTGAGCTAGCCAAAAAGGATTTTGTGCCAATGGACCAAGAAGGATTCCACATCATCGAACATCAGTCTGGAAACTTTGTCCTTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13174</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>120978</contig_pos>
        <strand></strand>
        <context>TTAACCGCCA[A/G]TRAGCCGCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATATCTATTACAGGAACCGAGATAATTTTGATCGAATAATTAACCGCCA</left_flank>
        <right_flank>TGAGCCGCTGACGGCTGAAAAGTTATTCTATTGATTTTTTGTGTTGTCCA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAGACAACACCACTCTGTTCCCTTATAAAAAAGGAATCCCTACAATTATGTTTCTGACAAAATGCTAAACATTTTGAAGATGTTATCACCGGCTCAGTGCCTTGCCATATATGGCGGGTCCACACTTTTGGCGTACATTGAGACGTCAAAGTTCGAGAAGAATCATCATGTTCTGTTGAGTGCTCCATTGGTTATTCTGGCCATGTTGTCATTGGCGACGACGATGAATCCAAAGTAAGTTTTTAGTTTTAGGAAAGTTTAGAAATTGAGGTTTCGAAGTTAATTAAACTGAAGCGTAATTACCGTACTTGTTCTAATAGAAGCCCTCCGGAACCGTCAACTTTGAACTCAATTATCTCAGTTCATACAAGAGCTATCAAAAATAGGTCAACTGTTAAAATGTTTGCAACATTATGATAAACAAAATTATCTGTTGACAAATTTTTTATATCTATTACAGGAACCGAGATAATTTTGATCGAATAATTAACCGCCAATGAGCCGCTGACGGCTGAAAAGTTATTCTATTGATTTTTTGTGTTGTCCATCTGCAAAATCAAAATTTGCTTTTAAAATTTGGTCCCTTTCTGAAAAATGAAAACTTTGAAAAAGGATTTTTTTTGGGTTTCATAAAACAGACCATTAAACAGAAATTGGAAAACTTCCTAGGCAACATCAAAAATGTATCAACTGATAAACTATTTATCATCTATATAAGCTCAAAGTAGGCGGTCCAGGGTGCCTTCTATTTAGCCTGTACTTTCGCTTTGAGCTCAATTATCTTAGTTCCTATGAGAGATATCAAAAATCTGTCATATGACAAAATATTGGTGAAATTATGATCAACAATTTATTAGTTGACAGTTTTTTGATATCTTTTGCATTTACCGAGATATTTAAGCTCAAGGTGTTCTTCAAAATTATTGCTTCAGAGCTCGATTCGCCACAGCAATGTCCTTCTTGATGTCTGCCATTGCCACATACTTCCAATCGGTGA</canonical>
            <polymorphic>TTAAAGACAACACCACTCTGTTCCCTTATAAAAAAGGAATCCCTACAATTATGTTTCTGACAAAATGCTAAACATTTTGAAGATGTTATCACCGGCTCAGTGCCTTGCCATATATGGCGGGTCCACACTTTTGGCGTACATTGAGACGTCAAAGTTCGAGAAGAATCATCATGTTCTGTTGAGTGCTCCATTGGTTATTCTGGCCATGTTGTCATTGGCGACGACGATGAATCCAAAGTAAGTTTTTAGTTTTAGGAAAGTTTAGAAATTGAGGTTTCGAAGTTAATTAAACTGAAGCGTAATTACCGTACTTGTTCTAATAGAAGCCCTCCGGAACCGTCAACTTTGAACTCAATTATCTCAGTTCATACAAGAGCTATCAAAAATAGGTCAACTGTTAAAATGTTTGCAACATTATGATAAACAAAATTATCTGTTGACAAATTTTTTATATCTATTACAGGAACCGAGATAATTTTGATCGAATAATTAACCGCCARTGAGCCGCTGACGGCTGAAAAGTTATTCTATTGATTTTTTGTGTTGTCCATCTGCAAAATCAAAATTTGCTTTTAAAATTTGGTCCCTTTCTGAAAAATGAAAACTTTGAAAAAGGATTTTTTTTGGGTTTCATAAAACAGACCATTAAACAGAAATTGGAAAACTTCCTAGGCAACATCAAAAATGTATCAACTGATAAACTATTTATCATCTATATAAGCTCAAAGTAGGCGGTCCAGGGTGCCTTCTATTTAGCCTGTACTTTCGCTTTGAGCTCAATTATCTTAGTTCCTATGAGAGATATCAAAAATCTGTCATATGACAAAATATTGGTGAAATTATGATCAACAATTTATTAGTTGACAGTTTTTTGATATCTTTTGCATTTACCGAGATATTTAAGCTCAAGGTGTTCTTCAAAATTATTGCTTCAGAGCTCGATTCGCCACAGCAATGTCCTTCTTGATGTCTGCCATTGCCACATACTTCCAATCGGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATTGAGGTTTCGAAGTTAAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGCAGATGGACAACAC</pcr_primer_p2>
		<pcr_amplicon_size>296</pcr_amplicon_size>
		<canonical_amplicon>GAAATTGAGGTTTCGAAGTTAATTAAACTGAAGCGTAATTACCGTACTTGTTCTAATAGAAGCCCTCCGGAACCGTCAACTTTGAACTCAATTATCTCAGTTCATACAAGAGCTATCAAAAATAGGTCAACTGTTAAAATGTTTGCAACATTATGATAAACAAAATTATCTGTTGACAAATTTTTTATATCTATTACAGGAACCGAGATAATTTTGATCGAATAATTAACCGCCAATGAGCCGCTGACGGCTGAAAAGTTATTCTATTGATTTTTTGTGTTGTCCATCTGCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>GAAATTGAGGTTTCGAAGTTAATTAAACTGAAGCGTAATTACCGTACTTGTTCTAATAGAAGCCCTCCGGAACCGTCAACTTTGAACTCAATTATCTCAGTTCATACAAGAGCTATCAAAAATAGGTCAACTGTTAAAATGTTTGCAACATTATGATAAACAAAATTATCTGTTGACAAATTTTTTATATCTATTACAGGAACCGAGATAATTTTGATCGAATAATTAACCGCCARTGAGCCGCTGACGGCTGAAAAGTTATTCTATTGATTTTTTGTGTTGTCCATCTGCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13175</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>120980</contig_pos>
        <strand></strand>
        <context>AACCGCCART[G/A]AGCCGCTGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TATCTATTACAGGAACCGAGATAATTTTGATCGAATAATTAACCGCCAAT</left_flank>
        <right_flank>AGCCGCTGACGGCTGAAAAGTTATTCTATTGATTTTTTGTGTTGTCCATC</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGACAACACCACTCTGTTCCCTTATAAAAAAGGAATCCCTACAATTATGTTTCTGACAAAATGCTAAACATTTTGAAGATGTTATCACCGGCTCAGTGCCTTGCCATATATGGCGGGTCCACACTTTTGGCGTACATTGAGACGTCAAAGTTCGAGAAGAATCATCATGTTCTGTTGAGTGCTCCATTGGTTATTCTGGCCATGTTGTCATTGGCGACGACGATGAATCCAAAGTAAGTTTTTAGTTTTAGGAAAGTTTAGAAATTGAGGTTTCGAAGTTAATTAAACTGAAGCGTAATTACCGTACTTGTTCTAATAGAAGCCCTCCGGAACCGTCAACTTTGAACTCAATTATCTCAGTTCATACAAGAGCTATCAAAAATAGGTCAACTGTTAAAATGTTTGCAACATTATGATAAACAAAATTATCTGTTGACAAATTTTTTATATCTATTACAGGAACCGAGATAATTTTGATCGAATAATTAACCGCCAATGAGCCGCTGACGGCTGAAAAGTTATTCTATTGATTTTTTGTGTTGTCCATCTGCAAAATCAAAATTTGCTTTTAAAATTTGGTCCCTTTCTGAAAAATGAAAACTTTGAAAAAGGATTTTTTTTGGGTTTCATAAAACAGACCATTAAACAGAAATTGGAAAACTTCCTAGGCAACATCAAAAATGTATCAACTGATAAACTATTTATCATCTATATAAGCTCAAAGTAGGCGGTCCAGGGTGCCTTCTATTTAGCCTGTACTTTCGCTTTGAGCTCAATTATCTTAGTTCCTATGAGAGATATCAAAAATCTGTCATATGACAAAATATTGGTGAAATTATGATCAACAATTTATTAGTTGACAGTTTTTTGATATCTTTTGCATTTACCGAGATATTTAAGCTCAAGGTGTTCTTCAAAATTATTGCTTCAGAGCTCGATTCGCCACAGCAATGTCCTTCTTGATGTCTGCCATTGCCACATACTTCCAATCGGTGAAT</canonical>
            <polymorphic>AAAGACAACACCACTCTGTTCCCTTATAAAAAAGGAATCCCTACAATTATGTTTCTGACAAAATGCTAAACATTTTGAAGATGTTATCACCGGCTCAGTGCCTTGCCATATATGGCGGGTCCACACTTTTGGCGTACATTGAGACGTCAAAGTTCGAGAAGAATCATCATGTTCTGTTGAGTGCTCCATTGGTTATTCTGGCCATGTTGTCATTGGCGACGACGATGAATCCAAAGTAAGTTTTTAGTTTTAGGAAAGTTTAGAAATTGAGGTTTCGAAGTTAATTAAACTGAAGCGTAATTACCGTACTTGTTCTAATAGAAGCCCTCCGGAACCGTCAACTTTGAACTCAATTATCTCAGTTCATACAAGAGCTATCAAAAATAGGTCAACTGTTAAAATGTTTGCAACATTATGATAAACAAAATTATCTGTTGACAAATTTTTTATATCTATTACAGGAACCGAGATAATTTTGATCGAATAATTAACCGCCAATRAGCCGCTGACGGCTGAAAAGTTATTCTATTGATTTTTTGTGTTGTCCATCTGCAAAATCAAAATTTGCTTTTAAAATTTGGTCCCTTTCTGAAAAATGAAAACTTTGAAAAAGGATTTTTTTTGGGTTTCATAAAACAGACCATTAAACAGAAATTGGAAAACTTCCTAGGCAACATCAAAAATGTATCAACTGATAAACTATTTATCATCTATATAAGCTCAAAGTAGGCGGTCCAGGGTGCCTTCTATTTAGCCTGTACTTTCGCTTTGAGCTCAATTATCTTAGTTCCTATGAGAGATATCAAAAATCTGTCATATGACAAAATATTGGTGAAATTATGATCAACAATTTATTAGTTGACAGTTTTTTGATATCTTTTGCATTTACCGAGATATTTAAGCTCAAGGTGTTCTTCAAAATTATTGCTTCAGAGCTCGATTCGCCACAGCAATGTCCTTCTTGATGTCTGCCATTGCCACATACTTCCAATCGGTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATTGAGGTTTCGAAGTTAAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGCAGATGGACAACAC</pcr_primer_p2>
		<pcr_amplicon_size>296</pcr_amplicon_size>
		<canonical_amplicon>GAAATTGAGGTTTCGAAGTTAATTAAACTGAAGCGTAATTACCGTACTTGTTCTAATAGAAGCCCTCCGGAACCGTCAACTTTGAACTCAATTATCTCAGTTCATACAAGAGCTATCAAAAATAGGTCAACTGTTAAAATGTTTGCAACATTATGATAAACAAAATTATCTGTTGACAAATTTTTTATATCTATTACAGGAACCGAGATAATTTTGATCGAATAATTAACCGCCAATGAGCCGCTGACGGCTGAAAAGTTATTCTATTGATTTTTTGTGTTGTCCATCTGCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>GAAATTGAGGTTTCGAAGTTAATTAAACTGAAGCGTAATTACCGTACTTGTTCTAATAGAAGCCCTCCGGAACCGTCAACTTTGAACTCAATTATCTCAGTTCATACAAGAGCTATCAAAAATAGGTCAACTGTTAAAATGTTTGCAACATTATGATAAACAAAATTATCTGTTGACAAATTTTTTATATCTATTACAGGAACCGAGATAATTTTGATCGAATAATTAACCGCCAATRAGCCGCTGACGGCTGAAAAGTTATTCTATTGATTTTTTGTGTTGTCCATCTGCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13176</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>121069</contig_pos>
        <strand></strand>
        <context>TGGTCCCTTT[C/T]TGAAAAATGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGTTGTCCATCTGCAAAATCAAAATTTGCTTTTAAAATTTGGTCCCTTT</left_flank>
        <right_flank>TGAAAAATGAAAACTTTGAAAAAGGATTTTTTTTGGGTTTCATAAAACAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGGCTCAGTGCCTTGCCATATATGGCGGGTCCACACTTTTGGCGTACATTGAGACGTCAAAGTTCGAGAAGAATCATCATGTTCTGTTGAGTGCTCCATTGGTTATTCTGGCCATGTTGTCATTGGCGACGACGATGAATCCAAAGTAAGTTTTTAGTTTTAGGAAAGTTTAGAAATTGAGGTTTCGAAGTTAATTAAACTGAAGCGTAATTACCGTACTTGTTCTAATAGAAGCCCTCCGGAACCGTCAACTTTGAACTCAATTATCTCAGTTCATACAAGAGCTATCAAAAATAGGTCAACTGTTAAAATGTTTGCAACATTATGATAAACAAAATTATCTGTTGACAAATTTTTTATATCTATTACAGGAACCGAGATAATTTTGATCGAATAATTAACCGCCAATGAGCCGCTGACGGCTGAAAAGTTATTCTATTGATTTTTTGTGTTGTCCATCTGCAAAATCAAAATTTGCTTTTAAAATTTGGTCCCTTTCTGAAAAATGAAAACTTTGAAAAAGGATTTTTTTTGGGTTTCATAAAACAGACCATTAAACAGAAATTGGAAAACTTCCTAGGCAACATCAAAAATGTATCAACTGATAAACTATTTATCATCTATATAAGCTCAAAGTAGGCGGTCCAGGGTGCCTTCTATTTAGCCTGTACTTTCGCTTTGAGCTCAATTATCTTAGTTCCTATGAGAGATATCAAAAATCTGTCATATGACAAAATATTGGTGAAATTATGATCAACAATTTATTAGTTGACAGTTTTTTGATATCTTTTGCATTTACCGAGATATTTAAGCTCAAGGTGTTCTTCAAAATTATTGCTTCAGAGCTCGATTCGCCACAGCAATGTCCTTCTTGATGTCTGCCATTGCCACATACTTCCAATCGGTGAATCGGACAGGACCAACATCGGCGATTTTCTACACTATTGCCAACGTCTTCTACTACTTCTCATATAGGTGAGTTGCATCTGAATCTCATTT</canonical>
            <polymorphic>CCGGCTCAGTGCCTTGCCATATATGGCGGGTCCACACTTTTGGCGTACATTGAGACGTCAAAGTTCGAGAAGAATCATCATGTTCTGTTGAGTGCTCCATTGGTTATTCTGGCCATGTTGTCATTGGCGACGACGATGAATCCAAAGTAAGTTTTTAGTTTTAGGAAAGTTTAGAAATTGAGGTTTCGAAGTTAATTAAACTGAAGCGTAATTACCGTACTTGTTCTAATAGAAGCCCTCCGGAACCGTCAACTTTGAACTCAATTATCTCAGTTCATACAAGAGCTATCAAAAATAGGTCAACTGTTAAAATGTTTGCAACATTATGATAAACAAAATTATCTGTTGACAAATTTTTTATATCTATTACAGGAACCGAGATAATTTTGATCGAATAATTAACCGCCAATGAGCCGCTGACGGCTGAAAAGTTATTCTATTGATTTTTTGTGTTGTCCATCTGCAAAATCAAAATTTGCTTTTAAAATTTGGTCCCTTTYTGAAAAATGAAAACTTTGAAAAAGGATTTTTTTTGGGTTTCATAAAACAGACCATTAAACAGAAATTGGAAAACTTCCTAGGCAACATCAAAAATGTATCAACTGATAAACTATTTATCATCTATATAAGCTCAAAGTAGGCGGTCCAGGGTGCCTTCTATTTAGCCTGTACTTTCGCTTTGAGCTCAATTATCTTAGTTCCTATGAGAGATATCAAAAATCTGTCATATGACAAAATATTGGTGAAATTATGATCAACAATTTATTAGTTGACAGTTTTTTGATATCTTTTGCATTTACCGAGATATTTAAGCTCAAGGTGTTCTTCAAAATTATTGCTTCAGAGCTCGATTCGCCACAGCAATGTCCTTCTTGATGTCTGCCATTGCCACATACTTCCAATCGGTGAATCGGACAGGACCAACATCGGCGATTTTCTACACTATTGCCAACGTCTTCTACTACTTCTCATATAGGTGAGTTGCATCTGAATCTCATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>501 342 76 70 11</canonical_bands>
                <polymorphic_bands>843 76 70 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGTTGTCCATCTGCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CGAAAGTACAGGCTAAATAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>GTGTTGTCCATCTGCAAAATCAAAATTTGCTTTTAAAATTTGGTCCCTTTCTGAAAAATGAAAACTTTGAAAAAGGATTTTTTTTGGGTTTCATAAAACAGACCATTAAACAGAAATTGGAAAACTTCCTAGGCAACATCAAAAATGTATCAACTGATAAACTATTTATCATCTATATAAGCTCAAAGTAGGCGGTCCAGGGTGCCTTCTATTTAGCCTGTACTTTCG</canonical_amplicon>
		<polymorphic_amplicon>GTGTTGTCCATCTGCAAAATCAAAATTTGCTTTTAAAATTTGGTCCCTTTYTGAAAAATGAAAACTTTGAAAAAGGATTTTTTTTGGGTTTCATAAAACAGACCATTAAACAGAAATTGGAAAACTTCCTAGGCAACATCAAAAATGTATCAACTGATAAACTATTTATCATCTATATAAGCTCAAAGTAGGCGGTCCAGGGTGCCTTCTATTTAGCCTGTACTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13178</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>125003</contig_pos>
        <strand>+</strand>
        <context>CTTGAAAATC[G/T]CTCTTCTATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACCAAACCCCTTCAGTAACCCAAACAACTAACCTGGTTTGCTTGAAAATC</left_flank>
        <right_flank>CTCTTCTATTCTTCAAAAAGTCTCTAATAGCCTCACGACGCTTGGCAGCA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATGAATACCAGGTCATTTTTTAGACATTTACCGTCGTTGCCTAGAAAAATCAATTTGCAAAAGTTAGGTCATCTCTTTAAATTGGCCTAGAAAGCACACCAGAGGCATGTCAGGGCGGATCTGAGCCATTTTGTCATAGTGGCCTAGAAAATTCAACTTGCAAAAATTCGGCAACAATGTTGAAATTGCCTAAAAACAGACCAGAGGCGTGTCAGGCTATTTCTGGGTCAGTTTGTCATAGTGGCCTAGAAAACTCGACTTGAAAAAGTTCGGCCACCATGTTAACATGACCGAGAAAACACACCAGATGAATATCAGACCAGAAGTTAGGCCACCGTGTTAAAATGTGGTCGTTTCGAGAAATTCTTCAAAGAATTTCTGGAAGTTTATTTTCTTGTAGTTTCTCGAAAGGATATACTGGTCATTCCCCAAAATGTGTTTTTCACTACCAAACCCCTTCAGTAACCCAAACAACTAACCTGGTTTGCTTGAAAATCGCTCTTCTATTCTTCAAAAAGTCTCTAATAGCCTCACGACGCTTGGCAGCAAAAGCAGCCTTCTCCTTATCAGTTCCGCGATTTGGGTAGGCTTTTAAAGCTTCCATGAAATTCTTCGAAAGCTCTGAATCCTTCTTCTTAGCGGCAGCGAGCGACTGTTGCTCTTTTTTCTCAGCAACTGGAAGAGATCTGATGAGTGTGTCTCTTTTGGCAACCTTCAAATGGTTGTATCTTTCACCGAGAGCGCTGGAAGTAACAAAATATTTTATTTGGTGGATTCAAGAATAGCTACTTGAGAAGTGCGTCATTTTGAGCACGCTTGTCTCCCTCTCCATTCTTGAAAACAATGATTTTTCTCTTATCCTCACGATGCTTGGCTTCTTGTGGGCTGGAACATTTTATTGATTTTGTAAATGTGCTCCATCGAACTTACTGTGGTGCAGCCTTCCCATTCTTAAGAGTAATCATTAGTCTAGTTTTGTCCTCCCGATGTTTCACTGG</canonical>
            <polymorphic>AGATGAATACCAGGTCATTTTTTAGACATTTACCGTCGTTGCCTAGAAAAATCAATTTGCAAAAGTTAGGTCATCTCTTTAAATTGGCCTAGAAAGCACACCAGAGGCATGTCAGGGCGGATCTGAGCCATTTTGTCATAGTGGCCTAGAAAATTCAACTTGCAAAAATTCGGCAACAATGTTGAAATTGCCTAAAAACAGACCAGAGGCGTGTCAGGCTATTTCTGGGTCAGTTTGTCATAGTGGCCTAGAAAACTCGACTTGAAAAAGTTCGGCCACCATGTTAACATGACCGAGAAAACACACCAGATGAATATCAGACCAGAAGTTAGGCCACCGTGTTAAAATGTGGTCGTTTCGAGAAATTCTTCAAAGAATTTCTGGAAGTTTATTTTCTTGTAGTTTCTCGAAAGGATATACTGGTCATTCCCCAAAATGTGTTTTTCACTACCAAACCCCTTCAGTAACCCAAACAACTAACCTGGTTTGCTTGAAAATCKCTCTTCTATTCTTCAAAAAGTCTCTAATAGCCTCACGACGCTTGGCAGCAAAAGCAGCCTTCTCCTTATCAGTTCCGCGATTTGGGTAGGCTTTTAAAGCTTCCATGAAATTCTTCGAAAGCTCTGAATCCTTCTTCTTAGCGGCAGCGAGCGACTGTTGCTCTTTTTTCTCAGCAACTGGAAGAGATCTGATGAGTGTGTCTCTTTTGGCAACCTTCAAATGGTTGTATCTTTCACCGAGAGCGCTGGAAGTAACAAAATATTTTATTTGGTGGATTCAAGAATAGCTACTTGAGAAGTGCGTCATTTTGAGCACGCTTGTCTCCCTCTCCATTCTTGAAAACAATGATTTTTCTCTTATCCTCACGATGCTTGGCTTCTTGTGGGCTGGAACATTTTATTGATTTTGTAAATGTGCTCCATCGAACTTACTGTGGTGCAGCCTTCCCATTCTTAAGAGTAATCATTAGTCTAGTTTTGTCCTCCCGATGTTTCACTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAAAGAATTTCTGGAAGTTTA</pcr_primer_p1>
		<pcr_primer_p2>GAAGAATTTCATGGAAGCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTCAAAGAATTTCTGGAAGTTTATTTTCTTGTAGTTTCTCGAAAGGATATACTGGTCATTCCCCAAAATGTGTTTTTCACTACCAAACCCCTTCAGTAACCCAAACAACTAACCTGGTTTGCTTGAAAATCGCTCTTCTATTCTTCAAAAAGTCTCTAATAGCCTCACGACGCTTGGCAGCAAAAGCAGCCTTCTCCTTATCAGTTCCGCGATTTGGGTAGGCTTTTAAAGCTTCCATGAAATTCTTC</canonical_amplicon>
		<polymorphic_amplicon>TTCAAAGAATTTCTGGAAGTTTATTTTCTTGTAGTTTCTCGAAAGGATATACTGGTCATTCCCCAAAATGTGTTTTTCACTACCAAACCCCTTCAGTAACCCAAACAACTAACCTGGTTTGCTTGAAAATCKCTCTTCTATTCTTCAAAAAGTCTCTAATAGCCTCACGACGCTTGGCAGCAAAAGCAGCCTTCTCCTTATCAGTTCCGCGATTTGGGTAGGCTTTTAAAGCTTCCATGAAATTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13204</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>127409</contig_pos>
        <strand></strand>
        <context>CTGCAAAAAA[A/T]TTGGGTGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTAGATTTGATCCATGATTTCGGTGGTTGATTGTTTGCAGCTGCAAAAAA</left_flank>
        <right_flank>TTGGGTGAAAAAAATATACATTGGTTTGCCAGTAAACGTCAAAAATGTTC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGCATAGGGTAAGCTTAGGAGCTGCAAATCTGAAATTTAACCTGATAAGGGTGTCAGCATAGGAAACAGCTAAAACTGTTGAGAAAATAAATAGTACTGTGATATTCTGAAATCTCATTTTTCAATTCGATGTCCAAATGGGCTCTCTGGATCCCCTTATATTGGGTTTCTTTGATTCATGATCACATTCATTATGAAAATTTAAATCAATGAATTATATATGATTACACAGTTAATATGATAATGAGTGTGGGTTGGAAATTTTTGCAAAAAAGGGAAGGAACAAAGCACAGAAAAGTGAAAAATTGGGAGACTTGGCACCATAAACTGGGAAAGGAAAAAATTGAAAATCTAGCGAAGGAGCAAGCGAATTGAGACATAAAATTGAGAAAATTCGGATTCAGATACAATTATTGACGTGCATGTCGTGAAGCTTATGACGACCCTCGTAGATTTGATCCATGATTTCGGTGGTTGATTGTTTGCAGCTGCAAAAAAATTGGGTGAAAAAAATATACATTGGTTTGCCAGTAAACGTCAAAAATGTTCAAAAGTTCAAAAAATCAAAAACTTTTGATTTTTTGAACATTTGATTTTTTGGACTTTAAATTTTGATCAAAATTATCTAGATTCTCGTGAAATATATCAAAAATTTGTCAACTAATAAACTATTTATCATATTATCACCTATATTTTATCAGTTGACAAATTTTTGGTATATCTCATGAGAGTCGTAACTGGACTCAATGTTGACGATTTGGGTGGGCATATTTTAAAGAAGTTTTGGTCGTAATTTCAAGATTATTTAAAACCAAATTTTGACTTGTTCTAGATTATTGTTGGCTTAGTTTTAGCACATTTGACCTAATATTAGCTGTTTCAAGATTATTTTCAGTTCATTTTCGACTATTTACAGATGATTTTTGAAATTCCATTTCCCCCCGTTTCTTGTTGAAATTCTGACTTTTGATTCTGACAATCTCAAACGGTCGGAAACAT</canonical>
            <polymorphic>GAGCATAGGGTAAGCTTAGGAGCTGCAAATCTGAAATTTAACCTGATAAGGGTGTCAGCATAGGAAACAGCTAAAACTGTTGAGAAAATAAATAGTACTGTGATATTCTGAAATCTCATTTTTCAATTCGATGTCCAAATGGGCTCTCTGGATCCCCTTATATTGGGTTTCTTTGATTCATGATCACATTCATTATGAAAATTTAAATCAATGAATTATATATGATTACACAGTTAATATGATAATGAGTGTGGGTTGGAAATTTTTGCAAAAAAGGGAAGGAACAAAGCACAGAAAAGTGAAAAATTGGGAGACTTGGCACCATAAACTGGGAAAGGAAAAAATTGAAAATCTAGCGAAGGAGCAAGCGAATTGAGACATAAAATTGAGAAAATTCGGATTCAGATACAATTATTGACGTGCATGTCGTGAAGCTTATGACGACCCTCGTAGATTTGATCCATGATTTCGGTGGTTGATTGTTTGCAGCTGCAAAAAAWTTGGGTGAAAAAAATATACATTGGTTTGCCAGTAAACGTCAAAAATGTTCAAAAGTTCAAAAAATCAAAAACTTTTGATTTTTTGAACATTTGATTTTTTGGACTTTAAATTTTGATCAAAATTATCTAGATTCTCGTGAAATATATCAAAAATTTGTCAACTAATAAACTATTTATCATATTATCACCTATATTTTATCAGTTGACAAATTTTTGGTATATCTCATGAGAGTCGTAACTGGACTCAATGTTGACGATTTGGGTGGGCATATTTTAAAGAAGTTTTGGTCGTAATTTCAAGATTATTTAAAACCAAATTTTGACTTGTTCTAGATTATTGTTGGCTTAGTTTTAGCACATTTGACCTAATATTAGCTGTTTCAAGATTATTTTCAGTTCATTTTCGACTATTTACAGATGATTTTTGAAATTCCATTTCCCCCCGTTTCTTGTTGAAATTCTGACTTTTGATTCTGACAATCTCAAACGGTCGGAAACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>113 110 90 89 84 75 57 47 44 44 38 34 31 28 28 23 17 14 13 12 9</canonical_bands>
                <polymorphic_bands>199 113 90 84 75 57 47 44 44 38 34 31 28 28 23 17 14 13 12 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACTTGGCACCATAAACTG</pcr_primer_p1>
		<pcr_primer_p2>TTGAACTTTTGAACATTTTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGACTTGGCACCATAAACTGGGAAAGGAAAAAATTGAAAATCTAGCGAAGGAGCAAGCGAATTGAGACATAAAATTGAGAAAATTCGGATTCAGATACAATTATTGACGTGCATGTCGTGAAGCTTATGACGACCCTCGTAGATTTGATCCATGATTTCGGTGGTTGATTGTTTGCAGCTGCAAAAAAATTGGGTGAAAAAAATATACATTGGTTTGCCAGTAAACGTCAAAAATGTTCAAAAGTTCAA</canonical_amplicon>
		<polymorphic_amplicon>AGACTTGGCACCATAAACTGGGAAAGGAAAAAATTGAAAATCTAGCGAAGGAGCAAGCGAATTGAGACATAAAATTGAGAAAATTCGGATTCAGATACAATTATTGACGTGCATGTCGTGAAGCTTATGACGACCCTCGTAGATTTGATCCATGATTTCGGTGGTTGATTGTTTGCAGCTGCAAAAAAWTTGGGTGAAAAAAATATACATTGGTTTGCCAGTAAACGTCAAAAATGTTCAAAAGTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13205</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>127253</contig_pos>
        <strand></strand>
        <context>AAAGGAAAAA[A/G]TTGAAAATCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAAGTGAAAAATTGGGAGACTTGGCACCATAAACTGGGAAAGGAAAAA</left_flank>
        <right_flank>TTGAAAATCTAGCGAAGGAGCAAGCGAATTGAGACATAAAATTGAGAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCTTTAAGTACACTTTGAGCTTATTTATCTCGGTTCCTATGAGAGATATCAAAATATTGTCGATTGATAAAATGTAGCTGATAACATGATAAATACTTTATCAGTTGGCACGTTTAAGATATCTCTTCTAAGAACGGAGAAAATTGAGCTCAAAGAGCATAGGGTAAGCTTAGGAGCTGCAAATCTGAAATTTAACCTGATAAGGGTGTCAGCATAGGAAACAGCTAAAACTGTTGAGAAAATAAATAGTACTGTGATATTCTGAAATCTCATTTTTCAATTCGATGTCCAAATGGGCTCTCTGGATCCCCTTATATTGGGTTTCTTTGATTCATGATCACATTCATTATGAAAATTTAAATCAATGAATTATATATGATTACACAGTTAATATGATAATGAGTGTGGGTTGGAAATTTTTGCAAAAAAGGGAAGGAACAAAGCACAGAAAAGTGAAAAATTGGGAGACTTGGCACCATAAACTGGGAAAGGAAAAAATTGAAAATCTAGCGAAGGAGCAAGCGAATTGAGACATAAAATTGAGAAAATTCGGATTCAGATACAATTATTGACGTGCATGTCGTGAAGCTTATGACGACCCTCGTAGATTTGATCCATGATTTCGGTGGTTGATTGTTTGCAGCTGCAAAAAAATTGGGTGAAAAAAATATACATTGGTTTGCCAGTAAACGTCAAAAATGTTCAAAAGTTCAAAAAATCAAAAACTTTTGATTTTTTGAACATTTGATTTTTTGGACTTTAAATTTTGATCAAAATTATCTAGATTCTCGTGAAATATATCAAAAATTTGTCAACTAATAAACTATTTATCATATTATCACCTATATTTTATCAGTTGACAAATTTTTGGTATATCTCATGAGAGTCGTAACTGGACTCAATGTTGACGATTTGGGTGGGCATATTTTAAAGAAGTTTTGGTCGTAATTTCAAGATTATTTAAAACCAAATTTTGACTTGTTCTAGATTATTGTTGG</canonical>
            <polymorphic>AAGCTTTAAGTACACTTTGAGCTTATTTATCTCGGTTCCTATGAGAGATATCAAAATATTGTCGATTGATAAAATGTAGCTGATAACATGATAAATACTTTATCAGTTGGCACGTTTAAGATATCTCTTCTAAGAACGGAGAAAATTGAGCTCAAAGAGCATAGGGTAAGCTTAGGAGCTGCAAATCTGAAATTTAACCTGATAAGGGTGTCAGCATAGGAAACAGCTAAAACTGTTGAGAAAATAAATAGTACTGTGATATTCTGAAATCTCATTTTTCAATTCGATGTCCAAATGGGCTCTCTGGATCCCCTTATATTGGGTTTCTTTGATTCATGATCACATTCATTATGAAAATTTAAATCAATGAATTATATATGATTACACAGTTAATATGATAATGAGTGTGGGTTGGAAATTTTTGCAAAAAAGGGAAGGAACAAAGCACAGAAAAGTGAAAAATTGGGAGACTTGGCACCATAAACTGGGAAAGGAAAAARTTGAAAATCTAGCGAAGGAGCAAGCGAATTGAGACATAAAATTGAGAAAATTCGGATTCAGATACAATTATTGACGTGCATGTCGTGAAGCTTATGACGACCCTCGTAGATTTGATCCATGATTTCGGTGGTTGATTGTTTGCAGCTGCAAAAAAATTGGGTGAAAAAAATATACATTGGTTTGCCAGTAAACGTCAAAAATGTTCAAAAGTTCAAAAAATCAAAAACTTTTGATTTTTTGAACATTTGATTTTTTGGACTTTAAATTTTGATCAAAATTATCTAGATTCTCGTGAAATATATCAAAAATTTGTCAACTAATAAACTATTTATCATATTATCACCTATATTTTATCAGTTGACAAATTTTTGGTATATCTCATGAGAGTCGTAACTGGACTCAATGTTGACGATTTGGGTGGGCATATTTTAAAGAAGTTTTGGTCGTAATTTCAAGATTATTTAAAACCAAATTTTGACTTGTTCTAGATTATTGTTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>143 110 90 89 84 75 57 47 47 44 38 31 29 28 23 17 14 13 12 9</canonical_bands>
                <polymorphic_bands>143 110 90 89 84 75 66 57 47 47 44 31 29 23 17 14 13 12 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTATATTGGGTTTCTTTGATT</pcr_primer_p1>
		<pcr_primer_p2>AATCCGAATTTTCTCAATTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCTTATATTGGGTTTCTTTGATTCATGATCACATTCATTATGAAAATTTAAATCAATGAATTATATATGATTACACAGTTAATATGATAATGAGTGTGGGTTGGAAATTTTTGCAAAAAAGGGAAGGAACAAAGCACAGAAAAGTGAAAAATTGGGAGACTTGGCACCATAAACTGGGAAAGGAAAAAATTGAAAATCTAGCGAAGGAGCAAGCGAATTGAGACATAAAATTGAGAAAATTCGGATT</canonical_amplicon>
		<polymorphic_amplicon>CCTTATATTGGGTTTCTTTGATTCATGATCACATTCATTATGAAAATTTAAATCAATGAATTATATATGATTACACAGTTAATATGATAATGAGTGTGGGTTGGAAATTTTTGCAAAAAAGGGAAGGAACAAAGCACAGAAAAGTGAAAAATTGGGAGACTTGGCACCATAAACTGGGAAAGGAAAAARTTGAAAATCTAGCGAAGGAGCAAGCGAATTGAGACATAAAATTGAGAAAATTCGGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13206</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>127187</contig_pos>
        <strand></strand>
        <context>GCAAAAAAGG[G/A]AAGGAACAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACACAGTTAATATGATAATGAGTGTGGGTTGGAAATTTTTGCAAAAAAGG</left_flank>
        <right_flank>AAGGAACAAAGCACAGAAAAGTGAAAAATTGGGAGACTTGGCACCATAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGTGAGCATTGATAAGCTCCTTCAAATGGTTTCTCCGAGCCTCTTGGACCGGGAGAGACCTGAAAAGCTTTAAGTACACTTTGAGCTTATTTATCTCGGTTCCTATGAGAGATATCAAAATATTGTCGATTGATAAAATGTAGCTGATAACATGATAAATACTTTATCAGTTGGCACGTTTAAGATATCTCTTCTAAGAACGGAGAAAATTGAGCTCAAAGAGCATAGGGTAAGCTTAGGAGCTGCAAATCTGAAATTTAACCTGATAAGGGTGTCAGCATAGGAAACAGCTAAAACTGTTGAGAAAATAAATAGTACTGTGATATTCTGAAATCTCATTTTTCAATTCGATGTCCAAATGGGCTCTCTGGATCCCCTTATATTGGGTTTCTTTGATTCATGATCACATTCATTATGAAAATTTAAATCAATGAATTATATATGATTACACAGTTAATATGATAATGAGTGTGGGTTGGAAATTTTTGCAAAAAAGGGAAGGAACAAAGCACAGAAAAGTGAAAAATTGGGAGACTTGGCACCATAAACTGGGAAAGGAAAAAATTGAAAATCTAGCGAAGGAGCAAGCGAATTGAGACATAAAATTGAGAAAATTCGGATTCAGATACAATTATTGACGTGCATGTCGTGAAGCTTATGACGACCCTCGTAGATTTGATCCATGATTTCGGTGGTTGATTGTTTGCAGCTGCAAAAAAATTGGGTGAAAAAAATATACATTGGTTTGCCAGTAAACGTCAAAAATGTTCAAAAGTTCAAAAAATCAAAAACTTTTGATTTTTTGAACATTTGATTTTTTGGACTTTAAATTTTGATCAAAATTATCTAGATTCTCGTGAAATATATCAAAAATTTGTCAACTAATAAACTATTTATCATATTATCACCTATATTTTATCAGTTGACAAATTTTTGGTATATCTCATGAGAGTCGTAACTGGACTCAATGTTGACGATTTGGGTGGGCATATTTTAAA</canonical>
            <polymorphic>CTTGTGAGCATTGATAAGCTCCTTCAAATGGTTTCTCCGAGCCTCTTGGACCGGGAGAGACCTGAAAAGCTTTAAGTACACTTTGAGCTTATTTATCTCGGTTCCTATGAGAGATATCAAAATATTGTCGATTGATAAAATGTAGCTGATAACATGATAAATACTTTATCAGTTGGCACGTTTAAGATATCTCTTCTAAGAACGGAGAAAATTGAGCTCAAAGAGCATAGGGTAAGCTTAGGAGCTGCAAATCTGAAATTTAACCTGATAAGGGTGTCAGCATAGGAAACAGCTAAAACTGTTGAGAAAATAAATAGTACTGTGATATTCTGAAATCTCATTTTTCAATTCGATGTCCAAATGGGCTCTCTGGATCCCCTTATATTGGGTTTCTTTGATTCATGATCACATTCATTATGAAAATTTAAATCAATGAATTATATATGATTACACAGTTAATATGATAATGAGTGTGGGTTGGAAATTTTTGCAAAAAAGGRAAGGAACAAAGCACAGAAAAGTGAAAAATTGGGAGACTTGGCACCATAAACTGGGAAAGGAAAAAATTGAAAATCTAGCGAAGGAGCAAGCGAATTGAGACATAAAATTGAGAAAATTCGGATTCAGATACAATTATTGACGTGCATGTCGTGAAGCTTATGACGACCCTCGTAGATTTGATCCATGATTTCGGTGGTTGATTGTTTGCAGCTGCAAAAAAATTGGGTGAAAAAAATATACATTGGTTTGCCAGTAAACGTCAAAAATGTTCAAAAGTTCAAAAAATCAAAAACTTTTGATTTTTTGAACATTTGATTTTTTGGACTTTAAATTTTGATCAAAATTATCTAGATTCTCGTGAAATATATCAAAAATTTGTCAACTAATAAACTATTTATCATATTATCACCTATATTTTATCAGTTGACAAATTTTTGGTATATCTCATGAGAGTCGTAACTGGACTCAATGTTGACGATTTGGGTGGGCATATTTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTATATTGGGTTTCTTTGATT</pcr_primer_p1>
		<pcr_primer_p2>AATCCGAATTTTCTCAATTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCTTATATTGGGTTTCTTTGATTCATGATCACATTCATTATGAAAATTTAAATCAATGAATTATATATGATTACACAGTTAATATGATAATGAGTGTGGGTTGGAAATTTTTGCAAAAAAGGGAAGGAACAAAGCACAGAAAAGTGAAAAATTGGGAGACTTGGCACCATAAACTGGGAAAGGAAAAAATTGAAAATCTAGCGAAGGAGCAAGCGAATTGAGACATAAAATTGAGAAAATTCGGATT</canonical_amplicon>
		<polymorphic_amplicon>CCTTATATTGGGTTTCTTTGATTCATGATCACATTCATTATGAAAATTTAAATCAATGAATTATATATGATTACACAGTTAATATGATAATGAGTGTGGGTTGGAAATTTTTGCAAAAAAGGRAAGGAACAAAGCACAGAAAAGTGAAAAATTGGGAGACTTGGCACCATAAACTGGGAAAGGAAAAAATTGAAAATCTAGCGAAGGAGCAAGCGAATTGAGACATAAAATTGAGAAAATTCGGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13207</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>127005</contig_pos>
        <strand></strand>
        <context>AAATAAATAG[T/G]ACTGTGATAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATAAGGGTGTCAGCATAGGAAACAGCTAAAACTGTTGAGAAAATAAATAG</left_flank>
        <right_flank>ACTGTGATATTCTGAAATCTCATTTTTCAATTCGATGTCCAAATGGGCTC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTAAATTTTCAACTCTTACTCTTGAATGGGCTGATCGAAAACTACAATAGATCTTTTCTTCTCAATCTCCTTTGGAGCCTCCTGCTCTTTAAAAACTATAATAGATCTGTCTTGTTTGATCTTTTTTGGCTCATTCTCATCAAATACAACAATCGTTCTTTTTTGTTCAGCAATTTTCTGCTTGTGAGCATTGATAAGCTCCTTCAAATGGTTTCTCCGAGCCTCTTGGACCGGGAGAGACCTGAAAAGCTTTAAGTACACTTTGAGCTTATTTATCTCGGTTCCTATGAGAGATATCAAAATATTGTCGATTGATAAAATGTAGCTGATAACATGATAAATACTTTATCAGTTGGCACGTTTAAGATATCTCTTCTAAGAACGGAGAAAATTGAGCTCAAAGAGCATAGGGTAAGCTTAGGAGCTGCAAATCTGAAATTTAACCTGATAAGGGTGTCAGCATAGGAAACAGCTAAAACTGTTGAGAAAATAAATAGTACTGTGATATTCTGAAATCTCATTTTTCAATTCGATGTCCAAATGGGCTCTCTGGATCCCCTTATATTGGGTTTCTTTGATTCATGATCACATTCATTATGAAAATTTAAATCAATGAATTATATATGATTACACAGTTAATATGATAATGAGTGTGGGTTGGAAATTTTTGCAAAAAAGGGAAGGAACAAAGCACAGAAAAGTGAAAAATTGGGAGACTTGGCACCATAAACTGGGAAAGGAAAAAATTGAAAATCTAGCGAAGGAGCAAGCGAATTGAGACATAAAATTGAGAAAATTCGGATTCAGATACAATTATTGACGTGCATGTCGTGAAGCTTATGACGACCCTCGTAGATTTGATCCATGATTTCGGTGGTTGATTGTTTGCAGCTGCAAAAAAATTGGGTGAAAAAAATATACATTGGTTTGCCAGTAAACGTCAAAAATGTTCAAAAGTTCAAAAAATCAAAAACTTTTGATTTTTTGAACATTTGATT</canonical>
            <polymorphic>TTCTAAATTTTCAACTCTTACTCTTGAATGGGCTGATCGAAAACTACAATAGATCTTTTCTTCTCAATCTCCTTTGGAGCCTCCTGCTCTTTAAAAACTATAATAGATCTGTCTTGTTTGATCTTTTTTGGCTCATTCTCATCAAATACAACAATCGTTCTTTTTTGTTCAGCAATTTTCTGCTTGTGAGCATTGATAAGCTCCTTCAAATGGTTTCTCCGAGCCTCTTGGACCGGGAGAGACCTGAAAAGCTTTAAGTACACTTTGAGCTTATTTATCTCGGTTCCTATGAGAGATATCAAAATATTGTCGATTGATAAAATGTAGCTGATAACATGATAAATACTTTATCAGTTGGCACGTTTAAGATATCTCTTCTAAGAACGGAGAAAATTGAGCTCAAAGAGCATAGGGTAAGCTTAGGAGCTGCAAATCTGAAATTTAACCTGATAAGGGTGTCAGCATAGGAAACAGCTAAAACTGTTGAGAAAATAAATAGKACTGTGATATTCTGAAATCTCATTTTTCAATTCGATGTCCAAATGGGCTCTCTGGATCCCCTTATATTGGGTTTCTTTGATTCATGATCACATTCATTATGAAAATTTAAATCAATGAATTATATATGATTACACAGTTAATATGATAATGAGTGTGGGTTGGAAATTTTTGCAAAAAAGGGAAGGAACAAAGCACAGAAAAGTGAAAAATTGGGAGACTTGGCACCATAAACTGGGAAAGGAAAAAATTGAAAATCTAGCGAAGGAGCAAGCGAATTGAGACATAAAATTGAGAAAATTCGGATTCAGATACAATTATTGACGTGCATGTCGTGAAGCTTATGACGACCCTCGTAGATTTGATCCATGATTTCGGTGGTTGATTGTTTGCAGCTGCAAAAAAATTGGGTGAAAAAAATATACATTGGTTTGCCAGTAAACGTCAAAAATGTTCAAAAGTTCAAAAAATCAAAAACTTTTGATTTTTTGAACATTTGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGTACT</site>
                <isoschizomers>
                    <enzyme>Acc113I</enzyme>
                    <enzyme>ScaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 259 241</canonical_bands>
                <polymorphic_bands>741 259</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>502 257 241</canonical_bands>
                <polymorphic_bands>743 257</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATTTAACCTGATAAGGGTGT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTTCCAACCCACACT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>GAAATTTAACCTGATAAGGGTGTCAGCATAGGAAACAGCTAAAACTGTTGAGAAAATAAATAGTACTGTGATATTCTGAAATCTCATTTTTCAATTCGATGTCCAAATGGGCTCTCTGGATCCCCTTATATTGGGTTTCTTTGATTCATGATCACATTCATTATGAAAATTTAAATCAATGAATTATATATGATTACACAGTTAATATGATAATGAGTGTGGGTTGGAAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAAATTTAACCTGATAAGGGTGTCAGCATAGGAAACAGCTAAAACTGTTGAGAAAATAAATAGKACTGTGATATTCTGAAATCTCATTTTTCAATTCGATGTCCAAATGGGCTCTCTGGATCCCCTTATATTGGGTTTCTTTGATTCATGATCACATTCATTATGAAAATTTAAATCAATGAATTATATATGATTACACAGTTAATATGATAATGAGTGTGGGTTGGAAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13211</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>312633</contig_pos>
        <strand>+</strand>
        <context>CTAGAGTTTC[A/C]GATTTTTATC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTCGAGTTTTTTCTTCTCCCAAAATTGCCAGCACCTGTCTAGAGTTTC</left_flank>
        <right_flank>GATTTTTATCTTTCCAGAATGTAGAAATAAATGAATCTCATCGTAAGAGT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTTATTGCAATTACTCTAATAGAAGCCTGGTGGGCTTAGCCCATCCTACCCCGTTAACTCTGAGCTCAATTATCTCGGTTCTTATGAGAGTTATCAAAAATATGCCAACTAATAAAATAATTATCATAATGTCACCAACATTTTATCAGTTGATGTATTATTGATACCTTTAACAGGAATCGAGATAATTGAGCTCAAAGTTGACGGCTTGGGTGGGCTTCAATCAGGAGAAATTCGGTATCGTTGAATTTTTGAATTTCAGCGCCAACATTTTATGCCATTTTTTTGTTTTCAGTTTCAATTTCAGTTTTTGATCTGTCTCTGTAACTTCATACGTATTTGCTCCATTGTTTTTTTTTCGATTTCTAAATCAACATTAGTTTGGTTTCTGTACTTTTCATAAGAATGACCGAAATTTATATCAATTCCATATTATTAAAAGTTTTTTTTCGAGTTTTTTCTTCTCCCAAAATTGCCAGCACCTGTCTAGAGTTTCCGATTTTTATCTTTCCAGAATGTAGAAATAAATGAATCTCATCGTAAGAGTTCTGGAATCTTGGAATCCGTGAATTACGTACTTGTTCTAGTAGGAGCCCACCCAAACTGTCAACTTTGAGCTCATATATCTCATTTTTTGTGAAAGATATCAAAAATTCTGCCAGGGTGAAATATTGGTGATAATATGATGAATATTTTATCAGTTGACAACTTTTTGATATCTTTCACAGGAAATGAGACATATGGACTCAAAGTTGGCGGTTTGGGTAGTACTCAATTAGAATCTTAACGACGTTTGTATTCACTACACATATTGGAATAAAGAAATTATCGAATTTCAGAATTTCAGGATCTTAGAAACCTAAACTTTCAAAATACCTTTGTAATTATCCATCGGAATGTCAAAAAAGTTGCAGTTTTTGACCTGAATCTGTAAATGCATACGTCTTTGCTCTTCTCTATTTCGAGAGCAATATTTTGTTCTTTCCAGACCAATGAC</canonical>
            <polymorphic>TAATTTATTGCAATTACTCTAATAGAAGCCTGGTGGGCTTAGCCCATCCTACCCCGTTAACTCTGAGCTCAATTATCTCGGTTCTTATGAGAGTTATCAAAAATATGCCAACTAATAAAATAATTATCATAATGTCACCAACATTTTATCAGTTGATGTATTATTGATACCTTTAACAGGAATCGAGATAATTGAGCTCAAAGTTGACGGCTTGGGTGGGCTTCAATCAGGAGAAATTCGGTATCGTTGAATTTTTGAATTTCAGCGCCAACATTTTATGCCATTTTTTTGTTTTCAGTTTCAATTTCAGTTTTTGATCTGTCTCTGTAACTTCATACGTATTTGCTCCATTGTTTTTTTTTCGATTTCTAAATCAACATTAGTTTGGTTTCTGTACTTTTCATAAGAATGACCGAAATTTATATCAATTCCATATTATTAAAAGTTTTTTTTCGAGTTTTTTCTTCTCCCAAAATTGCCAGCACCTGTCTAGAGTTTCMGATTTTTATCTTTCCAGAATGTAGAAATAAATGAATCTCATCGTAAGAGTTCTGGAATCTTGGAATCCGTGAATTACGTACTTGTTCTAGTAGGAGCCCACCCAAACTGTCAACTTTGAGCTCATATATCTCATTTTTTGTGAAAGATATCAAAAATTCTGCCAGGGTGAAATATTGGTGATAATATGATGAATATTTTATCAGTTGACAACTTTTTGATATCTTTCACAGGAAATGAGACATATGGACTCAAAGTTGGCGGTTTGGGTAGTACTCAATTAGAATCTTAACGACGTTTGTATTCACTACACATATTGGAATAAAGAAATTATCGAATTTCAGAATTTCAGGATCTTAGAAACCTAAACTTTCAAAATACCTTTGTAATTATCCATCGGAATGTCAAAAAAGTTGCAGTTTTTGACCTGAATCTGTAAATGCATACGTCTTTGCTCTTCTCTATTTCGAGAGCAATATTTTGTTCTTTCCAGACCAATGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGATCTGTCTCTGTAACTTCA</pcr_primer_p1>
		<pcr_primer_p2>GATTCCAGAACTCTTACGATGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTGATCTGTCTCTGTAACTTCATACGTATTTGCTCCATTGTTTTTTTTTCGATTTCTAAATCAACATTAGTTTGGTTTCTGTACTTTTCATAAGAATGACCGAAATTTATATCAATTCCATATTATTAAAAGTTTTTTTTCGAGTTTTTTCTTCTCCCAAAATTGCCAGCACCTGTCTAGAGTTTCCGATTTTTATCTTTCCAGAATGTAGAAATAAATGAATCTCATCGTAAGAGTTCTGGAATC</canonical_amplicon>
		<polymorphic_amplicon>TTTGATCTGTCTCTGTAACTTCATACGTATTTGCTCCATTGTTTTTTTTTCGATTTCTAAATCAACATTAGTTTGGTTTCTGTACTTTTCATAAGAATGACCGAAATTTATATCAATTCCATATTATTAAAAGTTTTTTTTCGAGTTTTTTCTTCTCCCAAAATTGCCAGCACCTGTCTAGAGTTTCMGATTTTTATCTTTCCAGAATGTAGAAATAAATGAATCTCATCGTAAGAGTTCTGGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13212</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>312646</contig_pos>
        <strand>+</strand>
        <context>TTTTTATCTT[C/T]CCAGAATGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTCTCCCAAAATTGCCAGCACCTGTCTAGAGTTTCCGATTTTTATCTT</left_flank>
        <right_flank>CCAGAATGTAGAAATAAATGAATCTCATCGTAAGAGTTCTGGAATCTTGG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACTCTAATAGAAGCCTGGTGGGCTTAGCCCATCCTACCCCGTTAACTCTGAGCTCAATTATCTCGGTTCTTATGAGAGTTATCAAAAATATGCCAACTAATAAAATAATTATCATAATGTCACCAACATTTTATCAGTTGATGTATTATTGATACCTTTAACAGGAATCGAGATAATTGAGCTCAAAGTTGACGGCTTGGGTGGGCTTCAATCAGGAGAAATTCGGTATCGTTGAATTTTTGAATTTCAGCGCCAACATTTTATGCCATTTTTTTGTTTTCAGTTTCAATTTCAGTTTTTGATCTGTCTCTGTAACTTCATACGTATTTGCTCCATTGTTTTTTTTTCGATTTCTAAATCAACATTAGTTTGGTTTCTGTACTTTTCATAAGAATGACCGAAATTTATATCAATTCCATATTATTAAAAGTTTTTTTTCGAGTTTTTTCTTCTCCCAAAATTGCCAGCACCTGTCTAGAGTTTCCGATTTTTATCTTTCCAGAATGTAGAAATAAATGAATCTCATCGTAAGAGTTCTGGAATCTTGGAATCCGTGAATTACGTACTTGTTCTAGTAGGAGCCCACCCAAACTGTCAACTTTGAGCTCATATATCTCATTTTTTGTGAAAGATATCAAAAATTCTGCCAGGGTGAAATATTGGTGATAATATGATGAATATTTTATCAGTTGACAACTTTTTGATATCTTTCACAGGAAATGAGACATATGGACTCAAAGTTGGCGGTTTGGGTAGTACTCAATTAGAATCTTAACGACGTTTGTATTCACTACACATATTGGAATAAAGAAATTATCGAATTTCAGAATTTCAGGATCTTAGAAACCTAAACTTTCAAAATACCTTTGTAATTATCCATCGGAATGTCAAAAAAGTTGCAGTTTTTGACCTGAATCTGTAAATGCATACGTCTTTGCTCTTCTCTATTTCGAGAGCAATATTTTGTTCTTTCCAGACCAATGACCCACAACTTTCAG</canonical>
            <polymorphic>TTACTCTAATAGAAGCCTGGTGGGCTTAGCCCATCCTACCCCGTTAACTCTGAGCTCAATTATCTCGGTTCTTATGAGAGTTATCAAAAATATGCCAACTAATAAAATAATTATCATAATGTCACCAACATTTTATCAGTTGATGTATTATTGATACCTTTAACAGGAATCGAGATAATTGAGCTCAAAGTTGACGGCTTGGGTGGGCTTCAATCAGGAGAAATTCGGTATCGTTGAATTTTTGAATTTCAGCGCCAACATTTTATGCCATTTTTTTGTTTTCAGTTTCAATTTCAGTTTTTGATCTGTCTCTGTAACTTCATACGTATTTGCTCCATTGTTTTTTTTTCGATTTCTAAATCAACATTAGTTTGGTTTCTGTACTTTTCATAAGAATGACCGAAATTTATATCAATTCCATATTATTAAAAGTTTTTTTTCGAGTTTTTTCTTCTCCCAAAATTGCCAGCACCTGTCTAGAGTTTCCGATTTTTATCTTYCCAGAATGTAGAAATAAATGAATCTCATCGTAAGAGTTCTGGAATCTTGGAATCCGTGAATTACGTACTTGTTCTAGTAGGAGCCCACCCAAACTGTCAACTTTGAGCTCATATATCTCATTTTTTGTGAAAGATATCAAAAATTCTGCCAGGGTGAAATATTGGTGATAATATGATGAATATTTTATCAGTTGACAACTTTTTGATATCTTTCACAGGAAATGAGACATATGGACTCAAAGTTGGCGGTTTGGGTAGTACTCAATTAGAATCTTAACGACGTTTGTATTCACTACACATATTGGAATAAAGAAATTATCGAATTTCAGAATTTCAGGATCTTAGAAACCTAAACTTTCAAAATACCTTTGTAATTATCCATCGGAATGTCAAAAAAGTTGCAGTTTTTGACCTGAATCTGTAAATGCATACGTCTTTGCTCTTCTCTATTTCGAGAGCAATATTTTGTTCTTTCCAGACCAATGACCCACAACTTTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>296 262 171 118 44 38 25 24 22</canonical_bands>
                <polymorphic_bands>296 262 171 118 62 44 25 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACGTATTTGCTCCATTGTTT</pcr_primer_p1>
		<pcr_primer_p2>GTAATTCACGGATTCCAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATACGTATTTGCTCCATTGTTTTTTTTTCGATTTCTAAATCAACATTAGTTTGGTTTCTGTACTTTTCATAAGAATGACCGAAATTTATATCAATTCCATATTATTAAAAGTTTTTTTTCGAGTTTTTTCTTCTCCCAAAATTGCCAGCACCTGTCTAGAGTTTCCGATTTTTATCTTTCCAGAATGTAGAAATAAATGAATCTCATCGTAAGAGTTCTGGAATCTTGGAATCCGTGAATTAC</canonical_amplicon>
		<polymorphic_amplicon>ATACGTATTTGCTCCATTGTTTTTTTTTCGATTTCTAAATCAACATTAGTTTGGTTTCTGTACTTTTCATAAGAATGACCGAAATTTATATCAATTCCATATTATTAAAAGTTTTTTTTCGAGTTTTTTCTTCTCCCAAAATTGCCAGCACCTGTCTAGAGTTTCCGATTTTTATCTTYCCAGAATGTAGAAATAAATGAATCTCATCGTAAGAGTTCTGGAATCTTGGAATCCGTGAATTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13213</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>312714</contig_pos>
        <strand>+</strand>
        <context>GAATTACGTA[C/T]TTGTTCtagt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGAATCTCATCGTAAGAGTTCTGGAATCTTGGAATCCGTGAATTACGTA</left_flank>
        <right_flank>TTGTTCTAGTAGGAGCCCACCCAAACTGTCAACTTTGAGCTCATATATCT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTATGAGAGTTATCAAAAATATGCCAACTAATAAAATAATTATCATAATGTCACCAACATTTTATCAGTTGATGTATTATTGATACCTTTAACAGGAATCGAGATAATTGAGCTCAAAGTTGACGGCTTGGGTGGGCTTCAATCAGGAGAAATTCGGTATCGTTGAATTTTTGAATTTCAGCGCCAACATTTTATGCCATTTTTTTGTTTTCAGTTTCAATTTCAGTTTTTGATCTGTCTCTGTAACTTCATACGTATTTGCTCCATTGTTTTTTTTTCGATTTCTAAATCAACATTAGTTTGGTTTCTGTACTTTTCATAAGAATGACCGAAATTTATATCAATTCCATATTATTAAAAGTTTTTTTTCGAGTTTTTTCTTCTCCCAAAATTGCCAGCACCTGTCTAGAGTTTCCGATTTTTATCTTTCCAGAATGTAGAAATAAATGAATCTCATCGTAAGAGTTCTGGAATCTTGGAATCCGTGAATTACGTACTTGTTCTAGTAGGAGCCCACCCAAACTGTCAACTTTGAGCTCATATATCTCATTTTTTGTGAAAGATATCAAAAATTCTGCCAGGGTGAAATATTGGTGATAATATGATGAATATTTTATCAGTTGACAACTTTTTGATATCTTTCACAGGAAATGAGACATATGGACTCAAAGTTGGCGGTTTGGGTAGTACTCAATTAGAATCTTAACGACGTTTGTATTCACTACACATATTGGAATAAAGAAATTATCGAATTTCAGAATTTCAGGATCTTAGAAACCTAAACTTTCAAAATACCTTTGTAATTATCCATCGGAATGTCAAAAAAGTTGCAGTTTTTGACCTGAATCTGTAAATGCATACGTCTTTGCTCTTCTCTATTTCGAGAGCAATATTTTGTTCTTTCCAGACCAATGACCCACAACTTTCAGTCTTCCCCCAATTTTTCCTTTCTTCCCAACCTTCTTTCCAACCAGTCTTTGAAAATACCACCTGTCCA</canonical>
            <polymorphic>TTCTTATGAGAGTTATCAAAAATATGCCAACTAATAAAATAATTATCATAATGTCACCAACATTTTATCAGTTGATGTATTATTGATACCTTTAACAGGAATCGAGATAATTGAGCTCAAAGTTGACGGCTTGGGTGGGCTTCAATCAGGAGAAATTCGGTATCGTTGAATTTTTGAATTTCAGCGCCAACATTTTATGCCATTTTTTTGTTTTCAGTTTCAATTTCAGTTTTTGATCTGTCTCTGTAACTTCATACGTATTTGCTCCATTGTTTTTTTTTCGATTTCTAAATCAACATTAGTTTGGTTTCTGTACTTTTCATAAGAATGACCGAAATTTATATCAATTCCATATTATTAAAAGTTTTTTTTCGAGTTTTTTCTTCTCCCAAAATTGCCAGCACCTGTCTAGAGTTTCCGATTTTTATCTTTCCAGAATGTAGAAATAAATGAATCTCATCGTAAGAGTTCTGGAATCTTGGAATCCGTGAATTACGTAYTTGTTCTAGTAGGAGCCCACCCAAACTGTCAACTTTGAGCTCATATATCTCATTTTTTGTGAAAGATATCAAAAATTCTGCCAGGGTGAAATATTGGTGATAATATGATGAATATTTTATCAGTTGACAACTTTTTGATATCTTTCACAGGAAATGAGACATATGGACTCAAAGTTGGCGGTTTGGGTAGTACTCAATTAGAATCTTAACGACGTTTGTATTCACTACACATATTGGAATAAAGAAATTATCGAATTTCAGAATTTCAGGATCTTAGAAACCTAAACTTTCAAAATACCTTTGTAATTATCCATCGGAATGTCAAAAAAGTTGCAGTTTTTGACCTGAATCTGTAAATGCATACGTCTTTGCTCTTCTCTATTTCGAGAGCAATATTTTGTTCTTTCCAGACCAATGACCCACAACTTTCAGTCTTCCCCCAATTTTTCCTTTCTTCCCAACCTTCTTTCCAACCAGTCTTTGAAAATACCACCTGTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>314 309 193 184</canonical_bands>
                <polymorphic_bands>377 314 309</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAATAAATGAATCTCATCGTAAG</pcr_primer_p1>
		<pcr_primer_p2>GTAGTGAATACAAACGTCGTTAAG</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>AGAAATAAATGAATCTCATCGTAAGAGTTCTGGAATCTTGGAATCCGTGAATTACGTACTTGTTCTAGTAGGAGCCCACCCAAACTGTCAACTTTGAGCTCATATATCTCATTTTTTGTGAAAGATATCAAAAATTCTGCCAGGGTGAAATATTGGTGATAATATGATGAATATTTTATCAGTTGACAACTTTTTGATATCTTTCACAGGAAATGAGACATATGGACTCAAAGTTGGCGGTTTGGGTAGTACTCAATTAGAATCTTAACGACGTTTGTATTCACTAC</canonical_amplicon>
		<polymorphic_amplicon>AGAAATAAATGAATCTCATCGTAAGAGTTCTGGAATCTTGGAATCCGTGAATTACGTAYTTGTTCTAGTAGGAGCCCACCCAAACTGTCAACTTTGAGCTCATATATCTCATTTTTTGTGAAAGATATCAAAAATTCTGCCAGGGTGAAATATTGGTGATAATATGATGAATATTTTATCAGTTGACAACTTTTTGATATCTTTCACAGGAAATGAGACATATGGACTCAAAGTTGGCGGTTTGGGTAGTACTCAATTAGAATCTTAACGACGTTTGTATTCACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13214</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>328658</contig_pos>
        <strand>+</strand>
        <context>CTGAGAATCA[A/G]ACAACTCGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGCTTCTGTCGCCCATCAGATGAATATCTCGCCAGGTTTCTGAGAATCA</left_flank>
        <right_flank>ACAACTCGTCAATCGAATACTCTTCGTCACTGGACCTTCGGCTTCATCCG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAACGGTGACGGTTGGGTGGGAAGATGTTGAATTGGCTGGTGTCGGGCGGCGAATGACGTAGATGGCTGGAAAAATTACTTTCAGAATTTTTTAAATAAACTTGCGCTTCAGAGTCTGAAGCTCAGACAAACCTTATCAGAAGACGTGGAAGGTCCCAAAGATGAGAAATTCAACATCCTATTCACTGGAGCCACTGGTTTGGGAACTGGTTTTCGGAATGGCTCCTCCGTCAATTGTGTAGTCGGCGAATCAGGAATCGGCGGCAGCTGAGACGAACTTCCAGCCATTGAAGACAACGATGCGGATGATGGAGCCTGCGATAATGACTTTTGGGATTCCTCCTCTGCAGCTGGCGCTTGATGCAACTCTGATAGCAATTGGGAGAGAGCATGCGAGCTTTCTAGCTTGGATAATGCCAACCAGCTGATGTGCGACTCGTGACGTCGAAGCTTCTGTCGCCCATCAGATGAATATCTCGCCAGGTTTCTGAGAATCAAACAACTCGTCAATCGAATACTCTTCGTCACTGGACCTTCGGCTTCATCCGGAAGTTCTCGAGTCAAAAAGTTGAAGGCGTGTCTTCGGATAGCTTCGTTAGCAGCGTTCGTAGCGTATCCCGGATGATTGTTCAAATCGCGTGGAATGATTTCCGATCGTCGTACGGTAGGAATCACAACCCCGTCTTTTCTCCGTTGTGCCGCCTGTTTTAACTGTGTCTCGTTGCAATGCACATCCTGGATATGGGTGATAAGGGACCAGCGATTACGAGGCGTTGGGTCAGCGCAGCCATTCCAGCGGCACAGTACACGAAGCTCCTCTGCCACGTGTTCTTCGGATAAGTGCTTGAGGACGTGGGAAGGAGAGAAGTAGTACAGGGAGCAGCAATCCCAATCGCACATGTAGTCAGTTGGTGTCGAGCAGACAGGAACACATTTACGATCTGACTGTGGCTCTGCTGTGACGGCTTCTTTTGGCTTGTCTTCCTCTACTGGCTCCT</canonical>
            <polymorphic>ACCAACGGTGACGGTTGGGTGGGAAGATGTTGAATTGGCTGGTGTCGGGCGGCGAATGACGTAGATGGCTGGAAAAATTACTTTCAGAATTTTTTAAATAAACTTGCGCTTCAGAGTCTGAAGCTCAGACAAACCTTATCAGAAGACGTGGAAGGTCCCAAAGATGAGAAATTCAACATCCTATTCACTGGAGCCACTGGTTTGGGAACTGGTTTTCGGAATGGCTCCTCCGTCAATTGTGTAGTCGGCGAATCAGGAATCGGCGGCAGCTGAGACGAACTTCCAGCCATTGAAGACAACGATGCGGATGATGGAGCCTGCGATAATGACTTTTGGGATTCCTCCTCTGCAGCTGGCGCTTGATGCAACTCTGATAGCAATTGGGAGAGAGCATGCGAGCTTTCTAGCTTGGATAATGCCAACCAGCTGATGTGCGACTCGTGACGTCGAAGCTTCTGTCGCCCATCAGATGAATATCTCGCCAGGTTTCTGAGAATCARACAACTCGTCAATCGAATACTCTTCGTCACTGGACCTTCGGCTTCATCCGGAAGTTCTCGAGTCAAAAAGTTGAAGGCGTGTCTTCGGATAGCTTCGTTAGCAGCGTTCGTAGCGTATCCCGGATGATTGTTCAAATCGCGTGGAATGATTTCCGATCGTCGTACGGTAGGAATCACAACCCCGTCTTTTCTCCGTTGTGCCGCCTGTTTTAACTGTGTCTCGTTGCAATGCACATCCTGGATATGGGTGATAAGGGACCAGCGATTACGAGGCGTTGGGTCAGCGCAGCCATTCCAGCGGCACAGTACACGAAGCTCCTCTGCCACGTGTTCTTCGGATAAGTGCTTGAGGACGTGGGAAGGAGAGAAGTAGTACAGGGAGCAGCAATCCCAATCGCACATGTAGTCAGTTGGTGTCGAGCAGACAGGAACACATTTACGATCTGACTGTGGCTCTGCTGTGACGGCTTCTTTTGGCTTGTCTTCCTCTACTGGCTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAATGACTTTTGGGATTCCTC</pcr_primer_p1>
		<pcr_primer_p2>TTCAACTTTTTGACTCGAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ATAATGACTTTTGGGATTCCTCCTCTGCAGCTGGCGCTTGATGCAACTCTGATAGCAATTGGGAGAGAGCATGCGAGCTTTCTAGCTTGGATAATGCCAACCAGCTGATGTGCGACTCGTGACGTCGAAGCTTCTGTCGCCCATCAGATGAATATCTCGCCAGGTTTCTGAGAATCAAACAACTCGTCAATCGAATACTCTTCGTCACTGGACCTTCGGCTTCATCCGGAAGTTCTCGAGTCAAAAAGTTGAA</canonical_amplicon>
		<polymorphic_amplicon>ATAATGACTTTTGGGATTCCTCCTCTGCAGCTGGCGCTTGATGCAACTCTGATAGCAATTGGGAGAGAGCATGCGAGCTTTCTAGCTTGGATAATGCCAACCAGCTGATGTGCGACTCGTGACGTCGAAGCTTCTGTCGCCCATCAGATGAATATCTCGCCAGGTTTCTGAGAATCARACAACTCGTCAATCGAATACTCTTCGTCACTGGACCTTCGGCTTCATCCGGAAGTTCTCGAGTCAAAAAGTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13215</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>332989</contig_pos>
        <strand>+</strand>
        <context>AAAGTGAGGG[A/G]AGgcggataa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATCATTGGGAAAGGTAAAAGATCTTCTAAAAGAGGTAAAAAGTGAGGG</left_flank>
        <right_flank>AGGCGGATAAGCGCTTGTGAGCGAAAATTTCCTTTAGAGGCGCATGGCCG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAAAAACGAAGTGGCATTCCTCCCTCGACTTCTCGACATCTCATTATCCACATAGTCATCAACATCTCCGATCGTTTCGACTTGTTCGAATTTCGATAAATACCTCATATAGATCAATTTAATCGCATGATCACCACACAAAATGTCGTCTTTGCAGCCGAACATTTCAGCGATATCCGACCATTTATCGCCGGCCGCCACTTTCTGCCAACCACCCAACGCCATCACTGTATCATAGAGACGATAGAGGTTGACTTCAACTCCTTGCACGTGTGGCAGCTTCAGTTGAGCGTTCCATCGTCGTTTGTAGAATAGACGGAGACTGTTGTAGAATTCGGCCATCTTCTTCTGCTTCTCTGGCGGATCCGTCAATTTGTCGATGTAGAGCTCGAGCTCGGATTTTCGTTTTCGACTCTCCATCGTTATGTGTGTATATGGCTCTGGAAATTGATCATTGGGAAAGGTAAAAGATCTTCTAAAAGAGGTAAAAAGTGAGGGAAGGCGGATAAGCGCTTGTGAGCGAAAATTTCCTTTAGAGGCGCATGGCCGAAGGGAATAGCTACGGATTTTTACAAATGAATTCGTTTGAAACAGTAACTATAAGTAAATTCATCTGATTATTCAGGAGAATCTGAAGAATTTGGGCAAAAATATGATAATTCCGAAGTACTGTATTAAAGGCTCATGAAGCTTTCTTCATGACCGGCTATGCGGAAGTTCATCGGCACCGGACAAGAATAATATCAAACTGTGATGTTGAGTTGACCTAAAAACCTAAAAATCAATACTCCTGAAAATTATCGATTTTTCACGCGAAATTTGAATTTCACGTAAAATTCGCATTCACGCGTGTGAAACTCACGTTTGAACGCGGCGCAAACGTGGGATTTTCGCGCGCGCGAAATTTGAATTTACGTGTGCCCGCCTCTCTTCTGAAGAGACGAACCGAGGTAGAAAGCCTCTAGAACGGAAAAAAAACCTATTTTCAGGAAAACCAAA</canonical>
            <polymorphic>CGAAAAACGAAGTGGCATTCCTCCCTCGACTTCTCGACATCTCATTATCCACATAGTCATCAACATCTCCGATCGTTTCGACTTGTTCGAATTTCGATAAATACCTCATATAGATCAATTTAATCGCATGATCACCACACAAAATGTCGTCTTTGCAGCCGAACATTTCAGCGATATCCGACCATTTATCGCCGGCCGCCACTTTCTGCCAACCACCCAACGCCATCACTGTATCATAGAGACGATAGAGGTTGACTTCAACTCCTTGCACGTGTGGCAGCTTCAGTTGAGCGTTCCATCGTCGTTTGTAGAATAGACGGAGACTGTTGTAGAATTCGGCCATCTTCTTCTGCTTCTCTGGCGGATCCGTCAATTTGTCGATGTAGAGCTCGAGCTCGGATTTTCGTTTTCGACTCTCCATCGTTATGTGTGTATATGGCTCTGGAAATTGATCATTGGGAAAGGTAAAAGATCTTCTAAAAGAGGTAAAAAGTGAGGGRAGGCGGATAAGCGCTTGTGAGCGAAAATTTCCTTTAGAGGCGCATGGCCGAAGGGAATAGCTACGGATTTTTACAAATGAATTCGTTTGAAACAGTAACTATAAGTAAATTCATCTGATTATTCAGGAGAATCTGAAGAATTTGGGCAAAAATATGATAATTCCGAAGTACTGTATTAAAGGCTCATGAAGCTTTCTTCATGACCGGCTATGCGGAAGTTCATCGGCACCGGACAAGAATAATATCAAACTGTGATGTTGAGTTGACCTAAAAACCTAAAAATCAATACTCCTGAAAATTATCGATTTTTCACGCGAAATTTGAATTTCACGTAAAATTCGCATTCACGCGTGTGAAACTCACGTTTGAACGCGGCGCAAACGTGGGATTTTCGCGCGCGCGAAATTTGAATTTACGTGTGCCCGCCTCTCTTCTGAAGAGACGAACCGAGGTAGAAAGCCTCTAGAACGGAAAAAAAACCTATTTTCAGGAAAACCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATCATTGGGAAAGGTAAA</pcr_primer_p1>
		<pcr_primer_p2>GTCAACTCAACATCACAGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>318</pcr_amplicon_size>
		<canonical_amplicon>TGATCATTGGGAAAGGTAAAAGATCTTCTAAAAGAGGTAAAAAGTGAGGGAAGGCGGATAAGCGCTTGTGAGCGAAAATTTCCTTTAGAGGCGCATGGCCGAAGGGAATAGCTACGGATTTTTACAAATGAATTCGTTTGAAACAGTAACTATAAGTAAATTCATCTGATTATTCAGGAGAATCTGAAGAATTTGGGCAAAAATATGATAATTCCGAAGTACTGTATTAAAGGCTCATGAAGCTTTCTTCATGACCGGCTATGCGGAAGTTCATCGGCACCGGACAAGAATAATATCAAACTGTGATGTTGAGTTGAC</canonical_amplicon>
		<polymorphic_amplicon>TGATCATTGGGAAAGGTAAAAGATCTTCTAAAAGAGGTAAAAAGTGAGGGRAGGCGGATAAGCGCTTGTGAGCGAAAATTTCCTTTAGAGGCGCATGGCCGAAGGGAATAGCTACGGATTTTTACAAATGAATTCGTTTGAAACAGTAACTATAAGTAAATTCATCTGATTATTCAGGAGAATCTGAAGAATTTGGGCAAAAATATGATAATTCCGAAGTACTGTATTAAAGGCTCATGAAGCTTTCTTCATGACCGGCTATGCGGAAGTTCATCGGCACCGGACAAGAATAATATCAAACTGTGATGTTGAGTTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13216</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>332915</contig_pos>
        <strand>+</strand>
        <context>CTCCATCGTT[A/C]TGTGTGTATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGTCGATGTAGAGCTCGAGCTCGGATTTTCGTTTTCGACTCTCCATCGTT</left_flank>
        <right_flank>TGTGTGTATATGGCTCTGGAAATTGATCATTGGGAAAGGTAAAAGATCTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCTGTCCTCGCTCGTCCCGATAAGTCTGCACTATATGATGCCGCTCAATGCTCATTGGATTATCGTTCGTGGCGAAAAACGAAGTGGCATTCCTCCCTCGACTTCTCGACATCTCATTATCCACATAGTCATCAACATCTCCGATCGTTTCGACTTGTTCGAATTTCGATAAATACCTCATATAGATCAATTTAATCGCATGATCACCACACAAAATGTCGTCTTTGCAGCCGAACATTTCAGCGATATCCGACCATTTATCGCCGGCCGCCACTTTCTGCCAACCACCCAACGCCATCACTGTATCATAGAGACGATAGAGGTTGACTTCAACTCCTTGCACGTGTGGCAGCTTCAGTTGAGCGTTCCATCGTCGTTTGTAGAATAGACGGAGACTGTTGTAGAATTCGGCCATCTTCTTCTGCTTCTCTGGCGGATCCGTCAATTTGTCGATGTAGAGCTCGAGCTCGGATTTTCGTTTTCGACTCTCCATCGTTATGTGTGTATATGGCTCTGGAAATTGATCATTGGGAAAGGTAAAAGATCTTCTAAAAGAGGTAAAAAGTGAGGGAAGGCGGATAAGCGCTTGTGAGCGAAAATTTCCTTTAGAGGCGCATGGCCGAAGGGAATAGCTACGGATTTTTACAAATGAATTCGTTTGAAACAGTAACTATAAGTAAATTCATCTGATTATTCAGGAGAATCTGAAGAATTTGGGCAAAAATATGATAATTCCGAAGTACTGTATTAAAGGCTCATGAAGCTTTCTTCATGACCGGCTATGCGGAAGTTCATCGGCACCGGACAAGAATAATATCAAACTGTGATGTTGAGTTGACCTAAAAACCTAAAAATCAATACTCCTGAAAATTATCGATTTTTCACGCGAAATTTGAATTTCACGTAAAATTCGCATTCACGCGTGTGAAACTCACGTTTGAACGCGGCGCAAACGTGGGATTTTCGCGCGCGCGAAATTTGAATTTACGTGTGCCCGC</canonical>
            <polymorphic>AATCTGTCCTCGCTCGTCCCGATAAGTCTGCACTATATGATGCCGCTCAATGCTCATTGGATTATCGTTCGTGGCGAAAAACGAAGTGGCATTCCTCCCTCGACTTCTCGACATCTCATTATCCACATAGTCATCAACATCTCCGATCGTTTCGACTTGTTCGAATTTCGATAAATACCTCATATAGATCAATTTAATCGCATGATCACCACACAAAATGTCGTCTTTGCAGCCGAACATTTCAGCGATATCCGACCATTTATCGCCGGCCGCCACTTTCTGCCAACCACCCAACGCCATCACTGTATCATAGAGACGATAGAGGTTGACTTCAACTCCTTGCACGTGTGGCAGCTTCAGTTGAGCGTTCCATCGTCGTTTGTAGAATAGACGGAGACTGTTGTAGAATTCGGCCATCTTCTTCTGCTTCTCTGGCGGATCCGTCAATTTGTCGATGTAGAGCTCGAGCTCGGATTTTCGTTTTCGACTCTCCATCGTTMTGTGTGTATATGGCTCTGGAAATTGATCATTGGGAAAGGTAAAAGATCTTCTAAAAGAGGTAAAAAGTGAGGGAAGGCGGATAAGCGCTTGTGAGCGAAAATTTCCTTTAGAGGCGCATGGCCGAAGGGAATAGCTACGGATTTTTACAAATGAATTCGTTTGAAACAGTAACTATAAGTAAATTCATCTGATTATTCAGGAGAATCTGAAGAATTTGGGCAAAAATATGATAATTCCGAAGTACTGTATTAAAGGCTCATGAAGCTTTCTTCATGACCGGCTATGCGGAAGTTCATCGGCACCGGACAAGAATAATATCAAACTGTGATGTTGAGTTGACCTAAAAACCTAAAAATCAATACTCCTGAAAATTATCGATTTTTCACGCGAAATTTGAATTTCACGTAAAATTCGCATTCACGCGTGTGAAACTCACGTTTGAACGCGGCGCAAACGTGGGATTTTCGCGCGCGCGAAATTTGAATTTACGTGTGCCCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>497 427 76</canonical_bands>
                <polymorphic_bands>924 76</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATAGAGACGATAGAGGTTGAC</pcr_primer_p1>
		<pcr_primer_p2>CCCTCACTTTTTACCTCTTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>266</pcr_amplicon_size>
		<canonical_amplicon>TCATAGAGACGATAGAGGTTGACTTCAACTCCTTGCACGTGTGGCAGCTTCAGTTGAGCGTTCCATCGTCGTTTGTAGAATAGACGGAGACTGTTGTAGAATTCGGCCATCTTCTTCTGCTTCTCTGGCGGATCCGTCAATTTGTCGATGTAGAGCTCGAGCTCGGATTTTCGTTTTCGACTCTCCATCGTTATGTGTGTATATGGCTCTGGAAATTGATCATTGGGAAAGGTAAAAGATCTTCTAAAAGAGGTAAAAAGTGAGGG</canonical_amplicon>
		<polymorphic_amplicon>TCATAGAGACGATAGAGGTTGACTTCAACTCCTTGCACGTGTGGCAGCTTCAGTTGAGCGTTCCATCGTCGTTTGTAGAATAGACGGAGACTGTTGTAGAATTCGGCCATCTTCTTCTGCTTCTCTGGCGGATCCGTCAATTTGTCGATGTAGAGCTCGAGCTCGGATTTTCGTTTTCGACTCTCCATCGTTMTGTGTGTATATGGCTCTGGAAATTGATCATTGGGAAAGGTAAAAGATCTTCTAAAAGAGGTAAAAAGTGAGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13218</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>15231</contig_pos>
        <strand>+</strand>
        <context>GAGAGCATCA[A/G]GTTCGTCAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGAAAAGTGATTCTGGACGATTGTGATGAAGGAGCCGCTGAGAGCATCA</left_flank>
        <right_flank>GTTCGTCAATGTGCCCCATGGAAGCGAGTGCGAGTGCTCGGCAGTGCCAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAGATTTTTCTGAACTTCCGGAGTTCCAGATATCCGTCGAATCTGGAAAAGAATGCGAGTTTGCGATGCGTCTTGTGCCTGGCTTCAATCCACTTGTCCAAAAAGACGCAGCCGGAAAAGAGTGTCGCGGAAACGTGGAATTACCGTTTTGCAAGGGATACTGTAAGACTAGTGAGGTACGAACTCACAGGGTGCCAACTGCTGCGGTATGCTGTTGCGCTTTAATGAGAAGATGACAAGGCAAAGTAGGCCGTTGAAAATTCAAATTTCTTGCAATTTTCAGCCTTGTCAATAGAGCACAGCTGCATACAACAGCAGTTCGAACTCATTATCAGTGGAGCGCACTTATCTCCATGAAATTCAAAATTCTGAGTTTCAGAGCGGCACTCATGGCTTCCCCCCACGTGTCCAAATCAGCAAAGTCTGTACTCTGGTGCAGACATCAATTCGAAAAGTGATTCTGGACGATTGTGATGAAGGAGCCGCTGAGAGCATCAAGTTCGTCAATGTGCCCCATGGAAGCGAGTGCGAGTGCTCGGCAGTGCCACTTGAGCAGAATCATTCATGACTTGAAAATTACAATTGTTTCAACGAGTTAAAAATTTATTTATAACAAGCGATTTCTTATGCTTCTTTTACACAGAGAGAATGTTTTTCACAGGAATGTTAAATTTCATAATGTTAATCGGTTAGATGTGTCAAGTTCATGGTTTCGTTCTTCCAGTCATTCGCATCTTCTTCGCCTCCACCACTTGAGGACTCGGTGATCGCGAGCGACTCGTGCTCATCTGAAATTCAAAATTTCTTATGAAAAGTTGAAAAAAGCTAGAAAACCAACCACTTTCTTCGAGATGAGACACGTTTTGCAGTGGTACACAAAGCTCGGTTCGGACGCTTCTTCAACGGAAACGGGCGGCACACTGCATCGCATGTGGAAGCAATCACGGCAGTTTTTACAGGCGAGCACTTGGTTTCCGGCTTGTGAGACACCGCCACAT</canonical>
            <polymorphic>CCAAGATTTTTCTGAACTTCCGGAGTTCCAGATATCCGTCGAATCTGGAAAAGAATGCGAGTTTGCGATGCGTCTTGTGCCTGGCTTCAATCCACTTGTCCAAAAAGACGCAGCCGGAAAAGAGTGTCGCGGAAACGTGGAATTACCGTTTTGCAAGGGATACTGTAAGACTAGTGAGGTACGAACTCACAGGGTGCCAACTGCTGCGGTATGCTGTTGCGCTTTAATGAGAAGATGACAAGGCAAAGTAGGCCGTTGAAAATTCAAATTTCTTGCAATTTTCAGCCTTGTCAATAGAGCACAGCTGCATACAACAGCAGTTCGAACTCATTATCAGTGGAGCGCACTTATCTCCATGAAATTCAAAATTCTGAGTTTCAGAGCGGCACTCATGGCTTCCCCCCACGTGTCCAAATCAGCAAAGTCTGTACTCTGGTGCAGACATCAATTCGAAAAGTGATTCTGGACGATTGTGATGAAGGAGCCGCTGAGAGCATCARGTTCGTCAATGTGCCCCATGGAAGCGAGTGCGAGTGCTCGGCAGTGCCACTTGAGCAGAATCATTCATGACTTGAAAATTACAATTGTTTCAACGAGTTAAAAATTTATTTATAACAAGCGATTTCTTATGCTTCTTTTACACAGAGAGAATGTTTTTCACAGGAATGTTAAATTTCATAATGTTAATCGGTTAGATGTGTCAAGTTCATGGTTTCGTTCTTCCAGTCATTCGCATCTTCTTCGCCTCCACCACTTGAGGACTCGGTGATCGCGAGCGACTCGTGCTCATCTGAAATTCAAAATTTCTTATGAAAAGTTGAAAAAAGCTAGAAAACCAACCACTTTCTTCGAGATGAGACACGTTTTGCAGTGGTACACAAAGCTCGGTTCGGACGCTTCTTCAACGGAAACGGGCGGCACACTGCATCGCATGTGGAAGCAATCACGGCAGTTTTTACAGGCGAGCACTTGGTTTCCGGCTTGTGAGACACCGCCACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAATCAGCAAAGTCTGTACTCT</pcr_primer_p1>
		<pcr_primer_p2>GTGAAAAACATTCTCTCTGTGTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAATCAGCAAAGTCTGTACTCTGGTGCAGACATCAATTCGAAAAGTGATTCTGGACGATTGTGATGAAGGAGCCGCTGAGAGCATCAAGTTCGTCAATGTGCCCCATGGAAGCGAGTGCGAGTGCTCGGCAGTGCCACTTGAGCAGAATCATTCATGACTTGAAAATTACAATTGTTTCAACGAGTTAAAAATTTATTTATAACAAGCGATTTCTTATGCTTCTTTTACACAGAGAGAATGTTTTTCAC</canonical_amplicon>
		<polymorphic_amplicon>CAAATCAGCAAAGTCTGTACTCTGGTGCAGACATCAATTCGAAAAGTGATTCTGGACGATTGTGATGAAGGAGCCGCTGAGAGCATCARGTTCGTCAATGTGCCCCATGGAAGCGAGTGCGAGTGCTCGGCAGTGCCACTTGAGCAGAATCATTCATGACTTGAAAATTACAATTGTTTCAACGAGTTAAAAATTTATTTATAACAAGCGATTTCTTATGCTTCTTTTACACAGAGAGAATGTTTTTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13219</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>15300</contig_pos>
        <strand></strand>
        <context>AATCATTCAT[G/A]RCTTGAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGGAAGCGAGTGCGAGTGCTCGGCAGTGCCACTTGAGCAGAATCATTCAT</left_flank>
        <right_flank>ACTTGAAAATTACAATTGTTTCAACGAGTTAAAAATTTATTTATAACAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGTCTTGTGCCTGGCTTCAATCCACTTGTCCAAAAAGACGCAGCCGGAAAAGAGTGTCGCGGAAACGTGGAATTACCGTTTTGCAAGGGATACTGTAAGACTAGTGAGGTACGAACTCACAGGGTGCCAACTGCTGCGGTATGCTGTTGCGCTTTAATGAGAAGATGACAAGGCAAAGTAGGCCGTTGAAAATTCAAATTTCTTGCAATTTTCAGCCTTGTCAATAGAGCACAGCTGCATACAACAGCAGTTCGAACTCATTATCAGTGGAGCGCACTTATCTCCATGAAATTCAAAATTCTGAGTTTCAGAGCGGCACTCATGGCTTCCCCCCACGTGTCCAAATCAGCAAAGTCTGTACTCTGGTGCAGACATCAATTCGAAAAGTGATTCTGGACGATTGTGATGAAGGAGCCGCTGAGAGCATCAAGTTCGTCAATGTGCCCCATGGAAGCGAGTGCGAGTGCTCGGCAGTGCCACTTGAGCAGAATCATTCATGACTTGAAAATTACAATTGTTTCAACGAGTTAAAAATTTATTTATAACAAGCGATTTCTTATGCTTCTTTTACACAGAGAGAATGTTTTTCACAGGAATGTTAAATTTCATAATGTTAATCGGTTAGATGTGTCAAGTTCATGGTTTCGTTCTTCCAGTCATTCGCATCTTCTTCGCCTCCACCACTTGAGGACTCGGTGATCGCGAGCGACTCGTGCTCATCTGAAATTCAAAATTTCTTATGAAAAGTTGAAAAAAGCTAGAAAACCAACCACTTTCTTCGAGATGAGACACGTTTTGCAGTGGTACACAAAGCTCGGTTCGGACGCTTCTTCAACGGAAACGGGCGGCACACTGCATCGCATGTGGAAGCAATCACGGCAGTTTTTACAGGCGAGCACTTGGTTTCCGGCTTGTGAGACACCGCCACATGTTTTGCATGGCTGAAAAATCGATTGAGAATTGATGAGCGTCGCCAGGGCGCCGCGGAAGGGAGCCTCA</canonical>
            <polymorphic>GCGTCTTGTGCCTGGCTTCAATCCACTTGTCCAAAAAGACGCAGCCGGAAAAGAGTGTCGCGGAAACGTGGAATTACCGTTTTGCAAGGGATACTGTAAGACTAGTGAGGTACGAACTCACAGGGTGCCAACTGCTGCGGTATGCTGTTGCGCTTTAATGAGAAGATGACAAGGCAAAGTAGGCCGTTGAAAATTCAAATTTCTTGCAATTTTCAGCCTTGTCAATAGAGCACAGCTGCATACAACAGCAGTTCGAACTCATTATCAGTGGAGCGCACTTATCTCCATGAAATTCAAAATTCTGAGTTTCAGAGCGGCACTCATGGCTTCCCCCCACGTGTCCAAATCAGCAAAGTCTGTACTCTGGTGCAGACATCAATTCGAAAAGTGATTCTGGACGATTGTGATGAAGGAGCCGCTGAGAGCATCAAGTTCGTCAATGTGCCCCATGGAAGCGAGTGCGAGTGCTCGGCAGTGCCACTTGAGCAGAATCATTCATRACTTGAAAATTACAATTGTTTCAACGAGTTAAAAATTTATTTATAACAAGCGATTTCTTATGCTTCTTTTACACAGAGAGAATGTTTTTCACAGGAATGTTAAATTTCATAATGTTAATCGGTTAGATGTGTCAAGTTCATGGTTTCGTTCTTCCAGTCATTCGCATCTTCTTCGCCTCCACCACTTGAGGACTCGGTGATCGCGAGCGACTCGTGCTCATCTGAAATTCAAAATTTCTTATGAAAAGTTGAAAAAAGCTAGAAAACCAACCACTTTCTTCGAGATGAGACACGTTTTGCAGTGGTACACAAAGCTCGGTTCGGACGCTTCTTCAACGGAAACGGGCGGCACACTGCATCGCATGTGGAAGCAATCACGGCAGTTTTTACAGGCGAGCACTTGGTTTCCGGCTTGTGAGACACCGCCACATGTTTTGCATGGCTGAAAAATCGATTGAGAATTGATGAGCGTCGCCAGGGCGCCGCGGAAGGGAGCCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>286 223 142 126 67 62 49 36 9</canonical_bands>
                <polymorphic_bands>286 223 191 126 67 62 36 9</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>394 219 205 103 79</canonical_bands>
                <polymorphic_bands>394 308 219 79</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATCAGCAAAGTCTGTACTCT</pcr_primer_p1>
		<pcr_primer_p2>GTGAAAAACATTCTCTCTGTGTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAATCAGCAAAGTCTGTACTCTGGTGCAGACATCAATTCGAAAAGTGATTCTGGACGATTGTGATGAAGGAGCCGCTGAGAGCATCAAGTTCGTCAATGTGCCCCATGGAAGCGAGTGCGAGTGCTCGGCAGTGCCACTTGAGCAGAATCATTCATGACTTGAAAATTACAATTGTTTCAACGAGTTAAAAATTTATTTATAACAAGCGATTTCTTATGCTTCTTTTACACAGAGAGAATGTTTTTCAC</canonical_amplicon>
		<polymorphic_amplicon>CAAATCAGCAAAGTCTGTACTCTGGTGCAGACATCAATTCGAAAAGTGATTCTGGACGATTGTGATGAAGGAGCCGCTGAGAGCATCAAGTTCGTCAATGTGCCCCATGGAAGCGAGTGCGAGTGCTCGGCAGTGCCACTTGAGCAGAATCATTCATRACTTGAAAATTACAATTGTTTCAACGAGTTAAAAATTTATTTATAACAAGCGATTTCTTATGCTTCTTTTACACAGAGAGAATGTTTTTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13220</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>15329</contig_pos>
        <strand>+</strand>
        <context>TTTCAACGAG[A/T]TAAAAATTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CACTTGAGCAGAATCATTCATGACTTGAAAATTACAATTGTTTCAACGAG</left_flank>
        <right_flank>TAAAAATTTATTTATAACAAGCGATTTCTTATGCTTCTTTTACACAGAGA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAAAAAGACGCAGCCGGAAAAGAGTGTCGCGGAAACGTGGAATTACCGTTTTGCAAGGGATACTGTAAGACTAGTGAGGTACGAACTCACAGGGTGCCAACTGCTGCGGTATGCTGTTGCGCTTTAATGAGAAGATGACAAGGCAAAGTAGGCCGTTGAAAATTCAAATTTCTTGCAATTTTCAGCCTTGTCAATAGAGCACAGCTGCATACAACAGCAGTTCGAACTCATTATCAGTGGAGCGCACTTATCTCCATGAAATTCAAAATTCTGAGTTTCAGAGCGGCACTCATGGCTTCCCCCCACGTGTCCAAATCAGCAAAGTCTGTACTCTGGTGCAGACATCAATTCGAAAAGTGATTCTGGACGATTGTGATGAAGGAGCCGCTGAGAGCATCAAGTTCGTCAATGTGCCCCATGGAAGCGAGTGCGAGTGCTCGGCAGTGCCACTTGAGCAGAATCATTCATGACTTGAAAATTACAATTGTTTCAACGAGTTAAAAATTTATTTATAACAAGCGATTTCTTATGCTTCTTTTACACAGAGAGAATGTTTTTCACAGGAATGTTAAATTTCATAATGTTAATCGGTTAGATGTGTCAAGTTCATGGTTTCGTTCTTCCAGTCATTCGCATCTTCTTCGCCTCCACCACTTGAGGACTCGGTGATCGCGAGCGACTCGTGCTCATCTGAAATTCAAAATTTCTTATGAAAAGTTGAAAAAAGCTAGAAAACCAACCACTTTCTTCGAGATGAGACACGTTTTGCAGTGGTACACAAAGCTCGGTTCGGACGCTTCTTCAACGGAAACGGGCGGCACACTGCATCGCATGTGGAAGCAATCACGGCAGTTTTTACAGGCGAGCACTTGGTTTCCGGCTTGTGAGACACCGCCACATGTTTTGCATGGCTGAAAAATCGATTGAGAATTGATGAGCGTCGCCAGGGCGCCGCGGAAGGGAGCCTCAAAGTTTAGACGCGCGGCGCGATCGTGTCG</canonical>
            <polymorphic>TCCAAAAAGACGCAGCCGGAAAAGAGTGTCGCGGAAACGTGGAATTACCGTTTTGCAAGGGATACTGTAAGACTAGTGAGGTACGAACTCACAGGGTGCCAACTGCTGCGGTATGCTGTTGCGCTTTAATGAGAAGATGACAAGGCAAAGTAGGCCGTTGAAAATTCAAATTTCTTGCAATTTTCAGCCTTGTCAATAGAGCACAGCTGCATACAACAGCAGTTCGAACTCATTATCAGTGGAGCGCACTTATCTCCATGAAATTCAAAATTCTGAGTTTCAGAGCGGCACTCATGGCTTCCCCCCACGTGTCCAAATCAGCAAAGTCTGTACTCTGGTGCAGACATCAATTCGAAAAGTGATTCTGGACGATTGTGATGAAGGAGCCGCTGAGAGCATCAAGTTCGTCAATGTGCCCCATGGAAGCGAGTGCGAGTGCTCGGCAGTGCCACTTGAGCAGAATCATTCATGACTTGAAAATTACAATTGTTTCAACGAGWTAAAAATTTATTTATAACAAGCGATTTCTTATGCTTCTTTTACACAGAGAGAATGTTTTTCACAGGAATGTTAAATTTCATAATGTTAATCGGTTAGATGTGTCAAGTTCATGGTTTCGTTCTTCCAGTCATTCGCATCTTCTTCGCCTCCACCACTTGAGGACTCGGTGATCGCGAGCGACTCGTGCTCATCTGAAATTCAAAATTTCTTATGAAAAGTTGAAAAAAGCTAGAAAACCAACCACTTTCTTCGAGATGAGACACGTTTTGCAGTGGTACACAAAGCTCGGTTCGGACGCTTCTTCAACGGAAACGGGCGGCACACTGCATCGCATGTGGAAGCAATCACGGCAGTTTTTACAGGCGAGCACTTGGTTTCCGGCTTGTGAGACACCGCCACATGTTTTGCATGGCTGAAAAATCGATTGAGAATTGATGAGCGTCGCCAGGGCGCCGCGGAAGGGAGCCTCAAAGTTTAGACGCGCGGCGCGATCGTGTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>414 374 126 71 15</canonical_bands>
                <polymorphic_bands>445 414 126 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATCAGCAAAGTCTGTACTCT</pcr_primer_p1>
		<pcr_primer_p2>GTGAAAAACATTCTCTCTGTGTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAATCAGCAAAGTCTGTACTCTGGTGCAGACATCAATTCGAAAAGTGATTCTGGACGATTGTGATGAAGGAGCCGCTGAGAGCATCAAGTTCGTCAATGTGCCCCATGGAAGCGAGTGCGAGTGCTCGGCAGTGCCACTTGAGCAGAATCATTCATGACTTGAAAATTACAATTGTTTCAACGAGTTAAAAATTTATTTATAACAAGCGATTTCTTATGCTTCTTTTACACAGAGAGAATGTTTTTCAC</canonical_amplicon>
		<polymorphic_amplicon>CAAATCAGCAAAGTCTGTACTCTGGTGCAGACATCAATTCGAAAAGTGATTCTGGACGATTGTGATGAAGGAGCCGCTGAGAGCATCAAGTTCGTCAATGTGCCCCATGGAAGCGAGTGCGAGTGCTCGGCAGTGCCACTTGAGCAGAATCATTCATGACTTGAAAATTACAATTGTTTCAACGAGWTAAAAATTTATTTATAACAAGCGATTTCTTATGCTTCTTTTACACAGAGAGAATGTTTTTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13221</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>18180</contig_pos>
        <strand>+</strand>
        <context>AGCCAAAAAT[A/C]TTTTAAAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAGTATTGCCTCAAAATCAACTGAATTTGTGGCATTTTCAGCCAAAAAT</left_flank>
        <right_flank>TTTTAAAAAGGCTATTTTTGGGCTCAAAATTCCAGATTTTCTATAGCAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGCTGGTGGGCGTGGCCAAAGGTCCCACAACGACAACTACAGTAACCCAAAAATATGTTTTTTCAGAATTTTTTTCACTGCTGTGACGACCAAGAAAAATTTGAAGCTTAAAAAATCAGAAATTTGGATATTTTGAGTCCAAAAAATCACTAATTAAAAAAAAATTAGGAAAAATCCCAATTTTCTCAAAATCAACCGAATTAGGGTAAATTTCAGCCAAAAAATCTTTTAAAAAGGCAATTTTTGCCTCAAAATTCCTAATTTTGACTAGAAAAAAACACAAATTTTTGAAAAAAATTAATACAAAAAATCCTAATTATTGCCTCAAAATCAGCCGAATTTGGGTCGGTTTCAGCTGAAAAATAGTTAAAAAATGTCTTTTTTGACTCAAAATCCGAAATTATAGATGATTTTGAATCGAAAAATCACTATTTTTGAGAAAAAATCCAAAGTATTGCCTCAAAATCAACTGAATTTGTGGCATTTTCAGCCAAAAATATTTTAAAAAGGCTATTTTTGGGCTCAAAATTCCAGATTTTCTATAGCAAAAAAAAAGGCAAGTTTTTAAGGAAAAAATGAGAAAAAAAGGAAAAAAAAATACTTTAGGTTACTGTAGCTGTCCTTGTGAGACCCAGAATAATAGGAAAAAAAATCGAGATAATAATAATCTGTTCAGGAACAGAAATCAGGTTTAGAAGGAAAGTTTCAAAAAGAAATTCAAAGAAAAATATATTATTTTGAACAAAAATATATCAAAGGAACAAAAAAGCAAAACAAGAAACAAAGGATCTTCTACGATCTCTACCAAAAAAATCTGAAAATCTAATCCAAAAAATATATTTTCCTCTTATTTCCCTCTTTGCTGCAAACGCTTCCTCTCGTCCTGCCCCTTTCGAATCGCTTCCTTGAACATTCTCAATAGGTATTCTGTGGATTGCGGGGTGTCGTCGTTGGCTGGAATCAAGTATGTCAGATAGGCGGGATCCGAGTTCGAGTCGA</canonical>
            <polymorphic>GAGCTGGTGGGCGTGGCCAAAGGTCCCACAACGACAACTACAGTAACCCAAAAATATGTTTTTTCAGAATTTTTTTCACTGCTGTGACGACCAAGAAAAATTTGAAGCTTAAAAAATCAGAAATTTGGATATTTTGAGTCCAAAAAATCACTAATTAAAAAAAAATTAGGAAAAATCCCAATTTTCTCAAAATCAACCGAATTAGGGTAAATTTCAGCCAAAAAATCTTTTAAAAAGGCAATTTTTGCCTCAAAATTCCTAATTTTGACTAGAAAAAAACACAAATTTTTGAAAAAAATTAATACAAAAAATCCTAATTATTGCCTCAAAATCAGCCGAATTTGGGTCGGTTTCAGCTGAAAAATAGTTAAAAAATGTCTTTTTTGACTCAAAATCCGAAATTATAGATGATTTTGAATCGAAAAATCACTATTTTTGAGAAAAAATCCAAAGTATTGCCTCAAAATCAACTGAATTTGTGGCATTTTCAGCCAAAAATMTTTTAAAAAGGCTATTTTTGGGCTCAAAATTCCAGATTTTCTATAGCAAAAAAAAAGGCAAGTTTTTAAGGAAAAAATGAGAAAAAAAGGAAAAAAAAATACTTTAGGTTACTGTAGCTGTCCTTGTGAGACCCAGAATAATAGGAAAAAAAATCGAGATAATAATAATCTGTTCAGGAACAGAAATCAGGTTTAGAAGGAAAGTTTCAAAAAGAAATTCAAAGAAAAATATATTATTTTGAACAAAAATATATCAAAGGAACAAAAAAGCAAAACAAGAAACAAAGGATCTTCTACGATCTCTACCAAAAAAATCTGAAAATCTAATCCAAAAAATATATTTTCCTCTTATTTCCCTCTTTGCTGCAAACGCTTCCTCTCGTCCTGCCCCTTTCGAATCGCTTCCTTGAACATTCTCAATAGGTATTCTGTGGATTGCGGGGTGTCGTCGTTGGCTGGAATCAAGTATGTCAGATAGGCGGGATCCGAGTTCGAGTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAAGTATTGCCTCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTCTAAACCTGATTTCTGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCAAAGTATTGCCTCAAAATCAACTGAATTTGTGGCATTTTCAGCCAAAAATATTTTAAAAAGGCTATTTTTGGGCTCAAAATTCCAGATTTTCTATAGCAAAAAAAAAGGCAAGTTTTTAAGGAAAAAATGAGAAAAAAAGGAAAAAAAAATACTTTAGGTTACTGTAGCTGTCCTTGTGAGACCCAGAATAATAGGAAAAAAAATCGAGATAATAATAATCTGTTCAGGAACAGAAATCAGGTTTAGAA</canonical_amplicon>
		<polymorphic_amplicon>CCAAAGTATTGCCTCAAAATCAACTGAATTTGTGGCATTTTCAGCCAAAAATMTTTTAAAAAGGCTATTTTTGGGCTCAAAATTCCAGATTTTCTATAGCAAAAAAAAAGGCAAGTTTTTAAGGAAAAAATGAGAAAAAAAGGAAAAAAAAATACTTTAGGTTACTGTAGCTGTCCTTGTGAGACCCAGAATAATAGGAAAAAAAATCGAGATAATAATAATCTGTTCAGGAACAGAAATCAGGTTTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13222</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>18149</contig_pos>
        <strand></strand>
        <context>CCTCAAAATC[A/C]ACTGAATTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCGAAAAATCACTATTTTTGAGAAAAAATCCAAAGTATTGCCTCAAAATC</left_flank>
        <right_flank>ACTGAATTTGTGGCATTTTCAGCCAAAAATATTTTAAAAAGGCTATTTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGTCGTGATAGCATCTGGAAAAAAAGAGGGAGCTGGTGGGCGTGGCCAAAGGTCCCACAACGACAACTACAGTAACCCAAAAATATGTTTTTTCAGAATTTTTTTCACTGCTGTGACGACCAAGAAAAATTTGAAGCTTAAAAAATCAGAAATTTGGATATTTTGAGTCCAAAAAATCACTAATTAAAAAAAAATTAGGAAAAATCCCAATTTTCTCAAAATCAACCGAATTAGGGTAAATTTCAGCCAAAAAATCTTTTAAAAAGGCAATTTTTGCCTCAAAATTCCTAATTTTGACTAGAAAAAAACACAAATTTTTGAAAAAAATTAATACAAAAAATCCTAATTATTGCCTCAAAATCAGCCGAATTTGGGTCGGTTTCAGCTGAAAAATAGTTAAAAAATGTCTTTTTTGACTCAAAATCCGAAATTATAGATGATTTTGAATCGAAAAATCACTATTTTTGAGAAAAAATCCAAAGTATTGCCTCAAAATCAACTGAATTTGTGGCATTTTCAGCCAAAAATATTTTAAAAAGGCTATTTTTGGGCTCAAAATTCCAGATTTTCTATAGCAAAAAAAAAGGCAAGTTTTTAAGGAAAAAATGAGAAAAAAAGGAAAAAAAAATACTTTAGGTTACTGTAGCTGTCCTTGTGAGACCCAGAATAATAGGAAAAAAAATCGAGATAATAATAATCTGTTCAGGAACAGAAATCAGGTTTAGAAGGAAAGTTTCAAAAAGAAATTCAAAGAAAAATATATTATTTTGAACAAAAATATATCAAAGGAACAAAAAAGCAAAACAAGAAACAAAGGATCTTCTACGATCTCTACCAAAAAAATCTGAAAATCTAATCCAAAAAATATATTTTCCTCTTATTTCCCTCTTTGCTGCAAACGCTTCCTCTCGTCCTGCCCCTTTCGAATCGCTTCCTTGAACATTCTCAATAGGTATTCTGTGGATTGCGGGGTGTCGTCGTTGGCTGGAATCAAGTAT</canonical>
            <polymorphic>ATTGTCGTGATAGCATCTGGAAAAAAAGAGGGAGCTGGTGGGCGTGGCCAAAGGTCCCACAACGACAACTACAGTAACCCAAAAATATGTTTTTTCAGAATTTTTTTCACTGCTGTGACGACCAAGAAAAATTTGAAGCTTAAAAAATCAGAAATTTGGATATTTTGAGTCCAAAAAATCACTAATTAAAAAAAAATTAGGAAAAATCCCAATTTTCTCAAAATCAACCGAATTAGGGTAAATTTCAGCCAAAAAATCTTTTAAAAAGGCAATTTTTGCCTCAAAATTCCTAATTTTGACTAGAAAAAAACACAAATTTTTGAAAAAAATTAATACAAAAAATCCTAATTATTGCCTCAAAATCAGCCGAATTTGGGTCGGTTTCAGCTGAAAAATAGTTAAAAAATGTCTTTTTTGACTCAAAATCCGAAATTATAGATGATTTTGAATCGAAAAATCACTATTTTTGAGAAAAAATCCAAAGTATTGCCTCAAAATCMACTGAATTTGTGGCATTTTCAGCCAAAAATATTTTAAAAAGGCTATTTTTGGGCTCAAAATTCCAGATTTTCTATAGCAAAAAAAAAGGCAAGTTTTTAAGGAAAAAATGAGAAAAAAAGGAAAAAAAAATACTTTAGGTTACTGTAGCTGTCCTTGTGAGACCCAGAATAATAGGAAAAAAAATCGAGATAATAATAATCTGTTCAGGAACAGAAATCAGGTTTAGAAGGAAAGTTTCAAAAAGAAATTCAAAGAAAAATATATTATTTTGAACAAAAATATATCAAAGGAACAAAAAAGCAAAACAAGAAACAAAGGATCTTCTACGATCTCTACCAAAAAAATCTGAAAATCTAATCCAAAAAATATATTTTCCTCTTATTTCCCTCTTTGCTGCAAACGCTTCCTCTCGTCCTGCCCCTTTCGAATCGCTTCCTTGAACATTCTCAATAGGTATTCTGTGGATTGCGGGGTGTCGTCGTTGGCTGGAATCAAGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTGAATCGAAAAATCACTA</pcr_primer_p1>
		<pcr_primer_p2>TTCTAAACCTGATTTCTGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>GATTTTGAATCGAAAAATCACTATTTTTGAGAAAAAATCCAAAGTATTGCCTCAAAATCAACTGAATTTGTGGCATTTTCAGCCAAAAATATTTTAAAAAGGCTATTTTTGGGCTCAAAATTCCAGATTTTCTATAGCAAAAAAAAAGGCAAGTTTTTAAGGAAAAAATGAGAAAAAAAGGAAAAAAAAATACTTTAGGTTACTGTAGCTGTCCTTGTGAGACCCAGAATAATAGGAAAAAAAATCGAGATAATAATAATCTGTTCAGGAACAGAAATCAGGTTTAGAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTGAATCGAAAAATCACTATTTTTGAGAAAAAATCCAAAGTATTGCCTCAAAATCMACTGAATTTGTGGCATTTTCAGCCAAAAATATTTTAAAAAGGCTATTTTTGGGCTCAAAATTCCAGATTTTCTATAGCAAAAAAAAAGGCAAGTTTTTAAGGAAAAAATGAGAAAAAAAGGAAAAAAAAATACTTTAGGTTACTGTAGCTGTCCTTGTGAGACCCAGAATAATAGGAAAAAAAATCGAGATAATAATAATCTGTTCAGGAACAGAAATCAGGTTTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13223</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>18120</contig_pos>
        <strand>+</strand>
        <context>CTATTTTTGM[A/G]AAAAAATCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAAATCCGAAATTATAGATGATTTTGAATCGAAAAATCACTATTTTTGA</left_flank>
        <right_flank>AAAAAATCCAAAGTATTGCCTCAAAATCAACTGAATTTGTGGCATTTTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGGCTCGATTTGATATTAGCAGGCGGAATTGTCGTGATAGCATCTGGAAAAAAAGAGGGAGCTGGTGGGCGTGGCCAAAGGTCCCACAACGACAACTACAGTAACCCAAAAATATGTTTTTTCAGAATTTTTTTCACTGCTGTGACGACCAAGAAAAATTTGAAGCTTAAAAAATCAGAAATTTGGATATTTTGAGTCCAAAAAATCACTAATTAAAAAAAAATTAGGAAAAATCCCAATTTTCTCAAAATCAACCGAATTAGGGTAAATTTCAGCCAAAAAATCTTTTAAAAAGGCAATTTTTGCCTCAAAATTCCTAATTTTGACTAGAAAAAAACACAAATTTTTGAAAAAAATTAATACAAAAAATCCTAATTATTGCCTCAAAATCAGCCGAATTTGGGTCGGTTTCAGCTGAAAAATAGTTAAAAAATGTCTTTTTTGACTCAAAATCCGAAATTATAGATGATTTTGAATCGAAAAATCACTATTTTTGAGAAAAAATCCAAAGTATTGCCTCAAAATCAACTGAATTTGTGGCATTTTCAGCCAAAAATATTTTAAAAAGGCTATTTTTGGGCTCAAAATTCCAGATTTTCTATAGCAAAAAAAAAGGCAAGTTTTTAAGGAAAAAATGAGAAAAAAAGGAAAAAAAAATACTTTAGGTTACTGTAGCTGTCCTTGTGAGACCCAGAATAATAGGAAAAAAAATCGAGATAATAATAATCTGTTCAGGAACAGAAATCAGGTTTAGAAGGAAAGTTTCAAAAAGAAATTCAAAGAAAAATATATTATTTTGAACAAAAATATATCAAAGGAACAAAAAAGCAAAACAAGAAACAAAGGATCTTCTACGATCTCTACCAAAAAAATCTGAAAATCTAATCCAAAAAATATATTTTCCTCTTATTTCCCTCTTTGCTGCAAACGCTTCCTCTCGTCCTGCCCCTTTCGAATCGCTTCCTTGAACATTCTCAATAGGTATTCTGTGGATTGCG</canonical>
            <polymorphic>GAAGGCTCGATTTGATATTAGCAGGCGGAATTGTCGTGATAGCATCTGGAAAAAAAGAGGGAGCTGGTGGGCGTGGCCAAAGGTCCCACAACGACAACTACAGTAACCCAAAAATATGTTTTTTCAGAATTTTTTTCACTGCTGTGACGACCAAGAAAAATTTGAAGCTTAAAAAATCAGAAATTTGGATATTTTGAGTCCAAAAAATCACTAATTAAAAAAAAATTAGGAAAAATCCCAATTTTCTCAAAATCAACCGAATTAGGGTAAATTTCAGCCAAAAAATCTTTTAAAAAGGCAATTTTTGCCTCAAAATTCCTAATTTTGACTAGAAAAAAACACAAATTTTTGAAAAAAATTAATACAAAAAATCCTAATTATTGCCTCAAAATCAGCCGAATTTGGGTCGGTTTCAGCTGAAAAATAGTTAAAAAATGTCTTTTTTGACTCAAAATCCGAAATTATAGATGATTTTGAATCGAAAAATCACTATTTTTGARAAAAAATCCAAAGTATTGCCTCAAAATCAACTGAATTTGTGGCATTTTCAGCCAAAAATATTTTAAAAAGGCTATTTTTGGGCTCAAAATTCCAGATTTTCTATAGCAAAAAAAAAGGCAAGTTTTTAAGGAAAAAATGAGAAAAAAAGGAAAAAAAAATACTTTAGGTTACTGTAGCTGTCCTTGTGAGACCCAGAATAATAGGAAAAAAAATCGAGATAATAATAATCTGTTCAGGAACAGAAATCAGGTTTAGAAGGAAAGTTTCAAAAAGAAATTCAAAGAAAAATATATTATTTTGAACAAAAATATATCAAAGGAACAAAAAAGCAAAACAAGAAACAAAGGATCTTCTACGATCTCTACCAAAAAAATCTGAAAATCTAATCCAAAAAATATATTTTCCTCTTATTTCCCTCTTTGCTGCAAACGCTTCCTCTCGTCCTGCCCCTTTCGAATCGCTTCCTTGAACATTCTCAATAGGTATTCTGTGGATTGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAAAATCCGAAATTATAGATG</pcr_primer_p1>
		<pcr_primer_p2>TTCTAAACCTGATTTCTGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>CTCAAAATCCGAAATTATAGATGATTTTGAATCGAAAAATCACTATTTTTGAGAAAAAATCCAAAGTATTGCCTCAAAATCAACTGAATTTGTGGCATTTTCAGCCAAAAATATTTTAAAAAGGCTATTTTTGGGCTCAAAATTCCAGATTTTCTATAGCAAAAAAAAAGGCAAGTTTTTAAGGAAAAAATGAGAAAAAAAGGAAAAAAAAATACTTTAGGTTACTGTAGCTGTCCTTGTGAGACCCAGAATAATAGGAAAAAAAATCGAGATAATAATAATCTGTTCAGGAACAGAAATCAGGTTTAGAA</canonical_amplicon>
		<polymorphic_amplicon>CTCAAAATCCGAAATTATAGATGATTTTGAATCGAAAAATCACTATTTTTGARAAAAAATCCAAAGTATTGCCTCAAAATCAACTGAATTTGTGGCATTTTCAGCCAAAAATATTTTAAAAAGGCTATTTTTGGGCTCAAAATTCCAGATTTTCTATAGCAAAAAAAAAGGCAAGTTTTTAAGGAAAAAATGAGAAAAAAAGGAAAAAAAAATACTTTAGGTTACTGTAGCTGTCCTTGTGAGACCCAGAATAATAGGAAAAAAAATCGAGATAATAATAATCTGTTCAGGAACAGAAATCAGGTTTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13224</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>18017</contig_pos>
        <strand>+</strand>
        <context>CAAAATCAGC[A/C]GAATTTGGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTGAAAAAAATTAATACAAAAAATCCTAATTATTGCCTCAAAATCAGC</left_flank>
        <right_flank>GAATTTGGGTCGGTTTCAGCTGAAAAATAGTTAAAAAATGTCTTTTTTGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGAGACCCATGCTTGTGGAGTTTTGACGAACGGCGATTCGGGTTTTCGCCACAGTTCTCTACGGGTGTCAGTGGATGACGTGGCATCTTGGACGGCGGCCGAGAAGGCTCGATTTGATATTAGCAGGCGGAATTGTCGTGATAGCATCTGGAAAAAAAGAGGGAGCTGGTGGGCGTGGCCAAAGGTCCCACAACGACAACTACAGTAACCCAAAAATATGTTTTTTCAGAATTTTTTTCACTGCTGTGACGACCAAGAAAAATTTGAAGCTTAAAAAATCAGAAATTTGGATATTTTGAGTCCAAAAAATCACTAATTAAAAAAAAATTAGGAAAAATCCCAATTTTCTCAAAATCAACCGAATTAGGGTAAATTTCAGCCAAAAAATCTTTTAAAAAGGCAATTTTTGCCTCAAAATTCCTAATTTTGACTAGAAAAAAACACAAATTTTTGAAAAAAATTAATACAAAAAATCCTAATTATTGCCTCAAAATCAGCCGAATTTGGGTCGGTTTCAGCTGAAAAATAGTTAAAAAATGTCTTTTTTGACTCAAAATCCGAAATTATAGATGATTTTGAATCGAAAAATCACTATTTTTGAGAAAAAATCCAAAGTATTGCCTCAAAATCAACTGAATTTGTGGCATTTTCAGCCAAAAATATTTTAAAAAGGCTATTTTTGGGCTCAAAATTCCAGATTTTCTATAGCAAAAAAAAAGGCAAGTTTTTAAGGAAAAAATGAGAAAAAAAGGAAAAAAAAATACTTTAGGTTACTGTAGCTGTCCTTGTGAGACCCAGAATAATAGGAAAAAAAATCGAGATAATAATAATCTGTTCAGGAACAGAAATCAGGTTTAGAAGGAAAGTTTCAAAAAGAAATTCAAAGAAAAATATATTATTTTGAACAAAAATATATCAAAGGAACAAAAAAGCAAAACAAGAAACAAAGGATCTTCTACGATCTCTACCAAAAAAATCTGAAAATCTAATCCAAAAAAT</canonical>
            <polymorphic>TAGAGACCCATGCTTGTGGAGTTTTGACGAACGGCGATTCGGGTTTTCGCCACAGTTCTCTACGGGTGTCAGTGGATGACGTGGCATCTTGGACGGCGGCCGAGAAGGCTCGATTTGATATTAGCAGGCGGAATTGTCGTGATAGCATCTGGAAAAAAAGAGGGAGCTGGTGGGCGTGGCCAAAGGTCCCACAACGACAACTACAGTAACCCAAAAATATGTTTTTTCAGAATTTTTTTCACTGCTGTGACGACCAAGAAAAATTTGAAGCTTAAAAAATCAGAAATTTGGATATTTTGAGTCCAAAAAATCACTAATTAAAAAAAAATTAGGAAAAATCCCAATTTTCTCAAAATCAACCGAATTAGGGTAAATTTCAGCCAAAAAATCTTTTAAAAAGGCAATTTTTGCCTCAAAATTCCTAATTTTGACTAGAAAAAAACACAAATTTTTGAAAAAAATTAATACAAAAAATCCTAATTATTGCCTCAAAATCAGCMGAATTTGGGTCGGTTTCAGCTGAAAAATAGTTAAAAAATGTCTTTTTTGACTCAAAATCCGAAATTATAGATGATTTTGAATCGAAAAATCACTATTTTTGAGAAAAAATCCAAAGTATTGCCTCAAAATCAACTGAATTTGTGGCATTTTCAGCCAAAAATATTTTAAAAAGGCTATTTTTGGGCTCAAAATTCCAGATTTTCTATAGCAAAAAAAAAGGCAAGTTTTTAAGGAAAAAATGAGAAAAAAAGGAAAAAAAAATACTTTAGGTTACTGTAGCTGTCCTTGTGAGACCCAGAATAATAGGAAAAAAAATCGAGATAATAATAATCTGTTCAGGAACAGAAATCAGGTTTAGAAGGAAAGTTTCAAAAAGAAATTCAAAGAAAAATATATTATTTTGAACAAAAATATATCAAAGGAACAAAAAAGCAAAACAAGAAACAAAGGATCTTCTACGATCTCTACCAAAAAAATCTGAAAATCTAATCCAAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>495 366 139</canonical_bands>
                <polymorphic_bands>634 366</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>220 135 118 110 99 95 91 58 21 20 13 11 9</canonical_bands>
                <polymorphic_bands>220 139 135 110 99 95 91 58 20 13 11 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCAATTTTCTCAAAATCAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCGATTCAAAATCATCTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCCAATTTTCTCAAAATCAACCGAATTAGGGTAAATTTCAGCCAAAAAATCTTTTAAAAAGGCAATTTTTGCCTCAAAATTCCTAATTTTGACTAGAAAAAAACACAAATTTTTGAAAAAAATTAATACAAAAAATCCTAATTATTGCCTCAAAATCAGCCGAATTTGGGTCGGTTTCAGCTGAAAAATAGTTAAAAAATGTCTTTTTTGACTCAAAATCCGAAATTATAGATGATTTTGAATCGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CCCAATTTTCTCAAAATCAACCGAATTAGGGTAAATTTCAGCCAAAAAATCTTTTAAAAAGGCAATTTTTGCCTCAAAATTCCTAATTTTGACTAGAAAAAAACACAAATTTTTGAAAAAAATTAATACAAAAAATCCTAATTATTGCCTCAAAATCAGCMGAATTTGGGTCGGTTTCAGCTGAAAAATAGTTAAAAAATGTCTTTTTTGACTCAAAATCCGAAATTATAGATGATTTTGAATCGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13229</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>17941</contig_pos>
        <strand>+</strand>
        <context>CAAAATTCCT[A/G]ATTTTGACTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTCAGCCAAAAAATCTTTTAAAAAGGCAATTTTTGCCTCAAAATTCCT</left_flank>
        <right_flank>ATTTTGACTAGAAAAAAACACAAATTTTTGAAAAAAATTAATACAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATACGTGGCGTTGTTCTGAAGATATCCGGATGGAGATCCACGAGTCCGAGCTTCTCGTCTTCAACAGTTTCGAGGCTAGAGACCCATGCTTGTGGAGTTTTGACGAACGGCGATTCGGGTTTTCGCCACAGTTCTCTACGGGTGTCAGTGGATGACGTGGCATCTTGGACGGCGGCCGAGAAGGCTCGATTTGATATTAGCAGGCGGAATTGTCGTGATAGCATCTGGAAAAAAAGAGGGAGCTGGTGGGCGTGGCCAAAGGTCCCACAACGACAACTACAGTAACCCAAAAATATGTTTTTTCAGAATTTTTTTCACTGCTGTGACGACCAAGAAAAATTTGAAGCTTAAAAAATCAGAAATTTGGATATTTTGAGTCCAAAAAATCACTAATTAAAAAAAAATTAGGAAAAATCCCAATTTTCTCAAAATCAACCGAATTAGGGTAAATTTCAGCCAAAAAATCTTTTAAAAAGGCAATTTTTGCCTCAAAATTCCTAATTTTGACTAGAAAAAAACACAAATTTTTGAAAAAAATTAATACAAAAAATCCTAATTATTGCCTCAAAATCAGCCGAATTTGGGTCGGTTTCAGCTGAAAAATAGTTAAAAAATGTCTTTTTTGACTCAAAATCCGAAATTATAGATGATTTTGAATCGAAAAATCACTATTTTTGAGAAAAAATCCAAAGTATTGCCTCAAAATCAACTGAATTTGTGGCATTTTCAGCCAAAAATATTTTAAAAAGGCTATTTTTGGGCTCAAAATTCCAGATTTTCTATAGCAAAAAAAAAGGCAAGTTTTTAAGGAAAAAATGAGAAAAAAAGGAAAAAAAAATACTTTAGGTTACTGTAGCTGTCCTTGTGAGACCCAGAATAATAGGAAAAAAAATCGAGATAATAATAATCTGTTCAGGAACAGAAATCAGGTTTAGAAGGAAAGTTTCAAAAAGAAATTCAAAGAAAAATATATTATTTTGAACAAAAATATATCAAAGGA</canonical>
            <polymorphic>ATACGTGGCGTTGTTCTGAAGATATCCGGATGGAGATCCACGAGTCCGAGCTTCTCGTCTTCAACAGTTTCGAGGCTAGAGACCCATGCTTGTGGAGTTTTGACGAACGGCGATTCGGGTTTTCGCCACAGTTCTCTACGGGTGTCAGTGGATGACGTGGCATCTTGGACGGCGGCCGAGAAGGCTCGATTTGATATTAGCAGGCGGAATTGTCGTGATAGCATCTGGAAAAAAAGAGGGAGCTGGTGGGCGTGGCCAAAGGTCCCACAACGACAACTACAGTAACCCAAAAATATGTTTTTTCAGAATTTTTTTCACTGCTGTGACGACCAAGAAAAATTTGAAGCTTAAAAAATCAGAAATTTGGATATTTTGAGTCCAAAAAATCACTAATTAAAAAAAAATTAGGAAAAATCCCAATTTTCTCAAAATCAACCGAATTAGGGTAAATTTCAGCCAAAAAATCTTTTAAAAAGGCAATTTTTGCCTCAAAATTCCTRATTTTGACTAGAAAAAAACACAAATTTTTGAAAAAAATTAATACAAAAAATCCTAATTATTGCCTCAAAATCAGCCGAATTTGGGTCGGTTTCAGCTGAAAAATAGTTAAAAAATGTCTTTTTTGACTCAAAATCCGAAATTATAGATGATTTTGAATCGAAAAATCACTATTTTTGAGAAAAAATCCAAAGTATTGCCTCAAAATCAACTGAATTTGTGGCATTTTCAGCCAAAAATATTTTAAAAAGGCTATTTTTGGGCTCAAAATTCCAGATTTTCTATAGCAAAAAAAAAGGCAAGTTTTTAAGGAAAAAATGAGAAAAAAAGGAAAAAAAAATACTTTAGGTTACTGTAGCTGTCCTTGTGAGACCCAGAATAATAGGAAAAAAAATCGAGATAATAATAATCTGTTCAGGAACAGAAATCAGGTTTAGAAGGAAAGTTTCAAAAAGAAATTCAAAGAAAAATATATTATTTTGAACAAAAATATATCAAAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>207 188 99 74 61 54 46 31 31 30 23 23 23 20 19 16 14 13 11 10 7</canonical_bands>
                <polymorphic_bands>207 188 99 74 61 54 46 31 31 30 30 23 23 20 19 16 14 13 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCAATTTTCTCAAAATCAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCGATTCAAAATCATCTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCCAATTTTCTCAAAATCAACCGAATTAGGGTAAATTTCAGCCAAAAAATCTTTTAAAAAGGCAATTTTTGCCTCAAAATTCCTAATTTTGACTAGAAAAAAACACAAATTTTTGAAAAAAATTAATACAAAAAATCCTAATTATTGCCTCAAAATCAGCCGAATTTGGGTCGGTTTCAGCTGAAAAATAGTTAAAAAATGTCTTTTTTGACTCAAAATCCGAAATTATAGATGATTTTGAATCGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CCCAATTTTCTCAAAATCAACCGAATTAGGGTAAATTTCAGCCAAAAAATCTTTTAAAAAGGCAATTTTTGCCTCAAAATTCCTRATTTTGACTAGAAAAAAACACAAATTTTTGAAAAAAATTAATACAAAAAATCCTAATTATTGCCTCAAAATCAGCCGAATTTGGGTCGGTTTCAGCTGAAAAATAGTTAAAAAATGTCTTTTTTGACTCAAAATCCGAAATTATAGATGATTTTGAATCGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13240</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>56048</contig_pos>
        <strand>+</strand>
        <context>TCCCCGACGC[C/T]TTCAGAAGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACAGCTCCACCTGGCCATCTACCAAGCACTCCACTTGCCTCCCCGACGC</left_flank>
        <right_flank>TTCAGAAGAGCCTCTTCTGGACCAACATCCCGAATGGATTCAGAATCCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAGTGCAAACCATCAAAGAACGGGGATTAAAGGTGTATCCCGACGACAAAAAAAAATTATTTGTTGATTTTCTAAGTTTAAAGCAAACATTCAAACATAAAACTCCACAAATGGACATGCCAATGAGTGTTTGATATTACCCACCCCACAGAGAGGACTACTGTACCACTCGCCTCTCGGTATAAATACACAGAAACGCGTAGACATAGAGCACAGTCGGAACGAAACGAAATTTCTTTGTCATGGTGGTGCGTACTACAAGCAAAAATGAGTTGGCGAGAAAGGGTAAGTCATAGATTTTGTGTTTTTCCTTGTTTATCTATTGTATCATGTCCCTTTAAATAAATGCAGCTGACAATATTCTGAATATTCTAGAAGAATCCTAATTCAATGCTTTTAGAACCTCTCCGCGAGAAAGATTCCATTGTCAGTGTGGCTAGCACGTCTACAGCTCCACCTGGCCATCTACCAAGCACTCCACTTGCCTCCCCGACGCTTTCAGAAGAGCCTCTTCTGGACCAACATCCCGAATGGATTCAGAATCCAAAAGCGACCCGATTTCTTGTCGGTTTACTGACAAGTATGTATGTATTGCTACTCACTATTGTGTCCTGCCTTATCTCCTTATCATCCGCATGGCAATCACCTGATCTATGGCTAGCGGAGACGGTAGATAGAAAGCTCTAGAACGATCTTTTACTGATTATTGATTTTCAGATATTCTCACTTTTGATGTACGGTATTGCCATACTATTTTTCATTTACACTTATTTTATGGTAATCTATCCAAAGCCAATCAACGCTTTGATCATGTTTCTGAACAAGAAGAGACCATCTTGGGTGCCAAGACCAGATGTGAGTTATTATCTCGGTAGCTATAAGCGATATCAAAAATGTGTCAACTGATACAATGTTGGTGATAATATGATAAACATTTTATTAGTTTAAAAATTTTTGATATCTTTCATAGGAACCGAGATAATTGAGCTTAAACCCC</canonical>
            <polymorphic>TTTGAGTGCAAACCATCAAAGAACGGGGATTAAAGGTGTATCCCGACGACAAAAAAAAATTATTTGTTGATTTTCTAAGTTTAAAGCAAACATTCAAACATAAAACTCCACAAATGGACATGCCAATGAGTGTTTGATATTACCCACCCCACAGAGAGGACTACTGTACCACTCGCCTCTCGGTATAAATACACAGAAACGCGTAGACATAGAGCACAGTCGGAACGAAACGAAATTTCTTTGTCATGGTGGTGCGTACTACAAGCAAAAATGAGTTGGCGAGAAAGGGTAAGTCATAGATTTTGTGTTTTTCCTTGTTTATCTATTGTATCATGTCCCTTTAAATAAATGCAGCTGACAATATTCTGAATATTCTAGAAGAATCCTAATTCAATGCTTTTAGAACCTCTCCGCGAGAAAGATTCCATTGTCAGTGTGGCTAGCACGTCTACAGCTCCACCTGGCCATCTACCAAGCACTCCACTTGCCTCCCCGACGCYTTCAGAAGAGCCTCTTCTGGACCAACATCCCGAATGGATTCAGAATCCAAAAGCGACCCGATTTCTTGTCGGTTTACTGACAAGTATGTATGTATTGCTACTCACTATTGTGTCCTGCCTTATCTCCTTATCATCCGCATGGCAATCACCTGATCTATGGCTAGCGGAGACGGTAGATAGAAAGCTCTAGAACGATCTTTTACTGATTATTGATTTTCAGATATTCTCACTTTTGATGTACGGTATTGCCATACTATTTTTCATTTACACTTATTTTATGGTAATCTATCCAAAGCCAATCAACGCTTTGATCATGTTTCTGAACAAGAAGAGACCATCTTGGGTGCCAAGACCAGATGTGAGTTATTATCTCGGTAGCTATAAGCGATATCAAAAATGTGTCAACTGATACAATGTTGGTGATAATATGATAAACATTTTATTAGTTTAAAAATTTTTGATATCTTTCATAGGAACCGAGATAATTGAGCTTAAACCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAATCCTAATTCAATGCTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAGATAAGGCAGGACACAATAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGAATCCTAATTCAATGCTTTTAGAACCTCTCCGCGAGAAAGATTCCATTGTCAGTGTGGCTAGCACGTCTACAGCTCCACCTGGCCATCTACCAAGCACTCCACTTGCCTCCCCGACGCTTTCAGAAGAGCCTCTTCTGGACCAACATCCCGAATGGATTCAGAATCCAAAAGCGACCCGATTTCTTGTCGGTTTACTGACAAGTATGTATGTATTGCTACTCACTATTGTGTCCTGCCTTATCTC</canonical_amplicon>
		<polymorphic_amplicon>AAGAATCCTAATTCAATGCTTTTAGAACCTCTCCGCGAGAAAGATTCCATTGTCAGTGTGGCTAGCACGTCTACAGCTCCACCTGGCCATCTACCAAGCACTCCACTTGCCTCCCCGACGCYTTCAGAAGAGCCTCTTCTGGACCAACATCCCGAATGGATTCAGAATCCAAAAGCGACCCGATTTCTTGTCGGTTTACTGACAAGTATGTATGTATTGCTACTCACTATTGTGTCCTGCCTTATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13241</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>56073</contig_pos>
        <strand>+</strand>
        <context>TTCTGGACCA[A/G]CATCCCGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCACTCCACTTGCCTCCCCGACGCTTTCAGAAGAGCCTCTTCTGGACCA</left_flank>
        <right_flank>CATCCCGAATGGATTCAGAATCCAAAAGCGACCCGATTTCTTGTCGGTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGATTAAAGGTGTATCCCGACGACAAAAAAAAATTATTTGTTGATTTTCTAAGTTTAAAGCAAACATTCAAACATAAAACTCCACAAATGGACATGCCAATGAGTGTTTGATATTACCCACCCCACAGAGAGGACTACTGTACCACTCGCCTCTCGGTATAAATACACAGAAACGCGTAGACATAGAGCACAGTCGGAACGAAACGAAATTTCTTTGTCATGGTGGTGCGTACTACAAGCAAAAATGAGTTGGCGAGAAAGGGTAAGTCATAGATTTTGTGTTTTTCCTTGTTTATCTATTGTATCATGTCCCTTTAAATAAATGCAGCTGACAATATTCTGAATATTCTAGAAGAATCCTAATTCAATGCTTTTAGAACCTCTCCGCGAGAAAGATTCCATTGTCAGTGTGGCTAGCACGTCTACAGCTCCACCTGGCCATCTACCAAGCACTCCACTTGCCTCCCCGACGCTTTCAGAAGAGCCTCTTCTGGACCAACATCCCGAATGGATTCAGAATCCAAAAGCGACCCGATTTCTTGTCGGTTTACTGACAAGTATGTATGTATTGCTACTCACTATTGTGTCCTGCCTTATCTCCTTATCATCCGCATGGCAATCACCTGATCTATGGCTAGCGGAGACGGTAGATAGAAAGCTCTAGAACGATCTTTTACTGATTATTGATTTTCAGATATTCTCACTTTTGATGTACGGTATTGCCATACTATTTTTCATTTACACTTATTTTATGGTAATCTATCCAAAGCCAATCAACGCTTTGATCATGTTTCTGAACAAGAAGAGACCATCTTGGGTGCCAAGACCAGATGTGAGTTATTATCTCGGTAGCTATAAGCGATATCAAAAATGTGTCAACTGATACAATGTTGGTGATAATATGATAAACATTTTATTAGTTTAAAAATTTTTGATATCTTTCATAGGAACCGAGATAATTGAGCTTAAACCCCTCTCCCTTTCTTCTCATAGCCCGCC</canonical>
            <polymorphic>GGGATTAAAGGTGTATCCCGACGACAAAAAAAAATTATTTGTTGATTTTCTAAGTTTAAAGCAAACATTCAAACATAAAACTCCACAAATGGACATGCCAATGAGTGTTTGATATTACCCACCCCACAGAGAGGACTACTGTACCACTCGCCTCTCGGTATAAATACACAGAAACGCGTAGACATAGAGCACAGTCGGAACGAAACGAAATTTCTTTGTCATGGTGGTGCGTACTACAAGCAAAAATGAGTTGGCGAGAAAGGGTAAGTCATAGATTTTGTGTTTTTCCTTGTTTATCTATTGTATCATGTCCCTTTAAATAAATGCAGCTGACAATATTCTGAATATTCTAGAAGAATCCTAATTCAATGCTTTTAGAACCTCTCCGCGAGAAAGATTCCATTGTCAGTGTGGCTAGCACGTCTACAGCTCCACCTGGCCATCTACCAAGCACTCCACTTGCCTCCCCGACGCTTTCAGAAGAGCCTCTTCTGGACCARCATCCCGAATGGATTCAGAATCCAAAAGCGACCCGATTTCTTGTCGGTTTACTGACAAGTATGTATGTATTGCTACTCACTATTGTGTCCTGCCTTATCTCCTTATCATCCGCATGGCAATCACCTGATCTATGGCTAGCGGAGACGGTAGATAGAAAGCTCTAGAACGATCTTTTACTGATTATTGATTTTCAGATATTCTCACTTTTGATGTACGGTATTGCCATACTATTTTTCATTTACACTTATTTTATGGTAATCTATCCAAAGCCAATCAACGCTTTGATCATGTTTCTGAACAAGAAGAGACCATCTTGGGTGCCAAGACCAGATGTGAGTTATTATCTCGGTAGCTATAAGCGATATCAAAAATGTGTCAACTGATACAATGTTGGTGATAATATGATAAACATTTTATTAGTTTAAAAATTTTTGATATCTTTCATAGGAACCGAGATAATTGAGCTTAAACCCCTCTCCCTTTCTTCTCATAGCCCGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAATCCTAATTCAATGCTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAGATAAGGCAGGACACAATAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGAATCCTAATTCAATGCTTTTAGAACCTCTCCGCGAGAAAGATTCCATTGTCAGTGTGGCTAGCACGTCTACAGCTCCACCTGGCCATCTACCAAGCACTCCACTTGCCTCCCCGACGCTTTCAGAAGAGCCTCTTCTGGACCAACATCCCGAATGGATTCAGAATCCAAAAGCGACCCGATTTCTTGTCGGTTTACTGACAAGTATGTATGTATTGCTACTCACTATTGTGTCCTGCCTTATCTC</canonical_amplicon>
		<polymorphic_amplicon>AAGAATCCTAATTCAATGCTTTTAGAACCTCTCCGCGAGAAAGATTCCATTGTCAGTGTGGCTAGCACGTCTACAGCTCCACCTGGCCATCTACCAAGCACTCCACTTGCCTCCCCGACGCTTTCAGAAGAGCCTCTTCTGGACCARCATCCCGAATGGATTCAGAATCCAAAAGCGACCCGATTTCTTGTCGGTTTACTGACAAGTATGTATGTATTGCTACTCACTATTGTGTCCTGCCTTATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13242</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>56382</contig_pos>
        <strand>+</strand>
        <context>ACAAGAAGAG[A/G]CCATCTTGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCTATCCAAAGCCAATCAACGCTTTGATCATGTTTCTGAACAAGAAGAG</left_flank>
        <right_flank>CCATCTTGGGTGCCAAGACCAGATGTGAGTTATTATCTCGGTAGCTATAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCCTTTAAATAAATGCAGCTGACAATATTCTGAATATTCTAGAAGAATCCTAATTCAATGCTTTTAGAACCTCTCCGCGAGAAAGATTCCATTGTCAGTGTGGCTAGCACGTCTACAGCTCCACCTGGCCATCTACCAAGCACTCCACTTGCCTCCCCGACGCTTTCAGAAGAGCCTCTTCTGGACCAACATCCCGAATGGATTCAGAATCCAAAAGCGACCCGATTTCTTGTCGGTTTACTGACAAGTATGTATGTATTGCTACTCACTATTGTGTCCTGCCTTATCTCCTTATCATCCGCATGGCAATCACCTGATCTATGGCTAGCGGAGACGGTAGATAGAAAGCTCTAGAACGATCTTTTACTGATTATTGATTTTCAGATATTCTCACTTTTGATGTACGGTATTGCCATACTATTTTTCATTTACACTTATTTTATGGTAATCTATCCAAAGCCAATCAACGCTTTGATCATGTTTCTGAACAAGAAGAGACCATCTTGGGTGCCAAGACCAGATGTGAGTTATTATCTCGGTAGCTATAAGCGATATCAAAAATGTGTCAACTGATACAATGTTGGTGATAATATGATAAACATTTTATTAGTTTAAAAATTTTTGATATCTTTCATAGGAACCGAGATAATTGAGCTTAAACCCCTCTCCCTTTCTTCTCATAGCCCGCCCAAACAGTTAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAACATTTGTCAACTATTAAAATATTGGTGATTATATGGTAAACATTTTATTGGTTCGCAAATTTTTTAAATCAATGAATGCACTACCGTAAGCGCATACGTACACTTTGAGCTTAATTACCTCGGTTCTTATAAGAGATATCAAAATTTTGTTAACTGATAAAATGTTGGTGATAACAGGATAATTAATTCATCAGTTAACTGTTTTTTGGTATCTCTTATGGGAACCGAGATAATAGAGGTAAAAATTTAGAGATGGC</canonical>
            <polymorphic>GTCCCTTTAAATAAATGCAGCTGACAATATTCTGAATATTCTAGAAGAATCCTAATTCAATGCTTTTAGAACCTCTCCGCGAGAAAGATTCCATTGTCAGTGTGGCTAGCACGTCTACAGCTCCACCTGGCCATCTACCAAGCACTCCACTTGCCTCCCCGACGCTTTCAGAAGAGCCTCTTCTGGACCAACATCCCGAATGGATTCAGAATCCAAAAGCGACCCGATTTCTTGTCGGTTTACTGACAAGTATGTATGTATTGCTACTCACTATTGTGTCCTGCCTTATCTCCTTATCATCCGCATGGCAATCACCTGATCTATGGCTAGCGGAGACGGTAGATAGAAAGCTCTAGAACGATCTTTTACTGATTATTGATTTTCAGATATTCTCACTTTTGATGTACGGTATTGCCATACTATTTTTCATTTACACTTATTTTATGGTAATCTATCCAAAGCCAATCAACGCTTTGATCATGTTTCTGAACAAGAAGAGRCCATCTTGGGTGCCAAGACCAGATGTGAGTTATTATCTCGGTAGCTATAAGCGATATCAAAAATGTGTCAACTGATACAATGTTGGTGATAATATGATAAACATTTTATTAGTTTAAAAATTTTTGATATCTTTCATAGGAACCGAGATAATTGAGCTTAAACCCCTCTCCCTTTCTTCTCATAGCCCGCCCAAACAGTTAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAACATTTGTCAACTATTAAAATATTGGTGATTATATGGTAAACATTTTATTGGTTCGCAAATTTTTTAAATCAATGAATGCACTACCGTAAGCGCATACGTACACTTTGAGCTTAATTACCTCGGTTCTTATAAGAGATATCAAAATTTTGTTAACTGATAAAATGTTGGTGATAACAGGATAATTAATTCATCAGTTAACTGTTTTTTGGTATCTCTTATGGGAACCGAGATAATAGAGGTAAAAATTTAGAGATGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTATCCAAAGCCAATCAAC</pcr_primer_p1>
		<pcr_primer_p2>GCCATCTCTAAATTTTTACCTCT</pcr_primer_p2>
		<pcr_amplicon_size>551</pcr_amplicon_size>
		<canonical_amplicon>ATCTATCCAAAGCCAATCAACGCTTTGATCATGTTTCTGAACAAGAAGAGACCATCTTGGGTGCCAAGACCAGATGTGAGTTATTATCTCGGTAGCTATAAGCGATATCAAAAATGTGTCAACTGATACAATGTTGGTGATAATATGATAAACATTTTATTAGTTTAAAAATTTTTGATATCTTTCATAGGAACCGAGATAATTGAGCTTAAACCCCTCTCCCTTTCTTCTCATAGCCCGCCCAAACAGTTAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAACATTTGTCAACTATTAAAATATTGGTGATTATATGGTAAACATTTTATTGGTTCGCAAATTTTTTAAATCAATGAATGCACTACCGTAAGCGCATACGTACACTTTGAGCTTAATTACCTCGGTTCTTATAAGAGATATCAAAATTTTGTTAACTGATAAAATGTTGGTGATAACAGGATAATTAATTCATCAGTTAACTGTTTTTTGGTATCTCTTATGGGAACCGAGATAATAGAGGTAAAAATTTAGAGATGGC</canonical_amplicon>
		<polymorphic_amplicon>ATCTATCCAAAGCCAATCAACGCTTTGATCATGTTTCTGAACAAGAAGAGRCCATCTTGGGTGCCAAGACCAGATGTGAGTTATTATCTCGGTAGCTATAAGCGATATCAAAAATGTGTCAACTGATACAATGTTGGTGATAATATGATAAACATTTTATTAGTTTAAAAATTTTTGATATCTTTCATAGGAACCGAGATAATTGAGCTTAAACCCCTCTCCCTTTCTTCTCATAGCCCGCCCAAACAGTTAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAACATTTGTCAACTATTAAAATATTGGTGATTATATGGTAAACATTTTATTGGTTCGCAAATTTTTTAAATCAATGAATGCACTACCGTAAGCGCATACGTACACTTTGAGCTTAATTACCTCGGTTCTTATAAGAGATATCAAAATTTTGTTAACTGATAAAATGTTGGTGATAACAGGATAATTAATTCATCAGTTAACTGTTTTTTGGTATCTCTTATGGGAACCGAGATAATAGAGGTAAAAATTTAGAGATGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13243</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>61698</contig_pos>
        <strand>+</strand>
        <context>AAGGCGGCGA[G/T]ACAATGAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGCACATGGCGCTACTGATGTTGCGGTCCGAATAAACAGAAAGGCGGCGA</left_flank>
        <right_flank>ACAATGAGTTTGGTGGTTTTGTACTCGATGTTACTTCTTCTTATTACCCC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGACACAATTTTGATATTTTGTATAGGAACTGAGATAATTGAGCTCAAACTTGACACTGTAGCGGCCCTTCAATTACTGGTTGACGCTTCCTGAAATTTGGACCTCAAAGTTTAAGCTTTATTTCACAAACTGCCAATTTAGCTGAATTTTTATTTTGAAAAATGATTAACCTATACATAAACGTGCCAAATGATAAAATGACTCATCTCTTATCACCCCACCCCCACTGTTTATCTCGCAAGTGGACAAACAGATAAGCAAAATAGCTGCTAAATATAATATCATCTCTATTAATTTTAATGATGATATTTGCTCATTGTCACTTAACCTTCCGCTGTGAGCACTAACACCCGTCGCCCACCTTCAAAAACTATGTAACTTCTCCGATTGGAATTGACACCCACGGGTACAAACTGTTCTGTTTTCTCCAATTCTCTCTGATTGTCTAGCACATGGCGCTACTGATGTTGCGGTCCGAATAAACAGAAAGGCGGCGATACAATGAGTTTGGTGGTTTTGTACTCGATGTTACTTCTTCTTATTACCCCTCCTGTCTTCCGCCCCAAATCATCAGTCCGAGAGGGGTTTGTCACTATAACTTACGAGTTTAACGAAGATCAACATGTCTGACAAAGGTTAGTTTATACTTTGTCTTACTTATGATGCTAATTGATAATATAAGCTAATTTGGGAATAAATAATTCAAAAGCTAACTCGCTCCCATTGTGTCAAATTTGAGCCCTATTATCTCAGTTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATGTTAAAGACATTAAAATAACCAATTTATCAGTTGAAATTTTTTTCATATCTTTCACAGGAACCGAGATACATGGGTTCAAAGCTTTACGGTACCTGAAATTTCCAGAAAGACTCCACATGAAAACTTCGATCGAGTCGACGTCCAGCGATGTAACAGTGTTGTCAGACTACAGTAGTACGCTGCCAGAAAACCTTCCGACATGGA</canonical>
            <polymorphic>TTGACACAATTTTGATATTTTGTATAGGAACTGAGATAATTGAGCTCAAACTTGACACTGTAGCGGCCCTTCAATTACTGGTTGACGCTTCCTGAAATTTGGACCTCAAAGTTTAAGCTTTATTTCACAAACTGCCAATTTAGCTGAATTTTTATTTTGAAAAATGATTAACCTATACATAAACGTGCCAAATGATAAAATGACTCATCTCTTATCACCCCACCCCCACTGTTTATCTCGCAAGTGGACAAACAGATAAGCAAAATAGCTGCTAAATATAATATCATCTCTATTAATTTTAATGATGATATTTGCTCATTGTCACTTAACCTTCCGCTGTGAGCACTAACACCCGTCGCCCACCTTCAAAAACTATGTAACTTCTCCGATTGGAATTGACACCCACGGGTACAAACTGTTCTGTTTTCTCCAATTCTCTCTGATTGTCTAGCACATGGCGCTACTGATGTTGCGGTCCGAATAAACAGAAAGGCGGCGAKACAATGAGTTTGGTGGTTTTGTACTCGATGTTACTTCTTCTTATTACCCCTCCTGTCTTCCGCCCCAAATCATCAGTCCGAGAGGGGTTTGTCACTATAACTTACGAGTTTAACGAAGATCAACATGTCTGACAAAGGTTAGTTTATACTTTGTCTTACTTATGATGCTAATTGATAATATAAGCTAATTTGGGAATAAATAATTCAAAAGCTAACTCGCTCCCATTGTGTCAAATTTGAGCCCTATTATCTCAGTTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATGTTAAAGACATTAAAATAACCAATTTATCAGTTGAAATTTTTTTCATATCTTTCACAGGAACCGAGATACATGGGTTCAAAGCTTTACGGTACCTGAAATTTCCAGAAAGACTCCACATGAAAACTTCGATCGAGTCGACGTCCAGCGATGTAACAGTGTTGTCAGACTACAGTAGTACGCTGCCAGAAAACCTTCCGACATGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACCTTCAAAAACTATGTAACT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTATAGTGACAAACCCCTCT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CCACCTTCAAAAACTATGTAACTTCTCCGATTGGAATTGACACCCACGGGTACAAACTGTTCTGTTTTCTCCAATTCTCTCTGATTGTCTAGCACATGGCGCTACTGATGTTGCGGTCCGAATAAACAGAAAGGCGGCGATACAATGAGTTTGGTGGTTTTGTACTCGATGTTACTTCTTCTTATTACCCCTCCTGTCTTCCGCCCCAAATCATCAGTCCGAGAGGGGTTTGTCACTATAACTT</canonical_amplicon>
		<polymorphic_amplicon>CCACCTTCAAAAACTATGTAACTTCTCCGATTGGAATTGACACCCACGGGTACAAACTGTTCTGTTTTCTCCAATTCTCTCTGATTGTCTAGCACATGGCGCTACTGATGTTGCGGTCCGAATAAACAGAAAGGCGGCGAKACAATGAGTTTGGTGGTTTTGTACTCGATGTTACTTCTTCTTATTACCCCTCCTGTCTTCCGCCCCAAATCATCAGTCCGAGAGGGGTTTGTCACTATAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13244</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>61544</contig_pos>
        <strand>+</strand>
        <context>GCTSTGAGCA[C/T]TAACACCCGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTAATGATGATATTTGCTCATTGTCACTTAACCTTCCGCTGTGAGCA</left_flank>
        <right_flank>TAACACCCGTCGCCCACCTTCAAAAACTATGTAACTTCTCCGATTGGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTTGAACTAGAACAAAAGAGATTAGTGAAAAATGAAAAACGAGAACAAAGGCCTTCTTTAACTTTGAGCCATTTTTCTCGGTTCCTGTAAAATATATCAAAAAATGGTAAACTGATAAATTGTTTATCATAATATCCCCAACATTTTATCAGTTGACACAATTTTGATATTTTGTATAGGAACTGAGATAATTGAGCTCAAACTTGACACTGTAGCGGCCCTTCAATTACTGGTTGACGCTTCCTGAAATTTGGACCTCAAAGTTTAAGCTTTATTTCACAAACTGCCAATTTAGCTGAATTTTTATTTTGAAAAATGATTAACCTATACATAAACGTGCCAAATGATAAAATGACTCATCTCTTATCACCCCACCCCCACTGTTTATCTCGCAAGTGGACAAACAGATAAGCAAAATAGCTGCTAAATATAATATCATCTCTATTAATTTTAATGATGATATTTGCTCATTGTCACTTAACCTTCCGCTGTGAGCACTAACACCCGTCGCCCACCTTCAAAAACTATGTAACTTCTCCGATTGGAATTGACACCCACGGGTACAAACTGTTCTGTTTTCTCCAATTCTCTCTGATTGTCTAGCACATGGCGCTACTGATGTTGCGGTCCGAATAAACAGAAAGGCGGCGATACAATGAGTTTGGTGGTTTTGTACTCGATGTTACTTCTTCTTATTACCCCTCCTGTCTTCCGCCCCAAATCATCAGTCCGAGAGGGGTTTGTCACTATAACTTACGAGTTTAACGAAGATCAACATGTCTGACAAAGGTTAGTTTATACTTTGTCTTACTTATGATGCTAATTGATAATATAAGCTAATTTGGGAATAAATAATTCAAAAGCTAACTCGCTCCCATTGTGTCAAATTTGAGCCCTATTATCTCAGTTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATGTTAAAGACATTAAAATAACCAATTTATCAGTTGAAATTTTTTTCATATCT</canonical>
            <polymorphic>CCTTTGAACTAGAACAAAAGAGATTAGTGAAAAATGAAAAACGAGAACAAAGGCCTTCTTTAACTTTGAGCCATTTTTCTCGGTTCCTGTAAAATATATCAAAAAATGGTAAACTGATAAATTGTTTATCATAATATCCCCAACATTTTATCAGTTGACACAATTTTGATATTTTGTATAGGAACTGAGATAATTGAGCTCAAACTTGACACTGTAGCGGCCCTTCAATTACTGGTTGACGCTTCCTGAAATTTGGACCTCAAAGTTTAAGCTTTATTTCACAAACTGCCAATTTAGCTGAATTTTTATTTTGAAAAATGATTAACCTATACATAAACGTGCCAAATGATAAAATGACTCATCTCTTATCACCCCACCCCCACTGTTTATCTCGCAAGTGGACAAACAGATAAGCAAAATAGCTGCTAAATATAATATCATCTCTATTAATTTTAATGATGATATTTGCTCATTGTCACTTAACCTTCCGCTGTGAGCAYTAACACCCGTCGCCCACCTTCAAAAACTATGTAACTTCTCCGATTGGAATTGACACCCACGGGTACAAACTGTTCTGTTTTCTCCAATTCTCTCTGATTGTCTAGCACATGGCGCTACTGATGTTGCGGTCCGAATAAACAGAAAGGCGGCGATACAATGAGTTTGGTGGTTTTGTACTCGATGTTACTTCTTCTTATTACCCCTCCTGTCTTCCGCCCCAAATCATCAGTCCGAGAGGGGTTTGTCACTATAACTTACGAGTTTAACGAAGATCAACATGTCTGACAAAGGTTAGTTTATACTTTGTCTTACTTATGATGCTAATTGATAATATAAGCTAATTTGGGAATAAATAATTCAAAAGCTAACTCGCTCCCATTGTGTCAAATTTGAGCCCTATTATCTCAGTTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATGTTAAAGACATTAAAATAACCAATTTATCAGTTGAAATTTTTTTCATATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 299 200</canonical_bands>
                <polymorphic_bands>800 200</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>398 299 200 103</canonical_bands>
                <polymorphic_bands>697 200 103</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>136 131 116 79 78 70 62 60 51 48 39 30 29 18 17 11 6 6 5 4 4</canonical_bands>
                <polymorphic_bands>136 131 116 79 78 70 62 60 51 48 39 30 29 18 17 11 10 6 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAATGACTCATCTCTTATCACC</pcr_primer_p1>
		<pcr_primer_p2>AATCAGAGAGAATTGGAGAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAAATGACTCATCTCTTATCACCCCACCCCCACTGTTTATCTCGCAAGTGGACAAACAGATAAGCAAAATAGCTGCTAAATATAATATCATCTCTATTAATTTTAATGATGATATTTGCTCATTGTCACTTAACCTTCCGCTGTGAGCACTAACACCCGTCGCCCACCTTCAAAAACTATGTAACTTCTCCGATTGGAATTGACACCCACGGGTACAAACTGTTCTGTTTTCTCCAATTCTCTCTGATT</canonical_amplicon>
		<polymorphic_amplicon>TAAAATGACTCATCTCTTATCACCCCACCCCCACTGTTTATCTCGCAAGTGGACAAACAGATAAGCAAAATAGCTGCTAAATATAATATCATCTCTATTAATTTTAATGATGATATTTGCTCATTGTCACTTAACCTTCCGCTGTGAGCAYTAACACCCGTCGCCCACCTTCAAAAACTATGTAACTTCTCCGATTGGAATTGACACCCACGGGTACAAACTGTTCTGTTTTCTCCAATTCTCTCTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13245</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>61537</contig_pos>
        <strand>+</strand>
        <context>ACCTTCCGCT[C/G]TGAGCAYTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCTATTAATTTTAATGATGATATTTGCTCATTGTCACTTAACCTTCCGCT</left_flank>
        <right_flank>TGAGCACTAACACCCGTCGCCCACCTTCAAAAACTATGTAACTTCTCCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGTCAACCTTTGAACTAGAACAAAAGAGATTAGTGAAAAATGAAAAACGAGAACAAAGGCCTTCTTTAACTTTGAGCCATTTTTCTCGGTTCCTGTAAAATATATCAAAAAATGGTAAACTGATAAATTGTTTATCATAATATCCCCAACATTTTATCAGTTGACACAATTTTGATATTTTGTATAGGAACTGAGATAATTGAGCTCAAACTTGACACTGTAGCGGCCCTTCAATTACTGGTTGACGCTTCCTGAAATTTGGACCTCAAAGTTTAAGCTTTATTTCACAAACTGCCAATTTAGCTGAATTTTTATTTTGAAAAATGATTAACCTATACATAAACGTGCCAAATGATAAAATGACTCATCTCTTATCACCCCACCCCCACTGTTTATCTCGCAAGTGGACAAACAGATAAGCAAAATAGCTGCTAAATATAATATCATCTCTATTAATTTTAATGATGATATTTGCTCATTGTCACTTAACCTTCCGCTGTGAGCACTAACACCCGTCGCCCACCTTCAAAAACTATGTAACTTCTCCGATTGGAATTGACACCCACGGGTACAAACTGTTCTGTTTTCTCCAATTCTCTCTGATTGTCTAGCACATGGCGCTACTGATGTTGCGGTCCGAATAAACAGAAAGGCGGCGATACAATGAGTTTGGTGGTTTTGTACTCGATGTTACTTCTTCTTATTACCCCTCCTGTCTTCCGCCCCAAATCATCAGTCCGAGAGGGGTTTGTCACTATAACTTACGAGTTTAACGAAGATCAACATGTCTGACAAAGGTTAGTTTATACTTTGTCTTACTTATGATGCTAATTGATAATATAAGCTAATTTGGGAATAAATAATTCAAAAGCTAACTCGCTCCCATTGTGTCAAATTTGAGCCCTATTATCTCAGTTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATGTTAAAGACATTAAAATAACCAATTTATCAGTTGAAATTTTTTT</canonical>
            <polymorphic>CGGTCAACCTTTGAACTAGAACAAAAGAGATTAGTGAAAAATGAAAAACGAGAACAAAGGCCTTCTTTAACTTTGAGCCATTTTTCTCGGTTCCTGTAAAATATATCAAAAAATGGTAAACTGATAAATTGTTTATCATAATATCCCCAACATTTTATCAGTTGACACAATTTTGATATTTTGTATAGGAACTGAGATAATTGAGCTCAAACTTGACACTGTAGCGGCCCTTCAATTACTGGTTGACGCTTCCTGAAATTTGGACCTCAAAGTTTAAGCTTTATTTCACAAACTGCCAATTTAGCTGAATTTTTATTTTGAAAAATGATTAACCTATACATAAACGTGCCAAATGATAAAATGACTCATCTCTTATCACCCCACCCCCACTGTTTATCTCGCAAGTGGACAAACAGATAAGCAAAATAGCTGCTAAATATAATATCATCTCTATTAATTTTAATGATGATATTTGCTCATTGTCACTTAACCTTCCGCTSTGAGCACTAACACCCGTCGCCCACCTTCAAAAACTATGTAACTTCTCCGATTGGAATTGACACCCACGGGTACAAACTGTTCTGTTTTCTCCAATTCTCTCTGATTGTCTAGCACATGGCGCTACTGATGTTGCGGTCCGAATAAACAGAAAGGCGGCGATACAATGAGTTTGGTGGTTTTGTACTCGATGTTACTTCTTCTTATTACCCCTCCTGTCTTCCGCCCCAAATCATCAGTCCGAGAGGGGTTTGTCACTATAACTTACGAGTTTAACGAAGATCAACATGTCTGACAAAGGTTAGTTTATACTTTGTCTTACTTATGATGCTAATTGATAATATAAGCTAATTTGGGAATAAATAATTCAAAAGCTAACTCGCTCCCATTGTGTCAAATTTGAGCCCTATTATCTCAGTTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATGTTAAAGACATTAAAATAACCAATTTATCAGTTGAAATTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>136 131 109 79 78 70 62 60 51 48 39 36 30 18 17 11 6 6 5 4 4</canonical_bands>
                <polymorphic_bands>136 131 109 79 78 70 62 60 51 48 39 36 30 21 18 11 6 6 5 4</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAATGACTCATCTCTTATCACC</pcr_primer_p1>
		<pcr_primer_p2>AATCAGAGAGAATTGGAGAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAAATGACTCATCTCTTATCACCCCACCCCCACTGTTTATCTCGCAAGTGGACAAACAGATAAGCAAAATAGCTGCTAAATATAATATCATCTCTATTAATTTTAATGATGATATTTGCTCATTGTCACTTAACCTTCCGCTGTGAGCACTAACACCCGTCGCCCACCTTCAAAAACTATGTAACTTCTCCGATTGGAATTGACACCCACGGGTACAAACTGTTCTGTTTTCTCCAATTCTCTCTGATT</canonical_amplicon>
		<polymorphic_amplicon>TAAAATGACTCATCTCTTATCACCCCACCCCCACTGTTTATCTCGCAAGTGGACAAACAGATAAGCAAAATAGCTGCTAAATATAATATCATCTCTATTAATTTTAATGATGATATTTGCTCATTGTCACTTAACCTTCCGCTSTGAGCACTAACACCCGTCGCCCACCTTCAAAAACTATGTAACTTCTCCGATTGGAATTGACACCCACGGGTACAAACTGTTCTGTTTTCTCCAATTCTCTCTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13246</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>61518</contig_pos>
        <strand>+</strand>
        <context>ATTTGCTCAT[C/T]GTCACTTAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCTAAATATAATATCATCTCTATTAATTTTAATGATGATATTTGCTCAT</left_flank>
        <right_flank>GTCACTTAACCTTCCGCTGTGAGCACTAACACCCGTCGCCCACCTTCAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGCACATTTTCTCTTGCGGTCAACCTTTGAACTAGAACAAAAGAGATTAGTGAAAAATGAAAAACGAGAACAAAGGCCTTCTTTAACTTTGAGCCATTTTTCTCGGTTCCTGTAAAATATATCAAAAAATGGTAAACTGATAAATTGTTTATCATAATATCCCCAACATTTTATCAGTTGACACAATTTTGATATTTTGTATAGGAACTGAGATAATTGAGCTCAAACTTGACACTGTAGCGGCCCTTCAATTACTGGTTGACGCTTCCTGAAATTTGGACCTCAAAGTTTAAGCTTTATTTCACAAACTGCCAATTTAGCTGAATTTTTATTTTGAAAAATGATTAACCTATACATAAACGTGCCAAATGATAAAATGACTCATCTCTTATCACCCCACCCCCACTGTTTATCTCGCAAGTGGACAAACAGATAAGCAAAATAGCTGCTAAATATAATATCATCTCTATTAATTTTAATGATGATATTTGCTCATTGTCACTTAACCTTCCGCTGTGAGCACTAACACCCGTCGCCCACCTTCAAAAACTATGTAACTTCTCCGATTGGAATTGACACCCACGGGTACAAACTGTTCTGTTTTCTCCAATTCTCTCTGATTGTCTAGCACATGGCGCTACTGATGTTGCGGTCCGAATAAACAGAAAGGCGGCGATACAATGAGTTTGGTGGTTTTGTACTCGATGTTACTTCTTCTTATTACCCCTCCTGTCTTCCGCCCCAAATCATCAGTCCGAGAGGGGTTTGTCACTATAACTTACGAGTTTAACGAAGATCAACATGTCTGACAAAGGTTAGTTTATACTTTGTCTTACTTATGATGCTAATTGATAATATAAGCTAATTTGGGAATAAATAATTCAAAAGCTAACTCGCTCCCATTGTGTCAAATTTGAGCCCTATTATCTCAGTTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATGTTAAAGACATTAAAATAACCAATT</canonical>
            <polymorphic>TTTCGCACATTTTCTCTTGCGGTCAACCTTTGAACTAGAACAAAAGAGATTAGTGAAAAATGAAAAACGAGAACAAAGGCCTTCTTTAACTTTGAGCCATTTTTCTCGGTTCCTGTAAAATATATCAAAAAATGGTAAACTGATAAATTGTTTATCATAATATCCCCAACATTTTATCAGTTGACACAATTTTGATATTTTGTATAGGAACTGAGATAATTGAGCTCAAACTTGACACTGTAGCGGCCCTTCAATTACTGGTTGACGCTTCCTGAAATTTGGACCTCAAAGTTTAAGCTTTATTTCACAAACTGCCAATTTAGCTGAATTTTTATTTTGAAAAATGATTAACCTATACATAAACGTGCCAAATGATAAAATGACTCATCTCTTATCACCCCACCCCCACTGTTTATCTCGCAAGTGGACAAACAGATAAGCAAAATAGCTGCTAAATATAATATCATCTCTATTAATTTTAATGATGATATTTGCTCATYGTCACTTAACCTTCCGCTGTGAGCACTAACACCCGTCGCCCACCTTCAAAAACTATGTAACTTCTCCGATTGGAATTGACACCCACGGGTACAAACTGTTCTGTTTTCTCCAATTCTCTCTGATTGTCTAGCACATGGCGCTACTGATGTTGCGGTCCGAATAAACAGAAAGGCGGCGATACAATGAGTTTGGTGGTTTTGTACTCGATGTTACTTCTTCTTATTACCCCTCCTGTCTTCCGCCCCAAATCATCAGTCCGAGAGGGGTTTGTCACTATAACTTACGAGTTTAACGAAGATCAACATGTCTGACAAAGGTTAGTTTATACTTTGTCTTACTTATGATGCTAATTGATAATATAAGCTAATTTGGGAATAAATAATTCAAAAGCTAACTCGCTCCCATTGTGTCAAATTTGAGCCCTATTATCTCAGTTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATGTTAAAGACATTAAAATAACCAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAATGACTCATCTCTTATCACC</pcr_primer_p1>
		<pcr_primer_p2>AATCAGAGAGAATTGGAGAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAAATGACTCATCTCTTATCACCCCACCCCCACTGTTTATCTCGCAAGTGGACAAACAGATAAGCAAAATAGCTGCTAAATATAATATCATCTCTATTAATTTTAATGATGATATTTGCTCATTGTCACTTAACCTTCCGCTGTGAGCACTAACACCCGTCGCCCACCTTCAAAAACTATGTAACTTCTCCGATTGGAATTGACACCCACGGGTACAAACTGTTCTGTTTTCTCCAATTCTCTCTGATT</canonical_amplicon>
		<polymorphic_amplicon>TAAAATGACTCATCTCTTATCACCCCACCCCCACTGTTTATCTCGCAAGTGGACAAACAGATAAGCAAAATAGCTGCTAAATATAATATCATCTCTATTAATTTTAATGATGATATTTGCTCATYGTCACTTAACCTTCCGCTGTGAGCACTAACACCCGTCGCCCACCTTCAAAAACTATGTAACTTCTCCGATTGGAATTGACACCCACGGGTACAAACTGTTCTGTTTTCTCCAATTCTCTCTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13247</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>61484</contig_pos>
        <strand>+</strand>
        <context>ATATAATATC[A/G]TCTCTATTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTCGCAAGTGGACAAACAGATAAGCAAAATAGCTGCTAAATATAATATC</left_flank>
        <right_flank>TCTCTATTAATTTTAATGATGATATTTGCTCATTGTCACTTAACCTTCCG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTTCTTTCATGTTTACCGCCAGTTCAAAATCGTTTCGCACATTTTCTCTTGCGGTCAACCTTTGAACTAGAACAAAAGAGATTAGTGAAAAATGAAAAACGAGAACAAAGGCCTTCTTTAACTTTGAGCCATTTTTCTCGGTTCCTGTAAAATATATCAAAAAATGGTAAACTGATAAATTGTTTATCATAATATCCCCAACATTTTATCAGTTGACACAATTTTGATATTTTGTATAGGAACTGAGATAATTGAGCTCAAACTTGACACTGTAGCGGCCCTTCAATTACTGGTTGACGCTTCCTGAAATTTGGACCTCAAAGTTTAAGCTTTATTTCACAAACTGCCAATTTAGCTGAATTTTTATTTTGAAAAATGATTAACCTATACATAAACGTGCCAAATGATAAAATGACTCATCTCTTATCACCCCACCCCCACTGTTTATCTCGCAAGTGGACAAACAGATAAGCAAAATAGCTGCTAAATATAATATCATCTCTATTAATTTTAATGATGATATTTGCTCATTGTCACTTAACCTTCCGCTGTGAGCACTAACACCCGTCGCCCACCTTCAAAAACTATGTAACTTCTCCGATTGGAATTGACACCCACGGGTACAAACTGTTCTGTTTTCTCCAATTCTCTCTGATTGTCTAGCACATGGCGCTACTGATGTTGCGGTCCGAATAAACAGAAAGGCGGCGATACAATGAGTTTGGTGGTTTTGTACTCGATGTTACTTCTTCTTATTACCCCTCCTGTCTTCCGCCCCAAATCATCAGTCCGAGAGGGGTTTGTCACTATAACTTACGAGTTTAACGAAGATCAACATGTCTGACAAAGGTTAGTTTATACTTTGTCTTACTTATGATGCTAATTGATAATATAAGCTAATTTGGGAATAAATAATTCAAAAGCTAACTCGCTCCCATTGTGTCAAATTTGAGCCCTATTATCTCAGTTCCTATGAGAGATATCAAAATTTTGTCAAC</canonical>
            <polymorphic>TCTTTCTTTCATGTTTACCGCCAGTTCAAAATCGTTTCGCACATTTTCTCTTGCGGTCAACCTTTGAACTAGAACAAAAGAGATTAGTGAAAAATGAAAAACGAGAACAAAGGCCTTCTTTAACTTTGAGCCATTTTTCTCGGTTCCTGTAAAATATATCAAAAAATGGTAAACTGATAAATTGTTTATCATAATATCCCCAACATTTTATCAGTTGACACAATTTTGATATTTTGTATAGGAACTGAGATAATTGAGCTCAAACTTGACACTGTAGCGGCCCTTCAATTACTGGTTGACGCTTCCTGAAATTTGGACCTCAAAGTTTAAGCTTTATTTCACAAACTGCCAATTTAGCTGAATTTTTATTTTGAAAAATGATTAACCTATACATAAACGTGCCAAATGATAAAATGACTCATCTCTTATCACCCCACCCCCACTGTTTATCTCGCAAGTGGACAAACAGATAAGCAAAATAGCTGCTAAATATAATATCRTCTCTATTAATTTTAATGATGATATTTGCTCATTGTCACTTAACCTTCCGCTGTGAGCACTAACACCCGTCGCCCACCTTCAAAAACTATGTAACTTCTCCGATTGGAATTGACACCCACGGGTACAAACTGTTCTGTTTTCTCCAATTCTCTCTGATTGTCTAGCACATGGCGCTACTGATGTTGCGGTCCGAATAAACAGAAAGGCGGCGATACAATGAGTTTGGTGGTTTTGTACTCGATGTTACTTCTTCTTATTACCCCTCCTGTCTTCCGCCCCAAATCATCAGTCCGAGAGGGGTTTGTCACTATAACTTACGAGTTTAACGAAGATCAACATGTCTGACAAAGGTTAGTTTATACTTTGTCTTACTTATGATGCTAATTGATAATATAAGCTAATTTGGGAATAAATAATTCAAAAGCTAACTCGCTCCCATTGTGTCAAATTTGAGCCCTATTATCTCAGTTCCTATGAGAGATATCAAAATTTTGTCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAATGACTCATCTCTTATCACC</pcr_primer_p1>
		<pcr_primer_p2>AATCAGAGAGAATTGGAGAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAAATGACTCATCTCTTATCACCCCACCCCCACTGTTTATCTCGCAAGTGGACAAACAGATAAGCAAAATAGCTGCTAAATATAATATCATCTCTATTAATTTTAATGATGATATTTGCTCATTGTCACTTAACCTTCCGCTGTGAGCACTAACACCCGTCGCCCACCTTCAAAAACTATGTAACTTCTCCGATTGGAATTGACACCCACGGGTACAAACTGTTCTGTTTTCTCCAATTCTCTCTGATT</canonical_amplicon>
		<polymorphic_amplicon>TAAAATGACTCATCTCTTATCACCCCACCCCCACTGTTTATCTCGCAAGTGGACAAACAGATAAGCAAAATAGCTGCTAAATATAATATCRTCTCTATTAATTTTAATGATGATATTTGCTCATTGTCACTTAACCTTCCGCTGTGAGCACTAACACCCGTCGCCCACCTTCAAAAACTATGTAACTTCTCCGATTGGAATTGACACCCACGGGTACAAACTGTTCTGTTTTCTCCAATTCTCTCTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13248</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>61420</contig_pos>
        <strand>+</strand>
        <context>TTATCACCCC[A/C]CCCCCACTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCTATACATAAACGTGCCAAATGATAAAATGACTCATCTCTTATCACCCC</left_flank>
        <right_flank>CCCCCACTGTTTATCTCGCAAGTGGACAAACAGATAAGCAAAATAGCTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAACAAAAATGTCTGTTATGTTTCTTTATATACTTTTCCATACCGTAACCATTTTCTATTTGCTCTTTCTTTCATGTTTACCGCCAGTTCAAAATCGTTTCGCACATTTTCTCTTGCGGTCAACCTTTGAACTAGAACAAAAGAGATTAGTGAAAAATGAAAAACGAGAACAAAGGCCTTCTTTAACTTTGAGCCATTTTTCTCGGTTCCTGTAAAATATATCAAAAAATGGTAAACTGATAAATTGTTTATCATAATATCCCCAACATTTTATCAGTTGACACAATTTTGATATTTTGTATAGGAACTGAGATAATTGAGCTCAAACTTGACACTGTAGCGGCCCTTCAATTACTGGTTGACGCTTCCTGAAATTTGGACCTCAAAGTTTAAGCTTTATTTCACAAACTGCCAATTTAGCTGAATTTTTATTTTGAAAAATGATTAACCTATACATAAACGTGCCAAATGATAAAATGACTCATCTCTTATCACCCCACCCCCACTGTTTATCTCGCAAGTGGACAAACAGATAAGCAAAATAGCTGCTAAATATAATATCATCTCTATTAATTTTAATGATGATATTTGCTCATTGTCACTTAACCTTCCGCTGTGAGCACTAACACCCGTCGCCCACCTTCAAAAACTATGTAACTTCTCCGATTGGAATTGACACCCACGGGTACAAACTGTTCTGTTTTCTCCAATTCTCTCTGATTGTCTAGCACATGGCGCTACTGATGTTGCGGTCCGAATAAACAGAAAGGCGGCGATACAATGAGTTTGGTGGTTTTGTACTCGATGTTACTTCTTCTTATTACCCCTCCTGTCTTCCGCCCCAAATCATCAGTCCGAGAGGGGTTTGTCACTATAACTTACGAGTTTAACGAAGATCAACATGTCTGACAAAGGTTAGTTTATACTTTGTCTTACTTATGATGCTAATTGATAATATAAGCTAATTTGGGAATAAATAATTCAAAAGCTAACTCGCTC</canonical>
            <polymorphic>TCAACAAAAATGTCTGTTATGTTTCTTTATATACTTTTCCATACCGTAACCATTTTCTATTTGCTCTTTCTTTCATGTTTACCGCCAGTTCAAAATCGTTTCGCACATTTTCTCTTGCGGTCAACCTTTGAACTAGAACAAAAGAGATTAGTGAAAAATGAAAAACGAGAACAAAGGCCTTCTTTAACTTTGAGCCATTTTTCTCGGTTCCTGTAAAATATATCAAAAAATGGTAAACTGATAAATTGTTTATCATAATATCCCCAACATTTTATCAGTTGACACAATTTTGATATTTTGTATAGGAACTGAGATAATTGAGCTCAAACTTGACACTGTAGCGGCCCTTCAATTACTGGTTGACGCTTCCTGAAATTTGGACCTCAAAGTTTAAGCTTTATTTCACAAACTGCCAATTTAGCTGAATTTTTATTTTGAAAAATGATTAACCTATACATAAACGTGCCAAATGATAAAATGACTCATCTCTTATCACCCCMCCCCCACTGTTTATCTCGCAAGTGGACAAACAGATAAGCAAAATAGCTGCTAAATATAATATCATCTCTATTAATTTTAATGATGATATTTGCTCATTGTCACTTAACCTTCCGCTGTGAGCACTAACACCCGTCGCCCACCTTCAAAAACTATGTAACTTCTCCGATTGGAATTGACACCCACGGGTACAAACTGTTCTGTTTTCTCCAATTCTCTCTGATTGTCTAGCACATGGCGCTACTGATGTTGCGGTCCGAATAAACAGAAAGGCGGCGATACAATGAGTTTGGTGGTTTTGTACTCGATGTTACTTCTTCTTATTACCCCTCCTGTCTTCCGCCCCAAATCATCAGTCCGAGAGGGGTTTGTCACTATAACTTACGAGTTTAACGAAGATCAACATGTCTGACAAAGGTTAGTTTATACTTTGTCTTACTTATGATGCTAATTGATAATATAAGCTAATTTGGGAATAAATAATTCAAAAGCTAACTCGCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>131 128 105 79 78 70 62 60 51 48 48 39 30 18 17 11 6 6 5 4 4</canonical_bands>
                <polymorphic_bands>131 128 105 79 78 70 62 60 51 48 48 39 30 18 17 11 11 6 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAAAAATGATTAACCTATACA</pcr_primer_p1>
		<pcr_primer_p2>CCAATCGGAGAAGTTACATAGT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAAAAATGATTAACCTATACATAAACGTGCCAAATGATAAAATGACTCATCTCTTATCACCCCACCCCCACTGTTTATCTCGCAAGTGGACAAACAGATAAGCAAAATAGCTGCTAAATATAATATCATCTCTATTAATTTTAATGATGATATTTGCTCATTGTCACTTAACCTTCCGCTGTGAGCACTAACACCCGTCGCCCACCTTCAAAAACTATGTAACTTCTCCGATTGG</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAAAAATGATTAACCTATACATAAACGTGCCAAATGATAAAATGACTCATCTCTTATCACCCCMCCCCCACTGTTTATCTCGCAAGTGGACAAACAGATAAGCAAAATAGCTGCTAAATATAATATCATCTCTATTAATTTTAATGATGATATTTGCTCATTGTCACTTAACCTTCCGCTGTGAGCACTAACACCCGTCGCCCACCTTCAAAAACTATGTAACTTCTCCGATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13249</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>129910</contig_pos>
        <strand>+</strand>
        <context>AACTTCAAAA[A/C]ATTCAAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATTGACTACGTGTCACAGTTAGTAGTTCTGAAACATGCGAACTTCAAAA</left_flank>
        <right_flank>ATTCAAATTTCCAGCGCTGCCGGCTGCTCCACCATCGCATTCTCTCCGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAAATGGATCACATCGGCTTCTGTAACTCGATTCTATTCGGTTCCAAACTTCTCTACGTCTCCACAGATGAGAAGAGATATTCGACACTCTGTTGTACAGAAATCGCCGGAACAGAGAACCATACAGCTAAGGCGCGAATTTTGACTGCACCTGACATCTCGCCGATGTGTATGATAATCGGAGAGGAATCAGAGAACGAGGTGCTGATTGGAATGGAGGATGGGCGGTTGGCAATTGCTTATGGAGATGAGAAGCAGGGAGTGTTCGATTATATTGTGACGGTATATCCACATGGCTAGATTTGACCCCTTAATGATGTTTGTGTTTCAGCAACAACTAGGAAAAGATCCCATCTTCTGCCTTGCAAGTTCTTCAGAATGGGTTGTGGCCGGATGTGCAAGACCACCGATTCACTTGGTCAATCGGACAGATCTAGTGGTTCAGAAGATTGACTACGTGTCACAGTTAGTAGTTCTGAAACATGCGAACTTCAAAAAATTCAAATTTCCAGCGCTGCCGGCTGCTCCACCATCGCATTCTCTCCGAACAACAGACAGATCATTGGCGGCTTCTTCGACGGATCGATTCGCGTCTTCTCCCGCCACAAACTGACCGTACTTCTGGCTCTCACAAATTTCCACGAAGCCACCATCAGCTCTATCCAATGGCTTCCAGAAGAGGATGACGAACTCGTTATCGCCGCGTCGTCAGATGAAACTATTACTTTGTGGAAGTTAAAATAATCATGATCTATTATATGTTCTTTCTTGTTTTATCGCTATTTATGTATGTGTATTTATTTCAAACCCTTTTGTGCGACACCTTGTGATAGGAAATTAAAATTTTGGGATTTTAGAACTTTGTACAAAACTTGATACGCACAGATCACACAGCCAAAAGAATCTTTGCTGCGTAGGATCACTGGTTCAGTCTTCGTTTGTATCAGAAGAGATTTCGGTTTGAAGTTTTTCACACATCTTGTGCGTTCTATTTGAAG</canonical>
            <polymorphic>TCGAAATGGATCACATCGGCTTCTGTAACTCGATTCTATTCGGTTCCAAACTTCTCTACGTCTCCACAGATGAGAAGAGATATTCGACACTCTGTTGTACAGAAATCGCCGGAACAGAGAACCATACAGCTAAGGCGCGAATTTTGACTGCACCTGACATCTCGCCGATGTGTATGATAATCGGAGAGGAATCAGAGAACGAGGTGCTGATTGGAATGGAGGATGGGCGGTTGGCAATTGCTTATGGAGATGAGAAGCAGGGAGTGTTCGATTATATTGTGACGGTATATCCACATGGCTAGATTTGACCCCTTAATGATGTTTGTGTTTCAGCAACAACTAGGAAAAGATCCCATCTTCTGCCTTGCAAGTTCTTCAGAATGGGTTGTGGCCGGATGTGCAAGACCACCGATTCACTTGGTCAATCGGACAGATCTAGTGGTTCAGAAGATTGACTACGTGTCACAGTTAGTAGTTCTGAAACATGCGAACTTCAAAAMATTCAAATTTCCAGCGCTGCCGGCTGCTCCACCATCGCATTCTCTCCGAACAACAGACAGATCATTGGCGGCTTCTTCGACGGATCGATTCGCGTCTTCTCCCGCCACAAACTGACCGTACTTCTGGCTCTCACAAATTTCCACGAAGCCACCATCAGCTCTATCCAATGGCTTCCAGAAGAGGATGACGAACTCGTTATCGCCGCGTCGTCAGATGAAACTATTACTTTGTGGAAGTTAAAATAATCATGATCTATTATATGTTCTTTCTTGTTTTATCGCTATTTATGTATGTGTATTTATTTCAAACCCTTTTGTGCGACACCTTGTGATAGGAAATTAAAATTTTGGGATTTTAGAACTTTGTACAAAACTTGATACGCACAGATCACACAGCCAAAAGAATCTTTGCTGCGTAGGATCACTGGTTCAGTCTTCGTTTGTATCAGAAGAGATTTCGGTTTGAAGTTTTTCACACATCTTGTGCGTTCTATTTGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>360 208 157 139 130 6</canonical_bands>
                <polymorphic_bands>366 208 157 139 130</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>264 202 157 139 130 96 6 6</canonical_bands>
                <polymorphic_bands>270 202 157 139 130 96 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACAGATCTAGTGGTTCAGAAGA</pcr_primer_p1>
		<pcr_primer_p2>CATTGGATAGAGCTGATGGT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GACAGATCTAGTGGTTCAGAAGATTGACTACGTGTCACAGTTAGTAGTTCTGAAACATGCGAACTTCAAAAAATTCAAATTTCCAGCGCTGCCGGCTGCTCCACCATCGCATTCTCTCCGAACAACAGACAGATCATTGGCGGCTTCTTCGACGGATCGATTCGCGTCTTCTCCCGCCACAAACTGACCGTACTTCTGGCTCTCACAAATTTCCACGAAGCCACCATCAGCTCTATCCAATG</canonical_amplicon>
		<polymorphic_amplicon>GACAGATCTAGTGGTTCAGAAGATTGACTACGTGTCACAGTTAGTAGTTCTGAAACATGCGAACTTCAAAAMATTCAAATTTCCAGCGCTGCCGGCTGCTCCACCATCGCATTCTCTCCGAACAACAGACAGATCATTGGCGGCTTCTTCGACGGATCGATTCGCGTCTTCTCCCGCCACAAACTGACCGTACTTCTGGCTCTCACAAATTTCCACGAAGCCACCATCAGCTCTATCCAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13250</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>130155</contig_pos>
        <strand>+</strand>
        <context>AAGTTAAAAT[A/G]ATCATGATCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTTATCGCCGCGTCGTCAGATGAAACTATTACTTTGTGGAAGTTAAAAT</left_flank>
        <right_flank>ATCATGATCTATTATATGTTCTTTCTTGTTTTATCGCTATTTATGTATGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGATGAGAAGCAGGGAGTGTTCGATTATATTGTGACGGTATATCCACATGGCTAGATTTGACCCCTTAATGATGTTTGTGTTTCAGCAACAACTAGGAAAAGATCCCATCTTCTGCCTTGCAAGTTCTTCAGAATGGGTTGTGGCCGGATGTGCAAGACCACCGATTCACTTGGTCAATCGGACAGATCTAGTGGTTCAGAAGATTGACTACGTGTCACAGTTAGTAGTTCTGAAACATGCGAACTTCAAAAAATTCAAATTTCCAGCGCTGCCGGCTGCTCCACCATCGCATTCTCTCCGAACAACAGACAGATCATTGGCGGCTTCTTCGACGGATCGATTCGCGTCTTCTCCCGCCACAAACTGACCGTACTTCTGGCTCTCACAAATTTCCACGAAGCCACCATCAGCTCTATCCAATGGCTTCCAGAAGAGGATGACGAACTCGTTATCGCCGCGTCGTCAGATGAAACTATTACTTTGTGGAAGTTAAAATAATCATGATCTATTATATGTTCTTTCTTGTTTTATCGCTATTTATGTATGTGTATTTATTTCAAACCCTTTTGTGCGACACCTTGTGATAGGAAATTAAAATTTTGGGATTTTAGAACTTTGTACAAAACTTGATACGCACAGATCACACAGCCAAAAGAATCTTTGCTGCGTAGGATCACTGGTTCAGTCTTCGTTTGTATCAGAAGAGATTTCGGTTTGAAGTTTTTCACACATCTTGTGCGTTCTATTTGAAGCTCTCACACAAAATTTCAGGCTGAAATCTTTTGTTTAAACAATGTTATGAAGAATTCTTCTAAGCCTATTTTTATTCCAGATTTCAGATTCAATAACTTATGACAGAGAAGAGATTTCGGTCTGAATTTTTATACACATGTTGTACATTCTATTTTGAGCTCTCACACAAAATCTAGAAATTGTGGGTAACGTTTTTACGATACTTTGTGACAGGAAATTAAATTTCTTGGGACTATTTATTCAT</canonical>
            <polymorphic>GGAGATGAGAAGCAGGGAGTGTTCGATTATATTGTGACGGTATATCCACATGGCTAGATTTGACCCCTTAATGATGTTTGTGTTTCAGCAACAACTAGGAAAAGATCCCATCTTCTGCCTTGCAAGTTCTTCAGAATGGGTTGTGGCCGGATGTGCAAGACCACCGATTCACTTGGTCAATCGGACAGATCTAGTGGTTCAGAAGATTGACTACGTGTCACAGTTAGTAGTTCTGAAACATGCGAACTTCAAAAAATTCAAATTTCCAGCGCTGCCGGCTGCTCCACCATCGCATTCTCTCCGAACAACAGACAGATCATTGGCGGCTTCTTCGACGGATCGATTCGCGTCTTCTCCCGCCACAAACTGACCGTACTTCTGGCTCTCACAAATTTCCACGAAGCCACCATCAGCTCTATCCAATGGCTTCCAGAAGAGGATGACGAACTCGTTATCGCCGCGTCGTCAGATGAAACTATTACTTTGTGGAAGTTAAAATRATCATGATCTATTATATGTTCTTTCTTGTTTTATCGCTATTTATGTATGTGTATTTATTTCAAACCCTTTTGTGCGACACCTTGTGATAGGAAATTAAAATTTTGGGATTTTAGAACTTTGTACAAAACTTGATACGCACAGATCACACAGCCAAAAGAATCTTTGCTGCGTAGGATCACTGGTTCAGTCTTCGTTTGTATCAGAAGAGATTTCGGTTTGAAGTTTTTCACACATCTTGTGCGTTCTATTTGAAGCTCTCACACAAAATTTCAGGCTGAAATCTTTTGTTTAAACAATGTTATGAAGAATTCTTCTAAGCCTATTTTTATTCCAGATTTCAGATTCAATAACTTATGACAGAGAAGAGATTTCGGTCTGAATTTTTATACACATGTTGTACATTCTATTTTGAGCTCTCACACAAAATCTAGAAATTGTGGGTAACGTTTTTACGATACTTTGTGACAGGAAATTAAATTTCTTGGGACTATTTATTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAAACTGACCGTACTTCTG</pcr_primer_p1>
		<pcr_primer_p2>AATCCCAAAATTTTAATTTCCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACAAACTGACCGTACTTCTGGCTCTCACAAATTTCCACGAAGCCACCATCAGCTCTATCCAATGGCTTCCAGAAGAGGATGACGAACTCGTTATCGCCGCGTCGTCAGATGAAACTATTACTTTGTGGAAGTTAAAATAATCATGATCTATTATATGTTCTTTCTTGTTTTATCGCTATTTATGTATGTGTATTTATTTCAAACCCTTTTGTGCGACACCTTGTGATAGGAAATTAAAATTTTGGGATT</canonical_amplicon>
		<polymorphic_amplicon>CACAAACTGACCGTACTTCTGGCTCTCACAAATTTCCACGAAGCCACCATCAGCTCTATCCAATGGCTTCCAGAAGAGGATGACGAACTCGTTATCGCCGCGTCGTCAGATGAAACTATTACTTTGTGGAAGTTAAAATRATCATGATCTATTATATGTTCTTTCTTGTTTTATCGCTATTTATGTATGTGTATTTATTTCAAACCCTTTTGTGCGACACCTTGTGATAGGAAATTAAAATTTTGGGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13251</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>133375</contig_pos>
        <strand>+</strand>
        <context>AAAGTTTTGA[A/T]TTCAGTGCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CACGTTTTCAACCAAATTGTCAAACACTTCCGAATCAGAAAAAGTTTTGA</left_flank>
        <right_flank>TTCAGTGCTATTGAATATCTTGCCATATTTCTCGCAAATGATCTTTCTTA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGCTGATCTTCAAAGAAGTACGTCTCCTCATCTAATCCAGTGAATTCCAGAATGTTCGAGTGGATGAAAGCGGCACGGACACCTTGTATCACTTCAAAGTTTTCTGGCTTCTCTTCAGGATACACCATATCTCCGGAATCCTCAGTTTCTGGCCACATTGTTCGATCCGATCGTGTCGACGGAAGATAGTCAGATGCATCGGATTGAGTAGATAAGGTGGAAGTTCCGATGGATCTCAAATCGTCAGAATCATACAAAACGTTAGGTTCCTCCTTGAATTTCTTTGCAGTAAATGTTGGGACAGAATCTTATTGAAACTCTCCAGATTCTCATCTTTGCTCATATTGTTGACTTCCTTGAAAACGTGAGCAGCATGGGATTTCATAAGATCGAAGATCGTCGTCATCCCATTTTCCAGCACTTCTTGGGTTCTATTCGAGTCAATACTCACGTTTTCAACCAAATTGTCAAACACTTCCGAATCAGAAAAAGTTTTGATTTCAGTGCTATTGAATATCTTGCCATATTTCTCGCAAATGATCTTTCTTAGGGATAGAAATTCATCAAAAACTTTCCTTGATGGTAGCTTGAACAGAGAAGATTCATCATGGATCTGCTTCCATTTTTTAGCAACTGTCATGAGAGGTTCGTAGTCTACTGTAGATGACTTGTAGATTGAATCCAGATCAGAGAGTATCTAGAAATTATTGATTAGGAAGAAAAGAATCTCCAGAATCACAGACCTTTAGCTCTTTTCCAATTCCCTCAATCATATCTTCTTTCTTCTTGTCCGTCCAAACTTTATCGATTTCCAACATCTGTCTCATTAGCTCCATAACAGGTCGCAAAGATTCACGAAGTGTATCTAGACTGCCCTTCTGGTTAAGAGATTCCATAATCCAAGGATCGGAGAAACTGTCCCAAATCCCTCCGGTATCCTTGATGCCACGTGGGAAAGCAGGCAGGCACTTGCTCTCGGATGGGTCATGGAGATAAAGT</canonical>
            <polymorphic>TCGCTGATCTTCAAAGAAGTACGTCTCCTCATCTAATCCAGTGAATTCCAGAATGTTCGAGTGGATGAAAGCGGCACGGACACCTTGTATCACTTCAAAGTTTTCTGGCTTCTCTTCAGGATACACCATATCTCCGGAATCCTCAGTTTCTGGCCACATTGTTCGATCCGATCGTGTCGACGGAAGATAGTCAGATGCATCGGATTGAGTAGATAAGGTGGAAGTTCCGATGGATCTCAAATCGTCAGAATCATACAAAACGTTAGGTTCCTCCTTGAATTTCTTTGCAGTAAATGTTGGGACAGAATCTTATTGAAACTCTCCAGATTCTCATCTTTGCTCATATTGTTGACTTCCTTGAAAACGTGAGCAGCATGGGATTTCATAAGATCGAAGATCGTCGTCATCCCATTTTCCAGCACTTCTTGGGTTCTATTCGAGTCAATACTCACGTTTTCAACCAAATTGTCAAACACTTCCGAATCAGAAAAAGTTTTGAWTTCAGTGCTATTGAATATCTTGCCATATTTCTCGCAAATGATCTTTCTTAGGGATAGAAATTCATCAAAAACTTTCCTTGATGGTAGCTTGAACAGAGAAGATTCATCATGGATCTGCTTCCATTTTTTAGCAACTGTCATGAGAGGTTCGTAGTCTACTGTAGATGACTTGTAGATTGAATCCAGATCAGAGAGTATCTAGAAATTATTGATTAGGAAGAAAAGAATCTCCAGAATCACAGACCTTTAGCTCTTTTCCAATTCCCTCAATCATATCTTCTTTCTTCTTGTCCGTCCAAACTTTATCGATTTCCAACATCTGTCTCATTAGCTCCATAACAGGTCGCAAAGATTCACGAAGTGTATCTAGACTGCCCTTCTGGTTAAGAGATTCCATAATCCAAGGATCGGAGAAACTGTCCCAAATCCCTCCGGTATCCTTGATGCCACGTGGGAAAGCAGGCAGGCACTTGCTCTCGGATGGGTCATGGAGATAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTCAATACTCACGTTTTCAAC</pcr_primer_p1>
		<pcr_primer_p2>ATCTGGATTCAATCTACAAGTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGTCAATACTCACGTTTTCAACCAAATTGTCAAACACTTCCGAATCAGAAAAAGTTTTGATTTCAGTGCTATTGAATATCTTGCCATATTTCTCGCAAATGATCTTTCTTAGGGATAGAAATTCATCAAAAACTTTCCTTGATGGTAGCTTGAACAGAGAAGATTCATCATGGATCTGCTTCCATTTTTTAGCAACTGTCATGAGAGGTTCGTAGTCTACTGTAGATGACTTGTAGATTGAATCCAGAT</canonical_amplicon>
		<polymorphic_amplicon>GAGTCAATACTCACGTTTTCAACCAAATTGTCAAACACTTCCGAATCAGAAAAAGTTTTGAWTTCAGTGCTATTGAATATCTTGCCATATTTCTCGCAAATGATCTTTCTTAGGGATAGAAATTCATCAAAAACTTTCCTTGATGGTAGCTTGAACAGAGAAGATTCATCATGGATCTGCTTCCATTTTTTAGCAACTGTCATGAGAGGTTCGTAGTCTACTGTAGATGACTTGTAGATTGAATCCAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13252</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>132909</contig_pos>
        <strand>+</strand>
        <context>TCTCCTCATC[G/T]AATCCAGTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CACTTCTCTTTCAAATATCGCTGATCTTCAAAGAAGTACGTCTCCTCATC</left_flank>
        <right_flank>AATCCAGTGAATTCCAGAATGTTCGAGTGGATGAAAGCGGCACGGACACC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATAAAACTTAACAAGTACTACAAAATGATACTATTTGGATTATTGTAGCTTGTCTATGAACAAAGTTACAAACCAAAAACGATCTGAGCTATGAGGTCACAACTTCATGTCCTCGTAACTTTGTTCATAGCCAAGATACAGTATTCCAAGTAGTATCATTTTGTAGTTCTCGTCGAGTTCTATTATATTTAATTATGGTTATTCAAAAAATACTCACTTCCCGTGCGACTCTTCTTCTCCACCTCAAGCTCCTTCTGATCCATGTTTTCCATAATTACCATCACTCGAACCATCTCTTTGTTATTCGTATTTTTGCAGAGGATCTCTTTTGCATCAAACGCCAGCAATCTGTCCCATGCAGCATATACATTTTGGTCCCTCTCTTGTTGTGTGATTCCTCCGTTCGCCACAACTTCCTCAGCATCTTGAACCTTCTTCTCGTACCCCCACTTCTCTTTCAAATATCGCTGATCTTCAAAGAAGTACGTCTCCTCATCTAATCCAGTGAATTCCAGAATGTTCGAGTGGATGAAAGCGGCACGGACACCTTGTATCACTTCAAAGTTTTCTGGCTTCTCTTCAGGATACACCATATCTCCGGAATCCTCAGTTTCTGGCCACATTGTTCGATCCGATCGTGTCGACGGAAGATAGTCAGATGCATCGGATTGAGTAGATAAGGTGGAAGTTCCGATGGATCTCAAATCGTCAGAATCATACAAAACGTTAGGTTCCTCCTTGAATTTCTTTGCAGTAAATGTTGGGACAGAATCTTATTGAAACTCTCCAGATTCTCATCTTTGCTCATATTGTTGACTTCCTTGAAAACGTGAGCAGCATGGGATTTCATAAGATCGAAGATCGTCGTCATCCCATTTTCCAGCACTTCTTGGGTTCTATTCGAGTCAATACTCACGTTTTCAACCAAATTGTCAAACACTTCCGAATCAGAAAAAGTTTTGATTTCAGTGCTATTGAATATCTTGCCATATTTCTCG</canonical>
            <polymorphic>TGATAAAACTTAACAAGTACTACAAAATGATACTATTTGGATTATTGTAGCTTGTCTATGAACAAAGTTACAAACCAAAAACGATCTGAGCTATGAGGTCACAACTTCATGTCCTCGTAACTTTGTTCATAGCCAAGATACAGTATTCCAAGTAGTATCATTTTGTAGTTCTCGTCGAGTTCTATTATATTTAATTATGGTTATTCAAAAAATACTCACTTCCCGTGCGACTCTTCTTCTCCACCTCAAGCTCCTTCTGATCCATGTTTTCCATAATTACCATCACTCGAACCATCTCTTTGTTATTCGTATTTTTGCAGAGGATCTCTTTTGCATCAAACGCCAGCAATCTGTCCCATGCAGCATATACATTTTGGTCCCTCTCTTGTTGTGTGATTCCTCCGTTCGCCACAACTTCCTCAGCATCTTGAACCTTCTTCTCGTACCCCCACTTCTCTTTCAAATATCGCTGATCTTCAAAGAAGTACGTCTCCTCATCKAATCCAGTGAATTCCAGAATGTTCGAGTGGATGAAAGCGGCACGGACACCTTGTATCACTTCAAAGTTTTCTGGCTTCTCTTCAGGATACACCATATCTCCGGAATCCTCAGTTTCTGGCCACATTGTTCGATCCGATCGTGTCGACGGAAGATAGTCAGATGCATCGGATTGAGTAGATAAGGTGGAAGTTCCGATGGATCTCAAATCGTCAGAATCATACAAAACGTTAGGTTCCTCCTTGAATTTCTTTGCAGTAAATGTTGGGACAGAATCTTATTGAAACTCTCCAGATTCTCATCTTTGCTCATATTGTTGACTTCCTTGAAAACGTGAGCAGCATGGGATTTCATAAGATCGAAGATCGTCGTCATCCCATTTTCCAGCACTTCTTGGGTTCTATTCGAGTCAATACTCACGTTTTCAACCAAATTGTCAAACACTTCCGAATCAGAAAAAGTTTTGATTTCAGTGCTATTGAATATCTTGCCATATTTCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATACATTTTGGTCCCTCTCTT</pcr_primer_p1>
		<pcr_primer_p2>GATTCCGGAGATATGGTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATATACATTTTGGTCCCTCTCTTGTTGTGTGATTCCTCCGTTCGCCACAACTTCCTCAGCATCTTGAACCTTCTTCTCGTACCCCCACTTCTCTTTCAAATATCGCTGATCTTCAAAGAAGTACGTCTCCTCATCTAATCCAGTGAATTCCAGAATGTTCGAGTGGATGAAAGCGGCACGGACACCTTGTATCACTTCAAAGTTTTCTGGCTTCTCTTCAGGATACACCATATCTCCGGAATC</canonical_amplicon>
		<polymorphic_amplicon>ATATACATTTTGGTCCCTCTCTTGTTGTGTGATTCCTCCGTTCGCCACAACTTCCTCAGCATCTTGAACCTTCTTCTCGTACCCCCACTTCTCTTTCAAATATCGCTGATCTTCAAAGAAGTACGTCTCCTCATCKAATCCAGTGAATTCCAGAATGTTCGAGTGGATGAAAGCGGCACGGACACCTTGTATCACTTCAAAGTTTTCTGGCTTCTCTTCAGGATACACCATATCTCCGGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13283</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>139111</contig_pos>
        <strand>+</strand>
        <context>CTATTAAAGA[A/G]TTATGGCACT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATAGTGGCCTTCTATTAAGGAGCTTACGGCGAATGGCATCTATTAAAGA</left_flank>
        <right_flank>TTATGGCACTACCTCAATTTAGAATGAAAAAAGTCATTCCCTGGACATCT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCACAACAAAAAGAAGAGGGGAATCTGATATTTGAATGTCTTTTTTTGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCTGTGAACTGATATTAAAAGTTTATTCTGAATAACATGTTGATATGGTTTTCGGGCTTTTTGAAGAGTTTTGTTTTGCATGGAGGTGGTATTCTACAAGAGAGTTGGTATTTTGCAGAAAAAAAGCCGGATATCAGCCTTTCCCTGACATCGAAACGTAAACACCAATAGAAAGCCGCCCTTTACTTTGAGCCCATGCATGTATCTCGGTTCCTGTAAAAGATATCAAAAAGCGGTCAATTGATAAAATGTTTATCATAATATCACCAATATTTTATCTGCTGACATCTTTTTGATATCTTTCACAGGAAGTGAGATATATGAACGAGAATTTGAAAGTATATAGTGGCCTTCTATTAAGGAGCTTACGGCGAATGGCATCTATTAAAGAGTTATGGCACTACCTCAATTTAGAATGAAAAAAGTCATTCCCTGGACATCTCGAAAAAAATTTTGGTCTCAAGATTAACGGGTCCAGACACCCCATAAAAGTGAATTTAGTGAAATAGAGACGTCACACGAGAAAAAAAAACGAGGCCCGTAATTCGATAGAATGCACTTTTTTTTCTCGTCGGAAGAGATGAGGTGTCGAATGGAAGAAAAAAAAACGCATCATAACATAAATCGGGGGATTTCAAATCAAAAAGTTAATGCTTTTGGGCTTCCTCTTCTTCTACTTTTTCTTCTTCTTTGAAACCGGTTGAAGCGAAGATTATTACAACTTTCCTCACACTTTTTTCTGATTGATATCCTCTTTCCGTTGTATTTTTACTTCGCCTGATTTACGATGATTCGCGTGACAGGGATGTTGGGAAGGATAAGGATTTTTAAAGGAGCATAAAAATTTTTTTCATACTGGGCTCAAATTTAGAGTGCAAAAACTCAAATAATT</canonical>
            <polymorphic>GTCACAACAAAAAGAAGAGGGGAATCTGATATTTGAATGTCTTTTTTTGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCTGTGAACTGATATTAAAAGTTTATTCTGAATAACATGTTGATATGGTTTTCGGGCTTTTTGAAGAGTTTTGTTTTGCATGGAGGTGGTATTCTACAAGAGAGTTGGTATTTTGCAGAAAAAAAGCCGGATATCAGCCTTTCCCTGACATCGAAACGTAAACACCAATAGAAAGCCGCCCTTTACTTTGAGCCCATGCATGTATCTCGGTTCCTGTAAAAGATATCAAAAAGCGGTCAATTGATAAAATGTTTATCATAATATCACCAATATTTTATCTGCTGACATCTTTTTGATATCTTTCACAGGAAGTGAGATATATGAACGAGAATTTGAAAGTATATAGTGGCCTTCTATTAAGGAGCTTACGGCGAATGGCATCTATTAAAGARTTATGGCACTACCTCAATTTAGAATGAAAAAAGTCATTCCCTGGACATCTCGAAAAAAATTTTGGTCTCAAGATTAACGGGTCCAGACACCCCATAAAAGTGAATTTAGTGAAATAGAGACGTCACACGAGAAAAAAAAACGAGGCCCGTAATTCGATAGAATGCACTTTTTTTTCTCGTCGGAAGAGATGAGGTGTCGAATGGAAGAAAAAAAAACGCATCATAACATAAATCGGGGGATTTCAAATCAAAAAGTTAATGCTTTTGGGCTTCCTCTTCTTCTACTTTTTCTTCTTCTTTGAAACCGGTTGAAGCGAAGATTATTACAACTTTCCTCACACTTTTTTCTGATTGATATCCTCTTTCCGTTGTATTTTTACTTCGCCTGATTTACGATGATTCGCGTGACAGGGATGTTGGGAAGGATAAGGATTTTTAAAGGAGCATAAAAATTTTTTTCATACTGGGCTCAAATTTAGAGTGCAAAAACTCAAATAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATATCAGCCTTTCCCTGAC</pcr_primer_p1>
		<pcr_primer_p2>GACCCGTTAATCTTGAGACC</pcr_primer_p2>
		<pcr_amplicon_size>346</pcr_amplicon_size>
		<canonical_amplicon>GATATCAGCCTTTCCCTGACATCGAAACGTAAACACCAATAGAAAGCCGCCCTTTACTTTGAGCCCATGCATGTATCTCGGTTCCTGTAAAAGATATCAAAAAGCGGTCAATTGATAAAATGTTTATCATAATATCACCAATATTTTATCTGCTGACATCTTTTTGATATCTTTCACAGGAAGTGAGATATATGAACGAGAATTTGAAAGTATATAGTGGCCTTCTATTAAGGAGCTTACGGCGAATGGCATCTATTAAAGAGTTATGGCACTACCTCAATTTAGAATGAAAAAAGTCATTCCCTGGACATCTCGAAAAAAATTTTGGTCTCAAGATTAACGGGTC</canonical_amplicon>
		<polymorphic_amplicon>GATATCAGCCTTTCCCTGACATCGAAACGTAAACACCAATAGAAAGCCGCCCTTTACTTTGAGCCCATGCATGTATCTCGGTTCCTGTAAAAGATATCAAAAAGCGGTCAATTGATAAAATGTTTATCATAATATCACCAATATTTTATCTGCTGACATCTTTTTGATATCTTTCACAGGAAGTGAGATATATGAACGAGAATTTGAAAGTATATAGTGGCCTTCTATTAAGGAGCTTACGGCGAATGGCATCTATTAAAGARTTATGGCACTACCTCAATTTAGAATGAAAAAAGTCATTCCCTGGACATCTCGAAAAAAATTTTGGTCTCAAGATTAACGGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13311</snp_id>
        <super_contig>c007401523.Contig1</super_contig>
        <contig_pos>33654</contig_pos>
        <strand>+</strand>
        <context>AAACTCTGAA[A/G]TGTTGTGACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTCTGGACGAATCTGGAATTCATTTTTAAAATTAAAGTTAAACTCTGAA</left_flank>
        <right_flank>TGTTGTGACAAGTCTCTTACCGACACAAAATGATCCTGGTAAACTGCTCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAGAAACAAAGAAGAAGGATTTCCATTATTATTCCGACCAGACACATCCAGACAACTTGCACGAATATGGTAGCAAATGTCGGCACGCTTTCAGAAATTGGTCAATATAGATTACTGTAAATCCTGTCATTCGGGGTTCTAAGTCATGCACGTCAATTCGAACGTTGTACAGATGTAGTTCGCGTTCATGAGGTCTAAAAAAGAGGGGTGTTGGGCTTGGAATCGATAAAACTCAATGCTTACCTTAATAAATCAGTTGCCCACCATCTTCCGTCGGAATCCATTCCCTTCCCTGGAACTTTTTTATCCTGGTTTTGTGGCATGTAGGTCAGCTGAATAACATTATCTTTCATAATACTGTGAACACTGAACAAACTGATTCAATTTTGTGCCATGGAAACTCATAGGGTAGCAAGGAAGGGATGAAGTATTTTTTGACTACCAAGCAGTCTGGACGAATCTGGAATTCATTTTTAAAATTAAAGTTAAACTCTGAAGTGTTGTGACAAGTCTCTTACCGACACAAAATGATCCTGGTAAACTGCTCGTGGGTCCTTTAGCAACTCGTGCTTCTTTTCCTGTTTTTCCTGCACTTCCTTGCCTTGTTTAGTCATTAGAAAAACTCGCATTTCATTCGCCATTCTTTAAATAAAACTTTTGGAAAGCTGAAAATGCTTGAATATATTGGAAAGGGATGAAATCAAGGTTTTTTTTCAAACTGAAATCGAATATATCAGCTGCATGATCAACATAAAAAACGAAGAGGATGAAAATATCAGGTGTATCTATGATTTGTATTTTTTTTTCATTAGTGGACACTTGTTATGGCATATGCCTCTCCCATTTTGTCTCGGATTTGTCTGGATAATCTTTTCAAATATACGACTTCTTCTTCTTCTTTTCTCTACCCCCTTCAAATAAATCCAACGGATTACAGCTGAATAGGAAAAGAGAAATTTGGCTTGTTCGATTTTTCAGCACGACTAGAAAATATTGTT</canonical>
            <polymorphic>AAAAGAAACAAAGAAGAAGGATTTCCATTATTATTCCGACCAGACACATCCAGACAACTTGCACGAATATGGTAGCAAATGTCGGCACGCTTTCAGAAATTGGTCAATATAGATTACTGTAAATCCTGTCATTCGGGGTTCTAAGTCATGCACGTCAATTCGAACGTTGTACAGATGTAGTTCGCGTTCATGAGGTCTAAAAAAGAGGGGTGTTGGGCTTGGAATCGATAAAACTCAATGCTTACCTTAATAAATCAGTTGCCCACCATCTTCCGTCGGAATCCATTCCCTTCCCTGGAACTTTTTTATCCTGGTTTTGTGGCATGTAGGTCAGCTGAATAACATTATCTTTCATAATACTGTGAACACTGAACAAACTGATTCAATTTTGTGCCATGGAAACTCATAGGGTAGCAAGGAAGGGATGAAGTATTTTTTGACTACCAAGCAGTCTGGACGAATCTGGAATTCATTTTTAAAATTAAAGTTAAACTCTGAARTGTTGTGACAAGTCTCTTACCGACACAAAATGATCCTGGTAAACTGCTCGTGGGTCCTTTAGCAACTCGTGCTTCTTTTCCTGTTTTTCCTGCACTTCCTTGCCTTGTTTAGTCATTAGAAAAACTCGCATTTCATTCGCCATTCTTTAAATAAAACTTTTGGAAAGCTGAAAATGCTTGAATATATTGGAAAGGGATGAAATCAAGGTTTTTTTTCAAACTGAAATCGAATATATCAGCTGCATGATCAACATAAAAAACGAAGAGGATGAAAATATCAGGTGTATCTATGATTTGTATTTTTTTTTCATTAGTGGACACTTGTTATGGCATATGCCTCTCCCATTTTGTCTCGGATTTGTCTGGATAATCTTTTCAAATATACGACTTCTTCTTCTTCTTTTCTCTACCCCCTTCAAATAAATCCAACGGATTACAGCTGAATAGGAAAAGAGAAATTTGGCTTGTTCGATTTTTCAGCACGACTAGAAAATATTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>190 162 109 65 60 56 53 46 43 32 27 25 24 23 19 18 18 17 5 4 4</canonical_bands>
                <polymorphic_bands>190 162 114 65 60 56 53 46 43 32 27 25 24 23 19 18 18 17 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACACTGAACAAACTGATTCAA</pcr_primer_p1>
		<pcr_primer_p2>GACTAAACAAGGCAAGGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACACTGAACAAACTGATTCAATTTTGTGCCATGGAAACTCATAGGGTAGCAAGGAAGGGATGAAGTATTTTTTGACTACCAAGCAGTCTGGACGAATCTGGAATTCATTTTTAAAATTAAAGTTAAACTCTGAAGTGTTGTGACAAGTCTCTTACCGACACAAAATGATCCTGGTAAACTGCTCGTGGGTCCTTTAGCAACTCGTGCTTCTTTTCCTGTTTTTCCTGCACTTCCTTGCCTTGTTTAGTC</canonical_amplicon>
		<polymorphic_amplicon>AACACTGAACAAACTGATTCAATTTTGTGCCATGGAAACTCATAGGGTAGCAAGGAAGGGATGAAGTATTTTTTGACTACCAAGCAGTCTGGACGAATCTGGAATTCATTTTTAAAATTAAAGTTAAACTCTGAARTGTTGTGACAAGTCTCTTACCGACACAAAATGATCCTGGTAAACTGCTCGTGGGTCCTTTAGCAACTCGTGCTTCTTTTCCTGTTTTTCCTGCACTTCCTTGCCTTGTTTAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13312</snp_id>
        <super_contig>c007401633.Contig1</super_contig>
        <contig_pos>17475</contig_pos>
        <strand></strand>
        <context>AGAATCAATA[C/G]ATAAAAATAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCAGACTCTTCTTCTTCTTCTTTCAAAGTTACAAAAAATCAGAATCAATA</left_flank>
        <right_flank>ATAAAAATATTTATGCAAAGAATAAAAACACAAAAATAGTTCAATCAACT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATAAAACGTCACTAACCTGCATTCAAATCTTCAACGCTTTCTGAACAGGTTGTGGGCTCAATTTCACATGGTTCAGTCTTCACATTTTGTGGTTCTTCCGATTGTTCCTCATTTTCGTCTTTTTCTTCGTCTTCAGAATCTGCAACGTTCAATTTAAAACTTATCAAAGCTATTCAAAATTACCTGAGCCCAGTAGAGCTAACTGCCTGAGAATAGCTTCTCGTTCAGCGATCAGTGCTTCTTCATATTTTCCCACTGACTCGGATTCCATAATTACTGGTTTCAAAGGATGAACCGAGACTAATGCAACTGCACGGTTAGCATATACTCGCAGCATATACTCGCAGCGAGAGAGTTGTGTTGAAGAGACGCAGGCGACGATAGAGATAAATAACCGCGCCAATTCAAATAAAATCCTGAATATATTATTATAAGAAACATTTTTGTTCAGACTCTTCTTCTTCTTCTTTCAAAGTTACAAAAAATCAGAATCAATACATAAAAATATTTATGCAAAGAATAAAAACACAAAAATAGTTCAATCAACTTTCCTTCCTCGTTTCAACCAGTCATCTCCTCTCTTTGGCTTACAGATCGAATATGTATTTCCTTCAGGACAAAGAGGTTTCGTCAAAACTATTTCTGGCGTTTTCTCGCACTCAGTATAACACGACTCGAATTGCAAAGTTTTGTTCTGAAAATTTTATCAATTATACAATAAACTTGGTACTCCTACATGTTTTACAAAACACCCTGGCCCCTCTTGGAACATTTTCTTAAATTCTGTCATCCAGGTTCCCTTGGTATAAGATGAGCTTCCTGTGAACGAACTTCTCATATCTGAATCGTCTCTTCTGTGCAGAAGCATGCACGAACTTCTGCAATTTGAAAGCTTAGATTTCCAGAAGGACACAGAAACTGACTCGGTATTCATGAATAGTCTGGATTCTACGAAAAACTGAGAAGGATCGTTGAAAAGAAGATCATGGTATAAATGA</canonical>
            <polymorphic>TCATAAAACGTCACTAACCTGCATTCAAATCTTCAACGCTTTCTGAACAGGTTGTGGGCTCAATTTCACATGGTTCAGTCTTCACATTTTGTGGTTCTTCCGATTGTTCCTCATTTTCGTCTTTTTCTTCGTCTTCAGAATCTGCAACGTTCAATTTAAAACTTATCAAAGCTATTCAAAATTACCTGAGCCCAGTAGAGCTAACTGCCTGAGAATAGCTTCTCGTTCAGCGATCAGTGCTTCTTCATATTTTCCCACTGACTCGGATTCCATAATTACTGGTTTCAAAGGATGAACCGAGACTAATGCAACTGCACGGTTAGCATATACTCGCAGCATATACTCGCAGCGAGAGAGTTGTGTTGAAGAGACGCAGGCGACGATAGAGATAAATAACCGCGCCAATTCAAATAAAATCCTGAATATATTATTATAAGAAACATTTTTGTTCAGACTCTTCTTCTTCTTCTTTCAAAGTTACAAAAAATCAGAATCAATASATAAAAATATTTATGCAAAGAATAAAAACACAAAAATAGTTCAATCAACTTTCCTTCCTCGTTTCAACCAGTCATCTCCTCTCTTTGGCTTACAGATCGAATATGTATTTCCTTCAGGACAAAGAGGTTTCGTCAAAACTATTTCTGGCGTTTTCTCGCACTCAGTATAACACGACTCGAATTGCAAAGTTTTGTTCTGAAAATTTTATCAATTATACAATAAACTTGGTACTCCTACATGTTTTACAAAACACCCTGGCCCCTCTTGGAACATTTTCTTAAATTCTGTCATCCAGGTTCCCTTGGTATAAGATGAGCTTCCTGTGAACGAACTTCTCATATCTGAATCGTCTCTTCTGTGCAGAAGCATGCACGAACTTCTGCAATTTGAAAGCTTAGATTTCCAGAAGGACACAGAAACTGACTCGGTATTCATGAATAGTCTGGATTCTACGAAAAACTGAGAAGGATCGTTGAAAAGAAGATCATGGTATAAATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGCGACGATAGAGATAAATAAC</pcr_primer_p1>
		<pcr_primer_p2>CTTTGTCCTGAAGGAAATACATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGCGACGATAGAGATAAATAACCGCGCCAATTCAAATAAAATCCTGAATATATTATTATAAGAAACATTTTTGTTCAGACTCTTCTTCTTCTTCTTTCAAAGTTACAAAAAATCAGAATCAATACATAAAAATATTTATGCAAAGAATAAAAACACAAAAATAGTTCAATCAACTTTCCTTCCTCGTTTCAACCAGTCATCTCCTCTCTTTGGCTTACAGATCGAATATGTATTTCCTTCAGGACAAAG</canonical_amplicon>
		<polymorphic_amplicon>AGGCGACGATAGAGATAAATAACCGCGCCAATTCAAATAAAATCCTGAATATATTATTATAAGAAACATTTTTGTTCAGACTCTTCTTCTTCTTCTTTCAAAGTTACAAAAAATCAGAATCAATASATAAAAATATTTATGCAAAGAATAAAAACACAAAAATAGTTCAATCAACTTTCCTTCCTCGTTTCAACCAGTCATCTCCTCTCTTTGGCTTACAGATCGAATATGTATTTCCTTCAGGACAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13313</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>68747</contig_pos>
        <strand>+</strand>
        <context>GGCATTGACC[G/T]ATTTCAGTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGAGCTGGACGCATTCCAAGTTTCAGACAGAGTGAGGAAAGGCATTGACC</left_flank>
        <right_flank>ATTTCAGTGGATCCATCAAATTCCACGATTTGATATTCAGCATTCGGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAGTTTCTTATTTTTCAGACTTACCTTAAACTTTTGATGCATGCGACATCTAACATTTTCGATGGATAAAAACGCTGGCTAATAAAATCAAACTGCTGATCAGACAATGATTGATTCGCATCTCCAAATACCATTTGAGCATAGAGGGCTGCCAAACTCTCACACAGTTGATTGCTCAGCGGTATTCTTCCATTAACTATCTCTTCGGATGCTCTCCACACTAAGAACTGTCGTTCGATTGGTGTTTCAGTACTTTTCAAGTGACTCCAATAATGACGCATTCGAAGAGAAAGTGCAGCTGCACAATCTGATGATATTCTTCCTCGTTGAGCATCTCTTGAACGAGATTCCCACGTTGATAGGGAATCACACAGTTTCTGTTTTCCTTTGAGAAGAATAAGACTGTGAGTGAGTGGATCGTTCATGTAAAGAGCATATCCAGAGAGAAGAGCTGGACGCATTCCAAGTTTCAGACAGAGTGAGGAAAGGCATTGACCTATTTCAGTGGATCCATCAAATTCCACGATTTGATATTCAGCATTCGGAAGTTTGACAGATATCGAATGAGGGAATTTAGTTCTGGTAACATCTCTTGTGAGAATAGATGTTACTTCCAAACGACTCGGTCCTTCTTGTCTTCCTCCGACACGTAGACATCTATCCAATGCACTTTCACAAAATATTGCCATTCGAGTTTCGTCAGATTCGTTTCTGAGAGTCAGATAGTTTTAAGAAAGTAGTCCCGGATATAATGACTTACGGTAAATCGACCCATCGAGAAATATGACGTTTCAGAAGCCATAGTAAAGAATACTGTTTTGGAAGGAATAACGGGATTGTTAGAGCTAGAAGTTTCCATCCTTGTAGTCCAAATGGCATAGATCCACTAGTCATTTTGATCAGTTGAGAATATACTTCATTTCTCAAATATTCTTGTTGAACTGCAGTTGAAAGAATATTTTGTGCCAGGTCTATATGATATTGAGTCGCCTGAGGAC</canonical>
            <polymorphic>GGAAGTTTCTTATTTTTCAGACTTACCTTAAACTTTTGATGCATGCGACATCTAACATTTTCGATGGATAAAAACGCTGGCTAATAAAATCAAACTGCTGATCAGACAATGATTGATTCGCATCTCCAAATACCATTTGAGCATAGAGGGCTGCCAAACTCTCACACAGTTGATTGCTCAGCGGTATTCTTCCATTAACTATCTCTTCGGATGCTCTCCACACTAAGAACTGTCGTTCGATTGGTGTTTCAGTACTTTTCAAGTGACTCCAATAATGACGCATTCGAAGAGAAAGTGCAGCTGCACAATCTGATGATATTCTTCCTCGTTGAGCATCTCTTGAACGAGATTCCCACGTTGATAGGGAATCACACAGTTTCTGTTTTCCTTTGAGAAGAATAAGACTGTGAGTGAGTGGATCGTTCATGTAAAGAGCATATCCAGAGAGAAGAGCTGGACGCATTCCAAGTTTCAGACAGAGTGAGGAAAGGCATTGACCKATTTCAGTGGATCCATCAAATTCCACGATTTGATATTCAGCATTCGGAAGTTTGACAGATATCGAATGAGGGAATTTAGTTCTGGTAACATCTCTTGTGAGAATAGATGTTACTTCCAAACGACTCGGTCCTTCTTGTCTTCCTCCGACACGTAGACATCTATCCAATGCACTTTCACAAAATATTGCCATTCGAGTTTCGTCAGATTCGTTTCTGAGAGTCAGATAGTTTTAAGAAAGTAGTCCCGGATATAATGACTTACGGTAAATCGACCCATCGAGAAATATGACGTTTCAGAAGCCATAGTAAAGAATACTGTTTTGGAAGGAATAACGGGATTGTTAGAGCTAGAAGTTTCCATCCTTGTAGTCCAAATGGCATAGATCCACTAGTCATTTTGATCAGTTGAGAATATACTTCATTTCTCAAATATTCTTGTTGAACTGCAGTTGAAAGAATATTTTGTGCCAGGTCTATATGATATTGAGTCGCCTGAGGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTTCTGTTTTCCTTTGAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TCGTTTGGAAGTAACATCTATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGTTTCTGTTTTCCTTTGAGAAGAATAAGACTGTGAGTGAGTGGATCGTTCATGTAAAGAGCATATCCAGAGAGAAGAGCTGGACGCATTCCAAGTTTCAGACAGAGTGAGGAAAGGCATTGACCTATTTCAGTGGATCCATCAAATTCCACGATTTGATATTCAGCATTCGGAAGTTTGACAGATATCGAATGAGGGAATTTAGTTCTGGTAACATCTCTTGTGAGAATAGATGTTACTTCCAAACGA</canonical_amplicon>
		<polymorphic_amplicon>AGTTTCTGTTTTCCTTTGAGAAGAATAAGACTGTGAGTGAGTGGATCGTTCATGTAAAGAGCATATCCAGAGAGAAGAGCTGGACGCATTCCAAGTTTCAGACAGAGTGAGGAAAGGCATTGACCKATTTCAGTGGATCCATCAAATTCCACGATTTGATATTCAGCATTCGGAAGTTTGACAGATATCGAATGAGGGAATTTAGTTCTGGTAACATCTCTTGTGAGAATAGATGTTACTTCCAAACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13314</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>68927</contig_pos>
        <strand>+</strand>
        <context>CACTTTCACA[A/G]AATATTGCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTTCTTGTCTTCCTCCGACACGTAGACATCTATCCAATGCACTTTCACA</left_flank>
        <right_flank>AATATTGCCATTCGAGTTTCGTCAGATTCGTTTCTGAGAGTCAGATAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGGTATTCTTCCATTAACTATCTCTTCGGATGCTCTCCACACTAAGAACTGTCGTTCGATTGGTGTTTCAGTACTTTTCAAGTGACTCCAATAATGACGCATTCGAAGAGAAAGTGCAGCTGCACAATCTGATGATATTCTTCCTCGTTGAGCATCTCTTGAACGAGATTCCCACGTTGATAGGGAATCACACAGTTTCTGTTTTCCTTTGAGAAGAATAAGACTGTGAGTGAGTGGATCGTTCATGTAAAGAGCATATCCAGAGAGAAGAGCTGGACGCATTCCAAGTTTCAGACAGAGTGAGGAAAGGCATTGACCTATTTCAGTGGATCCATCAAATTCCACGATTTGATATTCAGCATTCGGAAGTTTGACAGATATCGAATGAGGGAATTTAGTTCTGGTAACATCTCTTGTGAGAATAGATGTTACTTCCAAACGACTCGGTCCTTCTTGTCTTCCTCCGACACGTAGACATCTATCCAATGCACTTTCACAAAATATTGCCATTCGAGTTTCGTCAGATTCGTTTCTGAGAGTCAGATAGTTTTAAGAAAGTAGTCCCGGATATAATGACTTACGGTAAATCGACCCATCGAGAAATATGACGTTTCAGAAGCCATAGTAAAGAATACTGTTTTGGAAGGAATAACGGGATTGTTAGAGCTAGAAGTTTCCATCCTTGTAGTCCAAATGGCATAGATCCACTAGTCATTTTGATCAGTTGAGAATATACTTCATTTCTCAAATATTCTTGTTGAACTGCAGTTGAAAGAATATTTTGTGCCAGGTCTATATGATATTGAGTCGCCTGAGGACGCATCAGAACCGATACGAACAATTGACATGCTTTTGCGATTTCCAATGTCTTTTTTCGCTCACTCGGATCGACGGAAGTCATTGTGTCTTTTGGAATTTCTTCTCCAGATGTGAATAACAAATCTTTCCAGAGTGGAGAATCTGCATATCCTTTTTTGAAAATTATCTCTGCATTTCAAA</canonical>
            <polymorphic>GCGGTATTCTTCCATTAACTATCTCTTCGGATGCTCTCCACACTAAGAACTGTCGTTCGATTGGTGTTTCAGTACTTTTCAAGTGACTCCAATAATGACGCATTCGAAGAGAAAGTGCAGCTGCACAATCTGATGATATTCTTCCTCGTTGAGCATCTCTTGAACGAGATTCCCACGTTGATAGGGAATCACACAGTTTCTGTTTTCCTTTGAGAAGAATAAGACTGTGAGTGAGTGGATCGTTCATGTAAAGAGCATATCCAGAGAGAAGAGCTGGACGCATTCCAAGTTTCAGACAGAGTGAGGAAAGGCATTGACCTATTTCAGTGGATCCATCAAATTCCACGATTTGATATTCAGCATTCGGAAGTTTGACAGATATCGAATGAGGGAATTTAGTTCTGGTAACATCTCTTGTGAGAATAGATGTTACTTCCAAACGACTCGGTCCTTCTTGTCTTCCTCCGACACGTAGACATCTATCCAATGCACTTTCACARAATATTGCCATTCGAGTTTCGTCAGATTCGTTTCTGAGAGTCAGATAGTTTTAAGAAAGTAGTCCCGGATATAATGACTTACGGTAAATCGACCCATCGAGAAATATGACGTTTCAGAAGCCATAGTAAAGAATACTGTTTTGGAAGGAATAACGGGATTGTTAGAGCTAGAAGTTTCCATCCTTGTAGTCCAAATGGCATAGATCCACTAGTCATTTTGATCAGTTGAGAATATACTTCATTTCTCAAATATTCTTGTTGAACTGCAGTTGAAAGAATATTTTGTGCCAGGTCTATATGATATTGAGTCGCCTGAGGACGCATCAGAACCGATACGAACAATTGACATGCTTTTGCGATTTCCAATGTCTTTTTTCGCTCACTCGGATCGACGGAAGTCATTGTGTCTTTTGGAATTTCTTCTCCAGATGTGAATAACAAATCTTTCCAGAGTGGAGAATCTGCATATCCTTTTTTGAAAATTATCTCTGCATTTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCTGGTAACATCTCTTGTGAG</pcr_primer_p1>
		<pcr_primer_p2>CCTTCCAAAACAGTATTCTTTACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTCTGGTAACATCTCTTGTGAGAATAGATGTTACTTCCAAACGACTCGGTCCTTCTTGTCTTCCTCCGACACGTAGACATCTATCCAATGCACTTTCACAAAATATTGCCATTCGAGTTTCGTCAGATTCGTTTCTGAGAGTCAGATAGTTTTAAGAAAGTAGTCCCGGATATAATGACTTACGGTAAATCGACCCATCGAGAAATATGACGTTTCAGAAGCCATAGTAAAGAATACTGTTTTGGAAGG</canonical_amplicon>
		<polymorphic_amplicon>GTTCTGGTAACATCTCTTGTGAGAATAGATGTTACTTCCAAACGACTCGGTCCTTCTTGTCTTCCTCCGACACGTAGACATCTATCCAATGCACTTTCACARAATATTGCCATTCGAGTTTCGTCAGATTCGTTTCTGAGAGTCAGATAGTTTTAAGAAAGTAGTCCCGGATATAATGACTTACGGTAAATCGACCCATCGAGAAATATGACGTTTCAGAAGCCATAGTAAAGAATACTGTTTTGGAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13315</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>68965</contig_pos>
        <strand>+</strand>
        <context>TCGTTTCTGA[A/G]AGTCAGATAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCACTTTCACAAAATATTGCCATTCGAGTTTCGTCAGATTCGTTTCTGA</left_flank>
        <right_flank>AGTCAGATAGTTTTAAGAAAGTAGTCCCGGATATAATGACTTACGGTAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACACTAAGAACTGTCGTTCGATTGGTGTTTCAGTACTTTTCAAGTGACTCCAATAATGACGCATTCGAAGAGAAAGTGCAGCTGCACAATCTGATGATATTCTTCCTCGTTGAGCATCTCTTGAACGAGATTCCCACGTTGATAGGGAATCACACAGTTTCTGTTTTCCTTTGAGAAGAATAAGACTGTGAGTGAGTGGATCGTTCATGTAAAGAGCATATCCAGAGAGAAGAGCTGGACGCATTCCAAGTTTCAGACAGAGTGAGGAAAGGCATTGACCTATTTCAGTGGATCCATCAAATTCCACGATTTGATATTCAGCATTCGGAAGTTTGACAGATATCGAATGAGGGAATTTAGTTCTGGTAACATCTCTTGTGAGAATAGATGTTACTTCCAAACGACTCGGTCCTTCTTGTCTTCCTCCGACACGTAGACATCTATCCAATGCACTTTCACAAAATATTGCCATTCGAGTTTCGTCAGATTCGTTTCTGAGAGTCAGATAGTTTTAAGAAAGTAGTCCCGGATATAATGACTTACGGTAAATCGACCCATCGAGAAATATGACGTTTCAGAAGCCATAGTAAAGAATACTGTTTTGGAAGGAATAACGGGATTGTTAGAGCTAGAAGTTTCCATCCTTGTAGTCCAAATGGCATAGATCCACTAGTCATTTTGATCAGTTGAGAATATACTTCATTTCTCAAATATTCTTGTTGAACTGCAGTTGAAAGAATATTTTGTGCCAGGTCTATATGATATTGAGTCGCCTGAGGACGCATCAGAACCGATACGAACAATTGACATGCTTTTGCGATTTCCAATGTCTTTTTTCGCTCACTCGGATCGACGGAAGTCATTGTGTCTTTTGGAATTTCTTCTCCAGATGTGAATAACAAATCTTTCCAGAGTGGAGAATCTGCATATCCTTTTTTGAAAATTATCTCTGCATTTCAAAATTTCACTCACCATTTGCAACATTTTCAGCCATCATTC</canonical>
            <polymorphic>CACACTAAGAACTGTCGTTCGATTGGTGTTTCAGTACTTTTCAAGTGACTCCAATAATGACGCATTCGAAGAGAAAGTGCAGCTGCACAATCTGATGATATTCTTCCTCGTTGAGCATCTCTTGAACGAGATTCCCACGTTGATAGGGAATCACACAGTTTCTGTTTTCCTTTGAGAAGAATAAGACTGTGAGTGAGTGGATCGTTCATGTAAAGAGCATATCCAGAGAGAAGAGCTGGACGCATTCCAAGTTTCAGACAGAGTGAGGAAAGGCATTGACCTATTTCAGTGGATCCATCAAATTCCACGATTTGATATTCAGCATTCGGAAGTTTGACAGATATCGAATGAGGGAATTTAGTTCTGGTAACATCTCTTGTGAGAATAGATGTTACTTCCAAACGACTCGGTCCTTCTTGTCTTCCTCCGACACGTAGACATCTATCCAATGCACTTTCACAAAATATTGCCATTCGAGTTTCGTCAGATTCGTTTCTGARAGTCAGATAGTTTTAAGAAAGTAGTCCCGGATATAATGACTTACGGTAAATCGACCCATCGAGAAATATGACGTTTCAGAAGCCATAGTAAAGAATACTGTTTTGGAAGGAATAACGGGATTGTTAGAGCTAGAAGTTTCCATCCTTGTAGTCCAAATGGCATAGATCCACTAGTCATTTTGATCAGTTGAGAATATACTTCATTTCTCAAATATTCTTGTTGAACTGCAGTTGAAAGAATATTTTGTGCCAGGTCTATATGATATTGAGTCGCCTGAGGACGCATCAGAACCGATACGAACAATTGACATGCTTTTGCGATTTCCAATGTCTTTTTTCGCTCACTCGGATCGACGGAAGTCATTGTGTCTTTTGGAATTTCTTCTCCAGATGTGAATAACAAATCTTTCCAGAGTGGAGAATCTGCATATCCTTTTTTGAAAATTATCTCTGCATTTCAAAATTTCACTCACCATTTGCAACATTTTCAGCCATCATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>491 279 225 5</canonical_bands>
                <polymorphic_bands>770 225 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>268 256 152 83 83 80 47 18 13</canonical_bands>
                <polymorphic_bands>281 256 152 83 83 80 47 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCTGGTAACATCTCTTGTGAG</pcr_primer_p1>
		<pcr_primer_p2>CCTTCCAAAACAGTATTCTTTACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTCTGGTAACATCTCTTGTGAGAATAGATGTTACTTCCAAACGACTCGGTCCTTCTTGTCTTCCTCCGACACGTAGACATCTATCCAATGCACTTTCACAAAATATTGCCATTCGAGTTTCGTCAGATTCGTTTCTGAGAGTCAGATAGTTTTAAGAAAGTAGTCCCGGATATAATGACTTACGGTAAATCGACCCATCGAGAAATATGACGTTTCAGAAGCCATAGTAAAGAATACTGTTTTGGAAGG</canonical_amplicon>
		<polymorphic_amplicon>GTTCTGGTAACATCTCTTGTGAGAATAGATGTTACTTCCAAACGACTCGGTCCTTCTTGTCTTCCTCCGACACGTAGACATCTATCCAATGCACTTTCACAAAATATTGCCATTCGAGTTTCGTCAGATTCGTTTCTGARAGTCAGATAGTTTTAAGAAAGTAGTCCCGGATATAATGACTTACGGTAAATCGACCCATCGAGAAATATGACGTTTCAGAAGCCATAGTAAAGAATACTGTTTTGGAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13316</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>79408</contig_pos>
        <strand></strand>
        <context>TTTTTAGTCA[A/C]ACCAGGAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTTGGGTGGGCTTCTATTAGAGGAAATATGGTACGTTAATTTTTAGTCA</left_flank>
        <right_flank>ACCAGGAAAGTTCCCAAAAAATGAACGCATGAACATGAATGCACAACAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAGAGGAAGAAGCGGACCACCAACATGAAAAAAAGTATGTAATTAATAAAGTTGGAGGAAAAAGAGAGTTGATGGATGACGATGAAAAGGGCGGTGACTTCTAGGTGGACCTTGAAGTTAGCTTTGAAATTGGGCAATTTAGGAATCGATAGATTTTCAAGAAATTCGATTCTTCGAATTTTCAGAAGAGATTTCAACTTTTCTAGATTTCAAAATTAAACAGACATAATACAAACATAATACCGCAAACGTTTTATCAGTTAAAATTTTTGGCCTTTTTGAAAGGAGCCAAAGTGATTTTTTTAAAATTACGGTACCGCGAAGCCGCCCAACTCTTCGGAGCCCACCCCAACCGTCAACTCTAGAAGCCCAAATGAGAAACATTTTATCCGTTGACAAATATTTGATATCTTTCCTAGGAATCGAGATTGCGCTCAAAGTTTACTTCTTGGGTGGGCTTCTATTAGAGGAAATATGGTACGTTAATTTTTAGTCAAACCAGGAAAGTTCCCAAAAAATGAACGCATGAACATGAATGCACAACAAAACTCTCAATTTATTGAGGTCACAAGGTCATGAGCACTTCTTAAAAGTACAACTCAGACCATTTGGGAGAGACATAAGTAGCCGTTTCGATTCTTGATACTCGTCGAACTCTCTTTTGACCTCTTCCGATTTGTTTAGTTTTTGCAAAACTAGTTGACCAAAAAGAAAAGAAAAAAGCTGTGCTAGCCGTTTTCGGAACCAATAAAATCTTGTATTTCATCCCTCTAGAGATGTTTTGAGACGACTCGATTTGAAATGCATAAGAAAACGAAAAACGGATAGCAAAATGACCGAAAGTGTCATAGTGGAATGGGGAAGGAAGAATAAGAAGAGCTTGAAGCTTATATTCACAACTGCATAGTAATTGCAAAATTAATGAGAATAAGAGTATATAGAATATGATGGATGAGGAAGGGAAGGATGAAGAGAACACTTGAAAGTGCGCGAAAAA</canonical>
            <polymorphic>AAGAAGAGGAAGAAGCGGACCACCAACATGAAAAAAAGTATGTAATTAATAAAGTTGGAGGAAAAAGAGAGTTGATGGATGACGATGAAAAGGGCGGTGACTTCTAGGTGGACCTTGAAGTTAGCTTTGAAATTGGGCAATTTAGGAATCGATAGATTTTCAAGAAATTCGATTCTTCGAATTTTCAGAAGAGATTTCAACTTTTCTAGATTTCAAAATTAAACAGACATAATACAAACATAATACCGCAAACGTTTTATCAGTTAAAATTTTTGGCCTTTTTGAAAGGAGCCAAAGTGATTTTTTTAAAATTACGGTACCGCGAAGCCGCCCAACTCTTCGGAGCCCACCCCAACCGTCAACTCTAGAAGCCCAAATGAGAAACATTTTATCCGTTGACAAATATTTGATATCTTTCCTAGGAATCGAGATTGCGCTCAAAGTTTACTTCTTGGGTGGGCTTCTATTAGAGGAAATATGGTACGTTAATTTTTAGTCAMACCAGGAAAGTTCCCAAAAAATGAACGCATGAACATGAATGCACAACAAAACTCTCAATTTATTGAGGTCACAAGGTCATGAGCACTTCTTAAAAGTACAACTCAGACCATTTGGGAGAGACATAAGTAGCCGTTTCGATTCTTGATACTCGTCGAACTCTCTTTTGACCTCTTCCGATTTGTTTAGTTTTTGCAAAACTAGTTGACCAAAAAGAAAAGAAAAAAGCTGTGCTAGCCGTTTTCGGAACCAATAAAATCTTGTATTTCATCCCTCTAGAGATGTTTTGAGACGACTCGATTTGAAATGCATAAGAAAACGAAAAACGGATAGCAAAATGACCGAAAGTGTCATAGTGGAATGGGGAAGGAAGAATAAGAAGAGCTTGAAGCTTATATTCACAACTGCATAGTAATTGCAAAATTAATGAGAATAAGAGTATATAGAATATGATGGATGAGGAAGGGAAGGATGAAGAGAACACTTGAAAGTGCGCGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTCTAGAAGCCCAAATGAG</pcr_primer_p1>
		<pcr_primer_p2>CCCAAATGGTCTGAGTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AACTCTAGAAGCCCAAATGAGAAACATTTTATCCGTTGACAAATATTTGATATCTTTCCTAGGAATCGAGATTGCGCTCAAAGTTTACTTCTTGGGTGGGCTTCTATTAGAGGAAATATGGTACGTTAATTTTTAGTCAAACCAGGAAAGTTCCCAAAAAATGAACGCATGAACATGAATGCACAACAAAACTCTCAATTTATTGAGGTCACAAGGTCATGAGCACTTCTTAAAAGTACAACTCAGACCATTTGGG</canonical_amplicon>
		<polymorphic_amplicon>AACTCTAGAAGCCCAAATGAGAAACATTTTATCCGTTGACAAATATTTGATATCTTTCCTAGGAATCGAGATTGCGCTCAAAGTTTACTTCTTGGGTGGGCTTCTATTAGAGGAAATATGGTACGTTAATTTTTAGTCAMACCAGGAAAGTTCCCAAAAAATGAACGCATGAACATGAATGCACAACAAAACTCTCAATTTATTGAGGTCACAAGGTCATGAGCACTTCTTAAAAGTACAACTCAGACCATTTGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13339</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>79369</contig_pos>
        <strand>+</strand>
        <context>cttgggtggg[A/C]ttctattaga</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATCTTTCCTAGGAATCGAGATTGCGCTCAAAGTTTACTTCTTGGGTGGG</left_flank>
        <right_flank>TTCTATTAGAGGAAATATGGTACGTTAATTTTTAGTCAAACCAGGAAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCTTGAAATGGAAAATTGGAAGAAAAAAAAAGAGAAAAAAGAAGAGGAAGAAGCGGACCACCAACATGAAAAAAAGTATGTAATTAATAAAGTTGGAGGAAAAAGAGAGTTGATGGATGACGATGAAAAGGGCGGTGACTTCTAGGTGGACCTTGAAGTTAGCTTTGAAATTGGGCAATTTAGGAATCGATAGATTTTCAAGAAATTCGATTCTTCGAATTTTCAGAAGAGATTTCAACTTTTCTAGATTTCAAAATTAAACAGACATAATACAAACATAATACCGCAAACGTTTTATCAGTTAAAATTTTTGGCCTTTTTGAAAGGAGCCAAAGTGATTTTTTTAAAATTACGGTACCGCGAAGCCGCCCAACTCTTCGGAGCCCACCCCAACCGTCAACTCTAGAAGCCCAAATGAGAAACATTTTATCCGTTGACAAATATTTGATATCTTTCCTAGGAATCGAGATTGCGCTCAAAGTTTACTTCTTGGGTGGGCTTCTATTAGAGGAAATATGGTACGTTAATTTTTAGTCAAACCAGGAAAGTTCCCAAAAAATGAACGCATGAACATGAATGCACAACAAAACTCTCAATTTATTGAGGTCACAAGGTCATGAGCACTTCTTAAAAGTACAACTCAGACCATTTGGGAGAGACATAAGTAGCCGTTTCGATTCTTGATACTCGTCGAACTCTCTTTTGACCTCTTCCGATTTGTTTAGTTTTTGCAAAACTAGTTGACCAAAAAGAAAAGAAAAAAGCTGTGCTAGCCGTTTTCGGAACCAATAAAATCTTGTATTTCATCCCTCTAGAGATGTTTTGAGACGACTCGATTTGAAATGCATAAGAAAACGAAAAACGGATAGCAAAATGACCGAAAGTGTCATAGTGGAATGGGGAAGGAAGAATAAGAAGAGCTTGAAGCTTATATTCACAACTGCATAGTAATTGCAAAATTAATGAGAATAAGAGTATATAGAATATGATGGATGAGGA</canonical>
            <polymorphic>GCCTTGAAATGGAAAATTGGAAGAAAAAAAAAGAGAAAAAAGAAGAGGAAGAAGCGGACCACCAACATGAAAAAAAGTATGTAATTAATAAAGTTGGAGGAAAAAGAGAGTTGATGGATGACGATGAAAAGGGCGGTGACTTCTAGGTGGACCTTGAAGTTAGCTTTGAAATTGGGCAATTTAGGAATCGATAGATTTTCAAGAAATTCGATTCTTCGAATTTTCAGAAGAGATTTCAACTTTTCTAGATTTCAAAATTAAACAGACATAATACAAACATAATACCGCAAACGTTTTATCAGTTAAAATTTTTGGCCTTTTTGAAAGGAGCCAAAGTGATTTTTTTAAAATTACGGTACCGCGAAGCCGCCCAACTCTTCGGAGCCCACCCCAACCGTCAACTCTAGAAGCCCAAATGAGAAACATTTTATCCGTTGACAAATATTTGATATCTTTCCTAGGAATCGAGATTGCGCTCAAAGTTTACTTCTTGGGTGGGMTTCTATTAGAGGAAATATGGTACGTTAATTTTTAGTCAAACCAGGAAAGTTCCCAAAAAATGAACGCATGAACATGAATGCACAACAAAACTCTCAATTTATTGAGGTCACAAGGTCATGAGCACTTCTTAAAAGTACAACTCAGACCATTTGGGAGAGACATAAGTAGCCGTTTCGATTCTTGATACTCGTCGAACTCTCTTTTGACCTCTTCCGATTTGTTTAGTTTTTGCAAAACTAGTTGACCAAAAAGAAAAGAAAAAAGCTGTGCTAGCCGTTTTCGGAACCAATAAAATCTTGTATTTCATCCCTCTAGAGATGTTTTGAGACGACTCGATTTGAAATGCATAAGAAAACGAAAAACGGATAGCAAAATGACCGAAAGTGTCATAGTGGAATGGGGAAGGAAGAATAAGAAGAGCTTGAAGCTTATATTCACAACTGCATAGTAATTGCAAAATTAATGAGAATAAGAGTATATAGAATATGATGGATGAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>170 163 152 147 96 89 72 36 26 18 15 9 7</canonical_bands>
                <polymorphic_bands>259 163 152 147 96 72 36 26 18 15 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGAGCCAAAGTGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTTCATGCGTTCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAGGAGCCAAAGTGATTTTTTTAAAATTACGGTACCGCGAAGCCGCCCAACTCTTCGGAGCCCACCCCAACCGTCAACTCTAGAAGCCCAAATGAGAAACATTTTATCCGTTGACAAATATTTGATATCTTTCCTAGGAATCGAGATTGCGCTCAAAGTTTACTTCTTGGGTGGGCTTCTATTAGAGGAAATATGGTACGTTAATTTTTAGTCAAACCAGGAAAGTTCCCAAAAAATGAACGCATGAACAT</canonical_amplicon>
		<polymorphic_amplicon>AAGGAGCCAAAGTGATTTTTTTAAAATTACGGTACCGCGAAGCCGCCCAACTCTTCGGAGCCCACCCCAACCGTCAACTCTAGAAGCCCAAATGAGAAACATTTTATCCGTTGACAAATATTTGATATCTTTCCTAGGAATCGAGATTGCGCTCAAAGTTTACTTCTTGGGTGGGMTTCTATTAGAGGAAATATGGTACGTTAATTTTTAGTCAAACCAGGAAAGTTCCCAAAAAATGAACGCATGAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13346</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>79343</contig_pos>
        <strand></strand>
        <context>atcgagattg[C/A]gctcaaagtt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CATTTTATCCGTTGACAAATATTTGATATCTTTCCTAGGAATCGAGATTG</left_flank>
        <right_flank>GCTCAAAGTTTACTTCTTGGGTGGGCTTCTATTAGAGGAAATATGGTACG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGAATTGATGTGCCTGGATATATTGCCTTGAAATGGAAAATTGGAAGAAAAAAAAAGAGAAAAAAGAAGAGGAAGAAGCGGACCACCAACATGAAAAAAAGTATGTAATTAATAAAGTTGGAGGAAAAAGAGAGTTGATGGATGACGATGAAAAGGGCGGTGACTTCTAGGTGGACCTTGAAGTTAGCTTTGAAATTGGGCAATTTAGGAATCGATAGATTTTCAAGAAATTCGATTCTTCGAATTTTCAGAAGAGATTTCAACTTTTCTAGATTTCAAAATTAAACAGACATAATACAAACATAATACCGCAAACGTTTTATCAGTTAAAATTTTTGGCCTTTTTGAAAGGAGCCAAAGTGATTTTTTTAAAATTACGGTACCGCGAAGCCGCCCAACTCTTCGGAGCCCACCCCAACCGTCAACTCTAGAAGCCCAAATGAGAAACATTTTATCCGTTGACAAATATTTGATATCTTTCCTAGGAATCGAGATTGCGCTCAAAGTTTACTTCTTGGGTGGGCTTCTATTAGAGGAAATATGGTACGTTAATTTTTAGTCAAACCAGGAAAGTTCCCAAAAAATGAACGCATGAACATGAATGCACAACAAAACTCTCAATTTATTGAGGTCACAAGGTCATGAGCACTTCTTAAAAGTACAACTCAGACCATTTGGGAGAGACATAAGTAGCCGTTTCGATTCTTGATACTCGTCGAACTCTCTTTTGACCTCTTCCGATTTGTTTAGTTTTTGCAAAACTAGTTGACCAAAAAGAAAAGAAAAAAGCTGTGCTAGCCGTTTTCGGAACCAATAAAATCTTGTATTTCATCCCTCTAGAGATGTTTTGAGACGACTCGATTTGAAATGCATAAGAAAACGAAAAACGGATAGCAAAATGACCGAAAGTGTCATAGTGGAATGGGGAAGGAAGAATAAGAAGAGCTTGAAGCTTATATTCACAACTGCATAGTAATTGCAAAATTAATGAGAATAAG</canonical>
            <polymorphic>ATTGAATTGATGTGCCTGGATATATTGCCTTGAAATGGAAAATTGGAAGAAAAAAAAAGAGAAAAAAGAAGAGGAAGAAGCGGACCACCAACATGAAAAAAAGTATGTAATTAATAAAGTTGGAGGAAAAAGAGAGTTGATGGATGACGATGAAAAGGGCGGTGACTTCTAGGTGGACCTTGAAGTTAGCTTTGAAATTGGGCAATTTAGGAATCGATAGATTTTCAAGAAATTCGATTCTTCGAATTTTCAGAAGAGATTTCAACTTTTCTAGATTTCAAAATTAAACAGACATAATACAAACATAATACCGCAAACGTTTTATCAGTTAAAATTTTTGGCCTTTTTGAAAGGAGCCAAAGTGATTTTTTTAAAATTACGGTACCGCGAAGCCGCCCAACTCTTCGGAGCCCACCCCAACCGTCAACTCTAGAAGCCCAAATGAGAAACATTTTATCCGTTGACAAATATTTGATATCTTTCCTAGGAATCGAGATTGMGCTCAAAGTTTACTTCTTGGGTGGGCTTCTATTAGAGGAAATATGGTACGTTAATTTTTAGTCAAACCAGGAAAGTTCCCAAAAAATGAACGCATGAACATGAATGCACAACAAAACTCTCAATTTATTGAGGTCACAAGGTCATGAGCACTTCTTAAAAGTACAACTCAGACCATTTGGGAGAGACATAAGTAGCCGTTTCGATTCTTGATACTCGTCGAACTCTCTTTTGACCTCTTCCGATTTGTTTAGTTTTTGCAAAACTAGTTGACCAAAAAGAAAAGAAAAAAGCTGTGCTAGCCGTTTTCGGAACCAATAAAATCTTGTATTTCATCCCTCTAGAGATGTTTTGAGACGACTCGATTTGAAATGCATAAGAAAACGAAAAACGGATAGCAAAATGACCGAAAGTGTCATAGTGGAATGGGGAAGGAAGAATAAGAAGAGCTTGAAGCTTATATTCACAACTGCATAGTAATTGCAAAATTAATGAGAATAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGAGCCAAAGTGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTTCATGCGTTCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAGGAGCCAAAGTGATTTTTTTAAAATTACGGTACCGCGAAGCCGCCCAACTCTTCGGAGCCCACCCCAACCGTCAACTCTAGAAGCCCAAATGAGAAACATTTTATCCGTTGACAAATATTTGATATCTTTCCTAGGAATCGAGATTGCGCTCAAAGTTTACTTCTTGGGTGGGCTTCTATTAGAGGAAATATGGTACGTTAATTTTTAGTCAAACCAGGAAAGTTCCCAAAAAATGAACGCATGAACAT</canonical_amplicon>
		<polymorphic_amplicon>AAGGAGCCAAAGTGATTTTTTTAAAATTACGGTACCGCGAAGCCGCCCAACTCTTCGGAGCCCACCCCAACCGTCAACTCTAGAAGCCCAAATGAGAAACATTTTATCCGTTGACAAATATTTGATATCTTTCCTAGGAATCGAGATTGMGCTCAAAGTTTACTTCTTGGGTGGGCTTCTATTAGAGGAAATATGGTACGTTAATTTTTAGTCAAACCAGGAAAGTTCCCAAAAAATGAACGCATGAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13347</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>79236</contig_pos>
        <strand>+</strand>
        <context>TACCGCGAAG[C/T]CGCCCAACTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTTTGAAAGGAGCCAAAGTGATTTTTTTAAAATTACGGTACCGCGAAG</left_flank>
        <right_flank>CGCCCAACTCTTCGGAGCCCACCCCAACCGTCAACTCTAGAAGCCCAAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCCGCGGCATGAAAAATGAAGAGAGTGGGTTCCGAAATTAGAAGAAGAGAGTAGGTTGAGTTAAATAGAAAGACAAAAAAGACGCAGAGAACATACAATTGACAAATTGAATTGATGTGCCTGGATATATTGCCTTGAAATGGAAAATTGGAAGAAAAAAAAAGAGAAAAAAGAAGAGGAAGAAGCGGACCACCAACATGAAAAAAAGTATGTAATTAATAAAGTTGGAGGAAAAAGAGAGTTGATGGATGACGATGAAAAGGGCGGTGACTTCTAGGTGGACCTTGAAGTTAGCTTTGAAATTGGGCAATTTAGGAATCGATAGATTTTCAAGAAATTCGATTCTTCGAATTTTCAGAAGAGATTTCAACTTTTCTAGATTTCAAAATTAAACAGACATAATACAAACATAATACCGCAAACGTTTTATCAGTTAAAATTTTTGGCCTTTTTGAAAGGAGCCAAAGTGATTTTTTTAAAATTACGGTACCGCGAAGCCGCCCAACTCTTCGGAGCCCACCCCAACCGTCAACTCTAGAAGCCCAAATGAGAAACATTTTATCCGTTGACAAATATTTGATATCTTTCCTAGGAATCGAGATTGCGCTCAAAGTTTACTTCTTGGGTGGGCTTCTATTAGAGGAAATATGGTACGTTAATTTTTAGTCAAACCAGGAAAGTTCCCAAAAAATGAACGCATGAACATGAATGCACAACAAAACTCTCAATTTATTGAGGTCACAAGGTCATGAGCACTTCTTAAAAGTACAACTCAGACCATTTGGGAGAGACATAAGTAGCCGTTTCGATTCTTGATACTCGTCGAACTCTCTTTTGACCTCTTCCGATTTGTTTAGTTTTTGCAAAACTAGTTGACCAAAAAGAAAAGAAAAAAGCTGTGCTAGCCGTTTTCGGAACCAATAAAATCTTGTATTTCATCCCTCTAGAGATGTTTTGAGACGACTCGATTTGAAATGCATAAGAAAACGAAAAACGGA</canonical>
            <polymorphic>AAGCCGCGGCATGAAAAATGAAGAGAGTGGGTTCCGAAATTAGAAGAAGAGAGTAGGTTGAGTTAAATAGAAAGACAAAAAAGACGCAGAGAACATACAATTGACAAATTGAATTGATGTGCCTGGATATATTGCCTTGAAATGGAAAATTGGAAGAAAAAAAAAGAGAAAAAAGAAGAGGAAGAAGCGGACCACCAACATGAAAAAAAGTATGTAATTAATAAAGTTGGAGGAAAAAGAGAGTTGATGGATGACGATGAAAAGGGCGGTGACTTCTAGGTGGACCTTGAAGTTAGCTTTGAAATTGGGCAATTTAGGAATCGATAGATTTTCAAGAAATTCGATTCTTCGAATTTTCAGAAGAGATTTCAACTTTTCTAGATTTCAAAATTAAACAGACATAATACAAACATAATACCGCAAACGTTTTATCAGTTAAAATTTTTGGCCTTTTTGAAAGGAGCCAAAGTGATTTTTTTAAAATTACGGTACCGCGAAGYCGCCCAACTCTTCGGAGCCCACCCCAACCGTCAACTCTAGAAGCCCAAATGAGAAACATTTTATCCGTTGACAAATATTTGATATCTTTCCTAGGAATCGAGATTGCGCTCAAAGTTTACTTCTTGGGTGGGCTTCTATTAGAGGAAATATGGTACGTTAATTTTTAGTCAAACCAGGAAAGTTCCCAAAAAATGAACGCATGAACATGAATGCACAACAAAACTCTCAATTTATTGAGGTCACAAGGTCATGAGCACTTCTTAAAAGTACAACTCAGACCATTTGGGAGAGACATAAGTAGCCGTTTCGATTCTTGATACTCGTCGAACTCTCTTTTGACCTCTTCCGATTTGTTTAGTTTTTGCAAAACTAGTTGACCAAAAAGAAAAGAAAAAAGCTGTGCTAGCCGTTTTCGGAACCAATAAAATCTTGTATTTCATCCCTCTAGAGATGTTTTGAGACGACTCGATTTGAAATGCATAAGAAAACGAAAAACGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>500 261 153 74 8 4</canonical_bands>
                <polymorphic_bands>508 261 153 74 4</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>498 496 6</canonical_bands>
                <polymorphic_bands>994 6</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>293 170 152 96 93 89 36 26 18 15 9 3</canonical_bands>
                <polymorphic_bands>293 170 152 96 93 89 54 26 15 9 3</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>498 496 6</canonical_bands>
                <polymorphic_bands>994 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGGAATCGATAGATTTTCAAGA</pcr_primer_p1>
		<pcr_primer_p2>CTCATTTGGGCTTCTAGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TAGGAATCGATAGATTTTCAAGAAATTCGATTCTTCGAATTTTCAGAAGAGATTTCAACTTTTCTAGATTTCAAAATTAAACAGACATAATACAAACATAATACCGCAAACGTTTTATCAGTTAAAATTTTTGGCCTTTTTGAAAGGAGCCAAAGTGATTTTTTTAAAATTACGGTACCGCGAAGCCGCCCAACTCTTCGGAGCCCACCCCAACCGTCAACTCTAGAAGCCCAAATGAG</canonical_amplicon>
		<polymorphic_amplicon>TAGGAATCGATAGATTTTCAAGAAATTCGATTCTTCGAATTTTCAGAAGAGATTTCAACTTTTCTAGATTTCAAAATTAAACAGACATAATACAAACATAATACCGCAAACGTTTTATCAGTTAAAATTTTTGGCCTTTTTGAAAGGAGCCAAAGTGATTTTTTTAAAATTACGGTACCGCGAAGYCGCCCAACTCTTCGGAGCCCACCCCAACCGTCAACTCTAGAAGCCCAAATGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13348</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>79164</contig_pos>
        <strand>+</strand>
        <context>CCGCAAACGT[G/T]TTATCAGTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTAGATTTCAAAATTAAACAGACATAATACAAACATAATACCGCAAACGT</left_flank>
        <right_flank>TTATCAGTTAAAATTTTTGGCCTTTTTGAAAGGAGCCAAAGTGATTTTTT</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTGCGTACGGATGTGATCCACCAAAAAGACGGAAAAAAAAGGAAAGGGGAGGTCGATTCCGAAGAAGAAGAAGCCGCGGCATGAAAAATGAAGAGAGTGGGTTCCGAAATTAGAAGAAGAGAGTAGGTTGAGTTAAATAGAAAGACAAAAAAGACGCAGAGAACATACAATTGACAAATTGAATTGATGTGCCTGGATATATTGCCTTGAAATGGAAAATTGGAAGAAAAAAAAAGAGAAAAAAGAAGAGGAAGAAGCGGACCACCAACATGAAAAAAAGTATGTAATTAATAAAGTTGGAGGAAAAAGAGAGTTGATGGATGACGATGAAAAGGGCGGTGACTTCTAGGTGGACCTTGAAGTTAGCTTTGAAATTGGGCAATTTAGGAATCGATAGATTTTCAAGAAATTCGATTCTTCGAATTTTCAGAAGAGATTTCAACTTTTCTAGATTTCAAAATTAAACAGACATAATACAAACATAATACCGCAAACGTTTTATCAGTTAAAATTTTTGGCCTTTTTGAAAGGAGCCAAAGTGATTTTTTTAAAATTACGGTACCGCGAAGCCGCCCAACTCTTCGGAGCCCACCCCAACCGTCAACTCTAGAAGCCCAAATGAGAAACATTTTATCCGTTGACAAATATTTGATATCTTTCCTAGGAATCGAGATTGCGCTCAAAGTTTACTTCTTGGGTGGGCTTCTATTAGAGGAAATATGGTACGTTAATTTTTAGTCAAACCAGGAAAGTTCCCAAAAAATGAACGCATGAACATGAATGCACAACAAAACTCTCAATTTATTGAGGTCACAAGGTCATGAGCACTTCTTAAAAGTACAACTCAGACCATTTGGGAGAGACATAAGTAGCCGTTTCGATTCTTGATACTCGTCGAACTCTCTTTTGACCTCTTCCGATTTGTTTAGTTTTTGCAAAACTAGTTGACCAAAAAGAAAAGAAAAAAGCTGTGCTAGCCGTTTTCGGAACCAATAAAA</canonical>
            <polymorphic>CATTGCGTACGGATGTGATCCACCAAAAAGACGGAAAAAAAAGGAAAGGGGAGGTCGATTCCGAAGAAGAAGAAGCCGCGGCATGAAAAATGAAGAGAGTGGGTTCCGAAATTAGAAGAAGAGAGTAGGTTGAGTTAAATAGAAAGACAAAAAAGACGCAGAGAACATACAATTGACAAATTGAATTGATGTGCCTGGATATATTGCCTTGAAATGGAAAATTGGAAGAAAAAAAAAGAGAAAAAAGAAGAGGAAGAAGCGGACCACCAACATGAAAAAAAGTATGTAATTAATAAAGTTGGAGGAAAAAGAGAGTTGATGGATGACGATGAAAAGGGCGGTGACTTCTAGGTGGACCTTGAAGTTAGCTTTGAAATTGGGCAATTTAGGAATCGATAGATTTTCAAGAAATTCGATTCTTCGAATTTTCAGAAGAGATTTCAACTTTTCTAGATTTCAAAATTAAACAGACATAATACAAACATAATACCGCAAACGTKTTATCAGTTAAAATTTTTGGCCTTTTTGAAAGGAGCCAAAGTGATTTTTTTAAAATTACGGTACCGCGAAGCCGCCCAACTCTTCGGAGCCCACCCCAACCGTCAACTCTAGAAGCCCAAATGAGAAACATTTTATCCGTTGACAAATATTTGATATCTTTCCTAGGAATCGAGATTGCGCTCAAAGTTTACTTCTTGGGTGGGCTTCTATTAGAGGAAATATGGTACGTTAATTTTTAGTCAAACCAGGAAAGTTCCCAAAAAATGAACGCATGAACATGAATGCACAACAAAACTCTCAATTTATTGAGGTCACAAGGTCATGAGCACTTCTTAAAAGTACAACTCAGACCATTTGGGAGAGACATAAGTAGCCGTTTCGATTCTTGATACTCGTCGAACTCTCTTTTGACCTCTTCCGATTTGTTTAGTTTTTGCAAAACTAGTTGACCAAAAAGAAAAGAAAAAAGCTGTGCTAGCCGTTTTCGGAACCAATAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGGAATCGATAGATTTTCAAGA</pcr_primer_p1>
		<pcr_primer_p2>CTCATTTGGGCTTCTAGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TAGGAATCGATAGATTTTCAAGAAATTCGATTCTTCGAATTTTCAGAAGAGATTTCAACTTTTCTAGATTTCAAAATTAAACAGACATAATACAAACATAATACCGCAAACGTTTTATCAGTTAAAATTTTTGGCCTTTTTGAAAGGAGCCAAAGTGATTTTTTTAAAATTACGGTACCGCGAAGCCGCCCAACTCTTCGGAGCCCACCCCAACCGTCAACTCTAGAAGCCCAAATGAG</canonical_amplicon>
		<polymorphic_amplicon>TAGGAATCGATAGATTTTCAAGAAATTCGATTCTTCGAATTTTCAGAAGAGATTTCAACTTTTCTAGATTTCAAAATTAAACAGACATAATACAAACATAATACCGCAAACGTKTTATCAGTTAAAATTTTTGGCCTTTTTGAAAGGAGCCAAAGTGATTTTTTTAAAATTACGGTACCGCGAAGCCGCCCAACTCTTCGGAGCCCACCCCAACCGTCAACTCTAGAAGCCCAAATGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13349</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>92405</contig_pos>
        <strand>+</strand>
        <context>AAATTAATAG[A/G]TCTAAGAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGATATTTATTTGTTCATAACGCGTTTAGTTGTAATTATTAAATTAATAG</left_flank>
        <right_flank>TCTAAGAATCCATCAACGATTCGAATAAATATGGTATTTTTCTACCAAAA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATAGCCGAAGAACGAGAAGAGAAGAAGCAAAAAGGCGAATTGGATACAAGCCTTGTAGGTCCAGTATCTGTTCCATATCTAGAGAGGTAAATCATAGGTTAAGAGGTTGCTTTTAAAAAAACGTTTCAGTGAACACATCCTTTCTGCATTGACCAAGTTGTCTGCGCTGTATCGCAAACAAGGAGAGTTTGAAGCTGCTGACTACTTGGAGAATGTTGCAGTACGAACAAAAACGCCGGAAGAAGGATCGAGAGTCGATAGCCATTTCTTAACGACGTCGTCCAACGAAGATTCTCGTGTACGAGTGGCTAACACTGGAATCAGATCCAAGCTCTTGAGTGCTCTGGGCTTCAACATTTAGTTTAATTTTTCAAATTGAGCCTTTCTTCCAAGGCTTCCTATTGTATGCTTCCTATATAGTGTTCCCTCATATTATCTGTATTACTCGATATTTATTTGTTCATAACGCGTTTAGTTGTAATTATTAAATTAATAGATCTAAGAATCCATCAACGATTCGAATAAATATGGTATTTTTCTACCAAAAATGTTGCATAGATTTTTTGTGGTTTTTGTACCGTAAACAATTTTTCGCACACATTTTCCTCTTTCTGACTGTCAATCCACATCGTTTTTTTTTCTTGCTAAAGCTGTGTTTGTGTTCCTGCAGCGCGTGGGAAGCGAATTCAATTTAGGTGAAAATGTAAAATTCCACGAGACGTTCTCTTCTCTCACTCTGTGTCTCTTGCTTCATACTCTTTCATCCCCTTCTCCACATTTTCGTTCTGATCTCGATCTCGGGCGCCAGCGCCAACAAGAGCGCACTTTTTTGTCTGTTTTGTAGGCCACCGCATGCCTTCTTGCATCACCGTCTCTGTTTCGCATACTTTCTATCCTTCCCAACCCCCCCCCCCCCCCCGCCCATCCTTTTTCTTTTCCGTTTTTTCTTGCGCAATGTATGCGTGACTTTTCCTTGGAGGGTTCTAGGATAAAACCA</canonical>
            <polymorphic>AAAATAGCCGAAGAACGAGAAGAGAAGAAGCAAAAAGGCGAATTGGATACAAGCCTTGTAGGTCCAGTATCTGTTCCATATCTAGAGAGGTAAATCATAGGTTAAGAGGTTGCTTTTAAAAAAACGTTTCAGTGAACACATCCTTTCTGCATTGACCAAGTTGTCTGCGCTGTATCGCAAACAAGGAGAGTTTGAAGCTGCTGACTACTTGGAGAATGTTGCAGTACGAACAAAAACGCCGGAAGAAGGATCGAGAGTCGATAGCCATTTCTTAACGACGTCGTCCAACGAAGATTCTCGTGTACGAGTGGCTAACACTGGAATCAGATCCAAGCTCTTGAGTGCTCTGGGCTTCAACATTTAGTTTAATTTTTCAAATTGAGCCTTTCTTCCAAGGCTTCCTATTGTATGCTTCCTATATAGTGTTCCCTCATATTATCTGTATTACTCGATATTTATTTGTTCATAACGCGTTTAGTTGTAATTATTAAATTAATAGRTCTAAGAATCCATCAACGATTCGAATAAATATGGTATTTTTCTACCAAAAATGTTGCATAGATTTTTTGTGGTTTTTGTACCGTAAACAATTTTTCGCACACATTTTCCTCTTTCTGACTGTCAATCCACATCGTTTTTTTTTCTTGCTAAAGCTGTGTTTGTGTTCCTGCAGCGCGTGGGAAGCGAATTCAATTTAGGTGAAAATGTAAAATTCCACGAGACGTTCTCTTCTCTCACTCTGTGTCTCTTGCTTCATACTCTTTCATCCCCTTCTCCACATTTTCGTTCTGATCTCGATCTCGGGCGCCAGCGCCAACAAGAGCGCACTTTTTTGTCTGTTTTGTAGGCCACCGCATGCCTTCTTGCATCACCGTCTCTGTTTCGCATACTTTCTATCCTTCCCAACCCCCCCCCCCCCCCCGCCCATCCTTTTTCTTTTCCGTTTTTTCTTGCGCAATGTATGCGTGACTTTTCCTTGGAGGGTTCTAGGATAAAACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>292 248 204 172 78 6</canonical_bands>
                <polymorphic_bands>464 248 204 78 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>502 326 172</canonical_bands>
                <polymorphic_bands>674 326</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCAAATTGAGCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>TCAGAAAGAGGAAAATGTGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCAAATTGAGCCTTTCTTCCAAGGCTTCCTATTGTATGCTTCCTATATAGTGTTCCCTCATATTATCTGTATTACTCGATATTTATTTGTTCATAACGCGTTTAGTTGTAATTATTAAATTAATAGATCTAAGAATCCATCAACGATTCGAATAAATATGGTATTTTTCTACCAAAAATGTTGCATAGATTTTTTGTGGTTTTTGTACCGTAAACAATTTTTCGCACACATTTTCCTCTTTCTGA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCAAATTGAGCCTTTCTTCCAAGGCTTCCTATTGTATGCTTCCTATATAGTGTTCCCTCATATTATCTGTATTACTCGATATTTATTTGTTCATAACGCGTTTAGTTGTAATTATTAAATTAATAGRTCTAAGAATCCATCAACGATTCGAATAAATATGGTATTTTTCTACCAAAAATGTTGCATAGATTTTTTGTGGTTTTTGTACCGTAAACAATTTTTCGCACACATTTTCCTCTTTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13350</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>99337</contig_pos>
        <strand>+</strand>
        <context>CTTGGTATTT[A/G]TTGGTGGAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCACAAGCAAGTAGTGATCTCCATTGTCATGGACAGAAACTTGGTATTT</left_flank>
        <right_flank>TTGGTGGAGTTGAATGGAATCTCAGCAATCTTTGGATTCTTCTCACGAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTCAACCTCCTCAACTGGGATGTTACGACGAATGGCAATATCCTCAACGGTCTCGGTTCCCTCGGAGATGATTCCGACGGACTTGGCAATGGCCTTGGCGGTAATTGGGTGATCTCCAGTGACCATGACGACTTTGATTCCAGCGGAGCGGCACTTGGCCACAGCATCTGGGACAGCAGCACGTGGTGGATCAATCATGGACATAAGTCCAACGAATCTCAAGTTCTTCAATGGGAAGTTGACCTCCTCAACGTCGAATTTGAATCCTTTCGGGAACTTGTCGGCTGGCAGAATGAAATCACAGAATCCGAGGACACGTTCTCCCATTCCTCCCAACTCGAGGTAAGCAGTGTTGAAGTCGTCACGAAGTTTGTCGGTAAGCTCAACTTCCTTTCCGTTCAAGAAGATAGTGGAGCAAACGTCCAAGATTCTTTCTGGGGCTCCCTTCATCACAAGCAAGTAGTGATCTCCATTGTCATGGACAGAAACTTGGTATTTATTGGTGGAGTTGAATGGAATCTCAGCAATCTTTGGATTCTTCTCACGAACAGCAATAACATTTCCTTGAGTGAGCTCGGTGAACTTGAGAAGAGCGATCTCAGAAGCATCTCCAGTGCAATCACGACGAAGGACTGGGGTGTCTTGTTGTCCTGCCTTGAACTCAGCACGGTTACAGAGGGAAGCGATGCGGACGAGGGCCTGAAATTTTAATTTTGTTGCAACAGCCTGATGAAAAAATCTTGTCGATTCACTGACCTCAAAGCTAGCTCCGGTTCTCTTTTCTTGGCTGGTCTGGGTCTCGGTGGTATCGCACTCATGAATAGTCTGATCGTACCACATATGGGCAACGGTCATTCTGTTTTGAGTGAGAGTTCCGGTTTTATCGGAACAGATGGTGGAAGTGGATCCAAGAGTTTCGACGGCTTCGAGGTTCTTAACAAGACAGTTCTTGCTGGCCATTCTCTTGGCGGTAAGAGTGAGGCACACGGTGACGGTAGC</canonical>
            <polymorphic>GGTCAACCTCCTCAACTGGGATGTTACGACGAATGGCAATATCCTCAACGGTCTCGGTTCCCTCGGAGATGATTCCGACGGACTTGGCAATGGCCTTGGCGGTAATTGGGTGATCTCCAGTGACCATGACGACTTTGATTCCAGCGGAGCGGCACTTGGCCACAGCATCTGGGACAGCAGCACGTGGTGGATCAATCATGGACATAAGTCCAACGAATCTCAAGTTCTTCAATGGGAAGTTGACCTCCTCAACGTCGAATTTGAATCCTTTCGGGAACTTGTCGGCTGGCAGAATGAAATCACAGAATCCGAGGACACGTTCTCCCATTCCTCCCAACTCGAGGTAAGCAGTGTTGAAGTCGTCACGAAGTTTGTCGGTAAGCTCAACTTCCTTTCCGTTCAAGAAGATAGTGGAGCAAACGTCCAAGATTCTTTCTGGGGCTCCCTTCATCACAAGCAAGTAGTGATCTCCATTGTCATGGACAGAAACTTGGTATTTRTTGGTGGAGTTGAATGGAATCTCAGCAATCTTTGGATTCTTCTCACGAACAGCAATAACATTTCCTTGAGTGAGCTCGGTGAACTTGAGAAGAGCGATCTCAGAAGCATCTCCAGTGCAATCACGACGAAGGACTGGGGTGTCTTGTTGTCCTGCCTTGAACTCAGCACGGTTACAGAGGGAAGCGATGCGGACGAGGGCCTGAAATTTTAATTTTGTTGCAACAGCCTGATGAAAAAATCTTGTCGATTCACTGACCTCAAAGCTAGCTCCGGTTCTCTTTTCTTGGCTGGTCTGGGTCTCGGTGGTATCGCACTCATGAATAGTCTGATCGTACCACATATGGGCAACGGTCATTCTGTTTTGAGTGAGAGTTCCGGTTTTATCGGAACAGATGGTGGAAGTGGATCCAAGAGTTTCGACGGCTTCGAGGTTCTTAACAAGACAGTTCTTGCTGGCCATTCTCTTGGCGGTAAGAGTGAGGCACACGGTGACGGTAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACTCGAGGTAAGCAGTGT</pcr_primer_p1>
		<pcr_primer_p2>AGCTCACTCAAGGAAATGTTATT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CAACTCGAGGTAAGCAGTGTTGAAGTCGTCACGAAGTTTGTCGGTAAGCTCAACTTCCTTTCCGTTCAAGAAGATAGTGGAGCAAACGTCCAAGATTCTTTCTGGGGCTCCCTTCATCACAAGCAAGTAGTGATCTCCATTGTCATGGACAGAAACTTGGTATTTATTGGTGGAGTTGAATGGAATCTCAGCAATCTTTGGATTCTTCTCACGAACAGCAATAACATTTCCTTGAGTGAGCT</canonical_amplicon>
		<polymorphic_amplicon>CAACTCGAGGTAAGCAGTGTTGAAGTCGTCACGAAGTTTGTCGGTAAGCTCAACTTCCTTTCCGTTCAAGAAGATAGTGGAGCAAACGTCCAAGATTCTTTCTGGGGCTCCCTTCATCACAAGCAAGTAGTGATCTCCATTGTCATGGACAGAAACTTGGTATTTRTTGGTGGAGTTGAATGGAATCTCAGCAATCTTTGGATTCTTCTCACGAACAGCAATAACATTTCCTTGAGTGAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13351</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>99564</contig_pos>
        <strand>+</strand>
        <context>GTTGCAACAG[A/C]CTGATGAARA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAGGGAAGCGATGCGGACGAGGGCCTGAAATTTTAATTTTGTTGCAACAG</left_flank>
        <right_flank>CTGATGAAAAAATCTTGTCGATTCACTGACCTCAAAGCTAGCTCCGGTTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAATGGGAAGTTGACCTCCTCAACGTCGAATTTGAATCCTTTCGGGAACTTGTCGGCTGGCAGAATGAAATCACAGAATCCGAGGACACGTTCTCCCATTCCTCCCAACTCGAGGTAAGCAGTGTTGAAGTCGTCACGAAGTTTGTCGGTAAGCTCAACTTCCTTTCCGTTCAAGAAGATAGTGGAGCAAACGTCCAAGATTCTTTCTGGGGCTCCCTTCATCACAAGCAAGTAGTGATCTCCATTGTCATGGACAGAAACTTGGTATTTATTGGTGGAGTTGAATGGAATCTCAGCAATCTTTGGATTCTTCTCACGAACAGCAATAACATTTCCTTGAGTGAGCTCGGTGAACTTGAGAAGAGCGATCTCAGAAGCATCTCCAGTGCAATCACGACGAAGGACTGGGGTGTCTTGTTGTCCTGCCTTGAACTCAGCACGGTTACAGAGGGAAGCGATGCGGACGAGGGCCTGAAATTTTAATTTTGTTGCAACAGCCTGATGAAAAAATCTTGTCGATTCACTGACCTCAAAGCTAGCTCCGGTTCTCTTTTCTTGGCTGGTCTGGGTCTCGGTGGTATCGCACTCATGAATAGTCTGATCGTACCACATATGGGCAACGGTCATTCTGTTTTGAGTGAGAGTTCCGGTTTTATCGGAACAGATGGTGGAAGTGGATCCAAGAGTTTCGACGGCTTCGAGGTTCTTAACAAGACAGTTCTTGCTGGCCATTCTCTTGGCGGTAAGAGTGAGGCACACGGTGACGGTAGCGATCAATCCTTCTGGAACATTGGCGACAATGATACCGATAAGGAAAACGACAGCAGTGAGCCAATGGTATCCAAGGATGAAGGCAATGATGAAGAAAGAAATTCCAAGGAAAACGGCGACACCAGTGATAAGATGGATGAAATGCTCGATTTCGCGAGCAATTGGGGTCATTCCGGTGTCGAGTCCAGAAGCCAAATGGGCAATTCTTCCCATGACGGTGTTGTCTC</canonical>
            <polymorphic>TTCAATGGGAAGTTGACCTCCTCAACGTCGAATTTGAATCCTTTCGGGAACTTGTCGGCTGGCAGAATGAAATCACAGAATCCGAGGACACGTTCTCCCATTCCTCCCAACTCGAGGTAAGCAGTGTTGAAGTCGTCACGAAGTTTGTCGGTAAGCTCAACTTCCTTTCCGTTCAAGAAGATAGTGGAGCAAACGTCCAAGATTCTTTCTGGGGCTCCCTTCATCACAAGCAAGTAGTGATCTCCATTGTCATGGACAGAAACTTGGTATTTATTGGTGGAGTTGAATGGAATCTCAGCAATCTTTGGATTCTTCTCACGAACAGCAATAACATTTCCTTGAGTGAGCTCGGTGAACTTGAGAAGAGCGATCTCAGAAGCATCTCCAGTGCAATCACGACGAAGGACTGGGGTGTCTTGTTGTCCTGCCTTGAACTCAGCACGGTTACAGAGGGAAGCGATGCGGACGAGGGCCTGAAATTTTAATTTTGTTGCAACAGMCTGATGAAAAAATCTTGTCGATTCACTGACCTCAAAGCTAGCTCCGGTTCTCTTTTCTTGGCTGGTCTGGGTCTCGGTGGTATCGCACTCATGAATAGTCTGATCGTACCACATATGGGCAACGGTCATTCTGTTTTGAGTGAGAGTTCCGGTTTTATCGGAACAGATGGTGGAAGTGGATCCAAGAGTTTCGACGGCTTCGAGGTTCTTAACAAGACAGTTCTTGCTGGCCATTCTCTTGGCGGTAAGAGTGAGGCACACGGTGACGGTAGCGATCAATCCTTCTGGAACATTGGCGACAATGATACCGATAAGGAAAACGACAGCAGTGAGCCAATGGTATCCAAGGATGAAGGCAATGATGAAGAAAGAAATTCCAAGGAAAACGGCGACACCAGTGATAAGATGGATGAAATGCTCGATTTCGCGAGCAATTGGGGTCATTCCGGTGTCGAGTCCAGAAGCCAAATGGGCAATTCTTCCCATGACGGTGTTGTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>136 133 131 125 103 97 59 58 38 36 33 27 20 4</canonical_bands>
                <polymorphic_bands>136 133 131 125 103 97 65 59 58 36 33 20 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCTCAGAAGCATCTCCAGT</pcr_primer_p1>
		<pcr_primer_p2>CATATGTGGTACGATCAGACTATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATCTCAGAAGCATCTCCAGTGCAATCACGACGAAGGACTGGGGTGTCTTGTTGTCCTGCCTTGAACTCAGCACGGTTACAGAGGGAAGCGATGCGGACGAGGGCCTGAAATTTTAATTTTGTTGCAACAGCCTGATGAAAAAATCTTGTCGATTCACTGACCTCAAAGCTAGCTCCGGTTCTCTTTTCTTGGCTGGTCTGGGTCTCGGTGGTATCGCACTCATGAATAGTCTGATCGTACCACATATG</canonical_amplicon>
		<polymorphic_amplicon>GATCTCAGAAGCATCTCCAGTGCAATCACGACGAAGGACTGGGGTGTCTTGTTGTCCTGCCTTGAACTCAGCACGGTTACAGAGGGAAGCGATGCGGACGAGGGCCTGAAATTTTAATTTTGTTGCAACAGMCTGATGAAAAAATCTTGTCGATTCACTGACCTCAAAGCTAGCTCCGGTTCTCTTTTCTTGGCTGGTCTGGGTCTCGGTGGTATCGCACTCATGAATAGTCTGATCGTACCACATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13353</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>116400</contig_pos>
        <strand>+</strand>
        <context>CAAGATATCT[C/T]TCACGATTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTAGATATGAAATGTATTTGCGGTTATAAATTGATTCCTCCAAGATATCT</left_flank>
        <right_flank>TCACGATTGATGCTGTCAGAATTTGGAGAGAAACATACTCTGGAAGGCAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGATTTGGTTCGAGGAAAGACGTATATCGAAGTTGGAGAGCTCTGTTCGATTTATTTGAAGTACGAGTTTTAATTTTTTTTTTCCCCCTTCCAATAAGTTTTTTTCAGCGCAACGAAAGAATTGGTAGAAAGGAACAAAAGAATAAGATGTGATAACGTTATTCTGTCACCCACAGATGCTGAAAACATCAATATCATTGAGAAGGTAAACCAAACCAACTACGGACATGTTGTGGTTGTGGGAAATGATACTTCAAAGGCTTTGGAAGCTCTAATGGTATCCACGGAACTTAGTCGACATATGTTGTACACAAATCAAGGAATCAAGACGAAAGAAGAATGGGGAGATTTGATGAATCGAGTATTAAGAGATTCTCTAATCGATGGAAAAGAAACCGTTCTTGGATTGACTGTATCTCCAGATGAGGAAATTGCTGAAACTATTTTAGTAGATATGAAATGTATTTGCGGTTATAAATTGATTCCTCCAAGATATCTCTCACGATTGATGCTGTCAGAATTTGGAGAGAAACATACTCTGGAAGGCAAAGGAATATGGGAGATGCTGGAGACGAAACTGTCCGCTTTAAAAGTGTCTCTAATACTGAAATCTTCTGATTTTTCTTGGTTTATGAATTGCCATCGAATGCTTTTATCCATGATGATTCTAGTCTGGTGGGGAGATCCTTCTAGAAAAGAGCAGGAACAGGAGATTCTCGACGAGCTACATAATTCTGGGCTGTTTTCAAAACAACAAACAGAGCAGCTAATGAAAGTCATAGATGAGTTGATTTCGATGAAGATATTGAATACCAGAGCTGAAAAATTAAAAATGATCTCAACAATTACAAAGTTAGCGAAGAAAAAGAAAGAAGAAGTTAGGAAAACCATGACAAAATATGAAAAAGGAATGGAAAAAATGAAGAGAGCCGAAGAGCAAGTGGCTGGAATGCAGGGTGAATTGTTGAGATTGCAACCACAGTTGGTGAGGACTTCAAT</canonical>
            <polymorphic>ACGATTTGGTTCGAGGAAAGACGTATATCGAAGTTGGAGAGCTCTGTTCGATTTATTTGAAGTACGAGTTTTAATTTTTTTTTTCCCCCTTCCAATAAGTTTTTTTCAGCGCAACGAAAGAATTGGTAGAAAGGAACAAAAGAATAAGATGTGATAACGTTATTCTGTCACCCACAGATGCTGAAAACATCAATATCATTGAGAAGGTAAACCAAACCAACTACGGACATGTTGTGGTTGTGGGAAATGATACTTCAAAGGCTTTGGAAGCTCTAATGGTATCCACGGAACTTAGTCGACATATGTTGTACACAAATCAAGGAATCAAGACGAAAGAAGAATGGGGAGATTTGATGAATCGAGTATTAAGAGATTCTCTAATCGATGGAAAAGAAACCGTTCTTGGATTGACTGTATCTCCAGATGAGGAAATTGCTGAAACTATTTTAGTAGATATGAAATGTATTTGCGGTTATAAATTGATTCCTCCAAGATATCTYTCACGATTGATGCTGTCAGAATTTGGAGAGAAACATACTCTGGAAGGCAAAGGAATATGGGAGATGCTGGAGACGAAACTGTCCGCTTTAAAAGTGTCTCTAATACTGAAATCTTCTGATTTTTCTTGGTTTATGAATTGCCATCGAATGCTTTTATCCATGATGATTCTAGTCTGGTGGGGAGATCCTTCTAGAAAAGAGCAGGAACAGGAGATTCTCGACGAGCTACATAATTCTGGGCTGTTTTCAAAACAACAAACAGAGCAGCTAATGAAAGTCATAGATGAGTTGATTTCGATGAAGATATTGAATACCAGAGCTGAAAAATTAAAAATGATCTCAACAATTACAAAGTTAGCGAAGAAAAAGAAAGAAGAAGTTAGGAAAACCATGACAAAATATGAAAAAGGAATGGAAAAAATGAAGAGAGCCGAAGAGCAAGTGGCTGGAATGCAGGGTGAATTGTTGAGATTGCAACCACAGTTGGTGAGGACTTCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTGGATTGACTGTATCTCC</pcr_primer_p1>
		<pcr_primer_p2>AATTCATAAACCAAGAAAAATCA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TTCTTGGATTGACTGTATCTCCAGATGAGGAAATTGCTGAAACTATTTTAGTAGATATGAAATGTATTTGCGGTTATAAATTGATTCCTCCAAGATATCTCTCACGATTGATGCTGTCAGAATTTGGAGAGAAACATACTCTGGAAGGCAAAGGAATATGGGAGATGCTGGAGACGAAACTGTCCGCTTTAAAAGTGTCTCTAATACTGAAATCTTCTGATTTTTCTTGGTTTATGAATT</canonical_amplicon>
		<polymorphic_amplicon>TTCTTGGATTGACTGTATCTCCAGATGAGGAAATTGCTGAAACTATTTTAGTAGATATGAAATGTATTTGCGGTTATAAATTGATTCCTCCAAGATATCTYTCACGATTGATGCTGTCAGAATTTGGAGAGAAACATACTCTGGAAGGCAAAGGAATATGGGAGATGCTGGAGACGAAACTGTCCGCTTTAAAAGTGTCTCTAATACTGAAATCTTCTGATTTTTCTTGGTTTATGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13354</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>118381</contig_pos>
        <strand>+</strand>
        <context>AGTTAACAAA[A/G]ACTTCAGAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTGTTTCAGGTTATCAAAATTGGAAACCATCAGCATGAAGTTAACAAA</left_flank>
        <right_flank>ACTTCAGAGTGTTCTTTAGAACAAGAGGAGCCAATAATCTCAATTTGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATTCTGTTGGATCTGCTCTAGCGTTGCATATTTTTGGGAAGTTGCCAATTGATCAGAGAGAAGTGATTTCCTGATTTGAAATTTGACAAAAAATTGTCTAATTATTCCAGAAAGAGCTTCGAAAGACCATGAGAAGCTTGTTCCCAAAATTGGAAATAACAATCGCTTGTGACTTGAAAACCTTGGTTATGCTGGTTGATGATCCAATCTGTTTCATTAACGATGATAGCCGAGCTTTGGAATTCTTAGAATCAAAATTCGAAAAAGTAGTTGTCTCGAATCAATGGTCAGAAGCTGAACGCCAGCAGTGTCTAGCTTCGAATTCAGTTTTGCTTTTTGAAATTAATCAAGAAAATTTGAAAGCGGCGGAAGAAATCGATAATGCAGAATATTACAGTCAGATGGAGGAAGAAATCGTGGGTTGATTAGCAATGATTTCAATAGATTCTTTGTTTCAGGTTATCAAAATTGGAAACCATCAGCATGAAGTTAACAAAAACTTCAGAGTGTTCTTTAGAACAAGAGGAGCCAATAATCTCAATTTGAAAAAGTCTGTCATAATTGACAATCAGTTTAGTGACGGAGAGTTGAGGCATGATATCTGTGAAATGATGGGATCAGCAAATTGGGCCGAAACATTGAACCATTATAACGAAATGGTTGAATCCAGAAATAACGATATCGCAATGATGGAGAGTAAGTGATTTTGTTACGTGGATTCCATTTGAATATTTTCAGAAACTGAAAACGAAATGTTGGATTTGTTGGGGAGATCAAAAGACTTGGATGATGAGAGAGCAATCGATTTATTAGCAGAAGCTAGAAATCTGCAATCGTCGATTGTAGCGAGGAACAAGGAAATCGCAGAGGTATCTATATGGGAATAGGCTTTGTTCTGTACTATTCTATTCCAGATTGAAACATCTTTGCGTTCAATTGAAAGTAAAATGTCTCAATGCATCGATTATTCTATGAAAGTTATTAAAATGAGCTACACG</canonical>
            <polymorphic>GTATTCTGTTGGATCTGCTCTAGCGTTGCATATTTTTGGGAAGTTGCCAATTGATCAGAGAGAAGTGATTTCCTGATTTGAAATTTGACAAAAAATTGTCTAATTATTCCAGAAAGAGCTTCGAAAGACCATGAGAAGCTTGTTCCCAAAATTGGAAATAACAATCGCTTGTGACTTGAAAACCTTGGTTATGCTGGTTGATGATCCAATCTGTTTCATTAACGATGATAGCCGAGCTTTGGAATTCTTAGAATCAAAATTCGAAAAAGTAGTTGTCTCGAATCAATGGTCAGAAGCTGAACGCCAGCAGTGTCTAGCTTCGAATTCAGTTTTGCTTTTTGAAATTAATCAAGAAAATTTGAAAGCGGCGGAAGAAATCGATAATGCAGAATATTACAGTCAGATGGAGGAAGAAATCGTGGGTTGATTAGCAATGATTTCAATAGATTCTTTGTTTCAGGTTATCAAAATTGGAAACCATCAGCATGAAGTTAACAAARACTTCAGAGTGTTCTTTAGAACAAGAGGAGCCAATAATCTCAATTTGAAAAAGTCTGTCATAATTGACAATCAGTTTAGTGACGGAGAGTTGAGGCATGATATCTGTGAAATGATGGGATCAGCAAATTGGGCCGAAACATTGAACCATTATAACGAAATGGTTGAATCCAGAAATAACGATATCGCAATGATGGAGAGTAAGTGATTTTGTTACGTGGATTCCATTTGAATATTTTCAGAAACTGAAAACGAAATGTTGGATTTGTTGGGGAGATCAAAAGACTTGGATGATGAGAGAGCAATCGATTTATTAGCAGAAGCTAGAAATCTGCAATCGTCGATTGTAGCGAGGAACAAGGAAATCGCAGAGGTATCTATATGGGAATAGGCTTTGTTCTGTACTATTCTATTCCAGATTGAAACATCTTTGCGTTCAATTGAAAGTAAAATGTCTCAATGCATCGATTATTCTATGAAAGTTATTAAAATGAGCTACACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAATAGATTCTTTGTTTCAGGT</pcr_primer_p1>
		<pcr_primer_p2>GATATCGTTATTTCTGGATTCAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCAATAGATTCTTTGTTTCAGGTTATCAAAATTGGAAACCATCAGCATGAAGTTAACAAAAACTTCAGAGTGTTCTTTAGAACAAGAGGAGCCAATAATCTCAATTTGAAAAAGTCTGTCATAATTGACAATCAGTTTAGTGACGGAGAGTTGAGGCATGATATCTGTGAAATGATGGGATCAGCAAATTGGGCCGAAACATTGAACCATTATAACGAAATGGTTGAATCCAGAAATAACGATATC</canonical_amplicon>
		<polymorphic_amplicon>TCAATAGATTCTTTGTTTCAGGTTATCAAAATTGGAAACCATCAGCATGAAGTTAACAAARACTTCAGAGTGTTCTTTAGAACAAGAGGAGCCAATAATCTCAATTTGAAAAAGTCTGTCATAATTGACAATCAGTTTAGTGACGGAGAGTTGAGGCATGATATCTGTGAAATGATGGGATCAGCAAATTGGGCCGAAACATTGAACCATTATAACGAAATGGTTGAATCCAGAAATAACGATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13355</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>118157</contig_pos>
        <strand>+</strand>
        <context>AAAGTAGTTG[C/T]CTCGAATCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGATAGCCGAGCTTTGGAATTCTTAGAATCAAAATTCGAAAAAGTAGTTG</left_flank>
        <right_flank>CTCGAATCAATGGTCAGAAGCTGAACGCCAGCAGTGTCTAGCTTCGAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAAAATGTTCGGACCTTTTCAGAAAGTAACAGAAAAATTGCAAGGATTATCAGATCAATTCAGTCAGATGTGTCAAAAGAAACAGGAACTGGAATCCCAAATTTCCAGTTGTGAGGTTCGAATGGAAAGAGCCGAAAGACTTGTTCAAGCGTTGAGTGGAGAGAAAGACAAATGGAAAAGTAAAATAACGGATGTCACTCACGAAGATTCATTGAGTGTACCGTATTCTGTTGGATCTGCTCTAGCGTTGCATATTTTTGGGAAGTTGCCAATTGATCAGAGAGAAGTGATTTCCTGATTTGAAATTTGACAAAAAATTGTCTAATTATTCCAGAAAGAGCTTCGAAAGACCATGAGAAGCTTGTTCCCAAAATTGGAAATAACAATCGCTTGTGACTTGAAAACCTTGGTTATGCTGGTTGATGATCCAATCTGTTTCATTAACGATGATAGCCGAGCTTTGGAATTCTTAGAATCAAAATTCGAAAAAGTAGTTGTCTCGAATCAATGGTCAGAAGCTGAACGCCAGCAGTGTCTAGCTTCGAATTCAGTTTTGCTTTTTGAAATTAATCAAGAAAATTTGAAAGCGGCGGAAGAAATCGATAATGCAGAATATTACAGTCAGATGGAGGAAGAAATCGTGGGTTGATTAGCAATGATTTCAATAGATTCTTTGTTTCAGGTTATCAAAATTGGAAACCATCAGCATGAAGTTAACAAAAACTTCAGAGTGTTCTTTAGAACAAGAGGAGCCAATAATCTCAATTTGAAAAAGTCTGTCATAATTGACAATCAGTTTAGTGACGGAGAGTTGAGGCATGATATCTGTGAAATGATGGGATCAGCAAATTGGGCCGAAACATTGAACCATTATAACGAAATGGTTGAATCCAGAAATAACGATATCGCAATGATGGAGAGTAAGTGATTTTGTTACGTGGATTCCATTTGAATATTTTCAGAAACTGAAAACGAAATGTTGGATTTGTTGGGGAGAT</canonical>
            <polymorphic>CAAAAAATGTTCGGACCTTTTCAGAAAGTAACAGAAAAATTGCAAGGATTATCAGATCAATTCAGTCAGATGTGTCAAAAGAAACAGGAACTGGAATCCCAAATTTCCAGTTGTGAGGTTCGAATGGAAAGAGCCGAAAGACTTGTTCAAGCGTTGAGTGGAGAGAAAGACAAATGGAAAAGTAAAATAACGGATGTCACTCACGAAGATTCATTGAGTGTACCGTATTCTGTTGGATCTGCTCTAGCGTTGCATATTTTTGGGAAGTTGCCAATTGATCAGAGAGAAGTGATTTCCTGATTTGAAATTTGACAAAAAATTGTCTAATTATTCCAGAAAGAGCTTCGAAAGACCATGAGAAGCTTGTTCCCAAAATTGGAAATAACAATCGCTTGTGACTTGAAAACCTTGGTTATGCTGGTTGATGATCCAATCTGTTTCATTAACGATGATAGCCGAGCTTTGGAATTCTTAGAATCAAAATTCGAAAAAGTAGTTGYCTCGAATCAATGGTCAGAAGCTGAACGCCAGCAGTGTCTAGCTTCGAATTCAGTTTTGCTTTTTGAAATTAATCAAGAAAATTTGAAAGCGGCGGAAGAAATCGATAATGCAGAATATTACAGTCAGATGGAGGAAGAAATCGTGGGTTGATTAGCAATGATTTCAATAGATTCTTTGTTTCAGGTTATCAAAATTGGAAACCATCAGCATGAAGTTAACAAAAACTTCAGAGTGTTCTTTAGAACAAGAGGAGCCAATAATCTCAATTTGAAAAAGTCTGTCATAATTGACAATCAGTTTAGTGACGGAGAGTTGAGGCATGATATCTGTGAAATGATGGGATCAGCAAATTGGGCCGAAACATTGAACCATTATAACGAAATGGTTGAATCCAGAAATAACGATATCGCAATGATGGAGAGTAAGTGATTTTGTTACGTGGATTCCATTTGAATATTTTCAGAAACTGAAAACGAAATGTTGGATTTGTTGGGGAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>319 202 168 107 94 73 37</canonical_bands>
                <polymorphic_bands>319 241 202 107 94 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTCTAATTATTCCAGAAAGAGC</pcr_primer_p1>
		<pcr_primer_p2>TAATTTCAAAAAGCAAAACTGAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGTCTAATTATTCCAGAAAGAGCTTCGAAAGACCATGAGAAGCTTGTTCCCAAAATTGGAAATAACAATCGCTTGTGACTTGAAAACCTTGGTTATGCTGGTTGATGATCCAATCTGTTTCATTAACGATGATAGCCGAGCTTTGGAATTCTTAGAATCAAAATTCGAAAAAGTAGTTGTCTCGAATCAATGGTCAGAAGCTGAACGCCAGCAGTGTCTAGCTTCGAATTCAGTTTTGCTTTTTGAAATTA</canonical_amplicon>
		<polymorphic_amplicon>TGTCTAATTATTCCAGAAAGAGCTTCGAAAGACCATGAGAAGCTTGTTCCCAAAATTGGAAATAACAATCGCTTGTGACTTGAAAACCTTGGTTATGCTGGTTGATGATCCAATCTGTTTCATTAACGATGATAGCCGAGCTTTGGAATTCTTAGAATCAAAATTCGAAAAAGTAGTTGYCTCGAATCAATGGTCAGAAGCTGAACGCCAGCAGTGTCTAGCTTCGAATTCAGTTTTGCTTTTTGAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13356</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>117970</contig_pos>
        <strand>+</strand>
        <context>TGAAATTTRA[A/C]AAAAAATTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGAAGTTGCCAATTGATCAGAGAGAAGTGATTTCCTGATTTGAAATTTGA</left_flank>
        <right_flank>AAAAAATTGTCTAATTATTCCAGAAAGAGCTTCGAAAGACCATGAGAAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGTGTTCATTAGCAGCCGAGGGTCTGTGCAGATGGGTTCTGGCAATTGATATGTATAATCAAATCAGTAAGATCGTAGAGCCAAAACGGGAGAGATTGAGAAAAGCGGAAGTTTTGGTGAAGCAGCATTTAAAACAATTAGAAGTGAAGAGAAAAGCTTTGCTGGTAAGTTAGATTGTGAACTGACAAAAAATGTTCGGACCTTTTCAGAAAGTAACAGAAAAATTGCAAGGATTATCAGATCAATTCAGTCAGATGTGTCAAAAGAAACAGGAACTGGAATCCCAAATTTCCAGTTGTGAGGTTCGAATGGAAAGAGCCGAAAGACTTGTTCAAGCGTTGAGTGGAGAGAAAGACAAATGGAAAAGTAAAATAACGGATGTCACTCACGAAGATTCATTGAGTGTACCGTATTCTGTTGGATCTGCTCTAGCGTTGCATATTTTTGGGAAGTTGCCAATTGATCAGAGAGAAGTGATTTCCTGATTTGAAATTTGACAAAAAATTGTCTAATTATTCCAGAAAGAGCTTCGAAAGACCATGAGAAGCTTGTTCCCAAAATTGGAAATAACAATCGCTTGTGACTTGAAAACCTTGGTTATGCTGGTTGATGATCCAATCTGTTTCATTAACGATGATAGCCGAGCTTTGGAATTCTTAGAATCAAAATTCGAAAAAGTAGTTGTCTCGAATCAATGGTCAGAAGCTGAACGCCAGCAGTGTCTAGCTTCGAATTCAGTTTTGCTTTTTGAAATTAATCAAGAAAATTTGAAAGCGGCGGAAGAAATCGATAATGCAGAATATTACAGTCAGATGGAGGAAGAAATCGTGGGTTGATTAGCAATGATTTCAATAGATTCTTTGTTTCAGGTTATCAAAATTGGAAACCATCAGCATGAAGTTAACAAAAACTTCAGAGTGTTCTTTAGAACAAGAGGAGCCAATAATCTCAATTTGAAAAAGTCTGTCATAATTGACAATCAGTTTAGTGACGGAGAG</canonical>
            <polymorphic>ACAGTGTTCATTAGCAGCCGAGGGTCTGTGCAGATGGGTTCTGGCAATTGATATGTATAATCAAATCAGTAAGATCGTAGAGCCAAAACGGGAGAGATTGAGAAAAGCGGAAGTTTTGGTGAAGCAGCATTTAAAACAATTAGAAGTGAAGAGAAAAGCTTTGCTGGTAAGTTAGATTGTGAACTGACAAAAAATGTTCGGACCTTTTCAGAAAGTAACAGAAAAATTGCAAGGATTATCAGATCAATTCAGTCAGATGTGTCAAAAGAAACAGGAACTGGAATCCCAAATTTCCAGTTGTGAGGTTCGAATGGAAAGAGCCGAAAGACTTGTTCAAGCGTTGAGTGGAGAGAAAGACAAATGGAAAAGTAAAATAACGGATGTCACTCACGAAGATTCATTGAGTGTACCGTATTCTGTTGGATCTGCTCTAGCGTTGCATATTTTTGGGAAGTTGCCAATTGATCAGAGAGAAGTGATTTCCTGATTTGAAATTTGAMAAAAAATTGTCTAATTATTCCAGAAAGAGCTTCGAAAGACCATGAGAAGCTTGTTCCCAAAATTGGAAATAACAATCGCTTGTGACTTGAAAACCTTGGTTATGCTGGTTGATGATCCAATCTGTTTCATTAACGATGATAGCCGAGCTTTGGAATTCTTAGAATCAAAATTCGAAAAAGTAGTTGTCTCGAATCAATGGTCAGAAGCTGAACGCCAGCAGTGTCTAGCTTCGAATTCAGTTTTGCTTTTTGAAATTAATCAAGAAAATTTGAAAGCGGCGGAAGAAATCGATAATGCAGAATATTACAGTCAGATGGAGGAAGAAATCGTGGGTTGATTAGCAATGATTTCAATAGATTCTTTGTTTCAGGTTATCAAAATTGGAAACCATCAGCATGAAGTTAACAAAAACTTCAGAGTGTTCTTTAGAACAAGAGGAGCCAATAATCTCAATTTGAAAAAGTCTGTCATAATTGACAATCAGTTTAGTGACGGAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTCATTGAGTGTACCGTATTC</pcr_primer_p1>
		<pcr_primer_p2>GCTATCATCGTTAATGAAACAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATTCATTGAGTGTACCGTATTCTGTTGGATCTGCTCTAGCGTTGCATATTTTTGGGAAGTTGCCAATTGATCAGAGAGAAGTGATTTCCTGATTTGAAATTTGACAAAAAATTGTCTAATTATTCCAGAAAGAGCTTCGAAAGACCATGAGAAGCTTGTTCCCAAAATTGGAAATAACAATCGCTTGTGACTTGAAAACCTTGGTTATGCTGGTTGATGATCCAATCTGTTTCATTAACGATGATAGC</canonical_amplicon>
		<polymorphic_amplicon>GATTCATTGAGTGTACCGTATTCTGTTGGATCTGCTCTAGCGTTGCATATTTTTGGGAAGTTGCCAATTGATCAGAGAGAAGTGATTTCCTGATTTGAAATTTGAMAAAAAATTGTCTAATTATTCCAGAAAGAGCTTCGAAAGACCATGAGAAGCTTGTTCCCAAAATTGGAAATAACAATCGCTTGTGACTTGAAAACCTTGGTTATGCTGGTTGATGATCCAATCTGTTTCATTAACGATGATAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13357</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>135549</contig_pos>
        <strand></strand>
        <context>AATACCAACG[G/A]RCGATTCTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTTTTTTCCTTGAGAAAACCGTAAAAGCTGAACTTCAAAATACCAACG</left_flank>
        <right_flank>TCGATTCTTTTTAAAAACGTTTTAAAAAGTTGATCTGGATGAATAATCAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCGATTCTCCATCCTCTTTCTCTCTTGATTCAACTTTTATCCAACTACTATTTCACACTTTTCATCGATTCGTTTTTCTTCTATCATTATCGTGTCACAGATTGTAGAGCTCCGATGATACTATGTCATTAGTGTCAGGAAAAACAGAGAATTCGGCGAGATGGTCAATACGACCATCGTGTTCTTGTAATGACTCCCTGTTTACGATATCAGATACGGAGTGCTCCGAAATAGAAGCAGATATGCGGAACAAAGACCGACATAGCTGGAAAAGAAGGTTTACAAATAGATAAAAATCAGAACTGATGAAAGATCGTCTGGAATATTCGATCAATTAATTTTTTCTTGATTTCAGCCAACGCCGCAGTGTTCACAACATCGGAAACCCAGTAAGGAATTCATTTGTCGATGGAATAAAAAACACATCAACACCTAAAAATCAGGTTAGTTTTTTTTTCCTTGAGAAAACCGTAAAAGCTGAACTTCAAAATACCAACGGTCGATTCTTTTTAAAAACGTTTTAAAAAGTTGATCTGGATGAATAATCAATCAAAAGTCGTTTTTTGAAAAAGTTTATTTTTAAATTCACACCCTATTTTCACACTTTCTCGTTTTTTTTTTGGCTATATCGTCTGAACGCCTCATTTGTCCTCTACTGTTCACATTCCCTCATGCAAAAACCCAGTTTCCGACGGTCGGGCGATTGCAGATGCAATCTCACAAATTGGTGATTTTGACGGTGGCCACTTTTTATGTTCTTATTGGTGTTAATCTGGGGTTGGCTAGACGCTCCTTGTCTCTCAAGGAGTGTCAAAATGTCCTTGGCTTCGGAGTCAGCTAATTTTGTTTTCGGCTTCACATTCTCTATAAGTTGTATCTATTCCAAAGAGTCAGTAGAGAAGAAGATCCTTTCGGAAAGTTTACAAACATTTTCTACAAAACGCGGCAAACATTCAATCCATTGTGTTTATACGAATGAGTGTTTACCTGAATCCGAAC</canonical>
            <polymorphic>ACCGATTCTCCATCCTCTTTCTCTCTTGATTCAACTTTTATCCAACTACTATTTCACACTTTTCATCGATTCGTTTTTCTTCTATCATTATCGTGTCACAGATTGTAGAGCTCCGATGATACTATGTCATTAGTGTCAGGAAAAACAGAGAATTCGGCGAGATGGTCAATACGACCATCGTGTTCTTGTAATGACTCCCTGTTTACGATATCAGATACGGAGTGCTCCGAAATAGAAGCAGATATGCGGAACAAAGACCGACATAGCTGGAAAAGAAGGTTTACAAATAGATAAAAATCAGAACTGATGAAAGATCGTCTGGAATATTCGATCAATTAATTTTTTCTTGATTTCAGCCAACGCCGCAGTGTTCACAACATCGGAAACCCAGTAAGGAATTCATTTGTCGATGGAATAAAAAACACATCAACACCTAAAAATCAGGTTAGTTTTTTTTTCCTTGAGAAAACCGTAAAAGCTGAACTTCAAAATACCAACGRTCGATTCTTTTTAAAAACGTTTTAAAAAGTTGATCTGGATGAATAATCAATCAAAAGTCGTTTTTTGAAAAAGTTTATTTTTAAATTCACACCCTATTTTCACACTTTCTCGTTTTTTTTTTGGCTATATCGTCTGAACGCCTCATTTGTCCTCTACTGTTCACATTCCCTCATGCAAAAACCCAGTTTCCGACGGTCGGGCGATTGCAGATGCAATCTCACAAATTGGTGATTTTGACGGTGGCCACTTTTTATGTTCTTATTGGTGTTAATCTGGGGTTGGCTAGACGCTCCTTGTCTCTCAAGGAGTGTCAAAATGTCCTTGGCTTCGGAGTCAGCTAATTTTGTTTTCGGCTTCACATTCTCTATAAGTTGTATCTATTCCAAAGAGTCAGTAGAGAAGAAGATCCTTTCGGAAAGTTTACAAACATTTTCTACAAAACGCGGCAAACATTCAATCCATTGTGTTTATACGAATGAGTGTTTACCTGAATCCGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>501 303 196</canonical_bands>
                <polymorphic_bands>697 303</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>471 260 159 45 37 28</canonical_bands>
                <polymorphic_bands>471 260 187 45 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACACATCAACACCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATGTGAACAGTAGAGGACAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAACACATCAACACCTAAAAATCAGGTTAGTTTTTTTTTCCTTGAGAAAACCGTAAAAGCTGAACTTCAAAATACCAACGGTCGATTCTTTTTAAAAACGTTTTAAAAAGTTGATCTGGATGAATAATCAATCAAAAGTCGTTTTTTGAAAAAGTTTATTTTTAAATTCACACCCTATTTTCACACTTTCTCGTTTTTTTTTTGGCTATATCGTCTGAACGCCTCATTTGTCCTCTACTGTTCACATT</canonical_amplicon>
		<polymorphic_amplicon>AAAAACACATCAACACCTAAAAATCAGGTTAGTTTTTTTTTCCTTGAGAAAACCGTAAAAGCTGAACTTCAAAATACCAACGRTCGATTCTTTTTAAAAACGTTTTAAAAAGTTGATCTGGATGAATAATCAATCAAAAGTCGTTTTTTGAAAAAGTTTATTTTTAAATTCACACCCTATTTTCACACTTTCTCGTTTTTTTTTTGGCTATATCGTCTGAACGCCTCATTTGTCCTCTACTGTTCACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13358</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>135591</contig_pos>
        <strand>+</strand>
        <context>GATCTGGATG[A/G]ATAATCAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACCAACGGTCGATTCTTTTTAAAAACGTTTTAAAAAGTTGATCTGGATG</left_flank>
        <right_flank>ATAATCAATCAAAAGTCGTTTTTTGAAAAAGTTTATTTTTAAATTCACAC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACTACTATTTCACACTTTTCATCGATTCGTTTTTCTTCTATCATTATCGTGTCACAGATTGTAGAGCTCCGATGATACTATGTCATTAGTGTCAGGAAAAACAGAGAATTCGGCGAGATGGTCAATACGACCATCGTGTTCTTGTAATGACTCCCTGTTTACGATATCAGATACGGAGTGCTCCGAAATAGAAGCAGATATGCGGAACAAAGACCGACATAGCTGGAAAAGAAGGTTTACAAATAGATAAAAATCAGAACTGATGAAAGATCGTCTGGAATATTCGATCAATTAATTTTTTCTTGATTTCAGCCAACGCCGCAGTGTTCACAACATCGGAAACCCAGTAAGGAATTCATTTGTCGATGGAATAAAAAACACATCAACACCTAAAAATCAGGTTAGTTTTTTTTTCCTTGAGAAAACCGTAAAAGCTGAACTTCAAAATACCAACGGTCGATTCTTTTTAAAAACGTTTTAAAAAGTTGATCTGGATGAATAATCAATCAAAAGTCGTTTTTTGAAAAAGTTTATTTTTAAATTCACACCCTATTTTCACACTTTCTCGTTTTTTTTTTGGCTATATCGTCTGAACGCCTCATTTGTCCTCTACTGTTCACATTCCCTCATGCAAAAACCCAGTTTCCGACGGTCGGGCGATTGCAGATGCAATCTCACAAATTGGTGATTTTGACGGTGGCCACTTTTTATGTTCTTATTGGTGTTAATCTGGGGTTGGCTAGACGCTCCTTGTCTCTCAAGGAGTGTCAAAATGTCCTTGGCTTCGGAGTCAGCTAATTTTGTTTTCGGCTTCACATTCTCTATAAGTTGTATCTATTCCAAAGAGTCAGTAGAGAAGAAGATCCTTTCGGAAAGTTTACAAACATTTTCTACAAAACGCGGCAAACATTCAATCCATTGTGTTTATACGAATGAGTGTTTACCTGAATCCGAACCTTTTTATTATTGTACTTCTTCTCACTCTTCCACACCCTCTT</canonical>
            <polymorphic>CAACTACTATTTCACACTTTTCATCGATTCGTTTTTCTTCTATCATTATCGTGTCACAGATTGTAGAGCTCCGATGATACTATGTCATTAGTGTCAGGAAAAACAGAGAATTCGGCGAGATGGTCAATACGACCATCGTGTTCTTGTAATGACTCCCTGTTTACGATATCAGATACGGAGTGCTCCGAAATAGAAGCAGATATGCGGAACAAAGACCGACATAGCTGGAAAAGAAGGTTTACAAATAGATAAAAATCAGAACTGATGAAAGATCGTCTGGAATATTCGATCAATTAATTTTTTCTTGATTTCAGCCAACGCCGCAGTGTTCACAACATCGGAAACCCAGTAAGGAATTCATTTGTCGATGGAATAAAAAACACATCAACACCTAAAAATCAGGTTAGTTTTTTTTTCCTTGAGAAAACCGTAAAAGCTGAACTTCAAAATACCAACGGTCGATTCTTTTTAAAAACGTTTTAAAAAGTTGATCTGGATGRATAATCAATCAAAAGTCGTTTTTTGAAAAAGTTTATTTTTAAATTCACACCCTATTTTCACACTTTCTCGTTTTTTTTTTGGCTATATCGTCTGAACGCCTCATTTGTCCTCTACTGTTCACATTCCCTCATGCAAAAACCCAGTTTCCGACGGTCGGGCGATTGCAGATGCAATCTCACAAATTGGTGATTTTGACGGTGGCCACTTTTTATGTTCTTATTGGTGTTAATCTGGGGTTGGCTAGACGCTCCTTGTCTCTCAAGGAGTGTCAAAATGTCCTTGGCTTCGGAGTCAGCTAATTTTGTTTTCGGCTTCACATTCTCTATAAGTTGTATCTATTCCAAAGAGTCAGTAGAGAAGAAGATCCTTTCGGAAAGTTTACAAACATTTTCTACAAAACGCGGCAAACATTCAATCCATTGTGTTTATACGAATGAGTGTTTACCTGAATCCGAACCTTTTTATTATTGTACTTCTTCTCACTCTTCCACACCCTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACACATCAACACCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATGTGAACAGTAGAGGACAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAACACATCAACACCTAAAAATCAGGTTAGTTTTTTTTTCCTTGAGAAAACCGTAAAAGCTGAACTTCAAAATACCAACGGTCGATTCTTTTTAAAAACGTTTTAAAAAGTTGATCTGGATGAATAATCAATCAAAAGTCGTTTTTTGAAAAAGTTTATTTTTAAATTCACACCCTATTTTCACACTTTCTCGTTTTTTTTTTGGCTATATCGTCTGAACGCCTCATTTGTCCTCTACTGTTCACATT</canonical_amplicon>
		<polymorphic_amplicon>AAAAACACATCAACACCTAAAAATCAGGTTAGTTTTTTTTTCCTTGAGAAAACCGTAAAAGCTGAACTTCAAAATACCAACGGTCGATTCTTTTTAAAAACGTTTTAAAAAGTTGATCTGGATGRATAATCAATCAAAAGTCGTTTTTTGAAAAAGTTTATTTTTAAATTCACACCCTATTTTCACACTTTCTCGTTTTTTTTTTGGCTATATCGTCTGAACGCCTCATTTGTCCTCTACTGTTCACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13359</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>135610</contig_pos>
        <strand>+</strand>
        <context>TCAAAAGTCG[C/T]TTTTTGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAAAACGTTTTAAAAAGTTGATCTGGATGAATAATCAATCAAAAGTCG</left_flank>
        <right_flank>TTTTTGAAAAAGTTTATTTTTAAATTCACACCCTATTTTCACACTTTCTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCATCGATTCGTTTTTCTTCTATCATTATCGTGTCACAGATTGTAGAGCTCCGATGATACTATGTCATTAGTGTCAGGAAAAACAGAGAATTCGGCGAGATGGTCAATACGACCATCGTGTTCTTGTAATGACTCCCTGTTTACGATATCAGATACGGAGTGCTCCGAAATAGAAGCAGATATGCGGAACAAAGACCGACATAGCTGGAAAAGAAGGTTTACAAATAGATAAAAATCAGAACTGATGAAAGATCGTCTGGAATATTCGATCAATTAATTTTTTCTTGATTTCAGCCAACGCCGCAGTGTTCACAACATCGGAAACCCAGTAAGGAATTCATTTGTCGATGGAATAAAAAACACATCAACACCTAAAAATCAGGTTAGTTTTTTTTTCCTTGAGAAAACCGTAAAAGCTGAACTTCAAAATACCAACGGTCGATTCTTTTTAAAAACGTTTTAAAAAGTTGATCTGGATGAATAATCAATCAAAAGTCGTTTTTTGAAAAAGTTTATTTTTAAATTCACACCCTATTTTCACACTTTCTCGTTTTTTTTTTGGCTATATCGTCTGAACGCCTCATTTGTCCTCTACTGTTCACATTCCCTCATGCAAAAACCCAGTTTCCGACGGTCGGGCGATTGCAGATGCAATCTCACAAATTGGTGATTTTGACGGTGGCCACTTTTTATGTTCTTATTGGTGTTAATCTGGGGTTGGCTAGACGCTCCTTGTCTCTCAAGGAGTGTCAAAATGTCCTTGGCTTCGGAGTCAGCTAATTTTGTTTTCGGCTTCACATTCTCTATAAGTTGTATCTATTCCAAAGAGTCAGTAGAGAAGAAGATCCTTTCGGAAAGTTTACAAACATTTTCTACAAAACGCGGCAAACATTCAATCCATTGTGTTTATACGAATGAGTGTTTACCTGAATCCGAACCTTTTTATTATTGTACTTCTTCTCACTCTTCCACACCCTCTTCTATTCACACCAATTACTG</canonical>
            <polymorphic>TTCATCGATTCGTTTTTCTTCTATCATTATCGTGTCACAGATTGTAGAGCTCCGATGATACTATGTCATTAGTGTCAGGAAAAACAGAGAATTCGGCGAGATGGTCAATACGACCATCGTGTTCTTGTAATGACTCCCTGTTTACGATATCAGATACGGAGTGCTCCGAAATAGAAGCAGATATGCGGAACAAAGACCGACATAGCTGGAAAAGAAGGTTTACAAATAGATAAAAATCAGAACTGATGAAAGATCGTCTGGAATATTCGATCAATTAATTTTTTCTTGATTTCAGCCAACGCCGCAGTGTTCACAACATCGGAAACCCAGTAAGGAATTCATTTGTCGATGGAATAAAAAACACATCAACACCTAAAAATCAGGTTAGTTTTTTTTTCCTTGAGAAAACCGTAAAAGCTGAACTTCAAAATACCAACGGTCGATTCTTTTTAAAAACGTTTTAAAAAGTTGATCTGGATGAATAATCAATCAAAAGTCGYTTTTTGAAAAAGTTTATTTTTAAATTCACACCCTATTTTCACACTTTCTCGTTTTTTTTTTGGCTATATCGTCTGAACGCCTCATTTGTCCTCTACTGTTCACATTCCCTCATGCAAAAACCCAGTTTCCGACGGTCGGGCGATTGCAGATGCAATCTCACAAATTGGTGATTTTGACGGTGGCCACTTTTTATGTTCTTATTGGTGTTAATCTGGGGTTGGCTAGACGCTCCTTGTCTCTCAAGGAGTGTCAAAATGTCCTTGGCTTCGGAGTCAGCTAATTTTGTTTTCGGCTTCACATTCTCTATAAGTTGTATCTATTCCAAAGAGTCAGTAGAGAAGAAGATCCTTTCGGAAAGTTTACAAACATTTTCTACAAAACGCGGCAAACATTCAATCCATTGTGTTTATACGAATGAGTGTTTACCTGAATCCGAACCTTTTTATTATTGTACTTCTTCTCACTCTTCCACACCCTCTTCTATTCACACCAATTACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACACATCAACACCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATGTGAACAGTAGAGGACAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAACACATCAACACCTAAAAATCAGGTTAGTTTTTTTTTCCTTGAGAAAACCGTAAAAGCTGAACTTCAAAATACCAACGGTCGATTCTTTTTAAAAACGTTTTAAAAAGTTGATCTGGATGAATAATCAATCAAAAGTCGTTTTTTGAAAAAGTTTATTTTTAAATTCACACCCTATTTTCACACTTTCTCGTTTTTTTTTTGGCTATATCGTCTGAACGCCTCATTTGTCCTCTACTGTTCACATT</canonical_amplicon>
		<polymorphic_amplicon>AAAAACACATCAACACCTAAAAATCAGGTTAGTTTTTTTTTCCTTGAGAAAACCGTAAAAGCTGAACTTCAAAATACCAACGGTCGATTCTTTTTAAAAACGTTTTAAAAAGTTGATCTGGATGAATAATCAATCAAAAGTCGYTTTTTGAAAAAGTTTATTTTTAAATTCACACCCTATTTTCACACTTTCTCGTTTTTTTTTTGGCTATATCGTCTGAACGCCTCATTTGTCCTCTACTGTTCACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13361</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>135759</contig_pos>
        <strand>+</strand>
        <context>GGCGATTGCA[A/G]ATGCAATCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCACATTCCCTCATGCAAAAACCCAGTTTCCGACGGTCGGGCGATTGCA</left_flank>
        <right_flank>ATGCAATCTCACAAATTGGTGATTTTGACGGTGGCCACTTTTTATGTTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGATACGGAGTGCTCCGAAATAGAAGCAGATATGCGGAACAAAGACCGACATAGCTGGAAAAGAAGGTTTACAAATAGATAAAAATCAGAACTGATGAAAGATCGTCTGGAATATTCGATCAATTAATTTTTTCTTGATTTCAGCCAACGCCGCAGTGTTCACAACATCGGAAACCCAGTAAGGAATTCATTTGTCGATGGAATAAAAAACACATCAACACCTAAAAATCAGGTTAGTTTTTTTTTCCTTGAGAAAACCGTAAAAGCTGAACTTCAAAATACCAACGGTCGATTCTTTTTAAAAACGTTTTAAAAAGTTGATCTGGATGAATAATCAATCAAAAGTCGTTTTTTGAAAAAGTTTATTTTTAAATTCACACCCTATTTTCACACTTTCTCGTTTTTTTTTTGGCTATATCGTCTGAACGCCTCATTTGTCCTCTACTGTTCACATTCCCTCATGCAAAAACCCAGTTTCCGACGGTCGGGCGATTGCAGATGCAATCTCACAAATTGGTGATTTTGACGGTGGCCACTTTTTATGTTCTTATTGGTGTTAATCTGGGGTTGGCTAGACGCTCCTTGTCTCTCAAGGAGTGTCAAAATGTCCTTGGCTTCGGAGTCAGCTAATTTTGTTTTCGGCTTCACATTCTCTATAAGTTGTATCTATTCCAAAGAGTCAGTAGAGAAGAAGATCCTTTCGGAAAGTTTACAAACATTTTCTACAAAACGCGGCAAACATTCAATCCATTGTGTTTATACGAATGAGTGTTTACCTGAATCCGAACCTTTTTATTATTGTACTTCTTCTCACTCTTCCACACCCTCTTCTATTCACACCAATTACTGTTCGGAAATATATGGTATTCGTTGAGGAACGAATGCATTCAATTTTCTGTCCTTCCTCTTTTTTGTTCATGTATTCTGAATAGTTTTTTTCTGTCCCTCACTCTGCAGTTCTCTTCTCTTCTTCTTCATCTCGTCTCAGTTAGTTTTGC</canonical>
            <polymorphic>TCAGATACGGAGTGCTCCGAAATAGAAGCAGATATGCGGAACAAAGACCGACATAGCTGGAAAAGAAGGTTTACAAATAGATAAAAATCAGAACTGATGAAAGATCGTCTGGAATATTCGATCAATTAATTTTTTCTTGATTTCAGCCAACGCCGCAGTGTTCACAACATCGGAAACCCAGTAAGGAATTCATTTGTCGATGGAATAAAAAACACATCAACACCTAAAAATCAGGTTAGTTTTTTTTTCCTTGAGAAAACCGTAAAAGCTGAACTTCAAAATACCAACGGTCGATTCTTTTTAAAAACGTTTTAAAAAGTTGATCTGGATGAATAATCAATCAAAAGTCGTTTTTTGAAAAAGTTTATTTTTAAATTCACACCCTATTTTCACACTTTCTCGTTTTTTTTTTGGCTATATCGTCTGAACGCCTCATTTGTCCTCTACTGTTCACATTCCCTCATGCAAAAACCCAGTTTCCGACGGTCGGGCGATTGCARATGCAATCTCACAAATTGGTGATTTTGACGGTGGCCACTTTTTATGTTCTTATTGGTGTTAATCTGGGGTTGGCTAGACGCTCCTTGTCTCTCAAGGAGTGTCAAAATGTCCTTGGCTTCGGAGTCAGCTAATTTTGTTTTCGGCTTCACATTCTCTATAAGTTGTATCTATTCCAAAGAGTCAGTAGAGAAGAAGATCCTTTCGGAAAGTTTACAAACATTTTCTACAAAACGCGGCAAACATTCAATCCATTGTGTTTATACGAATGAGTGTTTACCTGAATCCGAACCTTTTTATTATTGTACTTCTTCTCACTCTTCCACACCCTCTTCTATTCACACCAATTACTGTTCGGAAATATATGGTATTCGTTGAGGAACGAATGCATTCAATTTTCTGTCCTTCCTCTTTTTTGTTCATGTATTCTGAATAGTTTTTTTCTGTCCCTCACTCTGCAGTTCTCTTCTCTTCTTCTTCATCTCGTCTCAGTTAGTTTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTCCTCTACTGTTCACATTC</pcr_primer_p1>
		<pcr_primer_p2>CTGACTCTTTGGAATAGATACAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGTCCTCTACTGTTCACATTCCCTCATGCAAAAACCCAGTTTCCGACGGTCGGGCGATTGCAGATGCAATCTCACAAATTGGTGATTTTGACGGTGGCCACTTTTTATGTTCTTATTGGTGTTAATCTGGGGTTGGCTAGACGCTCCTTGTCTCTCAAGGAGTGTCAAAATGTCCTTGGCTTCGGAGTCAGCTAATTTTGTTTTCGGCTTCACATTCTCTATAAGTTGTATCTATTCCAAAGAGTCAG</canonical_amplicon>
		<polymorphic_amplicon>TTTGTCCTCTACTGTTCACATTCCCTCATGCAAAAACCCAGTTTCCGACGGTCGGGCGATTGCARATGCAATCTCACAAATTGGTGATTTTGACGGTGGCCACTTTTTATGTTCTTATTGGTGTTAATCTGGGGTTGGCTAGACGCTCCTTGTCTCTCAAGGAGTGTCAAAATGTCCTTGGCTTCGGAGTCAGCTAATTTTGTTTTCGGCTTCACATTCTCTATAAGTTGTATCTATTCCAAAGAGTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13362</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>138226</contig_pos>
        <strand>+</strand>
        <context>TTTTTCAATT[G/T]CCATAGCTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTGAACCCCACTTCCTATATACTTCTTCCTGCTTATCACTTTTTCAATT</left_flank>
        <right_flank>CCATAGCTGTTTTTTTGTTGGCTCAAGAGCCATACGATTGCCATGACCAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATACATTCCATCTCCTCTTTTTTAGCTGAATATGGAGAGAAAAAATGCATGGAATTGTGGAGACCCGGTTCGAATAATTCGATTTCCTCTCCTCCTCCACCTCTCCTGTTGTCCTTTACCACACCCTTCCTCTCACTCTCTCTATATCCTCTACACTATTATCATAATTTTTCCTATTTCGAGTCGGGTTCATGTTCTCCAAAATGCTAATTTTTCAAAATGCAGCCCTTTCTCTACATTTCTCTCGGTTTTTTAACTGCCTTTCTGTAATTAAACCAACATTGTTTCCACCAAAAAATTGTAGGCATTTTGGAAAGTCTTGACACGCGCGACTACTTTTATTACCGATTATATATGTTAGTTTTTGTTCATGCTTCATTTGCTACTGTTTTTTTTATTCTTCGCTTACAGGTCATAATTTCTTTTAGTTTTTAGCAATTTGGAGACTGTGAACCCCACTTCCTATATACTTCTTCCTGCTTATCACTTTTTCAATTGCCATAGCTGTTTTTTTGTTGGCTCAAGAGCCATACGATTGCCATGACCATCCGCTTGTCTCTGTGTCCATCTTGCAGAAGCCTAGAAGATTGTTTGCCCATTTTTTTCCGCGCGCGTTGCGTTGCACCTCACTATGCCCATCATCATAAGCATAGAGTGTATGGTGGTGTCGTTTTTCTCTCTGTTGTTTCTACCGAAACCCACAGTCTTTTTCCCGAATTTCCTTCTCTCTGCGATCCTCCGTACTTTTCAGAGTCTACTTTAGTTCCAGAAACGCACGCGGACGAGTCTTTCCGCAGTAGCGCATGATATCCCCCTCTTCGGCGATTTCGACGTTTTTCACACCGAGACCTATTTTATCCTAGACTCCCGTGATGTTTTAATGTTATTACCATTCTTTCAATGTCACTCATTTCATTGTTTCTTCTTTCTCTTTCTCGCTCTCGATTACTCACATTTCTTTTTCAACTTGTGATACTGACCTAGAAATCGGGAATACA</canonical>
            <polymorphic>AAATACATTCCATCTCCTCTTTTTTAGCTGAATATGGAGAGAAAAAATGCATGGAATTGTGGAGACCCGGTTCGAATAATTCGATTTCCTCTCCTCCTCCACCTCTCCTGTTGTCCTTTACCACACCCTTCCTCTCACTCTCTCTATATCCTCTACACTATTATCATAATTTTTCCTATTTCGAGTCGGGTTCATGTTCTCCAAAATGCTAATTTTTCAAAATGCAGCCCTTTCTCTACATTTCTCTCGGTTTTTTAACTGCCTTTCTGTAATTAAACCAACATTGTTTCCACCAAAAAATTGTAGGCATTTTGGAAAGTCTTGACACGCGCGACTACTTTTATTACCGATTATATATGTTAGTTTTTGTTCATGCTTCATTTGCTACTGTTTTTTTTATTCTTCGCTTACAGGTCATAATTTCTTTTAGTTTTTAGCAATTTGGAGACTGTGAACCCCACTTCCTATATACTTCTTCCTGCTTATCACTTTTTCAATTKCCATAGCTGTTTTTTTGTTGGCTCAAGAGCCATACGATTGCCATGACCATCCGCTTGTCTCTGTGTCCATCTTGCAGAAGCCTAGAAGATTGTTTGCCCATTTTTTTCCGCGCGCGTTGCGTTGCACCTCACTATGCCCATCATCATAAGCATAGAGTGTATGGTGGTGTCGTTTTTCTCTCTGTTGTTTCTACCGAAACCCACAGTCTTTTTCCCGAATTTCCTTCTCTCTGCGATCCTCCGTACTTTTCAGAGTCTACTTTAGTTCCAGAAACGCACGCGGACGAGTCTTTCCGCAGTAGCGCATGATATCCCCCTCTTCGGCGATTTCGACGTTTTTCACACCGAGACCTATTTTATCCTAGACTCCCGTGATGTTTTAATGTTATTACCATTCTTTCAATGTCACTCATTTCATTGTTTCTTCTTTCTCTTTCTCGCTCTCGATTACTCACATTTCTTTTTCAACTTGTGATACTGACCTAGAAATCGGGAATACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAGTTTTTAGCAATTTGGAGA</pcr_primer_p1>
		<pcr_primer_p2>ACGACACCACCATACACTCTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTAGTTTTTAGCAATTTGGAGACTGTGAACCCCACTTCCTATATACTTCTTCCTGCTTATCACTTTTTCAATTGCCATAGCTGTTTTTTTGTTGGCTCAAGAGCCATACGATTGCCATGACCATCCGCTTGTCTCTGTGTCCATCTTGCAGAAGCCTAGAAGATTGTTTGCCCATTTTTTTCCGCGCGCGTTGCGTTGCACCTCACTATGCCCATCATCATAAGCATAGAGTGTATGGTGGTGTCGT</canonical_amplicon>
		<polymorphic_amplicon>TTTAGTTTTTAGCAATTTGGAGACTGTGAACCCCACTTCCTATATACTTCTTCCTGCTTATCACTTTTTCAATTKCCATAGCTGTTTTTTTGTTGGCTCAAGAGCCATACGATTGCCATGACCATCCGCTTGTCTCTGTGTCCATCTTGCAGAAGCCTAGAAGATTGTTTGCCCATTTTTTTCCGCGCGCGTTGCGTTGCACCTCACTATGCCCATCATCATAAGCATAGAGTGTATGGTGGTGTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13363</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>138119</contig_pos>
        <strand>+</strand>
        <context>TGCTACTGTT[G/T]TTTTTATTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTACCGATTATATATGTTAGTTTTTGTTCATGCTTCATTTGCTACTGTT</left_flank>
        <right_flank>TTTTTATTCTTCGCTTACAGGTCATAATTTCTTTTAGTTTTTAGCAATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATGTCATTTTCTGCTTTCCTTCCTTTCTTCTTTAGATTTTTCACCGCGAATAATTACCTGCTTTCCTCAAACTTTATAATTATCTTCTCATCGAAGCTTCTTCCAAAATACATTCCATCTCCTCTTTTTTAGCTGAATATGGAGAGAAAAAATGCATGGAATTGTGGAGACCCGGTTCGAATAATTCGATTTCCTCTCCTCCTCCACCTCTCCTGTTGTCCTTTACCACACCCTTCCTCTCACTCTCTCTATATCCTCTACACTATTATCATAATTTTTCCTATTTCGAGTCGGGTTCATGTTCTCCAAAATGCTAATTTTTCAAAATGCAGCCCTTTCTCTACATTTCTCTCGGTTTTTTAACTGCCTTTCTGTAATTAAACCAACATTGTTTCCACCAAAAAATTGTAGGCATTTTGGAAAGTCTTGACACGCGCGACTACTTTTATTACCGATTATATATGTTAGTTTTTGTTCATGCTTCATTTGCTACTGTTTTTTTTATTCTTCGCTTACAGGTCATAATTTCTTTTAGTTTTTAGCAATTTGGAGACTGTGAACCCCACTTCCTATATACTTCTTCCTGCTTATCACTTTTTCAATTGCCATAGCTGTTTTTTTGTTGGCTCAAGAGCCATACGATTGCCATGACCATCCGCTTGTCTCTGTGTCCATCTTGCAGAAGCCTAGAAGATTGTTTGCCCATTTTTTTCCGCGCGCGTTGCGTTGCACCTCACTATGCCCATCATCATAAGCATAGAGTGTATGGTGGTGTCGTTTTTCTCTCTGTTGTTTCTACCGAAACCCACAGTCTTTTTCCCGAATTTCCTTCTCTCTGCGATCCTCCGTACTTTTCAGAGTCTACTTTAGTTCCAGAAACGCACGCGGACGAGTCTTTCCGCAGTAGCGCATGATATCCCCCTCTTCGGCGATTTCGACGTTTTTCACACCGAGACCTATTTTATCCTAGACTCCCGTGATGTTTTAATGTTATTACC</canonical>
            <polymorphic>TTATGTCATTTTCTGCTTTCCTTCCTTTCTTCTTTAGATTTTTCACCGCGAATAATTACCTGCTTTCCTCAAACTTTATAATTATCTTCTCATCGAAGCTTCTTCCAAAATACATTCCATCTCCTCTTTTTTAGCTGAATATGGAGAGAAAAAATGCATGGAATTGTGGAGACCCGGTTCGAATAATTCGATTTCCTCTCCTCCTCCACCTCTCCTGTTGTCCTTTACCACACCCTTCCTCTCACTCTCTCTATATCCTCTACACTATTATCATAATTTTTCCTATTTCGAGTCGGGTTCATGTTCTCCAAAATGCTAATTTTTCAAAATGCAGCCCTTTCTCTACATTTCTCTCGGTTTTTTAACTGCCTTTCTGTAATTAAACCAACATTGTTTCCACCAAAAAATTGTAGGCATTTTGGAAAGTCTTGACACGCGCGACTACTTTTATTACCGATTATATATGTTAGTTTTTGTTCATGCTTCATTTGCTACTGTTKTTTTTATTCTTCGCTTACAGGTCATAATTTCTTTTAGTTTTTAGCAATTTGGAGACTGTGAACCCCACTTCCTATATACTTCTTCCTGCTTATCACTTTTTCAATTGCCATAGCTGTTTTTTTGTTGGCTCAAGAGCCATACGATTGCCATGACCATCCGCTTGTCTCTGTGTCCATCTTGCAGAAGCCTAGAAGATTGTTTGCCCATTTTTTTCCGCGCGCGTTGCGTTGCACCTCACTATGCCCATCATCATAAGCATAGAGTGTATGGTGGTGTCGTTTTTCTCTCTGTTGTTTCTACCGAAACCCACAGTCTTTTTCCCGAATTTCCTTCTCTCTGCGATCCTCCGTACTTTTCAGAGTCTACTTTAGTTCCAGAAACGCACGCGGACGAGTCTTTCCGCAGTAGCGCATGATATCCCCCTCTTCGGCGATTTCGACGTTTTTCACACCGAGACCTATTTTATCCTAGACTCCCGTGATGTTTTAATGTTATTACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCCCTTTCTCTACATTTCTCT</pcr_primer_p1>
		<pcr_primer_p2>GAAGTATATAGGAAGTGGGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCCCTTTCTCTACATTTCTCTCGGTTTTTTAACTGCCTTTCTGTAATTAAACCAACATTGTTTCCACCAAAAAATTGTAGGCATTTTGGAAAGTCTTGACACGCGCGACTACTTTTATTACCGATTATATATGTTAGTTTTTGTTCATGCTTCATTTGCTACTGTTTTTTTTATTCTTCGCTTACAGGTCATAATTTCTTTTAGTTTTTAGCAATTTGGAGACTGTGAACCCCACTTCCTATATACTTC</canonical_amplicon>
		<polymorphic_amplicon>AGCCCTTTCTCTACATTTCTCTCGGTTTTTTAACTGCCTTTCTGTAATTAAACCAACATTGTTTCCACCAAAAAATTGTAGGCATTTTGGAAAGTCTTGACACGCGCGACTACTTTTATTACCGATTATATATGTTAGTTTTTGTTCATGCTTCATTTGCTACTGTTKTTTTTATTCTTCGCTTACAGGTCATAATTTCTTTTAGTTTTTAGCAATTTGGAGACTGTGAACCCCACTTCCTATATACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13364</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>138093</contig_pos>
        <strand></strand>
        <context>ATGTTAGTTT[T/A]TGTWCATGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAGTCTTGACACGCGCGACTACTTTTATTACCGATTATATATGTTAGTTT</left_flank>
        <right_flank>TGTTCATGCTTCATTTGCTACTGTTTTTTTTATTCTTCGCTTACAGGTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTCCCCTATACCGTCAAACGGTTTTATGTCATTTTCTGCTTTCCTTCCTTTCTTCTTTAGATTTTTCACCGCGAATAATTACCTGCTTTCCTCAAACTTTATAATTATCTTCTCATCGAAGCTTCTTCCAAAATACATTCCATCTCCTCTTTTTTAGCTGAATATGGAGAGAAAAAATGCATGGAATTGTGGAGACCCGGTTCGAATAATTCGATTTCCTCTCCTCCTCCACCTCTCCTGTTGTCCTTTACCACACCCTTCCTCTCACTCTCTCTATATCCTCTACACTATTATCATAATTTTTCCTATTTCGAGTCGGGTTCATGTTCTCCAAAATGCTAATTTTTCAAAATGCAGCCCTTTCTCTACATTTCTCTCGGTTTTTTAACTGCCTTTCTGTAATTAAACCAACATTGTTTCCACCAAAAAATTGTAGGCATTTTGGAAAGTCTTGACACGCGCGACTACTTTTATTACCGATTATATATGTTAGTTTTTGTTCATGCTTCATTTGCTACTGTTTTTTTTATTCTTCGCTTACAGGTCATAATTTCTTTTAGTTTTTAGCAATTTGGAGACTGTGAACCCCACTTCCTATATACTTCTTCCTGCTTATCACTTTTTCAATTGCCATAGCTGTTTTTTTGTTGGCTCAAGAGCCATACGATTGCCATGACCATCCGCTTGTCTCTGTGTCCATCTTGCAGAAGCCTAGAAGATTGTTTGCCCATTTTTTTCCGCGCGCGTTGCGTTGCACCTCACTATGCCCATCATCATAAGCATAGAGTGTATGGTGGTGTCGTTTTTCTCTCTGTTGTTTCTACCGAAACCCACAGTCTTTTTCCCGAATTTCCTTCTCTCTGCGATCCTCCGTACTTTTCAGAGTCTACTTTAGTTCCAGAAACGCACGCGGACGAGTCTTTCCGCAGTAGCGCATGATATCCCCCTCTTCGGCGATTTCGACGTTTTTCACACCGAGACCTATTTTATCCTAGAC</canonical>
            <polymorphic>CAATTCCCCTATACCGTCAAACGGTTTTATGTCATTTTCTGCTTTCCTTCCTTTCTTCTTTAGATTTTTCACCGCGAATAATTACCTGCTTTCCTCAAACTTTATAATTATCTTCTCATCGAAGCTTCTTCCAAAATACATTCCATCTCCTCTTTTTTAGCTGAATATGGAGAGAAAAAATGCATGGAATTGTGGAGACCCGGTTCGAATAATTCGATTTCCTCTCCTCCTCCACCTCTCCTGTTGTCCTTTACCACACCCTTCCTCTCACTCTCTCTATATCCTCTACACTATTATCATAATTTTTCCTATTTCGAGTCGGGTTCATGTTCTCCAAAATGCTAATTTTTCAAAATGCAGCCCTTTCTCTACATTTCTCTCGGTTTTTTAACTGCCTTTCTGTAATTAAACCAACATTGTTTCCACCAAAAAATTGTAGGCATTTTGGAAAGTCTTGACACGCGCGACTACTTTTATTACCGATTATATATGTTAGTTTWTGTTCATGCTTCATTTGCTACTGTTTTTTTTATTCTTCGCTTACAGGTCATAATTTCTTTTAGTTTTTAGCAATTTGGAGACTGTGAACCCCACTTCCTATATACTTCTTCCTGCTTATCACTTTTTCAATTGCCATAGCTGTTTTTTTGTTGGCTCAAGAGCCATACGATTGCCATGACCATCCGCTTGTCTCTGTGTCCATCTTGCAGAAGCCTAGAAGATTGTTTGCCCATTTTTTTCCGCGCGCGTTGCGTTGCACCTCACTATGCCCATCATCATAAGCATAGAGTGTATGGTGGTGTCGTTTTTCTCTCTGTTGTTTCTACCGAAACCCACAGTCTTTTTCCCGAATTTCCTTCTCTCTGCGATCCTCCGTACTTTTCAGAGTCTACTTTAGTTCCAGAAACGCACGCGGACGAGTCTTTCCGCAGTAGCGCATGATATCCCCCTCTTCGGCGATTTCGACGTTTTTCACACCGAGACCTATTTTATCCTAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCCCTTTCTCTACATTTCTCT</pcr_primer_p1>
		<pcr_primer_p2>GAAGTATATAGGAAGTGGGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCCCTTTCTCTACATTTCTCTCGGTTTTTTAACTGCCTTTCTGTAATTAAACCAACATTGTTTCCACCAAAAAATTGTAGGCATTTTGGAAAGTCTTGACACGCGCGACTACTTTTATTACCGATTATATATGTTAGTTTTTGTTCATGCTTCATTTGCTACTGTTTTTTTTATTCTTCGCTTACAGGTCATAATTTCTTTTAGTTTTTAGCAATTTGGAGACTGTGAACCCCACTTCCTATATACTTC</canonical_amplicon>
		<polymorphic_amplicon>AGCCCTTTCTCTACATTTCTCTCGGTTTTTTAACTGCCTTTCTGTAATTAAACCAACATTGTTTCCACCAAAAAATTGTAGGCATTTTGGAAAGTCTTGACACGCGCGACTACTTTTATTACCGATTATATATGTTAGTTTWTGTTCATGCTTCATTTGCTACTGTTTTTTTTATTCTTCGCTTACAGGTCATAATTTCTTTTAGTTTTTAGCAATTTGGAGACTGTGAACCCCACTTCCTATATACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13365</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>138064</contig_pos>
        <strand>+</strand>
        <context>CGCKCGACTA[A/C]TTTTATTACC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCCACCAAAAAATTGTAGGCATTTTGGAAAGTCTTGACACGCGCGACTA</left_flank>
        <right_flank>TTTTATTACCGATTATATATGTTAGTTTTTGTTCATGCTTCATTTGCTAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATGACTGACATATCCGTTCCCGGTCTTCAATTCCCCTATACCGTCAAACGGTTTTATGTCATTTTCTGCTTTCCTTCCTTTCTTCTTTAGATTTTTCACCGCGAATAATTACCTGCTTTCCTCAAACTTTATAATTATCTTCTCATCGAAGCTTCTTCCAAAATACATTCCATCTCCTCTTTTTTAGCTGAATATGGAGAGAAAAAATGCATGGAATTGTGGAGACCCGGTTCGAATAATTCGATTTCCTCTCCTCCTCCACCTCTCCTGTTGTCCTTTACCACACCCTTCCTCTCACTCTCTCTATATCCTCTACACTATTATCATAATTTTTCCTATTTCGAGTCGGGTTCATGTTCTCCAAAATGCTAATTTTTCAAAATGCAGCCCTTTCTCTACATTTCTCTCGGTTTTTTAACTGCCTTTCTGTAATTAAACCAACATTGTTTCCACCAAAAAATTGTAGGCATTTTGGAAAGTCTTGACACGCGCGACTACTTTTATTACCGATTATATATGTTAGTTTTTGTTCATGCTTCATTTGCTACTGTTTTTTTTATTCTTCGCTTACAGGTCATAATTTCTTTTAGTTTTTAGCAATTTGGAGACTGTGAACCCCACTTCCTATATACTTCTTCCTGCTTATCACTTTTTCAATTGCCATAGCTGTTTTTTTGTTGGCTCAAGAGCCATACGATTGCCATGACCATCCGCTTGTCTCTGTGTCCATCTTGCAGAAGCCTAGAAGATTGTTTGCCCATTTTTTTCCGCGCGCGTTGCGTTGCACCTCACTATGCCCATCATCATAAGCATAGAGTGTATGGTGGTGTCGTTTTTCTCTCTGTTGTTTCTACCGAAACCCACAGTCTTTTTCCCGAATTTCCTTCTCTCTGCGATCCTCCGTACTTTTCAGAGTCTACTTTAGTTCCAGAAACGCACGCGGACGAGTCTTTCCGCAGTAGCGCATGATATCCCCCTCTTCGGCGATTTCGACGTTT</canonical>
            <polymorphic>GTATGACTGACATATCCGTTCCCGGTCTTCAATTCCCCTATACCGTCAAACGGTTTTATGTCATTTTCTGCTTTCCTTCCTTTCTTCTTTAGATTTTTCACCGCGAATAATTACCTGCTTTCCTCAAACTTTATAATTATCTTCTCATCGAAGCTTCTTCCAAAATACATTCCATCTCCTCTTTTTTAGCTGAATATGGAGAGAAAAAATGCATGGAATTGTGGAGACCCGGTTCGAATAATTCGATTTCCTCTCCTCCTCCACCTCTCCTGTTGTCCTTTACCACACCCTTCCTCTCACTCTCTCTATATCCTCTACACTATTATCATAATTTTTCCTATTTCGAGTCGGGTTCATGTTCTCCAAAATGCTAATTTTTCAAAATGCAGCCCTTTCTCTACATTTCTCTCGGTTTTTTAACTGCCTTTCTGTAATTAAACCAACATTGTTTCCACCAAAAAATTGTAGGCATTTTGGAAAGTCTTGACACGCGCGACTAMTTTTATTACCGATTATATATGTTAGTTTTTGTTCATGCTTCATTTGCTACTGTTTTTTTTATTCTTCGCTTACAGGTCATAATTTCTTTTAGTTTTTAGCAATTTGGAGACTGTGAACCCCACTTCCTATATACTTCTTCCTGCTTATCACTTTTTCAATTGCCATAGCTGTTTTTTTGTTGGCTCAAGAGCCATACGATTGCCATGACCATCCGCTTGTCTCTGTGTCCATCTTGCAGAAGCCTAGAAGATTGTTTGCCCATTTTTTTCCGCGCGCGTTGCGTTGCACCTCACTATGCCCATCATCATAAGCATAGAGTGTATGGTGGTGTCGTTTTTCTCTCTGTTGTTTCTACCGAAACCCACAGTCTTTTTCCCGAATTTCCTTCTCTCTGCGATCCTCCGTACTTTTCAGAGTCTACTTTAGTTCCAGAAACGCACGCGGACGAGTCTTTCCGCAGTAGCGCATGATATCCCCCTCTTCGGCGATTTCGACGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCCCTTTCTCTACATTTCTCT</pcr_primer_p1>
		<pcr_primer_p2>GAAGTATATAGGAAGTGGGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCCCTTTCTCTACATTTCTCTCGGTTTTTTAACTGCCTTTCTGTAATTAAACCAACATTGTTTCCACCAAAAAATTGTAGGCATTTTGGAAAGTCTTGACACGCGCGACTACTTTTATTACCGATTATATATGTTAGTTTTTGTTCATGCTTCATTTGCTACTGTTTTTTTTATTCTTCGCTTACAGGTCATAATTTCTTTTAGTTTTTAGCAATTTGGAGACTGTGAACCCCACTTCCTATATACTTC</canonical_amplicon>
		<polymorphic_amplicon>AGCCCTTTCTCTACATTTCTCTCGGTTTTTTAACTGCCTTTCTGTAATTAAACCAACATTGTTTCCACCAAAAAATTGTAGGCATTTTGGAAAGTCTTGACACGCGCGACTAMTTTTATTACCGATTATATATGTTAGTTTTTGTTCATGCTTCATTTGCTACTGTTTTTTTTATTCTTCGCTTACAGGTCATAATTTCTTTTAGTTTTTAGCAATTTGGAGACTGTGAACCCCACTTCCTATATACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13366</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>138057</contig_pos>
        <strand>+</strand>
        <context>CTTGACACGC[G/T]CGACTAMTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACATTGTTTCCACCAAAAAATTGTAGGCATTTTGGAAAGTCTTGACACGC</left_flank>
        <right_flank>CGACTACTTTTATTACCGATTATATATGTTAGTTTTTGTTCATGCTTCAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTGTCCGTATGACTGACATATCCGTTCCCGGTCTTCAATTCCCCTATACCGTCAAACGGTTTTATGTCATTTTCTGCTTTCCTTCCTTTCTTCTTTAGATTTTTCACCGCGAATAATTACCTGCTTTCCTCAAACTTTATAATTATCTTCTCATCGAAGCTTCTTCCAAAATACATTCCATCTCCTCTTTTTTAGCTGAATATGGAGAGAAAAAATGCATGGAATTGTGGAGACCCGGTTCGAATAATTCGATTTCCTCTCCTCCTCCACCTCTCCTGTTGTCCTTTACCACACCCTTCCTCTCACTCTCTCTATATCCTCTACACTATTATCATAATTTTTCCTATTTCGAGTCGGGTTCATGTTCTCCAAAATGCTAATTTTTCAAAATGCAGCCCTTTCTCTACATTTCTCTCGGTTTTTTAACTGCCTTTCTGTAATTAAACCAACATTGTTTCCACCAAAAAATTGTAGGCATTTTGGAAAGTCTTGACACGCGCGACTACTTTTATTACCGATTATATATGTTAGTTTTTGTTCATGCTTCATTTGCTACTGTTTTTTTTATTCTTCGCTTACAGGTCATAATTTCTTTTAGTTTTTAGCAATTTGGAGACTGTGAACCCCACTTCCTATATACTTCTTCCTGCTTATCACTTTTTCAATTGCCATAGCTGTTTTTTTGTTGGCTCAAGAGCCATACGATTGCCATGACCATCCGCTTGTCTCTGTGTCCATCTTGCAGAAGCCTAGAAGATTGTTTGCCCATTTTTTTCCGCGCGCGTTGCGTTGCACCTCACTATGCCCATCATCATAAGCATAGAGTGTATGGTGGTGTCGTTTTTCTCTCTGTTGTTTCTACCGAAACCCACAGTCTTTTTCCCGAATTTCCTTCTCTCTGCGATCCTCCGTACTTTTCAGAGTCTACTTTAGTTCCAGAAACGCACGCGGACGAGTCTTTCCGCAGTAGCGCATGATATCCCCCTCTTCGGCGATTTC</canonical>
            <polymorphic>CTTGTCCGTATGACTGACATATCCGTTCCCGGTCTTCAATTCCCCTATACCGTCAAACGGTTTTATGTCATTTTCTGCTTTCCTTCCTTTCTTCTTTAGATTTTTCACCGCGAATAATTACCTGCTTTCCTCAAACTTTATAATTATCTTCTCATCGAAGCTTCTTCCAAAATACATTCCATCTCCTCTTTTTTAGCTGAATATGGAGAGAAAAAATGCATGGAATTGTGGAGACCCGGTTCGAATAATTCGATTTCCTCTCCTCCTCCACCTCTCCTGTTGTCCTTTACCACACCCTTCCTCTCACTCTCTCTATATCCTCTACACTATTATCATAATTTTTCCTATTTCGAGTCGGGTTCATGTTCTCCAAAATGCTAATTTTTCAAAATGCAGCCCTTTCTCTACATTTCTCTCGGTTTTTTAACTGCCTTTCTGTAATTAAACCAACATTGTTTCCACCAAAAAATTGTAGGCATTTTGGAAAGTCTTGACACGCKCGACTACTTTTATTACCGATTATATATGTTAGTTTTTGTTCATGCTTCATTTGCTACTGTTTTTTTTATTCTTCGCTTACAGGTCATAATTTCTTTTAGTTTTTAGCAATTTGGAGACTGTGAACCCCACTTCCTATATACTTCTTCCTGCTTATCACTTTTTCAATTGCCATAGCTGTTTTTTTGTTGGCTCAAGAGCCATACGATTGCCATGACCATCCGCTTGTCTCTGTGTCCATCTTGCAGAAGCCTAGAAGATTGTTTGCCCATTTTTTTCCGCGCGCGTTGCGTTGCACCTCACTATGCCCATCATCATAAGCATAGAGTGTATGGTGGTGTCGTTTTTCTCTCTGTTGTTTCTACCGAAACCCACAGTCTTTTTCCCGAATTTCCTTCTCTCTGCGATCCTCCGTACTTTTCAGAGTCTACTTTAGTTCCAGAAACGCACGCGGACGAGTCTTTCCGCAGTAGCGCATGATATCCCCCTCTTCGGCGATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>388 279 166 110 51 2 2 2</canonical_bands>
                <polymorphic_bands>669 166 110 51 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 281 190 27 2</canonical_bands>
                <polymorphic_bands>781 190 27 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCCCTTTCTCTACATTTCTCT</pcr_primer_p1>
		<pcr_primer_p2>GAAGTATATAGGAAGTGGGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCCCTTTCTCTACATTTCTCTCGGTTTTTTAACTGCCTTTCTGTAATTAAACCAACATTGTTTCCACCAAAAAATTGTAGGCATTTTGGAAAGTCTTGACACGCGCGACTACTTTTATTACCGATTATATATGTTAGTTTTTGTTCATGCTTCATTTGCTACTGTTTTTTTTATTCTTCGCTTACAGGTCATAATTTCTTTTAGTTTTTAGCAATTTGGAGACTGTGAACCCCACTTCCTATATACTTC</canonical_amplicon>
		<polymorphic_amplicon>AGCCCTTTCTCTACATTTCTCTCGGTTTTTTAACTGCCTTTCTGTAATTAAACCAACATTGTTTCCACCAAAAAATTGTAGGCATTTTGGAAAGTCTTGACACGCKCGACTACTTTTATTACCGATTATATATGTTAGTTTTTGTTCATGCTTCATTTGCTACTGTTTTTTTTATTCTTCGCTTACAGGTCATAATTTCTTTTAGTTTTTAGCAATTTGGAGACTGTGAACCCCACTTCCTATATACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13383</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>172537</contig_pos>
        <strand>+</strand>
        <context>AACAGAAAAT[G/T]CATCAYATAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTAGAATATAGGAGCTCCATCCCTGTGGGACATTTATCTAAACAGAAAAT</left_flank>
        <right_flank>CATCATATATGTGCCTCTGAGTGCTCGAAAAATAGAAGGGCTCCTGTATC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGAATCAGATGCACTGACATTGAAAAGCTTCGTAAGGTGCACAAGGATCTCTGAAACTTGATAAAGACCTTTATCGAAATATGTTTTTTTTTCTGAAAATAATCATGCGGGTTTCCAATATTTTGCTGTCAATATAGCTTTAAAAATTCTAAATATTTTCAGTCCAATGCCCAAACAGTCCAATGTCTATTAGACTAGTGTCCAGAGTTGGCAACTTGAAAACTCTACTGTTTTTAGAGCTTTAATAAATCTGACTCACTTGAATACCAGCGAACCGAAAATTGAAAGGATACGTTAGTTGATTGTGTTGATAGTTTGATTCTACCTCCCGGTGCGATAAAGTTTTATGAGAGTAAAACAGTTCAACTAACTTTTCAACTTTTTGATTGAAGTCAATAACTTGTAGTATAGTAGCATTGGTGGTATTTGTACTTGGAATTGCAGTCACTAGAATATAGGAGCTCCATCCCTGTGGGACATTTATCTAAACAGAAAATTCATCATATATGTGCCTCTGAGTGCTCGAAAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCAGTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAATAAAGCCAGAAGTTGAAAAATAGAAGCCTATGGGCTTCTATCAGTATGGTATTTTATAGAATTGAATAAACATTTTAAATAAGGTTCAAATTTTAAACATTCATTATCTCATTAGAAATAATCCAGTCCGAAGAATCGTCGCAAAATTTCAATAAAACTAAAAGATTTAGCAGTGGACCATTTGACTTTAGTCGCAGTGAAATCGATATAAAATCCGTCTTTTTTAGCATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTC</canonical>
            <polymorphic>TGAGAATCAGATGCACTGACATTGAAAAGCTTCGTAAGGTGCACAAGGATCTCTGAAACTTGATAAAGACCTTTATCGAAATATGTTTTTTTTTCTGAAAATAATCATGCGGGTTTCCAATATTTTGCTGTCAATATAGCTTTAAAAATTCTAAATATTTTCAGTCCAATGCCCAAACAGTCCAATGTCTATTAGACTAGTGTCCAGAGTTGGCAACTTGAAAACTCTACTGTTTTTAGAGCTTTAATAAATCTGACTCACTTGAATACCAGCGAACCGAAAATTGAAAGGATACGTTAGTTGATTGTGTTGATAGTTTGATTCTACCTCCCGGTGCGATAAAGTTTTATGAGAGTAAAACAGTTCAACTAACTTTTCAACTTTTTGATTGAAGTCAATAACTTGTAGTATAGTAGCATTGGTGGTATTTGTACTTGGAATTGCAGTCACTAGAATATAGGAGCTCCATCCCTGTGGGACATTTATCTAAACAGAAAATKCATCATATATGTGCCTCTGAGTGCTCGAAAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCAGTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAATAAAGCCAGAAGTTGAAAAATAGAAGCCTATGGGCTTCTATCAGTATGGTATTTTATAGAATTGAATAAACATTTTAAATAAGGTTCAAATTTTAAACATTCATTATCTCATTAGAAATAATCCAGTCCGAAGAATCGTCGCAAAATTTCAATAAAACTAAAAGATTTAGCAGTGGACCATTTGACTTTAGTCGCAGTGAAATCGATATAAAATCCGTCTTTTTTAGCATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>350 235 213 146 56</canonical_bands>
                <polymorphic_bands>563 235 146 56</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>235 184 157 146 135 58 56 29</canonical_bands>
                <polymorphic_bands>242 235 157 146 135 56 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGCAGTCACTAGAATATAGGAG</pcr_primer_p1>
		<pcr_primer_p2>CTTCGGACTGGATTATTTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>316</pcr_amplicon_size>
		<canonical_amplicon>AATTGCAGTCACTAGAATATAGGAGCTCCATCCCTGTGGGACATTTATCTAAACAGAAAATTCATCATATATGTGCCTCTGAGTGCTCGAAAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCAGTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAATAAAGCCAGAAGTTGAAAAATAGAAGCCTATGGGCTTCTATCAGTATGGTATTTTATAGAATTGAATAAACATTTTAAATAAGGTTCAAATTTTAAACATTCATTATCTCATTAGAAATAATCCAGTCCGAAG</canonical_amplicon>
		<polymorphic_amplicon>AATTGCAGTCACTAGAATATAGGAGCTCCATCCCTGTGGGACATTTATCTAAACAGAAAATKCATCATATATGTGCCTCTGAGTGCTCGAAAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCAGTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAATAAAGCCAGAAGTTGAAAAATAGAAGCCTATGGGCTTCTATCAGTATGGTATTTTATAGAATTGAATAAACATTTTAAATAAGGTTCAAATTTTAAACATTCATTATCTCATTAGAAATAATCCAGTCCGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13384</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>172543</contig_pos>
        <strand>+</strand>
        <context>AAATKCATCA[C/T]ATATGTGCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATAGGAGCTCCATCCCTGTGGGACATTTATCTAAACAGAAAATTCATCA</left_flank>
        <right_flank>ATATGTGCCTCTGAGTGCTCGAAAAATAGAAGGGCTCCTGTATCTAACTG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGATGCACTGACATTGAAAAGCTTCGTAAGGTGCACAAGGATCTCTGAAACTTGATAAAGACCTTTATCGAAATATGTTTTTTTTTCTGAAAATAATCATGCGGGTTTCCAATATTTTGCTGTCAATATAGCTTTAAAAATTCTAAATATTTTCAGTCCAATGCCCAAACAGTCCAATGTCTATTAGACTAGTGTCCAGAGTTGGCAACTTGAAAACTCTACTGTTTTTAGAGCTTTAATAAATCTGACTCACTTGAATACCAGCGAACCGAAAATTGAAAGGATACGTTAGTTGATTGTGTTGATAGTTTGATTCTACCTCCCGGTGCGATAAAGTTTTATGAGAGTAAAACAGTTCAACTAACTTTTCAACTTTTTGATTGAAGTCAATAACTTGTAGTATAGTAGCATTGGTGGTATTTGTACTTGGAATTGCAGTCACTAGAATATAGGAGCTCCATCCCTGTGGGACATTTATCTAAACAGAAAATTCATCATATATGTGCCTCTGAGTGCTCGAAAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCAGTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAATAAAGCCAGAAGTTGAAAAATAGAAGCCTATGGGCTTCTATCAGTATGGTATTTTATAGAATTGAATAAACATTTTAAATAAGGTTCAAATTTTAAACATTCATTATCTCATTAGAAATAATCCAGTCCGAAGAATCGTCGCAAAATTTCAATAAAACTAAAAGATTTAGCAGTGGACCATTTGACTTTAGTCGCAGTGAAATCGATATAAAATCCGTCTTTTTTAGCATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAAAACA</canonical>
            <polymorphic>TCAGATGCACTGACATTGAAAAGCTTCGTAAGGTGCACAAGGATCTCTGAAACTTGATAAAGACCTTTATCGAAATATGTTTTTTTTTCTGAAAATAATCATGCGGGTTTCCAATATTTTGCTGTCAATATAGCTTTAAAAATTCTAAATATTTTCAGTCCAATGCCCAAACAGTCCAATGTCTATTAGACTAGTGTCCAGAGTTGGCAACTTGAAAACTCTACTGTTTTTAGAGCTTTAATAAATCTGACTCACTTGAATACCAGCGAACCGAAAATTGAAAGGATACGTTAGTTGATTGTGTTGATAGTTTGATTCTACCTCCCGGTGCGATAAAGTTTTATGAGAGTAAAACAGTTCAACTAACTTTTCAACTTTTTGATTGAAGTCAATAACTTGTAGTATAGTAGCATTGGTGGTATTTGTACTTGGAATTGCAGTCACTAGAATATAGGAGCTCCATCCCTGTGGGACATTTATCTAAACAGAAAATTCATCAYATATGTGCCTCTGAGTGCTCGAAAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCAGTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAATAAAGCCAGAAGTTGAAAAATAGAAGCCTATGGGCTTCTATCAGTATGGTATTTTATAGAATTGAATAAACATTTTAAATAAGGTTCAAATTTTAAACATTCATTATCTCATTAGAAATAATCCAGTCCGAAGAATCGTCGCAAAATTTCAATAAAACTAAAAGATTTAGCAGTGGACCATTTGACTTTAGTCGCAGTGAAATCGATATAAAATCCGTCTTTTTTAGCATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAAAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>498 465 37</canonical_bands>
                <polymorphic_bands>535 465</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATAGGAGCTCCATCCCTGT</pcr_primer_p1>
		<pcr_primer_p2>CGGACTGGATTATTTCTAATGA</pcr_primer_p2>
		<pcr_amplicon_size>296</pcr_amplicon_size>
		<canonical_amplicon>TATAGGAGCTCCATCCCTGTGGGACATTTATCTAAACAGAAAATTCATCATATATGTGCCTCTGAGTGCTCGAAAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCAGTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAATAAAGCCAGAAGTTGAAAAATAGAAGCCTATGGGCTTCTATCAGTATGGTATTTTATAGAATTGAATAAACATTTTAAATAAGGTTCAAATTTTAAACATTCATTATCTCATTAGAAATAATCCAGTCCG</canonical_amplicon>
		<polymorphic_amplicon>TATAGGAGCTCCATCCCTGTGGGACATTTATCTAAACAGAAAATTCATCAYATATGTGCCTCTGAGTGCTCGAAAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCAGTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAATAAAGCCAGAAGTTGAAAAATAGAAGCCTATGGGCTTCTATCAGTATGGTATTTTATAGAATTGAATAAACATTTTAAATAAGGTTCAAATTTTAAACATTCATTATCTCATTAGAAATAATCCAGTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13385</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>172561</contig_pos>
        <strand>+</strand>
        <context>CCTCTGAGTG[C/T]TCGAAAaata</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGGGACATTTATCTAAACAGAAAATTCATCATATATGTGCCTCTGAGTG</left_flank>
        <right_flank>TCGAAAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCAGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAGCTTCGTAAGGTGCACAAGGATCTCTGAAACTTGATAAAGACCTTTATCGAAATATGTTTTTTTTTCTGAAAATAATCATGCGGGTTTCCAATATTTTGCTGTCAATATAGCTTTAAAAATTCTAAATATTTTCAGTCCAATGCCCAAACAGTCCAATGTCTATTAGACTAGTGTCCAGAGTTGGCAACTTGAAAACTCTACTGTTTTTAGAGCTTTAATAAATCTGACTCACTTGAATACCAGCGAACCGAAAATTGAAAGGATACGTTAGTTGATTGTGTTGATAGTTTGATTCTACCTCCCGGTGCGATAAAGTTTTATGAGAGTAAAACAGTTCAACTAACTTTTCAACTTTTTGATTGAAGTCAATAACTTGTAGTATAGTAGCATTGGTGGTATTTGTACTTGGAATTGCAGTCACTAGAATATAGGAGCTCCATCCCTGTGGGACATTTATCTAAACAGAAAATTCATCATATATGTGCCTCTGAGTGCTCGAAAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCAGTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAATAAAGCCAGAAGTTGAAAAATAGAAGCCTATGGGCTTCTATCAGTATGGTATTTTATAGAATTGAATAAACATTTTAAATAAGGTTCAAATTTTAAACATTCATTATCTCATTAGAAATAATCCAGTCCGAAGAATCGTCGCAAAATTTCAATAAAACTAAAAGATTTAGCAGTGGACCATTTGACTTTAGTCGCAGTGAAATCGATATAAAATCCGTCTTTTTTAGCATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAAAACATCCGTTTTATTGTTGGTA</canonical>
            <polymorphic>AAAAGCTTCGTAAGGTGCACAAGGATCTCTGAAACTTGATAAAGACCTTTATCGAAATATGTTTTTTTTTCTGAAAATAATCATGCGGGTTTCCAATATTTTGCTGTCAATATAGCTTTAAAAATTCTAAATATTTTCAGTCCAATGCCCAAACAGTCCAATGTCTATTAGACTAGTGTCCAGAGTTGGCAACTTGAAAACTCTACTGTTTTTAGAGCTTTAATAAATCTGACTCACTTGAATACCAGCGAACCGAAAATTGAAAGGATACGTTAGTTGATTGTGTTGATAGTTTGATTCTACCTCCCGGTGCGATAAAGTTTTATGAGAGTAAAACAGTTCAACTAACTTTTCAACTTTTTGATTGAAGTCAATAACTTGTAGTATAGTAGCATTGGTGGTATTTGTACTTGGAATTGCAGTCACTAGAATATAGGAGCTCCATCCCTGTGGGACATTTATCTAAACAGAAAATTCATCATATATGTGCCTCTGAGTGYTCGAAAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCAGTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAATAAAGCCAGAAGTTGAAAAATAGAAGCCTATGGGCTTCTATCAGTATGGTATTTTATAGAATTGAATAAACATTTTAAATAAGGTTCAAATTTTAAACATTCATTATCTCATTAGAAATAATCCAGTCCGAAGAATCGTCGCAAAATTTCAATAAAACTAAAAGATTTAGCAGTGGACCATTTGACTTTAGTCGCAGTGAAATCGATATAAAATCCGTCTTTTTTAGCATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAAAACATCCGTTTTATTGTTGGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>499 422 60 19</canonical_bands>
                <polymorphic_bands>559 422 19</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>482 422 60 19 17</canonical_bands>
                <polymorphic_bands>482 422 77 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTGGGACATTTATCTAAACAG</pcr_primer_p1>
		<pcr_primer_p2>CGGACTGGATTATTTCTAATGA</pcr_primer_p2>
		<pcr_amplicon_size>280</pcr_amplicon_size>
		<canonical_amplicon>CTGTGGGACATTTATCTAAACAGAAAATTCATCATATATGTGCCTCTGAGTGCTCGAAAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCAGTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAATAAAGCCAGAAGTTGAAAAATAGAAGCCTATGGGCTTCTATCAGTATGGTATTTTATAGAATTGAATAAACATTTTAAATAAGGTTCAAATTTTAAACATTCATTATCTCATTAGAAATAATCCAGTCCG</canonical_amplicon>
		<polymorphic_amplicon>CTGTGGGACATTTATCTAAACAGAAAATTCATCATATATGTGCCTCTGAGTGYTCGAAAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCAGTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAATAAAGCCAGAAGTTGAAAAATAGAAGCCTATGGGCTTCTATCAGTATGGTATTTTATAGAATTGAATAAACATTTTAAATAAGGTTCAAATTTTAAACATTCATTATCTCATTAGAAATAATCCAGTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13386</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>172848</contig_pos>
        <strand>+</strand>
        <context>ATTTGACTTT[A/T]GTMGCAGTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGCAAAATTTCAATAAAACTAAAAGATTTAGCAGTGGACCATTTGACTTT</left_flank>
        <right_flank>GTCGCAGTGAAATCGATATAAAATCCGTCTTTTTTAGCATTCAATGGTAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAGTTTGATTCTACCTCCCGGTGCGATAAAGTTTTATGAGAGTAAAACAGTTCAACTAACTTTTCAACTTTTTGATTGAAGTCAATAACTTGTAGTATAGTAGCATTGGTGGTATTTGTACTTGGAATTGCAGTCACTAGAATATAGGAGCTCCATCCCTGTGGGACATTTATCTAAACAGAAAATTCATCATATATGTGCCTCTGAGTGCTCGAAAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCAGTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAATAAAGCCAGAAGTTGAAAAATAGAAGCCTATGGGCTTCTATCAGTATGGTATTTTATAGAATTGAATAAACATTTTAAATAAGGTTCAAATTTTAAACATTCATTATCTCATTAGAAATAATCCAGTCCGAAGAATCGTCGCAAAATTTCAATAAAACTAAAAGATTTAGCAGTGGACCATTTGACTTTAGTCGCAGTGAAATCGATATAAAATCCGTCTTTTTTAGCATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAAAACATCCGTTTTATTGTTGGTAATTTTCAATTGAAGACTCTTGTTCTGGGATAAATCAACGTTCTGTACATTGAGTGTGTAATTGAATTGTTCTTTCGAATAGTAAAACGTCGAATCCAGGGGTGTAAGCAGGCTGAGGTTGGTTCTGTATTCAGTTGAAGTGATGAATCCGTTTAAGTTTTTTTCTATGATATTACAGAAGTAACCGTAACGAGCAATATGAACTGTAGCGATTCCACCAGTGAGTACATAGGTTCTGACAACTCCTCGAAGTATTTGTGGAAGGTTTGGAGCTGTACTTGATGCGCT</canonical>
            <polymorphic>GATAGTTTGATTCTACCTCCCGGTGCGATAAAGTTTTATGAGAGTAAAACAGTTCAACTAACTTTTCAACTTTTTGATTGAAGTCAATAACTTGTAGTATAGTAGCATTGGTGGTATTTGTACTTGGAATTGCAGTCACTAGAATATAGGAGCTCCATCCCTGTGGGACATTTATCTAAACAGAAAATTCATCATATATGTGCCTCTGAGTGCTCGAAAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCAGTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAATAAAGCCAGAAGTTGAAAAATAGAAGCCTATGGGCTTCTATCAGTATGGTATTTTATAGAATTGAATAAACATTTTAAATAAGGTTCAAATTTTAAACATTCATTATCTCATTAGAAATAATCCAGTCCGAAGAATCGTCGCAAAATTTCAATAAAACTAAAAGATTTAGCAGTGGACCATTTGACTTTWGTCGCAGTGAAATCGATATAAAATCCGTCTTTTTTAGCATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAAAACATCCGTTTTATTGTTGGTAATTTTCAATTGAAGACTCTTGTTCTGGGATAAATCAACGTTCTGTACATTGAGTGTGTAATTGAATTGTTCTTTCGAATAGTAAAACGTCGAATCCAGGGGTGTAAGCAGGCTGAGGTTGGTTCTGTATTCAGTTGAAGTGATGAATCCGTTTAAGTTTTTTTCTATGATATTACAGAAGTAACCGTAACGAGCAATATGAACTGTAGCGATTCCACCAGTGAGTACATAGGTTCTGACAACTCCTCGAAGTATTTGTGGAAGGTTTGGAGCTGTACTTGATGCGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCATTAGAAATAATCCAGTCC</pcr_primer_p1>
		<pcr_primer_p2>CCTCAGAAAATATTTCAGGTACA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>TCTCATTAGAAATAATCCAGTCCGAAGAATCGTCGCAAAATTTCAATAAAACTAAAAGATTTAGCAGTGGACCATTTGACTTTAGTCGCAGTGAAATCGATATAAAATCCGTCTTTTTTAGCATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGG</canonical_amplicon>
		<polymorphic_amplicon>TCTCATTAGAAATAATCCAGTCCGAAGAATCGTCGCAAAATTTCAATAAAACTAAAAGATTTAGCAGTGGACCATTTGACTTTWGTCGCAGTGAAATCGATATAAAATCCGTCTTTTTTAGCATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13387</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>172851</contig_pos>
        <strand>+</strand>
        <context>TGACTTTWGT[A/C]GCAGTGAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAATTTCAATAAAACTAAAAGATTTAGCAGTGGACCATTTGACTTTAGT</left_flank>
        <right_flank>GCAGTGAAATCGATATAAAATCCGTCTTTTTTAGCATTCAATGGTAAATA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTTGATTCTACCTCCCGGTGCGATAAAGTTTTATGAGAGTAAAACAGTTCAACTAACTTTTCAACTTTTTGATTGAAGTCAATAACTTGTAGTATAGTAGCATTGGTGGTATTTGTACTTGGAATTGCAGTCACTAGAATATAGGAGCTCCATCCCTGTGGGACATTTATCTAAACAGAAAATTCATCATATATGTGCCTCTGAGTGCTCGAAAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCAGTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAATAAAGCCAGAAGTTGAAAAATAGAAGCCTATGGGCTTCTATCAGTATGGTATTTTATAGAATTGAATAAACATTTTAAATAAGGTTCAAATTTTAAACATTCATTATCTCATTAGAAATAATCCAGTCCGAAGAATCGTCGCAAAATTTCAATAAAACTAAAAGATTTAGCAGTGGACCATTTGACTTTAGTCGCAGTGAAATCGATATAAAATCCGTCTTTTTTAGCATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAAAACATCCGTTTTATTGTTGGTAATTTTCAATTGAAGACTCTTGTTCTGGGATAAATCAACGTTCTGTACATTGAGTGTGTAATTGAATTGTTCTTTCGAATAGTAAAACGTCGAATCCAGGGGTGTAAGCAGGCTGAGGTTGGTTCTGTATTCAGTTGAAGTGATGAATCCGTTTAAGTTTTTTTCTATGATATTACAGAAGTAACCGTAACGAGCAATATGAACTGTAGCGATTCCACCAGTGAGTACATAGGTTCTGACAACTCCTCGAAGTATTTGTGGAAGGTTTGGAGCTGTACTTGATGCGCTGAA</canonical>
            <polymorphic>AGTTTGATTCTACCTCCCGGTGCGATAAAGTTTTATGAGAGTAAAACAGTTCAACTAACTTTTCAACTTTTTGATTGAAGTCAATAACTTGTAGTATAGTAGCATTGGTGGTATTTGTACTTGGAATTGCAGTCACTAGAATATAGGAGCTCCATCCCTGTGGGACATTTATCTAAACAGAAAATTCATCATATATGTGCCTCTGAGTGCTCGAAAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCAGTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAATAAAGCCAGAAGTTGAAAAATAGAAGCCTATGGGCTTCTATCAGTATGGTATTTTATAGAATTGAATAAACATTTTAAATAAGGTTCAAATTTTAAACATTCATTATCTCATTAGAAATAATCCAGTCCGAAGAATCGTCGCAAAATTTCAATAAAACTAAAAGATTTAGCAGTGGACCATTTGACTTTAGTMGCAGTGAAATCGATATAAAATCCGTCTTTTTTAGCATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAAAACATCCGTTTTATTGTTGGTAATTTTCAATTGAAGACTCTTGTTCTGGGATAAATCAACGTTCTGTACATTGAGTGTGTAATTGAATTGTTCTTTCGAATAGTAAAACGTCGAATCCAGGGGTGTAAGCAGGCTGAGGTTGGTTCTGTATTCAGTTGAAGTGATGAATCCGTTTAAGTTTTTTTCTATGATATTACAGAAGTAACCGTAACGAGCAATATGAACTGTAGCGATTCCACCAGTGAGTACATAGGTTCTGACAACTCCTCGAAGTATTTGTGGAAGGTTTGGAGCTGTACTTGATGCGCTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNNGTC</site>
                <isoschizomers>
                    <enzyme>BoxI</enzyme>
                    <enzyme>BstPAI</enzyme>
                    <enzyme>PshAI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCATTAGAAATAATCCAGTCC</pcr_primer_p1>
		<pcr_primer_p2>CCTCAGAAAATATTTCAGGTACA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>TCTCATTAGAAATAATCCAGTCCGAAGAATCGTCGCAAAATTTCAATAAAACTAAAAGATTTAGCAGTGGACCATTTGACTTTAGTCGCAGTGAAATCGATATAAAATCCGTCTTTTTTAGCATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGG</canonical_amplicon>
		<polymorphic_amplicon>TCTCATTAGAAATAATCCAGTCCGAAGAATCGTCGCAAAATTTCAATAAAACTAAAAGATTTAGCAGTGGACCATTTGACTTTAGTMGCAGTGAAATCGATATAAAATCCGTCTTTTTTAGCATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13388</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>172924</contig_pos>
        <strand>+</strand>
        <context>ACTGACTTCC[A/T]TCTCGGTTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGTCTTTTTTAGCATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCC</left_flank>
        <right_flank>TCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGAAGTCAATAACTTGTAGTATAGTAGCATTGGTGGTATTTGTACTTGGAATTGCAGTCACTAGAATATAGGAGCTCCATCCCTGTGGGACATTTATCTAAACAGAAAATTCATCATATATGTGCCTCTGAGTGCTCGAAAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCAGTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAATAAAGCCAGAAGTTGAAAAATAGAAGCCTATGGGCTTCTATCAGTATGGTATTTTATAGAATTGAATAAACATTTTAAATAAGGTTCAAATTTTAAACATTCATTATCTCATTAGAAATAATCCAGTCCGAAGAATCGTCGCAAAATTTCAATAAAACTAAAAGATTTAGCAGTGGACCATTTGACTTTAGTCGCAGTGAAATCGATATAAAATCCGTCTTTTTTAGCATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAAAACATCCGTTTTATTGTTGGTAATTTTCAATTGAAGACTCTTGTTCTGGGATAAATCAACGTTCTGTACATTGAGTGTGTAATTGAATTGTTCTTTCGAATAGTAAAACGTCGAATCCAGGGGTGTAAGCAGGCTGAGGTTGGTTCTGTATTCAGTTGAAGTGATGAATCCGTTTAAGTTTTTTTCTATGATATTACAGAAGTAACCGTAACGAGCAATATGAACTGTAGCGATTCCACCAGTGAGTACATAGGTTCTGACAACTCCTCGAAGTATTTGTGGAAGGTTTGGAGCTGTACTTGATGCGCTGAAAATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAAGAGTTG</canonical>
            <polymorphic>ATTGAAGTCAATAACTTGTAGTATAGTAGCATTGGTGGTATTTGTACTTGGAATTGCAGTCACTAGAATATAGGAGCTCCATCCCTGTGGGACATTTATCTAAACAGAAAATTCATCATATATGTGCCTCTGAGTGCTCGAAAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCAGTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAATAAAGCCAGAAGTTGAAAAATAGAAGCCTATGGGCTTCTATCAGTATGGTATTTTATAGAATTGAATAAACATTTTAAATAAGGTTCAAATTTTAAACATTCATTATCTCATTAGAAATAATCCAGTCCGAAGAATCGTCGCAAAATTTCAATAAAACTAAAAGATTTAGCAGTGGACCATTTGACTTTAGTCGCAGTGAAATCGATATAAAATCCGTCTTTTTTAGCATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCWTCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAAAACATCCGTTTTATTGTTGGTAATTTTCAATTGAAGACTCTTGTTCTGGGATAAATCAACGTTCTGTACATTGAGTGTGTAATTGAATTGTTCTTTCGAATAGTAAAACGTCGAATCCAGGGGTGTAAGCAGGCTGAGGTTGGTTCTGTATTCAGTTGAAGTGATGAATCCGTTTAAGTTTTTTTCTATGATATTACAGAAGTAACCGTAACGAGCAATATGAACTGTAGCGATTCCACCAGTGAGTACATAGGTTCTGACAACTCCTCGAAGTATTTGTGGAAGGTTTGGAGCTGTACTTGATGCGCTGAAAATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAAGAGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATCGATATAAAATCCGTCTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTACAGAACGTTGATTTATCC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GAAATCGATATAAAATCCGTCTTTTTTAGCATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAAAACATCCGTTTTATTGTTGGTAATTTTCAATTGAAGACTCTTGTTCTGGGATAAATCAACGTTCTGTACAT</canonical_amplicon>
		<polymorphic_amplicon>GAAATCGATATAAAATCCGTCTTTTTTAGCATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCWTCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAAAACATCCGTTTTATTGTTGGTAATTTTCAATTGAAGACTCTTGTTCTGGGATAAATCAACGTTCTGTACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13389</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>173004</contig_pos>
        <strand>+</strand>
        <context>TTCTGAGGAT[G/T]TGCTTGAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGAT</left_flank>
        <right_flank>TGCTTGAAAGTTTGTTTGGCTTACACAACATTCAAAACATCCGTTTTATT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCCTGTGGGACATTTATCTAAACAGAAAATTCATCATATATGTGCCTCTGAGTGCTCGAAAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCAGTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAATAAAGCCAGAAGTTGAAAAATAGAAGCCTATGGGCTTCTATCAGTATGGTATTTTATAGAATTGAATAAACATTTTAAATAAGGTTCAAATTTTAAACATTCATTATCTCATTAGAAATAATCCAGTCCGAAGAATCGTCGCAAAATTTCAATAAAACTAAAAGATTTAGCAGTGGACCATTTGACTTTAGTCGCAGTGAAATCGATATAAAATCCGTCTTTTTTAGCATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAAAACATCCGTTTTATTGTTGGTAATTTTCAATTGAAGACTCTTGTTCTGGGATAAATCAACGTTCTGTACATTGAGTGTGTAATTGAATTGTTCTTTCGAATAGTAAAACGTCGAATCCAGGGGTGTAAGCAGGCTGAGGTTGGTTCTGTATTCAGTTGAAGTGATGAATCCGTTTAAGTTTTTTTCTATGATATTACAGAAGTAACCGTAACGAGCAATATGAACTGTAGCGATTCCACCAGTGAGTACATAGGTTCTGACAACTCCTCGAAGTATTTGTGGAAGGTTTGGAGCTGTACTTGATGCGCTGAAAATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAAGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATT</canonical>
            <polymorphic>ATCCCTGTGGGACATTTATCTAAACAGAAAATTCATCATATATGTGCCTCTGAGTGCTCGAAAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCAGTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAATAAAGCCAGAAGTTGAAAAATAGAAGCCTATGGGCTTCTATCAGTATGGTATTTTATAGAATTGAATAAACATTTTAAATAAGGTTCAAATTTTAAACATTCATTATCTCATTAGAAATAATCCAGTCCGAAGAATCGTCGCAAAATTTCAATAAAACTAAAAGATTTAGCAGTGGACCATTTGACTTTAGTCGCAGTGAAATCGATATAAAATCCGTCTTTTTTAGCATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATKTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAAAACATCCGTTTTATTGTTGGTAATTTTCAATTGAAGACTCTTGTTCTGGGATAAATCAACGTTCTGTACATTGAGTGTGTAATTGAATTGTTCTTTCGAATAGTAAAACGTCGAATCCAGGGGTGTAAGCAGGCTGAGGTTGGTTCTGTATTCAGTTGAAGTGATGAATCCGTTTAAGTTTTTTTCTATGATATTACAGAAGTAACCGTAACGAGCAATATGAACTGTAGCGATTCCACCAGTGAGTACATAGGTTCTGACAACTCCTCGAAGTATTTGTGGAAGGTTTGGAGCTGTACTTGATGCGCTGAAAATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAAGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCAATGGTAAATAAGGTGAG</pcr_primer_p1>
		<pcr_primer_p2>GAACAATTCAATTACACACTCAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAAAACATCCGTTTTATTGTTGGTAATTTTCAATTGAAGACTCTTGTTCTGGGATAAATCAACGTTCTGTACATTGAGTGTGTAATTGAATTGTTC</canonical_amplicon>
		<polymorphic_amplicon>CATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATKTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAAAACATCCGTTTTATTGTTGGTAATTTTCAATTGAAGACTCTTGTTCTGGGATAAATCAACGTTCTGTACATTGAGTGTGTAATTGAATTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13390</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>173037</contig_pos>
        <strand>+</strand>
        <context>ACACAACATT[C/T]AARACRTCCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATT</left_flank>
        <right_flank>AAAACATCCGTTTTATTGTTGGTAATTTTCAATTGAAGACTCTTGTTCTG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCATATATGTGCCTCTGAGTGCTCGAAAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCAGTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAATAAAGCCAGAAGTTGAAAAATAGAAGCCTATGGGCTTCTATCAGTATGGTATTTTATAGAATTGAATAAACATTTTAAATAAGGTTCAAATTTTAAACATTCATTATCTCATTAGAAATAATCCAGTCCGAAGAATCGTCGCAAAATTTCAATAAAACTAAAAGATTTAGCAGTGGACCATTTGACTTTAGTCGCAGTGAAATCGATATAAAATCCGTCTTTTTTAGCATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAAAACATCCGTTTTATTGTTGGTAATTTTCAATTGAAGACTCTTGTTCTGGGATAAATCAACGTTCTGTACATTGAGTGTGTAATTGAATTGTTCTTTCGAATAGTAAAACGTCGAATCCAGGGGTGTAAGCAGGCTGAGGTTGGTTCTGTATTCAGTTGAAGTGATGAATCCGTTTAAGTTTTTTTCTATGATATTACAGAAGTAACCGTAACGAGCAATATGAACTGTAGCGATTCCACCAGTGAGTACATAGGTTCTGACAACTCCTCGAAGTATTTGTGGAAGGTTTGGAGCTGTACTTGATGCGCTGAAAATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAAGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGC</canonical>
            <polymorphic>CATCATATATGTGCCTCTGAGTGCTCGAAAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCAGTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAATAAAGCCAGAAGTTGAAAAATAGAAGCCTATGGGCTTCTATCAGTATGGTATTTTATAGAATTGAATAAACATTTTAAATAAGGTTCAAATTTTAAACATTCATTATCTCATTAGAAATAATCCAGTCCGAAGAATCGTCGCAAAATTTCAATAAAACTAAAAGATTTAGCAGTGGACCATTTGACTTTAGTCGCAGTGAAATCGATATAAAATCCGTCTTTTTTAGCATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTYAAAACATCCGTTTTATTGTTGGTAATTTTCAATTGAAGACTCTTGTTCTGGGATAAATCAACGTTCTGTACATTGAGTGTGTAATTGAATTGTTCTTTCGAATAGTAAAACGTCGAATCCAGGGGTGTAAGCAGGCTGAGGTTGGTTCTGTATTCAGTTGAAGTGATGAATCCGTTTAAGTTTTTTTCTATGATATTACAGAAGTAACCGTAACGAGCAATATGAACTGTAGCGATTCCACCAGTGAGTACATAGGTTCTGACAACTCCTCGAAGTATTTGTGGAAGGTTTGGAGCTGTACTTGATGCGCTGAAAATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAAGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCAATGGTAAATAAGGTGAG</pcr_primer_p1>
		<pcr_primer_p2>GAACAATTCAATTACACACTCAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAAAACATCCGTTTTATTGTTGGTAATTTTCAATTGAAGACTCTTGTTCTGGGATAAATCAACGTTCTGTACATTGAGTGTGTAATTGAATTGTTC</canonical_amplicon>
		<polymorphic_amplicon>CATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTYAAAACATCCGTTTTATTGTTGGTAATTTTCAATTGAAGACTCTTGTTCTGGGATAAATCAACGTTCTGTACATTGAGTGTGTAATTGAATTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13391</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>173040</contig_pos>
        <strand>+</strand>
        <context>CAACATTYAA[A/G]ACRTCCGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAA</left_flank>
        <right_flank>ACATCCGTTTTATTGTTGGTAATTTTCAATTGAAGACTCTTGTTCTGGGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATATATGTGCCTCTGAGTGCTCGAAAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCAGTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAATAAAGCCAGAAGTTGAAAAATAGAAGCCTATGGGCTTCTATCAGTATGGTATTTTATAGAATTGAATAAACATTTTAAATAAGGTTCAAATTTTAAACATTCATTATCTCATTAGAAATAATCCAGTCCGAAGAATCGTCGCAAAATTTCAATAAAACTAAAAGATTTAGCAGTGGACCATTTGACTTTAGTCGCAGTGAAATCGATATAAAATCCGTCTTTTTTAGCATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAAAACATCCGTTTTATTGTTGGTAATTTTCAATTGAAGACTCTTGTTCTGGGATAAATCAACGTTCTGTACATTGAGTGTGTAATTGAATTGTTCTTTCGAATAGTAAAACGTCGAATCCAGGGGTGTAAGCAGGCTGAGGTTGGTTCTGTATTCAGTTGAAGTGATGAATCCGTTTAAGTTTTTTTCTATGATATTACAGAAGTAACCGTAACGAGCAATATGAACTGTAGCGATTCCACCAGTGAGTACATAGGTTCTGACAACTCCTCGAAGTATTTGTGGAAGGTTTGGAGCTGTACTTGATGCGCTGAAAATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAAGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGA</canonical>
            <polymorphic>CATATATGTGCCTCTGAGTGCTCGAAAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCAGTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAATAAAGCCAGAAGTTGAAAAATAGAAGCCTATGGGCTTCTATCAGTATGGTATTTTATAGAATTGAATAAACATTTTAAATAAGGTTCAAATTTTAAACATTCATTATCTCATTAGAAATAATCCAGTCCGAAGAATCGTCGCAAAATTTCAATAAAACTAAAAGATTTAGCAGTGGACCATTTGACTTTAGTCGCAGTGAAATCGATATAAAATCCGTCTTTTTTAGCATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAARACATCCGTTTTATTGTTGGTAATTTTCAATTGAAGACTCTTGTTCTGGGATAAATCAACGTTCTGTACATTGAGTGTGTAATTGAATTGTTCTTTCGAATAGTAAAACGTCGAATCCAGGGGTGTAAGCAGGCTGAGGTTGGTTCTGTATTCAGTTGAAGTGATGAATCCGTTTAAGTTTTTTTCTATGATATTACAGAAGTAACCGTAACGAGCAATATGAACTGTAGCGATTCCACCAGTGAGTACATAGGTTCTGACAACTCCTCGAAGTATTTGTGGAAGGTTTGGAGCTGTACTTGATGCGCTGAAAATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAAGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCAATGGTAAATAAGGTGAG</pcr_primer_p1>
		<pcr_primer_p2>GAACAATTCAATTACACACTCAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAAAACATCCGTTTTATTGTTGGTAATTTTCAATTGAAGACTCTTGTTCTGGGATAAATCAACGTTCTGTACATTGAGTGTGTAATTGAATTGTTC</canonical_amplicon>
		<polymorphic_amplicon>CATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAARACATCCGTTTTATTGTTGGTAATTTTCAATTGAAGACTCTTGTTCTGGGATAAATCAACGTTCTGTACATTGAGTGTGTAATTGAATTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13392</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>173043</contig_pos>
        <strand>+</strand>
        <context>CATTYAARAC[A/G]TCCGTTTTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAAAAC</left_flank>
        <right_flank>TCCGTTTTATTGTTGGTAATTTTCAATTGAAGACTCTTGTTCTGGGATAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATGTGCCTCTGAGTGCTCGAAAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCAGTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAATAAAGCCAGAAGTTGAAAAATAGAAGCCTATGGGCTTCTATCAGTATGGTATTTTATAGAATTGAATAAACATTTTAAATAAGGTTCAAATTTTAAACATTCATTATCTCATTAGAAATAATCCAGTCCGAAGAATCGTCGCAAAATTTCAATAAAACTAAAAGATTTAGCAGTGGACCATTTGACTTTAGTCGCAGTGAAATCGATATAAAATCCGTCTTTTTTAGCATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAAAACATCCGTTTTATTGTTGGTAATTTTCAATTGAAGACTCTTGTTCTGGGATAAATCAACGTTCTGTACATTGAGTGTGTAATTGAATTGTTCTTTCGAATAGTAAAACGTCGAATCCAGGGGTGTAAGCAGGCTGAGGTTGGTTCTGTATTCAGTTGAAGTGATGAATCCGTTTAAGTTTTTTTCTATGATATTACAGAAGTAACCGTAACGAGCAATATGAACTGTAGCGATTCCACCAGTGAGTACATAGGTTCTGACAACTCCTCGAAGTATTTGTGGAAGGTTTGGAGCTGTACTTGATGCGCTGAAAATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAAGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTG</canonical>
            <polymorphic>ATATGTGCCTCTGAGTGCTCGAAAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCAGTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAATAAAGCCAGAAGTTGAAAAATAGAAGCCTATGGGCTTCTATCAGTATGGTATTTTATAGAATTGAATAAACATTTTAAATAAGGTTCAAATTTTAAACATTCATTATCTCATTAGAAATAATCCAGTCCGAAGAATCGTCGCAAAATTTCAATAAAACTAAAAGATTTAGCAGTGGACCATTTGACTTTAGTCGCAGTGAAATCGATATAAAATCCGTCTTTTTTAGCATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAAAACRTCCGTTTTATTGTTGGTAATTTTCAATTGAAGACTCTTGTTCTGGGATAAATCAACGTTCTGTACATTGAGTGTGTAATTGAATTGTTCTTTCGAATAGTAAAACGTCGAATCCAGGGGTGTAAGCAGGCTGAGGTTGGTTCTGTATTCAGTTGAAGTGATGAATCCGTTTAAGTTTTTTTCTATGATATTACAGAAGTAACCGTAACGAGCAATATGAACTGTAGCGATTCCACCAGTGAGTACATAGGTTCTGACAACTCCTCGAAGTATTTGTGGAAGGTTTGGAGCTGTACTTGATGCGCTGAAAATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAAGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCAATGGTAAATAAGGTGAG</pcr_primer_p1>
		<pcr_primer_p2>GAACAATTCAATTACACACTCAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAAAACATCCGTTTTATTGTTGGTAATTTTCAATTGAAGACTCTTGTTCTGGGATAAATCAACGTTCTGTACATTGAGTGTGTAATTGAATTGTTC</canonical_amplicon>
		<polymorphic_amplicon>CATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAAAACRTCCGTTTTATTGTTGGTAATTTTCAATTGAAGACTCTTGTTCTGGGATAAATCAACGTTCTGTACATTGAGTGTGTAATTGAATTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13393</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>173065</contig_pos>
        <strand>+</strand>
        <context>GTTGGTAATT[C/T]TCAATTGAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGTTTGGCTTACACAACATTCAAAACATCCGTTTTATTGTTGGTAATT</left_flank>
        <right_flank>TCAATTGAAGACTCTTGTTCTGGGATAAATCAACGTTCTGTACATTGAGT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCAGTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAATAAAGCCAGAAGTTGAAAAATAGAAGCCTATGGGCTTCTATCAGTATGGTATTTTATAGAATTGAATAAACATTTTAAATAAGGTTCAAATTTTAAACATTCATTATCTCATTAGAAATAATCCAGTCCGAAGAATCGTCGCAAAATTTCAATAAAACTAAAAGATTTAGCAGTGGACCATTTGACTTTAGTCGCAGTGAAATCGATATAAAATCCGTCTTTTTTAGCATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAAAACATCCGTTTTATTGTTGGTAATTTTCAATTGAAGACTCTTGTTCTGGGATAAATCAACGTTCTGTACATTGAGTGTGTAATTGAATTGTTCTTTCGAATAGTAAAACGTCGAATCCAGGGGTGTAAGCAGGCTGAGGTTGGTTCTGTATTCAGTTGAAGTGATGAATCCGTTTAAGTTTTTTTCTATGATATTACAGAAGTAACCGTAACGAGCAATATGAACTGTAGCGATTCCACCAGTGAGTACATAGGTTCTGACAACTCCTCGAAGTATTTGTGGAAGGTTTGGAGCTGTACTTGATGCGCTGAAAATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAAGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACCCCGTG</canonical>
            <polymorphic>AAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCAGTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAATAAAGCCAGAAGTTGAAAAATAGAAGCCTATGGGCTTCTATCAGTATGGTATTTTATAGAATTGAATAAACATTTTAAATAAGGTTCAAATTTTAAACATTCATTATCTCATTAGAAATAATCCAGTCCGAAGAATCGTCGCAAAATTTCAATAAAACTAAAAGATTTAGCAGTGGACCATTTGACTTTAGTCGCAGTGAAATCGATATAAAATCCGTCTTTTTTAGCATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAAAACATCCGTTTTATTGTTGGTAATTYTCAATTGAAGACTCTTGTTCTGGGATAAATCAACGTTCTGTACATTGAGTGTGTAATTGAATTGTTCTTTCGAATAGTAAAACGTCGAATCCAGGGGTGTAAGCAGGCTGAGGTTGGTTCTGTATTCAGTTGAAGTGATGAATCCGTTTAAGTTTTTTTCTATGATATTACAGAAGTAACCGTAACGAGCAATATGAACTGTAGCGATTCCACCAGTGAGTACATAGGTTCTGACAACTCCTCGAAGTATTTGTGGAAGGTTTGGAGCTGTACTTGATGCGCTGAAAATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAAGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACCCCGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCAATGGTAAATAAGGTGAG</pcr_primer_p1>
		<pcr_primer_p2>GAACAATTCAATTACACACTCAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAAAACATCCGTTTTATTGTTGGTAATTTTCAATTGAAGACTCTTGTTCTGGGATAAATCAACGTTCTGTACATTGAGTGTGTAATTGAATTGTTC</canonical_amplicon>
		<polymorphic_amplicon>CATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAAAACATCCGTTTTATTGTTGGTAATTYTCAATTGAAGACTCTTGTTCTGGGATAAATCAACGTTCTGTACATTGAGTGTGTAATTGAATTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13394</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>175047</contig_pos>
        <strand>+</strand>
        <context>AATTTTGTAA[A/T]CAACTGATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATATTCTTCTTTTTGAATCTAATCACTAGCGAATTCTAAAATTTTGTAA</left_flank>
        <right_flank>CAACTGATAAGCGGTATCAGAGGTTTGCAATGTTTCATTCCGAAAAAGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCCCTGTGGGACATTCATCTGAAATACTCCAGATAAAAATTATCATTCTCTTGTCAACCGGGATTGAATCAATTTCGTATCAATTTGTAAGTTATGAGAATGATAAAATCGGTAAAAGAAAGACAACTTGTAACCTGATAAACGCAGTTGTAACCATTAGAAAGCAACACTGGATTCCAGTGATCTGGGTACCAAAATTCATTGGAAATGCCATTCGGTGGATTTAATGTTCCGGGACAAGCTCAAAATTCAAATCGATTTTGTTGGAATAATGTAAAGTAGTTACTCACCTGGACCATCAGCTAAAACTCTATTTGAAAGTGCAAGAAATAGAAATGTGCCAATGTAAAATCCCATTTTTTAACGGCGAATGAAACGTTGTGTACACTTTCTTTGATACCGTACACCTTAAAAAATGAACGGTGAATCATAGAAACTCCCATCAGTCATATTCTTCTTTTTGAATCTAATCACTAGCGAATTCTAAAATTTTGTAAACAACTGATAAGCGGTATCAGAGGTTTGCAATGTTTCATTCCGAAAAAGTTCACATCCGCCGATATGAAATTATATCGAGTTACCCAAATATTAAGGTTTTCGGTTTAATCTAAAAGAAGAGATGTAACCATTCTTATAATCCGGGCTTTTCCCGGTTCTTCGCGGGCCCCGCCAAAGTTTCTTTCAGAATCAAAAGATTAACTAAATTGGATATGATAAAGCTTGACGAGTACTACAAAGCAGGCCTTAAAATGGCCTTTTTCGGACGTGCCGATCACAGACTCTTCTGTTATCAATAGTTGTAGACTAATGATAAGAGATAATTAATTTGGAATAATTTGTTCTGAAGATGATTGATTAAAATTGATAGACAGAATTTAATTAATCTCAGAATTACAGAATCCTAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCCGGATCTCAGAATCTCAGATTCTCAGGATGTTGGGATTTCAGAATCT</canonical>
            <polymorphic>CATCCCTGTGGGACATTCATCTGAAATACTCCAGATAAAAATTATCATTCTCTTGTCAACCGGGATTGAATCAATTTCGTATCAATTTGTAAGTTATGAGAATGATAAAATCGGTAAAAGAAAGACAACTTGTAACCTGATAAACGCAGTTGTAACCATTAGAAAGCAACACTGGATTCCAGTGATCTGGGTACCAAAATTCATTGGAAATGCCATTCGGTGGATTTAATGTTCCGGGACAAGCTCAAAATTCAAATCGATTTTGTTGGAATAATGTAAAGTAGTTACTCACCTGGACCATCAGCTAAAACTCTATTTGAAAGTGCAAGAAATAGAAATGTGCCAATGTAAAATCCCATTTTTTAACGGCGAATGAAACGTTGTGTACACTTTCTTTGATACCGTACACCTTAAAAAATGAACGGTGAATCATAGAAACTCCCATCAGTCATATTCTTCTTTTTGAATCTAATCACTAGCGAATTCTAAAATTTTGTAAWCAACTGATAAGCGGTATCAGAGGTTTGCAATGTTTCATTCCGAAAAAGTTCACATCCGCCGATATGAAATTATATCGAGTTACCCAAATATTAAGGTTTTCGGTTTAATCTAAAAGAAGAGATGTAACCATTCTTATAATCCGGGCTTTTCCCGGTTCTTCGCGGGCCCCGCCAAAGTTTCTTTCAGAATCAAAAGATTAACTAAATTGGATATGATAAAGCTTGACGAGTACTACAAAGCAGGCCTTAAAATGGCCTTTTTCGGACGTGCCGATCACAGACTCTTCTGTTATCAATAGTTGTAGACTAATGATAAGAGATAATTAATTTGGAATAATTTGTTCTGAAGATGATTGATTAAAATTGATAGACAGAATTTAATTAATCTCAGAATTACAGAATCCTAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCCGGATCTCAGAATCTCAGATTCTCAGGATGTTGGGATTTCAGAATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>328 254 196 92 57 52 21</canonical_bands>
                <polymorphic_bands>328 254 196 144 57 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGATACCGTACACCTTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCGGATTATAAGAATGGTTACAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGATACCGTACACCTTAAAAAATGAACGGTGAATCATAGAAACTCCCATCAGTCATATTCTTCTTTTTGAATCTAATCACTAGCGAATTCTAAAATTTTGTAAACAACTGATAAGCGGTATCAGAGGTTTGCAATGTTTCATTCCGAAAAAGTTCACATCCGCCGATATGAAATTATATCGAGTTACCCAAATATTAAGGTTTTCGGTTTAATCTAAAAGAAGAGATGTAACCATTCTTATAATCCGG</canonical_amplicon>
		<polymorphic_amplicon>TTTGATACCGTACACCTTAAAAAATGAACGGTGAATCATAGAAACTCCCATCAGTCATATTCTTCTTTTTGAATCTAATCACTAGCGAATTCTAAAATTTTGTAAWCAACTGATAAGCGGTATCAGAGGTTTGCAATGTTTCATTCCGAAAAAGTTCACATCCGCCGATATGAAATTATATCGAGTTACCCAAATATTAAGGTTTTCGGTTTAATCTAAAAGAAGAGATGTAACCATTCTTATAATCCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13395</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>175027</contig_pos>
        <strand>+</strand>
        <context>TAATCACTAG[C/T]GAATTCTAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATAGAAACTCCCATCAGTCATATTCTTCTTTTTGAATCTAATCACTAG</left_flank>
        <right_flank>GAATTCTAAAATTTTGTAAACAACTGATAAGCGGTATCAGAGGTTTGCAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACCACAACATAGGAGCTCCATCCCTGTGGGACATTCATCTGAAATACTCCAGATAAAAATTATCATTCTCTTGTCAACCGGGATTGAATCAATTTCGTATCAATTTGTAAGTTATGAGAATGATAAAATCGGTAAAAGAAAGACAACTTGTAACCTGATAAACGCAGTTGTAACCATTAGAAAGCAACACTGGATTCCAGTGATCTGGGTACCAAAATTCATTGGAAATGCCATTCGGTGGATTTAATGTTCCGGGACAAGCTCAAAATTCAAATCGATTTTGTTGGAATAATGTAAAGTAGTTACTCACCTGGACCATCAGCTAAAACTCTATTTGAAAGTGCAAGAAATAGAAATGTGCCAATGTAAAATCCCATTTTTTAACGGCGAATGAAACGTTGTGTACACTTTCTTTGATACCGTACACCTTAAAAAATGAACGGTGAATCATAGAAACTCCCATCAGTCATATTCTTCTTTTTGAATCTAATCACTAGCGAATTCTAAAATTTTGTAAACAACTGATAAGCGGTATCAGAGGTTTGCAATGTTTCATTCCGAAAAAGTTCACATCCGCCGATATGAAATTATATCGAGTTACCCAAATATTAAGGTTTTCGGTTTAATCTAAAAGAAGAGATGTAACCATTCTTATAATCCGGGCTTTTCCCGGTTCTTCGCGGGCCCCGCCAAAGTTTCTTTCAGAATCAAAAGATTAACTAAATTGGATATGATAAAGCTTGACGAGTACTACAAAGCAGGCCTTAAAATGGCCTTTTTCGGACGTGCCGATCACAGACTCTTCTGTTATCAATAGTTGTAGACTAATGATAAGAGATAATTAATTTGGAATAATTTGTTCTGAAGATGATTGATTAAAATTGATAGACAGAATTTAATTAATCTCAGAATTACAGAATCCTAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCCGGATCTCAGAATCTCAGATTCTCAGG</canonical>
            <polymorphic>TCACCACAACATAGGAGCTCCATCCCTGTGGGACATTCATCTGAAATACTCCAGATAAAAATTATCATTCTCTTGTCAACCGGGATTGAATCAATTTCGTATCAATTTGTAAGTTATGAGAATGATAAAATCGGTAAAAGAAAGACAACTTGTAACCTGATAAACGCAGTTGTAACCATTAGAAAGCAACACTGGATTCCAGTGATCTGGGTACCAAAATTCATTGGAAATGCCATTCGGTGGATTTAATGTTCCGGGACAAGCTCAAAATTCAAATCGATTTTGTTGGAATAATGTAAAGTAGTTACTCACCTGGACCATCAGCTAAAACTCTATTTGAAAGTGCAAGAAATAGAAATGTGCCAATGTAAAATCCCATTTTTTAACGGCGAATGAAACGTTGTGTACACTTTCTTTGATACCGTACACCTTAAAAAATGAACGGTGAATCATAGAAACTCCCATCAGTCATATTCTTCTTTTTGAATCTAATCACTAGYGAATTCTAAAATTTTGTAAACAACTGATAAGCGGTATCAGAGGTTTGCAATGTTTCATTCCGAAAAAGTTCACATCCGCCGATATGAAATTATATCGAGTTACCCAAATATTAAGGTTTTCGGTTTAATCTAAAAGAAGAGATGTAACCATTCTTATAATCCGGGCTTTTCCCGGTTCTTCGCGGGCCCCGCCAAAGTTTCTTTCAGAATCAAAAGATTAACTAAATTGGATATGATAAAGCTTGACGAGTACTACAAAGCAGGCCTTAAAATGGCCTTTTTCGGACGTGCCGATCACAGACTCTTCTGTTATCAATAGTTGTAGACTAATGATAAGAGATAATTAATTTGGAATAATTTGTTCTGAAGATGATTGATTAAAATTGATAGACAGAATTTAATTAATCTCAGAATTACAGAATCCTAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCCGGATCTCAGAATCTCAGATTCTCAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGATACCGTACACCTTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCGGATTATAAGAATGGTTACAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGATACCGTACACCTTAAAAAATGAACGGTGAATCATAGAAACTCCCATCAGTCATATTCTTCTTTTTGAATCTAATCACTAGCGAATTCTAAAATTTTGTAAACAACTGATAAGCGGTATCAGAGGTTTGCAATGTTTCATTCCGAAAAAGTTCACATCCGCCGATATGAAATTATATCGAGTTACCCAAATATTAAGGTTTTCGGTTTAATCTAAAAGAAGAGATGTAACCATTCTTATAATCCGG</canonical_amplicon>
		<polymorphic_amplicon>TTTGATACCGTACACCTTAAAAAATGAACGGTGAATCATAGAAACTCCCATCAGTCATATTCTTCTTTTTGAATCTAATCACTAGYGAATTCTAAAATTTTGTAAACAACTGATAAGCGGTATCAGAGGTTTGCAATGTTTCATTCCGAAAAAGTTCACATCCGCCGATATGAAATTATATCGAGTTACCCAAATATTAAGGTTTTCGGTTTAATCTAAAAGAAGAGATGTAACCATTCTTATAATCCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13396</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>175002</contig_pos>
        <strand>+</strand>
        <context>TCAGTCATAT[G/T]CTTCTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TACACCTTAAAAAATGAACGGTGAATCATAGAAACTCCCATCAGTCATAT</left_flank>
        <right_flank>CTTCTTTTTGAATCTAATCACTAGCGAATTCTAAAATTTTGTAAACAACT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAAGGTTAGAAGTTGGAATCGCAGTCACCACAACATAGGAGCTCCATCCCTGTGGGACATTCATCTGAAATACTCCAGATAAAAATTATCATTCTCTTGTCAACCGGGATTGAATCAATTTCGTATCAATTTGTAAGTTATGAGAATGATAAAATCGGTAAAAGAAAGACAACTTGTAACCTGATAAACGCAGTTGTAACCATTAGAAAGCAACACTGGATTCCAGTGATCTGGGTACCAAAATTCATTGGAAATGCCATTCGGTGGATTTAATGTTCCGGGACAAGCTCAAAATTCAAATCGATTTTGTTGGAATAATGTAAAGTAGTTACTCACCTGGACCATCAGCTAAAACTCTATTTGAAAGTGCAAGAAATAGAAATGTGCCAATGTAAAATCCCATTTTTTAACGGCGAATGAAACGTTGTGTACACTTTCTTTGATACCGTACACCTTAAAAAATGAACGGTGAATCATAGAAACTCCCATCAGTCATATTCTTCTTTTTGAATCTAATCACTAGCGAATTCTAAAATTTTGTAAACAACTGATAAGCGGTATCAGAGGTTTGCAATGTTTCATTCCGAAAAAGTTCACATCCGCCGATATGAAATTATATCGAGTTACCCAAATATTAAGGTTTTCGGTTTAATCTAAAAGAAGAGATGTAACCATTCTTATAATCCGGGCTTTTCCCGGTTCTTCGCGGGCCCCGCCAAAGTTTCTTTCAGAATCAAAAGATTAACTAAATTGGATATGATAAAGCTTGACGAGTACTACAAAGCAGGCCTTAAAATGGCCTTTTTCGGACGTGCCGATCACAGACTCTTCTGTTATCAATAGTTGTAGACTAATGATAAGAGATAATTAATTTGGAATAATTTGTTCTGAAGATGATTGATTAAAATTGATAGACAGAATTTAATTAATCTCAGAATTACAGAATCCTAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCCG</canonical>
            <polymorphic>GTAAGGTTAGAAGTTGGAATCGCAGTCACCACAACATAGGAGCTCCATCCCTGTGGGACATTCATCTGAAATACTCCAGATAAAAATTATCATTCTCTTGTCAACCGGGATTGAATCAATTTCGTATCAATTTGTAAGTTATGAGAATGATAAAATCGGTAAAAGAAAGACAACTTGTAACCTGATAAACGCAGTTGTAACCATTAGAAAGCAACACTGGATTCCAGTGATCTGGGTACCAAAATTCATTGGAAATGCCATTCGGTGGATTTAATGTTCCGGGACAAGCTCAAAATTCAAATCGATTTTGTTGGAATAATGTAAAGTAGTTACTCACCTGGACCATCAGCTAAAACTCTATTTGAAAGTGCAAGAAATAGAAATGTGCCAATGTAAAATCCCATTTTTTAACGGCGAATGAAACGTTGTGTACACTTTCTTTGATACCGTACACCTTAAAAAATGAACGGTGAATCATAGAAACTCCCATCAGTCATATKCTTCTTTTTGAATCTAATCACTAGCGAATTCTAAAATTTTGTAAACAACTGATAAGCGGTATCAGAGGTTTGCAATGTTTCATTCCGAAAAAGTTCACATCCGCCGATATGAAATTATATCGAGTTACCCAAATATTAAGGTTTTCGGTTTAATCTAAAAGAAGAGATGTAACCATTCTTATAATCCGGGCTTTTCCCGGTTCTTCGCGGGCCCCGCCAAAGTTTCTTTCAGAATCAAAAGATTAACTAAATTGGATATGATAAAGCTTGACGAGTACTACAAAGCAGGCCTTAAAATGGCCTTTTTCGGACGTGCCGATCACAGACTCTTCTGTTATCAATAGTTGTAGACTAATGATAAGAGATAATTAATTTGGAATAATTTGTTCTGAAGATGATTGATTAAAATTGATAGACAGAATTTAATTAATCTCAGAATTACAGAATCCTAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGATACCGTACACCTTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCGGATTATAAGAATGGTTACAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGATACCGTACACCTTAAAAAATGAACGGTGAATCATAGAAACTCCCATCAGTCATATTCTTCTTTTTGAATCTAATCACTAGCGAATTCTAAAATTTTGTAAACAACTGATAAGCGGTATCAGAGGTTTGCAATGTTTCATTCCGAAAAAGTTCACATCCGCCGATATGAAATTATATCGAGTTACCCAAATATTAAGGTTTTCGGTTTAATCTAAAAGAAGAGATGTAACCATTCTTATAATCCGG</canonical_amplicon>
		<polymorphic_amplicon>TTTGATACCGTACACCTTAAAAAATGAACGGTGAATCATAGAAACTCCCATCAGTCATATKCTTCTTTTTGAATCTAATCACTAGCGAATTCTAAAATTTTGTAAACAACTGATAAGCGGTATCAGAGGTTTGCAATGTTTCATTCCGAAAAAGTTCACATCCGCCGATATGAAATTATATCGAGTTACCCAAATATTAAGGTTTTCGGTTTAATCTAAAAGAAGAGATGTAACCATTCTTATAATCCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13397</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>174984</contig_pos>
        <strand>+</strand>
        <context>GAATCATAGA[A/C]ACTCCCATCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACACTTTCTTTGATACCGTACACCTTAAAAAATGAACGGTGAATCATAGA</left_flank>
        <right_flank>ACTCCCATCAGTCATATTCTTCTTTTTGAATCTAATCACTAGCGAATTCT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTAGAATAGGAGAATTGGTAAGGTTAGAAGTTGGAATCGCAGTCACCACAACATAGGAGCTCCATCCCTGTGGGACATTCATCTGAAATACTCCAGATAAAAATTATCATTCTCTTGTCAACCGGGATTGAATCAATTTCGTATCAATTTGTAAGTTATGAGAATGATAAAATCGGTAAAAGAAAGACAACTTGTAACCTGATAAACGCAGTTGTAACCATTAGAAAGCAACACTGGATTCCAGTGATCTGGGTACCAAAATTCATTGGAAATGCCATTCGGTGGATTTAATGTTCCGGGACAAGCTCAAAATTCAAATCGATTTTGTTGGAATAATGTAAAGTAGTTACTCACCTGGACCATCAGCTAAAACTCTATTTGAAAGTGCAAGAAATAGAAATGTGCCAATGTAAAATCCCATTTTTTAACGGCGAATGAAACGTTGTGTACACTTTCTTTGATACCGTACACCTTAAAAAATGAACGGTGAATCATAGAAACTCCCATCAGTCATATTCTTCTTTTTGAATCTAATCACTAGCGAATTCTAAAATTTTGTAAACAACTGATAAGCGGTATCAGAGGTTTGCAATGTTTCATTCCGAAAAAGTTCACATCCGCCGATATGAAATTATATCGAGTTACCCAAATATTAAGGTTTTCGGTTTAATCTAAAAGAAGAGATGTAACCATTCTTATAATCCGGGCTTTTCCCGGTTCTTCGCGGGCCCCGCCAAAGTTTCTTTCAGAATCAAAAGATTAACTAAATTGGATATGATAAAGCTTGACGAGTACTACAAAGCAGGCCTTAAAATGGCCTTTTTCGGACGTGCCGATCACAGACTCTTCTGTTATCAATAGTTGTAGACTAATGATAAGAGATAATTAATTTGGAATAATTTGTTCTGAAGATGATTGATTAAAATTGATAGACAGAATTTAATTAATCTCAGAATTACAGAATCCTAGAATCTCAGAATCTCAGAATCTCAGAATCTC</canonical>
            <polymorphic>TGTAGAATAGGAGAATTGGTAAGGTTAGAAGTTGGAATCGCAGTCACCACAACATAGGAGCTCCATCCCTGTGGGACATTCATCTGAAATACTCCAGATAAAAATTATCATTCTCTTGTCAACCGGGATTGAATCAATTTCGTATCAATTTGTAAGTTATGAGAATGATAAAATCGGTAAAAGAAAGACAACTTGTAACCTGATAAACGCAGTTGTAACCATTAGAAAGCAACACTGGATTCCAGTGATCTGGGTACCAAAATTCATTGGAAATGCCATTCGGTGGATTTAATGTTCCGGGACAAGCTCAAAATTCAAATCGATTTTGTTGGAATAATGTAAAGTAGTTACTCACCTGGACCATCAGCTAAAACTCTATTTGAAAGTGCAAGAAATAGAAATGTGCCAATGTAAAATCCCATTTTTTAACGGCGAATGAAACGTTGTGTACACTTTCTTTGATACCGTACACCTTAAAAAATGAACGGTGAATCATAGAMACTCCCATCAGTCATATTCTTCTTTTTGAATCTAATCACTAGCGAATTCTAAAATTTTGTAAACAACTGATAAGCGGTATCAGAGGTTTGCAATGTTTCATTCCGAAAAAGTTCACATCCGCCGATATGAAATTATATCGAGTTACCCAAATATTAAGGTTTTCGGTTTAATCTAAAAGAAGAGATGTAACCATTCTTATAATCCGGGCTTTTCCCGGTTCTTCGCGGGCCCCGCCAAAGTTTCTTTCAGAATCAAAAGATTAACTAAATTGGATATGATAAAGCTTGACGAGTACTACAAAGCAGGCCTTAAAATGGCCTTTTTCGGACGTGCCGATCACAGACTCTTCTGTTATCAATAGTTGTAGACTAATGATAAGAGATAATTAATTTGGAATAATTTGTTCTGAAGATGATTGATTAAAATTGATAGACAGAATTTAATTAATCTCAGAATTACAGAATCCTAGAATCTCAGAATCTCAGAATCTCAGAATCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAAATGTGCCAATGTAAAATC</pcr_primer_p1>
		<pcr_primer_p2>TTGGGTAACTCGATATAATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TAGAAATGTGCCAATGTAAAATCCCATTTTTTAACGGCGAATGAAACGTTGTGTACACTTTCTTTGATACCGTACACCTTAAAAAATGAACGGTGAATCATAGAAACTCCCATCAGTCATATTCTTCTTTTTGAATCTAATCACTAGCGAATTCTAAAATTTTGTAAACAACTGATAAGCGGTATCAGAGGTTTGCAATGTTTCATTCCGAAAAAGTTCACATCCGCCGATATGAAATTATATCGAGTTACCCAA</canonical_amplicon>
		<polymorphic_amplicon>TAGAAATGTGCCAATGTAAAATCCCATTTTTTAACGGCGAATGAAACGTTGTGTACACTTTCTTTGATACCGTACACCTTAAAAAATGAACGGTGAATCATAGAMACTCCCATCAGTCATATTCTTCTTTTTGAATCTAATCACTAGCGAATTCTAAAATTTTGTAAACAACTGATAAGCGGTATCAGAGGTTTGCAATGTTTCATTCCGAAAAAGTTCACATCCGCCGATATGAAATTATATCGAGTTACCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13398</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>212720</contig_pos>
        <strand></strand>
        <context>tcaaagtGAT[C/T]AGTAGCTAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTTTAAATAGCTTTTAAAGGAACTGAGATAATTGAGCTCAAAGTGAT</left_flank>
        <right_flank>AGTAGCTAGATTCTAGATTTTCTTGCAAAACTTCTAGAGTCTTCTGAGCT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACCATCGGTCGTCAGGCGCCTTCGCGCCCCCGTAGCCCAGTCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCATGAGTTCAACCCCTCATGGGGGTTCTCTATGCAAAATATCAGGAAAACTTTTTTTTTTGGTGTCTGGCCTCCTTTAAAGTTTCTAAAGAGCTATGGAAATTTTCGACCAATCAACACTAGTGGGATCATCTCAGGAACTACAGTACCCATTTTTGCAAGTATTCACGTTTTCAGCATTTCAAGTAGTATCATCTTGTAGCCCTTAAGTTTTTCTACCGTATCCAATTTTTGTAGACCAAGAACGTTGCTCTTAAAAGTCGCCACTCTACACGTTGACTTTGAGCTCATTTATCTCGGTTACTGTAGGAGCCATCAAAAATTTTCAGACTACAAAAATATTGAGAATATTATGGGCAACATTTTGTCAGTTGACAAATTTTAAATAGCTTTTAAAGGAACTGAGATAATTGAGCTCAAAGTGATCAGTAGCTAGATTCTAGATTTTCTTGCAAAACTTCTAGAGTCTTCTGAGCTACCGTACTCCCACCTCTGCCAAAAGCAACTCCAGAAACTACCGTACCTCCACCGAGGACTTTTGCATCATCGTCACGGCACATTTGATTCCAAACTATGTATTTAGCATTTGCACTTTTGTCCTTTGTTCCTGCAGTAGCAGACAGGTGACTCATTGGCACTGTGCCAGCCAATGTTTTCGAATCGTTTCGAAAAGAAATTGGCGCAAAAAAAGAGAGGGAGCGAGAGACGATTGTCATTTTCCTTTGCGACACATTGTGTCACATTTCATGGCCATATGTGCCCTTTTGCTAGGGAGGTGTGACGTCACTGTCAGTGGTGCCGGTCGGGGTGCCAGGTTAAAAAGTGCAATTAATGGGTGTGGGAGGCCGAGGAATGGTGCAAATGAGGACTACGTCATCAGGAGGGAGGGACAAGTAGCCGGAATATTCGGGAGATTGGAGGGTGGAA</canonical>
            <polymorphic>GACCATCGGTCGTCAGGCGCCTTCGCGCCCCCGTAGCCCAGTCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCATGAGTTCAACCCCTCATGGGGGTTCTCTATGCAAAATATCAGGAAAACTTTTTTTTTTGGTGTCTGGCCTCCTTTAAAGTTTCTAAAGAGCTATGGAAATTTTCGACCAATCAACACTAGTGGGATCATCTCAGGAACTACAGTACCCATTTTTGCAAGTATTCACGTTTTCAGCATTTCAAGTAGTATCATCTTGTAGCCCTTAAGTTTTTCTACCGTATCCAATTTTTGTAGACCAAGAACGTTGCTCTTAAAAGTCGCCACTCTACACGTTGACTTTGAGCTCATTTATCTCGGTTACTGTAGGAGCCATCAAAAATTTTCAGACTACAAAAATATTGAGAATATTATGGGCAACATTTTGTCAGTTGACAAATTTTAAATAGCTTTTAAAGGAACTGAGATAATTGAGCTCAAAGTGATYAGTAGCTAGATTCTAGATTTTCTTGCAAAACTTCTAGAGTCTTCTGAGCTACCGTACTCCCACCTCTGCCAAAAGCAACTCCAGAAACTACCGTACCTCCACCGAGGACTTTTGCATCATCGTCACGGCACATTTGATTCCAAACTATGTATTTAGCATTTGCACTTTTGTCCTTTGTTCCTGCAGTAGCAGACAGGTGACTCATTGGCACTGTGCCAGCCAATGTTTTCGAATCGTTTCGAAAAGAAATTGGCGCAAAAAAAGAGAGGGAGCGAGAGACGATTGTCATTTTCCTTTGCGACACATTGTGTCACATTTCATGGCCATATGTGCCCTTTTGCTAGGGAGGTGTGACGTCACTGTCAGTGGTGCCGGTCGGGGTGCCAGGTTAAAAAGTGCAATTAATGGGTGTGGGAGGCCGAGGAATGGTGCAAATGAGGACTACGTCATCAGGAGGGAGGGACAAGTAGCCGGAATATTCGGGAGATTGGAGGGTGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>504 297 199</canonical_bands>
                <polymorphic_bands>801 199</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGCAAGTATTCACGTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTACGGTAGCTCAGAAGACTCTA</pcr_primer_p2>
		<pcr_amplicon_size>331</pcr_amplicon_size>
		<canonical_amplicon>TTTTGCAAGTATTCACGTTTTCAGCATTTCAAGTAGTATCATCTTGTAGCCCTTAAGTTTTTCTACCGTATCCAATTTTTGTAGACCAAGAACGTTGCTCTTAAAAGTCGCCACTCTACACGTTGACTTTGAGCTCATTTATCTCGGTTACTGTAGGAGCCATCAAAAATTTTCAGACTACAAAAATATTGAGAATATTATGGGCAACATTTTGTCAGTTGACAAATTTTAAATAGCTTTTAAAGGAACTGAGATAATTGAGCTCAAAGTGATCAGTAGCTAGATTCTAGATTTTCTTGCAAAACTTCTAGAGTCTTCTGAGCTACCGTAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGCAAGTATTCACGTTTTCAGCATTTCAAGTAGTATCATCTTGTAGCCCTTAAGTTTTTCTACCGTATCCAATTTTTGTAGACCAAGAACGTTGCTCTTAAAAGTCGCCACTCTACACGTTGACTTTGAGCTCATTTATCTCGGTTACTGTAGGAGCCATCAAAAATTTTCAGACTACAAAAATATTGAGAATATTATGGGCAACATTTTGTCAGTTGACAAATTTTAAATAGCTTTTAAAGGAACTGAGATAATTGAGCTCAAAGTGATYAGTAGCTAGATTCTAGATTTTCTTGCAAAACTTCTAGAGTCTTCTGAGCTACCGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13399</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>213011</contig_pos>
        <strand></strand>
        <context>GATTGTCATT[T/G]TCCTTTGCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GAAAAGAAATTGGCGCAAAAAAAGAGAGGGAGCGAGAGACGATTGTCATT</left_flank>
        <right_flank>TCCTTTGCGACACATTGTGTCACATTTCATGGCCATATGTGCCCTTTTGC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGTATCCAATTTTTGTAGACCAAGAACGTTGCTCTTAAAAGTCGCCACTCTACACGTTGACTTTGAGCTCATTTATCTCGGTTACTGTAGGAGCCATCAAAAATTTTCAGACTACAAAAATATTGAGAATATTATGGGCAACATTTTGTCAGTTGACAAATTTTAAATAGCTTTTAAAGGAACTGAGATAATTGAGCTCAAAGTGATCAGTAGCTAGATTCTAGATTTTCTTGCAAAACTTCTAGAGTCTTCTGAGCTACCGTACTCCCACCTCTGCCAAAAGCAACTCCAGAAACTACCGTACCTCCACCGAGGACTTTTGCATCATCGTCACGGCACATTTGATTCCAAACTATGTATTTAGCATTTGCACTTTTGTCCTTTGTTCCTGCAGTAGCAGACAGGTGACTCATTGGCACTGTGCCAGCCAATGTTTTCGAATCGTTTCGAAAAGAAATTGGCGCAAAAAAAGAGAGGGAGCGAGAGACGATTGTCATTTTCCTTTGCGACACATTGTGTCACATTTCATGGCCATATGTGCCCTTTTGCTAGGGAGGTGTGACGTCACTGTCAGTGGTGCCGGTCGGGGTGCCAGGTTAAAAAGTGCAATTAATGGGTGTGGGAGGCCGAGGAATGGTGCAAATGAGGACTACGTCATCAGGAGGGAGGGACAAGTAGCCGGAATATTCGGGAGATTGGAGGGTGGAATGAGGGATTGATTTCAGAATGCCAATCAACCCCGTCCATTTTGATACCAGATATCTCGGCTCCTGTGAGAGATATCAAAAAGATGTCAACTGACAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTGACCACTTTTTGATACCTTCTACGGGAATCAAGATAAATTGGCTCAAAGGTAAAAGTTATAGGAGTCATTGAATGATACTAGACTATTTACGGTATACTTGTAAATCGACCCATAACTCGGCTCAAACTTTGAATTTCAGTTTGAATAAAAAAGTAAAA</canonical>
            <polymorphic>CCGTATCCAATTTTTGTAGACCAAGAACGTTGCTCTTAAAAGTCGCCACTCTACACGTTGACTTTGAGCTCATTTATCTCGGTTACTGTAGGAGCCATCAAAAATTTTCAGACTACAAAAATATTGAGAATATTATGGGCAACATTTTGTCAGTTGACAAATTTTAAATAGCTTTTAAAGGAACTGAGATAATTGAGCTCAAAGTGATCAGTAGCTAGATTCTAGATTTTCTTGCAAAACTTCTAGAGTCTTCTGAGCTACCGTACTCCCACCTCTGCCAAAAGCAACTCCAGAAACTACCGTACCTCCACCGAGGACTTTTGCATCATCGTCACGGCACATTTGATTCCAAACTATGTATTTAGCATTTGCACTTTTGTCCTTTGTTCCTGCAGTAGCAGACAGGTGACTCATTGGCACTGTGCCAGCCAATGTTTTCGAATCGTTTCGAAAAGAAATTGGCGCAAAAAAAGAGAGGGAGCGAGAGACGATTGTCATTKTCCTTTGCGACACATTGTGTCACATTTCATGGCCATATGTGCCCTTTTGCTAGGGAGGTGTGACGTCACTGTCAGTGGTGCCGGTCGGGGTGCCAGGTTAAAAAGTGCAATTAATGGGTGTGGGAGGCCGAGGAATGGTGCAAATGAGGACTACGTCATCAGGAGGGAGGGACAAGTAGCCGGAATATTCGGGAGATTGGAGGGTGGAATGAGGGATTGATTTCAGAATGCCAATCAACCCCGTCCATTTTGATACCAGATATCTCGGCTCCTGTGAGAGATATCAAAAAGATGTCAACTGACAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTGACCACTTTTTGATACCTTCTACGGGAATCAAGATAAATTGGCTCAAAGGTAAAAGTTATAGGAGTCATTGAATGATACTAGACTATTTACGGTATACTTGTAAATCGACCCATAACTCGGCTCAAACTTTGAATTTCAGTTTGAATAAAAAAGTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGCACTTTTGTCCTTTG</pcr_primer_p1>
		<pcr_primer_p2>CATTAATTGCACTTTTTAACCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTGCACTTTTGTCCTTTGTTCCTGCAGTAGCAGACAGGTGACTCATTGGCACTGTGCCAGCCAATGTTTTCGAATCGTTTCGAAAAGAAATTGGCGCAAAAAAAGAGAGGGAGCGAGAGACGATTGTCATTTTCCTTTGCGACACATTGTGTCACATTTCATGGCCATATGTGCCCTTTTGCTAGGGAGGTGTGACGTCACTGTCAGTGGTGCCGGTCGGGGTGCCAGGTTAAAAAGTGCAATTAATG</canonical_amplicon>
		<polymorphic_amplicon>ATTTGCACTTTTGTCCTTTGTTCCTGCAGTAGCAGACAGGTGACTCATTGGCACTGTGCCAGCCAATGTTTTCGAATCGTTTCGAAAAGAAATTGGCGCAAAAAAAGAGAGGGAGCGAGAGACGATTGTCATTKTCCTTTGCGACACATTGTGTCACATTTCATGGCCATATGTGCCCTTTTGCTAGGGAGGTGTGACGTCACTGTCAGTGGTGCCGGTCGGGGTGCCAGGTTAAAAAGTGCAATTAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13400</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>213055</contig_pos>
        <strand></strand>
        <context>CATATGTGCC[C/T]TTTTGCTAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCATTTTCCTTTGCGACACATTGTGTCACATTTCATGGCCATATGTGCC</left_flank>
        <right_flank>TTTTGCTAGGGAGGTGTGACGTCACTGTCAGTGGTGCCGGTCGGGGTGCC</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCACTCTACACGTTGACTTTGAGCTCATTTATCTCGGTTACTGTAGGAGCCATCAAAAATTTTCAGACTACAAAAATATTGAGAATATTATGGGCAACATTTTGTCAGTTGACAAATTTTAAATAGCTTTTAAAGGAACTGAGATAATTGAGCTCAAAGTGATCAGTAGCTAGATTCTAGATTTTCTTGCAAAACTTCTAGAGTCTTCTGAGCTACCGTACTCCCACCTCTGCCAAAAGCAACTCCAGAAACTACCGTACCTCCACCGAGGACTTTTGCATCATCGTCACGGCACATTTGATTCCAAACTATGTATTTAGCATTTGCACTTTTGTCCTTTGTTCCTGCAGTAGCAGACAGGTGACTCATTGGCACTGTGCCAGCCAATGTTTTCGAATCGTTTCGAAAAGAAATTGGCGCAAAAAAAGAGAGGGAGCGAGAGACGATTGTCATTTTCCTTTGCGACACATTGTGTCACATTTCATGGCCATATGTGCCCTTTTGCTAGGGAGGTGTGACGTCACTGTCAGTGGTGCCGGTCGGGGTGCCAGGTTAAAAAGTGCAATTAATGGGTGTGGGAGGCCGAGGAATGGTGCAAATGAGGACTACGTCATCAGGAGGGAGGGACAAGTAGCCGGAATATTCGGGAGATTGGAGGGTGGAATGAGGGATTGATTTCAGAATGCCAATCAACCCCGTCCATTTTGATACCAGATATCTCGGCTCCTGTGAGAGATATCAAAAAGATGTCAACTGACAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTGACCACTTTTTGATACCTTCTACGGGAATCAAGATAAATTGGCTCAAAGGTAAAAGTTATAGGAGTCATTGAATGATACTAGACTATTTACGGTATACTTGTAAATCGACCCATAACTCGGCTCAAACTTTGAATTTCAGTTTGAATAAAAAAGTAAAATATAGAAATTGGAAATCTCTACAAAATGATATTAAATTCGACTA</canonical>
            <polymorphic>GCCACTCTACACGTTGACTTTGAGCTCATTTATCTCGGTTACTGTAGGAGCCATCAAAAATTTTCAGACTACAAAAATATTGAGAATATTATGGGCAACATTTTGTCAGTTGACAAATTTTAAATAGCTTTTAAAGGAACTGAGATAATTGAGCTCAAAGTGATCAGTAGCTAGATTCTAGATTTTCTTGCAAAACTTCTAGAGTCTTCTGAGCTACCGTACTCCCACCTCTGCCAAAAGCAACTCCAGAAACTACCGTACCTCCACCGAGGACTTTTGCATCATCGTCACGGCACATTTGATTCCAAACTATGTATTTAGCATTTGCACTTTTGTCCTTTGTTCCTGCAGTAGCAGACAGGTGACTCATTGGCACTGTGCCAGCCAATGTTTTCGAATCGTTTCGAAAAGAAATTGGCGCAAAAAAAGAGAGGGAGCGAGAGACGATTGTCATTTTCCTTTGCGACACATTGTGTCACATTTCATGGCCATATGTGCCYTTTTGCTAGGGAGGTGTGACGTCACTGTCAGTGGTGCCGGTCGGGGTGCCAGGTTAAAAAGTGCAATTAATGGGTGTGGGAGGCCGAGGAATGGTGCAAATGAGGACTACGTCATCAGGAGGGAGGGACAAGTAGCCGGAATATTCGGGAGATTGGAGGGTGGAATGAGGGATTGATTTCAGAATGCCAATCAACCCCGTCCATTTTGATACCAGATATCTCGGCTCCTGTGAGAGATATCAAAAAGATGTCAACTGACAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTGACCACTTTTTGATACCTTCTACGGGAATCAAGATAAATTGGCTCAAAGGTAAAAGTTATAGGAGTCATTGAATGATACTAGACTATTTACGGTATACTTGTAAATCGACCCATAACTCGGCTCAAACTTTGAATTTCAGTTTGAATAAAAAAGTAAAATATAGAAATTGGAAATCTCTACAAAATGATATTAAATTCGACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 344 129 26</canonical_bands>
                <polymorphic_bands>845 129 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTGCACTTTTGTCCTTTG</pcr_primer_p1>
		<pcr_primer_p2>CATTAATTGCACTTTTTAACCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTGCACTTTTGTCCTTTGTTCCTGCAGTAGCAGACAGGTGACTCATTGGCACTGTGCCAGCCAATGTTTTCGAATCGTTTCGAAAAGAAATTGGCGCAAAAAAAGAGAGGGAGCGAGAGACGATTGTCATTTTCCTTTGCGACACATTGTGTCACATTTCATGGCCATATGTGCCCTTTTGCTAGGGAGGTGTGACGTCACTGTCAGTGGTGCCGGTCGGGGTGCCAGGTTAAAAAGTGCAATTAATG</canonical_amplicon>
		<polymorphic_amplicon>ATTTGCACTTTTGTCCTTTGTTCCTGCAGTAGCAGACAGGTGACTCATTGGCACTGTGCCAGCCAATGTTTTCGAATCGTTTCGAAAAGAAATTGGCGCAAAAAAAGAGAGGGAGCGAGAGACGATTGTCATTTTCCTTTGCGACACATTGTGTCACATTTCATGGCCATATGTGCCYTTTTGCTAGGGAGGTGTGACGTCACTGTCAGTGGTGCCGGTCGGGGTGCCAGGTTAAAAAGTGCAATTAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13403</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>215001</contig_pos>
        <strand>+</strand>
        <context>TGAATTTTTT[C/G]GAAATTTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTATAATGAATTTGGGCCTTGAAAAAGAGCCAAAAAAGTGAATTTTTT</left_flank>
        <right_flank>GAAATTTTCTACATGAACATTTTAATAATTTAAGTCAAAAAAAATCTGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGTCTCAAAGTTGAGGGGCCCTTTTATTACAGGTTTTTCGCCACAGTAGAATTTTGAGATTTTGAAAATTCTTAAACTTTTTCGTACTACAGTAATGCCTTCCCTTCAAAACAATGTTTAAAAAATACACATCAAAATCCACATTTTTATTGCTATAAATAAGTCAGAAAACTACTATATTTTTGAATGAATAAGATAAATCCAAAAATAGGAAGAAGAATTATTTTTCAGAGCCAAATCTAGCACAAAAACCATAAATATGGTGGGCGGGGGGGGGGGGACATAAAAGAAGAGAGGAGGAGAAAAAAGGGGGAAAGCTGAATGTGCGCTCTATTGATAACTACAGAGGGGAGTCCAATAGAGCGCGTTTGCCGAAAAAAAAATCGAATAATCAGGGCTTAAAATTGGAGGAAATTGAGTGGAGAAAAATAAATAAAAAAATTACATTTTTATAATGAATTTGGGCCTTGAAAAAGAGCCAAAAAAGTGAATTTTTTGGAAATTTTCTACATGAACATTTTAATAATTTAAGTCAAAAAAAATCTGGAATTTTCTAGGATTCTGGAATTTTCCAGAATTTTTTCTAGTACAAATTCGAGAGATTCTCGATTTTCTGAAGGAGTGTCGAGACACGATACTCGGGTTCACACTGTCGTGCCGATTCGATGAGCTCCAGAAGATGTTTGATGCCGACGCCGAATCTGAAATTTTGTCAAAAAAGTATAAATTGCAAAAGAAATCTGAATGTGAAAAACAAATATTCTGAAATTTTGAGATTCTGAGATTCTGGAATTTAGGGATCTTGAATTTCTGAAAATCTGAATTTCTGGAATTCTGAATTTCAGAAATTTTCGAGATTCTGAGATTCCAAGATTATGAGACTCTGAGGATCTGAAAATCCGAGATTCCAAAATTCTGGGATTCTATTTTGAGATTTTTAGACATTCAGATTTTCAGATTCCGAATTTCTGAAATTCTGAAAATCCGAGATTCTAAAA</canonical>
            <polymorphic>ATTGTCTCAAAGTTGAGGGGCCCTTTTATTACAGGTTTTTCGCCACAGTAGAATTTTGAGATTTTGAAAATTCTTAAACTTTTTCGTACTACAGTAATGCCTTCCCTTCAAAACAATGTTTAAAAAATACACATCAAAATCCACATTTTTATTGCTATAAATAAGTCAGAAAACTACTATATTTTTGAATGAATAAGATAAATCCAAAAATAGGAAGAAGAATTATTTTTCAGAGCCAAATCTAGCACAAAAACCATAAATATGGTGGGCGGGGGGGGGGGGACATAAAAGAAGAGAGGAGGAGAAAAAAGGGGGAAAGCTGAATGTGCGCTCTATTGATAACTACAGAGGGGAGTCCAATAGAGCGCGTTTGCCGAAAAAAAAATCGAATAATCAGGGCTTAAAATTGGAGGAAATTGAGTGGAGAAAAATAAATAAAAAAATTACATTTTTATAATGAATTTGGGCCTTGAAAAAGAGCCAAAAAAGTGAATTTTTTSGAAATTTTCTACATGAACATTTTAATAATTTAAGTCAAAAAAAATCTGGAATTTTCTAGGATTCTGGAATTTTCCAGAATTTTTTCTAGTACAAATTCGAGAGATTCTCGATTTTCTGAAGGAGTGTCGAGACACGATACTCGGGTTCACACTGTCGTGCCGATTCGATGAGCTCCAGAAGATGTTTGATGCCGACGCCGAATCTGAAATTTTGTCAAAAAAGTATAAATTGCAAAAGAAATCTGAATGTGAAAAACAAATATTCTGAAATTTTGAGATTCTGAGATTCTGGAATTTAGGGATCTTGAATTTCTGAAAATCTGAATTTCTGGAATTCTGAATTTCAGAAATTTTCGAGATTCTGAGATTCCAAGATTATGAGACTCTGAGGATCTGAAAATCCGAGATTCCAAAATTCTGGGATTCTATTTTGAGATTTTTAGACATTCAGATTTTCAGATTCCGAATTTCTGAAATTCTGAAAATCCGAGATTCTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTGCGCTCTATTGATAACTAC</pcr_primer_p1>
		<pcr_primer_p2>TGGAAAATTCCAGAATCCTA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ATGTGCGCTCTATTGATAACTACAGAGGGGAGTCCAATAGAGCGCGTTTGCCGAAAAAAAAATCGAATAATCAGGGCTTAAAATTGGAGGAAATTGAGTGGAGAAAAATAAATAAAAAAATTACATTTTTATAATGAATTTGGGCCTTGAAAAAGAGCCAAAAAAGTGAATTTTTTGGAAATTTTCTACATGAACATTTTAATAATTTAAGTCAAAAAAAATCTGGAATTTTCTAGGATTCTGGAATTTTCCA</canonical_amplicon>
		<polymorphic_amplicon>ATGTGCGCTCTATTGATAACTACAGAGGGGAGTCCAATAGAGCGCGTTTGCCGAAAAAAAAATCGAATAATCAGGGCTTAAAATTGGAGGAAATTGAGTGGAGAAAAATAAATAAAAAAATTACATTTTTATAATGAATTTGGGCCTTGAAAAAGAGCCAAAAAAGTGAATTTTTTSGAAATTTTCTACATGAACATTTTAATAATTTAAGTCAAAAAAAATCTGGAATTTTCTAGGATTCTGGAATTTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13436</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>226951</contig_pos>
        <strand>+</strand>
        <context>ATTCCGGGGG[A/G]AAAAACCGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGGTCAATTTTTCTCAAATTTTCTATTAAAATGAGCCTAATTCCGGGGG</left_flank>
        <right_flank>AAAAACCGATTTTAGCTAATTTTAGGTCGATTTTTCTGGAATTTTCTACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTAATAATGAGCTAAATTCAATAATTTTTATCGATTTTCAGCTAATTTTCAGTCAATTTTTGGGCTAATTTGGCTTTAAATTGACTAAAATTCGGCAATTTTCCCTGAAAATTCCAGAAAAAATCCATGGAAAATGAGCCAAATTCGATGATTTTTAGCGATTTTGGCAAAATTCAGCTCATTTTTCCCGAAGAAAATTGGGAAAAAAAGCTAAAATCCATCAATTTCAGCCAATTGTGGGTCGATTTTTCTGGAATTTCCCATTAAAATTGGCTAAAATCGGTCATTTTTCCTTAAAATTCTAGAAAAATCCACTGAGAATGAGCTAAATTCGACAATTTTCATCGATTTTTAGCTCATTTTTCGTCGATTTTTTCAAAATTCAGCTCATTTTTCCCGAAGAAAATTGGGAAAAAAAAGCTGAAATCCATCAATTTCAGCCAATTGTGGGTCAATTTTTCTCAAATTTTCTATTAAAATGAGCCTAATTCCGGGGGAAAAAACCGATTTTAGCTAATTTTAGGTCGATTTTTCTGGAATTTTCTACTGATTTTAGCTAATTTCGGCCCCTTTTCACCCCCACTAACTTGATTTCATTCGCATTGAAATCGTCTCGATTCACATAGGCGAAATTGGCCAAAGTGTGCGCCTCGGATGGCGCCTTCCTGACATGGAACATTGTTCCGTCCGCGTAGCTGGCGATACTAGACGTCGGACGGTGATAATGGGTTTGAGATGATGATGGTGGAGCTGCCGGGCGATCTGAAGAGCGCGAAAAAAATTCATAAAAATCAATAAATTTGGGGTCAATTAGGGTGAGAGTGCGGCAATTTTCAGCGATTTTAAGCCCCAAAAAACCAGGATTTTTAGGAAGCATATTGTAGTTAGATTACGGTAGCATACGGTAAAAACTTTTGGAAAAATTTATCTTGAAAATCACGATGGTTTTCTTCCCGAAATCTCCTTTTTTTGCCTATTTTTAAGCCTGCATTCGCTTG</canonical>
            <polymorphic>GACTAATAATGAGCTAAATTCAATAATTTTTATCGATTTTCAGCTAATTTTCAGTCAATTTTTGGGCTAATTTGGCTTTAAATTGACTAAAATTCGGCAATTTTCCCTGAAAATTCCAGAAAAAATCCATGGAAAATGAGCCAAATTCGATGATTTTTAGCGATTTTGGCAAAATTCAGCTCATTTTTCCCGAAGAAAATTGGGAAAAAAAGCTAAAATCCATCAATTTCAGCCAATTGTGGGTCGATTTTTCTGGAATTTCCCATTAAAATTGGCTAAAATCGGTCATTTTTCCTTAAAATTCTAGAAAAATCCACTGAGAATGAGCTAAATTCGACAATTTTCATCGATTTTTAGCTCATTTTTCGTCGATTTTTTCAAAATTCAGCTCATTTTTCCCGAAGAAAATTGGGAAAAAAAAGCTGAAATCCATCAATTTCAGCCAATTGTGGGTCAATTTTTCTCAAATTTTCTATTAAAATGAGCCTAATTCCGGGGGRAAAAACCGATTTTAGCTAATTTTAGGTCGATTTTTCTGGAATTTTCTACTGATTTTAGCTAATTTCGGCCCCTTTTCACCCCCACTAACTTGATTTCATTCGCATTGAAATCGTCTCGATTCACATAGGCGAAATTGGCCAAAGTGTGCGCCTCGGATGGCGCCTTCCTGACATGGAACATTGTTCCGTCCGCGTAGCTGGCGATACTAGACGTCGGACGGTGATAATGGGTTTGAGATGATGATGGTGGAGCTGCCGGGCGATCTGAAGAGCGCGAAAAAAATTCATAAAAATCAATAAATTTGGGGTCAATTAGGGTGAGAGTGCGGCAATTTTCAGCGATTTTAAGCCCCAAAAAACCAGGATTTTTAGGAAGCATATTGTAGTTAGATTACGGTAGCATACGGTAAAAACTTTTGGAAAAATTTATCTTGAAAATCACGATGGTTTTCTTCCCGAAATCTCCTTTTTTTGCCTATTTTTAAGCCTGCATTCGCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAAAAATCCACTGAGAATGAG</pcr_primer_p1>
		<pcr_primer_p2>AAATCAGTAGAAAATTCCAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAGAAAAATCCACTGAGAATGAGCTAAATTCGACAATTTTCATCGATTTTTAGCTCATTTTTCGTCGATTTTTTCAAAATTCAGCTCATTTTTCCCGAAGAAAATTGGGAAAAAAAAGCTGAAATCCATCAATTTCAGCCAATTGTGGGTCAATTTTTCTCAAATTTTCTATTAAAATGAGCCTAATTCCGGGGGAAAAAACCGATTTTAGCTAATTTTAGGTCGATTTTTCTGGAATTTTCTACTGATTT</canonical_amplicon>
		<polymorphic_amplicon>TAGAAAAATCCACTGAGAATGAGCTAAATTCGACAATTTTCATCGATTTTTAGCTCATTTTTCGTCGATTTTTTCAAAATTCAGCTCATTTTTCCCGAAGAAAATTGGGAAAAAAAAGCTGAAATCCATCAATTTCAGCCAATTGTGGGTCAATTTTTCTCAAATTTTCTATTAAAATGAGCCTAATTCCGGGGGRAAAAACCGATTTTAGCTAATTTTAGGTCGATTTTTCTGGAATTTTCTACTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13437</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>232527</contig_pos>
        <strand>+</strand>
        <context>GCWTAGAATG[A/C]TCAAAAATCG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCATAGAATG</left_flank>
        <right_flank>TCAAAAATCGAGTTTTGGTTCATTTTTCCTGATTTTTGAACCACTTTTCA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAAGATATTTTGACGGATTTGATGTCAAATGATAGATCTCGACGAGGTCCATCTTAGCTATGCCACACGGGCCGGGCTNNNNNNNNNNNNATCCGTCAAAATATCTTGTTCTGAAGCCGAGTTATCTGCCGGCCCGCAATCTGCCCAGGACGGCCTGTTTGCAACTATGAAAATAGGAGATTTTGACTCTTAGAGTACGCTTTTCCTCTCGAAAAATCGTTGTTTTCCAGAGCCAACAATTCGGATGGGCCAGCCAATGGACTCAGCCGGCATCGGCGACGTCGCAAGGAGCTGGAGGGGTAAGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGGCTTTTTTCAGTGTTTTAGTGGCAAAAATTAGCCGAAAAGGACTGTTTTTGACTCGAGTTTTGCGAATTTTAGGCCTCTTTTCCCTTAGTTTGTTGTTGGGAAAATGGGAATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCATAGAATGCTCAAAAATCGAGTTTTGGTTCATTTTTCCTGATTTTTGAACCACTTTTCATGAATTTTGAACCATTTTTCACGAATTTTGGGTCGTTTTTCATGAATTTTGGACGATTTTTCAGTATTTAGGACCATTTTTCCTGAATTTCGGTTTATATTTCATGAATTTCTTACTATTTACTATTTTTCACAAATTTCGCACCATTCTTAATGAATTTTCGGCTTTTTTTAAAATGAATTTTGAACCATTTTAATGAATTCTGAGCCATTTTTCATAAATTTCGGGTAATGTTTCATAAACTTTAGACGATTTTTTGAAATTTAGCGGGAAAAAATCGGCAAAAAGAAAATTTCAGAAGACTTTTCTAGAACCATTTTCTTCATTCTGTGTTTTTTCTTCTGAGCCTTTCAAGCAAATCCAGGAAAAATGACCCGAATTTCATGAAAAATCGACCAAAATTCATGAAAAACGACTTAAAATTCGTGAAAAATCGACCAAATTCATGAA</canonical>
            <polymorphic>AACAAGATATTTTGACGGATTTGATGTCAAATGATAGATCTCGACGAGGTCCATCTTAGCTATGCCACACGGGCCGGGCTNNNNNNNNNNNNATCCGTCAAAATATCTTGTTCTGAAGCCGAGTTATCTGCCGGCCCGCAATCTGCCCAGGACGGCCTGTTTGCAACTATGAAAATAGGAGATTTTGACTCTTAGAGTACGCTTTTCCTCTCGAAAAATCGTTGTTTTCCAGAGCCAACAATTCGGATGGGCCAGCCAATGGACTCAGCCGGCATCGGCGACGTCGCAAGGAGCTGGAGGGGTAAGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGGCTTTTTTCAGTGTTTTAGTGGCAAAAATTAGCCGAAAAGGACTGTTTTTGACTCGAGTTTTGCGAATTTTAGGCCTCTTTTCCCTTAGTTTGTTGTTGGGAAAATGGGAATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCATAGAATGMTCAAAAATCGAGTTTTGGTTCATTTTTCCTGATTTTTGAACCACTTTTCATGAATTTTGAACCATTTTTCACGAATTTTGGGTCGTTTTTCATGAATTTTGGACGATTTTTCAGTATTTAGGACCATTTTTCCTGAATTTCGGTTTATATTTCATGAATTTCTTACTATTTACTATTTTTCACAAATTTCGCACCATTCTTAATGAATTTTCGGCTTTTTTTAAAATGAATTTTGAACCATTTTAATGAATTCTGAGCCATTTTTCATAAATTTCGGGTAATGTTTCATAAACTTTAGACGATTTTTTGAAATTTAGCGGGAAAAAATCGGCAAAAAGAAAATTTCAGAAGACTTTTCTAGAACCATTTTCTTCATTCTGTGTTTTTTCTTCTGAGCCTTTCAAGCAAATCCAGGAAAAATGACCCGAATTTCATGAAAAATCGACCAAAATTCATGAAAAACGACTTAAAATTCGTGAAAAATCGACCAAATTCATGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCANNNNNTGC</site>
                <isoschizomers>
                    <enzyme>ApaBI</enzyme>
                    <enzyme>BstAPI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>426 406 98 70</canonical_bands>
                <polymorphic_bands>832 98 70</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAAGGTGAAAGTTGAGATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATTCATGAAAAGTGGTTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGGCTTTTTTCAGTGTTTTAGTGGCAAAAATTAGCCGAAAAGGACTGTTTTTGACTCGAGTTTTGCGAATTTTAGGCCTCTTTTCCCTTAGTTTGTTGTTGGGAAAATGGGAATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCATAGAATGCTCAAAAATCGAGTTTTGGTTCATTTTTCCTGATTTTTGAACCACTTTTCATGAATT</canonical_amplicon>
		<polymorphic_amplicon>AGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGGCTTTTTTCAGTGTTTTAGTGGCAAAAATTAGCCGAAAAGGACTGTTTTTGACTCGAGTTTTGCGAATTTTAGGCCTCTTTTCCCTTAGTTTGTTGTTGGGAAAATGGGAATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCATAGAATGMTCAAAAATCGAGTTTTGGTTCATTTTTCCTGATTTTTGAACCACTTTTCATGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13438</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>232519</contig_pos>
        <strand>+</strand>
        <context>TAAAATGGGC[A/T]TAGAATGMTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATGGGAATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGC</left_flank>
        <right_flank>TAGAATGCTCAAAAATCGAGTTTTGGTTCATTTTTCCTGATTTTTGAACC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCTTCAGAACAAGATATTTTGACGGATTTGATGTCAAATGATAGATCTCGACGAGGTCCATCTTAGCTATGCCACACGGGCCGGGCTNNNNNNNNNNNNATCCGTCAAAATATCTTGTTCTGAAGCCGAGTTATCTGCCGGCCCGCAATCTGCCCAGGACGGCCTGTTTGCAACTATGAAAATAGGAGATTTTGACTCTTAGAGTACGCTTTTCCTCTCGAAAAATCGTTGTTTTCCAGAGCCAACAATTCGGATGGGCCAGCCAATGGACTCAGCCGGCATCGGCGACGTCGCAAGGAGCTGGAGGGGTAAGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGGCTTTTTTCAGTGTTTTAGTGGCAAAAATTAGCCGAAAAGGACTGTTTTTGACTCGAGTTTTGCGAATTTTAGGCCTCTTTTCCCTTAGTTTGTTGTTGGGAAAATGGGAATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCATAGAATGCTCAAAAATCGAGTTTTGGTTCATTTTTCCTGATTTTTGAACCACTTTTCATGAATTTTGAACCATTTTTCACGAATTTTGGGTCGTTTTTCATGAATTTTGGACGATTTTTCAGTATTTAGGACCATTTTTCCTGAATTTCGGTTTATATTTCATGAATTTCTTACTATTTACTATTTTTCACAAATTTCGCACCATTCTTAATGAATTTTCGGCTTTTTTTAAAATGAATTTTGAACCATTTTAATGAATTCTGAGCCATTTTTCATAAATTTCGGGTAATGTTTCATAAACTTTAGACGATTTTTTGAAATTTAGCGGGAAAAAATCGGCAAAAAGAAAATTTCAGAAGACTTTTCTAGAACCATTTTCTTCATTCTGTGTTTTTTCTTCTGAGCCTTTCAAGCAAATCCAGGAAAAATGACCCGAATTTCATGAAAAATCGACCAAAATTCATGAAAAACGACTTAAAATTCGTGAAAAATCGACCAAA</canonical>
            <polymorphic>GGCTTCAGAACAAGATATTTTGACGGATTTGATGTCAAATGATAGATCTCGACGAGGTCCATCTTAGCTATGCCACACGGGCCGGGCTNNNNNNNNNNNNATCCGTCAAAATATCTTGTTCTGAAGCCGAGTTATCTGCCGGCCCGCAATCTGCCCAGGACGGCCTGTTTGCAACTATGAAAATAGGAGATTTTGACTCTTAGAGTACGCTTTTCCTCTCGAAAAATCGTTGTTTTCCAGAGCCAACAATTCGGATGGGCCAGCCAATGGACTCAGCCGGCATCGGCGACGTCGCAAGGAGCTGGAGGGGTAAGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGGCTTTTTTCAGTGTTTTAGTGGCAAAAATTAGCCGAAAAGGACTGTTTTTGACTCGAGTTTTGCGAATTTTAGGCCTCTTTTCCCTTAGTTTGTTGTTGGGAAAATGGGAATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCWTAGAATGCTCAAAAATCGAGTTTTGGTTCATTTTTCCTGATTTTTGAACCACTTTTCATGAATTTTGAACCATTTTTCACGAATTTTGGGTCGTTTTTCATGAATTTTGGACGATTTTTCAGTATTTAGGACCATTTTTCCTGAATTTCGGTTTATATTTCATGAATTTCTTACTATTTACTATTTTTCACAAATTTCGCACCATTCTTAATGAATTTTCGGCTTTTTTTAAAATGAATTTTGAACCATTTTAATGAATTCTGAGCCATTTTTCATAAATTTCGGGTAATGTTTCATAAACTTTAGACGATTTTTTGAAATTTAGCGGGAAAAAATCGGCAAAAAGAAAATTTCAGAAGACTTTTCTAGAACCATTTTCTTCATTCTGTGTTTTTTCTTCTGAGCCTTTCAAGCAAATCCAGGAAAAATGACCCGAATTTCATGAAAAATCGACCAAAATTCATGAAAAACGACTTAAAATTCGTGAAAAATCGACCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCANNNNNTGC</site>
                <isoschizomers>
                    <enzyme>ApaBI</enzyme>
                    <enzyme>BstAPI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAAGAAAGGTGAAAGTTGAGATT</pcr_primer_p1>
		<pcr_primer_p2>ATGAAAAGTGGTTCAAAAATCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAAGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGGCTTTTTTCAGTGTTTTAGTGGCAAAAATTAGCCGAAAAGGACTGTTTTTGACTCGAGTTTTGCGAATTTTAGGCCTCTTTTCCCTTAGTTTGTTGTTGGGAAAATGGGAATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCATAGAATGCTCAAAAATCGAGTTTTGGTTCATTTTTCCTGATTTTTGAACCACTTTTCAT</canonical_amplicon>
		<polymorphic_amplicon>GTAAGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGGCTTTTTTCAGTGTTTTAGTGGCAAAAATTAGCCGAAAAGGACTGTTTTTGACTCGAGTTTTGCGAATTTTAGGCCTCTTTTCCCTTAGTTTGTTGTTGGGAAAATGGGAATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCWTAGAATGCTCAAAAATCGAGTTTTGGTTCATTTTTCCTGATTTTTGAACCACTTTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13439</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>232477</contig_pos>
        <strand>+</strand>
        <context>GGAAAATGGG[A/G]ATTTAACGGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGCGAATTTTAGGCCTCTTTTCCCTTAGTTTGTTGTTGGGAAAATGGG</left_flank>
        <right_flank>ATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCATAGAATGC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACGGGCCGACCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAACAAGATATTTTGACGGATTTGATGTCAAATGATAGATCTCGACGAGGTCCATCTTAGCTATGCCACACGGGCCGGGCTNNNNNNNNNNNNATCCGTCAAAATATCTTGTTCTGAAGCCGAGTTATCTGCCGGCCCGCAATCTGCCCAGGACGGCCTGTTTGCAACTATGAAAATAGGAGATTTTGACTCTTAGAGTACGCTTTTCCTCTCGAAAAATCGTTGTTTTCCAGAGCCAACAATTCGGATGGGCCAGCCAATGGACTCAGCCGGCATCGGCGACGTCGCAAGGAGCTGGAGGGGTAAGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGGCTTTTTTCAGTGTTTTAGTGGCAAAAATTAGCCGAAAAGGACTGTTTTTGACTCGAGTTTTGCGAATTTTAGGCCTCTTTTCCCTTAGTTTGTTGTTGGGAAAATGGGAATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCATAGAATGCTCAAAAATCGAGTTTTGGTTCATTTTTCCTGATTTTTGAACCACTTTTCATGAATTTTGAACCATTTTTCACGAATTTTGGGTCGTTTTTCATGAATTTTGGACGATTTTTCAGTATTTAGGACCATTTTTCCTGAATTTCGGTTTATATTTCATGAATTTCTTACTATTTACTATTTTTCACAAATTTCGCACCATTCTTAATGAATTTTCGGCTTTTTTTAAAATGAATTTTGAACCATTTTAATGAATTCTGAGCCATTTTTCATAAATTTCGGGTAATGTTTCATAAACTTTAGACGATTTTTTGAAATTTAGCGGGAAAAAATCGGCAAAAAGAAAATTTCAGAAGACTTTTCTAGAACCATTTTCTTCATTCTGTGTTTTTTCTTCTGAGCCTTTCAAGCAAATCCAGGAAAAATGACCCGAATTTCATGAAAAATCGACCAAA</canonical>
            <polymorphic>AAACGGGCCGACCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAACAAGATATTTTGACGGATTTGATGTCAAATGATAGATCTCGACGAGGTCCATCTTAGCTATGCCACACGGGCCGGGCTNNNNNNNNNNNNATCCGTCAAAATATCTTGTTCTGAAGCCGAGTTATCTGCCGGCCCGCAATCTGCCCAGGACGGCCTGTTTGCAACTATGAAAATAGGAGATTTTGACTCTTAGAGTACGCTTTTCCTCTCGAAAAATCGTTGTTTTCCAGAGCCAACAATTCGGATGGGCCAGCCAATGGACTCAGCCGGCATCGGCGACGTCGCAAGGAGCTGGAGGGGTAAGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGGCTTTTTTCAGTGTTTTAGTGGCAAAAATTAGCCGAAAAGGACTGTTTTTGACTCGAGTTTTGCGAATTTTAGGCCTCTTTTCCCTTAGTTTGTTGTTGGGAAAATGGGRATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCATAGAATGCTCAAAAATCGAGTTTTGGTTCATTTTTCCTGATTTTTGAACCACTTTTCATGAATTTTGAACCATTTTTCACGAATTTTGGGTCGTTTTTCATGAATTTTGGACGATTTTTCAGTATTTAGGACCATTTTTCCTGAATTTCGGTTTATATTTCATGAATTTCTTACTATTTACTATTTTTCACAAATTTCGCACCATTCTTAATGAATTTTCGGCTTTTTTTAAAATGAATTTTGAACCATTTTAATGAATTCTGAGCCATTTTTCATAAATTTCGGGTAATGTTTCATAAACTTTAGACGATTTTTTGAAATTTAGCGGGAAAAAATCGGCAAAAAGAAAATTTCAGAAGACTTTTCTAGAACCATTTTCTTCATTCTGTGTTTTTTCTTCTGAGCCTTTCAAGCAAATCCAGGAAAAATGACCCGAATTTCATGAAAAATCGACCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>455 103 87 44 41 41 30 28 23 23 21 21 21 21 21 20</canonical_bands>
                <polymorphic_bands>455 147 87 41 41 30 28 23 23 21 21 21 21 21 20</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>289 127 103 87 44 41 41 39 30 28 23 23 21 21 21 21 21 20</canonical_bands>
                <polymorphic_bands>289 147 127 87 41 41 39 30 28 23 23 21 21 21 21 21 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAAGAAAGGTGAAAGTTGAGATT</pcr_primer_p1>
		<pcr_primer_p2>ATGAAAAGTGGTTCAAAAATCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAAGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGGCTTTTTTCAGTGTTTTAGTGGCAAAAATTAGCCGAAAAGGACTGTTTTTGACTCGAGTTTTGCGAATTTTAGGCCTCTTTTCCCTTAGTTTGTTGTTGGGAAAATGGGAATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCATAGAATGCTCAAAAATCGAGTTTTGGTTCATTTTTCCTGATTTTTGAACCACTTTTCAT</canonical_amplicon>
		<polymorphic_amplicon>GTAAGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGGCTTTTTTCAGTGTTTTAGTGGCAAAAATTAGCCGAAAAGGACTGTTTTTGACTCGAGTTTTGCGAATTTTAGGCCTCTTTTCCCTTAGTTTGTTGTTGGGAAAATGGGRATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCATAGAATGCTCAAAAATCGAGTTTTGGTTCATTTTTCCTGATTTTTGAACCACTTTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13440</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>232454</contig_pos>
        <strand>+</strand>
        <context>TMTTTTCCCT[C/T]AGTTTGTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGGACTGTTTTTGACTCGAGTTTTGCGAATTTTAGGCCTCTTTTCCCT</left_flank>
        <right_flank>AGTTTGTTGTTGGGAAAATGGGAATTTAACGGCTTCGACGTTTTTCGAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCACAAAAATAGGCATAGTTGCAAACGGGCCGACCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAACAAGATATTTTGACGGATTTGATGTCAAATGATAGATCTCGACGAGGTCCATCTTAGCTATGCCACACGGGCCGGGCTNNNNNNNNNNNNATCCGTCAAAATATCTTGTTCTGAAGCCGAGTTATCTGCCGGCCCGCAATCTGCCCAGGACGGCCTGTTTGCAACTATGAAAATAGGAGATTTTGACTCTTAGAGTACGCTTTTCCTCTCGAAAAATCGTTGTTTTCCAGAGCCAACAATTCGGATGGGCCAGCCAATGGACTCAGCCGGCATCGGCGACGTCGCAAGGAGCTGGAGGGGTAAGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGGCTTTTTTCAGTGTTTTAGTGGCAAAAATTAGCCGAAAAGGACTGTTTTTGACTCGAGTTTTGCGAATTTTAGGCCTCTTTTCCCTTAGTTTGTTGTTGGGAAAATGGGAATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCATAGAATGCTCAAAAATCGAGTTTTGGTTCATTTTTCCTGATTTTTGAACCACTTTTCATGAATTTTGAACCATTTTTCACGAATTTTGGGTCGTTTTTCATGAATTTTGGACGATTTTTCAGTATTTAGGACCATTTTTCCTGAATTTCGGTTTATATTTCATGAATTTCTTACTATTTACTATTTTTCACAAATTTCGCACCATTCTTAATGAATTTTCGGCTTTTTTTAAAATGAATTTTGAACCATTTTAATGAATTCTGAGCCATTTTTCATAAATTTCGGGTAATGTTTCATAAACTTTAGACGATTTTTTGAAATTTAGCGGGAAAAAATCGGCAAAAAGAAAATTTCAGAAGACTTTTCTAGAACCATTTTCTTCATTCTGTGTTTTTTCTTCTGAGCCTTTCAAGCAAATCCAGGAAAAATGACCCG</canonical>
            <polymorphic>AGCACAAAAATAGGCATAGTTGCAAACGGGCCGACCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAACAAGATATTTTGACGGATTTGATGTCAAATGATAGATCTCGACGAGGTCCATCTTAGCTATGCCACACGGGCCGGGCTNNNNNNNNNNNNATCCGTCAAAATATCTTGTTCTGAAGCCGAGTTATCTGCCGGCCCGCAATCTGCCCAGGACGGCCTGTTTGCAACTATGAAAATAGGAGATTTTGACTCTTAGAGTACGCTTTTCCTCTCGAAAAATCGTTGTTTTCCAGAGCCAACAATTCGGATGGGCCAGCCAATGGACTCAGCCGGCATCGGCGACGTCGCAAGGAGCTGGAGGGGTAAGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGGCTTTTTTCAGTGTTTTAGTGGCAAAAATTAGCCGAAAAGGACTGTTTTTGACTCGAGTTTTGCGAATTTTAGGCCTCTTTTCCCTYAGTTTGTTGTTGGGAAAATGGGAATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCATAGAATGCTCAAAAATCGAGTTTTGGTTCATTTTTCCTGATTTTTGAACCACTTTTCATGAATTTTGAACCATTTTTCACGAATTTTGGGTCGTTTTTCATGAATTTTGGACGATTTTTCAGTATTTAGGACCATTTTTCCTGAATTTCGGTTTATATTTCATGAATTTCTTACTATTTACTATTTTTCACAAATTTCGCACCATTCTTAATGAATTTTCGGCTTTTTTTAAAATGAATTTTGAACCATTTTAATGAATTCTGAGCCATTTTTCATAAATTTCGGGTAATGTTTCATAAACTTTAGACGATTTTTTGAAATTTAGCGGGAAAAAATCGGCAAAAAGAAAATTTCAGAAGACTTTTCTAGAACCATTTTCTTCATTCTGTGTTTTTTCTTCTGAGCCTTTCAAGCAAATCCAGGAAAAATGACCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAAGAAAGGTGAAAGTTGAGATT</pcr_primer_p1>
		<pcr_primer_p2>ATGAAAAGTGGTTCAAAAATCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAAGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGGCTTTTTTCAGTGTTTTAGTGGCAAAAATTAGCCGAAAAGGACTGTTTTTGACTCGAGTTTTGCGAATTTTAGGCCTCTTTTCCCTTAGTTTGTTGTTGGGAAAATGGGAATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCATAGAATGCTCAAAAATCGAGTTTTGGTTCATTTTTCCTGATTTTTGAACCACTTTTCAT</canonical_amplicon>
		<polymorphic_amplicon>GTAAGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGGCTTTTTTCAGTGTTTTAGTGGCAAAAATTAGCCGAAAAGGACTGTTTTTGACTCGAGTTTTGCGAATTTTAGGCCTCTTTTCCCTYAGTTTGTTGTTGGGAAAATGGGAATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCATAGAATGCTCAAAAATCGAGTTTTGGTTCATTTTTCCTGATTTTTGAACCACTTTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13441</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>232445</contig_pos>
        <strand>+</strand>
        <context>TTTTAGGCCT[A/C]TTTTCCCTYA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTAGCCGAAAAGGACTGTTTTTGACTCGAGTTTTGCGAATTTTAGGCCT</left_flank>
        <right_flank>TTTTCCCTTAGTTTGTTGTTGGGAAAATGGGAATTTAACGGCTTCGACGT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAGATCTAGCACAAAAATAGGCATAGTTGCAAACGGGCCGACCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAACAAGATATTTTGACGGATTTGATGTCAAATGATAGATCTCGACGAGGTCCATCTTAGCTATGCCACACGGGCCGGGCTNNNNNNNNNNNNATCCGTCAAAATATCTTGTTCTGAAGCCGAGTTATCTGCCGGCCCGCAATCTGCCCAGGACGGCCTGTTTGCAACTATGAAAATAGGAGATTTTGACTCTTAGAGTACGCTTTTCCTCTCGAAAAATCGTTGTTTTCCAGAGCCAACAATTCGGATGGGCCAGCCAATGGACTCAGCCGGCATCGGCGACGTCGCAAGGAGCTGGAGGGGTAAGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGGCTTTTTTCAGTGTTTTAGTGGCAAAAATTAGCCGAAAAGGACTGTTTTTGACTCGAGTTTTGCGAATTTTAGGCCTCTTTTCCCTTAGTTTGTTGTTGGGAAAATGGGAATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCATAGAATGCTCAAAAATCGAGTTTTGGTTCATTTTTCCTGATTTTTGAACCACTTTTCATGAATTTTGAACCATTTTTCACGAATTTTGGGTCGTTTTTCATGAATTTTGGACGATTTTTCAGTATTTAGGACCATTTTTCCTGAATTTCGGTTTATATTTCATGAATTTCTTACTATTTACTATTTTTCACAAATTTCGCACCATTCTTAATGAATTTTCGGCTTTTTTTAAAATGAATTTTGAACCATTTTAATGAATTCTGAGCCATTTTTCATAAATTTCGGGTAATGTTTCATAAACTTTAGACGATTTTTTGAAATTTAGCGGGAAAAAATCGGCAAAAAGAAAATTTCAGAAGACTTTTCTAGAACCATTTTCTTCATTCTGTGTTTTTTCTTCTGAGCCTTTCAAGCAAATCCAGGAAA</canonical>
            <polymorphic>TCCAGATCTAGCACAAAAATAGGCATAGTTGCAAACGGGCCGACCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAACAAGATATTTTGACGGATTTGATGTCAAATGATAGATCTCGACGAGGTCCATCTTAGCTATGCCACACGGGCCGGGCTNNNNNNNNNNNNATCCGTCAAAATATCTTGTTCTGAAGCCGAGTTATCTGCCGGCCCGCAATCTGCCCAGGACGGCCTGTTTGCAACTATGAAAATAGGAGATTTTGACTCTTAGAGTACGCTTTTCCTCTCGAAAAATCGTTGTTTTCCAGAGCCAACAATTCGGATGGGCCAGCCAATGGACTCAGCCGGCATCGGCGACGTCGCAAGGAGCTGGAGGGGTAAGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGGCTTTTTTCAGTGTTTTAGTGGCAAAAATTAGCCGAAAAGGACTGTTTTTGACTCGAGTTTTGCGAATTTTAGGCCTMTTTTCCCTTAGTTTGTTGTTGGGAAAATGGGAATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCATAGAATGCTCAAAAATCGAGTTTTGGTTCATTTTTCCTGATTTTTGAACCACTTTTCATGAATTTTGAACCATTTTTCACGAATTTTGGGTCGTTTTTCATGAATTTTGGACGATTTTTCAGTATTTAGGACCATTTTTCCTGAATTTCGGTTTATATTTCATGAATTTCTTACTATTTACTATTTTTCACAAATTTCGCACCATTCTTAATGAATTTTCGGCTTTTTTTAAAATGAATTTTGAACCATTTTAATGAATTCTGAGCCATTTTTCATAAATTTCGGGTAATGTTTCATAAACTTTAGACGATTTTTTGAAATTTAGCGGGAAAAAATCGGCAAAAAGAAAATTTCAGAAGACTTTTCTAGAACCATTTTCTTCATTCTGTGTTTTTTCTTCTGAGCCTTTCAAGCAAATCCAGGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAAGAAAGGTGAAAGTTGAGATT</pcr_primer_p1>
		<pcr_primer_p2>ATGAAAAGTGGTTCAAAAATCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAAGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGGCTTTTTTCAGTGTTTTAGTGGCAAAAATTAGCCGAAAAGGACTGTTTTTGACTCGAGTTTTGCGAATTTTAGGCCTCTTTTCCCTTAGTTTGTTGTTGGGAAAATGGGAATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCATAGAATGCTCAAAAATCGAGTTTTGGTTCATTTTTCCTGATTTTTGAACCACTTTTCAT</canonical_amplicon>
		<polymorphic_amplicon>GTAAGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGGCTTTTTTCAGTGTTTTAGTGGCAAAAATTAGCCGAAAAGGACTGTTTTTGACTCGAGTTTTGCGAATTTTAGGCCTMTTTTCCCTTAGTTTGTTGTTGGGAAAATGGGAATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCATAGAATGCTCAAAAATCGAGTTTTGGTTCATTTTTCCTGATTTTTGAACCACTTTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13442</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>232418</contig_pos>
        <strand>+</strand>
        <context>GACTGTTTTT[C/G]ACTCGAGTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCTTTTTTCAGTGTTTTAGTGGCAAAAATTAGCCGAAAAGGACTGTTTTT</left_flank>
        <right_flank>ACTCGAGTTTTGCGAATTTTAGGCCTCTTTTCCCTTAGTTTGTTGTTGGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGCTGGGCTTGTTCGAACTTGTCTGGTCCAGATCTAGCACAAAAATAGGCATAGTTGCAAACGGGCCGACCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAACAAGATATTTTGACGGATTTGATGTCAAATGATAGATCTCGACGAGGTCCATCTTAGCTATGCCACACGGGCCGGGCTNNNNNNNNNNNNATCCGTCAAAATATCTTGTTCTGAAGCCGAGTTATCTGCCGGCCCGCAATCTGCCCAGGACGGCCTGTTTGCAACTATGAAAATAGGAGATTTTGACTCTTAGAGTACGCTTTTCCTCTCGAAAAATCGTTGTTTTCCAGAGCCAACAATTCGGATGGGCCAGCCAATGGACTCAGCCGGCATCGGCGACGTCGCAAGGAGCTGGAGGGGTAAGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGGCTTTTTTCAGTGTTTTAGTGGCAAAAATTAGCCGAAAAGGACTGTTTTTGACTCGAGTTTTGCGAATTTTAGGCCTCTTTTCCCTTAGTTTGTTGTTGGGAAAATGGGAATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCATAGAATGCTCAAAAATCGAGTTTTGGTTCATTTTTCCTGATTTTTGAACCACTTTTCATGAATTTTGAACCATTTTTCACGAATTTTGGGTCGTTTTTCATGAATTTTGGACGATTTTTCAGTATTTAGGACCATTTTTCCTGAATTTCGGTTTATATTTCATGAATTTCTTACTATTTACTATTTTTCACAAATTTCGCACCATTCTTAATGAATTTTCGGCTTTTTTTAAAATGAATTTTGAACCATTTTAATGAATTCTGAGCCATTTTTCATAAATTTCGGGTAATGTTTCATAAACTTTAGACGATTTTTTGAAATTTAGCGGGAAAAAATCGGCAAAAAGAAAATTTCAGAAGACTTTTCTAGAACCATTTTCTTCATTCTGTGTTTTTTCTT</canonical>
            <polymorphic>TGGCTGGGCTTGTTCGAACTTGTCTGGTCCAGATCTAGCACAAAAATAGGCATAGTTGCAAACGGGCCGACCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAACAAGATATTTTGACGGATTTGATGTCAAATGATAGATCTCGACGAGGTCCATCTTAGCTATGCCACACGGGCCGGGCTNNNNNNNNNNNNATCCGTCAAAATATCTTGTTCTGAAGCCGAGTTATCTGCCGGCCCGCAATCTGCCCAGGACGGCCTGTTTGCAACTATGAAAATAGGAGATTTTGACTCTTAGAGTACGCTTTTCCTCTCGAAAAATCGTTGTTTTCCAGAGCCAACAATTCGGATGGGCCAGCCAATGGACTCAGCCGGCATCGGCGACGTCGCAAGGAGCTGGAGGGGTAAGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGGCTTTTTTCAGTGTTTTAGTGGCAAAAATTAGCCGAAAAGGACTGTTTTTSACTCGAGTTTTGCGAATTTTAGGCCTCTTTTCCCTTAGTTTGTTGTTGGGAAAATGGGAATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCATAGAATGCTCAAAAATCGAGTTTTGGTTCATTTTTCCTGATTTTTGAACCACTTTTCATGAATTTTGAACCATTTTTCACGAATTTTGGGTCGTTTTTCATGAATTTTGGACGATTTTTCAGTATTTAGGACCATTTTTCCTGAATTTCGGTTTATATTTCATGAATTTCTTACTATTTACTATTTTTCACAAATTTCGCACCATTCTTAATGAATTTTCGGCTTTTTTTAAAATGAATTTTGAACCATTTTAATGAATTCTGAGCCATTTTTCATAAATTTCGGGTAATGTTTCATAAACTTTAGACGATTTTTTGAAATTTAGCGGGAAAAAATCGGCAAAAAGAAAATTTCAGAAGACTTTTCTAGAACCATTTTCTTCATTCTGTGTTTTTTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>500 296 129 75</canonical_bands>
                <polymorphic_bands>629 296 75</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAAGAAAGGTGAAAGTTGAGATT</pcr_primer_p1>
		<pcr_primer_p2>ATGAAAAGTGGTTCAAAAATCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAAGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGGCTTTTTTCAGTGTTTTAGTGGCAAAAATTAGCCGAAAAGGACTGTTTTTGACTCGAGTTTTGCGAATTTTAGGCCTCTTTTCCCTTAGTTTGTTGTTGGGAAAATGGGAATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCATAGAATGCTCAAAAATCGAGTTTTGGTTCATTTTTCCTGATTTTTGAACCACTTTTCAT</canonical_amplicon>
		<polymorphic_amplicon>GTAAGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGGCTTTTTTCAGTGTTTTAGTGGCAAAAATTAGCCGAAAAGGACTGTTTTTSACTCGAGTTTTGCGAATTTTAGGCCTCTTTTCCCTTAGTTTGTTGTTGGGAAAATGGGAATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCATAGAATGCTCAAAAATCGAGTTTTGGTTCATTTTTCCTGATTTTTGAACCACTTTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13443</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>6839</contig_pos>
        <strand></strand>
        <context>CCTTGGTTTT[C/A]TAGTCCATCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AGTGCTGTAGGGAATATAGCCACGGCCGAGTTTCCAACACCCTTGGTTTT</left_flank>
        <right_flank>TAGTCCATCAAGCCAGATGGTCTAGGTCATCCAGCTTGGTGGCCTAACTT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGCATTTTCGAAAAAATTCAAAATCGTCCAATCGGGATAAAAATCGATATCACGAGCTGAAATTGGCTGAAAATACTGTAAGAAAATTTCGGAAAAATCGAAATTTGAAAAAATTTTATTTTGAAAAATTCCAAAAAAAATTTTTCCCAAATTTCGACTTTTTCAAAAATTTCTTTCAGTATTCAAATTTTCAGCCAATTTCAGCTCGTGATATCAATTTTTTCACAATCGGATGATTTTGAAAAAATCGAGAAAAAAAAGTTTTTTTTTCGGAAATTTTGACTTCCAAGCTAGATAAGCTTTCTAGGCCACCTAGCTTGGTGGCCTAACTCGGAGAAAGTTAGGCCATCTAGTTTGGTGGCCTAAGTAAGGTTTCTAGGCCATGATGGCCTAACTTTCTTTTGGCGGTATTTTCAGCCAATTTCAGGAGCCGTTTTTCGTCCTGAAAAGTGCTGTAGGGAATATAGCCACGGCCGAGTTTCCAACACCCTTGGTTTTCTAGTCCATCAAGCCAGATGGTCTAGGTCATCCAGCTTGGTGGCCTAACTTTCTCCAAGATGATTTTTCTAGGTCACGCCCCTTTACCTGCACAGCAAAATCCTCGGGTCGAAACGGATTGATCAATTGTCCATTCTGTCGTTTCCAGACTGCCGTGAACGCCTCCCCAGTCTGATTTAGGGATCCATTTGAGATCAGAGCTCCGGATCCAAGCATTCCGATTGCTGAAGAGCATGTGCCTATGCCTGTGGCCGAGCCAGCCTGACCGCCAATTCCAATTGCACCGTCTACCGTACCACGCCGTTGTGGAGAGGCGTGACGCAGCTTTGCGAGGGCCGCTGGAACATTTTAGAGCTATTTTAGCCTACTTTAAGCCATTCGTTGAAAATTCTAGGCTAATTTAGAGCAATTCGAAGCGTTTCTTGATCAAAATAACCCCTAAATTCAGCTCTAAACCCCTTAAAAACCCCTAAAACCTTCAAAAAGTCTTAAAAATCGACA</canonical>
            <polymorphic>GCGCATTTTCGAAAAAATTCAAAATCGTCCAATCGGGATAAAAATCGATATCACGAGCTGAAATTGGCTGAAAATACTGTAAGAAAATTTCGGAAAAATCGAAATTTGAAAAAATTTTATTTTGAAAAATTCCAAAAAAAATTTTTCCCAAATTTCGACTTTTTCAAAAATTTCTTTCAGTATTCAAATTTTCAGCCAATTTCAGCTCGTGATATCAATTTTTTCACAATCGGATGATTTTGAAAAAATCGAGAAAAAAAAGTTTTTTTTTCGGAAATTTTGACTTCCAAGCTAGATAAGCTTTCTAGGCCACCTAGCTTGGTGGCCTAACTCGGAGAAAGTTAGGCCATCTAGTTTGGTGGCCTAAGTAAGGTTTCTAGGCCATGATGGCCTAACTTTCTTTTGGCGGTATTTTCAGCCAATTTCAGGAGCCGTTTTTCGTCCTGAAAAGTGCTGTAGGGAATATAGCCACGGCCGAGTTTCCAACACCCTTGGTTTTMTAGTCCATCAAGCCAGATGGTCTAGGTCATCCAGCTTGGTGGCCTAACTTTCTCCAAGATGATTTTTCTAGGTCACGCCCCTTTACCTGCACAGCAAAATCCTCGGGTCGAAACGGATTGATCAATTGTCCATTCTGTCGTTTCCAGACTGCCGTGAACGCCTCCCCAGTCTGATTTAGGGATCCATTTGAGATCAGAGCTCCGGATCCAAGCATTCCGATTGCTGAAGAGCATGTGCCTATGCCTGTGGCCGAGCCAGCCTGACCGCCAATTCCAATTGCACCGTCTACCGTACCACGCCGTTGTGGAGAGGCGTGACGCAGCTTTGCGAGGGCCGCTGGAACATTTTAGAGCTATTTTAGCCTACTTTAAGCCATTCGTTGAAAATTCTAGGCTAATTTAGAGCAATTCGAAGCGTTTCTTGATCAAAATAACCCCTAAATTCAGCTCTAAACCCCTTAAAAACCCCTAAAACCTTCAAAAAGTCTTAAAAATCGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>322 292 123 110 46 37 26 22 13 9</canonical_bands>
                <polymorphic_bands>322 292 145 110 46 37 26 13 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTTCTTTTGGCGGTATTT</pcr_primer_p1>
		<pcr_primer_p2>GAAACGACAGAATGGACAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTTCTTTTGGCGGTATTTTCAGCCAATTTCAGGAGCCGTTTTTCGTCCTGAAAAGTGCTGTAGGGAATATAGCCACGGCCGAGTTTCCAACACCCTTGGTTTTCTAGTCCATCAAGCCAGATGGTCTAGGTCATCCAGCTTGGTGGCCTAACTTTCTCCAAGATGATTTTTCTAGGTCACGCCCCTTTACCTGCACAGCAAAATCCTCGGGTCGAAACGGATTGATCAATTGTCCATTCTGTCGTTTC</canonical_amplicon>
		<polymorphic_amplicon>ACTTTCTTTTGGCGGTATTTTCAGCCAATTTCAGGAGCCGTTTTTCGTCCTGAAAAGTGCTGTAGGGAATATAGCCACGGCCGAGTTTCCAACACCCTTGGTTTTMTAGTCCATCAAGCCAGATGGTCTAGGTCATCCAGCTTGGTGGCCTAACTTTCTCCAAGATGATTTTTCTAGGTCACGCCCCTTTACCTGCACAGCAAAATCCTCGGGTCGAAACGGATTGATCAATTGTCCATTCTGTCGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13444</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>7224</contig_pos>
        <strand></strand>
        <context>CATTCGTTGA[A/C]AATTCTAGGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCGCTGGAACATTTTAGAGCTATTTTAGCCTACTTTAAGCCATTCGTTGA</left_flank>
        <right_flank>AATTCTAGGCTAATTTAGAGCAATTCGAAGCGTTTCTTGATCAAAATAAC</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGGCCTAACTTTCTTTTGGCGGTATTTTCAGCCAATTTCAGGAGCCGTTTTTCGTCCTGAAAAGTGCTGTAGGGAATATAGCCACGGCCGAGTTTCCAACACCCTTGGTTTTCTAGTCCATCAAGCCAGATGGTCTAGGTCATCCAGCTTGGTGGCCTAACTTTCTCCAAGATGATTTTTCTAGGTCACGCCCCTTTACCTGCACAGCAAAATCCTCGGGTCGAAACGGATTGATCAATTGTCCATTCTGTCGTTTCCAGACTGCCGTGAACGCCTCCCCAGTCTGATTTAGGGATCCATTTGAGATCAGAGCTCCGGATCCAAGCATTCCGATTGCTGAAGAGCATGTGCCTATGCCTGTGGCCGAGCCAGCCTGACCGCCAATTCCAATTGCACCGTCTACCGTACCACGCCGTTGTGGAGAGGCGTGACGCAGCTTTGCGAGGGCCGCTGGAACATTTTAGAGCTATTTTAGCCTACTTTAAGCCATTCGTTGAAAATTCTAGGCTAATTTAGAGCAATTCGAAGCGTTTCTTGATCAAAATAACCCCTAAATTCAGCTCTAAACCCCTTAAAAACCCCTAAAACCTTCAAAAAGTCTTAAAAATCGACATTTTTAAAAATTGTGCTCGGATGGCCTAGTGGGATTTTGGACATGCGAATTTTCGGAAAATCAACACCAGGGTTCGATTCTACTTGGTGGCAAACTTTTTTGAAATTTTTTGGCTTTTGTTTTAAGCAAGAATTCGGGGGTTTTAAAGGGTTCTAGACTCATTTTAGGAGTTTTTGGGTTACTGTACTTTCTAAAACTACCGTAACTCGAGGTACAGTAATCCTAGAAAAATGAAATTTGGAGCATTTGACTTGGCTCGTTGAGCGCTTTCAAATGAGTATACTCATGAATAACTTTTAAAATAATTTTTTGGGTTACTGTAGTTTTCTAGAAACTACCGTAACTCGAGCTACAATAACCCTAGAGATATGAAATTTACACCAAT</canonical>
            <polymorphic>GATGGCCTAACTTTCTTTTGGCGGTATTTTCAGCCAATTTCAGGAGCCGTTTTTCGTCCTGAAAAGTGCTGTAGGGAATATAGCCACGGCCGAGTTTCCAACACCCTTGGTTTTCTAGTCCATCAAGCCAGATGGTCTAGGTCATCCAGCTTGGTGGCCTAACTTTCTCCAAGATGATTTTTCTAGGTCACGCCCCTTTACCTGCACAGCAAAATCCTCGGGTCGAAACGGATTGATCAATTGTCCATTCTGTCGTTTCCAGACTGCCGTGAACGCCTCCCCAGTCTGATTTAGGGATCCATTTGAGATCAGAGCTCCGGATCCAAGCATTCCGATTGCTGAAGAGCATGTGCCTATGCCTGTGGCCGAGCCAGCCTGACCGCCAATTCCAATTGCACCGTCTACCGTACCACGCCGTTGTGGAGAGGCGTGACGCAGCTTTGCGAGGGCCGCTGGAACATTTTAGAGCTATTTTAGCCTACTTTAAGCCATTCGTTGAMAATTCTAGGCTAATTTAGAGCAATTCGAAGCGTTTCTTGATCAAAATAACCCCTAAATTCAGCTCTAAACCCCTTAAAAACCCCTAAAACCTTCAAAAAGTCTTAAAAATCGACATTTTTAAAAATTGTGCTCGGATGGCCTAGTGGGATTTTGGACATGCGAATTTTCGGAAAATCAACACCAGGGTTCGATTCTACTTGGTGGCAAACTTTTTTGAAATTTTTTGGCTTTTGTTTTAAGCAAGAATTCGGGGGTTTTAAAGGGTTCTAGACTCATTTTAGGAGTTTTTGGGTTACTGTACTTTCTAAAACTACCGTAACTCGAGGTACAGTAATCCTAGAAAAATGAAATTTGGAGCATTTGACTTGGCTCGTTGAGCGCTTTCAAATGAGTATACTCATGAATAACTTTTAAAATAATTTTTTGGGTTACTGTAGTTTTCTAGAAACTACCGTAACTCGAGCTACAATAACCCTAGAGATATGAAATTTACACCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>500 138 107 104 56 55 27 13</canonical_bands>
                <polymorphic_bands>555 138 107 104 56 27 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCCATTTGAGATCAGAGC</pcr_primer_p1>
		<pcr_primer_p2>ATTGAAGTTGGCTCGTGTAG</pcr_primer_p2>
		<pcr_amplicon_size>860</pcr_amplicon_size>
		<canonical_amplicon>GATCCATTTGAGATCAGAGCTCCGGATCCAAGCATTCCGATTGCTGAAGAGCATGTGCCTATGCCTGTGGCCGAGCCAGCCTGACCGCCAATTCCAATTGCACCGTCTACCGTACCACGCCGTTGTGGAGAGGCGTGACGCAGCTTTGCGAGGGCCGCTGGAACATTTTAGAGCTATTTTAGCCTACTTTAAGCCATTCGTTGAAAATTCTAGGCTAATTTAGA</canonical_amplicon>
		<polymorphic_amplicon>GATCCATTTGAGATCAGAGCTCCGGATCCAAGCATTCCGATTGCTGAAGAGCATGTGCCTATGCCTGTGGCCGAGCCAGCCTGACCGCCAATTCCAATTGCACCGTCTACCGTACCACGCCGTTGTGGAGAGGCGTGACGCAGCTTTGCGAGGGCCGCTGGAACATTTTAGAGCTATTTTAGCCTACTTTAAGCCATTCGTTGAMAATTCTAGGCTAATTTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13445</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>10813</contig_pos>
        <strand></strand>
        <context>AGGCCATCCC[G/C]TTTCCCCCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TGATTCTAAAAGCCTGAAAAATCGCATTTTTCCAATTTTTAGGCCATCCC</left_flank>
        <right_flank>TTTCCCCCAGCCCTAAATACTTCATTTTTCGCCGGATTTTTCCCCAGAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGATTTTTTTTGGGTTACTGTAGTTTTTCCTGGGCCACTAAATCTACTGTATCTCGAGTTACAGTAATCCTAAAGCAATGAAAATTACACCAATCGACTTGAAATTCCAAGAGCTTTCAAATGAGTATAATCATGACTATATTTGAGTAATTTTCGGGATTACTGTAGTTTTGCCCAAAGTACAGTACACCGAATATGATTTCAAAAAATAGTCATGAGTATACTCATTTGAAAGCTCTTAAGATTTCAAGTCGATTAGTGCATATTTCATTGCTCTAAGATTACTGTAGCTCGAGATACGGCCGACTTTCTAATAGTGGCCTAGCTTTTGCAAAAACTCTTCCATGGGTACAACACCCCGATTGTGAGGGATTTCGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGGGAATTCGATTTTGCTATGGGAAATCTAGAAAAATTGATTCTAAAAGCCTGAAAAATCGCATTTTTCCAATTTTTAGGCCATCCCGTTTCCCCCAGCCCTAAATACTTCATTTTTCGCCGGATTTTTCCCCAGAAATCTCAGCGAATTCCCTACCTTCTCATTCTCCCTCAACACAATGCCCGTCTCGCCCATTCCCATCTTCTTAGGGGCCGATAAGACGTCGGCGGGCAGCTGAATTCGCGGCCTGAACTGCACGGAAATCGCCGATCTCCGGGCCATTCGATAATACGAGTAATTCATCCAATGAGGGATAAAATATTCACATCTGGTGTCCTTCTGCTCGACGATGGGGTGGAAAACGAATAGAGGGACCGCGTGGAGGGGTTGCTCTCCGAGACAGACCATATCCAATGAGATACCCATGTCGATGACCCTTTGTTTAGTAAGACTAACGAGGTCTCGGTCCACATGAAGTACACCGTTGCCAGGGGTGACGAAGATGATCTGGAATGTTAGAAAATTTGGGTGTTTTTGTCTCTAGGACAATTTGGAGCCTTTCTAGGCCATCTTGGACCAAAATAACCC</canonical>
            <polymorphic>TGAGATTTTTTTTGGGTTACTGTAGTTTTTCCTGGGCCACTAAATCTACTGTATCTCGAGTTACAGTAATCCTAAAGCAATGAAAATTACACCAATCGACTTGAAATTCCAAGAGCTTTCAAATGAGTATAATCATGACTATATTTGAGTAATTTTCGGGATTACTGTAGTTTTGCCCAAAGTACAGTACACCGAATATGATTTCAAAAAATAGTCATGAGTATACTCATTTGAAAGCTCTTAAGATTTCAAGTCGATTAGTGCATATTTCATTGCTCTAAGATTACTGTAGCTCGAGATACGGCCGACTTTCTAATAGTGGCCTAGCTTTTGCAAAAACTCTTCCATGGGTACAACACCCCGATTGTGAGGGATTTCGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGGGAATTCGATTTTGCTATGGGAAATCTAGAAAAATTGATTCTAAAAGCCTGAAAAATCGCATTTTTCCAATTTTTAGGCCATCCCSTTTCCCCCAGCCCTAAATACTTCATTTTTCGCCGGATTTTTCCCCAGAAATCTCAGCGAATTCCCTACCTTCTCATTCTCCCTCAACACAATGCCCGTCTCGCCCATTCCCATCTTCTTAGGGGCCGATAAGACGTCGGCGGGCAGCTGAATTCGCGGCCTGAACTGCACGGAAATCGCCGATCTCCGGGCCATTCGATAATACGAGTAATTCATCCAATGAGGGATAAAATATTCACATCTGGTGTCCTTCTGCTCGACGATGGGGTGGAAAACGAATAGAGGGACCGCGTGGAGGGGTTGCTCTCCGAGACAGACCATATCCAATGAGATACCCATGTCGATGACCCTTTGTTTAGTAAGACTAACGAGGTCTCGGTCCACATGAAGTACACCGTTGCCAGGGGTGACGAAGATGATCTGGAATGTTAGAAAATTTGGGTGTTTTTGTCTCTAGGACAATTTGGAGCCTTTCTAGGCCATCTTGGACCAAAATAACCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGAAAAAGTCTCTAGAGGTAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTGTTGAGGGAGAATGA</pcr_primer_p2>
		<pcr_amplicon_size>210</pcr_amplicon_size>
		<canonical_amplicon>CCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGGGAATTCGATTTTGCTATGGGAAATCTAGAAAAATTGATTCTAAAAGCCTGAAAAATCGCATTTTTCCAATTTTTAGGCCATCCCGTTTCCCCCAGCCCTAAATACTTCATTTTTCGCCGGATTTTTCCCCAGAAATCTCAGCGAATTCCCTACCTTCTCATTCTCCCTCAACACAAT</canonical_amplicon>
		<polymorphic_amplicon>CCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGGGAATTCGATTTTGCTATGGGAAATCTAGAAAAATTGATTCTAAAAGCCTGAAAAATCGCATTTTTCCAATTTTTAGGCCATCCCSTTTCCCCCAGCCCTAAATACTTCATTTTTCGCCGGATTTTTCCCCAGAAATCTCAGCGAATTCCCTACCTTCTCATTCTCCCTCAACACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13446</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>10775</contig_pos>
        <strand></strand>
        <context>ATTCTAAAAG[C/T]CTGAAAAATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGGGAATTCGATTTTGCTATGGGAAATCTAGAAAAATTGATTCTAAAAG</left_flank>
        <right_flank>CTGAAAAATCGCATTTTTCCAATTTTTAGGCCATCCCGTTTCCCCCAGCC</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCCAGAGCTTTCAAGTGAATATACTCATGAGTATTTTTGAGATTTTTTTTGGGTTACTGTAGTTTTTCCTGGGCCACTAAATCTACTGTATCTCGAGTTACAGTAATCCTAAAGCAATGAAAATTACACCAATCGACTTGAAATTCCAAGAGCTTTCAAATGAGTATAATCATGACTATATTTGAGTAATTTTCGGGATTACTGTAGTTTTGCCCAAAGTACAGTACACCGAATATGATTTCAAAAAATAGTCATGAGTATACTCATTTGAAAGCTCTTAAGATTTCAAGTCGATTAGTGCATATTTCATTGCTCTAAGATTACTGTAGCTCGAGATACGGCCGACTTTCTAATAGTGGCCTAGCTTTTGCAAAAACTCTTCCATGGGTACAACACCCCGATTGTGAGGGATTTCGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGGGAATTCGATTTTGCTATGGGAAATCTAGAAAAATTGATTCTAAAAGCCTGAAAAATCGCATTTTTCCAATTTTTAGGCCATCCCGTTTCCCCCAGCCCTAAATACTTCATTTTTCGCCGGATTTTTCCCCAGAAATCTCAGCGAATTCCCTACCTTCTCATTCTCCCTCAACACAATGCCCGTCTCGCCCATTCCCATCTTCTTAGGGGCCGATAAGACGTCGGCGGGCAGCTGAATTCGCGGCCTGAACTGCACGGAAATCGCCGATCTCCGGGCCATTCGATAATACGAGTAATTCATCCAATGAGGGATAAAATATTCACATCTGGTGTCCTTCTGCTCGACGATGGGGTGGAAAACGAATAGAGGGACCGCGTGGAGGGGTTGCTCTCCGAGACAGACCATATCCAATGAGATACCCATGTCGATGACCCTTTGTTTAGTAAGACTAACGAGGTCTCGGTCCACATGAAGTACACCGTTGCCAGGGGTGACGAAGATGATCTGGAATGTTAGAAAATTTGGGTGTTTTTGTCTCTAGGACAAT</canonical>
            <polymorphic>TCCCAGAGCTTTCAAGTGAATATACTCATGAGTATTTTTGAGATTTTTTTTGGGTTACTGTAGTTTTTCCTGGGCCACTAAATCTACTGTATCTCGAGTTACAGTAATCCTAAAGCAATGAAAATTACACCAATCGACTTGAAATTCCAAGAGCTTTCAAATGAGTATAATCATGACTATATTTGAGTAATTTTCGGGATTACTGTAGTTTTGCCCAAAGTACAGTACACCGAATATGATTTCAAAAAATAGTCATGAGTATACTCATTTGAAAGCTCTTAAGATTTCAAGTCGATTAGTGCATATTTCATTGCTCTAAGATTACTGTAGCTCGAGATACGGCCGACTTTCTAATAGTGGCCTAGCTTTTGCAAAAACTCTTCCATGGGTACAACACCCCGATTGTGAGGGATTTCGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGGGAATTCGATTTTGCTATGGGAAATCTAGAAAAATTGATTCTAAAAGYCTGAAAAATCGCATTTTTCCAATTTTTAGGCCATCCCGTTTCCCCCAGCCCTAAATACTTCATTTTTCGCCGGATTTTTCCCCAGAAATCTCAGCGAATTCCCTACCTTCTCATTCTCCCTCAACACAATGCCCGTCTCGCCCATTCCCATCTTCTTAGGGGCCGATAAGACGTCGGCGGGCAGCTGAATTCGCGGCCTGAACTGCACGGAAATCGCCGATCTCCGGGCCATTCGATAATACGAGTAATTCATCCAATGAGGGATAAAATATTCACATCTGGTGTCCTTCTGCTCGACGATGGGGTGGAAAACGAATAGAGGGACCGCGTGGAGGGGTTGCTCTCCGAGACAGACCATATCCAATGAGATACCCATGTCGATGACCCTTTGTTTAGTAAGACTAACGAGGTCTCGGTCCACATGAAGTACACCGTTGCCAGGGGTGACGAAGATGATCTGGAATGTTAGAAAATTTGGGTGTTTTTGTCTCTAGGACAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>272 134 122 114 79 66 55 32 31 22 18 18 12 12 8 5</canonical_bands>
                <polymorphic_bands>272 165 122 114 79 66 55 32 22 18 18 12 12 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGAAAAAGTCTCTAGAGGTAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTGTTGAGGGAGAATGA</pcr_primer_p2>
		<pcr_amplicon_size>210</pcr_amplicon_size>
		<canonical_amplicon>CCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGGGAATTCGATTTTGCTATGGGAAATCTAGAAAAATTGATTCTAAAAGCCTGAAAAATCGCATTTTTCCAATTTTTAGGCCATCCCGTTTCCCCCAGCCCTAAATACTTCATTTTTCGCCGGATTTTTCCCCAGAAATCTCAGCGAATTCCCTACCTTCTCATTCTCCCTCAACACAAT</canonical_amplicon>
		<polymorphic_amplicon>CCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGGGAATTCGATTTTGCTATGGGAAATCTAGAAAAATTGATTCTAAAAGYCTGAAAAATCGCATTTTTCCAATTTTTAGGCCATCCCGTTTCCCCCAGCCCTAAATACTTCATTTTTCGCCGGATTTTTCCCCAGAAATCTCAGCGAATTCCCTACCTTCTCATTCTCCCTCAACACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13447</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>10740</contig_pos>
        <strand></strand>
        <context>AATTCGATTT[T/C]GCTATGGGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGGGAATTCGATTT</left_flank>
        <right_flank>GCTATGGGAAATCTAGAAAAATTGATTCTAAAAGCCTGAAAAATCGCATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAAGATTGAAATTTAGCGCATTTGACTTGAAATTCCCAGAGCTTTCAAGTGAATATACTCATGAGTATTTTTGAGATTTTTTTTGGGTTACTGTAGTTTTTCCTGGGCCACTAAATCTACTGTATCTCGAGTTACAGTAATCCTAAAGCAATGAAAATTACACCAATCGACTTGAAATTCCAAGAGCTTTCAAATGAGTATAATCATGACTATATTTGAGTAATTTTCGGGATTACTGTAGTTTTGCCCAAAGTACAGTACACCGAATATGATTTCAAAAAATAGTCATGAGTATACTCATTTGAAAGCTCTTAAGATTTCAAGTCGATTAGTGCATATTTCATTGCTCTAAGATTACTGTAGCTCGAGATACGGCCGACTTTCTAATAGTGGCCTAGCTTTTGCAAAAACTCTTCCATGGGTACAACACCCCGATTGTGAGGGATTTCGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGGGAATTCGATTTTGCTATGGGAAATCTAGAAAAATTGATTCTAAAAGCCTGAAAAATCGCATTTTTCCAATTTTTAGGCCATCCCGTTTCCCCCAGCCCTAAATACTTCATTTTTCGCCGGATTTTTCCCCAGAAATCTCAGCGAATTCCCTACCTTCTCATTCTCCCTCAACACAATGCCCGTCTCGCCCATTCCCATCTTCTTAGGGGCCGATAAGACGTCGGCGGGCAGCTGAATTCGCGGCCTGAACTGCACGGAAATCGCCGATCTCCGGGCCATTCGATAATACGAGTAATTCATCCAATGAGGGATAAAATATTCACATCTGGTGTCCTTCTGCTCGACGATGGGGTGGAAAACGAATAGAGGGACCGCGTGGAGGGGTTGCTCTCCGAGACAGACCATATCCAATGAGATACCCATGTCGATGACCCTTTGTTTAGTAAGACTAACGAGGTCTCGGTCCACATGAAGTACACCGTTGCCAGGGGTGACGAAGATGATCTGGAATG</canonical>
            <polymorphic>TAGAAGATTGAAATTTAGCGCATTTGACTTGAAATTCCCAGAGCTTTCAAGTGAATATACTCATGAGTATTTTTGAGATTTTTTTTGGGTTACTGTAGTTTTTCCTGGGCCACTAAATCTACTGTATCTCGAGTTACAGTAATCCTAAAGCAATGAAAATTACACCAATCGACTTGAAATTCCAAGAGCTTTCAAATGAGTATAATCATGACTATATTTGAGTAATTTTCGGGATTACTGTAGTTTTGCCCAAAGTACAGTACACCGAATATGATTTCAAAAAATAGTCATGAGTATACTCATTTGAAAGCTCTTAAGATTTCAAGTCGATTAGTGCATATTTCATTGCTCTAAGATTACTGTAGCTCGAGATACGGCCGACTTTCTAATAGTGGCCTAGCTTTTGCAAAAACTCTTCCATGGGTACAACACCCCGATTGTGAGGGATTTCGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGGGAATTCGATTTYGCTATGGGAAATCTAGAAAAATTGATTCTAAAAGCCTGAAAAATCGCATTTTTCCAATTTTTAGGCCATCCCGTTTCCCCCAGCCCTAAATACTTCATTTTTCGCCGGATTTTTCCCCAGAAATCTCAGCGAATTCCCTACCTTCTCATTCTCCCTCAACACAATGCCCGTCTCGCCCATTCCCATCTTCTTAGGGGCCGATAAGACGTCGGCGGGCAGCTGAATTCGCGGCCTGAACTGCACGGAAATCGCCGATCTCCGGGCCATTCGATAATACGAGTAATTCATCCAATGAGGGATAAAATATTCACATCTGGTGTCCTTCTGCTCGACGATGGGGTGGAAAACGAATAGAGGGACCGCGTGGAGGGGTTGCTCTCCGAGACAGACCATATCCAATGAGATACCCATGTCGATGACCCTTTGTTTAGTAAGACTAACGAGGTCTCGGTCCACATGAAGTACACCGTTGCCAGGGGTGACGAAGATGATCTGGAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATTCCGAAAAAGTCTCTA</pcr_primer_p1>
		<pcr_primer_p2>ATTGTGTTGAGGGAGAATGA</pcr_primer_p2>
		<pcr_amplicon_size>215</pcr_amplicon_size>
		<canonical_amplicon>CGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGGGAATTCGATTTTGCTATGGGAAATCTAGAAAAATTGATTCTAAAAGCCTGAAAAATCGCATTTTTCCAATTTTTAGGCCATCCCGTTTCCCCCAGCCCTAAATACTTCATTTTTCGCCGGATTTTTCCCCAGAAATCTCAGCGAATTCCCTACCTTCTCATTCTCCCTCAACACAAT</canonical_amplicon>
		<polymorphic_amplicon>CGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGGGAATTCGATTTYGCTATGGGAAATCTAGAAAAATTGATTCTAAAAGCCTGAAAAATCGCATTTTTCCAATTTTTAGGCCATCCCGTTTCCCCCAGCCCTAAATACTTCATTTTTCGCCGGATTTTTCCCCAGAAATCTCAGCGAATTCCCTACCTTCTCATTCTCCCTCAACACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13449</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>10687</contig_pos>
        <strand></strand>
        <context>attgtgaggg[A/T]TTTCGATTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTAGCTTTTGCAAAAACTCTTCCATGGGTACAACACCCCGATTGTGAGGG</left_flank>
        <right_flank>TTTCGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGGGAATTCGAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGGTTACTGTAGCTTTGTAAAAACTATCGTATCTCGAGTTACAGTAATCCTAGAAGATTGAAATTTAGCGCATTTGACTTGAAATTCCCAGAGCTTTCAAGTGAATATACTCATGAGTATTTTTGAGATTTTTTTTGGGTTACTGTAGTTTTTCCTGGGCCACTAAATCTACTGTATCTCGAGTTACAGTAATCCTAAAGCAATGAAAATTACACCAATCGACTTGAAATTCCAAGAGCTTTCAAATGAGTATAATCATGACTATATTTGAGTAATTTTCGGGATTACTGTAGTTTTGCCCAAAGTACAGTACACCGAATATGATTTCAAAAAATAGTCATGAGTATACTCATTTGAAAGCTCTTAAGATTTCAAGTCGATTAGTGCATATTTCATTGCTCTAAGATTACTGTAGCTCGAGATACGGCCGACTTTCTAATAGTGGCCTAGCTTTTGCAAAAACTCTTCCATGGGTACAACACCCCGATTGTGAGGGATTTCGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGGGAATTCGATTTTGCTATGGGAAATCTAGAAAAATTGATTCTAAAAGCCTGAAAAATCGCATTTTTCCAATTTTTAGGCCATCCCGTTTCCCCCAGCCCTAAATACTTCATTTTTCGCCGGATTTTTCCCCAGAAATCTCAGCGAATTCCCTACCTTCTCATTCTCCCTCAACACAATGCCCGTCTCGCCCATTCCCATCTTCTTAGGGGCCGATAAGACGTCGGCGGGCAGCTGAATTCGCGGCCTGAACTGCACGGAAATCGCCGATCTCCGGGCCATTCGATAATACGAGTAATTCATCCAATGAGGGATAAAATATTCACATCTGGTGTCCTTCTGCTCGACGATGGGGTGGAAAACGAATAGAGGGACCGCGTGGAGGGGTTGCTCTCCGAGACAGACCATATCCAATGAGATACCCATGTCGATGACCCTTTGTTTAGTAAGACTAACGAGGTC</canonical>
            <polymorphic>TTTGGGTTACTGTAGCTTTGTAAAAACTATCGTATCTCGAGTTACAGTAATCCTAGAAGATTGAAATTTAGCGCATTTGACTTGAAATTCCCAGAGCTTTCAAGTGAATATACTCATGAGTATTTTTGAGATTTTTTTTGGGTTACTGTAGTTTTTCCTGGGCCACTAAATCTACTGTATCTCGAGTTACAGTAATCCTAAAGCAATGAAAATTACACCAATCGACTTGAAATTCCAAGAGCTTTCAAATGAGTATAATCATGACTATATTTGAGTAATTTTCGGGATTACTGTAGTTTTGCCCAAAGTACAGTACACCGAATATGATTTCAAAAAATAGTCATGAGTATACTCATTTGAAAGCTCTTAAGATTTCAAGTCGATTAGTGCATATTTCATTGCTCTAAGATTACTGTAGCTCGAGATACGGCCGACTTTCTAATAGTGGCCTAGCTTTTGCAAAAACTCTTCCATGGGTACAACACCCCGATTGTGAGGGWTTTCGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGGGAATTCGATTTTGCTATGGGAAATCTAGAAAAATTGATTCTAAAAGCCTGAAAAATCGCATTTTTCCAATTTTTAGGCCATCCCGTTTCCCCCAGCCCTAAATACTTCATTTTTCGCCGGATTTTTCCCCAGAAATCTCAGCGAATTCCCTACCTTCTCATTCTCCCTCAACACAATGCCCGTCTCGCCCATTCCCATCTTCTTAGGGGCCGATAAGACGTCGGCGGGCAGCTGAATTCGCGGCCTGAACTGCACGGAAATCGCCGATCTCCGGGCCATTCGATAATACGAGTAATTCATCCAATGAGGGATAAAATATTCACATCTGGTGTCCTTCTGCTCGACGATGGGGTGGAAAACGAATAGAGGGACCGCGTGGAGGGGTTGCTCTCCGAGACAGACCATATCCAATGAGATACCCATGTCGATGACCCTTTGTTTAGTAAGACTAACGAGGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATAACCCATAAAATCAATTCAG</pcr_primer_p1>
		<pcr_primer_p2>AATTTTTCTAGATTTCCCATAGC</pcr_primer_p2>
		<pcr_amplicon_size>949</pcr_amplicon_size>
		<canonical_amplicon>GATTTCGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGGGAATTCGATTTTGCTATGGGAAATCTAGAAAAATT</canonical_amplicon>
		<polymorphic_amplicon>GWTTTCGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGGGAATTCGATTTTGCTATGGGAAATCTAGAAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13450</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>103139</contig_pos>
        <strand>+</strand>
        <context>GGGATTTTTA[A/G]GACCATGTAt</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCCACATCGAGACACAAATGCAACGGATCCGATTCAGGTGGGATTTTTA</left_flank>
        <right_flank>GACCATGTATTTGAGCTCAATTATCTCGCTTCTTGTAAGAGATATCAGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTCTAGAAAAGTGCTCCATGCTCTTCTAATTCTCTCATTTTCCAATTTGGCGGCTTCCAAAACCAAGTGCCTTATGGCCACCGGAGTTTTAAAGTGTCCCACTGATCCACATGCTGTCAAAAAGGTCCATATTGATCTTTGGGATGAGGATTGTGAGTTTCTGAATTTTTTAAGTTCTCGAATTTTTGAGTTTTGAATTCTTGAATCTTTGAATTTTTGAATTTTTGAATTTTTGAATTTTTGAGTTTTCGAATTTTTGAATTTTCAAAATTTTAACCTCTAAATTTTTGCAAACTGCCTAGCTGCTTCCAGCCCTTCCCCTGGAATCCGATGACCTAATGGGTCGAACCTGGAGTGATATCCATGGGAATTTCCGAGTAACTGGATGTGCAAGTGATTTTGGTCCCATTAACACCCCCGACCCATATATTTATATCCAACACGATTGCCCACATCGAGACACAAATGCAACGGATCCGATTCAGGTGGGATTTTTAGGACCATGTATTTGAGCTCAATTATCTCGCTTCTTGTAAGAGATATCAGATTTTTGTCAACTGCTGAAATGTTTTTCTTTAAATTTTGCATATTTTATTAGTTGACAAAACTTTGATATCTTTTACAGAAAGCGAGATACGTGAGCTTAAAGTTTGCGTCATGCTTTTTGAGCGCGGCACCACAATCGTCAATTGTGCTCTAATTTATCTCACTTTCTGTAATCGATATCAAAAAGTGGTAAACTAGTTAGATATAAACTAACAAAATGTGTAGAATTTTATGAAGATCGTTTTGTCAGTTGAAAGATTTTTTTTTGCTTCAAAAGGACCGAAATAAATTACCTCAAAAGCAGTTAGCTTCTCTGCGCCTTCATCCCTGAGCGCAGGCTCCCCAACCATCAATTTTTCTTCAATTTATCTCGCTCTCTAAAGAAGCTATCAAAAATGTGCAAAATTTGGCTCTTTATGACAAGGGGGCCCATGGGAAAAGGGGGGGGGGGC</canonical>
            <polymorphic>TCTTCTAGAAAAGTGCTCCATGCTCTTCTAATTCTCTCATTTTCCAATTTGGCGGCTTCCAAAACCAAGTGCCTTATGGCCACCGGAGTTTTAAAGTGTCCCACTGATCCACATGCTGTCAAAAAGGTCCATATTGATCTTTGGGATGAGGATTGTGAGTTTCTGAATTTTTTAAGTTCTCGAATTTTTGAGTTTTGAATTCTTGAATCTTTGAATTTTTGAATTTTTGAATTTTTGAATTTTTGAGTTTTCGAATTTTTGAATTTTCAAAATTTTAACCTCTAAATTTTTGCAAACTGCCTAGCTGCTTCCAGCCCTTCCCCTGGAATCCGATGACCTAATGGGTCGAACCTGGAGTGATATCCATGGGAATTTCCGAGTAACTGGATGTGCAAGTGATTTTGGTCCCATTAACACCCCCGACCCATATATTTATATCCAACACGATTGCCCACATCGAGACACAAATGCAACGGATCCGATTCAGGTGGGATTTTTARGACCATGTATTTGAGCTCAATTATCTCGCTTCTTGTAAGAGATATCAGATTTTTGTCAACTGCTGAAATGTTTTTCTTTAAATTTTGCATATTTTATTAGTTGACAAAACTTTGATATCTTTTACAGAAAGCGAGATACGTGAGCTTAAAGTTTGCGTCATGCTTTTTGAGCGCGGCACCACAATCGTCAATTGTGCTCTAATTTATCTCACTTTCTGTAATCGATATCAAAAAGTGGTAAACTAGTTAGATATAAACTAACAAAATGTGTAGAATTTTATGAAGATCGTTTTGTCAGTTGAAAGATTTTTTTTTGCTTCAAAAGGACCGAAATAAATTACCTCAAAAGCAGTTAGCTTCTCTGCGCCTTCATCCCTGAGCGCAGGCTCCCCAACCATCAATTTTTCTTCAATTTATCTCGCTCTCTAAAGAAGCTATCAAAAATGTGCAAAATTTGGCTCTTTATGACAAGGGGGCCCATGGGAAAAGGGGGGGGGGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>325 278 175 126 96</canonical_bands>
                <polymorphic_bands>421 278 175 126</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>325 278 149 126 96 26</canonical_bands>
                <polymorphic_bands>421 278 149 126 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATATATTTATATCCAACACGATTG</pcr_primer_p1>
		<pcr_primer_p2>TAAATTGAAGAAAAATTGATGGT</pcr_primer_p2>
		<pcr_amplicon_size>491</pcr_amplicon_size>
		<canonical_amplicon>CATATATTTATATCCAACACGATTGCCCACATCGAGACACAAATGCAACGGATCCGATTCAGGTGGGATTTTTAGGACCATGTATTTGAGCTCAATTATCTCGCTTCTTGTAAGAGATATCAGATTTTTGTCAACTGCTGAAATGTTTTTCTTTAAATTTTGCATATTTTATTAGTTGACAAAACTTTGATATCTTTTACAGAAAGCGAGATACGTGAGCTTAAAGTTTGCGTCATGCTTTTTGAGCGCGGCACCACAATCGTCAATTGTGCTCTAATTTATCTCACTTTCTGTAATCGATATCAAAAAGTGGTAAACTAGTTAGATATAAACTAACAAAATGTGTAGAATTTTATGAAGATCGTTTTGTCAGTTGAAAGATTTTTTTTTGCTTCAAAAGGACCGAAATAAATTACCTCAAAAGCAGTTAGCTTCTCTGCGCCTTCATCCCTGAGCGCAGGCTCCCCAACCATCAATTTTTCTTCAATTTA</canonical_amplicon>
		<polymorphic_amplicon>CATATATTTATATCCAACACGATTGCCCACATCGAGACACAAATGCAACGGATCCGATTCAGGTGGGATTTTTARGACCATGTATTTGAGCTCAATTATCTCGCTTCTTGTAAGAGATATCAGATTTTTGTCAACTGCTGAAATGTTTTTCTTTAAATTTTGCATATTTTATTAGTTGACAAAACTTTGATATCTTTTACAGAAAGCGAGATACGTGAGCTTAAAGTTTGCGTCATGCTTTTTGAGCGCGGCACCACAATCGTCAATTGTGCTCTAATTTATCTCACTTTCTGTAATCGATATCAAAAAGTGGTAAACTAGTTAGATATAAACTAACAAAATGTGTAGAATTTTATGAAGATCGTTTTGTCAGTTGAAAGATTTTTTTTTGCTTCAAAAGGACCGAAATAAATTACCTCAAAAGCAGTTAGCTTCTCTGCGCCTTCATCCCTGAGCGCAGGCTCCCCAACCATCAATTTTTCTTCAATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13451</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>106111</contig_pos>
        <strand>+</strand>
        <context>AAGGAGGAGK[G/T]CGCAGAAATG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATAATTGAAGCCAACGTTGACGACTGGGGTGCCCGCGCTCAAGGAGGAGT</left_flank>
        <right_flank>CGCAGAAATGGTAGAGCGGCTGCTCGTCTGCGTCTTCTTCAAGGTAATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCGACCTTTGGCAATGGATGCCTCTACGAGTAGCTCCTCACAACCAGCAGTAGTTGGTTGGAGAACAGTTGGTTGGGAGCTGTCACAACTCATTTTTTGGTAAGTTTGCTTTGTTCCAGTTTTTTGAAACCTCAACTTTGACCTACATAGACTCTCTAGCTTGGAACGCGGGCTCCGTAGACTTCAATTTTGACCCACTTCGTCTCGATTCCTTCAATAGATATTGAAAAGTTGTCAACAAATCGAATCTTTTTATTTTTCAAGATAAAACGATCCTAACACCTTGAAACCTGCATTTAGAGGGTCTTCACACACTTTCAACTTTAACTTAACTCATCTCGGTTATTTAAGAAGATATAAGAAATTGGTAAAGTAACAAAATGTTTATCATAAAAGTTTGTACATTTTATCAGTAGACTACTTTTTGTTATCTTTCAAAGCAACTGAGATAATTGAAGCCAACGTTGACGACTGGGGTGCCCGCGCTCAAGGAGGAGTTCGCAGAAATGGTAGAGCGGCTGCTCGTCTGCGTCTTCTTCAAGGTAATTTATCTCAGTTACTGTAGAAGATATCAAAAAGTTGTCAACTAACAAAATTTTTATCATAATATCTCCATAATTTTATCAAAAGACTATTTTTTGATAACTCTCACAGGAACCGAGGAAAATAGGGTTTAAGTAGGCCCCTCTCTAAAGTGGCTCTTCTATTTTTTCACTTTTTCAAAAAAAACTGAACCAAATTTAATATTTTTGAATATAAATAATTATTACAAAAATGTTCATCAAACAATACATAAAAAGTAAGATCCTCAAATTTTCAGAACATCTTTAAAATGCTACCCTCCCTCGTGCTCTCCATCCTGCTCTCGGCTCCAATGGCACTGTGCCAAGCGCCCTTCTGGATGCCAAATATGCAACAATTCTCATTTTTGACCGAAACCGACTTTCGAAATGCTCTTCTCTTGCCAACTACAAATACACGACGAGTTAGAAGTCTATT</canonical>
            <polymorphic>CGCGACCTTTGGCAATGGATGCCTCTACGAGTAGCTCCTCACAACCAGCAGTAGTTGGTTGGAGAACAGTTGGTTGGGAGCTGTCACAACTCATTTTTTGGTAAGTTTGCTTTGTTCCAGTTTTTTGAAACCTCAACTTTGACCTACATAGACTCTCTAGCTTGGAACGCGGGCTCCGTAGACTTCAATTTTGACCCACTTCGTCTCGATTCCTTCAATAGATATTGAAAAGTTGTCAACAAATCGAATCTTTTTATTTTTCAAGATAAAACGATCCTAACACCTTGAAACCTGCATTTAGAGGGTCTTCACACACTTTCAACTTTAACTTAACTCATCTCGGTTATTTAAGAAGATATAAGAAATTGGTAAAGTAACAAAATGTTTATCATAAAAGTTTGTACATTTTATCAGTAGACTACTTTTTGTTATCTTTCAAAGCAACTGAGATAATTGAAGCCAACGTTGACGACTGGGGTGCCCGCGCTCAAGGAGGAGTKCGCAGAAATGGTAGAGCGGCTGCTCGTCTGCGTCTTCTTCAAGGTAATTTATCTCAGTTACTGTAGAAGATATCAAAAAGTTGTCAACTAACAAAATTTTTATCATAATATCTCCATAATTTTATCAAAAGACTATTTTTTGATAACTCTCACAGGAACCGAGGAAAATAGGGTTTAAGTAGGCCCCTCTCTAAAGTGGCTCTTCTATTTTTTCACTTTTTCAAAAAAAACTGAACCAAATTTAATATTTTTGAATATAAATAATTATTACAAAAATGTTCATCAAACAATACATAAAAAGTAAGATCCTCAAATTTTCAGAACATCTTTAAAATGCTACCCTCCCTCGTGCTCTCCATCCTGCTCTCGGCTCCAATGGCACTGTGCCAAGCGCCCTTCTGGATGCCAAATATGCAACAATTCTCATTTTTGACCGAAACCGACTTTCGAAATGCTCTTCTCTTGCCAACTACAAATACACGACGAGTTAGAAGTCTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAGATAAAACGATCCTAAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATAGAAGAGCCACTTTAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>453</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAGATAAAACGATCCTAACACCTTGAAACCTGCATTTAGAGGGTCTTCACACACTTTCAACTTTAACTTAACTCATCTCGGTTATTTAAGAAGATATAAGAAATTGGTAAAGTAACAAAATGTTTATCATAAAAGTTTGTACATTTTATCAGTAGACTACTTTTTGTTATCTTTCAAAGCAACTGAGATAATTGAAGCCAACGTTGACGACTGGGGTGCCCGCGCTCAAGGAGGAGTTCGCAGAAATGGTAGAGCGGCTGCTCGTCTGCGTCTTCTTCAAGGTAATTTATCTCAGTTACTGTAGAAGATATCAAAAAGTTGTCAACTAACAAAATTTTTATCATAATATCTCCATAATTTTATCAAAAGACTATTTTTTGATAACTCTCACAGGAACCGAGGAAAATAGGGTTTAAGTAGGCCCCTCTCTAAAGTGGCTCTTCTATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAGATAAAACGATCCTAACACCTTGAAACCTGCATTTAGAGGGTCTTCACACACTTTCAACTTTAACTTAACTCATCTCGGTTATTTAAGAAGATATAAGAAATTGGTAAAGTAACAAAATGTTTATCATAAAAGTTTGTACATTTTATCAGTAGACTACTTTTTGTTATCTTTCAAAGCAACTGAGATAATTGAAGCCAACGTTGACGACTGGGGTGCCCGCGCTCAAGGAGGAGTKCGCAGAAATGGTAGAGCGGCTGCTCGTCTGCGTCTTCTTCAAGGTAATTTATCTCAGTTACTGTAGAAGATATCAAAAAGTTGTCAACTAACAAAATTTTTATCATAATATCTCCATAATTTTATCAAAAGACTATTTTTTGATAACTCTCACAGGAACCGAGGAAAATAGGGTTTAAGTAGGCCCCTCTCTAAAGTGGCTCTTCTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13452</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>106110</contig_pos>
        <strand>+</strand>
        <context>CAAGGAGGAG[G/T]KCGCAGAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATAATTGAAGCCAACGTTGACGACTGGGGTGCCCGCGCTCAAGGAGGAG</left_flank>
        <right_flank>TCGCAGAAATGGTAGAGCGGCTGCTCGTCTGCGTCTTCTTCAAGGTAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGCGACCTTTGGCAATGGATGCCTCTACGAGTAGCTCCTCACAACCAGCAGTAGTTGGTTGGAGAACAGTTGGTTGGGAGCTGTCACAACTCATTTTTTGGTAAGTTTGCTTTGTTCCAGTTTTTTGAAACCTCAACTTTGACCTACATAGACTCTCTAGCTTGGAACGCGGGCTCCGTAGACTTCAATTTTGACCCACTTCGTCTCGATTCCTTCAATAGATATTGAAAAGTTGTCAACAAATCGAATCTTTTTATTTTTCAAGATAAAACGATCCTAACACCTTGAAACCTGCATTTAGAGGGTCTTCACACACTTTCAACTTTAACTTAACTCATCTCGGTTATTTAAGAAGATATAAGAAATTGGTAAAGTAACAAAATGTTTATCATAAAAGTTTGTACATTTTATCAGTAGACTACTTTTTGTTATCTTTCAAAGCAACTGAGATAATTGAAGCCAACGTTGACGACTGGGGTGCCCGCGCTCAAGGAGGAGTTCGCAGAAATGGTAGAGCGGCTGCTCGTCTGCGTCTTCTTCAAGGTAATTTATCTCAGTTACTGTAGAAGATATCAAAAAGTTGTCAACTAACAAAATTTTTATCATAATATCTCCATAATTTTATCAAAAGACTATTTTTTGATAACTCTCACAGGAACCGAGGAAAATAGGGTTTAAGTAGGCCCCTCTCTAAAGTGGCTCTTCTATTTTTTCACTTTTTCAAAAAAAACTGAACCAAATTTAATATTTTTGAATATAAATAATTATTACAAAAATGTTCATCAAACAATACATAAAAAGTAAGATCCTCAAATTTTCAGAACATCTTTAAAATGCTACCCTCCCTCGTGCTCTCCATCCTGCTCTCGGCTCCAATGGCACTGTGCCAAGCGCCCTTCTGGATGCCAAATATGCAACAATTCTCATTTTTGACCGAAACCGACTTTCGAAATGCTCTTCTCTTGCCAACTACAAATACACGACGAGTTAGAAGTCTAT</canonical>
            <polymorphic>GCGCGACCTTTGGCAATGGATGCCTCTACGAGTAGCTCCTCACAACCAGCAGTAGTTGGTTGGAGAACAGTTGGTTGGGAGCTGTCACAACTCATTTTTTGGTAAGTTTGCTTTGTTCCAGTTTTTTGAAACCTCAACTTTGACCTACATAGACTCTCTAGCTTGGAACGCGGGCTCCGTAGACTTCAATTTTGACCCACTTCGTCTCGATTCCTTCAATAGATATTGAAAAGTTGTCAACAAATCGAATCTTTTTATTTTTCAAGATAAAACGATCCTAACACCTTGAAACCTGCATTTAGAGGGTCTTCACACACTTTCAACTTTAACTTAACTCATCTCGGTTATTTAAGAAGATATAAGAAATTGGTAAAGTAACAAAATGTTTATCATAAAAGTTTGTACATTTTATCAGTAGACTACTTTTTGTTATCTTTCAAAGCAACTGAGATAATTGAAGCCAACGTTGACGACTGGGGTGCCCGCGCTCAAGGAGGAGKTCGCAGAAATGGTAGAGCGGCTGCTCGTCTGCGTCTTCTTCAAGGTAATTTATCTCAGTTACTGTAGAAGATATCAAAAAGTTGTCAACTAACAAAATTTTTATCATAATATCTCCATAATTTTATCAAAAGACTATTTTTTGATAACTCTCACAGGAACCGAGGAAAATAGGGTTTAAGTAGGCCCCTCTCTAAAGTGGCTCTTCTATTTTTTCACTTTTTCAAAAAAAACTGAACCAAATTTAATATTTTTGAATATAAATAATTATTACAAAAATGTTCATCAAACAATACATAAAAAGTAAGATCCTCAAATTTTCAGAACATCTTTAAAATGCTACCCTCCCTCGTGCTCTCCATCCTGCTCTCGGCTCCAATGGCACTGTGCCAAGCGCCCTTCTGGATGCCAAATATGCAACAATTCTCATTTTTGACCGAAACCGACTTTCGAAATGCTCTTCTCTTGCCAACTACAAATACACGACGAGTTAGAAGTCTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAGATAAAACGATCCTAAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATAGAAGAGCCACTTTAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>453</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAGATAAAACGATCCTAACACCTTGAAACCTGCATTTAGAGGGTCTTCACACACTTTCAACTTTAACTTAACTCATCTCGGTTATTTAAGAAGATATAAGAAATTGGTAAAGTAACAAAATGTTTATCATAAAAGTTTGTACATTTTATCAGTAGACTACTTTTTGTTATCTTTCAAAGCAACTGAGATAATTGAAGCCAACGTTGACGACTGGGGTGCCCGCGCTCAAGGAGGAGTTCGCAGAAATGGTAGAGCGGCTGCTCGTCTGCGTCTTCTTCAAGGTAATTTATCTCAGTTACTGTAGAAGATATCAAAAAGTTGTCAACTAACAAAATTTTTATCATAATATCTCCATAATTTTATCAAAAGACTATTTTTTGATAACTCTCACAGGAACCGAGGAAAATAGGGTTTAAGTAGGCCCCTCTCTAAAGTGGCTCTTCTATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAGATAAAACGATCCTAACACCTTGAAACCTGCATTTAGAGGGTCTTCACACACTTTCAACTTTAACTTAACTCATCTCGGTTATTTAAGAAGATATAAGAAATTGGTAAAGTAACAAAATGTTTATCATAAAAGTTTGTACATTTTATCAGTAGACTACTTTTTGTTATCTTTCAAAGCAACTGAGATAATTGAAGCCAACGTTGACGACTGGGGTGCCCGCGCTCAAGGAGGAGKTCGCAGAAATGGTAGAGCGGCTGCTCGTCTGCGTCTTCTTCAAGGTAATTTATCTCAGTTACTGTAGAAGATATCAAAAAGTTGTCAACTAACAAAATTTTTATCATAATATCTCCATAATTTTATCAAAAGACTATTTTTTGATAACTCTCACAGGAACCGAGGAAAATAGGGTTTAAGTAGGCCCCTCTCTAAAGTGGCTCTTCTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13453</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>109226</contig_pos>
        <strand></strand>
        <context>GAATTTTCTG[A/T]WGATTATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGCCGAGGAAAAAATTAGGTCATGGGATACTGAAAATGCAGAATTTTCTG</left_flank>
        <right_flank>GGATTATTTTGGTATAAAAATTACTAAAATCGGTTCGGTGGTTCTTGAGA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTGAGAAACTCAAAAAAATAAAAAAATTTTTTTGGAAAAATTTCAAAAAATCAAATTTTGTATTTTTCAATTTTCTCAAAAACTACCGAACCGGATTTTCTGGTTTTCATATCAAAATGATCCTCAGAAATTGAAATATATAAAGTGCGCTCCATTGACAAGTTTTTTATTTTTAGGATTCATTCACGAGCACCAACGTGAGGATCGTGATCAATACGTCTCAATTTTATACCAAAATGTGATTCAAGGTAAGAAAGACATCCGAAAAAACAGACAGACAGACAGAAAATGCTTTTTTCAGGTGCCAACACAGATTTTGATAAGCTGAGCAATTTGGGATTATCGTATTACGGAGAACACTATGATTATACATCTATTATGCATTATGAAGCAAATGAGGGGTCGAGAAATGGGAAAAATACCATTGAGGCGAAGGTAAGGGGGCGTGGCCGAGGAAAAAATTAGGTCATGGGATACTGAAAATGCAGAATTTTCTGAGGATTATTTTGGTATAAAAATTACTAAAATCGGTTCGGTGGTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAACCGATTTTTATGGTTTTTATACCAAAATGATCCTTGAAAAATGCTGCAGTTTTTAATTTTTAACCAATTTTTCCAGAATAATCATTTCACTTCAATTATGGGAAAAGCCAACGACTTCTCCACATCCGACCTTCGTCGAGTGAATCGAGCCTATAAATGCTCCATTTTCTAAATTAGTTTTTTTTGGTTAATTGCTAATTATGATACGTGTAATTTATGAGTCATTAATTACCCTGAAGTTTCCCCCGGTGCTTTTTGTTTGTCTGTACATATTGAAACAATGAATTTTTCCCTACTTTTTTGGACATGCATTTTTAAAAGCTAGTTTTCTCAGAGATGACTTGTTTAATCGCAATGATTAATATACCAAAAT</canonical>
            <polymorphic>ATGTGAGAAACTCAAAAAAATAAAAAAATTTTTTTGGAAAAATTTCAAAAAATCAAATTTTGTATTTTTCAATTTTCTCAAAAACTACCGAACCGGATTTTCTGGTTTTCATATCAAAATGATCCTCAGAAATTGAAATATATAAAGTGCGCTCCATTGACAAGTTTTTTATTTTTAGGATTCATTCACGAGCACCAACGTGAGGATCGTGATCAATACGTCTCAATTTTATACCAAAATGTGATTCAAGGTAAGAAAGACATCCGAAAAAACAGACAGACAGACAGAAAATGCTTTTTTCAGGTGCCAACACAGATTTTGATAAGCTGAGCAATTTGGGATTATCGTATTACGGAGAACACTATGATTATACATCTATTATGCATTATGAAGCAAATGAGGGGTCGAGAAATGGGAAAAATACCATTGAGGCGAAGGTAAGGGGGCGTGGCCGAGGAAAAAATTAGGTCATGGGATACTGAAAATGCAGAATTTTCTGWGGATTATTTTGGTATAAAAATTACTAAAATCGGTTCGGTGGTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAACCGATTTTTATGGTTTTTATACCAAAATGATCCTTGAAAAATGCTGCAGTTTTTAATTTTTAACCAATTTTTCCAGAATAATCATTTCACTTCAATTATGGGAAAAGCCAACGACTTCTCCACATCCGACCTTCGTCGAGTGAATCGAGCCTATAAATGCTCCATTTTCTAAATTAGTTTTTTTTGGTTAATTGCTAATTATGATACGTGTAATTTATGAGTCATTAATTACCCTGAAGTTTCCCCCGGTGCTTTTTGTTTGTCTGTACATATTGAAACAATGAATTTTTCCCTACTTTTTTGGACATGCATTTTTAAAAGCTAGTTTTCTCAGAGATGACTTGTTTAATCGCAATGATTAATATACCAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>460 202 170 125 43</canonical_bands>
                <polymorphic_bands>630 202 125 43</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>256 233 206 137 128 40</canonical_bands>
                <polymorphic_bands>489 206 137 128 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGCATTATGAAGCAAATGAG</pcr_primer_p1>
		<pcr_primer_p2>GTTGACAGGTTTTTGAGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATGCATTATGAAGCAAATGAGGGGTCGAGAAATGGGAAAAATACCATTGAGGCGAAGGTAAGGGGGCGTGGCCGAGGAAAAAATTAGGTCATGGGATACTGAAAATGCAGAATTTTCTGAGGATTATTTTGGTATAAAAATTACTAAAATCGGTTCGGTGGTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAAC</canonical_amplicon>
		<polymorphic_amplicon>TATGCATTATGAAGCAAATGAGGGGTCGAGAAATGGGAAAAATACCATTGAGGCGAAGGTAAGGGGGCGTGGCCGAGGAAAAAATTAGGTCATGGGATACTGAAAATGCAGAATTTTCTGWGGATTATTTTGGTATAAAAATTACTAAAATCGGTTCGGTGGTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13454</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>109249</contig_pos>
        <strand>+</strand>
        <context>TATAAAAATT[A/G]CTAAAATCGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGATACTGAAAATGCAGAATTTTCTGAGGATTATTTTGGTATAAAAATT</left_flank>
        <right_flank>CTAAAATCGGTTCGGTGGTTCTTGAGAACATTGGAAAGTACAAGTTTTGA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATTTTTTTGGAAAAATTTCAAAAAATCAAATTTTGTATTTTTCAATTTTCTCAAAAACTACCGAACCGGATTTTCTGGTTTTCATATCAAAATGATCCTCAGAAATTGAAATATATAAAGTGCGCTCCATTGACAAGTTTTTTATTTTTAGGATTCATTCACGAGCACCAACGTGAGGATCGTGATCAATACGTCTCAATTTTATACCAAAATGTGATTCAAGGTAAGAAAGACATCCGAAAAAACAGACAGACAGACAGAAAATGCTTTTTTCAGGTGCCAACACAGATTTTGATAAGCTGAGCAATTTGGGATTATCGTATTACGGAGAACACTATGATTATACATCTATTATGCATTATGAAGCAAATGAGGGGTCGAGAAATGGGAAAAATACCATTGAGGCGAAGGTAAGGGGGCGTGGCCGAGGAAAAAATTAGGTCATGGGATACTGAAAATGCAGAATTTTCTGAGGATTATTTTGGTATAAAAATTACTAAAATCGGTTCGGTGGTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAACCGATTTTTATGGTTTTTATACCAAAATGATCCTTGAAAAATGCTGCAGTTTTTAATTTTTAACCAATTTTTCCAGAATAATCATTTCACTTCAATTATGGGAAAAGCCAACGACTTCTCCACATCCGACCTTCGTCGAGTGAATCGAGCCTATAAATGCTCCATTTTCTAAATTAGTTTTTTTTGGTTAATTGCTAATTATGATACGTGTAATTTATGAGTCATTAATTACCCTGAAGTTTCCCCCGGTGCTTTTTGTTTGTCTGTACATATTGAAACAATGAATTTTTCCCTACTTTTTTGGACATGCATTTTTAAAAGCTAGTTTTCTCAGAGATGACTTGTTTAATCGCAATGATTAATATACCAAAATAATTGTCTTGAAATTCCAGACAT</canonical>
            <polymorphic>AAAAATTTTTTTGGAAAAATTTCAAAAAATCAAATTTTGTATTTTTCAATTTTCTCAAAAACTACCGAACCGGATTTTCTGGTTTTCATATCAAAATGATCCTCAGAAATTGAAATATATAAAGTGCGCTCCATTGACAAGTTTTTTATTTTTAGGATTCATTCACGAGCACCAACGTGAGGATCGTGATCAATACGTCTCAATTTTATACCAAAATGTGATTCAAGGTAAGAAAGACATCCGAAAAAACAGACAGACAGACAGAAAATGCTTTTTTCAGGTGCCAACACAGATTTTGATAAGCTGAGCAATTTGGGATTATCGTATTACGGAGAACACTATGATTATACATCTATTATGCATTATGAAGCAAATGAGGGGTCGAGAAATGGGAAAAATACCATTGAGGCGAAGGTAAGGGGGCGTGGCCGAGGAAAAAATTAGGTCATGGGATACTGAAAATGCAGAATTTTCTGAGGATTATTTTGGTATAAAAATTRCTAAAATCGGTTCGGTGGTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAACCGATTTTTATGGTTTTTATACCAAAATGATCCTTGAAAAATGCTGCAGTTTTTAATTTTTAACCAATTTTTCCAGAATAATCATTTCACTTCAATTATGGGAAAAGCCAACGACTTCTCCACATCCGACCTTCGTCGAGTGAATCGAGCCTATAAATGCTCCATTTTCTAAATTAGTTTTTTTTGGTTAATTGCTAATTATGATACGTGTAATTTATGAGTCATTAATTACCCTGAAGTTTCCCCCGGTGCTTTTTGTTTGTCTGTACATATTGAAACAATGAATTTTTCCCTACTTTTTTGGACATGCATTTTTAAAAGCTAGTTTTCTCAGAGATGACTTGTTTAATCGCAATGATTAATATACCAAAATAATTGTCTTGAAATTCCAGACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGCATTATGAAGCAAATGAG</pcr_primer_p1>
		<pcr_primer_p2>GTTGACAGGTTTTTGAGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATGCATTATGAAGCAAATGAGGGGTCGAGAAATGGGAAAAATACCATTGAGGCGAAGGTAAGGGGGCGTGGCCGAGGAAAAAATTAGGTCATGGGATACTGAAAATGCAGAATTTTCTGAGGATTATTTTGGTATAAAAATTACTAAAATCGGTTCGGTGGTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAAC</canonical_amplicon>
		<polymorphic_amplicon>TATGCATTATGAAGCAAATGAGGGGTCGAGAAATGGGAAAAATACCATTGAGGCGAAGGTAAGGGGGCGTGGCCGAGGAAAAAATTAGGTCATGGGATACTGAAAATGCAGAATTTTCTGAGGATTATTTTGGTATAAAAATTRCTAAAATCGGTTCGGTGGTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13455</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>109318</contig_pos>
        <strand></strand>
        <context>AAATTTTCCA[G/A]TAATTTTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCA</left_flank>
        <right_flank>TAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAACCGATTTTTATGGTT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGGATTTTCTGGTTTTCATATCAAAATGATCCTCAGAAATTGAAATATATAAAGTGCGCTCCATTGACAAGTTTTTTATTTTTAGGATTCATTCACGAGCACCAACGTGAGGATCGTGATCAATACGTCTCAATTTTATACCAAAATGTGATTCAAGGTAAGAAAGACATCCGAAAAAACAGACAGACAGACAGAAAATGCTTTTTTCAGGTGCCAACACAGATTTTGATAAGCTGAGCAATTTGGGATTATCGTATTACGGAGAACACTATGATTATACATCTATTATGCATTATGAAGCAAATGAGGGGTCGAGAAATGGGAAAAATACCATTGAGGCGAAGGTAAGGGGGCGTGGCCGAGGAAAAAATTAGGTCATGGGATACTGAAAATGCAGAATTTTCTGAGGATTATTTTGGTATAAAAATTACTAAAATCGGTTCGGTGGTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAACCGATTTTTATGGTTTTTATACCAAAATGATCCTTGAAAAATGCTGCAGTTTTTAATTTTTAACCAATTTTTCCAGAATAATCATTTCACTTCAATTATGGGAAAAGCCAACGACTTCTCCACATCCGACCTTCGTCGAGTGAATCGAGCCTATAAATGCTCCATTTTCTAAATTAGTTTTTTTTGGTTAATTGCTAATTATGATACGTGTAATTTATGAGTCATTAATTACCCTGAAGTTTCCCCCGGTGCTTTTTGTTTGTCTGTACATATTGAAACAATGAATTTTTCCCTACTTTTTTGGACATGCATTTTTAAAAGCTAGTTTTCTCAGAGATGACTTGTTTAATCGCAATGATTAATATACCAAAATAATTGTCTTGAAATTCCAGACATTTTAATTCAAAATTCGACTATTTTACCTTAAAATTGAAAACTGAAAATTTGCTCTAAACTTTTAACTCT</canonical>
            <polymorphic>CCGGATTTTCTGGTTTTCATATCAAAATGATCCTCAGAAATTGAAATATATAAAGTGCGCTCCATTGACAAGTTTTTTATTTTTAGGATTCATTCACGAGCACCAACGTGAGGATCGTGATCAATACGTCTCAATTTTATACCAAAATGTGATTCAAGGTAAGAAAGACATCCGAAAAAACAGACAGACAGACAGAAAATGCTTTTTTCAGGTGCCAACACAGATTTTGATAAGCTGAGCAATTTGGGATTATCGTATTACGGAGAACACTATGATTATACATCTATTATGCATTATGAAGCAAATGAGGGGTCGAGAAATGGGAAAAATACCATTGAGGCGAAGGTAAGGGGGCGTGGCCGAGGAAAAAATTAGGTCATGGGATACTGAAAATGCAGAATTTTCTGAGGATTATTTTGGTATAAAAATTACTAAAATCGGTTCGGTGGTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCARTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAACCGATTTTTATGGTTTTTATACCAAAATGATCCTTGAAAAATGCTGCAGTTTTTAATTTTTAACCAATTTTTCCAGAATAATCATTTCACTTCAATTATGGGAAAAGCCAACGACTTCTCCACATCCGACCTTCGTCGAGTGAATCGAGCCTATAAATGCTCCATTTTCTAAATTAGTTTTTTTTGGTTAATTGCTAATTATGATACGTGTAATTTATGAGTCATTAATTACCCTGAAGTTTCCCCCGGTGCTTTTTGTTTGTCTGTACATATTGAAACAATGAATTTTTCCCTACTTTTTTGGACATGCATTTTTAAAAGCTAGTTTTCTCAGAGATGACTTGTTTAATCGCAATGATTAATATACCAAAATAATTGTCTTGAAATTCCAGACATTTTAATTCAAAATTCGACTATTTTACCTTAAAATTGAAAACTGAAAATTTGCTCTAAACTTTTAACTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGGTTCTTGAGAACATTG</pcr_primer_p1>
		<pcr_primer_p2>CATTTATAGGCTCGATTCACTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTGGTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAACCGATTTTTATGGTTTTTATACCAAAATGATCCTTGAAAAATGCTGCAGTTTTTAATTTTTAACCAATTTTTCCAGAATAATCATTTCACTTCAATTATGGGAAAAGCCAACGACTTCTCCACATCCGACCTTCGTCGAGTGAATCGAGCCTATAAATG</canonical_amplicon>
		<polymorphic_amplicon>GGTGGTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCARTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAACCGATTTTTATGGTTTTTATACCAAAATGATCCTTGAAAAATGCTGCAGTTTTTAATTTTTAACCAATTTTTCCAGAATAATCATTTCACTTCAATTATGGGAAAAGCCAACGACTTCTCCACATCCGACCTTCGTCGAGTGAATCGAGCCTATAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13456</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>109402</contig_pos>
        <strand>+</strand>
        <context>AAATGCTGCA[G/T]YTTTTAATYT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACCGATTTTTATGGTTTTTATACCAAAATGATCCTTGAAAAATGCTGCA</left_flank>
        <right_flank>TTTTTAATTTTTAACCAATTTTTCCAGAATAATCATTTCACTTCAATTAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGATTCATTCACGAGCACCAACGTGAGGATCGTGATCAATACGTCTCAATTTTATACCAAAATGTGATTCAAGGTAAGAAAGACATCCGAAAAAACAGACAGACAGACAGAAAATGCTTTTTTCAGGTGCCAACACAGATTTTGATAAGCTGAGCAATTTGGGATTATCGTATTACGGAGAACACTATGATTATACATCTATTATGCATTATGAAGCAAATGAGGGGTCGAGAAATGGGAAAAATACCATTGAGGCGAAGGTAAGGGGGCGTGGCCGAGGAAAAAATTAGGTCATGGGATACTGAAAATGCAGAATTTTCTGAGGATTATTTTGGTATAAAAATTACTAAAATCGGTTCGGTGGTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAACCGATTTTTATGGTTTTTATACCAAAATGATCCTTGAAAAATGCTGCAGTTTTTAATTTTTAACCAATTTTTCCAGAATAATCATTTCACTTCAATTATGGGAAAAGCCAACGACTTCTCCACATCCGACCTTCGTCGAGTGAATCGAGCCTATAAATGCTCCATTTTCTAAATTAGTTTTTTTTGGTTAATTGCTAATTATGATACGTGTAATTTATGAGTCATTAATTACCCTGAAGTTTCCCCCGGTGCTTTTTGTTTGTCTGTACATATTGAAACAATGAATTTTTCCCTACTTTTTTGGACATGCATTTTTAAAAGCTAGTTTTCTCAGAGATGACTTGTTTAATCGCAATGATTAATATACCAAAATAATTGTCTTGAAATTCCAGACATTTTAATTCAAAATTCGACTATTTTACCTTAAAATTGAAAACTGAAAATTTGCTCTAAACTTTTAACTCTTTCTTCTGCTGTTCTTTCAATTTTTCTCTAGAACCAGTTGCTCAATTTTTTTGGTTTTTACACTAAAACAAAGGAAATTTGAAG</canonical>
            <polymorphic>AGGATTCATTCACGAGCACCAACGTGAGGATCGTGATCAATACGTCTCAATTTTATACCAAAATGTGATTCAAGGTAAGAAAGACATCCGAAAAAACAGACAGACAGACAGAAAATGCTTTTTTCAGGTGCCAACACAGATTTTGATAAGCTGAGCAATTTGGGATTATCGTATTACGGAGAACACTATGATTATACATCTATTATGCATTATGAAGCAAATGAGGGGTCGAGAAATGGGAAAAATACCATTGAGGCGAAGGTAAGGGGGCGTGGCCGAGGAAAAAATTAGGTCATGGGATACTGAAAATGCAGAATTTTCTGAGGATTATTTTGGTATAAAAATTACTAAAATCGGTTCGGTGGTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAACCGATTTTTATGGTTTTTATACCAAAATGATCCTTGAAAAATGCTGCAKTTTTTAATTTTTAACCAATTTTTCCAGAATAATCATTTCACTTCAATTATGGGAAAAGCCAACGACTTCTCCACATCCGACCTTCGTCGAGTGAATCGAGCCTATAAATGCTCCATTTTCTAAATTAGTTTTTTTTGGTTAATTGCTAATTATGATACGTGTAATTTATGAGTCATTAATTACCCTGAAGTTTCCCCCGGTGCTTTTTGTTTGTCTGTACATATTGAAACAATGAATTTTTCCCTACTTTTTTGGACATGCATTTTTAAAAGCTAGTTTTCTCAGAGATGACTTGTTTAATCGCAATGATTAATATACCAAAATAATTGTCTTGAAATTCCAGACATTTTAATTCAAAATTCGACTATTTTACCTTAAAATTGAAAACTGAAAATTTGCTCTAAACTTTTAACTCTTTCTTCTGCTGTTCTTTCAATTTTTCTCTAGAACCAGTTGCTCAATTTTTTTGGTTTTTACACTAAAACAAAGGAAATTTGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTGCAG</site>
                <isoschizomers>
                    <enzyme>BloHII</enzyme>
                    <enzyme>BstMAI</enzyme>
                    <enzyme>PstI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCTTGAGAACATTGGAAAGTA</pcr_primer_p1>
		<pcr_primer_p2>CATTTATAGGCTCGATTCACTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAACCGATTTTTATGGTTTTTATACCAAAATGATCCTTGAAAAATGCTGCAGTTTTTAATTTTTAACCAATTTTTCCAGAATAATCATTTCACTTCAATTATGGGAAAAGCCAACGACTTCTCCACATCCGACCTTCGTCGAGTGAATCGAGCCTATAAATG</canonical_amplicon>
		<polymorphic_amplicon>GTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAACCGATTTTTATGGTTTTTATACCAAAATGATCCTTGAAAAATGCTGCAKTTTTTAATTTTTAACCAATTTTTCCAGAATAATCATTTCACTTCAATTATGGGAAAAGCCAACGACTTCTCCACATCCGACCTTCGTCGAGTGAATCGAGCCTATAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13457</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>109403</contig_pos>
        <strand>+</strand>
        <context>AATGCTGCAK[C/T]TTTTAATYTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCGATTTTTATGGTTTTTATACCAAAATGATCCTTGAAAAATGCTGCAG</left_flank>
        <right_flank>TTTTAATTTTTAACCAATTTTTCCAGAATAATCATTTCACTTCAATTATG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATTCATTCACGAGCACCAACGTGAGGATCGTGATCAATACGTCTCAATTTTATACCAAAATGTGATTCAAGGTAAGAAAGACATCCGAAAAAACAGACAGACAGACAGAAAATGCTTTTTTCAGGTGCCAACACAGATTTTGATAAGCTGAGCAATTTGGGATTATCGTATTACGGAGAACACTATGATTATACATCTATTATGCATTATGAAGCAAATGAGGGGTCGAGAAATGGGAAAAATACCATTGAGGCGAAGGTAAGGGGGCGTGGCCGAGGAAAAAATTAGGTCATGGGATACTGAAAATGCAGAATTTTCTGAGGATTATTTTGGTATAAAAATTACTAAAATCGGTTCGGTGGTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAACCGATTTTTATGGTTTTTATACCAAAATGATCCTTGAAAAATGCTGCAGTTTTTAATTTTTAACCAATTTTTCCAGAATAATCATTTCACTTCAATTATGGGAAAAGCCAACGACTTCTCCACATCCGACCTTCGTCGAGTGAATCGAGCCTATAAATGCTCCATTTTCTAAATTAGTTTTTTTTGGTTAATTGCTAATTATGATACGTGTAATTTATGAGTCATTAATTACCCTGAAGTTTCCCCCGGTGCTTTTTGTTTGTCTGTACATATTGAAACAATGAATTTTTCCCTACTTTTTTGGACATGCATTTTTAAAAGCTAGTTTTCTCAGAGATGACTTGTTTAATCGCAATGATTAATATACCAAAATAATTGTCTTGAAATTCCAGACATTTTAATTCAAAATTCGACTATTTTACCTTAAAATTGAAAACTGAAAATTTGCTCTAAACTTTTAACTCTTTCTTCTGCTGTTCTTTCAATTTTTCTCTAGAACCAGTTGCTCAATTTTTTTGGTTTTTACACTAAAACAAAGGAAATTTGAAGA</canonical>
            <polymorphic>GGATTCATTCACGAGCACCAACGTGAGGATCGTGATCAATACGTCTCAATTTTATACCAAAATGTGATTCAAGGTAAGAAAGACATCCGAAAAAACAGACAGACAGACAGAAAATGCTTTTTTCAGGTGCCAACACAGATTTTGATAAGCTGAGCAATTTGGGATTATCGTATTACGGAGAACACTATGATTATACATCTATTATGCATTATGAAGCAAATGAGGGGTCGAGAAATGGGAAAAATACCATTGAGGCGAAGGTAAGGGGGCGTGGCCGAGGAAAAAATTAGGTCATGGGATACTGAAAATGCAGAATTTTCTGAGGATTATTTTGGTATAAAAATTACTAAAATCGGTTCGGTGGTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAACCGATTTTTATGGTTTTTATACCAAAATGATCCTTGAAAAATGCTGCAGYTTTTAATTTTTAACCAATTTTTCCAGAATAATCATTTCACTTCAATTATGGGAAAAGCCAACGACTTCTCCACATCCGACCTTCGTCGAGTGAATCGAGCCTATAAATGCTCCATTTTCTAAATTAGTTTTTTTTGGTTAATTGCTAATTATGATACGTGTAATTTATGAGTCATTAATTACCCTGAAGTTTCCCCCGGTGCTTTTTGTTTGTCTGTACATATTGAAACAATGAATTTTTCCCTACTTTTTTGGACATGCATTTTTAAAAGCTAGTTTTCTCAGAGATGACTTGTTTAATCGCAATGATTAATATACCAAAATAATTGTCTTGAAATTCCAGACATTTTAATTCAAAATTCGACTATTTTACCTTAAAATTGAAAACTGAAAATTTGCTCTAAACTTTTAACTCTTTCTTCTGCTGTTCTTTCAATTTTTCTCTAGAACCAGTTGCTCAATTTTTTTGGTTTTTACACTAAAACAAAGGAAATTTGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCTTGAGAACATTGGAAAGTA</pcr_primer_p1>
		<pcr_primer_p2>CATTTATAGGCTCGATTCACTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAACCGATTTTTATGGTTTTTATACCAAAATGATCCTTGAAAAATGCTGCAGTTTTTAATTTTTAACCAATTTTTCCAGAATAATCATTTCACTTCAATTATGGGAAAAGCCAACGACTTCTCCACATCCGACCTTCGTCGAGTGAATCGAGCCTATAAATG</canonical_amplicon>
		<polymorphic_amplicon>GTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAACCGATTTTTATGGTTTTTATACCAAAATGATCCTTGAAAAATGCTGCAGYTTTTAATTTTTAACCAATTTTTCCAGAATAATCATTTCACTTCAATTATGGGAAAAGCCAACGACTTCTCCACATCCGACCTTCGTCGAGTGAATCGAGCCTATAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13460</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>263924</contig_pos>
        <strand>+</strand>
        <context>GCMTATTTTT[G/T]RYCTGAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTT</left_flank>
        <right_flank>ACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGAAAAAAAACCTGAAAAAACCTCAGAAATGCGGCTTTTTGAGTCAAAATCTCTCGAAAATCGCGTTTTTTACACTAAAAATGGTTCAAAAAAGCCAAAAATAACACTTTTCGGGTCAAAATCCTTCAAAATCGCCAATTTCCCATCAAAAAACAGCTCAAAAACTCACGATCAATGCAAAATTTGTTCAAAGGCAGCGCTGCATTCTTGCACTTCTCCTCGGGGACCGAAATCGGTGTTGAACCACATACTTTCGCTAGAAGACTGTGAATAACGTGATTGATGACTTGTTGATCGTCCATTTCGGGTCCAACACAGCATGGCTTGAATACCGGGTCCGTTGTCTGGAAATTGCGTTTTTTTAGAGTTTAGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTTGGTCGATTTTTGTGAATTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGATAATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTGGGTCAATTTTACTAATTTTTGGGTCATTTTCCATGGAATCTAGGTCAAATTTTACGATTTTTG</canonical>
            <polymorphic>CTTGAAAAAAAACCTGAAAAAACCTCAGAAATGCGGCTTTTTGAGTCAAAATCTCTCGAAAATCGCGTTTTTTACACTAAAAATGGTTCAAAAAAGCCAAAAATAACACTTTTCGGGTCAAAATCCTTCAAAATCGCCAATTTCCCATCAAAAAACAGCTCAAAAACTCACGATCAATGCAAAATTTGTTCAAAGGCAGCGCTGCATTCTTGCACTTCTCCTCGGGGACCGAAATCGGTGTTGAACCACATACTTTCGCTAGAAGACTGTGAATAACGTGATTGATGACTTGTTGATCGTCCATTTCGGGTCCAACACAGCATGGCTTGAATACCGGGTCCGTTGTCTGGAAATTGCGTTTTTTTAGAGTTTAGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTKACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTTGGTCGATTTTTGTGAATTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGATAATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTGGGTCAATTTTACTAATTTTTGGGTCATTTTCCATGGAATCTAGGTCAAATTTTACGATTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCATCAATAAATGAAGAATTTG</pcr_primer_p1>
		<pcr_primer_p2>ATGCTAAAAATCTCAAAAATGTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCAT</canonical_amplicon>
		<polymorphic_amplicon>AGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTKACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13464</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>264119</contig_pos>
        <strand>+</strand>
        <context>AAACCTCGAT[C/T]TCTGGGGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGAT</left_flank>
        <right_flank>TCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAGCGCTGCATTCTTGCACTTCTCCTCGGGGACCGAAATCGGTGTTGAACCACATACTTTCGCTAGAAGACTGTGAATAACGTGATTGATGACTTGTTGATCGTCCATTTCGGGTCCAACACAGCATGGCTTGAATACCGGGTCCGTTGTCTGGAAATTGCGTTTTTTTAGAGTTTAGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTTGGTCGATTTTTGTGAATTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGATAATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTGGGTCAATTTTACTAATTTTTGGGTCATTTTCCATGGAATCTAGGTCAAATTTTACGATTTTTGGATCAATTTTTGGAATTTTAGAGTATTTTCACTGAACTTTTCAGTGAAAAATGAAAATTTGGACCATTTTTAGGCGAATTTTTCTCTTATTTTAAAGCCAATTTTAGTGATTTTAAGGTAATTTCACTGATTTTTGATGTCATTTTGAGCAATTTAAGACATTTTTCAAGTGGATTTTAGTTCATTTTTGGTCAA</canonical>
            <polymorphic>GCAGCGCTGCATTCTTGCACTTCTCCTCGGGGACCGAAATCGGTGTTGAACCACATACTTTCGCTAGAAGACTGTGAATAACGTGATTGATGACTTGTTGATCGTCCATTTCGGGTCCAACACAGCATGGCTTGAATACCGGGTCCGTTGTCTGGAAATTGCGTTTTTTTAGAGTTTAGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATYTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTTGGTCGATTTTTGTGAATTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGATAATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTGGGTCAATTTTACTAATTTTTGGGTCATTTTCCATGGAATCTAGGTCAAATTTTACGATTTTTGGATCAATTTTTGGAATTTTAGAGTATTTTCACTGAACTTTTCAGTGAAAAATGAAAATTTGGACCATTTTTAGGCGAATTTTTCTCTTATTTTAAAGCCAATTTTAGTGATTTTAAGGTAATTTCACTGATTTTTGATGTCATTTTGAGCAATTTAAGACATTTTTCAAGTGGATTTTAGTTCATTTTTGGTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGTCTGGAAATAACCTTTTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATCACCTAAAATCGTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATYTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13465</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>264076</contig_pos>
        <strand>+</strand>
        <context>ATTTCGACTA[C/T]TTTTGACCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTA</left_flank>
        <right_flank>TTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACAGCTCAAAAACTCACGATCAATGCAAAATTTGTTCAAAGGCAGCGCTGCATTCTTGCACTTCTCCTCGGGGACCGAAATCGGTGTTGAACCACATACTTTCGCTAGAAGACTGTGAATAACGTGATTGATGACTTGTTGATCGTCCATTTCGGGTCCAACACAGCATGGCTTGAATACCGGGTCCGTTGTCTGGAAATTGCGTTTTTTTAGAGTTTAGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTTGGTCGATTTTTGTGAATTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGATAATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTGGGTCAATTTTACTAATTTTTGGGTCATTTTCCATGGAATCTAGGTCAAATTTTACGATTTTTGGATCAATTTTTGGAATTTTAGAGTATTTTCACTGAACTTTTCAGTGAAAAATGAAAATTTGGACCATTTTTAGGCGAATTTTTCTCTTATTTTAAAGCCAATTTTAGTGATTTTAAGGTAATTTCACTGATTTTTGATGTCATTTTGAGCAA</canonical>
            <polymorphic>AAACAGCTCAAAAACTCACGATCAATGCAAAATTTGTTCAAAGGCAGCGCTGCATTCTTGCACTTCTCCTCGGGGACCGAAATCGGTGTTGAACCACATACTTTCGCTAGAAGACTGTGAATAACGTGATTGATGACTTGTTGATCGTCCATTTCGGGTCCAACACAGCATGGCTTGAATACCGGGTCCGTTGTCTGGAAATTGCGTTTTTTTAGAGTTTAGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTAYTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTTGGTCGATTTTTGTGAATTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGATAATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTGGGTCAATTTTACTAATTTTTGGGTCATTTTCCATGGAATCTAGGTCAAATTTTACGATTTTTGGATCAATTTTTGGAATTTTAGAGTATTTTCACTGAACTTTTCAGTGAAAAATGAAAATTTGGACCATTTTTAGGCGAATTTTTCTCTTATTTTAAAGCCAATTTTAGTGATTTTAAGGTAATTTCACTGATTTTTGATGTCATTTTGAGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGTCTGGAAATAACCTTTTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATCACCTAAAATCGTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTAYTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13466</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>263935</contig_pos>
        <strand>+</strand>
        <context>RYCTGAAAAT[G/T]GCATTTTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAAT</left_flank>
        <right_flank>GCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTGAAAAAACCTCAGAAATGCGGCTTTTTGAGTCAAAATCTCTCGAAAATCGCGTTTTTTACACTAAAAATGGTTCAAAAAAGCCAAAAATAACACTTTTCGGGTCAAAATCCTTCAAAATCGCCAATTTCCCATCAAAAAACAGCTCAAAAACTCACGATCAATGCAAAATTTGTTCAAAGGCAGCGCTGCATTCTTGCACTTCTCCTCGGGGACCGAAATCGGTGTTGAACCACATACTTTCGCTAGAAGACTGTGAATAACGTGATTGATGACTTGTTGATCGTCCATTTCGGGTCCAACACAGCATGGCTTGAATACCGGGTCCGTTGTCTGGAAATTGCGTTTTTTTAGAGTTTAGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTTGGTCGATTTTTGTGAATTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGATAATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTGGGTCAATTTTACTAATTTTTGGGTCATTTTCCATGGAATCTAGGTCAAATTTTACGATTTTTGGATCAATTTTT</canonical>
            <polymorphic>ACCTGAAAAAACCTCAGAAATGCGGCTTTTTGAGTCAAAATCTCTCGAAAATCGCGTTTTTTACACTAAAAATGGTTCAAAAAAGCCAAAAATAACACTTTTCGGGTCAAAATCCTTCAAAATCGCCAATTTCCCATCAAAAAACAGCTCAAAAACTCACGATCAATGCAAAATTTGTTCAAAGGCAGCGCTGCATTCTTGCACTTCTCCTCGGGGACCGAAATCGGTGTTGAACCACATACTTTCGCTAGAAGACTGTGAATAACGTGATTGATGACTTGTTGATCGTCCATTTCGGGTCCAACACAGCATGGCTTGAATACCGGGTCCGTTGTCTGGAAATTGCGTTTTTTTAGAGTTTAGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATKGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTTGGTCGATTTTTGTGAATTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGATAATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTGGGTCAATTTTACTAATTTTTGGGTCATTTTCCATGGAATCTAGGTCAAATTTTACGATTTTTGGATCAATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>419 335 162 84</canonical_bands>
                <polymorphic_bands>419 335 246</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCATCAATAAATGAAGAATTTG</pcr_primer_p1>
		<pcr_primer_p2>ATGCTAAAAATCTCAAAAATGTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCAT</canonical_amplicon>
		<polymorphic_amplicon>AGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATKGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13467</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>263926</contig_pos>
        <strand>+</strand>
        <context>MTATTTTTKR[C/T]CTGAAAATKG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTA</left_flank>
        <right_flank>CTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAAAAAAACCTGAAAAAACCTCAGAAATGCGGCTTTTTGAGTCAAAATCTCTCGAAAATCGCGTTTTTTACACTAAAAATGGTTCAAAAAAGCCAAAAATAACACTTTTCGGGTCAAAATCCTTCAAAATCGCCAATTTCCCATCAAAAAACAGCTCAAAAACTCACGATCAATGCAAAATTTGTTCAAAGGCAGCGCTGCATTCTTGCACTTCTCCTCGGGGACCGAAATCGGTGTTGAACCACATACTTTCGCTAGAAGACTGTGAATAACGTGATTGATGACTTGTTGATCGTCCATTTCGGGTCCAACACAGCATGGCTTGAATACCGGGTCCGTTGTCTGGAAATTGCGTTTTTTTAGAGTTTAGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTTGGTCGATTTTTGTGAATTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGATAATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTGGGTCAATTTTACTAATTTTTGGGTCATTTTCCATGGAATCTAGGTCAAATTTTACGATTTTTGGA</canonical>
            <polymorphic>TGAAAAAAAACCTGAAAAAACCTCAGAAATGCGGCTTTTTGAGTCAAAATCTCTCGAAAATCGCGTTTTTTACACTAAAAATGGTTCAAAAAAGCCAAAAATAACACTTTTCGGGTCAAAATCCTTCAAAATCGCCAATTTCCCATCAAAAAACAGCTCAAAAACTCACGATCAATGCAAAATTTGTTCAAAGGCAGCGCTGCATTCTTGCACTTCTCCTCGGGGACCGAAATCGGTGTTGAACCACATACTTTCGCTAGAAGACTGTGAATAACGTGATTGATGACTTGTTGATCGTCCATTTCGGGTCCAACACAGCATGGCTTGAATACCGGGTCCGTTGTCTGGAAATTGCGTTTTTTTAGAGTTTAGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTAYCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTTGGTCGATTTTTGTGAATTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGATAATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTGGGTCAATTTTACTAATTTTTGGGTCATTTTCCATGGAATCTAGGTCAAATTTTACGATTTTTGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>410 344 162 84</canonical_bands>
                <polymorphic_bands>410 344 246</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCATCAATAAATGAAGAATTTG</pcr_primer_p1>
		<pcr_primer_p2>ATGCTAAAAATCTCAAAAATGTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCAT</canonical_amplicon>
		<polymorphic_amplicon>AGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTAYCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13468</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>263925</contig_pos>
        <strand>+</strand>
        <context>CMTATTTTTK[A/G]YCTGAAAATK</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTT</left_flank>
        <right_flank>CCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAAAAAAACCTGAAAAAACCTCAGAAATGCGGCTTTTTGAGTCAAAATCTCTCGAAAATCGCGTTTTTTACACTAAAAATGGTTCAAAAAAGCCAAAAATAACACTTTTCGGGTCAAAATCCTTCAAAATCGCCAATTTCCCATCAAAAAACAGCTCAAAAACTCACGATCAATGCAAAATTTGTTCAAAGGCAGCGCTGCATTCTTGCACTTCTCCTCGGGGACCGAAATCGGTGTTGAACCACATACTTTCGCTAGAAGACTGTGAATAACGTGATTGATGACTTGTTGATCGTCCATTTCGGGTCCAACACAGCATGGCTTGAATACCGGGTCCGTTGTCTGGAAATTGCGTTTTTTTAGAGTTTAGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTTGGTCGATTTTTGTGAATTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGATAATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTGGGTCAATTTTACTAATTTTTGGGTCATTTTCCATGGAATCTAGGTCAAATTTTACGATTTTTGG</canonical>
            <polymorphic>TTGAAAAAAAACCTGAAAAAACCTCAGAAATGCGGCTTTTTGAGTCAAAATCTCTCGAAAATCGCGTTTTTTACACTAAAAATGGTTCAAAAAAGCCAAAAATAACACTTTTCGGGTCAAAATCCTTCAAAATCGCCAATTTCCCATCAAAAAACAGCTCAAAAACTCACGATCAATGCAAAATTTGTTCAAAGGCAGCGCTGCATTCTTGCACTTCTCCTCGGGGACCGAAATCGGTGTTGAACCACATACTTTCGCTAGAAGACTGTGAATAACGTGATTGATGACTTGTTGATCGTCCATTTCGGGTCCAACACAGCATGGCTTGAATACCGGGTCCGTTGTCTGGAAATTGCGTTTTTTTAGAGTTTAGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTRCCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTTGGTCGATTTTTGTGAATTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGATAATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTGGGTCAATTTTACTAATTTTTGGGTCATTTTCCATGGAATCTAGGTCAAATTTTACGATTTTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCATCAATAAATGAAGAATTTG</pcr_primer_p1>
		<pcr_primer_p2>ATGCTAAAAATCTCAAAAATGTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCAT</canonical_amplicon>
		<polymorphic_amplicon>AGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTRCCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13470</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>263916</contig_pos>
        <strand>+</strand>
        <context>GCAATTYCGC[A/C]TATTTTTKRY</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGC</left_flank>
        <right_flank>TATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTAAACTTGAAAAAAAACCTGAAAAAACCTCAGAAATGCGGCTTTTTGAGTCAAAATCTCTCGAAAATCGCGTTTTTTACACTAAAAATGGTTCAAAAAAGCCAAAAATAACACTTTTCGGGTCAAAATCCTTCAAAATCGCCAATTTCCCATCAAAAAACAGCTCAAAAACTCACGATCAATGCAAAATTTGTTCAAAGGCAGCGCTGCATTCTTGCACTTCTCCTCGGGGACCGAAATCGGTGTTGAACCACATACTTTCGCTAGAAGACTGTGAATAACGTGATTGATGACTTGTTGATCGTCCATTTCGGGTCCAACACAGCATGGCTTGAATACCGGGTCCGTTGTCTGGAAATTGCGTTTTTTTAGAGTTTAGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTTGGTCGATTTTTGTGAATTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGATAATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTGGGTCAATTTTACTAATTTTTGGGTCATTTTCCATGGAATCTAGGTCAAATTTTAC</canonical>
            <polymorphic>ATTTTAAACTTGAAAAAAAACCTGAAAAAACCTCAGAAATGCGGCTTTTTGAGTCAAAATCTCTCGAAAATCGCGTTTTTTACACTAAAAATGGTTCAAAAAAGCCAAAAATAACACTTTTCGGGTCAAAATCCTTCAAAATCGCCAATTTCCCATCAAAAAACAGCTCAAAAACTCACGATCAATGCAAAATTTGTTCAAAGGCAGCGCTGCATTCTTGCACTTCTCCTCGGGGACCGAAATCGGTGTTGAACCACATACTTTCGCTAGAAGACTGTGAATAACGTGATTGATGACTTGTTGATCGTCCATTTCGGGTCCAACACAGCATGGCTTGAATACCGGGTCCGTTGTCTGGAAATTGCGTTTTTTTAGAGTTTAGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCMTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTTGGTCGATTTTTGTGAATTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGATAATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTGGGTCAATTTTACTAATTTTTGGGTCATTTTCCATGGAATCTAGGTCAAATTTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCATCAATAAATGAAGAATTTG</pcr_primer_p1>
		<pcr_primer_p2>ATGCTAAAAATCTCAAAAATGTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCAT</canonical_amplicon>
		<polymorphic_amplicon>AGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCMTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13471</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>263912</contig_pos>
        <strand>+</strand>
        <context>ATGAGCAATT[C/T]CGCMTATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATT</left_flank>
        <right_flank>CGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCGATTTTAAACTTGAAAAAAAACCTGAAAAAACCTCAGAAATGCGGCTTTTTGAGTCAAAATCTCTCGAAAATCGCGTTTTTTACACTAAAAATGGTTCAAAAAAGCCAAAAATAACACTTTTCGGGTCAAAATCCTTCAAAATCGCCAATTTCCCATCAAAAAACAGCTCAAAAACTCACGATCAATGCAAAATTTGTTCAAAGGCAGCGCTGCATTCTTGCACTTCTCCTCGGGGACCGAAATCGGTGTTGAACCACATACTTTCGCTAGAAGACTGTGAATAACGTGATTGATGACTTGTTGATCGTCCATTTCGGGTCCAACACAGCATGGCTTGAATACCGGGTCCGTTGTCTGGAAATTGCGTTTTTTTAGAGTTTAGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTTGGTCGATTTTTGTGAATTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGATAATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTGGGTCAATTTTACTAATTTTTGGGTCATTTTCCATGGAATCTAGGTCAAATT</canonical>
            <polymorphic>CGCGATTTTAAACTTGAAAAAAAACCTGAAAAAACCTCAGAAATGCGGCTTTTTGAGTCAAAATCTCTCGAAAATCGCGTTTTTTACACTAAAAATGGTTCAAAAAAGCCAAAAATAACACTTTTCGGGTCAAAATCCTTCAAAATCGCCAATTTCCCATCAAAAAACAGCTCAAAAACTCACGATCAATGCAAAATTTGTTCAAAGGCAGCGCTGCATTCTTGCACTTCTCCTCGGGGACCGAAATCGGTGTTGAACCACATACTTTCGCTAGAAGACTGTGAATAACGTGATTGATGACTTGTTGATCGTCCATTTCGGGTCCAACACAGCATGGCTTGAATACCGGGTCCGTTGTCTGGAAATTGCGTTTTTTTAGAGTTTAGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTYCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTTGGTCGATTTTTGTGAATTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGATAATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTGGGTCAATTTTACTAATTTTTGGGTCATTTTCCATGGAATCTAGGTCAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCATCAATAAATGAAGAATTTG</pcr_primer_p1>
		<pcr_primer_p2>ATGCTAAAAATCTCAAAAATGTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCAT</canonical_amplicon>
		<polymorphic_amplicon>AGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTYCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13472</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>263901</contig_pos>
        <strand>+</strand>
        <context>TCRGCYTMAW[A/C]ATGAGCAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAA</left_flank>
        <right_flank>ATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCAAAATCGCGCGATTTTAAACTTGAAAAAAAACCTGAAAAAACCTCAGAAATGCGGCTTTTTGAGTCAAAATCTCTCGAAAATCGCGTTTTTTACACTAAAAATGGTTCAAAAAAGCCAAAAATAACACTTTTCGGGTCAAAATCCTTCAAAATCGCCAATTTCCCATCAAAAAACAGCTCAAAAACTCACGATCAATGCAAAATTTGTTCAAAGGCAGCGCTGCATTCTTGCACTTCTCCTCGGGGACCGAAATCGGTGTTGAACCACATACTTTCGCTAGAAGACTGTGAATAACGTGATTGATGACTTGTTGATCGTCCATTTCGGGTCCAACACAGCATGGCTTGAATACCGGGTCCGTTGTCTGGAAATTGCGTTTTTTTAGAGTTTAGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTTGGTCGATTTTTGTGAATTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGATAATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTGGGTCAATTTTACTAATTTTTGGGTCATTTTCCATGGAATC</canonical>
            <polymorphic>ACTCAAAATCGCGCGATTTTAAACTTGAAAAAAAACCTGAAAAAACCTCAGAAATGCGGCTTTTTGAGTCAAAATCTCTCGAAAATCGCGTTTTTTACACTAAAAATGGTTCAAAAAAGCCAAAAATAACACTTTTCGGGTCAAAATCCTTCAAAATCGCCAATTTCCCATCAAAAAACAGCTCAAAAACTCACGATCAATGCAAAATTTGTTCAAAGGCAGCGCTGCATTCTTGCACTTCTCCTCGGGGACCGAAATCGGTGTTGAACCACATACTTTCGCTAGAAGACTGTGAATAACGTGATTGATGACTTGTTGATCGTCCATTTCGGGTCCAACACAGCATGGCTTGAATACCGGGTCCGTTGTCTGGAAATTGCGTTTTTTTAGAGTTTAGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAAMATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTTGGTCGATTTTTGTGAATTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGATAATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTGGGTCAATTTTACTAATTTTTGGGTCATTTTCCATGGAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>435 344 156 57 8</canonical_bands>
                <polymorphic_bands>435 344 213 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCATCAATAAATGAAGAATTTG</pcr_primer_p1>
		<pcr_primer_p2>ATGCTAAAAATCTCAAAAATGTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCAT</canonical_amplicon>
		<polymorphic_amplicon>AGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAAMATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13473</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>263900</contig_pos>
        <strand>+</strand>
        <context>TTCRGCYTMA[A/T]MATGAGCAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAA</left_flank>
        <right_flank>CATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTCAAAATCGCGCGATTTTAAACTTGAAAAAAAACCTGAAAAAACCTCAGAAATGCGGCTTTTTGAGTCAAAATCTCTCGAAAATCGCGTTTTTTACACTAAAAATGGTTCAAAAAAGCCAAAAATAACACTTTTCGGGTCAAAATCCTTCAAAATCGCCAATTTCCCATCAAAAAACAGCTCAAAAACTCACGATCAATGCAAAATTTGTTCAAAGGCAGCGCTGCATTCTTGCACTTCTCCTCGGGGACCGAAATCGGTGTTGAACCACATACTTTCGCTAGAAGACTGTGAATAACGTGATTGATGACTTGTTGATCGTCCATTTCGGGTCCAACACAGCATGGCTTGAATACCGGGTCCGTTGTCTGGAAATTGCGTTTTTTTAGAGTTTAGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTTGGTCGATTTTTGTGAATTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGATAATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTGGGTCAATTTTACTAATTTTTGGGTCATTTTCCATGGAAT</canonical>
            <polymorphic>GACTCAAAATCGCGCGATTTTAAACTTGAAAAAAAACCTGAAAAAACCTCAGAAATGCGGCTTTTTGAGTCAAAATCTCTCGAAAATCGCGTTTTTTACACTAAAAATGGTTCAAAAAAGCCAAAAATAACACTTTTCGGGTCAAAATCCTTCAAAATCGCCAATTTCCCATCAAAAAACAGCTCAAAAACTCACGATCAATGCAAAATTTGTTCAAAGGCAGCGCTGCATTCTTGCACTTCTCCTCGGGGACCGAAATCGGTGTTGAACCACATACTTTCGCTAGAAGACTGTGAATAACGTGATTGATGACTTGTTGATCGTCCATTTCGGGTCCAACACAGCATGGCTTGAATACCGGGTCCGTTGTCTGGAAATTGCGTTTTTTTAGAGTTTAGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAWCATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTTGGTCGATTTTTGTGAATTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGATAATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTGGGTCAATTTTACTAATTTTTGGGTCATTTTCCATGGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCATCAATAAATGAAGAATTTG</pcr_primer_p1>
		<pcr_primer_p2>ATGCTAAAAATCTCAAAAATGTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCAT</canonical_amplicon>
		<polymorphic_amplicon>AGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAWCATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13474</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>263898</contig_pos>
        <strand>+</strand>
        <context>TTTTCRGCYT[A/C]AWMATGAGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCT</left_flank>
        <right_flank>AACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGACTCAAAATCGCGCGATTTTAAACTTGAAAAAAAACCTGAAAAAACCTCAGAAATGCGGCTTTTTGAGTCAAAATCTCTCGAAAATCGCGTTTTTTACACTAAAAATGGTTCAAAAAAGCCAAAAATAACACTTTTCGGGTCAAAATCCTTCAAAATCGCCAATTTCCCATCAAAAAACAGCTCAAAAACTCACGATCAATGCAAAATTTGTTCAAAGGCAGCGCTGCATTCTTGCACTTCTCCTCGGGGACCGAAATCGGTGTTGAACCACATACTTTCGCTAGAAGACTGTGAATAACGTGATTGATGACTTGTTGATCGTCCATTTCGGGTCCAACACAGCATGGCTTGAATACCGGGTCCGTTGTCTGGAAATTGCGTTTTTTTAGAGTTTAGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTTGGTCGATTTTTGTGAATTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGATAATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTGGGTCAATTTTACTAATTTTTGGGTCATTTTCCATGGA</canonical>
            <polymorphic>CAGACTCAAAATCGCGCGATTTTAAACTTGAAAAAAAACCTGAAAAAACCTCAGAAATGCGGCTTTTTGAGTCAAAATCTCTCGAAAATCGCGTTTTTTACACTAAAAATGGTTCAAAAAAGCCAAAAATAACACTTTTCGGGTCAAAATCCTTCAAAATCGCCAATTTCCCATCAAAAAACAGCTCAAAAACTCACGATCAATGCAAAATTTGTTCAAAGGCAGCGCTGCATTCTTGCACTTCTCCTCGGGGACCGAAATCGGTGTTGAACCACATACTTTCGCTAGAAGACTGTGAATAACGTGATTGATGACTTGTTGATCGTCCATTTCGGGTCCAACACAGCATGGCTTGAATACCGGGTCCGTTGTCTGGAAATTGCGTTTTTTTAGAGTTTAGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTMAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTTGGTCGATTTTTGTGAATTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGATAATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTGGGTCAATTTTACTAATTTTTGGGTCATTTTCCATGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCATCAATAAATGAAGAATTTG</pcr_primer_p1>
		<pcr_primer_p2>ATGCTAAAAATCTCAAAAATGTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCAT</canonical_amplicon>
		<polymorphic_amplicon>AGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTMAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13475</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>263896</contig_pos>
        <strand>+</strand>
        <context>AWTTTTCRGC[C/T]TMAWMATGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGC</left_flank>
        <right_flank>TAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAGACTCAAAATCGCGCGATTTTAAACTTGAAAAAAAACCTGAAAAAACCTCAGAAATGCGGCTTTTTGAGTCAAAATCTCTCGAAAATCGCGTTTTTTACACTAAAAATGGTTCAAAAAAGCCAAAAATAACACTTTTCGGGTCAAAATCCTTCAAAATCGCCAATTTCCCATCAAAAAACAGCTCAAAAACTCACGATCAATGCAAAATTTGTTCAAAGGCAGCGCTGCATTCTTGCACTTCTCCTCGGGGACCGAAATCGGTGTTGAACCACATACTTTCGCTAGAAGACTGTGAATAACGTGATTGATGACTTGTTGATCGTCCATTTCGGGTCCAACACAGCATGGCTTGAATACCGGGTCCGTTGTCTGGAAATTGCGTTTTTTTAGAGTTTAGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTTGGTCGATTTTTGTGAATTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGATAATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTGGGTCAATTTTACTAATTTTTGGGTCATTTTCCATG</canonical>
            <polymorphic>TCCAGACTCAAAATCGCGCGATTTTAAACTTGAAAAAAAACCTGAAAAAACCTCAGAAATGCGGCTTTTTGAGTCAAAATCTCTCGAAAATCGCGTTTTTTACACTAAAAATGGTTCAAAAAAGCCAAAAATAACACTTTTCGGGTCAAAATCCTTCAAAATCGCCAATTTCCCATCAAAAAACAGCTCAAAAACTCACGATCAATGCAAAATTTGTTCAAAGGCAGCGCTGCATTCTTGCACTTCTCCTCGGGGACCGAAATCGGTGTTGAACCACATACTTTCGCTAGAAGACTGTGAATAACGTGATTGATGACTTGTTGATCGTCCATTTCGGGTCCAACACAGCATGGCTTGAATACCGGGTCCGTTGTCTGGAAATTGCGTTTTTTTAGAGTTTAGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCYTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTTGGTCGATTTTTGTGAATTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGATAATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTGGGTCAATTTTACTAATTTTTGGGTCATTTTCCATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>220 167 156 145 83 64 62 60 43</canonical_bands>
                <polymorphic_bands>228 220 167 156 64 62 60 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCATCAATAAATGAAGAATTTG</pcr_primer_p1>
		<pcr_primer_p2>ATGCTAAAAATCTCAAAAATGTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCAT</canonical_amplicon>
		<polymorphic_amplicon>AGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCYTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13476</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>263893</contig_pos>
        <strand>+</strand>
        <context>GACAWTTTTC[A/G]GCYTMAWMAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTC</left_flank>
        <right_flank>GCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCCAGACTCAAAATCGCGCGATTTTAAACTTGAAAAAAAACCTGAAAAAACCTCAGAAATGCGGCTTTTTGAGTCAAAATCTCTCGAAAATCGCGTTTTTTACACTAAAAATGGTTCAAAAAAGCCAAAAATAACACTTTTCGGGTCAAAATCCTTCAAAATCGCCAATTTCCCATCAAAAAACAGCTCAAAAACTCACGATCAATGCAAAATTTGTTCAAAGGCAGCGCTGCATTCTTGCACTTCTCCTCGGGGACCGAAATCGGTGTTGAACCACATACTTTCGCTAGAAGACTGTGAATAACGTGATTGATGACTTGTTGATCGTCCATTTCGGGTCCAACACAGCATGGCTTGAATACCGGGTCCGTTGTCTGGAAATTGCGTTTTTTTAGAGTTTAGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTTGGTCGATTTTTGTGAATTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGATAATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTGGGTCAATTTTACTAATTTTTGGGTCATTTTCC</canonical>
            <polymorphic>ATTTCCAGACTCAAAATCGCGCGATTTTAAACTTGAAAAAAAACCTGAAAAAACCTCAGAAATGCGGCTTTTTGAGTCAAAATCTCTCGAAAATCGCGTTTTTTACACTAAAAATGGTTCAAAAAAGCCAAAAATAACACTTTTCGGGTCAAAATCCTTCAAAATCGCCAATTTCCCATCAAAAAACAGCTCAAAAACTCACGATCAATGCAAAATTTGTTCAAAGGCAGCGCTGCATTCTTGCACTTCTCCTCGGGGACCGAAATCGGTGTTGAACCACATACTTTCGCTAGAAGACTGTGAATAACGTGATTGATGACTTGTTGATCGTCCATTTCGGGTCCAACACAGCATGGCTTGAATACCGGGTCCGTTGTCTGGAAATTGCGTTTTTTTAGAGTTTAGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCRGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTTGGTCGATTTTTGTGAATTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGATAATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTGGGTCAATTTTACTAATTTTTGGGTCATTTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>217 167 156 145 83 67 62 60 43</canonical_bands>
                <polymorphic_bands>228 217 167 156 67 62 60 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCATCAATAAATGAAGAATTTG</pcr_primer_p1>
		<pcr_primer_p2>ATGCTAAAAATCTCAAAAATGTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCAT</canonical_amplicon>
		<polymorphic_amplicon>AGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCRGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13477</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>263887</contig_pos>
        <strand>+</strand>
        <context>GAAAATGACA[A/T]TTTTCRGCYT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACA</left_flank>
        <right_flank>TTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCACATTTCCAGACTCAAAATCGCGCGATTTTAAACTTGAAAAAAAACCTGAAAAAACCTCAGAAATGCGGCTTTTTGAGTCAAAATCTCTCGAAAATCGCGTTTTTTACACTAAAAATGGTTCAAAAAAGCCAAAAATAACACTTTTCGGGTCAAAATCCTTCAAAATCGCCAATTTCCCATCAAAAAACAGCTCAAAAACTCACGATCAATGCAAAATTTGTTCAAAGGCAGCGCTGCATTCTTGCACTTCTCCTCGGGGACCGAAATCGGTGTTGAACCACATACTTTCGCTAGAAGACTGTGAATAACGTGATTGATGACTTGTTGATCGTCCATTTCGGGTCCAACACAGCATGGCTTGAATACCGGGTCCGTTGTCTGGAAATTGCGTTTTTTTAGAGTTTAGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTTGGTCGATTTTTGTGAATTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGATAATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTGGGTCAATTTTACTAATTTTTGGGTCA</canonical>
            <polymorphic>TTTCACATTTCCAGACTCAAAATCGCGCGATTTTAAACTTGAAAAAAAACCTGAAAAAACCTCAGAAATGCGGCTTTTTGAGTCAAAATCTCTCGAAAATCGCGTTTTTTACACTAAAAATGGTTCAAAAAAGCCAAAAATAACACTTTTCGGGTCAAAATCCTTCAAAATCGCCAATTTCCCATCAAAAAACAGCTCAAAAACTCACGATCAATGCAAAATTTGTTCAAAGGCAGCGCTGCATTCTTGCACTTCTCCTCGGGGACCGAAATCGGTGTTGAACCACATACTTTCGCTAGAAGACTGTGAATAACGTGATTGATGACTTGTTGATCGTCCATTTCGGGTCCAACACAGCATGGCTTGAATACCGGGTCCGTTGTCTGGAAATTGCGTTTTTTTAGAGTTTAGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACAWTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTTGGTCGATTTTTGTGAATTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGATAATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTGGGTCAATTTTACTAATTTTTGGGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCATCAATAAATGAAGAATTTG</pcr_primer_p1>
		<pcr_primer_p2>ATGCTAAAAATCTCAAAAATGTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCAT</canonical_amplicon>
		<polymorphic_amplicon>AGCATCAATAAATGAAGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACAWTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13478</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>318174</contig_pos>
        <strand></strand>
        <context>TGCCTTTTTT[T/G]TGTTATTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATTTCTATAGCGGGGGGTCATCATTTAAGTGGCTGCTCCATGCCTTTTTT</left_flank>
        <right_flank>TGTTATTTTCCTCTAGTGGACAGACGGAAGAAATAGTGTGGGATATGGAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGGGAATGTTAACATGTTTTATATCATGTTGTAGATCTTGTCAAGACCTACATTTTGCATTTTAAATCGTTTTAAAATATTAAGATCTCGCGATTTCAATGGGTCAAGCTAAAACGTTTTGAATTGCTATATATTTTAATTTTATATAATTTTGTAGAGAATTTTATGACCTACATTTTGCAATTTGAATCGTTTCAAAATATTGAGTTTGAAGGCAGTCATGAGCTAAACAGGTGGGTAGCGGCTCTGAAGCGGCACAGCGGCGAACCTCGTTTTAGGAGAATAGGCATATCCTTCAACGGTTGCCGTTTTCAAGATTTTGGGCTAAAACCAAGAACCAGAAGTCTCCCTTGTTATTAACAAGATTAGCATTAGCTCACAGCTATTGTTAGCAAGATTACTGTACTCCTAACTCTCTAAACCCACTTGTTACAACCCACTTGCTCAATTTCTATAGCGGGGGGTCATCATTTAAGTGGCTGCTCCATGCCTTTTTTTTGTTATTTTCCTCTAGTGGACAGACGGAAGAAATAGTGTGGGATATGGAGAGAGTAGTTAGAGAGAAGAGATTTAATTATTCTAAGAAGAAGAAGAAGCAATTTAGAAGGAAGAAGGGTGTTATTATTTCAATGAGAAGAAAAACAGTTATGGTTTAAATGGAACGAGGTTTTTCGAGATAATTGAATAAATAAATATATATATATATAGGGTTAATGTGTGATTTGGAAAAGGAGAGGAGTGCGGGAAATCGTAAATGCTCTAAACGTGCACTTTGAGCTCAACTATCTTAGTTCCTTTAAGTGATATCAAAAAAATGTCAAATGAGGAAATGTTTGCCTTCAAATATTATACATTTTGTCAGTTGACAAAATTTCGATATCTCTTACAGTAACCGAGATATATACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGTGAAAGATATCAAAAAGTGGCTAACTAGT</canonical>
            <polymorphic>AACGGGAATGTTAACATGTTTTATATCATGTTGTAGATCTTGTCAAGACCTACATTTTGCATTTTAAATCGTTTTAAAATATTAAGATCTCGCGATTTCAATGGGTCAAGCTAAAACGTTTTGAATTGCTATATATTTTAATTTTATATAATTTTGTAGAGAATTTTATGACCTACATTTTGCAATTTGAATCGTTTCAAAATATTGAGTTTGAAGGCAGTCATGAGCTAAACAGGTGGGTAGCGGCTCTGAAGCGGCACAGCGGCGAACCTCGTTTTAGGAGAATAGGCATATCCTTCAACGGTTGCCGTTTTCAAGATTTTGGGCTAAAACCAAGAACCAGAAGTCTCCCTTGTTATTAACAAGATTAGCATTAGCTCACAGCTATTGTTAGCAAGATTACTGTACTCCTAACTCTCTAAACCCACTTGTTACAACCCACTTGCTCAATTTCTATAGCGGGGGGTCATCATTTAAGTGGCTGCTCCATGCCTTTTTTKTGTTATTTTCCTCTAGTGGACAGACGGAAGAAATAGTGTGGGATATGGAGAGAGTAGTTAGAGAGAAGAGATTTAATTATTCTAAGAAGAAGAAGAAGCAATTTAGAAGGAAGAAGGGTGTTATTATTTCAATGAGAAGAAAAACAGTTATGGTTTAAATGGAACGAGGTTTTTCGAGATAATTGAATAAATAAATATATATATATATAGGGTTAATGTGTGATTTGGAAAAGGAGAGGAGTGCGGGAAATCGTAAATGCTCTAAACGTGCACTTTGAGCTCAACTATCTTAGTTCCTTTAAGTGATATCAAAAAAATGTCAAATGAGGAAATGTTTGCCTTCAAATATTATACATTTTGTCAGTTGACAAAATTTCGATATCTCTTACAGTAACCGAGATATATACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGTGAAAGATATCAAAAAGTGGCTAACTAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAGATTAGCATTAGCTCACAG</pcr_primer_p1>
		<pcr_primer_p2>CCTTCTAAATTGCTTCTTCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAAGATTAGCATTAGCTCACAGCTATTGTTAGCAAGATTACTGTACTCCTAACTCTCTAAACCCACTTGTTACAACCCACTTGCTCAATTTCTATAGCGGGGGGTCATCATTTAAGTGGCTGCTCCATGCCTTTTTTTTGTTATTTTCCTCTAGTGGACAGACGGAAGAAATAGTGTGGGATATGGAGAGAGTAGTTAGAGAGAAGAGATTTAATTATTCTAAGAAGAAGAAGAAGCAATTTAGAAGG</canonical_amplicon>
		<polymorphic_amplicon>ACAAGATTAGCATTAGCTCACAGCTATTGTTAGCAAGATTACTGTACTCCTAACTCTCTAAACCCACTTGTTACAACCCACTTGCTCAATTTCTATAGCGGGGGGTCATCATTTAAGTGGCTGCTCCATGCCTTTTTTKTGTTATTTTCCTCTAGTGGACAGACGGAAGAAATAGTGTGGGATATGGAGAGAGTAGTTAGAGAGAAGAGATTTAATTATTCTAAGAAGAAGAAGAAGCAATTTAGAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13480</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>322607</contig_pos>
        <strand>+</strand>
        <context>GAAATTCATT[A/G]AAAAGGKTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATCGTGATTTTTTAGGTTACTGTAGTTTTCGTGGCGAGAAATTCATT</left_flank>
        <right_flank>AAAAGGTTTTTTTGGAGTTTTTTTCTTGAATTTTCGTTTTTAGGCAGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGTAATCTCTAGCTACCGTATTCCCCTCCTATCATTTTACTGTTGAAAATGCGCCCCACCGACACTTCCAACTTCGCTCCAGCCGAAATTTCAAAACGAAAAATTCGTCGAGTCAAAGCGAATGGTCGTGAGAGAGCCCGAATGCATGGGCTCAACGATGCTCTGGACAATTTGAGAGAATACATTCCGATCACCACGAAACACCAAAAATTGAGCAAAATCGAGACATTGCGGCTGGCGAGGTCAGTGAAAAATAGGTTTAAAAATAGGCCAAATATCGTAAATCAATAATTTTTAAGCTTGTAGAGTCGTTAGAAAAAAATTTGAAGTTTCGAAAAAAATTTTTTATTTTGCAAAAATAATGGTATTTTCTCTGTAAACTAGATAAATTCTTGGTTTTTGATTGTTTGCGACCATTTTTAAGCTGTTCCGCTAGAAAATTCGCTGAAAATCGTGATTTTTTAGGTTACTGTAGTTTTCGTGGCGAGAAATTCATTAAAAAGGTTTTTTTGGAGTTTTTTTCTTGAATTTTCGTTTTTAGGCAGTTTTTGAAATCCAAAATTGTGTGAAAAATTGAGAAATTAAAGAAAAATCTGAAAAATTCCAAAAAAAATTTTTTGCGAAAAATTTTTTTTCGAAAATTTTCCAAAACTAGATCAATTATCGTCTTTTTAGTGTTTTGCGACCATTTTTAGAGTTGTTTTGCTGAAAATAGTAATTTTTAGGTTACTGTAGTTTTCGTGGCGAGAAATTTTGTTATTTTTCGAAAACATCGTTTTTTTTGCAGTTTTTTCTGGAACTTTTGTGTTTAAGCTAGTTTTGGAGGCCTAAAAATTTTAAATTAACTAGAAAATTTGAGAAATTTAAGAAAAAAAAATCGGAAAAAATCCAAAAAAAAGTTTTTTGAAATTTCTGAAAAAAAAAGCAAGATTTTTATTTAAATTCAATATATTCCCTGTTTTGACACTAATTTTAGTGCAATTAGCACTAATTACGAC</canonical>
            <polymorphic>ACAGTAATCTCTAGCTACCGTATTCCCCTCCTATCATTTTACTGTTGAAAATGCGCCCCACCGACACTTCCAACTTCGCTCCAGCCGAAATTTCAAAACGAAAAATTCGTCGAGTCAAAGCGAATGGTCGTGAGAGAGCCCGAATGCATGGGCTCAACGATGCTCTGGACAATTTGAGAGAATACATTCCGATCACCACGAAACACCAAAAATTGAGCAAAATCGAGACATTGCGGCTGGCGAGGTCAGTGAAAAATAGGTTTAAAAATAGGCCAAATATCGTAAATCAATAATTTTTAAGCTTGTAGAGTCGTTAGAAAAAAATTTGAAGTTTCGAAAAAAATTTTTTATTTTGCAAAAATAATGGTATTTTCTCTGTAAACTAGATAAATTCTTGGTTTTTGATTGTTTGCGACCATTTTTAAGCTGTTCCGCTAGAAAATTCGCTGAAAATCGTGATTTTTTAGGTTACTGTAGTTTTCGTGGCGAGAAATTCATTRAAAAGGTTTTTTTGGAGTTTTTTTCTTGAATTTTCGTTTTTAGGCAGTTTTTGAAATCCAAAATTGTGTGAAAAATTGAGAAATTAAAGAAAAATCTGAAAAATTCCAAAAAAAATTTTTTGCGAAAAATTTTTTTTCGAAAATTTTCCAAAACTAGATCAATTATCGTCTTTTTAGTGTTTTGCGACCATTTTTAGAGTTGTTTTGCTGAAAATAGTAATTTTTAGGTTACTGTAGTTTTCGTGGCGAGAAATTTTGTTATTTTTCGAAAACATCGTTTTTTTTGCAGTTTTTTCTGGAACTTTTGTGTTTAAGCTAGTTTTGGAGGCCTAAAAATTTTAAATTAACTAGAAAATTTGAGAAATTTAAGAAAAAAAAATCGGAAAAAATCCAAAAAAAAGTTTTTTGAAATTTCTGAAAAAAAAAGCAAGATTTTTATTTAAATTCAATATATTCCCTGTTTTGACACTAATTTTAGTGCAATTAGCACTAATTACGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>262 227 125 86 76 74 60 35 28 22 5</canonical_bands>
                <polymorphic_bands>262 227 162 125 74 60 35 28 22 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTAGAAAATTCGCTGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GCAAAACACTAAAAAGACGATAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCTAGAAAATTCGCTGAAAATCGTGATTTTTTAGGTTACTGTAGTTTTCGTGGCGAGAAATTCATTAAAAAGGTTTTTTTGGAGTTTTTTTCTTGAATTTTCGTTTTTAGGCAGTTTTTGAAATCCAAAATTGTGTGAAAAATTGAGAAATTAAAGAAAAATCTGAAAAATTCCAAAAAAAATTTTTTGCGAAAAATTTTTTTTCGAAAATTTTCCAAAACTAGATCAATTATCGTCTTTTTAGTGTTTTGC</canonical_amplicon>
		<polymorphic_amplicon>GCTAGAAAATTCGCTGAAAATCGTGATTTTTTAGGTTACTGTAGTTTTCGTGGCGAGAAATTCATTRAAAAGGTTTTTTTGGAGTTTTTTTCTTGAATTTTCGTTTTTAGGCAGTTTTTGAAATCCAAAATTGTGTGAAAAATTGAGAAATTAAAGAAAAATCTGAAAAATTCCAAAAAAAATTTTTTGCGAAAAATTTTTTTTCGAAAATTTTCCAAAACTAGATCAATTATCGTCTTTTTAGTGTTTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13482</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>341356</contig_pos>
        <strand>+</strand>
        <context>TTCCAGAACT[C/T]TCCAAAAATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTCACTCGATTTTTCACAAATTTCAGCCAATTTTTCTTCCAGAACT</left_flank>
        <right_flank>TCCAAAAATGCTCGGCACCCGTCTGAGCACCACTGGCAGATGCCTTCTGG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGAATATGAAACCTTCAAATTTTAAATTCCCGCTAATATCCTTAAACGCGCCAGCCTGGCGCATCTCGCGATGCGTTGACTCATTTCTCGTGCGATGCATATTTTGAAGATTTAAAAGACTTTTTCAGCTTTTAATCCGAATTTTTCGGTTTTCTGACTAAAAAAATTGAAAGAAAGCGTAATTTTTATACAGAAATCCTGGAAAACTATCGATTTTTGCTATTTTTCAGCTAGAAAATGATTTTTTTACATAAAATTTTTTTTCAGAGTTTTAAGCATTTCAGAACGATTCGACTGGGAAATTGGCAGAAATTTAGAGAAAAGAACCTGAAAAATTCATTTTTAAAAGCTTTTTGAACCTGAAAATAATTTTTTTCACCTTTTTTTTCGATTTTTTTTGTAAAATTTTTATTGGTTTTCAGCTATTTTCTATCATTTTCTAGACCTTTTTTCACTCGATTTTTCACAAATTTCAGCCAATTTTTCTTCCAGAACTTTCCAAAAATGCTCGGCACCCGTCTGAGCACCACTGGCAGATGCCTTCTGGCCGCCACGTCGCATGTTGAAGTCTCCGGAGGCATTCAGAAGCGACAAATGGGACGGAGACAGCCGAAACAGGGAAAACCGCCGATTTTGCCGCCGTCTAAGAAGGTGCGGCGATGGGAACTAGGAGAAAAATATTTAAAAAAAATAAAAAATTCCCAAATTTTTTCCTGAAAAATCTGAAAAAAGTCATTTTTGTTGCCTGAAAACTAGAAAAAATAAGGAATTCTGAAATTTTTCGTCGAAAAAACCCCAATATTTCCTTCCAGGTCCTCTATCACGTCGTCCACGCCCCGTGGCAGAAACCAGAAGACGTCGAGGAGCTTCTGTGGCGTCGTCACGCCTACAACAACGCCGTCGTCTCGCTGCGCGAGGTTTTCCGCGCGGAAATCGCTCAAAACGCGTCACACGGACAGGGTATCGAGGCGATGAAGGAGGCAGAAGCGTTGGAATT</canonical>
            <polymorphic>TTTCGAATATGAAACCTTCAAATTTTAAATTCCCGCTAATATCCTTAAACGCGCCAGCCTGGCGCATCTCGCGATGCGTTGACTCATTTCTCGTGCGATGCATATTTTGAAGATTTAAAAGACTTTTTCAGCTTTTAATCCGAATTTTTCGGTTTTCTGACTAAAAAAATTGAAAGAAAGCGTAATTTTTATACAGAAATCCTGGAAAACTATCGATTTTTGCTATTTTTCAGCTAGAAAATGATTTTTTTACATAAAATTTTTTTTCAGAGTTTTAAGCATTTCAGAACGATTCGACTGGGAAATTGGCAGAAATTTAGAGAAAAGAACCTGAAAAATTCATTTTTAAAAGCTTTTTGAACCTGAAAATAATTTTTTTCACCTTTTTTTTCGATTTTTTTTGTAAAATTTTTATTGGTTTTCAGCTATTTTCTATCATTTTCTAGACCTTTTTTCACTCGATTTTTCACAAATTTCAGCCAATTTTTCTTCCAGAACTYTCCAAAAATGCTCGGCACCCGTCTGAGCACCACTGGCAGATGCCTTCTGGCCGCCACGTCGCATGTTGAAGTCTCCGGAGGCATTCAGAAGCGACAAATGGGACGGAGACAGCCGAAACAGGGAAAACCGCCGATTTTGCCGCCGTCTAAGAAGGTGCGGCGATGGGAACTAGGAGAAAAATATTTAAAAAAAATAAAAAATTCCCAAATTTTTTCCTGAAAAATCTGAAAAAAGTCATTTTTGTTGCCTGAAAACTAGAAAAAATAAGGAATTCTGAAATTTTTCGTCGAAAAAACCCCAATATTTCCTTCCAGGTCCTCTATCACGTCGTCCACGCCCCGTGGCAGAAACCAGAAGACGTCGAGGAGCTTCTGTGGCGTCGTCACGCCTACAACAACGCCGTCGTCTCGCTGCGCGAGGTTTTCCGCGCGGAAATCGCTCAAAACGCGTCACACGGACAGGGTATCGAGGCGATGAAGGAGGCAGAAGCGTTGGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTATCATTTTCTAGACCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCTAGTTTTCAGGCAACAAA</pcr_primer_p2>
		<pcr_amplicon_size>332</pcr_amplicon_size>
		<canonical_amplicon>TTTCTATCATTTTCTAGACCTTTTTTCACTCGATTTTTCACAAATTTCAGCCAATTTTTCTTCCAGAACTTTCCAAAAATGCTCGGCACCCGTCTGAGCACCACTGGCAGATGCCTTCTGGCCGCCACGTCGCATGTTGAAGTCTCCGGAGGCATTCAGAAGCGACAAATGGGACGGAGACAGCCGAAACAGGGAAAACCGCCGATTTTGCCGCCGTCTAAGAAGGTGCGGCGATGGGAACTAGGAGAAAAATATTTAAAAAAAATAAAAAATTCCCAAATTTTTTCCTGAAAAATCTGAAAAAAGTCATTTTTGTTGCCTGAAAACTAGAA</canonical_amplicon>
		<polymorphic_amplicon>TTTCTATCATTTTCTAGACCTTTTTTCACTCGATTTTTCACAAATTTCAGCCAATTTTTCTTCCAGAACTYTCCAAAAATGCTCGGCACCCGTCTGAGCACCACTGGCAGATGCCTTCTGGCCGCCACGTCGCATGTTGAAGTCTCCGGAGGCATTCAGAAGCGACAAATGGGACGGAGACAGCCGAAACAGGGAAAACCGCCGATTTTGCCGCCGTCTAAGAAGGTGCGGCGATGGGAACTAGGAGAAAAATATTTAAAAAAAATAAAAAATTCCCAAATTTTTTCCTGAAAAATCTGAAAAAAGTCATTTTTGTTGCCTGAAAACTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13483</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>341423</contig_pos>
        <strand>+</strand>
        <context>CGTCGCATGT[A/T]GAAGTCTCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCCGTCTGAGCACCACTGGCAGATGCCTTCTGGCCGCCACGTCGCATGT</left_flank>
        <right_flank>GAAGTCTCCGGAGGCATTCAGAAGCGACAAATGGGACGGAGACAGCCGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGCGATGCGTTGACTCATTTCTCGTGCGATGCATATTTTGAAGATTTAAAAGACTTTTTCAGCTTTTAATCCGAATTTTTCGGTTTTCTGACTAAAAAAATTGAAAGAAAGCGTAATTTTTATACAGAAATCCTGGAAAACTATCGATTTTTGCTATTTTTCAGCTAGAAAATGATTTTTTTACATAAAATTTTTTTTCAGAGTTTTAAGCATTTCAGAACGATTCGACTGGGAAATTGGCAGAAATTTAGAGAAAAGAACCTGAAAAATTCATTTTTAAAAGCTTTTTGAACCTGAAAATAATTTTTTTCACCTTTTTTTTCGATTTTTTTTGTAAAATTTTTATTGGTTTTCAGCTATTTTCTATCATTTTCTAGACCTTTTTTCACTCGATTTTTCACAAATTTCAGCCAATTTTTCTTCCAGAACTTTCCAAAAATGCTCGGCACCCGTCTGAGCACCACTGGCAGATGCCTTCTGGCCGCCACGTCGCATGTTGAAGTCTCCGGAGGCATTCAGAAGCGACAAATGGGACGGAGACAGCCGAAACAGGGAAAACCGCCGATTTTGCCGCCGTCTAAGAAGGTGCGGCGATGGGAACTAGGAGAAAAATATTTAAAAAAAATAAAAAATTCCCAAATTTTTTCCTGAAAAATCTGAAAAAAGTCATTTTTGTTGCCTGAAAACTAGAAAAAATAAGGAATTCTGAAATTTTTCGTCGAAAAAACCCCAATATTTCCTTCCAGGTCCTCTATCACGTCGTCCACGCCCCGTGGCAGAAACCAGAAGACGTCGAGGAGCTTCTGTGGCGTCGTCACGCCTACAACAACGCCGTCGTCTCGCTGCGCGAGGTTTTCCGCGCGGAAATCGCTCAAAACGCGTCACACGGACAGGGTATCGAGGCGATGAAGGAGGCAGAAGCGTTGGAATTCGATGAGCTGATTTTGGAGAATCAGAAGAGAAACGAGGTAAAATTTTGGTGGTTTTATGAGGAAAAA</canonical>
            <polymorphic>CTCGCGATGCGTTGACTCATTTCTCGTGCGATGCATATTTTGAAGATTTAAAAGACTTTTTCAGCTTTTAATCCGAATTTTTCGGTTTTCTGACTAAAAAAATTGAAAGAAAGCGTAATTTTTATACAGAAATCCTGGAAAACTATCGATTTTTGCTATTTTTCAGCTAGAAAATGATTTTTTTACATAAAATTTTTTTTCAGAGTTTTAAGCATTTCAGAACGATTCGACTGGGAAATTGGCAGAAATTTAGAGAAAAGAACCTGAAAAATTCATTTTTAAAAGCTTTTTGAACCTGAAAATAATTTTTTTCACCTTTTTTTTCGATTTTTTTTGTAAAATTTTTATTGGTTTTCAGCTATTTTCTATCATTTTCTAGACCTTTTTTCACTCGATTTTTCACAAATTTCAGCCAATTTTTCTTCCAGAACTTTCCAAAAATGCTCGGCACCCGTCTGAGCACCACTGGCAGATGCCTTCTGGCCGCCACGTCGCATGTWGAAGTCTCCGGAGGCATTCAGAAGCGACAAATGGGACGGAGACAGCCGAAACAGGGAAAACCGCCGATTTTGCCGCCGTCTAAGAAGGTGCGGCGATGGGAACTAGGAGAAAAATATTTAAAAAAAATAAAAAATTCCCAAATTTTTTCCTGAAAAATCTGAAAAAAGTCATTTTTGTTGCCTGAAAACTAGAAAAAATAAGGAATTCTGAAATTTTTCGTCGAAAAAACCCCAATATTTCCTTCCAGGTCCTCTATCACGTCGTCCACGCCCCGTGGCAGAAACCAGAAGACGTCGAGGAGCTTCTGTGGCGTCGTCACGCCTACAACAACGCCGTCGTCTCGCTGCGCGAGGTTTTCCGCGCGGAAATCGCTCAAAACGCGTCACACGGACAGGGTATCGAGGCGATGAAGGAGGCAGAAGCGTTGGAATTCGATGAGCTGATTTTGGAGAATCAGAAGAGAAACGAGGTAAAATTTTGGTGGTTTTATGAGGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCACTCGATTTTTCACAA</pcr_primer_p1>
		<pcr_primer_p2>TCAGGCAACAAAAATGACTT</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>TTTTCACTCGATTTTTCACAAATTTCAGCCAATTTTTCTTCCAGAACTTTCCAAAAATGCTCGGCACCCGTCTGAGCACCACTGGCAGATGCCTTCTGGCCGCCACGTCGCATGTTGAAGTCTCCGGAGGCATTCAGAAGCGACAAATGGGACGGAGACAGCCGAAACAGGGAAAACCGCCGATTTTGCCGCCGTCTAAGAAGGTGCGGCGATGGGAACTAGGAGAAAAATATTTAAAAAAAATAAAAAATTCCCAAATTTTTTCCTGAAAAATCTGAAAAAAGTCATTTTTGTTGCCTGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCACTCGATTTTTCACAAATTTCAGCCAATTTTTCTTCCAGAACTTTCCAAAAATGCTCGGCACCCGTCTGAGCACCACTGGCAGATGCCTTCTGGCCGCCACGTCGCATGTWGAAGTCTCCGGAGGCATTCAGAAGCGACAAATGGGACGGAGACAGCCGAAACAGGGAAAACCGCCGATTTTGCCGCCGTCTAAGAAGGTGCGGCGATGGGAACTAGGAGAAAAATATTTAAAAAAAATAAAAAATTCCCAAATTTTTTCCTGAAAAATCTGAAAAAAGTCATTTTTGTTGCCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13484</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>341444</contig_pos>
        <strand>+</strand>
        <context>GAGGCATTCA[A/G]AAGCGACAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGATGCCTTCTGGCCGCCACGTCGCATGTTGAAGTCTCCGGAGGCATTCA</left_flank>
        <right_flank>AAGCGACAAATGGGACGGAGACAGCCGAAACAGGGAAAACCGCCGATTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCGTGCGATGCATATTTTGAAGATTTAAAAGACTTTTTCAGCTTTTAATCCGAATTTTTCGGTTTTCTGACTAAAAAAATTGAAAGAAAGCGTAATTTTTATACAGAAATCCTGGAAAACTATCGATTTTTGCTATTTTTCAGCTAGAAAATGATTTTTTTACATAAAATTTTTTTTCAGAGTTTTAAGCATTTCAGAACGATTCGACTGGGAAATTGGCAGAAATTTAGAGAAAAGAACCTGAAAAATTCATTTTTAAAAGCTTTTTGAACCTGAAAATAATTTTTTTCACCTTTTTTTTCGATTTTTTTTGTAAAATTTTTATTGGTTTTCAGCTATTTTCTATCATTTTCTAGACCTTTTTTCACTCGATTTTTCACAAATTTCAGCCAATTTTTCTTCCAGAACTTTCCAAAAATGCTCGGCACCCGTCTGAGCACCACTGGCAGATGCCTTCTGGCCGCCACGTCGCATGTTGAAGTCTCCGGAGGCATTCAGAAGCGACAAATGGGACGGAGACAGCCGAAACAGGGAAAACCGCCGATTTTGCCGCCGTCTAAGAAGGTGCGGCGATGGGAACTAGGAGAAAAATATTTAAAAAAAATAAAAAATTCCCAAATTTTTTCCTGAAAAATCTGAAAAAAGTCATTTTTGTTGCCTGAAAACTAGAAAAAATAAGGAATTCTGAAATTTTTCGTCGAAAAAACCCCAATATTTCCTTCCAGGTCCTCTATCACGTCGTCCACGCCCCGTGGCAGAAACCAGAAGACGTCGAGGAGCTTCTGTGGCGTCGTCACGCCTACAACAACGCCGTCGTCTCGCTGCGCGAGGTTTTCCGCGCGGAAATCGCTCAAAACGCGTCACACGGACAGGGTATCGAGGCGATGAAGGAGGCAGAAGCGTTGGAATTCGATGAGCTGATTTTGGAGAATCAGAAGAGAAACGAGGTAAAATTTTGGTGGTTTTATGAGGAAAAATGATGAAAAAGGCCTGAAATC</canonical>
            <polymorphic>TCTCGTGCGATGCATATTTTGAAGATTTAAAAGACTTTTTCAGCTTTTAATCCGAATTTTTCGGTTTTCTGACTAAAAAAATTGAAAGAAAGCGTAATTTTTATACAGAAATCCTGGAAAACTATCGATTTTTGCTATTTTTCAGCTAGAAAATGATTTTTTTACATAAAATTTTTTTTCAGAGTTTTAAGCATTTCAGAACGATTCGACTGGGAAATTGGCAGAAATTTAGAGAAAAGAACCTGAAAAATTCATTTTTAAAAGCTTTTTGAACCTGAAAATAATTTTTTTCACCTTTTTTTTCGATTTTTTTTGTAAAATTTTTATTGGTTTTCAGCTATTTTCTATCATTTTCTAGACCTTTTTTCACTCGATTTTTCACAAATTTCAGCCAATTTTTCTTCCAGAACTTTCCAAAAATGCTCGGCACCCGTCTGAGCACCACTGGCAGATGCCTTCTGGCCGCCACGTCGCATGTTGAAGTCTCCGGAGGCATTCARAAGCGACAAATGGGACGGAGACAGCCGAAACAGGGAAAACCGCCGATTTTGCCGCCGTCTAAGAAGGTGCGGCGATGGGAACTAGGAGAAAAATATTTAAAAAAAATAAAAAATTCCCAAATTTTTTCCTGAAAAATCTGAAAAAAGTCATTTTTGTTGCCTGAAAACTAGAAAAAATAAGGAATTCTGAAATTTTTCGTCGAAAAAACCCCAATATTTCCTTCCAGGTCCTCTATCACGTCGTCCACGCCCCGTGGCAGAAACCAGAAGACGTCGAGGAGCTTCTGTGGCGTCGTCACGCCTACAACAACGCCGTCGTCTCGCTGCGCGAGGTTTTCCGCGCGGAAATCGCTCAAAACGCGTCACACGGACAGGGTATCGAGGCGATGAAGGAGGCAGAAGCGTTGGAATTCGATGAGCTGATTTTGGAGAATCAGAAGAGAAACGAGGTAAAATTTTGGTGGTTTTATGAGGAAAAATGATGAAAAAGGCCTGAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>248 238 140 111 64 63 53 49 17 17</canonical_bands>
                <polymorphic_bands>248 238 203 111 64 53 49 17 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCACTCGATTTTTCACAA</pcr_primer_p1>
		<pcr_primer_p2>TCAGGCAACAAAAATGACTT</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>TTTTCACTCGATTTTTCACAAATTTCAGCCAATTTTTCTTCCAGAACTTTCCAAAAATGCTCGGCACCCGTCTGAGCACCACTGGCAGATGCCTTCTGGCCGCCACGTCGCATGTTGAAGTCTCCGGAGGCATTCAGAAGCGACAAATGGGACGGAGACAGCCGAAACAGGGAAAACCGCCGATTTTGCCGCCGTCTAAGAAGGTGCGGCGATGGGAACTAGGAGAAAAATATTTAAAAAAAATAAAAAATTCCCAAATTTTTTCCTGAAAAATCTGAAAAAAGTCATTTTTGTTGCCTGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCACTCGATTTTTCACAAATTTCAGCCAATTTTTCTTCCAGAACTTTCCAAAAATGCTCGGCACCCGTCTGAGCACCACTGGCAGATGCCTTCTGGCCGCCACGTCGCATGTTGAAGTCTCCGGAGGCATTCARAAGCGACAAATGGGACGGAGACAGCCGAAACAGGGAAAACCGCCGATTTTGCCGCCGTCTAAGAAGGTGCGGCGATGGGAACTAGGAGAAAAATATTTAAAAAAAATAAAAAATTCCCAAATTTTTTCCTGAAAAATCTGAAAAAAGTCATTTTTGTTGCCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13507</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>341698</contig_pos>
        <strand>+</strand>
        <context>TCCACGCCCC[A/G]TGGCAGAAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAACCCCAATATTTCCTTCCAGGTCCTCTATCACGTCGTCCACGCCCC</left_flank>
        <right_flank>TGGCAGAAACCAGAAGACGTCGAGGAGCTTCTGTGGCGTCGTCACGCCTA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTAAAAGCTTTTTGAACCTGAAAATAATTTTTTTCACCTTTTTTTTCGATTTTTTTTGTAAAATTTTTATTGGTTTTCAGCTATTTTCTATCATTTTCTAGACCTTTTTTCACTCGATTTTTCACAAATTTCAGCCAATTTTTCTTCCAGAACTTTCCAAAAATGCTCGGCACCCGTCTGAGCACCACTGGCAGATGCCTTCTGGCCGCCACGTCGCATGTTGAAGTCTCCGGAGGCATTCAGAAGCGACAAATGGGACGGAGACAGCCGAAACAGGGAAAACCGCCGATTTTGCCGCCGTCTAAGAAGGTGCGGCGATGGGAACTAGGAGAAAAATATTTAAAAAAAATAAAAAATTCCCAAATTTTTTCCTGAAAAATCTGAAAAAAGTCATTTTTGTTGCCTGAAAACTAGAAAAAATAAGGAATTCTGAAATTTTTCGTCGAAAAAACCCCAATATTTCCTTCCAGGTCCTCTATCACGTCGTCCACGCCCCGTGGCAGAAACCAGAAGACGTCGAGGAGCTTCTGTGGCGTCGTCACGCCTACAACAACGCCGTCGTCTCGCTGCGCGAGGTTTTCCGCGCGGAAATCGCTCAAAACGCGTCACACGGACAGGGTATCGAGGCGATGAAGGAGGCAGAAGCGTTGGAATTCGATGAGCTGATTTTGGAGAATCAGAAGAGAAACGAGGTAAAATTTTGGTGGTTTTATGAGGAAAAATGATGAAAAAGGCCTGAAATCCTTAAAAATCTCATCCAATCACCTAAAAACGCCCGAAATTCGCTTTAAAGACCCCAAAAACAACCCATTTCCAACTTTTTTCCTCTTGGTGGCCTAACTTTTTGAAGCCATGGCCTAGAAATCCAAAACTCGGCCAGAAAGCTTTCAGCATTCCCGAATAGTACAAACTCCTCAGAATCCGGTCAAAAATCCCCAAAAACAACTAATTTTTAGCCATTTCTCCCTTGGTGGCCCAACTTTCCCAAACCATGGCC</canonical>
            <polymorphic>TTTTTAAAAGCTTTTTGAACCTGAAAATAATTTTTTTCACCTTTTTTTTCGATTTTTTTTGTAAAATTTTTATTGGTTTTCAGCTATTTTCTATCATTTTCTAGACCTTTTTTCACTCGATTTTTCACAAATTTCAGCCAATTTTTCTTCCAGAACTTTCCAAAAATGCTCGGCACCCGTCTGAGCACCACTGGCAGATGCCTTCTGGCCGCCACGTCGCATGTTGAAGTCTCCGGAGGCATTCAGAAGCGACAAATGGGACGGAGACAGCCGAAACAGGGAAAACCGCCGATTTTGCCGCCGTCTAAGAAGGTGCGGCGATGGGAACTAGGAGAAAAATATTTAAAAAAAATAAAAAATTCCCAAATTTTTTCCTGAAAAATCTGAAAAAAGTCATTTTTGTTGCCTGAAAACTAGAAAAAATAAGGAATTCTGAAATTTTTCGTCGAAAAAACCCCAATATTTCCTTCCAGGTCCTCTATCACGTCGTCCACGCCCCRTGGCAGAAACCAGAAGACGTCGAGGAGCTTCTGTGGCGTCGTCACGCCTACAACAACGCCGTCGTCTCGCTGCGCGAGGTTTTCCGCGCGGAAATCGCTCAAAACGCGTCACACGGACAGGGTATCGAGGCGATGAAGGAGGCAGAAGCGTTGGAATTCGATGAGCTGATTTTGGAGAATCAGAAGAGAAACGAGGTAAAATTTTGGTGGTTTTATGAGGAAAAATGATGAAAAAGGCCTGAAATCCTTAAAAATCTCATCCAATCACCTAAAAACGCCCGAAATTCGCTTTAAAGACCCCAAAAACAACCCATTTCCAACTTTTTTCCTCTTGGTGGCCTAACTTTTTGAAGCCATGGCCTAGAAATCCAAAACTCGGCCAGAAAGCTTTCAGCATTCCCGAATAGTACAAACTCCTCAGAATCCGGTCAAAAATCCCCAAAAACAACTAATTTTTAGCCATTTCTCCCTTGGTGGCCCAACTTTCCCAAACCATGGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>498 356 139 7</canonical_bands>
                <polymorphic_bands>854 139 7</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>169 139 101 96 76 70 67 58 48 39 33 24 24 12 12 9 9 9 3 2</canonical_bands>
                <polymorphic_bands>169 139 101 96 76 70 67 58 48 42 39 24 24 12 12 9 9 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTGCCTGAAAACTAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGATTCTCCAAAATCAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>282</pcr_amplicon_size>
		<canonical_amplicon>TGTTGCCTGAAAACTAGAAAAAATAAGGAATTCTGAAATTTTTCGTCGAAAAAACCCCAATATTTCCTTCCAGGTCCTCTATCACGTCGTCCACGCCCCGTGGCAGAAACCAGAAGACGTCGAGGAGCTTCTGTGGCGTCGTCACGCCTACAACAACGCCGTCGTCTCGCTGCGCGAGGTTTTCCGCGCGGAAATCGCTCAAAACGCGTCACACGGACAGGGTATCGAGGCGATGAAGGAGGCAGAAGCGTTGGAATTCGATGAGCTGATTTTGGAGAATCA</canonical_amplicon>
		<polymorphic_amplicon>TGTTGCCTGAAAACTAGAAAAAATAAGGAATTCTGAAATTTTTCGTCGAAAAAACCCCAATATTTCCTTCCAGGTCCTCTATCACGTCGTCCACGCCCCRTGGCAGAAACCAGAAGACGTCGAGGAGCTTCTGTGGCGTCGTCACGCCTACAACAACGCCGTCGTCTCGCTGCGCGAGGTTTTCCGCGCGGAAATCGCTCAAAACGCGTCACACGGACAGGGTATCGAGGCGATGAAGGAGGCAGAAGCGTTGGAATTCGATGAGCTGATTTTGGAGAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13508</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>343186</contig_pos>
        <strand>+</strand>
        <context>GTGGAGAGAA[C/G]AGGCAGATGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTGGGGACACAGATGGGAATGATGGAGGAAGCGGCTGCTAGTGGAGAGAA</left_flank>
        <right_flank>AGGCAGATGGAGCAGTAGAAGGTAGAAATGTGCGAAAAATTTGGAAAAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAACCACTCATTTTTAGCCATTTTTCCTTGATGACCTAACTTTTTGAAGCCATGGCCTAGAAATCACAAAACTAGGCCATAGCGATTCAGAAGTGATTTCTCTAAATTTCCAATGTTTTCAGACAAAACGAGCGGACCGTGAATTGCGAGAATCCGAGGCGACGAAGGAGACGAAACGAGTGATTCTAGATGAGATCCACGTGGAGCTGGAGAAGCGGAATCTGGAGAAGAAGGCGGCCGAGGAGGAGGTCAAACGGGCTATCGAACGATCGTCGGGCTTCGTGAATCGAGAGAATCTGGAAAAGAAGATTCTGGAGGCACTGGAGACGCCGACGATCTACGACTTCGCTATCGATCGAGCTGGAAATAAGTACTTCGTGCCACAACCGGTTAAATATCAAGAGGGAACACCGACACGACAGAAGGGACGGTTGTATGATCAGACACTGGGGACACAGATGGGAATGATGGAGGAAGCGGCTGCTAGTGGAGAGAACAGGCAGATGGAGCAGTAGAAGGTAGAAATGTGCGAAAAATTTGGAAAAATTGCACTAAAAATGATATTAATTACCTAAAAAATCACCTAAAAACCCCAAAAAAACAGCCCATTTTCCATAGGTAGGAGGTAGAAATCTGCGAAAAATTGCACTAAAAATGATAAAAACCGCATCTAATCACCTAAAATCAGCAAAAATCGAGTTTAATTGCCCAGAAATCCGGCTCCTGGACGTTTCAGAACCCGACGTTTCGGAACCCGACAGTTCAGAACCCGACAGTTCAGAACATGATGTTTCAAAACTTTTCTGCATTTTTGTATAGTGGTGTTTATGCACCAAATGAGCATTGCTCATTTCAATTTTGTGTTTTTCTGCTTTTTTGTTCATTCTCATCTACCGTACTCCAAATAATGATAGGTTCACACTGGGTATCTCTCAAAAAATCGAAAAAAATGAACTTTTCAAGAACGATGTCTTGAAGTACGCAATAATTTTTCCGG</canonical>
            <polymorphic>AAAAAACCACTCATTTTTAGCCATTTTTCCTTGATGACCTAACTTTTTGAAGCCATGGCCTAGAAATCACAAAACTAGGCCATAGCGATTCAGAAGTGATTTCTCTAAATTTCCAATGTTTTCAGACAAAACGAGCGGACCGTGAATTGCGAGAATCCGAGGCGACGAAGGAGACGAAACGAGTGATTCTAGATGAGATCCACGTGGAGCTGGAGAAGCGGAATCTGGAGAAGAAGGCGGCCGAGGAGGAGGTCAAACGGGCTATCGAACGATCGTCGGGCTTCGTGAATCGAGAGAATCTGGAAAAGAAGATTCTGGAGGCACTGGAGACGCCGACGATCTACGACTTCGCTATCGATCGAGCTGGAAATAAGTACTTCGTGCCACAACCGGTTAAATATCAAGAGGGAACACCGACACGACAGAAGGGACGGTTGTATGATCAGACACTGGGGACACAGATGGGAATGATGGAGGAAGCGGCTGCTAGTGGAGAGAASAGGCAGATGGAGCAGTAGAAGGTAGAAATGTGCGAAAAATTTGGAAAAATTGCACTAAAAATGATATTAATTACCTAAAAAATCACCTAAAAACCCCAAAAAAACAGCCCATTTTCCATAGGTAGGAGGTAGAAATCTGCGAAAAATTGCACTAAAAATGATAAAAACCGCATCTAATCACCTAAAATCAGCAAAAATCGAGTTTAATTGCCCAGAAATCCGGCTCCTGGACGTTTCAGAACCCGACGTTTCGGAACCCGACAGTTCAGAACCCGACAGTTCAGAACATGATGTTTCAAAACTTTTCTGCATTTTTGTATAGTGGTGTTTATGCACCAAATGAGCATTGCTCATTTCAATTTTGTGTTTTTCTGCTTTTTTGTTCATTCTCATCTACCGTACTCCAAATAATGATAGGTTCACACTGGGTATCTCTCAAAAAATCGAAAAAAATGAACTTTTCAAGAACGATGTCTTGAAGTACGCAATAATTTTTCCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTAAATATCAAGAGGGAACAC</pcr_primer_p1>
		<pcr_primer_p2>GCAGATTTCTACCTCCTACCTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTTAAATATCAAGAGGGAACACCGACACGACAGAAGGGACGGTTGTATGATCAGACACTGGGGACACAGATGGGAATGATGGAGGAAGCGGCTGCTAGTGGAGAGAACAGGCAGATGGAGCAGTAGAAGGTAGAAATGTGCGAAAAATTTGGAAAAATTGCACTAAAAATGATATTAATTACCTAAAAAATCACCTAAAAACCCCAAAAAAACAGCCCATTTTCCATAGGTAGGAGGTAGAAATCTGC</canonical_amplicon>
		<polymorphic_amplicon>GGTTAAATATCAAGAGGGAACACCGACACGACAGAAGGGACGGTTGTATGATCAGACACTGGGGACACAGATGGGAATGATGGAGGAAGCGGCTGCTAGTGGAGAGAASAGGCAGATGGAGCAGTAGAAGGTAGAAATGTGCGAAAAATTTGGAAAAATTGCACTAAAAATGATATTAATTACCTAAAAAATCACCTAAAAACCCCAAAAAAACAGCCCATTTTCCATAGGTAGGAGGTAGAAATCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13509</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>342834</contig_pos>
        <strand>+</strand>
        <context>GACCGTGAAT[C/T]GCGAGAATCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTTCTCTAAATTTCCAATGTTTTCAGACAAAACGAGCGGACCGTGAAT</left_flank>
        <right_flank>GCGAGAATCCGAGGCGACGAAGGAGACGAAACGAGTGATTCTAGATGAGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCCTAGAAATCCAAAACTCGGCCACAAGCTTTTACTGCTTTTCATGTAGTTTAAAATCCTCGAAGTCCGGTCAAAAAACCCCATAAAAATGCCCATTTTTAGTATTTTTTGTTGGTGGCCTAACTTTTCCAAGTCATGGCCTAGAAATTCAAAACTAGGCCAGGAGGCTATTACTGCGTTCCAAGTAGCTCAAAATCCCCGAAATAGCGTTAAAAAACTATGAAAAACAACCCATTTTTCCCCTGGTGGCCTAACTTTTCCAAATGGTGGCCTAGGAATCCAAAACTCGGCCACAAGCTTTTACTGCTTTCCAAGCAGTTCAAAATCCTCAAAATCCTGTTAAAAAACCCCAAAAAACCACTCATTTTTAGCCATTTTTCCTTGATGACCTAACTTTTTGAAGCCATGGCCTAGAAATCACAAAACTAGGCCATAGCGATTCAGAAGTGATTTCTCTAAATTTCCAATGTTTTCAGACAAAACGAGCGGACCGTGAATTGCGAGAATCCGAGGCGACGAAGGAGACGAAACGAGTGATTCTAGATGAGATCCACGTGGAGCTGGAGAAGCGGAATCTGGAGAAGAAGGCGGCCGAGGAGGAGGTCAAACGGGCTATCGAACGATCGTCGGGCTTCGTGAATCGAGAGAATCTGGAAAAGAAGATTCTGGAGGCACTGGAGACGCCGACGATCTACGACTTCGCTATCGATCGAGCTGGAAATAAGTACTTCGTGCCACAACCGGTTAAATATCAAGAGGGAACACCGACACGACAGAAGGGACGGTTGTATGATCAGACACTGGGGACACAGATGGGAATGATGGAGGAAGCGGCTGCTAGTGGAGAGAACAGGCAGATGGAGCAGTAGAAGGTAGAAATGTGCGAAAAATTTGGAAAAATTGCACTAAAAATGATATTAATTACCTAAAAAATCACCTAAAAACCCCAAAAAAACAGCCCATTTTCCATAGGTAGGAGGTAGAAATCTGCGAAAAATT</canonical>
            <polymorphic>GGCCTAGAAATCCAAAACTCGGCCACAAGCTTTTACTGCTTTTCATGTAGTTTAAAATCCTCGAAGTCCGGTCAAAAAACCCCATAAAAATGCCCATTTTTAGTATTTTTTGTTGGTGGCCTAACTTTTCCAAGTCATGGCCTAGAAATTCAAAACTAGGCCAGGAGGCTATTACTGCGTTCCAAGTAGCTCAAAATCCCCGAAATAGCGTTAAAAAACTATGAAAAACAACCCATTTTTCCCCTGGTGGCCTAACTTTTCCAAATGGTGGCCTAGGAATCCAAAACTCGGCCACAAGCTTTTACTGCTTTCCAAGCAGTTCAAAATCCTCAAAATCCTGTTAAAAAACCCCAAAAAACCACTCATTTTTAGCCATTTTTCCTTGATGACCTAACTTTTTGAAGCCATGGCCTAGAAATCACAAAACTAGGCCATAGCGATTCAGAAGTGATTTCTCTAAATTTCCAATGTTTTCAGACAAAACGAGCGGACCGTGAATYGCGAGAATCCGAGGCGACGAAGGAGACGAAACGAGTGATTCTAGATGAGATCCACGTGGAGCTGGAGAAGCGGAATCTGGAGAAGAAGGCGGCCGAGGAGGAGGTCAAACGGGCTATCGAACGATCGTCGGGCTTCGTGAATCGAGAGAATCTGGAAAAGAAGATTCTGGAGGCACTGGAGACGCCGACGATCTACGACTTCGCTATCGATCGAGCTGGAAATAAGTACTTCGTGCCACAACCGGTTAAATATCAAGAGGGAACACCGACACGACAGAAGGGACGGTTGTATGATCAGACACTGGGGACACAGATGGGAATGATGGAGGAAGCGGCTGCTAGTGGAGAGAACAGGCAGATGGAGCAGTAGAAGGTAGAAATGTGCGAAAAATTTGGAAAAATTGCACTAAAAATGATATTAATTACCTAAAAAATCACCTAAAAACCCCAAAAAAACAGCCCATTTTCCATAGGTAGGAGGTAGAAATCTGCGAAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>393 313 146 76 37 21 10 4</canonical_bands>
                <polymorphic_bands>430 313 146 76 21 10 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCTAGAAATCACAAAACTAGG</pcr_primer_p1>
		<pcr_primer_p2>TTTTCCAGATTCTCTCGATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCCTAGAAATCACAAAACTAGGCCATAGCGATTCAGAAGTGATTTCTCTAAATTTCCAATGTTTTCAGACAAAACGAGCGGACCGTGAATTGCGAGAATCCGAGGCGACGAAGGAGACGAAACGAGTGATTCTAGATGAGATCCACGTGGAGCTGGAGAAGCGGAATCTGGAGAAGAAGGCGGCCGAGGAGGAGGTCAAACGGGCTATCGAACGATCGTCGGGCTTCGTGAATCGAGAGAATCTGGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GCCTAGAAATCACAAAACTAGGCCATAGCGATTCAGAAGTGATTTCTCTAAATTTCCAATGTTTTCAGACAAAACGAGCGGACCGTGAATYGCGAGAATCCGAGGCGACGAAGGAGACGAAACGAGTGATTCTAGATGAGATCCACGTGGAGCTGGAGAAGCGGAATCTGGAGAAGAAGGCGGCCGAGGAGGAGGTCAAACGGGCTATCGAACGATCGTCGGGCTTCGTGAATCGAGAGAATCTGGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13510</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>342808</contig_pos>
        <strand>+</strand>
        <context>TCCAATGTTT[C/T]CAGACAAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACTAGGCCATAGCGATTCAGAAGTGATTTCTCTAAATTTCCAATGTTT</left_flank>
        <right_flank>CAGACAAAACGAGCGGACCGTGAATTGCGAGAATCCGAGGCGACGAAGGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGTGGCCTAACTTTTTGAAGCCATGGCCTAGAAATCCAAAACTCGGCCACAAGCTTTTACTGCTTTTCATGTAGTTTAAAATCCTCGAAGTCCGGTCAAAAAACCCCATAAAAATGCCCATTTTTAGTATTTTTTGTTGGTGGCCTAACTTTTCCAAGTCATGGCCTAGAAATTCAAAACTAGGCCAGGAGGCTATTACTGCGTTCCAAGTAGCTCAAAATCCCCGAAATAGCGTTAAAAAACTATGAAAAACAACCCATTTTTCCCCTGGTGGCCTAACTTTTCCAAATGGTGGCCTAGGAATCCAAAACTCGGCCACAAGCTTTTACTGCTTTCCAAGCAGTTCAAAATCCTCAAAATCCTGTTAAAAAACCCCAAAAAACCACTCATTTTTAGCCATTTTTCCTTGATGACCTAACTTTTTGAAGCCATGGCCTAGAAATCACAAAACTAGGCCATAGCGATTCAGAAGTGATTTCTCTAAATTTCCAATGTTTTCAGACAAAACGAGCGGACCGTGAATTGCGAGAATCCGAGGCGACGAAGGAGACGAAACGAGTGATTCTAGATGAGATCCACGTGGAGCTGGAGAAGCGGAATCTGGAGAAGAAGGCGGCCGAGGAGGAGGTCAAACGGGCTATCGAACGATCGTCGGGCTTCGTGAATCGAGAGAATCTGGAAAAGAAGATTCTGGAGGCACTGGAGACGCCGACGATCTACGACTTCGCTATCGATCGAGCTGGAAATAAGTACTTCGTGCCACAACCGGTTAAATATCAAGAGGGAACACCGACACGACAGAAGGGACGGTTGTATGATCAGACACTGGGGACACAGATGGGAATGATGGAGGAAGCGGCTGCTAGTGGAGAGAACAGGCAGATGGAGCAGTAGAAGGTAGAAATGTGCGAAAAATTTGGAAAAATTGCACTAAAAATGATATTAATTACCTAAAAAATCACCTAAAAACCCCAAAAAAACAGCCCATTTTCCATAGG</canonical>
            <polymorphic>TTGGTGGCCTAACTTTTTGAAGCCATGGCCTAGAAATCCAAAACTCGGCCACAAGCTTTTACTGCTTTTCATGTAGTTTAAAATCCTCGAAGTCCGGTCAAAAAACCCCATAAAAATGCCCATTTTTAGTATTTTTTGTTGGTGGCCTAACTTTTCCAAGTCATGGCCTAGAAATTCAAAACTAGGCCAGGAGGCTATTACTGCGTTCCAAGTAGCTCAAAATCCCCGAAATAGCGTTAAAAAACTATGAAAAACAACCCATTTTTCCCCTGGTGGCCTAACTTTTCCAAATGGTGGCCTAGGAATCCAAAACTCGGCCACAAGCTTTTACTGCTTTCCAAGCAGTTCAAAATCCTCAAAATCCTGTTAAAAAACCCCAAAAAACCACTCATTTTTAGCCATTTTTCCTTGATGACCTAACTTTTTGAAGCCATGGCCTAGAAATCACAAAACTAGGCCATAGCGATTCAGAAGTGATTTCTCTAAATTTCCAATGTTTYCAGACAAAACGAGCGGACCGTGAATTGCGAGAATCCGAGGCGACGAAGGAGACGAAACGAGTGATTCTAGATGAGATCCACGTGGAGCTGGAGAAGCGGAATCTGGAGAAGAAGGCGGCCGAGGAGGAGGTCAAACGGGCTATCGAACGATCGTCGGGCTTCGTGAATCGAGAGAATCTGGAAAAGAAGATTCTGGAGGCACTGGAGACGCCGACGATCTACGACTTCGCTATCGATCGAGCTGGAAATAAGTACTTCGTGCCACAACCGGTTAAATATCAAGAGGGAACACCGACACGACAGAAGGGACGGTTGTATGATCAGACACTGGGGACACAGATGGGAATGATGGAGGAAGCGGCTGCTAGTGGAGAGAACAGGCAGATGGAGCAGTAGAAGGTAGAAATGTGCGAAAAATTTGGAAAAATTGCACTAAAAATGATATTAATTACCTAAAAAATCACCTAAAAACCCCAAAAAAACAGCCCATTTTCCATAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>470 287 177 34 32</canonical_bands>
                <polymorphic_bands>470 287 177 66</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCTAGAAATCACAAAACTAGG</pcr_primer_p1>
		<pcr_primer_p2>TTTTCCAGATTCTCTCGATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCCTAGAAATCACAAAACTAGGCCATAGCGATTCAGAAGTGATTTCTCTAAATTTCCAATGTTTTCAGACAAAACGAGCGGACCGTGAATTGCGAGAATCCGAGGCGACGAAGGAGACGAAACGAGTGATTCTAGATGAGATCCACGTGGAGCTGGAGAAGCGGAATCTGGAGAAGAAGGCGGCCGAGGAGGAGGTCAAACGGGCTATCGAACGATCGTCGGGCTTCGTGAATCGAGAGAATCTGGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GCCTAGAAATCACAAAACTAGGCCATAGCGATTCAGAAGTGATTTCTCTAAATTTCCAATGTTTYCAGACAAAACGAGCGGACCGTGAATTGCGAGAATCCGAGGCGACGAAGGAGACGAAACGAGTGATTCTAGATGAGATCCACGTGGAGCTGGAGAAGCGGAATCTGGAGAAGAAGGCGGCCGAGGAGGAGGTCAAACGGGCTATCGAACGATCGTCGGGCTTCGTGAATCGAGAGAATCTGGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13511</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>350834</contig_pos>
        <strand>+</strand>
        <context>CGGCTGGCGC[A/T]GTGACYTATG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGACCATCATTGAAAAGTGCCAAAAAGCGCAAAGTGACACGGCTGGCGC</left_flank>
        <right_flank>GTGACTTATGATAAGAAGAATCGATTGGCTGTGTCGAATTTGGTAGGTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCAAATTATCATTAGAGCGCGTTTGCTAAAACTGGCTGAAAATACACCCAAATGACCTAAAATTGATTAGGAATGGCTTAGAATGGCCTAATATAGCCGAAAATGTGATTTTCAGCGATTTTCAGCAAAATTATCAATAGAGCGCATTTGCTAAAATGGTCAAAAATTGACTAGAATTTACTACAAACTACCTGAAATTAACCAGAAATGGCTTAGAATGGCTTAAAATAGCCGAAAATGTGATTTTCAGCGATTTTGAGCGAAAGTCTCATTAGAGCGCGTTTGTTAAAATGGTCCAAAATTGACTAAAATAGATCCCAAACCACCTGAAGTCCATTCTAAATGGCTGAAAATAGCCCAAAGTAGACGAAAATTTCATTTTCAGCGATTTTCCAGGAAATTCTCATTAGAGCACATTTGCTACTTTTTTCAGATCACCGACTCCCGTGAGACCATCATTGAAAAGTGCCAAAAAGCGCAAAGTGACACGGCTGGCGCTGTGACTTATGATAAGAAGAATCGATTGGCTGTGTCGAATTTGGTAGGTCAAAGAATTGGAAAATGCGCTCCAATGAGAAAAGTTGGGAAAAGTCGATTTTTTGGCGGGTTTTCGAGCGGAATTTTTGATAAATTGGCAATTAGAGCGAATTTGAGGCTCTCTGAAATTGGTAGATTGCAAAAATTTTTCAAAAAAATGTGGAAAACGCGCTCCAATGAGAAAAGTTGGGAAAATTCGATTTTTTTTTGGCGGTTTTTTGAATTCCCGCTCAAATTTTTCGGCAATTCTCAACAGAGCGAATTTGCAGCTCGATCTCTACTCGGCGATCACCAAGACGCCACTCTCGGAAATCGACTATTCCAGCTGGTCGACGCTGGACCTGAAAATGAATTTGGCCGAAAAAATCGATAATCGGCTGGAGCCGATTAGAGAGAAATTCGAGGAGCTGGAGAATAGTGAAGAGGTGCGGGCTGGCGGGAATTTGAAGTTTTCAAGTTTTC</canonical>
            <polymorphic>ACCAAATTATCATTAGAGCGCGTTTGCTAAAACTGGCTGAAAATACACCCAAATGACCTAAAATTGATTAGGAATGGCTTAGAATGGCCTAATATAGCCGAAAATGTGATTTTCAGCGATTTTCAGCAAAATTATCAATAGAGCGCATTTGCTAAAATGGTCAAAAATTGACTAGAATTTACTACAAACTACCTGAAATTAACCAGAAATGGCTTAGAATGGCTTAAAATAGCCGAAAATGTGATTTTCAGCGATTTTGAGCGAAAGTCTCATTAGAGCGCGTTTGTTAAAATGGTCCAAAATTGACTAAAATAGATCCCAAACCACCTGAAGTCCATTCTAAATGGCTGAAAATAGCCCAAAGTAGACGAAAATTTCATTTTCAGCGATTTTCCAGGAAATTCTCATTAGAGCACATTTGCTACTTTTTTCAGATCACCGACTCCCGTGAGACCATCATTGAAAAGTGCCAAAAAGCGCAAAGTGACACGGCTGGCGCWGTGACTTATGATAAGAAGAATCGATTGGCTGTGTCGAATTTGGTAGGTCAAAGAATTGGAAAATGCGCTCCAATGAGAAAAGTTGGGAAAAGTCGATTTTTTGGCGGGTTTTCGAGCGGAATTTTTGATAAATTGGCAATTAGAGCGAATTTGAGGCTCTCTGAAATTGGTAGATTGCAAAAATTTTTCAAAAAAATGTGGAAAACGCGCTCCAATGAGAAAAGTTGGGAAAATTCGATTTTTTTTTGGCGGTTTTTTGAATTCCCGCTCAAATTTTTCGGCAATTCTCAACAGAGCGAATTTGCAGCTCGATCTCTACTCGGCGATCACCAAGACGCCACTCTCGGAAATCGACTATTCCAGCTGGTCGACGCTGGACCTGAAAATGAATTTGGCCGAAAAAATCGATAATCGGCTGGAGCCGATTAGAGAGAAATTCGAGGAGCTGGAGAATAGTGAAGAGGTGCGGGCTGGCGGGAATTTGAAGTTTTCAAGTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGAGCACATTTGCTACTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTCAGAGAGCCTCAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>TTAGAGCACATTTGCTACTTTTTTCAGATCACCGACTCCCGTGAGACCATCATTGAAAAGTGCCAAAAAGCGCAAAGTGACACGGCTGGCGCTGTGACTTATGATAAGAAGAATCGATTGGCTGTGTCGAATTTGGTAGGTCAAAGAATTGGAAAATGCGCTCCAATGAGAAAAGTTGGGAAAAGTCGATTTTTTGGCGGGTTTTCGAGCGGAATTTTTGATAAATTGGCAATTAGAGCGAATTTGAGGCTCTCTGAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTAGAGCACATTTGCTACTTTTTTCAGATCACCGACTCCCGTGAGACCATCATTGAAAAGTGCCAAAAAGCGCAAAGTGACACGGCTGGCGCWGTGACTTATGATAAGAAGAATCGATTGGCTGTGTCGAATTTGGTAGGTCAAAGAATTGGAAAATGCGCTCCAATGAGAAAAGTTGGGAAAAGTCGATTTTTTGGCGGGTTTTCGAGCGGAATTTTTGATAAATTGGCAATTAGAGCGAATTTGAGGCTCTCTGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13512</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>350840</contig_pos>
        <strand>+</strand>
        <context>GCGCWGTGAC[C/T]TATGATAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCATTGAAAAGTGCCAAAAAGCGCAAAGTGACACGGCTGGCGCTGTGAC</left_flank>
        <right_flank>TATGATAAGAAGAATCGATTGGCTGTGTCGAATTTGGTAGGTCAAAGAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATCATTAGAGCGCGTTTGCTAAAACTGGCTGAAAATACACCCAAATGACCTAAAATTGATTAGGAATGGCTTAGAATGGCCTAATATAGCCGAAAATGTGATTTTCAGCGATTTTCAGCAAAATTATCAATAGAGCGCATTTGCTAAAATGGTCAAAAATTGACTAGAATTTACTACAAACTACCTGAAATTAACCAGAAATGGCTTAGAATGGCTTAAAATAGCCGAAAATGTGATTTTCAGCGATTTTGAGCGAAAGTCTCATTAGAGCGCGTTTGTTAAAATGGTCCAAAATTGACTAAAATAGATCCCAAACCACCTGAAGTCCATTCTAAATGGCTGAAAATAGCCCAAAGTAGACGAAAATTTCATTTTCAGCGATTTTCCAGGAAATTCTCATTAGAGCACATTTGCTACTTTTTTCAGATCACCGACTCCCGTGAGACCATCATTGAAAAGTGCCAAAAAGCGCAAAGTGACACGGCTGGCGCTGTGACTTATGATAAGAAGAATCGATTGGCTGTGTCGAATTTGGTAGGTCAAAGAATTGGAAAATGCGCTCCAATGAGAAAAGTTGGGAAAAGTCGATTTTTTGGCGGGTTTTCGAGCGGAATTTTTGATAAATTGGCAATTAGAGCGAATTTGAGGCTCTCTGAAATTGGTAGATTGCAAAAATTTTTCAAAAAAATGTGGAAAACGCGCTCCAATGAGAAAAGTTGGGAAAATTCGATTTTTTTTTGGCGGTTTTTTGAATTCCCGCTCAAATTTTTCGGCAATTCTCAACAGAGCGAATTTGCAGCTCGATCTCTACTCGGCGATCACCAAGACGCCACTCTCGGAAATCGACTATTCCAGCTGGTCGACGCTGGACCTGAAAATGAATTTGGCCGAAAAAATCGATAATCGGCTGGAGCCGATTAGAGAGAAATTCGAGGAGCTGGAGAATAGTGAAGAGGTGCGGGCTGGCGGGAATTTGAAGTTTTCAAGTTTTCAAGAAA</canonical>
            <polymorphic>TTATCATTAGAGCGCGTTTGCTAAAACTGGCTGAAAATACACCCAAATGACCTAAAATTGATTAGGAATGGCTTAGAATGGCCTAATATAGCCGAAAATGTGATTTTCAGCGATTTTCAGCAAAATTATCAATAGAGCGCATTTGCTAAAATGGTCAAAAATTGACTAGAATTTACTACAAACTACCTGAAATTAACCAGAAATGGCTTAGAATGGCTTAAAATAGCCGAAAATGTGATTTTCAGCGATTTTGAGCGAAAGTCTCATTAGAGCGCGTTTGTTAAAATGGTCCAAAATTGACTAAAATAGATCCCAAACCACCTGAAGTCCATTCTAAATGGCTGAAAATAGCCCAAAGTAGACGAAAATTTCATTTTCAGCGATTTTCCAGGAAATTCTCATTAGAGCACATTTGCTACTTTTTTCAGATCACCGACTCCCGTGAGACCATCATTGAAAAGTGCCAAAAAGCGCAAAGTGACACGGCTGGCGCTGTGACYTATGATAAGAAGAATCGATTGGCTGTGTCGAATTTGGTAGGTCAAAGAATTGGAAAATGCGCTCCAATGAGAAAAGTTGGGAAAAGTCGATTTTTTGGCGGGTTTTCGAGCGGAATTTTTGATAAATTGGCAATTAGAGCGAATTTGAGGCTCTCTGAAATTGGTAGATTGCAAAAATTTTTCAAAAAAATGTGGAAAACGCGCTCCAATGAGAAAAGTTGGGAAAATTCGATTTTTTTTTGGCGGTTTTTTGAATTCCCGCTCAAATTTTTCGGCAATTCTCAACAGAGCGAATTTGCAGCTCGATCTCTACTCGGCGATCACCAAGACGCCACTCTCGGAAATCGACTATTCCAGCTGGTCGACGCTGGACCTGAAAATGAATTTGGCCGAAAAAATCGATAATCGGCTGGAGCCGATTAGAGAGAAATTCGAGGAGCTGGAGAATAGTGAAGAGGTGCGGGCTGGCGGGAATTTGAAGTTTTCAAGTTTTCAAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGAGCACATTTGCTACTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTCAGAGAGCCTCAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>TTAGAGCACATTTGCTACTTTTTTCAGATCACCGACTCCCGTGAGACCATCATTGAAAAGTGCCAAAAAGCGCAAAGTGACACGGCTGGCGCTGTGACTTATGATAAGAAGAATCGATTGGCTGTGTCGAATTTGGTAGGTCAAAGAATTGGAAAATGCGCTCCAATGAGAAAAGTTGGGAAAAGTCGATTTTTTGGCGGGTTTTCGAGCGGAATTTTTGATAAATTGGCAATTAGAGCGAATTTGAGGCTCTCTGAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTAGAGCACATTTGCTACTTTTTTCAGATCACCGACTCCCGTGAGACCATCATTGAAAAGTGCCAAAAAGCGCAAAGTGACACGGCTGGCGCTGTGACYTATGATAAGAAGAATCGATTGGCTGTGTCGAATTTGGTAGGTCAAAGAATTGGAAAATGCGCTCCAATGAGAAAAGTTGGGAAAAGTCGATTTTTTGGCGGGTTTTCGAGCGGAATTTTTGATAAATTGGCAATTAGAGCGAATTTGAGGCTCTCTGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13513</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>350964</contig_pos>
        <strand>+</strand>
        <context>AATTTTTGAT[A/T]AATTGGCAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGTTGGGAAAAGTCGATTTTTTGGCGGGTTTTCGAGCGGAATTTTTGAT</left_flank>
        <right_flank>AATTGGCAATTAGAGCGAATTTGAGGCTCTCTGAAATTGGTAGATTGCAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATCAATAGAGCGCATTTGCTAAAATGGTCAAAAATTGACTAGAATTTACTACAAACTACCTGAAATTAACCAGAAATGGCTTAGAATGGCTTAAAATAGCCGAAAATGTGATTTTCAGCGATTTTGAGCGAAAGTCTCATTAGAGCGCGTTTGTTAAAATGGTCCAAAATTGACTAAAATAGATCCCAAACCACCTGAAGTCCATTCTAAATGGCTGAAAATAGCCCAAAGTAGACGAAAATTTCATTTTCAGCGATTTTCCAGGAAATTCTCATTAGAGCACATTTGCTACTTTTTTCAGATCACCGACTCCCGTGAGACCATCATTGAAAAGTGCCAAAAAGCGCAAAGTGACACGGCTGGCGCTGTGACTTATGATAAGAAGAATCGATTGGCTGTGTCGAATTTGGTAGGTCAAAGAATTGGAAAATGCGCTCCAATGAGAAAAGTTGGGAAAAGTCGATTTTTTGGCGGGTTTTCGAGCGGAATTTTTGATAAATTGGCAATTAGAGCGAATTTGAGGCTCTCTGAAATTGGTAGATTGCAAAAATTTTTCAAAAAAATGTGGAAAACGCGCTCCAATGAGAAAAGTTGGGAAAATTCGATTTTTTTTTGGCGGTTTTTTGAATTCCCGCTCAAATTTTTCGGCAATTCTCAACAGAGCGAATTTGCAGCTCGATCTCTACTCGGCGATCACCAAGACGCCACTCTCGGAAATCGACTATTCCAGCTGGTCGACGCTGGACCTGAAAATGAATTTGGCCGAAAAAATCGATAATCGGCTGGAGCCGATTAGAGAGAAATTCGAGGAGCTGGAGAATAGTGAAGAGGTGCGGGCTGGCGGGAATTTGAAGTTTTCAAGTTTTCAAGAAAAAGAAAAAATTTTTTTTTGAAAAATATCGATTTTTTGGAATTTTTCGAAAATTTTCAAATTTTTCAAAAATCGATTTTTTTTTCAGATCGACAAAATTCTAGAACGGAATGGCGACGCGGCGCG</canonical>
            <polymorphic>ATTATCAATAGAGCGCATTTGCTAAAATGGTCAAAAATTGACTAGAATTTACTACAAACTACCTGAAATTAACCAGAAATGGCTTAGAATGGCTTAAAATAGCCGAAAATGTGATTTTCAGCGATTTTGAGCGAAAGTCTCATTAGAGCGCGTTTGTTAAAATGGTCCAAAATTGACTAAAATAGATCCCAAACCACCTGAAGTCCATTCTAAATGGCTGAAAATAGCCCAAAGTAGACGAAAATTTCATTTTCAGCGATTTTCCAGGAAATTCTCATTAGAGCACATTTGCTACTTTTTTCAGATCACCGACTCCCGTGAGACCATCATTGAAAAGTGCCAAAAAGCGCAAAGTGACACGGCTGGCGCTGTGACTTATGATAAGAAGAATCGATTGGCTGTGTCGAATTTGGTAGGTCAAAGAATTGGAAAATGCGCTCCAATGAGAAAAGTTGGGAAAAGTCGATTTTTTGGCGGGTTTTCGAGCGGAATTTTTGATWAATTGGCAATTAGAGCGAATTTGAGGCTCTCTGAAATTGGTAGATTGCAAAAATTTTTCAAAAAAATGTGGAAAACGCGCTCCAATGAGAAAAGTTGGGAAAATTCGATTTTTTTTTGGCGGTTTTTTGAATTCCCGCTCAAATTTTTCGGCAATTCTCAACAGAGCGAATTTGCAGCTCGATCTCTACTCGGCGATCACCAAGACGCCACTCTCGGAAATCGACTATTCCAGCTGGTCGACGCTGGACCTGAAAATGAATTTGGCCGAAAAAATCGATAATCGGCTGGAGCCGATTAGAGAGAAATTCGAGGAGCTGGAGAATAGTGAAGAGGTGCGGGCTGGCGGGAATTTGAAGTTTTCAAGTTTTCAAGAAAAAGAAAAAATTTTTTTTTGAAAAATATCGATTTTTTGGAATTTTTCGAAAATTTTCAAATTTTTCAAAAATCGATTTTTTTTTCAGATCGACAAAATTCTAGAACGGAATGGCGACGCGGCGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAGAAAAGTTGGGAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GTAGAGATCGAGCTGCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATGAGAAAAGTTGGGAAAAGTCGATTTTTTGGCGGGTTTTCGAGCGGAATTTTTGATAAATTGGCAATTAGAGCGAATTTGAGGCTCTCTGAAATTGGTAGATTGCAAAAATTTTTCAAAAAAATGTGGAAAACGCGCTCCAATGAGAAAAGTTGGGAAAATTCGATTTTTTTTTGGCGGTTTTTTGAATTCCCGCTCAAATTTTTCGGCAATTCTCAACAGAGCGAATTTGCAGCTCGATCTCTAC</canonical_amplicon>
		<polymorphic_amplicon>AATGAGAAAAGTTGGGAAAAGTCGATTTTTTGGCGGGTTTTCGAGCGGAATTTTTGATWAATTGGCAATTAGAGCGAATTTGAGGCTCTCTGAAATTGGTAGATTGCAAAAATTTTTCAAAAAAATGTGGAAAACGCGCTCCAATGAGAAAAGTTGGGAAAATTCGATTTTTTTTTGGCGGTTTTTTGAATTCCCGCTCAAATTTTTCGGCAATTCTCAACAGAGCGAATTTGCAGCTCGATCTCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13514</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>361392</contig_pos>
        <strand>+</strand>
        <context>AGCGAAAACT[C/T]GTCACAATTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGCTCATTAGGCATCAGTAGGGAACCAACCCCGTAGCTCAGCGAAAACT</left_flank>
        <right_flank>GTCACAATTATTTGAATTTTACATTGTTTTGTAGCCCTTAAAAAGTTCTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAAATGTGTAAAATTCAATTTTCTACATTTTATCAGTTAACAACTTTTTGATATCCTAATTGGAAGCGGAGATAATTGAGGTCAAAGTTACTAATCATCTATTTTTCTTTCAAACTTCAACTGACACCGCTATATCCGATTGAAAAAGGGCAAAAAAAGGTTTAAACGAAAAAAAGAAAATTTATAATAAATGAAGATGATGATTGATCTTGACATATATATCTAGTACTATTAAGAAGAAGAAAATCGAATTACGGCGGTAAAAAAGGGCGGCAAATGAAAGGAATTGTTGACCTCATGCTAAAGAAGAGGGGACGAGTAAAAAAAGAAAATAAATAAGAAGAAAAAGAAGACCAGTTGATCTTTGATCAGTGAGACTTCAAAAAGAAGACAACATAAATAACTGGTAAGCTATAGAAGACACTAGAGTTGTTTACGATGACTGCGCAGCTCATTAGGCATCAGTAGGGAACCAACCCCGTAGCTCAGCGAAAACTCGTCACAATTATTTGAATTTTACATTGTTTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTAGAGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACCGCCGCTACCGAATTGAGCTGCGCGGTCGACTTCGGCACGTAGCTTAGCGAAAACAGCGCGTAGCTCAGCGATAGCTTGTTCAAAATTAGTCAACGTTAATTTTTTTTGTAGCCCTTAACTAGCTGTACATTTTCCAGGTTAGATTGTTTAAAAATATTGATTTTTAAAAAAGTTATGAGCTAAAACCTGCCAAGGTTCCCAAAAATAGGTTTGAAAAATC</canonical>
            <polymorphic>ATAAAATGTGTAAAATTCAATTTTCTACATTTTATCAGTTAACAACTTTTTGATATCCTAATTGGAAGCGGAGATAATTGAGGTCAAAGTTACTAATCATCTATTTTTCTTTCAAACTTCAACTGACACCGCTATATCCGATTGAAAAAGGGCAAAAAAAGGTTTAAACGAAAAAAAGAAAATTTATAATAAATGAAGATGATGATTGATCTTGACATATATATCTAGTACTATTAAGAAGAAGAAAATCGAATTACGGCGGTAAAAAAGGGCGGCAAATGAAAGGAATTGTTGACCTCATGCTAAAGAAGAGGGGACGAGTAAAAAAAGAAAATAAATAAGAAGAAAAAGAAGACCAGTTGATCTTTGATCAGTGAGACTTCAAAAAGAAGACAACATAAATAACTGGTAAGCTATAGAAGACACTAGAGTTGTTTACGATGACTGCGCAGCTCATTAGGCATCAGTAGGGAACCAACCCCGTAGCTCAGCGAAAACTYGTCACAATTATTTGAATTTTACATTGTTTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTAGAGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACCGCCGCTACCGAATTGAGCTGCGCGGTCGACTTCGGCACGTAGCTTAGCGAAAACAGCGCGTAGCTCAGCGATAGCTTGTTCAAAATTAGTCAACGTTAATTTTTTTTGTAGCCCTTAACTAGCTGTACATTTTCCAGGTTAGATTGTTTAAAAATATTGATTTTTAAAAAAGTTATGAGCTAAAACCTGCCAAGGTTCCCAAAAATAGGTTTGAAAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGAGTTGTTTACGATGACTGC</pcr_primer_p1>
		<pcr_primer_p2>ACAAGTTTTCGCTGAGCTAC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CTAGAGTTGTTTACGATGACTGCGCAGCTCATTAGGCATCAGTAGGGAACCAACCCCGTAGCTCAGCGAAAACTCGTCACAATTATTTGAATTTTACATTGTTTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTAGAGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGT</canonical_amplicon>
		<polymorphic_amplicon>CTAGAGTTGTTTACGATGACTGCGCAGCTCATTAGGCATCAGTAGGGAACCAACCCCGTAGCTCAGCGAAAACTYGTCACAATTATTTGAATTTTACATTGTTTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTAGAGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13515</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>361419</contig_pos>
        <strand>+</strand>
        <context>TTTTACATTG[C/T]TTTGTAGCCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACCCCGTAGCTCAGCGAAAACTCGTCACAATTATTTGAATTTTACATTG</left_flank>
        <right_flank>TTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTTATCAGTTAACAACTTTTTGATATCCTAATTGGAAGCGGAGATAATTGAGGTCAAAGTTACTAATCATCTATTTTTCTTTCAAACTTCAACTGACACCGCTATATCCGATTGAAAAAGGGCAAAAAAAGGTTTAAACGAAAAAAAGAAAATTTATAATAAATGAAGATGATGATTGATCTTGACATATATATCTAGTACTATTAAGAAGAAGAAAATCGAATTACGGCGGTAAAAAAGGGCGGCAAATGAAAGGAATTGTTGACCTCATGCTAAAGAAGAGGGGACGAGTAAAAAAAGAAAATAAATAAGAAGAAAAAGAAGACCAGTTGATCTTTGATCAGTGAGACTTCAAAAAGAAGACAACATAAATAACTGGTAAGCTATAGAAGACACTAGAGTTGTTTACGATGACTGCGCAGCTCATTAGGCATCAGTAGGGAACCAACCCCGTAGCTCAGCGAAAACTCGTCACAATTATTTGAATTTTACATTGTTTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTAGAGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACCGCCGCTACCGAATTGAGCTGCGCGGTCGACTTCGGCACGTAGCTTAGCGAAAACAGCGCGTAGCTCAGCGATAGCTTGTTCAAAATTAGTCAACGTTAATTTTTTTTGTAGCCCTTAACTAGCTGTACATTTTCCAGGTTAGATTGTTTAAAAATATTGATTTTTAAAAAAGTTATGAGCTAAAACCTGCCAAGGTTCCCAAAAATAGGTTTGAAAAATCGAAAATTCGAAATTCAAAAGTTCAAAT</canonical>
            <polymorphic>CATTTTATCAGTTAACAACTTTTTGATATCCTAATTGGAAGCGGAGATAATTGAGGTCAAAGTTACTAATCATCTATTTTTCTTTCAAACTTCAACTGACACCGCTATATCCGATTGAAAAAGGGCAAAAAAAGGTTTAAACGAAAAAAAGAAAATTTATAATAAATGAAGATGATGATTGATCTTGACATATATATCTAGTACTATTAAGAAGAAGAAAATCGAATTACGGCGGTAAAAAAGGGCGGCAAATGAAAGGAATTGTTGACCTCATGCTAAAGAAGAGGGGACGAGTAAAAAAAGAAAATAAATAAGAAGAAAAAGAAGACCAGTTGATCTTTGATCAGTGAGACTTCAAAAAGAAGACAACATAAATAACTGGTAAGCTATAGAAGACACTAGAGTTGTTTACGATGACTGCGCAGCTCATTAGGCATCAGTAGGGAACCAACCCCGTAGCTCAGCGAAAACTCGTCACAATTATTTGAATTTTACATTGYTTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTAGAGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACCGCCGCTACCGAATTGAGCTGCGCGGTCGACTTCGGCACGTAGCTTAGCGAAAACAGCGCGTAGCTCAGCGATAGCTTGTTCAAAATTAGTCAACGTTAATTTTTTTTGTAGCCCTTAACTAGCTGTACATTTTCCAGGTTAGATTGTTTAAAAATATTGATTTTTAAAAAAGTTATGAGCTAAAACCTGCCAAGGTTCCCAAAAATAGGTTTGAAAAATCGAAAATTCGAAATTCAAAAGTTCAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGAGTTGTTTACGATGACTGC</pcr_primer_p1>
		<pcr_primer_p2>ACAAGTTTTCGCTGAGCTAC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CTAGAGTTGTTTACGATGACTGCGCAGCTCATTAGGCATCAGTAGGGAACCAACCCCGTAGCTCAGCGAAAACTCGTCACAATTATTTGAATTTTACATTGTTTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTAGAGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGT</canonical_amplicon>
		<polymorphic_amplicon>CTAGAGTTGTTTACGATGACTGCGCAGCTCATTAGGCATCAGTAGGGAACCAACCCCGTAGCTCAGCGAAAACTCGTCACAATTATTTGAATTTTACATTGYTTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTAGAGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13516</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>361445</contig_pos>
        <strand>+</strand>
        <context>AAGTTCTATA[C/T]ACTGTACWTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACAATTATTTGAATTTTACATTGTTTTGTAGCCCTTAAAAAGTTCTATA</left_flank>
        <right_flank>ACTGTACATTATTTGAGCTTAAAAGGTAGAGCTTAAAGCAAGTTACGCCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCCTAATTGGAAGCGGAGATAATTGAGGTCAAAGTTACTAATCATCTATTTTTCTTTCAAACTTCAACTGACACCGCTATATCCGATTGAAAAAGGGCAAAAAAAGGTTTAAACGAAAAAAAGAAAATTTATAATAAATGAAGATGATGATTGATCTTGACATATATATCTAGTACTATTAAGAAGAAGAAAATCGAATTACGGCGGTAAAAAAGGGCGGCAAATGAAAGGAATTGTTGACCTCATGCTAAAGAAGAGGGGACGAGTAAAAAAAGAAAATAAATAAGAAGAAAAAGAAGACCAGTTGATCTTTGATCAGTGAGACTTCAAAAAGAAGACAACATAAATAACTGGTAAGCTATAGAAGACACTAGAGTTGTTTACGATGACTGCGCAGCTCATTAGGCATCAGTAGGGAACCAACCCCGTAGCTCAGCGAAAACTCGTCACAATTATTTGAATTTTACATTGTTTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTAGAGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACCGCCGCTACCGAATTGAGCTGCGCGGTCGACTTCGGCACGTAGCTTAGCGAAAACAGCGCGTAGCTCAGCGATAGCTTGTTCAAAATTAGTCAACGTTAATTTTTTTTGTAGCCCTTAACTAGCTGTACATTTTCCAGGTTAGATTGTTTAAAAATATTGATTTTTAAAAAAGTTATGAGCTAAAACCTGCCAAGGTTCCCAAAAATAGGTTTGAAAAATCGAAAATTCGAAATTCAAAAGTTCAAATTTGGCGCCAAACCAATGTACTTCAAC</canonical>
            <polymorphic>TATCCTAATTGGAAGCGGAGATAATTGAGGTCAAAGTTACTAATCATCTATTTTTCTTTCAAACTTCAACTGACACCGCTATATCCGATTGAAAAAGGGCAAAAAAAGGTTTAAACGAAAAAAAGAAAATTTATAATAAATGAAGATGATGATTGATCTTGACATATATATCTAGTACTATTAAGAAGAAGAAAATCGAATTACGGCGGTAAAAAAGGGCGGCAAATGAAAGGAATTGTTGACCTCATGCTAAAGAAGAGGGGACGAGTAAAAAAAGAAAATAAATAAGAAGAAAAAGAAGACCAGTTGATCTTTGATCAGTGAGACTTCAAAAAGAAGACAACATAAATAACTGGTAAGCTATAGAAGACACTAGAGTTGTTTACGATGACTGCGCAGCTCATTAGGCATCAGTAGGGAACCAACCCCGTAGCTCAGCGAAAACTCGTCACAATTATTTGAATTTTACATTGTTTTGTAGCCCTTAAAAAGTTCTATAYACTGTACATTATTTGAGCTTAAAAGGTAGAGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACCGCCGCTACCGAATTGAGCTGCGCGGTCGACTTCGGCACGTAGCTTAGCGAAAACAGCGCGTAGCTCAGCGATAGCTTGTTCAAAATTAGTCAACGTTAATTTTTTTTGTAGCCCTTAACTAGCTGTACATTTTCCAGGTTAGATTGTTTAAAAATATTGATTTTTAAAAAAGTTATGAGCTAAAACCTGCCAAGGTTCCCAAAAATAGGTTTGAAAAATCGAAAATTCGAAATTCAAAAGTTCAAATTTGGCGCCAAACCAATGTACTTCAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>248 236 129 95 79 75 50 49 39</canonical_bands>
                <polymorphic_bands>248 236 179 95 79 75 49 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGAGTTGTTTACGATGACTGC</pcr_primer_p1>
		<pcr_primer_p2>ACAAGTTTTCGCTGAGCTAC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CTAGAGTTGTTTACGATGACTGCGCAGCTCATTAGGCATCAGTAGGGAACCAACCCCGTAGCTCAGCGAAAACTCGTCACAATTATTTGAATTTTACATTGTTTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTAGAGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGT</canonical_amplicon>
		<polymorphic_amplicon>CTAGAGTTGTTTACGATGACTGCGCAGCTCATTAGGCATCAGTAGGGAACCAACCCCGTAGCTCAGCGAAAACTCGTCACAATTATTTGAATTTTACATTGTTTTGTAGCCCTTAAAAAGTTCTATAYACTGTACATTATTTGAGCTTAAAAGGTAGAGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13517</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>361453</contig_pos>
        <strand>+</strand>
        <context>TAYACTGTAC[A/T]TTATTTGAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGAATTTTACATTGTTTTGTAGCCCTTAAAAAGTTCTATACACTGTAC</left_flank>
        <right_flank>TTATTTGAGCTTAAAAGGTAGAGCTTAAAGCAAGTTACGCCGCCGCAACC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGAAGCGGAGATAATTGAGGTCAAAGTTACTAATCATCTATTTTTCTTTCAAACTTCAACTGACACCGCTATATCCGATTGAAAAAGGGCAAAAAAAGGTTTAAACGAAAAAAAGAAAATTTATAATAAATGAAGATGATGATTGATCTTGACATATATATCTAGTACTATTAAGAAGAAGAAAATCGAATTACGGCGGTAAAAAAGGGCGGCAAATGAAAGGAATTGTTGACCTCATGCTAAAGAAGAGGGGACGAGTAAAAAAAGAAAATAAATAAGAAGAAAAAGAAGACCAGTTGATCTTTGATCAGTGAGACTTCAAAAAGAAGACAACATAAATAACTGGTAAGCTATAGAAGACACTAGAGTTGTTTACGATGACTGCGCAGCTCATTAGGCATCAGTAGGGAACCAACCCCGTAGCTCAGCGAAAACTCGTCACAATTATTTGAATTTTACATTGTTTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTAGAGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACCGCCGCTACCGAATTGAGCTGCGCGGTCGACTTCGGCACGTAGCTTAGCGAAAACAGCGCGTAGCTCAGCGATAGCTTGTTCAAAATTAGTCAACGTTAATTTTTTTTGTAGCCCTTAACTAGCTGTACATTTTCCAGGTTAGATTGTTTAAAAATATTGATTTTTAAAAAAGTTATGAGCTAAAACCTGCCAAGGTTCCCAAAAATAGGTTTGAAAAATCGAAAATTCGAAATTCAAAAGTTCAAATTTGGCGCCAAACCAATGTACTTCAACACCGGAAA</canonical>
            <polymorphic>TTGGAAGCGGAGATAATTGAGGTCAAAGTTACTAATCATCTATTTTTCTTTCAAACTTCAACTGACACCGCTATATCCGATTGAAAAAGGGCAAAAAAAGGTTTAAACGAAAAAAAGAAAATTTATAATAAATGAAGATGATGATTGATCTTGACATATATATCTAGTACTATTAAGAAGAAGAAAATCGAATTACGGCGGTAAAAAAGGGCGGCAAATGAAAGGAATTGTTGACCTCATGCTAAAGAAGAGGGGACGAGTAAAAAAAGAAAATAAATAAGAAGAAAAAGAAGACCAGTTGATCTTTGATCAGTGAGACTTCAAAAAGAAGACAACATAAATAACTGGTAAGCTATAGAAGACACTAGAGTTGTTTACGATGACTGCGCAGCTCATTAGGCATCAGTAGGGAACCAACCCCGTAGCTCAGCGAAAACTCGTCACAATTATTTGAATTTTACATTGTTTTGTAGCCCTTAAAAAGTTCTATACACTGTACWTTATTTGAGCTTAAAAGGTAGAGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACCGCCGCTACCGAATTGAGCTGCGCGGTCGACTTCGGCACGTAGCTTAGCGAAAACAGCGCGTAGCTCAGCGATAGCTTGTTCAAAATTAGTCAACGTTAATTTTTTTTGTAGCCCTTAACTAGCTGTACATTTTCCAGGTTAGATTGTTTAAAAATATTGATTTTTAAAAAAGTTATGAGCTAAAACCTGCCAAGGTTCCCAAAAATAGGTTTGAAAAATCGAAAATTCGAAATTCAAAAGTTCAAATTTGGCGCCAAACCAATGTACTTCAACACCGGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGTACA</site>
                <isoschizomers>
                    <enzyme>AauI</enzyme>
                    <enzyme>Bsp1407I</enzyme>
                    <enzyme>BsrGI</enzyme>
                    <enzyme>SspBI</enzyme>
                </isoschizomers>
                <canonical_bands>495 348 157</canonical_bands>
                <polymorphic_bands>843 157</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>329 178 170 166 139 18</canonical_bands>
                <polymorphic_bands>507 170 166 139 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGAGTTGTTTACGATGACTGC</pcr_primer_p1>
		<pcr_primer_p2>ACAAGTTTTCGCTGAGCTAC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CTAGAGTTGTTTACGATGACTGCGCAGCTCATTAGGCATCAGTAGGGAACCAACCCCGTAGCTCAGCGAAAACTCGTCACAATTATTTGAATTTTACATTGTTTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTAGAGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGT</canonical_amplicon>
		<polymorphic_amplicon>CTAGAGTTGTTTACGATGACTGCGCAGCTCATTAGGCATCAGTAGGGAACCAACCCCGTAGCTCAGCGAAAACTCGTCACAATTATTTGAATTTTACATTGTTTTGTAGCCCTTAAAAAGTTCTATACACTGTACWTTATTTGAGCTTAAAAGGTAGAGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13518</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>361474</contig_pos>
        <strand>+</strand>
        <context>TTAAAAGGTA[A/G]ARCTYAAAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTA</left_flank>
        <right_flank>AGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCAAAGTTACTAATCATCTATTTTTCTTTCAAACTTCAACTGACACCGCTATATCCGATTGAAAAAGGGCAAAAAAAGGTTTAAACGAAAAAAAGAAAATTTATAATAAATGAAGATGATGATTGATCTTGACATATATATCTAGTACTATTAAGAAGAAGAAAATCGAATTACGGCGGTAAAAAAGGGCGGCAAATGAAAGGAATTGTTGACCTCATGCTAAAGAAGAGGGGACGAGTAAAAAAAGAAAATAAATAAGAAGAAAAAGAAGACCAGTTGATCTTTGATCAGTGAGACTTCAAAAAGAAGACAACATAAATAACTGGTAAGCTATAGAAGACACTAGAGTTGTTTACGATGACTGCGCAGCTCATTAGGCATCAGTAGGGAACCAACCCCGTAGCTCAGCGAAAACTCGTCACAATTATTTGAATTTTACATTGTTTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTAGAGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACCGCCGCTACCGAATTGAGCTGCGCGGTCGACTTCGGCACGTAGCTTAGCGAAAACAGCGCGTAGCTCAGCGATAGCTTGTTCAAAATTAGTCAACGTTAATTTTTTTTGTAGCCCTTAACTAGCTGTACATTTTCCAGGTTAGATTGTTTAAAAATATTGATTTTTAAAAAAGTTATGAGCTAAAACCTGCCAAGGTTCCCAAAAATAGGTTTGAAAAATCGAAAATTCGAAATTCAAAAGTTCAAATTTGGCGCCAAACCAATGTACTTCAACACCGGAAACTGTGACTCTGACCTTTTTCC</canonical>
            <polymorphic>GTCAAAGTTACTAATCATCTATTTTTCTTTCAAACTTCAACTGACACCGCTATATCCGATTGAAAAAGGGCAAAAAAAGGTTTAAACGAAAAAAAGAAAATTTATAATAAATGAAGATGATGATTGATCTTGACATATATATCTAGTACTATTAAGAAGAAGAAAATCGAATTACGGCGGTAAAAAAGGGCGGCAAATGAAAGGAATTGTTGACCTCATGCTAAAGAAGAGGGGACGAGTAAAAAAAGAAAATAAATAAGAAGAAAAAGAAGACCAGTTGATCTTTGATCAGTGAGACTTCAAAAAGAAGACAACATAAATAACTGGTAAGCTATAGAAGACACTAGAGTTGTTTACGATGACTGCGCAGCTCATTAGGCATCAGTAGGGAACCAACCCCGTAGCTCAGCGAAAACTCGTCACAATTATTTGAATTTTACATTGTTTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTARAGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACCGCCGCTACCGAATTGAGCTGCGCGGTCGACTTCGGCACGTAGCTTAGCGAAAACAGCGCGTAGCTCAGCGATAGCTTGTTCAAAATTAGTCAACGTTAATTTTTTTTGTAGCCCTTAACTAGCTGTACATTTTCCAGGTTAGATTGTTTAAAAATATTGATTTTTAAAAAAGTTATGAGCTAAAACCTGCCAAGGTTCCCAAAAATAGGTTTGAAAAATCGAAAATTCGAAATTCAAAAGTTCAAATTTGGCGCCAAACCAATGTACTTCAACACCGGAAACTGTGACTCTGACCTTTTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTAGCCCTTAAAAAGTTCTAT</pcr_primer_p1>
		<pcr_primer_p2>GGTGTAACTAGCTTCAAACTCAA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTAGAGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACC</canonical_amplicon>
		<polymorphic_amplicon>TTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTARAGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13519</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>361476</contig_pos>
        <strand>+</strand>
        <context>AAAAGGTARA[A/G]CTYAAAGCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTAGA</left_flank>
        <right_flank>CTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAGTTACTAATCATCTATTTTTCTTTCAAACTTCAACTGACACCGCTATATCCGATTGAAAAAGGGCAAAAAAAGGTTTAAACGAAAAAAAGAAAATTTATAATAAATGAAGATGATGATTGATCTTGACATATATATCTAGTACTATTAAGAAGAAGAAAATCGAATTACGGCGGTAAAAAAGGGCGGCAAATGAAAGGAATTGTTGACCTCATGCTAAAGAAGAGGGGACGAGTAAAAAAAGAAAATAAATAAGAAGAAAAAGAAGACCAGTTGATCTTTGATCAGTGAGACTTCAAAAAGAAGACAACATAAATAACTGGTAAGCTATAGAAGACACTAGAGTTGTTTACGATGACTGCGCAGCTCATTAGGCATCAGTAGGGAACCAACCCCGTAGCTCAGCGAAAACTCGTCACAATTATTTGAATTTTACATTGTTTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTAGAGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACCGCCGCTACCGAATTGAGCTGCGCGGTCGACTTCGGCACGTAGCTTAGCGAAAACAGCGCGTAGCTCAGCGATAGCTTGTTCAAAATTAGTCAACGTTAATTTTTTTTGTAGCCCTTAACTAGCTGTACATTTTCCAGGTTAGATTGTTTAAAAATATTGATTTTTAAAAAAGTTATGAGCTAAAACCTGCCAAGGTTCCCAAAAATAGGTTTGAAAAATCGAAAATTCGAAATTCAAAAGTTCAAATTTGGCGCCAAACCAATGTACTTCAACACCGGAAACTGTGACTCTGACCTTTTTCCAT</canonical>
            <polymorphic>CAAAGTTACTAATCATCTATTTTTCTTTCAAACTTCAACTGACACCGCTATATCCGATTGAAAAAGGGCAAAAAAAGGTTTAAACGAAAAAAAGAAAATTTATAATAAATGAAGATGATGATTGATCTTGACATATATATCTAGTACTATTAAGAAGAAGAAAATCGAATTACGGCGGTAAAAAAGGGCGGCAAATGAAAGGAATTGTTGACCTCATGCTAAAGAAGAGGGGACGAGTAAAAAAAGAAAATAAATAAGAAGAAAAAGAAGACCAGTTGATCTTTGATCAGTGAGACTTCAAAAAGAAGACAACATAAATAACTGGTAAGCTATAGAAGACACTAGAGTTGTTTACGATGACTGCGCAGCTCATTAGGCATCAGTAGGGAACCAACCCCGTAGCTCAGCGAAAACTCGTCACAATTATTTGAATTTTACATTGTTTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTAGARCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACCGCCGCTACCGAATTGAGCTGCGCGGTCGACTTCGGCACGTAGCTTAGCGAAAACAGCGCGTAGCTCAGCGATAGCTTGTTCAAAATTAGTCAACGTTAATTTTTTTTGTAGCCCTTAACTAGCTGTACATTTTCCAGGTTAGATTGTTTAAAAATATTGATTTTTAAAAAAGTTATGAGCTAAAACCTGCCAAGGTTCCCAAAAATAGGTTTGAAAAATCGAAAATTCGAAATTCAAAAGTTCAAATTTGGCGCCAAACCAATGTACTTCAACACCGGAAACTGTGACTCTGACCTTTTTCCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>329 125 84 83 57 48 39 35 34 28 25 25 21 21 21 14 11</canonical_bands>
                <polymorphic_bands>329 125 84 83 57 49 48 39 34 28 25 25 21 21 21 11</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>329 125 83 57 48 39 37 36 35 34 28 25 21 21 21 18 14 11 11 7</canonical_bands>
                <polymorphic_bands>329 125 83 57 49 48 39 37 36 34 28 25 21 21 21 18 11 11 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGTAGCCCTTAAAAAGTTCTAT</pcr_primer_p1>
		<pcr_primer_p2>GGTGTAACTAGCTTCAAACTCAA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTAGAGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACC</canonical_amplicon>
		<polymorphic_amplicon>TTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTAGARCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13520</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>361479</contig_pos>
        <strand>+</strand>
        <context>AGGTARARCT[C/T]AAAGCAAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTAGAGCT</left_flank>
        <right_flank>AAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTACTAATCATCTATTTTTCTTTCAAACTTCAACTGACACCGCTATATCCGATTGAAAAAGGGCAAAAAAAGGTTTAAACGAAAAAAAGAAAATTTATAATAAATGAAGATGATGATTGATCTTGACATATATATCTAGTACTATTAAGAAGAAGAAAATCGAATTACGGCGGTAAAAAAGGGCGGCAAATGAAAGGAATTGTTGACCTCATGCTAAAGAAGAGGGGACGAGTAAAAAAAGAAAATAAATAAGAAGAAAAAGAAGACCAGTTGATCTTTGATCAGTGAGACTTCAAAAAGAAGACAACATAAATAACTGGTAAGCTATAGAAGACACTAGAGTTGTTTACGATGACTGCGCAGCTCATTAGGCATCAGTAGGGAACCAACCCCGTAGCTCAGCGAAAACTCGTCACAATTATTTGAATTTTACATTGTTTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTAGAGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACCGCCGCTACCGAATTGAGCTGCGCGGTCGACTTCGGCACGTAGCTTAGCGAAAACAGCGCGTAGCTCAGCGATAGCTTGTTCAAAATTAGTCAACGTTAATTTTTTTTGTAGCCCTTAACTAGCTGTACATTTTCCAGGTTAGATTGTTTAAAAATATTGATTTTTAAAAAAGTTATGAGCTAAAACCTGCCAAGGTTCCCAAAAATAGGTTTGAAAAATCGAAAATTCGAAATTCAAAAGTTCAAATTTGGCGCCAAACCAATGTACTTCAACACCGGAAACTGTGACTCTGACCTTTTTCCATATA</canonical>
            <polymorphic>AGTTACTAATCATCTATTTTTCTTTCAAACTTCAACTGACACCGCTATATCCGATTGAAAAAGGGCAAAAAAAGGTTTAAACGAAAAAAAGAAAATTTATAATAAATGAAGATGATGATTGATCTTGACATATATATCTAGTACTATTAAGAAGAAGAAAATCGAATTACGGCGGTAAAAAAGGGCGGCAAATGAAAGGAATTGTTGACCTCATGCTAAAGAAGAGGGGACGAGTAAAAAAAGAAAATAAATAAGAAGAAAAAGAAGACCAGTTGATCTTTGATCAGTGAGACTTCAAAAAGAAGACAACATAAATAACTGGTAAGCTATAGAAGACACTAGAGTTGTTTACGATGACTGCGCAGCTCATTAGGCATCAGTAGGGAACCAACCCCGTAGCTCAGCGAAAACTCGTCACAATTATTTGAATTTTACATTGTTTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTAGAGCTYAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACCGCCGCTACCGAATTGAGCTGCGCGGTCGACTTCGGCACGTAGCTTAGCGAAAACAGCGCGTAGCTCAGCGATAGCTTGTTCAAAATTAGTCAACGTTAATTTTTTTTGTAGCCCTTAACTAGCTGTACATTTTCCAGGTTAGATTGTTTAAAAATATTGATTTTTAAAAAAGTTATGAGCTAAAACCTGCCAAGGTTCCCAAAAATAGGTTTGAAAAATCGAAAATTCGAAATTCAAAAGTTCAAATTTGGCGCCAAACCAATGTACTTCAACACCGGAAACTGTGACTCTGACCTTTTTCCATATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>304 160 143 130 77 70 34 33 19 16 14</canonical_bands>
                <polymorphic_bands>304 160 144 143 77 70 34 33 19 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGTAGCCCTTAAAAAGTTCTAT</pcr_primer_p1>
		<pcr_primer_p2>GGTGTAACTAGCTTCAAACTCAA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTAGAGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACC</canonical_amplicon>
		<polymorphic_amplicon>TTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTAGAGCTYAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13521</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>361627</contig_pos>
        <strand></strand>
        <context>TCTATATACT[G/A]RACTTTATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACT</left_flank>
        <right_flank>TACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACCGCCGC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAAGAAGAAAATCGAATTACGGCGGTAAAAAAGGGCGGCAAATGAAAGGAATTGTTGACCTCATGCTAAAGAAGAGGGGACGAGTAAAAAAAGAAAATAAATAAGAAGAAAAAGAAGACCAGTTGATCTTTGATCAGTGAGACTTCAAAAAGAAGACAACATAAATAACTGGTAAGCTATAGAAGACACTAGAGTTGTTTACGATGACTGCGCAGCTCATTAGGCATCAGTAGGGAACCAACCCCGTAGCTCAGCGAAAACTCGTCACAATTATTTGAATTTTACATTGTTTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTAGAGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACCGCCGCTACCGAATTGAGCTGCGCGGTCGACTTCGGCACGTAGCTTAGCGAAAACAGCGCGTAGCTCAGCGATAGCTTGTTCAAAATTAGTCAACGTTAATTTTTTTTGTAGCCCTTAACTAGCTGTACATTTTCCAGGTTAGATTGTTTAAAAATATTGATTTTTAAAAAAGTTATGAGCTAAAACCTGCCAAGGTTCCCAAAAATAGGTTTGAAAAATCGAAAATTCGAAATTCAAAAGTTCAAATTTGGCGCCAAACCAATGTACTTCAACACCGGAAACTGTGACTCTGACCTTTTTCCATATATATTGTTTGTATGTGTACACGAAAAACGAACAAACATTGAATGGGGATTTCAATGAAAAGCGAGAGATAAGGGGAAATGAAGAGATGCAGATAAAGAAGAGAAAGATGGCGAAGCGCCAGCGGGTAAAAGAGTAAACAACTTGTTGAA</canonical>
            <polymorphic>AAGAAGAAGAAAATCGAATTACGGCGGTAAAAAAGGGCGGCAAATGAAAGGAATTGTTGACCTCATGCTAAAGAAGAGGGGACGAGTAAAAAAAGAAAATAAATAAGAAGAAAAAGAAGACCAGTTGATCTTTGATCAGTGAGACTTCAAAAAGAAGACAACATAAATAACTGGTAAGCTATAGAAGACACTAGAGTTGTTTACGATGACTGCGCAGCTCATTAGGCATCAGTAGGGAACCAACCCCGTAGCTCAGCGAAAACTCGTCACAATTATTTGAATTTTACATTGTTTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTAGAGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTRTACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACCGCCGCTACCGAATTGAGCTGCGCGGTCGACTTCGGCACGTAGCTTAGCGAAAACAGCGCGTAGCTCAGCGATAGCTTGTTCAAAATTAGTCAACGTTAATTTTTTTTGTAGCCCTTAACTAGCTGTACATTTTCCAGGTTAGATTGTTTAAAAATATTGATTTTTAAAAAAGTTATGAGCTAAAACCTGCCAAGGTTCCCAAAAATAGGTTTGAAAAATCGAAAATTCGAAATTCAAAAGTTCAAATTTGGCGCCAAACCAATGTACTTCAACACCGGAAACTGTGACTCTGACCTTTTTCCATATATATTGTTTGTATGTGTACACGAAAAACGAACAAACATTGAATGGGGATTTCAATGAAAAGCGAGAGATAAGGGGAAATGAAGAGATGCAGATAAAGAAGAGAAAGATGGCGAAGCGCCAGCGGGTAAAAGAGTAAACAACTTGTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>323 178 170 139 132 58</canonical_bands>
                <polymorphic_bands>348 323 139 132 58</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>329 321 178 172</canonical_bands>
                <polymorphic_bands>507 321 172</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>321 178 170 139 134 58</canonical_bands>
                <polymorphic_bands>348 321 139 134 58</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGCTCAGCGAAAACTTGT</pcr_primer_p1>
		<pcr_primer_p2>TTAACGTTGACTAATTTTGAACA</pcr_primer_p2>
		<pcr_amplicon_size>218</pcr_amplicon_size>
		<canonical_amplicon>GTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACCGCCGCTACCGAATTGAGCTGCGCGGTCGACTTCGGCACGTAGCTTAGCGAAAACAGCGCGTAGCTCAGCGATAGCTTGTTCAAAATTAGTCAACGTTAA</canonical_amplicon>
		<polymorphic_amplicon>GTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTRTACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACCGCCGCTACCGAATTGAGCTGCGCGGTCGACTTCGGCACGTAGCTTAGCGAAAACAGCGCGTAGCTCAGCGATAGCTTGTTCAAAATTAGTCAACGTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13522</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>361643</contig_pos>
        <strand></strand>
        <context>TATTTGAGCT[C/T]YAATAATTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCT</left_flank>
        <right_flank>AAATAATTGAGTTTGAAGCTAGTTACACCGCCGCTACCGAATTGAGCTGC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTACGGCGGTAAAAAAGGGCGGCAAATGAAAGGAATTGTTGACCTCATGCTAAAGAAGAGGGGACGAGTAAAAAAAGAAAATAAATAAGAAGAAAAAGAAGACCAGTTGATCTTTGATCAGTGAGACTTCAAAAAGAAGACAACATAAATAACTGGTAAGCTATAGAAGACACTAGAGTTGTTTACGATGACTGCGCAGCTCATTAGGCATCAGTAGGGAACCAACCCCGTAGCTCAGCGAAAACTCGTCACAATTATTTGAATTTTACATTGTTTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTAGAGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACCGCCGCTACCGAATTGAGCTGCGCGGTCGACTTCGGCACGTAGCTTAGCGAAAACAGCGCGTAGCTCAGCGATAGCTTGTTCAAAATTAGTCAACGTTAATTTTTTTTGTAGCCCTTAACTAGCTGTACATTTTCCAGGTTAGATTGTTTAAAAATATTGATTTTTAAAAAAGTTATGAGCTAAAACCTGCCAAGGTTCCCAAAAATAGGTTTGAAAAATCGAAAATTCGAAATTCAAAAGTTCAAATTTGGCGCCAAACCAATGTACTTCAACACCGGAAACTGTGACTCTGACCTTTTTCCATATATATTGTTTGTATGTGTACACGAAAAACGAACAAACATTGAATGGGGATTTCAATGAAAAGCGAGAGATAAGGGGAAATGAAGAGATGCAGATAAAGAAGAGAAAGATGGCGAAGCGCCAGCGGGTAAAAGAGTAAACAACTTGTTGAAGAAACGAAATTTAGAA</canonical>
            <polymorphic>AATTACGGCGGTAAAAAAGGGCGGCAAATGAAAGGAATTGTTGACCTCATGCTAAAGAAGAGGGGACGAGTAAAAAAAGAAAATAAATAAGAAGAAAAAGAAGACCAGTTGATCTTTGATCAGTGAGACTTCAAAAAGAAGACAACATAAATAACTGGTAAGCTATAGAAGACACTAGAGTTGTTTACGATGACTGCGCAGCTCATTAGGCATCAGTAGGGAACCAACCCCGTAGCTCAGCGAAAACTCGTCACAATTATTTGAATTTTACATTGTTTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTAGAGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTYAAATAATTGAGTTTGAAGCTAGTTACACCGCCGCTACCGAATTGAGCTGCGCGGTCGACTTCGGCACGTAGCTTAGCGAAAACAGCGCGTAGCTCAGCGATAGCTTGTTCAAAATTAGTCAACGTTAATTTTTTTTGTAGCCCTTAACTAGCTGTACATTTTCCAGGTTAGATTGTTTAAAAATATTGATTTTTAAAAAAGTTATGAGCTAAAACCTGCCAAGGTTCCCAAAAATAGGTTTGAAAAATCGAAAATTCGAAATTCAAAAGTTCAAATTTGGCGCCAAACCAATGTACTTCAACACCGGAAACTGTGACTCTGACCTTTTTCCATATATATTGTTTGTATGTGTACACGAAAAACGAACAAACATTGAATGGGGATTTCAATGAAAAGCGAGAGATAAGGGGAAATGAAGAGATGCAGATAAAGAAGAGAAAGATGGCGAAGCGCCAGCGGGTAAAAGAGTAAACAACTTGTTGAAGAAACGAAATTTAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGCTCAGCGAAAACTTGT</pcr_primer_p1>
		<pcr_primer_p2>TTAACGTTGACTAATTTTGAACA</pcr_primer_p2>
		<pcr_amplicon_size>218</pcr_amplicon_size>
		<canonical_amplicon>GTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACCGCCGCTACCGAATTGAGCTGCGCGGTCGACTTCGGCACGTAGCTTAGCGAAAACAGCGCGTAGCTCAGCGATAGCTTGTTCAAAATTAGTCAACGTTAA</canonical_amplicon>
		<polymorphic_amplicon>GTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTYAAATAATTGAGTTTGAAGCTAGTTACACCGCCGCTACCGAATTGAGCTGCGCGGTCGACTTCGGCACGTAGCTTAGCGAAAACAGCGCGTAGCTCAGCGATAGCTTGTTCAAAATTAGTCAACGTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13523</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>362969</contig_pos>
        <strand>+</strand>
        <context>TTTTGGGAAA[A/G]CAAAAATATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAGAGGCATCAACAACAGGAAGACACCAGAGCTCTTTTTTTGGGAAA</left_flank>
        <right_flank>CAAAAATATCAGGTTTCTAGAAGAATCTAGAATTCAAATTTCCCGCCAAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAAAATGGTTTTCAGCGCAGAATGTGTTGAATTCTTCAAATTCTTGTTTTTTATTGAATTTGCAATATTTTGAGCTAAAAACCACTTTTCTAGCTATTCTAGAATTCAAGATATAACTATTTGAAGGCGAGGAGACGCAGGAAGAGAGATAGTCTAACTGTCCGCGTCTCTATCTCTTCACTTATCAATTTTTTTTAAAGTTGTTAATTACAAAAATGTAGAAAATTATATTTCACATATTTTATCAGTTGCCAACATTTTGATATCTTAATTGAGAGCAAAGATAATTGGGGTCAAAGTCATGACTTGTAACAATTACAAAAAAAAATTTTATTTTTGGTTTTTGAGCTCTAAAATAGCAACAAAAAAAAAACAAATATTTTTTGGGGAATACCCCAAAAAAACATTTGGGGTTTTTTGGTTCTTCCAGCCGATTGAACAAATATAAAAAAGAGGCATCAACAACAGGAAGACACCAGAGCTCTTTTTTTGGGAAAACAAAAATATCAGGTTTCTAGAAGAATCTAGAATTCAAATTTCCCGCCAAGCCTCTATATCAAAAAGTTGTCCACTAATGAAATATAGGAAATTTAATTTCCTACATGTTTGTAGTTGACACTTTTTTTCTGAAAATCGTTATCTGATGAGATAGAGACGCAGACATTTAGAGAGTCTCGTTGTCTGCACCTACTGAACTTCAAATAGCNNNNNNNNNNNNGCTCAAATCGGTTGCGGCGGCGTAACTTGCTTTAAGCTCTACCTTTTAAGCTCAAATAATGTACAGTGTATAGAACTTTTTAAGGGCTACAAAACAATGTAAAATTCAAATAATTGTGACGAGTTTTCGCTGAGCTACGGGGTTGGTTCCCTACTGATGCCTAATGAGCTGCGCAGTCATCGTAAACAACTCTAGTGTCTTCTATAGCTTACCAGTTATTTATGTTGTCTTCTTTTTGAAGTCTCTCTATCTCTTCATGTGTTGATTTTCAGAAAAAAGT</canonical>
            <polymorphic>AGAAAAATGGTTTTCAGCGCAGAATGTGTTGAATTCTTCAAATTCTTGTTTTTTATTGAATTTGCAATATTTTGAGCTAAAAACCACTTTTCTAGCTATTCTAGAATTCAAGATATAACTATTTGAAGGCGAGGAGACGCAGGAAGAGAGATAGTCTAACTGTCCGCGTCTCTATCTCTTCACTTATCAATTTTTTTTAAAGTTGTTAATTACAAAAATGTAGAAAATTATATTTCACATATTTTATCAGTTGCCAACATTTTGATATCTTAATTGAGAGCAAAGATAATTGGGGTCAAAGTCATGACTTGTAACAATTACAAAAAAAAATTTTATTTTTGGTTTTTGAGCTCTAAAATAGCAACAAAAAAAAAACAAATATTTTTTGGGGAATACCCCAAAAAAACATTTGGGGTTTTTTGGTTCTTCCAGCCGATTGAACAAATATAAAAAAGAGGCATCAACAACAGGAAGACACCAGAGCTCTTTTTTTGGGAAARCAAAAATATCAGGTTTCTAGAAGAATCTAGAATTCAAATTTCCCGCCAAGCCTCTATATCAAAAAGTTGTCCACTAATGAAATATAGGAAATTTAATTTCCTACATGTTTGTAGTTGACACTTTTTTTCTGAAAATCGTTATCTGATGAGATAGAGACGCAGACATTTAGAGAGTCTCGTTGTCTGCACCTACTGAACTTCAAATAGCNNNNNNNNNNNNGCTCAAATCGGTTGCGGCGGCGTAACTTGCTTTAAGCTCTACCTTTTAAGCTCAAATAATGTACAGTGTATAGAACTTTTTAAGGGCTACAAAACAATGTAAAATTCAAATAATTGTGACGAGTTTTCGCTGAGCTACGGGGTTGGTTCCCTACTGATGCCTAATGAGCTGCGCAGTCATCGTAAACAACTCTAGTGTCTTCTATAGCTTACCAGTTATTTATGTTGTCTTCTTTTTGAAGTCTCTCTATCTCTTCATGTGTTGATTTTCAGAAAAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAGGCATCAACAACAG</pcr_primer_p1>
		<pcr_primer_p2>AAAGGTAGAGCTTAAAGCAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>316</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAGGCATCAACAACAGGAAGACACCAGAGCTCTTTTTTTGGGAAAACAAAAATATCAGGTTTCTAGAAGAATCTAGAATTCAAATTTCCCGCCAAGCCTCTATATCAAAAAGTTGTCCACTAATGAAATATAGGAAATTTAATTTCCTACATGTTTGTAGTTGACACTTTTTTTCTGAAAATCGTTATCTGATGAGATAGAGACGCAGACATTTAGAGAGTCTCGTTGTCTGCACCTACTGAACTTCAAATAGCNNNNNNNNNNNNGCTCAAATCGGTTGCGGCGGCGTAACTTGCTTTAAGCTCTACCTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAGGCATCAACAACAGGAAGACACCAGAGCTCTTTTTTTGGGAAARCAAAAATATCAGGTTTCTAGAAGAATCTAGAATTCAAATTTCCCGCCAAGCCTCTATATCAAAAAGTTGTCCACTAATGAAATATAGGAAATTTAATTTCCTACATGTTTGTAGTTGACACTTTTTTTCTGAAAATCGTTATCTGATGAGATAGAGACGCAGACATTTAGAGAGTCTCGTTGTCTGCACCTACTGAACTTCAAATAGCNNNNNNNNNNNNGCTCAAATCGGTTGCGGCGGCGTAACTTGCTTTAAGCTCTACCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13524</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>362863</contig_pos>
        <strand></strand>
        <context>TTTTGGGGAA[T/A]ACCCCAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTTGAGCTCTAAAATAGCAACAAAAAAAAAACAAATATTTTTTGGGGAA</left_flank>
        <right_flank>ACCCCAAAAAAACATTTGGGGTTTTTTGGTTCTTCCAGCCGATTGAACAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCTGAAAATTGACACCTAGAGAGATAGAGACGCAGACAGTTAGAGTGTCTCACTGTCTGCGCTTCCTATAGCTATATCTATATCTCGGCTCCTAGGAAGGCTAGAAAAATGGTTTTCAGCGCAGAATGTGTTGAATTCTTCAAATTCTTGTTTTTTATTGAATTTGCAATATTTTGAGCTAAAAACCACTTTTCTAGCTATTCTAGAATTCAAGATATAACTATTTGAAGGCGAGGAGACGCAGGAAGAGAGATAGTCTAACTGTCCGCGTCTCTATCTCTTCACTTATCAATTTTTTTTAAAGTTGTTAATTACAAAAATGTAGAAAATTATATTTCACATATTTTATCAGTTGCCAACATTTTGATATCTTAATTGAGAGCAAAGATAATTGGGGTCAAAGTCATGACTTGTAACAATTACAAAAAAAAATTTTATTTTTGGTTTTTGAGCTCTAAAATAGCAACAAAAAAAAAACAAATATTTTTTGGGGAATACCCCAAAAAAACATTTGGGGTTTTTTGGTTCTTCCAGCCGATTGAACAAATATAAAAAAGAGGCATCAACAACAGGAAGACACCAGAGCTCTTTTTTTGGGAAAACAAAAATATCAGGTTTCTAGAAGAATCTAGAATTCAAATTTCCCGCCAAGCCTCTATATCAAAAAGTTGTCCACTAATGAAATATAGGAAATTTAATTTCCTACATGTTTGTAGTTGACACTTTTTTTCTGAAAATCGTTATCTGATGAGATAGAGACGCAGACATTTAGAGAGTCTCGTTGTCTGCACCTACTGAACTTCAAATAGCNNNNNNNNNNNNGCTCAAATCGGTTGCGGCGGCGTAACTTGCTTTAAGCTCTACCTTTTAAGCTCAAATAATGTACAGTGTATAGAACTTTTTAAGGGCTACAAAACAATGTAAAATTCAAATAATTGTGACGAGTTTTCGCTGAGCTACGGGGTTGGTTCCCTACTGATGCCTAATGAGCTGCGC</canonical>
            <polymorphic>TTTTTCTGAAAATTGACACCTAGAGAGATAGAGACGCAGACAGTTAGAGTGTCTCACTGTCTGCGCTTCCTATAGCTATATCTATATCTCGGCTCCTAGGAAGGCTAGAAAAATGGTTTTCAGCGCAGAATGTGTTGAATTCTTCAAATTCTTGTTTTTTATTGAATTTGCAATATTTTGAGCTAAAAACCACTTTTCTAGCTATTCTAGAATTCAAGATATAACTATTTGAAGGCGAGGAGACGCAGGAAGAGAGATAGTCTAACTGTCCGCGTCTCTATCTCTTCACTTATCAATTTTTTTTAAAGTTGTTAATTACAAAAATGTAGAAAATTATATTTCACATATTTTATCAGTTGCCAACATTTTGATATCTTAATTGAGAGCAAAGATAATTGGGGTCAAAGTCATGACTTGTAACAATTACAAAAAAAAATTTTATTTTTGGTTTTTGAGCTCTAAAATAGCAACAAAAAAAAAACAAATATTTTTTGGGGAAWACCCCAAAAAAACATTTGGGGTTTTTTGGTTCTTCCAGCCGATTGAACAAATATAAAAAAGAGGCATCAACAACAGGAAGACACCAGAGCTCTTTTTTTGGGAAAACAAAAATATCAGGTTTCTAGAAGAATCTAGAATTCAAATTTCCCGCCAAGCCTCTATATCAAAAAGTTGTCCACTAATGAAATATAGGAAATTTAATTTCCTACATGTTTGTAGTTGACACTTTTTTTCTGAAAATCGTTATCTGATGAGATAGAGACGCAGACATTTAGAGAGTCTCGTTGTCTGCACCTACTGAACTTCAAATAGCNNNNNNNNNNNNGCTCAAATCGGTTGCGGCGGCGTAACTTGCTTTAAGCTCTACCTTTTAAGCTCAAATAATGTACAGTGTATAGAACTTTTTAAGGGCTACAAAACAATGTAAAATTCAAATAATTGTGACGAGTTTTCGCTGAGCTACGGGGTTGGTTCCCTACTGATGCCTAATGAGCTGCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATTCTTCAAATTCTTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGTTGTTGATGCCTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>440</pcr_amplicon_size>
		<canonical_amplicon>TGAATTCTTCAAATTCTTGTTTTTTATTGAATTTGCAATATTTTGAGCTAAAAACCACTTTTCTAGCTATTCTAGAATTCAAGATATAACTATTTGAAGGCGAGGAGACGCAGGAAGAGAGATAGTCTAACTGTCCGCGTCTCTATCTCTTCACTTATCAATTTTTTTTAAAGTTGTTAATTACAAAAATGTAGAAAATTATATTTCACATATTTTATCAGTTGCCAACATTTTGATATCTTAATTGAGAGCAAAGATAATTGGGGTCAAAGTCATGACTTGTAACAATTACAAAAAAAAATTTTATTTTTGGTTTTTGAGCTCTAAAATAGCAACAAAAAAAAAACAAATATTTTTTGGGGAATACCCCAAAAAAACATTTGGGGTTTTTTGGTTCTTCCAGCCGATTGAACAAATATAAAAAAGAGGCATCAACAACA</canonical_amplicon>
		<polymorphic_amplicon>TGAATTCTTCAAATTCTTGTTTTTTATTGAATTTGCAATATTTTGAGCTAAAAACCACTTTTCTAGCTATTCTAGAATTCAAGATATAACTATTTGAAGGCGAGGAGACGCAGGAAGAGAGATAGTCTAACTGTCCGCGTCTCTATCTCTTCACTTATCAATTTTTTTTAAAGTTGTTAATTACAAAAATGTAGAAAATTATATTTCACATATTTTATCAGTTGCCAACATTTTGATATCTTAATTGAGAGCAAAGATAATTGGGGTCAAAGTCATGACTTGTAACAATTACAAAAAAAAATTTTATTTTTGGTTTTTGAGCTCTAAAATAGCAACAAAAAAAAAACAAATATTTTTTGGGGAAWACCCCAAAAAAACATTTGGGGTTTTTTGGTTCTTCCAGCCGATTGAACAAATATAAAAAAGAGGCATCAACAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13525</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>390610</contig_pos>
        <strand>+</strand>
        <context>CACATCCCTT[A/G]AAATCAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTCAAGAACTTCCTTCTAGAGGTTCCCAAAGGCCGATCCACATCCCTT</left_flank>
        <right_flank>AAATCAAATTTACAGGATAATTCAGGCAAGATTAGTTCAAAAGAAGAATA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTACAGGGACCGCTGGTACCGGTGGATGGGGAATCCAGAATCTTTAAAAAAAAGTTCTCAATGTTCTCAACTCCTAGTAGATTAGCTTGTTGATAAATTTTAAATTTTTAGAAGAATCCATCTTCAAAAGTTCGGAATTCAGGGAACCCTCGGATTTTCAGAAATTCCAAGGAAACAAGAAACACTGTAAATTACAAACCCATTTATGGTGGAAGTGAGGAGAGAACCAAGAGCCAGGAAGACAAAAACGGACGTTGGGCGGATCATTGGAAGATTCGAGAACTCAACGAACTCACAATTTCTTGACTTCATATCCCAGATACCCTAGACCACTTCCCCAGATGTCATTGTCAGATCAATTAACTTTTTATTTGAGAAAAGCTTCTTTTTTCGCGTAATTTCTGTGATGTTGATGAAAATGACCTAGAGCTTCAAATTTTAGCTGAAAACATTCAAGAACTTCCTTCTAGAGGTTCCCAAAGGCCGATCCACATCCCTTAAAATCAAATTTACAGGATAATTCAGGCAAGATTAGTTCAAAAGAAGAATATAAACACAAAATTTAACATAATCAAAATCTTTATTCATTATGTCAAGTATGAAGTATGGATTCTATCAATCATGTGTGGCCGTGTAGTCCCATTGGACAGGATCAGAGAGCAGCCAGAACGACAAATGAGGCACCTGGAAATTTAAAATTTAGGGTTACGGTACTAGAATTTCCTGGAAACGTCTCGCCAAAAATAAGACTAAAATATGATGAAAGTTTTCGAGATCAATTTACAAGAACCGTACAAATTCCATATCTCATAAAAGTGGCTGAACCTTCGACGGGGGTTGTTCGGAAGTCTCCGCGGGAAGGCCCTGTTGTTGTTTCGCCGCCAAATGTACTTTCAGTTTTCCATTGAAGGGTCTAACATGGGTTTTTCGGGTTTTTCCTATTTTGGTTCTACTTTTGGTTCTGGTTCTGGCTCTGGTTCATAATCTTCTCCAAAAGCCA</canonical>
            <polymorphic>CTACAGGGACCGCTGGTACCGGTGGATGGGGAATCCAGAATCTTTAAAAAAAAGTTCTCAATGTTCTCAACTCCTAGTAGATTAGCTTGTTGATAAATTTTAAATTTTTAGAAGAATCCATCTTCAAAAGTTCGGAATTCAGGGAACCCTCGGATTTTCAGAAATTCCAAGGAAACAAGAAACACTGTAAATTACAAACCCATTTATGGTGGAAGTGAGGAGAGAACCAAGAGCCAGGAAGACAAAAACGGACGTTGGGCGGATCATTGGAAGATTCGAGAACTCAACGAACTCACAATTTCTTGACTTCATATCCCAGATACCCTAGACCACTTCCCCAGATGTCATTGTCAGATCAATTAACTTTTTATTTGAGAAAAGCTTCTTTTTTCGCGTAATTTCTGTGATGTTGATGAAAATGACCTAGAGCTTCAAATTTTAGCTGAAAACATTCAAGAACTTCCTTCTAGAGGTTCCCAAAGGCCGATCCACATCCCTTRAAATCAAATTTACAGGATAATTCAGGCAAGATTAGTTCAAAAGAAGAATATAAACACAAAATTTAACATAATCAAAATCTTTATTCATTATGTCAAGTATGAAGTATGGATTCTATCAATCATGTGTGGCCGTGTAGTCCCATTGGACAGGATCAGAGAGCAGCCAGAACGACAAATGAGGCACCTGGAAATTTAAAATTTAGGGTTACGGTACTAGAATTTCCTGGAAACGTCTCGCCAAAAATAAGACTAAAATATGATGAAAGTTTTCGAGATCAATTTACAAGAACCGTACAAATTCCATATCTCATAAAAGTGGCTGAACCTTCGACGGGGGTTGTTCGGAAGTCTCCGCGGGAAGGCCCTGTTGTTGTTTCGCCGCCAAATGTACTTTCAGTTTTCCATTGAAGGGTCTAACATGGGTTTTTCGGGTTTTTCCTATTTTGGTTCTACTTTTGGTTCTGGTTCTGGCTCTGGTTCATAATCTTCTCCAAAAGCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>307 260 138 130 65 56 44</canonical_bands>
                <polymorphic_bands>307 260 203 130 56 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATGACCTAGAGCTTCAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTCTCTGATCCTGTCCAATG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAATGACCTAGAGCTTCAAATTTTAGCTGAAAACATTCAAGAACTTCCTTCTAGAGGTTCCCAAAGGCCGATCCACATCCCTTAAAATCAAATTTACAGGATAATTCAGGCAAGATTAGTTCAAAAGAAGAATATAAACACAAAATTTAACATAATCAAAATCTTTATTCATTATGTCAAGTATGAAGTATGGATTCTATCAATCATGTGTGGCCGTGTAGTCCCATTGGACAGGATCAGAGAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATGACCTAGAGCTTCAAATTTTAGCTGAAAACATTCAAGAACTTCCTTCTAGAGGTTCCCAAAGGCCGATCCACATCCCTTRAAATCAAATTTACAGGATAATTCAGGCAAGATTAGTTCAAAAGAAGAATATAAACACAAAATTTAACATAATCAAAATCTTTATTCATTATGTCAAGTATGAAGTATGGATTCTATCAATCATGTGTGGCCGTGTAGTCCCATTGGACAGGATCAGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13526</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>390735</contig_pos>
        <strand>+</strand>
        <context>ATCAATCATG[A/T]GTGGCCGTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATCTTTATTCATTATGTCAAGTATGAAGTATGGATTCTATCAATCATG</left_flank>
        <right_flank>GTGGCCGTGTAGTCCCATTGGACAGGATCAGAGAGCAGCCAGAACGACAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAGTTCGGAATTCAGGGAACCCTCGGATTTTCAGAAATTCCAAGGAAACAAGAAACACTGTAAATTACAAACCCATTTATGGTGGAAGTGAGGAGAGAACCAAGAGCCAGGAAGACAAAAACGGACGTTGGGCGGATCATTGGAAGATTCGAGAACTCAACGAACTCACAATTTCTTGACTTCATATCCCAGATACCCTAGACCACTTCCCCAGATGTCATTGTCAGATCAATTAACTTTTTATTTGAGAAAAGCTTCTTTTTTCGCGTAATTTCTGTGATGTTGATGAAAATGACCTAGAGCTTCAAATTTTAGCTGAAAACATTCAAGAACTTCCTTCTAGAGGTTCCCAAAGGCCGATCCACATCCCTTAAAATCAAATTTACAGGATAATTCAGGCAAGATTAGTTCAAAAGAAGAATATAAACACAAAATTTAACATAATCAAAATCTTTATTCATTATGTCAAGTATGAAGTATGGATTCTATCAATCATGTGTGGCCGTGTAGTCCCATTGGACAGGATCAGAGAGCAGCCAGAACGACAAATGAGGCACCTGGAAATTTAAAATTTAGGGTTACGGTACTAGAATTTCCTGGAAACGTCTCGCCAAAAATAAGACTAAAATATGATGAAAGTTTTCGAGATCAATTTACAAGAACCGTACAAATTCCATATCTCATAAAAGTGGCTGAACCTTCGACGGGGGTTGTTCGGAAGTCTCCGCGGGAAGGCCCTGTTGTTGTTTCGCCGCCAAATGTACTTTCAGTTTTCCATTGAAGGGTCTAACATGGGTTTTTCGGGTTTTTCCTATTTTGGTTCTACTTTTGGTTCTGGTTCTGGCTCTGGTTCATAATCTTCTCCAAAAGCCACAGCGATCAATGCAAGAGCCAAAAAGAGCCAATCGTTTTGTGGAACATTTCTAGTCTGACTAGGGAAGGCCCCAACTCGGGTGTGGCGATACGGGTGGTGACCTATATCATCTGAAAGCTGACAT</canonical>
            <polymorphic>AAAAGTTCGGAATTCAGGGAACCCTCGGATTTTCAGAAATTCCAAGGAAACAAGAAACACTGTAAATTACAAACCCATTTATGGTGGAAGTGAGGAGAGAACCAAGAGCCAGGAAGACAAAAACGGACGTTGGGCGGATCATTGGAAGATTCGAGAACTCAACGAACTCACAATTTCTTGACTTCATATCCCAGATACCCTAGACCACTTCCCCAGATGTCATTGTCAGATCAATTAACTTTTTATTTGAGAAAAGCTTCTTTTTTCGCGTAATTTCTGTGATGTTGATGAAAATGACCTAGAGCTTCAAATTTTAGCTGAAAACATTCAAGAACTTCCTTCTAGAGGTTCCCAAAGGCCGATCCACATCCCTTAAAATCAAATTTACAGGATAATTCAGGCAAGATTAGTTCAAAAGAAGAATATAAACACAAAATTTAACATAATCAAAATCTTTATTCATTATGTCAAGTATGAAGTATGGATTCTATCAATCATGWGTGGCCGTGTAGTCCCATTGGACAGGATCAGAGAGCAGCCAGAACGACAAATGAGGCACCTGGAAATTTAAAATTTAGGGTTACGGTACTAGAATTTCCTGGAAACGTCTCGCCAAAAATAAGACTAAAATATGATGAAAGTTTTCGAGATCAATTTACAAGAACCGTACAAATTCCATATCTCATAAAAGTGGCTGAACCTTCGACGGGGGTTGTTCGGAAGTCTCCGCGGGAAGGCCCTGTTGTTGTTTCGCCGCCAAATGTACTTTCAGTTTTCCATTGAAGGGTCTAACATGGGTTTTTCGGGTTTTTCCTATTTTGGTTCTACTTTTGGTTCTGGTTCTGGCTCTGGTTCATAATCTTCTCCAAAAGCCACAGCGATCAATGCAAGAGCCAAAAAGAGCCAATCGTTTTGTGGAACATTTCTAGTCTGACTAGGGAAGGCCCCAACTCGGGTGTGGCGATACGGGTGGTGACCTATATCATCTGAAAGCTGACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>182 135 85 78 74 70 65 59 49 42 41 37 27 25 12 6 6 3 2 2</canonical_bands>
                <polymorphic_bands>182 135 85 78 74 72 65 59 49 42 41 37 27 25 12 6 6 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAAAGAAGAATATAAACACAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGTAAATTGATCTCGAAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAAAAGAAGAATATAAACACAAAATTTAACATAATCAAAATCTTTATTCATTATGTCAAGTATGAAGTATGGATTCTATCAATCATGTGTGGCCGTGTAGTCCCATTGGACAGGATCAGAGAGCAGCCAGAACGACAAATGAGGCACCTGGAAATTTAAAATTTAGGGTTACGGTACTAGAATTTCCTGGAAACGTCTCGCCAAAAATAAGACTAAAATATGATGAAAGTTTTCGAGATCAATTTACAA</canonical_amplicon>
		<polymorphic_amplicon>TCAAAAGAAGAATATAAACACAAAATTTAACATAATCAAAATCTTTATTCATTATGTCAAGTATGAAGTATGGATTCTATCAATCATGWGTGGCCGTGTAGTCCCATTGGACAGGATCAGAGAGCAGCCAGAACGACAAATGAGGCACCTGGAAATTTAAAATTTAGGGTTACGGTACTAGAATTTCCTGGAAACGTCTCGCCAAAAATAAGACTAAAATATGATGAAAGTTTTCGAGATCAATTTACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13527</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>390817</contig_pos>
        <strand>+</strand>
        <context>AATTTAGGGT[G/T]ACGGTACTRG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGAGCAGCCAGAACGACAAATGAGGCACCTGGAAATTTAAAATTTAGGGT</left_flank>
        <right_flank>ACGGTACTAGAATTTCCTGGAAACGTCTCGCCAAAAATAAGACTAAAATA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGGAAGTGAGGAGAGAACCAAGAGCCAGGAAGACAAAAACGGACGTTGGGCGGATCATTGGAAGATTCGAGAACTCAACGAACTCACAATTTCTTGACTTCATATCCCAGATACCCTAGACCACTTCCCCAGATGTCATTGTCAGATCAATTAACTTTTTATTTGAGAAAAGCTTCTTTTTTCGCGTAATTTCTGTGATGTTGATGAAAATGACCTAGAGCTTCAAATTTTAGCTGAAAACATTCAAGAACTTCCTTCTAGAGGTTCCCAAAGGCCGATCCACATCCCTTAAAATCAAATTTACAGGATAATTCAGGCAAGATTAGTTCAAAAGAAGAATATAAACACAAAATTTAACATAATCAAAATCTTTATTCATTATGTCAAGTATGAAGTATGGATTCTATCAATCATGTGTGGCCGTGTAGTCCCATTGGACAGGATCAGAGAGCAGCCAGAACGACAAATGAGGCACCTGGAAATTTAAAATTTAGGGTTACGGTACTAGAATTTCCTGGAAACGTCTCGCCAAAAATAAGACTAAAATATGATGAAAGTTTTCGAGATCAATTTACAAGAACCGTACAAATTCCATATCTCATAAAAGTGGCTGAACCTTCGACGGGGGTTGTTCGGAAGTCTCCGCGGGAAGGCCCTGTTGTTGTTTCGCCGCCAAATGTACTTTCAGTTTTCCATTGAAGGGTCTAACATGGGTTTTTCGGGTTTTTCCTATTTTGGTTCTACTTTTGGTTCTGGTTCTGGCTCTGGTTCATAATCTTCTCCAAAAGCCACAGCGATCAATGCAAGAGCCAAAAAGAGCCAATCGTTTTGTGGAACATTTCTAGTCTGACTAGGGAAGGCCCCAACTCGGGTGTGGCGATACGGGTGGTGACCTATATCATCTGAAAGCTGACATGTTCTTGATTCCAAATCTTTTTTAAAAAATGTCCTCTCCCCTCTCCTCTCCCTGTTTTCCTCCCCTCTTCTACGCCCTCCCC</canonical>
            <polymorphic>GGTGGAAGTGAGGAGAGAACCAAGAGCCAGGAAGACAAAAACGGACGTTGGGCGGATCATTGGAAGATTCGAGAACTCAACGAACTCACAATTTCTTGACTTCATATCCCAGATACCCTAGACCACTTCCCCAGATGTCATTGTCAGATCAATTAACTTTTTATTTGAGAAAAGCTTCTTTTTTCGCGTAATTTCTGTGATGTTGATGAAAATGACCTAGAGCTTCAAATTTTAGCTGAAAACATTCAAGAACTTCCTTCTAGAGGTTCCCAAAGGCCGATCCACATCCCTTAAAATCAAATTTACAGGATAATTCAGGCAAGATTAGTTCAAAAGAAGAATATAAACACAAAATTTAACATAATCAAAATCTTTATTCATTATGTCAAGTATGAAGTATGGATTCTATCAATCATGTGTGGCCGTGTAGTCCCATTGGACAGGATCAGAGAGCAGCCAGAACGACAAATGAGGCACCTGGAAATTTAAAATTTAGGGTKACGGTACTAGAATTTCCTGGAAACGTCTCGCCAAAAATAAGACTAAAATATGATGAAAGTTTTCGAGATCAATTTACAAGAACCGTACAAATTCCATATCTCATAAAAGTGGCTGAACCTTCGACGGGGGTTGTTCGGAAGTCTCCGCGGGAAGGCCCTGTTGTTGTTTCGCCGCCAAATGTACTTTCAGTTTTCCATTGAAGGGTCTAACATGGGTTTTTCGGGTTTTTCCTATTTTGGTTCTACTTTTGGTTCTGGTTCTGGCTCTGGTTCATAATCTTCTCCAAAAGCCACAGCGATCAATGCAAGAGCCAAAAAGAGCCAATCGTTTTGTGGAACATTTCTAGTCTGACTAGGGAAGGCCCCAACTCGGGTGTGGCGATACGGGTGGTGACCTATATCATCTGAAAGCTGACATGTTCTTGATTCCAAATCTTTTTTAAAAAATGTCCTCTCCCCTCTCCTCTCCCTGTTTTCCTCCCCTCTTCTACGCCCTCCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAAGAAGAATATAAACACAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGTAAATTGATCTCGAAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAAAAGAAGAATATAAACACAAAATTTAACATAATCAAAATCTTTATTCATTATGTCAAGTATGAAGTATGGATTCTATCAATCATGTGTGGCCGTGTAGTCCCATTGGACAGGATCAGAGAGCAGCCAGAACGACAAATGAGGCACCTGGAAATTTAAAATTTAGGGTTACGGTACTAGAATTTCCTGGAAACGTCTCGCCAAAAATAAGACTAAAATATGATGAAAGTTTTCGAGATCAATTTACAA</canonical_amplicon>
		<polymorphic_amplicon>TCAAAAGAAGAATATAAACACAAAATTTAACATAATCAAAATCTTTATTCATTATGTCAAGTATGAAGTATGGATTCTATCAATCATGTGTGGCCGTGTAGTCCCATTGGACAGGATCAGAGAGCAGCCAGAACGACAAATGAGGCACCTGGAAATTTAAAATTTAGGGTKACGGTACTAGAATTTCCTGGAAACGTCTCGCCAAAAATAAGACTAAAATATGATGAAAGTTTTCGAGATCAATTTACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13528</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>390826</contig_pos>
        <strand>+</strand>
        <context>TKACGGTACT[A/G]GAATTTCCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAACGACAAATGAGGCACCTGGAAATTTAAAATTTAGGGTTACGGTACT</left_flank>
        <right_flank>GAATTTCCTGGAAACGTCTCGCCAAAAATAAGACTAAAATATGATGAAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGGAGAGAACCAAGAGCCAGGAAGACAAAAACGGACGTTGGGCGGATCATTGGAAGATTCGAGAACTCAACGAACTCACAATTTCTTGACTTCATATCCCAGATACCCTAGACCACTTCCCCAGATGTCATTGTCAGATCAATTAACTTTTTATTTGAGAAAAGCTTCTTTTTTCGCGTAATTTCTGTGATGTTGATGAAAATGACCTAGAGCTTCAAATTTTAGCTGAAAACATTCAAGAACTTCCTTCTAGAGGTTCCCAAAGGCCGATCCACATCCCTTAAAATCAAATTTACAGGATAATTCAGGCAAGATTAGTTCAAAAGAAGAATATAAACACAAAATTTAACATAATCAAAATCTTTATTCATTATGTCAAGTATGAAGTATGGATTCTATCAATCATGTGTGGCCGTGTAGTCCCATTGGACAGGATCAGAGAGCAGCCAGAACGACAAATGAGGCACCTGGAAATTTAAAATTTAGGGTTACGGTACTAGAATTTCCTGGAAACGTCTCGCCAAAAATAAGACTAAAATATGATGAAAGTTTTCGAGATCAATTTACAAGAACCGTACAAATTCCATATCTCATAAAAGTGGCTGAACCTTCGACGGGGGTTGTTCGGAAGTCTCCGCGGGAAGGCCCTGTTGTTGTTTCGCCGCCAAATGTACTTTCAGTTTTCCATTGAAGGGTCTAACATGGGTTTTTCGGGTTTTTCCTATTTTGGTTCTACTTTTGGTTCTGGTTCTGGCTCTGGTTCATAATCTTCTCCAAAAGCCACAGCGATCAATGCAAGAGCCAAAAAGAGCCAATCGTTTTGTGGAACATTTCTAGTCTGACTAGGGAAGGCCCCAACTCGGGTGTGGCGATACGGGTGGTGACCTATATCATCTGAAAGCTGACATGTTCTTGATTCCAAATCTTTTTTAAAAAATGTCCTCTCCCCTCTCCTCTCCCTGTTTTCCTCCCCTCTTCTACGCCCTCCCCACTCCCTCT</canonical>
            <polymorphic>GAGGAGAGAACCAAGAGCCAGGAAGACAAAAACGGACGTTGGGCGGATCATTGGAAGATTCGAGAACTCAACGAACTCACAATTTCTTGACTTCATATCCCAGATACCCTAGACCACTTCCCCAGATGTCATTGTCAGATCAATTAACTTTTTATTTGAGAAAAGCTTCTTTTTTCGCGTAATTTCTGTGATGTTGATGAAAATGACCTAGAGCTTCAAATTTTAGCTGAAAACATTCAAGAACTTCCTTCTAGAGGTTCCCAAAGGCCGATCCACATCCCTTAAAATCAAATTTACAGGATAATTCAGGCAAGATTAGTTCAAAAGAAGAATATAAACACAAAATTTAACATAATCAAAATCTTTATTCATTATGTCAAGTATGAAGTATGGATTCTATCAATCATGTGTGGCCGTGTAGTCCCATTGGACAGGATCAGAGAGCAGCCAGAACGACAAATGAGGCACCTGGAAATTTAAAATTTAGGGTTACGGTACTRGAATTTCCTGGAAACGTCTCGCCAAAAATAAGACTAAAATATGATGAAAGTTTTCGAGATCAATTTACAAGAACCGTACAAATTCCATATCTCATAAAAGTGGCTGAACCTTCGACGGGGGTTGTTCGGAAGTCTCCGCGGGAAGGCCCTGTTGTTGTTTCGCCGCCAAATGTACTTTCAGTTTTCCATTGAAGGGTCTAACATGGGTTTTTCGGGTTTTTCCTATTTTGGTTCTACTTTTGGTTCTGGTTCTGGCTCTGGTTCATAATCTTCTCCAAAAGCCACAGCGATCAATGCAAGAGCCAAAAAGAGCCAATCGTTTTGTGGAACATTTCTAGTCTGACTAGGGAAGGCCCCAACTCGGGTGTGGCGATACGGGTGGTGACCTATATCATCTGAAAGCTGACATGTTCTTGATTCCAAATCTTTTTTAAAAAATGTCCTCTCCCCTCTCCTCTCCCTGTTTTCCTCCCCTCTTCTACGCCCTCCCCACTCCCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>337 247 156 109 99 43 9</canonical_bands>
                <polymorphic_bands>584 156 109 99 43 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAAAGAAGAATATAAACACAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGTAAATTGATCTCGAAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAAAAGAAGAATATAAACACAAAATTTAACATAATCAAAATCTTTATTCATTATGTCAAGTATGAAGTATGGATTCTATCAATCATGTGTGGCCGTGTAGTCCCATTGGACAGGATCAGAGAGCAGCCAGAACGACAAATGAGGCACCTGGAAATTTAAAATTTAGGGTTACGGTACTAGAATTTCCTGGAAACGTCTCGCCAAAAATAAGACTAAAATATGATGAAAGTTTTCGAGATCAATTTACAA</canonical_amplicon>
		<polymorphic_amplicon>TCAAAAGAAGAATATAAACACAAAATTTAACATAATCAAAATCTTTATTCATTATGTCAAGTATGAAGTATGGATTCTATCAATCATGTGTGGCCGTGTAGTCCCATTGGACAGGATCAGAGAGCAGCCAGAACGACAAATGAGGCACCTGGAAATTTAAAATTTAGGGTTACGGTACTRGAATTTCCTGGAAACGTCTCGCCAAAAATAAGACTAAAATATGATGAAAGTTTTCGAGATCAATTTACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13529</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>392966</contig_pos>
        <strand>+</strand>
        <context>GATTTCTTCA[C/T]AATTGTGACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACTGTAATAAATTTCAGTCGCGATACTCTACAAACATCGATTTCTTCA</left_flank>
        <right_flank>AATTGTGACATCTCCATCAAAATATTCTTTCGTCAGATTCCCATCTTCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCACCACCCGCATCGCCACACCCGAGTTCGGGCCTTCCCTAGTGAACTATTTTGAAAACACTGATTAACTTCCTTTTGAAACCTATCCTTATATATACAAACTGTTATCTTTGCTCTAGATCTTCATCTGATTTTATCATATAGTTCAAAAAAGAAAAAAAAAGAAACTTCCCATGCCGGGAATCGAACCCGGGCCGCGTGGGTGAAAACCACGAATCCTAACCACTAGACCACATGGGAGCGGCGAGAGGGGGGAGTGGGGAGGGCGTATAGGCGGGAGAGGAAAGTGGAGCAAGGAGAGGGGGAGGTGGAGGGGAGAGGGGAAATTGAAATTTGGGATTTTGAATTTTGGATTTCTAAAAGATTCTAAAGGGTTAAGAAATGAGATAGCATATTAAGATTGATCGAAAATTTAAGATTATTAAAAAATTGAGAATTTTAGGATCAAAAACTGTAATAAATTTCAGTCGCGATACTCTACAAACATCGATTTCTTCATAATTGTGACATCTCCATCAAAATATTCTTTCGTCAGATTCCCATCTTCTTCTGGAGCATTCGTCAGGGAAATTCGAATTCTGTCTTTTGCGTCTGGCTTATATTGAAATCCTTCACAACTGATTTCGATGATCTTATTGCTTTTTGCATTGATGGTTCCAATTGTGTCCTGGAATTTATTTGTTTTTCTTATTCGAGCCTAATTATCTTGGCTAGAGATAAAGATATCGAAAAGATGCTATTTAATAAATTGTGTAAAATTTTATGGTGTACATGCTAATAGTTGACAAATTTTTCATATCGTTTAAAGGAGCCGAGATAAATTAAGTCAAAGTTTAAGCGCGCTACCTATCGTCTTTTGAACTATACCGCTTCTTTGAATTTAAAGTCCAAGCGCGTCCCCGCTTCTTTGACCCTAATTATTTCGGTTCCTGTACACGTTATCAAAACGTTATAAACTGATGAAATGTTTAGCATTAAATTTTACACATTTTATCAGTA</canonical>
            <polymorphic>GCCACCACCCGCATCGCCACACCCGAGTTCGGGCCTTCCCTAGTGAACTATTTTGAAAACACTGATTAACTTCCTTTTGAAACCTATCCTTATATATACAAACTGTTATCTTTGCTCTAGATCTTCATCTGATTTTATCATATAGTTCAAAAAAGAAAAAAAAAGAAACTTCCCATGCCGGGAATCGAACCCGGGCCGCGTGGGTGAAAACCACGAATCCTAACCACTAGACCACATGGGAGCGGCGAGAGGGGGGAGTGGGGAGGGCGTATAGGCGGGAGAGGAAAGTGGAGCAAGGAGAGGGGGAGGTGGAGGGGAGAGGGGAAATTGAAATTTGGGATTTTGAATTTTGGATTTCTAAAAGATTCTAAAGGGTTAAGAAATGAGATAGCATATTAAGATTGATCGAAAATTTAAGATTATTAAAAAATTGAGAATTTTAGGATCAAAAACTGTAATAAATTTCAGTCGCGATACTCTACAAACATCGATTTCTTCAYAATTGTGACATCTCCATCAAAATATTCTTTCGTCAGATTCCCATCTTCTTCTGGAGCATTCGTCAGGGAAATTCGAATTCTGTCTTTTGCGTCTGGCTTATATTGAAATCCTTCACAACTGATTTCGATGATCTTATTGCTTTTTGCATTGATGGTTCCAATTGTGTCCTGGAATTTATTTGTTTTTCTTATTCGAGCCTAATTATCTTGGCTAGAGATAAAGATATCGAAAAGATGCTATTTAATAAATTGTGTAAAATTTTATGGTGTACATGCTAATAGTTGACAAATTTTTCATATCGTTTAAAGGAGCCGAGATAAATTAAGTCAAAGTTTAAGCGCGCTACCTATCGTCTTTTGAACTATACCGCTTCTTTGAATTTAAAGTCCAAGCGCGTCCCCGCTTCTTTGACCCTAATTATTTCGGTTCCTGTACACGTTATCAAAACGTTATAAACTGATGAAATGTTTAGCATTAAATTTTACACATTTTATCAGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGGGTTAAGAAATGAGATAGC</pcr_primer_p1>
		<pcr_primer_p2>TTGTGAAGGATTTCAATATAAGC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAGGGTTAAGAAATGAGATAGCATATTAAGATTGATCGAAAATTTAAGATTATTAAAAAATTGAGAATTTTAGGATCAAAAACTGTAATAAATTTCAGTCGCGATACTCTACAAACATCGATTTCTTCATAATTGTGACATCTCCATCAAAATATTCTTTCGTCAGATTCCCATCTTCTTCTGGAGCATTCGTCAGGGAAATTCGAATTCTGTCTTTTGCGTCTGGCTTATATTGAAATCCTTCACAA</canonical_amplicon>
		<polymorphic_amplicon>AAAGGGTTAAGAAATGAGATAGCATATTAAGATTGATCGAAAATTTAAGATTATTAAAAAATTGAGAATTTTAGGATCAAAAACTGTAATAAATTTCAGTCGCGATACTCTACAAACATCGATTTCTTCAYAATTGTGACATCTCCATCAAAATATTCTTTCGTCAGATTCCCATCTTCTTCTGGAGCATTCGTCAGGGAAATTCGAATTCTGTCTTTTGCGTCTGGCTTATATTGAAATCCTTCACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13530</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>392912</contig_pos>
        <strand>+</strand>
        <context>AATTTTAGGA[C/T]CAAAAACTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAGATTGATCGAAAATTTAAGATTATTAAAAAATTGAGAATTTTAGGA</left_flank>
        <right_flank>CAAAAACTGTAATAAATTTCAGTCGCGATACTCTACAAACATCGATTTCT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTTTTGAAAACAGATTTGGAATCAAAAAAATGTCAGCTTTCAGATGATATAGGCCACCACCCGCATCGCCACACCCGAGTTCGGGCCTTCCCTAGTGAACTATTTTGAAAACACTGATTAACTTCCTTTTGAAACCTATCCTTATATATACAAACTGTTATCTTTGCTCTAGATCTTCATCTGATTTTATCATATAGTTCAAAAAAGAAAAAAAAAGAAACTTCCCATGCCGGGAATCGAACCCGGGCCGCGTGGGTGAAAACCACGAATCCTAACCACTAGACCACATGGGAGCGGCGAGAGGGGGGAGTGGGGAGGGCGTATAGGCGGGAGAGGAAAGTGGAGCAAGGAGAGGGGGAGGTGGAGGGGAGAGGGGAAATTGAAATTTGGGATTTTGAATTTTGGATTTCTAAAAGATTCTAAAGGGTTAAGAAATGAGATAGCATATTAAGATTGATCGAAAATTTAAGATTATTAAAAAATTGAGAATTTTAGGATCAAAAACTGTAATAAATTTCAGTCGCGATACTCTACAAACATCGATTTCTTCATAATTGTGACATCTCCATCAAAATATTCTTTCGTCAGATTCCCATCTTCTTCTGGAGCATTCGTCAGGGAAATTCGAATTCTGTCTTTTGCGTCTGGCTTATATTGAAATCCTTCACAACTGATTTCGATGATCTTATTGCTTTTTGCATTGATGGTTCCAATTGTGTCCTGGAATTTATTTGTTTTTCTTATTCGAGCCTAATTATCTTGGCTAGAGATAAAGATATCGAAAAGATGCTATTTAATAAATTGTGTAAAATTTTATGGTGTACATGCTAATAGTTGACAAATTTTTCATATCGTTTAAAGGAGCCGAGATAAATTAAGTCAAAGTTTAAGCGCGCTACCTATCGTCTTTTGAACTATACCGCTTCTTTGAATTTAAAGTCCAAGCGCGTCCCCGCTTCTTTGACCCTAATTATTTCGGTTCCTGTACACGTTATCAA</canonical>
            <polymorphic>ACTTTTTGAAAACAGATTTGGAATCAAAAAAATGTCAGCTTTCAGATGATATAGGCCACCACCCGCATCGCCACACCCGAGTTCGGGCCTTCCCTAGTGAACTATTTTGAAAACACTGATTAACTTCCTTTTGAAACCTATCCTTATATATACAAACTGTTATCTTTGCTCTAGATCTTCATCTGATTTTATCATATAGTTCAAAAAAGAAAAAAAAAGAAACTTCCCATGCCGGGAATCGAACCCGGGCCGCGTGGGTGAAAACCACGAATCCTAACCACTAGACCACATGGGAGCGGCGAGAGGGGGGAGTGGGGAGGGCGTATAGGCGGGAGAGGAAAGTGGAGCAAGGAGAGGGGGAGGTGGAGGGGAGAGGGGAAATTGAAATTTGGGATTTTGAATTTTGGATTTCTAAAAGATTCTAAAGGGTTAAGAAATGAGATAGCATATTAAGATTGATCGAAAATTTAAGATTATTAAAAAATTGAGAATTTTAGGAYCAAAAACTGTAATAAATTTCAGTCGCGATACTCTACAAACATCGATTTCTTCATAATTGTGACATCTCCATCAAAATATTCTTTCGTCAGATTCCCATCTTCTTCTGGAGCATTCGTCAGGGAAATTCGAATTCTGTCTTTTGCGTCTGGCTTATATTGAAATCCTTCACAACTGATTTCGATGATCTTATTGCTTTTTGCATTGATGGTTCCAATTGTGTCCTGGAATTTATTTGTTTTTCTTATTCGAGCCTAATTATCTTGGCTAGAGATAAAGATATCGAAAAGATGCTATTTAATAAATTGTGTAAAATTTTATGGTGTACATGCTAATAGTTGACAAATTTTTCATATCGTTTAAAGGAGCCGAGATAAATTAAGTCAAAGTTTAAGCGCGCTACCTATCGTCTTTTGAACTATACCGCTTCTTTGAATTTAAAGTCCAAGCGCGTCCCCGCTTCTTTGACCCTAATTATTTCGGTTCCTGTACACGTTATCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>317 284 186 173 40</canonical_bands>
                <polymorphic_bands>317 284 226 173</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGGGTTAAGAAATGAGATAGC</pcr_primer_p1>
		<pcr_primer_p2>TTGTGAAGGATTTCAATATAAGC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAGGGTTAAGAAATGAGATAGCATATTAAGATTGATCGAAAATTTAAGATTATTAAAAAATTGAGAATTTTAGGATCAAAAACTGTAATAAATTTCAGTCGCGATACTCTACAAACATCGATTTCTTCATAATTGTGACATCTCCATCAAAATATTCTTTCGTCAGATTCCCATCTTCTTCTGGAGCATTCGTCAGGGAAATTCGAATTCTGTCTTTTGCGTCTGGCTTATATTGAAATCCTTCACAA</canonical_amplicon>
		<polymorphic_amplicon>AAAGGGTTAAGAAATGAGATAGCATATTAAGATTGATCGAAAATTTAAGATTATTAAAAAATTGAGAATTTTAGGAYCAAAAACTGTAATAAATTTCAGTCGCGATACTCTACAAACATCGATTTCTTCATAATTGTGACATCTCCATCAAAATATTCTTTCGTCAGATTCCCATCTTCTTCTGGAGCATTCGTCAGGGAAATTCGAATTCTGTCTTTTGCGTCTGGCTTATATTGAAATCCTTCACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13569</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>415717</contig_pos>
        <strand></strand>
        <context>cgaatttcta[A/G]aaaattgggc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTGAAAATTGGATCAAGTTTTGGCTGGTACGCTCTACTGCGAATTTCTA</left_flank>
        <right_flank>AAAATTGGGCATAACTTGCTCAGTTTTTGTCCAGTTTTAACGAAATTTAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAGCACCACAAGAAGTACAGAATTCAGAAGACGTGGAAATCTCAGAAGCCGACGATGAGCAGGATTCTGAAGATGACGATTTTGGTGCATTTGAGGAGCAACAAGGTAATAATGGTAATTTTTTTGAAATTTGAAATTTTTCAAAAATCAAGCTTTTTCAGATTTCATGGATGATTTTGATGTACCGTTAGTACCAACACAAGCGAATGGGAATCATCAGGGAATTTATTGGGGAGATGATTCAGATGACGATCAGGGTAAGATTTTTTTATGGAATTTTTTGAACTTTTTAAATTTCCCGCCTAGCTTAAACGCGCTCCACTGCGAATTTCAAGAAATTAGCTGTAACTCGCTTATTTCTTACCCAATTTTGACGAAAGTTAGATTTTTGAATTTCCCGCGTTTTGGGCTTTAAAATGCATATAACCATGAACCATTTCTCTCAAACTTGAAAATTGGATCAAGTTTTGGCTGGTACGCTCTACTGCGAATTTCTAAAAAATTGGGCATAACTTGCTCAGTTTTTGTCCAGTTTTAACGAAATTTAGATTTTTGAATTTTCAGCGTTTTGGGCTTCAAAATAAATATAATCATGACCTATTTCTTTTCACTTTTGAAATTGAGCTACGCGGAGCTCAGCTGGCGCCTTTAATAAAAAAAATTTAGACAAAAAGGTCTCTTTATTTTTCAGTCCCTCCTGCTAACAATAGTCAGAAGATTCGAAAACCAAGATATTTGGAATCATCAGATAGTTCTGAAAGTTACAGCGACGATGAAGAGCCGATTCCAAAAATTCCGCTGTTTGTTATTTCGGATTCTGAAGAGGATGAAGGTGAGTTTCAAAATTTCTCAAATTTGAAAAAAAATTGGAATATCTAACTAAAGGAAATTAGCTGTAACTCGCTTATTTTTCGTCCATTTTTAACGAAAGTTACATTTTTGAATTTCCCGCGTTCTGGGCTTTGAAATGAGTATAAACATGACCCAGCTTCTTAAAA</canonical>
            <polymorphic>AGAAGCACCACAAGAAGTACAGAATTCAGAAGACGTGGAAATCTCAGAAGCCGACGATGAGCAGGATTCTGAAGATGACGATTTTGGTGCATTTGAGGAGCAACAAGGTAATAATGGTAATTTTTTTGAAATTTGAAATTTTTCAAAAATCAAGCTTTTTCAGATTTCATGGATGATTTTGATGTACCGTTAGTACCAACACAAGCGAATGGGAATCATCAGGGAATTTATTGGGGAGATGATTCAGATGACGATCAGGGTAAGATTTTTTTATGGAATTTTTTGAACTTTTTAAATTTCCCGCCTAGCTTAAACGCGCTCCACTGCGAATTTCAAGAAATTAGCTGTAACTCGCTTATTTCTTACCCAATTTTGACGAAAGTTAGATTTTTGAATTTCCCGCGTTTTGGGCTTTAAAATGCATATAACCATGAACCATTTCTCTCAAACTTGAAAATTGGATCAAGTTTTGGCTGGTACGCTCTACTGCGAATTTCTARAAAATTGGGCATAACTTGCTCAGTTTTTGTCCAGTTTTAACGAAATTTAGATTTTTGAATTTTCAGCGTTTTGGGCTTCAAAATAAATATAATCATGACCTATTTCTTTTCACTTTTGAAATTGAGCTACGCGGAGCTCAGCTGGCGCCTTTAATAAAAAAAATTTAGACAAAAAGGTCTCTTTATTTTTCAGTCCCTCCTGCTAACAATAGTCAGAAGATTCGAAAACCAAGATATTTGGAATCATCAGATAGTTCTGAAAGTTACAGCGACGATGAAGAGCCGATTCCAAAAATTCCGCTGTTTGTTATTTCGGATTCTGAAGAGGATGAAGGTGAGTTTCAAAATTTCTCAAATTTGAAAAAAAATTGGAATATCTAACTAAAGGAAATTAGCTGTAACTCGCTTATTTTTCGTCCATTTTTAACGAAAGTTACATTTTTGAATTTCCCGCGTTCTGGGCTTTGAAATGAGTATAAACATGACCCAGCTTCTTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACGATCAGGGTAAGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAAATAAAGAGACCTTTTTGTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>440</pcr_amplicon_size>
		<canonical_amplicon>GACGATCAGGGTAAGATTTTTTTATGGAATTTTTTGAACTTTTTAAATTTCCCGCCTAGCTTAAACGCGCTCCACTGCGAATTTCAAGAAATTAGCTGTAACTCGCTTATTTCTTACCCAATTTTGACGAAAGTTAGATTTTTGAATTTCCCGCGTTTTGGGCTTTAAAATGCATATAACCATGAACCATTTCTCTCAAACTTGAAAATTGGATCAAGTTTTGGCTGGTACGCTCTACTGCGAATTTCTAAAAAATTGGGCATAACTTGCTCAGTTTTTGTCCAGTTTTAACGAAATTTAGATTTTTGAATTTTCAGCGTTTTGGGCTTCAAAATAAATATAATCATGACCTATTTCTTTTCACTTTTGAAATTGAGCTACGCGGAGCTCAGCTGGCGCCTTTAATAAAAAAAATTTAGACAAAAAGGTCTCTTTATTTT</canonical_amplicon>
		<polymorphic_amplicon>GACGATCAGGGTAAGATTTTTTTATGGAATTTTTTGAACTTTTTAAATTTCCCGCCTAGCTTAAACGCGCTCCACTGCGAATTTCAAGAAATTAGCTGTAACTCGCTTATTTCTTACCCAATTTTGACGAAAGTTAGATTTTTGAATTTCCCGCGTTTTGGGCTTTAAAATGCATATAACCATGAACCATTTCTCTCAAACTTGAAAATTGGATCAAGTTTTGGCTGGTACGCTCTACTGCGAATTTCTARAAAATTGGGCATAACTTGCTCAGTTTTTGTCCAGTTTTAACGAAATTTAGATTTTTGAATTTTCAGCGTTTTGGGCTTCAAAATAAATATAATCATGACCTATTTCTTTTCACTTTTGAAATTGAGCTACGCGGAGCTCAGCTGGCGCCTTTAATAAAAAAAATTTAGACAAAAAGGTCTCTTTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13570</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>416025</contig_pos>
        <strand>+</strand>
        <context>CCGCTGTTYG[A/T]TATTTCGGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAAAGTTACAGCGACGATGAAGAGCCGATTCCAAAAATTCCGCTGTTTG</left_flank>
        <right_flank>TATTTCGGATTCTGAAGAGGATGAAGGTGAGTTTCAAAATTTCTCAAATT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTAAACGCGCTCCACTGCGAATTTCAAGAAATTAGCTGTAACTCGCTTATTTCTTACCCAATTTTGACGAAAGTTAGATTTTTGAATTTCCCGCGTTTTGGGCTTTAAAATGCATATAACCATGAACCATTTCTCTCAAACTTGAAAATTGGATCAAGTTTTGGCTGGTACGCTCTACTGCGAATTTCTAAAAAATTGGGCATAACTTGCTCAGTTTTTGTCCAGTTTTAACGAAATTTAGATTTTTGAATTTTCAGCGTTTTGGGCTTCAAAATAAATATAATCATGACCTATTTCTTTTCACTTTTGAAATTGAGCTACGCGGAGCTCAGCTGGCGCCTTTAATAAAAAAAATTTAGACAAAAAGGTCTCTTTATTTTTCAGTCCCTCCTGCTAACAATAGTCAGAAGATTCGAAAACCAAGATATTTGGAATCATCAGATAGTTCTGAAAGTTACAGCGACGATGAAGAGCCGATTCCAAAAATTCCGCTGTTTGTTATTTCGGATTCTGAAGAGGATGAAGGTGAGTTTCAAAATTTCTCAAATTTGAAAAAAAATTGGAATATCTAACTAAAGGAAATTAGCTGTAACTCGCTTATTTTTCGTCCATTTTTAACGAAAGTTACATTTTTGAATTTCCCGCGTTCTGGGCTTTGAAATGAGTATAAACATGACCCAGCTTCTTAAAAGGTTTAAAAAAGGAGCTAATCGATCGTTCGGTAAGTTCGCTCCACTGCAAGTCTCAGGAAAATGGATGTAACTCTCTTAGTTTCTGTTCAATCTGAATCAAAATTGGATTTTTGAACTTCTCACGTTTTGAGCTTCAAAATGAGTATAAACATGGCTTAGTTTCTAAAAAATTGAAAATGAGCTAAGCGATCGTTCGGCAAGTTCGCTCCACTGCGAATTTCAAGAAATCAGCTGTAACTCGCTTATTTCTTGCCCAATTTTGACGAACACTAGATTTTTGAATTTCCCGCGTTCTGGGCTTCCAAAT</canonical>
            <polymorphic>CTTAAACGCGCTCCACTGCGAATTTCAAGAAATTAGCTGTAACTCGCTTATTTCTTACCCAATTTTGACGAAAGTTAGATTTTTGAATTTCCCGCGTTTTGGGCTTTAAAATGCATATAACCATGAACCATTTCTCTCAAACTTGAAAATTGGATCAAGTTTTGGCTGGTACGCTCTACTGCGAATTTCTAAAAAATTGGGCATAACTTGCTCAGTTTTTGTCCAGTTTTAACGAAATTTAGATTTTTGAATTTTCAGCGTTTTGGGCTTCAAAATAAATATAATCATGACCTATTTCTTTTCACTTTTGAAATTGAGCTACGCGGAGCTCAGCTGGCGCCTTTAATAAAAAAAATTTAGACAAAAAGGTCTCTTTATTTTTCAGTCCCTCCTGCTAACAATAGTCAGAAGATTCGAAAACCAAGATATTTGGAATCATCAGATAGTTCTGAAAGTTACAGCGACGATGAAGAGCCGATTCCAAAAATTCCGCTGTTTGWTATTTCGGATTCTGAAGAGGATGAAGGTGAGTTTCAAAATTTCTCAAATTTGAAAAAAAATTGGAATATCTAACTAAAGGAAATTAGCTGTAACTCGCTTATTTTTCGTCCATTTTTAACGAAAGTTACATTTTTGAATTTCCCGCGTTCTGGGCTTTGAAATGAGTATAAACATGACCCAGCTTCTTAAAAGGTTTAAAAAAGGAGCTAATCGATCGTTCGGTAAGTTCGCTCCACTGCAAGTCTCAGGAAAATGGATGTAACTCTCTTAGTTTCTGTTCAATCTGAATCAAAATTGGATTTTTGAACTTCTCACGTTTTGAGCTTCAAAATGAGTATAAACATGGCTTAGTTTCTAAAAAATTGAAAATGAGCTAAGCGATCGTTCGGCAAGTTCGCTCCACTGCGAATTTCAAGAAATCAGCTGTAACTCGCTTATTTCTTGCCCAATTTTGACGAACACTAGATTTTTGAATTTCCCGCGTTCTGGGCTTCCAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACCAAGATATTTGGAATCA</pcr_primer_p1>
		<pcr_primer_p2>ACTACGACCGCTTAGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>635</pcr_amplicon_size>
		<canonical_amplicon>AAAACCAAGATATTTGGAATCATCAGATAGTTCTGAAAGTTACAGCGACGATGAAGAGCCGATTCCAAAAATTCCGCTGTTTGTTATTTCGGATTCTGAAGAG</canonical_amplicon>
		<polymorphic_amplicon>AAAACCAAGATATTTGGAATCATCAGATAGTTCTGAAAGTTACAGCGACGATGAAGAGCCGATTCCAAAAATTCCGCTGTTTGWTATTTCGGATTCTGAAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13571</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>416023</contig_pos>
        <strand>+</strand>
        <context>TTCCGCTGTT[C/T]GWTATTTCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTGAAAGTTACAGCGACGATGAAGAGCCGATTCCAAAAATTCCGCTGTT</left_flank>
        <right_flank>GTTATTTCGGATTCTGAAGAGGATGAAGGTGAGTTTCAAAATTTCTCAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTTAAACGCGCTCCACTGCGAATTTCAAGAAATTAGCTGTAACTCGCTTATTTCTTACCCAATTTTGACGAAAGTTAGATTTTTGAATTTCCCGCGTTTTGGGCTTTAAAATGCATATAACCATGAACCATTTCTCTCAAACTTGAAAATTGGATCAAGTTTTGGCTGGTACGCTCTACTGCGAATTTCTAAAAAATTGGGCATAACTTGCTCAGTTTTTGTCCAGTTTTAACGAAATTTAGATTTTTGAATTTTCAGCGTTTTGGGCTTCAAAATAAATATAATCATGACCTATTTCTTTTCACTTTTGAAATTGAGCTACGCGGAGCTCAGCTGGCGCCTTTAATAAAAAAAATTTAGACAAAAAGGTCTCTTTATTTTTCAGTCCCTCCTGCTAACAATAGTCAGAAGATTCGAAAACCAAGATATTTGGAATCATCAGATAGTTCTGAAAGTTACAGCGACGATGAAGAGCCGATTCCAAAAATTCCGCTGTTTGTTATTTCGGATTCTGAAGAGGATGAAGGTGAGTTTCAAAATTTCTCAAATTTGAAAAAAAATTGGAATATCTAACTAAAGGAAATTAGCTGTAACTCGCTTATTTTTCGTCCATTTTTAACGAAAGTTACATTTTTGAATTTCCCGCGTTCTGGGCTTTGAAATGAGTATAAACATGACCCAGCTTCTTAAAAGGTTTAAAAAAGGAGCTAATCGATCGTTCGGTAAGTTCGCTCCACTGCAAGTCTCAGGAAAATGGATGTAACTCTCTTAGTTTCTGTTCAATCTGAATCAAAATTGGATTTTTGAACTTCTCACGTTTTGAGCTTCAAAATGAGTATAAACATGGCTTAGTTTCTAAAAAATTGAAAATGAGCTAAGCGATCGTTCGGCAAGTTCGCTCCACTGCGAATTTCAAGAAATCAGCTGTAACTCGCTTATTTCTTGCCCAATTTTGACGAACACTAGATTTTTGAATTTCCCGCGTTCTGGGCTTCCAA</canonical>
            <polymorphic>AGCTTAAACGCGCTCCACTGCGAATTTCAAGAAATTAGCTGTAACTCGCTTATTTCTTACCCAATTTTGACGAAAGTTAGATTTTTGAATTTCCCGCGTTTTGGGCTTTAAAATGCATATAACCATGAACCATTTCTCTCAAACTTGAAAATTGGATCAAGTTTTGGCTGGTACGCTCTACTGCGAATTTCTAAAAAATTGGGCATAACTTGCTCAGTTTTTGTCCAGTTTTAACGAAATTTAGATTTTTGAATTTTCAGCGTTTTGGGCTTCAAAATAAATATAATCATGACCTATTTCTTTTCACTTTTGAAATTGAGCTACGCGGAGCTCAGCTGGCGCCTTTAATAAAAAAAATTTAGACAAAAAGGTCTCTTTATTTTTCAGTCCCTCCTGCTAACAATAGTCAGAAGATTCGAAAACCAAGATATTTGGAATCATCAGATAGTTCTGAAAGTTACAGCGACGATGAAGAGCCGATTCCAAAAATTCCGCTGTTYGTTATTTCGGATTCTGAAGAGGATGAAGGTGAGTTTCAAAATTTCTCAAATTTGAAAAAAAATTGGAATATCTAACTAAAGGAAATTAGCTGTAACTCGCTTATTTTTCGTCCATTTTTAACGAAAGTTACATTTTTGAATTTCCCGCGTTCTGGGCTTTGAAATGAGTATAAACATGACCCAGCTTCTTAAAAGGTTTAAAAAAGGAGCTAATCGATCGTTCGGTAAGTTCGCTCCACTGCAAGTCTCAGGAAAATGGATGTAACTCTCTTAGTTTCTGTTCAATCTGAATCAAAATTGGATTTTTGAACTTCTCACGTTTTGAGCTTCAAAATGAGTATAAACATGGCTTAGTTTCTAAAAAATTGAAAATGAGCTAAGCGATCGTTCGGCAAGTTCGCTCCACTGCGAATTTCAAGAAATCAGCTGTAACTCGCTTATTTCTTGCCCAATTTTGACGAACACTAGATTTTTGAATTTCCCGCGTTCTGGGCTTCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACCAAGATATTTGGAATCA</pcr_primer_p1>
		<pcr_primer_p2>ACTACGACCGCTTAGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>635</pcr_amplicon_size>
		<canonical_amplicon>AAAACCAAGATATTTGGAATCATCAGATAGTTCTGAAAGTTACAGCGACGATGAAGAGCCGATTCCAAAAATTCCGCTGTTTGTTATTTCGGATTCTGAAG</canonical_amplicon>
		<polymorphic_amplicon>AAAACCAAGATATTTGGAATCATCAGATAGTTCTGAAAGTTACAGCGACGATGAAGAGCCGATTCCAAAAATTCCGCTGTTYGTTATTTCGGATTCTGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13572</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>415982</contig_pos>
        <strand>+</strand>
        <context>TTCTGAAAGT[G/T]ACAGCGACGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGAAGATTCGAAAACCAAGATATTTGGAATCATCAGATAGTTCTGAAAGT</left_flank>
        <right_flank>ACAGCGACGATGAAGAGCCGATTCCAAAAATTCCGCTGTTTGTTATTTCG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTATGGAATTTTTTGAACTTTTTAAATTTCCCGCCTAGCTTAAACGCGCTCCACTGCGAATTTCAAGAAATTAGCTGTAACTCGCTTATTTCTTACCCAATTTTGACGAAAGTTAGATTTTTGAATTTCCCGCGTTTTGGGCTTTAAAATGCATATAACCATGAACCATTTCTCTCAAACTTGAAAATTGGATCAAGTTTTGGCTGGTACGCTCTACTGCGAATTTCTAAAAAATTGGGCATAACTTGCTCAGTTTTTGTCCAGTTTTAACGAAATTTAGATTTTTGAATTTTCAGCGTTTTGGGCTTCAAAATAAATATAATCATGACCTATTTCTTTTCACTTTTGAAATTGAGCTACGCGGAGCTCAGCTGGCGCCTTTAATAAAAAAAATTTAGACAAAAAGGTCTCTTTATTTTTCAGTCCCTCCTGCTAACAATAGTCAGAAGATTCGAAAACCAAGATATTTGGAATCATCAGATAGTTCTGAAAGTTACAGCGACGATGAAGAGCCGATTCCAAAAATTCCGCTGTTTGTTATTTCGGATTCTGAAGAGGATGAAGGTGAGTTTCAAAATTTCTCAAATTTGAAAAAAAATTGGAATATCTAACTAAAGGAAATTAGCTGTAACTCGCTTATTTTTCGTCCATTTTTAACGAAAGTTACATTTTTGAATTTCCCGCGTTCTGGGCTTTGAAATGAGTATAAACATGACCCAGCTTCTTAAAAGGTTTAAAAAAGGAGCTAATCGATCGTTCGGTAAGTTCGCTCCACTGCAAGTCTCAGGAAAATGGATGTAACTCTCTTAGTTTCTGTTCAATCTGAATCAAAATTGGATTTTTGAACTTCTCACGTTTTGAGCTTCAAAATGAGTATAAACATGGCTTAGTTTCTAAAAAATTGAAAATGAGCTAAGCGATCGTTCGGCAAGTTCGCTCCACTGCGAATTTCAAGAAATCAGCTGTAACTCGCTTATTTCTTGCCCAATTTTGAC</canonical>
            <polymorphic>TTTTTTTATGGAATTTTTTGAACTTTTTAAATTTCCCGCCTAGCTTAAACGCGCTCCACTGCGAATTTCAAGAAATTAGCTGTAACTCGCTTATTTCTTACCCAATTTTGACGAAAGTTAGATTTTTGAATTTCCCGCGTTTTGGGCTTTAAAATGCATATAACCATGAACCATTTCTCTCAAACTTGAAAATTGGATCAAGTTTTGGCTGGTACGCTCTACTGCGAATTTCTAAAAAATTGGGCATAACTTGCTCAGTTTTTGTCCAGTTTTAACGAAATTTAGATTTTTGAATTTTCAGCGTTTTGGGCTTCAAAATAAATATAATCATGACCTATTTCTTTTCACTTTTGAAATTGAGCTACGCGGAGCTCAGCTGGCGCCTTTAATAAAAAAAATTTAGACAAAAAGGTCTCTTTATTTTTCAGTCCCTCCTGCTAACAATAGTCAGAAGATTCGAAAACCAAGATATTTGGAATCATCAGATAGTTCTGAAAGTKACAGCGACGATGAAGAGCCGATTCCAAAAATTCCGCTGTTTGTTATTTCGGATTCTGAAGAGGATGAAGGTGAGTTTCAAAATTTCTCAAATTTGAAAAAAAATTGGAATATCTAACTAAAGGAAATTAGCTGTAACTCGCTTATTTTTCGTCCATTTTTAACGAAAGTTACATTTTTGAATTTCCCGCGTTCTGGGCTTTGAAATGAGTATAAACATGACCCAGCTTCTTAAAAGGTTTAAAAAAGGAGCTAATCGATCGTTCGGTAAGTTCGCTCCACTGCAAGTCTCAGGAAAATGGATGTAACTCTCTTAGTTTCTGTTCAATCTGAATCAAAATTGGATTTTTGAACTTCTCACGTTTTGAGCTTCAAAATGAGTATAAACATGGCTTAGTTTCTAAAAAATTGAAAATGAGCTAAGCGATCGTTCGGCAAGTTCGCTCCACTGCGAATTTCAAGAAATCAGCTGTAACTCGCTTATTTCTTGCCCAATTTTGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAAGGTCTCTTTATTTTTCA</pcr_primer_p1>
		<pcr_primer_p2>ATTTGAGAAATTTTGAAACTCAC</pcr_primer_p2>
		<pcr_amplicon_size>188</pcr_amplicon_size>
		<canonical_amplicon>CAAAAAGGTCTCTTTATTTTTCAGTCCCTCCTGCTAACAATAGTCAGAAGATTCGAAAACCAAGATATTTGGAATCATCAGATAGTTCTGAAAGTTACAGCGACGATGAAGAGCCGATTCCAAAAATTCCGCTGTTTGTTATTTCGGATTCTGAAGAGGATGAAGGTGAGTTTCAAAATTTCTCAAAT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAAGGTCTCTTTATTTTTCAGTCCCTCCTGCTAACAATAGTCAGAAGATTCGAAAACCAAGATATTTGGAATCATCAGATAGTTCTGAAAGTKACAGCGACGATGAAGAGCCGATTCCAAAAATTCCGCTGTTTGTTATTTCGGATTCTGAAGAGGATGAAGGTGAGTTTCAAAATTTCTCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13573</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>415964</contig_pos>
        <strand>+</strand>
        <context>TTTGGAATCA[A/T]CAGATAGTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCCTGCTAACAATAGTCAGAAGATTCGAAAACCAAGATATTTGGAATCA</left_flank>
        <right_flank>CAGATAGTTCTGAAAGTTACAGCGACGATGAAGAGCCGATTCCAAAAATT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGACGATCAGGGTAAGATTTTTTTATGGAATTTTTTGAACTTTTTAAATTTCCCGCCTAGCTTAAACGCGCTCCACTGCGAATTTCAAGAAATTAGCTGTAACTCGCTTATTTCTTACCCAATTTTGACGAAAGTTAGATTTTTGAATTTCCCGCGTTTTGGGCTTTAAAATGCATATAACCATGAACCATTTCTCTCAAACTTGAAAATTGGATCAAGTTTTGGCTGGTACGCTCTACTGCGAATTTCTAAAAAATTGGGCATAACTTGCTCAGTTTTTGTCCAGTTTTAACGAAATTTAGATTTTTGAATTTTCAGCGTTTTGGGCTTCAAAATAAATATAATCATGACCTATTTCTTTTCACTTTTGAAATTGAGCTACGCGGAGCTCAGCTGGCGCCTTTAATAAAAAAAATTTAGACAAAAAGGTCTCTTTATTTTTCAGTCCCTCCTGCTAACAATAGTCAGAAGATTCGAAAACCAAGATATTTGGAATCATCAGATAGTTCTGAAAGTTACAGCGACGATGAAGAGCCGATTCCAAAAATTCCGCTGTTTGTTATTTCGGATTCTGAAGAGGATGAAGGTGAGTTTCAAAATTTCTCAAATTTGAAAAAAAATTGGAATATCTAACTAAAGGAAATTAGCTGTAACTCGCTTATTTTTCGTCCATTTTTAACGAAAGTTACATTTTTGAATTTCCCGCGTTCTGGGCTTTGAAATGAGTATAAACATGACCCAGCTTCTTAAAAGGTTTAAAAAAGGAGCTAATCGATCGTTCGGTAAGTTCGCTCCACTGCAAGTCTCAGGAAAATGGATGTAACTCTCTTAGTTTCTGTTCAATCTGAATCAAAATTGGATTTTTGAACTTCTCACGTTTTGAGCTTCAAAATGAGTATAAACATGGCTTAGTTTCTAAAAAATTGAAAATGAGCTAAGCGATCGTTCGGCAAGTTCGCTCCACTGCGAATTTCAAGAAATCAGCTGTAACTCGCTTAT</canonical>
            <polymorphic>ATGACGATCAGGGTAAGATTTTTTTATGGAATTTTTTGAACTTTTTAAATTTCCCGCCTAGCTTAAACGCGCTCCACTGCGAATTTCAAGAAATTAGCTGTAACTCGCTTATTTCTTACCCAATTTTGACGAAAGTTAGATTTTTGAATTTCCCGCGTTTTGGGCTTTAAAATGCATATAACCATGAACCATTTCTCTCAAACTTGAAAATTGGATCAAGTTTTGGCTGGTACGCTCTACTGCGAATTTCTAAAAAATTGGGCATAACTTGCTCAGTTTTTGTCCAGTTTTAACGAAATTTAGATTTTTGAATTTTCAGCGTTTTGGGCTTCAAAATAAATATAATCATGACCTATTTCTTTTCACTTTTGAAATTGAGCTACGCGGAGCTCAGCTGGCGCCTTTAATAAAAAAAATTTAGACAAAAAGGTCTCTTTATTTTTCAGTCCCTCCTGCTAACAATAGTCAGAAGATTCGAAAACCAAGATATTTGGAATCAWCAGATAGTTCTGAAAGTTACAGCGACGATGAAGAGCCGATTCCAAAAATTCCGCTGTTTGTTATTTCGGATTCTGAAGAGGATGAAGGTGAGTTTCAAAATTTCTCAAATTTGAAAAAAAATTGGAATATCTAACTAAAGGAAATTAGCTGTAACTCGCTTATTTTTCGTCCATTTTTAACGAAAGTTACATTTTTGAATTTCCCGCGTTCTGGGCTTTGAAATGAGTATAAACATGACCCAGCTTCTTAAAAGGTTTAAAAAAGGAGCTAATCGATCGTTCGGTAAGTTCGCTCCACTGCAAGTCTCAGGAAAATGGATGTAACTCTCTTAGTTTCTGTTCAATCTGAATCAAAATTGGATTTTTGAACTTCTCACGTTTTGAGCTTCAAAATGAGTATAAACATGGCTTAGTTTCTAAAAAATTGAAAATGAGCTAAGCGATCGTTCGGCAAGTTCGCTCCACTGCGAATTTCAAGAAATCAGCTGTAACTCGCTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>468 273 153 57 34 9 6</canonical_bands>
                <polymorphic_bands>468 273 153 57 43 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAAGGTCTCTTTATTTTTCA</pcr_primer_p1>
		<pcr_primer_p2>ATTTGAGAAATTTTGAAACTCAC</pcr_primer_p2>
		<pcr_amplicon_size>188</pcr_amplicon_size>
		<canonical_amplicon>CAAAAAGGTCTCTTTATTTTTCAGTCCCTCCTGCTAACAATAGTCAGAAGATTCGAAAACCAAGATATTTGGAATCATCAGATAGTTCTGAAAGTTACAGCGACGATGAAGAGCCGATTCCAAAAATTCCGCTGTTTGTTATTTCGGATTCTGAAGAGGATGAAGGTGAGTTTCAAAATTTCTCAAAT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAAGGTCTCTTTATTTTTCAGTCCCTCCTGCTAACAATAGTCAGAAGATTCGAAAACCAAGATATTTGGAATCAWCAGATAGTTCTGAAAGTTACAGCGACGATGAAGAGCCGATTCCAAAAATTCCGCTGTTTGTTATTTCGGATTCTGAAGAGGATGAAGGTGAGTTTCAAAATTTCTCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13574</snp_id>
        <super_contig>c007700673.Contig4</super_contig>
        <contig_pos>8458</contig_pos>
        <strand>+</strand>
        <context>TAGACTCTTA[G/T]TTTTCTGTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCCCCAGAGACATTCTTCTTTTCTTTATTCTTGTAAGGAGTAGACTCTTA</left_flank>
        <right_flank>TTTTCTGTCTCTCCTTTCACATAAATTGCATTATACAAAAAGACACGAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGACATGTCCACAGTGAGCTGCGACATGAAGAGGTGTCAAGTAATCAACAGTGACGTCATCAACTGGAGCACGATGGTATAGAAGAGTTCTGGCAGCATCCACATGGTCTCCCTGAGCAGCCATATGCAATGGAGCCAGTCCATTCTTAGTTTTTGCTGAGATTGGAGCTCCTTGGACAACAAGAAGATCCACAACTTGATCGTGTCCTGAACGGGCCGCACAATGAAGTGGAGTAAGGAGATCTTTGGTTCTGGAATCGATGATGGCTCCGCGAGCAAGCAAAACATTGGCCATGTTGATTCGTCCCCATTTTGTTGCAACGTGGAGTGGACTGAAAAGAATAGAAGCATTTTTAGTTGATGAAGAAAAGCGCGGAGACTTCTTTGGAAGACGATGTCTTTGTATGTGACACAATTTGAAGAAGTGCACACTTGGGCACCAGAAGTGTCCCCAGAGACATTCTTCTTTTCTTTATTCTTGTAAGGAGTAGACTCTTAGTTTTCTGTCTCTCCTTTCACATAAATTGCATTATACAAAAAGACACGAAAAAATGCAAACGGAGCACATGGGGCTCATTTGAGACCTCGTGATACTAATTAGTGATAAAATAAAGGGGTCAGATTCTCTTCGAAAGTATCTTCTTACATTTTTTGTGTTTCTTCAGCATTTATAAAATTAGCACCATAACAGAAACACTTACCTAATATTGTGTCTAGCTTGATAGTTAACATTTGCTCCTTTGTCCAACAACAACGTTCCGACATTCTCATGACCATAATGAGCAGCAATATGGAGAGGAGTGAATCCTGACTTTGATGTGACATCTGGATTGTGTTCGTTCTGAAAATCAAAGAATCTAGAACCCTGTCAATTTTAATTTTTGATACCTGGAGTAAAAGTGTGGCTGCTTTCGTGTCGTCCTTCTTTGCAGCAATATGAAGTGCCGGAAGTCGTACTTTTCCTTTAGCGTCGTTCTCCAGAAGAACAGCCACAACACG</canonical>
            <polymorphic>CTGACATGTCCACAGTGAGCTGCGACATGAAGAGGTGTCAAGTAATCAACAGTGACGTCATCAACTGGAGCACGATGGTATAGAAGAGTTCTGGCAGCATCCACATGGTCTCCCTGAGCAGCCATATGCAATGGAGCCAGTCCATTCTTAGTTTTTGCTGAGATTGGAGCTCCTTGGACAACAAGAAGATCCACAACTTGATCGTGTCCTGAACGGGCCGCACAATGAAGTGGAGTAAGGAGATCTTTGGTTCTGGAATCGATGATGGCTCCGCGAGCAAGCAAAACATTGGCCATGTTGATTCGTCCCCATTTTGTTGCAACGTGGAGTGGACTGAAAAGAATAGAAGCATTTTTAGTTGATGAAGAAAAGCGCGGAGACTTCTTTGGAAGACGATGTCTTTGTATGTGACACAATTTGAAGAAGTGCACACTTGGGCACCAGAAGTGTCCCCAGAGACATTCTTCTTTTCTTTATTCTTGTAAGGAGTAGACTCTTAKTTTTCTGTCTCTCCTTTCACATAAATTGCATTATACAAAAAGACACGAAAAAATGCAAACGGAGCACATGGGGCTCATTTGAGACCTCGTGATACTAATTAGTGATAAAATAAAGGGGTCAGATTCTCTTCGAAAGTATCTTCTTACATTTTTTGTGTTTCTTCAGCATTTATAAAATTAGCACCATAACAGAAACACTTACCTAATATTGTGTCTAGCTTGATAGTTAACATTTGCTCCTTTGTCCAACAACAACGTTCCGACATTCTCATGACCATAATGAGCAGCAATATGGAGAGGAGTGAATCCTGACTTTGATGTGACATCTGGATTGTGTTCGTTCTGAAAATCAAAGAATCTAGAACCCTGTCAATTTTAATTTTTGATACCTGGAGTAAAAGTGTGGCTGCTTTCGTGTCGTCCTTCTTTGCAGCAATATGAAGTGCCGGAAGTCGTACTTTTCCTTTAGCGTCGTTCTCCAGAAGAACAGCCACAACACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 338 114 33 11</canonical_bands>
                <polymorphic_bands>842 114 33 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGACGATGTCTTTGTATGTGAC</pcr_primer_p1>
		<pcr_primer_p2>ATACTTTCGAAGAGAATCTGACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGACGATGTCTTTGTATGTGACACAATTTGAAGAAGTGCACACTTGGGCACCAGAAGTGTCCCCAGAGACATTCTTCTTTTCTTTATTCTTGTAAGGAGTAGACTCTTAGTTTTCTGTCTCTCCTTTCACATAAATTGCATTATACAAAAAGACACGAAAAAATGCAAACGGAGCACATGGGGCTCATTTGAGACCTCGTGATACTAATTAGTGATAAAATAAAGGGGTCAGATTCTCTTCGAAAGTAT</canonical_amplicon>
		<polymorphic_amplicon>AAGACGATGTCTTTGTATGTGACACAATTTGAAGAAGTGCACACTTGGGCACCAGAAGTGTCCCCAGAGACATTCTTCTTTTCTTTATTCTTGTAAGGAGTAGACTCTTAKTTTTCTGTCTCTCCTTTCACATAAATTGCATTATACAAAAAGACACGAAAAAATGCAAACGGAGCACATGGGGCTCATTTGAGACCTCGTGATACTAATTAGTGATAAAATAAAGGGGTCAGATTCTCTTCGAAAGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13575</snp_id>
        <super_contig>c007700673.Contig4</super_contig>
        <contig_pos>13837</contig_pos>
        <strand>+</strand>
        <context>CAAGAAAATT[C/T]GATAGAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAGGTGGCGTAGTACTAGAACAGGTACGGTAGATTATGTCAAGAAAATT</left_flank>
        <right_flank>GATAGAAATTTTAATTTTTGCACTGTAGAACATCAAAAAAGCAATCTGCT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGCAGTATGGCGGCGTCGACCGGAAAGGAAAAAGGAAACTGAGGACTTGGGCAAGAAAAAAGAAAGAGAGCGACTGGGCCAAGTTTTGTTAGAGTCAATTTGGATGGACCAGACGGATTAGGAAGGAGGCTGGGTGGATAGAAAAAATCACTTAATTGAAACGGAAAACTCTTGAATATTCTGATCAGCTTTTTAATAGAGATCTACTATGAAAATTTGTTTAAGGCACCTTGAGAAAACTTATTGTTAACAGTTCTTTCGAAAACGTTTTGAACACTAATCGAACCCTATACTTGAATTTGAGCTTAATTATATTACTTCCTGTGAGAGATATCAAAATTTCGTCAACTGATAGAAGATTTGTCATAATATTGTCAATATTTTATCAGTTGACAACTTTCTGATATTTCTCATAGGAACCGATATAATTGAGCTCAAAATGTGAGTCTAAGGTGGCGTAGTACTAGAACAGGTACGGTAGATTATGTCAAGAAAATTTGATAGAAATTTTAATTTTTGCACTGTAGAACATCAAAAAAGCAATCTGCTAACAATCAAAAATGGCTAACGGGAAATTCGAAAATCCTAGAACCCATTTTATTCTCCTAAACTCTTCTCTATCTCGAATCTAGGCTCCCAAAAACAACAAAAAAAACTATCTCTCGTGACATTTTTTCGCCAGTATCGCTTCTAGCCGAAAAGGCCCCATCTAATTTTCTTTATTCACTTCTTTTTCTCTTTTTTTCGTCTTTTCTTGGTGTCTCTAAACAACAAAAAACGAGTCGGACGGAGCCTCATCTGCTTTGAATATATCCAGAGTCAGTTCCATCACCGACACTTCTTTTTTTGCTCCAGAAAACAGAAAAAACGGCTTGGGGTTTTTTGGGAGAGAGGCGGAGGGAGTGGTTTTGGAATTTTGATTGGGGATTCGAAAAAAAAGAAGGGTTCTGATCTCCAGAGTGAAACAACGCCACCGGAAATACCGTACACCCTGCAATG</canonical>
            <polymorphic>GGGCAGTATGGCGGCGTCGACCGGAAAGGAAAAAGGAAACTGAGGACTTGGGCAAGAAAAAAGAAAGAGAGCGACTGGGCCAAGTTTTGTTAGAGTCAATTTGGATGGACCAGACGGATTAGGAAGGAGGCTGGGTGGATAGAAAAAATCACTTAATTGAAACGGAAAACTCTTGAATATTCTGATCAGCTTTTTAATAGAGATCTACTATGAAAATTTGTTTAAGGCACCTTGAGAAAACTTATTGTTAACAGTTCTTTCGAAAACGTTTTGAACACTAATCGAACCCTATACTTGAATTTGAGCTTAATTATATTACTTCCTGTGAGAGATATCAAAATTTCGTCAACTGATAGAAGATTTGTCATAATATTGTCAATATTTTATCAGTTGACAACTTTCTGATATTTCTCATAGGAACCGATATAATTGAGCTCAAAATGTGAGTCTAAGGTGGCGTAGTACTAGAACAGGTACGGTAGATTATGTCAAGAAAATTYGATAGAAATTTTAATTTTTGCACTGTAGAACATCAAAAAAGCAATCTGCTAACAATCAAAAATGGCTAACGGGAAATTCGAAAATCCTAGAACCCATTTTATTCTCCTAAACTCTTCTCTATCTCGAATCTAGGCTCCCAAAAACAACAAAAAAAACTATCTCTCGTGACATTTTTTCGCCAGTATCGCTTCTAGCCGAAAAGGCCCCATCTAATTTTCTTTATTCACTTCTTTTTCTCTTTTTTTCGTCTTTTCTTGGTGTCTCTAAACAACAAAAAACGAGTCGGACGGAGCCTCATCTGCTTTGAATATATCCAGAGTCAGTTCCATCACCGACACTTCTTTTTTTGCTCCAGAAAACAGAAAAAACGGCTTGGGGTTTTTTGGGAGAGAGGCGGAGGGAGTGGTTTTGGAATTTTGATTGGGGATTCGAAAAAAAAGAAGGGTTCTGATCTCCAGAGTGAAACAACGCCACCGGAAATACCGTACACCCTGCAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>339 214 157 87 83 68 41 11</canonical_bands>
                <polymorphic_bands>339 214 168 87 83 68 41</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGAGTCTAAGGTGGCGTAGTA</pcr_primer_p1>
		<pcr_primer_p2>AGCCTAGATTCGAGATAGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>194</pcr_amplicon_size>
		<canonical_amplicon>GTGAGTCTAAGGTGGCGTAGTACTAGAACAGGTACGGTAGATTATGTCAAGAAAATTTGATAGAAATTTTAATTTTTGCACTGTAGAACATCAAAAAAGCAATCTGCTAACAATCAAAAATGGCTAACGGGAAATTCGAAAATCCTAGAACCCATTTTATTCTCCTAAACTCTTCTCTATCTCGAATCTAGGCT</canonical_amplicon>
		<polymorphic_amplicon>GTGAGTCTAAGGTGGCGTAGTACTAGAACAGGTACGGTAGATTATGTCAAGAAAATTYGATAGAAATTTTAATTTTTGCACTGTAGAACATCAAAAAAGCAATCTGCTAACAATCAAAAATGGCTAACGGGAAATTCGAAAATCCTAGAACCCATTTTATTCTCCTAAACTCTTCTCTATCTCGAATCTAGGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13576</snp_id>
        <super_contig>c007700673.Contig4</super_contig>
        <contig_pos>17512</contig_pos>
        <strand>+</strand>
        <context>AAAATCAAYG[A/C]CTTAATCAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGGAAAAAATACTAAAATGTTTTGAGCTTGAATTTTTCTAAAAATCAACG</left_flank>
        <right_flank>CTTAATCAATGCGCAGTACTTAAAAAGTGAAAAATATTTACAGAGAATTT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTTCTAAAACTCGCTCTACTGATAAAATGATTTCAGTAATATCCCGAGTGTATGTGTATCCATCTCTCTGTACACACATACATGAAACAGTGTAATGTGAGCTAATTTCGGCAAAGTAGAGGAAGACAAATAGAGGGAATCGGGAAGCGTACAGAGAGGGAGAGAAAGTGGTTTTGAAATGATGAATCAATTCAATGTTTCTAGAAGAAAGGGGAGGGGGACATGTTTGGAAATTTGACAAGGTGAATGTTCCGTTAGGTATGAAAAAAGGGGATTTTGAGAAAAAAGGATTTGAAATTTATGGGCACAAAATTGAGGTTTTATCATCGCAATCATTGTCCGAAGGCTTATTATGAGGAAGTTGAAACCGAAATTTTTCAAAAAGGTCAGGATGTCTGTGGACTTGACGTTTCTAGGATTCTAAGAATAGCCGTTCTGTTTAAAACTGGAAAAAATACTAAAATGTTTTGAGCTTGAATTTTTCTAAAAATCAACGACTTAATCAATGCGCAGTACTTAAAAAGTGAAAAATATTTACAGAGAATTTCAACTAGATTTCAGAAATCCTAAACCAAATCATCGTAAAACCCATCCTTAGAAAGAACCCTTCAATAAAAGAGCTCCTCTGATAGAAGGGCCGGCCCTTTCAGTACAGGTTTTTCAGTAAGTTTTAAACTTTTTTTGCTTTTTCAAAGAATAACTATGAACGAATTCTTAGCTTTCTCAAACGGTCTAACTAATCAAATGATCCGAATAATCCAAGTCTCATTAAACGCAGTCCAAAAGTAGAACAAAAACGCGCCGAAGTCACACCAGCCGGCTGTGAAGCGCCAGATGCATGGACAGGCTGGTATTTTTTTAAACTACAGTCCAAATTTAATTAAACACAGTCCACAATAAAAACAGAAGAAATATAGAGTCCAGAATAATAGCGAATAATAGCACAGTAGTAACAAAAAGTAAATCGAGCAAATCCACTGGGGAAAAATTGAAACAA</canonical>
            <polymorphic>ACTTTTCTAAAACTCGCTCTACTGATAAAATGATTTCAGTAATATCCCGAGTGTATGTGTATCCATCTCTCTGTACACACATACATGAAACAGTGTAATGTGAGCTAATTTCGGCAAAGTAGAGGAAGACAAATAGAGGGAATCGGGAAGCGTACAGAGAGGGAGAGAAAGTGGTTTTGAAATGATGAATCAATTCAATGTTTCTAGAAGAAAGGGGAGGGGGACATGTTTGGAAATTTGACAAGGTGAATGTTCCGTTAGGTATGAAAAAAGGGGATTTTGAGAAAAAAGGATTTGAAATTTATGGGCACAAAATTGAGGTTTTATCATCGCAATCATTGTCCGAAGGCTTATTATGAGGAAGTTGAAACCGAAATTTTTCAAAAAGGTCAGGATGTCTGTGGACTTGACGTTTCTAGGATTCTAAGAATAGCCGTTCTGTTTAAAACTGGAAAAAATACTAAAATGTTTTGAGCTTGAATTTTTCTAAAAATCAACGMCTTAATCAATGCGCAGTACTTAAAAAGTGAAAAATATTTACAGAGAATTTCAACTAGATTTCAGAAATCCTAAACCAAATCATCGTAAAACCCATCCTTAGAAAGAACCCTTCAATAAAAGAGCTCCTCTGATAGAAGGGCCGGCCCTTTCAGTACAGGTTTTTCAGTAAGTTTTAAACTTTTTTTGCTTTTTCAAAGAATAACTATGAACGAATTCTTAGCTTTCTCAAACGGTCTAACTAATCAAATGATCCGAATAATCCAAGTCTCATTAAACGCAGTCCAAAAGTAGAACAAAAACGCGCCGAAGTCACACCAGCCGGCTGTGAAGCGCCAGATGCATGGACAGGCTGGTATTTTTTTAAACTACAGTCCAAATTTAATTAAACACAGTCCACAATAAAAACAGAAGAAATATAGAGTCCAGAATAATAGCGAATAATAGCACAGTAGTAACAAAAAGTAAATCGAGCAAATCCACTGGGGAAAAATTGAAACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAAGAATAGCCGTTCTGTTTA</pcr_primer_p1>
		<pcr_primer_p2>CTTACTGAAAAACCTGTACTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTAAGAATAGCCGTTCTGTTTAAAACTGGAAAAAATACTAAAATGTTTTGAGCTTGAATTTTTCTAAAAATCAACGACTTAATCAATGCGCAGTACTTAAAAAGTGAAAAATATTTACAGAGAATTTCAACTAGATTTCAGAAATCCTAAACCAAATCATCGTAAAACCCATCCTTAGAAAGAACCCTTCAATAAAAGAGCTCCTCTGATAGAAGGGCCGGCCCTTTCAGTACAGGTTTTTCAGTAAG</canonical_amplicon>
		<polymorphic_amplicon>TCTAAGAATAGCCGTTCTGTTTAAAACTGGAAAAAATACTAAAATGTTTTGAGCTTGAATTTTTCTAAAAATCAACGMCTTAATCAATGCGCAGTACTTAAAAAGTGAAAAATATTTACAGAGAATTTCAACTAGATTTCAGAAATCCTAAACCAAATCATCGTAAAACCCATCCTTAGAAAGAACCCTTCAATAAAAGAGCTCCTCTGATAGAAGGGCCGGCCCTTTCAGTACAGGTTTTTCAGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13577</snp_id>
        <super_contig>c007700673.Contig4</super_contig>
        <contig_pos>17510</contig_pos>
        <strand>+</strand>
        <context>TAAAAATCAA[C/T]GMCTTAATCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTGGAAAAAATACTAAAATGTTTTGAGCTTGAATTTTTCTAAAAATCAA</left_flank>
        <right_flank>GACTTAATCAATGCGCAGTACTTAAAAAGTGAAAAATATTTACAGAGAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACTTTTCTAAAACTCGCTCTACTGATAAAATGATTTCAGTAATATCCCGAGTGTATGTGTATCCATCTCTCTGTACACACATACATGAAACAGTGTAATGTGAGCTAATTTCGGCAAAGTAGAGGAAGACAAATAGAGGGAATCGGGAAGCGTACAGAGAGGGAGAGAAAGTGGTTTTGAAATGATGAATCAATTCAATGTTTCTAGAAGAAAGGGGAGGGGGACATGTTTGGAAATTTGACAAGGTGAATGTTCCGTTAGGTATGAAAAAAGGGGATTTTGAGAAAAAAGGATTTGAAATTTATGGGCACAAAATTGAGGTTTTATCATCGCAATCATTGTCCGAAGGCTTATTATGAGGAAGTTGAAACCGAAATTTTTCAAAAAGGTCAGGATGTCTGTGGACTTGACGTTTCTAGGATTCTAAGAATAGCCGTTCTGTTTAAAACTGGAAAAAATACTAAAATGTTTTGAGCTTGAATTTTTCTAAAAATCAACGACTTAATCAATGCGCAGTACTTAAAAAGTGAAAAATATTTACAGAGAATTTCAACTAGATTTCAGAAATCCTAAACCAAATCATCGTAAAACCCATCCTTAGAAAGAACCCTTCAATAAAAGAGCTCCTCTGATAGAAGGGCCGGCCCTTTCAGTACAGGTTTTTCAGTAAGTTTTAAACTTTTTTTGCTTTTTCAAAGAATAACTATGAACGAATTCTTAGCTTTCTCAAACGGTCTAACTAATCAAATGATCCGAATAATCCAAGTCTCATTAAACGCAGTCCAAAAGTAGAACAAAAACGCGCCGAAGTCACACCAGCCGGCTGTGAAGCGCCAGATGCATGGACAGGCTGGTATTTTTTTAAACTACAGTCCAAATTTAATTAAACACAGTCCACAATAAAAACAGAAGAAATATAGAGTCCAGAATAATAGCGAATAATAGCACAGTAGTAACAAAAAGTAAATCGAGCAAATCCACTGGGGAAAAATTGAAAC</canonical>
            <polymorphic>CGACTTTTCTAAAACTCGCTCTACTGATAAAATGATTTCAGTAATATCCCGAGTGTATGTGTATCCATCTCTCTGTACACACATACATGAAACAGTGTAATGTGAGCTAATTTCGGCAAAGTAGAGGAAGACAAATAGAGGGAATCGGGAAGCGTACAGAGAGGGAGAGAAAGTGGTTTTGAAATGATGAATCAATTCAATGTTTCTAGAAGAAAGGGGAGGGGGACATGTTTGGAAATTTGACAAGGTGAATGTTCCGTTAGGTATGAAAAAAGGGGATTTTGAGAAAAAAGGATTTGAAATTTATGGGCACAAAATTGAGGTTTTATCATCGCAATCATTGTCCGAAGGCTTATTATGAGGAAGTTGAAACCGAAATTTTTCAAAAAGGTCAGGATGTCTGTGGACTTGACGTTTCTAGGATTCTAAGAATAGCCGTTCTGTTTAAAACTGGAAAAAATACTAAAATGTTTTGAGCTTGAATTTTTCTAAAAATCAAYGACTTAATCAATGCGCAGTACTTAAAAAGTGAAAAATATTTACAGAGAATTTCAACTAGATTTCAGAAATCCTAAACCAAATCATCGTAAAACCCATCCTTAGAAAGAACCCTTCAATAAAAGAGCTCCTCTGATAGAAGGGCCGGCCCTTTCAGTACAGGTTTTTCAGTAAGTTTTAAACTTTTTTTGCTTTTTCAAAGAATAACTATGAACGAATTCTTAGCTTTCTCAAACGGTCTAACTAATCAAATGATCCGAATAATCCAAGTCTCATTAAACGCAGTCCAAAAGTAGAACAAAAACGCGCCGAAGTCACACCAGCCGGCTGTGAAGCGCCAGATGCATGGACAGGCTGGTATTTTTTTAAACTACAGTCCAAATTTAATTAAACACAGTCCACAATAAAAACAGAAGAAATATAGAGTCCAGAATAATAGCGAATAATAGCACAGTAGTAACAAAAAGTAAATCGAGCAAATCCACTGGGGAAAAATTGAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAAGAATAGCCGTTCTGTTTA</pcr_primer_p1>
		<pcr_primer_p2>CTTACTGAAAAACCTGTACTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTAAGAATAGCCGTTCTGTTTAAAACTGGAAAAAATACTAAAATGTTTTGAGCTTGAATTTTTCTAAAAATCAACGACTTAATCAATGCGCAGTACTTAAAAAGTGAAAAATATTTACAGAGAATTTCAACTAGATTTCAGAAATCCTAAACCAAATCATCGTAAAACCCATCCTTAGAAAGAACCCTTCAATAAAAGAGCTCCTCTGATAGAAGGGCCGGCCCTTTCAGTACAGGTTTTTCAGTAAG</canonical_amplicon>
		<polymorphic_amplicon>TCTAAGAATAGCCGTTCTGTTTAAAACTGGAAAAAATACTAAAATGTTTTGAGCTTGAATTTTTCTAAAAATCAAYGACTTAATCAATGCGCAGTACTTAAAAAGTGAAAAATATTTACAGAGAATTTCAACTAGATTTCAGAAATCCTAAACCAAATCATCGTAAAACCCATCCTTAGAAAGAACCCTTCAATAAAAGAGCTCCTCTGATAGAAGGGCCGGCCCTTTCAGTACAGGTTTTTCAGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13578</snp_id>
        <super_contig>c007700673.Contig4</super_contig>
        <contig_pos>17480</contig_pos>
        <strand>+</strand>
        <context>ATACTAAAAT[G/T]TTTTGAGCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGGATTCTAAGAATAGCCGTTCTGTTTAAAACTGGAAAAAATACTAAAAT</left_flank>
        <right_flank>TTTTGAGCTTGAATTTTTCTAAAAATCAACGACTTAATCAATGCGCAGTA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTCTTTCACACTCAAAAAAAATGTTTTTCGACTTTTCTAAAACTCGCTCTACTGATAAAATGATTTCAGTAATATCCCGAGTGTATGTGTATCCATCTCTCTGTACACACATACATGAAACAGTGTAATGTGAGCTAATTTCGGCAAAGTAGAGGAAGACAAATAGAGGGAATCGGGAAGCGTACAGAGAGGGAGAGAAAGTGGTTTTGAAATGATGAATCAATTCAATGTTTCTAGAAGAAAGGGGAGGGGGACATGTTTGGAAATTTGACAAGGTGAATGTTCCGTTAGGTATGAAAAAAGGGGATTTTGAGAAAAAAGGATTTGAAATTTATGGGCACAAAATTGAGGTTTTATCATCGCAATCATTGTCCGAAGGCTTATTATGAGGAAGTTGAAACCGAAATTTTTCAAAAAGGTCAGGATGTCTGTGGACTTGACGTTTCTAGGATTCTAAGAATAGCCGTTCTGTTTAAAACTGGAAAAAATACTAAAATGTTTTGAGCTTGAATTTTTCTAAAAATCAACGACTTAATCAATGCGCAGTACTTAAAAAGTGAAAAATATTTACAGAGAATTTCAACTAGATTTCAGAAATCCTAAACCAAATCATCGTAAAACCCATCCTTAGAAAGAACCCTTCAATAAAAGAGCTCCTCTGATAGAAGGGCCGGCCCTTTCAGTACAGGTTTTTCAGTAAGTTTTAAACTTTTTTTGCTTTTTCAAAGAATAACTATGAACGAATTCTTAGCTTTCTCAAACGGTCTAACTAATCAAATGATCCGAATAATCCAAGTCTCATTAAACGCAGTCCAAAAGTAGAACAAAAACGCGCCGAAGTCACACCAGCCGGCTGTGAAGCGCCAGATGCATGGACAGGCTGGTATTTTTTTAAACTACAGTCCAAATTTAATTAAACACAGTCCACAATAAAAACAGAAGAAATATAGAGTCCAGAATAATAGCGAATAATAGCACAGTAGTAACAAAAAGTAAAT</canonical>
            <polymorphic>CATTCTTTCACACTCAAAAAAAATGTTTTTCGACTTTTCTAAAACTCGCTCTACTGATAAAATGATTTCAGTAATATCCCGAGTGTATGTGTATCCATCTCTCTGTACACACATACATGAAACAGTGTAATGTGAGCTAATTTCGGCAAAGTAGAGGAAGACAAATAGAGGGAATCGGGAAGCGTACAGAGAGGGAGAGAAAGTGGTTTTGAAATGATGAATCAATTCAATGTTTCTAGAAGAAAGGGGAGGGGGACATGTTTGGAAATTTGACAAGGTGAATGTTCCGTTAGGTATGAAAAAAGGGGATTTTGAGAAAAAAGGATTTGAAATTTATGGGCACAAAATTGAGGTTTTATCATCGCAATCATTGTCCGAAGGCTTATTATGAGGAAGTTGAAACCGAAATTTTTCAAAAAGGTCAGGATGTCTGTGGACTTGACGTTTCTAGGATTCTAAGAATAGCCGTTCTGTTTAAAACTGGAAAAAATACTAAAATKTTTTGAGCTTGAATTTTTCTAAAAATCAACGACTTAATCAATGCGCAGTACTTAAAAAGTGAAAAATATTTACAGAGAATTTCAACTAGATTTCAGAAATCCTAAACCAAATCATCGTAAAACCCATCCTTAGAAAGAACCCTTCAATAAAAGAGCTCCTCTGATAGAAGGGCCGGCCCTTTCAGTACAGGTTTTTCAGTAAGTTTTAAACTTTTTTTGCTTTTTCAAAGAATAACTATGAACGAATTCTTAGCTTTCTCAAACGGTCTAACTAATCAAATGATCCGAATAATCCAAGTCTCATTAAACGCAGTCCAAAAGTAGAACAAAAACGCGCCGAAGTCACACCAGCCGGCTGTGAAGCGCCAGATGCATGGACAGGCTGGTATTTTTTTAAACTACAGTCCAAATTTAATTAAACACAGTCCACAATAAAAACAGAAGAAATATAGAGTCCAGAATAATAGCGAATAATAGCACAGTAGTAACAAAAAGTAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCTTATTATGAGGAAGTTGAA</pcr_primer_p1>
		<pcr_primer_p2>GGTTTTACGATGATTTGGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GGCTTATTATGAGGAAGTTGAAACCGAAATTTTTCAAAAAGGTCAGGATGTCTGTGGACTTGACGTTTCTAGGATTCTAAGAATAGCCGTTCTGTTTAAAACTGGAAAAAATACTAAAATGTTTTGAGCTTGAATTTTTCTAAAAATCAACGACTTAATCAATGCGCAGTACTTAAAAAGTGAAAAATATTTACAGAGAATTTCAACTAGATTTCAGAAATCCTAAACCAAATCATCGTAAAACC</canonical_amplicon>
		<polymorphic_amplicon>GGCTTATTATGAGGAAGTTGAAACCGAAATTTTTCAAAAAGGTCAGGATGTCTGTGGACTTGACGTTTCTAGGATTCTAAGAATAGCCGTTCTGTTTAAAACTGGAAAAAATACTAAAATKTTTTGAGCTTGAATTTTTCTAAAAATCAACGACTTAATCAATGCGCAGTACTTAAAAAGTGAAAAATATTTACAGAGAATTTCAACTAGATTTCAGAAATCCTAAACCAAATCATCGTAAAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13579</snp_id>
        <super_contig>c007700673.Contig4</super_contig>
        <contig_pos>17343</contig_pos>
        <strand>+</strand>
        <context>GTTTTATCAT[C/T]GCAATCATTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAGAAAAAAGGATTTGAAATTTATGGGCACAAAATTGAGGTTTTATCAT</left_flank>
        <right_flank>GCAATCATTGTCCGAAGGCTTATTATGAGGAAGTTGAAACCGAAATTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTAACAAAAATGAGACAAATTCAGTGGAAGCGGATAGGGGAGGAGACACGGATATGTAGACTACTTTTTGATTTATTTCTTCCCCCATACAAAATGCTTCCGACTTTGCTTCCCCACTTTTTTGGATGATAGCCTTCATTCTTTCACACTCAAAAAAAATGTTTTTCGACTTTTCTAAAACTCGCTCTACTGATAAAATGATTTCAGTAATATCCCGAGTGTATGTGTATCCATCTCTCTGTACACACATACATGAAACAGTGTAATGTGAGCTAATTTCGGCAAAGTAGAGGAAGACAAATAGAGGGAATCGGGAAGCGTACAGAGAGGGAGAGAAAGTGGTTTTGAAATGATGAATCAATTCAATGTTTCTAGAAGAAAGGGGAGGGGGACATGTTTGGAAATTTGACAAGGTGAATGTTCCGTTAGGTATGAAAAAAGGGGATTTTGAGAAAAAAGGATTTGAAATTTATGGGCACAAAATTGAGGTTTTATCATCGCAATCATTGTCCGAAGGCTTATTATGAGGAAGTTGAAACCGAAATTTTTCAAAAAGGTCAGGATGTCTGTGGACTTGACGTTTCTAGGATTCTAAGAATAGCCGTTCTGTTTAAAACTGGAAAAAATACTAAAATGTTTTGAGCTTGAATTTTTCTAAAAATCAACGACTTAATCAATGCGCAGTACTTAAAAAGTGAAAAATATTTACAGAGAATTTCAACTAGATTTCAGAAATCCTAAACCAAATCATCGTAAAACCCATCCTTAGAAAGAACCCTTCAATAAAAGAGCTCCTCTGATAGAAGGGCCGGCCCTTTCAGTACAGGTTTTTCAGTAAGTTTTAAACTTTTTTTGCTTTTTCAAAGAATAACTATGAACGAATTCTTAGCTTTCTCAAACGGTCTAACTAATCAAATGATCCGAATAATCCAAGTCTCATTAAACGCAGTCCAAAAGTAGAACAAAAACGCGCCGAAGTCACACCAGCCGGCTGTGAAG</canonical>
            <polymorphic>CCTAACAAAAATGAGACAAATTCAGTGGAAGCGGATAGGGGAGGAGACACGGATATGTAGACTACTTTTTGATTTATTTCTTCCCCCATACAAAATGCTTCCGACTTTGCTTCCCCACTTTTTTGGATGATAGCCTTCATTCTTTCACACTCAAAAAAAATGTTTTTCGACTTTTCTAAAACTCGCTCTACTGATAAAATGATTTCAGTAATATCCCGAGTGTATGTGTATCCATCTCTCTGTACACACATACATGAAACAGTGTAATGTGAGCTAATTTCGGCAAAGTAGAGGAAGACAAATAGAGGGAATCGGGAAGCGTACAGAGAGGGAGAGAAAGTGGTTTTGAAATGATGAATCAATTCAATGTTTCTAGAAGAAAGGGGAGGGGGACATGTTTGGAAATTTGACAAGGTGAATGTTCCGTTAGGTATGAAAAAAGGGGATTTTGAGAAAAAAGGATTTGAAATTTATGGGCACAAAATTGAGGTTTTATCATYGCAATCATTGTCCGAAGGCTTATTATGAGGAAGTTGAAACCGAAATTTTTCAAAAAGGTCAGGATGTCTGTGGACTTGACGTTTCTAGGATTCTAAGAATAGCCGTTCTGTTTAAAACTGGAAAAAATACTAAAATGTTTTGAGCTTGAATTTTTCTAAAAATCAACGACTTAATCAATGCGCAGTACTTAAAAAGTGAAAAATATTTACAGAGAATTTCAACTAGATTTCAGAAATCCTAAACCAAATCATCGTAAAACCCATCCTTAGAAAGAACCCTTCAATAAAAGAGCTCCTCTGATAGAAGGGCCGGCCCTTTCAGTACAGGTTTTTCAGTAAGTTTTAAACTTTTTTTGCTTTTTCAAAGAATAACTATGAACGAATTCTTAGCTTTCTCAAACGGTCTAACTAATCAAATGATCCGAATAATCCAAGTCTCATTAAACGCAGTCCAAAAGTAGAACAAAAACGCGCCGAAGTCACACCAGCCGGCTGTGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTTCCGTTAGGTATGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTAGAAAAATTCAAGCTCAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATGTTCCGTTAGGTATGAAAAAAGGGGATTTTGAGAAAAAAGGATTTGAAATTTATGGGCACAAAATTGAGGTTTTATCATCGCAATCATTGTCCGAAGGCTTATTATGAGGAAGTTGAAACCGAAATTTTTCAAAAAGGTCAGGATGTCTGTGGACTTGACGTTTCTAGGATTCTAAGAATAGCCGTTCTGTTTAAAACTGGAAAAAATACTAAAATGTTTTGAGCTTGAATTTTTCTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AATGTTCCGTTAGGTATGAAAAAAGGGGATTTTGAGAAAAAAGGATTTGAAATTTATGGGCACAAAATTGAGGTTTTATCATYGCAATCATTGTCCGAAGGCTTATTATGAGGAAGTTGAAACCGAAATTTTTCAAAAAGGTCAGGATGTCTGTGGACTTGACGTTTCTAGGATTCTAAGAATAGCCGTTCTGTTTAAAACTGGAAAAAATACTAAAATGTTTTGAGCTTGAATTTTTCTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13580</snp_id>
        <super_contig>c007700673.Contig4</super_contig>
        <contig_pos>17288</contig_pos>
        <strand>+</strand>
        <context>GAAAAAAGGG[A/G]ATTTTGAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGTTTGGAAATTTGACAAGGTGAATGTTCCGTTAGGTATGAAAAAAGGG</left_flank>
        <right_flank>ATTTTGAGAAAAAAGGATTTGAAATTTATGGGCACAAAATTGAGGTTTTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGGAGGGAAAGAGAGAAAGATAGGTTCGGGTTGAATAACACTTGAGAATCAAACCTAACAAAAATGAGACAAATTCAGTGGAAGCGGATAGGGGAGGAGACACGGATATGTAGACTACTTTTTGATTTATTTCTTCCCCCATACAAAATGCTTCCGACTTTGCTTCCCCACTTTTTTGGATGATAGCCTTCATTCTTTCACACTCAAAAAAAATGTTTTTCGACTTTTCTAAAACTCGCTCTACTGATAAAATGATTTCAGTAATATCCCGAGTGTATGTGTATCCATCTCTCTGTACACACATACATGAAACAGTGTAATGTGAGCTAATTTCGGCAAAGTAGAGGAAGACAAATAGAGGGAATCGGGAAGCGTACAGAGAGGGAGAGAAAGTGGTTTTGAAATGATGAATCAATTCAATGTTTCTAGAAGAAAGGGGAGGGGGACATGTTTGGAAATTTGACAAGGTGAATGTTCCGTTAGGTATGAAAAAAGGGGATTTTGAGAAAAAAGGATTTGAAATTTATGGGCACAAAATTGAGGTTTTATCATCGCAATCATTGTCCGAAGGCTTATTATGAGGAAGTTGAAACCGAAATTTTTCAAAAAGGTCAGGATGTCTGTGGACTTGACGTTTCTAGGATTCTAAGAATAGCCGTTCTGTTTAAAACTGGAAAAAATACTAAAATGTTTTGAGCTTGAATTTTTCTAAAAATCAACGACTTAATCAATGCGCAGTACTTAAAAAGTGAAAAATATTTACAGAGAATTTCAACTAGATTTCAGAAATCCTAAACCAAATCATCGTAAAACCCATCCTTAGAAAGAACCCTTCAATAAAAGAGCTCCTCTGATAGAAGGGCCGGCCCTTTCAGTACAGGTTTTTCAGTAAGTTTTAAACTTTTTTTGCTTTTTCAAAGAATAACTATGAACGAATTCTTAGCTTTCTCAAACGGTCTAACTAATCAAATGATCCGAATAATCCAAGTCTCATTAAA</canonical>
            <polymorphic>GAAGGAGGGAAAGAGAGAAAGATAGGTTCGGGTTGAATAACACTTGAGAATCAAACCTAACAAAAATGAGACAAATTCAGTGGAAGCGGATAGGGGAGGAGACACGGATATGTAGACTACTTTTTGATTTATTTCTTCCCCCATACAAAATGCTTCCGACTTTGCTTCCCCACTTTTTTGGATGATAGCCTTCATTCTTTCACACTCAAAAAAAATGTTTTTCGACTTTTCTAAAACTCGCTCTACTGATAAAATGATTTCAGTAATATCCCGAGTGTATGTGTATCCATCTCTCTGTACACACATACATGAAACAGTGTAATGTGAGCTAATTTCGGCAAAGTAGAGGAAGACAAATAGAGGGAATCGGGAAGCGTACAGAGAGGGAGAGAAAGTGGTTTTGAAATGATGAATCAATTCAATGTTTCTAGAAGAAAGGGGAGGGGGACATGTTTGGAAATTTGACAAGGTGAATGTTCCGTTAGGTATGAAAAAAGGGRATTTTGAGAAAAAAGGATTTGAAATTTATGGGCACAAAATTGAGGTTTTATCATCGCAATCATTGTCCGAAGGCTTATTATGAGGAAGTTGAAACCGAAATTTTTCAAAAAGGTCAGGATGTCTGTGGACTTGACGTTTCTAGGATTCTAAGAATAGCCGTTCTGTTTAAAACTGGAAAAAATACTAAAATGTTTTGAGCTTGAATTTTTCTAAAAATCAACGACTTAATCAATGCGCAGTACTTAAAAAGTGAAAAATATTTACAGAGAATTTCAACTAGATTTCAGAAATCCTAAACCAAATCATCGTAAAACCCATCCTTAGAAAGAACCCTTCAATAAAAGAGCTCCTCTGATAGAAGGGCCGGCCCTTTCAGTACAGGTTTTTCAGTAAGTTTTAAACTTTTTTTGCTTTTTCAAAGAATAACTATGAACGAATTCTTAGCTTTCTCAAACGGTCTAACTAATCAAATGATCCGAATAATCCAAGTCTCATTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAAGACAAATAGAGGGAATC</pcr_primer_p1>
		<pcr_primer_p2>CGGTTTCAACTTCCTCATAATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGGAAGACAAATAGAGGGAATCGGGAAGCGTACAGAGAGGGAGAGAAAGTGGTTTTGAAATGATGAATCAATTCAATGTTTCTAGAAGAAAGGGGAGGGGGACATGTTTGGAAATTTGACAAGGTGAATGTTCCGTTAGGTATGAAAAAAGGGGATTTTGAGAAAAAAGGATTTGAAATTTATGGGCACAAAATTGAGGTTTTATCATCGCAATCATTGTCCGAAGGCTTATTATGAGGAAGTTGAAACCG</canonical_amplicon>
		<polymorphic_amplicon>AGGAAGACAAATAGAGGGAATCGGGAAGCGTACAGAGAGGGAGAGAAAGTGGTTTTGAAATGATGAATCAATTCAATGTTTCTAGAAGAAAGGGGAGGGGGACATGTTTGGAAATTTGACAAGGTGAATGTTCCGTTAGGTATGAAAAAAGGGRATTTTGAGAAAAAAGGATTTGAAATTTATGGGCACAAAATTGAGGTTTTATCATCGCAATCATTGTCCGAAGGCTTATTATGAGGAAGTTGAAACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13581</snp_id>
        <super_contig>c007700673.Contig4</super_contig>
        <contig_pos>17179</contig_pos>
        <strand>+</strand>
        <context>GAGAGGGAGA[A/G]AAAGTGGTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTAGAGGAAGACAAATAGAGGGAATCGGGAAGCGTACAGAGAGGGAGA</left_flank>
        <right_flank>AAAGTGGTTTTGAAATGATGAATCAATTCAATGTTTCTAGAAGAAAGGGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAACATAGACAGATCACCAAACAAATCATTTTGGTATTTAGTTGTTTGTGAGTCACCTTTTCGAAATATGCGCACTACTAAAGTCAAAAGTGTTGACATGAAGAACAAGAAGGAGGGAAAGAGAGAAAGATAGGTTCGGGTTGAATAACACTTGAGAATCAAACCTAACAAAAATGAGACAAATTCAGTGGAAGCGGATAGGGGAGGAGACACGGATATGTAGACTACTTTTTGATTTATTTCTTCCCCCATACAAAATGCTTCCGACTTTGCTTCCCCACTTTTTTGGATGATAGCCTTCATTCTTTCACACTCAAAAAAAATGTTTTTCGACTTTTCTAAAACTCGCTCTACTGATAAAATGATTTCAGTAATATCCCGAGTGTATGTGTATCCATCTCTCTGTACACACATACATGAAACAGTGTAATGTGAGCTAATTTCGGCAAAGTAGAGGAAGACAAATAGAGGGAATCGGGAAGCGTACAGAGAGGGAGAGAAAGTGGTTTTGAAATGATGAATCAATTCAATGTTTCTAGAAGAAAGGGGAGGGGGACATGTTTGGAAATTTGACAAGGTGAATGTTCCGTTAGGTATGAAAAAAGGGGATTTTGAGAAAAAAGGATTTGAAATTTATGGGCACAAAATTGAGGTTTTATCATCGCAATCATTGTCCGAAGGCTTATTATGAGGAAGTTGAAACCGAAATTTTTCAAAAAGGTCAGGATGTCTGTGGACTTGACGTTTCTAGGATTCTAAGAATAGCCGTTCTGTTTAAAACTGGAAAAAATACTAAAATGTTTTGAGCTTGAATTTTTCTAAAAATCAACGACTTAATCAATGCGCAGTACTTAAAAAGTGAAAAATATTTACAGAGAATTTCAACTAGATTTCAGAAATCCTAAACCAAATCATCGTAAAACCCATCCTTAGAAAGAACCCTTCAATAAAAGAGCTCCTCTGATAGAAGGGCCGGCCCTTTCAGTACAGGTTTTTCAG</canonical>
            <polymorphic>CTAACATAGACAGATCACCAAACAAATCATTTTGGTATTTAGTTGTTTGTGAGTCACCTTTTCGAAATATGCGCACTACTAAAGTCAAAAGTGTTGACATGAAGAACAAGAAGGAGGGAAAGAGAGAAAGATAGGTTCGGGTTGAATAACACTTGAGAATCAAACCTAACAAAAATGAGACAAATTCAGTGGAAGCGGATAGGGGAGGAGACACGGATATGTAGACTACTTTTTGATTTATTTCTTCCCCCATACAAAATGCTTCCGACTTTGCTTCCCCACTTTTTTGGATGATAGCCTTCATTCTTTCACACTCAAAAAAAATGTTTTTCGACTTTTCTAAAACTCGCTCTACTGATAAAATGATTTCAGTAATATCCCGAGTGTATGTGTATCCATCTCTCTGTACACACATACATGAAACAGTGTAATGTGAGCTAATTTCGGCAAAGTAGAGGAAGACAAATAGAGGGAATCGGGAAGCGTACAGAGAGGGAGARAAAGTGGTTTTGAAATGATGAATCAATTCAATGTTTCTAGAAGAAAGGGGAGGGGGACATGTTTGGAAATTTGACAAGGTGAATGTTCCGTTAGGTATGAAAAAAGGGGATTTTGAGAAAAAAGGATTTGAAATTTATGGGCACAAAATTGAGGTTTTATCATCGCAATCATTGTCCGAAGGCTTATTATGAGGAAGTTGAAACCGAAATTTTTCAAAAAGGTCAGGATGTCTGTGGACTTGACGTTTCTAGGATTCTAAGAATAGCCGTTCTGTTTAAAACTGGAAAAAATACTAAAATGTTTTGAGCTTGAATTTTTCTAAAAATCAACGACTTAATCAATGCGCAGTACTTAAAAAGTGAAAAATATTTACAGAGAATTTCAACTAGATTTCAGAAATCCTAAACCAAATCATCGTAAAACCCATCCTTAGAAAGAACCCTTCAATAAAAGAGCTCCTCTGATAGAAGGGCCGGCCCTTTCAGTACAGGTTTTTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTCGCTCTACTGATAAAATGA</pcr_primer_p1>
		<pcr_primer_p2>TAACGGAACATTCACCTTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACTCGCTCTACTGATAAAATGATTTCAGTAATATCCCGAGTGTATGTGTATCCATCTCTCTGTACACACATACATGAAACAGTGTAATGTGAGCTAATTTCGGCAAAGTAGAGGAAGACAAATAGAGGGAATCGGGAAGCGTACAGAGAGGGAGAGAAAGTGGTTTTGAAATGATGAATCAATTCAATGTTTCTAGAAGAAAGGGGAGGGGGACATGTTTGGAAATTTGACAAGGTGAATGTTCCGTTA</canonical_amplicon>
		<polymorphic_amplicon>AACTCGCTCTACTGATAAAATGATTTCAGTAATATCCCGAGTGTATGTGTATCCATCTCTCTGTACACACATACATGAAACAGTGTAATGTGAGCTAATTTCGGCAAAGTAGAGGAAGACAAATAGAGGGAATCGGGAAGCGTACAGAGAGGGAGARAAAGTGGTTTTGAAATGATGAATCAATTCAATGTTTCTAGAAGAAAGGGGAGGGGGACATGTTTGGAAATTTGACAAGGTGAATGTTCCGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13582</snp_id>
        <super_contig>c007700673.Contig4</super_contig>
        <contig_pos>38597</contig_pos>
        <strand>+</strand>
        <context>GGATCTCCGC[G/T]CCGCCCGTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCCGAGTCCAACGAAGAAAAAGGAAAGCCCTGGAACTTCCGGATCTCCGC</left_flank>
        <right_flank>CCGCCCGTCGTTGGCTCGAACTGGCTCGCCAGCTTTCAATCAACTTCATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGCTCAACACGCCGACGTCGTTTTCACTACCGAGCTCACCGCGGCACTTTTCAAGAGCTACATTGAAATTGAGGCTCAGCGAGCGTAAGTTGTCGGAAGTGAGCCTAAGCGAATTGTATGAAAATCTCCTAGAACTTTGAAACAAATGAATGCAGTACTTCCTCTGCTCCGTCCGAAAGATGCTGAAATGGAGAGCGCAATGAGTACAGCTCCATCGACAAGTCACAATCAACGAAGACGTGGAACTGAGCAAATGGATAAGCCTCCAAAAGGAAGGCAAGGCTCGATTTCCACCCAACTCCGCCCGTTCAATAGTTTCGAGGAGCCTGATGCGCCAACAAAGAAGTTCGATGATAGCAGCAGTGACGAGGAGAAAAGTAGCAAGAAGGTTTTTCAAATAAAAAGGAGAATATTCGAATGAATTATTTATTTCCAGAGCAGCAAGAAGCCGAGTCCAACGAAGAAAAAGGAAAGCCCTGGAACTTCCGGATCTCCGCTCCGCCCGTCGTTGGCTCGAACTGGCTCGCCAGCTTTCAATCAACTTCATCTTGATGATCACAAACTTCCAAAAACCAGTGAAAAGAAACATTGGTGATGTAAATATCAACCTCTGCAATCAAACTAACAATTGTAAATGTCCTTTTTTCATGTTAATATTCTCGTTTTTTTATCCCAGGGATGTTCGGAACGGAATTCCGAAGCTTTTTTCGAAATTTAAAAAAAATCAAATTTTACAGTAGAAATCCCGTTTTCCAACCACAAAATCGCGGAAAAATGAGTGAAAGTGAGCGAAAAAAAATTCGAAAATGCCTAAAAAATCAAAAGTAATTCCGTTCGATACCCGCAAGGGAATTGTTCGCATGCGCCTTTGACATACTGTAGCTCTTTTTTTGTCCGTTATTGAAGTCTTTTGCTCAATTTTCACCACTTTTCCGCGCTTTTTTGATAAGAAAATCGGATTTTTCGACTTCAAAATTCAAATTTATAAAAATTCCGAA</canonical>
            <polymorphic>ATCGCTCAACACGCCGACGTCGTTTTCACTACCGAGCTCACCGCGGCACTTTTCAAGAGCTACATTGAAATTGAGGCTCAGCGAGCGTAAGTTGTCGGAAGTGAGCCTAAGCGAATTGTATGAAAATCTCCTAGAACTTTGAAACAAATGAATGCAGTACTTCCTCTGCTCCGTCCGAAAGATGCTGAAATGGAGAGCGCAATGAGTACAGCTCCATCGACAAGTCACAATCAACGAAGACGTGGAACTGAGCAAATGGATAAGCCTCCAAAAGGAAGGCAAGGCTCGATTTCCACCCAACTCCGCCCGTTCAATAGTTTCGAGGAGCCTGATGCGCCAACAAAGAAGTTCGATGATAGCAGCAGTGACGAGGAGAAAAGTAGCAAGAAGGTTTTTCAAATAAAAAGGAGAATATTCGAATGAATTATTTATTTCCAGAGCAGCAAGAAGCCGAGTCCAACGAAGAAAAAGGAAAGCCCTGGAACTTCCGGATCTCCGCKCCGCCCGTCGTTGGCTCGAACTGGCTCGCCAGCTTTCAATCAACTTCATCTTGATGATCACAAACTTCCAAAAACCAGTGAAAAGAAACATTGGTGATGTAAATATCAACCTCTGCAATCAAACTAACAATTGTAAATGTCCTTTTTTCATGTTAATATTCTCGTTTTTTTATCCCAGGGATGTTCGGAACGGAATTCCGAAGCTTTTTTCGAAATTTAAAAAAAATCAAATTTTACAGTAGAAATCCCGTTTTCCAACCACAAAATCGCGGAAAAATGAGTGAAAGTGAGCGAAAAAAAATTCGAAAATGCCTAAAAAATCAAAAGTAATTCCGTTCGATACCCGCAAGGGAATTGTTCGCATGCGCCTTTGACATACTGTAGCTCTTTTTTTGTCCGTTATTGAAGTCTTTTGCTCAATTTTCACCACTTTTCCGCGCTTTTTTGATAAGAAAATCGGATTTTTCGACTTCAAAATTCAAATTTATAAAAATTCCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAAAGTAGCAAGAAGGTTTT</pcr_primer_p1>
		<pcr_primer_p2>GATTGCAGAGGTTGATATTTACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAGAAAAGTAGCAAGAAGGTTTTTCAAATAAAAAGGAGAATATTCGAATGAATTATTTATTTCCAGAGCAGCAAGAAGCCGAGTCCAACGAAGAAAAAGGAAAGCCCTGGAACTTCCGGATCTCCGCTCCGCCCGTCGTTGGCTCGAACTGGCTCGCCAGCTTTCAATCAACTTCATCTTGATGATCACAAACTTCCAAAAACCAGTGAAAAGAAACATTGGTGATGTAAATATCAACCTCTGCAATC</canonical_amplicon>
		<polymorphic_amplicon>GAGAAAAGTAGCAAGAAGGTTTTTCAAATAAAAAGGAGAATATTCGAATGAATTATTTATTTCCAGAGCAGCAAGAAGCCGAGTCCAACGAAGAAAAAGGAAAGCCCTGGAACTTCCGGATCTCCGCKCCGCCCGTCGTTGGCTCGAACTGGCTCGCCAGCTTTCAATCAACTTCATCTTGATGATCACAAACTTCCAAAAACCAGTGAAAAGAAACATTGGTGATGTAAATATCAACCTCTGCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13583</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>63751</contig_pos>
        <strand>+</strand>
        <context>GTCGTTGCTT[A/G]GCTTTCCAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATATATTCCACACTTTCAGCAAGAAATTTCTGGAACTGGTCGTTGCTT</left_flank>
        <right_flank>GCTTTCCAATCAGGCGTTTTAGTCGCATTTGATTGTGATACTGAAGCGTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGGAATTTTTCTGAAAATTATGAATTTCCGGGTTTTTGAATTTTCTGGAAATTCAATATGTTGAATTTTAGAACTTCCGAATTTCCAGTATTTGGAAGTTTCTGGAAATTCCAAAATTACAGTTTTTGTACTTTTCGGGAAATTCGAAAATTTTAATTTCGGACTTTTTTGGAAATTCCAATCTCTGTTTTTTGGACTTTTTTGGAAGTTCCAAAATTACGATTTCCAGTTTTTTCTGAAAATTCAAAAAATTCGAATTTTGGTTATTCCGAATTTCCAGTTTTTGGACTTTTTTGGAAGTTCCAAAACCTTTGTATTTGAACTTTTCTGGAAATTCAAAAAGTTGAATTTGAAATTCCGAATTTCATACTTTTGGACTTTACTGGAAATGCATAGTTTGGAATTTCGAAAATTCAAAATCAAAGTTTTCGAAACCTTTTCTCGAAATTATATATTCCACACTTTCAGCAAGAAATTTCTGGAACTGGTCGTTGCTTGGCTTTCCAATCAGGCGTTTTAGTCGCATTTGATTGTGATACTGAAGCGTACGTATTTTGTGAATCTGGAAGAGAATGTGTTGGAAGAAACACGGAATATTCTGGAACATCTAATCGAACATCGGATGGACAAGGATGTCTTATGTGGAATGATCCGGCTGTTTTGTTTCAGAGAGACTCGGATTTCGAGATTTGGAATCACAATTTTTGTAGATTCATAGAACAGGATGGAAGGTAAAGTTTCATTCTATTCAGATAGAAGATAACAATATATTTTCACTTCTAGAAAATCCCCAACCCCTGTCTGTTATTCAAAACCTCATCAACTATCAGAATGCAATATTCCGAATTGTCCTGAAAGTTTGAACGATGCGATTGTCCTGGAAACAGGAGATAGTTGCCCAATCGGCTCATTTTCGTGTGATAACGGATCGAAATGTATCTCCGAGAAGTTTCAATGTGACTATGAAGTGGATTGTAACGACGGGTCAGATGAACAGA</canonical>
            <polymorphic>TTTGGAATTTTTCTGAAAATTATGAATTTCCGGGTTTTTGAATTTTCTGGAAATTCAATATGTTGAATTTTAGAACTTCCGAATTTCCAGTATTTGGAAGTTTCTGGAAATTCCAAAATTACAGTTTTTGTACTTTTCGGGAAATTCGAAAATTTTAATTTCGGACTTTTTTGGAAATTCCAATCTCTGTTTTTTGGACTTTTTTGGAAGTTCCAAAATTACGATTTCCAGTTTTTTCTGAAAATTCAAAAAATTCGAATTTTGGTTATTCCGAATTTCCAGTTTTTGGACTTTTTTGGAAGTTCCAAAACCTTTGTATTTGAACTTTTCTGGAAATTCAAAAAGTTGAATTTGAAATTCCGAATTTCATACTTTTGGACTTTACTGGAAATGCATAGTTTGGAATTTCGAAAATTCAAAATCAAAGTTTTCGAAACCTTTTCTCGAAATTATATATTCCACACTTTCAGCAAGAAATTTCTGGAACTGGTCGTTGCTTRGCTTTCCAATCAGGCGTTTTAGTCGCATTTGATTGTGATACTGAAGCGTACGTATTTTGTGAATCTGGAAGAGAATGTGTTGGAAGAAACACGGAATATTCTGGAACATCTAATCGAACATCGGATGGACAAGGATGTCTTATGTGGAATGATCCGGCTGTTTTGTTTCAGAGAGACTCGGATTTCGAGATTTGGAATCACAATTTTTGTAGATTCATAGAACAGGATGGAAGGTAAAGTTTCATTCTATTCAGATAGAAGATAACAATATATTTTCACTTCTAGAAAATCCCCAACCCCTGTCTGTTATTCAAAACCTCATCAACTATCAGAATGCAATATTCCGAATTGTCCTGAAAGTTTGAACGATGCGATTGTCCTGGAAACAGGAGATAGTTGCCCAATCGGCTCATTTTCGTGTGATAACGGATCGAAATGTATCTCCGAGAAGTTTCAATGTGACTATGAAGTGGATTGTAACGACGGGTCAGATGAACAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>501 251 156 92</canonical_bands>
                <polymorphic_bands>657 251 92</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCTTTGTATTTGAACTTTTCTG</pcr_primer_p1>
		<pcr_primer_p2>AAATACGTACGCTTCAGTATCAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACCTTTGTATTTGAACTTTTCTGGAAATTCAAAAAGTTGAATTTGAAATTCCGAATTTCATACTTTTGGACTTTACTGGAAATGCATAGTTTGGAATTTCGAAAATTCAAAATCAAAGTTTTCGAAACCTTTTCTCGAAATTATATATTCCACACTTTCAGCAAGAAATTTCTGGAACTGGTCGTTGCTTGGCTTTCCAATCAGGCGTTTTAGTCGCATTTGATTGTGATACTGAAGCGTACGTATTT</canonical_amplicon>
		<polymorphic_amplicon>ACCTTTGTATTTGAACTTTTCTGGAAATTCAAAAAGTTGAATTTGAAATTCCGAATTTCATACTTTTGGACTTTACTGGAAATGCATAGTTTGGAATTTCGAAAATTCAAAATCAAAGTTTTCGAAACCTTTTCTCGAAATTATATATTCCACACTTTCAGCAAGAAATTTCTGGAACTGGTCGTTGCTTRGCTTTCCAATCAGGCGTTTTAGTCGCATTTGATTGTGATACTGAAGCGTACGTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13584</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>66232</contig_pos>
        <strand>+</strand>
        <context>GTTTAAGAGA[A/G]CCCAATTGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGGTGGCGGCTCTTCGTCTGCCGACCTGGAATCTCTCATGTTTAAGAGA</left_flank>
        <right_flank>CCCAATTGTACATCAACTATCGTTTCTACGTGTCAACCATCAAGTGAGTC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGTGGATGATGAGGCGGAGGATGTGGATGATGCTGCACGAACAATCACAGGGGGAGTGTGAGCAGTGTGGGAGAAGCGGAGTTTCGAATGTTCCTGGAATTGAAAGTTTTTGATTTTTTTAAATTCTTGCAACTCACTGAATAATCAAGACCTGTGAAAAAGTTGACAATGACATTTGTGTTGAGTCCCTGATAGAATGCAACTTCACCCACAAACTCCTCCTTTTCTCGCGATTCTCGAGTTATAGCCATATTGGGATGCATCTGTAAAAATATCAGAATTCAATTTTCAAAACATCTCCAACTCACCCAATATACATTTTTATAGAGACCCGATTTATATTGTGGAATCACATCCAACCGAATTGTTTTTGGAGCGGGAGTCTCTGCCTCAGTCTTCTGCTGATTCTTCTTCTTCCCGCCTTTCTTCTTCGCTTTATTCCGGAAGACCGGTGGCGGCTCTTCGTCTGCCGACCTGGAATCTCTCATGTTTAAGAGAGCCCAATTGTACATCAACTATCGTTTCTACGTGTCAACCATCAAGTGAGTCTTTAATTGTTATTGTGGTACAAAAAATCTGTCGTTAGTGGCCGAAGGCACTACAACGACAACTACCGTAACCTTACATAGTTTTATTTTCCGGAACAATGACAGGAAATTCGACGAAGGACGAAACCGAGAAAATGAATACTAAAAATAAAAATATTTTTAGGTTACGGTAGTTTTCGCTGTGGGACCTTCTGATTCTTTTTACAAGGATAATATGTCACATACCATCTTGTTGTTAGATGACGATGTCGACGTTCATCAAAATGAATCATCGATTCACCACGTTCTCCCTGTGTGTTTTTTATAATGAAAAATTGCAAAGATGGAAAATTATGGAACCACCGTGTAAACGAGAATTTAAAGTTCACGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAAC</canonical>
            <polymorphic>AGGTGGATGATGAGGCGGAGGATGTGGATGATGCTGCACGAACAATCACAGGGGGAGTGTGAGCAGTGTGGGAGAAGCGGAGTTTCGAATGTTCCTGGAATTGAAAGTTTTTGATTTTTTTAAATTCTTGCAACTCACTGAATAATCAAGACCTGTGAAAAAGTTGACAATGACATTTGTGTTGAGTCCCTGATAGAATGCAACTTCACCCACAAACTCCTCCTTTTCTCGCGATTCTCGAGTTATAGCCATATTGGGATGCATCTGTAAAAATATCAGAATTCAATTTTCAAAACATCTCCAACTCACCCAATATACATTTTTATAGAGACCCGATTTATATTGTGGAATCACATCCAACCGAATTGTTTTTGGAGCGGGAGTCTCTGCCTCAGTCTTCTGCTGATTCTTCTTCTTCCCGCCTTTCTTCTTCGCTTTATTCCGGAAGACCGGTGGCGGCTCTTCGTCTGCCGACCTGGAATCTCTCATGTTTAAGAGARCCCAATTGTACATCAACTATCGTTTCTACGTGTCAACCATCAAGTGAGTCTTTAATTGTTATTGTGGTACAAAAAATCTGTCGTTAGTGGCCGAAGGCACTACAACGACAACTACCGTAACCTTACATAGTTTTATTTTCCGGAACAATGACAGGAAATTCGACGAAGGACGAAACCGAGAAAATGAATACTAAAAATAAAAATATTTTTAGGTTACGGTAGTTTTCGCTGTGGGACCTTCTGATTCTTTTTACAAGGATAATATGTCACATACCATCTTGTTGTTAGATGACGATGTCGACGTTCATCAAAATGAATCATCGATTCACCACGTTCTCCCTGTGTGTTTTTTATAATGAAAAATTGCAAAGATGGAAAATTATGGAACCACCGTGTAAACGAGAATTTAAAGTTCACGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>378 248 211 90 41 32</canonical_bands>
                <polymorphic_bands>378 248 211 131 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATTTTTATAGAGACCCGATTT</pcr_primer_p1>
		<pcr_primer_p2>CAATTAAAGACTCACTTGATGGT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ACATTTTTATAGAGACCCGATTTATATTGTGGAATCACATCCAACCGAATTGTTTTTGGAGCGGGAGTCTCTGCCTCAGTCTTCTGCTGATTCTTCTTCTTCCCGCCTTTCTTCTTCGCTTTATTCCGGAAGACCGGTGGCGGCTCTTCGTCTGCCGACCTGGAATCTCTCATGTTTAAGAGAGCCCAATTGTACATCAACTATCGTTTCTACGTGTCAACCATCAAGTGAGTCTTTAATTG</canonical_amplicon>
		<polymorphic_amplicon>ACATTTTTATAGAGACCCGATTTATATTGTGGAATCACATCCAACCGAATTGTTTTTGGAGCGGGAGTCTCTGCCTCAGTCTTCTGCTGATTCTTCTTCTTCCCGCCTTTCTTCTTCGCTTTATTCCGGAAGACCGGTGGCGGCTCTTCGTCTGCCGACCTGGAATCTCTCATGTTTAAGAGARCCCAATTGTACATCAACTATCGTTTCTACGTGTCAACCATCAAGTGAGTCTTTAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13585</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>66926</contig_pos>
        <strand>+</strand>
        <context>CTGCATGTGG[A/G]GATGGATCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGG</left_flank>
        <right_flank>GATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGATTG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATAAAAATATTTTTAGGTTACGGTAGTTTTCGCTGTGGGACCTTCTGATTCTTTTTACAAGGATAATATGTCACATACCATCTTGTTGTTAGATGACGATGTCGACGTTCATCAAAATGAATCATCGATTCACCACGTTCTCCCTGTGTGTTTTTTATAATGAAAAATTGCAAAGATGGAAAATTATGGAACCACCGTGTAAACGAGAATTTAAAGTTCACGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGGAGATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGATTGTAAATCAGGTGACGATGAGAGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATATTTGGAAGTTCTATTTCGAGCTAAATGGGAGCCACTTTGTGCGGATCATTTGGATGGGAATAGAGCAAATTTGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATTTTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAACAAATATCTCTATTTCCTCTGGATTCGACGTTATCTGTGGTTCTGAATGCATTCTCCGTAGATCATCTTCTTGTACCCGTCTAGCCAGAATCTCATGTATTTCTCAAAATGGACTAGCTTCCGTTTCTCAGTGCGGTCATCGTTATGTCGAAGTCAATGCTCGGGATGCAGCTAGATCTCGGATCGCAAGAGTTGTCGGAGGGTTCGAAACAG</canonical>
            <polymorphic>AAATAAAAATATTTTTAGGTTACGGTAGTTTTCGCTGTGGGACCTTCTGATTCTTTTTACAAGGATAATATGTCACATACCATCTTGTTGTTAGATGACGATGTCGACGTTCATCAAAATGAATCATCGATTCACCACGTTCTCCCTGTGTGTTTTTTATAATGAAAAATTGCAAAGATGGAAAATTATGGAACCACCGTGTAAACGAGAATTTAAAGTTCACGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGGRGATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGATTGTAAATCAGGTGACGATGAGAGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATATTTGGAAGTTCTATTTCGAGCTAAATGGGAGCCACTTTGTGCGGATCATTTGGATGGGAATAGAGCAAATTTGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATTTTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAACAAATATCTCTATTTCCTCTGGATTCGACGTTATCTGTGGTTCTGAATGCATTCTCCGTAGATCATCTTCTTGTACCCGTCTAGCCAGAATCTCATGTATTTCTCAAAATGGACTAGCTTCCGTTTCTCAGTGCGGTCATCGTTATGTCGAAGTCAATGCTCGGGATGCAGCTAGATCTCGGATCGCAAGAGTTGTCGGAGGGTTCGAAACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCGAATCTATTGCTTGTAT</pcr_primer_p1>
		<pcr_primer_p2>TCATCGTCACCTGATTTACA</pcr_primer_p2>
		<pcr_amplicon_size>346</pcr_amplicon_size>
		<canonical_amplicon>CGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGGAGATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGATTGTAAATCAGGTGACGATGA</canonical_amplicon>
		<polymorphic_amplicon>CGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGGRGATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGATTGTAAATCAGGTGACGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13586</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>66995</contig_pos>
        <strand>+</strand>
        <context>GTGACGATGA[A/G]AGTGATTGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCCGTCAACTTTGCGATGGATCTATAGATTGTAAATCAGGTGACGATGA</left_flank>
        <right_flank>AGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCG</right_flank>
        <qual_score>145</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTCACATACCATCTTGTTGTTAGATGACGATGTCGACGTTCATCAAAATGAATCATCGATTCACCACGTTCTCCCTGTGTGTTTTTTATAATGAAAAATTGCAAAGATGGAAAATTATGGAACCACCGTGTAAACGAGAATTTAAAGTTCACGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGGAGATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGATTGTAAATCAGGTGACGATGAGAGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATATTTGGAAGTTCTATTTCGAGCTAAATGGGAGCCACTTTGTGCGGATCATTTGGATGGGAATAGAGCAAATTTGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATTTTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAACAAATATCTCTATTTCCTCTGGATTCGACGTTATCTGTGGTTCTGAATGCATTCTCCGTAGATCATCTTCTTGTACCCGTCTAGCCAGAATCTCATGTATTTCTCAAAATGGACTAGCTTCCGTTTCTCAGTGCGGTCATCGTTATGTCGAAGTCAATGCTCGGGATGCAGCTAGATCTCGGATCGCAAGAGTTGTCGGAGGGTTCGAAACAGTTCCAGGGGCATTTCCATGGACAGCTGCATTAAGAAATAAGGAAGTGGGTTAAAAATTAAGGATAAATG</canonical>
            <polymorphic>ATGTCACATACCATCTTGTTGTTAGATGACGATGTCGACGTTCATCAAAATGAATCATCGATTCACCACGTTCTCCCTGTGTGTTTTTTATAATGAAAAATTGCAAAGATGGAAAATTATGGAACCACCGTGTAAACGAGAATTTAAAGTTCACGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGGAGATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGATTGTAAATCAGGTGACGATGARAGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATATTTGGAAGTTCTATTTCGAGCTAAATGGGAGCCACTTTGTGCGGATCATTTGGATGGGAATAGAGCAAATTTGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATTTTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAACAAATATCTCTATTTCCTCTGGATTCGACGTTATCTGTGGTTCTGAATGCATTCTCCGTAGATCATCTTCTTGTACCCGTCTAGCCAGAATCTCATGTATTTCTCAAAATGGACTAGCTTCCGTTTCTCAGTGCGGTCATCGTTATGTCGAAGTCAATGCTCGGGATGCAGCTAGATCTCGGATCGCAAGAGTTGTCGGAGGGTTCGAAACAGTTCCAGGGGCATTTCCATGGACAGCTGCATTAAGAAATAAGGAAGTGGGTTAAAAATTAAGGATAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCGAATCTATTGCTTGTAT</pcr_primer_p1>
		<pcr_primer_p2>TATCCACGAGTGTCTGATCC</pcr_primer_p2>
		<pcr_amplicon_size>403</pcr_amplicon_size>
		<canonical_amplicon>CGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGGAGATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGATTGTAAATCAGGTGACGATGAGAGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATA</canonical_amplicon>
		<polymorphic_amplicon>CGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGGAGATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGATTGTAAATCAGGTGACGATGARAGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13587</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>67052</contig_pos>
        <strand>+</strand>
        <context>CTCGTGGATA[C/T]TTGGAAGTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATA</left_flank>
        <right_flank>TTGGAAGTTCTATTTCGAGCTAAATGGGAGCCACTTTGTGCGGATCATTT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGATTCACCACGTTCTCCCTGTGTGTTTTTTATAATGAAAAATTGCAAAGATGGAAAATTATGGAACCACCGTGTAAACGAGAATTTAAAGTTCACGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGGAGATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGATTGTAAATCAGGTGACGATGAGAGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATATTTGGAAGTTCTATTTCGAGCTAAATGGGAGCCACTTTGTGCGGATCATTTGGATGGGAATAGAGCAAATTTGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATTTTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAACAAATATCTCTATTTCCTCTGGATTCGACGTTATCTGTGGTTCTGAATGCATTCTCCGTAGATCATCTTCTTGTACCCGTCTAGCCAGAATCTCATGTATTTCTCAAAATGGACTAGCTTCCGTTTCTCAGTGCGGTCATCGTTATGTCGAAGTCAATGCTCGGGATGCAGCTAGATCTCGGATCGCAAGAGTTGTCGGAGGGTTCGAAACAGTTCCAGGGGCATTTCCATGGACAGCTGCATTAAGAAATAAGGAAGTGGGTTAAAAATTAAGGATAAATGATTTGAAGCTTGAAAAGTTTCAGACAAAAGCCCACCATTGTGGAGCATCGATTCTTG</canonical>
            <polymorphic>TCGATTCACCACGTTCTCCCTGTGTGTTTTTTATAATGAAAAATTGCAAAGATGGAAAATTATGGAACCACCGTGTAAACGAGAATTTAAAGTTCACGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGGAGATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGATTGTAAATCAGGTGACGATGAGAGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATAYTTGGAAGTTCTATTTCGAGCTAAATGGGAGCCACTTTGTGCGGATCATTTGGATGGGAATAGAGCAAATTTGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATTTTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAACAAATATCTCTATTTCCTCTGGATTCGACGTTATCTGTGGTTCTGAATGCATTCTCCGTAGATCATCTTCTTGTACCCGTCTAGCCAGAATCTCATGTATTTCTCAAAATGGACTAGCTTCCGTTTCTCAGTGCGGTCATCGTTATGTCGAAGTCAATGCTCGGGATGCAGCTAGATCTCGGATCGCAAGAGTTGTCGGAGGGTTCGAAACAGTTCCAGGGGCATTTCCATGGACAGCTGCATTAAGAAATAAGGAAGTGGGTTAAAAATTAAGGATAAATGATTTGAAGCTTGAAAAGTTTCAGACAAAAGCCCACCATTGTGGAGCATCGATTCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGATTGTAAATCAGGTGACGAT</pcr_primer_p1>
		<pcr_primer_p2>AGATATTTGTTGAGAGAAGAGACC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TAGATTGTAAATCAGGTGACGATGAGAGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATATTTGGAAGTTCTATTTCGAGCTAAATGGGAGCCACTTTGTGCGGATCATTTGGATGGGAATAGAGCAAATTTGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATTTTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAACAAATATCT</canonical_amplicon>
		<polymorphic_amplicon>TAGATTGTAAATCAGGTGACGATGAGAGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATAYTTGGAAGTTCTATTTCGAGCTAAATGGGAGCCACTTTGTGCGGATCATTTGGATGGGAATAGAGCAAATTTGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATTTTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAACAAATATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13588</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>67123</contig_pos>
        <strand>+</strand>
        <context>AGAGCAAATT[G/T]GATATGTAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAAATGGGAGCCACTTTGTGCGGATCATTTGGATGGGAATAGAGCAAATT</left_flank>
        <right_flank>GATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATTTTCAGCTCT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTGTAAACGAGAATTTAAAGTTCACGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGGAGATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGATTGTAAATCAGGTGACGATGAGAGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATATTTGGAAGTTCTATTTCGAGCTAAATGGGAGCCACTTTGTGCGGATCATTTGGATGGGAATAGAGCAAATTTGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATTTTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAACAAATATCTCTATTTCCTCTGGATTCGACGTTATCTGTGGTTCTGAATGCATTCTCCGTAGATCATCTTCTTGTACCCGTCTAGCCAGAATCTCATGTATTTCTCAAAATGGACTAGCTTCCGTTTCTCAGTGCGGTCATCGTTATGTCGAAGTCAATGCTCGGGATGCAGCTAGATCTCGGATCGCAAGAGTTGTCGGAGGGTTCGAAACAGTTCCAGGGGCATTTCCATGGACAGCTGCATTAAGAAATAAGGAAGTGGGTTAAAAATTAAGGATAAATGATTTGAAGCTTGAAAAGTTTCAGACAAAAGCCCACCATTGTGGAGCATCGATTCTTGATCGAACTCATTTGATAACAGCTGCGCATTGCTTTGAGTAAGATTAAGACCAGTTAGCAGTTATATTAACT</canonical>
            <polymorphic>CGTGTAAACGAGAATTTAAAGTTCACGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGGAGATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGATTGTAAATCAGGTGACGATGAGAGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATATTTGGAAGTTCTATTTCGAGCTAAATGGGAGCCACTTTGTGCGGATCATTTGGATGGGAATAGAGCAAATTKGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATTTTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAACAAATATCTCTATTTCCTCTGGATTCGACGTTATCTGTGGTTCTGAATGCATTCTCCGTAGATCATCTTCTTGTACCCGTCTAGCCAGAATCTCATGTATTTCTCAAAATGGACTAGCTTCCGTTTCTCAGTGCGGTCATCGTTATGTCGAAGTCAATGCTCGGGATGCAGCTAGATCTCGGATCGCAAGAGTTGTCGGAGGGTTCGAAACAGTTCCAGGGGCATTTCCATGGACAGCTGCATTAAGAAATAAGGAAGTGGGTTAAAAATTAAGGATAAATGATTTGAAGCTTGAAAAGTTTCAGACAAAAGCCCACCATTGTGGAGCATCGATTCTTGATCGAACTCATTTGATAACAGCTGCGCATTGCTTTGAGTAAGATTAAGACCAGTTAGCAGTTATATTAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>505 483 12</canonical_bands>
                <polymorphic_bands>988 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGATTGTAAATCAGGTGACGAT</pcr_primer_p1>
		<pcr_primer_p2>AGATATTTGTTGAGAGAAGAGACC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TAGATTGTAAATCAGGTGACGATGAGAGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATATTTGGAAGTTCTATTTCGAGCTAAATGGGAGCCACTTTGTGCGGATCATTTGGATGGGAATAGAGCAAATTTGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATTTTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAACAAATATCT</canonical_amplicon>
		<polymorphic_amplicon>TAGATTGTAAATCAGGTGACGATGAGAGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATATTTGGAAGTTCTATTTCGAGCTAAATGGGAGCCACTTTGTGCGGATCATTTGGATGGGAATAGAGCAAATTKGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATTTTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAACAAATATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13589</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>67164</contig_pos>
        <strand>+</strand>
        <context>AAAAGTTGAT[G/T]TTCAGCTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAGCAAATTTGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGAT</left_flank>
        <right_flank>TTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAAC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGGAGATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGATTGTAAATCAGGTGACGATGAGAGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATATTTGGAAGTTCTATTTCGAGCTAAATGGGAGCCACTTTGTGCGGATCATTTGGATGGGAATAGAGCAAATTTGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATTTTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAACAAATATCTCTATTTCCTCTGGATTCGACGTTATCTGTGGTTCTGAATGCATTCTCCGTAGATCATCTTCTTGTACCCGTCTAGCCAGAATCTCATGTATTTCTCAAAATGGACTAGCTTCCGTTTCTCAGTGCGGTCATCGTTATGTCGAAGTCAATGCTCGGGATGCAGCTAGATCTCGGATCGCAAGAGTTGTCGGAGGGTTCGAAACAGTTCCAGGGGCATTTCCATGGACAGCTGCATTAAGAAATAAGGAAGTGGGTTAAAAATTAAGGATAAATGATTTGAAGCTTGAAAAGTTTCAGACAAAAGCCCACCATTGTGGAGCATCGATTCTTGATCGAACTCATTTGATAACAGCTGCGCATTGCTTTGAGTAAGATTAAGACCAGTTAGCAGTTATATTAACTGAATATTTTCAGAGAAGATGAAAGAGTAACCTCTTATGAAG</canonical>
            <polymorphic>GTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGGAGATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGATTGTAAATCAGGTGACGATGAGAGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATATTTGGAAGTTCTATTTCGAGCTAAATGGGAGCCACTTTGTGCGGATCATTTGGATGGGAATAGAGCAAATTTGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATKTTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAACAAATATCTCTATTTCCTCTGGATTCGACGTTATCTGTGGTTCTGAATGCATTCTCCGTAGATCATCTTCTTGTACCCGTCTAGCCAGAATCTCATGTATTTCTCAAAATGGACTAGCTTCCGTTTCTCAGTGCGGTCATCGTTATGTCGAAGTCAATGCTCGGGATGCAGCTAGATCTCGGATCGCAAGAGTTGTCGGAGGGTTCGAAACAGTTCCAGGGGCATTTCCATGGACAGCTGCATTAAGAAATAAGGAAGTGGGTTAAAAATTAAGGATAAATGATTTGAAGCTTGAAAAGTTTCAGACAAAAGCCCACCATTGTGGAGCATCGATTCTTGATCGAACTCATTTGATAACAGCTGCGCATTGCTTTGAGTAAGATTAAGACCAGTTAGCAGTTATATTAACTGAATATTTTCAGAGAAGATGAAAGAGTAACCTCTTATGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGATTGTAAATCAGGTGACGAT</pcr_primer_p1>
		<pcr_primer_p2>AGATATTTGTTGAGAGAAGAGACC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TAGATTGTAAATCAGGTGACGATGAGAGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATATTTGGAAGTTCTATTTCGAGCTAAATGGGAGCCACTTTGTGCGGATCATTTGGATGGGAATAGAGCAAATTTGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATTTTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAACAAATATCT</canonical_amplicon>
		<polymorphic_amplicon>TAGATTGTAAATCAGGTGACGATGAGAGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATATTTGGAAGTTCTATTTCGAGCTAAATGGGAGCCACTTTGTGCGGATCATTTGGATGGGAATAGAGCAAATTTGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATKTTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAACAAATATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13590</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>71279</contig_pos>
        <strand>+</strand>
        <context>TAGCTTGTTT[A/T]ATCGAACAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAGAGGGGATACTCTCCAAGATACATGTTTCTGAAAATCTAGCTTGTTT</left_flank>
        <right_flank>ATCGAACAGTAAATAGTCCGTACCCAGTGTAGTTTGTCTTCAATGAGAGC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCCAGATGCTCAACGGTTTGCTAAAACAGAGAAGACTACTATAATTATTCTACATTCCAGAAATTTCACCCCATAAACAACAAGAGAAAGAGCAGATGCCTCATTCAACTCTCCGCTCGTCTCATTAATCGTATCAATTTTTGCCAACGGATAGGCAGTAGAAGATGCATCTCCATATGCCCAAATACTATCTCCTTCCAACTCCAGAATCTCCGTAAACATTTCTTTTTTTGCCAACTTTGCAGCCAATGTCAATGGAGACAAACTCTGTTTGTTAACTGTCCGAAGACTGGCACCACATTCCAGAGCAAGTTTGAACATTGCCATGTTTTCATGGATCACACACATATGAAGTACTGTATTTCCATTTGTATCCTGTGCGTTTGGATTTGCTTTGAACGCAAGAAGAAGTCGGAACATTTCTGGTTGATTCAGGCAAGCAGCAAATGAGAGGGGATACTCTCCAAGATACATGTTTCTGAAAATCTAGCTTGTTTTATCGAACAGTAAATAGTCCGTACCCAGTGTAGTTTGTCTTCAATGAGAGCTCTACGTATTCATGTTCCAGTGAATCGGTTCTCGATGCTTTCTGATCATCAGCACAGAAGAATGCACCATAGCATCTTGAATTAACATCAGCTCCCAATTTCAAAAACTTGAAAACCAGCTTGCAATCTGTGTTAATAATTGCCTGATGTAGAGGAGACAACCCATAGAAATCCTCGGAAATATGGATGTCATTCAAAAGTTTTGGATAGTACTCCAGAATTTTGTATACAAGAGCATTATGAATATCGGAAGCGTGTAGAAGACAACATCCGATGATCGTCTCTCCCATGGATCCTCTCTCTTCCAATTTCCATGAAATCTCTCTGTATTTACTCTCATTTCGTCCTCCTTTTCCTCCACCATCCAAAAGTTTCAGAGCTTTTTTCAAGTCTCCAACATTTTCTCCCTCTTGATTAAAGTCATCAAGTACATTCGGTCCACTTTTTCCT</canonical>
            <polymorphic>GCTCCAGATGCTCAACGGTTTGCTAAAACAGAGAAGACTACTATAATTATTCTACATTCCAGAAATTTCACCCCATAAACAACAAGAGAAAGAGCAGATGCCTCATTCAACTCTCCGCTCGTCTCATTAATCGTATCAATTTTTGCCAACGGATAGGCAGTAGAAGATGCATCTCCATATGCCCAAATACTATCTCCTTCCAACTCCAGAATCTCCGTAAACATTTCTTTTTTTGCCAACTTTGCAGCCAATGTCAATGGAGACAAACTCTGTTTGTTAACTGTCCGAAGACTGGCACCACATTCCAGAGCAAGTTTGAACATTGCCATGTTTTCATGGATCACACACATATGAAGTACTGTATTTCCATTTGTATCCTGTGCGTTTGGATTTGCTTTGAACGCAAGAAGAAGTCGGAACATTTCTGGTTGATTCAGGCAAGCAGCAAATGAGAGGGGATACTCTCCAAGATACATGTTTCTGAAAATCTAGCTTGTTTWATCGAACAGTAAATAGTCCGTACCCAGTGTAGTTTGTCTTCAATGAGAGCTCTACGTATTCATGTTCCAGTGAATCGGTTCTCGATGCTTTCTGATCATCAGCACAGAAGAATGCACCATAGCATCTTGAATTAACATCAGCTCCCAATTTCAAAAACTTGAAAACCAGCTTGCAATCTGTGTTAATAATTGCCTGATGTAGAGGAGACAACCCATAGAAATCCTCGGAAATATGGATGTCATTCAAAAGTTTTGGATAGTACTCCAGAATTTTGTATACAAGAGCATTATGAATATCGGAAGCGTGTAGAAGACAACATCCGATGATCGTCTCTCCCATGGATCCTCTCTCTTCCAATTTCCATGAAATCTCTCTGTATTTACTCTCATTTCGTCCTCCTTTTCCTCCACCATCCAAAAGTTTCAGAGCTTTTTTCAAGTCTCCAACATTTTCTCCCTCTTGATTAAAGTCATCAAGTACATTCGGTCCACTTTTTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCATGGATCACACACATA</pcr_primer_p1>
		<pcr_primer_p2>CACTGGAACATGAATACGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCATGGATCACACACATATGAAGTACTGTATTTCCATTTGTATCCTGTGCGTTTGGATTTGCTTTGAACGCAAGAAGAAGTCGGAACATTTCTGGTTGATTCAGGCAAGCAGCAAATGAGAGGGGATACTCTCCAAGATACATGTTTCTGAAAATCTAGCTTGTTTTATCGAACAGTAAATAGTCCGTACCCAGTGTAGTTTGTCTTCAATGAGAGCTCTACGTATTCATGTTCCAGTG</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCATGGATCACACACATATGAAGTACTGTATTTCCATTTGTATCCTGTGCGTTTGGATTTGCTTTGAACGCAAGAAGAAGTCGGAACATTTCTGGTTGATTCAGGCAAGCAGCAAATGAGAGGGGATACTCTCCAAGATACATGTTTCTGAAAATCTAGCTTGTTTWATCGAACAGTAAATAGTCCGTACCCAGTGTAGTTTGTCTTCAATGAGAGCTCTACGTATTCATGTTCCAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13591</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>70946</contig_pos>
        <strand>+</strand>
        <context>GCAGTAGAAS[A/T]TGCATCTCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTCGTCTCATTAATCGTATCAATTTTTGCCAACGGATAGGCAGTAGAAG</left_flank>
        <right_flank>TGCATCTCCATATGCCCAAATACTATCTCCTTCCAACTCCAGAATCTCCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCCTATCCCTCAACTCACTCCATTCAACCAATCCAGTCGTAGTATTAATGATTGGCTTCACAATCGTCTGCCCTTCTGCCCCATGTCGTCCGGGAAATGGCTCGGAATATCTATTGATCCATCCTTCTGTGATCATTTCAGTTGAAAATCCAATTGGGCGAAGAGTGAATGCAGTCACAAAGCAAACATAATACAATGTGAATGCAGTGAATGAGACAATCATACTGAAAATATCAAGTTATGGTTATTTTTACCGGCCTAATGGATTACTTTCTCTTGGCAAACGCCTCCCATTTCGCTTCTAGAAGAGTGTCGAGGAGACCATCGAGAAGCTCCAGATGCTCAACGGTTTGCTAAAACAGAGAAGACTACTATAATTATTCTACATTCCAGAAATTTCACCCCATAAACAACAAGAGAAAGAGCAGATGCCTCATTCAACTCTCCGCTCGTCTCATTAATCGTATCAATTTTTGCCAACGGATAGGCAGTAGAAGATGCATCTCCATATGCCCAAATACTATCTCCTTCCAACTCCAGAATCTCCGTAAACATTTCTTTTTTTGCCAACTTTGCAGCCAATGTCAATGGAGACAAACTCTGTTTGTTAACTGTCCGAAGACTGGCACCACATTCCAGAGCAAGTTTGAACATTGCCATGTTTTCATGGATCACACACATATGAAGTACTGTATTTCCATTTGTATCCTGTGCGTTTGGATTTGCTTTGAACGCAAGAAGAAGTCGGAACATTTCTGGTTGATTCAGGCAAGCAGCAAATGAGAGGGGATACTCTCCAAGATACATGTTTCTGAAAATCTAGCTTGTTTTATCGAACAGTAAATAGTCCGTACCCAGTGTAGTTTGTCTTCAATGAGAGCTCTACGTATTCATGTTCCAGTGAATCGGTTCTCGATGCTTTCTGATCATCAGCACAGAAGAATGCACCATAGCATCTTGAATTAACATCAGCTCCCAATTTCAAAAACTTGAAAACC</canonical>
            <polymorphic>AATCCTATCCCTCAACTCACTCCATTCAACCAATCCAGTCGTAGTATTAATGATTGGCTTCACAATCGTCTGCCCTTCTGCCCCATGTCGTCCGGGAAATGGCTCGGAATATCTATTGATCCATCCTTCTGTGATCATTTCAGTTGAAAATCCAATTGGGCGAAGAGTGAATGCAGTCACAAAGCAAACATAATACAATGTGAATGCAGTGAATGAGACAATCATACTGAAAATATCAAGTTATGGTTATTTTTACCGGCCTAATGGATTACTTTCTCTTGGCAAACGCCTCCCATTTCGCTTCTAGAAGAGTGTCGAGGAGACCATCGAGAAGCTCCAGATGCTCAACGGTTTGCTAAAACAGAGAAGACTACTATAATTATTCTACATTCCAGAAATTTCACCCCATAAACAACAAGAGAAAGAGCAGATGCCTCATTCAACTCTCCGCTCGTCTCATTAATCGTATCAATTTTTGCCAACGGATAGGCAGTAGAAGWTGCATCTCCATATGCCCAAATACTATCTCCTTCCAACTCCAGAATCTCCGTAAACATTTCTTTTTTTGCCAACTTTGCAGCCAATGTCAATGGAGACAAACTCTGTTTGTTAACTGTCCGAAGACTGGCACCACATTCCAGAGCAAGTTTGAACATTGCCATGTTTTCATGGATCACACACATATGAAGTACTGTATTTCCATTTGTATCCTGTGCGTTTGGATTTGCTTTGAACGCAAGAAGAAGTCGGAACATTTCTGGTTGATTCAGGCAAGCAGCAAATGAGAGGGGATACTCTCCAAGATACATGTTTCTGAAAATCTAGCTTGTTTTATCGAACAGTAAATAGTCCGTACCCAGTGTAGTTTGTCTTCAATGAGAGCTCTACGTATTCATGTTCCAGTGAATCGGTTCTCGATGCTTTCTGATCATCAGCACAGAAGAATGCACCATAGCATCTTGAATTAACATCAGCTCCCAATTTCAAAAACTTGAAAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATGCAT</site>
                <isoschizomers>
                    <enzyme>BfrBI</enzyme>
                    <enzyme>EcoT22I</enzyme>
                    <enzyme>Mph1103I</enzyme>
                    <enzyme>NsiI</enzyme>
                    <enzyme>Ppu10I</enzyme>
                    <enzyme>Zsp2I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTAGAAGAGTGTCGAGGAGAC</pcr_primer_p1>
		<pcr_primer_p2>TTACGGAGATTCTGGAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTAGAAGAGTGTCGAGGAGACCATCGAGAAGCTCCAGATGCTCAACGGTTTGCTAAAACAGAGAAGACTACTATAATTATTCTACATTCCAGAAATTTCACCCCATAAACAACAAGAGAAAGAGCAGATGCCTCATTCAACTCTCCGCTCGTCTCATTAATCGTATCAATTTTTGCCAACGGATAGGCAGTAGAAGATGCATCTCCATATGCCCAAATACTATCTCCTTCCAACTCCAGAATCTCCGTAA</canonical_amplicon>
		<polymorphic_amplicon>TCTAGAAGAGTGTCGAGGAGACCATCGAGAAGCTCCAGATGCTCAACGGTTTGCTAAAACAGAGAAGACTACTATAATTATTCTACATTCCAGAAATTTCACCCCATAAACAACAAGAGAAAGAGCAGATGCCTCATTCAACTCTCCGCTCGTCTCATTAATCGTATCAATTTTTGCCAACGGATAGGCAGTAGAAGWTGCATCTCCATATGCCCAAATACTATCTCCTTCCAACTCCAGAATCTCCGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13592</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>70945</contig_pos>
        <strand>+</strand>
        <context>GGCAGTAGAA[C/G]WTGCATCTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGCTCGTCTCATTAATCGTATCAATTTTTGCCAACGGATAGGCAGTAGAA</left_flank>
        <right_flank>ATGCATCTCCATATGCCCAAATACTATCTCCTTCCAACTCCAGAATCTCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCCTATCCCTCAACTCACTCCATTCAACCAATCCAGTCGTAGTATTAATGATTGGCTTCACAATCGTCTGCCCTTCTGCCCCATGTCGTCCGGGAAATGGCTCGGAATATCTATTGATCCATCCTTCTGTGATCATTTCAGTTGAAAATCCAATTGGGCGAAGAGTGAATGCAGTCACAAAGCAAACATAATACAATGTGAATGCAGTGAATGAGACAATCATACTGAAAATATCAAGTTATGGTTATTTTTACCGGCCTAATGGATTACTTTCTCTTGGCAAACGCCTCCCATTTCGCTTCTAGAAGAGTGTCGAGGAGACCATCGAGAAGCTCCAGATGCTCAACGGTTTGCTAAAACAGAGAAGACTACTATAATTATTCTACATTCCAGAAATTTCACCCCATAAACAACAAGAGAAAGAGCAGATGCCTCATTCAACTCTCCGCTCGTCTCATTAATCGTATCAATTTTTGCCAACGGATAGGCAGTAGAAGATGCATCTCCATATGCCCAAATACTATCTCCTTCCAACTCCAGAATCTCCGTAAACATTTCTTTTTTTGCCAACTTTGCAGCCAATGTCAATGGAGACAAACTCTGTTTGTTAACTGTCCGAAGACTGGCACCACATTCCAGAGCAAGTTTGAACATTGCCATGTTTTCATGGATCACACACATATGAAGTACTGTATTTCCATTTGTATCCTGTGCGTTTGGATTTGCTTTGAACGCAAGAAGAAGTCGGAACATTTCTGGTTGATTCAGGCAAGCAGCAAATGAGAGGGGATACTCTCCAAGATACATGTTTCTGAAAATCTAGCTTGTTTTATCGAACAGTAAATAGTCCGTACCCAGTGTAGTTTGTCTTCAATGAGAGCTCTACGTATTCATGTTCCAGTGAATCGGTTCTCGATGCTTTCTGATCATCAGCACAGAAGAATGCACCATAGCATCTTGAATTAACATCAGCTCCCAATTTCAAAAACTTGAAAAC</canonical>
            <polymorphic>AAATCCTATCCCTCAACTCACTCCATTCAACCAATCCAGTCGTAGTATTAATGATTGGCTTCACAATCGTCTGCCCTTCTGCCCCATGTCGTCCGGGAAATGGCTCGGAATATCTATTGATCCATCCTTCTGTGATCATTTCAGTTGAAAATCCAATTGGGCGAAGAGTGAATGCAGTCACAAAGCAAACATAATACAATGTGAATGCAGTGAATGAGACAATCATACTGAAAATATCAAGTTATGGTTATTTTTACCGGCCTAATGGATTACTTTCTCTTGGCAAACGCCTCCCATTTCGCTTCTAGAAGAGTGTCGAGGAGACCATCGAGAAGCTCCAGATGCTCAACGGTTTGCTAAAACAGAGAAGACTACTATAATTATTCTACATTCCAGAAATTTCACCCCATAAACAACAAGAGAAAGAGCAGATGCCTCATTCAACTCTCCGCTCGTCTCATTAATCGTATCAATTTTTGCCAACGGATAGGCAGTAGAASATGCATCTCCATATGCCCAAATACTATCTCCTTCCAACTCCAGAATCTCCGTAAACATTTCTTTTTTTGCCAACTTTGCAGCCAATGTCAATGGAGACAAACTCTGTTTGTTAACTGTCCGAAGACTGGCACCACATTCCAGAGCAAGTTTGAACATTGCCATGTTTTCATGGATCACACACATATGAAGTACTGTATTTCCATTTGTATCCTGTGCGTTTGGATTTGCTTTGAACGCAAGAAGAAGTCGGAACATTTCTGGTTGATTCAGGCAAGCAGCAAATGAGAGGGGATACTCTCCAAGATACATGTTTCTGAAAATCTAGCTTGTTTTATCGAACAGTAAATAGTCCGTACCCAGTGTAGTTTGTCTTCAATGAGAGCTCTACGTATTCATGTTCCAGTGAATCGGTTCTCGATGCTTTCTGATCATCAGCACAGAAGAATGCACCATAGCATCTTGAATTAACATCAGCTCCCAATTTCAAAAACTTGAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAGAAGAGTGTCGAGGAGAC</pcr_primer_p1>
		<pcr_primer_p2>TTACGGAGATTCTGGAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTAGAAGAGTGTCGAGGAGACCATCGAGAAGCTCCAGATGCTCAACGGTTTGCTAAAACAGAGAAGACTACTATAATTATTCTACATTCCAGAAATTTCACCCCATAAACAACAAGAGAAAGAGCAGATGCCTCATTCAACTCTCCGCTCGTCTCATTAATCGTATCAATTTTTGCCAACGGATAGGCAGTAGAAGATGCATCTCCATATGCCCAAATACTATCTCCTTCCAACTCCAGAATCTCCGTAA</canonical_amplicon>
		<polymorphic_amplicon>TCTAGAAGAGTGTCGAGGAGACCATCGAGAAGCTCCAGATGCTCAACGGTTTGCTAAAACAGAGAAGACTACTATAATTATTCTACATTCCAGAAATTTCACCCCATAAACAACAAGAGAAAGAGCAGATGCCTCATTCAACTCTCCGCTCGTCTCATTAATCGTATCAATTTTTGCCAACGGATAGGCAGTAGAASATGCATCTCCATATGCCCAAATACTATCTCCTTCCAACTCCAGAATCTCCGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13593</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>70834</contig_pos>
        <strand>+</strand>
        <context>AATTATTCTA[A/C]ATTCCAGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAGATGCTCAACGGTTTGCTAAAACAGAGAAGACTACTATAATTATTCTA</left_flank>
        <right_flank>ATTCCAGAAATTTCACCCCATAAACAACAAGAGAAAGAGCAGATGCCTCA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAGCATTGGCAAACGGGATATTGGGATCGAAGTATTGCCGTAGATGACATTGAGTCATTGCCTCGTCTGAAAAAATGTTTCTCTCAAGAAATTCATACTACAAACCCTGAAATCCTATCCCTCAACTCACTCCATTCAACCAATCCAGTCGTAGTATTAATGATTGGCTTCACAATCGTCTGCCCTTCTGCCCCATGTCGTCCGGGAAATGGCTCGGAATATCTATTGATCCATCCTTCTGTGATCATTTCAGTTGAAAATCCAATTGGGCGAAGAGTGAATGCAGTCACAAAGCAAACATAATACAATGTGAATGCAGTGAATGAGACAATCATACTGAAAATATCAAGTTATGGTTATTTTTACCGGCCTAATGGATTACTTTCTCTTGGCAAACGCCTCCCATTTCGCTTCTAGAAGAGTGTCGAGGAGACCATCGAGAAGCTCCAGATGCTCAACGGTTTGCTAAAACAGAGAAGACTACTATAATTATTCTACATTCCAGAAATTTCACCCCATAAACAACAAGAGAAAGAGCAGATGCCTCATTCAACTCTCCGCTCGTCTCATTAATCGTATCAATTTTTGCCAACGGATAGGCAGTAGAAGATGCATCTCCATATGCCCAAATACTATCTCCTTCCAACTCCAGAATCTCCGTAAACATTTCTTTTTTTGCCAACTTTGCAGCCAATGTCAATGGAGACAAACTCTGTTTGTTAACTGTCCGAAGACTGGCACCACATTCCAGAGCAAGTTTGAACATTGCCATGTTTTCATGGATCACACACATATGAAGTACTGTATTTCCATTTGTATCCTGTGCGTTTGGATTTGCTTTGAACGCAAGAAGAAGTCGGAACATTTCTGGTTGATTCAGGCAAGCAGCAAATGAGAGGGGATACTCTCCAAGATACATGTTTCTGAAAATCTAGCTTGTTTTATCGAACAGTAAATAGTCCGTACCCAGTGTAGTTTGTCTTCAATGAGAGCTCTAC</canonical>
            <polymorphic>ATAAGCATTGGCAAACGGGATATTGGGATCGAAGTATTGCCGTAGATGACATTGAGTCATTGCCTCGTCTGAAAAAATGTTTCTCTCAAGAAATTCATACTACAAACCCTGAAATCCTATCCCTCAACTCACTCCATTCAACCAATCCAGTCGTAGTATTAATGATTGGCTTCACAATCGTCTGCCCTTCTGCCCCATGTCGTCCGGGAAATGGCTCGGAATATCTATTGATCCATCCTTCTGTGATCATTTCAGTTGAAAATCCAATTGGGCGAAGAGTGAATGCAGTCACAAAGCAAACATAATACAATGTGAATGCAGTGAATGAGACAATCATACTGAAAATATCAAGTTATGGTTATTTTTACCGGCCTAATGGATTACTTTCTCTTGGCAAACGCCTCCCATTTCGCTTCTAGAAGAGTGTCGAGGAGACCATCGAGAAGCTCCAGATGCTCAACGGTTTGCTAAAACAGAGAAGACTACTATAATTATTCTAMATTCCAGAAATTTCACCCCATAAACAACAAGAGAAAGAGCAGATGCCTCATTCAACTCTCCGCTCGTCTCATTAATCGTATCAATTTTTGCCAACGGATAGGCAGTAGAAGATGCATCTCCATATGCCCAAATACTATCTCCTTCCAACTCCAGAATCTCCGTAAACATTTCTTTTTTTGCCAACTTTGCAGCCAATGTCAATGGAGACAAACTCTGTTTGTTAACTGTCCGAAGACTGGCACCACATTCCAGAGCAAGTTTGAACATTGCCATGTTTTCATGGATCACACACATATGAAGTACTGTATTTCCATTTGTATCCTGTGCGTTTGGATTTGCTTTGAACGCAAGAAGAAGTCGGAACATTTCTGGTTGATTCAGGCAAGCAGCAAATGAGAGGGGATACTCTCCAAGATACATGTTTCTGAAAATCTAGCTTGTTTTATCGAACAGTAAATAGTCCGTACCCAGTGTAGTTTGTCTTCAATGAGAGCTCTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAGAAGAGTGTCGAGGAGAC</pcr_primer_p1>
		<pcr_primer_p2>TGGAGTTGGAAGGAGATAGTATT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TCTAGAAGAGTGTCGAGGAGACCATCGAGAAGCTCCAGATGCTCAACGGTTTGCTAAAACAGAGAAGACTACTATAATTATTCTACATTCCAGAAATTTCACCCCATAAACAACAAGAGAAAGAGCAGATGCCTCATTCAACTCTCCGCTCGTCTCATTAATCGTATCAATTTTTGCCAACGGATAGGCAGTAGAAGATGCATCTCCATATGCCCAAATACTATCTCCTTCCAACTCCA</canonical_amplicon>
		<polymorphic_amplicon>TCTAGAAGAGTGTCGAGGAGACCATCGAGAAGCTCCAGATGCTCAACGGTTTGCTAAAACAGAGAAGACTACTATAATTATTCTAMATTCCAGAAATTTCACCCCATAAACAACAAGAGAAAGAGCAGATGCCTCATTCAACTCTCCGCTCGTCTCATTAATCGTATCAATTTTTGCCAACGGATAGGCAGTAGAAGATGCATCTCCATATGCCCAAATACTATCTCCTTCCAACTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13594</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>70810</contig_pos>
        <strand>+</strand>
        <context>TGCTAAAACA[A/G]AGAAGACTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCGAGGAGACCATCGAGAAGCTCCAGATGCTCAACGGTTTGCTAAAACA</left_flank>
        <right_flank>AGAAGACTACTATAATTATTCTACATTCCAGAAATTTCACCCCATAAACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAGCAATCATTTATTCACTCACATAAGCATTGGCAAACGGGATATTGGGATCGAAGTATTGCCGTAGATGACATTGAGTCATTGCCTCGTCTGAAAAAATGTTTCTCTCAAGAAATTCATACTACAAACCCTGAAATCCTATCCCTCAACTCACTCCATTCAACCAATCCAGTCGTAGTATTAATGATTGGCTTCACAATCGTCTGCCCTTCTGCCCCATGTCGTCCGGGAAATGGCTCGGAATATCTATTGATCCATCCTTCTGTGATCATTTCAGTTGAAAATCCAATTGGGCGAAGAGTGAATGCAGTCACAAAGCAAACATAATACAATGTGAATGCAGTGAATGAGACAATCATACTGAAAATATCAAGTTATGGTTATTTTTACCGGCCTAATGGATTACTTTCTCTTGGCAAACGCCTCCCATTTCGCTTCTAGAAGAGTGTCGAGGAGACCATCGAGAAGCTCCAGATGCTCAACGGTTTGCTAAAACAGAGAAGACTACTATAATTATTCTACATTCCAGAAATTTCACCCCATAAACAACAAGAGAAAGAGCAGATGCCTCATTCAACTCTCCGCTCGTCTCATTAATCGTATCAATTTTTGCCAACGGATAGGCAGTAGAAGATGCATCTCCATATGCCCAAATACTATCTCCTTCCAACTCCAGAATCTCCGTAAACATTTCTTTTTTTGCCAACTTTGCAGCCAATGTCAATGGAGACAAACTCTGTTTGTTAACTGTCCGAAGACTGGCACCACATTCCAGAGCAAGTTTGAACATTGCCATGTTTTCATGGATCACACACATATGAAGTACTGTATTTCCATTTGTATCCTGTGCGTTTGGATTTGCTTTGAACGCAAGAAGAAGTCGGAACATTTCTGGTTGATTCAGGCAAGCAGCAAATGAGAGGGGATACTCTCCAAGATACATGTTTCTGAAAATCTAGCTTGTTTTATCGAACAGTAAATAGTCCGTACCCAGTGTA</canonical>
            <polymorphic>ACCAGCAATCATTTATTCACTCACATAAGCATTGGCAAACGGGATATTGGGATCGAAGTATTGCCGTAGATGACATTGAGTCATTGCCTCGTCTGAAAAAATGTTTCTCTCAAGAAATTCATACTACAAACCCTGAAATCCTATCCCTCAACTCACTCCATTCAACCAATCCAGTCGTAGTATTAATGATTGGCTTCACAATCGTCTGCCCTTCTGCCCCATGTCGTCCGGGAAATGGCTCGGAATATCTATTGATCCATCCTTCTGTGATCATTTCAGTTGAAAATCCAATTGGGCGAAGAGTGAATGCAGTCACAAAGCAAACATAATACAATGTGAATGCAGTGAATGAGACAATCATACTGAAAATATCAAGTTATGGTTATTTTTACCGGCCTAATGGATTACTTTCTCTTGGCAAACGCCTCCCATTTCGCTTCTAGAAGAGTGTCGAGGAGACCATCGAGAAGCTCCAGATGCTCAACGGTTTGCTAAAACARAGAAGACTACTATAATTATTCTACATTCCAGAAATTTCACCCCATAAACAACAAGAGAAAGAGCAGATGCCTCATTCAACTCTCCGCTCGTCTCATTAATCGTATCAATTTTTGCCAACGGATAGGCAGTAGAAGATGCATCTCCATATGCCCAAATACTATCTCCTTCCAACTCCAGAATCTCCGTAAACATTTCTTTTTTTGCCAACTTTGCAGCCAATGTCAATGGAGACAAACTCTGTTTGTTAACTGTCCGAAGACTGGCACCACATTCCAGAGCAAGTTTGAACATTGCCATGTTTTCATGGATCACACACATATGAAGTACTGTATTTCCATTTGTATCCTGTGCGTTTGGATTTGCTTTGAACGCAAGAAGAAGTCGGAACATTTCTGGTTGATTCAGGCAAGCAGCAAATGAGAGGGGATACTCTCCAAGATACATGTTTCTGAAAATCTAGCTTGTTTTATCGAACAGTAAATAGTCCGTACCCAGTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAAACATAATACAATGTGAATG</pcr_primer_p1>
		<pcr_primer_p2>TCTGCTCTTTCTCTTGTTGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCAAACATAATACAATGTGAATGCAGTGAATGAGACAATCATACTGAAAATATCAAGTTATGGTTATTTTTACCGGCCTAATGGATTACTTTCTCTTGGCAAACGCCTCCCATTTCGCTTCTAGAAGAGTGTCGAGGAGACCATCGAGAAGCTCCAGATGCTCAACGGTTTGCTAAAACAGAGAAGACTACTATAATTATTCTACATTCCAGAAATTTCACCCCATAAACAACAAGAGAAAGAGCAGA</canonical_amplicon>
		<polymorphic_amplicon>GCAAACATAATACAATGTGAATGCAGTGAATGAGACAATCATACTGAAAATATCAAGTTATGGTTATTTTTACCGGCCTAATGGATTACTTTCTCTTGGCAAACGCCTCCCATTTCGCTTCTAGAAGAGTGTCGAGGAGACCATCGAGAAGCTCCAGATGCTCAACGGTTTGCTAAAACARAGAAGACTACTATAATTATTCTACATTCCAGAAATTTCACCCCATAAACAACAAGAGAAAGAGCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13595</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>70707</contig_pos>
        <strand>+</strand>
        <context>TTTTACCGGC[C/T]TAATGGATTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAATGAGACAATCATACTGAAAATATCAAGTTATGGTTATTTTTACCGGC</left_flank>
        <right_flank>TAATGGATTACTTTCTCTTGGCAAACGCCTCCCATTTCGCTTCTAGAAGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAATTCTTTTGATGTCACGAAAATCGAGAAACATTTGTATGATGATTCCAATCACAACGAACACTTCAAAAACCAATCGAATCTGCAAACCTGCTACATCTACCAGCAATCATTTATTCACTCACATAAGCATTGGCAAACGGGATATTGGGATCGAAGTATTGCCGTAGATGACATTGAGTCATTGCCTCGTCTGAAAAAATGTTTCTCTCAAGAAATTCATACTACAAACCCTGAAATCCTATCCCTCAACTCACTCCATTCAACCAATCCAGTCGTAGTATTAATGATTGGCTTCACAATCGTCTGCCCTTCTGCCCCATGTCGTCCGGGAAATGGCTCGGAATATCTATTGATCCATCCTTCTGTGATCATTTCAGTTGAAAATCCAATTGGGCGAAGAGTGAATGCAGTCACAAAGCAAACATAATACAATGTGAATGCAGTGAATGAGACAATCATACTGAAAATATCAAGTTATGGTTATTTTTACCGGCCTAATGGATTACTTTCTCTTGGCAAACGCCTCCCATTTCGCTTCTAGAAGAGTGTCGAGGAGACCATCGAGAAGCTCCAGATGCTCAACGGTTTGCTAAAACAGAGAAGACTACTATAATTATTCTACATTCCAGAAATTTCACCCCATAAACAACAAGAGAAAGAGCAGATGCCTCATTCAACTCTCCGCTCGTCTCATTAATCGTATCAATTTTTGCCAACGGATAGGCAGTAGAAGATGCATCTCCATATGCCCAAATACTATCTCCTTCCAACTCCAGAATCTCCGTAAACATTTCTTTTTTTGCCAACTTTGCAGCCAATGTCAATGGAGACAAACTCTGTTTGTTAACTGTCCGAAGACTGGCACCACATTCCAGAGCAAGTTTGAACATTGCCATGTTTTCATGGATCACACACATATGAAGTACTGTATTTCCATTTGTATCCTGTGCGTTTGGATTTGCTTTGAACGCAAGAAGAAGTCGGAACATTTCTGG</canonical>
            <polymorphic>TCCAATTCTTTTGATGTCACGAAAATCGAGAAACATTTGTATGATGATTCCAATCACAACGAACACTTCAAAAACCAATCGAATCTGCAAACCTGCTACATCTACCAGCAATCATTTATTCACTCACATAAGCATTGGCAAACGGGATATTGGGATCGAAGTATTGCCGTAGATGACATTGAGTCATTGCCTCGTCTGAAAAAATGTTTCTCTCAAGAAATTCATACTACAAACCCTGAAATCCTATCCCTCAACTCACTCCATTCAACCAATCCAGTCGTAGTATTAATGATTGGCTTCACAATCGTCTGCCCTTCTGCCCCATGTCGTCCGGGAAATGGCTCGGAATATCTATTGATCCATCCTTCTGTGATCATTTCAGTTGAAAATCCAATTGGGCGAAGAGTGAATGCAGTCACAAAGCAAACATAATACAATGTGAATGCAGTGAATGAGACAATCATACTGAAAATATCAAGTTATGGTTATTTTTACCGGCYTAATGGATTACTTTCTCTTGGCAAACGCCTCCCATTTCGCTTCTAGAAGAGTGTCGAGGAGACCATCGAGAAGCTCCAGATGCTCAACGGTTTGCTAAAACAGAGAAGACTACTATAATTATTCTACATTCCAGAAATTTCACCCCATAAACAACAAGAGAAAGAGCAGATGCCTCATTCAACTCTCCGCTCGTCTCATTAATCGTATCAATTTTTGCCAACGGATAGGCAGTAGAAGATGCATCTCCATATGCCCAAATACTATCTCCTTCCAACTCCAGAATCTCCGTAAACATTTCTTTTTTTGCCAACTTTGCAGCCAATGTCAATGGAGACAAACTCTGTTTGTTAACTGTCCGAAGACTGGCACCACATTCCAGAGCAAGTTTGAACATTGCCATGTTTTCATGGATCACACACATATGAAGTACTGTATTTCCATTTGTATCCTGTGCGTTTGGATTTGCTTTGAACGCAAGAAGAAGTCGGAACATTTCTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>296 246 181 157 75 45</canonical_bands>
                <polymorphic_bands>296 246 232 181 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAAACATAATACAATGTGAATG</pcr_primer_p1>
		<pcr_primer_p2>TCTGCTCTTTCTCTTGTTGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCAAACATAATACAATGTGAATGCAGTGAATGAGACAATCATACTGAAAATATCAAGTTATGGTTATTTTTACCGGCCTAATGGATTACTTTCTCTTGGCAAACGCCTCCCATTTCGCTTCTAGAAGAGTGTCGAGGAGACCATCGAGAAGCTCCAGATGCTCAACGGTTTGCTAAAACAGAGAAGACTACTATAATTATTCTACATTCCAGAAATTTCACCCCATAAACAACAAGAGAAAGAGCAGA</canonical_amplicon>
		<polymorphic_amplicon>GCAAACATAATACAATGTGAATGCAGTGAATGAGACAATCATACTGAAAATATCAAGTTATGGTTATTTTTACCGGCYTAATGGATTACTTTCTCTTGGCAAACGCCTCCCATTTCGCTTCTAGAAGAGTGTCGAGGAGACCATCGAGAAGCTCCAGATGCTCAACGGTTTGCTAAAACAGAGAAGACTACTATAATTATTCTACATTCCAGAAATTTCACCCCATAAACAACAAGAGAAAGAGCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13599</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>89552</contig_pos>
        <strand>+</strand>
        <context>GCTACATCAG[A/G]GTCCAGACAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAATTCTCTTCGTCTCGTACATTCTTTCTTGGAATCCGGGCTACATCAG</left_flank>
        <right_flank>GTCCAGACATGTGCTTTGATTTCTGACAACGTCTGCACTTTTCCACCTCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCCAAATTGAATTTTTGCAGATAAAATCCCAAGTTGATCTCATTAATTTCGCACGAGAAATTTTCTCAACACAACCGACATCAACGTCGTCGTCCGTCGTTCCTCGCGATATCCAGAATTTGAACCCGATCGTTGGTTCGTTGGCCTCCGGAAAGTCGCCGACCGCAATAACCGCCATTGCGGCTACTGCCGCAAACATGACTCCTCAAATCGGTGGGTTACGGTAGATTGTTATTGTCAAAGATTTTGGGGGTGCAAATAAAAATAACCGCCAAGACGATTGTGTAAACAACAAGAATCCGACAAAATTAACAAAAATGTCTCCGTTTCCAGGAGGCCTCACCTCGCTCGGCTCCCTCACATCGATTCCAGCCGAACTGTTGCTCCAATTAAGCAGACTGGATAATATCAATCTTCTGCCGTAAGTCTTTATTAATCCTCCTCTGTATAATTCTCTTCGTCTCGTACATTCTTTCTTGGAATCCGGGCTACATCAGGGTCCAGACATGTGCTTTGATTTCTGACAACGTCTGCACTTTTCCACCTCTGATTTCTGCCCTAGCAATCAAAATGAGCTCTGAGTAACCAGGTTCTGTGTAGTGTCTCAAAATTAATCAAGTGGATACGTGCTCCTTCTTTAGTTCGCCTACGGCTGAGTAACCAGGTTCTGTGCTTCTTGGAATTAAGCTAGTGTTTTTCTATATGAGTTCATAATACAAACTAAAGAAGCTAAACGTCTGAAAATCAAAGAATGAAAATGCAGGCTCCTTTGTTAATGTATTTCGTTATGAGTGTGTTGCCTTGGCTTCAGATATATAATACGACTTCTTCTGCTTCTTCGTGTCTATGTCGAGTTAGAGGAAATGCGCAAAAGAGAGCATTGAAACAAAGATCCGTATGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAAAAGAAGGAATGTGTGAGAGAGACGGAAAGGTGCAAAGTGCGTTTTGGCTCTCCCAGGCTTTTCA</canonical>
            <polymorphic>TTCCCAAATTGAATTTTTGCAGATAAAATCCCAAGTTGATCTCATTAATTTCGCACGAGAAATTTTCTCAACACAACCGACATCAACGTCGTCGTCCGTCGTTCCTCGCGATATCCAGAATTTGAACCCGATCGTTGGTTCGTTGGCCTCCGGAAAGTCGCCGACCGCAATAACCGCCATTGCGGCTACTGCCGCAAACATGACTCCTCAAATCGGTGGGTTACGGTAGATTGTTATTGTCAAAGATTTTGGGGGTGCAAATAAAAATAACCGCCAAGACGATTGTGTAAACAACAAGAATCCGACAAAATTAACAAAAATGTCTCCGTTTCCAGGAGGCCTCACCTCGCTCGGCTCCCTCACATCGATTCCAGCCGAACTGTTGCTCCAATTAAGCAGACTGGATAATATCAATCTTCTGCCGTAAGTCTTTATTAATCCTCCTCTGTATAATTCTCTTCGTCTCGTACATTCTTTCTTGGAATCCGGGCTACATCAGRGTCCAGACATGTGCTTTGATTTCTGACAACGTCTGCACTTTTCCACCTCTGATTTCTGCCCTAGCAATCAAAATGAGCTCTGAGTAACCAGGTTCTGTGTAGTGTCTCAAAATTAATCAAGTGGATACGTGCTCCTTCTTTAGTTCGCCTACGGCTGAGTAACCAGGTTCTGTGCTTCTTGGAATTAAGCTAGTGTTTTTCTATATGAGTTCATAATACAAACTAAAGAAGCTAAACGTCTGAAAATCAAAGAATGAAAATGCAGGCTCCTTTGTTAATGTATTTCGTTATGAGTGTGTTGCCTTGGCTTCAGATATATAATACGACTTCTTCTGCTTCTTCGTGTCTATGTCGAGTTAGAGGAAATGCGCAAAAGAGAGCATTGAAACAAAGATCCGTATGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAAAAGAAGGAATGTGTGAGAGAGACGGAAAGGTGCAAAGTGCGTTTTGGCTCTCCCAGGCTTTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>355 266 233 146</canonical_bands>
                <polymorphic_bands>412 355 233</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTATAATTCTCTTCGTCTCGTA</pcr_primer_p1>
		<pcr_primer_p2>ACTAGCTTAATTCCAAGAAGCAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTGTATAATTCTCTTCGTCTCGTACATTCTTTCTTGGAATCCGGGCTACATCAGGGTCCAGACATGTGCTTTGATTTCTGACAACGTCTGCACTTTTCCACCTCTGATTTCTGCCCTAGCAATCAAAATGAGCTCTGAGTAACCAGGTTCTGTGTAGTGTCTCAAAATTAATCAAGTGGATACGTGCTCCTTCTTTAGTTCGCCTACGGCTGAGTAACCAGGTTCTGTGCTTCTTGGAATTAAGCTAGT</canonical_amplicon>
		<polymorphic_amplicon>CTGTATAATTCTCTTCGTCTCGTACATTCTTTCTTGGAATCCGGGCTACATCAGRGTCCAGACATGTGCTTTGATTTCTGACAACGTCTGCACTTTTCCACCTCTGATTTCTGCCCTAGCAATCAAAATGAGCTCTGAGTAACCAGGTTCTGTGTAGTGTCTCAAAATTAATCAAGTGGATACGTGCTCCTTCTTTAGTTCGCCTACGGCTGAGTAACCAGGTTCTGTGCTTCTTGGAATTAAGCTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13600</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>89526</contig_pos>
        <strand>+</strand>
        <context>CTCGTACATT[A/C]TTTCTTGGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTAAGTCTTTATTAATCCTCCTCTGTATAATTCTCTTCGTCTCGTACATT</left_flank>
        <right_flank>TTTCTTGGAATCCGGGCTACATCAGGGTCCAGACATGTGCTTTGATTTCT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAACTTTTCCGAATTCTGATTTGAATTCCCAAATTGAATTTTTGCAGATAAAATCCCAAGTTGATCTCATTAATTTCGCACGAGAAATTTTCTCAACACAACCGACATCAACGTCGTCGTCCGTCGTTCCTCGCGATATCCAGAATTTGAACCCGATCGTTGGTTCGTTGGCCTCCGGAAAGTCGCCGACCGCAATAACCGCCATTGCGGCTACTGCCGCAAACATGACTCCTCAAATCGGTGGGTTACGGTAGATTGTTATTGTCAAAGATTTTGGGGGTGCAAATAAAAATAACCGCCAAGACGATTGTGTAAACAACAAGAATCCGACAAAATTAACAAAAATGTCTCCGTTTCCAGGAGGCCTCACCTCGCTCGGCTCCCTCACATCGATTCCAGCCGAACTGTTGCTCCAATTAAGCAGACTGGATAATATCAATCTTCTGCCGTAAGTCTTTATTAATCCTCCTCTGTATAATTCTCTTCGTCTCGTACATTCTTTCTTGGAATCCGGGCTACATCAGGGTCCAGACATGTGCTTTGATTTCTGACAACGTCTGCACTTTTCCACCTCTGATTTCTGCCCTAGCAATCAAAATGAGCTCTGAGTAACCAGGTTCTGTGTAGTGTCTCAAAATTAATCAAGTGGATACGTGCTCCTTCTTTAGTTCGCCTACGGCTGAGTAACCAGGTTCTGTGCTTCTTGGAATTAAGCTAGTGTTTTTCTATATGAGTTCATAATACAAACTAAAGAAGCTAAACGTCTGAAAATCAAAGAATGAAAATGCAGGCTCCTTTGTTAATGTATTTCGTTATGAGTGTGTTGCCTTGGCTTCAGATATATAATACGACTTCTTCTGCTTCTTCGTGTCTATGTCGAGTTAGAGGAAATGCGCAAAAGAGAGCATTGAAACAAAGATCCGTATGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAAAAGAAGGAATGTGTGAGAGAGACGGAAAGGTGCAAAGT</canonical>
            <polymorphic>ATAACTTTTCCGAATTCTGATTTGAATTCCCAAATTGAATTTTTGCAGATAAAATCCCAAGTTGATCTCATTAATTTCGCACGAGAAATTTTCTCAACACAACCGACATCAACGTCGTCGTCCGTCGTTCCTCGCGATATCCAGAATTTGAACCCGATCGTTGGTTCGTTGGCCTCCGGAAAGTCGCCGACCGCAATAACCGCCATTGCGGCTACTGCCGCAAACATGACTCCTCAAATCGGTGGGTTACGGTAGATTGTTATTGTCAAAGATTTTGGGGGTGCAAATAAAAATAACCGCCAAGACGATTGTGTAAACAACAAGAATCCGACAAAATTAACAAAAATGTCTCCGTTTCCAGGAGGCCTCACCTCGCTCGGCTCCCTCACATCGATTCCAGCCGAACTGTTGCTCCAATTAAGCAGACTGGATAATATCAATCTTCTGCCGTAAGTCTTTATTAATCCTCCTCTGTATAATTCTCTTCGTCTCGTACATTMTTTCTTGGAATCCGGGCTACATCAGGGTCCAGACATGTGCTTTGATTTCTGACAACGTCTGCACTTTTCCACCTCTGATTTCTGCCCTAGCAATCAAAATGAGCTCTGAGTAACCAGGTTCTGTGTAGTGTCTCAAAATTAATCAAGTGGATACGTGCTCCTTCTTTAGTTCGCCTACGGCTGAGTAACCAGGTTCTGTGCTTCTTGGAATTAAGCTAGTGTTTTTCTATATGAGTTCATAATACAAACTAAAGAAGCTAAACGTCTGAAAATCAAAGAATGAAAATGCAGGCTCCTTTGTTAATGTATTTCGTTATGAGTGTGTTGCCTTGGCTTCAGATATATAATACGACTTCTTCTGCTTCTTCGTGTCTATGTCGAGTTAGAGGAAATGCGCAAAAGAGAGCATTGAAACAAAGATCCGTATGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAAAAGAAGGAATGTGTGAGAGAGACGGAAAGGTGCAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAATATCAATCTTCTGCCGTAA</pcr_primer_p1>
		<pcr_primer_p2>GTAGGCGAACTAAAGAAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATAATATCAATCTTCTGCCGTAAGTCTTTATTAATCCTCCTCTGTATAATTCTCTTCGTCTCGTACATTCTTTCTTGGAATCCGGGCTACATCAGGGTCCAGACATGTGCTTTGATTTCTGACAACGTCTGCACTTTTCCACCTCTGATTTCTGCCCTAGCAATCAAAATGAGCTCTGAGTAACCAGGTTCTGTGTAGTGTCTCAAAATTAATCAAGTGGATACGTGCTCCTTCTTTAGTTCGCCTAC</canonical_amplicon>
		<polymorphic_amplicon>ATAATATCAATCTTCTGCCGTAAGTCTTTATTAATCCTCCTCTGTATAATTCTCTTCGTCTCGTACATTMTTTCTTGGAATCCGGGCTACATCAGGGTCCAGACATGTGCTTTGATTTCTGACAACGTCTGCACTTTTCCACCTCTGATTTCTGCCCTAGCAATCAAAATGAGCTCTGAGTAACCAGGTTCTGTGTAGTGTCTCAAAATTAATCAAGTGGATACGTGCTCCTTCTTTAGTTCGCCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13601</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>89218</contig_pos>
        <strand>+</strand>
        <context>AGTCGCCGAC[A/C]GCAATAACCG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAGAATTTGAACCCGATCGTTGGTTCGTTGGCCTCCGGAAAGTCGCCGAC</left_flank>
        <right_flank>GCAATAACCGCCATTGCGGCTACTGCCGCAAACATGACTCCTCAAATCGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACCATTTATCCGGGCACCCCAGCCGCCCAGAAGCCAACCAAATCGCATTACAAAGACCCCAATAGTGGGGACATTTGCTCCGCCCCTTGCGCCGTGTCTTCTTGAGAACTCGATTTGTATACTGCTTTTTTCGTTTCTCAGTTACTTGAAACCAGTGTTTTAATCTAGCACATATTTTGATTTTTTAGACATCTTCTATGGAATGCCGCCAGTATACGAACCCACAGCGACGACAACATCAGCTGCGTCGGTGTGGCCAATTGGAATTCCGCAGGTTTAATATTTACCTTTGGCTTCTTTTTTCTCATAACTTTTCCGAATTCTGATTTGAATTCCCAAATTGAATTTTTGCAGATAAAATCCCAAGTTGATCTCATTAATTTCGCACGAGAAATTTTCTCAACACAACCGACATCAACGTCGTCGTCCGTCGTTCCTCGCGATATCCAGAATTTGAACCCGATCGTTGGTTCGTTGGCCTCCGGAAAGTCGCCGACCGCAATAACCGCCATTGCGGCTACTGCCGCAAACATGACTCCTCAAATCGGTGGGTTACGGTAGATTGTTATTGTCAAAGATTTTGGGGGTGCAAATAAAAATAACCGCCAAGACGATTGTGTAAACAACAAGAATCCGACAAAATTAACAAAAATGTCTCCGTTTCCAGGAGGCCTCACCTCGCTCGGCTCCCTCACATCGATTCCAGCCGAACTGTTGCTCCAATTAAGCAGACTGGATAATATCAATCTTCTGCCGTAAGTCTTTATTAATCCTCCTCTGTATAATTCTCTTCGTCTCGTACATTCTTTCTTGGAATCCGGGCTACATCAGGGTCCAGACATGTGCTTTGATTTCTGACAACGTCTGCACTTTTCCACCTCTGATTTCTGCCCTAGCAATCAAAATGAGCTCTGAGTAACCAGGTTCTGTGTAGTGTCTCAAAATTAATCAAGTGGATACGTGCTCCTTCTTTAGTTCGCCTACGGCTGAGTAACCAG</canonical>
            <polymorphic>TGACCATTTATCCGGGCACCCCAGCCGCCCAGAAGCCAACCAAATCGCATTACAAAGACCCCAATAGTGGGGACATTTGCTCCGCCCCTTGCGCCGTGTCTTCTTGAGAACTCGATTTGTATACTGCTTTTTTCGTTTCTCAGTTACTTGAAACCAGTGTTTTAATCTAGCACATATTTTGATTTTTTAGACATCTTCTATGGAATGCCGCCAGTATACGAACCCACAGCGACGACAACATCAGCTGCGTCGGTGTGGCCAATTGGAATTCCGCAGGTTTAATATTTACCTTTGGCTTCTTTTTTCTCATAACTTTTCCGAATTCTGATTTGAATTCCCAAATTGAATTTTTGCAGATAAAATCCCAAGTTGATCTCATTAATTTCGCACGAGAAATTTTCTCAACACAACCGACATCAACGTCGTCGTCCGTCGTTCCTCGCGATATCCAGAATTTGAACCCGATCGTTGGTTCGTTGGCCTCCGGAAAGTCGCCGACMGCAATAACCGCCATTGCGGCTACTGCCGCAAACATGACTCCTCAAATCGGTGGGTTACGGTAGATTGTTATTGTCAAAGATTTTGGGGGTGCAAATAAAAATAACCGCCAAGACGATTGTGTAAACAACAAGAATCCGACAAAATTAACAAAAATGTCTCCGTTTCCAGGAGGCCTCACCTCGCTCGGCTCCCTCACATCGATTCCAGCCGAACTGTTGCTCCAATTAAGCAGACTGGATAATATCAATCTTCTGCCGTAAGTCTTTATTAATCCTCCTCTGTATAATTCTCTTCGTCTCGTACATTCTTTCTTGGAATCCGGGCTACATCAGGGTCCAGACATGTGCTTTGATTTCTGACAACGTCTGCACTTTTCCACCTCTGATTTCTGCCCTAGCAATCAAAATGAGCTCTGAGTAACCAGGTTCTGTGTAGTGTCTCAAAATTAATCAAGTGGATACGTGCTCCTTCTTTAGTTCGCCTACGGCTGAGTAACCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>395 228 126 79 63 57 25 18 9</canonical_bands>
                <polymorphic_bands>395 237 126 79 63 57 25 18</polymorphic_bands>
            </assay>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>501 466 33</canonical_bands>
                <polymorphic_bands>534 466</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATAAAATCCCAAGTTGATCTC</pcr_primer_p1>
		<pcr_primer_p2>CCAAAATCTTTGACAATAACAAT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>AGATAAAATCCCAAGTTGATCTCATTAATTTCGCACGAGAAATTTTCTCAACACAACCGACATCAACGTCGTCGTCCGTCGTTCCTCGCGATATCCAGAATTTGAACCCGATCGTTGGTTCGTTGGCCTCCGGAAAGTCGCCGACCGCAATAACCGCCATTGCGGCTACTGCCGCAAACATGACTCCTCAAATCGGTGGGTTACGGTAGATTGTTATTGTCAAAGATTTTGG</canonical_amplicon>
		<polymorphic_amplicon>AGATAAAATCCCAAGTTGATCTCATTAATTTCGCACGAGAAATTTTCTCAACACAACCGACATCAACGTCGTCGTCCGTCGTTCCTCGCGATATCCAGAATTTGAACCCGATCGTTGGTTCGTTGGCCTCCGGAAAGTCGCCGACMGCAATAACCGCCATTGCGGCTACTGCCGCAAACATGACTCCTCAAATCGGTGGGTTACGGTAGATTGTTATTGTCAAAGATTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13602</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>89842</contig_pos>
        <strand>+</strand>
        <context>GTATTTCGTT[A/G]TGAGTGTGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGAAAATCAAAGAATGAAAATGCAGGCTCCTTTGTTAATGTATTTCGTT</left_flank>
        <right_flank>TGAGTGTGTTGCCTTGGCTTCAGATATATAATACGACTTCTTCTGCTTCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAACAAGAATCCGACAAAATTAACAAAAATGTCTCCGTTTCCAGGAGGCCTCACCTCGCTCGGCTCCCTCACATCGATTCCAGCCGAACTGTTGCTCCAATTAAGCAGACTGGATAATATCAATCTTCTGCCGTAAGTCTTTATTAATCCTCCTCTGTATAATTCTCTTCGTCTCGTACATTCTTTCTTGGAATCCGGGCTACATCAGGGTCCAGACATGTGCTTTGATTTCTGACAACGTCTGCACTTTTCCACCTCTGATTTCTGCCCTAGCAATCAAAATGAGCTCTGAGTAACCAGGTTCTGTGTAGTGTCTCAAAATTAATCAAGTGGATACGTGCTCCTTCTTTAGTTCGCCTACGGCTGAGTAACCAGGTTCTGTGCTTCTTGGAATTAAGCTAGTGTTTTTCTATATGAGTTCATAATACAAACTAAAGAAGCTAAACGTCTGAAAATCAAAGAATGAAAATGCAGGCTCCTTTGTTAATGTATTTCGTTATGAGTGTGTTGCCTTGGCTTCAGATATATAATACGACTTCTTCTGCTTCTTCGTGTCTATGTCGAGTTAGAGGAAATGCGCAAAAGAGAGCATTGAAACAAAGATCCGTATGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAAAAGAAGGAATGTGTGAGAGAGACGGAAAGGTGCAAAGTGCGTTTTGGCTCTCCCAGGCTTTTCATGAAGAAAATAGCACTTTCGATTTTTAAAGATTGCAGTTTATGAAGAATCGGGAATGGAACAAGATTTACATATTTTAAAAAAACAGTGTGGTATTCGTTTCAAGGGAATACTACAGTACTCCACAGTTATGATATTTAGATTACGCCGATATTTAGATTAGCGAAATGAACGGTTGAAGTCCTTCATGCTTAAACATCACTGCTTTTTCGGGCTTTCCTTTCGACCAACGGAACAACTAAAGAATCTCCCTCGAGGTGATGACAGATGCTCTCCTCATCAAAATAAACC</canonical>
            <polymorphic>ACAACAAGAATCCGACAAAATTAACAAAAATGTCTCCGTTTCCAGGAGGCCTCACCTCGCTCGGCTCCCTCACATCGATTCCAGCCGAACTGTTGCTCCAATTAAGCAGACTGGATAATATCAATCTTCTGCCGTAAGTCTTTATTAATCCTCCTCTGTATAATTCTCTTCGTCTCGTACATTCTTTCTTGGAATCCGGGCTACATCAGGGTCCAGACATGTGCTTTGATTTCTGACAACGTCTGCACTTTTCCACCTCTGATTTCTGCCCTAGCAATCAAAATGAGCTCTGAGTAACCAGGTTCTGTGTAGTGTCTCAAAATTAATCAAGTGGATACGTGCTCCTTCTTTAGTTCGCCTACGGCTGAGTAACCAGGTTCTGTGCTTCTTGGAATTAAGCTAGTGTTTTTCTATATGAGTTCATAATACAAACTAAAGAAGCTAAACGTCTGAAAATCAAAGAATGAAAATGCAGGCTCCTTTGTTAATGTATTTCGTTRTGAGTGTGTTGCCTTGGCTTCAGATATATAATACGACTTCTTCTGCTTCTTCGTGTCTATGTCGAGTTAGAGGAAATGCGCAAAAGAGAGCATTGAAACAAAGATCCGTATGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAAAAGAAGGAATGTGTGAGAGAGACGGAAAGGTGCAAAGTGCGTTTTGGCTCTCCCAGGCTTTTCATGAAGAAAATAGCACTTTCGATTTTTAAAGATTGCAGTTTATGAAGAATCGGGAATGGAACAAGATTTACATATTTTAAAAAAACAGTGTGGTATTCGTTTCAAGGGAATACTACAGTACTCCACAGTTATGATATTTAGATTACGCCGATATTTAGATTAGCGAAATGAACGGTTGAAGTCCTTCATGCTTAAACATCACTGCTTTTTCGGGCTTTCCTTTCGACCAACGGAACAACTAAAGAATCTCCCTCGAGGTGATGACAGATGCTCTCCTCATCAAAATAAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTCTCAAAATTAATCAAGTGG</pcr_primer_p1>
		<pcr_primer_p2>ATAGACACGAAGAAGCAGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTGTCTCAAAATTAATCAAGTGGATACGTGCTCCTTCTTTAGTTCGCCTACGGCTGAGTAACCAGGTTCTGTGCTTCTTGGAATTAAGCTAGTGTTTTTCTATATGAGTTCATAATACAAACTAAAGAAGCTAAACGTCTGAAAATCAAAGAATGAAAATGCAGGCTCCTTTGTTAATGTATTTCGTTATGAGTGTGTTGCCTTGGCTTCAGATATATAATACGACTTCTTCTGCTTCTTCGTGTCTAT</canonical_amplicon>
		<polymorphic_amplicon>GTGTCTCAAAATTAATCAAGTGGATACGTGCTCCTTCTTTAGTTCGCCTACGGCTGAGTAACCAGGTTCTGTGCTTCTTGGAATTAAGCTAGTGTTTTTCTATATGAGTTCATAATACAAACTAAAGAAGCTAAACGTCTGAAAATCAAAGAATGAAAATGCAGGCTCCTTTGTTAATGTATTTCGTTRTGAGTGTGTTGCCTTGGCTTCAGATATATAATACGACTTCTTCTGCTTCTTCGTGTCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13603</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>89948</contig_pos>
        <strand></strand>
        <context>AAACAAAGAT[C/T]YGYYTGTTGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTATGTCGAGTTAGAGGAAATGCGCAAAAGAGAGCATTGAAACAAAGAT</left_flank>
        <right_flank>CGTATGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAAAAGAAGGAAT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGACTGGATAATATCAATCTTCTGCCGTAAGTCTTTATTAATCCTCCTCTGTATAATTCTCTTCGTCTCGTACATTCTTTCTTGGAATCCGGGCTACATCAGGGTCCAGACATGTGCTTTGATTTCTGACAACGTCTGCACTTTTCCACCTCTGATTTCTGCCCTAGCAATCAAAATGAGCTCTGAGTAACCAGGTTCTGTGTAGTGTCTCAAAATTAATCAAGTGGATACGTGCTCCTTCTTTAGTTCGCCTACGGCTGAGTAACCAGGTTCTGTGCTTCTTGGAATTAAGCTAGTGTTTTTCTATATGAGTTCATAATACAAACTAAAGAAGCTAAACGTCTGAAAATCAAAGAATGAAAATGCAGGCTCCTTTGTTAATGTATTTCGTTATGAGTGTGTTGCCTTGGCTTCAGATATATAATACGACTTCTTCTGCTTCTTCGTGTCTATGTCGAGTTAGAGGAAATGCGCAAAAGAGAGCATTGAAACAAAGATCCGTATGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAAAAGAAGGAATGTGTGAGAGAGACGGAAAGGTGCAAAGTGCGTTTTGGCTCTCCCAGGCTTTTCATGAAGAAAATAGCACTTTCGATTTTTAAAGATTGCAGTTTATGAAGAATCGGGAATGGAACAAGATTTACATATTTTAAAAAAACAGTGTGGTATTCGTTTCAAGGGAATACTACAGTACTCCACAGTTATGATATTTAGATTACGCCGATATTTAGATTAGCGAAATGAACGGTTGAAGTCCTTCATGCTTAAACATCACTGCTTTTTCGGGCTTTCCTTTCGACCAACGGAACAACTAAAGAATCTCCCTCGAGGTGATGACAGATGCTCTCCTCATCAAAATAAACCGGAGGATAATGAGGGAAAATAAGTAGAAGGGCGGTGTCCTCCGCCCCGGAAAATGGTTTATTATTTCCTCAAGAAGCTTCCCTCTTTCATTTTGTTCCGAGTATTT</canonical>
            <polymorphic>CAGACTGGATAATATCAATCTTCTGCCGTAAGTCTTTATTAATCCTCCTCTGTATAATTCTCTTCGTCTCGTACATTCTTTCTTGGAATCCGGGCTACATCAGGGTCCAGACATGTGCTTTGATTTCTGACAACGTCTGCACTTTTCCACCTCTGATTTCTGCCCTAGCAATCAAAATGAGCTCTGAGTAACCAGGTTCTGTGTAGTGTCTCAAAATTAATCAAGTGGATACGTGCTCCTTCTTTAGTTCGCCTACGGCTGAGTAACCAGGTTCTGTGCTTCTTGGAATTAAGCTAGTGTTTTTCTATATGAGTTCATAATACAAACTAAAGAAGCTAAACGTCTGAAAATCAAAGAATGAAAATGCAGGCTCCTTTGTTAATGTATTTCGTTATGAGTGTGTTGCCTTGGCTTCAGATATATAATACGACTTCTTCTGCTTCTTCGTGTCTATGTCGAGTTAGAGGAAATGCGCAAAAGAGAGCATTGAAACAAAGATYCGTATGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAAAAGAAGGAATGTGTGAGAGAGACGGAAAGGTGCAAAGTGCGTTTTGGCTCTCCCAGGCTTTTCATGAAGAAAATAGCACTTTCGATTTTTAAAGATTGCAGTTTATGAAGAATCGGGAATGGAACAAGATTTACATATTTTAAAAAAACAGTGTGGTATTCGTTTCAAGGGAATACTACAGTACTCCACAGTTATGATATTTAGATTACGCCGATATTTAGATTAGCGAAATGAACGGTTGAAGTCCTTCATGCTTAAACATCACTGCTTTTTCGGGCTTTCCTTTCGACCAACGGAACAACTAAAGAATCTCCCTCGAGGTGATGACAGATGCTCTCCTCATCAAAATAAACCGGAGGATAATGAGGGAAAATAAGTAGAAGGGCGGTGTCCTCCGCCCCGGAAAATGGTTTATTATTTCCTCAAGAAGCTTCCCTCTTTCATTTTGTTCCGAGTATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCTTGGCTTCAGATATATAATAC</pcr_primer_p1>
		<pcr_primer_p2>ATTCTTCATAAACTGCAATCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCCTTGGCTTCAGATATATAATACGACTTCTTCTGCTTCTTCGTGTCTATGTCGAGTTAGAGGAAATGCGCAAAAGAGAGCATTGAAACAAAGATCCGTATGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAAAAGAAGGAATGTGTGAGAGAGACGGAAAGGTGCAAAGTGCGTTTTGGCTCTCCCAGGCTTTTCATGAAGAAAATAGCACTTTCGATTTTTAAAGATTGCAGTTTATGAAGAAT</canonical_amplicon>
		<polymorphic_amplicon>GCCTTGGCTTCAGATATATAATACGACTTCTTCTGCTTCTTCGTGTCTATGTCGAGTTAGAGGAAATGCGCAAAAGAGAGCATTGAAACAAAGATYCGTATGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAAAAGAAGGAATGTGTGAGAGAGACGGAAAGGTGCAAAGTGCGTTTTGGCTCTCCCAGGCTTTTCATGAAGAAAATAGCACTTTCGATTTTTAAAGATTGCAGTTTATGAAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13604</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>89951</contig_pos>
        <strand></strand>
        <context>CAAAGATYYG[T/C]YTGTTGCATG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATGTCGAGTTAGAGGAAATGCGCAAAAGAGAGCATTGAAACAAAGATCCG</left_flank>
        <right_flank>ATGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAAAAGAAGGAATGTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGGATAATATCAATCTTCTGCCGTAAGTCTTTATTAATCCTCCTCTGTATAATTCTCTTCGTCTCGTACATTCTTTCTTGGAATCCGGGCTACATCAGGGTCCAGACATGTGCTTTGATTTCTGACAACGTCTGCACTTTTCCACCTCTGATTTCTGCCCTAGCAATCAAAATGAGCTCTGAGTAACCAGGTTCTGTGTAGTGTCTCAAAATTAATCAAGTGGATACGTGCTCCTTCTTTAGTTCGCCTACGGCTGAGTAACCAGGTTCTGTGCTTCTTGGAATTAAGCTAGTGTTTTTCTATATGAGTTCATAATACAAACTAAAGAAGCTAAACGTCTGAAAATCAAAGAATGAAAATGCAGGCTCCTTTGTTAATGTATTTCGTTATGAGTGTGTTGCCTTGGCTTCAGATATATAATACGACTTCTTCTGCTTCTTCGTGTCTATGTCGAGTTAGAGGAAATGCGCAAAAGAGAGCATTGAAACAAAGATCCGTATGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAAAAGAAGGAATGTGTGAGAGAGACGGAAAGGTGCAAAGTGCGTTTTGGCTCTCCCAGGCTTTTCATGAAGAAAATAGCACTTTCGATTTTTAAAGATTGCAGTTTATGAAGAATCGGGAATGGAACAAGATTTACATATTTTAAAAAAACAGTGTGGTATTCGTTTCAAGGGAATACTACAGTACTCCACAGTTATGATATTTAGATTACGCCGATATTTAGATTAGCGAAATGAACGGTTGAAGTCCTTCATGCTTAAACATCACTGCTTTTTCGGGCTTTCCTTTCGACCAACGGAACAACTAAAGAATCTCCCTCGAGGTGATGACAGATGCTCTCCTCATCAAAATAAACCGGAGGATAATGAGGGAAAATAAGTAGAAGGGCGGTGTCCTCCGCCCCGGAAAATGGTTTATTATTTCCTCAAGAAGCTTCCCTCTTTCATTTTGTTCCGAGTATTTGCA</canonical>
            <polymorphic>ACTGGATAATATCAATCTTCTGCCGTAAGTCTTTATTAATCCTCCTCTGTATAATTCTCTTCGTCTCGTACATTCTTTCTTGGAATCCGGGCTACATCAGGGTCCAGACATGTGCTTTGATTTCTGACAACGTCTGCACTTTTCCACCTCTGATTTCTGCCCTAGCAATCAAAATGAGCTCTGAGTAACCAGGTTCTGTGTAGTGTCTCAAAATTAATCAAGTGGATACGTGCTCCTTCTTTAGTTCGCCTACGGCTGAGTAACCAGGTTCTGTGCTTCTTGGAATTAAGCTAGTGTTTTTCTATATGAGTTCATAATACAAACTAAAGAAGCTAAACGTCTGAAAATCAAAGAATGAAAATGCAGGCTCCTTTGTTAATGTATTTCGTTATGAGTGTGTTGCCTTGGCTTCAGATATATAATACGACTTCTTCTGCTTCTTCGTGTCTATGTCGAGTTAGAGGAAATGCGCAAAAGAGAGCATTGAAACAAAGATCCGYATGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAAAAGAAGGAATGTGTGAGAGAGACGGAAAGGTGCAAAGTGCGTTTTGGCTCTCCCAGGCTTTTCATGAAGAAAATAGCACTTTCGATTTTTAAAGATTGCAGTTTATGAAGAATCGGGAATGGAACAAGATTTACATATTTTAAAAAAACAGTGTGGTATTCGTTTCAAGGGAATACTACAGTACTCCACAGTTATGATATTTAGATTACGCCGATATTTAGATTAGCGAAATGAACGGTTGAAGTCCTTCATGCTTAAACATCACTGCTTTTTCGGGCTTTCCTTTCGACCAACGGAACAACTAAAGAATCTCCCTCGAGGTGATGACAGATGCTCTCCTCATCAAAATAAACCGGAGGATAATGAGGGAAAATAAGTAGAAGGGCGGTGTCCTCCGCCCCGGAAAATGGTTTATTATTTCCTCAAGAAGCTTCCCTCTTTCATTTTGTTCCGAGTATTTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCTTGGCTTCAGATATATAATAC</pcr_primer_p1>
		<pcr_primer_p2>ATTCTTCATAAACTGCAATCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCCTTGGCTTCAGATATATAATACGACTTCTTCTGCTTCTTCGTGTCTATGTCGAGTTAGAGGAAATGCGCAAAAGAGAGCATTGAAACAAAGATCCGTATGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAAAAGAAGGAATGTGTGAGAGAGACGGAAAGGTGCAAAGTGCGTTTTGGCTCTCCCAGGCTTTTCATGAAGAAAATAGCACTTTCGATTTTTAAAGATTGCAGTTTATGAAGAAT</canonical_amplicon>
		<polymorphic_amplicon>GCCTTGGCTTCAGATATATAATACGACTTCTTCTGCTTCTTCGTGTCTATGTCGAGTTAGAGGAAATGCGCAAAAGAGAGCATTGAAACAAAGATCCGYATGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAAAAGAAGGAATGTGTGAGAGAGACGGAAAGGTGCAAAGTGCGTTTTGGCTCTCCCAGGCTTTTCATGAAGAAAATAGCACTTTCGATTTTTAAAGATTGCAGTTTATGAAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13605</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>89989</contig_pos>
        <strand>+</strand>
        <context>GTAGAGAAAA[A/C]AGAAGGAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACAAAGATCCGTATGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAA</left_flank>
        <right_flank>AGAAGGAATGTGTGAGAGAGACGGAAAGGTGCAAAGTGCGTTTTGGCTCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCTCCTCTGTATAATTCTCTTCGTCTCGTACATTCTTTCTTGGAATCCGGGCTACATCAGGGTCCAGACATGTGCTTTGATTTCTGACAACGTCTGCACTTTTCCACCTCTGATTTCTGCCCTAGCAATCAAAATGAGCTCTGAGTAACCAGGTTCTGTGTAGTGTCTCAAAATTAATCAAGTGGATACGTGCTCCTTCTTTAGTTCGCCTACGGCTGAGTAACCAGGTTCTGTGCTTCTTGGAATTAAGCTAGTGTTTTTCTATATGAGTTCATAATACAAACTAAAGAAGCTAAACGTCTGAAAATCAAAGAATGAAAATGCAGGCTCCTTTGTTAATGTATTTCGTTATGAGTGTGTTGCCTTGGCTTCAGATATATAATACGACTTCTTCTGCTTCTTCGTGTCTATGTCGAGTTAGAGGAAATGCGCAAAAGAGAGCATTGAAACAAAGATCCGTATGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAAAAGAAGGAATGTGTGAGAGAGACGGAAAGGTGCAAAGTGCGTTTTGGCTCTCCCAGGCTTTTCATGAAGAAAATAGCACTTTCGATTTTTAAAGATTGCAGTTTATGAAGAATCGGGAATGGAACAAGATTTACATATTTTAAAAAAACAGTGTGGTATTCGTTTCAAGGGAATACTACAGTACTCCACAGTTATGATATTTAGATTACGCCGATATTTAGATTAGCGAAATGAACGGTTGAAGTCCTTCATGCTTAAACATCACTGCTTTTTCGGGCTTTCCTTTCGACCAACGGAACAACTAAAGAATCTCCCTCGAGGTGATGACAGATGCTCTCCTCATCAAAATAAACCGGAGGATAATGAGGGAAAATAAGTAGAAGGGCGGTGTCCTCCGCCCCGGAAAATGGTTTATTATTTCCTCAAGAAGCTTCCCTCTTTCATTTTGTTCCGAGTATTTGCAGGTGCCCTCTTCCACCACTAGTAAAGTCTAGTTTTACT</canonical>
            <polymorphic>ATCCTCCTCTGTATAATTCTCTTCGTCTCGTACATTCTTTCTTGGAATCCGGGCTACATCAGGGTCCAGACATGTGCTTTGATTTCTGACAACGTCTGCACTTTTCCACCTCTGATTTCTGCCCTAGCAATCAAAATGAGCTCTGAGTAACCAGGTTCTGTGTAGTGTCTCAAAATTAATCAAGTGGATACGTGCTCCTTCTTTAGTTCGCCTACGGCTGAGTAACCAGGTTCTGTGCTTCTTGGAATTAAGCTAGTGTTTTTCTATATGAGTTCATAATACAAACTAAAGAAGCTAAACGTCTGAAAATCAAAGAATGAAAATGCAGGCTCCTTTGTTAATGTATTTCGTTATGAGTGTGTTGCCTTGGCTTCAGATATATAATACGACTTCTTCTGCTTCTTCGTGTCTATGTCGAGTTAGAGGAAATGCGCAAAAGAGAGCATTGAAACAAAGATCCGTATGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAAMAGAAGGAATGTGTGAGAGAGACGGAAAGGTGCAAAGTGCGTTTTGGCTCTCCCAGGCTTTTCATGAAGAAAATAGCACTTTCGATTTTTAAAGATTGCAGTTTATGAAGAATCGGGAATGGAACAAGATTTACATATTTTAAAAAAACAGTGTGGTATTCGTTTCAAGGGAATACTACAGTACTCCACAGTTATGATATTTAGATTACGCCGATATTTAGATTAGCGAAATGAACGGTTGAAGTCCTTCATGCTTAAACATCACTGCTTTTTCGGGCTTTCCTTTCGACCAACGGAACAACTAAAGAATCTCCCTCGAGGTGATGACAGATGCTCTCCTCATCAAAATAAACCGGAGGATAATGAGGGAAAATAAGTAGAAGGGCGGTGTCCTCCGCCCCGGAAAATGGTTTATTATTTCCTCAAGAAGCTTCCCTCTTTCATTTTGTTCCGAGTATTTGCAGGTGCCCTCTTCCACCACTAGTAAAGTCTAGTTTTACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCTTGGCTTCAGATATATAATAC</pcr_primer_p1>
		<pcr_primer_p2>ATTCTTCATAAACTGCAATCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCCTTGGCTTCAGATATATAATACGACTTCTTCTGCTTCTTCGTGTCTATGTCGAGTTAGAGGAAATGCGCAAAAGAGAGCATTGAAACAAAGATCCGTATGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAAAAGAAGGAATGTGTGAGAGAGACGGAAAGGTGCAAAGTGCGTTTTGGCTCTCCCAGGCTTTTCATGAAGAAAATAGCACTTTCGATTTTTAAAGATTGCAGTTTATGAAGAAT</canonical_amplicon>
		<polymorphic_amplicon>GCCTTGGCTTCAGATATATAATACGACTTCTTCTGCTTCTTCGTGTCTATGTCGAGTTAGAGGAAATGCGCAAAAGAGAGCATTGAAACAAAGATCCGTATGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAAMAGAAGGAATGTGTGAGAGAGACGGAAAGGTGCAAAGTGCGTTTTGGCTCTCCCAGGCTTTTCATGAAGAAAATAGCACTTTCGATTTTTAAAGATTGCAGTTTATGAAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13606</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>90129</contig_pos>
        <strand>+</strand>
        <context>TTACATATTT[A/T]AAAAAAACAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAGATTGCAGTTTATGAAGAATCGGGAATGGAACAAGATTTACATATTT</left_flank>
        <right_flank>AAAAAAACAGTGTGGTATTCGTTTCAAGGGAATACTACAGTACTCCACAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTGAGTAACCAGGTTCTGTGTAGTGTCTCAAAATTAATCAAGTGGATACGTGCTCCTTCTTTAGTTCGCCTACGGCTGAGTAACCAGGTTCTGTGCTTCTTGGAATTAAGCTAGTGTTTTTCTATATGAGTTCATAATACAAACTAAAGAAGCTAAACGTCTGAAAATCAAAGAATGAAAATGCAGGCTCCTTTGTTAATGTATTTCGTTATGAGTGTGTTGCCTTGGCTTCAGATATATAATACGACTTCTTCTGCTTCTTCGTGTCTATGTCGAGTTAGAGGAAATGCGCAAAAGAGAGCATTGAAACAAAGATCCGTATGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAAAAGAAGGAATGTGTGAGAGAGACGGAAAGGTGCAAAGTGCGTTTTGGCTCTCCCAGGCTTTTCATGAAGAAAATAGCACTTTCGATTTTTAAAGATTGCAGTTTATGAAGAATCGGGAATGGAACAAGATTTACATATTTTAAAAAAACAGTGTGGTATTCGTTTCAAGGGAATACTACAGTACTCCACAGTTATGATATTTAGATTACGCCGATATTTAGATTAGCGAAATGAACGGTTGAAGTCCTTCATGCTTAAACATCACTGCTTTTTCGGGCTTTCCTTTCGACCAACGGAACAACTAAAGAATCTCCCTCGAGGTGATGACAGATGCTCTCCTCATCAAAATAAACCGGAGGATAATGAGGGAAAATAAGTAGAAGGGCGGTGTCCTCCGCCCCGGAAAATGGTTTATTATTTCCTCAAGAAGCTTCCCTCTTTCATTTTGTTCCGAGTATTTGCAGGTGCCCTCTTCCACCACTAGTAAAGTCTAGTTTTACTGCCGCTATTTTCTTTTCAAAACTTCTTTCCTCTTTTCTGCTACTTTCTAATTCCTAGACTTCATGTGAACCTTCGCTTCAATGAGTCCCTCACACAAAGTTCAAAGGTTCATAGTATCATTTTTTTCTTTCTTCGTTGTC</canonical>
            <polymorphic>CTCTGAGTAACCAGGTTCTGTGTAGTGTCTCAAAATTAATCAAGTGGATACGTGCTCCTTCTTTAGTTCGCCTACGGCTGAGTAACCAGGTTCTGTGCTTCTTGGAATTAAGCTAGTGTTTTTCTATATGAGTTCATAATACAAACTAAAGAAGCTAAACGTCTGAAAATCAAAGAATGAAAATGCAGGCTCCTTTGTTAATGTATTTCGTTATGAGTGTGTTGCCTTGGCTTCAGATATATAATACGACTTCTTCTGCTTCTTCGTGTCTATGTCGAGTTAGAGGAAATGCGCAAAAGAGAGCATTGAAACAAAGATCCGTATGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAAAAGAAGGAATGTGTGAGAGAGACGGAAAGGTGCAAAGTGCGTTTTGGCTCTCCCAGGCTTTTCATGAAGAAAATAGCACTTTCGATTTTTAAAGATTGCAGTTTATGAAGAATCGGGAATGGAACAAGATTTACATATTTWAAAAAAACAGTGTGGTATTCGTTTCAAGGGAATACTACAGTACTCCACAGTTATGATATTTAGATTACGCCGATATTTAGATTAGCGAAATGAACGGTTGAAGTCCTTCATGCTTAAACATCACTGCTTTTTCGGGCTTTCCTTTCGACCAACGGAACAACTAAAGAATCTCCCTCGAGGTGATGACAGATGCTCTCCTCATCAAAATAAACCGGAGGATAATGAGGGAAAATAAGTAGAAGGGCGGTGTCCTCCGCCCCGGAAAATGGTTTATTATTTCCTCAAGAAGCTTCCCTCTTTCATTTTGTTCCGAGTATTTGCAGGTGCCCTCTTCCACCACTAGTAAAGTCTAGTTTTACTGCCGCTATTTTCTTTTCAAAACTTCTTTCCTCTTTTCTGCTACTTTCTAATTCCTAGACTTCATGTGAACCTTCGCTTCAATGAGTCCCTCACACAAAGTTCAAAGGTTCATAGTATCATTTTTTTCTTTCTTCGTTGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 449 51</canonical_bands>
                <polymorphic_bands>551 449</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>386 250 115 90 72 51 36</canonical_bands>
                <polymorphic_bands>386 250 166 90 72 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGCATGACACATGAGTAGTAGT</pcr_primer_p1>
		<pcr_primer_p2>TATCGGCGTAATCTAAATATCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGCATGACACATGAGTAGTAGTAGTAGAGAAAAAAGAAGGAATGTGTGAGAGAGACGGAAAGGTGCAAAGTGCGTTTTGGCTCTCCCAGGCTTTTCATGAAGAAAATAGCACTTTCGATTTTTAAAGATTGCAGTTTATGAAGAATCGGGAATGGAACAAGATTTACATATTTTAAAAAAACAGTGTGGTATTCGTTTCAAGGGAATACTACAGTACTCCACAGTTATGATATTTAGATTACGCCGATA</canonical_amplicon>
		<polymorphic_amplicon>TTGCATGACACATGAGTAGTAGTAGTAGAGAAAAAAGAAGGAATGTGTGAGAGAGACGGAAAGGTGCAAAGTGCGTTTTGGCTCTCCCAGGCTTTTCATGAAGAAAATAGCACTTTCGATTTTTAAAGATTGCAGTTTATGAAGAATCGGGAATGGAACAAGATTTACATATTTWAAAAAAACAGTGTGGTATTCGTTTCAAGGGAATACTACAGTACTCCACAGTTATGATATTTAGATTACGCCGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13607</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>94236</contig_pos>
        <strand>+</strand>
        <context>TTGATCAAAA[G/T]TTCACACACA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTCTATAAGCTGGATCAGAACACAATGGCTTCGTGGTCTTGATCAAAA</left_flank>
        <right_flank>TTCACACACAGAAATATGATCTTTGAATTTAGGCCAAGAACACGATTCGT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCGATTTTCATGCGATTTTAGTCAATTTTTCACTAGGAATAATAATAGAAAACTCGACGAAATGCGGTGAAAATCGAGAAAGTAAATCCGGAAAGTAAACATTTTTCTAGGTTACGGTAGTTGTCATTAAGGGACCTTCGGCCGCGGCCACCAAAGTTTCACTTCCACAGCTCCGATTCTTTTCATACAAGCATAATAATAATAAGAAATTAGAAAAGTAGTCCTTCCTGTAATACTCCTGTTCTGATCCTAATTTTCGAAAAGGTGGAGAAGTACTGTACTTTTCAAATCCCTAGAATAGAAACTCTGGAACCAAGAACTCCTCTAATACAAAAATAATATCATTTGGATCAGTCTGACCACCTGCACAATGATCACAGCAAATGCTCTAAAAGCAAAGAACACAGTGTGCCAGAAAATAAAAATCTTTATTTTTCCAGTAATTTTTTTTCTATAAGCTGGATCAGAACACAATGGCTTCGTGGTCTTGATCAAAATTTCACACACAGAAATATGATCTTTGAATTTAGGCCAAGAACACGATTCGTTGTGATATTATCTAACAGATACTCTTTTGCTCGTCGGTGAGGGGAGAATTACACTTCTAAGAGAGTCTAGGCGAGAAGAAATCCCATGATAATAGTTTCCAATTGATAATATTACATCGATCACCCACCTACACTACAAACTTTCCTCTTTCTCTCTATCTGTCTGTTCCTTCTCCCACCTTCTATAGGTTCTTCTTGTGCTATCATTGTACTCTAGTTTCTTTCTCTTGTTCATGATGTCACCTTCACTGTTACCATCTAATTTCTCATTCATCTCGATTCTCTCCGATTCTCGATACAGTGTCTCCATCTCCACGGCGCGCGCCTACGACTGTTTGCTCAACCGATCACAGTTTGTTTAATGCTGCTCTCTTTCTCCGCTGGCGGCCCGGCCCATTCCGTATGTCTGGGAGCAAAATAACAGAATTCCCTGACTGACTGCGTCTGGTG</canonical>
            <polymorphic>TCTCGATTTTCATGCGATTTTAGTCAATTTTTCACTAGGAATAATAATAGAAAACTCGACGAAATGCGGTGAAAATCGAGAAAGTAAATCCGGAAAGTAAACATTTTTCTAGGTTACGGTAGTTGTCATTAAGGGACCTTCGGCCGCGGCCACCAAAGTTTCACTTCCACAGCTCCGATTCTTTTCATACAAGCATAATAATAATAAGAAATTAGAAAAGTAGTCCTTCCTGTAATACTCCTGTTCTGATCCTAATTTTCGAAAAGGTGGAGAAGTACTGTACTTTTCAAATCCCTAGAATAGAAACTCTGGAACCAAGAACTCCTCTAATACAAAAATAATATCATTTGGATCAGTCTGACCACCTGCACAATGATCACAGCAAATGCTCTAAAAGCAAAGAACACAGTGTGCCAGAAAATAAAAATCTTTATTTTTCCAGTAATTTTTTTTCTATAAGCTGGATCAGAACACAATGGCTTCGTGGTCTTGATCAAAAKTTCACACACAGAAATATGATCTTTGAATTTAGGCCAAGAACACGATTCGTTGTGATATTATCTAACAGATACTCTTTTGCTCGTCGGTGAGGGGAGAATTACACTTCTAAGAGAGTCTAGGCGAGAAGAAATCCCATGATAATAGTTTCCAATTGATAATATTACATCGATCACCCACCTACACTACAAACTTTCCTCTTTCTCTCTATCTGTCTGTTCCTTCTCCCACCTTCTATAGGTTCTTCTTGTGCTATCATTGTACTCTAGTTTCTTTCTCTTGTTCATGATGTCACCTTCACTGTTACCATCTAATTTCTCATTCATCTCGATTCTCTCCGATTCTCGATACAGTGTCTCCATCTCCACGGCGCGCGCCTACGACTGTTTGCTCAACCGATCACAGTTTGTTTAATGCTGCTCTCTTTCTCCGCTGGCGGCCCGGCCCATTCCGTATGTCTGGGAGCAAAATAACAGAATTCCCTGACTGACTGCGTCTGGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>497 449 28 26</canonical_bands>
                <polymorphic_bands>525 449 26</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>190 184 164 160 71 54 54 44 28 26 25</canonical_bands>
                <polymorphic_bands>190 184 164 160 82 71 54 44 26 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGCTCTAAAAGCAAAGAAC</pcr_primer_p1>
		<pcr_primer_p2>TCTTCTCGCCTAGACTCTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAATGCTCTAAAAGCAAAGAACACAGTGTGCCAGAAAATAAAAATCTTTATTTTTCCAGTAATTTTTTTTCTATAAGCTGGATCAGAACACAATGGCTTCGTGGTCTTGATCAAAATTTCACACACAGAAATATGATCTTTGAATTTAGGCCAAGAACACGATTCGTTGTGATATTATCTAACAGATACTCTTTTGCTCGTCGGTGAGGGGAGAATTACACTTCTAAGAGAGTCTAGGCGAGAAGA</canonical_amplicon>
		<polymorphic_amplicon>AAATGCTCTAAAAGCAAAGAACACAGTGTGCCAGAAAATAAAAATCTTTATTTTTCCAGTAATTTTTTTTCTATAAGCTGGATCAGAACACAATGGCTTCGTGGTCTTGATCAAAAKTTCACACACAGAAATATGATCTTTGAATTTAGGCCAAGAACACGATTCGTTGTGATATTATCTAACAGATACTCTTTTGCTCGTCGGTGAGGGGAGAATTACACTTCTAAGAGAGTCTAGGCGAGAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13608</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>94289</contig_pos>
        <strand>+</strand>
        <context>CGATTCGTTG[G/T]GATATTATCT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CACACACAGAAATATGATCTTTGAATTTAGGCCAAGAACACGATTCGTTG</left_flank>
        <right_flank>GATATTATCTAACAGATACTCTTTTGCTCGTCGGTGAGGGGAGAATTACA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCGACGAAATGCGGTGAAAATCGAGAAAGTAAATCCGGAAAGTAAACATTTTTCTAGGTTACGGTAGTTGTCATTAAGGGACCTTCGGCCGCGGCCACCAAAGTTTCACTTCCACAGCTCCGATTCTTTTCATACAAGCATAATAATAATAAGAAATTAGAAAAGTAGTCCTTCCTGTAATACTCCTGTTCTGATCCTAATTTTCGAAAAGGTGGAGAAGTACTGTACTTTTCAAATCCCTAGAATAGAAACTCTGGAACCAAGAACTCCTCTAATACAAAAATAATATCATTTGGATCAGTCTGACCACCTGCACAATGATCACAGCAAATGCTCTAAAAGCAAAGAACACAGTGTGCCAGAAAATAAAAATCTTTATTTTTCCAGTAATTTTTTTTCTATAAGCTGGATCAGAACACAATGGCTTCGTGGTCTTGATCAAAATTTCACACACAGAAATATGATCTTTGAATTTAGGCCAAGAACACGATTCGTTGTGATATTATCTAACAGATACTCTTTTGCTCGTCGGTGAGGGGAGAATTACACTTCTAAGAGAGTCTAGGCGAGAAGAAATCCCATGATAATAGTTTCCAATTGATAATATTACATCGATCACCCACCTACACTACAAACTTTCCTCTTTCTCTCTATCTGTCTGTTCCTTCTCCCACCTTCTATAGGTTCTTCTTGTGCTATCATTGTACTCTAGTTTCTTTCTCTTGTTCATGATGTCACCTTCACTGTTACCATCTAATTTCTCATTCATCTCGATTCTCTCCGATTCTCGATACAGTGTCTCCATCTCCACGGCGCGCGCCTACGACTGTTTGCTCAACCGATCACAGTTTGTTTAATGCTGCTCTCTTTCTCCGCTGGCGGCCCGGCCCATTCCGTATGTCTGGGAGCAAAATAACAGAATTCCCTGACTGACTGCGTCTGGTGATCCGCTCCCATCTCTCTTCCCGCCTGTTTCACTCTCACTATCTAGGTCTCCT</canonical>
            <polymorphic>ACTCGACGAAATGCGGTGAAAATCGAGAAAGTAAATCCGGAAAGTAAACATTTTTCTAGGTTACGGTAGTTGTCATTAAGGGACCTTCGGCCGCGGCCACCAAAGTTTCACTTCCACAGCTCCGATTCTTTTCATACAAGCATAATAATAATAAGAAATTAGAAAAGTAGTCCTTCCTGTAATACTCCTGTTCTGATCCTAATTTTCGAAAAGGTGGAGAAGTACTGTACTTTTCAAATCCCTAGAATAGAAACTCTGGAACCAAGAACTCCTCTAATACAAAAATAATATCATTTGGATCAGTCTGACCACCTGCACAATGATCACAGCAAATGCTCTAAAAGCAAAGAACACAGTGTGCCAGAAAATAAAAATCTTTATTTTTCCAGTAATTTTTTTTCTATAAGCTGGATCAGAACACAATGGCTTCGTGGTCTTGATCAAAATTTCACACACAGAAATATGATCTTTGAATTTAGGCCAAGAACACGATTCGTTGKGATATTATCTAACAGATACTCTTTTGCTCGTCGGTGAGGGGAGAATTACACTTCTAAGAGAGTCTAGGCGAGAAGAAATCCCATGATAATAGTTTCCAATTGATAATATTACATCGATCACCCACCTACACTACAAACTTTCCTCTTTCTCTCTATCTGTCTGTTCCTTCTCCCACCTTCTATAGGTTCTTCTTGTGCTATCATTGTACTCTAGTTTCTTTCTCTTGTTCATGATGTCACCTTCACTGTTACCATCTAATTTCTCATTCATCTCGATTCTCTCCGATTCTCGATACAGTGTCTCCATCTCCACGGCGCGCGCCTACGACTGTTTGCTCAACCGATCACAGTTTGTTTAATGCTGCTCTCTTTCTCCGCTGGCGGCCCGGCCCATTCCGTATGTCTGGGAGCAAAATAACAGAATTCCCTGACTGACTGCGTCTGGTGATCCGCTCCCATCTCTCTTCCCGCCTGTTTCACTCTCACTATCTAGGTCTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>100 100 95 81 70 60 55 45 42 35 35 34 32 27 22 18 18 15 14 13 12 12 11 9 6 6 6 6 6 5 4 2 2 2</canonical_bands>
                <polymorphic_bands>100 100 95 81 70 60 55 47 45 42 35 34 32 27 22 18 18 15 14 13 12 11 9 6 6 6 6 6 5 4 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTATAAGCTGGATCAGAACAC</pcr_primer_p1>
		<pcr_primer_p2>AAAGAGGAAAGTTTGTAGTGTAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTATAAGCTGGATCAGAACACAATGGCTTCGTGGTCTTGATCAAAATTTCACACACAGAAATATGATCTTTGAATTTAGGCCAAGAACACGATTCGTTGTGATATTATCTAACAGATACTCTTTTGCTCGTCGGTGAGGGGAGAATTACACTTCTAAGAGAGTCTAGGCGAGAAGAAATCCCATGATAATAGTTTCCAATTGATAATATTACATCGATCACCCACCTACACTACAAACTTTCCTCTTT</canonical_amplicon>
		<polymorphic_amplicon>TTCTATAAGCTGGATCAGAACACAATGGCTTCGTGGTCTTGATCAAAATTTCACACACAGAAATATGATCTTTGAATTTAGGCCAAGAACACGATTCGTTGKGATATTATCTAACAGATACTCTTTTGCTCGTCGGTGAGGGGAGAATTACACTTCTAAGAGAGTCTAGGCGAGAAGAAATCCCATGATAATAGTTTCCAATTGATAATATTACATCGATCACCCACCTACACTACAAACTTTCCTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13609</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>94798</contig_pos>
        <strand>+</strand>
        <context>CTAGTCTCTG[A/G]ACTTATACTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTCTCTTCCCGCCTGTTTCACTCTCACTATCTAGGTCTCCTAGTCTCTG</left_flank>
        <right_flank>ACTTATACTTCACTCATCAATACTACTATACCATCATCATCATCCGCATC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACAGATACTCTTTTGCTCGTCGGTGAGGGGAGAATTACACTTCTAAGAGAGTCTAGGCGAGAAGAAATCCCATGATAATAGTTTCCAATTGATAATATTACATCGATCACCCACCTACACTACAAACTTTCCTCTTTCTCTCTATCTGTCTGTTCCTTCTCCCACCTTCTATAGGTTCTTCTTGTGCTATCATTGTACTCTAGTTTCTTTCTCTTGTTCATGATGTCACCTTCACTGTTACCATCTAATTTCTCATTCATCTCGATTCTCTCCGATTCTCGATACAGTGTCTCCATCTCCACGGCGCGCGCCTACGACTGTTTGCTCAACCGATCACAGTTTGTTTAATGCTGCTCTCTTTCTCCGCTGGCGGCCCGGCCCATTCCGTATGTCTGGGAGCAAAATAACAGAATTCCCTGACTGACTGCGTCTGGTGATCCGCTCCCATCTCTCTTCCCGCCTGTTTCACTCTCACTATCTAGGTCTCCTAGTCTCTGGACTTATACTTCACTCATCAATACTACTATACCATCATCATCATCCGCATCGTCATCATCACAAGCCTAATTTTTGGTAGTATTACTGTCTGTCTATGTCGATTTGAAAAAACAAACGACACCGTGTTTTAAACACTTCATTCTGAAATGGATGTGGCTCTTCTTCTAGACTTCATGACCGCCTCAAATGATGTCTTCGCAGCGATGGAGATGAGCCAAAAACAGTCACCGCCTGGTCTGTTCAAAATCGGTAAGTCTGTCTAGAAAAGAGCACTTCTTATCTATACCCGCCGTCTACAATTTGCAGCCAAAAACGAGCCGAGCAGCTCTTCGAATTCGCAGCCAGGCACACCAGCGATGAGTGATCGAAGAGCGGTGAGTTTCTTTTTCTTTAACAGTGGATTTCATTTTTACCAAAGATTTTGGTTCAGGTCCCAGCATGCGCCATTTGTGGTACCGATTCCACAGGCATTCATTTTGGAGTGGACGCATGTGCCGCAT</canonical>
            <polymorphic>TAACAGATACTCTTTTGCTCGTCGGTGAGGGGAGAATTACACTTCTAAGAGAGTCTAGGCGAGAAGAAATCCCATGATAATAGTTTCCAATTGATAATATTACATCGATCACCCACCTACACTACAAACTTTCCTCTTTCTCTCTATCTGTCTGTTCCTTCTCCCACCTTCTATAGGTTCTTCTTGTGCTATCATTGTACTCTAGTTTCTTTCTCTTGTTCATGATGTCACCTTCACTGTTACCATCTAATTTCTCATTCATCTCGATTCTCTCCGATTCTCGATACAGTGTCTCCATCTCCACGGCGCGCGCCTACGACTGTTTGCTCAACCGATCACAGTTTGTTTAATGCTGCTCTCTTTCTCCGCTGGCGGCCCGGCCCATTCCGTATGTCTGGGAGCAAAATAACAGAATTCCCTGACTGACTGCGTCTGGTGATCCGCTCCCATCTCTCTTCCCGCCTGTTTCACTCTCACTATCTAGGTCTCCTAGTCTCTGRACTTATACTTCACTCATCAATACTACTATACCATCATCATCATCCGCATCGTCATCATCACAAGCCTAATTTTTGGTAGTATTACTGTCTGTCTATGTCGATTTGAAAAAACAAACGACACCGTGTTTTAAACACTTCATTCTGAAATGGATGTGGCTCTTCTTCTAGACTTCATGACCGCCTCAAATGATGTCTTCGCAGCGATGGAGATGAGCCAAAAACAGTCACCGCCTGGTCTGTTCAAAATCGGTAAGTCTGTCTAGAAAAGAGCACTTCTTATCTATACCCGCCGTCTACAATTTGCAGCCAAAAACGAGCCGAGCAGCTCTTCGAATTCGCAGCCAGGCACACCAGCGATGAGTGATCGAAGAGCGGTGAGTTTCTTTTTCTTTAACAGTGGATTTCATTTTTACCAAAGATTTTGGTTCAGGTCCCAGCATGCGCCATTTGTGGTACCGATTCCACAGGCATTCATTTTGGAGTGGACGCATGTGCCGCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>240 221 217 168 87 42 17 8</canonical_bands>
                <polymorphic_bands>385 240 221 87 42 17 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAACAGAATTCCCTGACTGACT</pcr_primer_p1>
		<pcr_primer_p2>ATCCATTTCAGAATGAAGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATAACAGAATTCCCTGACTGACTGCGTCTGGTGATCCGCTCCCATCTCTCTTCCCGCCTGTTTCACTCTCACTATCTAGGTCTCCTAGTCTCTGGACTTATACTTCACTCATCAATACTACTATACCATCATCATCATCCGCATCGTCATCATCACAAGCCTAATTTTTGGTAGTATTACTGTCTGTCTATGTCGATTTGAAAAAACAAACGACACCGTGTTTTAAACACTTCATTCTGAAATGGAT</canonical_amplicon>
		<polymorphic_amplicon>ATAACAGAATTCCCTGACTGACTGCGTCTGGTGATCCGCTCCCATCTCTCTTCCCGCCTGTTTCACTCTCACTATCTAGGTCTCCTAGTCTCTGRACTTATACTTCACTCATCAATACTACTATACCATCATCATCATCCGCATCGTCATCATCACAAGCCTAATTTTTGGTAGTATTACTGTCTGTCTATGTCGATTTGAAAAAACAAACGACACCGTGTTTTAAACACTTCATTCTGAAATGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13610</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>97203</contig_pos>
        <strand>+</strand>
        <context>CGGATGGGAA[A/G]AGAGATGCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAATCAAATGCTGGATGTGGAGAGCGTAAATGTGTCTCCGGATGGGAA</left_flank>
        <right_flank>AGAGATGCAGAAGCTGAACAGGGCCCGATGCCAGTTTCTGTTCCAGAAGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTAAGCTTTATTGTTGAATGAACTTGATTTCGGCAAGCCAGATAGTTTAATTTATAGTCTCTTCTTGCCGTCGTTCACCCATGCAATGGATACGATCGGACAAAAAATGAAGAATTTGAATGTCTCGGATACCGAGCTTACTGTATTGTTGGGTCTGGTTCTACTGGATCCTGGGATTTATGGGATACAGGAATCAACACGAAGATTTCTGAAAGGTGTTCGTGATCAGTTGATTCATGATGTTTACATGTATTACGAAGATGAAATGGCTTCTGAATACGACCCAGAAATTCGGATGGCTGACCTTTTCATGCTTGTTGCAGCTATTAAGGTAATGGTCTTGTTTTTCATACTATTCTATGACAAATATTCACAGATTCACTCTATCAAAACATCTGAAAACATGCATATGCTGCGAGTATTCGATTTGATCCCTGCTGACGCTTGTTTCAATCAAATGCTGGATGTGGAGAGCGTAAATGTGTCTCCGGATGGGAAGAGAGATGCAGAAGCTGAACAGGGCCCGATGCCAGTTTCTGTTCCAGAAGCAGCACGAGTAGATTCTGCATTTCCATACGATCATGATGATGAAAGCCCACCTGTACTCGAAAGAAACTGTGATGAGCCAATTACGCCCTAACTGTGATTGTTAGAACTTCCCGTTTTTAAAGTTACCCCCGTACCTAGTAATGTATTTTCAATTCTCGCTTTCAAGTCGTTATACCTCTTCCCGGTTTTTCTATGGTTCTTTTACGACGATGTTTATTGTGTGCCTATTTAATATTGTTGACATTGACACATATTTTTTTCTCGAAAAGTTCTCAAAATCGTACAGGATATTGCATGTGACGACGCGATTAATTATTGCTTCGAACTACCATAACCTCGTCATATCTTACTTCTGAAGATCTCTATTAAATTATGGGTGATTTAAAAACCTCTCTTCTCATTTCGTTTTTACACCTTCACCTGTCACTTTGATATGTGCTTTTTCGATTT</canonical>
            <polymorphic>AGTAAGCTTTATTGTTGAATGAACTTGATTTCGGCAAGCCAGATAGTTTAATTTATAGTCTCTTCTTGCCGTCGTTCACCCATGCAATGGATACGATCGGACAAAAAATGAAGAATTTGAATGTCTCGGATACCGAGCTTACTGTATTGTTGGGTCTGGTTCTACTGGATCCTGGGATTTATGGGATACAGGAATCAACACGAAGATTTCTGAAAGGTGTTCGTGATCAGTTGATTCATGATGTTTACATGTATTACGAAGATGAAATGGCTTCTGAATACGACCCAGAAATTCGGATGGCTGACCTTTTCATGCTTGTTGCAGCTATTAAGGTAATGGTCTTGTTTTTCATACTATTCTATGACAAATATTCACAGATTCACTCTATCAAAACATCTGAAAACATGCATATGCTGCGAGTATTCGATTTGATCCCTGCTGACGCTTGTTTCAATCAAATGCTGGATGTGGAGAGCGTAAATGTGTCTCCGGATGGGAARAGAGATGCAGAAGCTGAACAGGGCCCGATGCCAGTTTCTGTTCCAGAAGCAGCACGAGTAGATTCTGCATTTCCATACGATCATGATGATGAAAGCCCACCTGTACTCGAAAGAAACTGTGATGAGCCAATTACGCCCTAACTGTGATTGTTAGAACTTCCCGTTTTTAAAGTTACCCCCGTACCTAGTAATGTATTTTCAATTCTCGCTTTCAAGTCGTTATACCTCTTCCCGGTTTTTCTATGGTTCTTTTACGACGATGTTTATTGTGTGCCTATTTAATATTGTTGACATTGACACATATTTTTTTCTCGAAAAGTTCTCAAAATCGTACAGGATATTGCATGTGACGACGCGATTAATTATTGCTTCGAACTACCATAACCTCGTCATATCTTACTTCTGAAGATCTCTATTAAATTATGGGTGATTTAAAAACCTCTCTTCTCATTTCGTTTTTACACCTTCACCTGTCACTTTGATATGTGCTTTTTCGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGTAATGGTCTTGTTTTTCAT</pcr_primer_p1>
		<pcr_primer_p2>GTATGGAAATGCAGAATCTACTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGGTAATGGTCTTGTTTTTCATACTATTCTATGACAAATATTCACAGATTCACTCTATCAAAACATCTGAAAACATGCATATGCTGCGAGTATTCGATTTGATCCCTGCTGACGCTTGTTTCAATCAAATGCTGGATGTGGAGAGCGTAAATGTGTCTCCGGATGGGAAGAGAGATGCAGAAGCTGAACAGGGCCCGATGCCAGTTTCTGTTCCAGAAGCAGCACGAGTAGATTCTGCATTTCCATAC</canonical_amplicon>
		<polymorphic_amplicon>AAGGTAATGGTCTTGTTTTTCATACTATTCTATGACAAATATTCACAGATTCACTCTATCAAAACATCTGAAAACATGCATATGCTGCGAGTATTCGATTTGATCCCTGCTGACGCTTGTTTCAATCAAATGCTGGATGTGGAGAGCGTAAATGTGTCTCCGGATGGGAARAGAGATGCAGAAGCTGAACAGGGCCCGATGCCAGTTTCTGTTCCAGAAGCAGCACGAGTAGATTCTGCATTTCCATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13611</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>97291</contig_pos>
        <strand>+</strand>
        <context>CGATCATGAT[A/G]ATGAAAGCCC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGTTCCAGAAGCAGCACGAGTAGATTCTGCATTTCCATACGATCATGAT</left_flank>
        <right_flank>ATGAAAGCCCACCTGTACTCGAAAGAAACTGTGATGAGCCAATTACGCCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATACGATCGGACAAAAAATGAAGAATTTGAATGTCTCGGATACCGAGCTTACTGTATTGTTGGGTCTGGTTCTACTGGATCCTGGGATTTATGGGATACAGGAATCAACACGAAGATTTCTGAAAGGTGTTCGTGATCAGTTGATTCATGATGTTTACATGTATTACGAAGATGAAATGGCTTCTGAATACGACCCAGAAATTCGGATGGCTGACCTTTTCATGCTTGTTGCAGCTATTAAGGTAATGGTCTTGTTTTTCATACTATTCTATGACAAATATTCACAGATTCACTCTATCAAAACATCTGAAAACATGCATATGCTGCGAGTATTCGATTTGATCCCTGCTGACGCTTGTTTCAATCAAATGCTGGATGTGGAGAGCGTAAATGTGTCTCCGGATGGGAAGAGAGATGCAGAAGCTGAACAGGGCCCGATGCCAGTTTCTGTTCCAGAAGCAGCACGAGTAGATTCTGCATTTCCATACGATCATGATGATGAAAGCCCACCTGTACTCGAAAGAAACTGTGATGAGCCAATTACGCCCTAACTGTGATTGTTAGAACTTCCCGTTTTTAAAGTTACCCCCGTACCTAGTAATGTATTTTCAATTCTCGCTTTCAAGTCGTTATACCTCTTCCCGGTTTTTCTATGGTTCTTTTACGACGATGTTTATTGTGTGCCTATTTAATATTGTTGACATTGACACATATTTTTTTCTCGAAAAGTTCTCAAAATCGTACAGGATATTGCATGTGACGACGCGATTAATTATTGCTTCGAACTACCATAACCTCGTCATATCTTACTTCTGAAGATCTCTATTAAATTATGGGTGATTTAAAAACCTCTCTTCTCATTTCGTTTTTACACCTTCACCTGTCACTTTGATATGTGCTTTTTCGATTTGTAATATACAATTTTTTATGATAAATTATTTGCCATTCATTAGATTTTACATGAAGAAGAGATGAAGGCGATTCGGAATGGATGGGCG</canonical>
            <polymorphic>GGATACGATCGGACAAAAAATGAAGAATTTGAATGTCTCGGATACCGAGCTTACTGTATTGTTGGGTCTGGTTCTACTGGATCCTGGGATTTATGGGATACAGGAATCAACACGAAGATTTCTGAAAGGTGTTCGTGATCAGTTGATTCATGATGTTTACATGTATTACGAAGATGAAATGGCTTCTGAATACGACCCAGAAATTCGGATGGCTGACCTTTTCATGCTTGTTGCAGCTATTAAGGTAATGGTCTTGTTTTTCATACTATTCTATGACAAATATTCACAGATTCACTCTATCAAAACATCTGAAAACATGCATATGCTGCGAGTATTCGATTTGATCCCTGCTGACGCTTGTTTCAATCAAATGCTGGATGTGGAGAGCGTAAATGTGTCTCCGGATGGGAAGAGAGATGCAGAAGCTGAACAGGGCCCGATGCCAGTTTCTGTTCCAGAAGCAGCACGAGTAGATTCTGCATTTCCATACGATCATGATRATGAAAGCCCACCTGTACTCGAAAGAAACTGTGATGAGCCAATTACGCCCTAACTGTGATTGTTAGAACTTCCCGTTTTTAAAGTTACCCCCGTACCTAGTAATGTATTTTCAATTCTCGCTTTCAAGTCGTTATACCTCTTCCCGGTTTTTCTATGGTTCTTTTACGACGATGTTTATTGTGTGCCTATTTAATATTGTTGACATTGACACATATTTTTTTCTCGAAAAGTTCTCAAAATCGTACAGGATATTGCATGTGACGACGCGATTAATTATTGCTTCGAACTACCATAACCTCGTCATATCTTACTTCTGAAGATCTCTATTAAATTATGGGTGATTTAAAAACCTCTCTTCTCATTTCGTTTTTACACCTTCACCTGTCACTTTGATATGTGCTTTTTCGATTTGTAATATACAATTTTTTATGATAAATTATTTGCCATTCATTAGATTTTACATGAAGAAGAGATGAAGGCGATTCGGAATGGATGGGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGCGAGTATTCGATTTGAT</pcr_primer_p1>
		<pcr_primer_p2>GGGAAGTTCTAACAATCACAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTGCGAGTATTCGATTTGATCCCTGCTGACGCTTGTTTCAATCAAATGCTGGATGTGGAGAGCGTAAATGTGTCTCCGGATGGGAAGAGAGATGCAGAAGCTGAACAGGGCCCGATGCCAGTTTCTGTTCCAGAAGCAGCACGAGTAGATTCTGCATTTCCATACGATCATGATGATGAAAGCCCACCTGTACTCGAAAGAAACTGTGATGAGCCAATTACGCCCTAACTGTGATTGTTAGAACTTCCC</canonical_amplicon>
		<polymorphic_amplicon>CTGCGAGTATTCGATTTGATCCCTGCTGACGCTTGTTTCAATCAAATGCTGGATGTGGAGAGCGTAAATGTGTCTCCGGATGGGAAGAGAGATGCAGAAGCTGAACAGGGCCCGATGCCAGTTTCTGTTCCAGAAGCAGCACGAGTAGATTCTGCATTTCCATACGATCATGATRATGAAAGCCCACCTGTACTCGAAAGAAACTGTGATGAGCCAATTACGCCCTAACTGTGATTGTTAGAACTTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13612</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>98429</contig_pos>
        <strand>+</strand>
        <context>TGAATTTAGC[A/T]CCACTAAACA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAGATGAGCTGACAAACAACACGTGTTCAGAGTAGAATCTGAATTTAGC</left_flank>
        <right_flank>CCACTAAACAACGCGCGCACCGTTATTTCGGAGCATCGTACTGAAGAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAATGAGCCACTGGGATGTTGGAAGCTTTGATTCGGCGGTTTTCTGAAACATACACATTTTTCGGCTGAAAGTTTCTCTGGTTTTCAGTTTCTGTGTTGGGGGAATTATATCGCGAGTTTCTAAAACTGCCAGCTCACTAAATTGTAGTTATTGACAAAATAGGAAAAAAAGAGGAAAGCTTTCTACTGAAAAATCGATTTGCTTGAAAAATGATTTTTTTACGAAGTCTTTAACCCGAAAAAGAACCTATCTAATATTCGTTCAGGGTTTGTCCCAAACTTACGTTTCCTTTTGGTACGTTTCCCCGTTGAGTGACGTTTTGGCTGAACTGCTTGTTGGCGACGGCCATACGCTGTTTAGGAGCCATTCTGAAAAAAGGGCAGAGATTCTAGAAGCACCGGAATCGAATGAAATTGGAAAAAAAGTGACAATATCAGAAAACAACCGGGAGATGAGCTGACAAACAACACGTGTTCAGAGTAGAATCTGAATTTAGCTCCACTAAACAACGCGCGCACCGTTATTTCGGAGCATCGTACTGAAGAAATGTTGTGAAGATTGTGTCACAAAATGTATTTACAAAGTTTTTATCGATAAGAAAACAGAAATTAGTGTATTAAATTGTGTTGTTCAAATGTGATTCTTTATGAATTCGAATTCAAGAGCCGAGTGATTTCCTCCTCTAAATCGAGAGGGTTGACAGAATGCGAATATCTGGAAAGTGTTCAATCATCAATTTTTTGTTGTTCAATAACAATGAATTACCGTGCAACCACATGACCATTTTTGTCCACTAGAAACTTCGAAAAGTTCCAAGGAATATCAGATGCTAGTGAAGACCCTCGTTCGTTCTTCAAGAACTTCCACAGCGGATGCGTGTTTGGACCATTGACTTCTATCTGAAATTTAGGAAGAATTTGCAGCAATTTTCGTTATAAATACCTTTGAATACATATCAGGAGTATAAGTATAGCTGCTTTTTACAAAATCCAAAATCT</canonical>
            <polymorphic>CCAATGAGCCACTGGGATGTTGGAAGCTTTGATTCGGCGGTTTTCTGAAACATACACATTTTTCGGCTGAAAGTTTCTCTGGTTTTCAGTTTCTGTGTTGGGGGAATTATATCGCGAGTTTCTAAAACTGCCAGCTCACTAAATTGTAGTTATTGACAAAATAGGAAAAAAAGAGGAAAGCTTTCTACTGAAAAATCGATTTGCTTGAAAAATGATTTTTTTACGAAGTCTTTAACCCGAAAAAGAACCTATCTAATATTCGTTCAGGGTTTGTCCCAAACTTACGTTTCCTTTTGGTACGTTTCCCCGTTGAGTGACGTTTTGGCTGAACTGCTTGTTGGCGACGGCCATACGCTGTTTAGGAGCCATTCTGAAAAAAGGGCAGAGATTCTAGAAGCACCGGAATCGAATGAAATTGGAAAAAAAGTGACAATATCAGAAAACAACCGGGAGATGAGCTGACAAACAACACGTGTTCAGAGTAGAATCTGAATTTAGCWCCACTAAACAACGCGCGCACCGTTATTTCGGAGCATCGTACTGAAGAAATGTTGTGAAGATTGTGTCACAAAATGTATTTACAAAGTTTTTATCGATAAGAAAACAGAAATTAGTGTATTAAATTGTGTTGTTCAAATGTGATTCTTTATGAATTCGAATTCAAGAGCCGAGTGATTTCCTCCTCTAAATCGAGAGGGTTGACAGAATGCGAATATCTGGAAAGTGTTCAATCATCAATTTTTTGTTGTTCAATAACAATGAATTACCGTGCAACCACATGACCATTTTTGTCCACTAGAAACTTCGAAAAGTTCCAAGGAATATCAGATGCTAGTGAAGACCCTCGTTCGTTCTTCAAGAACTTCCACAGCGGATGCGTGTTTGGACCATTGACTTCTATCTGAAATTTAGGAAGAATTTGCAGCAATTTTCGTTATAAATACCTTTGAATACATATCAGGAGTATAAGTATAGCTGCTTTTTACAAAATCCAAAATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>477 278 108 46 40 26 25</canonical_bands>
                <polymorphic_bands>517 278 108 46 26 25</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>308 169 145 93 68 46 40 40 25 22 18 18 8</canonical_bands>
                <polymorphic_bands>308 209 145 93 68 46 40 25 22 18 18 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCGAATGAAATTGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TCATAAAGAATCACATTTGAACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATCGAATGAAATTGGAAAAAAAGTGACAATATCAGAAAACAACCGGGAGATGAGCTGACAAACAACACGTGTTCAGAGTAGAATCTGAATTTAGCTCCACTAAACAACGCGCGCACCGTTATTTCGGAGCATCGTACTGAAGAAATGTTGTGAAGATTGTGTCACAAAATGTATTTACAAAGTTTTTATCGATAAGAAAACAGAAATTAGTGTATTAAATTGTGTTGTTCAAATGTGATTCTTTATGA</canonical_amplicon>
		<polymorphic_amplicon>AATCGAATGAAATTGGAAAAAAAGTGACAATATCAGAAAACAACCGGGAGATGAGCTGACAAACAACACGTGTTCAGAGTAGAATCTGAATTTAGCWCCACTAAACAACGCGCGCACCGTTATTTCGGAGCATCGTACTGAAGAAATGTTGTGAAGATTGTGTCACAAAATGTATTTACAAAGTTTTTATCGATAAGAAAACAGAAATTAGTGTATTAAATTGTGTTGTTCAAATGTGATTCTTTATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13637</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>114374</contig_pos>
        <strand>+</strand>
        <context>TAGACTATGT[C/G]TTGCATATTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTCTCTCATCTTCTAAACCAAGCAGCAAATCCAAAAAGCATAGACTATGT</left_flank>
        <right_flank>TTGCATATTAGGAAGATCCAGAAAGATATCATCTCAGCAGGAAATCTTCA</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCAAAACGATCCGTCCATTGAATATGGGCACTTTTCATGGTTCCGTTCTGTAAAAATGTACAGCTTTAAAGCTGGAGCTTTAGAATTCAAATAATGCATCAGTAAACTGGCCAAGTTTCAGATTATTTGATCAACTTTGAGCTGAATTTTCGTTTGTCAAAGTTGCTTCATCCCATGAAAATCAAAAGAAACATTAGGTCGTTCATCTTTCGACAATCATGAAAATACCTAGACTTGAGGAAACGCTTTGAAAATTTCAGTAGCTTTGAATCAGACTTAAAATCATATTTCTACCAATTTTCGTGCTTCCAAGGTATTTATGTCTAAAGATATACTCGTTTTTATCAGTCCGGGTGATTGTGCGCCACCCTGTAAAACTTGTTCAAACCATAAAGGAAATGATAAGAGCAGAAAACTCCTAACTTTCTGAAAACGCGTTCTTTTGTTCTCTCTCATCTTCTAAACCAAGCAGCAAATCCAAAAAGCATAGACTATGTCTTGCATATTAGGAAGATCCAGAAAGATATCATCTCAGCAGGAAATCTTCAAATTCTCAAAAAAGGTGTATGTAATTTGATTCATAAACCAGAGAAACTGAACGCGATGTTTGGGAACCTGGAATTATTGAGAAACTGACTGATAAAAACGGTTATATATTTACAATTAGACATAAGTATGTTGGAAGCACGAAACTTGGTAGAAATATAATTTTACCATGATTGTCCAAAGATAAAATGTTTCTTGCACGCCGTTGTGATCTTCAAGAATAATTTTACAAGCGATTACTCAGCTCAATGTTGATTAAATGATTTGAAACTTGGTCAGTTTACTAATGAATTATTTAAATTTGGTGCACTCCAAATTTGAGTCCAGTATAAGCCTTTACTCAAATGTTATGATATTACAAACTTGAGTCCTGGTAATTATGCACCACCCTTTAAGTATTTCAAAATTCTTTAATCTGTGCATACTTGTAAAATTCCGGGCCCGGGCCGAGC</canonical>
            <polymorphic>CATCAAAACGATCCGTCCATTGAATATGGGCACTTTTCATGGTTCCGTTCTGTAAAAATGTACAGCTTTAAAGCTGGAGCTTTAGAATTCAAATAATGCATCAGTAAACTGGCCAAGTTTCAGATTATTTGATCAACTTTGAGCTGAATTTTCGTTTGTCAAAGTTGCTTCATCCCATGAAAATCAAAAGAAACATTAGGTCGTTCATCTTTCGACAATCATGAAAATACCTAGACTTGAGGAAACGCTTTGAAAATTTCAGTAGCTTTGAATCAGACTTAAAATCATATTTCTACCAATTTTCGTGCTTCCAAGGTATTTATGTCTAAAGATATACTCGTTTTTATCAGTCCGGGTGATTGTGCGCCACCCTGTAAAACTTGTTCAAACCATAAAGGAAATGATAAGAGCAGAAAACTCCTAACTTTCTGAAAACGCGTTCTTTTGTTCTCTCTCATCTTCTAAACCAAGCAGCAAATCCAAAAAGCATAGACTATGTSTTGCATATTAGGAAGATCCAGAAAGATATCATCTCAGCAGGAAATCTTCAAATTCTCAAAAAAGGTGTATGTAATTTGATTCATAAACCAGAGAAACTGAACGCGATGTTTGGGAACCTGGAATTATTGAGAAACTGACTGATAAAAACGGTTATATATTTACAATTAGACATAAGTATGTTGGAAGCACGAAACTTGGTAGAAATATAATTTTACCATGATTGTCCAAAGATAAAATGTTTCTTGCACGCCGTTGTGATCTTCAAGAATAATTTTACAAGCGATTACTCAGCTCAATGTTGATTAAATGATTTGAAACTTGGTCAGTTTACTAATGAATTATTTAAATTTGGTGCACTCCAAATTTGAGTCCAGTATAAGCCTTTACTCAAATGTTATGATATTACAAACTTGAGTCCTGGTAATTATGCACCACCCTTTAAGTATTTCAAAATTCTTTAATCTGTGCATACTTGTAAAATTCCGGGCCCGGGCCGAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNGTC</site>
                <isoschizomers>
                    <enzyme>AspI</enzyme>
                    <enzyme>PflFI</enzyme>
                    <enzyme>PsyI</enzyme>
                    <enzyme>TelI</enzyme>
                    <enzyme>Tth111I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTTCAAACCATAAAGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTCAGTTTCTCTGGTTTATGAAT</pcr_primer_p2>
		<pcr_amplicon_size>221</pcr_amplicon_size>
		<canonical_amplicon>TTGTTCAAACCATAAAGGAAATGATAAGAGCAGAAAACTCCTAACTTTCTGAAAACGCGTTCTTTTGTTCTCTCTCATCTTCTAAACCAAGCAGCAAATCCAAAAAGCATAGACTATGTCTTGCATATTAGGAAGATCCAGAAAGATATCATCTCAGCAGGAAATCTTCAAATTCTCAAAAAAGGTGTATGTAATTTGATTCATAAACCAGAGAAACTGAA</canonical_amplicon>
		<polymorphic_amplicon>TTGTTCAAACCATAAAGGAAATGATAAGAGCAGAAAACTCCTAACTTTCTGAAAACGCGTTCTTTTGTTCTCTCTCATCTTCTAAACCAAGCAGCAAATCCAAAAAGCATAGACTATGTSTTGCATATTAGGAAGATCCAGAAAGATATCATCTCAGCAGGAAATCTTCAAATTCTCAAAAAAGGTGTATGTAATTTGATTCATAAACCAGAGAAACTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13638</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>116870</contig_pos>
        <strand>+</strand>
        <context>TCAACTTTGT[A/G]CTGTTTTTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTCATCTAAAACCCGAGATATACCGTTTAGATTTTTATCAACTTTGT</left_flank>
        <right_flank>CTGTTTTTAAAAAGGAAATGAGCAGGAATAAGTCGAAGAAGCCTCCCCGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTATACTATTTATTGCATAGATGTCCGGAGTTCGGAATCCGTATTCCGGACTCCGGTATATTACTTTTATTCTGGACTCCGGATTCCGTGAACTTTTTCTTTTTTTTTTTCGTATTCCGGAAAATTATTGTCATTCCGGATTCCGGATTCCGTATACCGTAAAATTTTCATTTGTCCGTATTCCGGATTCCGAGAAAATTATTTTATTCCGGATTCCGTCACTCAAAAAAGTCAATCCGGACATCTATGATTTATAGGCATAAAAAGTTTCGGTTATTCTGGTCCTTATTAGAATTAAAAAAAGATGTTTGCCATCCTGCTCAACCGACGTATGGGAACCTTATATTAAAAGTTTTGTAGTCTATAGAAGGGACATAGAATTTCTAGATTTTTTTCTTTCAAGAAGCAGCAAAAACTCCCATTCCTTGGTCTAGAAACCACGATTGTTTTTCATCTAAAACCCGAGATATACCGTTTAGATTTTTATCAACTTTGTACTGTTTTTAAAAAGGAAATGAGCAGGAATAAGTCGAAGAAGCCTCCCCGCTTTGAATTACTGTAGTTTTGCCGAACTTACATGCCATATTATTGGAAAATGAGAATTCGTTTCTCTCATTTCTAAAGTTATCATCTTTGCCTCCTTTCTTTTCTGTCTTCCAGTACTCACAGTAGTCTTTTGTGAAATTCGCTCCACCGTCTGAAAATTTAAAATACTTAAAGTAAATTTTTTAAAAAAACAAGCTGACCGTTATTCTTCCTCCGTCTTTTATAGTAGTCATCACAGCTCGAGTACTTTCTCATACCGTTTCCCATTTCAATTCTTGGTTTGAGGTCTAGAGGAGATAACTGAAAGAATTCACACGTTTGCACTAGACAGTTGCTCTCGGAGAGAGTAAAACGAAATGATGATTTGTAAAGAGATAGATATGAAATATAAGAAGAAGAAGAAACTATTTGAAACATGCGATATTAGACCTATCAACTATAAACTATGAAC</canonical>
            <polymorphic>AAATTATACTATTTATTGCATAGATGTCCGGAGTTCGGAATCCGTATTCCGGACTCCGGTATATTACTTTTATTCTGGACTCCGGATTCCGTGAACTTTTTCTTTTTTTTTTTCGTATTCCGGAAAATTATTGTCATTCCGGATTCCGGATTCCGTATACCGTAAAATTTTCATTTGTCCGTATTCCGGATTCCGAGAAAATTATTTTATTCCGGATTCCGTCACTCAAAAAAGTCAATCCGGACATCTATGATTTATAGGCATAAAAAGTTTCGGTTATTCTGGTCCTTATTAGAATTAAAAAAAGATGTTTGCCATCCTGCTCAACCGACGTATGGGAACCTTATATTAAAAGTTTTGTAGTCTATAGAAGGGACATAGAATTTCTAGATTTTTTTCTTTCAAGAAGCAGCAAAAACTCCCATTCCTTGGTCTAGAAACCACGATTGTTTTTCATCTAAAACCCGAGATATACCGTTTAGATTTTTATCAACTTTGTRCTGTTTTTAAAAAGGAAATGAGCAGGAATAAGTCGAAGAAGCCTCCCCGCTTTGAATTACTGTAGTTTTGCCGAACTTACATGCCATATTATTGGAAAATGAGAATTCGTTTCTCTCATTTCTAAAGTTATCATCTTTGCCTCCTTTCTTTTCTGTCTTCCAGTACTCACAGTAGTCTTTTGTGAAATTCGCTCCACCGTCTGAAAATTTAAAATACTTAAAGTAAATTTTTTAAAAAAACAAGCTGACCGTTATTCTTCCTCCGTCTTTTATAGTAGTCATCACAGCTCGAGTACTTTCTCATACCGTTTCCCATTTCAATTCTTGGTTTGAGGTCTAGAGGAGATAACTGAAAGAATTCACACGTTTGCACTAGACAGTTGCTCTCGGAGAGAGTAAAACGAAATGATGATTTGTAAAGAGATAGATATGAAATATAAGAAGAAGAAGAAACTATTTGAAACATGCGATATTAGACCTATCAACTATAAACTATGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 206 165 130</canonical_bands>
                <polymorphic_bands>664 206 130</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>315 161 121 110 72 59 57 52 27 26</canonical_bands>
                <polymorphic_bands>315 161 121 110 85 72 57 52 27</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>497 208 165 130</canonical_bands>
                <polymorphic_bands>662 208 130</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACGTATGGGAACCTTATATTAAA</pcr_primer_p1>
		<pcr_primer_p2>TAAGTTCGGCAAAACTACAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACGTATGGGAACCTTATATTAAAAGTTTTGTAGTCTATAGAAGGGACATAGAATTTCTAGATTTTTTTCTTTCAAGAAGCAGCAAAAACTCCCATTCCTTGGTCTAGAAACCACGATTGTTTTTCATCTAAAACCCGAGATATACCGTTTAGATTTTTATCAACTTTGTACTGTTTTTAAAAAGGAAATGAGCAGGAATAAGTCGAAGAAGCCTCCCCGCTTTGAATTACTGTAGTTTTGCCGAACTTA</canonical_amplicon>
		<polymorphic_amplicon>GACGTATGGGAACCTTATATTAAAAGTTTTGTAGTCTATAGAAGGGACATAGAATTTCTAGATTTTTTTCTTTCAAGAAGCAGCAAAAACTCCCATTCCTTGGTCTAGAAACCACGATTGTTTTTCATCTAAAACCCGAGATATACCGTTTAGATTTTTATCAACTTTGTRCTGTTTTTAAAAAGGAAATGAGCAGGAATAAGTCGAAGAAGCCTCCCCGCTTTGAATTACTGTAGTTTTGCCGAACTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13639</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>116765</contig_pos>
        <strand>+</strand>
        <context>TTCTAGATTT[G/T]TTTCTTTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATATTAAAAGTTTTGTAGTCTATAGAAGGGACATAGAATTTCTAGATTT</left_flank>
        <right_flank>TTTCTTTCAAGAAGCAGCAAAAACTCCCATTCCTTGGTCTAGAAACCACG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCCCGGTGTGATTTCTAGGCCGTTTACCATTGTGGCCTAGAAAACTCAAACTTATAAAAGTTAGGCCACCATGTTAAAATGACCTGGAAAACACATTAGATGAAAATTATACTATTTATTGCATAGATGTCCGGAGTTCGGAATCCGTATTCCGGACTCCGGTATATTACTTTTATTCTGGACTCCGGATTCCGTGAACTTTTTCTTTTTTTTTTTCGTATTCCGGAAAATTATTGTCATTCCGGATTCCGGATTCCGTATACCGTAAAATTTTCATTTGTCCGTATTCCGGATTCCGAGAAAATTATTTTATTCCGGATTCCGTCACTCAAAAAAGTCAATCCGGACATCTATGATTTATAGGCATAAAAAGTTTCGGTTATTCTGGTCCTTATTAGAATTAAAAAAAGATGTTTGCCATCCTGCTCAACCGACGTATGGGAACCTTATATTAAAAGTTTTGTAGTCTATAGAAGGGACATAGAATTTCTAGATTTTTTTCTTTCAAGAAGCAGCAAAAACTCCCATTCCTTGGTCTAGAAACCACGATTGTTTTTCATCTAAAACCCGAGATATACCGTTTAGATTTTTATCAACTTTGTACTGTTTTTAAAAAGGAAATGAGCAGGAATAAGTCGAAGAAGCCTCCCCGCTTTGAATTACTGTAGTTTTGCCGAACTTACATGCCATATTATTGGAAAATGAGAATTCGTTTCTCTCATTTCTAAAGTTATCATCTTTGCCTCCTTTCTTTTCTGTCTTCCAGTACTCACAGTAGTCTTTTGTGAAATTCGCTCCACCGTCTGAAAATTTAAAATACTTAAAGTAAATTTTTTAAAAAAACAAGCTGACCGTTATTCTTCCTCCGTCTTTTATAGTAGTCATCACAGCTCGAGTACTTTCTCATACCGTTTCCCATTTCAATTCTTGGTTTGAGGTCTAGAGGAGATAACTGAAAGAATTCACACGTTTGCACTAGACAGTTGCTCTCGGAGAGA</canonical>
            <polymorphic>TATCCCGGTGTGATTTCTAGGCCGTTTACCATTGTGGCCTAGAAAACTCAAACTTATAAAAGTTAGGCCACCATGTTAAAATGACCTGGAAAACACATTAGATGAAAATTATACTATTTATTGCATAGATGTCCGGAGTTCGGAATCCGTATTCCGGACTCCGGTATATTACTTTTATTCTGGACTCCGGATTCCGTGAACTTTTTCTTTTTTTTTTTCGTATTCCGGAAAATTATTGTCATTCCGGATTCCGGATTCCGTATACCGTAAAATTTTCATTTGTCCGTATTCCGGATTCCGAGAAAATTATTTTATTCCGGATTCCGTCACTCAAAAAAGTCAATCCGGACATCTATGATTTATAGGCATAAAAAGTTTCGGTTATTCTGGTCCTTATTAGAATTAAAAAAAGATGTTTGCCATCCTGCTCAACCGACGTATGGGAACCTTATATTAAAAGTTTTGTAGTCTATAGAAGGGACATAGAATTTCTAGATTTKTTTCTTTCAAGAAGCAGCAAAAACTCCCATTCCTTGGTCTAGAAACCACGATTGTTTTTCATCTAAAACCCGAGATATACCGTTTAGATTTTTATCAACTTTGTACTGTTTTTAAAAAGGAAATGAGCAGGAATAAGTCGAAGAAGCCTCCCCGCTTTGAATTACTGTAGTTTTGCCGAACTTACATGCCATATTATTGGAAAATGAGAATTCGTTTCTCTCATTTCTAAAGTTATCATCTTTGCCTCCTTTCTTTTCTGTCTTCCAGTACTCACAGTAGTCTTTTGTGAAATTCGCTCCACCGTCTGAAAATTTAAAATACTTAAAGTAAATTTTTTAAAAAAACAAGCTGACCGTTATTCTTCCTCCGTCTTTTATAGTAGTCATCACAGCTCGAGTACTTTCTCATACCGTTTCCCATTTCAATTCTTGGTTTGAGGTCTAGAGGAGATAACTGAAAGAATTCACACGTTTGCACTAGACAGTTGCTCTCGGAGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACGTATGGGAACCTTATATTAAA</pcr_primer_p1>
		<pcr_primer_p2>TAAGTTCGGCAAAACTACAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACGTATGGGAACCTTATATTAAAAGTTTTGTAGTCTATAGAAGGGACATAGAATTTCTAGATTTTTTTCTTTCAAGAAGCAGCAAAAACTCCCATTCCTTGGTCTAGAAACCACGATTGTTTTTCATCTAAAACCCGAGATATACCGTTTAGATTTTTATCAACTTTGTACTGTTTTTAAAAAGGAAATGAGCAGGAATAAGTCGAAGAAGCCTCCCCGCTTTGAATTACTGTAGTTTTGCCGAACTTA</canonical_amplicon>
		<polymorphic_amplicon>GACGTATGGGAACCTTATATTAAAAGTTTTGTAGTCTATAGAAGGGACATAGAATTTCTAGATTTKTTTCTTTCAAGAAGCAGCAAAAACTCCCATTCCTTGGTCTAGAAACCACGATTGTTTTTCATCTAAAACCCGAGATATACCGTTTAGATTTTTATCAACTTTGTACTGTTTTTAAAAAGGAAATGAGCAGGAATAAGTCGAAGAAGCCTCCCCGCTTTGAATTACTGTAGTTTTGCCGAACTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13641</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>253315</contig_pos>
        <strand></strand>
        <context>AGAATGAACG[A/G]GTTTTTAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAACCAAATATCAGATTTCAAGAAGCCCACATGGAATTCGAGAATGAACG</left_flank>
        <right_flank>GTTTTTAAATATGTGCGAACTTCTACATATGACGTCGTCGTTTAAGATGA</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACGGAAATAGCACCGGATTTCAGGTTATCATTCTCTGGAAGTTTCTCATTTCCGGAGTTCGAATAGTTTGAAATTTTGGAAGGGAATTGGATTCCATCAGTTTTGTAACACAAGGAGAATTTAGAAGGCTTAGCTTACATCCTGCTGACTTTTTTTACGGTTTCTTTTTCATACCAATCTAACAAAGAACCTATTTCAAAAAACGGAGACGTTCTGTGTGTTTCTCCTATTTAAAAATATTCACTATGAGAATACTTTTCGTCTCCCAGACAAATGGAAAATACGTTCAACCATTATTTATTGTCCCAGTTGTGTGAGATTCAGTTTATTATTGAACAATAAAATTCCATGCGCATCAGGAACGCTCGTTTTTCGTTTTGTTCAATCTCCGTTCTCTTTAAAAATAATCTGGAACTCCTTGAATAATGTGTTTGTTTGTTAAATGTGAACCAAATATCAGATTTCAAGAAGCCCACATGGAATTCGAGAATGAACGAGTTTTTAAATATGTGCGAACTTCTACATATGACGTCGTCGTTTAAGATGAGGCAATGGAAAGAGATTAGAGTAGGGTTACTGTAGTTATGGGCGTTTCTGAATTACCAGACTCATCAAAATTATTATTAAAATCTGTGTCGATTTACGAGGGCCCGCCCTAAAATCCTAAACCGCATATAGAAAACAATTTTTATGAGTTTCGCGGTGTTTTCTAAACCAAACTTAGATATTTTGTTGAAAATATGATTCCTATACTATAGTTCTCTAGAATCTGTTTTTTATTGAAAAAACCAAACTTAATTGCGAAGATGGTCCAAACAAGGCAAAAGTTGAAATTGTATATTTTTGACTCGTATGTAGCAGAGATGTGCGTAAAATTTTTATTTTGCTAATTTGGTAAAACTTAAAATTTTACGGATTACAAGCTCTTAAAATCGTAAAATTCGTATACTAAACCATCTATCCAAATGGAAGAAAAACTGCAGTTTCATCTTTACTA</canonical>
            <polymorphic>AAAACGGAAATAGCACCGGATTTCAGGTTATCATTCTCTGGAAGTTTCTCATTTCCGGAGTTCGAATAGTTTGAAATTTTGGAAGGGAATTGGATTCCATCAGTTTTGTAACACAAGGAGAATTTAGAAGGCTTAGCTTACATCCTGCTGACTTTTTTTACGGTTTCTTTTTCATACCAATCTAACAAAGAACCTATTTCAAAAAACGGAGACGTTCTGTGTGTTTCTCCTATTTAAAAATATTCACTATGAGAATACTTTTCGTCTCCCAGACAAATGGAAAATACGTTCAACCATTATTTATTGTCCCAGTTGTGTGAGATTCAGTTTATTATTGAACAATAAAATTCCATGCGCATCAGGAACGCTCGTTTTTCGTTTTGTTCAATCTCCGTTCTCTTTAAAAATAATCTGGAACTCCTTGAATAATGTGTTTGTTTGTTAAATGTGAACCAAATATCAGATTTCAAGAAGCCCACATGGAATTCGAGAATGAACGRGTTTTTAAATATGTGCGAACTTCTACATATGACGTCGTCGTTTAAGATGAGGCAATGGAAAGAGATTAGAGTAGGGTTACTGTAGTTATGGGCGTTTCTGAATTACCAGACTCATCAAAATTATTATTAAAATCTGTGTCGATTTACGAGGGCCCGCCCTAAAATCCTAAACCGCATATAGAAAACAATTTTTATGAGTTTCGCGGTGTTTTCTAAACCAAACTTAGATATTTTGTTGAAAATATGATTCCTATACTATAGTTCTCTAGAATCTGTTTTTTATTGAAAAAACCAAACTTAATTGCGAAGATGGTCCAAACAAGGCAAAAGTTGAAATTGTATATTTTTGACTCGTATGTAGCAGAGATGTGCGTAAAATTTTTATTTTGCTAATTTGGTAAAACTTAAAATTTTACGGATTACAAGCTCTTAAAATCGTAAAATTCGTATACTAAACCATCTATCCAAATGGAAGAAAAACTGCAGTTTCATCTTTACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTTCGTTTTGTTCAATCTC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGATGAGTCTGGTAATTCA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTTTTTCGTTTTGTTCAATCTCCGTTCTCTTTAAAAATAATCTGGAACTCCTTGAATAATGTGTTTGTTTGTTAAATGTGAACCAAATATCAGATTTCAAGAAGCCCACATGGAATTCGAGAATGAACGAGTTTTTAAATATGTGCGAACTTCTACATATGACGTCGTCGTTTAAGATGAGGCAATGGAAAGAGATTAGAGTAGGGTTACTGTAGTTATGGGCGTTTCTGAATTACCAGACTCATCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTTCGTTTTGTTCAATCTCCGTTCTCTTTAAAAATAATCTGGAACTCCTTGAATAATGTGTTTGTTTGTTAAATGTGAACCAAATATCAGATTTCAAGAAGCCCACATGGAATTCGAGAATGAACGRGTTTTTAAATATGTGCGAACTTCTACATATGACGTCGTCGTTTAAGATGAGGCAATGGAAAGAGATTAGAGTAGGGTTACTGTAGTTATGGGCGTTTCTGAATTACCAGACTCATCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13642</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>256478</contig_pos>
        <strand>+</strand>
        <context>TTATATTACA[G/T]CGGAATGGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAGTAAATAAGTAGAAAGGAATAGAAGAAAAGAGCAAAAATTATATTACA</left_flank>
        <right_flank>CGGAATGGTGAAAAACACATGTTGAAAATATGAGAGATTTTATTGTTCTG</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAAGCTCAAATTTCATTTCACGTTCTCCTATACCGTTTTTTCCAAGAATTGACCTATTTTAGAAAATTTTGTAATTCAATATTATATGTTTTAATAATATGTTTGTACATTTCATGAAGCAAACACAACCATGAAATGTTGAATGCGTCAACCTGATTTCCGGTAATTAAACGACTTTCAGAGCAATTTTCAGAACTTTATTTTTTACTTTTTTCCACCCGATTCTGTTGAGTTTTTACACATTTCCAGTTCCTTTTTTTCAAAATTGAAGCCTGCAATTATTTGTTTCCTGAAGAAATAAGCAATCAAATTAATGAGTCCAGTCACGAGGGATCACGATGCTCCAGAATCTCCCACATCCTCTTATTTCTATTTTTGCTATTCTGAAAACGTTTTTTTAAGTCTTCGGTTCCTTACCCACACCTCCAGAAAAGCCTATTTTTTGTCTAGTAAATAAGTAGAAAGGAATAGAAGAAAAGAGCAAAAATTATATTACAGCGGAATGGTGAAAAACACATGTTGAAAATATGAGAGATTTTATTGTTCTGGTTTTAAAATTTTCATAATGAGGTTTAGGATGTTATTTGAAAACTATCTCGGAAGAAATTCCATCATAAATATCCGGAATGTTATTTCCGGAATTTTTCGAAATATCGAAAATCCAAGTTTCTAAATTTTGGAATTTCGTAATATTCTAGTTTTTATAACTTCGGAATTTTGGATGATTCCGATGTTCAAAATTTTGGAATTCCGGATTTCATAGTTCTGCAATTTTGAAGCATTTCGATTTGCATAATCCGGAATTTCGGAATATTCCAATTTTAAAAATTTCGGAGTTTTGGAATACTCCGATTTGCAAATTTTCGGAATTTCTGAATTTCGTAACTTCAGTATATTCCAAATTAAACATTTTCGGAATTTCGGAATTTCGGAACATTCCAATGTTTCAAAAAATTCGGAATTTCTGCATATTCCAATTTGCAAATTTAAGAATTTTG</canonical>
            <polymorphic>AATAAGCTCAAATTTCATTTCACGTTCTCCTATACCGTTTTTTCCAAGAATTGACCTATTTTAGAAAATTTTGTAATTCAATATTATATGTTTTAATAATATGTTTGTACATTTCATGAAGCAAACACAACCATGAAATGTTGAATGCGTCAACCTGATTTCCGGTAATTAAACGACTTTCAGAGCAATTTTCAGAACTTTATTTTTTACTTTTTTCCACCCGATTCTGTTGAGTTTTTACACATTTCCAGTTCCTTTTTTTCAAAATTGAAGCCTGCAATTATTTGTTTCCTGAAGAAATAAGCAATCAAATTAATGAGTCCAGTCACGAGGGATCACGATGCTCCAGAATCTCCCACATCCTCTTATTTCTATTTTTGCTATTCTGAAAACGTTTTTTTAAGTCTTCGGTTCCTTACCCACACCTCCAGAAAAGCCTATTTTTTGTCTAGTAAATAAGTAGAAAGGAATAGAAGAAAAGAGCAAAAATTATATTACAKCGGAATGGTGAAAAACACATGTTGAAAATATGAGAGATTTTATTGTTCTGGTTTTAAAATTTTCATAATGAGGTTTAGGATGTTATTTGAAAACTATCTCGGAAGAAATTCCATCATAAATATCCGGAATGTTATTTCCGGAATTTTTCGAAATATCGAAAATCCAAGTTTCTAAATTTTGGAATTTCGTAATATTCTAGTTTTTATAACTTCGGAATTTTGGATGATTCCGATGTTCAAAATTTTGGAATTCCGGATTTCATAGTTCTGCAATTTTGAAGCATTTCGATTTGCATAATCCGGAATTTCGGAATATTCCAATTTTAAAAATTTCGGAGTTTTGGAATACTCCGATTTGCAAATTTTCGGAATTTCTGAATTTCGTAACTTCAGTATATTCCAAATTAAACATTTTCGGAATTTCGGAATTTCGGAACATTCCAATGTTTCAAAAAATTCGGAATTTCTGCATATTCCAATTTGCAAATTTAAGAATTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCCACATCCTCTTATTTCTATT</pcr_primer_p1>
		<pcr_primer_p2>TCCGAGATAGTTTTCAAATAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCCACATCCTCTTATTTCTATTTTTGCTATTCTGAAAACGTTTTTTTAAGTCTTCGGTTCCTTACCCACACCTCCAGAAAAGCCTATTTTTTGTCTAGTAAATAAGTAGAAAGGAATAGAAGAAAAGAGCAAAAATTATATTACAGCGGAATGGTGAAAAACACATGTTGAAAATATGAGAGATTTTATTGTTCTGGTTTTAAAATTTTCATAATGAGGTTTAGGATGTTATTTGAAAACTATCTCGGA</canonical_amplicon>
		<polymorphic_amplicon>TCCCACATCCTCTTATTTCTATTTTTGCTATTCTGAAAACGTTTTTTTAAGTCTTCGGTTCCTTACCCACACCTCCAGAAAAGCCTATTTTTTGTCTAGTAAATAAGTAGAAAGGAATAGAAGAAAAGAGCAAAAATTATATTACAKCGGAATGGTGAAAAACACATGTTGAAAATATGAGAGATTTTATTGTTCTGGTTTTAAAATTTTCATAATGAGGTTTAGGATGTTATTTGAAAACTATCTCGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13643</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>266884</contig_pos>
        <strand>+</strand>
        <context>ACGAAAATTT[C/G]ACAGAGACCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAGAAAAACTAAAAATACAGGCGAAAATTCGAACTGCAAACGAAAATTT</left_flank>
        <right_flank>ACAGAGACCTGACAGGTGATTTCCGTCTCACTTGTCTCAAAGATATCTGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTGAGCATAGTAGCTAGAGAATTCTTTTTGTAAACTGTTTTCTATATATTTTTCCAAAACACACATTCAACTTTACTTTTTTGTTTCATGACATGATCTCTGGAAAATTCGCCAATCATAAATCATTTTTTATGTCAAAAGAAAAAAAATCAGCAAAATAAGAAAAAGGCTTTGTACAAAAAAAATACAATGCCTCTAATTTCAAATGGGTAATGATTCAGATTAGTTCCCATCCTATCTATCTCATTCTCGATCATTTTTTTCTCATTCTGTTTTTTCTCTGTTTTTATCTCTCTCGCTCTTTCTCATTCGCTTTTTTCCCACCCTAGTGTCAAAACATTCGGTTTTTCTTATGTTGAGTGCTCATCGTTACTCTAAATCGGAAAAAAAAGAGAGAAAAGAAGAAATAGGAAATAAGAGAAAGCAATTATTCTGACTGAATGTTCCAAAAGAAAAACTAAAAATACAGGCGAAAATTCGAACTGCAAACGAAAATTTCACAGAGACCTGACAGGTGATTTCCGTCTCACTTGTCTCAAAGATATCTGAAAACAAACAGCAATTGTCTTTTCACTTTTTCACTTATCTCAATTTTTAAGTGTTTTTCTAATATTTCAAATTCCAGGTCGAGAATATCTTCAATCGGTGTAAAACAGTCGAATGTGTTTATAAGTAAGTTCCTTCTTTTTTTCGTGTTTTGATGATGTTGTTTCCTCTATTTACATAATCCAGGTCAAAAATTCAGTGAAGATCACATATGTTATGTCAGTTCTATCTCTTCCTTTTTCTGTGTCTTTTTTGGTTGAAAATAAATAAAAGAGTCGAGTTACTCAAAAGAGACATAACATACTGACATTTTTGGTATGTCTAGGTAGACAACGTCAGAGTTGATTTTTTGGATTTTAGATTTTTCAGTTGAAGCTAAATTGGTGGGAACCAAGGATTGCATGACATATGTTTCAAAATCTTGTGATAACAATTTTATATAGAAATAATTAT</canonical>
            <polymorphic>AGTGAGCATAGTAGCTAGAGAATTCTTTTTGTAAACTGTTTTCTATATATTTTTCCAAAACACACATTCAACTTTACTTTTTTGTTTCATGACATGATCTCTGGAAAATTCGCCAATCATAAATCATTTTTTATGTCAAAAGAAAAAAAATCAGCAAAATAAGAAAAAGGCTTTGTACAAAAAAAATACAATGCCTCTAATTTCAAATGGGTAATGATTCAGATTAGTTCCCATCCTATCTATCTCATTCTCGATCATTTTTTTCTCATTCTGTTTTTTCTCTGTTTTTATCTCTCTCGCTCTTTCTCATTCGCTTTTTTCCCACCCTAGTGTCAAAACATTCGGTTTTTCTTATGTTGAGTGCTCATCGTTACTCTAAATCGGAAAAAAAAGAGAGAAAAGAAGAAATAGGAAATAAGAGAAAGCAATTATTCTGACTGAATGTTCCAAAAGAAAAACTAAAAATACAGGCGAAAATTCGAACTGCAAACGAAAATTTSACAGAGACCTGACAGGTGATTTCCGTCTCACTTGTCTCAAAGATATCTGAAAACAAACAGCAATTGTCTTTTCACTTTTTCACTTATCTCAATTTTTAAGTGTTTTTCTAATATTTCAAATTCCAGGTCGAGAATATCTTCAATCGGTGTAAAACAGTCGAATGTGTTTATAAGTAAGTTCCTTCTTTTTTTCGTGTTTTGATGATGTTGTTTCCTCTATTTACATAATCCAGGTCAAAAATTCAGTGAAGATCACATATGTTATGTCAGTTCTATCTCTTCCTTTTTCTGTGTCTTTTTTGGTTGAAAATAAATAAAAGAGTCGAGTTACTCAAAAGAGACATAACATACTGACATTTTTGGTATGTCTAGGTAGACAACGTCAGAGTTGATTTTTTGGATTTTAGATTTTTCAGTTGAAGCTAAATTGGTGGGAACCAAGGATTGCATGACATATGTTTCAAAATCTTGTGATAACAATTTTATATAGAAATAATTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>260 140 138 58 52 47 44 40 38 31 30 27 20 17 17 12 8 8 7 4 2</canonical_bands>
                <polymorphic_bands>260 155 140 58 52 47 44 40 38 31 30 27 20 17 12 8 8 7 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTTTCTTATGTTGAGTGCT</pcr_primer_p1>
		<pcr_primer_p2>TTGAGATAAGTGAAAAAGTGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTTTTTCTTATGTTGAGTGCTCATCGTTACTCTAAATCGGAAAAAAAAGAGAGAAAAGAAGAAATAGGAAATAAGAGAAAGCAATTATTCTGACTGAATGTTCCAAAAGAAAAACTAAAAATACAGGCGAAAATTCGAACTGCAAACGAAAATTTCACAGAGACCTGACAGGTGATTTCCGTCTCACTTGTCTCAAAGATATCTGAAAACAAACAGCAATTGTCTTTTCACTTTTTCACTTATCTCAA</canonical_amplicon>
		<polymorphic_amplicon>GGTTTTTCTTATGTTGAGTGCTCATCGTTACTCTAAATCGGAAAAAAAAGAGAGAAAAGAAGAAATAGGAAATAAGAGAAAGCAATTATTCTGACTGAATGTTCCAAAAGAAAAACTAAAAATACAGGCGAAAATTCGAACTGCAAACGAAAATTTSACAGAGACCTGACAGGTGATTTCCGTCTCACTTGTCTCAAAGATATCTGAAAACAAACAGCAATTGTCTTTTCACTTTTTCACTTATCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13644</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>267215</contig_pos>
        <strand>+</strand>
        <context>AGTCGAGTTA[C/T]TCAAAAGAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCTTTTTCTGTGTCTTTTTTGGTTGAAAATAAATAAAAGAGTCGAGTTA</left_flank>
        <right_flank>TCAAAAGAGACATAACATACTGACATTTTTGGTATGTCTAGGTAGACAAC</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCAAAACATTCGGTTTTTCTTATGTTGAGTGCTCATCGTTACTCTAAATCGGAAAAAAAAGAGAGAAAAGAAGAAATAGGAAATAAGAGAAAGCAATTATTCTGACTGAATGTTCCAAAAGAAAAACTAAAAATACAGGCGAAAATTCGAACTGCAAACGAAAATTTCACAGAGACCTGACAGGTGATTTCCGTCTCACTTGTCTCAAAGATATCTGAAAACAAACAGCAATTGTCTTTTCACTTTTTCACTTATCTCAATTTTTAAGTGTTTTTCTAATATTTCAAATTCCAGGTCGAGAATATCTTCAATCGGTGTAAAACAGTCGAATGTGTTTATAAGTAAGTTCCTTCTTTTTTTCGTGTTTTGATGATGTTGTTTCCTCTATTTACATAATCCAGGTCAAAAATTCAGTGAAGATCACATATGTTATGTCAGTTCTATCTCTTCCTTTTTCTGTGTCTTTTTTGGTTGAAAATAAATAAAAGAGTCGAGTTACTCAAAAGAGACATAACATACTGACATTTTTGGTATGTCTAGGTAGACAACGTCAGAGTTGATTTTTTGGATTTTAGATTTTTCAGTTGAAGCTAAATTGGTGGGAACCAAGGATTGCATGACATATGTTTCAAAATCTTGTGATAACAATTTTATATAGAAATAATTATCTCGCAGACATCATGATTGGTGATGGAAAATAGATGATTTCATGGCTAACAAATCATACGGATCACTTTTTTAAAAAAAGGTTCACAAGAAAGCTGTCACTCTGGTCTAATTTCAATCTGCCCTGCTTTCGGAAATTTTAAAGTGGGCGGGGCATAGGCCCAGTAGCAAAATCCGTAAAGGAATACTTGTAAAATTCCGGGCCGGGCCTGAGGAAATTTTCAAGGCCCGGGCCCGGCCCGGAAGGCCCGGTAGCAAAAATTTTGTCATTTTGAGCCAAATTTTGAGCTCTCAATACAATTTTTTCCATTATTTTTTTGTTTTTTTTGGATG</canonical>
            <polymorphic>GTCAAAACATTCGGTTTTTCTTATGTTGAGTGCTCATCGTTACTCTAAATCGGAAAAAAAAGAGAGAAAAGAAGAAATAGGAAATAAGAGAAAGCAATTATTCTGACTGAATGTTCCAAAAGAAAAACTAAAAATACAGGCGAAAATTCGAACTGCAAACGAAAATTTCACAGAGACCTGACAGGTGATTTCCGTCTCACTTGTCTCAAAGATATCTGAAAACAAACAGCAATTGTCTTTTCACTTTTTCACTTATCTCAATTTTTAAGTGTTTTTCTAATATTTCAAATTCCAGGTCGAGAATATCTTCAATCGGTGTAAAACAGTCGAATGTGTTTATAAGTAAGTTCCTTCTTTTTTTCGTGTTTTGATGATGTTGTTTCCTCTATTTACATAATCCAGGTCAAAAATTCAGTGAAGATCACATATGTTATGTCAGTTCTATCTCTTCCTTTTTCTGTGTCTTTTTTGGTTGAAAATAAATAAAAGAGTCGAGTTAYTCAAAAGAGACATAACATACTGACATTTTTGGTATGTCTAGGTAGACAACGTCAGAGTTGATTTTTTGGATTTTAGATTTTTCAGTTGAAGCTAAATTGGTGGGAACCAAGGATTGCATGACATATGTTTCAAAATCTTGTGATAACAATTTTATATAGAAATAATTATCTCGCAGACATCATGATTGGTGATGGAAAATAGATGATTTCATGGCTAACAAATCATACGGATCACTTTTTTAAAAAAAGGTTCACAAGAAAGCTGTCACTCTGGTCTAATTTCAATCTGCCCTGCTTTCGGAAATTTTAAAGTGGGCGGGGCATAGGCCCAGTAGCAAAATCCGTAAAGGAATACTTGTAAAATTCCGGGCCGGGCCTGAGGAAATTTTCAAGGCCCGGGCCCGGCCCGGAAGGCCCGGTAGCAAAAATTTTGTCATTTTGAGCCAAATTTTGAGCTCTCAATACAATTTTTTCCATTATTTTTTTGTTTTTTTTGGATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>457 269 236 38</canonical_bands>
                <polymorphic_bands>726 236 38</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTACATAATCCAGGTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAAACATATGTCATGCAATC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTTACATAATCCAGGTCAAAAATTCAGTGAAGATCACATATGTTATGTCAGTTCTATCTCTTCCTTTTTCTGTGTCTTTTTTGGTTGAAAATAAATAAAAGAGTCGAGTTACTCAAAAGAGACATAACATACTGACATTTTTGGTATGTCTAGGTAGACAACGTCAGAGTTGATTTTTTGGATTTTAGATTTTTCAGTTGAAGCTAAATTGGTGGGAACCAAGGATTGCATGACATATGTTTCAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTACATAATCCAGGTCAAAAATTCAGTGAAGATCACATATGTTATGTCAGTTCTATCTCTTCCTTTTTCTGTGTCTTTTTTGGTTGAAAATAAATAAAAGAGTCGAGTTAYTCAAAAGAGACATAACATACTGACATTTTTGGTATGTCTAGGTAGACAACGTCAGAGTTGATTTTTTGGATTTTAGATTTTTCAGTTGAAGCTAAATTGGTGGGAACCAAGGATTGCATGACATATGTTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13645</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>269153</contig_pos>
        <strand>+</strand>
        <context>TCTGAAATTC[A/C]AGAGAAGTAC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTTTGATTGTTTAATTGGACTTTTGTCTTCTAGCGGTTTCTGAAATTC</left_flank>
        <right_flank>AGAGAAGTACAAGGAAAAAGTCCAAAATATAGGTCTTCCTTGAAATTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCATATTCAGAGTAAGGGGAATCAGAAAATTAAGAGAGTTTGGAGAAAACGTCCTTTCTAGAAGTTTCCGGTACCCTCTAACCGATTCAAATTTCCGTTTTTTTTTCTTCTTTAAAATTCAAAACGACTTCTCACAACTCTCAAATTACTCTCCGGTTACTGTAGCAGTTTTTTGGAACGAGAGAAAAGAGTTCATGTTGCAATTCGCCGGAAAAAAATGCCAAAACAAAGCACTAGGAAGTGTTGTAAAACTAACCGAATATGACCCCTGGGACGAATGAAAGATGTTTTTCTATTTTTCGTTGTTCTTTTCTCGTTATGTTTCGACTGAAAATTGAACGTCAATTCTTCTTATCCCTTCGGTTTCTTTGGGAAACAGAATACCGAAAAATTAAAGTTTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTTCAAATTTATTAACATAAATTTTGATTGTTTAATTGGACTTTTGTCTTCTAGCGGTTTCTGAAATTCCAGAGAAGTACAAGGAAAAAGTCCAAAATATAGGTCTTCCTTGAAATTTTTAAAGACTTGCCCTCTATGATTTTTAGAATTTTTAGACCTGCACTTCTTTTTAAAAACCTTCTTCTCAATTTTCTCCTCTCACCAAAGTTCCGAATGAATCCATACTTTGATCTCAATTTCTTCCTGATTTTAAAAGTCTTTTATCGCTTCTCTTCGCAAAAAAAAATACGGAGGAAGACTACCGATAAGGTTCGTCTGGTTGAAAAAATCTGCATATTGAGTGGTCAAAAGCATTTGACGAAACGTTTGAAAAATGGCTTCTTCTACGTTTTTTCCACACTTTTCGCATGCACATGAATACGATAGTTTCTTGAAATCATGCATCAAATCAGACTTCATCTTCTGACATTCAATGACATGATCTTTTTCTTTTCGAAAAACACTTGAATCTTCTTTTCCTTTTTTGAATATTTTTTTTGAGATTACTGATGAGATTCCTAATTCTCGTTT</canonical>
            <polymorphic>CTCATATTCAGAGTAAGGGGAATCAGAAAATTAAGAGAGTTTGGAGAAAACGTCCTTTCTAGAAGTTTCCGGTACCCTCTAACCGATTCAAATTTCCGTTTTTTTTTCTTCTTTAAAATTCAAAACGACTTCTCACAACTCTCAAATTACTCTCCGGTTACTGTAGCAGTTTTTTGGAACGAGAGAAAAGAGTTCATGTTGCAATTCGCCGGAAAAAAATGCCAAAACAAAGCACTAGGAAGTGTTGTAAAACTAACCGAATATGACCCCTGGGACGAATGAAAGATGTTTTTCTATTTTTCGTTGTTCTTTTCTCGTTATGTTTCGACTGAAAATTGAACGTCAATTCTTCTTATCCCTTCGGTTTCTTTGGGAAACAGAATACCGAAAAATTAAAGTTTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTTCAAATTTATTAACATAAATTTTGATTGTTTAATTGGACTTTTGTCTTCTAGCGGTTTCTGAAATTCMAGAGAAGTACAAGGAAAAAGTCCAAAATATAGGTCTTCCTTGAAATTTTTAAAGACTTGCCCTCTATGATTTTTAGAATTTTTAGACCTGCACTTCTTTTTAAAAACCTTCTTCTCAATTTTCTCCTCTCACCAAAGTTCCGAATGAATCCATACTTTGATCTCAATTTCTTCCTGATTTTAAAAGTCTTTTATCGCTTCTCTTCGCAAAAAAAAATACGGAGGAAGACTACCGATAAGGTTCGTCTGGTTGAAAAAATCTGCATATTGAGTGGTCAAAAGCATTTGACGAAACGTTTGAAAAATGGCTTCTTCTACGTTTTTTCCACACTTTTCGCATGCACATGAATACGATAGTTTCTTGAAATCATGCATCAAATCAGACTTCATCTTCTGACATTCAATGACATGATCTTTTTCTTTTCGAAAAACACTTGAATCTTCTTTTCCTTTTTTGAATATTTTTTTTGAGATTACTGATGAGATTCCTAATTCTCGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGTTTTCCCTTTCTCTAATTT</pcr_primer_p1>
		<pcr_primer_p2>AGTATGGATTCATTCGGAACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CATGTTTTCCCTTTCTCTAATTTTTCAAATTTATTAACATAAATTTTGATTGTTTAATTGGACTTTTGTCTTCTAGCGGTTTCTGAAATTCCAGAGAAGTACAAGGAAAAAGTCCAAAATATAGGTCTTCCTTGAAATTTTTAAAGACTTGCCCTCTATGATTTTTAGAATTTTTAGACCTGCACTTCTTTTTAAAAACCTTCTTCTCAATTTTCTCCTCTCACCAAAGTTCCGAATGAATCCATACT</canonical_amplicon>
		<polymorphic_amplicon>CATGTTTTCCCTTTCTCTAATTTTTCAAATTTATTAACATAAATTTTGATTGTTTAATTGGACTTTTGTCTTCTAGCGGTTTCTGAAATTCMAGAGAAGTACAAGGAAAAAGTCCAAAATATAGGTCTTCCTTGAAATTTTTAAAGACTTGCCCTCTATGATTTTTAGAATTTTTAGACCTGCACTTCTTTTTAAAAACCTTCTTCTCAATTTTCTCCTCTCACCAAAGTTCCGAATGAATCCATACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13646</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>269113</contig_pos>
        <strand>+</strand>
        <context>AATTTTGATT[G/T]TTTAATTGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGTTTTCCCTTTCTCTAATTTTTCAAATTTATTAACATAAATTTTGATT</left_flank>
        <right_flank>TTTAATTGGACTTTTGTCTTCTAGCGGTTTCTGAAATTCCAGAGAAGTAC</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTTTTTCTCTCTCTCTCTCAAGTTTTTCGCACTTGTTACTCATATTCAGAGTAAGGGGAATCAGAAAATTAAGAGAGTTTGGAGAAAACGTCCTTTCTAGAAGTTTCCGGTACCCTCTAACCGATTCAAATTTCCGTTTTTTTTTCTTCTTTAAAATTCAAAACGACTTCTCACAACTCTCAAATTACTCTCCGGTTACTGTAGCAGTTTTTTGGAACGAGAGAAAAGAGTTCATGTTGCAATTCGCCGGAAAAAAATGCCAAAACAAAGCACTAGGAAGTGTTGTAAAACTAACCGAATATGACCCCTGGGACGAATGAAAGATGTTTTTCTATTTTTCGTTGTTCTTTTCTCGTTATGTTTCGACTGAAAATTGAACGTCAATTCTTCTTATCCCTTCGGTTTCTTTGGGAAACAGAATACCGAAAAATTAAAGTTTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTTCAAATTTATTAACATAAATTTTGATTGTTTAATTGGACTTTTGTCTTCTAGCGGTTTCTGAAATTCCAGAGAAGTACAAGGAAAAAGTCCAAAATATAGGTCTTCCTTGAAATTTTTAAAGACTTGCCCTCTATGATTTTTAGAATTTTTAGACCTGCACTTCTTTTTAAAAACCTTCTTCTCAATTTTCTCCTCTCACCAAAGTTCCGAATGAATCCATACTTTGATCTCAATTTCTTCCTGATTTTAAAAGTCTTTTATCGCTTCTCTTCGCAAAAAAAAATACGGAGGAAGACTACCGATAAGGTTCGTCTGGTTGAAAAAATCTGCATATTGAGTGGTCAAAAGCATTTGACGAAACGTTTGAAAAATGGCTTCTTCTACGTTTTTTCCACACTTTTCGCATGCACATGAATACGATAGTTTCTTGAAATCATGCATCAAATCAGACTTCATCTTCTGACATTCAATGACATGATCTTTTTCTTTTCGAAAAACACTTGAATCTTCTTTTCCTTTTTTGAATA</canonical>
            <polymorphic>CCTTTTTTCTCTCTCTCTCTCAAGTTTTTCGCACTTGTTACTCATATTCAGAGTAAGGGGAATCAGAAAATTAAGAGAGTTTGGAGAAAACGTCCTTTCTAGAAGTTTCCGGTACCCTCTAACCGATTCAAATTTCCGTTTTTTTTTCTTCTTTAAAATTCAAAACGACTTCTCACAACTCTCAAATTACTCTCCGGTTACTGTAGCAGTTTTTTGGAACGAGAGAAAAGAGTTCATGTTGCAATTCGCCGGAAAAAAATGCCAAAACAAAGCACTAGGAAGTGTTGTAAAACTAACCGAATATGACCCCTGGGACGAATGAAAGATGTTTTTCTATTTTTCGTTGTTCTTTTCTCGTTATGTTTCGACTGAAAATTGAACGTCAATTCTTCTTATCCCTTCGGTTTCTTTGGGAAACAGAATACCGAAAAATTAAAGTTTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTTCAAATTTATTAACATAAATTTTGATTKTTTAATTGGACTTTTGTCTTCTAGCGGTTTCTGAAATTCCAGAGAAGTACAAGGAAAAAGTCCAAAATATAGGTCTTCCTTGAAATTTTTAAAGACTTGCCCTCTATGATTTTTAGAATTTTTAGACCTGCACTTCTTTTTAAAAACCTTCTTCTCAATTTTCTCCTCTCACCAAAGTTCCGAATGAATCCATACTTTGATCTCAATTTCTTCCTGATTTTAAAAGTCTTTTATCGCTTCTCTTCGCAAAAAAAAATACGGAGGAAGACTACCGATAAGGTTCGTCTGGTTGAAAAAATCTGCATATTGAGTGGTCAAAAGCATTTGACGAAACGTTTGAAAAATGGCTTCTTCTACGTTTTTTCCACACTTTTCGCATGCACATGAATACGATAGTTTCTTGAAATCATGCATCAAATCAGACTTCATCTTCTGACATTCAATGACATGATCTTTTTCTTTTCGAAAAACACTTGAATCTTCTTTTCCTTTTTTGAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAAAGATGTTTTTCTATTTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGGACTTTTTCCTTGTACT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATGAAAGATGTTTTTCTATTTTTCGTTGTTCTTTTCTCGTTATGTTTCGACTGAAAATTGAACGTCAATTCTTCTTATCCCTTCGGTTTCTTTGGGAAACAGAATACCGAAAAATTAAAGTTTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTTCAAATTTATTAACATAAATTTTGATTGTTTAATTGGACTTTTGTCTTCTAGCGGTTTCTGAAATTCCAGAGAAGTACAAGGAAAAAGTCCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AATGAAAGATGTTTTTCTATTTTTCGTTGTTCTTTTCTCGTTATGTTTCGACTGAAAATTGAACGTCAATTCTTCTTATCCCTTCGGTTTCTTTGGGAAACAGAATACCGAAAAATTAAAGTTTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTTCAAATTTATTAACATAAATTTTGATTKTTTAATTGGACTTTTGTCTTCTAGCGGTTTCTGAAATTCCAGAGAAGTACAAGGAAAAAGTCCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13647</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>269094</contig_pos>
        <strand></strand>
        <context>TTTCAAATTT[A/C]TTAACATAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTAAAGTTTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTTCAAATTT</left_flank>
        <right_flank>TTAACATAAATTTTGATTGTTTAATTGGACTTTTGTCTTCTAGCGGTTTC</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTTACATTTTTCATCTCCCTTTTTTCTCTCTCTCTCTCAAGTTTTTCGCACTTGTTACTCATATTCAGAGTAAGGGGAATCAGAAAATTAAGAGAGTTTGGAGAAAACGTCCTTTCTAGAAGTTTCCGGTACCCTCTAACCGATTCAAATTTCCGTTTTTTTTTCTTCTTTAAAATTCAAAACGACTTCTCACAACTCTCAAATTACTCTCCGGTTACTGTAGCAGTTTTTTGGAACGAGAGAAAAGAGTTCATGTTGCAATTCGCCGGAAAAAAATGCCAAAACAAAGCACTAGGAAGTGTTGTAAAACTAACCGAATATGACCCCTGGGACGAATGAAAGATGTTTTTCTATTTTTCGTTGTTCTTTTCTCGTTATGTTTCGACTGAAAATTGAACGTCAATTCTTCTTATCCCTTCGGTTTCTTTGGGAAACAGAATACCGAAAAATTAAAGTTTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTTCAAATTTATTAACATAAATTTTGATTGTTTAATTGGACTTTTGTCTTCTAGCGGTTTCTGAAATTCCAGAGAAGTACAAGGAAAAAGTCCAAAATATAGGTCTTCCTTGAAATTTTTAAAGACTTGCCCTCTATGATTTTTAGAATTTTTAGACCTGCACTTCTTTTTAAAAACCTTCTTCTCAATTTTCTCCTCTCACCAAAGTTCCGAATGAATCCATACTTTGATCTCAATTTCTTCCTGATTTTAAAAGTCTTTTATCGCTTCTCTTCGCAAAAAAAAATACGGAGGAAGACTACCGATAAGGTTCGTCTGGTTGAAAAAATCTGCATATTGAGTGGTCAAAAGCATTTGACGAAACGTTTGAAAAATGGCTTCTTCTACGTTTTTTCCACACTTTTCGCATGCACATGAATACGATAGTTTCTTGAAATCATGCATCAAATCAGACTTCATCTTCTGACATTCAATGACATGATCTTTTTCTTTTCGAAAAACACTTGAATCT</canonical>
            <polymorphic>GTGTTACATTTTTCATCTCCCTTTTTTCTCTCTCTCTCTCAAGTTTTTCGCACTTGTTACTCATATTCAGAGTAAGGGGAATCAGAAAATTAAGAGAGTTTGGAGAAAACGTCCTTTCTAGAAGTTTCCGGTACCCTCTAACCGATTCAAATTTCCGTTTTTTTTTCTTCTTTAAAATTCAAAACGACTTCTCACAACTCTCAAATTACTCTCCGGTTACTGTAGCAGTTTTTTGGAACGAGAGAAAAGAGTTCATGTTGCAATTCGCCGGAAAAAAATGCCAAAACAAAGCACTAGGAAGTGTTGTAAAACTAACCGAATATGACCCCTGGGACGAATGAAAGATGTTTTTCTATTTTTCGTTGTTCTTTTCTCGTTATGTTTCGACTGAAAATTGAACGTCAATTCTTCTTATCCCTTCGGTTTCTTTGGGAAACAGAATACCGAAAAATTAAAGTTTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTTCAAATTTMTTAACATAAATTTTGATTGTTTAATTGGACTTTTGTCTTCTAGCGGTTTCTGAAATTCCAGAGAAGTACAAGGAAAAAGTCCAAAATATAGGTCTTCCTTGAAATTTTTAAAGACTTGCCCTCTATGATTTTTAGAATTTTTAGACCTGCACTTCTTTTTAAAAACCTTCTTCTCAATTTTCTCCTCTCACCAAAGTTCCGAATGAATCCATACTTTGATCTCAATTTCTTCCTGATTTTAAAAGTCTTTTATCGCTTCTCTTCGCAAAAAAAAATACGGAGGAAGACTACCGATAAGGTTCGTCTGGTTGAAAAAATCTGCATATTGAGTGGTCAAAAGCATTTGACGAAACGTTTGAAAAATGGCTTCTTCTACGTTTTTTCCACACTTTTCGCATGCACATGAATACGATAGTTTCTTGAAATCATGCATCAAATCAGACTTCATCTTCTGACATTCAATGACATGATCTTTTTCTTTTCGAAAAACACTTGAATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAAAGATGTTTTTCTATTTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGGACTTTTTCCTTGTACT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATGAAAGATGTTTTTCTATTTTTCGTTGTTCTTTTCTCGTTATGTTTCGACTGAAAATTGAACGTCAATTCTTCTTATCCCTTCGGTTTCTTTGGGAAACAGAATACCGAAAAATTAAAGTTTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTTCAAATTTATTAACATAAATTTTGATTGTTTAATTGGACTTTTGTCTTCTAGCGGTTTCTGAAATTCCAGAGAAGTACAAGGAAAAAGTCCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AATGAAAGATGTTTTTCTATTTTTCGTTGTTCTTTTCTCGTTATGTTTCGACTGAAAATTGAACGTCAATTCTTCTTATCCCTTCGGTTTCTTTGGGAAACAGAATACCGAAAAATTAAAGTTTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTTCAAATTTMTTAACATAAATTTTGATTGTTTAATTGGACTTTTGTCTTCTAGCGGTTTCTGAAATTCCAGAGAAGTACAAGGAAAAAGTCCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13648</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>269036</contig_pos>
        <strand>+</strand>
        <context>GGAAACAGAA[C/T]ACCGAAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTGAACGTCAATTCTTCTTATCCCTTCGGTTTCTTTGGGAAACAGAA</left_flank>
        <right_flank>ACCGAAAAATTAAAGTTTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAATTGAATACTTTGTCGTCCAAATGAGTCAGTTTTTTTTCAATGTTTTTTTTTCTGTGTTACATTTTTCATCTCCCTTTTTTCTCTCTCTCTCTCAAGTTTTTCGCACTTGTTACTCATATTCAGAGTAAGGGGAATCAGAAAATTAAGAGAGTTTGGAGAAAACGTCCTTTCTAGAAGTTTCCGGTACCCTCTAACCGATTCAAATTTCCGTTTTTTTTTCTTCTTTAAAATTCAAAACGACTTCTCACAACTCTCAAATTACTCTCCGGTTACTGTAGCAGTTTTTTGGAACGAGAGAAAAGAGTTCATGTTGCAATTCGCCGGAAAAAAATGCCAAAACAAAGCACTAGGAAGTGTTGTAAAACTAACCGAATATGACCCCTGGGACGAATGAAAGATGTTTTTCTATTTTTCGTTGTTCTTTTCTCGTTATGTTTCGACTGAAAATTGAACGTCAATTCTTCTTATCCCTTCGGTTTCTTTGGGAAACAGAATACCGAAAAATTAAAGTTTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTTCAAATTTATTAACATAAATTTTGATTGTTTAATTGGACTTTTGTCTTCTAGCGGTTTCTGAAATTCCAGAGAAGTACAAGGAAAAAGTCCAAAATATAGGTCTTCCTTGAAATTTTTAAAGACTTGCCCTCTATGATTTTTAGAATTTTTAGACCTGCACTTCTTTTTAAAAACCTTCTTCTCAATTTTCTCCTCTCACCAAAGTTCCGAATGAATCCATACTTTGATCTCAATTTCTTCCTGATTTTAAAAGTCTTTTATCGCTTCTCTTCGCAAAAAAAAATACGGAGGAAGACTACCGATAAGGTTCGTCTGGTTGAAAAAATCTGCATATTGAGTGGTCAAAAGCATTTGACGAAACGTTTGAAAAATGGCTTCTTCTACGTTTTTTCCACACTTTTCGCATGCACATGAATACGATAGTTTCTTGAAATCATGCATCAAATCAGA</canonical>
            <polymorphic>TTTAATTGAATACTTTGTCGTCCAAATGAGTCAGTTTTTTTTCAATGTTTTTTTTTCTGTGTTACATTTTTCATCTCCCTTTTTTCTCTCTCTCTCTCAAGTTTTTCGCACTTGTTACTCATATTCAGAGTAAGGGGAATCAGAAAATTAAGAGAGTTTGGAGAAAACGTCCTTTCTAGAAGTTTCCGGTACCCTCTAACCGATTCAAATTTCCGTTTTTTTTTCTTCTTTAAAATTCAAAACGACTTCTCACAACTCTCAAATTACTCTCCGGTTACTGTAGCAGTTTTTTGGAACGAGAGAAAAGAGTTCATGTTGCAATTCGCCGGAAAAAAATGCCAAAACAAAGCACTAGGAAGTGTTGTAAAACTAACCGAATATGACCCCTGGGACGAATGAAAGATGTTTTTCTATTTTTCGTTGTTCTTTTCTCGTTATGTTTCGACTGAAAATTGAACGTCAATTCTTCTTATCCCTTCGGTTTCTTTGGGAAACAGAAYACCGAAAAATTAAAGTTTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTTCAAATTTATTAACATAAATTTTGATTGTTTAATTGGACTTTTGTCTTCTAGCGGTTTCTGAAATTCCAGAGAAGTACAAGGAAAAAGTCCAAAATATAGGTCTTCCTTGAAATTTTTAAAGACTTGCCCTCTATGATTTTTAGAATTTTTAGACCTGCACTTCTTTTTAAAAACCTTCTTCTCAATTTTCTCCTCTCACCAAAGTTCCGAATGAATCCATACTTTGATCTCAATTTCTTCCTGATTTTAAAAGTCTTTTATCGCTTCTCTTCGCAAAAAAAAATACGGAGGAAGACTACCGATAAGGTTCGTCTGGTTGAAAAAATCTGCATATTGAGTGGTCAAAAGCATTTGACGAAACGTTTGAAAAATGGCTTCTTCTACGTTTTTTCCACACTTTTCGCATGCACATGAATACGATAGTTTCTTGAAATCATGCATCAAATCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAAAACTAACCGAATATGACC</pcr_primer_p1>
		<pcr_primer_p2>GCTAGAAGACAAAAGTCCAATTA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TGTAAAACTAACCGAATATGACCCCTGGGACGAATGAAAGATGTTTTTCTATTTTTCGTTGTTCTTTTCTCGTTATGTTTCGACTGAAAATTGAACGTCAATTCTTCTTATCCCTTCGGTTTCTTTGGGAAACAGAATACCGAAAAATTAAAGTTTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTTCAAATTTATTAACATAAATTTTGATTGTTTAATTGGACTTTTGTCTTCTAGC</canonical_amplicon>
		<polymorphic_amplicon>TGTAAAACTAACCGAATATGACCCCTGGGACGAATGAAAGATGTTTTTCTATTTTTCGTTGTTCTTTTCTCGTTATGTTTCGACTGAAAATTGAACGTCAATTCTTCTTATCCCTTCGGTTTCTTTGGGAAACAGAAYACCGAAAAATTAAAGTTTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTTCAAATTTATTAACATAAATTTTGATTGTTTAATTGGACTTTTGTCTTCTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13649</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>269004</contig_pos>
        <strand>+</strand>
        <context>CGTCAATTCT[G/T]CTTATCCCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGTTGTTCTTTTCTCGTTATGTTTCGACTGAAAATTGAACGTCAATTCT</left_flank>
        <right_flank>CTTATCCCTTCGGTTTCTTTGGGAAACAGAATACCGAAAAATTAAAGTTT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAAATGAAAGAGGAGGACCACCAGAAATTTTAATTGAATACTTTGTCGTCCAAATGAGTCAGTTTTTTTTCAATGTTTTTTTTTCTGTGTTACATTTTTCATCTCCCTTTTTTCTCTCTCTCTCTCAAGTTTTTCGCACTTGTTACTCATATTCAGAGTAAGGGGAATCAGAAAATTAAGAGAGTTTGGAGAAAACGTCCTTTCTAGAAGTTTCCGGTACCCTCTAACCGATTCAAATTTCCGTTTTTTTTTCTTCTTTAAAATTCAAAACGACTTCTCACAACTCTCAAATTACTCTCCGGTTACTGTAGCAGTTTTTTGGAACGAGAGAAAAGAGTTCATGTTGCAATTCGCCGGAAAAAAATGCCAAAACAAAGCACTAGGAAGTGTTGTAAAACTAACCGAATATGACCCCTGGGACGAATGAAAGATGTTTTTCTATTTTTCGTTGTTCTTTTCTCGTTATGTTTCGACTGAAAATTGAACGTCAATTCTTCTTATCCCTTCGGTTTCTTTGGGAAACAGAATACCGAAAAATTAAAGTTTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTTCAAATTTATTAACATAAATTTTGATTGTTTAATTGGACTTTTGTCTTCTAGCGGTTTCTGAAATTCCAGAGAAGTACAAGGAAAAAGTCCAAAATATAGGTCTTCCTTGAAATTTTTAAAGACTTGCCCTCTATGATTTTTAGAATTTTTAGACCTGCACTTCTTTTTAAAAACCTTCTTCTCAATTTTCTCCTCTCACCAAAGTTCCGAATGAATCCATACTTTGATCTCAATTTCTTCCTGATTTTAAAAGTCTTTTATCGCTTCTCTTCGCAAAAAAAAATACGGAGGAAGACTACCGATAAGGTTCGTCTGGTTGAAAAAATCTGCATATTGAGTGGTCAAAAGCATTTGACGAAACGTTTGAAAAATGGCTTCTTCTACGTTTTTTCCACACTTTTCGCATGCACATGAATAC</canonical>
            <polymorphic>AAAAAAAATGAAAGAGGAGGACCACCAGAAATTTTAATTGAATACTTTGTCGTCCAAATGAGTCAGTTTTTTTTCAATGTTTTTTTTTCTGTGTTACATTTTTCATCTCCCTTTTTTCTCTCTCTCTCTCAAGTTTTTCGCACTTGTTACTCATATTCAGAGTAAGGGGAATCAGAAAATTAAGAGAGTTTGGAGAAAACGTCCTTTCTAGAAGTTTCCGGTACCCTCTAACCGATTCAAATTTCCGTTTTTTTTTCTTCTTTAAAATTCAAAACGACTTCTCACAACTCTCAAATTACTCTCCGGTTACTGTAGCAGTTTTTTGGAACGAGAGAAAAGAGTTCATGTTGCAATTCGCCGGAAAAAAATGCCAAAACAAAGCACTAGGAAGTGTTGTAAAACTAACCGAATATGACCCCTGGGACGAATGAAAGATGTTTTTCTATTTTTCGTTGTTCTTTTCTCGTTATGTTTCGACTGAAAATTGAACGTCAATTCTKCTTATCCCTTCGGTTTCTTTGGGAAACAGAATACCGAAAAATTAAAGTTTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTTCAAATTTATTAACATAAATTTTGATTGTTTAATTGGACTTTTGTCTTCTAGCGGTTTCTGAAATTCCAGAGAAGTACAAGGAAAAAGTCCAAAATATAGGTCTTCCTTGAAATTTTTAAAGACTTGCCCTCTATGATTTTTAGAATTTTTAGACCTGCACTTCTTTTTAAAAACCTTCTTCTCAATTTTCTCCTCTCACCAAAGTTCCGAATGAATCCATACTTTGATCTCAATTTCTTCCTGATTTTAAAAGTCTTTTATCGCTTCTCTTCGCAAAAAAAAATACGGAGGAAGACTACCGATAAGGTTCGTCTGGTTGAAAAAATCTGCATATTGAGTGGTCAAAAGCATTTGACGAAACGTTTGAAAAATGGCTTCTTCTACGTTTTTTCCACACTTTTCGCATGCACATGAATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAAAACTAACCGAATATGACC</pcr_primer_p1>
		<pcr_primer_p2>GCTAGAAGACAAAAGTCCAATTA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TGTAAAACTAACCGAATATGACCCCTGGGACGAATGAAAGATGTTTTTCTATTTTTCGTTGTTCTTTTCTCGTTATGTTTCGACTGAAAATTGAACGTCAATTCTTCTTATCCCTTCGGTTTCTTTGGGAAACAGAATACCGAAAAATTAAAGTTTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTTCAAATTTATTAACATAAATTTTGATTGTTTAATTGGACTTTTGTCTTCTAGC</canonical_amplicon>
		<polymorphic_amplicon>TGTAAAACTAACCGAATATGACCCCTGGGACGAATGAAAGATGTTTTTCTATTTTTCGTTGTTCTTTTCTCGTTATGTTTCGACTGAAAATTGAACGTCAATTCTKCTTATCCCTTCGGTTTCTTTGGGAAACAGAATACCGAAAAATTAAAGTTTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTTCAAATTTATTAACATAAATTTTGATTGTTTAATTGGACTTTTGTCTTCTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13650</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>268958</contig_pos>
        <strand>+</strand>
        <context>TATTTTTCGT[A/T]GTTCTTTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACCGAATATGACCCCTGGGACGAATGAAAGATGTTTTTCTATTTTTCGT</left_flank>
        <right_flank>GTTCTTTTCTCGTTATGTTTCGACTGAAAATTGAACGTCAATTCTTCTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCAACCCAACTAACTTTTCGAGTTGTTGTGTCTACTTTTTTTGGAAAAAAAATGAAAGAGGAGGACCACCAGAAATTTTAATTGAATACTTTGTCGTCCAAATGAGTCAGTTTTTTTTCAATGTTTTTTTTTCTGTGTTACATTTTTCATCTCCCTTTTTTCTCTCTCTCTCTCAAGTTTTTCGCACTTGTTACTCATATTCAGAGTAAGGGGAATCAGAAAATTAAGAGAGTTTGGAGAAAACGTCCTTTCTAGAAGTTTCCGGTACCCTCTAACCGATTCAAATTTCCGTTTTTTTTTCTTCTTTAAAATTCAAAACGACTTCTCACAACTCTCAAATTACTCTCCGGTTACTGTAGCAGTTTTTTGGAACGAGAGAAAAGAGTTCATGTTGCAATTCGCCGGAAAAAAATGCCAAAACAAAGCACTAGGAAGTGTTGTAAAACTAACCGAATATGACCCCTGGGACGAATGAAAGATGTTTTTCTATTTTTCGTTGTTCTTTTCTCGTTATGTTTCGACTGAAAATTGAACGTCAATTCTTCTTATCCCTTCGGTTTCTTTGGGAAACAGAATACCGAAAAATTAAAGTTTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTTCAAATTTATTAACATAAATTTTGATTGTTTAATTGGACTTTTGTCTTCTAGCGGTTTCTGAAATTCCAGAGAAGTACAAGGAAAAAGTCCAAAATATAGGTCTTCCTTGAAATTTTTAAAGACTTGCCCTCTATGATTTTTAGAATTTTTAGACCTGCACTTCTTTTTAAAAACCTTCTTCTCAATTTTCTCCTCTCACCAAAGTTCCGAATGAATCCATACTTTGATCTCAATTTCTTCCTGATTTTAAAAGTCTTTTATCGCTTCTCTTCGCAAAAAAAAATACGGAGGAAGACTACCGATAAGGTTCGTCTGGTTGAAAAAATCTGCATATTGAGTGGTCAAAAGCATTTGACGAAACGTTTGAAAAAT</canonical>
            <polymorphic>TCTCAACCCAACTAACTTTTCGAGTTGTTGTGTCTACTTTTTTTGGAAAAAAAATGAAAGAGGAGGACCACCAGAAATTTTAATTGAATACTTTGTCGTCCAAATGAGTCAGTTTTTTTTCAATGTTTTTTTTTCTGTGTTACATTTTTCATCTCCCTTTTTTCTCTCTCTCTCTCAAGTTTTTCGCACTTGTTACTCATATTCAGAGTAAGGGGAATCAGAAAATTAAGAGAGTTTGGAGAAAACGTCCTTTCTAGAAGTTTCCGGTACCCTCTAACCGATTCAAATTTCCGTTTTTTTTTCTTCTTTAAAATTCAAAACGACTTCTCACAACTCTCAAATTACTCTCCGGTTACTGTAGCAGTTTTTTGGAACGAGAGAAAAGAGTTCATGTTGCAATTCGCCGGAAAAAAATGCCAAAACAAAGCACTAGGAAGTGTTGTAAAACTAACCGAATATGACCCCTGGGACGAATGAAAGATGTTTTTCTATTTTTCGTWGTTCTTTTCTCGTTATGTTTCGACTGAAAATTGAACGTCAATTCTTCTTATCCCTTCGGTTTCTTTGGGAAACAGAATACCGAAAAATTAAAGTTTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTTCAAATTTATTAACATAAATTTTGATTGTTTAATTGGACTTTTGTCTTCTAGCGGTTTCTGAAATTCCAGAGAAGTACAAGGAAAAAGTCCAAAATATAGGTCTTCCTTGAAATTTTTAAAGACTTGCCCTCTATGATTTTTAGAATTTTTAGACCTGCACTTCTTTTTAAAAACCTTCTTCTCAATTTTCTCCTCTCACCAAAGTTCCGAATGAATCCATACTTTGATCTCAATTTCTTCCTGATTTTAAAAGTCTTTTATCGCTTCTCTTCGCAAAAAAAAATACGGAGGAAGACTACCGATAAGGTTCGTCTGGTTGAAAAAATCTGCATATTGAGTGGTCAAAAGCATTTGACGAAACGTTTGAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAAAACTAACCGAATATGACC</pcr_primer_p1>
		<pcr_primer_p2>GCTAGAAGACAAAAGTCCAATTA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TGTAAAACTAACCGAATATGACCCCTGGGACGAATGAAAGATGTTTTTCTATTTTTCGTTGTTCTTTTCTCGTTATGTTTCGACTGAAAATTGAACGTCAATTCTTCTTATCCCTTCGGTTTCTTTGGGAAACAGAATACCGAAAAATTAAAGTTTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTTCAAATTTATTAACATAAATTTTGATTGTTTAATTGGACTTTTGTCTTCTAGC</canonical_amplicon>
		<polymorphic_amplicon>TGTAAAACTAACCGAATATGACCCCTGGGACGAATGAAAGATGTTTTTCTATTTTTCGTWGTTCTTTTCTCGTTATGTTTCGACTGAAAATTGAACGTCAATTCTTCTTATCCCTTCGGTTTCTTTGGGAAACAGAATACCGAAAAATTAAAGTTTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTTCAAATTTATTAACATAAATTTTGATTGTTTAATTGGACTTTTGTCTTCTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13651</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>268854</contig_pos>
        <strand>+</strand>
        <context>AGTYCATGTT[C/G]CAATTCGCCG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCTCCGGTTACTGTAGCAGTTTTTTGGAACGAGAGAAAAGAGTTCATGTT</left_flank>
        <right_flank>CAATTCGCCGGAAAAAAATGCCAAAACAAAGCACTAGGAAGTGTTGTAAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTAATTTGCCCAATTATCAAAATAGACACTAAATGAGCTTTATCAAAGAAAAAAAAGGTCCCTGTTTTTGTCGTCATCACCCCTAGAAGCTCCCTTGTCTCTTCTCAACCCAACTAACTTTTCGAGTTGTTGTGTCTACTTTTTTTGGAAAAAAAATGAAAGAGGAGGACCACCAGAAATTTTAATTGAATACTTTGTCGTCCAAATGAGTCAGTTTTTTTTCAATGTTTTTTTTTCTGTGTTACATTTTTCATCTCCCTTTTTTCTCTCTCTCTCTCAAGTTTTTCGCACTTGTTACTCATATTCAGAGTAAGGGGAATCAGAAAATTAAGAGAGTTTGGAGAAAACGTCCTTTCTAGAAGTTTCCGGTACCCTCTAACCGATTCAAATTTCCGTTTTTTTTTCTTCTTTAAAATTCAAAACGACTTCTCACAACTCTCAAATTACTCTCCGGTTACTGTAGCAGTTTTTTGGAACGAGAGAAAAGAGTTCATGTTGCAATTCGCCGGAAAAAAATGCCAAAACAAAGCACTAGGAAGTGTTGTAAAACTAACCGAATATGACCCCTGGGACGAATGAAAGATGTTTTTCTATTTTTCGTTGTTCTTTTCTCGTTATGTTTCGACTGAAAATTGAACGTCAATTCTTCTTATCCCTTCGGTTTCTTTGGGAAACAGAATACCGAAAAATTAAAGTTTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTTCAAATTTATTAACATAAATTTTGATTGTTTAATTGGACTTTTGTCTTCTAGCGGTTTCTGAAATTCCAGAGAAGTACAAGGAAAAAGTCCAAAATATAGGTCTTCCTTGAAATTTTTAAAGACTTGCCCTCTATGATTTTTAGAATTTTTAGACCTGCACTTCTTTTTAAAAACCTTCTTCTCAATTTTCTCCTCTCACCAAAGTTCCGAATGAATCCATACTTTGATCTCAATTTCTTCCTGATTTTAAAAGTCTTTTATCGCTTCT</canonical>
            <polymorphic>TTCTAATTTGCCCAATTATCAAAATAGACACTAAATGAGCTTTATCAAAGAAAAAAAAGGTCCCTGTTTTTGTCGTCATCACCCCTAGAAGCTCCCTTGTCTCTTCTCAACCCAACTAACTTTTCGAGTTGTTGTGTCTACTTTTTTTGGAAAAAAAATGAAAGAGGAGGACCACCAGAAATTTTAATTGAATACTTTGTCGTCCAAATGAGTCAGTTTTTTTTCAATGTTTTTTTTTCTGTGTTACATTTTTCATCTCCCTTTTTTCTCTCTCTCTCTCAAGTTTTTCGCACTTGTTACTCATATTCAGAGTAAGGGGAATCAGAAAATTAAGAGAGTTTGGAGAAAACGTCCTTTCTAGAAGTTTCCGGTACCCTCTAACCGATTCAAATTTCCGTTTTTTTTTCTTCTTTAAAATTCAAAACGACTTCTCACAACTCTCAAATTACTCTCCGGTTACTGTAGCAGTTTTTTGGAACGAGAGAAAAGAGTTCATGTTSCAATTCGCCGGAAAAAAATGCCAAAACAAAGCACTAGGAAGTGTTGTAAAACTAACCGAATATGACCCCTGGGACGAATGAAAGATGTTTTTCTATTTTTCGTTGTTCTTTTCTCGTTATGTTTCGACTGAAAATTGAACGTCAATTCTTCTTATCCCTTCGGTTTCTTTGGGAAACAGAATACCGAAAAATTAAAGTTTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTTCAAATTTATTAACATAAATTTTGATTGTTTAATTGGACTTTTGTCTTCTAGCGGTTTCTGAAATTCCAGAGAAGTACAAGGAAAAAGTCCAAAATATAGGTCTTCCTTGAAATTTTTAAAGACTTGCCCTCTATGATTTTTAGAATTTTTAGACCTGCACTTCTTTTTAAAAACCTTCTTCTCAATTTTCTCCTCTCACCAAAGTTCCGAATGAATCCATACTTTGATCTCAATTTCTTCCTGATTTTAAAAGTCTTTTATCGCTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 207 182 111</canonical_bands>
                <polymorphic_bands>707 182 111</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAAGGGGAATCAGAAAATTAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCGGTTAGTTTTACAACACTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTAAGGGGAATCAGAAAATTAAGAGAGTTTGGAGAAAACGTCCTTTCTAGAAGTTTCCGGTACCCTCTAACCGATTCAAATTTCCGTTTTTTTTTCTTCTTTAAAATTCAAAACGACTTCTCACAACTCTCAAATTACTCTCCGGTTACTGTAGCAGTTTTTTGGAACGAGAGAAAAGAGTTCATGTTGCAATTCGCCGGAAAAAAATGCCAAAACAAAGCACTAGGAAGTGTTGTAAAACTAACCGAA</canonical_amplicon>
		<polymorphic_amplicon>GTAAGGGGAATCAGAAAATTAAGAGAGTTTGGAGAAAACGTCCTTTCTAGAAGTTTCCGGTACCCTCTAACCGATTCAAATTTCCGTTTTTTTTTCTTCTTTAAAATTCAAAACGACTTCTCACAACTCTCAAATTACTCTCCGGTTACTGTAGCAGTTTTTTGGAACGAGAGAAAAGAGTTCATGTTSCAATTCGCCGGAAAAAAATGCCAAAACAAAGCACTAGGAAGTGTTGTAAAACTAACCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13652</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>268847</contig_pos>
        <strand>+</strand>
        <context>AGAAAAGAGT[C/T]CATGTTSCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTACTCTCCGGTTACTGTAGCAGTTTTTTGGAACGAGAGAAAAGAGT</left_flank>
        <right_flank>CATGTTGCAATTCGCCGGAAAAAAATGCCAAAACAAAGCACTAGGAAGTG</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCATCATTCTAATTTGCCCAATTATCAAAATAGACACTAAATGAGCTTTATCAAAGAAAAAAAAGGTCCCTGTTTTTGTCGTCATCACCCCTAGAAGCTCCCTTGTCTCTTCTCAACCCAACTAACTTTTCGAGTTGTTGTGTCTACTTTTTTTGGAAAAAAAATGAAAGAGGAGGACCACCAGAAATTTTAATTGAATACTTTGTCGTCCAAATGAGTCAGTTTTTTTTCAATGTTTTTTTTTCTGTGTTACATTTTTCATCTCCCTTTTTTCTCTCTCTCTCTCAAGTTTTTCGCACTTGTTACTCATATTCAGAGTAAGGGGAATCAGAAAATTAAGAGAGTTTGGAGAAAACGTCCTTTCTAGAAGTTTCCGGTACCCTCTAACCGATTCAAATTTCCGTTTTTTTTTCTTCTTTAAAATTCAAAACGACTTCTCACAACTCTCAAATTACTCTCCGGTTACTGTAGCAGTTTTTTGGAACGAGAGAAAAGAGTTCATGTTGCAATTCGCCGGAAAAAAATGCCAAAACAAAGCACTAGGAAGTGTTGTAAAACTAACCGAATATGACCCCTGGGACGAATGAAAGATGTTTTTCTATTTTTCGTTGTTCTTTTCTCGTTATGTTTCGACTGAAAATTGAACGTCAATTCTTCTTATCCCTTCGGTTTCTTTGGGAAACAGAATACCGAAAAATTAAAGTTTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTTCAAATTTATTAACATAAATTTTGATTGTTTAATTGGACTTTTGTCTTCTAGCGGTTTCTGAAATTCCAGAGAAGTACAAGGAAAAAGTCCAAAATATAGGTCTTCCTTGAAATTTTTAAAGACTTGCCCTCTATGATTTTTAGAATTTTTAGACCTGCACTTCTTTTTAAAAACCTTCTTCTCAATTTTCTCCTCTCACCAAAGTTCCGAATGAATCCATACTTTGATCTCAATTTCTTCCTGATTTTAAAAGTCTTTTAT</canonical>
            <polymorphic>TTCATCATTCTAATTTGCCCAATTATCAAAATAGACACTAAATGAGCTTTATCAAAGAAAAAAAAGGTCCCTGTTTTTGTCGTCATCACCCCTAGAAGCTCCCTTGTCTCTTCTCAACCCAACTAACTTTTCGAGTTGTTGTGTCTACTTTTTTTGGAAAAAAAATGAAAGAGGAGGACCACCAGAAATTTTAATTGAATACTTTGTCGTCCAAATGAGTCAGTTTTTTTTCAATGTTTTTTTTTCTGTGTTACATTTTTCATCTCCCTTTTTTCTCTCTCTCTCTCAAGTTTTTCGCACTTGTTACTCATATTCAGAGTAAGGGGAATCAGAAAATTAAGAGAGTTTGGAGAAAACGTCCTTTCTAGAAGTTTCCGGTACCCTCTAACCGATTCAAATTTCCGTTTTTTTTTCTTCTTTAAAATTCAAAACGACTTCTCACAACTCTCAAATTACTCTCCGGTTACTGTAGCAGTTTTTTGGAACGAGAGAAAAGAGTYCATGTTGCAATTCGCCGGAAAAAAATGCCAAAACAAAGCACTAGGAAGTGTTGTAAAACTAACCGAATATGACCCCTGGGACGAATGAAAGATGTTTTTCTATTTTTCGTTGTTCTTTTCTCGTTATGTTTCGACTGAAAATTGAACGTCAATTCTTCTTATCCCTTCGGTTTCTTTGGGAAACAGAATACCGAAAAATTAAAGTTTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTTCAAATTTATTAACATAAATTTTGATTGTTTAATTGGACTTTTGTCTTCTAGCGGTTTCTGAAATTCCAGAGAAGTACAAGGAAAAAGTCCAAAATATAGGTCTTCCTTGAAATTTTTAAAGACTTGCCCTCTATGATTTTTAGAATTTTTAGACCTGCACTTCTTTTTAAAAACCTTCTTCTCAATTTTCTCCTCTCACCAAAGTTCCGAATGAATCCATACTTTGATCTCAATTTCTTCCTGATTTTAAAAGTCTTTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAAGGGGAATCAGAAAATTAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCGGTTAGTTTTACAACACTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTAAGGGGAATCAGAAAATTAAGAGAGTTTGGAGAAAACGTCCTTTCTAGAAGTTTCCGGTACCCTCTAACCGATTCAAATTTCCGTTTTTTTTTCTTCTTTAAAATTCAAAACGACTTCTCACAACTCTCAAATTACTCTCCGGTTACTGTAGCAGTTTTTTGGAACGAGAGAAAAGAGTTCATGTTGCAATTCGCCGGAAAAAAATGCCAAAACAAAGCACTAGGAAGTGTTGTAAAACTAACCGAA</canonical_amplicon>
		<polymorphic_amplicon>GTAAGGGGAATCAGAAAATTAAGAGAGTTTGGAGAAAACGTCCTTTCTAGAAGTTTCCGGTACCCTCTAACCGATTCAAATTTCCGTTTTTTTTTCTTCTTTAAAATTCAAAACGACTTCTCACAACTCTCAAATTACTCTCCGGTTACTGTAGCAGTTTTTTGGAACGAGAGAAAAGAGTYCATGTTGCAATTCGCCGGAAAAAAATGCCAAAACAAAGCACTAGGAAGTGTTGTAAAACTAACCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13653</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>303992</contig_pos>
        <strand>+</strand>
        <context>TGTACCATTT[A/C]GCACTGTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCAGTGTCCGAGACTCTACCCAATATAGTCACTTAGTGTCTGTACCATTT</left_flank>
        <right_flank>GCACTGTTCTGCTAACTGTAGATGGTACATATTTACACCTTCTTCTCAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTCTCACTGCTCCTCGTTATTGTCTTTTCGGAGACACTGTCAACGTGGCATCCCGAATGGAGTCTACCAGTGAGCCGGAGAAAATTCAAATGAGTCAAGAGGCGCGTGACTTCTGCCTCCGCTACTATCAAGAGTTCCAAATCGTGCTTCGTGGCGTCGTTGAGGCAAAAGGCAAGGGACCGGTGACGACGTACTGGCTGTTGGGAAAACAATCCGAGAGCCAGATGCAACAAAAAAATTTCTCACAGCTCGGTATCTAGACAAATCTCCGTATAAGAGCCCCGCTTAGATTCTTGTGTATTTCCCTTAATGCATTATATCCTCGGATCAACGATGCATTTACTTGATTATACATATATTTTTGAGAATTCCAGTTAATAAATAATATATTCTGTATGTTGTGAATTCGAATATTTCAGAGGGATAGAGGAAGAGGGAAAATCATACCTCAGTGTCCGAGACTCTACCCAATATAGTCACTTAGTGTCTGTACCATTTAGCACTGTTCTGCTAACTGTAGATGGTACATATTTACACCTTCTTCTCAACATGTGCGGGAATTTTCGAAAAATAGGTGGTTCTGGGAAAGTGTGTTGGTGAGTGAACATGACTTTGGTGTAAATATGGGCATTCAATTAGCAATAGTGTAAAGTTGATAATTGGTGGGTTCAAACGGCTAAGAAGAAATACTCAGAGAATCAAAGAATGAGTTGGTGCATCTGGACTGATGATTGCTATATGGGTTGGTGATAATTGAACACCAGAACATCTTAATTTTAAAGAAAAAACATTTCGATTCTTGTAAAACTGATGCTTTAAAATCAATATACCAAAGCCTAACGGTTTCATTACTCCTAAATCCTGCCCTCAAAAGTTAAGCTTTCTCGAAGTACAAAGATTACTTGACCTTCTTTGCTTTTGTCCAATTCTTCCGCTTCTTTTCAAATTCAAAAAAAAAAACTTTCTTCTTTCTTTTTGAATGTTTGCCATCGTCGTTGT</canonical>
            <polymorphic>GGTCTCACTGCTCCTCGTTATTGTCTTTTCGGAGACACTGTCAACGTGGCATCCCGAATGGAGTCTACCAGTGAGCCGGAGAAAATTCAAATGAGTCAAGAGGCGCGTGACTTCTGCCTCCGCTACTATCAAGAGTTCCAAATCGTGCTTCGTGGCGTCGTTGAGGCAAAAGGCAAGGGACCGGTGACGACGTACTGGCTGTTGGGAAAACAATCCGAGAGCCAGATGCAACAAAAAAATTTCTCACAGCTCGGTATCTAGACAAATCTCCGTATAAGAGCCCCGCTTAGATTCTTGTGTATTTCCCTTAATGCATTATATCCTCGGATCAACGATGCATTTACTTGATTATACATATATTTTTGAGAATTCCAGTTAATAAATAATATATTCTGTATGTTGTGAATTCGAATATTTCAGAGGGATAGAGGAAGAGGGAAAATCATACCTCAGTGTCCGAGACTCTACCCAATATAGTCACTTAGTGTCTGTACCATTTMGCACTGTTCTGCTAACTGTAGATGGTACATATTTACACCTTCTTCTCAACATGTGCGGGAATTTTCGAAAAATAGGTGGTTCTGGGAAAGTGTGTTGGTGAGTGAACATGACTTTGGTGTAAATATGGGCATTCAATTAGCAATAGTGTAAAGTTGATAATTGGTGGGTTCAAACGGCTAAGAAGAAATACTCAGAGAATCAAAGAATGAGTTGGTGCATCTGGACTGATGATTGCTATATGGGTTGGTGATAATTGAACACCAGAACATCTTAATTTTAAAGAAAAAACATTTCGATTCTTGTAAAACTGATGCTTTAAAATCAATATACCAAAGCCTAACGGTTTCATTACTCCTAAATCCTGCCCTCAAAAGTTAAGCTTTCTCGAAGTACAAAGATTACTTGACCTTCTTTGCTTTTGTCCAATTCTTCCGCTTCTTTTCAAATTCAAAAAAAAAAACTTTCTTCTTTCTTTTTGAATGTTTGCCATCGTCGTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGAGGAAGAGGGAAAATCATA</pcr_primer_p1>
		<pcr_primer_p2>CCACCAATTATCAACTTTACACT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATAGAGGAAGAGGGAAAATCATACCTCAGTGTCCGAGACTCTACCCAATATAGTCACTTAGTGTCTGTACCATTTAGCACTGTTCTGCTAACTGTAGATGGTACATATTTACACCTTCTTCTCAACATGTGCGGGAATTTTCGAAAAATAGGTGGTTCTGGGAAAGTGTGTTGGTGAGTGAACATGACTTTGGTGTAAATATGGGCATTCAATTAGCAATAGTGTAAAGTTGATAATTGGTGG</canonical_amplicon>
		<polymorphic_amplicon>ATAGAGGAAGAGGGAAAATCATACCTCAGTGTCCGAGACTCTACCCAATATAGTCACTTAGTGTCTGTACCATTTMGCACTGTTCTGCTAACTGTAGATGGTACATATTTACACCTTCTTCTCAACATGTGCGGGAATTTTCGAAAAATAGGTGGTTCTGGGAAAGTGTGTTGGTGAGTGAACATGACTTTGGTGTAAATATGGGCATTCAATTAGCAATAGTGTAAAGTTGATAATTGGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13655</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>304200</contig_pos>
        <strand>+</strand>
        <context>AATCAAAGAA[A/T]GAGTTGGTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAATTGGTGGGTTCAAACGGCTAAGAAGAAATACTCAGAGAATCAAAGAA</left_flank>
        <right_flank>GAGTTGGTGCATCTGGACTGATGATTGCTATATGGGTTGGTGATAATTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAATCCGAGAGCCAGATGCAACAAAAAAATTTCTCACAGCTCGGTATCTAGACAAATCTCCGTATAAGAGCCCCGCTTAGATTCTTGTGTATTTCCCTTAATGCATTATATCCTCGGATCAACGATGCATTTACTTGATTATACATATATTTTTGAGAATTCCAGTTAATAAATAATATATTCTGTATGTTGTGAATTCGAATATTTCAGAGGGATAGAGGAAGAGGGAAAATCATACCTCAGTGTCCGAGACTCTACCCAATATAGTCACTTAGTGTCTGTACCATTTAGCACTGTTCTGCTAACTGTAGATGGTACATATTTACACCTTCTTCTCAACATGTGCGGGAATTTTCGAAAAATAGGTGGTTCTGGGAAAGTGTGTTGGTGAGTGAACATGACTTTGGTGTAAATATGGGCATTCAATTAGCAATAGTGTAAAGTTGATAATTGGTGGGTTCAAACGGCTAAGAAGAAATACTCAGAGAATCAAAGAATGAGTTGGTGCATCTGGACTGATGATTGCTATATGGGTTGGTGATAATTGAACACCAGAACATCTTAATTTTAAAGAAAAAACATTTCGATTCTTGTAAAACTGATGCTTTAAAATCAATATACCAAAGCCTAACGGTTTCATTACTCCTAAATCCTGCCCTCAAAAGTTAAGCTTTCTCGAAGTACAAAGATTACTTGACCTTCTTTGCTTTTGTCCAATTCTTCCGCTTCTTTTCAAATTCAAAAAAAAAAACTTTCTTCTTTCTTTTTGAATGTTTGCCATCGTCGTTGTCTCATCACTTATACATTCCAACTTCTTGTTTGTCGTCTTCTTGTACATAATTACGTATTCCACCTTTTTTTCTTTTTTGTCGGTCCCGGTGATAATAAAGTGATATAATTCTAATGATAATGATGTTTTTTATAGAGACTATCAGTGGTACGCACAAGAATGTGTTTGAATGGGTAAAGGTTTTTCTCAAATTGTAAGACTGACATGA</canonical>
            <polymorphic>AACAATCCGAGAGCCAGATGCAACAAAAAAATTTCTCACAGCTCGGTATCTAGACAAATCTCCGTATAAGAGCCCCGCTTAGATTCTTGTGTATTTCCCTTAATGCATTATATCCTCGGATCAACGATGCATTTACTTGATTATACATATATTTTTGAGAATTCCAGTTAATAAATAATATATTCTGTATGTTGTGAATTCGAATATTTCAGAGGGATAGAGGAAGAGGGAAAATCATACCTCAGTGTCCGAGACTCTACCCAATATAGTCACTTAGTGTCTGTACCATTTAGCACTGTTCTGCTAACTGTAGATGGTACATATTTACACCTTCTTCTCAACATGTGCGGGAATTTTCGAAAAATAGGTGGTTCTGGGAAAGTGTGTTGGTGAGTGAACATGACTTTGGTGTAAATATGGGCATTCAATTAGCAATAGTGTAAAGTTGATAATTGGTGGGTTCAAACGGCTAAGAAGAAATACTCAGAGAATCAAAGAAWGAGTTGGTGCATCTGGACTGATGATTGCTATATGGGTTGGTGATAATTGAACACCAGAACATCTTAATTTTAAAGAAAAAACATTTCGATTCTTGTAAAACTGATGCTTTAAAATCAATATACCAAAGCCTAACGGTTTCATTACTCCTAAATCCTGCCCTCAAAAGTTAAGCTTTCTCGAAGTACAAAGATTACTTGACCTTCTTTGCTTTTGTCCAATTCTTCCGCTTCTTTTCAAATTCAAAAAAAAAAACTTTCTTCTTTCTTTTTGAATGTTTGCCATCGTCGTTGTCTCATCACTTATACATTCCAACTTCTTGTTTGTCGTCTTCTTGTACATAATTACGTATTCCACCTTTTTTTCTTTTTTGTCGGTCCCGGTGATAATAAAGTGATATAATTCTAATGATAATGATGTTTTTTATAGAGACTATCAGTGGTACGCACAAGAATGTGTTTGAATGGGTAAAGGTTTTTCTCAAATTGTAAGACTGACATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTAAATATGGGCATTCAATTA</pcr_primer_p1>
		<pcr_primer_p2>GCAGGATTTAGGAGTAATGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGTAAATATGGGCATTCAATTAGCAATAGTGTAAAGTTGATAATTGGTGGGTTCAAACGGCTAAGAAGAAATACTCAGAGAATCAAAGAATGAGTTGGTGCATCTGGACTGATGATTGCTATATGGGTTGGTGATAATTGAACACCAGAACATCTTAATTTTAAAGAAAAAACATTTCGATTCTTGTAAAACTGATGCTTTAAAATCAATATACCAAAGCCTAACGGTTTCATTACTCCTAAATCCTGC</canonical_amplicon>
		<polymorphic_amplicon>GTGTAAATATGGGCATTCAATTAGCAATAGTGTAAAGTTGATAATTGGTGGGTTCAAACGGCTAAGAAGAAATACTCAGAGAATCAAAGAAWGAGTTGGTGCATCTGGACTGATGATTGCTATATGGGTTGGTGATAATTGAACACCAGAACATCTTAATTTTAAAGAAAAAACATTTCGATTCTTGTAAAACTGATGCTTTAAAATCAATATACCAAAGCCTAACGGTTTCATTACTCCTAAATCCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13656</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>304254</contig_pos>
        <strand>+</strand>
        <context>TAATTGAACA[C/T]CAGAACATCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGTGCATCTGGACTGATGATTGCTATATGGGTTGGTGATAATTGAACA</left_flank>
        <right_flank>CAGAACATCTTAATTTTAAAGAAAAAACATTTCGATTCTTGTAAAACTGA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAATCTCCGTATAAGAGCCCCGCTTAGATTCTTGTGTATTTCCCTTAATGCATTATATCCTCGGATCAACGATGCATTTACTTGATTATACATATATTTTTGAGAATTCCAGTTAATAAATAATATATTCTGTATGTTGTGAATTCGAATATTTCAGAGGGATAGAGGAAGAGGGAAAATCATACCTCAGTGTCCGAGACTCTACCCAATATAGTCACTTAGTGTCTGTACCATTTAGCACTGTTCTGCTAACTGTAGATGGTACATATTTACACCTTCTTCTCAACATGTGCGGGAATTTTCGAAAAATAGGTGGTTCTGGGAAAGTGTGTTGGTGAGTGAACATGACTTTGGTGTAAATATGGGCATTCAATTAGCAATAGTGTAAAGTTGATAATTGGTGGGTTCAAACGGCTAAGAAGAAATACTCAGAGAATCAAAGAATGAGTTGGTGCATCTGGACTGATGATTGCTATATGGGTTGGTGATAATTGAACACCAGAACATCTTAATTTTAAAGAAAAAACATTTCGATTCTTGTAAAACTGATGCTTTAAAATCAATATACCAAAGCCTAACGGTTTCATTACTCCTAAATCCTGCCCTCAAAAGTTAAGCTTTCTCGAAGTACAAAGATTACTTGACCTTCTTTGCTTTTGTCCAATTCTTCCGCTTCTTTTCAAATTCAAAAAAAAAAACTTTCTTCTTTCTTTTTGAATGTTTGCCATCGTCGTTGTCTCATCACTTATACATTCCAACTTCTTGTTTGTCGTCTTCTTGTACATAATTACGTATTCCACCTTTTTTTCTTTTTTGTCGGTCCCGGTGATAATAAAGTGATATAATTCTAATGATAATGATGTTTTTTATAGAGACTATCAGTGGTACGCACAAGAATGTGTTTGAATGGGTAAAGGTTTTTCTCAAATTGTAAGACTGACATGACATATTTTCGCGTTTTCAGATTTTCGGCTGCGGCTGTCGTCTTTTGGGCGAAAG</canonical>
            <polymorphic>CAAATCTCCGTATAAGAGCCCCGCTTAGATTCTTGTGTATTTCCCTTAATGCATTATATCCTCGGATCAACGATGCATTTACTTGATTATACATATATTTTTGAGAATTCCAGTTAATAAATAATATATTCTGTATGTTGTGAATTCGAATATTTCAGAGGGATAGAGGAAGAGGGAAAATCATACCTCAGTGTCCGAGACTCTACCCAATATAGTCACTTAGTGTCTGTACCATTTAGCACTGTTCTGCTAACTGTAGATGGTACATATTTACACCTTCTTCTCAACATGTGCGGGAATTTTCGAAAAATAGGTGGTTCTGGGAAAGTGTGTTGGTGAGTGAACATGACTTTGGTGTAAATATGGGCATTCAATTAGCAATAGTGTAAAGTTGATAATTGGTGGGTTCAAACGGCTAAGAAGAAATACTCAGAGAATCAAAGAATGAGTTGGTGCATCTGGACTGATGATTGCTATATGGGTTGGTGATAATTGAACAYCAGAACATCTTAATTTTAAAGAAAAAACATTTCGATTCTTGTAAAACTGATGCTTTAAAATCAATATACCAAAGCCTAACGGTTTCATTACTCCTAAATCCTGCCCTCAAAAGTTAAGCTTTCTCGAAGTACAAAGATTACTTGACCTTCTTTGCTTTTGTCCAATTCTTCCGCTTCTTTTCAAATTCAAAAAAAAAAACTTTCTTCTTTCTTTTTGAATGTTTGCCATCGTCGTTGTCTCATCACTTATACATTCCAACTTCTTGTTTGTCGTCTTCTTGTACATAATTACGTATTCCACCTTTTTTTCTTTTTTGTCGGTCCCGGTGATAATAAAGTGATATAATTCTAATGATAATGATGTTTTTTATAGAGACTATCAGTGGTACGCACAAGAATGTGTTTGAATGGGTAAAGGTTTTTCTCAAATTGTAAGACTGACATGACATATTTTCGCGTTTTCAGATTTTCGGCTGCGGCTGTCGTCTTTTGGGCGAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>246 105 98 55 51 51 45 37 34 33 29 29 25 23 18 18 16 15 14 11 11 10 7 7 6 4 2</canonical_bands>
                <polymorphic_bands>257 105 98 55 51 51 45 37 34 33 29 29 25 23 18 18 16 15 14 11 10 7 7 6 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGTAAATATGGGCATTCAATTA</pcr_primer_p1>
		<pcr_primer_p2>GCAGGATTTAGGAGTAATGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGTAAATATGGGCATTCAATTAGCAATAGTGTAAAGTTGATAATTGGTGGGTTCAAACGGCTAAGAAGAAATACTCAGAGAATCAAAGAATGAGTTGGTGCATCTGGACTGATGATTGCTATATGGGTTGGTGATAATTGAACACCAGAACATCTTAATTTTAAAGAAAAAACATTTCGATTCTTGTAAAACTGATGCTTTAAAATCAATATACCAAAGCCTAACGGTTTCATTACTCCTAAATCCTGC</canonical_amplicon>
		<polymorphic_amplicon>GTGTAAATATGGGCATTCAATTAGCAATAGTGTAAAGTTGATAATTGGTGGGTTCAAACGGCTAAGAAGAAATACTCAGAGAATCAAAGAATGAGTTGGTGCATCTGGACTGATGATTGCTATATGGGTTGGTGATAATTGAACAYCAGAACATCTTAATTTTAAAGAAAAAACATTTCGATTCTTGTAAAACTGATGCTTTAAAATCAATATACCAAAGCCTAACGGTTTCATTACTCCTAAATCCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13657</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>304323</contig_pos>
        <strand>+</strand>
        <context>AATCAATATA[A/C]CAAAGCCTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGAAAAAACATTTCGATTCTTGTAAAACTGATGCTTTAAAATCAATATA</left_flank>
        <right_flank>CAAAGCCTAACGGTTTCATTACTCCTAAATCCTGCCCTCAAAAGTTAAGC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGATGCATTTACTTGATTATACATATATTTTTGAGAATTCCAGTTAATAAATAATATATTCTGTATGTTGTGAATTCGAATATTTCAGAGGGATAGAGGAAGAGGGAAAATCATACCTCAGTGTCCGAGACTCTACCCAATATAGTCACTTAGTGTCTGTACCATTTAGCACTGTTCTGCTAACTGTAGATGGTACATATTTACACCTTCTTCTCAACATGTGCGGGAATTTTCGAAAAATAGGTGGTTCTGGGAAAGTGTGTTGGTGAGTGAACATGACTTTGGTGTAAATATGGGCATTCAATTAGCAATAGTGTAAAGTTGATAATTGGTGGGTTCAAACGGCTAAGAAGAAATACTCAGAGAATCAAAGAATGAGTTGGTGCATCTGGACTGATGATTGCTATATGGGTTGGTGATAATTGAACACCAGAACATCTTAATTTTAAAGAAAAAACATTTCGATTCTTGTAAAACTGATGCTTTAAAATCAATATACCAAAGCCTAACGGTTTCATTACTCCTAAATCCTGCCCTCAAAAGTTAAGCTTTCTCGAAGTACAAAGATTACTTGACCTTCTTTGCTTTTGTCCAATTCTTCCGCTTCTTTTCAAATTCAAAAAAAAAAACTTTCTTCTTTCTTTTTGAATGTTTGCCATCGTCGTTGTCTCATCACTTATACATTCCAACTTCTTGTTTGTCGTCTTCTTGTACATAATTACGTATTCCACCTTTTTTTCTTTTTTGTCGGTCCCGGTGATAATAAAGTGATATAATTCTAATGATAATGATGTTTTTTATAGAGACTATCAGTGGTACGCACAAGAATGTGTTTGAATGGGTAAAGGTTTTTCTCAAATTGTAAGACTGACATGACATATTTTCGCGTTTTCAGATTTTCGGCTGCGGCTGTCGTCTTTTGGGCGAAAGTTAAGGGTTTGTTGTCTTTTGAGCGAACTATGAGCACCTTTTGGGCGAAGTTGGGGCGCCACCGTCTTT</canonical>
            <polymorphic>ACGATGCATTTACTTGATTATACATATATTTTTGAGAATTCCAGTTAATAAATAATATATTCTGTATGTTGTGAATTCGAATATTTCAGAGGGATAGAGGAAGAGGGAAAATCATACCTCAGTGTCCGAGACTCTACCCAATATAGTCACTTAGTGTCTGTACCATTTAGCACTGTTCTGCTAACTGTAGATGGTACATATTTACACCTTCTTCTCAACATGTGCGGGAATTTTCGAAAAATAGGTGGTTCTGGGAAAGTGTGTTGGTGAGTGAACATGACTTTGGTGTAAATATGGGCATTCAATTAGCAATAGTGTAAAGTTGATAATTGGTGGGTTCAAACGGCTAAGAAGAAATACTCAGAGAATCAAAGAATGAGTTGGTGCATCTGGACTGATGATTGCTATATGGGTTGGTGATAATTGAACACCAGAACATCTTAATTTTAAAGAAAAAACATTTCGATTCTTGTAAAACTGATGCTTTAAAATCAATATAMCAAAGCCTAACGGTTTCATTACTCCTAAATCCTGCCCTCAAAAGTTAAGCTTTCTCGAAGTACAAAGATTACTTGACCTTCTTTGCTTTTGTCCAATTCTTCCGCTTCTTTTCAAATTCAAAAAAAAAAACTTTCTTCTTTCTTTTTGAATGTTTGCCATCGTCGTTGTCTCATCACTTATACATTCCAACTTCTTGTTTGTCGTCTTCTTGTACATAATTACGTATTCCACCTTTTTTTCTTTTTTGTCGGTCCCGGTGATAATAAAGTGATATAATTCTAATGATAATGATGTTTTTTATAGAGACTATCAGTGGTACGCACAAGAATGTGTTTGAATGGGTAAAGGTTTTTCTCAAATTGTAAGACTGACATGACATATTTTCGCGTTTTCAGATTTTCGGCTGCGGCTGTCGTCTTTTGGGCGAAAGTTAAGGGTTTGTTGTCTTTTGAGCGAACTATGAGCACCTTTTGGGCGAAGTTGGGGCGCCACCGTCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATATGGGTTGGTGATAATTGA</pcr_primer_p1>
		<pcr_primer_p2>AACATTCAAAAAGAAAGAAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATATGGGTTGGTGATAATTGAACACCAGAACATCTTAATTTTAAAGAAAAAACATTTCGATTCTTGTAAAACTGATGCTTTAAAATCAATATACCAAAGCCTAACGGTTTCATTACTCCTAAATCCTGCCCTCAAAAGTTAAGCTTTCTCGAAGTACAAAGATTACTTGACCTTCTTTGCTTTTGTCCAATTCTTCCGCTTCTTTTCAAATTCAAAAAAAAAAACTTTCTTCTTTCTTTTTGAATGTT</canonical_amplicon>
		<polymorphic_amplicon>CTATATGGGTTGGTGATAATTGAACACCAGAACATCTTAATTTTAAAGAAAAAACATTTCGATTCTTGTAAAACTGATGCTTTAAAATCAATATAMCAAAGCCTAACGGTTTCATTACTCCTAAATCCTGCCCTCAAAAGTTAAGCTTTCTCGAAGTACAAAGATTACTTGACCTTCTTTGCTTTTGTCCAATTCTTCCGCTTCTTTTCAAATTCAAAAAAAAAAACTTTCTTCTTTCTTTTTGAATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13658</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>307527</contig_pos>
        <strand>+</strand>
        <context>CTGAAGATCC[A/C]CCATTCGTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAATTCTAGAATTGATGAGTTATGAGGTGAGCACTTGAACCTGAAGATCC</left_flank>
        <right_flank>CCATTCGTTGGCAGGAAAGTGTGTTAATTATGTATTGTATTGTGTTCGAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATCGCTCGTCAAACAGATCATTCAACTATCCTCCTATCCCCCAGCCCCTCTCTCGGCAATGAATCTTCCGGCTCACTGCGGGACGTCACCCCCTTCTTCTTCTTCTACCCCTATTATAAAAACGTTGACTCCTCGAAACGAAAACGTCTTTGCGGCACATTTGCACAGGTGTTCGTCGTCTGTCTCTTTTCTTTTCTTTTACCACTACCCGCCAAATGATACACCAATCATCTTTGTTGCGAAAACTTTGCCCCCTCTTTTTTTCTAATACCAACAATCTAATCGAACACAGAAGTGACCCTAAAAAGGACACCTGTTTGGTTTCGATAATTGGAAAAAGAGATGTAGAGAGATGATTATCCTGACTTTCACCTGCCTCCGTCAATCCACGTCATCTACAGGACGGTTTGAAAAATAAACACCTGCCAACCCCACCCCACGGGAACACAATTCTAGAATTGATGAGTTATGAGGTGAGCACTTGAACCTGAAGATCCCCCATTCGTTGGCAGGAAAGTGTGTTAATTATGTATTGTATTGTGTTCGAGGTATGAAACTTGTGGAGGGGGTCCTATAGGTAATAACGGGTTAGAATTAAAATCAAGAGGGTGCTCAGTGACGTGGATTGTCATTCTATTGGTTAGTATGACTACATGATCTTATAGGTTCTGTCGAATAGATTTTCGGTATACTAGGGATTCTATCCGTTCAGCAATATGATTTTAGGTAAACCGTTCACTAGAAAAATTGACAATTTGGTGCTAACAGTTGCGTTCAAATTTACAGTTATGTGAGAACCGACGCCTGCGAACAGCTAACATATATAGATTAATGACACCAAGATGTATATATGTTCTTCTGGGAAAAAAATTAACGATTACAGTATAATTACTTCTGTTTGGTGGTTTAAAAAAAAGGATAACGTCCTTGAACATATACCAAGAATTTACCGTACTTCCTGTTATGTCAACTTTGAGCTCAATTATCTCGATTCCTGT</canonical>
            <polymorphic>CGATCGCTCGTCAAACAGATCATTCAACTATCCTCCTATCCCCCAGCCCCTCTCTCGGCAATGAATCTTCCGGCTCACTGCGGGACGTCACCCCCTTCTTCTTCTTCTACCCCTATTATAAAAACGTTGACTCCTCGAAACGAAAACGTCTTTGCGGCACATTTGCACAGGTGTTCGTCGTCTGTCTCTTTTCTTTTCTTTTACCACTACCCGCCAAATGATACACCAATCATCTTTGTTGCGAAAACTTTGCCCCCTCTTTTTTTCTAATACCAACAATCTAATCGAACACAGAAGTGACCCTAAAAAGGACACCTGTTTGGTTTCGATAATTGGAAAAAGAGATGTAGAGAGATGATTATCCTGACTTTCACCTGCCTCCGTCAATCCACGTCATCTACAGGACGGTTTGAAAAATAAACACCTGCCAACCCCACCCCACGGGAACACAATTCTAGAATTGATGAGTTATGAGGTGAGCACTTGAACCTGAAGATCCMCCATTCGTTGGCAGGAAAGTGTGTTAATTATGTATTGTATTGTGTTCGAGGTATGAAACTTGTGGAGGGGGTCCTATAGGTAATAACGGGTTAGAATTAAAATCAAGAGGGTGCTCAGTGACGTGGATTGTCATTCTATTGGTTAGTATGACTACATGATCTTATAGGTTCTGTCGAATAGATTTTCGGTATACTAGGGATTCTATCCGTTCAGCAATATGATTTTAGGTAAACCGTTCACTAGAAAAATTGACAATTTGGTGCTAACAGTTGCGTTCAAATTTACAGTTATGTGAGAACCGACGCCTGCGAACAGCTAACATATATAGATTAATGACACCAAGATGTATATATGTTCTTCTGGGAAAAAAATTAACGATTACAGTATAATTACTTCTGTTTGGTGGTTTAAAAAAAAGGATAACGTCCTTGAACATATACCAAGAATTTACCGTACTTCCTGTTATGTCAACTTTGAGCTCAATTATCTCGATTCCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGATGATTATCCTGACTTTCAC</pcr_primer_p1>
		<pcr_primer_p2>TTTAATTCTAACCCGTTATTACCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGATGATTATCCTGACTTTCACCTGCCTCCGTCAATCCACGTCATCTACAGGACGGTTTGAAAAATAAACACCTGCCAACCCCACCCCACGGGAACACAATTCTAGAATTGATGAGTTATGAGGTGAGCACTTGAACCTGAAGATCCCCCATTCGTTGGCAGGAAAGTGTGTTAATTATGTATTGTATTGTGTTCGAGGTATGAAACTTGTGGAGGGGGTCCTATAGGTAATAACGGGTTAGAATTAAA</canonical_amplicon>
		<polymorphic_amplicon>GAGATGATTATCCTGACTTTCACCTGCCTCCGTCAATCCACGTCATCTACAGGACGGTTTGAAAAATAAACACCTGCCAACCCCACCCCACGGGAACACAATTCTAGAATTGATGAGTTATGAGGTGAGCACTTGAACCTGAAGATCCMCCATTCGTTGGCAGGAAAGTGTGTTAATTATGTATTGTATTGTGTTCGAGGTATGAAACTTGTGGAGGGGGTCCTATAGGTAATAACGGGTTAGAATTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13660</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>322792</contig_pos>
        <strand>+</strand>
        <context>TTGTCTCTCT[C/T]GTTTTGGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATGCTGGATTCAATATGACCTGGACCGCGATTCTCTTCGTTGTCTCTCT</left_flank>
        <right_flank>GTTTTGGAAAGAATGGCAACATCTCAAGTCGATATTCCACCTCCACATTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGTGTGCTTCTGCTTTTTCGCTTTAGAATTTTTAGATGTTCTGATTTGCTTTCTCTTCATTTCGCTAACTTTTCATAATTTCTGACACAAAACGTTCATATTTCAGGAGTCCCCATACACTGTCGAGCAACTTTCTGATCCACGGCGTAATCCATTTGATGTTCAAGCCGACAATGGAGAAATCTGTATTTCGTTGAGAAGAAACGCCGTCTATTTCACTTCTGAAATGTTGCTCCCAGCTCTTATCACTTCTCTCTTCACTCTCGCTGCAGTCTTCTTCCAACTCTCAAAGACCCAACCAATTCTTCTTGGATTCTCTGTTGTTGCCCAGATCCTCTCTTTGATTCTGGTCTCTCAACGTCTTCCATCCTTCACCGCTCATACACCAACTATCTGTAAGTTTTCCAGAAGTTTTTTTAACTAATTCTCAATTATATTTCAGTGAAATATGCTGGATTCAATATGACCTGGACCGCGATTCTCTTCGTTGTCTCTCTTGTTTTGGAAAGAATGGCAACATCTCAAGTCGATATTCCACCTCCACATTCAGTTTCAACATTCTCGGGACTTGTTAACAAGATTCTTCCGATTCCGAAAAACTCGAAACACGAGGATTCAAGTCTTCAATATGCCGCATTTGCTCATGCTCTCAATCACGTCATTTTCGCTTTATCCACTGTTCTCTACTTTGTCGTTATCTTGTTCTCGTTTGTTTTCTGATTTAGGTCCTATCTTTTTTCTTCTTGTACAGTAGTTGTCAGTATCCACTGCTCAGTTTTGTCTAATAATTTCGCCATATCAGAGTTGTGTGTCTAATAAATAATTGAAGTAAAAAGAATGTTTCGAAAGATTGCCGATAATTACCCTGGGACTGATTGAAACGGGTATATCTTTAGACATAAGTATCTTGGAAGCACGAAAATTGGTAGAAATATAATTTTACATCTGATTCGGAGCTTCTGAAATTTTCAAAGCGATTCCTCAAATCTATTCATTGT</canonical>
            <polymorphic>CGAGTGTGCTTCTGCTTTTTCGCTTTAGAATTTTTAGATGTTCTGATTTGCTTTCTCTTCATTTCGCTAACTTTTCATAATTTCTGACACAAAACGTTCATATTTCAGGAGTCCCCATACACTGTCGAGCAACTTTCTGATCCACGGCGTAATCCATTTGATGTTCAAGCCGACAATGGAGAAATCTGTATTTCGTTGAGAAGAAACGCCGTCTATTTCACTTCTGAAATGTTGCTCCCAGCTCTTATCACTTCTCTCTTCACTCTCGCTGCAGTCTTCTTCCAACTCTCAAAGACCCAACCAATTCTTCTTGGATTCTCTGTTGTTGCCCAGATCCTCTCTTTGATTCTGGTCTCTCAACGTCTTCCATCCTTCACCGCTCATACACCAACTATCTGTAAGTTTTCCAGAAGTTTTTTTAACTAATTCTCAATTATATTTCAGTGAAATATGCTGGATTCAATATGACCTGGACCGCGATTCTCTTCGTTGTCTCTCTYGTTTTGGAAAGAATGGCAACATCTCAAGTCGATATTCCACCTCCACATTCAGTTTCAACATTCTCGGGACTTGTTAACAAGATTCTTCCGATTCCGAAAAACTCGAAACACGAGGATTCAAGTCTTCAATATGCCGCATTTGCTCATGCTCTCAATCACGTCATTTTCGCTTTATCCACTGTTCTCTACTTTGTCGTTATCTTGTTCTCGTTTGTTTTCTGATTTAGGTCCTATCTTTTTTCTTCTTGTACAGTAGTTGTCAGTATCCACTGCTCAGTTTTGTCTAATAATTTCGCCATATCAGAGTTGTGTGTCTAATAAATAATTGAAGTAAAAAGAATGTTTCGAAAGATTGCCGATAATTACCCTGGGACTGATTGAAACGGGTATATCTTTAGACATAAGTATCTTGGAAGCACGAAAATTGGTAGAAATATAATTTTACATCTGATTCGGAGCTTCTGAAATTTTCAAAGCGATTCCTCAAATCTATTCATTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATATGCTGGATTCAATATGAC</pcr_primer_p1>
		<pcr_primer_p2>GACAAAGTAGAGAACAGTGGATAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATATGCTGGATTCAATATGACCTGGACCGCGATTCTCTTCGTTGTCTCTCTTGTTTTGGAAAGAATGGCAACATCTCAAGTCGATATTCCACCTCCACATTCAGTTTCAACATTCTCGGGACTTGTTAACAAGATTCTTCCGATTCCGAAAAACTCGAAACACGAGGATTCAAGTCTTCAATATGCCGCATTTGCTCATGCTCTCAATCACGTCATTTTCGCTTTATCCACTGTTCTCTACTTTGTC</canonical_amplicon>
		<polymorphic_amplicon>AAATATGCTGGATTCAATATGACCTGGACCGCGATTCTCTTCGTTGTCTCTCTYGTTTTGGAAAGAATGGCAACATCTCAAGTCGATATTCCACCTCCACATTCAGTTTCAACATTCTCGGGACTTGTTAACAAGATTCTTCCGATTCCGAAAAACTCGAAACACGAGGATTCAAGTCTTCAATATGCCGCATTTGCTCATGCTCTCAATCACGTCATTTTCGCTTTATCCACTGTTCTCTACTTTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13661</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>322940</contig_pos>
        <strand>+</strand>
        <context>ATTTGCTCAT[A/G]CTCTCAATCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAACTCGAAACACGAGGATTCAAGTCTTCAATATGCCGCATTTGCTCAT</left_flank>
        <right_flank>CTCTCAATCACGTCATTTTCGCTTTATCCACTGTTCTCTACTTTGTCGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAATCCATTTGATGTTCAAGCCGACAATGGAGAAATCTGTATTTCGTTGAGAAGAAACGCCGTCTATTTCACTTCTGAAATGTTGCTCCCAGCTCTTATCACTTCTCTCTTCACTCTCGCTGCAGTCTTCTTCCAACTCTCAAAGACCCAACCAATTCTTCTTGGATTCTCTGTTGTTGCCCAGATCCTCTCTTTGATTCTGGTCTCTCAACGTCTTCCATCCTTCACCGCTCATACACCAACTATCTGTAAGTTTTCCAGAAGTTTTTTTAACTAATTCTCAATTATATTTCAGTGAAATATGCTGGATTCAATATGACCTGGACCGCGATTCTCTTCGTTGTCTCTCTTGTTTTGGAAAGAATGGCAACATCTCAAGTCGATATTCCACCTCCACATTCAGTTTCAACATTCTCGGGACTTGTTAACAAGATTCTTCCGATTCCGAAAAACTCGAAACACGAGGATTCAAGTCTTCAATATGCCGCATTTGCTCATGCTCTCAATCACGTCATTTTCGCTTTATCCACTGTTCTCTACTTTGTCGTTATCTTGTTCTCGTTTGTTTTCTGATTTAGGTCCTATCTTTTTTCTTCTTGTACAGTAGTTGTCAGTATCCACTGCTCAGTTTTGTCTAATAATTTCGCCATATCAGAGTTGTGTGTCTAATAAATAATTGAAGTAAAAAGAATGTTTCGAAAGATTGCCGATAATTACCCTGGGACTGATTGAAACGGGTATATCTTTAGACATAAGTATCTTGGAAGCACGAAAATTGGTAGAAATATAATTTTACATCTGATTCGGAGCTTCTGAAATTTTCAAAGCGATTCCTCAAATCTATTCATTGTTATAGTTCACCAAAAATGAACGGCGTAATGTTTCTTGTGATTTTCATGAGATGAAGCAACTTTGACAAGCGATAACTCAGCTCAAAGTTGATCAAATAATCTGGAACTTGGCCAGTTTACTGCGGAATTATTGGAATTTTTGCATTCC</canonical>
            <polymorphic>GTAATCCATTTGATGTTCAAGCCGACAATGGAGAAATCTGTATTTCGTTGAGAAGAAACGCCGTCTATTTCACTTCTGAAATGTTGCTCCCAGCTCTTATCACTTCTCTCTTCACTCTCGCTGCAGTCTTCTTCCAACTCTCAAAGACCCAACCAATTCTTCTTGGATTCTCTGTTGTTGCCCAGATCCTCTCTTTGATTCTGGTCTCTCAACGTCTTCCATCCTTCACCGCTCATACACCAACTATCTGTAAGTTTTCCAGAAGTTTTTTTAACTAATTCTCAATTATATTTCAGTGAAATATGCTGGATTCAATATGACCTGGACCGCGATTCTCTTCGTTGTCTCTCTTGTTTTGGAAAGAATGGCAACATCTCAAGTCGATATTCCACCTCCACATTCAGTTTCAACATTCTCGGGACTTGTTAACAAGATTCTTCCGATTCCGAAAAACTCGAAACACGAGGATTCAAGTCTTCAATATGCCGCATTTGCTCATRCTCTCAATCACGTCATTTTCGCTTTATCCACTGTTCTCTACTTTGTCGTTATCTTGTTCTCGTTTGTTTTCTGATTTAGGTCCTATCTTTTTTCTTCTTGTACAGTAGTTGTCAGTATCCACTGCTCAGTTTTGTCTAATAATTTCGCCATATCAGAGTTGTGTGTCTAATAAATAATTGAAGTAAAAAGAATGTTTCGAAAGATTGCCGATAATTACCCTGGGACTGATTGAAACGGGTATATCTTTAGACATAAGTATCTTGGAAGCACGAAAATTGGTAGAAATATAATTTTACATCTGATTCGGAGCTTCTGAAATTTTCAAAGCGATTCCTCAAATCTATTCATTGTTATAGTTCACCAAAAATGAACGGCGTAATGTTTCTTGTGATTTTCATGAGATGAAGCAACTTTGACAAGCGATAACTCAGCTCAAAGTTGATCAAATAATCTGGAACTTGGCCAGTTTACTGCGGAATTATTGGAATTTTTGCATTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>497 400 103</canonical_bands>
                <polymorphic_bands>897 103</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTAACAAGATTCTTCCGATTC</pcr_primer_p1>
		<pcr_primer_p2>TTAGACACACAACTCTGATATGG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTAACAAGATTCTTCCGATTCCGAAAAACTCGAAACACGAGGATTCAAGTCTTCAATATGCCGCATTTGCTCATGCTCTCAATCACGTCATTTTCGCTTTATCCACTGTTCTCTACTTTGTCGTTATCTTGTTCTCGTTTGTTTTCTGATTTAGGTCCTATCTTTTTTCTTCTTGTACAGTAGTTGTCAGTATCCACTGCTCAGTTTTGTCTAATAATTTCGCCATATCAGAGTTGTGTGTCTAA</canonical_amplicon>
		<polymorphic_amplicon>GTTAACAAGATTCTTCCGATTCCGAAAAACTCGAAACACGAGGATTCAAGTCTTCAATATGCCGCATTTGCTCATRCTCTCAATCACGTCATTTTCGCTTTATCCACTGTTCTCTACTTTGTCGTTATCTTGTTCTCGTTTGTTTTCTGATTTAGGTCCTATCTTTTTTCTTCTTGTACAGTAGTTGTCAGTATCCACTGCTCAGTTTTGTCTAATAATTTCGCCATATCAGAGTTGTGTGTCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13662</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>323025</contig_pos>
        <strand>+</strand>
        <context>TTTAGGTCCT[A/T]TCTTTTTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTCTACTTTGTCGTTATCTTGTTCTCGTTTGTTTTCTGATTTAGGTCCT</left_flank>
        <right_flank>TCTTTTTTCTTCTTGTACAGTAGTTGTCAGTATCCACTGCTCAGTTTTGT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCCCAGCTCTTATCACTTCTCTCTTCACTCTCGCTGCAGTCTTCTTCCAACTCTCAAAGACCCAACCAATTCTTCTTGGATTCTCTGTTGTTGCCCAGATCCTCTCTTTGATTCTGGTCTCTCAACGTCTTCCATCCTTCACCGCTCATACACCAACTATCTGTAAGTTTTCCAGAAGTTTTTTTAACTAATTCTCAATTATATTTCAGTGAAATATGCTGGATTCAATATGACCTGGACCGCGATTCTCTTCGTTGTCTCTCTTGTTTTGGAAAGAATGGCAACATCTCAAGTCGATATTCCACCTCCACATTCAGTTTCAACATTCTCGGGACTTGTTAACAAGATTCTTCCGATTCCGAAAAACTCGAAACACGAGGATTCAAGTCTTCAATATGCCGCATTTGCTCATGCTCTCAATCACGTCATTTTCGCTTTATCCACTGTTCTCTACTTTGTCGTTATCTTGTTCTCGTTTGTTTTCTGATTTAGGTCCTATCTTTTTTCTTCTTGTACAGTAGTTGTCAGTATCCACTGCTCAGTTTTGTCTAATAATTTCGCCATATCAGAGTTGTGTGTCTAATAAATAATTGAAGTAAAAAGAATGTTTCGAAAGATTGCCGATAATTACCCTGGGACTGATTGAAACGGGTATATCTTTAGACATAAGTATCTTGGAAGCACGAAAATTGGTAGAAATATAATTTTACATCTGATTCGGAGCTTCTGAAATTTTCAAAGCGATTCCTCAAATCTATTCATTGTTATAGTTCACCAAAAATGAACGGCGTAATGTTTCTTGTGATTTTCATGAGATGAAGCAACTTTGACAAGCGATAACTCAGCTCAAAGTTGATCAAATAATCTGGAACTTGGCCAGTTTACTGCGGAATTATTGGAATTTTTGCATTCCAAAATTGAGCGCTGTACAACGCTTTAGTCAACTTTTATGCTGGTACAAACAAAATTGTCCTCAAAATTCAAAAAACTTTTGTTAA</canonical>
            <polymorphic>GCTCCCAGCTCTTATCACTTCTCTCTTCACTCTCGCTGCAGTCTTCTTCCAACTCTCAAAGACCCAACCAATTCTTCTTGGATTCTCTGTTGTTGCCCAGATCCTCTCTTTGATTCTGGTCTCTCAACGTCTTCCATCCTTCACCGCTCATACACCAACTATCTGTAAGTTTTCCAGAAGTTTTTTTAACTAATTCTCAATTATATTTCAGTGAAATATGCTGGATTCAATATGACCTGGACCGCGATTCTCTTCGTTGTCTCTCTTGTTTTGGAAAGAATGGCAACATCTCAAGTCGATATTCCACCTCCACATTCAGTTTCAACATTCTCGGGACTTGTTAACAAGATTCTTCCGATTCCGAAAAACTCGAAACACGAGGATTCAAGTCTTCAATATGCCGCATTTGCTCATGCTCTCAATCACGTCATTTTCGCTTTATCCACTGTTCTCTACTTTGTCGTTATCTTGTTCTCGTTTGTTTTCTGATTTAGGTCCTWTCTTTTTTCTTCTTGTACAGTAGTTGTCAGTATCCACTGCTCAGTTTTGTCTAATAATTTCGCCATATCAGAGTTGTGTGTCTAATAAATAATTGAAGTAAAAAGAATGTTTCGAAAGATTGCCGATAATTACCCTGGGACTGATTGAAACGGGTATATCTTTAGACATAAGTATCTTGGAAGCACGAAAATTGGTAGAAATATAATTTTACATCTGATTCGGAGCTTCTGAAATTTTCAAAGCGATTCCTCAAATCTATTCATTGTTATAGTTCACCAAAAATGAACGGCGTAATGTTTCTTGTGATTTTCATGAGATGAAGCAACTTTGACAAGCGATAACTCAGCTCAAAGTTGATCAAATAATCTGGAACTTGGCCAGTTTACTGCGGAATTATTGGAATTTTTGCATTCCAAAATTGAGCGCTGTACAACGCTTTAGTCAACTTTTATGCTGGTACAAACAAAATTGTCCTCAAAATTCAAAAAACTTTTGTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTAACAAGATTCTTCCGATTC</pcr_primer_p1>
		<pcr_primer_p2>TTAGACACACAACTCTGATATGG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTAACAAGATTCTTCCGATTCCGAAAAACTCGAAACACGAGGATTCAAGTCTTCAATATGCCGCATTTGCTCATGCTCTCAATCACGTCATTTTCGCTTTATCCACTGTTCTCTACTTTGTCGTTATCTTGTTCTCGTTTGTTTTCTGATTTAGGTCCTATCTTTTTTCTTCTTGTACAGTAGTTGTCAGTATCCACTGCTCAGTTTTGTCTAATAATTTCGCCATATCAGAGTTGTGTGTCTAA</canonical_amplicon>
		<polymorphic_amplicon>GTTAACAAGATTCTTCCGATTCCGAAAAACTCGAAACACGAGGATTCAAGTCTTCAATATGCCGCATTTGCTCATGCTCTCAATCACGTCATTTTCGCTTTATCCACTGTTCTCTACTTTGTCGTTATCTTGTTCTCGTTTGTTTTCTGATTTAGGTCCTWTCTTTTTTCTTCTTGTACAGTAGTTGTCAGTATCCACTGCTCAGTTTTGTCTAATAATTTCGCCATATCAGAGTTGTGTGTCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13663</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>326671</contig_pos>
        <strand>+</strand>
        <context>CGAACGCAAA[A/G]TATAATTTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGAGCAACTGGCAAAGTTTTTTTCAAATTTTCCTCGTTTCGAACGCAAA</left_flank>
        <right_flank>TATAATTTCCAGAATTGAATCAAAACTATATCTTCCACCTCCATTATCTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTGTGTTGGCAGTAATTCATGTCAGTATCTCAAGTATGTTTCCTTCAATTTTCACTGATTATATTCATATCTGTTTGCAGGAACATTCGTGTCTTCAACCAACACAATATTTTACACAGTAACTTCACAAGGAAAATTCGAAATTTTCGGTGAAGTTCAAGATGATGATCGTGTGGGGAATATCTTAGATTGTGGTCACTTCAATAGAACAGTTTTGGATTTTTTCAACATGGACTATATCGAAGCGAGTTGTTTGTTTCGAAGCTCTGTAATGCCATTTTTGGTTTTCATCTATATTTTTGTTACTGGTGTTTTGCTGGTCAATTTGCTGACTGCTCAGTTAACGTGAGAAATTAGAAGTTTCAATTTGCGAGACTTAGTAAATTTTCAGGAAAGAATACGAGAAGGAATCTGAAAAAAGTCGATACTACAAAGGATATCTGAAATACGAGCAACTGGCAAAGTTTTTTTCAAATTTTCCTCGTTTCGAACGCAAAGTATAATTTCCAGAATTGAATCAAAACTATATCTTCCACCTCCATTATCTCTGATATACATTTGCATTCGGTTGATTTTTTATTTCTTCGCTGGAATTTGTTTTTTGATCAATCTAGTGACTTCATGTTGTGGCTGGTCATTCTTATTCCCCAAATGTTCAAGATTTTTTTACATGACCATAATAAGTAAACTGGAAGGATATCCATGGGGAGCAGTTCGAGATTCGACAGATGATCATGGAACCGAAAAAGCTATTCAAGATTATTTGAAAAAGTCACCGGACGATATTTGGGAGAAGTTGAAGGAGGTAGTCAACATGTACGATAGAAAAATATTGGATGTTGAAAATTTGATAAACCTGAGAAAAGATATTGATAGTTTTCTGGATAAACAAGTGGACGAAGAGAGGGCAAGAAGTCATTCAGCCATAGGAACGGCCATAGGTTTCGTATCAACCACACAATCAAGACAGATAAATCGAAACTCGACGATAAAATTCC</canonical>
            <polymorphic>GTTTGTGTTGGCAGTAATTCATGTCAGTATCTCAAGTATGTTTCCTTCAATTTTCACTGATTATATTCATATCTGTTTGCAGGAACATTCGTGTCTTCAACCAACACAATATTTTACACAGTAACTTCACAAGGAAAATTCGAAATTTTCGGTGAAGTTCAAGATGATGATCGTGTGGGGAATATCTTAGATTGTGGTCACTTCAATAGAACAGTTTTGGATTTTTTCAACATGGACTATATCGAAGCGAGTTGTTTGTTTCGAAGCTCTGTAATGCCATTTTTGGTTTTCATCTATATTTTTGTTACTGGTGTTTTGCTGGTCAATTTGCTGACTGCTCAGTTAACGTGAGAAATTAGAAGTTTCAATTTGCGAGACTTAGTAAATTTTCAGGAAAGAATACGAGAAGGAATCTGAAAAAAGTCGATACTACAAAGGATATCTGAAATACGAGCAACTGGCAAAGTTTTTTTCAAATTTTCCTCGTTTCGAACGCAAARTATAATTTCCAGAATTGAATCAAAACTATATCTTCCACCTCCATTATCTCTGATATACATTTGCATTCGGTTGATTTTTTATTTCTTCGCTGGAATTTGTTTTTTGATCAATCTAGTGACTTCATGTTGTGGCTGGTCATTCTTATTCCCCAAATGTTCAAGATTTTTTTACATGACCATAATAAGTAAACTGGAAGGATATCCATGGGGAGCAGTTCGAGATTCGACAGATGATCATGGAACCGAAAAAGCTATTCAAGATTATTTGAAAAAGTCACCGGACGATATTTGGGAGAAGTTGAAGGAGGTAGTCAACATGTACGATAGAAAAATATTGGATGTTGAAAATTTGATAAACCTGAGAAAAGATATTGATAGTTTTCTGGATAAACAAGTGGACGAAGAGAGGGCAAGAAGTCATTCAGCCATAGGAACGGCCATAGGTTTCGTATCAACCACACAATCAAGACAGATAAATCGAAACTCGACGATAAAATTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATTTTCAGGAAAGAATACGA</pcr_primer_p1>
		<pcr_primer_p2>CACAACATGAAGTCACTAGATTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAAATTTTCAGGAAAGAATACGAGAAGGAATCTGAAAAAAGTCGATACTACAAAGGATATCTGAAATACGAGCAACTGGCAAAGTTTTTTTCAAATTTTCCTCGTTTCGAACGCAAAGTATAATTTCCAGAATTGAATCAAAACTATATCTTCCACCTCCATTATCTCTGATATACATTTGCATTCGGTTGATTTTTTATTTCTTCGCTGGAATTTGTTTTTTGATCAATCTAGTGACTTCATGTTGTG</canonical_amplicon>
		<polymorphic_amplicon>TAAATTTTCAGGAAAGAATACGAGAAGGAATCTGAAAAAAGTCGATACTACAAAGGATATCTGAAATACGAGCAACTGGCAAAGTTTTTTTCAAATTTTCCTCGTTTCGAACGCAAARTATAATTTCCAGAATTGAATCAAAACTATATCTTCCACCTCCATTATCTCTGATATACATTTGCATTCGGTTGATTTTTTATTTCTTCGCTGGAATTTGTTTTTTGATCAATCTAGTGACTTCATGTTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13664</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>326656</contig_pos>
        <strand>+</strand>
        <context>AAATTYTCCT[C/T]GTTTCGAACG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGGATATCTGAAATACGAGCAACTGGCAAAGTTTTTTTCAAATTTTCCT</left_flank>
        <right_flank>GTTTCGAACGCAAAGTATAATTTCCAGAATTGAATCAAAACTATATCTTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTGCACATTCTGGTTTGTGTTGGCAGTAATTCATGTCAGTATCTCAAGTATGTTTCCTTCAATTTTCACTGATTATATTCATATCTGTTTGCAGGAACATTCGTGTCTTCAACCAACACAATATTTTACACAGTAACTTCACAAGGAAAATTCGAAATTTTCGGTGAAGTTCAAGATGATGATCGTGTGGGGAATATCTTAGATTGTGGTCACTTCAATAGAACAGTTTTGGATTTTTTCAACATGGACTATATCGAAGCGAGTTGTTTGTTTCGAAGCTCTGTAATGCCATTTTTGGTTTTCATCTATATTTTTGTTACTGGTGTTTTGCTGGTCAATTTGCTGACTGCTCAGTTAACGTGAGAAATTAGAAGTTTCAATTTGCGAGACTTAGTAAATTTTCAGGAAAGAATACGAGAAGGAATCTGAAAAAAGTCGATACTACAAAGGATATCTGAAATACGAGCAACTGGCAAAGTTTTTTTCAAATTTTCCTCGTTTCGAACGCAAAGTATAATTTCCAGAATTGAATCAAAACTATATCTTCCACCTCCATTATCTCTGATATACATTTGCATTCGGTTGATTTTTTATTTCTTCGCTGGAATTTGTTTTTTGATCAATCTAGTGACTTCATGTTGTGGCTGGTCATTCTTATTCCCCAAATGTTCAAGATTTTTTTACATGACCATAATAAGTAAACTGGAAGGATATCCATGGGGAGCAGTTCGAGATTCGACAGATGATCATGGAACCGAAAAAGCTATTCAAGATTATTTGAAAAAGTCACCGGACGATATTTGGGAGAAGTTGAAGGAGGTAGTCAACATGTACGATAGAAAAATATTGGATGTTGAAAATTTGATAAACCTGAGAAAAGATATTGATAGTTTTCTGGATAAACAAGTGGACGAAGAGAGGGCAAGAAGTCATTCAGCCATAGGAACGGCCATAGGTTTCGTATCAACCACACAATCAAGACAGATAAATCGAAACT</canonical>
            <polymorphic>ATTCTGCACATTCTGGTTTGTGTTGGCAGTAATTCATGTCAGTATCTCAAGTATGTTTCCTTCAATTTTCACTGATTATATTCATATCTGTTTGCAGGAACATTCGTGTCTTCAACCAACACAATATTTTACACAGTAACTTCACAAGGAAAATTCGAAATTTTCGGTGAAGTTCAAGATGATGATCGTGTGGGGAATATCTTAGATTGTGGTCACTTCAATAGAACAGTTTTGGATTTTTTCAACATGGACTATATCGAAGCGAGTTGTTTGTTTCGAAGCTCTGTAATGCCATTTTTGGTTTTCATCTATATTTTTGTTACTGGTGTTTTGCTGGTCAATTTGCTGACTGCTCAGTTAACGTGAGAAATTAGAAGTTTCAATTTGCGAGACTTAGTAAATTTTCAGGAAAGAATACGAGAAGGAATCTGAAAAAAGTCGATACTACAAAGGATATCTGAAATACGAGCAACTGGCAAAGTTTTTTTCAAATTTTCCTYGTTTCGAACGCAAAGTATAATTTCCAGAATTGAATCAAAACTATATCTTCCACCTCCATTATCTCTGATATACATTTGCATTCGGTTGATTTTTTATTTCTTCGCTGGAATTTGTTTTTTGATCAATCTAGTGACTTCATGTTGTGGCTGGTCATTCTTATTCCCCAAATGTTCAAGATTTTTTTACATGACCATAATAAGTAAACTGGAAGGATATCCATGGGGAGCAGTTCGAGATTCGACAGATGATCATGGAACCGAAAAAGCTATTCAAGATTATTTGAAAAAGTCACCGGACGATATTTGGGAGAAGTTGAAGGAGGTAGTCAACATGTACGATAGAAAAATATTGGATGTTGAAAATTTGATAAACCTGAGAAAAGATATTGATAGTTTTCTGGATAAACAAGTGGACGAAGAGAGGGCAAGAAGTCATTCAGCCATAGGAACGGCCATAGGTTTCGTATCAACCACACAATCAAGACAGATAAATCGAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATTTTCAGGAAAGAATACGA</pcr_primer_p1>
		<pcr_primer_p2>CACAACATGAAGTCACTAGATTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAAATTTTCAGGAAAGAATACGAGAAGGAATCTGAAAAAAGTCGATACTACAAAGGATATCTGAAATACGAGCAACTGGCAAAGTTTTTTTCAAATTTTCCTCGTTTCGAACGCAAAGTATAATTTCCAGAATTGAATCAAAACTATATCTTCCACCTCCATTATCTCTGATATACATTTGCATTCGGTTGATTTTTTATTTCTTCGCTGGAATTTGTTTTTTGATCAATCTAGTGACTTCATGTTGTG</canonical_amplicon>
		<polymorphic_amplicon>TAAATTTTCAGGAAAGAATACGAGAAGGAATCTGAAAAAAGTCGATACTACAAAGGATATCTGAAATACGAGCAACTGGCAAAGTTTTTTTCAAATTTTCCTYGTTTCGAACGCAAAGTATAATTTCCAGAATTGAATCAAAACTATATCTTCCACCTCCATTATCTCTGATATACATTTGCATTCGGTTGATTTTTTATTTCTTCGCTGGAATTTGTTTTTTGATCAATCTAGTGACTTCATGTTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13665</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>326651</contig_pos>
        <strand>+</strand>
        <context>KTTTCAAATT[C/T]TCCTYGTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTACAAAGGATATCTGAAATACGAGCAACTGGCAAAGTTTTTTTCAAATT</left_flank>
        <right_flank>TCCTCGTTTCGAACGCAAAGTATAATTTCCAGAATTGAATCAAAACTATA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAATATTCTGCACATTCTGGTTTGTGTTGGCAGTAATTCATGTCAGTATCTCAAGTATGTTTCCTTCAATTTTCACTGATTATATTCATATCTGTTTGCAGGAACATTCGTGTCTTCAACCAACACAATATTTTACACAGTAACTTCACAAGGAAAATTCGAAATTTTCGGTGAAGTTCAAGATGATGATCGTGTGGGGAATATCTTAGATTGTGGTCACTTCAATAGAACAGTTTTGGATTTTTTCAACATGGACTATATCGAAGCGAGTTGTTTGTTTCGAAGCTCTGTAATGCCATTTTTGGTTTTCATCTATATTTTTGTTACTGGTGTTTTGCTGGTCAATTTGCTGACTGCTCAGTTAACGTGAGAAATTAGAAGTTTCAATTTGCGAGACTTAGTAAATTTTCAGGAAAGAATACGAGAAGGAATCTGAAAAAAGTCGATACTACAAAGGATATCTGAAATACGAGCAACTGGCAAAGTTTTTTTCAAATTTTCCTCGTTTCGAACGCAAAGTATAATTTCCAGAATTGAATCAAAACTATATCTTCCACCTCCATTATCTCTGATATACATTTGCATTCGGTTGATTTTTTATTTCTTCGCTGGAATTTGTTTTTTGATCAATCTAGTGACTTCATGTTGTGGCTGGTCATTCTTATTCCCCAAATGTTCAAGATTTTTTTACATGACCATAATAAGTAAACTGGAAGGATATCCATGGGGAGCAGTTCGAGATTCGACAGATGATCATGGAACCGAAAAAGCTATTCAAGATTATTTGAAAAAGTCACCGGACGATATTTGGGAGAAGTTGAAGGAGGTAGTCAACATGTACGATAGAAAAATATTGGATGTTGAAAATTTGATAAACCTGAGAAAAGATATTGATAGTTTTCTGGATAAACAAGTGGACGAAGAGAGGGCAAGAAGTCATTCAGCCATAGGAACGGCCATAGGTTTCGTATCAACCACACAATCAAGACAGATAAATCG</canonical>
            <polymorphic>TTAATATTCTGCACATTCTGGTTTGTGTTGGCAGTAATTCATGTCAGTATCTCAAGTATGTTTCCTTCAATTTTCACTGATTATATTCATATCTGTTTGCAGGAACATTCGTGTCTTCAACCAACACAATATTTTACACAGTAACTTCACAAGGAAAATTCGAAATTTTCGGTGAAGTTCAAGATGATGATCGTGTGGGGAATATCTTAGATTGTGGTCACTTCAATAGAACAGTTTTGGATTTTTTCAACATGGACTATATCGAAGCGAGTTGTTTGTTTCGAAGCTCTGTAATGCCATTTTTGGTTTTCATCTATATTTTTGTTACTGGTGTTTTGCTGGTCAATTTGCTGACTGCTCAGTTAACGTGAGAAATTAGAAGTTTCAATTTGCGAGACTTAGTAAATTTTCAGGAAAGAATACGAGAAGGAATCTGAAAAAAGTCGATACTACAAAGGATATCTGAAATACGAGCAACTGGCAAAGTTTTTTTCAAATTYTCCTCGTTTCGAACGCAAAGTATAATTTCCAGAATTGAATCAAAACTATATCTTCCACCTCCATTATCTCTGATATACATTTGCATTCGGTTGATTTTTTATTTCTTCGCTGGAATTTGTTTTTTGATCAATCTAGTGACTTCATGTTGTGGCTGGTCATTCTTATTCCCCAAATGTTCAAGATTTTTTTACATGACCATAATAAGTAAACTGGAAGGATATCCATGGGGAGCAGTTCGAGATTCGACAGATGATCATGGAACCGAAAAAGCTATTCAAGATTATTTGAAAAAGTCACCGGACGATATTTGGGAGAAGTTGAAGGAGGTAGTCAACATGTACGATAGAAAAATATTGGATGTTGAAAATTTGATAAACCTGAGAAAAGATATTGATAGTTTTCTGGATAAACAAGTGGACGAAGAGAGGGCAAGAAGTCATTCAGCCATAGGAACGGCCATAGGTTTCGTATCAACCACACAATCAAGACAGATAAATCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>253 241 156 134 118 91 7</canonical_bands>
                <polymorphic_bands>253 241 209 156 134 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAATTTTCAGGAAAGAATACGA</pcr_primer_p1>
		<pcr_primer_p2>CACAACATGAAGTCACTAGATTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAAATTTTCAGGAAAGAATACGAGAAGGAATCTGAAAAAAGTCGATACTACAAAGGATATCTGAAATACGAGCAACTGGCAAAGTTTTTTTCAAATTTTCCTCGTTTCGAACGCAAAGTATAATTTCCAGAATTGAATCAAAACTATATCTTCCACCTCCATTATCTCTGATATACATTTGCATTCGGTTGATTTTTTATTTCTTCGCTGGAATTTGTTTTTTGATCAATCTAGTGACTTCATGTTGTG</canonical_amplicon>
		<polymorphic_amplicon>TAAATTTTCAGGAAAGAATACGAGAAGGAATCTGAAAAAAGTCGATACTACAAAGGATATCTGAAATACGAGCAACTGGCAAAGTTTTTTTCAAATTYTCCTCGTTTCGAACGCAAAGTATAATTTCCAGAATTGAATCAAAACTATATCTTCCACCTCCATTATCTCTGATATACATTTGCATTCGGTTGATTTTTTATTTCTTCGCTGGAATTTGTTTTTTGATCAATCTAGTGACTTCATGTTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13668</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>328557</contig_pos>
        <strand></strand>
        <context>ATGTTACAGT[A/G]AGCTGCAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGAGTAATTGAGGAAATCATTAAAATATTTTTTTAAAGCATGTTACAGT</left_flank>
        <right_flank>AGCTGCAAGAACAAGCATGTAACATGATAAACCACTTATACTGCCTCGAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATACTAAAATTAGAGAGCTTCTTCTTTGCGGTATTCACATCAATATCGGTATTTTTCAATTTCTTGGAAAAAAAATAAGCTGTTTTATTCAGAAGACCTGTTCAAAAAGGATATCAACTCATTCCGGATGGTTTTGGCTGCTTTTTTCGGTGAAAGAAACGCACTCGTACTTACGCCGAAAGCAGAAACACCTGAAACAGTAGCACCTGAAGCAGAATCACCTGAAACAGAAGCACCAGTCAAAACGAAAACGTATACGTGATTCGGTTAATAGGAGAGTGTCTGACCTAAAATCTTTTCAGGTTACAGAAAACGGACTTGCTACCCAACTGTCAACATCATCTACATACAATTATGGTGATGTGTTATGCGGCCGATGTGATGCAAAAAGAAATACAGAAACTGGATAATAGAATTGTCATGAAAAAAGACAAATATTTCAAATTGAAAGAGTAATTGAGGAAATCATTAAAATATTTTTTTAAAGCATGTTACAGTAAGCTGCAAGAACAAGCATGTAACATGATAAACCACTTATACTGCCTCGAAACTAATGGACCTGAGAACGCGATAGCTGCTTTGCAGGAAGATTGTCATTTATCCTGGACGAATAAAAACATAAACAGTAGATATCGGGACTACCTAAATGGAAAGTTCAATAGAAACCAAGAGATAATGGCCATCGCTTATAAAGCAGATGCAATGGTACTGGACTCATTCTGCAAATTCGTATATTCACATTTCAGAAGTTCCTATCTCAAAAGCCGTGTCTCTTACTCATTGATGAACGTTATAACATCAGAAAAACAATGGAAACCAACGTAACAGCAAACCATGAAAAACAAGGCACTCTTCTGAATATGAACGGAAAATTATGGGTACATGGGGTATGACATAAAGTTGAATTTCTTTGAAACGAACATATTCCAGTTATCTCGTTTGGTGTATATTTTGGCGTTCGCCTACACATTGTGTCGTTTTCCGATATATGGAGATACT</canonical>
            <polymorphic>TATACTAAAATTAGAGAGCTTCTTCTTTGCGGTATTCACATCAATATCGGTATTTTTCAATTTCTTGGAAAAAAAATAAGCTGTTTTATTCAGAAGACCTGTTCAAAAAGGATATCAACTCATTCCGGATGGTTTTGGCTGCTTTTTTCGGTGAAAGAAACGCACTCGTACTTACGCCGAAAGCAGAAACACCTGAAACAGTAGCACCTGAAGCAGAATCACCTGAAACAGAAGCACCAGTCAAAACGAAAACGTATACGTGATTCGGTTAATAGGAGAGTGTCTGACCTAAAATCTTTTCAGGTTACAGAAAACGGACTTGCTACCCAACTGTCAACATCATCTACATACAATTATGGTGATGTGTTATGCGGCCGATGTGATGCAAAAAGAAATACAGAAACTGGATAATAGAATTGTCATGAAAAAAGACAAATATTTCAAATTGAAAGAGTAATTGAGGAAATCATTAAAATATTTTTTTAAAGCATGTTACAGTRAGCTGCAAGAACAAGCATGTAACATGATAAACCACTTATACTGCCTCGAAACTAATGGACCTGAGAACGCGATAGCTGCTTTGCAGGAAGATTGTCATTTATCCTGGACGAATAAAAACATAAACAGTAGATATCGGGACTACCTAAATGGAAAGTTCAATAGAAACCAAGAGATAATGGCCATCGCTTATAAAGCAGATGCAATGGTACTGGACTCATTCTGCAAATTCGTATATTCACATTTCAGAAGTTCCTATCTCAAAAGCCGTGTCTCTTACTCATTGATGAACGTTATAACATCAGAAAAACAATGGAAACCAACGTAACAGCAAACCATGAAAAACAAGGCACTCTTCTGAATATGAACGGAAAATTATGGGTACATGGGGTATGACATAAAGTTGAATTTCTTTGAAACGAACATATTCCAGTTATCTCGTTTGGTGTATATTTTGGCGTTCGCCTACACATTGTGTCGTTTTCCGATATATGGAGATACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGCAAAAAGAAATACAGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TATGTTTTTATTCGTCCAGGATA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GATGCAAAAAGAAATACAGAAACTGGATAATAGAATTGTCATGAAAAAAGACAAATATTTCAAATTGAAAGAGTAATTGAGGAAATCATTAAAATATTTTTTTAAAGCATGTTACAGTAAGCTGCAAGAACAAGCATGTAACATGATAAACCACTTATACTGCCTCGAAACTAATGGACCTGAGAACGCGATAGCTGCTTTGCAGGAAGATTGTCATTTATCCTGGACGAATAAAAACATA</canonical_amplicon>
		<polymorphic_amplicon>GATGCAAAAAGAAATACAGAAACTGGATAATAGAATTGTCATGAAAAAAGACAAATATTTCAAATTGAAAGAGTAATTGAGGAAATCATTAAAATATTTTTTTAAAGCATGTTACAGTRAGCTGCAAGAACAAGCATGTAACATGATAAACCACTTATACTGCCTCGAAACTAATGGACCTGAGAACGCGATAGCTGCTTTGCAGGAAGATTGTCATTTATCCTGGACGAATAAAAACATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13669</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>328432</contig_pos>
        <strand></strand>
        <context>TGTTATGCGG[C/T]CGATGTGATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCCAACTGTCAACATCATCTACATACAATTATGGTGATGTGTTATGCGG</left_flank>
        <right_flank>CGATGTGATGCAAAAAGAAATACAGAAACTGGATAATAGAATTGTCATGA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCATTGATGATTATAAATTAGTGGTGAGTGAACAACTTCTTTTGTTTTAATGTATACTAGATTTCAGTATAAAATACCAATTCCTAATCTAAACACCGATCCCTCGAATGACACTCTCAATATCTATACTAAAATTAGAGAGCTTCTTCTTTGCGGTATTCACATCAATATCGGTATTTTTCAATTTCTTGGAAAAAAAATAAGCTGTTTTATTCAGAAGACCTGTTCAAAAAGGATATCAACTCATTCCGGATGGTTTTGGCTGCTTTTTTCGGTGAAAGAAACGCACTCGTACTTACGCCGAAAGCAGAAACACCTGAAACAGTAGCACCTGAAGCAGAATCACCTGAAACAGAAGCACCAGTCAAAACGAAAACGTATACGTGATTCGGTTAATAGGAGAGTGTCTGACCTAAAATCTTTTCAGGTTACAGAAAACGGACTTGCTACCCAACTGTCAACATCATCTACATACAATTATGGTGATGTGTTATGCGGCCGATGTGATGCAAAAAGAAATACAGAAACTGGATAATAGAATTGTCATGAAAAAAGACAAATATTTCAAATTGAAAGAGTAATTGAGGAAATCATTAAAATATTTTTTTAAAGCATGTTACAGTAAGCTGCAAGAACAAGCATGTAACATGATAAACCACTTATACTGCCTCGAAACTAATGGACCTGAGAACGCGATAGCTGCTTTGCAGGAAGATTGTCATTTATCCTGGACGAATAAAAACATAAACAGTAGATATCGGGACTACCTAAATGGAAAGTTCAATAGAAACCAAGAGATAATGGCCATCGCTTATAAAGCAGATGCAATGGTACTGGACTCATTCTGCAAATTCGTATATTCACATTTCAGAAGTTCCTATCTCAAAAGCCGTGTCTCTTACTCATTGATGAACGTTATAACATCAGAAAAACAATGGAAACCAACGTAACAGCAAACCATGAAAAACAAGGCACTCTTCTGAATATGAACGGAAAATT</canonical>
            <polymorphic>ATCATTGATGATTATAAATTAGTGGTGAGTGAACAACTTCTTTTGTTTTAATGTATACTAGATTTCAGTATAAAATACCAATTCCTAATCTAAACACCGATCCCTCGAATGACACTCTCAATATCTATACTAAAATTAGAGAGCTTCTTCTTTGCGGTATTCACATCAATATCGGTATTTTTCAATTTCTTGGAAAAAAAATAAGCTGTTTTATTCAGAAGACCTGTTCAAAAAGGATATCAACTCATTCCGGATGGTTTTGGCTGCTTTTTTCGGTGAAAGAAACGCACTCGTACTTACGCCGAAAGCAGAAACACCTGAAACAGTAGCACCTGAAGCAGAATCACCTGAAACAGAAGCACCAGTCAAAACGAAAACGTATACGTGATTCGGTTAATAGGAGAGTGTCTGACCTAAAATCTTTTCAGGTTACAGAAAACGGACTTGCTACCCAACTGTCAACATCATCTACATACAATTATGGTGATGTGTTATGCGGYCGATGTGATGCAAAAAGAAATACAGAAACTGGATAATAGAATTGTCATGAAAAAAGACAAATATTTCAAATTGAAAGAGTAATTGAGGAAATCATTAAAATATTTTTTTAAAGCATGTTACAGTAAGCTGCAAGAACAAGCATGTAACATGATAAACCACTTATACTGCCTCGAAACTAATGGACCTGAGAACGCGATAGCTGCTTTGCAGGAAGATTGTCATTTATCCTGGACGAATAAAAACATAAACAGTAGATATCGGGACTACCTAAATGGAAAGTTCAATAGAAACCAAGAGATAATGGCCATCGCTTATAAAGCAGATGCAATGGTACTGGACTCATTCTGCAAATTCGTATATTCACATTTCAGAAGTTCCTATCTCAAAAGCCGTGTCTCTTACTCATTGATGAACGTTATAACATCAGAAAAACAATGGAAACCAACGTAACAGCAAACCATGAAAAACAAGGCACTCTTCTGAATATGAACGGAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CGGCCG</site>
                <isoschizomers>
                    <enzyme>BseX3I</enzyme>
                    <enzyme>BstZI</enzyme>
                    <enzyme>EagI</enzyme>
                    <enzyme>EclXI</enzyme>
                    <enzyme>Eco52I</enzyme>
                    <enzyme>XmaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>499 306 195</canonical_bands>
                <polymorphic_bands>805 195</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>297 266 233 131 73</canonical_bands>
                <polymorphic_bands>364 297 266 73</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>497 306 197</canonical_bands>
                <polymorphic_bands>803 197</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>236 143 128 110 105 85 73 62 58</canonical_bands>
                <polymorphic_bands>364 143 110 105 85 73 62 58</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACAGAAAACGGACTTGCTAC</pcr_primer_p1>
		<pcr_primer_p2>TTAGTTTCGAGGCAGTATAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACAGAAAACGGACTTGCTACCCAACTGTCAACATCATCTACATACAATTATGGTGATGTGTTATGCGGCCGATGTGATGCAAAAAGAAATACAGAAACTGGATAATAGAATTGTCATGAAAAAAGACAAATATTTCAAATTGAAAGAGTAATTGAGGAAATCATTAAAATATTTTTTTAAAGCATGTTACAGTAAGCTGCAAGAACAAGCATGTAACATGATAAACCACTTATACTGCCTCGAAACTAA</canonical_amplicon>
		<polymorphic_amplicon>TACAGAAAACGGACTTGCTACCCAACTGTCAACATCATCTACATACAATTATGGTGATGTGTTATGCGGYCGATGTGATGCAAAAAGAAATACAGAAACTGGATAATAGAATTGTCATGAAAAAAGACAAATATTTCAAATTGAAAGAGTAATTGAGGAAATCATTAAAATATTTTTTTAAAGCATGTTACAGTAAGCTGCAAGAACAAGCATGTAACATGATAAACCACTTATACTGCCTCGAAACTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13670</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>346496</contig_pos>
        <strand>+</strand>
        <context>TCTTCTATTT[A/G/T]AAAAAAAGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G/T</alleles>
        <left_flank>CCGGAGTCCCAAAGTATGTCTTTTTTCTGATTTCTGGACATCTTCTATTT</left_flank>
        <right_flank>AAAAAAAGTGTACATGTAATTAAATTGATTCCTGTAATTAAATTGAATCG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAACCCTCTTTTTTTCAATTTTTGAAAATGAATCCGAAAACTACAGTAAAAATTTTCTTCAGATTTCATAATTTTGTAAATCATTGGAATGTATAATCTTTGTTCGGATGTCCAATTTAAATCTTTCCCAGAAAACTCCCAAGAGATTACAGTAGGAAAAATCCTAAATTTTAAAGCAGGTTCATTTATGACGATTTTTCCATGCAATATTATTTCAAAATAGTTTTCCCTCCTCTTCCATTACTCATAGATTTCCATTTTTCTAGTCATGAAACTGTCTTTTCTAGAAACCAATAACCCATTTTCCTCCCTTATCAAAATGTTCGTTTCTTTCCCCATCAGACAGCTGTCTTTTTACCTCTTTCAGGTGAGCAGGTGTCACTCTTCCCCGTTGTTCCGCGCGTTCCTTTCTTTCCGCACCGTCGTTTTACACATTTTCCTTCTGCCTCCGGAGTCCCAAAGTATGTCTTTTTTCTGATTTCTGGACATCTTCTATTTAAAAAAAAGTGTACATGTAATTAAATTGATTCCTGTAATTAAATTGAATCGGAAACCTATCAGAGACACCCCCACACATAACATGTTCCTCCAATCAGCTCGCTCATAATTCAATTTTCCATCGAAAACTACTGCTCACAGATTTAGATTTCTTGATTCGGACCTGACCATTTTGTATGTTTTTTGAGCTGATGATGCCATCGGAATTTCGGAATTTTTCCGTTTTCTAATAAAACCAGACCGAGAGCTCTTGTCTGTTTTCATTTCTGTGCTACCAGCAGCACGAGAAGAAGCCTCTTCAAAAACCAATTTCAGTCAGTTGATAGAGGAGAAATGAAAAAATAGAATGAAATGGGTTGAAATTATGATTCGCTTTTGTTTTTCTTTCTTTTCCGCTCAAACTTTCATATTATTCTTGGCCGGCGCCGATGAAAATTGTGGCCGGAAATTCATTTAAAGGCGCATAGCAGGTCCTGAAGCGAAAACGGCAACGGTTTTTAC</canonical>
            <polymorphic>GTAACCCTCTTTTTTTCAATTTTTGAAAATGAATCCGAAAACTACAGTAAAAATTTTCTTCAGATTTCATAATTTTGTAAATCATTGGAATGTATAATCTTTGTTCGGATGTCCAATTTAAATCTTTCCCAGAAAACTCCCAAGAGATTACAGTAGGAAAAATCCTAAATTTTAAAGCAGGTTCATTTATGACGATTTTTCCATGCAATATTATTTCAAAATAGTTTTCCCTCCTCTTCCATTACTCATAGATTTCCATTTTTCTAGTCATGAAACTGTCTTTTCTAGAAACCAATAACCCATTTTCCTCCCTTATCAAAATGTTCGTTTCTTTCCCCATCAGACAGCTGTCTTTTTACCTCTTTCAGGTGAGCAGGTGTCACTCTTCCCCGTTGTTCCGCGCGTTCCTTTCTTTCCGCACCGTCGTTTTACACATTTTCCTTCTGCCTCCGGAGTCCCAAAGTATGTCTTTTTTCTGATTTCTGGACATCTTCTATTTRAAAAAAAGTGTACATGTAATTAAATTGATTCCTGTAATTAAATTGAATCGGAAACCTATCAGAGACACCCCCACACATAACATGTTCCTCCAATCAGCTCGCTCATAATTCAATTTTCCATCGAAAACTACTGCTCACAGATTTAGATTTCTTGATTCGGACCTGACCATTTTGTATGTTTTTTGAGCTGATGATGCCATCGGAATTTCGGAATTTTTCCGTTTTCTAATAAAACCAGACCGAGAGCTCTTGTCTGTTTTCATTTCTGTGCTACCAGCAGCACGAGAAGAAGCCTCTTCAAAAACCAATTTCAGTCAGTTGATAGAGGAGAAATGAAAAAATAGAATGAAATGGGTTGAAATTATGATTCGCTTTTGTTTTTCTTTCTTTTCCGCTCAAACTTTCATATTATTCTTGGCCGGCGCCGATGAAAATTGTGGCCGGAAATTCATTTAAAGGCGCATAGCAGGTCCTGAAGCGAAAACGGCAACGGTTTTTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>455 326 119 54 46</canonical_bands>
                <polymorphic_bands>781 119 54 46</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>415 326 118 54 47 22 18</canonical_bands>
                <polymorphic_bands>415 348 118 54 47 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGCTGTCTTTTTACCTCTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATTGGAGGAACATGTTATGTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGCTGTCTTTTTACCTCTTTCAGGTGAGCAGGTGTCACTCTTCCCCGTTGTTCCGCGCGTTCCTTTCTTTCCGCACCGTCGTTTTACACATTTTCCTTCTGCCTCCGGAGTCCCAAAGTATGTCTTTTTTCTGATTTCTGGACATCTTCTATTTAAAAAAAAGTGTACATGTAATTAAATTGATTCCTGTAATTAAATTGAATCGGAAACCTATCAGAGACACCCCCACACATAACATGTTCCTCCAAT</canonical_amplicon>
		<polymorphic_amplicon>CAGCTGTCTTTTTACCTCTTTCAGGTGAGCAGGTGTCACTCTTCCCCGTTGTTCCGCGCGTTCCTTTCTTTCCGCACCGTCGTTTTACACATTTTCCTTCTGCCTCCGGAGTCCCAAAGTATGTCTTTTTTCTGATTTCTGGACATCTTCTATTTRAAAAAAAGTGTACATGTAATTAAATTGATTCCTGTAATTAAATTGAATCGGAAACCTATCAGAGACACCCCCACACATAACATGTTCCTCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13671</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>346513</contig_pos>
        <strand></strand>
        <context>AGTGTACATG[T/C]AATTAAATTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTCTTTTTTCTGATTTCTGGACATCTTCTATTTAAAAAAAAGTGTACATG</left_flank>
        <right_flank>AATTAAATTGATTCCTGTAATTAAATTGAATCGGAAACCTATCAGAGACA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTTGAAAATGAATCCGAAAACTACAGTAAAAATTTTCTTCAGATTTCATAATTTTGTAAATCATTGGAATGTATAATCTTTGTTCGGATGTCCAATTTAAATCTTTCCCAGAAAACTCCCAAGAGATTACAGTAGGAAAAATCCTAAATTTTAAAGCAGGTTCATTTATGACGATTTTTCCATGCAATATTATTTCAAAATAGTTTTCCCTCCTCTTCCATTACTCATAGATTTCCATTTTTCTAGTCATGAAACTGTCTTTTCTAGAAACCAATAACCCATTTTCCTCCCTTATCAAAATGTTCGTTTCTTTCCCCATCAGACAGCTGTCTTTTTACCTCTTTCAGGTGAGCAGGTGTCACTCTTCCCCGTTGTTCCGCGCGTTCCTTTCTTTCCGCACCGTCGTTTTACACATTTTCCTTCTGCCTCCGGAGTCCCAAAGTATGTCTTTTTTCTGATTTCTGGACATCTTCTATTTAAAAAAAAGTGTACATGTAATTAAATTGATTCCTGTAATTAAATTGAATCGGAAACCTATCAGAGACACCCCCACACATAACATGTTCCTCCAATCAGCTCGCTCATAATTCAATTTTCCATCGAAAACTACTGCTCACAGATTTAGATTTCTTGATTCGGACCTGACCATTTTGTATGTTTTTTGAGCTGATGATGCCATCGGAATTTCGGAATTTTTCCGTTTTCTAATAAAACCAGACCGAGAGCTCTTGTCTGTTTTCATTTCTGTGCTACCAGCAGCACGAGAAGAAGCCTCTTCAAAAACCAATTTCAGTCAGTTGATAGAGGAGAAATGAAAAAATAGAATGAAATGGGTTGAAATTATGATTCGCTTTTGTTTTTCTTTCTTTTCCGCTCAAACTTTCATATTATTCTTGGCCGGCGCCGATGAAAATTGTGGCCGGAAATTCATTTAAAGGCGCATAGCAGGTCCTGAAGCGAAAACGGCAACGGTTTTTACAAATAAATTCGTTCGCT</canonical>
            <polymorphic>AATTTTTGAAAATGAATCCGAAAACTACAGTAAAAATTTTCTTCAGATTTCATAATTTTGTAAATCATTGGAATGTATAATCTTTGTTCGGATGTCCAATTTAAATCTTTCCCAGAAAACTCCCAAGAGATTACAGTAGGAAAAATCCTAAATTTTAAAGCAGGTTCATTTATGACGATTTTTCCATGCAATATTATTTCAAAATAGTTTTCCCTCCTCTTCCATTACTCATAGATTTCCATTTTTCTAGTCATGAAACTGTCTTTTCTAGAAACCAATAACCCATTTTCCTCCCTTATCAAAATGTTCGTTTCTTTCCCCATCAGACAGCTGTCTTTTTACCTCTTTCAGGTGAGCAGGTGTCACTCTTCCCCGTTGTTCCGCGCGTTCCTTTCTTTCCGCACCGTCGTTTTACACATTTTCCTTCTGCCTCCGGAGTCCCAAAGTATGTCTTTTTTCTGATTTCTGGACATCTTCTATTTAAAAAAAAGTGTACATGYAATTAAATTGATTCCTGTAATTAAATTGAATCGGAAACCTATCAGAGACACCCCCACACATAACATGTTCCTCCAATCAGCTCGCTCATAATTCAATTTTCCATCGAAAACTACTGCTCACAGATTTAGATTTCTTGATTCGGACCTGACCATTTTGTATGTTTTTTGAGCTGATGATGCCATCGGAATTTCGGAATTTTTCCGTTTTCTAATAAAACCAGACCGAGAGCTCTTGTCTGTTTTCATTTCTGTGCTACCAGCAGCACGAGAAGAAGCCTCTTCAAAAACCAATTTCAGTCAGTTGATAGAGGAGAAATGAAAAAATAGAATGAAATGGGTTGAAATTATGATTCGCTTTTGTTTTTCTTTCTTTTCCGCTCAAACTTTCATATTATTCTTGGCCGGCGCCGATGAAAATTGTGGCCGGAAATTCATTTAAAGGCGCATAGCAGGTCCTGAAGCGAAAACGGCAACGGTTTTTACAAATAAATTCGTTCGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>495 437 68</canonical_bands>
                <polymorphic_bands>563 437</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>495 437 68</canonical_bands>
                <polymorphic_bands>563 437</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>499 433 68</canonical_bands>
                <polymorphic_bands>567 433</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGCTGTCTTTTTACCTCTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATTGGAGGAACATGTTATGTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGCTGTCTTTTTACCTCTTTCAGGTGAGCAGGTGTCACTCTTCCCCGTTGTTCCGCGCGTTCCTTTCTTTCCGCACCGTCGTTTTACACATTTTCCTTCTGCCTCCGGAGTCCCAAAGTATGTCTTTTTTCTGATTTCTGGACATCTTCTATTTAAAAAAAAGTGTACATGTAATTAAATTGATTCCTGTAATTAAATTGAATCGGAAACCTATCAGAGACACCCCCACACATAACATGTTCCTCCAAT</canonical_amplicon>
		<polymorphic_amplicon>CAGCTGTCTTTTTACCTCTTTCAGGTGAGCAGGTGTCACTCTTCCCCGTTGTTCCGCGCGTTCCTTTCTTTCCGCACCGTCGTTTTACACATTTTCCTTCTGCCTCCGGAGTCCCAAAGTATGTCTTTTTTCTGATTTCTGGACATCTTCTATTTAAAAAAAAGTGTACATGYAATTAAATTGATTCCTGTAATTAAATTGAATCGGAAACCTATCAGAGACACCCCCACACATAACATGTTCCTCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13672</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>346532</contig_pos>
        <strand></strand>
        <context>TGATTCCTGT[A/G]ATTAAATTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACATCTTCTATTTAAAAAAAAGTGTACATGTAATTAAATTGATTCCTGT</left_flank>
        <right_flank>ATTAAATTGAATCGGAAACCTATCAGAGACACCCCCACACATAACATGTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAACTACAGTAAAAATTTTCTTCAGATTTCATAATTTTGTAAATCATTGGAATGTATAATCTTTGTTCGGATGTCCAATTTAAATCTTTCCCAGAAAACTCCCAAGAGATTACAGTAGGAAAAATCCTAAATTTTAAAGCAGGTTCATTTATGACGATTTTTCCATGCAATATTATTTCAAAATAGTTTTCCCTCCTCTTCCATTACTCATAGATTTCCATTTTTCTAGTCATGAAACTGTCTTTTCTAGAAACCAATAACCCATTTTCCTCCCTTATCAAAATGTTCGTTTCTTTCCCCATCAGACAGCTGTCTTTTTACCTCTTTCAGGTGAGCAGGTGTCACTCTTCCCCGTTGTTCCGCGCGTTCCTTTCTTTCCGCACCGTCGTTTTACACATTTTCCTTCTGCCTCCGGAGTCCCAAAGTATGTCTTTTTTCTGATTTCTGGACATCTTCTATTTAAAAAAAAGTGTACATGTAATTAAATTGATTCCTGTAATTAAATTGAATCGGAAACCTATCAGAGACACCCCCACACATAACATGTTCCTCCAATCAGCTCGCTCATAATTCAATTTTCCATCGAAAACTACTGCTCACAGATTTAGATTTCTTGATTCGGACCTGACCATTTTGTATGTTTTTTGAGCTGATGATGCCATCGGAATTTCGGAATTTTTCCGTTTTCTAATAAAACCAGACCGAGAGCTCTTGTCTGTTTTCATTTCTGTGCTACCAGCAGCACGAGAAGAAGCCTCTTCAAAAACCAATTTCAGTCAGTTGATAGAGGAGAAATGAAAAAATAGAATGAAATGGGTTGAAATTATGATTCGCTTTTGTTTTTCTTTCTTTTCCGCTCAAACTTTCATATTATTCTTGGCCGGCGCCGATGAAAATTGTGGCCGGAAATTCATTTAAAGGCGCATAGCAGGTCCTGAAGCGAAAACGGCAACGGTTTTTACAAATAAATTCGTTCGCTTTAAACAGTACTTCGGAAT</canonical>
            <polymorphic>GAAAACTACAGTAAAAATTTTCTTCAGATTTCATAATTTTGTAAATCATTGGAATGTATAATCTTTGTTCGGATGTCCAATTTAAATCTTTCCCAGAAAACTCCCAAGAGATTACAGTAGGAAAAATCCTAAATTTTAAAGCAGGTTCATTTATGACGATTTTTCCATGCAATATTATTTCAAAATAGTTTTCCCTCCTCTTCCATTACTCATAGATTTCCATTTTTCTAGTCATGAAACTGTCTTTTCTAGAAACCAATAACCCATTTTCCTCCCTTATCAAAATGTTCGTTTCTTTCCCCATCAGACAGCTGTCTTTTTACCTCTTTCAGGTGAGCAGGTGTCACTCTTCCCCGTTGTTCCGCGCGTTCCTTTCTTTCCGCACCGTCGTTTTACACATTTTCCTTCTGCCTCCGGAGTCCCAAAGTATGTCTTTTTTCTGATTTCTGGACATCTTCTATTTAAAAAAAAGTGTACATGTAATTAAATTGATTCCTGTRATTAAATTGAATCGGAAACCTATCAGAGACACCCCCACACATAACATGTTCCTCCAATCAGCTCGCTCATAATTCAATTTTCCATCGAAAACTACTGCTCACAGATTTAGATTTCTTGATTCGGACCTGACCATTTTGTATGTTTTTTGAGCTGATGATGCCATCGGAATTTCGGAATTTTTCCGTTTTCTAATAAAACCAGACCGAGAGCTCTTGTCTGTTTTCATTTCTGTGCTACCAGCAGCACGAGAAGAAGCCTCTTCAAAAACCAATTTCAGTCAGTTGATAGAGGAGAAATGAAAAAATAGAATGAAATGGGTTGAAATTATGATTCGCTTTTGTTTTTCTTTCTTTTCCGCTCAAACTTTCATATTATTCTTGGCCGGCGCCGATGAAAATTGTGGCCGGAAATTCATTTAAAGGCGCATAGCAGGTCCTGAAGCGAAAACGGCAACGGTTTTTACAAATAAATTCGTTCGCTTTAAACAGTACTTCGGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>350 95 92 73 66 60 53 53 44 31 19 15 13 13 8 5 5 5</canonical_bands>
                <polymorphic_bands>350 95 92 73 66 60 53 53 44 31 19 18 15 13 8 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGCTGTCTTTTTACCTCTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATTGGAGGAACATGTTATGTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGCTGTCTTTTTACCTCTTTCAGGTGAGCAGGTGTCACTCTTCCCCGTTGTTCCGCGCGTTCCTTTCTTTCCGCACCGTCGTTTTACACATTTTCCTTCTGCCTCCGGAGTCCCAAAGTATGTCTTTTTTCTGATTTCTGGACATCTTCTATTTAAAAAAAAGTGTACATGTAATTAAATTGATTCCTGTAATTAAATTGAATCGGAAACCTATCAGAGACACCCCCACACATAACATGTTCCTCCAAT</canonical_amplicon>
		<polymorphic_amplicon>CAGCTGTCTTTTTACCTCTTTCAGGTGAGCAGGTGTCACTCTTCCCCGTTGTTCCGCGCGTTCCTTTCTTTCCGCACCGTCGTTTTACACATTTTCCTTCTGCCTCCGGAGTCCCAAAGTATGTCTTTTTTCTGATTTCTGGACATCTTCTATTTAAAAAAAAGTGTACATGTAATTAAATTGATTCCTGTRATTAAATTGAATCGGAAACCTATCAGAGACACCCCCACACATAACATGTTCCTCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13704</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>347603</contig_pos>
        <strand>+</strand>
        <context>GAGCCAATTC[C/T]TCTCGTCCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACATATATCGGAAGACGGGGGTGCCCGCAAAAAGTATCAGAGCCAATTC</left_flank>
        <right_flank>TCTCGTCCTCTTTTTTCCCCTTTTTCTGCACCTCTAAAACCTACTCTCTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAAGAATTCAAACGGAAACAAGCACAAATCTGAGAAAAAATCCTATATATGCGCCTTTAGATAAAAGTTCGGTATAAAAATAAAAGTTTCATCGGCGCCGGACAAGAATAATATTGGCTGCTGCTATCTCTTTTTTTCCCGTTTTTCGCAACTTTTCGTCTAGTGATTCCCCAATTGTTGCCTCCAGAAAGCAGCGTGGCGCAGTGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGGTGGATCGAAACCACTCGCTGCTATATTTTTTTTTGCTGTTGAGCTAAATAACTTATACCACCCACACTCTCATTCAGAGTCAGTGACAAAAAAAGATATGAAGCAAGAGCCTAGAAAAACTAGACAAACAAAAATGGCGGGGAAACTTTATGAGACATATAAACAAGATCGCATCCCAGAAACACTTCTTCTTCTCGATTACATATTCGCACATATATCGGAAGACGGGGGTGCCCGCAAAAAGTATCAGAGCCAATTCTTCTCGTCCTCTTTTTTCCCCTTTTTCTGCACCTCTAAAACCTACTCTCTCATCTATATGATGAGACTTCTTCTTCTTCCTCTTCTCTTCCCTCTTCCAATTAGAGATATACACACCTTCACAGATTTTTCTGCAACCGGTATGCCTGGAGCCTTTGAGAGTAGCTTTCTAGATATATAAAATAATTACAAAAAGGCATGACTGAATGGTATTTACATTTCTCATTTAATCATCAGATTTTGGGGTTTTTCGGGAAAAAAGGAACAAAATAGCCCGAGGCGAAACAATGAGTACGGGAGGAGCATGTGTATGCGCTATGCTTTCAAGTCAACAGAATATAAGCACTTGGCTCAGGGGGTAAAGTAGGCGTCGCTCCTTTCCTACCCGTTTTTTTCTCCCATTTATTATTATTCTCTGTATATTATTCTTGCGCCTTCCGGATTACTTTCGCTCTTCCCATCGTCGTCGTCCCTGACTCTTCGTCACCTTTTCCTTCCGTTT</canonical>
            <polymorphic>CTGAAGAATTCAAACGGAAACAAGCACAAATCTGAGAAAAAATCCTATATATGCGCCTTTAGATAAAAGTTCGGTATAAAAATAAAAGTTTCATCGGCGCCGGACAAGAATAATATTGGCTGCTGCTATCTCTTTTTTTCCCGTTTTTCGCAACTTTTCGTCTAGTGATTCCCCAATTGTTGCCTCCAGAAAGCAGCGTGGCGCAGTGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGGTGGATCGAAACCACTCGCTGCTATATTTTTTTTTGCTGTTGAGCTAAATAACTTATACCACCCACACTCTCATTCAGAGTCAGTGACAAAAAAAGATATGAAGCAAGAGCCTAGAAAAACTAGACAAACAAAAATGGCGGGGAAACTTTATGAGACATATAAACAAGATCGCATCCCAGAAACACTTCTTCTTCTCGATTACATATTCGCACATATATCGGAAGACGGGGGTGCCCGCAAAAAGTATCAGAGCCAATTCYTCTCGTCCTCTTTTTTCCCCTTTTTCTGCACCTCTAAAACCTACTCTCTCATCTATATGATGAGACTTCTTCTTCTTCCTCTTCTCTTCCCTCTTCCAATTAGAGATATACACACCTTCACAGATTTTTCTGCAACCGGTATGCCTGGAGCCTTTGAGAGTAGCTTTCTAGATATATAAAATAATTACAAAAAGGCATGACTGAATGGTATTTACATTTCTCATTTAATCATCAGATTTTGGGGTTTTTCGGGAAAAAAGGAACAAAATAGCCCGAGGCGAAACAATGAGTACGGGAGGAGCATGTGTATGCGCTATGCTTTCAAGTCAACAGAATATAAGCACTTGGCTCAGGGGGTAAAGTAGGCGTCGCTCCTTTCCTACCCGTTTTTTTCTCCCATTTATTATTATTCTCTGTATATTATTCTTGCGCCTTCCGGATTACTTTCGCTCTTCCCATCGTCGTCGTCCCTGACTCTTCGTCACCTTTTCCTTCCGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAACTTTATGAGACATATAAACAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAAAATCTGTGAAGGTGTGTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGAAACTTTATGAGACATATAAACAAGATCGCATCCCAGAAACACTTCTTCTTCTCGATTACATATTCGCACATATATCGGAAGACGGGGGTGCCCGCAAAAAGTATCAGAGCCAATTCTTCTCGTCCTCTTTTTTCCCCTTTTTCTGCACCTCTAAAACCTACTCTCTCATCTATATGATGAGACTTCTTCTTCTTCCTCTTCTCTTCCCTCTTCCAATTAGAGATATACACACCTTCACAGATTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>GGAAACTTTATGAGACATATAAACAAGATCGCATCCCAGAAACACTTCTTCTTCTCGATTACATATTCGCACATATATCGGAAGACGGGGGTGCCCGCAAAAAGTATCAGAGCCAATTCYTCTCGTCCTCTTTTTTCCCCTTTTTCTGCACCTCTAAAACCTACTCTCTCATCTATATGATGAGACTTCTTCTTCTTCCTCTTCTCTTCCCTCTTCCAATTAGAGATATACACACCTTCACAGATTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13780</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>351437</contig_pos>
        <strand>+</strand>
        <context>ATAACCGATT[A/G]TTGAATGTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACAAAATTCACCACCTTAAAATTAAATTGTGGAATCTCGATAACCGATT</left_flank>
        <right_flank>TTGAATGTCTTCAGACTTTCGATCTTCTATAAACCTAGGAAAATCGAAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACGCCACAAAAATAGACATTATCAAGCGATTGACGTAGATGGGCTACACTTTTGTGCAAAGCTTTGCAAAGAATTGGATTTGAAGAGAATATAATTTTAAAAATGTACTGAAACTTTCCCAAAATATATACATACGACAACTGGAGCATCAAAAATAAATATTTTGTATCCTGAAGTTTTGCTTCTTAACAAAAGCAGTGGAGAAATTCTTCATCGCTTCATTGTGTTAAAAAGTATATAGGTTCCATTAAAAATTTAGAAAAAAAATCAAGAAAAATCCTAAAATGAGAAAAACCGGATCGAAAAAAGCGAATTGGTATCTGGTGGCTGGCGGCCTAATCTGAGTTTTCTAGTCCCTTGGCCATAGGATTTTTTTTTGGAATTTCGCTGATAGGATTTTTTTTTGGAATTTTTCTTTATGTCTATGTTAACATACATACTTTTTTGGACAAAATTCACCACCTTAAAATTAAATTGTGGAATCTCGATAACCGATTATTGAATGTCTTCAGACTTTCGATCTTCTATAAACCTAGGAAAATCGAAACTTGCATAAAAATAAAGCTAATTGAGTATACATCAAGAACTCAAAAACCACCAACACCTTCTTATTCTCTTCCTATTCTGATCCTGATCCTTATCCAAAGCTTTTCTTATCCGCCTCCTCCTCCCTTTCCCAGATTTGTCTATTCTCTGCAACTTGCCATTTCATTATTTTTTCCAACGCACATGACTTAGAATCTTGTCAATGGGAGAAATCAACAAAAAAAGGAAAACATCTGAAATTCAAAGAATTTGGGGTTATGAATATACAACTAATTTAGTTTGAAGTTAGTATTAACAAGTAAGAAATCAGAATACAATTGGTTGGCAAGGTGATAAATCTGAAAAGATGGCTTCTTTTCTTGTTTTTTTAGTGCGATCTACTTTTTCTAGATCTTTCCTCAAAAAGCCTTTTCTCGTTTTTTATATACGATAATACCCGAGAAACTAAGAAA</canonical>
            <polymorphic>AAACGCCACAAAAATAGACATTATCAAGCGATTGACGTAGATGGGCTACACTTTTGTGCAAAGCTTTGCAAAGAATTGGATTTGAAGAGAATATAATTTTAAAAATGTACTGAAACTTTCCCAAAATATATACATACGACAACTGGAGCATCAAAAATAAATATTTTGTATCCTGAAGTTTTGCTTCTTAACAAAAGCAGTGGAGAAATTCTTCATCGCTTCATTGTGTTAAAAAGTATATAGGTTCCATTAAAAATTTAGAAAAAAAATCAAGAAAAATCCTAAAATGAGAAAAACCGGATCGAAAAAAGCGAATTGGTATCTGGTGGCTGGCGGCCTAATCTGAGTTTTCTAGTCCCTTGGCCATAGGATTTTTTTTTGGAATTTCGCTGATAGGATTTTTTTTTGGAATTTTTCTTTATGTCTATGTTAACATACATACTTTTTTGGACAAAATTCACCACCTTAAAATTAAATTGTGGAATCTCGATAACCGATTRTTGAATGTCTTCAGACTTTCGATCTTCTATAAACCTAGGAAAATCGAAACTTGCATAAAAATAAAGCTAATTGAGTATACATCAAGAACTCAAAAACCACCAACACCTTCTTATTCTCTTCCTATTCTGATCCTGATCCTTATCCAAAGCTTTTCTTATCCGCCTCCTCCTCCCTTTCCCAGATTTGTCTATTCTCTGCAACTTGCCATTTCATTATTTTTTCCAACGCACATGACTTAGAATCTTGTCAATGGGAGAAATCAACAAAAAAAGGAAAACATCTGAAATTCAAAGAATTTGGGGTTATGAATATACAACTAATTTAGTTTGAAGTTAGTATTAACAAGTAAGAAATCAGAATACAATTGGTTGGCAAGGTGATAAATCTGAAAAGATGGCTTCTTTTCTTGTTTTTTTAGTGCGATCTACTTTTTCTAGATCTTTCCTCAAAAAGCCTTTTCTCGTTTTTTATATACGATAATACCCGAGAAACTAAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCTGAAGTTTTGCTTCTTAAC</pcr_primer_p1>
		<pcr_primer_p2>TGCAAGTTTCGATTTTCCTA</pcr_primer_p2>
		<pcr_amplicon_size>386</pcr_amplicon_size>
		<canonical_amplicon>ATCCTGAAGTTTTGCTTCTTAACAAAAGCAGTGGAGAAATTCTTCATCGCTTCATTGTGTTAAAAAGTATATAGGTTCCATTAAAAATTTAGAAAAAAAATCAAGAAAAATCCTAAAATGAGAAAAACCGGATCGAAAAAAGCGAATTGGTATCTGGTGGCTGGCGGCCTAATCTGAGTTTTCTAGTCCCTTGGCCATAGGATTTTTTTTTGGAATTTCGCTGATAGGATTTTTTTTTGGAATTTTTCTTTATGTCTATGTTAACATACATACTTTTTTGGACAAAATTCACCACCTTAAAATTAAATTGTGGAATCTCGATAACCGATTATTGAATGTCTTCAGACTTTCGATCTTCTATAAACCTAGGAAAATCGAAACTTGCA</canonical_amplicon>
		<polymorphic_amplicon>ATCCTGAAGTTTTGCTTCTTAACAAAAGCAGTGGAGAAATTCTTCATCGCTTCATTGTGTTAAAAAGTATATAGGTTCCATTAAAAATTTAGAAAAAAAATCAAGAAAAATCCTAAAATGAGAAAAACCGGATCGAAAAAAGCGAATTGGTATCTGGTGGCTGGCGGCCTAATCTGAGTTTTCTAGTCCCTTGGCCATAGGATTTTTTTTTGGAATTTCGCTGATAGGATTTTTTTTTGGAATTTTTCTTTATGTCTATGTTAACATACATACTTTTTTGGACAAAATTCACCACCTTAAAATTAAATTGTGGAATCTCGATAACCGATTRTTGAATGTCTTCAGACTTTCGATCTTCTATAAACCTAGGAAAATCGAAACTTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13781</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>354100</contig_pos>
        <strand>+</strand>
        <context>CGTTCCAATT[C/T]GACCTWCTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACTATACACGGGATTAACGGACAGCCCTCCAAAACGACTCGTTCCAATT</left_flank>
        <right_flank>GACCTACTTTGTGTCACATCTCATCAAATATGTTTCATGTCAAAAATGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCCTTTTTCCGGAATCTTCAAATGTTTGAATTCCAAATTGTTTTCTTTTTCCTAAAGTTCCCACTCTCTTATGAACCACTTCAAACTTTACCGAGTATCCTCTTTTTACCGAGTATCCAAATATTTTCAAGCTCTTTCTATTTTCAGATGGAATAAAAAAGAATCTCCAGGAAGAGAAAGATGAAATTCCGATCGCTGGCCTTGTCGCTCCGTGTGTTCGGCGTCAAGAATCGTCTGTTGCAAGCAAATCAAAATGAGGTGGGTCCCTCCTATTTTTCACTCGATATTTGACACACAACCTTTTTTCCTTTCGCGCAGCATTTTTCTTGCTCTCTACGCTCAAATGAATAGAGACACATTTGCATTTTTTATTTGCTACCTTCCCATCGAAAAAAATTTTGTCTTCTTTTTCTTCGTTTGGTTCCGTTTTTCTGTCCATTTGTCACTAGACTATACACGGGATTAACGGACAGCCCTCCAAAACGACTCGTTCCAATTCGACCTACTTTGTGTCACATCTCATCAAATATGTTTCATGTCAAAAATGAAGTGGTAGAAGTGTTACTTTTTACTACTCAGTTACTTTTTGGAATTTAGTACGAGAGAGAATGCGATTATTGTTTGGAGAAATACCGTGCATACGGTAGAAGGACCCCTTAACTTCTAACTTTGAACCAATTTATCTACGTTCCTGTGAAAGATTCAAAAAAGTTATCAACTGATAAATTGTTTATTAAAATGTCAAAAACATTTTATTAATGTGATATATTCTTGACATCTTTTATTGTTGCCAAGAAAAATTAACTCAAGTTTGATAGTGTGGGTGCCCTTCTATTACAGGGTTCTAAAAGTTGTATTTTGAAAAAAAATTCCCGTTCGAAAATTTCAGAATTGTGAGTTTCAAAATTTTTGACATATTGGTTGTATTTAATTCCACAGATAGCCGAAATTCCAAATGCGAATTTTTGGAAATTTTCTGGAAATGTTCAAAATCCATGT</canonical>
            <polymorphic>TGCCTTTTTCCGGAATCTTCAAATGTTTGAATTCCAAATTGTTTTCTTTTTCCTAAAGTTCCCACTCTCTTATGAACCACTTCAAACTTTACCGAGTATCCTCTTTTTACCGAGTATCCAAATATTTTCAAGCTCTTTCTATTTTCAGATGGAATAAAAAAGAATCTCCAGGAAGAGAAAGATGAAATTCCGATCGCTGGCCTTGTCGCTCCGTGTGTTCGGCGTCAAGAATCGTCTGTTGCAAGCAAATCAAAATGAGGTGGGTCCCTCCTATTTTTCACTCGATATTTGACACACAACCTTTTTTCCTTTCGCGCAGCATTTTTCTTGCTCTCTACGCTCAAATGAATAGAGACACATTTGCATTTTTTATTTGCTACCTTCCCATCGAAAAAAATTTTGTCTTCTTTTTCTTCGTTTGGTTCCGTTTTTCTGTCCATTTGTCACTAGACTATACACGGGATTAACGGACAGCCCTCCAAAACGACTCGTTCCAATTYGACCTACTTTGTGTCACATCTCATCAAATATGTTTCATGTCAAAAATGAAGTGGTAGAAGTGTTACTTTTTACTACTCAGTTACTTTTTGGAATTTAGTACGAGAGAGAATGCGATTATTGTTTGGAGAAATACCGTGCATACGGTAGAAGGACCCCTTAACTTCTAACTTTGAACCAATTTATCTACGTTCCTGTGAAAGATTCAAAAAAGTTATCAACTGATAAATTGTTTATTAAAATGTCAAAAACATTTTATTAATGTGATATATTCTTGACATCTTTTATTGTTGCCAAGAAAAATTAACTCAAGTTTGATAGTGTGGGTGCCCTTCTATTACAGGGTTCTAAAAGTTGTATTTTGAAAAAAAATTCCCGTTCGAAAATTTCAGAATTGTGAGTTTCAAAATTTTTGACATATTGGTTGTATTTAATTCCACAGATAGCCGAAATTCCAAATGCGAATTTTTGGAAATTTTCTGGAAATGTTCAAAATCCATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>379 283 121 111 106</canonical_bands>
                <polymorphic_bands>490 283 121 106</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGCATTTTTCTTGCTCTCTAC</pcr_primer_p1>
		<pcr_primer_p2>ACACTTCTACCACTTCATTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAGCATTTTTCTTGCTCTCTACGCTCAAATGAATAGAGACACATTTGCATTTTTTATTTGCTACCTTCCCATCGAAAAAAATTTTGTCTTCTTTTTCTTCGTTTGGTTCCGTTTTTCTGTCCATTTGTCACTAGACTATACACGGGATTAACGGACAGCCCTCCAAAACGACTCGTTCCAATTCGACCTACTTTGTGTCACATCTCATCAAATATGTTTCATGTCAAAAATGAAGTGGTAGAAGTGT</canonical_amplicon>
		<polymorphic_amplicon>CAGCATTTTTCTTGCTCTCTACGCTCAAATGAATAGAGACACATTTGCATTTTTTATTTGCTACCTTCCCATCGAAAAAAATTTTGTCTTCTTTTTCTTCGTTTGGTTCCGTTTTTCTGTCCATTTGTCACTAGACTATACACGGGATTAACGGACAGCCCTCCAAAACGACTCGTTCCAATTYGACCTACTTTGTGTCACATCTCATCAAATATGTTTCATGTCAAAAATGAAGTGGTAGAAGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13782</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>478612</contig_pos>
        <strand>+</strand>
        <context>AACTTTCGAA[C/G]GCTCTCAGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTGCAACTATGAATCCAGGTGGTGATTATGGAAAGAAGGAACTTTCGAA</left_flank>
        <right_flank>GCTCTCAGGAATCGATTCACAGAAGTATGGACGTCTAGTGATTACACCAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATGGAATCTCCATACATGCCTATTGATGTAATCACTGATAAAGTTGTTCTGACACTTGGAATGAGAAGGATGCTCGTGTTGACAGAACAAGCATGGCTCCGAAACGAAGCTGTGTTGATGGTTGGAGAGACTGGAGGTGGAAAAACGACACTTTCAGAATTAGTTGGAAGAGGCAAACTTCGTAGCATCAATTGTCACGAAAAAACCGAAACTGCTGATCTTCTTGGAAGACTGCGCCCAAAACATGATGGAGGATTTGAGTGGTCAGATGGAGTTGTTATCAGTGCTATGCGCGAAGGAGCTCCGCTGCTTGTTGATGAAATTTCACTTGCCGAAGATTCAGTTCTAGAAAGACTCAATCCATTATTCGAAGAAGATCGTGCACTGCTCTTATCTGATGCAGGAACTGAAACCGAAGTTGTTCAGTCACAGTCAGGATTCCAGATAATTGCAACTATGAATCCAGGTGGTGATTATGGAAAGAAGGAACTTTCGAAGGCTCTCAGGAATCGATTCACAGAAGTATGGACGTCTAGTGATTACACCACATCTGAACTTGCAACTATTTTTGATCACAGACTTGCAAGGGTGGAGGCAACCAGAGAAGAATCTAGAATATCACCGACAAAAACAGCCACCTCTATTGTCACATGGATTTCTCAATTTTTCGGAAAATATTCTCATGTGTTCAGGTGAGTTCAAAAAACTTTGTTTTCCTGAATACTGAGTATAATATTTTTTTCCAGACATGCCCCATCCGTTCGAGATGTTGTTGCTTGTGCAGAACTTTATTCTTCCGCGGTGACTGCTCAGATCGATTCTCCAATTGCTATCAGAGATGCGTTGTGTGCTGTATTCCTGGATTCTCTCGCTGGACTGACAACTCGTCTTCATATTGACGCAGAAGAAGTGTTCGATGATGCACTGACTATGGTAAGCTGAACTTCTGATTATATATTCAAGAAATAACGTTTTTCCAGCTTCACACCAAACTAGTC</canonical>
            <polymorphic>CTATGGAATCTCCATACATGCCTATTGATGTAATCACTGATAAAGTTGTTCTGACACTTGGAATGAGAAGGATGCTCGTGTTGACAGAACAAGCATGGCTCCGAAACGAAGCTGTGTTGATGGTTGGAGAGACTGGAGGTGGAAAAACGACACTTTCAGAATTAGTTGGAAGAGGCAAACTTCGTAGCATCAATTGTCACGAAAAAACCGAAACTGCTGATCTTCTTGGAAGACTGCGCCCAAAACATGATGGAGGATTTGAGTGGTCAGATGGAGTTGTTATCAGTGCTATGCGCGAAGGAGCTCCGCTGCTTGTTGATGAAATTTCACTTGCCGAAGATTCAGTTCTAGAAAGACTCAATCCATTATTCGAAGAAGATCGTGCACTGCTCTTATCTGATGCAGGAACTGAAACCGAAGTTGTTCAGTCACAGTCAGGATTCCAGATAATTGCAACTATGAATCCAGGTGGTGATTATGGAAAGAAGGAACTTTCGAASGCTCTCAGGAATCGATTCACAGAAGTATGGACGTCTAGTGATTACACCACATCTGAACTTGCAACTATTTTTGATCACAGACTTGCAAGGGTGGAGGCAACCAGAGAAGAATCTAGAATATCACCGACAAAAACAGCCACCTCTATTGTCACATGGATTTCTCAATTTTTCGGAAAATATTCTCATGTGTTCAGGTGAGTTCAAAAAACTTTGTTTTCCTGAATACTGAGTATAATATTTTTTTCCAGACATGCCCCATCCGTTCGAGATGTTGTTGCTTGTGCAGAACTTTATTCTTCCGCGGTGACTGCTCAGATCGATTCTCCAATTGCTATCAGAGATGCGTTGTGTGCTGTATTCCTGGATTCTCTCGCTGGACTGACAACTCGTCTTCATATTGACGCAGAAGAAGTGTTCGATGATGCACTGACTATGGTAAGCTGAACTTCTGATTATATATTCAAGAAATAACGTTTTTCCAGCTTCACACCAAACTAGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>304 198 192 135 98 42 18 13</canonical_bands>
                <polymorphic_bands>333 304 192 98 42 18 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGTTGTTCAGTCACAGTCAG</pcr_primer_p1>
		<pcr_primer_p2>GAGAAATCCATGTGACAATAGAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAGTTGTTCAGTCACAGTCAGGATTCCAGATAATTGCAACTATGAATCCAGGTGGTGATTATGGAAAGAAGGAACTTTCGAAGGCTCTCAGGAATCGATTCACAGAAGTATGGACGTCTAGTGATTACACCACATCTGAACTTGCAACTATTTTTGATCACAGACTTGCAAGGGTGGAGGCAACCAGAGAAGAATCTAGAATATCACCGACAAAAACAGCCACCTCTATTGTCACATGGATTTCTC</canonical_amplicon>
		<polymorphic_amplicon>GAAGTTGTTCAGTCACAGTCAGGATTCCAGATAATTGCAACTATGAATCCAGGTGGTGATTATGGAAAGAAGGAACTTTCGAASGCTCTCAGGAATCGATTCACAGAAGTATGGACGTCTAGTGATTACACCACATCTGAACTTGCAACTATTTTTGATCACAGACTTGCAAGGGTGGAGGCAACCAGAGAAGAATCTAGAATATCACCGACAAAAACAGCCACCTCTATTGTCACATGGATTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13783</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>478690</contig_pos>
        <strand>+</strand>
        <context>TTTTTGATCA[A/C]AGACTTGCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGGACGTCTAGTGATTACACCACATCTGAACTTGCAACTATTTTTGATCA</left_flank>
        <right_flank>AGACTTGCAAGGGTGGAGGCAACCAGAGAAGAATCTAGAATATCACCGAC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTGACAGAACAAGCATGGCTCCGAAACGAAGCTGTGTTGATGGTTGGAGAGACTGGAGGTGGAAAAACGACACTTTCAGAATTAGTTGGAAGAGGCAAACTTCGTAGCATCAATTGTCACGAAAAAACCGAAACTGCTGATCTTCTTGGAAGACTGCGCCCAAAACATGATGGAGGATTTGAGTGGTCAGATGGAGTTGTTATCAGTGCTATGCGCGAAGGAGCTCCGCTGCTTGTTGATGAAATTTCACTTGCCGAAGATTCAGTTCTAGAAAGACTCAATCCATTATTCGAAGAAGATCGTGCACTGCTCTTATCTGATGCAGGAACTGAAACCGAAGTTGTTCAGTCACAGTCAGGATTCCAGATAATTGCAACTATGAATCCAGGTGGTGATTATGGAAAGAAGGAACTTTCGAAGGCTCTCAGGAATCGATTCACAGAAGTATGGACGTCTAGTGATTACACCACATCTGAACTTGCAACTATTTTTGATCACAGACTTGCAAGGGTGGAGGCAACCAGAGAAGAATCTAGAATATCACCGACAAAAACAGCCACCTCTATTGTCACATGGATTTCTCAATTTTTCGGAAAATATTCTCATGTGTTCAGGTGAGTTCAAAAAACTTTGTTTTCCTGAATACTGAGTATAATATTTTTTTCCAGACATGCCCCATCCGTTCGAGATGTTGTTGCTTGTGCAGAACTTTATTCTTCCGCGGTGACTGCTCAGATCGATTCTCCAATTGCTATCAGAGATGCGTTGTGTGCTGTATTCCTGGATTCTCTCGCTGGACTGACAACTCGTCTTCATATTGACGCAGAAGAAGTGTTCGATGATGCACTGACTATGGTAAGCTGAACTTCTGATTATATATTCAAGAAATAACGTTTTTCCAGCTTCACACCAAACTAGTCAAAACAGAACTCGTCAGCCAATTCTCTGATGTTTCTAATTTCATCCAAGAAGCCAAGAAAACAGTTCTAATTGAGCAA</canonical>
            <polymorphic>TGTTGACAGAACAAGCATGGCTCCGAAACGAAGCTGTGTTGATGGTTGGAGAGACTGGAGGTGGAAAAACGACACTTTCAGAATTAGTTGGAAGAGGCAAACTTCGTAGCATCAATTGTCACGAAAAAACCGAAACTGCTGATCTTCTTGGAAGACTGCGCCCAAAACATGATGGAGGATTTGAGTGGTCAGATGGAGTTGTTATCAGTGCTATGCGCGAAGGAGCTCCGCTGCTTGTTGATGAAATTTCACTTGCCGAAGATTCAGTTCTAGAAAGACTCAATCCATTATTCGAAGAAGATCGTGCACTGCTCTTATCTGATGCAGGAACTGAAACCGAAGTTGTTCAGTCACAGTCAGGATTCCAGATAATTGCAACTATGAATCCAGGTGGTGATTATGGAAAGAAGGAACTTTCGAAGGCTCTCAGGAATCGATTCACAGAAGTATGGACGTCTAGTGATTACACCACATCTGAACTTGCAACTATTTTTGATCAMAGACTTGCAAGGGTGGAGGCAACCAGAGAAGAATCTAGAATATCACCGACAAAAACAGCCACCTCTATTGTCACATGGATTTCTCAATTTTTCGGAAAATATTCTCATGTGTTCAGGTGAGTTCAAAAAACTTTGTTTTCCTGAATACTGAGTATAATATTTTTTTCCAGACATGCCCCATCCGTTCGAGATGTTGTTGCTTGTGCAGAACTTTATTCTTCCGCGGTGACTGCTCAGATCGATTCTCCAATTGCTATCAGAGATGCGTTGTGTGCTGTATTCCTGGATTCTCTCGCTGGACTGACAACTCGTCTTCATATTGACGCAGAAGAAGTGTTCGATGATGCACTGACTATGGTAAGCTGAACTTCTGATTATATATTCAAGAAATAACGTTTTTCCAGCTTCACACCAAACTAGTCAAAACAGAACTCGTCAGCCAATTCTCTGATGTTTCTAATTTCATCCAAGAAGCCAAGAAAACAGTTCTAATTGAGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>89 86 66 62 61 55 47 45 45 44 41 40 38 38 30 28 25 23 23 21 16 16 12 12 11 8 6 3 3 2 2 2</canonical_bands>
                <polymorphic_bands>89 86 66 62 61 55 47 45 45 44 44 41 40 38 38 30 25 23 23 21 16 12 12 11 8 6 3 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGTTGTTCAGTCACAGTCAG</pcr_primer_p1>
		<pcr_primer_p2>GAGAAATCCATGTGACAATAGAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAGTTGTTCAGTCACAGTCAGGATTCCAGATAATTGCAACTATGAATCCAGGTGGTGATTATGGAAAGAAGGAACTTTCGAAGGCTCTCAGGAATCGATTCACAGAAGTATGGACGTCTAGTGATTACACCACATCTGAACTTGCAACTATTTTTGATCACAGACTTGCAAGGGTGGAGGCAACCAGAGAAGAATCTAGAATATCACCGACAAAAACAGCCACCTCTATTGTCACATGGATTTCTC</canonical_amplicon>
		<polymorphic_amplicon>GAAGTTGTTCAGTCACAGTCAGGATTCCAGATAATTGCAACTATGAATCCAGGTGGTGATTATGGAAAGAAGGAACTTTCGAAGGCTCTCAGGAATCGATTCACAGAAGTATGGACGTCTAGTGATTACACCACATCTGAACTTGCAACTATTTTTGATCAMAGACTTGCAAGGGTGGAGGCAACCAGAGAAGAATCTAGAATATCACCGACAAAAACAGCCACCTCTATTGTCACATGGATTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13784</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>480020</contig_pos>
        <strand>+</strand>
        <context>ATGGCAAGAA[C/T]ACGTAGAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCTGGACGATCTCTTGGAGAAGGTTTTGAATTGGTGTACATGGCAAGAA</left_flank>
        <right_flank>ACGTAGAGAAGAAGACAAAGAGCTGATAAGATCCATTTACGAGAAAACGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCTCAAAGCGATCAAGAAAGGAGAATGGATCTTACTTGATGAAATGAATTTGGCTTCGCAGTCGGTTTTAGAAGGACTCAATGCGTGCTTCGATCATAGAAAAGTATTGTACATTGCTGAATTGAATCGAGAATTCGTGATCCCAGCCACGTCAAACTGCAGGTTCTTCGCCTGTCAAAATCCACGAGTTCAAGGAGGCAACAGAAGAGCACTTCCGAAGTCGTTCGTTAATCGTTTCACAAATATCTACACAAACGATTTGACAAAGGAGGACATCGTGATTGTGTTGAACGGAGTAGATGAGAAGAATCTTTTGAGTGATGAGCAACAAAGAGCTATGGTCACCATCAGCGAGCAATGTGAAAAAGAGTCGGAACGAGGAACTCTCCTAGGAGGACCCTATTCATTCAATCTAAGAGATCTGCTCAGATGGTATGATTTGATAGCAGCTGGACGATCTCTTGGAGAAGGTTTTGAATTGGTGTACATGGCAAGAATACGTAGAGAAGAAGACAAAGAGCTGATAAGATCCATTTACGAGAAAACGACGAATGAGAAGTTGGTGAGCAGATCAGTTTTATTAACTGTTGATGCGAAGGATATGCGAATCGGAAAATGCACATTGAAACGAAATCCCCAAACTACCCCAATTGCGAGCAAACGCCGACTTCTAGCATCTCAAATGACTTTGACACATAGCGTTGCTACTTGTGTTGAACTTAATTGGCTCACACTGTTGGTTGGACCGAGAAATTGTGGAAAAAGAACCGTCATTGAGAATATTGCCAATATCTGCAATAGGAAGTTGAAGTCGATCACTTTGAATGCAGACACTGATGCGCAAGAGTTGATTGGAAACTATGAACAAGTTGTGGATGAAGATTGTCTTCCTGATGCCAAGAAGAAAATCATTGAGATTTTTCAAAAGAAAAATGTTCCAGTCGACAGAGTTCAGCAAGTCGACGATTTGAACAAGCTAGAAGCCACCGTCGAATTGA</canonical>
            <polymorphic>GTTCTCAAAGCGATCAAGAAAGGAGAATGGATCTTACTTGATGAAATGAATTTGGCTTCGCAGTCGGTTTTAGAAGGACTCAATGCGTGCTTCGATCATAGAAAAGTATTGTACATTGCTGAATTGAATCGAGAATTCGTGATCCCAGCCACGTCAAACTGCAGGTTCTTCGCCTGTCAAAATCCACGAGTTCAAGGAGGCAACAGAAGAGCACTTCCGAAGTCGTTCGTTAATCGTTTCACAAATATCTACACAAACGATTTGACAAAGGAGGACATCGTGATTGTGTTGAACGGAGTAGATGAGAAGAATCTTTTGAGTGATGAGCAACAAAGAGCTATGGTCACCATCAGCGAGCAATGTGAAAAAGAGTCGGAACGAGGAACTCTCCTAGGAGGACCCTATTCATTCAATCTAAGAGATCTGCTCAGATGGTATGATTTGATAGCAGCTGGACGATCTCTTGGAGAAGGTTTTGAATTGGTGTACATGGCAAGAAYACGTAGAGAAGAAGACAAAGAGCTGATAAGATCCATTTACGAGAAAACGACGAATGAGAAGTTGGTGAGCAGATCAGTTTTATTAACTGTTGATGCGAAGGATATGCGAATCGGAAAATGCACATTGAAACGAAATCCCCAAACTACCCCAATTGCGAGCAAACGCCGACTTCTAGCATCTCAAATGACTTTGACACATAGCGTTGCTACTTGTGTTGAACTTAATTGGCTCACACTGTTGGTTGGACCGAGAAATTGTGGAAAAAGAACCGTCATTGAGAATATTGCCAATATCTGCAATAGGAAGTTGAAGTCGATCACTTTGAATGCAGACACTGATGCGCAAGAGTTGATTGGAAACTATGAACAAGTTGTGGATGAAGATTGTCTTCCTGATGCCAAGAAGAAAATCATTGAGATTTTTCAAAAGAAAAATGTTCCAGTCGACAGAGTTCAGCAAGTCGACGATTTGAACAAGCTAGAAGCCACCGTCGAATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TACGTA</site>
                <isoschizomers>
                    <enzyme>BstSNI</enzyme>
                    <enzyme>Eco105I</enzyme>
                    <enzyme>SnaBI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAAGAATCTTTTGAGTGATGA</pcr_primer_p1>
		<pcr_primer_p2>ATTCGTCGTTTTCTCGTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GAGAAGAATCTTTTGAGTGATGAGCAACAAAGAGCTATGGTCACCATCAGCGAGCAATGTGAAAAAGAGTCGGAACGAGGAACTCTCCTAGGAGGACCCTATTCATTCAATCTAAGAGATCTGCTCAGATGGTATGATTTGATAGCAGCTGGACGATCTCTTGGAGAAGGTTTTGAATTGGTGTACATGGCAAGAATACGTAGAGAAGAAGACAAAGAGCTGATAAGATCCATTTACGAGAAAACGACGAAT</canonical_amplicon>
		<polymorphic_amplicon>GAGAAGAATCTTTTGAGTGATGAGCAACAAAGAGCTATGGTCACCATCAGCGAGCAATGTGAAAAAGAGTCGGAACGAGGAACTCTCCTAGGAGGACCCTATTCATTCAATCTAAGAGATCTGCTCAGATGGTATGATTTGATAGCAGCTGGACGATCTCTTGGAGAAGGTTTTGAATTGGTGTACATGGCAAGAAYACGTAGAGAAGAAGACAAAGAGCTGATAAGATCCATTTACGAGAAAACGACGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13785</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>554866</contig_pos>
        <strand>+</strand>
        <context>AATTTTCGAA[A/G]AAGGATTATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTCGAGGATTGCGGCACTGAAAATCATATTCGTAATGAAAATTTTCGAA</left_flank>
        <right_flank>AAGGATTATAGCTCACCTGTAAACGGCAGCGGTAGCTCCGACGCGTCCAC</right_flank>
        <qual_score>145</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCTGGGTTTAAAAAAGTTTAAAGTGAAAAAATGAGACAGAAGAGAATGAATTAAAATGAGGCAGTGTCAAATAAATTTAACGCCTAGTGGGGGAGAGTATTAATCTGGATGAAATTGGGAAGATATTAATTAGATTATTCGAGTTGGTTGTATTTCTTATTGGGGTCCTTGGCCTGGTGCTCCGGCTGCCTTCTGTCCTGGGACTGGTGCTCCTTTCTTGTTCATGAGATAACGATGAATGTGTGGGATGACTCCTGTAAAAAAAAAACAAAAGAATAAAATCTTATTAATTTCTGAGTTTACCTCCTCCAGCGATGGTTGCCTTGATGAGAGTATCGAGCTCTTCGTCTCCACGAATAGCGAGATGAAGATGTCTTGGGGTAATACGCTTCACCTTGAGATCTTTGGAGGCGTTACCTGCCAATTCGAGGACTTCGGCGGTAAGATACTCGAGGATTGCGGCACTGAAAATCATATTCGTAATGAAAATTTTCGAAGAAGGATTATAGCTCACCTGTAAACGGCAGCGGTAGCTCCGACGCGTCCACTGGAAGTAGTTCTCTGCTTCAGGAAACGGTGAATACGTCCGACTGGAAACTGGAGTCCAGCGCGAGCGCTTCTCGAGACGACTTTCGACTTGGACTTTCCGGAGTCCTTTCCGGCCTTTCCTTTTCCTCCTGCCATTGTAGACGTGGAGTAGCTGTAAAAAAGGTAAAATAACAAACGGTACCGAATATTATAATAACAATAGAGTGCTAAGATTTCAAATGTACATTGTGAAATTTAAACCAAATACGGTAACGAACATCTCCGATGTTTATAATTTCGGAAAAACAAGATGCACAAAATACTTATTATTGAAATTAACTTGATAAAACAGATTGATTAGCCTTATTTATTCAAATGACGAAGTGAACGTTCAAAATGCTCAAAAGCGCGCGCAAACGACAGTCTCCTCCCTCTTGGCACAGTGCCAAGAAGTAAGATACGCGCGGGGT</canonical>
            <polymorphic>TATCTGGGTTTAAAAAAGTTTAAAGTGAAAAAATGAGACAGAAGAGAATGAATTAAAATGAGGCAGTGTCAAATAAATTTAACGCCTAGTGGGGGAGAGTATTAATCTGGATGAAATTGGGAAGATATTAATTAGATTATTCGAGTTGGTTGTATTTCTTATTGGGGTCCTTGGCCTGGTGCTCCGGCTGCCTTCTGTCCTGGGACTGGTGCTCCTTTCTTGTTCATGAGATAACGATGAATGTGTGGGATGACTCCTGTAAAAAAAAAACAAAAGAATAAAATCTTATTAATTTCTGAGTTTACCTCCTCCAGCGATGGTTGCCTTGATGAGAGTATCGAGCTCTTCGTCTCCACGAATAGCGAGATGAAGATGTCTTGGGGTAATACGCTTCACCTTGAGATCTTTGGAGGCGTTACCTGCCAATTCGAGGACTTCGGCGGTAAGATACTCGAGGATTGCGGCACTGAAAATCATATTCGTAATGAAAATTTTCGAARAAGGATTATAGCTCACCTGTAAACGGCAGCGGTAGCTCCGACGCGTCCACTGGAAGTAGTTCTCTGCTTCAGGAAACGGTGAATACGTCCGACTGGAAACTGGAGTCCAGCGCGAGCGCTTCTCGAGACGACTTTCGACTTGGACTTTCCGGAGTCCTTTCCGGCCTTTCCTTTTCCTCCTGCCATTGTAGACGTGGAGTAGCTGTAAAAAAGGTAAAATAACAAACGGTACCGAATATTATAATAACAATAGAGTGCTAAGATTTCAAATGTACATTGTGAAATTTAAACCAAATACGGTAACGAACATCTCCGATGTTTATAATTTCGGAAAAACAAGATGCACAAAATACTTATTATTGAAATTAACTTGATAAAACAGATTGATTAGCCTTATTTATTCAAATGACGAAGTGAACGTTCAAAATGCTCAAAAGCGCGCGCAAACGACAGTCTCCTCCCTCTTGGCACAGTGCCAAGAAGTAAGATACGCGCGGGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTGCCTTGATGAGAGTATC</pcr_primer_p1>
		<pcr_primer_p2>AAGCAGAGAACTACTTCCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGTTGCCTTGATGAGAGTATCGAGCTCTTCGTCTCCACGAATAGCGAGATGAAGATGTCTTGGGGTAATACGCTTCACCTTGAGATCTTTGGAGGCGTTACCTGCCAATTCGAGGACTTCGGCGGTAAGATACTCGAGGATTGCGGCACTGAAAATCATATTCGTAATGAAAATTTTCGAAGAAGGATTATAGCTCACCTGTAAACGGCAGCGGTAGCTCCGACGCGTCCACTGGAAGTAGTTCTCTGCTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTGCCTTGATGAGAGTATCGAGCTCTTCGTCTCCACGAATAGCGAGATGAAGATGTCTTGGGGTAATACGCTTCACCTTGAGATCTTTGGAGGCGTTACCTGCCAATTCGAGGACTTCGGCGGTAAGATACTCGAGGATTGCGGCACTGAAAATCATATTCGTAATGAAAATTTTCGAARAAGGATTATAGCTCACCTGTAAACGGCAGCGGTAGCTCCGACGCGTCCACTGGAAGTAGTTCTCTGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13786</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>555115</contig_pos>
        <strand>+</strand>
        <context>TTATAATAAC[A/G]ATAGAGTGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAGCTGTAAAAAAGGTAAAATAACAAACGGTACCGAATATTATAATAAC</left_flank>
        <right_flank>ATAGAGTGCTAAGATTTCAAATGTACATTGTGAAATTTAAACCAAATACG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGACTCCTGTAAAAAAAAAACAAAAGAATAAAATCTTATTAATTTCTGAGTTTACCTCCTCCAGCGATGGTTGCCTTGATGAGAGTATCGAGCTCTTCGTCTCCACGAATAGCGAGATGAAGATGTCTTGGGGTAATACGCTTCACCTTGAGATCTTTGGAGGCGTTACCTGCCAATTCGAGGACTTCGGCGGTAAGATACTCGAGGATTGCGGCACTGAAAATCATATTCGTAATGAAAATTTTCGAAGAAGGATTATAGCTCACCTGTAAACGGCAGCGGTAGCTCCGACGCGTCCACTGGAAGTAGTTCTCTGCTTCAGGAAACGGTGAATACGTCCGACTGGAAACTGGAGTCCAGCGCGAGCGCTTCTCGAGACGACTTTCGACTTGGACTTTCCGGAGTCCTTTCCGGCCTTTCCTTTTCCTCCTGCCATTGTAGACGTGGAGTAGCTGTAAAAAAGGTAAAATAACAAACGGTACCGAATATTATAATAACAATAGAGTGCTAAGATTTCAAATGTACATTGTGAAATTTAAACCAAATACGGTAACGAACATCTCCGATGTTTATAATTTCGGAAAAACAAGATGCACAAAATACTTATTATTGAAATTAACTTGATAAAACAGATTGATTAGCCTTATTTATTCAAATGACGAAGTGAACGTTCAAAATGCTCAAAAGCGCGCGCAAACGACAGTCTCCTCCCTCTTGGCACAGTGCCAAGAAGTAAGATACGCGCGGGGTTTCGCAGCGAGAGAGGTACTGTGGTTTGTGTGGATTTACGGGAGCGTTTTCGCTTTTTTTAGCGCGCGAATTATCAAATACTGGAGTTGGTACAAAAATAAAGCTAAGGGGATTTTACAAATACATTATTGTATCGGAATAAATGGCATCACAATCTGATCCAAATGATATCTTTTCGAAGCCGTAAGTGCACTGTTTCAAGAGATTATCACAAGGTTTCCTTTACAGAATAGTCCGAAGGCGTTTCCA</canonical>
            <polymorphic>ATGACTCCTGTAAAAAAAAAACAAAAGAATAAAATCTTATTAATTTCTGAGTTTACCTCCTCCAGCGATGGTTGCCTTGATGAGAGTATCGAGCTCTTCGTCTCCACGAATAGCGAGATGAAGATGTCTTGGGGTAATACGCTTCACCTTGAGATCTTTGGAGGCGTTACCTGCCAATTCGAGGACTTCGGCGGTAAGATACTCGAGGATTGCGGCACTGAAAATCATATTCGTAATGAAAATTTTCGAAGAAGGATTATAGCTCACCTGTAAACGGCAGCGGTAGCTCCGACGCGTCCACTGGAAGTAGTTCTCTGCTTCAGGAAACGGTGAATACGTCCGACTGGAAACTGGAGTCCAGCGCGAGCGCTTCTCGAGACGACTTTCGACTTGGACTTTCCGGAGTCCTTTCCGGCCTTTCCTTTTCCTCCTGCCATTGTAGACGTGGAGTAGCTGTAAAAAAGGTAAAATAACAAACGGTACCGAATATTATAATAACRATAGAGTGCTAAGATTTCAAATGTACATTGTGAAATTTAAACCAAATACGGTAACGAACATCTCCGATGTTTATAATTTCGGAAAAACAAGATGCACAAAATACTTATTATTGAAATTAACTTGATAAAACAGATTGATTAGCCTTATTTATTCAAATGACGAAGTGAACGTTCAAAATGCTCAAAAGCGCGCGCAAACGACAGTCTCCTCCCTCTTGGCACAGTGCCAAGAAGTAAGATACGCGCGGGGTTTCGCAGCGAGAGAGGTACTGTGGTTTGTGTGGATTTACGGGAGCGTTTTCGCTTTTTTTAGCGCGCGAATTATCAAATACTGGAGTTGGTACAAAAATAAAGCTAAGGGGATTTTACAAATACATTATTGTATCGGAATAAATGGCATCACAATCTGATCCAAATGATATCTTTTCGAAGCCGTAAGTGCACTGTTTCAAGAGATTATCACAAGGTTTCCTTTACAGAATAGTCCGAAGGCGTTTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGTAGACGTGGAGTAGCTGTA</pcr_primer_p1>
		<pcr_primer_p2>GTTCACTTCGTCATTTGAATAAA</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>ATTGTAGACGTGGAGTAGCTGTAAAAAAGGTAAAATAACAAACGGTACCGAATATTATAATAACAATAGAGTGCTAAGATTTCAAATGTACATTGTGAAATTTAAACCAAATACGGTAACGAACATCTCCGATGTTTATAATTTCGGAAAAACAAGATGCACAAAATACTTATTATTGAAATTAACTTGATAAAACAGATTGATTAGCCTTATTTATTCAAATGACGAAGTGAAC</canonical_amplicon>
		<polymorphic_amplicon>ATTGTAGACGTGGAGTAGCTGTAAAAAAGGTAAAATAACAAACGGTACCGAATATTATAATAACRATAGAGTGCTAAGATTTCAAATGTACATTGTGAAATTTAAACCAAATACGGTAACGAACATCTCCGATGTTTATAATTTCGGAAAAACAAGATGCACAAAATACTTATTATTGAAATTAACTTGATAAAACAGATTGATTAGCCTTATTTATTCAAATGACGAAGTGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13788</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>661599</contig_pos>
        <strand>+</strand>
        <context>TTCAATTTTC[C/T]AATTATTAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAAGATATTTTGATATTTTTGGCTCTGCTTTCTGGGGTTTTCAATTTTC</left_flank>
        <right_flank>AATTATTAAAGTGACATCAGAATTTCAGTCCCACTTCTTTCAGCTATTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAACTCCAAATAATTAGAGTGGTAGAAATCCAAATATGCGACGAAATCCCCGAAAAGTGCTGTTGAAAGTGAAAATTTTGCTTTTAAAAAATAAAAAAACATTTTTTCTTTAAAAAAAATAGGGACGAAGATAATTTCGCGGCCGTGACCTATATTTCTCACTGTGCGGGAACTCAAATCCTCGTCCCTATTCGCAACCATTTTTTTTTAATTTTCAACTGCGTTTTTCGAGGATTTATTTTTTTTTCCTGATTTTTTTCTCACTAATATTCTGAAAATATATAACTTTGGGAACATTTTGATGCAGAAAAATTTAAAAAAAAATTTTTTTTGGTCGGAATCCCCCTTCGAAACTATTTTCAAAGATAGAATCAGAGAAAAACTTCAAGATCTGATAATCAAAAAATATGCGCACTGCGCTCTGATAAATTATTTCTGCTTGAATTGATAAGATATTTTGATATTTTTGGCTCTGCTTTCTGGGGTTTTCAATTTTCTAATTATTAAAGTGACATCAGAATTTCAGTCCCACTTCTTTCAGCTATTTTTTTCGGTCTAATGATTCCCAAACGTTCCGAAAATAAGTTTTTTCAATCCATGTCTCTATTCCCCATCTGAATGCTTTTGCAGAATCTCGATTTCAAGATATTTATAGGACGGAGAAAAACCACGAGGCAGTTGACCCCAAAAACACGTTGCTGCTTCTTGACATGTTTCAATTCCGAAATGGGGAAAAAGCCATAAACAAGGGGCTCACACAAAATTCCAAATGAAGTTAGAAAAAAGAAAGGCAACTAGAACTTTGACCACGAAAAATAAATGGGCCCAAAAGTATAAAAAACTAGGGGGCAACACGAATTCTCATGCATCCGAAATGAAGAGGAATCTTCTTGAAGATCTAAAAATGTTCCTATTTTCAGAACACATCATGAAAAATCAATGGTTGTTTATTAGTAGTATTCAGGTGTAGTGTCGGAGGAAAGAAGAAAGAGAAGCGA</canonical>
            <polymorphic>AAAAACTCCAAATAATTAGAGTGGTAGAAATCCAAATATGCGACGAAATCCCCGAAAAGTGCTGTTGAAAGTGAAAATTTTGCTTTTAAAAAATAAAAAAACATTTTTTCTTTAAAAAAAATAGGGACGAAGATAATTTCGCGGCCGTGACCTATATTTCTCACTGTGCGGGAACTCAAATCCTCGTCCCTATTCGCAACCATTTTTTTTTAATTTTCAACTGCGTTTTTCGAGGATTTATTTTTTTTTCCTGATTTTTTTCTCACTAATATTCTGAAAATATATAACTTTGGGAACATTTTGATGCAGAAAAATTTAAAAAAAAATTTTTTTTGGTCGGAATCCCCCTTCGAAACTATTTTCAAAGATAGAATCAGAGAAAAACTTCAAGATCTGATAATCAAAAAATATGCGCACTGCGCTCTGATAAATTATTTCTGCTTGAATTGATAAGATATTTTGATATTTTTGGCTCTGCTTTCTGGGGTTTTCAATTTTCYAATTATTAAAGTGACATCAGAATTTCAGTCCCACTTCTTTCAGCTATTTTTTTCGGTCTAATGATTCCCAAACGTTCCGAAAATAAGTTTTTTCAATCCATGTCTCTATTCCCCATCTGAATGCTTTTGCAGAATCTCGATTTCAAGATATTTATAGGACGGAGAAAAACCACGAGGCAGTTGACCCCAAAAACACGTTGCTGCTTCTTGACATGTTTCAATTCCGAAATGGGGAAAAAGCCATAAACAAGGGGCTCACACAAAATTCCAAATGAAGTTAGAAAAAAGAAAGGCAACTAGAACTTTGACCACGAAAAATAAATGGGCCCAAAAGTATAAAAAACTAGGGGGCAACACGAATTCTCATGCATCCGAAATGAAGAGGAATCTTCTTGAAGATCTAAAAATGTTCCTATTTTCAGAACACATCATGAAAAATCAATGGTTGTTTATTAGTAGTATTCAGGTGTAGTGTCGGAGGAAAGAAGAAAGAGAAGCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAGATAGAATCAGAGAAAAACT</pcr_primer_p1>
		<pcr_primer_p2>GAATAGAGACATGGATTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAAAGATAGAATCAGAGAAAAACTTCAAGATCTGATAATCAAAAAATATGCGCACTGCGCTCTGATAAATTATTTCTGCTTGAATTGATAAGATATTTTGATATTTTTGGCTCTGCTTTCTGGGGTTTTCAATTTTCTAATTATTAAAGTGACATCAGAATTTCAGTCCCACTTCTTTCAGCTATTTTTTTCGGTCTAATGATTCCCAAACGTTCCGAAAATAAGTTTTTTCAATCCATGTCTCTATTC</canonical_amplicon>
		<polymorphic_amplicon>TCAAAGATAGAATCAGAGAAAAACTTCAAGATCTGATAATCAAAAAATATGCGCACTGCGCTCTGATAAATTATTTCTGCTTGAATTGATAAGATATTTTGATATTTTTGGCTCTGCTTTCTGGGGTTTTCAATTTTCYAATTATTAAAGTGACATCAGAATTTCAGTCCCACTTCTTTCAGCTATTTTTTTCGGTCTAATGATTCCCAAACGTTCCGAAAATAAGTTTTTTCAATCCATGTCTCTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13789</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>663654</contig_pos>
        <strand>+</strand>
        <context>CAAGGGATTT[G/T]AAAAAAATGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGAAGTAAGAAAAAATATACGGAAAAGTGGTTTGAAGAGGCAAGGGATTT</left_flank>
        <right_flank>AAAAAAATGGTTCCCACAGAATCTCGAGTTACCAAATATCTGCGAGCAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCAATGCACTCGTCATTGTTTTGTGCCAGTGGTGATGATTGAAATGAGAATGATGAGGTTGGTGGGGAGGAAGTTGAGATAACGATGGGGACAAAGTGATGGATGAAGTGGTAGTGGGGGTGGAAGCAGAGTGCGATCGGTGATGCAATGGAATCGGACGATGGGCGGTCAGGTGGTGGAACCAAGGAGGAGATGAACACCGTGTGGAAGTGCTTGATGATACTTTAAACTCCATTTCACACGAGAGAGGGACTCCTGCAAAGATTGATGGACTTTTTGAATTTTTAGTGGTCTCGAGAAATTGGCAAGAGCCAAAGAGATGAATAGACAAGACAAAATGTGGTTTTAAAGAACAAGGAATTGGATGATGGATTATATAATTTTTGAGATGAACAAAATTGAAAAAAAATACTACAAAATCTGTCTAAATAAATGAATTGTAAGGATGGAAGTAAGAAAAAATATACGGAAAAGTGGTTTGAAGAGGCAAGGGATTTTAAAAAAATGGTTCCCACAGAATCTCGAGTTACCAAATATCTGCGAGCAAAGTACTGAAATAAGAGTTTTTGGTCCTTCATTAACAATCATCTTGAGAGGTACTGTAGTTTGACATACCGTATTTACTCCAATAGAAGCTCACCCAAGCCGTCAACTTTGAGCTTAATTATCTTGATTCCTGTAAAAGATATTGAACATCTATCAACTTTTAAAATATTGACGATCTTGTGATAAACAATTTATCAGTGGAAATGTTCTTGATATCTTTGGGAGGATCCGAGATAATTGAGCTCAAGAAGGTGGGCTTCTACCAGAGCACAAACGGTAAGAGCGGCTGTGGTTTGTTAGTTTTTGTAAGGTCTCGGATATTTAGGAAAGGGAAAAAATACAAAAAATAGAATTCAATGTATACTTCAGCTTTACACCTGTGTGAGCTTGTGAAAAAATGACTCTATTGAACGTTTTTGAAGATGGGAACTCGAAAAAATCTTGAATAACAA</canonical>
            <polymorphic>TTCCAATGCACTCGTCATTGTTTTGTGCCAGTGGTGATGATTGAAATGAGAATGATGAGGTTGGTGGGGAGGAAGTTGAGATAACGATGGGGACAAAGTGATGGATGAAGTGGTAGTGGGGGTGGAAGCAGAGTGCGATCGGTGATGCAATGGAATCGGACGATGGGCGGTCAGGTGGTGGAACCAAGGAGGAGATGAACACCGTGTGGAAGTGCTTGATGATACTTTAAACTCCATTTCACACGAGAGAGGGACTCCTGCAAAGATTGATGGACTTTTTGAATTTTTAGTGGTCTCGAGAAATTGGCAAGAGCCAAAGAGATGAATAGACAAGACAAAATGTGGTTTTAAAGAACAAGGAATTGGATGATGGATTATATAATTTTTGAGATGAACAAAATTGAAAAAAAATACTACAAAATCTGTCTAAATAAATGAATTGTAAGGATGGAAGTAAGAAAAAATATACGGAAAAGTGGTTTGAAGAGGCAAGGGATTTKAAAAAAATGGTTCCCACAGAATCTCGAGTTACCAAATATCTGCGAGCAAAGTACTGAAATAAGAGTTTTTGGTCCTTCATTAACAATCATCTTGAGAGGTACTGTAGTTTGACATACCGTATTTACTCCAATAGAAGCTCACCCAAGCCGTCAACTTTGAGCTTAATTATCTTGATTCCTGTAAAAGATATTGAACATCTATCAACTTTTAAAATATTGACGATCTTGTGATAAACAATTTATCAGTGGAAATGTTCTTGATATCTTTGGGAGGATCCGAGATAATTGAGCTCAAGAAGGTGGGCTTCTACCAGAGCACAAACGGTAAGAGCGGCTGTGGTTTGTTAGTTTTTGTAAGGTCTCGGATATTTAGGAAAGGGAAAAAATACAAAAAATAGAATTCAATGTATACTTCAGCTTTACACCTGTGTGAGCTTGTGAAAAAATGACTCTATTGAACGTTTTTGAAGATGGGAACTCGAAAAAATCTTGAATAACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>290 228 210 151 121</canonical_bands>
                <polymorphic_bands>361 290 228 121</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>291 227 151 121 83 81 46</canonical_bands>
                <polymorphic_bands>291 232 227 121 83 46</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACAAAATGTGGTTTTAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>AATGAAGGACCAAAAACTCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGACAAAATGTGGTTTTAAAGAACAAGGAATTGGATGATGGATTATATAATTTTTGAGATGAACAAAATTGAAAAAAAATACTACAAAATCTGTCTAAATAAATGAATTGTAAGGATGGAAGTAAGAAAAAATATACGGAAAAGTGGTTTGAAGAGGCAAGGGATTTTAAAAAAATGGTTCCCACAGAATCTCGAGTTACCAAATATCTGCGAGCAAAGTACTGAAATAAGAGTTTTTGGTCCTTCATT</canonical_amplicon>
		<polymorphic_amplicon>AGACAAAATGTGGTTTTAAAGAACAAGGAATTGGATGATGGATTATATAATTTTTGAGATGAACAAAATTGAAAAAAAATACTACAAAATCTGTCTAAATAAATGAATTGTAAGGATGGAAGTAAGAAAAAATATACGGAAAAGTGGTTTGAAGAGGCAAGGGATTTKAAAAAAATGGTTCCCACAGAATCTCGAGTTACCAAATATCTGCGAGCAAAGTACTGAAATAAGAGTTTTTGGTCCTTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13790</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>663583</contig_pos>
        <strand></strand>
        <context>AAATCTGTCT[A/G]AATAAATGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAATTTTTGAGATGAACAAAATTGAAAAAAAATACTACAAAATCTGTCT</left_flank>
        <right_flank>AATAAATGAATTGTAAGGATGGAAGTAAGAAAAAATATACGGAAAAGTGG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATACAAATTCAAAAAAAAAGGACTCACCTCTTAGTAACCGATGTATTTCAGAAAGCGATGTCGTGCACTTTTCCAATGCACTCGTCATTGTTTTGTGCCAGTGGTGATGATTGAAATGAGAATGATGAGGTTGGTGGGGAGGAAGTTGAGATAACGATGGGGACAAAGTGATGGATGAAGTGGTAGTGGGGGTGGAAGCAGAGTGCGATCGGTGATGCAATGGAATCGGACGATGGGCGGTCAGGTGGTGGAACCAAGGAGGAGATGAACACCGTGTGGAAGTGCTTGATGATACTTTAAACTCCATTTCACACGAGAGAGGGACTCCTGCAAAGATTGATGGACTTTTTGAATTTTTAGTGGTCTCGAGAAATTGGCAAGAGCCAAAGAGATGAATAGACAAGACAAAATGTGGTTTTAAAGAACAAGGAATTGGATGATGGATTATATAATTTTTGAGATGAACAAAATTGAAAAAAAATACTACAAAATCTGTCTAAATAAATGAATTGTAAGGATGGAAGTAAGAAAAAATATACGGAAAAGTGGTTTGAAGAGGCAAGGGATTTTAAAAAAATGGTTCCCACAGAATCTCGAGTTACCAAATATCTGCGAGCAAAGTACTGAAATAAGAGTTTTTGGTCCTTCATTAACAATCATCTTGAGAGGTACTGTAGTTTGACATACCGTATTTACTCCAATAGAAGCTCACCCAAGCCGTCAACTTTGAGCTTAATTATCTTGATTCCTGTAAAAGATATTGAACATCTATCAACTTTTAAAATATTGACGATCTTGTGATAAACAATTTATCAGTGGAAATGTTCTTGATATCTTTGGGAGGATCCGAGATAATTGAGCTCAAGAAGGTGGGCTTCTACCAGAGCACAAACGGTAAGAGCGGCTGTGGTTTGTTAGTTTTTGTAAGGTCTCGGATATTTAGGAAAGGGAAAAAATACAAAAAATAGAATTCAATGTATACTTCAGCTTTACACCTGT</canonical>
            <polymorphic>AATACAAATTCAAAAAAAAAGGACTCACCTCTTAGTAACCGATGTATTTCAGAAAGCGATGTCGTGCACTTTTCCAATGCACTCGTCATTGTTTTGTGCCAGTGGTGATGATTGAAATGAGAATGATGAGGTTGGTGGGGAGGAAGTTGAGATAACGATGGGGACAAAGTGATGGATGAAGTGGTAGTGGGGGTGGAAGCAGAGTGCGATCGGTGATGCAATGGAATCGGACGATGGGCGGTCAGGTGGTGGAACCAAGGAGGAGATGAACACCGTGTGGAAGTGCTTGATGATACTTTAAACTCCATTTCACACGAGAGAGGGACTCCTGCAAAGATTGATGGACTTTTTGAATTTTTAGTGGTCTCGAGAAATTGGCAAGAGCCAAAGAGATGAATAGACAAGACAAAATGTGGTTTTAAAGAACAAGGAATTGGATGATGGATTATATAATTTTTGAGATGAACAAAATTGAAAAAAAATACTACAAAATCTGTCTRAATAAATGAATTGTAAGGATGGAAGTAAGAAAAAATATACGGAAAAGTGGTTTGAAGAGGCAAGGGATTTTAAAAAAATGGTTCCCACAGAATCTCGAGTTACCAAATATCTGCGAGCAAAGTACTGAAATAAGAGTTTTTGGTCCTTCATTAACAATCATCTTGAGAGGTACTGTAGTTTGACATACCGTATTTACTCCAATAGAAGCTCACCCAAGCCGTCAACTTTGAGCTTAATTATCTTGATTCCTGTAAAAGATATTGAACATCTATCAACTTTTAAAATATTGACGATCTTGTGATAAACAATTTATCAGTGGAAATGTTCTTGATATCTTTGGGAGGATCCGAGATAATTGAGCTCAAGAAGGTGGGCTTCTACCAGAGCACAAACGGTAAGAGCGGCTGTGGTTTGTTAGTTTTTGTAAGGTCTCGGATATTTAGGAAAGGGAAAAAATACAAAAAATAGAATTCAATGTATACTTCAGCTTTACACCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGACAAAATGTGGTTTTAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>AATGAAGGACCAAAAACTCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGACAAAATGTGGTTTTAAAGAACAAGGAATTGGATGATGGATTATATAATTTTTGAGATGAACAAAATTGAAAAAAAATACTACAAAATCTGTCTAAATAAATGAATTGTAAGGATGGAAGTAAGAAAAAATATACGGAAAAGTGGTTTGAAGAGGCAAGGGATTTTAAAAAAATGGTTCCCACAGAATCTCGAGTTACCAAATATCTGCGAGCAAAGTACTGAAATAAGAGTTTTTGGTCCTTCATT</canonical_amplicon>
		<polymorphic_amplicon>AGACAAAATGTGGTTTTAAAGAACAAGGAATTGGATGATGGATTATATAATTTTTGAGATGAACAAAATTGAAAAAAAATACTACAAAATCTGTCTRAATAAATGAATTGTAAGGATGGAAGTAAGAAAAAATATACGGAAAAGTGGTTTGAAGAGGCAAGGGATTTTAAAAAAATGGTTCCCACAGAATCTCGAGTTACCAAATATCTGCGAGCAAAGTACTGAAATAAGAGTTTTTGGTCCTTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13792</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>663466</contig_pos>
        <strand></strand>
        <context>AATTGGCAAG[A/C]GCCAAAGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAGATTGATGGACTTTTTGAATTTTTAGTGGTCTCGAGAAATTGGCAAG</left_flank>
        <right_flank>GCCAAAGAGATGAATAGACAAGACAAAATGTGGTTTTAAAGAACAAGGAA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATCTACGATTTTTTTTATTTTGAAAAAATGAGTTTCGTTCTAACAGAACAATAAATTATGCCTACCTCAAATGGAAATATTTCAAAAACAACATAGAACACTCCAGAGACATGTGAATACAAATTCAAAAAAAAAGGACTCACCTCTTAGTAACCGATGTATTTCAGAAAGCGATGTCGTGCACTTTTCCAATGCACTCGTCATTGTTTTGTGCCAGTGGTGATGATTGAAATGAGAATGATGAGGTTGGTGGGGAGGAAGTTGAGATAACGATGGGGACAAAGTGATGGATGAAGTGGTAGTGGGGGTGGAAGCAGAGTGCGATCGGTGATGCAATGGAATCGGACGATGGGCGGTCAGGTGGTGGAACCAAGGAGGAGATGAACACCGTGTGGAAGTGCTTGATGATACTTTAAACTCCATTTCACACGAGAGAGGGACTCCTGCAAAGATTGATGGACTTTTTGAATTTTTAGTGGTCTCGAGAAATTGGCAAGAGCCAAAGAGATGAATAGACAAGACAAAATGTGGTTTTAAAGAACAAGGAATTGGATGATGGATTATATAATTTTTGAGATGAACAAAATTGAAAAAAAATACTACAAAATCTGTCTAAATAAATGAATTGTAAGGATGGAAGTAAGAAAAAATATACGGAAAAGTGGTTTGAAGAGGCAAGGGATTTTAAAAAAATGGTTCCCACAGAATCTCGAGTTACCAAATATCTGCGAGCAAAGTACTGAAATAAGAGTTTTTGGTCCTTCATTAACAATCATCTTGAGAGGTACTGTAGTTTGACATACCGTATTTACTCCAATAGAAGCTCACCCAAGCCGTCAACTTTGAGCTTAATTATCTTGATTCCTGTAAAAGATATTGAACATCTATCAACTTTTAAAATATTGACGATCTTGTGATAAACAATTTATCAGTGGAAATGTTCTTGATATCTTTGGGAGGATCCGAGATAATTGAGCTCAAGAAGGTGGGCTTCTACC</canonical>
            <polymorphic>AAATCTACGATTTTTTTTATTTTGAAAAAATGAGTTTCGTTCTAACAGAACAATAAATTATGCCTACCTCAAATGGAAATATTTCAAAAACAACATAGAACACTCCAGAGACATGTGAATACAAATTCAAAAAAAAAGGACTCACCTCTTAGTAACCGATGTATTTCAGAAAGCGATGTCGTGCACTTTTCCAATGCACTCGTCATTGTTTTGTGCCAGTGGTGATGATTGAAATGAGAATGATGAGGTTGGTGGGGAGGAAGTTGAGATAACGATGGGGACAAAGTGATGGATGAAGTGGTAGTGGGGGTGGAAGCAGAGTGCGATCGGTGATGCAATGGAATCGGACGATGGGCGGTCAGGTGGTGGAACCAAGGAGGAGATGAACACCGTGTGGAAGTGCTTGATGATACTTTAAACTCCATTTCACACGAGAGAGGGACTCCTGCAAAGATTGATGGACTTTTTGAATTTTTAGTGGTCTCGAGAAATTGGCAAGMGCCAAAGAGATGAATAGACAAGACAAAATGTGGTTTTAAAGAACAAGGAATTGGATGATGGATTATATAATTTTTGAGATGAACAAAATTGAAAAAAAATACTACAAAATCTGTCTAAATAAATGAATTGTAAGGATGGAAGTAAGAAAAAATATACGGAAAAGTGGTTTGAAGAGGCAAGGGATTTTAAAAAAATGGTTCCCACAGAATCTCGAGTTACCAAATATCTGCGAGCAAAGTACTGAAATAAGAGTTTTTGGTCCTTCATTAACAATCATCTTGAGAGGTACTGTAGTTTGACATACCGTATTTACTCCAATAGAAGCTCACCCAAGCCGTCAACTTTGAGCTTAATTATCTTGATTCCTGTAAAAGATATTGAACATCTATCAACTTTTAAAATATTGACGATCTTGTGATAAACAATTTATCAGTGGAAATGTTCTTGATATCTTTGGGAGGATCCGAGATAATTGAGCTCAAGAAGGTGGGCTTCTACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>501 324 129 14 14 10 8</canonical_bands>
                <polymorphic_bands>825 129 14 14 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCTTGATGATACTTTAAACTCC</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTTACTTCCATCCTTACAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGCTTGATGATACTTTAAACTCCATTTCACACGAGAGAGGGACTCCTGCAAAGATTGATGGACTTTTTGAATTTTTAGTGGTCTCGAGAAATTGGCAAGAGCCAAAGAGATGAATAGACAAGACAAAATGTGGTTTTAAAGAACAAGGAATTGGATGATGGATTATATAATTTTTGAGATGAACAAAATTGAAAAAAAATACTACAAAATCTGTCTAAATAAATGAATTGTAAGGATGGAAGTAAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGCTTGATGATACTTTAAACTCCATTTCACACGAGAGAGGGACTCCTGCAAAGATTGATGGACTTTTTGAATTTTTAGTGGTCTCGAGAAATTGGCAAGMGCCAAAGAGATGAATAGACAAGACAAAATGTGGTTTTAAAGAACAAGGAATTGGATGATGGATTATATAATTTTTGAGATGAACAAAATTGAAAAAAAATACTACAAAATCTGTCTAAATAAATGAATTGTAAGGATGGAAGTAAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13793</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>687589</contig_pos>
        <strand>+</strand>
        <context>cataaCATGC[C/T]GCCAACGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTTTTTCTATTCCACAGCTCCGATTTTTTCAATACCAGCATAACATGC</left_flank>
        <right_flank>GCCAACGATTCCCACTTTTCAGCAATTAGATATTACTGCTCCTCGACCCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAGAGGATAATGAAGAAGGAATGATCGATATCGAATTTGAGGTAATTTCTCATTTCTGGAAAAAAAAGTAAGGTTTCGAACTAAAACAACAAGACAGAAAAGAGACGCAGTGATGTTAGTTTACTACATTGCAAAAGTGGGAAACCAACGTTTGTGGGGGCAACGAACTGAAAGTTGTTATTGAAAATTCAAAAAAAAACTATGATTAATACAGGTTATTATGATGGTATGCAAAAATCGGTACTATGGAAGAGAACATCTGTTGGTCGCGATTTGAAATTTGGCACCGAGCCAATTTTGGACGCGTCGCGTGTCAGCATTGCGGCTTTTAGCTGAAATGAGAAGCGTGACGGAGGACACTTTCTCTAGGTGCCAGTTAGCGATGTCGTAAAAGTTTTCAACACGAAAATTGTCGAAAAGCAATAGTAAAAAAACGCACCGAAAACAATCTTTTTCTATTCCACAGCTCCGATTTTTTCAATACCAGCATAACATGCTGCCAACGATTCCCACTTTTCAGCAATTAGATATTACTGCTCCTCGACCCGACTTCCTATCTTTACAATTCGACGTAGTTCTTGACAAGGGAACATGGGATGCAATGAGCCTTTCAGAAGAACGTGGCGATCGGCTGAAGGCGTACACCGATCTTCTCGACAAAGTGCTCAATAAGAATGGTCGCTTCGTAGTCTTCTCCTGCAATTTTACTCTGTATGTCACTGTGTTTCTACAGAACTGATTCTTTTTACAGAATTTCTTTTCAGAAATGAGCTTCAAGAGCAATTTGGTGGTTCGATTCTGGAGATGGTGTGTGAAGTGCCAGCGACTCATAGCTTTTCTTTCGGTGGAAAACAAGGTGTCACTTCAACCGGTGTCGTCTTCCGGAAGAAGGCCTCATAAACATCTATTAGTTATTATTGTTGTTTTTGTTTCCTTATTTTCTTCTTCCTCGTTTCTCAGTTATATAATAAAAGTGTTTTCTTCCAAGTAGTCTCCAC</canonical>
            <polymorphic>AGAAGAGGATAATGAAGAAGGAATGATCGATATCGAATTTGAGGTAATTTCTCATTTCTGGAAAAAAAAGTAAGGTTTCGAACTAAAACAACAAGACAGAAAAGAGACGCAGTGATGTTAGTTTACTACATTGCAAAAGTGGGAAACCAACGTTTGTGGGGGCAACGAACTGAAAGTTGTTATTGAAAATTCAAAAAAAAACTATGATTAATACAGGTTATTATGATGGTATGCAAAAATCGGTACTATGGAAGAGAACATCTGTTGGTCGCGATTTGAAATTTGGCACCGAGCCAATTTTGGACGCGTCGCGTGTCAGCATTGCGGCTTTTAGCTGAAATGAGAAGCGTGACGGAGGACACTTTCTCTAGGTGCCAGTTAGCGATGTCGTAAAAGTTTTCAACACGAAAATTGTCGAAAAGCAATAGTAAAAAAACGCACCGAAAACAATCTTTTTCTATTCCACAGCTCCGATTTTTTCAATACCAGCATAACATGCYGCCAACGATTCCCACTTTTCAGCAATTAGATATTACTGCTCCTCGACCCGACTTCCTATCTTTACAATTCGACGTAGTTCTTGACAAGGGAACATGGGATGCAATGAGCCTTTCAGAAGAACGTGGCGATCGGCTGAAGGCGTACACCGATCTTCTCGACAAAGTGCTCAATAAGAATGGTCGCTTCGTAGTCTTCTCCTGCAATTTTACTCTGTATGTCACTGTGTTTCTACAGAACTGATTCTTTTTACAGAATTTCTTTTCAGAAATGAGCTTCAAGAGCAATTTGGTGGTTCGATTCTGGAGATGGTGTGTGAAGTGCCAGCGACTCATAGCTTTTCTTTCGGTGGAAAACAAGGTGTCACTTCAACCGGTGTCGTCTTCCGGAAGAAGGCCTCATAAACATCTATTAGTTATTATTGTTGTTTTTGTTTCCTTATTTTCTTCTTCCTCGTTTCTCAGTTATATAATAAAAGTGTTTTCTTCCAAGTAGTCTCCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACACTTTCTCTAGGTGCCAGT</pcr_primer_p1>
		<pcr_primer_p2>ATGTTCCCTTGTCAAGAACTAC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>ACACTTTCTCTAGGTGCCAGTTAGCGATGTCGTAAAAGTTTTCAACACGAAAATTGTCGAAAAGCAATAGTAAAAAAACGCACCGAAAACAATCTTTTTCTATTCCACAGCTCCGATTTTTTCAATACCAGCATAACATGCTGCCAACGATTCCCACTTTTCAGCAATTAGATATTACTGCTCCTCGACCCGACTTCCTATCTTTACAATTCGACGTAGTTCTTGACAAGGGAACAT</canonical_amplicon>
		<polymorphic_amplicon>ACACTTTCTCTAGGTGCCAGTTAGCGATGTCGTAAAAGTTTTCAACACGAAAATTGTCGAAAAGCAATAGTAAAAAAACGCACCGAAAACAATCTTTTTCTATTCCACAGCTCCGATTTTTTCAATACCAGCATAACATGCYGCCAACGATTCCCACTTTTCAGCAATTAGATATTACTGCTCCTCGACCCGACTTCCTATCTTTACAATTCGACGTAGTTCTTGACAAGGGAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13835</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>731187</contig_pos>
        <strand>+</strand>
        <context>GTGGAAAATA[C/T]YTAAAGGAGa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGAACGGCTTCTCAAATTTCGACGAAAAAATGAAAGAAGTGGAAAATA</left_flank>
        <right_flank>CTAAAGGAGAAAAACTGTGCGGCAAAACCGTGCCCAGCTTACAATTAGGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCTTTGGCAGCATTTTTGTATCCTCCGAAAGCTTGGAAAATAGATCCTCCAACCAGACCCATTGCAAAAGCTGATCCGATGTCATCTCCGATACGATATGGGCTGAAACCTTTTTTTTTAAGATCAATAAAATCACTAGACATTCAGTTAACTCCATACCATGGCTCTCTGGTGTACTCTTCCATTTCTGTGTATTGGTGTTCCCTGGAAATAGAAAAAATTAGTGAAAATTTTTCTATGACGTCGAACTAGAAAAATTGACTCGACAATGTATTTTTTCAAATTAATAAAACGACTTAAAATTAGAGAGAACCATCAAAAATCCCACAGAAACTCGGAAAGCTCCTGAAAAAAGCACGAGGATTGCGCCATCACGCAATTCTTCACACAAATGCGTCAGCAGTCAGCAAAGCGCAAGTTGAAGTCGGAATAACGGAGCATCGTTTGAAAGAACGGCTTCTCAAATTTCGACGAAAAAATGAAAGAAGTGGAAAATACCTAAAGGAGAAAAACTGTGCGGCAAAACCGTGCCCAGCTTACAATTAGGCTCTCACTTTCCGGAAAAAATTTGTCCTCGGATTTGAGAAGCTTCGACGGAAAGTGTGATATGCTGTAGGCTCTTCTGGAATAACTTTTGGCGATGAATAACAAAACTATCCTGAAAGCCGGAAACATTGAATCAAAAATAATGAAAAACATTCATTCGAGCAGAGAAAATGATTGAAGGAGCTACAAAACCTTTTAATAGGTCAAGATCTCCGAGTTTGATTATATGCGCTGAATAAGTATTCAGTTTCAAGAATATTTATATTTTCCGGACGGTCTTAAATATTCATTAATCAATTATCAATAAAAAAAAATTAAGAGCAGTGTGTACAACAAAATAAGAAAGAAACCATGAAAAGACGATGCTGAAGACGAAGTATTGATAAATGGATAGAAAAAGTCATAAGGAAGACGAATATCAATATAAGGCAGAGCTGCGAAAACATGTCTCG</canonical>
            <polymorphic>TTCCTTTGGCAGCATTTTTGTATCCTCCGAAAGCTTGGAAAATAGATCCTCCAACCAGACCCATTGCAAAAGCTGATCCGATGTCATCTCCGATACGATATGGGCTGAAACCTTTTTTTTTAAGATCAATAAAATCACTAGACATTCAGTTAACTCCATACCATGGCTCTCTGGTGTACTCTTCCATTTCTGTGTATTGGTGTTCCCTGGAAATAGAAAAAATTAGTGAAAATTTTTCTATGACGTCGAACTAGAAAAATTGACTCGACAATGTATTTTTTCAAATTAATAAAACGACTTAAAATTAGAGAGAACCATCAAAAATCCCACAGAAACTCGGAAAGCTCCTGAAAAAAGCACGAGGATTGCGCCATCACGCAATTCTTCACACAAATGCGTCAGCAGTCAGCAAAGCGCAAGTTGAAGTCGGAATAACGGAGCATCGTTTGAAAGAACGGCTTCTCAAATTTCGACGAAAAAATGAAAGAAGTGGAAAATAYCTAAAGGAGAAAAACTGTGCGGCAAAACCGTGCCCAGCTTACAATTAGGCTCTCACTTTCCGGAAAAAATTTGTCCTCGGATTTGAGAAGCTTCGACGGAAAGTGTGATATGCTGTAGGCTCTTCTGGAATAACTTTTGGCGATGAATAACAAAACTATCCTGAAAGCCGGAAACATTGAATCAAAAATAATGAAAAACATTCATTCGAGCAGAGAAAATGATTGAAGGAGCTACAAAACCTTTTAATAGGTCAAGATCTCCGAGTTTGATTATATGCGCTGAATAAGTATTCAGTTTCAAGAATATTTATATTTTCCGGACGGTCTTAAATATTCATTAATCAATTATCAATAAAAAAAAATTAAGAGCAGTGTGTACAACAAAATAAGAAAGAAACCATGAAAAGACGATGCTGAAGACGAAGTATTGATAAATGGATAGAAAAAGTCATAAGGAAGACGAATATCAATATAAGGCAGAGCTGCGAAAACATGTCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGCAATTCTTCACACAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGAAGAGCCTACAGCATATCAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACGCAATTCTTCACACAAATGCGTCAGCAGTCAGCAAAGCGCAAGTTGAAGTCGGAATAACGGAGCATCGTTTGAAAGAACGGCTTCTCAAATTTCGACGAAAAAATGAAAGAAGTGGAAAATACCTAAAGGAGAAAAACTGTGCGGCAAAACCGTGCCCAGCTTACAATTAGGCTCTCACTTTCCGGAAAAAATTTGTCCTCGGATTTGAGAAGCTTCGACGGAAAGTGTGATATGCTGTAGGCTCTTCT</canonical_amplicon>
		<polymorphic_amplicon>ACGCAATTCTTCACACAAATGCGTCAGCAGTCAGCAAAGCGCAAGTTGAAGTCGGAATAACGGAGCATCGTTTGAAAGAACGGCTTCTCAAATTTCGACGAAAAAATGAAAGAAGTGGAAAATAYCTAAAGGAGAAAAACTGTGCGGCAAAACCGTGCCCAGCTTACAATTAGGCTCTCACTTTCCGGAAAAAATTTGTCCTCGGATTTGAGAAGCTTCGACGGAAAGTGTGATATGCTGTAGGCTCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13836</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>731188</contig_pos>
        <strand>+</strand>
        <context>TGGAAAATAY[C/T]TAAAGGAGaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGAACGGCTTCTCAAATTTCGACGAAAAAATGAAAGAAGTGGAAAATAC</left_flank>
        <right_flank>TAAAGGAGAAAAACTGTGCGGCAAAACCGTGCCCAGCTTACAATTAGGCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTTTGGCAGCATTTTTGTATCCTCCGAAAGCTTGGAAAATAGATCCTCCAACCAGACCCATTGCAAAAGCTGATCCGATGTCATCTCCGATACGATATGGGCTGAAACCTTTTTTTTTAAGATCAATAAAATCACTAGACATTCAGTTAACTCCATACCATGGCTCTCTGGTGTACTCTTCCATTTCTGTGTATTGGTGTTCCCTGGAAATAGAAAAAATTAGTGAAAATTTTTCTATGACGTCGAACTAGAAAAATTGACTCGACAATGTATTTTTTCAAATTAATAAAACGACTTAAAATTAGAGAGAACCATCAAAAATCCCACAGAAACTCGGAAAGCTCCTGAAAAAAGCACGAGGATTGCGCCATCACGCAATTCTTCACACAAATGCGTCAGCAGTCAGCAAAGCGCAAGTTGAAGTCGGAATAACGGAGCATCGTTTGAAAGAACGGCTTCTCAAATTTCGACGAAAAAATGAAAGAAGTGGAAAATACCTAAAGGAGAAAAACTGTGCGGCAAAACCGTGCCCAGCTTACAATTAGGCTCTCACTTTCCGGAAAAAATTTGTCCTCGGATTTGAGAAGCTTCGACGGAAAGTGTGATATGCTGTAGGCTCTTCTGGAATAACTTTTGGCGATGAATAACAAAACTATCCTGAAAGCCGGAAACATTGAATCAAAAATAATGAAAAACATTCATTCGAGCAGAGAAAATGATTGAAGGAGCTACAAAACCTTTTAATAGGTCAAGATCTCCGAGTTTGATTATATGCGCTGAATAAGTATTCAGTTTCAAGAATATTTATATTTTCCGGACGGTCTTAAATATTCATTAATCAATTATCAATAAAAAAAAATTAAGAGCAGTGTGTACAACAAAATAAGAAAGAAACCATGAAAAGACGATGCTGAAGACGAAGTATTGATAAATGGATAGAAAAAGTCATAAGGAAGACGAATATCAATATAAGGCAGAGCTGCGAAAACATGTCTCGG</canonical>
            <polymorphic>TCCTTTGGCAGCATTTTTGTATCCTCCGAAAGCTTGGAAAATAGATCCTCCAACCAGACCCATTGCAAAAGCTGATCCGATGTCATCTCCGATACGATATGGGCTGAAACCTTTTTTTTTAAGATCAATAAAATCACTAGACATTCAGTTAACTCCATACCATGGCTCTCTGGTGTACTCTTCCATTTCTGTGTATTGGTGTTCCCTGGAAATAGAAAAAATTAGTGAAAATTTTTCTATGACGTCGAACTAGAAAAATTGACTCGACAATGTATTTTTTCAAATTAATAAAACGACTTAAAATTAGAGAGAACCATCAAAAATCCCACAGAAACTCGGAAAGCTCCTGAAAAAAGCACGAGGATTGCGCCATCACGCAATTCTTCACACAAATGCGTCAGCAGTCAGCAAAGCGCAAGTTGAAGTCGGAATAACGGAGCATCGTTTGAAAGAACGGCTTCTCAAATTTCGACGAAAAAATGAAAGAAGTGGAAAATACYTAAAGGAGAAAAACTGTGCGGCAAAACCGTGCCCAGCTTACAATTAGGCTCTCACTTTCCGGAAAAAATTTGTCCTCGGATTTGAGAAGCTTCGACGGAAAGTGTGATATGCTGTAGGCTCTTCTGGAATAACTTTTGGCGATGAATAACAAAACTATCCTGAAAGCCGGAAACATTGAATCAAAAATAATGAAAAACATTCATTCGAGCAGAGAAAATGATTGAAGGAGCTACAAAACCTTTTAATAGGTCAAGATCTCCGAGTTTGATTATATGCGCTGAATAAGTATTCAGTTTCAAGAATATTTATATTTTCCGGACGGTCTTAAATATTCATTAATCAATTATCAATAAAAAAAAATTAAGAGCAGTGTGTACAACAAAATAAGAAAGAAACCATGAAAAGACGATGCTGAAGACGAAGTATTGATAAATGGATAGAAAAAGTCATAAGGAAGACGAATATCAATATAAGGCAGAGCTGCGAAAACATGTCTCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGCAATTCTTCACACAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGAAGAGCCTACAGCATATCAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACGCAATTCTTCACACAAATGCGTCAGCAGTCAGCAAAGCGCAAGTTGAAGTCGGAATAACGGAGCATCGTTTGAAAGAACGGCTTCTCAAATTTCGACGAAAAAATGAAAGAAGTGGAAAATACCTAAAGGAGAAAAACTGTGCGGCAAAACCGTGCCCAGCTTACAATTAGGCTCTCACTTTCCGGAAAAAATTTGTCCTCGGATTTGAGAAGCTTCGACGGAAAGTGTGATATGCTGTAGGCTCTTCT</canonical_amplicon>
		<polymorphic_amplicon>ACGCAATTCTTCACACAAATGCGTCAGCAGTCAGCAAAGCGCAAGTTGAAGTCGGAATAACGGAGCATCGTTTGAAAGAACGGCTTCTCAAATTTCGACGAAAAAATGAAAGAAGTGGAAAATACYTAAAGGAGAAAAACTGTGCGGCAAAACCGTGCCCAGCTTACAATTAGGCTCTCACTTTCCGGAAAAAATTTGTCCTCGGATTTGAGAAGCTTCGACGGAAAGTGTGATATGCTGTAGGCTCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13838</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>967211</contig_pos>
        <strand>+</strand>
        <context>GAGTTCATAA[A/T]TAGTCAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCTGCTCATTTGAATTTCTGAGTACGCGTTTTTTTCTATGAGTTCATAA</left_flank>
        <right_flank>TAGTCAAAAAGCTGAAAATAGAGAAGAAGAGGCAACTGAAACTTTGGTTA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCGTCAAATTTGAGCCTATGTATCTAATTTTCTGTGAGAGATATCAAAAAGTGGTTGACTAATAAAATATTGCTAATATTATGATAAACATTTTATCAGTTGACAACTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAACTGGACGGTCCGGGTGCCGTTCTATTAGAGTGTTTACGGTATATTTCGCAGAATCCGGAAAAAAAAAGATCTTTCGGAATCCCGAATCCGAACAACTCTGGTCCAAAGCAATTGTCTGGCTGATTGAAACTTGAAGGGGGTGGGTAGTGATACCCCTACAGTAATCCTTTCCAAAAAGCCATGTCAATCCTTTCACACTTCTACCAAGAAATCTGACGACAGAATGCCATTTTCTTCTATTTGCACGTTCTCTACACAATACAACGCATTTCTCCTTTATTTTCTGTAGACCAACTTTTTTCTGCTCATTTGAATTTCTGAGTACGCGTTTTTTTCTATGAGTTCATAATTAGTCAAAAAGCTGAAAATAGAGAAGAAGAGGCAACTGAAACTTTGGTTATCTGATCTCTTGTGTTAAGATTTTTGGATTTTTCCATGTCTGGATTACTGTAGGCGTGTCTGATTCATTACCGGGTGATCTGGTGATTTGCTTCAAATAATTATGAGTAACTGAAAAATGTACTAAAAATAAAAATGGGGGTGGGAAAGAATAGACTGAAATTGAGCTGTTTTCCTCTAAACGGTTTCTCGAGAATTCAGAAATTAAAACTACAAAAAATATGGAAGACTGGGAGTCTATCCACCTCCTCCTGTTCCTTGACACTACAAAATGAGGAGCACAAACTGACAACATCGTTTGATCATTAAAAGTATCATTTGGAGCGAAACTAGTGAAAAATTTGAATCAAAGTGTGAGAATTCTTAAGGAAATGAAGGTTTCACTGAACCGGAAATTTAAGTTGAAACTATTTTATGAGAAAGAACTTTTAGACTTTTGTGCATTCCCTTT</canonical>
            <polymorphic>GTCGTCAAATTTGAGCCTATGTATCTAATTTTCTGTGAGAGATATCAAAAAGTGGTTGACTAATAAAATATTGCTAATATTATGATAAACATTTTATCAGTTGACAACTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAACTGGACGGTCCGGGTGCCGTTCTATTAGAGTGTTTACGGTATATTTCGCAGAATCCGGAAAAAAAAAGATCTTTCGGAATCCCGAATCCGAACAACTCTGGTCCAAAGCAATTGTCTGGCTGATTGAAACTTGAAGGGGGTGGGTAGTGATACCCCTACAGTAATCCTTTCCAAAAAGCCATGTCAATCCTTTCACACTTCTACCAAGAAATCTGACGACAGAATGCCATTTTCTTCTATTTGCACGTTCTCTACACAATACAACGCATTTCTCCTTTATTTTCTGTAGACCAACTTTTTTCTGCTCATTTGAATTTCTGAGTACGCGTTTTTTTCTATGAGTTCATAAWTAGTCAAAAAGCTGAAAATAGAGAAGAAGAGGCAACTGAAACTTTGGTTATCTGATCTCTTGTGTTAAGATTTTTGGATTTTTCCATGTCTGGATTACTGTAGGCGTGTCTGATTCATTACCGGGTGATCTGGTGATTTGCTTCAAATAATTATGAGTAACTGAAAAATGTACTAAAAATAAAAATGGGGGTGGGAAAGAATAGACTGAAATTGAGCTGTTTTCCTCTAAACGGTTTCTCGAGAATTCAGAAATTAAAACTACAAAAAATATGGAAGACTGGGAGTCTATCCACCTCCTCCTGTTCCTTGACACTACAAAATGAGGAGCACAAACTGACAACATCGTTTGATCATTAAAAGTATCATTTGGAGCGAAACTAGTGAAAAATTTGAATCAAAGTGTGAGAATTCTTAAGGAAATGAAGGTTTCACTGAACCGGAAATTTAAGTTGAAACTATTTTATGAGAAAGAACTTTTAGACTTTTGTGCATTCCCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>233 203 151 136 61 58 35 35 34 20 19 8 7</canonical_bands>
                <polymorphic_bands>233 203 186 136 61 58 35 34 20 19 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTCAATCCTTTCACACTTCTA</pcr_primer_p1>
		<pcr_primer_p2>AATCCAAAAATCTTAACACAAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGTCAATCCTTTCACACTTCTACCAAGAAATCTGACGACAGAATGCCATTTTCTTCTATTTGCACGTTCTCTACACAATACAACGCATTTCTCCTTTATTTTCTGTAGACCAACTTTTTTCTGCTCATTTGAATTTCTGAGTACGCGTTTTTTTCTATGAGTTCATAATTAGTCAAAAAGCTGAAAATAGAGAAGAAGAGGCAACTGAAACTTTGGTTATCTGATCTCTTGTGTTAAGATTTTTGGATT</canonical_amplicon>
		<polymorphic_amplicon>ATGTCAATCCTTTCACACTTCTACCAAGAAATCTGACGACAGAATGCCATTTTCTTCTATTTGCACGTTCTCTACACAATACAACGCATTTCTCCTTTATTTTCTGTAGACCAACTTTTTTCTGCTCATTTGAATTTCTGAGTACGCGTTTTTTTCTATGAGTTCATAAWTAGTCAAAAAGCTGAAAATAGAGAAGAAGAGGCAACTGAAACTTTGGTTATCTGATCTCTTGTGTTAAGATTTTTGGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13839</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>969020</contig_pos>
        <strand>+</strand>
        <context>AAACACATAA[A/C]AACTAAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTTGAGACTCTAGTCTTTCTTGAATAAATTTAACCCGAAAACACATAA</left_flank>
        <right_flank>AACTAAAAATGCACCTATAAATTTTGTCCTTATGCTCTCGGGAATGTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATATTCCGAATATCCAAATATTTCGACATTCCAAAAATCTGAAGCTCGGTATTTTCGATATTCCGAAAGTTTCCGAAAAGGCTATTCCGAACATTCCCGGCAAAGGTTGGTTATATAAAACTCTTTGAGGAGTTGAACCTGAGAGAAAAAAATGGCAGTGTTGCTATCGGTAGAGCTACGCAGAAACACAAATCTCTTACGGTCTCACCGTCTACAACGAGACTTGTAACCATCTTGAATTTTTGTTCTTCATCTCCGTTTCATATGGGTATTTTTAGCATTGTCATCATTTCAGAGATCTCACAGCAGAAAAAGGAACTATCTATCTTTTCAAGAGACTCTCAAAATTCAATAAAGCCAGACATTTTTGATTGGAAACCCAGTGTTCAAGATGATGAGGCAATCTGGATCTTCAAGAACGTCAGAAAAAGTGAAGTATTCAGGGCTAAATTTGAGACTCTAGTCTTTCTTGAATAAATTTAACCCGAAAACACATAACAACTAAAAATGCACCTATAAATTTTGTCCTTATGCTCTCGGGAATGTTTTGATGGACTACGCAGTTATTCAAATGGAATTCGAGAAGTAACCGTCGGTTTTCGAATGTTGTTGATCTTTCGAAAATTTTTATACGAATCTACATCTGGCCCAAATAGTTGTAATAGGCACATCAAGTGACTCGAGACTGGTCATCGTCAGGCAAACCAATCAAAACTGTAATTGTCTTAATTTCCTAGCCCCTTCAACCTATTTCCTGTATTCTAAACCTCATCAACATGCTGTGACGTCTTCAAACAAAAAAGAAAGAAGAATAGGACCACGTCAGAGTCGAAAAAAATACAAGTGGTGTACAAAAGGGCTTTGAGAAAAATGTCCTCCGTTCAGTTTTATGATTTTATTAGTCCAGGGAGGTCCATTGGAAGAGAAAGGGGGAAGATTAAAAAGTAAGGGGGAGGAGGAAAGAATGAAAAGTATCAAGTTACTTCTGGAATCGTAGAT</canonical>
            <polymorphic>CATATTCCGAATATCCAAATATTTCGACATTCCAAAAATCTGAAGCTCGGTATTTTCGATATTCCGAAAGTTTCCGAAAAGGCTATTCCGAACATTCCCGGCAAAGGTTGGTTATATAAAACTCTTTGAGGAGTTGAACCTGAGAGAAAAAAATGGCAGTGTTGCTATCGGTAGAGCTACGCAGAAACACAAATCTCTTACGGTCTCACCGTCTACAACGAGACTTGTAACCATCTTGAATTTTTGTTCTTCATCTCCGTTTCATATGGGTATTTTTAGCATTGTCATCATTTCAGAGATCTCACAGCAGAAAAAGGAACTATCTATCTTTTCAAGAGACTCTCAAAATTCAATAAAGCCAGACATTTTTGATTGGAAACCCAGTGTTCAAGATGATGAGGCAATCTGGATCTTCAAGAACGTCAGAAAAAGTGAAGTATTCAGGGCTAAATTTGAGACTCTAGTCTTTCTTGAATAAATTTAACCCGAAAACACATAAMAACTAAAAATGCACCTATAAATTTTGTCCTTATGCTCTCGGGAATGTTTTGATGGACTACGCAGTTATTCAAATGGAATTCGAGAAGTAACCGTCGGTTTTCGAATGTTGTTGATCTTTCGAAAATTTTTATACGAATCTACATCTGGCCCAAATAGTTGTAATAGGCACATCAAGTGACTCGAGACTGGTCATCGTCAGGCAAACCAATCAAAACTGTAATTGTCTTAATTTCCTAGCCCCTTCAACCTATTTCCTGTATTCTAAACCTCATCAACATGCTGTGACGTCTTCAAACAAAAAAGAAAGAAGAATAGGACCACGTCAGAGTCGAAAAAAATACAAGTGGTGTACAAAAGGGCTTTGAGAAAAATGTCCTCCGTTCAGTTTTATGATTTTATTAGTCCAGGGAGGTCCATTGGAAGAGAAAGGGGGAAGATTAAAAAGTAAGGGGGAGGAGGAAAGAATGAAAAGTATCAAGTTACTTCTGGAATCGTAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGTGAAGTATTCAGGGCTAA</pcr_primer_p1>
		<pcr_primer_p2>CACTTGATGTGCCTATTACAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGTGAAGTATTCAGGGCTAAATTTGAGACTCTAGTCTTTCTTGAATAAATTTAACCCGAAAACACATAACAACTAAAAATGCACCTATAAATTTTGTCCTTATGCTCTCGGGAATGTTTTGATGGACTACGCAGTTATTCAAATGGAATTCGAGAAGTAACCGTCGGTTTTCGAATGTTGTTGATCTTTCGAAAATTTTTATACGAATCTACATCTGGCCCAAATAGTTGTAATAGGCACATCAAGTG</canonical_amplicon>
		<polymorphic_amplicon>AAAGTGAAGTATTCAGGGCTAAATTTGAGACTCTAGTCTTTCTTGAATAAATTTAACCCGAAAACACATAAMAACTAAAAATGCACCTATAAATTTTGTCCTTATGCTCTCGGGAATGTTTTGATGGACTACGCAGTTATTCAAATGGAATTCGAGAAGTAACCGTCGGTTTTCGAATGTTGTTGATCTTTCGAAAATTTTTATACGAATCTACATCTGGCCCAAATAGTTGTAATAGGCACATCAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13840</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>975573</contig_pos>
        <strand>+</strand>
        <context>AGAAACAAAA[G/T]CACTGGGTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAATAATAGAAAAAAAATAAATTGAAGAAGAGGAACAGAAGAAACAAAA</left_flank>
        <right_flank>CACTGGGTAGAATTGTATCAGAAGAAGCATCATCATGAATCATATATTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAGATTATAAGAACATTGAGCTGCAATATACTTTTTTCTAAATTGCTGAAACAAATACCGTAAAACCTGTATTAGAAGGGCCGACTCTTCCATTCCTTCAAGAAACTGTCTTTCAGACAACGCATTTGGATGGGGCCCTCCTTTTTTTCAAAGCCACTCATGGAGAGCCCTTCTATTAGAGGAACCCTTCTATTGAAGGAGCTCTTTTAATATAGGTTTTACAATTTTCTAAAAAACTCACCAATAACTGAAGCCATTGCTGTTGGATTCTGAATAACTGCTGGACAGTCTAACTCGATATCCAAATTTTTCTTGGATTTCAAAGATTTACTGACCAGGGAATTCATCTTTGAACTAGTCCTTCTTATTCTAACCGCATCTTCTATACACAATCTATCAATTATTTCCAGCCATGCCTGATCCATGTTACCCTGCAAGAATAAATAAAAATAATAGAAAAAAAATAAATTGAAGAAGAGGAACAGAAGAAACAAAAGCACTGGGTAGAATTGTATCAGAAGAAGCATCATCATGAATCATATATTTTCAATCAAATCATACATGATTCATGGCGATCAGAGAATTCCATTGGTTCACAGAATTTTCTGGAAATCATGGAAAAAAATAAACATGTGCGGAGAATATCTGGAGAAATGAGGTCTAGGATAGGGATAGAAAAGAGAAATAGAGAGTAAGAGAAAGCTCGTTTGGCACATGGAAACGCCGAAAAATGAGATGAACGGAAAGGGAGAAAGTCTCGGGATTCGGAATAGAATGGACGAGGCAATTTGAGATGATGATGTACTGCGTAGAGCTTCTTCTTCCCCTCGTTTTGGACGCCGCCGGAAATGGGATAGCTTTGAAACGGGGCCGGGGAAAATGAGGAAAATGGGGGTGGAAGAAGGATGAAAAATAAGATGAAGTCAGTGCAAAAAGAAAAAAAAGAAGTGCAGATGTTGTTGTTTCTGCAGATAAAGAGCAATGGATACATGCTTTT</canonical>
            <polymorphic>TTGAAGATTATAAGAACATTGAGCTGCAATATACTTTTTTCTAAATTGCTGAAACAAATACCGTAAAACCTGTATTAGAAGGGCCGACTCTTCCATTCCTTCAAGAAACTGTCTTTCAGACAACGCATTTGGATGGGGCCCTCCTTTTTTTCAAAGCCACTCATGGAGAGCCCTTCTATTAGAGGAACCCTTCTATTGAAGGAGCTCTTTTAATATAGGTTTTACAATTTTCTAAAAAACTCACCAATAACTGAAGCCATTGCTGTTGGATTCTGAATAACTGCTGGACAGTCTAACTCGATATCCAAATTTTTCTTGGATTTCAAAGATTTACTGACCAGGGAATTCATCTTTGAACTAGTCCTTCTTATTCTAACCGCATCTTCTATACACAATCTATCAATTATTTCCAGCCATGCCTGATCCATGTTACCCTGCAAGAATAAATAAAAATAATAGAAAAAAAATAAATTGAAGAAGAGGAACAGAAGAAACAAAAKCACTGGGTAGAATTGTATCAGAAGAAGCATCATCATGAATCATATATTTTCAATCAAATCATACATGATTCATGGCGATCAGAGAATTCCATTGGTTCACAGAATTTTCTGGAAATCATGGAAAAAAATAAACATGTGCGGAGAATATCTGGAGAAATGAGGTCTAGGATAGGGATAGAAAAGAGAAATAGAGAGTAAGAGAAAGCTCGTTTGGCACATGGAAACGCCGAAAAATGAGATGAACGGAAAGGGAGAAAGTCTCGGGATTCGGAATAGAATGGACGAGGCAATTTGAGATGATGATGTACTGCGTAGAGCTTCTTCTTCCCCTCGTTTTGGACGCCGCCGGAAATGGGATAGCTTTGAAACGGGGCCGGGGAAAATGAGGAAAATGGGGGTGGAAGAAGGATGAAAAATAAGATGAAGTCAGTGCAAAAAGAAAAAAAAGAAGTGCAGATGTTGTTGTTTCTGCAGATAAAGAGCAATGGATACATGCTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTATTCTAACCGCATCTTCTA</pcr_primer_p1>
		<pcr_primer_p2>TCCAGAAAATTCTGTGAACC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTTATTCTAACCGCATCTTCTATACACAATCTATCAATTATTTCCAGCCATGCCTGATCCATGTTACCCTGCAAGAATAAATAAAAATAATAGAAAAAAAATAAATTGAAGAAGAGGAACAGAAGAAACAAAAGCACTGGGTAGAATTGTATCAGAAGAAGCATCATCATGAATCATATATTTTCAATCAAATCATACATGATTCATGGCGATCAGAGAATTCCATTGGTTCACAGAATTTTCTGGA</canonical_amplicon>
		<polymorphic_amplicon>TCTTATTCTAACCGCATCTTCTATACACAATCTATCAATTATTTCCAGCCATGCCTGATCCATGTTACCCTGCAAGAATAAATAAAAATAATAGAAAAAAAATAAATTGAAGAAGAGGAACAGAAGAAACAAAAKCACTGGGTAGAATTGTATCAGAAGAAGCATCATCATGAATCATATATTTTCAATCAAATCATACATGATTCATGGCGATCAGAGAATTCCATTGGTTCACAGAATTTTCTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13872</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>1000177</contig_pos>
        <strand>+</strand>
        <context>AATCAATCCC[C/G]GATGCTGATG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCGAAGTACAAAATGTGTCTGAACATTTGTATTCTCAGGAATCAATCCC</left_flank>
        <right_flank>GATGCTGATGCAGCTCTAGAACCAACTCGTGATAAGCTGAGACCAGTAGC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCTGTGGTCGGAAGTTTTGCCGATGAGCACAGCTTGCTTCCACTGGATCAAGGAACTCTTATCGAAAATTGTGGAGTTACCTTTATGGTGGTAATCACCAAATCGGATCTTGGTATCTTTATTTCTTGTTGAAAAAAGTTATATTTTCTTGCGAAAGTTTTAGGAAAGGAGTTCACCGATGCTCAGTTTGCTAAGATTAGCATTCAACTTCGCAAGCTATGCCTCAGCTTAGGAGCCACTCTCATTTTCACAAGTACGAAGGAATCCAAGAACATTCAACTACTCCAGAAGTACATTGTCCACCGTTCTTTCGGCACGGCTTTCACCAGTGCCGCTCAAGTCATCGAAAGAGATTCTATTTTCGTTCCAGCTGGTTGGGATGGAGAGAAAAAGATCGACATCATCCGTGTAAGTTGGTTTATCACATTGTTTTCAATTAAAATTGTGTTCGAAGTACAAAATGTGTCTGAACATTTGTATTCTCAGGAATCAATCCCGGATGCTGATGCAGCTCTAGAACCAACTCGTGATAAGCTGAGACCAGTAGCCAAGGAACAGCTGATCGAAGCAGAGGAAGATCAGGCATTTCTCAAAAAGCTGATGGATACGTTGGCAACATCTACCACTAGCTCCGGTCCGAAACAAAGAACGATGCAGGAAGAGCCAGCCGACAAAGACAGTCCGCTGGCTAACTTCTTCTCAAATTTGCTAAAGGTTAGTTTATGTAGCTAAAATATGATTTGCTGTCTTGAGAAAACAGAAAAAATTTTTATTCAAAAAACTCAATCAATATTTAGGTTGCGGTAGTTTTCGGGGGTACGACTTGTTAGAGTTTTTTTTCAAAATAGAACTGCTACGAACGAGAGCTGCGTGAAATAGAAAACTAGGGGCATATCCGACATTAAATTGATCGGAATTTGTGTCTCTTGTTTTTCTTTTGTTTTTCAGAAAATTTATTCATTTGGAACGAACTATAACTTGAATTTTGCGCAGTTCTA</canonical>
            <polymorphic>CTTCTGTGGTCGGAAGTTTTGCCGATGAGCACAGCTTGCTTCCACTGGATCAAGGAACTCTTATCGAAAATTGTGGAGTTACCTTTATGGTGGTAATCACCAAATCGGATCTTGGTATCTTTATTTCTTGTTGAAAAAAGTTATATTTTCTTGCGAAAGTTTTAGGAAAGGAGTTCACCGATGCTCAGTTTGCTAAGATTAGCATTCAACTTCGCAAGCTATGCCTCAGCTTAGGAGCCACTCTCATTTTCACAAGTACGAAGGAATCCAAGAACATTCAACTACTCCAGAAGTACATTGTCCACCGTTCTTTCGGCACGGCTTTCACCAGTGCCGCTCAAGTCATCGAAAGAGATTCTATTTTCGTTCCAGCTGGTTGGGATGGAGAGAAAAAGATCGACATCATCCGTGTAAGTTGGTTTATCACATTGTTTTCAATTAAAATTGTGTTCGAAGTACAAAATGTGTCTGAACATTTGTATTCTCAGGAATCAATCCCSGATGCTGATGCAGCTCTAGAACCAACTCGTGATAAGCTGAGACCAGTAGCCAAGGAACAGCTGATCGAAGCAGAGGAAGATCAGGCATTTCTCAAAAAGCTGATGGATACGTTGGCAACATCTACCACTAGCTCCGGTCCGAAACAAAGAACGATGCAGGAAGAGCCAGCCGACAAAGACAGTCCGCTGGCTAACTTCTTCTCAAATTTGCTAAAGGTTAGTTTATGTAGCTAAAATATGATTTGCTGTCTTGAGAAAACAGAAAAAATTTTTATTCAAAAAACTCAATCAATATTTAGGTTGCGGTAGTTTTCGGGGGTACGACTTGTTAGAGTTTTTTTTCAAAATAGAACTGCTACGAACGAGAGCTGCGTGAAATAGAAAACTAGGGGCATATCCGACATTAAATTGATCGGAATTTGTGTCTCTTGTTTTTCTTTTGTTTTTCAGAAAATTTATTCATTTGGAACGAACTATAACTTGAATTTTGCGCAGTTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>498 366 136</canonical_bands>
                <polymorphic_bands>634 366</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAGAAAAAGATCGACATCAT</pcr_primer_p1>
		<pcr_primer_p2>CGGAGCTAGTGGTAGATGTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GAGAGAAAAAGATCGACATCATCCGTGTAAGTTGGTTTATCACATTGTTTTCAATTAAAATTGTGTTCGAAGTACAAAATGTGTCTGAACATTTGTATTCTCAGGAATCAATCCCGGATGCTGATGCAGCTCTAGAACCAACTCGTGATAAGCTGAGACCAGTAGCCAAGGAACAGCTGATCGAAGCAGAGGAAGATCAGGCATTTCTCAAAAAGCTGATGGATACGTTGGCAACATCTACCACTAGCTCCG</canonical_amplicon>
		<polymorphic_amplicon>GAGAGAAAAAGATCGACATCATCCGTGTAAGTTGGTTTATCACATTGTTTTCAATTAAAATTGTGTTCGAAGTACAAAATGTGTCTGAACATTTGTATTCTCAGGAATCAATCCCSGATGCTGATGCAGCTCTAGAACCAACTCGTGATAAGCTGAGACCAGTAGCCAAGGAACAGCTGATCGAAGCAGAGGAAGATCAGGCATTTCTCAAAAAGCTGATGGATACGTTGGCAACATCTACCACTAGCTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13873</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>1002547</contig_pos>
        <strand>+</strand>
        <context>ACATCATGTA[A/C]AATTAATCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTGAATATGATAGCTGTCAAACAAACAGCAGTTAGCCATAACATCATGTA</left_flank>
        <right_flank>AATTAATCAAAAAGTATATTTTAACCAAAAGTGTGACAGTGAAATATTCG</right_flank>
        <qual_score>146</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACGAGATCCTGCACTACTACCCGATCGTAAATTCCAACATCCGACGGTGTCATTTCAACATGATAGTTACTCGAAACAGTTTGAATCTCGAGTTTTCGATTCGAAGGAGTTGTAAAAGCCTTCATGATCAGTTGCGTTTTGTCCACTCCGACTCCGTAAAGCTCTCTGAAATCGATTTTGAACGAAAAATGAGAAAAGGCTTGCAAAACCTCAAGAGACACTTGATTCGAGTCTTTTTACCAGCACCACTCGGTCCACAAAACAAGAGATGAGGCATACAATCAGCAGATAGGAATTTCAAGTGTTTGGCTTGCTCCAAGTGATAGTCGACCCCGTCCTTTCCTAACAACTCCTTAGGACGATACTTATCGACCCATAACGCCATTATGATCTGAAACTGAAGCTTAAAAACAAAAAAATTGACAATATTTCATAAAAACTAATTGGAGTGAATATGATAGCTGTCAAACAAACAGCAGTTAGCCATAACATCATGTACAATTAATCAAAAAGTATATTTTAACCAAAAGTGTGACAGTGAAATATTCGACAAAAGACGCCGAATTATAATTGACATGTACATTCAAAGGTGCACAAAAGTGGAGTTAGACAATGTAAAAATTTCAAAATTATTGTATGTTCATTTTTCTCTTCAGTGCGATGATATCATCTCTGCGTTTCTTGTTCGCAATCTGACGGTTTTCCAGATTGGACTTGGTCGCTAGCTTTCCTGGAATAAGACCTTCTTCCATAGCCAAATTGTATTCACGATCAGTTAGCTGCGTTGTATCGACGAACACTTTCTTGGATGTATGGGGAGTGTAGCCGGCTCGTTTTGGAACTGAAAGTAATTGGGTATGTGTAGGTGCCGCAATGAAAGGGGGCGGGGCGACCAAATGTTTCTCCCCTTTTCAGAAGTCCATCTTTGAAGGCTTGTACCGGGCGTTAGAACCTTATTATTTTTAAGGTTAGAACTTGTACCTATGTAATCGACTGCGA</canonical>
            <polymorphic>CACGAGATCCTGCACTACTACCCGATCGTAAATTCCAACATCCGACGGTGTCATTTCAACATGATAGTTACTCGAAACAGTTTGAATCTCGAGTTTTCGATTCGAAGGAGTTGTAAAAGCCTTCATGATCAGTTGCGTTTTGTCCACTCCGACTCCGTAAAGCTCTCTGAAATCGATTTTGAACGAAAAATGAGAAAAGGCTTGCAAAACCTCAAGAGACACTTGATTCGAGTCTTTTTACCAGCACCACTCGGTCCACAAAACAAGAGATGAGGCATACAATCAGCAGATAGGAATTTCAAGTGTTTGGCTTGCTCCAAGTGATAGTCGACCCCGTCCTTTCCTAACAACTCCTTAGGACGATACTTATCGACCCATAACGCCATTATGATCTGAAACTGAAGCTTAAAAACAAAAAAATTGACAATATTTCATAAAAACTAATTGGAGTGAATATGATAGCTGTCAAACAAACAGCAGTTAGCCATAACATCATGTAMAATTAATCAAAAAGTATATTTTAACCAAAAGTGTGACAGTGAAATATTCGACAAAAGACGCCGAATTATAATTGACATGTACATTCAAAGGTGCACAAAAGTGGAGTTAGACAATGTAAAAATTTCAAAATTATTGTATGTTCATTTTTCTCTTCAGTGCGATGATATCATCTCTGCGTTTCTTGTTCGCAATCTGACGGTTTTCCAGATTGGACTTGGTCGCTAGCTTTCCTGGAATAAGACCTTCTTCCATAGCCAAATTGTATTCACGATCAGTTAGCTGCGTTGTATCGACGAACACTTTCTTGGATGTATGGGGAGTGTAGCCGGCTCGTTTTGGAACTGAAAGTAATTGGGTATGTGTAGGTGCCGCAATGAAAGGGGGCGGGGCGACCAAATGTTTCTCCCCTTTTCAGAAGTCCATCTTTGAAGGCTTGTACCGGGCGTTAGAACCTTATTATTTTTAAGGTTAGAACTTGTACCTATGTAATCGACTGCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGTACA</site>
                <isoschizomers>
                    <enzyme>AauI</enzyme>
                    <enzyme>Bsp1407I</enzyme>
                    <enzyme>BsrGI</enzyme>
                    <enzyme>SspBI</enzyme>
                </isoschizomers>
                <canonical_bands>496 422 82</canonical_bands>
                <polymorphic_bands>578 422</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>498 358 82 42 20</canonical_bands>
                <polymorphic_bands>580 358 42 20</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>496 422 82</canonical_bands>
                <polymorphic_bands>578 422</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTGCTCCAAGTGATAGTC</pcr_primer_p1>
		<pcr_primer_p2>GTCTTTTGTCGAATATTTCACTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTTGCTCCAAGTGATAGTCGACCCCGTCCTTTCCTAACAACTCCTTAGGACGATACTTATCGACCCATAACGCCATTATGATCTGAAACTGAAGCTTAAAAACAAAAAAATTGACAATATTTCATAAAAACTAATTGGAGTGAATATGATAGCTGTCAAACAAACAGCAGTTAGCCATAACATCATGTACAATTAATCAAAAAGTATATTTTAACCAAAAGTGTGACAGTGAAATATTCGACAAAAGAC</canonical_amplicon>
		<polymorphic_amplicon>GCTTGCTCCAAGTGATAGTCGACCCCGTCCTTTCCTAACAACTCCTTAGGACGATACTTATCGACCCATAACGCCATTATGATCTGAAACTGAAGCTTAAAAACAAAAAAATTGACAATATTTCATAAAAACTAATTGGAGTGAATATGATAGCTGTCAAACAAACAGCAGTTAGCCATAACATCATGTAMAATTAATCAAAAAGTATATTTTAACCAAAAGTGTGACAGTGAAATATTCGACAAAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13874</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>1011463</contig_pos>
        <strand>+</strand>
        <context>TAAGTCCTCC[A/G]GCTGTTGTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTAGCCATTTCGAGAGCATCGATCCGAATATAACTCCAATAAGTCCTCC</left_flank>
        <right_flank>GCTGTTGTGATTGCTCCGAAATAGAGTGCAACTCTGTCTTTATCAGTTGT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAGAAATCAAAAGAAGAGCTACACAACAATAAGTGGCAGTGACCAGAGAGTGATATTGGTCTTTTGGTAGTGTGGATCCATGACGAATCAAATCCGAGATCAAACCAATCAGATAAGGTCCAGATGCATCTCCGAACAGATGGGAAACCAGGACGAAATAGGAAAATGCAGTACTACGGCGATTTGGATGAATTACAGTCTGAAATCAACAGATGAAACTTGTTTCGAATATTAAGTACTACTCACCGTCAGCATATCAATATTGAGTCCCCAATTGAAGCAAAGGAATGTGAGCCCGAAGAAGATCATAACATACAAAAGCACCAAGCTCATCTCTCCGAAAATCATTCCAATTAGGAGAAGTGGAGCAGCCAAAAGAGCACCTCCTCCAGAAACCAATGGTGGAGCTCTTTCCGTTTGGAATCTTTTGAATGGTCCCCATCCGGCAACTAGCCATTTCGAGAGCATCGATCCGAATATAACTCCAATAAGTCCTCCGGCTGTTGTGATTGCTCCGAAATAGAGTGCAACTCTGTCTTTATCAGTTGTTGGTAGTTCTTTTGTATCATTGAGTCCTTGGTGCCAAGCAGTTAAATGCTGGATTACGGTAGGCTCCCACCAAGAAAGAGTTCCTGATACAAAAACAAGAGCAGTGTATCCCCAAGTACAAGCAACGAGAGTTGGGGTTTTGAGAAGAATGACAAGATCTTCGAGGTACGTGGTGTTGGTAGCGACTACAGTATCTTTGGCATCACCATTTGCTCTATCCGCTGCTCCTCTTTCCGGTTCATAAGTAAAAAGAACCAAAGCAATCATCACAATGAATCCAGCGATTGCCGACACTCGAATTCCCCATTGCCAATGTCCAGTTAATGTGGCAACGTTTGATCCAACGATGAATCCGAGACCACTTCCGACTGGAATTGCGAAATAGAAGATCATAAATACAGTACTCCTCTTTTGTCCATTGAACATATCAGAAATGAGAGAAGGAGCAAC</canonical>
            <polymorphic>GCAGAAATCAAAAGAAGAGCTACACAACAATAAGTGGCAGTGACCAGAGAGTGATATTGGTCTTTTGGTAGTGTGGATCCATGACGAATCAAATCCGAGATCAAACCAATCAGATAAGGTCCAGATGCATCTCCGAACAGATGGGAAACCAGGACGAAATAGGAAAATGCAGTACTACGGCGATTTGGATGAATTACAGTCTGAAATCAACAGATGAAACTTGTTTCGAATATTAAGTACTACTCACCGTCAGCATATCAATATTGAGTCCCCAATTGAAGCAAAGGAATGTGAGCCCGAAGAAGATCATAACATACAAAAGCACCAAGCTCATCTCTCCGAAAATCATTCCAATTAGGAGAAGTGGAGCAGCCAAAAGAGCACCTCCTCCAGAAACCAATGGTGGAGCTCTTTCCGTTTGGAATCTTTTGAATGGTCCCCATCCGGCAACTAGCCATTTCGAGAGCATCGATCCGAATATAACTCCAATAAGTCCTCCRGCTGTTGTGATTGCTCCGAAATAGAGTGCAACTCTGTCTTTATCAGTTGTTGGTAGTTCTTTTGTATCATTGAGTCCTTGGTGCCAAGCAGTTAAATGCTGGATTACGGTAGGCTCCCACCAAGAAAGAGTTCCTGATACAAAAACAAGAGCAGTGTATCCCCAAGTACAAGCAACGAGAGTTGGGGTTTTGAGAAGAATGACAAGATCTTCGAGGTACGTGGTGTTGGTAGCGACTACAGTATCTTTGGCATCACCATTTGCTCTATCCGCTGCTCCTCTTTCCGGTTCATAAGTAAAAAGAACCAAAGCAATCATCACAATGAATCCAGCGATTGCCGACACTCGAATTCCCCATTGCCAATGTCCAGTTAATGTGGCAACGTTTGATCCAACGATGAATCCGAGACCACTTCCGACTGGAATTGCGAAATAGAAGATCATAAATACAGTACTCCTCTTTTGTCCATTGAACATATCAGAAATGAGAGAAGGAGCAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>444 286 216 54</canonical_bands>
                <polymorphic_bands>444 340 216</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>387 276 112 47 46 43 36 34 19</canonical_bands>
                <polymorphic_bands>387 276 159 46 43 36 34 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGATCATAACATACAAAAGCAC</pcr_primer_p1>
		<pcr_primer_p2>ACCAACAACTGATAAAGACAGAG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GAAGATCATAACATACAAAAGCACCAAGCTCATCTCTCCGAAAATCATTCCAATTAGGAGAAGTGGAGCAGCCAAAAGAGCACCTCCTCCAGAAACCAATGGTGGAGCTCTTTCCGTTTGGAATCTTTTGAATGGTCCCCATCCGGCAACTAGCCATTTCGAGAGCATCGATCCGAATATAACTCCAATAAGTCCTCCGGCTGTTGTGATTGCTCCGAAATAGAGTGCAACTCTGTCTTTATCAGTTGTTGGT</canonical_amplicon>
		<polymorphic_amplicon>GAAGATCATAACATACAAAAGCACCAAGCTCATCTCTCCGAAAATCATTCCAATTAGGAGAAGTGGAGCAGCCAAAAGAGCACCTCCTCCAGAAACCAATGGTGGAGCTCTTTCCGTTTGGAATCTTTTGAATGGTCCCCATCCGGCAACTAGCCATTTCGAGAGCATCGATCCGAATATAACTCCAATAAGTCCTCCRGCTGTTGTGATTGCTCCGAAATAGAGTGCAACTCTGTCTTTATCAGTTGTTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13875</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>77924</contig_pos>
        <strand>+</strand>
        <context>ATGATAGAAA[A/C]GAAAGTCGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTCTTTTCGAAAATGCTGGAATTGGACAATGGTTGGATGATGATAGAAA</left_flank>
        <right_flank>GAAAGTCGAGAAGTTAGCAGTACTTGTTTTTGTCAGGAAGACGGAGACGA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAGGAGGCGAGACAACAAAAATTTTGTGGGACAGTTTGGGGGACGAAATGGCGCCGCGCTTATGTAGGCCATCGGTCGTCAGCCGTGTTTGCGCCCCTTAGCTTAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCAAGAGGTCAACCCCTCATGGGGGTTCGCTAGGCAAAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAACACTTAGAGTTATAATATATTCAGTAAATGGATCTCTTGGTATTCGATGCGAAACGAAACAAAAATCCATCAGAAACACCCGTATGCTTTCATAAAGAAGACCTTCACGAGATGTTAGGAAATCAAAAGATTGTCGCCTACTTCGTAGTTGATTGGTTTTATTAAATCTTTCAACTTGAAAATTTCAGAATGGAGGTCTTGTACAAATATTCGATGAACAGGCTTCTCGAATTCTTTTCGAAAATGCTGGAATTGGACAATGGTTGGATGATGATAGAAACGAAAGTCGAGAAGTTAGCAGTACTTGTTTTTGTCAGGAAGACGGAGACGAAGCTTCCCATAAAATGGCTGAAAAAGCTGCCGAAAACTGGTCAGGTTCGTTTCTCGCAAATTAAATATATAAAGAAAATGCACATTTCAGAACAATCCCCAGTTTACAATATACTCGTTTTGTCATCAATGGAAACCGTACTACTTTCTATTGACTGGCAGATTTTGAATGTAAAAAATATGCAAAAAGTTTTGACGGATAATGAGATTTGGTTGAAAATGAAAGACTACGATGATAAACCGGAGGATTTTGGAAAGTGTTTTGCCGTTTTTCGATTTTTGAAATTGAATGGATGGATCGTTTCGAGTGGTCTCACTTTTGGATGTCATTTTTGTATGCTCCTTTCAAGGCCGAATTTCTCAAATTTGTATTTTTTCAGTAATTTACTGTCACGGTGCTCAATTCTATCATTCATCTGCTGGAGTTCTCATCACAAATGAGATTGATCCT</canonical>
            <polymorphic>TAAAGGAGGCGAGACAACAAAAATTTTGTGGGACAGTTTGGGGGACGAAATGGCGCCGCGCTTATGTAGGCCATCGGTCGTCAGCCGTGTTTGCGCCCCTTAGCTTAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCAAGAGGTCAACCCCTCATGGGGGTTCGCTAGGCAAAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAACACTTAGAGTTATAATATATTCAGTAAATGGATCTCTTGGTATTCGATGCGAAACGAAACAAAAATCCATCAGAAACACCCGTATGCTTTCATAAAGAAGACCTTCACGAGATGTTAGGAAATCAAAAGATTGTCGCCTACTTCGTAGTTGATTGGTTTTATTAAATCTTTCAACTTGAAAATTTCAGAATGGAGGTCTTGTACAAATATTCGATGAACAGGCTTCTCGAATTCTTTTCGAAAATGCTGGAATTGGACAATGGTTGGATGATGATAGAAAMGAAAGTCGAGAAGTTAGCAGTACTTGTTTTTGTCAGGAAGACGGAGACGAAGCTTCCCATAAAATGGCTGAAAAAGCTGCCGAAAACTGGTCAGGTTCGTTTCTCGCAAATTAAATATATAAAGAAAATGCACATTTCAGAACAATCCCCAGTTTACAATATACTCGTTTTGTCATCAATGGAAACCGTACTACTTTCTATTGACTGGCAGATTTTGAATGTAAAAAATATGCAAAAAGTTTTGACGGATAATGAGATTTGGTTGAAAATGAAAGACTACGATGATAAACCGGAGGATTTTGGAAAGTGTTTTGCCGTTTTTCGATTTTTGAAATTGAATGGATGGATCGTTTCGAGTGGTCTCACTTTTGGATGTCATTTTTGTATGCTCCTTTCAAGGCCGAATTTCTCAAATTTGTATTTTTTCAGTAATTTACTGTCACGGTGCTCAATTCTATCATTCATCTGCTGGAGTTCTCATCACAAATGAGATTGATCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCTTGTACAAATATTCGATGA</pcr_primer_p1>
		<pcr_primer_p2>TATATTGTAAACTGGGGATTGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTCTTGTACAAATATTCGATGAACAGGCTTCTCGAATTCTTTTCGAAAATGCTGGAATTGGACAATGGTTGGATGATGATAGAAACGAAAGTCGAGAAGTTAGCAGTACTTGTTTTTGTCAGGAAGACGGAGACGAAGCTTCCCATAAAATGGCTGAAAAAGCTGCCGAAAACTGGTCAGGTTCGTTTCTCGCAAATTAAATATATAAAGAAAATGCACATTTCAGAACAATCCCCAGTTTACAATATA</canonical_amplicon>
		<polymorphic_amplicon>GGTCTTGTACAAATATTCGATGAACAGGCTTCTCGAATTCTTTTCGAAAATGCTGGAATTGGACAATGGTTGGATGATGATAGAAAMGAAAGTCGAGAAGTTAGCAGTACTTGTTTTTGTCAGGAAGACGGAGACGAAGCTTCCCATAAAATGGCTGAAAAAGCTGCCGAAAACTGGTCAGGTTCGTTTCTCGCAAATTAAATATATAAAGAAAATGCACATTTCAGAACAATCCCCAGTTTACAATATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13876</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>78115</contig_pos>
        <strand>+</strand>
        <context>GGAAACCGTA[C/T]TACTTTCTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACAATCCCCAGTTTACAATATACTCGTTTTGTCATCAATGGAAACCGTA</left_flank>
        <right_flank>TACTTTCTATTGACTGGCAGATTTTGAATGTAAAAAATATGCAAAAAGTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTTTGATGTCTGGCCTCCTTTAAACACTTAGAGTTATAATATATTCAGTAAATGGATCTCTTGGTATTCGATGCGAAACGAAACAAAAATCCATCAGAAACACCCGTATGCTTTCATAAAGAAGACCTTCACGAGATGTTAGGAAATCAAAAGATTGTCGCCTACTTCGTAGTTGATTGGTTTTATTAAATCTTTCAACTTGAAAATTTCAGAATGGAGGTCTTGTACAAATATTCGATGAACAGGCTTCTCGAATTCTTTTCGAAAATGCTGGAATTGGACAATGGTTGGATGATGATAGAAACGAAAGTCGAGAAGTTAGCAGTACTTGTTTTTGTCAGGAAGACGGAGACGAAGCTTCCCATAAAATGGCTGAAAAAGCTGCCGAAAACTGGTCAGGTTCGTTTCTCGCAAATTAAATATATAAAGAAAATGCACATTTCAGAACAATCCCCAGTTTACAATATACTCGTTTTGTCATCAATGGAAACCGTACTACTTTCTATTGACTGGCAGATTTTGAATGTAAAAAATATGCAAAAAGTTTTGACGGATAATGAGATTTGGTTGAAAATGAAAGACTACGATGATAAACCGGAGGATTTTGGAAAGTGTTTTGCCGTTTTTCGATTTTTGAAATTGAATGGATGGATCGTTTCGAGTGGTCTCACTTTTGGATGTCATTTTTGTATGCTCCTTTCAAGGCCGAATTTCTCAAATTTGTATTTTTTCAGTAATTTACTGTCACGGTGCTCAATTCTATCATTCATCTGCTGGAGTTCTCATCACAAATGAGATTGATCCTCAACGGCTTCTAACCCTCACTCGGATTTTGTCTCATAACAAGAAAGCATTAATCGTTGCAAACACATCAGAAGACGTGCAAAGTTTTGAAGACGTGCGGAAGGTAGAAGTGAAAATAGTGACAATGAAGACATACTTCCTGGAAAGAGATGTGGCATTGATGTCGAATAAGCAAAACGAAATTTATGAATT</canonical>
            <polymorphic>TTTTTTTTGATGTCTGGCCTCCTTTAAACACTTAGAGTTATAATATATTCAGTAAATGGATCTCTTGGTATTCGATGCGAAACGAAACAAAAATCCATCAGAAACACCCGTATGCTTTCATAAAGAAGACCTTCACGAGATGTTAGGAAATCAAAAGATTGTCGCCTACTTCGTAGTTGATTGGTTTTATTAAATCTTTCAACTTGAAAATTTCAGAATGGAGGTCTTGTACAAATATTCGATGAACAGGCTTCTCGAATTCTTTTCGAAAATGCTGGAATTGGACAATGGTTGGATGATGATAGAAACGAAAGTCGAGAAGTTAGCAGTACTTGTTTTTGTCAGGAAGACGGAGACGAAGCTTCCCATAAAATGGCTGAAAAAGCTGCCGAAAACTGGTCAGGTTCGTTTCTCGCAAATTAAATATATAAAGAAAATGCACATTTCAGAACAATCCCCAGTTTACAATATACTCGTTTTGTCATCAATGGAAACCGTAYTACTTTCTATTGACTGGCAGATTTTGAATGTAAAAAATATGCAAAAAGTTTTGACGGATAATGAGATTTGGTTGAAAATGAAAGACTACGATGATAAACCGGAGGATTTTGGAAAGTGTTTTGCCGTTTTTCGATTTTTGAAATTGAATGGATGGATCGTTTCGAGTGGTCTCACTTTTGGATGTCATTTTTGTATGCTCCTTTCAAGGCCGAATTTCTCAAATTTGTATTTTTTCAGTAATTTACTGTCACGGTGCTCAATTCTATCATTCATCTGCTGGAGTTCTCATCACAAATGAGATTGATCCTCAACGGCTTCTAACCCTCACTCGGATTTTGTCTCATAACAAGAAAGCATTAATCGTTGCAAACACATCAGAAGACGTGCAAAGTTTTGAAGACGTGCGGAAGGTAGAAGTGAAAATAGTGACAATGAAGACATACTTCCTGGAAAGAGATGTGGCATTGATGTCGAATAAGCAAAACGAAATTTATGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 230 168 100</canonical_bands>
                <polymorphic_bands>670 230 100</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTACTTGTTTTTGTCAGGAAGAC</pcr_primer_p1>
		<pcr_primer_p2>CATTTTCAACCAAATCTCATTAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GTACTTGTTTTTGTCAGGAAGACGGAGACGAAGCTTCCCATAAAATGGCTGAAAAAGCTGCCGAAAACTGGTCAGGTTCGTTTCTCGCAAATTAAATATATAAAGAAAATGCACATTTCAGAACAATCCCCAGTTTACAATATACTCGTTTTGTCATCAATGGAAACCGTACTACTTTCTATTGACTGGCAGATTTTGAATGTAAAAAATATGCAAAAAGTTTTGACGGATAATGAGATTTGGTTGAAAATG</canonical_amplicon>
		<polymorphic_amplicon>GTACTTGTTTTTGTCAGGAAGACGGAGACGAAGCTTCCCATAAAATGGCTGAAAAAGCTGCCGAAAACTGGTCAGGTTCGTTTCTCGCAAATTAAATATATAAAGAAAATGCACATTTCAGAACAATCCCCAGTTTACAATATACTCGTTTTGTCATCAATGGAAACCGTAYTACTTTCTATTGACTGGCAGATTTTGAATGTAAAAAATATGCAAAAAGTTTTGACGGATAATGAGATTTGGTTGAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13877</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>78227</contig_pos>
        <strand>+</strand>
        <context>GAGGAKTTTG[A/G]AAAGTGTTWT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAGATTTGGTTGAAAATGAAAGACTACGATGATAAACCGGAGGATTTTG</left_flank>
        <right_flank>AAAGTGTTTTGCCGTTTTTCGATTTTTGAAATTGAATGGATGGATCGTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTTTCATAAAGAAGACCTTCACGAGATGTTAGGAAATCAAAAGATTGTCGCCTACTTCGTAGTTGATTGGTTTTATTAAATCTTTCAACTTGAAAATTTCAGAATGGAGGTCTTGTACAAATATTCGATGAACAGGCTTCTCGAATTCTTTTCGAAAATGCTGGAATTGGACAATGGTTGGATGATGATAGAAACGAAAGTCGAGAAGTTAGCAGTACTTGTTTTTGTCAGGAAGACGGAGACGAAGCTTCCCATAAAATGGCTGAAAAAGCTGCCGAAAACTGGTCAGGTTCGTTTCTCGCAAATTAAATATATAAAGAAAATGCACATTTCAGAACAATCCCCAGTTTACAATATACTCGTTTTGTCATCAATGGAAACCGTACTACTTTCTATTGACTGGCAGATTTTGAATGTAAAAAATATGCAAAAAGTTTTGACGGATAATGAGATTTGGTTGAAAATGAAAGACTACGATGATAAACCGGAGGATTTTGGAAAGTGTTTTGCCGTTTTTCGATTTTTGAAATTGAATGGATGGATCGTTTCGAGTGGTCTCACTTTTGGATGTCATTTTTGTATGCTCCTTTCAAGGCCGAATTTCTCAAATTTGTATTTTTTCAGTAATTTACTGTCACGGTGCTCAATTCTATCATTCATCTGCTGGAGTTCTCATCACAAATGAGATTGATCCTCAACGGCTTCTAACCCTCACTCGGATTTTGTCTCATAACAAGAAAGCATTAATCGTTGCAAACACATCAGAAGACGTGCAAAGTTTTGAAGACGTGCGGAAGGTAGAAGTGAAAATAGTGACAATGAAGACATACTTCCTGGAAAGAGATGTGGCATTGATGTCGAATAAGCAAAACGAAATTTATGAATTGACTAATCATACTTAAAGTTGTTCTAATTTTGTTGTTCTTGTTGATATGAATAATATAATTATTCTTTATTGTCTGAAGTATGTCTGAACTTTTGAATGACGCCGGGACTGA</canonical>
            <polymorphic>TGCTTTCATAAAGAAGACCTTCACGAGATGTTAGGAAATCAAAAGATTGTCGCCTACTTCGTAGTTGATTGGTTTTATTAAATCTTTCAACTTGAAAATTTCAGAATGGAGGTCTTGTACAAATATTCGATGAACAGGCTTCTCGAATTCTTTTCGAAAATGCTGGAATTGGACAATGGTTGGATGATGATAGAAACGAAAGTCGAGAAGTTAGCAGTACTTGTTTTTGTCAGGAAGACGGAGACGAAGCTTCCCATAAAATGGCTGAAAAAGCTGCCGAAAACTGGTCAGGTTCGTTTCTCGCAAATTAAATATATAAAGAAAATGCACATTTCAGAACAATCCCCAGTTTACAATATACTCGTTTTGTCATCAATGGAAACCGTACTACTTTCTATTGACTGGCAGATTTTGAATGTAAAAAATATGCAAAAAGTTTTGACGGATAATGAGATTTGGTTGAAAATGAAAGACTACGATGATAAACCGGAGGATTTTGRAAAGTGTTTTGCCGTTTTTCGATTTTTGAAATTGAATGGATGGATCGTTTCGAGTGGTCTCACTTTTGGATGTCATTTTTGTATGCTCCTTTCAAGGCCGAATTTCTCAAATTTGTATTTTTTCAGTAATTTACTGTCACGGTGCTCAATTCTATCATTCATCTGCTGGAGTTCTCATCACAAATGAGATTGATCCTCAACGGCTTCTAACCCTCACTCGGATTTTGTCTCATAACAAGAAAGCATTAATCGTTGCAAACACATCAGAAGACGTGCAAAGTTTTGAAGACGTGCGGAAGGTAGAAGTGAAAATAGTGACAATGAAGACATACTTCCTGGAAAGAGATGTGGCATTGATGTCGAATAAGCAAAACGAAATTTATGAATTGACTAATCATACTTAAAGTTGTTCTAATTTTGTTGTTCTTGTTGATATGAATAATATAATTATTCTTTATTGTCTGAAGTATGTCTGAACTTTTGAATGACGCCGGGACTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAATCCCCAGTTTACAATATAC</pcr_primer_p1>
		<pcr_primer_p2>ATACAAAAATGACATCCAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AACAATCCCCAGTTTACAATATACTCGTTTTGTCATCAATGGAAACCGTACTACTTTCTATTGACTGGCAGATTTTGAATGTAAAAAATATGCAAAAAGTTTTGACGGATAATGAGATTTGGTTGAAAATGAAAGACTACGATGATAAACCGGAGGATTTTGGAAAGTGTTTTGCCGTTTTTCGATTTTTGAAATTGAATGGATGGATCGTTTCGAGTGGTCTCACTTTTGGATGTCATTTTTGTAT</canonical_amplicon>
		<polymorphic_amplicon>AACAATCCCCAGTTTACAATATACTCGTTTTGTCATCAATGGAAACCGTACTACTTTCTATTGACTGGCAGATTTTGAATGTAAAAAATATGCAAAAAGTTTTGACGGATAATGAGATTTGGTTGAAAATGAAAGACTACGATGATAAACCGGAGGATTTTGRAAAGTGTTTTGCCGTTTTTCGATTTTTGAAATTGAATGGATGGATCGTTTCGAGTGGTCTCACTTTTGGATGTCATTTTTGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13878</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>79482</contig_pos>
        <strand>+</strand>
        <context>TTGGTAAGAA[A/T]ACAGGAACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAACTAAATTGTATCACAGAAGTTTTAAAAGGAGCTTTTATTGGTAAGAA</left_flank>
        <right_flank>ACAGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTAATCGGATTCTTTGTATTCATATTCTATCTCTTTAGTCTTCCGTTTTTGATGATTTATGCCATCCCTAAAATTTTAATTGAAAAGGTAAGTGGCTATCATAATTCATGACTTAATTATGTTTTAGTGTCGAAAACCATCTCGAAAACGACGGATTCATAATTTTCGTATCCGTCAGACGGACGGATTTTTGGATTTCGAGAATCGAACTCTTCCGGTTAATCTTTTACATAATGAAAGAATAAATGGACCTAAAGAAAATGCTGAAGAAATTGAAAAGAGCTTTCAAACGGTTCTCGCTATGGATTTTCCAACTTTGCGGGGTTTGTTGAGAACCGGTTGGGTTACTGTATTCGAAACCCATTTCCAGGAGCCCTCCAATCTGAAAAATACAACGCCTACACTGTTTTGAGTGCATATGTTTGGAGAGCAATCAAAATCAATCAAAAACTAAATTGTATCACAGAAGTTTTAAAAGGAGCTTTTATTGGTAAGAAAACAGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGGGATCTTATTTCTCTGTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCTATTTGGAATTCCGTTTTCTGTGAAAAGCAATTTCCATGTGAGTCAAA</canonical>
            <polymorphic>TCCTAATCGGATTCTTTGTATTCATATTCTATCTCTTTAGTCTTCCGTTTTTGATGATTTATGCCATCCCTAAAATTTTAATTGAAAAGGTAAGTGGCTATCATAATTCATGACTTAATTATGTTTTAGTGTCGAAAACCATCTCGAAAACGACGGATTCATAATTTTCGTATCCGTCAGACGGACGGATTTTTGGATTTCGAGAATCGAACTCTTCCGGTTAATCTTTTACATAATGAAAGAATAAATGGACCTAAAGAAAATGCTGAAGAAATTGAAAAGAGCTTTCAAACGGTTCTCGCTATGGATTTTCCAACTTTGCGGGGTTTGTTGAGAACCGGTTGGGTTACTGTATTCGAAACCCATTTCCAGGAGCCCTCCAATCTGAAAAATACAACGCCTACACTGTTTTGAGTGCATATGTTTGGAGAGCAATCAAAATCAATCAAAAACTAAATTGTATCACAGAAGTTTTAAAAGGAGCTTTTATTGGTAAGAAWACAGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGGGATCTTATTTCTCTGTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCTATTTGGAATTCCGTTTTCTGTGAAAAGCAATTTCCATGTGAGTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAATCAAAATCAATCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCTCATAAAAGTATAATTGCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>448</pcr_amplicon_size>
		<canonical_amplicon>GCAATCAAAATCAATCAAAAACTAAATTGTATCACAGAAGTTTTAAAAGGAGCTTTTATTGGTAAGAAAACAGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGG</canonical_amplicon>
		<polymorphic_amplicon>GCAATCAAAATCAATCAAAAACTAAATTGTATCACAGAAGTTTTAAAAGGAGCTTTTATTGGTAAGAAWACAGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13879</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>79984</contig_pos>
        <strand>+</strand>
        <context>TGAGTCAAAG[C/T]GATATCAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTATTTGGAATTCCGTTTTCTGTGAAAAGCAATTTCCATGTGAGTCAAAG</left_flank>
        <right_flank>GATATCAGTTTTTGAAAATCAAAATTTGAATTCAGATGGATGGATATGAG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGGGATCTTATTTCTCTGTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCTATTTGGAATTCCGTTTTCTGTGAAAAGCAATTTCCATGTGAGTCAAAGTGATATCAGTTTTTGAAAATCAAAATTTGAATTCAGATGGATGGATATGAGGCTACTGTAGGATTGGCTAGCCTTTTGGAAACGCAAGAAAAATCCACATGCTCATTAGTTCAGTTTCTGAAAGAACAAGGAGCAATTCCGTTCTGTTTAACTAATGTTCCACAAGGACTTTTATCGTATATAACATCTAATCCATTATACGGAACCACTAAAAATCCATGGGACTTTTCTCGTACTCCTGGAGGATCGTCAGGTGGAGAAGCAGCTCTTCTGGCTGCAGGTGGAGCAGTTTTTGGAATAGGAAACGATCTGGTTGGCAGTCTTCGGATTCCAGCTGCATTTTGTGGAATAGTAACTCTGAAACCAACTCAGGATAGACTTCACGAGAGCGCAATGAATCCTGGACTTCCTGGAAGAGGAAGACTTGGATTGAGCTCTGGATTTTTTACCAGAAACGTGGCAGATCAAGAATTCTTGTTGAGACAGATAGTGGGAAATCCG</canonical>
            <polymorphic>AGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGGGATCTTATTTCTCTGTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCTATTTGGAATTCCGTTTTCTGTGAAAAGCAATTTCCATGTGAGTCAAAGYGATATCAGTTTTTGAAAATCAAAATTTGAATTCAGATGGATGGATATGAGGCTACTGTAGGATTGGCTAGCCTTTTGGAAACGCAAGAAAAATCCACATGCTCATTAGTTCAGTTTCTGAAAGAACAAGGAGCAATTCCGTTCTGTTTAACTAATGTTCCACAAGGACTTTTATCGTATATAACATCTAATCCATTATACGGAACCACTAAAAATCCATGGGACTTTTCTCGTACTCCTGGAGGATCGTCAGGTGGAGAAGCAGCTCTTCTGGCTGCAGGTGGAGCAGTTTTTGGAATAGGAAACGATCTGGTTGGCAGTCTTCGGATTCCAGCTGCATTTTGTGGAATAGTAACTCTGAAACCAACTCAGGATAGACTTCACGAGAGCGCAATGAATCCTGGACTTCCTGGAAGAGGAAGACTTGGATTGAGCTCTGGATTTTTTACCAGAAACGTGGCAGATCAAGAATTCTTGTTGAGACAGATAGTGGGAAATCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>217 215 95 76 65 63 48 46 37 37 33 27 18 10 9 4</canonical_bands>
                <polymorphic_bands>217 215 105 76 65 63 48 46 37 37 33 27 18 9 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTTATGAGGGATCTTATTTCTC</pcr_primer_p1>
		<pcr_primer_p2>AGAAACTGAACTAATGAGCATGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTTTTATGAGGGATCTTATTTCTCTGTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCTATTTGGAATTCCGTTTTCTGTGAAAAGCAATTTCCATGTGAGTCAAAGTGATATCAGTTTTTGAAAATCAAAATTTGAATTCAGATGGATGGATATGAGGCTACTGTAGGATTGGCTAGCCTTTTGGAAACGCAAGAAAAATCCACATGCTCATTAGTTCAGTTTCT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTATGAGGGATCTTATTTCTCTGTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCTATTTGGAATTCCGTTTTCTGTGAAAAGCAATTTCCATGTGAGTCAAAGYGATATCAGTTTTTGAAAATCAAAATTTGAATTCAGATGGATGGATATGAGGCTACTGTAGGATTGGCTAGCCTTTTGGAAACGCAAGAAAAATCCACATGCTCATTAGTTCAGTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13880</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>79936</contig_pos>
        <strand>+</strand>
        <context>AACCGGTTCT[A/C]TTTGGAATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCT</left_flank>
        <right_flank>TTTGGAATTCCGTTTTCTGTGAAAAGCAATTTCCATGTGAGTCAAAGTGA</right_flank>
        <qual_score>148</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTGTATCACAGAAGTTTTAAAAGGAGCTTTTATTGGTAAGAAAACAGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGGGATCTTATTTCTCTGTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCTATTTGGAATTCCGTTTTCTGTGAAAAGCAATTTCCATGTGAGTCAAAGTGATATCAGTTTTTGAAAATCAAAATTTGAATTCAGATGGATGGATATGAGGCTACTGTAGGATTGGCTAGCCTTTTGGAAACGCAAGAAAAATCCACATGCTCATTAGTTCAGTTTCTGAAAGAACAAGGAGCAATTCCGTTCTGTTTAACTAATGTTCCACAAGGACTTTTATCGTATATAACATCTAATCCATTATACGGAACCACTAAAAATCCATGGGACTTTTCTCGTACTCCTGGAGGATCGTCAGGTGGAGAAGCAGCTCTTCTGGCTGCAGGTGGAGCAGTTTTTGGAATAGGAAACGATCTGGTTGGCAGTCTTCGGATTCCAGCTGCATTTTGTGGAATAGTAACTCTGAAACCAACTCAGGATAGACTTCACGAGAGCGCAATGAATCCTGGACTTCCTGGAAGAGGAAGACTTGGATTGAGCTCTGGATTTTTTACCAGA</canonical>
            <polymorphic>AAATTGTATCACAGAAGTTTTAAAAGGAGCTTTTATTGGTAAGAAAACAGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGGGATCTTATTTCTCTGTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCTMTTTGGAATTCCGTTTTCTGTGAAAAGCAATTTCCATGTGAGTCAAAGTGATATCAGTTTTTGAAAATCAAAATTTGAATTCAGATGGATGGATATGAGGCTACTGTAGGATTGGCTAGCCTTTTGGAAACGCAAGAAAAATCCACATGCTCATTAGTTCAGTTTCTGAAAGAACAAGGAGCAATTCCGTTCTGTTTAACTAATGTTCCACAAGGACTTTTATCGTATATAACATCTAATCCATTATACGGAACCACTAAAAATCCATGGGACTTTTCTCGTACTCCTGGAGGATCGTCAGGTGGAGAAGCAGCTCTTCTGGCTGCAGGTGGAGCAGTTTTTGGAATAGGAAACGATCTGGTTGGCAGTCTTCGGATTCCAGCTGCATTTTGTGGAATAGTAACTCTGAAACCAACTCAGGATAGACTTCACGAGAGCGCAATGAATCCTGGACTTCCTGGAAGAGGAAGACTTGGATTGAGCTCTGGATTTTTTACCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTATGAGGGATCTTATTTCTC</pcr_primer_p1>
		<pcr_primer_p2>AGAAACTGAACTAATGAGCATGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTTTTATGAGGGATCTTATTTCTCTGTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCTATTTGGAATTCCGTTTTCTGTGAAAAGCAATTTCCATGTGAGTCAAAGTGATATCAGTTTTTGAAAATCAAAATTTGAATTCAGATGGATGGATATGAGGCTACTGTAGGATTGGCTAGCCTTTTGGAAACGCAAGAAAAATCCACATGCTCATTAGTTCAGTTTCT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTATGAGGGATCTTATTTCTCTGTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCTMTTTGGAATTCCGTTTTCTGTGAAAAGCAATTTCCATGTGAGTCAAAGTGATATCAGTTTTTGAAAATCAAAATTTGAATTCAGATGGATGGATATGAGGCTACTGTAGGATTGGCTAGCCTTTTGGAAACGCAAGAAAAATCCACATGCTCATTAGTTCAGTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13881</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>79875</contig_pos>
        <strand>+</strand>
        <context>CTTATTTCTC[A/T]GTTTTTTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGGGATCTTATTTCTC</left_flank>
        <right_flank>GTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAACGCCTACACTGTTTTGAGTGCATATGTTTGGAGAGCAATCAAAATCAATCAAAAACTAAATTGTATCACAGAAGTTTTAAAAGGAGCTTTTATTGGTAAGAAAACAGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGGGATCTTATTTCTCTGTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCTATTTGGAATTCCGTTTTCTGTGAAAAGCAATTTCCATGTGAGTCAAAGTGATATCAGTTTTTGAAAATCAAAATTTGAATTCAGATGGATGGATATGAGGCTACTGTAGGATTGGCTAGCCTTTTGGAAACGCAAGAAAAATCCACATGCTCATTAGTTCAGTTTCTGAAAGAACAAGGAGCAATTCCGTTCTGTTTAACTAATGTTCCACAAGGACTTTTATCGTATATAACATCTAATCCATTATACGGAACCACTAAAAATCCATGGGACTTTTCTCGTACTCCTGGAGGATCGTCAGGTGGAGAAGCAGCTCTTCTGGCTGCAGGTGGAGCAGTTTTTGGAATAGGAAACGATCTGGTTGGCAGTCTTCGGATTCCAGCTGCATTTTGTGGAATAGTAACTCTGAAACCAACTCAGGATAGACTTCACGAGAGCGC</canonical>
            <polymorphic>ACAACGCCTACACTGTTTTGAGTGCATATGTTTGGAGAGCAATCAAAATCAATCAAAAACTAAATTGTATCACAGAAGTTTTAAAAGGAGCTTTTATTGGTAAGAAAACAGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGGGATCTTATTTCTCWGTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCTATTTGGAATTCCGTTTTCTGTGAAAAGCAATTTCCATGTGAGTCAAAGTGATATCAGTTTTTGAAAATCAAAATTTGAATTCAGATGGATGGATATGAGGCTACTGTAGGATTGGCTAGCCTTTTGGAAACGCAAGAAAAATCCACATGCTCATTAGTTCAGTTTCTGAAAGAACAAGGAGCAATTCCGTTCTGTTTAACTAATGTTCCACAAGGACTTTTATCGTATATAACATCTAATCCATTATACGGAACCACTAAAAATCCATGGGACTTTTCTCGTACTCCTGGAGGATCGTCAGGTGGAGAAGCAGCTCTTCTGGCTGCAGGTGGAGCAGTTTTTGGAATAGGAAACGATCTGGTTGGCAGTCTTCGGATTCCAGCTGCATTTTGTGGAATAGTAACTCTGAAACCAACTCAGGATAGACTTCACGAGAGCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAATCAAAATCAATCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GGAAATTGCTTTTCACAGAA</pcr_primer_p2>
		<pcr_amplicon_size>557</pcr_amplicon_size>
		<canonical_amplicon>GCAATCAAAATCAATCAAAAACTAAATTGTATCACAGAAGTTTTAAAAGGAGCTTTTATTGGTAAGAAAACAGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGGGATCTTATTTCTCTGTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCTATTTGGAATTCCGTTTTCTGTGAAAAGCAATTTCC</canonical_amplicon>
		<polymorphic_amplicon>GCAATCAAAATCAATCAAAAACTAAATTGTATCACAGAAGTTTTAAAAGGAGCTTTTATTGGTAAGAAAACAGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGGGATCTTATTTCTCWGTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCTATTTGGAATTCCGTTTTCTGTGAAAAGCAATTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13882</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>83675</contig_pos>
        <strand>+</strand>
        <context>ACTCTATTTT[C/T]AGAAAATATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCACAAGCATCGTCCCATCGGTTAGTTTTTATCACAAAACTCTATTTT</left_flank>
        <right_flank>AGAAAATATTATTGTTTCAGAATTCGTCTAATCACAGCATCTGATTTCCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTAAAATCAACTCGTCTACATACAAACTCATTTCTCGACTCGTTTTCCCTAACTTTCATTTTACATTTCGCCGCCGTCACCCCTACAGAAAAATCGGTAGACTCTTCTGAATTTAATTTTTCTCGACTTTATGATTCAGATGGATCTCAGTGACGTCTCTGGTATCCAGTTGGCCACCAGTCCACCACCGAGAACCGCCATCGATTACAACTCTTCGTTCGAAGAGTCGCCGGCGAAACGTGTGAAATTTTCACATGAACTCACTAAATCATTCGACGAGAAACTCAGTCAAACAGTCACCCTTATTTGTCGGAATAATGAAGAAATGAGTTTTTTAAAGATATTCAAAGTTTTTTATATACAGTTATTGTAGGTTTTCGTCGAGCGAACTCTTTTATCACACTACTCCACCTACTTTCGTGTCCTTTTCTCTAACGAATTCCGTGATTCACAAGCATCGTCCCATCGGTTAGTTTTTATCACAAAACTCTATTTTTAGAAAATATTATTGTTTCAGAATTCGTCTAATCACAGCATCTGATTTCCATCTTCTCATCACAATTCCACGAGCCTTCGAACAAGGAATCAAACCAAACATCAATTTACAAAAAGCAGTTGAGGTTGTTCAATCCGTCTACAGTATCTCTAGAAAACCTGGAACCTTTTCAGCTTTTGGAACCAGCAGCCTACCTTCAAATCAATATTGCTCTCGAGCATATCAGTGATATCATCTGCGCAAATTTGTCCCACGAGAGTGAGAAAGATGTTCTAGTACCTGAATATCCGATAATTTTCAGATATCATCAAAATATTTCGTCTGGCTTTGCTCTATCATACACCATTGGCTCTTCGAGTCTGGAGAGCAATGATTCGCCAGTTTCAGACAGTAAGTCATAATCCATTTTTCCTGAGAATTTAATAGTTTCAGATGTTCGCCACGAATGCATATTTGACACTAAAAGAAAATGAATTGATTGGACTTCTCACTGATAAACAT</canonical>
            <polymorphic>AATTTAAAATCAACTCGTCTACATACAAACTCATTTCTCGACTCGTTTTCCCTAACTTTCATTTTACATTTCGCCGCCGTCACCCCTACAGAAAAATCGGTAGACTCTTCTGAATTTAATTTTTCTCGACTTTATGATTCAGATGGATCTCAGTGACGTCTCTGGTATCCAGTTGGCCACCAGTCCACCACCGAGAACCGCCATCGATTACAACTCTTCGTTCGAAGAGTCGCCGGCGAAACGTGTGAAATTTTCACATGAACTCACTAAATCATTCGACGAGAAACTCAGTCAAACAGTCACCCTTATTTGTCGGAATAATGAAGAAATGAGTTTTTTAAAGATATTCAAAGTTTTTTATATACAGTTATTGTAGGTTTTCGTCGAGCGAACTCTTTTATCACACTACTCCACCTACTTTCGTGTCCTTTTCTCTAACGAATTCCGTGATTCACAAGCATCGTCCCATCGGTTAGTTTTTATCACAAAACTCTATTTTYAGAAAATATTATTGTTTCAGAATTCGTCTAATCACAGCATCTGATTTCCATCTTCTCATCACAATTCCACGAGCCTTCGAACAAGGAATCAAACCAAACATCAATTTACAAAAAGCAGTTGAGGTTGTTCAATCCGTCTACAGTATCTCTAGAAAACCTGGAACCTTTTCAGCTTTTGGAACCAGCAGCCTACCTTCAAATCAATATTGCTCTCGAGCATATCAGTGATATCATCTGCGCAAATTTGTCCCACGAGAGTGAGAAAGATGTTCTAGTACCTGAATATCCGATAATTTTCAGATATCATCAAAATATTTCGTCTGGCTTTGCTCTATCATACACCATTGGCTCTTCGAGTCTGGAGAGCAATGATTCGCCAGTTTCAGACAGTAAGTCATAATCCATTTTTCCTGAGAATTTAATAGTTTCAGATGTTCGCCACGAATGCATATTTGACACTAAAAGAAAATGAATTGATTGGACTTCTCACTGATAAACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCACACTACTCCACCTACTTTC</pcr_primer_p1>
		<pcr_primer_p2>AGATACTGTAGACGGATTGAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATCACACTACTCCACCTACTTTCGTGTCCTTTTCTCTAACGAATTCCGTGATTCACAAGCATCGTCCCATCGGTTAGTTTTTATCACAAAACTCTATTTTTAGAAAATATTATTGTTTCAGAATTCGTCTAATCACAGCATCTGATTTCCATCTTCTCATCACAATTCCACGAGCCTTCGAACAAGGAATCAAACCAAACATCAATTTACAAAAAGCAGTTGAGGTTGTTCAATCCGTCTACAGTATCT</canonical_amplicon>
		<polymorphic_amplicon>TATCACACTACTCCACCTACTTTCGTGTCCTTTTCTCTAACGAATTCCGTGATTCACAAGCATCGTCCCATCGGTTAGTTTTTATCACAAAACTCTATTTTYAGAAAATATTATTGTTTCAGAATTCGTCTAATCACAGCATCTGATTTCCATCTTCTCATCACAATTCCACGAGCCTTCGAACAAGGAATCAAACCAAACATCAATTTACAAAAAGCAGTTGAGGTTGTTCAATCCGTCTACAGTATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13883</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>83781</contig_pos>
        <strand>+</strand>
        <context>AAACATCAAT[G/T]TACAAAAAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCATCACAATTCCACGAGCCTTCGAACAAGGAATCAAACCAAACATCAAT</left_flank>
        <right_flank>TACAAAAAGCAGTTGAGGTTGTTCAATCCGTCTACAGTATCTCTAGAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCTGAATTTAATTTTTCTCGACTTTATGATTCAGATGGATCTCAGTGACGTCTCTGGTATCCAGTTGGCCACCAGTCCACCACCGAGAACCGCCATCGATTACAACTCTTCGTTCGAAGAGTCGCCGGCGAAACGTGTGAAATTTTCACATGAACTCACTAAATCATTCGACGAGAAACTCAGTCAAACAGTCACCCTTATTTGTCGGAATAATGAAGAAATGAGTTTTTTAAAGATATTCAAAGTTTTTTATATACAGTTATTGTAGGTTTTCGTCGAGCGAACTCTTTTATCACACTACTCCACCTACTTTCGTGTCCTTTTCTCTAACGAATTCCGTGATTCACAAGCATCGTCCCATCGGTTAGTTTTTATCACAAAACTCTATTTTTAGAAAATATTATTGTTTCAGAATTCGTCTAATCACAGCATCTGATTTCCATCTTCTCATCACAATTCCACGAGCCTTCGAACAAGGAATCAAACCAAACATCAATTTACAAAAAGCAGTTGAGGTTGTTCAATCCGTCTACAGTATCTCTAGAAAACCTGGAACCTTTTCAGCTTTTGGAACCAGCAGCCTACCTTCAAATCAATATTGCTCTCGAGCATATCAGTGATATCATCTGCGCAAATTTGTCCCACGAGAGTGAGAAAGATGTTCTAGTACCTGAATATCCGATAATTTTCAGATATCATCAAAATATTTCGTCTGGCTTTGCTCTATCATACACCATTGGCTCTTCGAGTCTGGAGAGCAATGATTCGCCAGTTTCAGACAGTAAGTCATAATCCATTTTTCCTGAGAATTTAATAGTTTCAGATGTTCGCCACGAATGCATATTTGACACTAAAAGAAAATGAATTGATTGGACTTCTCACTGATAAACATTTGAATTTGAAGAGTGAGGATGAGCGGACAGTATGCAATATGAAAAAAATACAGATTTTAATTTTGATTTAAAATCTCAGGTAGTTGTCAACTGGATCAAACATAA</canonical>
            <polymorphic>CTTCTGAATTTAATTTTTCTCGACTTTATGATTCAGATGGATCTCAGTGACGTCTCTGGTATCCAGTTGGCCACCAGTCCACCACCGAGAACCGCCATCGATTACAACTCTTCGTTCGAAGAGTCGCCGGCGAAACGTGTGAAATTTTCACATGAACTCACTAAATCATTCGACGAGAAACTCAGTCAAACAGTCACCCTTATTTGTCGGAATAATGAAGAAATGAGTTTTTTAAAGATATTCAAAGTTTTTTATATACAGTTATTGTAGGTTTTCGTCGAGCGAACTCTTTTATCACACTACTCCACCTACTTTCGTGTCCTTTTCTCTAACGAATTCCGTGATTCACAAGCATCGTCCCATCGGTTAGTTTTTATCACAAAACTCTATTTTTAGAAAATATTATTGTTTCAGAATTCGTCTAATCACAGCATCTGATTTCCATCTTCTCATCACAATTCCACGAGCCTTCGAACAAGGAATCAAACCAAACATCAATKTACAAAAAGCAGTTGAGGTTGTTCAATCCGTCTACAGTATCTCTAGAAAACCTGGAACCTTTTCAGCTTTTGGAACCAGCAGCCTACCTTCAAATCAATATTGCTCTCGAGCATATCAGTGATATCATCTGCGCAAATTTGTCCCACGAGAGTGAGAAAGATGTTCTAGTACCTGAATATCCGATAATTTTCAGATATCATCAAAATATTTCGTCTGGCTTTGCTCTATCATACACCATTGGCTCTTCGAGTCTGGAGAGCAATGATTCGCCAGTTTCAGACAGTAAGTCATAATCCATTTTTCCTGAGAATTTAATAGTTTCAGATGTTCGCCACGAATGCATATTTGACACTAAAAGAAAATGAATTGATTGGACTTCTCACTGATAAACATTTGAATTTGAAGAGTGAGGATGAGCGGACAGTATGCAATATGAAAAAAATACAGATTTTAATTTTGATTTAAAATCTCAGGTAGTTGTCAACTGGATCAAACATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>192 139 131 124 80 56 56 50 47 42 40 32 6 5</canonical_bands>
                <polymorphic_bands>192 179 131 124 80 56 56 50 47 42 32 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCCCATCGGTTAGTTTTTAT</pcr_primer_p1>
		<pcr_primer_p2>GAGCAATATTGATTTGAAGGTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCCCATCGGTTAGTTTTTATCACAAAACTCTATTTTTAGAAAATATTATTGTTTCAGAATTCGTCTAATCACAGCATCTGATTTCCATCTTCTCATCACAATTCCACGAGCCTTCGAACAAGGAATCAAACCAAACATCAATTTACAAAAAGCAGTTGAGGTTGTTCAATCCGTCTACAGTATCTCTAGAAAACCTGGAACCTTTTCAGCTTTTGGAACCAGCAGCCTACCTTCAAATCAATATTGCTC</canonical_amplicon>
		<polymorphic_amplicon>GTCCCATCGGTTAGTTTTTATCACAAAACTCTATTTTTAGAAAATATTATTGTTTCAGAATTCGTCTAATCACAGCATCTGATTTCCATCTTCTCATCACAATTCCACGAGCCTTCGAACAAGGAATCAAACCAAACATCAATKTACAAAAAGCAGTTGAGGTTGTTCAATCCGTCTACAGTATCTCTAGAAAACCTGGAACCTTTTCAGCTTTTGGAACCAGCAGCCTACCTTCAAATCAATATTGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13884</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>83944</contig_pos>
        <strand>+</strand>
        <context>TGAGAAAGAT[G/T]TTCTAGTACC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATATCAGTGATATCATCTGCGCAAATTTGTCCCACGAGAGTGAGAAAGAT</left_flank>
        <right_flank>TTCTAGTACCTGAATATCCGATAATTTTCAGATATCATCAAAATATTTCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCATTCGACGAGAAACTCAGTCAAACAGTCACCCTTATTTGTCGGAATAATGAAGAAATGAGTTTTTTAAAGATATTCAAAGTTTTTTATATACAGTTATTGTAGGTTTTCGTCGAGCGAACTCTTTTATCACACTACTCCACCTACTTTCGTGTCCTTTTCTCTAACGAATTCCGTGATTCACAAGCATCGTCCCATCGGTTAGTTTTTATCACAAAACTCTATTTTTAGAAAATATTATTGTTTCAGAATTCGTCTAATCACAGCATCTGATTTCCATCTTCTCATCACAATTCCACGAGCCTTCGAACAAGGAATCAAACCAAACATCAATTTACAAAAAGCAGTTGAGGTTGTTCAATCCGTCTACAGTATCTCTAGAAAACCTGGAACCTTTTCAGCTTTTGGAACCAGCAGCCTACCTTCAAATCAATATTGCTCTCGAGCATATCAGTGATATCATCTGCGCAAATTTGTCCCACGAGAGTGAGAAAGATGTTCTAGTACCTGAATATCCGATAATTTTCAGATATCATCAAAATATTTCGTCTGGCTTTGCTCTATCATACACCATTGGCTCTTCGAGTCTGGAGAGCAATGATTCGCCAGTTTCAGACAGTAAGTCATAATCCATTTTTCCTGAGAATTTAATAGTTTCAGATGTTCGCCACGAATGCATATTTGACACTAAAAGAAAATGAATTGATTGGACTTCTCACTGATAAACATTTGAATTTGAAGAGTGAGGATGAGCGGACAGTATGCAATATGAAAAAAATACAGATTTTAATTTTGATTTAAAATCTCAGGTAGTTGTCAACTGGATCAAACATAATTCTCCTCTTCAATCCGATCGAATCGTGCAGTTTGCTCAGCGAAACTTCGCCCGACGACCACAGCCAGATTCCACAAAATATGAGGTCATTCGGAATCGACAGCCAATTGGAGCTGTTGTTTCATTTGGTGAGTAGGGTTTCCATTTGGGGGGAGATTCACCC</canonical>
            <polymorphic>AATCATTCGACGAGAAACTCAGTCAAACAGTCACCCTTATTTGTCGGAATAATGAAGAAATGAGTTTTTTAAAGATATTCAAAGTTTTTTATATACAGTTATTGTAGGTTTTCGTCGAGCGAACTCTTTTATCACACTACTCCACCTACTTTCGTGTCCTTTTCTCTAACGAATTCCGTGATTCACAAGCATCGTCCCATCGGTTAGTTTTTATCACAAAACTCTATTTTTAGAAAATATTATTGTTTCAGAATTCGTCTAATCACAGCATCTGATTTCCATCTTCTCATCACAATTCCACGAGCCTTCGAACAAGGAATCAAACCAAACATCAATTTACAAAAAGCAGTTGAGGTTGTTCAATCCGTCTACAGTATCTCTAGAAAACCTGGAACCTTTTCAGCTTTTGGAACCAGCAGCCTACCTTCAAATCAATATTGCTCTCGAGCATATCAGTGATATCATCTGCGCAAATTTGTCCCACGAGAGTGAGAAAGATKTTCTAGTACCTGAATATCCGATAATTTTCAGATATCATCAAAATATTTCGTCTGGCTTTGCTCTATCATACACCATTGGCTCTTCGAGTCTGGAGAGCAATGATTCGCCAGTTTCAGACAGTAAGTCATAATCCATTTTTCCTGAGAATTTAATAGTTTCAGATGTTCGCCACGAATGCATATTTGACACTAAAAGAAAATGAATTGATTGGACTTCTCACTGATAAACATTTGAATTTGAAGAGTGAGGATGAGCGGACAGTATGCAATATGAAAAAAATACAGATTTTAATTTTGATTTAAAATCTCAGGTAGTTGTCAACTGGATCAAACATAATTCTCCTCTTCAATCCGATCGAATCGTGCAGTTTGCTCAGCGAAACTTCGCCCGACGACCACAGCCAGATTCCACAAAATATGAGGTCATTCGGAATCGACAGCCAATTGGAGCTGTTGTTTCATTTGGTGAGTAGGGTTTCCATTTGGGGGGAGATTCACCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCGAACAAGGAATCAAAC</pcr_primer_p1>
		<pcr_primer_p2>CCAGACGAAATATTTTGATGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCGAACAAGGAATCAAACCAAACATCAATTTACAAAAAGCAGTTGAGGTTGTTCAATCCGTCTACAGTATCTCTAGAAAACCTGGAACCTTTTCAGCTTTTGGAACCAGCAGCCTACCTTCAAATCAATATTGCTCTCGAGCATATCAGTGATATCATCTGCGCAAATTTGTCCCACGAGAGTGAGAAAGATGTTCTAGTACCTGAATATCCGATAATTTTCAGATATCATCAAAATATTTCGTCTGG</canonical_amplicon>
		<polymorphic_amplicon>CTTCGAACAAGGAATCAAACCAAACATCAATTTACAAAAAGCAGTTGAGGTTGTTCAATCCGTCTACAGTATCTCTAGAAAACCTGGAACCTTTTCAGCTTTTGGAACCAGCAGCCTACCTTCAAATCAATATTGCTCTCGAGCATATCAGTGATATCATCTGCGCAAATTTGTCCCACGAGAGTGAGAAAGATKTTCTAGTACCTGAATATCCGATAATTTTCAGATATCATCAAAATATTTCGTCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13885</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>83962</contig_pos>
        <strand>+</strand>
        <context>ACCTGAATAT[C/T]CGATAATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCGCAAATTTGTCCCACGAGAGTGAGAAAGATGTTCTAGTACCTGAATAT</left_flank>
        <right_flank>CGATAATTTTCAGATATCATCAAAATATTTCGTCTGGCTTTGCTCTATCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGTCAAACAGTCACCCTTATTTGTCGGAATAATGAAGAAATGAGTTTTTTAAAGATATTCAAAGTTTTTTATATACAGTTATTGTAGGTTTTCGTCGAGCGAACTCTTTTATCACACTACTCCACCTACTTTCGTGTCCTTTTCTCTAACGAATTCCGTGATTCACAAGCATCGTCCCATCGGTTAGTTTTTATCACAAAACTCTATTTTTAGAAAATATTATTGTTTCAGAATTCGTCTAATCACAGCATCTGATTTCCATCTTCTCATCACAATTCCACGAGCCTTCGAACAAGGAATCAAACCAAACATCAATTTACAAAAAGCAGTTGAGGTTGTTCAATCCGTCTACAGTATCTCTAGAAAACCTGGAACCTTTTCAGCTTTTGGAACCAGCAGCCTACCTTCAAATCAATATTGCTCTCGAGCATATCAGTGATATCATCTGCGCAAATTTGTCCCACGAGAGTGAGAAAGATGTTCTAGTACCTGAATATCCGATAATTTTCAGATATCATCAAAATATTTCGTCTGGCTTTGCTCTATCATACACCATTGGCTCTTCGAGTCTGGAGAGCAATGATTCGCCAGTTTCAGACAGTAAGTCATAATCCATTTTTCCTGAGAATTTAATAGTTTCAGATGTTCGCCACGAATGCATATTTGACACTAAAAGAAAATGAATTGATTGGACTTCTCACTGATAAACATTTGAATTTGAAGAGTGAGGATGAGCGGACAGTATGCAATATGAAAAAAATACAGATTTTAATTTTGATTTAAAATCTCAGGTAGTTGTCAACTGGATCAAACATAATTCTCCTCTTCAATCCGATCGAATCGTGCAGTTTGCTCAGCGAAACTTCGCCCGACGACCACAGCCAGATTCCACAAAATATGAGGTCATTCGGAATCGACAGCCAATTGGAGCTGTTGTTTCATTTGGTGAGTAGGGTTTCCATTTGGGGGGAGATTCACCCGCCCGCACCCGCCCGGGG</canonical>
            <polymorphic>TCAGTCAAACAGTCACCCTTATTTGTCGGAATAATGAAGAAATGAGTTTTTTAAAGATATTCAAAGTTTTTTATATACAGTTATTGTAGGTTTTCGTCGAGCGAACTCTTTTATCACACTACTCCACCTACTTTCGTGTCCTTTTCTCTAACGAATTCCGTGATTCACAAGCATCGTCCCATCGGTTAGTTTTTATCACAAAACTCTATTTTTAGAAAATATTATTGTTTCAGAATTCGTCTAATCACAGCATCTGATTTCCATCTTCTCATCACAATTCCACGAGCCTTCGAACAAGGAATCAAACCAAACATCAATTTACAAAAAGCAGTTGAGGTTGTTCAATCCGTCTACAGTATCTCTAGAAAACCTGGAACCTTTTCAGCTTTTGGAACCAGCAGCCTACCTTCAAATCAATATTGCTCTCGAGCATATCAGTGATATCATCTGCGCAAATTTGTCCCACGAGAGTGAGAAAGATGTTCTAGTACCTGAATATYCGATAATTTTCAGATATCATCAAAATATTTCGTCTGGCTTTGCTCTATCATACACCATTGGCTCTTCGAGTCTGGAGAGCAATGATTCGCCAGTTTCAGACAGTAAGTCATAATCCATTTTTCCTGAGAATTTAATAGTTTCAGATGTTCGCCACGAATGCATATTTGACACTAAAAGAAAATGAATTGATTGGACTTCTCACTGATAAACATTTGAATTTGAAGAGTGAGGATGAGCGGACAGTATGCAATATGAAAAAAATACAGATTTTAATTTTGATTTAAAATCTCAGGTAGTTGTCAACTGGATCAAACATAATTCTCCTCTTCAATCCGATCGAATCGTGCAGTTTGCTCAGCGAAACTTCGCCCGACGACCACAGCCAGATTCCACAAAATATGAGGTCATTCGGAATCGACAGCCAATTGGAGCTGTTGTTTCATTTGGTGAGTAGGGTTTCCATTTGGGGGGAGATTCACCCGCCCGCACCCGCCCGGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>246 204 192 88 86 77 45 28 23 11</canonical_bands>
                <polymorphic_bands>257 204 192 88 86 77 45 28 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTAGAAAACCTGGAACCTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTATGACTTACTGTCTGAAACTGG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TCTAGAAAACCTGGAACCTTTTCAGCTTTTGGAACCAGCAGCCTACCTTCAAATCAATATTGCTCTCGAGCATATCAGTGATATCATCTGCGCAAATTTGTCCCACGAGAGTGAGAAAGATGTTCTAGTACCTGAATATCCGATAATTTTCAGATATCATCAAAATATTTCGTCTGGCTTTGCTCTATCATACACCATTGGCTCTTCGAGTCTGGAGAGCAATGATTCGCCAGTTTCAGACAGTAAGTCATAA</canonical_amplicon>
		<polymorphic_amplicon>TCTAGAAAACCTGGAACCTTTTCAGCTTTTGGAACCAGCAGCCTACCTTCAAATCAATATTGCTCTCGAGCATATCAGTGATATCATCTGCGCAAATTTGTCCCACGAGAGTGAGAAAGATGTTCTAGTACCTGAATATYCGATAATTTTCAGATATCATCAAAATATTTCGTCTGGCTTTGCTCTATCATACACCATTGGCTCTTCGAGTCTGGAGAGCAATGATTCGCCAGTTTCAGACAGTAAGTCATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13886</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>83973</contig_pos>
        <strand>+</strand>
        <context>CGATAATTTT[C/T]AGATATCATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCCACGAGAGTGAGAAAGATGTTCTAGTACCTGAATATCCGATAATTTT</left_flank>
        <right_flank>AGATATCATCAAAATATTTCGTCTGGCTTTGCTCTATCATACACCATTGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCACCCTTATTTGTCGGAATAATGAAGAAATGAGTTTTTTAAAGATATTCAAAGTTTTTTATATACAGTTATTGTAGGTTTTCGTCGAGCGAACTCTTTTATCACACTACTCCACCTACTTTCGTGTCCTTTTCTCTAACGAATTCCGTGATTCACAAGCATCGTCCCATCGGTTAGTTTTTATCACAAAACTCTATTTTTAGAAAATATTATTGTTTCAGAATTCGTCTAATCACAGCATCTGATTTCCATCTTCTCATCACAATTCCACGAGCCTTCGAACAAGGAATCAAACCAAACATCAATTTACAAAAAGCAGTTGAGGTTGTTCAATCCGTCTACAGTATCTCTAGAAAACCTGGAACCTTTTCAGCTTTTGGAACCAGCAGCCTACCTTCAAATCAATATTGCTCTCGAGCATATCAGTGATATCATCTGCGCAAATTTGTCCCACGAGAGTGAGAAAGATGTTCTAGTACCTGAATATCCGATAATTTTCAGATATCATCAAAATATTTCGTCTGGCTTTGCTCTATCATACACCATTGGCTCTTCGAGTCTGGAGAGCAATGATTCGCCAGTTTCAGACAGTAAGTCATAATCCATTTTTCCTGAGAATTTAATAGTTTCAGATGTTCGCCACGAATGCATATTTGACACTAAAAGAAAATGAATTGATTGGACTTCTCACTGATAAACATTTGAATTTGAAGAGTGAGGATGAGCGGACAGTATGCAATATGAAAAAAATACAGATTTTAATTTTGATTTAAAATCTCAGGTAGTTGTCAACTGGATCAAACATAATTCTCCTCTTCAATCCGATCGAATCGTGCAGTTTGCTCAGCGAAACTTCGCCCGACGACCACAGCCAGATTCCACAAAATATGAGGTCATTCGGAATCGACAGCCAATTGGAGCTGTTGTTTCATTTGGTGAGTAGGGTTTCCATTTGGGGGGAGATTCACCCGCCCGCACCCGCCCGGGGGGCTCGGAAAA</canonical>
            <polymorphic>GTCACCCTTATTTGTCGGAATAATGAAGAAATGAGTTTTTTAAAGATATTCAAAGTTTTTTATATACAGTTATTGTAGGTTTTCGTCGAGCGAACTCTTTTATCACACTACTCCACCTACTTTCGTGTCCTTTTCTCTAACGAATTCCGTGATTCACAAGCATCGTCCCATCGGTTAGTTTTTATCACAAAACTCTATTTTTAGAAAATATTATTGTTTCAGAATTCGTCTAATCACAGCATCTGATTTCCATCTTCTCATCACAATTCCACGAGCCTTCGAACAAGGAATCAAACCAAACATCAATTTACAAAAAGCAGTTGAGGTTGTTCAATCCGTCTACAGTATCTCTAGAAAACCTGGAACCTTTTCAGCTTTTGGAACCAGCAGCCTACCTTCAAATCAATATTGCTCTCGAGCATATCAGTGATATCATCTGCGCAAATTTGTCCCACGAGAGTGAGAAAGATGTTCTAGTACCTGAATATCCGATAATTTTYAGATATCATCAAAATATTTCGTCTGGCTTTGCTCTATCATACACCATTGGCTCTTCGAGTCTGGAGAGCAATGATTCGCCAGTTTCAGACAGTAAGTCATAATCCATTTTTCCTGAGAATTTAATAGTTTCAGATGTTCGCCACGAATGCATATTTGACACTAAAAGAAAATGAATTGATTGGACTTCTCACTGATAAACATTTGAATTTGAAGAGTGAGGATGAGCGGACAGTATGCAATATGAAAAAAATACAGATTTTAATTTTGATTTAAAATCTCAGGTAGTTGTCAACTGGATCAAACATAATTCTCCTCTTCAATCCGATCGAATCGTGCAGTTTGCTCAGCGAAACTTCGCCCGACGACCACAGCCAGATTCCACAAAATATGAGGTCATTCGGAATCGACAGCCAATTGGAGCTGTTGTTTCATTTGGTGAGTAGGGTTTCCATTTGGGGGGAGATTCACCCGCCCGCACCCGCCCGGGGGGCTCGGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>246 204 192 94 86 77 45 23 17 11 5</canonical_bands>
                <polymorphic_bands>246 204 192 97 94 77 45 23 17 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTAGAAAACCTGGAACCTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTATGACTTACTGTCTGAAACTGG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TCTAGAAAACCTGGAACCTTTTCAGCTTTTGGAACCAGCAGCCTACCTTCAAATCAATATTGCTCTCGAGCATATCAGTGATATCATCTGCGCAAATTTGTCCCACGAGAGTGAGAAAGATGTTCTAGTACCTGAATATCCGATAATTTTCAGATATCATCAAAATATTTCGTCTGGCTTTGCTCTATCATACACCATTGGCTCTTCGAGTCTGGAGAGCAATGATTCGCCAGTTTCAGACAGTAAGTCATAA</canonical_amplicon>
		<polymorphic_amplicon>TCTAGAAAACCTGGAACCTTTTCAGCTTTTGGAACCAGCAGCCTACCTTCAAATCAATATTGCTCTCGAGCATATCAGTGATATCATCTGCGCAAATTTGTCCCACGAGAGTGAGAAAGATGTTCTAGTACCTGAATATCCGATAATTTTYAGATATCATCAAAATATTTCGTCTGGCTTTGCTCTATCATACACCATTGGCTCTTCGAGTCTGGAGAGCAATGATTCGCCAGTTTCAGACAGTAAGTCATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13887</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>84085</contig_pos>
        <strand>+</strand>
        <context>ATCCATTTTT[C/T]CTGAGAATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGAGAGCAATGATTCGCCAGTTTCAGACAGTAAGTCATAATCCATTTTT</left_flank>
        <right_flank>CTGAGAATTTAATAGTTTCAGATGTTCGCCACGAATGCATATTTGACACT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCACCTACTTTCGTGTCCTTTTCTCTAACGAATTCCGTGATTCACAAGCATCGTCCCATCGGTTAGTTTTTATCACAAAACTCTATTTTTAGAAAATATTATTGTTTCAGAATTCGTCTAATCACAGCATCTGATTTCCATCTTCTCATCACAATTCCACGAGCCTTCGAACAAGGAATCAAACCAAACATCAATTTACAAAAAGCAGTTGAGGTTGTTCAATCCGTCTACAGTATCTCTAGAAAACCTGGAACCTTTTCAGCTTTTGGAACCAGCAGCCTACCTTCAAATCAATATTGCTCTCGAGCATATCAGTGATATCATCTGCGCAAATTTGTCCCACGAGAGTGAGAAAGATGTTCTAGTACCTGAATATCCGATAATTTTCAGATATCATCAAAATATTTCGTCTGGCTTTGCTCTATCATACACCATTGGCTCTTCGAGTCTGGAGAGCAATGATTCGCCAGTTTCAGACAGTAAGTCATAATCCATTTTTCCTGAGAATTTAATAGTTTCAGATGTTCGCCACGAATGCATATTTGACACTAAAAGAAAATGAATTGATTGGACTTCTCACTGATAAACATTTGAATTTGAAGAGTGAGGATGAGCGGACAGTATGCAATATGAAAAAAATACAGATTTTAATTTTGATTTAAAATCTCAGGTAGTTGTCAACTGGATCAAACATAATTCTCCTCTTCAATCCGATCGAATCGTGCAGTTTGCTCAGCGAAACTTCGCCCGACGACCACAGCCAGATTCCACAAAATATGAGGTCATTCGGAATCGACAGCCAATTGGAGCTGTTGTTTCATTTGGTGAGTAGGGTTTCCATTTGGGGGGAGATTCACCCGCCCGCACCCGCCCGGGGGGCTCGGAAAATACGTGATTATCATTAAAAATTAAATAAAAATTCACACGCAAATAATCGCGGGGGCCGCGGGGGGCCGTGGGTGGTAGCCCCCCCCCCCCCCCCGGCGGGTGGCTCTTTCTT</canonical>
            <polymorphic>CCACCTACTTTCGTGTCCTTTTCTCTAACGAATTCCGTGATTCACAAGCATCGTCCCATCGGTTAGTTTTTATCACAAAACTCTATTTTTAGAAAATATTATTGTTTCAGAATTCGTCTAATCACAGCATCTGATTTCCATCTTCTCATCACAATTCCACGAGCCTTCGAACAAGGAATCAAACCAAACATCAATTTACAAAAAGCAGTTGAGGTTGTTCAATCCGTCTACAGTATCTCTAGAAAACCTGGAACCTTTTCAGCTTTTGGAACCAGCAGCCTACCTTCAAATCAATATTGCTCTCGAGCATATCAGTGATATCATCTGCGCAAATTTGTCCCACGAGAGTGAGAAAGATGTTCTAGTACCTGAATATCCGATAATTTTCAGATATCATCAAAATATTTCGTCTGGCTTTGCTCTATCATACACCATTGGCTCTTCGAGTCTGGAGAGCAATGATTCGCCAGTTTCAGACAGTAAGTCATAATCCATTTTTYCTGAGAATTTAATAGTTTCAGATGTTCGCCACGAATGCATATTTGACACTAAAAGAAAATGAATTGATTGGACTTCTCACTGATAAACATTTGAATTTGAAGAGTGAGGATGAGCGGACAGTATGCAATATGAAAAAAATACAGATTTTAATTTTGATTTAAAATCTCAGGTAGTTGTCAACTGGATCAAACATAATTCTCCTCTTCAATCCGATCGAATCGTGCAGTTTGCTCAGCGAAACTTCGCCCGACGACCACAGCCAGATTCCACAAAATATGAGGTCATTCGGAATCGACAGCCAATTGGAGCTGTTGTTTCATTTGGTGAGTAGGGTTTCCATTTGGGGGGAGATTCACCCGCCCGCACCCGCCCGGGGGGCTCGGAAAATACGTGATTATCATTAAAAATTAAATAAAAATTCACACGCAAATAATCGCGGGGGCCGCGGGGGGCCGTGGGTGGTAGCCCCCCCCCCCCCCCCGGCGGGTGGCTCTTTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>500 239 147 63 51</canonical_bands>
                <polymorphic_bands>551 239 147 63</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATATTTCGTCTGGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCATATTGCATACTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AAAATATTTCGTCTGGCTTTGCTCTATCATACACCATTGGCTCTTCGAGTCTGGAGAGCAATGATTCGCCAGTTTCAGACAGTAAGTCATAATCCATTTTTCCTGAGAATTTAATAGTTTCAGATGTTCGCCACGAATGCATATTTGACACTAAAAGAAAATGAATTGATTGGACTTCTCACTGATAAACATTTGAATTTGAAGAGTGAGGATGAGCGGACAGTATGCAATATGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAATATTTCGTCTGGCTTTGCTCTATCATACACCATTGGCTCTTCGAGTCTGGAGAGCAATGATTCGCCAGTTTCAGACAGTAAGTCATAATCCATTTTTYCTGAGAATTTAATAGTTTCAGATGTTCGCCACGAATGCATATTTGACACTAAAAGAAAATGAATTGATTGGACTTCTCACTGATAAACATTTGAATTTGAAGAGTGAGGATGAGCGGACAGTATGCAATATGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13888</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>88033</contig_pos>
        <strand></strand>
        <context>AAAAATTTCA[C/T]ACGAtttttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAGTTCAAAGTCTATGAAATTTATCTAAAATTCGGGGAAAAAATTTCA</left_flank>
        <right_flank>ACGATTTTTTGTGGTTCTCGGGATTTTTGTGAAAAAAAAATTCAAATCGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACGAGCAAAATAGTGTGTAAGACGAAGAGACGCAGACATTTTAGAGAGGTGTGCATAATAGATATGTACTCTATCACTCTTTTCTTACTTTCCGACGTCTTATCACCTCGGACGAGTTGTTGAACGAGAAGAGCAATGATTTTGAGTTGAACGGATCGTTTTGTTTTGTTTTTGATTTATTTCAATTGATGTCATTTACCTGGTCTAATTTCAATGCGCATTACGGTTGAAAATTCGAGCGAGGGAGGAGCTTAAATCCGGTGGCAAAACCTTTAAAGGAGCATGTATTTTTCGTGATTTTTTTCGCCATTTTTTTGTCGATTTTTTGAGGATTTTCGTTTTCGATAGCTTTCATCGTTGATATGCGATTTTTCTAAGATTAAGGTTTTCGAAGGTTTAAATTTCTAGATTTGTAAGATTCATTTTCTGGCAATGAGATTTATTATTTTAAAGTTCAAAGTCTATGAAATTTATCTAAAATTCGGGGAAAAAATTTCACACGATTTTTTGTGGTTCTCGGGATTTTTGTGAAAAAAAAATTCAAATCGAAATTCGTCAAAAATGGGTCGAAAAATAATTACGAAACGTAGATCTTGCGAAAAATAGATTGACCGAAGATCCGCCAACTATGAGCCAATATATGTATCTCGCGTTATTATAAAGATATCAGGTCAACTGACAAACTGTTTATCATAATATCAAGAATATTTTGTCAGTTGACCACATTTTGATATCTTTCACAAGGTCCGAGATATATGAGCTCAAATTTGGCAGATTGAGGTGACGGAGTGTTTATGGTACATTTATAGACTTCCAGGCATCTCATTTTTCTAGATTCCCATTCCCAAGGTTTTTCAATTAGAAGAAGTTATTGAAGTAAAAGAAAGTTCACTGAACACATGGTGCAAACTCATTGACCTTTTTCTGAATCTCCTCATCCGTGGATTTATTCTTGAACCACAGAGCGATTGCTCTTTACACCGTTCCATATTGCTCCGC</canonical>
            <polymorphic>AACGAGCAAAATAGTGTGTAAGACGAAGAGACGCAGACATTTTAGAGAGGTGTGCATAATAGATATGTACTCTATCACTCTTTTCTTACTTTCCGACGTCTTATCACCTCGGACGAGTTGTTGAACGAGAAGAGCAATGATTTTGAGTTGAACGGATCGTTTTGTTTTGTTTTTGATTTATTTCAATTGATGTCATTTACCTGGTCTAATTTCAATGCGCATTACGGTTGAAAATTCGAGCGAGGGAGGAGCTTAAATCCGGTGGCAAAACCTTTAAAGGAGCATGTATTTTTCGTGATTTTTTTCGCCATTTTTTTGTCGATTTTTTGAGGATTTTCGTTTTCGATAGCTTTCATCGTTGATATGCGATTTTTCTAAGATTAAGGTTTTCGAAGGTTTAAATTTCTAGATTTGTAAGATTCATTTTCTGGCAATGAGATTTATTATTTTAAAGTTCAAAGTCTATGAAATTTATCTAAAATTCGGGGAAAAAATTTCAYACGATTTTTTGTGGTTCTCGGGATTTTTGTGAAAAAAAAATTCAAATCGAAATTCGTCAAAAATGGGTCGAAAAATAATTACGAAACGTAGATCTTGCGAAAAATAGATTGACCGAAGATCCGCCAACTATGAGCCAATATATGTATCTCGCGTTATTATAAAGATATCAGGTCAACTGACAAACTGTTTATCATAATATCAAGAATATTTTGTCAGTTGACCACATTTTGATATCTTTCACAAGGTCCGAGATATATGAGCTCAAATTTGGCAGATTGAGGTGACGGAGTGTTTATGGTACATTTATAGACTTCCAGGCATCTCATTTTTCTAGATTCCCATTCCCAAGGTTTTTCAATTAGAAGAAGTTATTGAAGTAAAAGAAAGTTCACTGAACACATGGTGCAAACTCATTGACCTTTTTCTGAATCTCCTCATCCGTGGATTTATTCTTGAACCACAGAGCGATTGCTCTTTACACCGTTCCATATTGCTCCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>202 193 158 100 43 38 34 33 29 23 20 19 18 17 17 16 12 8 7 7 2 2 2</canonical_bands>
                <polymorphic_bands>216 193 158 100 43 38 34 33 29 23 20 19 18 17 17 16 8 7 7 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCGTTGATATGCGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCGCAAGATCTACGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATCGTTGATATGCGATTTTTCTAAGATTAAGGTTTTCGAAGGTTTAAATTTCTAGATTTGTAAGATTCATTTTCTGGCAATGAGATTTATTATTTTAAAGTTCAAAGTCTATGAAATTTATCTAAAATTCGGGGAAAAAATTTCACACGATTTTTTGTGGTTCTCGGGATTTTTGTGAAAAAAAAATTCAAATCGAAATTCGTCAAAAATGGGTCGAAAAATAATTACGAAACGTAGATCTTGCGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATCGTTGATATGCGATTTTTCTAAGATTAAGGTTTTCGAAGGTTTAAATTTCTAGATTTGTAAGATTCATTTTCTGGCAATGAGATTTATTATTTTAAAGTTCAAAGTCTATGAAATTTATCTAAAATTCGGGGAAAAAATTTCAYACGATTTTTTGTGGTTCTCGGGATTTTTGTGAAAAAAAAATTCAAATCGAAATTCGTCAAAAATGGGTCGAAAAATAATTACGAAACGTAGATCTTGCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13889</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>88021</contig_pos>
        <strand>+</strand>
        <context>AAAATTCGGY[A/G]AAAAAATTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTTATTATTTTAAAGTTCAAAGTCTATGAAATTTATCTAAAATTCGGG</left_flank>
        <right_flank>AAAAAATTTCACACGATTTTTTGTGGTTCTCGGGATTTTTGTGAAAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCCTGTCAAAACGAGCAAAATAGTGTGTAAGACGAAGAGACGCAGACATTTTAGAGAGGTGTGCATAATAGATATGTACTCTATCACTCTTTTCTTACTTTCCGACGTCTTATCACCTCGGACGAGTTGTTGAACGAGAAGAGCAATGATTTTGAGTTGAACGGATCGTTTTGTTTTGTTTTTGATTTATTTCAATTGATGTCATTTACCTGGTCTAATTTCAATGCGCATTACGGTTGAAAATTCGAGCGAGGGAGGAGCTTAAATCCGGTGGCAAAACCTTTAAAGGAGCATGTATTTTTCGTGATTTTTTTCGCCATTTTTTTGTCGATTTTTTGAGGATTTTCGTTTTCGATAGCTTTCATCGTTGATATGCGATTTTTCTAAGATTAAGGTTTTCGAAGGTTTAAATTTCTAGATTTGTAAGATTCATTTTCTGGCAATGAGATTTATTATTTTAAAGTTCAAAGTCTATGAAATTTATCTAAAATTCGGGGAAAAAATTTCACACGATTTTTTGTGGTTCTCGGGATTTTTGTGAAAAAAAAATTCAAATCGAAATTCGTCAAAAATGGGTCGAAAAATAATTACGAAACGTAGATCTTGCGAAAAATAGATTGACCGAAGATCCGCCAACTATGAGCCAATATATGTATCTCGCGTTATTATAAAGATATCAGGTCAACTGACAAACTGTTTATCATAATATCAAGAATATTTTGTCAGTTGACCACATTTTGATATCTTTCACAAGGTCCGAGATATATGAGCTCAAATTTGGCAGATTGAGGTGACGGAGTGTTTATGGTACATTTATAGACTTCCAGGCATCTCATTTTTCTAGATTCCCATTCCCAAGGTTTTTCAATTAGAAGAAGTTATTGAAGTAAAAGAAAGTTCACTGAACACATGGTGCAAACTCATTGACCTTTTTCTGAATCTCCTCATCCGTGGATTTATTCTTGAACCACAGAGCGATTGCTCTTTACACCGTTCC</canonical>
            <polymorphic>TCTTCCTGTCAAAACGAGCAAAATAGTGTGTAAGACGAAGAGACGCAGACATTTTAGAGAGGTGTGCATAATAGATATGTACTCTATCACTCTTTTCTTACTTTCCGACGTCTTATCACCTCGGACGAGTTGTTGAACGAGAAGAGCAATGATTTTGAGTTGAACGGATCGTTTTGTTTTGTTTTTGATTTATTTCAATTGATGTCATTTACCTGGTCTAATTTCAATGCGCATTACGGTTGAAAATTCGAGCGAGGGAGGAGCTTAAATCCGGTGGCAAAACCTTTAAAGGAGCATGTATTTTTCGTGATTTTTTTCGCCATTTTTTTGTCGATTTTTTGAGGATTTTCGTTTTCGATAGCTTTCATCGTTGATATGCGATTTTTCTAAGATTAAGGTTTTCGAAGGTTTAAATTTCTAGATTTGTAAGATTCATTTTCTGGCAATGAGATTTATTATTTTAAAGTTCAAAGTCTATGAAATTTATCTAAAATTCGGGRAAAAAATTTCACACGATTTTTTGTGGTTCTCGGGATTTTTGTGAAAAAAAAATTCAAATCGAAATTCGTCAAAAATGGGTCGAAAAATAATTACGAAACGTAGATCTTGCGAAAAATAGATTGACCGAAGATCCGCCAACTATGAGCCAATATATGTATCTCGCGTTATTATAAAGATATCAGGTCAACTGACAAACTGTTTATCATAATATCAAGAATATTTTGTCAGTTGACCACATTTTGATATCTTTCACAAGGTCCGAGATATATGAGCTCAAATTTGGCAGATTGAGGTGACGGAGTGTTTATGGTACATTTATAGACTTCCAGGCATCTCATTTTTCTAGATTCCCATTCCCAAGGTTTTTCAATTAGAAGAAGTTATTGAAGTAAAAGAAAGTTCACTGAACACATGGTGCAAACTCATTGACCTTTTTCTGAATCTCCTCATCCGTGGATTTATTCTTGAACCACAGAGCGATTGCTCTTTACACCGTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGTTGATATGCGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCGCAAGATCTACGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATCGTTGATATGCGATTTTTCTAAGATTAAGGTTTTCGAAGGTTTAAATTTCTAGATTTGTAAGATTCATTTTCTGGCAATGAGATTTATTATTTTAAAGTTCAAAGTCTATGAAATTTATCTAAAATTCGGGGAAAAAATTTCACACGATTTTTTGTGGTTCTCGGGATTTTTGTGAAAAAAAAATTCAAATCGAAATTCGTCAAAAATGGGTCGAAAAATAATTACGAAACGTAGATCTTGCGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATCGTTGATATGCGATTTTTCTAAGATTAAGGTTTTCGAAGGTTTAAATTTCTAGATTTGTAAGATTCATTTTCTGGCAATGAGATTTATTATTTTAAAGTTCAAAGTCTATGAAATTTATCTAAAATTCGGGRAAAAAATTTCACACGATTTTTTGTGGTTCTCGGGATTTTTGTGAAAAAAAAATTCAAATCGAAATTCGTCAAAAATGGGTCGAAAAATAATTACGAAACGTAGATCTTGCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13890</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>88020</contig_pos>
        <strand>+</strand>
        <context>TAAAATTCGG[C/T/G/A]RAAAAAATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T/G/A</alleles>
        <left_flank>AGATTTATTATTTTAAAGTTCAAAGTCTATGAAATTTATCTAAAATTCGG</left_flank>
        <right_flank>GAAAAAATTTCACACGATTTTTTGTGGTTCTCGGGATTTTTGTGAAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTCCTGTCAAAACGAGCAAAATAGTGTGTAAGACGAAGAGACGCAGACATTTTAGAGAGGTGTGCATAATAGATATGTACTCTATCACTCTTTTCTTACTTTCCGACGTCTTATCACCTCGGACGAGTTGTTGAACGAGAAGAGCAATGATTTTGAGTTGAACGGATCGTTTTGTTTTGTTTTTGATTTATTTCAATTGATGTCATTTACCTGGTCTAATTTCAATGCGCATTACGGTTGAAAATTCGAGCGAGGGAGGAGCTTAAATCCGGTGGCAAAACCTTTAAAGGAGCATGTATTTTTCGTGATTTTTTTCGCCATTTTTTTGTCGATTTTTTGAGGATTTTCGTTTTCGATAGCTTTCATCGTTGATATGCGATTTTTCTAAGATTAAGGTTTTCGAAGGTTTAAATTTCTAGATTTGTAAGATTCATTTTCTGGCAATGAGATTTATTATTTTAAAGTTCAAAGTCTATGAAATTTATCTAAAATTCGGGGAAAAAATTTCACACGATTTTTTGTGGTTCTCGGGATTTTTGTGAAAAAAAAATTCAAATCGAAATTCGTCAAAAATGGGTCGAAAAATAATTACGAAACGTAGATCTTGCGAAAAATAGATTGACCGAAGATCCGCCAACTATGAGCCAATATATGTATCTCGCGTTATTATAAAGATATCAGGTCAACTGACAAACTGTTTATCATAATATCAAGAATATTTTGTCAGTTGACCACATTTTGATATCTTTCACAAGGTCCGAGATATATGAGCTCAAATTTGGCAGATTGAGGTGACGGAGTGTTTATGGTACATTTATAGACTTCCAGGCATCTCATTTTTCTAGATTCCCATTCCCAAGGTTTTTCAATTAGAAGAAGTTATTGAAGTAAAAGAAAGTTCACTGAACACATGGTGCAAACTCATTGACCTTTTTCTGAATCTCCTCATCCGTGGATTTATTCTTGAACCACAGAGCGATTGCTCTTTACACCGTTC</canonical>
            <polymorphic>TTCTTCCTGTCAAAACGAGCAAAATAGTGTGTAAGACGAAGAGACGCAGACATTTTAGAGAGGTGTGCATAATAGATATGTACTCTATCACTCTTTTCTTACTTTCCGACGTCTTATCACCTCGGACGAGTTGTTGAACGAGAAGAGCAATGATTTTGAGTTGAACGGATCGTTTTGTTTTGTTTTTGATTTATTTCAATTGATGTCATTTACCTGGTCTAATTTCAATGCGCATTACGGTTGAAAATTCGAGCGAGGGAGGAGCTTAAATCCGGTGGCAAAACCTTTAAAGGAGCATGTATTTTTCGTGATTTTTTTCGCCATTTTTTTGTCGATTTTTTGAGGATTTTCGTTTTCGATAGCTTTCATCGTTGATATGCGATTTTTCTAAGATTAAGGTTTTCGAAGGTTTAAATTTCTAGATTTGTAAGATTCATTTTCTGGCAATGAGATTTATTATTTTAAAGTTCAAAGTCTATGAAATTTATCTAAAATTCGGYGAAAAAATTTCACACGATTTTTTGTGGTTCTCGGGATTTTTGTGAAAAAAAAATTCAAATCGAAATTCGTCAAAAATGGGTCGAAAAATAATTACGAAACGTAGATCTTGCGAAAAATAGATTGACCGAAGATCCGCCAACTATGAGCCAATATATGTATCTCGCGTTATTATAAAGATATCAGGTCAACTGACAAACTGTTTATCATAATATCAAGAATATTTTGTCAGTTGACCACATTTTGATATCTTTCACAAGGTCCGAGATATATGAGCTCAAATTTGGCAGATTGAGGTGACGGAGTGTTTATGGTACATTTATAGACTTCCAGGCATCTCATTTTTCTAGATTCCCATTCCCAAGGTTTTTCAATTAGAAGAAGTTATTGAAGTAAAAGAAAGTTCACTGAACACATGGTGCAAACTCATTGACCTTTTTCTGAATCTCCTCATCCGTGGATTTATTCTTGAACCACAGAGCGATTGCTCTTTACACCGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGTTGATATGCGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCGCAAGATCTACGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATCGTTGATATGCGATTTTTCTAAGATTAAGGTTTTCGAAGGTTTAAATTTCTAGATTTGTAAGATTCATTTTCTGGCAATGAGATTTATTATTTTAAAGTTCAAAGTCTATGAAATTTATCTAAAATTCGGGGAAAAAATTTCACACGATTTTTTGTGGTTCTCGGGATTTTTGTGAAAAAAAAATTCAAATCGAAATTCGTCAAAAATGGGTCGAAAAATAATTACGAAACGTAGATCTTGCGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATCGTTGATATGCGATTTTTCTAAGATTAAGGTTTTCGAAGGTTTAAATTTCTAGATTTGTAAGATTCATTTTCTGGCAATGAGATTTATTATTTTAAAGTTCAAAGTCTATGAAATTTATCTAAAATTCGGYGAAAAAATTTCACACGATTTTTTGTGGTTCTCGGGATTTTTGTGAAAAAAAAATTCAAATCGAAATTCGTCAAAAATGGGTCGAAAAATAATTACGAAACGTAGATCTTGCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13891</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>87955</contig_pos>
        <strand>+</strand>
        <context>TTGTAAGATT[C/T]ATTTTCTGGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCTAAGATTAAGGTTTTCGAAGGTTTAAATTTCTAGATTTGTAAGATT</left_flank>
        <right_flank>ATTTTCTGGCAATGAGATTTATTATTTTAAAGTTCAAAGTCTATGAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATTTCCTTCTCTTGTCAGTTCTCGTCCAAAACGAGAATATTTGTGTGTGCTCGACCACACCTCTTCTTCCTGTCAAAACGAGCAAAATAGTGTGTAAGACGAAGAGACGCAGACATTTTAGAGAGGTGTGCATAATAGATATGTACTCTATCACTCTTTTCTTACTTTCCGACGTCTTATCACCTCGGACGAGTTGTTGAACGAGAAGAGCAATGATTTTGAGTTGAACGGATCGTTTTGTTTTGTTTTTGATTTATTTCAATTGATGTCATTTACCTGGTCTAATTTCAATGCGCATTACGGTTGAAAATTCGAGCGAGGGAGGAGCTTAAATCCGGTGGCAAAACCTTTAAAGGAGCATGTATTTTTCGTGATTTTTTTCGCCATTTTTTTGTCGATTTTTTGAGGATTTTCGTTTTCGATAGCTTTCATCGTTGATATGCGATTTTTCTAAGATTAAGGTTTTCGAAGGTTTAAATTTCTAGATTTGTAAGATTCATTTTCTGGCAATGAGATTTATTATTTTAAAGTTCAAAGTCTATGAAATTTATCTAAAATTCGGGGAAAAAATTTCACACGATTTTTTGTGGTTCTCGGGATTTTTGTGAAAAAAAAATTCAAATCGAAATTCGTCAAAAATGGGTCGAAAAATAATTACGAAACGTAGATCTTGCGAAAAATAGATTGACCGAAGATCCGCCAACTATGAGCCAATATATGTATCTCGCGTTATTATAAAGATATCAGGTCAACTGACAAACTGTTTATCATAATATCAAGAATATTTTGTCAGTTGACCACATTTTGATATCTTTCACAAGGTCCGAGATATATGAGCTCAAATTTGGCAGATTGAGGTGACGGAGTGTTTATGGTACATTTATAGACTTCCAGGCATCTCATTTTTCTAGATTCCCATTCCCAAGGTTTTTCAATTAGAAGAAGTTATTGAAGTAAAAGAAAGTTCACTGAACACATGGTGCAAACTCATTGACCTT</canonical>
            <polymorphic>TTATTTCCTTCTCTTGTCAGTTCTCGTCCAAAACGAGAATATTTGTGTGTGCTCGACCACACCTCTTCTTCCTGTCAAAACGAGCAAAATAGTGTGTAAGACGAAGAGACGCAGACATTTTAGAGAGGTGTGCATAATAGATATGTACTCTATCACTCTTTTCTTACTTTCCGACGTCTTATCACCTCGGACGAGTTGTTGAACGAGAAGAGCAATGATTTTGAGTTGAACGGATCGTTTTGTTTTGTTTTTGATTTATTTCAATTGATGTCATTTACCTGGTCTAATTTCAATGCGCATTACGGTTGAAAATTCGAGCGAGGGAGGAGCTTAAATCCGGTGGCAAAACCTTTAAAGGAGCATGTATTTTTCGTGATTTTTTTCGCCATTTTTTTGTCGATTTTTTGAGGATTTTCGTTTTCGATAGCTTTCATCGTTGATATGCGATTTTTCTAAGATTAAGGTTTTCGAAGGTTTAAATTTCTAGATTTGTAAGATTYATTTTCTGGCAATGAGATTTATTATTTTAAAGTTCAAAGTCTATGAAATTTATCTAAAATTCGGGGAAAAAATTTCACACGATTTTTTGTGGTTCTCGGGATTTTTGTGAAAAAAAAATTCAAATCGAAATTCGTCAAAAATGGGTCGAAAAATAATTACGAAACGTAGATCTTGCGAAAAATAGATTGACCGAAGATCCGCCAACTATGAGCCAATATATGTATCTCGCGTTATTATAAAGATATCAGGTCAACTGACAAACTGTTTATCATAATATCAAGAATATTTTGTCAGTTGACCACATTTTGATATCTTTCACAAGGTCCGAGATATATGAGCTCAAATTTGGCAGATTGAGGTGACGGAGTGTTTATGGTACATTTATAGACTTCCAGGCATCTCATTTTTCTAGATTCCCATTCCCAAGGTTTTTCAATTAGAAGAAGTTATTGAAGTAAAAGAAAGTTCACTGAACACATGGTGCAAACTCATTGACCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>496 417 87</canonical_bands>
                <polymorphic_bands>913 87</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>496 417 87</canonical_bands>
                <polymorphic_bands>913 87</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCGTTGATATGCGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCGCAAGATCTACGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATCGTTGATATGCGATTTTTCTAAGATTAAGGTTTTCGAAGGTTTAAATTTCTAGATTTGTAAGATTCATTTTCTGGCAATGAGATTTATTATTTTAAAGTTCAAAGTCTATGAAATTTATCTAAAATTCGGGGAAAAAATTTCACACGATTTTTTGTGGTTCTCGGGATTTTTGTGAAAAAAAAATTCAAATCGAAATTCGTCAAAAATGGGTCGAAAAATAATTACGAAACGTAGATCTTGCGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATCGTTGATATGCGATTTTTCTAAGATTAAGGTTTTCGAAGGTTTAAATTTCTAGATTTGTAAGATTYATTTTCTGGCAATGAGATTTATTATTTTAAAGTTCAAAGTCTATGAAATTTATCTAAAATTCGGGGAAAAAATTTCACACGATTTTTTGTGGTTCTCGGGATTTTTGTGAAAAAAAAATTCAAATCGAAATTCGTCAAAAATGGGTCGAAAAATAATTACGAAACGTAGATCTTGCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13892</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>88402</contig_pos>
        <strand>+</strand>
        <context>ATTAGAAGAA[G/T]TTATTGAAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCATCTCATTTTTCTAGATTCCCATTCCCAAGGTTTTTCAATTAGAAGAA</left_flank>
        <right_flank>TTATTGAAGTAAAAGAAAGTTCACTGAACACATGGTGCAAACTCATTGAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCTAAGATTAAGGTTTTCGAAGGTTTAAATTTCTAGATTTGTAAGATTCATTTTCTGGCAATGAGATTTATTATTTTAAAGTTCAAAGTCTATGAAATTTATCTAAAATTCGGGGAAAAAATTTCACACGATTTTTTGTGGTTCTCGGGATTTTTGTGAAAAAAAAATTCAAATCGAAATTCGTCAAAAATGGGTCGAAAAATAATTACGAAACGTAGATCTTGCGAAAAATAGATTGACCGAAGATCCGCCAACTATGAGCCAATATATGTATCTCGCGTTATTATAAAGATATCAGGTCAACTGACAAACTGTTTATCATAATATCAAGAATATTTTGTCAGTTGACCACATTTTGATATCTTTCACAAGGTCCGAGATATATGAGCTCAAATTTGGCAGATTGAGGTGACGGAGTGTTTATGGTACATTTATAGACTTCCAGGCATCTCATTTTTCTAGATTCCCATTCCCAAGGTTTTTCAATTAGAAGAAGTTATTGAAGTAAAAGAAAGTTCACTGAACACATGGTGCAAACTCATTGACCTTTTTCTGAATCTCCTCATCCGTGGATTTATTCTTGAACCACAGAGCGATTGCTCTTTACACCGTTCCATATTGCTCCGCATTCTCAATGAGACCACATCTTTGTCCTCTCAACTTGTCTACAATCTCTTTCGGATTCACTTCTTTTCCCTTTTAAACATGAAGCATTGAAGTGAAAAGAGCAAGCATCGTTCCAGCACGACCCATTCCGCTCATACTCATCATCACTGTGTTCTAAATTTTTTCAAATTTAATTTTTAAAATTTCAAAAGAACACTCACCTCATTAGTCTTGAGAACCTTCTCAACTGTAGAAACCAGGTCTCCAACATTATCCAATCCTCTCTTCTGCTTCCAGTTATGAAGATGATAGACTGTGGTAAACAAGGAATTCGAGCATTCGTCTGGCAGAATCTCCAATGTGTAAGCAGTCATGGCAACCGTTGAATCA</canonical>
            <polymorphic>TTTTTCTAAGATTAAGGTTTTCGAAGGTTTAAATTTCTAGATTTGTAAGATTCATTTTCTGGCAATGAGATTTATTATTTTAAAGTTCAAAGTCTATGAAATTTATCTAAAATTCGGGGAAAAAATTTCACACGATTTTTTGTGGTTCTCGGGATTTTTGTGAAAAAAAAATTCAAATCGAAATTCGTCAAAAATGGGTCGAAAAATAATTACGAAACGTAGATCTTGCGAAAAATAGATTGACCGAAGATCCGCCAACTATGAGCCAATATATGTATCTCGCGTTATTATAAAGATATCAGGTCAACTGACAAACTGTTTATCATAATATCAAGAATATTTTGTCAGTTGACCACATTTTGATATCTTTCACAAGGTCCGAGATATATGAGCTCAAATTTGGCAGATTGAGGTGACGGAGTGTTTATGGTACATTTATAGACTTCCAGGCATCTCATTTTTCTAGATTCCCATTCCCAAGGTTTTTCAATTAGAAGAAKTTATTGAAGTAAAAGAAAGTTCACTGAACACATGGTGCAAACTCATTGACCTTTTTCTGAATCTCCTCATCCGTGGATTTATTCTTGAACCACAGAGCGATTGCTCTTTACACCGTTCCATATTGCTCCGCATTCTCAATGAGACCACATCTTTGTCCTCTCAACTTGTCTACAATCTCTTTCGGATTCACTTCTTTTCCCTTTTAAACATGAAGCATTGAAGTGAAAAGAGCAAGCATCGTTCCAGCACGACCCATTCCGCTCATACTCATCATCACTGTGTTCTAAATTTTTTCAAATTTAATTTTTAAAATTTCAAAAGAACACTCACCTCATTAGTCTTGAGAACCTTCTCAACTGTAGAAACCAGGTCTCCAACATTATCCAATCCTCTCTTCTGCTTCCAGTTATGAAGATGATAGACTGTGGTAAACAAGGAATTCGAGCATTCGTCTGGCAGAATCTCCAATGTGTAAGCAGTCATGGCAACCGTTGAATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTATAGACTTCCAGGCATCTC</pcr_primer_p1>
		<pcr_primer_p2>AGATTGTAGACAAGTTGAGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATTTATAGACTTCCAGGCATCTCATTTTTCTAGATTCCCATTCCCAAGGTTTTTCAATTAGAAGAAGTTATTGAAGTAAAAGAAAGTTCACTGAACACATGGTGCAAACTCATTGACCTTTTTCTGAATCTCCTCATCCGTGGATTTATTCTTGAACCACAGAGCGATTGCTCTTTACACCGTTCCATATTGCTCCGCATTCTCAATGAGACCACATCTTTGTCCTCTCAACTTGTCTACAATCT</canonical_amplicon>
		<polymorphic_amplicon>ATTTATAGACTTCCAGGCATCTCATTTTTCTAGATTCCCATTCCCAAGGTTTTTCAATTAGAAGAAKTTATTGAAGTAAAAGAAAGTTCACTGAACACATGGTGCAAACTCATTGACCTTTTTCTGAATCTCCTCATCCGTGGATTTATTCTTGAACCACAGAGCGATTGCTCTTTACACCGTTCCATATTGCTCCGCATTCTCAATGAGACCACATCTTTGTCCTCTCAACTTGTCTACAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13893</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>88389</contig_pos>
        <strand>+</strand>
        <context>CCAAGGTTTT[C/T]CAATTAGAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATAGACTTCCAGGCATCTCATTTTTCTAGATTCCCATTCCCAAGGTTTT</left_flank>
        <right_flank>CAATTAGAAGAAGTTATTGAAGTAAAAGAAAGTTCACTGAACACATGGTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTTGATATGCGATTTTTCTAAGATTAAGGTTTTCGAAGGTTTAAATTTCTAGATTTGTAAGATTCATTTTCTGGCAATGAGATTTATTATTTTAAAGTTCAAAGTCTATGAAATTTATCTAAAATTCGGGGAAAAAATTTCACACGATTTTTTGTGGTTCTCGGGATTTTTGTGAAAAAAAAATTCAAATCGAAATTCGTCAAAAATGGGTCGAAAAATAATTACGAAACGTAGATCTTGCGAAAAATAGATTGACCGAAGATCCGCCAACTATGAGCCAATATATGTATCTCGCGTTATTATAAAGATATCAGGTCAACTGACAAACTGTTTATCATAATATCAAGAATATTTTGTCAGTTGACCACATTTTGATATCTTTCACAAGGTCCGAGATATATGAGCTCAAATTTGGCAGATTGAGGTGACGGAGTGTTTATGGTACATTTATAGACTTCCAGGCATCTCATTTTTCTAGATTCCCATTCCCAAGGTTTTTCAATTAGAAGAAGTTATTGAAGTAAAAGAAAGTTCACTGAACACATGGTGCAAACTCATTGACCTTTTTCTGAATCTCCTCATCCGTGGATTTATTCTTGAACCACAGAGCGATTGCTCTTTACACCGTTCCATATTGCTCCGCATTCTCAATGAGACCACATCTTTGTCCTCTCAACTTGTCTACAATCTCTTTCGGATTCACTTCTTTTCCCTTTTAAACATGAAGCATTGAAGTGAAAAGAGCAAGCATCGTTCCAGCACGACCCATTCCGCTCATACTCATCATCACTGTGTTCTAAATTTTTTCAAATTTAATTTTTAAAATTTCAAAAGAACACTCACCTCATTAGTCTTGAGAACCTTCTCAACTGTAGAAACCAGGTCTCCAACATTATCCAATCCTCTCTTCTGCTTCCAGTTATGAAGATGATAGACTGTGGTAAACAAGGAATTCGAGCATTCGTCTGGCAGAATCTCCAATGTGTAAGCAGTCATGGC</canonical>
            <polymorphic>CGTTGATATGCGATTTTTCTAAGATTAAGGTTTTCGAAGGTTTAAATTTCTAGATTTGTAAGATTCATTTTCTGGCAATGAGATTTATTATTTTAAAGTTCAAAGTCTATGAAATTTATCTAAAATTCGGGGAAAAAATTTCACACGATTTTTTGTGGTTCTCGGGATTTTTGTGAAAAAAAAATTCAAATCGAAATTCGTCAAAAATGGGTCGAAAAATAATTACGAAACGTAGATCTTGCGAAAAATAGATTGACCGAAGATCCGCCAACTATGAGCCAATATATGTATCTCGCGTTATTATAAAGATATCAGGTCAACTGACAAACTGTTTATCATAATATCAAGAATATTTTGTCAGTTGACCACATTTTGATATCTTTCACAAGGTCCGAGATATATGAGCTCAAATTTGGCAGATTGAGGTGACGGAGTGTTTATGGTACATTTATAGACTTCCAGGCATCTCATTTTTCTAGATTCCCATTCCCAAGGTTTTYCAATTAGAAGAAGTTATTGAAGTAAAAGAAAGTTCACTGAACACATGGTGCAAACTCATTGACCTTTTTCTGAATCTCCTCATCCGTGGATTTATTCTTGAACCACAGAGCGATTGCTCTTTACACCGTTCCATATTGCTCCGCATTCTCAATGAGACCACATCTTTGTCCTCTCAACTTGTCTACAATCTCTTTCGGATTCACTTCTTTTCCCTTTTAAACATGAAGCATTGAAGTGAAAAGAGCAAGCATCGTTCCAGCACGACCCATTCCGCTCATACTCATCATCACTGTGTTCTAAATTTTTTCAAATTTAATTTTTAAAATTTCAAAAGAACACTCACCTCATTAGTCTTGAGAACCTTCTCAACTGTAGAAACCAGGTCTCCAACATTATCCAATCCTCTCTTCTGCTTCCAGTTATGAAGATGATAGACTGTGGTAAACAAGGAATTCGAGCATTCGTCTGGCAGAATCTCCAATGTGTAAGCAGTCATGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTATAGACTTCCAGGCATCTC</pcr_primer_p1>
		<pcr_primer_p2>AGATTGTAGACAAGTTGAGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATTTATAGACTTCCAGGCATCTCATTTTTCTAGATTCCCATTCCCAAGGTTTTTCAATTAGAAGAAGTTATTGAAGTAAAAGAAAGTTCACTGAACACATGGTGCAAACTCATTGACCTTTTTCTGAATCTCCTCATCCGTGGATTTATTCTTGAACCACAGAGCGATTGCTCTTTACACCGTTCCATATTGCTCCGCATTCTCAATGAGACCACATCTTTGTCCTCTCAACTTGTCTACAATCT</canonical_amplicon>
		<polymorphic_amplicon>ATTTATAGACTTCCAGGCATCTCATTTTTCTAGATTCCCATTCCCAAGGTTTTYCAATTAGAAGAAGTTATTGAAGTAAAAGAAAGTTCACTGAACACATGGTGCAAACTCATTGACCTTTTTCTGAATCTCCTCATCCGTGGATTTATTCTTGAACCACAGAGCGATTGCTCTTTACACCGTTCCATATTGCTCCGCATTCTCAATGAGACCACATCTTTGTCCTCTCAACTTGTCTACAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13894</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>93561</contig_pos>
        <strand></strand>
        <context>CAAGTCAACA[C/T]ACAAAAAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTCTCTCTGATTTCAATTCTATTTCTTCCAACTTTGTTCAAGTCAACA</left_flank>
        <right_flank>ACAAAAAATAAGAGAAAGGAGAACGGAGATGATTGGAATTGAATTGCAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTTGAAAATTTAAGGAATTTGAGAGTTCGAGAAATTGTTGACCCAACTTTAGTTTTGTTTCTTCGGCTTCTAAAATTGGTAAGTCTAGGTTTAGGAGTCTAAAATGGATACGATGGTCCGGTAATGTGACCCGATTTGTTATCTAGGAAAATTATCCGTAGACAGTTTTCCTTGAATTACATATTTTCGAATCTTTTATTTTGGAATCCGACTCAACCCTTTAAATAGTATTTCCTCTTTTCTAAATTTCATTCTACATACAAATAATACTACTGACCACTTCCAACCTTTGTTGCCACTTTTCTATTCTATACTTGTTCGAAATCAGCTAATATAAACCTCTTTCTCCTCTCTCCCTGTTTCCCAACCGTACCCACTTTTCACATAATTATGCGCAACATTATACCTGTCTCTCTCTTTGAACGTATAGTTTTAGTCTATTCTAGACTTTCTCTCTGATTTCAATTCTATTTCTTCCAACTTTGTTCAAGTCAACACACAAAAAATAAGAGAAAGGAGAACGGAGATGATTGGAATTGAATTGCAGAACCACTGCCGTTGAGAGTGCAACTACGGAAGATACAACGTCATTGGCCTTCTCTTCTACACCTCCAGAAGACGTCATGCCACCGGTAAATTTCATTGTTTTTGAATTAATTAATCAAATTATTGGATTCAGAGAAAAGGAAGTATTGCTCAAACCAGTGTAATTCATTATTCTCCACCGGGTACTGTACGTGCTTCGTTACCACCGTCAGCCACGTCATCCGTGGTGTCTGGAGGATCAGATGAGAGTGGAACAGTGGTGATAACCAGGAAAAGCAACATTGTTTTGGATGATGAAGAATCGTGAGTGACAGAAAAAGCTTGCTGTAAAACTTGTAATAGAAGGGCTCCCAGCCTGTCAAGTTTTAGCTCAATCACCGTATTTCCTCTAATAGAAGCCCACTCAACTTTGAGCTTAATTATCTCGATTCCTGTGAAAGACATCAAAACGC</canonical>
            <polymorphic>AGTTTGAAAATTTAAGGAATTTGAGAGTTCGAGAAATTGTTGACCCAACTTTAGTTTTGTTTCTTCGGCTTCTAAAATTGGTAAGTCTAGGTTTAGGAGTCTAAAATGGATACGATGGTCCGGTAATGTGACCCGATTTGTTATCTAGGAAAATTATCCGTAGACAGTTTTCCTTGAATTACATATTTTCGAATCTTTTATTTTGGAATCCGACTCAACCCTTTAAATAGTATTTCCTCTTTTCTAAATTTCATTCTACATACAAATAATACTACTGACCACTTCCAACCTTTGTTGCCACTTTTCTATTCTATACTTGTTCGAAATCAGCTAATATAAACCTCTTTCTCCTCTCTCCCTGTTTCCCAACCGTACCCACTTTTCACATAATTATGCGCAACATTATACCTGTCTCTCTCTTTGAACGTATAGTTTTAGTCTATTCTAGACTTTCTCTCTGATTTCAATTCTATTTCTTCCAACTTTGTTCAAGTCAACAYACAAAAAATAAGAGAAAGGAGAACGGAGATGATTGGAATTGAATTGCAGAACCACTGCCGTTGAGAGTGCAACTACGGAAGATACAACGTCATTGGCCTTCTCTTCTACACCTCCAGAAGACGTCATGCCACCGGTAAATTTCATTGTTTTTGAATTAATTAATCAAATTATTGGATTCAGAGAAAAGGAAGTATTGCTCAAACCAGTGTAATTCATTATTCTCCACCGGGTACTGTACGTGCTTCGTTACCACCGTCAGCCACGTCATCCGTGGTGTCTGGAGGATCAGATGAGAGTGGAACAGTGGTGATAACCAGGAAAAGCAACATTGTTTTGGATGATGAAGAATCGTGAGTGACAGAAAAAGCTTGCTGTAAAACTTGTAATAGAAGGGCTCCCAGCCTGTCAAGTTTTAGCTCAATCACCGTATTTCCTCTAATAGAAGCCCACTCAACTTTGAGCTTAATTATCTCGATTCCTGTGAAAGACATCAAAACGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>151 130 114 78 78 67 53 44 41 34 25 22 21 19 17 16 16 15 11 11 10 8 7 4 3 3 2</canonical_bands>
                <polymorphic_bands>169 151 130 78 78 67 44 41 34 25 22 21 19 17 16 16 15 11 11 10 8 7 4 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAACCTCTTTCTCCTCTCTCC</pcr_primer_p1>
		<pcr_primer_p2>GTATCTTCCGTAGTTGCACTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAAACCTCTTTCTCCTCTCTCCCTGTTTCCCAACCGTACCCACTTTTCACATAATTATGCGCAACATTATACCTGTCTCTCTCTTTGAACGTATAGTTTTAGTCTATTCTAGACTTTCTCTCTGATTTCAATTCTATTTCTTCCAACTTTGTTCAAGTCAACACACAAAAAATAAGAGAAAGGAGAACGGAGATGATTGGAATTGAATTGCAGAACCACTGCCGTTGAGAGTGCAACTACGGAAGATAC</canonical_amplicon>
		<polymorphic_amplicon>TAAACCTCTTTCTCCTCTCTCCCTGTTTCCCAACCGTACCCACTTTTCACATAATTATGCGCAACATTATACCTGTCTCTCTCTTTGAACGTATAGTTTTAGTCTATTCTAGACTTTCTCTCTGATTTCAATTCTATTTCTTCCAACTTTGTTCAAGTCAACAYACAAAAAATAAGAGAAAGGAGAACGGAGATGATTGGAATTGAATTGCAGAACCACTGCCGTTGAGAGTGCAACTACGGAAGATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13895</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>93614</contig_pos>
        <strand></strand>
        <context>ATTGCAGAAC[C/G]ACTGCCGTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAAAATAAGAGAAAGGAGAACGGAGATGATTGGAATTGAATTGCAGAAC</left_flank>
        <right_flank>ACTGCCGTTGAGAGTGCAACTACGGAAGATACAACGTCATTGGCCTTCTC</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTGTTTCTTCGGCTTCTAAAATTGGTAAGTCTAGGTTTAGGAGTCTAAAATGGATACGATGGTCCGGTAATGTGACCCGATTTGTTATCTAGGAAAATTATCCGTAGACAGTTTTCCTTGAATTACATATTTTCGAATCTTTTATTTTGGAATCCGACTCAACCCTTTAAATAGTATTTCCTCTTTTCTAAATTTCATTCTACATACAAATAATACTACTGACCACTTCCAACCTTTGTTGCCACTTTTCTATTCTATACTTGTTCGAAATCAGCTAATATAAACCTCTTTCTCCTCTCTCCCTGTTTCCCAACCGTACCCACTTTTCACATAATTATGCGCAACATTATACCTGTCTCTCTCTTTGAACGTATAGTTTTAGTCTATTCTAGACTTTCTCTCTGATTTCAATTCTATTTCTTCCAACTTTGTTCAAGTCAACACACAAAAAATAAGAGAAAGGAGAACGGAGATGATTGGAATTGAATTGCAGAACCACTGCCGTTGAGAGTGCAACTACGGAAGATACAACGTCATTGGCCTTCTCTTCTACACCTCCAGAAGACGTCATGCCACCGGTAAATTTCATTGTTTTTGAATTAATTAATCAAATTATTGGATTCAGAGAAAAGGAAGTATTGCTCAAACCAGTGTAATTCATTATTCTCCACCGGGTACTGTACGTGCTTCGTTACCACCGTCAGCCACGTCATCCGTGGTGTCTGGAGGATCAGATGAGAGTGGAACAGTGGTGATAACCAGGAAAAGCAACATTGTTTTGGATGATGAAGAATCGTGAGTGACAGAAAAAGCTTGCTGTAAAACTTGTAATAGAAGGGCTCCCAGCCTGTCAAGTTTTAGCTCAATCACCGTATTTCCTCTAATAGAAGCCCACTCAACTTTGAGCTTAATTATCTCGATTCCTGTGAAAGACATCAAAACGCAGTCAACTGCCATAATATTTATCATTTTATCAACAATATTTTATCAGTTGGTT</canonical>
            <polymorphic>GTTTTGTTTCTTCGGCTTCTAAAATTGGTAAGTCTAGGTTTAGGAGTCTAAAATGGATACGATGGTCCGGTAATGTGACCCGATTTGTTATCTAGGAAAATTATCCGTAGACAGTTTTCCTTGAATTACATATTTTCGAATCTTTTATTTTGGAATCCGACTCAACCCTTTAAATAGTATTTCCTCTTTTCTAAATTTCATTCTACATACAAATAATACTACTGACCACTTCCAACCTTTGTTGCCACTTTTCTATTCTATACTTGTTCGAAATCAGCTAATATAAACCTCTTTCTCCTCTCTCCCTGTTTCCCAACCGTACCCACTTTTCACATAATTATGCGCAACATTATACCTGTCTCTCTCTTTGAACGTATAGTTTTAGTCTATTCTAGACTTTCTCTCTGATTTCAATTCTATTTCTTCCAACTTTGTTCAAGTCAACACACAAAAAATAAGAGAAAGGAGAACGGAGATGATTGGAATTGAATTGCAGAACSACTGCCGTTGAGAGTGCAACTACGGAAGATACAACGTCATTGGCCTTCTCTTCTACACCTCCAGAAGACGTCATGCCACCGGTAAATTTCATTGTTTTTGAATTAATTAATCAAATTATTGGATTCAGAGAAAAGGAAGTATTGCTCAAACCAGTGTAATTCATTATTCTCCACCGGGTACTGTACGTGCTTCGTTACCACCGTCAGCCACGTCATCCGTGGTGTCTGGAGGATCAGATGAGAGTGGAACAGTGGTGATAACCAGGAAAAGCAACATTGTTTTGGATGATGAAGAATCGTGAGTGACAGAAAAAGCTTGCTGTAAAACTTGTAATAGAAGGGCTCCCAGCCTGTCAAGTTTTAGCTCAATCACCGTATTTCCTCTAATAGAAGCCCACTCAACTTTGAGCTTAATTATCTCGATTCCTGTGAAAGACATCAAAACGCAGTCAACTGCCATAATATTTATCATTTTATCAACAATATTTTATCAGTTGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>151 114 78 78 77 69 67 53 44 41 34 25 22 21 19 17 16 15 11 11 10 8 7 4 3 3 2</canonical_bands>
                <polymorphic_bands>151 114 78 78 77 69 68 67 44 41 34 25 22 21 19 17 16 11 11 10 8 7 4 3 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAATTCTATTTCTTCCAACTTT</pcr_primer_p1>
		<pcr_primer_p2>TTACACTGGTTTGAGCAATACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCAATTCTATTTCTTCCAACTTTGTTCAAGTCAACACACAAAAAATAAGAGAAAGGAGAACGGAGATGATTGGAATTGAATTGCAGAACCACTGCCGTTGAGAGTGCAACTACGGAAGATACAACGTCATTGGCCTTCTCTTCTACACCTCCAGAAGACGTCATGCCACCGGTAAATTTCATTGTTTTTGAATTAATTAATCAAATTATTGGATTCAGAGAAAAGGAAGTATTGCTCAAACCAGTGTAA</canonical_amplicon>
		<polymorphic_amplicon>TTCAATTCTATTTCTTCCAACTTTGTTCAAGTCAACACACAAAAAATAAGAGAAAGGAGAACGGAGATGATTGGAATTGAATTGCAGAACSACTGCCGTTGAGAGTGCAACTACGGAAGATACAACGTCATTGGCCTTCTCTTCTACACCTCCAGAAGACGTCATGCCACCGGTAAATTTCATTGTTTTTGAATTAATTAATCAAATTATTGGATTCAGAGAAAAGGAAGTATTGCTCAAACCAGTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb13927</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>97786</contig_pos>
        <strand>+</strand>
        <context>GGAAAAAAAC[A/T]TATTCGATAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTTTTTCGGAAAAAAAACTTAAAATTTGGAATTTTTCGGAAAAAAAC</left_flank>
        <right_flank>TATTCGATAACTCTGAAATTGAGAATTTTCGGACTACAAAACAATTTTAG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTAGAAAGATCAGGAATCTCTCTTGGAAAGGTCGTGGACACTGAGCCATCATCAAATCATCCAACATCAACTCCTCCACCTCCTCCGCCTCCGCCCCAACCTGTTCTTGCCTCGCCGGCTCTTCAACCGATTGCATCTAAAAATCCAGATTTGAGGGATTCATTGATGAGTGAAATCCGGGAAGCTGGAAGGTTACGTGCCGCTCGTGCAGCTCAATCTGCTTAATTAAAAACATATGAAAAATGAATCAAACTGGTTATAATTATTTCGTTGTCAACCTATTTTATCCATCCCATATTGTTTTTTTTATATCTTCTTATTGAGTAAACTATTGGAAATCATTTTCAAAATTGATTATTATTGAGATCTCAAAGTAACATAAATTTTCAAAATGTTCCAATATCATTGATCCTGTCACATTCTGAAATTAGAAAAAATTTAAAAAATAATTTTTTTCGGAAAAAAAACTTAAAATTTGGAATTTTTCGGAAAAAAACTTATTCGATAACTCTGAAATTGAGAATTTTCGGACTACAAAACAATTTTAGCGTTTTCAAATATGCCTTTTCGGATAGAATCTAAGAAAGTAAAAAAATATTTTATTGAAAAAATCCAAAAAACATTTTTTTAAAGATTTAAATTTGTAAAAAATTTAAATTTGGAATTCTATGAATTTCAGAATGTGTTCAAACAGAAAAAAAACATATTTAAAAAGCCTAAGATTTATATGTCCCAGAGCCGACTTCAGGATAAACCAAAGTGTTTTCTAAATGTGAATCAGATATGAACCATTAAAAAACTGTTACTACGGTTATTCAATTCACTGGAATATATGTACTACTATTCTCCAATCAACTGGTTTTTAAAAAGTTTTAAAAGACTTTTTGTTATCAAGACAGGAAACGTATCATGTGTTTGAACAGCTGATAAATACTCCTTTTGTATTGACATTGTTTTTCGTTTTTCTTACAGCACCCATCACTGTAATTCCCACAGTA</canonical>
            <polymorphic>CAGTAGAAAGATCAGGAATCTCTCTTGGAAAGGTCGTGGACACTGAGCCATCATCAAATCATCCAACATCAACTCCTCCACCTCCTCCGCCTCCGCCCCAACCTGTTCTTGCCTCGCCGGCTCTTCAACCGATTGCATCTAAAAATCCAGATTTGAGGGATTCATTGATGAGTGAAATCCGGGAAGCTGGAAGGTTACGTGCCGCTCGTGCAGCTCAATCTGCTTAATTAAAAACATATGAAAAATGAATCAAACTGGTTATAATTATTTCGTTGTCAACCTATTTTATCCATCCCATATTGTTTTTTTTATATCTTCTTATTGAGTAAACTATTGGAAATCATTTTCAAAATTGATTATTATTGAGATCTCAAAGTAACATAAATTTTCAAAATGTTCCAATATCATTGATCCTGTCACATTCTGAAATTAGAAAAAATTTAAAAAATAATTTTTTTCGGAAAAAAAACTTAAAATTTGGAATTTTTCGGAAAAAAACWTATTCGATAACTCTGAAATTGAGAATTTTCGGACTACAAAACAATTTTAGCGTTTTCAAATATGCCTTTTCGGATAGAATCTAAGAAAGTAAAAAAATATTTTATTGAAAAAATCCAAAAAACATTTTTTTAAAGATTTAAATTTGTAAAAAATTTAAATTTGGAATTCTATGAATTTCAGAATGTGTTCAAACAGAAAAAAAACATATTTAAAAAGCCTAAGATTTATATGTCCCAGAGCCGACTTCAGGATAAACCAAAGTGTTTTCTAAATGTGAATCAGATATGAACCATTAAAAAACTGTTACTACGGTTATTCAATTCACTGGAATATATGTACTACTATTCTCCAATCAACTGGTTTTTAAAAAGTTTTAAAAGACTTTTTGTTATCAAGACAGGAAACGTATCATGTGTTTGAACAGCTGATAAATACTCCTTTTGTATTGACATTGTTTTTCGTTTTTCTTACAGCACCCATCACTGTAATTCCCACAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTATTGAGTAAACTATTGGAAATCA</pcr_primer_p1>
		<pcr_primer_p2>CATATTTGAAAACGCTAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTTATTGAGTAAACTATTGGAAATCATTTTCAAAATTGATTATTATTGAGATCTCAAAGTAACATAAATTTTCAAAATGTTCCAATATCATTGATCCTGTCACATTCTGAAATTAGAAAAAATTTAAAAAATAATTTTTTTCGGAAAAAAAACTTAAAATTTGGAATTTTTCGGAAAAAAACTTATTCGATAACTCTGAAATTGAGAATTTTCGGACTACAAAACAATTTTAGCGTTTTCAAATATG</canonical_amplicon>
		<polymorphic_amplicon>CTTATTGAGTAAACTATTGGAAATCATTTTCAAAATTGATTATTATTGAGATCTCAAAGTAACATAAATTTTCAAAATGTTCCAATATCATTGATCCTGTCACATTCTGAAATTAGAAAAAATTTAAAAAATAATTTTTTTCGGAAAAAAAACTTAAAATTTGGAATTTTTCGGAAAAAAACWTATTCGATAACTCTGAAATTGAGAATTTTCGGACTACAAAACAATTTTAGCGTTTTCAAATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14002</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>100298</contig_pos>
        <strand>+</strand>
        <context>CATTCTGAAA[G/T]CTTCATTGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCAACCGCCGCAGCATTTTATGGTAAGTGTTTCTTTTTCTCATTCTGAAA</left_flank>
        <right_flank>CTTCATTGTTTACTACAGTAGTAATTTAGACTTGCTAGAATATAATAGCG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAGCCAATGCAACAGGGTCCACCGCCTCAGAACCACCAGAATCCGAATGAGCAACAGTTCGTTTCGCCACCACAAATGGGTGGAATGGGTGGACCGATGAGAATGCAGATGCAGCAACCGAGTGAGGCTTAAAAGATATATCTGAAAATAATGCGAATTCATGCTTTCAGTGCGCCAAATGCCCTACCCACCACCTCAAATGCGCGGCCAAGGACCTCCTCAGCACTTTTCTCCGATGGGAATGCCACCGCAACAACAACAGTTCACTCCAAGTGGGCAACCAATTCAGATGGGACAACGTCCAATGCAACAGCCAAATCAAGGGGGCCAAATGCCAATGGGAATGTCTGGGGTATAATGTTGTTGAAGAGGCTTCTGGTAATAATGTTCTAATTATTTCAGCCAGTGCCAATGGGGATGGTCAGTGGACCACCACAGCACGGAATTCAACCGCCGCAGCATTTTATGGTAAGTGTTTCTTTTTCTCATTCTGAAATCTTCATTGTTTACTACAGTAGTAATTTAGACTTGCTAGAATATAATAGCGCCAATTGTGGATCTTTCAAAATATGATCTATTTTCGATTGAAGTTTTTCCTTTTCAGTAGTCTGAACTTTTCTTCCTGCTAGAAACTTTAACATTGTTTTTATTTGTGATTTTTATTTCTATGAAAAGGCCCCGGAACACTAGGTATACAATTTTTGAAAACACCCCTGATGATTTTCTTTTCAGGCAAGCTCCCCAATGCCGCCTCCTCAAATGATGCCGATTCAACAGCAACAACAGCAAGAAGTACTATCTCAGCAGCAAATGCAGCCACAAGCTCCCCGGCAAATACAACAGCCTCTTCCACCTCCTCCACAAGCTCAACAATCCCATTCGCAACAGCAACAACATCCAGGAGGTGTCGTTTGTGGAGCTATAATGGATAAGGTAAAACAGTATTATCAATCGAATTAAACGAAAAATAAAATAGTTTCAGTCAAGACTCGACGAC</canonical>
            <polymorphic>TTTCAGCCAATGCAACAGGGTCCACCGCCTCAGAACCACCAGAATCCGAATGAGCAACAGTTCGTTTCGCCACCACAAATGGGTGGAATGGGTGGACCGATGAGAATGCAGATGCAGCAACCGAGTGAGGCTTAAAAGATATATCTGAAAATAATGCGAATTCATGCTTTCAGTGCGCCAAATGCCCTACCCACCACCTCAAATGCGCGGCCAAGGACCTCCTCAGCACTTTTCTCCGATGGGAATGCCACCGCAACAACAACAGTTCACTCCAAGTGGGCAACCAATTCAGATGGGACAACGTCCAATGCAACAGCCAAATCAAGGGGGCCAAATGCCAATGGGAATGTCTGGGGTATAATGTTGTTGAAGAGGCTTCTGGTAATAATGTTCTAATTATTTCAGCCAGTGCCAATGGGGATGGTCAGTGGACCACCACAGCACGGAATTCAACCGCCGCAGCATTTTATGGTAAGTGTTTCTTTTTCTCATTCTGAAAKCTTCATTGTTTACTACAGTAGTAATTTAGACTTGCTAGAATATAATAGCGCCAATTGTGGATCTTTCAAAATATGATCTATTTTCGATTGAAGTTTTTCCTTTTCAGTAGTCTGAACTTTTCTTCCTGCTAGAAACTTTAACATTGTTTTTATTTGTGATTTTTATTTCTATGAAAAGGCCCCGGAACACTAGGTATACAATTTTTGAAAACACCCCTGATGATTTTCTTTTCAGGCAAGCTCCCCAATGCCGCCTCCTCAAATGATGCCGATTCAACAGCAACAACAGCAAGAAGTACTATCTCAGCAGCAAATGCAGCCACAAGCTCCCCGGCAAATACAACAGCCTCTTCCACCTCCTCCACAAGCTCAACAATCCCATTCGCAACAGCAACAACATCCAGGAGGTGTCGTTTGTGGAGCTATAATGGATAAGGTAAAACAGTATTATCAATCGAATTAAACGAAAAATAAAATAGTTTCAGTCAAGACTCGACGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGAAGAGGCTTCTGGTAATA</pcr_primer_p1>
		<pcr_primer_p2>TTCAGACTACTGAAAAGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTTGAAGAGGCTTCTGGTAATAATGTTCTAATTATTTCAGCCAGTGCCAATGGGGATGGTCAGTGGACCACCACAGCACGGAATTCAACCGCCGCAGCATTTTATGGTAAGTGTTTCTTTTTCTCATTCTGAAATCTTCATTGTTTACTACAGTAGTAATTTAGACTTGCTAGAATATAATAGCGCCAATTGTGGATCTTTCAAAATATGATCTATTTTCGATTGAAGTTTTTCCTTTTCAGTAGTCTGAA</canonical_amplicon>
		<polymorphic_amplicon>GTTGAAGAGGCTTCTGGTAATAATGTTCTAATTATTTCAGCCAGTGCCAATGGGGATGGTCAGTGGACCACCACAGCACGGAATTCAACCGCCGCAGCATTTTATGGTAAGTGTTTCTTTTTCTCATTCTGAAAKCTTCATTGTTTACTACAGTAGTAATTTAGACTTGCTAGAATATAATAGCGCCAATTGTGGATCTTTCAAAATATGATCTATTTTCGATTGAAGTTTTTCCTTTTCAGTAGTCTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14003</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>100208</contig_pos>
        <strand>+</strand>
        <context>TTTCAGCCAG[G/T]GCCAATGGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATGTTGTTGAAGAGGCTTCTGGTAATAATGTTCTAATTATTTCAGCCAG</left_flank>
        <right_flank>GCCAATGGGGATGGTCAGTGGACCACCACAGCACGGAATTCAACCGCCGC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCAATTCGTCACCCGTCTCACTGTACTCACTAAATATTACTAAACTATGTGGTCGTTCCCTCATGGCTACCCTATGTTCTATCCGCATTTTCAGCCAATGCAACAGGGTCCACCGCCTCAGAACCACCAGAATCCGAATGAGCAACAGTTCGTTTCGCCACCACAAATGGGTGGAATGGGTGGACCGATGAGAATGCAGATGCAGCAACCGAGTGAGGCTTAAAAGATATATCTGAAAATAATGCGAATTCATGCTTTCAGTGCGCCAAATGCCCTACCCACCACCTCAAATGCGCGGCCAAGGACCTCCTCAGCACTTTTCTCCGATGGGAATGCCACCGCAACAACAACAGTTCACTCCAAGTGGGCAACCAATTCAGATGGGACAACGTCCAATGCAACAGCCAAATCAAGGGGGCCAAATGCCAATGGGAATGTCTGGGGTATAATGTTGTTGAAGAGGCTTCTGGTAATAATGTTCTAATTATTTCAGCCAGTGCCAATGGGGATGGTCAGTGGACCACCACAGCACGGAATTCAACCGCCGCAGCATTTTATGGTAAGTGTTTCTTTTTCTCATTCTGAAATCTTCATTGTTTACTACAGTAGTAATTTAGACTTGCTAGAATATAATAGCGCCAATTGTGGATCTTTCAAAATATGATCTATTTTCGATTGAAGTTTTTCCTTTTCAGTAGTCTGAACTTTTCTTCCTGCTAGAAACTTTAACATTGTTTTTATTTGTGATTTTTATTTCTATGAAAAGGCCCCGGAACACTAGGTATACAATTTTTGAAAACACCCCTGATGATTTTCTTTTCAGGCAAGCTCCCCAATGCCGCCTCCTCAAATGATGCCGATTCAACAGCAACAACAGCAAGAAGTACTATCTCAGCAGCAAATGCAGCCACAAGCTCCCCGGCAAATACAACAGCCTCTTCCACCTCCTCCACAAGCTCAACAATCCCATTCGCAACAGCAACAACATCCAGGAGGTG</canonical>
            <polymorphic>CTTCAATTCGTCACCCGTCTCACTGTACTCACTAAATATTACTAAACTATGTGGTCGTTCCCTCATGGCTACCCTATGTTCTATCCGCATTTTCAGCCAATGCAACAGGGTCCACCGCCTCAGAACCACCAGAATCCGAATGAGCAACAGTTCGTTTCGCCACCACAAATGGGTGGAATGGGTGGACCGATGAGAATGCAGATGCAGCAACCGAGTGAGGCTTAAAAGATATATCTGAAAATAATGCGAATTCATGCTTTCAGTGCGCCAAATGCCCTACCCACCACCTCAAATGCGCGGCCAAGGACCTCCTCAGCACTTTTCTCCGATGGGAATGCCACCGCAACAACAACAGTTCACTCCAAGTGGGCAACCAATTCAGATGGGACAACGTCCAATGCAACAGCCAAATCAAGGGGGCCAAATGCCAATGGGAATGTCTGGGGTATAATGTTGTTGAAGAGGCTTCTGGTAATAATGTTCTAATTATTTCAGCCAGKGCCAATGGGGATGGTCAGTGGACCACCACAGCACGGAATTCAACCGCCGCAGCATTTTATGGTAAGTGTTTCTTTTTCTCATTCTGAAATCTTCATTGTTTACTACAGTAGTAATTTAGACTTGCTAGAATATAATAGCGCCAATTGTGGATCTTTCAAAATATGATCTATTTTCGATTGAAGTTTTTCCTTTTCAGTAGTCTGAACTTTTCTTCCTGCTAGAAACTTTAACATTGTTTTTATTTGTGATTTTTATTTCTATGAAAAGGCCCCGGAACACTAGGTATACAATTTTTGAAAACACCCCTGATGATTTTCTTTTCAGGCAAGCTCCCCAATGCCGCCTCCTCAAATGATGCCGATTCAACAGCAACAACAGCAAGAAGTACTATCTCAGCAGCAAATGCAGCCACAAGCTCCCCGGCAAATACAACAGCCTCTTCCACCTCCTCCACAAGCTCAACAATCCCATTCGCAACAGCAACAACATCCAGGAGGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>133 109 99 81 61 48 46 35 34 33 33 32 31 24 22 22 19 19 18 14 13 10 9 9 9 9 9 5 5 3 3 3 0</canonical_bands>
                <polymorphic_bands>152 109 99 81 61 48 46 35 34 33 33 32 31 24 22 22 19 18 14 13 10 9 9 9 9 9 5 5 3 3 3 0</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAACAACAGTTCACTCCAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTCAGAATGAGAAAAAGAAACAC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ACAACAACAGTTCACTCCAAGTGGGCAACCAATTCAGATGGGACAACGTCCAATGCAACAGCCAAATCAAGGGGGCCAAATGCCAATGGGAATGTCTGGGGTATAATGTTGTTGAAGAGGCTTCTGGTAATAATGTTCTAATTATTTCAGCCAGTGCCAATGGGGATGGTCAGTGGACCACCACAGCACGGAATTCAACCGCCGCAGCATTTTATGGTAAGTGTTTCTTTTTCTCATTCTGAA</canonical_amplicon>
		<polymorphic_amplicon>ACAACAACAGTTCACTCCAAGTGGGCAACCAATTCAGATGGGACAACGTCCAATGCAACAGCCAAATCAAGGGGGCCAAATGCCAATGGGAATGTCTGGGGTATAATGTTGTTGAAGAGGCTTCTGGTAATAATGTTCTAATTATTTCAGCCAGKGCCAATGGGGATGGTCAGTGGACCACCACAGCACGGAATTCAACCGCCGCAGCATTTTATGGTAAGTGTTTCTTTTTCTCATTCTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14004</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>100188</contig_pos>
        <strand>+</strand>
        <context>TGGTAATAAT[A/G]TTCTAATTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGGGAATGTCTGGGGTATAATGTTGTTGAAGAGGCTTCTGGTAATAAT</left_flank>
        <right_flank>TTCTAATTATTTCAGCCAGTGCCAATGGGGATGGTCAGTGGACCACCACA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCCTTCCCATCACAAAAGCTTCAATTCGTCACCCGTCTCACTGTACTCACTAAATATTACTAAACTATGTGGTCGTTCCCTCATGGCTACCCTATGTTCTATCCGCATTTTCAGCCAATGCAACAGGGTCCACCGCCTCAGAACCACCAGAATCCGAATGAGCAACAGTTCGTTTCGCCACCACAAATGGGTGGAATGGGTGGACCGATGAGAATGCAGATGCAGCAACCGAGTGAGGCTTAAAAGATATATCTGAAAATAATGCGAATTCATGCTTTCAGTGCGCCAAATGCCCTACCCACCACCTCAAATGCGCGGCCAAGGACCTCCTCAGCACTTTTCTCCGATGGGAATGCCACCGCAACAACAACAGTTCACTCCAAGTGGGCAACCAATTCAGATGGGACAACGTCCAATGCAACAGCCAAATCAAGGGGGCCAAATGCCAATGGGAATGTCTGGGGTATAATGTTGTTGAAGAGGCTTCTGGTAATAATGTTCTAATTATTTCAGCCAGTGCCAATGGGGATGGTCAGTGGACCACCACAGCACGGAATTCAACCGCCGCAGCATTTTATGGTAAGTGTTTCTTTTTCTCATTCTGAAATCTTCATTGTTTACTACAGTAGTAATTTAGACTTGCTAGAATATAATAGCGCCAATTGTGGATCTTTCAAAATATGATCTATTTTCGATTGAAGTTTTTCCTTTTCAGTAGTCTGAACTTTTCTTCCTGCTAGAAACTTTAACATTGTTTTTATTTGTGATTTTTATTTCTATGAAAAGGCCCCGGAACACTAGGTATACAATTTTTGAAAACACCCCTGATGATTTTCTTTTCAGGCAAGCTCCCCAATGCCGCCTCCTCAAATGATGCCGATTCAACAGCAACAACAGCAAGAAGTACTATCTCAGCAGCAAATGCAGCCACAAGCTCCCCGGCAAATACAACAGCCTCTTCCACCTCCTCCACAAGCTCAACAATCCCATTCGCAACA</canonical>
            <polymorphic>CTCCCTTCCCATCACAAAAGCTTCAATTCGTCACCCGTCTCACTGTACTCACTAAATATTACTAAACTATGTGGTCGTTCCCTCATGGCTACCCTATGTTCTATCCGCATTTTCAGCCAATGCAACAGGGTCCACCGCCTCAGAACCACCAGAATCCGAATGAGCAACAGTTCGTTTCGCCACCACAAATGGGTGGAATGGGTGGACCGATGAGAATGCAGATGCAGCAACCGAGTGAGGCTTAAAAGATATATCTGAAAATAATGCGAATTCATGCTTTCAGTGCGCCAAATGCCCTACCCACCACCTCAAATGCGCGGCCAAGGACCTCCTCAGCACTTTTCTCCGATGGGAATGCCACCGCAACAACAACAGTTCACTCCAAGTGGGCAACCAATTCAGATGGGACAACGTCCAATGCAACAGCCAAATCAAGGGGGCCAAATGCCAATGGGAATGTCTGGGGTATAATGTTGTTGAAGAGGCTTCTGGTAATAATRTTCTAATTATTTCAGCCAGTGCCAATGGGGATGGTCAGTGGACCACCACAGCACGGAATTCAACCGCCGCAGCATTTTATGGTAAGTGTTTCTTTTTCTCATTCTGAAATCTTCATTGTTTACTACAGTAGTAATTTAGACTTGCTAGAATATAATAGCGCCAATTGTGGATCTTTCAAAATATGATCTATTTTCGATTGAAGTTTTTCCTTTTCAGTAGTCTGAACTTTTCTTCCTGCTAGAAACTTTAACATTGTTTTTATTTGTGATTTTTATTTCTATGAAAAGGCCCCGGAACACTAGGTATACAATTTTTGAAAACACCCCTGATGATTTTCTTTTCAGGCAAGCTCCCCAATGCCGCCTCCTCAAATGATGCCGATTCAACAGCAACAACAGCAAGAAGTACTATCTCAGCAGCAAATGCAGCCACAAGCTCCCCGGCAAATACAACAGCCTCTTCCACCTCCTCCACAAGCTCAACAATCCCATTCGCAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAACAACAGTTCACTCCAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTCAGAATGAGAAAAAGAAACAC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ACAACAACAGTTCACTCCAAGTGGGCAACCAATTCAGATGGGACAACGTCCAATGCAACAGCCAAATCAAGGGGGCCAAATGCCAATGGGAATGTCTGGGGTATAATGTTGTTGAAGAGGCTTCTGGTAATAATGTTCTAATTATTTCAGCCAGTGCCAATGGGGATGGTCAGTGGACCACCACAGCACGGAATTCAACCGCCGCAGCATTTTATGGTAAGTGTTTCTTTTTCTCATTCTGAA</canonical_amplicon>
		<polymorphic_amplicon>ACAACAACAGTTCACTCCAAGTGGGCAACCAATTCAGATGGGACAACGTCCAATGCAACAGCCAAATCAAGGGGGCCAAATGCCAATGGGAATGTCTGGGGTATAATGTTGTTGAAGAGGCTTCTGGTAATAATRTTCTAATTATTTCAGCCAGTGCCAATGGGGATGGTCAGTGGACCACCACAGCACGGAATTCAACCGCCGCAGCATTTTATGGTAAGTGTTTCTTTTTCTCATTCTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14005</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>120218</contig_pos>
        <strand>+</strand>
        <context>agaagGCGTT[A/G]GGAAAAAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTGATTAGAAAAGAAAAGAAGAAGTGAGAAGAAGAAGAAGAAGGCGTT</left_flank>
        <right_flank>GGAAAAAAGAGGCGTGGCTCATTTTGATTTTAGGGAATTGATTGGAAATC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTTTCACCGTAAACACTTCAACAGAACGCCCCCAAATCGTCAATTTTGAACCCATGAAAAAGGTATCAAAAAGTGGTCAACTAAAAAATGTTTATCATAATAACACAAAGATTTTGTTGGTTGATTATTTTTTCCTATCTTCCAGAGGAACCGAGATGAATTGGCTCAAATTTGAAAGTTAGGGGCGTTCTATAAAGTGAAATTCGATAGAGGGGACCAGTAAAGAATCCAAAAATCTACAATCTCAAAAATTCCAATTCATTGTTTTCCATTTTACTTTTCATTAATATCTTCTGTACATTATTTTCTTCTTCTCTAACTTCTGATTTTCTGTCACTCCCCCCAACGGACCTATAAATCAAAAGAGATTGGCTTCCTCCGATGGCAATAGGCCTCCCTATTACGGGTTGTGTAATATTACGGTGAACTGGATTCCTGTTTTTATACAAGTGATTAGAAAAGAAAAGAAGAAGTGAGAAGAAGAAGAAGAAGGCGTTAGGAAAAAAGAGGCGTGGCTCATTTTGATTTTAGGGAATTGATTGGAAATCAAACTTACGAATGTGTAGACGGCAATGACCGATGTGGCAACGGAGAGACCGCAACAGAAACATCGACGAATTTGAACTTCCACTTTTGCCATGCTAGAAAAAATTGGAAGTTTTGAAATTGTTTTTTTAGAATACAATTATAAACTAAGAAAAAAGAGTACAAAATGTTTGGGATATTTACCGTAAAACATATAATAGAAGTGCCCTCACATTGTCTAGTCTTCAGATATCTCGATTTCTGTGCAAGATATCAAGAATGTGTTAACTGATAAAACACTTCTGATGTTGTGATAAGCAATTTATCAGTTGTCTACTGTTTGCTTTCTTTTACAGAAAATGAGATAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTAGGGGAAATACGGTAAATTAACCGAAAAGTAGGTATCAAATTAGATAAAAAGAACAATTTTTCTGATT</canonical>
            <polymorphic>CTCTTTCACCGTAAACACTTCAACAGAACGCCCCCAAATCGTCAATTTTGAACCCATGAAAAAGGTATCAAAAAGTGGTCAACTAAAAAATGTTTATCATAATAACACAAAGATTTTGTTGGTTGATTATTTTTTCCTATCTTCCAGAGGAACCGAGATGAATTGGCTCAAATTTGAAAGTTAGGGGCGTTCTATAAAGTGAAATTCGATAGAGGGGACCAGTAAAGAATCCAAAAATCTACAATCTCAAAAATTCCAATTCATTGTTTTCCATTTTACTTTTCATTAATATCTTCTGTACATTATTTTCTTCTTCTCTAACTTCTGATTTTCTGTCACTCCCCCCAACGGACCTATAAATCAAAAGAGATTGGCTTCCTCCGATGGCAATAGGCCTCCCTATTACGGGTTGTGTAATATTACGGTGAACTGGATTCCTGTTTTTATACAAGTGATTAGAAAAGAAAAGAAGAAGTGAGAAGAAGAAGAAGAAGGCGTTRGGAAAAAAGAGGCGTGGCTCATTTTGATTTTAGGGAATTGATTGGAAATCAAACTTACGAATGTGTAGACGGCAATGACCGATGTGGCAACGGAGAGACCGCAACAGAAACATCGACGAATTTGAACTTCCACTTTTGCCATGCTAGAAAAAATTGGAAGTTTTGAAATTGTTTTTTTAGAATACAATTATAAACTAAGAAAAAAGAGTACAAAATGTTTGGGATATTTACCGTAAAACATATAATAGAAGTGCCCTCACATTGTCTAGTCTTCAGATATCTCGATTTCTGTGCAAGATATCAAGAATGTGTTAACTGATAAAACACTTCTGATGTTGTGATAAGCAATTTATCAGTTGTCTACTGTTTGCTTTCTTTTACAGAAAATGAGATAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTAGGGGAAATACGGTAAATTAACCGAAAAGTAGGTATCAAATTAGATAAAAAGAACAATTTTTCTGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTCTGATTTTCTGTCACTCC</pcr_primer_p1>
		<pcr_primer_p2>TCTACACATTCGTAAGTTTGATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTTCTGATTTTCTGTCACTCCCCCCAACGGACCTATAAATCAAAAGAGATTGGCTTCCTCCGATGGCAATAGGCCTCCCTATTACGGGTTGTGTAATATTACGGTGAACTGGATTCCTGTTTTTATACAAGTGATTAGAAAAGAAAAGAAGAAGTGAGAAGAAGAAGAAGAAGGCGTTAGGAAAAAAGAGGCGTGGCTCATTTTGATTTTAGGGAATTGATTGGAAATCAAACTTACGAATGTGTAGA</canonical_amplicon>
		<polymorphic_amplicon>ACTTCTGATTTTCTGTCACTCCCCCCAACGGACCTATAAATCAAAAGAGATTGGCTTCCTCCGATGGCAATAGGCCTCCCTATTACGGGTTGTGTAATATTACGGTGAACTGGATTCCTGTTTTTATACAAGTGATTAGAAAAGAAAAGAAGAAGTGAGAAGAAGAAGAAGAAGGCGTTRGGAAAAAAGAGGCGTGGCTCATTTTGATTTTAGGGAATTGATTGGAAATCAAACTTACGAATGTGTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14040</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>144817</contig_pos>
        <strand>+</strand>
        <context>GTTTTCAAAA[A/G]TCTGAAAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTATTGGATTAATATGAAATGAAACAATCAGTCTTCTAGTTTTCAAAA</left_flank>
        <right_flank>TCTGAAAAAGACAAACTAACCTGCAAGTCCGAAGAACAGTACAGTAAGGT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGACGTCACACGGTTTCACCGTAGTACTCGAAACTATTCCGGAGCCGATCTCAAAAATGAGAAATGAGTCTTTCTTTCTTTTTTTCTTTAGTCTGCAGAAGAGCCACTTAACGAAAATGAAGATGAGAAAGTCAATCAACTAGGGAGGTCTTTTCTTTCTTTTTTAACTTTTTACTTGGAAAAAAAGTCCATCAATTTTCTTCGAAAAAAAAGAAAAAAAGTAGAAAAGAGGATTCTCCAGGATTCTAAATTTCGGATGGCGTTGCCGTTGTTACAGAAAAGATCCATCAAACAATGTGCGGATGTTTATTTTTTGAGCTCGCTTTCGCTTTTTTTTTCAGAGAGTCACTGGGGAATCCCGATGCTATCTTGGCGCCATGATTTATATACACTAGTTTTTTTCTTTGTTACTTTAAATGCTCCGACATAGTAACGCATGATAAGATTTCTTATTGGATTAATATGAAATGAAACAATCAGTCTTCTAGTTTTCAAAAGTCTGAAAAAGACAAACTAACCTGCAAGTCCGAAGAACAGTACAGTAAGGTTTGAGTGGCGCATGGCTTCCGACGTTCAGTCTTCTTTTCTGAAACAAAAAAGAAGAAGTGGTCGATGTGAATATTAGAATGAGTAGAAACGGGAGCAACAAGAGTGTCGAGATGGAAATGGGCGGAGCTTCAAGAGCATATACGGGAGGGGCGGGGCTTACGGGAGGATTGAGGGGAAAAGAGAAAGAGTGGGAAAGGGAGGAAAAGACGAAGGAAAAAGAAAGAATAATGAAAAAGGACTTTAAAAGAATTGGGCTTATGAAATCATGATTTTTAAATGAGTTTTAGAATTCCAGAATCTCAGAATTTCAGTAATTTTACAGTTTCTCAAATTTAAAACTTCAGACATCTAAAATTTCAGAATTCCAGAATTTCGGAATTTCAGAAATACAGAAATCACTAGTTATAGATCTTTAGACCTTCGAAATTTCGAAGTTCCAAGAATCCAGA</canonical>
            <polymorphic>GATGACGTCACACGGTTTCACCGTAGTACTCGAAACTATTCCGGAGCCGATCTCAAAAATGAGAAATGAGTCTTTCTTTCTTTTTTTCTTTAGTCTGCAGAAGAGCCACTTAACGAAAATGAAGATGAGAAAGTCAATCAACTAGGGAGGTCTTTTCTTTCTTTTTTAACTTTTTACTTGGAAAAAAAGTCCATCAATTTTCTTCGAAAAAAAAGAAAAAAAGTAGAAAAGAGGATTCTCCAGGATTCTAAATTTCGGATGGCGTTGCCGTTGTTACAGAAAAGATCCATCAAACAATGTGCGGATGTTTATTTTTTGAGCTCGCTTTCGCTTTTTTTTTCAGAGAGTCACTGGGGAATCCCGATGCTATCTTGGCGCCATGATTTATATACACTAGTTTTTTTCTTTGTTACTTTAAATGCTCCGACATAGTAACGCATGATAAGATTTCTTATTGGATTAATATGAAATGAAACAATCAGTCTTCTAGTTTTCAAAARTCTGAAAAAGACAAACTAACCTGCAAGTCCGAAGAACAGTACAGTAAGGTTTGAGTGGCGCATGGCTTCCGACGTTCAGTCTTCTTTTCTGAAACAAAAAAGAAGAAGTGGTCGATGTGAATATTAGAATGAGTAGAAACGGGAGCAACAAGAGTGTCGAGATGGAAATGGGCGGAGCTTCAAGAGCATATACGGGAGGGGCGGGGCTTACGGGAGGATTGAGGGGAAAAGAGAAAGAGTGGGAAAGGGAGGAAAAGACGAAGGAAAAAGAAAGAATAATGAAAAAGGACTTTAAAAGAATTGGGCTTATGAAATCATGATTTTTAAATGAGTTTTAGAATTCCAGAATCTCAGAATTTCAGTAATTTTACAGTTTCTCAAATTTAAAACTTCAGACATCTAAAATTTCAGAATTCCAGAATTTCGGAATTTCAGAAATACAGAAATCACTAGTTATAGATCTTTAGACCTTCGAAATTTCGAAGTTCCAAGAATCCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTACTTTAAATGCTCCGACATA</pcr_primer_p1>
		<pcr_primer_p2>TCCCGTTTCTACTCATTCTAATA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>GTTACTTTAAATGCTCCGACATAGTAACGCATGATAAGATTTCTTATTGGATTAATATGAAATGAAACAATCAGTCTTCTAGTTTTCAAAAGTCTGAAAAAGACAAACTAACCTGCAAGTCCGAAGAACAGTACAGTAAGGTTTGAGTGGCGCATGGCTTCCGACGTTCAGTCTTCTTTTCTGAAACAAAAAAGAAGAAGTGGTCGATGTGAATATTAGAATGAGTAGAAACGGGA</canonical_amplicon>
		<polymorphic_amplicon>GTTACTTTAAATGCTCCGACATAGTAACGCATGATAAGATTTCTTATTGGATTAATATGAAATGAAACAATCAGTCTTCTAGTTTTCAAAARTCTGAAAAAGACAAACTAACCTGCAAGTCCGAAGAACAGTACAGTAAGGTTTGAGTGGCGCATGGCTTCCGACGTTCAGTCTTCTTTTCTGAAACAAAAAAGAAGAAGTGGTCGATGTGAATATTAGAATGAGTAGAAACGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14041</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>148378</contig_pos>
        <strand>+</strand>
        <context>AAAATCCAAA[A/C]TGGAAGTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTAAACGTCACTAGGCAATAGAGCTAAAAGAGTTGAAAACAAAATCCAAA</left_flank>
        <right_flank>TGGAAGTGAATGTCAAAAACAGTCGTGGGTGGGATGGGTGTTTGCAAATC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACAGCTACATAGTACATGGCAAACACAGATTTTTTTTTTGGAAAATCTTGAAGTATTGTGAAGAACATTTCGAAAATATTTTTCAAAAAGGTTGGATGCTGAGCCTGAAATTAGAGCCGGAGTTCTTATTTGTCTAGTTCTCATATGTAGCAATTCTCATTTTCCGAGTTCTCATCCCTGGTACCACCATTTCAATAAGTTTTTTGATTGATTAAATGACTGCAAAAAACATATCACTCAAACTTTTTGCTTTCGCAAAAGGAATCAACTCGGAAAGTTCTAGAAGTTCAGGATTATAAGAAAAAAAGAGAGAGATCTAGAAGTTCAGGATTATGATGGTGATTGGTGCACGGTACTTTGATCCTGGAAAAATCAGAAGGATCAGATGGGATTTTTTAGGAAATTAAAGATCTGTTGTTAAGAAATAATGAAGATTAGATTTTCAGAGTAAACGTCACTAGGCAATAGAGCTAAAAGAGTTGAAAACAAAATCCAAAATGGAAGTGAATGTCAAAAACAGTCGTGGGTGGGATGGGTGTTTGCAAATCACAATCATGTGAGAAAATTCAGAACCAGAGAAATTACATTGATTCTAGTTTTTAGGGGATTCTCAGGGTCCTGAAACGATAGAAACTTCTTAGTCGCTTGAAGTATAAAAGGTCTAGAGTACACTTCTCAGAAATGAAAATTTCAGAATACCTACCGTATTTCCTCTAACATGTAGAACCCCACCCACACTGTCAAGTTTGATATAATTTTTCTTGGCTCTCATGCAGGATAACGCAAATGAGTCAACTAATGAAATGATTCTGATGATATGATAAGCAATTAATCCGTTGACAACTTTTTTACATATATCTTTCACAGGAGCCCAGATAACTTGGCTCAAAGGTAAAACTTAGGGAGCCATTCTATTACAGGTTTTACGGTACATGCTCGTATAAGAAAATGTATCTCTTTCTGGCACATGATCACAAGAGCTACAGTAGACTATCTTG</canonical>
            <polymorphic>AGACAGCTACATAGTACATGGCAAACACAGATTTTTTTTTTGGAAAATCTTGAAGTATTGTGAAGAACATTTCGAAAATATTTTTCAAAAAGGTTGGATGCTGAGCCTGAAATTAGAGCCGGAGTTCTTATTTGTCTAGTTCTCATATGTAGCAATTCTCATTTTCCGAGTTCTCATCCCTGGTACCACCATTTCAATAAGTTTTTTGATTGATTAAATGACTGCAAAAAACATATCACTCAAACTTTTTGCTTTCGCAAAAGGAATCAACTCGGAAAGTTCTAGAAGTTCAGGATTATAAGAAAAAAAGAGAGAGATCTAGAAGTTCAGGATTATGATGGTGATTGGTGCACGGTACTTTGATCCTGGAAAAATCAGAAGGATCAGATGGGATTTTTTAGGAAATTAAAGATCTGTTGTTAAGAAATAATGAAGATTAGATTTTCAGAGTAAACGTCACTAGGCAATAGAGCTAAAAGAGTTGAAAACAAAATCCAAAMTGGAAGTGAATGTCAAAAACAGTCGTGGGTGGGATGGGTGTTTGCAAATCACAATCATGTGAGAAAATTCAGAACCAGAGAAATTACATTGATTCTAGTTTTTAGGGGATTCTCAGGGTCCTGAAACGATAGAAACTTCTTAGTCGCTTGAAGTATAAAAGGTCTAGAGTACACTTCTCAGAAATGAAAATTTCAGAATACCTACCGTATTTCCTCTAACATGTAGAACCCCACCCACACTGTCAAGTTTGATATAATTTTTCTTGGCTCTCATGCAGGATAACGCAAATGAGTCAACTAATGAAATGATTCTGATGATATGATAAGCAATTAATCCGTTGACAACTTTTTTACATATATCTTTCACAGGAGCCCAGATAACTTGGCTCAAAGGTAAAACTTAGGGAGCCATTCTATTACAGGTTTTACGGTACATGCTCGTATAAGAAAATGTATCTCTTTCTGGCACATGATCACAAGAGCTACAGTAGACTATCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAAGTTCAGGATTATGATGGT</pcr_primer_p1>
		<pcr_primer_p2>AATTTTCTCACATGATTGTGATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGAAGTTCAGGATTATGATGGTGATTGGTGCACGGTACTTTGATCCTGGAAAAATCAGAAGGATCAGATGGGATTTTTTAGGAAATTAAAGATCTGTTGTTAAGAAATAATGAAGATTAGATTTTCAGAGTAAACGTCACTAGGCAATAGAGCTAAAAGAGTTGAAAACAAAATCCAAAATGGAAGTGAATGTCAAAAACAGTCGTGGGTGGGATGGGTGTTTGCAAATCACAATCATGTGAGAAAATT</canonical_amplicon>
		<polymorphic_amplicon>TAGAAGTTCAGGATTATGATGGTGATTGGTGCACGGTACTTTGATCCTGGAAAAATCAGAAGGATCAGATGGGATTTTTTAGGAAATTAAAGATCTGTTGTTAAGAAATAATGAAGATTAGATTTTCAGAGTAAACGTCACTAGGCAATAGAGCTAAAAGAGTTGAAAACAAAATCCAAAMTGGAAGTGAATGTCAAAAACAGTCGTGGGTGGGATGGGTGTTTGCAAATCACAATCATGTGAGAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14042</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>148244</contig_pos>
        <strand>+</strand>
        <context>TACTTTGATC[C/G]TGGAAAAATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GATCTAGAAGTTCAGGATTATGATGGTGATTGGTGCACGGTACTTTGATC</left_flank>
        <right_flank>TGGAAAAATCAGAAGGATCAGATGGGATTTTTTAGGAAATTAAAGATCTG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCATTCATTTCGTCAACAAGACGTCTTCCGGACTTGTGGGTGTCAAGTCTGTCTGACATAGAAAAAGACGTAGATGACGTTAGCAGTATACACATTTCAATGGTGGTTCCAGGGATAAGAACTCGGAAAATGAGACAGCTACATAGTACATGGCAAACACAGATTTTTTTTTTGGAAAATCTTGAAGTATTGTGAAGAACATTTCGAAAATATTTTTCAAAAAGGTTGGATGCTGAGCCTGAAATTAGAGCCGGAGTTCTTATTTGTCTAGTTCTCATATGTAGCAATTCTCATTTTCCGAGTTCTCATCCCTGGTACCACCATTTCAATAAGTTTTTTGATTGATTAAATGACTGCAAAAAACATATCACTCAAACTTTTTGCTTTCGCAAAAGGAATCAACTCGGAAAGTTCTAGAAGTTCAGGATTATAAGAAAAAAAGAGAGAGATCTAGAAGTTCAGGATTATGATGGTGATTGGTGCACGGTACTTTGATCCTGGAAAAATCAGAAGGATCAGATGGGATTTTTTAGGAAATTAAAGATCTGTTGTTAAGAAATAATGAAGATTAGATTTTCAGAGTAAACGTCACTAGGCAATAGAGCTAAAAGAGTTGAAAACAAAATCCAAAATGGAAGTGAATGTCAAAAACAGTCGTGGGTGGGATGGGTGTTTGCAAATCACAATCATGTGAGAAAATTCAGAACCAGAGAAATTACATTGATTCTAGTTTTTAGGGGATTCTCAGGGTCCTGAAACGATAGAAACTTCTTAGTCGCTTGAAGTATAAAAGGTCTAGAGTACACTTCTCAGAAATGAAAATTTCAGAATACCTACCGTATTTCCTCTAACATGTAGAACCCCACCCACACTGTCAAGTTTGATATAATTTTTCTTGGCTCTCATGCAGGATAACGCAAATGAGTCAACTAATGAAATGATTCTGATGATATGATAAGCAATTAATCCGTTGACAACTTTTTTACATATATCTTTCA</canonical>
            <polymorphic>CTTCATTCATTTCGTCAACAAGACGTCTTCCGGACTTGTGGGTGTCAAGTCTGTCTGACATAGAAAAAGACGTAGATGACGTTAGCAGTATACACATTTCAATGGTGGTTCCAGGGATAAGAACTCGGAAAATGAGACAGCTACATAGTACATGGCAAACACAGATTTTTTTTTTGGAAAATCTTGAAGTATTGTGAAGAACATTTCGAAAATATTTTTCAAAAAGGTTGGATGCTGAGCCTGAAATTAGAGCCGGAGTTCTTATTTGTCTAGTTCTCATATGTAGCAATTCTCATTTTCCGAGTTCTCATCCCTGGTACCACCATTTCAATAAGTTTTTTGATTGATTAAATGACTGCAAAAAACATATCACTCAAACTTTTTGCTTTCGCAAAAGGAATCAACTCGGAAAGTTCTAGAAGTTCAGGATTATAAGAAAAAAAGAGAGAGATCTAGAAGTTCAGGATTATGATGGTGATTGGTGCACGGTACTTTGATCSTGGAAAAATCAGAAGGATCAGATGGGATTTTTTAGGAAATTAAAGATCTGTTGTTAAGAAATAATGAAGATTAGATTTTCAGAGTAAACGTCACTAGGCAATAGAGCTAAAAGAGTTGAAAACAAAATCCAAAATGGAAGTGAATGTCAAAAACAGTCGTGGGTGGGATGGGTGTTTGCAAATCACAATCATGTGAGAAAATTCAGAACCAGAGAAATTACATTGATTCTAGTTTTTAGGGGATTCTCAGGGTCCTGAAACGATAGAAACTTCTTAGTCGCTTGAAGTATAAAAGGTCTAGAGTACACTTCTCAGAAATGAAAATTTCAGAATACCTACCGTATTTCCTCTAACATGTAGAACCCCACCCACACTGTCAAGTTTGATATAATTTTTCTTGGCTCTCATGCAGGATAACGCAAATGAGTCAACTAATGAAATGATTCTGATGATATGATAAGCAATTAATCCGTTGACAACTTTTTTACATATATCTTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>500 202 186 112</canonical_bands>
                <polymorphic_bands>686 202 112</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>500 202 186 112</canonical_bands>
                <polymorphic_bands>686 202 112</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCACTCAAACTTTTTGCTTTC</pcr_primer_p1>
		<pcr_primer_p2>TCTTTTAGCTCTATTGCCTAGTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TATCACTCAAACTTTTTGCTTTCGCAAAAGGAATCAACTCGGAAAGTTCTAGAAGTTCAGGATTATAAGAAAAAAAGAGAGAGATCTAGAAGTTCAGGATTATGATGGTGATTGGTGCACGGTACTTTGATCCTGGAAAAATCAGAAGGATCAGATGGGATTTTTTAGGAAATTAAAGATCTGTTGTTAAGAAATAATGAAGATTAGATTTTCAGAGTAAACGTCACTAGGCAATAGAGCTAAAAGA</canonical_amplicon>
		<polymorphic_amplicon>TATCACTCAAACTTTTTGCTTTCGCAAAAGGAATCAACTCGGAAAGTTCTAGAAGTTCAGGATTATAAGAAAAAAAGAGAGAGATCTAGAAGTTCAGGATTATGATGGTGATTGGTGCACGGTACTTTGATCSTGGAAAAATCAGAAGGATCAGATGGGATTTTTTAGGAAATTAAAGATCTGTTGTTAAGAAATAATGAAGATTAGATTTTCAGAGTAAACGTCACTAGGCAATAGAGCTAAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14043</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>166127</contig_pos>
        <strand>+</strand>
        <context>CACGTCCGTT[G/T]TATTGGCCCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTCCTCTTCTTCTACCTTTTCACCACTTAACTAAAATAACACGTCCGTT</left_flank>
        <right_flank>TATTGGCCCCCATTTTATTTTTCTTTTCGGATCCTCGCCTGGTGGGTCCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTAGCGAACAAGATAATTGAGCTCAAAGTGGGGTGGGTTTCTATTAGAGAACATACTGTACTTGGCTAGAAATTTGAGCTAAATTATTTCGGTTCCTTCAAAAGATACCGAAAAAGTTTTAACCGATAAATTATTATCACTATATCTCCAACATCTCATGAAAACTGTATGAAAGACTTTTTCCAATAAAACTTTCAAAGAAAAATTTCAAAAATTTGAGACAAGGAAACAGTCTCTCAAAGTGCGAACTTCTTATTTTCTAGCTAACCACTCTCAAAAAAACAAACGCACTTTACTCATATATCTCATCACCGTCATCGGTGTCTGAAGGCGGAAAAAAGGAAAAAACGGATTTTCTCTGGAAAAAGTGAGAAGGACAGCTGACAAGACTGATTCATTTCTCTTCCCCCTCTCCCTGGTTTTTTTCAGTTTCCTTCTCTTCTTTTGATTCCTCTTCTTCTACCTTTTCACCACTTAACTAAAATAACACGTCCGTTGTATTGGCCCCCATTTTATTTTTCTTTTCGGATCCTCGCCTGGTGGGTCCCTTCGGCCCAACTGACACTCCAATTCGTATATGAATGGAGTTTAAGATCGCTGTCTCCTGATAACAATTTATCACTTTTATGCGATTGCTCATTGATGATATAATATGGGTTAGAAGTTCGTTAGCGGAGAACATTTCGAGAAGTGGCTCAAGTTTCGTTGGTTTTTTTTGCGTGTGAACGGATTTCTCTTTGAAATGATACCTTTTTTCAAAAAGTGTCTGAAGGAGAGAAAAATATGACATCTGCTAGGTTTCCCACTTTCATCTCATATTTTTTTGAAACTTTTCGCTCAAAAATAATTGGATTCTAGGTTCCTCTTCGAATCTAAATTTTTTGAATTCCAGGATTTTGGAAATAACTGTTTTCTGGTTCATTGTATCTTCAATATTTTCATAGTTTCTTCCCAATTTTTCTAGCGAAACTTTTAAAACCCCATTTTTCTTGAGTGTA</canonical>
            <polymorphic>TCCTAGCGAACAAGATAATTGAGCTCAAAGTGGGGTGGGTTTCTATTAGAGAACATACTGTACTTGGCTAGAAATTTGAGCTAAATTATTTCGGTTCCTTCAAAAGATACCGAAAAAGTTTTAACCGATAAATTATTATCACTATATCTCCAACATCTCATGAAAACTGTATGAAAGACTTTTTCCAATAAAACTTTCAAAGAAAAATTTCAAAAATTTGAGACAAGGAAACAGTCTCTCAAAGTGCGAACTTCTTATTTTCTAGCTAACCACTCTCAAAAAAACAAACGCACTTTACTCATATATCTCATCACCGTCATCGGTGTCTGAAGGCGGAAAAAAGGAAAAAACGGATTTTCTCTGGAAAAAGTGAGAAGGACAGCTGACAAGACTGATTCATTTCTCTTCCCCCTCTCCCTGGTTTTTTTCAGTTTCCTTCTCTTCTTTTGATTCCTCTTCTTCTACCTTTTCACCACTTAACTAAAATAACACGTCCGTTKTATTGGCCCCCATTTTATTTTTCTTTTCGGATCCTCGCCTGGTGGGTCCCTTCGGCCCAACTGACACTCCAATTCGTATATGAATGGAGTTTAAGATCGCTGTCTCCTGATAACAATTTATCACTTTTATGCGATTGCTCATTGATGATATAATATGGGTTAGAAGTTCGTTAGCGGAGAACATTTCGAGAAGTGGCTCAAGTTTCGTTGGTTTTTTTTGCGTGTGAACGGATTTCTCTTTGAAATGATACCTTTTTTCAAAAAGTGTCTGAAGGAGAGAAAAATATGACATCTGCTAGGTTTCCCACTTTCATCTCATATTTTTTTGAAACTTTTCGCTCAAAAATAATTGGATTCTAGGTTCCTCTTCGAATCTAAATTTTTTGAATTCCAGGATTTTGGAAATAACTGTTTTCTGGTTCATTGTATCTTCAATATTTTCATAGTTTCTTCCCAATTTTTCTAGCGAAACTTTTAAAACCCCATTTTTCTTGAGTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGGACAGCTGACAAGACT</pcr_primer_p1>
		<pcr_primer_p2>ATAAATTGTTATCAGGAGACAGC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGAAGGACAGCTGACAAGACTGATTCATTTCTCTTCCCCCTCTCCCTGGTTTTTTTCAGTTTCCTTCTCTTCTTTTGATTCCTCTTCTTCTACCTTTTCACCACTTAACTAAAATAACACGTCCGTTGTATTGGCCCCCATTTTATTTTTCTTTTCGGATCCTCGCCTGGTGGGTCCCTTCGGCCCAACTGACACTCCAATTCGTATATGAATGGAGTTTAAGATCGCTGTCTCCTGATAACAATTTAT</canonical_amplicon>
		<polymorphic_amplicon>AGAAGGACAGCTGACAAGACTGATTCATTTCTCTTCCCCCTCTCCCTGGTTTTTTTCAGTTTCCTTCTCTTCTTTTGATTCCTCTTCTTCTACCTTTTCACCACTTAACTAAAATAACACGTCCGTTKTATTGGCCCCCATTTTATTTTTCTTTTCGGATCCTCGCCTGGTGGGTCCCTTCGGCCCAACTGACACTCCAATTCGTATATGAATGGAGTTTAAGATCGCTGTCTCCTGATAACAATTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14044</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>177394</contig_pos>
        <strand>+</strand>
        <context>GATATTGTCG[C/G]CTTCCGAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAAGACGTCTGTTTTTGGTCCGAATCAAACCAGAATTATCGATATTGTCG</left_flank>
        <right_flank>CTTCCGAAGACGTCAGAACCGAACTTTCAGATACAGGGGATGTCAATTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATCTGATGAAAATGATCAGAAATCAAGGGGTTTCGGTTTTATTCGATGATGGAATTCCTGGTAAATTTCAAGAAAAATTAGGGAAAAATCCGATTCTTTCTAACTGTTTCGGGTCAAAAAATTCGAAAAATCGTAACTTTTTAGGCTGAAAATGTTAAAAATTTCAGAATACAAACCAAAAAACAAAAACTATAGTATCTGCTTTTTGCTACTCAAAGTTTAGAAATTTCCCGAAACGTAGCCGTGAAAATTACCATTTTCTAGATAAAAATTTCAGAGTTTCCTAGTCTAGGAAATTCTCTGAAAAAATCCAATTTTTTTCTGCAATTTTCTGCAAAGCGTCATCCGCTCATTTTCCATTTTCGGGCGTTTCAACGGTGCGGTCTGAAAATTGCCGATTTCAGATTTTTTTTGATAAGTCAATCTACCATTTTCTCTTCAGAATCTGAAGACGTCTGTTTTTGGTCCGAATCAAACCAGAATTATCGATATTGTCGGCTTCCGAAGACGTCAGAACCGAACTTTCAGATACAGGGGATGTCAATTTGAGATACAAAATTTTAGAATTTGTTGTCGATAATTCGTTGATTGCCAATCTTTGGATTTGGGATACCACAAAAATTAAGGAAATGTTTGATTGTTTATTTACCAGAATCAATTACATGATCTTGATTGATCCCTTCGGATATTGGAAAACCATGTGTGCCTGTGTTTCTCCAAAAGTTCTAAGCGATCAAAATGCAGAAAACAGTCGCACAACCCCTAGACGGCCCACGATCCAAGGGTACATCGAAAAAGGGTACATCGAGGGTACATCGAACCTATTCGAATTTTTAAAACTTTAGGTCCGTTGGAACATCACTTCTACAATAAAGTATGAAAATTCAACTATTCCCCGCATTGTCCGAGAAAAAATTTTCAACAGTTGTTATGATCTGAGCAGGTGAATTTTCTAAGTCAACCATCTTCCTAGATTCAGCTGGACTCAAGGTCTTTAA</canonical>
            <polymorphic>CTATCTGATGAAAATGATCAGAAATCAAGGGGTTTCGGTTTTATTCGATGATGGAATTCCTGGTAAATTTCAAGAAAAATTAGGGAAAAATCCGATTCTTTCTAACTGTTTCGGGTCAAAAAATTCGAAAAATCGTAACTTTTTAGGCTGAAAATGTTAAAAATTTCAGAATACAAACCAAAAAACAAAAACTATAGTATCTGCTTTTTGCTACTCAAAGTTTAGAAATTTCCCGAAACGTAGCCGTGAAAATTACCATTTTCTAGATAAAAATTTCAGAGTTTCCTAGTCTAGGAAATTCTCTGAAAAAATCCAATTTTTTTCTGCAATTTTCTGCAAAGCGTCATCCGCTCATTTTCCATTTTCGGGCGTTTCAACGGTGCGGTCTGAAAATTGCCGATTTCAGATTTTTTTTGATAAGTCAATCTACCATTTTCTCTTCAGAATCTGAAGACGTCTGTTTTTGGTCCGAATCAAACCAGAATTATCGATATTGTCGSCTTCCGAAGACGTCAGAACCGAACTTTCAGATACAGGGGATGTCAATTTGAGATACAAAATTTTAGAATTTGTTGTCGATAATTCGTTGATTGCCAATCTTTGGATTTGGGATACCACAAAAATTAAGGAAATGTTTGATTGTTTATTTACCAGAATCAATTACATGATCTTGATTGATCCCTTCGGATATTGGAAAACCATGTGTGCCTGTGTTTCTCCAAAAGTTCTAAGCGATCAAAATGCAGAAAACAGTCGCACAACCCCTAGACGGCCCACGATCCAAGGGTACATCGAAAAAGGGTACATCGAGGGTACATCGAACCTATTCGAATTTTTAAAACTTTAGGTCCGTTGGAACATCACTTCTACAATAAAGTATGAAAATTCAACTATTCCCCGCATTGTCCGAGAAAAAATTTTCAACAGTTGTTATGATCTGAGCAGGTGAATTTTCTAAGTCAACCATCTTCCTAGATTCAGCTGGACTCAAGGTCTTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>272 257 209 147 96 19</canonical_bands>
                <polymorphic_bands>529 209 147 96 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAATCTACCATTTTCTCTTCAG</pcr_primer_p1>
		<pcr_primer_p2>AAGATCATGTAATTGATTCTGGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCAATCTACCATTTTCTCTTCAGAATCTGAAGACGTCTGTTTTTGGTCCGAATCAAACCAGAATTATCGATATTGTCGGCTTCCGAAGACGTCAGAACCGAACTTTCAGATACAGGGGATGTCAATTTGAGATACAAAATTTTAGAATTTGTTGTCGATAATTCGTTGATTGCCAATCTTTGGATTTGGGATACCACAAAAATTAAGGAAATGTTTGATTGTTTATTTACCAGAATCAATTACATGATCTT</canonical_amplicon>
		<polymorphic_amplicon>TCAATCTACCATTTTCTCTTCAGAATCTGAAGACGTCTGTTTTTGGTCCGAATCAAACCAGAATTATCGATATTGTCGSCTTCCGAAGACGTCAGAACCGAACTTTCAGATACAGGGGATGTCAATTTGAGATACAAAATTTTAGAATTTGTTGTCGATAATTCGTTGATTGCCAATCTTTGGATTTGGGATACCACAAAAATTAAGGAAATGTTTGATTGTTTATTTACCAGAATCAATTACATGATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14045</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>235958</contig_pos>
        <strand>+</strand>
        <context>CACTAGGAAG[A/T]AAGGATTCAt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAATGGGAGTTATGGACATTCAGAAGAAAATAATTGGACCACTAGGAAG</left_flank>
        <right_flank>AAGGATTCATATTGTTGAATTTAAAAAAAGTGACACCTAAGAATTTGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGATTCTTTACAATAATTTGACAAAAGAAATTATTAAAACACCGAACAATTTGAGAAATTTTCGGTTTTCGAAAATTGCTTCAAAGTCGATCTCCTCTTTCATTTTTTGTCGGAACTAGCTGCTTTTGCACTTAAAATGCGTGTTTTAGCCTGTTTAATTTCTATGAACGAAAAATTGAAACAATTGTCGAAAAATGAGAAAATTTCGCTAAAAACCGGCTTTTCAGTGTAAAATTTTTTTTAAAAAAATTGTCGCCGCGCGCAACCGCGCTCCGCTGAGAAAAAGGCTTGCAGTTCATTTTGGGAGCTGGGGAGACCGTGACAGGGAATATTATGGTGAAAGTATTTATGAAAGTATTTACTATAGGAAATCATTGAGAATTTAGTGAAGGAAGCGCGCTCGGCTGACATGCTTTATAGACACAGAGACGCAGAAAAAGGGACTGGAGGAATGGGAGTTATGGACATTCAGAAGAAAATAATTGGACCACTAGGAAGAAAGGATTCATATTGTTGAATTTAAAAAAAGTGACACCTAAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAATAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTCGAGCTACTTTCACGTTTAAGTTTAGTTTTTTGCGGAAAAATAGATTCTAGAGCTGCTGGCGGTATTTTTATATCAAGAAATCAAAATTTTGTTCAGAAAATCCCACTGAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGAACCGTCTCCGAGATTTTCAGGTGTCACTTTTTTAAATCCGACAATAGGAAAAAATAAAAATGAAGAGAATAATATAGGTTTAAGAGTAGCTATGAATCTCAAGACTATCTATGAGTGAACCTTCTCCAAAATATTTCAGAAACTAGGTGACACGGAAACGTGAAAAATCGTTGGATGTCTGGGAACTTTTTTCTAAGTCGACAG</canonical>
            <polymorphic>TAGATTCTTTACAATAATTTGACAAAAGAAATTATTAAAACACCGAACAATTTGAGAAATTTTCGGTTTTCGAAAATTGCTTCAAAGTCGATCTCCTCTTTCATTTTTTGTCGGAACTAGCTGCTTTTGCACTTAAAATGCGTGTTTTAGCCTGTTTAATTTCTATGAACGAAAAATTGAAACAATTGTCGAAAAATGAGAAAATTTCGCTAAAAACCGGCTTTTCAGTGTAAAATTTTTTTTAAAAAAATTGTCGCCGCGCGCAACCGCGCTCCGCTGAGAAAAAGGCTTGCAGTTCATTTTGGGAGCTGGGGAGACCGTGACAGGGAATATTATGGTGAAAGTATTTATGAAAGTATTTACTATAGGAAATCATTGAGAATTTAGTGAAGGAAGCGCGCTCGGCTGACATGCTTTATAGACACAGAGACGCAGAAAAAGGGACTGGAGGAATGGGAGTTATGGACATTCAGAAGAAAATAATTGGACCACTAGGAAGWAAGGATTCATATTGTTGAATTTAAAAAAAGTGACACCTAAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAATAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTCGAGCTACTTTCACGTTTAAGTTTAGTTTTTTGCGGAAAAATAGATTCTAGAGCTGCTGGCGGTATTTTTATATCAAGAAATCAAAATTTTGTTCAGAAAATCCCACTGAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGAACCGTCTCCGAGATTTTCAGGTGTCACTTTTTTAAATCCGACAATAGGAAAAAATAAAAATGAAGAGAATAATATAGGTTTAAGAGTAGCTATGAATCTCAAGACTATCTATGAGTGAACCTTCTCCAAAATATTTCAGAAACTAGGTGACACGGAAACGTGAAAAATCGTTGGATGTCTGGGAACTTTTTTCTAAGTCGACAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGAATGGGAGTTATGGAC</pcr_primer_p1>
		<pcr_primer_p2>TCTTGAGATTCATAGCTACTCTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>453</pcr_amplicon_size>
		<canonical_amplicon>GAGGAATGGGAGTTATGGACATTCAGAAGAAAATAATTGGACCACTAGGAAGAAAGGATTCATATTGTTGAATTTAAAAAAAGTGACACCTAAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAATAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTCGAGCTACTTTCACGTTTAAGTTTAGTTTTTTGCGGAAAAATAGATTCTAGAGCTGCTGGCGGTATTTTTATATCAAGAAATCAAAATTTTGTTCAGAAAATCCCACTGAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGAACCGTCTCCGAGATTTTCAGGTGTCACTTTTTTAAATCCGACAATAGGAAAAAATAAAAATGAAGAGAATAATATAGGTTTAAGAGTAGCTATGAATCTCAAGA</canonical_amplicon>
		<polymorphic_amplicon>GAGGAATGGGAGTTATGGACATTCAGAAGAAAATAATTGGACCACTAGGAAGWAAGGATTCATATTGTTGAATTTAAAAAAAGTGACACCTAAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAATAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTCGAGCTACTTTCACGTTTAAGTTTAGTTTTTTGCGGAAAAATAGATTCTAGAGCTGCTGGCGGTATTTTTATATCAAGAAATCAAAATTTTGTTCAGAAAATCCCACTGAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGAACCGTCTCCGAGATTTTCAGGTGTCACTTTTTTAAATCCGACAATAGGAAAAAATAAAAATGAAGAGAATAATATAGGTTTAAGAGTAGCTATGAATCTCAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14046</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>236369</contig_pos>
        <strand>+</strand>
        <context>CTATCTATGA[C/G]TGAACCTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAGAATAATATAGGTTTAAGAGTAGCTATGAATCTCAAGACTATCTATGA</left_flank>
        <right_flank>TGAACCTTCTCCAAAATATTTCAGAAACTAGGTGACACGGAAACGTGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCTTTATAGACACAGAGACGCAGAAAAAGGGACTGGAGGAATGGGAGTTATGGACATTCAGAAGAAAATAATTGGACCACTAGGAAGAAAGGATTCATATTGTTGAATTTAAAAAAAGTGACACCTAAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAATAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTCGAGCTACTTTCACGTTTAAGTTTAGTTTTTTGCGGAAAAATAGATTCTAGAGCTGCTGGCGGTATTTTTATATCAAGAAATCAAAATTTTGTTCAGAAAATCCCACTGAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGAACCGTCTCCGAGATTTTCAGGTGTCACTTTTTTAAATCCGACAATAGGAAAAAATAAAAATGAAGAGAATAATATAGGTTTAAGAGTAGCTATGAATCTCAAGACTATCTATGAGTGAACCTTCTCCAAAATATTTCAGAAACTAGGTGACACGGAAACGTGAAAAATCGTTGGATGTCTGGGAACTTTTTTCTAAGTCGACAGTAGTTGGAAAGTTGAAAAACTATTTATTTTTCAACTTCGAGATGAGCAGTGATGAGCTACGCGATTCTCGTGGAATGCCACAAGTGAGGACTGCTGATCTCGTTTCTCATGAAACCTTAAATTCAGCCTGGATTCATTATCGAACATCAGAGCAGTGACCATAAGTGGAAAGTATTGCGTAATATCTACTCTGGACCATTTTCTGATGTCTATGTCGTTGCCGATGTTTGTTAACAAGCACAGAAATATCGACATTTTGAAAAATTTAGGTGGCAACGAATGAAAAGTACGCTATGAAATGCGAACGACAAGAAGGAAACTCGCGTCCTGTTTTGAAGCTTGATGTTTTAGTTTTGATGGCGACCAAAGGGCTAAAAGGGTTTCCAAAATTCGTGGCTGCTGGAAGAACTG</canonical>
            <polymorphic>TGCTTTATAGACACAGAGACGCAGAAAAAGGGACTGGAGGAATGGGAGTTATGGACATTCAGAAGAAAATAATTGGACCACTAGGAAGAAAGGATTCATATTGTTGAATTTAAAAAAAGTGACACCTAAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAATAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTCGAGCTACTTTCACGTTTAAGTTTAGTTTTTTGCGGAAAAATAGATTCTAGAGCTGCTGGCGGTATTTTTATATCAAGAAATCAAAATTTTGTTCAGAAAATCCCACTGAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGAACCGTCTCCGAGATTTTCAGGTGTCACTTTTTTAAATCCGACAATAGGAAAAAATAAAAATGAAGAGAATAATATAGGTTTAAGAGTAGCTATGAATCTCAAGACTATCTATGASTGAACCTTCTCCAAAATATTTCAGAAACTAGGTGACACGGAAACGTGAAAAATCGTTGGATGTCTGGGAACTTTTTTCTAAGTCGACAGTAGTTGGAAAGTTGAAAAACTATTTATTTTTCAACTTCGAGATGAGCAGTGATGAGCTACGCGATTCTCGTGGAATGCCACAAGTGAGGACTGCTGATCTCGTTTCTCATGAAACCTTAAATTCAGCCTGGATTCATTATCGAACATCAGAGCAGTGACCATAAGTGGAAAGTATTGCGTAATATCTACTCTGGACCATTTTCTGATGTCTATGTCGTTGCCGATGTTTGTTAACAAGCACAGAAATATCGACATTTTGAAAAATTTAGGTGGCAACGAATGAAAAGTACGCTATGAAATGCGAACGACAAGAAGGAAACTCGCGTCCTGTTTTGAAGCTTGATGTTTTAGTTTTGATGGCGACCAAAGGGCTAAAAGGGTTTCCAAAATTCGTGGCTGCTGGAAGAACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>123 93 93 91 73 71 67 59 49 46 41 32 32 28 21 16 13 10 10 9 8 6 3 3 3</canonical_bands>
                <polymorphic_bands>123 123 93 93 73 71 67 59 49 46 41 32 28 21 16 13 10 10 9 8 6 3 3 3</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 237 179 82</canonical_bands>
                <polymorphic_bands>584 237 179</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATAATTGGACCACTAGGA</pcr_primer_p1>
		<pcr_primer_p2>GACATCCAACGATTTTTCAC</pcr_primer_p2>
		<pcr_amplicon_size>500</pcr_amplicon_size>
		<canonical_amplicon>GAAAATAATTGGACCACTAGGAAGAAAGGATTCATATTGTTGAATTTAAAAAAAGTGACACCTAAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAATAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTCGAGCTACTTTCACGTTTAAGTTTAGTTTTTTGCGGAAAAATAGATTCTAGAGCTGCTGGCGGTATTTTTATATCAAGAAATCAAAATTTTGTTCAGAAAATCCCACTGAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGAACCGTCTCCGAGATTTTCAGGTGTCACTTTTTTAAATCCGACAATAGGAAAAAATAAAAATGAAGAGAATAATATAGGTTTAAGAGTAGCTATGAATCTCAAGACTATCTATGAGTGAACCTTCTCCAAAATATTTCAGAAACTAGGTGACACGGAAACGTGAAAAATCGTTGGATGTC</canonical_amplicon>
		<polymorphic_amplicon>GAAAATAATTGGACCACTAGGAAGAAAGGATTCATATTGTTGAATTTAAAAAAAGTGACACCTAAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAATAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTCGAGCTACTTTCACGTTTAAGTTTAGTTTTTTGCGGAAAAATAGATTCTAGAGCTGCTGGCGGTATTTTTATATCAAGAAATCAAAATTTTGTTCAGAAAATCCCACTGAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGAACCGTCTCCGAGATTTTCAGGTGTCACTTTTTTAAATCCGACAATAGGAAAAAATAAAAATGAAGAGAATAATATAGGTTTAAGAGTAGCTATGAATCTCAAGACTATCTATGASTGAACCTTCTCCAAAATATTTCAGAAACTAGGTGACACGGAAACGTGAAAAATCGTTGGATGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14047</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>353454</contig_pos>
        <strand>+</strand>
        <context>TATAAAACTC[C/T]GTTCGATTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAGGTAACAAAAAATAGTTCGATGAAAACCCGAAACGATATAAAACTC</left_flank>
        <right_flank>GTTCGATTCTTCGCCCCCTTTCTGTGTGCAACCATTTCCTTTTAAAATGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATTTTTGAATATTTTTCAACCTACAGTGATCCTTTTCATTTTCGAATAGTTTTGAAACTACAGTAATCCATTTCACTTTCGAGTAGTTTTCAACCGACAGTAACCTTTTTCATTTTCAAATGTTTTTTCAACTACATTAACCCTTTTCATTTCGGAACATTTTTCCACCTACAGTAATCCTTTTCAGAATTAAGCGAATTCCCAAGCGAATATTCTCATTATCATCTACTAAAAGGGAATTCCCGAATTTTTTCAACCTTTTCCGATTTTTCGAAGAATTTGGAGTTACATTTGTCACCAAAGTTTTCAGAGTTCGTTCAATTTCTGTAGTTTGAACCCTTATAATAACCACATAGGAGGAAACTTCTGAACATTTGAAACATCTTCAAAATCTAAAGTTTTGTATGCAACCACCATATTTTATCGCTTTTCCGGTCATAACTCTCTTTAAGGTAACAAAAAATAGTTCGATGAAAACCCGAAACGATATAAAACTCTGTTCGATTCTTCGCCCCCTTTCTGTGTGCAACCATTTCCTTTTAAAATGTTGCTTCTCCTTCTTTTTACTTCAATTCTAGCACGGATACCTGCCACTTCAGCAAGACAGGATATGTCATGGTTGAACTGCAACACATTGGTACTATAACTCTTTGGCTGAAACTCTAAAACAATAAATTTTTCAGAAGGGAGAAAACCTTCACTTTAAAATGATTCGATTCTCAAGGCCGATGGAAATCGGAGACAAAATTACAGTAACCGGAAAAGTCAACCATAATGCAAATATGTAAGTGCAACCCACAGAAGCAACATTTCCTATCTTCCCCAGGTCTTATGTCCACTTGTACCGTGGATTTGACAGTGTTTATGAAAGAAGTCCAGTTTCGATTCATGTGAGAGTTCAGTACAGAAGAAACTCGATCATCTATAATAGTTGGAATGTGAGTATACAGGCGCCTTAAGGCTTCCATGCGGGCGGGAAGTTTAGCCGGCCGACCGAC</canonical>
            <polymorphic>TCATTTTTGAATATTTTTCAACCTACAGTGATCCTTTTCATTTTCGAATAGTTTTGAAACTACAGTAATCCATTTCACTTTCGAGTAGTTTTCAACCGACAGTAACCTTTTTCATTTTCAAATGTTTTTTCAACTACATTAACCCTTTTCATTTCGGAACATTTTTCCACCTACAGTAATCCTTTTCAGAATTAAGCGAATTCCCAAGCGAATATTCTCATTATCATCTACTAAAAGGGAATTCCCGAATTTTTTCAACCTTTTCCGATTTTTCGAAGAATTTGGAGTTACATTTGTCACCAAAGTTTTCAGAGTTCGTTCAATTTCTGTAGTTTGAACCCTTATAATAACCACATAGGAGGAAACTTCTGAACATTTGAAACATCTTCAAAATCTAAAGTTTTGTATGCAACCACCATATTTTATCGCTTTTCCGGTCATAACTCTCTTTAAGGTAACAAAAAATAGTTCGATGAAAACCCGAAACGATATAAAACTCYGTTCGATTCTTCGCCCCCTTTCTGTGTGCAACCATTTCCTTTTAAAATGTTGCTTCTCCTTCTTTTTACTTCAATTCTAGCACGGATACCTGCCACTTCAGCAAGACAGGATATGTCATGGTTGAACTGCAACACATTGGTACTATAACTCTTTGGCTGAAACTCTAAAACAATAAATTTTTCAGAAGGGAGAAAACCTTCACTTTAAAATGATTCGATTCTCAAGGCCGATGGAAATCGGAGACAAAATTACAGTAACCGGAAAAGTCAACCATAATGCAAATATGTAAGTGCAACCCACAGAAGCAACATTTCCTATCTTCCCCAGGTCTTATGTCCACTTGTACCGTGGATTTGACAGTGTTTATGAAAGAAGTCCAGTTTCGATTCATGTGAGAGTTCAGTACAGAAGAAACTCGATCATCTATAATAGTTGGAATGTGAGTATACAGGCGCCTTAAGGCTTCCATGCGGGCGGGAAGTTTAGCCGGCCGACCGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAACCCTTATAATAACCACAT</pcr_primer_p1>
		<pcr_primer_p2>CGTGCTAGAATTGAAGTAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTGAACCCTTATAATAACCACATAGGAGGAAACTTCTGAACATTTGAAACATCTTCAAAATCTAAAGTTTTGTATGCAACCACCATATTTTATCGCTTTTCCGGTCATAACTCTCTTTAAGGTAACAAAAAATAGTTCGATGAAAACCCGAAACGATATAAAACTCTGTTCGATTCTTCGCCCCCTTTCTGTGTGCAACCATTTCCTTTTAAAATGTTGCTTCTCCTTCTTTTTACTTCAATTCTAGCACG</canonical_amplicon>
		<polymorphic_amplicon>TTGAACCCTTATAATAACCACATAGGAGGAAACTTCTGAACATTTGAAACATCTTCAAAATCTAAAGTTTTGTATGCAACCACCATATTTTATCGCTTTTCCGGTCATAACTCTCTTTAAGGTAACAAAAAATAGTTCGATGAAAACCCGAAACGATATAAAACTCYGTTCGATTCTTCGCCCCCTTTCTGTGTGCAACCATTTCCTTTTAAAATGTTGCTTCTCCTTCTTTTTACTTCAATTCTAGCACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14048</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>353570</contig_pos>
        <strand>+</strand>
        <context>ACAGGATATG[C/T]CATGGTTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTACTTCAATTCTAGCACGGATACCTGCCACTTCAGCAAGACAGGATATG</left_flank>
        <right_flank>CATGGTTGAACTGCAACACATTGGTACTATAACTCTTTGGCTGAAACTCT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAAATGTTTTTTCAACTACATTAACCCTTTTCATTTCGGAACATTTTTCCACCTACAGTAATCCTTTTCAGAATTAAGCGAATTCCCAAGCGAATATTCTCATTATCATCTACTAAAAGGGAATTCCCGAATTTTTTCAACCTTTTCCGATTTTTCGAAGAATTTGGAGTTACATTTGTCACCAAAGTTTTCAGAGTTCGTTCAATTTCTGTAGTTTGAACCCTTATAATAACCACATAGGAGGAAACTTCTGAACATTTGAAACATCTTCAAAATCTAAAGTTTTGTATGCAACCACCATATTTTATCGCTTTTCCGGTCATAACTCTCTTTAAGGTAACAAAAAATAGTTCGATGAAAACCCGAAACGATATAAAACTCTGTTCGATTCTTCGCCCCCTTTCTGTGTGCAACCATTTCCTTTTAAAATGTTGCTTCTCCTTCTTTTTACTTCAATTCTAGCACGGATACCTGCCACTTCAGCAAGACAGGATATGTCATGGTTGAACTGCAACACATTGGTACTATAACTCTTTGGCTGAAACTCTAAAACAATAAATTTTTCAGAAGGGAGAAAACCTTCACTTTAAAATGATTCGATTCTCAAGGCCGATGGAAATCGGAGACAAAATTACAGTAACCGGAAAAGTCAACCATAATGCAAATATGTAAGTGCAACCCACAGAAGCAACATTTCCTATCTTCCCCAGGTCTTATGTCCACTTGTACCGTGGATTTGACAGTGTTTATGAAAGAAGTCCAGTTTCGATTCATGTGAGAGTTCAGTACAGAAGAAACTCGATCATCTATAATAGTTGGAATGTGAGTATACAGGCGCCTTAAGGCTTCCATGCGGGCGGGAAGTTTAGCCGGCCGACCGACCGCAGCTCGGTCGGCAGTCACCGATTTTTAACCGTCCAAAATTGAAGCCTTACAGTAGTCACTTCAAAGATTTATTGAACAATTTCAGGGAAGATGGGGACCAGAGGAATTTGGAA</canonical>
            <polymorphic>TTCAAATGTTTTTTCAACTACATTAACCCTTTTCATTTCGGAACATTTTTCCACCTACAGTAATCCTTTTCAGAATTAAGCGAATTCCCAAGCGAATATTCTCATTATCATCTACTAAAAGGGAATTCCCGAATTTTTTCAACCTTTTCCGATTTTTCGAAGAATTTGGAGTTACATTTGTCACCAAAGTTTTCAGAGTTCGTTCAATTTCTGTAGTTTGAACCCTTATAATAACCACATAGGAGGAAACTTCTGAACATTTGAAACATCTTCAAAATCTAAAGTTTTGTATGCAACCACCATATTTTATCGCTTTTCCGGTCATAACTCTCTTTAAGGTAACAAAAAATAGTTCGATGAAAACCCGAAACGATATAAAACTCTGTTCGATTCTTCGCCCCCTTTCTGTGTGCAACCATTTCCTTTTAAAATGTTGCTTCTCCTTCTTTTTACTTCAATTCTAGCACGGATACCTGCCACTTCAGCAAGACAGGATATGYCATGGTTGAACTGCAACACATTGGTACTATAACTCTTTGGCTGAAACTCTAAAACAATAAATTTTTCAGAAGGGAGAAAACCTTCACTTTAAAATGATTCGATTCTCAAGGCCGATGGAAATCGGAGACAAAATTACAGTAACCGGAAAAGTCAACCATAATGCAAATATGTAAGTGCAACCCACAGAAGCAACATTTCCTATCTTCCCCAGGTCTTATGTCCACTTGTACCGTGGATTTGACAGTGTTTATGAAAGAAGTCCAGTTTCGATTCATGTGAGAGTTCAGTACAGAAGAAACTCGATCATCTATAATAGTTGGAATGTGAGTATACAGGCGCCTTAAGGCTTCCATGCGGGCGGGAAGTTTAGCCGGCCGACCGACCGCAGCTCGGTCGGCAGTCACCGATTTTTAACCGTCCAAAATTGAAGCCTTACAGTAGTCACTTCAAAGATTTATTGAACAATTTCAGGGAAGATGGGGACCAGAGGAATTTGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGCTTCTCCTTCTTTTTACTT</pcr_primer_p1>
		<pcr_primer_p2>GTTGCACTTACATATTTGCATTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTGCTTCTCCTTCTTTTTACTTCAATTCTAGCACGGATACCTGCCACTTCAGCAAGACAGGATATGTCATGGTTGAACTGCAACACATTGGTACTATAACTCTTTGGCTGAAACTCTAAAACAATAAATTTTTCAGAAGGGAGAAAACCTTCACTTTAAAATGATTCGATTCTCAAGGCCGATGGAAATCGGAGACAAAATTACAGTAACCGGAAAAGTCAACCATAATGCAAATATGTAAGTGCAAC</canonical_amplicon>
		<polymorphic_amplicon>GTTGCTTCTCCTTCTTTTTACTTCAATTCTAGCACGGATACCTGCCACTTCAGCAAGACAGGATATGYCATGGTTGAACTGCAACACATTGGTACTATAACTCTTTGGCTGAAACTCTAAAACAATAAATTTTTCAGAAGGGAGAAAACCTTCACTTTAAAATGATTCGATTCTCAAGGCCGATGGAAATCGGAGACAAAATTACAGTAACCGGAAAAGTCAACCATAATGCAAATATGTAAGTGCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14093</snp_id>
        <super_contig>c007700947.Contig1</super_contig>
        <contig_pos>33453</contig_pos>
        <strand>+</strand>
        <context>AAAATTATTT[G/T]AAATCGTCGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTTGAGGTTTTCCAATTTTTTCGGCTGAATATAAGCTTAAAATTATTT</left_flank>
        <right_flank>AAATCGTCGAAAAATGGTCTTAAACCGGCTGAAAATATGAGAAATCCTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAAAAACTTTCAAAAAAACCGAAGTTTTAAAGGGGATTTTCTTCGTATTTTTCGCAAAATTGTTAGACCTTTTTAGGTTTTCCAGCTATTTTTAAAGATCTTTTTTCGATTTTTCCGAATGTTTTACCTGCAATTCGATTGGAAGGTGTTCGCAGGGATTACTGTAGAAAACTGTTTTCCCTTTTGTAGTTATTTTTGCTAACACCTTCACGTCAAAATGCGGACGACAACTTTGTTGCAAAAAAAACAAACTTCAAAATTTGTAAAATACAATTTTTCTACCGTAATCTTCACGACCGTCCCATCGATTTGCAGACAAAAAACCCGAGAAAATGGAAAACGAATCATTAAAAACAACTGAAAAACCTAAAAAGGTCTAAGAATTTTGCGAAAAAACGAAGAAAGTTCCATTCAAACTTGGGATTTTTTAAAACTTTTTGAAGCGATTTTTTGAGGTTTTCCAATTTTTTCGGCTGAATATAAGCTTAAAATTATTTGAAATCGTCGAAAAATGGTCTTAAACCGGCTGAAAATATGAGAAATCCTTTTAAACTGAATTCTTGGCCCAATTTCTCCATATTCTATGCACCTTGGCCGTCGAATCATCCTCCAGCGTGATGGTTCCCAGTTTCAAATCCTTCATCAAATCGTTGCATGCCATAAAACGAAAATCCTTGTCCGGATTGGCCATTTTGTCGACGAGCTGTCCGACATGATAGGCACTCATCTGCAACATCTTTTGGCGTTTAGGAATGAAAAAGCAGCTAGAAATTGAAGAAAGATAACCAGGTGAACTGGTAGAGGAAAACTGAAAAAAAGGACAAAAAATCTGAAATCTTCTGGAACACATCGATTTTTCATCGGGAAAAAAACTGATAAGGAAAAAACACTGGTGGGGGCTCAACAATAACGGGAAAATGGCTAGGAATGGAGGAAAAAACAGGAGACAACAATGGGTGGGGAAAACACACGAAGAACACAAAATTCCAAATTTCAGA</canonical>
            <polymorphic>GGAAAAAACTTTCAAAAAAACCGAAGTTTTAAAGGGGATTTTCTTCGTATTTTTCGCAAAATTGTTAGACCTTTTTAGGTTTTCCAGCTATTTTTAAAGATCTTTTTTCGATTTTTCCGAATGTTTTACCTGCAATTCGATTGGAAGGTGTTCGCAGGGATTACTGTAGAAAACTGTTTTCCCTTTTGTAGTTATTTTTGCTAACACCTTCACGTCAAAATGCGGACGACAACTTTGTTGCAAAAAAAACAAACTTCAAAATTTGTAAAATACAATTTTTCTACCGTAATCTTCACGACCGTCCCATCGATTTGCAGACAAAAAACCCGAGAAAATGGAAAACGAATCATTAAAAACAACTGAAAAACCTAAAAAGGTCTAAGAATTTTGCGAAAAAACGAAGAAAGTTCCATTCAAACTTGGGATTTTTTAAAACTTTTTGAAGCGATTTTTTGAGGTTTTCCAATTTTTTCGGCTGAATATAAGCTTAAAATTATTTKAAATCGTCGAAAAATGGTCTTAAACCGGCTGAAAATATGAGAAATCCTTTTAAACTGAATTCTTGGCCCAATTTCTCCATATTCTATGCACCTTGGCCGTCGAATCATCCTCCAGCGTGATGGTTCCCAGTTTCAAATCCTTCATCAAATCGTTGCATGCCATAAAACGAAAATCCTTGTCCGGATTGGCCATTTTGTCGACGAGCTGTCCGACATGATAGGCACTCATCTGCAACATCTTTTGGCGTTTAGGAATGAAAAAGCAGCTAGAAATTGAAGAAAGATAACCAGGTGAACTGGTAGAGGAAAACTGAAAAAAAGGACAAAAAATCTGAAATCTTCTGGAACACATCGATTTTTCATCGGGAAAAAAACTGATAAGGAAAAAACACTGGTGGGGGCTCAACAATAACGGGAAAATGGCTAGGAATGGAGGAAAAAACAGGAGACAACAATGGGTGGGGAAAACACACGAAGAACACAAAATTCCAAATTTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTTTTTGAAGCGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>GGACAAGGATTTTCGTTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACTTTTTGAAGCGATTTTTTGAGGTTTTCCAATTTTTTCGGCTGAATATAAGCTTAAAATTATTTGAAATCGTCGAAAAATGGTCTTAAACCGGCTGAAAATATGAGAAATCCTTTTAAACTGAATTCTTGGCCCAATTTCTCCATATTCTATGCACCTTGGCCGTCGAATCATCCTCCAGCGTGATGGTTCCCAGTTTCAAATCCTTCATCAAATCGTTGCATGCCATAAAACGAAAATCCTTGTCC</canonical_amplicon>
		<polymorphic_amplicon>AAACTTTTTGAAGCGATTTTTTGAGGTTTTCCAATTTTTTCGGCTGAATATAAGCTTAAAATTATTTKAAATCGTCGAAAAATGGTCTTAAACCGGCTGAAAATATGAGAAATCCTTTTAAACTGAATTCTTGGCCCAATTTCTCCATATTCTATGCACCTTGGCCGTCGAATCATCCTCCAGCGTGATGGTTCCCAGTTTCAAATCCTTCATCAAATCGTTGCATGCCATAAAACGAAAATCCTTGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14094</snp_id>
        <super_contig>c007700947.Contig1</super_contig>
        <contig_pos>33408</contig_pos>
        <strand></strand>
        <context>GCGATTTTTT[G/A]AGGTTTTCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAGTTCCATTCAAACTTGGGATTTTTTAAAACTTTTTGAAGCGATTTTTT</left_flank>
        <right_flank>AGGTTTTCCAATTTTTTCGGCTGAATATAAGCTTAAAATTATTTGAAATC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCCGAATTTTGTACCACTTTCAGTTGATTTCGGATAGTTTTTAGGGAAAAAACTTTCAAAAAAACCGAAGTTTTAAAGGGGATTTTCTTCGTATTTTTCGCAAAATTGTTAGACCTTTTTAGGTTTTCCAGCTATTTTTAAAGATCTTTTTTCGATTTTTCCGAATGTTTTACCTGCAATTCGATTGGAAGGTGTTCGCAGGGATTACTGTAGAAAACTGTTTTCCCTTTTGTAGTTATTTTTGCTAACACCTTCACGTCAAAATGCGGACGACAACTTTGTTGCAAAAAAAACAAACTTCAAAATTTGTAAAATACAATTTTTCTACCGTAATCTTCACGACCGTCCCATCGATTTGCAGACAAAAAACCCGAGAAAATGGAAAACGAATCATTAAAAACAACTGAAAAACCTAAAAAGGTCTAAGAATTTTGCGAAAAAACGAAGAAAGTTCCATTCAAACTTGGGATTTTTTAAAACTTTTTGAAGCGATTTTTTGAGGTTTTCCAATTTTTTCGGCTGAATATAAGCTTAAAATTATTTGAAATCGTCGAAAAATGGTCTTAAACCGGCTGAAAATATGAGAAATCCTTTTAAACTGAATTCTTGGCCCAATTTCTCCATATTCTATGCACCTTGGCCGTCGAATCATCCTCCAGCGTGATGGTTCCCAGTTTCAAATCCTTCATCAAATCGTTGCATGCCATAAAACGAAAATCCTTGTCCGGATTGGCCATTTTGTCGACGAGCTGTCCGACATGATAGGCACTCATCTGCAACATCTTTTGGCGTTTAGGAATGAAAAAGCAGCTAGAAATTGAAGAAAGATAACCAGGTGAACTGGTAGAGGAAAACTGAAAAAAAGGACAAAAAATCTGAAATCTTCTGGAACACATCGATTTTTCATCGGGAAAAAAACTGATAAGGAAAAAACACTGGTGGGGGCTCAACAATAACGGGAAAATGGCTAGGAATGGAGGAAAAAACAGGAGACAACAA</canonical>
            <polymorphic>TGCCGAATTTTGTACCACTTTCAGTTGATTTCGGATAGTTTTTAGGGAAAAAACTTTCAAAAAAACCGAAGTTTTAAAGGGGATTTTCTTCGTATTTTTCGCAAAATTGTTAGACCTTTTTAGGTTTTCCAGCTATTTTTAAAGATCTTTTTTCGATTTTTCCGAATGTTTTACCTGCAATTCGATTGGAAGGTGTTCGCAGGGATTACTGTAGAAAACTGTTTTCCCTTTTGTAGTTATTTTTGCTAACACCTTCACGTCAAAATGCGGACGACAACTTTGTTGCAAAAAAAACAAACTTCAAAATTTGTAAAATACAATTTTTCTACCGTAATCTTCACGACCGTCCCATCGATTTGCAGACAAAAAACCCGAGAAAATGGAAAACGAATCATTAAAAACAACTGAAAAACCTAAAAAGGTCTAAGAATTTTGCGAAAAAACGAAGAAAGTTCCATTCAAACTTGGGATTTTTTAAAACTTTTTGAAGCGATTTTTTRAGGTTTTCCAATTTTTTCGGCTGAATATAAGCTTAAAATTATTTGAAATCGTCGAAAAATGGTCTTAAACCGGCTGAAAATATGAGAAATCCTTTTAAACTGAATTCTTGGCCCAATTTCTCCATATTCTATGCACCTTGGCCGTCGAATCATCCTCCAGCGTGATGGTTCCCAGTTTCAAATCCTTCATCAAATCGTTGCATGCCATAAAACGAAAATCCTTGTCCGGATTGGCCATTTTGTCGACGAGCTGTCCGACATGATAGGCACTCATCTGCAACATCTTTTGGCGTTTAGGAATGAAAAAGCAGCTAGAAATTGAAGAAAGATAACCAGGTGAACTGGTAGAGGAAAACTGAAAAAAAGGACAAAAAATCTGAAATCTTCTGGAACACATCGATTTTTCATCGGGAAAAAAACTGATAAGGAAAAAACACTGGTGGGGGCTCAACAATAACGGGAAAATGGCTAGGAATGGAGGAAAAAACAGGAGACAACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGATTTCGGATAGTTTTTAGG</pcr_primer_p1>
		<pcr_primer_p2>AGACCATTTTTCGACGATTT</pcr_primer_p2>
		<pcr_amplicon_size>541</pcr_amplicon_size>
		<canonical_amplicon>TTGATTTCGGATAGTTTTTAGGGAAAAAACTTTCAAAAAAACCGAAGTTTTAAAGGGGATTTTCTTCGTATTTTTCGCAAAATTGTTAGACCTTTTTAGGTTTTCCAGCTATTTTTAAAGATCTTTTTTCGATTTTTCCGAATGTTTTACCTGCAATTCGATTGGAAGGTGTTCGCAGGGATTACTGTAGAAAACTGTTTTCCCTTTTGTAGTTATTTTTGCTAACACCTTCACGTCAAAATGCGGACGACAACTTTGTTGCAAAAAAAACAAACTTCAAAATTTGTAAAATACAATTTTTCTACCGTAATCTTCACGACCGTCCCATCGATTTGCAGACAAAAAACCCGAGAAAATGGAAAACGAATCATTAAAAACAACTGAAAAACCTAAAAAGGTCTAAGAATTTTGCGAAAAAACGAAGAAAGTTCCATTCAAACTTGGGATTTTTTAAAACTTTTTGAAGCGATTTTTTGAGGTTTTCCAATTTTTTCGGCTGAATATAAGCTTAAAATTATTTGAAATCGTCGAAAAATGGTCT</canonical_amplicon>
		<polymorphic_amplicon>TTGATTTCGGATAGTTTTTAGGGAAAAAACTTTCAAAAAAACCGAAGTTTTAAAGGGGATTTTCTTCGTATTTTTCGCAAAATTGTTAGACCTTTTTAGGTTTTCCAGCTATTTTTAAAGATCTTTTTTCGATTTTTCCGAATGTTTTACCTGCAATTCGATTGGAAGGTGTTCGCAGGGATTACTGTAGAAAACTGTTTTCCCTTTTGTAGTTATTTTTGCTAACACCTTCACGTCAAAATGCGGACGACAACTTTGTTGCAAAAAAAACAAACTTCAAAATTTGTAAAATACAATTTTTCTACCGTAATCTTCACGACCGTCCCATCGATTTGCAGACAAAAAACCCGAGAAAATGGAAAACGAATCATTAAAAACAACTGAAAAACCTAAAAAGGTCTAAGAATTTTGCGAAAAAACGAAGAAAGTTCCATTCAAACTTGGGATTTTTTAAAACTTTTTGAAGCGATTTTTTRAGGTTTTCCAATTTTTTCGGCTGAATATAAGCTTAAAATTATTTGAAATCGTCGAAAAATGGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14095</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>12012</contig_pos>
        <strand>-</strand>
        <context>AATTTRAAAA[C/T]TGAGCTAGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAA</left_flank>
        <right_flank>TGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAAAAAGAAAATTTTTGGTGGGAAAAAATTATTTTTTTTTAATAAATAAAAAAATATCATAAGACGCCAGGTTTCTGAGAAAATGTGACAAAGAAAA</canonical>
            <polymorphic>ACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAYTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAAAAAGAAAATTTTTGGTGGGAAAAAATTATTTTTTTTTAATAAATAAAAAAATATCATAAGACGCCAGGTTTCTGAGAAAATGTGACAAAGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>149 98 77 71 67 60 59 49 41 41 38 37 36 36 25 21 18 18 12 10 8 7 6 6 6 4</canonical_bands>
                <polymorphic_bands>149 113 98 71 67 60 59 49 41 41 38 37 36 25 21 18 18 12 10 8 7 6 6 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>ATTTGAGATCACCAGCACAT</pcr_primer_p2>
		<pcr_amplicon_size>458</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAAT</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAYTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14096</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>12007</contig_pos>
        <strand>-</strand>
        <context>TCCAAAATTT[A/G]AAAAYTGAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTT</left_flank>
        <right_flank>AAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAAAAAGAAAATTTTTGGTGGGAAAAAATTATTTTTTTTTAATAAATAAAAAAATATCATAAGACGCCAGGTTTCTGAGAAAATGTGACAAA</canonical>
            <polymorphic>ATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTRAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAAAAAGAAAATTTTTGGTGGGAAAAAATTATTTTTTTTTAATAAATAAAAAAATATCATAAGACGCCAGGTTTCTGAGAAAATGTGACAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 225 153 122</canonical_bands>
                <polymorphic_bands>725 153 122</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>366 225 121 80 53 45 37 31 26 16</canonical_bands>
                <polymorphic_bands>366 262 121 80 53 45 31 26 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>ATTTGAGATCACCAGCACAT</pcr_primer_p2>
		<pcr_amplicon_size>458</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAAT</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTRAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14097</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11996</contig_pos>
        <strand>-</strand>
        <context>CTCCYAAATG[C/G]TCCAAAATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATG</left_flank>
        <right_flank>TCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAAAAAGAAAATTTTTGGTGGGAAAAAATTATTTTTTTTTAATAAATAAAAAAATATCATAAGACGCCAGGTTTCTGAGAA</canonical>
            <polymorphic>AATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGSTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAAAAAGAAAATTTTTGGTGGGAAAAAATTATTTTTTTTTAATAAATAAAAAAATATCATAAGACGCCAGGTTTCTGAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>499 268 118 115</canonical_bands>
                <polymorphic_bands>617 268 115</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>499 268 118 115</canonical_bands>
                <polymorphic_bands>617 268 115</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGSTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14098</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11990</contig_pos>
        <strand>-</strand>
        <context>TTTTTGCTCC[C/T]AAATGSTCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCC</left_flank>
        <right_flank>AAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAAAAAGAAAATTTTTGGTGGGAAAAAATTATTTTTTTTTAATAAATAAAAAAATATCATAAGACGCCAGGTTTC</canonical>
            <polymorphic>AATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCYAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAAAAAGAAAATTTTTGGTGGGAAAAAATTATTTTTTTTTAATAAATAAAAAAATATCATAAGACGCCAGGTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>303 230 145 106 84 65 47 20</canonical_bands>
                <polymorphic_bands>303 230 171 145 84 47 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCYAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14099</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11975</contig_pos>
        <strand>-</strand>
        <context>GGACAAATTG[A/T]GCTCTTTTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTG</left_flank>
        <right_flank>GCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAAAAAGAAAATTTTTGGTGGGAAAAAATTATTTTTTTTTAATAAATAAAAAAATATCAT</canonical>
            <polymorphic>GGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGWGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAAAAAGAAAATTTTTGGTGGGAAAAAATTATTTTTTTTTAATAAATAAAAAAATATCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>459 150 134 77 69 40 32 31 8</canonical_bands>
                <polymorphic_bands>459 150 134 109 77 32 31 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>497 214 149 71 69</canonical_bands>
                <polymorphic_bands>566 214 149 71</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>497 223 140 71 69</canonical_bands>
                <polymorphic_bands>566 223 140 71</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>497 214 140 71 69 9</canonical_bands>
                <polymorphic_bands>566 214 140 71 9</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>253 206 150 77 71 69 63 40 32 31 8</canonical_bands>
                <polymorphic_bands>253 206 150 109 77 71 63 32 31 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>499 361 71 69</canonical_bands>
                <polymorphic_bands>568 361 71</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGWGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14100</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11959</contig_pos>
        <strand>-</strand>
        <context>AAAATTGAGK[C/T]AAATAGGACA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGC</left_flank>
        <right_flank>AAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAAAAAGAAAATTTTTGGTGGGAAAAAATTATTTTTTTTTAATA</canonical>
            <polymorphic>GGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCYAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAAAAAGAAAATTTTTGGTGGGAAAAAATTATTTTTTTTTAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCYAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14101</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11958</contig_pos>
        <strand>-</strand>
        <context>YAAAATTGAG[G/T]YAAATAGGAC</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAG</left_flank>
        <right_flank>GAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAAAAAGAAAATTTTTGGTGGGAAAAAATTATTTTTTTTTAAT</canonical>
            <polymorphic>AGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGKGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAAAAAGAAAATTTTTGGTGGGAAAAAATTATTTTTTTTTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGKGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14103</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11945</contig_pos>
        <strand>-</strand>
        <context>WCASWAAAAT[A/G]TCYAAAATTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAAT</left_flank>
        <right_flank>TCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAAAAAGAAAATTTTTGGTGGGAAAAAATT</canonical>
            <polymorphic>AGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATRTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAAAAAGAAAATTTTTGGTGGGAAAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>254 196 134 101 88 60 35 34 22 22 21 18 8 7</canonical_bands>
                <polymorphic_bands>254 196 194 101 88 35 34 22 22 21 18 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>168 124 71 63 60 55 51 50 40 39 34 32 26 25 22 22 19 18 17 17 10 9 9 8 7 4</canonical_bands>
                <polymorphic_bands>168 124 72 71 60 55 51 50 40 39 34 32 26 25 22 22 19 18 17 17 10 9 8 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATRTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14104</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11939</contig_pos>
        <strand>-</strand>
        <context>GAAYATWCAS[A/T]AAAATRTCYA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACAC</left_flank>
        <right_flank>AAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAAAAAGAAAATTTTTGGTGGGAA</canonical>
            <polymorphic>AATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACWAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAAAAAGAAAATTTTTGGTGGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACWAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14105</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11938</contig_pos>
        <strand>-</strand>
        <context>TGAAYATWCA[C/G]WAAAATRTCY</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACA</left_flank>
        <right_flank>TAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAAAAAGAAAATTTTTGGTGGGA</canonical>
            <polymorphic>AAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACASTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAAAAAGAAAATTTTTGGTGGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>149 98 81 77 71 60 59 49 41 41 38 37 36 36 25 21 18 18 12 8 6 6 6 4 3</canonical_bands>
                <polymorphic_bands>226 98 81 71 60 59 49 41 41 38 37 36 36 25 21 18 18 12 8 6 6 6 4 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACASTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14106</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11935</contig_pos>
        <strand>-</strand>
        <context>GKTTGAAYAT[A/T]CASWAAAATR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGAT</left_flank>
        <right_flank>CACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAAAAAGAAAATTTTTGGTG</canonical>
            <polymorphic>ATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATWCACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAAAAAGAAAATTTTTGGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATWCACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14107</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11932</contig_pos>
        <strand>-</strand>
        <context>TCTGKTTGAA[C/T]ATWCASWAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAA</left_flank>
        <right_flank>ATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAAAAAGAAAATTTTTG</canonical>
            <polymorphic>GATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAYATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAAAAAGAAAATTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAYATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14108</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11926</contig_pos>
        <strand>-</strand>
        <context>TMRYAWTCTG[G/T]TTGAAYATWC</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTG</left_flank>
        <right_flank>TTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAAAAAGAAAA</canonical>
            <polymorphic>AATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGKTTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAAAAAGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>303 230 111 106 84 81 65 20</canonical_bands>
                <polymorphic_bands>303 230 149 111 106 81 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGKTTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14109</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11921</contig_pos>
        <strand>-</strand>
        <context>YGWACTMRYA[A/T]TCTGKTTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGA</left_flank>
        <right_flank>TCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAAAAA</canonical>
            <polymorphic>AGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGAWTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGAWTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14110</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11919</contig_pos>
        <strand>-</strand>
        <context>TCYGWACTMR[C/T]AWTCTGKTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGC</left_flank>
        <right_flank>ATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAAA</canonical>
            <polymorphic>ATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCYATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCYATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14111</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11918</contig_pos>
        <strand>-</strand>
        <context>CTCYGWACTM[A/G]YAWTCTGKTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTG</left_flank>
        <right_flank>GATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAA</canonical>
            <polymorphic>GATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGRGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGRGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14112</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11917</contig_pos>
        <strand>-</strand>
        <context>GCTCYGWACT[A/C]RYAWTCTGKT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACT</left_flank>
        <right_flank>CGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTA</canonical>
            <polymorphic>GGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTMCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTMCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14113</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11913</contig_pos>
        <strand>-</strand>
        <context>ATGAGCTCYG[A/T]ACTMRYAWTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAG</left_flank>
        <right_flank>ACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAG</canonical>
            <polymorphic>AGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGWACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGTACT</site>
                <isoschizomers>
                    <enzyme>Acc113I</enzyme>
                    <enzyme>ScaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 398 102</canonical_bands>
                <polymorphic_bands>898 102</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 286 112 102</canonical_bands>
                <polymorphic_bands>786 112 102</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>498 398 104</canonical_bands>
                <polymorphic_bands>896 104</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGWACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14114</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11911</contig_pos>
        <strand>-</strand>
        <context>TCATGAGCTC[C/T]GWACTMRYAW</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTC</left_flank>
        <right_flank>GTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTA</canonical>
            <polymorphic>TGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCYGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGTACT</site>
                <isoschizomers>
                    <enzyme>Acc113I</enzyme>
                    <enzyme>ScaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 398 100</canonical_bands>
                <polymorphic_bands>900 100</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 306 146 45</canonical_bands>
                <polymorphic_bands>649 306 45</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 398 102</canonical_bands>
                <polymorphic_bands>898 102</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCYGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14115</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11894</contig_pos>
        <strand>-</strand>
        <context>GGGTATCAAA[A/G]GAAAGCTCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAA</left_flank>
        <right_flank>GAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTA</canonical>
            <polymorphic>GCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAARGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAARGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14116</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11882</contig_pos>
        <strand>-</strand>
        <context>ATAMGGCAAT[A/T]TGGGTATCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAAT</left_flank>
        <right_flank>TGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTC</canonical>
            <polymorphic>TTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATWTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>168 124 114 71 63 60 55 50 40 39 32 26 25 22 19 18 17 14 10 9 9 8 7</canonical_bands>
                <polymorphic_bands>168 134 124 114 60 55 50 40 39 32 26 25 22 19 18 17 14 10 9 9 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATWTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14117</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11875</contig_pos>
        <strand>-</strand>
        <context>GAGCTAYATA[A/C]GGCAATWTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATA</left_flank>
        <right_flank>GGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTT</canonical>
            <polymorphic>GCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATAMGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATAMGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14118</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11871</contig_pos>
        <strand>-</strand>
        <context>AAATGAGCTA[C/T]ATAMGGCAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTA</left_flank>
        <right_flank>ATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAAT</canonical>
            <polymorphic>TAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAYATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>194 186 168 163 149 140</canonical_bands>
                <polymorphic_bands>289 194 186 168 163</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAYATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14119</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11855</contig_pos>
        <strand>-</strand>
        <context>ATGCTCCAAA[A/G]TTCAAAAATG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAA</left_flank>
        <right_flank>TTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAG</canonical>
            <polymorphic>TTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAARTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAARTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14120</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11841</contig_pos>
        <strand>-</strand>
        <context>TTGGAGCTCT[C/G]AAAATGCTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCT</left_flank>
        <right_flank>AAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTT</canonical>
            <polymorphic>AAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTSAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>303 230 196 106 84 65 16</canonical_bands>
                <polymorphic_bands>387 230 196 106 65 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTSAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14123</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11813</contig_pos>
        <strand>-</strand>
        <context>TTTWYAATTT[A/C]GAGKGTTTRG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTT</left_flank>
        <right_flank>GAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTAC</canonical>
            <polymorphic>CGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTMGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTMGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14124</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11807</contig_pos>
        <strand>-</strand>
        <context>TTGAAATTTW[C/T]AATTTMGAGK</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTT</left_flank>
        <right_flank>AATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGAT</canonical>
            <polymorphic>AGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTYAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>254 195 175 134 88 60 44 35 8 7</canonical_bands>
                <polymorphic_bands>254 195 175 141 88 60 44 35 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTYAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14125</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11806</contig_pos>
        <strand>-</strand>
        <context>RTTGAAATTT[A/T]YAATTTMGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTT</left_flank>
        <right_flank>GAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGA</canonical>
            <polymorphic>AAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTWGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTWGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14126</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11796</contig_pos>
        <strand>-</strand>
        <context>AKAKCGYAYT[A/G]TTGAAATTTW</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAAT</left_flank>
        <right_flank>TTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCT</canonical>
            <polymorphic>ATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATRTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>394 231 136 107 106 10 8 8</canonical_bands>
                <polymorphic_bands>394 337 136 107 10 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATRTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14127</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11794</contig_pos>
        <strand>-</strand>
        <context>AWAKAKCGYA[C/T]TRTTGAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAA</left_flank>
        <right_flank>TCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGAC</canonical>
            <polymorphic>AAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAYTCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAYTCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14128</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11792</contig_pos>
        <strand>-</strand>
        <context>WAAWAKAKCG[C/T]AYTRTTGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCG</left_flank>
        <right_flank>AATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCG</canonical>
            <polymorphic>CCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGYAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGYAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14129</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11789</contig_pos>
        <strand>-</strand>
        <context>GTTWAAWAKA[G/T]CGYAYTRTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACA</left_flank>
        <right_flank>CGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACG</canonical>
            <polymorphic>GTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACAKCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>149 143 98 77 71 60 59 49 48 41 39 38 36 25 18 12 8 7 6 6 6 4</canonical_bands>
                <polymorphic_bands>190 143 98 77 71 60 59 49 48 39 38 36 25 18 12 8 7 6 6 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACAKCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14130</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11787</contig_pos>
        <strand>-</strand>
        <context>TTGTTWAAWA[G/T]AKCGYAYTRT</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAA</left_flank>
        <right_flank>ACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTA</canonical>
            <polymorphic>GGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAAKACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>149 143 98 77 71 60 59 50 49 41 39 38 36 25 18 12 8 6 6 6 5 4</canonical_bands>
                <polymorphic_bands>190 143 98 77 71 60 59 50 49 39 38 36 25 18 12 8 6 6 6 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAAKACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14131</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11785</contig_pos>
        <strand>-</strand>
        <context>AATTGTTWAA[A/T]AKAKCGYAYT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAA</left_flank>
        <right_flank>ACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATT</canonical>
            <polymorphic>GTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAWACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>344 278 225 153</canonical_bands>
                <polymorphic_bands>378 344 278</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAWACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14132</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11782</contig_pos>
        <strand>-</strand>
        <context>AKAAATTGTT[A/T]AAWAKAKCGY</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTT</left_flank>
        <right_flank>AAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTG</canonical>
            <polymorphic>AATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTWAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>347 275 225 153</canonical_bands>
                <polymorphic_bands>378 347 275</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>346 239 225 80 37 31 26 16</canonical_bands>
                <polymorphic_bands>346 251 239 80 37 31 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTWAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14133</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11773</contig_pos>
        <strand>-</strand>
        <context>MTAYCGCMGA[G/T]AAATTGTTWA</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGA</left_flank>
        <right_flank>AAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAA</canonical>
            <polymorphic>AAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAKAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAKAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14135</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11766</contig_pos>
        <strand>-</strand>
        <context>MKAGCTRMTA[C/T]CGCMGAKAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTA</left_flank>
        <right_flank>CGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGA</canonical>
            <polymorphic>TCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAYCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>358 306 190 146</canonical_bands>
                <polymorphic_bands>452 358 190</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAYCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14136</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11763</contig_pos>
        <strand>-</strand>
        <context>TRWMKAGCTR[A/C]TAYCGCMGAK</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTC</left_flank>
        <right_flank>TAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAA</canonical>
            <polymorphic>AAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCMTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>355 306 193 146</canonical_bands>
                <polymorphic_bands>452 355 193</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCMTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14137</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11762</contig_pos>
        <strand>-</strand>
        <context>TTRWMKAGCT[A/G]MTAYCGCMGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCT</left_flank>
        <right_flank>TTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAA</canonical>
            <polymorphic>AAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTRTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>354 306 194 146</canonical_bands>
                <polymorphic_bands>452 354 194</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTRTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14138</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11757</contig_pos>
        <strand>-</strand>
        <context>GCTRATTRWM[G/T]AGCTRMTAYC</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTT</left_flank>
        <right_flank>AGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAA</canonical>
            <polymorphic>ATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTKAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTTAAG</site>
                <isoschizomers>
                    <enzyme>AflII</enzyme>
                    <enzyme>BfrI</enzyme>
                    <enzyme>BspTI</enzyme>
                    <enzyme>Bst98I</enzyme>
                    <enzyme>MspCI</enzyme>
                    <enzyme>Vha464I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>371 225 214 80 37 31 26 16</canonical_bands>
                <polymorphic_bands>371 225 214 80 57 37 16</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>503 450 47</canonical_bands>
                <polymorphic_bands>953 47</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTKAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14139</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11756</contig_pos>
        <strand>-</strand>
        <context>MGCTRATTRW[A/C]KAGCTRMTAY</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCT</left_flank>
        <right_flank>AAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCA</canonical>
            <polymorphic>AATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTMAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTTAAG</site>
                <isoschizomers>
                    <enzyme>AflII</enzyme>
                    <enzyme>BfrI</enzyme>
                    <enzyme>BspTI</enzyme>
                    <enzyme>Bst98I</enzyme>
                    <enzyme>MspCI</enzyme>
                    <enzyme>Vha464I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>372 225 213 80 37 31 26 16</canonical_bands>
                <polymorphic_bands>372 225 213 80 57 37 16</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>502 450 48</canonical_bands>
                <polymorphic_bands>952 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTMAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14140</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11755</contig_pos>
        <strand>-</strand>
        <context>YMGCTRATTR[A/T]MKAGCTRMTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTC</left_flank>
        <right_flank>TAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTC</canonical>
            <polymorphic>AAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCWTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTTAAG</site>
                <isoschizomers>
                    <enzyme>AflII</enzyme>
                    <enzyme>BfrI</enzyme>
                    <enzyme>BspTI</enzyme>
                    <enzyme>Bst98I</enzyme>
                    <enzyme>MspCI</enzyme>
                    <enzyme>Vha464I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>373 225 212 80 37 31 26 16</canonical_bands>
                <polymorphic_bands>373 225 212 80 57 37 16</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>501 450 49</canonical_bands>
                <polymorphic_bands>951 49</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCWTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14141</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11754</contig_pos>
        <strand>-</strand>
        <context>YYMGCTRATT[A/G]WMKAGCTRMT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATT</left_flank>
        <right_flank>TTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTT</canonical>
            <polymorphic>AAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTRTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTTAAG</site>
                <isoschizomers>
                    <enzyme>AflII</enzyme>
                    <enzyme>BfrI</enzyme>
                    <enzyme>BspTI</enzyme>
                    <enzyme>Bst98I</enzyme>
                    <enzyme>MspCI</enzyme>
                    <enzyme>Vha464I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>500 450 50</canonical_bands>
                <polymorphic_bands>950 50</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTRTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14142</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11750</contig_pos>
        <strand>-</strand>
        <context>WTATYYMGCT[A/G]ATTRWMKAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCT</left_flank>
        <right_flank>ATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTT</canonical>
            <polymorphic>GCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTRATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTRATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14143</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11746</contig_pos>
        <strand>-</strand>
        <context>YCRAWTATYY[A/C]GCTRATTRWM</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGG</left_flank>
        <right_flank>GCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATAC</canonical>
            <polymorphic>AAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGMGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>149 143 98 77 71 60 59 49 42 41 39 38 36 25 18 13 12 8 6 6 6 4</canonical_bands>
                <polymorphic_bands>149 143 101 98 77 71 59 49 42 39 38 36 25 18 13 12 8 6 6 6 4</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGMGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14144</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11745</contig_pos>
        <strand>-</strand>
        <context>TYCRAWTATY[C/T]MGCTRATTRW</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATG</left_flank>
        <right_flank>TGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATA</canonical>
            <polymorphic>AAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGYTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>149 143 98 77 71 60 59 49 43 41 39 38 36 25 18 12 12 8 6 6 6 4</canonical_bands>
                <polymorphic_bands>149 143 101 98 77 71 59 49 43 39 38 36 25 18 12 12 8 6 6 6 4</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGYTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14145</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11744</contig_pos>
        <strand>-</strand>
        <context>ATYCRAWTAT[C/T]YMGCTRATTR</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTAT</left_flank>
        <right_flank>GTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTAT</canonical>
            <polymorphic>CAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATYGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATYGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14146</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11740</contig_pos>
        <strand>-</strand>
        <context>YGATATYCRA[A/T]TATYYMGCTR</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCA</left_flank>
        <right_flank>TATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATCCAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTAT</canonical>
            <polymorphic>GATCCAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCAWTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCAWTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14147</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11738</contig_pos>
        <strand>-</strand>
        <context>CTYGATATYC[A/G]AWTATYYMGC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATAC</left_flank>
        <right_flank>ATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGATCCAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGT</canonical>
            <polymorphic>CTGATCCAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACRATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACRATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14148</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11736</contig_pos>
        <strand>-</strand>
        <context>YACTYGATAT[C/T]CRAWTATYYM</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATAT</left_flank>
        <right_flank>CCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTGATCCAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAA</canonical>
            <polymorphic>ATCTGATCCAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATYCCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATYCCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14149</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11730</contig_pos>
        <strand>-</strand>
        <context>ATTTTTYACT[C/T]GATATYCRAW</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACT</left_flank>
        <right_flank>GATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCTCTATCTGATCCAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGA</canonical>
            <polymorphic>TGCTCTATCTGATCCAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTYGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>194 186 163 149 140 97 44 27</canonical_bands>
                <polymorphic_bands>303 194 186 149 97 44 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTYGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14150</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11719</contig_pos>
        <strand>-</strand>
        <context>TCCAAAKTCC[A/T]ATTTTTYACT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCC</left_flank>
        <right_flank>ATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAGGAGTTGTGCTCTATCTGATCCAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCG</canonical>
            <polymorphic>AATAGGAGTTGTGCTCTATCTGATCCAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCWATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCWATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14152</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11704</contig_pos>
        <strand>-</strand>
        <context>GAMCCCTGAA[C/T]ATGCTCCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAA</left_flank>
        <right_flank>ATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAATTTTGAGCAAAATAGGAGTTGTGCTCTATCTGATCCAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCT</canonical>
            <polymorphic>TTGAATTTTGAGCAAAATAGGAGTTGTGCTCTATCTGATCCAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAYATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAYATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14153</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11696</contig_pos>
        <strand>-</strand>
        <context>TGCTCCGKGA[A/C]CCCTGAAYAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGA</left_flank>
        <right_flank>CCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAAATGTTGAATTTTGAGCAAAATAGGAGTTGTGCTCTATCTGATCCAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGG</canonical>
            <polymorphic>CAGAAATGTTGAATTTTGAGCAAAATAGGAGTTGTGCTCTATCTGATCCAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAMCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>241 218 144 140 117 71 69</canonical_bands>
                <polymorphic_bands>381 218 144 117 71 69</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>232 218 140 79 79 71 69 65 38 9</canonical_bands>
                <polymorphic_bands>232 218 149 79 79 71 69 65 38</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>311 217 214 186 72</canonical_bands>
                <polymorphic_bands>383 217 214 186</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>180 170 104 77 75 71 69 63 40 32 32 32 31 8 8 8</canonical_bands>
                <polymorphic_bands>180 170 134 104 77 75 69 40 32 32 32 31 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAMCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14154</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11693</contig_pos>
        <strand>-</strand>
        <context>TGGTGCTCCG[G/T]GAMCCCTGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCG</left_flank>
        <right_flank>GAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCAGAAATGTTGAATTTTGAGCAAAATAGGAGTTGTGCTCTATCTGATCCAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCA</canonical>
            <polymorphic>TTTCAGAAATGTTGAATTTTGAGCAAAATAGGAGTTGTGCTCTATCTGATCCAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGKGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 425 76</canonical_bands>
                <polymorphic_bands>575 425</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGKGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14155</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11681</contig_pos>
        <strand>-</strand>
        <context>TTGGAGCATM[A/T]TTGGTGCTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATG</left_flank>
        <right_flank>TTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGGACAAAAATTTCAGAAATGTTGAATTTTGAGCAAAATAGGAGTTGTGCTCTATCTGATCCAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGT</canonical>
            <polymorphic>TCTGGACAAAAATTTCAGAAATGTTGAATTTTGAGCAAAATAGGAGTTGTGCTCTATCTGATCCAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGWTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>470 374 127 29</canonical_bands>
                <polymorphic_bands>470 403 127</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGWTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14156</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11680</contig_pos>
        <strand>-</strand>
        <context>TTTGGAGCAT[A/C]WTTGGTGCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCAT</left_flank>
        <right_flank>TTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGGACAAAAATTTCAGAAATGTTGAATTTTGAGCAAAATAGGAGTTGTGCTCTATCTGATCCAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGG</canonical>
            <polymorphic>TTCTGGACAAAAATTTCAGAAATGTTGAATTTTGAGCAAAATAGGAGTTGTGCTCTATCTGATCCAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATMTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>471 374 126 29</canonical_bands>
                <polymorphic_bands>471 403 126</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>270 225 198 149 129 29</canonical_bands>
                <polymorphic_bands>270 254 198 149 129</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATMTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14176</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>137788</contig_pos>
        <strand>+</strand>
        <context>AAAAATCGGG[C/T]ATTTTAAGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGGCTGGATGTGAGGGTTTTTAGGCTGAAAATTGGCTAAAAATCGGG</left_flank>
        <right_flank>ATTTTAAGACAAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCAATTTTGGTATACCTTAAGTCATTTTAAGCCAATTTTTAGCTATTTTAAGTCAATTTTGAGATATTTTAAGTCAATTTTGAGATATTTTAAGTCAATTTATGCTTATTTTAAGCTATTTTAAGTCAATTTTGCGTCATTTTTAGGTTATTTTGGGCTATTTTAAGTGAATTTTGGGCTATTTTATAAACTATTTCTCTCGATTTTTCCATCCCTTTCTCTCTCTCTCTCTCTCTCTATGTTCCTCTATTTTTCCTTCCAAAACTCTGCCAATTTTCAGACTGTCGACGCCGGCAAAAGTACTAAAAGTGGGCGGAGCCAACGAGTGGATTCCAGCAAGAACAATGAAGATCGAAGACACGTGGATGAAGCTTGAATTGGGATTGAATTCCATTTTCAAACATCAGGAACTGGGTGCCAGAGAGTATTTGGATTATTATAAGTGAGTTTTGGCTGGATGTGAGGGTTTTTAGGCTGAAAATTGGCTAAAAATCGGGTATTTTAAGACAAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTTTGCTCAGAATTGGTTTTTGTAGGATTTTTCGAACGGAATTGAGGTCCTGAGCTTCTAAGCTCTAATTTGATTTCCGTCTTGACCTACCTAGCTTATTTTTAAGATTTGGAGCATTTTGGAGCGAAAATAGCATAGGTCCTATTTGGCTCAAATTTTGAAGTTTTTGGAAATTTTGTCCGGATTCGTAATTCTGAGCTCATAAGCTTTCATTTGGTACCCATATTGCTATATCTAGCTCACTTTCGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACAAAGCCTATTTTGCTCAAAATCGAAATTTTTTGAAAATTTTGAACCGGTCTTGAGGTCCAGAGCTCTT</canonical>
            <polymorphic>GTTCAATTTTGGTATACCTTAAGTCATTTTAAGCCAATTTTTAGCTATTTTAAGTCAATTTTGAGATATTTTAAGTCAATTTTGAGATATTTTAAGTCAATTTATGCTTATTTTAAGCTATTTTAAGTCAATTTTGCGTCATTTTTAGGTTATTTTGGGCTATTTTAAGTGAATTTTGGGCTATTTTATAAACTATTTCTCTCGATTTTTCCATCCCTTTCTCTCTCTCTCTCTCTCTCTATGTTCCTCTATTTTTCCTTCCAAAACTCTGCCAATTTTCAGACTGTCGACGCCGGCAAAAGTACTAAAAGTGGGCGGAGCCAACGAGTGGATTCCAGCAAGAACAATGAAGATCGAAGACACGTGGATGAAGCTTGAATTGGGATTGAATTCCATTTTCAAACATCAGGAACTGGGTGCCAGAGAGTATTTGGATTATTATAAGTGAGTTTTGGCTGGATGTGAGGGTTTTTAGGCTGAAAATTGGCTAAAAATCGGGYATTTTAAGACAAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTTTGCTCAGAATTGGTTTTTGTAGGATTTTTCGAACGGAATTGAGGTCCTGAGCTTCTAAGCTCTAATTTGATTTCCGTCTTGACCTACCTAGCTTATTTTTAAGATTTGGAGCATTTTGGAGCGAAAATAGCATAGGTCCTATTTGGCTCAAATTTTGAAGTTTTTGGAAATTTTGTCCGGATTCGTAATTCTGAGCTCATAAGCTTTCATTTGGTACCCATATTGCTATATCTAGCTCACTTTCGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACAAAGCCTATTTTGCTCAAAATCGAAATTTTTTGAAAATTTTGAACCGGTCTTGAGGTCCAGAGCTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGCCAGAGAGTATTTGGATTA</pcr_primer_p1>
		<pcr_primer_p2>CGTTCGAAAAATCCTACAAA</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>GTGCCAGAGAGTATTTGGATTATTATAAGTGAGTTTTGGCTGGATGTGAGGGTTTTTAGGCTGAAAATTGGCTAAAAATCGGGTATTTTAAGACAAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTTTGCTCAGAATTGGTTTTTGTAGGATTTTTCGAACG</canonical_amplicon>
		<polymorphic_amplicon>GTGCCAGAGAGTATTTGGATTATTATAAGTGAGTTTTGGCTGGATGTGAGGGTTTTTAGGCTGAAAATTGGCTAAAAATCGGGYATTTTAAGACAAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTTTGCTCAGAATTGGTTTTTGTAGGATTTTTCGAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14177</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>137944</contig_pos>
        <strand>+</strand>
        <context>agcccTAGTT[G/T]GCTCARAAWT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTGTGCATTTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTT</left_flank>
        <right_flank>GCTCAGAATTGGTTTTTGTAGGATTTTTCGAACGGAATTGAGGTCCTGAG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGCTATTTTAAGTGAATTTTGGGCTATTTTATAAACTATTTCTCTCGATTTTTCCATCCCTTTCTCTCTCTCTCTCTCTCTCTATGTTCCTCTATTTTTCCTTCCAAAACTCTGCCAATTTTCAGACTGTCGACGCCGGCAAAAGTACTAAAAGTGGGCGGAGCCAACGAGTGGATTCCAGCAAGAACAATGAAGATCGAAGACACGTGGATGAAGCTTGAATTGGGATTGAATTCCATTTTCAAACATCAGGAACTGGGTGCCAGAGAGTATTTGGATTATTATAAGTGAGTTTTGGCTGGATGTGAGGGTTTTTAGGCTGAAAATTGGCTAAAAATCGGGTATTTTAAGACAAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTTTGCTCAGAATTGGTTTTTGTAGGATTTTTCGAACGGAATTGAGGTCCTGAGCTTCTAAGCTCTAATTTGATTTCCGTCTTGACCTACCTAGCTTATTTTTAAGATTTGGAGCATTTTGGAGCGAAAATAGCATAGGTCCTATTTGGCTCAAATTTTGAAGTTTTTGGAAATTTTGTCCGGATTCGTAATTCTGAGCTCATAAGCTTTCATTTGGTACCCATATTGCTATATCTAGCTCACTTTCGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACAAAGCCTATTTTGCTCAAAATCGAAATTTTTTGAAAATTTTGAACCGGTCTTGAGGTCCAGAGCTCTTAAGCTTTTATTTGGTACTCATATTGCTGCATCTAGCTCATTTTTGAAATTTGGAGCATTTTCTAGCAAAAAGAGCACAAAGCCTATTTTGCTCAAAATCGAAGTTTTTTGAAAATTTTGGACCGGTCTTGAGGTCCAGAGCTCATAAGCTTTCATT</canonical>
            <polymorphic>GGGCTATTTTAAGTGAATTTTGGGCTATTTTATAAACTATTTCTCTCGATTTTTCCATCCCTTTCTCTCTCTCTCTCTCTCTCTATGTTCCTCTATTTTTCCTTCCAAAACTCTGCCAATTTTCAGACTGTCGACGCCGGCAAAAGTACTAAAAGTGGGCGGAGCCAACGAGTGGATTCCAGCAAGAACAATGAAGATCGAAGACACGTGGATGAAGCTTGAATTGGGATTGAATTCCATTTTCAAACATCAGGAACTGGGTGCCAGAGAGTATTTGGATTATTATAAGTGAGTTTTGGCTGGATGTGAGGGTTTTTAGGCTGAAAATTGGCTAAAAATCGGGTATTTTAAGACAAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTTKGCTCAGAATTGGTTTTTGTAGGATTTTTCGAACGGAATTGAGGTCCTGAGCTTCTAAGCTCTAATTTGATTTCCGTCTTGACCTACCTAGCTTATTTTTAAGATTTGGAGCATTTTGGAGCGAAAATAGCATAGGTCCTATTTGGCTCAAATTTTGAAGTTTTTGGAAATTTTGTCCGGATTCGTAATTCTGAGCTCATAAGCTTTCATTTGGTACCCATATTGCTATATCTAGCTCACTTTCGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACAAAGCCTATTTTGCTCAAAATCGAAATTTTTTGAAAATTTTGAACCGGTCTTGAGGTCCAGAGCTCTTAAGCTTTTATTTGGTACTCATATTGCTGCATCTAGCTCATTTTTGAAATTTGGAGCATTTTCTAGCAAAAAGAGCACAAAGCCTATTTTGCTCAAAATCGAAGTTTTTTGAAAATTTTGGACCGGTCTTGAGGTCCAGAGCTCATAAGCTTTCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGACAAAAATCAGCTCAGAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATAAGCTAGGTAGGTCAAGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAAGACAAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTTTGCTCAGAATTGGTTTTTGTAGGATTTTTCGAACGGAATTGAGGTCCTGAGCTTCTAAGCTCTAATTTGATTTCCGTCTTGACCTACCTAGCTTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TAAGACAAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTTKGCTCAGAATTGGTTTTTGTAGGATTTTTCGAACGGAATTGAGGTCCTGAGCTTCTAAGCTCTAATTTGATTTCCGTCTTGACCTACCTAGCTTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14178</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>137950</contig_pos>
        <strand>+</strand>
        <context>AGTTKGCTCA[A/G]AAWTGGTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTTTGCTCA</left_flank>
        <right_flank>AATTGGTTTTTGTAGGATTTTTCGAACGGAATTGAGGTCCTGAGCTTCTA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTAAGTGAATTTTGGGCTATTTTATAAACTATTTCTCTCGATTTTTCCATCCCTTTCTCTCTCTCTCTCTCTCTCTATGTTCCTCTATTTTTCCTTCCAAAACTCTGCCAATTTTCAGACTGTCGACGCCGGCAAAAGTACTAAAAGTGGGCGGAGCCAACGAGTGGATTCCAGCAAGAACAATGAAGATCGAAGACACGTGGATGAAGCTTGAATTGGGATTGAATTCCATTTTCAAACATCAGGAACTGGGTGCCAGAGAGTATTTGGATTATTATAAGTGAGTTTTGGCTGGATGTGAGGGTTTTTAGGCTGAAAATTGGCTAAAAATCGGGTATTTTAAGACAAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTTTGCTCAGAATTGGTTTTTGTAGGATTTTTCGAACGGAATTGAGGTCCTGAGCTTCTAAGCTCTAATTTGATTTCCGTCTTGACCTACCTAGCTTATTTTTAAGATTTGGAGCATTTTGGAGCGAAAATAGCATAGGTCCTATTTGGCTCAAATTTTGAAGTTTTTGGAAATTTTGTCCGGATTCGTAATTCTGAGCTCATAAGCTTTCATTTGGTACCCATATTGCTATATCTAGCTCACTTTCGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACAAAGCCTATTTTGCTCAAAATCGAAATTTTTTGAAAATTTTGAACCGGTCTTGAGGTCCAGAGCTCTTAAGCTTTTATTTGGTACTCATATTGCTGCATCTAGCTCATTTTTGAAATTTGGAGCATTTTCTAGCAAAAAGAGCACAAAGCCTATTTTGCTCAAAATCGAAGTTTTTTGAAAATTTTGGACCGGTCTTGAGGTCCAGAGCTCATAAGCTTTCATTTGGTAC</canonical>
            <polymorphic>TTTTAAGTGAATTTTGGGCTATTTTATAAACTATTTCTCTCGATTTTTCCATCCCTTTCTCTCTCTCTCTCTCTCTCTATGTTCCTCTATTTTTCCTTCCAAAACTCTGCCAATTTTCAGACTGTCGACGCCGGCAAAAGTACTAAAAGTGGGCGGAGCCAACGAGTGGATTCCAGCAAGAACAATGAAGATCGAAGACACGTGGATGAAGCTTGAATTGGGATTGAATTCCATTTTCAAACATCAGGAACTGGGTGCCAGAGAGTATTTGGATTATTATAAGTGAGTTTTGGCTGGATGTGAGGGTTTTTAGGCTGAAAATTGGCTAAAAATCGGGTATTTTAAGACAAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTTTGCTCARAATTGGTTTTTGTAGGATTTTTCGAACGGAATTGAGGTCCTGAGCTTCTAAGCTCTAATTTGATTTCCGTCTTGACCTACCTAGCTTATTTTTAAGATTTGGAGCATTTTGGAGCGAAAATAGCATAGGTCCTATTTGGCTCAAATTTTGAAGTTTTTGGAAATTTTGTCCGGATTCGTAATTCTGAGCTCATAAGCTTTCATTTGGTACCCATATTGCTATATCTAGCTCACTTTCGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACAAAGCCTATTTTGCTCAAAATCGAAATTTTTTGAAAATTTTGAACCGGTCTTGAGGTCCAGAGCTCTTAAGCTTTTATTTGGTACTCATATTGCTGCATCTAGCTCATTTTTGAAATTTGGAGCATTTTCTAGCAAAAAGAGCACAAAGCCTATTTTGCTCAAAATCGAAGTTTTTTGAAAATTTTGGACCGGTCTTGAGGTCCAGAGCTCATAAGCTTTCATTTGGTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>358 316 138 136 44 8</canonical_bands>
                <polymorphic_bands>358 316 182 136 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>315 242 186 138 119</canonical_bands>
                <polymorphic_bands>324 315 242 119</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAGACAAAAATCAGCTCAGAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATAAGCTAGGTAGGTCAAGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAAGACAAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTTTGCTCAGAATTGGTTTTTGTAGGATTTTTCGAACGGAATTGAGGTCCTGAGCTTCTAAGCTCTAATTTGATTTCCGTCTTGACCTACCTAGCTTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TAAGACAAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTTTGCTCARAATTGGTTTTTGTAGGATTTTTCGAACGGAATTGAGGTCCTGAGCTTCTAAGCTCTAATTTGATTTCCGTCTTGACCTACCTAGCTTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14179</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>137953</contig_pos>
        <strand>+</strand>
        <context>TKGCTCARAA[A/T]TGGTTTTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTTTGCTCAGAA</left_flank>
        <right_flank>TGGTTTTTGTAGGATTTTTCGAACGGAATTGAGGTCCTGAGCTTCTAAGC</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAGTGAATTTTGGGCTATTTTATAAACTATTTCTCTCGATTTTTCCATCCCTTTCTCTCTCTCTCTCTCTCTCTATGTTCCTCTATTTTTCCTTCCAAAACTCTGCCAATTTTCAGACTGTCGACGCCGGCAAAAGTACTAAAAGTGGGCGGAGCCAACGAGTGGATTCCAGCAAGAACAATGAAGATCGAAGACACGTGGATGAAGCTTGAATTGGGATTGAATTCCATTTTCAAACATCAGGAACTGGGTGCCAGAGAGTATTTGGATTATTATAAGTGAGTTTTGGCTGGATGTGAGGGTTTTTAGGCTGAAAATTGGCTAAAAATCGGGTATTTTAAGACAAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTTTGCTCAGAATTGGTTTTTGTAGGATTTTTCGAACGGAATTGAGGTCCTGAGCTTCTAAGCTCTAATTTGATTTCCGTCTTGACCTACCTAGCTTATTTTTAAGATTTGGAGCATTTTGGAGCGAAAATAGCATAGGTCCTATTTGGCTCAAATTTTGAAGTTTTTGGAAATTTTGTCCGGATTCGTAATTCTGAGCTCATAAGCTTTCATTTGGTACCCATATTGCTATATCTAGCTCACTTTCGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACAAAGCCTATTTTGCTCAAAATCGAAATTTTTTGAAAATTTTGAACCGGTCTTGAGGTCCAGAGCTCTTAAGCTTTTATTTGGTACTCATATTGCTGCATCTAGCTCATTTTTGAAATTTGGAGCATTTTCTAGCAAAAAGAGCACAAAGCCTATTTTGCTCAAAATCGAAGTTTTTTGAAAATTTTGGACCGGTCTTGAGGTCCAGAGCTCATAAGCTTTCATTTGGTACCCA</canonical>
            <polymorphic>TAAGTGAATTTTGGGCTATTTTATAAACTATTTCTCTCGATTTTTCCATCCCTTTCTCTCTCTCTCTCTCTCTCTATGTTCCTCTATTTTTCCTTCCAAAACTCTGCCAATTTTCAGACTGTCGACGCCGGCAAAAGTACTAAAAGTGGGCGGAGCCAACGAGTGGATTCCAGCAAGAACAATGAAGATCGAAGACACGTGGATGAAGCTTGAATTGGGATTGAATTCCATTTTCAAACATCAGGAACTGGGTGCCAGAGAGTATTTGGATTATTATAAGTGAGTTTTGGCTGGATGTGAGGGTTTTTAGGCTGAAAATTGGCTAAAAATCGGGTATTTTAAGACAAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTTTGCTCAGAAWTGGTTTTTGTAGGATTTTTCGAACGGAATTGAGGTCCTGAGCTTCTAAGCTCTAATTTGATTTCCGTCTTGACCTACCTAGCTTATTTTTAAGATTTGGAGCATTTTGGAGCGAAAATAGCATAGGTCCTATTTGGCTCAAATTTTGAAGTTTTTGGAAATTTTGTCCGGATTCGTAATTCTGAGCTCATAAGCTTTCATTTGGTACCCATATTGCTATATCTAGCTCACTTTCGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACAAAGCCTATTTTGCTCAAAATCGAAATTTTTTGAAAATTTTGAACCGGTCTTGAGGTCCAGAGCTCTTAAGCTTTTATTTGGTACTCATATTGCTGCATCTAGCTCATTTTTGAAATTTGGAGCATTTTCTAGCAAAAAGAGCACAAAGCCTATTTTGCTCAAAATCGAAGTTTTTTGAAAATTTTGGACCGGTCTTGAGGTCCAGAGCTCATAAGCTTTCATTTGGTACCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>104 102 93 87 86 79 66 60 55 53 51 44 29 27 18 18 11 11 6</canonical_bands>
                <polymorphic_bands>104 102 93 87 86 79 73 66 60 55 53 51 27 18 18 11 11 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAGACAAAAATCAGCTCAGAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATAAGCTAGGTAGGTCAAGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAAGACAAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTTTGCTCAGAATTGGTTTTTGTAGGATTTTTCGAACGGAATTGAGGTCCTGAGCTTCTAAGCTCTAATTTGATTTCCGTCTTGACCTACCTAGCTTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TAAGACAAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTTTGCTCAGAAWTGGTTTTTGTAGGATTTTTCGAACGGAATTGAGGTCCTGAGCTTCTAAGCTCTAATTTGATTTCCGTCTTGACCTACCTAGCTTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14180</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>137992</contig_pos>
        <strand>+</strand>
        <context>TTGAGGTCCT[A/G]AGCTTCYAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGCTCAGAATTGGTTTTTGTAGGATTTTTCGAACGGAATTGAGGTCCT</left_flank>
        <right_flank>AGCTTCTAAGCTCTAATTTGATTTCCGTCTTGACCTACCTAGCTTATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTCCATCCCTTTCTCTCTCTCTCTCTCTCTCTATGTTCCTCTATTTTTCCTTCCAAAACTCTGCCAATTTTCAGACTGTCGACGCCGGCAAAAGTACTAAAAGTGGGCGGAGCCAACGAGTGGATTCCAGCAAGAACAATGAAGATCGAAGACACGTGGATGAAGCTTGAATTGGGATTGAATTCCATTTTCAAACATCAGGAACTGGGTGCCAGAGAGTATTTGGATTATTATAAGTGAGTTTTGGCTGGATGTGAGGGTTTTTAGGCTGAAAATTGGCTAAAAATCGGGTATTTTAAGACAAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTTTGCTCAGAATTGGTTTTTGTAGGATTTTTCGAACGGAATTGAGGTCCTGAGCTTCTAAGCTCTAATTTGATTTCCGTCTTGACCTACCTAGCTTATTTTTAAGATTTGGAGCATTTTGGAGCGAAAATAGCATAGGTCCTATTTGGCTCAAATTTTGAAGTTTTTGGAAATTTTGTCCGGATTCGTAATTCTGAGCTCATAAGCTTTCATTTGGTACCCATATTGCTATATCTAGCTCACTTTCGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACAAAGCCTATTTTGCTCAAAATCGAAATTTTTTGAAAATTTTGAACCGGTCTTGAGGTCCAGAGCTCTTAAGCTTTTATTTGGTACTCATATTGCTGCATCTAGCTCATTTTTGAAATTTGGAGCATTTTCTAGCAAAAAGAGCACAAAGCCTATTTTGCTCAAAATCGAAGTTTTTTGAAAATTTTGGACCGGTCTTGAGGTCCAGAGCTCATAAGCTTTCATTTGGTACCCATATTGCTATATCTAGCTCATTTTCGAAATTTGGAGCATT</canonical>
            <polymorphic>ATTTTTCCATCCCTTTCTCTCTCTCTCTCTCTCTCTATGTTCCTCTATTTTTCCTTCCAAAACTCTGCCAATTTTCAGACTGTCGACGCCGGCAAAAGTACTAAAAGTGGGCGGAGCCAACGAGTGGATTCCAGCAAGAACAATGAAGATCGAAGACACGTGGATGAAGCTTGAATTGGGATTGAATTCCATTTTCAAACATCAGGAACTGGGTGCCAGAGAGTATTTGGATTATTATAAGTGAGTTTTGGCTGGATGTGAGGGTTTTTAGGCTGAAAATTGGCTAAAAATCGGGTATTTTAAGACAAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTTTGCTCAGAATTGGTTTTTGTAGGATTTTTCGAACGGAATTGAGGTCCTRAGCTTCTAAGCTCTAATTTGATTTCCGTCTTGACCTACCTAGCTTATTTTTAAGATTTGGAGCATTTTGGAGCGAAAATAGCATAGGTCCTATTTGGCTCAAATTTTGAAGTTTTTGGAAATTTTGTCCGGATTCGTAATTCTGAGCTCATAAGCTTTCATTTGGTACCCATATTGCTATATCTAGCTCACTTTCGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACAAAGCCTATTTTGCTCAAAATCGAAATTTTTTGAAAATTTTGAACCGGTCTTGAGGTCCAGAGCTCTTAAGCTTTTATTTGGTACTCATATTGCTGCATCTAGCTCATTTTTGAAATTTGGAGCATTTTCTAGCAAAAAGAGCACAAAGCCTATTTTGCTCAAAATCGAAGTTTTTTGAAAATTTTGGACCGGTCTTGAGGTCCAGAGCTCATAAGCTTTCATTTGGTACCCATATTGCTATATCTAGCTCATTTTCGAAATTTGGAGCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>294 203 150 137 99 69 32 8 8</canonical_bands>
                <polymorphic_bands>326 203 150 137 99 69 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCAGCTCAGAAATCATAG</pcr_primer_p1>
		<pcr_primer_p2>TCCAAATCTTAAAAATAAGCTAGG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTTTGCTCAGAATTGGTTTTTGTAGGATTTTTCGAACGGAATTGAGGTCCTGAGCTTCTAAGCTCTAATTTGATTTCCGTCTTGACCTACCTAGCTTATTTTTAAGATTTGGA</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTTTGCTCAGAATTGGTTTTTGTAGGATTTTTCGAACGGAATTGAGGTCCTRAGCTTCTAAGCTCTAATTTGATTTCCGTCTTGACCTACCTAGCTTATTTTTAAGATTTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14181</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>140257</contig_pos>
        <strand>+</strand>
        <context>CTAAAACGGS[A/T]CAAAAGCGGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTCTGAAATTAATGAAAATCGACTTTGGACCATTTTGGGCTAAAACGGG</left_flank>
        <right_flank>CAAAAGCGGCCCAAAAAAGGGTCAAAAATCATCTAAAATATATTTTGAGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAATTGTGCCTCCGAGTGGAAAAAGGGCTCGAAGCTCTTCGTCAAGCCCTCCAGGACTACGTCACCAAGGTCGGAAGAGAGGCTCTGGAGCAGAGATGTCAAGAAGCGCTTCAAGACCCCAAAATCTATGTACACACGATTCTTGAGGTCCACCAGAGGTATCAAGGACTCGTCGAGAGGTCATTCTCCAAAGAAGTTGGATTTGTGAAGTCGTTGGACACTGCCGCTATCGCCTTCATCAATAGAAATGCAGTGACCGAGAAGGCTCCAGAAACTCGAGTGCTCAAATCGCCGGAGCTCATTGCGAGATACTGTGACTTGTTGATGAAGAAGAACTCGAAGATGCCCGATGAGATGGAGATGGATGTGTTGCAGAAGAATGTGGTGAGTTTTTGGGGGATTTTTTAACCAAGAAAATGGCTCAGAACGGCTAAAAAGGCTTCAAAATAGTCTGAAATTAATGAAAATCGACTTTGGACCATTTTGGGCTAAAACGGGACAAAAGCGGCCCAAAAAAGGGTCAAAAATCATCTAAAATATATTTTGAGTGCCTCTGACCAATTTAAACCATTTTGAACCAATTTTTAGGCGTACTGGGGCAAGTTTGTACGCTAGAAACAATTTTTGACTACTTTGGGACCTATTAGTACTAATTTGGACCGAAAACGCTCTAAATAGTTGTTGTCTGACCAATTTAGACCATTTTAAGCCATTTTTTAGGTATTTTGGAGCAAATTTCAACGTCATTAAAGGCTTTTTGACCATTTCAAAGCTATTTTCTTTGGATTCTGACCCTTTTGACCCTAATTGTGATCAATTCGGGCAGAAATGGCTCAAAAACATTCAAATATGATTTCAAAGCGTTTCTGACCGATTCGGATCATTTTGGGCCGTTTTCTGGCCGCTTGGTTGAGTTTGGGCTCTTTTTTACACTGATTTCAAACCAAAAACGACTGAAATTGGCTTCAAAATGATTCGAAATCAACAATTATGAAATTT</canonical>
            <polymorphic>CCAATTGTGCCTCCGAGTGGAAAAAGGGCTCGAAGCTCTTCGTCAAGCCCTCCAGGACTACGTCACCAAGGTCGGAAGAGAGGCTCTGGAGCAGAGATGTCAAGAAGCGCTTCAAGACCCCAAAATCTATGTACACACGATTCTTGAGGTCCACCAGAGGTATCAAGGACTCGTCGAGAGGTCATTCTCCAAAGAAGTTGGATTTGTGAAGTCGTTGGACACTGCCGCTATCGCCTTCATCAATAGAAATGCAGTGACCGAGAAGGCTCCAGAAACTCGAGTGCTCAAATCGCCGGAGCTCATTGCGAGATACTGTGACTTGTTGATGAAGAAGAACTCGAAGATGCCCGATGAGATGGAGATGGATGTGTTGCAGAAGAATGTGGTGAGTTTTTGGGGGATTTTTTAACCAAGAAAATGGCTCAGAACGGCTAAAAAGGCTTCAAAATAGTCTGAAATTAATGAAAATCGACTTTGGACCATTTTGGGCTAAAACGGGWCAAAAGCGGCCCAAAAAAGGGTCAAAAATCATCTAAAATATATTTTGAGTGCCTCTGACCAATTTAAACCATTTTGAACCAATTTTTAGGCGTACTGGGGCAAGTTTGTACGCTAGAAACAATTTTTGACTACTTTGGGACCTATTAGTACTAATTTGGACCGAAAACGCTCTAAATAGTTGTTGTCTGACCAATTTAGACCATTTTAAGCCATTTTTTAGGTATTTTGGAGCAAATTTCAACGTCATTAAAGGCTTTTTGACCATTTCAAAGCTATTTTCTTTGGATTCTGACCCTTTTGACCCTAATTGTGATCAATTCGGGCAGAAATGGCTCAAAAACATTCAAATATGATTTCAAAGCGTTTCTGACCGATTCGGATCATTTTGGGCCGTTTTCTGGCCGCTTGGTTGAGTTTGGGCTCTTTTTTACACTGATTTCAAACCAAAAACGACTGAAATTGGCTTCAAAATGATTCGAAATCAACAATTATGAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACCAAGAAAATGGCTCAG</pcr_primer_p1>
		<pcr_primer_p2>GAAATCATATTTGAATGTTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>452</pcr_amplicon_size>
		<canonical_amplicon>TAACCAAGAAAATGGCTCAGAACGGCTAAAAAGGCTTCAAAATAGTCTGAAATTAATGAAAATCGACTTTGGACCATTTTGGGCTAAAACGGGACAAAAGCGGCCCAAAAAAGGGTCAAAAATCATCTAAAATATATTTTGAGTGCCTCTGACCAATTTAAACCATTTTGAACCAATTTTTAGGCGTACTGGGGCAAGTTTGTACGCTAGAAACAATTTTTGACTACTTTGGGACCTATTAGTACTAATTTGGACCGAAAACGCTCTAAATAGTTGTTGTCTGACCAATTTAGACCATTTTAAGCCATTTTTTAGGTATTTTGGAGCAAATTTCAACGTCATTAAAGGCTTTTTGACCATTTCAAAGCTATTTTCTTTGGATTCTGACCCTTTTGACCCTAATTGTGATCAATTCGGGCAGAAATGGCTCAAAAACATTCAAATATGATTTC</canonical_amplicon>
		<polymorphic_amplicon>TAACCAAGAAAATGGCTCAGAACGGCTAAAAAGGCTTCAAAATAGTCTGAAATTAATGAAAATCGACTTTGGACCATTTTGGGCTAAAACGGGWCAAAAGCGGCCCAAAAAAGGGTCAAAAATCATCTAAAATATATTTTGAGTGCCTCTGACCAATTTAAACCATTTTGAACCAATTTTTAGGCGTACTGGGGCAAGTTTGTACGCTAGAAACAATTTTTGACTACTTTGGGACCTATTAGTACTAATTTGGACCGAAAACGCTCTAAATAGTTGTTGTCTGACCAATTTAGACCATTTTAAGCCATTTTTTAGGTATTTTGGAGCAAATTTCAACGTCATTAAAGGCTTTTTGACCATTTCAAAGCTATTTTCTTTGGATTCTGACCCTTTTGACCCTAATTGTGATCAATTCGGGCAGAAATGGCTCAAAAACATTCAAATATGATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14182</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>140256</contig_pos>
        <strand>+</strand>
        <context>GCTAAAACGG[C/G]WCAAAAGCGG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAGTCTGAAATTAATGAAAATCGACTTTGGACCATTTTGGGCTAAAACGG</left_flank>
        <right_flank>ACAAAAGCGGCCCAAAAAAGGGTCAAAAATCATCTAAAATATATTTTGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAATTGTGCCTCCGAGTGGAAAAAGGGCTCGAAGCTCTTCGTCAAGCCCTCCAGGACTACGTCACCAAGGTCGGAAGAGAGGCTCTGGAGCAGAGATGTCAAGAAGCGCTTCAAGACCCCAAAATCTATGTACACACGATTCTTGAGGTCCACCAGAGGTATCAAGGACTCGTCGAGAGGTCATTCTCCAAAGAAGTTGGATTTGTGAAGTCGTTGGACACTGCCGCTATCGCCTTCATCAATAGAAATGCAGTGACCGAGAAGGCTCCAGAAACTCGAGTGCTCAAATCGCCGGAGCTCATTGCGAGATACTGTGACTTGTTGATGAAGAAGAACTCGAAGATGCCCGATGAGATGGAGATGGATGTGTTGCAGAAGAATGTGGTGAGTTTTTGGGGGATTTTTTAACCAAGAAAATGGCTCAGAACGGCTAAAAAGGCTTCAAAATAGTCTGAAATTAATGAAAATCGACTTTGGACCATTTTGGGCTAAAACGGGACAAAAGCGGCCCAAAAAAGGGTCAAAAATCATCTAAAATATATTTTGAGTGCCTCTGACCAATTTAAACCATTTTGAACCAATTTTTAGGCGTACTGGGGCAAGTTTGTACGCTAGAAACAATTTTTGACTACTTTGGGACCTATTAGTACTAATTTGGACCGAAAACGCTCTAAATAGTTGTTGTCTGACCAATTTAGACCATTTTAAGCCATTTTTTAGGTATTTTGGAGCAAATTTCAACGTCATTAAAGGCTTTTTGACCATTTCAAAGCTATTTTCTTTGGATTCTGACCCTTTTGACCCTAATTGTGATCAATTCGGGCAGAAATGGCTCAAAAACATTCAAATATGATTTCAAAGCGTTTCTGACCGATTCGGATCATTTTGGGCCGTTTTCTGGCCGCTTGGTTGAGTTTGGGCTCTTTTTTACACTGATTTCAAACCAAAAACGACTGAAATTGGCTTCAAAATGATTCGAAATCAACAATTATGAAATT</canonical>
            <polymorphic>ACCAATTGTGCCTCCGAGTGGAAAAAGGGCTCGAAGCTCTTCGTCAAGCCCTCCAGGACTACGTCACCAAGGTCGGAAGAGAGGCTCTGGAGCAGAGATGTCAAGAAGCGCTTCAAGACCCCAAAATCTATGTACACACGATTCTTGAGGTCCACCAGAGGTATCAAGGACTCGTCGAGAGGTCATTCTCCAAAGAAGTTGGATTTGTGAAGTCGTTGGACACTGCCGCTATCGCCTTCATCAATAGAAATGCAGTGACCGAGAAGGCTCCAGAAACTCGAGTGCTCAAATCGCCGGAGCTCATTGCGAGATACTGTGACTTGTTGATGAAGAAGAACTCGAAGATGCCCGATGAGATGGAGATGGATGTGTTGCAGAAGAATGTGGTGAGTTTTTGGGGGATTTTTTAACCAAGAAAATGGCTCAGAACGGCTAAAAAGGCTTCAAAATAGTCTGAAATTAATGAAAATCGACTTTGGACCATTTTGGGCTAAAACGGSACAAAAGCGGCCCAAAAAAGGGTCAAAAATCATCTAAAATATATTTTGAGTGCCTCTGACCAATTTAAACCATTTTGAACCAATTTTTAGGCGTACTGGGGCAAGTTTGTACGCTAGAAACAATTTTTGACTACTTTGGGACCTATTAGTACTAATTTGGACCGAAAACGCTCTAAATAGTTGTTGTCTGACCAATTTAGACCATTTTAAGCCATTTTTTAGGTATTTTGGAGCAAATTTCAACGTCATTAAAGGCTTTTTGACCATTTCAAAGCTATTTTCTTTGGATTCTGACCCTTTTGACCCTAATTGTGATCAATTCGGGCAGAAATGGCTCAAAAACATTCAAATATGATTTCAAAGCGTTTCTGACCGATTCGGATCATTTTGGGCCGTTTTCTGGCCGCTTGGTTGAGTTTGGGCTCTTTTTTACACTGATTTCAAACCAAAAACGACTGAAATTGGCTTCAAAATGATTCGAAATCAACAATTATGAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACCAAGAAAATGGCTCAG</pcr_primer_p1>
		<pcr_primer_p2>GAAATCATATTTGAATGTTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>452</pcr_amplicon_size>
		<canonical_amplicon>TAACCAAGAAAATGGCTCAGAACGGCTAAAAAGGCTTCAAAATAGTCTGAAATTAATGAAAATCGACTTTGGACCATTTTGGGCTAAAACGGGACAAAAGCGGCCCAAAAAAGGGTCAAAAATCATCTAAAATATATTTTGAGTGCCTCTGACCAATTTAAACCATTTTGAACCAATTTTTAGGCGTACTGGGGCAAGTTTGTACGCTAGAAACAATTTTTGACTACTTTGGGACCTATTAGTACTAATTTGGACCGAAAACGCTCTAAATAGTTGTTGTCTGACCAATTTAGACCATTTTAAGCCATTTTTTAGGTATTTTGGAGCAAATTTCAACGTCATTAAAGGCTTTTTGACCATTTCAAAGCTATTTTCTTTGGATTCTGACCCTTTTGACCCTAATTGTGATCAATTCGGGCAGAAATGGCTCAAAAACATTCAAATATGATTTC</canonical_amplicon>
		<polymorphic_amplicon>TAACCAAGAAAATGGCTCAGAACGGCTAAAAAGGCTTCAAAATAGTCTGAAATTAATGAAAATCGACTTTGGACCATTTTGGGCTAAAACGGSACAAAAGCGGCCCAAAAAAGGGTCAAAAATCATCTAAAATATATTTTGAGTGCCTCTGACCAATTTAAACCATTTTGAACCAATTTTTAGGCGTACTGGGGCAAGTTTGTACGCTAGAAACAATTTTTGACTACTTTGGGACCTATTAGTACTAATTTGGACCGAAAACGCTCTAAATAGTTGTTGTCTGACCAATTTAGACCATTTTAAGCCATTTTTTAGGTATTTTGGAGCAAATTTCAACGTCATTAAAGGCTTTTTGACCATTTCAAAGCTATTTTCTTTGGATTCTGACCCTTTTGACCCTAATTGTGATCAATTCGGGCAGAAATGGCTCAAAAACATTCAAATATGATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14183</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>140200</contig_pos>
        <strand>+</strand>
        <context>TAAAAAGGCT[C/T]CAAAATAGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGGGGGATTTTTTAACCAAGAAAATGGCTCAGAACGGCTAAAAAGGCT</left_flank>
        <right_flank>CAAAATAGTCTGAAATTAATGAAAATCGACTTTGGACCATTTTGGGCTAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCCACTTTGGAACTTTGCTAGTCGAGCAAGCAGACGATGATATCGGAAGAATGTACCAATTGTGCCTCCGAGTGGAAAAAGGGCTCGAAGCTCTTCGTCAAGCCCTCCAGGACTACGTCACCAAGGTCGGAAGAGAGGCTCTGGAGCAGAGATGTCAAGAAGCGCTTCAAGACCCCAAAATCTATGTACACACGATTCTTGAGGTCCACCAGAGGTATCAAGGACTCGTCGAGAGGTCATTCTCCAAAGAAGTTGGATTTGTGAAGTCGTTGGACACTGCCGCTATCGCCTTCATCAATAGAAATGCAGTGACCGAGAAGGCTCCAGAAACTCGAGTGCTCAAATCGCCGGAGCTCATTGCGAGATACTGTGACTTGTTGATGAAGAAGAACTCGAAGATGCCCGATGAGATGGAGATGGATGTGTTGCAGAAGAATGTGGTGAGTTTTTGGGGGATTTTTTAACCAAGAAAATGGCTCAGAACGGCTAAAAAGGCTTCAAAATAGTCTGAAATTAATGAAAATCGACTTTGGACCATTTTGGGCTAAAACGGGACAAAAGCGGCCCAAAAAAGGGTCAAAAATCATCTAAAATATATTTTGAGTGCCTCTGACCAATTTAAACCATTTTGAACCAATTTTTAGGCGTACTGGGGCAAGTTTGTACGCTAGAAACAATTTTTGACTACTTTGGGACCTATTAGTACTAATTTGGACCGAAAACGCTCTAAATAGTTGTTGTCTGACCAATTTAGACCATTTTAAGCCATTTTTTAGGTATTTTGGAGCAAATTTCAACGTCATTAAAGGCTTTTTGACCATTTCAAAGCTATTTTCTTTGGATTCTGACCCTTTTGACCCTAATTGTGATCAATTCGGGCAGAAATGGCTCAAAAACATTCAAATATGATTTCAAAGCGTTTCTGACCGATTCGGATCATTTTGGGCCGTTTTCTGGCCGCTTGGTTGAGTTTGGGCTCTTTTTTACACTGATTTCAA</canonical>
            <polymorphic>AAGCCACTTTGGAACTTTGCTAGTCGAGCAAGCAGACGATGATATCGGAAGAATGTACCAATTGTGCCTCCGAGTGGAAAAAGGGCTCGAAGCTCTTCGTCAAGCCCTCCAGGACTACGTCACCAAGGTCGGAAGAGAGGCTCTGGAGCAGAGATGTCAAGAAGCGCTTCAAGACCCCAAAATCTATGTACACACGATTCTTGAGGTCCACCAGAGGTATCAAGGACTCGTCGAGAGGTCATTCTCCAAAGAAGTTGGATTTGTGAAGTCGTTGGACACTGCCGCTATCGCCTTCATCAATAGAAATGCAGTGACCGAGAAGGCTCCAGAAACTCGAGTGCTCAAATCGCCGGAGCTCATTGCGAGATACTGTGACTTGTTGATGAAGAAGAACTCGAAGATGCCCGATGAGATGGAGATGGATGTGTTGCAGAAGAATGTGGTGAGTTTTTGGGGGATTTTTTAACCAAGAAAATGGCTCAGAACGGCTAAAAAGGCTYCAAAATAGTCTGAAATTAATGAAAATCGACTTTGGACCATTTTGGGCTAAAACGGGACAAAAGCGGCCCAAAAAAGGGTCAAAAATCATCTAAAATATATTTTGAGTGCCTCTGACCAATTTAAACCATTTTGAACCAATTTTTAGGCGTACTGGGGCAAGTTTGTACGCTAGAAACAATTTTTGACTACTTTGGGACCTATTAGTACTAATTTGGACCGAAAACGCTCTAAATAGTTGTTGTCTGACCAATTTAGACCATTTTAAGCCATTTTTTAGGTATTTTGGAGCAAATTTCAACGTCATTAAAGGCTTTTTGACCATTTCAAAGCTATTTTCTTTGGATTCTGACCCTTTTGACCCTAATTGTGATCAATTCGGGCAGAAATGGCTCAAAAACATTCAAATATGATTTCAAAGCGTTTCTGACCGATTCGGATCATTTTGGGCCGTTTTCTGGCCGCTTGGTTGAGTTTGGGCTCTTTTTTACACTGATTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGATACTGTGACTTGTTGATGA</pcr_primer_p1>
		<pcr_primer_p2>TTTAGATGATTTTTGACCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>GAGATACTGTGACTTGTTGATGAAGAAGAACTCGAAGATGCCCGATGAGATGGAGATGGATGTGTTGCAGAAGAATGTGGTGAGTTTTTGGGGGATTTTTTAACCAAGAAAATGGCTCAGAACGGCTAAAAAGGCTTCAAAATAGTCTGAAATTAATGAAAATCGACTTTGGACCATTTTGGGCTAAAACGGGACAAAAGCGGCCCAAAAAAGGGTCAAAAATCATCTAAA</canonical_amplicon>
		<polymorphic_amplicon>GAGATACTGTGACTTGTTGATGAAGAAGAACTCGAAGATGCCCGATGAGATGGAGATGGATGTGTTGCAGAAGAATGTGGTGAGTTTTTGGGGGATTTTTTAACCAAGAAAATGGCTCAGAACGGCTAAAAAGGCTYCAAAATAGTCTGAAATTAATGAAAATCGACTTTGGACCATTTTGGGCTAAAACGGGACAAAAGCGGCCCAAAAAAGGGTCAAAAATCATCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14184</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>145099</contig_pos>
        <strand></strand>
        <context>TATCAGTTAA[T/G]CAGAAAACAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAA</left_flank>
        <right_flank>CAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGAATTTCTGAATTTTTGAATTTCTGAAATTTTGCTCATTGGAAAAGTTTGGAAATTTGAAAAATTCGAAAAGACTCGAAAAACCAAAATTCTGATAACCCGGAAATTCTGAAACTTTGAAAATACGAAACTCGGAAATTCGCAAACCCTGGGTCCTGGGTCCTGGGTCCTGGGTCCTGGATCCTGGGTCCAAAAATTATAAAATTCGGAATTTCCTCAAAATCCGGAAATTCTGAAATTCGAAAAATCGGAAACTCTAAAACTACCGTGATAACGCACAAAACCACAAATTTGACTTTTTATCAGTTACCATCAACCGCAATTTGACTGAAAATTTGCTCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTTTTCTGGAATTTTTCGGAAGAAATTTTTTTTTGATAGTACAGAATATTTTTGTAGTCAAATACCTTAAGGAAAGTAGGCGGAGCCATTTAACAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATAGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAGCTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAGACGGAGAGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAGGCGGAGAGGCGAG</canonical>
            <polymorphic>TTCTGAATTTCTGAATTTTTGAATTTCTGAAATTTTGCTCATTGGAAAAGTTTGGAAATTTGAAAAATTCGAAAAGACTCGAAAAACCAAAATTCTGATAACCCGGAAATTCTGAAACTTTGAAAATACGAAACTCGGAAATTCGCAAACCCTGGGTCCTGGGTCCTGGGTCCTGGGTCCTGGATCCTGGGTCCAAAAATTATAAAATTCGGAATTTCCTCAAAATCCGGAAATTCTGAAATTCGAAAAATCGGAAACTCTAAAACTACCGTGATAACGCACAAAACCACAAATTTGACTTTTTATCAGTTACCATCAACCGCAATTTGACTGAAAATTTGCTCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAAKCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTTTTCTGGAATTTTTCGGAAGAAATTTTTTTTTGATAGTACAGAATATTTTTGTAGTCAAATACCTTAAGGAAAGTAGGCGGAGCCATTTAACAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATAGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAGCTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAGACGGAGAGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAGGCGGAGAGGCGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>240 154 95 87 74 68 62 44 33 26 24 23 17 16 16 9 8 4</canonical_bands>
                <polymorphic_bands>240 154 106 95 87 74 68 33 26 24 23 17 16 16 9 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATCAGAGAAAAAGTACTTCAAA</pcr_primer_p1>
		<pcr_primer_p2>AACAGAGAGACAAAGTTCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTT</canonical_amplicon>
		<polymorphic_amplicon>TCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAAKCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14185</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>145139</contig_pos>
        <strand></strand>
        <context>CTGATAATTT[G/A]GGTGTGSCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTT</left_flank>
        <right_flank>GGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGGAAAAGTTTGGAAATTTGAAAAATTCGAAAAGACTCGAAAAACCAAAATTCTGATAACCCGGAAATTCTGAAACTTTGAAAATACGAAACTCGGAAATTCGCAAACCCTGGGTCCTGGGTCCTGGGTCCTGGGTCCTGGATCCTGGGTCCAAAAATTATAAAATTCGGAATTTCCTCAAAATCCGGAAATTCTGAAATTCGAAAAATCGGAAACTCTAAAACTACCGTGATAACGCACAAAACCACAAATTTGACTTTTTATCAGTTACCATCAACCGCAATTTGACTGAAAATTTGCTCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTTTTCTGGAATTTTTCGGAAGAAATTTTTTTTTGATAGTACAGAATATTTTTGTAGTCAAATACCTTAAGGAAAGTAGGCGGAGCCATTTAACAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATAGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAGCTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAGACGGAGAGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGAGGCGAGAA</canonical>
            <polymorphic>ATTGGAAAAGTTTGGAAATTTGAAAAATTCGAAAAGACTCGAAAAACCAAAATTCTGATAACCCGGAAATTCTGAAACTTTGAAAATACGAAACTCGGAAATTCGCAAACCCTGGGTCCTGGGTCCTGGGTCCTGGGTCCTGGATCCTGGGTCCAAAAATTATAAAATTCGGAATTTCCTCAAAATCCGGAAATTCTGAAATTCGAAAAATCGGAAACTCTAAAACTACCGTGATAACGCACAAAACCACAAATTTGACTTTTTATCAGTTACCATCAACCGCAATTTGACTGAAAATTTGCTCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTRGGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTTTTCTGGAATTTTTCGGAAGAAATTTTTTTTTGATAGTACAGAATATTTTTGTAGTCAAATACCTTAAGGAAAGTAGGCGGAGCCATTTAACAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATAGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAGCTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAGACGGAGAGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGAGGCGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCAGAGAAAAAGTACTTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAAACAGAGAGACAAAGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTTTTC</canonical_amplicon>
		<polymorphic_amplicon>CATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTRGGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14186</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>145146</contig_pos>
        <strand></strand>
        <context>TTTRGGTGTG[C/G]CCACACCCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTG</left_flank>
        <right_flank>CCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTTTTCTGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTTTGGAAATTTGAAAAATTCGAAAAGACTCGAAAAACCAAAATTCTGATAACCCGGAAATTCTGAAACTTTGAAAATACGAAACTCGGAAATTCGCAAACCCTGGGTCCTGGGTCCTGGGTCCTGGGTCCTGGATCCTGGGTCCAAAAATTATAAAATTCGGAATTTCCTCAAAATCCGGAAATTCTGAAATTCGAAAAATCGGAAACTCTAAAACTACCGTGATAACGCACAAAACCACAAATTTGACTTTTTATCAGTTACCATCAACCGCAATTTGACTGAAAATTTGCTCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTTTTCTGGAATTTTTCGGAAGAAATTTTTTTTTGATAGTACAGAATATTTTTGTAGTCAAATACCTTAAGGAAAGTAGGCGGAGCCATTTAACAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATAGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAGCTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAGACGGAGAGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAGACG</canonical>
            <polymorphic>AAGTTTGGAAATTTGAAAAATTCGAAAAGACTCGAAAAACCAAAATTCTGATAACCCGGAAATTCTGAAACTTTGAAAATACGAAACTCGGAAATTCGCAAACCCTGGGTCCTGGGTCCTGGGTCCTGGGTCCTGGATCCTGGGTCCAAAAATTATAAAATTCGGAATTTCCTCAAAATCCGGAAATTCTGAAATTCGAAAAATCGGAAACTCTAAAACTACCGTGATAACGCACAAAACCACAAATTTGACTTTTTATCAGTTACCATCAACCGCAATTTGACTGAAAATTTGCTCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGSCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTTTTCTGGAATTTTTCGGAAGAAATTTTTTTTTGATAGTACAGAATATTTTTGTAGTCAAATACCTTAAGGAAAGTAGGCGGAGCCATTTAACAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATAGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAGCTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAGACGGAGAGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAGACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGAAAAAGTACTTCAAAATTCAG</pcr_primer_p1>
		<pcr_primer_p2>ATTCCAGAAAACAGAGAGACAA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTTTTCTGGAAT</canonical_amplicon>
		<polymorphic_amplicon>AGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGSCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTTTTCTGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14189</snp_id>
        <super_contig>c007800845.Contig2</super_contig>
        <contig_pos>42774</contig_pos>
        <strand>+</strand>
        <context>AGGAAGAAAA[G/T]AAGAGTTAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAGTTTGAACTGAAAAAAGCGAAATAATAATTGTGAGGAGAGGAAGAAAA</left_flank>
        <right_flank>AAGAGTTAGAAAACGATTGAAGGAAAAAGGTAGAGAACAAGTTGGAAGTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGATATCAGCAACATTTTATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGATACATGTGCTCAAATTTAACTATTTGGGTGGAGTTCTTTTAGAGTGTTTACGGTATATCAAAATAAAATCAACTAACAACATGTTCTTGATATTACGATACACAATTTATAGTTTGGCAACTTTTTCATATCTCTGACAGGGACCGAGAAAAATTGACTCAAAGTAAAAAGCCAGGAAGCTTTTCTATAACAGATTACGGTATTTATGTTCAAAAAATGAAATTACCTATTCTTTCCGATGGAACATCTCGGATCGGTGCACTGATCCGTCTTGCACCAACTCCACCAGCTGGTCTCATAACGACCGAATCCCCTGCCACCACAACAGTCTTGGAGACTGATGGTCGCTTGACTGGGGTGGTTGGGAACTGCATGGCGTTGGGATGGGGAGTTTGAACTGAAAAAAGCGAAATAATAATTGTGAGGAGAGGAAGAAAAGAAGAGTTAGAAAACGATTGAAGGAAAAAGGTAGAGAACAAGTTGGAAGTAATTAATGAGTGGATCCTAATGTCTACAGAGATACGAAAACGAGATAGAGGGCGGAGTCTGAAGGTCCCTCTCATGGGGCGGGGCCAAATCGAATGGGGAATGGGTACATACAGGGGAGCAACAAGAACGGGAGAGAGAGAGGATATATAATAGGAGGTGCCTGGTAACAACATGGTTTCCTGTGGGATATGAAGGGTTATAGACAGATGAGTGGCAAGAAACGTCATTATAATGGATTTACGATAGTTATAGAACATAACGATGATTGACAGTTTTCCAATGAAAGAAACAATAATTTGGTTAAGATTCAGCACACCCCAAACAAAGATGTAGAAGGCCACCCAAGCCGCCAACTTTGAATCTATATATCTCATTTCCTGTGAGAGTTATCAAAAAGTGGTAAACGGATAAAATGCTTATCATAAAGTCAGAAAAAAACTTTATCCGTTG</canonical>
            <polymorphic>CATGATATCAGCAACATTTTATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGATACATGTGCTCAAATTTAACTATTTGGGTGGAGTTCTTTTAGAGTGTTTACGGTATATCAAAATAAAATCAACTAACAACATGTTCTTGATATTACGATACACAATTTATAGTTTGGCAACTTTTTCATATCTCTGACAGGGACCGAGAAAAATTGACTCAAAGTAAAAAGCCAGGAAGCTTTTCTATAACAGATTACGGTATTTATGTTCAAAAAATGAAATTACCTATTCTTTCCGATGGAACATCTCGGATCGGTGCACTGATCCGTCTTGCACCAACTCCACCAGCTGGTCTCATAACGACCGAATCCCCTGCCACCACAACAGTCTTGGAGACTGATGGTCGCTTGACTGGGGTGGTTGGGAACTGCATGGCGTTGGGATGGGGAGTTTGAACTGAAAAAAGCGAAATAATAATTGTGAGGAGAGGAAGAAAAKAAGAGTTAGAAAACGATTGAAGGAAAAAGGTAGAGAACAAGTTGGAAGTAATTAATGAGTGGATCCTAATGTCTACAGAGATACGAAAACGAGATAGAGGGCGGAGTCTGAAGGTCCCTCTCATGGGGCGGGGCCAAATCGAATGGGGAATGGGTACATACAGGGGAGCAACAAGAACGGGAGAGAGAGAGGATATATAATAGGAGGTGCCTGGTAACAACATGGTTTCCTGTGGGATATGAAGGGTTATAGACAGATGAGTGGCAAGAAACGTCATTATAATGGATTTACGATAGTTATAGAACATAACGATGATTGACAGTTTTCCAATGAAAGAAACAATAATTTGGTTAAGATTCAGCACACCCCAAACAAAGATGTAGAAGGCCACCCAAGCCGCCAACTTTGAATCTATATATCTCATTTCCTGTGAGAGTTATCAAAAAGTGGTAAACGGATAAAATGCTTATCATAAAGTCAGAAAAAAACTTTATCCGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTCTTTCCGATGGAACAT</pcr_primer_p1>
		<pcr_primer_p2>CATTAATTACTTCCAACTTGTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>270</pcr_amplicon_size>
		<canonical_amplicon>CTATTCTTTCCGATGGAACATCTCGGATCGGTGCACTGATCCGTCTTGCACCAACTCCACCAGCTGGTCTCATAACGACCGAATCCCCTGCCACCACAACAGTCTTGGAGACTGATGGTCGCTTGACTGGGGTGGTTGGGAACTGCATGGCGTTGGGATGGGGAGTTTGAACTGAAAAAAGCGAAATAATAATTGTGAGGAGAGGAAGAAAAGAAGAGTTAGAAAACGATTGAAGGAAAAAGGTAGAGAACAAGTTGGAAGTAATTAATG</canonical_amplicon>
		<polymorphic_amplicon>CTATTCTTTCCGATGGAACATCTCGGATCGGTGCACTGATCCGTCTTGCACCAACTCCACCAGCTGGTCTCATAACGACCGAATCCCCTGCCACCACAACAGTCTTGGAGACTGATGGTCGCTTGACTGGGGTGGTTGGGAACTGCATGGCGTTGGGATGGGGAGTTTGAACTGAAAAAAGCGAAATAATAATTGTGAGGAGAGGAAGAAAAKAAGAGTTAGAAAACGATTGAAGGAAAAAGGTAGAGAACAAGTTGGAAGTAATTAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14190</snp_id>
        <super_contig>c007800845.Contig2</super_contig>
        <contig_pos>55076</contig_pos>
        <strand>+</strand>
        <context>CACTAAAGTG[C/T]CCATACATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCCTCTCCGATGCCCTTCGTTCCGTGATCACCGAGCCACCACTAAAGTG</left_flank>
        <right_flank>CCATACATTTCTCCCCGCTTATCGACGCTCCGCCCACGGTCTCATCTCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCAATGTCCACTCCCGTTCGTCCGAAGCCATATTCCTTGAGAACTGATCGGAGTTATCGGACATCAGTGATTCGTGGACCAACAGGAGAGCGCAGAAAACGAGTAGCTTCTCCTATTCGTTACAGCCCGATATCGAGAGTTGGTAATAGAGGAAATTCCATGTTTCACAAAGAAATTTTGTTCGTTCCAGCACCATCCGAACTGGCTAACGCCCCAAAAGCAAAAAGAACTCGTAAGGCACGTCTATCACTGGATCGTTTCAACGCTTACACCGATATTTCGCCTCGTCCAGAAGGTGTCTCTCATCCATCCCCACATCTTCGCGAAAACATGCCGATTCCACGTCTGCAGTTTGACAACGAAGACTTCATGGATATGTACGCAGATGAGAATAGTAATGACACCCCAACACGTCATCGCCCGGATTCTGTTGCATTTTTGTCTCAGTGCCTCTCCGATGCCCTTCGTTCCGTGATCACCGAGCCACCACTAAAGTGTCCATACATTTCTCCCCGCTTATCGACGCTCCGCCCACGGTCTCATCTCAGAACTCCAGAATACTGTTATTCAAGAAAGACAACTGCTGCTAATATTCCAAAAATGCTCGTCGCGGATAAAGAAAACTAATCAAATTATTCTTCAATTTCACCCAGTTTTATCCCATCCCATTGGTTCTCAAAAGTTCCTCAACTGTTCTCTTTTATCACAGCCACTTGAAATCTCACCCAAAATTCTATTTGTTCGTATGTCTTGCCTAGGGTACCTCACTTCTTTACTGAAACCGAATAAACTGTACAATTTTTATATTCATTGCGAATAAGTGGTGAGTTGAATGTTTCTAGTAATGTCGAAGCAGTTAAATTAATCAAGATAAACTAGATAAGTCAATTATTTCTTCAAACGGAGACGCGAACTGATCTCTCGATGAGGCAAATCCTTTCGTACCACTTTGTTTCGGAATTCTTCGGCGCATTTTGTGGAGACCTGAAAGATGAACT</canonical>
            <polymorphic>CTTCAATGTCCACTCCCGTTCGTCCGAAGCCATATTCCTTGAGAACTGATCGGAGTTATCGGACATCAGTGATTCGTGGACCAACAGGAGAGCGCAGAAAACGAGTAGCTTCTCCTATTCGTTACAGCCCGATATCGAGAGTTGGTAATAGAGGAAATTCCATGTTTCACAAAGAAATTTTGTTCGTTCCAGCACCATCCGAACTGGCTAACGCCCCAAAAGCAAAAAGAACTCGTAAGGCACGTCTATCACTGGATCGTTTCAACGCTTACACCGATATTTCGCCTCGTCCAGAAGGTGTCTCTCATCCATCCCCACATCTTCGCGAAAACATGCCGATTCCACGTCTGCAGTTTGACAACGAAGACTTCATGGATATGTACGCAGATGAGAATAGTAATGACACCCCAACACGTCATCGCCCGGATTCTGTTGCATTTTTGTCTCAGTGCCTCTCCGATGCCCTTCGTTCCGTGATCACCGAGCCACCACTAAAGTGYCCATACATTTCTCCCCGCTTATCGACGCTCCGCCCACGGTCTCATCTCAGAACTCCAGAATACTGTTATTCAAGAAAGACAACTGCTGCTAATATTCCAAAAATGCTCGTCGCGGATAAAGAAAACTAATCAAATTATTCTTCAATTTCACCCAGTTTTATCCCATCCCATTGGTTCTCAAAAGTTCCTCAACTGTTCTCTTTTATCACAGCCACTTGAAATCTCACCCAAAATTCTATTTGTTCGTATGTCTTGCCTAGGGTACCTCACTTCTTTACTGAAACCGAATAAACTGTACAATTTTTATATTCATTGCGAATAAGTGGTGAGTTGAATGTTTCTAGTAATGTCGAAGCAGTTAAATTAATCAAGATAAACTAGATAAGTCAATTATTTCTTCAAACGGAGACGCGAACTGATCTCTCGATGAGGCAAATCCTTTCGTACCACTTTGTTTCGGAATTCTTCGGCGCATTTTGTGGAGACCTGAAAGATGAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACGAAGACTTCATGGATATGTA</pcr_primer_p1>
		<pcr_primer_p2>ACGAGCATTTTTGGAATATTAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AACGAAGACTTCATGGATATGTACGCAGATGAGAATAGTAATGACACCCCAACACGTCATCGCCCGGATTCTGTTGCATTTTTGTCTCAGTGCCTCTCCGATGCCCTTCGTTCCGTGATCACCGAGCCACCACTAAAGTGTCCATACATTTCTCCCCGCTTATCGACGCTCCGCCCACGGTCTCATCTCAGAACTCCAGAATACTGTTATTCAAGAAAGACAACTGCTGCTAATATTCCAAAAATGCTCGT</canonical_amplicon>
		<polymorphic_amplicon>AACGAAGACTTCATGGATATGTACGCAGATGAGAATAGTAATGACACCCCAACACGTCATCGCCCGGATTCTGTTGCATTTTTGTCTCAGTGCCTCTCCGATGCCCTTCGTTCCGTGATCACCGAGCCACCACTAAAGTGYCCATACATTTCTCCCCGCTTATCGACGCTCCGCCCACGGTCTCATCTCAGAACTCCAGAATACTGTTATTCAAGAAAGACAACTGCTGCTAATATTCCAAAAATGCTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14191</snp_id>
        <super_contig>c007800845.Contig2</super_contig>
        <contig_pos>55031</contig_pos>
        <strand>+</strand>
        <context>CTCAGTGCCT[A/C]TCCGATGCCC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACCCCAACACGTCATCGCCCGGATTCTGTTGCATTTTTGTCTCAGTGCCT</left_flank>
        <right_flank>TCCGATGCCCTTCGTTCCGTGATCACCGAGCCACCACTAAAGTGTCCATA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAACTACTCGTCCCAACCACTTTGCATCCAAAAGGTACTAGAACTTCAATGTCCACTCCCGTTCGTCCGAAGCCATATTCCTTGAGAACTGATCGGAGTTATCGGACATCAGTGATTCGTGGACCAACAGGAGAGCGCAGAAAACGAGTAGCTTCTCCTATTCGTTACAGCCCGATATCGAGAGTTGGTAATAGAGGAAATTCCATGTTTCACAAAGAAATTTTGTTCGTTCCAGCACCATCCGAACTGGCTAACGCCCCAAAAGCAAAAAGAACTCGTAAGGCACGTCTATCACTGGATCGTTTCAACGCTTACACCGATATTTCGCCTCGTCCAGAAGGTGTCTCTCATCCATCCCCACATCTTCGCGAAAACATGCCGATTCCACGTCTGCAGTTTGACAACGAAGACTTCATGGATATGTACGCAGATGAGAATAGTAATGACACCCCAACACGTCATCGCCCGGATTCTGTTGCATTTTTGTCTCAGTGCCTCTCCGATGCCCTTCGTTCCGTGATCACCGAGCCACCACTAAAGTGTCCATACATTTCTCCCCGCTTATCGACGCTCCGCCCACGGTCTCATCTCAGAACTCCAGAATACTGTTATTCAAGAAAGACAACTGCTGCTAATATTCCAAAAATGCTCGTCGCGGATAAAGAAAACTAATCAAATTATTCTTCAATTTCACCCAGTTTTATCCCATCCCATTGGTTCTCAAAAGTTCCTCAACTGTTCTCTTTTATCACAGCCACTTGAAATCTCACCCAAAATTCTATTTGTTCGTATGTCTTGCCTAGGGTACCTCACTTCTTTACTGAAACCGAATAAACTGTACAATTTTTATATTCATTGCGAATAAGTGGTGAGTTGAATGTTTCTAGTAATGTCGAAGCAGTTAAATTAATCAAGATAAACTAGATAAGTCAATTATTTCTTCAAACGGAGACGCGAACTGATCTCTCGATGAGGCAAATCCTTTCGTACCACTTTGT</canonical>
            <polymorphic>GAAAACTACTCGTCCCAACCACTTTGCATCCAAAAGGTACTAGAACTTCAATGTCCACTCCCGTTCGTCCGAAGCCATATTCCTTGAGAACTGATCGGAGTTATCGGACATCAGTGATTCGTGGACCAACAGGAGAGCGCAGAAAACGAGTAGCTTCTCCTATTCGTTACAGCCCGATATCGAGAGTTGGTAATAGAGGAAATTCCATGTTTCACAAAGAAATTTTGTTCGTTCCAGCACCATCCGAACTGGCTAACGCCCCAAAAGCAAAAAGAACTCGTAAGGCACGTCTATCACTGGATCGTTTCAACGCTTACACCGATATTTCGCCTCGTCCAGAAGGTGTCTCTCATCCATCCCCACATCTTCGCGAAAACATGCCGATTCCACGTCTGCAGTTTGACAACGAAGACTTCATGGATATGTACGCAGATGAGAATAGTAATGACACCCCAACACGTCATCGCCCGGATTCTGTTGCATTTTTGTCTCAGTGCCTMTCCGATGCCCTTCGTTCCGTGATCACCGAGCCACCACTAAAGTGTCCATACATTTCTCCCCGCTTATCGACGCTCCGCCCACGGTCTCATCTCAGAACTCCAGAATACTGTTATTCAAGAAAGACAACTGCTGCTAATATTCCAAAAATGCTCGTCGCGGATAAAGAAAACTAATCAAATTATTCTTCAATTTCACCCAGTTTTATCCCATCCCATTGGTTCTCAAAAGTTCCTCAACTGTTCTCTTTTATCACAGCCACTTGAAATCTCACCCAAAATTCTATTTGTTCGTATGTCTTGCCTAGGGTACCTCACTTCTTTACTGAAACCGAATAAACTGTACAATTTTTATATTCATTGCGAATAAGTGGTGAGTTGAATGTTTCTAGTAATGTCGAAGCAGTTAAATTAATCAAGATAAACTAGATAAGTCAATTATTTCTTCAAACGGAGACGCGAACTGATCTCTCGATGAGGCAAATCCTTTCGTACCACTTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACGAAGACTTCATGGATATGTA</pcr_primer_p1>
		<pcr_primer_p2>ACGAGCATTTTTGGAATATTAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AACGAAGACTTCATGGATATGTACGCAGATGAGAATAGTAATGACACCCCAACACGTCATCGCCCGGATTCTGTTGCATTTTTGTCTCAGTGCCTCTCCGATGCCCTTCGTTCCGTGATCACCGAGCCACCACTAAAGTGTCCATACATTTCTCCCCGCTTATCGACGCTCCGCCCACGGTCTCATCTCAGAACTCCAGAATACTGTTATTCAAGAAAGACAACTGCTGCTAATATTCCAAAAATGCTCGT</canonical_amplicon>
		<polymorphic_amplicon>AACGAAGACTTCATGGATATGTACGCAGATGAGAATAGTAATGACACCCCAACACGTCATCGCCCGGATTCTGTTGCATTTTTGTCTCAGTGCCTMTCCGATGCCCTTCGTTCCGTGATCACCGAGCCACCACTAAAGTGTCCATACATTTCTCCCCGCTTATCGACGCTCCGCCCACGGTCTCATCTCAGAACTCCAGAATACTGTTATTCAAGAAAGACAACTGCTGCTAATATTCCAAAAATGCTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14192</snp_id>
        <super_contig>c007800845.Contig2</super_contig>
        <contig_pos>66339</contig_pos>
        <strand>+</strand>
        <context>TCCACAGAGC[A/G]CAAAGCTCGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAAATTCGGAGAGAACTTGAGAAAGCATCGATTCGTGTTTCCACAGAGC</left_flank>
        <right_flank>CAAAGCTCGCTTACAAGCCGAAGAAATTCTGGAGGAAACGAAAAGATCTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTCGATTCTCGAAAAGTCGATCATCACTGAATCTTTTGTTGCTGACGTATCAAGAAGATTCACAATTGCACCGCATTCTGAAGGTATTTTTTTTGTAAATTTGGCATTTTGAATCTATTTTTAAGATGTTGCCTCTTCGTCACTTCTTAATGCATCCTATAGCCCAATCTTCAAATTTTCAAGCAATACAATTGAAGTGGAGAAGCTTCAAAATGAAGTCGCAGAATTGAGAAGCGAACTCGACAAGGCTCGTGCAAGAGAGTTGAAGTCCCCTCTACAAGGCTCACCGGGGCGATTGTCAGATGTACAGATCAAGGCAGCTCAGAACTTCGAAGATCTTGAAGTGTGTCAGGCGACACTCAAAAAAATCGAATCAGAAAAGGCCGAGCTGGAAAGTGAAATTGCTAAGCACGAGCTTACTCATCACCGACTTGTCAACGAGTTAGAGGAAATTCGGAGAGAACTTGAGAAAGCATCGATTCGTGTTTCCACAGAGCGCAAAGCTCGCTTACAAGCCGAAGAAATTCTGGAGGAAACGAAAAGATCTGTTCAACAACTCAAGAAAGAACATGAAAATGCTATGATGATTGAGGTTGATTATCGTGTCACAGAAGCTCGTGAGCAAGTTGAAAGAGAGAGCAAGCAAGTCATTGAAAGTCTTTCGGTCGAACTTCGCACTGCGTTGGCTGAAGAGAACGCGGTCCGGGATCACTTGGAGGAAATGAAAGATGAAATGCAGAAATTGAAACGAAGAACTAAAGAAGCAGAAGACAAGGTCGAATTCTCAGCCAATGAGAAGCAGGAGATGATGGGACACATTGCCAATTTAGAAGAGCATCTCGAGAAAGTTTCTCTCCAGGAAAAAGAATTTACCGACTGTGATGCTAAATTGACAGCTAGAAAGAAGGAAATCGAGTTGATCAAATCACGAGACGACATGGAGTTGGCCGCTATTGAAGGATTGGAACGGGTCAGAAAAGAGATTGCTGAGCTGACCA</canonical>
            <polymorphic>TTCTCGATTCTCGAAAAGTCGATCATCACTGAATCTTTTGTTGCTGACGTATCAAGAAGATTCACAATTGCACCGCATTCTGAAGGTATTTTTTTTGTAAATTTGGCATTTTGAATCTATTTTTAAGATGTTGCCTCTTCGTCACTTCTTAATGCATCCTATAGCCCAATCTTCAAATTTTCAAGCAATACAATTGAAGTGGAGAAGCTTCAAAATGAAGTCGCAGAATTGAGAAGCGAACTCGACAAGGCTCGTGCAAGAGAGTTGAAGTCCCCTCTACAAGGCTCACCGGGGCGATTGTCAGATGTACAGATCAAGGCAGCTCAGAACTTCGAAGATCTTGAAGTGTGTCAGGCGACACTCAAAAAAATCGAATCAGAAAAGGCCGAGCTGGAAAGTGAAATTGCTAAGCACGAGCTTACTCATCACCGACTTGTCAACGAGTTAGAGGAAATTCGGAGAGAACTTGAGAAAGCATCGATTCGTGTTTCCACAGAGCRCAAAGCTCGCTTACAAGCCGAAGAAATTCTGGAGGAAACGAAAAGATCTGTTCAACAACTCAAGAAAGAACATGAAAATGCTATGATGATTGAGGTTGATTATCGTGTCACAGAAGCTCGTGAGCAAGTTGAAAGAGAGAGCAAGCAAGTCATTGAAAGTCTTTCGGTCGAACTTCGCACTGCGTTGGCTGAAGAGAACGCGGTCCGGGATCACTTGGAGGAAATGAAAGATGAAATGCAGAAATTGAAACGAAGAACTAAAGAAGCAGAAGACAAGGTCGAATTCTCAGCCAATGAGAAGCAGGAGATGATGGGACACATTGCCAATTTAGAAGAGCATCTCGAGAAAGTTTCTCTCCAGGAAAAAGAATTTACCGACTGTGATGCTAAATTGACAGCTAGAAAGAAGGAAATCGAGTTGATCAAATCACGAGACGACATGGAGTTGGCCGCTATTGAAGGATTGGAACGGGTCAGAAAAGAGATTGCTGAGCTGACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGAAGATCTTGAAGTGTGTC</pcr_primer_p1>
		<pcr_primer_p2>CATTTTCATGTTCTTTCTTGAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCGAAGATCTTGAAGTGTGTCAGGCGACACTCAAAAAAATCGAATCAGAAAAGGCCGAGCTGGAAAGTGAAATTGCTAAGCACGAGCTTACTCATCACCGACTTGTCAACGAGTTAGAGGAAATTCGGAGAGAACTTGAGAAAGCATCGATTCGTGTTTCCACAGAGCGCAAAGCTCGCTTACAAGCCGAAGAAATTCTGGAGGAAACGAAAAGATCTGTTCAACAACTCAAGAAAGAACATGAAAATG</canonical_amplicon>
		<polymorphic_amplicon>TCGAAGATCTTGAAGTGTGTCAGGCGACACTCAAAAAAATCGAATCAGAAAAGGCCGAGCTGGAAAGTGAAATTGCTAAGCACGAGCTTACTCATCACCGACTTGTCAACGAGTTAGAGGAAATTCGGAGAGAACTTGAGAAAGCATCGATTCGTGTTTCCACAGAGCRCAAAGCTCGCTTACAAGCCGAAGAAATTCTGGAGGAAACGAAAAGATCTGTTCAACAACTCAAGAAAGAACATGAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14194</snp_id>
        <super_contig>c007800845.Contig2</super_contig>
        <contig_pos>67972</contig_pos>
        <strand>+</strand>
        <context>TTCGTGACTC[C/T]ACCAGctccg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTTTTTCTTATCTGCAAATGAATCTTTTAAGCATGATTTTCGTGACTC</left_flank>
        <right_flank>ACCAGCTCCGAGGAACCGATTTCGAGGCAATCGTGCCGGAATTTCAACTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGATTCTTGAGGAAGAAATCAAGAAATATAAGAAGGAGTTGAAACTTACCAAAGCGGTCGTTCCAGTGAGTTCGAACTCTACCGATGATCTGACGACAATTATTTTTTTTCAGAATCTTGGTGCTGATGTTCAGGAGAGAATCAAGAGAGAGATCGGTGGAATCGCCAAAGATATGGGAGCTGTAAAAGAATTGAGAAAGAAGTAATCACACCTCCGTTTACTGCATAATTATTGAACGAGTTTTACCAAGACGGGAACACACACTCTAACTCCCGAAATTGTATTTTATTCTAACCGTATTCGTACATTTATCGTATGTGCTTATAAATGAAAATTTTCTACTTGTGTTTCAAACGAAGTTTTTTTCAGATTTATTCTACAGTCTGCGAGAACTCGTTGAAAAAAGCTCTGAAACATTTGAAACTAGACTTCTCGGGGGCATCATCGATTTTTTCTTATCTGCAAATGAATCTTTTAAGCATGATTTTCGTGACTCCACCAGCTCCGAGGAACCGATTTCGAGGCAATCGTGCCGGAATTTCAACTTTTGCTAAACCAAATTAGACATGATTCCCCTTCTTTTCTAGCAAATGATCCTCGAGCAAATGAGTGCTGGAGATACTTAACTTGACATGTAGCACATAATAAAAAATGGCTCCTTTGAACTTATTGACTGGATTATAGAATACAGAATTTATTTGAAAAACAGTGAATTTTTAGCTTCATCCGACGATGAATACAGTCTCGTTTGAGGTTTGATAATAAGATATATATTGAAAATATAGTTACGAGATAATGAAAAAGAGACAAGCGTATTTTGAATGAATATCAAGGATAAAAATGGCACAGGTATTAGTTTTCTTCATCTTCGTCATCTTCTTCGAAGATTTGATGGAGGACGGCGGCATGACTTCCTGAAAAATAATTTATAGTTCAAAACAGGAACATCTCATACTCTCTTACTTCTATTTTTCACTTCTTCTTTTTCGGTGATAGC</canonical>
            <polymorphic>TTTGATTCTTGAGGAAGAAATCAAGAAATATAAGAAGGAGTTGAAACTTACCAAAGCGGTCGTTCCAGTGAGTTCGAACTCTACCGATGATCTGACGACAATTATTTTTTTTCAGAATCTTGGTGCTGATGTTCAGGAGAGAATCAAGAGAGAGATCGGTGGAATCGCCAAAGATATGGGAGCTGTAAAAGAATTGAGAAAGAAGTAATCACACCTCCGTTTACTGCATAATTATTGAACGAGTTTTACCAAGACGGGAACACACACTCTAACTCCCGAAATTGTATTTTATTCTAACCGTATTCGTACATTTATCGTATGTGCTTATAAATGAAAATTTTCTACTTGTGTTTCAAACGAAGTTTTTTTCAGATTTATTCTACAGTCTGCGAGAACTCGTTGAAAAAAGCTCTGAAACATTTGAAACTAGACTTCTCGGGGGCATCATCGATTTTTTCTTATCTGCAAATGAATCTTTTAAGCATGATTTTCGTGACTCYACCAGCTCCGAGGAACCGATTTCGAGGCAATCGTGCCGGAATTTCAACTTTTGCTAAACCAAATTAGACATGATTCCCCTTCTTTTCTAGCAAATGATCCTCGAGCAAATGAGTGCTGGAGATACTTAACTTGACATGTAGCACATAATAAAAAATGGCTCCTTTGAACTTATTGACTGGATTATAGAATACAGAATTTATTTGAAAAACAGTGAATTTTTAGCTTCATCCGACGATGAATACAGTCTCGTTTGAGGTTTGATAATAAGATATATATTGAAAATATAGTTACGAGATAATGAAAAAGAGACAAGCGTATTTTGAATGAATATCAAGGATAAAAATGGCACAGGTATTAGTTTTCTTCATCTTCGTCATCTTCTTCGAAGATTTGATGGAGGACGGCGGCATGACTTCCTGAAAAATAATTTATAGTTCAAAACAGGAACATCTCATACTCTCTTACTTCTATTTTTCACTTCTTCTTTTTCGGTGATAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>145 135 129 80 71 70 57 55 50 49 36 34 28 27 17 6 5 2 2 2</canonical_bands>
                <polymorphic_bands>145 135 129 80 71 70 57 55 50 49 40 36 28 27 17 5 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCTCTGAAACATTTGAAACTA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTATTATGTGCTACATGTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGCTCTGAAACATTTGAAACTAGACTTCTCGGGGGCATCATCGATTTTTTCTTATCTGCAAATGAATCTTTTAAGCATGATTTTCGTGACTCCACCAGCTCCGAGGAACCGATTTCGAGGCAATCGTGCCGGAATTTCAACTTTTGCTAAACCAAATTAGACATGATTCCCCTTCTTTTCTAGCAAATGATCCTCGAGCAAATGAGTGCTGGAGATACTTAACTTGACATGTAGCACATAATAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAGCTCTGAAACATTTGAAACTAGACTTCTCGGGGGCATCATCGATTTTTTCTTATCTGCAAATGAATCTTTTAAGCATGATTTTCGTGACTCYACCAGCTCCGAGGAACCGATTTCGAGGCAATCGTGCCGGAATTTCAACTTTTGCTAAACCAAATTAGACATGATTCCCCTTCTTTTCTAGCAAATGATCCTCGAGCAAATGAGTGCTGGAGATACTTAACTTGACATGTAGCACATAATAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14195</snp_id>
        <super_contig>c007800845.Contig2</super_contig>
        <contig_pos>67860</contig_pos>
        <strand>+</strand>
        <context>TTCTACAGTC[C/T]GCGAGAACTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCTACTTGTGTTTCAAACGAAGTTTTTTTCAGATTTATTCTACAGTC</left_flank>
        <right_flank>GCGAGAACTCGTTGAAAAAAGCTCTGAAACATTTGAAACTAGACTTCTCG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGATTATCTGCACAAAAAGTTGATTTTGTTCAAGGGAATCGATATGACAAAATGGGAGAATGCGTCGGTTGATAAGTTGGTCGAGAAACTTGGACAATATCAACAGGATAATTTGATTCTTGAGGAAGAAATCAAGAAATATAAGAAGGAGTTGAAACTTACCAAAGCGGTCGTTCCAGTGAGTTCGAACTCTACCGATGATCTGACGACAATTATTTTTTTTCAGAATCTTGGTGCTGATGTTCAGGAGAGAATCAAGAGAGAGATCGGTGGAATCGCCAAAGATATGGGAGCTGTAAAAGAATTGAGAAAGAAGTAATCACACCTCCGTTTACTGCATAATTATTGAACGAGTTTTACCAAGACGGGAACACACACTCTAACTCCCGAAATTGTATTTTATTCTAACCGTATTCGTACATTTATCGTATGTGCTTATAAATGAAAATTTTCTACTTGTGTTTCAAACGAAGTTTTTTTCAGATTTATTCTACAGTCTGCGAGAACTCGTTGAAAAAAGCTCTGAAACATTTGAAACTAGACTTCTCGGGGGCATCATCGATTTTTTCTTATCTGCAAATGAATCTTTTAAGCATGATTTTCGTGACTCCACCAGCTCCGAGGAACCGATTTCGAGGCAATCGTGCCGGAATTTCAACTTTTGCTAAACCAAATTAGACATGATTCCCCTTCTTTTCTAGCAAATGATCCTCGAGCAAATGAGTGCTGGAGATACTTAACTTGACATGTAGCACATAATAAAAAATGGCTCCTTTGAACTTATTGACTGGATTATAGAATACAGAATTTATTTGAAAAACAGTGAATTTTTAGCTTCATCCGACGATGAATACAGTCTCGTTTGAGGTTTGATAATAAGATATATATTGAAAATATAGTTACGAGATAATGAAAAAGAGACAAGCGTATTTTGAATGAATATCAAGGATAAAAATGGCACAGGTATTAGTTTTCTTCATCTTCGTCATCTTCTTCGAA</canonical>
            <polymorphic>GTGATTATCTGCACAAAAAGTTGATTTTGTTCAAGGGAATCGATATGACAAAATGGGAGAATGCGTCGGTTGATAAGTTGGTCGAGAAACTTGGACAATATCAACAGGATAATTTGATTCTTGAGGAAGAAATCAAGAAATATAAGAAGGAGTTGAAACTTACCAAAGCGGTCGTTCCAGTGAGTTCGAACTCTACCGATGATCTGACGACAATTATTTTTTTTCAGAATCTTGGTGCTGATGTTCAGGAGAGAATCAAGAGAGAGATCGGTGGAATCGCCAAAGATATGGGAGCTGTAAAAGAATTGAGAAAGAAGTAATCACACCTCCGTTTACTGCATAATTATTGAACGAGTTTTACCAAGACGGGAACACACACTCTAACTCCCGAAATTGTATTTTATTCTAACCGTATTCGTACATTTATCGTATGTGCTTATAAATGAAAATTTTCTACTTGTGTTTCAAACGAAGTTTTTTTCAGATTTATTCTACAGTCYGCGAGAACTCGTTGAAAAAAGCTCTGAAACATTTGAAACTAGACTTCTCGGGGGCATCATCGATTTTTTCTTATCTGCAAATGAATCTTTTAAGCATGATTTTCGTGACTCCACCAGCTCCGAGGAACCGATTTCGAGGCAATCGTGCCGGAATTTCAACTTTTGCTAAACCAAATTAGACATGATTCCCCTTCTTTTCTAGCAAATGATCCTCGAGCAAATGAGTGCTGGAGATACTTAACTTGACATGTAGCACATAATAAAAAATGGCTCCTTTGAACTTATTGACTGGATTATAGAATACAGAATTTATTTGAAAAACAGTGAATTTTTAGCTTCATCCGACGATGAATACAGTCTCGTTTGAGGTTTGATAATAAGATATATATTGAAAATATAGTTACGAGATAATGAAAAAGAGACAAGCGTATTTTGAATGAATATCAAGGATAAAAATGGCACAGGTATTAGTTTTCTTCATCTTCGTCATCTTCTTCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTGAACGAGTTTTACCAAGAC</pcr_primer_p1>
		<pcr_primer_p2>AAGATTCATTTGCAGATAAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TATTGAACGAGTTTTACCAAGACGGGAACACACACTCTAACTCCCGAAATTGTATTTTATTCTAACCGTATTCGTACATTTATCGTATGTGCTTATAAATGAAAATTTTCTACTTGTGTTTCAAACGAAGTTTTTTTCAGATTTATTCTACAGTCTGCGAGAACTCGTTGAAAAAAGCTCTGAAACATTTGAAACTAGACTTCTCGGGGGCATCATCGATTTTTTCTTATCTGCAAATGAATCTT</canonical_amplicon>
		<polymorphic_amplicon>TATTGAACGAGTTTTACCAAGACGGGAACACACACTCTAACTCCCGAAATTGTATTTTATTCTAACCGTATTCGTACATTTATCGTATGTGCTTATAAATGAAAATTTTCTACTTGTGTTTCAAACGAAGTTTTTTTCAGATTTATTCTACAGTCYGCGAGAACTCGTTGAAAAAAGCTCTGAAACATTTGAAACTAGACTTCTCGGGGGCATCATCGATTTTTTCTTATCTGCAAATGAATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14197</snp_id>
        <super_contig>c007800845.Contig2</super_contig>
        <contig_pos>68147</contig_pos>
        <strand>+</strand>
        <context>TGAACTTATT[A/G]ACTGGATTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTAACTTGACATGTAGCACATAATAAAAAATGGCTCCTTTGAACTTATT</left_flank>
        <right_flank>ACTGGATTATAGAATACAGAATTTATTTGAAAAACAGTGAATTTTTAGCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGGAGCTGTAAAAGAATTGAGAAAGAAGTAATCACACCTCCGTTTACTGCATAATTATTGAACGAGTTTTACCAAGACGGGAACACACACTCTAACTCCCGAAATTGTATTTTATTCTAACCGTATTCGTACATTTATCGTATGTGCTTATAAATGAAAATTTTCTACTTGTGTTTCAAACGAAGTTTTTTTCAGATTTATTCTACAGTCTGCGAGAACTCGTTGAAAAAAGCTCTGAAACATTTGAAACTAGACTTCTCGGGGGCATCATCGATTTTTTCTTATCTGCAAATGAATCTTTTAAGCATGATTTTCGTGACTCCACCAGCTCCGAGGAACCGATTTCGAGGCAATCGTGCCGGAATTTCAACTTTTGCTAAACCAAATTAGACATGATTCCCCTTCTTTTCTAGCAAATGATCCTCGAGCAAATGAGTGCTGGAGATACTTAACTTGACATGTAGCACATAATAAAAAATGGCTCCTTTGAACTTATTGACTGGATTATAGAATACAGAATTTATTTGAAAAACAGTGAATTTTTAGCTTCATCCGACGATGAATACAGTCTCGTTTGAGGTTTGATAATAAGATATATATTGAAAATATAGTTACGAGATAATGAAAAAGAGACAAGCGTATTTTGAATGAATATCAAGGATAAAAATGGCACAGGTATTAGTTTTCTTCATCTTCGTCATCTTCTTCGAAGATTTGATGGAGGACGGCGGCATGACTTCCTGAAAAATAATTTATAGTTCAAAACAGGAACATCTCATACTCTCTTACTTCTATTTTTCACTTCTTCTTTTTCGGTGATAGCGGATAAATTTAGAGAGAATGTCATATCGCCCGTATCGGAATCTCTTCCTCGAATCGGTGTTGAACATTGGCGACCGACAAGCTTTGATTCATCAAATAGCAGAGGTGTCGTTCCTCTTGGAGTGTTCTCAACATTCTCCGAAGTCGACGGAGCTGCAGAATCATGTTGATCTATC</canonical>
            <polymorphic>ATGGGAGCTGTAAAAGAATTGAGAAAGAAGTAATCACACCTCCGTTTACTGCATAATTATTGAACGAGTTTTACCAAGACGGGAACACACACTCTAACTCCCGAAATTGTATTTTATTCTAACCGTATTCGTACATTTATCGTATGTGCTTATAAATGAAAATTTTCTACTTGTGTTTCAAACGAAGTTTTTTTCAGATTTATTCTACAGTCTGCGAGAACTCGTTGAAAAAAGCTCTGAAACATTTGAAACTAGACTTCTCGGGGGCATCATCGATTTTTTCTTATCTGCAAATGAATCTTTTAAGCATGATTTTCGTGACTCCACCAGCTCCGAGGAACCGATTTCGAGGCAATCGTGCCGGAATTTCAACTTTTGCTAAACCAAATTAGACATGATTCCCCTTCTTTTCTAGCAAATGATCCTCGAGCAAATGAGTGCTGGAGATACTTAACTTGACATGTAGCACATAATAAAAAATGGCTCCTTTGAACTTATTRACTGGATTATAGAATACAGAATTTATTTGAAAAACAGTGAATTTTTAGCTTCATCCGACGATGAATACAGTCTCGTTTGAGGTTTGATAATAAGATATATATTGAAAATATAGTTACGAGATAATGAAAAAGAGACAAGCGTATTTTGAATGAATATCAAGGATAAAAATGGCACAGGTATTAGTTTTCTTCATCTTCGTCATCTTCTTCGAAGATTTGATGGAGGACGGCGGCATGACTTCCTGAAAAATAATTTATAGTTCAAAACAGGAACATCTCATACTCTCTTACTTCTATTTTTCACTTCTTCTTTTTCGGTGATAGCGGATAAATTTAGAGAGAATGTCATATCGCCCGTATCGGAATCTCTTCCTCGAATCGGTGTTGAACATTGGCGACCGACAAGCTTTGATTCATCAAATAGCAGAGGTGTCGTTCCTCTTGGAGTGTTCTCAACATTCTCCGAAGTCGACGGAGCTGCAGAATCATGTTGATCTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGCTGGAGATACTTAACTTGA</pcr_primer_p1>
		<pcr_primer_p2>AACTAATACCTGTGCCATTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTGCTGGAGATACTTAACTTGACATGTAGCACATAATAAAAAATGGCTCCTTTGAACTTATTGACTGGATTATAGAATACAGAATTTATTTGAAAAACAGTGAATTTTTAGCTTCATCCGACGATGAATACAGTCTCGTTTGAGGTTTGATAATAAGATATATATTGAAAATATAGTTACGAGATAATGAAAAAGAGACAAGCGTATTTTGAATGAATATCAAGGATAAAAATGGCACAGGTATTAGTT</canonical_amplicon>
		<polymorphic_amplicon>AGTGCTGGAGATACTTAACTTGACATGTAGCACATAATAAAAAATGGCTCCTTTGAACTTATTRACTGGATTATAGAATACAGAATTTATTTGAAAAACAGTGAATTTTTAGCTTCATCCGACGATGAATACAGTCTCGTTTGAGGTTTGATAATAAGATATATATTGAAAATATAGTTACGAGATAATGAAAAAGAGACAAGCGTATTTTGAATGAATATCAAGGATAAAAATGGCACAGGTATTAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14198</snp_id>
        <super_contig>c007800845.Contig2</super_contig>
        <contig_pos>71040</contig_pos>
        <strand>+</strand>
        <context>GTAGCATCAC[A/T]AGAGCGAGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCGGGTTTGATGAGCAGATGGCATTTCTGGGTTAACTGATGTAGCATCAC</left_flank>
        <right_flank>AGAGCGAGGGTCGTTGGAGTTGACAATCATAGACAGGGTCTTTGCAACCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCATTGCTAATGAGACGCGCGATTTGGTTGATGGCATGACGACGAACTAGCACAGACGGATCACAGAGTGATGCAGCCAACATCGGAGCGTATCGATCAGTTTTGAATCTGAATAATTAAGACAACTATGAGAACATCATCTAAAAATGAAACTCACGAGTTACACACATCTCCCATTGCAATCACAACGTTGGAACGAATTTGATGAGATGGATTGTGTTGAAGCTGCTTTACAAGTGAAGGCATTAGTTTCAGTAGACAATCATGCTGAAATGAAAGTTTTCGTTTTGGAAACAAAAAATTAATGTCTACCGCCACAATCATGTTCGTTAATGTGACAACTCCAACAGCGCGAACTTTATCACTGAACAGCAGGCCGCCGTGAGCCCTTATCCTCGCTTCATGACTTTCTTGCGACTGTGGATACTGCGAAAGCTGAGTAGATGGGCGGGTTTGATGAGCAGATGGCATTTCTGGGTTAACTGATGTAGCATCACTAGAGCGAGGGTCGTTGGAGTTGACAATCATAGACAGGGTCTTTGCAACCCGTTCATGACGTGGAATCAATTGTGGCGAGAATGAGAATACTTCGGTGGCAACGTTGAGAGATGTACAGAGAAGACGTTCTTGTAGTTCGGCGTTTCGGTTCCAATCATCTTTATTTCTGAACATGTCAAACGATTGGACGATGGTGTCGAAACATTTGACGAGAAGTTCGTCACCGAAATCTTGGAATTCCTGGGGATCTGAAACAAAGAAAGTGAGGGTTCGAAGCAATCGAAGGAGAACTCACGTGCTGATCTATCACCAATTCCATCCATCAGTTTCCCAAGACAATGGTATAAACTTCTGGCGTGTGATGAATGAAGACAGTAATCCCTCAGCGTACTTTTCAAAGAATACACTAGATCGCTCTTGGTATCAGCTTTGATTGACTTAACGTTGTTCACAATTACATGAACAATGTACTGCATGATATTCAACGGTTTCGATAAGTC</canonical>
            <polymorphic>TTCCATTGCTAATGAGACGCGCGATTTGGTTGATGGCATGACGACGAACTAGCACAGACGGATCACAGAGTGATGCAGCCAACATCGGAGCGTATCGATCAGTTTTGAATCTGAATAATTAAGACAACTATGAGAACATCATCTAAAAATGAAACTCACGAGTTACACACATCTCCCATTGCAATCACAACGTTGGAACGAATTTGATGAGATGGATTGTGTTGAAGCTGCTTTACAAGTGAAGGCATTAGTTTCAGTAGACAATCATGCTGAAATGAAAGTTTTCGTTTTGGAAACAAAAAATTAATGTCTACCGCCACAATCATGTTCGTTAATGTGACAACTCCAACAGCGCGAACTTTATCACTGAACAGCAGGCCGCCGTGAGCCCTTATCCTCGCTTCATGACTTTCTTGCGACTGTGGATACTGCGAAAGCTGAGTAGATGGGCGGGTTTGATGAGCAGATGGCATTTCTGGGTTAACTGATGTAGCATCACWAGAGCGAGGGTCGTTGGAGTTGACAATCATAGACAGGGTCTTTGCAACCCGTTCATGACGTGGAATCAATTGTGGCGAGAATGAGAATACTTCGGTGGCAACGTTGAGAGATGTACAGAGAAGACGTTCTTGTAGTTCGGCGTTTCGGTTCCAATCATCTTTATTTCTGAACATGTCAAACGATTGGACGATGGTGTCGAAACATTTGACGAGAAGTTCGTCACCGAAATCTTGGAATTCCTGGGGATCTGAAACAAAGAAAGTGAGGGTTCGAAGCAATCGAAGGAGAACTCACGTGCTGATCTATCACCAATTCCATCCATCAGTTTCCCAAGACAATGGTATAAACTTCTGGCGTGTGATGAATGAAGACAGTAATCCCTCAGCGTACTTTTCAAAGAATACACTAGATCGCTCTTGGTATCAGCTTTGATTGACTTAACGTTGTTCACAATTACATGAACAATGTACTGCATGATATTCAACGGTTTCGATAAGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>450 408 93 49</canonical_bands>
                <polymorphic_bands>858 93 49</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACTGCGAAAGCTGAGTAGAT</pcr_primer_p1>
		<pcr_primer_p2>TCAGAAATAAAGATGATTGGAAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATACTGCGAAAGCTGAGTAGATGGGCGGGTTTGATGAGCAGATGGCATTTCTGGGTTAACTGATGTAGCATCACTAGAGCGAGGGTCGTTGGAGTTGACAATCATAGACAGGGTCTTTGCAACCCGTTCATGACGTGGAATCAATTGTGGCGAGAATGAGAATACTTCGGTGGCAACGTTGAGAGATGTACAGAGAAGACGTTCTTGTAGTTCGGCGTTTCGGTTCCAATCATCTTTATTTCTGA</canonical_amplicon>
		<polymorphic_amplicon>ATACTGCGAAAGCTGAGTAGATGGGCGGGTTTGATGAGCAGATGGCATTTCTGGGTTAACTGATGTAGCATCACWAGAGCGAGGGTCGTTGGAGTTGACAATCATAGACAGGGTCTTTGCAACCCGTTCATGACGTGGAATCAATTGTGGCGAGAATGAGAATACTTCGGTGGCAACGTTGAGAGATGTACAGAGAAGACGTTCTTGTAGTTCGGCGTTTCGGTTCCAATCATCTTTATTTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14199</snp_id>
        <super_contig>c007800845.Contig2</super_contig>
        <contig_pos>75702</contig_pos>
        <strand>+</strand>
        <context>TTATTTTTTG[C/T]TGAGGCAATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGCACGAGCAACTTGACACCGGTAACATCATCATGCAATTTATTTTTTG</left_flank>
        <right_flank>TGAGGCAATGTGTGTTCTTTATCGAGCTTCTAACGAAAAACTCGCTGCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAGTGGCCTGTGCAAATTTTCGGGCCACTCCAGTATGGAAAGAGCCAGGGAATTGTATAAAGAGCACCGTGCTGCAAAAGGGAAAATTCACCGAGAAGCTTTCAATGGACTTATCGGATCGTCAAGCTTCTCTGTAGCAAAGAAACTTATTCAGGAAATGGCTGCTCAGAAAATTTCACCGGATGTTTTCACTTTCAATTCTCTACTCACGGCCGCCACAAAAGCTCCAAAGTTTGAAGATCGTATGAAAGCCTACACGGAAGTCATTGGAGAGATGAAAGCAATCGGAGTGGAACCAGCTCTCTCGAGTTATTATATCATCATCAAAAACCTTGTGGATTCTAAAATTTTGGAAAACGAAAAGCGAGATAACGAAGAGCAGAATGCAGCCTTCAAACGACAGTTGACAGTTGCTGTATCCTGGTTGGATGAGATTCTGAATAGAATAAGCACGAGCAACTTGACACCGGTAACATCATCATGCAATTTATTTTTTGCTGAGGCAATGTGTGTTCTTTATCGAGCTTCTAACGAAAAACTCGCTGCAAAACTTCTCTCCATCTACGAGTCCAAATCTAACGAAGTGAAAATGCCATCATTCACCATTGAATCAATCTTTTATAACCGCTATTTGCAATTAGTCATCGAACAGACAACTTCATTGAACAAGATTTATGATTTGTATACGTCAATGGTTCCAAGACTAGTTGGTGTTAACAATTCCTTGAGCTCTCTCATTTACCGGAAACTTTCGGTGTCATCTGATAGCCATTGGCCACTTCTTCGAAGAGTTATCATTGATGGAATCACTGCTGGCCAGATCATCAACGGAGTTTTGGGAGAGGAAATGCGTAAAAAATTGAGCGATGTTCAGCTGCATGTATGTTTCATGAAATCCATAATACTCCAAAGACACTTTTTGTTTTCAGACGTTGGGGACAAGCGAACGCGAGCAATACACATCTCTTGTACAGAAATTGGTAGCTGTTTGGATTGAA</canonical>
            <polymorphic>ATAAGTGGCCTGTGCAAATTTTCGGGCCACTCCAGTATGGAAAGAGCCAGGGAATTGTATAAAGAGCACCGTGCTGCAAAAGGGAAAATTCACCGAGAAGCTTTCAATGGACTTATCGGATCGTCAAGCTTCTCTGTAGCAAAGAAACTTATTCAGGAAATGGCTGCTCAGAAAATTTCACCGGATGTTTTCACTTTCAATTCTCTACTCACGGCCGCCACAAAAGCTCCAAAGTTTGAAGATCGTATGAAAGCCTACACGGAAGTCATTGGAGAGATGAAAGCAATCGGAGTGGAACCAGCTCTCTCGAGTTATTATATCATCATCAAAAACCTTGTGGATTCTAAAATTTTGGAAAACGAAAAGCGAGATAACGAAGAGCAGAATGCAGCCTTCAAACGACAGTTGACAGTTGCTGTATCCTGGTTGGATGAGATTCTGAATAGAATAAGCACGAGCAACTTGACACCGGTAACATCATCATGCAATTTATTTTTTGYTGAGGCAATGTGTGTTCTTTATCGAGCTTCTAACGAAAAACTCGCTGCAAAACTTCTCTCCATCTACGAGTCCAAATCTAACGAAGTGAAAATGCCATCATTCACCATTGAATCAATCTTTTATAACCGCTATTTGCAATTAGTCATCGAACAGACAACTTCATTGAACAAGATTTATGATTTGTATACGTCAATGGTTCCAAGACTAGTTGGTGTTAACAATTCCTTGAGCTCTCTCATTTACCGGAAACTTTCGGTGTCATCTGATAGCCATTGGCCACTTCTTCGAAGAGTTATCATTGATGGAATCACTGCTGGCCAGATCATCAACGGAGTTTTGGGAGAGGAAATGCGTAAAAAATTGAGCGATGTTCAGCTGCATGTATGTTTCATGAAATCCATAATACTCCAAAGACACTTTTTGTTTTCAGACGTTGGGGACAAGCGAACGCGAGCAATACACATCTCTTGTACAGAAATTGGTAGCTGTTTGGATTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 333 167</canonical_bands>
                <polymorphic_bands>833 167</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTGGATGAGATTCTGAATAG</pcr_primer_p1>
		<pcr_primer_p2>ATCTTGTTCAATGAAGTTGTCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTTGGATGAGATTCTGAATAGAATAAGCACGAGCAACTTGACACCGGTAACATCATCATGCAATTTATTTTTTGCTGAGGCAATGTGTGTTCTTTATCGAGCTTCTAACGAAAAACTCGCTGCAAAACTTCTCTCCATCTACGAGTCCAAATCTAACGAAGTGAAAATGCCATCATTCACCATTGAATCAATCTTTTATAACCGCTATTTGCAATTAGTCATCGAACAGACAACTTCATTGAACAAGAT</canonical_amplicon>
		<polymorphic_amplicon>GGTTGGATGAGATTCTGAATAGAATAAGCACGAGCAACTTGACACCGGTAACATCATCATGCAATTTATTTTTTGYTGAGGCAATGTGTGTTCTTTATCGAGCTTCTAACGAAAAACTCGCTGCAAAACTTCTCTCCATCTACGAGTCCAAATCTAACGAAGTGAAAATGCCATCATTCACCATTGAATCAATCTTTTATAACCGCTATTTGCAATTAGTCATCGAACAGACAACTTCATTGAACAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14200</snp_id>
        <super_contig>c007800845.Contig2</super_contig>
        <contig_pos>75784</contig_pos>
        <strand>+</strand>
        <context>CCAAATCTAA[C/T]GAAGTGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACGAAAAACTCGCTGCAAAACTTCTCTCCATCTACGAGTCCAAATCTAA</left_flank>
        <right_flank>GAAGTGAAAATGCCATCATTCACCATTGAATCAATCTTTTATAACCGCTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAAATTCACCGAGAAGCTTTCAATGGACTTATCGGATCGTCAAGCTTCTCTGTAGCAAAGAAACTTATTCAGGAAATGGCTGCTCAGAAAATTTCACCGGATGTTTTCACTTTCAATTCTCTACTCACGGCCGCCACAAAAGCTCCAAAGTTTGAAGATCGTATGAAAGCCTACACGGAAGTCATTGGAGAGATGAAAGCAATCGGAGTGGAACCAGCTCTCTCGAGTTATTATATCATCATCAAAAACCTTGTGGATTCTAAAATTTTGGAAAACGAAAAGCGAGATAACGAAGAGCAGAATGCAGCCTTCAAACGACAGTTGACAGTTGCTGTATCCTGGTTGGATGAGATTCTGAATAGAATAAGCACGAGCAACTTGACACCGGTAACATCATCATGCAATTTATTTTTTGCTGAGGCAATGTGTGTTCTTTATCGAGCTTCTAACGAAAAACTCGCTGCAAAACTTCTCTCCATCTACGAGTCCAAATCTAACGAAGTGAAAATGCCATCATTCACCATTGAATCAATCTTTTATAACCGCTATTTGCAATTAGTCATCGAACAGACAACTTCATTGAACAAGATTTATGATTTGTATACGTCAATGGTTCCAAGACTAGTTGGTGTTAACAATTCCTTGAGCTCTCTCATTTACCGGAAACTTTCGGTGTCATCTGATAGCCATTGGCCACTTCTTCGAAGAGTTATCATTGATGGAATCACTGCTGGCCAGATCATCAACGGAGTTTTGGGAGAGGAAATGCGTAAAAAATTGAGCGATGTTCAGCTGCATGTATGTTTCATGAAATCCATAATACTCCAAAGACACTTTTTGTTTTCAGACGTTGGGGACAAGCGAACGCGAGCAATACACATCTCTTGTACAGAAATTGGTAGCTGTTTGGATTGAATTTAGTCAGTTCACCGAGGAAAAAATGCGACGACTTCAAAGAAAGCTGTCACCGAGTCAGGTAAATCCGCTTCGTTTTAGGT</canonical>
            <polymorphic>GGAAAATTCACCGAGAAGCTTTCAATGGACTTATCGGATCGTCAAGCTTCTCTGTAGCAAAGAAACTTATTCAGGAAATGGCTGCTCAGAAAATTTCACCGGATGTTTTCACTTTCAATTCTCTACTCACGGCCGCCACAAAAGCTCCAAAGTTTGAAGATCGTATGAAAGCCTACACGGAAGTCATTGGAGAGATGAAAGCAATCGGAGTGGAACCAGCTCTCTCGAGTTATTATATCATCATCAAAAACCTTGTGGATTCTAAAATTTTGGAAAACGAAAAGCGAGATAACGAAGAGCAGAATGCAGCCTTCAAACGACAGTTGACAGTTGCTGTATCCTGGTTGGATGAGATTCTGAATAGAATAAGCACGAGCAACTTGACACCGGTAACATCATCATGCAATTTATTTTTTGCTGAGGCAATGTGTGTTCTTTATCGAGCTTCTAACGAAAAACTCGCTGCAAAACTTCTCTCCATCTACGAGTCCAAATCTAAYGAAGTGAAAATGCCATCATTCACCATTGAATCAATCTTTTATAACCGCTATTTGCAATTAGTCATCGAACAGACAACTTCATTGAACAAGATTTATGATTTGTATACGTCAATGGTTCCAAGACTAGTTGGTGTTAACAATTCCTTGAGCTCTCTCATTTACCGGAAACTTTCGGTGTCATCTGATAGCCATTGGCCACTTCTTCGAAGAGTTATCATTGATGGAATCACTGCTGGCCAGATCATCAACGGAGTTTTGGGAGAGGAAATGCGTAAAAAATTGAGCGATGTTCAGCTGCATGTATGTTTCATGAAATCCATAATACTCCAAAGACACTTTTTGTTTTCAGACGTTGGGGACAAGCGAACGCGAGCAATACACATCTCTTGTACAGAAATTGGTAGCTGTTTGGATTGAATTTAGTCAGTTCACCGAGGAAAAAATGCGACGACTTCAAAGAAAGCTGTCACCGAGTCAGGTAAATCCGCTTCGTTTTAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTAACATCATCATGCAATTTAT</pcr_primer_p1>
		<pcr_primer_p2>TTAACACCAACTAGTCTTGGAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTAACATCATCATGCAATTTATTTTTTGCTGAGGCAATGTGTGTTCTTTATCGAGCTTCTAACGAAAAACTCGCTGCAAAACTTCTCTCCATCTACGAGTCCAAATCTAACGAAGTGAAAATGCCATCATTCACCATTGAATCAATCTTTTATAACCGCTATTTGCAATTAGTCATCGAACAGACAACTTCATTGAACAAGATTTATGATTTGTATACGTCAATGGTTCCAAGACTAGTTGGTGTTAA</canonical_amplicon>
		<polymorphic_amplicon>GGTAACATCATCATGCAATTTATTTTTTGCTGAGGCAATGTGTGTTCTTTATCGAGCTTCTAACGAAAAACTCGCTGCAAAACTTCTCTCCATCTACGAGTCCAAATCTAAYGAAGTGAAAATGCCATCATTCACCATTGAATCAATCTTTTATAACCGCTATTTGCAATTAGTCATCGAACAGACAACTTCATTGAACAAGATTTATGATTTGTATACGTCAATGGTTCCAAGACTAGTTGGTGTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14201</snp_id>
        <super_contig>c007800845.Contig2</super_contig>
        <contig_pos>75808</contig_pos>
        <strand>+</strand>
        <context>CATCATTCAC[C/T]ATTGAATCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCTCCATCTACGAGTCCAAATCTAACGAAGTGAAAATGCCATCATTCAC</left_flank>
        <right_flank>ATTGAATCAATCTTTTATAACCGCTATTTGCAATTAGTCATCGAACAGAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGACTTATCGGATCGTCAAGCTTCTCTGTAGCAAAGAAACTTATTCAGGAAATGGCTGCTCAGAAAATTTCACCGGATGTTTTCACTTTCAATTCTCTACTCACGGCCGCCACAAAAGCTCCAAAGTTTGAAGATCGTATGAAAGCCTACACGGAAGTCATTGGAGAGATGAAAGCAATCGGAGTGGAACCAGCTCTCTCGAGTTATTATATCATCATCAAAAACCTTGTGGATTCTAAAATTTTGGAAAACGAAAAGCGAGATAACGAAGAGCAGAATGCAGCCTTCAAACGACAGTTGACAGTTGCTGTATCCTGGTTGGATGAGATTCTGAATAGAATAAGCACGAGCAACTTGACACCGGTAACATCATCATGCAATTTATTTTTTGCTGAGGCAATGTGTGTTCTTTATCGAGCTTCTAACGAAAAACTCGCTGCAAAACTTCTCTCCATCTACGAGTCCAAATCTAACGAAGTGAAAATGCCATCATTCACCATTGAATCAATCTTTTATAACCGCTATTTGCAATTAGTCATCGAACAGACAACTTCATTGAACAAGATTTATGATTTGTATACGTCAATGGTTCCAAGACTAGTTGGTGTTAACAATTCCTTGAGCTCTCTCATTTACCGGAAACTTTCGGTGTCATCTGATAGCCATTGGCCACTTCTTCGAAGAGTTATCATTGATGGAATCACTGCTGGCCAGATCATCAACGGAGTTTTGGGAGAGGAAATGCGTAAAAAATTGAGCGATGTTCAGCTGCATGTATGTTTCATGAAATCCATAATACTCCAAAGACACTTTTTGTTTTCAGACGTTGGGGACAAGCGAACGCGAGCAATACACATCTCTTGTACAGAAATTGGTAGCTGTTTGGATTGAATTTAGTCAGTTCACCGAGGAAAAAATGCGACGACTTCAAAGAAAGCTGTCACCGAGTCAGGTAAATCCGCTTCGTTTTAGGTAGATTTTTATTTCTCTTTTTTTCA</canonical>
            <polymorphic>ATGGACTTATCGGATCGTCAAGCTTCTCTGTAGCAAAGAAACTTATTCAGGAAATGGCTGCTCAGAAAATTTCACCGGATGTTTTCACTTTCAATTCTCTACTCACGGCCGCCACAAAAGCTCCAAAGTTTGAAGATCGTATGAAAGCCTACACGGAAGTCATTGGAGAGATGAAAGCAATCGGAGTGGAACCAGCTCTCTCGAGTTATTATATCATCATCAAAAACCTTGTGGATTCTAAAATTTTGGAAAACGAAAAGCGAGATAACGAAGAGCAGAATGCAGCCTTCAAACGACAGTTGACAGTTGCTGTATCCTGGTTGGATGAGATTCTGAATAGAATAAGCACGAGCAACTTGACACCGGTAACATCATCATGCAATTTATTTTTTGCTGAGGCAATGTGTGTTCTTTATCGAGCTTCTAACGAAAAACTCGCTGCAAAACTTCTCTCCATCTACGAGTCCAAATCTAACGAAGTGAAAATGCCATCATTCACYATTGAATCAATCTTTTATAACCGCTATTTGCAATTAGTCATCGAACAGACAACTTCATTGAACAAGATTTATGATTTGTATACGTCAATGGTTCCAAGACTAGTTGGTGTTAACAATTCCTTGAGCTCTCTCATTTACCGGAAACTTTCGGTGTCATCTGATAGCCATTGGCCACTTCTTCGAAGAGTTATCATTGATGGAATCACTGCTGGCCAGATCATCAACGGAGTTTTGGGAGAGGAAATGCGTAAAAAATTGAGCGATGTTCAGCTGCATGTATGTTTCATGAAATCCATAATACTCCAAAGACACTTTTTGTTTTCAGACGTTGGGGACAAGCGAACGCGAGCAATACACATCTCTTGTACAGAAATTGGTAGCTGTTTGGATTGAATTTAGTCAGTTCACCGAGGAAAAAATGCGACGACTTCAAAGAAAGCTGTCACCGAGTCAGGTAAATCCGCTTCGTTTTAGGTAGATTTTTATTTCTCTTTTTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTAACATCATCATGCAATTTAT</pcr_primer_p1>
		<pcr_primer_p2>TTAACACCAACTAGTCTTGGAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTAACATCATCATGCAATTTATTTTTTGCTGAGGCAATGTGTGTTCTTTATCGAGCTTCTAACGAAAAACTCGCTGCAAAACTTCTCTCCATCTACGAGTCCAAATCTAACGAAGTGAAAATGCCATCATTCACCATTGAATCAATCTTTTATAACCGCTATTTGCAATTAGTCATCGAACAGACAACTTCATTGAACAAGATTTATGATTTGTATACGTCAATGGTTCCAAGACTAGTTGGTGTTAA</canonical_amplicon>
		<polymorphic_amplicon>GGTAACATCATCATGCAATTTATTTTTTGCTGAGGCAATGTGTGTTCTTTATCGAGCTTCTAACGAAAAACTCGCTGCAAAACTTCTCTCCATCTACGAGTCCAAATCTAACGAAGTGAAAATGCCATCATTCACYATTGAATCAATCTTTTATAACCGCTATTTGCAATTAGTCATCGAACAGACAACTTCATTGAACAAGATTTATGATTTGTATACGTCAATGGTTCCAAGACTAGTTGGTGTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14202</snp_id>
        <super_contig>c007800845.Contig2</super_contig>
        <contig_pos>77597</contig_pos>
        <strand></strand>
        <context>AKTTCTCCCA[A/G]TTTTGAACGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAATTTTCCCTACCTTGTTTTTTTTTAAATTTTCCCACAGTTCTCCCA</left_flank>
        <right_flank>TTTTGAACGCTCTGAGGGCGCGTATGCAAAAATTTTTCAACGAATTTTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGAAAAACCGAACTTAATTGCGAAAGCAGCTCGAACGAGCCAAAAGTCTGAAATATTACGTTTTTGCCGCACTTTTTCGTAGATCAAAAAAGCGACGCCTTTCAATTTCTCAGGTCCCACTTTTTTTTAATTCGGCACGCTCTTCCACAGAACATTTCCGAACTGCAAATTGATTTTTGATCTACAGAAAAAAGTTNNNNNNNNNNGGTAAGGAGTCGAACTGTCCCAAATTGGAACGCTGCCTGCAACAGCGCGCATGAAAGCACACACAAAACAGCATTGAATCTGTTCGATTTTAGGTCTGTTCGAATTTGAAAACGTTCGAATTCGTCGTACCCCCGGAGAGCGTGTTCGGCAATAAACGAGGCTCAAAAAAAATTTAAAGGCGCATGCAGTTGTTTATCCGAGTGCGTCTCGTAGCGGTATTGCGGCCTACCGTAGCCGCTGTTGAATTTTCCCTACCTTGTTTTTTTTTAAATTTTCCCACAGTTCTCCCAATTTTGAACGCTCTGAGGGCGCGTATGCAAAAATTTTTCAACGAATTTTTGTTTGAACATTCCTTAAGGAAATTTCTGATGGTCAGAAAATATTTGTGTGCTAAATAATTCTCATTTTTAGCCCAGCTATCACAAATACGCACTCAAAAATTTTAGGCTCATAAAACCATTTTCCAGACTCCGAAAAGTGGTTTTTTTCACTTTAGCATGCGGACTCAAATTTTTGTAGCGTAGCAATTACTTCTTTTTTCACCTTCGCTGCGTTTTTTCATGAGATACTTATTTAATTTTGTGCTTTGTTCACTTTTGTTGCACATCAGAAATATTACTTTCTTTCAATAGTTTCAGACACTCGACGTCGGAGATGCCCGCCACACCACTACCGCCGGCACCGATGCCTCCTGTAACAGCTCCACCCGGTCCCATGCCACCACCGCCACTTCCACCAGCCCCAGGTCCAGTTTTGCCCATCACATCGGCTCACAAGACAGCTAATGATGC</canonical>
            <polymorphic>ATCGAAAAACCGAACTTAATTGCGAAAGCAGCTCGAACGAGCCAAAAGTCTGAAATATTACGTTTTTGCCGCACTTTTTCGTAGATCAAAAAAGCGACGCCTTTCAATTTCTCAGGTCCCACTTTTTTTTAATTCGGCACGCTCTTCCACAGAACATTTCCGAACTGCAAATTGATTTTTGATCTACAGAAAAAAGTTNNNNNNNNNNGGTAAGGAGTCGAACTGTCCCAAATTGGAACGCTGCCTGCAACAGCGCGCATGAAAGCACACACAAAACAGCATTGAATCTGTTCGATTTTAGGTCTGTTCGAATTTGAAAACGTTCGAATTCGTCGTACCCCCGGAGAGCGTGTTCGGCAATAAACGAGGCTCAAAAAAAATTTAAAGGCGCATGCAGTTGTTTATCCGAGTGCGTCTCGTAGCGGTATTGCGGCCTACCGTAGCCGCTGTTGAATTTTCCCTACCTTGTTTTTTTTTAAATTTTCCCACAGTTCTCCCARTTTTGAACGCTCTGAGGGCGCGTATGCAAAAATTTTTCAACGAATTTTTGTTTGAACATTCCTTAAGGAAATTTCTGATGGTCAGAAAATATTTGTGTGCTAAATAATTCTCATTTTTAGCCCAGCTATCACAAATACGCACTCAAAAATTTTAGGCTCATAAAACCATTTTCCAGACTCCGAAAAGTGGTTTTTTTCACTTTAGCATGCGGACTCAAATTTTTGTAGCGTAGCAATTACTTCTTTTTTCACCTTCGCTGCGTTTTTTCATGAGATACTTATTTAATTTTGTGCTTTGTTCACTTTTGTTGCACATCAGAAATATTACTTTCTTTCAATAGTTTCAGACACTCGACGTCGGAGATGCCCGCCACACCACTACCGCCGGCACCGATGCCTCCTGTAACAGCTCCACCCGGTCCCATGCCACCACCGCCACTTCCACCAGCCCCAGGTCCAGTTTTGCCCATCACATCGGCTCACAAGACAGCTAATGATGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>216 88 80 74 70 61 52 50 42 39 36 32 27 26 25 20 17 17 16 12</canonical_bands>
                <polymorphic_bands>216 88 80 74 70 61 52 52 50 42 39 36 27 26 25 17 17 16 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATAAACGAGGCTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTAAGGAATGTTCAAACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>210</pcr_amplicon_size>
		<canonical_amplicon>CAATAAACGAGGCTCAAAAAAAATTTAAAGGCGCATGCAGTTGTTTATCCGAGTGCGTCTCGTAGCGGTATTGCGGCCTACCGTAGCCGCTGTTGAATTTTCCCTACCTTGTTTTTTTTTAAATTTTCCCACAGTTCTCCCAATTTTGAACGCTCTGAGGGCGCGTATGCAAAAATTTTTCAACGAATTTTTGTTTGAACATTCCTTAAG</canonical_amplicon>
		<polymorphic_amplicon>CAATAAACGAGGCTCAAAAAAAATTTAAAGGCGCATGCAGTTGTTTATCCGAGTGCGTCTCGTAGCGGTATTGCGGCCTACCGTAGCCGCTGTTGAATTTTCCCTACCTTGTTTTTTTTTAAATTTTCCCACAGTTCTCCCARTTTTGAACGCTCTGAGGGCGCGTATGCAAAAATTTTTCAACGAATTTTTGTTTGAACATTCCTTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14203</snp_id>
        <super_contig>c007800845.Contig2</super_contig>
        <contig_pos>77588</contig_pos>
        <strand></strand>
        <context>TTTTCCCACA[G/T]TTCTCCCART</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAGCCGCTGTTGAATTTTCCCTACCTTGTTTTTTTTTAAATTTTCCCACA</left_flank>
        <right_flank>TTCTCCCAATTTTGAACGCTCTGAGGGCGCGTATGCAAAAATTTTTCAAC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTTTTTCATCGAAAAACCGAACTTAATTGCGAAAGCAGCTCGAACGAGCCAAAAGTCTGAAATATTACGTTTTTGCCGCACTTTTTCGTAGATCAAAAAAGCGACGCCTTTCAATTTCTCAGGTCCCACTTTTTTTTAATTCGGCACGCTCTTCCACAGAACATTTCCGAACTGCAAATTGATTTTTGATCTACAGAAAAAAGTTNNNNNNNNNNGGTAAGGAGTCGAACTGTCCCAAATTGGAACGCTGCCTGCAACAGCGCGCATGAAAGCACACACAAAACAGCATTGAATCTGTTCGATTTTAGGTCTGTTCGAATTTGAAAACGTTCGAATTCGTCGTACCCCCGGAGAGCGTGTTCGGCAATAAACGAGGCTCAAAAAAAATTTAAAGGCGCATGCAGTTGTTTATCCGAGTGCGTCTCGTAGCGGTATTGCGGCCTACCGTAGCCGCTGTTGAATTTTCCCTACCTTGTTTTTTTTTAAATTTTCCCACAGTTCTCCCAATTTTGAACGCTCTGAGGGCGCGTATGCAAAAATTTTTCAACGAATTTTTGTTTGAACATTCCTTAAGGAAATTTCTGATGGTCAGAAAATATTTGTGTGCTAAATAATTCTCATTTTTAGCCCAGCTATCACAAATACGCACTCAAAAATTTTAGGCTCATAAAACCATTTTCCAGACTCCGAAAAGTGGTTTTTTTCACTTTAGCATGCGGACTCAAATTTTTGTAGCGTAGCAATTACTTCTTTTTTCACCTTCGCTGCGTTTTTTCATGAGATACTTATTTAATTTTGTGCTTTGTTCACTTTTGTTGCACATCAGAAATATTACTTTCTTTCAATAGTTTCAGACACTCGACGTCGGAGATGCCCGCCACACCACTACCGCCGGCACCGATGCCTCCTGTAACAGCTCCACCCGGTCCCATGCCACCACCGCCACTTCCACCAGCCCCAGGTCCAGTTTTGCCCATCACATCGGCTCACAAGACAGC</canonical>
            <polymorphic>CTGTTTTTCATCGAAAAACCGAACTTAATTGCGAAAGCAGCTCGAACGAGCCAAAAGTCTGAAATATTACGTTTTTGCCGCACTTTTTCGTAGATCAAAAAAGCGACGCCTTTCAATTTCTCAGGTCCCACTTTTTTTTAATTCGGCACGCTCTTCCACAGAACATTTCCGAACTGCAAATTGATTTTTGATCTACAGAAAAAAGTTNNNNNNNNNNGGTAAGGAGTCGAACTGTCCCAAATTGGAACGCTGCCTGCAACAGCGCGCATGAAAGCACACACAAAACAGCATTGAATCTGTTCGATTTTAGGTCTGTTCGAATTTGAAAACGTTCGAATTCGTCGTACCCCCGGAGAGCGTGTTCGGCAATAAACGAGGCTCAAAAAAAATTTAAAGGCGCATGCAGTTGTTTATCCGAGTGCGTCTCGTAGCGGTATTGCGGCCTACCGTAGCCGCTGTTGAATTTTCCCTACCTTGTTTTTTTTTAAATTTTCCCACAKTTCTCCCAATTTTGAACGCTCTGAGGGCGCGTATGCAAAAATTTTTCAACGAATTTTTGTTTGAACATTCCTTAAGGAAATTTCTGATGGTCAGAAAATATTTGTGTGCTAAATAATTCTCATTTTTAGCCCAGCTATCACAAATACGCACTCAAAAATTTTAGGCTCATAAAACCATTTTCCAGACTCCGAAAAGTGGTTTTTTTCACTTTAGCATGCGGACTCAAATTTTTGTAGCGTAGCAATTACTTCTTTTTTCACCTTCGCTGCGTTTTTTCATGAGATACTTATTTAATTTTGTGCTTTGTTCACTTTTGTTGCACATCAGAAATATTACTTTCTTTCAATAGTTTCAGACACTCGACGTCGGAGATGCCCGCCACACCACTACCGCCGGCACCGATGCCTCCTGTAACAGCTCCACCCGGTCCCATGCCACCACCGCCACTTCCACCAGCCCCAGGTCCAGTTTTGCCCATCACATCGGCTCACAAGACAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 233 215 51</canonical_bands>
                <polymorphic_bands>552 233 215</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATAAACGAGGCTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTAAGGAATGTTCAAACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>210</pcr_amplicon_size>
		<canonical_amplicon>CAATAAACGAGGCTCAAAAAAAATTTAAAGGCGCATGCAGTTGTTTATCCGAGTGCGTCTCGTAGCGGTATTGCGGCCTACCGTAGCCGCTGTTGAATTTTCCCTACCTTGTTTTTTTTTAAATTTTCCCACAGTTCTCCCAATTTTGAACGCTCTGAGGGCGCGTATGCAAAAATTTTTCAACGAATTTTTGTTTGAACATTCCTTAAG</canonical_amplicon>
		<polymorphic_amplicon>CAATAAACGAGGCTCAAAAAAAATTTAAAGGCGCATGCAGTTGTTTATCCGAGTGCGTCTCGTAGCGGTATTGCGGCCTACCGTAGCCGCTGTTGAATTTTCCCTACCTTGTTTTTTTTTAAATTTTCCCACAKTTCTCCCAATTTTGAACGCTCTGAGGGCGCGTATGCAAAAATTTTTCAACGAATTTTTGTTTGAACATTCCTTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14214</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>11724</contig_pos>
        <strand>+</strand>
        <context>CAGAAGGCAC[A/T]AAGCAGTTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTTCCATTGCATATTATTTTCAGATCGGTATATTCAACTCAGAAGGCAC</left_flank>
        <right_flank>AAGCAGTTGTAAATCCATGAATGCTTGCAGGGTTCCCTTCTTGCCACACT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAGAACATTGCCAAGTAAGTTTGGAACCTACAAACTACCCTACAAAAGTACCAAAATCATCATTTCAAAAACCGGTTGGGTACTAAATATGAAAGACGAGATTGATAAAAAAATGTTTGTGACTTCGTAGACAAGACACACTTCAAAGTGCAAAAAACGGGAAAATAGATAAAATACAAAAAACGATAAAATATCAAAAATCTAATTTCAGACAAGAGCCAGCCGCGATGAACCTGATGACGTTCTCCACGTTCTTGTTCATCTCATCCATTGGACTCGTATTCACATCGAAATTCTTCACAGTAAAAAATCAAATTCCATTGGAGTGAGAATCTCGAAAACTTATTTTACACACACTCCTAAATCTTTCAGAGGCTATTTCAAAACTGTAAGCATGTTCTTCATCGTTAACGTCGTCAATAATCAGGCTCTCAATTTCCATGTGCCGGTTCCATTGCATATTATTTTCAGATCGGTATATTCAACTCAGAAGGCACAAAGCAGTTGTAAATCCATGAATGCTTGCAGGGTTCCCTTCTTGCCACACTGATTCTCTCCGTTGTTATTGTCGGGAAAAGTTACTCGGCTCGCAAGTACATCTCCGTATTTGCCATTACCGTTGGAATCGTCATCTGCACACTTGCCACGTCATCTCAAGGAGATTCAGGGCTTTCGATGGAAGAAGCATCGAAACACTATAAAGAGTGGTCTATTGGAATTGCAATGCTTACTTTCGCTCTTTTAGCTTCGGCATACTTGGCTATTTGCCAGCAACAAATGTACGAGAAATACGGAAAACATCCCGATGAGGCAATGTTCATTACGGTTATCCCATAATCTGTTGAATTACGAAGAAATATATATTTTCAGCACTTTGTGTCTCTCCCATTCTTCCTTGTCATGGGCGGTGACATAGTCTCAGCTTCAACCAAGCTTAGCGCAAGTGCACCATATGCTTTGATTCCCGGAGTTCCTTCTCTTTGGGTTGACTTGTTTGC</canonical>
            <polymorphic>TGGAGAACATTGCCAAGTAAGTTTGGAACCTACAAACTACCCTACAAAAGTACCAAAATCATCATTTCAAAAACCGGTTGGGTACTAAATATGAAAGACGAGATTGATAAAAAAATGTTTGTGACTTCGTAGACAAGACACACTTCAAAGTGCAAAAAACGGGAAAATAGATAAAATACAAAAAACGATAAAATATCAAAAATCTAATTTCAGACAAGAGCCAGCCGCGATGAACCTGATGACGTTCTCCACGTTCTTGTTCATCTCATCCATTGGACTCGTATTCACATCGAAATTCTTCACAGTAAAAAATCAAATTCCATTGGAGTGAGAATCTCGAAAACTTATTTTACACACACTCCTAAATCTTTCAGAGGCTATTTCAAAACTGTAAGCATGTTCTTCATCGTTAACGTCGTCAATAATCAGGCTCTCAATTTCCATGTGCCGGTTCCATTGCATATTATTTTCAGATCGGTATATTCAACTCAGAAGGCACWAAGCAGTTGTAAATCCATGAATGCTTGCAGGGTTCCCTTCTTGCCACACTGATTCTCTCCGTTGTTATTGTCGGGAAAAGTTACTCGGCTCGCAAGTACATCTCCGTATTTGCCATTACCGTTGGAATCGTCATCTGCACACTTGCCACGTCATCTCAAGGAGATTCAGGGCTTTCGATGGAAGAAGCATCGAAACACTATAAAGAGTGGTCTATTGGAATTGCAATGCTTACTTTCGCTCTTTTAGCTTCGGCATACTTGGCTATTTGCCAGCAACAAATGTACGAGAAATACGGAAAACATCCCGATGAGGCAATGTTCATTACGGTTATCCCATAATCTGTTGAATTACGAAGAAATATATATTTTCAGCACTTTGTGTCTCTCCCATTCTTCCTTGTCATGGGCGGTGACATAGTCTCAGCTTCAACCAAGCTTAGCGCAAGTGCACCATATGCTTTGATTCCCGGAGTTCCTTCTCTTTGGGTTGACTTGTTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGAAAACTTATTTTACACACACT</pcr_primer_p1>
		<pcr_primer_p2>GAGTAACTTTTCCCGACAATAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCGAAAACTTATTTTACACACACTCCTAAATCTTTCAGAGGCTATTTCAAAACTGTAAGCATGTTCTTCATCGTTAACGTCGTCAATAATCAGGCTCTCAATTTCCATGTGCCGGTTCCATTGCATATTATTTTCAGATCGGTATATTCAACTCAGAAGGCACAAAGCAGTTGTAAATCCATGAATGCTTGCAGGGTTCCCTTCTTGCCACACTGATTCTCTCCGTTGTTATTGTCGGGAAAAGTTACTC</canonical_amplicon>
		<polymorphic_amplicon>TCGAAAACTTATTTTACACACACTCCTAAATCTTTCAGAGGCTATTTCAAAACTGTAAGCATGTTCTTCATCGTTAACGTCGTCAATAATCAGGCTCTCAATTTCCATGTGCCGGTTCCATTGCATATTATTTTCAGATCGGTATATTCAACTCAGAAGGCACWAAGCAGTTGTAAATCCATGAATGCTTGCAGGGTTCCCTTCTTGCCACACTGATTCTCTCCGTTGTTATTGTCGGGAAAAGTTACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14215</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>12054</contig_pos>
        <strand>+</strand>
        <context>TCATTACGGT[A/T]ATCCCATAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGTACGAGAAATACGGAAAACATCCCGATGAGGCAATGTTCATTACGGT</left_flank>
        <right_flank>ATCCCATAATCTGTTGAATTACGAAGAAATATATATTTTCAGCACTTTGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATCTCGAAAACTTATTTTACACACACTCCTAAATCTTTCAGAGGCTATTTCAAAACTGTAAGCATGTTCTTCATCGTTAACGTCGTCAATAATCAGGCTCTCAATTTCCATGTGCCGGTTCCATTGCATATTATTTTCAGATCGGTATATTCAACTCAGAAGGCACAAAGCAGTTGTAAATCCATGAATGCTTGCAGGGTTCCCTTCTTGCCACACTGATTCTCTCCGTTGTTATTGTCGGGAAAAGTTACTCGGCTCGCAAGTACATCTCCGTATTTGCCATTACCGTTGGAATCGTCATCTGCACACTTGCCACGTCATCTCAAGGAGATTCAGGGCTTTCGATGGAAGAAGCATCGAAACACTATAAAGAGTGGTCTATTGGAATTGCAATGCTTACTTTCGCTCTTTTAGCTTCGGCATACTTGGCTATTTGCCAGCAACAAATGTACGAGAAATACGGAAAACATCCCGATGAGGCAATGTTCATTACGGTTATCCCATAATCTGTTGAATTACGAAGAAATATATATTTTCAGCACTTTGTGTCTCTCCCATTCTTCCTTGTCATGGGCGGTGACATAGTCTCAGCTTCAACCAAGCTTAGCGCAAGTGCACCATATGCTTTGATTCCCGGAGTTCCTTCTCTTTGGGTTGACTTGTTTGCTAGTTGTGTTCTTCAGTGAGTGTTCAATAGCTTCATCTAAAATCGAATCCAATTTTTTCCAGGTACGGATGCATCAAGTATGTTTACCAACTGAATTCTCGTGTTGATTCACTGACGGTCACACTTGTCGTCACACTTCGTAAATTCCTCTCACTGATTGTTTCGATTGTTTATTTCAAAAATCCATTCACAGGTAAATTTTCAACTCAATCAGAACCTCGATAAATAATAATTTCCACTTTTCAGCTCAACACTGGGTTGGAGCATTGCTCGTGTTCGCTGGAACCCTTGCATTCGCTGATATCTGGGGAGGACAACCAGCCAAAAAAC</canonical>
            <polymorphic>AGAATCTCGAAAACTTATTTTACACACACTCCTAAATCTTTCAGAGGCTATTTCAAAACTGTAAGCATGTTCTTCATCGTTAACGTCGTCAATAATCAGGCTCTCAATTTCCATGTGCCGGTTCCATTGCATATTATTTTCAGATCGGTATATTCAACTCAGAAGGCACAAAGCAGTTGTAAATCCATGAATGCTTGCAGGGTTCCCTTCTTGCCACACTGATTCTCTCCGTTGTTATTGTCGGGAAAAGTTACTCGGCTCGCAAGTACATCTCCGTATTTGCCATTACCGTTGGAATCGTCATCTGCACACTTGCCACGTCATCTCAAGGAGATTCAGGGCTTTCGATGGAAGAAGCATCGAAACACTATAAAGAGTGGTCTATTGGAATTGCAATGCTTACTTTCGCTCTTTTAGCTTCGGCATACTTGGCTATTTGCCAGCAACAAATGTACGAGAAATACGGAAAACATCCCGATGAGGCAATGTTCATTACGGTWATCCCATAATCTGTTGAATTACGAAGAAATATATATTTTCAGCACTTTGTGTCTCTCCCATTCTTCCTTGTCATGGGCGGTGACATAGTCTCAGCTTCAACCAAGCTTAGCGCAAGTGCACCATATGCTTTGATTCCCGGAGTTCCTTCTCTTTGGGTTGACTTGTTTGCTAGTTGTGTTCTTCAGTGAGTGTTCAATAGCTTCATCTAAAATCGAATCCAATTTTTTCCAGGTACGGATGCATCAAGTATGTTTACCAACTGAATTCTCGTGTTGATTCACTGACGGTCACACTTGTCGTCACACTTCGTAAATTCCTCTCACTGATTGTTTCGATTGTTTATTTCAAAAATCCATTCACAGGTAAATTTTCAACTCAATCAGAACCTCGATAAATAATAATTTCCACTTTTCAGCTCAACACTGGGTTGGAGCATTGCTCGTGTTCGCTGGAACCCTTGCATTCGCTGATATCTGGGGAGGACAACCAGCCAAAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCAACAAATGTACGAGAAATAC</pcr_primer_p1>
		<pcr_primer_p2>ACTCACTGAAGAACACAACTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCAACAAATGTACGAGAAATACGGAAAACATCCCGATGAGGCAATGTTCATTACGGTTATCCCATAATCTGTTGAATTACGAAGAAATATATATTTTCAGCACTTTGTGTCTCTCCCATTCTTCCTTGTCATGGGCGGTGACATAGTCTCAGCTTCAACCAAGCTTAGCGCAAGTGCACCATATGCTTTGATTCCCGGAGTTCCTTCTCTTTGGGTTGACTTGTTTGCTAGTTGTGTTCTTCAGTGAGT</canonical_amplicon>
		<polymorphic_amplicon>AGCAACAAATGTACGAGAAATACGGAAAACATCCCGATGAGGCAATGTTCATTACGGTWATCCCATAATCTGTTGAATTACGAAGAAATATATATTTTCAGCACTTTGTGTCTCTCCCATTCTTCCTTGTCATGGGCGGTGACATAGTCTCAGCTTCAACCAAGCTTAGCGCAAGTGCACCATATGCTTTGATTCCCGGAGTTCCTTCTCTTTGGGTTGACTTGTTTGCTAGTTGTGTTCTTCAGTGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14216</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>15042</contig_pos>
        <strand>+</strand>
        <context>CGTTCATCGT[A/G]TMACCAGCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGTTGTTTTCAATTATCAAAGCAGCGTCTTGACGTTTTCCGTTCATCGT</left_flank>
        <right_flank>TAACCAGCAAACCCTAGTTTCTGAAGAGATGGAAGACCGAATTCTAGGAA</right_flank>
        <qual_score>145</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTCGGCAGCTAGAGTGGCATCTCTCATTTTCACTAAACAATCGATCATCTCCTGTTCCTTTTTCTGTTAAAAATATAACATTTTATAAGGTGGGAATTTCAATTTAACCTTAACACGACTTTCGTTGACTTCTAGCATAATAAAATGATGTGTGAACACAACAATTATCATGAATCCAAACAAACAATACGGCCAGAGCTCATACAGAAGATGACGGACATATATTTCTGAAATTCAAGATTAGTTGAAAGCCATAATTTCTGAAACTGGATACCTTGTGGAAACTCAAATTGGTCAAAATCAGTACTCCCATTAGATGCTACTTTCAAAATCTCGTATTGTTTCTCATCGATTTTGATTCTTGGATTCCCTCGGATTATTGCATACTTCTGATCCTCATGCTTCACAATTTGACTCACTCTTCTCAATCTCAAATGCATCAAGTATGGGTTGTTTTCAATTATCAAAGCAGCGTCTTGACGTTTTCCGTTCATCGTATAACCAGCAAACCCTAGTTTCTGAAGAGATGGAAGACCGAATTCTAGGAACGTCGTGTTTCGGAGAACGAGACTTCCTTGGATTTCTCGAAGATCAAGTAGGGACTGAAAACAAGGTAAGGATGAGAGCTTTCTGAAGAAATGTTCTGAAGAAGATCACCTGGAAAATTAATGCATCGTCATTCTTCTCTAAAATGACATCTCCTTTTATATATGCACAATCTGAAGTGGTTCTTTGGAACATCTTCTTTTCCGACCATAAACAACATGCTGAAGAATTGAAGTTTGCAGAACTTTTCAAAGCGATTCCACACCTGGCCACCGATATTTCTCATCACAATTTTCCCAGTCAATGTTGAAATCTCTTATTGACTTCCGATAATTGTCTGAATTTGGTTTTCCAGGTCAAATCAAAAATTTTAAAAATCGAACTTTGCCTATACAAATCTTGTGCTTCAAACATCAAACGGAATATTTCTTCTTCGTCTTCCCGGGTAGGAA</canonical>
            <polymorphic>AACTCGGCAGCTAGAGTGGCATCTCTCATTTTCACTAAACAATCGATCATCTCCTGTTCCTTTTTCTGTTAAAAATATAACATTTTATAAGGTGGGAATTTCAATTTAACCTTAACACGACTTTCGTTGACTTCTAGCATAATAAAATGATGTGTGAACACAACAATTATCATGAATCCAAACAAACAATACGGCCAGAGCTCATACAGAAGATGACGGACATATATTTCTGAAATTCAAGATTAGTTGAAAGCCATAATTTCTGAAACTGGATACCTTGTGGAAACTCAAATTGGTCAAAATCAGTACTCCCATTAGATGCTACTTTCAAAATCTCGTATTGTTTCTCATCGATTTTGATTCTTGGATTCCCTCGGATTATTGCATACTTCTGATCCTCATGCTTCACAATTTGACTCACTCTTCTCAATCTCAAATGCATCAAGTATGGGTTGTTTTCAATTATCAAAGCAGCGTCTTGACGTTTTCCGTTCATCGTRTAACCAGCAAACCCTAGTTTCTGAAGAGATGGAAGACCGAATTCTAGGAACGTCGTGTTTCGGAGAACGAGACTTCCTTGGATTTCTCGAAGATCAAGTAGGGACTGAAAACAAGGTAAGGATGAGAGCTTTCTGAAGAAATGTTCTGAAGAAGATCACCTGGAAAATTAATGCATCGTCATTCTTCTCTAAAATGACATCTCCTTTTATATATGCACAATCTGAAGTGGTTCTTTGGAACATCTTCTTTTCCGACCATAAACAACATGCTGAAGAATTGAAGTTTGCAGAACTTTTCAAAGCGATTCCACACCTGGCCACCGATATTTCTCATCACAATTTTCCCAGTCAATGTTGAAATCTCTTATTGACTTCCGATAATTGTCTGAATTTGGTTTTCCAGGTCAAATCAAAAATTTTAAAAATCGAACTTTGCCTATACAAATCTTGTGCTTCAAACATCAAACGGAATATTTCTTCTTCGTCTTCCCGGGTAGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATGGGTTGTTTTCAATTATCA</pcr_primer_p1>
		<pcr_primer_p2>TCATTTTAGAGAAGAATGACGAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GTATGGGTTGTTTTCAATTATCAAAGCAGCGTCTTGACGTTTTCCGTTCATCGTATAACCAGCAAACCCTAGTTTCTGAAGAGATGGAAGACCGAATTCTAGGAACGTCGTGTTTCGGAGAACGAGACTTCCTTGGATTTCTCGAAGATCAAGTAGGGACTGAAAACAAGGTAAGGATGAGAGCTTTCTGAAGAAATGTTCTGAAGAAGATCACCTGGAAAATTAATGCATCGTCATTCTTCTCTAAAATGA</canonical_amplicon>
		<polymorphic_amplicon>GTATGGGTTGTTTTCAATTATCAAAGCAGCGTCTTGACGTTTTCCGTTCATCGTRTAACCAGCAAACCCTAGTTTCTGAAGAGATGGAAGACCGAATTCTAGGAACGTCGTGTTTCGGAGAACGAGACTTCCTTGGATTTCTCGAAGATCAAGTAGGGACTGAAAACAAGGTAAGGATGAGAGCTTTCTGAAGAAATGTTCTGAAGAAGATCACCTGGAAAATTAATGCATCGTCATTCTTCTCTAAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14217</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>15044</contig_pos>
        <strand>+</strand>
        <context>TTCATCGTRT[A/C]ACCAGCAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTGTTTTCAATTATCAAAGCAGCGTCTTGACGTTTTCCGTTCATCGTAT</left_flank>
        <right_flank>ACCAGCAAACCCTAGTTTCTGAAGAGATGGAAGACCGAATTCTAGGAACG</right_flank>
        <qual_score>145</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGGCAGCTAGAGTGGCATCTCTCATTTTCACTAAACAATCGATCATCTCCTGTTCCTTTTTCTGTTAAAAATATAACATTTTATAAGGTGGGAATTTCAATTTAACCTTAACACGACTTTCGTTGACTTCTAGCATAATAAAATGATGTGTGAACACAACAATTATCATGAATCCAAACAAACAATACGGCCAGAGCTCATACAGAAGATGACGGACATATATTTCTGAAATTCAAGATTAGTTGAAAGCCATAATTTCTGAAACTGGATACCTTGTGGAAACTCAAATTGGTCAAAATCAGTACTCCCATTAGATGCTACTTTCAAAATCTCGTATTGTTTCTCATCGATTTTGATTCTTGGATTCCCTCGGATTATTGCATACTTCTGATCCTCATGCTTCACAATTTGACTCACTCTTCTCAATCTCAAATGCATCAAGTATGGGTTGTTTTCAATTATCAAAGCAGCGTCTTGACGTTTTCCGTTCATCGTATAACCAGCAAACCCTAGTTTCTGAAGAGATGGAAGACCGAATTCTAGGAACGTCGTGTTTCGGAGAACGAGACTTCCTTGGATTTCTCGAAGATCAAGTAGGGACTGAAAACAAGGTAAGGATGAGAGCTTTCTGAAGAAATGTTCTGAAGAAGATCACCTGGAAAATTAATGCATCGTCATTCTTCTCTAAAATGACATCTCCTTTTATATATGCACAATCTGAAGTGGTTCTTTGGAACATCTTCTTTTCCGACCATAAACAACATGCTGAAGAATTGAAGTTTGCAGAACTTTTCAAAGCGATTCCACACCTGGCCACCGATATTTCTCATCACAATTTTCCCAGTCAATGTTGAAATCTCTTATTGACTTCCGATAATTGTCTGAATTTGGTTTTCCAGGTCAAATCAAAAATTTTAAAAATCGAACTTTGCCTATACAAATCTTGTGCTTCAAACATCAAACGGAATATTTCTTCTTCGTCTTCCCGGGTAGGAAAA</canonical>
            <polymorphic>CTCGGCAGCTAGAGTGGCATCTCTCATTTTCACTAAACAATCGATCATCTCCTGTTCCTTTTTCTGTTAAAAATATAACATTTTATAAGGTGGGAATTTCAATTTAACCTTAACACGACTTTCGTTGACTTCTAGCATAATAAAATGATGTGTGAACACAACAATTATCATGAATCCAAACAAACAATACGGCCAGAGCTCATACAGAAGATGACGGACATATATTTCTGAAATTCAAGATTAGTTGAAAGCCATAATTTCTGAAACTGGATACCTTGTGGAAACTCAAATTGGTCAAAATCAGTACTCCCATTAGATGCTACTTTCAAAATCTCGTATTGTTTCTCATCGATTTTGATTCTTGGATTCCCTCGGATTATTGCATACTTCTGATCCTCATGCTTCACAATTTGACTCACTCTTCTCAATCTCAAATGCATCAAGTATGGGTTGTTTTCAATTATCAAAGCAGCGTCTTGACGTTTTCCGTTCATCGTATMACCAGCAAACCCTAGTTTCTGAAGAGATGGAAGACCGAATTCTAGGAACGTCGTGTTTCGGAGAACGAGACTTCCTTGGATTTCTCGAAGATCAAGTAGGGACTGAAAACAAGGTAAGGATGAGAGCTTTCTGAAGAAATGTTCTGAAGAAGATCACCTGGAAAATTAATGCATCGTCATTCTTCTCTAAAATGACATCTCCTTTTATATATGCACAATCTGAAGTGGTTCTTTGGAACATCTTCTTTTCCGACCATAAACAACATGCTGAAGAATTGAAGTTTGCAGAACTTTTCAAAGCGATTCCACACCTGGCCACCGATATTTCTCATCACAATTTTCCCAGTCAATGTTGAAATCTCTTATTGACTTCCGATAATTGTCTGAATTTGGTTTTCCAGGTCAAATCAAAAATTTTAAAAATCGAACTTTGCCTATACAAATCTTGTGCTTCAAACATCAAACGGAATATTTCTTCTTCGTCTTCCCGGGTAGGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATGGGTTGTTTTCAATTATCA</pcr_primer_p1>
		<pcr_primer_p2>TCATTTTAGAGAAGAATGACGAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GTATGGGTTGTTTTCAATTATCAAAGCAGCGTCTTGACGTTTTCCGTTCATCGTATAACCAGCAAACCCTAGTTTCTGAAGAGATGGAAGACCGAATTCTAGGAACGTCGTGTTTCGGAGAACGAGACTTCCTTGGATTTCTCGAAGATCAAGTAGGGACTGAAAACAAGGTAAGGATGAGAGCTTTCTGAAGAAATGTTCTGAAGAAGATCACCTGGAAAATTAATGCATCGTCATTCTTCTCTAAAATGA</canonical_amplicon>
		<polymorphic_amplicon>GTATGGGTTGTTTTCAATTATCAAAGCAGCGTCTTGACGTTTTCCGTTCATCGTATMACCAGCAAACCCTAGTTTCTGAAGAGATGGAAGACCGAATTCTAGGAACGTCGTGTTTCGGAGAACGAGACTTCCTTGGATTTCTCGAAGATCAAGTAGGGACTGAAAACAAGGTAAGGATGAGAGCTTTCTGAAGAAATGTTCTGAAGAAGATCACCTGGAAAATTAATGCATCGTCATTCTTCTCTAAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14218</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>16120</contig_pos>
        <strand>+</strand>
        <context>TTTTGTTCCC[C/G]AAATCCAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTCCTGGTTCTGTGGTATTCTCCTTCTCACATTCATCTTTTTTTGTTCCC</left_flank>
        <right_flank>AAATCCAAAGTCCCCATGTAGCATTTTTAGACTTTTCGTTGGATCTCAGT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGACATATTTATTAGAAGATTCAATTAACTGGAGAATTTTAATTAGTTTATTCAGAGAGACAGGGAGAGAGCTGAAATTCCACGAGGATCCACAGAGTTAGGGAGAATTATCGCGTGAAAGAAAAGTTCCTTATGTAGCTTCCTTTCCACATAATACTGCTCGTTTTAAAAAACCGTCTACAACCTCACATCTGAAATTTGTTTCAAAACACCAAAAAAGAGAATATAAGTATTACCCAGCATCATCCAATTTCCCTTTTTTAATATTTAGCCCACCAATCATCATATAAATACAATATTGTTTTTTGTCCAAGTTATTCGGCTCTCCATCAAACCATTTGTATCCATTCTTCTGTTGAAGCGTTTTGTCCTCGAAATCGAATCCCTGGAAAAAATGAGTTTTTTTTGTAAGTTTAAACTTGGAATTTCACATTAATTCCTTCACAAGGTCCTGGTTCTGTGGTATTCTCCTTCTCACATTCATCTTTTTTTGTTCCCGAAATCCAAAGTCCCCATGTAGCATTTTTAGACTTTTCGTTGGATCTCAGTAAAACATGGACACTTGCTGAAATTGAACTTTTCCAATCCCATTTGTAAAATTAATTACCGTTCACAAAACTATGTTCATCATCCGTCTCTAGGCCACTCAACGCTGCACCTTCTTTTCCACATAGTTTTTGTCCTTCCGTTTGATTTAATCATTTACGATGATCTAAGAATATACATTAGTGGAGATCTGCAAGTAGCCAACCTTGAGACAATACCAAACTTCTCCTCTTAGAAACATCTCGTATCCAGTTTCACAGGTTTTCAGACCAGTAGTGCCCTCCGGGCAAGTACCAACATTTTTGTCGTAGGAAGACCTATCGATTGAACCACCTAGATCGATAAGAATCGAAAAATCAAAGTAATAGTTGTAGTTGTGATTATTTTTGATCAGGGGTTTGAATCCATGACTGACCTTAATTGAAAAGCTTAAATTTCAAATAAAATTCAAAT</canonical>
            <polymorphic>GGGACATATTTATTAGAAGATTCAATTAACTGGAGAATTTTAATTAGTTTATTCAGAGAGACAGGGAGAGAGCTGAAATTCCACGAGGATCCACAGAGTTAGGGAGAATTATCGCGTGAAAGAAAAGTTCCTTATGTAGCTTCCTTTCCACATAATACTGCTCGTTTTAAAAAACCGTCTACAACCTCACATCTGAAATTTGTTTCAAAACACCAAAAAAGAGAATATAAGTATTACCCAGCATCATCCAATTTCCCTTTTTTAATATTTAGCCCACCAATCATCATATAAATACAATATTGTTTTTTGTCCAAGTTATTCGGCTCTCCATCAAACCATTTGTATCCATTCTTCTGTTGAAGCGTTTTGTCCTCGAAATCGAATCCCTGGAAAAAATGAGTTTTTTTTGTAAGTTTAAACTTGGAATTTCACATTAATTCCTTCACAAGGTCCTGGTTCTGTGGTATTCTCCTTCTCACATTCATCTTTTTTTGTTCCCSAAATCCAAAGTCCCCATGTAGCATTTTTAGACTTTTCGTTGGATCTCAGTAAAACATGGACACTTGCTGAAATTGAACTTTTCCAATCCCATTTGTAAAATTAATTACCGTTCACAAAACTATGTTCATCATCCGTCTCTAGGCCACTCAACGCTGCACCTTCTTTTCCACATAGTTTTTGTCCTTCCGTTTGATTTAATCATTTACGATGATCTAAGAATATACATTAGTGGAGATCTGCAAGTAGCCAACCTTGAGACAATACCAAACTTCTCCTCTTAGAAACATCTCGTATCCAGTTTCACAGGTTTTCAGACCAGTAGTGCCCTCCGGGCAAGTACCAACATTTTTGTCGTAGGAAGACCTATCGATTGAACCACCTAGATCGATAAGAATCGAAAAATCAAAGTAATAGTTGTAGTTGTGATTATTTTTGATCAGGGGTTTGAATCCATGACTGACCTTAATTGAAAAGCTTAAATTTCAAATAAAATTCAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATTAATTCCTTCACAAGGTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAACTATGTGGAAAAGAAGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATTAATTCCTTCACAAGGTCCTGGTTCTGTGGTATTCTCCTTCTCACATTCATCTTTTTTTGTTCCCGAAATCCAAAGTCCCCATGTAGCATTTTTAGACTTTTCGTTGGATCTCAGTAAAACATGGACACTTGCTGAAATTGAACTTTTCCAATCCCATTTGTAAAATTAATTACCGTTCACAAAACTATGTTCATCATCCGTCTCTAGGCCACTCAACGCTGCACCTTCTTTTCCACATAGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>ACATTAATTCCTTCACAAGGTCCTGGTTCTGTGGTATTCTCCTTCTCACATTCATCTTTTTTTGTTCCCSAAATCCAAAGTCCCCATGTAGCATTTTTAGACTTTTCGTTGGATCTCAGTAAAACATGGACACTTGCTGAAATTGAACTTTTCCAATCCCATTTGTAAAATTAATTACCGTTCACAAAACTATGTTCATCATCCGTCTCTAGGCCACTCAACGCTGCACCTTCTTTTCCACATAGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14219</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>17461</contig_pos>
        <strand></strand>
        <context>ATGCAGAAAT[C/A]GGAGAAGAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GTTGGATAAGCAGCAGCTCCATAAGCATAAGCATATGGATATGCAGAAAT</left_flank>
        <right_flank>GGAGAAGAATAATAGTAAGGAGAGGATACAACTTCTGGAGTGTAGACGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCGAAACAGAGAAAATTTACTAGAGACGGCATTTTTAAAACTGAAATGAAGTTCGGAGAGAAAGTGAATAGTGTTTTAGGCAAAAAGGGATCCATGGAAACATCAAGTAGTTGAATGTGTTGTCTGAAGTAGTACGAAAGTAGTAGTCAGCAGTAAATCACTCTGATGGATGTTGCTCAAAGCAGAAAGAGAAATCCACAGTGTTTCGAACATCGAAGATATCTTAACAAATGTGAGATAATACAATGTTTCAAATGGAAAGCATTTATTGGGTGTGATTTTGTTTCATATAATACACATATTCAGGAAAGTCAGACATCTCATTGATTGTTGGTCAATTTCTGTGTTGGAGCAGCAGAAGGAGATGATGGTCCCTGGAAAAAAGAATATAGTTTCTAGAGATCTTGATTTGAATATTACCTTATTAGATCCCCATCCATAGTAAGCAGTTGGATAAGCAGCAGCTCCATAAGCATAAGCATATGGATATGCAGAAATCGGAGAAGAATAATAGTAAGGAGAGGATACAACTTCTGGAGTGTAGACGATTTGCGATGAAGAAATACAGAAAAAAGCAACAGCCAAAACGATCAAACACTTTTGGAACATTTTTAGATTAGAGACTCGGAAAGTGATTTGAAGTTGGAAGAGTTCCCACTTATATAGATTCTCATTGTGTGCTTTCTCTTTTTTAAGTTCAAACAGCTTGCAAGTTGCTAAAGATAAATAACCAGTTATTGGGTGTTCTATTTGTTTCAAATGTTGCGTACTCCACTATTTGCTCGATTAAACTACAGTAGTCTCATGAGTTTTTGATACTGATCTTCTGGAGAGATTATTATAGCTTGAAAGCTAATTTCGTCGCCTTGTCTCTAGATCCTGAAATCATGTAAATGGTTATAAATGTAATCTATAAAAAGATCATGCGCAAACTTTCCTTAATCCTTGCCGAAAAGGTGGTAAGAGTAAAGTTTATTGAATCAAGAGGTTGTTCAAATA</canonical>
            <polymorphic>AGCGAAACAGAGAAAATTTACTAGAGACGGCATTTTTAAAACTGAAATGAAGTTCGGAGAGAAAGTGAATAGTGTTTTAGGCAAAAAGGGATCCATGGAAACATCAAGTAGTTGAATGTGTTGTCTGAAGTAGTACGAAAGTAGTAGTCAGCAGTAAATCACTCTGATGGATGTTGCTCAAAGCAGAAAGAGAAATCCACAGTGTTTCGAACATCGAAGATATCTTAACAAATGTGAGATAATACAATGTTTCAAATGGAAAGCATTTATTGGGTGTGATTTTGTTTCATATAATACACATATTCAGGAAAGTCAGACATCTCATTGATTGTTGGTCAATTTCTGTGTTGGAGCAGCAGAAGGAGATGATGGTCCCTGGAAAAAAGAATATAGTTTCTAGAGATCTTGATTTGAATATTACCTTATTAGATCCCCATCCATAGTAAGCAGTTGGATAAGCAGCAGCTCCATAAGCATAAGCATATGGATATGCAGAAATMGGAGAAGAATAATAGTAAGGAGAGGATACAACTTCTGGAGTGTAGACGATTTGCGATGAAGAAATACAGAAAAAAGCAACAGCCAAAACGATCAAACACTTTTGGAACATTTTTAGATTAGAGACTCGGAAAGTGATTTGAAGTTGGAAGAGTTCCCACTTATATAGATTCTCATTGTGTGCTTTCTCTTTTTTAAGTTCAAACAGCTTGCAAGTTGCTAAAGATAAATAACCAGTTATTGGGTGTTCTATTTGTTTCAAATGTTGCGTACTCCACTATTTGCTCGATTAAACTACAGTAGTCTCATGAGTTTTTGATACTGATCTTCTGGAGAGATTATTATAGCTTGAAAGCTAATTTCGTCGCCTTGTCTCTAGATCCTGAAATCATGTAAATGGTTATAAATGTAATCTATAAAAAGATCATGCGCAAACTTTCCTTAATCCTTGCCGAAAAGGTGGTAAGAGTAAAGTTTATTGAATCAAGAGGTTGTTCAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>372 186 150 127 70 56 39</canonical_bands>
                <polymorphic_bands>372 313 150 70 56 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCATAGTAAGCAGTTGGATAAG</pcr_primer_p1>
		<pcr_primer_p2>AGAAAGCACACAATGAGAATCTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCCATAGTAAGCAGTTGGATAAGCAGCAGCTCCATAAGCATAAGCATATGGATATGCAGAAATCGGAGAAGAATAATAGTAAGGAGAGGATACAACTTCTGGAGTGTAGACGATTTGCGATGAAGAAATACAGAAAAAAGCAACAGCCAAAACGATCAAACACTTTTGGAACATTTTTAGATTAGAGACTCGGAAAGTGATTTGAAGTTGGAAGAGTTCCCACTTATATAGATTCTCATTGTGTGCTTTCT</canonical_amplicon>
		<polymorphic_amplicon>TCCATAGTAAGCAGTTGGATAAGCAGCAGCTCCATAAGCATAAGCATATGGATATGCAGAAATMGGAGAAGAATAATAGTAAGGAGAGGATACAACTTCTGGAGTGTAGACGATTTGCGATGAAGAAATACAGAAAAAAGCAACAGCCAAAACGATCAAACACTTTTGGAACATTTTTAGATTAGAGACTCGGAAAGTGATTTGAAGTTGGAAGAGTTCCCACTTATATAGATTCTCATTGTGTGCTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14220</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>41666</contig_pos>
        <strand>+</strand>
        <context>GAACTTCTCT[A/G]AAAACTTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATGATTATTGCCCTAACTTTTTTTCGTTATTTAATTAAAGAACTTCTCT</left_flank>
        <right_flank>AAAACTTTTTCGCTTTGTCTTAAACCAGAACATTATTCGAAAACGGCTAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTTCTTTTATCACCTTTGTCATTATAAATTCCTTTTTTTTCTATTTTTTAAATTCAAATTTCCCGCGTTTCATCTACTTATTGTCTGTGTGTGTTTTCGGTGTAAATTGTCTAATCATAATAATGCCTTATTCTCCTTTGTTTTCTTTTTTATAGTAAGCAATAGTCTGTGATTCCGTTTTTTCAGTTTCACCGTCCATATTTTCGTTTGCTGATCCCTTACGTGTATCCAGGCGAGCTCTGAGAACACTGTTTTCTGTAATTTCTAAATTATTAAAAAACTTCCCATAAATGTTTGTGTGGTTATGCATGATGTGCCTTTTCTTCTTTTCCCACCTTGTCCTCATGATTTTTTTGTTTTCTGAATATATCAAATGCTAAAGAGATTCTAGTAGAATTTATCTTTTTTTGTATCTGTATTGCTCAAATCTCTTTTTTTTGTTGAATTTATGATTATTGCCCTAACTTTTTTTCGTTATTTAATTAAAGAACTTCTCTGAAAACTTTTTCGCTTTGTCTTAAACCAGAACATTATTCGAAAACGGCTAATTTCGAAAATTCGTTCAAACATTCGTTGGTGGCCTAGAAAATTCAACTTGTGAAAATTAGGCCATCATGTTGAAATGGCTTAAAAACATTTTTGGGGAATTTCAGGCCAGTTCTAGGCCATTCACTATGGTGGGCCAGAAAACTCAACTTGCGAAAGTTGGGCCATCATGGTAAATGACCTAGAAAAAAAATCAGGTGTAGGTTAGACCAATTCTGGACCATCAACTACGGCGGCCTAGAAAAACCACCGGAGTGAGTTAGACCACTCTGTTCCTCAAATTAAAACGGAGTCTGTGATTTTGGACATCGATCAAAGAAATTTGGAAATCTTGTTCGAACTAGTTTTTGAAAACTGTTCGAAAGCAACGAAAATCACACAATTTAAAAGATATCAGTCCAACCAAAACGGAAGCTACGTTCTTTGAAAATCACTTATCAGTATTTATTAAA</canonical>
            <polymorphic>TCTTTCTTTTATCACCTTTGTCATTATAAATTCCTTTTTTTTCTATTTTTTAAATTCAAATTTCCCGCGTTTCATCTACTTATTGTCTGTGTGTGTTTTCGGTGTAAATTGTCTAATCATAATAATGCCTTATTCTCCTTTGTTTTCTTTTTTATAGTAAGCAATAGTCTGTGATTCCGTTTTTTCAGTTTCACCGTCCATATTTTCGTTTGCTGATCCCTTACGTGTATCCAGGCGAGCTCTGAGAACACTGTTTTCTGTAATTTCTAAATTATTAAAAAACTTCCCATAAATGTTTGTGTGGTTATGCATGATGTGCCTTTTCTTCTTTTCCCACCTTGTCCTCATGATTTTTTTGTTTTCTGAATATATCAAATGCTAAAGAGATTCTAGTAGAATTTATCTTTTTTTGTATCTGTATTGCTCAAATCTCTTTTTTTTGTTGAATTTATGATTATTGCCCTAACTTTTTTTCGTTATTTAATTAAAGAACTTCTCTRAAAACTTTTTCGCTTTGTCTTAAACCAGAACATTATTCGAAAACGGCTAATTTCGAAAATTCGTTCAAACATTCGTTGGTGGCCTAGAAAATTCAACTTGTGAAAATTAGGCCATCATGTTGAAATGGCTTAAAAACATTTTTGGGGAATTTCAGGCCAGTTCTAGGCCATTCACTATGGTGGGCCAGAAAACTCAACTTGCGAAAGTTGGGCCATCATGGTAAATGACCTAGAAAAAAAATCAGGTGTAGGTTAGACCAATTCTGGACCATCAACTACGGCGGCCTAGAAAAACCACCGGAGTGAGTTAGACCACTCTGTTCCTCAAATTAAAACGGAGTCTGTGATTTTGGACATCGATCAAAGAAATTTGGAAATCTTGTTCGAACTAGTTTTTGAAAACTGTTCGAAAGCAACGAAAATCACACAATTTAAAAGATATCAGTCCAACCAAAACGGAAGCTACGTTCTTTGAAAATCACTTATCAGTATTTATTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>501 243 135 121</canonical_bands>
                <polymorphic_bands>636 243 121</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACCTTGTCCTCATGATTTT</pcr_primer_p1>
		<pcr_primer_p2>CGAATGTTTGAACGAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CACCTTGTCCTCATGATTTTTTTGTTTTCTGAATATATCAAATGCTAAAGAGATTCTAGTAGAATTTATCTTTTTTTGTATCTGTATTGCTCAAATCTCTTTTTTTTGTTGAATTTATGATTATTGCCCTAACTTTTTTTCGTTATTTAATTAAAGAACTTCTCTGAAAACTTTTTCGCTTTGTCTTAAACCAGAACATTATTCGAAAACGGCTAATTTCGAAAATTCGTTCAAACATTCG</canonical_amplicon>
		<polymorphic_amplicon>CACCTTGTCCTCATGATTTTTTTGTTTTCTGAATATATCAAATGCTAAAGAGATTCTAGTAGAATTTATCTTTTTTTGTATCTGTATTGCTCAAATCTCTTTTTTTTGTTGAATTTATGATTATTGCCCTAACTTTTTTTCGTTATTTAATTAAAGAACTTCTCTRAAAACTTTTTCGCTTTGTCTTAAACCAGAACATTATTCGAAAACGGCTAATTTCGAAAATTCGTTCAAACATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14221</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>44038</contig_pos>
        <strand>+</strand>
        <context>TTGAAAGAAA[A/C]AAATATTTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATTTTGCCCTGTACGATTTGTCAGAATTAATTATATTTTTTGAAAGAAA</left_flank>
        <right_flank>AAATATTTTACCAGAGTGTTTCACTTTGAAAATGTCGTGGGAAAACGGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACAAGATACGGTAGTCTCAGAAGTTTTACCAGTTTATATAAACAAGTTGGGAATAAGAATACAAAAATGAAATGAAAAGAATAACCGCAACCACAGAAAAGGTATTCGGAAAGGTAGTCTACCTCTATTGATTCTCTATTGAGTCAATTGAGTTTGCTCTGTAACTCTGTTCATAGACAAGATACAGTATTCCAAATAATACCGTTTTGTAGTACTCGTGGAGCTCTATCATATCTGATTTAGTTGGATTGAAAATATTGATTCTGAAAGAAATTATGGCAGGGCCCGCAAAGGCCCGGATTACAACTATGCTATTTATTTTGCCTGTGTCTGTTTGAAGGGGACCGTCTTTGTGGAGCGCACCTGCTGTACCATAATTTGGCGTAAGATATTACGATAGATTTTTCTGCTTTCAGCGAATCTGACTGAATGATATCAGATTCTGATAGATTTTGCCCTGTACGATTTGTCAGAATTAATTATATTTTTTGAAAGAAACAAATATTTTACCAGAGTGTTTCACTTTGAAAATGTCGTGGGAAAACGGAATAATTCAGGATTACGGAAATCCTTTATTCAGCAAAAAAGGCAATTAAAAAATAAATATTTGAAGAGAAGTACCCGAATGAAACTGATTACTGAAGTGAATTTAATTAACTAAAAATTAACTAAAAATGTATCTACGAATGTGCAGTTATCTACCAAGCAATGAACTTGTTATTTTTCCGATTCTTGTATTCTTCTGGATCCTGATTCTTCATTTCCAGATATGTATGCAGTTTTGGAGGATGTTTGTGAGCATTACGGCTCAAATCAATCCGTCCCCACTTCAATGAACTCGGAACTTTTGGAAGGAACATGTTTTGATGCATTTGTTGTTGCTCGCTATGATGTTTCCAGAAGACGTCCTCTTCGAATTTTGCTGAAACATTGATAATGAATTTAACATACTTATTTCTGAAGTACTTACGTGGATCATCATCTTGAAGTGAGTCAACA</canonical>
            <polymorphic>TACAAGATACGGTAGTCTCAGAAGTTTTACCAGTTTATATAAACAAGTTGGGAATAAGAATACAAAAATGAAATGAAAAGAATAACCGCAACCACAGAAAAGGTATTCGGAAAGGTAGTCTACCTCTATTGATTCTCTATTGAGTCAATTGAGTTTGCTCTGTAACTCTGTTCATAGACAAGATACAGTATTCCAAATAATACCGTTTTGTAGTACTCGTGGAGCTCTATCATATCTGATTTAGTTGGATTGAAAATATTGATTCTGAAAGAAATTATGGCAGGGCCCGCAAAGGCCCGGATTACAACTATGCTATTTATTTTGCCTGTGTCTGTTTGAAGGGGACCGTCTTTGTGGAGCGCACCTGCTGTACCATAATTTGGCGTAAGATATTACGATAGATTTTTCTGCTTTCAGCGAATCTGACTGAATGATATCAGATTCTGATAGATTTTGCCCTGTACGATTTGTCAGAATTAATTATATTTTTTGAAAGAAAMAAATATTTTACCAGAGTGTTTCACTTTGAAAATGTCGTGGGAAAACGGAATAATTCAGGATTACGGAAATCCTTTATTCAGCAAAAAAGGCAATTAAAAAATAAATATTTGAAGAGAAGTACCCGAATGAAACTGATTACTGAAGTGAATTTAATTAACTAAAAATTAACTAAAAATGTATCTACGAATGTGCAGTTATCTACCAAGCAATGAACTTGTTATTTTTCCGATTCTTGTATTCTTCTGGATCCTGATTCTTCATTTCCAGATATGTATGCAGTTTTGGAGGATGTTTGTGAGCATTACGGCTCAAATCAATCCGTCCCCACTTCAATGAACTCGGAACTTTTGGAAGGAACATGTTTTGATGCATTTGTTGTTGCTCGCTATGATGTTTCCAGAAGACGTCCTCTTCGAATTTTGCTGAAACATTGATAATGAATTTAACATACTTATTTCTGAAGTACTTACGTGGATCATCATCTTGAAGTGAGTCAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACGATAGATTTTTCTGCTTTC</pcr_primer_p1>
		<pcr_primer_p2>TAATCAGTTTCATTCGGGTACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTACGATAGATTTTTCTGCTTTCAGCGAATCTGACTGAATGATATCAGATTCTGATAGATTTTGCCCTGTACGATTTGTCAGAATTAATTATATTTTTTGAAAGAAACAAATATTTTACCAGAGTGTTTCACTTTGAAAATGTCGTGGGAAAACGGAATAATTCAGGATTACGGAAATCCTTTATTCAGCAAAAAAGGCAATTAAAAAATAAATATTTGAAGAGAAGTACCCGAATGAAACTGATTA</canonical_amplicon>
		<polymorphic_amplicon>TTACGATAGATTTTTCTGCTTTCAGCGAATCTGACTGAATGATATCAGATTCTGATAGATTTTGCCCTGTACGATTTGTCAGAATTAATTATATTTTTTGAAAGAAAMAAATATTTTACCAGAGTGTTTCACTTTGAAAATGTCGTGGGAAAACGGAATAATTCAGGATTACGGAAATCCTTTATTCAGCAAAAAAGGCAATTAAAAAATAAATATTTGAAGAGAAGTACCCGAATGAAACTGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14222</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>43921</contig_pos>
        <strand>+</strand>
        <context>CCATAATTTG[C/G]CGTAAGATAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGTTTGAAGGGGACCGTCTTTGTGGAGCGCACCTGCTGTACCATAATTTG</left_flank>
        <right_flank>CGTAAGATATTACGATAGATTTTTCTGCTTTCAGCGAATCTGACTGAATG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATCCTTTATTGAATTCAATTCTAAACTGTTGCTTAATACACTTCTGAACTCGTTTAGAACAAAATGACAATAATAGAATTTCCTTCGGTTCCATTTCATTGAAAACTAAATCTTTTACAAGATACGGTAGTCTCAGAAGTTTTACCAGTTTATATAAACAAGTTGGGAATAAGAATACAAAAATGAAATGAAAAGAATAACCGCAACCACAGAAAAGGTATTCGGAAAGGTAGTCTACCTCTATTGATTCTCTATTGAGTCAATTGAGTTTGCTCTGTAACTCTGTTCATAGACAAGATACAGTATTCCAAATAATACCGTTTTGTAGTACTCGTGGAGCTCTATCATATCTGATTTAGTTGGATTGAAAATATTGATTCTGAAAGAAATTATGGCAGGGCCCGCAAAGGCCCGGATTACAACTATGCTATTTATTTTGCCTGTGTCTGTTTGAAGGGGACCGTCTTTGTGGAGCGCACCTGCTGTACCATAATTTGGCGTAAGATATTACGATAGATTTTTCTGCTTTCAGCGAATCTGACTGAATGATATCAGATTCTGATAGATTTTGCCCTGTACGATTTGTCAGAATTAATTATATTTTTTGAAAGAAACAAATATTTTACCAGAGTGTTTCACTTTGAAAATGTCGTGGGAAAACGGAATAATTCAGGATTACGGAAATCCTTTATTCAGCAAAAAAGGCAATTAAAAAATAAATATTTGAAGAGAAGTACCCGAATGAAACTGATTACTGAAGTGAATTTAATTAACTAAAAATTAACTAAAAATGTATCTACGAATGTGCAGTTATCTACCAAGCAATGAACTTGTTATTTTTCCGATTCTTGTATTCTTCTGGATCCTGATTCTTCATTTCCAGATATGTATGCAGTTTTGGAGGATGTTTGTGAGCATTACGGCTCAAATCAATCCGTCCCCACTTCAATGAACTCGGAACTTTTGGAAGGAACATGTTTTGATGCATTTGTTGTTGC</canonical>
            <polymorphic>AAATCCTTTATTGAATTCAATTCTAAACTGTTGCTTAATACACTTCTGAACTCGTTTAGAACAAAATGACAATAATAGAATTTCCTTCGGTTCCATTTCATTGAAAACTAAATCTTTTACAAGATACGGTAGTCTCAGAAGTTTTACCAGTTTATATAAACAAGTTGGGAATAAGAATACAAAAATGAAATGAAAAGAATAACCGCAACCACAGAAAAGGTATTCGGAAAGGTAGTCTACCTCTATTGATTCTCTATTGAGTCAATTGAGTTTGCTCTGTAACTCTGTTCATAGACAAGATACAGTATTCCAAATAATACCGTTTTGTAGTACTCGTGGAGCTCTATCATATCTGATTTAGTTGGATTGAAAATATTGATTCTGAAAGAAATTATGGCAGGGCCCGCAAAGGCCCGGATTACAACTATGCTATTTATTTTGCCTGTGTCTGTTTGAAGGGGACCGTCTTTGTGGAGCGCACCTGCTGTACCATAATTTGSCGTAAGATATTACGATAGATTTTTCTGCTTTCAGCGAATCTGACTGAATGATATCAGATTCTGATAGATTTTGCCCTGTACGATTTGTCAGAATTAATTATATTTTTTGAAAGAAACAAATATTTTACCAGAGTGTTTCACTTTGAAAATGTCGTGGGAAAACGGAATAATTCAGGATTACGGAAATCCTTTATTCAGCAAAAAAGGCAATTAAAAAATAAATATTTGAAGAGAAGTACCCGAATGAAACTGATTACTGAAGTGAATTTAATTAACTAAAAATTAACTAAAAATGTATCTACGAATGTGCAGTTATCTACCAAGCAATGAACTTGTTATTTTTCCGATTCTTGTATTCTTCTGGATCCTGATTCTTCATTTCCAGATATGTATGCAGTTTTGGAGGATGTTTGTGAGCATTACGGCTCAAATCAATCCGTCCCCACTTCAATGAACTCGGAACTTTTGGAAGGAACATGTTTTGATGCATTTGTTGTTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNTGG</site>
                <isoschizomers>
                    <enzyme>AccB7I</enzyme>
                    <enzyme>PflBI</enzyme>
                    <enzyme>PflMI</enzyme>
                    <enzyme>Van91I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTTATTTTGCCTGTGTCTGT</pcr_primer_p1>
		<pcr_primer_p2>ATCCTGAATTATTCCGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTATTTATTTTGCCTGTGTCTGTTTGAAGGGGACCGTCTTTGTGGAGCGCACCTGCTGTACCATAATTTGGCGTAAGATATTACGATAGATTTTTCTGCTTTCAGCGAATCTGACTGAATGATATCAGATTCTGATAGATTTTGCCCTGTACGATTTGTCAGAATTAATTATATTTTTTGAAAGAAACAAATATTTTACCAGAGTGTTTCACTTTGAAAATGTCGTGGGAAAACGGAATAATTCAGGAT</canonical_amplicon>
		<polymorphic_amplicon>CTATTTATTTTGCCTGTGTCTGTTTGAAGGGGACCGTCTTTGTGGAGCGCACCTGCTGTACCATAATTTGSCGTAAGATATTACGATAGATTTTTCTGCTTTCAGCGAATCTGACTGAATGATATCAGATTCTGATAGATTTTGCCCTGTACGATTTGTCAGAATTAATTATATTTTTTGAAAGAAACAAATATTTTACCAGAGTGTTTCACTTTGAAAATGTCGTGGGAAAACGGAATAATTCAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14223</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>105240</contig_pos>
        <strand></strand>
        <context>GAGCAATCAG[T/A]TGTTGCATTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GACAGGAACTAGTTTTTTTTGTGTGGGAAAAAAGAGTTATGAGCAATCAG</left_flank>
        <right_flank>TGTTGCATTATTCAAGATTTCATAATTCAGGAATATAAAAGAAAACGTTG</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACAAGTAACAATTGATAATACTCCTCGCCGGGTTTTCATTCTGAAAAATTTGAATTTTGGATTCAAATTGGATTCTGAATTACAATAAGAAATTAGCATATTGATTACGAAATGTAAAAGAAGGATGACCTCGAAAAAAGGTGTAAGGAAATGAATGAATATCATAATTTCGTTTGAATCTTCATATCTCGTTCGAAAAATCTTTTTGAACGATAGGAACCAAATGGTAGATAGCGGCAAAAAAGACAGATAGGAGGGCGAAAAAACGAAATTAATGGGTTTGACACAATTTCAACACAAAGATATTAGAGAAAGGTAAGTACACACGTAATAATGTCTTCGAGACATAGAGAGAGCCAGAAAGGGGTGAAATGGATACCCGAGGAGGTAAATATTGAGATGATGGGGGTGAGTAACAAGAAGTGGTCTGGAAGAAAAACTTATGTGGACAGGAACTAGTTTTTTTTGTGTGGGAAAAAAGAGTTATGAGCAATCAGTTGTTGCATTATTCAAGATTTCATAATTCAGGAATATAAAAGAAAACGTTGAAAAAACAAAACTTCTGAATTTCGAAGTTGATCTTAAAGTCGGTCTTACCAAACGTTTCTGTTTCAGATAATCTACAGCAGTTGCACCTCAATACTTTATTTAGTTCGCGGAAAAGACGATGTTCAACCCTAACCGGTAAAAATTTTATTTGAAAAATTGTGCAAATTTCTATTAAAATAACAAAAGCACAGTTGCTTCTTCAGATATACAAAATTCAAGTGGAAGATTTTGTCTCTCGGTAAATGCCGACATATTTCCATTGTGTACATGTGTGAGGGATGAGAGGAAAACATGAAGGAGGCGCATTTATGAATTGAATCGACACGATAAAATACTAATTGGCTCCATGTCAAAGGGCAAGTGGGAGAAATCTTCAGAAAGGAGGATGAAGAGAAGAAATGAAACAATGGAAAGTTAAGAAATTGTGAAAGCTGAAGTGATTCTAAAAT</canonical>
            <polymorphic>AAACAAGTAACAATTGATAATACTCCTCGCCGGGTTTTCATTCTGAAAAATTTGAATTTTGGATTCAAATTGGATTCTGAATTACAATAAGAAATTAGCATATTGATTACGAAATGTAAAAGAAGGATGACCTCGAAAAAAGGTGTAAGGAAATGAATGAATATCATAATTTCGTTTGAATCTTCATATCTCGTTCGAAAAATCTTTTTGAACGATAGGAACCAAATGGTAGATAGCGGCAAAAAAGACAGATAGGAGGGCGAAAAAACGAAATTAATGGGTTTGACACAATTTCAACACAAAGATATTAGAGAAAGGTAAGTACACACGTAATAATGTCTTCGAGACATAGAGAGAGCCAGAAAGGGGTGAAATGGATACCCGAGGAGGTAAATATTGAGATGATGGGGGTGAGTAACAAGAAGTGGTCTGGAAGAAAAACTTATGTGGACAGGAACTAGTTTTTTTTGTGTGGGAAAAAAGAGTTATGAGCAATCAGWTGTTGCATTATTCAAGATTTCATAATTCAGGAATATAAAAGAAAACGTTGAAAAAACAAAACTTCTGAATTTCGAAGTTGATCTTAAAGTCGGTCTTACCAAACGTTTCTGTTTCAGATAATCTACAGCAGTTGCACCTCAATACTTTATTTAGTTCGCGGAAAAGACGATGTTCAACCCTAACCGGTAAAAATTTTATTTGAAAAATTGTGCAAATTTCTATTAAAATAACAAAAGCACAGTTGCTTCTTCAGATATACAAAATTCAAGTGGAAGATTTTGTCTCTCGGTAAATGCCGACATATTTCCATTGTGTACATGTGTGAGGGATGAGAGGAAAACATGAAGGAGGCGCATTTATGAATTGAATCGACACGATAAAATACTAATTGGCTCCATGTCAAAGGGCAAGTGGGAGAAATCTTCAGAAAGGAGGATGAAGAGAAGAAATGAAACAATGGAAAGTTAAGAAATTGTGAAAGCTGAAGTGATTCTAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGACATAGAGAGAGCCAGAAAG</pcr_primer_p1>
		<pcr_primer_p2>AGACCGACTTTAAGATCAACTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGACATAGAGAGAGCCAGAAAGGGGTGAAATGGATACCCGAGGAGGTAAATATTGAGATGATGGGGGTGAGTAACAAGAAGTGGTCTGGAAGAAAAACTTATGTGGACAGGAACTAGTTTTTTTTGTGTGGGAAAAAAGAGTTATGAGCAATCAGTTGTTGCATTATTCAAGATTTCATAATTCAGGAATATAAAAGAAAACGTTGAAAAAACAAAACTTCTGAATTTCGAAGTTGATCTTAAAGTCGGTCT</canonical_amplicon>
		<polymorphic_amplicon>AGACATAGAGAGAGCCAGAAAGGGGTGAAATGGATACCCGAGGAGGTAAATATTGAGATGATGGGGGTGAGTAACAAGAAGTGGTCTGGAAGAAAAACTTATGTGGACAGGAACTAGTTTTTTTTGTGTGGGAAAAAAGAGTTATGAGCAATCAGWTGTTGCATTATTCAAGATTTCATAATTCAGGAATATAAAAGAAAACGTTGAAAAAACAAAACTTCTGAATTTCGAAGTTGATCTTAAAGTCGGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14224</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>156864</contig_pos>
        <strand>+</strand>
        <context>CCGCATATGT[A/G]ATATCCCACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTAAATCGAATATTCCAGAAAGAAAACCAGCAGCTAGCCGCATATGT</left_flank>
        <right_flank>ATATCCCACACTCAACGTTGGTATGATAATCGTCTGATTTGGGATCCGAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTTCTTATTCTTCTTTCATTTTGAGCCTTAAAAATTCATTTGCAGACATATTTCCTTGAATCATCTTGTCTTTTATTCTGTGTTTTTGCAATTTTTTTTCGAATTATTTTTTTCTGAAAGCAAAATGCTTCTGAATTCCTGAATTCTAGGTACCCTGTGCTATAGAAAAATAATCAGTCGAGGCTTCAATAATAATTGGAGAGTTTGAAAAATGGGTGAGGATTTTTCAGCTAAAACGATGAATATCTAAAACAATGACAACTTAAAAATCTGAAATTTTGAAACAAACCCTATGATTCCAGACAACGAAACTTCTGCAATTTTAAATGACATCTTTCACGGATACGATAAAAGAGTTCTTCCATTTGTCCAAGGACCAGTTCTAGTCAATATGACTATTGTTCTGGGAATACTGATTGAATTGGTGAGTTATTAAAAATACAACGATTTTTAAATCGAATATTCCAGAAAGAAAACCAGCAGCTAGCCGCATATGTGATATCCCACACTCAACGTTGGTATGATAATCGTCTGATTTGGGATCCGAGTAAATACAGAGGTCAACGAGAAGTCATTGTTCCCCAGAACATGGTTTGGATTCCCAAACTTTTTGTGTATAATAGGTGAGTCTTTTTTTAATTGGCTCCTAAATAAAATACCAATTGTTTAGCTTGGAATCCAAAGATATGCTAACCGAAAATCGAGCGGATGTCCGACTGTACCATAATGGAAGAATCAAAGTTTGAATCGAAAAGTATGAAAAGCGAAAAATTTTAGATTTCCAGATAAATATCCCACAATATGTGCAAGCTATATGTCGAATTCAAACTCAAGCATTTCCATTTGATTGCCAGTTTTGTGCCGTTGCTCTAGCATCCCCGCTGTTGAATGTGGAAGAGATGATAGTGAATGCAACGCAGCCCCCGAGGGATTCTTATTTTACTGTGAGTTCCAAATGGAAGTTTGAAAATTAATTCAAATTAAAAAATGCATTTTCT</canonical>
            <polymorphic>ACTTTCTTATTCTTCTTTCATTTTGAGCCTTAAAAATTCATTTGCAGACATATTTCCTTGAATCATCTTGTCTTTTATTCTGTGTTTTTGCAATTTTTTTTCGAATTATTTTTTTCTGAAAGCAAAATGCTTCTGAATTCCTGAATTCTAGGTACCCTGTGCTATAGAAAAATAATCAGTCGAGGCTTCAATAATAATTGGAGAGTTTGAAAAATGGGTGAGGATTTTTCAGCTAAAACGATGAATATCTAAAACAATGACAACTTAAAAATCTGAAATTTTGAAACAAACCCTATGATTCCAGACAACGAAACTTCTGCAATTTTAAATGACATCTTTCACGGATACGATAAAAGAGTTCTTCCATTTGTCCAAGGACCAGTTCTAGTCAATATGACTATTGTTCTGGGAATACTGATTGAATTGGTGAGTTATTAAAAATACAACGATTTTTAAATCGAATATTCCAGAAAGAAAACCAGCAGCTAGCCGCATATGTRATATCCCACACTCAACGTTGGTATGATAATCGTCTGATTTGGGATCCGAGTAAATACAGAGGTCAACGAGAAGTCATTGTTCCCCAGAACATGGTTTGGATTCCCAAACTTTTTGTGTATAATAGGTGAGTCTTTTTTTAATTGGCTCCTAAATAAAATACCAATTGTTTAGCTTGGAATCCAAAGATATGCTAACCGAAAATCGAGCGGATGTCCGACTGTACCATAATGGAAGAATCAAAGTTTGAATCGAAAAGTATGAAAAGCGAAAAATTTTAGATTTCCAGATAAATATCCCACAATATGTGCAAGCTATATGTCGAATTCAAACTCAAGCATTTCCATTTGATTGCCAGTTTTGTGCCGTTGCTCTAGCATCCCCGCTGTTGAATGTGGAAGAGATGATAGTGAATGCAACGCAGCCCCCGAGGGATTCTTATTTTACTGTGAGTTCCAAATGGAAGTTTGAAAATTAATTCAAATTAAAAAATGCATTTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>171 121 107 88 84 77 71 59 55 51 39 32 15 11 9 8 2</canonical_bands>
                <polymorphic_bands>171 121 107 88 84 79 77 59 55 51 39 32 15 11 9 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAATGACATCTTTCACGGATAC</pcr_primer_p1>
		<pcr_primer_p2>ACTTCTCGTTGACCTCTGTATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAAATGACATCTTTCACGGATACGATAAAAGAGTTCTTCCATTTGTCCAAGGACCAGTTCTAGTCAATATGACTATTGTTCTGGGAATACTGATTGAATTGGTGAGTTATTAAAAATACAACGATTTTTAAATCGAATATTCCAGAAAGAAAACCAGCAGCTAGCCGCATATGTGATATCCCACACTCAACGTTGGTATGATAATCGTCTGATTTGGGATCCGAGTAAATACAGAGGTCAACGAGAAGT</canonical_amplicon>
		<polymorphic_amplicon>TAAATGACATCTTTCACGGATACGATAAAAGAGTTCTTCCATTTGTCCAAGGACCAGTTCTAGTCAATATGACTATTGTTCTGGGAATACTGATTGAATTGGTGAGTTATTAAAAATACAACGATTTTTAAATCGAATATTCCAGAAAGAAAACCAGCAGCTAGCCGCATATGTRATATCCCACACTCAACGTTGGTATGATAATCGTCTGATTTGGGATCCGAGTAAATACAGAGGTCAACGAGAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14226</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>173972</contig_pos>
        <strand></strand>
        <context>AAAACCTTAT[C/G]AACGTATAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGAGCTTCTTCTATGGAAAATACATACGGTATGTGTTTCTAAAACCTTAT</left_flank>
        <right_flank>AACGTATAATCAAAAGTTAAATCCGAATTAAACATTTGAAGAAAGTTCCA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTGGGAGACACTTTTTTCACTTTTTTCAGAGAGGATATGTCTGTGTGTACACACTTTGTGACACATAACAGTACTACTCATACGTCTGTAGGGGAATTGTACTCATGTGCTCTTTGGAGTTGATCATGAGAGAGAACAAAAGTCATTGGGATAAGTGTGAAGAACTATCAGCGTAGAGCAAGAATCAAGTCCAATATGACTAAAAAGTGACTGGAAGATTTGAGAAAAGTTTTGAATAACAACTCAAAGATCTACCATAAAACCTGTAATAAAAGATCACCCACACGTCAAATTTAAAGCCAATTTTTCTCGATTCCTGTCAAAGATATGAAAAAGCTCTCAACGGATAAAATGTTAGTAATATTATGATACATTATTTATCAGTTGACTTCTTCTCGATATCTTTCACAGAAATCGAGATAATTGAGCTTAATGTTGACGGTTTGAATGAGCTTCTTCTATGGAAAATACATACGGTATGTGTTTCTAAAACCTTATCAACGTATAATCAAAAGTTAAATCCGAATTAAACATTTGAAGAAAGTTCCAGACATATTTGTTCATATTTGAAAACTCGAACTTATATACCTTCTCATCAATTTCGTAAATCATCGATCTTTAAAAATTGGACTCTTGAACTTATCGTTTTTGTGTCCAAACCATTTCACCCCTCAATGTCTCAATGGCCTTATCTTTGTACGCTACCATAGACAACTCATCAACAAATAGACACACTATTTTGTGTATTTTGGAGTATATCGCCTCGATGTCCACTCGACGAATCCACATTATTTATCATTGGAGCACCACGGAACTGTGATGTTTGCAATTTGAAATTGGTGATAGTGATGTTGTGAGTGGACAAGAAAAAATGATATCATTTTGTTTTTAGAGGTCTGGATCATTTTTTTGAATTTGTAAAAAGTAATTCATGTTTTCAAGAATTTCCAAATTGTTAAAGCTTAAGTGCTAAAAGTGTCATTGAGAAGGGTGTGGTTT</canonical>
            <polymorphic>GCTGGGAGACACTTTTTTCACTTTTTTCAGAGAGGATATGTCTGTGTGTACACACTTTGTGACACATAACAGTACTACTCATACGTCTGTAGGGGAATTGTACTCATGTGCTCTTTGGAGTTGATCATGAGAGAGAACAAAAGTCATTGGGATAAGTGTGAAGAACTATCAGCGTAGAGCAAGAATCAAGTCCAATATGACTAAAAAGTGACTGGAAGATTTGAGAAAAGTTTTGAATAACAACTCAAAGATCTACCATAAAACCTGTAATAAAAGATCACCCACACGTCAAATTTAAAGCCAATTTTTCTCGATTCCTGTCAAAGATATGAAAAAGCTCTCAACGGATAAAATGTTAGTAATATTATGATACATTATTTATCAGTTGACTTCTTCTCGATATCTTTCACAGAAATCGAGATAATTGAGCTTAATGTTGACGGTTTGAATGAGCTTCTTCTATGGAAAATACATACGGTATGTGTTTCTAAAACCTTATSAACGTATAATCAAAAGTTAAATCCGAATTAAACATTTGAAGAAAGTTCCAGACATATTTGTTCATATTTGAAAACTCGAACTTATATACCTTCTCATCAATTTCGTAAATCATCGATCTTTAAAAATTGGACTCTTGAACTTATCGTTTTTGTGTCCAAACCATTTCACCCCTCAATGTCTCAATGGCCTTATCTTTGTACGCTACCATAGACAACTCATCAACAAATAGACACACTATTTTGTGTATTTTGGAGTATATCGCCTCGATGTCCACTCGACGAATCCACATTATTTATCATTGGAGCACCACGGAACTGTGATGTTTGCAATTTGAAATTGGTGATAGTGATGTTGTGAGTGGACAAGAAAAAATGATATCATTTTGTTTTTAGAGGTCTGGATCATTTTTTTGAATTTGTAAAAAGTAATTCATGTTTTCAAGAATTTCCAAATTGTTAAAGCTTAAGTGCTAAAAGTGTCATTGAGAAGGGTGTGGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAAGTTTTGAATAACAACTCA</pcr_primer_p1>
		<pcr_primer_p2>AAATATGTCTGGAACTTTCTTCA</pcr_primer_p2>
		<pcr_amplicon_size>336</pcr_amplicon_size>
		<canonical_amplicon>AGAAAAGTTTTGAATAACAACTCAAAGATCTACCATAAAACCTGTAATAAAAGATCACCCACACGTCAAATTTAAAGCCAATTTTTCTCGATTCCTGTCAAAGATATGAAAAAGCTCTCAACGGATAAAATGTTAGTAATATTATGATACATTATTTATCAGTTGACTTCTTCTCGATATCTTTCACAGAAATCGAGATAATTGAGCTTAATGTTGACGGTTTGAATGAGCTTCTTCTATGGAAAATACATACGGTATGTGTTTCTAAAACCTTATCAACGTATAATCAAAAGTTAAATCCGAATTAAACATTTGAAGAAAGTTCCAGACATATTT</canonical_amplicon>
		<polymorphic_amplicon>AGAAAAGTTTTGAATAACAACTCAAAGATCTACCATAAAACCTGTAATAAAAGATCACCCACACGTCAAATTTAAAGCCAATTTTTCTCGATTCCTGTCAAAGATATGAAAAAGCTCTCAACGGATAAAATGTTAGTAATATTATGATACATTATTTATCAGTTGACTTCTTCTCGATATCTTTCACAGAAATCGAGATAATTGAGCTTAATGTTGACGGTTTGAATGAGCTTCTTCTATGGAAAATACATACGGTATGTGTTTCTAAAACCTTATSAACGTATAATCAAAAGTTAAATCCGAATTAAACATTTGAAGAAAGTTCCAGACATATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14227</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>199297</contig_pos>
        <strand>+</strand>
        <context>AATGTCATAT[C/T]CGTTTTTATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCAGACATTTCTTCATAACGTGGAAGAAGCAGCGATCCGAAATGTCATAT</left_flank>
        <right_flank>CGTTTTTATGATACCCGACGATTGATGGATAGGTCTGAAAAATAACATTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGTTGAGAACAGATGATTCATGAAGGGAAGAAAATGTTCTCGTCCTTTGATATTCACTGATTTTTTCACAAATATTTGAAGTCGATCACTATCCTTGCGATCTATCGGAGTTGTTCGGTCTTCTCTTTTGAAGCATTCCGTAGACTTGCAATTGCTATCGTCCACTTTGTATGGCAAAGGCACACAATAGGAAAAATGGTTCCCATGCGAAGAGAAAGATTTGGTATCTGTTTCATCGTTCTTCCATGGTTCCAGTGTGAGGGCGTCCAGTCTTGCATCGAATTTTTCGGCCAAGGTGGGAAATCTAAAAATGAATTTTGAGATGTTTTAAAAATTCAGATTAACTCACATTTGAGACATTTTGTTTGCTGACCCTCTGATTGGAAAAATCAAATAAAGAGAGTGATAAAAAAATTTTGGATCCAACTTGTACTTGTTTACCTCTTGCAGACATTTCTTCATAACGTGGAAGAAGCAGCGATCCGAAATGTCATATTCGTTTTTATGATACCCGACGATTGATGGATAGGTCTGAAAAATAACATTTTTTGTGTTAAGAATACGGTATTGTCTCTAATAGAAGTCTACCCGAAAATTTATCAGTTAACAATTTTTTGGTATCTTTGGCAGGTATCGAGATAACTGAGCTCAAAGTTGACAGGTTGGGTGGGCGTCTATTTGAGAAAACACGGCTTTTTGTTATTCGAGAACTTTATGCATCACAATGATGATAGATGAACAACATAGAAACTACCTATTCTTTTCCTGATACTTTCAAGTGAATATCACCAACCTGCTGTAGAATTTCCGCAATTTTATCATGGTCCACATTCTCATTGACATATGGCATGATCAGCGTTTCTTCATCGGGAATTTTCACATTTTCGTAGGCTATCTTGTAACCGCACCCTTCTTCAATCTCGTCATCATCATCATCATCACTTTCCTGAAAGAAATTATTGGAAGCATTTTTTTTCTGACGAAACCCTTACCATTT</canonical>
            <polymorphic>TTTTGTTGAGAACAGATGATTCATGAAGGGAAGAAAATGTTCTCGTCCTTTGATATTCACTGATTTTTTCACAAATATTTGAAGTCGATCACTATCCTTGCGATCTATCGGAGTTGTTCGGTCTTCTCTTTTGAAGCATTCCGTAGACTTGCAATTGCTATCGTCCACTTTGTATGGCAAAGGCACACAATAGGAAAAATGGTTCCCATGCGAAGAGAAAGATTTGGTATCTGTTTCATCGTTCTTCCATGGTTCCAGTGTGAGGGCGTCCAGTCTTGCATCGAATTTTTCGGCCAAGGTGGGAAATCTAAAAATGAATTTTGAGATGTTTTAAAAATTCAGATTAACTCACATTTGAGACATTTTGTTTGCTGACCCTCTGATTGGAAAAATCAAATAAAGAGAGTGATAAAAAAATTTTGGATCCAACTTGTACTTGTTTACCTCTTGCAGACATTTCTTCATAACGTGGAAGAAGCAGCGATCCGAAATGTCATATYCGTTTTTATGATACCCGACGATTGATGGATAGGTCTGAAAAATAACATTTTTTGTGTTAAGAATACGGTATTGTCTCTAATAGAAGTCTACCCGAAAATTTATCAGTTAACAATTTTTTGGTATCTTTGGCAGGTATCGAGATAACTGAGCTCAAAGTTGACAGGTTGGGTGGGCGTCTATTTGAGAAAACACGGCTTTTTGTTATTCGAGAACTTTATGCATCACAATGATGATAGATGAACAACATAGAAACTACCTATTCTTTTCCTGATACTTTCAAGTGAATATCACCAACCTGCTGTAGAATTTCCGCAATTTTATCATGGTCCACATTCTCATTGACATATGGCATGATCAGCGTTTCTTCATCGGGAATTTTCACATTTTCGTAGGCTATCTTGTAACCGCACCCTTCTTCAATCTCGTCATCATCATCATCATCACTTTCCTGAAAGAAATTATTGGAAGCATTTTTTTTCTGACGAAACCCTTACCATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTCACATTTGAGACATTTTGT</pcr_primer_p1>
		<pcr_primer_p2>CGGGTAGACTTCTATTAGAGACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACTCACATTTGAGACATTTTGTTTGCTGACCCTCTGATTGGAAAAATCAAATAAAGAGAGTGATAAAAAAATTTTGGATCCAACTTGTACTTGTTTACCTCTTGCAGACATTTCTTCATAACGTGGAAGAAGCAGCGATCCGAAATGTCATATTCGTTTTTATGATACCCGACGATTGATGGATAGGTCTGAAAAATAACATTTTTTGTGTTAAGAATACGGTATTGTCTCTAATAGAAGTCTACCCG</canonical_amplicon>
		<polymorphic_amplicon>AACTCACATTTGAGACATTTTGTTTGCTGACCCTCTGATTGGAAAAATCAAATAAAGAGAGTGATAAAAAAATTTTGGATCCAACTTGTACTTGTTTACCTCTTGCAGACATTTCTTCATAACGTGGAAGAAGCAGCGATCCGAAATGTCATATYCGTTTTTATGATACCCGACGATTGATGGATAGGTCTGAAAAATAACATTTTTTGTGTTAAGAATACGGTATTGTCTCTAATAGAAGTCTACCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14228</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>201472</contig_pos>
        <strand>+</strand>
        <context>TAATTCAGAA[A/G]TGTGAAATGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCCCTATTTAAATTAAATTAATCCTATTTGAGATCGAAATAATTCAGAA</left_flank>
        <right_flank>TGTGAAATGGAAAAGAGAGAACAAAAAACATTTTAACGAATGGAGACGCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACTTTCTGTCACACTTCTGGTTGTGTATATCTCACTGGTGTGACATGAAATCTCACTGATGTGGTGTCAGAAACGTCCATTTTCTTCCTTTTTTGTTTCACTTATTATTTATGCTTTTACAGTGTATGGTAACTCGATAAATAAGAGTAACAGAAACTCGATAAATAAGATCTACTAAAATGGAGAACTGTTAGTTAGAGAACTACTACAAATTCTGATTATTAATTTATTCGAGGATTTTTTTCTAGAACCTCTTGTAAATGTGCTCGAATGGAAACATACTGTAATGCTACAATAAACTAAAGTCTCGATGCGAAATCTTTACATTGCGATGTCTGCATTTCATCGGAAAACGCGCGAGAAAAAATTATTTTGCAAAATGTTCCGGAAAAAACACAGTGGCTTGTTGATGATTTACTCTAGGGGGGTTTATAAAGAAAAAAGATTATCCCTATTTAAATTAAATTAATCCTATTTGAGATCGAAATAATTCAGAAATGTGAAATGGAAAAGAGAGAACAAAAAACATTTTAACGAATGGAGACGCAGACAGATAGAAGAACAATCCTATGGCAAAGACAGACGATGGTGGTGAGCCGACGATTTCATAATCGAAGAAATTCGATTAAGGTCGACAAAATCGAGTAAAGTGATACAATGGAAAACTATTACTGAAATAGTTACGTATTCTTAAAGAAGAAGAAAAAAGTAACGCAGAACTGGCAATTAGCCATCAGCAAAAGGAAATGCGGCGGACAGCACACGGACGCCGCAACAGACAACGGGTGACGGGCGGACAATGGACAGCGATCTGCGTGGACTGTTCCGTTCATCTCTGTGTTTAGCATGTTAGATAAGATCTAGATCATAACAAAGTGTAACAACACAATTTGTATTAGAGGGGCACCTCTCTTCAAAGGGCATGCATTTAATACATGCATTTAATACTGTATTTTCATGATGTATTCTAATTTTGTGGTTCTTGACAAGATTCAGTC</canonical>
            <polymorphic>ACACTTTCTGTCACACTTCTGGTTGTGTATATCTCACTGGTGTGACATGAAATCTCACTGATGTGGTGTCAGAAACGTCCATTTTCTTCCTTTTTTGTTTCACTTATTATTTATGCTTTTACAGTGTATGGTAACTCGATAAATAAGAGTAACAGAAACTCGATAAATAAGATCTACTAAAATGGAGAACTGTTAGTTAGAGAACTACTACAAATTCTGATTATTAATTTATTCGAGGATTTTTTTCTAGAACCTCTTGTAAATGTGCTCGAATGGAAACATACTGTAATGCTACAATAAACTAAAGTCTCGATGCGAAATCTTTACATTGCGATGTCTGCATTTCATCGGAAAACGCGCGAGAAAAAATTATTTTGCAAAATGTTCCGGAAAAAACACAGTGGCTTGTTGATGATTTACTCTAGGGGGGTTTATAAAGAAAAAAGATTATCCCTATTTAAATTAAATTAATCCTATTTGAGATCGAAATAATTCAGAARTGTGAAATGGAAAAGAGAGAACAAAAAACATTTTAACGAATGGAGACGCAGACAGATAGAAGAACAATCCTATGGCAAAGACAGACGATGGTGGTGAGCCGACGATTTCATAATCGAAGAAATTCGATTAAGGTCGACAAAATCGAGTAAAGTGATACAATGGAAAACTATTACTGAAATAGTTACGTATTCTTAAAGAAGAAGAAAAAAGTAACGCAGAACTGGCAATTAGCCATCAGCAAAAGGAAATGCGGCGGACAGCACACGGACGCCGCAACAGACAACGGGTGACGGGCGGACAATGGACAGCGATCTGCGTGGACTGTTCCGTTCATCTCTGTGTTTAGCATGTTAGATAAGATCTAGATCATAACAAAGTGTAACAACACAATTTGTATTAGAGGGGCACCTCTCTTCAAAGGGCATGCATTTAATACATGCATTTAATACTGTATTTTCATGATGTATTCTAATTTTGTGGTTCTTGACAAGATTCAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTGTTGATGATTTACTCTAGG</pcr_primer_p1>
		<pcr_primer_p2>TACTCGATTTTGTCGACCTTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GCTTGTTGATGATTTACTCTAGGGGGGTTTATAAAGAAAAAAGATTATCCCTATTTAAATTAAATTAATCCTATTTGAGATCGAAATAATTCAGAAATGTGAAATGGAAAAGAGAGAACAAAAAACATTTTAACGAATGGAGACGCAGACAGATAGAAGAACAATCCTATGGCAAAGACAGACGATGGTGGTGAGCCGACGATTTCATAATCGAAGAAATTCGATTAAGGTCGACAAAATCGAGTA</canonical_amplicon>
		<polymorphic_amplicon>GCTTGTTGATGATTTACTCTAGGGGGGTTTATAAAGAAAAAAGATTATCCCTATTTAAATTAAATTAATCCTATTTGAGATCGAAATAATTCAGAARTGTGAAATGGAAAAGAGAGAACAAAAAACATTTTAACGAATGGAGACGCAGACAGATAGAAGAACAATCCTATGGCAAAGACAGACGATGGTGGTGAGCCGACGATTTCATAATCGAAGAAATTCGATTAAGGTCGACAAAATCGAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14229</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>206696</contig_pos>
        <strand>+</strand>
        <context>TCTTCACACC[A/T]CATCAATCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGCCCTATCATCAATCATGAGTTCGTCTATTTTCTTGCTTCTTCACACC</left_flank>
        <right_flank>CATCAATCATTTCAACTTCTTCTTGTTCTTCTTTTTCACCCCCTAATCTG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATAGTCATTCCTTCAGTCCACTCCAACTGAAAACCTAAATCATATTCTTTCCCAGGGTTGCGAAAACCGAATGGCCAATTATGGATTCCCGTGGCCAGAAATGTTGTCGTGCGACAAATTCGAAGACGACGACATGTGTATAAAGCCAATGCAAGAGGCCAAACCACCGGCAGGTCTGATTCTTTTGTTTATTCTTAAAGAGATTAGTGAAACTTGGGGATTCTCGAGAAAATATGCACTTTTGGTTTATATTCAAACTATTGGAAAAACATTTGAGAAAATGGCTCAAAAAATCTTTCTGCTTCATCTGGGAAGTTTGAGGACTGGGGTTCTTTCAAATATGTTGCTGCGCTTACTTGAAGATTAACAGTTCCGAAACTGTCGATCAGTCTAGTCGGCTCCATAACTGAAAACGAAAAAAAAAGAAGTTTCCAAATGTAATCATTATCAGCCCTATCATCAATCATGAGTTCGTCTATTTTCTTGCTTCTTCACACCTCATCAATCATTTCAACTTCTTCTTGTTCTTCTTTTTCACCCCCTAATCTGTCAAAATCACATGGACACTTCAAAGAGTTGCCGACAGAACAAAACGTCCATTGATGCATAACTTTTCGAGAAAAACCCGAAAACTTTTTCCCGCTCTTTTTTTCACACACTGGATACGAAAAAATCTGGACATTTAGTCTGGACATTTCCCTCTGATTCCTTTCAATGCGGGAGGGTCAAATTTCGAAGAAAAGAAGGAGGGGAAGAAGTGAGATAAGAAGAATATATTACAGTAATCGGAGAGAGAGAAGTGGAAAATGTAAAAGTATTCGATTTCAGGTAGCACCACAACGTGCACGGCGTGCTCGCAAGTCGCCACCTACGAGAATCTTGTCGATCAGTTTTGTAGATCAAATTTGGGTACGTTGAGGAAAGAGAAACAAAGGACTGAGGGAAGATGTAAAATCGAAAAATTAAAAATGACATAGTTGGAGTCCCACTTTGGATCGG</canonical>
            <polymorphic>CATAGTCATTCCTTCAGTCCACTCCAACTGAAAACCTAAATCATATTCTTTCCCAGGGTTGCGAAAACCGAATGGCCAATTATGGATTCCCGTGGCCAGAAATGTTGTCGTGCGACAAATTCGAAGACGACGACATGTGTATAAAGCCAATGCAAGAGGCCAAACCACCGGCAGGTCTGATTCTTTTGTTTATTCTTAAAGAGATTAGTGAAACTTGGGGATTCTCGAGAAAATATGCACTTTTGGTTTATATTCAAACTATTGGAAAAACATTTGAGAAAATGGCTCAAAAAATCTTTCTGCTTCATCTGGGAAGTTTGAGGACTGGGGTTCTTTCAAATATGTTGCTGCGCTTACTTGAAGATTAACAGTTCCGAAACTGTCGATCAGTCTAGTCGGCTCCATAACTGAAAACGAAAAAAAAAGAAGTTTCCAAATGTAATCATTATCAGCCCTATCATCAATCATGAGTTCGTCTATTTTCTTGCTTCTTCACACCWCATCAATCATTTCAACTTCTTCTTGTTCTTCTTTTTCACCCCCTAATCTGTCAAAATCACATGGACACTTCAAAGAGTTGCCGACAGAACAAAACGTCCATTGATGCATAACTTTTCGAGAAAAACCCGAAAACTTTTTCCCGCTCTTTTTTTCACACACTGGATACGAAAAAATCTGGACATTTAGTCTGGACATTTCCCTCTGATTCCTTTCAATGCGGGAGGGTCAAATTTCGAAGAAAAGAAGGAGGGGAAGAAGTGAGATAAGAAGAATATATTACAGTAATCGGAGAGAGAGAAGTGGAAAATGTAAAAGTATTCGATTTCAGGTAGCACCACAACGTGCACGGCGTGCTCGCAAGTCGCCACCTACGAGAATCTTGTCGATCAGTTTTGTAGATCAAATTTGGGTACGTTGAGGAAAGAGAAACAAAGGACTGAGGGAAGATGTAAAATCGAAAAATTAAAAATGACATAGTTGGAGTCCCACTTTGGATCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAAGTTTCCAAATGTAATCA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCGTATCCAGTGTGTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGAAGTTTCCAAATGTAATCATTATCAGCCCTATCATCAATCATGAGTTCGTCTATTTTCTTGCTTCTTCACACCTCATCAATCATTTCAACTTCTTCTTGTTCTTCTTTTTCACCCCCTAATCTGTCAAAATCACATGGACACTTCAAAGAGTTGCCGACAGAACAAAACGTCCATTGATGCATAACTTTTCGAGAAAAACCCGAAAACTTTTTCCCGCTCTTTTTTTCACACACTGGATACGAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAGAAGTTTCCAAATGTAATCATTATCAGCCCTATCATCAATCATGAGTTCGTCTATTTTCTTGCTTCTTCACACCWCATCAATCATTTCAACTTCTTCTTGTTCTTCTTTTTCACCCCCTAATCTGTCAAAATCACATGGACACTTCAAAGAGTTGCCGACAGAACAAAACGTCCATTGATGCATAACTTTTCGAGAAAAACCCGAAAACTTTTTCCCGCTCTTTTTTTCACACACTGGATACGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14230</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>234512</contig_pos>
        <strand>+</strand>
        <context>AAAAATAGTT[A/G]GGTTCAGGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGGGAAGGTGAACGGCAGTTTTCGTTGAACCAGGGACATAAAAATAGTT</left_flank>
        <right_flank>GGTTCAGGAAAATATGTCGATCTGGGTTTTAGGAAATATAAAACCGTATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTTTTTTCTCACTTACACGCACCTTCTCGAATATCATTGAAAGAAAGTAAGTGTGGTCCCCACCCGAAGAACATCTCGAATTTCGTCACACCTGCATCTTCTCACATTTTCAATTGAGAATGAAAGAGGAGGACTATATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTGATGACACAACAATCCCTATCCCAGAAACACTATACCAAAAAAGCCGTGTATATGTTCTCACCCCTGGAATTGTGGCGCTGCAACGACACAACGACAAAGGCGAATTTGATTAACGCCACGGAGAATATTGGGGGCGAAAGAGAGCGGCGGGGAGGCTTGATTGATTTTGGTTTTGGTAGCAGCAGAGTTCGGAACGTCGCTCCCGCTAGAAAACAAAAACAACAATAATCGGATTTAGTTCAACAACGACTACTAAAACGTTGAGACACTGGGAAGGTGAACGGCAGTTTTCGTTGAACCAGGGACATAAAAATAGTTGGGTTCAGGAAAATATGTCGATCTGGGTTTTAGGAAATATAAAACCGTATCGGTATTCAGGTAGGCATTGAGTACTGTAGCGCAATTTTCTGATTACGGTTATGTTATCAAAGGATCTCTAGGATCTAAGATCTAGGAGCTAGATTTAGGAGAATTTGTAGAAGTTAGGATCCAGGATTTGGGATCTAAGTTCTCTAGGATATAGAATTTTTAAGAACCAAGATCTCTAGTTCAAGTCTCTATGGCTGATTTCGAATTATCAAATGTCGTCTTCTTCGGTTTCCTGGAAGCTTCTAGAATCTGTGGTTGGAAGAATCAAGATTAGAATTATAAACTAGCCCTCTAGACTTAATTCCTCAGATGGGACTTTTCTGAAAAACCTTCCATGTTCAGTTTTCTCAATCTGGATTCCAGAGTCTGGAATCTCCCCTATGTTATTTCCTATACATCCTCCTCCTGAGTGCAACAATCCCATTTGTCTCCTCCTTGTCATTATGATCA</canonical>
            <polymorphic>CACTTTTTTCTCACTTACACGCACCTTCTCGAATATCATTGAAAGAAAGTAAGTGTGGTCCCCACCCGAAGAACATCTCGAATTTCGTCACACCTGCATCTTCTCACATTTTCAATTGAGAATGAAAGAGGAGGACTATATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTGATGACACAACAATCCCTATCCCAGAAACACTATACCAAAAAAGCCGTGTATATGTTCTCACCCCTGGAATTGTGGCGCTGCAACGACACAACGACAAAGGCGAATTTGATTAACGCCACGGAGAATATTGGGGGCGAAAGAGAGCGGCGGGGAGGCTTGATTGATTTTGGTTTTGGTAGCAGCAGAGTTCGGAACGTCGCTCCCGCTAGAAAACAAAAACAACAATAATCGGATTTAGTTCAACAACGACTACTAAAACGTTGAGACACTGGGAAGGTGAACGGCAGTTTTCGTTGAACCAGGGACATAAAAATAGTTRGGTTCAGGAAAATATGTCGATCTGGGTTTTAGGAAATATAAAACCGTATCGGTATTCAGGTAGGCATTGAGTACTGTAGCGCAATTTTCTGATTACGGTTATGTTATCAAAGGATCTCTAGGATCTAAGATCTAGGAGCTAGATTTAGGAGAATTTGTAGAAGTTAGGATCCAGGATTTGGGATCTAAGTTCTCTAGGATATAGAATTTTTAAGAACCAAGATCTCTAGTTCAAGTCTCTATGGCTGATTTCGAATTATCAAATGTCGTCTTCTTCGGTTTCCTGGAAGCTTCTAGAATCTGTGGTTGGAAGAATCAAGATTAGAATTATAAACTAGCCCTCTAGACTTAATTCCTCAGATGGGACTTTTCTGAAAAACCTTCCATGTTCAGTTTTCTCAATCTGGATTCCAGAGTCTGGAATCTCCCCTATGTTATTTCCTATACATCCTCCTCCTGAGTGCAACAATCCCATTTGTCTCCTCCTTGTCATTATGATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGGTAGCAGCAGAGTTC</pcr_primer_p1>
		<pcr_primer_p2>ACATAACCGTAATCAGAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTTTGGTAGCAGCAGAGTTCGGAACGTCGCTCCCGCTAGAAAACAAAAACAACAATAATCGGATTTAGTTCAACAACGACTACTAAAACGTTGAGACACTGGGAAGGTGAACGGCAGTTTTCGTTGAACCAGGGACATAAAAATAGTTGGGTTCAGGAAAATATGTCGATCTGGGTTTTAGGAAATATAAAACCGTATCGGTATTCAGGTAGGCATTGAGTACTGTAGCGCAATTTTCTGATTACGGTTATGT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGGTAGCAGCAGAGTTCGGAACGTCGCTCCCGCTAGAAAACAAAAACAACAATAATCGGATTTAGTTCAACAACGACTACTAAAACGTTGAGACACTGGGAAGGTGAACGGCAGTTTTCGTTGAACCAGGGACATAAAAATAGTTRGGTTCAGGAAAATATGTCGATCTGGGTTTTAGGAAATATAAAACCGTATCGGTATTCAGGTAGGCATTGAGTACTGTAGCGCAATTTTCTGATTACGGTTATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14231</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>237166</contig_pos>
        <strand>+</strand>
        <context>TTCAGAGTTT[A/G]GAATTCCAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGGTTTTAAGTGAGTCAGACTTTTGAAAATAGAAGAGGATTCAGAGTTT</left_flank>
        <right_flank>GAATTCCAAAAATTCTGAAAAAAAGTACCCTTACTATTACCGTAAAACCT</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTCGCACTCTTCTACTCTTACTCCGACGTCTTCTTCTCCTTCTTCTGAATTCATATTCAGTTTTGTCCCTGTCTTCGGGTCCCCCGAGGCGGTCCTCTTCGAAACTCAAGAAGAATTGGAAAAATTCAAGAAGAGAGAGAGAGAGAATTTTTCAAAAAGAAAGACTCACTTTCTAAAGAAATAAAAACAGAACGAGAGGGGCAAAACACTCAAAAAAAGTTGCTCTAATGGGTTCTTCTGGGTGCGATTTTAAGGCACTGAGTGATTTTGGGGCCGCCTAATTAAAGTAATGCATGTGTGGGCTAAAGAATGACACTCTCCAGATTTATGACTGATACTTTTTGGCGTCTCCAGAAGTAGCTTGGGTTTAAGTGGGTAGTTCAAGTCCATTAGGAATTCAAGGAGAGAGAACTTTTTTGAAATCAGAGTGCTTTAGGTCGATGGGTTTTTGGTTTTAAGTGAGTCAGACTTTTGAAAATAGAAGAGGATTCAGAGTTTGGAATTCCAAAAATTCTGAAAAAAAGTACCCTTACTATTACCGTAAAACCTGTAATACAAGGGCTCCTTAAATTTTAACTTTGAGCCAATATTTCTTAGTTTTTGTCAAAGATATAGAAACGGTTAAAATGTCAACGGATAAAATGTTTAAGATGATAACACCAACATCTTATCAGTTAACACATTTTTGATATCTTGCATAGAATCCAAGAAAAATTATCTCAAACTTGACAGTGTGGGGGCCCCTTCTATTACAGGTTTGGGTATTTTTTGGCTCCCCGTCAATTCGAAACCAGGCATTTTGAAACCGTGGTAATGCAGGCGATGGATAAGTTTCAAACTACGAAAACAATTTTGGTGGTTTTAAATATGCTTTTTCTGATAGAACACATTCTGAAAATCGAAAAAACCCCAAAATTTGATGTACTCGAAAGAAGAAAAATTCTCGATTTTTTCGATTTTCAGAATGTGTTGTATCAGAAACAGCAACTGACTCGTTTC</canonical>
            <polymorphic>CGTCGCACTCTTCTACTCTTACTCCGACGTCTTCTTCTCCTTCTTCTGAATTCATATTCAGTTTTGTCCCTGTCTTCGGGTCCCCCGAGGCGGTCCTCTTCGAAACTCAAGAAGAATTGGAAAAATTCAAGAAGAGAGAGAGAGAGAATTTTTCAAAAAGAAAGACTCACTTTCTAAAGAAATAAAAACAGAACGAGAGGGGCAAAACACTCAAAAAAAGTTGCTCTAATGGGTTCTTCTGGGTGCGATTTTAAGGCACTGAGTGATTTTGGGGCCGCCTAATTAAAGTAATGCATGTGTGGGCTAAAGAATGACACTCTCCAGATTTATGACTGATACTTTTTGGCGTCTCCAGAAGTAGCTTGGGTTTAAGTGGGTAGTTCAAGTCCATTAGGAATTCAAGGAGAGAGAACTTTTTTGAAATCAGAGTGCTTTAGGTCGATGGGTTTTTGGTTTTAAGTGAGTCAGACTTTTGAAAATAGAAGAGGATTCAGAGTTTRGAATTCCAAAAATTCTGAAAAAAAGTACCCTTACTATTACCGTAAAACCTGTAATACAAGGGCTCCTTAAATTTTAACTTTGAGCCAATATTTCTTAGTTTTTGTCAAAGATATAGAAACGGTTAAAATGTCAACGGATAAAATGTTTAAGATGATAACACCAACATCTTATCAGTTAACACATTTTTGATATCTTGCATAGAATCCAAGAAAAATTATCTCAAACTTGACAGTGTGGGGGCCCCTTCTATTACAGGTTTGGGTATTTTTTGGCTCCCCGTCAATTCGAAACCAGGCATTTTGAAACCGTGGTAATGCAGGCGATGGATAAGTTTCAAACTACGAAAACAATTTTGGTGGTTTTAAATATGCTTTTTCTGATAGAACACATTCTGAAAATCGAAAAAACCCCAAAATTTGATGTACTCGAAAGAAGAAAAATTCTCGATTTTTTCGATTTTCAGAATGTGTTGTATCAGAAACAGCAACTGACTCGTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGGTTTTAAGTGAGTCAGA</pcr_primer_p1>
		<pcr_primer_p2>ATTACCACGGTTTCAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>370</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGGTTTTAAGTGAGTCAGACTTTTGAAAATAGAAGAGGATTCAGAGTTTGGAATTCCAAAAATTCTGAAAAAAAGTACCCTTACTATTACCGTAAAACCTGTAATACAAGGGCTCCTTAAATTTTAACTTTGAGCCAATATTTCTTAGTTTTTGTCAAAGATATAGAAACGGTTAAAATGTCAACGGATAAAATGTTTAAGATGATAACACCAACATCTTATCAGTTAACACATTTTTGATATCTTGCATAGAATCCAAGAAAAATTATCTCAAACTTGACAGTGTGGGGGCCCCTTCTATTACAGGTTTGGGTATTTTTTGGCTCCCCGTCAATTCGAAACCAGGCATTTTGAAACCGTGGTAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGGTTTTAAGTGAGTCAGACTTTTGAAAATAGAAGAGGATTCAGAGTTTRGAATTCCAAAAATTCTGAAAAAAAGTACCCTTACTATTACCGTAAAACCTGTAATACAAGGGCTCCTTAAATTTTAACTTTGAGCCAATATTTCTTAGTTTTTGTCAAAGATATAGAAACGGTTAAAATGTCAACGGATAAAATGTTTAAGATGATAACACCAACATCTTATCAGTTAACACATTTTTGATATCTTGCATAGAATCCAAGAAAAATTATCTCAAACTTGACAGTGTGGGGGCCCCTTCTATTACAGGTTTGGGTATTTTTTGGCTCCCCGTCAATTCGAAACCAGGCATTTTGAAACCGTGGTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14232</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>263257</contig_pos>
        <strand>+</strand>
        <context>ACGGTATCTC[C/G]GTTGTGTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCAAAGCTGCCATTTTTTCCAGATTTCCAGACACTAAACTACGGTATCTC</left_flank>
        <right_flank>GTTGTGTTTCTTCTCTGAAACCCGCCGGAAATCTAGATAAACTTCTTATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATGTGGGCCGCACGAAAATAAACGTTTCCAGGACAAGGGTGTGGTGTTGATCGTTTGACCCGGAGTACCACTTCCTGGAACGAATGGATTGAGGGCGAATGAGACTTAGAAGTAGGCTTGAAACCGAGAACTGATTTCAACGAAATGGAATTTCAACTTTTTAAATAATTACAGTTACAGACATGTATGCTTCTTTGTGAGATCAATGTTTTGAATTTTAAAAATCACTCACACATTTTCTCCTCGAATAATGTAGAGTCCCAGCGGTGTGATTAGAACTCCGTCTGTCTCTGAATAACACCGTTCGTGGGCATCTTCGATGACCAGGTTGATTAATTGATCGAATCCCTGTAAAATCGACATTTTTTGTTTAGAAATTTGAAAAAATGGCTCGAAATACCGTGTCCAAAGCAAATTTCAAGGATACATTTCTTAGGAAAACGTTACCCAAAGCTGCCATTTTTTCCAGATTTCCAGACACTAAACTACGGTATCTCCGTTGTGTTTCTTCTCTGAAACCCGCCGGAAATCTAGATAAACTTCTTATTTTTTGATGGTTTCGTAGAAAAAAACACAAAACAAATCGATTGATATCGTAGTTTTGGCAGCTTTGGGCAACGTTTCAATGAGAAAATTTTTCTAGAAATTCACCTGGACGCGGCAAAACTCTAAGCTGTTTGAAAAAAAAGTGGGAAGCAATACTATCGTACTGATTTTCTTTCGAAAATTCTTTTCAAACTTATCAATAACGATGTTTTTTCAATAACCCATGTGCTACCTTGAGAAGCCCGACGATTACTCGTCCGTCTCCAGTGACGACGTTCACCATGCGGTTCATATATGATTCAAGAGTTGATGTCATTTTTCTGTTCTGCAATTAACCCGATAAGCACAAATTCATCTCTATCGCAATTCTTCAGATATATTCACACGGAAACTCACCTGTTCTTTCAAACATTTTGTTGAAAATAAGAACAATTAGATATCTTTGGCAATAT</canonical>
            <polymorphic>GGATGTGGGCCGCACGAAAATAAACGTTTCCAGGACAAGGGTGTGGTGTTGATCGTTTGACCCGGAGTACCACTTCCTGGAACGAATGGATTGAGGGCGAATGAGACTTAGAAGTAGGCTTGAAACCGAGAACTGATTTCAACGAAATGGAATTTCAACTTTTTAAATAATTACAGTTACAGACATGTATGCTTCTTTGTGAGATCAATGTTTTGAATTTTAAAAATCACTCACACATTTTCTCCTCGAATAATGTAGAGTCCCAGCGGTGTGATTAGAACTCCGTCTGTCTCTGAATAACACCGTTCGTGGGCATCTTCGATGACCAGGTTGATTAATTGATCGAATCCCTGTAAAATCGACATTTTTTGTTTAGAAATTTGAAAAAATGGCTCGAAATACCGTGTCCAAAGCAAATTTCAAGGATACATTTCTTAGGAAAACGTTACCCAAAGCTGCCATTTTTTCCAGATTTCCAGACACTAAACTACGGTATCTCSGTTGTGTTTCTTCTCTGAAACCCGCCGGAAATCTAGATAAACTTCTTATTTTTTGATGGTTTCGTAGAAAAAAACACAAAACAAATCGATTGATATCGTAGTTTTGGCAGCTTTGGGCAACGTTTCAATGAGAAAATTTTTCTAGAAATTCACCTGGACGCGGCAAAACTCTAAGCTGTTTGAAAAAAAAGTGGGAAGCAATACTATCGTACTGATTTTCTTTCGAAAATTCTTTTCAAACTTATCAATAACGATGTTTTTTCAATAACCCATGTGCTACCTTGAGAAGCCCGACGATTACTCGTCCGTCTCCAGTGACGACGTTCACCATGCGGTTCATATATGATTCAAGAGTTGATGTCATTTTTCTGTTCTGCAATTAACCCGATAAGCACAAATTCATCTCTATCGCAATTCTTCAGATATATTCACACGGAAACTCACCTGTTCTTTCAAACATTTTGTTGAAAATAAGAACAATTAGATATCTTTGGCAATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATCCCTGTAAAATCGACAT</pcr_primer_p1>
		<pcr_primer_p2>ATATCAATCGATTTGTTTTGTGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GAATCCCTGTAAAATCGACATTTTTTGTTTAGAAATTTGAAAAAATGGCTCGAAATACCGTGTCCAAAGCAAATTTCAAGGATACATTTCTTAGGAAAACGTTACCCAAAGCTGCCATTTTTTCCAGATTTCCAGACACTAAACTACGGTATCTCCGTTGTGTTTCTTCTCTGAAACCCGCCGGAAATCTAGATAAACTTCTTATTTTTTGATGGTTTCGTAGAAAAAAACACAAAACAAATCGATTGATAT</canonical_amplicon>
		<polymorphic_amplicon>GAATCCCTGTAAAATCGACATTTTTTGTTTAGAAATTTGAAAAAATGGCTCGAAATACCGTGTCCAAAGCAAATTTCAAGGATACATTTCTTAGGAAAACGTTACCCAAAGCTGCCATTTTTTCCAGATTTCCAGACACTAAACTACGGTATCTCSGTTGTGTTTCTTCTCTGAAACCCGCCGGAAATCTAGATAAACTTCTTATTTTTTGATGGTTTCGTAGAAAAAAACACAAAACAAATCGATTGATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14233</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>263396</contig_pos>
        <strand>+</strand>
        <context>TGAGAAAATT[C/T]TTCTAGAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGATATCGTAGTTTTGGCAGCTTTGGGCAACGTTTCAATGAGAAAATT</left_flank>
        <right_flank>TTCTAGAAATTCACCTGGACGCGGCAAAACTCTAAGCTGTTTGAAAAAAA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACGAAATGGAATTTCAACTTTTTAAATAATTACAGTTACAGACATGTATGCTTCTTTGTGAGATCAATGTTTTGAATTTTAAAAATCACTCACACATTTTCTCCTCGAATAATGTAGAGTCCCAGCGGTGTGATTAGAACTCCGTCTGTCTCTGAATAACACCGTTCGTGGGCATCTTCGATGACCAGGTTGATTAATTGATCGAATCCCTGTAAAATCGACATTTTTTGTTTAGAAATTTGAAAAAATGGCTCGAAATACCGTGTCCAAAGCAAATTTCAAGGATACATTTCTTAGGAAAACGTTACCCAAAGCTGCCATTTTTTCCAGATTTCCAGACACTAAACTACGGTATCTCCGTTGTGTTTCTTCTCTGAAACCCGCCGGAAATCTAGATAAACTTCTTATTTTTTGATGGTTTCGTAGAAAAAAACACAAAACAAATCGATTGATATCGTAGTTTTGGCAGCTTTGGGCAACGTTTCAATGAGAAAATTTTTCTAGAAATTCACCTGGACGCGGCAAAACTCTAAGCTGTTTGAAAAAAAAGTGGGAAGCAATACTATCGTACTGATTTTCTTTCGAAAATTCTTTTCAAACTTATCAATAACGATGTTTTTTCAATAACCCATGTGCTACCTTGAGAAGCCCGACGATTACTCGTCCGTCTCCAGTGACGACGTTCACCATGCGGTTCATATATGATTCAAGAGTTGATGTCATTTTTCTGTTCTGCAATTAACCCGATAAGCACAAATTCATCTCTATCGCAATTCTTCAGATATATTCACACGGAAACTCACCTGTTCTTTCAAACATTTTGTTGAAAATAAGAACAATTAGATATCTTTGGCAATATAGTAACTAGTCCTCAAAAATTTCATTCTCAGCTTAATATCAACACATGTTTGACATGAATCAATCATACATTTGAATAGTGAACGACAAATTCTGTGTCAAACACTGATGCAGTCATTAGAATCGGTTTGGGGGTTTAC</canonical>
            <polymorphic>CAACGAAATGGAATTTCAACTTTTTAAATAATTACAGTTACAGACATGTATGCTTCTTTGTGAGATCAATGTTTTGAATTTTAAAAATCACTCACACATTTTCTCCTCGAATAATGTAGAGTCCCAGCGGTGTGATTAGAACTCCGTCTGTCTCTGAATAACACCGTTCGTGGGCATCTTCGATGACCAGGTTGATTAATTGATCGAATCCCTGTAAAATCGACATTTTTTGTTTAGAAATTTGAAAAAATGGCTCGAAATACCGTGTCCAAAGCAAATTTCAAGGATACATTTCTTAGGAAAACGTTACCCAAAGCTGCCATTTTTTCCAGATTTCCAGACACTAAACTACGGTATCTCCGTTGTGTTTCTTCTCTGAAACCCGCCGGAAATCTAGATAAACTTCTTATTTTTTGATGGTTTCGTAGAAAAAAACACAAAACAAATCGATTGATATCGTAGTTTTGGCAGCTTTGGGCAACGTTTCAATGAGAAAATTYTTCTAGAAATTCACCTGGACGCGGCAAAACTCTAAGCTGTTTGAAAAAAAAGTGGGAAGCAATACTATCGTACTGATTTTCTTTCGAAAATTCTTTTCAAACTTATCAATAACGATGTTTTTTCAATAACCCATGTGCTACCTTGAGAAGCCCGACGATTACTCGTCCGTCTCCAGTGACGACGTTCACCATGCGGTTCATATATGATTCAAGAGTTGATGTCATTTTTCTGTTCTGCAATTAACCCGATAAGCACAAATTCATCTCTATCGCAATTCTTCAGATATATTCACACGGAAACTCACCTGTTCTTTCAAACATTTTGTTGAAAATAAGAACAATTAGATATCTTTGGCAATATAGTAACTAGTCCTCAAAAATTTCATTCTCAGCTTAATATCAACACATGTTTGACATGAATCAATCATACATTTGAATAGTGAACGACAAATTCTGTGTCAAACACTGATGCAGTCATTAGAATCGGTTTGGGGGTTTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>219 169 162 121 81 71 65 51 38 12 11</canonical_bands>
                <polymorphic_bands>231 169 162 121 81 71 65 51 38 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCAGACACTAAACTACGGTATC</pcr_primer_p1>
		<pcr_primer_p2>TCGAAAGAAAATCAGTACGATAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCCAGACACTAAACTACGGTATCTCCGTTGTGTTTCTTCTCTGAAACCCGCCGGAAATCTAGATAAACTTCTTATTTTTTGATGGTTTCGTAGAAAAAAACACAAAACAAATCGATTGATATCGTAGTTTTGGCAGCTTTGGGCAACGTTTCAATGAGAAAATTTTTCTAGAAATTCACCTGGACGCGGCAAAACTCTAAGCTGTTTGAAAAAAAAGTGGGAAGCAATACTATCGTACTGATTTTCTTTCGA</canonical_amplicon>
		<polymorphic_amplicon>TCCAGACACTAAACTACGGTATCTCCGTTGTGTTTCTTCTCTGAAACCCGCCGGAAATCTAGATAAACTTCTTATTTTTTGATGGTTTCGTAGAAAAAAACACAAAACAAATCGATTGATATCGTAGTTTTGGCAGCTTTGGGCAACGTTTCAATGAGAAAATTYTTCTAGAAATTCACCTGGACGCGGCAAAACTCTAAGCTGTTTGAAAAAAAAGTGGGAAGCAATACTATCGTACTGATTTTCTTTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14234</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>268384</contig_pos>
        <strand>+</strand>
        <context>TAATCTGGAT[G/T]TTCAGAGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTATTGGTTATCACCTGGTTCCCCGCTGAGTTTAGTTGTAATCTGGAT</left_flank>
        <right_flank>TTCAGAGTTTTCTTCCTTTTGAGAGAATCTACCTTGGTCTTTGAGCATTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCACCTTTCGCCATTTCGGGAAATTTCGATCCATCGTAACGGATCCAAAACAAATATCGCCGAATTTCCCTCATGATTTCAGTTGTTTCAGTGATTATTTTCAAATGATGAGTTCTCCGAGAGGACTACACGGCAAACAGTTTCAGGCGGCCTAGGTTCAGCAGATGTCTGTGTCTCATCAATTTGTATTGTGTCTTTGAGGAAAAAGAAGAGCGAAGTTTGAAATGGTCTTTAAATGCAAGAATTTTATTCAGAAGATCGAAAGGGTATTGAGTGATAATTTCAGATTTTAGCTTGGCTTCACCGCTTCAGCAGACCATTTCCAACTTGATTCCTTTGTCATCTTTTTTCCAAAAAAGGTTCCTCCTTCCTCCACATTTGATCAGCTATAAATTTTGTTTTGCTTCTCTTAAAATTTGTGGTGTTTGAAAAATGAAGACTGCGAAAAAATTATTGGTTATCACCTGGTTCCCCGCTGAGTTTAGTTGTAATCTGGATTTTCAGAGTTTTCTTCCTTTTGAGAGAATCTACCTTGGTCTTTGAGCATTTCTTCAGCATAATTTCAGATTCTAAATATCCTCTACAGTGGATTCCCACATCACTTTATCCGTGATCTTCAAGATGCCAAATTGCTCCGAATGATTTCATGGCTTTGTTGACAGTTGGCACAAAGCTATAATTGTCCATTTCCATTACCCCATGATCCAAAACGTCAGACACATTTTTGCATTTTTTCTGCTCTCCAAAAATTTAGTTAAGTTCCAAAAAGAGCATTGATTGAGGTCTAAAATTTTTTCATATATTCTGAAGATGATTTCAGGTGTTCCATGGAATTCTAGATATTTTCAGAAACAAATAACAGATGATTTTCATTTTTGTAGTCATTATTTTTCAGTTTTCTCCGTTTTCTCAAGTTATTTAAATTTTTCTAGTTATAACCATGAGAAAAGTTATTTGAGCTTCAAGAATTCTATAAATATTTCAGATGAGTTCTCCGTC</canonical>
            <polymorphic>TCCACCTTTCGCCATTTCGGGAAATTTCGATCCATCGTAACGGATCCAAAACAAATATCGCCGAATTTCCCTCATGATTTCAGTTGTTTCAGTGATTATTTTCAAATGATGAGTTCTCCGAGAGGACTACACGGCAAACAGTTTCAGGCGGCCTAGGTTCAGCAGATGTCTGTGTCTCATCAATTTGTATTGTGTCTTTGAGGAAAAAGAAGAGCGAAGTTTGAAATGGTCTTTAAATGCAAGAATTTTATTCAGAAGATCGAAAGGGTATTGAGTGATAATTTCAGATTTTAGCTTGGCTTCACCGCTTCAGCAGACCATTTCCAACTTGATTCCTTTGTCATCTTTTTTCCAAAAAAGGTTCCTCCTTCCTCCACATTTGATCAGCTATAAATTTTGTTTTGCTTCTCTTAAAATTTGTGGTGTTTGAAAAATGAAGACTGCGAAAAAATTATTGGTTATCACCTGGTTCCCCGCTGAGTTTAGTTGTAATCTGGATKTTCAGAGTTTTCTTCCTTTTGAGAGAATCTACCTTGGTCTTTGAGCATTTCTTCAGCATAATTTCAGATTCTAAATATCCTCTACAGTGGATTCCCACATCACTTTATCCGTGATCTTCAAGATGCCAAATTGCTCCGAATGATTTCATGGCTTTGTTGACAGTTGGCACAAAGCTATAATTGTCCATTTCCATTACCCCATGATCCAAAACGTCAGACACATTTTTGCATTTTTTCTGCTCTCCAAAAATTTAGTTAAGTTCCAAAAAGAGCATTGATTGAGGTCTAAAATTTTTTCATATATTCTGAAGATGATTTCAGGTGTTCCATGGAATTCTAGATATTTTCAGAAACAAATAACAGATGATTTTCATTTTTGTAGTCATTATTTTTCAGTTTTCTCCGTTTTCTCAAGTTATTTAAATTTTTCTAGTTATAACCATGAGAAAAGTTATTTGAGCTTCAAGAATTCTATAAATATTTCAGATGAGTTCTCCGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTTGATTCCTTTGTCATCTTT</pcr_primer_p1>
		<pcr_primer_p2>AGAATCTGAAATTATGCTGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AACTTGATTCCTTTGTCATCTTTTTTCCAAAAAAGGTTCCTCCTTCCTCCACATTTGATCAGCTATAAATTTTGTTTTGCTTCTCTTAAAATTTGTGGTGTTTGAAAAATGAAGACTGCGAAAAAATTATTGGTTATCACCTGGTTCCCCGCTGAGTTTAGTTGTAATCTGGATTTTCAGAGTTTTCTTCCTTTTGAGAGAATCTACCTTGGTCTTTGAGCATTTCTTCAGCATAATTTCAGATTCT</canonical_amplicon>
		<polymorphic_amplicon>AACTTGATTCCTTTGTCATCTTTTTTCCAAAAAAGGTTCCTCCTTCCTCCACATTTGATCAGCTATAAATTTTGTTTTGCTTCTCTTAAAATTTGTGGTGTTTGAAAAATGAAGACTGCGAAAAAATTATTGGTTATCACCTGGTTCCCCGCTGAGTTTAGTTGTAATCTGGATKTTCAGAGTTTTCTTCCTTTTGAGAGAATCTACCTTGGTCTTTGAGCATTTCTTCAGCATAATTTCAGATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14235</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>268118</contig_pos>
        <strand>+</strand>
        <context>AAATGGTCTT[A/T]AAATGCAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGTATTGTGTCTTTGAGGAAAAAGAAGAGCGAAGTTTGAAATGGTCTT</left_flank>
        <right_flank>AAATGCAAGAATTTTATTCAGAAGATCGAAAGGGTATTGAGTGATAATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGAATTCCAATGGAACCTGAAACGAAGGATATTGATGAAACAAGCCAGGCAAAATTTACCTGGCAAATTACGGAACTTCGAATCGCATGAACTTTTGCATCAGTTCGACTGCTTGGAGAAAACTTCAATTTATCCTTTTGCTCTGGGTGTTGCTCTCTTCGCGGTCCGAATATCGACTGTGACACTGTCTGAAAAACAATTACCAAGCTTGTTCGATTTCCTAATGTAAAACCTGATTTAGAAGATCCATAACACCGAATCCGGTTCCACCTTTCGCCATTTCGGGAAATTTCGATCCATCGTAACGGATCCAAAACAAATATCGCCGAATTTCCCTCATGATTTCAGTTGTTTCAGTGATTATTTTCAAATGATGAGTTCTCCGAGAGGACTACACGGCAAACAGTTTCAGGCGGCCTAGGTTCAGCAGATGTCTGTGTCTCATCAATTTGTATTGTGTCTTTGAGGAAAAAGAAGAGCGAAGTTTGAAATGGTCTTTAAATGCAAGAATTTTATTCAGAAGATCGAAAGGGTATTGAGTGATAATTTCAGATTTTAGCTTGGCTTCACCGCTTCAGCAGACCATTTCCAACTTGATTCCTTTGTCATCTTTTTTCCAAAAAAGGTTCCTCCTTCCTCCACATTTGATCAGCTATAAATTTTGTTTTGCTTCTCTTAAAATTTGTGGTGTTTGAAAAATGAAGACTGCGAAAAAATTATTGGTTATCACCTGGTTCCCCGCTGAGTTTAGTTGTAATCTGGATTTTCAGAGTTTTCTTCCTTTTGAGAGAATCTACCTTGGTCTTTGAGCATTTCTTCAGCATAATTTCAGATTCTAAATATCCTCTACAGTGGATTCCCACATCACTTTATCCGTGATCTTCAAGATGCCAAATTGCTCCGAATGATTTCATGGCTTTGTTGACAGTTGGCACAAAGCTATAATTGTCCATTTCCATTACCCCATGATCCAAAACGTCAGACACATTTTTGCATTTT</canonical>
            <polymorphic>GCGAATTCCAATGGAACCTGAAACGAAGGATATTGATGAAACAAGCCAGGCAAAATTTACCTGGCAAATTACGGAACTTCGAATCGCATGAACTTTTGCATCAGTTCGACTGCTTGGAGAAAACTTCAATTTATCCTTTTGCTCTGGGTGTTGCTCTCTTCGCGGTCCGAATATCGACTGTGACACTGTCTGAAAAACAATTACCAAGCTTGTTCGATTTCCTAATGTAAAACCTGATTTAGAAGATCCATAACACCGAATCCGGTTCCACCTTTCGCCATTTCGGGAAATTTCGATCCATCGTAACGGATCCAAAACAAATATCGCCGAATTTCCCTCATGATTTCAGTTGTTTCAGTGATTATTTTCAAATGATGAGTTCTCCGAGAGGACTACACGGCAAACAGTTTCAGGCGGCCTAGGTTCAGCAGATGTCTGTGTCTCATCAATTTGTATTGTGTCTTTGAGGAAAAAGAAGAGCGAAGTTTGAAATGGTCTTWAAATGCAAGAATTTTATTCAGAAGATCGAAAGGGTATTGAGTGATAATTTCAGATTTTAGCTTGGCTTCACCGCTTCAGCAGACCATTTCCAACTTGATTCCTTTGTCATCTTTTTTCCAAAAAAGGTTCCTCCTTCCTCCACATTTGATCAGCTATAAATTTTGTTTTGCTTCTCTTAAAATTTGTGGTGTTTGAAAAATGAAGACTGCGAAAAAATTATTGGTTATCACCTGGTTCCCCGCTGAGTTTAGTTGTAATCTGGATTTTCAGAGTTTTCTTCCTTTTGAGAGAATCTACCTTGGTCTTTGAGCATTTCTTCAGCATAATTTCAGATTCTAAATATCCTCTACAGTGGATTCCCACATCACTTTATCCGTGATCTTCAAGATGCCAAATTGCTCCGAATGATTTCATGGCTTTGTTGACAGTTGGCACAAAGCTATAATTGTCCATTTCCATTACCCCATGATCCAAAACGTCAGACACATTTTTGCATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>499 323 178</canonical_bands>
                <polymorphic_bands>677 323</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTCTCATCAATTTGTATTGTGT</pcr_primer_p1>
		<pcr_primer_p2>CACAAATTTTAAGAGAAGCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTCTCATCAATTTGTATTGTGTCTTTGAGGAAAAAGAAGAGCGAAGTTTGAAATGGTCTTTAAATGCAAGAATTTTATTCAGAAGATCGAAAGGGTATTGAGTGATAATTTCAGATTTTAGCTTGGCTTCACCGCTTCAGCAGACCATTTCCAACTTGATTCCTTTGTCATCTTTTTTCCAAAAAAGGTTCCTCCTTCCTCCACATTTGATCAGCTATAAATTTTGTTTTGCTTCTCTTAAAATTTGTG</canonical_amplicon>
		<polymorphic_amplicon>TGTCTCATCAATTTGTATTGTGTCTTTGAGGAAAAAGAAGAGCGAAGTTTGAAATGGTCTTWAAATGCAAGAATTTTATTCAGAAGATCGAAAGGGTATTGAGTGATAATTTCAGATTTTAGCTTGGCTTCACCGCTTCAGCAGACCATTTCCAACTTGATTCCTTTGTCATCTTTTTTCCAAAAAAGGTTCCTCCTTCCTCCACATTTGATCAGCTATAAATTTTGTTTTGCTTCTCTTAAAATTTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14236</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>268088</contig_pos>
        <strand>+</strand>
        <context>GTCTTTGAGG[A/G]AAAAGAAGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGGTTCAGCAGATGTCTGTGTCTCATCAATTTGTATTGTGTCTTTGAGG</left_flank>
        <right_flank>AAAAGAAGAGCGAAGTTTGAAATGGTCTTTAAATGCAAGAATTTTATTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTTAGTTTCGGGACATTTGTCTAGATCAGCGAATTCCAATGGAACCTGAAACGAAGGATATTGATGAAACAAGCCAGGCAAAATTTACCTGGCAAATTACGGAACTTCGAATCGCATGAACTTTTGCATCAGTTCGACTGCTTGGAGAAAACTTCAATTTATCCTTTTGCTCTGGGTGTTGCTCTCTTCGCGGTCCGAATATCGACTGTGACACTGTCTGAAAAACAATTACCAAGCTTGTTCGATTTCCTAATGTAAAACCTGATTTAGAAGATCCATAACACCGAATCCGGTTCCACCTTTCGCCATTTCGGGAAATTTCGATCCATCGTAACGGATCCAAAACAAATATCGCCGAATTTCCCTCATGATTTCAGTTGTTTCAGTGATTATTTTCAAATGATGAGTTCTCCGAGAGGACTACACGGCAAACAGTTTCAGGCGGCCTAGGTTCAGCAGATGTCTGTGTCTCATCAATTTGTATTGTGTCTTTGAGGAAAAAGAAGAGCGAAGTTTGAAATGGTCTTTAAATGCAAGAATTTTATTCAGAAGATCGAAAGGGTATTGAGTGATAATTTCAGATTTTAGCTTGGCTTCACCGCTTCAGCAGACCATTTCCAACTTGATTCCTTTGTCATCTTTTTTCCAAAAAAGGTTCCTCCTTCCTCCACATTTGATCAGCTATAAATTTTGTTTTGCTTCTCTTAAAATTTGTGGTGTTTGAAAAATGAAGACTGCGAAAAAATTATTGGTTATCACCTGGTTCCCCGCTGAGTTTAGTTGTAATCTGGATTTTCAGAGTTTTCTTCCTTTTGAGAGAATCTACCTTGGTCTTTGAGCATTTCTTCAGCATAATTTCAGATTCTAAATATCCTCTACAGTGGATTCCCACATCACTTTATCCGTGATCTTCAAGATGCCAAATTGCTCCGAATGATTTCATGGCTTTGTTGACAGTTGGCACAAAGCTATAATTGTCCATTTCCATTACCCCATGA</canonical>
            <polymorphic>ATCTTAGTTTCGGGACATTTGTCTAGATCAGCGAATTCCAATGGAACCTGAAACGAAGGATATTGATGAAACAAGCCAGGCAAAATTTACCTGGCAAATTACGGAACTTCGAATCGCATGAACTTTTGCATCAGTTCGACTGCTTGGAGAAAACTTCAATTTATCCTTTTGCTCTGGGTGTTGCTCTCTTCGCGGTCCGAATATCGACTGTGACACTGTCTGAAAAACAATTACCAAGCTTGTTCGATTTCCTAATGTAAAACCTGATTTAGAAGATCCATAACACCGAATCCGGTTCCACCTTTCGCCATTTCGGGAAATTTCGATCCATCGTAACGGATCCAAAACAAATATCGCCGAATTTCCCTCATGATTTCAGTTGTTTCAGTGATTATTTTCAAATGATGAGTTCTCCGAGAGGACTACACGGCAAACAGTTTCAGGCGGCCTAGGTTCAGCAGATGTCTGTGTCTCATCAATTTGTATTGTGTCTTTGAGGRAAAAGAAGAGCGAAGTTTGAAATGGTCTTTAAATGCAAGAATTTTATTCAGAAGATCGAAAGGGTATTGAGTGATAATTTCAGATTTTAGCTTGGCTTCACCGCTTCAGCAGACCATTTCCAACTTGATTCCTTTGTCATCTTTTTTCCAAAAAAGGTTCCTCCTTCCTCCACATTTGATCAGCTATAAATTTTGTTTTGCTTCTCTTAAAATTTGTGGTGTTTGAAAAATGAAGACTGCGAAAAAATTATTGGTTATCACCTGGTTCCCCGCTGAGTTTAGTTGTAATCTGGATTTTCAGAGTTTTCTTCCTTTTGAGAGAATCTACCTTGGTCTTTGAGCATTTCTTCAGCATAATTTCAGATTCTAAATATCCTCTACAGTGGATTCCCACATCACTTTATCCGTGATCTTCAAGATGCCAAATTGCTCCGAATGATTTCATGGCTTTGTTGACAGTTGGCACAAAGCTATAATTGTCCATTTCCATTACCCCATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTCAAATGATGAGTTCTCC</pcr_primer_p1>
		<pcr_primer_p2>AAAGATGACAAAGGAATCAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATTTTCAAATGATGAGTTCTCCGAGAGGACTACACGGCAAACAGTTTCAGGCGGCCTAGGTTCAGCAGATGTCTGTGTCTCATCAATTTGTATTGTGTCTTTGAGGAAAAAGAAGAGCGAAGTTTGAAATGGTCTTTAAATGCAAGAATTTTATTCAGAAGATCGAAAGGGTATTGAGTGATAATTTCAGATTTTAGCTTGGCTTCACCGCTTCAGCAGACCATTTCCAACTTGATTCCTTTGTCATCTTT</canonical_amplicon>
		<polymorphic_amplicon>TATTTTCAAATGATGAGTTCTCCGAGAGGACTACACGGCAAACAGTTTCAGGCGGCCTAGGTTCAGCAGATGTCTGTGTCTCATCAATTTGTATTGTGTCTTTGAGGRAAAAGAAGAGCGAAGTTTGAAATGGTCTTTAAATGCAAGAATTTTATTCAGAAGATCGAAAGGGTATTGAGTGATAATTTCAGATTTTAGCTTGGCTTCACCGCTTCAGCAGACCATTTCCAACTTGATTCCTTTGTCATCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14237</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>268054</contig_pos>
        <strand>+</strand>
        <context>CAGCAGATGK[C/T]TGTGTCTCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGAGGACTACACGGCAAACAGTTTCAGGCGGCCTAGGTTCAGCAGATGT</left_flank>
        <right_flank>TGTGTCTCATCAATTTGTATTGTGTCTTTGAGGAAAAAGAAGAGCGAAGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCAATGATTGATTTCCATGTTCTCATGTATTGGATCTTAGTTTCGGGACATTTGTCTAGATCAGCGAATTCCAATGGAACCTGAAACGAAGGATATTGATGAAACAAGCCAGGCAAAATTTACCTGGCAAATTACGGAACTTCGAATCGCATGAACTTTTGCATCAGTTCGACTGCTTGGAGAAAACTTCAATTTATCCTTTTGCTCTGGGTGTTGCTCTCTTCGCGGTCCGAATATCGACTGTGACACTGTCTGAAAAACAATTACCAAGCTTGTTCGATTTCCTAATGTAAAACCTGATTTAGAAGATCCATAACACCGAATCCGGTTCCACCTTTCGCCATTTCGGGAAATTTCGATCCATCGTAACGGATCCAAAACAAATATCGCCGAATTTCCCTCATGATTTCAGTTGTTTCAGTGATTATTTTCAAATGATGAGTTCTCCGAGAGGACTACACGGCAAACAGTTTCAGGCGGCCTAGGTTCAGCAGATGTCTGTGTCTCATCAATTTGTATTGTGTCTTTGAGGAAAAAGAAGAGCGAAGTTTGAAATGGTCTTTAAATGCAAGAATTTTATTCAGAAGATCGAAAGGGTATTGAGTGATAATTTCAGATTTTAGCTTGGCTTCACCGCTTCAGCAGACCATTTCCAACTTGATTCCTTTGTCATCTTTTTTCCAAAAAAGGTTCCTCCTTCCTCCACATTTGATCAGCTATAAATTTTGTTTTGCTTCTCTTAAAATTTGTGGTGTTTGAAAAATGAAGACTGCGAAAAAATTATTGGTTATCACCTGGTTCCCCGCTGAGTTTAGTTGTAATCTGGATTTTCAGAGTTTTCTTCCTTTTGAGAGAATCTACCTTGGTCTTTGAGCATTTCTTCAGCATAATTTCAGATTCTAAATATCCTCTACAGTGGATTCCCACATCACTTTATCCGTGATCTTCAAGATGCCAAATTGCTCCGAATGATTTCATGGCTTTGTTGACAGTTGGCAC</canonical>
            <polymorphic>GTCAATGATTGATTTCCATGTTCTCATGTATTGGATCTTAGTTTCGGGACATTTGTCTAGATCAGCGAATTCCAATGGAACCTGAAACGAAGGATATTGATGAAACAAGCCAGGCAAAATTTACCTGGCAAATTACGGAACTTCGAATCGCATGAACTTTTGCATCAGTTCGACTGCTTGGAGAAAACTTCAATTTATCCTTTTGCTCTGGGTGTTGCTCTCTTCGCGGTCCGAATATCGACTGTGACACTGTCTGAAAAACAATTACCAAGCTTGTTCGATTTCCTAATGTAAAACCTGATTTAGAAGATCCATAACACCGAATCCGGTTCCACCTTTCGCCATTTCGGGAAATTTCGATCCATCGTAACGGATCCAAAACAAATATCGCCGAATTTCCCTCATGATTTCAGTTGTTTCAGTGATTATTTTCAAATGATGAGTTCTCCGAGAGGACTACACGGCAAACAGTTTCAGGCGGCCTAGGTTCAGCAGATGTYTGTGTCTCATCAATTTGTATTGTGTCTTTGAGGAAAAAGAAGAGCGAAGTTTGAAATGGTCTTTAAATGCAAGAATTTTATTCAGAAGATCGAAAGGGTATTGAGTGATAATTTCAGATTTTAGCTTGGCTTCACCGCTTCAGCAGACCATTTCCAACTTGATTCCTTTGTCATCTTTTTTCCAAAAAAGGTTCCTCCTTCCTCCACATTTGATCAGCTATAAATTTTGTTTTGCTTCTCTTAAAATTTGTGGTGTTTGAAAAATGAAGACTGCGAAAAAATTATTGGTTATCACCTGGTTCCCCGCTGAGTTTAGTTGTAATCTGGATTTTCAGAGTTTTCTTCCTTTTGAGAGAATCTACCTTGGTCTTTGAGCATTTCTTCAGCATAATTTCAGATTCTAAATATCCTCTACAGTGGATTCCCACATCACTTTATCCGTGATCTTCAAGATGCCAAATTGCTCCGAATGATTTCATGGCTTTGTTGACAGTTGGCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTCAAATGATGAGTTCTCC</pcr_primer_p1>
		<pcr_primer_p2>AAAGATGACAAAGGAATCAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATTTTCAAATGATGAGTTCTCCGAGAGGACTACACGGCAAACAGTTTCAGGCGGCCTAGGTTCAGCAGATGTCTGTGTCTCATCAATTTGTATTGTGTCTTTGAGGAAAAAGAAGAGCGAAGTTTGAAATGGTCTTTAAATGCAAGAATTTTATTCAGAAGATCGAAAGGGTATTGAGTGATAATTTCAGATTTTAGCTTGGCTTCACCGCTTCAGCAGACCATTTCCAACTTGATTCCTTTGTCATCTTT</canonical_amplicon>
		<polymorphic_amplicon>TATTTTCAAATGATGAGTTCTCCGAGAGGACTACACGGCAAACAGTTTCAGGCGGCCTAGGTTCAGCAGATGTYTGTGTCTCATCAATTTGTATTGTGTCTTTGAGGAAAAAGAAGAGCGAAGTTTGAAATGGTCTTTAAATGCAAGAATTTTATTCAGAAGATCGAAAGGGTATTGAGTGATAATTTCAGATTTTAGCTTGGCTTCACCGCTTCAGCAGACCATTTCCAACTTGATTCCTTTGTCATCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14238</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>268053</contig_pos>
        <strand>+</strand>
        <context>TCAGCAGATG[G/T]YTGTGTCTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGAGAGGACTACACGGCAAACAGTTTCAGGCGGCCTAGGTTCAGCAGATG</left_flank>
        <right_flank>CTGTGTCTCATCAATTTGTATTGTGTCTTTGAGGAAAAAGAAGAGCGAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTCAATGATTGATTTCCATGTTCTCATGTATTGGATCTTAGTTTCGGGACATTTGTCTAGATCAGCGAATTCCAATGGAACCTGAAACGAAGGATATTGATGAAACAAGCCAGGCAAAATTTACCTGGCAAATTACGGAACTTCGAATCGCATGAACTTTTGCATCAGTTCGACTGCTTGGAGAAAACTTCAATTTATCCTTTTGCTCTGGGTGTTGCTCTCTTCGCGGTCCGAATATCGACTGTGACACTGTCTGAAAAACAATTACCAAGCTTGTTCGATTTCCTAATGTAAAACCTGATTTAGAAGATCCATAACACCGAATCCGGTTCCACCTTTCGCCATTTCGGGAAATTTCGATCCATCGTAACGGATCCAAAACAAATATCGCCGAATTTCCCTCATGATTTCAGTTGTTTCAGTGATTATTTTCAAATGATGAGTTCTCCGAGAGGACTACACGGCAAACAGTTTCAGGCGGCCTAGGTTCAGCAGATGTCTGTGTCTCATCAATTTGTATTGTGTCTTTGAGGAAAAAGAAGAGCGAAGTTTGAAATGGTCTTTAAATGCAAGAATTTTATTCAGAAGATCGAAAGGGTATTGAGTGATAATTTCAGATTTTAGCTTGGCTTCACCGCTTCAGCAGACCATTTCCAACTTGATTCCTTTGTCATCTTTTTTCCAAAAAAGGTTCCTCCTTCCTCCACATTTGATCAGCTATAAATTTTGTTTTGCTTCTCTTAAAATTTGTGGTGTTTGAAAAATGAAGACTGCGAAAAAATTATTGGTTATCACCTGGTTCCCCGCTGAGTTTAGTTGTAATCTGGATTTTCAGAGTTTTCTTCCTTTTGAGAGAATCTACCTTGGTCTTTGAGCATTTCTTCAGCATAATTTCAGATTCTAAATATCCTCTACAGTGGATTCCCACATCACTTTATCCGTGATCTTCAAGATGCCAAATTGCTCCGAATGATTTCATGGCTTTGTTGACAGTTGGCA</canonical>
            <polymorphic>CGTCAATGATTGATTTCCATGTTCTCATGTATTGGATCTTAGTTTCGGGACATTTGTCTAGATCAGCGAATTCCAATGGAACCTGAAACGAAGGATATTGATGAAACAAGCCAGGCAAAATTTACCTGGCAAATTACGGAACTTCGAATCGCATGAACTTTTGCATCAGTTCGACTGCTTGGAGAAAACTTCAATTTATCCTTTTGCTCTGGGTGTTGCTCTCTTCGCGGTCCGAATATCGACTGTGACACTGTCTGAAAAACAATTACCAAGCTTGTTCGATTTCCTAATGTAAAACCTGATTTAGAAGATCCATAACACCGAATCCGGTTCCACCTTTCGCCATTTCGGGAAATTTCGATCCATCGTAACGGATCCAAAACAAATATCGCCGAATTTCCCTCATGATTTCAGTTGTTTCAGTGATTATTTTCAAATGATGAGTTCTCCGAGAGGACTACACGGCAAACAGTTTCAGGCGGCCTAGGTTCAGCAGATGKCTGTGTCTCATCAATTTGTATTGTGTCTTTGAGGAAAAAGAAGAGCGAAGTTTGAAATGGTCTTTAAATGCAAGAATTTTATTCAGAAGATCGAAAGGGTATTGAGTGATAATTTCAGATTTTAGCTTGGCTTCACCGCTTCAGCAGACCATTTCCAACTTGATTCCTTTGTCATCTTTTTTCCAAAAAAGGTTCCTCCTTCCTCCACATTTGATCAGCTATAAATTTTGTTTTGCTTCTCTTAAAATTTGTGGTGTTTGAAAAATGAAGACTGCGAAAAAATTATTGGTTATCACCTGGTTCCCCGCTGAGTTTAGTTGTAATCTGGATTTTCAGAGTTTTCTTCCTTTTGAGAGAATCTACCTTGGTCTTTGAGCATTTCTTCAGCATAATTTCAGATTCTAAATATCCTCTACAGTGGATTCCCACATCACTTTATCCGTGATCTTCAAGATGCCAAATTGCTCCGAATGATTTCATGGCTTTGTTGACAGTTGGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTCAAATGATGAGTTCTCC</pcr_primer_p1>
		<pcr_primer_p2>AAAGATGACAAAGGAATCAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATTTTCAAATGATGAGTTCTCCGAGAGGACTACACGGCAAACAGTTTCAGGCGGCCTAGGTTCAGCAGATGTCTGTGTCTCATCAATTTGTATTGTGTCTTTGAGGAAAAAGAAGAGCGAAGTTTGAAATGGTCTTTAAATGCAAGAATTTTATTCAGAAGATCGAAAGGGTATTGAGTGATAATTTCAGATTTTAGCTTGGCTTCACCGCTTCAGCAGACCATTTCCAACTTGATTCCTTTGTCATCTTT</canonical_amplicon>
		<polymorphic_amplicon>TATTTTCAAATGATGAGTTCTCCGAGAGGACTACACGGCAAACAGTTTCAGGCGGCCTAGGTTCAGCAGATGKCTGTGTCTCATCAATTTGTATTGTGTCTTTGAGGAAAAAGAAGAGCGAAGTTTGAAATGGTCTTTAAATGCAAGAATTTTATTCAGAAGATCGAAAGGGTATTGAGTGATAATTTCAGATTTTAGCTTGGCTTCACCGCTTCAGCAGACCATTTCCAACTTGATTCCTTTGTCATCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14239</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>267968</contig_pos>
        <strand>+</strand>
        <context>ATGATTTCAG[C/T]TGTTTCAGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCGTAACGGATCCAAAACAAATATCGCCGAATTTCCCTCATGATTTCAG</left_flank>
        <right_flank>TGTTTCAGTGATTATTTTCAAATGATGAGTTCTCCGAGAGGACTACACGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACCTATATGACACACTTCTTCTGATACAAAATCCAGCAGAGACAGAGTGTGCATCTAGGATTTCTAGAGATCCCGGATTTGCGGCGTCAATGATTGATTTCCATGTTCTCATGTATTGGATCTTAGTTTCGGGACATTTGTCTAGATCAGCGAATTCCAATGGAACCTGAAACGAAGGATATTGATGAAACAAGCCAGGCAAAATTTACCTGGCAAATTACGGAACTTCGAATCGCATGAACTTTTGCATCAGTTCGACTGCTTGGAGAAAACTTCAATTTATCCTTTTGCTCTGGGTGTTGCTCTCTTCGCGGTCCGAATATCGACTGTGACACTGTCTGAAAAACAATTACCAAGCTTGTTCGATTTCCTAATGTAAAACCTGATTTAGAAGATCCATAACACCGAATCCGGTTCCACCTTTCGCCATTTCGGGAAATTTCGATCCATCGTAACGGATCCAAAACAAATATCGCCGAATTTCCCTCATGATTTCAGTTGTTTCAGTGATTATTTTCAAATGATGAGTTCTCCGAGAGGACTACACGGCAAACAGTTTCAGGCGGCCTAGGTTCAGCAGATGTCTGTGTCTCATCAATTTGTATTGTGTCTTTGAGGAAAAAGAAGAGCGAAGTTTGAAATGGTCTTTAAATGCAAGAATTTTATTCAGAAGATCGAAAGGGTATTGAGTGATAATTTCAGATTTTAGCTTGGCTTCACCGCTTCAGCAGACCATTTCCAACTTGATTCCTTTGTCATCTTTTTTCCAAAAAAGGTTCCTCCTTCCTCCACATTTGATCAGCTATAAATTTTGTTTTGCTTCTCTTAAAATTTGTGGTGTTTGAAAAATGAAGACTGCGAAAAAATTATTGGTTATCACCTGGTTCCCCGCTGAGTTTAGTTGTAATCTGGATTTTCAGAGTTTTCTTCCTTTTGAGAGAATCTACCTTGGTCTTTGAGCATTTCTTCAGCATAATTTCAGATTCTAAATATCCTCTA</canonical>
            <polymorphic>TACCTATATGACACACTTCTTCTGATACAAAATCCAGCAGAGACAGAGTGTGCATCTAGGATTTCTAGAGATCCCGGATTTGCGGCGTCAATGATTGATTTCCATGTTCTCATGTATTGGATCTTAGTTTCGGGACATTTGTCTAGATCAGCGAATTCCAATGGAACCTGAAACGAAGGATATTGATGAAACAAGCCAGGCAAAATTTACCTGGCAAATTACGGAACTTCGAATCGCATGAACTTTTGCATCAGTTCGACTGCTTGGAGAAAACTTCAATTTATCCTTTTGCTCTGGGTGTTGCTCTCTTCGCGGTCCGAATATCGACTGTGACACTGTCTGAAAAACAATTACCAAGCTTGTTCGATTTCCTAATGTAAAACCTGATTTAGAAGATCCATAACACCGAATCCGGTTCCACCTTTCGCCATTTCGGGAAATTTCGATCCATCGTAACGGATCCAAAACAAATATCGCCGAATTTCCCTCATGATTTCAGYTGTTTCAGTGATTATTTTCAAATGATGAGTTCTCCGAGAGGACTACACGGCAAACAGTTTCAGGCGGCCTAGGTTCAGCAGATGTCTGTGTCTCATCAATTTGTATTGTGTCTTTGAGGAAAAAGAAGAGCGAAGTTTGAAATGGTCTTTAAATGCAAGAATTTTATTCAGAAGATCGAAAGGGTATTGAGTGATAATTTCAGATTTTAGCTTGGCTTCACCGCTTCAGCAGACCATTTCCAACTTGATTCCTTTGTCATCTTTTTTCCAAAAAAGGTTCCTCCTTCCTCCACATTTGATCAGCTATAAATTTTGTTTTGCTTCTCTTAAAATTTGTGGTGTTTGAAAAATGAAGACTGCGAAAAAATTATTGGTTATCACCTGGTTCCCCGCTGAGTTTAGTTGTAATCTGGATTTTCAGAGTTTTCTTCCTTTTGAGAGAATCTACCTTGGTCTTTGAGCATTTCTTCAGCATAATTTCAGATTCTAAATATCCTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTCGATTTCCTAATGTAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CACAATACAAATTGATGAGACAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTTCGATTTCCTAATGTAAAACCTGATTTAGAAGATCCATAACACCGAATCCGGTTCCACCTTTCGCCATTTCGGGAAATTTCGATCCATCGTAACGGATCCAAAACAAATATCGCCGAATTTCCCTCATGATTTCAGTTGTTTCAGTGATTATTTTCAAATGATGAGTTCTCCGAGAGGACTACACGGCAAACAGTTTCAGGCGGCCTAGGTTCAGCAGATGTCTGTGTCTCATCAATTTGTATTGTG</canonical_amplicon>
		<polymorphic_amplicon>TGTTCGATTTCCTAATGTAAAACCTGATTTAGAAGATCCATAACACCGAATCCGGTTCCACCTTTCGCCATTTCGGGAAATTTCGATCCATCGTAACGGATCCAAAACAAATATCGCCGAATTTCCCTCATGATTTCAGYTGTTTCAGTGATTATTTTCAAATGATGAGTTCTCCGAGAGGACTACACGGCAAACAGTTTCAGGCGGCCTAGGTTCAGCAGATGTCTGTGTCTCATCAATTTGTATTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14240</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>15016</contig_pos>
        <strand></strand>
        <context>AAATCACTAA[C/T]YAGGTAGCAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGAACGCTGGCATCACAACCTATAATCCCAACTCGTTGGAAATCACTAA</left_flank>
        <right_flank>CAGGTAGCACTTTTGACTGAAAACTTTGAAATCTGAAGAAAATATGGGAG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAGCAAAAAATAGCCGAAAAGAGCAGTTTTTGCAGTCAAAAATGTAACAAATGCATTTAAAACGTTCAAAAAAGTAGAAAGTTGCCTATTTTTCGACTTTCTGGGGTCAGAAATGAGCAAAAAATAGCTGAAAATTGCGGTTTTCGCAGTCAAAAATGTCAAAATTTTCGAAAAAAAAGTCGAAAATTGTCTATTTTCCGACTTTTTGGGCTCAGAAATGAGCAAAAGATGGCCGAAAATAGCGATTTTTGGGCTCGAAAATGTCAGAAAAAAAGAGCTTTTTCTGGCAGAAATTCGAAAAAAAAGTCAGATTTTTTAGTCAAAAATGGGAATTTTCGCGATTTTTAGCCAAATTTAGGTTTTAAAAAAGAGCAAAAATGACAAAAAATTGAAAAAAAACTACCCGTAGAAATGATAAATTTCCAGATACAAACGGGTTTTCTCGATCGGAACGCTGGCATCACAACCTATAATCCCAACTCGTTGGAAATCACTAACCAGGTAGCACTTTTGACTGAAAACTTTGAAATCTGAAGAAAATATGGGAGAAGGCTGATAAAAATTGGTAAAAATTGGTCTAAATTGATCTAAATTCTCATTTTGAAATCTCTGGCTTGAATTACACTGAAAATAGGCAAAAGTTGAGATTTTATGTCTCAAAATGCTGATTTTTGGCTTCAAACTAGCTGGAAAATCGTCAGAAATCACTAAATTTTCATTTTGAAATCTGAAAAATCGGTGAAATGAGCTGGAAAATCATCAAAAATGGCAAAATGCGGACCGAAATTCCACTGAAAATGGGCAAAAATCAAGAATTTTTGACATTTCCAGGTTTTTCAGCTATTTTCAAAACATATTTTTCGATTTTTCTGGTTTTTTTCGTCTGAAATTCTGATGAAACGGTGTCCTGGGTTACTGTAGATTACTGTACAAAGTTTTGTAGTTTTTCTCTGCAAACCCAATCACGTCGAAATGCAGATTTAAAAAAACTCCAAAAT</canonical>
            <polymorphic>ATGAGCAAAAAATAGCCGAAAAGAGCAGTTTTTGCAGTCAAAAATGTAACAAATGCATTTAAAACGTTCAAAAAAGTAGAAAGTTGCCTATTTTTCGACTTTCTGGGGTCAGAAATGAGCAAAAAATAGCTGAAAATTGCGGTTTTCGCAGTCAAAAATGTCAAAATTTTCGAAAAAAAAGTCGAAAATTGTCTATTTTCCGACTTTTTGGGCTCAGAAATGAGCAAAAGATGGCCGAAAATAGCGATTTTTGGGCTCGAAAATGTCAGAAAAAAAGAGCTTTTTCTGGCAGAAATTCGAAAAAAAAGTCAGATTTTTTAGTCAAAAATGGGAATTTTCGCGATTTTTAGCCAAATTTAGGTTTTAAAAAAGAGCAAAAATGACAAAAAATTGAAAAAAAACTACCCGTAGAAATGATAAATTTCCAGATACAAACGGGTTTTCTCGATCGGAACGCTGGCATCACAACCTATAATCCCAACTCGTTGGAAATCACTAAYCAGGTAGCACTTTTGACTGAAAACTTTGAAATCTGAAGAAAATATGGGAGAAGGCTGATAAAAATTGGTAAAAATTGGTCTAAATTGATCTAAATTCTCATTTTGAAATCTCTGGCTTGAATTACACTGAAAATAGGCAAAAGTTGAGATTTTATGTCTCAAAATGCTGATTTTTGGCTTCAAACTAGCTGGAAAATCGTCAGAAATCACTAAATTTTCATTTTGAAATCTGAAAAATCGGTGAAATGAGCTGGAAAATCATCAAAAATGGCAAAATGCGGACCGAAATTCCACTGAAAATGGGCAAAAATCAAGAATTTTTGACATTTCCAGGTTTTTCAGCTATTTTCAAAACATATTTTTCGATTTTTCTGGTTTTTTTCGTCTGAAATTCTGATGAAACGGTGTCCTGGGTTACTGTAGATTACTGTACAAAGTTTTGTAGTTTTTCTCTGCAAACCCAATCACGTCGAAATGCAGATTTAAAAAAACTCCAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>501 330 90 79</canonical_bands>
                <polymorphic_bands>831 90 79</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>501 330 90 79</canonical_bands>
                <polymorphic_bands>831 90 79</polymorphic_bands>
            </assay>
            <assay>
                <site>ACCWGGT</site>
                <isoschizomers>
                    <enzyme>MabI</enzyme>
                    <enzyme>SexAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTAGCCAAATTTAGGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCAATTTAGACCAATTTTTACCA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTAGCCAAATTTAGGTTTTAAAAAAGAGCAAAAATGACAAAAAATTGAAAAAAAACTACCCGTAGAAATGATAAATTTCCAGATACAAACGGGTTTTCTCGATCGGAACGCTGGCATCACAACCTATAATCCCAACTCGTTGGAAATCACTAACCAGGTAGCACTTTTGACTGAAAACTTTGAAATCTGAAGAAAATATGGGAGAAGGCTGATAAAAATTGGTAAAAATTGGTCTAAATTGA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTAGCCAAATTTAGGTTTTAAAAAAGAGCAAAAATGACAAAAAATTGAAAAAAAACTACCCGTAGAAATGATAAATTTCCAGATACAAACGGGTTTTCTCGATCGGAACGCTGGCATCACAACCTATAATCCCAACTCGTTGGAAATCACTAAYCAGGTAGCACTTTTGACTGAAAACTTTGAAATCTGAAGAAAATATGGGAGAAGGCTGATAAAAATTGGTAAAAATTGGTCTAAATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14241</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>14746</contig_pos>
        <strand>+</strand>
        <context>ATGAGCAAAA[A/G]ATGGCCGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTCGAAAATTGTCTATTTTCCGACTTTTTGGGCTCAGAAATGAGCAAAA</left_flank>
        <right_flank>ATGGCCGAAAATAGCGATTTTTGGGCTCGAAAATGTCAGAAAAAAAGAGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCGTTATTTATGCCGTTTTTTGGGGATTTTTCACCGGATTTTTCGCTATTTTTCAGTGTAAATGTCAAACTGAACGAAATGGCCAATCAGTTTTGTACGGAGAATCGCGATGTCGCGTGCTACTTGGTCACCAAACACTCATGGAAGGGAAAGTGAGGATTTTAATAGGAAAATAGAGGAAAAATGAGCAAAAAATGACCGAAAATAGCGATTTCTGCAGTCAAAAGTGTCAAAAATCCCCTATTTTCCGACTTTTTGGGCTCAGAAATGAGCAAAAAATAGCCGAAAAGAGCAGTTTTTGCAGTCAAAAATGTAACAAATGCATTTAAAACGTTCAAAAAAGTAGAAAGTTGCCTATTTTTCGACTTTCTGGGGTCAGAAATGAGCAAAAAATAGCTGAAAATTGCGGTTTTCGCAGTCAAAAATGTCAAAATTTTCGAAAAAAAAGTCGAAAATTGTCTATTTTCCGACTTTTTGGGCTCAGAAATGAGCAAAAGATGGCCGAAAATAGCGATTTTTGGGCTCGAAAATGTCAGAAAAAAAGAGCTTTTTCTGGCAGAAATTCGAAAAAAAAGTCAGATTTTTTAGTCAAAAATGGGAATTTTCGCGATTTTTAGCCAAATTTAGGTTTTAAAAAAGAGCAAAAATGACAAAAAATTGAAAAAAAACTACCCGTAGAAATGATAAATTTCCAGATACAAACGGGTTTTCTCGATCGGAACGCTGGCATCACAACCTATAATCCCAACTCGTTGGAAATCACTAACCAGGTAGCACTTTTGACTGAAAACTTTGAAATCTGAAGAAAATATGGGAGAAGGCTGATAAAAATTGGTAAAAATTGGTCTAAATTGATCTAAATTCTCATTTTGAAATCTCTGGCTTGAATTACACTGAAAATAGGCAAAAGTTGAGATTTTATGTCTCAAAATGCTGATTTTTGGCTTCAAACTAGCTGGAAAATCGTCAGAAATCACTAAATTTTCATTTTGAAATC</canonical>
            <polymorphic>TTTCCGTTATTTATGCCGTTTTTTGGGGATTTTTCACCGGATTTTTCGCTATTTTTCAGTGTAAATGTCAAACTGAACGAAATGGCCAATCAGTTTTGTACGGAGAATCGCGATGTCGCGTGCTACTTGGTCACCAAACACTCATGGAAGGGAAAGTGAGGATTTTAATAGGAAAATAGAGGAAAAATGAGCAAAAAATGACCGAAAATAGCGATTTCTGCAGTCAAAAGTGTCAAAAATCCCCTATTTTCCGACTTTTTGGGCTCAGAAATGAGCAAAAAATAGCCGAAAAGAGCAGTTTTTGCAGTCAAAAATGTAACAAATGCATTTAAAACGTTCAAAAAAGTAGAAAGTTGCCTATTTTTCGACTTTCTGGGGTCAGAAATGAGCAAAAAATAGCTGAAAATTGCGGTTTTCGCAGTCAAAAATGTCAAAATTTTCGAAAAAAAAGTCGAAAATTGTCTATTTTCCGACTTTTTGGGCTCAGAAATGAGCAAAARATGGCCGAAAATAGCGATTTTTGGGCTCGAAAATGTCAGAAAAAAAGAGCTTTTTCTGGCAGAAATTCGAAAAAAAAGTCAGATTTTTTAGTCAAAAATGGGAATTTTCGCGATTTTTAGCCAAATTTAGGTTTTAAAAAAGAGCAAAAATGACAAAAAATTGAAAAAAAACTACCCGTAGAAATGATAAATTTCCAGATACAAACGGGTTTTCTCGATCGGAACGCTGGCATCACAACCTATAATCCCAACTCGTTGGAAATCACTAACCAGGTAGCACTTTTGACTGAAAACTTTGAAATCTGAAGAAAATATGGGAGAAGGCTGATAAAAATTGGTAAAAATTGGTCTAAATTGATCTAAATTCTCATTTTGAAATCTCTGGCTTGAATTACACTGAAAATAGGCAAAAGTTGAGATTTTATGTCTCAAAATGCTGATTTTTGGCTTCAAACTAGCTGGAAAATCGTCAGAAATCACTAAATTTTCATTTTGAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCGCAGTCAAAAATGT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGTCATTTTTGCTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCGCAGTCAAAAATGTCAAAATTTTCGAAAAAAAAGTCGAAAATTGTCTATTTTCCGACTTTTTGGGCTCAGAAATGAGCAAAAGATGGCCGAAAATAGCGATTTTTGGGCTCGAAAATGTCAGAAAAAAAGAGCTTTTTCTGGCAGAAATTCGAAAAAAAAGTCAGATTTTTTAGTCAAAAATGGGAATTTTCGCGATTTTTAGCCAAATTTAGGTTTTAAAAAAGAGCAAAAATGACAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCGCAGTCAAAAATGTCAAAATTTTCGAAAAAAAAGTCGAAAATTGTCTATTTTCCGACTTTTTGGGCTCAGAAATGAGCAAAARATGGCCGAAAATAGCGATTTTTGGGCTCGAAAATGTCAGAAAAAAAGAGCTTTTTCTGGCAGAAATTCGAAAAAAAAGTCAGATTTTTTAGTCAAAAATGGGAATTTTCGCGATTTTTAGCCAAATTTAGGTTTTAAAAAAGAGCAAAAATGACAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14242</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>14729</contig_pos>
        <strand></strand>
        <context>ACTTTTTGGG[C/T]TCAGAAATGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATTTTCGAAAAAAAAGTCGAAAATTGTCTATTTTCCGACTTTTTGGG</left_flank>
        <right_flank>TCAGAAATGAGCAAAAGATGGCCGAAAATAGCGATTTTTGGGCTCGAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCATTTTTTTTGCGAAATTTCCGTTATTTATGCCGTTTTTTGGGGATTTTTCACCGGATTTTTCGCTATTTTTCAGTGTAAATGTCAAACTGAACGAAATGGCCAATCAGTTTTGTACGGAGAATCGCGATGTCGCGTGCTACTTGGTCACCAAACACTCATGGAAGGGAAAGTGAGGATTTTAATAGGAAAATAGAGGAAAAATGAGCAAAAAATGACCGAAAATAGCGATTTCTGCAGTCAAAAGTGTCAAAAATCCCCTATTTTCCGACTTTTTGGGCTCAGAAATGAGCAAAAAATAGCCGAAAAGAGCAGTTTTTGCAGTCAAAAATGTAACAAATGCATTTAAAACGTTCAAAAAAGTAGAAAGTTGCCTATTTTTCGACTTTCTGGGGTCAGAAATGAGCAAAAAATAGCTGAAAATTGCGGTTTTCGCAGTCAAAAATGTCAAAATTTTCGAAAAAAAAGTCGAAAATTGTCTATTTTCCGACTTTTTGGGCTCAGAAATGAGCAAAAGATGGCCGAAAATAGCGATTTTTGGGCTCGAAAATGTCAGAAAAAAAGAGCTTTTTCTGGCAGAAATTCGAAAAAAAAGTCAGATTTTTTAGTCAAAAATGGGAATTTTCGCGATTTTTAGCCAAATTTAGGTTTTAAAAAAGAGCAAAAATGACAAAAAATTGAAAAAAAACTACCCGTAGAAATGATAAATTTCCAGATACAAACGGGTTTTCTCGATCGGAACGCTGGCATCACAACCTATAATCCCAACTCGTTGGAAATCACTAACCAGGTAGCACTTTTGACTGAAAACTTTGAAATCTGAAGAAAATATGGGAGAAGGCTGATAAAAATTGGTAAAAATTGGTCTAAATTGATCTAAATTCTCATTTTGAAATCTCTGGCTTGAATTACACTGAAAATAGGCAAAAGTTGAGATTTTATGTCTCAAAATGCTGATTTTTGGCTTCAAACTAGCTGGAAAATCGTCAGAAATCACTAA</canonical>
            <polymorphic>GCATTTTTTTTGCGAAATTTCCGTTATTTATGCCGTTTTTTGGGGATTTTTCACCGGATTTTTCGCTATTTTTCAGTGTAAATGTCAAACTGAACGAAATGGCCAATCAGTTTTGTACGGAGAATCGCGATGTCGCGTGCTACTTGGTCACCAAACACTCATGGAAGGGAAAGTGAGGATTTTAATAGGAAAATAGAGGAAAAATGAGCAAAAAATGACCGAAAATAGCGATTTCTGCAGTCAAAAGTGTCAAAAATCCCCTATTTTCCGACTTTTTGGGYTCAGAAATGAGCAAAAAATAGCCGAAAAGAGCAGTTTTTGCAGTCAAAAATGTAACAAATGCATTTAAAACGTTCAAAAAAGTAGAAAGTTGCCTATTTTTCGACTTTCTGGGGTCAGAAATGAGCAAAAAATAGCTGAAAATTGCGGTTTTCGCAGTCAAAAATGTCAAAATTTTCGAAAAAAAAGTCGAAAATTGTCTATTTTCCGACTTTTTGGGCTCAGAAATGAGCAAAAGATGGCCGAAAATAGCGATTTTTGGGCTCGAAAATGTCAGAAAAAAAGAGCTTTTTCTGGCAGAAATTCGAAAAAAAAGTCAGATTTTTTAGTCAAAAATGGGAATTTTCGCGATTTTTAGCCAAATTTAGGTTTTAAAAAAGAGCAAAAATGACAAAAAATTGAAAAAAAACTACCCGTAGAAATGATAAATTTCCAGATACAAACGGGTTTTCTCGATCGGAACGCTGGCATCACAACCTATAATCCCAACTCGTTGGAAATCACTAACCAGGTAGCACTTTTGACTGAAAACTTTGAAATCTGAAGAAAATATGGGAGAAGGCTGATAAAAATTGGTAAAAATTGGTCTAAATTGATCTAAATTCTCATTTTGAAATCTCTGGCTTGAATTACACTGAAAATAGGCAAAAGTTGAGATTTTATGTCTCAAAATGCTGATTTTTGGCTTCAAACTAGCTGGAAAATCGTCAGAAATCACTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>456 282 219 43</canonical_bands>
                <polymorphic_bands>501 456 43</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>456 282 219 43</canonical_bands>
                <polymorphic_bands>501 456 43</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 281 219</canonical_bands>
                <polymorphic_bands>500 500</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>204 178 114 102 83 71 62 61 25 24 22 22 21 11</canonical_bands>
                <polymorphic_bands>204 200 114 102 83 71 62 61 25 24 22 21 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCGCAGTCAAAAATGT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGTCATTTTTGCTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCGCAGTCAAAAATGTCAAAATTTTCGAAAAAAAAGTCGAAAATTGTCTATTTTCCGACTTTTTGGGCTCAGAAATGAGCAAAAGATGGCCGAAAATAGCGATTTTTGGGCTCGAAAATGTCAGAAAAAAAGAGCTTTTTCTGGCAGAAATTCGAAAAAAAAGTCAGATTTTTTAGTCAAAAATGGGAATTTTCGCGATTTTTAGCCAAATTTAGGTTTTAAAAAAGAGCAAAAATGACAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCGCAGTCAAAAATGTCAAAATTTTCGAAAAAAAAGTCGAAAATTGTCTATTTTCCGACTTTTTGGGCTCAGAAATGAGCAAAAGATGGCCGAAAATAGCGATTTTTGGGCTCGAAAATGTCAGAAAAAAAGAGCTTTTTCTGGCAGAAATTCGAAAAAAAAGTCAGATTTTTTAGTCAAAAATGGGAATTTTCGCGATTTTTAGCCAAATTTAGGTTTTAAAAAAGAGCAAAAATGACAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14243</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>14716</contig_pos>
        <strand>+</strand>
        <context>TGTCTATTTT[C/T]CGACTTTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTCAAAAATGTCAAAATTTTCGAAAAAAAAGTCGAAAATTGTCTATTTT</left_flank>
        <right_flank>CGACTTTTTGGGCTCAGAAATGAGCAAAAGATGGCCGAAAATAGCGATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAGTTCCAAATTGCATTTTTTTTGCGAAATTTCCGTTATTTATGCCGTTTTTTGGGGATTTTTCACCGGATTTTTCGCTATTTTTCAGTGTAAATGTCAAACTGAACGAAATGGCCAATCAGTTTTGTACGGAGAATCGCGATGTCGCGTGCTACTTGGTCACCAAACACTCATGGAAGGGAAAGTGAGGATTTTAATAGGAAAATAGAGGAAAAATGAGCAAAAAATGACCGAAAATAGCGATTTCTGCAGTCAAAAGTGTCAAAAATCCCCTATTTTCCGACTTTTTGGGCTCAGAAATGAGCAAAAAATAGCCGAAAAGAGCAGTTTTTGCAGTCAAAAATGTAACAAATGCATTTAAAACGTTCAAAAAAGTAGAAAGTTGCCTATTTTTCGACTTTCTGGGGTCAGAAATGAGCAAAAAATAGCTGAAAATTGCGGTTTTCGCAGTCAAAAATGTCAAAATTTTCGAAAAAAAAGTCGAAAATTGTCTATTTTCCGACTTTTTGGGCTCAGAAATGAGCAAAAGATGGCCGAAAATAGCGATTTTTGGGCTCGAAAATGTCAGAAAAAAAGAGCTTTTTCTGGCAGAAATTCGAAAAAAAAGTCAGATTTTTTAGTCAAAAATGGGAATTTTCGCGATTTTTAGCCAAATTTAGGTTTTAAAAAAGAGCAAAAATGACAAAAAATTGAAAAAAAACTACCCGTAGAAATGATAAATTTCCAGATACAAACGGGTTTTCTCGATCGGAACGCTGGCATCACAACCTATAATCCCAACTCGTTGGAAATCACTAACCAGGTAGCACTTTTGACTGAAAACTTTGAAATCTGAAGAAAATATGGGAGAAGGCTGATAAAAATTGGTAAAAATTGGTCTAAATTGATCTAAATTCTCATTTTGAAATCTCTGGCTTGAATTACACTGAAAATAGGCAAAAGTTGAGATTTTATGTCTCAAAATGCTGATTTTTGGCTTCAAACTAGCTGGAAAATCGT</canonical>
            <polymorphic>TTAGTTCCAAATTGCATTTTTTTTGCGAAATTTCCGTTATTTATGCCGTTTTTTGGGGATTTTTCACCGGATTTTTCGCTATTTTTCAGTGTAAATGTCAAACTGAACGAAATGGCCAATCAGTTTTGTACGGAGAATCGCGATGTCGCGTGCTACTTGGTCACCAAACACTCATGGAAGGGAAAGTGAGGATTTTAATAGGAAAATAGAGGAAAAATGAGCAAAAAATGACCGAAAATAGCGATTTCTGCAGTCAAAAGTGTCAAAAATCCCCTATTTTCCGACTTTTTGGGCTCAGAAATGAGCAAAAAATAGCCGAAAAGAGCAGTTTTTGCAGTCAAAAATGTAACAAATGCATTTAAAACGTTCAAAAAAGTAGAAAGTTGCCTATTTTTCGACTTTCTGGGGTCAGAAATGAGCAAAAAATAGCTGAAAATTGCGGTTTTCGCAGTCAAAAATGTCAAAATTTTCGAAAAAAAAGTCGAAAATTGTCTATTTTYCGACTTTTTGGGCTCAGAAATGAGCAAAAGATGGCCGAAAATAGCGATTTTTGGGCTCGAAAATGTCAGAAAAAAAGAGCTTTTTCTGGCAGAAATTCGAAAAAAAAGTCAGATTTTTTAGTCAAAAATGGGAATTTTCGCGATTTTTAGCCAAATTTAGGTTTTAAAAAAGAGCAAAAATGACAAAAAATTGAAAAAAAACTACCCGTAGAAATGATAAATTTCCAGATACAAACGGGTTTTCTCGATCGGAACGCTGGCATCACAACCTATAATCCCAACTCGTTGGAAATCACTAACCAGGTAGCACTTTTGACTGAAAACTTTGAAATCTGAAGAAAATATGGGAGAAGGCTGATAAAAATTGGTAAAAATTGGTCTAAATTGATCTAAATTCTCATTTTGAAATCTCTGGCTTGAATTACACTGAAAATAGGCAAAAGTTGAGATTTTATGTCTCAAAATGCTGATTTTTGGCTTCAAACTAGCTGGAAAATCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>282 166 140 114 90 83 52 43 15 15</canonical_bands>
                <polymorphic_bands>282 166 140 114 105 83 52 43 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCGCAGTCAAAAATGT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGTCATTTTTGCTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCGCAGTCAAAAATGTCAAAATTTTCGAAAAAAAAGTCGAAAATTGTCTATTTTCCGACTTTTTGGGCTCAGAAATGAGCAAAAGATGGCCGAAAATAGCGATTTTTGGGCTCGAAAATGTCAGAAAAAAAGAGCTTTTTCTGGCAGAAATTCGAAAAAAAAGTCAGATTTTTTAGTCAAAAATGGGAATTTTCGCGATTTTTAGCCAAATTTAGGTTTTAAAAAAGAGCAAAAATGACAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCGCAGTCAAAAATGTCAAAATTTTCGAAAAAAAAGTCGAAAATTGTCTATTTTYCGACTTTTTGGGCTCAGAAATGAGCAAAAGATGGCCGAAAATAGCGATTTTTGGGCTCGAAAATGTCAGAAAAAAAGAGCTTTTTCTGGCAGAAATTCGAAAAAAAAGTCAGATTTTTTAGTCAAAAATGGGAATTTTCGCGATTTTTAGCCAAATTTAGGTTTTAAAAAAGAGCAAAAATGACAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14244</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>14646</contig_pos>
        <strand>+</strand>
        <context>CAAAAAATAG[C/T]TGAAAATTGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGTTGCCTATTTTTCGACTTTCTGGGGTCAGAAATGAGCAAAAAATAG</left_flank>
        <right_flank>TGAAAATTGCGGTTTTCGCAGTCAAAAATGTCAAAATTTTCGAAAAAAAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGCACTCGATTTTTCTCTCGAGAGATAACTTTTTTGTGCCAATTTTCCCACCGCAATTATCGCCGTTAATTAGTTCCAAATTGCATTTTTTTTGCGAAATTTCCGTTATTTATGCCGTTTTTTGGGGATTTTTCACCGGATTTTTCGCTATTTTTCAGTGTAAATGTCAAACTGAACGAAATGGCCAATCAGTTTTGTACGGAGAATCGCGATGTCGCGTGCTACTTGGTCACCAAACACTCATGGAAGGGAAAGTGAGGATTTTAATAGGAAAATAGAGGAAAAATGAGCAAAAAATGACCGAAAATAGCGATTTCTGCAGTCAAAAGTGTCAAAAATCCCCTATTTTCCGACTTTTTGGGCTCAGAAATGAGCAAAAAATAGCCGAAAAGAGCAGTTTTTGCAGTCAAAAATGTAACAAATGCATTTAAAACGTTCAAAAAAGTAGAAAGTTGCCTATTTTTCGACTTTCTGGGGTCAGAAATGAGCAAAAAATAGCTGAAAATTGCGGTTTTCGCAGTCAAAAATGTCAAAATTTTCGAAAAAAAAGTCGAAAATTGTCTATTTTCCGACTTTTTGGGCTCAGAAATGAGCAAAAGATGGCCGAAAATAGCGATTTTTGGGCTCGAAAATGTCAGAAAAAAAGAGCTTTTTCTGGCAGAAATTCGAAAAAAAAGTCAGATTTTTTAGTCAAAAATGGGAATTTTCGCGATTTTTAGCCAAATTTAGGTTTTAAAAAAGAGCAAAAATGACAAAAAATTGAAAAAAAACTACCCGTAGAAATGATAAATTTCCAGATACAAACGGGTTTTCTCGATCGGAACGCTGGCATCACAACCTATAATCCCAACTCGTTGGAAATCACTAACCAGGTAGCACTTTTGACTGAAAACTTTGAAATCTGAAGAAAATATGGGAGAAGGCTGATAAAAATTGGTAAAAATTGGTCTAAATTGATCTAAATTCTCATTTTGAAATCTCTGGCTTGAATTACACTGA</canonical>
            <polymorphic>CCGCACTCGATTTTTCTCTCGAGAGATAACTTTTTTGTGCCAATTTTCCCACCGCAATTATCGCCGTTAATTAGTTCCAAATTGCATTTTTTTTGCGAAATTTCCGTTATTTATGCCGTTTTTTGGGGATTTTTCACCGGATTTTTCGCTATTTTTCAGTGTAAATGTCAAACTGAACGAAATGGCCAATCAGTTTTGTACGGAGAATCGCGATGTCGCGTGCTACTTGGTCACCAAACACTCATGGAAGGGAAAGTGAGGATTTTAATAGGAAAATAGAGGAAAAATGAGCAAAAAATGACCGAAAATAGCGATTTCTGCAGTCAAAAGTGTCAAAAATCCCCTATTTTCCGACTTTTTGGGCTCAGAAATGAGCAAAAAATAGCCGAAAAGAGCAGTTTTTGCAGTCAAAAATGTAACAAATGCATTTAAAACGTTCAAAAAAGTAGAAAGTTGCCTATTTTTCGACTTTCTGGGGTCAGAAATGAGCAAAAAATAGYTGAAAATTGCGGTTTTCGCAGTCAAAAATGTCAAAATTTTCGAAAAAAAAGTCGAAAATTGTCTATTTTCCGACTTTTTGGGCTCAGAAATGAGCAAAAGATGGCCGAAAATAGCGATTTTTGGGCTCGAAAATGTCAGAAAAAAAGAGCTTTTTCTGGCAGAAATTCGAAAAAAAAGTCAGATTTTTTAGTCAAAAATGGGAATTTTCGCGATTTTTAGCCAAATTTAGGTTTTAAAAAAGAGCAAAAATGACAAAAAATTGAAAAAAAACTACCCGTAGAAATGATAAATTTCCAGATACAAACGGGTTTTCTCGATCGGAACGCTGGCATCACAACCTATAATCCCAACTCGTTGGAAATCACTAACCAGGTAGCACTTTTGACTGAAAACTTTGAAATCTGAAGAAAATATGGGAGAAGGCTGATAAAAATTGGTAAAAATTGGTCTAAATTGATCTAAATTCTCATTTTGAAATCTCTGGCTTGAATTACACTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>499 351 150</canonical_bands>
                <polymorphic_bands>649 351</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>204 185 178 114 83 71 61 24 22 22 21 15</canonical_bands>
                <polymorphic_bands>204 197 185 178 71 61 24 22 22 21 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGTAGAAAGTTGCCTATTTTTC</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTCCCATTTTTGACTAA</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>AAAGTAGAAAGTTGCCTATTTTTCGACTTTCTGGGGTCAGAAATGAGCAAAAAATAGCTGAAAATTGCGGTTTTCGCAGTCAAAAATGTCAAAATTTTCGAAAAAAAAGTCGAAAATTGTCTATTTTCCGACTTTTTGGGCTCAGAAATGAGCAAAAGATGGCCGAAAATAGCGATTTTTGGGCTCGAAAATGTCAGAAAAAAAGAGCTTTTTCTGGCAGAAATTCGAAAAAAAAGTCAGATTTTTTAGTCAAAAATGGGAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAGTAGAAAGTTGCCTATTTTTCGACTTTCTGGGGTCAGAAATGAGCAAAAAATAGYTGAAAATTGCGGTTTTCGCAGTCAAAAATGTCAAAATTTTCGAAAAAAAAGTCGAAAATTGTCTATTTTCCGACTTTTTGGGCTCAGAAATGAGCAAAAGATGGCCGAAAATAGCGATTTTTGGGCTCGAAAATGTCAGAAAAAAAGAGCTTTTTCTGGCAGAAATTCGAAAAAAAAGTCAGATTTTTTAGTCAAAAATGGGAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14245</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>47059</contig_pos>
        <strand>+</strand>
        <context>AGTTCTAGAC[C/T]CAAAGAATCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGTCCAGATCAGAGGCTGGAGCTGGCTAAACTGCTCCGAGTTCTAGAC</left_flank>
        <right_flank>CAAAGAATCTGAAGGTCTCCAAGAGCAGAAGGCGTTCGAAGAGATTCTGA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTTCGCCCATAGTCTTCTAGACGAGCCGAAATTGGTCAAAATGGGTTCTGGAAGGTGTCTTGAGCTCCCAAAATCTTCCAGAAGCTACCAAATGATTCGATGACCAAGTTTACCAAGAGAATGGCTTATCCAAGCCTAAATCTGGATCTCAGAACTCTGAGAGCTGATAGGAAGGTATGCGACGCTTTCCTAGCTTGTCAGAAGTCTTGGCACGGACTCTACAGTAGGTTTCGGTTGTCTTTAAATGGTCAATGGACGCGACTAGATGAGCCAAAATGGTTCTGGAAGGCGTAAGATCGTTCCTCAAGTTTCCAGAAGCTTCCAGTTGCTTCTGAGACCTAGCTAGATCGTTTGTTTTACTGGGACCTGCTTATCTCAGCTCAGACTGGAGATCAGAAGACGTGCGTTTCTCTCCTAGCTTGTCAGAATCTGGCAAGGAAGCTTCAAATGTCCAGATCAGAGGCTGGAGCTGGCTAAACTGCTCCGAGTTCTAGACCCAAAGAATCTGAAGGTCTCCAAGAGCAGAAGGCGTTCGAAGAGATTCTGACAGGTTGACCTGATTCCAGGAGCCAATATCATCTGCCCCTCTTCATCTTCTTCTTCCCTTTTCTCCAATCTTCCTCCCATTCAACACGAAAACCTGAGAGAGCGGCGAGCGGTCGGTGCGGACGGGCGCATCGCATCTCCACTACGTCTCTCTCCCGCCTCCCTGCGTCTCTTCGTCTCATATGATCACTCGCCACATTCGTTGTTCGCCGGGGCGGTCCTGGGTTCTTCTATTGATTCACTCGCACCCTCCGCGCCCCAGAACGTACTCTCGCATTTTTCTCTTCTCTGTCTTTTTTAGTTAGAATTCTTGGTTCAGTTTGGGGTTTTAGACCTTTGGTGCTGGGTGGGCCGGACCACCCGGGTAGGATGTTCTGGGAGGTCTTAGGCCTTAGGTCTAGGAAAGTCTTCGAGAAGAGGCCATTTTTTGGGTTTAGTGGGCGGAGCTTCT</canonical>
            <polymorphic>TAATTTCGCCCATAGTCTTCTAGACGAGCCGAAATTGGTCAAAATGGGTTCTGGAAGGTGTCTTGAGCTCCCAAAATCTTCCAGAAGCTACCAAATGATTCGATGACCAAGTTTACCAAGAGAATGGCTTATCCAAGCCTAAATCTGGATCTCAGAACTCTGAGAGCTGATAGGAAGGTATGCGACGCTTTCCTAGCTTGTCAGAAGTCTTGGCACGGACTCTACAGTAGGTTTCGGTTGTCTTTAAATGGTCAATGGACGCGACTAGATGAGCCAAAATGGTTCTGGAAGGCGTAAGATCGTTCCTCAAGTTTCCAGAAGCTTCCAGTTGCTTCTGAGACCTAGCTAGATCGTTTGTTTTACTGGGACCTGCTTATCTCAGCTCAGACTGGAGATCAGAAGACGTGCGTTTCTCTCCTAGCTTGTCAGAATCTGGCAAGGAAGCTTCAAATGTCCAGATCAGAGGCTGGAGCTGGCTAAACTGCTCCGAGTTCTAGACYCAAAGAATCTGAAGGTCTCCAAGAGCAGAAGGCGTTCGAAGAGATTCTGACAGGTTGACCTGATTCCAGGAGCCAATATCATCTGCCCCTCTTCATCTTCTTCTTCCCTTTTCTCCAATCTTCCTCCCATTCAACACGAAAACCTGAGAGAGCGGCGAGCGGTCGGTGCGGACGGGCGCATCGCATCTCCACTACGTCTCTCTCCCGCCTCCCTGCGTCTCTTCGTCTCATATGATCACTCGCCACATTCGTTGTTCGCCGGGGCGGTCCTGGGTTCTTCTATTGATTCACTCGCACCCTCCGCGCCCCAGAACGTACTCTCGCATTTTTCTCTTCTCTGTCTTTTTTAGTTAGAATTCTTGGTTCAGTTTGGGGTTTTAGACCTTTGGTGCTGGGTGGGCCGGACCACCCGGGTAGGATGTTCTGGGAGGTCTTAGGCCTTAGGTCTAGGAAAGTCTTCGAGAAGAGGCCATTTTTTGGGTTTAGTGGGCGGAGCTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAGATCGTTTGTTTTACTGG</pcr_primer_p1>
		<pcr_primer_p2>GAAGAGGGGCAGATGATATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTAGATCGTTTGTTTTACTGGGACCTGCTTATCTCAGCTCAGACTGGAGATCAGAAGACGTGCGTTTCTCTCCTAGCTTGTCAGAATCTGGCAAGGAAGCTTCAAATGTCCAGATCAGAGGCTGGAGCTGGCTAAACTGCTCCGAGTTCTAGACCCAAAGAATCTGAAGGTCTCCAAGAGCAGAAGGCGTTCGAAGAGATTCTGACAGGTTGACCTGATTCCAGGAGCCAATATCATCTGCCCCTCTTC</canonical_amplicon>
		<polymorphic_amplicon>GCTAGATCGTTTGTTTTACTGGGACCTGCTTATCTCAGCTCAGACTGGAGATCAGAAGACGTGCGTTTCTCTCCTAGCTTGTCAGAATCTGGCAAGGAAGCTTCAAATGTCCAGATCAGAGGCTGGAGCTGGCTAAACTGCTCCGAGTTCTAGACYCAAAGAATCTGAAGGTCTCCAAGAGCAGAAGGCGTTCGAAGAGATTCTGACAGGTTGACCTGATTCCAGGAGCCAATATCATCTGCCCCTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14246</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>47100</contig_pos>
        <strand>+</strand>
        <context>GGCGTTCGAA[A/G]AGATTCTGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTCTAGACCCAAAGAATCTGAAGGTCTCCAAGAGCAGAAGGCGTTCGAA</left_flank>
        <right_flank>AGATTCTGACAGGTTGACCTGATTCCAGGAGCCAATATCATCTGCCCCTC</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGGGTTCTGGAAGGTGTCTTGAGCTCCCAAAATCTTCCAGAAGCTACCAAATGATTCGATGACCAAGTTTACCAAGAGAATGGCTTATCCAAGCCTAAATCTGGATCTCAGAACTCTGAGAGCTGATAGGAAGGTATGCGACGCTTTCCTAGCTTGTCAGAAGTCTTGGCACGGACTCTACAGTAGGTTTCGGTTGTCTTTAAATGGTCAATGGACGCGACTAGATGAGCCAAAATGGTTCTGGAAGGCGTAAGATCGTTCCTCAAGTTTCCAGAAGCTTCCAGTTGCTTCTGAGACCTAGCTAGATCGTTTGTTTTACTGGGACCTGCTTATCTCAGCTCAGACTGGAGATCAGAAGACGTGCGTTTCTCTCCTAGCTTGTCAGAATCTGGCAAGGAAGCTTCAAATGTCCAGATCAGAGGCTGGAGCTGGCTAAACTGCTCCGAGTTCTAGACCCAAAGAATCTGAAGGTCTCCAAGAGCAGAAGGCGTTCGAAGAGATTCTGACAGGTTGACCTGATTCCAGGAGCCAATATCATCTGCCCCTCTTCATCTTCTTCTTCCCTTTTCTCCAATCTTCCTCCCATTCAACACGAAAACCTGAGAGAGCGGCGAGCGGTCGGTGCGGACGGGCGCATCGCATCTCCACTACGTCTCTCTCCCGCCTCCCTGCGTCTCTTCGTCTCATATGATCACTCGCCACATTCGTTGTTCGCCGGGGCGGTCCTGGGTTCTTCTATTGATTCACTCGCACCCTCCGCGCCCCAGAACGTACTCTCGCATTTTTCTCTTCTCTGTCTTTTTTAGTTAGAATTCTTGGTTCAGTTTGGGGTTTTAGACCTTTGGTGCTGGGTGGGCCGGACCACCCGGGTAGGATGTTCTGGGAGGTCTTAGGCCTTAGGTCTAGGAAAGTCTTCGAGAAGAGGCCATTTTTTGGGTTTAGTGGGCGGAGCTTCTAGATTCTGGATTTCTGGGCTTTCGAGATTCTGGAACCTAGA</canonical>
            <polymorphic>AAATGGGTTCTGGAAGGTGTCTTGAGCTCCCAAAATCTTCCAGAAGCTACCAAATGATTCGATGACCAAGTTTACCAAGAGAATGGCTTATCCAAGCCTAAATCTGGATCTCAGAACTCTGAGAGCTGATAGGAAGGTATGCGACGCTTTCCTAGCTTGTCAGAAGTCTTGGCACGGACTCTACAGTAGGTTTCGGTTGTCTTTAAATGGTCAATGGACGCGACTAGATGAGCCAAAATGGTTCTGGAAGGCGTAAGATCGTTCCTCAAGTTTCCAGAAGCTTCCAGTTGCTTCTGAGACCTAGCTAGATCGTTTGTTTTACTGGGACCTGCTTATCTCAGCTCAGACTGGAGATCAGAAGACGTGCGTTTCTCTCCTAGCTTGTCAGAATCTGGCAAGGAAGCTTCAAATGTCCAGATCAGAGGCTGGAGCTGGCTAAACTGCTCCGAGTTCTAGACCCAAAGAATCTGAAGGTCTCCAAGAGCAGAAGGCGTTCGAARAGATTCTGACAGGTTGACCTGATTCCAGGAGCCAATATCATCTGCCCCTCTTCATCTTCTTCTTCCCTTTTCTCCAATCTTCCTCCCATTCAACACGAAAACCTGAGAGAGCGGCGAGCGGTCGGTGCGGACGGGCGCATCGCATCTCCACTACGTCTCTCTCCCGCCTCCCTGCGTCTCTTCGTCTCATATGATCACTCGCCACATTCGTTGTTCGCCGGGGCGGTCCTGGGTTCTTCTATTGATTCACTCGCACCCTCCGCGCCCCAGAACGTACTCTCGCATTTTTCTCTTCTCTGTCTTTTTTAGTTAGAATTCTTGGTTCAGTTTGGGGTTTTAGACCTTTGGTGCTGGGTGGGCCGGACCACCCGGGTAGGATGTTCTGGGAGGTCTTAGGCCTTAGGTCTAGGAAAGTCTTCGAGAAGAGGCCATTTTTTGGGTTTAGTGGGCGGAGCTTCTAGATTCTGGATTTCTGGGCTTTCGAGATTCTGGAACCTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAGATCGTTTGTTTTACTGG</pcr_primer_p1>
		<pcr_primer_p2>GAAGAGGGGCAGATGATATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTAGATCGTTTGTTTTACTGGGACCTGCTTATCTCAGCTCAGACTGGAGATCAGAAGACGTGCGTTTCTCTCCTAGCTTGTCAGAATCTGGCAAGGAAGCTTCAAATGTCCAGATCAGAGGCTGGAGCTGGCTAAACTGCTCCGAGTTCTAGACCCAAAGAATCTGAAGGTCTCCAAGAGCAGAAGGCGTTCGAAGAGATTCTGACAGGTTGACCTGATTCCAGGAGCCAATATCATCTGCCCCTCTTC</canonical_amplicon>
		<polymorphic_amplicon>GCTAGATCGTTTGTTTTACTGGGACCTGCTTATCTCAGCTCAGACTGGAGATCAGAAGACGTGCGTTTCTCTCCTAGCTTGTCAGAATCTGGCAAGGAAGCTTCAAATGTCCAGATCAGAGGCTGGAGCTGGCTAAACTGCTCCGAGTTCTAGACCCAAAGAATCTGAAGGTCTCCAAGAGCAGAAGGCGTTCGAARAGATTCTGACAGGTTGACCTGATTCCAGGAGCCAATATCATCTGCCCCTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14247</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>47271</contig_pos>
        <strand>+</strand>
        <context>CTCCCGCCTC[C/T]CTGCGTCTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCGGTGCGGACGGGCGCATCGCATCTCCACTACGTCTCTCTCCCGCCTC</left_flank>
        <right_flank>CTGCGTCTCTTCGTCTCATATGATCACTCGCCACATTCGTTGTTCGCCGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCACGGACTCTACAGTAGGTTTCGGTTGTCTTTAAATGGTCAATGGACGCGACTAGATGAGCCAAAATGGTTCTGGAAGGCGTAAGATCGTTCCTCAAGTTTCCAGAAGCTTCCAGTTGCTTCTGAGACCTAGCTAGATCGTTTGTTTTACTGGGACCTGCTTATCTCAGCTCAGACTGGAGATCAGAAGACGTGCGTTTCTCTCCTAGCTTGTCAGAATCTGGCAAGGAAGCTTCAAATGTCCAGATCAGAGGCTGGAGCTGGCTAAACTGCTCCGAGTTCTAGACCCAAAGAATCTGAAGGTCTCCAAGAGCAGAAGGCGTTCGAAGAGATTCTGACAGGTTGACCTGATTCCAGGAGCCAATATCATCTGCCCCTCTTCATCTTCTTCTTCCCTTTTCTCCAATCTTCCTCCCATTCAACACGAAAACCTGAGAGAGCGGCGAGCGGTCGGTGCGGACGGGCGCATCGCATCTCCACTACGTCTCTCTCCCGCCTCCCTGCGTCTCTTCGTCTCATATGATCACTCGCCACATTCGTTGTTCGCCGGGGCGGTCCTGGGTTCTTCTATTGATTCACTCGCACCCTCCGCGCCCCAGAACGTACTCTCGCATTTTTCTCTTCTCTGTCTTTTTTAGTTAGAATTCTTGGTTCAGTTTGGGGTTTTAGACCTTTGGTGCTGGGTGGGCCGGACCACCCGGGTAGGATGTTCTGGGAGGTCTTAGGCCTTAGGTCTAGGAAAGTCTTCGAGAAGAGGCCATTTTTTGGGTTTAGTGGGCGGAGCTTCTAGATTCTGGATTTCTGGGCTTTCGAGATTCTGGAACCTAGAACTGCGGCTTCCTGGATTCTTGGACTCTTGATCTCTGAAATTCTGAAAACCTGGATTCTGGATCTCTAGATCCTTGGATTCTAGAACCTTGAGTTTCAGGATTTCCAGCATTCTAGAACCTGGGGATCCTGGATTTTTAGGATCCTGAATTTTGGAATTTGAAGATTCTGG</canonical>
            <polymorphic>GCACGGACTCTACAGTAGGTTTCGGTTGTCTTTAAATGGTCAATGGACGCGACTAGATGAGCCAAAATGGTTCTGGAAGGCGTAAGATCGTTCCTCAAGTTTCCAGAAGCTTCCAGTTGCTTCTGAGACCTAGCTAGATCGTTTGTTTTACTGGGACCTGCTTATCTCAGCTCAGACTGGAGATCAGAAGACGTGCGTTTCTCTCCTAGCTTGTCAGAATCTGGCAAGGAAGCTTCAAATGTCCAGATCAGAGGCTGGAGCTGGCTAAACTGCTCCGAGTTCTAGACCCAAAGAATCTGAAGGTCTCCAAGAGCAGAAGGCGTTCGAAGAGATTCTGACAGGTTGACCTGATTCCAGGAGCCAATATCATCTGCCCCTCTTCATCTTCTTCTTCCCTTTTCTCCAATCTTCCTCCCATTCAACACGAAAACCTGAGAGAGCGGCGAGCGGTCGGTGCGGACGGGCGCATCGCATCTCCACTACGTCTCTCTCCCGCCTCYCTGCGTCTCTTCGTCTCATATGATCACTCGCCACATTCGTTGTTCGCCGGGGCGGTCCTGGGTTCTTCTATTGATTCACTCGCACCCTCCGCGCCCCAGAACGTACTCTCGCATTTTTCTCTTCTCTGTCTTTTTTAGTTAGAATTCTTGGTTCAGTTTGGGGTTTTAGACCTTTGGTGCTGGGTGGGCCGGACCACCCGGGTAGGATGTTCTGGGAGGTCTTAGGCCTTAGGTCTAGGAAAGTCTTCGAGAAGAGGCCATTTTTTGGGTTTAGTGGGCGGAGCTTCTAGATTCTGGATTTCTGGGCTTTCGAGATTCTGGAACCTAGAACTGCGGCTTCCTGGATTCTTGGACTCTTGATCTCTGAAATTCTGAAAACCTGGATTCTGGATCTCTAGATCCTTGGATTCTAGAACCTTGAGTTTCAGGATTTCCAGCATTCTAGAACCTGGGGATCCTGGATTTTTAGGATCCTGAATTTTGGAATTTGAAGATTCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCAACACGAAAACCTGAG</pcr_primer_p1>
		<pcr_primer_p2>CAAACTGAACCAAGAATTCTAAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATTCAACACGAAAACCTGAGAGAGCGGCGAGCGGTCGGTGCGGACGGGCGCATCGCATCTCCACTACGTCTCTCTCCCGCCTCCCTGCGTCTCTTCGTCTCATATGATCACTCGCCACATTCGTTGTTCGCCGGGGCGGTCCTGGGTTCTTCTATTGATTCACTCGCACCCTCCGCGCCCCAGAACGTACTCTCGCATTTTTCTCTTCTCTGTCTTTTTTAGTTAGAATTCTTGGTTCAGTTTG</canonical_amplicon>
		<polymorphic_amplicon>ATTCAACACGAAAACCTGAGAGAGCGGCGAGCGGTCGGTGCGGACGGGCGCATCGCATCTCCACTACGTCTCTCTCCCGCCTCYCTGCGTCTCTTCGTCTCATATGATCACTCGCCACATTCGTTGTTCGCCGGGGCGGTCCTGGGTTCTTCTATTGATTCACTCGCACCCTCCGCGCCCCAGAACGTACTCTCGCATTTTTCTCTTCTCTGTCTTTTTTAGTTAGAATTCTTGGTTCAGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14248</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>47305</contig_pos>
        <strand>+</strand>
        <context>TCACTCGCCA[C/T]ATTCGTTGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCTCTCTCCCGCCTCCCTGCGTCTCTTCGTCTCATATGATCACTCGCCA</left_flank>
        <right_flank>ATTCGTTGTTCGCCGGGGCGGTCCTGGGTTCTTCTATTGATTCACTCGCA</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGGTCAATGGACGCGACTAGATGAGCCAAAATGGTTCTGGAAGGCGTAAGATCGTTCCTCAAGTTTCCAGAAGCTTCCAGTTGCTTCTGAGACCTAGCTAGATCGTTTGTTTTACTGGGACCTGCTTATCTCAGCTCAGACTGGAGATCAGAAGACGTGCGTTTCTCTCCTAGCTTGTCAGAATCTGGCAAGGAAGCTTCAAATGTCCAGATCAGAGGCTGGAGCTGGCTAAACTGCTCCGAGTTCTAGACCCAAAGAATCTGAAGGTCTCCAAGAGCAGAAGGCGTTCGAAGAGATTCTGACAGGTTGACCTGATTCCAGGAGCCAATATCATCTGCCCCTCTTCATCTTCTTCTTCCCTTTTCTCCAATCTTCCTCCCATTCAACACGAAAACCTGAGAGAGCGGCGAGCGGTCGGTGCGGACGGGCGCATCGCATCTCCACTACGTCTCTCTCCCGCCTCCCTGCGTCTCTTCGTCTCATATGATCACTCGCCACATTCGTTGTTCGCCGGGGCGGTCCTGGGTTCTTCTATTGATTCACTCGCACCCTCCGCGCCCCAGAACGTACTCTCGCATTTTTCTCTTCTCTGTCTTTTTTAGTTAGAATTCTTGGTTCAGTTTGGGGTTTTAGACCTTTGGTGCTGGGTGGGCCGGACCACCCGGGTAGGATGTTCTGGGAGGTCTTAGGCCTTAGGTCTAGGAAAGTCTTCGAGAAGAGGCCATTTTTTGGGTTTAGTGGGCGGAGCTTCTAGATTCTGGATTTCTGGGCTTTCGAGATTCTGGAACCTAGAACTGCGGCTTCCTGGATTCTTGGACTCTTGATCTCTGAAATTCTGAAAACCTGGATTCTGGATCTCTAGATCCTTGGATTCTAGAACCTTGAGTTTCAGGATTTCCAGCATTCTAGAACCTGGGGATCCTGGATTTTTAGGATCCTGAATTTTGGAATTTGAAGATTCTGGATTCCTAGGAAACTCTGCGGAATTTCACAACTTT</canonical>
            <polymorphic>AATGGTCAATGGACGCGACTAGATGAGCCAAAATGGTTCTGGAAGGCGTAAGATCGTTCCTCAAGTTTCCAGAAGCTTCCAGTTGCTTCTGAGACCTAGCTAGATCGTTTGTTTTACTGGGACCTGCTTATCTCAGCTCAGACTGGAGATCAGAAGACGTGCGTTTCTCTCCTAGCTTGTCAGAATCTGGCAAGGAAGCTTCAAATGTCCAGATCAGAGGCTGGAGCTGGCTAAACTGCTCCGAGTTCTAGACCCAAAGAATCTGAAGGTCTCCAAGAGCAGAAGGCGTTCGAAGAGATTCTGACAGGTTGACCTGATTCCAGGAGCCAATATCATCTGCCCCTCTTCATCTTCTTCTTCCCTTTTCTCCAATCTTCCTCCCATTCAACACGAAAACCTGAGAGAGCGGCGAGCGGTCGGTGCGGACGGGCGCATCGCATCTCCACTACGTCTCTCTCCCGCCTCCCTGCGTCTCTTCGTCTCATATGATCACTCGCCAYATTCGTTGTTCGCCGGGGCGGTCCTGGGTTCTTCTATTGATTCACTCGCACCCTCCGCGCCCCAGAACGTACTCTCGCATTTTTCTCTTCTCTGTCTTTTTTAGTTAGAATTCTTGGTTCAGTTTGGGGTTTTAGACCTTTGGTGCTGGGTGGGCCGGACCACCCGGGTAGGATGTTCTGGGAGGTCTTAGGCCTTAGGTCTAGGAAAGTCTTCGAGAAGAGGCCATTTTTTGGGTTTAGTGGGCGGAGCTTCTAGATTCTGGATTTCTGGGCTTTCGAGATTCTGGAACCTAGAACTGCGGCTTCCTGGATTCTTGGACTCTTGATCTCTGAAATTCTGAAAACCTGGATTCTGGATCTCTAGATCCTTGGATTCTAGAACCTTGAGTTTCAGGATTTCCAGCATTCTAGAACCTGGGGATCCTGGATTTTTAGGATCCTGAATTTTGGAATTTGAAGATTCTGGATTCCTAGGAAACTCTGCGGAATTTCACAACTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>251 229 161 95 80 47 45 32 23 10 7 7 7 6</canonical_bands>
                <polymorphic_bands>251 229 161 95 80 52 47 32 23 10 7 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCAACACGAAAACCTGAG</pcr_primer_p1>
		<pcr_primer_p2>CAAACTGAACCAAGAATTCTAAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATTCAACACGAAAACCTGAGAGAGCGGCGAGCGGTCGGTGCGGACGGGCGCATCGCATCTCCACTACGTCTCTCTCCCGCCTCCCTGCGTCTCTTCGTCTCATATGATCACTCGCCACATTCGTTGTTCGCCGGGGCGGTCCTGGGTTCTTCTATTGATTCACTCGCACCCTCCGCGCCCCAGAACGTACTCTCGCATTTTTCTCTTCTCTGTCTTTTTTAGTTAGAATTCTTGGTTCAGTTTG</canonical_amplicon>
		<polymorphic_amplicon>ATTCAACACGAAAACCTGAGAGAGCGGCGAGCGGTCGGTGCGGACGGGCGCATCGCATCTCCACTACGTCTCTCTCCCGCCTCCCTGCGTCTCTTCGTCTCATATGATCACTCGCCAYATTCGTTGTTCGCCGGGGCGGTCCTGGGTTCTTCTATTGATTCACTCGCACCCTCCGCGCCCCAGAACGTACTCTCGCATTTTTCTCTTCTCTGTCTTTTTTAGTTAGAATTCTTGGTTCAGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14249</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>48440</contig_pos>
        <strand>+</strand>
        <context>AAAKTTTAGG[C/T]TCCGCCCCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGCTCCTCGCTTTTTCTGCTTCTGCTCAATTTCCTTTGGAAAGTTTAGG</left_flank>
        <right_flank>TCCGCCCCTTCTTTCGGTCCTACTGTAGGCTTCATTTTCTCTGCGCTCTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCTTCTTCTCGGAAATTTTCTGGGGTCTCATTTGCAAAGGAAGGAGCCAAGAAGGCACACATTTTTCCCTCTAACCTAAATTTTTCTCTAAATCTCTCACTTTCTTCTTTCTCTCCGCTGGAGGAGCGAGACGACGACTACGGTAGTTTTATGCCATGGTCTTGAGGCTGTGAAAGTTGCTGCTGGCCCAGAATCCCAAACTAGGCCACCGCCTTTTAGCTGATCTAGCTTTAGCTAGCTAAATTTTGCTCAGGCGAAAACCTAGGCCACAAGCCGATGGCCTAGAATTCCCACGGCCAGGTCGCAATGATACAGTGGCCTAGAATCCGGGAGCTAGAAAAACTAGGTCATCCCGGTCATGCATTTTTCTACCGTACCCCACAAAAAGGGCGGAGCCTATTTTGACACACACACACACACATACAAACACAGAACAACCCATAATTTTGGCTCCTCGCTTTTTCTGCTTCTGCTCAATTTCCTTTGGAAAGTTTAGGCTCCGCCCCTTCTTTCGGTCCTACTGTAGGCTTCATTTTCTCTGCGCTCTCTCATCTCCCCACACTCTCTCACCCTCTCTCTCTCTCTCTCTCTGCCTTTATCATTTTCTAATTAAGTATCAATAAATCAAATTTATATATTCCTCTTCTTCTTCTAGAAAACTTTTTTTTGGGCAGAAGAGACAGTGAGAGAGTGTGAGAGAGCGCAGAGAAAAAAAGAACACAGAGAGAGTGAAAAAAACGCGCACGCAACGCACACGCTTTGCGCGCCGCGTGTGTAGAGAGAGCGAGAGTGTGTGCGAGACGAAGAGACGCAGACACTGCCGTATCTCTCTTCTACTCGTTTTTATCGGTTTTCGCCTTCTCCTTCTAGCCATTTCCCCTATTTTTCTTCTGTTTCTGTTTTTTTTCAGTCCCTTTGTCTTCTAAATATGGGCGGGGCCTAGAAATCCCCCTAGGTGGAATTCTAGGTCATCAAATGCTAAAAGGATTACTGTAGAC</canonical>
            <polymorphic>CTTCTTCTTCTCGGAAATTTTCTGGGGTCTCATTTGCAAAGGAAGGAGCCAAGAAGGCACACATTTTTCCCTCTAACCTAAATTTTTCTCTAAATCTCTCACTTTCTTCTTTCTCTCCGCTGGAGGAGCGAGACGACGACTACGGTAGTTTTATGCCATGGTCTTGAGGCTGTGAAAGTTGCTGCTGGCCCAGAATCCCAAACTAGGCCACCGCCTTTTAGCTGATCTAGCTTTAGCTAGCTAAATTTTGCTCAGGCGAAAACCTAGGCCACAAGCCGATGGCCTAGAATTCCCACGGCCAGGTCGCAATGATACAGTGGCCTAGAATCCGGGAGCTAGAAAAACTAGGTCATCCCGGTCATGCATTTTTCTACCGTACCCCACAAAAAGGGCGGAGCCTATTTTGACACACACACACACACATACAAACACAGAACAACCCATAATTTTGGCTCCTCGCTTTTTCTGCTTCTGCTCAATTTCCTTTGGAAAGTTTAGGYTCCGCCCCTTCTTTCGGTCCTACTGTAGGCTTCATTTTCTCTGCGCTCTCTCATCTCCCCACACTCTCTCACCCTCTCTCTCTCTCTCTCTCTGCCTTTATCATTTTCTAATTAAGTATCAATAAATCAAATTTATATATTCCTCTTCTTCTTCTAGAAAACTTTTTTTTGGGCAGAAGAGACAGTGAGAGAGTGTGAGAGAGCGCAGAGAAAAAAAGAACACAGAGAGAGTGAAAAAAACGCGCACGCAACGCACACGCTTTGCGCGCCGCGTGTGTAGAGAGAGCGAGAGTGTGTGCGAGACGAAGAGACGCAGACACTGCCGTATCTCTCTTCTACTCGTTTTTATCGGTTTTCGCCTTCTCCTTCTAGCCATTTCCCCTATTTTTCTTCTGTTTCTGTTTTTTTTCAGTCCCTTTGTCTTCTAAATATGGGCGGGGCCTAGAAATCCCCCTAGGTGGAATTCTAGGTCATCAAATGCTAAAAGGATTACTGTAGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>343 121 68 62 60 55 48 47 30 28 22 19 19 16 15 14 9 7 7 6 4</canonical_bands>
                <polymorphic_bands>343 121 77 68 62 60 55 48 28 22 19 19 16 15 14 9 7 7 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGCATTTTTCTACCGTACC</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTTCTAGAAGAAGAAGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>304</pcr_amplicon_size>
		<canonical_amplicon>ATGCATTTTTCTACCGTACCCCACAAAAAGGGCGGAGCCTATTTTGACACACACACACACACATACAAACACAGAACAACCCATAATTTTGGCTCCTCGCTTTTTCTGCTTCTGCTCAATTTCCTTTGGAAAGTTTAGGCTCCGCCCCTTCTTTCGGTCCTACTGTAGGCTTCATTTTCTCTGCGCTCTCTCATCTCCCCACACTCTCTCACCCTCTCTCTCTCTCTCTCTCTGCCTTTATCATTTTCTAATTAAGTATCAATAAATCAAATTTATATATTCCTCTTCTTCTTCTAGAAAACTT</canonical_amplicon>
		<polymorphic_amplicon>ATGCATTTTTCTACCGTACCCCACAAAAAGGGCGGAGCCTATTTTGACACACACACACACACATACAAACACAGAACAACCCATAATTTTGGCTCCTCGCTTTTTCTGCTTCTGCTCAATTTCCTTTGGAAAGTTTAGGYTCCGCCCCTTCTTTCGGTCCTACTGTAGGCTTCATTTTCTCTGCGCTCTCTCATCTCCCCACACTCTCTCACCCTCTCTCTCTCTCTCTCTCTGCCTTTATCATTTTCTAATTAAGTATCAATAAATCAAATTTATATATTCCTCTTCTTCTTCTAGAAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14250</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>48433</contig_pos>
        <strand>+</strand>
        <context>CCTTTGGAAA[G/T]TTTAGGYTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATAATTTTGGCTCCTCGCTTTTTCTGCTTCTGCTCAATTTCCTTTGGAAA</left_flank>
        <right_flank>TTTAGGCTCCGCCCCTTCTTTCGGTCCTACTGTAGGCTTCATTTTCTCTG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCTTCTTCTTCTTCTCGGAAATTTTCTGGGGTCTCATTTGCAAAGGAAGGAGCCAAGAAGGCACACATTTTTCCCTCTAACCTAAATTTTTCTCTAAATCTCTCACTTTCTTCTTTCTCTCCGCTGGAGGAGCGAGACGACGACTACGGTAGTTTTATGCCATGGTCTTGAGGCTGTGAAAGTTGCTGCTGGCCCAGAATCCCAAACTAGGCCACCGCCTTTTAGCTGATCTAGCTTTAGCTAGCTAAATTTTGCTCAGGCGAAAACCTAGGCCACAAGCCGATGGCCTAGAATTCCCACGGCCAGGTCGCAATGATACAGTGGCCTAGAATCCGGGAGCTAGAAAAACTAGGTCATCCCGGTCATGCATTTTTCTACCGTACCCCACAAAAAGGGCGGAGCCTATTTTGACACACACACACACACATACAAACACAGAACAACCCATAATTTTGGCTCCTCGCTTTTTCTGCTTCTGCTCAATTTCCTTTGGAAAGTTTAGGCTCCGCCCCTTCTTTCGGTCCTACTGTAGGCTTCATTTTCTCTGCGCTCTCTCATCTCCCCACACTCTCTCACCCTCTCTCTCTCTCTCTCTCTGCCTTTATCATTTTCTAATTAAGTATCAATAAATCAAATTTATATATTCCTCTTCTTCTTCTAGAAAACTTTTTTTTGGGCAGAAGAGACAGTGAGAGAGTGTGAGAGAGCGCAGAGAAAAAAAGAACACAGAGAGAGTGAAAAAAACGCGCACGCAACGCACACGCTTTGCGCGCCGCGTGTGTAGAGAGAGCGAGAGTGTGTGCGAGACGAAGAGACGCAGACACTGCCGTATCTCTCTTCTACTCGTTTTTATCGGTTTTCGCCTTCTCCTTCTAGCCATTTCCCCTATTTTTCTTCTGTTTCTGTTTTTTTTCAGTCCCTTTGTCTTCTAAATATGGGCGGGGCCTAGAAATCCCCCTAGGTGGAATTCTAGGTCATCAAATGCTAAAAGGATTAC</canonical>
            <polymorphic>TTTCCTTCTTCTTCTTCTCGGAAATTTTCTGGGGTCTCATTTGCAAAGGAAGGAGCCAAGAAGGCACACATTTTTCCCTCTAACCTAAATTTTTCTCTAAATCTCTCACTTTCTTCTTTCTCTCCGCTGGAGGAGCGAGACGACGACTACGGTAGTTTTATGCCATGGTCTTGAGGCTGTGAAAGTTGCTGCTGGCCCAGAATCCCAAACTAGGCCACCGCCTTTTAGCTGATCTAGCTTTAGCTAGCTAAATTTTGCTCAGGCGAAAACCTAGGCCACAAGCCGATGGCCTAGAATTCCCACGGCCAGGTCGCAATGATACAGTGGCCTAGAATCCGGGAGCTAGAAAAACTAGGTCATCCCGGTCATGCATTTTTCTACCGTACCCCACAAAAAGGGCGGAGCCTATTTTGACACACACACACACACATACAAACACAGAACAACCCATAATTTTGGCTCCTCGCTTTTTCTGCTTCTGCTCAATTTCCTTTGGAAAKTTTAGGCTCCGCCCCTTCTTTCGGTCCTACTGTAGGCTTCATTTTCTCTGCGCTCTCTCATCTCCCCACACTCTCTCACCCTCTCTCTCTCTCTCTCTCTGCCTTTATCATTTTCTAATTAAGTATCAATAAATCAAATTTATATATTCCTCTTCTTCTTCTAGAAAACTTTTTTTTGGGCAGAAGAGACAGTGAGAGAGTGTGAGAGAGCGCAGAGAAAAAAAGAACACAGAGAGAGTGAAAAAAACGCGCACGCAACGCACACGCTTTGCGCGCCGCGTGTGTAGAGAGAGCGAGAGTGTGTGCGAGACGAAGAGACGCAGACACTGCCGTATCTCTCTTCTACTCGTTTTTATCGGTTTTCGCCTTCTCCTTCTAGCCATTTCCCCTATTTTTCTTCTGTTTCTGTTTTTTTTCAGTCCCTTTGTCTTCTAAATATGGGCGGGGCCTAGAAATCCCCCTAGGTGGAATTCTAGGTCATCAAATGCTAAAAGGATTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGCATTTTTCTACCGTACC</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTTCTAGAAGAAGAAGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>304</pcr_amplicon_size>
		<canonical_amplicon>ATGCATTTTTCTACCGTACCCCACAAAAAGGGCGGAGCCTATTTTGACACACACACACACACATACAAACACAGAACAACCCATAATTTTGGCTCCTCGCTTTTTCTGCTTCTGCTCAATTTCCTTTGGAAAGTTTAGGCTCCGCCCCTTCTTTCGGTCCTACTGTAGGCTTCATTTTCTCTGCGCTCTCTCATCTCCCCACACTCTCTCACCCTCTCTCTCTCTCTCTCTCTGCCTTTATCATTTTCTAATTAAGTATCAATAAATCAAATTTATATATTCCTCTTCTTCTTCTAGAAAACTT</canonical_amplicon>
		<polymorphic_amplicon>ATGCATTTTTCTACCGTACCCCACAAAAAGGGCGGAGCCTATTTTGACACACACACACACACATACAAACACAGAACAACCCATAATTTTGGCTCCTCGCTTTTTCTGCTTCTGCTCAATTTCCTTTGGAAAKTTTAGGCTCCGCCCCTTCTTTCGGTCCTACTGTAGGCTTCATTTTCTCTGCGCTCTCTCATCTCCCCACACTCTCTCACCCTCTCTCTCTCTCTCTCTCTGCCTTTATCATTTTCTAATTAAGTATCAATAAATCAAATTTATATATTCCTCTTCTTCTTCTAGAAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14274</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>48335</contig_pos>
        <strand>+</strand>
        <context>AAAAAGGGCG[A/G]AGCCTATTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAGGTCATCCCGGTCATGCATTTTTCTACCGTACCCCACAAAAAGGGCG</left_flank>
        <right_flank>AGCCTATTTTGACACACACACACACACATACAAACACAGAACAACCCATA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCTGAAAGTCTGGGACCCACTTTCCCTAGATGAACCTCCTTTCCTCTGTGCCTTTTTGCACTCTCCGTCGTTCTTTTTTTTTGGCCCCGCCCCCTTTTTCCTTCTTCTTCTTCTCGGAAATTTTCTGGGGTCTCATTTGCAAAGGAAGGAGCCAAGAAGGCACACATTTTTCCCTCTAACCTAAATTTTTCTCTAAATCTCTCACTTTCTTCTTTCTCTCCGCTGGAGGAGCGAGACGACGACTACGGTAGTTTTATGCCATGGTCTTGAGGCTGTGAAAGTTGCTGCTGGCCCAGAATCCCAAACTAGGCCACCGCCTTTTAGCTGATCTAGCTTTAGCTAGCTAAATTTTGCTCAGGCGAAAACCTAGGCCACAAGCCGATGGCCTAGAATTCCCACGGCCAGGTCGCAATGATACAGTGGCCTAGAATCCGGGAGCTAGAAAAACTAGGTCATCCCGGTCATGCATTTTTCTACCGTACCCCACAAAAAGGGCGGAGCCTATTTTGACACACACACACACACATACAAACACAGAACAACCCATAATTTTGGCTCCTCGCTTTTTCTGCTTCTGCTCAATTTCCTTTGGAAAGTTTAGGCTCCGCCCCTTCTTTCGGTCCTACTGTAGGCTTCATTTTCTCTGCGCTCTCTCATCTCCCCACACTCTCTCACCCTCTCTCTCTCTCTCTCTCTGCCTTTATCATTTTCTAATTAAGTATCAATAAATCAAATTTATATATTCCTCTTCTTCTTCTAGAAAACTTTTTTTTGGGCAGAAGAGACAGTGAGAGAGTGTGAGAGAGCGCAGAGAAAAAAAGAACACAGAGAGAGTGAAAAAAACGCGCACGCAACGCACACGCTTTGCGCGCCGCGTGTGTAGAGAGAGCGAGAGTGTGTGCGAGACGAAGAGACGCAGACACTGCCGTATCTCTCTTCTACTCGTTTTTATCGGTTTTCGCCTTCTCCTTCTAGCCATTTCCCCTATTTTTCTTCTG</canonical>
            <polymorphic>AATCTGAAAGTCTGGGACCCACTTTCCCTAGATGAACCTCCTTTCCTCTGTGCCTTTTTGCACTCTCCGTCGTTCTTTTTTTTTGGCCCCGCCCCCTTTTTCCTTCTTCTTCTTCTCGGAAATTTTCTGGGGTCTCATTTGCAAAGGAAGGAGCCAAGAAGGCACACATTTTTCCCTCTAACCTAAATTTTTCTCTAAATCTCTCACTTTCTTCTTTCTCTCCGCTGGAGGAGCGAGACGACGACTACGGTAGTTTTATGCCATGGTCTTGAGGCTGTGAAAGTTGCTGCTGGCCCAGAATCCCAAACTAGGCCACCGCCTTTTAGCTGATCTAGCTTTAGCTAGCTAAATTTTGCTCAGGCGAAAACCTAGGCCACAAGCCGATGGCCTAGAATTCCCACGGCCAGGTCGCAATGATACAGTGGCCTAGAATCCGGGAGCTAGAAAAACTAGGTCATCCCGGTCATGCATTTTTCTACCGTACCCCACAAAAAGGGCGRAGCCTATTTTGACACACACACACACACATACAAACACAGAACAACCCATAATTTTGGCTCCTCGCTTTTTCTGCTTCTGCTCAATTTCCTTTGGAAAGTTTAGGCTCCGCCCCTTCTTTCGGTCCTACTGTAGGCTTCATTTTCTCTGCGCTCTCTCATCTCCCCACACTCTCTCACCCTCTCTCTCTCTCTCTCTCTGCCTTTATCATTTTCTAATTAAGTATCAATAAATCAAATTTATATATTCCTCTTCTTCTTCTAGAAAACTTTTTTTTGGGCAGAAGAGACAGTGAGAGAGTGTGAGAGAGCGCAGAGAAAAAAAGAACACAGAGAGAGTGAAAAAAACGCGCACGCAACGCACACGCTTTGCGCGCCGCGTGTGTAGAGAGAGCGAGAGTGTGTGCGAGACGAAGAGACGCAGACACTGCCGTATCTCTCTTCTACTCGTTTTTATCGGTTTTCGCCTTCTCCTTCTAGCCATTTCCCCTATTTTTCTTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>267 180 133 126 111 94 89</canonical_bands>
                <polymorphic_bands>291 267 133 126 94 89</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>395 349 71 65 57 47 16</canonical_bands>
                <polymorphic_bands>406 395 71 65 47 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGATACAGTGGCCTAGAATC</pcr_primer_p1>
		<pcr_primer_p2>CAGAGAAAATGAAGCCTACAG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>AATGATACAGTGGCCTAGAATCCGGGAGCTAGAAAAACTAGGTCATCCCGGTCATGCATTTTTCTACCGTACCCCACAAAAAGGGCGGAGCCTATTTTGACACACACACACACACATACAAACACAGAACAACCCATAATTTTGGCTCCTCGCTTTTTCTGCTTCTGCTCAATTTCCTTTGGAAAGTTTAGGCTCCGCCCCTTCTTTCGGTCCTACTGTAGGCTTCATTTTCTCTG</canonical_amplicon>
		<polymorphic_amplicon>AATGATACAGTGGCCTAGAATCCGGGAGCTAGAAAAACTAGGTCATCCCGGTCATGCATTTTTCTACCGTACCCCACAAAAAGGGCGRAGCCTATTTTGACACACACACACACACATACAAACACAGAACAACCCATAATTTTGGCTCCTCGCTTTTTCTGCTTCTGCTCAATTTCCTTTGGAAAGTTTAGGCTCCGCCCCTTCTTTCGGTCCTACTGTAGGCTTCATTTTCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14275</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>48221</contig_pos>
        <strand>+</strand>
        <context>ACAAGCCGAT[A/G]GCCTAGAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTAGCTAGCTAAATTTTGCTCAGGCGAAAACCTAGGCCACAAGCCGAT</left_flank>
        <right_flank>GCCTAGAATTCCCACGGCCAGGTCGCAATGATACAGTGGCCTAGAATCCG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGGATCCTGGATTTTTAGGATCCTGAATTTTGGAATTTGAAGATTCTGGATTCCTAGGAAACTCTGCGGAATTTCACAACTTTTGCGATTTTCGGATTTTAGGAAAATTTGAAAATCTGAAAGTCTGGGACCCACTTTCCCTAGATGAACCTCCTTTCCTCTGTGCCTTTTTGCACTCTCCGTCGTTCTTTTTTTTTGGCCCCGCCCCCTTTTTCCTTCTTCTTCTTCTCGGAAATTTTCTGGGGTCTCATTTGCAAAGGAAGGAGCCAAGAAGGCACACATTTTTCCCTCTAACCTAAATTTTTCTCTAAATCTCTCACTTTCTTCTTTCTCTCCGCTGGAGGAGCGAGACGACGACTACGGTAGTTTTATGCCATGGTCTTGAGGCTGTGAAAGTTGCTGCTGGCCCAGAATCCCAAACTAGGCCACCGCCTTTTAGCTGATCTAGCTTTAGCTAGCTAAATTTTGCTCAGGCGAAAACCTAGGCCACAAGCCGATGGCCTAGAATTCCCACGGCCAGGTCGCAATGATACAGTGGCCTAGAATCCGGGAGCTAGAAAAACTAGGTCATCCCGGTCATGCATTTTTCTACCGTACCCCACAAAAAGGGCGGAGCCTATTTTGACACACACACACACACATACAAACACAGAACAACCCATAATTTTGGCTCCTCGCTTTTTCTGCTTCTGCTCAATTTCCTTTGGAAAGTTTAGGCTCCGCCCCTTCTTTCGGTCCTACTGTAGGCTTCATTTTCTCTGCGCTCTCTCATCTCCCCACACTCTCTCACCCTCTCTCTCTCTCTCTCTCTGCCTTTATCATTTTCTAATTAAGTATCAATAAATCAAATTTATATATTCCTCTTCTTCTTCTAGAAAACTTTTTTTTGGGCAGAAGAGACAGTGAGAGAGTGTGAGAGAGCGCAGAGAAAAAAAGAACACAGAGAGAGTGAAAAAAACGCGCACGCAACGCACACGCTTTGCGCGCCGCGTGTGTAGA</canonical>
            <polymorphic>GGGGATCCTGGATTTTTAGGATCCTGAATTTTGGAATTTGAAGATTCTGGATTCCTAGGAAACTCTGCGGAATTTCACAACTTTTGCGATTTTCGGATTTTAGGAAAATTTGAAAATCTGAAAGTCTGGGACCCACTTTCCCTAGATGAACCTCCTTTCCTCTGTGCCTTTTTGCACTCTCCGTCGTTCTTTTTTTTTGGCCCCGCCCCCTTTTTCCTTCTTCTTCTTCTCGGAAATTTTCTGGGGTCTCATTTGCAAAGGAAGGAGCCAAGAAGGCACACATTTTTCCCTCTAACCTAAATTTTTCTCTAAATCTCTCACTTTCTTCTTTCTCTCCGCTGGAGGAGCGAGACGACGACTACGGTAGTTTTATGCCATGGTCTTGAGGCTGTGAAAGTTGCTGCTGGCCCAGAATCCCAAACTAGGCCACCGCCTTTTAGCTGATCTAGCTTTAGCTAGCTAAATTTTGCTCAGGCGAAAACCTAGGCCACAAGCCGATRGCCTAGAATTCCCACGGCCAGGTCGCAATGATACAGTGGCCTAGAATCCGGGAGCTAGAAAAACTAGGTCATCCCGGTCATGCATTTTTCTACCGTACCCCACAAAAAGGGCGGAGCCTATTTTGACACACACACACACACATACAAACACAGAACAACCCATAATTTTGGCTCCTCGCTTTTTCTGCTTCTGCTCAATTTCCTTTGGAAAGTTTAGGCTCCGCCCCTTCTTTCGGTCCTACTGTAGGCTTCATTTTCTCTGCGCTCTCTCATCTCCCCACACTCTCTCACCCTCTCTCTCTCTCTCTCTCTGCCTTTATCATTTTCTAATTAAGTATCAATAAATCAAATTTATATATTCCTCTTCTTCTTCTAGAAAACTTTTTTTTGGGCAGAAGAGACAGTGAGAGAGTGTGAGAGAGCGCAGAGAAAAAAAGAACACAGAGAGAGTGAAAAAAACGCGCACGCAACGCACACGCTTTGCGCGCCGCGTGTGTAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>461 207 200 61 22 19 16 14</canonical_bands>
                <polymorphic_bands>461 207 200 61 30 22 19</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>252 200 121 67 62 55 47 30 28 22 19 19 16 15 14 9 7 7 6 4</canonical_bands>
                <polymorphic_bands>252 200 121 67 62 55 47 30 28 23 22 19 19 15 14 9 7 6 4</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>461 426 61 38 14</canonical_bands>
                <polymorphic_bands>461 426 61 52</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGTTTTATGCCATGGTCTTG</pcr_primer_p1>
		<pcr_primer_p2>GTACGGTAGAAAAATGCATGA</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>TAGTTTTATGCCATGGTCTTGAGGCTGTGAAAGTTGCTGCTGGCCCAGAATCCCAAACTAGGCCACCGCCTTTTAGCTGATCTAGCTTTAGCTAGCTAAATTTTGCTCAGGCGAAAACCTAGGCCACAAGCCGATGGCCTAGAATTCCCACGGCCAGGTCGCAATGATACAGTGGCCTAGAATCCGGGAGCTAGAAAAACTAGGTCATCCCGGTCATGCATTTTTCTACCGTAC</canonical_amplicon>
		<polymorphic_amplicon>TAGTTTTATGCCATGGTCTTGAGGCTGTGAAAGTTGCTGCTGGCCCAGAATCCCAAACTAGGCCACCGCCTTTTAGCTGATCTAGCTTTAGCTAGCTAAATTTTGCTCAGGCGAAAACCTAGGCCACAAGCCGATRGCCTAGAATTCCCACGGCCAGGTCGCAATGATACAGTGGCCTAGAATCCGGGAGCTAGAAAAACTAGGTCATCCCGGTCATGCATTTTTCTACCGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14276</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>48148</contig_pos>
        <strand>+</strand>
        <context>CCAAACTAGG[C/T]CACCGCCTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGGTCTTGAGGCTGTGAAAGTTGCTGCTGGCCCAGAATCCCAAACTAGG</left_flank>
        <right_flank>CACCGCCTTTTAGCTGATCTAGCTTTAGCTAGCTAAATTTTGCTCAGGCG</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTGGATTCTGGATCTCTAGATCCTTGGATTCTAGAACCTTGAGTTTCAGGATTTCCAGCATTCTAGAACCTGGGGATCCTGGATTTTTAGGATCCTGAATTTTGGAATTTGAAGATTCTGGATTCCTAGGAAACTCTGCGGAATTTCACAACTTTTGCGATTTTCGGATTTTAGGAAAATTTGAAAATCTGAAAGTCTGGGACCCACTTTCCCTAGATGAACCTCCTTTCCTCTGTGCCTTTTTGCACTCTCCGTCGTTCTTTTTTTTTGGCCCCGCCCCCTTTTTCCTTCTTCTTCTTCTCGGAAATTTTCTGGGGTCTCATTTGCAAAGGAAGGAGCCAAGAAGGCACACATTTTTCCCTCTAACCTAAATTTTTCTCTAAATCTCTCACTTTCTTCTTTCTCTCCGCTGGAGGAGCGAGACGACGACTACGGTAGTTTTATGCCATGGTCTTGAGGCTGTGAAAGTTGCTGCTGGCCCAGAATCCCAAACTAGGCCACCGCCTTTTAGCTGATCTAGCTTTAGCTAGCTAAATTTTGCTCAGGCGAAAACCTAGGCCACAAGCCGATGGCCTAGAATTCCCACGGCCAGGTCGCAATGATACAGTGGCCTAGAATCCGGGAGCTAGAAAAACTAGGTCATCCCGGTCATGCATTTTTCTACCGTACCCCACAAAAAGGGCGGAGCCTATTTTGACACACACACACACACATACAAACACAGAACAACCCATAATTTTGGCTCCTCGCTTTTTCTGCTTCTGCTCAATTTCCTTTGGAAAGTTTAGGCTCCGCCCCTTCTTTCGGTCCTACTGTAGGCTTCATTTTCTCTGCGCTCTCTCATCTCCCCACACTCTCTCACCCTCTCTCTCTCTCTCTCTCTGCCTTTATCATTTTCTAATTAAGTATCAATAAATCAAATTTATATATTCCTCTTCTTCTTCTAGAAAACTTTTTTTTGGGCAGAAGAGACAGTGAGAGAGTGTGAGAGAGCGCAG</canonical>
            <polymorphic>ACCTGGATTCTGGATCTCTAGATCCTTGGATTCTAGAACCTTGAGTTTCAGGATTTCCAGCATTCTAGAACCTGGGGATCCTGGATTTTTAGGATCCTGAATTTTGGAATTTGAAGATTCTGGATTCCTAGGAAACTCTGCGGAATTTCACAACTTTTGCGATTTTCGGATTTTAGGAAAATTTGAAAATCTGAAAGTCTGGGACCCACTTTCCCTAGATGAACCTCCTTTCCTCTGTGCCTTTTTGCACTCTCCGTCGTTCTTTTTTTTTGGCCCCGCCCCCTTTTTCCTTCTTCTTCTTCTCGGAAATTTTCTGGGGTCTCATTTGCAAAGGAAGGAGCCAAGAAGGCACACATTTTTCCCTCTAACCTAAATTTTTCTCTAAATCTCTCACTTTCTTCTTTCTCTCCGCTGGAGGAGCGAGACGACGACTACGGTAGTTTTATGCCATGGTCTTGAGGCTGTGAAAGTTGCTGCTGGCCCAGAATCCCAAACTAGGYCACCGCCTTTTAGCTGATCTAGCTTTAGCTAGCTAAATTTTGCTCAGGCGAAAACCTAGGCCACAAGCCGATGGCCTAGAATTCCCACGGCCAGGTCGCAATGATACAGTGGCCTAGAATCCGGGAGCTAGAAAAACTAGGTCATCCCGGTCATGCATTTTTCTACCGTACCCCACAAAAAGGGCGGAGCCTATTTTGACACACACACACACACATACAAACACAGAACAACCCATAATTTTGGCTCCTCGCTTTTTCTGCTTCTGCTCAATTTCCTTTGGAAAGTTTAGGCTCCGCCCCTTCTTTCGGTCCTACTGTAGGCTTCATTTTCTCTGCGCTCTCTCATCTCCCCACACTCTCTCACCCTCTCTCTCTCTCTCTCTCTGCCTTTATCATTTTCTAATTAAGTATCAATAAATCAAATTTATATATTCCTCTTCTTCTTCTAGAAAACTTTTTTTTGGGCAGAAGAGACAGTGAGAGAGTGTGAGAGAGCGCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>388 273 207 61 22 19 16 14</canonical_bands>
                <polymorphic_bands>388 273 207 80 22 16 14</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>273 179 121 67 62 55 47 30 28 22 19 19 16 15 14 9 7 7 6 4</canonical_bands>
                <polymorphic_bands>273 179 121 67 62 55 47 33 30 28 22 19 16 15 9 7 7 6 4</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>499 388 61 38 14</canonical_bands>
                <polymorphic_bands>560 388 38 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTTTCTCTAAATCTCTCACTTTC</pcr_primer_p1>
		<pcr_primer_p2>GATTCTAGGCCACTGTATCATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTTTTCTCTAAATCTCTCACTTTCTTCTTTCTCTCCGCTGGAGGAGCGAGACGACGACTACGGTAGTTTTATGCCATGGTCTTGAGGCTGTGAAAGTTGCTGCTGGCCCAGAATCCCAAACTAGGCCACCGCCTTTTAGCTGATCTAGCTTTAGCTAGCTAAATTTTGCTCAGGCGAAAACCTAGGCCACAAGCCGATGGCCTAGAATTCCCACGGCCAGGTCGCAATGATACAGTGGCCTAGAATC</canonical_amplicon>
		<polymorphic_amplicon>AATTTTTCTCTAAATCTCTCACTTTCTTCTTTCTCTCCGCTGGAGGAGCGAGACGACGACTACGGTAGTTTTATGCCATGGTCTTGAGGCTGTGAAAGTTGCTGCTGGCCCAGAATCCCAAACTAGGYCACCGCCTTTTAGCTGATCTAGCTTTAGCTAGCTAAATTTTGCTCAGGCGAAAACCTAGGCCACAAGCCGATGGCCTAGAATTCCCACGGCCAGGTCGCAATGATACAGTGGCCTAGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14277</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>48131</contig_pos>
        <strand>+</strand>
        <context>GCTGCTGGCC[C/T]AGAATCCCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACGGTAGTTTTATGCCATGGTCTTGAGGCTGTGAAAGTTGCTGCTGGCC</left_flank>
        <right_flank>AGAATCCCAAACTAGGCCACCGCCTTTTAGCTGATCTAGCTTTAGCTAGC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCTGAAATTCTGAAAACCTGGATTCTGGATCTCTAGATCCTTGGATTCTAGAACCTTGAGTTTCAGGATTTCCAGCATTCTAGAACCTGGGGATCCTGGATTTTTAGGATCCTGAATTTTGGAATTTGAAGATTCTGGATTCCTAGGAAACTCTGCGGAATTTCACAACTTTTGCGATTTTCGGATTTTAGGAAAATTTGAAAATCTGAAAGTCTGGGACCCACTTTCCCTAGATGAACCTCCTTTCCTCTGTGCCTTTTTGCACTCTCCGTCGTTCTTTTTTTTTGGCCCCGCCCCCTTTTTCCTTCTTCTTCTTCTCGGAAATTTTCTGGGGTCTCATTTGCAAAGGAAGGAGCCAAGAAGGCACACATTTTTCCCTCTAACCTAAATTTTTCTCTAAATCTCTCACTTTCTTCTTTCTCTCCGCTGGAGGAGCGAGACGACGACTACGGTAGTTTTATGCCATGGTCTTGAGGCTGTGAAAGTTGCTGCTGGCCCAGAATCCCAAACTAGGCCACCGCCTTTTAGCTGATCTAGCTTTAGCTAGCTAAATTTTGCTCAGGCGAAAACCTAGGCCACAAGCCGATGGCCTAGAATTCCCACGGCCAGGTCGCAATGATACAGTGGCCTAGAATCCGGGAGCTAGAAAAACTAGGTCATCCCGGTCATGCATTTTTCTACCGTACCCCACAAAAAGGGCGGAGCCTATTTTGACACACACACACACACATACAAACACAGAACAACCCATAATTTTGGCTCCTCGCTTTTTCTGCTTCTGCTCAATTTCCTTTGGAAAGTTTAGGCTCCGCCCCTTCTTTCGGTCCTACTGTAGGCTTCATTTTCTCTGCGCTCTCTCATCTCCCCACACTCTCTCACCCTCTCTCTCTCTCTCTCTCTGCCTTTATCATTTTCTAATTAAGTATCAATAAATCAAATTTATATATTCCTCTTCTTCTTCTAGAAAACTTTTTTTTGGGCAGAAGAGACAGTGAGAG</canonical>
            <polymorphic>TCTCTGAAATTCTGAAAACCTGGATTCTGGATCTCTAGATCCTTGGATTCTAGAACCTTGAGTTTCAGGATTTCCAGCATTCTAGAACCTGGGGATCCTGGATTTTTAGGATCCTGAATTTTGGAATTTGAAGATTCTGGATTCCTAGGAAACTCTGCGGAATTTCACAACTTTTGCGATTTTCGGATTTTAGGAAAATTTGAAAATCTGAAAGTCTGGGACCCACTTTCCCTAGATGAACCTCCTTTCCTCTGTGCCTTTTTGCACTCTCCGTCGTTCTTTTTTTTTGGCCCCGCCCCCTTTTTCCTTCTTCTTCTTCTCGGAAATTTTCTGGGGTCTCATTTGCAAAGGAAGGAGCCAAGAAGGCACACATTTTTCCCTCTAACCTAAATTTTTCTCTAAATCTCTCACTTTCTTCTTTCTCTCCGCTGGAGGAGCGAGACGACGACTACGGTAGTTTTATGCCATGGTCTTGAGGCTGTGAAAGTTGCTGCTGGCCYAGAATCCCAAACTAGGCCACCGCCTTTTAGCTGATCTAGCTTTAGCTAGCTAAATTTTGCTCAGGCGAAAACCTAGGCCACAAGCCGATGGCCTAGAATTCCCACGGCCAGGTCGCAATGATACAGTGGCCTAGAATCCGGGAGCTAGAAAAACTAGGTCATCCCGGTCATGCATTTTTCTACCGTACCCCACAAAAAGGGCGGAGCCTATTTTGACACACACACACACACATACAAACACAGAACAACCCATAATTTTGGCTCCTCGCTTTTTCTGCTTCTGCTCAATTTCCTTTGGAAAGTTTAGGCTCCGCCCCTTCTTTCGGTCCTACTGTAGGCTTCATTTTCTCTGCGCTCTCTCATCTCCCCACACTCTCTCACCCTCTCTCTCTCTCTCTCTCTGCCTTTATCATTTTCTAATTAAGTATCAATAAATCAAATTTATATATTCCTCTTCTTCTTCTAGAAAACTTTTTTTTGGGCAGAAGAGACAGTGAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>329 219 207 175 70</canonical_bands>
                <polymorphic_bands>536 219 175 70</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTTTCTCTAAATCTCTCACTTTC</pcr_primer_p1>
		<pcr_primer_p2>GATTCTAGGCCACTGTATCATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTTTTCTCTAAATCTCTCACTTTCTTCTTTCTCTCCGCTGGAGGAGCGAGACGACGACTACGGTAGTTTTATGCCATGGTCTTGAGGCTGTGAAAGTTGCTGCTGGCCCAGAATCCCAAACTAGGCCACCGCCTTTTAGCTGATCTAGCTTTAGCTAGCTAAATTTTGCTCAGGCGAAAACCTAGGCCACAAGCCGATGGCCTAGAATTCCCACGGCCAGGTCGCAATGATACAGTGGCCTAGAATC</canonical_amplicon>
		<polymorphic_amplicon>AATTTTTCTCTAAATCTCTCACTTTCTTCTTTCTCTCCGCTGGAGGAGCGAGACGACGACTACGGTAGTTTTATGCCATGGTCTTGAGGCTGTGAAAGTTGCTGCTGGCCYAGAATCCCAAACTAGGCCACCGCCTTTTAGCTGATCTAGCTTTAGCTAGCTAAATTTTGCTCAGGCGAAAACCTAGGCCACAAGCCGATGGCCTAGAATTCCCACGGCCAGGTCGCAATGATACAGTGGCCTAGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14278</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>55256</contig_pos>
        <strand>+</strand>
        <context>GCCAACGGCT[C/T]TAATTCAACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCCATTCGTTTGCTCGGAGTGCACATTTAACACGATCACGCCAACGGCT</left_flank>
        <right_flank>TAATTCAACACTTGAAAGTGCACAACGACGGAAATGACGAGGACATGCGG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGCCAAATTTAGGATATTTTAGGCCTATTTAAAGCCATCCTGGGCTTACCTGAATGGATTTTTGATGACTTCAGAGAGGGCCTAGTAACGGCCTAGAATTTTTAGCCATGTCAGGCTATTTTAGGCCAAGCTTAAGACATTCTGGCCCGATCTAGACCGATGTTCGGTCCAATTTTGGCTGTACCTGATCAGTTTTTGGCGGTTTAGTCTAATTTTTAGGCCAAATGACTTCTAAGGCCTTTTTTAGATTAATTTTAGTACACTCTGAAATTGTAGAATAGATGAAACTATGCTCCATAGTTGCTAAAAGGGGCGGAGTCAAACATGAAAAATAACCCCGAATTCTCATTTTCAGCACCAATCAAATGCCCCGACTGTCCATTCGAATCGCCGGACGCGAAGATTCTCGAAAACCACCGATTCTTCCACTCGCCGAACGGACCGACACGCCCATTCGTTTGCTCGGAGTGCACATTTAACACGATCACGCCAACGGCTCTAATTCAACACTTGAAAGTGCACAACGACGGAAATGACGAGGACATGCGGCACGCGAAGAATCCACGTCTTCAGAAGCATCAACGGAAGGGAGACACTATTCCGCACGGTGTGAAAGGGTACAGCTGTACGAGTTGCTCGTTCAAGACGACCACGGAGCACAAGCTGAAAGAGCACACGGCGATTCATCGCGTTCATTTGATCAATCGAATTCGCGTCTCGATGAAGCGACAACCGCCGAAAGCCGAGTATCAACGGCCGAAAATGAAGCATTTGATGGTGGCGAAGAATGCGAAGCACTGCAAAAAGTGCACGTTCAAGTGTGTCACTCAGAGCGTCTTCATCGAGCATTTGGATCGTCACGGATGGAATCAACTGTACAAATGCAAGATTTGCGACTATTCGGACGCGTGCAAGTCGGTCGTCGACTTCCACCAAATGCACCATCACTCGGTCAAGGATCAAACGCTTCGCGGCATTATTCAAGCGACGAAGATTCGC</canonical>
            <polymorphic>GGGCCAAATTTAGGATATTTTAGGCCTATTTAAAGCCATCCTGGGCTTACCTGAATGGATTTTTGATGACTTCAGAGAGGGCCTAGTAACGGCCTAGAATTTTTAGCCATGTCAGGCTATTTTAGGCCAAGCTTAAGACATTCTGGCCCGATCTAGACCGATGTTCGGTCCAATTTTGGCTGTACCTGATCAGTTTTTGGCGGTTTAGTCTAATTTTTAGGCCAAATGACTTCTAAGGCCTTTTTTAGATTAATTTTAGTACACTCTGAAATTGTAGAATAGATGAAACTATGCTCCATAGTTGCTAAAAGGGGCGGAGTCAAACATGAAAAATAACCCCGAATTCTCATTTTCAGCACCAATCAAATGCCCCGACTGTCCATTCGAATCGCCGGACGCGAAGATTCTCGAAAACCACCGATTCTTCCACTCGCCGAACGGACCGACACGCCCATTCGTTTGCTCGGAGTGCACATTTAACACGATCACGCCAACGGCTYTAATTCAACACTTGAAAGTGCACAACGACGGAAATGACGAGGACATGCGGCACGCGAAGAATCCACGTCTTCAGAAGCATCAACGGAAGGGAGACACTATTCCGCACGGTGTGAAAGGGTACAGCTGTACGAGTTGCTCGTTCAAGACGACCACGGAGCACAAGCTGAAAGAGCACACGGCGATTCATCGCGTTCATTTGATCAATCGAATTCGCGTCTCGATGAAGCGACAACCGCCGAAAGCCGAGTATCAACGGCCGAAAATGAAGCATTTGATGGTGGCGAAGAATGCGAAGCACTGCAAAAAGTGCACGTTCAAGTGTGTCACTCAGAGCGTCTTCATCGAGCATTTGGATCGTCACGGATGGAATCAACTGTACAAATGCAAGATTTGCGACTATTCGGACGCGTGCAAGTCGGTCGTCGACTTCCACCAAATGCACCATCACTCGGTCAAGGATCAAACGCTTCGCGGCATTATTCAAGCGACGAAGATTCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATAACCCCGAATTCTC</pcr_primer_p1>
		<pcr_primer_p2>CTTCTGAAGACGTGGATTCTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAATAACCCCGAATTCTCATTTTCAGCACCAATCAAATGCCCCGACTGTCCATTCGAATCGCCGGACGCGAAGATTCTCGAAAACCACCGATTCTTCCACTCGCCGAACGGACCGACACGCCCATTCGTTTGCTCGGAGTGCACATTTAACACGATCACGCCAACGGCTCTAATTCAACACTTGAAAGTGCACAACGACGGAAATGACGAGGACATGCGGCACGCGAAGAATCCACGTCTTCAGAAG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATAACCCCGAATTCTCATTTTCAGCACCAATCAAATGCCCCGACTGTCCATTCGAATCGCCGGACGCGAAGATTCTCGAAAACCACCGATTCTTCCACTCGCCGAACGGACCGACACGCCCATTCGTTTGCTCGGAGTGCACATTTAACACGATCACGCCAACGGCTYTAATTCAACACTTGAAAGTGCACAACGACGGAAATGACGAGGACATGCGGCACGCGAAGAATCCACGTCTTCAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14279</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>55354</contig_pos>
        <strand>+</strand>
        <context>AGGGAGACAC[G/T]ATTCCGCACG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGGCACGCGAAGAATCCACGTCTTCAGAAGCATCAACGGAAGGGAGACAC</left_flank>
        <right_flank>ATTCCGCACGGTGTGAAAGGGTACAGCTGTACGAGTTGCTCGTTCAAGAC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTAGCCATGTCAGGCTATTTTAGGCCAAGCTTAAGACATTCTGGCCCGATCTAGACCGATGTTCGGTCCAATTTTGGCTGTACCTGATCAGTTTTTGGCGGTTTAGTCTAATTTTTAGGCCAAATGACTTCTAAGGCCTTTTTTAGATTAATTTTAGTACACTCTGAAATTGTAGAATAGATGAAACTATGCTCCATAGTTGCTAAAAGGGGCGGAGTCAAACATGAAAAATAACCCCGAATTCTCATTTTCAGCACCAATCAAATGCCCCGACTGTCCATTCGAATCGCCGGACGCGAAGATTCTCGAAAACCACCGATTCTTCCACTCGCCGAACGGACCGACACGCCCATTCGTTTGCTCGGAGTGCACATTTAACACGATCACGCCAACGGCTCTAATTCAACACTTGAAAGTGCACAACGACGGAAATGACGAGGACATGCGGCACGCGAAGAATCCACGTCTTCAGAAGCATCAACGGAAGGGAGACACTATTCCGCACGGTGTGAAAGGGTACAGCTGTACGAGTTGCTCGTTCAAGACGACCACGGAGCACAAGCTGAAAGAGCACACGGCGATTCATCGCGTTCATTTGATCAATCGAATTCGCGTCTCGATGAAGCGACAACCGCCGAAAGCCGAGTATCAACGGCCGAAAATGAAGCATTTGATGGTGGCGAAGAATGCGAAGCACTGCAAAAAGTGCACGTTCAAGTGTGTCACTCAGAGCGTCTTCATCGAGCATTTGGATCGTCACGGATGGAATCAACTGTACAAATGCAAGATTTGCGACTATTCGGACGCGTGCAAGTCGGTCGTCGACTTCCACCAAATGCACCATCACTCGGTCAAGGATCAAACGCTTCGCGGCATTATTCAAGCGACGAAGATTCGCATCGAGCACGGACACATTCAGAATCCGGAGGTAGGACACACAGACAATAAACGTCTGAAGGCTTGAAAAGGTGAACTTTTTGGCGCCTGTGGAAATTG</canonical>
            <polymorphic>ATTTTTAGCCATGTCAGGCTATTTTAGGCCAAGCTTAAGACATTCTGGCCCGATCTAGACCGATGTTCGGTCCAATTTTGGCTGTACCTGATCAGTTTTTGGCGGTTTAGTCTAATTTTTAGGCCAAATGACTTCTAAGGCCTTTTTTAGATTAATTTTAGTACACTCTGAAATTGTAGAATAGATGAAACTATGCTCCATAGTTGCTAAAAGGGGCGGAGTCAAACATGAAAAATAACCCCGAATTCTCATTTTCAGCACCAATCAAATGCCCCGACTGTCCATTCGAATCGCCGGACGCGAAGATTCTCGAAAACCACCGATTCTTCCACTCGCCGAACGGACCGACACGCCCATTCGTTTGCTCGGAGTGCACATTTAACACGATCACGCCAACGGCTCTAATTCAACACTTGAAAGTGCACAACGACGGAAATGACGAGGACATGCGGCACGCGAAGAATCCACGTCTTCAGAAGCATCAACGGAAGGGAGACACKATTCCGCACGGTGTGAAAGGGTACAGCTGTACGAGTTGCTCGTTCAAGACGACCACGGAGCACAAGCTGAAAGAGCACACGGCGATTCATCGCGTTCATTTGATCAATCGAATTCGCGTCTCGATGAAGCGACAACCGCCGAAAGCCGAGTATCAACGGCCGAAAATGAAGCATTTGATGGTGGCGAAGAATGCGAAGCACTGCAAAAAGTGCACGTTCAAGTGTGTCACTCAGAGCGTCTTCATCGAGCATTTGGATCGTCACGGATGGAATCAACTGTACAAATGCAAGATTTGCGACTATTCGGACGCGTGCAAGTCGGTCGTCGACTTCCACCAAATGCACCATCACTCGGTCAAGGATCAAACGCTTCGCGGCATTATTCAAGCGACGAAGATTCGCATCGAGCACGGACACATTCAGAATCCGGAGGTAGGACACACAGACAATAAACGTCTGAAGGCTTGAAAAGGTGAACTTTTTGGCGCCTGTGGAAATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTGAAAGTGCACAACGAC</pcr_primer_p1>
		<pcr_primer_p2>CCATCAAATGCTTCATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>270</pcr_amplicon_size>
		<canonical_amplicon>ACTTGAAAGTGCACAACGACGGAAATGACGAGGACATGCGGCACGCGAAGAATCCACGTCTTCAGAAGCATCAACGGAAGGGAGACACTATTCCGCACGGTGTGAAAGGGTACAGCTGTACGAGTTGCTCGTTCAAGACGACCACGGAGCACAAGCTGAAAGAGCACACGGCGATTCATCGCGTTCATTTGATCAATCGAATTCGCGTCTCGATGAAGCGACAACCGCCGAAAGCCGAGTATCAACGGCCGAAAATGAAGCATTTGATGG</canonical_amplicon>
		<polymorphic_amplicon>ACTTGAAAGTGCACAACGACGGAAATGACGAGGACATGCGGCACGCGAAGAATCCACGTCTTCAGAAGCATCAACGGAAGGGAGACACKATTCCGCACGGTGTGAAAGGGTACAGCTGTACGAGTTGCTCGTTCAAGACGACCACGGAGCACAAGCTGAAAGAGCACACGGCGATTCATCGCGTTCATTTGATCAATCGAATTCGCGTCTCGATGAAGCGACAACCGCCGAAAGCCGAGTATCAACGGCCGAAAATGAAGCATTTGATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14280</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>59635</contig_pos>
        <strand>+</strand>
        <context>ATCCGTAAGT[G/T]AAAGGCAACG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATGTTTGATTAAGACTTTGTACAGTAATTAATTACAGTAATCCGTAAGT</left_flank>
        <right_flank>AAAGGCAACGTTTTCTTAACTTTGCTAAGATCACAACTCATTAAATTTGG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAGAGAATCACCTAGAAACTGAAATTCAAGAAGAAAATGCGCTCTTTTGAGAATTTCAAAACCCTCAATAGAGCGCATTTTCACTTTAAAAAAAAGAGAAAAAGAAGAAAGAAAGAAAACATGATTATCACAGAGAAAGTGCGGTGTTGGGAGAGGGAAGAGAGAAAAAAAGAAAAAAAGAAAAAAAATCGATAATCGATTTTCTCAAATGTACTGTGGTTGTTCTTGACCCGTTAACAATCGGAACATTGACGTCGGCATCGTCTTCATATGAATTTCTCCAACCGCCGTGGCGAGCATATTCACAATTCTGAAAAATTATCGATTTTTCAGAATTATCGATTTTTTAGCCTCACCTATCATGTGCCACCGCTACCACCGACGTGCCGTTGATTTCGATGATTCGGTGTCCGACGCGAATTCCTCCGCGTTCAGCGATACCGCCTAAAATGTTTGATTAAGACTTTGTACAGTAATTAATTACAGTAATCCGTAAGTTAAAGGCAACGTTTTCTTAACTTTGCTAAGATCACAACTCATTAAATTTGGATCTGAGTTGTTTGAAACATATATTTTTGAATTTGCCTTGCCAGGCGCTTCAAGATGAGTATAAACACGACTAGTTTTAGAAGATTTTGAGGATTACTGTAGTTTTCGTGGTGGGACCCAATTTTGTAATTTCAGGCGTGTTTATACTCATTTTGAAGTTCACAATGAACAAAATTGAACAAAAAAAGTTTTACTCAAATTGAGTCAAAACCAAGCGAGTTATGATCTATTTCATTTTGAAATTTGTGAAAAATTCAAATTTTCAAAATATCTCAGTAATTTTTGGCACAGTTTGAAGAAAATTAATTTTTTCAGATTTCGCTTGTTACGAGCTTCAAAATGAGTATTTTTCAAATAGCTACTTTCCAAAAAGTTTGAGGATTATTGTAGTTTTCGCGGTGGGACCCAATTTTATAAGTCTAGGTGTGTTTATACTTATTTTGAAGCTCT</canonical>
            <polymorphic>GCAGAGAATCACCTAGAAACTGAAATTCAAGAAGAAAATGCGCTCTTTTGAGAATTTCAAAACCCTCAATAGAGCGCATTTTCACTTTAAAAAAAAGAGAAAAAGAAGAAAGAAAGAAAACATGATTATCACAGAGAAAGTGCGGTGTTGGGAGAGGGAAGAGAGAAAAAAAGAAAAAAAGAAAAAAAATCGATAATCGATTTTCTCAAATGTACTGTGGTTGTTCTTGACCCGTTAACAATCGGAACATTGACGTCGGCATCGTCTTCATATGAATTTCTCCAACCGCCGTGGCGAGCATATTCACAATTCTGAAAAATTATCGATTTTTCAGAATTATCGATTTTTTAGCCTCACCTATCATGTGCCACCGCTACCACCGACGTGCCGTTGATTTCGATGATTCGGTGTCCGACGCGAATTCCTCCGCGTTCAGCGATACCGCCTAAAATGTTTGATTAAGACTTTGTACAGTAATTAATTACAGTAATCCGTAAGTKAAAGGCAACGTTTTCTTAACTTTGCTAAGATCACAACTCATTAAATTTGGATCTGAGTTGTTTGAAACATATATTTTTGAATTTGCCTTGCCAGGCGCTTCAAGATGAGTATAAACACGACTAGTTTTAGAAGATTTTGAGGATTACTGTAGTTTTCGTGGTGGGACCCAATTTTGTAATTTCAGGCGTGTTTATACTCATTTTGAAGTTCACAATGAACAAAATTGAACAAAAAAAGTTTTACTCAAATTGAGTCAAAACCAAGCGAGTTATGATCTATTTCATTTTGAAATTTGTGAAAAATTCAAATTTTCAAAATATCTCAGTAATTTTTGGCACAGTTTGAAGAAAATTAATTTTTTCAGATTTCGCTTGTTACGAGCTTCAAAATGAGTATTTTTCAAATAGCTACTTTCCAAAAAGTTTGAGGATTATTGTAGTTTTCGCGGTGGGACCCAATTTTATAAGTCTAGGTGTGTTTATACTTATTTTGAAGCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>312 224 148 147 87 25 21 19 17</canonical_bands>
                <polymorphic_bands>312 224 148 147 87 38 25 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGCCTAAAATGTTTGATTAAG</pcr_primer_p1>
		<pcr_primer_p2>CATTTGCTCTTTATTGAGAGGT</pcr_primer_p2>
		<pcr_amplicon_size>621</pcr_amplicon_size>
		<canonical_amplicon>CGCCTAAAATGTTTGATTAAGACTTTGTACAGTAATTAATTACAGTAATCCGTAAGTTAAAGGCAACGTTTTCTTAACT</canonical_amplicon>
		<polymorphic_amplicon>CGCCTAAAATGTTTGATTAAGACTTTGTACAGTAATTAATTACAGTAATCCGTAAGTKAAAGGCAACGTTTTCTTAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14281</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>59617</contig_pos>
        <strand>+</strand>
        <context>CAGTAATTAA[C/T]TACAGTAATC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAGCGATACCGCCTAAAATGTTTGATTAAGACTTTGTACAGTAATTAA</left_flank>
        <right_flank>TACAGTAATCCGTAAGTTAAAGGCAACGTTTTCTTAACTTTGCTAAGATC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATGGCAATGTGGACTCGCAGAGAATCACCTAGAAACTGAAATTCAAGAAGAAAATGCGCTCTTTTGAGAATTTCAAAACCCTCAATAGAGCGCATTTTCACTTTAAAAAAAAGAGAAAAAGAAGAAAGAAAGAAAACATGATTATCACAGAGAAAGTGCGGTGTTGGGAGAGGGAAGAGAGAAAAAAAGAAAAAAAGAAAAAAAATCGATAATCGATTTTCTCAAATGTACTGTGGTTGTTCTTGACCCGTTAACAATCGGAACATTGACGTCGGCATCGTCTTCATATGAATTTCTCCAACCGCCGTGGCGAGCATATTCACAATTCTGAAAAATTATCGATTTTTCAGAATTATCGATTTTTTAGCCTCACCTATCATGTGCCACCGCTACCACCGACGTGCCGTTGATTTCGATGATTCGGTGTCCGACGCGAATTCCTCCGCGTTCAGCGATACCGCCTAAAATGTTTGATTAAGACTTTGTACAGTAATTAATTACAGTAATCCGTAAGTTAAAGGCAACGTTTTCTTAACTTTGCTAAGATCACAACTCATTAAATTTGGATCTGAGTTGTTTGAAACATATATTTTTGAATTTGCCTTGCCAGGCGCTTCAAGATGAGTATAAACACGACTAGTTTTAGAAGATTTTGAGGATTACTGTAGTTTTCGTGGTGGGACCCAATTTTGTAATTTCAGGCGTGTTTATACTCATTTTGAAGTTCACAATGAACAAAATTGAACAAAAAAAGTTTTACTCAAATTGAGTCAAAACCAAGCGAGTTATGATCTATTTCATTTTGAAATTTGTGAAAAATTCAAATTTTCAAAATATCTCAGTAATTTTTGGCACAGTTTGAAGAAAATTAATTTTTTCAGATTTCGCTTGTTACGAGCTTCAAAATGAGTATTTTTCAAATAGCTACTTTCCAAAAAGTTTGAGGATTATTGTAGTTTTCGCGGTGGGACCCAATTTTATAAGTCTAGGTGTGTTTA</canonical>
            <polymorphic>ACATGGCAATGTGGACTCGCAGAGAATCACCTAGAAACTGAAATTCAAGAAGAAAATGCGCTCTTTTGAGAATTTCAAAACCCTCAATAGAGCGCATTTTCACTTTAAAAAAAAGAGAAAAAGAAGAAAGAAAGAAAACATGATTATCACAGAGAAAGTGCGGTGTTGGGAGAGGGAAGAGAGAAAAAAAGAAAAAAAGAAAAAAAATCGATAATCGATTTTCTCAAATGTACTGTGGTTGTTCTTGACCCGTTAACAATCGGAACATTGACGTCGGCATCGTCTTCATATGAATTTCTCCAACCGCCGTGGCGAGCATATTCACAATTCTGAAAAATTATCGATTTTTCAGAATTATCGATTTTTTAGCCTCACCTATCATGTGCCACCGCTACCACCGACGTGCCGTTGATTTCGATGATTCGGTGTCCGACGCGAATTCCTCCGCGTTCAGCGATACCGCCTAAAATGTTTGATTAAGACTTTGTACAGTAATTAAYTACAGTAATCCGTAAGTTAAAGGCAACGTTTTCTTAACTTTGCTAAGATCACAACTCATTAAATTTGGATCTGAGTTGTTTGAAACATATATTTTTGAATTTGCCTTGCCAGGCGCTTCAAGATGAGTATAAACACGACTAGTTTTAGAAGATTTTGAGGATTACTGTAGTTTTCGTGGTGGGACCCAATTTTGTAATTTCAGGCGTGTTTATACTCATTTTGAAGTTCACAATGAACAAAATTGAACAAAAAAAGTTTTACTCAAATTGAGTCAAAACCAAGCGAGTTATGATCTATTTCATTTTGAAATTTGTGAAAAATTCAAATTTTCAAAATATCTCAGTAATTTTTGGCACAGTTTGAAGAAAATTAATTTTTTCAGATTTCGCTTGTTACGAGCTTCAAAATGAGTATTTTTCAAATAGCTACTTTCCAAAAAGTTTGAGGATTATTGTAGTTTTCGCGGTGGGACCCAATTTTATAAGTCTAGGTGTGTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>496 375 129</canonical_bands>
                <polymorphic_bands>871 129</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>222 103 90 85 64 56 45 43 41 36 33 29 25 25 23 20 17 11 10 8 6 4 4</canonical_bands>
                <polymorphic_bands>222 103 90 85 68 56 45 43 41 36 33 29 25 25 23 20 17 11 10 8 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTAGCCTCACCTATCATGT</pcr_primer_p1>
		<pcr_primer_p2>GGTGTCATTTGCTCTTTATTG</pcr_primer_p2>
		<pcr_amplicon_size>724</pcr_amplicon_size>
		<canonical_amplicon>TTTTTAGCCTCACCTATCATGTGCCACCGCTACCACCGACGTGCCGTTGATTTCGATGATTCGGTGTCCGACGCGAATTCCTCCGCGTTCAGCGATACCGCCTAAAATGTTTGATTAAGACTTTGTACAGTAATTAATTACAGTAATCCGTAAGTTAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTAGCCTCACCTATCATGTGCCACCGCTACCACCGACGTGCCGTTGATTTCGATGATTCGGTGTCCGACGCGAATTCCTCCGCGTTCAGCGATACCGCCTAAAATGTTTGATTAAGACTTTGTACAGTAATTAAYTACAGTAATCCGTAAGTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14282</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>65364</contig_pos>
        <strand>+</strand>
        <context>CACTCTCTTT[C/T]YTCGTTGGTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGAAAAGCGGCAAAACGGCACGCCTTTCTCTATGCTTTCCACTCTCTTT</left_flank>
        <right_flank>CTCGTTGGTGGTGGTGTGGCGCAGTGGTAGCGCGCTTGCGTTTTGAGGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCAACTGACAAAATGTTTATCATAATATCAGCAACATTTTGATCACTTTTTGATATCTCTCACAGGAACCGAGATAACTTGGCTCAAAGTTGACAGTTAAGGGGGTTTGTGTTAACGGTATTGAAAAAAAACTCACTCTCTTTGCTATTCTTCTTCTTATCCATACTTCCTCGCCGATTCTCCGTACCCGGTGCGCCTTTAATTCCGCTTGATGGTCCCCCACCGGCTCCATTCAATAGCCTATCGGTTTCTTGCTCTTCTTGCTCATCACCAGCCCCATTTTCTGCGGCTTCCTGTGCAGCTGTCGCCGCTTCATGCCAATTCATTTCCTGCAGAGAAAACCGTTTTAATGGAAAAATCCGTTTTAAAAGATAAATTGGGGACCGGAAATTAAGAGAATTTCATTACTTTTTTGGAAGGAGAAAATGCTCAAGCGCATCAATCTATCTTGAAAAGCGGCAAAACGGCACGCCTTTCTCTATGCTTTCCACTCTCTTTCCTCGTTGGTGGTGGTGTGGCGCAGTGGTAGCGCGCTTGCGTTTTGAGGTAGAGGCCAAGGGTTCGAACCCATCCGAGCTTTTTTCTTTTTTCTTCTTTTTCAGGACATGGGAATAAGGTTTTAATCAATTTTAGGGAAATAAAGATTATTTAGGTTTATGTGAGTTTGTGAAAATTGGCGGGCCATCTGCTGGGAAACTAAAAAATCCAAAAATGTTGAAAAGTCATTATTTCTATTAAAAAAAAAGATCAATATTTCTCTAGAAAATCTGAAATCTGAAATTGAGAACCTTTAAAAATAAAGATTCCAAATTTTCAAAAAATCCAAAAAAGGAAAAAAGTTCCGGAAATATTTCTCCGGCTTTCCTCAGATTTTTCTCCAGCTATACATCTTTTTCTCAAGGGTGTCATTATTTCCTTTTTCTGCTTTTCTTTATATACTACACTCATTTTTATATCGCATTATCATAAGTTTGGAACTTTTTTAAAAAGAGTTCCAAA</canonical>
            <polymorphic>GTCAACTGACAAAATGTTTATCATAATATCAGCAACATTTTGATCACTTTTTGATATCTCTCACAGGAACCGAGATAACTTGGCTCAAAGTTGACAGTTAAGGGGGTTTGTGTTAACGGTATTGAAAAAAAACTCACTCTCTTTGCTATTCTTCTTCTTATCCATACTTCCTCGCCGATTCTCCGTACCCGGTGCGCCTTTAATTCCGCTTGATGGTCCCCCACCGGCTCCATTCAATAGCCTATCGGTTTCTTGCTCTTCTTGCTCATCACCAGCCCCATTTTCTGCGGCTTCCTGTGCAGCTGTCGCCGCTTCATGCCAATTCATTTCCTGCAGAGAAAACCGTTTTAATGGAAAAATCCGTTTTAAAAGATAAATTGGGGACCGGAAATTAAGAGAATTTCATTACTTTTTTGGAAGGAGAAAATGCTCAAGCGCATCAATCTATCTTGAAAAGCGGCAAAACGGCACGCCTTTCTCTATGCTTTCCACTCTCTTTYCTCGTTGGTGGTGGTGTGGCGCAGTGGTAGCGCGCTTGCGTTTTGAGGTAGAGGCCAAGGGTTCGAACCCATCCGAGCTTTTTTCTTTTTTCTTCTTTTTCAGGACATGGGAATAAGGTTTTAATCAATTTTAGGGAAATAAAGATTATTTAGGTTTATGTGAGTTTGTGAAAATTGGCGGGCCATCTGCTGGGAAACTAAAAAATCCAAAAATGTTGAAAAGTCATTATTTCTATTAAAAAAAAAGATCAATATTTCTCTAGAAAATCTGAAATCTGAAATTGAGAACCTTTAAAAATAAAGATTCCAAATTTTCAAAAAATCCAAAAAAGGAAAAAAGTTCCGGAAATATTTCTCCGGCTTTCCTCAGATTTTTCTCCAGCTATACATCTTTTTCTCAAGGGTGTCATTATTTCCTTTTTCTGCTTTTCTTTATATACTACACTCATTTTTATATCGCATTATCATAAGTTTGGAACTTTTTTAAAAAGAGTTCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCCGTTTTAAAAGATAAATTG</pcr_primer_p1>
		<pcr_primer_p2>ATGTCCTGAAAAAGAAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAATCCGTTTTAAAAGATAAATTGGGGACCGGAAATTAAGAGAATTTCATTACTTTTTTGGAAGGAGAAAATGCTCAAGCGCATCAATCTATCTTGAAAAGCGGCAAAACGGCACGCCTTTCTCTATGCTTTCCACTCTCTTTCCTCGTTGGTGGTGGTGTGGCGCAGTGGTAGCGCGCTTGCGTTTTGAGGTAGAGGCCAAGGGTTCGAACCCATCCGAGCTTTTTTCTTTTTTCTTCTTTTTCAGGACAT</canonical_amplicon>
		<polymorphic_amplicon>AAATCCGTTTTAAAAGATAAATTGGGGACCGGAAATTAAGAGAATTTCATTACTTTTTTGGAAGGAGAAAATGCTCAAGCGCATCAATCTATCTTGAAAAGCGGCAAAACGGCACGCCTTTCTCTATGCTTTCCACTCTCTTTYCTCGTTGGTGGTGGTGTGGCGCAGTGGTAGCGCGCTTGCGTTTTGAGGTAGAGGCCAAGGGTTCGAACCCATCCGAGCTTTTTTCTTTTTTCTTCTTTTTCAGGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14283</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>65365</contig_pos>
        <strand>+</strand>
        <context>ACTCTCTTTY[C/T]TCGTTGGTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAAAGCGGCAAAACGGCACGCCTTTCTCTATGCTTTCCACTCTCTTTC</left_flank>
        <right_flank>TCGTTGGTGGTGGTGTGGCGCAGTGGTAGCGCGCTTGCGTTTTGAGGTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAACTGACAAAATGTTTATCATAATATCAGCAACATTTTGATCACTTTTTGATATCTCTCACAGGAACCGAGATAACTTGGCTCAAAGTTGACAGTTAAGGGGGTTTGTGTTAACGGTATTGAAAAAAAACTCACTCTCTTTGCTATTCTTCTTCTTATCCATACTTCCTCGCCGATTCTCCGTACCCGGTGCGCCTTTAATTCCGCTTGATGGTCCCCCACCGGCTCCATTCAATAGCCTATCGGTTTCTTGCTCTTCTTGCTCATCACCAGCCCCATTTTCTGCGGCTTCCTGTGCAGCTGTCGCCGCTTCATGCCAATTCATTTCCTGCAGAGAAAACCGTTTTAATGGAAAAATCCGTTTTAAAAGATAAATTGGGGACCGGAAATTAAGAGAATTTCATTACTTTTTTGGAAGGAGAAAATGCTCAAGCGCATCAATCTATCTTGAAAAGCGGCAAAACGGCACGCCTTTCTCTATGCTTTCCACTCTCTTTCCTCGTTGGTGGTGGTGTGGCGCAGTGGTAGCGCGCTTGCGTTTTGAGGTAGAGGCCAAGGGTTCGAACCCATCCGAGCTTTTTTCTTTTTTCTTCTTTTTCAGGACATGGGAATAAGGTTTTAATCAATTTTAGGGAAATAAAGATTATTTAGGTTTATGTGAGTTTGTGAAAATTGGCGGGCCATCTGCTGGGAAACTAAAAAATCCAAAAATGTTGAAAAGTCATTATTTCTATTAAAAAAAAAGATCAATATTTCTCTAGAAAATCTGAAATCTGAAATTGAGAACCTTTAAAAATAAAGATTCCAAATTTTCAAAAAATCCAAAAAAGGAAAAAAGTTCCGGAAATATTTCTCCGGCTTTCCTCAGATTTTTCTCCAGCTATACATCTTTTTCTCAAGGGTGTCATTATTTCCTTTTTCTGCTTTTCTTTATATACTACACTCATTTTTATATCGCATTATCATAAGTTTGGAACTTTTTTAAAAAGAGTTCCAAAC</canonical>
            <polymorphic>TCAACTGACAAAATGTTTATCATAATATCAGCAACATTTTGATCACTTTTTGATATCTCTCACAGGAACCGAGATAACTTGGCTCAAAGTTGACAGTTAAGGGGGTTTGTGTTAACGGTATTGAAAAAAAACTCACTCTCTTTGCTATTCTTCTTCTTATCCATACTTCCTCGCCGATTCTCCGTACCCGGTGCGCCTTTAATTCCGCTTGATGGTCCCCCACCGGCTCCATTCAATAGCCTATCGGTTTCTTGCTCTTCTTGCTCATCACCAGCCCCATTTTCTGCGGCTTCCTGTGCAGCTGTCGCCGCTTCATGCCAATTCATTTCCTGCAGAGAAAACCGTTTTAATGGAAAAATCCGTTTTAAAAGATAAATTGGGGACCGGAAATTAAGAGAATTTCATTACTTTTTTGGAAGGAGAAAATGCTCAAGCGCATCAATCTATCTTGAAAAGCGGCAAAACGGCACGCCTTTCTCTATGCTTTCCACTCTCTTTCYTCGTTGGTGGTGGTGTGGCGCAGTGGTAGCGCGCTTGCGTTTTGAGGTAGAGGCCAAGGGTTCGAACCCATCCGAGCTTTTTTCTTTTTTCTTCTTTTTCAGGACATGGGAATAAGGTTTTAATCAATTTTAGGGAAATAAAGATTATTTAGGTTTATGTGAGTTTGTGAAAATTGGCGGGCCATCTGCTGGGAAACTAAAAAATCCAAAAATGTTGAAAAGTCATTATTTCTATTAAAAAAAAAGATCAATATTTCTCTAGAAAATCTGAAATCTGAAATTGAGAACCTTTAAAAATAAAGATTCCAAATTTTCAAAAAATCCAAAAAAGGAAAAAAGTTCCGGAAATATTTCTCCGGCTTTCCTCAGATTTTTCTCCAGCTATACATCTTTTTCTCAAGGGTGTCATTATTTCCTTTTTCTGCTTTTCTTTATATACTACACTCATTTTTATATCGCATTATCATAAGTTTGGAACTTTTTTAAAAAGAGTTCCAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCCGTTTTAAAAGATAAATTG</pcr_primer_p1>
		<pcr_primer_p2>ATGTCCTGAAAAAGAAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAATCCGTTTTAAAAGATAAATTGGGGACCGGAAATTAAGAGAATTTCATTACTTTTTTGGAAGGAGAAAATGCTCAAGCGCATCAATCTATCTTGAAAAGCGGCAAAACGGCACGCCTTTCTCTATGCTTTCCACTCTCTTTCCTCGTTGGTGGTGGTGTGGCGCAGTGGTAGCGCGCTTGCGTTTTGAGGTAGAGGCCAAGGGTTCGAACCCATCCGAGCTTTTTTCTTTTTTCTTCTTTTTCAGGACAT</canonical_amplicon>
		<polymorphic_amplicon>AAATCCGTTTTAAAAGATAAATTGGGGACCGGAAATTAAGAGAATTTCATTACTTTTTTGGAAGGAGAAAATGCTCAAGCGCATCAATCTATCTTGAAAAGCGGCAAAACGGCACGCCTTTCTCTATGCTTTCCACTCTCTTTCYTCGTTGGTGGTGGTGTGGCGCAGTGGTAGCGCGCTTGCGTTTTGAGGTAGAGGCCAAGGGTTCGAACCCATCCGAGCTTTTTTCTTTTTTCTTCTTTTTCAGGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14284</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>67888</contig_pos>
        <strand></strand>
        <context>TTCCCGAAAA[A/C]CCCATAAGCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGATAGGGGTAGTGTAGAAGGGGTTAAGAAACCGAAAATTTTCCCGAAAA</left_flank>
        <right_flank>CCCATAAGCGATTTGTTAGACCTTAAACATTTTTTAATGTCCATAACTCA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCGAATTGGGCCGCAGGTACCGTATTCTGAGCGGGTCCGACGGGTCCAACCGTCGGAGAATCTTCGGGAAGATTGAAAGATGAGCGTAGTTGGTTTAGAGACTCCTTTGGAGCTGGCTTCTCAACCACAGCAGGTGCGGTATACGGTAGACCGCTCTGGAAAAGTGTTGATCAGGCGGGAATTCAATTTTTGTTTCGAAAATCGCACAACAACAGCAATAGAATAGGAAAACTCGCTTCATAGATAATAAGTTAAAAGGTGCACAACGGGTTAGTACATGCGGGAACTTGTGCTCCATTGATAAACATTCGCGATGGAGCACAATTGAGACAATCACAACGAGATGTGGTACCTTCTCGGAGAACGGTGAAAAATCGTCGGCGGTTAGTTGAGTGATGGGTTTCGATGCTCCGATGAGCTCCGCCAAACTGTCGTCGTCGATCTGCATAGATAGGGGTAGTGTAGAAGGGGTTAAGAAACCGAAAATTTTCCCGAAAAACCCATAAGCGATTTGTTAGACCTTAAACATTTTTTAATGTCCATAACTCAAACCATTTTGATCGTTTTCGCTTGAAACTGATATTTTTAAATTTGTCTTGTCAAGCGCTTCAAAATGAGTATAAACAAAGCTAGCTTTGAAAGAGTTAGCGGGTTACTGTAGTTTTCGCGGTGGGACCCATTTTTCTAAACATAGGCGTGTTTATACTCATTTTGAAGCTCACAATCAGCCAAATCAAACAAAATAAGTTTCACTCAAATTGAGTCAAAACCAAGCGAGTTATGGTCATTTGAATTTTGAAAATCAGCGAACATTCAAATTTGTTCAATATCTCCGTTGGTTTTGGCTCAATTCGAATGAATTTAAATTTTTTGAATTGGCTTGTTCATACGCTTCAAAATGAGTATAAACACGGCTAGTTTCGGAAGAGTTTCAGGGCTACTGTAGTTTTCGTGGTGGGACCCACTTTTCTAAACAAAGGCTTGTTTATACTCATTTTG</canonical>
            <polymorphic>AGCGAATTGGGCCGCAGGTACCGTATTCTGAGCGGGTCCGACGGGTCCAACCGTCGGAGAATCTTCGGGAAGATTGAAAGATGAGCGTAGTTGGTTTAGAGACTCCTTTGGAGCTGGCTTCTCAACCACAGCAGGTGCGGTATACGGTAGACCGCTCTGGAAAAGTGTTGATCAGGCGGGAATTCAATTTTTGTTTCGAAAATCGCACAACAACAGCAATAGAATAGGAAAACTCGCTTCATAGATAATAAGTTAAAAGGTGCACAACGGGTTAGTACATGCGGGAACTTGTGCTCCATTGATAAACATTCGCGATGGAGCACAATTGAGACAATCACAACGAGATGTGGTACCTTCTCGGAGAACGGTGAAAAATCGTCGGCGGTTAGTTGAGTGATGGGTTTCGATGCTCCGATGAGCTCCGCCAAACTGTCGTCGTCGATCTGCATAGATAGGGGTAGTGTAGAAGGGGTTAAGAAACCGAAAATTTTCCCGAAAAMCCCATAAGCGATTTGTTAGACCTTAAACATTTTTTAATGTCCATAACTCAAACCATTTTGATCGTTTTCGCTTGAAACTGATATTTTTAAATTTGTCTTGTCAAGCGCTTCAAAATGAGTATAAACAAAGCTAGCTTTGAAAGAGTTAGCGGGTTACTGTAGTTTTCGCGGTGGGACCCATTTTTCTAAACATAGGCGTGTTTATACTCATTTTGAAGCTCACAATCAGCCAAATCAAACAAAATAAGTTTCACTCAAATTGAGTCAAAACCAAGCGAGTTATGGTCATTTGAATTTTGAAAATCAGCGAACATTCAAATTTGTTCAATATCTCCGTTGGTTTTGGCTCAATTCGAATGAATTTAAATTTTTTGAATTGGCTTGTTCATACGCTTCAAAATGAGTATAAACACGGCTAGTTTCGGAAGAGTTTCAGGGCTACTGTAGTTTTCGTGGTGGGACCCACTTTTCTAAACAAAGGCTTGTTTATACTCATTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTCGATCTGCATAGATAGG</pcr_primer_p1>
		<pcr_primer_p2>GCTATTAGCACTAACCATCACTT</pcr_primer_p2>
		<pcr_amplicon_size>688</pcr_amplicon_size>
		<canonical_amplicon>CGTCGATCTGCATAGATAGGGGTAGTGTAGAAGGGGTTAAGAAACCGAAAATTTTCCCGAAAAACCCATAAGCGATTTGTTAGACC</canonical_amplicon>
		<polymorphic_amplicon>CGTCGATCTGCATAGATAGGGGTAGTGTAGAAGGGGTTAAGAAACCGAAAATTTTCCCGAAAAMCCCATAAGCGATTTGTTAGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14285</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>68540</contig_pos>
        <strand></strand>
        <context>AATTTTTTTT[T/A]AATTCCCATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAGTGATGGTTAGTGCTAATAGCTAAAAATTGAACTCAAAAATTTTTTTT</left_flank>
        <right_flank>AATTCCCATTTTTTTTTGAAAAAGTAGTGAAAAAATAGGAGAAAATCGGG</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTACTGTAGTTTTCGCGGTGGGACCCATTTTTCTAAACATAGGCGTGTTTATACTCATTTTGAAGCTCACAATCAGCCAAATCAAACAAAATAAGTTTCACTCAAATTGAGTCAAAACCAAGCGAGTTATGGTCATTTGAATTTTGAAAATCAGCGAACATTCAAATTTGTTCAATATCTCCGTTGGTTTTGGCTCAATTCGAATGAATTTAAATTTTTTGAATTGGCTTGTTCATACGCTTCAAAATGAGTATAAACACGGCTAGTTTCGGAAGAGTTTCAGGGCTACTGTAGTTTTCGTGGTGGGACCCACTTTTCTAAACAAAGGCTTGTTTATACTCATTTTGAAGCTATTGACTTGCTGAATTGAAAAATATAAGTATGATGAGTTTCCGACTGAGTTTATCCAAGTTATGGTACTTTTAAACCTTCCTCAATTAGTCCTCTAAAGTGATGGTTAGTGCTAATAGCTAAAAATTGAACTCAAAAATTTTTTTTTAATTCCCATTTTTTTTTGAAAAAGTAGTGAAAAAATAGGAGAAAATCGGGGGAAAAAAAAAGAAGTGAGTGAAAAAGTGTGTGCTTTTTTTTGTGGATTTGGGAATGGAAAGGGACCATCTGAAGAAGAGAGAGAGAGCAGAATTTTTGAAGAGGGACCAGAGAAAATGAGCAATGGGACCGTTATTAGATTATGGGAGAGAAAGGGGACGGGGTTAGGGGAGGAAATAGTGGATTGTTCTTGAAATCTCTAGCTCAGCTTCCAGGAAAAAGAGACGCAGAGAAGCTAGAGTGTCTCGCTTTTTGGCGTATTGAGAGTGGAAAGTGAGCGCTTAAACTTCCAAGCGGCGTATCTCAAAAACTAAAACTTTTAAAAAAAAGTTGTCAACTAAGAAAATGTGTAAAATTTTACGCTCTTTATTTTGTTAGTTGACAAAAATTTGCTCGCAATTACAGTTTTTGAGATACATCCGCTTAAAGTTAAGACACCATCTTTTAACT</canonical>
            <polymorphic>GTTACTGTAGTTTTCGCGGTGGGACCCATTTTTCTAAACATAGGCGTGTTTATACTCATTTTGAAGCTCACAATCAGCCAAATCAAACAAAATAAGTTTCACTCAAATTGAGTCAAAACCAAGCGAGTTATGGTCATTTGAATTTTGAAAATCAGCGAACATTCAAATTTGTTCAATATCTCCGTTGGTTTTGGCTCAATTCGAATGAATTTAAATTTTTTGAATTGGCTTGTTCATACGCTTCAAAATGAGTATAAACACGGCTAGTTTCGGAAGAGTTTCAGGGCTACTGTAGTTTTCGTGGTGGGACCCACTTTTCTAAACAAAGGCTTGTTTATACTCATTTTGAAGCTATTGACTTGCTGAATTGAAAAATATAAGTATGATGAGTTTCCGACTGAGTTTATCCAAGTTATGGTACTTTTAAACCTTCCTCAATTAGTCCTCTAAAGTGATGGTTAGTGCTAATAGCTAAAAATTGAACTCAAAAATTTTTTTTWAATTCCCATTTTTTTTTGAAAAAGTAGTGAAAAAATAGGAGAAAATCGGGGGAAAAAAAAAGAAGTGAGTGAAAAAGTGTGTGCTTTTTTTTGTGGATTTGGGAATGGAAAGGGACCATCTGAAGAAGAGAGAGAGAGCAGAATTTTTGAAGAGGGACCAGAGAAAATGAGCAATGGGACCGTTATTAGATTATGGGAGAGAAAGGGGACGGGGTTAGGGGAGGAAATAGTGGATTGTTCTTGAAATCTCTAGCTCAGCTTCCAGGAAAAAGAGACGCAGAGAAGCTAGAGTGTCTCGCTTTTTGGCGTATTGAGAGTGGAAAGTGAGCGCTTAAACTTCCAAGCGGCGTATCTCAAAAACTAAAACTTTTAAAAAAAAGTTGTCAACTAAGAAAATGTGTAAAATTTTACGCTCTTTATTTTGTTAGTTGACAAAAATTTGCTCGCAATTACAGTTTTTGAGATACATCCGCTTAAAGTTAAGACACCATCTTTTAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>333 213 211 104 75 38 15 6 5</canonical_bands>
                <polymorphic_bands>408 213 211 104 38 15 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATTTGTTAGACCTTAAACATT</pcr_primer_p1>
		<pcr_primer_p2>CACTTTTTCACTCACTTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>723</pcr_amplicon_size>
		<canonical_amplicon>TTAATTCCCATTTTTTTTTGAAAAAGTAGTGAAAAAATAGGAGAAAATCGGGGGAAAAAAAAAGAAGTGAGTGAAAAAGTG</canonical_amplicon>
		<polymorphic_amplicon>TWAATTCCCATTTTTTTTTGAAAAAGTAGTGAAAAAATAGGAGAAAATCGGGGGAAAAAAAAAGAAGTGAGTGAAAAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14286</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>68486</contig_pos>
        <strand></strand>
        <context>caattAGTCC[T/C]CTAAAGTGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GACTGAGTTTATCCAAGTTATGGTACTTTTAAACCTTCCTCAATTAGTCC</left_flank>
        <right_flank>CTAAAGTGATGGTTAGTGCTAATAGCTAAAAATTGAACTCAAAAATTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCAAGCGCTTCAAAATGAGTATAAACAAAGCTAGCTTTGAAAGAGTTAGCGGGTTACTGTAGTTTTCGCGGTGGGACCCATTTTTCTAAACATAGGCGTGTTTATACTCATTTTGAAGCTCACAATCAGCCAAATCAAACAAAATAAGTTTCACTCAAATTGAGTCAAAACCAAGCGAGTTATGGTCATTTGAATTTTGAAAATCAGCGAACATTCAAATTTGTTCAATATCTCCGTTGGTTTTGGCTCAATTCGAATGAATTTAAATTTTTTGAATTGGCTTGTTCATACGCTTCAAAATGAGTATAAACACGGCTAGTTTCGGAAGAGTTTCAGGGCTACTGTAGTTTTCGTGGTGGGACCCACTTTTCTAAACAAAGGCTTGTTTATACTCATTTTGAAGCTATTGACTTGCTGAATTGAAAAATATAAGTATGATGAGTTTCCGACTGAGTTTATCCAAGTTATGGTACTTTTAAACCTTCCTCAATTAGTCCTCTAAAGTGATGGTTAGTGCTAATAGCTAAAAATTGAACTCAAAAATTTTTTTTTAATTCCCATTTTTTTTTGAAAAAGTAGTGAAAAAATAGGAGAAAATCGGGGGAAAAAAAAAGAAGTGAGTGAAAAAGTGTGTGCTTTTTTTTGTGGATTTGGGAATGGAAAGGGACCATCTGAAGAAGAGAGAGAGAGCAGAATTTTTGAAGAGGGACCAGAGAAAATGAGCAATGGGACCGTTATTAGATTATGGGAGAGAAAGGGGACGGGGTTAGGGGAGGAAATAGTGGATTGTTCTTGAAATCTCTAGCTCAGCTTCCAGGAAAAAGAGACGCAGAGAAGCTAGAGTGTCTCGCTTTTTGGCGTATTGAGAGTGGAAAGTGAGCGCTTAAACTTCCAAGCGGCGTATCTCAAAAACTAAAACTTTTAAAAAAAAGTTGTCAACTAAGAAAATGTGTAAAATTTTACGCTCTTTATTTTGTTAGTTGACAAAAATTTGCTCG</canonical>
            <polymorphic>TGTCAAGCGCTTCAAAATGAGTATAAACAAAGCTAGCTTTGAAAGAGTTAGCGGGTTACTGTAGTTTTCGCGGTGGGACCCATTTTTCTAAACATAGGCGTGTTTATACTCATTTTGAAGCTCACAATCAGCCAAATCAAACAAAATAAGTTTCACTCAAATTGAGTCAAAACCAAGCGAGTTATGGTCATTTGAATTTTGAAAATCAGCGAACATTCAAATTTGTTCAATATCTCCGTTGGTTTTGGCTCAATTCGAATGAATTTAAATTTTTTGAATTGGCTTGTTCATACGCTTCAAAATGAGTATAAACACGGCTAGTTTCGGAAGAGTTTCAGGGCTACTGTAGTTTTCGTGGTGGGACCCACTTTTCTAAACAAAGGCTTGTTTATACTCATTTTGAAGCTATTGACTTGCTGAATTGAAAAATATAAGTATGATGAGTTTCCGACTGAGTTTATCCAAGTTATGGTACTTTTAAACCTTCCTCAATTAGTCCYCTAAAGTGATGGTTAGTGCTAATAGCTAAAAATTGAACTCAAAAATTTTTTTTTAATTCCCATTTTTTTTTGAAAAAGTAGTGAAAAAATAGGAGAAAATCGGGGGAAAAAAAAAGAAGTGAGTGAAAAAGTGTGTGCTTTTTTTTGTGGATTTGGGAATGGAAAGGGACCATCTGAAGAAGAGAGAGAGAGCAGAATTTTTGAAGAGGGACCAGAGAAAATGAGCAATGGGACCGTTATTAGATTATGGGAGAGAAAGGGGACGGGGTTAGGGGAGGAAATAGTGGATTGTTCTTGAAATCTCTAGCTCAGCTTCCAGGAAAAAGAGACGCAGAGAAGCTAGAGTGTCTCGCTTTTTGGCGTATTGAGAGTGGAAAGTGAGCGCTTAAACTTCCAAGCGGCGTATCTCAAAAACTAAAACTTTTAAAAAAAAGTTGTCAACTAAGAAAATGTGTAAAATTTTACGCTCTTTATTTTGTTAGTTGACAAAAATTTGCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATTTGTTAGACCTTAAACATT</pcr_primer_p1>
		<pcr_primer_p2>CCCGATTTTCTCCTATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>694</pcr_amplicon_size>
		<canonical_amplicon>CTCTAAAGTGATGGTTAGTGCTAATAGCTAAAAATTGAACTCAAAAATTTTTTTTTAATTCCCATTTTTTTTTGAAAAAGTAGTGAAAAAATAGGAGAAAATCGGG</canonical_amplicon>
		<polymorphic_amplicon>CYCTAAAGTGATGGTTAGTGCTAATAGCTAAAAATTGAACTCAAAAATTTTTTTTTAATTCCCATTTTTTTTTGAAAAAGTAGTGAAAAAATAGGAGAAAATCGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14287</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>70171</contig_pos>
        <strand>+</strand>
        <context>ATTCGTCTTT[G/T]AACGGTTTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCCTCTGGTTTCGTCTGAAAATAACTTAATTTCGATTTAAATTCGTCTTT</left_flank>
        <right_flank>AACGGTTTAAGACACTAAATTCCCTTAAAAATCAGTTGTTCTCATTGGAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCTTCGTTTTTTTTTCATAGTGGTTTATGAAGGAATTTCGGGTTTTTATCTCATTTTTCTCAAATTTTAATACTTTTTTAGTGCAAATTAGCTCTAAAGTTGGCTTTTCAGGTCCCTCAAAAAGTAGTCTGACTGCTCAGATACAACTCAACATCTTCTCTCGTTCCACAAATACATACACACATCGAACAATTAGTGGAGAATCGACAAACGAGATGTGCGAGAGAGAGAGAGTGAAATGACAAGAGACGCAGAGAAAATCTCTCGTTGAGCCGCCCAAAAGGCGAGAGAGGGAGATGATCTTGTGTTTCAGGATGCCTTCTTTTGGGACACTAGAGGAGTACTAGAGAAGGGGGAACATATATCAAAAACTAGAAAAAATACTCACCAGCGGAATTTGAAACAACAGGCTCCTGAGTTTCTGGCGACGTTGATGCTTCCTTAGATCCCTCTGGTTTCGTCTGAAAATAACTTAATTTCGATTTAAATTCGTCTTTGAACGGTTTAAGACACTAAATTCCCTTAAAAATCAGTTGTTCTCATTGGAGCGAACTATCTTACACCTCACGATGGCCCCCCGACGCTCCTCAAAAAGTTTGGCGACCCGCTCCCTTCTAATCGCCCGGCACACCTATAATTCCTGCGCGCCTTCGTGGCTTACTGGCTAACGCTGCCGCCCTCAATTTAGCCCACTGGGGTTCGAACCCCACTAGAGGCAATATTGTTTTTTCTTCTTTTTTATTCATTCTCAAGTGTTTCTAAACGAACCTCTCGATGATTTGGTGATACATTCGACGAGACACAACCCATACTGCCAGCTGTCTGCCTTCCATTATCGTCTTCTGAGCGATGAGATGATGATGCCTGAAGAATAGGAGGATACTTATATGTATTTATGAAAAGAGGAGAGCACAGATGAATGTCATTTGAGGGGATGACTGACAAAATAGAAAATGGGACAGGGACACATGTCTCTTGAGATCATCAAGTGGTTTCGT</canonical>
            <polymorphic>TGTCTTCGTTTTTTTTTCATAGTGGTTTATGAAGGAATTTCGGGTTTTTATCTCATTTTTCTCAAATTTTAATACTTTTTTAGTGCAAATTAGCTCTAAAGTTGGCTTTTCAGGTCCCTCAAAAAGTAGTCTGACTGCTCAGATACAACTCAACATCTTCTCTCGTTCCACAAATACATACACACATCGAACAATTAGTGGAGAATCGACAAACGAGATGTGCGAGAGAGAGAGAGTGAAATGACAAGAGACGCAGAGAAAATCTCTCGTTGAGCCGCCCAAAAGGCGAGAGAGGGAGATGATCTTGTGTTTCAGGATGCCTTCTTTTGGGACACTAGAGGAGTACTAGAGAAGGGGGAACATATATCAAAAACTAGAAAAAATACTCACCAGCGGAATTTGAAACAACAGGCTCCTGAGTTTCTGGCGACGTTGATGCTTCCTTAGATCCCTCTGGTTTCGTCTGAAAATAACTTAATTTCGATTTAAATTCGTCTTTKAACGGTTTAAGACACTAAATTCCCTTAAAAATCAGTTGTTCTCATTGGAGCGAACTATCTTACACCTCACGATGGCCCCCCGACGCTCCTCAAAAAGTTTGGCGACCCGCTCCCTTCTAATCGCCCGGCACACCTATAATTCCTGCGCGCCTTCGTGGCTTACTGGCTAACGCTGCCGCCCTCAATTTAGCCCACTGGGGTTCGAACCCCACTAGAGGCAATATTGTTTTTTCTTCTTTTTTATTCATTCTCAAGTGTTTCTAAACGAACCTCTCGATGATTTGGTGATACATTCGACGAGACACAACCCATACTGCCAGCTGTCTGCCTTCCATTATCGTCTTCTGAGCGATGAGATGATGATGCCTGAAGAATAGGAGGATACTTATATGTATTTATGAAAAGAGGAGAGCACAGATGAATGTCATTTGAGGGGATGACTGACAAAATAGAAAATGGGACAGGGACACATGTCTCTTGAGATCATCAAGTGGTTTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGGACACTAGAGGAGTACTAGA</pcr_primer_p1>
		<pcr_primer_p2>CATCGTGAGGTGTAAGATAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGGGACACTAGAGGAGTACTAGAGAAGGGGGAACATATATCAAAAACTAGAAAAAATACTCACCAGCGGAATTTGAAACAACAGGCTCCTGAGTTTCTGGCGACGTTGATGCTTCCTTAGATCCCTCTGGTTTCGTCTGAAAATAACTTAATTTCGATTTAAATTCGTCTTTGAACGGTTTAAGACACTAAATTCCCTTAAAAATCAGTTGTTCTCATTGGAGCGAACTATCTTACACCTCACGATG</canonical_amplicon>
		<polymorphic_amplicon>TGGGACACTAGAGGAGTACTAGAGAAGGGGGAACATATATCAAAAACTAGAAAAAATACTCACCAGCGGAATTTGAAACAACAGGCTCCTGAGTTTCTGGCGACGTTGATGCTTCCTTAGATCCCTCTGGTTTCGTCTGAAAATAACTTAATTTCGATTTAAATTCGTCTTTKAACGGTTTAAGACACTAAATTCCCTTAAAAATCAGTTGTTCTCATTGGAGCGAACTATCTTACACCTCACGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14288</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>69715</contig_pos>
        <strand>+</strand>
        <context>GGAATTTYGG[A/G]TTTTTATCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTTTTTTGTCTTCGTTTTTTTTTCATAGTGGTTTATGAAGGAATTTCGG</left_flank>
        <right_flank>TTTTTATCTCATTTTTCTCAAATTTTAATACTTTTTTAGTGCAAATTAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTACCTTCTTAATATTCTTGTTTTGCGACCTCCTTGTAATCTCCTTTTCCATTTCGCTCATCTGTTTCCGAATCAACGAATCCGTTCGATCGCCGGAATTCTTTCTCTTCTCCTCCGATTTCTCTTCTCCAGATGACGTGGATTCTGGAGACGCTTCTCCCGAAATGACGTCGCCAACGGCAACGTCAGAGGAGGTTGGAACCAGGGTGTCTTCTGAAAAATTTCTAATTTAGCGCTTGATTTTTAGTAATTGTCAGCAGAGCGCGTTTTCATATTTCCTAATTTTACATTACAAAAAAAATTTGGCCGCTCGCTTTCCTTTGAAAAGTTGCGCCGACCACCACCTTCCTAATTACCTTCGCTCTCACAGTTAAACTGTGCGCGCGTAGCCTAGTGGCTAAAACTGCTGCTCTTTAGTTTTGAAGTCTCGGGTTCGACACCCACCGGCGGTTTTTTGTCTTCGTTTTTTTTTCATAGTGGTTTATGAAGGAATTTCGGGTTTTTATCTCATTTTTCTCAAATTTTAATACTTTTTTAGTGCAAATTAGCTCTAAAGTTGGCTTTTCAGGTCCCTCAAAAAGTAGTCTGACTGCTCAGATACAACTCAACATCTTCTCTCGTTCCACAAATACATACACACATCGAACAATTAGTGGAGAATCGACAAACGAGATGTGCGAGAGAGAGAGAGTGAAATGACAAGAGACGCAGAGAAAATCTCTCGTTGAGCCGCCCAAAAGGCGAGAGAGGGAGATGATCTTGTGTTTCAGGATGCCTTCTTTTGGGACACTAGAGGAGTACTAGAGAAGGGGGAACATATATCAAAAACTAGAAAAAATACTCACCAGCGGAATTTGAAACAACAGGCTCCTGAGTTTCTGGCGACGTTGATGCTTCCTTAGATCCCTCTGGTTTCGTCTGAAAATAACTTAATTTCGATTTAAATTCGTCTTTGAACGGTTTAAGACACTAAATTCCCTTAAAAATCAGTTGTTCTCA</canonical>
            <polymorphic>CTTACCTTCTTAATATTCTTGTTTTGCGACCTCCTTGTAATCTCCTTTTCCATTTCGCTCATCTGTTTCCGAATCAACGAATCCGTTCGATCGCCGGAATTCTTTCTCTTCTCCTCCGATTTCTCTTCTCCAGATGACGTGGATTCTGGAGACGCTTCTCCCGAAATGACGTCGCCAACGGCAACGTCAGAGGAGGTTGGAACCAGGGTGTCTTCTGAAAAATTTCTAATTTAGCGCTTGATTTTTAGTAATTGTCAGCAGAGCGCGTTTTCATATTTCCTAATTTTACATTACAAAAAAAATTTGGCCGCTCGCTTTCCTTTGAAAAGTTGCGCCGACCACCACCTTCCTAATTACCTTCGCTCTCACAGTTAAACTGTGCGCGCGTAGCCTAGTGGCTAAAACTGCTGCTCTTTAGTTTTGAAGTCTCGGGTTCGACACCCACCGGCGGTTTTTTGTCTTCGTTTTTTTTTCATAGTGGTTTATGAAGGAATTTCGGRTTTTTATCTCATTTTTCTCAAATTTTAATACTTTTTTAGTGCAAATTAGCTCTAAAGTTGGCTTTTCAGGTCCCTCAAAAAGTAGTCTGACTGCTCAGATACAACTCAACATCTTCTCTCGTTCCACAAATACATACACACATCGAACAATTAGTGGAGAATCGACAAACGAGATGTGCGAGAGAGAGAGAGTGAAATGACAAGAGACGCAGAGAAAATCTCTCGTTGAGCCGCCCAAAAGGCGAGAGAGGGAGATGATCTTGTGTTTCAGGATGCCTTCTTTTGGGACACTAGAGGAGTACTAGAGAAGGGGGAACATATATCAAAAACTAGAAAAAATACTCACCAGCGGAATTTGAAACAACAGGCTCCTGAGTTTCTGGCGACGTTGATGCTTCCTTAGATCCCTCTGGTTTCGTCTGAAAATAACTTAATTTCGATTTAAATTCGTCTTTGAACGGTTTAAGACACTAAATTCCCTTAAAAATCAGTTGTTCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTAGCCTAGTGGCTAAAACT</pcr_primer_p1>
		<pcr_primer_p2>GTATGTATTTGTGGAACGAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGTAGCCTAGTGGCTAAAACTGCTGCTCTTTAGTTTTGAAGTCTCGGGTTCGACACCCACCGGCGGTTTTTTGTCTTCGTTTTTTTTTCATAGTGGTTTATGAAGGAATTTCGGGTTTTTATCTCATTTTTCTCAAATTTTAATACTTTTTTAGTGCAAATTAGCTCTAAAGTTGGCTTTTCAGGTCCCTCAAAAAGTAGTCTGACTGCTCAGATACAACTCAACATCTTCTCTCGTTCCACAAATACATAC</canonical_amplicon>
		<polymorphic_amplicon>CGTAGCCTAGTGGCTAAAACTGCTGCTCTTTAGTTTTGAAGTCTCGGGTTCGACACCCACCGGCGGTTTTTTGTCTTCGTTTTTTTTTCATAGTGGTTTATGAAGGAATTTCGGRTTTTTATCTCATTTTTCTCAAATTTTAATACTTTTTTAGTGCAAATTAGCTCTAAAGTTGGCTTTTCAGGTCCCTCAAAAAGTAGTCTGACTGCTCAGATACAACTCAACATCTTCTCTCGTTCCACAAATACATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14289</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>69712</contig_pos>
        <strand>+</strand>
        <context>GAAGGAATTT[C/T]GGRTTTTTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCGGTTTTTTGTCTTCGTTTTTTTTTCATAGTGGTTTATGAAGGAATTT</left_flank>
        <right_flank>GGGTTTTTATCTCATTTTTCTCAAATTTTAATACTTTTTTAGTGCAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACTTACCTTCTTAATATTCTTGTTTTGCGACCTCCTTGTAATCTCCTTTTCCATTTCGCTCATCTGTTTCCGAATCAACGAATCCGTTCGATCGCCGGAATTCTTTCTCTTCTCCTCCGATTTCTCTTCTCCAGATGACGTGGATTCTGGAGACGCTTCTCCCGAAATGACGTCGCCAACGGCAACGTCAGAGGAGGTTGGAACCAGGGTGTCTTCTGAAAAATTTCTAATTTAGCGCTTGATTTTTAGTAATTGTCAGCAGAGCGCGTTTTCATATTTCCTAATTTTACATTACAAAAAAAATTTGGCCGCTCGCTTTCCTTTGAAAAGTTGCGCCGACCACCACCTTCCTAATTACCTTCGCTCTCACAGTTAAACTGTGCGCGCGTAGCCTAGTGGCTAAAACTGCTGCTCTTTAGTTTTGAAGTCTCGGGTTCGACACCCACCGGCGGTTTTTTGTCTTCGTTTTTTTTTCATAGTGGTTTATGAAGGAATTTCGGGTTTTTATCTCATTTTTCTCAAATTTTAATACTTTTTTAGTGCAAATTAGCTCTAAAGTTGGCTTTTCAGGTCCCTCAAAAAGTAGTCTGACTGCTCAGATACAACTCAACATCTTCTCTCGTTCCACAAATACATACACACATCGAACAATTAGTGGAGAATCGACAAACGAGATGTGCGAGAGAGAGAGAGTGAAATGACAAGAGACGCAGAGAAAATCTCTCGTTGAGCCGCCCAAAAGGCGAGAGAGGGAGATGATCTTGTGTTTCAGGATGCCTTCTTTTGGGACACTAGAGGAGTACTAGAGAAGGGGGAACATATATCAAAAACTAGAAAAAATACTCACCAGCGGAATTTGAAACAACAGGCTCCTGAGTTTCTGGCGACGTTGATGCTTCCTTAGATCCCTCTGGTTTCGTCTGAAAATAACTTAATTTCGATTTAAATTCGTCTTTGAACGGTTTAAGACACTAAATTCCCTTAAAAATCAGTTGTTC</canonical>
            <polymorphic>ACACTTACCTTCTTAATATTCTTGTTTTGCGACCTCCTTGTAATCTCCTTTTCCATTTCGCTCATCTGTTTCCGAATCAACGAATCCGTTCGATCGCCGGAATTCTTTCTCTTCTCCTCCGATTTCTCTTCTCCAGATGACGTGGATTCTGGAGACGCTTCTCCCGAAATGACGTCGCCAACGGCAACGTCAGAGGAGGTTGGAACCAGGGTGTCTTCTGAAAAATTTCTAATTTAGCGCTTGATTTTTAGTAATTGTCAGCAGAGCGCGTTTTCATATTTCCTAATTTTACATTACAAAAAAAATTTGGCCGCTCGCTTTCCTTTGAAAAGTTGCGCCGACCACCACCTTCCTAATTACCTTCGCTCTCACAGTTAAACTGTGCGCGCGTAGCCTAGTGGCTAAAACTGCTGCTCTTTAGTTTTGAAGTCTCGGGTTCGACACCCACCGGCGGTTTTTTGTCTTCGTTTTTTTTTCATAGTGGTTTATGAAGGAATTTYGGGTTTTTATCTCATTTTTCTCAAATTTTAATACTTTTTTAGTGCAAATTAGCTCTAAAGTTGGCTTTTCAGGTCCCTCAAAAAGTAGTCTGACTGCTCAGATACAACTCAACATCTTCTCTCGTTCCACAAATACATACACACATCGAACAATTAGTGGAGAATCGACAAACGAGATGTGCGAGAGAGAGAGAGTGAAATGACAAGAGACGCAGAGAAAATCTCTCGTTGAGCCGCCCAAAAGGCGAGAGAGGGAGATGATCTTGTGTTTCAGGATGCCTTCTTTTGGGACACTAGAGGAGTACTAGAGAAGGGGGAACATATATCAAAAACTAGAAAAAATACTCACCAGCGGAATTTGAAACAACAGGCTCCTGAGTTTCTGGCGACGTTGATGCTTCCTTAGATCCCTCTGGTTTCGTCTGAAAATAACTTAATTTCGATTTAAATTCGTCTTTGAACGGTTTAAGACACTAAATTCCCTTAAAAATCAGTTGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTAGCCTAGTGGCTAAAACT</pcr_primer_p1>
		<pcr_primer_p2>GTATGTATTTGTGGAACGAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGTAGCCTAGTGGCTAAAACTGCTGCTCTTTAGTTTTGAAGTCTCGGGTTCGACACCCACCGGCGGTTTTTTGTCTTCGTTTTTTTTTCATAGTGGTTTATGAAGGAATTTCGGGTTTTTATCTCATTTTTCTCAAATTTTAATACTTTTTTAGTGCAAATTAGCTCTAAAGTTGGCTTTTCAGGTCCCTCAAAAAGTAGTCTGACTGCTCAGATACAACTCAACATCTTCTCTCGTTCCACAAATACATAC</canonical_amplicon>
		<polymorphic_amplicon>CGTAGCCTAGTGGCTAAAACTGCTGCTCTTTAGTTTTGAAGTCTCGGGTTCGACACCCACCGGCGGTTTTTTGTCTTCGTTTTTTTTTCATAGTGGTTTATGAAGGAATTTYGGGTTTTTATCTCATTTTTCTCAAATTTTAATACTTTTTTAGTGCAAATTAGCTCTAAAGTTGGCTTTTCAGGTCCCTCAAAAAGTAGTCTGACTGCTCAGATACAACTCAACATCTTCTCTCGTTCCACAAATACATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14290</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>69675</contig_pos>
        <strand></strand>
        <context>GGYTTTTTGT[C/T]TTCGTTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTCTTTAGTTTTGAAGTCTCGGGTTCGACACCCACCGGCGGTTTTTTGT</left_flank>
        <right_flank>TTCGTTTTTTTTTCATAGTGGTTTATGAAGGAATTTCGGGTTTTTATCTC</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAAGTTGTAGAGCCCCTCTTCCTCACACTAATTCTACACTTACCTTCTTAATATTCTTGTTTTGCGACCTCCTTGTAATCTCCTTTTCCATTTCGCTCATCTGTTTCCGAATCAACGAATCCGTTCGATCGCCGGAATTCTTTCTCTTCTCCTCCGATTTCTCTTCTCCAGATGACGTGGATTCTGGAGACGCTTCTCCCGAAATGACGTCGCCAACGGCAACGTCAGAGGAGGTTGGAACCAGGGTGTCTTCTGAAAAATTTCTAATTTAGCGCTTGATTTTTAGTAATTGTCAGCAGAGCGCGTTTTCATATTTCCTAATTTTACATTACAAAAAAAATTTGGCCGCTCGCTTTCCTTTGAAAAGTTGCGCCGACCACCACCTTCCTAATTACCTTCGCTCTCACAGTTAAACTGTGCGCGCGTAGCCTAGTGGCTAAAACTGCTGCTCTTTAGTTTTGAAGTCTCGGGTTCGACACCCACCGGCGGTTTTTTGTCTTCGTTTTTTTTTCATAGTGGTTTATGAAGGAATTTCGGGTTTTTATCTCATTTTTCTCAAATTTTAATACTTTTTTAGTGCAAATTAGCTCTAAAGTTGGCTTTTCAGGTCCCTCAAAAAGTAGTCTGACTGCTCAGATACAACTCAACATCTTCTCTCGTTCCACAAATACATACACACATCGAACAATTAGTGGAGAATCGACAAACGAGATGTGCGAGAGAGAGAGAGTGAAATGACAAGAGACGCAGAGAAAATCTCTCGTTGAGCCGCCCAAAAGGCGAGAGAGGGAGATGATCTTGTGTTTCAGGATGCCTTCTTTTGGGACACTAGAGGAGTACTAGAGAAGGGGGAACATATATCAAAAACTAGAAAAAATACTCACCAGCGGAATTTGAAACAACAGGCTCCTGAGTTTCTGGCGACGTTGATGCTTCCTTAGATCCCTCTGGTTTCGTCTGAAAATAACTTAATTTCGATTTAAATTCGTCTTTGAACG</canonical>
            <polymorphic>TTTAAGTTGTAGAGCCCCTCTTCCTCACACTAATTCTACACTTACCTTCTTAATATTCTTGTTTTGCGACCTCCTTGTAATCTCCTTTTCCATTTCGCTCATCTGTTTCCGAATCAACGAATCCGTTCGATCGCCGGAATTCTTTCTCTTCTCCTCCGATTTCTCTTCTCCAGATGACGTGGATTCTGGAGACGCTTCTCCCGAAATGACGTCGCCAACGGCAACGTCAGAGGAGGTTGGAACCAGGGTGTCTTCTGAAAAATTTCTAATTTAGCGCTTGATTTTTAGTAATTGTCAGCAGAGCGCGTTTTCATATTTCCTAATTTTACATTACAAAAAAAATTTGGCCGCTCGCTTTCCTTTGAAAAGTTGCGCCGACCACCACCTTCCTAATTACCTTCGCTCTCACAGTTAAACTGTGCGCGCGTAGCCTAGTGGCTAAAACTGCTGCTCTTTAGTTTTGAAGTCTCGGGTTCGACACCCACCGGCGGTTTTTTGTYTTCGTTTTTTTTTCATAGTGGTTTATGAAGGAATTTCGGGTTTTTATCTCATTTTTCTCAAATTTTAATACTTTTTTAGTGCAAATTAGCTCTAAAGTTGGCTTTTCAGGTCCCTCAAAAAGTAGTCTGACTGCTCAGATACAACTCAACATCTTCTCTCGTTCCACAAATACATACACACATCGAACAATTAGTGGAGAATCGACAAACGAGATGTGCGAGAGAGAGAGAGTGAAATGACAAGAGACGCAGAGAAAATCTCTCGTTGAGCCGCCCAAAAGGCGAGAGAGGGAGATGATCTTGTGTTTCAGGATGCCTTCTTTTGGGACACTAGAGGAGTACTAGAGAAGGGGGAACATATATCAAAAACTAGAAAAAATACTCACCAGCGGAATTTGAAACAACAGGCTCCTGAGTTTCTGGCGACGTTGATGCTTCCTTAGATCCCTCTGGTTTCGTCTGAAAATAACTTAATTTCGATTTAAATTCGTCTTTGAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTAGCCTAGTGGCTAAAACT</pcr_primer_p1>
		<pcr_primer_p2>GTATGTATTTGTGGAACGAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGTAGCCTAGTGGCTAAAACTGCTGCTCTTTAGTTTTGAAGTCTCGGGTTCGACACCCACCGGCGGTTTTTTGTCTTCGTTTTTTTTTCATAGTGGTTTATGAAGGAATTTCGGGTTTTTATCTCATTTTTCTCAAATTTTAATACTTTTTTAGTGCAAATTAGCTCTAAAGTTGGCTTTTCAGGTCCCTCAAAAAGTAGTCTGACTGCTCAGATACAACTCAACATCTTCTCTCGTTCCACAAATACATAC</canonical_amplicon>
		<polymorphic_amplicon>CGTAGCCTAGTGGCTAAAACTGCTGCTCTTTAGTTTTGAAGTCTCGGGTTCGACACCCACCGGCGGTTTTTTGTYTTCGTTTTTTTTTCATAGTGGTTTATGAAGGAATTTCGGGTTTTTATCTCATTTTTCTCAAATTTTAATACTTTTTTAGTGCAAATTAGCTCTAAAGTTGGCTTTTCAGGTCCCTCAAAAAGTAGTCTGACTGCTCAGATACAACTCAACATCTTCTCTCGTTCCACAAATACATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14322</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>74376</contig_pos>
        <strand>+</strand>
        <context>attggagcgc[A/G]cttgaagtga</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACTAGGTTTCAAAAATTTTCATTTTTCTCAAAATTTGCAATTGGAGCGC</left_flank>
        <right_flank>CTTGAAGTGAAACCGTCCATTTTATCGATAAACTATTGAAAATTTTGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCATTTGTCCCCTAAGTGTCTGTTGTCAATGGAGCGCATATTGTCAAGTTTCTTAAAACTGCCATAACTCGGTTCATTTTACACCTAGAAAATTTTACTTGTTAGTTTTGGAATAATCAAAACAAGCCAGATAAAAAGAGTATAATCAAGACTGGGTTCTGGTATTCTAGTTTTTCTCAATGGGGCGCACTTGGTCATATTTATTAAAACTGTTATAACTCGGTTCATTTTGCAGCTAGAGCAATGAAAACAGTTGTGTCATCAGCAAAACAAGTCAGATAAAATGAGTATAAACATGGTTTAGTTCCAAAAATGTTAATTTTTAGCAATGTGGCGCATTTGACTAAATTCATTAAAATTACAATAACTCGGTTAATTTTGCACTTGGAACAATGAAAGTTTTAGTTTCGGAATCTGCAAAATAAGACAGATAAAATGAGTATAATCATGACTAGGTTTCAAAAATTTTCATTTTTCTCAAAATTTGCAATTGGAGCGCGCTTGAAGTGAAACCGTCCATTTTATCGATAAACTATTGAAAATTTTGTTTTAAAAAAAGAAAGAAATGAAACATACGAAATGGGACTTGTTGTTGCTCGGCGGTAGTTGTCCCACCACCACCCGGAACTCCGCCCCCTTTCAAAGGGGGCGTGGCCGCCGGCGTTGTGGAGGCCGTGGCCGAGACGACTTCTGGAGCCGCTTCAGATGACATCCTGAAAATTCTGCCTGTTCAATGATGAAAATGGGGAGGGGACCAATAGAAACGGGACGGAAAAAGGACATGGATTATTGGGTGCTTCGTGTCTCGTGTCGAATTAATTAGGAAGAGAGAGAGAGAAAGAGGGAGGAGAGACGCAGAGACATCGAGAGAGTATAGAAAGAGAAGCGAGACTTAGAGAAATAGGGAAACGTGGGAAAGCGAAGGGAGGGAGAGAATTAATTTACTTGCTCCATCCAACTTGATGTGTGTCGAATGAATAAGGCAGGGAAACGTTAGTTA</canonical>
            <polymorphic>CCATTTGTCCCCTAAGTGTCTGTTGTCAATGGAGCGCATATTGTCAAGTTTCTTAAAACTGCCATAACTCGGTTCATTTTACACCTAGAAAATTTTACTTGTTAGTTTTGGAATAATCAAAACAAGCCAGATAAAAAGAGTATAATCAAGACTGGGTTCTGGTATTCTAGTTTTTCTCAATGGGGCGCACTTGGTCATATTTATTAAAACTGTTATAACTCGGTTCATTTTGCAGCTAGAGCAATGAAAACAGTTGTGTCATCAGCAAAACAAGTCAGATAAAATGAGTATAAACATGGTTTAGTTCCAAAAATGTTAATTTTTAGCAATGTGGCGCATTTGACTAAATTCATTAAAATTACAATAACTCGGTTAATTTTGCACTTGGAACAATGAAAGTTTTAGTTTCGGAATCTGCAAAATAAGACAGATAAAATGAGTATAATCATGACTAGGTTTCAAAAATTTTCATTTTTCTCAAAATTTGCAATTGGAGCGCRCTTGAAGTGAAACCGTCCATTTTATCGATAAACTATTGAAAATTTTGTTTTAAAAAAAGAAAGAAATGAAACATACGAAATGGGACTTGTTGTTGCTCGGCGGTAGTTGTCCCACCACCACCCGGAACTCCGCCCCCTTTCAAAGGGGGCGTGGCCGCCGGCGTTGTGGAGGCCGTGGCCGAGACGACTTCTGGAGCCGCTTCAGATGACATCCTGAAAATTCTGCCTGTTCAATGATGAAAATGGGGAGGGGACCAATAGAAACGGGACGGAAAAAGGACATGGATTATTGGGTGCTTCGTGTCTCGTGTCGAATTAATTAGGAAGAGAGAGAGAGAAAGAGGGAGGAGAGACGCAGAGACATCGAGAGAGTATAGAAAGAGAAGCGAGACTTAGAGAAATAGGGAAACGTGGGAAAGCGAAGGGAGGGAGAGAATTAATTTACTTGCTCCATCCAACTTGATGTGTGTCGAATGAATAAGGCAGGGAAACGTTAGTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 162 151 149 36 2</canonical_bands>
                <polymorphic_bands>502 162 151 149 36</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGCGC</site>
                <isoschizomers>
                    <enzyme>BsePI</enzyme>
                    <enzyme>BssHII</enzyme>
                    <enzyme>PauI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 341 161</canonical_bands>
                <polymorphic_bands>659 341</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATCAGCAAAACAAGTCAGAT</pcr_primer_p1>
		<pcr_primer_p2>CGTATGTTTCATTTCTTTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>318</pcr_amplicon_size>
		<canonical_amplicon>CATCAGCAAAACAAGTCAGATAAAATGAGTATAAACATGGTTTAGTTCCAAAAATGTTAATTTTTAGCAATGTGGCGCATTTGACTAAATTCATTAAAATTACAATAACTCGGTTAATTTTGCACTTGGAACAATGAAAGTTTTAGTTTCGGAATCTGCAAAATAAGACAGATAAAATGAGTATAATCATGACTAGGTTTCAAAAATTTTCATTTTTCTCAAAATTTGCAATTGGAGCGCGCTTGAAGTGAAACCGTCCATTTTATCGATAAACTATTGAAAATTTTGTTTTAAAAAAAGAAAGAAATGAAACATACG</canonical_amplicon>
		<polymorphic_amplicon>CATCAGCAAAACAAGTCAGATAAAATGAGTATAAACATGGTTTAGTTCCAAAAATGTTAATTTTTAGCAATGTGGCGCATTTGACTAAATTCATTAAAATTACAATAACTCGGTTAATTTTGCACTTGGAACAATGAAAGTTTTAGTTTCGGAATCTGCAAAATAAGACAGATAAAATGAGTATAATCATGACTAGGTTTCAAAAATTTTCATTTTTCTCAAAATTTGCAATTGGAGCGCRCTTGAAGTGAAACCGTCCATTTTATCGATAAACTATTGAAAATTTTGTTTTAAAAAAAGAAAGAAATGAAACATACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14323</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>74406</contig_pos>
        <strand>+</strand>
        <context>ttttatcgat[A/G]aactattgaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATTTGCAATTGGAGCGCGCTTGAAGTGAAACCGTCCATTTTATCGAT</left_flank>
        <right_flank>AACTATTGAAAATTTTGTTTTAAAAAAAGAAAGAAATGAAACATACGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGCGCATATTGTCAAGTTTCTTAAAACTGCCATAACTCGGTTCATTTTACACCTAGAAAATTTTACTTGTTAGTTTTGGAATAATCAAAACAAGCCAGATAAAAAGAGTATAATCAAGACTGGGTTCTGGTATTCTAGTTTTTCTCAATGGGGCGCACTTGGTCATATTTATTAAAACTGTTATAACTCGGTTCATTTTGCAGCTAGAGCAATGAAAACAGTTGTGTCATCAGCAAAACAAGTCAGATAAAATGAGTATAAACATGGTTTAGTTCCAAAAATGTTAATTTTTAGCAATGTGGCGCATTTGACTAAATTCATTAAAATTACAATAACTCGGTTAATTTTGCACTTGGAACAATGAAAGTTTTAGTTTCGGAATCTGCAAAATAAGACAGATAAAATGAGTATAATCATGACTAGGTTTCAAAAATTTTCATTTTTCTCAAAATTTGCAATTGGAGCGCGCTTGAAGTGAAACCGTCCATTTTATCGATAAACTATTGAAAATTTTGTTTTAAAAAAAGAAAGAAATGAAACATACGAAATGGGACTTGTTGTTGCTCGGCGGTAGTTGTCCCACCACCACCCGGAACTCCGCCCCCTTTCAAAGGGGGCGTGGCCGCCGGCGTTGTGGAGGCCGTGGCCGAGACGACTTCTGGAGCCGCTTCAGATGACATCCTGAAAATTCTGCCTGTTCAATGATGAAAATGGGGAGGGGACCAATAGAAACGGGACGGAAAAAGGACATGGATTATTGGGTGCTTCGTGTCTCGTGTCGAATTAATTAGGAAGAGAGAGAGAGAAAGAGGGAGGAGAGACGCAGAGACATCGAGAGAGTATAGAAAGAGAAGCGAGACTTAGAGAAATAGGGAAACGTGGGAAAGCGAAGGGAGGGAGAGAATTAATTTACTTGCTCCATCCAACTTGATGTGTGTCGAATGAATAAGGCAGGGAAACGTTAGTTAGATTAAAACGGAAATTGAGAAAAAAAGTGC</canonical>
            <polymorphic>GGAGCGCATATTGTCAAGTTTCTTAAAACTGCCATAACTCGGTTCATTTTACACCTAGAAAATTTTACTTGTTAGTTTTGGAATAATCAAAACAAGCCAGATAAAAAGAGTATAATCAAGACTGGGTTCTGGTATTCTAGTTTTTCTCAATGGGGCGCACTTGGTCATATTTATTAAAACTGTTATAACTCGGTTCATTTTGCAGCTAGAGCAATGAAAACAGTTGTGTCATCAGCAAAACAAGTCAGATAAAATGAGTATAAACATGGTTTAGTTCCAAAAATGTTAATTTTTAGCAATGTGGCGCATTTGACTAAATTCATTAAAATTACAATAACTCGGTTAATTTTGCACTTGGAACAATGAAAGTTTTAGTTTCGGAATCTGCAAAATAAGACAGATAAAATGAGTATAATCATGACTAGGTTTCAAAAATTTTCATTTTTCTCAAAATTTGCAATTGGAGCGCGCTTGAAGTGAAACCGTCCATTTTATCGATRAACTATTGAAAATTTTGTTTTAAAAAAAGAAAGAAATGAAACATACGAAATGGGACTTGTTGTTGCTCGGCGGTAGTTGTCCCACCACCACCCGGAACTCCGCCCCCTTTCAAAGGGGGCGTGGCCGCCGGCGTTGTGGAGGCCGTGGCCGAGACGACTTCTGGAGCCGCTTCAGATGACATCCTGAAAATTCTGCCTGTTCAATGATGAAAATGGGGAGGGGACCAATAGAAACGGGACGGAAAAAGGACATGGATTATTGGGTGCTTCGTGTCTCGTGTCGAATTAATTAGGAAGAGAGAGAGAGAAAGAGGGAGGAGAGACGCAGAGACATCGAGAGAGTATAGAAAGAGAAGCGAGACTTAGAGAAATAGGGAAACGTGGGAAAGCGAAGGGAGGGAGAGAATTAATTTACTTGCTCCATCCAACTTGATGTGTGTCGAATGAATAAGGCAGGGAAACGTTAGTTAGATTAAAACGGAAATTGAGAAAAAAAGTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCAGCAAAACAAGTCAGAT</pcr_primer_p1>
		<pcr_primer_p2>CCATTTCGTATGTTTCATTTCT</pcr_primer_p2>
		<pcr_amplicon_size>324</pcr_amplicon_size>
		<canonical_amplicon>CATCAGCAAAACAAGTCAGATAAAATGAGTATAAACATGGTTTAGTTCCAAAAATGTTAATTTTTAGCAATGTGGCGCATTTGACTAAATTCATTAAAATTACAATAACTCGGTTAATTTTGCACTTGGAACAATGAAAGTTTTAGTTTCGGAATCTGCAAAATAAGACAGATAAAATGAGTATAATCATGACTAGGTTTCAAAAATTTTCATTTTTCTCAAAATTTGCAATTGGAGCGCGCTTGAAGTGAAACCGTCCATTTTATCGATAAACTATTGAAAATTTTGTTTTAAAAAAAGAAAGAAATGAAACATACGAAATGG</canonical_amplicon>
		<polymorphic_amplicon>CATCAGCAAAACAAGTCAGATAAAATGAGTATAAACATGGTTTAGTTCCAAAAATGTTAATTTTTAGCAATGTGGCGCATTTGACTAAATTCATTAAAATTACAATAACTCGGTTAATTTTGCACTTGGAACAATGAAAGTTTTAGTTTCGGAATCTGCAAAATAAGACAGATAAAATGAGTATAATCATGACTAGGTTTCAAAAATTTTCATTTTTCTCAAAATTTGCAATTGGAGCGCGCTTGAAGTGAAACCGTCCATTTTATCGATRAACTATTGAAAATTTTGTTTTAAAAAAAGAAAGAAATGAAACATACGAAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14324</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>74593</contig_pos>
        <strand>+</strand>
        <context>TGACATCCTG[A/C]AAATTCTGCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGGAGGCCGTGGCCGAGACGACTTCTGGAGCCGCTTCAGATGACATCCTG</left_flank>
        <right_flank>AAATTCTGCCTGTTCAATGATGAAAATGGGGAGGGGACCAATAGAAACGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCGGTTCATTTTGCAGCTAGAGCAATGAAAACAGTTGTGTCATCAGCAAAACAAGTCAGATAAAATGAGTATAAACATGGTTTAGTTCCAAAAATGTTAATTTTTAGCAATGTGGCGCATTTGACTAAATTCATTAAAATTACAATAACTCGGTTAATTTTGCACTTGGAACAATGAAAGTTTTAGTTTCGGAATCTGCAAAATAAGACAGATAAAATGAGTATAATCATGACTAGGTTTCAAAAATTTTCATTTTTCTCAAAATTTGCAATTGGAGCGCGCTTGAAGTGAAACCGTCCATTTTATCGATAAACTATTGAAAATTTTGTTTTAAAAAAAGAAAGAAATGAAACATACGAAATGGGACTTGTTGTTGCTCGGCGGTAGTTGTCCCACCACCACCCGGAACTCCGCCCCCTTTCAAAGGGGGCGTGGCCGCCGGCGTTGTGGAGGCCGTGGCCGAGACGACTTCTGGAGCCGCTTCAGATGACATCCTGAAAATTCTGCCTGTTCAATGATGAAAATGGGGAGGGGACCAATAGAAACGGGACGGAAAAAGGACATGGATTATTGGGTGCTTCGTGTCTCGTGTCGAATTAATTAGGAAGAGAGAGAGAGAAAGAGGGAGGAGAGACGCAGAGACATCGAGAGAGTATAGAAAGAGAAGCGAGACTTAGAGAAATAGGGAAACGTGGGAAAGCGAAGGGAGGGAGAGAATTAATTTACTTGCTCCATCCAACTTGATGTGTGTCGAATGAATAAGGCAGGGAAACGTTAGTTAGATTAAAACGGAAATTGAGAAAAAAAGTGCAATAGAGCGAGTTATCTGAAAAAGCAAACAACAGATTTGTTTTTCTCACAAAATTTCTGAAATTTTGAGTATTATATTTTAGTATTATATTCCTTAAAGTTTGATTTTTTTATCATTAGGGCGCATTTGCACCTGAAAATTAAAAATATCCGGAATATATTCAATATGGGGCTCAAAATGTTGGAAA</canonical>
            <polymorphic>ACTCGGTTCATTTTGCAGCTAGAGCAATGAAAACAGTTGTGTCATCAGCAAAACAAGTCAGATAAAATGAGTATAAACATGGTTTAGTTCCAAAAATGTTAATTTTTAGCAATGTGGCGCATTTGACTAAATTCATTAAAATTACAATAACTCGGTTAATTTTGCACTTGGAACAATGAAAGTTTTAGTTTCGGAATCTGCAAAATAAGACAGATAAAATGAGTATAATCATGACTAGGTTTCAAAAATTTTCATTTTTCTCAAAATTTGCAATTGGAGCGCGCTTGAAGTGAAACCGTCCATTTTATCGATAAACTATTGAAAATTTTGTTTTAAAAAAAGAAAGAAATGAAACATACGAAATGGGACTTGTTGTTGCTCGGCGGTAGTTGTCCCACCACCACCCGGAACTCCGCCCCCTTTCAAAGGGGGCGTGGCCGCCGGCGTTGTGGAGGCCGTGGCCGAGACGACTTCTGGAGCCGCTTCAGATGACATCCTGMAAATTCTGCCTGTTCAATGATGAAAATGGGGAGGGGACCAATAGAAACGGGACGGAAAAAGGACATGGATTATTGGGTGCTTCGTGTCTCGTGTCGAATTAATTAGGAAGAGAGAGAGAGAAAGAGGGAGGAGAGACGCAGAGACATCGAGAGAGTATAGAAAGAGAAGCGAGACTTAGAGAAATAGGGAAACGTGGGAAAGCGAAGGGAGGGAGAGAATTAATTTACTTGCTCCATCCAACTTGATGTGTGTCGAATGAATAAGGCAGGGAAACGTTAGTTAGATTAAAACGGAAATTGAGAAAAAAAGTGCAATAGAGCGAGTTATCTGAAAAAGCAAACAACAGATTTGTTTTTCTCACAAAATTTCTGAAATTTTGAGTATTATATTTTAGTATTATATTCCTTAAAGTTTGATTTTTTTATCATTAGGGCGCATTTGCACCTGAAAATTAAAAATATCCGGAATATATTCAATATGGGGCTCAAAATGTTGGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>315 244 230 152 37 22</canonical_bands>
                <polymorphic_bands>315 244 230 174 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACGAAATGGGACTTGTTGT</pcr_primer_p1>
		<pcr_primer_p2>AATTAATTCGACACGAGACAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATACGAAATGGGACTTGTTGTTGCTCGGCGGTAGTTGTCCCACCACCACCCGGAACTCCGCCCCCTTTCAAAGGGGGCGTGGCCGCCGGCGTTGTGGAGGCCGTGGCCGAGACGACTTCTGGAGCCGCTTCAGATGACATCCTGAAAATTCTGCCTGTTCAATGATGAAAATGGGGAGGGGACCAATAGAAACGGGACGGAAAAAGGACATGGATTATTGGGTGCTTCGTGTCTCGTGTCGAATTAATT</canonical_amplicon>
		<polymorphic_amplicon>ATACGAAATGGGACTTGTTGTTGCTCGGCGGTAGTTGTCCCACCACCACCCGGAACTCCGCCCCCTTTCAAAGGGGGCGTGGCCGCCGGCGTTGTGGAGGCCGTGGCCGAGACGACTTCTGGAGCCGCTTCAGATGACATCCTGMAAATTCTGCCTGTTCAATGATGAAAATGGGGAGGGGACCAATAGAAACGGGACGGAAAAAGGACATGGATTATTGGGTGCTTCGTGTCTCGTGTCGAATTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14325</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>76138</contig_pos>
        <strand>+</strand>
        <context>GAGAGGAGTA[A/G]TAAGCGTAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAGATCCTTTCACATAAATTTCTCCAGTAAAAATAAAATGAGAGGAGTA</left_flank>
        <right_flank>TAAGCGTAAATGAAAATAAGAAAATAAATGATGGAAGAAGCGACGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAAAGACACTAATCCCAGGCAGAAAAAACAATATCATTCGAAGAAATTTTTTCACTTTTTGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTTTTTCAAGTTCTAGATCCTTTCACATAAATTTCTCCAGTAAAAATAAAATGAGAGGAGTAATAAGCGTAAATGAAAATAAGAAAATAAATGATGGAAGAAGCGACGAAAAAATAATAATAAGCTCTCTTTTCTCCAGGGAGAAAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGCTCCTAGGCGAGAGACTGAGCTTATTATTATTAAGACTAGGAAATGTGTGAGAATCTACATAAAAGGGGAAAACCATGGTCCCTTAGCTATGCTAATTGTGGTGTTTTCTGGAAAGTTCTATGTCTGTCTGTATGTCTGTCTATCCGAAAAAGGACAAAATGTGTGACCAAAAGGGAAACAAATGGGTGTCAGCGGAATGGATTTGAAACGGACGACTGGACACATTATAATACAAAACTAGTAGGATTTCGAGTAGAGAGATGGATCAGTGAGAGACGCAGAGAACCCATTGTTCTGCTGAGTTCACTTTGAACTCAATTATCTCGGCTCCAGTAAAAGATATAAAAAAGT</canonical>
            <polymorphic>GTAAAGACACTAATCCCAGGCAGAAAAAACAATATCATTCGAAGAAATTTTTTCACTTTTTGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTTTTTCAAGTTCTAGATCCTTTCACATAAATTTCTCCAGTAAAAATAAAATGAGAGGAGTARTAAGCGTAAATGAAAATAAGAAAATAAATGATGGAAGAAGCGACGAAAAAATAATAATAAGCTCTCTTTTCTCCAGGGAGAAAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGCTCCTAGGCGAGAGACTGAGCTTATTATTATTAAGACTAGGAAATGTGTGAGAATCTACATAAAAGGGGAAAACCATGGTCCCTTAGCTATGCTAATTGTGGTGTTTTCTGGAAAGTTCTATGTCTGTCTGTATGTCTGTCTATCCGAAAAAGGACAAAATGTGTGACCAAAAGGGAAACAAATGGGTGTCAGCGGAATGGATTTGAAACGGACGACTGGACACATTATAATACAAAACTAGTAGGATTTCGAGTAGAGAGATGGATCAGTGAGAGACGCAGAGAACCCATTGTTCTGCTGAGTTCACTTTGAACTCAATTATCTCGGCTCCAGTAAAAGATATAAAAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAGTTCTAGATCCTTTCACAT</pcr_primer_p1>
		<pcr_primer_p2>TTCTCACACATTTCCTAGTCTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>TCAAGTTCTAGATCCTTTCACATAAATTTCTCCAGTAAAAATAAAATGAGAGGAGTAATAAGCGTAAATGAAAATAAGAAAATAAATGATGGAAGAAGCGACGAAAAAATAATAATAAGCTCTCTTTTCTCCAGGGAGAAAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGCTCCTAGGCGAGAGACTGAGCTTATTATTATTAAGACTAGGAAATGTGTGAGAA</canonical_amplicon>
		<polymorphic_amplicon>TCAAGTTCTAGATCCTTTCACATAAATTTCTCCAGTAAAAATAAAATGAGAGGAGTARTAAGCGTAAATGAAAATAAGAAAATAAATGATGGAAGAAGCGACGAAAAAATAATAATAAGCTCTCTTTTCTCCAGGGAGAAAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGCTCCTAGGCGAGAGACTGAGCTTATTATTATTAAGACTAGGAAATGTGTGAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14326</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>109998</contig_pos>
        <strand></strand>
        <context>AAATCATGTC[G/A]AAATGGCAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTCATGTCATGGATGTGTTAGCAATCAAAATATATGAGGAAATCATGTC</left_flank>
        <right_flank>AAATGGCAAAAAATCGAAATTTTCAAATAAAAAATTGTTTTCAAAAAATT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGCTAGCTTGCAGGCGAATCAAAACACAATCTAGGTATAATTCCATGTTGGTAGATTAGCGCTTAGCTCACTTCAAGCTCCATAACTCCCTTTGAACTCAACATTTTGAATTTATCTCAAATGGATTATGTACCCATTGAAATTTTTTTCCTCTAGAATGGAGGCAATTAACACATAATTCAGTATAGGAGTTTTCGTCAAAAAGGGCAAAATGAAAACGACTCCCACAACCTTTTTGAAAGCCCTTTGTTTTAATTAAATAATTATTTTTTTTGAAAAGTTGTGATTTTTTTTTCTCACGGAGCTTAAAAATTTCAGTGAAAATTCCAGGTTCCTAGAGACTACAAAAATCCTGAAATTCGAAATATTTGGGAAATCTTAAAAATATTAAATTAAAAAATTTTAAAATTTCAAAAAATTTTTTTTCAAAAAATTCAAAGTTTTCAGCTTTCATGTCATGGATGTGTTAGCAATCAAAATATATGAGGAAATCATGTCGAAATGGCAAAAAATCGAAATTTTCAAATAAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTGGCCTTTAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTATTGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTTTGAGAAAATGCCCTTCTAGATTAAATAGCCTTCTCATAACAAAACTTTTCAAAACTGACCGGCTTGCTCAAGACTGATGGCCGAGGCCGTGGCCGAGACGACGATGAGGGCCAAAAGAGCCAAATAGACAGTTCGGTGAAGCATATTTGCTGCTTTCAGAGTACTTGGGAAGAACGTCAAGACTCTGTGTGGAGGAGAAATGGAATGAGAGCTCGCCGTCGAAGAAGTG</canonical>
            <polymorphic>ATGCTAGCTTGCAGGCGAATCAAAACACAATCTAGGTATAATTCCATGTTGGTAGATTAGCGCTTAGCTCACTTCAAGCTCCATAACTCCCTTTGAACTCAACATTTTGAATTTATCTCAAATGGATTATGTACCCATTGAAATTTTTTTCCTCTAGAATGGAGGCAATTAACACATAATTCAGTATAGGAGTTTTCGTCAAAAAGGGCAAAATGAAAACGACTCCCACAACCTTTTTGAAAGCCCTTTGTTTTAATTAAATAATTATTTTTTTTGAAAAGTTGTGATTTTTTTTTCTCACGGAGCTTAAAAATTTCAGTGAAAATTCCAGGTTCCTAGAGACTACAAAAATCCTGAAATTCGAAATATTTGGGAAATCTTAAAAATATTAAATTAAAAAATTTTAAAATTTCAAAAAATTTTTTTTCAAAAAATTCAAAGTTTTCAGCTTTCATGTCATGGATGTGTTAGCAATCAAAATATATGAGGAAATCATGTCRAAATGGCAAAAAATCGAAATTTTCAAATAAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTGGCCTTTAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTATTGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTTTGAGAAAATGCCCTTCTAGATTAAATAGCCTTCTCATAACAAAACTTTTCAAAACTGACCGGCTTGCTCAAGACTGATGGCCGAGGCCGTGGCCGAGACGACGATGAGGGCCAAAAGAGCCAAATAGACAGTTCGGTGAAGCATATTTGCTGCTTTCAGAGTACTTGGGAAGAACGTCAAGACTCTGTGTGGAGGAGAAATGGAATGAGAGCTCGCCGTCGAAGAAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>362 330 137 102 44 16 9</canonical_bands>
                <polymorphic_bands>362 330 153 102 44 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTCATGTCATGGATGTGTTA</pcr_primer_p1>
		<pcr_primer_p2>AAATACCGTTGTGTTCAATAGAG</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>CTTTCATGTCATGGATGTGTTAGCAATCAAAATATATGAGGAAATCATGTCGAAATGGCAAAAAATCGAAATTTTCAAATAAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTGGCCTTTAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTATTGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTCATGTCATGGATGTGTTAGCAATCAAAATATATGAGGAAATCATGTCRAAATGGCAAAAAATCGAAATTTTCAAATAAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTGGCCTTTAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTATTGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14327</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>110026</contig_pos>
        <strand></strand>
        <context>AATTTTCAAA[T/A]AAAAAATTgt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAATATATGAGGAAATCATGTCGAAATGGCAAAAAATCGAAATTTTCAAA</left_flank>
        <right_flank>AAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCTAGGTATAATTCCATGTTGGTAGATTAGCGCTTAGCTCACTTCAAGCTCCATAACTCCCTTTGAACTCAACATTTTGAATTTATCTCAAATGGATTATGTACCCATTGAAATTTTTTTCCTCTAGAATGGAGGCAATTAACACATAATTCAGTATAGGAGTTTTCGTCAAAAAGGGCAAAATGAAAACGACTCCCACAACCTTTTTGAAAGCCCTTTGTTTTAATTAAATAATTATTTTTTTTGAAAAGTTGTGATTTTTTTTTCTCACGGAGCTTAAAAATTTCAGTGAAAATTCCAGGTTCCTAGAGACTACAAAAATCCTGAAATTCGAAATATTTGGGAAATCTTAAAAATATTAAATTAAAAAATTTTAAAATTTCAAAAAATTTTTTTTCAAAAAATTCAAAGTTTTCAGCTTTCATGTCATGGATGTGTTAGCAATCAAAATATATGAGGAAATCATGTCGAAATGGCAAAAAATCGAAATTTTCAAATAAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTGGCCTTTAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTATTGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTTTGAGAAAATGCCCTTCTAGATTAAATAGCCTTCTCATAACAAAACTTTTCAAAACTGACCGGCTTGCTCAAGACTGATGGCCGAGGCCGTGGCCGAGACGACGATGAGGGCCAAAAGAGCCAAATAGACAGTTCGGTGAAGCATATTTGCTGCTTTCAGAGTACTTGGGAAGAACGTCAAGACTCTGTGTGGAGGAGAAATGGAATGAGAGCTCGCCGTCGAAGAAGTGGAGCTGCTCTCGAAAGTGGGCGGAGCCG</canonical>
            <polymorphic>AATCTAGGTATAATTCCATGTTGGTAGATTAGCGCTTAGCTCACTTCAAGCTCCATAACTCCCTTTGAACTCAACATTTTGAATTTATCTCAAATGGATTATGTACCCATTGAAATTTTTTTCCTCTAGAATGGAGGCAATTAACACATAATTCAGTATAGGAGTTTTCGTCAAAAAGGGCAAAATGAAAACGACTCCCACAACCTTTTTGAAAGCCCTTTGTTTTAATTAAATAATTATTTTTTTTGAAAAGTTGTGATTTTTTTTTCTCACGGAGCTTAAAAATTTCAGTGAAAATTCCAGGTTCCTAGAGACTACAAAAATCCTGAAATTCGAAATATTTGGGAAATCTTAAAAATATTAAATTAAAAAATTTTAAAATTTCAAAAAATTTTTTTTCAAAAAATTCAAAGTTTTCAGCTTTCATGTCATGGATGTGTTAGCAATCAAAATATATGAGGAAATCATGTCGAAATGGCAAAAAATCGAAATTTTCAAAWAAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTGGCCTTTAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTATTGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTTTGAGAAAATGCCCTTCTAGATTAAATAGCCTTCTCATAACAAAACTTTTCAAAACTGACCGGCTTGCTCAAGACTGATGGCCGAGGCCGTGGCCGAGACGACGATGAGGGCCAAAAGAGCCAAATAGACAGTTCGGTGAAGCATATTTGCTGCTTTCAGAGTACTTGGGAAGAACGTCAAGACTCTGTGTGGAGGAGAAATGGAATGAGAGCTCGCCGTCGAAGAAGTGGAGCTGCTCTCGAAAGTGGGCGGAGCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAATATATGAGGAAATCATGT</pcr_primer_p1>
		<pcr_primer_p2>AAATACCGTTGTGTTCAATAGAG</pcr_primer_p2>
		<pcr_amplicon_size>297</pcr_amplicon_size>
		<canonical_amplicon>TCAAAATATATGAGGAAATCATGTCGAAATGGCAAAAAATCGAAATTTTCAAATAAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTGGCCTTTAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTATTGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTT</canonical_amplicon>
		<polymorphic_amplicon>TCAAAATATATGAGGAAATCATGTCGAAATGGCAAAAAATCGAAATTTTCAAAWAAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTGGCCTTTAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTATTGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14329</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>110105</contig_pos>
        <strand></strand>
        <context>tgtgtgtttt[G/A]gccttyaaat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTT</left_flank>
        <right_flank>GCCTTTAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAATTTATCTCAAATGGATTATGTACCCATTGAAATTTTTTTCCTCTAGAATGGAGGCAATTAACACATAATTCAGTATAGGAGTTTTCGTCAAAAAGGGCAAAATGAAAACGACTCCCACAACCTTTTTGAAAGCCCTTTGTTTTAATTAAATAATTATTTTTTTTGAAAAGTTGTGATTTTTTTTTCTCACGGAGCTTAAAAATTTCAGTGAAAATTCCAGGTTCCTAGAGACTACAAAAATCCTGAAATTCGAAATATTTGGGAAATCTTAAAAATATTAAATTAAAAAATTTTAAAATTTCAAAAAATTTTTTTTCAAAAAATTCAAAGTTTTCAGCTTTCATGTCATGGATGTGTTAGCAATCAAAATATATGAGGAAATCATGTCGAAATGGCAAAAAATCGAAATTTTCAAATAAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTGGCCTTTAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTATTGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTTTGAGAAAATGCCCTTCTAGATTAAATAGCCTTCTCATAACAAAACTTTTCAAAACTGACCGGCTTGCTCAAGACTGATGGCCGAGGCCGTGGCCGAGACGACGATGAGGGCCAAAAGAGCCAAATAGACAGTTCGGTGAAGCATATTTGCTGCTTTCAGAGTACTTGGGAAGAACGTCAAGACTCTGTGTGGAGGAGAAATGGAATGAGAGCTCGCCGTCGAAGAAGTGGAGCTGCTCTCGAAAGTGGGCGGAGCCGAAAAGTTTCGCGGCGAAGTGGGCGGAGTCTTAAGAGACTTGGAAGGAGTCTATAAATCAAAGTTAGAGAGAGGGAGACG</canonical>
            <polymorphic>TGAATTTATCTCAAATGGATTATGTACCCATTGAAATTTTTTTCCTCTAGAATGGAGGCAATTAACACATAATTCAGTATAGGAGTTTTCGTCAAAAAGGGCAAAATGAAAACGACTCCCACAACCTTTTTGAAAGCCCTTTGTTTTAATTAAATAATTATTTTTTTTGAAAAGTTGTGATTTTTTTTTCTCACGGAGCTTAAAAATTTCAGTGAAAATTCCAGGTTCCTAGAGACTACAAAAATCCTGAAATTCGAAATATTTGGGAAATCTTAAAAATATTAAATTAAAAAATTTTAAAATTTCAAAAAATTTTTTTTCAAAAAATTCAAAGTTTTCAGCTTTCATGTCATGGATGTGTTAGCAATCAAAATATATGAGGAAATCATGTCGAAATGGCAAAAAATCGAAATTTTCAAATAAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTRGCCTTTAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTATTGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTTTGAGAAAATGCCCTTCTAGATTAAATAGCCTTCTCATAACAAAACTTTTCAAAACTGACCGGCTTGCTCAAGACTGATGGCCGAGGCCGTGGCCGAGACGACGATGAGGGCCAAAAGAGCCAAATAGACAGTTCGGTGAAGCATATTTGCTGCTTTCAGAGTACTTGGGAAGAACGTCAAGACTCTGTGTGGAGGAGAAATGGAATGAGAGCTCGCCGTCGAAGAAGTGGAGCTGCTCTCGAAAGTGGGCGGAGCCGAAAAGTTTCGCGGCGAAGTGGGCGGAGTCTTAAGAGACTTGGAAGGAGTCTATAAATCAAAGTTAGAGAGAGGGAGACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 243 226 18 6 6</canonical_bands>
                <polymorphic_bands>744 226 18 6 6</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>191 160 143 136 92 82 62 34 22 21 18 18 9 6 6</canonical_bands>
                <polymorphic_bands>351 143 136 92 82 62 34 22 21 18 18 9 6 6</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAAATATATGAGGAAATCATGT</pcr_primer_p1>
		<pcr_primer_p2>AAATACCGTTGTGTTCAATAGAG</pcr_primer_p2>
		<pcr_amplicon_size>297</pcr_amplicon_size>
		<canonical_amplicon>TCAAAATATATGAGGAAATCATGTCGAAATGGCAAAAAATCGAAATTTTCAAATAAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTGGCCTTTAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTATTGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTT</canonical_amplicon>
		<polymorphic_amplicon>TCAAAATATATGAGGAAATCATGTCGAAATGGCAAAAAATCGAAATTTTCAAATAAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTRGCCTTTAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTATTGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14330</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>110111</contig_pos>
        <strand></strand>
        <context>ttttrgcctt[T/C]aaatcatttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTGGCCTT</left_flank>
        <right_flank>AAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCTCAAATGGATTATGTACCCATTGAAATTTTTTTCCTCTAGAATGGAGGCAATTAACACATAATTCAGTATAGGAGTTTTCGTCAAAAAGGGCAAAATGAAAACGACTCCCACAACCTTTTTGAAAGCCCTTTGTTTTAATTAAATAATTATTTTTTTTGAAAAGTTGTGATTTTTTTTTCTCACGGAGCTTAAAAATTTCAGTGAAAATTCCAGGTTCCTAGAGACTACAAAAATCCTGAAATTCGAAATATTTGGGAAATCTTAAAAATATTAAATTAAAAAATTTTAAAATTTCAAAAAATTTTTTTTCAAAAAATTCAAAGTTTTCAGCTTTCATGTCATGGATGTGTTAGCAATCAAAATATATGAGGAAATCATGTCGAAATGGCAAAAAATCGAAATTTTCAAATAAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTGGCCTTTAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTATTGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTTTGAGAAAATGCCCTTCTAGATTAAATAGCCTTCTCATAACAAAACTTTTCAAAACTGACCGGCTTGCTCAAGACTGATGGCCGAGGCCGTGGCCGAGACGACGATGAGGGCCAAAAGAGCCAAATAGACAGTTCGGTGAAGCATATTTGCTGCTTTCAGAGTACTTGGGAAGAACGTCAAGACTCTGTGTGGAGGAGAAATGGAATGAGAGCTCGCCGTCGAAGAAGTGGAGCTGCTCTCGAAAGTGGGCGGAGCCGAAAAGTTTCGCGGCGAAGTGGGCGGAGTCTTAAGAGACTTGGAAGGAGTCTATAAATCAAAGTTAGAGAGAGGGAGACGCAGAGT</canonical>
            <polymorphic>TATCTCAAATGGATTATGTACCCATTGAAATTTTTTTCCTCTAGAATGGAGGCAATTAACACATAATTCAGTATAGGAGTTTTCGTCAAAAAGGGCAAAATGAAAACGACTCCCACAACCTTTTTGAAAGCCCTTTGTTTTAATTAAATAATTATTTTTTTTGAAAAGTTGTGATTTTTTTTTCTCACGGAGCTTAAAAATTTCAGTGAAAATTCCAGGTTCCTAGAGACTACAAAAATCCTGAAATTCGAAATATTTGGGAAATCTTAAAAATATTAAATTAAAAAATTTTAAAATTTCAAAAAATTTTTTTTCAAAAAATTCAAAGTTTTCAGCTTTCATGTCATGGATGTGTTAGCAATCAAAATATATGAGGAAATCATGTCGAAATGGCAAAAAATCGAAATTTTCAAATAAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTGGCCTTYAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTATTGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTTTGAGAAAATGCCCTTCTAGATTAAATAGCCTTCTCATAACAAAACTTTTCAAAACTGACCGGCTTGCTCAAGACTGATGGCCGAGGCCGTGGCCGAGACGACGATGAGGGCCAAAAGAGCCAAATAGACAGTTCGGTGAAGCATATTTGCTGCTTTCAGAGTACTTGGGAAGAACGTCAAGACTCTGTGTGGAGGAGAAATGGAATGAGAGCTCGCCGTCGAAGAAGTGGAGCTGCTCTCGAAAGTGGGCGGAGCCGAAAAGTTTCGCGGCGAAGTGGGCGGAGTCTTAAGAGACTTGGAAGGAGTCTATAAATCAAAGTTAGAGAGAGGGAGACGCAGAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 292 208</canonical_bands>
                <polymorphic_bands>708 292</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>266 208 180 84 73 56 55 50 10 9 5 4</canonical_bands>
                <polymorphic_bands>388 266 84 73 56 55 50 10 9 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAAATATATGAGGAAATCATGT</pcr_primer_p1>
		<pcr_primer_p2>AAATACCGTTGTGTTCAATAGAG</pcr_primer_p2>
		<pcr_amplicon_size>297</pcr_amplicon_size>
		<canonical_amplicon>TCAAAATATATGAGGAAATCATGTCGAAATGGCAAAAAATCGAAATTTTCAAATAAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTGGCCTTTAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTATTGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTT</canonical_amplicon>
		<polymorphic_amplicon>TCAAAATATATGAGGAAATCATGTCGAAATGGCAAAAAATCGAAATTTTCAAATAAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTGGCCTTYAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTATTGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14331</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>110191</contig_pos>
        <strand></strand>
        <context>agcaatacta[T/C]tggcgccgcg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTA</left_flank>
        <right_flank>TGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGTCAAAAAGGGCAAAATGAAAACGACTCCCACAACCTTTTTGAAAGCCCTTTGTTTTAATTAAATAATTATTTTTTTTGAAAAGTTGTGATTTTTTTTTCTCACGGAGCTTAAAAATTTCAGTGAAAATTCCAGGTTCCTAGAGACTACAAAAATCCTGAAATTCGAAATATTTGGGAAATCTTAAAAATATTAAATTAAAAAATTTTAAAATTTCAAAAAATTTTTTTTCAAAAAATTCAAAGTTTTCAGCTTTCATGTCATGGATGTGTTAGCAATCAAAATATATGAGGAAATCATGTCGAAATGGCAAAAAATCGAAATTTTCAAATAAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTGGCCTTTAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTATTGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTTTGAGAAAATGCCCTTCTAGATTAAATAGCCTTCTCATAACAAAACTTTTCAAAACTGACCGGCTTGCTCAAGACTGATGGCCGAGGCCGTGGCCGAGACGACGATGAGGGCCAAAAGAGCCAAATAGACAGTTCGGTGAAGCATATTTGCTGCTTTCAGAGTACTTGGGAAGAACGTCAAGACTCTGTGTGGAGGAGAAATGGAATGAGAGCTCGCCGTCGAAGAAGTGGAGCTGCTCTCGAAAGTGGGCGGAGCCGAAAAGTTTCGCGGCGAAGTGGGCGGAGTCTTAAGAGACTTGGAAGGAGTCTATAAATCAAAGTTAGAGAGAGGGAGACGCAGAGTGAGAGAGATTGATTGTGTGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA</canonical>
            <polymorphic>TTTCGTCAAAAAGGGCAAAATGAAAACGACTCCCACAACCTTTTTGAAAGCCCTTTGTTTTAATTAAATAATTATTTTTTTTGAAAAGTTGTGATTTTTTTTTCTCACGGAGCTTAAAAATTTCAGTGAAAATTCCAGGTTCCTAGAGACTACAAAAATCCTGAAATTCGAAATATTTGGGAAATCTTAAAAATATTAAATTAAAAAATTTTAAAATTTCAAAAAATTTTTTTTCAAAAAATTCAAAGTTTTCAGCTTTCATGTCATGGATGTGTTAGCAATCAAAATATATGAGGAAATCATGTCGAAATGGCAAAAAATCGAAATTTTCAAATAAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTGGCCTTTAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTAYTGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTTTGAGAAAATGCCCTTCTAGATTAAATAGCCTTCTCATAACAAAACTTTTCAAAACTGACCGGCTTGCTCAAGACTGATGGCCGAGGCCGTGGCCGAGACGACGATGAGGGCCAAAAGAGCCAAATAGACAGTTCGGTGAAGCATATTTGCTGCTTTCAGAGTACTTGGGAAGAACGTCAAGACTCTGTGTGGAGGAGAAATGGAATGAGAGCTCGCCGTCGAAGAAGTGGAGCTGCTCTCGAAAGTGGGCGGAGCCGAAAAGTTTCGCGGCGAAGTGGGCGGAGTCTTAAGAGACTTGGAAGGAGTCTATAAATCAAAGTTAGAGAGAGGGAGACGCAGAGTGAGAGAGATTGATTGTGTGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAATATATGAGGAAATCATGT</pcr_primer_p1>
		<pcr_primer_p2>AAATACCGTTGTGTTCAATAGAG</pcr_primer_p2>
		<pcr_amplicon_size>297</pcr_amplicon_size>
		<canonical_amplicon>TCAAAATATATGAGGAAATCATGTCGAAATGGCAAAAAATCGAAATTTTCAAATAAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTGGCCTTTAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTATTGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTT</canonical_amplicon>
		<polymorphic_amplicon>TCAAAATATATGAGGAAATCATGTCGAAATGGCAAAAAATCGAAATTTTCAAATAAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTGGCCTTTAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTAYTGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14332</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>110273</contig_pos>
        <strand></strand>
        <context>GGTATTTTGA[G/A]AAAATGCCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTTTGA</left_flank>
        <right_flank>AAAATGCCCTTCTAGATTAAATAGCCTTCTCATAACAAAACTTTTCAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAGTTGTGATTTTTTTTTCTCACGGAGCTTAAAAATTTCAGTGAAAATTCCAGGTTCCTAGAGACTACAAAAATCCTGAAATTCGAAATATTTGGGAAATCTTAAAAATATTAAATTAAAAAATTTTAAAATTTCAAAAAATTTTTTTTCAAAAAATTCAAAGTTTTCAGCTTTCATGTCATGGATGTGTTAGCAATCAAAATATATGAGGAAATCATGTCGAAATGGCAAAAAATCGAAATTTTCAAATAAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTGGCCTTTAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTATTGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTTTGAGAAAATGCCCTTCTAGATTAAATAGCCTTCTCATAACAAAACTTTTCAAAACTGACCGGCTTGCTCAAGACTGATGGCCGAGGCCGTGGCCGAGACGACGATGAGGGCCAAAAGAGCCAAATAGACAGTTCGGTGAAGCATATTTGCTGCTTTCAGAGTACTTGGGAAGAACGTCAAGACTCTGTGTGGAGGAGAAATGGAATGAGAGCTCGCCGTCGAAGAAGTGGAGCTGCTCTCGAAAGTGGGCGGAGCCGAAAAGTTTCGCGGCGAAGTGGGCGGAGTCTTAAGAGACTTGGAAGGAGTCTATAAATCAAAGTTAGAGAGAGGGAGACGCAGAGTGAGAGAGATTGATTGTGTGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA</canonical>
            <polymorphic>GAAAAGTTGTGATTTTTTTTTCTCACGGAGCTTAAAAATTTCAGTGAAAATTCCAGGTTCCTAGAGACTACAAAAATCCTGAAATTCGAAATATTTGGGAAATCTTAAAAATATTAAATTAAAAAATTTTAAAATTTCAAAAAATTTTTTTTCAAAAAATTCAAAGTTTTCAGCTTTCATGTCATGGATGTGTTAGCAATCAAAATATATGAGGAAATCATGTCGAAATGGCAAAAAATCGAAATTTTCAAATAAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTGGCCTTTAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTATTGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTTTGARAAAATGCCCTTCTAGATTAAATAGCCTTCTCATAACAAAACTTTTCAAAACTGACCGGCTTGCTCAAGACTGATGGCCGAGGCCGTGGCCGAGACGACGATGAGGGCCAAAAGAGCCAAATAGACAGTTCGGTGAAGCATATTTGCTGCTTTCAGAGTACTTGGGAAGAACGTCAAGACTCTGTGTGGAGGAGAAATGGAATGAGAGCTCGCCGTCGAAGAAGTGGAGCTGCTCTCGAAAGTGGGCGGAGCCGAAAAGTTTCGCGGCGAAGTGGGCGGAGTCTTAAGAGACTTGGAAGGAGTCTATAAATCAAAGTTAGAGAGAGGGAGACGCAGAGTGAGAGAGATTGATTGTGTGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAATATATGAGGAAATCATGT</pcr_primer_p1>
		<pcr_primer_p2>AACTGTCTATTTGGCTCTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>430</pcr_amplicon_size>
		<canonical_amplicon>TCAAAATATATGAGGAAATCATGTCGAAATGGCAAAAAATCGAAATTTTCAAATAAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTGGCCTTTAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTATTGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTTTGAGAAAATGCCCTTCTAGATTAAATAGCCTTCTCATAACAAAACTTTTCAAAACTGACCGGCTTGCTCAAGACTGATGGCCGAGGCCGTGGCCGAGACGACGATGAGGGCCAAAAGAGCCAAATAGACAGTT</canonical_amplicon>
		<polymorphic_amplicon>TCAAAATATATGAGGAAATCATGTCGAAATGGCAAAAAATCGAAATTTTCAAATAAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTGGCCTTTAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTATTGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTTTGARAAAATGCCCTTCTAGATTAAATAGCCTTCTCATAACAAAACTTTTCAAAACTGACCGGCTTGCTCAAGACTGATGGCCGAGGCCGTGGCCGAGACGACGATGAGGGCCAAAAGAGCCAAATAGACAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14333</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>110314</contig_pos>
        <strand></strand>
        <context>CATAACAAAA[C/A]TTTTCAAAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GTATTTTGAGAAAATGCCCTTCTAGATTAAATAGCCTTCTCATAACAAAA</left_flank>
        <right_flank>TTTTCAAAACTGACCGGCTTGCTCAAGACTGATGGCCGAGGCCGTGGCCG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTGAAAATTCCAGGTTCCTAGAGACTACAAAAATCCTGAAATTCGAAATATTTGGGAAATCTTAAAAATATTAAATTAAAAAATTTTAAAATTTCAAAAAATTTTTTTTCAAAAAATTCAAAGTTTTCAGCTTTCATGTCATGGATGTGTTAGCAATCAAAATATATGAGGAAATCATGTCGAAATGGCAAAAAATCGAAATTTTCAAATAAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTGGCCTTTAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTATTGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTTTGAGAAAATGCCCTTCTAGATTAAATAGCCTTCTCATAACAAAACTTTTCAAAACTGACCGGCTTGCTCAAGACTGATGGCCGAGGCCGTGGCCGAGACGACGATGAGGGCCAAAAGAGCCAAATAGACAGTTCGGTGAAGCATATTTGCTGCTTTCAGAGTACTTGGGAAGAACGTCAAGACTCTGTGTGGAGGAGAAATGGAATGAGAGCTCGCCGTCGAAGAAGTGGAGCTGCTCTCGAAAGTGGGCGGAGCCGAAAAGTTTCGCGGCGAAGTGGGCGGAGTCTTAAGAGACTTGGAAGGAGTCTATAAATCAAAGTTAGAGAGAGGGAGACGCAGAGTGAGAGAGATTGATTGTGTGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAG</canonical>
            <polymorphic>CAGTGAAAATTCCAGGTTCCTAGAGACTACAAAAATCCTGAAATTCGAAATATTTGGGAAATCTTAAAAATATTAAATTAAAAAATTTTAAAATTTCAAAAAATTTTTTTTCAAAAAATTCAAAGTTTTCAGCTTTCATGTCATGGATGTGTTAGCAATCAAAATATATGAGGAAATCATGTCGAAATGGCAAAAAATCGAAATTTTCAAATAAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTGGCCTTTAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTATTGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTTTGAGAAAATGCCCTTCTAGATTAAATAGCCTTCTCATAACAAAAMTTTTCAAAACTGACCGGCTTGCTCAAGACTGATGGCCGAGGCCGTGGCCGAGACGACGATGAGGGCCAAAAGAGCCAAATAGACAGTTCGGTGAAGCATATTTGCTGCTTTCAGAGTACTTGGGAAGAACGTCAAGACTCTGTGTGGAGGAGAAATGGAATGAGAGCTCGCCGTCGAAGAAGTGGAGCTGCTCTCGAAAGTGGGCGGAGCCGAAAAGTTTCGCGGCGAAGTGGGCGGAGTCTTAAGAGACTTGGAAGGAGTCTATAAATCAAAGTTAGAGAGAGGGAGACGCAGAGTGAGAGAGATTGATTGTGTGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTATTGAACACAACGGTATTT</pcr_primer_p1>
		<pcr_primer_p2>AGCTCTCATTCCATTTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>CTCTATTGAACACAACGGTATTTTGAGAAAATGCCCTTCTAGATTAAATAGCCTTCTCATAACAAAACTTTTCAAAACTGACCGGCTTGCTCAAGACTGATGGCCGAGGCCGTGGCCGAGACGACGATGAGGGCCAAAAGAGCCAAATAGACAGTTCGGTGAAGCATATTTGCTGCTTTCAGAGTACTTGGGAAGAACGTCAAGACTCTGTGTGGAGGAGAAATGGAATGAGAGCT</canonical_amplicon>
		<polymorphic_amplicon>CTCTATTGAACACAACGGTATTTTGAGAAAATGCCCTTCTAGATTAAATAGCCTTCTCATAACAAAAMTTTTCAAAACTGACCGGCTTGCTCAAGACTGATGGCCGAGGCCGTGGCCGAGACGACGATGAGGGCCAAAAGAGCCAAATAGACAGTTCGGTGAAGCATATTTGCTGCTTTCAGAGTACTTGGGAAGAACGTCAAGACTCTGTGTGGAGGAGAAATGGAATGAGAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14334</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>110338</contig_pos>
        <strand></strand>
        <context>CCGGCTTGCT[C/G]AAGACTGATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GATTAAATAGCCTTCTCATAACAAAACTTTTCAAAACTGACCGGCTTGCT</left_flank>
        <right_flank>AAGACTGATGGCCGAGGCCGTGGCCGAGACGACGATGAGGGCCAAAAGAG</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACTACAAAAATCCTGAAATTCGAAATATTTGGGAAATCTTAAAAATATTAAATTAAAAAATTTTAAAATTTCAAAAAATTTTTTTTCAAAAAATTCAAAGTTTTCAGCTTTCATGTCATGGATGTGTTAGCAATCAAAATATATGAGGAAATCATGTCGAAATGGCAAAAAATCGAAATTTTCAAATAAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTGGCCTTTAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTATTGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTTTGAGAAAATGCCCTTCTAGATTAAATAGCCTTCTCATAACAAAACTTTTCAAAACTGACCGGCTTGCTCAAGACTGATGGCCGAGGCCGTGGCCGAGACGACGATGAGGGCCAAAAGAGCCAAATAGACAGTTCGGTGAAGCATATTTGCTGCTTTCAGAGTACTTGGGAAGAACGTCAAGACTCTGTGTGGAGGAGAAATGGAATGAGAGCTCGCCGTCGAAGAAGTGGAGCTGCTCTCGAAAGTGGGCGGAGCCGAAAAGTTTCGCGGCGAAGTGGGCGGAGTCTTAAGAGACTTGGAAGGAGTCTATAAATCAAAGTTAGAGAGAGGGAGACGCAGAGTGAGAGAGATTGATTGTGTGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGTGG</canonical>
            <polymorphic>GACTACAAAAATCCTGAAATTCGAAATATTTGGGAAATCTTAAAAATATTAAATTAAAAAATTTTAAAATTTCAAAAAATTTTTTTTCAAAAAATTCAAAGTTTTCAGCTTTCATGTCATGGATGTGTTAGCAATCAAAATATATGAGGAAATCATGTCGAAATGGCAAAAAATCGAAATTTTCAAATAAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTGGCCTTTAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTATTGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTTTGAGAAAATGCCCTTCTAGATTAAATAGCCTTCTCATAACAAAACTTTTCAAAACTGACCGGCTTGCTSAAGACTGATGGCCGAGGCCGTGGCCGAGACGACGATGAGGGCCAAAAGAGCCAAATAGACAGTTCGGTGAAGCATATTTGCTGCTTTCAGAGTACTTGGGAAGAACGTCAAGACTCTGTGTGGAGGAGAAATGGAATGAGAGCTCGCCGTCGAAGAAGTGGAGCTGCTCTCGAAAGTGGGCGGAGCCGAAAAGTTTCGCGGCGAAGTGGGCGGAGTCTTAAGAGACTTGGAAGGAGTCTATAAATCAAAGTTAGAGAGAGGGAGACGCAGAGTGAGAGAGATTGATTGTGTGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>331 271 163 109 60 53 13</canonical_bands>
                <polymorphic_bands>331 271 163 162 60 13</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>498 283 219</canonical_bands>
                <polymorphic_bands>717 283</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTATTGAACACAACGGTATTT</pcr_primer_p1>
		<pcr_primer_p2>AGCTCTCATTCCATTTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>CTCTATTGAACACAACGGTATTTTGAGAAAATGCCCTTCTAGATTAAATAGCCTTCTCATAACAAAACTTTTCAAAACTGACCGGCTTGCTCAAGACTGATGGCCGAGGCCGTGGCCGAGACGACGATGAGGGCCAAAAGAGCCAAATAGACAGTTCGGTGAAGCATATTTGCTGCTTTCAGAGTACTTGGGAAGAACGTCAAGACTCTGTGTGGAGGAGAAATGGAATGAGAGCT</canonical_amplicon>
		<polymorphic_amplicon>CTCTATTGAACACAACGGTATTTTGAGAAAATGCCCTTCTAGATTAAATAGCCTTCTCATAACAAAACTTTTCAAAACTGACCGGCTTGCTSAAGACTGATGGCCGAGGCCGTGGCCGAGACGACGATGAGGGCCAAAAGAGCCAAATAGACAGTTCGGTGAAGCATATTTGCTGCTTTCAGAGTACTTGGGAAGAACGTCAAGACTCTGTGTGGAGGAGAAATGGAATGAGAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14335</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>110408</contig_pos>
        <strand></strand>
        <context>CAGTTCGGTG[A/G]AGCATATTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGGCCGAGACGACGATGAGGGCCAAAAGAGCCAAATAGACAGTTCGGTG</left_flank>
        <right_flank>AGCATATTTGCTGCTTTCAGAGTACTTGGGAAGAACGTCAAGACTCTGTG</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAAAAAATTTTTTTTCAAAAAATTCAAAGTTTTCAGCTTTCATGTCATGGATGTGTTAGCAATCAAAATATATGAGGAAATCATGTCGAAATGGCAAAAAATCGAAATTTTCAAATAAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTGGCCTTTAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTATTGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTTTGAGAAAATGCCCTTCTAGATTAAATAGCCTTCTCATAACAAAACTTTTCAAAACTGACCGGCTTGCTCAAGACTGATGGCCGAGGCCGTGGCCGAGACGACGATGAGGGCCAAAAGAGCCAAATAGACAGTTCGGTGAAGCATATTTGCTGCTTTCAGAGTACTTGGGAAGAACGTCAAGACTCTGTGTGGAGGAGAAATGGAATGAGAGCTCGCCGTCGAAGAAGTGGAGCTGCTCTCGAAAGTGGGCGGAGCCGAAAAGTTTCGCGGCGAAGTGGGCGGAGTCTTAAGAGACTTGGAAGGAGTCTATAAATCAAAGTTAGAGAGAGGGAGACGCAGAGTGAGAGAGATTGATTGTGTGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGTGGGCGGAGCTAAGAAATCTGAGAACTGTGAATGAGTAATGAGTAATGAGCAATCAGAGACGAAACGTGGGAA</canonical>
            <polymorphic>TTCAAAAAATTTTTTTTCAAAAAATTCAAAGTTTTCAGCTTTCATGTCATGGATGTGTTAGCAATCAAAATATATGAGGAAATCATGTCGAAATGGCAAAAAATCGAAATTTTCAAATAAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTGGCCTTTAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTATTGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTTTGAGAAAATGCCCTTCTAGATTAAATAGCCTTCTCATAACAAAACTTTTCAAAACTGACCGGCTTGCTCAAGACTGATGGCCGAGGCCGTGGCCGAGACGACGATGAGGGCCAAAAGAGCCAAATAGACAGTTCGGTGRAGCATATTTGCTGCTTTCAGAGTACTTGGGAAGAACGTCAAGACTCTGTGTGGAGGAGAAATGGAATGAGAGCTCGCCGTCGAAGAAGTGGAGCTGCTCTCGAAAGTGGGCGGAGCCGAAAAGTTTCGCGGCGAAGTGGGCGGAGTCTTAAGAGACTTGGAAGGAGTCTATAAATCAAAGTTAGAGAGAGGGAGACGCAGAGTGAGAGAGATTGATTGTGTGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGTGGGCGGAGCTAAGAAATCTGAGAACTGTGAATGAGTAATGAGTAATGAGCAATCAGAGACGAAACGTGGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTATTGAACACAACGGTATTT</pcr_primer_p1>
		<pcr_primer_p2>AGCTCTCATTCCATTTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>CTCTATTGAACACAACGGTATTTTGAGAAAATGCCCTTCTAGATTAAATAGCCTTCTCATAACAAAACTTTTCAAAACTGACCGGCTTGCTCAAGACTGATGGCCGAGGCCGTGGCCGAGACGACGATGAGGGCCAAAAGAGCCAAATAGACAGTTCGGTGAAGCATATTTGCTGCTTTCAGAGTACTTGGGAAGAACGTCAAGACTCTGTGTGGAGGAGAAATGGAATGAGAGCT</canonical_amplicon>
		<polymorphic_amplicon>CTCTATTGAACACAACGGTATTTTGAGAAAATGCCCTTCTAGATTAAATAGCCTTCTCATAACAAAACTTTTCAAAACTGACCGGCTTGCTCAAGACTGATGGCCGAGGCCGTGGCCGAGACGACGATGAGGGCCAAAAGAGCCAAATAGACAGTTCGGTGRAGCATATTTGCTGCTTTCAGAGTACTTGGGAAGAACGTCAAGACTCTGTGTGGAGGAGAAATGGAATGAGAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14336</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>110510</contig_pos>
        <strand></strand>
        <context>AGCTGCTCTC[G/A]AAAGTGGGCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGAGGAGAAATGGAATGAGAGCTCGCCGTCGAAGAAGTGGAGCTGCTCTC</left_flank>
        <right_flank>AAAGTGGGCGGAGCCGAAAAGTTTCGCGGCGAAGTGGGCGGAGTCTTAAG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGAAATTTTCAAATAAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTGGCCTTTAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTATTGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTTTGAGAAAATGCCCTTCTAGATTAAATAGCCTTCTCATAACAAAACTTTTCAAAACTGACCGGCTTGCTCAAGACTGATGGCCGAGGCCGTGGCCGAGACGACGATGAGGGCCAAAAGAGCCAAATAGACAGTTCGGTGAAGCATATTTGCTGCTTTCAGAGTACTTGGGAAGAACGTCAAGACTCTGTGTGGAGGAGAAATGGAATGAGAGCTCGCCGTCGAAGAAGTGGAGCTGCTCTCGAAAGTGGGCGGAGCCGAAAAGTTTCGCGGCGAAGTGGGCGGAGTCTTAAGAGACTTGGAAGGAGTCTATAAATCAAAGTTAGAGAGAGGGAGACGCAGAGTGAGAGAGATTGATTGTGTGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGTGGGCGGAGCTAAGAAATCTGAGAACTGTGAATGAGTAATGAGTAATGAGCAATCAGAGACGAAACGTGGGAAAAATGAGAATTTGGAATTCTAGACAGAGATTCTAGAATACAAGGAAATCAGAAGAAAAAATGTTTTTGGGTACAAAATTTTTTTGGAGTTTCTAGAAGATTC</canonical>
            <polymorphic>ATCGAAATTTTCAAATAAAAAATTGTTTTCAAAAAATTCAAAAATTCGATTTTTCTGTAATTTTTCAGTCTTTTGTACTCAAAATGTGTGTTTTGGCCTTTAAATCATTTTCTAGACAAGAAAATCATGTCAAAATGGCAAAAAAAATCGATAAAAACCTGATTTTTCCAAGCAATACTATTGGCGCCGCGCGCAACCGCGCCCTGCTGACAATACAGCGAATTTCGGCAAGAGCGCTCTATTGAACACAACGGTATTTTGAGAAAATGCCCTTCTAGATTAAATAGCCTTCTCATAACAAAACTTTTCAAAACTGACCGGCTTGCTCAAGACTGATGGCCGAGGCCGTGGCCGAGACGACGATGAGGGCCAAAAGAGCCAAATAGACAGTTCGGTGAAGCATATTTGCTGCTTTCAGAGTACTTGGGAAGAACGTCAAGACTCTGTGTGGAGGAGAAATGGAATGAGAGCTCGCCGTCGAAGAAGTGGAGCTGCTCTCRAAAGTGGGCGGAGCCGAAAAGTTTCGCGGCGAAGTGGGCGGAGTCTTAAGAGACTTGGAAGGAGTCTATAAATCAAAGTTAGAGAGAGGGAGACGCAGAGTGAGAGAGATTGATTGTGTGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGTGGGCGGAGCTAAGAAATCTGAGAACTGTGAATGAGTAATGAGTAATGAGCAATCAGAGACGAAACGTGGGAAAAATGAGAATTTGGAATTCTAGACAGAGATTCTAGAATACAAGGAAATCAGAAGAAAAAATGTTTTTGGGTACAAAATTTTTTTGGAGTTTCTAGAAGATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 330 102 44 20 3</canonical_bands>
                <polymorphic_bands>521 330 102 44 3</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>420 163 112 109 60 60 53 13 10</canonical_bands>
                <polymorphic_bands>480 163 112 109 60 53 13 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGAGCCAAATAGACAGTT</pcr_primer_p1>
		<pcr_primer_p2>TTGATTTATAGACTCCTTCCAAGT</pcr_primer_p2>
		<pcr_amplicon_size>206</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGAGCCAAATAGACAGTTCGGTGAAGCATATTTGCTGCTTTCAGAGTACTTGGGAAGAACGTCAAGACTCTGTGTGGAGGAGAAATGGAATGAGAGCTCGCCGTCGAAGAAGTGGAGCTGCTCTCGAAAGTGGGCGGAGCCGAAAAGTTTCGCGGCGAAGTGGGCGGAGTCTTAAGAGACTTGGAAGGAGTCTATAAATCAA</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGAGCCAAATAGACAGTTCGGTGAAGCATATTTGCTGCTTTCAGAGTACTTGGGAAGAACGTCAAGACTCTGTGTGGAGGAGAAATGGAATGAGAGCTCGCCGTCGAAGAAGTGGAGCTGCTCTCRAAAGTGGGCGGAGCCGAAAAGTTTCGCGGCGAAGTGGGCGGAGTCTTAAGAGACTTGGAAGGAGTCTATAAATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14337</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>111710</contig_pos>
        <strand>+</strand>
        <context>TCTGCGAATT[C/T]CAACAAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTCAAAGTGGTTTCTTCTCCATTCTGAAAAATCCAATTTTCTGCGAATT</left_flank>
        <right_flank>CAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCCGAATTTCTGAATTTATGAATTTCTGAATTTCTGAATTTCTTAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTACTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAAATTTCTCGAAATTTAGAGTTCTCGAAAATTCTAAATTTTTGAAATTTCTAAATTTTTGAAAATTTTAATTTTCAAACCTCAAAGTGGTTTCTTCTCCATTCTGAAAAATCCAATTTTCTGCGAATTTCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTACTAAACGCTACACAATTCTCCATTCTGATACATTTTCTCCGTTCTGATACATTTCAAATTCTGATACATTTTCATCATATATTTCCCTGGAAAAACCAATTTTCTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATTTTTTTTAAGTTTTGTTTTTGTGTTTTCATTAGTTTTCATTAGTTTTCAGGGAGTTTTTCGATGGTTTAAGCCTTTTTTGGAAAAGTAGTTTACATGAACCAAAAAATGGGTCAACCTATGTCATTC</canonical>
            <polymorphic>CTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCCGAATTTCTGAATTTATGAATTTCTGAATTTCTGAATTTCTTAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTACTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAAATTTCTCGAAATTTAGAGTTCTCGAAAATTCTAAATTTTTGAAATTTCTAAATTTTTGAAAATTTTAATTTTCAAACCTCAAAGTGGTTTCTTCTCCATTCTGAAAAATCCAATTTTCTGCGAATTYCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTACTAAACGCTACACAATTCTCCATTCTGATACATTTTCTCCGTTCTGATACATTTCAAATTCTGATACATTTTCATCATATATTTCCCTGGAAAAACCAATTTTCTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATTTTTTTTAAGTTTTGTTTTTGTGTTTTCATTAGTTTTCATTAGTTTTCAGGGAGTTTTTCGATGGTTTAAGCCTTTTTTGGAAAAGTAGTTTACATGAACCAAAAAATGGGTCAACCTATGTCATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>393 80 62 32 17 16 16 16 10 10 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 3</canonical_bands>
                <polymorphic_bands>393 94 80 17 16 16 16 10 10 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTAGTTGGACTTTTTGACCT</pcr_primer_p1>
		<pcr_primer_p2>GTAGCGTTTAGTACCCAGACAG</pcr_primer_p2>
		<pcr_amplicon_size>753</pcr_amplicon_size>
		<canonical_amplicon>TTCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTACTAAACGCTAC</canonical_amplicon>
		<polymorphic_amplicon>TYCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTACTAAACGCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14338</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>111686</contig_pos>
        <strand>+</strand>
        <context>TCTCCATTCT[G/T]AAAAATCCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTTGAAAATTTTAATTTTCAAACCTCAAAGTGGTTTCTTCTCCATTCT</left_flank>
        <right_flank>AAAAATCCAATTTTCTGCGAATTTCAACAAAAAAGAAATGTCTAGAATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCCGAATTTCTGAATTTATGAATTTCTGAATTTCTGAATTTCTTAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTACTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAAATTTCTCGAAATTTAGAGTTCTCGAAAATTCTAAATTTTTGAAATTTCTAAATTTTTGAAAATTTTAATTTTCAAACCTCAAAGTGGTTTCTTCTCCATTCTGAAAAATCCAATTTTCTGCGAATTTCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTACTAAACGCTACACAATTCTCCATTCTGATACATTTTCTCCGTTCTGATACATTTCAAATTCTGATACATTTTCATCATATATTTCCCTGGAAAAACCAATTTTCTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATTTTTTTTAAGTTTTGTTTTTGTGTTTTCATTAGTTTTCATTAGTTTTCAGGGAGTTTTTCGATGGTTTAAGCCTTTTTTGGAAAAGTAGTTTACATGAACCAA</canonical>
            <polymorphic>CTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCCGAATTTCTGAATTTATGAATTTCTGAATTTCTGAATTTCTTAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTACTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAAATTTCTCGAAATTTAGAGTTCTCGAAAATTCTAAATTTTTGAAATTTCTAAATTTTTGAAAATTTTAATTTTCAAACCTCAAAGTGGTTTCTTCTCCATTCTKAAAAATCCAATTTTCTGCGAATTTCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTACTAAACGCTACACAATTCTCCATTCTGATACATTTTCTCCGTTCTGATACATTTCAAATTCTGATACATTTTCATCATATATTTCCCTGGAAAAACCAATTTTCTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATTTTTTTTAAGTTTTGTTTTTGTGTTTTCATTAGTTTTCATTAGTTTTCAGGGAGTTTTTCGATGGTTTAAGCCTTTTTTGGAAAAGTAGTTTACATGAACCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>363 105 102 19 17 16 16 16 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>363 207 19 17 16 16 16 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGATTTAGTTGGACTTTTTGA</pcr_primer_p1>
		<pcr_primer_p2>GTACCCAGACAGAGGTATAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>746</pcr_amplicon_size>
		<canonical_amplicon>TGAAAAATCCAATTTTCTGCGAATTTCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTAC</canonical_amplicon>
		<polymorphic_amplicon>TKAAAAATCCAATTTTCTGCGAATTTCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14341</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>111837</contig_pos>
        <strand>+</strand>
        <context>ACATTTTCAT[A/C]ATATATTTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGATACATTTTCTCCGTTCTGATACATTTCAAATTCTGATACATTTTCAT</left_flank>
        <right_flank>ATATATTTCCCTGGAAAAACCAATTTTCTCTCTTTTGAATGAGACAATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTACTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAAATTTCTCGAAATTTAGAGTTCTCGAAAATTCTAAATTTTTGAAATTTCTAAATTTTTGAAAATTTTAATTTTCAAACCTCAAAGTGGTTTCTTCTCCATTCTGAAAAATCCAATTTTCTGCGAATTTCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTACTAAACGCTACACAATTCTCCATTCTGATACATTTTCTCCGTTCTGATACATTTCAAATTCTGATACATTTTCATCATATATTTCCCTGGAAAAACCAATTTTCTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATTTTTTTTAAGTTTTGTTTTTGTGTTTTCATTAGTTTTCATTAGTTTTCAGGGAGTTTTTCGATGGTTTAAGCCTTTTTTGGAAAAGTAGTTTACATGAACCAAAAAATGGGTCAACCTATGTCATTCAGATGACGTCAATCAACGACATTTGATATATCGAAAAAAAAGGAAAAATATTAATAAGAGCAAAAAATACCAATATTAGCAAAAAGGTTTTAGGAAGAGATTATGAAAAAATTTGATAAGATCAGAT</canonical>
            <polymorphic>TCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTACTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAAATTTCTCGAAATTTAGAGTTCTCGAAAATTCTAAATTTTTGAAATTTCTAAATTTTTGAAAATTTTAATTTTCAAACCTCAAAGTGGTTTCTTCTCCATTCTGAAAAATCCAATTTTCTGCGAATTTCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTACTAAACGCTACACAATTCTCCATTCTGATACATTTTCTCCGTTCTGATACATTTCAAATTCTGATACATTTTCATMATATATTTCCCTGGAAAAACCAATTTTCTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATTTTTTTTAAGTTTTGTTTTTGTGTTTTCATTAGTTTTCATTAGTTTTCAGGGAGTTTTTCGATGGTTTAAGCCTTTTTTGGAAAAGTAGTTTACATGAACCAAAAAATGGGTCAACCTATGTCATTCAGATGACGTCAATCAACGACATTTGATATATCGAAAAAAAAGGAAAAATATTAATAAGAGCAAAAAATACCAATATTAGCAAAAAGGTTTTAGGAAGAGATTATGAAAAAATTTGATAAGATCAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGATACATTTTCTCCGTTCT</pcr_primer_p1>
		<pcr_primer_p2>ACGCTCTACCAACTGAGCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTGATACATTTTCTCCGTTCTGATACATTTCAAATTCTGATACATTTTCATCATATATTTCCCTGGAAAAACCAATTTTCTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGT</canonical_amplicon>
		<polymorphic_amplicon>TCTGATACATTTTCTCCGTTCTGATACATTTCAAATTCTGATACATTTTCATMATATATTTCCCTGGAAAAACCAATTTTCTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14342</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>112144</contig_pos>
        <strand>+</strand>
        <context>GGAGTTTTMC[A/G]ATGGTTTAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGTTTTTGTGTTTTCATTAGTTTTCATTAGTTTTCAGGGAGTTTTTC</left_flank>
        <right_flank>ATGGTTTAAGCCTTTTTTGGAAAAGTAGTTTACATGAACCAAAAAATGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTAATTTTCAAACCTCAAAGTGGTTTCTTCTCCATTCTGAAAAATCCAATTTTCTGCGAATTTCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTACTAAACGCTACACAATTCTCCATTCTGATACATTTTCTCCGTTCTGATACATTTCAAATTCTGATACATTTTCATCATATATTTCCCTGGAAAAACCAATTTTCTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATTTTTTTTAAGTTTTGTTTTTGTGTTTTCATTAGTTTTCATTAGTTTTCAGGGAGTTTTTCGATGGTTTAAGCCTTTTTTGGAAAAGTAGTTTACATGAACCAAAAAATGGGTCAACCTATGTCATTCAGATGACGTCAATCAACGACATTTGATATATCGAAAAAAAAGGAAAAATATTAATAAGAGCAAAAAATACCAATATTAGCAAAAAGGTTTTAGGAAGAGATTATGAAAAAATTTGATAAGATCAGATGAGGATTTGCAAACAATGCAACAAGTTATGTACCACCTTCNNNNNNNNNNTTTCGTTTTCTGTTGAGCTAAGGAGGCCCCGAAGGAGAAAGGGAGGGAGGTCGTACAGGAAAGGGGGCACGGTGGGAGTCGAGGAGGAGGAGAGGTCACTGGGGGAAAATTTGGAGAATTTCGGGGTAATAGGAAATGTTCTAAAAAATTAGAAAAATGGGTTTCGGTACTTAAAAATTCAAATTTTCAAAGGGATTACAATAGTTTTTATTTAGGGTACAAGAGAACAAAAATAAAAATAAAAAAACAAATTTTTT</canonical>
            <polymorphic>ATTTTAATTTTCAAACCTCAAAGTGGTTTCTTCTCCATTCTGAAAAATCCAATTTTCTGCGAATTTCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTACTAAACGCTACACAATTCTCCATTCTGATACATTTTCTCCGTTCTGATACATTTCAAATTCTGATACATTTTCATCATATATTTCCCTGGAAAAACCAATTTTCTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATTTTTTTTAAGTTTTGTTTTTGTGTTTTCATTAGTTTTCATTAGTTTTCAGGGAGTTTTTCRATGGTTTAAGCCTTTTTTGGAAAAGTAGTTTACATGAACCAAAAAATGGGTCAACCTATGTCATTCAGATGACGTCAATCAACGACATTTGATATATCGAAAAAAAAGGAAAAATATTAATAAGAGCAAAAAATACCAATATTAGCAAAAAGGTTTTAGGAAGAGATTATGAAAAAATTTGATAAGATCAGATGAGGATTTGCAAACAATGCAACAAGTTATGTACCACCTTCNNNNNNNNNNTTTCGTTTTCTGTTGAGCTAAGGAGGCCCCGAAGGAGAAAGGGAGGGAGGTCGTACAGGAAAGGGGGCACGGTGGGAGTCGAGGAGGAGGAGAGGTCACTGGGGGAAAATTTGGAGAATTTCGGGGTAATAGGAAATGTTCTAAAAAATTAGAAAAATGGGTTTCGGTACTTAAAAATTCAAATTTTCAAAGGGATTACAATAGTTTTTATTTAGGGTACAAGAGAACAAAAATAAAAATAAAAAAACAAATTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>418 225 177 99 81</canonical_bands>
                <polymorphic_bands>418 225 180 177</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTTTGTTTTTGTGTTTTCATT</pcr_primer_p1>
		<pcr_primer_p2>AAATCCTCATCTGATCTTATCAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AGTTTTGTTTTTGTGTTTTCATTAGTTTTCATTAGTTTTCAGGGAGTTTTTCGATGGTTTAAGCCTTTTTTGGAAAAGTAGTTTACATGAACCAAAAAATGGGTCAACCTATGTCATTCAGATGACGTCAATCAACGACATTTGATATATCGAAAAAAAAGGAAAAATATTAATAAGAGCAAAAAATACCAATATTAGCAAAAAGGTTTTAGGAAGAGATTATGAAAAAATTTGATAAGATCAGATGAGGATTT</canonical_amplicon>
		<polymorphic_amplicon>AGTTTTGTTTTTGTGTTTTCATTAGTTTTCATTAGTTTTCAGGGAGTTTTTCRATGGTTTAAGCCTTTTTTGGAAAAGTAGTTTACATGAACCAAAAAATGGGTCAACCTATGTCATTCAGATGACGTCAATCAACGACATTTGATATATCGAAAAAAAAGGAAAAATATTAATAAGAGCAAAAAATACCAATATTAGCAAAAAGGTTTTAGGAAGAGATTATGAAAAAATTTGATAAGATCAGATGAGGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14347</snp_id>
        <super_contig>c008000613.Contig3</super_contig>
        <contig_pos>7006</contig_pos>
        <strand>+</strand>
        <context>CCCTCATTTC[A/T]CTTTCACGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGCGTAATCGAGTCTCTTCAATGCCTGTACATACATATTCCCTCATTTC</left_flank>
        <right_flank>CTTTCACGACGACTTACTGAATAGACGTCCAAATATTCCCGAGAACTCTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGTTTCTTAATTTATAAATTGCAACGTTTCCAAACTTGGAAATTTTCAAATTTTTACTTTAACAGCCATCTGCTTGTAGTTTTGGCCATTATACGATCCGACAAAAGCGTATTTTTTCAATTTTCTTCAAATTCGAGAAACTTTTTCTCCTTGATTGAATATGAGAACAAAAAGGAGGAAAGTCTTTCTGGATGCATTTTTGAAAGTACTAGTCAGATGCGGACGGGAAAAGACGATCTCTGTTTTAGGATAATTTCTAGGCCACCGTCACGTAGAAGTCGTCCTCGGTGACGTTGTCCTTTTGTATATTTCTGCCACATATTAGTGTGGCAAACCAAAAGAAAACATTGGAAAAGCTGTTTTCCGGAGACTGTGCTATTCAAGAGACGCAGAGAAAACCGACCGTGATGTTAGAGAATACATGGAATGACGGAGATGCAGAGAAACGTTGCGTAATCGAGTCTCTTCAATGCCTGTACATACATATTCCCTCATTTCACTTTCACGACGACTTACTGAATAGACGTCCAAATATTCCCGAGAACTCTCCAAAAACCTTTCACATGAATGGATTCTGGAGGGTTTTCTCTTATTTTCCTGACTATATCTAATTCCACTACTATTTATTCTTCAAGAAACTTTATAAATGAATGGAATGTTTCTTCTATTATTGATTTTTTTCTAAAAGCAAAATGATGAGCTGGAAAAGTGAGTTTTTATTCATTTAATTTAAAAAAACCACCTTTTTTCTAGTTTTTCAAAAAAATCTCTTTCTTTAATTCAAATTTTCTCAAATAATTATATTTCATTCAAATTAAAATTTTCTAGGTCGTCGAACGACATCGTCGAAATTGGACACGTCTCAATGAGCAAGAAAGAAGGCTGAATGAGAATTTGGTGAGATTTTTCATTCAAATATTTTTTTTAGTGTGCGATCCGCCATTCTAAACCTTTGCATTGTCGGCCGGGTGGTGCCCGGGAAGTGGTGGGCGTTTAACC</canonical>
            <polymorphic>GAGTTTCTTAATTTATAAATTGCAACGTTTCCAAACTTGGAAATTTTCAAATTTTTACTTTAACAGCCATCTGCTTGTAGTTTTGGCCATTATACGATCCGACAAAAGCGTATTTTTTCAATTTTCTTCAAATTCGAGAAACTTTTTCTCCTTGATTGAATATGAGAACAAAAAGGAGGAAAGTCTTTCTGGATGCATTTTTGAAAGTACTAGTCAGATGCGGACGGGAAAAGACGATCTCTGTTTTAGGATAATTTCTAGGCCACCGTCACGTAGAAGTCGTCCTCGGTGACGTTGTCCTTTTGTATATTTCTGCCACATATTAGTGTGGCAAACCAAAAGAAAACATTGGAAAAGCTGTTTTCCGGAGACTGTGCTATTCAAGAGACGCAGAGAAAACCGACCGTGATGTTAGAGAATACATGGAATGACGGAGATGCAGAGAAACGTTGCGTAATCGAGTCTCTTCAATGCCTGTACATACATATTCCCTCATTTCWCTTTCACGACGACTTACTGAATAGACGTCCAAATATTCCCGAGAACTCTCCAAAAACCTTTCACATGAATGGATTCTGGAGGGTTTTCTCTTATTTTCCTGACTATATCTAATTCCACTACTATTTATTCTTCAAGAAACTTTATAAATGAATGGAATGTTTCTTCTATTATTGATTTTTTTCTAAAAGCAAAATGATGAGCTGGAAAAGTGAGTTTTTATTCATTTAATTTAAAAAAACCACCTTTTTTCTAGTTTTTCAAAAAAATCTCTTTCTTTAATTCAAATTTTCTCAAATAATTATATTTCATTCAAATTAAAATTTTCTAGGTCGTCGAACGACATCGTCGAAATTGGACACGTCTCAATGAGCAAGAAAGAAGGCTGAATGAGAATTTGGTGAGATTTTTCATTCAAATATTTTTTTTAGTGTGCGATCCGCCATTCTAAACCTTTGCATTGTCGGCCGGGTGGTGCCCGGGAAGTGGTGGGCGTTTAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>265 117 95 92 57 54 46 42 39 32 30 30 27 20 11 11 10 6 6 3 3 2 2</canonical_bands>
                <polymorphic_bands>265 117 98 95 57 54 46 42 39 32 30 30 27 20 11 11 10 6 3 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATGTTAGAGAATACATGGAATGA</pcr_primer_p1>
		<pcr_primer_p2>TCCATTCATTTATAAAGTTTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATGTTAGAGAATACATGGAATGACGGAGATGCAGAGAAACGTTGCGTAATCGAGTCTCTTCAATGCCTGTACATACATATTCCCTCATTTCACTTTCACGACGACTTACTGAATAGACGTCCAAATATTCCCGAGAACTCTCCAAAAACCTTTCACATGAATGGATTCTGGAGGGTTTTCTCTTATTTTCCTGACTATATCTAATTCCACTACTATTTATTCTTCAAGAAACTTTATAAATGAATGGA</canonical_amplicon>
		<polymorphic_amplicon>GATGTTAGAGAATACATGGAATGACGGAGATGCAGAGAAACGTTGCGTAATCGAGTCTCTTCAATGCCTGTACATACATATTCCCTCATTTCWCTTTCACGACGACTTACTGAATAGACGTCCAAATATTCCCGAGAACTCTCCAAAAACCTTTCACATGAATGGATTCTGGAGGGTTTTCTCTTATTTTCCTGACTATATCTAATTCCACTACTATTTATTCTTCAAGAAACTTTATAAATGAATGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14348</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>56058</contig_pos>
        <strand>+</strand>
        <context>GATACGTTGA[A/C]CCTTAGYAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCCATTTTCTGCATTTTTTGTGACTCTGATGTTGAATCAGATACGTTGA</left_flank>
        <right_flank>CCTTAGAAAAAAAATAGCGGAATTTTCAATTTTCGAAATCTACAGTGATC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATAGAAAATGTTGCATATTTAGGGGATAGAGGGTCCTTTCGTGCCTTCCCCCCATCATCGACCGGACCAATAAACCTTAGCATGTACCCCCTCGGGTCATGTGTCCTATTTTTTGTGTTTAGAAGATGTACGCGTCAATTTTAGTACAGTAGGAAACAAAACGTTTCTCTTTTCGTTGATTTTTCTTCAATTTTTCATAGTTCAGAAATGGTAGTTTTCAAAACAGGAGTTCGTGATTTCAGAAAACTCTGGATTTTTCAAAAGAAATCCAGTAATTTAATAGAAATTTCAAAATTCAAAATAATAAAAAACTTAGCTATGGAATTTTTAAAATCTACAGTAATCGGATCATTTTATGTTATGTCCTAGAAATGTACTGTTATACATTTAAATAAATACAAAAAAACAGGAAAATCGATTTTCTATTGAAAAATGTTTCTGAATTTTCCCATTTTCTGCATTTTTTGTGACTCTGATGTTGAATCAGATACGTTGACCCTTAGAAAAAAAATAGCGGAATTTTCAATTTTCGAAATCTACAGTGATCAATAATGAATTCCTGGCAATCTCTGAAATTGAAAATCTAGTTTTTTTTCGATTTTCGGAATATCCCTGCTCCATTTTTTCCTCTAAATGCCGATTCTGTATAGGCAATTATCCTTTTTCTTGGCTTTTTTATGACCACTACCATTTAAAAAGCCCTCATCACATTTCCTCCCACAAAAACGACCCAAATTTCTGTTTGCTGAGATCCGCCTTCATTTTCAAATGAGCTTCTCACGCTACAGTAAACCAGTTGAACAGCTGCTTCTTTCCAATTGACATCTTGTCATTTTTCTATGGGATTCTATAGGTCTCCTCGTTCTTCTTCGTAGGAAAATTCTGGAAAATTTAAATTCCTCACAAATATCATTCATTTGTTGTTGTTTTTGACTCCTTGATTCAAATAAGACGGATGAGAAGCGGATGGTCATTATTAGCCAGCCCCAGGAAGACG</canonical>
            <polymorphic>AAAATAGAAAATGTTGCATATTTAGGGGATAGAGGGTCCTTTCGTGCCTTCCCCCCATCATCGACCGGACCAATAAACCTTAGCATGTACCCCCTCGGGTCATGTGTCCTATTTTTTGTGTTTAGAAGATGTACGCGTCAATTTTAGTACAGTAGGAAACAAAACGTTTCTCTTTTCGTTGATTTTTCTTCAATTTTTCATAGTTCAGAAATGGTAGTTTTCAAAACAGGAGTTCGTGATTTCAGAAAACTCTGGATTTTTCAAAAGAAATCCAGTAATTTAATAGAAATTTCAAAATTCAAAATAATAAAAAACTTAGCTATGGAATTTTTAAAATCTACAGTAATCGGATCATTTTATGTTATGTCCTAGAAATGTACTGTTATACATTTAAATAAATACAAAAAAACAGGAAAATCGATTTTCTATTGAAAAATGTTTCTGAATTTTCCCATTTTCTGCATTTTTTGTGACTCTGATGTTGAATCAGATACGTTGAMCCTTAGAAAAAAAATAGCGGAATTTTCAATTTTCGAAATCTACAGTGATCAATAATGAATTCCTGGCAATCTCTGAAATTGAAAATCTAGTTTTTTTTCGATTTTCGGAATATCCCTGCTCCATTTTTTCCTCTAAATGCCGATTCTGTATAGGCAATTATCCTTTTTCTTGGCTTTTTTATGACCACTACCATTTAAAAAGCCCTCATCACATTTCCTCCCACAAAAACGACCCAAATTTCTGTTTGCTGAGATCCGCCTTCATTTTCAAATGAGCTTCTCACGCTACAGTAAACCAGTTGAACAGCTGCTTCTTTCCAATTGACATCTTGTCATTTTTCTATGGGATTCTATAGGTCTCCTCGTTCTTCTTCGTAGGAAAATTCTGGAAAATTTAAATTCCTCACAAATATCATTCATTTGTTGTTGTTTTTGACTCCTTGATTCAAATAAGACGGATGAGAAGCGGATGGTCATTATTAGCCAGCCCCAGGAAGACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>497 296 207</canonical_bands>
                <polymorphic_bands>793 207</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCGGATCATTTTATGTTATGTC</pcr_primer_p1>
		<pcr_primer_p2>AAAACTAGATTTTCAATTTCAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCGGATCATTTTATGTTATGTCCTAGAAATGTACTGTTATACATTTAAATAAATACAAAAAAACAGGAAAATCGATTTTCTATTGAAAAATGTTTCTGAATTTTCCCATTTTCTGCATTTTTTGTGACTCTGATGTTGAATCAGATACGTTGACCCTTAGAAAAAAAATAGCGGAATTTTCAATTTTCGAAATCTACAGTGATCAATAATGAATTCCTGGCAATCTCTGAAATTGAAAATCTAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATCGGATCATTTTATGTTATGTCCTAGAAATGTACTGTTATACATTTAAATAAATACAAAAAAACAGGAAAATCGATTTTCTATTGAAAAATGTTTCTGAATTTTCCCATTTTCTGCATTTTTTGTGACTCTGATGTTGAATCAGATACGTTGAMCCTTAGAAAAAAAATAGCGGAATTTTCAATTTTCGAAATCTACAGTGATCAATAATGAATTCCTGGCAATCTCTGAAATTGAAAATCTAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14349</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>56078</contig_pos>
        <strand></strand>
        <context>AAAAATAGCG[G/A]AATTTTCAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTGACTCTGATGTTGAATCAGATACGTTGACCCTTAGAAAAAAAATAGCG</left_flank>
        <right_flank>AATTTTCAATTTTCGAAATCTACAGTGATCAATAATGAATTCCTGGCAAT</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAGGGGATAGAGGGTCCTTTCGTGCCTTCCCCCCATCATCGACCGGACCAATAAACCTTAGCATGTACCCCCTCGGGTCATGTGTCCTATTTTTTGTGTTTAGAAGATGTACGCGTCAATTTTAGTACAGTAGGAAACAAAACGTTTCTCTTTTCGTTGATTTTTCTTCAATTTTTCATAGTTCAGAAATGGTAGTTTTCAAAACAGGAGTTCGTGATTTCAGAAAACTCTGGATTTTTCAAAAGAAATCCAGTAATTTAATAGAAATTTCAAAATTCAAAATAATAAAAAACTTAGCTATGGAATTTTTAAAATCTACAGTAATCGGATCATTTTATGTTATGTCCTAGAAATGTACTGTTATACATTTAAATAAATACAAAAAAACAGGAAAATCGATTTTCTATTGAAAAATGTTTCTGAATTTTCCCATTTTCTGCATTTTTTGTGACTCTGATGTTGAATCAGATACGTTGACCCTTAGAAAAAAAATAGCGGAATTTTCAATTTTCGAAATCTACAGTGATCAATAATGAATTCCTGGCAATCTCTGAAATTGAAAATCTAGTTTTTTTTCGATTTTCGGAATATCCCTGCTCCATTTTTTCCTCTAAATGCCGATTCTGTATAGGCAATTATCCTTTTTCTTGGCTTTTTTATGACCACTACCATTTAAAAAGCCCTCATCACATTTCCTCCCACAAAAACGACCCAAATTTCTGTTTGCTGAGATCCGCCTTCATTTTCAAATGAGCTTCTCACGCTACAGTAAACCAGTTGAACAGCTGCTTCTTTCCAATTGACATCTTGTCATTTTTCTATGGGATTCTATAGGTCTCCTCGTTCTTCTTCGTAGGAAAATTCTGGAAAATTTAAATTCCTCACAAATATCATTCATTTGTTGTTGTTTTTGACTCCTTGATTCAAATAAGACGGATGAGAAGCGGATGGTCATTATTAGCCAGCCCCAGGAAGACGGATATATAGTTTCCGTTCTG</canonical>
            <polymorphic>TTTAGGGGATAGAGGGTCCTTTCGTGCCTTCCCCCCATCATCGACCGGACCAATAAACCTTAGCATGTACCCCCTCGGGTCATGTGTCCTATTTTTTGTGTTTAGAAGATGTACGCGTCAATTTTAGTACAGTAGGAAACAAAACGTTTCTCTTTTCGTTGATTTTTCTTCAATTTTTCATAGTTCAGAAATGGTAGTTTTCAAAACAGGAGTTCGTGATTTCAGAAAACTCTGGATTTTTCAAAAGAAATCCAGTAATTTAATAGAAATTTCAAAATTCAAAATAATAAAAAACTTAGCTATGGAATTTTTAAAATCTACAGTAATCGGATCATTTTATGTTATGTCCTAGAAATGTACTGTTATACATTTAAATAAATACAAAAAAACAGGAAAATCGATTTTCTATTGAAAAATGTTTCTGAATTTTCCCATTTTCTGCATTTTTTGTGACTCTGATGTTGAATCAGATACGTTGACCCTTAGAAAAAAAATAGCGRAATTTTCAATTTTCGAAATCTACAGTGATCAATAATGAATTCCTGGCAATCTCTGAAATTGAAAATCTAGTTTTTTTTCGATTTTCGGAATATCCCTGCTCCATTTTTTCCTCTAAATGCCGATTCTGTATAGGCAATTATCCTTTTTCTTGGCTTTTTTATGACCACTACCATTTAAAAAGCCCTCATCACATTTCCTCCCACAAAAACGACCCAAATTTCTGTTTGCTGAGATCCGCCTTCATTTTCAAATGAGCTTCTCACGCTACAGTAAACCAGTTGAACAGCTGCTTCTTTCCAATTGACATCTTGTCATTTTTCTATGGGATTCTATAGGTCTCCTCGTTCTTCTTCGTAGGAAAATTCTGGAAAATTTAAATTCCTCACAAATATCATTCATTTGTTGTTGTTTTTGACTCCTTGATTCAAATAAGACGGATGAGAAGCGGATGGTCATTATTAGCCAGCCCCAGGAAGACGGATATATAGTTTCCGTTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>267 179 145 123 119 76 37 30 10 8 6</canonical_bands>
                <polymorphic_bands>267 179 145 123 119 113 30 10 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCGGATCATTTTATGTTATGTC</pcr_primer_p1>
		<pcr_primer_p2>AAAACTAGATTTTCAATTTCAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCGGATCATTTTATGTTATGTCCTAGAAATGTACTGTTATACATTTAAATAAATACAAAAAAACAGGAAAATCGATTTTCTATTGAAAAATGTTTCTGAATTTTCCCATTTTCTGCATTTTTTGTGACTCTGATGTTGAATCAGATACGTTGACCCTTAGAAAAAAAATAGCGGAATTTTCAATTTTCGAAATCTACAGTGATCAATAATGAATTCCTGGCAATCTCTGAAATTGAAAATCTAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATCGGATCATTTTATGTTATGTCCTAGAAATGTACTGTTATACATTTAAATAAATACAAAAAAACAGGAAAATCGATTTTCTATTGAAAAATGTTTCTGAATTTTCCCATTTTCTGCATTTTTTGTGACTCTGATGTTGAATCAGATACGTTGACCCTTAGAAAAAAAATAGCGRAATTTTCAATTTTCGAAATCTACAGTGATCAATAATGAATTCCTGGCAATCTCTGAAATTGAAAATCTAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14350</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>56098</contig_pos>
        <strand></strand>
        <context>TTTTCGAAAT[C/T]TACAGTGATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATACGTTGACCCTTAGAAAAAAAATAGCGGAATTTTCAATTTTCGAAAT</left_flank>
        <right_flank>TACAGTGATCAATAATGAATTCCTGGCAATCTCTGAAATTGAAAATCTAG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGTGCCTTCCCCCCATCATCGACCGGACCAATAAACCTTAGCATGTACCCCCTCGGGTCATGTGTCCTATTTTTTGTGTTTAGAAGATGTACGCGTCAATTTTAGTACAGTAGGAAACAAAACGTTTCTCTTTTCGTTGATTTTTCTTCAATTTTTCATAGTTCAGAAATGGTAGTTTTCAAAACAGGAGTTCGTGATTTCAGAAAACTCTGGATTTTTCAAAAGAAATCCAGTAATTTAATAGAAATTTCAAAATTCAAAATAATAAAAAACTTAGCTATGGAATTTTTAAAATCTACAGTAATCGGATCATTTTATGTTATGTCCTAGAAATGTACTGTTATACATTTAAATAAATACAAAAAAACAGGAAAATCGATTTTCTATTGAAAAATGTTTCTGAATTTTCCCATTTTCTGCATTTTTTGTGACTCTGATGTTGAATCAGATACGTTGACCCTTAGAAAAAAAATAGCGGAATTTTCAATTTTCGAAATCTACAGTGATCAATAATGAATTCCTGGCAATCTCTGAAATTGAAAATCTAGTTTTTTTTCGATTTTCGGAATATCCCTGCTCCATTTTTTCCTCTAAATGCCGATTCTGTATAGGCAATTATCCTTTTTCTTGGCTTTTTTATGACCACTACCATTTAAAAAGCCCTCATCACATTTCCTCCCACAAAAACGACCCAAATTTCTGTTTGCTGAGATCCGCCTTCATTTTCAAATGAGCTTCTCACGCTACAGTAAACCAGTTGAACAGCTGCTTCTTTCCAATTGACATCTTGTCATTTTTCTATGGGATTCTATAGGTCTCCTCGTTCTTCTTCGTAGGAAAATTCTGGAAAATTTAAATTCCTCACAAATATCATTCATTTGTTGTTGTTTTTGACTCCTTGATTCAAATAAGACGGATGAGAAGCGGATGGTCATTATTAGCCAGCCCCAGGAAGACGGATATATAGTTTCCGTTCTGCTCTCATGGTCATCGCAAAA</canonical>
            <polymorphic>TTCGTGCCTTCCCCCCATCATCGACCGGACCAATAAACCTTAGCATGTACCCCCTCGGGTCATGTGTCCTATTTTTTGTGTTTAGAAGATGTACGCGTCAATTTTAGTACAGTAGGAAACAAAACGTTTCTCTTTTCGTTGATTTTTCTTCAATTTTTCATAGTTCAGAAATGGTAGTTTTCAAAACAGGAGTTCGTGATTTCAGAAAACTCTGGATTTTTCAAAAGAAATCCAGTAATTTAATAGAAATTTCAAAATTCAAAATAATAAAAAACTTAGCTATGGAATTTTTAAAATCTACAGTAATCGGATCATTTTATGTTATGTCCTAGAAATGTACTGTTATACATTTAAATAAATACAAAAAAACAGGAAAATCGATTTTCTATTGAAAAATGTTTCTGAATTTTCCCATTTTCTGCATTTTTTGTGACTCTGATGTTGAATCAGATACGTTGACCCTTAGAAAAAAAATAGCGGAATTTTCAATTTTCGAAATYTACAGTGATCAATAATGAATTCCTGGCAATCTCTGAAATTGAAAATCTAGTTTTTTTTCGATTTTCGGAATATCCCTGCTCCATTTTTTCCTCTAAATGCCGATTCTGTATAGGCAATTATCCTTTTTCTTGGCTTTTTTATGACCACTACCATTTAAAAAGCCCTCATCACATTTCCTCCCACAAAAACGACCCAAATTTCTGTTTGCTGAGATCCGCCTTCATTTTCAAATGAGCTTCTCACGCTACAGTAAACCAGTTGAACAGCTGCTTCTTTCCAATTGACATCTTGTCATTTTTCTATGGGATTCTATAGGTCTCCTCGTTCTTCTTCGTAGGAAAATTCTGGAAAATTTAAATTCCTCACAAATATCATTCATTTGTTGTTGTTTTTGACTCCTTGATTCAAATAAGACGGATGAGAAGCGGATGGTCATTATTAGCCAGCCCCAGGAAGACGGATATATAGTTTCCGTTCTGCTCTCATGGTCATCGCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>298 246 202 189 65</canonical_bands>
                <polymorphic_bands>448 298 189 65</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTGAAAAATGTTTCTGAATTTT</pcr_primer_p1>
		<pcr_primer_p2>AGCCAAGAAAAAGGATAATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATTGAAAAATGTTTCTGAATTTTCCCATTTTCTGCATTTTTTGTGACTCTGATGTTGAATCAGATACGTTGACCCTTAGAAAAAAAATAGCGGAATTTTCAATTTTCGAAATCTACAGTGATCAATAATGAATTCCTGGCAATCTCTGAAATTGAAAATCTAGTTTTTTTTCGATTTTCGGAATATCCCTGCTCCATTTTTTCCTCTAAATGCCGATTCTGTATAGGCAATTATCCTTTTTCTTGGCT</canonical_amplicon>
		<polymorphic_amplicon>CTATTGAAAAATGTTTCTGAATTTTCCCATTTTCTGCATTTTTTGTGACTCTGATGTTGAATCAGATACGTTGACCCTTAGAAAAAAAATAGCGGAATTTTCAATTTTCGAAATYTACAGTGATCAATAATGAATTCCTGGCAATCTCTGAAATTGAAAATCTAGTTTTTTTTCGATTTTCGGAATATCCCTGCTCCATTTTTTCCTCTAAATGCCGATTCTGTATAGGCAATTATCCTTTTTCTTGGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14351</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>56200</contig_pos>
        <strand>+</strand>
        <context>TCTAAATGCC[A/G]ATTCTGTATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTTCGATTTTCGGAATATCCCTGCTCCATTTTTTCCTCTAAATGCC</left_flank>
        <right_flank>ATTCTGTATAGGCAATTATCCTTTTTCTTGGCTTTTTTATGACCACTACC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAGTACAGTAGGAAACAAAACGTTTCTCTTTTCGTTGATTTTTCTTCAATTTTTCATAGTTCAGAAATGGTAGTTTTCAAAACAGGAGTTCGTGATTTCAGAAAACTCTGGATTTTTCAAAAGAAATCCAGTAATTTAATAGAAATTTCAAAATTCAAAATAATAAAAAACTTAGCTATGGAATTTTTAAAATCTACAGTAATCGGATCATTTTATGTTATGTCCTAGAAATGTACTGTTATACATTTAAATAAATACAAAAAAACAGGAAAATCGATTTTCTATTGAAAAATGTTTCTGAATTTTCCCATTTTCTGCATTTTTTGTGACTCTGATGTTGAATCAGATACGTTGACCCTTAGAAAAAAAATAGCGGAATTTTCAATTTTCGAAATCTACAGTGATCAATAATGAATTCCTGGCAATCTCTGAAATTGAAAATCTAGTTTTTTTTCGATTTTCGGAATATCCCTGCTCCATTTTTTCCTCTAAATGCCGATTCTGTATAGGCAATTATCCTTTTTCTTGGCTTTTTTATGACCACTACCATTTAAAAAGCCCTCATCACATTTCCTCCCACAAAAACGACCCAAATTTCTGTTTGCTGAGATCCGCCTTCATTTTCAAATGAGCTTCTCACGCTACAGTAAACCAGTTGAACAGCTGCTTCTTTCCAATTGACATCTTGTCATTTTTCTATGGGATTCTATAGGTCTCCTCGTTCTTCTTCGTAGGAAAATTCTGGAAAATTTAAATTCCTCACAAATATCATTCATTTGTTGTTGTTTTTGACTCCTTGATTCAAATAAGACGGATGAGAAGCGGATGGTCATTATTAGCCAGCCCCAGGAAGACGGATATATAGTTTCCGTTCTGCTCTCATGGTCATCGCAAAAACTTTGAACTCTATTTCTCTATTTTCTGCTCACCCCGAGGATCCGTGTATCCATTTTCCTGGGAGACAGACGAAGTAACTCAATATTCTGAATAAAGTGGAC</canonical>
            <polymorphic>TTTAGTACAGTAGGAAACAAAACGTTTCTCTTTTCGTTGATTTTTCTTCAATTTTTCATAGTTCAGAAATGGTAGTTTTCAAAACAGGAGTTCGTGATTTCAGAAAACTCTGGATTTTTCAAAAGAAATCCAGTAATTTAATAGAAATTTCAAAATTCAAAATAATAAAAAACTTAGCTATGGAATTTTTAAAATCTACAGTAATCGGATCATTTTATGTTATGTCCTAGAAATGTACTGTTATACATTTAAATAAATACAAAAAAACAGGAAAATCGATTTTCTATTGAAAAATGTTTCTGAATTTTCCCATTTTCTGCATTTTTTGTGACTCTGATGTTGAATCAGATACGTTGACCCTTAGAAAAAAAATAGCGGAATTTTCAATTTTCGAAATCTACAGTGATCAATAATGAATTCCTGGCAATCTCTGAAATTGAAAATCTAGTTTTTTTTCGATTTTCGGAATATCCCTGCTCCATTTTTTCCTCTAAATGCCRATTCTGTATAGGCAATTATCCTTTTTCTTGGCTTTTTTATGACCACTACCATTTAAAAAGCCCTCATCACATTTCCTCCCACAAAAACGACCCAAATTTCTGTTTGCTGAGATCCGCCTTCATTTTCAAATGAGCTTCTCACGCTACAGTAAACCAGTTGAACAGCTGCTTCTTTCCAATTGACATCTTGTCATTTTTCTATGGGATTCTATAGGTCTCCTCGTTCTTCTTCGTAGGAAAATTCTGGAAAATTTAAATTCCTCACAAATATCATTCATTTGTTGTTGTTTTTGACTCCTTGATTCAAATAAGACGGATGAGAAGCGGATGGTCATTATTAGCCAGCCCCAGGAAGACGGATATATAGTTTCCGTTCTGCTCTCATGGTCATCGCAAAAACTTTGAACTCTATTTCTCTATTTTCTGCTCACCCCGAGGATCCGTGTATCCATTTTCCTGGGAGACAGACGAAGTAACTCAATATTCTGAATAAAGTGGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>330 205 199 158 88 12 8</canonical_bands>
                <polymorphic_bands>363 330 199 88 12 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>342 205 199 158 96</canonical_bands>
                <polymorphic_bands>363 342 199 96</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAATGAATTCCTGGCAATCT</pcr_primer_p1>
		<pcr_primer_p2>AACTGGTTTACTGTAGCGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAATGAATTCCTGGCAATCTCTGAAATTGAAAATCTAGTTTTTTTTCGATTTTCGGAATATCCCTGCTCCATTTTTTCCTCTAAATGCCGATTCTGTATAGGCAATTATCCTTTTTCTTGGCTTTTTTATGACCACTACCATTTAAAAAGCCCTCATCACATTTCCTCCCACAAAAACGACCCAAATTTCTGTTTGCTGAGATCCGCCTTCATTTTCAAATGAGCTTCTCACGCTACAGTAAACCAGTT</canonical_amplicon>
		<polymorphic_amplicon>ATAATGAATTCCTGGCAATCTCTGAAATTGAAAATCTAGTTTTTTTTCGATTTTCGGAATATCCCTGCTCCATTTTTTCCTCTAAATGCCRATTCTGTATAGGCAATTATCCTTTTTCTTGGCTTTTTTATGACCACTACCATTTAAAAAGCCCTCATCACATTTCCTCCCACAAAAACGACCCAAATTTCTGTTTGCTGAGATCCGCCTTCATTTTCAAATGAGCTTCTCACGCTACAGTAAACCAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14352</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>56288</contig_pos>
        <strand>+</strand>
        <context>CCCACAAAAA[C/T]GACCCAAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATGACCACTACCATTTAAAAAGCCCTCATCACATTTCCTCCCACAAAAA</left_flank>
        <right_flank>GACCCAAATTTCTGTTTGCTGAGATCCGCCTTCATTTTCAAATGAGCTTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTCGTGATTTCAGAAAACTCTGGATTTTTCAAAAGAAATCCAGTAATTTAATAGAAATTTCAAAATTCAAAATAATAAAAAACTTAGCTATGGAATTTTTAAAATCTACAGTAATCGGATCATTTTATGTTATGTCCTAGAAATGTACTGTTATACATTTAAATAAATACAAAAAAACAGGAAAATCGATTTTCTATTGAAAAATGTTTCTGAATTTTCCCATTTTCTGCATTTTTTGTGACTCTGATGTTGAATCAGATACGTTGACCCTTAGAAAAAAAATAGCGGAATTTTCAATTTTCGAAATCTACAGTGATCAATAATGAATTCCTGGCAATCTCTGAAATTGAAAATCTAGTTTTTTTTCGATTTTCGGAATATCCCTGCTCCATTTTTTCCTCTAAATGCCGATTCTGTATAGGCAATTATCCTTTTTCTTGGCTTTTTTATGACCACTACCATTTAAAAAGCCCTCATCACATTTCCTCCCACAAAAACGACCCAAATTTCTGTTTGCTGAGATCCGCCTTCATTTTCAAATGAGCTTCTCACGCTACAGTAAACCAGTTGAACAGCTGCTTCTTTCCAATTGACATCTTGTCATTTTTCTATGGGATTCTATAGGTCTCCTCGTTCTTCTTCGTAGGAAAATTCTGGAAAATTTAAATTCCTCACAAATATCATTCATTTGTTGTTGTTTTTGACTCCTTGATTCAAATAAGACGGATGAGAAGCGGATGGTCATTATTAGCCAGCCCCAGGAAGACGGATATATAGTTTCCGTTCTGCTCTCATGGTCATCGCAAAAACTTTGAACTCTATTTCTCTATTTTCTGCTCACCCCGAGGATCCGTGTATCCATTTTCCTGGGAGACAGACGAAGTAACTCAATATTCTGAATAAAGTGGACGTATAGAGCACGCGCTTAGTCTACTGAGTAATCGTAAAAATTAGTTCGTAAGGAACATTATCCTTTCGAAAAAAGGGAAATCTCATTC</canonical>
            <polymorphic>AGTTCGTGATTTCAGAAAACTCTGGATTTTTCAAAAGAAATCCAGTAATTTAATAGAAATTTCAAAATTCAAAATAATAAAAAACTTAGCTATGGAATTTTTAAAATCTACAGTAATCGGATCATTTTATGTTATGTCCTAGAAATGTACTGTTATACATTTAAATAAATACAAAAAAACAGGAAAATCGATTTTCTATTGAAAAATGTTTCTGAATTTTCCCATTTTCTGCATTTTTTGTGACTCTGATGTTGAATCAGATACGTTGACCCTTAGAAAAAAAATAGCGGAATTTTCAATTTTCGAAATCTACAGTGATCAATAATGAATTCCTGGCAATCTCTGAAATTGAAAATCTAGTTTTTTTTCGATTTTCGGAATATCCCTGCTCCATTTTTTCCTCTAAATGCCGATTCTGTATAGGCAATTATCCTTTTTCTTGGCTTTTTTATGACCACTACCATTTAAAAAGCCCTCATCACATTTCCTCCCACAAAAAYGACCCAAATTTCTGTTTGCTGAGATCCGCCTTCATTTTCAAATGAGCTTCTCACGCTACAGTAAACCAGTTGAACAGCTGCTTCTTTCCAATTGACATCTTGTCATTTTTCTATGGGATTCTATAGGTCTCCTCGTTCTTCTTCGTAGGAAAATTCTGGAAAATTTAAATTCCTCACAAATATCATTCATTTGTTGTTGTTTTTGACTCCTTGATTCAAATAAGACGGATGAGAAGCGGATGGTCATTATTAGCCAGCCCCAGGAAGACGGATATATAGTTTCCGTTCTGCTCTCATGGTCATCGCAAAAACTTTGAACTCTATTTCTCTATTTTCTGCTCACCCCGAGGATCCGTGTATCCATTTTCCTGGGAGACAGACGAAGTAACTCAATATTCTGAATAAAGTGGACGTATAGAGCACGCGCTTAGTCTACTGAGTAATCGTAAAAATTAGTTCGTAAGGAACATTATCCTTTCGAAAAAAGGGAAATCTCATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGGCAATTATCCTTTTTCTTG</pcr_primer_p1>
		<pcr_primer_p2>TTAAATTTTCCAGAATTTTCCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATAGGCAATTATCCTTTTTCTTGGCTTTTTTATGACCACTACCATTTAAAAAGCCCTCATCACATTTCCTCCCACAAAAACGACCCAAATTTCTGTTTGCTGAGATCCGCCTTCATTTTCAAATGAGCTTCTCACGCTACAGTAAACCAGTTGAACAGCTGCTTCTTTCCAATTGACATCTTGTCATTTTTCTATGGGATTCTATAGGTCTCCTCGTTCTTCTTCGTAGGAAAATTCTGGAAAATTTAA</canonical_amplicon>
		<polymorphic_amplicon>ATAGGCAATTATCCTTTTTCTTGGCTTTTTTATGACCACTACCATTTAAAAAGCCCTCATCACATTTCCTCCCACAAAAAYGACCCAAATTTCTGTTTGCTGAGATCCGCCTTCATTTTCAAATGAGCTTCTCACGCTACAGTAAACCAGTTGAACAGCTGCTTCTTTCCAATTGACATCTTGTCATTTTTCTATGGGATTCTATAGGTCTCCTCGTTCTTCTTCGTAGGAAAATTCTGGAAAATTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14353</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>56576</contig_pos>
        <strand>+</strand>
        <context>AGTTTCCGTT[C/T]TGCTCTCATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGATGGTCATTATTAGCCAGCCCCAGGAAGACGGATATATAGTTTCCGTT</left_flank>
        <right_flank>TGCTCTCATGGTCATCGCAAAAACTTTGAACTCTATTTCTCTATTTTCTG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAATTTTCAATTTTCGAAATCTACAGTGATCAATAATGAATTCCTGGCAATCTCTGAAATTGAAAATCTAGTTTTTTTTCGATTTTCGGAATATCCCTGCTCCATTTTTTCCTCTAAATGCCGATTCTGTATAGGCAATTATCCTTTTTCTTGGCTTTTTTATGACCACTACCATTTAAAAAGCCCTCATCACATTTCCTCCCACAAAAACGACCCAAATTTCTGTTTGCTGAGATCCGCCTTCATTTTCAAATGAGCTTCTCACGCTACAGTAAACCAGTTGAACAGCTGCTTCTTTCCAATTGACATCTTGTCATTTTTCTATGGGATTCTATAGGTCTCCTCGTTCTTCTTCGTAGGAAAATTCTGGAAAATTTAAATTCCTCACAAATATCATTCATTTGTTGTTGTTTTTGACTCCTTGATTCAAATAAGACGGATGAGAAGCGGATGGTCATTATTAGCCAGCCCCAGGAAGACGGATATATAGTTTCCGTTCTGCTCTCATGGTCATCGCAAAAACTTTGAACTCTATTTCTCTATTTTCTGCTCACCCCGAGGATCCGTGTATCCATTTTCCTGGGAGACAGACGAAGTAACTCAATATTCTGAATAAAGTGGACGTATAGAGCACGCGCTTAGTCTACTGAGTAATCGTAAAAATTAGTTCGTAAGGAACATTATCCTTTCGAAAAAAGGGAAATCTCATTCATTTAACAGCCATTTGTATTCAAACTATACATGGAAAGAAAACGAAGCTTTCACCGTGCATTTACTTTTTTCTCGTTTGTCCTACGTCTCCATTCTCATCTATTCTGACATGAATAATCTTCAATTTTCCCAATTCACGCGCGAAAACTCTTTTTCCTTTTCTTCATACTTTACTCTCAAGTTCTGAAGACGTCTTTTCCTCAGAGTTCAAATCCTTTTGATGGTGTGAGACTTCATGTCGTCCATAATTCATTGAATTGTGAGTACGTACTTTCCTATTGTTGTCTC</canonical>
            <polymorphic>GGAATTTTCAATTTTCGAAATCTACAGTGATCAATAATGAATTCCTGGCAATCTCTGAAATTGAAAATCTAGTTTTTTTTCGATTTTCGGAATATCCCTGCTCCATTTTTTCCTCTAAATGCCGATTCTGTATAGGCAATTATCCTTTTTCTTGGCTTTTTTATGACCACTACCATTTAAAAAGCCCTCATCACATTTCCTCCCACAAAAACGACCCAAATTTCTGTTTGCTGAGATCCGCCTTCATTTTCAAATGAGCTTCTCACGCTACAGTAAACCAGTTGAACAGCTGCTTCTTTCCAATTGACATCTTGTCATTTTTCTATGGGATTCTATAGGTCTCCTCGTTCTTCTTCGTAGGAAAATTCTGGAAAATTTAAATTCCTCACAAATATCATTCATTTGTTGTTGTTTTTGACTCCTTGATTCAAATAAGACGGATGAGAAGCGGATGGTCATTATTAGCCAGCCCCAGGAAGACGGATATATAGTTTCCGTTYTGCTCTCATGGTCATCGCAAAAACTTTGAACTCTATTTCTCTATTTTCTGCTCACCCCGAGGATCCGTGTATCCATTTTCCTGGGAGACAGACGAAGTAACTCAATATTCTGAATAAAGTGGACGTATAGAGCACGCGCTTAGTCTACTGAGTAATCGTAAAAATTAGTTCGTAAGGAACATTATCCTTTCGAAAAAAGGGAAATCTCATTCATTTAACAGCCATTTGTATTCAAACTATACATGGAAAGAAAACGAAGCTTTCACCGTGCATTTACTTTTTTCTCGTTTGTCCTACGTCTCCATTCTCATCTATTCTGACATGAATAATCTTCAATTTTCCCAATTCACGCGCGAAAACTCTTTTTCCTTTTCTTCATACTTTACTCTCAAGTTCTGAAGACGTCTTTTCCTCAGAGTTCAAATCCTTTTGATGGTGTGAGACTTCATGTCGTCCATAATTCATTGAATTGTGAGTACGTACTTTCCTATTGTTGTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCTCACAAATATCATTCATTT</pcr_primer_p1>
		<pcr_primer_p2>GCTCTATACGTCCACTTTATTCA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTCCTCACAAATATCATTCATTTGTTGTTGTTTTTGACTCCTTGATTCAAATAAGACGGATGAGAAGCGGATGGTCATTATTAGCCAGCCCCAGGAAGACGGATATATAGTTTCCGTTCTGCTCTCATGGTCATCGCAAAAACTTTGAACTCTATTTCTCTATTTTCTGCTCACCCCGAGGATCCGTGTATCCATTTTCCTGGGAGACAGACGAAGTAACTCAATATTCTGAATAAAGTGGACGTATAGAGC</canonical_amplicon>
		<polymorphic_amplicon>TTCCTCACAAATATCATTCATTTGTTGTTGTTTTTGACTCCTTGATTCAAATAAGACGGATGAGAAGCGGATGGTCATTATTAGCCAGCCCCAGGAAGACGGATATATAGTTTCCGTTYTGCTCTCATGGTCATCGCAAAAACTTTGAACTCTATTTCTCTATTTTCTGCTCACCCCGAGGATCCGTGTATCCATTTTCCTGGGAGACAGACGAAGTAACTCAATATTCTGAATAAAGTGGACGTATAGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14354</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>56592</contig_pos>
        <strand>+</strand>
        <context>TCATGGTCAT[C/T]GCAAAAACTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAGCCCCAGGAAGACGGATATATAGTTTCCGTTCTGCTCTCATGGTCAT</left_flank>
        <right_flank>GCAAAAACTTTGAACTCTATTTCTCTATTTTCTGCTCACCCCGAGGATCC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATCTACAGTGATCAATAATGAATTCCTGGCAATCTCTGAAATTGAAAATCTAGTTTTTTTTCGATTTTCGGAATATCCCTGCTCCATTTTTTCCTCTAAATGCCGATTCTGTATAGGCAATTATCCTTTTTCTTGGCTTTTTTATGACCACTACCATTTAAAAAGCCCTCATCACATTTCCTCCCACAAAAACGACCCAAATTTCTGTTTGCTGAGATCCGCCTTCATTTTCAAATGAGCTTCTCACGCTACAGTAAACCAGTTGAACAGCTGCTTCTTTCCAATTGACATCTTGTCATTTTTCTATGGGATTCTATAGGTCTCCTCGTTCTTCTTCGTAGGAAAATTCTGGAAAATTTAAATTCCTCACAAATATCATTCATTTGTTGTTGTTTTTGACTCCTTGATTCAAATAAGACGGATGAGAAGCGGATGGTCATTATTAGCCAGCCCCAGGAAGACGGATATATAGTTTCCGTTCTGCTCTCATGGTCATCGCAAAAACTTTGAACTCTATTTCTCTATTTTCTGCTCACCCCGAGGATCCGTGTATCCATTTTCCTGGGAGACAGACGAAGTAACTCAATATTCTGAATAAAGTGGACGTATAGAGCACGCGCTTAGTCTACTGAGTAATCGTAAAAATTAGTTCGTAAGGAACATTATCCTTTCGAAAAAAGGGAAATCTCATTCATTTAACAGCCATTTGTATTCAAACTATACATGGAAAGAAAACGAAGCTTTCACCGTGCATTTACTTTTTTCTCGTTTGTCCTACGTCTCCATTCTCATCTATTCTGACATGAATAATCTTCAATTTTCCCAATTCACGCGCGAAAACTCTTTTTCCTTTTCTTCATACTTTACTCTCAAGTTCTGAAGACGTCTTTTCCTCAGAGTTCAAATCCTTTTGATGGTGTGAGACTTCATGTCGTCCATAATTCATTGAATTGTGAGTACGTACTTTCCTATTGTTGTCTCTATCGCTCCTATTTCA</canonical>
            <polymorphic>GAAATCTACAGTGATCAATAATGAATTCCTGGCAATCTCTGAAATTGAAAATCTAGTTTTTTTTCGATTTTCGGAATATCCCTGCTCCATTTTTTCCTCTAAATGCCGATTCTGTATAGGCAATTATCCTTTTTCTTGGCTTTTTTATGACCACTACCATTTAAAAAGCCCTCATCACATTTCCTCCCACAAAAACGACCCAAATTTCTGTTTGCTGAGATCCGCCTTCATTTTCAAATGAGCTTCTCACGCTACAGTAAACCAGTTGAACAGCTGCTTCTTTCCAATTGACATCTTGTCATTTTTCTATGGGATTCTATAGGTCTCCTCGTTCTTCTTCGTAGGAAAATTCTGGAAAATTTAAATTCCTCACAAATATCATTCATTTGTTGTTGTTTTTGACTCCTTGATTCAAATAAGACGGATGAGAAGCGGATGGTCATTATTAGCCAGCCCCAGGAAGACGGATATATAGTTTCCGTTCTGCTCTCATGGTCATYGCAAAAACTTTGAACTCTATTTCTCTATTTTCTGCTCACCCCGAGGATCCGTGTATCCATTTTCCTGGGAGACAGACGAAGTAACTCAATATTCTGAATAAAGTGGACGTATAGAGCACGCGCTTAGTCTACTGAGTAATCGTAAAAATTAGTTCGTAAGGAACATTATCCTTTCGAAAAAAGGGAAATCTCATTCATTTAACAGCCATTTGTATTCAAACTATACATGGAAAGAAAACGAAGCTTTCACCGTGCATTTACTTTTTTCTCGTTTGTCCTACGTCTCCATTCTCATCTATTCTGACATGAATAATCTTCAATTTTCCCAATTCACGCGCGAAAACTCTTTTTCCTTTTCTTCATACTTTACTCTCAAGTTCTGAAGACGTCTTTTCCTCAGAGTTCAAATCCTTTTGATGGTGTGAGACTTCATGTCGTCCATAATTCATTGAATTGTGAGTACGTACTTTCCTATTGTTGTCTCTATCGCTCCTATTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCTCACAAATATCATTCATTT</pcr_primer_p1>
		<pcr_primer_p2>GCTCTATACGTCCACTTTATTCA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTCCTCACAAATATCATTCATTTGTTGTTGTTTTTGACTCCTTGATTCAAATAAGACGGATGAGAAGCGGATGGTCATTATTAGCCAGCCCCAGGAAGACGGATATATAGTTTCCGTTCTGCTCTCATGGTCATCGCAAAAACTTTGAACTCTATTTCTCTATTTTCTGCTCACCCCGAGGATCCGTGTATCCATTTTCCTGGGAGACAGACGAAGTAACTCAATATTCTGAATAAAGTGGACGTATAGAGC</canonical_amplicon>
		<polymorphic_amplicon>TTCCTCACAAATATCATTCATTTGTTGTTGTTTTTGACTCCTTGATTCAAATAAGACGGATGAGAAGCGGATGGTCATTATTAGCCAGCCCCAGGAAGACGGATATATAGTTTCCGTTCTGCTCTCATGGTCATYGCAAAAACTTTGAACTCTATTTCTCTATTTTCTGCTCACCCCGAGGATCCGTGTATCCATTTTCCTGGGAGACAGACGAAGTAACTCAATATTCTGAATAAAGTGGACGTATAGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14355</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>56615</contig_pos>
        <strand>+</strand>
        <context>AACTCTATTT[C/T]TCTATTTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGTTTCCGTTCTGCTCTCATGGTCATCGCAAAAACTTTGAACTCTATTT</left_flank>
        <right_flank>TCTATTTTCTGCTCACCCCGAGGATCCGTGTATCCATTTTCCTGGGAGAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCCTGGCAATCTCTGAAATTGAAAATCTAGTTTTTTTTCGATTTTCGGAATATCCCTGCTCCATTTTTTCCTCTAAATGCCGATTCTGTATAGGCAATTATCCTTTTTCTTGGCTTTTTTATGACCACTACCATTTAAAAAGCCCTCATCACATTTCCTCCCACAAAAACGACCCAAATTTCTGTTTGCTGAGATCCGCCTTCATTTTCAAATGAGCTTCTCACGCTACAGTAAACCAGTTGAACAGCTGCTTCTTTCCAATTGACATCTTGTCATTTTTCTATGGGATTCTATAGGTCTCCTCGTTCTTCTTCGTAGGAAAATTCTGGAAAATTTAAATTCCTCACAAATATCATTCATTTGTTGTTGTTTTTGACTCCTTGATTCAAATAAGACGGATGAGAAGCGGATGGTCATTATTAGCCAGCCCCAGGAAGACGGATATATAGTTTCCGTTCTGCTCTCATGGTCATCGCAAAAACTTTGAACTCTATTTCTCTATTTTCTGCTCACCCCGAGGATCCGTGTATCCATTTTCCTGGGAGACAGACGAAGTAACTCAATATTCTGAATAAAGTGGACGTATAGAGCACGCGCTTAGTCTACTGAGTAATCGTAAAAATTAGTTCGTAAGGAACATTATCCTTTCGAAAAAAGGGAAATCTCATTCATTTAACAGCCATTTGTATTCAAACTATACATGGAAAGAAAACGAAGCTTTCACCGTGCATTTACTTTTTTCTCGTTTGTCCTACGTCTCCATTCTCATCTATTCTGACATGAATAATCTTCAATTTTCCCAATTCACGCGCGAAAACTCTTTTTCCTTTTCTTCATACTTTACTCTCAAGTTCTGAAGACGTCTTTTCCTCAGAGTTCAAATCCTTTTGATGGTGTGAGACTTCATGTCGTCCATAATTCATTGAATTGTGAGTACGTACTTTCCTATTGTTGTCTCTATCGCTCCTATTTCACGTAATGGAGTCTTTTTTTTTGG</canonical>
            <polymorphic>AATTCCTGGCAATCTCTGAAATTGAAAATCTAGTTTTTTTTCGATTTTCGGAATATCCCTGCTCCATTTTTTCCTCTAAATGCCGATTCTGTATAGGCAATTATCCTTTTTCTTGGCTTTTTTATGACCACTACCATTTAAAAAGCCCTCATCACATTTCCTCCCACAAAAACGACCCAAATTTCTGTTTGCTGAGATCCGCCTTCATTTTCAAATGAGCTTCTCACGCTACAGTAAACCAGTTGAACAGCTGCTTCTTTCCAATTGACATCTTGTCATTTTTCTATGGGATTCTATAGGTCTCCTCGTTCTTCTTCGTAGGAAAATTCTGGAAAATTTAAATTCCTCACAAATATCATTCATTTGTTGTTGTTTTTGACTCCTTGATTCAAATAAGACGGATGAGAAGCGGATGGTCATTATTAGCCAGCCCCAGGAAGACGGATATATAGTTTCCGTTCTGCTCTCATGGTCATCGCAAAAACTTTGAACTCTATTTYTCTATTTTCTGCTCACCCCGAGGATCCGTGTATCCATTTTCCTGGGAGACAGACGAAGTAACTCAATATTCTGAATAAAGTGGACGTATAGAGCACGCGCTTAGTCTACTGAGTAATCGTAAAAATTAGTTCGTAAGGAACATTATCCTTTCGAAAAAAGGGAAATCTCATTCATTTAACAGCCATTTGTATTCAAACTATACATGGAAAGAAAACGAAGCTTTCACCGTGCATTTACTTTTTTCTCGTTTGTCCTACGTCTCCATTCTCATCTATTCTGACATGAATAATCTTCAATTTTCCCAATTCACGCGCGAAAACTCTTTTTCCTTTTCTTCATACTTTACTCTCAAGTTCTGAAGACGTCTTTTCCTCAGAGTTCAAATCCTTTTGATGGTGTGAGACTTCATGTCGTCCATAATTCATTGAATTGTGAGTACGTACTTTCCTATTGTTGTCTCTATCGCTCCTATTTCACGTAATGGAGTCTTTTTTTTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCTCACAAATATCATTCATTT</pcr_primer_p1>
		<pcr_primer_p2>GCTCTATACGTCCACTTTATTCA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTCCTCACAAATATCATTCATTTGTTGTTGTTTTTGACTCCTTGATTCAAATAAGACGGATGAGAAGCGGATGGTCATTATTAGCCAGCCCCAGGAAGACGGATATATAGTTTCCGTTCTGCTCTCATGGTCATCGCAAAAACTTTGAACTCTATTTCTCTATTTTCTGCTCACCCCGAGGATCCGTGTATCCATTTTCCTGGGAGACAGACGAAGTAACTCAATATTCTGAATAAAGTGGACGTATAGAGC</canonical_amplicon>
		<polymorphic_amplicon>TTCCTCACAAATATCATTCATTTGTTGTTGTTTTTGACTCCTTGATTCAAATAAGACGGATGAGAAGCGGATGGTCATTATTAGCCAGCCCCAGGAAGACGGATATATAGTTTCCGTTCTGCTCTCATGGTCATCGCAAAAACTTTGAACTCTATTTYTCTATTTTCTGCTCACCCCGAGGATCCGTGTATCCATTTTCCTGGGAGACAGACGAAGTAACTCAATATTCTGAATAAAGTGGACGTATAGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14356</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>59549</contig_pos>
        <strand>+</strand>
        <context>CAACCCAAAA[A/G]TAGGGTCTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAATTGAGCTCAAGGTTGACGATTTGAGTGAGCTCATAGCAACCCAAAA</left_flank>
        <right_flank>TAGGGTCTGAAAAATGTGTTTCACTAGCCTGTTTCACTGAAAGATTTTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGACACATTGCTTTGGGTGTCGCGGCTCTTAGAGCCAAAGTGTTGATCTTTTCTGGTCCCAAAGGGAGATTTTCGCCGCCATTTCATACTGGGGATAACCATGTTATAGACACTGAGAACGAGTTCTTTCAAATTTTTCGAGAAGATTTTGGGTACATTTTTCATGAGGTTTCTAGAAGATTACTGTAGTTTTGAAAAATAGAGTTTTGCTAAATCTATTTTGAGGGAAGATCAGTCAAAATAATAAACCATAACTTAGAAGGGCTATTAGGAACTAGCCAAAATGCCAAATTTTTACATCCAGCCCATCCAAACTGTCAACTCTAAGCTCAATTATTTCGATTCCGGTGAAAGATATAAACTATCTATCAACTAATGAAATATTGGTGACATTATGGTAAACAATTTATCAATTGACAATTTTATGATGTTTTTCACAGATACCGAGCAAATTGAGCTCAAGGTTGACGATTTGAGTGAGCTCATAGCAACCCAAAAGTAGGGTCTGAAAAATGTGTTTCACTAGCCTGTTTCACTGAAAGATTTTGACCCAATTTGTGAAGTTCAGATTTTTTTCTTAGCAGTTTTGGATAAGTACGCGCTGAAATTACAATTTGAAACCTGTAAAATAAAAAGAAACAAATCCTTCAAATTTCAAGAAAAAAAGGACAAATATTAAGTACTTTTTAGACCCTCATAATTGGCAACTTTCGACTAATTTTAGCTCGTAAACAGTTAAATATGCTGCCCCAATTAACTCTCACATTTAAACCAATTTATCTCGGTTCCTGTGAAAAGTATCAAAAACTGGTTAACAAAAAAAAATATAGATAATTTGACGGAAAATATTTTATCAGTTGATAGACTTTTGATATTTCTTCCAGGAAATGAGATACATGGCTTTGAAGATGACGGTTTGGGTGCCATTAGGATATTCTGGATTTTTGGTCCACACCACTAAATCTTTTCATAAACCGATGCCTCCAGAATTTCCCAATA</canonical>
            <polymorphic>GGGACACATTGCTTTGGGTGTCGCGGCTCTTAGAGCCAAAGTGTTGATCTTTTCTGGTCCCAAAGGGAGATTTTCGCCGCCATTTCATACTGGGGATAACCATGTTATAGACACTGAGAACGAGTTCTTTCAAATTTTTCGAGAAGATTTTGGGTACATTTTTCATGAGGTTTCTAGAAGATTACTGTAGTTTTGAAAAATAGAGTTTTGCTAAATCTATTTTGAGGGAAGATCAGTCAAAATAATAAACCATAACTTAGAAGGGCTATTAGGAACTAGCCAAAATGCCAAATTTTTACATCCAGCCCATCCAAACTGTCAACTCTAAGCTCAATTATTTCGATTCCGGTGAAAGATATAAACTATCTATCAACTAATGAAATATTGGTGACATTATGGTAAACAATTTATCAATTGACAATTTTATGATGTTTTTCACAGATACCGAGCAAATTGAGCTCAAGGTTGACGATTTGAGTGAGCTCATAGCAACCCAAAARTAGGGTCTGAAAAATGTGTTTCACTAGCCTGTTTCACTGAAAGATTTTGACCCAATTTGTGAAGTTCAGATTTTTTTCTTAGCAGTTTTGGATAAGTACGCGCTGAAATTACAATTTGAAACCTGTAAAATAAAAAGAAACAAATCCTTCAAATTTCAAGAAAAAAAGGACAAATATTAAGTACTTTTTAGACCCTCATAATTGGCAACTTTCGACTAATTTTAGCTCGTAAACAGTTAAATATGCTGCCCCAATTAACTCTCACATTTAAACCAATTTATCTCGGTTCCTGTGAAAAGTATCAAAAACTGGTTAACAAAAAAAAATATAGATAATTTGACGGAAAATATTTTATCAGTTGATAGACTTTTGATATTTCTTCCAGGAAATGAGATACATGGCTTTGAAGATGACGGTTTGGGTGCCATTAGGATATTCTGGATTTTTGGTCCACACCACTAAATCTTTTCATAAACCGATGCCTCCAGAATTTCCCAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTTAGAAGGGCTATTAGGAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTGGGTCAAAATCTTTCAGT</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>AACTTAGAAGGGCTATTAGGAACTAGCCAAAATGCCAAATTTTTACATCCAGCCCATCCAAACTGTCAACTCTAAGCTCAATTATTTCGATTCCGGTGAAAGATATAAACTATCTATCAACTAATGAAATATTGGTGACATTATGGTAAACAATTTATCAATTGACAATTTTATGATGTTTTTCACAGATACCGAGCAAATTGAGCTCAAGGTTGACGATTTGAGTGAGCTCATAGCAACCCAAAAGTAGGGTCTGAAAAATGTGTTTCACTAGCCTGTTTCACTGAAAGATTTTGACCCAAT</canonical_amplicon>
		<polymorphic_amplicon>AACTTAGAAGGGCTATTAGGAACTAGCCAAAATGCCAAATTTTTACATCCAGCCCATCCAAACTGTCAACTCTAAGCTCAATTATTTCGATTCCGGTGAAAGATATAAACTATCTATCAACTAATGAAATATTGGTGACATTATGGTAAACAATTTATCAATTGACAATTTTATGATGTTTTTCACAGATACCGAGCAAATTGAGCTCAAGGTTGACGATTTGAGTGAGCTCATAGCAACCCAAAARTAGGGTCTGAAAAATGTGTTTCACTAGCCTGTTTCACTGAAAGATTTTGACCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14357</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>59526</contig_pos>
        <strand>+</strand>
        <context>tgaCGATTTG[A/G]GTGAGCTCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATGTTTTTCACAGATACCGAGCAAATTGAGCTCAAGGTTGACGATTTG</left_flank>
        <right_flank>GTGAGCTCATAGCAACCCAAAAGTAGGGTCTGAAAAATGTGTTTCACTAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGCTGTTTCTGTGTATGCTGGTGGGACACATTGCTTTGGGTGTCGCGGCTCTTAGAGCCAAAGTGTTGATCTTTTCTGGTCCCAAAGGGAGATTTTCGCCGCCATTTCATACTGGGGATAACCATGTTATAGACACTGAGAACGAGTTCTTTCAAATTTTTCGAGAAGATTTTGGGTACATTTTTCATGAGGTTTCTAGAAGATTACTGTAGTTTTGAAAAATAGAGTTTTGCTAAATCTATTTTGAGGGAAGATCAGTCAAAATAATAAACCATAACTTAGAAGGGCTATTAGGAACTAGCCAAAATGCCAAATTTTTACATCCAGCCCATCCAAACTGTCAACTCTAAGCTCAATTATTTCGATTCCGGTGAAAGATATAAACTATCTATCAACTAATGAAATATTGGTGACATTATGGTAAACAATTTATCAATTGACAATTTTATGATGTTTTTCACAGATACCGAGCAAATTGAGCTCAAGGTTGACGATTTGAGTGAGCTCATAGCAACCCAAAAGTAGGGTCTGAAAAATGTGTTTCACTAGCCTGTTTCACTGAAAGATTTTGACCCAATTTGTGAAGTTCAGATTTTTTTCTTAGCAGTTTTGGATAAGTACGCGCTGAAATTACAATTTGAAACCTGTAAAATAAAAAGAAACAAATCCTTCAAATTTCAAGAAAAAAAGGACAAATATTAAGTACTTTTTAGACCCTCATAATTGGCAACTTTCGACTAATTTTAGCTCGTAAACAGTTAAATATGCTGCCCCAATTAACTCTCACATTTAAACCAATTTATCTCGGTTCCTGTGAAAAGTATCAAAAACTGGTTAACAAAAAAAAATATAGATAATTTGACGGAAAATATTTTATCAGTTGATAGACTTTTGATATTTCTTCCAGGAAATGAGATACATGGCTTTGAAGATGACGGTTTGGGTGCCATTAGGATATTCTGGATTTTTGGTCCACACCACTAAATCTTTTCATAAACC</canonical>
            <polymorphic>GTGCTGTTTCTGTGTATGCTGGTGGGACACATTGCTTTGGGTGTCGCGGCTCTTAGAGCCAAAGTGTTGATCTTTTCTGGTCCCAAAGGGAGATTTTCGCCGCCATTTCATACTGGGGATAACCATGTTATAGACACTGAGAACGAGTTCTTTCAAATTTTTCGAGAAGATTTTGGGTACATTTTTCATGAGGTTTCTAGAAGATTACTGTAGTTTTGAAAAATAGAGTTTTGCTAAATCTATTTTGAGGGAAGATCAGTCAAAATAATAAACCATAACTTAGAAGGGCTATTAGGAACTAGCCAAAATGCCAAATTTTTACATCCAGCCCATCCAAACTGTCAACTCTAAGCTCAATTATTTCGATTCCGGTGAAAGATATAAACTATCTATCAACTAATGAAATATTGGTGACATTATGGTAAACAATTTATCAATTGACAATTTTATGATGTTTTTCACAGATACCGAGCAAATTGAGCTCAAGGTTGACGATTTGRGTGAGCTCATAGCAACCCAAAAGTAGGGTCTGAAAAATGTGTTTCACTAGCCTGTTTCACTGAAAGATTTTGACCCAATTTGTGAAGTTCAGATTTTTTTCTTAGCAGTTTTGGATAAGTACGCGCTGAAATTACAATTTGAAACCTGTAAAATAAAAAGAAACAAATCCTTCAAATTTCAAGAAAAAAAGGACAAATATTAAGTACTTTTTAGACCCTCATAATTGGCAACTTTCGACTAATTTTAGCTCGTAAACAGTTAAATATGCTGCCCCAATTAACTCTCACATTTAAACCAATTTATCTCGGTTCCTGTGAAAAGTATCAAAAACTGGTTAACAAAAAAAAATATAGATAATTTGACGGAAAATATTTTATCAGTTGATAGACTTTTGATATTTCTTCCAGGAAATGAGATACATGGCTTTGAAGATGACGGTTTGGGTGCCATTAGGATATTCTGGATTTTTGGTCCACACCACTAAATCTTTTCATAAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAAATGCCAAATTTTTAC</pcr_primer_p1>
		<pcr_primer_p2>ACAGGCTAGTGAAACACATTTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CCAAAATGCCAAATTTTTACATCCAGCCCATCCAAACTGTCAACTCTAAGCTCAATTATTTCGATTCCGGTGAAAGATATAAACTATCTATCAACTAATGAAATATTGGTGACATTATGGTAAACAATTTATCAATTGACAATTTTATGATGTTTTTCACAGATACCGAGCAAATTGAGCTCAAGGTTGACGATTTGAGTGAGCTCATAGCAACCCAAAAGTAGGGTCTGAAAAATGTGTTTCACTAGCCTGT</canonical_amplicon>
		<polymorphic_amplicon>CCAAAATGCCAAATTTTTACATCCAGCCCATCCAAACTGTCAACTCTAAGCTCAATTATTTCGATTCCGGTGAAAGATATAAACTATCTATCAACTAATGAAATATTGGTGACATTATGGTAAACAATTTATCAATTGACAATTTTATGATGTTTTTCACAGATACCGAGCAAATTGAGCTCAAGGTTGACGATTTGRGTGAGCTCATAGCAACCCAAAAGTAGGGTCTGAAAAATGTGTTTCACTAGCCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14358</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>60014</contig_pos>
        <strand>+</strand>
        <context>ACCACTAAAT[C/T]TTTTCATAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTTTGGGTGCCATTAGGATATTCTGGATTTTTGGTCCACACCACTAAAT</left_flank>
        <right_flank>TTTTCATAAACCGATGCCTCCAGAATTTCCCAATAATTTTCAACCATTGG</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGACGATTTGAGTGAGCTCATAGCAACCCAAAAGTAGGGTCTGAAAAATGTGTTTCACTAGCCTGTTTCACTGAAAGATTTTGACCCAATTTGTGAAGTTCAGATTTTTTTCTTAGCAGTTTTGGATAAGTACGCGCTGAAATTACAATTTGAAACCTGTAAAATAAAAAGAAACAAATCCTTCAAATTTCAAGAAAAAAAGGACAAATATTAAGTACTTTTTAGACCCTCATAATTGGCAACTTTCGACTAATTTTAGCTCGTAAACAGTTAAATATGCTGCCCCAATTAACTCTCACATTTAAACCAATTTATCTCGGTTCCTGTGAAAAGTATCAAAAACTGGTTAACAAAAAAAAATATAGATAATTTGACGGAAAATATTTTATCAGTTGATAGACTTTTGATATTTCTTCCAGGAAATGAGATACATGGCTTTGAAGATGACGGTTTGGGTGCCATTAGGATATTCTGGATTTTTGGTCCACACCACTAAATCTTTTCATAAACCGATGCCTCCAGAATTTCCCAATAATTTTCAACCATTGGCCATTGTACCTCACACTTTCTCTGTTCATCCCATCGACAGCTGTCTCCTCCTACTTCCTTCAAACATTTTTTTGTGCTGAACTTGTCTTTTTGTTATGCGGATTGAGGTATTGCGGGTACACCTACGCCTCTCTTCTCACACTCAAGTTCTCAATCATTGAAAGAACTCAACAGCTGATAAGAAAAATCAAAATCGGAGCAAAAGAAGCATCTCTGATTTCATTTCCGTTGTGTGAAAAGAGAAGCAAGTGAAACAAAACAATAAAAACATTATTATTGTTATTATTCTACCTCTTTTCTAAGCTTGTACTGCAAAAAATCCAGTTTTACTTTCTAAAGGTACTAGTCATATTCTTCAATACAAACGATTTTTTATCTCATTTTGATTAATGCGGTGATAAAATCGACACTATCATTTGACGATGTACCTCTCTCTCTCTCTCTCTCTCT</canonical>
            <polymorphic>TTGACGATTTGAGTGAGCTCATAGCAACCCAAAAGTAGGGTCTGAAAAATGTGTTTCACTAGCCTGTTTCACTGAAAGATTTTGACCCAATTTGTGAAGTTCAGATTTTTTTCTTAGCAGTTTTGGATAAGTACGCGCTGAAATTACAATTTGAAACCTGTAAAATAAAAAGAAACAAATCCTTCAAATTTCAAGAAAAAAAGGACAAATATTAAGTACTTTTTAGACCCTCATAATTGGCAACTTTCGACTAATTTTAGCTCGTAAACAGTTAAATATGCTGCCCCAATTAACTCTCACATTTAAACCAATTTATCTCGGTTCCTGTGAAAAGTATCAAAAACTGGTTAACAAAAAAAAATATAGATAATTTGACGGAAAATATTTTATCAGTTGATAGACTTTTGATATTTCTTCCAGGAAATGAGATACATGGCTTTGAAGATGACGGTTTGGGTGCCATTAGGATATTCTGGATTTTTGGTCCACACCACTAAATYTTTTCATAAACCGATGCCTCCAGAATTTCCCAATAATTTTCAACCATTGGCCATTGTACCTCACACTTTCTCTGTTCATCCCATCGACAGCTGTCTCCTCCTACTTCCTTCAAACATTTTTTTGTGCTGAACTTGTCTTTTTGTTATGCGGATTGAGGTATTGCGGGTACACCTACGCCTCTCTTCTCACACTCAAGTTCTCAATCATTGAAAGAACTCAACAGCTGATAAGAAAAATCAAAATCGGAGCAAAAGAAGCATCTCTGATTTCATTTCCGTTGTGTGAAAAGAGAAGCAAGTGAAACAAAACAATAAAAACATTATTATTGTTATTATTCTACCTCTTTTCTAAGCTTGTACTGCAAAAAATCCAGTTTTACTTTCTAAAGGTACTAGTCATATTCTTCAATACAAACGATTTTTTATCTCATTTTGATTAATGCGGTGATAAAATCGACACTATCATTTGACGATGTACCTCTCTCTCTCTCTCTCTCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTCGTAAACAGTTAAATATGC</pcr_primer_p1>
		<pcr_primer_p2>ACAGAGAAAGTGTGAGGTACAAT</pcr_primer_p2>
		<pcr_amplicon_size>317</pcr_amplicon_size>
		<canonical_amplicon>AGCTCGTAAACAGTTAAATATGCTGCCCCAATTAACTCTCACATTTAAACCAATTTATCTCGGTTCCTGTGAAAAGTATCAAAAACTGGTTAACAAAAAAAAATATAGATAATTTGACGGAAAATATTTTATCAGTTGATAGACTTTTGATATTTCTTCCAGGAAATGAGATACATGGCTTTGAAGATGACGGTTTGGGTGCCATTAGGATATTCTGGATTTTTGGTCCACACCACTAAATCTTTTCATAAACCGATGCCTCCAGAATTTCCCAATAATTTTCAACCATTGGCCATTGTACCTCACACTTTCTCTGT</canonical_amplicon>
		<polymorphic_amplicon>AGCTCGTAAACAGTTAAATATGCTGCCCCAATTAACTCTCACATTTAAACCAATTTATCTCGGTTCCTGTGAAAAGTATCAAAAACTGGTTAACAAAAAAAAATATAGATAATTTGACGGAAAATATTTTATCAGTTGATAGACTTTTGATATTTCTTCCAGGAAATGAGATACATGGCTTTGAAGATGACGGTTTGGGTGCCATTAGGATATTCTGGATTTTTGGTCCACACCACTAAATYTTTTCATAAACCGATGCCTCCAGAATTTCCCAATAATTTTCAACCATTGGCCATTGTACCTCACACTTTCTCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14359</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>73486</contig_pos>
        <strand>+</strand>
        <context>TTTGCATCAA[A/G]CCAAGATGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGACAAAACTCCGTTCCACACTCAATTGCAAGTTTGCCATTTTGCATCAA</left_flank>
        <right_flank>CCAAGATGTAAGTATAAGTGGTAATCTTCTAAAATTTCATACTTTTTCTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACTTCTCCAACGACCGAAATCGACCAAGCAGAGGAGGAAAATACAGAACCACCGCCGAAAAAGATTCGACAGGAACGGAAGTCGAAGAATCTCGGAACAACAGGTAAGAATATCTGAACTATAAATTGTATCTTCATAAACAACATTCAGAGCTCACCGCCAACGTCCTGAGAGTGTCTGAGGTCTCCGAAAAGGAGCAGTTCCGAATGGCTCTTCAAGAATCCGAAGATTCTCCTCTGATCTTAGCTATCTGCAACTATGAATGCTATGAAAGTTGTGAGAGTGTTAAGTTCGGAGATAGAGTCCAGATTGAAGCGGAAGTGATGAAGAAAAGTAAGTTCTCGATCAATATCTAGTATGCTGATAATTTATTCTGTTACAGATGATTCGAATGTGGTAACTAAAATTTGGATCGATAGGATTCTAAGAATCGACAAGGGCGTTTCCAGACAAAACTCCGTTCCACACTCAATTGCAAGTTTGCCATTTTGCATCAAGCCAAGATGTAAGTATAAGTGGTAATCTTCTAAAATTTCATACTTTTTCTTCAGTCATCCATGAACTCTCGGATGTGGAAATCAAAAAAACTGTTCTACAAGTAACAATTTTGAACGTGAAGTTTACCGTTTATAAAGGGTATGATAGTTATATAGTTCTAACATCCAGTATTACTATTTTTCAGTTGTCTGAATTGTCAGCATGCAATGAGAAAAGTAACAAAGGTTGCTTTCTGCCCCAAGTGTAAAAGAAGAAGGTGTCGAGATATGCCGTTTGGCAGGGTAACAGTTTCCAAAAAATTCGAAAATTGCAAATCACCTTTTTCCAGATGCGAGTCATGGATTTCTCTGGACAAATCTACGTCAGTTTGAGACCGGAAGTGATGGAAAAATTTTTGGATATTTTGGGATATACCGATCATATTTCGGGATATACCGATTGGGATGCATTCACCTGGCCAAGTGAACGGTATAATTTTTGTACCCCATGTATTATTTTTT</canonical>
            <polymorphic>CAACTTCTCCAACGACCGAAATCGACCAAGCAGAGGAGGAAAATACAGAACCACCGCCGAAAAAGATTCGACAGGAACGGAAGTCGAAGAATCTCGGAACAACAGGTAAGAATATCTGAACTATAAATTGTATCTTCATAAACAACATTCAGAGCTCACCGCCAACGTCCTGAGAGTGTCTGAGGTCTCCGAAAAGGAGCAGTTCCGAATGGCTCTTCAAGAATCCGAAGATTCTCCTCTGATCTTAGCTATCTGCAACTATGAATGCTATGAAAGTTGTGAGAGTGTTAAGTTCGGAGATAGAGTCCAGATTGAAGCGGAAGTGATGAAGAAAAGTAAGTTCTCGATCAATATCTAGTATGCTGATAATTTATTCTGTTACAGATGATTCGAATGTGGTAACTAAAATTTGGATCGATAGGATTCTAAGAATCGACAAGGGCGTTTCCAGACAAAACTCCGTTCCACACTCAATTGCAAGTTTGCCATTTTGCATCAARCCAAGATGTAAGTATAAGTGGTAATCTTCTAAAATTTCATACTTTTTCTTCAGTCATCCATGAACTCTCGGATGTGGAAATCAAAAAAACTGTTCTACAAGTAACAATTTTGAACGTGAAGTTTACCGTTTATAAAGGGTATGATAGTTATATAGTTCTAACATCCAGTATTACTATTTTTCAGTTGTCTGAATTGTCAGCATGCAATGAGAAAAGTAACAAAGGTTGCTTTCTGCCCCAAGTGTAAAAGAAGAAGGTGTCGAGATATGCCGTTTGGCAGGGTAACAGTTTCCAAAAAATTCGAAAATTGCAAATCACCTTTTTCCAGATGCGAGTCATGGATTTCTCTGGACAAATCTACGTCAGTTTGAGACCGGAAGTGATGGAAAAATTTTTGGATATTTTGGGATATACCGATCATATTTCGGGATATACCGATTGGGATGCATTCACCTGGCCAAGTGAACGGTATAATTTTTGTACCCCATGTATTATTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>457 252 154 58 43 36</canonical_bands>
                <polymorphic_bands>709 154 58 43 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAGTGATGAAGAAAAGTAAGTT</pcr_primer_p1>
		<pcr_primer_p2>GGATGACTGAAGAAAAAGTATGA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GGAAGTGATGAAGAAAAGTAAGTTCTCGATCAATATCTAGTATGCTGATAATTTATTCTGTTACAGATGATTCGAATGTGGTAACTAAAATTTGGATCGATAGGATTCTAAGAATCGACAAGGGCGTTTCCAGACAAAACTCCGTTCCACACTCAATTGCAAGTTTGCCATTTTGCATCAAGCCAAGATGTAAGTATAAGTGGTAATCTTCTAAAATTTCATACTTTTTCTTCAGTCATCC</canonical_amplicon>
		<polymorphic_amplicon>GGAAGTGATGAAGAAAAGTAAGTTCTCGATCAATATCTAGTATGCTGATAATTTATTCTGTTACAGATGATTCGAATGTGGTAACTAAAATTTGGATCGATAGGATTCTAAGAATCGACAAGGGCGTTTCCAGACAAAACTCCGTTCCACACTCAATTGCAAGTTTGCCATTTTGCATCAARCCAAGATGTAAGTATAAGTGGTAATCTTCTAAAATTTCATACTTTTTCTTCAGTCATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14360</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>73599</contig_pos>
        <strand>+</strand>
        <context>AACAATTTTG[A/G]ACGTGAAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACTCTCGGATGTGGAAATCAAAAAAACTGTTCTACAAGTAACAATTTTG</left_flank>
        <right_flank>ACGTGAAGTTTACCGTTTATAAAGGGTATGATAGTTATATAGTTCTAACA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTGAACTATAAATTGTATCTTCATAAACAACATTCAGAGCTCACCGCCAACGTCCTGAGAGTGTCTGAGGTCTCCGAAAAGGAGCAGTTCCGAATGGCTCTTCAAGAATCCGAAGATTCTCCTCTGATCTTAGCTATCTGCAACTATGAATGCTATGAAAGTTGTGAGAGTGTTAAGTTCGGAGATAGAGTCCAGATTGAAGCGGAAGTGATGAAGAAAAGTAAGTTCTCGATCAATATCTAGTATGCTGATAATTTATTCTGTTACAGATGATTCGAATGTGGTAACTAAAATTTGGATCGATAGGATTCTAAGAATCGACAAGGGCGTTTCCAGACAAAACTCCGTTCCACACTCAATTGCAAGTTTGCCATTTTGCATCAAGCCAAGATGTAAGTATAAGTGGTAATCTTCTAAAATTTCATACTTTTTCTTCAGTCATCCATGAACTCTCGGATGTGGAAATCAAAAAAACTGTTCTACAAGTAACAATTTTGAACGTGAAGTTTACCGTTTATAAAGGGTATGATAGTTATATAGTTCTAACATCCAGTATTACTATTTTTCAGTTGTCTGAATTGTCAGCATGCAATGAGAAAAGTAACAAAGGTTGCTTTCTGCCCCAAGTGTAAAAGAAGAAGGTGTCGAGATATGCCGTTTGGCAGGGTAACAGTTTCCAAAAAATTCGAAAATTGCAAATCACCTTTTTCCAGATGCGAGTCATGGATTTCTCTGGACAAATCTACGTCAGTTTGAGACCGGAAGTGATGGAAAAATTTTTGGATATTTTGGGATATACCGATCATATTTCGGGATATACCGATTGGGATGCATTCACCTGGCCAAGTGAACGGTATAATTTTTGTACCCCATGTATTATTTTTTGACAAAAAATTTGCAGTGCCAACTATGTGTTCATATCATTCATGATGGAAATTGAAAAGAAATCAAATGAATGGGAATGCACTGATGTTGCTGAAATGGACTGGGCTGTCTAC</canonical>
            <polymorphic>ATCTGAACTATAAATTGTATCTTCATAAACAACATTCAGAGCTCACCGCCAACGTCCTGAGAGTGTCTGAGGTCTCCGAAAAGGAGCAGTTCCGAATGGCTCTTCAAGAATCCGAAGATTCTCCTCTGATCTTAGCTATCTGCAACTATGAATGCTATGAAAGTTGTGAGAGTGTTAAGTTCGGAGATAGAGTCCAGATTGAAGCGGAAGTGATGAAGAAAAGTAAGTTCTCGATCAATATCTAGTATGCTGATAATTTATTCTGTTACAGATGATTCGAATGTGGTAACTAAAATTTGGATCGATAGGATTCTAAGAATCGACAAGGGCGTTTCCAGACAAAACTCCGTTCCACACTCAATTGCAAGTTTGCCATTTTGCATCAAGCCAAGATGTAAGTATAAGTGGTAATCTTCTAAAATTTCATACTTTTTCTTCAGTCATCCATGAACTCTCGGATGTGGAAATCAAAAAAACTGTTCTACAAGTAACAATTTTGRACGTGAAGTTTACCGTTTATAAAGGGTATGATAGTTATATAGTTCTAACATCCAGTATTACTATTTTTCAGTTGTCTGAATTGTCAGCATGCAATGAGAAAAGTAACAAAGGTTGCTTTCTGCCCCAAGTGTAAAAGAAGAAGGTGTCGAGATATGCCGTTTGGCAGGGTAACAGTTTCCAAAAAATTCGAAAATTGCAAATCACCTTTTTCCAGATGCGAGTCATGGATTTCTCTGGACAAATCTACGTCAGTTTGAGACCGGAAGTGATGGAAAAATTTTTGGATATTTTGGGATATACCGATCATATTTCGGGATATACCGATTGGGATGCATTCACCTGGCCAAGTGAACGGTATAATTTTTGTACCCCATGTATTATTTTTTGACAAAAAATTTGCAGTGCCAACTATGTGTTCATATCATTCATGATGGAAATTGAAAAGAAATCAAATGAATGGGAATGCACTGATGTTGCTGAAATGGACTGGGCTGTCTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCATACTTTTTCTTCAGTCATC</pcr_primer_p1>
		<pcr_primer_p2>ATATCTCGACACCTTCTTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>TTTCATACTTTTTCTTCAGTCATCCATGAACTCTCGGATGTGGAAATCAAAAAAACTGTTCTACAAGTAACAATTTTGAACGTGAAGTTTACCGTTTATAAAGGGTATGATAGTTATATAGTTCTAACATCCAGTATTACTATTTTTCAGTTGTCTGAATTGTCAGCATGCAATGAGAAAAGTAACAAAGGTTGCTTTCTGCCCCAAGTGTAAAAGAAGAAGGTGTCGAGATAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCATACTTTTTCTTCAGTCATCCATGAACTCTCGGATGTGGAAATCAAAAAAACTGTTCTACAAGTAACAATTTTGRACGTGAAGTTTACCGTTTATAAAGGGTATGATAGTTATATAGTTCTAACATCCAGTATTACTATTTTTCAGTTGTCTGAATTGTCAGCATGCAATGAGAAAAGTAACAAAGGTTGCTTTCTGCCCCAAGTGTAAAAGAAGAAGGTGTCGAGATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14361</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>73653</contig_pos>
        <strand>+</strand>
        <context>TCTAACATCC[A/T]GTATTASTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAAGTTTACCGTTTATAAAGGGTATGATAGTTATATAGTTCTAACATCC</left_flank>
        <right_flank>GTATTACTATTTTTCAGTTGTCTGAATTGTCAGCATGCAATGAGAAAAGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTGAGAGTGTCTGAGGTCTCCGAAAAGGAGCAGTTCCGAATGGCTCTTCAAGAATCCGAAGATTCTCCTCTGATCTTAGCTATCTGCAACTATGAATGCTATGAAAGTTGTGAGAGTGTTAAGTTCGGAGATAGAGTCCAGATTGAAGCGGAAGTGATGAAGAAAAGTAAGTTCTCGATCAATATCTAGTATGCTGATAATTTATTCTGTTACAGATGATTCGAATGTGGTAACTAAAATTTGGATCGATAGGATTCTAAGAATCGACAAGGGCGTTTCCAGACAAAACTCCGTTCCACACTCAATTGCAAGTTTGCCATTTTGCATCAAGCCAAGATGTAAGTATAAGTGGTAATCTTCTAAAATTTCATACTTTTTCTTCAGTCATCCATGAACTCTCGGATGTGGAAATCAAAAAAACTGTTCTACAAGTAACAATTTTGAACGTGAAGTTTACCGTTTATAAAGGGTATGATAGTTATATAGTTCTAACATCCAGTATTACTATTTTTCAGTTGTCTGAATTGTCAGCATGCAATGAGAAAAGTAACAAAGGTTGCTTTCTGCCCCAAGTGTAAAAGAAGAAGGTGTCGAGATATGCCGTTTGGCAGGGTAACAGTTTCCAAAAAATTCGAAAATTGCAAATCACCTTTTTCCAGATGCGAGTCATGGATTTCTCTGGACAAATCTACGTCAGTTTGAGACCGGAAGTGATGGAAAAATTTTTGGATATTTTGGGATATACCGATCATATTTCGGGATATACCGATTGGGATGCATTCACCTGGCCAAGTGAACGGTATAATTTTTGTACCCCATGTATTATTTTTTGACAAAAAATTTGCAGTGCCAACTATGTGTTCATATCATTCATGATGGAAATTGAAAAGAAATCAAATGAATGGGAATGCACTGATGTTGCTGAAATGGACTGGGCTGTCTACGCAAAATATTTGAAGGAAAAGGTTGGTGAAGTACTATGATGACACAAAAAAAAT</canonical>
            <polymorphic>TCCTGAGAGTGTCTGAGGTCTCCGAAAAGGAGCAGTTCCGAATGGCTCTTCAAGAATCCGAAGATTCTCCTCTGATCTTAGCTATCTGCAACTATGAATGCTATGAAAGTTGTGAGAGTGTTAAGTTCGGAGATAGAGTCCAGATTGAAGCGGAAGTGATGAAGAAAAGTAAGTTCTCGATCAATATCTAGTATGCTGATAATTTATTCTGTTACAGATGATTCGAATGTGGTAACTAAAATTTGGATCGATAGGATTCTAAGAATCGACAAGGGCGTTTCCAGACAAAACTCCGTTCCACACTCAATTGCAAGTTTGCCATTTTGCATCAAGCCAAGATGTAAGTATAAGTGGTAATCTTCTAAAATTTCATACTTTTTCTTCAGTCATCCATGAACTCTCGGATGTGGAAATCAAAAAAACTGTTCTACAAGTAACAATTTTGAACGTGAAGTTTACCGTTTATAAAGGGTATGATAGTTATATAGTTCTAACATCCWGTATTACTATTTTTCAGTTGTCTGAATTGTCAGCATGCAATGAGAAAAGTAACAAAGGTTGCTTTCTGCCCCAAGTGTAAAAGAAGAAGGTGTCGAGATATGCCGTTTGGCAGGGTAACAGTTTCCAAAAAATTCGAAAATTGCAAATCACCTTTTTCCAGATGCGAGTCATGGATTTCTCTGGACAAATCTACGTCAGTTTGAGACCGGAAGTGATGGAAAAATTTTTGGATATTTTGGGATATACCGATCATATTTCGGGATATACCGATTGGGATGCATTCACCTGGCCAAGTGAACGGTATAATTTTTGTACCCCATGTATTATTTTTTGACAAAAAATTTGCAGTGCCAACTATGTGTTCATATCATTCATGATGGAAATTGAAAAGAAATCAAATGAATGGGAATGCACTGATGTTGCTGAAATGGACTGGGCTGTCTACGCAAAATATTTGAAGGAAAAGGTTGGTGAAGTACTATGATGACACAAAAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCATACTTTTTCTTCAGTCATC</pcr_primer_p1>
		<pcr_primer_p2>ATATCTCGACACCTTCTTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>TTTCATACTTTTTCTTCAGTCATCCATGAACTCTCGGATGTGGAAATCAAAAAAACTGTTCTACAAGTAACAATTTTGAACGTGAAGTTTACCGTTTATAAAGGGTATGATAGTTATATAGTTCTAACATCCAGTATTACTATTTTTCAGTTGTCTGAATTGTCAGCATGCAATGAGAAAAGTAACAAAGGTTGCTTTCTGCCCCAAGTGTAAAAGAAGAAGGTGTCGAGATAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCATACTTTTTCTTCAGTCATCCATGAACTCTCGGATGTGGAAATCAAAAAAACTGTTCTACAAGTAACAATTTTGAACGTGAAGTTTACCGTTTATAAAGGGTATGATAGTTATATAGTTCTAACATCCWGTATTACTATTTTTCAGTTGTCTGAATTGTCAGCATGCAATGAGAAAAGTAACAAAGGTTGCTTTCTGCCCCAAGTGTAAAAGAAGAAGGTGTCGAGATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14362</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>73660</contig_pos>
        <strand>+</strand>
        <context>TCCWGTATTA[C/G]TATTTTTCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TACCGTTTATAAAGGGTATGATAGTTATATAGTTCTAACATCCAGTATTA</left_flank>
        <right_flank>TATTTTTCAGTTGTCTGAATTGTCAGCATGCAATGAGAAAAGTAACAAAG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGTCTGAGGTCTCCGAAAAGGAGCAGTTCCGAATGGCTCTTCAAGAATCCGAAGATTCTCCTCTGATCTTAGCTATCTGCAACTATGAATGCTATGAAAGTTGTGAGAGTGTTAAGTTCGGAGATAGAGTCCAGATTGAAGCGGAAGTGATGAAGAAAAGTAAGTTCTCGATCAATATCTAGTATGCTGATAATTTATTCTGTTACAGATGATTCGAATGTGGTAACTAAAATTTGGATCGATAGGATTCTAAGAATCGACAAGGGCGTTTCCAGACAAAACTCCGTTCCACACTCAATTGCAAGTTTGCCATTTTGCATCAAGCCAAGATGTAAGTATAAGTGGTAATCTTCTAAAATTTCATACTTTTTCTTCAGTCATCCATGAACTCTCGGATGTGGAAATCAAAAAAACTGTTCTACAAGTAACAATTTTGAACGTGAAGTTTACCGTTTATAAAGGGTATGATAGTTATATAGTTCTAACATCCAGTATTACTATTTTTCAGTTGTCTGAATTGTCAGCATGCAATGAGAAAAGTAACAAAGGTTGCTTTCTGCCCCAAGTGTAAAAGAAGAAGGTGTCGAGATATGCCGTTTGGCAGGGTAACAGTTTCCAAAAAATTCGAAAATTGCAAATCACCTTTTTCCAGATGCGAGTCATGGATTTCTCTGGACAAATCTACGTCAGTTTGAGACCGGAAGTGATGGAAAAATTTTTGGATATTTTGGGATATACCGATCATATTTCGGGATATACCGATTGGGATGCATTCACCTGGCCAAGTGAACGGTATAATTTTTGTACCCCATGTATTATTTTTTGACAAAAAATTTGCAGTGCCAACTATGTGTTCATATCATTCATGATGGAAATTGAAAAGAAATCAAATGAATGGGAATGCACTGATGTTGCTGAAATGGACTGGGCTGTCTACGCAAAATATTTGAAGGAAAAGGTTGGTGAAGTACTATGATGACACAAAAAAAATCGGAGCT</canonical>
            <polymorphic>AGTGTCTGAGGTCTCCGAAAAGGAGCAGTTCCGAATGGCTCTTCAAGAATCCGAAGATTCTCCTCTGATCTTAGCTATCTGCAACTATGAATGCTATGAAAGTTGTGAGAGTGTTAAGTTCGGAGATAGAGTCCAGATTGAAGCGGAAGTGATGAAGAAAAGTAAGTTCTCGATCAATATCTAGTATGCTGATAATTTATTCTGTTACAGATGATTCGAATGTGGTAACTAAAATTTGGATCGATAGGATTCTAAGAATCGACAAGGGCGTTTCCAGACAAAACTCCGTTCCACACTCAATTGCAAGTTTGCCATTTTGCATCAAGCCAAGATGTAAGTATAAGTGGTAATCTTCTAAAATTTCATACTTTTTCTTCAGTCATCCATGAACTCTCGGATGTGGAAATCAAAAAAACTGTTCTACAAGTAACAATTTTGAACGTGAAGTTTACCGTTTATAAAGGGTATGATAGTTATATAGTTCTAACATCCAGTATTASTATTTTTCAGTTGTCTGAATTGTCAGCATGCAATGAGAAAAGTAACAAAGGTTGCTTTCTGCCCCAAGTGTAAAAGAAGAAGGTGTCGAGATATGCCGTTTGGCAGGGTAACAGTTTCCAAAAAATTCGAAAATTGCAAATCACCTTTTTCCAGATGCGAGTCATGGATTTCTCTGGACAAATCTACGTCAGTTTGAGACCGGAAGTGATGGAAAAATTTTTGGATATTTTGGGATATACCGATCATATTTCGGGATATACCGATTGGGATGCATTCACCTGGCCAAGTGAACGGTATAATTTTTGTACCCCATGTATTATTTTTTGACAAAAAATTTGCAGTGCCAACTATGTGTTCATATCATTCATGATGGAAATTGAAAAGAAATCAAATGAATGGGAATGCACTGATGTTGCTGAAATGGACTGGGCTGTCTACGCAAAATATTTGAAGGAAAAGGTTGGTGAAGTACTATGATGACACAAAAAAAATCGGAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCATACTTTTTCTTCAGTCATC</pcr_primer_p1>
		<pcr_primer_p2>ATATCTCGACACCTTCTTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>TTTCATACTTTTTCTTCAGTCATCCATGAACTCTCGGATGTGGAAATCAAAAAAACTGTTCTACAAGTAACAATTTTGAACGTGAAGTTTACCGTTTATAAAGGGTATGATAGTTATATAGTTCTAACATCCAGTATTACTATTTTTCAGTTGTCTGAATTGTCAGCATGCAATGAGAAAAGTAACAAAGGTTGCTTTCTGCCCCAAGTGTAAAAGAAGAAGGTGTCGAGATAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCATACTTTTTCTTCAGTCATCCATGAACTCTCGGATGTGGAAATCAAAAAAACTGTTCTACAAGTAACAATTTTGAACGTGAAGTTTACCGTTTATAAAGGGTATGATAGTTATATAGTTCTAACATCCAGTATTASTATTTTTCAGTTGTCTGAATTGTCAGCATGCAATGAGAAAAGTAACAAAGGTTGCTTTCTGCCCCAAGTGTAAAAGAAGAAGGTGTCGAGATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14363</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>77226</contig_pos>
        <strand>+</strand>
        <context>GAAGCGTCAT[A/T]TCGCAGGTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCAT</left_flank>
        <right_flank>TCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAATTTGAGTAAGTTTATCAAACGTTTAAATACGCTCTAAAAACTTTTTTTGCAGTCATGGACACGATTAATCATAGAAATAACAAGGCAGTAGCTCTTGAAATCGGAGCTGTCTTTTCGCCAAAGCCGTTGAGAGACGAAAACGAGAGTGTTGCCGCGTTCAGTTTTGAAGATGCGTGTGGTCCTGCACTACCGAACAAAGCGTCTATCTGGGAGTCGGACGGCAAAAATCTGGAGGAGAGTGACAAAGTGGGAAAGTCGAAATCAGGAAGCGGACAGGGTTCACCCTTGGGTACGCCACCACCCGGATCTCCAATTCGACACAATATGCTTGTTGAGGGTAAGTTGAATTTTTTTTGGTTTTTTTTTGTTAAGAGTCTTAACTCAGGAACATTTTTGTCAAAAAAAAACTCGAAATCGAAAAATTTGCACATGCGCTCGAGTTGAAT</canonical>
            <polymorphic>TTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATWTCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAATTTGAGTAAGTTTATCAAACGTTTAAATACGCTCTAAAAACTTTTTTTGCAGTCATGGACACGATTAATCATAGAAATAACAAGGCAGTAGCTCTTGAAATCGGAGCTGTCTTTTCGCCAAAGCCGTTGAGAGACGAAAACGAGAGTGTTGCCGCGTTCAGTTTTGAAGATGCGTGTGGTCCTGCACTACCGAACAAAGCGTCTATCTGGGAGTCGGACGGCAAAAATCTGGAGGAGAGTGACAAAGTGGGAAAGTCGAAATCAGGAAGCGGACAGGGTTCACCCTTGGGTACGCCACCACCCGGATCTCCAATTCGACACAATATGCTTGTTGAGGGTAAGTTGAATTTTTTTTGGTTTTTTTTTGTTAAGAGTCTTAACTCAGGAACATTTTTGTCAAAAAAAAACTCGAAATCGAAAAATTTGCACATGCGCTCGAGTTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGATGAAGTCAATACTTCTGA</pcr_primer_p1>
		<pcr_primer_p2>GCTACTGCCTTGTTATTTCTATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAATTTGAGTAAGTTTATCAAACGTTTAAATACGCTCTAAAAACTTTTTTTGCAGTCATGGACACGATTAATCATAGAAATAACAAGGCAGTAGC</canonical_amplicon>
		<polymorphic_amplicon>GGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATWTCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAATTTGAGTAAGTTTATCAAACGTTTAAATACGCTCTAAAAACTTTTTTTGCAGTCATGGACACGATTAATCATAGAAATAACAAGGCAGTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14364</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>77201</contig_pos>
        <strand>+</strand>
        <context>GGATAGTCAA[A/G]CATCCAGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAA</left_flank>
        <right_flank>CATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAATTTGAGTAAGTTTATCAAACGTTTAAATACGCTCTAAAAACTTTTTTTGCAGTCATGGACACGATTAATCATAGAAATAACAAGGCAGTAGCTCTTGAAATCGGAGCTGTCTTTTCGCCAAAGCCGTTGAGAGACGAAAACGAGAGTGTTGCCGCGTTCAGTTTTGAAGATGCGTGTGGTCCTGCACTACCGAACAAAGCGTCTATCTGGGAGTCGGACGGCAAAAATCTGGAGGAGAGTGACAAAGTGGGAAAGTCGAAATCAGGAAGCGGACAGGGTTCACCCTTGGGTACGCCACCACCCGGATCTCCAATTCGACACAATATGCTTGTTGAGGGTAAGTTGAATTTTTTTTGGTTTTTTTTTGTTAAGAGTCTTAACTCAGGAACATTTTTGTCAAAAAAAAACTCGAAATCGAAAA</canonical>
            <polymorphic>GAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAARCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAATTTGAGTAAGTTTATCAAACGTTTAAATACGCTCTAAAAACTTTTTTTGCAGTCATGGACACGATTAATCATAGAAATAACAAGGCAGTAGCTCTTGAAATCGGAGCTGTCTTTTCGCCAAAGCCGTTGAGAGACGAAAACGAGAGTGTTGCCGCGTTCAGTTTTGAAGATGCGTGTGGTCCTGCACTACCGAACAAAGCGTCTATCTGGGAGTCGGACGGCAAAAATCTGGAGGAGAGTGACAAAGTGGGAAAGTCGAAATCAGGAAGCGGACAGGGTTCACCCTTGGGTACGCCACCACCCGGATCTCCAATTCGACACAATATGCTTGTTGAGGGTAAGTTGAATTTTTTTTGGTTTTTTTTTGTTAAGAGTCTTAACTCAGGAACATTTTTGTCAAAAAAAAACTCGAAATCGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGATGAAGTCAATACTTCTGA</pcr_primer_p1>
		<pcr_primer_p2>GCTACTGCCTTGTTATTTCTATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAATTTGAGTAAGTTTATCAAACGTTTAAATACGCTCTAAAAACTTTTTTTGCAGTCATGGACACGATTAATCATAGAAATAACAAGGCAGTAGC</canonical_amplicon>
		<polymorphic_amplicon>GGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAARCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAATTTGAGTAAGTTTATCAAACGTTTAAATACGCTCTAAAAACTTTTTTTGCAGTCATGGACACGATTAATCATAGAAATAACAAGGCAGTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14365</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>77184</contig_pos>
        <strand>+</strand>
        <context>ACATCTTCAA[C/T]GTCTCCGGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAA</left_flank>
        <right_flank>GTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGGTAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAATTTGAGTAAGTTTATCAAACGTTTAAATACGCTCTAAAAACTTTTTTTGCAGTCATGGACACGATTAATCATAGAAATAACAAGGCAGTAGCTCTTGAAATCGGAGCTGTCTTTTCGCCAAAGCCGTTGAGAGACGAAAACGAGAGTGTTGCCGCGTTCAGTTTTGAAGATGCGTGTGGTCCTGCACTACCGAACAAAGCGTCTATCTGGGAGTCGGACGGCAAAAATCTGGAGGAGAGTGACAAAGTGGGAAAGTCGAAATCAGGAAGCGGACAGGGTTCACCCTTGGGTACGCCACCACCCGGATCTCCAATTCGACACAATATGCTTGTTGAGGGTAAGTTGAATTTTTTTTGGTTTTTTTTTGTTAAGAGTCTTAACTCAGGAACATTTTTGTCAAAAAA</canonical>
            <polymorphic>TGAGGTAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAAYGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAATTTGAGTAAGTTTATCAAACGTTTAAATACGCTCTAAAAACTTTTTTTGCAGTCATGGACACGATTAATCATAGAAATAACAAGGCAGTAGCTCTTGAAATCGGAGCTGTCTTTTCGCCAAAGCCGTTGAGAGACGAAAACGAGAGTGTTGCCGCGTTCAGTTTTGAAGATGCGTGTGGTCCTGCACTACCGAACAAAGCGTCTATCTGGGAGTCGGACGGCAAAAATCTGGAGGAGAGTGACAAAGTGGGAAAGTCGAAATCAGGAAGCGGACAGGGTTCACCCTTGGGTACGCCACCACCCGGATCTCCAATTCGACACAATATGCTTGTTGAGGGTAAGTTGAATTTTTTTTGGTTTTTTTTTGTTAAGAGTCTTAACTCAGGAACATTTTTGTCAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>385 221 112 106 89 60 27</canonical_bands>
                <polymorphic_bands>385 221 201 106 60 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGATGAAGTCAATACTTCTGA</pcr_primer_p1>
		<pcr_primer_p2>GCTACTGCCTTGTTATTTCTATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAATTTGAGTAAGTTTATCAAACGTTTAAATACGCTCTAAAAACTTTTTTTGCAGTCATGGACACGATTAATCATAGAAATAACAAGGCAGTAGC</canonical_amplicon>
		<polymorphic_amplicon>GGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAAYGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAATTTGAGTAAGTTTATCAAACGTTTAAATACGCTCTAAAAACTTTTTTTGCAGTCATGGACACGATTAATCATAGAAATAACAAGGCAGTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14366</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>77157</contig_pos>
        <strand>+</strand>
        <context>TCTACAACTA[A/C]CAAGCGCAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTA</left_flank>
        <right_flank>CAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCCACTAGAAACGATTCCAGACGTTTTGAGGTAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAATTTGAGTAAGTTTATCAAACGTTTAAATACGCTCTAAAAACTTTTTTTGCAGTCATGGACACGATTAATCATAGAAATAACAAGGCAGTAGCTCTTGAAATCGGAGCTGTCTTTTCGCCAAAGCCGTTGAGAGACGAAAACGAGAGTGTTGCCGCGTTCAGTTTTGAAGATGCGTGTGGTCCTGCACTACCGAACAAAGCGTCTATCTGGGAGTCGGACGGCAAAAATCTGGAGGAGAGTGACAAAGTGGGAAAGTCGAAATCAGGAAGCGGACAGGGTTCACCCTTGGGTACGCCACCACCCGGATCTCCAATTCGACACAATATGCTTGTTGAGGGTAAGTTGAATTTTTTTTGGTTTTTTTTTGTTAAGAGTCT</canonical>
            <polymorphic>CGCCACTAGAAACGATTCCAGACGTTTTGAGGTAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTAMCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAATTTGAGTAAGTTTATCAAACGTTTAAATACGCTCTAAAAACTTTTTTTGCAGTCATGGACACGATTAATCATAGAAATAACAAGGCAGTAGCTCTTGAAATCGGAGCTGTCTTTTCGCCAAAGCCGTTGAGAGACGAAAACGAGAGTGTTGCCGCGTTCAGTTTTGAAGATGCGTGTGGTCCTGCACTACCGAACAAAGCGTCTATCTGGGAGTCGGACGGCAAAAATCTGGAGGAGAGTGACAAAGTGGGAAAGTCGAAATCAGGAAGCGGACAGGGTTCACCCTTGGGTACGCCACCACCCGGATCTCCAATTCGACACAATATGCTTGTTGAGGGTAAGTTGAATTTTTTTTGGTTTTTTTTTGTTAAGAGTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAGCCAAAAGAAGTGAT</pcr_primer_p1>
		<pcr_primer_p2>AACGTCTCAATTGCTTTGTTAC</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTAMCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14367</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>77087</contig_pos>
        <strand>+</strand>
        <context>CGACAAATCT[C/T]GTACGCGTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCT</left_flank>
        <right_flank>GTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCCGTCCAACAGCAACAGCAACAGCAACAAGACTCAATCATCCAGAGATAGAGAAATCCGCCGTAACACCGCCACTAGAAACGATTCCAGACGTTTTGAGGTAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAATTTGAGTAAGTTTATCAAACGTTTAAATACGCTCTAAAAACTTTTTTTGCAGTCATGGACACGATTAATCATAGAAATAACAAGGCAGTAGCTCTTGAAATCGGAGCTGTCTTTTCGCCAAAGCCGTTGAGAGACGAAAACGAGAGTGTTGCCGCGTTCAGTTTTGAAGATGCGTGTGGTCCTGCACTACCGAACAAAGCGTCTATCTGGGAGTCGGACGGCAAAAATCTGGAGGAGAGTGACAAAGTGGGAAAGTCGAAATCAGGAAGCGGACAGGGTTCACCCTTGGGTACGCCACCACCCGGAT</canonical>
            <polymorphic>AGCCGTCCAACAGCAACAGCAACAGCAACAAGACTCAATCATCCAGAGATAGAGAAATCCGCCGTAACACCGCCACTAGAAACGATTCCAGACGTTTTGAGGTAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTYGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAATTTGAGTAAGTTTATCAAACGTTTAAATACGCTCTAAAAACTTTTTTTGCAGTCATGGACACGATTAATCATAGAAATAACAAGGCAGTAGCTCTTGAAATCGGAGCTGTCTTTTCGCCAAAGCCGTTGAGAGACGAAAACGAGAGTGTTGCCGCGTTCAGTTTTGAAGATGCGTGTGGTCCTGCACTACCGAACAAAGCGTCTATCTGGGAGTCGGACGGCAAAAATCTGGAGGAGAGTGACAAAGTGGGAAAGTCGAAATCAGGAAGCGGACAGGGTTCACCCTTGGGTACGCCACCACCCGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGTACG</site>
                <isoschizomers>
                    <enzyme>BsiWI</enzyme>
                    <enzyme>Pfl23II</enzyme>
                    <enzyme>PspLI</enzyme>
                    <enzyme>SplI</enzyme>
                    <enzyme>SunI</enzyme>
                </isoschizomers>
                <canonical_bands>500 300 200</canonical_bands>
                <polymorphic_bands>800 200</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAGCCAAAAGAAGTGAT</pcr_primer_p1>
		<pcr_primer_p2>AACGTCTCAATTGCTTTGTTAC</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTYGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14368</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>77059</contig_pos>
        <strand>+</strand>
        <context>ACCGCCATYG[G/T]GAAAACCGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTG</left_flank>
        <right_flank>GAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGAAGAAAACTATTCTTGCTTTTAGAAGCCGTCCAACAGCAACAGCAACAGCAACAAGACTCAATCATCCAGAGATAGAGAAATCCGCCGTAACACCGCCACTAGAAACGATTCCAGACGTTTTGAGGTAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAATTTGAGTAAGTTTATCAAACGTTTAAATACGCTCTAAAAACTTTTTTTGCAGTCATGGACACGATTAATCATAGAAATAACAAGGCAGTAGCTCTTGAAATCGGAGCTGTCTTTTCGCCAAAGCCGTTGAGAGACGAAAACGAGAGTGTTGCCGCGTTCAGTTTTGAAGATGCGTGTGGTCCTGCACTACCGAACAAAGCGTCTATCTGGGAGTCGGACGGCAAAAATCTGGAGGAGAGTGACAAAGTGGGAAAGTCGAAATCAGGAAGCGGACAGGGT</canonical>
            <polymorphic>AGAGAAGAAAACTATTCTTGCTTTTAGAAGCCGTCCAACAGCAACAGCAACAGCAACAAGACTCAATCATCCAGAGATAGAGAAATCCGCCGTAACACCGCCACTAGAAACGATTCCAGACGTTTTGAGGTAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGKGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAATTTGAGTAAGTTTATCAAACGTTTAAATACGCTCTAAAAACTTTTTTTGCAGTCATGGACACGATTAATCATAGAAATAACAAGGCAGTAGCTCTTGAAATCGGAGCTGTCTTTTCGCCAAAGCCGTTGAGAGACGAAAACGAGAGTGTTGCCGCGTTCAGTTTTGAAGATGCGTGTGGTCCTGCACTACCGAACAAAGCGTCTATCTGGGAGTCGGACGGCAAAAATCTGGAGGAGAGTGACAAAGTGGGAAAGTCGAAATCAGGAAGCGGACAGGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>167 97 95 87 86 70 70 55 44 30 28 28 24 22 18 16 15 9 9 8 8 6 3 3 2</canonical_bands>
                <polymorphic_bands>167 97 95 87 86 70 70 55 44 40 30 28 28 22 18 15 9 9 8 8 6 3 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGACAATTTTGGAAACGTC</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGATGTGTCACGACTG</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>CTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>CTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGKGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14369</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>77057</contig_pos>
        <strand>+</strand>
        <context>AGACCGCCAT[C/T]GKGAAAACCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCAT</left_flank>
        <right_flank>GTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGAGAAGAAAACTATTCTTGCTTTTAGAAGCCGTCCAACAGCAACAGCAACAGCAACAAGACTCAATCATCCAGAGATAGAGAAATCCGCCGTAACACCGCCACTAGAAACGATTCCAGACGTTTTGAGGTAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAATTTGAGTAAGTTTATCAAACGTTTAAATACGCTCTAAAAACTTTTTTTGCAGTCATGGACACGATTAATCATAGAAATAACAAGGCAGTAGCTCTTGAAATCGGAGCTGTCTTTTCGCCAAAGCCGTTGAGAGACGAAAACGAGAGTGTTGCCGCGTTCAGTTTTGAAGATGCGTGTGGTCCTGCACTACCGAACAAAGCGTCTATCTGGGAGTCGGACGGCAAAAATCTGGAGGAGAGTGACAAAGTGGGAAAGTCGAAATCAGGAAGCGGACAGG</canonical>
            <polymorphic>TTAGAGAAGAAAACTATTCTTGCTTTTAGAAGCCGTCCAACAGCAACAGCAACAGCAACAAGACTCAATCATCCAGAGATAGAGAAATCCGCCGTAACACCGCCACTAGAAACGATTCCAGACGTTTTGAGGTAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATYGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAATTTGAGTAAGTTTATCAAACGTTTAAATACGCTCTAAAAACTTTTTTTGCAGTCATGGACACGATTAATCATAGAAATAACAAGGCAGTAGCTCTTGAAATCGGAGCTGTCTTTTCGCCAAAGCCGTTGAGAGACGAAAACGAGAGTGTTGCCGCGTTCAGTTTTGAAGATGCGTGTGGTCCTGCACTACCGAACAAAGCGTCTATCTGGGAGTCGGACGGCAAAAATCTGGAGGAGAGTGACAAAGTGGGAAAGTCGAAATCAGGAAGCGGACAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGACAATTTTGGAAACGTC</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGATGTGTCACGACTG</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>CTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>CTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATYGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14370</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>77040</contig_pos>
        <strand>+</strand>
        <context>AGAAGTGATC[A/G]GGCTGAAGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATC</left_flank>
        <right_flank>GGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTATTCCTTGATTTTTTTAGAGAAGAAAACTATTCTTGCTTTTAGAAGCCGTCCAACAGCAACAGCAACAGCAACAAGACTCAATCATCCAGAGATAGAGAAATCCGCCGTAACACCGCCACTAGAAACGATTCCAGACGTTTTGAGGTAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAATTTGAGTAAGTTTATCAAACGTTTAAATACGCTCTAAAAACTTTTTTTGCAGTCATGGACACGATTAATCATAGAAATAACAAGGCAGTAGCTCTTGAAATCGGAGCTGTCTTTTCGCCAAAGCCGTTGAGAGACGAAAACGAGAGTGTTGCCGCGTTCAGTTTTGAAGATGCGTGTGGTCCTGCACTACCGAACAAAGCGTCTATCTGGGAGTCGGACGGCAAAAATCTGGAGGAGAGTGACAAAGTGGGAAAGTCGAA</canonical>
            <polymorphic>TTTATTCCTTGATTTTTTTAGAGAAGAAAACTATTCTTGCTTTTAGAAGCCGTCCAACAGCAACAGCAACAGCAACAAGACTCAATCATCCAGAGATAGAGAAATCCGCCGTAACACCGCCACTAGAAACGATTCCAGACGTTTTGAGGTAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCRGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAATTTGAGTAAGTTTATCAAACGTTTAAATACGCTCTAAAAACTTTTTTTGCAGTCATGGACACGATTAATCATAGAAATAACAAGGCAGTAGCTCTTGAAATCGGAGCTGTCTTTTCGCCAAAGCCGTTGAGAGACGAAAACGAGAGTGTTGCCGCGTTCAGTTTTGAAGATGCGTGTGGTCCTGCACTACCGAACAAAGCGTCTATCTGGGAGTCGGACGGCAAAAATCTGGAGGAGAGTGACAAAGTGGGAAAGTCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>505 357 138</canonical_bands>
                <polymorphic_bands>643 357</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGACAATTTTGGAAACGTC</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGATGTGTCACGACTG</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>CTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>CTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCRGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14371</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>76988</contig_pos>
        <strand>+</strand>
        <context>TCATTACCAC[C/G]AGGATCATCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCAC</left_flank>
        <right_flank>AGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGATGAGAGTCGTCAGTCGAGGTTCTCTGTTCGTCCGAACAATGATGTAAGTTTATTCCTTGATTTTTTTAGAGAAGAAAACTATTCTTGCTTTTAGAAGCCGTCCAACAGCAACAGCAACAGCAACAAGACTCAATCATCCAGAGATAGAGAAATCCGCCGTAACACCGCCACTAGAAACGATTCCAGACGTTTTGAGGTAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAATTTGAGTAAGTTTATCAAACGTTTAAATACGCTCTAAAAACTTTTTTTGCAGTCATGGACACGATTAATCATAGAAATAACAAGGCAGTAGCTCTTGAAATCGGAGCTGTCTTTTCGCCAAAGCCGTTGAGAGACGAAAACGAGAGTGTTGCCGCGTTCAGTTTTGAAGATGCGTGTGGTCCTGCACTACCGAACAAAGCGTCTATCT</canonical>
            <polymorphic>ACGATGAGAGTCGTCAGTCGAGGTTCTCTGTTCGTCCGAACAATGATGTAAGTTTATTCCTTGATTTTTTTAGAGAAGAAAACTATTCTTGCTTTTAGAAGCCGTCCAACAGCAACAGCAACAGCAACAAGACTCAATCATCCAGAGATAGAGAAATCCGCCGTAACACCGCCACTAGAAACGATTCCAGACGTTTTGAGGTAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACSAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAATTTGAGTAAGTTTATCAAACGTTTAAATACGCTCTAAAAACTTTTTTTGCAGTCATGGACACGATTAATCATAGAAATAACAAGGCAGTAGCTCTTGAAATCGGAGCTGTCTTTTCGCCAAAGCCGTTGAGAGACGAAAACGAGAGTGTTGCCGCGTTCAGTTTTGAAGATGCGTGTGGTCCTGCACTACCGAACAAAGCGTCTATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>500 277 223</canonical_bands>
                <polymorphic_bands>777 223</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>500 277 223</canonical_bands>
                <polymorphic_bands>777 223</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACAGGGATCAAAGTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>GTAGAATCAGAAGTATTGACTTCATC</pcr_primer_p2>
		<pcr_amplicon_size>308</pcr_amplicon_size>
		<canonical_amplicon>CACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTAC</canonical_amplicon>
		<polymorphic_amplicon>CACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACSAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14372</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>76918</contig_pos>
        <strand>+</strand>
        <context>ATGATCGTGA[A/C]AGTCATGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGA</left_flank>
        <right_flank>AGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTCCAGGTAATAACAATGAAATCTACTCATGAGAATCGCGACAGGAAGCGGAGATACAGCTCAAGTGACGATGAGAGTCGTCAGTCGAGGTTCTCTGTTCGTCCGAACAATGATGTAAGTTTATTCCTTGATTTTTTTAGAGAAGAAAACTATTCTTGCTTTTAGAAGCCGTCCAACAGCAACAGCAACAGCAACAAGACTCAATCATCCAGAGATAGAGAAATCCGCCGTAACACCGCCACTAGAAACGATTCCAGACGTTTTGAGGTAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAATTTGAGTAAGTTTATCAAACGTTTAAATACGCTCTAAAAACTTTTTTTGCAGTCATGGACACGATTAATCATAGAAATAACAAGGCAGTAGCTCTTGAAATCGGAGCTGTCTTTTCGCCAAAGCCGTTGAGAGACGAA</canonical>
            <polymorphic>TTTCTCCAGGTAATAACAATGAAATCTACTCATGAGAATCGCGACAGGAAGCGGAGATACAGCTCAAGTGACGATGAGAGTCGTCAGTCGAGGTTCTCTGTTCGTCCGAACAATGATGTAAGTTTATTCCTTGATTTTTTTAGAGAAGAAAACTATTCTTGCTTTTAGAAGCCGTCCAACAGCAACAGCAACAGCAACAAGACTCAATCATCCAGAGATAGAGAAATCCGCCGTAACACCGCCACTAGAAACGATTCCAGACGTTTTGAGGTAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAMAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAATTTGAGTAAGTTTATCAAACGTTTAAATACGCTCTAAAAACTTTTTTTGCAGTCATGGACACGATTAATCATAGAAATAACAAGGCAGTAGCTCTTGAAATCGGAGCTGTCTTTTCGCCAAAGCCGTTGAGAGACGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTTCAGTCAGTCGGAAATC</pcr_primer_p1>
		<pcr_primer_p2>GATCACTTCTTTTGGCTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATC</canonical_amplicon>
		<polymorphic_amplicon>ATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAMAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14373</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>76872</contig_pos>
        <strand>+</strand>
        <context>AGGCRRAAAT[C/T]TCCGTACTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAAT</left_flank>
        <right_flank>TCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTATATTTTTTTTCCTTCCTCGTCGTTATTTAAGAATCGAAATTGTTTCTCCAGGTAATAACAATGAAATCTACTCATGAGAATCGCGACAGGAAGCGGAGATACAGCTCAAGTGACGATGAGAGTCGTCAGTCGAGGTTCTCTGTTCGTCCGAACAATGATGTAAGTTTATTCCTTGATTTTTTTAGAGAAGAAAACTATTCTTGCTTTTAGAAGCCGTCCAACAGCAACAGCAACAGCAACAAGACTCAATCATCCAGAGATAGAGAAATCCGCCGTAACACCGCCACTAGAAACGATTCCAGACGTTTTGAGGTAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAATTTGAGTAAGTTTATCAAACGTTTAAATACGCTCTAAAAACTTTTTTTGCAGTCATGGACACGATTAATCATAGAAATAACAAGGCAGTAGC</canonical>
            <polymorphic>CTTATATTTTTTTTCCTTCCTCGTCGTTATTTAAGAATCGAAATTGTTTCTCCAGGTAATAACAATGAAATCTACTCATGAGAATCGCGACAGGAAGCGGAGATACAGCTCAAGTGACGATGAGAGTCGTCAGTCGAGGTTCTCTGTTCGTCCGAACAATGATGTAAGTTTATTCCTTGATTTTTTTAGAGAAGAAAACTATTCTTGCTTTTAGAAGCCGTCCAACAGCAACAGCAACAGCAACAAGACTCAATCATCCAGAGATAGAGAAATCCGCCGTAACACCGCCACTAGAAACGATTCCAGACGTTTTGAGGTAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATYTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAATTTGAGTAAGTTTATCAAACGTTTAAATACGCTCTAAAAACTTTTTTTGCAGTCATGGACACGATTAATCATAGAAATAACAAGGCAGTAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATTTCATCCGAAAAGGTC</pcr_primer_p1>
		<pcr_primer_p2>CGATATGATGATTTCTCATGACT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCG</canonical_amplicon>
		<polymorphic_amplicon>TAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATYTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14374</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>76867</contig_pos>
        <strand>+</strand>
        <context>GTTTCAGGCR[A/G]AAATYTCCGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCG</left_flank>
        <right_flank>AAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTTCTTATATTTTTTTTCCTTCCTCGTCGTTATTTAAGAATCGAAATTGTTTCTCCAGGTAATAACAATGAAATCTACTCATGAGAATCGCGACAGGAAGCGGAGATACAGCTCAAGTGACGATGAGAGTCGTCAGTCGAGGTTCTCTGTTCGTCCGAACAATGATGTAAGTTTATTCCTTGATTTTTTTAGAGAAGAAAACTATTCTTGCTTTTAGAAGCCGTCCAACAGCAACAGCAACAGCAACAAGACTCAATCATCCAGAGATAGAGAAATCCGCCGTAACACCGCCACTAGAAACGATTCCAGACGTTTTGAGGTAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAATTTGAGTAAGTTTATCAAACGTTTAAATACGCTCTAAAAACTTTTTTTGCAGTCATGGACACGATTAATCATAGAAATAACAAGGCA</canonical>
            <polymorphic>TCTTTCTTATATTTTTTTTCCTTCCTCGTCGTTATTTAAGAATCGAAATTGTTTCTCCAGGTAATAACAATGAAATCTACTCATGAGAATCGCGACAGGAAGCGGAGATACAGCTCAAGTGACGATGAGAGTCGTCAGTCGAGGTTCTCTGTTCGTCCGAACAATGATGTAAGTTTATTCCTTGATTTTTTTAGAGAAGAAAACTATTCTTGCTTTTAGAAGCCGTCCAACAGCAACAGCAACAGCAACAAGACTCAATCATCCAGAGATAGAGAAATCCGCCGTAACACCGCCACTAGAAACGATTCCAGACGTTTTGAGGTAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGRAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAATTTGAGTAAGTTTATCAAACGTTTAAATACGCTCTAAAAACTTTTTTTGCAGTCATGGACACGATTAATCATAGAAATAACAAGGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATTTCATCCGAAAAGGTC</pcr_primer_p1>
		<pcr_primer_p2>CGATATGATGATTTCTCATGACT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCG</canonical_amplicon>
		<polymorphic_amplicon>TAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGRAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14375</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>76866</contig_pos>
        <strand>+</strand>
        <context>AGTTTCAGGC[A/G]RAAATYTCCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGC</left_flank>
        <right_flank>AAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTTCTTATATTTTTTTTCCTTCCTCGTCGTTATTTAAGAATCGAAATTGTTTCTCCAGGTAATAACAATGAAATCTACTCATGAGAATCGCGACAGGAAGCGGAGATACAGCTCAAGTGACGATGAGAGTCGTCAGTCGAGGTTCTCTGTTCGTCCGAACAATGATGTAAGTTTATTCCTTGATTTTTTTAGAGAAGAAAACTATTCTTGCTTTTAGAAGCCGTCCAACAGCAACAGCAACAGCAACAAGACTCAATCATCCAGAGATAGAGAAATCCGCCGTAACACCGCCACTAGAAACGATTCCAGACGTTTTGAGGTAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAATTTGAGTAAGTTTATCAAACGTTTAAATACGCTCTAAAAACTTTTTTTGCAGTCATGGACACGATTAATCATAGAAATAACAAGGC</canonical>
            <polymorphic>TTCTTTCTTATATTTTTTTTCCTTCCTCGTCGTTATTTAAGAATCGAAATTGTTTCTCCAGGTAATAACAATGAAATCTACTCATGAGAATCGCGACAGGAAGCGGAGATACAGCTCAAGTGACGATGAGAGTCGTCAGTCGAGGTTCTCTGTTCGTCCGAACAATGATGTAAGTTTATTCCTTGATTTTTTTAGAGAAGAAAACTATTCTTGCTTTTAGAAGCCGTCCAACAGCAACAGCAACAGCAACAAGACTCAATCATCCAGAGATAGAGAAATCCGCCGTAACACCGCCACTAGAAACGATTCCAGACGTTTTGAGGTAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCRAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAATTTGAGTAAGTTTATCAAACGTTTAAATACGCTCTAAAAACTTTTTTTGCAGTCATGGACACGATTAATCATAGAAATAACAAGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATTTCATCCGAAAAGGTC</pcr_primer_p1>
		<pcr_primer_p2>CGATATGATGATTTCTCATGACT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCG</canonical_amplicon>
		<polymorphic_amplicon>TAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCRAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14376</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>76781</contig_pos>
        <strand>+</strand>
        <context>TCRTGAAAGC[A/G]ACTCGCGTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGC</left_flank>
        <right_flank>ACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGACCGCCGCCTTTTTTCAAATTCATTTTTTCTTCATTCTATCTTTATTCGCGCACACTGTTCATTTTTCTCAGATTTTCTCCGTTTCTTTCTTATATTTTTTTTCCTTCCTCGTCGTTATTTAAGAATCGAAATTGTTTCTCCAGGTAATAACAATGAAATCTACTCATGAGAATCGCGACAGGAAGCGGAGATACAGCTCAAGTGACGATGAGAGTCGTCAGTCGAGGTTCTCTGTTCGTCCGAACAATGATGTAAGTTTATTCCTTGATTTTTTTAGAGAAGAAAACTATTCTTGCTTTTAGAAGCCGTCCAACAGCAACAGCAACAGCAACAAGACTCAATCATCCAGAGATAGAGAAATCCGCCGTAACACCGCCACTAGAAACGATTCCAGACGTTTTGAGGTAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAAT</canonical>
            <polymorphic>GGACCGCCGCCTTTTTTCAAATTCATTTTTTCTTCATTCTATCTTTATTCGCGCACACTGTTCATTTTTCTCAGATTTTCTCCGTTTCTTTCTTATATTTTTTTTCCTTCCTCGTCGTTATTTAAGAATCGAAATTGTTTCTCCAGGTAATAACAATGAAATCTACTCATGAGAATCGCGACAGGAAGCGGAGATACAGCTCAAGTGACGATGAGAGTCGTCAGTCGAGGTTCTCTGTTCGTCCGAACAATGATGTAAGTTTATTCCTTGATTTTTTTAGAGAAGAAAACTATTCTTGCTTTTAGAAGCCGTCCAACAGCAACAGCAACAGCAACAAGACTCAATCATCCAGAGATAGAGAAATCCGCCGTAACACCGCCACTAGAAACGATTCCAGACGTTTTGAGGTAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCRACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGACGTTACAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>306 137 126 123 110 52 47 46 42 11</canonical_bands>
                <polymorphic_bands>306 156 137 126 123 52 47 42 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAATTTCATCCGAAAAGGTC</pcr_primer_p1>
		<pcr_primer_p2>CGATATGATGATTTCTCATGACT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCG</canonical_amplicon>
		<polymorphic_amplicon>TAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCRACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14377</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>76773</contig_pos>
        <strand>+</strand>
        <context>GAGCGTTGTC[A/G]TGAAAGCRAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTC</left_flank>
        <right_flank>TGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGTTGCGGACCGCCGCCTTTTTTCAAATTCATTTTTTCTTCATTCTATCTTTATTCGCGCACACTGTTCATTTTTCTCAGATTTTCTCCGTTTCTTTCTTATATTTTTTTTCCTTCCTCGTCGTTATTTAAGAATCGAAATTGTTTCTCCAGGTAATAACAATGAAATCTACTCATGAGAATCGCGACAGGAAGCGGAGATACAGCTCAAGTGACGATGAGAGTCGTCAGTCGAGGTTCTCTGTTCGTCCGAACAATGATGTAAGTTTATTCCTTGATTTTTTTAGAGAAGAAAACTATTCTTGCTTTTAGAAGCCGTCCAACAGCAACAGCAACAGCAACAAGACTCAATCATCCAGAGATAGAGAAATCCGCCGTAACACCGCCACTAGAAACGATTCCAGACGTTTTGAGGTAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGAC</canonical>
            <polymorphic>TGTGTTGCGGACCGCCGCCTTTTTTCAAATTCATTTTTTCTTCATTCTATCTTTATTCGCGCACACTGTTCATTTTTCTCAGATTTTCTCCGTTTCTTTCTTATATTTTTTTTCCTTCCTCGTCGTTATTTAAGAATCGAAATTGTTTCTCCAGGTAATAACAATGAAATCTACTCATGAGAATCGCGACAGGAAGCGGAGATACAGCTCAAGTGACGATGAGAGTCGTCAGTCGAGGTTCTCTGTTCGTCCGAACAATGATGTAAGTTTATTCCTTGATTTTTTTAGAGAAGAAAACTATTCTTGCTTTTAGAAGCCGTCCAACAGCAACAGCAACAGCAACAAGACTCAATCATCCAGAGATAGAGAAATCCGCCGTAACACCGCCACTAGAAACGATTCCAGACGTTTTGAGGTAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCRTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAGTTTCCGGAAATCGATGTAACAAAGCAATTGAGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>168 150 99 95 86 70 70 59 44 28 24 22 18 16 15 9 9 6 4 3 3 2</canonical_bands>
                <polymorphic_bands>168 150 99 95 86 85 70 59 44 28 24 22 18 16 9 9 6 4 3 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAATTTCATCCGAAAAGGTC</pcr_primer_p1>
		<pcr_primer_p2>CGATATGATGATTTCTCATGACT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCG</canonical_amplicon>
		<polymorphic_amplicon>TAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCRTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14378</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>76739</contig_pos>
        <strand></strand>
        <context>TTTGCAGAAA[G/A]ATCAACGTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAA</left_flank>
        <right_flank>ATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGT</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCCTCCCGCCATGTCCGCGATGTGGCGTCGTTGTGTGTTGCGGACCGCCGCCTTTTTTCAAATTCATTTTTTCTTCATTCTATCTTTATTCGCGCACACTGTTCATTTTTCTCAGATTTTCTCCGTTTCTTTCTTATATTTTTTTTCCTTCCTCGTCGTTATTTAAGAATCGAAATTGTTTCTCCAGGTAATAACAATGAAATCTACTCATGAGAATCGCGACAGGAAGCGGAGATACAGCTCAAGTGACGATGAGAGTCGTCAGTCGAGGTTCTCTGTTCGTCCGAACAATGATGTAAGTTTATTCCTTGATTTTTTTAGAGAAGAAAACTATTCTTGCTTTTAGAAGCCGTCCAACAGCAACAGCAACAGCAACAAGACTCAATCATCCAGAGATAGAGAAATCCGCCGTAACACCGCCACTAGAAACGATTCCAGACGTTTTGAGGTAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAG</canonical>
            <polymorphic>CCCCTCCCGCCATGTCCGCGATGTGGCGTCGTTGTGTGTTGCGGACCGCCGCCTTTTTTCAAATTCATTTTTTCTTCATTCTATCTTTATTCGCGCACACTGTTCATTTTTCTCAGATTTTCTCCGTTTCTTTCTTATATTTTTTTTCCTTCCTCGTCGTTATTTAAGAATCGAAATTGTTTCTCCAGGTAATAACAATGAAATCTACTCATGAGAATCGCGACAGGAAGCGGAGATACAGCTCAAGTGACGATGAGAGTCGTCAGTCGAGGTTCTCTGTTCGTCCGAACAATGATGTAAGTTTATTCCTTGATTTTTTTAGAGAAGAAAACTATTCTTGCTTTTAGAAGCCGTCCAACAGCAACAGCAACAGCAACAAGACTCAATCATCCAGAGATAGAGAAATCCGCCGTAACACCGCCACTAGAAACGATTCCAGACGTTTTGAGGTAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAARATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTTCAGGCGAAAATCTCCGTACTCGAAAAGCACTCGCCGTGATCATCGCGATGATCGTGAAAGTCATGAGAAATCATCATATCGTCGGGAAACTGACAATTTTGGAAACGTCGCCAAAGATCATTACCACCAGGATCATCGTACAAAATCCCCAGTGGAAAAAAGAGCCAAAAGAAGTGATCAGGCTGAAGACCGCCATTGTGAAAACCGTCGACGTCACGACAAATCTCGTACGCGTTCTCCTATGAGCAAAGGATCCGATGGATGGGATGAAGTCAATACTTCTGATTCTACAACTACCAAGCGCAGTCGTGACACATCTTCAACGTCTCCGGATAGTCAAGCATCCAGAAGTTCCGAAGCGTCATATCGCAGGTCTGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>499 128 76 66 56 55 48 45 15 12</canonical_bands>
                <polymorphic_bands>554 128 76 66 56 48 45 15 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGACTCAATCATCCAGAGATA</pcr_primer_p1>
		<pcr_primer_p2>AAACTTTGATCCCTGTGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CAAGACTCAATCATCCAGAGATAGAGAAATCCGCCGTAACACCGCCACTAGAAACGATTCCAGACGTTTTGAGGTAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAAGATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>CAAGACTCAATCATCCAGAGATAGAGAAATCCGCCGTAACACCGCCACTAGAAACGATTCCAGACGTTTTGAGGTAAATTTCATCCGAAAAGGTCCAGGGGCATATATTGATTTTTGCAGAAARATCAACGTGGTGCCCGTCGTGAAGAGCGTTGTCGTGAAAGCGACTCGCGTACGAGATCTTCAGTCAGTCGGAAATCGAAGAACGACGGATTCGGAAACGAGTCTCACAGGGATCAAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14379</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>114877</contig_pos>
        <strand>+</strand>
        <context>TGAAGACAAT[A/C]AAAAATACGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTCTCAAGAGAAAGGGAAGACGAAGACACTAGCAAAAACTTGAAGACAAT</left_flank>
        <right_flank>AAAAATACGTTTTCTGTGTGCATTGCTTGACATCATCGCCCTAATTTTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCCCCCCCCCCCCCCCAGAAGAAGATGCAATCTCTTCTTTAACTCTGTTTGGCTGTGTCGGGGTGACCAGTGGACAAAGAAAGAATAAGTAGAAGAGGACGACAATGTTGCCACGGATATAATAGATTGACAAGGACACAACGGGTGCACCCCAACACCACCAGTGGCGTCTTTCACCCTCACAGTACAACAAGAAAATTGGCCCTAATTCGATGATCATGAAAAATTGAAAGAATGCATTGAGAAGGACACTGGGGACCCCCGATTCTTATTCTTCTTTTCCAGAAAAAAATAAGTGGTGGTTGTGAGAAAAGAATGAAGCAAAAAAAGAGCATCATTCCCGAGTGTGCCATCTGGGACCAAGTGTTTTGTCGGCAAGAAGAAAAAAATGTGGAAAAAGAGCAGAAAAAAAGAGAACATGAATATTCTTGTTCTCTTTTTCAAATAGCTCTCAAGAGAAAGGGAAGACGAAGACACTAGCAAAAACTTGAAGACAATAAAAAATACGTTTTCTGTGTGCATTGCTTGACATCATCGCCCTAATTTTTCTCCATGGGGACAAAGAGGCACGAAAAACTATTGTTTGTGCTTATCAACCGTTTTTTCGTATGCTTTTTTCCTAGGCTCTATTGTCTTCCGCACTGTCTCATTGCCTCCGAAAGATAACAAAAGATATTTTGAAAACAAAGCGAGCGACAGGTCGGAAACAGTTTTTTTGTGCCATGAGGAATGATTTCGAAACTCGTGGAGGAGGAAGGGGAACGTAAATTGGTTGGCGCCAACGGCTTTCACATTTTCCATCCGCTTAGCGCTTGATAGGAGAGAAAGGGGCGGAGAAAAGCGGGCGGAGCTAAAGGAGACAAAACCAATTTGGAACTTAATTCTGTGGAAAAAGGGAAAACGCTGCTTATAAACTCCTCCGCCAAAGGGTAGGCGGATCGAAAGAAAGTGGGCGAGAAGTGTCACATTATATGGGATCGAGGAATCGGATGGCTTTAG</canonical>
            <polymorphic>CCCCCCCCCCCCCCCCCAGAAGAAGATGCAATCTCTTCTTTAACTCTGTTTGGCTGTGTCGGGGTGACCAGTGGACAAAGAAAGAATAAGTAGAAGAGGACGACAATGTTGCCACGGATATAATAGATTGACAAGGACACAACGGGTGCACCCCAACACCACCAGTGGCGTCTTTCACCCTCACAGTACAACAAGAAAATTGGCCCTAATTCGATGATCATGAAAAATTGAAAGAATGCATTGAGAAGGACACTGGGGACCCCCGATTCTTATTCTTCTTTTCCAGAAAAAAATAAGTGGTGGTTGTGAGAAAAGAATGAAGCAAAAAAAGAGCATCATTCCCGAGTGTGCCATCTGGGACCAAGTGTTTTGTCGGCAAGAAGAAAAAAATGTGGAAAAAGAGCAGAAAAAAAGAGAACATGAATATTCTTGTTCTCTTTTTCAAATAGCTCTCAAGAGAAAGGGAAGACGAAGACACTAGCAAAAACTTGAAGACAATMAAAAATACGTTTTCTGTGTGCATTGCTTGACATCATCGCCCTAATTTTTCTCCATGGGGACAAAGAGGCACGAAAAACTATTGTTTGTGCTTATCAACCGTTTTTTCGTATGCTTTTTTCCTAGGCTCTATTGTCTTCCGCACTGTCTCATTGCCTCCGAAAGATAACAAAAGATATTTTGAAAACAAAGCGAGCGACAGGTCGGAAACAGTTTTTTTGTGCCATGAGGAATGATTTCGAAACTCGTGGAGGAGGAAGGGGAACGTAAATTGGTTGGCGCCAACGGCTTTCACATTTTCCATCCGCTTAGCGCTTGATAGGAGAGAAAGGGGCGGAGAAAAGCGGGCGGAGCTAAAGGAGACAAAACCAATTTGGAACTTAATTCTGTGGAAAAAGGGAAAACGCTGCTTATAAACTCCTCCGCCAAAGGGTAGGCGGATCGAAAGAAAGTGGGCGAGAAGTGTCACATTATATGGGATCGAGGAATCGGATGGCTTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTGGAAAAAGAGCAGAA</pcr_primer_p1>
		<pcr_primer_p2>AAGACAATAGAGCCTAGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATGTGGAAAAAGAGCAGAAAAAAAGAGAACATGAATATTCTTGTTCTCTTTTTCAAATAGCTCTCAAGAGAAAGGGAAGACGAAGACACTAGCAAAAACTTGAAGACAATAAAAAATACGTTTTCTGTGTGCATTGCTTGACATCATCGCCCTAATTTTTCTCCATGGGGACAAAGAGGCACGAAAAACTATTGTTTGTGCTTATCAACCGTTTTTTCGTATGCTTTTTTCCTAGGCTCTATTGTCTT</canonical_amplicon>
		<polymorphic_amplicon>AATGTGGAAAAAGAGCAGAAAAAAAGAGAACATGAATATTCTTGTTCTCTTTTTCAAATAGCTCTCAAGAGAAAGGGAAGACGAAGACACTAGCAAAAACTTGAAGACAATMAAAAATACGTTTTCTGTGTGCATTGCTTGACATCATCGCCCTAATTTTTCTCCATGGGGACAAAGAGGCACGAAAAACTATTGTTTGTGCTTATCAACCGTTTTTTCGTATGCTTTTTTCCTAGGCTCTATTGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14380</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>115384</contig_pos>
        <strand>+</strand>
        <context>TTAGCAAAAA[A/G]TTTTTGTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAGTGTCACATTATATGGGATCGAGGAATCGGATGGCTTTAGCAAAAA</left_flank>
        <right_flank>TTTTTGTTCTATTTTCACTCCGTAATGGTATGCAAAGTTCTCGAAACTGC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTTTCTGTGTGCATTGCTTGACATCATCGCCCTAATTTTTCTCCATGGGGACAAAGAGGCACGAAAAACTATTGTTTGTGCTTATCAACCGTTTTTTCGTATGCTTTTTTCCTAGGCTCTATTGTCTTCCGCACTGTCTCATTGCCTCCGAAAGATAACAAAAGATATTTTGAAAACAAAGCGAGCGACAGGTCGGAAACAGTTTTTTTGTGCCATGAGGAATGATTTCGAAACTCGTGGAGGAGGAAGGGGAACGTAAATTGGTTGGCGCCAACGGCTTTCACATTTTCCATCCGCTTAGCGCTTGATAGGAGAGAAAGGGGCGGAGAAAAGCGGGCGGAGCTAAAGGAGACAAAACCAATTTGGAACTTAATTCTGTGGAAAAAGGGAAAACGCTGCTTATAAACTCCTCCGCCAAAGGGTAGGCGGATCGAAAGAAAGTGGGCGAGAAGTGTCACATTATATGGGATCGAGGAATCGGATGGCTTTAGCAAAAAATTTTTGTTCTATTTTCACTCCGTAATGGTATGCAAAGTTCTCGAAACTGCTTTTGTTCTAACTGGAAAATGTAAATTTTTAGTGGGTTTACTACGGTATCCTTGAGTTGAGGAAGTAAAAAAGACTACTACGCACAGAGAGGCTCTGGAGCTTAGGAAAATTACGTTCCAAGTTAAATTAACAAAGTTTCATATCTTTTGAAGCCATAATCTGGGAAAATGAAAGAAAAATATAATTTTTTCAACAACAAAACAGCTGGAATTCTTGTGCATAATTGCTTTTTGAGTTCTAGCACACATCGAGAAACCTTAAAAAGCCAAAGGACCAAAACAATTGCAAGATTACCGCTTTAGTACTCAATTTCTAGCTAAAAATTGAATGTGTCGGAATATCAGGCTACCTATGAAATCCCTATTTTTGTTTGAAACCTTTGAGAAATTCAACACTGTAGCTCTAATTTCTGACATTACCTCGTGAAAACTGAGTTTCTGTCCTTTTAA</canonical>
            <polymorphic>CGTTTTCTGTGTGCATTGCTTGACATCATCGCCCTAATTTTTCTCCATGGGGACAAAGAGGCACGAAAAACTATTGTTTGTGCTTATCAACCGTTTTTTCGTATGCTTTTTTCCTAGGCTCTATTGTCTTCCGCACTGTCTCATTGCCTCCGAAAGATAACAAAAGATATTTTGAAAACAAAGCGAGCGACAGGTCGGAAACAGTTTTTTTGTGCCATGAGGAATGATTTCGAAACTCGTGGAGGAGGAAGGGGAACGTAAATTGGTTGGCGCCAACGGCTTTCACATTTTCCATCCGCTTAGCGCTTGATAGGAGAGAAAGGGGCGGAGAAAAGCGGGCGGAGCTAAAGGAGACAAAACCAATTTGGAACTTAATTCTGTGGAAAAAGGGAAAACGCTGCTTATAAACTCCTCCGCCAAAGGGTAGGCGGATCGAAAGAAAGTGGGCGAGAAGTGTCACATTATATGGGATCGAGGAATCGGATGGCTTTAGCAAAAARTTTTTGTTCTATTTTCACTCCGTAATGGTATGCAAAGTTCTCGAAACTGCTTTTGTTCTAACTGGAAAATGTAAATTTTTAGTGGGTTTACTACGGTATCCTTGAGTTGAGGAAGTAAAAAAGACTACTACGCACAGAGAGGCTCTGGAGCTTAGGAAAATTACGTTCCAAGTTAAATTAACAAAGTTTCATATCTTTTGAAGCCATAATCTGGGAAAATGAAAGAAAAATATAATTTTTTCAACAACAAAACAGCTGGAATTCTTGTGCATAATTGCTTTTTGAGTTCTAGCACACATCGAGAAACCTTAAAAAGCCAAAGGACCAAAACAATTGCAAGATTACCGCTTTAGTACTCAATTTCTAGCTAAAAATTGAATGTGTCGGAATATCAGGCTACCTATGAAATCCCTATTTTTGTTTGAAACCTTTGAGAAATTCAACACTGTAGCTCTAATTTCTGACATTACCTCGTGAAAACTGAGTTTCTGTCCTTTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>498 186 177 75 64</canonical_bands>
                <polymorphic_bands>573 186 177 64</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>225 125 101 85 75 64 59 58 45 35 27 26 19 17 14 13 12</canonical_bands>
                <polymorphic_bands>225 200 101 85 64 59 58 45 35 27 26 19 17 14 13 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTGGAACTTAATTCTGTGGA</pcr_primer_p1>
		<pcr_primer_p2>CTCAACTCAAGGATACCGTAGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTGGAACTTAATTCTGTGGAAAAAGGGAAAACGCTGCTTATAAACTCCTCCGCCAAAGGGTAGGCGGATCGAAAGAAAGTGGGCGAGAAGTGTCACATTATATGGGATCGAGGAATCGGATGGCTTTAGCAAAAAATTTTTGTTCTATTTTCACTCCGTAATGGTATGCAAAGTTCTCGAAACTGCTTTTGTTCTAACTGGAAAATGTAAATTTTTAGTGGGTTTACTACGGTATCCTTGAGTTGAG</canonical_amplicon>
		<polymorphic_amplicon>ATTTGGAACTTAATTCTGTGGAAAAAGGGAAAACGCTGCTTATAAACTCCTCCGCCAAAGGGTAGGCGGATCGAAAGAAAGTGGGCGAGAAGTGTCACATTATATGGGATCGAGGAATCGGATGGCTTTAGCAAAAARTTTTTGTTCTATTTTCACTCCGTAATGGTATGCAAAGTTCTCGAAACTGCTTTTGTTCTAACTGGAAAATGTAAATTTTTAGTGGGTTTACTACGGTATCCTTGAGTTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14381</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>115659</contig_pos>
        <strand>+</strand>
        <context>TTGTGCATAA[C/T]TGCTTTTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAAATATAATTTTTTCAACAACAAAACAGCTGGAATTCTTGTGCATAA</left_flank>
        <right_flank>TGCTTTTTGAGTTCTAGCACACATCGAGAAACCTTAAAAAGCCAAAGGAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGGCTTTCACATTTTCCATCCGCTTAGCGCTTGATAGGAGAGAAAGGGGCGGAGAAAAGCGGGCGGAGCTAAAGGAGACAAAACCAATTTGGAACTTAATTCTGTGGAAAAAGGGAAAACGCTGCTTATAAACTCCTCCGCCAAAGGGTAGGCGGATCGAAAGAAAGTGGGCGAGAAGTGTCACATTATATGGGATCGAGGAATCGGATGGCTTTAGCAAAAAATTTTTGTTCTATTTTCACTCCGTAATGGTATGCAAAGTTCTCGAAACTGCTTTTGTTCTAACTGGAAAATGTAAATTTTTAGTGGGTTTACTACGGTATCCTTGAGTTGAGGAAGTAAAAAAGACTACTACGCACAGAGAGGCTCTGGAGCTTAGGAAAATTACGTTCCAAGTTAAATTAACAAAGTTTCATATCTTTTGAAGCCATAATCTGGGAAAATGAAAGAAAAATATAATTTTTTCAACAACAAAACAGCTGGAATTCTTGTGCATAATTGCTTTTTGAGTTCTAGCACACATCGAGAAACCTTAAAAAGCCAAAGGACCAAAACAATTGCAAGATTACCGCTTTAGTACTCAATTTCTAGCTAAAAATTGAATGTGTCGGAATATCAGGCTACCTATGAAATCCCTATTTTTGTTTGAAACCTTTGAGAAATTCAACACTGTAGCTCTAATTTCTGACATTACCTCGTGAAAACTGAGTTTCTGTCCTTTTAAGGCTACTGCAGTTCTAAGAAAACCCACAAAAATTTATTTCTGTCTACTGTAGAGCTTTGAAAATTTGAATCTGAATGATCACCTCCGCTGAGAGAAGAAGACTCTTCCCTAATTTTCCAAAAATTTCAATTTTTAGGACTTTTTCAGCTGAAAATTCAATTTGTTTTGTTCCAATCTCTGGAACCTGTTTGATAAGAAACTCTAGAAACCTTGATATATTAACGAAAACCGCGGAAAAAGCACATAAAATTTGATTTTTCGTCCTAAATCTTGAT</canonical>
            <polymorphic>ACGGCTTTCACATTTTCCATCCGCTTAGCGCTTGATAGGAGAGAAAGGGGCGGAGAAAAGCGGGCGGAGCTAAAGGAGACAAAACCAATTTGGAACTTAATTCTGTGGAAAAAGGGAAAACGCTGCTTATAAACTCCTCCGCCAAAGGGTAGGCGGATCGAAAGAAAGTGGGCGAGAAGTGTCACATTATATGGGATCGAGGAATCGGATGGCTTTAGCAAAAAATTTTTGTTCTATTTTCACTCCGTAATGGTATGCAAAGTTCTCGAAACTGCTTTTGTTCTAACTGGAAAATGTAAATTTTTAGTGGGTTTACTACGGTATCCTTGAGTTGAGGAAGTAAAAAAGACTACTACGCACAGAGAGGCTCTGGAGCTTAGGAAAATTACGTTCCAAGTTAAATTAACAAAGTTTCATATCTTTTGAAGCCATAATCTGGGAAAATGAAAGAAAAATATAATTTTTTCAACAACAAAACAGCTGGAATTCTTGTGCATAAYTGCTTTTTGAGTTCTAGCACACATCGAGAAACCTTAAAAAGCCAAAGGACCAAAACAATTGCAAGATTACCGCTTTAGTACTCAATTTCTAGCTAAAAATTGAATGTGTCGGAATATCAGGCTACCTATGAAATCCCTATTTTTGTTTGAAACCTTTGAGAAATTCAACACTGTAGCTCTAATTTCTGACATTACCTCGTGAAAACTGAGTTTCTGTCCTTTTAAGGCTACTGCAGTTCTAAGAAAACCCACAAAAATTTATTTCTGTCTACTGTAGAGCTTTGAAAATTTGAATCTGAATGATCACCTCCGCTGAGAGAAGAAGACTCTTCCCTAATTTTCCAAAAATTTCAATTTTTAGGACTTTTTCAGCTGAAAATTCAATTTGTTTTGTTCCAATCTCTGGAACCTGTTTGATAAGAAACTCTAGAAACCTTGATATATTAACGAAAACCGCGGAAAAAGCACATAAAATTTGATTTTTCGTCCTAAATCTTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>125 90 86 85 75 75 64 59 58 49 31 28 27 26 25 19 17 14 13 12 11 6 5</canonical_bands>
                <polymorphic_bands>125 90 86 85 75 75 72 64 58 49 31 28 27 26 25 19 17 14 12 11 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATATCTTTTGAAGCCATAATC</pcr_primer_p1>
		<pcr_primer_p2>CTCAAAGGTTTCAAACAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCATATCTTTTGAAGCCATAATCTGGGAAAATGAAAGAAAAATATAATTTTTTCAACAACAAAACAGCTGGAATTCTTGTGCATAATTGCTTTTTGAGTTCTAGCACACATCGAGAAACCTTAAAAAGCCAAAGGACCAAAACAATTGCAAGATTACCGCTTTAGTACTCAATTTCTAGCTAAAAATTGAATGTGTCGGAATATCAGGCTACCTATGAAATCCCTATTTTTGTTTGAAACCTTTGAG</canonical_amplicon>
		<polymorphic_amplicon>TCATATCTTTTGAAGCCATAATCTGGGAAAATGAAAGAAAAATATAATTTTTTCAACAACAAAACAGCTGGAATTCTTGTGCATAAYTGCTTTTTGAGTTCTAGCACACATCGAGAAACCTTAAAAAGCCAAAGGACCAAAACAATTGCAAGATTACCGCTTTAGTACTCAATTTCTAGCTAAAAATTGAATGTGTCGGAATATCAGGCTACCTATGAAATCCCTATTTTTGTTTGAAACCTTTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14382</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>115702</contig_pos>
        <strand>+</strand>
        <context>CTTAAAAAGC[A/C]AAAGGACCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCATAATTGCTTTTTGAGTTCTAGCACACATCGAGAAACCTTAAAAAGC</left_flank>
        <right_flank>AAAGGACCAAAACAATTGCAAGATTACCGCTTTAGTACTCAATTTCTAGC</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGGGGCGGAGAAAAGCGGGCGGAGCTAAAGGAGACAAAACCAATTTGGAACTTAATTCTGTGGAAAAAGGGAAAACGCTGCTTATAAACTCCTCCGCCAAAGGGTAGGCGGATCGAAAGAAAGTGGGCGAGAAGTGTCACATTATATGGGATCGAGGAATCGGATGGCTTTAGCAAAAAATTTTTGTTCTATTTTCACTCCGTAATGGTATGCAAAGTTCTCGAAACTGCTTTTGTTCTAACTGGAAAATGTAAATTTTTAGTGGGTTTACTACGGTATCCTTGAGTTGAGGAAGTAAAAAAGACTACTACGCACAGAGAGGCTCTGGAGCTTAGGAAAATTACGTTCCAAGTTAAATTAACAAAGTTTCATATCTTTTGAAGCCATAATCTGGGAAAATGAAAGAAAAATATAATTTTTTCAACAACAAAACAGCTGGAATTCTTGTGCATAATTGCTTTTTGAGTTCTAGCACACATCGAGAAACCTTAAAAAGCCAAAGGACCAAAACAATTGCAAGATTACCGCTTTAGTACTCAATTTCTAGCTAAAAATTGAATGTGTCGGAATATCAGGCTACCTATGAAATCCCTATTTTTGTTTGAAACCTTTGAGAAATTCAACACTGTAGCTCTAATTTCTGACATTACCTCGTGAAAACTGAGTTTCTGTCCTTTTAAGGCTACTGCAGTTCTAAGAAAACCCACAAAAATTTATTTCTGTCTACTGTAGAGCTTTGAAAATTTGAATCTGAATGATCACCTCCGCTGAGAGAAGAAGACTCTTCCCTAATTTTCCAAAAATTTCAATTTTTAGGACTTTTTCAGCTGAAAATTCAATTTGTTTTGTTCCAATCTCTGGAACCTGTTTGATAAGAAACTCTAGAAACCTTGATATATTAACGAAAACCGCGGAAAAAGCACATAAAATTTGATTTTTCGTCCTAAATCTTGATTTCCTATGCTTAATGACCCAGCCCAATGAGTATCATGCAGAAA</canonical>
            <polymorphic>AAAGGGGCGGAGAAAAGCGGGCGGAGCTAAAGGAGACAAAACCAATTTGGAACTTAATTCTGTGGAAAAAGGGAAAACGCTGCTTATAAACTCCTCCGCCAAAGGGTAGGCGGATCGAAAGAAAGTGGGCGAGAAGTGTCACATTATATGGGATCGAGGAATCGGATGGCTTTAGCAAAAAATTTTTGTTCTATTTTCACTCCGTAATGGTATGCAAAGTTCTCGAAACTGCTTTTGTTCTAACTGGAAAATGTAAATTTTTAGTGGGTTTACTACGGTATCCTTGAGTTGAGGAAGTAAAAAAGACTACTACGCACAGAGAGGCTCTGGAGCTTAGGAAAATTACGTTCCAAGTTAAATTAACAAAGTTTCATATCTTTTGAAGCCATAATCTGGGAAAATGAAAGAAAAATATAATTTTTTCAACAACAAAACAGCTGGAATTCTTGTGCATAATTGCTTTTTGAGTTCTAGCACACATCGAGAAACCTTAAAAAGCMAAAGGACCAAAACAATTGCAAGATTACCGCTTTAGTACTCAATTTCTAGCTAAAAATTGAATGTGTCGGAATATCAGGCTACCTATGAAATCCCTATTTTTGTTTGAAACCTTTGAGAAATTCAACACTGTAGCTCTAATTTCTGACATTACCTCGTGAAAACTGAGTTTCTGTCCTTTTAAGGCTACTGCAGTTCTAAGAAAACCCACAAAAATTTATTTCTGTCTACTGTAGAGCTTTGAAAATTTGAATCTGAATGATCACCTCCGCTGAGAGAAGAAGACTCTTCCCTAATTTTCCAAAAATTTCAATTTTTAGGACTTTTTCAGCTGAAAATTCAATTTGTTTTGTTCCAATCTCTGGAACCTGTTTGATAAGAAACTCTAGAAACCTTGATATATTAACGAAAACCGCGGAAAAAGCACATAAAATTTGATTTTTCGTCCTAAATCTTGATTTCCTATGCTTAATGACCCAGCCCAATGAGTATCATGCAGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>155 149 143 93 61 55 53 52 52 51 51 29 26 22 8</canonical_bands>
                <polymorphic_bands>155 149 143 112 93 55 53 52 52 51 29 26 22 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATATCTTTTGAAGCCATAATC</pcr_primer_p1>
		<pcr_primer_p2>CTCAAAGGTTTCAAACAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCATATCTTTTGAAGCCATAATCTGGGAAAATGAAAGAAAAATATAATTTTTTCAACAACAAAACAGCTGGAATTCTTGTGCATAATTGCTTTTTGAGTTCTAGCACACATCGAGAAACCTTAAAAAGCCAAAGGACCAAAACAATTGCAAGATTACCGCTTTAGTACTCAATTTCTAGCTAAAAATTGAATGTGTCGGAATATCAGGCTACCTATGAAATCCCTATTTTTGTTTGAAACCTTTGAG</canonical_amplicon>
		<polymorphic_amplicon>TCATATCTTTTGAAGCCATAATCTGGGAAAATGAAAGAAAAATATAATTTTTTCAACAACAAAACAGCTGGAATTCTTGTGCATAATTGCTTTTTGAGTTCTAGCACACATCGAGAAACCTTAAAAAGCMAAAGGACCAAAACAATTGCAAGATTACCGCTTTAGTACTCAATTTCTAGCTAAAAATTGAATGTGTCGGAATATCAGGCTACCTATGAAATCCCTATTTTTGTTTGAAACCTTTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14383</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>117788</contig_pos>
        <strand>+</strand>
        <context>TTTTAGGAAT[A/T]ATAAAACTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGGCTTCAATTTTAATTTGGAAAACATCCCTGAAGACCTTTTTAGGAAT</left_flank>
        <right_flank>ATAAAACTCCGACAAAAAAGTGGACAATTTACAAATAATTGGGGATAATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCTGCAATGCGCTAGTCAATTGTCTTCGTATTTTAAATCCTATTGTCCTCATTGTTGCATGTGGGGTATTTATCGTGTTCTGCAGGTTTCTGTAGAGTATGAAGACTCAGCTACAGTGAGGAATAACGGGTGGACAAGATGGAAAATTGGGGCTAATTTAGAAAATAAAAATTTTCGAAAAAAAACATCTTAAAAACTGTAATATAGCGGCCTATACTTGCCTATACTTGCACTTTCAGTTTGATTATTTCATGTTCTGTGAGAGATATCAACAGTGGGCTTACTACGAAAATTTTGGTGATATTATGATAAAAAGTTTATCAGTTTTCCAAAATTTTCTACTGAAATTGAGATAATGGAGCTCAAAGTGGGTGTTACGGTTGGCGTCTCTATTGCAGTGTTTACTGCACTTTTAGAATTTTGAGACTCTCGCTAGAAATTCATTTTCAGGCTTCAATTTTAATTTGGAAAACATCCCTGAAGACCTTTTTAGGAATAATAAAACTCCGACAAAAAAGTGGACAATTTACAAATAATTGGGGATAATTTTAGAAAAAAACTCAGAATATTTGCAAAAAATCCATTTTAGATATTTTCAGAATTTTGTGCCAGAAAATCTTTGTAGCCTTTATTTGAAACTTTTTTCCCTGAGCTATATAAGAAGGATATTTTTTGTTACTTTAGAACTATAAAGCGCCAAAAACCACACACAGAACATCAACAACTAGGAATTCTCATGCATTTCTTATTACTATAAACTTTTCTCTCTTTTCTAGAAAGCTTTATCTAAAACTGATCTTTTGATTTTTCACATACCGAAGGACACAGAAATAACTTAAAATTCATATTTCAAGAAGAAATAATTTCGAAATTGCTCTTGAGAAACTCAACGTTTTGATATGAAATGTCACTATTCTTTCTATTTGCAGCTGTGATCAATGGCGAAACTAATCGGTTTTAGGCTTCTTTTGACTCTTTTTTTGCGATTTCAATTCATT</canonical>
            <polymorphic>GAGCTGCAATGCGCTAGTCAATTGTCTTCGTATTTTAAATCCTATTGTCCTCATTGTTGCATGTGGGGTATTTATCGTGTTCTGCAGGTTTCTGTAGAGTATGAAGACTCAGCTACAGTGAGGAATAACGGGTGGACAAGATGGAAAATTGGGGCTAATTTAGAAAATAAAAATTTTCGAAAAAAAACATCTTAAAAACTGTAATATAGCGGCCTATACTTGCCTATACTTGCACTTTCAGTTTGATTATTTCATGTTCTGTGAGAGATATCAACAGTGGGCTTACTACGAAAATTTTGGTGATATTATGATAAAAAGTTTATCAGTTTTCCAAAATTTTCTACTGAAATTGAGATAATGGAGCTCAAAGTGGGTGTTACGGTTGGCGTCTCTATTGCAGTGTTTACTGCACTTTTAGAATTTTGAGACTCTCGCTAGAAATTCATTTTCAGGCTTCAATTTTAATTTGGAAAACATCCCTGAAGACCTTTTTAGGAATWATAAAACTCCGACAAAAAAGTGGACAATTTACAAATAATTGGGGATAATTTTAGAAAAAAACTCAGAATATTTGCAAAAAATCCATTTTAGATATTTTCAGAATTTTGTGCCAGAAAATCTTTGTAGCCTTTATTTGAAACTTTTTTCCCTGAGCTATATAAGAAGGATATTTTTTGTTACTTTAGAACTATAAAGCGCCAAAAACCACACACAGAACATCAACAACTAGGAATTCTCATGCATTTCTTATTACTATAAACTTTTCTCTCTTTTCTAGAAAGCTTTATCTAAAACTGATCTTTTGATTTTTCACATACCGAAGGACACAGAAATAACTTAAAATTCATATTTCAAGAAGAAATAATTTCGAAATTGCTCTTGAGAAACTCAACGTTTTGATATGAAATGTCACTATTCTTTCTATTTGCAGCTGTGATCAATGGCGAAACTAATCGGTTTTAGGCTTCTTTTGACTCTTTTTTTGCGATTTCAATTCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGAGACTCTCGCTAGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTCTTATATAGCTCAGGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGAGACTCTCGCTAGAAATTCATTTTCAGGCTTCAATTTTAATTTGGAAAACATCCCTGAAGACCTTTTTAGGAATAATAAAACTCCGACAAAAAAGTGGACAATTTACAAATAATTGGGGATAATTTTAGAAAAAAACTCAGAATATTTGCAAAAAATCCATTTTAGATATTTTCAGAATTTTGTGCCAGAAAATCTTTGTAGCCTTTATTTGAAACTTTTTTCCCTGAGCTATATAAGAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGAGACTCTCGCTAGAAATTCATTTTCAGGCTTCAATTTTAATTTGGAAAACATCCCTGAAGACCTTTTTAGGAATWATAAAACTCCGACAAAAAAGTGGACAATTTACAAATAATTGGGGATAATTTTAGAAAAAAACTCAGAATATTTGCAAAAAATCCATTTTAGATATTTTCAGAATTTTGTGCCAGAAAATCTTTGTAGCCTTTATTTGAAACTTTTTTCCCTGAGCTATATAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14384</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>117393</contig_pos>
        <strand>+</strand>
        <context>TAGAGTATGA[A/G]GACTCAGCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTGCATGTGGGGTATTTATCGTGTTCTGCAGGTTTCTGTAGAGTATGA</left_flank>
        <right_flank>GACTCAGCTACAGTGAGGAATAACGGGTGGACAAGATGGAAAATTGGGGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCGAATTTTCCGGGAATCCAGATGGACGGGAAAGGATACAGATTGCCTAGAATAGTACAGTATCGGTCAATAAGATATACAAAATCATGTTTTTAAATTGGTTTTCTGCCATTTCGACCTTTTTCAGAAGGTTTTCTAGTTTCCGGTAACTTCAAGGACTCTGGTGGGTAAAAAACACATTTTCAGAAAACTTGAGAAGAGAAAAGAATTGAGAAGATCAAGAAAACCATACCCCAGGAATACAAAAAAAGAAGAAATATTTGTCTTCCAGAACTTTCTGTACTTGTCTAGACAGTCCGGAAAGTTTGAAGTATGCGGATTCAAAACGGGGCTAATAACTACTTTTTTTCAGTGGTGTGTGTTTGTGTTGGGCATGGTCAAATTATGTGATTCGAGCTGCAATGCGCTAGTCAATTGTCTTCGTATTTTAAATCCTATTGTCCTCATTGTTGCATGTGGGGTATTTATCGTGTTCTGCAGGTTTCTGTAGAGTATGAAGACTCAGCTACAGTGAGGAATAACGGGTGGACAAGATGGAAAATTGGGGCTAATTTAGAAAATAAAAATTTTCGAAAAAAAACATCTTAAAAACTGTAATATAGCGGCCTATACTTGCCTATACTTGCACTTTCAGTTTGATTATTTCATGTTCTGTGAGAGATATCAACAGTGGGCTTACTACGAAAATTTTGGTGATATTATGATAAAAAGTTTATCAGTTTTCCAAAATTTTCTACTGAAATTGAGATAATGGAGCTCAAAGTGGGTGTTACGGTTGGCGTCTCTATTGCAGTGTTTACTGCACTTTTAGAATTTTGAGACTCTCGCTAGAAATTCATTTTCAGGCTTCAATTTTAATTTGGAAAACATCCCTGAAGACCTTTTTAGGAATAATAAAACTCCGACAAAAAAGTGGACAATTTACAAATAATTGGGGATAATTTTAGAAAAAAACTCAGAATATTTGCAAAAAATCCATTTTAGATATTTTCAGAATT</canonical>
            <polymorphic>GAGCGAATTTTCCGGGAATCCAGATGGACGGGAAAGGATACAGATTGCCTAGAATAGTACAGTATCGGTCAATAAGATATACAAAATCATGTTTTTAAATTGGTTTTCTGCCATTTCGACCTTTTTCAGAAGGTTTTCTAGTTTCCGGTAACTTCAAGGACTCTGGTGGGTAAAAAACACATTTTCAGAAAACTTGAGAAGAGAAAAGAATTGAGAAGATCAAGAAAACCATACCCCAGGAATACAAAAAAAGAAGAAATATTTGTCTTCCAGAACTTTCTGTACTTGTCTAGACAGTCCGGAAAGTTTGAAGTATGCGGATTCAAAACGGGGCTAATAACTACTTTTTTTCAGTGGTGTGTGTTTGTGTTGGGCATGGTCAAATTATGTGATTCGAGCTGCAATGCGCTAGTCAATTGTCTTCGTATTTTAAATCCTATTGTCCTCATTGTTGCATGTGGGGTATTTATCGTGTTCTGCAGGTTTCTGTAGAGTATGARGACTCAGCTACAGTGAGGAATAACGGGTGGACAAGATGGAAAATTGGGGCTAATTTAGAAAATAAAAATTTTCGAAAAAAAACATCTTAAAAACTGTAATATAGCGGCCTATACTTGCCTATACTTGCACTTTCAGTTTGATTATTTCATGTTCTGTGAGAGATATCAACAGTGGGCTTACTACGAAAATTTTGGTGATATTATGATAAAAAGTTTATCAGTTTTCCAAAATTTTCTACTGAAATTGAGATAATGGAGCTCAAAGTGGGTGTTACGGTTGGCGTCTCTATTGCAGTGTTTACTGCACTTTTAGAATTTTGAGACTCTCGCTAGAAATTCATTTTCAGGCTTCAATTTTAATTTGGAAAACATCCCTGAAGACCTTTTTAGGAATAATAAAACTCCGACAAAAAAGTGGACAATTTACAAATAATTGGGGATAATTTTAGAAAAAAACTCAGAATATTTGCAAAAAATCCATTTTAGATATTTTCAGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAGTCAATTGTCTTCGTATTT</pcr_primer_p1>
		<pcr_primer_p2>CAAACTGAAAGTGCAAGTATAGG</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>GCTAGTCAATTGTCTTCGTATTTTAAATCCTATTGTCCTCATTGTTGCATGTGGGGTATTTATCGTGTTCTGCAGGTTTCTGTAGAGTATGAAGACTCAGCTACAGTGAGGAATAACGGGTGGACAAGATGGAAAATTGGGGCTAATTTAGAAAATAAAAATTTTCGAAAAAAAACATCTTAAAAACTGTAATATAGCGGCCTATACTTGCCTATACTTGCACTTTCAGTTTG</canonical_amplicon>
		<polymorphic_amplicon>GCTAGTCAATTGTCTTCGTATTTTAAATCCTATTGTCCTCATTGTTGCATGTGGGGTATTTATCGTGTTCTGCAGGTTTCTGTAGAGTATGARGACTCAGCTACAGTGAGGAATAACGGGTGGACAAGATGGAAAATTGGGGCTAATTTAGAAAATAAAAATTTTCGAAAAAAAACATCTTAAAAACTGTAATATAGCGGCCTATACTTGCCTATACTTGCACTTTCAGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14385</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>133744</contig_pos>
        <strand>+</strand>
        <context>ATTCCTCAAT[C/T]TACCCGTTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACACTTTATTCATCACTCTAAACTACCCCCTACTGAAAAAATTCCTCAAT</left_flank>
        <right_flank>TACCCGTTCCAAATTCAATATTCCCCAGATTCGATAAATTCTGGATTAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTCAAATTCAGAAAGCAGCTCCAAATCTTAGAGTGAGTGAAAACCGAGTGACCATAACCATATGTATTCTATTCTGTTCTAGGCGCCACCTGCTGAGATAGACTGCGATTTAGCTACGTACGCTGAAATGTGTCTCAACCTTGTTGATATTCCTGTTGGAGACAGTCTCATCGAGTCACTTCATTTAATGTTTGACACATTCATTCAATTCAAAAAGTCACAACATTTCAAGAACTTGGAGTACAATTTGGATCTTTTAAAAGAGAAGAAAGAGAAGATTGATGTTTTAGAACTCTAACGTGACAAGCCACACTTTTGCCATCAAGTCAGTTTTGCTGATAACAGCCTGTCACAACTCTTCTTGTCTCTTTTTTCCTCCAATTTTTGTTCTTCTCCGTTTCCCACCCAACAACCGCAATAACTCGTATAATCTTTAATGTTAACAAAACACTTTATTCATCACTCTAAACTACCCCCTACTGAAAAAATTCCTCAATCTACCCGTTCCAAATTCAATATTCCCCAGATTCGATAAATTCTGGATTAATCCTTAATCAACATATATGTATGCGTAAAATGCAAAAAAAACCTATTTATCTATTTGCCCTGAACTCTCCTAAATTAATATATATATATATATATATATATATATATATATATACTCCTCAATCGATTTAATGTACCTATATTTATTCAGTCTTGTGAAAATATTTATTCGTCAATAAATACTCGGAATAAAGATCATTTTTTTCAGATTAAAATATTTCTAATAAAATTTTAAAAATTCCAAACTTTGAAAATTTGGACAACTGTGTCTGATTGAATAATTTAAAAATTGGAATTGTCCAAAAATCGAAATTCTGTCCGATTTACTGATTTTCGTTTTTGTTTTTAAATCTCAAATTTTCAAAGACAAAAATTCTATAAATTCAAAACTCTGAAAATTGAAAAAAAGTAGAAAGAAAAAAATGTCAAAATTTTTTTCCCTTTTCGTTAAT</canonical>
            <polymorphic>TGCTCAAATTCAGAAAGCAGCTCCAAATCTTAGAGTGAGTGAAAACCGAGTGACCATAACCATATGTATTCTATTCTGTTCTAGGCGCCACCTGCTGAGATAGACTGCGATTTAGCTACGTACGCTGAAATGTGTCTCAACCTTGTTGATATTCCTGTTGGAGACAGTCTCATCGAGTCACTTCATTTAATGTTTGACACATTCATTCAATTCAAAAAGTCACAACATTTCAAGAACTTGGAGTACAATTTGGATCTTTTAAAAGAGAAGAAAGAGAAGATTGATGTTTTAGAACTCTAACGTGACAAGCCACACTTTTGCCATCAAGTCAGTTTTGCTGATAACAGCCTGTCACAACTCTTCTTGTCTCTTTTTTCCTCCAATTTTTGTTCTTCTCCGTTTCCCACCCAACAACCGCAATAACTCGTATAATCTTTAATGTTAACAAAACACTTTATTCATCACTCTAAACTACCCCCTACTGAAAAAATTCCTCAATYTACCCGTTCCAAATTCAATATTCCCCAGATTCGATAAATTCTGGATTAATCCTTAATCAACATATATGTATGCGTAAAATGCAAAAAAAACCTATTTATCTATTTGCCCTGAACTCTCCTAAATTAATATATATATATATATATATATATATATATATATATACTCCTCAATCGATTTAATGTACCTATATTTATTCAGTCTTGTGAAAATATTTATTCGTCAATAAATACTCGGAATAAAGATCATTTTTTTCAGATTAAAATATTTCTAATAAAATTTTAAAAATTCCAAACTTTGAAAATTTGGACAACTGTGTCTGATTGAATAATTTAAAAATTGGAATTGTCCAAAAATCGAAATTCTGTCCGATTTACTGATTTTCGTTTTTGTTTTTAAATCTCAAATTTTCAAAGACAAAAATTCTATAAATTCAAAACTCTGAAAATTGAAAAAAAGTAGAAAGAAAAAAATGTCAAAATTTTTTTCCCTTTTCGTTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCCTCCAATTTTTGTTCT</pcr_primer_p1>
		<pcr_primer_p2>GAGTTCAGGGCAAATAGATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTTTCCTCCAATTTTTGTTCTTCTCCGTTTCCCACCCAACAACCGCAATAACTCGTATAATCTTTAATGTTAACAAAACACTTTATTCATCACTCTAAACTACCCCCTACTGAAAAAATTCCTCAATCTACCCGTTCCAAATTCAATATTCCCCAGATTCGATAAATTCTGGATTAATCCTTAATCAACATATATGTATGCGTAAAATGCAAAAAAAACCTATTTATCTATTTGCCCTGAACTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCCTCCAATTTTTGTTCTTCTCCGTTTCCCACCCAACAACCGCAATAACTCGTATAATCTTTAATGTTAACAAAACACTTTATTCATCACTCTAAACTACCCCCTACTGAAAAAATTCCTCAATYTACCCGTTCCAAATTCAATATTCCCCAGATTCGATAAATTCTGGATTAATCCTTAATCAACATATATGTATGCGTAAAATGCAAAAAAAACCTATTTATCTATTTGCCCTGAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14386</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>133769</contig_pos>
        <strand>+</strand>
        <context>TCAATATTCC[C/T]CAGATTCGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCCCTACTGAAAAAATTCCTCAATCTACCCGTTCCAAATTCAATATTCC</left_flank>
        <right_flank>CAGATTCGATAAATTCTGGATTAATCCTTAATCAACATATATGTATGCGT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCTTAGAGTGAGTGAAAACCGAGTGACCATAACCATATGTATTCTATTCTGTTCTAGGCGCCACCTGCTGAGATAGACTGCGATTTAGCTACGTACGCTGAAATGTGTCTCAACCTTGTTGATATTCCTGTTGGAGACAGTCTCATCGAGTCACTTCATTTAATGTTTGACACATTCATTCAATTCAAAAAGTCACAACATTTCAAGAACTTGGAGTACAATTTGGATCTTTTAAAAGAGAAGAAAGAGAAGATTGATGTTTTAGAACTCTAACGTGACAAGCCACACTTTTGCCATCAAGTCAGTTTTGCTGATAACAGCCTGTCACAACTCTTCTTGTCTCTTTTTTCCTCCAATTTTTGTTCTTCTCCGTTTCCCACCCAACAACCGCAATAACTCGTATAATCTTTAATGTTAACAAAACACTTTATTCATCACTCTAAACTACCCCCTACTGAAAAAATTCCTCAATCTACCCGTTCCAAATTCAATATTCCCCAGATTCGATAAATTCTGGATTAATCCTTAATCAACATATATGTATGCGTAAAATGCAAAAAAAACCTATTTATCTATTTGCCCTGAACTCTCCTAAATTAATATATATATATATATATATATATATATATATATATACTCCTCAATCGATTTAATGTACCTATATTTATTCAGTCTTGTGAAAATATTTATTCGTCAATAAATACTCGGAATAAAGATCATTTTTTTCAGATTAAAATATTTCTAATAAAATTTTAAAAATTCCAAACTTTGAAAATTTGGACAACTGTGTCTGATTGAATAATTTAAAAATTGGAATTGTCCAAAAATCGAAATTCTGTCCGATTTACTGATTTTCGTTTTTGTTTTTAAATCTCAAATTTTCAAAGACAAAAATTCTATAAATTCAAAACTCTGAAAATTGAAAAAAAGTAGAAAGAAAAAAATGTCAAAATTTTTTTCCCTTTTCGTTAATCCCACAGAAGTTAAAATTCTCTTAT</canonical>
            <polymorphic>AATCTTAGAGTGAGTGAAAACCGAGTGACCATAACCATATGTATTCTATTCTGTTCTAGGCGCCACCTGCTGAGATAGACTGCGATTTAGCTACGTACGCTGAAATGTGTCTCAACCTTGTTGATATTCCTGTTGGAGACAGTCTCATCGAGTCACTTCATTTAATGTTTGACACATTCATTCAATTCAAAAAGTCACAACATTTCAAGAACTTGGAGTACAATTTGGATCTTTTAAAAGAGAAGAAAGAGAAGATTGATGTTTTAGAACTCTAACGTGACAAGCCACACTTTTGCCATCAAGTCAGTTTTGCTGATAACAGCCTGTCACAACTCTTCTTGTCTCTTTTTTCCTCCAATTTTTGTTCTTCTCCGTTTCCCACCCAACAACCGCAATAACTCGTATAATCTTTAATGTTAACAAAACACTTTATTCATCACTCTAAACTACCCCCTACTGAAAAAATTCCTCAATCTACCCGTTCCAAATTCAATATTCCYCAGATTCGATAAATTCTGGATTAATCCTTAATCAACATATATGTATGCGTAAAATGCAAAAAAAACCTATTTATCTATTTGCCCTGAACTCTCCTAAATTAATATATATATATATATATATATATATATATATATATACTCCTCAATCGATTTAATGTACCTATATTTATTCAGTCTTGTGAAAATATTTATTCGTCAATAAATACTCGGAATAAAGATCATTTTTTTCAGATTAAAATATTTCTAATAAAATTTTAAAAATTCCAAACTTTGAAAATTTGGACAACTGTGTCTGATTGAATAATTTAAAAATTGGAATTGTCCAAAAATCGAAATTCTGTCCGATTTACTGATTTTCGTTTTTGTTTTTAAATCTCAAATTTTCAAAGACAAAAATTCTATAAATTCAAAACTCTGAAAATTGAAAAAAAGTAGAAAGAAAAAAATGTCAAAATTTTTTTCCCTTTTCGTTAATCCCACAGAAGTTAAAATTCTCTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCTAAACTACCCCCTACTGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCACAAGACTGAATAAATATAGG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTCTAAACTACCCCCTACTGAAAAAATTCCTCAATCTACCCGTTCCAAATTCAATATTCCCCAGATTCGATAAATTCTGGATTAATCCTTAATCAACATATATGTATGCGTAAAATGCAAAAAAAACCTATTTATCTATTTGCCCTGAACTCTCCTAAATTAATATATATATATATATATATATATATATATATATATACTCCTCAATCGATTTAATGTACCTATATTTATTCAGTCTTGTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACTCTAAACTACCCCCTACTGAAAAAATTCCTCAATCTACCCGTTCCAAATTCAATATTCCYCAGATTCGATAAATTCTGGATTAATCCTTAATCAACATATATGTATGCGTAAAATGCAAAAAAAACCTATTTATCTATTTGCCCTGAACTCTCCTAAATTAATATATATATATATATATATATATATATATATATATACTCCTCAATCGATTTAATGTACCTATATTTATTCAGTCTTGTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14387</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>133834</contig_pos>
        <strand>+</strand>
        <context>TGCAAAAAAA[A/T]CCTATTTATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTGGATTAATCCTTAATCAACATATATGTATGCGTAAAATGCAAAAAAA</left_flank>
        <right_flank>CCTATTTATCTATTTGCCCTGAACTCTCCTAAATTAATATATATATATAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGCTGAGATAGACTGCGATTTAGCTACGTACGCTGAAATGTGTCTCAACCTTGTTGATATTCCTGTTGGAGACAGTCTCATCGAGTCACTTCATTTAATGTTTGACACATTCATTCAATTCAAAAAGTCACAACATTTCAAGAACTTGGAGTACAATTTGGATCTTTTAAAAGAGAAGAAAGAGAAGATTGATGTTTTAGAACTCTAACGTGACAAGCCACACTTTTGCCATCAAGTCAGTTTTGCTGATAACAGCCTGTCACAACTCTTCTTGTCTCTTTTTTCCTCCAATTTTTGTTCTTCTCCGTTTCCCACCCAACAACCGCAATAACTCGTATAATCTTTAATGTTAACAAAACACTTTATTCATCACTCTAAACTACCCCCTACTGAAAAAATTCCTCAATCTACCCGTTCCAAATTCAATATTCCCCAGATTCGATAAATTCTGGATTAATCCTTAATCAACATATATGTATGCGTAAAATGCAAAAAAAACCTATTTATCTATTTGCCCTGAACTCTCCTAAATTAATATATATATATATATATATATATATATATATATATACTCCTCAATCGATTTAATGTACCTATATTTATTCAGTCTTGTGAAAATATTTATTCGTCAATAAATACTCGGAATAAAGATCATTTTTTTCAGATTAAAATATTTCTAATAAAATTTTAAAAATTCCAAACTTTGAAAATTTGGACAACTGTGTCTGATTGAATAATTTAAAAATTGGAATTGTCCAAAAATCGAAATTCTGTCCGATTTACTGATTTTCGTTTTTGTTTTTAAATCTCAAATTTTCAAAGACAAAAATTCTATAAATTCAAAACTCTGAAAATTGAAAAAAAGTAGAAAGAAAAAAATGTCAAAATTTTTTTCCCTTTTCGTTAATCCCACAGAAGTTAAAATTCTCTTATAAGGGATATCCTAACAGTAACTTTTCATTTCCACTATTGTTTTTATGAAAAAGAAAGAGGTCATG</canonical>
            <polymorphic>CCTGCTGAGATAGACTGCGATTTAGCTACGTACGCTGAAATGTGTCTCAACCTTGTTGATATTCCTGTTGGAGACAGTCTCATCGAGTCACTTCATTTAATGTTTGACACATTCATTCAATTCAAAAAGTCACAACATTTCAAGAACTTGGAGTACAATTTGGATCTTTTAAAAGAGAAGAAAGAGAAGATTGATGTTTTAGAACTCTAACGTGACAAGCCACACTTTTGCCATCAAGTCAGTTTTGCTGATAACAGCCTGTCACAACTCTTCTTGTCTCTTTTTTCCTCCAATTTTTGTTCTTCTCCGTTTCCCACCCAACAACCGCAATAACTCGTATAATCTTTAATGTTAACAAAACACTTTATTCATCACTCTAAACTACCCCCTACTGAAAAAATTCCTCAATCTACCCGTTCCAAATTCAATATTCCCCAGATTCGATAAATTCTGGATTAATCCTTAATCAACATATATGTATGCGTAAAATGCAAAAAAAWCCTATTTATCTATTTGCCCTGAACTCTCCTAAATTAATATATATATATATATATATATATATATATATATATACTCCTCAATCGATTTAATGTACCTATATTTATTCAGTCTTGTGAAAATATTTATTCGTCAATAAATACTCGGAATAAAGATCATTTTTTTCAGATTAAAATATTTCTAATAAAATTTTAAAAATTCCAAACTTTGAAAATTTGGACAACTGTGTCTGATTGAATAATTTAAAAATTGGAATTGTCCAAAAATCGAAATTCTGTCCGATTTACTGATTTTCGTTTTTGTTTTTAAATCTCAAATTTTCAAAGACAAAAATTCTATAAATTCAAAACTCTGAAAATTGAAAAAAAGTAGAAAGAAAAAAATGTCAAAATTTTTTTCCCTTTTCGTTAATCCCACAGAAGTTAAAATTCTCTTATAAGGGATATCCTAACAGTAACTTTTCATTTCCACTATTGTTTTTATGAAAAAGAAAGAGGTCATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCTAAACTACCCCCTACTGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCACAAGACTGAATAAATATAGG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTCTAAACTACCCCCTACTGAAAAAATTCCTCAATCTACCCGTTCCAAATTCAATATTCCCCAGATTCGATAAATTCTGGATTAATCCTTAATCAACATATATGTATGCGTAAAATGCAAAAAAAACCTATTTATCTATTTGCCCTGAACTCTCCTAAATTAATATATATATATATATATATATATATATATATATATACTCCTCAATCGATTTAATGTACCTATATTTATTCAGTCTTGTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACTCTAAACTACCCCCTACTGAAAAAATTCCTCAATCTACCCGTTCCAAATTCAATATTCCCCAGATTCGATAAATTCTGGATTAATCCTTAATCAACATATATGTATGCGTAAAATGCAAAAAAAWCCTATTTATCTATTTGCCCTGAACTCTCCTAAATTAATATATATATATATATATATATATATATATATATATACTCCTCAATCGATTTAATGTACCTATATTTATTCAGTCTTGTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14425</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>133917</contig_pos>
        <strand>+</strand>
        <context>aCTCCTCAAT[C/T]GATTTAATGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTAATATATATATATATATATATATATATATATATATATACTCCTCAAT</left_flank>
        <right_flank>GATTTAATGTACCTATATTTATTCAGTCTTGTGAAAATATTTATTCGTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAGTCACTTCATTTAATGTTTGACACATTCATTCAATTCAAAAAGTCACAACATTTCAAGAACTTGGAGTACAATTTGGATCTTTTAAAAGAGAAGAAAGAGAAGATTGATGTTTTAGAACTCTAACGTGACAAGCCACACTTTTGCCATCAAGTCAGTTTTGCTGATAACAGCCTGTCACAACTCTTCTTGTCTCTTTTTTCCTCCAATTTTTGTTCTTCTCCGTTTCCCACCCAACAACCGCAATAACTCGTATAATCTTTAATGTTAACAAAACACTTTATTCATCACTCTAAACTACCCCCTACTGAAAAAATTCCTCAATCTACCCGTTCCAAATTCAATATTCCCCAGATTCGATAAATTCTGGATTAATCCTTAATCAACATATATGTATGCGTAAAATGCAAAAAAAACCTATTTATCTATTTGCCCTGAACTCTCCTAAATTAATATATATATATATATATATATATATATATATATATACTCCTCAATCGATTTAATGTACCTATATTTATTCAGTCTTGTGAAAATATTTATTCGTCAATAAATACTCGGAATAAAGATCATTTTTTTCAGATTAAAATATTTCTAATAAAATTTTAAAAATTCCAAACTTTGAAAATTTGGACAACTGTGTCTGATTGAATAATTTAAAAATTGGAATTGTCCAAAAATCGAAATTCTGTCCGATTTACTGATTTTCGTTTTTGTTTTTAAATCTCAAATTTTCAAAGACAAAAATTCTATAAATTCAAAACTCTGAAAATTGAAAAAAAGTAGAAAGAAAAAAATGTCAAAATTTTTTTCCCTTTTCGTTAATCCCACAGAAGTTAAAATTCTCTTATAAGGGATATCCTAACAGTAACTTTTCATTTCCACTATTGTTTTTATGAAAAAGAAAGAGGTCATGGCCTCACTCACACCTTGCCATGTGTGGTTTTCCAATGTAGGAATGTGGCTTCTATAAATGTAGCATACAAACATCTATTTATT</canonical>
            <polymorphic>CGAGTCACTTCATTTAATGTTTGACACATTCATTCAATTCAAAAAGTCACAACATTTCAAGAACTTGGAGTACAATTTGGATCTTTTAAAAGAGAAGAAAGAGAAGATTGATGTTTTAGAACTCTAACGTGACAAGCCACACTTTTGCCATCAAGTCAGTTTTGCTGATAACAGCCTGTCACAACTCTTCTTGTCTCTTTTTTCCTCCAATTTTTGTTCTTCTCCGTTTCCCACCCAACAACCGCAATAACTCGTATAATCTTTAATGTTAACAAAACACTTTATTCATCACTCTAAACTACCCCCTACTGAAAAAATTCCTCAATCTACCCGTTCCAAATTCAATATTCCCCAGATTCGATAAATTCTGGATTAATCCTTAATCAACATATATGTATGCGTAAAATGCAAAAAAAACCTATTTATCTATTTGCCCTGAACTCTCCTAAATTAATATATATATATATATATATATATATATATATATATACTCCTCAATYGATTTAATGTACCTATATTTATTCAGTCTTGTGAAAATATTTATTCGTCAATAAATACTCGGAATAAAGATCATTTTTTTCAGATTAAAATATTTCTAATAAAATTTTAAAAATTCCAAACTTTGAAAATTTGGACAACTGTGTCTGATTGAATAATTTAAAAATTGGAATTGTCCAAAAATCGAAATTCTGTCCGATTTACTGATTTTCGTTTTTGTTTTTAAATCTCAAATTTTCAAAGACAAAAATTCTATAAATTCAAAACTCTGAAAATTGAAAAAAAGTAGAAAGAAAAAAATGTCAAAATTTTTTTCCCTTTTCGTTAATCCCACAGAAGTTAAAATTCTCTTATAAGGGATATCCTAACAGTAACTTTTCATTTCCACTATTGTTTTTATGAAAAAGAAAGAGGTCATGGCCTCACTCACACCTTGCCATGTGTGGTTTTCCAATGTAGGAATGTGGCTTCTATAAATGTAGCATACAAACATCTATTTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>359 317 183 141</canonical_bands>
                <polymorphic_bands>359 324 317</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTATCTATTTGCCCTGAACTC</pcr_primer_p1>
		<pcr_primer_p2>TCCAATTTTTAAATTATTCAATCAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTATCTATTTGCCCTGAACTCTCCTAAATTAATATATATATATATATATATATATATATATATATATACTCCTCAATCGATTTAATGTACCTATATTTATTCAGTCTTGTGAAAATATTTATTCGTCAATAAATACTCGGAATAAAGATCATTTTTTTCAGATTAAAATATTTCTAATAAAATTTTAAAAATTCCAAACTTTGAAAATTTGGACAACTGTGTCTGATTGAATAATTTAAAAATTGGA</canonical_amplicon>
		<polymorphic_amplicon>ATTTATCTATTTGCCCTGAACTCTCCTAAATTAATATATATATATATATATATATATATATATATATATACTCCTCAATYGATTTAATGTACCTATATTTATTCAGTCTTGTGAAAATATTTATTCGTCAATAAATACTCGGAATAAAGATCATTTTTTTCAGATTAAAATATTTCTAATAAAATTTTAAAAATTCCAAACTTTGAAAATTTGGACAACTGTGTCTGATTGAATAATTTAAAAATTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14450</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>137119</contig_pos>
        <strand>+</strand>
        <context>TACCTTGAAA[C/T]TTTTCTCACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCAACAGTTTGCATTTCCATGCCAGCTCAAAGAGTAAGTACCTTGAAA</left_flank>
        <right_flank>TTTTCTCACAAGCTGATTCATCGTTTTCAGTGTTGAAGTTGATGCCGTCC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTGTGTCGTTCGCCTCTTTGCGCATAACGCGCGCACGAAAAACGCACCAATCACCAATCGTTGGCGCGTTTCTTGCGCGCACGGATTTTTTGTAATAAACCGATTTCGCCACTTCGCTCACACCACTTTTTCTTTTTTGTTTCACATGGATAGCTGACGCATACCCCCATTGCTTTATTAAATTCCTCTATCTTCCTAGATATTCCCGTCAGACTGCGCACACAGCCTTCTTTCAATCTTGCTCACACTATACACATGACATATGGACGATACAGGTGATTTCAAAAGGTAAATTGAAGATTTTTCAATTGAAAAAGTTATAGAAGCGATGTGGCAACGCTGTACGACGTATTCTGCGAACTTAGTGCTCCAAAACTAGGTGAAAAACGTGCATCGCTTCGATTCAAGTATCCAGATGATTTTCACGATCCATCAATTGTCAAAAGTATTCAACAGTTTGCATTTCCATGCCAGCTCAAAGAGTAAGTACCTTGAAACTTTTCTCACAAGCTGATTCATCGTTTTCAGTGTTGAAGTTGATGCCGTCCAGCTGTTCAGTTTCGTTCTCACCGACTCGAATTCCAAATTCTCCTTCGGATTCTGTCGTTACACACCGCGGACCGACACGTGCATTTGCTTCTTGAGGTTGGTATCGATTTTTTGGAATCGCAGGGAAATGTTTGTCCAAATTTTTTGTAAAAACAGCACAAAAATGCAGGAAAAAAGGGGCAAAATTCAATTAATAATCTCGTTTGTTCCCTAGGCATTCCAGAAATTTGCGTGGGATTGAGAGAAAAAATTGAGAAAAAGAAAACTAAGAATTTCTGAGCGATGAAAAGTTAAAAAACCAGTGTCGTCATAGGAAATCACATACGAAACTGATGAAAAAAAACCGGAATAAAAATACTTCCCGGAACGATGTGACTTTATGGATTTCTAAGGATCTTAGAGACTTCTGAAAGGTTCAAGGATTTTAGATTTGAATCGATTTGAGTATA</canonical>
            <polymorphic>TTGTGTGTCGTTCGCCTCTTTGCGCATAACGCGCGCACGAAAAACGCACCAATCACCAATCGTTGGCGCGTTTCTTGCGCGCACGGATTTTTTGTAATAAACCGATTTCGCCACTTCGCTCACACCACTTTTTCTTTTTTGTTTCACATGGATAGCTGACGCATACCCCCATTGCTTTATTAAATTCCTCTATCTTCCTAGATATTCCCGTCAGACTGCGCACACAGCCTTCTTTCAATCTTGCTCACACTATACACATGACATATGGACGATACAGGTGATTTCAAAAGGTAAATTGAAGATTTTTCAATTGAAAAAGTTATAGAAGCGATGTGGCAACGCTGTACGACGTATTCTGCGAACTTAGTGCTCCAAAACTAGGTGAAAAACGTGCATCGCTTCGATTCAAGTATCCAGATGATTTTCACGATCCATCAATTGTCAAAAGTATTCAACAGTTTGCATTTCCATGCCAGCTCAAAGAGTAAGTACCTTGAAAYTTTTCTCACAAGCTGATTCATCGTTTTCAGTGTTGAAGTTGATGCCGTCCAGCTGTTCAGTTTCGTTCTCACCGACTCGAATTCCAAATTCTCCTTCGGATTCTGTCGTTACACACCGCGGACCGACACGTGCATTTGCTTCTTGAGGTTGGTATCGATTTTTTGGAATCGCAGGGAAATGTTTGTCCAAATTTTTTGTAAAAACAGCACAAAAATGCAGGAAAAAAGGGGCAAAATTCAATTAATAATCTCGTTTGTTCCCTAGGCATTCCAGAAATTTGCGTGGGATTGAGAGAAAAAATTGAGAAAAAGAAAACTAAGAATTTCTGAGCGATGAAAAGTTAAAAAACCAGTGTCGTCATAGGAAATCACATACGAAACTGATGAAAAAAAACCGGAATAAAAATACTTCCCGGAACGATGTGACTTTATGGATTTCTAAGGATCTTAGAGACTTCTGAAAGGTTCAAGGATTTTAGATTTGAATCGATTTGAGTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAGTATCCAGATGATTTTCAC</pcr_primer_p1>
		<pcr_primer_p2>TCGATACCAACCTCAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TCAAGTATCCAGATGATTTTCACGATCCATCAATTGTCAAAAGTATTCAACAGTTTGCATTTCCATGCCAGCTCAAAGAGTAAGTACCTTGAAACTTTTCTCACAAGCTGATTCATCGTTTTCAGTGTTGAAGTTGATGCCGTCCAGCTGTTCAGTTTCGTTCTCACCGACTCGAATTCCAAATTCTCCTTCGGATTCTGTCGTTACACACCGCGGACCGACACGTGCATTTGCTTCTTGAGGTTGGTATCGA</canonical_amplicon>
		<polymorphic_amplicon>TCAAGTATCCAGATGATTTTCACGATCCATCAATTGTCAAAAGTATTCAACAGTTTGCATTTCCATGCCAGCTCAAAGAGTAAGTACCTTGAAAYTTTTCTCACAAGCTGATTCATCGTTTTCAGTGTTGAAGTTGATGCCGTCCAGCTGTTCAGTTTCGTTCTCACCGACTCGAATTCCAAATTCTCCTTCGGATTCTGTCGTTACACACCGCGGACCGACACGTGCATTTGCTTCTTGAGGTTGGTATCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14451</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>137925</contig_pos>
        <strand>+</strand>
        <context>GATTCGTCGA[C/T]CACAATCCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTATCACACGGACATACCAAACATTGATGAGTATCTTCGATTCGTCGA</left_flank>
        <right_flank>CACAATCCAAAGGTAATTATGGATGAAGATGAAGCTAAAAACAAAAGAGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAGAAAACTAAGAATTTCTGAGCGATGAAAAGTTAAAAAACCAGTGTCGTCATAGGAAATCACATACGAAACTGATGAAAAAAAACCGGAATAAAAATACTTCCCGGAACGATGTGACTTTATGGATTTCTAAGGATCTTAGAGACTTCTGAAAGGTTCAAGGATTTTAGATTTGAATCGATTTGAGTATAACAATAATTTTTAATTTATTCCATCCTTTATCCGCCGTGAATCAACACAACATCCTTAAATCGACACACACGTCGGGTCTCAAGACGAAGAATGAAAATTCACTAATTTAGCGATTTCTCAGCAGCGTAGCAAACTTCAAATTACATATTTCCAGCGGATTCTTCTGGCCAAATGTTTTCTTCAAGGCGCTCAACGACATCTCATTGGTTATGGGTTCCGCTCAACAGGAGGACGTCGAGTCGGTGCTCACAAAATTCTATCACACGGACATACCAAACATTGATGAGTATCTTCGATTCGTCGACCACAATCCAAAGGTAATTATGGATGAAGATGAAGCTAAAAACAAAAGAGCAAAATGAATTTCGGCACATTTAAGTAAACTTTTCACGGCCGGGCCTGGCTGTGTCGAAACTAAAAATTTTCCGATCTGGCCCGGCCCTATCGGCTCTGGTCTGATTATGAAAATTTCAAATTCTGAAGTCCTTGCGAATTTTTAAAAGCTTTTTATGAATATTTCAAGACATTTTCTTCAAAATGGAATTCGATAGATGATTTTTCAAAATATTGCTACCTGCAGTGACCGGGCCTGGCCGAGCCGGTTAACTGGGTTGGCCTGGAATTTGACAAGTATGCACTTAAAAAACATTGTTTTTTTTTCAGCACAACTATCGAATTGTATTCGCCGAGAAGATTCCAGACCCAACTCGACTGCCAACATTGAGTTCGGACAAGTACTTCCTCGAGTTCTACAATGCCATCGATCCACGACAGACGCTTGCAATCTTTGCCAGTCTTCTGAAGG</canonical>
            <polymorphic>AAAAAGAAAACTAAGAATTTCTGAGCGATGAAAAGTTAAAAAACCAGTGTCGTCATAGGAAATCACATACGAAACTGATGAAAAAAAACCGGAATAAAAATACTTCCCGGAACGATGTGACTTTATGGATTTCTAAGGATCTTAGAGACTTCTGAAAGGTTCAAGGATTTTAGATTTGAATCGATTTGAGTATAACAATAATTTTTAATTTATTCCATCCTTTATCCGCCGTGAATCAACACAACATCCTTAAATCGACACACACGTCGGGTCTCAAGACGAAGAATGAAAATTCACTAATTTAGCGATTTCTCAGCAGCGTAGCAAACTTCAAATTACATATTTCCAGCGGATTCTTCTGGCCAAATGTTTTCTTCAAGGCGCTCAACGACATCTCATTGGTTATGGGTTCCGCTCAACAGGAGGACGTCGAGTCGGTGCTCACAAAATTCTATCACACGGACATACCAAACATTGATGAGTATCTTCGATTCGTCGAYCACAATCCAAAGGTAATTATGGATGAAGATGAAGCTAAAAACAAAAGAGCAAAATGAATTTCGGCACATTTAAGTAAACTTTTCACGGCCGGGCCTGGCTGTGTCGAAACTAAAAATTTTCCGATCTGGCCCGGCCCTATCGGCTCTGGTCTGATTATGAAAATTTCAAATTCTGAAGTCCTTGCGAATTTTTAAAAGCTTTTTATGAATATTTCAAGACATTTTCTTCAAAATGGAATTCGATAGATGATTTTTCAAAATATTGCTACCTGCAGTGACCGGGCCTGGCCGAGCCGGTTAACTGGGTTGGCCTGGAATTTGACAAGTATGCACTTAAAAAACATTGTTTTTTTTTCAGCACAACTATCGAATTGTATTCGCCGAGAAGATTCCAGACCCAACTCGACTGCCAACATTGAGTTCGGACAAGTACTTCCTCGAGTTCTACAATGCCATCGATCCACGACAGACGCTTGCAATCTTTGCCAGTCTTCTGAAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>497 302 201</canonical_bands>
                <polymorphic_bands>799 201</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>497 223 201 79</canonical_bands>
                <polymorphic_bands>576 223 201</polymorphic_bands>
            </assay>
            <assay>
                <site>GTCGAC</site>
                <isoschizomers>
                    <enzyme>SalI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCGTAGCAAACTTCAAATTAC</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCATTTTGCTCTTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGCGTAGCAAACTTCAAATTACATATTTCCAGCGGATTCTTCTGGCCAAATGTTTTCTTCAAGGCGCTCAACGACATCTCATTGGTTATGGGTTCCGCTCAACAGGAGGACGTCGAGTCGGTGCTCACAAAATTCTATCACACGGACATACCAAACATTGATGAGTATCTTCGATTCGTCGACCACAATCCAAAGGTAATTATGGATGAAGATGAAGCTAAAAACAAAAGAGCAAAATGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>AGCGTAGCAAACTTCAAATTACATATTTCCAGCGGATTCTTCTGGCCAAATGTTTTCTTCAAGGCGCTCAACGACATCTCATTGGTTATGGGTTCCGCTCAACAGGAGGACGTCGAGTCGGTGCTCACAAAATTCTATCACACGGACATACCAAACATTGATGAGTATCTTCGATTCGTCGAYCACAATCCAAAGGTAATTATGGATGAAGATGAAGCTAAAAACAAAAGAGCAAAATGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14452</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>164688</contig_pos>
        <strand></strand>
        <context>TTGTTTCTAG[A/G]RTGATAAMGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGATATGAAAGTTTTTTTTTCAAGTGGATGTGGAGATTGTTTGTTTCTAG</left_flank>
        <right_flank>ATGATAACGGTAAATTGATTATAACAGTTTTTCCGAGTTAAATGATTTGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATCACAAAAAAAGATTCGCTGTGAGAATGCTGTAAAACCTTTTGGGCCGAGTTGAGTTTTCCTTCCTTTTTAGAGTCAAACTATAGTTTTTTTTCAGAAATCGATGTGATCTCTGCACCTTAATCTTTAAAAACGATGGGAATGCCGTTGGTTGATTGAGATACATATCATGGACCAGGATTAGTATTGTGATGGTCCTAAATGATCAATTGATACTGGATGGATAATTGTTCGAACGTAAGTTCAAACTTTGTTTTTTCAGAGTCAAGAAGTATTTTTTTTTCAGATGCAGACATATTCGTCATATCCTATCTAACGACACCAAAAAATAAGGGACCAGGGGTTCAACAACCAGCATATGCCAAAATTATACACTTCCCGAGGAAGCTGCCGATACTGTTATTATTTCGGAAATTTCGTTCTTGGATGTCATTTGTTTAATTTCGAGGATATGAAAGTTTTTTTTTCAAGTGGATGTGGAGATTGTTTGTTTCTAGAATGATAACGGTAAATTGATTATAACAGTTTTTCCGAGTTAAATGATTTGTATTTTTTTCAGAAATTGATGTTATTTTCAGTTGAAGTCGAGTTGGTCAACCTTCAACCGATTGACGTAAAGGAATTATCCCAATAACAATTTGGATAACATGGAACTTCATCGAATGGTGTTTTGTACGTTGCAGAAACCGGGACTTTGTTGGGGAAAGTCAATATTTCCTTCTTCATTCCCAGTAACTATTGTTACAAAAATTGACTGAATCGTTTTCCGAATTTTTATTAATTATACGTTTCCTTAACCTCACTTCCCTTTTTGTTGTATTGTTTTTTTTTCGCCTTCTCCTAAATTCATTTTAGTTTTTTAAACAAATTTTTTTTTCAACTTTTCTTATTTGTATCTTGAATCTTTATTGTTTTTTCGTTATGTTACCGCATATCTTATCCTCTTTGTTTTACTGAGTTTCTCTAATTGATTCTTTATATCAATCGGTTTTATTCCT</canonical>
            <polymorphic>AAATCACAAAAAAAGATTCGCTGTGAGAATGCTGTAAAACCTTTTGGGCCGAGTTGAGTTTTCCTTCCTTTTTAGAGTCAAACTATAGTTTTTTTTCAGAAATCGATGTGATCTCTGCACCTTAATCTTTAAAAACGATGGGAATGCCGTTGGTTGATTGAGATACATATCATGGACCAGGATTAGTATTGTGATGGTCCTAAATGATCAATTGATACTGGATGGATAATTGTTCGAACGTAAGTTCAAACTTTGTTTTTTCAGAGTCAAGAAGTATTTTTTTTTCAGATGCAGACATATTCGTCATATCCTATCTAACGACACCAAAAAATAAGGGACCAGGGGTTCAACAACCAGCATATGCCAAAATTATACACTTCCCGAGGAAGCTGCCGATACTGTTATTATTTCGGAAATTTCGTTCTTGGATGTCATTTGTTTAATTTCGAGGATATGAAAGTTTTTTTTTCAAGTGGATGTGGAGATTGTTTGTTTCTAGRATGATAACGGTAAATTGATTATAACAGTTTTTCCGAGTTAAATGATTTGTATTTTTTTCAGAAATTGATGTTATTTTCAGTTGAAGTCGAGTTGGTCAACCTTCAACCGATTGACGTAAAGGAATTATCCCAATAACAATTTGGATAACATGGAACTTCATCGAATGGTGTTTTGTACGTTGCAGAAACCGGGACTTTGTTGGGGAAAGTCAATATTTCCTTCTTCATTCCCAGTAACTATTGTTACAAAAATTGACTGAATCGTTTTCCGAATTTTTATTAATTATACGTTTCCTTAACCTCACTTCCCTTTTTGTTGTATTGTTTTTTTTTCGCCTTCTCCTAAATTCATTTTAGTTTTTTAAACAAATTTTTTTTTCAACTTTTCTTATTTGTATCTTGAATCTTTATTGTTTTTTCGTTATGTTACCGCATATCTTATCCTCTTTGTTTTACTGAGTTTCTCTAATTGATTCTTTATATCAATCGGTTTTATTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>403 268 116 112 101</canonical_bands>
                <polymorphic_bands>519 268 112 101</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTGCCGATACTGTTATTATTT</pcr_primer_p1>
		<pcr_primer_p2>GTTATTGGGATAATTCCTTTACG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTGCCGATACTGTTATTATTTCGGAAATTTCGTTCTTGGATGTCATTTGTTTAATTTCGAGGATATGAAAGTTTTTTTTTCAAGTGGATGTGGAGATTGTTTGTTTCTAGAATGATAACGGTAAATTGATTATAACAGTTTTTCCGAGTTAAATGATTTGTATTTTTTTCAGAAATTGATGTTATTTTCAGTTGAAGTCGAGTTGGTCAACCTTCAACCGATTGACGTAAAGGAATTATCCCAATAAC</canonical_amplicon>
		<polymorphic_amplicon>GCTGCCGATACTGTTATTATTTCGGAAATTTCGTTCTTGGATGTCATTTGTTTAATTTCGAGGATATGAAAGTTTTTTTTTCAAGTGGATGTGGAGATTGTTTGTTTCTAGRATGATAACGGTAAATTGATTATAACAGTTTTTCCGAGTTAAATGATTTGTATTTTTTTCAGAAATTGATGTTATTTTCAGTTGAAGTCGAGTTGGTCAACCTTCAACCGATTGACGTAAAGGAATTATCCCAATAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14453</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>164689</contig_pos>
        <strand></strand>
        <context>TGTTTCTAGR[A/G]TGATAAMGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATATGAAAGTTTTTTTTTCAAGTGGATGTGGAGATTGTTTGTTTCTAGA</left_flank>
        <right_flank>TGATAACGGTAAATTGATTATAACAGTTTTTCCGAGTTAAATGATTTGTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCACAAAAAAAGATTCGCTGTGAGAATGCTGTAAAACCTTTTGGGCCGAGTTGAGTTTTCCTTCCTTTTTAGAGTCAAACTATAGTTTTTTTTCAGAAATCGATGTGATCTCTGCACCTTAATCTTTAAAAACGATGGGAATGCCGTTGGTTGATTGAGATACATATCATGGACCAGGATTAGTATTGTGATGGTCCTAAATGATCAATTGATACTGGATGGATAATTGTTCGAACGTAAGTTCAAACTTTGTTTTTTCAGAGTCAAGAAGTATTTTTTTTTCAGATGCAGACATATTCGTCATATCCTATCTAACGACACCAAAAAATAAGGGACCAGGGGTTCAACAACCAGCATATGCCAAAATTATACACTTCCCGAGGAAGCTGCCGATACTGTTATTATTTCGGAAATTTCGTTCTTGGATGTCATTTGTTTAATTTCGAGGATATGAAAGTTTTTTTTTCAAGTGGATGTGGAGATTGTTTGTTTCTAGAATGATAACGGTAAATTGATTATAACAGTTTTTCCGAGTTAAATGATTTGTATTTTTTTCAGAAATTGATGTTATTTTCAGTTGAAGTCGAGTTGGTCAACCTTCAACCGATTGACGTAAAGGAATTATCCCAATAACAATTTGGATAACATGGAACTTCATCGAATGGTGTTTTGTACGTTGCAGAAACCGGGACTTTGTTGGGGAAAGTCAATATTTCCTTCTTCATTCCCAGTAACTATTGTTACAAAAATTGACTGAATCGTTTTCCGAATTTTTATTAATTATACGTTTCCTTAACCTCACTTCCCTTTTTGTTGTATTGTTTTTTTTTCGCCTTCTCCTAAATTCATTTTAGTTTTTTAAACAAATTTTTTTTTCAACTTTTCTTATTTGTATCTTGAATCTTTATTGTTTTTTCGTTATGTTACCGCATATCTTATCCTCTTTGTTTTACTGAGTTTCTCTAATTGATTCTTTATATCAATCGGTTTTATTCCTA</canonical>
            <polymorphic>AATCACAAAAAAAGATTCGCTGTGAGAATGCTGTAAAACCTTTTGGGCCGAGTTGAGTTTTCCTTCCTTTTTAGAGTCAAACTATAGTTTTTTTTCAGAAATCGATGTGATCTCTGCACCTTAATCTTTAAAAACGATGGGAATGCCGTTGGTTGATTGAGATACATATCATGGACCAGGATTAGTATTGTGATGGTCCTAAATGATCAATTGATACTGGATGGATAATTGTTCGAACGTAAGTTCAAACTTTGTTTTTTCAGAGTCAAGAAGTATTTTTTTTTCAGATGCAGACATATTCGTCATATCCTATCTAACGACACCAAAAAATAAGGGACCAGGGGTTCAACAACCAGCATATGCCAAAATTATACACTTCCCGAGGAAGCTGCCGATACTGTTATTATTTCGGAAATTTCGTTCTTGGATGTCATTTGTTTAATTTCGAGGATATGAAAGTTTTTTTTTCAAGTGGATGTGGAGATTGTTTGTTTCTAGARTGATAACGGTAAATTGATTATAACAGTTTTTCCGAGTTAAATGATTTGTATTTTTTTCAGAAATTGATGTTATTTTCAGTTGAAGTCGAGTTGGTCAACCTTCAACCGATTGACGTAAAGGAATTATCCCAATAACAATTTGGATAACATGGAACTTCATCGAATGGTGTTTTGTACGTTGCAGAAACCGGGACTTTGTTGGGGAAAGTCAATATTTCCTTCTTCATTCCCAGTAACTATTGTTACAAAAATTGACTGAATCGTTTTCCGAATTTTTATTAATTATACGTTTCCTTAACCTCACTTCCCTTTTTGTTGTATTGTTTTTTTTTCGCCTTCTCCTAAATTCATTTTAGTTTTTTAAACAAATTTTTTTTTCAACTTTTCTTATTTGTATCTTGAATCTTTATTGTTTTTTCGTTATGTTACCGCATATCTTATCCTCTTTGTTTTACTGAGTTTCTCTAATTGATTCTTTATATCAATCGGTTTTATTCCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTGCCGATACTGTTATTATTT</pcr_primer_p1>
		<pcr_primer_p2>GTTATTGGGATAATTCCTTTACG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTGCCGATACTGTTATTATTTCGGAAATTTCGTTCTTGGATGTCATTTGTTTAATTTCGAGGATATGAAAGTTTTTTTTTCAAGTGGATGTGGAGATTGTTTGTTTCTAGAATGATAACGGTAAATTGATTATAACAGTTTTTCCGAGTTAAATGATTTGTATTTTTTTCAGAAATTGATGTTATTTTCAGTTGAAGTCGAGTTGGTCAACCTTCAACCGATTGACGTAAAGGAATTATCCCAATAAC</canonical_amplicon>
		<polymorphic_amplicon>GCTGCCGATACTGTTATTATTTCGGAAATTTCGTTCTTGGATGTCATTTGTTTAATTTCGAGGATATGAAAGTTTTTTTTTCAAGTGGATGTGGAGATTGTTTGTTTCTAGARTGATAACGGTAAATTGATTATAACAGTTTTTCCGAGTTAAATGATTTGTATTTTTTTCAGAAATTGATGTTATTTTCAGTTGAAGTCGAGTTGGTCAACCTTCAACCGATTGACGTAAAGGAATTATCCCAATAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14454</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>164696</contig_pos>
        <strand>+</strand>
        <context>AGRRTGATAA[A/C]GGTAAATTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGTTTTTTTTTCAAGTGGATGTGGAGATTGTTTGTTTCTAGAATGATAA</left_flank>
        <right_flank>GGTAAATTGATTATAACAGTTTTTCCGAGTTAAATGATTTGTATTTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAGATTCGCTGTGAGAATGCTGTAAAACCTTTTGGGCCGAGTTGAGTTTTCCTTCCTTTTTAGAGTCAAACTATAGTTTTTTTTCAGAAATCGATGTGATCTCTGCACCTTAATCTTTAAAAACGATGGGAATGCCGTTGGTTGATTGAGATACATATCATGGACCAGGATTAGTATTGTGATGGTCCTAAATGATCAATTGATACTGGATGGATAATTGTTCGAACGTAAGTTCAAACTTTGTTTTTTCAGAGTCAAGAAGTATTTTTTTTTCAGATGCAGACATATTCGTCATATCCTATCTAACGACACCAAAAAATAAGGGACCAGGGGTTCAACAACCAGCATATGCCAAAATTATACACTTCCCGAGGAAGCTGCCGATACTGTTATTATTTCGGAAATTTCGTTCTTGGATGTCATTTGTTTAATTTCGAGGATATGAAAGTTTTTTTTTCAAGTGGATGTGGAGATTGTTTGTTTCTAGAATGATAACGGTAAATTGATTATAACAGTTTTTCCGAGTTAAATGATTTGTATTTTTTTCAGAAATTGATGTTATTTTCAGTTGAAGTCGAGTTGGTCAACCTTCAACCGATTGACGTAAAGGAATTATCCCAATAACAATTTGGATAACATGGAACTTCATCGAATGGTGTTTTGTACGTTGCAGAAACCGGGACTTTGTTGGGGAAAGTCAATATTTCCTTCTTCATTCCCAGTAACTATTGTTACAAAAATTGACTGAATCGTTTTCCGAATTTTTATTAATTATACGTTTCCTTAACCTCACTTCCCTTTTTGTTGTATTGTTTTTTTTTCGCCTTCTCCTAAATTCATTTTAGTTTTTTAAACAAATTTTTTTTTCAACTTTTCTTATTTGTATCTTGAATCTTTATTGTTTTTTCGTTATGTTACCGCATATCTTATCCTCTTTGTTTTACTGAGTTTCTCTAATTGATTCTTTATATCAATCGGTTTTATTCCTATATCTTA</canonical>
            <polymorphic>AAAAAAGATTCGCTGTGAGAATGCTGTAAAACCTTTTGGGCCGAGTTGAGTTTTCCTTCCTTTTTAGAGTCAAACTATAGTTTTTTTTCAGAAATCGATGTGATCTCTGCACCTTAATCTTTAAAAACGATGGGAATGCCGTTGGTTGATTGAGATACATATCATGGACCAGGATTAGTATTGTGATGGTCCTAAATGATCAATTGATACTGGATGGATAATTGTTCGAACGTAAGTTCAAACTTTGTTTTTTCAGAGTCAAGAAGTATTTTTTTTTCAGATGCAGACATATTCGTCATATCCTATCTAACGACACCAAAAAATAAGGGACCAGGGGTTCAACAACCAGCATATGCCAAAATTATACACTTCCCGAGGAAGCTGCCGATACTGTTATTATTTCGGAAATTTCGTTCTTGGATGTCATTTGTTTAATTTCGAGGATATGAAAGTTTTTTTTTCAAGTGGATGTGGAGATTGTTTGTTTCTAGAATGATAAMGGTAAATTGATTATAACAGTTTTTCCGAGTTAAATGATTTGTATTTTTTTCAGAAATTGATGTTATTTTCAGTTGAAGTCGAGTTGGTCAACCTTCAACCGATTGACGTAAAGGAATTATCCCAATAACAATTTGGATAACATGGAACTTCATCGAATGGTGTTTTGTACGTTGCAGAAACCGGGACTTTGTTGGGGAAAGTCAATATTTCCTTCTTCATTCCCAGTAACTATTGTTACAAAAATTGACTGAATCGTTTTCCGAATTTTTATTAATTATACGTTTCCTTAACCTCACTTCCCTTTTTGTTGTATTGTTTTTTTTTCGCCTTCTCCTAAATTCATTTTAGTTTTTTAAACAAATTTTTTTTTCAACTTTTCTTATTTGTATCTTGAATCTTTATTGTTTTTTCGTTATGTTACCGCATATCTTATCCTCTTTGTTTTACTGAGTTTCTCTAATTGATTCTTTATATCAATCGGTTTTATTCCTATATCTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>482 392 109 17</canonical_bands>
                <polymorphic_bands>482 392 126</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTGCCGATACTGTTATTATTT</pcr_primer_p1>
		<pcr_primer_p2>GTTATTGGGATAATTCCTTTACG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTGCCGATACTGTTATTATTTCGGAAATTTCGTTCTTGGATGTCATTTGTTTAATTTCGAGGATATGAAAGTTTTTTTTTCAAGTGGATGTGGAGATTGTTTGTTTCTAGAATGATAACGGTAAATTGATTATAACAGTTTTTCCGAGTTAAATGATTTGTATTTTTTTCAGAAATTGATGTTATTTTCAGTTGAAGTCGAGTTGGTCAACCTTCAACCGATTGACGTAAAGGAATTATCCCAATAAC</canonical_amplicon>
		<polymorphic_amplicon>GCTGCCGATACTGTTATTATTTCGGAAATTTCGTTCTTGGATGTCATTTGTTTAATTTCGAGGATATGAAAGTTTTTTTTTCAAGTGGATGTGGAGATTGTTTGTTTCTAGAATGATAAMGGTAAATTGATTATAACAGTTTTTCCGAGTTAAATGATTTGTATTTTTTTCAGAAATTGATGTTATTTTCAGTTGAAGTCGAGTTGGTCAACCTTCAACCGATTGACGTAAAGGAATTATCCCAATAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14455</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>165045</contig_pos>
        <strand></strand>
        <context>ATTCATTTTA[G/C]TTTTTTAAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TCCCTTTTTGTTGTATTGTTTTTTTTTCGCCTTCTCCTAAATTCATTTTA</left_flank>
        <right_flank>TTTTTTAAACAAATTTTTTTTTCAACTTTTCTTATTTGTATCTTGAATCT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATATGCCAAAATTATACACTTCCCGAGGAAGCTGCCGATACTGTTATTATTTCGGAAATTTCGTTCTTGGATGTCATTTGTTTAATTTCGAGGATATGAAAGTTTTTTTTTCAAGTGGATGTGGAGATTGTTTGTTTCTAGAATGATAACGGTAAATTGATTATAACAGTTTTTCCGAGTTAAATGATTTGTATTTTTTTCAGAAATTGATGTTATTTTCAGTTGAAGTCGAGTTGGTCAACCTTCAACCGATTGACGTAAAGGAATTATCCCAATAACAATTTGGATAACATGGAACTTCATCGAATGGTGTTTTGTACGTTGCAGAAACCGGGACTTTGTTGGGGAAAGTCAATATTTCCTTCTTCATTCCCAGTAACTATTGTTACAAAAATTGACTGAATCGTTTTCCGAATTTTTATTAATTATACGTTTCCTTAACCTCACTTCCCTTTTTGTTGTATTGTTTTTTTTTCGCCTTCTCCTAAATTCATTTTAGTTTTTTAAACAAATTTTTTTTTCAACTTTTCTTATTTGTATCTTGAATCTTTATTGTTTTTTCGTTATGTTACCGCATATCTTATCCTCTTTGTTTTACTGAGTTTCTCTAATTGATTCTTTATATCAATCGGTTTTATTCCTATATCTTATTTCCCATACATATTTTTCAACAAGTTCACTTCAATAAAAGTCATTTTTCTGTTTTTTTCGTACGCCTGTGTTCTCATATCAGTTTGTTCTGGTGTTGCTTCTACCGATTTTTGTTATTTCTCATTTTCAAAACAGGCTCATCTTAAAGGTGCTGTACGGTGAATTGTTCAAATTCTCGTTTTGTGCAGAAAATTATGTCGATTTATATAAAAATGGAAGAATTTTTTTCGATAGAAACTCGTTCATTTAGAAAAAAAAAACCCTCATCAAAAAATAATTTTTCAAACATGTTATATTTCAGAACAAGTATGAGTTTTCTAGTCCCCCACGGCCACTGCGGGTGCGCCA</canonical>
            <polymorphic>CATATGCCAAAATTATACACTTCCCGAGGAAGCTGCCGATACTGTTATTATTTCGGAAATTTCGTTCTTGGATGTCATTTGTTTAATTTCGAGGATATGAAAGTTTTTTTTTCAAGTGGATGTGGAGATTGTTTGTTTCTAGAATGATAACGGTAAATTGATTATAACAGTTTTTCCGAGTTAAATGATTTGTATTTTTTTCAGAAATTGATGTTATTTTCAGTTGAAGTCGAGTTGGTCAACCTTCAACCGATTGACGTAAAGGAATTATCCCAATAACAATTTGGATAACATGGAACTTCATCGAATGGTGTTTTGTACGTTGCAGAAACCGGGACTTTGTTGGGGAAAGTCAATATTTCCTTCTTCATTCCCAGTAACTATTGTTACAAAAATTGACTGAATCGTTTTCCGAATTTTTATTAATTATACGTTTCCTTAACCTCACTTCCCTTTTTGTTGTATTGTTTTTTTTTCGCCTTCTCCTAAATTCATTTTASTTTTTTAAACAAATTTTTTTTTCAACTTTTCTTATTTGTATCTTGAATCTTTATTGTTTTTTCGTTATGTTACCGCATATCTTATCCTCTTTGTTTTACTGAGTTTCTCTAATTGATTCTTTATATCAATCGGTTTTATTCCTATATCTTATTTCCCATACATATTTTTCAACAAGTTCACTTCAATAAAAGTCATTTTTCTGTTTTTTTCGTACGCCTGTGTTCTCATATCAGTTTGTTCTGGTGTTGCTTCTACCGATTTTTGTTATTTCTCATTTTCAAAACAGGCTCATCTTAAAGGTGCTGTACGGTGAATTGTTCAAATTCTCGTTTTGTGCAGAAAATTATGTCGATTTATATAAAAATGGAAGAATTTTTTTCGATAGAAACTCGTTCATTTAGAAAAAAAAAACCCTCATCAAAAAATAATTTTTCAAACATGTTATATTTCAGAACAAGTATGAGTTTTCTAGTCCCCCACGGCCACTGCGGGTGCGCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTCTTCATTCCCAGTAACTAT</pcr_primer_p1>
		<pcr_primer_p2>GAAACTCAGTAAAACAAAGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CCTTCTTCATTCCCAGTAACTATTGTTACAAAAATTGACTGAATCGTTTTCCGAATTTTTATTAATTATACGTTTCCTTAACCTCACTTCCCTTTTTGTTGTATTGTTTTTTTTTCGCCTTCTCCTAAATTCATTTTAGTTTTTTAAACAAATTTTTTTTTCAACTTTTCTTATTTGTATCTTGAATCTTTATTGTTTTTTCGTTATGTTACCGCATATCTTATCCTCTTTGTTTTACTGAGTTTC</canonical_amplicon>
		<polymorphic_amplicon>CCTTCTTCATTCCCAGTAACTATTGTTACAAAAATTGACTGAATCGTTTTCCGAATTTTTATTAATTATACGTTTCCTTAACCTCACTTCCCTTTTTGTTGTATTGTTTTTTTTTCGCCTTCTCCTAAATTCATTTTASTTTTTTAAACAAATTTTTTTTTCAACTTTTCTTATTTGTATCTTGAATCTTTATTGTTTTTTCGTTATGTTACCGCATATCTTATCCTCTTTGTTTTACTGAGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14457</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>168651</contig_pos>
        <strand>+</strand>
        <context>ATGGCTATTC[G/T]TTTCAGGAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATTGGTTCCGAATTCCTACCTGGTTGCGTTGGAAACGGGATGGCTATTC</left_flank>
        <right_flank>TTTCAGGAACAGTTGTCCTTCAAATTCTTTGGTTTCTTCAATGAGAGCTA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGCAGGAGAATTGAAGAACTGAGTTGGTGGTGGTCCGTCTTCCAGAATCTGGATTTCGAAAATTGTAAATATGAATAAATTATTAAAAATTGATAAGATGAAATCGGAGCTATAAAAGAGAAATGCAGAAATGCCGGTGACCGTCACAGAAGGTCTCGAACAACACTTTCTGAATTTATTCTGTAGTTTTTTCACTGGTTTTTGTCAAATTGTCTGTTATGTTTAATCTCTTCTACATCTCCGATTTTTTTCGTATCAGAATAATACCTGGCTACTGTAATTTGCAAAATCAGTCTCCCCAAATTGTTGACGAATGAATGATTTGGTCTCGTCGTTGGCACACTCATAAACAAACATTGGTCTGCAAAACACATCCACCCAAACTCCAGGACGAATGTCCCACCAGCGATAGTCTCGTCGGGGCATTTCTGAAAATGCTAATGTAGGTTATTGGTTCCGAATTCCTACCTGGTTGCGTTGGAAACGGGATGGCTATTCTTTTCAGGAACAGTTGTCCTTCAAATTCTTTGGTTTCTTCAATGAGAGCTACAGTATGATCGGTGCAATATACGAACATTCTGGAAGAACAAGAAAATGTGAATTAAATGAGCTCAACTCACTTGAAAATTCTTTTCATACGACAACCATGGAAATCGTTCATGTGATCTAGCCAACAACAACGATAGACCAACATTGGCGGTCTGTTTATGAATTCTCGTTGGTCTGGGAGCTTCGGGGCAGTTCGTGGAGCACCGCGACGTCCTACTAACCAAGGATCTTCAGGGAGTTCTTCATCTTCATTTACCTTGATTCCATGCTCTTCAAGAAAGTTCTGAAATCGAGATAATTGAGCTCAATATGAACGCATTGGGTGGGCTTCTATTAATGCGAGTACGGTGTTAGAACGTCAACTTTGAGATTTAATTTTCTCGATTCCTGTGAAAGATATAAGAAATTTGTCAGCTGATCTTGTTTATCATAATGTCACCAATATTTTAT</canonical>
            <polymorphic>TCGCAGGAGAATTGAAGAACTGAGTTGGTGGTGGTCCGTCTTCCAGAATCTGGATTTCGAAAATTGTAAATATGAATAAATTATTAAAAATTGATAAGATGAAATCGGAGCTATAAAAGAGAAATGCAGAAATGCCGGTGACCGTCACAGAAGGTCTCGAACAACACTTTCTGAATTTATTCTGTAGTTTTTTCACTGGTTTTTGTCAAATTGTCTGTTATGTTTAATCTCTTCTACATCTCCGATTTTTTTCGTATCAGAATAATACCTGGCTACTGTAATTTGCAAAATCAGTCTCCCCAAATTGTTGACGAATGAATGATTTGGTCTCGTCGTTGGCACACTCATAAACAAACATTGGTCTGCAAAACACATCCACCCAAACTCCAGGACGAATGTCCCACCAGCGATAGTCTCGTCGGGGCATTTCTGAAAATGCTAATGTAGGTTATTGGTTCCGAATTCCTACCTGGTTGCGTTGGAAACGGGATGGCTATTCKTTTCAGGAACAGTTGTCCTTCAAATTCTTTGGTTTCTTCAATGAGAGCTACAGTATGATCGGTGCAATATACGAACATTCTGGAAGAACAAGAAAATGTGAATTAAATGAGCTCAACTCACTTGAAAATTCTTTTCATACGACAACCATGGAAATCGTTCATGTGATCTAGCCAACAACAACGATAGACCAACATTGGCGGTCTGTTTATGAATTCTCGTTGGTCTGGGAGCTTCGGGGCAGTTCGTGGAGCACCGCGACGTCCTACTAACCAAGGATCTTCAGGGAGTTCTTCATCTTCATTTACCTTGATTCCATGCTCTTCAAGAAAGTTCTGAAATCGAGATAATTGAGCTCAATATGAACGCATTGGGTGGGCTTCTATTAATGCGAGTACGGTGTTAGAACGTCAACTTTGAGATTTAATTTTCTCGATTCCTGTGAAAGATATAAGAAATTTGTCAGCTGATCTTGTTTATCATAATGTCACCAATATTTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACTCATAAACAAACATTGGTC</pcr_primer_p1>
		<pcr_primer_p2>TGTTCTTCCAGAATGTTCGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACACTCATAAACAAACATTGGTCTGCAAAACACATCCACCCAAACTCCAGGACGAATGTCCCACCAGCGATAGTCTCGTCGGGGCATTTCTGAAAATGCTAATGTAGGTTATTGGTTCCGAATTCCTACCTGGTTGCGTTGGAAACGGGATGGCTATTCTTTTCAGGAACAGTTGTCCTTCAAATTCTTTGGTTTCTTCAATGAGAGCTACAGTATGATCGGTGCAATATACGAACATTCTGGAAGAACA</canonical_amplicon>
		<polymorphic_amplicon>ACACTCATAAACAAACATTGGTCTGCAAAACACATCCACCCAAACTCCAGGACGAATGTCCCACCAGCGATAGTCTCGTCGGGGCATTTCTGAAAATGCTAATGTAGGTTATTGGTTCCGAATTCCTACCTGGTTGCGTTGGAAACGGGATGGCTATTCKTTTCAGGAACAGTTGTCCTTCAAATTCTTTGGTTTCTTCAATGAGAGCTACAGTATGATCGGTGCAATATACGAACATTCTGGAAGAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14458</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>170181</contig_pos>
        <strand>+</strand>
        <context>AAGTTCTATT[A/G]AAAATGAAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAAGAGAAAATGTGAGTAGCAAGGAAAAAAGTAAATGAGAAGTTCTATT</left_flank>
        <right_flank>AAAATGAAACTGAGGTTTATTCATTTTTGCATAAAAATTGTTGGAAACCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAACTCACTTGCAAGAATGATGAAAGCTCCGTTGTTTTGGATAATTCTGAACCAAATCTTCTTCAGCTACAAAGCACTCTCCATTTTTGTACTTCAGCTGGTGACGTCTTCTCGGTGCCGGATCACTACCAAACTGTTCTAGAATATCTTCGGTAGGAATGTCTTGAGCCGGGTCTTCGTAGCTCCTAAACGACGACATGAGTGGTATGAATGTTGCAATACTTGTGTCGTTGTTGCATTTAAACGTCGGAAACGACACGACAATTTTGTTGTTCATGGTAGCGAAAGGCGAAAAAGCGGCGAAGAGTGAATAAACGGCTTCCGGCGGTATAGATTTCCTCTCTTCTCGTCTTCCAGTTCTGGCTTGTATTCGTTGCTATTTTAAATACCAAAGAATATAAACAAAAAAGGGGAAAGTAATACTTTTAGAAGGAAGGTAACATTTTCAAGAGAAAATGTGAGTAGCAAGGAAAAAAGTAAATGAGAAGTTCTATTGAAAATGAAACTGAGGTTTATTCATTTTTGCATAAAAATTGTTGGAAACCAATCAAAATGTTTTATTACATCAAGATTTGTAGGTAACCATGCATATTAACGAAGCAACAAACAAAACACTGAAACAACAACTCGAAACTTCAAAAAATCACTTCAAGGAAGGTATATTTTAATTCATGCCTATTTCTGAATCCTTCTATTCGTTATTTTCAGAGTGTTTTTCGAGGGTTTTCAATTTTCTTTTGAATTTCCTCTATGTATGGTTACGTGTTTTTGACATGAACAATCGTGAACATGTTGACATTATCAAAAACATTTTAATAGTTGACAAAATTTTTATATTATTTGGAAGAAATTAGACAATTGAGCTGAATATGCAAGTTTAGTGGCGTCGGCTTCTTCTGATAATTTTCAATTGAAATAGTACATCGGATATGATAGAACTCGACGAGTACTAAAAAAATATTATGCGGAATATTGTATCTTGTCTGCGAACAAAGT</canonical>
            <polymorphic>AAAAAAACTCACTTGCAAGAATGATGAAAGCTCCGTTGTTTTGGATAATTCTGAACCAAATCTTCTTCAGCTACAAAGCACTCTCCATTTTTGTACTTCAGCTGGTGACGTCTTCTCGGTGCCGGATCACTACCAAACTGTTCTAGAATATCTTCGGTAGGAATGTCTTGAGCCGGGTCTTCGTAGCTCCTAAACGACGACATGAGTGGTATGAATGTTGCAATACTTGTGTCGTTGTTGCATTTAAACGTCGGAAACGACACGACAATTTTGTTGTTCATGGTAGCGAAAGGCGAAAAAGCGGCGAAGAGTGAATAAACGGCTTCCGGCGGTATAGATTTCCTCTCTTCTCGTCTTCCAGTTCTGGCTTGTATTCGTTGCTATTTTAAATACCAAAGAATATAAACAAAAAAGGGGAAAGTAATACTTTTAGAAGGAAGGTAACATTTTCAAGAGAAAATGTGAGTAGCAAGGAAAAAAGTAAATGAGAAGTTCTATTRAAAATGAAACTGAGGTTTATTCATTTTTGCATAAAAATTGTTGGAAACCAATCAAAATGTTTTATTACATCAAGATTTGTAGGTAACCATGCATATTAACGAAGCAACAAACAAAACACTGAAACAACAACTCGAAACTTCAAAAAATCACTTCAAGGAAGGTATATTTTAATTCATGCCTATTTCTGAATCCTTCTATTCGTTATTTTCAGAGTGTTTTTCGAGGGTTTTCAATTTTCTTTTGAATTTCCTCTATGTATGGTTACGTGTTTTTGACATGAACAATCGTGAACATGTTGACATTATCAAAAACATTTTAATAGTTGACAAAATTTTTATATTATTTGGAAGAAATTAGACAATTGAGCTGAATATGCAAGTTTAGTGGCGTCGGCTTCTTCTGATAATTTTCAATTGAAATAGTACATCGGATATGATAGAACTCGACGAGTACTAAAAAAATATTATGCGGAATATTGTATCTTGTCTGCGAACAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAGAGAAAATGTGAGTAGC</pcr_primer_p1>
		<pcr_primer_p2>GATTCAGAAATAGGCATGAATTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAGAGAAAATGTGAGTAGCAAGGAAAAAAGTAAATGAGAAGTTCTATTGAAAATGAAACTGAGGTTTATTCATTTTTGCATAAAAATTGTTGGAAACCAATCAAAATGTTTTATTACATCAAGATTTGTAGGTAACCATGCATATTAACGAAGCAACAAACAAAACACTGAAACAACAACTCGAAACTTCAAAAAATCACTTCAAGGAAGGTATATTTTAATTCATGCCTATTTCTGAATC</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAGAGAAAATGTGAGTAGCAAGGAAAAAAGTAAATGAGAAGTTCTATTRAAAATGAAACTGAGGTTTATTCATTTTTGCATAAAAATTGTTGGAAACCAATCAAAATGTTTTATTACATCAAGATTTGTAGGTAACCATGCATATTAACGAAGCAACAAACAAAACACTGAAACAACAACTCGAAACTTCAAAAAATCACTTCAAGGAAGGTATATTTTAATTCATGCCTATTTCTGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14459</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>170013</contig_pos>
        <strand></strand>
        <context>GCTTCCGGCG[G/A]TATAGATTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGTAGCGAAAGGCGAAAAAGCGGCGAAGAGTGAATAAACGGCTTCCGGCG</left_flank>
        <right_flank>TATAGATTTCCTCTCTTCTCGTCTTCCAGTTCTGGCTTGTATTCGTTGCT</right_flank>
        <qual_score>35</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTAAATGATAATTGATTTTGAAAATTCGAATACGATGAATCTCTTCATCAATCCCGTCTTCTTCTGCGTATGCATCAAAAGATAATACTGCAGAATTTGCTGCTTCCGCTTCATGAAGTAGTGGTCCAGCGCTGAAACAAATTCCTGAACTTTTCCTAAACTCAAAAAAAAACTCACTTGCAAGAATGATGAAAGCTCCGTTGTTTTGGATAATTCTGAACCAAATCTTCTTCAGCTACAAAGCACTCTCCATTTTTGTACTTCAGCTGGTGACGTCTTCTCGGTGCCGGATCACTACCAAACTGTTCTAGAATATCTTCGGTAGGAATGTCTTGAGCCGGGTCTTCGTAGCTCCTAAACGACGACATGAGTGGTATGAATGTTGCAATACTTGTGTCGTTGTTGCATTTAAACGTCGGAAACGACACGACAATTTTGTTGTTCATGGTAGCGAAAGGCGAAAAAGCGGCGAAGAGTGAATAAACGGCTTCCGGCGGTATAGATTTCCTCTCTTCTCGTCTTCCAGTTCTGGCTTGTATTCGTTGCTATTTTAAATACCAAAGAATATAAACAAAAAAGGGGAAAGTAATACTTTTAGAAGGAAGGTAACATTTTCAAGAGAAAATGTGAGTAGCAAGGAAAAAAGTAAATGAGAAGTTCTATTGAAAATGAAACTGAGGTTTATTCATTTTTGCATAAAAATTGTTGGAAACCAATCAAAATGTTTTATTACATCAAGATTTGTAGGTAACCATGCATATTAACGAAGCAACAAACAAAACACTGAAACAACAACTCGAAACTTCAAAAAATCACTTCAAGGAAGGTATATTTTAATTCATGCCTATTTCTGAATCCTTCTATTCGTTATTTTCAGAGTGTTTTTCGAGGGTTTTCAATTTTCTTTTGAATTTCCTCTATGTATGGTTACGTGTTTTTGACATGAACAATCGTGAACATGTTGACATTATCAAAAACATTTTAATAGTTGACAAAA</canonical>
            <polymorphic>CATTTAAATGATAATTGATTTTGAAAATTCGAATACGATGAATCTCTTCATCAATCCCGTCTTCTTCTGCGTATGCATCAAAAGATAATACTGCAGAATTTGCTGCTTCCGCTTCATGAAGTAGTGGTCCAGCGCTGAAACAAATTCCTGAACTTTTCCTAAACTCAAAAAAAAACTCACTTGCAAGAATGATGAAAGCTCCGTTGTTTTGGATAATTCTGAACCAAATCTTCTTCAGCTACAAAGCACTCTCCATTTTTGTACTTCAGCTGGTGACGTCTTCTCGGTGCCGGATCACTACCAAACTGTTCTAGAATATCTTCGGTAGGAATGTCTTGAGCCGGGTCTTCGTAGCTCCTAAACGACGACATGAGTGGTATGAATGTTGCAATACTTGTGTCGTTGTTGCATTTAAACGTCGGAAACGACACGACAATTTTGTTGTTCATGGTAGCGAAAGGCGAAAAAGCGGCGAAGAGTGAATAAACGGCTTCCGGCGRTATAGATTTCCTCTCTTCTCGTCTTCCAGTTCTGGCTTGTATTCGTTGCTATTTTAAATACCAAAGAATATAAACAAAAAAGGGGAAAGTAATACTTTTAGAAGGAAGGTAACATTTTCAAGAGAAAATGTGAGTAGCAAGGAAAAAAGTAAATGAGAAGTTCTATTGAAAATGAAACTGAGGTTTATTCATTTTTGCATAAAAATTGTTGGAAACCAATCAAAATGTTTTATTACATCAAGATTTGTAGGTAACCATGCATATTAACGAAGCAACAAACAAAACACTGAAACAACAACTCGAAACTTCAAAAAATCACTTCAAGGAAGGTATATTTTAATTCATGCCTATTTCTGAATCCTTCTATTCGTTATTTTCAGAGTGTTTTTCGAGGGTTTTCAATTTTCTTTTGAATTTCCTCTATGTATGGTTACGTGTTTTTGACATGAACAATCGTGAACATGTTGACATTATCAAAAACATTTTAATAGTTGACAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>504 387 109</canonical_bands>
                <polymorphic_bands>891 109</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATGAATGTTGCAATACTTGTG</pcr_primer_p1>
		<pcr_primer_p2>TTGAAAATGTTACCTTCCTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GTATGAATGTTGCAATACTTGTGTCGTTGTTGCATTTAAACGTCGGAAACGACACGACAATTTTGTTGTTCATGGTAGCGAAAGGCGAAAAAGCGGCGAAGAGTGAATAAACGGCTTCCGGCGGTATAGATTTCCTCTCTTCTCGTCTTCCAGTTCTGGCTTGTATTCGTTGCTATTTTAAATACCAAAGAATATAAACAAAAAAGGGGAAAGTAATACTTTTAGAAGGAAGGTAACATTTTCAA</canonical_amplicon>
		<polymorphic_amplicon>GTATGAATGTTGCAATACTTGTGTCGTTGTTGCATTTAAACGTCGGAAACGACACGACAATTTTGTTGTTCATGGTAGCGAAAGGCGAAAAAGCGGCGAAGAGTGAATAAACGGCTTCCGGCGRTATAGATTTCCTCTCTTCTCGTCTTCCAGTTCTGGCTTGTATTCGTTGCTATTTTAAATACCAAAGAATATAAACAAAAAAGGGGAAAGTAATACTTTTAGAAGGAAGGTAACATTTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14460</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>180340</contig_pos>
        <strand>+</strand>
        <context>TTTTTTGTTC[A/T]TTGCTTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTACAGTAATCGTTTTGGGCCCCCGGAAATTGATTGGGTTTTTTGTTC</left_flank>
        <right_flank>TTGCTTTTTTTGTTGGGTAGAATAGAAATATTCCGATAATGATGCTACCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCTTTTCCTCACCATCATTACTATATATTATCATAAACTATGTACTAGTAAGATATATAGCTTTTCAGTTCTCTATATCTGCCAAAAGTGTCGACCTGTTCCTTCTTCCTCTCTCTTTATTTATTGTATATTCTTACTTTTATTGTCCACCTTCCGACAAAACCGACCATAGATATTTTTGAACGCTTTTTAAACTAGTTCATTTCTTTTCAGGAAAAAAGGAAAAAAGAAAAAATAATAGAACAAACAAATTTGATGTAATCCTCACAGGAAATTAGAACATGCTGCAAGATTTGAAACGTTTTTCTCTTTTTTCCTCCAATTTCCCCGGAAGGATAATGTTGCCTCATTCGTTTTGCGTCATTTGCTGCTGTTTAGAAGCAATGTGACTTTTGGTTGGAACTGTTGTATAGTTAGGGAATTCGAGAATCGCTTTAGATTAGTTTCAATTACAGTAATCGTTTTGGGCCCCCGGAAATTGATTGGGTTTTTTGTTCATTGCTTTTTTTGTTGGGTAGAATAGAAATATTCCGATAATGATGCTACCGGCCAAAATAAATCATAGTTTGATTTTTTCAGTGAAAACTAGTCAACTTTGTGCTCTGAAAACTTCAAAATAGATATAAACTTCATTTTTGTAGTCGACAACTTTTCTGTCAAATTCTATTGCTGTGAGATATGCTGTTTGAAACCAAAAAAAAAAATGCTGGAAATTACAATATGAGAATTGTGCATTTTTAAAAACGGTTATTTCGCTTTTTTGAATTTTCACAACAAAAATATATGAATTACAAAAATCGAGCTTTCGTTTTGTTCAGTATAAATTTGTAGAAAATTTGAAAAATATATGTCATGATATCACCAATGTTTTAGCAGTTGATAAATTTTTAATATCACTCATAGAAACCAAGATAATAGCGCTCAAAGTTAGCAGTTTAAGCTGGTTTCTATTAGAGGAAATACGGTTACCTTCTCCGATACTGTAGTTGAAAAGTTGA</canonical>
            <polymorphic>ACTCTTTTCCTCACCATCATTACTATATATTATCATAAACTATGTACTAGTAAGATATATAGCTTTTCAGTTCTCTATATCTGCCAAAAGTGTCGACCTGTTCCTTCTTCCTCTCTCTTTATTTATTGTATATTCTTACTTTTATTGTCCACCTTCCGACAAAACCGACCATAGATATTTTTGAACGCTTTTTAAACTAGTTCATTTCTTTTCAGGAAAAAAGGAAAAAAGAAAAAATAATAGAACAAACAAATTTGATGTAATCCTCACAGGAAATTAGAACATGCTGCAAGATTTGAAACGTTTTTCTCTTTTTTCCTCCAATTTCCCCGGAAGGATAATGTTGCCTCATTCGTTTTGCGTCATTTGCTGCTGTTTAGAAGCAATGTGACTTTTGGTTGGAACTGTTGTATAGTTAGGGAATTCGAGAATCGCTTTAGATTAGTTTCAATTACAGTAATCGTTTTGGGCCCCCGGAAATTGATTGGGTTTTTTGTTCWTTGCTTTTTTTGTTGGGTAGAATAGAAATATTCCGATAATGATGCTACCGGCCAAAATAAATCATAGTTTGATTTTTTCAGTGAAAACTAGTCAACTTTGTGCTCTGAAAACTTCAAAATAGATATAAACTTCATTTTTGTAGTCGACAACTTTTCTGTCAAATTCTATTGCTGTGAGATATGCTGTTTGAAACCAAAAAAAAAAATGCTGGAAATTACAATATGAGAATTGTGCATTTTTAAAAACGGTTATTTCGCTTTTTTGAATTTTCACAACAAAAATATATGAATTACAAAAATCGAGCTTTCGTTTTGTTCAGTATAAATTTGTAGAAAATTTGAAAAATATATGTCATGATATCACCAATGTTTTAGCAGTTGATAAATTTTTAATATCACTCATAGAAACCAAGATAATAGCGCTCAAAGTTAGCAGTTTAAGCTGGTTTCTATTAGAGGAAATACGGTTACCTTCTCCGATACTGTAGTTGAAAAGTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCATTTGCTGCTGTTTAGAA</pcr_primer_p1>
		<pcr_primer_p2>GCACAAAGTTGACTAGTTTTCAC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTCATTTGCTGCTGTTTAGAAGCAATGTGACTTTTGGTTGGAACTGTTGTATAGTTAGGGAATTCGAGAATCGCTTTAGATTAGTTTCAATTACAGTAATCGTTTTGGGCCCCCGGAAATTGATTGGGTTTTTTGTTCATTGCTTTTTTTGTTGGGTAGAATAGAAATATTCCGATAATGATGCTACCGGCCAAAATAAATCATAGTTTGATTTTTTCAGTGAAAACTAGTCAACTTTGTGC</canonical_amplicon>
		<polymorphic_amplicon>GTCATTTGCTGCTGTTTAGAAGCAATGTGACTTTTGGTTGGAACTGTTGTATAGTTAGGGAATTCGAGAATCGCTTTAGATTAGTTTCAATTACAGTAATCGTTTTGGGCCCCCGGAAATTGATTGGGTTTTTTGTTCWTTGCTTTTTTTGTTGGGTAGAATAGAAATATTCCGATAATGATGCTACCGGCCAAAATAAATCATAGTTTGATTTTTTCAGTGAAAACTAGTCAACTTTGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14461</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>208572</contig_pos>
        <strand>+</strand>
        <context>GTAAAGATGG[A/G]ATTGTGCGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGACGAAAAGATGGGAAACCGAAAATTTATGAGAAACGGTAAAGATGG</left_flank>
        <right_flank>ATTGTGCGACGAGATGAAAAAAGTAAATTCAAAAATTTGAATATTATTCC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTTTGAATGCTTCGACATCCTCAGCACTGATTGGATCCTCGACCAGTGGAGGCAACGGTACTTCGCGGTTCAGTGGTGGAAAAGGATTATCCATTTCTTGACAACTTCTGCAATTTGTACTAGTTTTTAGGGAAAAAAATCAAGAGAGAATATGGACATGACGGGAGAGCGACAGCTCAATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATATATCATTCAATTAGAAAATTACCACGGTAGACGTATGGCTGACAGCCGTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTACCGCTATAAAAATTTTATGGCTCGTTGTATGCAAATGGAATAAAGACTGTGTGGGCTTCTTCTAGGGTGGGAGACCGAACGATGAGATGAAACAAAACCGAAATCTTACCATATAGTCTTTTTTGACGAAAAGATGGGAAACCGAAAATTTATGAGAAACGGTAAAGATGGGATTGTGCGACGAGATGAAAAAAGTAAATTCAAAAATTTGAATATTATTCCCAGTAAAAAATAAAAAAATAAGAACAGTGTAGAAGCAATGGGAACTGTTACCGTAATGCATTGTTTCTAGAAAATTGGGATGAGTCACTGGATCTACAGAAACCCTCAAACGGTTTTCTAAATTAATAGTTTCTCTAATACTTATCAAAAAGCTACGTAACCTAAAATTTTTCAATCTTCAATAGTTTTTTAGCAGCTCAACATAACGGAAATCATTTTGTTACTGGAAAAAGTAAATAGAAAATCGAGAAGTACAGTAATCTTTAAGTTTTATTCCAGCTTTTTCAGCTGTCCGATTATATTAGGGAAATTTTTCATAATTTCGAAATTTTTGAAAAAAGTTGATCGGATTAAACTATGGTATCGCAAATCAACAGTCAGAAACTCAAATGATCTAAAACCACAAATTTTCAACTATTTGGGAAACTGAATGCTTTTTAAATTGAGAAA</canonical>
            <polymorphic>CATTTTTGAATGCTTCGACATCCTCAGCACTGATTGGATCCTCGACCAGTGGAGGCAACGGTACTTCGCGGTTCAGTGGTGGAAAAGGATTATCCATTTCTTGACAACTTCTGCAATTTGTACTAGTTTTTAGGGAAAAAAATCAAGAGAGAATATGGACATGACGGGAGAGCGACAGCTCAATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATATATCATTCAATTAGAAAATTACCACGGTAGACGTATGGCTGACAGCCGTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTACCGCTATAAAAATTTTATGGCTCGTTGTATGCAAATGGAATAAAGACTGTGTGGGCTTCTTCTAGGGTGGGAGACCGAACGATGAGATGAAACAAAACCGAAATCTTACCATATAGTCTTTTTTGACGAAAAGATGGGAAACCGAAAATTTATGAGAAACGGTAAAGATGGRATTGTGCGACGAGATGAAAAAAGTAAATTCAAAAATTTGAATATTATTCCCAGTAAAAAATAAAAAAATAAGAACAGTGTAGAAGCAATGGGAACTGTTACCGTAATGCATTGTTTCTAGAAAATTGGGATGAGTCACTGGATCTACAGAAACCCTCAAACGGTTTTCTAAATTAATAGTTTCTCTAATACTTATCAAAAAGCTACGTAACCTAAAATTTTTCAATCTTCAATAGTTTTTTAGCAGCTCAACATAACGGAAATCATTTTGTTACTGGAAAAAGTAAATAGAAAATCGAGAAGTACAGTAATCTTTAAGTTTTATTCCAGCTTTTTCAGCTGTCCGATTATATTAGGGAAATTTTTCATAATTTCGAAATTTTTGAAAAAAGTTGATCGGATTAAACTATGGTATCGCAAATCAACAGTCAGAAACTCAAATGATCTAAAACCACAAATTTTCAACTATTTGGGAAACTGAATGCTTTTTAAATTGAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACGATGAGATGAAACAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTCTGTAGATCCAGTGACTCAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAACGATGAGATGAAACAAAACCGAAATCTTACCATATAGTCTTTTTTGACGAAAAGATGGGAAACCGAAAATTTATGAGAAACGGTAAAGATGGGATTGTGCGACGAGATGAAAAAAGTAAATTCAAAAATTTGAATATTATTCCCAGTAAAAAATAAAAAAATAAGAACAGTGTAGAAGCAATGGGAACTGTTACCGTAATGCATTGTTTCTAGAAAATTGGGATGAGTCACTGGATCTACAGAAA</canonical_amplicon>
		<polymorphic_amplicon>GAACGATGAGATGAAACAAAACCGAAATCTTACCATATAGTCTTTTTTGACGAAAAGATGGGAAACCGAAAATTTATGAGAAACGGTAAAGATGGRATTGTGCGACGAGATGAAAAAAGTAAATTCAAAAATTTGAATATTATTCCCAGTAAAAAATAAAAAAATAAGAACAGTGTAGAAGCAATGGGAACTGTTACCGTAATGCATTGTTTCTAGAAAATTGGGATGAGTCACTGGATCTACAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14462</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>208441</contig_pos>
        <strand>+</strand>
        <context>GCAAATGGAA[G/T]AAAGACTGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGGAACAGTACCGCTATAAAAATTTTATGGCTCGTTGTATGCAAATGGAA</left_flank>
        <right_flank>AAAGACTGTGTGGGCTTCTTCTAGGGTGGGAGACCGAACGATGAGATGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGAACATTGACAAATATTGATCTGGAGACCCGAGCATTCAAATGTTGGGCAAGGATGAGAGCACTAAAAATGCATTTAAATATTATAGATTAAACGTAGAGATTTCTACTTGCCGCGTTTTATGATTGCCATTTTTGAATGCTTCGACATCCTCAGCACTGATTGGATCCTCGACCAGTGGAGGCAACGGTACTTCGCGGTTCAGTGGTGGAAAAGGATTATCCATTTCTTGACAACTTCTGCAATTTGTACTAGTTTTTAGGGAAAAAAATCAAGAGAGAATATGGACATGACGGGAGAGCGACAGCTCAATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATATATCATTCAATTAGAAAATTACCACGGTAGACGTATGGCTGACAGCCGTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTACCGCTATAAAAATTTTATGGCTCGTTGTATGCAAATGGAATAAAGACTGTGTGGGCTTCTTCTAGGGTGGGAGACCGAACGATGAGATGAAACAAAACCGAAATCTTACCATATAGTCTTTTTTGACGAAAAGATGGGAAACCGAAAATTTATGAGAAACGGTAAAGATGGGATTGTGCGACGAGATGAAAAAAGTAAATTCAAAAATTTGAATATTATTCCCAGTAAAAAATAAAAAAATAAGAACAGTGTAGAAGCAATGGGAACTGTTACCGTAATGCATTGTTTCTAGAAAATTGGGATGAGTCACTGGATCTACAGAAACCCTCAAACGGTTTTCTAAATTAATAGTTTCTCTAATACTTATCAAAAAGCTACGTAACCTAAAATTTTTCAATCTTCAATAGTTTTTTAGCAGCTCAACATAACGGAAATCATTTTGTTACTGGAAAAAGTAAATAGAAAATCGAGAAGTACAGTAATCTTTAAGTTTTATTCCAGCTTTTTCAGCTGTCCGATTATATTAGGGAAATTTTTCATA</canonical>
            <polymorphic>ATGGAACATTGACAAATATTGATCTGGAGACCCGAGCATTCAAATGTTGGGCAAGGATGAGAGCACTAAAAATGCATTTAAATATTATAGATTAAACGTAGAGATTTCTACTTGCCGCGTTTTATGATTGCCATTTTTGAATGCTTCGACATCCTCAGCACTGATTGGATCCTCGACCAGTGGAGGCAACGGTACTTCGCGGTTCAGTGGTGGAAAAGGATTATCCATTTCTTGACAACTTCTGCAATTTGTACTAGTTTTTAGGGAAAAAAATCAAGAGAGAATATGGACATGACGGGAGAGCGACAGCTCAATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATATATCATTCAATTAGAAAATTACCACGGTAGACGTATGGCTGACAGCCGTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTACCGCTATAAAAATTTTATGGCTCGTTGTATGCAAATGGAAKAAAGACTGTGTGGGCTTCTTCTAGGGTGGGAGACCGAACGATGAGATGAAACAAAACCGAAATCTTACCATATAGTCTTTTTTGACGAAAAGATGGGAAACCGAAAATTTATGAGAAACGGTAAAGATGGGATTGTGCGACGAGATGAAAAAAGTAAATTCAAAAATTTGAATATTATTCCCAGTAAAAAATAAAAAAATAAGAACAGTGTAGAAGCAATGGGAACTGTTACCGTAATGCATTGTTTCTAGAAAATTGGGATGAGTCACTGGATCTACAGAAACCCTCAAACGGTTTTCTAAATTAATAGTTTCTCTAATACTTATCAAAAAGCTACGTAACCTAAAATTTTTCAATCTTCAATAGTTTTTTAGCAGCTCAACATAACGGAAATCATTTTGTTACTGGAAAAAGTAAATAGAAAATCGAGAAGTACAGTAATCTTTAAGTTTTATTCCAGCTTTTTCAGCTGTCCGATTATATTAGGGAAATTTTTCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTACCACGGTAGACGTATG</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCATAAATTTTCGGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAATTACCACGGTAGACGTATGGCTGACAGCCGTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTACCGCTATAAAAATTTTATGGCTCGTTGTATGCAAATGGAATAAAGACTGTGTGGGCTTCTTCTAGGGTGGGAGACCGAACGATGAGATGAAACAAAACCGAAATCTTACCATATAGTCTTTTTTGACGAAAAGATGGGAAACCGAAAATTTATGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>AAATTACCACGGTAGACGTATGGCTGACAGCCGTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTACCGCTATAAAAATTTTATGGCTCGTTGTATGCAAATGGAAKAAAGACTGTGTGGGCTTCTTCTAGGGTGGGAGACCGAACGATGAGATGAAACAAAACCGAAATCTTACCATATAGTCTTTTTTGACGAAAAGATGGGAAACCGAAAATTTATGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14463</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>208406</contig_pos>
        <strand>+</strand>
        <context>CAGTACCGCT[A/G]TAAAAATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTACCGCT</left_flank>
        <right_flank>TAAAAATTTTATGGCTCGTTGTATGCAAATGGAATAAAGACTGTGTGGGC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGCAATGGCTCCGCACCGTAACGAGCAACTTCCCATGGAACATTGACAAATATTGATCTGGAGACCCGAGCATTCAAATGTTGGGCAAGGATGAGAGCACTAAAAATGCATTTAAATATTATAGATTAAACGTAGAGATTTCTACTTGCCGCGTTTTATGATTGCCATTTTTGAATGCTTCGACATCCTCAGCACTGATTGGATCCTCGACCAGTGGAGGCAACGGTACTTCGCGGTTCAGTGGTGGAAAAGGATTATCCATTTCTTGACAACTTCTGCAATTTGTACTAGTTTTTAGGGAAAAAAATCAAGAGAGAATATGGACATGACGGGAGAGCGACAGCTCAATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATATATCATTCAATTAGAAAATTACCACGGTAGACGTATGGCTGACAGCCGTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTACCGCTATAAAAATTTTATGGCTCGTTGTATGCAAATGGAATAAAGACTGTGTGGGCTTCTTCTAGGGTGGGAGACCGAACGATGAGATGAAACAAAACCGAAATCTTACCATATAGTCTTTTTTGACGAAAAGATGGGAAACCGAAAATTTATGAGAAACGGTAAAGATGGGATTGTGCGACGAGATGAAAAAAGTAAATTCAAAAATTTGAATATTATTCCCAGTAAAAAATAAAAAAATAAGAACAGTGTAGAAGCAATGGGAACTGTTACCGTAATGCATTGTTTCTAGAAAATTGGGATGAGTCACTGGATCTACAGAAACCCTCAAACGGTTTTCTAAATTAATAGTTTCTCTAATACTTATCAAAAAGCTACGTAACCTAAAATTTTTCAATCTTCAATAGTTTTTTAGCAGCTCAACATAACGGAAATCATTTTGTTACTGGAAAAAGTAAATAGAAAATCGAGAAGTACAGTAATCTTTAAGTTTTATTCCAGCTTTT</canonical>
            <polymorphic>AGGCAATGGCTCCGCACCGTAACGAGCAACTTCCCATGGAACATTGACAAATATTGATCTGGAGACCCGAGCATTCAAATGTTGGGCAAGGATGAGAGCACTAAAAATGCATTTAAATATTATAGATTAAACGTAGAGATTTCTACTTGCCGCGTTTTATGATTGCCATTTTTGAATGCTTCGACATCCTCAGCACTGATTGGATCCTCGACCAGTGGAGGCAACGGTACTTCGCGGTTCAGTGGTGGAAAAGGATTATCCATTTCTTGACAACTTCTGCAATTTGTACTAGTTTTTAGGGAAAAAAATCAAGAGAGAATATGGACATGACGGGAGAGCGACAGCTCAATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATATATCATTCAATTAGAAAATTACCACGGTAGACGTATGGCTGACAGCCGTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTACCGCTRTAAAAATTTTATGGCTCGTTGTATGCAAATGGAATAAAGACTGTGTGGGCTTCTTCTAGGGTGGGAGACCGAACGATGAGATGAAACAAAACCGAAATCTTACCATATAGTCTTTTTTGACGAAAAGATGGGAAACCGAAAATTTATGAGAAACGGTAAAGATGGGATTGTGCGACGAGATGAAAAAAGTAAATTCAAAAATTTGAATATTATTCCCAGTAAAAAATAAAAAAATAAGAACAGTGTAGAAGCAATGGGAACTGTTACCGTAATGCATTGTTTCTAGAAAATTGGGATGAGTCACTGGATCTACAGAAACCCTCAAACGGTTTTCTAAATTAATAGTTTCTCTAATACTTATCAAAAAGCTACGTAACCTAAAATTTTTCAATCTTCAATAGTTTTTTAGCAGCTCAACATAACGGAAATCATTTTGTTACTGGAAAAAGTAAATAGAAAATCGAGAAGTACAGTAATCTTTAAGTTTTATTCCAGCTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTACCACGGTAGACGTATG</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCATAAATTTTCGGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAATTACCACGGTAGACGTATGGCTGACAGCCGTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTACCGCTATAAAAATTTTATGGCTCGTTGTATGCAAATGGAATAAAGACTGTGTGGGCTTCTTCTAGGGTGGGAGACCGAACGATGAGATGAAACAAAACCGAAATCTTACCATATAGTCTTTTTTGACGAAAAGATGGGAAACCGAAAATTTATGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>AAATTACCACGGTAGACGTATGGCTGACAGCCGTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTACCGCTRTAAAAATTTTATGGCTCGTTGTATGCAAATGGAATAAAGACTGTGTGGGCTTCTTCTAGGGTGGGAGACCGAACGATGAGATGAAACAAAACCGAAATCTTACCATATAGTCTTTTTTGACGAAAAGATGGGAAACCGAAAATTTATGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14464</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>208339</contig_pos>
        <strand>+</strand>
        <context>GCTGACAGCY[C/G]TCTGTTTAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATATATCATTCAATTAGAAAATTACCACGGTAGACGTATGGCTGACAGCC</left_flank>
        <right_flank>TCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATCAGTTTCTGGAACTGGGTGACCTTTGTTTTGAATCAGAAAATCATGGATCCAGTTAGCCAAACAAGGCAATGGCTCCGCACCGTAACGAGCAACTTCCCATGGAACATTGACAAATATTGATCTGGAGACCCGAGCATTCAAATGTTGGGCAAGGATGAGAGCACTAAAAATGCATTTAAATATTATAGATTAAACGTAGAGATTTCTACTTGCCGCGTTTTATGATTGCCATTTTTGAATGCTTCGACATCCTCAGCACTGATTGGATCCTCGACCAGTGGAGGCAACGGTACTTCGCGGTTCAGTGGTGGAAAAGGATTATCCATTTCTTGACAACTTCTGCAATTTGTACTAGTTTTTAGGGAAAAAAATCAAGAGAGAATATGGACATGACGGGAGAGCGACAGCTCAATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATATATCATTCAATTAGAAAATTACCACGGTAGACGTATGGCTGACAGCCGTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTACCGCTATAAAAATTTTATGGCTCGTTGTATGCAAATGGAATAAAGACTGTGTGGGCTTCTTCTAGGGTGGGAGACCGAACGATGAGATGAAACAAAACCGAAATCTTACCATATAGTCTTTTTTGACGAAAAGATGGGAAACCGAAAATTTATGAGAAACGGTAAAGATGGGATTGTGCGACGAGATGAAAAAAGTAAATTCAAAAATTTGAATATTATTCCCAGTAAAAAATAAAAAAATAAGAACAGTGTAGAAGCAATGGGAACTGTTACCGTAATGCATTGTTTCTAGAAAATTGGGATGAGTCACTGGATCTACAGAAACCCTCAAACGGTTTTCTAAATTAATAGTTTCTCTAATACTTATCAAAAAGCTACGTAACCTAAAATTTTTCAATCTTCAATAGTTTTTTAGCAGCTCAACATAACGGAAATCATT</canonical>
            <polymorphic>GATCAGTTTCTGGAACTGGGTGACCTTTGTTTTGAATCAGAAAATCATGGATCCAGTTAGCCAAACAAGGCAATGGCTCCGCACCGTAACGAGCAACTTCCCATGGAACATTGACAAATATTGATCTGGAGACCCGAGCATTCAAATGTTGGGCAAGGATGAGAGCACTAAAAATGCATTTAAATATTATAGATTAAACGTAGAGATTTCTACTTGCCGCGTTTTATGATTGCCATTTTTGAATGCTTCGACATCCTCAGCACTGATTGGATCCTCGACCAGTGGAGGCAACGGTACTTCGCGGTTCAGTGGTGGAAAAGGATTATCCATTTCTTGACAACTTCTGCAATTTGTACTAGTTTTTAGGGAAAAAAATCAAGAGAGAATATGGACATGACGGGAGAGCGACAGCTCAATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATATATCATTCAATTAGAAAATTACCACGGTAGACGTATGGCTGACAGCCSTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTACCGCTATAAAAATTTTATGGCTCGTTGTATGCAAATGGAATAAAGACTGTGTGGGCTTCTTCTAGGGTGGGAGACCGAACGATGAGATGAAACAAAACCGAAATCTTACCATATAGTCTTTTTTGACGAAAAGATGGGAAACCGAAAATTTATGAGAAACGGTAAAGATGGGATTGTGCGACGAGATGAAAAAAGTAAATTCAAAAATTTGAATATTATTCCCAGTAAAAAATAAAAAAATAAGAACAGTGTAGAAGCAATGGGAACTGTTACCGTAATGCATTGTTTCTAGAAAATTGGGATGAGTCACTGGATCTACAGAAACCCTCAAACGGTTTTCTAAATTAATAGTTTCTCTAATACTTATCAAAAAGCTACGTAACCTAAAATTTTTCAATCTTCAATAGTTTTTTAGCAGCTCAACATAACGGAAATCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNNGTC</site>
                <isoschizomers>
                    <enzyme>BoxI</enzyme>
                    <enzyme>BstPAI</enzyme>
                    <enzyme>PshAI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGATTATCCATTTCTTGACA</pcr_primer_p1>
		<pcr_primer_p2>GTACTGTTCCCAAAGTTCTTACA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAGGATTATCCATTTCTTGACAACTTCTGCAATTTGTACTAGTTTTTAGGGAAAAAAATCAAGAGAGAATATGGACATGACGGGAGAGCGACAGCTCAATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATATATCATTCAATTAGAAAATTACCACGGTAGACGTATGGCTGACAGCCGTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTAC</canonical_amplicon>
		<polymorphic_amplicon>AAGGATTATCCATTTCTTGACAACTTCTGCAATTTGTACTAGTTTTTAGGGAAAAAAATCAAGAGAGAATATGGACATGACGGGAGAGCGACAGCTCAATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATATATCATTCAATTAGAAAATTACCACGGTAGACGTATGGCTGACAGCCSTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14465</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>208338</contig_pos>
        <strand>+</strand>
        <context>GGCTGACAGC[C/T]STCTGTTTAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATATATCATTCAATTAGAAAATTACCACGGTAGACGTATGGCTGACAGC</left_flank>
        <right_flank>GTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATCAGTTTCTGGAACTGGGTGACCTTTGTTTTGAATCAGAAAATCATGGATCCAGTTAGCCAAACAAGGCAATGGCTCCGCACCGTAACGAGCAACTTCCCATGGAACATTGACAAATATTGATCTGGAGACCCGAGCATTCAAATGTTGGGCAAGGATGAGAGCACTAAAAATGCATTTAAATATTATAGATTAAACGTAGAGATTTCTACTTGCCGCGTTTTATGATTGCCATTTTTGAATGCTTCGACATCCTCAGCACTGATTGGATCCTCGACCAGTGGAGGCAACGGTACTTCGCGGTTCAGTGGTGGAAAAGGATTATCCATTTCTTGACAACTTCTGCAATTTGTACTAGTTTTTAGGGAAAAAAATCAAGAGAGAATATGGACATGACGGGAGAGCGACAGCTCAATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATATATCATTCAATTAGAAAATTACCACGGTAGACGTATGGCTGACAGCCGTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTACCGCTATAAAAATTTTATGGCTCGTTGTATGCAAATGGAATAAAGACTGTGTGGGCTTCTTCTAGGGTGGGAGACCGAACGATGAGATGAAACAAAACCGAAATCTTACCATATAGTCTTTTTTGACGAAAAGATGGGAAACCGAAAATTTATGAGAAACGGTAAAGATGGGATTGTGCGACGAGATGAAAAAAGTAAATTCAAAAATTTGAATATTATTCCCAGTAAAAAATAAAAAAATAAGAACAGTGTAGAAGCAATGGGAACTGTTACCGTAATGCATTGTTTCTAGAAAATTGGGATGAGTCACTGGATCTACAGAAACCCTCAAACGGTTTTCTAAATTAATAGTTTCTCTAATACTTATCAAAAAGCTACGTAACCTAAAATTTTTCAATCTTCAATAGTTTTTTAGCAGCTCAACATAACGGAAATCAT</canonical>
            <polymorphic>CGATCAGTTTCTGGAACTGGGTGACCTTTGTTTTGAATCAGAAAATCATGGATCCAGTTAGCCAAACAAGGCAATGGCTCCGCACCGTAACGAGCAACTTCCCATGGAACATTGACAAATATTGATCTGGAGACCCGAGCATTCAAATGTTGGGCAAGGATGAGAGCACTAAAAATGCATTTAAATATTATAGATTAAACGTAGAGATTTCTACTTGCCGCGTTTTATGATTGCCATTTTTGAATGCTTCGACATCCTCAGCACTGATTGGATCCTCGACCAGTGGAGGCAACGGTACTTCGCGGTTCAGTGGTGGAAAAGGATTATCCATTTCTTGACAACTTCTGCAATTTGTACTAGTTTTTAGGGAAAAAAATCAAGAGAGAATATGGACATGACGGGAGAGCGACAGCTCAATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATATATCATTCAATTAGAAAATTACCACGGTAGACGTATGGCTGACAGCYGTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTACCGCTATAAAAATTTTATGGCTCGTTGTATGCAAATGGAATAAAGACTGTGTGGGCTTCTTCTAGGGTGGGAGACCGAACGATGAGATGAAACAAAACCGAAATCTTACCATATAGTCTTTTTTGACGAAAAGATGGGAAACCGAAAATTTATGAGAAACGGTAAAGATGGGATTGTGCGACGAGATGAAAAAAGTAAATTCAAAAATTTGAATATTATTCCCAGTAAAAAATAAAAAAATAAGAACAGTGTAGAAGCAATGGGAACTGTTACCGTAATGCATTGTTTCTAGAAAATTGGGATGAGTCACTGGATCTACAGAAACCCTCAAACGGTTTTCTAAATTAATAGTTTCTCTAATACTTATCAAAAAGCTACGTAACCTAAAATTTTTCAATCTTCAATAGTTTTTTAGCAGCTCAACATAACGGAAATCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>335 319 84 79 61 44 35 20 16 7</canonical_bands>
                <polymorphic_bands>335 319 91 79 61 44 35 20 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGATTATCCATTTCTTGACA</pcr_primer_p1>
		<pcr_primer_p2>GTACTGTTCCCAAAGTTCTTACA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAGGATTATCCATTTCTTGACAACTTCTGCAATTTGTACTAGTTTTTAGGGAAAAAAATCAAGAGAGAATATGGACATGACGGGAGAGCGACAGCTCAATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATATATCATTCAATTAGAAAATTACCACGGTAGACGTATGGCTGACAGCCGTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTAC</canonical_amplicon>
		<polymorphic_amplicon>AAGGATTATCCATTTCTTGACAACTTCTGCAATTTGTACTAGTTTTTAGGGAAAAAAATCAAGAGAGAATATGGACATGACGGGAGAGCGACAGCTCAATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATATATCATTCAATTAGAAAATTACCACGGTAGACGTATGGCTGACAGCYGTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14466</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>208304</contig_pos>
        <strand>+</strand>
        <context>TCATTCAATY[A/G]GAAAATTACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATATATCATTCAATT</left_flank>
        <right_flank>GAAAATTACCACGGTAGACGTATGGCTGACAGCCGTCTGTTTAGTCTAGC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCTCCTTTCAACATACATTTCGAGGATTTGGCGATCAGTTTCTGGAACTGGGTGACCTTTGTTTTGAATCAGAAAATCATGGATCCAGTTAGCCAAACAAGGCAATGGCTCCGCACCGTAACGAGCAACTTCCCATGGAACATTGACAAATATTGATCTGGAGACCCGAGCATTCAAATGTTGGGCAAGGATGAGAGCACTAAAAATGCATTTAAATATTATAGATTAAACGTAGAGATTTCTACTTGCCGCGTTTTATGATTGCCATTTTTGAATGCTTCGACATCCTCAGCACTGATTGGATCCTCGACCAGTGGAGGCAACGGTACTTCGCGGTTCAGTGGTGGAAAAGGATTATCCATTTCTTGACAACTTCTGCAATTTGTACTAGTTTTTAGGGAAAAAAATCAAGAGAGAATATGGACATGACGGGAGAGCGACAGCTCAATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATATATCATTCAATTAGAAAATTACCACGGTAGACGTATGGCTGACAGCCGTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTACCGCTATAAAAATTTTATGGCTCGTTGTATGCAAATGGAATAAAGACTGTGTGGGCTTCTTCTAGGGTGGGAGACCGAACGATGAGATGAAACAAAACCGAAATCTTACCATATAGTCTTTTTTGACGAAAAGATGGGAAACCGAAAATTTATGAGAAACGGTAAAGATGGGATTGTGCGACGAGATGAAAAAAGTAAATTCAAAAATTTGAATATTATTCCCAGTAAAAAATAAAAAAATAAGAACAGTGTAGAAGCAATGGGAACTGTTACCGTAATGCATTGTTTCTAGAAAATTGGGATGAGTCACTGGATCTACAGAAACCCTCAAACGGTTTTCTAAATTAATAGTTTCTCTAATACTTATCAAAAAGCTACGTAACCTAAAATTTTTCAATCTTCAA</canonical>
            <polymorphic>TCTTCTCCTTTCAACATACATTTCGAGGATTTGGCGATCAGTTTCTGGAACTGGGTGACCTTTGTTTTGAATCAGAAAATCATGGATCCAGTTAGCCAAACAAGGCAATGGCTCCGCACCGTAACGAGCAACTTCCCATGGAACATTGACAAATATTGATCTGGAGACCCGAGCATTCAAATGTTGGGCAAGGATGAGAGCACTAAAAATGCATTTAAATATTATAGATTAAACGTAGAGATTTCTACTTGCCGCGTTTTATGATTGCCATTTTTGAATGCTTCGACATCCTCAGCACTGATTGGATCCTCGACCAGTGGAGGCAACGGTACTTCGCGGTTCAGTGGTGGAAAAGGATTATCCATTTCTTGACAACTTCTGCAATTTGTACTAGTTTTTAGGGAAAAAAATCAAGAGAGAATATGGACATGACGGGAGAGCGACAGCTCAATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATATATCATTCAATTRGAAAATTACCACGGTAGACGTATGGCTGACAGCCGTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTACCGCTATAAAAATTTTATGGCTCGTTGTATGCAAATGGAATAAAGACTGTGTGGGCTTCTTCTAGGGTGGGAGACCGAACGATGAGATGAAACAAAACCGAAATCTTACCATATAGTCTTTTTTGACGAAAAGATGGGAAACCGAAAATTTATGAGAAACGGTAAAGATGGGATTGTGCGACGAGATGAAAAAAGTAAATTCAAAAATTTGAATATTATTCCCAGTAAAAAATAAAAAAATAAGAACAGTGTAGAAGCAATGGGAACTGTTACCGTAATGCATTGTTTCTAGAAAATTGGGATGAGTCACTGGATCTACAGAAACCCTCAAACGGTTTTCTAAATTAATAGTTTCTCTAATACTTATCAAAAAGCTACGTAACCTAAAATTTTTCAATCTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGATTATCCATTTCTTGACA</pcr_primer_p1>
		<pcr_primer_p2>GTACTGTTCCCAAAGTTCTTACA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAGGATTATCCATTTCTTGACAACTTCTGCAATTTGTACTAGTTTTTAGGGAAAAAAATCAAGAGAGAATATGGACATGACGGGAGAGCGACAGCTCAATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATATATCATTCAATTAGAAAATTACCACGGTAGACGTATGGCTGACAGCCGTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTAC</canonical_amplicon>
		<polymorphic_amplicon>AAGGATTATCCATTTCTTGACAACTTCTGCAATTTGTACTAGTTTTTAGGGAAAAAAATCAAGAGAGAATATGGACATGACGGGAGAGCGACAGCTCAATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATATATCATTCAATTRGAAAATTACCACGGTAGACGTATGGCTGACAGCCGTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14467</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>208303</contig_pos>
        <strand>+</strand>
        <context>ATCATTCAAT[C/T]RGAAAATTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATATATCATTCAAT</left_flank>
        <right_flank>AGAAAATTACCACGGTAGACGTATGGCTGACAGCCGTCTGTTTAGTCTAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTCTCCTTTCAACATACATTTCGAGGATTTGGCGATCAGTTTCTGGAACTGGGTGACCTTTGTTTTGAATCAGAAAATCATGGATCCAGTTAGCCAAACAAGGCAATGGCTCCGCACCGTAACGAGCAACTTCCCATGGAACATTGACAAATATTGATCTGGAGACCCGAGCATTCAAATGTTGGGCAAGGATGAGAGCACTAAAAATGCATTTAAATATTATAGATTAAACGTAGAGATTTCTACTTGCCGCGTTTTATGATTGCCATTTTTGAATGCTTCGACATCCTCAGCACTGATTGGATCCTCGACCAGTGGAGGCAACGGTACTTCGCGGTTCAGTGGTGGAAAAGGATTATCCATTTCTTGACAACTTCTGCAATTTGTACTAGTTTTTAGGGAAAAAAATCAAGAGAGAATATGGACATGACGGGAGAGCGACAGCTCAATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATATATCATTCAATTAGAAAATTACCACGGTAGACGTATGGCTGACAGCCGTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTACCGCTATAAAAATTTTATGGCTCGTTGTATGCAAATGGAATAAAGACTGTGTGGGCTTCTTCTAGGGTGGGAGACCGAACGATGAGATGAAACAAAACCGAAATCTTACCATATAGTCTTTTTTGACGAAAAGATGGGAAACCGAAAATTTATGAGAAACGGTAAAGATGGGATTGTGCGACGAGATGAAAAAAGTAAATTCAAAAATTTGAATATTATTCCCAGTAAAAAATAAAAAAATAAGAACAGTGTAGAAGCAATGGGAACTGTTACCGTAATGCATTGTTTCTAGAAAATTGGGATGAGTCACTGGATCTACAGAAACCCTCAAACGGTTTTCTAAATTAATAGTTTCTCTAATACTTATCAAAAAGCTACGTAACCTAAAATTTTTCAATCTTCA</canonical>
            <polymorphic>TTCTTCTCCTTTCAACATACATTTCGAGGATTTGGCGATCAGTTTCTGGAACTGGGTGACCTTTGTTTTGAATCAGAAAATCATGGATCCAGTTAGCCAAACAAGGCAATGGCTCCGCACCGTAACGAGCAACTTCCCATGGAACATTGACAAATATTGATCTGGAGACCCGAGCATTCAAATGTTGGGCAAGGATGAGAGCACTAAAAATGCATTTAAATATTATAGATTAAACGTAGAGATTTCTACTTGCCGCGTTTTATGATTGCCATTTTTGAATGCTTCGACATCCTCAGCACTGATTGGATCCTCGACCAGTGGAGGCAACGGTACTTCGCGGTTCAGTGGTGGAAAAGGATTATCCATTTCTTGACAACTTCTGCAATTTGTACTAGTTTTTAGGGAAAAAAATCAAGAGAGAATATGGACATGACGGGAGAGCGACAGCTCAATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATATATCATTCAATYAGAAAATTACCACGGTAGACGTATGGCTGACAGCCGTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTACCGCTATAAAAATTTTATGGCTCGTTGTATGCAAATGGAATAAAGACTGTGTGGGCTTCTTCTAGGGTGGGAGACCGAACGATGAGATGAAACAAAACCGAAATCTTACCATATAGTCTTTTTTGACGAAAAGATGGGAAACCGAAAATTTATGAGAAACGGTAAAGATGGGATTGTGCGACGAGATGAAAAAAGTAAATTCAAAAATTTGAATATTATTCCCAGTAAAAAATAAAAAAATAAGAACAGTGTAGAAGCAATGGGAACTGTTACCGTAATGCATTGTTTCTAGAAAATTGGGATGAGTCACTGGATCTACAGAAACCCTCAAACGGTTTTCTAAATTAATAGTTTCTCTAATACTTATCAAAAAGCTACGTAACCTAAAATTTTTCAATCTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>383 136 89 67 56 51 48 47 46 45 16 8 8</canonical_bands>
                <polymorphic_bands>383 136 89 67 56 54 51 48 47 45 16 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGATTATCCATTTCTTGACA</pcr_primer_p1>
		<pcr_primer_p2>GTACTGTTCCCAAAGTTCTTACA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAGGATTATCCATTTCTTGACAACTTCTGCAATTTGTACTAGTTTTTAGGGAAAAAAATCAAGAGAGAATATGGACATGACGGGAGAGCGACAGCTCAATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATATATCATTCAATTAGAAAATTACCACGGTAGACGTATGGCTGACAGCCGTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTAC</canonical_amplicon>
		<polymorphic_amplicon>AAGGATTATCCATTTCTTGACAACTTCTGCAATTTGTACTAGTTTTTAGGGAAAAAAATCAAGAGAGAATATGGACATGACGGGAGAGCGACAGCTCAATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATATATCATTCAATYAGAAAATTACCACGGTAGACGTATGGCTGACAGCCGTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14468</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>222947</contig_pos>
        <strand></strand>
        <context>TTTAGGCTGG[A/G]RTGGAAGCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTACATATAGCTTATGAAATAAACTGAAAAAAAAGATTTTTAGGCTGG</left_flank>
        <right_flank>ATGGAAGCTGTCATCGAGGATCAAGTCACCAACCGGTTCTCTGCAGCTCA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTCTACTGATCTTCCTGGCAGTCACCGGCAAGACTTTGGGACTTCGTGAGCTTTATGTGGAAACATTGATTCGAATTTTCGAGGTAAGTTTTTGGTTGGGGAGGAGTGAAATGCGGGAGGAGAGCAAAGATTACTCTGATAACCCACTTATCATTATCATTTTTTCAGTGGGGAGCCACGCTCAGCGAAGAATCTGATGTCGAGGAAGACTCGGTTATTGAAGAAGATGAATTCCCGGCACAACACAAGAAAATCCGGCGGTCTTCATCCTCATCCGACCTTGGTGAGTTTCTTTTTTTTTAATTTTTTGATCAATACATTTTTCAGGCATCATCAATCGAGAGAAATCTGACATCATCGACGCCAAACTGCATGAGACGAATGTAACGGAATCAAAACAATCAACAGTCAGCGTTCTTGTCGATGATACTCTGGATTTTATTACGGTATTACATATAGCTTATGAAATAAACTGAAAAAAAAGATTTTTAGGCTGGAATGGAAGCTGTCATCGAGGATCAAGTCACCAACCGGTTCTCTGCAGCTCAATTACCATCATGGAATTTGCTAAGTCGCACCAAATTTACGTTCCATTTTCTTAAGTGAGTATTTGAAAATTTGAAAAAATGGAAAAAGTTGAAGAACATTGAAATAATCAAGTCAAAAGACATCAACACATACAGCACTGGTCAATAAAGTATACAAAAACTCATTCTTCAGTTGATTTTTGGCCAGTTTGATCATTTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATT</canonical>
            <polymorphic>CCTTCTACTGATCTTCCTGGCAGTCACCGGCAAGACTTTGGGACTTCGTGAGCTTTATGTGGAAACATTGATTCGAATTTTCGAGGTAAGTTTTTGGTTGGGGAGGAGTGAAATGCGGGAGGAGAGCAAAGATTACTCTGATAACCCACTTATCATTATCATTTTTTCAGTGGGGAGCCACGCTCAGCGAAGAATCTGATGTCGAGGAAGACTCGGTTATTGAAGAAGATGAATTCCCGGCACAACACAAGAAAATCCGGCGGTCTTCATCCTCATCCGACCTTGGTGAGTTTCTTTTTTTTTAATTTTTTGATCAATACATTTTTCAGGCATCATCAATCGAGAGAAATCTGACATCATCGACGCCAAACTGCATGAGACGAATGTAACGGAATCAAAACAATCAACAGTCAGCGTTCTTGTCGATGATACTCTGGATTTTATTACGGTATTACATATAGCTTATGAAATAAACTGAAAAAAAAGATTTTTAGGCTGGRATGGAAGCTGTCATCGAGGATCAAGTCACCAACCGGTTCTCTGCAGCTCAATTACCATCATGGAATTTGCTAAGTCGCACCAAATTTACGTTCCATTTTCTTAAGTGAGTATTTGAAAATTTGAAAAAATGGAAAAAGTTGAAGAACATTGAAATAATCAAGTCAAAAGACATCAACACATACAGCACTGGTCAATAAAGTATACAAAAACTCATTCTTCAGTTGATTTTTGGCCAGTTTGATCATTTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGATGATACTCTGGATTTTATT</pcr_primer_p1>
		<pcr_primer_p2>TGATGTCTTTTGACTTGATTATTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TCGATGATACTCTGGATTTTATTACGGTATTACATATAGCTTATGAAATAAACTGAAAAAAAAGATTTTTAGGCTGGAATGGAAGCTGTCATCGAGGATCAAGTCACCAACCGGTTCTCTGCAGCTCAATTACCATCATGGAATTTGCTAAGTCGCACCAAATTTACGTTCCATTTTCTTAAGTGAGTATTTGAAAATTTGAAAAAATGGAAAAAGTTGAAGAACATTGAAATAATCAAGTCAAAAGACATCA</canonical_amplicon>
		<polymorphic_amplicon>TCGATGATACTCTGGATTTTATTACGGTATTACATATAGCTTATGAAATAAACTGAAAAAAAAGATTTTTAGGCTGGRATGGAAGCTGTCATCGAGGATCAAGTCACCAACCGGTTCTCTGCAGCTCAATTACCATCATGGAATTTGCTAAGTCGCACCAAATTTACGTTCCATTTTCTTAAGTGAGTATTTGAAAATTTGAAAAAATGGAAAAAGTTGAAGAACATTGAAATAATCAAGTCAAAAGACATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14469</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>223098</contig_pos>
        <strand>+</strand>
        <context>GAAGAACATT[A/G]AAATAATCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAAGTGAGTATTTGAAAATTTGAAAAAATGGAAAAAGTTGAAGAACATT</left_flank>
        <right_flank>AAATAATCAAGTCAAAAGACATCAACACATACAGCACTGGTCAATAAAGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCATTATCATTTTTTCAGTGGGGAGCCACGCTCAGCGAAGAATCTGATGTCGAGGAAGACTCGGTTATTGAAGAAGATGAATTCCCGGCACAACACAAGAAAATCCGGCGGTCTTCATCCTCATCCGACCTTGGTGAGTTTCTTTTTTTTTAATTTTTTGATCAATACATTTTTCAGGCATCATCAATCGAGAGAAATCTGACATCATCGACGCCAAACTGCATGAGACGAATGTAACGGAATCAAAACAATCAACAGTCAGCGTTCTTGTCGATGATACTCTGGATTTTATTACGGTATTACATATAGCTTATGAAATAAACTGAAAAAAAAGATTTTTAGGCTGGAATGGAAGCTGTCATCGAGGATCAAGTCACCAACCGGTTCTCTGCAGCTCAATTACCATCATGGAATTTGCTAAGTCGCACCAAATTTACGTTCCATTTTCTTAAGTGAGTATTTGAAAATTTGAAAAAATGGAAAAAGTTGAAGAACATTGAAATAATCAAGTCAAAAGACATCAACACATACAGCACTGGTCAATAAAGTATACAAAAACTCATTCTTCAGTTGATTTTTGGCCAGTTTGATCATTTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATTGGTACTATACATGAGAGAGTTCGGATAACTTGAGCAATTTTTATAAACATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAG</canonical>
            <polymorphic>ATCATTATCATTTTTTCAGTGGGGAGCCACGCTCAGCGAAGAATCTGATGTCGAGGAAGACTCGGTTATTGAAGAAGATGAATTCCCGGCACAACACAAGAAAATCCGGCGGTCTTCATCCTCATCCGACCTTGGTGAGTTTCTTTTTTTTTAATTTTTTGATCAATACATTTTTCAGGCATCATCAATCGAGAGAAATCTGACATCATCGACGCCAAACTGCATGAGACGAATGTAACGGAATCAAAACAATCAACAGTCAGCGTTCTTGTCGATGATACTCTGGATTTTATTACGGTATTACATATAGCTTATGAAATAAACTGAAAAAAAAGATTTTTAGGCTGGAATGGAAGCTGTCATCGAGGATCAAGTCACCAACCGGTTCTCTGCAGCTCAATTACCATCATGGAATTTGCTAAGTCGCACCAAATTTACGTTCCATTTTCTTAAGTGAGTATTTGAAAATTTGAAAAAATGGAAAAAGTTGAAGAACATTRAAATAATCAAGTCAAAAGACATCAACACATACAGCACTGGTCAATAAAGTATACAAAAACTCATTCTTCAGTTGATTTTTGGCCAGTTTGATCATTTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATTGGTACTATACATGAGAGAGTTCGGATAACTTGAGCAATTTTTATAAACATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATTTTCTTAAGTGAGTATTTGA</pcr_primer_p1>
		<pcr_primer_p2>TTAGCTCGCAATATCATGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>473</pcr_amplicon_size>
		<canonical_amplicon>CCATTTTCTTAAGTGAGTATTTGAAAATTTGAAAAAATGGAAAAAGTTGAAGAACATTGAAATAATCAAGTCAAAAGACATCAACACATACAGCACTGGTCAATAAAGTATACAAAAACTCATTCTTCAGTTGATTTTTGGCCAGTTTGATCATTTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATTGGTACTATACATGAGAGAGTTCGGATAACTTGAGCAATTTTTATAAACATGATATTGCGAGCTAA</canonical_amplicon>
		<polymorphic_amplicon>CCATTTTCTTAAGTGAGTATTTGAAAATTTGAAAAAATGGAAAAAGTTGAAGAACATTRAAATAATCAAGTCAAAAGACATCAACACATACAGCACTGGTCAATAAAGTATACAAAAACTCATTCTTCAGTTGATTTTTGGCCAGTTTGATCATTTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATTGGTACTATACATGAGAGAGTTCGGATAACTTGAGCAATTTTTATAAACATGATATTGCGAGCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14470</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>223139</contig_pos>
        <strand></strand>
        <context>acagcactgg[T/C]caataaagta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAGAACATTGAAATAATCAAGTCAAAAGACATCAACACATACAGCACTGG</left_flank>
        <right_flank>CAATAAAGTATACAAAAACTCATTCTTCAGTTGATTTTTGGCCAGTTTGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCTGATGTCGAGGAAGACTCGGTTATTGAAGAAGATGAATTCCCGGCACAACACAAGAAAATCCGGCGGTCTTCATCCTCATCCGACCTTGGTGAGTTTCTTTTTTTTTAATTTTTTGATCAATACATTTTTCAGGCATCATCAATCGAGAGAAATCTGACATCATCGACGCCAAACTGCATGAGACGAATGTAACGGAATCAAAACAATCAACAGTCAGCGTTCTTGTCGATGATACTCTGGATTTTATTACGGTATTACATATAGCTTATGAAATAAACTGAAAAAAAAGATTTTTAGGCTGGAATGGAAGCTGTCATCGAGGATCAAGTCACCAACCGGTTCTCTGCAGCTCAATTACCATCATGGAATTTGCTAAGTCGCACCAAATTTACGTTCCATTTTCTTAAGTGAGTATTTGAAAATTTGAAAAAATGGAAAAAGTTGAAGAACATTGAAATAATCAAGTCAAAAGACATCAACACATACAGCACTGGTCAATAAAGTATACAAAAACTCATTCTTCAGTTGATTTTTGGCCAGTTTGATCATTTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATTGGTACTATACATGAGAGAGTTCGGATAACTTGAGCAATTTTTATAAACATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATG</canonical>
            <polymorphic>AATCTGATGTCGAGGAAGACTCGGTTATTGAAGAAGATGAATTCCCGGCACAACACAAGAAAATCCGGCGGTCTTCATCCTCATCCGACCTTGGTGAGTTTCTTTTTTTTTAATTTTTTGATCAATACATTTTTCAGGCATCATCAATCGAGAGAAATCTGACATCATCGACGCCAAACTGCATGAGACGAATGTAACGGAATCAAAACAATCAACAGTCAGCGTTCTTGTCGATGATACTCTGGATTTTATTACGGTATTACATATAGCTTATGAAATAAACTGAAAAAAAAGATTTTTAGGCTGGAATGGAAGCTGTCATCGAGGATCAAGTCACCAACCGGTTCTCTGCAGCTCAATTACCATCATGGAATTTGCTAAGTCGCACCAAATTTACGTTCCATTTTCTTAAGTGAGTATTTGAAAATTTGAAAAAATGGAAAAAGTTGAAGAACATTGAAATAATCAAGTCAAAAGACATCAACACATACAGCACTGGYCAATAAAGTATACAAAAACTCATTCTTCAGTTGATTTTTGGCCAGTTTGATCATTTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATTGGTACTATACATGAGAGAGTTCGGATAACTTGAGCAATTTTTATAAACATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGGAAAAAGTTGAAGAACAT</pcr_primer_p1>
		<pcr_primer_p2>TTAGCTCGCAATATCATGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>439</pcr_amplicon_size>
		<canonical_amplicon>AAATGGAAAAAGTTGAAGAACATTGAAATAATCAAGTCAAAAGACATCAACACATACAGCACTGGTCAATAAAGTATACAAAAACTCATTCTTCAGTTGATTTTTGGCCAGTTTGATCATTTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATTGGTACTATACATGAGAGAGTTCGGATAACTTGAGCAATTTTTATAAACATGATATTGCGAGCTAA</canonical_amplicon>
		<polymorphic_amplicon>AAATGGAAAAAGTTGAAGAACATTGAAATAATCAAGTCAAAAGACATCAACACATACAGCACTGGYCAATAAAGTATACAAAAACTCATTCTTCAGTTGATTTTTGGCCAGTTTGATCATTTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATTGGTACTATACATGAGAGAGTTCGGATAACTTGAGCAATTTTTATAAACATGATATTGCGAGCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14471</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>223179</contig_pos>
        <strand></strand>
        <context>gttgattttt[G/A]gccagtttga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACAGCACTGGTCAATAAAGTATACAAAAACTCATTCTTCAGTTGATTTTT</left_flank>
        <right_flank>GCCAGTTTGATCATTTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCCCGGCACAACACAAGAAAATCCGGCGGTCTTCATCCTCATCCGACCTTGGTGAGTTTCTTTTTTTTTAATTTTTTGATCAATACATTTTTCAGGCATCATCAATCGAGAGAAATCTGACATCATCGACGCCAAACTGCATGAGACGAATGTAACGGAATCAAAACAATCAACAGTCAGCGTTCTTGTCGATGATACTCTGGATTTTATTACGGTATTACATATAGCTTATGAAATAAACTGAAAAAAAAGATTTTTAGGCTGGAATGGAAGCTGTCATCGAGGATCAAGTCACCAACCGGTTCTCTGCAGCTCAATTACCATCATGGAATTTGCTAAGTCGCACCAAATTTACGTTCCATTTTCTTAAGTGAGTATTTGAAAATTTGAAAAAATGGAAAAAGTTGAAGAACATTGAAATAATCAAGTCAAAAGACATCAACACATACAGCACTGGTCAATAAAGTATACAAAAACTCATTCTTCAGTTGATTTTTGGCCAGTTTGATCATTTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATTGGTACTATACATGAGAGAGTTCGGATAACTTGAGCAATTTTTATAAACATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAG</canonical>
            <polymorphic>ATTCCCGGCACAACACAAGAAAATCCGGCGGTCTTCATCCTCATCCGACCTTGGTGAGTTTCTTTTTTTTTAATTTTTTGATCAATACATTTTTCAGGCATCATCAATCGAGAGAAATCTGACATCATCGACGCCAAACTGCATGAGACGAATGTAACGGAATCAAAACAATCAACAGTCAGCGTTCTTGTCGATGATACTCTGGATTTTATTACGGTATTACATATAGCTTATGAAATAAACTGAAAAAAAAGATTTTTAGGCTGGAATGGAAGCTGTCATCGAGGATCAAGTCACCAACCGGTTCTCTGCAGCTCAATTACCATCATGGAATTTGCTAAGTCGCACCAAATTTACGTTCCATTTTCTTAAGTGAGTATTTGAAAATTTGAAAAAATGGAAAAAGTTGAAGAACATTGAAATAATCAAGTCAAAAGACATCAACACATACAGCACTGGTCAATAAAGTATACAAAAACTCATTCTTCAGTTGATTTTTRGCCAGTTTGATCATTTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATTGGTACTATACATGAGAGAGTTCGGATAACTTGAGCAATTTTTATAAACATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGGCCA</site>
                <isoschizomers>
                    <enzyme>BalI</enzyme>
                    <enzyme>MlsI</enzyme>
                    <enzyme>MluNI</enzyme>
                    <enzyme>MscI</enzyme>
                    <enzyme>Msp20I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>229 194 187 134 132 39 34 27 12 12</canonical_bands>
                <polymorphic_bands>381 229 134 132 39 34 27 12 12</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAGTCAAAAGACATCAACAC</pcr_primer_p1>
		<pcr_primer_p2>TTAGCTCGCAATATCATGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>408</pcr_amplicon_size>
		<canonical_amplicon>TCAAGTCAAAAGACATCAACACATACAGCACTGGTCAATAAAGTATACAAAAACTCATTCTTCAGTTGATTTTTGGCCAGTTTGATCATTTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATTGGTACTATACATGAGAGAGTTCGGATAACTTGAGCAATTTTTATAAACATGATATTGCGAGCTAA</canonical_amplicon>
		<polymorphic_amplicon>TCAAGTCAAAAGACATCAACACATACAGCACTGGTCAATAAAGTATACAAAAACTCATTCTTCAGTTGATTTTTRGCCAGTTTGATCATTTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATTGGTACTATACATGAGAGAGTTCGGATAACTTGAGCAATTTTTATAAACATGATATTGCGAGCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14475</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>223472</contig_pos>
        <strand>+</strand>
        <context>GAGAGTTCGG[A/G]TAACTTGAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATGTTTTTGTACATCTTTTAGATTGGTACTATACATGAGAGAGTTCGG</left_flank>
        <right_flank>TAACTTGAGCAATTTTTATAAACATGATATTGCGAGCTAAATTACAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACCAACCGGTTCTCTGCAGCTCAATTACCATCATGGAATTTGCTAAGTCGCACCAAATTTACGTTCCATTTTCTTAAGTGAGTATTTGAAAATTTGAAAAAATGGAAAAAGTTGAAGAACATTGAAATAATCAAGTCAAAAGACATCAACACATACAGCACTGGTCAATAAAGTATACAAAAACTCATTCTTCAGTTGATTTTTGGCCAGTTTGATCATTTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATTGGTACTATACATGAGAGAGTTCGGATAACTTGAGCAATTTTTATAAACATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAGACTCACAGCTCACAGCGTCACATTTGACACATTGAGATTTTCAAAGCCATGAAAACTGATTATTTAGTAAACCATACCAAAACTTATAAAATGAACAAGTTTAATAGATAAGTTTTGTTGTTAGAAAGACTACTAAAATTTGGAAAACATTTTCTTTAAAAAATCTCTTTTCCAGCTGGCAGCTGACCGCACTCTGGATCGCTGGGTTCATGTTCCGCTACTACGTGCTTGTCCCATGCAGAATTGCTCTGTTCGTCATTGCAATCGTACTGATGATCGTTTCAACATCTATC</canonical>
            <polymorphic>TCACCAACCGGTTCTCTGCAGCTCAATTACCATCATGGAATTTGCTAAGTCGCACCAAATTTACGTTCCATTTTCTTAAGTGAGTATTTGAAAATTTGAAAAAATGGAAAAAGTTGAAGAACATTGAAATAATCAAGTCAAAAGACATCAACACATACAGCACTGGTCAATAAAGTATACAAAAACTCATTCTTCAGTTGATTTTTGGCCAGTTTGATCATTTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATTGGTACTATACATGAGAGAGTTCGGRTAACTTGAGCAATTTTTATAAACATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAGACTCACAGCTCACAGCGTCACATTTGACACATTGAGATTTTCAAAGCCATGAAAACTGATTATTTAGTAAACCATACCAAAACTTATAAAATGAACAAGTTTAATAGATAAGTTTTGTTGTTAGAAAGACTACTAAAATTTGGAAAACATTTTCTTTAAAAAATCTCTTTTCCAGCTGGCAGCTGACCGCACTCTGGATCGCTGGGTTCATGTTCCGCTACTACGTGCTTGTCCCATGCAGAATTGCTCTGTTCGTCATTGCAATCGTACTGATGATCGTTTCAACATCTATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>329 294 189 85 84 19</canonical_bands>
                <polymorphic_bands>329 294 273 85 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAGTCAAAAGACATCAACAC</pcr_primer_p1>
		<pcr_primer_p2>AGGTTGCGATAACAAGTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>436</pcr_amplicon_size>
		<canonical_amplicon>TCAAGTCAAAAGACATCAACACATACAGCACTGGTCAATAAAGTATACAAAAACTCATTCTTCAGTTGATTTTTGGCCAGTTTGATCATTTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATTGGTACTATACATGAGAGAGTTCGGATAACTTGAGCAATTTTTATAAACATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCT</canonical_amplicon>
		<polymorphic_amplicon>TCAAGTCAAAAGACATCAACACATACAGCACTGGTCAATAAAGTATACAAAAACTCATTCTTCAGTTGATTTTTGGCCAGTTTGATCATTTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATTGGTACTATACATGAGAGAGTTCGGRTAACTTGAGCAATTTTTATAAACATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14476</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>223591</contig_pos>
        <strand>+</strand>
        <context>ATGGATGCAT[C/T]AACATAGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCAT</left_flank>
        <right_flank>AACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACATTGAAATAATCAAGTCAAAAGACATCAACACATACAGCACTGGTCAATAAAGTATACAAAAACTCATTCTTCAGTTGATTTTTGGCCAGTTTGATCATTTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATTGGTACTATACATGAGAGAGTTCGGATAACTTGAGCAATTTTTATAAACATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAGACTCACAGCTCACAGCGTCACATTTGACACATTGAGATTTTCAAAGCCATGAAAACTGATTATTTAGTAAACCATACCAAAACTTATAAAATGAACAAGTTTAATAGATAAGTTTTGTTGTTAGAAAGACTACTAAAATTTGGAAAACATTTTCTTTAAAAAATCTCTTTTCCAGCTGGCAGCTGACCGCACTCTGGATCGCTGGGTTCATGTTCCGCTACTACGTGCTTGTCCCATGCAGAATTGCTCTGTTCGTCATTGCAATCGTACTGATGATCGTTTCAACATCTATCATCGGATTGATCCCACATGCAAAGTGAGTTTTCTGCCTAAATTCGAAATCCCCGAAATTGATTAATAATGCGGCCAAATAAAGCTAAAAAACTGAACGTTTTGCAAATTTTGCATTGTT</canonical>
            <polymorphic>AACATTGAAATAATCAAGTCAAAAGACATCAACACATACAGCACTGGTCAATAAAGTATACAAAAACTCATTCTTCAGTTGATTTTTGGCCAGTTTGATCATTTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATTGGTACTATACATGAGAGAGTTCGGATAACTTGAGCAATTTTTATAAACATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATYAACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAGACTCACAGCTCACAGCGTCACATTTGACACATTGAGATTTTCAAAGCCATGAAAACTGATTATTTAGTAAACCATACCAAAACTTATAAAATGAACAAGTTTAATAGATAAGTTTTGTTGTTAGAAAGACTACTAAAATTTGGAAAACATTTTCTTTAAAAAATCTCTTTTCCAGCTGGCAGCTGACCGCACTCTGGATCGCTGGGTTCATGTTCCGCTACTACGTGCTTGTCCCATGCAGAATTGCTCTGTTCGTCATTGCAATCGTACTGATGATCGTTTCAACATCTATCATCGGATTGATCCCACATGCAAAGTGAGTTTTCTGCCTAAATTCGAAATCCCCGAAATTGATTAATAATGCGGCCAAATAAAGCTAAAAAACTGAACGTTTTGCAAATTTTGCATTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGATATTGCGAGCTAAATTAC</pcr_primer_p1>
		<pcr_primer_p2>ATAATCAGTTTTCATGGCTTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAGACTCACAGCTCACAGCGTCACATTTGACACATTGAGATTTTCAAAGCCATGAAAACTGATTAT</canonical_amplicon>
		<polymorphic_amplicon>CATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATYAACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAGACTCACAGCTCACAGCGTCACATTTGACACATTGAGATTTTCAAAGCCATGAAAACTGATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14477</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>223628</contig_pos>
        <strand>+</strand>
        <context>TGGAAACTGC[C/T]AAGACTTGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGC</left_flank>
        <right_flank>AAGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGCACTGGTCAATAAAGTATACAAAAACTCATTCTTCAGTTGATTTTTGGCCAGTTTGATCATTTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATTGGTACTATACATGAGAGAGTTCGGATAACTTGAGCAATTTTTATAAACATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAGACTCACAGCTCACAGCGTCACATTTGACACATTGAGATTTTCAAAGCCATGAAAACTGATTATTTAGTAAACCATACCAAAACTTATAAAATGAACAAGTTTAATAGATAAGTTTTGTTGTTAGAAAGACTACTAAAATTTGGAAAACATTTTCTTTAAAAAATCTCTTTTCCAGCTGGCAGCTGACCGCACTCTGGATCGCTGGGTTCATGTTCCGCTACTACGTGCTTGTCCCATGCAGAATTGCTCTGTTCGTCATTGCAATCGTACTGATGATCGTTTCAACATCTATCATCGGATTGATCCCACATGCAAAGTGAGTTTTCTGCCTAAATTCGAAATCCCCGAAATTGATTAATAATGCGGCCAAATAAAGCTAAAAAACTGAACGTTTTGCAAATTTTGCATTGTTCCAGAACCCGAAAGTTCCTGAACCGAAGATGTATGTT</canonical>
            <polymorphic>ACAGCACTGGTCAATAAAGTATACAAAAACTCATTCTTCAGTTGATTTTTGGCCAGTTTGATCATTTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATTGGTACTATACATGAGAGAGTTCGGATAACTTGAGCAATTTTTATAAACATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGCYAAGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAGACTCACAGCTCACAGCGTCACATTTGACACATTGAGATTTTCAAAGCCATGAAAACTGATTATTTAGTAAACCATACCAAAACTTATAAAATGAACAAGTTTAATAGATAAGTTTTGTTGTTAGAAAGACTACTAAAATTTGGAAAACATTTTCTTTAAAAAATCTCTTTTCCAGCTGGCAGCTGACCGCACTCTGGATCGCTGGGTTCATGTTCCGCTACTACGTGCTTGTCCCATGCAGAATTGCTCTGTTCGTCATTGCAATCGTACTGATGATCGTTTCAACATCTATCATCGGATTGATCCCACATGCAAAGTGAGTTTTCTGCCTAAATTCGAAATCCCCGAAATTGATTAATAATGCGGCCAAATAAAGCTAAAAAACTGAACGTTTTGCAAATTTTGCATTGTTCCAGAACCCGAAAGTTCCTGAACCGAAGATGTATGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGATATTGCGAGCTAAATTAC</pcr_primer_p1>
		<pcr_primer_p2>ATAATCAGTTTTCATGGCTTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAGACTCACAGCTCACAGCGTCACATTTGACACATTGAGATTTTCAAAGCCATGAAAACTGATTAT</canonical_amplicon>
		<polymorphic_amplicon>CATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGCYAAGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAGACTCACAGCTCACAGCGTCACATTTGACACATTGAGATTTTCAAAGCCATGAAAACTGATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14479</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>223643</contig_pos>
        <strand>+</strand>
        <context>CTTGATGGCT[A/G]AAATATGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATGGCT</left_flank>
        <right_flank>AAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAGACTCACAGCTCACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTATACAAAAACTCATTCTTCAGTTGATTTTTGGCCAGTTTGATCATTTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATTGGTACTATACATGAGAGAGTTCGGATAACTTGAGCAATTTTTATAAACATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAGACTCACAGCTCACAGCGTCACATTTGACACATTGAGATTTTCAAAGCCATGAAAACTGATTATTTAGTAAACCATACCAAAACTTATAAAATGAACAAGTTTAATAGATAAGTTTTGTTGTTAGAAAGACTACTAAAATTTGGAAAACATTTTCTTTAAAAAATCTCTTTTCCAGCTGGCAGCTGACCGCACTCTGGATCGCTGGGTTCATGTTCCGCTACTACGTGCTTGTCCCATGCAGAATTGCTCTGTTCGTCATTGCAATCGTACTGATGATCGTTTCAACATCTATCATCGGATTGATCCCACATGCAAAGTGAGTTTTCTGCCTAAATTCGAAATCCCCGAAATTGATTAATAATGCGGCCAAATAAAGCTAAAAAACTGAACGTTTTGCAAATTTTGCATTGTTCCAGAACCCGAAAGTTCCTGAACCGAAGATGTATGTTGATGTGCATGAGAAT</canonical>
            <polymorphic>AAAGTATACAAAAACTCATTCTTCAGTTGATTTTTGGCCAGTTTGATCATTTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATTGGTACTATACATGAGAGAGTTCGGATAACTTGAGCAATTTTTATAAACATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATGGCTRAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAGACTCACAGCTCACAGCGTCACATTTGACACATTGAGATTTTCAAAGCCATGAAAACTGATTATTTAGTAAACCATACCAAAACTTATAAAATGAACAAGTTTAATAGATAAGTTTTGTTGTTAGAAAGACTACTAAAATTTGGAAAACATTTTCTTTAAAAAATCTCTTTTCCAGCTGGCAGCTGACCGCACTCTGGATCGCTGGGTTCATGTTCCGCTACTACGTGCTTGTCCCATGCAGAATTGCTCTGTTCGTCATTGCAATCGTACTGATGATCGTTTCAACATCTATCATCGGATTGATCCCACATGCAAAGTGAGTTTTCTGCCTAAATTCGAAATCCCCGAAATTGATTAATAATGCGGCCAAATAAAGCTAAAAAACTGAACGTTTTGCAAATTTTGCATTGTTCCAGAACCCGAAAGTTCCTGAACCGAAGATGTATGTTGATGTGCATGAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGATATTGCGAGCTAAATTAC</pcr_primer_p1>
		<pcr_primer_p2>ATAATCAGTTTTCATGGCTTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAGACTCACAGCTCACAGCGTCACATTTGACACATTGAGATTTTCAAAGCCATGAAAACTGATTAT</canonical_amplicon>
		<polymorphic_amplicon>CATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATGGCTRAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAGACTCACAGCTCACAGCGTCACATTTGACACATTGAGATTTTCAAAGCCATGAAAACTGATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14481</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>223693</contig_pos>
        <strand>+</strand>
        <context>CACAGCTCAC[A/T]GWGTCACATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAGACTCACAGCTCAC</left_flank>
        <right_flank>GCGTCACATTTGACACATTGAGATTTTCAAAGCCATGAAAACTGATTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATTGGTACTATACATGAGAGAGTTCGGATAACTTGAGCAATTTTTATAAACATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAGACTCACAGCTCACAGCGTCACATTTGACACATTGAGATTTTCAAAGCCATGAAAACTGATTATTTAGTAAACCATACCAAAACTTATAAAATGAACAAGTTTAATAGATAAGTTTTGTTGTTAGAAAGACTACTAAAATTTGGAAAACATTTTCTTTAAAAAATCTCTTTTCCAGCTGGCAGCTGACCGCACTCTGGATCGCTGGGTTCATGTTCCGCTACTACGTGCTTGTCCCATGCAGAATTGCTCTGTTCGTCATTGCAATCGTACTGATGATCGTTTCAACATCTATCATCGGATTGATCCCACATGCAAAGTGAGTTTTCTGCCTAAATTCGAAATCCCCGAAATTGATTAATAATGCGGCCAAATAAAGCTAAAAAACTGAACGTTTTGCAAATTTTGCATTGTTCCAGAACCCGAAAGTTCCTGAACCGAAGATGTATGTTGATGTGCATGAGAATCTACTCTCGCGCATTCTCAAGTGTTATTCGTTTCCACGATAAAGAGAATC</canonical>
            <polymorphic>TTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATTGGTACTATACATGAGAGAGTTCGGATAACTTGAGCAATTTTTATAAACATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAGACTCACAGCTCACWGCGTCACATTTGACACATTGAGATTTTCAAAGCCATGAAAACTGATTATTTAGTAAACCATACCAAAACTTATAAAATGAACAAGTTTAATAGATAAGTTTTGTTGTTAGAAAGACTACTAAAATTTGGAAAACATTTTCTTTAAAAAATCTCTTTTCCAGCTGGCAGCTGACCGCACTCTGGATCGCTGGGTTCATGTTCCGCTACTACGTGCTTGTCCCATGCAGAATTGCTCTGTTCGTCATTGCAATCGTACTGATGATCGTTTCAACATCTATCATCGGATTGATCCCACATGCAAAGTGAGTTTTCTGCCTAAATTCGAAATCCCCGAAATTGATTAATAATGCGGCCAAATAAAGCTAAAAAACTGAACGTTTTGCAAATTTTGCATTGTTCCAGAACCCGAAAGTTCCTGAACCGAAGATGTATGTTGATGTGCATGAGAATCTACTCTCGCGCATTCTCAAGTGTTATTCGTTTCCACGATAAAGAGAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATCGCAACCTTACAATATCTC</pcr_primer_p1>
		<pcr_primer_p2>TGTTCATTTTATAAGTTTTGGTATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAGACTCACAGCTCACAGCGTCACATTTGACACATTGAGATTTTCAAAGCCATGAAAACTGATTATTTAGTAAACCATACCAAAACTTATAAAATGAACA</canonical_amplicon>
		<polymorphic_amplicon>TTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAGACTCACAGCTCACWGCGTCACATTTGACACATTGAGATTTTCAAAGCCATGAAAACTGATTATTTAGTAAACCATACCAAAACTTATAAAATGAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14483</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>224971</contig_pos>
        <strand>+</strand>
        <context>TTGCTATCAA[C/T]TGGATAACAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATAAAAGGAAGCTCTCAATTTTGGAAAAACCGAAAGCATTTGCTATCAA</left_flank>
        <right_flank>TGGATAACATGTCGAAACGAGCTGGTAACAGCTTCTTTGAGCCTCAATAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAGCTACCGATCATCATCTTCCCCGAGGGAACATGCATCAATAACACTTCCGTGATGATGTTCAAAAAGGGATCATTTGAGATCGGCTCCACAATCTACCCAATCGCTGTCAAATACGATACCCGTCTCACTGATGCCTTCTGGAACAGCAGTGCTCAATCTTACGGAAGATATTTGTGGAGTATGATGACTTCTTGGGCGATCATTTGTGACGTTTGGTATCTGCCACCAATGACAAGAGGAGATGGTGAAGATTCTATTTCGTTTGCAAAGAGAGTGAAGCGAGCAATTGCTAAAAAGGGAGGATTGATTGATTTGGAGTGGGATGGAGCGTTGAAGAGAGAACGGGTGAGTATTTAGCTTGGAAAAAAAGAACAGTTTCGAGAAAACGTGCATTCTAATTTTTATCTTGGTGGAGCTATTAACTTGTTTTCAACCAGTAGAAAAATATAAAAGGAAGCTCTCAATTTTGGAAAAACCGAAAGCATTTGCTATCAATTGGATAACATGTCGAAACGAGCTGGTAACAGCTTCTTTGAGCCTCAATATTTTCGGAACAATTGAATATGATTTGATGGAAATCGAGAAGAAGTTTTTTAAATATGATTTTTTAAAATGAAAAACTGTACTTTACATAAAAGGTGTAGTCAGGAATGTTCGAAATCGCCTTTTCGGGTTGTATCGGGATATCCAAAAATTCTGGTTTGTTTTATTTCGGAAATTCAGAATTTTGAAATATTCCGATTTTGAAAATTTCGAAATCTCAGAATCATCGGAATATTCCGATTTTTGTAAAAAAAAAACCACCCATTCAAAAGTTTTTGGAATTTTCGAAATTTGGAATTCTGTTCCGAACATCCCTGGTTCTAGACCATGAAGTTGTTGAGGCGAGAAAAATCAACCAAAAATATTTTTCCGCTTTCTACTTGGCTAGTGACATTACATATGTGAAGGACAGATTTTCAAACAGTAACATCTTGTAGTACTGACCGACTTGCT</canonical>
            <polymorphic>CAAGCTACCGATCATCATCTTCCCCGAGGGAACATGCATCAATAACACTTCCGTGATGATGTTCAAAAAGGGATCATTTGAGATCGGCTCCACAATCTACCCAATCGCTGTCAAATACGATACCCGTCTCACTGATGCCTTCTGGAACAGCAGTGCTCAATCTTACGGAAGATATTTGTGGAGTATGATGACTTCTTGGGCGATCATTTGTGACGTTTGGTATCTGCCACCAATGACAAGAGGAGATGGTGAAGATTCTATTTCGTTTGCAAAGAGAGTGAAGCGAGCAATTGCTAAAAAGGGAGGATTGATTGATTTGGAGTGGGATGGAGCGTTGAAGAGAGAACGGGTGAGTATTTAGCTTGGAAAAAAAGAACAGTTTCGAGAAAACGTGCATTCTAATTTTTATCTTGGTGGAGCTATTAACTTGTTTTCAACCAGTAGAAAAATATAAAAGGAAGCTCTCAATTTTGGAAAAACCGAAAGCATTTGCTATCAAYTGGATAACATGTCGAAACGAGCTGGTAACAGCTTCTTTGAGCCTCAATATTTTCGGAACAATTGAATATGATTTGATGGAAATCGAGAAGAAGTTTTTTAAATATGATTTTTTAAAATGAAAAACTGTACTTTACATAAAAGGTGTAGTCAGGAATGTTCGAAATCGCCTTTTCGGGTTGTATCGGGATATCCAAAAATTCTGGTTTGTTTTATTTCGGAAATTCAGAATTTTGAAATATTCCGATTTTGAAAATTTCGAAATCTCAGAATCATCGGAATATTCCGATTTTTGTAAAAAAAAAACCACCCATTCAAAAGTTTTTGGAATTTTCGAAATTTGGAATTCTGTTCCGAACATCCCTGGTTCTAGACCATGAAGTTGTTGAGGCGAGAAAAATCAACCAAAAATATTTTTCCGCTTTCTACTTGGCTAGTGACATTACATATGTGAAGGACAGATTTTCAAACAGTAACATCTTGTAGTACTGACCGACTTGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>441 288 209 62</canonical_bands>
                <polymorphic_bands>441 288 271</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>288 158 137 112 74 66 62 31 25 24 9 7 7</canonical_bands>
                <polymorphic_bands>288 158 137 112 93 74 66 25 24 9 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGAGAACGGGTGAGTATTTAG</pcr_primer_p1>
		<pcr_primer_p2>GATTTCCATCAAATCATATTCAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAGAGAACGGGTGAGTATTTAGCTTGGAAAAAAAGAACAGTTTCGAGAAAACGTGCATTCTAATTTTTATCTTGGTGGAGCTATTAACTTGTTTTCAACCAGTAGAAAAATATAAAAGGAAGCTCTCAATTTTGGAAAAACCGAAAGCATTTGCTATCAATTGGATAACATGTCGAAACGAGCTGGTAACAGCTTCTTTGAGCCTCAATATTTTCGGAACAATTGAATATGATTTGATGGAAATC</canonical_amplicon>
		<polymorphic_amplicon>AGAGAGAACGGGTGAGTATTTAGCTTGGAAAAAAAGAACAGTTTCGAGAAAACGTGCATTCTAATTTTTATCTTGGTGGAGCTATTAACTTGTTTTCAACCAGTAGAAAAATATAAAAGGAAGCTCTCAATTTTGGAAAAACCGAAAGCATTTGCTATCAAYTGGATAACATGTCGAAACGAGCTGGTAACAGCTTCTTTGAGCCTCAATATTTTCGGAACAATTGAATATGATTTGATGGAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14484</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>224897</contig_pos>
        <strand>+</strand>
        <context>GGAGCTATTA[A/T]CTTGTTTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACAGTTTCGAGAAAACGTGCATTCTAATTTTTATCTTGGTGGAGCTATTA</left_flank>
        <right_flank>CTTGTTTTCAACCAGTAGAAAAATATAAAAGGAAGCTCTCAATTTTGGAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGTTTTTGACTGCAGAAGTTGTTTTTCTGACTCGATCCTTTCCCAGAATGCGTGAACATGTTGAGGATGAAAACAAGCTACCGATCATCATCTTCCCCGAGGGAACATGCATCAATAACACTTCCGTGATGATGTTCAAAAAGGGATCATTTGAGATCGGCTCCACAATCTACCCAATCGCTGTCAAATACGATACCCGTCTCACTGATGCCTTCTGGAACAGCAGTGCTCAATCTTACGGAAGATATTTGTGGAGTATGATGACTTCTTGGGCGATCATTTGTGACGTTTGGTATCTGCCACCAATGACAAGAGGAGATGGTGAAGATTCTATTTCGTTTGCAAAGAGAGTGAAGCGAGCAATTGCTAAAAAGGGAGGATTGATTGATTTGGAGTGGGATGGAGCGTTGAAGAGAGAACGGGTGAGTATTTAGCTTGGAAAAAAAGAACAGTTTCGAGAAAACGTGCATTCTAATTTTTATCTTGGTGGAGCTATTAACTTGTTTTCAACCAGTAGAAAAATATAAAAGGAAGCTCTCAATTTTGGAAAAACCGAAAGCATTTGCTATCAATTGGATAACATGTCGAAACGAGCTGGTAACAGCTTCTTTGAGCCTCAATATTTTCGGAACAATTGAATATGATTTGATGGAAATCGAGAAGAAGTTTTTTAAATATGATTTTTTAAAATGAAAAACTGTACTTTACATAAAAGGTGTAGTCAGGAATGTTCGAAATCGCCTTTTCGGGTTGTATCGGGATATCCAAAAATTCTGGTTTGTTTTATTTCGGAAATTCAGAATTTTGAAATATTCCGATTTTGAAAATTTCGAAATCTCAGAATCATCGGAATATTCCGATTTTTGTAAAAAAAAAACCACCCATTCAAAAGTTTTTGGAATTTTCGAAATTTGGAATTCTGTTCCGAACATCCCTGGTTCTAGACCATGAAGTTGTTGAGGCGAGAAAAATCAACCAAAAATATTTTTCCGCTTTCTA</canonical>
            <polymorphic>GAGTTTTTGACTGCAGAAGTTGTTTTTCTGACTCGATCCTTTCCCAGAATGCGTGAACATGTTGAGGATGAAAACAAGCTACCGATCATCATCTTCCCCGAGGGAACATGCATCAATAACACTTCCGTGATGATGTTCAAAAAGGGATCATTTGAGATCGGCTCCACAATCTACCCAATCGCTGTCAAATACGATACCCGTCTCACTGATGCCTTCTGGAACAGCAGTGCTCAATCTTACGGAAGATATTTGTGGAGTATGATGACTTCTTGGGCGATCATTTGTGACGTTTGGTATCTGCCACCAATGACAAGAGGAGATGGTGAAGATTCTATTTCGTTTGCAAAGAGAGTGAAGCGAGCAATTGCTAAAAAGGGAGGATTGATTGATTTGGAGTGGGATGGAGCGTTGAAGAGAGAACGGGTGAGTATTTAGCTTGGAAAAAAAGAACAGTTTCGAGAAAACGTGCATTCTAATTTTTATCTTGGTGGAGCTATTAWCTTGTTTTCAACCAGTAGAAAAATATAAAAGGAAGCTCTCAATTTTGGAAAAACCGAAAGCATTTGCTATCAATTGGATAACATGTCGAAACGAGCTGGTAACAGCTTCTTTGAGCCTCAATATTTTCGGAACAATTGAATATGATTTGATGGAAATCGAGAAGAAGTTTTTTAAATATGATTTTTTAAAATGAAAAACTGTACTTTACATAAAAGGTGTAGTCAGGAATGTTCGAAATCGCCTTTTCGGGTTGTATCGGGATATCCAAAAATTCTGGTTTGTTTTATTTCGGAAATTCAGAATTTTGAAATATTCCGATTTTGAAAATTTCGAAATCTCAGAATCATCGGAATATTCCGATTTTTGTAAAAAAAAAACCACCCATTCAAAAGTTTTTGGAATTTTCGAAATTTGGAATTCTGTTCCGAACATCCCTGGTTCTAGACCATGAAGTTGTTGAGGCGAGAAAAATCAACCAAAAATATTTTTCCGCTTTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>497 314 175 14</canonical_bands>
                <polymorphic_bands>672 314 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGAGAACGGGTGAGTATTTAG</pcr_primer_p1>
		<pcr_primer_p2>GATTTCCATCAAATCATATTCAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAGAGAACGGGTGAGTATTTAGCTTGGAAAAAAAGAACAGTTTCGAGAAAACGTGCATTCTAATTTTTATCTTGGTGGAGCTATTAACTTGTTTTCAACCAGTAGAAAAATATAAAAGGAAGCTCTCAATTTTGGAAAAACCGAAAGCATTTGCTATCAATTGGATAACATGTCGAAACGAGCTGGTAACAGCTTCTTTGAGCCTCAATATTTTCGGAACAATTGAATATGATTTGATGGAAATC</canonical_amplicon>
		<polymorphic_amplicon>AGAGAGAACGGGTGAGTATTTAGCTTGGAAAAAAAGAACAGTTTCGAGAAAACGTGCATTCTAATTTTTATCTTGGTGGAGCTATTAWCTTGTTTTCAACCAGTAGAAAAATATAAAAGGAAGCTCTCAATTTTGGAAAAACCGAAAGCATTTGCTATCAATTGGATAACATGTCGAAACGAGCTGGTAACAGCTTCTTTGAGCCTCAATATTTTCGGAACAATTGAATATGATTTGATGGAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14486</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>228359</contig_pos>
        <strand>+</strand>
        <context>ACAATGATAT[A/G]AACCAAATAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGGAAACAAAGTAGAATTTCAACAAAGATTGAGACGTTAACAATGATAT</left_flank>
        <right_flank>AACCAAATATCAGAGCCTCACTCAGATTAGAAAATTTCAAAGCCTGGAGT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAGAATTATTTTTCCTAAATTTGGAAGCTGGCCAAAACTGTCCGGGCCTTCCGGGCCGGGCCGGGCCTTGACCAACTTTTTGAAAGCCCGGCACGGCCCGTTGCAAGTATGGATATATCTATACAAACGAACCCCACAAATTGTCAGTTTCATCAAGTCGATCTTCCGAAATTTTCGAAAAACTTCGGAATTCAACAGAATTCATATTTTTGAAAGTCCCATTACAAAGTATCCCTTTTGGAATAGAAACAGTATCTAGACTGGCCGGAAAAACTAAAACATATTTCTATTTTTGTGAAAATATTCAGAAAAAAAAAGTGAAAAATTGTTACTTCAACGATAACAACCAATGCCGAGAATTTTCTGGAAACGATTGGGCTTCAGAAAAATTCCGGCAGCTCAAAAACACAATGGCGTTTTTTCAAATTTTCCAGAACTTTACCAGGAGGAAACAAAGTAGAATTTCAACAAAGATTGAGACGTTAACAATGATATAAACCAAATATCAGAGCCTCACTCAGATTAGAAAATTTCAAAGCCTGGAGTCCTGGAGATCATGATCTACCGATATGAGAAGTGGCTTTATAAACTTTCAACAGTTAAAAATGACAATTTTCATACTTTTGAAGATAGCTCCAATAGTTTTCCACATTGCAGGACAGAAATCGCTTACTAAATGTATTTTATTTGTTGTCTAAAATCCGATTTTTCAATTTTTAGAATGATATCTCTAGCGATTCACAAGTTGTGACCTGAAACACAAGTGACCGTATGAACTTGAAACGCACAGTTTGACAAGTTTTACGTTTTGTGAACGTGCTTCCAAATTTTATTCCGAAGTTTCGTACTTGTCTGAAATGGGAGAATCCTTCTTTTTTGCTTGAATTTAAAATCATAATACAAACATTTTATTAACACTAAACATTACTTTTTTCCTATGGGAACATGAAAGCAGAAGAGGTCAAATGGGCATACTTGGTGATAATGCCAGCATTC</canonical>
            <polymorphic>AAAAAAGAATTATTTTTCCTAAATTTGGAAGCTGGCCAAAACTGTCCGGGCCTTCCGGGCCGGGCCGGGCCTTGACCAACTTTTTGAAAGCCCGGCACGGCCCGTTGCAAGTATGGATATATCTATACAAACGAACCCCACAAATTGTCAGTTTCATCAAGTCGATCTTCCGAAATTTTCGAAAAACTTCGGAATTCAACAGAATTCATATTTTTGAAAGTCCCATTACAAAGTATCCCTTTTGGAATAGAAACAGTATCTAGACTGGCCGGAAAAACTAAAACATATTTCTATTTTTGTGAAAATATTCAGAAAAAAAAAGTGAAAAATTGTTACTTCAACGATAACAACCAATGCCGAGAATTTTCTGGAAACGATTGGGCTTCAGAAAAATTCCGGCAGCTCAAAAACACAATGGCGTTTTTTCAAATTTTCCAGAACTTTACCAGGAGGAAACAAAGTAGAATTTCAACAAAGATTGAGACGTTAACAATGATATRAACCAAATATCAGAGCCTCACTCAGATTAGAAAATTTCAAAGCCTGGAGTCCTGGAGATCATGATCTACCGATATGAGAAGTGGCTTTATAAACTTTCAACAGTTAAAAATGACAATTTTCATACTTTTGAAGATAGCTCCAATAGTTTTCCACATTGCAGGACAGAAATCGCTTACTAAATGTATTTTATTTGTTGTCTAAAATCCGATTTTTCAATTTTTAGAATGATATCTCTAGCGATTCACAAGTTGTGACCTGAAACACAAGTGACCGTATGAACTTGAAACGCACAGTTTGACAAGTTTTACGTTTTGTGAACGTGCTTCCAAATTTTATTCCGAAGTTTCGTACTTGTCTGAAATGGGAGAATCCTTCTTTTTTGCTTGAATTTAAAATCATAATACAAACATTTTATTAACACTAAACATTACTTTTTTCCTATGGGAACATGAAAGCAGAAGAGGTCAAATGGGCATACTTGGTGATAATGCCAGCATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTACCAGGAGGAAACAAAGTA</pcr_primer_p1>
		<pcr_primer_p2>CAAAACGTAAAACTTGTCAAACT</pcr_primer_p2>
		<pcr_amplicon_size>374</pcr_amplicon_size>
		<canonical_amplicon>TTTACCAGGAGGAAACAAAGTAGAATTTCAACAAAGATTGAGACGTTAACAATGATATAAACCAAATATCAGAGCCTCACTCAGATTAGAAAATTTCAAAGCCTGGAGTCCTGGAGATCATGATCTACCGATATGAGAAGTGGCTTTATAAACTTTCAACAGTTAAAAATGACAATTTTCATACTTTTGAAGATAGCTCCAATAGTTTTCCACATTGCAGGACAGAAATCGCTTACTAAATGTATTTTATTTGTTGTCTAAAATCCGATTTTTCAATTTTTAGAATGATATCTCTAGCGATTCACAAGTTGTGACCTGAAACACAAGTGACCGTATGAACTTGAAACGCACAGTTTGACAAGTTTTACGTTTTG</canonical_amplicon>
		<polymorphic_amplicon>TTTACCAGGAGGAAACAAAGTAGAATTTCAACAAAGATTGAGACGTTAACAATGATATRAACCAAATATCAGAGCCTCACTCAGATTAGAAAATTTCAAAGCCTGGAGTCCTGGAGATCATGATCTACCGATATGAGAAGTGGCTTTATAAACTTTCAACAGTTAAAAATGACAATTTTCATACTTTTGAAGATAGCTCCAATAGTTTTCCACATTGCAGGACAGAAATCGCTTACTAAATGTATTTTATTTGTTGTCTAAAATCCGATTTTTCAATTTTTAGAATGATATCTCTAGCGATTCACAAGTTGTGACCTGAAACACAAGTGACCGTATGAACTTGAAACGCACAGTTTGACAAGTTTTACGTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14487</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>228323</contig_pos>
        <strand>+</strand>
        <context>AAACAAAGTA[C/G]AATTTCAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATGGCGTTTTTTCAAATTTTCCAGAACTTTACCAGGAGGAAACAAAGTA</left_flank>
        <right_flank>AATTTCAACAAAGATTGAGACGTTAACAATGATATAAACCAAATATCAGA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTCAAAATTAGATGCTAATTCAACGTTTTTCCAAAAAAAAAGAATTATTTTTCCTAAATTTGGAAGCTGGCCAAAACTGTCCGGGCCTTCCGGGCCGGGCCGGGCCTTGACCAACTTTTTGAAAGCCCGGCACGGCCCGTTGCAAGTATGGATATATCTATACAAACGAACCCCACAAATTGTCAGTTTCATCAAGTCGATCTTCCGAAATTTTCGAAAAACTTCGGAATTCAACAGAATTCATATTTTTGAAAGTCCCATTACAAAGTATCCCTTTTGGAATAGAAACAGTATCTAGACTGGCCGGAAAAACTAAAACATATTTCTATTTTTGTGAAAATATTCAGAAAAAAAAAGTGAAAAATTGTTACTTCAACGATAACAACCAATGCCGAGAATTTTCTGGAAACGATTGGGCTTCAGAAAAATTCCGGCAGCTCAAAAACACAATGGCGTTTTTTCAAATTTTCCAGAACTTTACCAGGAGGAAACAAAGTAGAATTTCAACAAAGATTGAGACGTTAACAATGATATAAACCAAATATCAGAGCCTCACTCAGATTAGAAAATTTCAAAGCCTGGAGTCCTGGAGATCATGATCTACCGATATGAGAAGTGGCTTTATAAACTTTCAACAGTTAAAAATGACAATTTTCATACTTTTGAAGATAGCTCCAATAGTTTTCCACATTGCAGGACAGAAATCGCTTACTAAATGTATTTTATTTGTTGTCTAAAATCCGATTTTTCAATTTTTAGAATGATATCTCTAGCGATTCACAAGTTGTGACCTGAAACACAAGTGACCGTATGAACTTGAAACGCACAGTTTGACAAGTTTTACGTTTTGTGAACGTGCTTCCAAATTTTATTCCGAAGTTTCGTACTTGTCTGAAATGGGAGAATCCTTCTTTTTTGCTTGAATTTAAAATCATAATACAAACATTTTATTAACACTAAACATTACTTTTTTCCTATGGGAACATGAAAGCAGAAGAG</canonical>
            <polymorphic>GCTCAAAATTAGATGCTAATTCAACGTTTTTCCAAAAAAAAAGAATTATTTTTCCTAAATTTGGAAGCTGGCCAAAACTGTCCGGGCCTTCCGGGCCGGGCCGGGCCTTGACCAACTTTTTGAAAGCCCGGCACGGCCCGTTGCAAGTATGGATATATCTATACAAACGAACCCCACAAATTGTCAGTTTCATCAAGTCGATCTTCCGAAATTTTCGAAAAACTTCGGAATTCAACAGAATTCATATTTTTGAAAGTCCCATTACAAAGTATCCCTTTTGGAATAGAAACAGTATCTAGACTGGCCGGAAAAACTAAAACATATTTCTATTTTTGTGAAAATATTCAGAAAAAAAAAGTGAAAAATTGTTACTTCAACGATAACAACCAATGCCGAGAATTTTCTGGAAACGATTGGGCTTCAGAAAAATTCCGGCAGCTCAAAAACACAATGGCGTTTTTTCAAATTTTCCAGAACTTTACCAGGAGGAAACAAAGTASAATTTCAACAAAGATTGAGACGTTAACAATGATATAAACCAAATATCAGAGCCTCACTCAGATTAGAAAATTTCAAAGCCTGGAGTCCTGGAGATCATGATCTACCGATATGAGAAGTGGCTTTATAAACTTTCAACAGTTAAAAATGACAATTTTCATACTTTTGAAGATAGCTCCAATAGTTTTCCACATTGCAGGACAGAAATCGCTTACTAAATGTATTTTATTTGTTGTCTAAAATCCGATTTTTCAATTTTTAGAATGATATCTCTAGCGATTCACAAGTTGTGACCTGAAACACAAGTGACCGTATGAACTTGAAACGCACAGTTTGACAAGTTTTACGTTTTGTGAACGTGCTTCCAAATTTTATTCCGAAGTTTCGTACTTGTCTGAAATGGGAGAATCCTTCTTTTTTGCTTGAATTTAAAATCATAATACAAACATTTTATTAACACTAAACATTACTTTTTTCCTATGGGAACATGAAAGCAGAAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>297 159 152 77 68 58 57 37 36 30 19 10</canonical_bands>
                <polymorphic_bands>297 159 152 104 77 58 57 37 30 19 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCGGAAAAACTAAAACATA</pcr_primer_p1>
		<pcr_primer_p2>TGAGTGAGGCTCTGATATTTG</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>GCCGGAAAAACTAAAACATATTTCTATTTTTGTGAAAATATTCAGAAAAAAAAAGTGAAAAATTGTTACTTCAACGATAACAACCAATGCCGAGAATTTTCTGGAAACGATTGGGCTTCAGAAAAATTCCGGCAGCTCAAAAACACAATGGCGTTTTTTCAAATTTTCCAGAACTTTACCAGGAGGAAACAAAGTAGAATTTCAACAAAGATTGAGACGTTAACAATGATATAAACCAAATATCAGAGCCTCACTCA</canonical_amplicon>
		<polymorphic_amplicon>GCCGGAAAAACTAAAACATATTTCTATTTTTGTGAAAATATTCAGAAAAAAAAAGTGAAAAATTGTTACTTCAACGATAACAACCAATGCCGAGAATTTTCTGGAAACGATTGGGCTTCAGAAAAATTCCGGCAGCTCAAAAACACAATGGCGTTTTTTCAAATTTTCCAGAACTTTACCAGGAGGAAACAAAGTASAATTTCAACAAAGATTGAGACGTTAACAATGATATAAACCAAATATCAGAGCCTCACTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14488</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>228218</contig_pos>
        <strand>+</strand>
        <context>AACCAATGCC[A/G]AGAATTTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAGAAAAAAAAAGTGAAAAATTGTTACTTCAACGATAACAACCAATGCC</left_flank>
        <right_flank>AGAATTTTCTGGAAACGATTGGGCTTCAGAAAAATTCCGGCAGCTCAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATGCAATTTTCAGTCCGATCCCACATCCGGAAAAAAGTAAGCAAACATTTTTTATTTTTATAATTTTGTTTAAGCATTGAAAATTTGATACTTACAATTCAGCTCAAAATTAGATGCTAATTCAACGTTTTTCCAAAAAAAAAGAATTATTTTTCCTAAATTTGGAAGCTGGCCAAAACTGTCCGGGCCTTCCGGGCCGGGCCGGGCCTTGACCAACTTTTTGAAAGCCCGGCACGGCCCGTTGCAAGTATGGATATATCTATACAAACGAACCCCACAAATTGTCAGTTTCATCAAGTCGATCTTCCGAAATTTTCGAAAAACTTCGGAATTCAACAGAATTCATATTTTTGAAAGTCCCATTACAAAGTATCCCTTTTGGAATAGAAACAGTATCTAGACTGGCCGGAAAAACTAAAACATATTTCTATTTTTGTGAAAATATTCAGAAAAAAAAAGTGAAAAATTGTTACTTCAACGATAACAACCAATGCCGAGAATTTTCTGGAAACGATTGGGCTTCAGAAAAATTCCGGCAGCTCAAAAACACAATGGCGTTTTTTCAAATTTTCCAGAACTTTACCAGGAGGAAACAAAGTAGAATTTCAACAAAGATTGAGACGTTAACAATGATATAAACCAAATATCAGAGCCTCACTCAGATTAGAAAATTTCAAAGCCTGGAGTCCTGGAGATCATGATCTACCGATATGAGAAGTGGCTTTATAAACTTTCAACAGTTAAAAATGACAATTTTCATACTTTTGAAGATAGCTCCAATAGTTTTCCACATTGCAGGACAGAAATCGCTTACTAAATGTATTTTATTTGTTGTCTAAAATCCGATTTTTCAATTTTTAGAATGATATCTCTAGCGATTCACAAGTTGTGACCTGAAACACAAGTGACCGTATGAACTTGAAACGCACAGTTTGACAAGTTTTACGTTTTGTGAACGTGCTTCCAAATTTTATTCCGAAGTTTCGTACTTGTCTG</canonical>
            <polymorphic>AAAAATGCAATTTTCAGTCCGATCCCACATCCGGAAAAAAGTAAGCAAACATTTTTTATTTTTATAATTTTGTTTAAGCATTGAAAATTTGATACTTACAATTCAGCTCAAAATTAGATGCTAATTCAACGTTTTTCCAAAAAAAAAGAATTATTTTTCCTAAATTTGGAAGCTGGCCAAAACTGTCCGGGCCTTCCGGGCCGGGCCGGGCCTTGACCAACTTTTTGAAAGCCCGGCACGGCCCGTTGCAAGTATGGATATATCTATACAAACGAACCCCACAAATTGTCAGTTTCATCAAGTCGATCTTCCGAAATTTTCGAAAAACTTCGGAATTCAACAGAATTCATATTTTTGAAAGTCCCATTACAAAGTATCCCTTTTGGAATAGAAACAGTATCTAGACTGGCCGGAAAAACTAAAACATATTTCTATTTTTGTGAAAATATTCAGAAAAAAAAAGTGAAAAATTGTTACTTCAACGATAACAACCAATGCCRAGAATTTTCTGGAAACGATTGGGCTTCAGAAAAATTCCGGCAGCTCAAAAACACAATGGCGTTTTTTCAAATTTTCCAGAACTTTACCAGGAGGAAACAAAGTAGAATTTCAACAAAGATTGAGACGTTAACAATGATATAAACCAAATATCAGAGCCTCACTCAGATTAGAAAATTTCAAAGCCTGGAGTCCTGGAGATCATGATCTACCGATATGAGAAGTGGCTTTATAAACTTTCAACAGTTAAAAATGACAATTTTCATACTTTTGAAGATAGCTCCAATAGTTTTCCACATTGCAGGACAGAAATCGCTTACTAAATGTATTTTATTTGTTGTCTAAAATCCGATTTTTCAATTTTTAGAATGATATCTCTAGCGATTCACAAGTTGTGACCTGAAACACAAGTGACCGTATGAACTTGAAACGCACAGTTTGACAAGTTTTACGTTTTGTGAACGTGCTTCCAAATTTTATTCCGAAGTTTCGTACTTGTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAGTCCCATTACAAAGTATC</pcr_primer_p1>
		<pcr_primer_p2>TACTTTGTTTCCTCCTGGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAAAGTCCCATTACAAAGTATCCCTTTTGGAATAGAAACAGTATCTAGACTGGCCGGAAAAACTAAAACATATTTCTATTTTTGTGAAAATATTCAGAAAAAAAAAGTGAAAAATTGTTACTTCAACGATAACAACCAATGCCGAGAATTTTCTGGAAACGATTGGGCTTCAGAAAAATTCCGGCAGCTCAAAAACACAATGGCGTTTTTTCAAATTTTCCAGAACTTTACCAGGAGGAAACAAAGTA</canonical_amplicon>
		<polymorphic_amplicon>TGAAAGTCCCATTACAAAGTATCCCTTTTGGAATAGAAACAGTATCTAGACTGGCCGGAAAAACTAAAACATATTTCTATTTTTGTGAAAATATTCAGAAAAAAAAAGTGAAAAATTGTTACTTCAACGATAACAACCAATGCCRAGAATTTTCTGGAAACGATTGGGCTTCAGAAAAATTCCGGCAGCTCAAAAACACAATGGCGTTTTTTCAAATTTTCCAGAACTTTACCAGGAGGAAACAAAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14489</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>228173</contig_pos>
        <strand></strand>
        <context>AAWATTCAGA[A/G]AAAAAAAGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTGGCCGGAAAAACTAAAACATATTTCTATTTTTGTGAAAATATTCAGA</left_flank>
        <right_flank>AAAAAAAGTGAAAAATTGTTACTTCAACGATAACAACCAATGCCGAGAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACAAAAACAATTAGTTTTTGAGAAAAAAGTGTTATTTTACTTCAAAAATGCAATTTTCAGTCCGATCCCACATCCGGAAAAAAGTAAGCAAACATTTTTTATTTTTATAATTTTGTTTAAGCATTGAAAATTTGATACTTACAATTCAGCTCAAAATTAGATGCTAATTCAACGTTTTTCCAAAAAAAAAGAATTATTTTTCCTAAATTTGGAAGCTGGCCAAAACTGTCCGGGCCTTCCGGGCCGGGCCGGGCCTTGACCAACTTTTTGAAAGCCCGGCACGGCCCGTTGCAAGTATGGATATATCTATACAAACGAACCCCACAAATTGTCAGTTTCATCAAGTCGATCTTCCGAAATTTTCGAAAAACTTCGGAATTCAACAGAATTCATATTTTTGAAAGTCCCATTACAAAGTATCCCTTTTGGAATAGAAACAGTATCTAGACTGGCCGGAAAAACTAAAACATATTTCTATTTTTGTGAAAATATTCAGAAAAAAAAAGTGAAAAATTGTTACTTCAACGATAACAACCAATGCCGAGAATTTTCTGGAAACGATTGGGCTTCAGAAAAATTCCGGCAGCTCAAAAACACAATGGCGTTTTTTCAAATTTTCCAGAACTTTACCAGGAGGAAACAAAGTAGAATTTCAACAAAGATTGAGACGTTAACAATGATATAAACCAAATATCAGAGCCTCACTCAGATTAGAAAATTTCAAAGCCTGGAGTCCTGGAGATCATGATCTACCGATATGAGAAGTGGCTTTATAAACTTTCAACAGTTAAAAATGACAATTTTCATACTTTTGAAGATAGCTCCAATAGTTTTCCACATTGCAGGACAGAAATCGCTTACTAAATGTATTTTATTTGTTGTCTAAAATCCGATTTTTCAATTTTTAGAATGATATCTCTAGCGATTCACAAGTTGTGACCTGAAACACAAGTGACCGTATGAACTTGAAACGCACAGTTTGACAAGTTTTACGTTTT</canonical>
            <polymorphic>AAACAAAAACAATTAGTTTTTGAGAAAAAAGTGTTATTTTACTTCAAAAATGCAATTTTCAGTCCGATCCCACATCCGGAAAAAAGTAAGCAAACATTTTTTATTTTTATAATTTTGTTTAAGCATTGAAAATTTGATACTTACAATTCAGCTCAAAATTAGATGCTAATTCAACGTTTTTCCAAAAAAAAAGAATTATTTTTCCTAAATTTGGAAGCTGGCCAAAACTGTCCGGGCCTTCCGGGCCGGGCCGGGCCTTGACCAACTTTTTGAAAGCCCGGCACGGCCCGTTGCAAGTATGGATATATCTATACAAACGAACCCCACAAATTGTCAGTTTCATCAAGTCGATCTTCCGAAATTTTCGAAAAACTTCGGAATTCAACAGAATTCATATTTTTGAAAGTCCCATTACAAAGTATCCCTTTTGGAATAGAAACAGTATCTAGACTGGCCGGAAAAACTAAAACATATTTCTATTTTTGTGAAAATATTCAGARAAAAAAAGTGAAAAATTGTTACTTCAACGATAACAACCAATGCCGAGAATTTTCTGGAAACGATTGGGCTTCAGAAAAATTCCGGCAGCTCAAAAACACAATGGCGTTTTTTCAAATTTTCCAGAACTTTACCAGGAGGAAACAAAGTAGAATTTCAACAAAGATTGAGACGTTAACAATGATATAAACCAAATATCAGAGCCTCACTCAGATTAGAAAATTTCAAAGCCTGGAGTCCTGGAGATCATGATCTACCGATATGAGAAGTGGCTTTATAAACTTTCAACAGTTAAAAATGACAATTTTCATACTTTTGAAGATAGCTCCAATAGTTTTCCACATTGCAGGACAGAAATCGCTTACTAAATGTATTTTATTTGTTGTCTAAAATCCGATTTTTCAATTTTTAGAATGATATCTCTAGCGATTCACAAGTTGTGACCTGAAACACAAGTGACCGTATGAACTTGAAACGCACAGTTTGACAAGTTTTACGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAGTCCCATTACAAAGTATC</pcr_primer_p1>
		<pcr_primer_p2>TACTTTGTTTCCTCCTGGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAAAGTCCCATTACAAAGTATCCCTTTTGGAATAGAAACAGTATCTAGACTGGCCGGAAAAACTAAAACATATTTCTATTTTTGTGAAAATATTCAGAAAAAAAAAGTGAAAAATTGTTACTTCAACGATAACAACCAATGCCGAGAATTTTCTGGAAACGATTGGGCTTCAGAAAAATTCCGGCAGCTCAAAAACACAATGGCGTTTTTTCAAATTTTCCAGAACTTTACCAGGAGGAAACAAAGTA</canonical_amplicon>
		<polymorphic_amplicon>TGAAAGTCCCATTACAAAGTATCCCTTTTGGAATAGAAACAGTATCTAGACTGGCCGGAAAAACTAAAACATATTTCTATTTTTGTGAAAATATTCAGARAAAAAAAGTGAAAAATTGTTACTTCAACGATAACAACCAATGCCGAGAATTTTCTGGAAACGATTGGGCTTCAGAAAAATTCCGGCAGCTCAAAAACACAATGGCGTTTTTTCAAATTTTCCAGAACTTTACCAGGAGGAAACAAAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14490</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>228165</contig_pos>
        <strand>+</strand>
        <context>TTTGTGAAAA[A/T]ATTCAGARAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTATCTAGACTGGCCGGAAAAACTAAAACATATTTCTATTTTTGTGAAAA</left_flank>
        <right_flank>ATTCAGAAAAAAAAAGTGAAAAATTGTTACTTCAACGATAACAACCAATG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTTTAAACAAAAACAATTAGTTTTTGAGAAAAAAGTGTTATTTTACTTCAAAAATGCAATTTTCAGTCCGATCCCACATCCGGAAAAAAGTAAGCAAACATTTTTTATTTTTATAATTTTGTTTAAGCATTGAAAATTTGATACTTACAATTCAGCTCAAAATTAGATGCTAATTCAACGTTTTTCCAAAAAAAAAGAATTATTTTTCCTAAATTTGGAAGCTGGCCAAAACTGTCCGGGCCTTCCGGGCCGGGCCGGGCCTTGACCAACTTTTTGAAAGCCCGGCACGGCCCGTTGCAAGTATGGATATATCTATACAAACGAACCCCACAAATTGTCAGTTTCATCAAGTCGATCTTCCGAAATTTTCGAAAAACTTCGGAATTCAACAGAATTCATATTTTTGAAAGTCCCATTACAAAGTATCCCTTTTGGAATAGAAACAGTATCTAGACTGGCCGGAAAAACTAAAACATATTTCTATTTTTGTGAAAATATTCAGAAAAAAAAAGTGAAAAATTGTTACTTCAACGATAACAACCAATGCCGAGAATTTTCTGGAAACGATTGGGCTTCAGAAAAATTCCGGCAGCTCAAAAACACAATGGCGTTTTTTCAAATTTTCCAGAACTTTACCAGGAGGAAACAAAGTAGAATTTCAACAAAGATTGAGACGTTAACAATGATATAAACCAAATATCAGAGCCTCACTCAGATTAGAAAATTTCAAAGCCTGGAGTCCTGGAGATCATGATCTACCGATATGAGAAGTGGCTTTATAAACTTTCAACAGTTAAAAATGACAATTTTCATACTTTTGAAGATAGCTCCAATAGTTTTCCACATTGCAGGACAGAAATCGCTTACTAAATGTATTTTATTTGTTGTCTAAAATCCGATTTTTCAATTTTTAGAATGATATCTCTAGCGATTCACAAGTTGTGACCTGAAACACAAGTGACCGTATGAACTTGAAACGCACAGTTTGACAAGTTT</canonical>
            <polymorphic>ATTTTTTTAAACAAAAACAATTAGTTTTTGAGAAAAAAGTGTTATTTTACTTCAAAAATGCAATTTTCAGTCCGATCCCACATCCGGAAAAAAGTAAGCAAACATTTTTTATTTTTATAATTTTGTTTAAGCATTGAAAATTTGATACTTACAATTCAGCTCAAAATTAGATGCTAATTCAACGTTTTTCCAAAAAAAAAGAATTATTTTTCCTAAATTTGGAAGCTGGCCAAAACTGTCCGGGCCTTCCGGGCCGGGCCGGGCCTTGACCAACTTTTTGAAAGCCCGGCACGGCCCGTTGCAAGTATGGATATATCTATACAAACGAACCCCACAAATTGTCAGTTTCATCAAGTCGATCTTCCGAAATTTTCGAAAAACTTCGGAATTCAACAGAATTCATATTTTTGAAAGTCCCATTACAAAGTATCCCTTTTGGAATAGAAACAGTATCTAGACTGGCCGGAAAAACTAAAACATATTTCTATTTTTGTGAAAAWATTCAGAAAAAAAAAGTGAAAAATTGTTACTTCAACGATAACAACCAATGCCGAGAATTTTCTGGAAACGATTGGGCTTCAGAAAAATTCCGGCAGCTCAAAAACACAATGGCGTTTTTTCAAATTTTCCAGAACTTTACCAGGAGGAAACAAAGTAGAATTTCAACAAAGATTGAGACGTTAACAATGATATAAACCAAATATCAGAGCCTCACTCAGATTAGAAAATTTCAAAGCCTGGAGTCCTGGAGATCATGATCTACCGATATGAGAAGTGGCTTTATAAACTTTCAACAGTTAAAAATGACAATTTTCATACTTTTGAAGATAGCTCCAATAGTTTTCCACATTGCAGGACAGAAATCGCTTACTAAATGTATTTTATTTGTTGTCTAAAATCCGATTTTTCAATTTTTAGAATGATATCTCTAGCGATTCACAAGTTGTGACCTGAAACACAAGTGACCGTATGAACTTGAAACGCACAGTTTGACAAGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAAGTCCCATTACAAAGTATC</pcr_primer_p1>
		<pcr_primer_p2>TACTTTGTTTCCTCCTGGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAAAGTCCCATTACAAAGTATCCCTTTTGGAATAGAAACAGTATCTAGACTGGCCGGAAAAACTAAAACATATTTCTATTTTTGTGAAAATATTCAGAAAAAAAAAGTGAAAAATTGTTACTTCAACGATAACAACCAATGCCGAGAATTTTCTGGAAACGATTGGGCTTCAGAAAAATTCCGGCAGCTCAAAAACACAATGGCGTTTTTTCAAATTTTCCAGAACTTTACCAGGAGGAAACAAAGTA</canonical_amplicon>
		<polymorphic_amplicon>TGAAAGTCCCATTACAAAGTATCCCTTTTGGAATAGAAACAGTATCTAGACTGGCCGGAAAAACTAAAACATATTTCTATTTTTGTGAAAAWATTCAGAAAAAAAAAGTGAAAAATTGTTACTTCAACGATAACAACCAATGCCGAGAATTTTCTGGAAACGATTGGGCTTCAGAAAAATTCCGGCAGCTCAAAAACACAATGGCGTTTTTTCAAATTTTCCAGAACTTTACCAGGAGGAAACAAAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14491</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>228030</contig_pos>
        <strand>+</strand>
        <context>GTCGATCTTC[C/T]GAAATTTTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTATACAAACGAACCCCACAAATTGTCAGTTTCATCAAGTCGATCTTC</left_flank>
        <right_flank>GAAATTTTCGAAAAACTTCGGAATTCAACAGAATTCATATTTTTGAAAGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTATTAGTTCTAAAACGTCCGGTTGCAAAATGATGAAATGATATATCCATACTTGCAAAAATCGTTGAAGGCCCGGAAAGGAATTTTTGATCGAAATTTCTCAAACAAAAATGTTTTTTGGTAAATTCTTGAAATTTTTTTAAACAAAAACAATTAGTTTTTGAGAAAAAAGTGTTATTTTACTTCAAAAATGCAATTTTCAGTCCGATCCCACATCCGGAAAAAAGTAAGCAAACATTTTTTATTTTTATAATTTTGTTTAAGCATTGAAAATTTGATACTTACAATTCAGCTCAAAATTAGATGCTAATTCAACGTTTTTCCAAAAAAAAAGAATTATTTTTCCTAAATTTGGAAGCTGGCCAAAACTGTCCGGGCCTTCCGGGCCGGGCCGGGCCTTGACCAACTTTTTGAAAGCCCGGCACGGCCCGTTGCAAGTATGGATATATCTATACAAACGAACCCCACAAATTGTCAGTTTCATCAAGTCGATCTTCCGAAATTTTCGAAAAACTTCGGAATTCAACAGAATTCATATTTTTGAAAGTCCCATTACAAAGTATCCCTTTTGGAATAGAAACAGTATCTAGACTGGCCGGAAAAACTAAAACATATTTCTATTTTTGTGAAAATATTCAGAAAAAAAAAGTGAAAAATTGTTACTTCAACGATAACAACCAATGCCGAGAATTTTCTGGAAACGATTGGGCTTCAGAAAAATTCCGGCAGCTCAAAAACACAATGGCGTTTTTTCAAATTTTCCAGAACTTTACCAGGAGGAAACAAAGTAGAATTTCAACAAAGATTGAGACGTTAACAATGATATAAACCAAATATCAGAGCCTCACTCAGATTAGAAAATTTCAAAGCCTGGAGTCCTGGAGATCATGATCTACCGATATGAGAAGTGGCTTTATAAACTTTCAACAGTTAAAAATGACAATTTTCATACTTTTGAAGATAGCTCCAATAGTTTTCCACATTGCAGGACAGAAATC</canonical>
            <polymorphic>AATTATTAGTTCTAAAACGTCCGGTTGCAAAATGATGAAATGATATATCCATACTTGCAAAAATCGTTGAAGGCCCGGAAAGGAATTTTTGATCGAAATTTCTCAAACAAAAATGTTTTTTGGTAAATTCTTGAAATTTTTTTAAACAAAAACAATTAGTTTTTGAGAAAAAAGTGTTATTTTACTTCAAAAATGCAATTTTCAGTCCGATCCCACATCCGGAAAAAAGTAAGCAAACATTTTTTATTTTTATAATTTTGTTTAAGCATTGAAAATTTGATACTTACAATTCAGCTCAAAATTAGATGCTAATTCAACGTTTTTCCAAAAAAAAAGAATTATTTTTCCTAAATTTGGAAGCTGGCCAAAACTGTCCGGGCCTTCCGGGCCGGGCCGGGCCTTGACCAACTTTTTGAAAGCCCGGCACGGCCCGTTGCAAGTATGGATATATCTATACAAACGAACCCCACAAATTGTCAGTTTCATCAAGTCGATCTTCYGAAATTTTCGAAAAACTTCGGAATTCAACAGAATTCATATTTTTGAAAGTCCCATTACAAAGTATCCCTTTTGGAATAGAAACAGTATCTAGACTGGCCGGAAAAACTAAAACATATTTCTATTTTTGTGAAAATATTCAGAAAAAAAAAGTGAAAAATTGTTACTTCAACGATAACAACCAATGCCGAGAATTTTCTGGAAACGATTGGGCTTCAGAAAAATTCCGGCAGCTCAAAAACACAATGGCGTTTTTTCAAATTTTCCAGAACTTTACCAGGAGGAAACAAAGTAGAATTTCAACAAAGATTGAGACGTTAACAATGATATAAACCAAATATCAGAGCCTCACTCAGATTAGAAAATTTCAAAGCCTGGAGTCCTGGAGATCATGATCTACCGATATGAGAAGTGGCTTTATAAACTTTCAACAGTTAAAAATGACAATTTTCATACTTTTGAAGATAGCTCCAATAGTTTTCCACATTGCAGGACAGAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGCAAAATGATGAAATGATA</pcr_primer_p1>
		<pcr_primer_p2>GTAATGGGACTTTCAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>535</pcr_amplicon_size>
		<canonical_amplicon>GTTGCAAAATGATGAAATGATATATCCATACTTGCAAAAATCGTTGAAGGCCCGGAAAGGAATTTTTGATCGAAATTTCTCAAACAAAAATGTTTTTTGGTAAATTCTTGAAATTTTTTTAAACAAAAACAATTAGTTTTTGAGAAAAAAGTGTTATTTTACTTCAAAAATGCAATTTTCAGTCCGATCCCACATCCGGAAAAAAGTAAGCAAACATTTTTTATTTTTATAATTTTGTTTAAGCATTGAAAATTTGATACTTACAATTCAGCTCAAAATTAGATGCTAATTCAACGTTTTTCCAAAAAAAAAGAATTATTTTTCCTAAATTTGGAAGCTGGCCAAAACTGTCCGGGCCTTCCGGGCCGGGCCGGGCCTTGACCAACTTTTTGAAAGCCCGGCACGGCCCGTTGCAAGTATGGATATATCTATACAAACGAACCCCACAAATTGTCAGTTTCATCAAGTCGATCTTCCGAAATTTTCGAAAAACTTCGGAATTCAACAGAATTCATATTTTTGAAAGTCCCATTAC</canonical_amplicon>
		<polymorphic_amplicon>GTTGCAAAATGATGAAATGATATATCCATACTTGCAAAAATCGTTGAAGGCCCGGAAAGGAATTTTTGATCGAAATTTCTCAAACAAAAATGTTTTTTGGTAAATTCTTGAAATTTTTTTAAACAAAAACAATTAGTTTTTGAGAAAAAAGTGTTATTTTACTTCAAAAATGCAATTTTCAGTCCGATCCCACATCCGGAAAAAAGTAAGCAAACATTTTTTATTTTTATAATTTTGTTTAAGCATTGAAAATTTGATACTTACAATTCAGCTCAAAATTAGATGCTAATTCAACGTTTTTCCAAAAAAAAAGAATTATTTTTCCTAAATTTGGAAGCTGGCCAAAACTGTCCGGGCCTTCCGGGCCGGGCCGGGCCTTGACCAACTTTTTGAAAGCCCGGCACGGCCCGTTGCAAGTATGGATATATCTATACAAACGAACCCCACAAATTGTCAGTTTCATCAAGTCGATCTTCYGAAATTTTCGAAAAACTTCGGAATTCAACAGAATTCATATTTTTGAAAGTCCCATTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14492</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>245222</contig_pos>
        <strand>+</strand>
        <context>TAATTTGGAA[A/G]TTATCGTGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCAAAAAAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAA</left_flank>
        <right_flank>TTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCC</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACAAATGATTTCTGAGAAATGACTAATTGAGTTATTAAGGTTGGCACCAATCTATGAAACTGCCTCAACCCGGAAATTCTACCATGGACGGACAGAAACAGTTCGAAGTTTGACGCCAGACCTTGCCAAGTACCTAGAAGCCTGTGAAAATTCCGCAACGGTAAAGAGTAAACAAATACCTCGATTCAATTTGTTTTCAAAAATTTTACAGAACGAAACTATCAAAACACTGTTCTTTGATGCCTATAACTCACATAATACGTTGATGGACGCTGCTCGAGACGGAAAAGGAATTGATAGACATTTCCTTGGACTGAGGTACTTTATTGGAGGGCGCAGCGGGTTGGTCCGTGCCCATAAAAAGTTGTTATTGCGGGATGGACCAAATTAGAAGTTTGGGGTGATGAATAACGACAAACTACACAGAAAGAAAAACGCCATAAAATTGCAAAAAAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTG</canonical>
            <polymorphic>TGACAAATGATTTCTGAGAAATGACTAATTGAGTTATTAAGGTTGGCACCAATCTATGAAACTGCCTCAACCCGGAAATTCTACCATGGACGGACAGAAACAGTTCGAAGTTTGACGCCAGACCTTGCCAAGTACCTAGAAGCCTGTGAAAATTCCGCAACGGTAAAGAGTAAACAAATACCTCGATTCAATTTGTTTTCAAAAATTTTACAGAACGAAACTATCAAAACACTGTTCTTTGATGCCTATAACTCACATAATACGTTGATGGACGCTGCTCGAGACGGAAAAGGAATTGATAGACATTTCCTTGGACTGAGGTACTTTATTGGAGGGCGCAGCGGGTTGGTCCGTGCCCATAAAAAGTTGTTATTGCGGGATGGACCAAATTAGAAGTTTGGGGTGATGAATAACGACAAACTACACAGAAAGAAAAACGCCATAAAATTGCAAAAAAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAARTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAAAACGCCATAAAATTG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCTTATTTTTCCATATAACG</pcr_primer_p2>
		<pcr_amplicon_size>314</pcr_amplicon_size>
		<canonical_amplicon>AAGAAAAACGCCATAAAATTGCAAAAAAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAGAAAAACGCCATAAAATTGCAAAAAAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAARTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14493</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>245282</contig_pos>
        <strand></strand>
        <context>ctacatatct[T/C]atttcctgtg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCT</left_flank>
        <right_flank>ATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGCCTCAACCCGGAAATTCTACCATGGACGGACAGAAACAGTTCGAAGTTTGACGCCAGACCTTGCCAAGTACCTAGAAGCCTGTGAAAATTCCGCAACGGTAAAGAGTAAACAAATACCTCGATTCAATTTGTTTTCAAAAATTTTACAGAACGAAACTATCAAAACACTGTTCTTTGATGCCTATAACTCACATAATACGTTGATGGACGCTGCTCGAGACGGAAAAGGAATTGATAGACATTTCCTTGGACTGAGGTACTTTATTGGAGGGCGCAGCGGGTTGGTCCGTGCCCATAAAAAGTTGTTATTGCGGGATGGACCAAATTAGAAGTTTGGGGTGATGAATAACGACAAACTACACAGAAAGAAAAACGCCATAAAATTGCAAAAAAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTGAAATCTTATGGTGAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGT</canonical>
            <polymorphic>ACTGCCTCAACCCGGAAATTCTACCATGGACGGACAGAAACAGTTCGAAGTTTGACGCCAGACCTTGCCAAGTACCTAGAAGCCTGTGAAAATTCCGCAACGGTAAAGAGTAAACAAATACCTCGATTCAATTTGTTTTCAAAAATTTTACAGAACGAAACTATCAAAACACTGTTCTTTGATGCCTATAACTCACATAATACGTTGATGGACGCTGCTCGAGACGGAAAAGGAATTGATAGACATTTCCTTGGACTGAGGTACTTTATTGGAGGGCGCAGCGGGTTGGTCCGTGCCCATAAAAAGTTGTTATTGCGGGATGGACCAAATTAGAAGTTTGGGGTGATGAATAACGACAAACTACACAGAAAGAAAAACGCCATAAAATTGCAAAAAAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTYATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTGAAATCTTATGGTGAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTGGTTCCACAATAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCTTATTTTTCCATATAACG</pcr_primer_p2>
		<pcr_amplicon_size>288</pcr_amplicon_size>
		<canonical_amplicon>AAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTYATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14494</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>245342</contig_pos>
        <strand></strand>
        <context>atgttatgat[T/G]aacawtttgt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGAT</left_flank>
        <right_flank>AACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACCTTGCCAAGTACCTAGAAGCCTGTGAAAATTCCGCAACGGTAAAGAGTAAACAAATACCTCGATTCAATTTGTTTTCAAAAATTTTACAGAACGAAACTATCAAAACACTGTTCTTTGATGCCTATAACTCACATAATACGTTGATGGACGCTGCTCGAGACGGAAAAGGAATTGATAGACATTTCCTTGGACTGAGGTACTTTATTGGAGGGCGCAGCGGGTTGGTCCGTGCCCATAAAAAGTTGTTATTGCGGGATGGACCAAATTAGAAGTTTGGGGTGATGAATAACGACAAACTACACAGAAAGAAAAACGCCATAAAATTGCAAAAAAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTGAAATCTTATGGTGAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGTGGGGGAATGGGAATTTCCTATTGTCTACAAGGTAACGTTTTTTTTCAGTTTTTAAAGAGA</canonical>
            <polymorphic>GACCTTGCCAAGTACCTAGAAGCCTGTGAAAATTCCGCAACGGTAAAGAGTAAACAAATACCTCGATTCAATTTGTTTTCAAAAATTTTACAGAACGAAACTATCAAAACACTGTTCTTTGATGCCTATAACTCACATAATACGTTGATGGACGCTGCTCGAGACGGAAAAGGAATTGATAGACATTTCCTTGGACTGAGGTACTTTATTGGAGGGCGCAGCGGGTTGGTCCGTGCCCATAAAAAGTTGTTATTGCGGGATGGACCAAATTAGAAGTTTGGGGTGATGAATAACGACAAACTACACAGAAAGAAAAACGCCATAAAATTGCAAAAAAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATKAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTGAAATCTTATGGTGAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGTGGGGGAATGGGAATTTCCTATTGTCTACAAGGTAACGTTTTTTTTCAGTTTTTAAAGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>424 192 174 127 75 8</canonical_bands>
                <polymorphic_bands>424 249 192 127 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTGGTTCCACAATAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCTTATTTTTCCATATAACG</pcr_primer_p2>
		<pcr_amplicon_size>288</pcr_amplicon_size>
		<canonical_amplicon>AAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATKAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14495</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>245347</contig_pos>
        <strand></strand>
        <context>atgatkaaca[A/T]tttgttagtr</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACA</left_flank>
        <right_flank>TTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCCAAGTACCTAGAAGCCTGTGAAAATTCCGCAACGGTAAAGAGTAAACAAATACCTCGATTCAATTTGTTTTCAAAAATTTTACAGAACGAAACTATCAAAACACTGTTCTTTGATGCCTATAACTCACATAATACGTTGATGGACGCTGCTCGAGACGGAAAAGGAATTGATAGACATTTCCTTGGACTGAGGTACTTTATTGGAGGGCGCAGCGGGTTGGTCCGTGCCCATAAAAAGTTGTTATTGCGGGATGGACCAAATTAGAAGTTTGGGGTGATGAATAACGACAAACTACACAGAAAGAAAAACGCCATAAAATTGCAAAAAAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTGAAATCTTATGGTGAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGTGGGGGAATGGGAATTTCCTATTGTCTACAAGGTAACGTTTTTTTTCAGTTTTTAAAGAGAAGGAT</canonical>
            <polymorphic>TGCCAAGTACCTAGAAGCCTGTGAAAATTCCGCAACGGTAAAGAGTAAACAAATACCTCGATTCAATTTGTTTTCAAAAATTTTACAGAACGAAACTATCAAAACACTGTTCTTTGATGCCTATAACTCACATAATACGTTGATGGACGCTGCTCGAGACGGAAAAGGAATTGATAGACATTTCCTTGGACTGAGGTACTTTATTGGAGGGCGCAGCGGGTTGGTCCGTGCCCATAAAAAGTTGTTATTGCGGGATGGACCAAATTAGAAGTTTGGGGTGATGAATAACGACAAACTACACAGAAAGAAAAACGCCATAAAATTGCAAAAAAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAWTTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTGAAATCTTATGGTGAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGTGGGGGAATGGGAATTTCCTATTGTCTACAAGGTAACGTTTTTTTTCAGTTTTTAAAGAGAAGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>133 94 90 82 81 58 57 54 49 45 39 38 35 29 25 17 17 15 14 12 9 7</canonical_bands>
                <polymorphic_bands>145 94 90 82 81 58 57 54 49 45 39 38 35 29 25 17 17 15 14 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTGGTTCCACAATAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCTTATTTTTCCATATAACG</pcr_primer_p2>
		<pcr_amplicon_size>288</pcr_amplicon_size>
		<canonical_amplicon>AAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAWTTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14496</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>245357</contig_pos>
        <strand></strand>
        <context>wtttgttagt[G/A]aattacgttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGT</left_flank>
        <right_flank>AATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAGAAGCCTGTGAAAATTCCGCAACGGTAAAGAGTAAACAAATACCTCGATTCAATTTGTTTTCAAAAATTTTACAGAACGAAACTATCAAAACACTGTTCTTTGATGCCTATAACTCACATAATACGTTGATGGACGCTGCTCGAGACGGAAAAGGAATTGATAGACATTTCCTTGGACTGAGGTACTTTATTGGAGGGCGCAGCGGGTTGGTCCGTGCCCATAAAAAGTTGTTATTGCGGGATGGACCAAATTAGAAGTTTGGGGTGATGAATAACGACAAACTACACAGAAAGAAAAACGCCATAAAATTGCAAAAAAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTGAAATCTTATGGTGAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGTGGGGGAATGGGAATTTCCTATTGTCTACAAGGTAACGTTTTTTTTCAGTTTTTAAAGAGAAGGATACATTAAAAA</canonical>
            <polymorphic>CTAGAAGCCTGTGAAAATTCCGCAACGGTAAAGAGTAAACAAATACCTCGATTCAATTTGTTTTCAAAAATTTTACAGAACGAAACTATCAAAACACTGTTCTTTGATGCCTATAACTCACATAATACGTTGATGGACGCTGCTCGAGACGGAAAAGGAATTGATAGACATTTCCTTGGACTGAGGTACTTTATTGGAGGGCGCAGCGGGTTGGTCCGTGCCCATAAAAAGTTGTTATTGCGGGATGGACCAAATTAGAAGTTTGGGGTGATGAATAACGACAAACTACACAGAAAGAAAAACGCCATAAAATTGCAAAAAAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTRAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTGAAATCTTATGGTGAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGTGGGGGAATGGGAATTTCCTATTGTCTACAAGGTAACGTTTTTTTTCAGTTTTTAAAGAGAAGGATACATTAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>122 117 100 83 74 58 56 50 48 48 48 42 25 24 22 20 17 16 13 9 6 2</canonical_bands>
                <polymorphic_bands>122 117 100 83 74 70 58 56 50 48 48 42 25 24 20 17 16 13 9 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTGGTTCCACAATAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCTTATTTTTCCATATAACG</pcr_primer_p2>
		<pcr_amplicon_size>288</pcr_amplicon_size>
		<canonical_amplicon>AAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTRAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14497</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>245384</contig_pos>
        <strand></strand>
        <context>ctgtcacaga[A/T]agtgagatat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGA</left_flank>
        <right_flank>AGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAAAGAGTAAACAAATACCTCGATTCAATTTGTTTTCAAAAATTTTACAGAACGAAACTATCAAAACACTGTTCTTTGATGCCTATAACTCACATAATACGTTGATGGACGCTGCTCGAGACGGAAAAGGAATTGATAGACATTTCCTTGGACTGAGGTACTTTATTGGAGGGCGCAGCGGGTTGGTCCGTGCCCATAAAAAGTTGTTATTGCGGGATGGACCAAATTAGAAGTTTGGGGTGATGAATAACGACAAACTACACAGAAAGAAAAACGCCATAAAATTGCAAAAAAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTGAAATCTTATGGTGAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGTGGGGGAATGGGAATTTCCTATTGTCTACAAGGTAACGTTTTTTTTCAGTTTTTAAAGAGAAGGATACATTAAAAAATCACTTCCACAGTCTCTTCAAAATTC</canonical>
            <polymorphic>GTAAAGAGTAAACAAATACCTCGATTCAATTTGTTTTCAAAAATTTTACAGAACGAAACTATCAAAACACTGTTCTTTGATGCCTATAACTCACATAATACGTTGATGGACGCTGCTCGAGACGGAAAAGGAATTGATAGACATTTCCTTGGACTGAGGTACTTTATTGGAGGGCGCAGCGGGTTGGTCCGTGCCCATAAAAAGTTGTTATTGCGGGATGGACCAAATTAGAAGTTTGGGGTGATGAATAACGACAAACTACACAGAAAGAAAAACGCCATAAAATTGCAAAAAAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAWAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTGAAATCTTATGGTGAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGTGGGGGAATGGGAATTTCCTATTGTCTACAAGGTAACGTTTTTTTTCAGTTTTTAAAGAGAAGGATACATTAAAAAATCACTTCCACAGTCTCTTCAAAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTGGTTCCACAATAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCTTATTTTTCCATATAACG</pcr_primer_p2>
		<pcr_amplicon_size>288</pcr_amplicon_size>
		<canonical_amplicon>AAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAWAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14498</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>245413</contig_pos>
        <strand></strand>
        <context>gcaaaattga[C/G]ggtttgagtt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGA</left_flank>
        <right_flank>GGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGTTTTCAAAAATTTTACAGAACGAAACTATCAAAACACTGTTCTTTGATGCCTATAACTCACATAATACGTTGATGGACGCTGCTCGAGACGGAAAAGGAATTGATAGACATTTCCTTGGACTGAGGTACTTTATTGGAGGGCGCAGCGGGTTGGTCCGTGCCCATAAAAAGTTGTTATTGCGGGATGGACCAAATTAGAAGTTTGGGGTGATGAATAACGACAAACTACACAGAAAGAAAAACGCCATAAAATTGCAAAAAAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTGAAATCTTATGGTGAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGTGGGGGAATGGGAATTTCCTATTGTCTACAAGGTAACGTTTTTTTTCAGTTTTTAAAGAGAAGGATACATTAAAAAATCACTTCCACAGTCTCTTCAAAATTCACACGGTAACTCAAAAAACCCATAAATAT</canonical>
            <polymorphic>TTTGTTTTCAAAAATTTTACAGAACGAAACTATCAAAACACTGTTCTTTGATGCCTATAACTCACATAATACGTTGATGGACGCTGCTCGAGACGGAAAAGGAATTGATAGACATTTCCTTGGACTGAGGTACTTTATTGGAGGGCGCAGCGGGTTGGTCCGTGCCCATAAAAAGTTGTTATTGCGGGATGGACCAAATTAGAAGTTTGGGGTGATGAATAACGACAAACTACACAGAAAGAAAAACGCCATAAAATTGCAAAAAAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGASGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTGAAATCTTATGGTGAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGTGGGGGAATGGGAATTTCCTATTGTCTACAAGGTAACGTTTTTTTTCAGTTTTTAAAGAGAAGGATACATTAAAAAATCACTTCCACAGTCTCTTCAAAATTCACACGGTAACTCAAAAAACCCATAAATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>459 455 42 24 20</canonical_bands>
                <polymorphic_bands>914 42 24 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTGGTTCCACAATAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>AAGCTATTTTTCTTATTTTTCCATA</pcr_primer_p2>
		<pcr_amplicon_size>293</pcr_amplicon_size>
		<canonical_amplicon>AAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAATAGCTT</canonical_amplicon>
		<polymorphic_amplicon>AAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGASGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAATAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14499</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>245438</contig_pos>
        <strand>+</strand>
        <context>attagagTGT[A/T]AACGTTATAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGT</left_flank>
        <right_flank>AACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAACTATCAAAACACTGTTCTTTGATGCCTATAACTCACATAATACGTTGATGGACGCTGCTCGAGACGGAAAAGGAATTGATAGACATTTCCTTGGACTGAGGTACTTTATTGGAGGGCGCAGCGGGTTGGTCCGTGCCCATAAAAAGTTGTTATTGCGGGATGGACCAAATTAGAAGTTTGGGGTGATGAATAACGACAAACTACACAGAAAGAAAAACGCCATAAAATTGCAAAAAAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTGAAATCTTATGGTGAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGTGGGGGAATGGGAATTTCCTATTGTCTACAAGGTAACGTTTTTTTTCAGTTTTTAAAGAGAAGGATACATTAAAAAATCACTTCCACAGTCTCTTCAAAATTCACACGGTAACTCAAAAAACCCATAAATATCACCCCTTTCCTTTTCTCTAAGTTA</canonical>
            <polymorphic>GAAACTATCAAAACACTGTTCTTTGATGCCTATAACTCACATAATACGTTGATGGACGCTGCTCGAGACGGAAAAGGAATTGATAGACATTTCCTTGGACTGAGGTACTTTATTGGAGGGCGCAGCGGGTTGGTCCGTGCCCATAAAAAGTTGTTATTGCGGGATGGACCAAATTAGAAGTTTGGGGTGATGAATAACGACAAACTACACAGAAAGAAAAACGCCATAAAATTGCAAAAAAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTWAACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTGAAATCTTATGGTGAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGTGGGGGAATGGGAATTTCCTATTGTCTACAAGGTAACGTTTTTTTTCAGTTTTTAAAGAGAAGGATACATTAAAAAATCACTTCCACAGTCTCTTCAAAATTCACACGGTAACTCAAAAAACCCATAAATATCACCCCTTTCCTTTTCTCTAAGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCACAATAAAGAAAAAGTGTT</pcr_primer_p1>
		<pcr_primer_p2>AAATTCGAAGTCAATAGAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>424</pcr_amplicon_size>
		<canonical_amplicon>TTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTT</canonical_amplicon>
		<polymorphic_amplicon>TTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTWAACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14500</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>245489</contig_pos>
        <strand>+</strand>
        <context>CCCTGAAAAA[A/T]TTTGAGATYC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAA</left_flank>
        <right_flank>TTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGACGCTGCTCGAGACGGAAAAGGAATTGATAGACATTTCCTTGGACTGAGGTACTTTATTGGAGGGCGCAGCGGGTTGGTCCGTGCCCATAAAAAGTTGTTATTGCGGGATGGACCAAATTAGAAGTTTGGGGTGATGAATAACGACAAACTACACAGAAAGAAAAACGCCATAAAATTGCAAAAAAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTGAAATCTTATGGTGAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGTGGGGGAATGGGAATTTCCTATTGTCTACAAGGTAACGTTTTTTTTCAGTTTTTAAAGAGAAGGATACATTAAAAAATCACTTCCACAGTCTCTTCAAAATTCACACGGTAACTCAAAAAACCCATAAATATCACCCCTTTCCTTTTCTCTAAGTTAACCTATTTTTCAGTTTCCTTGGCTACAATGAAAATGGATGTTTCGGCTATG</canonical>
            <polymorphic>ATGGACGCTGCTCGAGACGGAAAAGGAATTGATAGACATTTCCTTGGACTGAGGTACTTTATTGGAGGGCGCAGCGGGTTGGTCCGTGCCCATAAAAAGTTGTTATTGCGGGATGGACCAAATTAGAAGTTTGGGGTGATGAATAACGACAAACTACACAGAAAGAAAAACGCCATAAAATTGCAAAAAAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAWTTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTGAAATCTTATGGTGAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGTGGGGGAATGGGAATTTCCTATTGTCTACAAGGTAACGTTTTTTTTCAGTTTTTAAAGAGAAGGATACATTAAAAAATCACTTCCACAGTCTCTTCAAAATTCACACGGTAACTCAAAAAACCCATAAATATCACCCCTTTCCTTTTCTCTAAGTTAACCTATTTTTCAGTTTCCTTGGCTACAATGAAAATGGATGTTTCGGCTATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>498 149 110 86 57 35 17 17 15 9 7</canonical_bands>
                <polymorphic_bands>513 149 110 86 57 35 17 17 9 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>133 110 94 86 82 81 58 57 49 45 38 35 29 26 17 17 15 12 9 7</canonical_bands>
                <polymorphic_bands>133 110 96 94 86 82 58 57 49 45 38 35 29 26 17 17 12 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCACAATAAAGAAAAAGTGTT</pcr_primer_p1>
		<pcr_primer_p2>AAATTCGAAGTCAATAGAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>424</pcr_amplicon_size>
		<canonical_amplicon>TTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTT</canonical_amplicon>
		<polymorphic_amplicon>TTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAWTTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14501</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>245498</contig_pos>
        <strand>+</strand>
        <context>AWTTTGAGAT[C/T]CCAAAATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGAT</left_flank>
        <right_flank>CCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTCGAGACGGAAAAGGAATTGATAGACATTTCCTTGGACTGAGGTACTTTATTGGAGGGCGCAGCGGGTTGGTCCGTGCCCATAAAAAGTTGTTATTGCGGGATGGACCAAATTAGAAGTTTGGGGTGATGAATAACGACAAACTACACAGAAAGAAAAACGCCATAAAATTGCAAAAAAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTGAAATCTTATGGTGAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGTGGGGGAATGGGAATTTCCTATTGTCTACAAGGTAACGTTTTTTTTCAGTTTTTAAAGAGAAGGATACATTAAAAAATCACTTCCACAGTCTCTTCAAAATTCACACGGTAACTCAAAAAACCCATAAATATCACCCCTTTCCTTTTCTCTAAGTTAACCTATTTTTCAGTTTCCTTGGCTACAATGAAAATGGATGTTTCGGCTATGTAGTTCCAA</canonical>
            <polymorphic>GCTCGAGACGGAAAAGGAATTGATAGACATTTCCTTGGACTGAGGTACTTTATTGGAGGGCGCAGCGGGTTGGTCCGTGCCCATAAAAAGTTGTTATTGCGGGATGGACCAAATTAGAAGTTTGGGGTGATGAATAACGACAAACTACACAGAAAGAAAAACGCCATAAAATTGCAAAAAAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATYCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTGAAATCTTATGGTGAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGTGGGGGAATGGGAATTTCCTATTGTCTACAAGGTAACGTTTTTTTTCAGTTTTTAAAGAGAAGGATACATTAAAAAATCACTTCCACAGTCTCTTCAAAATTCACACGGTAACTCAAAAAACCCATAAATATCACCCCTTTCCTTTTCTCTAAGTTAACCTATTTTTCAGTTTCCTTGGCTACAATGAAAATGGATGTTTCGGCTATGTAGTTCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTTATATGGAAAAATAAGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCTGAAAAACTGAAAAACAATTC</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>CGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGA</canonical_amplicon>
		<polymorphic_amplicon>CGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATYCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14502</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>245532</contig_pos>
        <strand>+</strand>
        <context>TTTCCAATAC[A/T]TGAAACGTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATAC</left_flank>
        <right_flank>TGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGACTGAGGTACTTTATTGGAGGGCGCAGCGGGTTGGTCCGTGCCCATAAAAAGTTGTTATTGCGGGATGGACCAAATTAGAAGTTTGGGGTGATGAATAACGACAAACTACACAGAAAGAAAAACGCCATAAAATTGCAAAAAAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTGAAATCTTATGGTGAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGTGGGGGAATGGGAATTTCCTATTGTCTACAAGGTAACGTTTTTTTTCAGTTTTTAAAGAGAAGGATACATTAAAAAATCACTTCCACAGTCTCTTCAAAATTCACACGGTAACTCAAAAAACCCATAAATATCACCCCTTTCCTTTTCTCTAAGTTAACCTATTTTTCAGTTTCCTTGGCTACAATGAAAATGGATGTTTCGGCTATGTAGTTCCAATGTGTAAAGACGGATACGGTGCTTTCTATCGCAT</canonical>
            <polymorphic>TTGGACTGAGGTACTTTATTGGAGGGCGCAGCGGGTTGGTCCGTGCCCATAAAAAGTTGTTATTGCGGGATGGACCAAATTAGAAGTTTGGGGTGATGAATAACGACAAACTACACAGAAAGAAAAACGCCATAAAATTGCAAAAAAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACWTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTGAAATCTTATGGTGAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGTGGGGGAATGGGAATTTCCTATTGTCTACAAGGTAACGTTTTTTTTCAGTTTTTAAAGAGAAGGATACATTAAAAAATCACTTCCACAGTCTCTTCAAAATTCACACGGTAACTCAAAAAACCCATAAATATCACCCCTTTCCTTTTCTCTAAGTTAACCTATTTTTCAGTTTCCTTGGCTACAATGAAAATGGATGTTTCGGCTATGTAGTTCCAATGTGTAAAGACGGATACGGTGCTTTCTATCGCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAATAAGAAAAATAGCTTTTGA</pcr_primer_p1>
		<pcr_primer_p2>ACATTCTGAAAAACTGAAAAACA</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>GAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGT</canonical_amplicon>
		<polymorphic_amplicon>GAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACWTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14503</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>245659</contig_pos>
        <strand>+</strand>
        <context>TGGAAAACAA[A/G]TATTCTATAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAA</left_flank>
        <right_flank>TATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGTC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCCATAAAATTGCAAAAAAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTGAAATCTTATGGTGAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGTGGGGGAATGGGAATTTCCTATTGTCTACAAGGTAACGTTTTTTTTCAGTTTTTAAAGAGAAGGATACATTAAAAAATCACTTCCACAGTCTCTTCAAAATTCACACGGTAACTCAAAAAACCCATAAATATCACCCCTTTCCTTTTCTCTAAGTTAACCTATTTTTCAGTTTCCTTGGCTACAATGAAAATGGATGTTTCGGCTATGTAGTTCCAATGTGTAAAGACGGATACGGTGCTTTCTATCGCATCAATGCTTCTAGGTCTGAAAAACCATTTTAAGATTCACTTCTCCTTTTTTAATTTGTAGATTCACATTCACCTTATCCAATTACTTTGACGACGCAACGAATGGCGACGAATTCCGCGAGAACCTCG</canonical>
            <polymorphic>CGCCATAAAATTGCAAAAAAGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAARTATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTGAAATCTTATGGTGAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGTGGGGGAATGGGAATTTCCTATTGTCTACAAGGTAACGTTTTTTTTCAGTTTTTAAAGAGAAGGATACATTAAAAAATCACTTCCACAGTCTCTTCAAAATTCACACGGTAACTCAAAAAACCCATAAATATCACCCCTTTCCTTTTCTCTAAGTTAACCTATTTTTCAGTTTCCTTGGCTACAATGAAAATGGATGTTTCGGCTATGTAGTTCCAATGTGTAAAGACGGATACGGTGCTTTCTATCGCATCAATGCTTCTAGGTCTGAAAAACCATTTTAAGATTCACTTCTCCTTTTTTAATTTGTAGATTCACATTCACCTTATCCAATTACTTTGACGACGCAACGAATGGCGACGAATTCCGCGAGAACCTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTGACTTCGAATTTCTTGAC</pcr_primer_p1>
		<pcr_primer_p2>TCCTTCTCTTTAAAAACTGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTGAAATCTTATGGTGAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGTGGGGGAATGGGAATTTCCTATTGTCTACAAGGTAACGTTTTTTTTCAGTTTTTAAAGAGAAGGA</canonical_amplicon>
		<polymorphic_amplicon>CTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAARTATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTGAAATCTTATGGTGAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGTGGGGGAATGGGAATTTCCTATTGTCTACAAGGTAACGTTTTTTTTCAGTTTTTAAAGAGAAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14504</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>245678</contig_pos>
        <strand>+</strand>
        <context>ACCATCCACA[C/T]CTCGAATTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACA</left_flank>
        <right_flank>CTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTGAAATCT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTGAAATCTTATGGTGAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGTGGGGGAATGGGAATTTCCTATTGTCTACAAGGTAACGTTTTTTTTCAGTTTTTAAAGAGAAGGATACATTAAAAAATCACTTCCACAGTCTCTTCAAAATTCACACGGTAACTCAAAAAACCCATAAATATCACCCCTTTCCTTTTCTCTAAGTTAACCTATTTTTCAGTTTCCTTGGCTACAATGAAAATGGATGTTTCGGCTATGTAGTTCCAATGTGTAAAGACGGATACGGTGCTTTCTATCGCATCAATGCTTCTAGGTCTGAAAAACCATTTTAAGATTCACTTCTCCTTTTTTAATTTGTAGATTCACATTCACCTTATCCAATTACTTTGACGACGCAACGAATGGCGACGAATTCCGCGAGAACCTCGAGTATTCTCTCGATTTCAT</canonical>
            <polymorphic>AGTTGGTTCCACAATAAAGAAAAAGTGTTATTGTAATTTGGAAGTTATCGTGTTTCCACTAATAGAAGCTCTCCCAAGCCGTCAACTTTAAGCCTACATATCTTATTTCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACAYCTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTGAAATCTTATGGTGAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGTGGGGGAATGGGAATTTCCTATTGTCTACAAGGTAACGTTTTTTTTCAGTTTTTAAAGAGAAGGATACATTAAAAAATCACTTCCACAGTCTCTTCAAAATTCACACGGTAACTCAAAAAACCCATAAATATCACCCCTTTCCTTTTCTCTAAGTTAACCTATTTTTCAGTTTCCTTGGCTACAATGAAAATGGATGTTTCGGCTATGTAGTTCCAATGTGTAAAGACGGATACGGTGCTTTCTATCGCATCAATGCTTCTAGGTCTGAAAAACCATTTTAAGATTCACTTCTCCTTTTTTAATTTGTAGATTCACATTCACCTTATCCAATTACTTTGACGACGCAACGAATGGCGACGAATTCCGCGAGAACCTCGAGTATTCTCTCGATTTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>122 117 87 78 76 58 56 50 48 48 48 28 27 25 22 18 17 17 16 11 9 6 6 6 2 2</canonical_bands>
                <polymorphic_bands>122 117 87 78 76 60 56 50 48 48 48 28 27 25 22 18 17 17 16 11 9 6 6 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTGACTTCGAATTTCTTGAC</pcr_primer_p1>
		<pcr_primer_p2>TCCTTCTCTTTAAAAACTGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTGAAATCTTATGGTGAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGTGGGGGAATGGGAATTTCCTATTGTCTACAAGGTAACGTTTTTTTTCAGTTTTTAAAGAGAAGGA</canonical_amplicon>
		<polymorphic_amplicon>CTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACAYCTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTGAAATCTTATGGTGAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGTGGGGGAATGGGAATTTCCTATTGTCTACAAGGTAACGTTTTTTTTCAGTTTTTAAAGAGAAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14505</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>247672</contig_pos>
        <strand>+</strand>
        <context>AAGGTTTAAA[A/T]TTTATTATCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAATGAAATTCCCTAGACAATTTTTGTTACAATTCACGTGAAGGTTTAAA</left_flank>
        <right_flank>TTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAAAAAATTATTT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCACGTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAAAAAATTATTTTCCACCGCGGATGATGGTCTCCTTGATGATGGTTGGTCCTCCCCGTCCAAATCCTGGTCCTCCACCAAATCCGTTTCCTGGTCCACCTCCGAATCCTCCACGTCCACCATATCCTGGCCCTCCTCCGAATCCATTTCCTGGTCCTCCTCCAAATCCACCACGTCCTCCGTATCCTGGTCCTCCTCCGAATCCGTTTCCTGGTCCTCCACCGAATCCTCCACGTCCGAACTGTCCTGGACCTCCACCAAATCCACCGCGTGGTCCGGCGGTCTCAATGATTGTCGTCTTCTTGACGAATCCTTGTGGGGCAGCCATGGCGGCGGCAAGGAGGCCGAGGAGAAGAATAATAGCGTAAGAGTTCATTTTGAGTGAAACTGATTGGAAATATGGAAAATCAACGCGTTTATAAAGCATATCGGTTGGGCAGAGGCGTGATAAGGCGTCATGAGA</canonical>
            <polymorphic>AAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCACGTGAAGGTTTAAAWTTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAAAAAATTATTTTCCACCGCGGATGATGGTCTCCTTGATGATGGTTGGTCCTCCCCGTCCAAATCCTGGTCCTCCACCAAATCCGTTTCCTGGTCCACCTCCGAATCCTCCACGTCCACCATATCCTGGCCCTCCTCCGAATCCATTTCCTGGTCCTCCTCCAAATCCACCACGTCCTCCGTATCCTGGTCCTCCTCCGAATCCGTTTCCTGGTCCTCCACCGAATCCTCCACGTCCGAACTGTCCTGGACCTCCACCAAATCCACCGCGTGGTCCGGCGGTCTCAATGATTGTCGTCTTCTTGACGAATCCTTGTGGGGCAGCCATGGCGGCGGCAAGGAGGCCGAGGAGAAGAATAATAGCGTAAGAGTTCATTTTGAGTGAAACTGATTGGAAATATGGAAAATCAACGCGTTTATAAAGCATATCGGTTGGGCAGAGGCGTGATAAGGCGTCATGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>502 171 59 56 43 43 42 42 11 9 8 8 6</canonical_bands>
                <polymorphic_bands>545 171 59 56 43 42 42 11 9 8 8 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>458 92 79 59 56 44 42 42 28 19 15 12 12 11 8 8 7 6 2</canonical_bands>
                <polymorphic_bands>458 92 79 63 59 56 42 42 28 15 12 12 11 8 8 7 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTGTAGTCATTTTTCCAATGAA</pcr_primer_p1>
		<pcr_primer_p2>ATCATCAAGGAGACCATCATC</pcr_primer_p2>
		<pcr_amplicon_size>147</pcr_amplicon_size>
		<canonical_amplicon>ACTGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCACGTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAAAAAATTATTTTCCACCGCGGATGATGGTCTCCTTGATGAT</canonical_amplicon>
		<polymorphic_amplicon>ACTGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCACGTGAAGGTTTAAAWTTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAAAAAATTATTTTCCACCGCGGATGATGGTCTCCTTGATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14506</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>247658</contig_pos>
        <strand></strand>
        <context>TTACAATTCA[C/A]GTGAAGGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCA</left_flank>
        <right_flank>GTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCACGTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAAAAAATTATTTTCCACCGCGGATGATGGTCTCCTTGATGATGGTTGGTCCTCCCCGTCCAAATCCTGGTCCTCCACCAAATCCGTTTCCTGGTCCACCTCCGAATCCTCCACGTCCACCATATCCTGGCCCTCCTCCGAATCCATTTCCTGGTCCTCCTCCAAATCCACCACGTCCTCCGTATCCTGGTCCTCCTCCGAATCCGTTTCCTGGTCCTCCACCGAATCCTCCACGTCCGAACTGTCCTGGACCTCCACCAAATCCACCGCGTGGTCCGGCGGTCTCAATGATTGTCGTCTTCTTGACGAATCCTTGTGGGGCAGCCATGGCGGCGGCAAGGAGGCCGAGGAGAAGAATAATAGCGTAAGAGTTCATTTTGAGTGAAACTGATTGGAAATATGGAAAATCAACGCGTTTATAAAGCATATCGGTTGGGCAGAGGCGTGAT</canonical>
            <polymorphic>CTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCAMGTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAAAAAATTATTTTCCACCGCGGATGATGGTCTCCTTGATGATGGTTGGTCCTCCCCGTCCAAATCCTGGTCCTCCACCAAATCCGTTTCCTGGTCCACCTCCGAATCCTCCACGTCCACCATATCCTGGCCCTCCTCCGAATCCATTTCCTGGTCCTCCTCCAAATCCACCACGTCCTCCGTATCCTGGTCCTCCTCCGAATCCGTTTCCTGGTCCTCCACCGAATCCTCCACGTCCGAACTGTCCTGGACCTCCACCAAATCCACCGCGTGGTCCGGCGGTCTCAATGATTGTCGTCTTCTTGACGAATCCTTGTGGGGCAGCCATGGCGGCGGCAAGGAGGCCGAGGAGAAGAATAATAGCGTAAGAGTTCATTTTGAGTGAAACTGATTGGAAATATGGAAAATCAACGCGTTTATAAAGCATATCGGTTGGGCAGAGGCGTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACGTG</site>
                <isoschizomers>
                    <enzyme>AcvI</enzyme>
                    <enzyme>BbrPI</enzyme>
                    <enzyme>Eco72I</enzyme>
                    <enzyme>PmaCI</enzyme>
                    <enzyme>PmlI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>402 66 65 63 60 56 51 48 45 39 24 21 15 12 9 7 6 4 3 2 2</canonical_bands>
                <polymorphic_bands>402 66 65 63 60 60 51 48 45 39 24 21 15 12 9 7 6 3 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>499 216 165 60 60</canonical_bands>
                <polymorphic_bands>664 216 60 60</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTGTAGTCATTTTTCCAATGAA</pcr_primer_p1>
		<pcr_primer_p2>ATCATCAAGGAGACCATCATC</pcr_primer_p2>
		<pcr_amplicon_size>147</pcr_amplicon_size>
		<canonical_amplicon>ACTGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCACGTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAAAAAATTATTTTCCACCGCGGATGATGGTCTCCTTGATGAT</canonical_amplicon>
		<polymorphic_amplicon>ACTGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCAMGTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAAAAAATTATTTTCCACCGCGGATGATGGTCTCCTTGATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14513</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>247574</contig_pos>
        <strand></strand>
        <context>taaaattttt[T/G]aaaaattcct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTT</left_flank>
        <right_flank>AAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCATAATCATTGATGATCACATTTGAAGAGAAAACTCGATTTTAATAAACGTATTGCTGAGAAGATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCACGTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAAAAAATTATTTTCCACCGCGGATGATGGTCTCCTTGATGATGGTTGGTCCTCCCCGTCCAAATCCTGGTCCTCCACCAAATCCGTTTCCTGGTCCACCTCCGAATCCTCCACGTCCACCATATCCTGGCCCTCCTCCGAATCCATTTCCTGGTCCTCCTCCAAATCCACCACGTCCTCCGTATCCTGGTCCTCCTCCGAATCCGTTTCCTGGTCCTCCACCGAATCCTCCACGTCCGAACTGTCCTGGACCTCCACCAAATCCACCGCGTGGTCCGGCGGTCTCAATGATTGTCGTCTTCTTGACGAATCCTTGTGGGGCAGCCATGGCGGCGGCAAGGAGGCCGAGGAGAAGAATAATAGCG</canonical>
            <polymorphic>TGCATAATCATTGATGATCACATTTGAAGAGAAAACTCGATTTTAATAAACGTATTGCTGAGAAGATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTKAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCACGTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAAAAAATTATTTTCCACCGCGGATGATGGTCTCCTTGATGATGGTTGGTCCTCCCCGTCCAAATCCTGGTCCTCCACCAAATCCGTTTCCTGGTCCACCTCCGAATCCTCCACGTCCACCATATCCTGGCCCTCCTCCGAATCCATTTCCTGGTCCTCCTCCAAATCCACCACGTCCTCCGTATCCTGGTCCTCCTCCGAATCCGTTTCCTGGTCCTCCACCGAATCCTCCACGTCCGAACTGTCCTGGACCTCCACCAAATCCACCGCGTGGTCCGGCGGTCTCAATGATTGTCGTCTTCTTGACGAATCCTTGTGGGGCAGCCATGGCGGCGGCAAGGAGGCCGAGGAGAAGAATAATAGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>465 406 94 25 10</canonical_bands>
                <polymorphic_bands>465 406 104 25</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>421 384 94 43 25 23 10</canonical_bands>
                <polymorphic_bands>421 384 104 43 25 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCTGACTTTATGAACAAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTCATTGGAAAAATGACTACA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTKAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14529</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>247529</contig_pos>
        <strand></strand>
        <context>kcgagatgka[G/A]tagtttcttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTA</left_flank>
        <right_flank>TAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTATCGACCTGATTTGAATAATGGTGGGTGATTTTTAGAGATATGCATAATCATTGATGATCACATTTGAAGAGAAAACTCGATTTTAATAAACGTATTGCTGAGAAGATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCACGTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAAAAAATTATTTTCCACCGCGGATGATGGTCTCCTTGATGATGGTTGGTCCTCCCCGTCCAAATCCTGGTCCTCCACCAAATCCGTTTCCTGGTCCACCTCCGAATCCTCCACGTCCACCATATCCTGGCCCTCCTCCGAATCCATTTCCTGGTCCTCCTCCAAATCCACCACGTCCTCCGTATCCTGGTCCTCCTCCGAATCCGTTTCCTGGTCCTCCACCGAATCCTCCACGTCCGAACTGTCCTGGACCTCCACCAAATCCACCGCGTGGTCCGGCGGTCTCAATGATTGTCGTCTTCTTGACGAATCCTTGTGGG</canonical>
            <polymorphic>ATGTATCGACCTGATTTGAATAATGGTGGGTGATTTTTAGAGATATGCATAATCATTGATGATCACATTTGAAGAGAAAACTCGATTTTAATAAACGTATTGCTGAGAAGATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTARTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCACGTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAAAAAATTATTTTCCACCGCGGATGATGGTCTCCTTGATGATGGTTGGTCCTCCCCGTCCAAATCCTGGTCCTCCACCAAATCCGTTTCCTGGTCCACCTCCGAATCCTCCACGTCCACCATATCCTGGCCCTCCTCCGAATCCATTTCCTGGTCCTCCTCCAAATCCACCACGTCCTCCGTATCCTGGTCCTCCTCCGAATCCGTTTCCTGGTCCTCCACCGAATCCTCCACGTCCGAACTGTCCTGGACCTCCACCAAATCCACCGCGTGGTCCGGCGGTCTCAATGATTGTCGTCTTCTTGACGAATCCTTGTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCTGACTTTATGAACAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CATTGGAAAAATGACTACAGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTARTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14530</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>247527</contig_pos>
        <strand></strand>
        <context>atkcgagatg[T/G]artagtttct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATG</left_flank>
        <right_flank>AGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATGTATCGACCTGATTTGAATAATGGTGGGTGATTTTTAGAGATATGCATAATCATTGATGATCACATTTGAAGAGAAAACTCGATTTTAATAAACGTATTGCTGAGAAGATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCACGTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAAAAAATTATTTTCCACCGCGGATGATGGTCTCCTTGATGATGGTTGGTCCTCCCCGTCCAAATCCTGGTCCTCCACCAAATCCGTTTCCTGGTCCACCTCCGAATCCTCCACGTCCACCATATCCTGGCCCTCCTCCGAATCCATTTCCTGGTCCTCCTCCAAATCCACCACGTCCTCCGTATCCTGGTCCTCCTCCGAATCCGTTTCCTGGTCCTCCACCGAATCCTCCACGTCCGAACTGTCCTGGACCTCCACCAAATCCACCGCGTGGTCCGGCGGTCTCAATGATTGTCGTCTTCTTGACGAATCCTTGTG</canonical>
            <polymorphic>ATATGTATCGACCTGATTTGAATAATGGTGGGTGATTTTTAGAGATATGCATAATCATTGATGATCACATTTGAAGAGAAAACTCGATTTTAATAAACGTATTGCTGAGAAGATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGKAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCACGTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAAAAAATTATTTTCCACCGCGGATGATGGTCTCCTTGATGATGGTTGGTCCTCCCCGTCCAAATCCTGGTCCTCCACCAAATCCGTTTCCTGGTCCACCTCCGAATCCTCCACGTCCACCATATCCTGGCCCTCCTCCGAATCCATTTCCTGGTCCTCCTCCAAATCCACCACGTCCTCCGTATCCTGGTCCTCCTCCGAATCCGTTTCCTGGTCCTCCACCGAATCCTCCACGTCCGAACTGTCCTGGACCTCCACCAAATCCACCGCGTGGTCCGGCGGTCTCAATGATTGTCGTCTTCTTGACGAATCCTTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCTGACTTTATGAACAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CATTGGAAAAATGACTACAGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGKAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14531</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>247519</contig_pos>
        <strand></strand>
        <context>atttcaaaat[T/G]cgagatgkar</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAAT</left_flank>
        <right_flank>CGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAAAAAATATGTATCGACCTGATTTGAATAATGGTGGGTGATTTTTAGAGATATGCATAATCATTGATGATCACATTTGAAGAGAAAACTCGATTTTAATAAACGTATTGCTGAGAAGATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCACGTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAAAAAATTATTTTCCACCGCGGATGATGGTCTCCTTGATGATGGTTGGTCCTCCCCGTCCAAATCCTGGTCCTCCACCAAATCCGTTTCCTGGTCCACCTCCGAATCCTCCACGTCCACCATATCCTGGCCCTCCTCCGAATCCATTTCCTGGTCCTCCTCCAAATCCACCACGTCCTCCGTATCCTGGTCCTCCTCCGAATCCGTTTCCTGGTCCTCCACCGAATCCTCCACGTCCGAACTGTCCTGGACCTCCACCAAATCCACCGCGTGGTCCGGCGGTCTCAATGATTGTCGTCTTCTTGACGAA</canonical>
            <polymorphic>AACAAAAAATATGTATCGACCTGATTTGAATAATGGTGGGTGATTTTTAGAGATATGCATAATCATTGATGATCACATTTGAAGAGAAAACTCGATTTTAATAAACGTATTGCTGAGAAGATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATKCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCACGTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAAAAAATTATTTTCCACCGCGGATGATGGTCTCCTTGATGATGGTTGGTCCTCCCCGTCCAAATCCTGGTCCTCCACCAAATCCGTTTCCTGGTCCACCTCCGAATCCTCCACGTCCACCATATCCTGGCCCTCCTCCGAATCCATTTCCTGGTCCTCCTCCAAATCCACCACGTCCTCCGTATCCTGGTCCTCCTCCGAATCCGTTTCCTGGTCCTCCACCGAATCCTCCACGTCCGAACTGTCCTGGACCTCCACCAAATCCACCGCGTGGTCCGGCGGTCTCAATGATTGTCGTCTTCTTGACGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>349 171 162 59 56 43 43 42 42 11 8 8 6</canonical_bands>
                <polymorphic_bands>349 214 162 59 56 43 42 42 11 8 8 6</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>408 338 161 76 17</canonical_bands>
                <polymorphic_bands>569 338 76 17</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>491 289 115 57 40 8</canonical_bands>
                <polymorphic_bands>548 289 115 40 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>305 155 92 79 59 56 44 42 42 28 19 15 12 12 11 8 8 7 6</canonical_bands>
                <polymorphic_bands>305 155 107 92 59 56 44 42 42 19 15 12 12 11 8 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCTGACTTTATGAACAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CATTGGAAAAATGACTACAGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATKCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14532</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>247479</contig_pos>
        <strand></strand>
        <context>rtaatacttt[C/T]agagtaaaac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTT</left_flank>
        <right_flank>AGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTCTGGGCAATTTTTTTTTGGGGGATGAAGGCAGAAAACAAAAAATATGTATCGACCTGATTTGAATAATGGTGGGTGATTTTTAGAGATATGCATAATCATTGATGATCACATTTGAAGAGAAAACTCGATTTTAATAAACGTATTGCTGAGAAGATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCACGTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAAAAAATTATTTTCCACCGCGGATGATGGTCTCCTTGATGATGGTTGGTCCTCCCCGTCCAAATCCTGGTCCTCCACCAAATCCGTTTCCTGGTCCACCTCCGAATCCTCCACGTCCACCATATCCTGGCCCTCCTCCGAATCCATTTCCTGGTCCTCCTCCAAATCCACCACGTCCTCCGTATCCTGGTCCTCCTCCGAATCCGTTTCCTGGTCCTCCACCGAATCCTCCACGTCCGAACTGTCCTGGACCTCCACCAAATCCACCGC</canonical>
            <polymorphic>TTTTTTCTGGGCAATTTTTTTTTGGGGGATGAAGGCAGAAAACAAAAAATATGTATCGACCTGATTTGAATAATGGTGGGTGATTTTTAGAGATATGCATAATCATTGATGATCACATTTGAAGAGAAAACTCGATTTTAATAAACGTATTGCTGAGAAGATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTYAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCACGTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAAAAAATTATTTTCCACCGCGGATGATGGTCTCCTTGATGATGGTTGGTCCTCCCCGTCCAAATCCTGGTCCTCCACCAAATCCGTTTCCTGGTCCACCTCCGAATCCTCCACGTCCACCATATCCTGGCCCTCCTCCGAATCCATTTCCTGGTCCTCCTCCAAATCCACCACGTCCTCCGTATCCTGGTCCTCCTCCGAATCCGTTTCCTGGTCCTCCACCGAATCCTCCACGTCCGAACTGTCCTGGACCTCCACCAAATCCACCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>255 208 111 77 77 60 57 48 39 36 32</canonical_bands>
                <polymorphic_bands>255 208 188 77 60 57 48 39 36 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCTGACTTTATGAACAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CATTGGAAAAATGACTACAGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTYAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14533</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>247469</contig_pos>
        <strand></strand>
        <context>aactygcgaa[G/A]taatacttty</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAA</left_flank>
        <right_flank>TAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGCGATTTTTTTTTCTGGGCAATTTTTTTTTGGGGGATGAAGGCAGAAAACAAAAAATATGTATCGACCTGATTTGAATAATGGTGGGTGATTTTTAGAGATATGCATAATCATTGATGATCACATTTGAAGAGAAAACTCGATTTTAATAAACGTATTGCTGAGAAGATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCACGTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAAAAAATTATTTTCCACCGCGGATGATGGTCTCCTTGATGATGGTTGGTCCTCCCCGTCCAAATCCTGGTCCTCCACCAAATCCGTTTCCTGGTCCACCTCCGAATCCTCCACGTCCACCATATCCTGGCCCTCCTCCGAATCCATTTCCTGGTCCTCCTCCAAATCCACCACGTCCTCCGTATCCTGGTCCTCCTCCGAATCCGTTTCCTGGTCCTCCACCGAATCCTCCACGTCCGAACTGTCCTGGACCTCCACCA</canonical>
            <polymorphic>TGGGCGATTTTTTTTTCTGGGCAATTTTTTTTTGGGGGATGAAGGCAGAAAACAAAAAATATGTATCGACCTGATTTGAATAATGGTGGGTGATTTTTAGAGATATGCATAATCATTGATGATCACATTTGAAGAGAAAACTCGATTTTAATAAACGTATTGCTGAGAAGATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAARTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCACGTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAAAAAATTATTTTCCACCGCGGATGATGGTCTCCTTGATGATGGTTGGTCCTCCCCGTCCAAATCCTGGTCCTCCACCAAATCCGTTTCCTGGTCCACCTCCGAATCCTCCACGTCCACCATATCCTGGCCCTCCTCCGAATCCATTTCCTGGTCCTCCTCCAAATCCACCACGTCCTCCGTATCCTGGTCCTCCTCCGAATCCGTTTCCTGGTCCTCCACCGAATCCTCCACGTCCGAACTGTCCTGGACCTCCACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCTGACTTTATGAACAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CATTGGAAAAATGACTACAGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAARTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14534</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>247463</contig_pos>
        <strand></strand>
        <context>cgattcaact[C/T]gcgaartaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACT</left_flank>
        <right_flank>GCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATATTGGGCGATTTTTTTTTCTGGGCAATTTTTTTTTGGGGGATGAAGGCAGAAAACAAAAAATATGTATCGACCTGATTTGAATAATGGTGGGTGATTTTTAGAGATATGCATAATCATTGATGATCACATTTGAAGAGAAAACTCGATTTTAATAAACGTATTGCTGAGAAGATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCACGTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAAAAAATTATTTTCCACCGCGGATGATGGTCTCCTTGATGATGGTTGGTCCTCCCCGTCCAAATCCTGGTCCTCCACCAAATCCGTTTCCTGGTCCACCTCCGAATCCTCCACGTCCACCATATCCTGGCCCTCCTCCGAATCCATTTCCTGGTCCTCCTCCAAATCCACCACGTCCTCCGTATCCTGGTCCTCCTCCGAATCCGTTTCCTGGTCCTCCACCGAATCCTCCACGTCCGAACTGTCCTGGACCT</canonical>
            <polymorphic>TGATATTGGGCGATTTTTTTTTCTGGGCAATTTTTTTTTGGGGGATGAAGGCAGAAAACAAAAAATATGTATCGACCTGATTTGAATAATGGTGGGTGATTTTTAGAGATATGCATAATCATTGATGATCACATTTGAAGAGAAAACTCGATTTTAATAAACGTATTGCTGAGAAGATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTYGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCACGTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAAAAAATTATTTTCCACCGCGGATGATGGTCTCCTTGATGATGGTTGGTCCTCCCCGTCCAAATCCTGGTCCTCCACCAAATCCGTTTCCTGGTCCACCTCCGAATCCTCCACGTCCACCATATCCTGGCCCTCCTCCGAATCCATTTCCTGGTCCTCCTCCAAATCCACCACGTCCTCCGTATCCTGGTCCTCCTCCGAATCCGTTTCCTGGTCCTCCACCGAATCCTCCACGTCCGAACTGTCCTGGACCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>336 265 234 155 10</canonical_bands>
                <polymorphic_bands>420 336 234 10</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGCGA</site>
                <isoschizomers>
                    <enzyme>Bsp68I</enzyme>
                    <enzyme>NruI</enzyme>
                </isoschizomers>
                <canonical_bands>499 346 155</canonical_bands>
                <polymorphic_bands>654 346</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>443 345 115 57 40</canonical_bands>
                <polymorphic_bands>443 345 115 97</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCTGACTTTATGAACAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CATTGGAAAAATGACTACAGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTYGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14535</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>247336</contig_pos>
        <strand>+</strand>
        <context>GTTTTCGTTA[C/T]ATTTCTAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTA</left_flank>
        <right_flank>ATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACCAACCGATAACCTCAAGATTGGTTTTGGATTCGTGATATAGACAGTGTAAAGAGGAATGACGTCAGCTTTTCGGTGAAAATGTTTGTCTTTTTCTTCTGTCCATTTCACGAACAGGTAGGGTTTGATATTGGGCGATTTTTTTTTCTGGGCAATTTTTTTTTGGGGGATGAAGGCAGAAAACAAAAAATATGTATCGACCTGATTTGAATAATGGTGGGTGATTTTTAGAGATATGCATAATCATTGATGATCACATTTGAAGAGAAAACTCGATTTTAATAAACGTATTGCTGAGAAGATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCACGTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAAAAAATTATTTTCCACCGCGGATGATGGTCTCCTTGATGATGGTTGGTCCTCCCCGTCCAAATCCTGGTCCTCCACCAAATCCGTTTCCTGGTCCACCTCCGAATCCTCCACGTCCACCATATCC</canonical>
            <polymorphic>AAACCAACCGATAACCTCAAGATTGGTTTTGGATTCGTGATATAGACAGTGTAAAGAGGAATGACGTCAGCTTTTCGGTGAAAATGTTTGTCTTTTTCTTCTGTCCATTTCACGAACAGGTAGGGTTTGATATTGGGCGATTTTTTTTTCTGGGCAATTTTTTTTTGGGGGATGAAGGCAGAAAACAAAAAATATGTATCGACCTGATTTGAATAATGGTGGGTGATTTTTAGAGATATGCATAATCATTGATGATCACATTTGAAGAGAAAACTCGATTTTAATAAACGTATTGCTGAGAAGATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTAYATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCACGTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAAAAAATTATTTTCCACCGCGGATGATGGTCTCCTTGATGATGGTTGGTCCTCCCCGTCCAAATCCTGGTCCTCCACCAAATCCGTTTCCTGGTCCACCTCCGAATCCTCCACGTCCACCATATCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>495 315 190</canonical_bands>
                <polymorphic_bands>810 190</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGATCACTATGACCGTACCTAA</pcr_primer_p1>
		<pcr_primer_p2>GCGTTTTGTTCATAAAGTCAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAACGC</canonical_amplicon>
		<polymorphic_amplicon>ATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTAYATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAACGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14536</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>247290</contig_pos>
        <strand>+</strand>
        <context>CGTAAAAATG[C/T]CTGAAAACGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATG</left_flank>
        <right_flank>CTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGTCACGGTCAAATCACACCGAATCCCCGCCTTTTTCATTCTGAAACCAACCGATAACCTCAAGATTGGTTTTGGATTCGTGATATAGACAGTGTAAAGAGGAATGACGTCAGCTTTTCGGTGAAAATGTTTGTCTTTTTCTTCTGTCCATTTCACGAACAGGTAGGGTTTGATATTGGGCGATTTTTTTTTCTGGGCAATTTTTTTTTGGGGGATGAAGGCAGAAAACAAAAAATATGTATCGACCTGATTTGAATAATGGTGGGTGATTTTTAGAGATATGCATAATCATTGATGATCACATTTGAAGAGAAAACTCGATTTTAATAAACGTATTGCTGAGAAGATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCACGTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAAAAAATTATTTTCCACCGCGGATGATGGTCTCCTTGATGATGGTTGGTCCTCCCCGTCCAAATCCTGGTCCTCCACCAA</canonical>
            <polymorphic>TTCTGTCACGGTCAAATCACACCGAATCCCCGCCTTTTTCATTCTGAAACCAACCGATAACCTCAAGATTGGTTTTGGATTCGTGATATAGACAGTGTAAAGAGGAATGACGTCAGCTTTTCGGTGAAAATGTTTGTCTTTTTCTTCTGTCCATTTCACGAACAGGTAGGGTTTGATATTGGGCGATTTTTTTTTCTGGGCAATTTTTTTTTGGGGGATGAAGGCAGAAAACAAAAAATATGTATCGACCTGATTTGAATAATGGTGGGTGATTTTTAGAGATATGCATAATCATTGATGATCACATTTGAAGAGAAAACTCGATTTTAATAAACGTATTGCTGAGAAGATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGYCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCACGTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAAAAAATTATTTTCCACCGCGGATGATGGTCTCCTTGATGATGGTTGGTCCTCCCCGTCCAAATCCTGGTCCTCCACCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>352 233 111 77 77 57 48 45</canonical_bands>
                <polymorphic_bands>352 233 134 111 77 48 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGATCACTATGACCGTACCTAA</pcr_primer_p1>
		<pcr_primer_p2>TTTGTTCATAAAGTCAGAGAAATG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAA</canonical_amplicon>
		<polymorphic_amplicon>ATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGYCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14538</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>247136</contig_pos>
        <strand>+</strand>
        <context>GTATTGCTGA[G/T]AAGATGATCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGATGATCACATTTGAAGAGAAAACTCGATTTTAATAAACGTATTGCTGA</left_flank>
        <right_flank>AAGATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTC</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTGATTGAATGGATAATTCGAATTTCAGAATGTTTACCTGGCAAGCCCAACAAGGGTGGCAAGCAGTGCAATAAAGAAATTGAAGTTCATATTTTGTAGGCGTTAAAACCTTCTAGAAACGTTTTATTTATATAGCGACCCCCAATTAGTTTCTGTCACGGTCAAATCACACCGAATCCCCGCCTTTTTCATTCTGAAACCAACCGATAACCTCAAGATTGGTTTTGGATTCGTGATATAGACAGTGTAAAGAGGAATGACGTCAGCTTTTCGGTGAAAATGTTTGTCTTTTTCTTCTGTCCATTTCACGAACAGGTAGGGTTTGATATTGGGCGATTTTTTTTTCTGGGCAATTTTTTTTTGGGGGATGAAGGCAGAAAACAAAAAATATGTATCGACCTGATTTGAATAATGGTGGGTGATTTTTAGAGATATGCATAATCATTGATGATCACATTTGAAGAGAAAACTCGATTTTAATAAACGTATTGCTGAGAAGATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTA</canonical>
            <polymorphic>AAATTTGATTGAATGGATAATTCGAATTTCAGAATGTTTACCTGGCAAGCCCAACAAGGGTGGCAAGCAGTGCAATAAAGAAATTGAAGTTCATATTTTGTAGGCGTTAAAACCTTCTAGAAACGTTTTATTTATATAGCGACCCCCAATTAGTTTCTGTCACGGTCAAATCACACCGAATCCCCGCCTTTTTCATTCTGAAACCAACCGATAACCTCAAGATTGGTTTTGGATTCGTGATATAGACAGTGTAAAGAGGAATGACGTCAGCTTTTCGGTGAAAATGTTTGTCTTTTTCTTCTGTCCATTTCACGAACAGGTAGGGTTTGATATTGGGCGATTTTTTTTTCTGGGCAATTTTTTTTTGGGGGATGAAGGCAGAAAACAAAAAATATGTATCGACCTGATTTGAATAATGGTGGGTGATTTTTAGAGATATGCATAATCATTGATGATCACATTTGAAGAGAAAACTCGATTTTAATAAACGTATTGCTGAKAAGATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>496 450 54</canonical_bands>
                <polymorphic_bands>550 450</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTATCGACCTGATTTGAATAAT</pcr_primer_p1>
		<pcr_primer_p2>CTCTATATTGCTGTTTTGACTAGC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTATCGACCTGATTTGAATAATGGTGGGTGATTTTTAGAGATATGCATAATCATTGATGATCACATTTGAAGAGAAAACTCGATTTTAATAAACGTATTGCTGAGAAGATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAG</canonical_amplicon>
		<polymorphic_amplicon>TGTATCGACCTGATTTGAATAATGGTGGGTGATTTTTAGAGATATGCATAATCATTGATGATCACATTTGAAGAGAAAACTCGATTTTAATAAACGTATTGCTGAKAAGATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14539</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>275350</contig_pos>
        <strand>+</strand>
        <context>GGGAAAATCT[C/T]WAAMAAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTGCTTCGCAAAACGCGGAGCCGATCCCCAGAATTGGTGGGAAAATCT</left_flank>
        <right_flank>TAAAAAAATTGTATTTTTTTTTGTTATTTTCCAGTGGTTTTGATTTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGGAACCAACGAAGGAGCCAACCGATGACGCAACCAATTATCGCCGCCAGTACAATGGCCCCGATACTTTTCACCATTGTCGCGAAGACAGCGTCTGGAAGAACAAAACACATGTTCTTTTTTTTCATTTTCAGAGAACCAATTTGTGCCTACCATGTGTATAAGTGACAGACGATGTTACGGAAAATATCAACAACGACGTAAAGTTATCAAAACAGCACGCAGCTGGAACCACATCAGGAATGTTCTGGATTGGAGGAAAATAAAATATGAATTTGTGTATGTATTTTGATTATTACTCACCTTCGTTGTTCCTATTCCTTGTTCTTTCAGCCGGAGCATCGTTGGCATGCCGACAGCTGGAGATACTGTAGCCACTACGAACCCACAAATAATGCCAAGTGAGATGGGAAAGTTGAAAAAGACGCAAGCAGTGAAACATATCGCAATTGCTTCGCAAAACGCGGAGCCGATCCCCAGAATTGGTGGGAAAATCTTTAAAAAAATTGTATTTTTTTTTGTTATTTTCCAGTGGTTTTGATTTTTTTTTGCTTCGTCATGATAGTTTTGGTTTCGAACAACTTAAGCCTTATAAAGCTGGAAAATAATGGGGGATAATGACTTTGAAAATCAAACAGCACAAAAAAGGCATAAACAGTTTTAGATTACTGTTTTCGTGGTTTTCGAATATGATTTCTCTACATATTTTGTGCAAAAAAAAACCAAAAGTTTAAAACGGCAAGTTTGAATACTGTAAAACTTGTAGTAGAAAAGATTTCAAACTTTTGACTTCCAATCGATTTATCTCGAATCCTGTTTAAAAGATGAAAATTTTGTCAACTGATGAATTATTTATCATATCATCATCGTTTTATCAGTTTACAGATTTTTGGAATCTCTCACAGGAACCGAGATAATTTAGCTCAAACCTGACACTTACTTTTTTCGTAGTAAGTGTATTTCCAAAATTTGACCCTAACGTACGTTTTTCATGTGAA</canonical>
            <polymorphic>TTGGGAACCAACGAAGGAGCCAACCGATGACGCAACCAATTATCGCCGCCAGTACAATGGCCCCGATACTTTTCACCATTGTCGCGAAGACAGCGTCTGGAAGAACAAAACACATGTTCTTTTTTTTCATTTTCAGAGAACCAATTTGTGCCTACCATGTGTATAAGTGACAGACGATGTTACGGAAAATATCAACAACGACGTAAAGTTATCAAAACAGCACGCAGCTGGAACCACATCAGGAATGTTCTGGATTGGAGGAAAATAAAATATGAATTTGTGTATGTATTTTGATTATTACTCACCTTCGTTGTTCCTATTCCTTGTTCTTTCAGCCGGAGCATCGTTGGCATGCCGACAGCTGGAGATACTGTAGCCACTACGAACCCACAAATAATGCCAAGTGAGATGGGAAAGTTGAAAAAGACGCAAGCAGTGAAACATATCGCAATTGCTTCGCAAAACGCGGAGCCGATCCCCAGAATTGGTGGGAAAATCTYTAAAAAAATTGTATTTTTTTTTGTTATTTTCCAGTGGTTTTGATTTTTTTTTGCTTCGTCATGATAGTTTTGGTTTCGAACAACTTAAGCCTTATAAAGCTGGAAAATAATGGGGGATAATGACTTTGAAAATCAAACAGCACAAAAAAGGCATAAACAGTTTTAGATTACTGTTTTCGTGGTTTTCGAATATGATTTCTCTACATATTTTGTGCAAAAAAAAACCAAAAGTTTAAAACGGCAAGTTTGAATACTGTAAAACTTGTAGTAGAAAAGATTTCAAACTTTTGACTTCCAATCGATTTATCTCGAATCCTGTTTAAAAGATGAAAATTTTGTCAACTGATGAATTATTTATCATATCATCATCGTTTTATCAGTTTACAGATTTTTGGAATCTCTCACAGGAACCGAGATAATTTAGCTCAAACCTGACACTTACTTTTTTCGTAGTAAGTGTATTTCCAAAATTTGACCCTAACGTACGTTTTTCATGTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 233 179 87</canonical_bands>
                <polymorphic_bands>734 179 87</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>500 180 148 87 85</canonical_bands>
                <polymorphic_bands>585 180 148 87</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATACTGTAGCCACTACGAACC</pcr_primer_p1>
		<pcr_primer_p2>CCCATTATTTTCCAGCTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATACTGTAGCCACTACGAACCCACAAATAATGCCAAGTGAGATGGGAAAGTTGAAAAAGACGCAAGCAGTGAAACATATCGCAATTGCTTCGCAAAACGCGGAGCCGATCCCCAGAATTGGTGGGAAAATCTTTAAAAAAATTGTATTTTTTTTTGTTATTTTCCAGTGGTTTTGATTTTTTTTTGCTTCGTCATGATAGTTTTGGTTTCGAACAACTTAAGCCTTATAAAGCTGGAAAATAATGGG</canonical_amplicon>
		<polymorphic_amplicon>GATACTGTAGCCACTACGAACCCACAAATAATGCCAAGTGAGATGGGAAAGTTGAAAAAGACGCAAGCAGTGAAACATATCGCAATTGCTTCGCAAAACGCGGAGCCGATCCCCAGAATTGGTGGGAAAATCTYTAAAAAAATTGTATTTTTTTTTGTTATTTTCCAGTGGTTTTGATTTTTTTTTGCTTCGTCATGATAGTTTTGGTTTCGAACAACTTAAGCCTTATAAAGCTGGAAAATAATGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14540</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>275351</contig_pos>
        <strand>+</strand>
        <context>GGAAAATCTY[A/T]AAMAAAATTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTGCTTCGCAAAACGCGGAGCCGATCCCCAGAATTGGTGGGAAAATCTT</left_flank>
        <right_flank>AAAAAAATTGTATTTTTTTTTGTTATTTTCCAGTGGTTTTGATTTTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGGAACCAACGAAGGAGCCAACCGATGACGCAACCAATTATCGCCGCCAGTACAATGGCCCCGATACTTTTCACCATTGTCGCGAAGACAGCGTCTGGAAGAACAAAACACATGTTCTTTTTTTTCATTTTCAGAGAACCAATTTGTGCCTACCATGTGTATAAGTGACAGACGATGTTACGGAAAATATCAACAACGACGTAAAGTTATCAAAACAGCACGCAGCTGGAACCACATCAGGAATGTTCTGGATTGGAGGAAAATAAAATATGAATTTGTGTATGTATTTTGATTATTACTCACCTTCGTTGTTCCTATTCCTTGTTCTTTCAGCCGGAGCATCGTTGGCATGCCGACAGCTGGAGATACTGTAGCCACTACGAACCCACAAATAATGCCAAGTGAGATGGGAAAGTTGAAAAAGACGCAAGCAGTGAAACATATCGCAATTGCTTCGCAAAACGCGGAGCCGATCCCCAGAATTGGTGGGAAAATCTTTAAAAAAATTGTATTTTTTTTTGTTATTTTCCAGTGGTTTTGATTTTTTTTTGCTTCGTCATGATAGTTTTGGTTTCGAACAACTTAAGCCTTATAAAGCTGGAAAATAATGGGGGATAATGACTTTGAAAATCAAACAGCACAAAAAAGGCATAAACAGTTTTAGATTACTGTTTTCGTGGTTTTCGAATATGATTTCTCTACATATTTTGTGCAAAAAAAAACCAAAAGTTTAAAACGGCAAGTTTGAATACTGTAAAACTTGTAGTAGAAAAGATTTCAAACTTTTGACTTCCAATCGATTTATCTCGAATCCTGTTTAAAAGATGAAAATTTTGTCAACTGATGAATTATTTATCATATCATCATCGTTTTATCAGTTTACAGATTTTTGGAATCTCTCACAGGAACCGAGATAATTTAGCTCAAACCTGACACTTACTTTTTTCGTAGTAAGTGTATTTCCAAAATTTGACCCTAACGTACGTTTTTCATGTGAAA</canonical>
            <polymorphic>TGGGAACCAACGAAGGAGCCAACCGATGACGCAACCAATTATCGCCGCCAGTACAATGGCCCCGATACTTTTCACCATTGTCGCGAAGACAGCGTCTGGAAGAACAAAACACATGTTCTTTTTTTTCATTTTCAGAGAACCAATTTGTGCCTACCATGTGTATAAGTGACAGACGATGTTACGGAAAATATCAACAACGACGTAAAGTTATCAAAACAGCACGCAGCTGGAACCACATCAGGAATGTTCTGGATTGGAGGAAAATAAAATATGAATTTGTGTATGTATTTTGATTATTACTCACCTTCGTTGTTCCTATTCCTTGTTCTTTCAGCCGGAGCATCGTTGGCATGCCGACAGCTGGAGATACTGTAGCCACTACGAACCCACAAATAATGCCAAGTGAGATGGGAAAGTTGAAAAAGACGCAAGCAGTGAAACATATCGCAATTGCTTCGCAAAACGCGGAGCCGATCCCCAGAATTGGTGGGAAAATCTTWAAAAAAATTGTATTTTTTTTTGTTATTTTCCAGTGGTTTTGATTTTTTTTTGCTTCGTCATGATAGTTTTGGTTTCGAACAACTTAAGCCTTATAAAGCTGGAAAATAATGGGGGATAATGACTTTGAAAATCAAACAGCACAAAAAAGGCATAAACAGTTTTAGATTACTGTTTTCGTGGTTTTCGAATATGATTTCTCTACATATTTTGTGCAAAAAAAAACCAAAAGTTTAAAACGGCAAGTTTGAATACTGTAAAACTTGTAGTAGAAAAGATTTCAAACTTTTGACTTCCAATCGATTTATCTCGAATCCTGTTTAAAAGATGAAAATTTTGTCAACTGATGAATTATTTATCATATCATCATCGTTTTATCAGTTTACAGATTTTTGGAATCTCTCACAGGAACCGAGATAATTTAGCTCAAACCTGACACTTACTTTTTTCGTAGTAAGTGTATTTCCAAAATTTGACCCTAACGTACGTTTTTCATGTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 233 180 87</canonical_bands>
                <polymorphic_bands>733 180 87</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>499 181 148 87 85</canonical_bands>
                <polymorphic_bands>584 181 148 87</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATACTGTAGCCACTACGAACC</pcr_primer_p1>
		<pcr_primer_p2>CCCATTATTTTCCAGCTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATACTGTAGCCACTACGAACCCACAAATAATGCCAAGTGAGATGGGAAAGTTGAAAAAGACGCAAGCAGTGAAACATATCGCAATTGCTTCGCAAAACGCGGAGCCGATCCCCAGAATTGGTGGGAAAATCTTTAAAAAAATTGTATTTTTTTTTGTTATTTTCCAGTGGTTTTGATTTTTTTTTGCTTCGTCATGATAGTTTTGGTTTCGAACAACTTAAGCCTTATAAAGCTGGAAAATAATGGG</canonical_amplicon>
		<polymorphic_amplicon>GATACTGTAGCCACTACGAACCCACAAATAATGCCAAGTGAGATGGGAAAGTTGAAAAAGACGCAAGCAGTGAAACATATCGCAATTGCTTCGCAAAACGCGGAGCCGATCCCCAGAATTGGTGGGAAAATCTTWAAAAAAATTGTATTTTTTTTTGTTATTTTCCAGTGGTTTTGATTTTTTTTTGCTTCGTCATGATAGTTTTGGTTTCGAACAACTTAAGCCTTATAAAGCTGGAAAATAATGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14541</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>275354</contig_pos>
        <strand>+</strand>
        <context>AAATCTYWAA[A/C]AAAATTGYAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCTTCGCAAAACGCGGAGCCGATCCCCAGAATTGGTGGGAAAATCTTTAA</left_flank>
        <right_flank>AAAATTGTATTTTTTTTTGTTATTTTCCAGTGGTTTTGATTTTTTTTTGC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACCAACGAAGGAGCCAACCGATGACGCAACCAATTATCGCCGCCAGTACAATGGCCCCGATACTTTTCACCATTGTCGCGAAGACAGCGTCTGGAAGAACAAAACACATGTTCTTTTTTTTCATTTTCAGAGAACCAATTTGTGCCTACCATGTGTATAAGTGACAGACGATGTTACGGAAAATATCAACAACGACGTAAAGTTATCAAAACAGCACGCAGCTGGAACCACATCAGGAATGTTCTGGATTGGAGGAAAATAAAATATGAATTTGTGTATGTATTTTGATTATTACTCACCTTCGTTGTTCCTATTCCTTGTTCTTTCAGCCGGAGCATCGTTGGCATGCCGACAGCTGGAGATACTGTAGCCACTACGAACCCACAAATAATGCCAAGTGAGATGGGAAAGTTGAAAAAGACGCAAGCAGTGAAACATATCGCAATTGCTTCGCAAAACGCGGAGCCGATCCCCAGAATTGGTGGGAAAATCTTTAAAAAAATTGTATTTTTTTTTGTTATTTTCCAGTGGTTTTGATTTTTTTTTGCTTCGTCATGATAGTTTTGGTTTCGAACAACTTAAGCCTTATAAAGCTGGAAAATAATGGGGGATAATGACTTTGAAAATCAAACAGCACAAAAAAGGCATAAACAGTTTTAGATTACTGTTTTCGTGGTTTTCGAATATGATTTCTCTACATATTTTGTGCAAAAAAAAACCAAAAGTTTAAAACGGCAAGTTTGAATACTGTAAAACTTGTAGTAGAAAAGATTTCAAACTTTTGACTTCCAATCGATTTATCTCGAATCCTGTTTAAAAGATGAAAATTTTGTCAACTGATGAATTATTTATCATATCATCATCGTTTTATCAGTTTACAGATTTTTGGAATCTCTCACAGGAACCGAGATAATTTAGCTCAAACCTGACACTTACTTTTTTCGTAGTAAGTGTATTTCCAAAATTTGACCCTAACGTACGTTTTTCATGTGAAAAAG</canonical>
            <polymorphic>GAACCAACGAAGGAGCCAACCGATGACGCAACCAATTATCGCCGCCAGTACAATGGCCCCGATACTTTTCACCATTGTCGCGAAGACAGCGTCTGGAAGAACAAAACACATGTTCTTTTTTTTCATTTTCAGAGAACCAATTTGTGCCTACCATGTGTATAAGTGACAGACGATGTTACGGAAAATATCAACAACGACGTAAAGTTATCAAAACAGCACGCAGCTGGAACCACATCAGGAATGTTCTGGATTGGAGGAAAATAAAATATGAATTTGTGTATGTATTTTGATTATTACTCACCTTCGTTGTTCCTATTCCTTGTTCTTTCAGCCGGAGCATCGTTGGCATGCCGACAGCTGGAGATACTGTAGCCACTACGAACCCACAAATAATGCCAAGTGAGATGGGAAAGTTGAAAAAGACGCAAGCAGTGAAACATATCGCAATTGCTTCGCAAAACGCGGAGCCGATCCCCAGAATTGGTGGGAAAATCTTTAAMAAAATTGTATTTTTTTTTGTTATTTTCCAGTGGTTTTGATTTTTTTTTGCTTCGTCATGATAGTTTTGGTTTCGAACAACTTAAGCCTTATAAAGCTGGAAAATAATGGGGGATAATGACTTTGAAAATCAAACAGCACAAAAAAGGCATAAACAGTTTTAGATTACTGTTTTCGTGGTTTTCGAATATGATTTCTCTACATATTTTGTGCAAAAAAAAACCAAAAGTTTAAAACGGCAAGTTTGAATACTGTAAAACTTGTAGTAGAAAAGATTTCAAACTTTTGACTTCCAATCGATTTATCTCGAATCCTGTTTAAAAGATGAAAATTTTGTCAACTGATGAATTATTTATCATATCATCATCGTTTTATCAGTTTACAGATTTTTGGAATCTCTCACAGGAACCGAGATAATTTAGCTCAAACCTGACACTTACTTTTTTCGTAGTAAGTGTATTTCCAAAATTTGACCCTAACGTACGTTTTTCATGTGAAAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>497 233 183 87</canonical_bands>
                <polymorphic_bands>730 183 87</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATACTGTAGCCACTACGAACC</pcr_primer_p1>
		<pcr_primer_p2>CCCATTATTTTCCAGCTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATACTGTAGCCACTACGAACCCACAAATAATGCCAAGTGAGATGGGAAAGTTGAAAAAGACGCAAGCAGTGAAACATATCGCAATTGCTTCGCAAAACGCGGAGCCGATCCCCAGAATTGGTGGGAAAATCTTTAAAAAAATTGTATTTTTTTTTGTTATTTTCCAGTGGTTTTGATTTTTTTTTGCTTCGTCATGATAGTTTTGGTTTCGAACAACTTAAGCCTTATAAAGCTGGAAAATAATGGG</canonical_amplicon>
		<polymorphic_amplicon>GATACTGTAGCCACTACGAACCCACAAATAATGCCAAGTGAGATGGGAAAGTTGAAAAAGACGCAAGCAGTGAAACATATCGCAATTGCTTCGCAAAACGCGGAGCCGATCCCCAGAATTGGTGGGAAAATCTTTAAMAAAATTGTATTTTTTTTTGTTATTTTCCAGTGGTTTTGATTTTTTTTTGCTTCGTCATGATAGTTTTGGTTTCGAACAACTTAAGCCTTATAAAGCTGGAAAATAATGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14543</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>275515</contig_pos>
        <strand>+</strand>
        <context>AAACAGTTTT[A/G]GATTACTGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGATAATGACTTTGAAAATCAAACAGCACAAAAAAGGCATAAACAGTTTT</left_flank>
        <right_flank>GATTACTGTTTTCGTGGTTTTCGAATATGATTTCTCTACATATTTTGTGC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGACAGACGATGTTACGGAAAATATCAACAACGACGTAAAGTTATCAAAACAGCACGCAGCTGGAACCACATCAGGAATGTTCTGGATTGGAGGAAAATAAAATATGAATTTGTGTATGTATTTTGATTATTACTCACCTTCGTTGTTCCTATTCCTTGTTCTTTCAGCCGGAGCATCGTTGGCATGCCGACAGCTGGAGATACTGTAGCCACTACGAACCCACAAATAATGCCAAGTGAGATGGGAAAGTTGAAAAAGACGCAAGCAGTGAAACATATCGCAATTGCTTCGCAAAACGCGGAGCCGATCCCCAGAATTGGTGGGAAAATCTTTAAAAAAATTGTATTTTTTTTTGTTATTTTCCAGTGGTTTTGATTTTTTTTTGCTTCGTCATGATAGTTTTGGTTTCGAACAACTTAAGCCTTATAAAGCTGGAAAATAATGGGGGATAATGACTTTGAAAATCAAACAGCACAAAAAAGGCATAAACAGTTTTAGATTACTGTTTTCGTGGTTTTCGAATATGATTTCTCTACATATTTTGTGCAAAAAAAAACCAAAAGTTTAAAACGGCAAGTTTGAATACTGTAAAACTTGTAGTAGAAAAGATTTCAAACTTTTGACTTCCAATCGATTTATCTCGAATCCTGTTTAAAAGATGAAAATTTTGTCAACTGATGAATTATTTATCATATCATCATCGTTTTATCAGTTTACAGATTTTTGGAATCTCTCACAGGAACCGAGATAATTTAGCTCAAACCTGACACTTACTTTTTTCGTAGTAAGTGTATTTCCAAAATTTGACCCTAACGTACGTTTTTCATGTGAAAAAGAAGTATCAATATGCCAAATATGTCTTAAACTCAATGAAAATCTGAGAAAAAAGCTTTAAAACGGAAATCGTCTTTTTTAAAAGACATTTTCAAAGGGAACATGGTCAAGTTTTGGAAAAAAAACACTATTTTCAAATATCGGAATTATCAAAATTTGTATG</canonical>
            <polymorphic>AGTGACAGACGATGTTACGGAAAATATCAACAACGACGTAAAGTTATCAAAACAGCACGCAGCTGGAACCACATCAGGAATGTTCTGGATTGGAGGAAAATAAAATATGAATTTGTGTATGTATTTTGATTATTACTCACCTTCGTTGTTCCTATTCCTTGTTCTTTCAGCCGGAGCATCGTTGGCATGCCGACAGCTGGAGATACTGTAGCCACTACGAACCCACAAATAATGCCAAGTGAGATGGGAAAGTTGAAAAAGACGCAAGCAGTGAAACATATCGCAATTGCTTCGCAAAACGCGGAGCCGATCCCCAGAATTGGTGGGAAAATCTTTAAAAAAATTGTATTTTTTTTTGTTATTTTCCAGTGGTTTTGATTTTTTTTTGCTTCGTCATGATAGTTTTGGTTTCGAACAACTTAAGCCTTATAAAGCTGGAAAATAATGGGGGATAATGACTTTGAAAATCAAACAGCACAAAAAAGGCATAAACAGTTTTRGATTACTGTTTTCGTGGTTTTCGAATATGATTTCTCTACATATTTTGTGCAAAAAAAAACCAAAAGTTTAAAACGGCAAGTTTGAATACTGTAAAACTTGTAGTAGAAAAGATTTCAAACTTTTGACTTCCAATCGATTTATCTCGAATCCTGTTTAAAAGATGAAAATTTTGTCAACTGATGAATTATTTATCATATCATCATCGTTTTATCAGTTTACAGATTTTTGGAATCTCTCACAGGAACCGAGATAATTTAGCTCAAACCTGACACTTACTTTTTTCGTAGTAAGTGTATTTCCAAAATTTGACCCTAACGTACGTTTTTCATGTGAAAAAGAAGTATCAATATGCCAAATATGTCTTAAACTCAATGAAAATCTGAGAAAAAAGCTTTAAAACGGAAATCGTCTTTTTTAAAAGACATTTTCAAAGGGAACATGGTCAAGTTTTGGAAAAAAAACACTATTTTCAAATATCGGAATTATCAAAATTTGTATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTTATTTTCCAGTGGTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAAACTTGCCGTTTTAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>TTTGTTATTTTCCAGTGGTTTTGATTTTTTTTTGCTTCGTCATGATAGTTTTGGTTTCGAACAACTTAAGCCTTATAAAGCTGGAAAATAATGGGGGATAATGACTTTGAAAATCAAACAGCACAAAAAAGGCATAAACAGTTTTAGATTACTGTTTTCGTGGTTTTCGAATATGATTTCTCTACATATTTTGTGCAAAAAAAAACCAAAAGTTTAAAACGGCAAGTTTG</canonical_amplicon>
		<polymorphic_amplicon>TTTGTTATTTTCCAGTGGTTTTGATTTTTTTTTGCTTCGTCATGATAGTTTTGGTTTCGAACAACTTAAGCCTTATAAAGCTGGAAAATAATGGGGGATAATGACTTTGAAAATCAAACAGCACAAAAAAGGCATAAACAGTTTTRGATTACTGTTTTCGTGGTTTTCGAATATGATTTCTCTACATATTTTGTGCAAAAAAAAACCAAAAGTTTAAAACGGCAAGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14544</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>278093</contig_pos>
        <strand>+</strand>
        <context>CCAAATCCGA[A/G]ACCTATTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATTTTGAGCTATTCTTTTTTTCCGAATCTGAAAATATCCCAAATCCGA</left_flank>
        <right_flank>ACCTATTTCTGGTGGAAGATCTATAAGAAAATTTTGTGAATGTTCTATGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTCAGGTGGTTCATGATATCACTTTGTTGAAAAATTGGAATTGTGTAAAGAAGAGAAATGAATTTTCAGAGTTTCTCGGAAAATCCCTTTGGTAATTTTTTTAGGTTTGGTGTCTTGAACATTTCCTGGTCTCTTCGTCGTCATAGAAAGCTGATTTCTCTTTATTATATGTTCATTTCCTCGTGGGTTTCCGATGGTCATGATGATGTAACGGCGTCAAAATCGTATCAATTCTTGTCTGCCTTATGAAAATCTCCTTGACGAGCGGGATGAAAAAAGATGGACAAGGTTTGCAGGAGATCAGGCGCAACAACGAGATAATGAAAAAGTTTTAACCGCATTCACAACCCATTAGTCACAGATTCATATATTGTCTCCGCGACCCGCTTTTTCCTATTTTTTTTTGACTTGTGTTTTTTTTTCATTTGCCTCTTTTTTTTTGGTTTTATTTTGAGCTATTCTTTTTTTCCGAATCTGAAAATATCCCAAATCCGAGACCTATTTCTGGTGGAAGATCTATAAGAAAATTTTGTGAATGTTCTATGACCTACCTTTCAATAAATTATGGTGGTCAAGAAACAAAATGATTCACAACTATGCTATCTCTAGCGGTTTTCTCAATTACCATTCCCCATAAACAACAAAAAAACCGTTTCCTTGTTTATAACCGTAACTTTCTCCATTCATTCAGTTCTTTTTTCTATTTTTTCTGACATATAGTATAGTTGTGATTGATGTCTTAGTCTCTGAACTCTATACGTTTCTCAAATCACTAATAAAAGAGACATTTGGGGTTTTTTCTCACGCCCAGAAAACTTGATTCGAAATTGACTTGAAACTTTTTTCGTAACGTTTTTAAAAGTTTCTCACACTCGGGAGACACACCTTGATATGTACCCGTAATGTATTATCTTTTGACTTTTCCCAAATTTTTTACGCAAGAAGAAGGTCACTTGAGACTTTTAGGTTTTTAGGTTTTATGTACTTACGATTTTT</canonical>
            <polymorphic>TTTTTTCAGGTGGTTCATGATATCACTTTGTTGAAAAATTGGAATTGTGTAAAGAAGAGAAATGAATTTTCAGAGTTTCTCGGAAAATCCCTTTGGTAATTTTTTTAGGTTTGGTGTCTTGAACATTTCCTGGTCTCTTCGTCGTCATAGAAAGCTGATTTCTCTTTATTATATGTTCATTTCCTCGTGGGTTTCCGATGGTCATGATGATGTAACGGCGTCAAAATCGTATCAATTCTTGTCTGCCTTATGAAAATCTCCTTGACGAGCGGGATGAAAAAAGATGGACAAGGTTTGCAGGAGATCAGGCGCAACAACGAGATAATGAAAAAGTTTTAACCGCATTCACAACCCATTAGTCACAGATTCATATATTGTCTCCGCGACCCGCTTTTTCCTATTTTTTTTTGACTTGTGTTTTTTTTTCATTTGCCTCTTTTTTTTTGGTTTTATTTTGAGCTATTCTTTTTTTCCGAATCTGAAAATATCCCAAATCCGARACCTATTTCTGGTGGAAGATCTATAAGAAAATTTTGTGAATGTTCTATGACCTACCTTTCAATAAATTATGGTGGTCAAGAAACAAAATGATTCACAACTATGCTATCTCTAGCGGTTTTCTCAATTACCATTCCCCATAAACAACAAAAAAACCGTTTCCTTGTTTATAACCGTAACTTTCTCCATTCATTCAGTTCTTTTTTCTATTTTTTCTGACATATAGTATAGTTGTGATTGATGTCTTAGTCTCTGAACTCTATACGTTTCTCAAATCACTAATAAAAGAGACATTTGGGGTTTTTTCTCACGCCCAGAAAACTTGATTCGAAATTGACTTGAAACTTTTTTCGTAACGTTTTTAAAAGTTTCTCACACTCGGGAGACACACCTTGATATGTACCCGTAATGTATTATCTTTTGACTTTTCCCAAATTTTTTACGCAAGAAGAAGGTCACTTGAGACTTTTAGGTTTTTAGGTTTTATGTACTTACGATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACAACGAGATAATGAAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TGAAAGGTAGGTCATAGAACATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAACAACGAGATAATGAAAAAGTTTTAACCGCATTCACAACCCATTAGTCACAGATTCATATATTGTCTCCGCGACCCGCTTTTTCCTATTTTTTTTTGACTTGTGTTTTTTTTTCATTTGCCTCTTTTTTTTTGGTTTTATTTTGAGCTATTCTTTTTTTCCGAATCTGAAAATATCCCAAATCCGAGACCTATTTCTGGTGGAAGATCTATAAGAAAATTTTGTGAATGTTCTATGACCTACCTTTCA</canonical_amplicon>
		<polymorphic_amplicon>CAACAACGAGATAATGAAAAAGTTTTAACCGCATTCACAACCCATTAGTCACAGATTCATATATTGTCTCCGCGACCCGCTTTTTCCTATTTTTTTTTGACTTGTGTTTTTTTTTCATTTGCCTCTTTTTTTTTGGTTTTATTTTGAGCTATTCTTTTTTTCCGAATCTGAAAATATCCCAAATCCGARACCTATTTCTGGTGGAAGATCTATAAGAAAATTTTGTGAATGTTCTATGACCTACCTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14545</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>309244</contig_pos>
        <strand></strand>
        <context>agacatttgg[G/A]tgaataaccg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TATTTCTGTTAAAGATATCAAAAAGGTGCTAGGTGATAAAAGACATTTGG</left_flank>
        <right_flank>TGAATAACCGAGCAGTTGCCAATTTTTTAATATCGTCAACGGGAATCGAG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTCAAAATCGAGCATGTTTACTCGTAGAAGAGAATGCTATATTTTCGTTATTTCAGAAAAAAAAGTCAAACTTGAAATCTTAAAAAAATAATCGAAAACGCTTCAATTTGTTTGAAAGTTACGCAATACGCCAACCATCATAAGAGCTTTGTTATTGACCACTGTTTTGTACAAATTCAACCAAGCGATATGAAGCGGAACAGAGGCATTTTCGACAATTTTTTGGTTAAGATGATATATCTCATCAGAATAGAGCTTGCTTGGCTCTAAAATTTTTATGCACTACAATGAAATTCTATTATTTAATAAACTCTGATCCTTTTAGAGCAATGCGAAAAGTCTTAACTTTATTCTGGGATTTGTATAATTGATTAATTTCTTCTGAAAATATCGTCTTTCATATAAACGAGGCTCAAATCAACTGTCAATTTTTAGCTTCATTAGCTCTATTTCTGTTAAAGATATCAAAAAGGTGCTAGGTGATAAAAGACATTTGGGTGAATAACCGAGCAGTTGCCAATTTTTTAATATCGTCAACGGGAATCGAGATAATTGAGCTCAAAAATATTATATTTGTCATCTGGTTCTCTGCTAAAATATTAACTTTCAAACTTTTCCATAATACAATTTAGGGTCACAAATTTAAGAGTAACACTATTTTAGTTCAATCTGGTACCACAGTGTCCTTGAACACCCTCTTTTCCTTCTTGCGACAAACAGTAATCAATCACTTTCCTAGAATCAAATTAAGACACCAGCCTTCCAACGTTTACCCGTCGGTGATACGATACTGACAAGTTGTTTTTCTTAGCGAAACACCTAATTTTTTCTTTCTTTGTTTGAAACTTGGAAACTATATATTTATTAAAATTTTTGGTCAACCTAGAAAATAAGCAGGTCAACCTGAGATTAGAAATTTAGAAATTGAGGGGGAAATTGTGTGAATTGGACCGTAAATTCGAGAAATCGTGTTCCCTTTCCCCGCACACACCGATGTT</canonical>
            <polymorphic>TATTCAAAATCGAGCATGTTTACTCGTAGAAGAGAATGCTATATTTTCGTTATTTCAGAAAAAAAAGTCAAACTTGAAATCTTAAAAAAATAATCGAAAACGCTTCAATTTGTTTGAAAGTTACGCAATACGCCAACCATCATAAGAGCTTTGTTATTGACCACTGTTTTGTACAAATTCAACCAAGCGATATGAAGCGGAACAGAGGCATTTTCGACAATTTTTTGGTTAAGATGATATATCTCATCAGAATAGAGCTTGCTTGGCTCTAAAATTTTTATGCACTACAATGAAATTCTATTATTTAATAAACTCTGATCCTTTTAGAGCAATGCGAAAAGTCTTAACTTTATTCTGGGATTTGTATAATTGATTAATTTCTTCTGAAAATATCGTCTTTCATATAAACGAGGCTCAAATCAACTGTCAATTTTTAGCTTCATTAGCTCTATTTCTGTTAAAGATATCAAAAAGGTGCTAGGTGATAAAAGACATTTGGRTGAATAACCGAGCAGTTGCCAATTTTTTAATATCGTCAACGGGAATCGAGATAATTGAGCTCAAAAATATTATATTTGTCATCTGGTTCTCTGCTAAAATATTAACTTTCAAACTTTTCCATAATACAATTTAGGGTCACAAATTTAAGAGTAACACTATTTTAGTTCAATCTGGTACCACAGTGTCCTTGAACACCCTCTTTTCCTTCTTGCGACAAACAGTAATCAATCACTTTCCTAGAATCAAATTAAGACACCAGCCTTCCAACGTTTACCCGTCGGTGATACGATACTGACAAGTTGTTTTTCTTAGCGAAACACCTAATTTTTTCTTTCTTTGTTTGAAACTTGGAAACTATATATTTATTAAAATTTTTGGTCAACCTAGAAAATAAGCAGGTCAACCTGAGATTAGAAATTTAGAAATTGAGGGGGAAATTGTGTGAATTGGACCGTAAATTCGAGAAATCGTGTTCCCTTTCCCCGCACACACCGATGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>193 163 137 123 121 37 36 28 28 24 24 18 17 15 10 8 7 5 2 2 2</canonical_bands>
                <polymorphic_bands>193 163 155 123 121 37 36 28 28 24 24 17 15 10 8 7 5 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>496 287 210 7</canonical_bands>
                <polymorphic_bands>706 287 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATATAAACGAGGCTCAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAATTTGTGACCCTAAATTGTATT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCATATAAACGAGGCTCAAATCAACTGTCAATTTTTAGCTTCATTAGCTCTATTTCTGTTAAAGATATCAAAAAGGTGCTAGGTGATAAAAGACATTTGGGTGAATAACCGAGCAGTTGCCAATTTTTTAATATCGTCAACGGGAATCGAGATAATTGAGCTCAAAAATATTATATTTGTCATCTGGTTCTCTGCTAAAATATTAACTTTCAAACTTTTCCATAATACAATTTAGGGTCACAAATTT</canonical_amplicon>
		<polymorphic_amplicon>TCATATAAACGAGGCTCAAATCAACTGTCAATTTTTAGCTTCATTAGCTCTATTTCTGTTAAAGATATCAAAAAGGTGCTAGGTGATAAAAGACATTTGGRTGAATAACCGAGCAGTTGCCAATTTTTTAATATCGTCAACGGGAATCGAGATAATTGAGCTCAAAAATATTATATTTGTCATCTGGTTCTCTGCTAAAATATTAACTTTCAAACTTTTCCATAATACAATTTAGGGTCACAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14546</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>309322</contig_pos>
        <strand>+</strand>
        <context>TATTATATTT[C/G]WCATCTGGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAATATCGTCAACGGGAATCGAGATAATTGAGCTCAAAAATATTATATTT</left_flank>
        <right_flank>TCATCTGGTTCTCTGCTAAAATATTAACTTTCAAACTTTTCCATAATACA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTTAAAAAAATAATCGAAAACGCTTCAATTTGTTTGAAAGTTACGCAATACGCCAACCATCATAAGAGCTTTGTTATTGACCACTGTTTTGTACAAATTCAACCAAGCGATATGAAGCGGAACAGAGGCATTTTCGACAATTTTTTGGTTAAGATGATATATCTCATCAGAATAGAGCTTGCTTGGCTCTAAAATTTTTATGCACTACAATGAAATTCTATTATTTAATAAACTCTGATCCTTTTAGAGCAATGCGAAAAGTCTTAACTTTATTCTGGGATTTGTATAATTGATTAATTTCTTCTGAAAATATCGTCTTTCATATAAACGAGGCTCAAATCAACTGTCAATTTTTAGCTTCATTAGCTCTATTTCTGTTAAAGATATCAAAAAGGTGCTAGGTGATAAAAGACATTTGGGTGAATAACCGAGCAGTTGCCAATTTTTTAATATCGTCAACGGGAATCGAGATAATTGAGCTCAAAAATATTATATTTGTCATCTGGTTCTCTGCTAAAATATTAACTTTCAAACTTTTCCATAATACAATTTAGGGTCACAAATTTAAGAGTAACACTATTTTAGTTCAATCTGGTACCACAGTGTCCTTGAACACCCTCTTTTCCTTCTTGCGACAAACAGTAATCAATCACTTTCCTAGAATCAAATTAAGACACCAGCCTTCCAACGTTTACCCGTCGGTGATACGATACTGACAAGTTGTTTTTCTTAGCGAAACACCTAATTTTTTCTTTCTTTGTTTGAAACTTGGAAACTATATATTTATTAAAATTTTTGGTCAACCTAGAAAATAAGCAGGTCAACCTGAGATTAGAAATTTAGAAATTGAGGGGGAAATTGTGTGAATTGGACCGTAAATTCGAGAAATCGTGTTCCCTTTCCCCGCACACACCGATGTTATGTTAATGAATGATATGAATCTATTCGAATTTCGGTTTTCACTTCTTCTCGACCAATAGAGATATTAGCCACTTTTT</canonical>
            <polymorphic>ATCTTAAAAAAATAATCGAAAACGCTTCAATTTGTTTGAAAGTTACGCAATACGCCAACCATCATAAGAGCTTTGTTATTGACCACTGTTTTGTACAAATTCAACCAAGCGATATGAAGCGGAACAGAGGCATTTTCGACAATTTTTTGGTTAAGATGATATATCTCATCAGAATAGAGCTTGCTTGGCTCTAAAATTTTTATGCACTACAATGAAATTCTATTATTTAATAAACTCTGATCCTTTTAGAGCAATGCGAAAAGTCTTAACTTTATTCTGGGATTTGTATAATTGATTAATTTCTTCTGAAAATATCGTCTTTCATATAAACGAGGCTCAAATCAACTGTCAATTTTTAGCTTCATTAGCTCTATTTCTGTTAAAGATATCAAAAAGGTGCTAGGTGATAAAAGACATTTGGGTGAATAACCGAGCAGTTGCCAATTTTTTAATATCGTCAACGGGAATCGAGATAATTGAGCTCAAAAATATTATATTTSTCATCTGGTTCTCTGCTAAAATATTAACTTTCAAACTTTTCCATAATACAATTTAGGGTCACAAATTTAAGAGTAACACTATTTTAGTTCAATCTGGTACCACAGTGTCCTTGAACACCCTCTTTTCCTTCTTGCGACAAACAGTAATCAATCACTTTCCTAGAATCAAATTAAGACACCAGCCTTCCAACGTTTACCCGTCGGTGATACGATACTGACAAGTTGTTTTTCTTAGCGAAACACCTAATTTTTTCTTTCTTTGTTTGAAACTTGGAAACTATATATTTATTAAAATTTTTGGTCAACCTAGAAAATAAGCAGGTCAACCTGAGATTAGAAATTTAGAAATTGAGGGGGAAATTGTGTGAATTGGACCGTAAATTCGAGAAATCGTGTTCCCTTTCCCCGCACACACCGATGTTATGTTAATGAATGATATGAATCTATTCGAATTTCGGTTTTCACTTCTTCTCGACCAATAGAGATATTAGCCACTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATATAAACGAGGCTCAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAATTTGTGACCCTAAATTGTATT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCATATAAACGAGGCTCAAATCAACTGTCAATTTTTAGCTTCATTAGCTCTATTTCTGTTAAAGATATCAAAAAGGTGCTAGGTGATAAAAGACATTTGGGTGAATAACCGAGCAGTTGCCAATTTTTTAATATCGTCAACGGGAATCGAGATAATTGAGCTCAAAAATATTATATTTGTCATCTGGTTCTCTGCTAAAATATTAACTTTCAAACTTTTCCATAATACAATTTAGGGTCACAAATTT</canonical_amplicon>
		<polymorphic_amplicon>TCATATAAACGAGGCTCAAATCAACTGTCAATTTTTAGCTTCATTAGCTCTATTTCTGTTAAAGATATCAAAAAGGTGCTAGGTGATAAAAGACATTTGGGTGAATAACCGAGCAGTTGCCAATTTTTTAATATCGTCAACGGGAATCGAGATAATTGAGCTCAAAAATATTATATTTSTCATCTGGTTCTCTGCTAAAATATTAACTTTCAAACTTTTCCATAATACAATTTAGGGTCACAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14547</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>309323</contig_pos>
        <strand>+</strand>
        <context>ATTATATTTS[A/T]CATCTGGTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATATCGTCAACGGGAATCGAGATAATTGAGCTCAAAAATATTATATTTG</left_flank>
        <right_flank>CATCTGGTTCTCTGCTAAAATATTAACTTTCAAACTTTTCCATAATACAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTAAAAAAATAATCGAAAACGCTTCAATTTGTTTGAAAGTTACGCAATACGCCAACCATCATAAGAGCTTTGTTATTGACCACTGTTTTGTACAAATTCAACCAAGCGATATGAAGCGGAACAGAGGCATTTTCGACAATTTTTTGGTTAAGATGATATATCTCATCAGAATAGAGCTTGCTTGGCTCTAAAATTTTTATGCACTACAATGAAATTCTATTATTTAATAAACTCTGATCCTTTTAGAGCAATGCGAAAAGTCTTAACTTTATTCTGGGATTTGTATAATTGATTAATTTCTTCTGAAAATATCGTCTTTCATATAAACGAGGCTCAAATCAACTGTCAATTTTTAGCTTCATTAGCTCTATTTCTGTTAAAGATATCAAAAAGGTGCTAGGTGATAAAAGACATTTGGGTGAATAACCGAGCAGTTGCCAATTTTTTAATATCGTCAACGGGAATCGAGATAATTGAGCTCAAAAATATTATATTTGTCATCTGGTTCTCTGCTAAAATATTAACTTTCAAACTTTTCCATAATACAATTTAGGGTCACAAATTTAAGAGTAACACTATTTTAGTTCAATCTGGTACCACAGTGTCCTTGAACACCCTCTTTTCCTTCTTGCGACAAACAGTAATCAATCACTTTCCTAGAATCAAATTAAGACACCAGCCTTCCAACGTTTACCCGTCGGTGATACGATACTGACAAGTTGTTTTTCTTAGCGAAACACCTAATTTTTTCTTTCTTTGTTTGAAACTTGGAAACTATATATTTATTAAAATTTTTGGTCAACCTAGAAAATAAGCAGGTCAACCTGAGATTAGAAATTTAGAAATTGAGGGGGAAATTGTGTGAATTGGACCGTAAATTCGAGAAATCGTGTTCCCTTTCCCCGCACACACCGATGTTATGTTAATGAATGATATGAATCTATTCGAATTTCGGTTTTCACTTCTTCTCGACCAATAGAGATATTAGCCACTTTTTT</canonical>
            <polymorphic>TCTTAAAAAAATAATCGAAAACGCTTCAATTTGTTTGAAAGTTACGCAATACGCCAACCATCATAAGAGCTTTGTTATTGACCACTGTTTTGTACAAATTCAACCAAGCGATATGAAGCGGAACAGAGGCATTTTCGACAATTTTTTGGTTAAGATGATATATCTCATCAGAATAGAGCTTGCTTGGCTCTAAAATTTTTATGCACTACAATGAAATTCTATTATTTAATAAACTCTGATCCTTTTAGAGCAATGCGAAAAGTCTTAACTTTATTCTGGGATTTGTATAATTGATTAATTTCTTCTGAAAATATCGTCTTTCATATAAACGAGGCTCAAATCAACTGTCAATTTTTAGCTTCATTAGCTCTATTTCTGTTAAAGATATCAAAAAGGTGCTAGGTGATAAAAGACATTTGGGTGAATAACCGAGCAGTTGCCAATTTTTTAATATCGTCAACGGGAATCGAGATAATTGAGCTCAAAAATATTATATTTGWCATCTGGTTCTCTGCTAAAATATTAACTTTCAAACTTTTCCATAATACAATTTAGGGTCACAAATTTAAGAGTAACACTATTTTAGTTCAATCTGGTACCACAGTGTCCTTGAACACCCTCTTTTCCTTCTTGCGACAAACAGTAATCAATCACTTTCCTAGAATCAAATTAAGACACCAGCCTTCCAACGTTTACCCGTCGGTGATACGATACTGACAAGTTGTTTTTCTTAGCGAAACACCTAATTTTTTCTTTCTTTGTTTGAAACTTGGAAACTATATATTTATTAAAATTTTTGGTCAACCTAGAAAATAAGCAGGTCAACCTGAGATTAGAAATTTAGAAATTGAGGGGGAAATTGTGTGAATTGGACCGTAAATTCGAGAAATCGTGTTCCCTTTCCCCGCACACACCGATGTTATGTTAATGAATGATATGAATCTATTCGAATTTCGGTTTTCACTTCTTCTCGACCAATAGAGATATTAGCCACTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATATAAACGAGGCTCAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAATTTGTGACCCTAAATTGTATT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCATATAAACGAGGCTCAAATCAACTGTCAATTTTTAGCTTCATTAGCTCTATTTCTGTTAAAGATATCAAAAAGGTGCTAGGTGATAAAAGACATTTGGGTGAATAACCGAGCAGTTGCCAATTTTTTAATATCGTCAACGGGAATCGAGATAATTGAGCTCAAAAATATTATATTTGTCATCTGGTTCTCTGCTAAAATATTAACTTTCAAACTTTTCCATAATACAATTTAGGGTCACAAATTT</canonical_amplicon>
		<polymorphic_amplicon>TCATATAAACGAGGCTCAAATCAACTGTCAATTTTTAGCTTCATTAGCTCTATTTCTGTTAAAGATATCAAAAAGGTGCTAGGTGATAAAAGACATTTGGGTGAATAACCGAGCAGTTGCCAATTTTTTAATATCGTCAACGGGAATCGAGATAATTGAGCTCAAAAATATTATATTTGWCATCTGGTTCTCTGCTAAAATATTAACTTTCAAACTTTTCCATAATACAATTTAGGGTCACAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14548</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>309394</contig_pos>
        <strand>+</strand>
        <context>CAAATTTAAG[A/G]GTAACACTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTAACTTTCAAACTTTTCCATAATACAATTTAGGGTCACAAATTTAAG</left_flank>
        <right_flank>GTAACACTATTTTAGTTCAATCTGGTACCACAGTGTCCTTGAACACCCTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTATTGACCACTGTTTTGTACAAATTCAACCAAGCGATATGAAGCGGAACAGAGGCATTTTCGACAATTTTTTGGTTAAGATGATATATCTCATCAGAATAGAGCTTGCTTGGCTCTAAAATTTTTATGCACTACAATGAAATTCTATTATTTAATAAACTCTGATCCTTTTAGAGCAATGCGAAAAGTCTTAACTTTATTCTGGGATTTGTATAATTGATTAATTTCTTCTGAAAATATCGTCTTTCATATAAACGAGGCTCAAATCAACTGTCAATTTTTAGCTTCATTAGCTCTATTTCTGTTAAAGATATCAAAAAGGTGCTAGGTGATAAAAGACATTTGGGTGAATAACCGAGCAGTTGCCAATTTTTTAATATCGTCAACGGGAATCGAGATAATTGAGCTCAAAAATATTATATTTGTCATCTGGTTCTCTGCTAAAATATTAACTTTCAAACTTTTCCATAATACAATTTAGGGTCACAAATTTAAGAGTAACACTATTTTAGTTCAATCTGGTACCACAGTGTCCTTGAACACCCTCTTTTCCTTCTTGCGACAAACAGTAATCAATCACTTTCCTAGAATCAAATTAAGACACCAGCCTTCCAACGTTTACCCGTCGGTGATACGATACTGACAAGTTGTTTTTCTTAGCGAAACACCTAATTTTTTCTTTCTTTGTTTGAAACTTGGAAACTATATATTTATTAAAATTTTTGGTCAACCTAGAAAATAAGCAGGTCAACCTGAGATTAGAAATTTAGAAATTGAGGGGGAAATTGTGTGAATTGGACCGTAAATTCGAGAAATCGTGTTCCCTTTCCCCGCACACACCGATGTTATGTTAATGAATGATATGAATCTATTCGAATTTCGGTTTTCACTTCTTCTCGACCAATAGAGATATTAGCCACTTTTTTTTCGACGTCATCACTCGTTTTTCAATTCTTGGGCTGTGGTAGTGTTTTACGATCAGATAGACATCTACAAC</canonical>
            <polymorphic>TTGTTATTGACCACTGTTTTGTACAAATTCAACCAAGCGATATGAAGCGGAACAGAGGCATTTTCGACAATTTTTTGGTTAAGATGATATATCTCATCAGAATAGAGCTTGCTTGGCTCTAAAATTTTTATGCACTACAATGAAATTCTATTATTTAATAAACTCTGATCCTTTTAGAGCAATGCGAAAAGTCTTAACTTTATTCTGGGATTTGTATAATTGATTAATTTCTTCTGAAAATATCGTCTTTCATATAAACGAGGCTCAAATCAACTGTCAATTTTTAGCTTCATTAGCTCTATTTCTGTTAAAGATATCAAAAAGGTGCTAGGTGATAAAAGACATTTGGGTGAATAACCGAGCAGTTGCCAATTTTTTAATATCGTCAACGGGAATCGAGATAATTGAGCTCAAAAATATTATATTTGTCATCTGGTTCTCTGCTAAAATATTAACTTTCAAACTTTTCCATAATACAATTTAGGGTCACAAATTTAAGRGTAACACTATTTTAGTTCAATCTGGTACCACAGTGTCCTTGAACACCCTCTTTTCCTTCTTGCGACAAACAGTAATCAATCACTTTCCTAGAATCAAATTAAGACACCAGCCTTCCAACGTTTACCCGTCGGTGATACGATACTGACAAGTTGTTTTTCTTAGCGAAACACCTAATTTTTTCTTTCTTTGTTTGAAACTTGGAAACTATATATTTATTAAAATTTTTGGTCAACCTAGAAAATAAGCAGGTCAACCTGAGATTAGAAATTTAGAAATTGAGGGGGAAATTGTGTGAATTGGACCGTAAATTCGAGAAATCGTGTTCCCTTTCCCCGCACACACCGATGTTATGTTAATGAATGATATGAATCTATTCGAATTTCGGTTTTCACTTCTTCTCGACCAATAGAGATATTAGCCACTTTTTTTTCGACGTCATCACTCGTTTTTCAATTCTTGGGCTGTGGTAGTGTTTTACGATCAGATAGACATCTACAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTTCTCTGCTAAAATATTAACTT</pcr_primer_p1>
		<pcr_primer_p2>ATTAGGTGTTTCGCTAAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TGGTTCTCTGCTAAAATATTAACTTTCAAACTTTTCCATAATACAATTTAGGGTCACAAATTTAAGAGTAACACTATTTTAGTTCAATCTGGTACCACAGTGTCCTTGAACACCCTCTTTTCCTTCTTGCGACAAACAGTAATCAATCACTTTCCTAGAATCAAATTAAGACACCAGCCTTCCAACGTTTACCCGTCGGTGATACGATACTGACAAGTTGTTTTTCTTAGCGAAACACCTAAT</canonical_amplicon>
		<polymorphic_amplicon>TGGTTCTCTGCTAAAATATTAACTTTCAAACTTTTCCATAATACAATTTAGGGTCACAAATTTAAGRGTAACACTATTTTAGTTCAATCTGGTACCACAGTGTCCTTGAACACCCTCTTTTCCTTCTTGCGACAAACAGTAATCAATCACTTTCCTAGAATCAAATTAAGACACCAGCCTTCCAACGTTTACCCGTCGGTGATACGATACTGACAAGTTGTTTTTCTTAGCGAAACACCTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14570</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>309684</contig_pos>
        <strand>+</strand>
        <context>AGGGGGAAAT[C/T]GTGTGAATTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATAAGCAGGTCAACCTGAGATTAGAAATTTAGAAATTGAGGGGGAAAT</left_flank>
        <right_flank>GTGTGAATTGGACCGTAAATTCGAGAAATCGTGTTCCCTTTCCCCGCACA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTAGCTCTATTTCTGTTAAAGATATCAAAAAGGTGCTAGGTGATAAAAGACATTTGGGTGAATAACCGAGCAGTTGCCAATTTTTTAATATCGTCAACGGGAATCGAGATAATTGAGCTCAAAAATATTATATTTGTCATCTGGTTCTCTGCTAAAATATTAACTTTCAAACTTTTCCATAATACAATTTAGGGTCACAAATTTAAGAGTAACACTATTTTAGTTCAATCTGGTACCACAGTGTCCTTGAACACCCTCTTTTCCTTCTTGCGACAAACAGTAATCAATCACTTTCCTAGAATCAAATTAAGACACCAGCCTTCCAACGTTTACCCGTCGGTGATACGATACTGACAAGTTGTTTTTCTTAGCGAAACACCTAATTTTTTCTTTCTTTGTTTGAAACTTGGAAACTATATATTTATTAAAATTTTTGGTCAACCTAGAAAATAAGCAGGTCAACCTGAGATTAGAAATTTAGAAATTGAGGGGGAAATTGTGTGAATTGGACCGTAAATTCGAGAAATCGTGTTCCCTTTCCCCGCACACACCGATGTTATGTTAATGAATGATATGAATCTATTCGAATTTCGGTTTTCACTTCTTCTCGACCAATAGAGATATTAGCCACTTTTTTTTCGACGTCATCACTCGTTTTTCAATTCTTGGGCTGTGGTAGTGTTTTACGATCAGATAGACATCTACAACCTTCACCTAATCGGCCCCACTAGTCACTTCAATTTAAATCAAAAATTTTTATTTACAGGTTTTCGCCAAGGATATCGAGACCGACTATCAAGCACTGTACAGAGAGAACGCCGAGTTGCAGCGTGCATTAAATGTAAGTTTAATGATTCATTTTCAGACTTTTCTCAAATCTAGATAATGAGATTTTAAATGAAACCATAAAATTTAATTTAGGAAATTTAATTTTTCCGAAATATCGAATTAATTACTTAGAAAACTTTGAAAAATAGGTTGAAAGTGTGGCTCACTGA</canonical>
            <polymorphic>CATTAGCTCTATTTCTGTTAAAGATATCAAAAAGGTGCTAGGTGATAAAAGACATTTGGGTGAATAACCGAGCAGTTGCCAATTTTTTAATATCGTCAACGGGAATCGAGATAATTGAGCTCAAAAATATTATATTTGTCATCTGGTTCTCTGCTAAAATATTAACTTTCAAACTTTTCCATAATACAATTTAGGGTCACAAATTTAAGAGTAACACTATTTTAGTTCAATCTGGTACCACAGTGTCCTTGAACACCCTCTTTTCCTTCTTGCGACAAACAGTAATCAATCACTTTCCTAGAATCAAATTAAGACACCAGCCTTCCAACGTTTACCCGTCGGTGATACGATACTGACAAGTTGTTTTTCTTAGCGAAACACCTAATTTTTTCTTTCTTTGTTTGAAACTTGGAAACTATATATTTATTAAAATTTTTGGTCAACCTAGAAAATAAGCAGGTCAACCTGAGATTAGAAATTTAGAAATTGAGGGGGAAATYGTGTGAATTGGACCGTAAATTCGAGAAATCGTGTTCCCTTTCCCCGCACACACCGATGTTATGTTAATGAATGATATGAATCTATTCGAATTTCGGTTTTCACTTCTTCTCGACCAATAGAGATATTAGCCACTTTTTTTTCGACGTCATCACTCGTTTTTCAATTCTTGGGCTGTGGTAGTGTTTTACGATCAGATAGACATCTACAACCTTCACCTAATCGGCCCCACTAGTCACTTCAATTTAAATCAAAAATTTTTATTTACAGGTTTTCGCCAAGGATATCGAGACCGACTATCAAGCACTGTACAGAGAGAACGCCGAGTTGCAGCGTGCATTAAATGTAAGTTTAATGATTCATTTTCAGACTTTTCTCAAATCTAGATAATGAGATTTTAAATGAAACCATAAAATTTAATTTAGGAAATTTAATTTTTCCGAAATATCGAATTAATTACTTAGAAAACTTTGAAAAATAGGTTGAAAGTGTGGCTCACTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>158 105 80 78 77 75 74 71 48 47 46 32 18 14 13 12 12 9 9 8 5 5 4</canonical_bands>
                <polymorphic_bands>158 105 80 78 77 75 74 71 48 47 46 32 21 18 14 13 12 9 8 5 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGATACTGACAAGTTGTTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CCGAAATTCGAATAGATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGATACTGACAAGTTGTTTTTCTTAGCGAAACACCTAATTTTTTCTTTCTTTGTTTGAAACTTGGAAACTATATATTTATTAAAATTTTTGGTCAACCTAGAAAATAAGCAGGTCAACCTGAGATTAGAAATTTAGAAATTGAGGGGGAAATTGTGTGAATTGGACCGTAAATTCGAGAAATCGTGTTCCCTTTCCCCGCACACACCGATGTTATGTTAATGAATGATATGAATCTATTCGAATTTCGG</canonical_amplicon>
		<polymorphic_amplicon>ACGATACTGACAAGTTGTTTTTCTTAGCGAAACACCTAATTTTTTCTTTCTTTGTTTGAAACTTGGAAACTATATATTTATTAAAATTTTTGGTCAACCTAGAAAATAAGCAGGTCAACCTGAGATTAGAAATTTAGAAATTGAGGGGGAAATYGTGTGAATTGGACCGTAAATTCGAGAAATCGTGTTCCCTTTCCCCGCACACACCGATGTTATGTTAATGAATGATATGAATCTATTCGAATTTCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14571</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>309716</contig_pos>
        <strand>+</strand>
        <context>CGAGAAATCG[C/T]GTTCCCTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAATTGAGGGGGAAATTGTGTGAATTGGACCGTAAATTCGAGAAATCG</left_flank>
        <right_flank>GTTCCCTTTCCCCGCACACACCGATGTTATGTTAATGAATGATATGAATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGTGCTAGGTGATAAAAGACATTTGGGTGAATAACCGAGCAGTTGCCAATTTTTTAATATCGTCAACGGGAATCGAGATAATTGAGCTCAAAAATATTATATTTGTCATCTGGTTCTCTGCTAAAATATTAACTTTCAAACTTTTCCATAATACAATTTAGGGTCACAAATTTAAGAGTAACACTATTTTAGTTCAATCTGGTACCACAGTGTCCTTGAACACCCTCTTTTCCTTCTTGCGACAAACAGTAATCAATCACTTTCCTAGAATCAAATTAAGACACCAGCCTTCCAACGTTTACCCGTCGGTGATACGATACTGACAAGTTGTTTTTCTTAGCGAAACACCTAATTTTTTCTTTCTTTGTTTGAAACTTGGAAACTATATATTTATTAAAATTTTTGGTCAACCTAGAAAATAAGCAGGTCAACCTGAGATTAGAAATTTAGAAATTGAGGGGGAAATTGTGTGAATTGGACCGTAAATTCGAGAAATCGTGTTCCCTTTCCCCGCACACACCGATGTTATGTTAATGAATGATATGAATCTATTCGAATTTCGGTTTTCACTTCTTCTCGACCAATAGAGATATTAGCCACTTTTTTTTCGACGTCATCACTCGTTTTTCAATTCTTGGGCTGTGGTAGTGTTTTACGATCAGATAGACATCTACAACCTTCACCTAATCGGCCCCACTAGTCACTTCAATTTAAATCAAAAATTTTTATTTACAGGTTTTCGCCAAGGATATCGAGACCGACTATCAAGCACTGTACAGAGAGAACGCCGAGTTGCAGCGTGCATTAAATGTAAGTTTAATGATTCATTTTCAGACTTTTCTCAAATCTAGATAATGAGATTTTAAATGAAACCATAAAATTTAATTTAGGAAATTTAATTTTTCCGAAATATCGAATTAATTACTTAGAAAACTTTGAAAAATAGGTTGAAAGTGTGGCTCACTGAAATTGTTCGAATTTTCCCATTCAAAAACTCAA</canonical>
            <polymorphic>AGGTGCTAGGTGATAAAAGACATTTGGGTGAATAACCGAGCAGTTGCCAATTTTTTAATATCGTCAACGGGAATCGAGATAATTGAGCTCAAAAATATTATATTTGTCATCTGGTTCTCTGCTAAAATATTAACTTTCAAACTTTTCCATAATACAATTTAGGGTCACAAATTTAAGAGTAACACTATTTTAGTTCAATCTGGTACCACAGTGTCCTTGAACACCCTCTTTTCCTTCTTGCGACAAACAGTAATCAATCACTTTCCTAGAATCAAATTAAGACACCAGCCTTCCAACGTTTACCCGTCGGTGATACGATACTGACAAGTTGTTTTTCTTAGCGAAACACCTAATTTTTTCTTTCTTTGTTTGAAACTTGGAAACTATATATTTATTAAAATTTTTGGTCAACCTAGAAAATAAGCAGGTCAACCTGAGATTAGAAATTTAGAAATTGAGGGGGAAATTGTGTGAATTGGACCGTAAATTCGAGAAATCGYGTTCCCTTTCCCCGCACACACCGATGTTATGTTAATGAATGATATGAATCTATTCGAATTTCGGTTTTCACTTCTTCTCGACCAATAGAGATATTAGCCACTTTTTTTTCGACGTCATCACTCGTTTTTCAATTCTTGGGCTGTGGTAGTGTTTTACGATCAGATAGACATCTACAACCTTCACCTAATCGGCCCCACTAGTCACTTCAATTTAAATCAAAAATTTTTATTTACAGGTTTTCGCCAAGGATATCGAGACCGACTATCAAGCACTGTACAGAGAGAACGCCGAGTTGCAGCGTGCATTAAATGTAAGTTTAATGATTCATTTTCAGACTTTTCTCAAATCTAGATAATGAGATTTTAAATGAAACCATAAAATTTAATTTAGGAAATTTAATTTTTCCGAAATATCGAATTAATTACTTAGAAAACTTTGAAAAATAGGTTGAAAGTGTGGCTCACTGAAATTGTTCGAATTTTCCCATTCAAAAACTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>154 137 123 68 50 37 36 36 32 31 30 28 28 25 24 24 20 18 17 15 14 10 7 7 6 5 5 5 2 2 2 2</canonical_bands>
                <polymorphic_bands>154 137 123 68 50 43 37 36 36 32 31 30 28 25 24 24 20 18 17 14 10 7 7 6 5 5 5 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGATACTGACAAGTTGTTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CCGAAATTCGAATAGATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGATACTGACAAGTTGTTTTTCTTAGCGAAACACCTAATTTTTTCTTTCTTTGTTTGAAACTTGGAAACTATATATTTATTAAAATTTTTGGTCAACCTAGAAAATAAGCAGGTCAACCTGAGATTAGAAATTTAGAAATTGAGGGGGAAATTGTGTGAATTGGACCGTAAATTCGAGAAATCGTGTTCCCTTTCCCCGCACACACCGATGTTATGTTAATGAATGATATGAATCTATTCGAATTTCGG</canonical_amplicon>
		<polymorphic_amplicon>ACGATACTGACAAGTTGTTTTTCTTAGCGAAACACCTAATTTTTTCTTTCTTTGTTTGAAACTTGGAAACTATATATTTATTAAAATTTTTGGTCAACCTAGAAAATAAGCAGGTCAACCTGAGATTAGAAATTTAGAAATTGAGGGGGAAATTGTGTGAATTGGACCGTAAATTCGAGAAATCGYGTTCCCTTTCCCCGCACACACCGATGTTATGTTAATGAATGATATGAATCTATTCGAATTTCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14572</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>309784</contig_pos>
        <strand></strand>
        <context>ATTTCGGTTT[T/C]CACTTCTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACACCGATGTTATGTTAATGAATGATATGAATCTATTCGAATTTCGGTTT</left_flank>
        <right_flank>CACTTCTTCTCGACCAATAGAGATATTAGCCACTTTTTTTTCGACGTCAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGAATCGAGATAATTGAGCTCAAAAATATTATATTTGTCATCTGGTTCTCTGCTAAAATATTAACTTTCAAACTTTTCCATAATACAATTTAGGGTCACAAATTTAAGAGTAACACTATTTTAGTTCAATCTGGTACCACAGTGTCCTTGAACACCCTCTTTTCCTTCTTGCGACAAACAGTAATCAATCACTTTCCTAGAATCAAATTAAGACACCAGCCTTCCAACGTTTACCCGTCGGTGATACGATACTGACAAGTTGTTTTTCTTAGCGAAACACCTAATTTTTTCTTTCTTTGTTTGAAACTTGGAAACTATATATTTATTAAAATTTTTGGTCAACCTAGAAAATAAGCAGGTCAACCTGAGATTAGAAATTTAGAAATTGAGGGGGAAATTGTGTGAATTGGACCGTAAATTCGAGAAATCGTGTTCCCTTTCCCCGCACACACCGATGTTATGTTAATGAATGATATGAATCTATTCGAATTTCGGTTTTCACTTCTTCTCGACCAATAGAGATATTAGCCACTTTTTTTTCGACGTCATCACTCGTTTTTCAATTCTTGGGCTGTGGTAGTGTTTTACGATCAGATAGACATCTACAACCTTCACCTAATCGGCCCCACTAGTCACTTCAATTTAAATCAAAAATTTTTATTTACAGGTTTTCGCCAAGGATATCGAGACCGACTATCAAGCACTGTACAGAGAGAACGCCGAGTTGCAGCGTGCATTAAATGTAAGTTTAATGATTCATTTTCAGACTTTTCTCAAATCTAGATAATGAGATTTTAAATGAAACCATAAAATTTAATTTAGGAAATTTAATTTTTCCGAAATATCGAATTAATTACTTAGAAAACTTTGAAAAATAGGTTGAAAGTGTGGCTCACTGAAATTGTTCGAATTTTCCCATTCAAAAACTCAAAATTTTGAATACAAACCTTTTTTTCAAATTTCAAAAATTGGAAATTGCGAGCTGAATTCTGATTTTTA</canonical>
            <polymorphic>GGGAATCGAGATAATTGAGCTCAAAAATATTATATTTGTCATCTGGTTCTCTGCTAAAATATTAACTTTCAAACTTTTCCATAATACAATTTAGGGTCACAAATTTAAGAGTAACACTATTTTAGTTCAATCTGGTACCACAGTGTCCTTGAACACCCTCTTTTCCTTCTTGCGACAAACAGTAATCAATCACTTTCCTAGAATCAAATTAAGACACCAGCCTTCCAACGTTTACCCGTCGGTGATACGATACTGACAAGTTGTTTTTCTTAGCGAAACACCTAATTTTTTCTTTCTTTGTTTGAAACTTGGAAACTATATATTTATTAAAATTTTTGGTCAACCTAGAAAATAAGCAGGTCAACCTGAGATTAGAAATTTAGAAATTGAGGGGGAAATTGTGTGAATTGGACCGTAAATTCGAGAAATCGTGTTCCCTTTCCCCGCACACACCGATGTTATGTTAATGAATGATATGAATCTATTCGAATTTCGGTTTYCACTTCTTCTCGACCAATAGAGATATTAGCCACTTTTTTTTCGACGTCATCACTCGTTTTTCAATTCTTGGGCTGTGGTAGTGTTTTACGATCAGATAGACATCTACAACCTTCACCTAATCGGCCCCACTAGTCACTTCAATTTAAATCAAAAATTTTTATTTACAGGTTTTCGCCAAGGATATCGAGACCGACTATCAAGCACTGTACAGAGAGAACGCCGAGTTGCAGCGTGCATTAAATGTAAGTTTAATGATTCATTTTCAGACTTTTCTCAAATCTAGATAATGAGATTTTAAATGAAACCATAAAATTTAATTTAGGAAATTTAATTTTTCCGAAATATCGAATTAATTACTTAGAAAACTTTGAAAAATAGGTTGAAAGTGTGGCTCACTGAAATTGTTCGAATTTTCCCATTCAAAAACTCAAAATTTTGAATACAAACCTTTTTTTCAAATTTCAAAAATTGGAAATTGCGAGCTGAATTCTGATTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTAGAAAATAAGCAGGTCAAC</pcr_primer_p1>
		<pcr_primer_p2>TGATCGTAAAACACTACCACAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACCTAGAAAATAAGCAGGTCAACCTGAGATTAGAAATTTAGAAATTGAGGGGGAAATTGTGTGAATTGGACCGTAAATTCGAGAAATCGTGTTCCCTTTCCCCGCACACACCGATGTTATGTTAATGAATGATATGAATCTATTCGAATTTCGGTTTTCACTTCTTCTCGACCAATAGAGATATTAGCCACTTTTTTTTCGACGTCATCACTCGTTTTTCAATTCTTGGGCTGTGGTAGTGTTTTACGATCA</canonical_amplicon>
		<polymorphic_amplicon>ACCTAGAAAATAAGCAGGTCAACCTGAGATTAGAAATTTAGAAATTGAGGGGGAAATTGTGTGAATTGGACCGTAAATTCGAGAAATCGTGTTCCCTTTCCCCGCACACACCGATGTTATGTTAATGAATGATATGAATCTATTCGAATTTCGGTTTYCACTTCTTCTCGACCAATAGAGATATTAGCCACTTTTTTTTCGACGTCATCACTCGTTTTTCAATTCTTGGGCTGTGGTAGTGTTTTACGATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14573</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>311693</contig_pos>
        <strand>+</strand>
        <context>TAAACCTGCG[A/T]TAGAAAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCG</left_flank>
        <right_flank>TAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTATGTGTAAATACAATATACCAGCTGGCAATTACGTACAGCCAACGCCACTACCAATCCCTCTCTTTATTCCAATTGATATACTGATTTGCTTGCGTTTCGTGTGTATTTTTTGCCCTTTTTGCATGAGAACTAACCAAATTTCAGATGTCCCAAACTGCCCAACTCAAATCGACCATCGCTGGTCAACAGGAACACATTCGTTGTATGGAAACTACAATTGATGACTTGAAACAACAAATTGCGTCGCAAACCGAGAGAAATGATGTGCTCGAGTTCCAAGTGCTTGAGATGGAGGAGAATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATACAAAATTCGAGTCTGAAAAATCCCAATTGCTCAAAGAACTAATCGAAGTCAAAAAGGCTCATGCTGCTCAACTTGAAAATATTGCC</canonical>
            <polymorphic>TGTATGTGTAAATACAATATACCAGCTGGCAATTACGTACAGCCAACGCCACTACCAATCCCTCTCTTTATTCCAATTGATATACTGATTTGCTTGCGTTTCGTGTGTATTTTTTGCCCTTTTTGCATGAGAACTAACCAAATTTCAGATGTCCCAAACTGCCCAACTCAAATCGACCATCGCTGGTCAACAGGAACACATTCGTTGTATGGAAACTACAATTGATGACTTGAAACAACAAATTGCGTCGCAAACCGAGAGAAATGATGTGCTCGAGTTCCAAGTGCTTGAGATGGAGGAGAATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGWTAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATACAAAATTCGAGTCTGAAAAATCCCAATTGCTCAAAGAACTAATCGAAGTCAAAAAGGCTCATGCTGCTCAACTTGAAAATATTGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACATCAGGTTTGATAGACAT</pcr_primer_p1>
		<pcr_primer_p2>TTCTATCAGTGCTGGTAAATAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTGATAGAA</canonical_amplicon>
		<polymorphic_amplicon>GAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGWTAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTGATAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14581</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>311656</contig_pos>
        <strand></strand>
        <context>aattaaaaat[T/G]aattattGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAAT</left_flank>
        <right_flank>AATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCAGTGGAAAAAGTGCGTTCCGCGTGGACTTTCGTGTGTATGTGTAAATACAATATACCAGCTGGCAATTACGTACAGCCAACGCCACTACCAATCCCTCTCTTTATTCCAATTGATATACTGATTTGCTTGCGTTTCGTGTGTATTTTTTGCCCTTTTTGCATGAGAACTAACCAAATTTCAGATGTCCCAAACTGCCCAACTCAAATCGACCATCGCTGGTCAACAGGAACACATTCGTTGTATGGAAACTACAATTGATGACTTGAAACAACAAATTGCGTCGCAAACCGAGAGAAATGATGTGCTCGAGTTCCAAGTGCTTGAGATGGAGGAGAATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATACAAAATTCGAGTCTGAAAAATCCCAATTGCTCAAAGAACTAATCGAAGT</canonical>
            <polymorphic>GGCAGTGGAAAAAGTGCGTTCCGCGTGGACTTTCGTGTGTATGTGTAAATACAATATACCAGCTGGCAATTACGTACAGCCAACGCCACTACCAATCCCTCTCTTTATTCCAATTGATATACTGATTTGCTTGCGTTTCGTGTGTATTTTTTGCCCTTTTTGCATGAGAACTAACCAAATTTCAGATGTCCCAAACTGCCCAACTCAAATCGACCATCGCTGGTCAACAGGAACACATTCGTTGTATGGAAACTACAATTGATGACTTGAAACAACAAATTGCGTCGCAAACCGAGAGAAATGATGTGCTCGAGTTCCAAGTGCTTGAGATGGAGGAGAATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATKAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATACAAAATTCGAGTCTGAAAAATCCCAATTGCTCAAAGAACTAATCGAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 357 144</canonical_bands>
                <polymorphic_bands>856 144</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>389 153 96 76 75 50 49 27 27 12 11 10 8 7 6 4</canonical_bands>
                <polymorphic_bands>389 153 96 76 75 56 50 27 27 12 11 10 8 6 4</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>140 133 125 79 76 67 66 49 44 43 25 21 21 21 17 17 14 11 8 7 6 6 4</canonical_bands>
                <polymorphic_bands>140 133 125 79 76 67 66 49 44 43 25 21 21 21 17 17 14 11 11 8 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCAGAAACATCAGGTTTGATA</pcr_primer_p1>
		<pcr_primer_p2>CAGTGCTGGTAAATAGTAACTGG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTG</canonical_amplicon>
		<polymorphic_amplicon>AATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATKAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14595</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>311608</contig_pos>
        <strand>+</strand>
        <context>TGACTCGGTT[C/T]AGTTGGGATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTT</left_flank>
        <right_flank>AGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAA</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGCAAAATGACGTGACTACCGAAAAAAGGGTGGAGCGGCGACGCGCGGCAGTGGAAAAAGTGCGTTCCGCGTGGACTTTCGTGTGTATGTGTAAATACAATATACCAGCTGGCAATTACGTACAGCCAACGCCACTACCAATCCCTCTCTTTATTCCAATTGATATACTGATTTGCTTGCGTTTCGTGTGTATTTTTTGCCCTTTTTGCATGAGAACTAACCAAATTTCAGATGTCCCAAACTGCCCAACTCAAATCGACCATCGCTGGTCAACAGGAACACATTCGTTGTATGGAAACTACAATTGATGACTTGAAACAACAAATTGCGTCGCAAACCGAGAGAAATGATGTGCTCGAGTTCCAAGTGCTTGAGATGGAGGAGAATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATAC</canonical>
            <polymorphic>CCAGCAAAATGACGTGACTACCGAAAAAAGGGTGGAGCGGCGACGCGCGGCAGTGGAAAAAGTGCGTTCCGCGTGGACTTTCGTGTGTATGTGTAAATACAATATACCAGCTGGCAATTACGTACAGCCAACGCCACTACCAATCCCTCTCTTTATTCCAATTGATATACTGATTTGCTTGCGTTTCGTGTGTATTTTTTGCCCTTTTTGCATGAGAACTAACCAAATTTCAGATGTCCCAAACTGCCCAACTCAAATCGACCATCGCTGGTCAACAGGAACACATTCGTTGTATGGAAACTACAATTGATGACTTGAAACAACAAATTGCGTCGCAAACCGAGAGAAATGATGTGCTCGAGTTCCAAGTGCTTGAGATGGAGGAGAATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTYAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCAGAAACATCAGGTTTGATA</pcr_primer_p1>
		<pcr_primer_p2>CAGTGCTGGTAAATAGTAACTGG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTG</canonical_amplicon>
		<polymorphic_amplicon>AATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTYAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14596</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>311590</contig_pos>
        <strand>+</strand>
        <context>AATTATCTGA[C/T]TTTGATCTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGA</left_flank>
        <right_flank>TTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTGAGCAGCTGCCCCGCCAGCAAAATGACGTGACTACCGAAAAAAGGGTGGAGCGGCGACGCGCGGCAGTGGAAAAAGTGCGTTCCGCGTGGACTTTCGTGTGTATGTGTAAATACAATATACCAGCTGGCAATTACGTACAGCCAACGCCACTACCAATCCCTCTCTTTATTCCAATTGATATACTGATTTGCTTGCGTTTCGTGTGTATTTTTTGCCCTTTTTGCATGAGAACTAACCAAATTTCAGATGTCCCAAACTGCCCAACTCAAATCGACCATCGCTGGTCAACAGGAACACATTCGTTGTATGGAAACTACAATTGATGACTTGAAACAACAAATTGCGTCGCAAACCGAGAGAAATGATGTGCTCGAGTTCCAAGTGCTTGAGATGGAGGAGAATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGAAAC</canonical>
            <polymorphic>CATTGAGCAGCTGCCCCGCCAGCAAAATGACGTGACTACCGAAAAAAGGGTGGAGCGGCGACGCGCGGCAGTGGAAAAAGTGCGTTCCGCGTGGACTTTCGTGTGTATGTGTAAATACAATATACCAGCTGGCAATTACGTACAGCCAACGCCACTACCAATCCCTCTCTTTATTCCAATTGATATACTGATTTGCTTGCGTTTCGTGTGTATTTTTTGCCCTTTTTGCATGAGAACTAACCAAATTTCAGATGTCCCAAACTGCCCAACTCAAATCGACCATCGCTGGTCAACAGGAACACATTCGTTGTATGGAAACTACAATTGATGACTTGAAACAACAAATTGCGTCGCAAACCGAGAGAAATGATGTGCTCGAGTTCCAAGTGCTTGAGATGGAGGAGAATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGAYTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATNNNNATC</site>
                <isoschizomers>
                    <enzyme>BsaBI</enzyme>
                    <enzyme>Bse8I</enzyme>
                    <enzyme>BseJI</enzyme>
                    <enzyme>BsiBI</enzyme>
                    <enzyme>BsrBRI</enzyme>
                    <enzyme>MamI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCAGAAACATCAGGTTTGATA</pcr_primer_p1>
		<pcr_primer_p2>CAGTGCTGGTAAATAGTAACTGG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTG</canonical_amplicon>
		<polymorphic_amplicon>AATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGAYTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14597</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>311574</contig_pos>
        <strand>+</strand>
        <context>ATTTTTYGTT[A/G]ATTTGAATTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTT</left_flank>
        <right_flank>ATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGTAGTGCCTTGAGCATTGAGCAGCTGCCCCGCCAGCAAAATGACGTGACTACCGAAAAAAGGGTGGAGCGGCGACGCGCGGCAGTGGAAAAAGTGCGTTCCGCGTGGACTTTCGTGTGTATGTGTAAATACAATATACCAGCTGGCAATTACGTACAGCCAACGCCACTACCAATCCCTCTCTTTATTCCAATTGATATACTGATTTGCTTGCGTTTCGTGTGTATTTTTTGCCCTTTTTGCATGAGAACTAACCAAATTTCAGATGTCCCAAACTGCCCAACTCAAATCGACCATCGCTGGTCAACAGGAACACATTCGTTGTATGGAAACTACAATTGATGACTTGAAACAACAAATTGCGTCGCAAACCGAGAGAAATGATGTGCTCGAGTTCCAAGTGCTTGAGATGGAGGAGAATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACT</canonical>
            <polymorphic>TCTGTAGTGCCTTGAGCATTGAGCAGCTGCCCCGCCAGCAAAATGACGTGACTACCGAAAAAAGGGTGGAGCGGCGACGCGCGGCAGTGGAAAAAGTGCGTTCCGCGTGGACTTTCGTGTGTATGTGTAAATACAATATACCAGCTGGCAATTACGTACAGCCAACGCCACTACCAATCCCTCTCTTTATTCCAATTGATATACTGATTTGCTTGCGTTTCGTGTGTATTTTTTGCCCTTTTTGCATGAGAACTAACCAAATTTCAGATGTCCCAAACTGCCCAACTCAAATCGACCATCGCTGGTCAACAGGAACACATTCGTTGTATGGAAACTACAATTGATGACTTGAAACAACAAATTGCGTCGCAAACCGAGAGAAATGATGTGCTCGAGTTCCAAGTGCTTGAGATGGAGGAGAATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTRATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>471 153 76 75 50 49 27 27 14 12 11 10 8 7 6 4</canonical_bands>
                <polymorphic_bands>471 153 103 75 50 49 27 14 12 11 10 8 7 6 4</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>149 140 133 125 79 66 49 44 43 40 21 21 17 17 14 11 8 7 6 6 4</canonical_bands>
                <polymorphic_bands>149 146 133 125 79 66 49 44 43 40 21 21 17 17 14 11 8 7 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCAGAAACATCAGGTTTGATA</pcr_primer_p1>
		<pcr_primer_p2>CAGTGCTGGTAAATAGTAACTGG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTG</canonical_amplicon>
		<polymorphic_amplicon>AATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTRATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14598</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>311570</contig_pos>
        <strand>+</strand>
        <context>TTTGATTTTT[C/T]GTTRATTTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTT</left_flank>
        <right_flank>GTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGTCTGTAGTGCCTTGAGCATTGAGCAGCTGCCCCGCCAGCAAAATGACGTGACTACCGAAAAAAGGGTGGAGCGGCGACGCGCGGCAGTGGAAAAAGTGCGTTCCGCGTGGACTTTCGTGTGTATGTGTAAATACAATATACCAGCTGGCAATTACGTACAGCCAACGCCACTACCAATCCCTCTCTTTATTCCAATTGATATACTGATTTGCTTGCGTTTCGTGTGTATTTTTTGCCCTTTTTGCATGAGAACTAACCAAATTTCAGATGTCCCAAACTGCCCAACTCAAATCGACCATCGCTGGTCAACAGGAACACATTCGTTGTATGGAAACTACAATTGATGACTTGAAACAACAAATTGCGTCGCAAACCGAGAGAAATGATGTGCTCGAGTTCCAAGTGCTTGAGATGGAGGAGAATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAA</canonical>
            <polymorphic>TCTGTCTGTAGTGCCTTGAGCATTGAGCAGCTGCCCCGCCAGCAAAATGACGTGACTACCGAAAAAAGGGTGGAGCGGCGACGCGCGGCAGTGGAAAAAGTGCGTTCCGCGTGGACTTTCGTGTGTATGTGTAAATACAATATACCAGCTGGCAATTACGTACAGCCAACGCCACTACCAATCCCTCTCTTTATTCCAATTGATATACTGATTTGCTTGCGTTTCGTGTGTATTTTTTGCCCTTTTTGCATGAGAACTAACCAAATTTCAGATGTCCCAAACTGCCCAACTCAAATCGACCATCGCTGGTCAACAGGAACACATTCGTTGTATGGAAACTACAATTGATGACTTGAAACAACAAATTGCGTCGCAAACCGAGAGAAATGATGTGCTCGAGTTCCAAGTGCTTGAGATGGAGGAGAATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTYGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCAGAAACATCAGGTTTGATA</pcr_primer_p1>
		<pcr_primer_p2>CAGTGCTGGTAAATAGTAACTGG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTG</canonical_amplicon>
		<polymorphic_amplicon>AATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTYGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14599</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>311978</contig_pos>
        <strand>+</strand>
        <context>AAAAACTTCT[G/T]CTATAATATT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCT</left_flank>
        <right_flank>CTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTGAGATGGAGGAGAATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATACAAAATTCGAGTCTGAAAAATCCCAATTGCTCAAAGAACTAATCGAAGTCAAAAAGGCTCATGCTGCTCAACTTGAAAATATTGCCTCTATCAGAAAGGAACTTGAAGAGCACAAGTCTGCTGCTCCAGCCGCCAATGCTTCAGTATCCGAGTCAGAGAAAGTGAAGACCATTCAAGAGAAACTAGAAAAAGCTGAATCTGCCAATGTTACAGTAAGAAATTGTTCAATTACGCAGAGAGTTAATCCAATTTTCAGATTAATGAGGAACTAAGGTCGGCGTCGAAGGAACTTGGAAAGATTCGATTCCAAATGCAAGGGAAAGAAAGCGACTTAACTAGAGAGAGAAAAATGACAGAGGCTCTCAGCGCGT</canonical>
            <polymorphic>GCTTGAGATGGAGGAGAATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTKCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATACAAAATTCGAGTCTGAAAAATCCCAATTGCTCAAAGAACTAATCGAAGTCAAAAAGGCTCATGCTGCTCAACTTGAAAATATTGCCTCTATCAGAAAGGAACTTGAAGAGCACAAGTCTGCTGCTCCAGCCGCCAATGCTTCAGTATCCGAGTCAGAGAAAGTGAAGACCATTCAAGAGAAACTAGAAAAAGCTGAATCTGCCAATGTTACAGTAAGAAATTGTTCAATTACGCAGAGAGTTAATCCAATTTTCAGATTAATGAGGAACTAAGGTCGGCGTCGAAGGAACTTGGAAAGATTCGATTCCAAATGCAAGGGAAAGAAAGCGACTTAACTAGAGAGAGAAAAATGACAGAGGCTCTCAGCGCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCAGCACTGATAGAATGTCTTA</pcr_primer_p1>
		<pcr_primer_p2>CAGACTCGAATTTTGTATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>389</pcr_amplicon_size>
		<canonical_amplicon>ACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATACAAAATTCGAGTCTG</canonical_amplicon>
		<polymorphic_amplicon>ACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTKCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATACAAAATTCGAGTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14600</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>311931</contig_pos>
        <strand>+</strand>
        <context>GTTTTTGAAA[A/C]TTGTACAGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAA</left_flank>
        <right_flank>TTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATTGCGTCGCAAACCGAGAGAAATGATGTGCTCGAGTTCCAAGTGCTTGAGATGGAGGAGAATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATACAAAATTCGAGTCTGAAAAATCCCAATTGCTCAAAGAACTAATCGAAGTCAAAAAGGCTCATGCTGCTCAACTTGAAAATATTGCCTCTATCAGAAAGGAACTTGAAGAGCACAAGTCTGCTGCTCCAGCCGCCAATGCTTCAGTATCCGAGTCAGAGAAAGTGAAGACCATTCAAGAGAAACTAGAAAAAGCTGAATCTGCCAATGTTACAGTAAGAAATTGTTCAATTACGCAGAGAGTTAATCCAATTTTCAGATTAATGAGGAACTAAGGTCGGCGTCGAAGGAACTTGGAAAGATTCGATTCCAAATGCAAGGGAAAGA</canonical>
            <polymorphic>CAAATTGCGTCGCAAACCGAGAGAAATGATGTGCTCGAGTTCCAAGTGCTTGAGATGGAGGAGAATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAAMTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATACAAAATTCGAGTCTGAAAAATCCCAATTGCTCAAAGAACTAATCGAAGTCAAAAAGGCTCATGCTGCTCAACTTGAAAATATTGCCTCTATCAGAAAGGAACTTGAAGAGCACAAGTCTGCTGCTCCAGCCGCCAATGCTTCAGTATCCGAGTCAGAGAAAGTGAAGACCATTCAAGAGAAACTAGAAAAAGCTGAATCTGCCAATGTTACAGTAAGAAATTGTTCAATTACGCAGAGAGTTAATCCAATTTTCAGATTAATGAGGAACTAAGGTCGGCGTCGAAGGAACTTGGAAAGATTCGATTCCAAATGCAAGGGAAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCAGCACTGATAGAATGTCTTA</pcr_primer_p1>
		<pcr_primer_p2>CAGACTCGAATTTTGTATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>389</pcr_amplicon_size>
		<canonical_amplicon>ACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATACAAAATTCGAGTCTG</canonical_amplicon>
		<polymorphic_amplicon>ACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAAMTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATACAAAATTCGAGTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14601</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>311920</contig_pos>
        <strand>+</strand>
        <context>tcayggtATA[C/T]GTTTTTGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATA</left_flank>
        <right_flank>GTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTGAAACAACAAATTGCGTCGCAAACCGAGAGAAATGATGTGCTCGAGTTCCAAGTGCTTGAGATGGAGGAGAATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATACAAAATTCGAGTCTGAAAAATCCCAATTGCTCAAAGAACTAATCGAAGTCAAAAAGGCTCATGCTGCTCAACTTGAAAATATTGCCTCTATCAGAAAGGAACTTGAAGAGCACAAGTCTGCTGCTCCAGCCGCCAATGCTTCAGTATCCGAGTCAGAGAAAGTGAAGACCATTCAAGAGAAACTAGAAAAAGCTGAATCTGCCAATGTTACAGTAAGAAATTGTTCAATTACGCAGAGAGTTAATCCAATTTTCAGATTAATGAGGAACTAAGGTCGGCGTCGAAGGAACTTGGAAAGATTCGATTCCAAATG</canonical>
            <polymorphic>ACTTGAAACAACAAATTGCGTCGCAAACCGAGAGAAATGATGTGCTCGAGTTCCAAGTGCTTGAGATGGAGGAGAATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATAYGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATACAAAATTCGAGTCTGAAAAATCCCAATTGCTCAAAGAACTAATCGAAGTCAAAAAGGCTCATGCTGCTCAACTTGAAAATATTGCCTCTATCAGAAAGGAACTTGAAGAGCACAAGTCTGCTGCTCCAGCCGCCAATGCTTCAGTATCCGAGTCAGAGAAAGTGAAGACCATTCAAGAGAAACTAGAAAAAGCTGAATCTGCCAATGTTACAGTAAGAAATTGTTCAATTACGCAGAGAGTTAATCCAATTTTCAGATTAATGAGGAACTAAGGTCGGCGTCGAAGGAACTTGGAAAGATTCGATTCCAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCAGCACTGATAGAATGTCTTA</pcr_primer_p1>
		<pcr_primer_p2>CAGACTCGAATTTTGTATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>389</pcr_amplicon_size>
		<canonical_amplicon>ACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATACAAAATTCGAGTCTG</canonical_amplicon>
		<polymorphic_amplicon>ACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATAYGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATACAAAATTCGAGTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14602</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>312088</contig_pos>
        <strand>+</strand>
        <context>TATTCCAGGA[A/G]ACGCTTGCCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGA</left_flank>
        <right_flank>ACGCTTGCCGAGAAAAATACAAAATTCGAGTCTGAAAAATCCCAATTGCT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATACAAAATTCGAGTCTGAAAAATCCCAATTGCTCAAAGAACTAATCGAAGTCAAAAAGGCTCATGCTGCTCAACTTGAAAATATTGCCTCTATCAGAAAGGAACTTGAAGAGCACAAGTCTGCTGCTCCAGCCGCCAATGCTTCAGTATCCGAGTCAGAGAAAGTGAAGACCATTCAAGAGAAACTAGAAAAAGCTGAATCTGCCAATGTTACAGTAAGAAATTGTTCAATTACGCAGAGAGTTAATCCAATTTTCAGATTAATGAGGAACTAAGGTCGGCGTCGAAGGAACTTGGAAAGATTCGATTCCAAATGCAAGGGAAAGAAAGCGACTTAACTAGAGAGAGAAAAATGACAGAGGCTCTCAGCGCGTATGTTTCTGAAATTTAGAAGTTAAATTGAATAATGTTTCTTTTTTCAGACAACTGCAATCAGTAGTGTCCTCATCTCAAGAAGAGGCATTGAAAAAAGAAGAGGAACTAA</canonical>
            <polymorphic>ATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGARACGCTTGCCGAGAAAAATACAAAATTCGAGTCTGAAAAATCCCAATTGCTCAAAGAACTAATCGAAGTCAAAAAGGCTCATGCTGCTCAACTTGAAAATATTGCCTCTATCAGAAAGGAACTTGAAGAGCACAAGTCTGCTGCTCCAGCCGCCAATGCTTCAGTATCCGAGTCAGAGAAAGTGAAGACCATTCAAGAGAAACTAGAAAAAGCTGAATCTGCCAATGTTACAGTAAGAAATTGTTCAATTACGCAGAGAGTTAATCCAATTTTCAGATTAATGAGGAACTAAGGTCGGCGTCGAAGGAACTTGGAAAGATTCGATTCCAAATGCAAGGGAAAGAAAGCGACTTAACTAGAGAGAGAAAAATGACAGAGGCTCTCAGCGCGTATGTTTCTGAAATTTAGAAGTTAAATTGAATAATGTTTCTTTTTTCAGACAACTGCAATCAGTAGTGTCCTCATCTCAAGAAGAGGCATTGAAAAAAGAAGAGGAACTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACATCCTTTGATTGACTGTAA</pcr_primer_p1>
		<pcr_primer_p2>TGATAGAGGCAATATTTTCAAGT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>AAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATACAAAATTCGAGTCTGAAAAATCCCAATTGCTCAAAGAACTAATCGAAGTCAAAAAGGCTCATGCTGCTCAACTTGAAAATATTGCCTCTATCA</canonical_amplicon>
		<polymorphic_amplicon>AAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGARACGCTTGCCGAGAAAAATACAAAATTCGAGTCTGAAAAATCCCAATTGCTCAAAGAACTAATCGAAGTCAAAAAGGCTCATGCTGCTCAACTTGAAAATATTGCCTCTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14603</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>312068</contig_pos>
        <strand>+</strand>
        <context>TTTTAATACC[C/T]AAAACTGTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACC</left_flank>
        <right_flank>AAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATACAAAATTCGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATACAAAATTCGAGTCTGAAAAATCCCAATTGCTCAAAGAACTAATCGAAGTCAAAAAGGCTCATGCTGCTCAACTTGAAAATATTGCCTCTATCAGAAAGGAACTTGAAGAGCACAAGTCTGCTGCTCCAGCCGCCAATGCTTCAGTATCCGAGTCAGAGAAAGTGAAGACCATTCAAGAGAAACTAGAAAAAGCTGAATCTGCCAATGTTACAGTAAGAAATTGTTCAATTACGCAGAGAGTTAATCCAATTTTCAGATTAATGAGGAACTAAGGTCGGCGTCGAAGGAACTTGGAAAGATTCGATTCCAAATGCAAGGGAAAGAAAGCGACTTAACTAGAGAGAGAAAAATGACAGAGGCTCTCAGCGCGTATGTTTCTGAAATTTAGAAGTTAAATTGAATAATGTTTCTTTTTTCAGACAACTGCAATCAGTAGTGTCCTCATCTCAAGAAGAGGCATT</canonical>
            <polymorphic>TCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCYAAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATACAAAATTCGAGTCTGAAAAATCCCAATTGCTCAAAGAACTAATCGAAGTCAAAAAGGCTCATGCTGCTCAACTTGAAAATATTGCCTCTATCAGAAAGGAACTTGAAGAGCACAAGTCTGCTGCTCCAGCCGCCAATGCTTCAGTATCCGAGTCAGAGAAAGTGAAGACCATTCAAGAGAAACTAGAAAAAGCTGAATCTGCCAATGTTACAGTAAGAAATTGTTCAATTACGCAGAGAGTTAATCCAATTTTCAGATTAATGAGGAACTAAGGTCGGCGTCGAAGGAACTTGGAAAGATTCGATTCCAAATGCAAGGGAAAGAAAGCGACTTAACTAGAGAGAGAAAAATGACAGAGGCTCTCAGCGCGTATGTTTCTGAAATTTAGAAGTTAAATTGAATAATGTTTCTTTTTTCAGACAACTGCAATCAGTAGTGTCCTCATCTCAAGAAGAGGCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACATCCTTTGATTGACTGTAA</pcr_primer_p1>
		<pcr_primer_p2>TGATAGAGGCAATATTTTCAAGT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>AAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATACAAAATTCGAGTCTGAAAAATCCCAATTGCTCAAAGAACTAATCGAAGTCAAAAAGGCTCATGCTGCTCAACTTGAAAATATTGCCTCTATCA</canonical_amplicon>
		<polymorphic_amplicon>AAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCYAAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATACAAAATTCGAGTCTGAAAAATCCCAATTGCTCAAAGAACTAATCGAAGTCAAAAAGGCTCATGCTGCTCAACTTGAAAATATTGCCTCTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14604</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>315301</contig_pos>
        <strand></strand>
        <context>CTCTTCTATC[T/C]TTTCTtcttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAGCGTTCATCCGTGCCTACGTGCATCCTCCCAGATGTTCCTCTTCTATC</left_flank>
        <right_flank>TTTCTTCTTTCTCTATCTCTCTCTCTCTCTCTCCCTCTCCCTCTTCTCCC</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAATTAGAAAAGTAAAAAATTTTTTAAAACTTTGAAAATTCAAAAGTTTTTGAAAATTTGTGAATGTTCAGACAAATATTTCCGAAGGGAATAACGAAAAACGTTCATCCAGAAATTCTAGAATTTTAATTTTTGCATAAACCGCTGAACATTTTTTCGAGTTTCTGAAAACCCGAAAAATTATAAACTTTCACTTTTTTTTTTGAATCCCAAATAAAATCAAAATGTCAATTTTATGAATCTCTCTCTCTCTATACAACTTCCCAGGTTTAATGCTCCGTGTGTGGGGGAAAAAGTTTCGGAACTTTTCCAAACCTTTTCAACAAAAAATCCAACAAGCATTTCACAGAAGCCATCAATAATCAAAACGCTACAAAAAAGGCATCATCCTTTTCGGAACATGTATAATTGTCAGCTACTCAGTTATTCACTACTATTAGTATAATTAGCGTTCATCCGTGCCTACGTGCATCCTCCCAGATGTTCCTCTTCTATCTTTTCTTCTTTCTCTATCTCTCTCTCTCTCTCTCCCTCTCCCTCTTCTCCCAATACTCTTGACCCAGATTCTATTACACTAATTTTCGTATTGATTGACGTTTTCTGATACTTCTAGTATCTCTACACAGTTGCCAACTTTTATCAGTTCGCTAGTCTTCCTAGCTTTTCTCAACTGTTTCAAAATAAAACAACTAAAAACCGAAAGTGTCCAAAGAAGTCCATATTTTTCCTGGCATATGTGTCCTTCACGAAACAGTTGGCCGAATGTCTGCATCTCTCTCCTCTGCCTTATGTCTCAATCTCTAATCCTCAGAATTCCTATATCTCCCACTTCCTTCTGCTTCTTCTTCTTCTTCTGTCTTCATTCATATGCTTCTTATTCTTTTTCGTCTTCAGTTTCTAAATTAGTACTTGAACAGTGGTCGTCATTTTCATCTGGTTTTGAGAGGAAAGAGGAAGAAGCGTCATACGTCTGCTTATTTTCTTCATTGGTTTTCTC</canonical>
            <polymorphic>TTAAAATTAGAAAAGTAAAAAATTTTTTAAAACTTTGAAAATTCAAAAGTTTTTGAAAATTTGTGAATGTTCAGACAAATATTTCCGAAGGGAATAACGAAAAACGTTCATCCAGAAATTCTAGAATTTTAATTTTTGCATAAACCGCTGAACATTTTTTCGAGTTTCTGAAAACCCGAAAAATTATAAACTTTCACTTTTTTTTTTGAATCCCAAATAAAATCAAAATGTCAATTTTATGAATCTCTCTCTCTCTATACAACTTCCCAGGTTTAATGCTCCGTGTGTGGGGGAAAAAGTTTCGGAACTTTTCCAAACCTTTTCAACAAAAAATCCAACAAGCATTTCACAGAAGCCATCAATAATCAAAACGCTACAAAAAAGGCATCATCCTTTTCGGAACATGTATAATTGTCAGCTACTCAGTTATTCACTACTATTAGTATAATTAGCGTTCATCCGTGCCTACGTGCATCCTCCCAGATGTTCCTCTTCTATCYTTTCTTCTTTCTCTATCTCTCTCTCTCTCTCTCCCTCTCCCTCTTCTCCCAATACTCTTGACCCAGATTCTATTACACTAATTTTCGTATTGATTGACGTTTTCTGATACTTCTAGTATCTCTACACAGTTGCCAACTTTTATCAGTTCGCTAGTCTTCCTAGCTTTTCTCAACTGTTTCAAAATAAAACAACTAAAAACCGAAAGTGTCCAAAGAAGTCCATATTTTTCCTGGCATATGTGTCCTTCACGAAACAGTTGGCCGAATGTCTGCATCTCTCTCCTCTGCCTTATGTCTCAATCTCTAATCCTCAGAATTCCTATATCTCCCACTTCCTTCTGCTTCTTCTTCTTCTTCTGTCTTCATTCATATGCTTCTTATTCTTTTTCGTCTTCAGTTTCTAAATTAGTACTTGAACAGTGGTCGTCATTTTCATCTGGTTTTGAGAGGAAAGAGGAAGAAGCGTCATACGTCTGCTTATTTTCTTCATTGGTTTTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGCCATCAATAATCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>ACGTCAATCAATACGAAAATTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAGCCATCAATAATCAAAACGCTACAAAAAAGGCATCATCCTTTTCGGAACATGTATAATTGTCAGCTACTCAGTTATTCACTACTATTAGTATAATTAGCGTTCATCCGTGCCTACGTGCATCCTCCCAGATGTTCCTCTTCTATCTTTTCTTCTTTCTCTATCTCTCTCTCTCTCTCTCCCTCTCCCTCTTCTCCCAATACTCTTGACCCAGATTCTATTACACTAATTTTCGTATTGATTGACGT</canonical_amplicon>
		<polymorphic_amplicon>AGAAGCCATCAATAATCAAAACGCTACAAAAAAGGCATCATCCTTTTCGGAACATGTATAATTGTCAGCTACTCAGTTATTCACTACTATTAGTATAATTAGCGTTCATCCGTGCCTACGTGCATCCTCCCAGATGTTCCTCTTCTATCYTTTCTTCTTTCTCTATCTCTCTCTCTCTCTCTCCCTCTCCCTCTTCTCCCAATACTCTTGACCCAGATTCTATTACACTAATTTTCGTATTGATTGACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14605</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>315426</contig_pos>
        <strand>+</strand>
        <context>AGTATCTCTA[A/C]ACAGTTGCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACACTAATTTTCGTATTGATTGACGTTTTCTGATACTTCTAGTATCTCTA</left_flank>
        <right_flank>ACAGTTGCCAACTTTTATCAGTTCGCTAGTCTTCCTAGCTTTTCTCAACT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTAATTTTTGCATAAACCGCTGAACATTTTTTCGAGTTTCTGAAAACCCGAAAAATTATAAACTTTCACTTTTTTTTTTGAATCCCAAATAAAATCAAAATGTCAATTTTATGAATCTCTCTCTCTCTATACAACTTCCCAGGTTTAATGCTCCGTGTGTGGGGGAAAAAGTTTCGGAACTTTTCCAAACCTTTTCAACAAAAAATCCAACAAGCATTTCACAGAAGCCATCAATAATCAAAACGCTACAAAAAAGGCATCATCCTTTTCGGAACATGTATAATTGTCAGCTACTCAGTTATTCACTACTATTAGTATAATTAGCGTTCATCCGTGCCTACGTGCATCCTCCCAGATGTTCCTCTTCTATCTTTTCTTCTTTCTCTATCTCTCTCTCTCTCTCTCCCTCTCCCTCTTCTCCCAATACTCTTGACCCAGATTCTATTACACTAATTTTCGTATTGATTGACGTTTTCTGATACTTCTAGTATCTCTACACAGTTGCCAACTTTTATCAGTTCGCTAGTCTTCCTAGCTTTTCTCAACTGTTTCAAAATAAAACAACTAAAAACCGAAAGTGTCCAAAGAAGTCCATATTTTTCCTGGCATATGTGTCCTTCACGAAACAGTTGGCCGAATGTCTGCATCTCTCTCCTCTGCCTTATGTCTCAATCTCTAATCCTCAGAATTCCTATATCTCCCACTTCCTTCTGCTTCTTCTTCTTCTTCTGTCTTCATTCATATGCTTCTTATTCTTTTTCGTCTTCAGTTTCTAAATTAGTACTTGAACAGTGGTCGTCATTTTCATCTGGTTTTGAGAGGAAAGAGGAAGAAGCGTCATACGTCTGCTTATTTTCTTCATTGGTTTTCTCGTTTTCATTGACTTCCCCCCCATATATCTCTATAACCGTTCTCTGAGTGTCTTCTGTTATCGGTTTTGTTTTGGCGAACTGGTTTTGGATGGGTGTCGATGCAATCGTATATCTGATTGGATTGA</canonical>
            <polymorphic>ATTTTAATTTTTGCATAAACCGCTGAACATTTTTTCGAGTTTCTGAAAACCCGAAAAATTATAAACTTTCACTTTTTTTTTTGAATCCCAAATAAAATCAAAATGTCAATTTTATGAATCTCTCTCTCTCTATACAACTTCCCAGGTTTAATGCTCCGTGTGTGGGGGAAAAAGTTTCGGAACTTTTCCAAACCTTTTCAACAAAAAATCCAACAAGCATTTCACAGAAGCCATCAATAATCAAAACGCTACAAAAAAGGCATCATCCTTTTCGGAACATGTATAATTGTCAGCTACTCAGTTATTCACTACTATTAGTATAATTAGCGTTCATCCGTGCCTACGTGCATCCTCCCAGATGTTCCTCTTCTATCTTTTCTTCTTTCTCTATCTCTCTCTCTCTCTCTCCCTCTCCCTCTTCTCCCAATACTCTTGACCCAGATTCTATTACACTAATTTTCGTATTGATTGACGTTTTCTGATACTTCTAGTATCTCTAMACAGTTGCCAACTTTTATCAGTTCGCTAGTCTTCCTAGCTTTTCTCAACTGTTTCAAAATAAAACAACTAAAAACCGAAAGTGTCCAAAGAAGTCCATATTTTTCCTGGCATATGTGTCCTTCACGAAACAGTTGGCCGAATGTCTGCATCTCTCTCCTCTGCCTTATGTCTCAATCTCTAATCCTCAGAATTCCTATATCTCCCACTTCCTTCTGCTTCTTCTTCTTCTTCTGTCTTCATTCATATGCTTCTTATTCTTTTTCGTCTTCAGTTTCTAAATTAGTACTTGAACAGTGGTCGTCATTTTCATCTGGTTTTGAGAGGAAAGAGGAAGAAGCGTCATACGTCTGCTTATTTTCTTCATTGGTTTTCTCGTTTTCATTGACTTCCCCCCCATATATCTCTATAACCGTTCTCTGAGTGTCTTCTGTTATCGGTTTTGTTTTGGCGAACTGGTTTTGGATGGGTGTCGATGCAATCGTATATCTGATTGGATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>127 105 91 89 84 82 82 71 60 49 46 34 31 30 8 7 2 2</canonical_bands>
                <polymorphic_bands>131 127 105 91 89 84 82 71 60 46 34 31 30 8 7 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTTGACCCAGATTCTATTACA</pcr_primer_p1>
		<pcr_primer_p2>GAGATTGAGACATAAGGCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTTGACCCAGATTCTATTACACTAATTTTCGTATTGATTGACGTTTTCTGATACTTCTAGTATCTCTACACAGTTGCCAACTTTTATCAGTTCGCTAGTCTTCCTAGCTTTTCTCAACTGTTTCAAAATAAAACAACTAAAAACCGAAAGTGTCCAAAGAAGTCCATATTTTTCCTGGCATATGTGTCCTTCACGAAACAGTTGGCCGAATGTCTGCATCTCTCTCCTCTGCCTTATGTCTCAATCTC</canonical_amplicon>
		<polymorphic_amplicon>CTCTTGACCCAGATTCTATTACACTAATTTTCGTATTGATTGACGTTTTCTGATACTTCTAGTATCTCTAMACAGTTGCCAACTTTTATCAGTTCGCTAGTCTTCCTAGCTTTTCTCAACTGTTTCAAAATAAAACAACTAAAAACCGAAAGTGTCCAAAGAAGTCCATATTTTTCCTGGCATATGTGTCCTTCACGAAACAGTTGGCCGAATGTCTGCATCTCTCTCCTCTGCCTTATGTCTCAATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14606</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>315492</contig_pos>
        <strand>+</strand>
        <context>AAAATAAAAC[A/G]ACTAAAAACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATCAGTTCGCTAGTCTTCCTAGCTTTTCTCAACTGTTTCAAAATAAAAC</left_flank>
        <right_flank>ACTAAAAACCGAAAGTGTCCAAAGAAGTCCATATTTTTCCTGGCATATGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCACTTTTTTTTTTGAATCCCAAATAAAATCAAAATGTCAATTTTATGAATCTCTCTCTCTCTATACAACTTCCCAGGTTTAATGCTCCGTGTGTGGGGGAAAAAGTTTCGGAACTTTTCCAAACCTTTTCAACAAAAAATCCAACAAGCATTTCACAGAAGCCATCAATAATCAAAACGCTACAAAAAAGGCATCATCCTTTTCGGAACATGTATAATTGTCAGCTACTCAGTTATTCACTACTATTAGTATAATTAGCGTTCATCCGTGCCTACGTGCATCCTCCCAGATGTTCCTCTTCTATCTTTTCTTCTTTCTCTATCTCTCTCTCTCTCTCTCCCTCTCCCTCTTCTCCCAATACTCTTGACCCAGATTCTATTACACTAATTTTCGTATTGATTGACGTTTTCTGATACTTCTAGTATCTCTACACAGTTGCCAACTTTTATCAGTTCGCTAGTCTTCCTAGCTTTTCTCAACTGTTTCAAAATAAAACAACTAAAAACCGAAAGTGTCCAAAGAAGTCCATATTTTTCCTGGCATATGTGTCCTTCACGAAACAGTTGGCCGAATGTCTGCATCTCTCTCCTCTGCCTTATGTCTCAATCTCTAATCCTCAGAATTCCTATATCTCCCACTTCCTTCTGCTTCTTCTTCTTCTTCTGTCTTCATTCATATGCTTCTTATTCTTTTTCGTCTTCAGTTTCTAAATTAGTACTTGAACAGTGGTCGTCATTTTCATCTGGTTTTGAGAGGAAAGAGGAAGAAGCGTCATACGTCTGCTTATTTTCTTCATTGGTTTTCTCGTTTTCATTGACTTCCCCCCCATATATCTCTATAACCGTTCTCTGAGTGTCTTCTGTTATCGGTTTTGTTTTGGCGAACTGGTTTTGGATGGGTGTCGATGCAATCGTATATCTGATTGGATTGATATCAAAATACTGATCAAGATTGTGTGGTTTGCAAAGGAAGATTCCAGATATTCAAGATATTTTCA</canonical>
            <polymorphic>TTTCACTTTTTTTTTTGAATCCCAAATAAAATCAAAATGTCAATTTTATGAATCTCTCTCTCTCTATACAACTTCCCAGGTTTAATGCTCCGTGTGTGGGGGAAAAAGTTTCGGAACTTTTCCAAACCTTTTCAACAAAAAATCCAACAAGCATTTCACAGAAGCCATCAATAATCAAAACGCTACAAAAAAGGCATCATCCTTTTCGGAACATGTATAATTGTCAGCTACTCAGTTATTCACTACTATTAGTATAATTAGCGTTCATCCGTGCCTACGTGCATCCTCCCAGATGTTCCTCTTCTATCTTTTCTTCTTTCTCTATCTCTCTCTCTCTCTCTCCCTCTCCCTCTTCTCCCAATACTCTTGACCCAGATTCTATTACACTAATTTTCGTATTGATTGACGTTTTCTGATACTTCTAGTATCTCTACACAGTTGCCAACTTTTATCAGTTCGCTAGTCTTCCTAGCTTTTCTCAACTGTTTCAAAATAAAACRACTAAAAACCGAAAGTGTCCAAAGAAGTCCATATTTTTCCTGGCATATGTGTCCTTCACGAAACAGTTGGCCGAATGTCTGCATCTCTCTCCTCTGCCTTATGTCTCAATCTCTAATCCTCAGAATTCCTATATCTCCCACTTCCTTCTGCTTCTTCTTCTTCTTCTGTCTTCATTCATATGCTTCTTATTCTTTTTCGTCTTCAGTTTCTAAATTAGTACTTGAACAGTGGTCGTCATTTTCATCTGGTTTTGAGAGGAAAGAGGAAGAAGCGTCATACGTCTGCTTATTTTCTTCATTGGTTTTCTCGTTTTCATTGACTTCCCCCCCATATATCTCTATAACCGTTCTCTGAGTGTCTTCTGTTATCGGTTTTGTTTTGGCGAACTGGTTTTGGATGGGTGTCGATGCAATCGTATATCTGATTGGATTGATATCAAAATACTGATCAAGATTGTGTGGTTTGCAAAGGAAGATTCCAGATATTCAAGATATTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTTGACCCAGATTCTATTACA</pcr_primer_p1>
		<pcr_primer_p2>GAGATTGAGACATAAGGCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTTGACCCAGATTCTATTACACTAATTTTCGTATTGATTGACGTTTTCTGATACTTCTAGTATCTCTACACAGTTGCCAACTTTTATCAGTTCGCTAGTCTTCCTAGCTTTTCTCAACTGTTTCAAAATAAAACAACTAAAAACCGAAAGTGTCCAAAGAAGTCCATATTTTTCCTGGCATATGTGTCCTTCACGAAACAGTTGGCCGAATGTCTGCATCTCTCTCCTCTGCCTTATGTCTCAATCTC</canonical_amplicon>
		<polymorphic_amplicon>CTCTTGACCCAGATTCTATTACACTAATTTTCGTATTGATTGACGTTTTCTGATACTTCTAGTATCTCTACACAGTTGCCAACTTTTATCAGTTCGCTAGTCTTCCTAGCTTTTCTCAACTGTTTCAAAATAAAACRACTAAAAACCGAAAGTGTCCAAAGAAGTCCATATTTTTCCTGGCATATGTGTCCTTCACGAAACAGTTGGCCGAATGTCTGCATCTCTCTCCTCTGCCTTATGTCTCAATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14607</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>315575</contig_pos>
        <strand>+</strand>
        <context>GAATGTCTGC[A/G]TCTCTCTCCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTTCCTGGCATATGTGTCCTTCACGAAACAGTTGGCCGAATGTCTGC</left_flank>
        <right_flank>TCTCTCTCCTCTGCCTTATGTCTCAATCTCTAATCCTCAGAATTCCTATA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGCTCCGTGTGTGGGGGAAAAAGTTTCGGAACTTTTCCAAACCTTTTCAACAAAAAATCCAACAAGCATTTCACAGAAGCCATCAATAATCAAAACGCTACAAAAAAGGCATCATCCTTTTCGGAACATGTATAATTGTCAGCTACTCAGTTATTCACTACTATTAGTATAATTAGCGTTCATCCGTGCCTACGTGCATCCTCCCAGATGTTCCTCTTCTATCTTTTCTTCTTTCTCTATCTCTCTCTCTCTCTCTCCCTCTCCCTCTTCTCCCAATACTCTTGACCCAGATTCTATTACACTAATTTTCGTATTGATTGACGTTTTCTGATACTTCTAGTATCTCTACACAGTTGCCAACTTTTATCAGTTCGCTAGTCTTCCTAGCTTTTCTCAACTGTTTCAAAATAAAACAACTAAAAACCGAAAGTGTCCAAAGAAGTCCATATTTTTCCTGGCATATGTGTCCTTCACGAAACAGTTGGCCGAATGTCTGCATCTCTCTCCTCTGCCTTATGTCTCAATCTCTAATCCTCAGAATTCCTATATCTCCCACTTCCTTCTGCTTCTTCTTCTTCTTCTGTCTTCATTCATATGCTTCTTATTCTTTTTCGTCTTCAGTTTCTAAATTAGTACTTGAACAGTGGTCGTCATTTTCATCTGGTTTTGAGAGGAAAGAGGAAGAAGCGTCATACGTCTGCTTATTTTCTTCATTGGTTTTCTCGTTTTCATTGACTTCCCCCCCATATATCTCTATAACCGTTCTCTGAGTGTCTTCTGTTATCGGTTTTGTTTTGGCGAACTGGTTTTGGATGGGTGTCGATGCAATCGTATATCTGATTGGATTGATATCAAAATACTGATCAAGATTGTGTGGTTTGCAAAGGAAGATTCCAGATATTCAAGATATTTTCAGCTAGTTTTTTCAGATGTTTGGCGCCTTTTTTATTGATTTGTTTCGTTTACTTCTACTAAGAATGAAACCATAATTCTATCGA</canonical>
            <polymorphic>AATGCTCCGTGTGTGGGGGAAAAAGTTTCGGAACTTTTCCAAACCTTTTCAACAAAAAATCCAACAAGCATTTCACAGAAGCCATCAATAATCAAAACGCTACAAAAAAGGCATCATCCTTTTCGGAACATGTATAATTGTCAGCTACTCAGTTATTCACTACTATTAGTATAATTAGCGTTCATCCGTGCCTACGTGCATCCTCCCAGATGTTCCTCTTCTATCTTTTCTTCTTTCTCTATCTCTCTCTCTCTCTCTCCCTCTCCCTCTTCTCCCAATACTCTTGACCCAGATTCTATTACACTAATTTTCGTATTGATTGACGTTTTCTGATACTTCTAGTATCTCTACACAGTTGCCAACTTTTATCAGTTCGCTAGTCTTCCTAGCTTTTCTCAACTGTTTCAAAATAAAACAACTAAAAACCGAAAGTGTCCAAAGAAGTCCATATTTTTCCTGGCATATGTGTCCTTCACGAAACAGTTGGCCGAATGTCTGCRTCTCTCTCCTCTGCCTTATGTCTCAATCTCTAATCCTCAGAATTCCTATATCTCCCACTTCCTTCTGCTTCTTCTTCTTCTTCTGTCTTCATTCATATGCTTCTTATTCTTTTTCGTCTTCAGTTTCTAAATTAGTACTTGAACAGTGGTCGTCATTTTCATCTGGTTTTGAGAGGAAAGAGGAAGAAGCGTCATACGTCTGCTTATTTTCTTCATTGGTTTTCTCGTTTTCATTGACTTCCCCCCCATATATCTCTATAACCGTTCTCTGAGTGTCTTCTGTTATCGGTTTTGTTTTGGCGAACTGGTTTTGGATGGGTGTCGATGCAATCGTATATCTGATTGGATTGATATCAAAATACTGATCAAGATTGTGTGGTTTGCAAAGGAAGATTCCAGATATTCAAGATATTTTCAGCTAGTTTTTTCAGATGTTTGGCGCCTTTTTTATTGATTTGTTTCGTTTACTTCTACTAAGAATGAAACCATAATTCTATCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>329 300 198 117 56</canonical_bands>
                <polymorphic_bands>629 198 117 56</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGATTGACGTTTTCTGATACTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTGGGAGATATAGGAATTCTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTGATTGACGTTTTCTGATACTTCTAGTATCTCTACACAGTTGCCAACTTTTATCAGTTCGCTAGTCTTCCTAGCTTTTCTCAACTGTTTCAAAATAAAACAACTAAAAACCGAAAGTGTCCAAAGAAGTCCATATTTTTCCTGGCATATGTGTCCTTCACGAAACAGTTGGCCGAATGTCTGCATCTCTCTCCTCTGCCTTATGTCTCAATCTCTAATCCTCAGAATTCCTATATCTCCCACTT</canonical_amplicon>
		<polymorphic_amplicon>TTGATTGACGTTTTCTGATACTTCTAGTATCTCTACACAGTTGCCAACTTTTATCAGTTCGCTAGTCTTCCTAGCTTTTCTCAACTGTTTCAAAATAAAACAACTAAAAACCGAAAGTGTCCAAAGAAGTCCATATTTTTCCTGGCATATGTGTCCTTCACGAAACAGTTGGCCGAATGTCTGCRTCTCTCTCCTCTGCCTTATGTCTCAATCTCTAATCCTCAGAATTCCTATATCTCCCACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14662</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>315691</contig_pos>
        <strand></strand>
        <context>attctttttc[G/C]tcttcAGTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TGCTTCTTCTTCTTCTTCTGTCTTCATTCATATGCTTCTTATTCTTTTTC</left_flank>
        <right_flank>TCTTCAGTTTCTAAATTAGTACTTGAACAGTGGTCGTCATTTTCATCTGG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTTTTCGGAACATGTATAATTGTCAGCTACTCAGTTATTCACTACTATTAGTATAATTAGCGTTCATCCGTGCCTACGTGCATCCTCCCAGATGTTCCTCTTCTATCTTTTCTTCTTTCTCTATCTCTCTCTCTCTCTCTCCCTCTCCCTCTTCTCCCAATACTCTTGACCCAGATTCTATTACACTAATTTTCGTATTGATTGACGTTTTCTGATACTTCTAGTATCTCTACACAGTTGCCAACTTTTATCAGTTCGCTAGTCTTCCTAGCTTTTCTCAACTGTTTCAAAATAAAACAACTAAAAACCGAAAGTGTCCAAAGAAGTCCATATTTTTCCTGGCATATGTGTCCTTCACGAAACAGTTGGCCGAATGTCTGCATCTCTCTCCTCTGCCTTATGTCTCAATCTCTAATCCTCAGAATTCCTATATCTCCCACTTCCTTCTGCTTCTTCTTCTTCTTCTGTCTTCATTCATATGCTTCTTATTCTTTTTCGTCTTCAGTTTCTAAATTAGTACTTGAACAGTGGTCGTCATTTTCATCTGGTTTTGAGAGGAAAGAGGAAGAAGCGTCATACGTCTGCTTATTTTCTTCATTGGTTTTCTCGTTTTCATTGACTTCCCCCCCATATATCTCTATAACCGTTCTCTGAGTGTCTTCTGTTATCGGTTTTGTTTTGGCGAACTGGTTTTGGATGGGTGTCGATGCAATCGTATATCTGATTGGATTGATATCAAAATACTGATCAAGATTGTGTGGTTTGCAAAGGAAGATTCCAGATATTCAAGATATTTTCAGCTAGTTTTTTCAGATGTTTGGCGCCTTTTTTATTGATTTGTTTCGTTTACTTCTACTAAGAATGAAACCATAATTCTATCGATACCAAGAAACAAGTTTGGGAACCCCCGCGCATAAATATATTTTATTATTCCTCTCCTTCTCCGCCATTTTTCATTTCTCCATGTGTTCCTTTATTTATTCAGCTTCTCCCCTTTT</canonical>
            <polymorphic>TCCTTTTCGGAACATGTATAATTGTCAGCTACTCAGTTATTCACTACTATTAGTATAATTAGCGTTCATCCGTGCCTACGTGCATCCTCCCAGATGTTCCTCTTCTATCTTTTCTTCTTTCTCTATCTCTCTCTCTCTCTCTCCCTCTCCCTCTTCTCCCAATACTCTTGACCCAGATTCTATTACACTAATTTTCGTATTGATTGACGTTTTCTGATACTTCTAGTATCTCTACACAGTTGCCAACTTTTATCAGTTCGCTAGTCTTCCTAGCTTTTCTCAACTGTTTCAAAATAAAACAACTAAAAACCGAAAGTGTCCAAAGAAGTCCATATTTTTCCTGGCATATGTGTCCTTCACGAAACAGTTGGCCGAATGTCTGCATCTCTCTCCTCTGCCTTATGTCTCAATCTCTAATCCTCAGAATTCCTATATCTCCCACTTCCTTCTGCTTCTTCTTCTTCTTCTGTCTTCATTCATATGCTTCTTATTCTTTTTCSTCTTCAGTTTCTAAATTAGTACTTGAACAGTGGTCGTCATTTTCATCTGGTTTTGAGAGGAAAGAGGAAGAAGCGTCATACGTCTGCTTATTTTCTTCATTGGTTTTCTCGTTTTCATTGACTTCCCCCCCATATATCTCTATAACCGTTCTCTGAGTGTCTTCTGTTATCGGTTTTGTTTTGGCGAACTGGTTTTGGATGGGTGTCGATGCAATCGTATATCTGATTGGATTGATATCAAAATACTGATCAAGATTGTGTGGTTTGCAAAGGAAGATTCCAGATATTCAAGATATTTTCAGCTAGTTTTTTCAGATGTTTGGCGCCTTTTTTATTGATTTGTTTCGTTTACTTCTACTAAGAATGAAACCATAATTCTATCGATACCAAGAAACAAGTTTGGGAACCCCCGCGCATAAATATATTTTATTATTCCTCTCCTTCTCCGCCATTTTTCATTTCTCCATGTGTTCCTTTATTTATTCAGCTTCTCCCCTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTTTTCCTGGCATATGTGT</pcr_primer_p1>
		<pcr_primer_p2>GTATGACGCTTCTTCCTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATTTTTCCTGGCATATGTGTCCTTCACGAAACAGTTGGCCGAATGTCTGCATCTCTCTCCTCTGCCTTATGTCTCAATCTCTAATCCTCAGAATTCCTATATCTCCCACTTCCTTCTGCTTCTTCTTCTTCTTCTGTCTTCATTCATATGCTTCTTATTCTTTTTCGTCTTCAGTTTCTAAATTAGTACTTGAACAGTGGTCGTCATTTTCATCTGGTTTTGAGAGGAAAGAGGAAGAAGCGTCATAC</canonical_amplicon>
		<polymorphic_amplicon>ATATTTTTCCTGGCATATGTGTCCTTCACGAAACAGTTGGCCGAATGTCTGCATCTCTCTCCTCTGCCTTATGTCTCAATCTCTAATCCTCAGAATTCCTATATCTCCCACTTCCTTCTGCTTCTTCTTCTTCTTCTGTCTTCATTCATATGCTTCTTATTCTTTTTCSTCTTCAGTTTCTAAATTAGTACTTGAACAGTGGTCGTCATTTTCATCTGGTTTTGAGAGGAAAGAGGAAGAAGCGTCATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14668</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>315836</contig_pos>
        <strand>+</strand>
        <context>TATCTCTATA[A/T]CCGTTCTCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTCATTGGTTTTCTCGTTTTCATTGACTTCCCCCCCATATATCTCTATA</left_flank>
        <right_flank>CCGTTCTCTGAGTGTCTTCTGTTATCGGTTTTGTTTTGGCGAACTGGTTT</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCCCTCTTCTCCCAATACTCTTGACCCAGATTCTATTACACTAATTTTCGTATTGATTGACGTTTTCTGATACTTCTAGTATCTCTACACAGTTGCCAACTTTTATCAGTTCGCTAGTCTTCCTAGCTTTTCTCAACTGTTTCAAAATAAAACAACTAAAAACCGAAAGTGTCCAAAGAAGTCCATATTTTTCCTGGCATATGTGTCCTTCACGAAACAGTTGGCCGAATGTCTGCATCTCTCTCCTCTGCCTTATGTCTCAATCTCTAATCCTCAGAATTCCTATATCTCCCACTTCCTTCTGCTTCTTCTTCTTCTTCTGTCTTCATTCATATGCTTCTTATTCTTTTTCGTCTTCAGTTTCTAAATTAGTACTTGAACAGTGGTCGTCATTTTCATCTGGTTTTGAGAGGAAAGAGGAAGAAGCGTCATACGTCTGCTTATTTTCTTCATTGGTTTTCTCGTTTTCATTGACTTCCCCCCCATATATCTCTATAACCGTTCTCTGAGTGTCTTCTGTTATCGGTTTTGTTTTGGCGAACTGGTTTTGGATGGGTGTCGATGCAATCGTATATCTGATTGGATTGATATCAAAATACTGATCAAGATTGTGTGGTTTGCAAAGGAAGATTCCAGATATTCAAGATATTTTCAGCTAGTTTTTTCAGATGTTTGGCGCCTTTTTTATTGATTTGTTTCGTTTACTTCTACTAAGAATGAAACCATAATTCTATCGATACCAAGAAACAAGTTTGGGAACCCCCGCGCATAAATATATTTTATTATTCCTCTCCTTCTCCGCCATTTTTCATTTCTCCATGTGTTCCTTTATTTATTCAGCTTCTCCCCTTTTTCTAACAATACCAAAAGTATCCCATCAATCTAGGCGATTTGGAAGAAGCGACCTAATGCGATTAGAGACGACTACCTTTTCTGGGGCTTCTGAATCGATTGAATCGCTACGACTTCTTTTTTGTCTCGCGACACTTTCTTCTAGA</canonical>
            <polymorphic>TCTCCCTCTTCTCCCAATACTCTTGACCCAGATTCTATTACACTAATTTTCGTATTGATTGACGTTTTCTGATACTTCTAGTATCTCTACACAGTTGCCAACTTTTATCAGTTCGCTAGTCTTCCTAGCTTTTCTCAACTGTTTCAAAATAAAACAACTAAAAACCGAAAGTGTCCAAAGAAGTCCATATTTTTCCTGGCATATGTGTCCTTCACGAAACAGTTGGCCGAATGTCTGCATCTCTCTCCTCTGCCTTATGTCTCAATCTCTAATCCTCAGAATTCCTATATCTCCCACTTCCTTCTGCTTCTTCTTCTTCTTCTGTCTTCATTCATATGCTTCTTATTCTTTTTCGTCTTCAGTTTCTAAATTAGTACTTGAACAGTGGTCGTCATTTTCATCTGGTTTTGAGAGGAAAGAGGAAGAAGCGTCATACGTCTGCTTATTTTCTTCATTGGTTTTCTCGTTTTCATTGACTTCCCCCCCATATATCTCTATAWCCGTTCTCTGAGTGTCTTCTGTTATCGGTTTTGTTTTGGCGAACTGGTTTTGGATGGGTGTCGATGCAATCGTATATCTGATTGGATTGATATCAAAATACTGATCAAGATTGTGTGGTTTGCAAAGGAAGATTCCAGATATTCAAGATATTTTCAGCTAGTTTTTTCAGATGTTTGGCGCCTTTTTTATTGATTTGTTTCGTTTACTTCTACTAAGAATGAAACCATAATTCTATCGATACCAAGAAACAAGTTTGGGAACCCCCGCGCATAAATATATTTTATTATTCCTCTCCTTCTCCGCCATTTTTCATTTCTCCATGTGTTCCTTTATTTATTCAGCTTCTCCCCTTTTTCTAACAATACCAAAAGTATCCCATCAATCTAGGCGATTTGGAAGAAGCGACCTAATGCGATTAGAGACGACTACCTTTTCTGGGGCTTCTGAATCGATTGAATCGCTACGACTTCTTTTTTGTCTCGCGACACTTTCTTCTAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>498 163 118 93 81 47</canonical_bands>
                <polymorphic_bands>616 163 93 81 47</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTAGTACTTGAACAGTGGTCGT</pcr_primer_p1>
		<pcr_primer_p2>AAACCACACAATCTTGATCAGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTAGTACTTGAACAGTGGTCGTCATTTTCATCTGGTTTTGAGAGGAAAGAGGAAGAAGCGTCATACGTCTGCTTATTTTCTTCATTGGTTTTCTCGTTTTCATTGACTTCCCCCCCATATATCTCTATAACCGTTCTCTGAGTGTCTTCTGTTATCGGTTTTGTTTTGGCGAACTGGTTTTGGATGGGTGTCGATGCAATCGTATATCTGATTGGATTGATATCAAAATACTGATCAAGATTGTGTGGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTAGTACTTGAACAGTGGTCGTCATTTTCATCTGGTTTTGAGAGGAAAGAGGAAGAAGCGTCATACGTCTGCTTATTTTCTTCATTGGTTTTCTCGTTTTCATTGACTTCCCCCCCATATATCTCTATAWCCGTTCTCTGAGTGTCTTCTGTTATCGGTTTTGTTTTGGCGAACTGGTTTTGGATGGGTGTCGATGCAATCGTATATCTGATTGGATTGATATCAAAATACTGATCAAGATTGTGTGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14669</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>318776</contig_pos>
        <strand>+</strand>
        <context>CCACCAACCA[C/T]CAATTTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTATTAAGGCCCAGGTACGTCTACTAGTTCAAAAGCTCACCCACCAACCA</left_flank>
        <right_flank>CAATTTTTTTCAGTTCGTAACTGCTTCCGCTGGAGTGTTGGGCTCATGTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGAATATTGCTAAATTTTAAAATTTTGAATGTTGAAAATTCTGAATTTAAAAAATCCTGAAATTCCAAAATTTTCAAAATCAAAGTGTTCCAATTTTTCGAAATATTTCCTACCGGATTAATTTGAAACTCTGAAAATTTCAAAATCTTAATATTCCGAATTTCACAAATTTTGAGTTTTTGGGAATTTCGAATATCTGATTATTTTGAAATTTTGAAATTCCAATCTTTGCAGAATCGGAACATTCTGAAGTGTCGAAACTCGCTATTTTCAATATCCCGAATTCCAAAAAAGCTTTTCCAAGAATCCTATATAAAAAGTTTCAAGATCAACTCGAAATATTTGCAGTTCGGATTCCTTACCACTATCACCATTCTCCTCCACGAGATTCCACACGAAATCAGTGATTTCGCTATCCTCCTCCGCGCCGATTTCGACCGAGTTGCTGCTATTAAGGCCCAGGTACGTCTACTAGTTCAAAAGCTCACCCACCAACCACCAATTTTTTTCAGTTCGTAACTGCTTCCGCTGGAGTGTTGGGCTCATGTGTAGCACTTTCTCTTCACACCTCCAACGTGCCCGTCATTGAGACTCTCCTTCCGTTCACTGCTGGCGGTTTTCTGAATATTGCGCTGGTTCAGATTTTGCCAGAACTTCACGAAGAGAGATCTCCTATGTGAGTCTAACTTATAAAATTAAATGTTTTTTTTTTACTTTTATTTCAGTCAAAGTTTCAAGCAGTGGGCCATGATCGTGACTGGAGTCTTGTCAATGATGTGTCTCAACAATTTAAGCTTCTAAAAAATTCTGTTCTATATTTTTCTTTGTATTTTTTAAAAATCTCTTCGTGCCTTCCAAAAATGGTTAGTGAATATATCAGTGCCTTTTTCCATATAAAATACCGCTCGTCGTGCTTGCCAATAGTAATGTAAATCTGTTCCCTTTTTTTTTGTTCTGCCTTTTTGTAAACCTACCGGTCCTCTTTACCGGTCGACCAAC</canonical>
            <polymorphic>CGGAATATTGCTAAATTTTAAAATTTTGAATGTTGAAAATTCTGAATTTAAAAAATCCTGAAATTCCAAAATTTTCAAAATCAAAGTGTTCCAATTTTTCGAAATATTTCCTACCGGATTAATTTGAAACTCTGAAAATTTCAAAATCTTAATATTCCGAATTTCACAAATTTTGAGTTTTTGGGAATTTCGAATATCTGATTATTTTGAAATTTTGAAATTCCAATCTTTGCAGAATCGGAACATTCTGAAGTGTCGAAACTCGCTATTTTCAATATCCCGAATTCCAAAAAAGCTTTTCCAAGAATCCTATATAAAAAGTTTCAAGATCAACTCGAAATATTTGCAGTTCGGATTCCTTACCACTATCACCATTCTCCTCCACGAGATTCCACACGAAATCAGTGATTTCGCTATCCTCCTCCGCGCCGATTTCGACCGAGTTGCTGCTATTAAGGCCCAGGTACGTCTACTAGTTCAAAAGCTCACCCACCAACCAYCAATTTTTTTCAGTTCGTAACTGCTTCCGCTGGAGTGTTGGGCTCATGTGTAGCACTTTCTCTTCACACCTCCAACGTGCCCGTCATTGAGACTCTCCTTCCGTTCACTGCTGGCGGTTTTCTGAATATTGCGCTGGTTCAGATTTTGCCAGAACTTCACGAAGAGAGATCTCCTATGTGAGTCTAACTTATAAAATTAAATGTTTTTTTTTTACTTTTATTTCAGTCAAAGTTTCAAGCAGTGGGCCATGATCGTGACTGGAGTCTTGTCAATGATGTGTCTCAACAATTTAAGCTTCTAAAAAATTCTGTTCTATATTTTTCTTTGTATTTTTTAAAAATCTCTTCGTGCCTTCCAAAAATGGTTAGTGAATATATCAGTGCCTTTTTCCATATAAAATACCGCTCGTCGTGCTTGCCAATAGTAATGTAAATCTGTTCCCTTTTTTTTTGTTCTGCCTTTTTGTAAACCTACCGGTCCTCTTTACCGGTCGACCAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>110 89 88 86 81 78 71 64 52 38 31 28 23 21 20 13 13 13 12 11 11 11 10 7 6 5 4 2 2</canonical_bands>
                <polymorphic_bands>110 89 88 86 81 78 71 64 52 45 31 28 23 21 20 13 13 13 12 11 11 11 10 6 5 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATATTTGCAGTTCGGATTC</pcr_primer_p1>
		<pcr_primer_p2>AGGTGTGAAGAGAAAGTGCTAC</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>AAATATTTGCAGTTCGGATTCCTTACCACTATCACCATTCTCCTCCACGAGATTCCACACGAAATCAGTGATTTCGCTATCCTCCTCCGCGCCGATTTCGACCGAGTTGCTGCTATTAAGGCCCAGGTACGTCTACTAGTTCAAAAGCTCACCCACCAACCACCAATTTTTTTCAGTTCGTAACTGCTTCCGCTGGAGTGTTGGGCTCATGTGTAGCACTTTCTCTTCACACCT</canonical_amplicon>
		<polymorphic_amplicon>AAATATTTGCAGTTCGGATTCCTTACCACTATCACCATTCTCCTCCACGAGATTCCACACGAAATCAGTGATTTCGCTATCCTCCTCCGCGCCGATTTCGACCGAGTTGCTGCTATTAAGGCCCAGGTACGTCTACTAGTTCAAAAGCTCACCCACCAACCAYCAATTTTTTTCAGTTCGTAACTGCTTCCGCTGGAGTGTTGGGCTCATGTGTAGCACTTTCTCTTCACACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14670</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>318898</contig_pos>
        <strand>+</strand>
        <context>TGGCGGTTTT[C/T]TGAATATTGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAACGTGCCCGTCATTGAGACTCTCCTTCCGTTCACTGCTGGCGGTTTT</left_flank>
        <right_flank>TGAATATTGCGCTGGTTCAGATTTTGCCAGAACTTCACGAAGAGAGATCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAAACTCTGAAAATTTCAAAATCTTAATATTCCGAATTTCACAAATTTTGAGTTTTTGGGAATTTCGAATATCTGATTATTTTGAAATTTTGAAATTCCAATCTTTGCAGAATCGGAACATTCTGAAGTGTCGAAACTCGCTATTTTCAATATCCCGAATTCCAAAAAAGCTTTTCCAAGAATCCTATATAAAAAGTTTCAAGATCAACTCGAAATATTTGCAGTTCGGATTCCTTACCACTATCACCATTCTCCTCCACGAGATTCCACACGAAATCAGTGATTTCGCTATCCTCCTCCGCGCCGATTTCGACCGAGTTGCTGCTATTAAGGCCCAGGTACGTCTACTAGTTCAAAAGCTCACCCACCAACCACCAATTTTTTTCAGTTCGTAACTGCTTCCGCTGGAGTGTTGGGCTCATGTGTAGCACTTTCTCTTCACACCTCCAACGTGCCCGTCATTGAGACTCTCCTTCCGTTCACTGCTGGCGGTTTTCTGAATATTGCGCTGGTTCAGATTTTGCCAGAACTTCACGAAGAGAGATCTCCTATGTGAGTCTAACTTATAAAATTAAATGTTTTTTTTTTACTTTTATTTCAGTCAAAGTTTCAAGCAGTGGGCCATGATCGTGACTGGAGTCTTGTCAATGATGTGTCTCAACAATTTAAGCTTCTAAAAAATTCTGTTCTATATTTTTCTTTGTATTTTTTAAAAATCTCTTCGTGCCTTCCAAAAATGGTTAGTGAATATATCAGTGCCTTTTTCCATATAAAATACCGCTCGTCGTGCTTGCCAATAGTAATGTAAATCTGTTCCCTTTTTTTTTGTTCTGCCTTTTTGTAAACCTACCGGTCCTCTTTACCGGTCGACCAACCGATTTTGTTTTTTTTTGTTCAACAATTTTTTTTTTCTTTTTCATAATGAAAAACCTCTGCATCATCGAAACATTTTCCATTTTTAATTTTATTTCATGTCAAATTAGAATTCCCAATGTTC</canonical>
            <polymorphic>TTTGAAACTCTGAAAATTTCAAAATCTTAATATTCCGAATTTCACAAATTTTGAGTTTTTGGGAATTTCGAATATCTGATTATTTTGAAATTTTGAAATTCCAATCTTTGCAGAATCGGAACATTCTGAAGTGTCGAAACTCGCTATTTTCAATATCCCGAATTCCAAAAAAGCTTTTCCAAGAATCCTATATAAAAAGTTTCAAGATCAACTCGAAATATTTGCAGTTCGGATTCCTTACCACTATCACCATTCTCCTCCACGAGATTCCACACGAAATCAGTGATTTCGCTATCCTCCTCCGCGCCGATTTCGACCGAGTTGCTGCTATTAAGGCCCAGGTACGTCTACTAGTTCAAAAGCTCACCCACCAACCACCAATTTTTTTCAGTTCGTAACTGCTTCCGCTGGAGTGTTGGGCTCATGTGTAGCACTTTCTCTTCACACCTCCAACGTGCCCGTCATTGAGACTCTCCTTCCGTTCACTGCTGGCGGTTTTYTGAATATTGCGCTGGTTCAGATTTTGCCAGAACTTCACGAAGAGAGATCTCCTATGTGAGTCTAACTTATAAAATTAAATGTTTTTTTTTTACTTTTATTTCAGTCAAAGTTTCAAGCAGTGGGCCATGATCGTGACTGGAGTCTTGTCAATGATGTGTCTCAACAATTTAAGCTTCTAAAAAATTCTGTTCTATATTTTTCTTTGTATTTTTTAAAAATCTCTTCGTGCCTTCCAAAAATGGTTAGTGAATATATCAGTGCCTTTTTCCATATAAAATACCGCTCGTCGTGCTTGCCAATAGTAATGTAAATCTGTTCCCTTTTTTTTTGTTCTGCCTTTTTGTAAACCTACCGGTCCTCTTTACCGGTCGACCAACCGATTTTGTTTTTTTTTGTTCAACAATTTTTTTTTTCTTTTTCATAATGAAAAACCTCTGCATCATCGAAACATTTTCCATTTTTAATTTTATTTCATGTCAAATTAGAATTCCCAATGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>481 270 104 41 41 25 18 11 9</canonical_bands>
                <polymorphic_bands>481 288 104 41 41 25 11 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCATGTGTAGCACTTTCTCTTC</pcr_primer_p1>
		<pcr_primer_p2>AAATTGTTGAGACACATCATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCATGTGTAGCACTTTCTCTTCACACCTCCAACGTGCCCGTCATTGAGACTCTCCTTCCGTTCACTGCTGGCGGTTTTCTGAATATTGCGCTGGTTCAGATTTTGCCAGAACTTCACGAAGAGAGATCTCCTATGTGAGTCTAACTTATAAAATTAAATGTTTTTTTTTTACTTTTATTTCAGTCAAAGTTTCAAGCAGTGGGCCATGATCGTGACTGGAGTCTTGTCAATGATGTGTCTCAACAATTT</canonical_amplicon>
		<polymorphic_amplicon>CTCATGTGTAGCACTTTCTCTTCACACCTCCAACGTGCCCGTCATTGAGACTCTCCTTCCGTTCACTGCTGGCGGTTTTYTGAATATTGCGCTGGTTCAGATTTTGCCAGAACTTCACGAAGAGAGATCTCCTATGTGAGTCTAACTTATAAAATTAAATGTTTTTTTTTTACTTTTATTTCAGTCAAAGTTTCAAGCAGTGGGCCATGATCGTGACTGGAGTCTTGTCAATGATGTGTCTCAACAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14703</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>319069</contig_pos>
        <strand>+</strand>
        <context>TCAACAATTT[A/G]AGCTTCTAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGGCCATGATCGTGACTGGAGTCTTGTCAATGATGTGTCTCAACAATTT</left_flank>
        <right_flank>AGCTTCTAAAAAATTCTGTTCTATATTTTTCTTTGTATTTTTTAAAAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTTTTCCAAGAATCCTATATAAAAAGTTTCAAGATCAACTCGAAATATTTGCAGTTCGGATTCCTTACCACTATCACCATTCTCCTCCACGAGATTCCACACGAAATCAGTGATTTCGCTATCCTCCTCCGCGCCGATTTCGACCGAGTTGCTGCTATTAAGGCCCAGGTACGTCTACTAGTTCAAAAGCTCACCCACCAACCACCAATTTTTTTCAGTTCGTAACTGCTTCCGCTGGAGTGTTGGGCTCATGTGTAGCACTTTCTCTTCACACCTCCAACGTGCCCGTCATTGAGACTCTCCTTCCGTTCACTGCTGGCGGTTTTCTGAATATTGCGCTGGTTCAGATTTTGCCAGAACTTCACGAAGAGAGATCTCCTATGTGAGTCTAACTTATAAAATTAAATGTTTTTTTTTTACTTTTATTTCAGTCAAAGTTTCAAGCAGTGGGCCATGATCGTGACTGGAGTCTTGTCAATGATGTGTCTCAACAATTTAAGCTTCTAAAAAATTCTGTTCTATATTTTTCTTTGTATTTTTTAAAAATCTCTTCGTGCCTTCCAAAAATGGTTAGTGAATATATCAGTGCCTTTTTCCATATAAAATACCGCTCGTCGTGCTTGCCAATAGTAATGTAAATCTGTTCCCTTTTTTTTTGTTCTGCCTTTTTGTAAACCTACCGGTCCTCTTTACCGGTCGACCAACCGATTTTGTTTTTTTTTGTTCAACAATTTTTTTTTTCTTTTTCATAATGAAAAACCTCTGCATCATCGAAACATTTTCCATTTTTAATTTTATTTCATGTCAAATTAGAATTCCCAATGTTCAAAGTCGAATATAAAAAAGGTGGAATCGCAAATCTCTTCGAGTTGCCTGTGGAGATGCTGACAGCTCTTGACGGGTGCCTAGAAACCACTTCACTACTGAAACATCGGCCCCCACGGACCACGCGCATTTTGAAAATTTCTTTGCATTAGTTATTTCGGTCCCCTTCCCGC</canonical>
            <polymorphic>AGCTTTTCCAAGAATCCTATATAAAAAGTTTCAAGATCAACTCGAAATATTTGCAGTTCGGATTCCTTACCACTATCACCATTCTCCTCCACGAGATTCCACACGAAATCAGTGATTTCGCTATCCTCCTCCGCGCCGATTTCGACCGAGTTGCTGCTATTAAGGCCCAGGTACGTCTACTAGTTCAAAAGCTCACCCACCAACCACCAATTTTTTTCAGTTCGTAACTGCTTCCGCTGGAGTGTTGGGCTCATGTGTAGCACTTTCTCTTCACACCTCCAACGTGCCCGTCATTGAGACTCTCCTTCCGTTCACTGCTGGCGGTTTTCTGAATATTGCGCTGGTTCAGATTTTGCCAGAACTTCACGAAGAGAGATCTCCTATGTGAGTCTAACTTATAAAATTAAATGTTTTTTTTTTACTTTTATTTCAGTCAAAGTTTCAAGCAGTGGGCCATGATCGTGACTGGAGTCTTGTCAATGATGTGTCTCAACAATTTRAGCTTCTAAAAAATTCTGTTCTATATTTTTCTTTGTATTTTTTAAAAATCTCTTCGTGCCTTCCAAAAATGGTTAGTGAATATATCAGTGCCTTTTTCCATATAAAATACCGCTCGTCGTGCTTGCCAATAGTAATGTAAATCTGTTCCCTTTTTTTTTGTTCTGCCTTTTTGTAAACCTACCGGTCCTCTTTACCGGTCGACCAACCGATTTTGTTTTTTTTTGTTCAACAATTTTTTTTTTCTTTTTCATAATGAAAAACCTCTGCATCATCGAAACATTTTCCATTTTTAATTTTATTTCATGTCAAATTAGAATTCCCAATGTTCAAAGTCGAATATAAAAAAGGTGGAATCGCAAATCTCTTCGAGTTGCCTGTGGAGATGCTGACAGCTCTTGACGGGTGCCTAGAAACCACTTCACTACTGAAACATCGGCCCCCACGGACCACGCGCATTTTGAAAATTTCTTTGCATTAGTTATTTCGGTCCCCTTCCCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>249 244 209 160 94 44</canonical_bands>
                <polymorphic_bands>249 244 209 160 138</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTCAAAGTTTCAAGCAGTG</pcr_primer_p1>
		<pcr_primer_p2>TAGGTTTACAAAAAGGCAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAGTCAAAGTTTCAAGCAGTGGGCCATGATCGTGACTGGAGTCTTGTCAATGATGTGTCTCAACAATTTAAGCTTCTAAAAAATTCTGTTCTATATTTTTCTTTGTATTTTTTAAAAATCTCTTCGTGCCTTCCAAAAATGGTTAGTGAATATATCAGTGCCTTTTTCCATATAAAATACCGCTCGTCGTGCTTGCCAATAGTAATGTAAATCTGTTCCCTTTTTTTTTGTTCTGCCTTTTTGTAAACCTA</canonical_amplicon>
		<polymorphic_amplicon>CAGTCAAAGTTTCAAGCAGTGGGCCATGATCGTGACTGGAGTCTTGTCAATGATGTGTCTCAACAATTTRAGCTTCTAAAAAATTCTGTTCTATATTTTTCTTTGTATTTTTTAAAAATCTCTTCGTGCCTTCCAAAAATGGTTAGTGAATATATCAGTGCCTTTTTCCATATAAAATACCGCTCGTCGTGCTTGCCAATAGTAATGTAAATCTGTTCCCTTTTTTTTTGTTCTGCCTTTTTGTAAACCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14704</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>319227</contig_pos>
        <strand>+</strand>
        <context>CCCWTTTTTT[G/T]TGTTCTGCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TACCGCTCGTCGTGCTTGCCAATAGTAATGTAAATCTGTTCCCTTTTTTT</left_flank>
        <right_flank>TGTTCTGCCTTTTTGTAAACCTACCGGTCCTCTTTACCGGTCGACCAACC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAAGGCCCAGGTACGTCTACTAGTTCAAAAGCTCACCCACCAACCACCAATTTTTTTCAGTTCGTAACTGCTTCCGCTGGAGTGTTGGGCTCATGTGTAGCACTTTCTCTTCACACCTCCAACGTGCCCGTCATTGAGACTCTCCTTCCGTTCACTGCTGGCGGTTTTCTGAATATTGCGCTGGTTCAGATTTTGCCAGAACTTCACGAAGAGAGATCTCCTATGTGAGTCTAACTTATAAAATTAAATGTTTTTTTTTTACTTTTATTTCAGTCAAAGTTTCAAGCAGTGGGCCATGATCGTGACTGGAGTCTTGTCAATGATGTGTCTCAACAATTTAAGCTTCTAAAAAATTCTGTTCTATATTTTTCTTTGTATTTTTTAAAAATCTCTTCGTGCCTTCCAAAAATGGTTAGTGAATATATCAGTGCCTTTTTCCATATAAAATACCGCTCGTCGTGCTTGCCAATAGTAATGTAAATCTGTTCCCTTTTTTTTTGTTCTGCCTTTTTGTAAACCTACCGGTCCTCTTTACCGGTCGACCAACCGATTTTGTTTTTTTTTGTTCAACAATTTTTTTTTTCTTTTTCATAATGAAAAACCTCTGCATCATCGAAACATTTTCCATTTTTAATTTTATTTCATGTCAAATTAGAATTCCCAATGTTCAAAGTCGAATATAAAAAAGGTGGAATCGCAAATCTCTTCGAGTTGCCTGTGGAGATGCTGACAGCTCTTGACGGGTGCCTAGAAACCACTTCACTACTGAAACATCGGCCCCCACGGACCACGCGCATTTTGAAAATTTCTTTGCATTAGTTATTTCGGTCCCCTTCCCGCTCCACCAACACTTTCTCTCTGTTTTTGTGTGTGTCAACAACATATGGTTGATGCTCCGAAAGCAGAGCTCATTGTTTTTGAATTTACAAATAGTATATCCATGTTCCTTTATATGGGGGAAACCAAAATGCTCTGTGTGAAGAGCCCGACCGAGAGCA</canonical>
            <polymorphic>ATTAAGGCCCAGGTACGTCTACTAGTTCAAAAGCTCACCCACCAACCACCAATTTTTTTCAGTTCGTAACTGCTTCCGCTGGAGTGTTGGGCTCATGTGTAGCACTTTCTCTTCACACCTCCAACGTGCCCGTCATTGAGACTCTCCTTCCGTTCACTGCTGGCGGTTTTCTGAATATTGCGCTGGTTCAGATTTTGCCAGAACTTCACGAAGAGAGATCTCCTATGTGAGTCTAACTTATAAAATTAAATGTTTTTTTTTTACTTTTATTTCAGTCAAAGTTTCAAGCAGTGGGCCATGATCGTGACTGGAGTCTTGTCAATGATGTGTCTCAACAATTTAAGCTTCTAAAAAATTCTGTTCTATATTTTTCTTTGTATTTTTTAAAAATCTCTTCGTGCCTTCCAAAAATGGTTAGTGAATATATCAGTGCCTTTTTCCATATAAAATACCGCTCGTCGTGCTTGCCAATAGTAATGTAAATCTGTTCCCTTTTTTTKTGTTCTGCCTTTTTGTAAACCTACCGGTCCTCTTTACCGGTCGACCAACCGATTTTGTTTTTTTTTGTTCAACAATTTTTTTTTTCTTTTTCATAATGAAAAACCTCTGCATCATCGAAACATTTTCCATTTTTAATTTTATTTCATGTCAAATTAGAATTCCCAATGTTCAAAGTCGAATATAAAAAAGGTGGAATCGCAAATCTCTTCGAGTTGCCTGTGGAGATGCTGACAGCTCTTGACGGGTGCCTAGAAACCACTTCACTACTGAAACATCGGCCCCCACGGACCACGCGCATTTTGAAAATTTCTTTGCATTAGTTATTTCGGTCCCCTTCCCGCTCCACCAACACTTTCTCTCTGTTTTTGTGTGTGTCAACAACATATGGTTGATGCTCCGAAAGCAGAGCTCATTGTTTTTGAATTTACAAATAGTATATCCATGTTCCTTTATATGGGGGAAACCAAAATGCTCTGTGTGAAGAGCCCGACCGAGAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGAATATATCAGTGCCTTTTTC</pcr_primer_p1>
		<pcr_primer_p2>GGGAATTCTAATTTGACATGAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTGAATATATCAGTGCCTTTTTCCATATAAAATACCGCTCGTCGTGCTTGCCAATAGTAATGTAAATCTGTTCCCTTTTTTTTTGTTCTGCCTTTTTGTAAACCTACCGGTCCTCTTTACCGGTCGACCAACCGATTTTGTTTTTTTTTGTTCAACAATTTTTTTTTTCTTTTTCATAATGAAAAACCTCTGCATCATCGAAACATTTTCCATTTTTAATTTTATTTCATGTCAAATTAGAATTCCC</canonical_amplicon>
		<polymorphic_amplicon>GTGAATATATCAGTGCCTTTTTCCATATAAAATACCGCTCGTCGTGCTTGCCAATAGTAATGTAAATCTGTTCCCTTTTTTTKTGTTCTGCCTTTTTGTAAACCTACCGGTCCTCTTTACCGGTCGACCAACCGATTTTGTTTTTTTTTGTTCAACAATTTTTTTTTTCTTTTTCATAATGAAAAACCTCTGCATCATCGAAACATTTTCCATTTTTAATTTTATTTCATGTCAAATTAGAATTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14705</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>319220</contig_pos>
        <strand>+</strand>
        <context>ATCTGTTCCC[A/T]TTTTTTKTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATAAAATACCGCTCGTCGTGCTTGCCAATAGTAATGTAAATCTGTTCCC</left_flank>
        <right_flank>TTTTTTTTGTTCTGCCTTTTTGTAAACCTACCGGTCCTCTTTACCGGTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTGCTATTAAGGCCCAGGTACGTCTACTAGTTCAAAAGCTCACCCACCAACCACCAATTTTTTTCAGTTCGTAACTGCTTCCGCTGGAGTGTTGGGCTCATGTGTAGCACTTTCTCTTCACACCTCCAACGTGCCCGTCATTGAGACTCTCCTTCCGTTCACTGCTGGCGGTTTTCTGAATATTGCGCTGGTTCAGATTTTGCCAGAACTTCACGAAGAGAGATCTCCTATGTGAGTCTAACTTATAAAATTAAATGTTTTTTTTTTACTTTTATTTCAGTCAAAGTTTCAAGCAGTGGGCCATGATCGTGACTGGAGTCTTGTCAATGATGTGTCTCAACAATTTAAGCTTCTAAAAAATTCTGTTCTATATTTTTCTTTGTATTTTTTAAAAATCTCTTCGTGCCTTCCAAAAATGGTTAGTGAATATATCAGTGCCTTTTTCCATATAAAATACCGCTCGTCGTGCTTGCCAATAGTAATGTAAATCTGTTCCCTTTTTTTTTGTTCTGCCTTTTTGTAAACCTACCGGTCCTCTTTACCGGTCGACCAACCGATTTTGTTTTTTTTTGTTCAACAATTTTTTTTTTCTTTTTCATAATGAAAAACCTCTGCATCATCGAAACATTTTCCATTTTTAATTTTATTTCATGTCAAATTAGAATTCCCAATGTTCAAAGTCGAATATAAAAAAGGTGGAATCGCAAATCTCTTCGAGTTGCCTGTGGAGATGCTGACAGCTCTTGACGGGTGCCTAGAAACCACTTCACTACTGAAACATCGGCCCCCACGGACCACGCGCATTTTGAAAATTTCTTTGCATTAGTTATTTCGGTCCCCTTCCCGCTCCACCAACACTTTCTCTCTGTTTTTGTGTGTGTCAACAACATATGGTTGATGCTCCGAAAGCAGAGCTCATTGTTTTTGAATTTACAAATAGTATATCCATGTTCCTTTATATGGGGGAAACCAAAATGCTCTGTGTGAAGAGCCCGACC</canonical>
            <polymorphic>TGCTGCTATTAAGGCCCAGGTACGTCTACTAGTTCAAAAGCTCACCCACCAACCACCAATTTTTTTCAGTTCGTAACTGCTTCCGCTGGAGTGTTGGGCTCATGTGTAGCACTTTCTCTTCACACCTCCAACGTGCCCGTCATTGAGACTCTCCTTCCGTTCACTGCTGGCGGTTTTCTGAATATTGCGCTGGTTCAGATTTTGCCAGAACTTCACGAAGAGAGATCTCCTATGTGAGTCTAACTTATAAAATTAAATGTTTTTTTTTTACTTTTATTTCAGTCAAAGTTTCAAGCAGTGGGCCATGATCGTGACTGGAGTCTTGTCAATGATGTGTCTCAACAATTTAAGCTTCTAAAAAATTCTGTTCTATATTTTTCTTTGTATTTTTTAAAAATCTCTTCGTGCCTTCCAAAAATGGTTAGTGAATATATCAGTGCCTTTTTCCATATAAAATACCGCTCGTCGTGCTTGCCAATAGTAATGTAAATCTGTTCCCWTTTTTTTTGTTCTGCCTTTTTGTAAACCTACCGGTCCTCTTTACCGGTCGACCAACCGATTTTGTTTTTTTTTGTTCAACAATTTTTTTTTTCTTTTTCATAATGAAAAACCTCTGCATCATCGAAACATTTTCCATTTTTAATTTTATTTCATGTCAAATTAGAATTCCCAATGTTCAAAGTCGAATATAAAAAAGGTGGAATCGCAAATCTCTTCGAGTTGCCTGTGGAGATGCTGACAGCTCTTGACGGGTGCCTAGAAACCACTTCACTACTGAAACATCGGCCCCCACGGACCACGCGCATTTTGAAAATTTCTTTGCATTAGTTATTTCGGTCCCCTTCCCGCTCCACCAACACTTTCTCTCTGTTTTTGTGTGTGTCAACAACATATGGTTGATGCTCCGAAAGCAGAGCTCATTGTTTTTGAATTTACAAATAGTATATCCATGTTCCTTTATATGGGGGAAACCAAAATGCTCTGTGTGAAGAGCCCGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGAATATATCAGTGCCTTTTTC</pcr_primer_p1>
		<pcr_primer_p2>GGGAATTCTAATTTGACATGAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTGAATATATCAGTGCCTTTTTCCATATAAAATACCGCTCGTCGTGCTTGCCAATAGTAATGTAAATCTGTTCCCTTTTTTTTTGTTCTGCCTTTTTGTAAACCTACCGGTCCTCTTTACCGGTCGACCAACCGATTTTGTTTTTTTTTGTTCAACAATTTTTTTTTTCTTTTTCATAATGAAAAACCTCTGCATCATCGAAACATTTTCCATTTTTAATTTTATTTCATGTCAAATTAGAATTCCC</canonical_amplicon>
		<polymorphic_amplicon>GTGAATATATCAGTGCCTTTTTCCATATAAAATACCGCTCGTCGTGCTTGCCAATAGTAATGTAAATCTGTTCCCWTTTTTTTTGTTCTGCCTTTTTGTAAACCTACCGGTCCTCTTTACCGGTCGACCAACCGATTTTGTTTTTTTTTGTTCAACAATTTTTTTTTTCTTTTTCATAATGAAAAACCTCTGCATCATCGAAACATTTTCCATTTTTAATTTTATTTCATGTCAAATTAGAATTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14706</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>319173</contig_pos>
        <strand>+</strand>
        <context>TTTTCCATAT[A/G]AAATACCGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGTGCCTTCCAAAAATGGTTAGTGAATATATCAGTGCCTTTTTCCATAT</left_flank>
        <right_flank>AAATACCGCTCGTCGTGCTTGCCAATAGTAATGTAAATCTGTTCCCTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATCAGTGATTTCGCTATCCTCCTCCGCGCCGATTTCGACCGAGTTGCTGCTATTAAGGCCCAGGTACGTCTACTAGTTCAAAAGCTCACCCACCAACCACCAATTTTTTTCAGTTCGTAACTGCTTCCGCTGGAGTGTTGGGCTCATGTGTAGCACTTTCTCTTCACACCTCCAACGTGCCCGTCATTGAGACTCTCCTTCCGTTCACTGCTGGCGGTTTTCTGAATATTGCGCTGGTTCAGATTTTGCCAGAACTTCACGAAGAGAGATCTCCTATGTGAGTCTAACTTATAAAATTAAATGTTTTTTTTTTACTTTTATTTCAGTCAAAGTTTCAAGCAGTGGGCCATGATCGTGACTGGAGTCTTGTCAATGATGTGTCTCAACAATTTAAGCTTCTAAAAAATTCTGTTCTATATTTTTCTTTGTATTTTTTAAAAATCTCTTCGTGCCTTCCAAAAATGGTTAGTGAATATATCAGTGCCTTTTTCCATATAAAATACCGCTCGTCGTGCTTGCCAATAGTAATGTAAATCTGTTCCCTTTTTTTTTGTTCTGCCTTTTTGTAAACCTACCGGTCCTCTTTACCGGTCGACCAACCGATTTTGTTTTTTTTTGTTCAACAATTTTTTTTTTCTTTTTCATAATGAAAAACCTCTGCATCATCGAAACATTTTCCATTTTTAATTTTATTTCATGTCAAATTAGAATTCCCAATGTTCAAAGTCGAATATAAAAAAGGTGGAATCGCAAATCTCTTCGAGTTGCCTGTGGAGATGCTGACAGCTCTTGACGGGTGCCTAGAAACCACTTCACTACTGAAACATCGGCCCCCACGGACCACGCGCATTTTGAAAATTTCTTTGCATTAGTTATTTCGGTCCCCTTCCCGCTCCACCAACACTTTCTCTCTGTTTTTGTGTGTGTCAACAACATATGGTTGATGCTCCGAAAGCAGAGCTCATTGTTTTTGAATTTACAAATAGTATATCCATGT</canonical>
            <polymorphic>GAAATCAGTGATTTCGCTATCCTCCTCCGCGCCGATTTCGACCGAGTTGCTGCTATTAAGGCCCAGGTACGTCTACTAGTTCAAAAGCTCACCCACCAACCACCAATTTTTTTCAGTTCGTAACTGCTTCCGCTGGAGTGTTGGGCTCATGTGTAGCACTTTCTCTTCACACCTCCAACGTGCCCGTCATTGAGACTCTCCTTCCGTTCACTGCTGGCGGTTTTCTGAATATTGCGCTGGTTCAGATTTTGCCAGAACTTCACGAAGAGAGATCTCCTATGTGAGTCTAACTTATAAAATTAAATGTTTTTTTTTTACTTTTATTTCAGTCAAAGTTTCAAGCAGTGGGCCATGATCGTGACTGGAGTCTTGTCAATGATGTGTCTCAACAATTTAAGCTTCTAAAAAATTCTGTTCTATATTTTTCTTTGTATTTTTTAAAAATCTCTTCGTGCCTTCCAAAAATGGTTAGTGAATATATCAGTGCCTTTTTCCATATRAAATACCGCTCGTCGTGCTTGCCAATAGTAATGTAAATCTGTTCCCTTTTTTTTTGTTCTGCCTTTTTGTAAACCTACCGGTCCTCTTTACCGGTCGACCAACCGATTTTGTTTTTTTTTGTTCAACAATTTTTTTTTTCTTTTTCATAATGAAAAACCTCTGCATCATCGAAACATTTTCCATTTTTAATTTTATTTCATGTCAAATTAGAATTCCCAATGTTCAAAGTCGAATATAAAAAAGGTGGAATCGCAAATCTCTTCGAGTTGCCTGTGGAGATGCTGACAGCTCTTGACGGGTGCCTAGAAACCACTTCACTACTGAAACATCGGCCCCCACGGACCACGCGCATTTTGAAAATTTCTTTGCATTAGTTATTTCGGTCCCCTTCCCGCTCCACCAACACTTTCTCTCTGTTTTTGTGTGTGTCAACAACATATGGTTGATGCTCCGAAAGCAGAGCTCATTGTTTTTGAATTTACAAATAGTATATCCATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTCAAAGTTTCAAGCAGTG</pcr_primer_p1>
		<pcr_primer_p2>TAGGTTTACAAAAAGGCAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAGTCAAAGTTTCAAGCAGTGGGCCATGATCGTGACTGGAGTCTTGTCAATGATGTGTCTCAACAATTTAAGCTTCTAAAAAATTCTGTTCTATATTTTTCTTTGTATTTTTTAAAAATCTCTTCGTGCCTTCCAAAAATGGTTAGTGAATATATCAGTGCCTTTTTCCATATAAAATACCGCTCGTCGTGCTTGCCAATAGTAATGTAAATCTGTTCCCTTTTTTTTTGTTCTGCCTTTTTGTAAACCTA</canonical_amplicon>
		<polymorphic_amplicon>CAGTCAAAGTTTCAAGCAGTGGGCCATGATCGTGACTGGAGTCTTGTCAATGATGTGTCTCAACAATTTAAGCTTCTAAAAAATTCTGTTCTATATTTTTCTTTGTATTTTTTAAAAATCTCTTCGTGCCTTCCAAAAATGGTTAGTGAATATATCAGTGCCTTTTTCCATATRAAATACCGCTCGTCGTGCTTGCCAATAGTAATGTAAATCTGTTCCCTTTTTTTTTGTTCTGCCTTTTTGTAAACCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14707</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>320484</contig_pos>
        <strand>+</strand>
        <context>TTATTTCAAA[C/T]ATTTTTATAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGTGAAACGTTTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAA</left_flank>
        <right_flank>ATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGAATATATAT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGAATATATATTCTTAGATATAAAATAGAATAACTAAATTAGTAGAAATTACGAGTACAGCGCCGGAAAACGGCTAAAATATTTTTTAGTGACACTTCCAAGACCTGAGAAAATATTTTAGAAGTTATATTTTTCTGAAAGTTTCAAATCTTATTGAGCCTAAAAATATATTAGCTTTTTTAATAATTTTATTTGAATAGTCATGTCAAATATTGAAATAACTACTTTTTTGGAATTTACAATTTTTAACCGAATTCCATTCTGGTGAGATATGACGTTTGCATTTAAAAATGTGCTAAAAATGAGAAAGCTAGAACTAAACTTAAAGTTTGGCCACTTCTCAACTGCTTATCTCGTTTGCTTAAATTCGTTGTCAATCACAAAATTAAAGCTGACCATTTGTTCAGTATACGCAGAAAATTTCCGACAAATCGAAAAATTCTGTAATACTTTTTAGTACA</canonical>
            <polymorphic>ATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAAYATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGAATATATATTCTTAGATATAAAATAGAATAACTAAATTAGTAGAAATTACGAGTACAGCGCCGGAAAACGGCTAAAATATTTTTTAGTGACACTTCCAAGACCTGAGAAAATATTTTAGAAGTTATATTTTTCTGAAAGTTTCAAATCTTATTGAGCCTAAAAATATATTAGCTTTTTTAATAATTTTATTTGAATAGTCATGTCAAATATTGAAATAACTACTTTTTTGGAATTTACAATTTTTAACCGAATTCCATTCTGGTGAGATATGACGTTTGCATTTAAAAATGTGCTAAAAATGAGAAAGCTAGAACTAAACTTAAAGTTTGGCCACTTCTCAACTGCTTATCTCGTTTGCTTAAATTCGTTGTCAATCACAAAATTAAAGCTGACCATTTGTTCAGTATACGCAGAAAATTTCCGACAAATCGAAAAATTCTGTAATACTTTTTAGTACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 250 119 97 34</canonical_bands>
                <polymorphic_bands>619 250 97 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATTGTTTTCATATGTTATCG</pcr_primer_p1>
		<pcr_primer_p2>GCGCTGTACTCGTAATTTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGAATATATATTCTTAGATATAAAATAGAATAACTAAATTAGTAGAAATTACGAGTACAGCGC</canonical_amplicon>
		<polymorphic_amplicon>CCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAAYATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGAATATATATTCTTAGATATAAAATAGAATAACTAAATTAGTAGAAATTACGAGTACAGCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14708</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>320461</contig_pos>
        <strand>+</strand>
        <context>GTTCATTTTC[C/T]AATATGTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTC</left_flank>
        <right_flank>AATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTCTTGTTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGAATATATATTCTTAGATATAAAATAGAATAACTAAATTAGTAGAAATTACGAGTACAGCGCCGGAAAACGGCTAAAATATTTTTTAGTGACACTTCCAAGACCTGAGAAAATATTTTAGAAGTTATATTTTTCTGAAAGTTTCAAATCTTATTGAGCCTAAAAATATATTAGCTTTTTTAATAATTTTATTTGAATAGTCATGTCAAATATTGAAATAACTACTTTTTTGGAATTTACAATTTTTAACCGAATTCCATTCTGGTGAGATATGACGTTTGCATTTAAAAATGTGCTAAAAATGAGAAAGCTAGAACTAAACTTAAAGTTTGGCCACTTCTCAACTGCTTATCTCGTTTGCTTAAATTCGTTGTCAATCACAAAATTAAAGCTGACCATTTGTTCAGTATACGCAGAAAATTTCCGACAAATCGAAAA</canonical>
            <polymorphic>TTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCYAATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGAATATATATTCTTAGATATAAAATAGAATAACTAAATTAGTAGAAATTACGAGTACAGCGCCGGAAAACGGCTAAAATATTTTTTAGTGACACTTCCAAGACCTGAGAAAATATTTTAGAAGTTATATTTTTCTGAAAGTTTCAAATCTTATTGAGCCTAAAAATATATTAGCTTTTTTAATAATTTTATTTGAATAGTCATGTCAAATATTGAAATAACTACTTTTTTGGAATTTACAATTTTTAACCGAATTCCATTCTGGTGAGATATGACGTTTGCATTTAAAAATGTGCTAAAAATGAGAAAGCTAGAACTAAACTTAAAGTTTGGCCACTTCTCAACTGCTTATCTCGTTTGCTTAAATTCGTTGTCAATCACAAAATTAAAGCTGACCATTTGTTCAGTATACGCAGAAAATTTCCGACAAATCGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATTGTTTTCATATGTTATCG</pcr_primer_p1>
		<pcr_primer_p2>GCGCTGTACTCGTAATTTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGAATATATATTCTTAGATATAAAATAGAATAACTAAATTAGTAGAAATTACGAGTACAGCGC</canonical_amplicon>
		<polymorphic_amplicon>CCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCYAATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGAATATATATTCTTAGATATAAAATAGAATAACTAAATTAGTAGAAATTACGAGTACAGCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14709</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>320445</contig_pos>
        <strand>+</strand>
        <context>AGTGAAACGT[C/T]TTTTTGTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGT</left_flank>
        <right_flank>TTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAATATTTTTATAGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGAATATATATTCTTAGATATAAAATAGAATAACTAAATTAGTAGAAATTACGAGTACAGCGCCGGAAAACGGCTAAAATATTTTTTAGTGACACTTCCAAGACCTGAGAAAATATTTTAGAAGTTATATTTTTCTGAAAGTTTCAAATCTTATTGAGCCTAAAAATATATTAGCTTTTTTAATAATTTTATTTGAATAGTCATGTCAAATATTGAAATAACTACTTTTTTGGAATTTACAATTTTTAACCGAATTCCATTCTGGTGAGATATGACGTTTGCATTTAAAAATGTGCTAAAAATGAGAAAGCTAGAACTAAACTTAAAGTTTGGCCACTTCTCAACTGCTTATCTCGTTTGCTTAAATTCGTTGTCAATCACAAAATTAAAGCTGACCATTTGTTCAGTATACGCAGAAAATT</canonical>
            <polymorphic>GCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTYTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGAATATATATTCTTAGATATAAAATAGAATAACTAAATTAGTAGAAATTACGAGTACAGCGCCGGAAAACGGCTAAAATATTTTTTAGTGACACTTCCAAGACCTGAGAAAATATTTTAGAAGTTATATTTTTCTGAAAGTTTCAAATCTTATTGAGCCTAAAAATATATTAGCTTTTTTAATAATTTTATTTGAATAGTCATGTCAAATATTGAAATAACTACTTTTTTGGAATTTACAATTTTTAACCGAATTCCATTCTGGTGAGATATGACGTTTGCATTTAAAAATGTGCTAAAAATGAGAAAGCTAGAACTAAACTTAAAGTTTGGCCACTTCTCAACTGCTTATCTCGTTTGCTTAAATTCGTTGTCAATCACAAAATTAAAGCTGACCATTTGTTCAGTATACGCAGAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATTGTTTTCATATGTTATCG</pcr_primer_p1>
		<pcr_primer_p2>GCGCTGTACTCGTAATTTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGAATATATATTCTTAGATATAAAATAGAATAACTAAATTAGTAGAAATTACGAGTACAGCGC</canonical_amplicon>
		<polymorphic_amplicon>CCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTYTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGAATATATATTCTTAGATATAAAATAGAATAACTAAATTAGTAGAAATTACGAGTACAGCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14710</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>320288</contig_pos>
        <strand>+</strand>
        <context>AGTTGAGTAT[A/G]ACACCGAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTAT</left_flank>
        <right_flank>ACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGTCTGAATATGTCGACCTCCGTTACTAATCTTTCATTGTGCTCCGTCTTGTGTCCCGCCAGCTGCACAATTCACCTCGAAATGGTTGTGTACTAAGGACCACAGAAGATTTTATTGCTGAAATACTGGGTTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGAATATATATTCTTAGATATAAAATAGAATAACTAAATTAGTAGAAATTACGAGTACAGCGCCGGAAAACGGCTAAAATATTTTTTAGTGACACTTCCAAGACCTGAGAAAATATTTTAGAAGTTATATTTTTCTGAAAGTTTCAAATCTTATTGAGCCTAAAAATATATTAGCTTTTTTAATAATTTTATTTGAATAGTCATGTCAAATATTGAAATAACTACTTTTTTGGAATTTACAATTTTTAACCGAATTCCATTCTGG</canonical>
            <polymorphic>AAGGTCTGAATATGTCGACCTCCGTTACTAATCTTTCATTGTGCTCCGTCTTGTGTCCCGCCAGCTGCACAATTCACCTCGAAATGGTTGTGTACTAAGGACCACAGAAGATTTTATTGCTGAAATACTGGGTTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATRACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGAATATATATTCTTAGATATAAAATAGAATAACTAAATTAGTAGAAATTACGAGTACAGCGCCGGAAAACGGCTAAAATATTTTTTAGTGACACTTCCAAGACCTGAGAAAATATTTTAGAAGTTATATTTTTCTGAAAGTTTCAAATCTTATTGAGCCTAAAAATATATTAGCTTTTTTAATAATTTTATTTGAATAGTCATGTCAAATATTGAAATAACTACTTTTTTGGAATTTACAATTTTTAACCGAATTCCATTCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTCAAAACACTTCACTTCTC</pcr_primer_p1>
		<pcr_primer_p2>AAATGAATGTCTAGGAAATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTT</canonical_amplicon>
		<polymorphic_amplicon>ATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATRACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14711</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>320275</contig_pos>
        <strand>+</strand>
        <context>TTAACTTTCC[A/G]GTAGTTGAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCC</left_flank>
        <right_flank>GTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGACGAGAAAAGAAAGGTCTGAATATGTCGACCTCCGTTACTAATCTTTCATTGTGCTCCGTCTTGTGTCCCGCCAGCTGCACAATTCACCTCGAAATGGTTGTGTACTAAGGACCACAGAAGATTTTATTGCTGAAATACTGGGTTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGAATATATATTCTTAGATATAAAATAGAATAACTAAATTAGTAGAAATTACGAGTACAGCGCCGGAAAACGGCTAAAATATTTTTTAGTGACACTTCCAAGACCTGAGAAAATATTTTAGAAGTTATATTTTTCTGAAAGTTTCAAATCTTATTGAGCCTAAAAATATATTAGCTTTTTTAATAATTTTATTTGAATAGTCATGTCAAATATTGAAATAACTACTTTTTTGGAATTTACAATTTTTAACCG</canonical>
            <polymorphic>GGACGAGAAAAGAAAGGTCTGAATATGTCGACCTCCGTTACTAATCTTTCATTGTGCTCCGTCTTGTGTCCCGCCAGCTGCACAATTCACCTCGAAATGGTTGTGTACTAAGGACCACAGAAGATTTTATTGCTGAAATACTGGGTTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCRGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGAATATATATTCTTAGATATAAAATAGAATAACTAAATTAGTAGAAATTACGAGTACAGCGCCGGAAAACGGCTAAAATATTTTTTAGTGACACTTCCAAGACCTGAGAAAATATTTTAGAAGTTATATTTTTCTGAAAGTTTCAAATCTTATTGAGCCTAAAAATATATTAGCTTTTTTAATAATTTTATTTGAATAGTCATGTCAAATATTGAAATAACTACTTTTTTGGAATTTACAATTTTTAACCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>498 313 189</canonical_bands>
                <polymorphic_bands>811 189</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTCAAAACACTTCACTTCTC</pcr_primer_p1>
		<pcr_primer_p2>AAATGAATGTCTAGGAAATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTT</canonical_amplicon>
		<polymorphic_amplicon>ATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCRGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14712</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>320264</contig_pos>
        <strand>+</strand>
        <context>AACTACTATT[C/G]TTAACTTTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATT</left_flank>
        <right_flank>TTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACGTATAAGAGGACGAGAAAAGAAAGGTCTGAATATGTCGACCTCCGTTACTAATCTTTCATTGTGCTCCGTCTTGTGTCCCGCCAGCTGCACAATTCACCTCGAAATGGTTGTGTACTAAGGACCACAGAAGATTTTATTGCTGAAATACTGGGTTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGAATATATATTCTTAGATATAAAATAGAATAACTAAATTAGTAGAAATTACGAGTACAGCGCCGGAAAACGGCTAAAATATTTTTTAGTGACACTTCCAAGACCTGAGAAAATATTTTAGAAGTTATATTTTTCTGAAAGTTTCAAATCTTATTGAGCCTAAAAATATATTAGCTTTTTTAATAATTTTATTTGAATAGTCATGTCAAATATTGAAATAACTACTTTTTTGGAATTTACA</canonical>
            <polymorphic>AACGTATAAGAGGACGAGAAAAGAAAGGTCTGAATATGTCGACCTCCGTTACTAATCTTTCATTGTGCTCCGTCTTGTGTCCCGCCAGCTGCACAATTCACCTCGAAATGGTTGTGTACTAAGGACCACAGAAGATTTTATTGCTGAAATACTGGGTTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTSTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGAATATATATTCTTAGATATAAAATAGAATAACTAAATTAGTAGAAATTACGAGTACAGCGCCGGAAAACGGCTAAAATATTTTTTAGTGACACTTCCAAGACCTGAGAAAATATTTTAGAAGTTATATTTTTCTGAAAGTTTCAAATCTTATTGAGCCTAAAAATATATTAGCTTTTTTAATAATTTTATTTGAATAGTCATGTCAAATATTGAAATAACTACTTTTTTGGAATTTACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTTAAC</site>
                <isoschizomers>
                    <enzyme>BstHPI</enzyme>
                    <enzyme>HpaI</enzyme>
                    <enzyme>KspAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>498 462 40</canonical_bands>
                <polymorphic_bands>960 40</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 253 78 76 55 40</canonical_bands>
                <polymorphic_bands>576 253 76 55 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTCAAAACACTTCACTTCTC</pcr_primer_p1>
		<pcr_primer_p2>AAATGAATGTCTAGGAAATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTT</canonical_amplicon>
		<polymorphic_amplicon>ATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTSTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14713</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>320200</contig_pos>
        <strand>+</strand>
        <context>ACTGWTGCAG[A/G]ATTTACTATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAG</left_flank>
        <right_flank>ATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGTGTGAAGAGCCCGACCGAGAGCATTTTGCGGGCATTTTGTGGTAAACAAGTGGGAAATGAAACGTATAAGAGGACGAGAAAAGAAAGGTCTGAATATGTCGACCTCCGTTACTAATCTTTCATTGTGCTCCGTCTTGTGTCCCGCCAGCTGCACAATTCACCTCGAAATGGTTGTGTACTAAGGACCACAGAAGATTTTATTGCTGAAATACTGGGTTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGAATATATATTCTTAGATATAAAATAGAATAACTAAATTAGTAGAAATTACGAGTACAGCGCCGGAAAACGGCTAAAATATTTTTTAGTGACACTTCCAAGACCTGAGAAAATATTTTAGAAGTTATATTTTTCTGAAAGTTTCAAATCTTATTGAGCCTAAAAATATATTAGCTT</canonical>
            <polymorphic>TCTGTGTGAAGAGCCCGACCGAGAGCATTTTGCGGGCATTTTGTGGTAAACAAGTGGGAAATGAAACGTATAAGAGGACGAGAAAAGAAAGGTCTGAATATGTCGACCTCCGTTACTAATCTTTCATTGTGCTCCGTCTTGTGTCCCGCCAGCTGCACAATTCACCTCGAAATGGTTGTGTACTAAGGACCACAGAAGATTTTATTGCTGAAATACTGGGTTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGRATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGAATATATATTCTTAGATATAAAATAGAATAACTAAATTAGTAGAAATTACGAGTACAGCGCCGGAAAACGGCTAAAATATTTTTTAGTGACACTTCCAAGACCTGAGAAAATATTTTAGAAGTTATATTTTTCTGAAAGTTTCAAATCTTATTGAGCCTAAAAATATATTAGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTCAAAACACTTCACTTCTC</pcr_primer_p1>
		<pcr_primer_p2>AAATGAATGTCTAGGAAATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTT</canonical_amplicon>
		<polymorphic_amplicon>ATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGRATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14714</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>320194</contig_pos>
        <strand>+</strand>
        <context>AAGTTCACTG[A/T]TGCAGRATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTG</left_flank>
        <right_flank>TGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATGCTCTGTGTGAAGAGCCCGACCGAGAGCATTTTGCGGGCATTTTGTGGTAAACAAGTGGGAAATGAAACGTATAAGAGGACGAGAAAAGAAAGGTCTGAATATGTCGACCTCCGTTACTAATCTTTCATTGTGCTCCGTCTTGTGTCCCGCCAGCTGCACAATTCACCTCGAAATGGTTGTGTACTAAGGACCACAGAAGATTTTATTGCTGAAATACTGGGTTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGAATATATATTCTTAGATATAAAATAGAATAACTAAATTAGTAGAAATTACGAGTACAGCGCCGGAAAACGGCTAAAATATTTTTTAGTGACACTTCCAAGACCTGAGAAAATATTTTAGAAGTTATATTTTTCTGAAAGTTTCAAATCTTATTGAGCCTAAAAATATAT</canonical>
            <polymorphic>AAATGCTCTGTGTGAAGAGCCCGACCGAGAGCATTTTGCGGGCATTTTGTGGTAAACAAGTGGGAAATGAAACGTATAAGAGGACGAGAAAAGAAAGGTCTGAATATGTCGACCTCCGTTACTAATCTTTCATTGTGCTCCGTCTTGTGTCCCGCCAGCTGCACAATTCACCTCGAAATGGTTGTGTACTAAGGACCACAGAAGATTTTATTGCTGAAATACTGGGTTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGWTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGAATATATATTCTTAGATATAAAATAGAATAACTAAATTAGTAGAAATTACGAGTACAGCGCCGGAAAACGGCTAAAATATTTTTTAGTGACACTTCCAAGACCTGAGAAAATATTTTAGAAGTTATATTTTTCTGAAAGTTTCAAATCTTATTGAGCCTAAAAATATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATTCTCAAAACACTTCACTTCT</pcr_primer_p1>
		<pcr_primer_p2>AATGAATGTCTAGGAAATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATT</canonical_amplicon>
		<polymorphic_amplicon>TAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGWTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14715</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>320171</contig_pos>
        <strand>+</strand>
        <context>TTCTCAACAA[A/T]TTATTTATCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAA</left_flank>
        <right_flank>TTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCCTTTATATGGGGGAAACCAAAATGCTCTGTGTGAAGAGCCCGACCGAGAGCATTTTGCGGGCATTTTGTGGTAAACAAGTGGGAAATGAAACGTATAAGAGGACGAGAAAAGAAAGGTCTGAATATGTCGACCTCCGTTACTAATCTTTCATTGTGCTCCGTCTTGTGTCCCGCCAGCTGCACAATTCACCTCGAAATGGTTGTGTACTAAGGACCACAGAAGATTTTATTGCTGAAATACTGGGTTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGAATATATATTCTTAGATATAAAATAGAATAACTAAATTAGTAGAAATTACGAGTACAGCGCCGGAAAACGGCTAAAATATTTTTTAGTGACACTTCCAAGACCTGAGAAAATATTTTAGAAGTTATATTTTTCTGAAAGTTTCAAA</canonical>
            <polymorphic>GTTCCTTTATATGGGGGAAACCAAAATGCTCTGTGTGAAGAGCCCGACCGAGAGCATTTTGCGGGCATTTTGTGGTAAACAAGTGGGAAATGAAACGTATAAGAGGACGAGAAAAGAAAGGTCTGAATATGTCGACCTCCGTTACTAATCTTTCATTGTGCTCCGTCTTGTGTCCCGCCAGCTGCACAATTCACCTCGAAATGGTTGTGTACTAAGGACCACAGAAGATTTTATTGCTGAAATACTGGGTTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAAWTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGAATATATATTCTTAGATATAAAATAGAATAACTAAATTAGTAGAAATTACGAGTACAGCGCCGGAAAACGGCTAAAATATTTTTTAGTGACACTTCCAAGACCTGAGAAAATATTTTAGAAGTTATATTTTTCTGAAAGTTTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>203 187 153 105 102 87 66 27 25 22 13 10</canonical_bands>
                <polymorphic_bands>230 187 153 105 102 87 66 25 22 13 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGATAGAAAACCTCTCACC</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCACTATTAGTTCTCGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>GGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAAWTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14716</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>320121</contig_pos>
        <strand></strand>
        <context>TATTTGAATT[G/A]AACCTTCTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATT</left_flank>
        <right_flank>AACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCCGAAAGCAGAGCTCATTGTTTTTGAATTTACAAATAGTATATCCATGTTCCTTTATATGGGGGAAACCAAAATGCTCTGTGTGAAGAGCCCGACCGAGAGCATTTTGCGGGCATTTTGTGGTAAACAAGTGGGAAATGAAACGTATAAGAGGACGAGAAAAGAAAGGTCTGAATATGTCGACCTCCGTTACTAATCTTTCATTGTGCTCCGTCTTGTGTCCCGCCAGCTGCACAATTCACCTCGAAATGGTTGTGTACTAAGGACCACAGAAGATTTTATTGCTGAAATACTGGGTTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGAATATATATTCTTAGATATAAAATAGAATAACTAAATTAGTAGAAATTACGAGTACAGCGCCGGAAAACGGCTAAAATATTTTTTAGTGACACTTC</canonical>
            <polymorphic>GCTCCGAAAGCAGAGCTCATTGTTTTTGAATTTACAAATAGTATATCCATGTTCCTTTATATGGGGGAAACCAAAATGCTCTGTGTGAAGAGCCCGACCGAGAGCATTTTGCGGGCATTTTGTGGTAAACAAGTGGGAAATGAAACGTATAAGAGGACGAGAAAAGAAAGGTCTGAATATGTCGACCTCCGTTACTAATCTTTCATTGTGCTCCGTCTTGTGTCCCGCCAGCTGCACAATTCACCTCGAAATGGTTGTGTACTAAGGACCACAGAAGATTTTATTGCTGAAATACTGGGTTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTRAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGAATATATATTCTTAGATATAAAATAGAATAACTAAATTAGTAGAAATTACGAGTACAGCGCCGGAAAACGGCTAAAATATTTTTTAGTGACACTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGATAGAAAACCTCTCACC</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCACTATTAGTTCTCGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>GGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTRAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14717</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>320026</contig_pos>
        <strand>+</strand>
        <context>TAAAAATGTT[G/T]GTTTTTCTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTT</left_flank>
        <right_flank>GTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAAAATTTCTTTGCATTAGTTATTTCGGTCCCCTTCCCGCTCCACCAACACTTTCTCTCTGTTTTTGTGTGTGTCAACAACATATGGTTGATGCTCCGAAAGCAGAGCTCATTGTTTTTGAATTTACAAATAGTATATCCATGTTCCTTTATATGGGGGAAACCAAAATGCTCTGTGTGAAGAGCCCGACCGAGAGCATTTTGCGGGCATTTTGTGGTAAACAAGTGGGAAATGAAACGTATAAGAGGACGAGAAAAGAAAGGTCTGAATATGTCGACCTCCGTTACTAATCTTTCATTGTGCTCCGTCTTGTGTCCCGCCAGCTGCACAATTCACCTCGAAATGGTTGTGTACTAAGGACCACAGAAGATTTTATTGCTGAAATACTGGGTTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGA</canonical>
            <polymorphic>TTTGAAAATTTCTTTGCATTAGTTATTTCGGTCCCCTTCCCGCTCCACCAACACTTTCTCTCTGTTTTTGTGTGTGTCAACAACATATGGTTGATGCTCCGAAAGCAGAGCTCATTGTTTTTGAATTTACAAATAGTATATCCATGTTCCTTTATATGGGGGAAACCAAAATGCTCTGTGTGAAGAGCCCGACCGAGAGCATTTTGCGGGCATTTTGTGGTAAACAAGTGGGAAATGAAACGTATAAGAGGACGAGAAAAGAAAGGTCTGAATATGTCGACCTCCGTTACTAATCTTTCATTGTGCTCCGTCTTGTGTCCCGCCAGCTGCACAATTCACCTCGAAATGGTTGTGTACTAAGGACCACAGAAGATTTTATTGCTGAAATACTGGGTTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTKGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAAATTTATGGTTTACGACTG</pcr_primer_p1>
		<pcr_primer_p2>GTTGAGAAGTGAAGTGTTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAAC</canonical_amplicon>
		<polymorphic_amplicon>TTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTKGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14718</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>320003</contig_pos>
        <strand>+</strand>
        <context>TGAACTATAG[A/G]TTTTCTCGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAG</left_flank>
        <right_flank>TTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCG</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGCCCCCACGGACCACGCGCATTTTGAAAATTTCTTTGCATTAGTTATTTCGGTCCCCTTCCCGCTCCACCAACACTTTCTCTCTGTTTTTGTGTGTGTCAACAACATATGGTTGATGCTCCGAAAGCAGAGCTCATTGTTTTTGAATTTACAAATAGTATATCCATGTTCCTTTATATGGGGGAAACCAAAATGCTCTGTGTGAAGAGCCCGACCGAGAGCATTTTGCGGGCATTTTGTGGTAAACAAGTGGGAAATGAAACGTATAAGAGGACGAGAAAAGAAAGGTCTGAATATGTCGACCTCCGTTACTAATCTTTCATTGTGCTCCGTCTTGTGTCCCGCCAGCTGCACAATTCACCTCGAAATGGTTGTGTACTAAGGACCACAGAAGATTTTATTGCTGAAATACTGGGTTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTC</canonical>
            <polymorphic>CGGCCCCCACGGACCACGCGCATTTTGAAAATTTCTTTGCATTAGTTATTTCGGTCCCCTTCCCGCTCCACCAACACTTTCTCTCTGTTTTTGTGTGTGTCAACAACATATGGTTGATGCTCCGAAAGCAGAGCTCATTGTTTTTGAATTTACAAATAGTATATCCATGTTCCTTTATATGGGGGAAACCAAAATGCTCTGTGTGAAGAGCCCGACCGAGAGCATTTTGCGGGCATTTTGTGGTAAACAAGTGGGAAATGAAACGTATAAGAGGACGAGAAAAGAAAGGTCTGAATATGTCGACCTCCGTTACTAATCTTTCATTGTGCTCCGTCTTGTGTCCCGCCAGCTGCACAATTCACCTCGAAATGGTTGTGTACTAAGGACCACAGAAGATTTTATTGCTGAAATACTGGGTTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGRTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAAATTTATGGTTTACGACTG</pcr_primer_p1>
		<pcr_primer_p2>GTTGAGAAGTGAAGTGTTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAAC</canonical_amplicon>
		<polymorphic_amplicon>TTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGRTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14719</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>319968</contig_pos>
        <strand>+</strand>
        <context>TTTATTCTCT[C/T]TTTGCACTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGTTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCT</left_flank>
        <right_flank>TTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGGGTGCCTAGAAACCACTTCACTACTGAAACATCGGCCCCCACGGACCACGCGCATTTTGAAAATTTCTTTGCATTAGTTATTTCGGTCCCCTTCCCGCTCCACCAACACTTTCTCTCTGTTTTTGTGTGTGTCAACAACATATGGTTGATGCTCCGAAAGCAGAGCTCATTGTTTTTGAATTTACAAATAGTATATCCATGTTCCTTTATATGGGGGAAACCAAAATGCTCTGTGTGAAGAGCCCGACCGAGAGCATTTTGCGGGCATTTTGTGGTAAACAAGTGGGAAATGAAACGTATAAGAGGACGAGAAAAGAAAGGTCTGAATATGTCGACCTCCGTTACTAATCTTTCATTGTGCTCCGTCTTGTGTCCCGCCAGCTGCACAATTCACCTCGAAATGGTTGTGTACTAAGGACCACAGAAGATTTTATTGCTGAAATACTGGGTTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCCAATATGT</canonical>
            <polymorphic>ACGGGTGCCTAGAAACCACTTCACTACTGAAACATCGGCCCCCACGGACCACGCGCATTTTGAAAATTTCTTTGCATTAGTTATTTCGGTCCCCTTCCCGCTCCACCAACACTTTCTCTCTGTTTTTGTGTGTGTCAACAACATATGGTTGATGCTCCGAAAGCAGAGCTCATTGTTTTTGAATTTACAAATAGTATATCCATGTTCCTTTATATGGGGGAAACCAAAATGCTCTGTGTGAAGAGCCCGACCGAGAGCATTTTGCGGGCATTTTGTGGTAAACAAGTGGGAAATGAAACGTATAAGAGGACGAGAAAAGAAAGGTCTGAATATGTCGACCTCCGTTACTAATCTTTCATTGTGCTCCGTCTTGTGTCCCGCCAGCTGCACAATTCACCTCGAAATGGTTGTGTACTAAGGACCACAGAAGATTTTATTGCTGAAATACTGGGTTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTYTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCCAATATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATACTGGGTTGAAATTTATG</pcr_primer_p1>
		<pcr_primer_p2>TGAAGTGTTTTGAGAATTAAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAATACTGGGTTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCA</canonical_amplicon>
		<polymorphic_amplicon>GAAATACTGGGTTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTYTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14720</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>419735</contig_pos>
        <strand>+</strand>
        <context>GCTTTAAACG[A/G]CACGTCTCAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAGAATATATGAAAAACTGTCATATTCTACACCTTTTCGGCTTTAAACG</left_flank>
        <right_flank>CACGTCTCACGGGATTTGGCGAACAATTGCTAAATTAGCGGAAAAGTTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAATTCGAAATTCAGTTTTTGGAAGTTTTGGAATATTTTAAAATGCCAGAATTCGGATTTTTTGAGAGTCCGGAAAATCACAGGATTTCGAAAATTTTATTTTTGAGAAATCGAGAAAATACAAGATTTCGAAATTACGATATTTTGAGATTCCAATTCTAGAAAGTTCGGATTATTCCGGATTTCAGTTCTTTAAAGATTTGAAAAATCACGAGATTCCAAATATTCAAGAATGACGACACTTCGAAATTCTGGATTTCGAATTTTAAGAAAGTTGCAATATTTCGAGATTCCAATTTCCGCAATTTCGGAAAGTTACGAAATTTCGTGATTCCATTTTTTTTTAAATTTTCGAATTTCCGAAATTTCTAATTTTAAAATTTGCAAACCCCAGGGACTCGAAAATATAAAGTTTCATTTTGCACACCCCGAATGTTGATTAGAACAAGTAGAATATATGAAAAACTGTCATATTCTACACCTTTTCGGCTTTAAACGACACGTCTCACGGGATTTGGCGAACAATTGCTAAATTAGCGGAAAAGTTGTCAAAACAGTTATTCAAAATGTAGATTTTAAATTTTTCGGGACTCCAATACCAATACCAATGTCCCTTCAATCTCAAAAACCATTTTCCCTCTTTTAGGTTGATCACAAAACACTGATGCAATTCCACCAATTAAATCGCTCGCGCATTGAACTTCCCATCCTTTCTCCAACCTATCTACCAACCTAGCCGTCACATTTCCGGGCACGCAACAATCTCCAAAACATTCCTCACTCCTCTTTGTCTTCTGCCAAATGAAAACCGCGACACGCTGTCTCCTAAATACTCGACAATCCTCCCATTGACGCAAAGAAGAGTTGGCAAGAACAGAGTTCAATCTCGTTTCTTTGCGAGTCATCGGGAAGACGATGCAAGATGATCAAAAGAAGAAAGAGAGATTTCTTATCTCTTTTCTCTTCCCAACTTCCTCTTATCTCGCAGCCTAATGAATC</canonical>
            <polymorphic>GAAATTCGAAATTCAGTTTTTGGAAGTTTTGGAATATTTTAAAATGCCAGAATTCGGATTTTTTGAGAGTCCGGAAAATCACAGGATTTCGAAAATTTTATTTTTGAGAAATCGAGAAAATACAAGATTTCGAAATTACGATATTTTGAGATTCCAATTCTAGAAAGTTCGGATTATTCCGGATTTCAGTTCTTTAAAGATTTGAAAAATCACGAGATTCCAAATATTCAAGAATGACGACACTTCGAAATTCTGGATTTCGAATTTTAAGAAAGTTGCAATATTTCGAGATTCCAATTTCCGCAATTTCGGAAAGTTACGAAATTTCGTGATTCCATTTTTTTTTAAATTTTCGAATTTCCGAAATTTCTAATTTTAAAATTTGCAAACCCCAGGGACTCGAAAATATAAAGTTTCATTTTGCACACCCCGAATGTTGATTAGAACAAGTAGAATATATGAAAAACTGTCATATTCTACACCTTTTCGGCTTTAAACGRCACGTCTCACGGGATTTGGCGAACAATTGCTAAATTAGCGGAAAAGTTGTCAAAACAGTTATTCAAAATGTAGATTTTAAATTTTTCGGGACTCCAATACCAATACCAATGTCCCTTCAATCTCAAAAACCATTTTCCCTCTTTTAGGTTGATCACAAAACACTGATGCAATTCCACCAATTAAATCGCTCGCGCATTGAACTTCCCATCCTTTCTCCAACCTATCTACCAACCTAGCCGTCACATTTCCGGGCACGCAACAATCTCCAAAACATTCCTCACTCCTCTTTGTCTTCTGCCAAATGAAAACCGCGACACGCTGTCTCCTAAATACTCGACAATCCTCCCATTGACGCAAAGAAGAGTTGGCAAGAACAGAGTTCAATCTCGTTTCTTTGCGAGTCATCGGGAAGACGATGCAAGATGATCAAAAGAAGAAAGAGAGATTTCTTATCTCTTTTCTCTTCCCAACTTCCTCTTATCTCGCAGCCTAATGAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATAAAGTTTCATTTTGCACACC</pcr_primer_p1>
		<pcr_primer_p2>ATCAACCTAAAAGAGGGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TATAAAGTTTCATTTTGCACACCCCGAATGTTGATTAGAACAAGTAGAATATATGAAAAACTGTCATATTCTACACCTTTTCGGCTTTAAACGACACGTCTCACGGGATTTGGCGAACAATTGCTAAATTAGCGGAAAAGTTGTCAAAACAGTTATTCAAAATGTAGATTTTAAATTTTTCGGGACTCCAATACCAATACCAATGTCCCTTCAATCTCAAAAACCATTTTCCCTCTTTTAGGTTGAT</canonical_amplicon>
		<polymorphic_amplicon>TATAAAGTTTCATTTTGCACACCCCGAATGTTGATTAGAACAAGTAGAATATATGAAAAACTGTCATATTCTACACCTTTTCGGCTTTAAACGRCACGTCTCACGGGATTTGGCGAACAATTGCTAAATTAGCGGAAAAGTTGTCAAAACAGTTATTCAAAATGTAGATTTTAAATTTTTCGGGACTCCAATACCAATACCAATGTCCCTTCAATCTCAAAAACCATTTTCCCTCTTTTAGGTTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14721</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>425521</contig_pos>
        <strand>+</strand>
        <context>CTACTGTAGC[A/T]TCATTATACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGCTTGATTATAGCCTACTGTATTGTTTGAACATGATTGACTACTGTAGC</left_flank>
        <right_flank>TCATTATACATTATTTGAATAATTTATTATTTACGGTTCCATTGCTTTGT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAGAAAAGAGTGAAAGGCTACTTATCCTTCTTTTTTGTTGCCGAATCACGTATAGTTAGGGTGATCTCTTTTATATCAATGTAGGTAGAGAGGAGGCGGTTGAAAGAGGCGGGACCTGAAGGACATTGTACTTTGTGAATTTATTTCATCGTTGAAAAAAGATAGAGAATACTCATTCCTGTTTTTTTCTGGTCGTATGATACTGTAGAAGTGGGTAGCATTCAAATGAAGGACCGGAAAACGAATTCTTGAAGTGTTTTGGAAGTGCAAGGTGTTAGAGGGGACGAGAACAAAATGAAAAATAAAAAAAATAATTGAAATTTTGAAAAAATTTAGAAGTGCAAAAAACTCGGGTTACTGTAGATTTTTTAAAAAAATTTTCTGATATAGTTCGTGTATTCAGATGATGGACGAAATTACTGCATATTTAAAGGCTGATCGTGCTGCAGCTTGATTATAGCCTACTGTATTGTTTGAACATGATTGACTACTGTAGCATCATTATACATTATTTGAATAATTTATTATTTACGGTTCCATTGCTTTGTTTTTTTTGCACAAACAAAAATGAATATGACCCTTCGCCAAAGAAGAGTTTTGGGATGAAAATTTGAAAAAAAAGAGAAGAAAAGTGATACAGAAGAATCAAAAGACAGAAAAATAAAGGGCAAAAATAGAAGTAAAGTGCACCACACCAAGTTGAATTAAAGAGAAAATTTGAAAAAAATGCGAAACATGAAATTAAAGGATCCATAGGAATTAAAACAATGGAACACCGGAAACGGGAAGAGTGGGAAAAAAGTGACTCACACAAATGAACACGAAAAGAAAAATTTGAATAGGACAAATAAATTAAAATTAGCCCATTTTCTCTCTCCTTCAAAATAATTCCAGTTTTCAAAGTTTCCCAACCTACGGATCGTGGGAAAAATAAATTAATCACCATTGAGGGAAGGAACTGTACAGAAGAGTGGCTGGCTCGTAGTTCAGGAATGGAT</canonical>
            <polymorphic>GGAAGAAAAGAGTGAAAGGCTACTTATCCTTCTTTTTTGTTGCCGAATCACGTATAGTTAGGGTGATCTCTTTTATATCAATGTAGGTAGAGAGGAGGCGGTTGAAAGAGGCGGGACCTGAAGGACATTGTACTTTGTGAATTTATTTCATCGTTGAAAAAAGATAGAGAATACTCATTCCTGTTTTTTTCTGGTCGTATGATACTGTAGAAGTGGGTAGCATTCAAATGAAGGACCGGAAAACGAATTCTTGAAGTGTTTTGGAAGTGCAAGGTGTTAGAGGGGACGAGAACAAAATGAAAAATAAAAAAAATAATTGAAATTTTGAAAAAATTTAGAAGTGCAAAAAACTCGGGTTACTGTAGATTTTTTAAAAAAATTTTCTGATATAGTTCGTGTATTCAGATGATGGACGAAATTACTGCATATTTAAAGGCTGATCGTGCTGCAGCTTGATTATAGCCTACTGTATTGTTTGAACATGATTGACTACTGTAGCWTCATTATACATTATTTGAATAATTTATTATTTACGGTTCCATTGCTTTGTTTTTTTTGCACAAACAAAAATGAATATGACCCTTCGCCAAAGAAGAGTTTTGGGATGAAAATTTGAAAAAAAAGAGAAGAAAAGTGATACAGAAGAATCAAAAGACAGAAAAATAAAGGGCAAAAATAGAAGTAAAGTGCACCACACCAAGTTGAATTAAAGAGAAAATTTGAAAAAAATGCGAAACATGAAATTAAAGGATCCATAGGAATTAAAACAATGGAACACCGGAAACGGGAAGAGTGGGAAAAAAGTGACTCACACAAATGAACACGAAAAGAAAAATTTGAATAGGACAAATAAATTAAAATTAGCCCATTTTCTCTCTCCTTCAAAATAATTCCAGTTTTCAAAGTTTCCCAACCTACGGATCGTGGGAAAAATAAATTAATCACCATTGAGGGAAGGAACTGTACAGAAGAGTGGCTGGCTCGTAGTTCAGGAATGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACTGCATATTTAAAGGCTGAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTGTCTTTTGATTCTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTACTGCATATTTAAAGGCTGATCGTGCTGCAGCTTGATTATAGCCTACTGTATTGTTTGAACATGATTGACTACTGTAGCATCATTATACATTATTTGAATAATTTATTATTTACGGTTCCATTGCTTTGTTTTTTTTGCACAAACAAAAATGAATATGACCCTTCGCCAAAGAAGAGTTTTGGGATGAAAATTTGAAAAAAAAGAGAAGAAAAGTGATACAGAAGAATCAAAAGACAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTACTGCATATTTAAAGGCTGATCGTGCTGCAGCTTGATTATAGCCTACTGTATTGTTTGAACATGATTGACTACTGTAGCWTCATTATACATTATTTGAATAATTTATTATTTACGGTTCCATTGCTTTGTTTTTTTTGCACAAACAAAAATGAATATGACCCTTCGCCAAAGAAGAGTTTTGGGATGAAAATTTGAAAAAAAAGAGAAGAAAAGTGATACAGAAGAATCAAAAGACAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14722</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>450825</contig_pos>
        <strand></strand>
        <context>agactgaagc[A/G]atgtcatatc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATTCCTTGTTCGAAACCACAAACTTAAAAGCCCGAACGAGACTGAAGC</left_flank>
        <right_flank>ATGTCATATCCTTGCTTTGTAGATCAAACCAATTCCAAGACGAAAAATTC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCTATATCTTTCACAGGTATCAAGATAATTGATGTCAACGTTGATAGTTTGGAAGCCCTTCTATTACATGTTTTACGGTACAGAAATTTTTTTTGCCAATATTGAACTCACATTTTTTTTGAAGATGTTCGAATTCCGATCATCTCGTGAAAATTATTTCTTAATTCAATGTTAACACATTTTTTTCGGAAGAGATATCAAAAACTTATAAACTGGTAAGATTTTTTTAAATTTTTCACATTTTAAAAGACCTTTAGAAATTCAAATATCGAGATTTTTCCAAATTATGTCGAATTAGCAAAAGTCTGGCATCTGAAAATTTTCTTTTGTTTTAGAAAGACCTGCCCGAAAACAAAATAAAGCGAATATGGATTCTGATAATTTCTAGATATTTTCTGAACGAAATCCAGATTTCTTGGTAAAAATGTGATCACTAGCCTTTTTAACAATTCCTTGTTCGAAACCACAAACTTAAAAGCCCGAACGAGACTGAAGCAATGTCATATCCTTGCTTTGTAGATCAAACCAATTCCAAGACGAAAAATTCGCCGATAAGAAACATTCAAAAAAATATTTTTTCAGAAAAGCAAAAGTATTTCTTCTTACTTCTGTAAACAATAGCAGTTTTTGAAATTTGTGGTTTTTTCCAGGAATAATTCAGTTTTTGTGTTTTCTTTGATGCCAAAACATGTGTAAAAGAAAAACGGAAGGATAAATGAAGAAACATTTGATCTTCTTGCAAATCAAAGAGATAAGTGATATTGAAGAGTGATTGGCGGAGAATTGAGCATTCTCTCTCCCCATTTCATCTCATTCACATTTTGTTTATTTTATCTACCAGATGTTTTCTCCACTCTTTCTTGAGTTTTGCTCACTTTTGTTGGTAGTCTTGAATACAAAAACACTTTAGGGGCTCAAGTTTTTTTTGCGAAGCATTTGCAGTTTATTTAAAAGAACAAAACAAAAAGAAAAAAGTGATTTTCCCAGTTCGCAGCAC</canonical>
            <polymorphic>TTTCCTATATCTTTCACAGGTATCAAGATAATTGATGTCAACGTTGATAGTTTGGAAGCCCTTCTATTACATGTTTTACGGTACAGAAATTTTTTTTGCCAATATTGAACTCACATTTTTTTTGAAGATGTTCGAATTCCGATCATCTCGTGAAAATTATTTCTTAATTCAATGTTAACACATTTTTTTCGGAAGAGATATCAAAAACTTATAAACTGGTAAGATTTTTTTAAATTTTTCACATTTTAAAAGACCTTTAGAAATTCAAATATCGAGATTTTTCCAAATTATGTCGAATTAGCAAAAGTCTGGCATCTGAAAATTTTCTTTTGTTTTAGAAAGACCTGCCCGAAAACAAAATAAAGCGAATATGGATTCTGATAATTTCTAGATATTTTCTGAACGAAATCCAGATTTCTTGGTAAAAATGTGATCACTAGCCTTTTTAACAATTCCTTGTTCGAAACCACAAACTTAAAAGCCCGAACGAGACTGAAGCRATGTCATATCCTTGCTTTGTAGATCAAACCAATTCCAAGACGAAAAATTCGCCGATAAGAAACATTCAAAAAAATATTTTTTCAGAAAAGCAAAAGTATTTCTTCTTACTTCTGTAAACAATAGCAGTTTTTGAAATTTGTGGTTTTTTCCAGGAATAATTCAGTTTTTGTGTTTTCTTTGATGCCAAAACATGTGTAAAAGAAAAACGGAAGGATAAATGAAGAAACATTTGATCTTCTTGCAAATCAAAGAGATAAGTGATATTGAAGAGTGATTGGCGGAGAATTGAGCATTCTCTCTCCCCATTTCATCTCATTCACATTTTGTTTATTTTATCTACCAGATGTTTTCTCCACTCTTTCTTGAGTTTTGCTCACTTTTGTTGGTAGTCTTGAATACAAAAACACTTTAGGGGCTCAAGTTTTTTTTGCGAAGCATTTGCAGTTTATTTAAAAGAACAAAACAAAAAGAAAAAAGTGATTTTCCCAGTTCGCAGCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACAAAATAAAGCGAATATGG</pcr_primer_p1>
		<pcr_primer_p2>AAGAAATACTTTTGCTTTTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAACAAAATAAAGCGAATATGGATTCTGATAATTTCTAGATATTTTCTGAACGAAATCCAGATTTCTTGGTAAAAATGTGATCACTAGCCTTTTTAACAATTCCTTGTTCGAAACCACAAACTTAAAAGCCCGAACGAGACTGAAGCAATGTCATATCCTTGCTTTGTAGATCAAACCAATTCCAAGACGAAAAATTCGCCGATAAGAAACATTCAAAAAAATATTTTTTCAGAAAAGCAAAAGTATTTCTT</canonical_amplicon>
		<polymorphic_amplicon>AAACAAAATAAAGCGAATATGGATTCTGATAATTTCTAGATATTTTCTGAACGAAATCCAGATTTCTTGGTAAAAATGTGATCACTAGCCTTTTTAACAATTCCTTGTTCGAAACCACAAACTTAAAAGCCCGAACGAGACTGAAGCRATGTCATATCCTTGCTTTGTAGATCAAACCAATTCCAAGACGAAAAATTCGCCGATAAGAAACATTCAAAAAAATATTTTTTCAGAAAAGCAAAAGTATTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14723</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>450933</contig_pos>
        <strand>+</strand>
        <context>ATTTCTTCTT[A/G]CTTCTSTAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAACATTCAAAAAAATATTTTTTCAGAAAAGCAAAAGTATTTCTTCTT</left_flank>
        <right_flank>CTTCTGTAAACAATAGCAGTTTTTGAAATTTGTGGTTTTTTCCAGGAATA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCACATTTTTTTTGAAGATGTTCGAATTCCGATCATCTCGTGAAAATTATTTCTTAATTCAATGTTAACACATTTTTTTCGGAAGAGATATCAAAAACTTATAAACTGGTAAGATTTTTTTAAATTTTTCACATTTTAAAAGACCTTTAGAAATTCAAATATCGAGATTTTTCCAAATTATGTCGAATTAGCAAAAGTCTGGCATCTGAAAATTTTCTTTTGTTTTAGAAAGACCTGCCCGAAAACAAAATAAAGCGAATATGGATTCTGATAATTTCTAGATATTTTCTGAACGAAATCCAGATTTCTTGGTAAAAATGTGATCACTAGCCTTTTTAACAATTCCTTGTTCGAAACCACAAACTTAAAAGCCCGAACGAGACTGAAGCAATGTCATATCCTTGCTTTGTAGATCAAACCAATTCCAAGACGAAAAATTCGCCGATAAGAAACATTCAAAAAAATATTTTTTCAGAAAAGCAAAAGTATTTCTTCTTACTTCTGTAAACAATAGCAGTTTTTGAAATTTGTGGTTTTTTCCAGGAATAATTCAGTTTTTGTGTTTTCTTTGATGCCAAAACATGTGTAAAAGAAAAACGGAAGGATAAATGAAGAAACATTTGATCTTCTTGCAAATCAAAGAGATAAGTGATATTGAAGAGTGATTGGCGGAGAATTGAGCATTCTCTCTCCCCATTTCATCTCATTCACATTTTGTTTATTTTATCTACCAGATGTTTTCTCCACTCTTTCTTGAGTTTTGCTCACTTTTGTTGGTAGTCTTGAATACAAAAACACTTTAGGGGCTCAAGTTTTTTTTGCGAAGCATTTGCAGTTTATTTAAAAGAACAAAACAAAAAGAAAAAAGTGATTTTCCCAGTTCGCAGCACGACAAGTTTCCAGAAAAAGTAGGAGAAGAATGGGATGGGAAGGAAAAATGGAAAGAAAACAATTTAAAAAATCATAAAAATAAGAAAAAGGAGAAGACGAAACGATTC</canonical>
            <polymorphic>ACTCACATTTTTTTTGAAGATGTTCGAATTCCGATCATCTCGTGAAAATTATTTCTTAATTCAATGTTAACACATTTTTTTCGGAAGAGATATCAAAAACTTATAAACTGGTAAGATTTTTTTAAATTTTTCACATTTTAAAAGACCTTTAGAAATTCAAATATCGAGATTTTTCCAAATTATGTCGAATTAGCAAAAGTCTGGCATCTGAAAATTTTCTTTTGTTTTAGAAAGACCTGCCCGAAAACAAAATAAAGCGAATATGGATTCTGATAATTTCTAGATATTTTCTGAACGAAATCCAGATTTCTTGGTAAAAATGTGATCACTAGCCTTTTTAACAATTCCTTGTTCGAAACCACAAACTTAAAAGCCCGAACGAGACTGAAGCAATGTCATATCCTTGCTTTGTAGATCAAACCAATTCCAAGACGAAAAATTCGCCGATAAGAAACATTCAAAAAAATATTTTTTCAGAAAAGCAAAAGTATTTCTTCTTRCTTCTGTAAACAATAGCAGTTTTTGAAATTTGTGGTTTTTTCCAGGAATAATTCAGTTTTTGTGTTTTCTTTGATGCCAAAACATGTGTAAAAGAAAAACGGAAGGATAAATGAAGAAACATTTGATCTTCTTGCAAATCAAAGAGATAAGTGATATTGAAGAGTGATTGGCGGAGAATTGAGCATTCTCTCTCCCCATTTCATCTCATTCACATTTTGTTTATTTTATCTACCAGATGTTTTCTCCACTCTTTCTTGAGTTTTGCTCACTTTTGTTGGTAGTCTTGAATACAAAAACACTTTAGGGGCTCAAGTTTTTTTTGCGAAGCATTTGCAGTTTATTTAAAAGAACAAAACAAAAAGAAAAAAGTGATTTTCCCAGTTCGCAGCACGACAAGTTTCCAGAAAAAGTAGGAGAAGAATGGGATGGGAAGGAAAAATGGAAAGAAAACAATTTAAAAAATCATAAAAATAAGAAAAAGGAGAAGACGAAACGATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTCGCCGATAAGAAAC</pcr_primer_p1>
		<pcr_primer_p2>CCAATCACTCTTCAATATCACTT</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>AAAATTCGCCGATAAGAAACATTCAAAAAAATATTTTTTCAGAAAAGCAAAAGTATTTCTTCTTACTTCTGTAAACAATAGCAGTTTTTGAAATTTGTGGTTTTTTCCAGGAATAATTCAGTTTTTGTGTTTTCTTTGATGCCAAAACATGTGTAAAAGAAAAACGGAAGGATAAATGAAGAAACATTTGATCTTCTTGCAAATCAAAGAGATAAGTGATATTGAAGAGTGATTGG</canonical_amplicon>
		<polymorphic_amplicon>AAAATTCGCCGATAAGAAACATTCAAAAAAATATTTTTTCAGAAAAGCAAAAGTATTTCTTCTTRCTTCTGTAAACAATAGCAGTTTTTGAAATTTGTGGTTTTTTCCAGGAATAATTCAGTTTTTGTGTTTTCTTTGATGCCAAAACATGTGTAAAAGAAAAACGGAAGGATAAATGAAGAAACATTTGATCTTCTTGCAAATCAAAGAGATAAGTGATATTGAAGAGTGATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14724</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>450939</contig_pos>
        <strand>+</strand>
        <context>TCTTRCTTCT[C/G]TAAACAATAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTCAAAAAAATATTTTTTCAGAAAAGCAAAAGTATTTCTTCTTACTTCT</left_flank>
        <right_flank>TAAACAATAGCAGTTTTTGAAATTTGTGGTTTTTTCCAGGAATAATTCAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTTTTGAAGATGTTCGAATTCCGATCATCTCGTGAAAATTATTTCTTAATTCAATGTTAACACATTTTTTTCGGAAGAGATATCAAAAACTTATAAACTGGTAAGATTTTTTTAAATTTTTCACATTTTAAAAGACCTTTAGAAATTCAAATATCGAGATTTTTCCAAATTATGTCGAATTAGCAAAAGTCTGGCATCTGAAAATTTTCTTTTGTTTTAGAAAGACCTGCCCGAAAACAAAATAAAGCGAATATGGATTCTGATAATTTCTAGATATTTTCTGAACGAAATCCAGATTTCTTGGTAAAAATGTGATCACTAGCCTTTTTAACAATTCCTTGTTCGAAACCACAAACTTAAAAGCCCGAACGAGACTGAAGCAATGTCATATCCTTGCTTTGTAGATCAAACCAATTCCAAGACGAAAAATTCGCCGATAAGAAACATTCAAAAAAATATTTTTTCAGAAAAGCAAAAGTATTTCTTCTTACTTCTGTAAACAATAGCAGTTTTTGAAATTTGTGGTTTTTTCCAGGAATAATTCAGTTTTTGTGTTTTCTTTGATGCCAAAACATGTGTAAAAGAAAAACGGAAGGATAAATGAAGAAACATTTGATCTTCTTGCAAATCAAAGAGATAAGTGATATTGAAGAGTGATTGGCGGAGAATTGAGCATTCTCTCTCCCCATTTCATCTCATTCACATTTTGTTTATTTTATCTACCAGATGTTTTCTCCACTCTTTCTTGAGTTTTGCTCACTTTTGTTGGTAGTCTTGAATACAAAAACACTTTAGGGGCTCAAGTTTTTTTTGCGAAGCATTTGCAGTTTATTTAAAAGAACAAAACAAAAAGAAAAAAGTGATTTTCCCAGTTCGCAGCACGACAAGTTTCCAGAAAAAGTAGGAGAAGAATGGGATGGGAAGGAAAAATGGAAAGAAAACAATTTAAAAAATCATAAAAATAAGAAAAAGGAGAAGACGAAACGATTCCAGGAG</canonical>
            <polymorphic>ATTTTTTTTGAAGATGTTCGAATTCCGATCATCTCGTGAAAATTATTTCTTAATTCAATGTTAACACATTTTTTTCGGAAGAGATATCAAAAACTTATAAACTGGTAAGATTTTTTTAAATTTTTCACATTTTAAAAGACCTTTAGAAATTCAAATATCGAGATTTTTCCAAATTATGTCGAATTAGCAAAAGTCTGGCATCTGAAAATTTTCTTTTGTTTTAGAAAGACCTGCCCGAAAACAAAATAAAGCGAATATGGATTCTGATAATTTCTAGATATTTTCTGAACGAAATCCAGATTTCTTGGTAAAAATGTGATCACTAGCCTTTTTAACAATTCCTTGTTCGAAACCACAAACTTAAAAGCCCGAACGAGACTGAAGCAATGTCATATCCTTGCTTTGTAGATCAAACCAATTCCAAGACGAAAAATTCGCCGATAAGAAACATTCAAAAAAATATTTTTTCAGAAAAGCAAAAGTATTTCTTCTTACTTCTSTAAACAATAGCAGTTTTTGAAATTTGTGGTTTTTTCCAGGAATAATTCAGTTTTTGTGTTTTCTTTGATGCCAAAACATGTGTAAAAGAAAAACGGAAGGATAAATGAAGAAACATTTGATCTTCTTGCAAATCAAAGAGATAAGTGATATTGAAGAGTGATTGGCGGAGAATTGAGCATTCTCTCTCCCCATTTCATCTCATTCACATTTTGTTTATTTTATCTACCAGATGTTTTCTCCACTCTTTCTTGAGTTTTGCTCACTTTTGTTGGTAGTCTTGAATACAAAAACACTTTAGGGGCTCAAGTTTTTTTTGCGAAGCATTTGCAGTTTATTTAAAAGAACAAAACAAAAAGAAAAAAGTGATTTTCCCAGTTCGCAGCACGACAAGTTTCCAGAAAAAGTAGGAGAAGAATGGGATGGGAAGGAAAAATGGAAAGAAAACAATTTAAAAAATCATAAAAATAAGAAAAAGGAGAAGACGAAACGATTCCAGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 440 62</canonical_bands>
                <polymorphic_bands>938 62</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTCGCCGATAAGAAAC</pcr_primer_p1>
		<pcr_primer_p2>CCAATCACTCTTCAATATCACTT</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>AAAATTCGCCGATAAGAAACATTCAAAAAAATATTTTTTCAGAAAAGCAAAAGTATTTCTTCTTACTTCTGTAAACAATAGCAGTTTTTGAAATTTGTGGTTTTTTCCAGGAATAATTCAGTTTTTGTGTTTTCTTTGATGCCAAAACATGTGTAAAAGAAAAACGGAAGGATAAATGAAGAAACATTTGATCTTCTTGCAAATCAAAGAGATAAGTGATATTGAAGAGTGATTGG</canonical_amplicon>
		<polymorphic_amplicon>AAAATTCGCCGATAAGAAACATTCAAAAAAATATTTTTTCAGAAAAGCAAAAGTATTTCTTCTTACTTCTSTAAACAATAGCAGTTTTTGAAATTTGTGGTTTTTTCCAGGAATAATTCAGTTTTTGTGTTTTCTTTGATGCCAAAACATGTGTAAAAGAAAAACGGAAGGATAAATGAAGAAACATTTGATCTTCTTGCAAATCAAAGAGATAAGTGATATTGAAGAGTGATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14725</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>451039</contig_pos>
        <strand>+</strand>
        <context>AAAACGGAAG[A/G]ATAAAWGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTTTGTGTTTTCTTTGATGCCAAAACATGTGTAAAAGAAAAACGGAAG</left_flank>
        <right_flank>ATAAATGAAGAAACATTTGATCTTCTTGCAAATCAAAGAGATAAGTGATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGGTAAGATTTTTTTAAATTTTTCACATTTTAAAAGACCTTTAGAAATTCAAATATCGAGATTTTTCCAAATTATGTCGAATTAGCAAAAGTCTGGCATCTGAAAATTTTCTTTTGTTTTAGAAAGACCTGCCCGAAAACAAAATAAAGCGAATATGGATTCTGATAATTTCTAGATATTTTCTGAACGAAATCCAGATTTCTTGGTAAAAATGTGATCACTAGCCTTTTTAACAATTCCTTGTTCGAAACCACAAACTTAAAAGCCCGAACGAGACTGAAGCAATGTCATATCCTTGCTTTGTAGATCAAACCAATTCCAAGACGAAAAATTCGCCGATAAGAAACATTCAAAAAAATATTTTTTCAGAAAAGCAAAAGTATTTCTTCTTACTTCTGTAAACAATAGCAGTTTTTGAAATTTGTGGTTTTTTCCAGGAATAATTCAGTTTTTGTGTTTTCTTTGATGCCAAAACATGTGTAAAAGAAAAACGGAAGGATAAATGAAGAAACATTTGATCTTCTTGCAAATCAAAGAGATAAGTGATATTGAAGAGTGATTGGCGGAGAATTGAGCATTCTCTCTCCCCATTTCATCTCATTCACATTTTGTTTATTTTATCTACCAGATGTTTTCTCCACTCTTTCTTGAGTTTTGCTCACTTTTGTTGGTAGTCTTGAATACAAAAACACTTTAGGGGCTCAAGTTTTTTTTGCGAAGCATTTGCAGTTTATTTAAAAGAACAAAACAAAAAGAAAAAAGTGATTTTCCCAGTTCGCAGCACGACAAGTTTCCAGAAAAAGTAGGAGAAGAATGGGATGGGAAGGAAAAATGGAAAGAAAACAATTTAAAAAATCATAAAAATAAGAAAAAGGAGAAGACGAAACGATTCCAGGAGAATGACCAATTCTATTCATTTTAGTCTTTTGCAAGAATTTCAGAAAGGAAGAAAAAATAGGCGCCAATAACATTTTGAATGTGGAAGATGGGTTGGAAAA</canonical>
            <polymorphic>ACTGGTAAGATTTTTTTAAATTTTTCACATTTTAAAAGACCTTTAGAAATTCAAATATCGAGATTTTTCCAAATTATGTCGAATTAGCAAAAGTCTGGCATCTGAAAATTTTCTTTTGTTTTAGAAAGACCTGCCCGAAAACAAAATAAAGCGAATATGGATTCTGATAATTTCTAGATATTTTCTGAACGAAATCCAGATTTCTTGGTAAAAATGTGATCACTAGCCTTTTTAACAATTCCTTGTTCGAAACCACAAACTTAAAAGCCCGAACGAGACTGAAGCAATGTCATATCCTTGCTTTGTAGATCAAACCAATTCCAAGACGAAAAATTCGCCGATAAGAAACATTCAAAAAAATATTTTTTCAGAAAAGCAAAAGTATTTCTTCTTACTTCTGTAAACAATAGCAGTTTTTGAAATTTGTGGTTTTTTCCAGGAATAATTCAGTTTTTGTGTTTTCTTTGATGCCAAAACATGTGTAAAAGAAAAACGGAAGRATAAATGAAGAAACATTTGATCTTCTTGCAAATCAAAGAGATAAGTGATATTGAAGAGTGATTGGCGGAGAATTGAGCATTCTCTCTCCCCATTTCATCTCATTCACATTTTGTTTATTTTATCTACCAGATGTTTTCTCCACTCTTTCTTGAGTTTTGCTCACTTTTGTTGGTAGTCTTGAATACAAAAACACTTTAGGGGCTCAAGTTTTTTTTGCGAAGCATTTGCAGTTTATTTAAAAGAACAAAACAAAAAGAAAAAAGTGATTTTCCCAGTTCGCAGCACGACAAGTTTCCAGAAAAAGTAGGAGAAGAATGGGATGGGAAGGAAAAATGGAAAGAAAACAATTTAAAAAATCATAAAAATAAGAAAAAGGAGAAGACGAAACGATTCCAGGAGAATGACCAATTCTATTCATTTTAGTCTTTTGCAAGAATTTCAGAAAGGAAGAAAAAATAGGCGCCAATAACATTTTGAATGTGGAAGATGGGTTGGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAGCAGTTTTTGAAATTTGTG</pcr_primer_p1>
		<pcr_primer_p2>ACTCAAGAAAGAGTGGAGAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATAGCAGTTTTTGAAATTTGTGGTTTTTTCCAGGAATAATTCAGTTTTTGTGTTTTCTTTGATGCCAAAACATGTGTAAAAGAAAAACGGAAGGATAAATGAAGAAACATTTGATCTTCTTGCAAATCAAAGAGATAAGTGATATTGAAGAGTGATTGGCGGAGAATTGAGCATTCTCTCTCCCCATTTCATCTCATTCACATTTTGTTTATTTTATCTACCAGATGTTTTCTCCACTCTTTCTTGAGT</canonical_amplicon>
		<polymorphic_amplicon>AATAGCAGTTTTTGAAATTTGTGGTTTTTTCCAGGAATAATTCAGTTTTTGTGTTTTCTTTGATGCCAAAACATGTGTAAAAGAAAAACGGAAGRATAAATGAAGAAACATTTGATCTTCTTGCAAATCAAAGAGATAAGTGATATTGAAGAGTGATTGGCGGAGAATTGAGCATTCTCTCTCCCCATTTCATCTCATTCACATTTTGTTTATTTTATCTACCAGATGTTTTCTCCACTCTTTCTTGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14726</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>451045</contig_pos>
        <strand>+</strand>
        <context>GAAGRATAAA[A/T]GAAGAAACAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGTTTTCTTTGATGCCAAAACATGTGTAAAAGAAAAACGGAAGGATAAA</left_flank>
        <right_flank>GAAGAAACATTTGATCTTCTTGCAAATCAAAGAGATAAGTGATATTGAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGATTTTTTTAAATTTTTCACATTTTAAAAGACCTTTAGAAATTCAAATATCGAGATTTTTCCAAATTATGTCGAATTAGCAAAAGTCTGGCATCTGAAAATTTTCTTTTGTTTTAGAAAGACCTGCCCGAAAACAAAATAAAGCGAATATGGATTCTGATAATTTCTAGATATTTTCTGAACGAAATCCAGATTTCTTGGTAAAAATGTGATCACTAGCCTTTTTAACAATTCCTTGTTCGAAACCACAAACTTAAAAGCCCGAACGAGACTGAAGCAATGTCATATCCTTGCTTTGTAGATCAAACCAATTCCAAGACGAAAAATTCGCCGATAAGAAACATTCAAAAAAATATTTTTTCAGAAAAGCAAAAGTATTTCTTCTTACTTCTGTAAACAATAGCAGTTTTTGAAATTTGTGGTTTTTTCCAGGAATAATTCAGTTTTTGTGTTTTCTTTGATGCCAAAACATGTGTAAAAGAAAAACGGAAGGATAAATGAAGAAACATTTGATCTTCTTGCAAATCAAAGAGATAAGTGATATTGAAGAGTGATTGGCGGAGAATTGAGCATTCTCTCTCCCCATTTCATCTCATTCACATTTTGTTTATTTTATCTACCAGATGTTTTCTCCACTCTTTCTTGAGTTTTGCTCACTTTTGTTGGTAGTCTTGAATACAAAAACACTTTAGGGGCTCAAGTTTTTTTTGCGAAGCATTTGCAGTTTATTTAAAAGAACAAAACAAAAAGAAAAAAGTGATTTTCCCAGTTCGCAGCACGACAAGTTTCCAGAAAAAGTAGGAGAAGAATGGGATGGGAAGGAAAAATGGAAAGAAAACAATTTAAAAAATCATAAAAATAAGAAAAAGGAGAAGACGAAACGATTCCAGGAGAATGACCAATTCTATTCATTTTAGTCTTTTGCAAGAATTTCAGAAAGGAAGAAAAAATAGGCGCCAATAACATTTTGAATGTGGAAGATGGGTTGGAAAATGGGGT</canonical>
            <polymorphic>AAGATTTTTTTAAATTTTTCACATTTTAAAAGACCTTTAGAAATTCAAATATCGAGATTTTTCCAAATTATGTCGAATTAGCAAAAGTCTGGCATCTGAAAATTTTCTTTTGTTTTAGAAAGACCTGCCCGAAAACAAAATAAAGCGAATATGGATTCTGATAATTTCTAGATATTTTCTGAACGAAATCCAGATTTCTTGGTAAAAATGTGATCACTAGCCTTTTTAACAATTCCTTGTTCGAAACCACAAACTTAAAAGCCCGAACGAGACTGAAGCAATGTCATATCCTTGCTTTGTAGATCAAACCAATTCCAAGACGAAAAATTCGCCGATAAGAAACATTCAAAAAAATATTTTTTCAGAAAAGCAAAAGTATTTCTTCTTACTTCTGTAAACAATAGCAGTTTTTGAAATTTGTGGTTTTTTCCAGGAATAATTCAGTTTTTGTGTTTTCTTTGATGCCAAAACATGTGTAAAAGAAAAACGGAAGGATAAAWGAAGAAACATTTGATCTTCTTGCAAATCAAAGAGATAAGTGATATTGAAGAGTGATTGGCGGAGAATTGAGCATTCTCTCTCCCCATTTCATCTCATTCACATTTTGTTTATTTTATCTACCAGATGTTTTCTCCACTCTTTCTTGAGTTTTGCTCACTTTTGTTGGTAGTCTTGAATACAAAAACACTTTAGGGGCTCAAGTTTTTTTTGCGAAGCATTTGCAGTTTATTTAAAAGAACAAAACAAAAAGAAAAAAGTGATTTTCCCAGTTCGCAGCACGACAAGTTTCCAGAAAAAGTAGGAGAAGAATGGGATGGGAAGGAAAAATGGAAAGAAAACAATTTAAAAAATCATAAAAATAAGAAAAAGGAGAAGACGAAACGATTCCAGGAGAATGACCAATTCTATTCATTTTAGTCTTTTGCAAGAATTTCAGAAAGGAAGAAAAAATAGGCGCCAATAACATTTTGAATGTGGAAGATGGGTTGGAAAATGGGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAGCAGTTTTTGAAATTTGTG</pcr_primer_p1>
		<pcr_primer_p2>ACTCAAGAAAGAGTGGAGAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATAGCAGTTTTTGAAATTTGTGGTTTTTTCCAGGAATAATTCAGTTTTTGTGTTTTCTTTGATGCCAAAACATGTGTAAAAGAAAAACGGAAGGATAAATGAAGAAACATTTGATCTTCTTGCAAATCAAAGAGATAAGTGATATTGAAGAGTGATTGGCGGAGAATTGAGCATTCTCTCTCCCCATTTCATCTCATTCACATTTTGTTTATTTTATCTACCAGATGTTTTCTCCACTCTTTCTTGAGT</canonical_amplicon>
		<polymorphic_amplicon>AATAGCAGTTTTTGAAATTTGTGGTTTTTTCCAGGAATAATTCAGTTTTTGTGTTTTCTTTGATGCCAAAACATGTGTAAAAGAAAAACGGAAGGATAAAWGAAGAAACATTTGATCTTCTTGCAAATCAAAGAGATAAGTGATATTGAAGAGTGATTGGCGGAGAATTGAGCATTCTCTCTCCCCATTTCATCTCATTCACATTTTGTTTATTTTATCTACCAGATGTTTTCTCCACTCTTTCTTGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14727</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>453116</contig_pos>
        <strand>+</strand>
        <context>GTATGGAATT[A/G]TTTCGGTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTGGCGTTTGAGACATATATTTTAAAAAAATGGAAATTTGTATGGAATT</left_flank>
        <right_flank>TTTCGGTTTTTAGGATGTTTTTTTGGCTCAGTTCTGAGATACACTCAAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAATCGAAAGGTAATTTCTCACCTGTCAACGTCTTCCGGAAGGTTGGAGTTGGTTGTTTGGAGAATGAGTAGGTCGTATTGCTTGGCCGGCTTGCTCATGTCGGGGAGTGAAGAGCGAAGAGCAGCTCCACCAGCAGATCGAGGACCTCCAGCGGTTCCGGATTCGGTGATGGAATCTGGAAAATTGATTATGTTGATATGTTTCATACATTATTCAAGTATTATTCCCTATTCAGTGGTGGGACCAAGCTGATTTTATTCTTCAACTTTTAAGATTTAGACCCCAGCCACTCTAAAATTTTTTTACCCTTTGAATGATTTGTCAATTTTTACATATGAGAAAATTTCGAGAAATCAAACTCAAGGGCAAAACTTTATGAATGTGGAGTAGCTACCGACAAAGCTACGTGGTCATAAAAGTAAGCCACAAATGATGATCTTTATGAGACTGGCGTTTGAGACATATATTTTAAAAAAATGGAAATTTGTATGGAATTATTTCGGTTTTTAGGATGTTTTTTTGGCTCAGTTCTGAGATACACTCAAAAATAAAATCTATTCTTGATTTCTAATAGGTCTCTTTGATTTAGCTATTACAAACCACTTATTTTTGTCATTGTCACCAAAATATAACACCGAAAACCTAAACAAGGCCATAAATATCCTATTCATTGCACGTTTCATGTTATTCACCCCAAAAAATCCGGTATATTTTTTTTTCATTCCTCTCCATACTGAAAATTACGTGTGTTTGATTAATTTGAGTATTTTGAAATTTTGGTAAGCCGCGAAAATGGATTTTTTGTAATTCAGCTCACAAAATAAGGTTTTTAAAGTGCACCAATACAGGTAAACACAACGGTATCAAAATGTGAGCGTCAATTTTTTTCACAAAACGTTATATAGTTCTCAGTTTGTGAATCTGATCAAAATGCTTTTGATTTGTTGAATCCTTTTTCAAAAATATCTTTCTTCTCATATTATTTTCAGAGTACAAT</canonical>
            <polymorphic>TTCAATCGAAAGGTAATTTCTCACCTGTCAACGTCTTCCGGAAGGTTGGAGTTGGTTGTTTGGAGAATGAGTAGGTCGTATTGCTTGGCCGGCTTGCTCATGTCGGGGAGTGAAGAGCGAAGAGCAGCTCCACCAGCAGATCGAGGACCTCCAGCGGTTCCGGATTCGGTGATGGAATCTGGAAAATTGATTATGTTGATATGTTTCATACATTATTCAAGTATTATTCCCTATTCAGTGGTGGGACCAAGCTGATTTTATTCTTCAACTTTTAAGATTTAGACCCCAGCCACTCTAAAATTTTTTTACCCTTTGAATGATTTGTCAATTTTTACATATGAGAAAATTTCGAGAAATCAAACTCAAGGGCAAAACTTTATGAATGTGGAGTAGCTACCGACAAAGCTACGTGGTCATAAAAGTAAGCCACAAATGATGATCTTTATGAGACTGGCGTTTGAGACATATATTTTAAAAAAATGGAAATTTGTATGGAATTRTTTCGGTTTTTAGGATGTTTTTTTGGCTCAGTTCTGAGATACACTCAAAAATAAAATCTATTCTTGATTTCTAATAGGTCTCTTTGATTTAGCTATTACAAACCACTTATTTTTGTCATTGTCACCAAAATATAACACCGAAAACCTAAACAAGGCCATAAATATCCTATTCATTGCACGTTTCATGTTATTCACCCCAAAAAATCCGGTATATTTTTTTTTCATTCCTCTCCATACTGAAAATTACGTGTGTTTGATTAATTTGAGTATTTTGAAATTTTGGTAAGCCGCGAAAATGGATTTTTTGTAATTCAGCTCACAAAATAAGGTTTTTAAAGTGCACCAATACAGGTAAACACAACGGTATCAAAATGTGAGCGTCAATTTTTTTCACAAAACGTTATATAGTTCTCAGTTTGTGAATCTGATCAAAATGCTTTTGATTTGTTGAATCCTTTTTCAAAAATATCTTTCTTCTCATATTATTTTCAGAGTACAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAAAGTAAGCCACAAATGATG</pcr_primer_p1>
		<pcr_primer_p2>ATATTTATGGCCTTGTTTAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAAAAGTAAGCCACAAATGATGATCTTTATGAGACTGGCGTTTGAGACATATATTTTAAAAAAATGGAAATTTGTATGGAATTATTTCGGTTTTTAGGATGTTTTTTTGGCTCAGTTCTGAGATACACTCAAAAATAAAATCTATTCTTGATTTCTAATAGGTCTCTTTGATTTAGCTATTACAAACCACTTATTTTTGTCATTGTCACCAAAATATAACACCGAAAACCTAAACAAGGCCATAAATAT</canonical_amplicon>
		<polymorphic_amplicon>ATAAAAGTAAGCCACAAATGATGATCTTTATGAGACTGGCGTTTGAGACATATATTTTAAAAAAATGGAAATTTGTATGGAATTRTTTCGGTTTTTAGGATGTTTTTTTGGCTCAGTTCTGAGATACACTCAAAAATAAAATCTATTCTTGATTTCTAATAGGTCTCTTTGATTTAGCTATTACAAACCACTTATTTTTGTCATTGTCACCAAAATATAACACCGAAAACCTAAACAAGGCCATAAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14728</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>452922</contig_pos>
        <strand>+</strand>
        <context>TAAAATTTTT[A/T]TACCCTTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTATTCTTCAACTTTTAAGATTTAGACCCCAGCCACTCTAAAATTTTT</left_flank>
        <right_flank>TACCCTTTGAATGATTTGTCAATTTTTACATATGAGAAAATTTCGAGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGGTTTCAAAATGAAACAAGAGTTAGAAAAGTTTGTGCTTTCGCTTCAAATTGATCCTCTTCCACTCGGGCAACTTGTAGAATTCAATTAAGGACATCTTGAAGATATCCTCGAATGATCGCGTGGCAGATGTCGTTCCAAATGTTGTCTGCAAAAAAAGGGAGTCATGTCAAGCTAAACGTCAGATGCATATTCAATCGAAAGGTAATTTCTCACCTGTCAACGTCTTCCGGAAGGTTGGAGTTGGTTGTTTGGAGAATGAGTAGGTCGTATTGCTTGGCCGGCTTGCTCATGTCGGGGAGTGAAGAGCGAAGAGCAGCTCCACCAGCAGATCGAGGACCTCCAGCGGTTCCGGATTCGGTGATGGAATCTGGAAAATTGATTATGTTGATATGTTTCATACATTATTCAAGTATTATTCCCTATTCAGTGGTGGGACCAAGCTGATTTTATTCTTCAACTTTTAAGATTTAGACCCCAGCCACTCTAAAATTTTTTTACCCTTTGAATGATTTGTCAATTTTTACATATGAGAAAATTTCGAGAAATCAAACTCAAGGGCAAAACTTTATGAATGTGGAGTAGCTACCGACAAAGCTACGTGGTCATAAAAGTAAGCCACAAATGATGATCTTTATGAGACTGGCGTTTGAGACATATATTTTAAAAAAATGGAAATTTGTATGGAATTATTTCGGTTTTTAGGATGTTTTTTTGGCTCAGTTCTGAGATACACTCAAAAATAAAATCTATTCTTGATTTCTAATAGGTCTCTTTGATTTAGCTATTACAAACCACTTATTTTTGTCATTGTCACCAAAATATAACACCGAAAACCTAAACAAGGCCATAAATATCCTATTCATTGCACGTTTCATGTTATTCACCCCAAAAAATCCGGTATATTTTTTTTTCATTCCTCTCCATACTGAAAATTACGTGTGTTTGATTAATTTGAGTATTTTGAAATTTTGGTAAGCCGCGAAAATGGATTTTTT</canonical>
            <polymorphic>AGAGGTTTCAAAATGAAACAAGAGTTAGAAAAGTTTGTGCTTTCGCTTCAAATTGATCCTCTTCCACTCGGGCAACTTGTAGAATTCAATTAAGGACATCTTGAAGATATCCTCGAATGATCGCGTGGCAGATGTCGTTCCAAATGTTGTCTGCAAAAAAAGGGAGTCATGTCAAGCTAAACGTCAGATGCATATTCAATCGAAAGGTAATTTCTCACCTGTCAACGTCTTCCGGAAGGTTGGAGTTGGTTGTTTGGAGAATGAGTAGGTCGTATTGCTTGGCCGGCTTGCTCATGTCGGGGAGTGAAGAGCGAAGAGCAGCTCCACCAGCAGATCGAGGACCTCCAGCGGTTCCGGATTCGGTGATGGAATCTGGAAAATTGATTATGTTGATATGTTTCATACATTATTCAAGTATTATTCCCTATTCAGTGGTGGGACCAAGCTGATTTTATTCTTCAACTTTTAAGATTTAGACCCCAGCCACTCTAAAATTTTTWTACCCTTTGAATGATTTGTCAATTTTTACATATGAGAAAATTTCGAGAAATCAAACTCAAGGGCAAAACTTTATGAATGTGGAGTAGCTACCGACAAAGCTACGTGGTCATAAAAGTAAGCCACAAATGATGATCTTTATGAGACTGGCGTTTGAGACATATATTTTAAAAAAATGGAAATTTGTATGGAATTATTTCGGTTTTTAGGATGTTTTTTTGGCTCAGTTCTGAGATACACTCAAAAATAAAATCTATTCTTGATTTCTAATAGGTCTCTTTGATTTAGCTATTACAAACCACTTATTTTTGTCATTGTCACCAAAATATAACACCGAAAACCTAAACAAGGCCATAAATATCCTATTCATTGCACGTTTCATGTTATTCACCCCAAAAAATCCGGTATATTTTTTTTTCATTCCTCTCCATACTGAAAATTACGTGTGTTTGATTAATTTGAGTATTTTGAAATTTTGGTAAGCCGCGAAAATGGATTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTGATTTTATTCTTCAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>AATTCCATACAAATTTCCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCTGATTTTATTCTTCAACTTTTAAGATTTAGACCCCAGCCACTCTAAAATTTTTTTACCCTTTGAATGATTTGTCAATTTTTACATATGAGAAAATTTCGAGAAATCAAACTCAAGGGCAAAACTTTATGAATGTGGAGTAGCTACCGACAAAGCTACGTGGTCATAAAAGTAAGCCACAAATGATGATCTTTATGAGACTGGCGTTTGAGACATATATTTTAAAAAAATGGAAATTTGTATGGAATT</canonical_amplicon>
		<polymorphic_amplicon>AGCTGATTTTATTCTTCAACTTTTAAGATTTAGACCCCAGCCACTCTAAAATTTTTWTACCCTTTGAATGATTTGTCAATTTTTACATATGAGAAAATTTCGAGAAATCAAACTCAAGGGCAAAACTTTATGAATGTGGAGTAGCTACCGACAAAGCTACGTGGTCATAAAAGTAAGCCACAAATGATGATCTTTATGAGACTGGCGTTTGAGACATATATTTTAAAAAAATGGAAATTTGTATGGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14729</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>452848</contig_pos>
        <strand>+</strand>
        <context>TATTATTCCC[C/T]ATTCAGTGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAATTGATTATGTTGATATGTTTCATACATTATTCAAGTATTATTCCC</left_flank>
        <right_flank>ATTCAGTGGTGGGACCAAGCTGATTTTATTCTTCAACTTTTAAGATTTAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGGCAGTAGAAGGAGAGAAAAAGAGAGTATAGGAGAAGTTGAGTGATGAAGAAGAAAACAAATTTCAACCTAGAGAGGTTTCAAAATGAAACAAGAGTTAGAAAAGTTTGTGCTTTCGCTTCAAATTGATCCTCTTCCACTCGGGCAACTTGTAGAATTCAATTAAGGACATCTTGAAGATATCCTCGAATGATCGCGTGGCAGATGTCGTTCCAAATGTTGTCTGCAAAAAAAGGGAGTCATGTCAAGCTAAACGTCAGATGCATATTCAATCGAAAGGTAATTTCTCACCTGTCAACGTCTTCCGGAAGGTTGGAGTTGGTTGTTTGGAGAATGAGTAGGTCGTATTGCTTGGCCGGCTTGCTCATGTCGGGGAGTGAAGAGCGAAGAGCAGCTCCACCAGCAGATCGAGGACCTCCAGCGGTTCCGGATTCGGTGATGGAATCTGGAAAATTGATTATGTTGATATGTTTCATACATTATTCAAGTATTATTCCCTATTCAGTGGTGGGACCAAGCTGATTTTATTCTTCAACTTTTAAGATTTAGACCCCAGCCACTCTAAAATTTTTTTACCCTTTGAATGATTTGTCAATTTTTACATATGAGAAAATTTCGAGAAATCAAACTCAAGGGCAAAACTTTATGAATGTGGAGTAGCTACCGACAAAGCTACGTGGTCATAAAAGTAAGCCACAAATGATGATCTTTATGAGACTGGCGTTTGAGACATATATTTTAAAAAAATGGAAATTTGTATGGAATTATTTCGGTTTTTAGGATGTTTTTTTGGCTCAGTTCTGAGATACACTCAAAAATAAAATCTATTCTTGATTTCTAATAGGTCTCTTTGATTTAGCTATTACAAACCACTTATTTTTGTCATTGTCACCAAAATATAACACCGAAAACCTAAACAAGGCCATAAATATCCTATTCATTGCACGTTTCATGTTATTCACCCCAAAAAATCCGGTATATTTTTTTTTCATTCCTCTC</canonical>
            <polymorphic>GGGGCAGTAGAAGGAGAGAAAAAGAGAGTATAGGAGAAGTTGAGTGATGAAGAAGAAAACAAATTTCAACCTAGAGAGGTTTCAAAATGAAACAAGAGTTAGAAAAGTTTGTGCTTTCGCTTCAAATTGATCCTCTTCCACTCGGGCAACTTGTAGAATTCAATTAAGGACATCTTGAAGATATCCTCGAATGATCGCGTGGCAGATGTCGTTCCAAATGTTGTCTGCAAAAAAAGGGAGTCATGTCAAGCTAAACGTCAGATGCATATTCAATCGAAAGGTAATTTCTCACCTGTCAACGTCTTCCGGAAGGTTGGAGTTGGTTGTTTGGAGAATGAGTAGGTCGTATTGCTTGGCCGGCTTGCTCATGTCGGGGAGTGAAGAGCGAAGAGCAGCTCCACCAGCAGATCGAGGACCTCCAGCGGTTCCGGATTCGGTGATGGAATCTGGAAAATTGATTATGTTGATATGTTTCATACATTATTCAAGTATTATTCCCYATTCAGTGGTGGGACCAAGCTGATTTTATTCTTCAACTTTTAAGATTTAGACCCCAGCCACTCTAAAATTTTTTTACCCTTTGAATGATTTGTCAATTTTTACATATGAGAAAATTTCGAGAAATCAAACTCAAGGGCAAAACTTTATGAATGTGGAGTAGCTACCGACAAAGCTACGTGGTCATAAAAGTAAGCCACAAATGATGATCTTTATGAGACTGGCGTTTGAGACATATATTTTAAAAAAATGGAAATTTGTATGGAATTATTTCGGTTTTTAGGATGTTTTTTTGGCTCAGTTCTGAGATACACTCAAAAATAAAATCTATTCTTGATTTCTAATAGGTCTCTTTGATTTAGCTATTACAAACCACTTATTTTTGTCATTGTCACCAAAATATAACACCGAAAACCTAAACAAGGCCATAAATATCCTATTCATTGCACGTTTCATGTTATTCACCCCAAAAAATCCGGTATATTTTTTTTTCATTCCTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGGAAAATTGATTATGTTGAT</pcr_primer_p1>
		<pcr_primer_p2>GGCTTACTTTTATGACCACGTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTGGAAAATTGATTATGTTGATATGTTTCATACATTATTCAAGTATTATTCCCTATTCAGTGGTGGGACCAAGCTGATTTTATTCTTCAACTTTTAAGATTTAGACCCCAGCCACTCTAAAATTTTTTTACCCTTTGAATGATTTGTCAATTTTTACATATGAGAAAATTTCGAGAAATCAAACTCAAGGGCAAAACTTTATGAATGTGGAGTAGCTACCGACAAAGCTACGTGGTCATAAAAGTAAGCC</canonical_amplicon>
		<polymorphic_amplicon>TCTGGAAAATTGATTATGTTGATATGTTTCATACATTATTCAAGTATTATTCCCYATTCAGTGGTGGGACCAAGCTGATTTTATTCTTCAACTTTTAAGATTTAGACCCCAGCCACTCTAAAATTTTTTTACCCTTTGAATGATTTGTCAATTTTTACATATGAGAAAATTTCGAGAAATCAAACTCAAGGGCAAAACTTTATGAATGTGGAGTAGCTACCGACAAAGCTACGTGGTCATAAAAGTAAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14730</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>526850</contig_pos>
        <strand></strand>
        <context>TAAATAAAAA[A/G]AACTTGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCTAGCCCTGCTTCATACATGATTTGTGAAATCAAAAAATAAATAAAAA</left_flank>
        <right_flank>AACTTGAAAAACTCACCGGATAACCATCTCTCCTCAGACGATTTCCAAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGAGCTTTGAGAATTGGCACGTCCTGTAAGAAAAATGAACTAATGATGTCTAATTTTTTCATATTTTGTAGCAGGGCTGGGATTTACCGTATTTCCTTTAAGCCTATGGGCTTCAATAAGATTTTCCGGCCATTTCGACTTTATACTATTACCTAGTCTTTTTTTTTAGTCTGGGGCTCGGCTGTCGAGTTTATAATAAATTTGAAAATTTTGGGGGAGGGGGGGGGGGGGGTGTAAAACAGACCTAGTTTAAAAAACTAGCACATGCAAAATTATTTGAAAGATCCTAGTTTTCTAGCTGTTCGAAATTTTCGAACAGCACCTCTTTTTATCCCGTTTTTGTAAATCGTGAAAAACAAATGTTTAGCGAGTTTCGCGGAATTACGAATTTACAGAATTTCCGATCTATCAATTTTACGTTTCACGGGTTCCGTAAACATATTTTACGTCTAGCCCTGCTTCATACATGATTTGTGAAATCAAAAAATAAATAAAAAAAACTTGAAAAACTCACCGGATAACCATCTCTCCTCAGACGATTTCCAAGAGAATTCAGCACTTTTCGTTTCCGGAAGGATTTGAACGAAGACTGCTCCCCCAAGTGTCGAGATAGTTCTTCGAACAACATGAAACCCAAGGCTGGTGAGTATTCTGAAAAATAAAAATTAGGGTTGCACTTGAATTATGCACAAGTTTTACCTTGACCCTCGTATCCATCGTAGAAGAATTTCTCAACGTAGTTGAACAAGAGAATCCAGTATCGGCCTGTCTTTTCCGAATTTTTGCTAGACATTTTTGCTATTCTGAAAACAAAATTTTTAGACTTTCGAAATGAATTATATCAAATCTTACCTCCAAGCGAGTGGAAAGTTCTCGATCGTATCAAAGTTTCCTTTAATTGCAATTGTTTTCTCTCGAGCAAAAAAAAACCAGAGACATCCAGTCGGAAGAACTGCCATTTGACCGGCACTAATTTCGATTCGGCTGAAGTCTCCGAA</canonical>
            <polymorphic>TTGGAGCTTTGAGAATTGGCACGTCCTGTAAGAAAAATGAACTAATGATGTCTAATTTTTTCATATTTTGTAGCAGGGCTGGGATTTACCGTATTTCCTTTAAGCCTATGGGCTTCAATAAGATTTTCCGGCCATTTCGACTTTATACTATTACCTAGTCTTTTTTTTTAGTCTGGGGCTCGGCTGTCGAGTTTATAATAAATTTGAAAATTTTGGGGGAGGGGGGGGGGGGGGTGTAAAACAGACCTAGTTTAAAAAACTAGCACATGCAAAATTATTTGAAAGATCCTAGTTTTCTAGCTGTTCGAAATTTTCGAACAGCACCTCTTTTTATCCCGTTTTTGTAAATCGTGAAAAACAAATGTTTAGCGAGTTTCGCGGAATTACGAATTTACAGAATTTCCGATCTATCAATTTTACGTTTCACGGGTTCCGTAAACATATTTTACGTCTAGCCCTGCTTCATACATGATTTGTGAAATCAAAAAATAAATAAAAARAACTTGAAAAACTCACCGGATAACCATCTCTCCTCAGACGATTTCCAAGAGAATTCAGCACTTTTCGTTTCCGGAAGGATTTGAACGAAGACTGCTCCCCCAAGTGTCGAGATAGTTCTTCGAACAACATGAAACCCAAGGCTGGTGAGTATTCTGAAAAATAAAAATTAGGGTTGCACTTGAATTATGCACAAGTTTTACCTTGACCCTCGTATCCATCGTAGAAGAATTTCTCAACGTAGTTGAACAAGAGAATCCAGTATCGGCCTGTCTTTTCCGAATTTTTGCTAGACATTTTTGCTATTCTGAAAACAAAATTTTTAGACTTTCGAAATGAATTATATCAAATCTTACCTCCAAGCGAGTGGAAAGTTCTCGATCGTATCAAAGTTTCCTTTAATTGCAATTGTTTTCTCTCGAGCAAAAAAAAACCAGAGACATCCAGTCGGAAGAACTGCCATTTGACCGGCACTAATTTCGATTCGGCTGAAGTCTCCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGAATTACGAATTTACAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TTCGAAGAACTATCTCGACACT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CGGAATTACGAATTTACAGAATTTCCGATCTATCAATTTTACGTTTCACGGGTTCCGTAAACATATTTTACGTCTAGCCCTGCTTCATACATGATTTGTGAAATCAAAAAATAAATAAAAAAAACTTGAAAAACTCACCGGATAACCATCTCTCCTCAGACGATTTCCAAGAGAATTCAGCACTTTTCGTTTCCGGAAGGATTTGAACGAAGACTGCTCCCCCAAGTGTCGAGATAGTTCTTCGAA</canonical_amplicon>
		<polymorphic_amplicon>CGGAATTACGAATTTACAGAATTTCCGATCTATCAATTTTACGTTTCACGGGTTCCGTAAACATATTTTACGTCTAGCCCTGCTTCATACATGATTTGTGAAATCAAAAAATAAATAAAAARAACTTGAAAAACTCACCGGATAACCATCTCTCCTCAGACGATTTCCAAGAGAATTCAGCACTTTTCGTTTCCGGAAGGATTTGAACGAAGACTGCTCCCCCAAGTGTCGAGATAGTTCTTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14731</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>150466</contig_pos>
        <strand>+</strand>
        <context>GTTTTCTTTT[A/G]AATTTTGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAGCGCGTTTCAAAACCAACCCAAAAAGGGGAGAGACTCGTTTTCTTTT</left_flank>
        <right_flank>AATTTTGAAAATAAGAGGAAGAGAAAGAGCTGTGAGGAATTCGAAAAAGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAATTGTTAAAACTAATTAGCTGATATGTAAGGCTTGAAATGTGAGGAAGAACTTCTTCCGAAAAATCAAATTTCAAAAACTCCCAAAATTCTTTTCCTTCTTTTCCCGGATGATTTTTGTTCCTGCACTTCTTCACAGCCTTCTTCTCCTAATCCCACTTCTAATTTCGCTATTCTCCCCCAAAACGTCTTCTAATCGCCTCTGGGTGTAGTCTTCTTTTCTCGTAATTCCTTCTCAAAATGTATGTAAATATGTAGCCGTCCTTCTTCCATCTTTCTCTCCTCCATTTTTACTTCCCATATCAATCAATCCCTTCCACCTCGGCAAAAGTAGAGGACAATTTTTAATTAGAGGGTTTCACATTCTTTCCGACATAGTTACAATGTGGATATATAGAAAAAGGGAATAGAGAAAAATAATGCGGCCTCTCGCCGACTGACTTGCTCATTAGCGCGTTTCAAAACCAACCCAAAAAGGGGAGAGACTCGTTTTCTTTTGAATTTTGAAAATAAGAGGAAGAGAAAGAGCTGTGAGGAATTCGAAAAAGAGACGTGAGAAAAAAAGAATGGAAGAAGAGAAGATCGAGTTACCGGATCTTTAATATTCTTCTTCTCCTTTTCTTCACTCTCACCCCCAAATATTTCAAAAGTCGTACGGTGACTAAGTGGGTCGGGGAGCCAAACGGTGCTCGTTGGCACTTGATGTCAAATCAGCTCGCAAATGTCTAAGTCTCTCCGAGAACATCCATCCTATCACTTTGAAATCTATTCACACTCACAAGAAAGACAACAAACAGCCGGTGGTTTTGCGCGCACTTTGGATCCGAGTCGACACGCGTCATATCATACGGTCAAATCGGAAGAAGAAGATGTGACACGGTGGTGTCAAGGGTGAGATTCCACATTTTGATAGGTGTGAAAAGAGGAAAATTCAGAAGAAAATGTTATTTTTACAAGATAAGGTGGACCAACTAATCAGACTTGGTTACCCTAACAACC</canonical>
            <polymorphic>GCAATTGTTAAAACTAATTAGCTGATATGTAAGGCTTGAAATGTGAGGAAGAACTTCTTCCGAAAAATCAAATTTCAAAAACTCCCAAAATTCTTTTCCTTCTTTTCCCGGATGATTTTTGTTCCTGCACTTCTTCACAGCCTTCTTCTCCTAATCCCACTTCTAATTTCGCTATTCTCCCCCAAAACGTCTTCTAATCGCCTCTGGGTGTAGTCTTCTTTTCTCGTAATTCCTTCTCAAAATGTATGTAAATATGTAGCCGTCCTTCTTCCATCTTTCTCTCCTCCATTTTTACTTCCCATATCAATCAATCCCTTCCACCTCGGCAAAAGTAGAGGACAATTTTTAATTAGAGGGTTTCACATTCTTTCCGACATAGTTACAATGTGGATATATAGAAAAAGGGAATAGAGAAAAATAATGCGGCCTCTCGCCGACTGACTTGCTCATTAGCGCGTTTCAAAACCAACCCAAAAAGGGGAGAGACTCGTTTTCTTTTRAATTTTGAAAATAAGAGGAAGAGAAAGAGCTGTGAGGAATTCGAAAAAGAGACGTGAGAAAAAAAGAATGGAAGAAGAGAAGATCGAGTTACCGGATCTTTAATATTCTTCTTCTCCTTTTCTTCACTCTCACCCCCAAATATTTCAAAAGTCGTACGGTGACTAAGTGGGTCGGGGAGCCAAACGGTGCTCGTTGGCACTTGATGTCAAATCAGCTCGCAAATGTCTAAGTCTCTCCGAGAACATCCATCCTATCACTTTGAAATCTATTCACACTCACAAGAAAGACAACAAACAGCCGGTGGTTTTGCGCGCACTTTGGATCCGAGTCGACACGCGTCATATCATACGGTCAAATCGGAAGAAGAAGATGTGACACGGTGGTGTCAAGGGTGAGATTCCACATTTTGATAGGTGTGAAAAGAGGAAAATTCAGAAGAAAATGTTATTTTTACAAGATAAGGTGGACCAACTAATCAGACTTGGTTACCCTAACAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>412 392 71 70 37 18</canonical_bands>
                <polymorphic_bands>449 392 71 70 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTAGAGGGTTTCACATTCTTT</pcr_primer_p1>
		<pcr_primer_p2>GGTAACTCGATCTTCTCTTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATTAGAGGGTTTCACATTCTTTCCGACATAGTTACAATGTGGATATATAGAAAAAGGGAATAGAGAAAAATAATGCGGCCTCTCGCCGACTGACTTGCTCATTAGCGCGTTTCAAAACCAACCCAAAAAGGGGAGAGACTCGTTTTCTTTTGAATTTTGAAAATAAGAGGAAGAGAAAGAGCTGTGAGGAATTCGAAAAAGAGACGTGAGAAAAAAAGAATGGAAGAAGAGAAGATCGAGTTACC</canonical_amplicon>
		<polymorphic_amplicon>AATTAGAGGGTTTCACATTCTTTCCGACATAGTTACAATGTGGATATATAGAAAAAGGGAATAGAGAAAAATAATGCGGCCTCTCGCCGACTGACTTGCTCATTAGCGCGTTTCAAAACCAACCCAAAAAGGGGAGAGACTCGTTTTCTTTTRAATTTTGAAAATAAGAGGAAGAGAAAGAGCTGTGAGGAATTCGAAAAAGAGACGTGAGAAAAAAAGAATGGAAGAAGAGAAGATCGAGTTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14732</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>150527</contig_pos>
        <strand>+</strand>
        <context>GACGTGAGAA[A/G]AAAAGAATGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAAGAGGAAGAGAAAGAGCTGTGAGGAATTCGAAAAAGAGACGTGAGAA</left_flank>
        <right_flank>AAAAGAATGGAAGAAGAGAAGATCGAGTTACCGGATCTTTAATATTCTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAATCAAATTTCAAAAACTCCCAAAATTCTTTTCCTTCTTTTCCCGGATGATTTTTGTTCCTGCACTTCTTCACAGCCTTCTTCTCCTAATCCCACTTCTAATTTCGCTATTCTCCCCCAAAACGTCTTCTAATCGCCTCTGGGTGTAGTCTTCTTTTCTCGTAATTCCTTCTCAAAATGTATGTAAATATGTAGCCGTCCTTCTTCCATCTTTCTCTCCTCCATTTTTACTTCCCATATCAATCAATCCCTTCCACCTCGGCAAAAGTAGAGGACAATTTTTAATTAGAGGGTTTCACATTCTTTCCGACATAGTTACAATGTGGATATATAGAAAAAGGGAATAGAGAAAAATAATGCGGCCTCTCGCCGACTGACTTGCTCATTAGCGCGTTTCAAAACCAACCCAAAAAGGGGAGAGACTCGTTTTCTTTTGAATTTTGAAAATAAGAGGAAGAGAAAGAGCTGTGAGGAATTCGAAAAAGAGACGTGAGAAAAAAAGAATGGAAGAAGAGAAGATCGAGTTACCGGATCTTTAATATTCTTCTTCTCCTTTTCTTCACTCTCACCCCCAAATATTTCAAAAGTCGTACGGTGACTAAGTGGGTCGGGGAGCCAAACGGTGCTCGTTGGCACTTGATGTCAAATCAGCTCGCAAATGTCTAAGTCTCTCCGAGAACATCCATCCTATCACTTTGAAATCTATTCACACTCACAAGAAAGACAACAAACAGCCGGTGGTTTTGCGCGCACTTTGGATCCGAGTCGACACGCGTCATATCATACGGTCAAATCGGAAGAAGAAGATGTGACACGGTGGTGTCAAGGGTGAGATTCCACATTTTGATAGGTGTGAAAAGAGGAAAATTCAGAAGAAAATGTTATTTTTACAAGATAAGGTGGACCAACTAATCAGACTTGGTTACCCTAACAACCGCGGTTCCTATCAATCAGAAAGTCAGATTTCCAATAAGATTCAAACCAACTTGAGTGCAGC</canonical>
            <polymorphic>GAAAAATCAAATTTCAAAAACTCCCAAAATTCTTTTCCTTCTTTTCCCGGATGATTTTTGTTCCTGCACTTCTTCACAGCCTTCTTCTCCTAATCCCACTTCTAATTTCGCTATTCTCCCCCAAAACGTCTTCTAATCGCCTCTGGGTGTAGTCTTCTTTTCTCGTAATTCCTTCTCAAAATGTATGTAAATATGTAGCCGTCCTTCTTCCATCTTTCTCTCCTCCATTTTTACTTCCCATATCAATCAATCCCTTCCACCTCGGCAAAAGTAGAGGACAATTTTTAATTAGAGGGTTTCACATTCTTTCCGACATAGTTACAATGTGGATATATAGAAAAAGGGAATAGAGAAAAATAATGCGGCCTCTCGCCGACTGACTTGCTCATTAGCGCGTTTCAAAACCAACCCAAAAAGGGGAGAGACTCGTTTTCTTTTGAATTTTGAAAATAAGAGGAAGAGAAAGAGCTGTGAGGAATTCGAAAAAGAGACGTGAGAARAAAAGAATGGAAGAAGAGAAGATCGAGTTACCGGATCTTTAATATTCTTCTTCTCCTTTTCTTCACTCTCACCCCCAAATATTTCAAAAGTCGTACGGTGACTAAGTGGGTCGGGGAGCCAAACGGTGCTCGTTGGCACTTGATGTCAAATCAGCTCGCAAATGTCTAAGTCTCTCCGAGAACATCCATCCTATCACTTTGAAATCTATTCACACTCACAAGAAAGACAACAAACAGCCGGTGGTTTTGCGCGCACTTTGGATCCGAGTCGACACGCGTCATATCATACGGTCAAATCGGAAGAAGAAGATGTGACACGGTGGTGTCAAGGGTGAGATTCCACATTTTGATAGGTGTGAAAAGAGGAAAATTCAGAAGAAAATGTTATTTTTACAAGATAAGGTGGACCAACTAATCAGACTTGGTTACCCTAACAACCGCGGTTCCTATCAATCAGAAAGTCAGATTTCCAATAAGATTCAAACCAACTTGAGTGCAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAAAATAAGAGGAAGAGAA</pcr_primer_p1>
		<pcr_primer_p2>GATGTTCTCGGAGAGACTTAGAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAAAATAAGAGGAAGAGAAAGAGCTGTGAGGAATTCGAAAAAGAGACGTGAGAAAAAAAGAATGGAAGAAGAGAAGATCGAGTTACCGGATCTTTAATATTCTTCTTCTCCTTTTCTTCACTCTCACCCCCAAATATTTCAAAAGTCGTACGGTGACTAAGTGGGTCGGGGAGCCAAACGGTGCTCGTTGGCACTTGATGTCAAATCAGCTCGCAAATGTCTAAGTCTCTCCGAGAACATC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAAAATAAGAGGAAGAGAAAGAGCTGTGAGGAATTCGAAAAAGAGACGTGAGAARAAAAGAATGGAAGAAGAGAAGATCGAGTTACCGGATCTTTAATATTCTTCTTCTCCTTTTCTTCACTCTCACCCCCAAATATTTCAAAAGTCGTACGGTGACTAAGTGGGTCGGGGAGCCAAACGGTGCTCGTTGGCACTTGATGTCAAATCAGCTCGCAAATGTCTAAGTCTCTCCGAGAACATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14733</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>150821</contig_pos>
        <strand>+</strand>
        <context>TCATACGGTC[A/G]AATCGGAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTTGCGCGCACTTTGGATCCGAGTCGACACGCGTCATATCATACGGTC</left_flank>
        <right_flank>AATCGGAAGAAGAAGATGTGACACGGTGGTGTCAAGGGTGAGATTCCACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTTCACATTCTTTCCGACATAGTTACAATGTGGATATATAGAAAAAGGGAATAGAGAAAAATAATGCGGCCTCTCGCCGACTGACTTGCTCATTAGCGCGTTTCAAAACCAACCCAAAAAGGGGAGAGACTCGTTTTCTTTTGAATTTTGAAAATAAGAGGAAGAGAAAGAGCTGTGAGGAATTCGAAAAAGAGACGTGAGAAAAAAAGAATGGAAGAAGAGAAGATCGAGTTACCGGATCTTTAATATTCTTCTTCTCCTTTTCTTCACTCTCACCCCCAAATATTTCAAAAGTCGTACGGTGACTAAGTGGGTCGGGGAGCCAAACGGTGCTCGTTGGCACTTGATGTCAAATCAGCTCGCAAATGTCTAAGTCTCTCCGAGAACATCCATCCTATCACTTTGAAATCTATTCACACTCACAAGAAAGACAACAAACAGCCGGTGGTTTTGCGCGCACTTTGGATCCGAGTCGACACGCGTCATATCATACGGTCAAATCGGAAGAAGAAGATGTGACACGGTGGTGTCAAGGGTGAGATTCCACATTTTGATAGGTGTGAAAAGAGGAAAATTCAGAAGAAAATGTTATTTTTACAAGATAAGGTGGACCAACTAATCAGACTTGGTTACCCTAACAACCGCGGTTCCTATCAATCAGAAAGTCAGATTTCCAATAAGATTCAAACCAACTTGAGTGCAGCCAGCTGGTTTTAATATAATACACTCTGGCTTGTATTTGTATTCTCGTTTCCCCTCCGATTTACTTCATATATATTCAAACCTCTATTACCTCCTGTTGAGTTAAATGGTTTCTTTTTTCTTTTTTCAATCGGCGCGCGCCTTTTCTTACAATAATAAATTGGTAGCGCACGACGATTGGAAACAATGGATGAGATCGGAGATGAAGAACTATTCTAGGGTCCCCAATGGCCTTCGGAATGGAGAAGAATTCTTTTTCAAGTGTTGTCTCAAAATGATGACTTACAATTACAAAC</canonical>
            <polymorphic>GGTTTCACATTCTTTCCGACATAGTTACAATGTGGATATATAGAAAAAGGGAATAGAGAAAAATAATGCGGCCTCTCGCCGACTGACTTGCTCATTAGCGCGTTTCAAAACCAACCCAAAAAGGGGAGAGACTCGTTTTCTTTTGAATTTTGAAAATAAGAGGAAGAGAAAGAGCTGTGAGGAATTCGAAAAAGAGACGTGAGAAAAAAAGAATGGAAGAAGAGAAGATCGAGTTACCGGATCTTTAATATTCTTCTTCTCCTTTTCTTCACTCTCACCCCCAAATATTTCAAAAGTCGTACGGTGACTAAGTGGGTCGGGGAGCCAAACGGTGCTCGTTGGCACTTGATGTCAAATCAGCTCGCAAATGTCTAAGTCTCTCCGAGAACATCCATCCTATCACTTTGAAATCTATTCACACTCACAAGAAAGACAACAAACAGCCGGTGGTTTTGCGCGCACTTTGGATCCGAGTCGACACGCGTCATATCATACGGTCRAATCGGAAGAAGAAGATGTGACACGGTGGTGTCAAGGGTGAGATTCCACATTTTGATAGGTGTGAAAAGAGGAAAATTCAGAAGAAAATGTTATTTTTACAAGATAAGGTGGACCAACTAATCAGACTTGGTTACCCTAACAACCGCGGTTCCTATCAATCAGAAAGTCAGATTTCCAATAAGATTCAAACCAACTTGAGTGCAGCCAGCTGGTTTTAATATAATACACTCTGGCTTGTATTTGTATTCTCGTTTCCCCTCCGATTTACTTCATATATATTCAAACCTCTATTACCTCCTGTTGAGTTAAATGGTTTCTTTTTTCTTTTTTCAATCGGCGCGCGCCTTTTCTTACAATAATAAATTGGTAGCGCACGACGATTGGAAACAATGGATGAGATCGGAGATGAAGAACTATTCTAGGGTCCCCAATGGCCTTCGGAATGGAGAAGAATTCTTTTTCAAGTGTTGTCTCAAAATGATGACTTACAATTACAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATCCTATCACTTTGAAATCTA</pcr_primer_p1>
		<pcr_primer_p2>TAACCAAGTCTGATTAGTTGGTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CCATCCTATCACTTTGAAATCTATTCACACTCACAAGAAAGACAACAAACAGCCGGTGGTTTTGCGCGCACTTTGGATCCGAGTCGACACGCGTCATATCATACGGTCAAATCGGAAGAAGAAGATGTGACACGGTGGTGTCAAGGGTGAGATTCCACATTTTGATAGGTGTGAAAAGAGGAAAATTCAGAAGAAAATGTTATTTTTACAAGATAAGGTGGACCAACTAATCAGACTTGGTTA</canonical_amplicon>
		<polymorphic_amplicon>CCATCCTATCACTTTGAAATCTATTCACACTCACAAGAAAGACAACAAACAGCCGGTGGTTTTGCGCGCACTTTGGATCCGAGTCGACACGCGTCATATCATACGGTCRAATCGGAAGAAGAAGATGTGACACGGTGGTGTCAAGGGTGAGATTCCACATTTTGATAGGTGTGAAAAGAGGAAAATTCAGAAGAAAATGTTATTTTTACAAGATAAGGTGGACCAACTAATCAGACTTGGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14734</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>152130</contig_pos>
        <strand>+</strand>
        <context>TCTGACGTCA[A/T]ACTCGTGAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGCGCTGTTGTTATGGAGGAGTTATAAAGACACTACCATCTCTGACGTCA</left_flank>
        <right_flank>ACTCGTGAGCCATGTGTCAAAGAAATTTCGAAACCTCGAAACATAGATAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGGAAAAGAGTATAAAACTCGAAAATTACACAGATTATCATGTCAGTAACATTGATAACATCACGGTTGAGAAAGCATTTGAAGAAGAAGATTGGCCTTTTGTAATGCTTACAAACAAAAAATATGACAAAGAGCTTGAAAAGGAAACCGACACAATAGGAGTAGAAAAAAGGACCGAAGAGAATAATAGAACTGGCAGAATATTGCATTTTTAGAGCGAGAAAAGCTTTTTCAGTTTCAAATATTTAAAACCTAGTTTTAGAATAATCTAAAAAATTCCAAAAACAAAGAGGAGAGAAGGGACATGTAAATAGACGCAACTGAAAAAGTTGTTTTTGGATAGTAACTTTTATAGTCTCGAATATTCCCACGACATTCCGCGAGCCTAGTCTTCAATTTCCTCCGGTTTATCACCAAATCATAAGATGCGTGGGAAACTATATAGATGGCGCTGTTGTTATGGAGGAGTTATAAAGACACTACCATCTCTGACGTCATACTCGTGAGCCATGTGTCAAAGAAATTTCGAAACCTCGAAACATAGATAGATGGGGTACAGTAACCTTCTAGAAGTATAAGCCGTAACGAATCAATAAACACAAAAAGAAAAATGAGTCACAACTCGAAAGGCGCCCTTCCCGCAAAAATGGGCGGAGTCAATGTTTCGGAATGGGCGGGGAGCGATGTTTGCGAGGGAAGTGAGGGACGGGTGGTGGTGGACATACTCTACGACACTGCGGGAGATTTTGAGTCGATAACGGAAGGAAATAGTCGGCCAGAAAGAGAGATTCAGATCATTTACTAACCATTTGTTGTCTTCAATTTTTTCTGAAGGGTGACGGTGCCACTGTAAGAAAGTTTCTGATCGTTTGTGAGTCATTGAATTTGTTTCTAGATATTGTTGTTGCTCAATGACGTCAGCTATTTTTCCATGAAATCGATTCTTAAATCATAAGGTTTCCTATAAAGATGAATTGAATATACTGTTGATTACTGTA</canonical>
            <polymorphic>AAAGGAAAAGAGTATAAAACTCGAAAATTACACAGATTATCATGTCAGTAACATTGATAACATCACGGTTGAGAAAGCATTTGAAGAAGAAGATTGGCCTTTTGTAATGCTTACAAACAAAAAATATGACAAAGAGCTTGAAAAGGAAACCGACACAATAGGAGTAGAAAAAAGGACCGAAGAGAATAATAGAACTGGCAGAATATTGCATTTTTAGAGCGAGAAAAGCTTTTTCAGTTTCAAATATTTAAAACCTAGTTTTAGAATAATCTAAAAAATTCCAAAAACAAAGAGGAGAGAAGGGACATGTAAATAGACGCAACTGAAAAAGTTGTTTTTGGATAGTAACTTTTATAGTCTCGAATATTCCCACGACATTCCGCGAGCCTAGTCTTCAATTTCCTCCGGTTTATCACCAAATCATAAGATGCGTGGGAAACTATATAGATGGCGCTGTTGTTATGGAGGAGTTATAAAGACACTACCATCTCTGACGTCAWACTCGTGAGCCATGTGTCAAAGAAATTTCGAAACCTCGAAACATAGATAGATGGGGTACAGTAACCTTCTAGAAGTATAAGCCGTAACGAATCAATAAACACAAAAAGAAAAATGAGTCACAACTCGAAAGGCGCCCTTCCCGCAAAAATGGGCGGAGTCAATGTTTCGGAATGGGCGGGGAGCGATGTTTGCGAGGGAAGTGAGGGACGGGTGGTGGTGGACATACTCTACGACACTGCGGGAGATTTTGAGTCGATAACGGAAGGAAATAGTCGGCCAGAAAGAGAGATTCAGATCATTTACTAACCATTTGTTGTCTTCAATTTTTTCTGAAGGGTGACGGTGCCACTGTAAGAAAGTTTCTGATCGTTTGTGAGTCATTGAATTTGTTTCTAGATATTGTTGTTGCTCAATGACGTCAGCTATTTTTCCATGAAATCGATTCTTAAATCATAAGGTTTCCTATAAAGATGAATTGAATATACTGTTGATTACTGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTGAAAAAGTTGTTTTTGGATA</pcr_primer_p1>
		<pcr_primer_p2>GAAGGTTACTGTACCCCATCTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACTGAAAAAGTTGTTTTTGGATAGTAACTTTTATAGTCTCGAATATTCCCACGACATTCCGCGAGCCTAGTCTTCAATTTCCTCCGGTTTATCACCAAATCATAAGATGCGTGGGAAACTATATAGATGGCGCTGTTGTTATGGAGGAGTTATAAAGACACTACCATCTCTGACGTCATACTCGTGAGCCATGTGTCAAAGAAATTTCGAAACCTCGAAACATAGATAGATGGGGTACAGTAACCTTC</canonical_amplicon>
		<polymorphic_amplicon>ACTGAAAAAGTTGTTTTTGGATAGTAACTTTTATAGTCTCGAATATTCCCACGACATTCCGCGAGCCTAGTCTTCAATTTCCTCCGGTTTATCACCAAATCATAAGATGCGTGGGAAACTATATAGATGGCGCTGTTGTTATGGAGGAGTTATAAAGACACTACCATCTCTGACGTCAWACTCGTGAGCCATGTGTCAAAGAAATTTCGAAACCTCGAAACATAGATAGATGGGGTACAGTAACCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14735</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>152056</contig_pos>
        <strand>+</strand>
        <context>CCAAATCATA[A/G]GATGCGTGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTCCGCGAGCCTAGTCTTCAATTTCCTCCGGTTTATCACCAAATCATA</left_flank>
        <right_flank>GATGCGTGGGAAACTATATAGATGGCGCTGTTGTTATGGAGGAGTTATAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATCCCTGGAGAAACTCCTCACATCAAGTCAATAAGAAAATTAGAGAGTAAGAGAAACACAAGAAGAAGAGAAAAGGAAAAGAGTATAAAACTCGAAAATTACACAGATTATCATGTCAGTAACATTGATAACATCACGGTTGAGAAAGCATTTGAAGAAGAAGATTGGCCTTTTGTAATGCTTACAAACAAAAAATATGACAAAGAGCTTGAAAAGGAAACCGACACAATAGGAGTAGAAAAAAGGACCGAAGAGAATAATAGAACTGGCAGAATATTGCATTTTTAGAGCGAGAAAAGCTTTTTCAGTTTCAAATATTTAAAACCTAGTTTTAGAATAATCTAAAAAATTCCAAAAACAAAGAGGAGAGAAGGGACATGTAAATAGACGCAACTGAAAAAGTTGTTTTTGGATAGTAACTTTTATAGTCTCGAATATTCCCACGACATTCCGCGAGCCTAGTCTTCAATTTCCTCCGGTTTATCACCAAATCATAAGATGCGTGGGAAACTATATAGATGGCGCTGTTGTTATGGAGGAGTTATAAAGACACTACCATCTCTGACGTCATACTCGTGAGCCATGTGTCAAAGAAATTTCGAAACCTCGAAACATAGATAGATGGGGTACAGTAACCTTCTAGAAGTATAAGCCGTAACGAATCAATAAACACAAAAAGAAAAATGAGTCACAACTCGAAAGGCGCCCTTCCCGCAAAAATGGGCGGAGTCAATGTTTCGGAATGGGCGGGGAGCGATGTTTGCGAGGGAAGTGAGGGACGGGTGGTGGTGGACATACTCTACGACACTGCGGGAGATTTTGAGTCGATAACGGAAGGAAATAGTCGGCCAGAAAGAGAGATTCAGATCATTTACTAACCATTTGTTGTCTTCAATTTTTTCTGAAGGGTGACGGTGCCACTGTAAGAAAGTTTCTGATCGTTTGTGAGTCATTGAATTTGTTTCTAGATATTGTTGTTGCTCAATGACGTCAGCTA</canonical>
            <polymorphic>AGAATCCCTGGAGAAACTCCTCACATCAAGTCAATAAGAAAATTAGAGAGTAAGAGAAACACAAGAAGAAGAGAAAAGGAAAAGAGTATAAAACTCGAAAATTACACAGATTATCATGTCAGTAACATTGATAACATCACGGTTGAGAAAGCATTTGAAGAAGAAGATTGGCCTTTTGTAATGCTTACAAACAAAAAATATGACAAAGAGCTTGAAAAGGAAACCGACACAATAGGAGTAGAAAAAAGGACCGAAGAGAATAATAGAACTGGCAGAATATTGCATTTTTAGAGCGAGAAAAGCTTTTTCAGTTTCAAATATTTAAAACCTAGTTTTAGAATAATCTAAAAAATTCCAAAAACAAAGAGGAGAGAAGGGACATGTAAATAGACGCAACTGAAAAAGTTGTTTTTGGATAGTAACTTTTATAGTCTCGAATATTCCCACGACATTCCGCGAGCCTAGTCTTCAATTTCCTCCGGTTTATCACCAAATCATARGATGCGTGGGAAACTATATAGATGGCGCTGTTGTTATGGAGGAGTTATAAAGACACTACCATCTCTGACGTCATACTCGTGAGCCATGTGTCAAAGAAATTTCGAAACCTCGAAACATAGATAGATGGGGTACAGTAACCTTCTAGAAGTATAAGCCGTAACGAATCAATAAACACAAAAAGAAAAATGAGTCACAACTCGAAAGGCGCCCTTCCCGCAAAAATGGGCGGAGTCAATGTTTCGGAATGGGCGGGGAGCGATGTTTGCGAGGGAAGTGAGGGACGGGTGGTGGTGGACATACTCTACGACACTGCGGGAGATTTTGAGTCGATAACGGAAGGAAATAGTCGGCCAGAAAGAGAGATTCAGATCATTTACTAACCATTTGTTGTCTTCAATTTTTTCTGAAGGGTGACGGTGCCACTGTAAGAAAGTTTCTGATCGTTTGTGAGTCATTGAATTTGTTTCTAGATATTGTTGTTGCTCAATGACGTCAGCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTGAAAAAGTTGTTTTTGGATA</pcr_primer_p1>
		<pcr_primer_p2>GAAGGTTACTGTACCCCATCTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACTGAAAAAGTTGTTTTTGGATAGTAACTTTTATAGTCTCGAATATTCCCACGACATTCCGCGAGCCTAGTCTTCAATTTCCTCCGGTTTATCACCAAATCATAAGATGCGTGGGAAACTATATAGATGGCGCTGTTGTTATGGAGGAGTTATAAAGACACTACCATCTCTGACGTCATACTCGTGAGCCATGTGTCAAAGAAATTTCGAAACCTCGAAACATAGATAGATGGGGTACAGTAACCTTC</canonical_amplicon>
		<polymorphic_amplicon>ACTGAAAAAGTTGTTTTTGGATAGTAACTTTTATAGTCTCGAATATTCCCACGACATTCCGCGAGCCTAGTCTTCAATTTCCTCCGGTTTATCACCAAATCATARGATGCGTGGGAAACTATATAGATGGCGCTGTTGTTATGGAGGAGTTATAAAGACACTACCATCTCTGACGTCATACTCGTGAGCCATGTGTCAAAGAAATTTCGAAACCTCGAAACATAGATAGATGGGGTACAGTAACCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14736</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>151884</contig_pos>
        <strand>+</strand>
        <context>AYATTTAAAA[C/T]CTAGTTTTAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTGCATTTTTAGAGCGAGAAAAGCTTTTTCAGTTTCAAATATTTAAAA</left_flank>
        <right_flank>CTAGTTTTAGAATAATCTAAAAAATTCCAAAAACAAAGAGGAGAGAAGGG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTGGAACTGATGCCACGCGTAGTCTTCTAGAATCTGATCCACATCGACGTGGTTCATTTTCTGAAATCGGTAAAAATATTATACTAGTTAGAAACTAAAAACAGAGAAAGATCGAGAAAAATAAAGTGAAATAAAGCCAATCAGTGCTGGTTTAGCGGAGGAAAGAGAAGAGAATCCCTGGAGAAACTCCTCACATCAAGTCAATAAGAAAATTAGAGAGTAAGAGAAACACAAGAAGAAGAGAAAAGGAAAAGAGTATAAAACTCGAAAATTACACAGATTATCATGTCAGTAACATTGATAACATCACGGTTGAGAAAGCATTTGAAGAAGAAGATTGGCCTTTTGTAATGCTTACAAACAAAAAATATGACAAAGAGCTTGAAAAGGAAACCGACACAATAGGAGTAGAAAAAAGGACCGAAGAGAATAATAGAACTGGCAGAATATTGCATTTTTAGAGCGAGAAAAGCTTTTTCAGTTTCAAATATTTAAAACCTAGTTTTAGAATAATCTAAAAAATTCCAAAAACAAAGAGGAGAGAAGGGACATGTAAATAGACGCAACTGAAAAAGTTGTTTTTGGATAGTAACTTTTATAGTCTCGAATATTCCCACGACATTCCGCGAGCCTAGTCTTCAATTTCCTCCGGTTTATCACCAAATCATAAGATGCGTGGGAAACTATATAGATGGCGCTGTTGTTATGGAGGAGTTATAAAGACACTACCATCTCTGACGTCATACTCGTGAGCCATGTGTCAAAGAAATTTCGAAACCTCGAAACATAGATAGATGGGGTACAGTAACCTTCTAGAAGTATAAGCCGTAACGAATCAATAAACACAAAAAGAAAAATGAGTCACAACTCGAAAGGCGCCCTTCCCGCAAAAATGGGCGGAGTCAATGTTTCGGAATGGGCGGGGAGCGATGTTTGCGAGGGAAGTGAGGGACGGGTGGTGGTGGACATACTCTACGACACTGCGGGAGATTTTGAGT</canonical>
            <polymorphic>TCTTGGAACTGATGCCACGCGTAGTCTTCTAGAATCTGATCCACATCGACGTGGTTCATTTTCTGAAATCGGTAAAAATATTATACTAGTTAGAAACTAAAAACAGAGAAAGATCGAGAAAAATAAAGTGAAATAAAGCCAATCAGTGCTGGTTTAGCGGAGGAAAGAGAAGAGAATCCCTGGAGAAACTCCTCACATCAAGTCAATAAGAAAATTAGAGAGTAAGAGAAACACAAGAAGAAGAGAAAAGGAAAAGAGTATAAAACTCGAAAATTACACAGATTATCATGTCAGTAACATTGATAACATCACGGTTGAGAAAGCATTTGAAGAAGAAGATTGGCCTTTTGTAATGCTTACAAACAAAAAATATGACAAAGAGCTTGAAAAGGAAACCGACACAATAGGAGTAGAAAAAAGGACCGAAGAGAATAATAGAACTGGCAGAATATTGCATTTTTAGAGCGAGAAAAGCTTTTTCAGTTTCAAATATTTAAAAYCTAGTTTTAGAATAATCTAAAAAATTCCAAAAACAAAGAGGAGAGAAGGGACATGTAAATAGACGCAACTGAAAAAGTTGTTTTTGGATAGTAACTTTTATAGTCTCGAATATTCCCACGACATTCCGCGAGCCTAGTCTTCAATTTCCTCCGGTTTATCACCAAATCATAAGATGCGTGGGAAACTATATAGATGGCGCTGTTGTTATGGAGGAGTTATAAAGACACTACCATCTCTGACGTCATACTCGTGAGCCATGTGTCAAAGAAATTTCGAAACCTCGAAACATAGATAGATGGGGTACAGTAACCTTCTAGAAGTATAAGCCGTAACGAATCAATAAACACAAAAAGAAAAATGAGTCACAACTCGAAAGGCGCCCTTCCCGCAAAAATGGGCGGAGTCAATGTTTCGGAATGGGCGGGGAGCGATGTTTGCGAGGGAAGTGAGGGACGGGTGGTGGTGGACATACTCTACGACACTGCGGGAGATTTTGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATGACAAAGAGCTTGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TGGGAATATTCGAGACTATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATATGACAAAGAGCTTGAAAAGGAAACCGACACAATAGGAGTAGAAAAAAGGACCGAAGAGAATAATAGAACTGGCAGAATATTGCATTTTTAGAGCGAGAAAAGCTTTTTCAGTTTCAAATATTTAAAACCTAGTTTTAGAATAATCTAAAAAATTCCAAAAACAAAGAGGAGAGAAGGGACATGTAAATAGACGCAACTGAAAAAGTTGTTTTTGGATAGTAACTTTTATAGTCTCGAATATTCCCA</canonical_amplicon>
		<polymorphic_amplicon>AATATGACAAAGAGCTTGAAAAGGAAACCGACACAATAGGAGTAGAAAAAAGGACCGAAGAGAATAATAGAACTGGCAGAATATTGCATTTTTAGAGCGAGAAAAGCTTTTTCAGTTTCAAATATTTAAAAYCTAGTTTTAGAATAATCTAAAAAATTCCAAAAACAAAGAGGAGAGAAGGGACATGTAAATAGACGCAACTGAAAAAGTTGTTTTTGGATAGTAACTTTTATAGTCTCGAATATTCCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14737</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>151875</contig_pos>
        <strand>+</strand>
        <context>CAGTTTCAAA[C/T]ATTTAAAAYC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGGCAGAATATTGCATTTTTAGAGCGAGAAAAGCTTTTTCAGTTTCAAA</left_flank>
        <right_flank>ATTTAAAACCTAGTTTTAGAATAATCTAAAAAATTCCAAAAACAAAGAGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTGCACATCTTGGAACTGATGCCACGCGTAGTCTTCTAGAATCTGATCCACATCGACGTGGTTCATTTTCTGAAATCGGTAAAAATATTATACTAGTTAGAAACTAAAAACAGAGAAAGATCGAGAAAAATAAAGTGAAATAAAGCCAATCAGTGCTGGTTTAGCGGAGGAAAGAGAAGAGAATCCCTGGAGAAACTCCTCACATCAAGTCAATAAGAAAATTAGAGAGTAAGAGAAACACAAGAAGAAGAGAAAAGGAAAAGAGTATAAAACTCGAAAATTACACAGATTATCATGTCAGTAACATTGATAACATCACGGTTGAGAAAGCATTTGAAGAAGAAGATTGGCCTTTTGTAATGCTTACAAACAAAAAATATGACAAAGAGCTTGAAAAGGAAACCGACACAATAGGAGTAGAAAAAAGGACCGAAGAGAATAATAGAACTGGCAGAATATTGCATTTTTAGAGCGAGAAAAGCTTTTTCAGTTTCAAATATTTAAAACCTAGTTTTAGAATAATCTAAAAAATTCCAAAAACAAAGAGGAGAGAAGGGACATGTAAATAGACGCAACTGAAAAAGTTGTTTTTGGATAGTAACTTTTATAGTCTCGAATATTCCCACGACATTCCGCGAGCCTAGTCTTCAATTTCCTCCGGTTTATCACCAAATCATAAGATGCGTGGGAAACTATATAGATGGCGCTGTTGTTATGGAGGAGTTATAAAGACACTACCATCTCTGACGTCATACTCGTGAGCCATGTGTCAAAGAAATTTCGAAACCTCGAAACATAGATAGATGGGGTACAGTAACCTTCTAGAAGTATAAGCCGTAACGAATCAATAAACACAAAAAGAAAAATGAGTCACAACTCGAAAGGCGCCCTTCCCGCAAAAATGGGCGGAGTCAATGTTTCGGAATGGGCGGGGAGCGATGTTTGCGAGGGAAGTGAGGGACGGGTGGTGGTGGACATACTCTACGACACTGCGGGAG</canonical>
            <polymorphic>GATTGCACATCTTGGAACTGATGCCACGCGTAGTCTTCTAGAATCTGATCCACATCGACGTGGTTCATTTTCTGAAATCGGTAAAAATATTATACTAGTTAGAAACTAAAAACAGAGAAAGATCGAGAAAAATAAAGTGAAATAAAGCCAATCAGTGCTGGTTTAGCGGAGGAAAGAGAAGAGAATCCCTGGAGAAACTCCTCACATCAAGTCAATAAGAAAATTAGAGAGTAAGAGAAACACAAGAAGAAGAGAAAAGGAAAAGAGTATAAAACTCGAAAATTACACAGATTATCATGTCAGTAACATTGATAACATCACGGTTGAGAAAGCATTTGAAGAAGAAGATTGGCCTTTTGTAATGCTTACAAACAAAAAATATGACAAAGAGCTTGAAAAGGAAACCGACACAATAGGAGTAGAAAAAAGGACCGAAGAGAATAATAGAACTGGCAGAATATTGCATTTTTAGAGCGAGAAAAGCTTTTTCAGTTTCAAAYATTTAAAACCTAGTTTTAGAATAATCTAAAAAATTCCAAAAACAAAGAGGAGAGAAGGGACATGTAAATAGACGCAACTGAAAAAGTTGTTTTTGGATAGTAACTTTTATAGTCTCGAATATTCCCACGACATTCCGCGAGCCTAGTCTTCAATTTCCTCCGGTTTATCACCAAATCATAAGATGCGTGGGAAACTATATAGATGGCGCTGTTGTTATGGAGGAGTTATAAAGACACTACCATCTCTGACGTCATACTCGTGAGCCATGTGTCAAAGAAATTTCGAAACCTCGAAACATAGATAGATGGGGTACAGTAACCTTCTAGAAGTATAAGCCGTAACGAATCAATAAACACAAAAAGAAAAATGAGTCACAACTCGAAAGGCGCCCTTCCCGCAAAAATGGGCGGAGTCAATGTTTCGGAATGGGCGGGGAGCGATGTTTGCGAGGGAAGTGAGGGACGGGTGGTGGTGGACATACTCTACGACACTGCGGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>380 371 120 88 41</canonical_bands>
                <polymorphic_bands>380 371 161 88</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATATGACAAAGAGCTTGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TGGGAATATTCGAGACTATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATATGACAAAGAGCTTGAAAAGGAAACCGACACAATAGGAGTAGAAAAAAGGACCGAAGAGAATAATAGAACTGGCAGAATATTGCATTTTTAGAGCGAGAAAAGCTTTTTCAGTTTCAAATATTTAAAACCTAGTTTTAGAATAATCTAAAAAATTCCAAAAACAAAGAGGAGAGAAGGGACATGTAAATAGACGCAACTGAAAAAGTTGTTTTTGGATAGTAACTTTTATAGTCTCGAATATTCCCA</canonical_amplicon>
		<polymorphic_amplicon>AATATGACAAAGAGCTTGAAAAGGAAACCGACACAATAGGAGTAGAAAAAAGGACCGAAGAGAATAATAGAACTGGCAGAATATTGCATTTTTAGAGCGAGAAAAGCTTTTTCAGTTTCAAAYATTTAAAACCTAGTTTTAGAATAATCTAAAAAATTCCAAAAACAAAGAGGAGAGAAGGGACATGTAAATAGACGCAACTGAAAAAGTTGTTTTTGGATAGTAACTTTTATAGTCTCGAATATTCCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14738</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>278260</contig_pos>
        <strand>+</strand>
        <context>AAATCAGAAA[C/G]GGAGGACGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCAGCTCCAACTGTCACATGGCACTGGCCAGATAACAGAGAAATCAGAAA</left_flank>
        <right_flank>GGAGGACGTGTCAAGCTCGACAATCCAGATTATCAATCCAAATTGGTTGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAATCCATTCGATCGTCCAGATAGACCAGGACGTCCAGAGCCAACTGATTGGGATTCGGATCATGTTGATCTTAAATGGGATCCACCACTTTCTGATGGAGGTGCTCCAATTGAAGAGTACCAGATTGAGAAGAGAACCAAATACGGAAGATGGGAACCAGCTATCACTGTTCCAGGAGGTCAAACCAAGGCCACCGTTCCAGACTTGACACCAAACGAGGAATACGAATTCCGAGTTATCGCTGTCAATAAGGGAGGACCTTCCGACCCATCGGATGCCAGTAAGGCAGTCATTGCCAAGCCAAGAAACTGTGAGTTTGATCAGAAATCAATACCTATGCATATTATTCATTTTCAGTGAAGCCACACATTGACCGTGATGCTCTCAAGAACTTGACTATCAAGGCAGGACAATCTATCTCATTCGACGTTCCAGTATCTGGAGAACCAGCTCCAACTGTCACATGGCACTGGCCAGATAACAGAGAAATCAGAAAGGGAGGACGTGTCAAGCTCGACAATCCAGATTATCAATCCAAATTGGTTGTTAAACAAATGGAGCGTGGAGACAGTGGAACCTTCACAATCAAGGCTGTCAACGTGAACGGAGAAGATGAAGCAACTGTCAAGATTAATGTCATTGGTGAGTTTTCTTTCATTCATGTCCATCATTTCAATCTATCCTAATTTCAGACAAGCCAACTCCACCAAACGGACCATTGGACGTTCTTGATGTTCACGGTGATCATGTCACTTTGGACTGGCGTGCACCAGACGATGATGGAGGCATTCCACTCGAAAACTACGTCATTGAAAAATACGATACAGCCAACGGAAGATGGGTTCCAGCTGCTAAGGTTCCCGGAGATCAAACCACGGCTGTTGTCGACGGATTGATTCCAGGACACGAGTACAAGGTAACTCCCCAGTCAATATTGTACATCCTTCATATCGTAATGTTTCAGTTCCGTGTCGCCGCCGTCAACGCTGAGGGAGAA</canonical>
            <polymorphic>AAGAATCCATTCGATCGTCCAGATAGACCAGGACGTCCAGAGCCAACTGATTGGGATTCGGATCATGTTGATCTTAAATGGGATCCACCACTTTCTGATGGAGGTGCTCCAATTGAAGAGTACCAGATTGAGAAGAGAACCAAATACGGAAGATGGGAACCAGCTATCACTGTTCCAGGAGGTCAAACCAAGGCCACCGTTCCAGACTTGACACCAAACGAGGAATACGAATTCCGAGTTATCGCTGTCAATAAGGGAGGACCTTCCGACCCATCGGATGCCAGTAAGGCAGTCATTGCCAAGCCAAGAAACTGTGAGTTTGATCAGAAATCAATACCTATGCATATTATTCATTTTCAGTGAAGCCACACATTGACCGTGATGCTCTCAAGAACTTGACTATCAAGGCAGGACAATCTATCTCATTCGACGTTCCAGTATCTGGAGAACCAGCTCCAACTGTCACATGGCACTGGCCAGATAACAGAGAAATCAGAAASGGAGGACGTGTCAAGCTCGACAATCCAGATTATCAATCCAAATTGGTTGTTAAACAAATGGAGCGTGGAGACAGTGGAACCTTCACAATCAAGGCTGTCAACGTGAACGGAGAAGATGAAGCAACTGTCAAGATTAATGTCATTGGTGAGTTTTCTTTCATTCATGTCCATCATTTCAATCTATCCTAATTTCAGACAAGCCAACTCCACCAAACGGACCATTGGACGTTCTTGATGTTCACGGTGATCATGTCACTTTGGACTGGCGTGCACCAGACGATGATGGAGGCATTCCACTCGAAAACTACGTCATTGAAAAATACGATACAGCCAACGGAAGATGGGTTCCAGCTGCTAAGGTTCCCGGAGATCAAACCACGGCTGTTGTCGACGGATTGATTCCAGGACACGAGTACAAGGTAACTCCCCAGTCAATATTGTACATCCTTCATATCGTAATGTTTCAGTTCCGTGTCGCCGCCGTCAACGCTGAGGGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTATCAAGGCAGGACAATCTAT</pcr_primer_p1>
		<pcr_primer_p2>ACCAATGACATTAATCTTGACAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTATCAAGGCAGGACAATCTATCTCATTCGACGTTCCAGTATCTGGAGAACCAGCTCCAACTGTCACATGGCACTGGCCAGATAACAGAGAAATCAGAAAGGGAGGACGTGTCAAGCTCGACAATCCAGATTATCAATCCAAATTGGTTGTTAAACAAATGGAGCGTGGAGACAGTGGAACCTTCACAATCAAGGCTGTCAACGTGAACGGAGAAGATGAAGCAACTGTCAAGATTAATGTCATTGGT</canonical_amplicon>
		<polymorphic_amplicon>ACTATCAAGGCAGGACAATCTATCTCATTCGACGTTCCAGTATCTGGAGAACCAGCTCCAACTGTCACATGGCACTGGCCAGATAACAGAGAAATCAGAAASGGAGGACGTGTCAAGCTCGACAATCCAGATTATCAATCCAAATTGGTTGTTAAACAAATGGAGCGTGGAGACAGTGGAACCTTCACAATCAAGGCTGTCAACGTGAACGGAGAAGATGAAGCAACTGTCAAGATTAATGTCATTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14739</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>278102</contig_pos>
        <strand>+</strand>
        <context>CAATACCTAT[C/G]CATATTATTC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTCATTGCCAAGCCAAGAAACTGTGAGTTTGATCAGAAATCAATACCTAT</left_flank>
        <right_flank>CATATTATTCATTTTCAGTGAAGCCACACATTGACCGTGATGCTCTCAAG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACGAAGGACGGAATCTGGGTTCCATGTGGACGAAGTGGTGATACTCACTTCACAGTCGACACTCTCAACAAAGGAGATCACTACAAGTTCCGTGTGAAGGCAGTCAACAGTGAAGGAGCATCTGAACCATTGGAGACTGACACCGACATCTTGGCCAAGAATCCATTCGATCGTCCAGATAGACCAGGACGTCCAGAGCCAACTGATTGGGATTCGGATCATGTTGATCTTAAATGGGATCCACCACTTTCTGATGGAGGTGCTCCAATTGAAGAGTACCAGATTGAGAAGAGAACCAAATACGGAAGATGGGAACCAGCTATCACTGTTCCAGGAGGTCAAACCAAGGCCACCGTTCCAGACTTGACACCAAACGAGGAATACGAATTCCGAGTTATCGCTGTCAATAAGGGAGGACCTTCCGACCCATCGGATGCCAGTAAGGCAGTCATTGCCAAGCCAAGAAACTGTGAGTTTGATCAGAAATCAATACCTATGCATATTATTCATTTTCAGTGAAGCCACACATTGACCGTGATGCTCTCAAGAACTTGACTATCAAGGCAGGACAATCTATCTCATTCGACGTTCCAGTATCTGGAGAACCAGCTCCAACTGTCACATGGCACTGGCCAGATAACAGAGAAATCAGAAAGGGAGGACGTGTCAAGCTCGACAATCCAGATTATCAATCCAAATTGGTTGTTAAACAAATGGAGCGTGGAGACAGTGGAACCTTCACAATCAAGGCTGTCAACGTGAACGGAGAAGATGAAGCAACTGTCAAGATTAATGTCATTGGTGAGTTTTCTTTCATTCATGTCCATCATTTCAATCTATCCTAATTTCAGACAAGCCAACTCCACCAAACGGACCATTGGACGTTCTTGATGTTCACGGTGATCATGTCACTTTGGACTGGCGTGCACCAGACGATGATGGAGGCATTCCACTCGAAAACTACGTCATTGAAAAATACGATACAGCCAACGGAAGAT</canonical>
            <polymorphic>ACACGAAGGACGGAATCTGGGTTCCATGTGGACGAAGTGGTGATACTCACTTCACAGTCGACACTCTCAACAAAGGAGATCACTACAAGTTCCGTGTGAAGGCAGTCAACAGTGAAGGAGCATCTGAACCATTGGAGACTGACACCGACATCTTGGCCAAGAATCCATTCGATCGTCCAGATAGACCAGGACGTCCAGAGCCAACTGATTGGGATTCGGATCATGTTGATCTTAAATGGGATCCACCACTTTCTGATGGAGGTGCTCCAATTGAAGAGTACCAGATTGAGAAGAGAACCAAATACGGAAGATGGGAACCAGCTATCACTGTTCCAGGAGGTCAAACCAAGGCCACCGTTCCAGACTTGACACCAAACGAGGAATACGAATTCCGAGTTATCGCTGTCAATAAGGGAGGACCTTCCGACCCATCGGATGCCAGTAAGGCAGTCATTGCCAAGCCAAGAAACTGTGAGTTTGATCAGAAATCAATACCTATSCATATTATTCATTTTCAGTGAAGCCACACATTGACCGTGATGCTCTCAAGAACTTGACTATCAAGGCAGGACAATCTATCTCATTCGACGTTCCAGTATCTGGAGAACCAGCTCCAACTGTCACATGGCACTGGCCAGATAACAGAGAAATCAGAAAGGGAGGACGTGTCAAGCTCGACAATCCAGATTATCAATCCAAATTGGTTGTTAAACAAATGGAGCGTGGAGACAGTGGAACCTTCACAATCAAGGCTGTCAACGTGAACGGAGAAGATGAAGCAACTGTCAAGATTAATGTCATTGGTGAGTTTTCTTTCATTCATGTCCATCATTTCAATCTATCCTAATTTCAGACAAGCCAACTCCACCAAACGGACCATTGGACGTTCTTGATGTTCACGGTGATCATGTCACTTTGGACTGGCGTGCACCAGACGATGATGGAGGCATTCCACTCGAAAACTACGTCATTGAAAAATACGATACAGCCAACGGAAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATGCAT</site>
                <isoschizomers>
                    <enzyme>BfrBI</enzyme>
                    <enzyme>EcoT22I</enzyme>
                    <enzyme>Mph1103I</enzyme>
                    <enzyme>NsiI</enzyme>
                    <enzyme>Ppu10I</enzyme>
                    <enzyme>Zsp2I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 428 72</canonical_bands>
                <polymorphic_bands>928 72</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCAGACTTGACACCAAAC</pcr_primer_p1>
		<pcr_primer_p2>TCTCCAGATACTGGAACGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCCAGACTTGACACCAAACGAGGAATACGAATTCCGAGTTATCGCTGTCAATAAGGGAGGACCTTCCGACCCATCGGATGCCAGTAAGGCAGTCATTGCCAAGCCAAGAAACTGTGAGTTTGATCAGAAATCAATACCTATGCATATTATTCATTTTCAGTGAAGCCACACATTGACCGTGATGCTCTCAAGAACTTGACTATCAAGGCAGGACAATCTATCTCATTCGACGTTCCAGTATCTGGAGA</canonical_amplicon>
		<polymorphic_amplicon>TTCCAGACTTGACACCAAACGAGGAATACGAATTCCGAGTTATCGCTGTCAATAAGGGAGGACCTTCCGACCCATCGGATGCCAGTAAGGCAGTCATTGCCAAGCCAAGAAACTGTGAGTTTGATCAGAAATCAATACCTATSCATATTATTCATTTTCAGTGAAGCCACACATTGACCGTGATGCTCTCAAGAACTTGACTATCAAGGCAGGACAATCTATCTCATTCGACGTTCCAGTATCTGGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14740</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>309728</contig_pos>
        <strand>+</strand>
        <context>ATCTGATCTT[C/T]GTTGCTGTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATGTATGTTTCTGAAAAATATTTGTTTCATGATCTCAAAATCTGATCTT</left_flank>
        <right_flank>GTTGCTGTCATTTCTGGATCAAAAATTTTTTTTCAAAACTTTCTGTTTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCCACGAAAAGCTAGGCCCAGGGACGCGGGCGCCACGAAGCAACCGAGGGGAGCCAACACTATACTGTTTACAGGACAACGCGCAACCATCGTCAGAGGGCGAAACTAACGAAACTGCAAGCAAACGATAGCGTTTCAGGGGAGGGGTGAGTGGGAAACAGAGATAGAGAAAAAGAGGAAGTTGGGGCGGCGAGAAAAAAAAAACATAAAAAAAGAAAAAGAAAACTCCGCCCTCTGAAGAAGATGAAGAAAAGAGCGCAACGAGTGTGTCATTGATCTTCGTTCATGTCGACGATGGACGTGTGTGCTGTATAGAGAGGGCAATCCGCATAGCAACGAAACAGAAGAAGACTATTTAGACGACGTCATCAGGAAAAACAAGAAGGAAACATTATTTTTTCGTTTGTTTCATGTCATATCAAATCTCATTCAATGAATGACTATTGTTGATGTATGTTTCTGAAAAATATTTGTTTCATGATCTCAAAATCTGATCTTCGTTGCTGTCATTTCTGGATCAAAAATTTTTTTTCAAAACTTTCTGTTTCACTTCCTCTCAACTCACAGTTATCAGTTTTCAATTGTATACTTCTGAACAAAAAAGTTTACGAAAAAATTTCTAGTTCCAGTTGTATGAAAATGTAATACGATATATTCAGATTGACTGGAGGAATATATTCTTGATAACCTAGATATTATTCAGTGAACTGCAGTTAACAAATTTGTAAAGGAAATATCTTTCAGGCAAGAGAAGAACGGGAATGTAGAAATAACTTTTCCACAGATCTATTCTGACACAAATTTGACTGGAAGGATACGGAATTCCTATAATTAATTGTCACCTGAACAAATTTATGAATCTTTACTAATAACAATCACCAAGTTCTGTGTGTGTGTGTGTGTCCGGTGTTCCCGGTTAGCGGACCCTAGCGAAGTCCACGCTGAACCAAAATTCCCCAAATTTTCACAGAAAACCCGAAATAGCAGCGAGATGATGCC</canonical>
            <polymorphic>GGCCACGAAAAGCTAGGCCCAGGGACGCGGGCGCCACGAAGCAACCGAGGGGAGCCAACACTATACTGTTTACAGGACAACGCGCAACCATCGTCAGAGGGCGAAACTAACGAAACTGCAAGCAAACGATAGCGTTTCAGGGGAGGGGTGAGTGGGAAACAGAGATAGAGAAAAAGAGGAAGTTGGGGCGGCGAGAAAAAAAAAACATAAAAAAAGAAAAAGAAAACTCCGCCCTCTGAAGAAGATGAAGAAAAGAGCGCAACGAGTGTGTCATTGATCTTCGTTCATGTCGACGATGGACGTGTGTGCTGTATAGAGAGGGCAATCCGCATAGCAACGAAACAGAAGAAGACTATTTAGACGACGTCATCAGGAAAAACAAGAAGGAAACATTATTTTTTCGTTTGTTTCATGTCATATCAAATCTCATTCAATGAATGACTATTGTTGATGTATGTTTCTGAAAAATATTTGTTTCATGATCTCAAAATCTGATCTTYGTTGCTGTCATTTCTGGATCAAAAATTTTTTTTCAAAACTTTCTGTTTCACTTCCTCTCAACTCACAGTTATCAGTTTTCAATTGTATACTTCTGAACAAAAAAGTTTACGAAAAAATTTCTAGTTCCAGTTGTATGAAAATGTAATACGATATATTCAGATTGACTGGAGGAATATATTCTTGATAACCTAGATATTATTCAGTGAACTGCAGTTAACAAATTTGTAAAGGAAATATCTTTCAGGCAAGAGAAGAACGGGAATGTAGAAATAACTTTTCCACAGATCTATTCTGACACAAATTTGACTGGAAGGATACGGAATTCCTATAATTAATTGTCACCTGAACAAATTTATGAATCTTTACTAATAACAATCACCAAGTTCTGTGTGTGTGTGTGTGTCCGGTGTTCCCGGTTAGCGGACCCTAGCGAAGTCCACGCTGAACCAAAATTCCCCAAATTTTCACAGAAAACCCGAAATAGCAGCGAGATGATGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAATGAATGACTATTGTTGATG</pcr_primer_p1>
		<pcr_primer_p2>TATATTCCTCCAGTCAATCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCAATGAATGACTATTGTTGATGTATGTTTCTGAAAAATATTTGTTTCATGATCTCAAAATCTGATCTTCGTTGCTGTCATTTCTGGATCAAAAATTTTTTTTCAAAACTTTCTGTTTCACTTCCTCTCAACTCACAGTTATCAGTTTTCAATTGTATACTTCTGAACAAAAAAGTTTACGAAAAAATTTCTAGTTCCAGTTGTATGAAAATGTAATACGATATATTCAGATTGACTGGAGGAATATA</canonical_amplicon>
		<polymorphic_amplicon>TCAATGAATGACTATTGTTGATGTATGTTTCTGAAAAATATTTGTTTCATGATCTCAAAATCTGATCTTYGTTGCTGTCATTTCTGGATCAAAAATTTTTTTTCAAAACTTTCTGTTTCACTTCCTCTCAACTCACAGTTATCAGTTTTCAATTGTATACTTCTGAACAAAAAAGTTTACGAAAAAATTTCTAGTTCCAGTTGTATGAAAATGTAATACGATATATTCAGATTGACTGGAGGAATATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14741</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>312281</contig_pos>
        <strand>+</strand>
        <context>AAGAAGTGGA[A/T]GTGAATGGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAGCAGAAGATTTCAAACCAACGGAACCAGCAGCAAAAGAAGAAGTGGA</left_flank>
        <right_flank>GTGAATGGAATGACTAGAGATCAATTCAAGAAAGCAGCTGTAAAAGTGGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAGGGGAAAACGAGAAAATAAATCCTTAAAATATTAACATTTTTAGGTTACGGTAGTTGGACCTTCAGCCACGGTCACCTCTTCTACAGCTCTAATTTTTTGTATCAGAATAATATATTAACTCAATTTCTAGATCTCAACCCAATAATCAAAACCCCACCATACCATGATCGGGTTCCAAAAATCAGAAAAGTTGCGGCAAAAACGGTTGGTTACTTGTTGTTAATTTAAACACTTTGTAAACTTTTAGAAAAAGAAAAAAGGGAAAGTATCGAAATCTTCGAAAGAATCAAGCCGCCAATCAGAAACCAAAAGGGAAACTTGTAAGTTTCGAAAGCCAACCGAGCTAAGATTGTTAATTAAGTTTCAGTAATGATGCCAGAAATTCATCATACAAGACACTTTGATCCAATTGGAGGAGAAGAGCAAGGTTTTGCGAAAAAAGAAAAAGCAGAAGATTTCAAACCAACGGAACCAGCAGCAAAAGAAGAAGTGGATGTGAATGGAATGACTAGAGATCAATTCAAGAAAGCAGCTGTAAAAGTGGTAGAATATCTCATGAAACAAGATGAGAACATTCGAACAGCTCGTTGTTCTCCTGCACTGAAACCAGGATATCTAAAGGCTCTTCTACCTACAAAAGCACCTACAAAAGCTGAAGACATTGATGATATCCTCGAAGATTATCACAAATTGATCGTTCCGGGTCTATCGCATTCAAGTCATCCCAATTTCCATTCGTTTTATCCAGCTGGAAATCCGTTTCATTGTCTTCTTGCTGATCTTCTTGGTGGTCATATCGGTGATGCTGGCTTCTATTGGACGTCGAATCCAGCACTAACTGAACTGGAAGTGATCATGATGGATTGGTTGGGTGAAATGATGGCTCTTCCAAAAGAGTTTTTATTGTTTCCGGAAGGTAGTCGCGGCGGAGGCTGTATGCAGGTAATGAAGAATTCAAACGAGTCCCAAAATATCATTATTTTTCCAGAGATCTG</canonical>
            <polymorphic>TTCAGGGGAAAACGAGAAAATAAATCCTTAAAATATTAACATTTTTAGGTTACGGTAGTTGGACCTTCAGCCACGGTCACCTCTTCTACAGCTCTAATTTTTTGTATCAGAATAATATATTAACTCAATTTCTAGATCTCAACCCAATAATCAAAACCCCACCATACCATGATCGGGTTCCAAAAATCAGAAAAGTTGCGGCAAAAACGGTTGGTTACTTGTTGTTAATTTAAACACTTTGTAAACTTTTAGAAAAAGAAAAAAGGGAAAGTATCGAAATCTTCGAAAGAATCAAGCCGCCAATCAGAAACCAAAAGGGAAACTTGTAAGTTTCGAAAGCCAACCGAGCTAAGATTGTTAATTAAGTTTCAGTAATGATGCCAGAAATTCATCATACAAGACACTTTGATCCAATTGGAGGAGAAGAGCAAGGTTTTGCGAAAAAAGAAAAAGCAGAAGATTTCAAACCAACGGAACCAGCAGCAAAAGAAGAAGTGGAWGTGAATGGAATGACTAGAGATCAATTCAAGAAAGCAGCTGTAAAAGTGGTAGAATATCTCATGAAACAAGATGAGAACATTCGAACAGCTCGTTGTTCTCCTGCACTGAAACCAGGATATCTAAAGGCTCTTCTACCTACAAAAGCACCTACAAAAGCTGAAGACATTGATGATATCCTCGAAGATTATCACAAATTGATCGTTCCGGGTCTATCGCATTCAAGTCATCCCAATTTCCATTCGTTTTATCCAGCTGGAAATCCGTTTCATTGTCTTCTTGCTGATCTTCTTGGTGGTCATATCGGTGATGCTGGCTTCTATTGGACGTCGAATCCAGCACTAACTGAACTGGAAGTGATCATGATGGATTGGTTGGGTGAAATGATGGCTCTTCCAAAAGAGTTTTTATTGTTTCCGGAAGGTAGTCGCGGCGGAGGCTGTATGCAGGTAATGAAGAATTCAAACGAGTCCCAAAATATCATTATTTTTCCAGAGATCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAAATTCATCATACAAGACACT</pcr_primer_p1>
		<pcr_primer_p2>CCTTTAGATATCCTGGTTTCAGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAGAAATTCATCATACAAGACACTTTGATCCAATTGGAGGAGAAGAGCAAGGTTTTGCGAAAAAAGAAAAAGCAGAAGATTTCAAACCAACGGAACCAGCAGCAAAAGAAGAAGTGGATGTGAATGGAATGACTAGAGATCAATTCAAGAAAGCAGCTGTAAAAGTGGTAGAATATCTCATGAAACAAGATGAGAACATTCGAACAGCTCGTTGTTCTCCTGCACTGAAACCAGGATATCTAAAGG</canonical_amplicon>
		<polymorphic_amplicon>CAGAAATTCATCATACAAGACACTTTGATCCAATTGGAGGAGAAGAGCAAGGTTTTGCGAAAAAAGAAAAAGCAGAAGATTTCAAACCAACGGAACCAGCAGCAAAAGAAGAAGTGGAWGTGAATGGAATGACTAGAGATCAATTCAAGAAAGCAGCTGTAAAAGTGGTAGAATATCTCATGAAACAAGATGAGAACATTCGAACAGCTCGTTGTTCTCCTGCACTGAAACCAGGATATCTAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14742</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>328179</contig_pos>
        <strand>+</strand>
        <context>TTGGGTTCTA[A/T]TATCAATCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAAGGAAACTTTTGAAGAAGACGAAGACGATCTGAAATTTTGGGTTCTA</left_flank>
        <right_flank>TATCAATCGTTCTGAAATCTATATTACTTCTTGGGTATCGTCATCCAACG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTGTAAACTGAAATCCCCTTCTCCAGAGAGTATCGGACGACCGATGTCCGCTTGGGCAACCGGAAGAATCTGGATTGAAGCAAATCCTTCATCATGCTGAACTCCATTCATCACGGCGTTTGCTTGGTTTTCACTGATGTTATTTTTCTGAAAACTTGAGAAATTACAGAGCTTCTTCTAACATGTTTACGTTCATGAAGTTGCTAAGCATTCCAAGCATTGGGTGTGGCTTGTCTGTTCCGTTTCCGTTACCATTTTTATTGAATGAGGAAAACAGAGATCCAATACTTCCAAACATGTTTCCATTCCCTCCCATCATTCCATTTCCATTTCCATTTCCTGATCCCATGGTGCTGTTGTTTCCTCCGAAGAATTCAGAAGCTTTTTGGTACATGTTGGTCAAAAAGTTTCCGTTGTCAACACATCTTGGTTTGGTAAATTGTGGTGGAAGGAAACTTTTGAAGAAGACGAAGACGATCTGAAATTTTGGGTTCTATTATCAATCGTTCTGAAATCTATATTACTTCTTGGGTATCGTCATCCAACGAGTTTATATAAGTCATCATTCTCGAGTGCATTTCCATGGCTGTCTGATTCTTATCAGCACGGATAGCCTTCAAATTGTTGATAACGTTTGGAAGATTCATGACAACATCATTGGCATGAGCCTCAGCGGCAGCAGTCTCATTTTCCTTTCTTTGGTTGAATGCCTCAACTTCTTGAGTCAATCCATACTTGGCTGCCCATTCATCAACAGCGGTTTCGAATTCATTGATCGTCATGTTTCCAACCTTTGGAAGAATTGCATAGAATTCAGTCTTTGCTTCAGTGGAGGCATTGGCAAGGAATGGAACAAAGCTGCCGATGACGTCAGATGCGCTACCCGACCATGGTGTTGGTCCGTTTTTCAAGTTATTGCTAAACAATGATTTCATTTGAATTCCAGAAAAAACATTTTAAACATACTAGAAATCGATTCCACTTTGTACAGCTTCAC</canonical>
            <polymorphic>GATTTGTAAACTGAAATCCCCTTCTCCAGAGAGTATCGGACGACCGATGTCCGCTTGGGCAACCGGAAGAATCTGGATTGAAGCAAATCCTTCATCATGCTGAACTCCATTCATCACGGCGTTTGCTTGGTTTTCACTGATGTTATTTTTCTGAAAACTTGAGAAATTACAGAGCTTCTTCTAACATGTTTACGTTCATGAAGTTGCTAAGCATTCCAAGCATTGGGTGTGGCTTGTCTGTTCCGTTTCCGTTACCATTTTTATTGAATGAGGAAAACAGAGATCCAATACTTCCAAACATGTTTCCATTCCCTCCCATCATTCCATTTCCATTTCCATTTCCTGATCCCATGGTGCTGTTGTTTCCTCCGAAGAATTCAGAAGCTTTTTGGTACATGTTGGTCAAAAAGTTTCCGTTGTCAACACATCTTGGTTTGGTAAATTGTGGTGGAAGGAAACTTTTGAAGAAGACGAAGACGATCTGAAATTTTGGGTTCTAWTATCAATCGTTCTGAAATCTATATTACTTCTTGGGTATCGTCATCCAACGAGTTTATATAAGTCATCATTCTCGAGTGCATTTCCATGGCTGTCTGATTCTTATCAGCACGGATAGCCTTCAAATTGTTGATAACGTTTGGAAGATTCATGACAACATCATTGGCATGAGCCTCAGCGGCAGCAGTCTCATTTTCCTTTCTTTGGTTGAATGCCTCAACTTCTTGAGTCAATCCATACTTGGCTGCCCATTCATCAACAGCGGTTTCGAATTCATTGATCGTCATGTTTCCAACCTTTGGAAGAATTGCATAGAATTCAGTCTTTGCTTCAGTGGAGGCATTGGCAAGGAATGGAACAAAGCTGCCGATGACGTCAGATGCGCTACCCGACCATGGTGTTGGTCCGTTTTTCAAGTTATTGCTAAACAATGATTTCATTTGAATTCCAGAAAAAACATTTTAAACATACTAGAAATCGATTCCACTTTGTACAGCTTCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACATGTTGGTCAAAAAGTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTATCAACAATTTGAAGGCTATC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GTACATGTTGGTCAAAAAGTTTCCGTTGTCAACACATCTTGGTTTGGTAAATTGTGGTGGAAGGAAACTTTTGAAGAAGACGAAGACGATCTGAAATTTTGGGTTCTATTATCAATCGTTCTGAAATCTATATTACTTCTTGGGTATCGTCATCCAACGAGTTTATATAAGTCATCATTCTCGAGTGCATTTCCATGGCTGTCTGATTCTTATCAGCACGGATAGCCTTCAAATTGTTGATAA</canonical_amplicon>
		<polymorphic_amplicon>GTACATGTTGGTCAAAAAGTTTCCGTTGTCAACACATCTTGGTTTGGTAAATTGTGGTGGAAGGAAACTTTTGAAGAAGACGAAGACGATCTGAAATTTTGGGTTCTAWTATCAATCGTTCTGAAATCTATATTACTTCTTGGGTATCGTCATCCAACGAGTTTATATAAGTCATCATTCTCGAGTGCATTTCCATGGCTGTCTGATTCTTATCAGCACGGATAGCCTTCAAATTGTTGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14743</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>331419</contig_pos>
        <strand>+</strand>
        <context>TAGACAAGTA[A/G]GAGGGTGGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTTACATATCGAATTAACAAAAAACAACCGTTCCTAAATAGACAAGTA</left_flank>
        <right_flank>GAGGGTGGTTATTTCAAATAGCCGTCCATCTCCGTTTTCCATTCGCTCAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATAGACCCAATACTCGAATTATGAAGCTCAACAAAGTTCGGTCAAAAGTGAAATGGAGAAGAACGTCACTCAGTTGATTTCTGAGTTGTCTCTCGTAAACTCTCAAATGTTCAAAATTCTTCAAAACGACACCTTGAGCATCGAAGAACAAAGAGAGGAAGTGAATGAGCTGGCTGAGCAATATTCAAAAGTGATTGATTTATGGACGACTGAAAAACCAATTCATATTTTTCCCTTTAGGAAATCCCAACCCTTCTGTTCATTCGTCGTCTCTTCAATCCTCAGGATGACGTCTCAAACAAACAATCCATTGTCTGATCTTTTCTCTGCGTCTCGTTTGTCTCTCTGTTGCTCTATAAACTGTGACAAAGTACTTTTTTCAAGATTCTCAAAATTGTATCGGTCTATCCACCGGAAAAGTTAGAATATTGTACTTCCGCTTTTTTCAAGTTTACATATCGAATTAACAAAAAACAACCGTTCCTAAATAGACAAGTAAGAGGGTGGTTATTTCAAATAGCCGTCCATCTCCGTTTTCCATTCGCTCATCACAACAATGACAGATGCATTGACATGAGCTGAATAGATATTTTGAAGGGAAGGTCATCTTGTAATTACTTGTAAAGAAGGAGAGTGGAGGGGGCACTCTTCGTCAACCCCACCACTTATTATCGTGTGACGAACACAGGTTGGCTGGTCTATTCCCCTCTCAAACCTCCTATTGATTTTTTTTGTGTTTTTTGATTTTTTGACTCATTCAAAACACCAAATATTCGATAATTTTTATGTATTCTGTGCGGATTTCATCATTTTCCTTTTTTCTTAGTTTGAACATTTTCTATGACGAAATCAAAAATTTTTAGTCCTACTCGGGCGTCGACGGAAACTTCTGGTTAGCAATTGGTCCGATTCCGGATAAGAGCCTAACAAAGGCTGATTAAACTCCGATCAACTCATGACAAGGTTCTGACATAGGAGTATTTTAATTTTCAACATCTG</canonical>
            <polymorphic>CATAGACCCAATACTCGAATTATGAAGCTCAACAAAGTTCGGTCAAAAGTGAAATGGAGAAGAACGTCACTCAGTTGATTTCTGAGTTGTCTCTCGTAAACTCTCAAATGTTCAAAATTCTTCAAAACGACACCTTGAGCATCGAAGAACAAAGAGAGGAAGTGAATGAGCTGGCTGAGCAATATTCAAAAGTGATTGATTTATGGACGACTGAAAAACCAATTCATATTTTTCCCTTTAGGAAATCCCAACCCTTCTGTTCATTCGTCGTCTCTTCAATCCTCAGGATGACGTCTCAAACAAACAATCCATTGTCTGATCTTTTCTCTGCGTCTCGTTTGTCTCTCTGTTGCTCTATAAACTGTGACAAAGTACTTTTTTCAAGATTCTCAAAATTGTATCGGTCTATCCACCGGAAAAGTTAGAATATTGTACTTCCGCTTTTTTCAAGTTTACATATCGAATTAACAAAAAACAACCGTTCCTAAATAGACAAGTARGAGGGTGGTTATTTCAAATAGCCGTCCATCTCCGTTTTCCATTCGCTCATCACAACAATGACAGATGCATTGACATGAGCTGAATAGATATTTTGAAGGGAAGGTCATCTTGTAATTACTTGTAAAGAAGGAGAGTGGAGGGGGCACTCTTCGTCAACCCCACCACTTATTATCGTGTGACGAACACAGGTTGGCTGGTCTATTCCCCTCTCAAACCTCCTATTGATTTTTTTTGTGTTTTTTGATTTTTTGACTCATTCAAAACACCAAATATTCGATAATTTTTATGTATTCTGTGCGGATTTCATCATTTTCCTTTTTTCTTAGTTTGAACATTTTCTATGACGAAATCAAAAATTTTTAGTCCTACTCGGGCGTCGACGGAAACTTCTGGTTAGCAATTGGTCCGATTCCGGATAAGAGCCTAACAAAGGCTGATTAAACTCCGATCAACTCATGACAAGGTTCTGACATAGGAGTATTTTAATTTTCAACATCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTGCTCTATAAACTGTGACAA</pcr_primer_p1>
		<pcr_primer_p2>TCAAAATATCTATTCAGCTCATGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTTGCTCTATAAACTGTGACAAAGTACTTTTTTCAAGATTCTCAAAATTGTATCGGTCTATCCACCGGAAAAGTTAGAATATTGTACTTCCGCTTTTTTCAAGTTTACATATCGAATTAACAAAAAACAACCGTTCCTAAATAGACAAGTAAGAGGGTGGTTATTTCAAATAGCCGTCCATCTCCGTTTTCCATTCGCTCATCACAACAATGACAGATGCATTGACATGAGCTGAATAGATATTTTGA</canonical_amplicon>
		<polymorphic_amplicon>TGTTGCTCTATAAACTGTGACAAAGTACTTTTTTCAAGATTCTCAAAATTGTATCGGTCTATCCACCGGAAAAGTTAGAATATTGTACTTCCGCTTTTTTCAAGTTTACATATCGAATTAACAAAAAACAACCGTTCCTAAATAGACAAGTARGAGGGTGGTTATTTCAAATAGCCGTCCATCTCCGTTTTCCATTCGCTCATCACAACAATGACAGATGCATTGACATGAGCTGAATAGATATTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14744</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>353488</contig_pos>
        <strand>+</strand>
        <context>AAACGGTAGA[G/T]GAATATCTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTACCGATACAATGTTCGACAACAAAAAGTTTCTCCAAGAAACGGTAGA</left_flank>
        <right_flank>GAATATCTAGACATCAGCACCACTTTTCTTGCCTCTCCCTCCCTCACCCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGCAATTTTTAAGAGCGATCTTTATCCCGAAGAACAAAAAGCTGCCGTCGGATTCATTCGCTAGAGAATTCCGTTTTGTAAAATAATGAACCGGTTTCCAGATAGATCATGATACGGCTCAAAATCTCCAGCGGAACAAAAGGATACATTTTGTGTCTTTGCAGAACAAAAAGTGGAAAAATGTGACTTTGTATATCAAAACTGGATGTGGGTTTCCGATATCTAGAGATTCCCGTCTTTGACTGTTCACTTAAACGATTTTCGGATAAATTACTAATTTGAATGTACTAGTTCTCTATCGCATAACTATTCCCAGACACTATTTTATTATGGGTTATCCATATGCATATTTTTTTACCTAAAAGATATTCCAATGGGAGCTCGGGTAAGATTCAAATCAGATCCCATTTTCCATCAGAGGGCGGACTTTGTATCGGTGTGTGCTAATCTACCGATACAATGTTCGACAACAAAAAGTTTCTCCAAGAAACGGTAGATGAATATCTAGACATCAGCACCACTTTTCTTGCCTCTCCCTCCCTCACCCACTTCGCCTTTCCTGATTTCCTCATTTGATAACTTACGTCGATTCCGAAATGTTGGGATCCATCGTATTGCCTTTCGCAGACTCGGCAATGAATGTCGGAAGCCGAGACTACATTTGGGCTTGTTGATGTTCCAGGAATCGATAGAGGAGAAGTCGGGTGTCTCCTGAAAATACATCAGGATTTCAGAGATTGTTTACATTATAGGTGTCATTTTCGCAACTGGGGTTTTTATTCCGAGAATCTCTTATTTCAGAAAAAGGAACTCTCGATGTGGATGGACGTTAGATATAACATCCATGTTCATTTAAAGAATTTTTAAAACTCGATCAAGCGGAAGCGTCGTAATGTGAATTTTTAATTGAAAATAATTTAGAAATTGTCGAAAACCATTCAAAAAGATTAGACAACTCTGAAACTTACATCATGACTGCCTGGAGCGTAGCAGTCGGA</canonical>
            <polymorphic>TTCGCAATTTTTAAGAGCGATCTTTATCCCGAAGAACAAAAAGCTGCCGTCGGATTCATTCGCTAGAGAATTCCGTTTTGTAAAATAATGAACCGGTTTCCAGATAGATCATGATACGGCTCAAAATCTCCAGCGGAACAAAAGGATACATTTTGTGTCTTTGCAGAACAAAAAGTGGAAAAATGTGACTTTGTATATCAAAACTGGATGTGGGTTTCCGATATCTAGAGATTCCCGTCTTTGACTGTTCACTTAAACGATTTTCGGATAAATTACTAATTTGAATGTACTAGTTCTCTATCGCATAACTATTCCCAGACACTATTTTATTATGGGTTATCCATATGCATATTTTTTTACCTAAAAGATATTCCAATGGGAGCTCGGGTAAGATTCAAATCAGATCCCATTTTCCATCAGAGGGCGGACTTTGTATCGGTGTGTGCTAATCTACCGATACAATGTTCGACAACAAAAAGTTTCTCCAAGAAACGGTAGAKGAATATCTAGACATCAGCACCACTTTTCTTGCCTCTCCCTCCCTCACCCACTTCGCCTTTCCTGATTTCCTCATTTGATAACTTACGTCGATTCCGAAATGTTGGGATCCATCGTATTGCCTTTCGCAGACTCGGCAATGAATGTCGGAAGCCGAGACTACATTTGGGCTTGTTGATGTTCCAGGAATCGATAGAGGAGAAGTCGGGTGTCTCCTGAAAATACATCAGGATTTCAGAGATTGTTTACATTATAGGTGTCATTTTCGCAACTGGGGTTTTTATTCCGAGAATCTCTTATTTCAGAAAAAGGAACTCTCGATGTGGATGGACGTTAGATATAACATCCATGTTCATTTAAAGAATTTTTAAAACTCGATCAAGCGGAAGCGTCGTAATGTGAATTTTTAATTGAAAATAATTTAGAAATTGTCGAAAACCATTCAAAAAGATTAGACAACTCTGAAACTTACATCATGACTGCCTGGAGCGTAGCAGTCGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATNNNNATC</site>
                <isoschizomers>
                    <enzyme>BsaBI</enzyme>
                    <enzyme>Bse8I</enzyme>
                    <enzyme>BseJI</enzyme>
                    <enzyme>BsiBI</enzyme>
                    <enzyme>BsrBRI</enzyme>
                    <enzyme>MamI</enzyme>
                </isoschizomers>
                <canonical_bands>498 373 106 23</canonical_bands>
                <polymorphic_bands>604 373 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTACCTAAAAGATATTCCAATG</pcr_primer_p1>
		<pcr_primer_p2>GAATCGACGTAAGTTATCAAATG</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTTTTACCTAAAAGATATTCCAATGGGAGCTCGGGTAAGATTCAAATCAGATCCCATTTTCCATCAGAGGGCGGACTTTGTATCGGTGTGTGCTAATCTACCGATACAATGTTCGACAACAAAAAGTTTCTCCAAGAAACGGTAGATGAATATCTAGACATCAGCACCACTTTTCTTGCCTCTCCCTCCCTCACCCACTTCGCCTTTCCTGATTTCCTCATTTGATAACTTACGTCGATTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTACCTAAAAGATATTCCAATGGGAGCTCGGGTAAGATTCAAATCAGATCCCATTTTCCATCAGAGGGCGGACTTTGTATCGGTGTGTGCTAATCTACCGATACAATGTTCGACAACAAAAAGTTTCTCCAAGAAACGGTAGAKGAATATCTAGACATCAGCACCACTTTTCTTGCCTCTCCCTCCCTCACCCACTTCGCCTTTCCTGATTTCCTCATTTGATAACTTACGTCGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14745</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>353292</contig_pos>
        <strand>+</strand>
        <context>TTCTCTATCG[A/C]ATAACTATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAAACGATTTTCGGATAAATTACTAATTTGAATGTACTAGTTCTCTATCG</left_flank>
        <right_flank>ATAACTATTCCCAGACACTATTTTATTATGGGTTATCCATATGCATATTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGCTAAAAACATGGTTGTTTGTAACTGATCTATGCCTAGGTGATACTTACTATTCAACGGGCAACTGTTTGTTCCTCTTCTGCATACGAAGGTCTTCTTGACCGATACACTTCGTCGGAAGAATGCTGCACATGCTCGGCAGATCTGAAATTTTCTACTTGAAAAAATTTAAAATAAATCTTCGTCTTTAATTATTCGCAATTTTTAAGAGCGATCTTTATCCCGAAGAACAAAAAGCTGCCGTCGGATTCATTCGCTAGAGAATTCCGTTTTGTAAAATAATGAACCGGTTTCCAGATAGATCATGATACGGCTCAAAATCTCCAGCGGAACAAAAGGATACATTTTGTGTCTTTGCAGAACAAAAAGTGGAAAAATGTGACTTTGTATATCAAAACTGGATGTGGGTTTCCGATATCTAGAGATTCCCGTCTTTGACTGTTCACTTAAACGATTTTCGGATAAATTACTAATTTGAATGTACTAGTTCTCTATCGCATAACTATTCCCAGACACTATTTTATTATGGGTTATCCATATGCATATTTTTTTACCTAAAAGATATTCCAATGGGAGCTCGGGTAAGATTCAAATCAGATCCCATTTTCCATCAGAGGGCGGACTTTGTATCGGTGTGTGCTAATCTACCGATACAATGTTCGACAACAAAAAGTTTCTCCAAGAAACGGTAGATGAATATCTAGACATCAGCACCACTTTTCTTGCCTCTCCCTCCCTCACCCACTTCGCCTTTCCTGATTTCCTCATTTGATAACTTACGTCGATTCCGAAATGTTGGGATCCATCGTATTGCCTTTCGCAGACTCGGCAATGAATGTCGGAAGCCGAGACTACATTTGGGCTTGTTGATGTTCCAGGAATCGATAGAGGAGAAGTCGGGTGTCTCCTGAAAATACATCAGGATTTCAGAGATTGTTTACATTATAGGTGTCATTTTCGCAACTGGGGTTTTTATTCCGAGAATCTCTTATTTCAGA</canonical>
            <polymorphic>ACTGCTAAAAACATGGTTGTTTGTAACTGATCTATGCCTAGGTGATACTTACTATTCAACGGGCAACTGTTTGTTCCTCTTCTGCATACGAAGGTCTTCTTGACCGATACACTTCGTCGGAAGAATGCTGCACATGCTCGGCAGATCTGAAATTTTCTACTTGAAAAAATTTAAAATAAATCTTCGTCTTTAATTATTCGCAATTTTTAAGAGCGATCTTTATCCCGAAGAACAAAAAGCTGCCGTCGGATTCATTCGCTAGAGAATTCCGTTTTGTAAAATAATGAACCGGTTTCCAGATAGATCATGATACGGCTCAAAATCTCCAGCGGAACAAAAGGATACATTTTGTGTCTTTGCAGAACAAAAAGTGGAAAAATGTGACTTTGTATATCAAAACTGGATGTGGGTTTCCGATATCTAGAGATTCCCGTCTTTGACTGTTCACTTAAACGATTTTCGGATAAATTACTAATTTGAATGTACTAGTTCTCTATCGMATAACTATTCCCAGACACTATTTTATTATGGGTTATCCATATGCATATTTTTTTACCTAAAAGATATTCCAATGGGAGCTCGGGTAAGATTCAAATCAGATCCCATTTTCCATCAGAGGGCGGACTTTGTATCGGTGTGTGCTAATCTACCGATACAATGTTCGACAACAAAAAGTTTCTCCAAGAAACGGTAGATGAATATCTAGACATCAGCACCACTTTTCTTGCCTCTCCCTCCCTCACCCACTTCGCCTTTCCTGATTTCCTCATTTGATAACTTACGTCGATTCCGAAATGTTGGGATCCATCGTATTGCCTTTCGCAGACTCGGCAATGAATGTCGGAAGCCGAGACTACATTTGGGCTTGTTGATGTTCCAGGAATCGATAGAGGAGAAGTCGGGTGTCTCCTGAAAATACATCAGGATTTCAGAGATTGTTTACATTATAGGTGTCATTTTCGCAACTGGGGTTTTTATTCCGAGAATCTCTTATTTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTGTTCACTTAAACGATTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTGGAGAAACTTTTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACTGTTCACTTAAACGATTTTCGGATAAATTACTAATTTGAATGTACTAGTTCTCTATCGCATAACTATTCCCAGACACTATTTTATTATGGGTTATCCATATGCATATTTTTTTACCTAAAAGATATTCCAATGGGAGCTCGGGTAAGATTCAAATCAGATCCCATTTTCCATCAGAGGGCGGACTTTGTATCGGTGTGTGCTAATCTACCGATACAATGTTCGACAACAAAAAGTTTCTCCAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>GACTGTTCACTTAAACGATTTTCGGATAAATTACTAATTTGAATGTACTAGTTCTCTATCGMATAACTATTCCCAGACACTATTTTATTATGGGTTATCCATATGCATATTTTTTTACCTAAAAGATATTCCAATGGGAGCTCGGGTAAGATTCAAATCAGATCCCATTTTCCATCAGAGGGCGGACTTTGTATCGGTGTGTGCTAATCTACCGATACAATGTTCGACAACAAAAAGTTTCTCCAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14746</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>378337</contig_pos>
        <strand>+</strand>
        <context>ATTCACATGA[A/G]TTAGTCAGCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCTTTCATCCTAATGAATGGGGCTGGAGGAGAGCATCAAATTCACATGA</left_flank>
        <right_flank>TTAGTCAGCTTGAATTCGTTCTATTCAACGAATTCAATGAAAATGATACG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAACTCGATTTTCTGTTAGTTCCACCTCAATTTTTCCCCTGAAACGTTGCTCAATTTTATTTCCGATGAAACGAAAGCTGTCACGGAATTGTCATTATCCTTCTTTACCCGTTTTCATTAGTGGCCATTTTGAGCACTAAATTTTGCCAATATTGCATGATTAATCGAAAGATTGTTGTTTGCTCAAGAAGCGGATTCCTGTTGATTCTTCTTTTTCCTCTTCTCCATATTCATCTTCTTCTCAAATATACATATTTTGCTATCCATCCAACGGTCAGAATTCTTTTATGCTGCCAATTAAATTGCCTTTCGTTGCGAAAGACGAAACGAAAGGCACGGGGACCTCTTTTTCTTTCTCTCTCAACTGTCCACTTTCTCATTATCTTCGGATTTACGACAGAAACTAAACAACAGGGCGAAAAATTGAAAAGAGACTCCCGGAAAAGATAGCTTTCATCCTAATGAATGGGGCTGGAGGAGAGCATCAAATTCACATGAGTTAGTCAGCTTGAATTCGTTCTATTCAACGAATTCAATGAAAATGATACGCACGAATGACGGCACGAATGATGAAACCAACCTTCTGAATCCCAGAATTGCCACGTGGCATTCACCGCGTGCCTTAGTTGGAAACTATACATGTCCACTAAAGTCACTCAGGTGGACGCCATATGACGACTGGAAAAAATGTATCAATGACATAAGAAGCACTTGAGTAGGTCAAGAATGAAATTAGCTCTGGGGTAATAGGAGAAGAAGAGACAGTCCTTCAGATCAAGAAGGCACAATGAATGTGTCCAGTGAATCGAGGGGCGTGGCCACTTCTTTCTTTTTAGGCAGGTGGTCATAGGGAAGAAGGAGGTCTCTCTGGATTAGATGCTTATGGTCGGACAAGGGCAGGTGGTTCACCGAAAAAGGATTACATGCTATGTGCTCGAAAAGCACGAATACTAGTTGTGGTGGTGGTGGGGGTTACTAGTCAAGAGCCGCGGCGACGTC</canonical>
            <polymorphic>TCAACTCGATTTTCTGTTAGTTCCACCTCAATTTTTCCCCTGAAACGTTGCTCAATTTTATTTCCGATGAAACGAAAGCTGTCACGGAATTGTCATTATCCTTCTTTACCCGTTTTCATTAGTGGCCATTTTGAGCACTAAATTTTGCCAATATTGCATGATTAATCGAAAGATTGTTGTTTGCTCAAGAAGCGGATTCCTGTTGATTCTTCTTTTTCCTCTTCTCCATATTCATCTTCTTCTCAAATATACATATTTTGCTATCCATCCAACGGTCAGAATTCTTTTATGCTGCCAATTAAATTGCCTTTCGTTGCGAAAGACGAAACGAAAGGCACGGGGACCTCTTTTTCTTTCTCTCTCAACTGTCCACTTTCTCATTATCTTCGGATTTACGACAGAAACTAAACAACAGGGCGAAAAATTGAAAAGAGACTCCCGGAAAAGATAGCTTTCATCCTAATGAATGGGGCTGGAGGAGAGCATCAAATTCACATGARTTAGTCAGCTTGAATTCGTTCTATTCAACGAATTCAATGAAAATGATACGCACGAATGACGGCACGAATGATGAAACCAACCTTCTGAATCCCAGAATTGCCACGTGGCATTCACCGCGTGCCTTAGTTGGAAACTATACATGTCCACTAAAGTCACTCAGGTGGACGCCATATGACGACTGGAAAAAATGTATCAATGACATAAGAAGCACTTGAGTAGGTCAAGAATGAAATTAGCTCTGGGGTAATAGGAGAAGAAGAGACAGTCCTTCAGATCAAGAAGGCACAATGAATGTGTCCAGTGAATCGAGGGGCGTGGCCACTTCTTTCTTTTTAGGCAGGTGGTCATAGGGAAGAAGGAGGTCTCTCTGGATTAGATGCTTATGGTCGGACAAGGGCAGGTGGTTCACCGAAAAAGGATTACATGCTATGTGCTCGAAAAGCACGAATACTAGTTGTGGTGGTGGTGGGGGTTACTAGTCAAGAGCCGCGGCGACGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTCTTTTTCTTTCTCTCTCAA</pcr_primer_p1>
		<pcr_primer_p2>GATTCAGAAGGTTGGTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACCTCTTTTTCTTTCTCTCTCAACTGTCCACTTTCTCATTATCTTCGGATTTACGACAGAAACTAAACAACAGGGCGAAAAATTGAAAAGAGACTCCCGGAAAAGATAGCTTTCATCCTAATGAATGGGGCTGGAGGAGAGCATCAAATTCACATGAGTTAGTCAGCTTGAATTCGTTCTATTCAACGAATTCAATGAAAATGATACGCACGAATGACGGCACGAATGATGAAACCAACCTTCTGAATC</canonical_amplicon>
		<polymorphic_amplicon>ACCTCTTTTTCTTTCTCTCTCAACTGTCCACTTTCTCATTATCTTCGGATTTACGACAGAAACTAAACAACAGGGCGAAAAATTGAAAAGAGACTCCCGGAAAAGATAGCTTTCATCCTAATGAATGGGGCTGGAGGAGAGCATCAAATTCACATGARTTAGTCAGCTTGAATTCGTTCTATTCAACGAATTCAATGAAAATGATACGCACGAATGACGGCACGAATGATGAAACCAACCTTCTGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14747</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>382053</contig_pos>
        <strand></strand>
        <context>CTTCATTGTT[C/T]TCTTTGTTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGATGATTTCCTTCAACTGCCATCCTCAATGGAGTTTTTCCTTCATTGTT</left_flank>
        <right_flank>TCTTTGTTCAAAGCCTTAATTGCTTCTATTGGATCATGCTCCATCATCAT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGTAGTTTCAGTTTGGTCTTTCAAATATTGTAGGATATATCCAACGGAAAGAAGAGCATTATATTTCGCACCTATGTAGACTGGAGTCCTTTCATCCCTGTCCGTAATTGTAAGGTCTACACCTTTCTCAATCAGATATTTAACACAATCCAAACTGTCCTGGGATACTGCTAACATCAAAGGAGTCATCTCATTTTCATCTGCCGCATCTCGAGTATTCTCATCCATAAGATACTCTACACATTCCAACTGATTCATTTTAGCTGCGACGTGAAGTGGAAGAGCTTGTTTTGAATTTTGTTCATTCTTGTTGCCTCCAGCTTCCACAAGAGCTTTTATAATGTCGAGATATCCTTTTTCAGCGGCAAAATGAATCAATTCCTTCTCTCTCACCATCCATTTTTGTGAATTCTTGCTCTCCATTTCCAGAATTTTCTTCAACGCCTCCGGATGATTTCCTTCAACTGCCATCCTCAATGGAGTTTTTCCTTCATTGTTCTCTTTGTTCAAAGCCTTAATTGCTTCTATTGGATCATGCTCCATCATCATTTTCAAAAAGTCAGGTTCTCCTCGAAGCGCGACAATGTGAAATACAGTATTCAGGCGAAGATCCCTTTTGGTGACGTCACTTTTGGCCTTGATAAGTTCTTTGATCACTTCTTGACTTCCATGAACACATGCCAAAAGAAGAGGAGTCATCTGATTCATGTCTTCTGCATCCACGTTGGCTTTCAGCTTAACTAGAGCCTGGACTGCAGCGATATTGGATTTCATTGCAGCATAATGAAGAGGTGTCAGGAAGTATTCATTGGGAGAGTCAATATCCCTAGAATCCACAAAAAAATGTCATTGATCTGTTTGTAAAAAATATGGAAACTCACGATTTGGCTGCAACCAATGAATTGATTATCTTCTTAGTTGCAGAATTGTACATTCTTTCAGAATCCAGTCGATCCATCACAACCATTCCTCTTTCATTTGTGATTGAACATATATCAC</canonical>
            <polymorphic>GCGTAGTTTCAGTTTGGTCTTTCAAATATTGTAGGATATATCCAACGGAAAGAAGAGCATTATATTTCGCACCTATGTAGACTGGAGTCCTTTCATCCCTGTCCGTAATTGTAAGGTCTACACCTTTCTCAATCAGATATTTAACACAATCCAAACTGTCCTGGGATACTGCTAACATCAAAGGAGTCATCTCATTTTCATCTGCCGCATCTCGAGTATTCTCATCCATAAGATACTCTACACATTCCAACTGATTCATTTTAGCTGCGACGTGAAGTGGAAGAGCTTGTTTTGAATTTTGTTCATTCTTGTTGCCTCCAGCTTCCACAAGAGCTTTTATAATGTCGAGATATCCTTTTTCAGCGGCAAAATGAATCAATTCCTTCTCTCTCACCATCCATTTTTGTGAATTCTTGCTCTCCATTTCCAGAATTTTCTTCAACGCCTCCGGATGATTTCCTTCAACTGCCATCCTCAATGGAGTTTTTCCTTCATTGTTYTCTTTGTTCAAAGCCTTAATTGCTTCTATTGGATCATGCTCCATCATCATTTTCAAAAAGTCAGGTTCTCCTCGAAGCGCGACAATGTGAAATACAGTATTCAGGCGAAGATCCCTTTTGGTGACGTCACTTTTGGCCTTGATAAGTTCTTTGATCACTTCTTGACTTCCATGAACACATGCCAAAAGAAGAGGAGTCATCTGATTCATGTCTTCTGCATCCACGTTGGCTTTCAGCTTAACTAGAGCCTGGACTGCAGCGATATTGGATTTCATTGCAGCATAATGAAGAGGTGTCAGGAAGTATTCATTGGGAGAGTCAATATCCCTAGAATCCACAAAAAAATGTCATTGATCTGTTTGTAAAAAATATGGAAACTCACGATTTGGCTGCAACCAATGAATTGATTATCTTCTTAGTTGCAGAATTGTACATTCTTTCAGAATCCAGTCGATCCATCACAACCATTCCTCTTTCATTTGTGATTGAACATATATCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCCACAAGAGCTTTTATAATG</pcr_primer_p1>
		<pcr_primer_p2>TGACTTTTTGAAAATGATGATG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CTTCCACAAGAGCTTTTATAATGTCGAGATATCCTTTTTCAGCGGCAAAATGAATCAATTCCTTCTCTCTCACCATCCATTTTTGTGAATTCTTGCTCTCCATTTCCAGAATTTTCTTCAACGCCTCCGGATGATTTCCTTCAACTGCCATCCTCAATGGAGTTTTTCCTTCATTGTTCTCTTTGTTCAAAGCCTTAATTGCTTCTATTGGATCATGCTCCATCATCATTTTCAAAAAGTCA</canonical_amplicon>
		<polymorphic_amplicon>CTTCCACAAGAGCTTTTATAATGTCGAGATATCCTTTTTCAGCGGCAAAATGAATCAATTCCTTCTCTCTCACCATCCATTTTTGTGAATTCTTGCTCTCCATTTCCAGAATTTTCTTCAACGCCTCCGGATGATTTCCTTCAACTGCCATCCTCAATGGAGTTTTTCCTTCATTGTTYTCTTTGTTCAAAGCCTTAATTGCTTCTATTGGATCATGCTCCATCATCATTTTCAAAAAGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14769</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>490790</contig_pos>
        <strand>+</strand>
        <context>ATCTCACTCA[A/G]TTTCCATGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTACTCTCCACAGCCGCCGCTGCCAAAGAAATCGAGCGATCTCACTCA</left_flank>
        <right_flank>TTTCCATGTCCTCTAGAAGTGAAGTTCGCCCGGAGAGATCATATTCAACT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAATGGAGCAGCACAGCTGATGGCACATGCTTTCTTCATTCTTCTTGATTTCACATCGCTTCTGAGACAAAAAGCAGAGTTCGTGCCGCAGTTGGACAATGAAGAGGACACCAGTTACTTTGACAGTTCGTTGAAAACTTTGTAATTATGTTTTTAATTAGCAATTTTCAGCCCGAACCGATCGTTACAATCATGAGGCTGAAAGTTGTGGAGAGGAGGAAGTTGGAGGTTCTTCCGCAGCTTCTTCAATGATGTTCCATTCATTCTCCACAGCGTCTCCTCGACATTCAATCGTTTCTATTGATCCAGCACATTTGCCACATGTAAGGTTTGCGTTGTTGTAAAAAGAGAACCAAGATGTACAACTTTATTGAAAAGTTGCACCAATTCCAAACTGTCTCTAAGACTTTTCTGCCCCACCTACCATCTTCTTGAATCCAACGTTTTCAGTTACTCTCCACAGCCGCCGCTGCCAAAGAAATCGAGCGATCTCACTCAGTTTCCATGTCCTCTAGAAGTGAAGTTCGCCCGGAGAGATCATATTCAACTGGTCAAGCTCCACCAGATTTGTTCAATATTTCTGACGACCATACGAGCACTGTAAGTTGTGCAACCTCAATATCACTGATTTCGTTCATTTCACAGGCTGTGAACCTTCGAAGAAGATTCTCTGCTCAACGTCACAATGTTTCCACAACGTCTTCATCTGGCACTGGATCTGGAACATGCTTTGCGACAGCTGCATCCTCTACTGATTCTTCTATCGATGCATCCACTCTTCCAATATTCCAACCGCCATCTCGTGCTTCGATTGCAGAACGTGGATCTCGTTCCCCTCTTCCCAAGTTTTCAATTTCTTGTGAAGGAGAAGCGGGAGCTGCAACAAAGGATAATAAAGATGACGAAGATCTCAAGAACTGCACGATTGACTCGAACGCATCTTCTGATGCTGGTGCTGATGAGACAGTTCGATTCCGTCGACAAAGTTCTGGACGATCA</canonical>
            <polymorphic>TGAATGGAGCAGCACAGCTGATGGCACATGCTTTCTTCATTCTTCTTGATTTCACATCGCTTCTGAGACAAAAAGCAGAGTTCGTGCCGCAGTTGGACAATGAAGAGGACACCAGTTACTTTGACAGTTCGTTGAAAACTTTGTAATTATGTTTTTAATTAGCAATTTTCAGCCCGAACCGATCGTTACAATCATGAGGCTGAAAGTTGTGGAGAGGAGGAAGTTGGAGGTTCTTCCGCAGCTTCTTCAATGATGTTCCATTCATTCTCCACAGCGTCTCCTCGACATTCAATCGTTTCTATTGATCCAGCACATTTGCCACATGTAAGGTTTGCGTTGTTGTAAAAAGAGAACCAAGATGTACAACTTTATTGAAAAGTTGCACCAATTCCAAACTGTCTCTAAGACTTTTCTGCCCCACCTACCATCTTCTTGAATCCAACGTTTTCAGTTACTCTCCACAGCCGCCGCTGCCAAAGAAATCGAGCGATCTCACTCARTTTCCATGTCCTCTAGAAGTGAAGTTCGCCCGGAGAGATCATATTCAACTGGTCAAGCTCCACCAGATTTGTTCAATATTTCTGACGACCATACGAGCACTGTAAGTTGTGCAACCTCAATATCACTGATTTCGTTCATTTCACAGGCTGTGAACCTTCGAAGAAGATTCTCTGCTCAACGTCACAATGTTTCCACAACGTCTTCATCTGGCACTGGATCTGGAACATGCTTTGCGACAGCTGCATCCTCTACTGATTCTTCTATCGATGCATCCACTCTTCCAATATTCCAACCGCCATCTCGTGCTTCGATTGCAGAACGTGGATCTCGTTCCCCTCTTCCCAAGTTTTCAATTTCTTGTGAAGGAGAAGCGGGAGCTGCAACAAAGGATAATAAAGATGACGAAGATCTCAAGAACTGCACGATTGACTCGAACGCATCTTCTGATGCTGGTGCTGATGAGACAGTTCGATTCCGTCGACAAAGTTCTGGACGATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 339 94 63</canonical_bands>
                <polymorphic_bands>598 339 63</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGTAAAAAGAGAACCAAGATG</pcr_primer_p1>
		<pcr_primer_p2>TCGTCAGAAATATTGAACAAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTGTAAAAAGAGAACCAAGATGTACAACTTTATTGAAAAGTTGCACCAATTCCAAACTGTCTCTAAGACTTTTCTGCCCCACCTACCATCTTCTTGAATCCAACGTTTTCAGTTACTCTCCACAGCCGCCGCTGCCAAAGAAATCGAGCGATCTCACTCAGTTTCCATGTCCTCTAGAAGTGAAGTTCGCCCGGAGAGATCATATTCAACTGGTCAAGCTCCACCAGATTTGTTCAATATTTCTGACGA</canonical_amplicon>
		<polymorphic_amplicon>GTTGTAAAAAGAGAACCAAGATGTACAACTTTATTGAAAAGTTGCACCAATTCCAAACTGTCTCTAAGACTTTTCTGCCCCACCTACCATCTTCTTGAATCCAACGTTTTCAGTTACTCTCCACAGCCGCCGCTGCCAAAGAAATCGAGCGATCTCACTCARTTTCCATGTCCTCTAGAAGTGAAGTTCGCCCGGAGAGATCATATTCAACTGGTCAAGCTCCACCAGATTTGTTCAATATTTCTGACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14770</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>525658</contig_pos>
        <strand></strand>
        <context>AAGAGAGAGA[A/G]AGAAAGAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATTTTGTTTTCCGCTCTTCCTCTATCTCTCTCTTCGAAAAGAGAGAGA</left_flank>
        <right_flank>AGAAAGAATTAGGAAGAATTAGAAAGGAAAAGAGACAATTCGAATCAAAC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCGAAGATTGAAGAATAAGGCAAAGGAATGTTTTAAAAAGGTTTCAAGCGTTGATGGAAACATAAAAGAAAAGAAACAGTTTCACATGATAAATGCGAAAAAAAGGGAATTGGAGAAGTGGAAGATGGCTGGAATGCGATGCATTTCCAGTACGCAGAAGGAAATTATCAACGCTGATAAACAATTTCAAGACTATACTATAGATACGATAATTAACAAGGCATAGTTCTGGTAAAATGCACCGAAGACGCCGGAGGTAGGCCGGTTAAACAGGAAATTTCACGACTTCAGAAAAAAGGTTATTCTAGAATTTCTGAATTTGGGAGAGAGACAATGGAAACCACGTGAGATGACCCTTCGACCTAATATGAGAGACAAAGAAGTTTAAAACAGCCTTGAGGTGAGGTTCTGATGAAATGACAAGACGGACGACAGGGGAGTCAATGTCACATTTTGTTTTCCGCTCTTCCTCTATCTCTCTCTTCGAAAAGAGAGAGAAAGAAAGAATTAGGAAGAATTAGAAAGGAAAAGAGACAATTCGAATCAAACAGTATACTATACTCATTAGTCGATATTCTATTCCGGAGATACAGGAAAGGAACGAAGGGGAGTAGGTGCTGCTTTCTCATTCCGATTTGACCAGTAGCAACAGTAGCAGCTGTACATATCTGTTCTTCCCCTACGTCTGCGCCTCCGATTCCATCACCCTCTAATCCACATTTTTTCTTCTCCGGGCATCTTTTCTGTGGTTGTAAACTATACACTACCTCACTCACTCTCACTCTCTCACAAAGGCACCAACCATCCGGAAGATCAGTGAGAAAAAATGAGAGGGCAGGTTGGTAGGATAAGACATAAAAAATTAACGAGTGCGAAAGATCAGAAGCAGCAAGATGAACTATTATTCTACGGTGTCATATATGGAAATAACTATGAGCAAGACTTGCTCAGCAAGCCTTGTGCTCATAGAACCATTTTTCAAATTTCGAAATTTCGGAA</canonical>
            <polymorphic>TCCGAAGATTGAAGAATAAGGCAAAGGAATGTTTTAAAAAGGTTTCAAGCGTTGATGGAAACATAAAAGAAAAGAAACAGTTTCACATGATAAATGCGAAAAAAAGGGAATTGGAGAAGTGGAAGATGGCTGGAATGCGATGCATTTCCAGTACGCAGAAGGAAATTATCAACGCTGATAAACAATTTCAAGACTATACTATAGATACGATAATTAACAAGGCATAGTTCTGGTAAAATGCACCGAAGACGCCGGAGGTAGGCCGGTTAAACAGGAAATTTCACGACTTCAGAAAAAAGGTTATTCTAGAATTTCTGAATTTGGGAGAGAGACAATGGAAACCACGTGAGATGACCCTTCGACCTAATATGAGAGACAAAGAAGTTTAAAACAGCCTTGAGGTGAGGTTCTGATGAAATGACAAGACGGACGACAGGGGAGTCAATGTCACATTTTGTTTTCCGCTCTTCCTCTATCTCTCTCTTCGAAAAGAGAGAGARAGAAAGAATTAGGAAGAATTAGAAAGGAAAAGAGACAATTCGAATCAAACAGTATACTATACTCATTAGTCGATATTCTATTCCGGAGATACAGGAAAGGAACGAAGGGGAGTAGGTGCTGCTTTCTCATTCCGATTTGACCAGTAGCAACAGTAGCAGCTGTACATATCTGTTCTTCCCCTACGTCTGCGCCTCCGATTCCATCACCCTCTAATCCACATTTTTTCTTCTCCGGGCATCTTTTCTGTGGTTGTAAACTATACACTACCTCACTCACTCTCACTCTCTCACAAAGGCACCAACCATCCGGAAGATCAGTGAGAAAAAATGAGAGGGCAGGTTGGTAGGATAAGACATAAAAAATTAACGAGTGCGAAAGATCAGAAGCAGCAAGATGAACTATTATTCTACGGTGTCATATATGGAAATAACTATGAGCAAGACTTGCTCAGCAAGCCTTGTGCTCATAGAACCATTTTTCAAATTTCGAAATTTCGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTCTGATGAAATGACAAGAC</pcr_primer_p1>
		<pcr_primer_p2>CTACTGTTGCTACTGGTCAAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGTTCTGATGAAATGACAAGACGGACGACAGGGGAGTCAATGTCACATTTTGTTTTCCGCTCTTCCTCTATCTCTCTCTTCGAAAAGAGAGAGAAAGAAAGAATTAGGAAGAATTAGAAAGGAAAAGAGACAATTCGAATCAAACAGTATACTATACTCATTAGTCGATATTCTATTCCGGAGATACAGGAAAGGAACGAAGGGGAGTAGGTGCTGCTTTCTCATTCCGATTTGACCAGTAGCAACAGTAG</canonical_amplicon>
		<polymorphic_amplicon>GGTTCTGATGAAATGACAAGACGGACGACAGGGGAGTCAATGTCACATTTTGTTTTCCGCTCTTCCTCTATCTCTCTCTTCGAAAAGAGAGAGARAGAAAGAATTAGGAAGAATTAGAAAGGAAAAGAGACAATTCGAATCAAACAGTATACTATACTCATTAGTCGATATTCTATTCCGGAGATACAGGAAAGGAACGAAGGGGAGTAGGTGCTGCTTTCTCATTCCGATTTGACCAGTAGCAACAGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14771</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>599705</contig_pos>
        <strand>+</strand>
        <context>AGTCTCCTCC[C/G]GGTGTTTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGTGCGTGTGTGTCCTTCATGCTTTTGCCGCTATTTTACAAGTCTCCTCC</left_flank>
        <right_flank>GGTGTTTTTTGGACGAGAAACACTGCAAAATGTTATGCGGGAGTGTATGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCGTGGAGACTTCCAAATAAATGTGGGGAATATGATATTGAATTGCTCTCATCTTCTCGGCACGACGTTGTTTCACACACACAAGCACTGGTTGTGTCATTTAGGTCGATGAGCAGAATGGTGCGGCACCACTCCAACGAAAACCGCCAAATGTGTCCGTATGTCTCAAAAGCGATTCCATTATGCAACGATGCATTGGAGAAGAAAACGAGAAGAAGAAGAAGAAGCGCATCCATTTTTCACTATCTTTGTGCTTCAGGGTTCCGATGACCTCTCGTATTTCATCCGAAAAAAGTATATTCCTGTTTCATCTCATCTTCAATTCAGCACTTAATTAGAATTCTCATCTTTTTTTCTTTTTTTTCCCATCATTTTCATAGGAGTTAAAATAAAATAGAAAGAGTAACAGAGGAAAAAAGAACATCAGTGTGTGGAGCAGCATTGAGCATGTGCGTGTGTGTCCTTCATGCTTTTGCCGCTATTTTACAAGTCTCCTCCGGGTGTTTTTTGGACGAGAAACACTGCAAAATGTTATGCGGGAGTGTATGTGTGAGAGAAGAGTAGGTCGAAGCAGAACGACTCAAGAATTTTCATTTCGGTTCAATTTTTCTCTTCCATATGTTCTTTGCGTACTTCGAGATTTTTTTTAGTGATACTTTGAAACTATCAAAAAGGGCATTAAAATTGTTCATCACTACAGTACCTTGTTAGCTTAGCAACCAGCAAACCATATCTTTTTAATGAACCATCTTCTTTCTCATAAATCATTAAAAGATTCTCTGGCGTTCTAGGAATAGTTCAAAGACATGTACGCCTTCAAATCCTAAATCATTTTTCATTCCTATAAAAACTCTGCTCCTTTTCATTGGTAATACCAATAATGACTTCCGAGAATAGAAACGGAAGTATCATTGCTGAGAAAAAGACACCAGAAGAGAAGGCTCTTTGCCAATATTGCGACACATAAAAGGGTCCTTTTTTTGTTTTCCAATTCCTCCA</canonical>
            <polymorphic>GTCGTGGAGACTTCCAAATAAATGTGGGGAATATGATATTGAATTGCTCTCATCTTCTCGGCACGACGTTGTTTCACACACACAAGCACTGGTTGTGTCATTTAGGTCGATGAGCAGAATGGTGCGGCACCACTCCAACGAAAACCGCCAAATGTGTCCGTATGTCTCAAAAGCGATTCCATTATGCAACGATGCATTGGAGAAGAAAACGAGAAGAAGAAGAAGAAGCGCATCCATTTTTCACTATCTTTGTGCTTCAGGGTTCCGATGACCTCTCGTATTTCATCCGAAAAAAGTATATTCCTGTTTCATCTCATCTTCAATTCAGCACTTAATTAGAATTCTCATCTTTTTTTCTTTTTTTTCCCATCATTTTCATAGGAGTTAAAATAAAATAGAAAGAGTAACAGAGGAAAAAAGAACATCAGTGTGTGGAGCAGCATTGAGCATGTGCGTGTGTGTCCTTCATGCTTTTGCCGCTATTTTACAAGTCTCCTCCSGGTGTTTTTTGGACGAGAAACACTGCAAAATGTTATGCGGGAGTGTATGTGTGAGAGAAGAGTAGGTCGAAGCAGAACGACTCAAGAATTTTCATTTCGGTTCAATTTTTCTCTTCCATATGTTCTTTGCGTACTTCGAGATTTTTTTTAGTGATACTTTGAAACTATCAAAAAGGGCATTAAAATTGTTCATCACTACAGTACCTTGTTAGCTTAGCAACCAGCAAACCATATCTTTTTAATGAACCATCTTCTTTCTCATAAATCATTAAAAGATTCTCTGGCGTTCTAGGAATAGTTCAAAGACATGTACGCCTTCAAATCCTAAATCATTTTTCATTCCTATAAAAACTCTGCTCCTTTTCATTGGTAATACCAATAATGACTTCCGAGAATAGAAACGGAAGTATCATTGCTGAGAAAAAGACACCAGAAGAGAAGGCTCTTTGCCAATATTGCGACACATAAAAGGGTCCTTTTTTTGTTTTCCAATTCCTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCATCTTCAATTCAGCACTTA</pcr_primer_p1>
		<pcr_primer_p2>CTCTTCTCTCACACATACACTCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCATCTTCAATTCAGCACTTAATTAGAATTCTCATCTTTTTTTCTTTTTTTTCCCATCATTTTCATAGGAGTTAAAATAAAATAGAAAGAGTAACAGAGGAAAAAAGAACATCAGTGTGTGGAGCAGCATTGAGCATGTGCGTGTGTGTCCTTCATGCTTTTGCCGCTATTTTACAAGTCTCCTCCGGGTGTTTTTTGGACGAGAAACACTGCAAAATGTTATGCGGGAGTGTATGTGTGAGAGAAGAG</canonical_amplicon>
		<polymorphic_amplicon>CTCATCTTCAATTCAGCACTTAATTAGAATTCTCATCTTTTTTTCTTTTTTTTCCCATCATTTTCATAGGAGTTAAAATAAAATAGAAAGAGTAACAGAGGAAAAAAGAACATCAGTGTGTGGAGCAGCATTGAGCATGTGCGTGTGTGTCCTTCATGCTTTTGCCGCTATTTTACAAGTCTCCTCCSGGTGTTTTTTGGACGAGAAACACTGCAAAATGTTATGCGGGAGTGTATGTGTGAGAGAAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14772</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>614982</contig_pos>
        <strand>+</strand>
        <context>ATTCGTTTTT[G/T]AAGTATCCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAAGGTGCCGGAGAAAGTTTCAAAGGGGCACATGAATTGGATTCGTTTTT</left_flank>
        <right_flank>AAGTATCCAAGTTGGCAAACGCATTTGTAACCAGTTGCCGTATTGACACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTCTCGACTTCCGCTTCCCTTCAAAGAATCAATTGGAGAGCAAGCAAAAATGGAAAAATGTGACTGCAGCCATCAATAGGAACATGACAACGGCCGTGGTTTCCCGTCGTTCTCTGCCCCGTTAACTTTTTTCTCTTCCCCTTTTATTTCCTTCCTTTTATTTCCTTTTCTCATTCTACGGTTTTTTCTCTTACTTCCGAGCTGTTCACCCAAACCCCTTTCTGTGCTTAATGGTATACCATAGGTCTCACAATACCCTTTGCTTTAAGTCTGTTCTGACCAATACTGTCGATTTCACTTGTTTATGTGTCACTACTGCTTCTTCTCTTTTAGATTGTATTGTCCCGACATATTTCAAATATTTATTTGGCTCTTTTTTAGAAGTATGACATAAACTTAGTTCTAATTCAAAGATCTTCCATACTCTCAGAGAGTGCGAATCCATGATAAGGTGCCGGAGAAAGTTTCAAAGGGGCACATGAATTGGATTCGTTTTTTAAGTATCCAAGTTGGCAAACGCATTTGTAACCAGTTGCCGTATTGACACATTCCTGACCAAAGTCTCGACAAAGTGATTGTTTTGTACATGGGTTGTGATGAACACATCGGCCGATATCTGGACGGTAGATGGTTCCGGGTTTCTGAAAAAAATTCAACTAAAAACTAGTATACGAAATGAGGATTTGGAGACAGAAAAATTAGGAATGAAATCCGGAATAAAATTTTATCGGAATCCAGAATCCGGATAACGTAAAAACTCTGATAGGTAGTGCCAGGGAGGAAAACAAATAAGAAACGGCTGTAATATGTAGTTCAGGATTCACCTTTTTGCAAAAATACTTTGGAAACGGTCTCGTTGTCCCGAACTTTTCAAAAATTAATTTTTAAACATTTTTTCGGTTAATTTTCGGAGTTCTCATCCCTGGTACCACCCTCCGATAGGACGCCCCTAAGCCGTCAACTTTGACCCCTTATATCTCGGTTCCTGTGAAAGATAT</canonical>
            <polymorphic>AATTCTCGACTTCCGCTTCCCTTCAAAGAATCAATTGGAGAGCAAGCAAAAATGGAAAAATGTGACTGCAGCCATCAATAGGAACATGACAACGGCCGTGGTTTCCCGTCGTTCTCTGCCCCGTTAACTTTTTTCTCTTCCCCTTTTATTTCCTTCCTTTTATTTCCTTTTCTCATTCTACGGTTTTTTCTCTTACTTCCGAGCTGTTCACCCAAACCCCTTTCTGTGCTTAATGGTATACCATAGGTCTCACAATACCCTTTGCTTTAAGTCTGTTCTGACCAATACTGTCGATTTCACTTGTTTATGTGTCACTACTGCTTCTTCTCTTTTAGATTGTATTGTCCCGACATATTTCAAATATTTATTTGGCTCTTTTTTAGAAGTATGACATAAACTTAGTTCTAATTCAAAGATCTTCCATACTCTCAGAGAGTGCGAATCCATGATAAGGTGCCGGAGAAAGTTTCAAAGGGGCACATGAATTGGATTCGTTTTTKAAGTATCCAAGTTGGCAAACGCATTTGTAACCAGTTGCCGTATTGACACATTCCTGACCAAAGTCTCGACAAAGTGATTGTTTTGTACATGGGTTGTGATGAACACATCGGCCGATATCTGGACGGTAGATGGTTCCGGGTTTCTGAAAAAAATTCAACTAAAAACTAGTATACGAAATGAGGATTTGGAGACAGAAAAATTAGGAATGAAATCCGGAATAAAATTTTATCGGAATCCAGAATCCGGATAACGTAAAAACTCTGATAGGTAGTGCCAGGGAGGAAAACAAATAAGAAACGGCTGTAATATGTAGTTCAGGATTCACCTTTTTGCAAAAATACTTTGGAAACGGTCTCGTTGTCCCGAACTTTTCAAAAATTAATTTTTAAACATTTTTTCGGTTAATTTTCGGAGTTCTCATCCCTGGTACCACCCTCCGATAGGACGCCCCTAAGCCGTCAACTTTGACCCCTTATATCTCGGTTCCTGTGAAAGATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>381 232 124 106 97 37 16 7</canonical_bands>
                <polymorphic_bands>613 124 106 97 37 16 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTCACTACTGCTTCTTCTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TGGTCAGGAATGTGTCAATAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGTCACTACTGCTTCTTCTCTTTTAGATTGTATTGTCCCGACATATTTCAAATATTTATTTGGCTCTTTTTTAGAAGTATGACATAAACTTAGTTCTAATTCAAAGATCTTCCATACTCTCAGAGAGTGCGAATCCATGATAAGGTGCCGGAGAAAGTTTCAAAGGGGCACATGAATTGGATTCGTTTTTTAAGTATCCAAGTTGGCAAACGCATTTGTAACCAGTTGCCGTATTGACACATTCCTGACCA</canonical_amplicon>
		<polymorphic_amplicon>TGTCACTACTGCTTCTTCTCTTTTAGATTGTATTGTCCCGACATATTTCAAATATTTATTTGGCTCTTTTTTAGAAGTATGACATAAACTTAGTTCTAATTCAAAGATCTTCCATACTCTCAGAGAGTGCGAATCCATGATAAGGTGCCGGAGAAAGTTTCAAAGGGGCACATGAATTGGATTCGTTTTTKAAGTATCCAAGTTGGCAAACGCATTTGTAACCAGTTGCCGTATTGACACATTCCTGACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14773</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>634926</contig_pos>
        <strand>+</strand>
        <context>CCTTCATGAT[A/G]AAAACTAGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTTGTGGTCGATGAAACCAGCCTTCTCGTTGCCATCTTCCTTCATGAT</left_flank>
        <right_flank>AAAACTAGTGCCAAATGCTTATTGACTTGACGAAGGAACATGATTTGTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCGAAAAACGTTTTCGGGAAGTTCTGTTTCCGAAAATTTTTCCGAAATTATTGTTCGGGAAAAATCGGGACGTTAATTTTTCAATGAATTTTTGCCCATTTTTCTCAATTTATGTTGAGTTTCGTCGTATATCTTTACGTTTCTCCAAAGTGTCCATTGAATTCTTTTGAAAAACTATTCAAATAGCAAAAAATAGTTGAAAATTTGAGAAATCAATTTTCAAGGAATCCGGGATGAAAGACAGCGCAGAATCTCTGAATATTCAGTTTGTTACTGTCTACGTCGACTTTTCAATCAAACTTCTTAGACTCTTTCATTGTTTCTCGAAATACAAACGTTGAAAAAGGATATTTATTTGACATGATTATTTCAAAAGTTGGAAAATTAGAAGTTGACGCCTCTGTTTTTTACTTTGAACACTTGCTCGATACCAGCCTTAAATACACCAAAGTTGTGGTCGATGAAACCAGCCTTCTCGTTGCCATCTTCCTTCATGATAAAAACTAGTGCCAAATGCTTATTGACTTGACGAAGGAACATGATTTGTTCAGATTTGAGGCGAATTACAGACGACGACCGCTCATCATAATTAGAACCGTTCTCGGACACCCTGAATTCATGTGTTTTTGCTTTTATGAGGACTGAAATCAGCTCACCCATATATGGACGACAAGTCCAGTGTAACATCGATCATATCACAGCAGAGTTCGTAAATACTCATTTCAACGGGCTCCGAGTCAGTGGCAATGTAGATTTTGGAGAGGATATCGAACAAAAACGACTTTGTGACTTTCGAGCTCTGAAATTGAATCTTCTATTAGAACTTTTACGGTAAACGAGATATTAATTTTGAATTTCAAACTAACGTTGTTGAAAACATCTAGAAGACGCTCGAGAGTTGGCAATTGCTTAACGAGATTCTGAACGACTTTCGAAAATGCTTCGAAGATGGAATGATCATAAATTGATGTCAAATGATAGGTGACTTGTAGATCTACG</canonical>
            <polymorphic>CCCGAAAAACGTTTTCGGGAAGTTCTGTTTCCGAAAATTTTTCCGAAATTATTGTTCGGGAAAAATCGGGACGTTAATTTTTCAATGAATTTTTGCCCATTTTTCTCAATTTATGTTGAGTTTCGTCGTATATCTTTACGTTTCTCCAAAGTGTCCATTGAATTCTTTTGAAAAACTATTCAAATAGCAAAAAATAGTTGAAAATTTGAGAAATCAATTTTCAAGGAATCCGGGATGAAAGACAGCGCAGAATCTCTGAATATTCAGTTTGTTACTGTCTACGTCGACTTTTCAATCAAACTTCTTAGACTCTTTCATTGTTTCTCGAAATACAAACGTTGAAAAAGGATATTTATTTGACATGATTATTTCAAAAGTTGGAAAATTAGAAGTTGACGCCTCTGTTTTTTACTTTGAACACTTGCTCGATACCAGCCTTAAATACACCAAAGTTGTGGTCGATGAAACCAGCCTTCTCGTTGCCATCTTCCTTCATGATRAAAACTAGTGCCAAATGCTTATTGACTTGACGAAGGAACATGATTTGTTCAGATTTGAGGCGAATTACAGACGACGACCGCTCATCATAATTAGAACCGTTCTCGGACACCCTGAATTCATGTGTTTTTGCTTTTATGAGGACTGAAATCAGCTCACCCATATATGGACGACAAGTCCAGTGTAACATCGATCATATCACAGCAGAGTTCGTAAATACTCATTTCAACGGGCTCCGAGTCAGTGGCAATGTAGATTTTGGAGAGGATATCGAACAAAAACGACTTTGTGACTTTCGAGCTCTGAAATTGAATCTTCTATTAGAACTTTTACGGTAAACGAGATATTAATTTTGAATTTCAAACTAACGTTGTTGAAAACATCTAGAAGACGCTCGAGAGTTGGCAATTGCTTAACGAGATTCTGAACGACTTTCGAAAATGCTTCGAAGATGGAATGATCATAAATTGATGTCAAATGATAGGTGACTTGTAGATCTACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTTTGAACACTTGCTCGATA</pcr_primer_p1>
		<pcr_primer_p2>AGCTGATTTCAGTCCTCATAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TACTTTGAACACTTGCTCGATACCAGCCTTAAATACACCAAAGTTGTGGTCGATGAAACCAGCCTTCTCGTTGCCATCTTCCTTCATGATAAAAACTAGTGCCAAATGCTTATTGACTTGACGAAGGAACATGATTTGTTCAGATTTGAGGCGAATTACAGACGACGACCGCTCATCATAATTAGAACCGTTCTCGGACACCCTGAATTCATGTGTTTTTGCTTTTATGAGGACTGAAATCAGCT</canonical_amplicon>
		<polymorphic_amplicon>TACTTTGAACACTTGCTCGATACCAGCCTTAAATACACCAAAGTTGTGGTCGATGAAACCAGCCTTCTCGTTGCCATCTTCCTTCATGATRAAAACTAGTGCCAAATGCTTATTGACTTGACGAAGGAACATGATTTGTTCAGATTTGAGGCGAATTACAGACGACGACCGCTCATCATAATTAGAACCGTTCTCGGACACCCTGAATTCATGTGTTTTTGCTTTTATGAGGACTGAAATCAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14774</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>635047</contig_pos>
        <strand>+</strand>
        <context>CCTGAATTCA[C/T]GTGTTTTTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGACGACCGCTCATCATAATTAGAACCGTTCTCGGACACCCTGAATTCA</left_flank>
        <right_flank>GTGTTTTTGCTTTTATGAGGACTGAAATCAGCTCACCCATATATGGACGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGTCGTATATCTTTACGTTTCTCCAAAGTGTCCATTGAATTCTTTTGAAAAACTATTCAAATAGCAAAAAATAGTTGAAAATTTGAGAAATCAATTTTCAAGGAATCCGGGATGAAAGACAGCGCAGAATCTCTGAATATTCAGTTTGTTACTGTCTACGTCGACTTTTCAATCAAACTTCTTAGACTCTTTCATTGTTTCTCGAAATACAAACGTTGAAAAAGGATATTTATTTGACATGATTATTTCAAAAGTTGGAAAATTAGAAGTTGACGCCTCTGTTTTTTACTTTGAACACTTGCTCGATACCAGCCTTAAATACACCAAAGTTGTGGTCGATGAAACCAGCCTTCTCGTTGCCATCTTCCTTCATGATAAAAACTAGTGCCAAATGCTTATTGACTTGACGAAGGAACATGATTTGTTCAGATTTGAGGCGAATTACAGACGACGACCGCTCATCATAATTAGAACCGTTCTCGGACACCCTGAATTCATGTGTTTTTGCTTTTATGAGGACTGAAATCAGCTCACCCATATATGGACGACAAGTCCAGTGTAACATCGATCATATCACAGCAGAGTTCGTAAATACTCATTTCAACGGGCTCCGAGTCAGTGGCAATGTAGATTTTGGAGAGGATATCGAACAAAAACGACTTTGTGACTTTCGAGCTCTGAAATTGAATCTTCTATTAGAACTTTTACGGTAAACGAGATATTAATTTTGAATTTCAAACTAACGTTGTTGAAAACATCTAGAAGACGCTCGAGAGTTGGCAATTGCTTAACGAGATTCTGAACGACTTTCGAAAATGCTTCGAAGATGGAATGATCATAAATTGATGTCAAATGATAGGTGACTTGTAGATCTACGTCAATTTGATCTTTAATAGTTTCCTTGACTTGATGGTATATGTTGAACTTGGTCTCAACACGAGCCTCCTCCGTTAGTCCGTCAGCCTTGTGCACGAAAACTTCGAACTTGATGTTCTGAT</canonical>
            <polymorphic>TTCGTCGTATATCTTTACGTTTCTCCAAAGTGTCCATTGAATTCTTTTGAAAAACTATTCAAATAGCAAAAAATAGTTGAAAATTTGAGAAATCAATTTTCAAGGAATCCGGGATGAAAGACAGCGCAGAATCTCTGAATATTCAGTTTGTTACTGTCTACGTCGACTTTTCAATCAAACTTCTTAGACTCTTTCATTGTTTCTCGAAATACAAACGTTGAAAAAGGATATTTATTTGACATGATTATTTCAAAAGTTGGAAAATTAGAAGTTGACGCCTCTGTTTTTTACTTTGAACACTTGCTCGATACCAGCCTTAAATACACCAAAGTTGTGGTCGATGAAACCAGCCTTCTCGTTGCCATCTTCCTTCATGATAAAAACTAGTGCCAAATGCTTATTGACTTGACGAAGGAACATGATTTGTTCAGATTTGAGGCGAATTACAGACGACGACCGCTCATCATAATTAGAACCGTTCTCGGACACCCTGAATTCAYGTGTTTTTGCTTTTATGAGGACTGAAATCAGCTCACCCATATATGGACGACAAGTCCAGTGTAACATCGATCATATCACAGCAGAGTTCGTAAATACTCATTTCAACGGGCTCCGAGTCAGTGGCAATGTAGATTTTGGAGAGGATATCGAACAAAAACGACTTTGTGACTTTCGAGCTCTGAAATTGAATCTTCTATTAGAACTTTTACGGTAAACGAGATATTAATTTTGAATTTCAAACTAACGTTGTTGAAAACATCTAGAAGACGCTCGAGAGTTGGCAATTGCTTAACGAGATTCTGAACGACTTTCGAAAATGCTTCGAAGATGGAATGATCATAAATTGATGTCAAATGATAGGTGACTTGTAGATCTACGTCAATTTGATCTTTAATAGTTTCCTTGACTTGATGGTATATGTTGAACTTGGTCTCAACACGAGCCTCCTCCGTTAGTCCGTCAGCCTTGTGCACGAAAACTTCGAACTTGATGTTCTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 240 133 80 45</canonical_bands>
                <polymorphic_bands>582 240 133 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGAACATGATTTGTTCAGATT</pcr_primer_p1>
		<pcr_primer_p2>GTCGTTTTTGTTCGATATCCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGAACATGATTTGTTCAGATTTGAGGCGAATTACAGACGACGACCGCTCATCATAATTAGAACCGTTCTCGGACACCCTGAATTCATGTGTTTTTGCTTTTATGAGGACTGAAATCAGCTCACCCATATATGGACGACAAGTCCAGTGTAACATCGATCATATCACAGCAGAGTTCGTAAATACTCATTTCAACGGGCTCCGAGTCAGTGGCAATGTAGATTTTGGAGAGGATATCGAACAAAAACGAC</canonical_amplicon>
		<polymorphic_amplicon>AGGAACATGATTTGTTCAGATTTGAGGCGAATTACAGACGACGACCGCTCATCATAATTAGAACCGTTCTCGGACACCCTGAATTCAYGTGTTTTTGCTTTTATGAGGACTGAAATCAGCTCACCCATATATGGACGACAAGTCCAGTGTAACATCGATCATATCACAGCAGAGTTCGTAAATACTCATTTCAACGGGCTCCGAGTCAGTGGCAATGTAGATTTTGGAGAGGATATCGAACAAAAACGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14775</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>637295</contig_pos>
        <strand>+</strand>
        <context>TCGAGAATGG[A/G]TCTATAGATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCTCATGCGCTCAAAACAGTTCAAGCCTACGGATGGGATTCGAGAATGG</left_flank>
        <right_flank>TCTATAGATATCCGGATGCGTTCCCTAGAGCGTTTGCTGGAATGATTGCC</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAAAATTCAACAAACACCGATAAATCGCCAAGCGCTAGTTCAAAAAACTGGAGGACAACGACTCCCTCTCTTTCTTCAACAGAACCTTCCTCTGATATCATTCACAATGTGAGTCTTGTAATGTAACTTTAAAAACTGTTAATCTTTTAGGTTCAAGAGAAATGTAACATAGGGTCTCGACGAAATAAAACGGATAAGAAACCGGTAACGACAAGAGGTCCCGGTTTTCCTAAGAAAGAAACTCCGTCGTCTGGTCGCAACGATGATTCTGAGAACCACAACAAGGCCCTGTTAGAGAAGGTATGTCATGAATTCACGAAGCTGAATAGAGGACTCACTGCGGAGTCCCGGTCATAAAGCTGAACATTTTTAAATCTGTTTTTCAGTTTCACTGCACAGACATGCCCTACATTGACTCACATTGTCACACCGACTTCATCTACACTATGCTCATGCGCTCAAAACAGTTCAAGCCTACGGATGGGATTCGAGAATGGATCTATAGATATCCGGATGCGTTCCCTAGAGCGTTTGCTGGAATGATTGCCAACTTTATCAAGCCTGAATTATTTGTTAACTGCGCCGATAATGAGGAGTATGATTTCCGATGGATTCTGGAACAGCTACGATCGAACTACTATTTAGGAACTACTTGGGGATGTCATCCACATCATGCAGAAAAGTTAGTAAGCTGAATTTATTGCAAACATTGTTCCATGAGACTGGAAACCGCGAGAAAAGCAAAAAAGAGTGATTCGCATAGTCGCTTGTACTCTAATCTTGCTACTGATAACGAAAAGGTTGAGTCTCTATTATGCTTATCTGAGAAAAAAAAGGTCGAGACGCAGAGAAAATGTGTCTGCGTCTCCACCGTTTGTGTGCTATTTAGGCTATCCGCTTCGATATCGCTACCGTATTCAGACTGCAAAAAATACTCTCTAACCTTTTTTTCCTCAGACAAGCATAATATGTTAAACCGAAAAATTCAGCAGAGCAAA</canonical>
            <polymorphic>TCAAAAATTCAACAAACACCGATAAATCGCCAAGCGCTAGTTCAAAAAACTGGAGGACAACGACTCCCTCTCTTTCTTCAACAGAACCTTCCTCTGATATCATTCACAATGTGAGTCTTGTAATGTAACTTTAAAAACTGTTAATCTTTTAGGTTCAAGAGAAATGTAACATAGGGTCTCGACGAAATAAAACGGATAAGAAACCGGTAACGACAAGAGGTCCCGGTTTTCCTAAGAAAGAAACTCCGTCGTCTGGTCGCAACGATGATTCTGAGAACCACAACAAGGCCCTGTTAGAGAAGGTATGTCATGAATTCACGAAGCTGAATAGAGGACTCACTGCGGAGTCCCGGTCATAAAGCTGAACATTTTTAAATCTGTTTTTCAGTTTCACTGCACAGACATGCCCTACATTGACTCACATTGTCACACCGACTTCATCTACACTATGCTCATGCGCTCAAAACAGTTCAAGCCTACGGATGGGATTCGAGAATGGRTCTATAGATATCCGGATGCGTTCCCTAGAGCGTTTGCTGGAATGATTGCCAACTTTATCAAGCCTGAATTATTTGTTAACTGCGCCGATAATGAGGAGTATGATTTCCGATGGATTCTGGAACAGCTACGATCGAACTACTATTTAGGAACTACTTGGGGATGTCATCCACATCATGCAGAAAAGTTAGTAAGCTGAATTTATTGCAAACATTGTTCCATGAGACTGGAAACCGCGAGAAAAGCAAAAAAGAGTGATTCGCATAGTCGCTTGTACTCTAATCTTGCTACTGATAACGAAAAGGTTGAGTCTCTATTATGCTTATCTGAGAAAAAAAAGGTCGAGACGCAGAGAAAATGTGTCTGCGTCTCCACCGTTTGTGTGCTATTTAGGCTATCCGCTTCGATATCGCTACCGTATTCAGACTGCAAAAAATACTCTCTAACCTTTTTTTCCTCAGACAAGCATAATATGTTAAACCGAAAAATTCAGCAGAGCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>498 371 131</canonical_bands>
                <polymorphic_bands>629 371</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACATTGACTCACATTGTCACAC</pcr_primer_p1>
		<pcr_primer_p2>TCCCCAAGTAGTTCCTAAATAGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TACATTGACTCACATTGTCACACCGACTTCATCTACACTATGCTCATGCGCTCAAAACAGTTCAAGCCTACGGATGGGATTCGAGAATGGATCTATAGATATCCGGATGCGTTCCCTAGAGCGTTTGCTGGAATGATTGCCAACTTTATCAAGCCTGAATTATTTGTTAACTGCGCCGATAATGAGGAGTATGATTTCCGATGGATTCTGGAACAGCTACGATCGAACTACTATTTAGGAACTACTTGGGGA</canonical_amplicon>
		<polymorphic_amplicon>TACATTGACTCACATTGTCACACCGACTTCATCTACACTATGCTCATGCGCTCAAAACAGTTCAAGCCTACGGATGGGATTCGAGAATGGRTCTATAGATATCCGGATGCGTTCCCTAGAGCGTTTGCTGGAATGATTGCCAACTTTATCAAGCCTGAATTATTTGTTAACTGCGCCGATAATGAGGAGTATGATTTCCGATGGATTCTGGAACAGCTACGATCGAACTACTATTTAGGAACTACTTGGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14776</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>647365</contig_pos>
        <strand>+</strand>
        <context>AGTCCAATCC[A/T]ACAATATCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TACTCAGCCCACCAGAGCATCAAATGAGACAATCCGTGGTAGTCCAATCC</left_flank>
        <right_flank>ACAATATCTTGCCAGTTGTAGTAGTTACTGTAGATTCCAACTTGTTGTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCTAAAAATCAGCCTTTTTAGTCGAAGTGTTAGTTTTTTTTTTCTTCAAGTTTTTCCAAACATTCCTTCTAGAATACAGACGGTCTAAAAATTGAGAAATTTTATACGATATAAAAATGGCTGAGCGTCCGGCAGATGACAACGAGACAATCAACGATGCAAAATCGAATTGGGGAGCCGTCGTTTGATTTTTTGTGCCGATTTTTCTTTTTCGAAATAAACACTTTTTTATTAAACAATGACTCGTATATTTTGGGTACTATAAAATAATTTTTCAATTAAAAATAGCAAAAGTTTATTATGTTATTTACACGACACAATTACGGAACATAGTTCAAATCAACACTGACTCCACATGGTCCAGTCTCAGTTCCATGCCATTGATGAATAGTTGGACGAGTCCATCCTCCAAAAGCTCTGAACTTTCCAAAGTCCTTCTCTCCATCGTACTCAGCCCACCAGAGCATCAAATGAGACAATCCGTGGTAGTCCAATCCTACAATATCTTGCCAGTTGTAGTAGTTACTGTAGATTCCAACTTGTTGTTTCAAAGCTTCAGCCTCCTTGACCATTGCCTCAATGAATGCACGGTTGCTTCCATGATTGGCTGGCCAGGCGAGACGTTCAATGTCAAGCCAGAGGGTGGAGACGTGAGTTCCAGCACCCTTCAAAGCATCCAAAGTTTGCTTGACTTGGTTGGCAGCAGATGGGCAATGAGTGGCCAAGCATGGGAAGATGTATCCATCAGCGTCCGTGATTCCAGCTGAAATGTTATAATCAGAAGTGAGAATTTTTGAAATCAGTGTAGTCGATTGCTTAAAAATGCTTTTTATACTCACCAGCTCTGGCATTCTTGACATTTTGGATTCCAGTATGATCAAGAGTTCCAACTGAAGTGAAGACTCTTGGAATCACAAAAGAGTATCCGTCCTTCTTAATACATTGGAATGTAGCAACAGAAACCGGTTGAATGAAGTCAATTCCGTTTCTGGCAGCTG</canonical>
            <polymorphic>GTTCTAAAAATCAGCCTTTTTAGTCGAAGTGTTAGTTTTTTTTTTCTTCAAGTTTTTCCAAACATTCCTTCTAGAATACAGACGGTCTAAAAATTGAGAAATTTTATACGATATAAAAATGGCTGAGCGTCCGGCAGATGACAACGAGACAATCAACGATGCAAAATCGAATTGGGGAGCCGTCGTTTGATTTTTTGTGCCGATTTTTCTTTTTCGAAATAAACACTTTTTTATTAAACAATGACTCGTATATTTTGGGTACTATAAAATAATTTTTCAATTAAAAATAGCAAAAGTTTATTATGTTATTTACACGACACAATTACGGAACATAGTTCAAATCAACACTGACTCCACATGGTCCAGTCTCAGTTCCATGCCATTGATGAATAGTTGGACGAGTCCATCCTCCAAAAGCTCTGAACTTTCCAAAGTCCTTCTCTCCATCGTACTCAGCCCACCAGAGCATCAAATGAGACAATCCGTGGTAGTCCAATCCWACAATATCTTGCCAGTTGTAGTAGTTACTGTAGATTCCAACTTGTTGTTTCAAAGCTTCAGCCTCCTTGACCATTGCCTCAATGAATGCACGGTTGCTTCCATGATTGGCTGGCCAGGCGAGACGTTCAATGTCAAGCCAGAGGGTGGAGACGTGAGTTCCAGCACCCTTCAAAGCATCCAAAGTTTGCTTGACTTGGTTGGCAGCAGATGGGCAATGAGTGGCCAAGCATGGGAAGATGTATCCATCAGCGTCCGTGATTCCAGCTGAAATGTTATAATCAGAAGTGAGAATTTTTGAAATCAGTGTAGTCGATTGCTTAAAAATGCTTTTTATACTCACCAGCTCTGGCATTCTTGACATTTTGGATTCCAGTATGATCAAGAGTTCCAACTGAAGTGAAGACTCTTGGAATCACAAAAGAGTATCCGTCCTTCTTAATACATTGGAATGTAGCAACAGAAACCGGTTGAATGAAGTCAATTCCGTTTCTGGCAGCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAATTACGGAACATAGTTCAAA</pcr_primer_p1>
		<pcr_primer_p2>CTGAAGCTTTGAAACAACAAG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ACAATTACGGAACATAGTTCAAATCAACACTGACTCCACATGGTCCAGTCTCAGTTCCATGCCATTGATGAATAGTTGGACGAGTCCATCCTCCAAAAGCTCTGAACTTTCCAAAGTCCTTCTCTCCATCGTACTCAGCCCACCAGAGCATCAAATGAGACAATCCGTGGTAGTCCAATCCTACAATATCTTGCCAGTTGTAGTAGTTACTGTAGATTCCAACTTGTTGTTTCAAAGCTTCAG</canonical_amplicon>
		<polymorphic_amplicon>ACAATTACGGAACATAGTTCAAATCAACACTGACTCCACATGGTCCAGTCTCAGTTCCATGCCATTGATGAATAGTTGGACGAGTCCATCCTCCAAAAGCTCTGAACTTTCCAAAGTCCTTCTCTCCATCGTACTCAGCCCACCAGAGCATCAAATGAGACAATCCGTGGTAGTCCAATCCWACAATATCTTGCCAGTTGTAGTAGTTACTGTAGATTCCAACTTGTTGTTTCAAAGCTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14777</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>647531</contig_pos>
        <strand>+</strand>
        <context>AGTTCCAGCA[C/G]CCTTCAAAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGGCGAGACGTTCAATGTCAAGCCAGAGGGTGGAGACGTGAGTTCCAGCA</left_flank>
        <right_flank>CCTTCAAAGCATCCAAAGTTTGCTTGACTTGGTTGGCAGCAGATGGGCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAATTGGGGAGCCGTCGTTTGATTTTTTGTGCCGATTTTTCTTTTTCGAAATAAACACTTTTTTATTAAACAATGACTCGTATATTTTGGGTACTATAAAATAATTTTTCAATTAAAAATAGCAAAAGTTTATTATGTTATTTACACGACACAATTACGGAACATAGTTCAAATCAACACTGACTCCACATGGTCCAGTCTCAGTTCCATGCCATTGATGAATAGTTGGACGAGTCCATCCTCCAAAAGCTCTGAACTTTCCAAAGTCCTTCTCTCCATCGTACTCAGCCCACCAGAGCATCAAATGAGACAATCCGTGGTAGTCCAATCCTACAATATCTTGCCAGTTGTAGTAGTTACTGTAGATTCCAACTTGTTGTTTCAAAGCTTCAGCCTCCTTGACCATTGCCTCAATGAATGCACGGTTGCTTCCATGATTGGCTGGCCAGGCGAGACGTTCAATGTCAAGCCAGAGGGTGGAGACGTGAGTTCCAGCACCCTTCAAAGCATCCAAAGTTTGCTTGACTTGGTTGGCAGCAGATGGGCAATGAGTGGCCAAGCATGGGAAGATGTATCCATCAGCGTCCGTGATTCCAGCTGAAATGTTATAATCAGAAGTGAGAATTTTTGAAATCAGTGTAGTCGATTGCTTAAAAATGCTTTTTATACTCACCAGCTCTGGCATTCTTGACATTTTGGATTCCAGTATGATCAAGAGTTCCAACTGAAGTGAAGACTCTTGGAATCACAAAAGAGTATCCGTCCTTCTTAATACATTGGAATGTAGCAACAGAAACCGGTTGAATGAAGTCAATTCCGTTTCTGGCAGCTGCAGCAACTCCAGCCAGAACAAGCAGGGAAACGAGAAGTTTCATCTCTTCCGAGCTCTTCCGATGCGTGCTCTTCTGTCTTTATTTATACCAGCTCCTATACCGGAGATTCTAATTTTATGACTGTTACGTAAGCAGGGGAAATCATGCCAAAAACTTCAAAAACCC</canonical>
            <polymorphic>TCGAATTGGGGAGCCGTCGTTTGATTTTTTGTGCCGATTTTTCTTTTTCGAAATAAACACTTTTTTATTAAACAATGACTCGTATATTTTGGGTACTATAAAATAATTTTTCAATTAAAAATAGCAAAAGTTTATTATGTTATTTACACGACACAATTACGGAACATAGTTCAAATCAACACTGACTCCACATGGTCCAGTCTCAGTTCCATGCCATTGATGAATAGTTGGACGAGTCCATCCTCCAAAAGCTCTGAACTTTCCAAAGTCCTTCTCTCCATCGTACTCAGCCCACCAGAGCATCAAATGAGACAATCCGTGGTAGTCCAATCCTACAATATCTTGCCAGTTGTAGTAGTTACTGTAGATTCCAACTTGTTGTTTCAAAGCTTCAGCCTCCTTGACCATTGCCTCAATGAATGCACGGTTGCTTCCATGATTGGCTGGCCAGGCGAGACGTTCAATGTCAAGCCAGAGGGTGGAGACGTGAGTTCCAGCASCCTTCAAAGCATCCAAAGTTTGCTTGACTTGGTTGGCAGCAGATGGGCAATGAGTGGCCAAGCATGGGAAGATGTATCCATCAGCGTCCGTGATTCCAGCTGAAATGTTATAATCAGAAGTGAGAATTTTTGAAATCAGTGTAGTCGATTGCTTAAAAATGCTTTTTATACTCACCAGCTCTGGCATTCTTGACATTTTGGATTCCAGTATGATCAAGAGTTCCAACTGAAGTGAAGACTCTTGGAATCACAAAAGAGTATCCGTCCTTCTTAATACATTGGAATGTAGCAACAGAAACCGGTTGAATGAAGTCAATTCCGTTTCTGGCAGCTGCAGCAACTCCAGCCAGAACAAGCAGGGAAACGAGAAGTTTCATCTCTTCCGAGCTCTTCCGATGCGTGCTCTTCTGTCTTTATTTATACCAGCTCCTATACCGGAGATTCTAATTTTATGACTGTTACGTAAGCAGGGGAAATCATGCCAAAAACTTCAAAAACCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>152 104 103 98 89 60 57 57 36 33 33 30 28 27 26 19 16 10 9 8 5</canonical_bands>
                <polymorphic_bands>152 104 103 98 89 67 60 57 36 33 33 30 28 27 26 19 16 9 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTGTTGTTTCAAAGCTTCAG</pcr_primer_p1>
		<pcr_primer_p2>TCTCACTTCTGATTATAACATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTTGTTGTTTCAAAGCTTCAGCCTCCTTGACCATTGCCTCAATGAATGCACGGTTGCTTCCATGATTGGCTGGCCAGGCGAGACGTTCAATGTCAAGCCAGAGGGTGGAGACGTGAGTTCCAGCACCCTTCAAAGCATCCAAAGTTTGCTTGACTTGGTTGGCAGCAGATGGGCAATGAGTGGCCAAGCATGGGAAGATGTATCCATCAGCGTCCGTGATTCCAGCTGAAATGTTATAATCAGAAGTGAGA</canonical_amplicon>
		<polymorphic_amplicon>CTTGTTGTTTCAAAGCTTCAGCCTCCTTGACCATTGCCTCAATGAATGCACGGTTGCTTCCATGATTGGCTGGCCAGGCGAGACGTTCAATGTCAAGCCAGAGGGTGGAGACGTGAGTTCCAGCASCCTTCAAAGCATCCAAAGTTTGCTTGACTTGGTTGGCAGCAGATGGGCAATGAGTGGCCAAGCATGGGAAGATGTATCCATCAGCGTCCGTGATTCCAGCTGAAATGTTATAATCAGAAGTGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14778</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>676444</contig_pos>
        <strand>+</strand>
        <context>GAGTTCTTTT[C/T]TATTTCGATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTGCTATTCGGAATCTTCTGTATCTTCAATGCATTTGGTGAGTTCTTTT</left_flank>
        <right_flank>TATTTCGATTTTCTCTCCCTACCGCCTATAAGTAATCCCACCATTCTCAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGGACGAATCGATGAGCGAACGAACAAAAGTGGAAAAACGGAATGGTTAGTCGGGTGGGCGATGGAAATGATATGTGCTTTTTCTGCATTCGATTATCGTTGACATATTTCAGGAAATCGTGGCTTGTTTGTAATGAATTGGGCTTCAAAAGCTCGGAGTGCGTTGACTCCGAGAATTTGGTTCACTAATAAAAGTGGAGAAGATGATGGAACACGAAGGAATCGGAGTGTGTGAGTTTTCTACTTTGATAGCTTCAACAAGGGAAAGAACCTATAAAACCCAAATGGATTCCAGAATCGTTCGGCCCATGGATGCAGATACCAACACATCAGAGGAAGGTTGCTGGCCTGAATTGAAAGAGTTCTGCAGGGCACATGCCGTCGAGGTTTCCCTTTTTAATGACATTTTGATATTTTATGGTTGCAGTGTACAACATTTGCTCTATTCCTGCTATTCGGAATCTTCTGTATCTTCAATGCATTTGGTGAGTTCTTTTCTATTTCGATTTTCTCTCCCTACCGCCTATAAGTAATCCCACCATTCTCAGTTTTAGGATTTCTGGGAACCAACGAGCTGAAACTTCGTTATGATCATTATGAGCAACTGGTCCGAAAGCACTGTCAATTTGTGGAAGATCGAGATTTGAATGGATCAGAAGGGAAAACTGAGCATCCAAATGCCACTTTGGTATCCTTGTTGGCTGTTGTAAGGCATGGAGATCGGTATGGATTAGTGATGGATGGAGGATGTCAAATTGCAACCGAACAAGAGTCTATGGAATTTGATAAATATTTGGCCACGATAGAGAAACAGAAAAATCTTTTCGCCATTCCGGTAAATCTTGCTGATAAAAAACTAACACCGAGTAAAGACAAATGCGCAGTCGGGATGCTGACTCCTCGAGGAGCAATCCAGGAGTTTATGATGGGACGATTTCTGTTCAGCCAGTACAAAAACACGACTTTGTTCAGTTAGTTTTTAGATGAAATCTTTTATG</canonical>
            <polymorphic>AATGGACGAATCGATGAGCGAACGAACAAAAGTGGAAAAACGGAATGGTTAGTCGGGTGGGCGATGGAAATGATATGTGCTTTTTCTGCATTCGATTATCGTTGACATATTTCAGGAAATCGTGGCTTGTTTGTAATGAATTGGGCTTCAAAAGCTCGGAGTGCGTTGACTCCGAGAATTTGGTTCACTAATAAAAGTGGAGAAGATGATGGAACACGAAGGAATCGGAGTGTGTGAGTTTTCTACTTTGATAGCTTCAACAAGGGAAAGAACCTATAAAACCCAAATGGATTCCAGAATCGTTCGGCCCATGGATGCAGATACCAACACATCAGAGGAAGGTTGCTGGCCTGAATTGAAAGAGTTCTGCAGGGCACATGCCGTCGAGGTTTCCCTTTTTAATGACATTTTGATATTTTATGGTTGCAGTGTACAACATTTGCTCTATTCCTGCTATTCGGAATCTTCTGTATCTTCAATGCATTTGGTGAGTTCTTTTYTATTTCGATTTTCTCTCCCTACCGCCTATAAGTAATCCCACCATTCTCAGTTTTAGGATTTCTGGGAACCAACGAGCTGAAACTTCGTTATGATCATTATGAGCAACTGGTCCGAAAGCACTGTCAATTTGTGGAAGATCGAGATTTGAATGGATCAGAAGGGAAAACTGAGCATCCAAATGCCACTTTGGTATCCTTGTTGGCTGTTGTAAGGCATGGAGATCGGTATGGATTAGTGATGGATGGAGGATGTCAAATTGCAACCGAACAAGAGTCTATGGAATTTGATAAATATTTGGCCACGATAGAGAAACAGAAAAATCTTTTCGCCATTCCGGTAAATCTTGCTGATAAAAAACTAACACCGAGTAAAGACAAATGCGCAGTCGGGATGCTGACTCCTCGAGGAGCAATCCAGGAGTTTATGATGGGACGATTTCTGTTCAGCCAGTACAAAAACACGACTTTGTTCAGTTAGTTTTTAGATGAAATCTTTTATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCTTTTTAATGACATTTTGATA</pcr_primer_p1>
		<pcr_primer_p2>ATCTTCCACAAATTGACAGTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCCTTTTTAATGACATTTTGATATTTTATGGTTGCAGTGTACAACATTTGCTCTATTCCTGCTATTCGGAATCTTCTGTATCTTCAATGCATTTGGTGAGTTCTTTTCTATTTCGATTTTCTCTCCCTACCGCCTATAAGTAATCCCACCATTCTCAGTTTTAGGATTTCTGGGAACCAACGAGCTGAAACTTCGTTATGATCATTATGAGCAACTGGTCCGAAAGCACTGTCAATTTGTGGAAGAT</canonical_amplicon>
		<polymorphic_amplicon>CCCTTTTTAATGACATTTTGATATTTTATGGTTGCAGTGTACAACATTTGCTCTATTCCTGCTATTCGGAATCTTCTGTATCTTCAATGCATTTGGTGAGTTCTTTTYTATTTCGATTTTCTCTCCCTACCGCCTATAAGTAATCCCACCATTCTCAGTTTTAGGATTTCTGGGAACCAACGAGCTGAAACTTCGTTATGATCATTATGAGCAACTGGTCCGAAAGCACTGTCAATTTGTGGAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14779</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>676556</contig_pos>
        <strand>+</strand>
        <context>AGCAACTGGT[C/T]CGAAAGCACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGGGAACCAACGAGCTGAAACTTCGTTATGATCATTATGAGCAACTGGT</left_flank>
        <right_flank>CGAAAGCACTGTCAATTTGTGGAAGATCGAGATTTGAATGGATCAGAAGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGGAAATCGTGGCTTGTTTGTAATGAATTGGGCTTCAAAAGCTCGGAGTGCGTTGACTCCGAGAATTTGGTTCACTAATAAAAGTGGAGAAGATGATGGAACACGAAGGAATCGGAGTGTGTGAGTTTTCTACTTTGATAGCTTCAACAAGGGAAAGAACCTATAAAACCCAAATGGATTCCAGAATCGTTCGGCCCATGGATGCAGATACCAACACATCAGAGGAAGGTTGCTGGCCTGAATTGAAAGAGTTCTGCAGGGCACATGCCGTCGAGGTTTCCCTTTTTAATGACATTTTGATATTTTATGGTTGCAGTGTACAACATTTGCTCTATTCCTGCTATTCGGAATCTTCTGTATCTTCAATGCATTTGGTGAGTTCTTTTCTATTTCGATTTTCTCTCCCTACCGCCTATAAGTAATCCCACCATTCTCAGTTTTAGGATTTCTGGGAACCAACGAGCTGAAACTTCGTTATGATCATTATGAGCAACTGGTCCGAAAGCACTGTCAATTTGTGGAAGATCGAGATTTGAATGGATCAGAAGGGAAAACTGAGCATCCAAATGCCACTTTGGTATCCTTGTTGGCTGTTGTAAGGCATGGAGATCGGTATGGATTAGTGATGGATGGAGGATGTCAAATTGCAACCGAACAAGAGTCTATGGAATTTGATAAATATTTGGCCACGATAGAGAAACAGAAAAATCTTTTCGCCATTCCGGTAAATCTTGCTGATAAAAAACTAACACCGAGTAAAGACAAATGCGCAGTCGGGATGCTGACTCCTCGAGGAGCAATCCAGGAGTTTATGATGGGACGATTTCTGTTCAGCCAGTACAAAAACACGACTTTGTTCAGTTAGTTTTTAGATGAAATCTTTTATGAGAATAATTTGTGAATGTTTTCCAGATACTACGGACACCCCAGTAAATATTACTGTAACATTCTCTCATTTACAAAGAACATTTGATTCTGGTGTGGCTCTTGCTAGCGGGC</canonical>
            <polymorphic>CAGGAAATCGTGGCTTGTTTGTAATGAATTGGGCTTCAAAAGCTCGGAGTGCGTTGACTCCGAGAATTTGGTTCACTAATAAAAGTGGAGAAGATGATGGAACACGAAGGAATCGGAGTGTGTGAGTTTTCTACTTTGATAGCTTCAACAAGGGAAAGAACCTATAAAACCCAAATGGATTCCAGAATCGTTCGGCCCATGGATGCAGATACCAACACATCAGAGGAAGGTTGCTGGCCTGAATTGAAAGAGTTCTGCAGGGCACATGCCGTCGAGGTTTCCCTTTTTAATGACATTTTGATATTTTATGGTTGCAGTGTACAACATTTGCTCTATTCCTGCTATTCGGAATCTTCTGTATCTTCAATGCATTTGGTGAGTTCTTTTCTATTTCGATTTTCTCTCCCTACCGCCTATAAGTAATCCCACCATTCTCAGTTTTAGGATTTCTGGGAACCAACGAGCTGAAACTTCGTTATGATCATTATGAGCAACTGGTYCGAAAGCACTGTCAATTTGTGGAAGATCGAGATTTGAATGGATCAGAAGGGAAAACTGAGCATCCAAATGCCACTTTGGTATCCTTGTTGGCTGTTGTAAGGCATGGAGATCGGTATGGATTAGTGATGGATGGAGGATGTCAAATTGCAACCGAACAAGAGTCTATGGAATTTGATAAATATTTGGCCACGATAGAGAAACAGAAAAATCTTTTCGCCATTCCGGTAAATCTTGCTGATAAAAAACTAACACCGAGTAAAGACAAATGCGCAGTCGGGATGCTGACTCCTCGAGGAGCAATCCAGGAGTTTATGATGGGACGATTTCTGTTCAGCCAGTACAAAAACACGACTTTGTTCAGTTAGTTTTTAGATGAAATCTTTTATGAGAATAATTTGTGAATGTTTTCCAGATACTACGGACACCCCAGTAAATATTACTGTAACATTCTCTCATTTACAAAGAACATTTGATTCTGGTGTGGCTCTTGCTAGCGGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>503 303 194</canonical_bands>
                <polymorphic_bands>806 194</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>455 153 126 107 54 46 44 15</canonical_bands>
                <polymorphic_bands>455 197 126 107 54 46 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTATTCGGAATCTTCTGTATCT</pcr_primer_p1>
		<pcr_primer_p2>CAACAAGGATACCAAAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTATTCGGAATCTTCTGTATCTTCAATGCATTTGGTGAGTTCTTTTCTATTTCGATTTTCTCTCCCTACCGCCTATAAGTAATCCCACCATTCTCAGTTTTAGGATTTCTGGGAACCAACGAGCTGAAACTTCGTTATGATCATTATGAGCAACTGGTCCGAAAGCACTGTCAATTTGTGGAAGATCGAGATTTGAATGGATCAGAAGGGAAAACTGAGCATCCAAATGCCACTTTGGTATCCTTGTTG</canonical_amplicon>
		<polymorphic_amplicon>GCTATTCGGAATCTTCTGTATCTTCAATGCATTTGGTGAGTTCTTTTCTATTTCGATTTTCTCTCCCTACCGCCTATAAGTAATCCCACCATTCTCAGTTTTAGGATTTCTGGGAACCAACGAGCTGAAACTTCGTTATGATCATTATGAGCAACTGGTYCGAAAGCACTGTCAATTTGTGGAAGATCGAGATTTGAATGGATCAGAAGGGAAAACTGAGCATCCAAATGCCACTTTGGTATCCTTGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14780</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>676730</contig_pos>
        <strand>+</strand>
        <context>CTATGGAATT[C/T]RATAAATATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGATGGATGGAGGATGTCAAATTGCAACCGAACAAGAGTCTATGGAATT</left_flank>
        <right_flank>GATAAATATTTGGCCACGATAGAGAAACAGAAAAATCTTTTCGCCATTCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGATTCCAGAATCGTTCGGCCCATGGATGCAGATACCAACACATCAGAGGAAGGTTGCTGGCCTGAATTGAAAGAGTTCTGCAGGGCACATGCCGTCGAGGTTTCCCTTTTTAATGACATTTTGATATTTTATGGTTGCAGTGTACAACATTTGCTCTATTCCTGCTATTCGGAATCTTCTGTATCTTCAATGCATTTGGTGAGTTCTTTTCTATTTCGATTTTCTCTCCCTACCGCCTATAAGTAATCCCACCATTCTCAGTTTTAGGATTTCTGGGAACCAACGAGCTGAAACTTCGTTATGATCATTATGAGCAACTGGTCCGAAAGCACTGTCAATTTGTGGAAGATCGAGATTTGAATGGATCAGAAGGGAAAACTGAGCATCCAAATGCCACTTTGGTATCCTTGTTGGCTGTTGTAAGGCATGGAGATCGGTATGGATTAGTGATGGATGGAGGATGTCAAATTGCAACCGAACAAGAGTCTATGGAATTTGATAAATATTTGGCCACGATAGAGAAACAGAAAAATCTTTTCGCCATTCCGGTAAATCTTGCTGATAAAAAACTAACACCGAGTAAAGACAAATGCGCAGTCGGGATGCTGACTCCTCGAGGAGCAATCCAGGAGTTTATGATGGGACGATTTCTGTTCAGCCAGTACAAAAACACGACTTTGTTCAGTTAGTTTTTAGATGAAATCTTTTATGAGAATAATTTGTGAATGTTTTCCAGATACTACGGACACCCCAGTAAATATTACTGTAACATTCTCTCATTTACAAAGAACATTTGATTCTGGTGTGGCTCTTGCTAGCGGGCTTTTGGATCAAAATCAGACGACGATAAGAACTCCAATTGAATTCCAGCAGGGATCAGTTTATTACGGATGCACTGATTCTGGATGTGAATGCGATGAAAACATCATCATGCTGCTAGAAATGTCAAAAGCGGAAAGACAAGGATTATATCGATTGGAAGTTGAAGAGAAAACTC</canonical>
            <polymorphic>ATGGATTCCAGAATCGTTCGGCCCATGGATGCAGATACCAACACATCAGAGGAAGGTTGCTGGCCTGAATTGAAAGAGTTCTGCAGGGCACATGCCGTCGAGGTTTCCCTTTTTAATGACATTTTGATATTTTATGGTTGCAGTGTACAACATTTGCTCTATTCCTGCTATTCGGAATCTTCTGTATCTTCAATGCATTTGGTGAGTTCTTTTCTATTTCGATTTTCTCTCCCTACCGCCTATAAGTAATCCCACCATTCTCAGTTTTAGGATTTCTGGGAACCAACGAGCTGAAACTTCGTTATGATCATTATGAGCAACTGGTCCGAAAGCACTGTCAATTTGTGGAAGATCGAGATTTGAATGGATCAGAAGGGAAAACTGAGCATCCAAATGCCACTTTGGTATCCTTGTTGGCTGTTGTAAGGCATGGAGATCGGTATGGATTAGTGATGGATGGAGGATGTCAAATTGCAACCGAACAAGAGTCTATGGAATTYGATAAATATTTGGCCACGATAGAGAAACAGAAAAATCTTTTCGCCATTCCGGTAAATCTTGCTGATAAAAAACTAACACCGAGTAAAGACAAATGCGCAGTCGGGATGCTGACTCCTCGAGGAGCAATCCAGGAGTTTATGATGGGACGATTTCTGTTCAGCCAGTACAAAAACACGACTTTGTTCAGTTAGTTTTTAGATGAAATCTTTTATGAGAATAATTTGTGAATGTTTTCCAGATACTACGGACACCCCAGTAAATATTACTGTAACATTCTCTCATTTACAAAGAACATTTGATTCTGGTGTGGCTCTTGCTAGCGGGCTTTTGGATCAAAATCAGACGACGATAAGAACTCCAATTGAATTCCAGCAGGGATCAGTTTATTACGGATGCACTGATTCTGGATGTGAATGCGATGAAAACATCATCATGCTGCTAGAAATGTCAAAAGCGGAAAGACAAGGATTATATCGATTGGAAGTTGAAGAGAAAACTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>495 370 135</canonical_bands>
                <polymorphic_bands>865 135</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTAGTGATGGATGGAGGAT</pcr_primer_p1>
		<pcr_primer_p2>AACTAACTGAACAAAGTCGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATTAGTGATGGATGGAGGATGTCAAATTGCAACCGAACAAGAGTCTATGGAATTTGATAAATATTTGGCCACGATAGAGAAACAGAAAAATCTTTTCGCCATTCCGGTAAATCTTGCTGATAAAAAACTAACACCGAGTAAAGACAAATGCGCAGTCGGGATGCTGACTCCTCGAGGAGCAATCCAGGAGTTTATGATGGGACGATTTCTGTTCAGCCAGTACAAAAACACGACTTTGTTCAGTTAGTT</canonical_amplicon>
		<polymorphic_amplicon>GATTAGTGATGGATGGAGGATGTCAAATTGCAACCGAACAAGAGTCTATGGAATTYGATAAATATTTGGCCACGATAGAGAAACAGAAAAATCTTTTCGCCATTCCGGTAAATCTTGCTGATAAAAAACTAACACCGAGTAAAGACAAATGCGCAGTCGGGATGCTGACTCCTCGAGGAGCAATCCAGGAGTTTATGATGGGACGATTTCTGTTCAGCCAGTACAAAAACACGACTTTGTTCAGTTAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14781</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>676731</contig_pos>
        <strand>+</strand>
        <context>TATGGAATTY[A/G]ATAAATATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATGGATGGAGGATGTCAAATTGCAACCGAACAAGAGTCTATGGAATTT</left_flank>
        <right_flank>ATAAATATTTGGCCACGATAGAGAAACAGAAAAATCTTTTCGCCATTCCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGATTCCAGAATCGTTCGGCCCATGGATGCAGATACCAACACATCAGAGGAAGGTTGCTGGCCTGAATTGAAAGAGTTCTGCAGGGCACATGCCGTCGAGGTTTCCCTTTTTAATGACATTTTGATATTTTATGGTTGCAGTGTACAACATTTGCTCTATTCCTGCTATTCGGAATCTTCTGTATCTTCAATGCATTTGGTGAGTTCTTTTCTATTTCGATTTTCTCTCCCTACCGCCTATAAGTAATCCCACCATTCTCAGTTTTAGGATTTCTGGGAACCAACGAGCTGAAACTTCGTTATGATCATTATGAGCAACTGGTCCGAAAGCACTGTCAATTTGTGGAAGATCGAGATTTGAATGGATCAGAAGGGAAAACTGAGCATCCAAATGCCACTTTGGTATCCTTGTTGGCTGTTGTAAGGCATGGAGATCGGTATGGATTAGTGATGGATGGAGGATGTCAAATTGCAACCGAACAAGAGTCTATGGAATTTGATAAATATTTGGCCACGATAGAGAAACAGAAAAATCTTTTCGCCATTCCGGTAAATCTTGCTGATAAAAAACTAACACCGAGTAAAGACAAATGCGCAGTCGGGATGCTGACTCCTCGAGGAGCAATCCAGGAGTTTATGATGGGACGATTTCTGTTCAGCCAGTACAAAAACACGACTTTGTTCAGTTAGTTTTTAGATGAAATCTTTTATGAGAATAATTTGTGAATGTTTTCCAGATACTACGGACACCCCAGTAAATATTACTGTAACATTCTCTCATTTACAAAGAACATTTGATTCTGGTGTGGCTCTTGCTAGCGGGCTTTTGGATCAAAATCAGACGACGATAAGAACTCCAATTGAATTCCAGCAGGGATCAGTTTATTACGGATGCACTGATTCTGGATGTGAATGCGATGAAAACATCATCATGCTGCTAGAAATGTCAAAAGCGGAAAGACAAGGATTATATCGATTGGAAGTTGAAGAGAAAACTCA</canonical>
            <polymorphic>TGGATTCCAGAATCGTTCGGCCCATGGATGCAGATACCAACACATCAGAGGAAGGTTGCTGGCCTGAATTGAAAGAGTTCTGCAGGGCACATGCCGTCGAGGTTTCCCTTTTTAATGACATTTTGATATTTTATGGTTGCAGTGTACAACATTTGCTCTATTCCTGCTATTCGGAATCTTCTGTATCTTCAATGCATTTGGTGAGTTCTTTTCTATTTCGATTTTCTCTCCCTACCGCCTATAAGTAATCCCACCATTCTCAGTTTTAGGATTTCTGGGAACCAACGAGCTGAAACTTCGTTATGATCATTATGAGCAACTGGTCCGAAAGCACTGTCAATTTGTGGAAGATCGAGATTTGAATGGATCAGAAGGGAAAACTGAGCATCCAAATGCCACTTTGGTATCCTTGTTGGCTGTTGTAAGGCATGGAGATCGGTATGGATTAGTGATGGATGGAGGATGTCAAATTGCAACCGAACAAGAGTCTATGGAATTTRATAAATATTTGGCCACGATAGAGAAACAGAAAAATCTTTTCGCCATTCCGGTAAATCTTGCTGATAAAAAACTAACACCGAGTAAAGACAAATGCGCAGTCGGGATGCTGACTCCTCGAGGAGCAATCCAGGAGTTTATGATGGGACGATTTCTGTTCAGCCAGTACAAAAACACGACTTTGTTCAGTTAGTTTTTAGATGAAATCTTTTATGAGAATAATTTGTGAATGTTTTCCAGATACTACGGACACCCCAGTAAATATTACTGTAACATTCTCTCATTTACAAAGAACATTTGATTCTGGTGTGGCTCTTGCTAGCGGGCTTTTGGATCAAAATCAGACGACGATAAGAACTCCAATTGAATTCCAGCAGGGATCAGTTTATTACGGATGCACTGATTCTGGATGTGAATGCGATGAAAACATCATCATGCTGCTAGAAATGTCAAAAGCGGAAAGACAAGGATTATATCGATTGGAAGTTGAAGAGAAAACTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTAGTGATGGATGGAGGAT</pcr_primer_p1>
		<pcr_primer_p2>AACTAACTGAACAAAGTCGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATTAGTGATGGATGGAGGATGTCAAATTGCAACCGAACAAGAGTCTATGGAATTTGATAAATATTTGGCCACGATAGAGAAACAGAAAAATCTTTTCGCCATTCCGGTAAATCTTGCTGATAAAAAACTAACACCGAGTAAAGACAAATGCGCAGTCGGGATGCTGACTCCTCGAGGAGCAATCCAGGAGTTTATGATGGGACGATTTCTGTTCAGCCAGTACAAAAACACGACTTTGTTCAGTTAGTT</canonical_amplicon>
		<polymorphic_amplicon>GATTAGTGATGGATGGAGGATGTCAAATTGCAACCGAACAAGAGTCTATGGAATTTRATAAATATTTGGCCACGATAGAGAAACAGAAAAATCTTTTCGCCATTCCGGTAAATCTTGCTGATAAAAAACTAACACCGAGTAAAGACAAATGCGCAGTCGGGATGCTGACTCCTCGAGGAGCAATCCAGGAGTTTATGATGGGACGATTTCTGTTCAGCCAGTACAAAAACACGACTTTGTTCAGTTAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14782</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>676884</contig_pos>
        <strand>+</strand>
        <context>GGGACGATTT[C/T]TGTTCARCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGATGCTGACTCCTCGAGGAGCAATCCAGGAGTTTATGATGGGACGATTT</left_flank>
        <right_flank>TGTTCAGCCAGTACAAAAACACGACTTTGTTCAGTTAGTTTTTAGATGAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTCTATTCCTGCTATTCGGAATCTTCTGTATCTTCAATGCATTTGGTGAGTTCTTTTCTATTTCGATTTTCTCTCCCTACCGCCTATAAGTAATCCCACCATTCTCAGTTTTAGGATTTCTGGGAACCAACGAGCTGAAACTTCGTTATGATCATTATGAGCAACTGGTCCGAAAGCACTGTCAATTTGTGGAAGATCGAGATTTGAATGGATCAGAAGGGAAAACTGAGCATCCAAATGCCACTTTGGTATCCTTGTTGGCTGTTGTAAGGCATGGAGATCGGTATGGATTAGTGATGGATGGAGGATGTCAAATTGCAACCGAACAAGAGTCTATGGAATTTGATAAATATTTGGCCACGATAGAGAAACAGAAAAATCTTTTCGCCATTCCGGTAAATCTTGCTGATAAAAAACTAACACCGAGTAAAGACAAATGCGCAGTCGGGATGCTGACTCCTCGAGGAGCAATCCAGGAGTTTATGATGGGACGATTTCTGTTCAGCCAGTACAAAAACACGACTTTGTTCAGTTAGTTTTTAGATGAAATCTTTTATGAGAATAATTTGTGAATGTTTTCCAGATACTACGGACACCCCAGTAAATATTACTGTAACATTCTCTCATTTACAAAGAACATTTGATTCTGGTGTGGCTCTTGCTAGCGGGCTTTTGGATCAAAATCAGACGACGATAAGAACTCCAATTGAATTCCAGCAGGGATCAGTTTATTACGGATGCACTGATTCTGGATGTGAATGCGATGAAAACATCATCATGCTGCTAGAAATGTCAAAAGCGGAAAGACAAGGATTATATCGATTGGAAGTTGAAGAGAAAACTCAACAAGTCGTACAGAAGTTGTTTGCTGAACTGAACTACAGTACTCCAAATATGGATCCTCTAGATATAATTGACAATTTGGTTTCTCGGTTTGCATGTCCACGAAAACCTCTCCCCTGTGATGACAGATATTGTGCATTATATTTATTTTTTGG</canonical>
            <polymorphic>TGCTCTATTCCTGCTATTCGGAATCTTCTGTATCTTCAATGCATTTGGTGAGTTCTTTTCTATTTCGATTTTCTCTCCCTACCGCCTATAAGTAATCCCACCATTCTCAGTTTTAGGATTTCTGGGAACCAACGAGCTGAAACTTCGTTATGATCATTATGAGCAACTGGTCCGAAAGCACTGTCAATTTGTGGAAGATCGAGATTTGAATGGATCAGAAGGGAAAACTGAGCATCCAAATGCCACTTTGGTATCCTTGTTGGCTGTTGTAAGGCATGGAGATCGGTATGGATTAGTGATGGATGGAGGATGTCAAATTGCAACCGAACAAGAGTCTATGGAATTTGATAAATATTTGGCCACGATAGAGAAACAGAAAAATCTTTTCGCCATTCCGGTAAATCTTGCTGATAAAAAACTAACACCGAGTAAAGACAAATGCGCAGTCGGGATGCTGACTCCTCGAGGAGCAATCCAGGAGTTTATGATGGGACGATTTYTGTTCAGCCAGTACAAAAACACGACTTTGTTCAGTTAGTTTTTAGATGAAATCTTTTATGAGAATAATTTGTGAATGTTTTCCAGATACTACGGACACCCCAGTAAATATTACTGTAACATTCTCTCATTTACAAAGAACATTTGATTCTGGTGTGGCTCTTGCTAGCGGGCTTTTGGATCAAAATCAGACGACGATAAGAACTCCAATTGAATTCCAGCAGGGATCAGTTTATTACGGATGCACTGATTCTGGATGTGAATGCGATGAAAACATCATCATGCTGCTAGAAATGTCAAAAGCGGAAAGACAAGGATTATATCGATTGGAAGTTGAAGAGAAAACTCAACAAGTCGTACAGAAGTTGTTTGCTGAACTGAACTACAGTACTCCAAATATGGATCCTCTAGATATAATTGACAATTTGGTTTCTCGGTTTGCATGTCCACGAAAACCTCTCCCCTGTGATGACAGATATTGTGCATTATATTTATTTTTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTAACACCGAGTAAAGACA</pcr_primer_p1>
		<pcr_primer_p2>ACCAGAATCAAATGTTCTTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AAAACTAACACCGAGTAAAGACAAATGCGCAGTCGGGATGCTGACTCCTCGAGGAGCAATCCAGGAGTTTATGATGGGACGATTTCTGTTCAGCCAGTACAAAAACACGACTTTGTTCAGTTAGTTTTTAGATGAAATCTTTTATGAGAATAATTTGTGAATGTTTTCCAGATACTACGGACACCCCAGTAAATATTACTGTAACATTCTCTCATTTACAAAGAACATTTGATTCTGGT</canonical_amplicon>
		<polymorphic_amplicon>AAAACTAACACCGAGTAAAGACAAATGCGCAGTCGGGATGCTGACTCCTCGAGGAGCAATCCAGGAGTTTATGATGGGACGATTTYTGTTCAGCCAGTACAAAAACACGACTTTGTTCAGTTAGTTTTTAGATGAAATCTTTTATGAGAATAATTTGTGAATGTTTTCCAGATACTACGGACACCCCAGTAAATATTACTGTAACATTCTCTCATTTACAAAGAACATTTGATTCTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14783</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>676891</contig_pos>
        <strand>+</strand>
        <context>TTTYTGTTCA[A/G]CCAGTACAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACTCCTCGAGGAGCAATCCAGGAGTTTATGATGGGACGATTTCTGTTCA</left_flank>
        <right_flank>CCAGTACAAAAACACGACTTTGTTCAGTTAGTTTTTAGATGAAATCTTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCTGCTATTCGGAATCTTCTGTATCTTCAATGCATTTGGTGAGTTCTTTTCTATTTCGATTTTCTCTCCCTACCGCCTATAAGTAATCCCACCATTCTCAGTTTTAGGATTTCTGGGAACCAACGAGCTGAAACTTCGTTATGATCATTATGAGCAACTGGTCCGAAAGCACTGTCAATTTGTGGAAGATCGAGATTTGAATGGATCAGAAGGGAAAACTGAGCATCCAAATGCCACTTTGGTATCCTTGTTGGCTGTTGTAAGGCATGGAGATCGGTATGGATTAGTGATGGATGGAGGATGTCAAATTGCAACCGAACAAGAGTCTATGGAATTTGATAAATATTTGGCCACGATAGAGAAACAGAAAAATCTTTTCGCCATTCCGGTAAATCTTGCTGATAAAAAACTAACACCGAGTAAAGACAAATGCGCAGTCGGGATGCTGACTCCTCGAGGAGCAATCCAGGAGTTTATGATGGGACGATTTCTGTTCAGCCAGTACAAAAACACGACTTTGTTCAGTTAGTTTTTAGATGAAATCTTTTATGAGAATAATTTGTGAATGTTTTCCAGATACTACGGACACCCCAGTAAATATTACTGTAACATTCTCTCATTTACAAAGAACATTTGATTCTGGTGTGGCTCTTGCTAGCGGGCTTTTGGATCAAAATCAGACGACGATAAGAACTCCAATTGAATTCCAGCAGGGATCAGTTTATTACGGATGCACTGATTCTGGATGTGAATGCGATGAAAACATCATCATGCTGCTAGAAATGTCAAAAGCGGAAAGACAAGGATTATATCGATTGGAAGTTGAAGAGAAAACTCAACAAGTCGTACAGAAGTTGTTTGCTGAACTGAACTACAGTACTCCAAATATGGATCCTCTAGATATAATTGACAATTTGGTTTCTCGGTTTGCATGTCCACGAAAACCTCTCCCCTGTGATGACAGATATTGTGCATTATATTTATTTTTTGGAGATGTA</canonical>
            <polymorphic>TTCCTGCTATTCGGAATCTTCTGTATCTTCAATGCATTTGGTGAGTTCTTTTCTATTTCGATTTTCTCTCCCTACCGCCTATAAGTAATCCCACCATTCTCAGTTTTAGGATTTCTGGGAACCAACGAGCTGAAACTTCGTTATGATCATTATGAGCAACTGGTCCGAAAGCACTGTCAATTTGTGGAAGATCGAGATTTGAATGGATCAGAAGGGAAAACTGAGCATCCAAATGCCACTTTGGTATCCTTGTTGGCTGTTGTAAGGCATGGAGATCGGTATGGATTAGTGATGGATGGAGGATGTCAAATTGCAACCGAACAAGAGTCTATGGAATTTGATAAATATTTGGCCACGATAGAGAAACAGAAAAATCTTTTCGCCATTCCGGTAAATCTTGCTGATAAAAAACTAACACCGAGTAAAGACAAATGCGCAGTCGGGATGCTGACTCCTCGAGGAGCAATCCAGGAGTTTATGATGGGACGATTTCTGTTCARCCAGTACAAAAACACGACTTTGTTCAGTTAGTTTTTAGATGAAATCTTTTATGAGAATAATTTGTGAATGTTTTCCAGATACTACGGACACCCCAGTAAATATTACTGTAACATTCTCTCATTTACAAAGAACATTTGATTCTGGTGTGGCTCTTGCTAGCGGGCTTTTGGATCAAAATCAGACGACGATAAGAACTCCAATTGAATTCCAGCAGGGATCAGTTTATTACGGATGCACTGATTCTGGATGTGAATGCGATGAAAACATCATCATGCTGCTAGAAATGTCAAAAGCGGAAAGACAAGGATTATATCGATTGGAAGTTGAAGAGAAAACTCAACAAGTCGTACAGAAGTTGTTTGCTGAACTGAACTACAGTACTCCAAATATGGATCCTCTAGATATAATTGACAATTTGGTTTCTCGGTTTGCATGTCCACGAAAACCTCTCCCCTGTGATGACAGATATTGTGCATTATATTTATTTTTTGGAGATGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>336 150 148 129 127 96 14</canonical_bands>
                <polymorphic_bands>336 298 129 127 96 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACTAACACCGAGTAAAGACA</pcr_primer_p1>
		<pcr_primer_p2>ACCAGAATCAAATGTTCTTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AAAACTAACACCGAGTAAAGACAAATGCGCAGTCGGGATGCTGACTCCTCGAGGAGCAATCCAGGAGTTTATGATGGGACGATTTCTGTTCAGCCAGTACAAAAACACGACTTTGTTCAGTTAGTTTTTAGATGAAATCTTTTATGAGAATAATTTGTGAATGTTTTCCAGATACTACGGACACCCCAGTAAATATTACTGTAACATTCTCTCATTTACAAAGAACATTTGATTCTGGT</canonical_amplicon>
		<polymorphic_amplicon>AAAACTAACACCGAGTAAAGACAAATGCGCAGTCGGGATGCTGACTCCTCGAGGAGCAATCCAGGAGTTTATGATGGGACGATTTCTGTTCARCCAGTACAAAAACACGACTTTGTTCAGTTAGTTTTTAGATGAAATCTTTTATGAGAATAATTTGTGAATGTTTTCCAGATACTACGGACACCCCAGTAAATATTACTGTAACATTCTCTCATTTACAAAGAACATTTGATTCTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14784</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>676928</contig_pos>
        <strand>+</strand>
        <context>GTTAGTTTTT[A/G]GATGAAATCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGATTTCTGTTCAGCCAGTACAAAAACACGACTTTGTTCAGTTAGTTTTT</left_flank>
        <right_flank>GATGAAATCTTTTATGAGAATAATTTGTGAATGTTTTCCAGATACTACGG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGTGAGTTCTTTTCTATTTCGATTTTCTCTCCCTACCGCCTATAAGTAATCCCACCATTCTCAGTTTTAGGATTTCTGGGAACCAACGAGCTGAAACTTCGTTATGATCATTATGAGCAACTGGTCCGAAAGCACTGTCAATTTGTGGAAGATCGAGATTTGAATGGATCAGAAGGGAAAACTGAGCATCCAAATGCCACTTTGGTATCCTTGTTGGCTGTTGTAAGGCATGGAGATCGGTATGGATTAGTGATGGATGGAGGATGTCAAATTGCAACCGAACAAGAGTCTATGGAATTTGATAAATATTTGGCCACGATAGAGAAACAGAAAAATCTTTTCGCCATTCCGGTAAATCTTGCTGATAAAAAACTAACACCGAGTAAAGACAAATGCGCAGTCGGGATGCTGACTCCTCGAGGAGCAATCCAGGAGTTTATGATGGGACGATTTCTGTTCAGCCAGTACAAAAACACGACTTTGTTCAGTTAGTTTTTAGATGAAATCTTTTATGAGAATAATTTGTGAATGTTTTCCAGATACTACGGACACCCCAGTAAATATTACTGTAACATTCTCTCATTTACAAAGAACATTTGATTCTGGTGTGGCTCTTGCTAGCGGGCTTTTGGATCAAAATCAGACGACGATAAGAACTCCAATTGAATTCCAGCAGGGATCAGTTTATTACGGATGCACTGATTCTGGATGTGAATGCGATGAAAACATCATCATGCTGCTAGAAATGTCAAAAGCGGAAAGACAAGGATTATATCGATTGGAAGTTGAAGAGAAAACTCAACAAGTCGTACAGAAGTTGTTTGCTGAACTGAACTACAGTACTCCAAATATGGATCCTCTAGATATAATTGACAATTTGGTTTCTCGGTTTGCATGTCCACGAAAACCTCTCCCCTGTGATGACAGATATTGTGCATTATATTTATTTTTTGGAGATGTAAGTTTTTTCATTCCAAATGAAATTTTTAAAATTGATT</canonical>
            <polymorphic>TTGGTGAGTTCTTTTCTATTTCGATTTTCTCTCCCTACCGCCTATAAGTAATCCCACCATTCTCAGTTTTAGGATTTCTGGGAACCAACGAGCTGAAACTTCGTTATGATCATTATGAGCAACTGGTCCGAAAGCACTGTCAATTTGTGGAAGATCGAGATTTGAATGGATCAGAAGGGAAAACTGAGCATCCAAATGCCACTTTGGTATCCTTGTTGGCTGTTGTAAGGCATGGAGATCGGTATGGATTAGTGATGGATGGAGGATGTCAAATTGCAACCGAACAAGAGTCTATGGAATTTGATAAATATTTGGCCACGATAGAGAAACAGAAAAATCTTTTCGCCATTCCGGTAAATCTTGCTGATAAAAAACTAACACCGAGTAAAGACAAATGCGCAGTCGGGATGCTGACTCCTCGAGGAGCAATCCAGGAGTTTATGATGGGACGATTTCTGTTCAGCCAGTACAAAAACACGACTTTGTTCAGTTAGTTTTTRGATGAAATCTTTTATGAGAATAATTTGTGAATGTTTTCCAGATACTACGGACACCCCAGTAAATATTACTGTAACATTCTCTCATTTACAAAGAACATTTGATTCTGGTGTGGCTCTTGCTAGCGGGCTTTTGGATCAAAATCAGACGACGATAAGAACTCCAATTGAATTCCAGCAGGGATCAGTTTATTACGGATGCACTGATTCTGGATGTGAATGCGATGAAAACATCATCATGCTGCTAGAAATGTCAAAAGCGGAAAGACAAGGATTATATCGATTGGAAGTTGAAGAGAAAACTCAACAAGTCGTACAGAAGTTGTTTGCTGAACTGAACTACAGTACTCCAAATATGGATCCTCTAGATATAATTGACAATTTGGTTTCTCGGTTTGCATGTCCACGAAAACCTCTCCCCTGTGATGACAGATATTGTGCATTATATTTATTTTTTGGAGATGTAAGTTTTTTCATTCCAAATGAAATTTTTAAAATTGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTAACACCGAGTAAAGACA</pcr_primer_p1>
		<pcr_primer_p2>ACCAGAATCAAATGTTCTTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AAAACTAACACCGAGTAAAGACAAATGCGCAGTCGGGATGCTGACTCCTCGAGGAGCAATCCAGGAGTTTATGATGGGACGATTTCTGTTCAGCCAGTACAAAAACACGACTTTGTTCAGTTAGTTTTTAGATGAAATCTTTTATGAGAATAATTTGTGAATGTTTTCCAGATACTACGGACACCCCAGTAAATATTACTGTAACATTCTCTCATTTACAAAGAACATTTGATTCTGGT</canonical_amplicon>
		<polymorphic_amplicon>AAAACTAACACCGAGTAAAGACAAATGCGCAGTCGGGATGCTGACTCCTCGAGGAGCAATCCAGGAGTTTATGATGGGACGATTTCTGTTCAGCCAGTACAAAAACACGACTTTGTTCAGTTAGTTTTTRGATGAAATCTTTTATGAGAATAATTTGTGAATGTTTTCCAGATACTACGGACACCCCAGTAAATATTACTGTAACATTCTCTCATTTACAAAGAACATTTGATTCTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14785</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>677560</contig_pos>
        <strand>+</strand>
        <context>GAAACGAATG[G/T]AAAACAAGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAGTGCTTATCCAATTCTTCGATACGTTGGATTAATGGCTGAAACGAATG</left_flank>
        <right_flank>AAAACAAGTCAAACTGTTTTCTTCTCATGATACGATTGTTGGAGCGATTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATCAAAATCAGACGACGATAAGAACTCCAATTGAATTCCAGCAGGGATCAGTTTATTACGGATGCACTGATTCTGGATGTGAATGCGATGAAAACATCATCATGCTGCTAGAAATGTCAAAAGCGGAAAGACAAGGATTATATCGATTGGAAGTTGAAGAGAAAACTCAACAAGTCGTACAGAAGTTGTTTGCTGAACTGAACTACAGTACTCCAAATATGGATCCTCTAGATATAATTGACAATTTGGTTTCTCGGTTTGCATGTCCACGAAAACCTCTCCCCTGTGATGACAGATATTGTGCATTATATTTATTTTTTGGAGATGTAAGTTTTTTCATTCCAAATGAAATTTTTAAAATTGATTTCAGATCTTCGAATACTTCTCGAAACAAAGTGCAAAACTTTTCGATTTGAATATTGGAGTGGAGAGACAATATCGTGTTTTGAGTGCTTATCCAATTCTTCGATACGTTGGATTAATGGCTGAAACGAATGTAAAACAAGTCAAACTGTTTTCTTCTCATGATACGATTGTTGGAGCGATTTTACGAATTCTCACGGATTCCGGAAAATATACAGATTGGCAAGTGTTCGCAGCTCGGATTGTTTTTGAAGTGAGTTAATTTTCACCTACAAAATGCGAAATTTTTCATTTACAGATCTATGAAACCGCTGAAAAAGTAAAGCTGCTTCGCGTTGTATACGATGGGCAGGACATAACATCGTTGGTGAAATTCTGTAAAAGTCTGGAATTCGGATTGTGTCCAGTTTCGGATCTGAAGCAATTCTTGGCAGTTGGAATATTCGAGATGGCCGGATATAAAACTTTTGAGCAAACTTGTAAAGATCATCGGAAAGAATTCTATTTCGTCTGATAAATAAATTTCATTTCTTATTGTGTTGTTGTCGTTTAATGGAAACATTACTGTTGTTGAACAGTGTACAATACCTATGAAACCAGAACGCATCTTAAAAGAAAACGAGAGACACTTCCAC</canonical>
            <polymorphic>GGATCAAAATCAGACGACGATAAGAACTCCAATTGAATTCCAGCAGGGATCAGTTTATTACGGATGCACTGATTCTGGATGTGAATGCGATGAAAACATCATCATGCTGCTAGAAATGTCAAAAGCGGAAAGACAAGGATTATATCGATTGGAAGTTGAAGAGAAAACTCAACAAGTCGTACAGAAGTTGTTTGCTGAACTGAACTACAGTACTCCAAATATGGATCCTCTAGATATAATTGACAATTTGGTTTCTCGGTTTGCATGTCCACGAAAACCTCTCCCCTGTGATGACAGATATTGTGCATTATATTTATTTTTTGGAGATGTAAGTTTTTTCATTCCAAATGAAATTTTTAAAATTGATTTCAGATCTTCGAATACTTCTCGAAACAAAGTGCAAAACTTTTCGATTTGAATATTGGAGTGGAGAGACAATATCGTGTTTTGAGTGCTTATCCAATTCTTCGATACGTTGGATTAATGGCTGAAACGAATGKAAAACAAGTCAAACTGTTTTCTTCTCATGATACGATTGTTGGAGCGATTTTACGAATTCTCACGGATTCCGGAAAATATACAGATTGGCAAGTGTTCGCAGCTCGGATTGTTTTTGAAGTGAGTTAATTTTCACCTACAAAATGCGAAATTTTTCATTTACAGATCTATGAAACCGCTGAAAAAGTAAAGCTGCTTCGCGTTGTATACGATGGGCAGGACATAACATCGTTGGTGAAATTCTGTAAAAGTCTGGAATTCGGATTGTGTCCAGTTTCGGATCTGAAGCAATTCTTGGCAGTTGGAATATTCGAGATGGCCGGATATAAAACTTTTGAGCAAACTTGTAAAGATCATCGGAAAGAATTCTATTTCGTCTGATAAATAAATTTCATTTCTTATTGTGTTGTTGTCGTTTAATGGAAACATTACTGTTGTTGAACAGTGTACAATACCTATGAAACCAGAACGCATCTTAAAAGAAAACGAGAGACACTTCCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAGACAATATCGTGTTTTGAG</pcr_primer_p1>
		<pcr_primer_p2>CGGTTTCATAGATCTGTAAATGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAGAGACAATATCGTGTTTTGAGTGCTTATCCAATTCTTCGATACGTTGGATTAATGGCTGAAACGAATGTAAAACAAGTCAAACTGTTTTCTTCTCATGATACGATTGTTGGAGCGATTTTACGAATTCTCACGGATTCCGGAAAATATACAGATTGGCAAGTGTTCGCAGCTCGGATTGTTTTTGAAGTGAGTTAATTTTCACCTACAAAATGCGAAATTTTTCATTTACAGATCTATGAAACCG</canonical_amplicon>
		<polymorphic_amplicon>GAGAGACAATATCGTGTTTTGAGTGCTTATCCAATTCTTCGATACGTTGGATTAATGGCTGAAACGAATGKAAAACAAGTCAAACTGTTTTCTTCTCATGATACGATTGTTGGAGCGATTTTACGAATTCTCACGGATTCCGGAAAATATACAGATTGGCAAGTGTTCGCAGCTCGGATTGTTTTTGAAGTGAGTTAATTTTCACCTACAAAATGCGAAATTTTTCATTTACAGATCTATGAAACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14786</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>677600</contig_pos>
        <strand>+</strand>
        <context>ATACGATTGT[G/T]GGAGCGATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAACGAATGTAAAACAAGTCAAACTGTTTTCTTCTCATGATACGATTGT</left_flank>
        <right_flank>GGAGCGATTTTACGAATTCTCACGGATTCCGGAAAATATACAGATTGGCA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCAGGGATCAGTTTATTACGGATGCACTGATTCTGGATGTGAATGCGATGAAAACATCATCATGCTGCTAGAAATGTCAAAAGCGGAAAGACAAGGATTATATCGATTGGAAGTTGAAGAGAAAACTCAACAAGTCGTACAGAAGTTGTTTGCTGAACTGAACTACAGTACTCCAAATATGGATCCTCTAGATATAATTGACAATTTGGTTTCTCGGTTTGCATGTCCACGAAAACCTCTCCCCTGTGATGACAGATATTGTGCATTATATTTATTTTTTGGAGATGTAAGTTTTTTCATTCCAAATGAAATTTTTAAAATTGATTTCAGATCTTCGAATACTTCTCGAAACAAAGTGCAAAACTTTTCGATTTGAATATTGGAGTGGAGAGACAATATCGTGTTTTGAGTGCTTATCCAATTCTTCGATACGTTGGATTAATGGCTGAAACGAATGTAAAACAAGTCAAACTGTTTTCTTCTCATGATACGATTGTTGGAGCGATTTTACGAATTCTCACGGATTCCGGAAAATATACAGATTGGCAAGTGTTCGCAGCTCGGATTGTTTTTGAAGTGAGTTAATTTTCACCTACAAAATGCGAAATTTTTCATTTACAGATCTATGAAACCGCTGAAAAAGTAAAGCTGCTTCGCGTTGTATACGATGGGCAGGACATAACATCGTTGGTGAAATTCTGTAAAAGTCTGGAATTCGGATTGTGTCCAGTTTCGGATCTGAAGCAATTCTTGGCAGTTGGAATATTCGAGATGGCCGGATATAAAACTTTTGAGCAAACTTGTAAAGATCATCGGAAAGAATTCTATTTCGTCTGATAAATAAATTTCATTTCTTATTGTGTTGTTGTCGTTTAATGGAAACATTACTGTTGTTGAACAGTGTACAATACCTATGAAACCAGAACGCATCTTAAAAGAAAACGAGAGACACTTCCACTTCCAGAAAAATTCGAAGAATTATGTGAAATGTCGAGTCC</canonical>
            <polymorphic>CAGCAGGGATCAGTTTATTACGGATGCACTGATTCTGGATGTGAATGCGATGAAAACATCATCATGCTGCTAGAAATGTCAAAAGCGGAAAGACAAGGATTATATCGATTGGAAGTTGAAGAGAAAACTCAACAAGTCGTACAGAAGTTGTTTGCTGAACTGAACTACAGTACTCCAAATATGGATCCTCTAGATATAATTGACAATTTGGTTTCTCGGTTTGCATGTCCACGAAAACCTCTCCCCTGTGATGACAGATATTGTGCATTATATTTATTTTTTGGAGATGTAAGTTTTTTCATTCCAAATGAAATTTTTAAAATTGATTTCAGATCTTCGAATACTTCTCGAAACAAAGTGCAAAACTTTTCGATTTGAATATTGGAGTGGAGAGACAATATCGTGTTTTGAGTGCTTATCCAATTCTTCGATACGTTGGATTAATGGCTGAAACGAATGTAAAACAAGTCAAACTGTTTTCTTCTCATGATACGATTGTKGGAGCGATTTTACGAATTCTCACGGATTCCGGAAAATATACAGATTGGCAAGTGTTCGCAGCTCGGATTGTTTTTGAAGTGAGTTAATTTTCACCTACAAAATGCGAAATTTTTCATTTACAGATCTATGAAACCGCTGAAAAAGTAAAGCTGCTTCGCGTTGTATACGATGGGCAGGACATAACATCGTTGGTGAAATTCTGTAAAAGTCTGGAATTCGGATTGTGTCCAGTTTCGGATCTGAAGCAATTCTTGGCAGTTGGAATATTCGAGATGGCCGGATATAAAACTTTTGAGCAAACTTGTAAAGATCATCGGAAAGAATTCTATTTCGTCTGATAAATAAATTTCATTTCTTATTGTGTTGTTGTCGTTTAATGGAAACATTACTGTTGTTGAACAGTGTACAATACCTATGAAACCAGAACGCATCTTAAAAGAAAACGAGAGACACTTCCACTTCCAGAAAAATTCGAAGAATTATGTGAAATGTCGAGTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAGACAATATCGTGTTTTGAG</pcr_primer_p1>
		<pcr_primer_p2>CGGTTTCATAGATCTGTAAATGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAGAGACAATATCGTGTTTTGAGTGCTTATCCAATTCTTCGATACGTTGGATTAATGGCTGAAACGAATGTAAAACAAGTCAAACTGTTTTCTTCTCATGATACGATTGTTGGAGCGATTTTACGAATTCTCACGGATTCCGGAAAATATACAGATTGGCAAGTGTTCGCAGCTCGGATTGTTTTTGAAGTGAGTTAATTTTCACCTACAAAATGCGAAATTTTTCATTTACAGATCTATGAAACCG</canonical_amplicon>
		<polymorphic_amplicon>GAGAGACAATATCGTGTTTTGAGTGCTTATCCAATTCTTCGATACGTTGGATTAATGGCTGAAACGAATGTAAAACAAGTCAAACTGTTTTCTTCTCATGATACGATTGTKGGAGCGATTTTACGAATTCTCACGGATTCCGGAAAATATACAGATTGGCAAGTGTTCGCAGCTCGGATTGTTTTTGAAGTGAGTTAATTTTCACCTACAAAATGCGAAATTTTTCATTTACAGATCTATGAAACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14787</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>677618</contig_pos>
        <strand>+</strand>
        <context>TTTTACGAAT[C/T]CTCACGGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCAAACTGTTTTCTTCTCATGATACGATTGTTGGAGCGATTTTACGAAT</left_flank>
        <right_flank>CTCACGGATTCCGGAAAATATACAGATTGGCAAGTGTTCGCAGCTCGGAT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACGGATGCACTGATTCTGGATGTGAATGCGATGAAAACATCATCATGCTGCTAGAAATGTCAAAAGCGGAAAGACAAGGATTATATCGATTGGAAGTTGAAGAGAAAACTCAACAAGTCGTACAGAAGTTGTTTGCTGAACTGAACTACAGTACTCCAAATATGGATCCTCTAGATATAATTGACAATTTGGTTTCTCGGTTTGCATGTCCACGAAAACCTCTCCCCTGTGATGACAGATATTGTGCATTATATTTATTTTTTGGAGATGTAAGTTTTTTCATTCCAAATGAAATTTTTAAAATTGATTTCAGATCTTCGAATACTTCTCGAAACAAAGTGCAAAACTTTTCGATTTGAATATTGGAGTGGAGAGACAATATCGTGTTTTGAGTGCTTATCCAATTCTTCGATACGTTGGATTAATGGCTGAAACGAATGTAAAACAAGTCAAACTGTTTTCTTCTCATGATACGATTGTTGGAGCGATTTTACGAATTCTCACGGATTCCGGAAAATATACAGATTGGCAAGTGTTCGCAGCTCGGATTGTTTTTGAAGTGAGTTAATTTTCACCTACAAAATGCGAAATTTTTCATTTACAGATCTATGAAACCGCTGAAAAAGTAAAGCTGCTTCGCGTTGTATACGATGGGCAGGACATAACATCGTTGGTGAAATTCTGTAAAAGTCTGGAATTCGGATTGTGTCCAGTTTCGGATCTGAAGCAATTCTTGGCAGTTGGAATATTCGAGATGGCCGGATATAAAACTTTTGAGCAAACTTGTAAAGATCATCGGAAAGAATTCTATTTCGTCTGATAAATAAATTTCATTTCTTATTGTGTTGTTGTCGTTTAATGGAAACATTACTGTTGTTGAACAGTGTACAATACCTATGAAACCAGAACGCATCTTAAAAGAAAACGAGAGACACTTCCACTTCCAGAAAAATTCGAAGAATTATGTGAAATGTCGAGTCCGCCGGGAGAAGACTTTGA</canonical>
            <polymorphic>TACGGATGCACTGATTCTGGATGTGAATGCGATGAAAACATCATCATGCTGCTAGAAATGTCAAAAGCGGAAAGACAAGGATTATATCGATTGGAAGTTGAAGAGAAAACTCAACAAGTCGTACAGAAGTTGTTTGCTGAACTGAACTACAGTACTCCAAATATGGATCCTCTAGATATAATTGACAATTTGGTTTCTCGGTTTGCATGTCCACGAAAACCTCTCCCCTGTGATGACAGATATTGTGCATTATATTTATTTTTTGGAGATGTAAGTTTTTTCATTCCAAATGAAATTTTTAAAATTGATTTCAGATCTTCGAATACTTCTCGAAACAAAGTGCAAAACTTTTCGATTTGAATATTGGAGTGGAGAGACAATATCGTGTTTTGAGTGCTTATCCAATTCTTCGATACGTTGGATTAATGGCTGAAACGAATGTAAAACAAGTCAAACTGTTTTCTTCTCATGATACGATTGTTGGAGCGATTTTACGAATYCTCACGGATTCCGGAAAATATACAGATTGGCAAGTGTTCGCAGCTCGGATTGTTTTTGAAGTGAGTTAATTTTCACCTACAAAATGCGAAATTTTTCATTTACAGATCTATGAAACCGCTGAAAAAGTAAAGCTGCTTCGCGTTGTATACGATGGGCAGGACATAACATCGTTGGTGAAATTCTGTAAAAGTCTGGAATTCGGATTGTGTCCAGTTTCGGATCTGAAGCAATTCTTGGCAGTTGGAATATTCGAGATGGCCGGATATAAAACTTTTGAGCAAACTTGTAAAGATCATCGGAAAGAATTCTATTTCGTCTGATAAATAAATTTCATTTCTTATTGTGTTGTTGTCGTTTAATGGAAACATTACTGTTGTTGAACAGTGTACAATACCTATGAAACCAGAACGCATCTTAAAAGAAAACGAGAGACACTTCCACTTCCAGAAAAATTCGAAGAATTATGTGAAATGTCGAGTCCGCCGGGAGAAGACTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>293 203 124 108 93 89 49 23 18</canonical_bands>
                <polymorphic_bands>296 293 124 108 89 49 23 18</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>496 200 196 108</canonical_bands>
                <polymorphic_bands>696 196 108</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>179 124 107 101 93 89 75 71 40 33 23 22 18 9 9 7</canonical_bands>
                <polymorphic_bands>179 164 124 107 101 89 75 40 33 23 22 18 9 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAGACAATATCGTGTTTTGAG</pcr_primer_p1>
		<pcr_primer_p2>CGGTTTCATAGATCTGTAAATGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAGAGACAATATCGTGTTTTGAGTGCTTATCCAATTCTTCGATACGTTGGATTAATGGCTGAAACGAATGTAAAACAAGTCAAACTGTTTTCTTCTCATGATACGATTGTTGGAGCGATTTTACGAATTCTCACGGATTCCGGAAAATATACAGATTGGCAAGTGTTCGCAGCTCGGATTGTTTTTGAAGTGAGTTAATTTTCACCTACAAAATGCGAAATTTTTCATTTACAGATCTATGAAACCG</canonical_amplicon>
		<polymorphic_amplicon>GAGAGACAATATCGTGTTTTGAGTGCTTATCCAATTCTTCGATACGTTGGATTAATGGCTGAAACGAATGTAAAACAAGTCAAACTGTTTTCTTCTCATGATACGATTGTTGGAGCGATTTTACGAATYCTCACGGATTCCGGAAAATATACAGATTGGCAAGTGTTCGCAGCTCGGATTGTTTTTGAAGTGAGTTAATTTTCACCTACAAAATGCGAAATTTTTCATTTACAGATCTATGAAACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14788</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>677704</contig_pos>
        <strand>+</strand>
        <context>CCTACAAAAT[A/G]YGAWATTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTCGCAGCTCGGATTGTTTTTGAAGTGAGTTAATTTTCACCTACAAAAT</left_flank>
        <right_flank>CGAAATTTTTCATTTACAGATCTATGAAACCGCTGAAAAAGTAAAGCTGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGATTGGAAGTTGAAGAGAAAACTCAACAAGTCGTACAGAAGTTGTTTGCTGAACTGAACTACAGTACTCCAAATATGGATCCTCTAGATATAATTGACAATTTGGTTTCTCGGTTTGCATGTCCACGAAAACCTCTCCCCTGTGATGACAGATATTGTGCATTATATTTATTTTTTGGAGATGTAAGTTTTTTCATTCCAAATGAAATTTTTAAAATTGATTTCAGATCTTCGAATACTTCTCGAAACAAAGTGCAAAACTTTTCGATTTGAATATTGGAGTGGAGAGACAATATCGTGTTTTGAGTGCTTATCCAATTCTTCGATACGTTGGATTAATGGCTGAAACGAATGTAAAACAAGTCAAACTGTTTTCTTCTCATGATACGATTGTTGGAGCGATTTTACGAATTCTCACGGATTCCGGAAAATATACAGATTGGCAAGTGTTCGCAGCTCGGATTGTTTTTGAAGTGAGTTAATTTTCACCTACAAAATGCGAAATTTTTCATTTACAGATCTATGAAACCGCTGAAAAAGTAAAGCTGCTTCGCGTTGTATACGATGGGCAGGACATAACATCGTTGGTGAAATTCTGTAAAAGTCTGGAATTCGGATTGTGTCCAGTTTCGGATCTGAAGCAATTCTTGGCAGTTGGAATATTCGAGATGGCCGGATATAAAACTTTTGAGCAAACTTGTAAAGATCATCGGAAAGAATTCTATTTCGTCTGATAAATAAATTTCATTTCTTATTGTGTTGTTGTCGTTTAATGGAAACATTACTGTTGTTGAACAGTGTACAATACCTATGAAACCAGAACGCATCTTAAAAGAAAACGAGAGACACTTCCACTTCCAGAAAAATTCGAAGAATTATGTGAAATGTCGAGTCCGCCGGGAGAAGACTTTGAGAAAGTTCTTAGTACTAGCAGTCGACCTCACAACTACTGTAGTTCTGAATCATCAATGTCAGAAGATGATGGAGAAAATGAGCATG</canonical>
            <polymorphic>TCGATTGGAAGTTGAAGAGAAAACTCAACAAGTCGTACAGAAGTTGTTTGCTGAACTGAACTACAGTACTCCAAATATGGATCCTCTAGATATAATTGACAATTTGGTTTCTCGGTTTGCATGTCCACGAAAACCTCTCCCCTGTGATGACAGATATTGTGCATTATATTTATTTTTTGGAGATGTAAGTTTTTTCATTCCAAATGAAATTTTTAAAATTGATTTCAGATCTTCGAATACTTCTCGAAACAAAGTGCAAAACTTTTCGATTTGAATATTGGAGTGGAGAGACAATATCGTGTTTTGAGTGCTTATCCAATTCTTCGATACGTTGGATTAATGGCTGAAACGAATGTAAAACAAGTCAAACTGTTTTCTTCTCATGATACGATTGTTGGAGCGATTTTACGAATTCTCACGGATTCCGGAAAATATACAGATTGGCAAGTGTTCGCAGCTCGGATTGTTTTTGAAGTGAGTTAATTTTCACCTACAAAATRCGAAATTTTTCATTTACAGATCTATGAAACCGCTGAAAAAGTAAAGCTGCTTCGCGTTGTATACGATGGGCAGGACATAACATCGTTGGTGAAATTCTGTAAAAGTCTGGAATTCGGATTGTGTCCAGTTTCGGATCTGAAGCAATTCTTGGCAGTTGGAATATTCGAGATGGCCGGATATAAAACTTTTGAGCAAACTTGTAAAGATCATCGGAAAGAATTCTATTTCGTCTGATAAATAAATTTCATTTCTTATTGTGTTGTTGTCGTTTAATGGAAACATTACTGTTGTTGAACAGTGTACAATACCTATGAAACCAGAACGCATCTTAAAAGAAAACGAGAGACACTTCCACTTCCAGAAAAATTCGAAGAATTATGTGAAATGTCGAGTCCGCCGGGAGAAGACTTTGAGAAAGTTCTTAGTACTAGCAGTCGACCTCACAACTACTGTAGTTCTGAATCATCAATGTCAGAAGATGATGGAGAAAATGAGCATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAGTCAAACTGTTTTCTTCTC</pcr_primer_p1>
		<pcr_primer_p2>TCCAGACTTTTACAGAATTTCAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACAAGTCAAACTGTTTTCTTCTCATGATACGATTGTTGGAGCGATTTTACGAATTCTCACGGATTCCGGAAAATATACAGATTGGCAAGTGTTCGCAGCTCGGATTGTTTTTGAAGTGAGTTAATTTTCACCTACAAAATGCGAAATTTTTCATTTACAGATCTATGAAACCGCTGAAAAAGTAAAGCTGCTTCGCGTTGTATACGATGGGCAGGACATAACATCGTTGGTGAAATTCTGTAAAAGTCTGGA</canonical_amplicon>
		<polymorphic_amplicon>ACAAGTCAAACTGTTTTCTTCTCATGATACGATTGTTGGAGCGATTTTACGAATTCTCACGGATTCCGGAAAATATACAGATTGGCAAGTGTTCGCAGCTCGGATTGTTTTTGAAGTGAGTTAATTTTCACCTACAAAATRCGAAATTTTTCATTTACAGATCTATGAAACCGCTGAAAAAGTAAAGCTGCTTCGCGTTGTATACGATGGGCAGGACATAACATCGTTGGTGAAATTCTGTAAAAGTCTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14789</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>677705</contig_pos>
        <strand>+</strand>
        <context>CTACAAAATR[C/T]GAWATTTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCGCAGCTCGGATTGTTTTTGAAGTGAGTTAATTTTCACCTACAAAATG</left_flank>
        <right_flank>GAAATTTTTCATTTACAGATCTATGAAACCGCTGAAAAAGTAAAGCTGCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATTGGAAGTTGAAGAGAAAACTCAACAAGTCGTACAGAAGTTGTTTGCTGAACTGAACTACAGTACTCCAAATATGGATCCTCTAGATATAATTGACAATTTGGTTTCTCGGTTTGCATGTCCACGAAAACCTCTCCCCTGTGATGACAGATATTGTGCATTATATTTATTTTTTGGAGATGTAAGTTTTTTCATTCCAAATGAAATTTTTAAAATTGATTTCAGATCTTCGAATACTTCTCGAAACAAAGTGCAAAACTTTTCGATTTGAATATTGGAGTGGAGAGACAATATCGTGTTTTGAGTGCTTATCCAATTCTTCGATACGTTGGATTAATGGCTGAAACGAATGTAAAACAAGTCAAACTGTTTTCTTCTCATGATACGATTGTTGGAGCGATTTTACGAATTCTCACGGATTCCGGAAAATATACAGATTGGCAAGTGTTCGCAGCTCGGATTGTTTTTGAAGTGAGTTAATTTTCACCTACAAAATGCGAAATTTTTCATTTACAGATCTATGAAACCGCTGAAAAAGTAAAGCTGCTTCGCGTTGTATACGATGGGCAGGACATAACATCGTTGGTGAAATTCTGTAAAAGTCTGGAATTCGGATTGTGTCCAGTTTCGGATCTGAAGCAATTCTTGGCAGTTGGAATATTCGAGATGGCCGGATATAAAACTTTTGAGCAAACTTGTAAAGATCATCGGAAAGAATTCTATTTCGTCTGATAAATAAATTTCATTTCTTATTGTGTTGTTGTCGTTTAATGGAAACATTACTGTTGTTGAACAGTGTACAATACCTATGAAACCAGAACGCATCTTAAAAGAAAACGAGAGACACTTCCACTTCCAGAAAAATTCGAAGAATTATGTGAAATGTCGAGTCCGCCGGGAGAAGACTTTGAGAAAGTTCTTAGTACTAGCAGTCGACCTCACAACTACTGTAGTTCTGAATCATCAATGTCAGAAGATGATGGAGAAAATGAGCATGT</canonical>
            <polymorphic>CGATTGGAAGTTGAAGAGAAAACTCAACAAGTCGTACAGAAGTTGTTTGCTGAACTGAACTACAGTACTCCAAATATGGATCCTCTAGATATAATTGACAATTTGGTTTCTCGGTTTGCATGTCCACGAAAACCTCTCCCCTGTGATGACAGATATTGTGCATTATATTTATTTTTTGGAGATGTAAGTTTTTTCATTCCAAATGAAATTTTTAAAATTGATTTCAGATCTTCGAATACTTCTCGAAACAAAGTGCAAAACTTTTCGATTTGAATATTGGAGTGGAGAGACAATATCGTGTTTTGAGTGCTTATCCAATTCTTCGATACGTTGGATTAATGGCTGAAACGAATGTAAAACAAGTCAAACTGTTTTCTTCTCATGATACGATTGTTGGAGCGATTTTACGAATTCTCACGGATTCCGGAAAATATACAGATTGGCAAGTGTTCGCAGCTCGGATTGTTTTTGAAGTGAGTTAATTTTCACCTACAAAATGYGAAATTTTTCATTTACAGATCTATGAAACCGCTGAAAAAGTAAAGCTGCTTCGCGTTGTATACGATGGGCAGGACATAACATCGTTGGTGAAATTCTGTAAAAGTCTGGAATTCGGATTGTGTCCAGTTTCGGATCTGAAGCAATTCTTGGCAGTTGGAATATTCGAGATGGCCGGATATAAAACTTTTGAGCAAACTTGTAAAGATCATCGGAAAGAATTCTATTTCGTCTGATAAATAAATTTCATTTCTTATTGTGTTGTTGTCGTTTAATGGAAACATTACTGTTGTTGAACAGTGTACAATACCTATGAAACCAGAACGCATCTTAAAAGAAAACGAGAGACACTTCCACTTCCAGAAAAATTCGAAGAATTATGTGAAATGTCGAGTCCGCCGGGAGAAGACTTTGAGAAAGTTCTTAGTACTAGCAGTCGACCTCACAACTACTGTAGTTCTGAATCATCAATGTCAGAAGATGATGGAGAAAATGAGCATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAGTCAAACTGTTTTCTTCTC</pcr_primer_p1>
		<pcr_primer_p2>TCCAGACTTTTACAGAATTTCAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACAAGTCAAACTGTTTTCTTCTCATGATACGATTGTTGGAGCGATTTTACGAATTCTCACGGATTCCGGAAAATATACAGATTGGCAAGTGTTCGCAGCTCGGATTGTTTTTGAAGTGAGTTAATTTTCACCTACAAAATGCGAAATTTTTCATTTACAGATCTATGAAACCGCTGAAAAAGTAAAGCTGCTTCGCGTTGTATACGATGGGCAGGACATAACATCGTTGGTGAAATTCTGTAAAAGTCTGGA</canonical_amplicon>
		<polymorphic_amplicon>ACAAGTCAAACTGTTTTCTTCTCATGATACGATTGTTGGAGCGATTTTACGAATTCTCACGGATTCCGGAAAATATACAGATTGGCAAGTGTTCGCAGCTCGGATTGTTTTTGAAGTGAGTTAATTTTCACCTACAAAATGYGAAATTTTTCATTTACAGATCTATGAAACCGCTGAAAAAGTAAAGCTGCTTCGCGTTGTATACGATGGGCAGGACATAACATCGTTGGTGAAATTCTGTAAAAGTCTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14790</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>677708</contig_pos>
        <strand>+</strand>
        <context>CAAAATRYGA[A/T]ATTTTTCATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCAGCTCGGATTGTTTTTGAAGTGAGTTAATTTTCACCTACAAAATGCGA</left_flank>
        <right_flank>ATTTTTCATTTACAGATCTATGAAACCGCTGAAAAAGTAAAGCTGCTTCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGAAGTTGAAGAGAAAACTCAACAAGTCGTACAGAAGTTGTTTGCTGAACTGAACTACAGTACTCCAAATATGGATCCTCTAGATATAATTGACAATTTGGTTTCTCGGTTTGCATGTCCACGAAAACCTCTCCCCTGTGATGACAGATATTGTGCATTATATTTATTTTTTGGAGATGTAAGTTTTTTCATTCCAAATGAAATTTTTAAAATTGATTTCAGATCTTCGAATACTTCTCGAAACAAAGTGCAAAACTTTTCGATTTGAATATTGGAGTGGAGAGACAATATCGTGTTTTGAGTGCTTATCCAATTCTTCGATACGTTGGATTAATGGCTGAAACGAATGTAAAACAAGTCAAACTGTTTTCTTCTCATGATACGATTGTTGGAGCGATTTTACGAATTCTCACGGATTCCGGAAAATATACAGATTGGCAAGTGTTCGCAGCTCGGATTGTTTTTGAAGTGAGTTAATTTTCACCTACAAAATGCGAAATTTTTCATTTACAGATCTATGAAACCGCTGAAAAAGTAAAGCTGCTTCGCGTTGTATACGATGGGCAGGACATAACATCGTTGGTGAAATTCTGTAAAAGTCTGGAATTCGGATTGTGTCCAGTTTCGGATCTGAAGCAATTCTTGGCAGTTGGAATATTCGAGATGGCCGGATATAAAACTTTTGAGCAAACTTGTAAAGATCATCGGAAAGAATTCTATTTCGTCTGATAAATAAATTTCATTTCTTATTGTGTTGTTGTCGTTTAATGGAAACATTACTGTTGTTGAACAGTGTACAATACCTATGAAACCAGAACGCATCTTAAAAGAAAACGAGAGACACTTCCACTTCCAGAAAAATTCGAAGAATTATGTGAAATGTCGAGTCCGCCGGGAGAAGACTTTGAGAAAGTTCTTAGTACTAGCAGTCGACCTCACAACTACTGTAGTTCTGAATCATCAATGTCAGAAGATGATGGAGAAAATGAGCATGTTTT</canonical>
            <polymorphic>TTGGAAGTTGAAGAGAAAACTCAACAAGTCGTACAGAAGTTGTTTGCTGAACTGAACTACAGTACTCCAAATATGGATCCTCTAGATATAATTGACAATTTGGTTTCTCGGTTTGCATGTCCACGAAAACCTCTCCCCTGTGATGACAGATATTGTGCATTATATTTATTTTTTGGAGATGTAAGTTTTTTCATTCCAAATGAAATTTTTAAAATTGATTTCAGATCTTCGAATACTTCTCGAAACAAAGTGCAAAACTTTTCGATTTGAATATTGGAGTGGAGAGACAATATCGTGTTTTGAGTGCTTATCCAATTCTTCGATACGTTGGATTAATGGCTGAAACGAATGTAAAACAAGTCAAACTGTTTTCTTCTCATGATACGATTGTTGGAGCGATTTTACGAATTCTCACGGATTCCGGAAAATATACAGATTGGCAAGTGTTCGCAGCTCGGATTGTTTTTGAAGTGAGTTAATTTTCACCTACAAAATGCGAWATTTTTCATTTACAGATCTATGAAACCGCTGAAAAAGTAAAGCTGCTTCGCGTTGTATACGATGGGCAGGACATAACATCGTTGGTGAAATTCTGTAAAAGTCTGGAATTCGGATTGTGTCCAGTTTCGGATCTGAAGCAATTCTTGGCAGTTGGAATATTCGAGATGGCCGGATATAAAACTTTTGAGCAAACTTGTAAAGATCATCGGAAAGAATTCTATTTCGTCTGATAAATAAATTTCATTTCTTATTGTGTTGTTGTCGTTTAATGGAAACATTACTGTTGTTGAACAGTGTACAATACCTATGAAACCAGAACGCATCTTAAAAGAAAACGAGAGACACTTCCACTTCCAGAAAAATTCGAAGAATTATGTGAAATGTCGAGTCCGCCGGGAGAAGACTTTGAGAAAGTTCTTAGTACTAGCAGTCGACCTCACAACTACTGTAGTTCTGAATCATCAATGTCAGAAGATGATGGAGAAAATGAGCATGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>203 203 139 124 108 93 89 23 18</canonical_bands>
                <polymorphic_bands>203 203 182 139 124 108 23 18</polymorphic_bands>
            </assay>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>502 286 137 75</canonical_bands>
                <polymorphic_bands>639 286 75</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>130 124 107 101 93 89 89 75 71 33 23 22 18 9 9 7</canonical_bands>
                <polymorphic_bands>130 124 111 107 101 93 89 75 71 33 23 18 9 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAGTCAAACTGTTTTCTTCTC</pcr_primer_p1>
		<pcr_primer_p2>TCCAGACTTTTACAGAATTTCAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACAAGTCAAACTGTTTTCTTCTCATGATACGATTGTTGGAGCGATTTTACGAATTCTCACGGATTCCGGAAAATATACAGATTGGCAAGTGTTCGCAGCTCGGATTGTTTTTGAAGTGAGTTAATTTTCACCTACAAAATGCGAAATTTTTCATTTACAGATCTATGAAACCGCTGAAAAAGTAAAGCTGCTTCGCGTTGTATACGATGGGCAGGACATAACATCGTTGGTGAAATTCTGTAAAAGTCTGGA</canonical_amplicon>
		<polymorphic_amplicon>ACAAGTCAAACTGTTTTCTTCTCATGATACGATTGTTGGAGCGATTTTACGAATTCTCACGGATTCCGGAAAATATACAGATTGGCAAGTGTTCGCAGCTCGGATTGTTTTTGAAGTGAGTTAATTTTCACCTACAAAATGCGAWATTTTTCATTTACAGATCTATGAAACCGCTGAAAAAGTAAAGCTGCTTCGCGTTGTATACGATGGGCAGGACATAACATCGTTGGTGAAATTCTGTAAAAGTCTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14791</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>678020</contig_pos>
        <strand>+</strand>
        <context>ATACCTATGA[A/G]ACCAGAACGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCGTTTAATGGAAACATTACTGTTGTTGAACAGTGTACAATACCTATGA</left_flank>
        <right_flank>ACCAGAACGCATCTTAAAAGAAAACGAGAGACACTTCCACTTCCAGAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTCTTCGATACGTTGGATTAATGGCTGAAACGAATGTAAAACAAGTCAAACTGTTTTCTTCTCATGATACGATTGTTGGAGCGATTTTACGAATTCTCACGGATTCCGGAAAATATACAGATTGGCAAGTGTTCGCAGCTCGGATTGTTTTTGAAGTGAGTTAATTTTCACCTACAAAATGCGAAATTTTTCATTTACAGATCTATGAAACCGCTGAAAAAGTAAAGCTGCTTCGCGTTGTATACGATGGGCAGGACATAACATCGTTGGTGAAATTCTGTAAAAGTCTGGAATTCGGATTGTGTCCAGTTTCGGATCTGAAGCAATTCTTGGCAGTTGGAATATTCGAGATGGCCGGATATAAAACTTTTGAGCAAACTTGTAAAGATCATCGGAAAGAATTCTATTTCGTCTGATAAATAAATTTCATTTCTTATTGTGTTGTTGTCGTTTAATGGAAACATTACTGTTGTTGAACAGTGTACAATACCTATGAAACCAGAACGCATCTTAAAAGAAAACGAGAGACACTTCCACTTCCAGAAAAATTCGAAGAATTATGTGAAATGTCGAGTCCGCCGGGAGAAGACTTTGAGAAAGTTCTTAGTACTAGCAGTCGACCTCACAACTACTGTAGTTCTGAATCATCAATGTCAGAAGATGATGGAGAAAATGAGCATGTTTTGAAGCATGGAGCACCCGCTGAAGCGTTGACACCAGACTCAGAACGAATGGTAGTTTTAGGAAAAGATTTAGTTCAATCTGCACCCGGAAGTATAGTGCCCACTGAAAACGCTTCATGGATAAATCGAATCAAAAAGTGGGTATGGGGGTACAAAAGCTTGAATCTTATTTCCATTGTTAAAGAGCTGGAGCTTCAATGATGGGAAGTATGCGTCCATCGAGTTCAAGTCAAGAGACACTTCCAAGAGAGGAAACCGAAAAACAACACAAGAAAAAATGGAAAGCAAGATTGTGGTCGACATGGAATAATATT</canonical>
            <polymorphic>CAATTCTTCGATACGTTGGATTAATGGCTGAAACGAATGTAAAACAAGTCAAACTGTTTTCTTCTCATGATACGATTGTTGGAGCGATTTTACGAATTCTCACGGATTCCGGAAAATATACAGATTGGCAAGTGTTCGCAGCTCGGATTGTTTTTGAAGTGAGTTAATTTTCACCTACAAAATGCGAAATTTTTCATTTACAGATCTATGAAACCGCTGAAAAAGTAAAGCTGCTTCGCGTTGTATACGATGGGCAGGACATAACATCGTTGGTGAAATTCTGTAAAAGTCTGGAATTCGGATTGTGTCCAGTTTCGGATCTGAAGCAATTCTTGGCAGTTGGAATATTCGAGATGGCCGGATATAAAACTTTTGAGCAAACTTGTAAAGATCATCGGAAAGAATTCTATTTCGTCTGATAAATAAATTTCATTTCTTATTGTGTTGTTGTCGTTTAATGGAAACATTACTGTTGTTGAACAGTGTACAATACCTATGARACCAGAACGCATCTTAAAAGAAAACGAGAGACACTTCCACTTCCAGAAAAATTCGAAGAATTATGTGAAATGTCGAGTCCGCCGGGAGAAGACTTTGAGAAAGTTCTTAGTACTAGCAGTCGACCTCACAACTACTGTAGTTCTGAATCATCAATGTCAGAAGATGATGGAGAAAATGAGCATGTTTTGAAGCATGGAGCACCCGCTGAAGCGTTGACACCAGACTCAGAACGAATGGTAGTTTTAGGAAAAGATTTAGTTCAATCTGCACCCGGAAGTATAGTGCCCACTGAAAACGCTTCATGGATAAATCGAATCAAAAAGTGGGTATGGGGGTACAAAAGCTTGAATCTTATTTCCATTGTTAAAGAGCTGGAGCTTCAATGATGGGAAGTATGCGTCCATCGAGTTCAAGTCAAGAGACACTTCCAAGAGAGGAAACCGAAAAACAACACAAGAAAAAATGGAAAGCAAGATTGTGGTCGACATGGAATAATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCTTATTGTGTTGTTGTCGT</pcr_primer_p1>
		<pcr_primer_p2>CTCATTTTCTCCATCATCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTCTTATTGTGTTGTTGTCGTTTAATGGAAACATTACTGTTGTTGAACAGTGTACAATACCTATGAAACCAGAACGCATCTTAAAAGAAAACGAGAGACACTTCCACTTCCAGAAAAATTCGAAGAATTATGTGAAATGTCGAGTCCGCCGGGAGAAGACTTTGAGAAAGTTCTTAGTACTAGCAGTCGACCTCACAACTACTGTAGTTCTGAATCATCAATGTCAGAAGATGATGGAGAAAATGAG</canonical_amplicon>
		<polymorphic_amplicon>ATTTCTTATTGTGTTGTTGTCGTTTAATGGAAACATTACTGTTGTTGAACAGTGTACAATACCTATGARACCAGAACGCATCTTAAAAGAAAACGAGAGACACTTCCACTTCCAGAAAAATTCGAAGAATTATGTGAAATGTCGAGTCCGCCGGGAGAAGACTTTGAGAAAGTTCTTAGTACTAGCAGTCGACCTCACAACTACTGTAGTTCTGAATCATCAATGTCAGAAGATGATGGAGAAAATGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14795</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>679433</contig_pos>
        <strand>+</strand>
        <context>GAATCACTGG[C/T]GGACGCCCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTCATCTGATGCGTCTCTTTTCTATGGATTCTTGTCTTGGAATCACTGG</left_flank>
        <right_flank>GGACGCCCTGATCATTCTTGTTGGTTTGTTGGCTATTATGGAGATGTAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAATTGGAGATTTGTGAGACGGAAAAAGTCTCATGTAACTGTCAATGGAGAAGAAACGGAATTCGATACAGAGAAGATGAAGGAGTGGATGATTCTGAAATTGTTTGAAGATAAACCATCTGCACCTTTAGGAATTCATAAAATGATTGAAATCGCTGCGAGAGAGAAAGGAAAAAGAGCTGTAGGCTGTTGGTATAGCCCATCAGAAGCTGTGTTTATCATGAAGTATGACTCTCTTCTAATATTCTAGAATTCTGATTTTCAATTTTTCAGAAAAGCAATCACCGAATCAGCGTCTCCTCTGACTGGTGACACTGTAATGTATCTTTCGATTGATGGAAGAGTTCATATCAGAGATCTTGAAGTAGAGACAAAGCACTGGACGAAAACTCTGATGCTAGTCATAGTAGTAAGATTGGGAGCAGCTGAACTGAATCGTATTTATGTTCCTCATCTGATGCGTCTCTTTTCTATGGATTCTTGTCTTGGAATCACTGGCGGACGCCCTGATCATTCTTGTTGGTTTGTTGGCTATTATGGAGATGTAAGTCGAGGTGCTCAAACTCGAATATTTACAATTTTTCAGCAAGTGATCTACTTGGATCCCCACGTGGCACACGAATACATTCCAATTGATATGGACTTCAACACGAGTCAAGAAGATCCTAAGGTGTGGCTTTTGATTTATACATTTTAACAATTAATTTCTAACAGCAAAAAAAAATTAATCAAAAATTATGTTTTCAGAAGCCCAAAAAGTGTCCGGAGCGAAGTTATCACTGTCGTCTCCTCTCGAAAATGCACTTTCTCGATATGGATCCTTCGTGTGCTCTATGCTTCAGATTTGAGTCTAGGGAGCAGTTTGATCAAGATATGAGGCAGTTGAATTTGGTATGTTAATCGAATTTTTCGAAAACTACAGTAATCCACAAAAACCTTGAAACTTGATATGACTGAAATGGAAAGGTTTCTAATTTTCGACAGTTCAAATTTTGTAGT</canonical>
            <polymorphic>GAAATTGGAGATTTGTGAGACGGAAAAAGTCTCATGTAACTGTCAATGGAGAAGAAACGGAATTCGATACAGAGAAGATGAAGGAGTGGATGATTCTGAAATTGTTTGAAGATAAACCATCTGCACCTTTAGGAATTCATAAAATGATTGAAATCGCTGCGAGAGAGAAAGGAAAAAGAGCTGTAGGCTGTTGGTATAGCCCATCAGAAGCTGTGTTTATCATGAAGTATGACTCTCTTCTAATATTCTAGAATTCTGATTTTCAATTTTTCAGAAAAGCAATCACCGAATCAGCGTCTCCTCTGACTGGTGACACTGTAATGTATCTTTCGATTGATGGAAGAGTTCATATCAGAGATCTTGAAGTAGAGACAAAGCACTGGACGAAAACTCTGATGCTAGTCATAGTAGTAAGATTGGGAGCAGCTGAACTGAATCGTATTTATGTTCCTCATCTGATGCGTCTCTTTTCTATGGATTCTTGTCTTGGAATCACTGGYGGACGCCCTGATCATTCTTGTTGGTTTGTTGGCTATTATGGAGATGTAAGTCGAGGTGCTCAAACTCGAATATTTACAATTTTTCAGCAAGTGATCTACTTGGATCCCCACGTGGCACACGAATACATTCCAATTGATATGGACTTCAACACGAGTCAAGAAGATCCTAAGGTGTGGCTTTTGATTTATACATTTTAACAATTAATTTCTAACAGCAAAAAAAAATTAATCAAAAATTATGTTTTCAGAAGCCCAAAAAGTGTCCGGAGCGAAGTTATCACTGTCGTCTCCTCTCGAAAATGCACTTTCTCGATATGGATCCTTCGTGTGCTCTATGCTTCAGATTTGAGTCTAGGGAGCAGTTTGATCAAGATATGAGGCAGTTGAATTTGGTATGTTAATCGAATTTTTCGAAAACTACAGTAATCCACAAAAACCTTGAAACTTGATATGACTGAAATGGAAAGGTTTCTAATTTTCGACAGTTCAAATTTTGTAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGACTGGTGACACTGTAATGTA</pcr_primer_p1>
		<pcr_primer_p2>TCGACTTACATCTCCATAATAGC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTGACTGGTGACACTGTAATGTATCTTTCGATTGATGGAAGAGTTCATATCAGAGATCTTGAAGTAGAGACAAAGCACTGGACGAAAACTCTGATGCTAGTCATAGTAGTAAGATTGGGAGCAGCTGAACTGAATCGTATTTATGTTCCTCATCTGATGCGTCTCTTTTCTATGGATTCTTGTCTTGGAATCACTGGCGGACGCCCTGATCATTCTTGTTGGTTTGTTGGCTATTATGGAGATGTAAGTCGA</canonical_amplicon>
		<polymorphic_amplicon>CTGACTGGTGACACTGTAATGTATCTTTCGATTGATGGAAGAGTTCATATCAGAGATCTTGAAGTAGAGACAAAGCACTGGACGAAAACTCTGATGCTAGTCATAGTAGTAAGATTGGGAGCAGCTGAACTGAATCGTATTTATGTTCCTCATCTGATGCGTCTCTTTTCTATGGATTCTTGTCTTGGAATCACTGGYGGACGCCCTGATCATTCTTGTTGGTTTGTTGGCTATTATGGAGATGTAAGTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14796</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>684806</contig_pos>
        <strand>+</strand>
        <context>CCTTCTTTTT[A/G]AATATTCTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTCGTCATAATAATGCCTTTTAATCCCCAACCCCTTTTCCCTTCTTTTT</left_flank>
        <right_flank>AATATTCTTTTCCATCAATCCGATGTTCCTTTTTTTCCGGGTAAAATACT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTCTATTTTTTTAGTCATTTTTAAAACTTTTCATCGAAAATTCGGTGAATTCTCTTTCAAATATCATAAAAATCTATCATTTTCACTCAAACTGAGCAAGTTTATGAGTAAATTTTCGAATTTTCGAAAGATTTTTCAATGAAAACGTACAAAAATATTTAATTTCAAACTACAAACTTTGAAAAGGCTTTTCTATTACAGAGGACCCTTCTATTTTCCCAACTTCCTCTCGAAGGGCCCTTCTATTAGAGGGGTCGTTCTATTGAAGGGCAATTCTAATGAAGGTTTTACTTTAAATAGATTATTTCAGGAGCACCTCAAAGCTACTCGTCCATCCATCACTCAGGAAGACTTGCACAAAGGGATCGAGAAAATGAAAAAAATTCAAATCGATGAAAAATAGATTACGGCTTTTTCCGAATCCCCTTCCTCTCCATTTTTAATCATGTTCGTCATAATAATGCCTTTTAATCCCCAACCCCTTTTCCCTTCTTTTTGAATATTCTTTTCCATCAATCCGATGTTCCTTTTTTTCCGGGTAAAATACTACCATCGTGTAGTAGTTCCATCCAAATCCCCGTGCCATTTTCTTATTCTTTAACAATTCTTTTGGGTGATTCGATTCGACGATAAATTCCATTGCAAGAAGTTTATTGGTTTCAAATATATACAAGAAAATGAGATCATGAAAAAGTTTTAAGTAATATTGAATTCATGTGAAAAGAAAAAAGCAAAGATACTTTAAAACAAATTTGGAGAGAAGTTGAGGGTAAATGAAGAAGAAGAAAACTGAACAGTGTGAGAAGTTTAAAGAAGAAAATTCAGAATTTAGAAAATCTATTCTTGGAATTCAAGTTCATCAAGAACTCGATCAATATGCTCGACAGCAGACAATCCGAGACCTGCCCAAGTTTTGTCATCAAGTACTTTGACGTGAGATTGGAGAAGATCCATATCTGTTTGAGCACCTGTATCACGAAGAGAATCCACATTATCTT</canonical>
            <polymorphic>CCTTCTATTTTTTTAGTCATTTTTAAAACTTTTCATCGAAAATTCGGTGAATTCTCTTTCAAATATCATAAAAATCTATCATTTTCACTCAAACTGAGCAAGTTTATGAGTAAATTTTCGAATTTTCGAAAGATTTTTCAATGAAAACGTACAAAAATATTTAATTTCAAACTACAAACTTTGAAAAGGCTTTTCTATTACAGAGGACCCTTCTATTTTCCCAACTTCCTCTCGAAGGGCCCTTCTATTAGAGGGGTCGTTCTATTGAAGGGCAATTCTAATGAAGGTTTTACTTTAAATAGATTATTTCAGGAGCACCTCAAAGCTACTCGTCCATCCATCACTCAGGAAGACTTGCACAAAGGGATCGAGAAAATGAAAAAAATTCAAATCGATGAAAAATAGATTACGGCTTTTTCCGAATCCCCTTCCTCTCCATTTTTAATCATGTTCGTCATAATAATGCCTTTTAATCCCCAACCCCTTTTCCCTTCTTTTTRAATATTCTTTTCCATCAATCCGATGTTCCTTTTTTTCCGGGTAAAATACTACCATCGTGTAGTAGTTCCATCCAAATCCCCGTGCCATTTTCTTATTCTTTAACAATTCTTTTGGGTGATTCGATTCGACGATAAATTCCATTGCAAGAAGTTTATTGGTTTCAAATATATACAAGAAAATGAGATCATGAAAAAGTTTTAAGTAATATTGAATTCATGTGAAAAGAAAAAAGCAAAGATACTTTAAAACAAATTTGGAGAGAAGTTGAGGGTAAATGAAGAAGAAGAAAACTGAACAGTGTGAGAAGTTTAAAGAAGAAAATTCAGAATTTAGAAAATCTATTCTTGGAATTCAAGTTCATCAAGAACTCGATCAATATGCTCGACAGCAGACAATCCGAGACCTGCCCAAGTTTTGTCATCAAGTACTTTGACGTGAGATTGGAGAAGATCCATATCTGTTTGAGCACCTGTATCACGAAGAGAATCCACATTATCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAAAAATAGATTACGGCTTTT</pcr_primer_p1>
		<pcr_primer_p2>AATGGAATTTATCGTCGAATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGAAAAATAGATTACGGCTTTTTCCGAATCCCCTTCCTCTCCATTTTTAATCATGTTCGTCATAATAATGCCTTTTAATCCCCAACCCCTTTTCCCTTCTTTTTGAATATTCTTTTCCATCAATCCGATGTTCCTTTTTTTCCGGGTAAAATACTACCATCGTGTAGTAGTTCCATCCAAATCCCCGTGCCATTTTCTTATTCTTTAACAATTCTTTTGGGTGATTCGATTCGACGATAAATTCCATT</canonical_amplicon>
		<polymorphic_amplicon>ATGAAAAATAGATTACGGCTTTTTCCGAATCCCCTTCCTCTCCATTTTTAATCATGTTCGTCATAATAATGCCTTTTAATCCCCAACCCCTTTTCCCTTCTTTTTRAATATTCTTTTCCATCAATCCGATGTTCCTTTTTTTCCGGGTAAAATACTACCATCGTGTAGTAGTTCCATCCAAATCCCCGTGCCATTTTCTTATTCTTTAACAATTCTTTTGGGTGATTCGATTCGACGATAAATTCCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14797</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>684817</contig_pos>
        <strand>+</strand>
        <context>AATATTCTTT[C/T]CCATCAATCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATGCCTTTTAATCCCCAACCCCTTTTCCCTTCTTTTTGAATATTCTTT</left_flank>
        <right_flank>CCATCAATCCGATGTTCCTTTTTTTCCGGGTAAAATACTACCATCGTGTA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAGTCATTTTTAAAACTTTTCATCGAAAATTCGGTGAATTCTCTTTCAAATATCATAAAAATCTATCATTTTCACTCAAACTGAGCAAGTTTATGAGTAAATTTTCGAATTTTCGAAAGATTTTTCAATGAAAACGTACAAAAATATTTAATTTCAAACTACAAACTTTGAAAAGGCTTTTCTATTACAGAGGACCCTTCTATTTTCCCAACTTCCTCTCGAAGGGCCCTTCTATTAGAGGGGTCGTTCTATTGAAGGGCAATTCTAATGAAGGTTTTACTTTAAATAGATTATTTCAGGAGCACCTCAAAGCTACTCGTCCATCCATCACTCAGGAAGACTTGCACAAAGGGATCGAGAAAATGAAAAAAATTCAAATCGATGAAAAATAGATTACGGCTTTTTCCGAATCCCCTTCCTCTCCATTTTTAATCATGTTCGTCATAATAATGCCTTTTAATCCCCAACCCCTTTTCCCTTCTTTTTGAATATTCTTTTCCATCAATCCGATGTTCCTTTTTTTCCGGGTAAAATACTACCATCGTGTAGTAGTTCCATCCAAATCCCCGTGCCATTTTCTTATTCTTTAACAATTCTTTTGGGTGATTCGATTCGACGATAAATTCCATTGCAAGAAGTTTATTGGTTTCAAATATATACAAGAAAATGAGATCATGAAAAAGTTTTAAGTAATATTGAATTCATGTGAAAAGAAAAAAGCAAAGATACTTTAAAACAAATTTGGAGAGAAGTTGAGGGTAAATGAAGAAGAAGAAAACTGAACAGTGTGAGAAGTTTAAAGAAGAAAATTCAGAATTTAGAAAATCTATTCTTGGAATTCAAGTTCATCAAGAACTCGATCAATATGCTCGACAGCAGACAATCCGAGACCTGCCCAAGTTTTGTCATCAAGTACTTTGACGTGAGATTGGAGAAGATCCATATCTGTTTGAGCACCTGTATCACGAAGAGAATCCACATTATCTTCGATGAAACGG</canonical>
            <polymorphic>TTTAGTCATTTTTAAAACTTTTCATCGAAAATTCGGTGAATTCTCTTTCAAATATCATAAAAATCTATCATTTTCACTCAAACTGAGCAAGTTTATGAGTAAATTTTCGAATTTTCGAAAGATTTTTCAATGAAAACGTACAAAAATATTTAATTTCAAACTACAAACTTTGAAAAGGCTTTTCTATTACAGAGGACCCTTCTATTTTCCCAACTTCCTCTCGAAGGGCCCTTCTATTAGAGGGGTCGTTCTATTGAAGGGCAATTCTAATGAAGGTTTTACTTTAAATAGATTATTTCAGGAGCACCTCAAAGCTACTCGTCCATCCATCACTCAGGAAGACTTGCACAAAGGGATCGAGAAAATGAAAAAAATTCAAATCGATGAAAAATAGATTACGGCTTTTTCCGAATCCCCTTCCTCTCCATTTTTAATCATGTTCGTCATAATAATGCCTTTTAATCCCCAACCCCTTTTCCCTTCTTTTTGAATATTCTTTYCCATCAATCCGATGTTCCTTTTTTTCCGGGTAAAATACTACCATCGTGTAGTAGTTCCATCCAAATCCCCGTGCCATTTTCTTATTCTTTAACAATTCTTTTGGGTGATTCGATTCGACGATAAATTCCATTGCAAGAAGTTTATTGGTTTCAAATATATACAAGAAAATGAGATCATGAAAAAGTTTTAAGTAATATTGAATTCATGTGAAAAGAAAAAAGCAAAGATACTTTAAAACAAATTTGGAGAGAAGTTGAGGGTAAATGAAGAAGAAGAAAACTGAACAGTGTGAGAAGTTTAAAGAAGAAAATTCAGAATTTAGAAAATCTATTCTTGGAATTCAAGTTCATCAAGAACTCGATCAATATGCTCGACAGCAGACAATCCGAGACCTGCCCAAGTTTTGTCATCAAGTACTTTGACGTGAGATTGGAGAAGATCCATATCTGTTTGAGCACCTGTATCACGAAGAGAATCCACATTATCTTCGATGAAACGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAAAAATAGATTACGGCTTTT</pcr_primer_p1>
		<pcr_primer_p2>AATGGAATTTATCGTCGAATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGAAAAATAGATTACGGCTTTTTCCGAATCCCCTTCCTCTCCATTTTTAATCATGTTCGTCATAATAATGCCTTTTAATCCCCAACCCCTTTTCCCTTCTTTTTGAATATTCTTTTCCATCAATCCGATGTTCCTTTTTTTCCGGGTAAAATACTACCATCGTGTAGTAGTTCCATCCAAATCCCCGTGCCATTTTCTTATTCTTTAACAATTCTTTTGGGTGATTCGATTCGACGATAAATTCCATT</canonical_amplicon>
		<polymorphic_amplicon>ATGAAAAATAGATTACGGCTTTTTCCGAATCCCCTTCCTCTCCATTTTTAATCATGTTCGTCATAATAATGCCTTTTAATCCCCAACCCCTTTTCCCTTCTTTTTGAATATTCTTTYCCATCAATCCGATGTTCCTTTTTTTCCGGGTAAAATACTACCATCGTGTAGTAGTTCCATCCAAATCCCCGTGCCATTTTCTTATTCTTTAACAATTCTTTTGGGTGATTCGATTCGACGATAAATTCCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14798</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>684858</contig_pos>
        <strand></strand>
        <context>TAAAATACTA[C/T]CATCGTGTAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATATTCTTTTCCATCAATCCGATGTTCCTTTTTTTCCGGGTAAAATACTA</left_flank>
        <right_flank>CATCGTGTAGTAGTTCCATCCAAATCCCCGTGCCATTTTCTTATTCTTTA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCTTTCAAATATCATAAAAATCTATCATTTTCACTCAAACTGAGCAAGTTTATGAGTAAATTTTCGAATTTTCGAAAGATTTTTCAATGAAAACGTACAAAAATATTTAATTTCAAACTACAAACTTTGAAAAGGCTTTTCTATTACAGAGGACCCTTCTATTTTCCCAACTTCCTCTCGAAGGGCCCTTCTATTAGAGGGGTCGTTCTATTGAAGGGCAATTCTAATGAAGGTTTTACTTTAAATAGATTATTTCAGGAGCACCTCAAAGCTACTCGTCCATCCATCACTCAGGAAGACTTGCACAAAGGGATCGAGAAAATGAAAAAAATTCAAATCGATGAAAAATAGATTACGGCTTTTTCCGAATCCCCTTCCTCTCCATTTTTAATCATGTTCGTCATAATAATGCCTTTTAATCCCCAACCCCTTTTCCCTTCTTTTTGAATATTCTTTTCCATCAATCCGATGTTCCTTTTTTTCCGGGTAAAATACTACCATCGTGTAGTAGTTCCATCCAAATCCCCGTGCCATTTTCTTATTCTTTAACAATTCTTTTGGGTGATTCGATTCGACGATAAATTCCATTGCAAGAAGTTTATTGGTTTCAAATATATACAAGAAAATGAGATCATGAAAAAGTTTTAAGTAATATTGAATTCATGTGAAAAGAAAAAAGCAAAGATACTTTAAAACAAATTTGGAGAGAAGTTGAGGGTAAATGAAGAAGAAGAAAACTGAACAGTGTGAGAAGTTTAAAGAAGAAAATTCAGAATTTAGAAAATCTATTCTTGGAATTCAAGTTCATCAAGAACTCGATCAATATGCTCGACAGCAGACAATCCGAGACCTGCCCAAGTTTTGTCATCAAGTACTTTGACGTGAGATTGGAGAAGATCCATATCTGTTTGAGCACCTGTATCACGAAGAGAATCCACATTATCTTCGATGAAACGGAGGCGGTGACGGACGATCTCAGCTTCGCTTTTTCTAGAAAT</canonical>
            <polymorphic>TCTCTTTCAAATATCATAAAAATCTATCATTTTCACTCAAACTGAGCAAGTTTATGAGTAAATTTTCGAATTTTCGAAAGATTTTTCAATGAAAACGTACAAAAATATTTAATTTCAAACTACAAACTTTGAAAAGGCTTTTCTATTACAGAGGACCCTTCTATTTTCCCAACTTCCTCTCGAAGGGCCCTTCTATTAGAGGGGTCGTTCTATTGAAGGGCAATTCTAATGAAGGTTTTACTTTAAATAGATTATTTCAGGAGCACCTCAAAGCTACTCGTCCATCCATCACTCAGGAAGACTTGCACAAAGGGATCGAGAAAATGAAAAAAATTCAAATCGATGAAAAATAGATTACGGCTTTTTCCGAATCCCCTTCCTCTCCATTTTTAATCATGTTCGTCATAATAATGCCTTTTAATCCCCAACCCCTTTTCCCTTCTTTTTGAATATTCTTTTCCATCAATCCGATGTTCCTTTTTTTCCGGGTAAAATACTAYCATCGTGTAGTAGTTCCATCCAAATCCCCGTGCCATTTTCTTATTCTTTAACAATTCTTTTGGGTGATTCGATTCGACGATAAATTCCATTGCAAGAAGTTTATTGGTTTCAAATATATACAAGAAAATGAGATCATGAAAAAGTTTTAAGTAATATTGAATTCATGTGAAAAGAAAAAAGCAAAGATACTTTAAAACAAATTTGGAGAGAAGTTGAGGGTAAATGAAGAAGAAGAAAACTGAACAGTGTGAGAAGTTTAAAGAAGAAAATTCAGAATTTAGAAAATCTATTCTTGGAATTCAAGTTCATCAAGAACTCGATCAATATGCTCGACAGCAGACAATCCGAGACCTGCCCAAGTTTTGTCATCAAGTACTTTGACGTGAGATTGGAGAAGATCCATATCTGTTTGAGCACCTGTATCACGAAGAGAATCCACATTATCTTCGATGAAACGGAGGCGGTGACGGACGATCTCAGCTTCGCTTTTTCTAGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAAAAATAGATTACGGCTTTT</pcr_primer_p1>
		<pcr_primer_p2>AATGGAATTTATCGTCGAATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGAAAAATAGATTACGGCTTTTTCCGAATCCCCTTCCTCTCCATTTTTAATCATGTTCGTCATAATAATGCCTTTTAATCCCCAACCCCTTTTCCCTTCTTTTTGAATATTCTTTTCCATCAATCCGATGTTCCTTTTTTTCCGGGTAAAATACTACCATCGTGTAGTAGTTCCATCCAAATCCCCGTGCCATTTTCTTATTCTTTAACAATTCTTTTGGGTGATTCGATTCGACGATAAATTCCATT</canonical_amplicon>
		<polymorphic_amplicon>ATGAAAAATAGATTACGGCTTTTTCCGAATCCCCTTCCTCTCCATTTTTAATCATGTTCGTCATAATAATGCCTTTTAATCCCCAACCCCTTTTCCCTTCTTTTTGAATATTCTTTTCCATCAATCCGATGTTCCTTTTTTTCCGGGTAAAATACTAYCATCGTGTAGTAGTTCCATCCAAATCCCCGTGCCATTTTCTTATTCTTTAACAATTCTTTTGGGTGATTCGATTCGACGATAAATTCCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14799</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>684900</contig_pos>
        <strand>+</strand>
        <context>GCCATTTTCT[G/T]ATTCTTTAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATACTACCATCGTGTAGTAGTTCCATCCAAATCCCCGTGCCATTTTCT</left_flank>
        <right_flank>ATTCTTTAACAATTCTTTTGGGTGATTCGATTCGACGATAAATTCCATTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGCAAGTTTATGAGTAAATTTTCGAATTTTCGAAAGATTTTTCAATGAAAACGTACAAAAATATTTAATTTCAAACTACAAACTTTGAAAAGGCTTTTCTATTACAGAGGACCCTTCTATTTTCCCAACTTCCTCTCGAAGGGCCCTTCTATTAGAGGGGTCGTTCTATTGAAGGGCAATTCTAATGAAGGTTTTACTTTAAATAGATTATTTCAGGAGCACCTCAAAGCTACTCGTCCATCCATCACTCAGGAAGACTTGCACAAAGGGATCGAGAAAATGAAAAAAATTCAAATCGATGAAAAATAGATTACGGCTTTTTCCGAATCCCCTTCCTCTCCATTTTTAATCATGTTCGTCATAATAATGCCTTTTAATCCCCAACCCCTTTTCCCTTCTTTTTGAATATTCTTTTCCATCAATCCGATGTTCCTTTTTTTCCGGGTAAAATACTACCATCGTGTAGTAGTTCCATCCAAATCCCCGTGCCATTTTCTTATTCTTTAACAATTCTTTTGGGTGATTCGATTCGACGATAAATTCCATTGCAAGAAGTTTATTGGTTTCAAATATATACAAGAAAATGAGATCATGAAAAAGTTTTAAGTAATATTGAATTCATGTGAAAAGAAAAAAGCAAAGATACTTTAAAACAAATTTGGAGAGAAGTTGAGGGTAAATGAAGAAGAAGAAAACTGAACAGTGTGAGAAGTTTAAAGAAGAAAATTCAGAATTTAGAAAATCTATTCTTGGAATTCAAGTTCATCAAGAACTCGATCAATATGCTCGACAGCAGACAATCCGAGACCTGCCCAAGTTTTGTCATCAAGTACTTTGACGTGAGATTGGAGAAGATCCATATCTGTTTGAGCACCTGTATCACGAAGAGAATCCACATTATCTTCGATGAAACGGAGGCGGTGACGGACGATCTCAGCTTCGCTTTTTCTAGAAATCATTGTAATTATAATAGTTGGCTATTTTGCTAATTCCCAAGT</canonical>
            <polymorphic>TGAGCAAGTTTATGAGTAAATTTTCGAATTTTCGAAAGATTTTTCAATGAAAACGTACAAAAATATTTAATTTCAAACTACAAACTTTGAAAAGGCTTTTCTATTACAGAGGACCCTTCTATTTTCCCAACTTCCTCTCGAAGGGCCCTTCTATTAGAGGGGTCGTTCTATTGAAGGGCAATTCTAATGAAGGTTTTACTTTAAATAGATTATTTCAGGAGCACCTCAAAGCTACTCGTCCATCCATCACTCAGGAAGACTTGCACAAAGGGATCGAGAAAATGAAAAAAATTCAAATCGATGAAAAATAGATTACGGCTTTTTCCGAATCCCCTTCCTCTCCATTTTTAATCATGTTCGTCATAATAATGCCTTTTAATCCCCAACCCCTTTTCCCTTCTTTTTGAATATTCTTTTCCATCAATCCGATGTTCCTTTTTTTCCGGGTAAAATACTACCATCGTGTAGTAGTTCCATCCAAATCCCCGTGCCATTTTCTKATTCTTTAACAATTCTTTTGGGTGATTCGATTCGACGATAAATTCCATTGCAAGAAGTTTATTGGTTTCAAATATATACAAGAAAATGAGATCATGAAAAAGTTTTAAGTAATATTGAATTCATGTGAAAAGAAAAAAGCAAAGATACTTTAAAACAAATTTGGAGAGAAGTTGAGGGTAAATGAAGAAGAAGAAAACTGAACAGTGTGAGAAGTTTAAAGAAGAAAATTCAGAATTTAGAAAATCTATTCTTGGAATTCAAGTTCATCAAGAACTCGATCAATATGCTCGACAGCAGACAATCCGAGACCTGCCCAAGTTTTGTCATCAAGTACTTTGACGTGAGATTGGAGAAGATCCATATCTGTTTGAGCACCTGTATCACGAAGAGAATCCACATTATCTTCGATGAAACGGAGGCGGTGACGGACGATCTCAGCTTCGCTTTTTCTAGAAATCATTGTAATTATAATAGTTGGCTATTTTGCTAATTCCCAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTTTAATCATGTTCGTCATA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCATGATCTCATTTTCTTGT</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>CATTTTTAATCATGTTCGTCATAATAATGCCTTTTAATCCCCAACCCCTTTTCCCTTCTTTTTGAATATTCTTTTCCATCAATCCGATGTTCCTTTTTTTCCGGGTAAAATACTACCATCGTGTAGTAGTTCCATCCAAATCCCCGTGCCATTTTCTTATTCTTTAACAATTCTTTTGGGTGATTCGATTCGACGATAAATTCCATTGCAAGAAGTTTATTGGTTTCAAATATATACAAGAAAATGAGATCATGAAAA</canonical_amplicon>
		<polymorphic_amplicon>CATTTTTAATCATGTTCGTCATAATAATGCCTTTTAATCCCCAACCCCTTTTCCCTTCTTTTTGAATATTCTTTTCCATCAATCCGATGTTCCTTTTTTTCCGGGTAAAATACTACCATCGTGTAGTAGTTCCATCCAAATCCCCGTGCCATTTTCTKATTCTTTAACAATTCTTTTGGGTGATTCGATTCGACGATAAATTCCATTGCAAGAAGTTTATTGGTTTCAAATATATACAAGAAAATGAGATCATGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14800</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>685069</contig_pos>
        <strand>+</strand>
        <context>ATTTGGAGAG[A/G]AGTTGAGGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCATGTGAAAAGAAAAAAGCAAAGATACTTTAAAACAAATTTGGAGAG</left_flank>
        <right_flank>AGTTGAGGGTAAATGAAGAAGAAGAAAACTGAACAGTGTGAGAAGTTTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGAAGGGCAATTCTAATGAAGGTTTTACTTTAAATAGATTATTTCAGGAGCACCTCAAAGCTACTCGTCCATCCATCACTCAGGAAGACTTGCACAAAGGGATCGAGAAAATGAAAAAAATTCAAATCGATGAAAAATAGATTACGGCTTTTTCCGAATCCCCTTCCTCTCCATTTTTAATCATGTTCGTCATAATAATGCCTTTTAATCCCCAACCCCTTTTCCCTTCTTTTTGAATATTCTTTTCCATCAATCCGATGTTCCTTTTTTTCCGGGTAAAATACTACCATCGTGTAGTAGTTCCATCCAAATCCCCGTGCCATTTTCTTATTCTTTAACAATTCTTTTGGGTGATTCGATTCGACGATAAATTCCATTGCAAGAAGTTTATTGGTTTCAAATATATACAAGAAAATGAGATCATGAAAAAGTTTTAAGTAATATTGAATTCATGTGAAAAGAAAAAAGCAAAGATACTTTAAAACAAATTTGGAGAGAAGTTGAGGGTAAATGAAGAAGAAGAAAACTGAACAGTGTGAGAAGTTTAAAGAAGAAAATTCAGAATTTAGAAAATCTATTCTTGGAATTCAAGTTCATCAAGAACTCGATCAATATGCTCGACAGCAGACAATCCGAGACCTGCCCAAGTTTTGTCATCAAGTACTTTGACGTGAGATTGGAGAAGATCCATATCTGTTTGAGCACCTGTATCACGAAGAGAATCCACATTATCTTCGATGAAACGGAGGCGGTGACGGACGATCTCAGCTTCGCTTTTTCTAGAAATCATTGTAATTATAATAGTTGGCTATTTTGCTAATTCCCAAGTATCAAATGAACTCACATTGACTCAGCGACATCTCCGTTACTCGAATATCCAGAACTGAGCTCTCTTGGAGAAAATGCTCTTCTATCAGAAGTTTCGAATCCATTCGTGTTACTTGAATAACTTGTGACACCTCCTGGACTCATTGGACCACTTTGAAGAGAAGCGAATT</canonical>
            <polymorphic>ATTGAAGGGCAATTCTAATGAAGGTTTTACTTTAAATAGATTATTTCAGGAGCACCTCAAAGCTACTCGTCCATCCATCACTCAGGAAGACTTGCACAAAGGGATCGAGAAAATGAAAAAAATTCAAATCGATGAAAAATAGATTACGGCTTTTTCCGAATCCCCTTCCTCTCCATTTTTAATCATGTTCGTCATAATAATGCCTTTTAATCCCCAACCCCTTTTCCCTTCTTTTTGAATATTCTTTTCCATCAATCCGATGTTCCTTTTTTTCCGGGTAAAATACTACCATCGTGTAGTAGTTCCATCCAAATCCCCGTGCCATTTTCTTATTCTTTAACAATTCTTTTGGGTGATTCGATTCGACGATAAATTCCATTGCAAGAAGTTTATTGGTTTCAAATATATACAAGAAAATGAGATCATGAAAAAGTTTTAAGTAATATTGAATTCATGTGAAAAGAAAAAAGCAAAGATACTTTAAAACAAATTTGGAGAGRAGTTGAGGGTAAATGAAGAAGAAGAAAACTGAACAGTGTGAGAAGTTTAAAGAAGAAAATTCAGAATTTAGAAAATCTATTCTTGGAATTCAAGTTCATCAAGAACTCGATCAATATGCTCGACAGCAGACAATCCGAGACCTGCCCAAGTTTTGTCATCAAGTACTTTGACGTGAGATTGGAGAAGATCCATATCTGTTTGAGCACCTGTATCACGAAGAGAATCCACATTATCTTCGATGAAACGGAGGCGGTGACGGACGATCTCAGCTTCGCTTTTTCTAGAAATCATTGTAATTATAATAGTTGGCTATTTTGCTAATTCCCAAGTATCAAATGAACTCACATTGACTCAGCGACATCTCCGTTACTCGAATATCCAGAACTGAGCTCTCTTGGAGAAAATGCTCTTCTATCAGAAGTTTCGAATCCATTCGTGTTACTTGAATAACTTGTGACACCTCCTGGACTCATTGGACCACTTTGAAGAGAAGCGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGAATTCATGTGAAAAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATATGGATCTTCTCCAATCTCAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTGAATTCATGTGAAAAGAAAAAAGCAAAGATACTTTAAAACAAATTTGGAGAGAAGTTGAGGGTAAATGAAGAAGAAGAAAACTGAACAGTGTGAGAAGTTTAAAGAAGAAAATTCAGAATTTAGAAAATCTATTCTTGGAATTCAAGTTCATCAAGAACTCGATCAATATGCTCGACAGCAGACAATCCGAGACCTGCCCAAGTTTTGTCATCAAGTACTTTGACGTGAGATTGGAGAAGATCCATAT</canonical_amplicon>
		<polymorphic_amplicon>ATTGAATTCATGTGAAAAGAAAAAAGCAAAGATACTTTAAAACAAATTTGGAGAGRAGTTGAGGGTAAATGAAGAAGAAGAAAACTGAACAGTGTGAGAAGTTTAAAGAAGAAAATTCAGAATTTAGAAAATCTATTCTTGGAATTCAAGTTCATCAAGAACTCGATCAATATGCTCGACAGCAGACAATCCGAGACCTGCCCAAGTTTTGTCATCAAGTACTTTGACGTGAGATTGGAGAAGATCCATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14801</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>685103</contig_pos>
        <strand>+</strand>
        <context>GAAAACTGAA[A/C]AGTGTGAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAACAAATTTGGAGAGAAGTTGAGGGTAAATGAAGAAGAAGAAAACTGAA</left_flank>
        <right_flank>AGTGTGAGAAGTTTAAAGAAGAAAATTCAGAATTTAGAAAATCTATTCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAGATTATTTCAGGAGCACCTCAAAGCTACTCGTCCATCCATCACTCAGGAAGACTTGCACAAAGGGATCGAGAAAATGAAAAAAATTCAAATCGATGAAAAATAGATTACGGCTTTTTCCGAATCCCCTTCCTCTCCATTTTTAATCATGTTCGTCATAATAATGCCTTTTAATCCCCAACCCCTTTTCCCTTCTTTTTGAATATTCTTTTCCATCAATCCGATGTTCCTTTTTTTCCGGGTAAAATACTACCATCGTGTAGTAGTTCCATCCAAATCCCCGTGCCATTTTCTTATTCTTTAACAATTCTTTTGGGTGATTCGATTCGACGATAAATTCCATTGCAAGAAGTTTATTGGTTTCAAATATATACAAGAAAATGAGATCATGAAAAAGTTTTAAGTAATATTGAATTCATGTGAAAAGAAAAAAGCAAAGATACTTTAAAACAAATTTGGAGAGAAGTTGAGGGTAAATGAAGAAGAAGAAAACTGAACAGTGTGAGAAGTTTAAAGAAGAAAATTCAGAATTTAGAAAATCTATTCTTGGAATTCAAGTTCATCAAGAACTCGATCAATATGCTCGACAGCAGACAATCCGAGACCTGCCCAAGTTTTGTCATCAAGTACTTTGACGTGAGATTGGAGAAGATCCATATCTGTTTGAGCACCTGTATCACGAAGAGAATCCACATTATCTTCGATGAAACGGAGGCGGTGACGGACGATCTCAGCTTCGCTTTTTCTAGAAATCATTGTAATTATAATAGTTGGCTATTTTGCTAATTCCCAAGTATCAAATGAACTCACATTGACTCAGCGACATCTCCGTTACTCGAATATCCAGAACTGAGCTCTCTTGGAGAAAATGCTCTTCTATCAGAAGTTTCGAATCCATTCGTGTTACTTGAATAACTTGTGACACCTCCTGGACTCATTGGACCACTTTGAAGAGAAGCGAATTGAGATAAATCATGCATTGATTGAGCCTTCTTTTT</canonical>
            <polymorphic>AATAGATTATTTCAGGAGCACCTCAAAGCTACTCGTCCATCCATCACTCAGGAAGACTTGCACAAAGGGATCGAGAAAATGAAAAAAATTCAAATCGATGAAAAATAGATTACGGCTTTTTCCGAATCCCCTTCCTCTCCATTTTTAATCATGTTCGTCATAATAATGCCTTTTAATCCCCAACCCCTTTTCCCTTCTTTTTGAATATTCTTTTCCATCAATCCGATGTTCCTTTTTTTCCGGGTAAAATACTACCATCGTGTAGTAGTTCCATCCAAATCCCCGTGCCATTTTCTTATTCTTTAACAATTCTTTTGGGTGATTCGATTCGACGATAAATTCCATTGCAAGAAGTTTATTGGTTTCAAATATATACAAGAAAATGAGATCATGAAAAAGTTTTAAGTAATATTGAATTCATGTGAAAAGAAAAAAGCAAAGATACTTTAAAACAAATTTGGAGAGAAGTTGAGGGTAAATGAAGAAGAAGAAAACTGAAMAGTGTGAGAAGTTTAAAGAAGAAAATTCAGAATTTAGAAAATCTATTCTTGGAATTCAAGTTCATCAAGAACTCGATCAATATGCTCGACAGCAGACAATCCGAGACCTGCCCAAGTTTTGTCATCAAGTACTTTGACGTGAGATTGGAGAAGATCCATATCTGTTTGAGCACCTGTATCACGAAGAGAATCCACATTATCTTCGATGAAACGGAGGCGGTGACGGACGATCTCAGCTTCGCTTTTTCTAGAAATCATTGTAATTATAATAGTTGGCTATTTTGCTAATTCCCAAGTATCAAATGAACTCACATTGACTCAGCGACATCTCCGTTACTCGAATATCCAGAACTGAGCTCTCTTGGAGAAAATGCTCTTCTATCAGAAGTTTCGAATCCATTCGTGTTACTTGAATAACTTGTGACACCTCCTGGACTCATTGGACCACTTTGAAGAGAAGCGAATTGAGATAAATCATGCATTGATTGAGCCTTCTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGAATTCATGTGAAAAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATATGGATCTTCTCCAATCTCAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTGAATTCATGTGAAAAGAAAAAAGCAAAGATACTTTAAAACAAATTTGGAGAGAAGTTGAGGGTAAATGAAGAAGAAGAAAACTGAACAGTGTGAGAAGTTTAAAGAAGAAAATTCAGAATTTAGAAAATCTATTCTTGGAATTCAAGTTCATCAAGAACTCGATCAATATGCTCGACAGCAGACAATCCGAGACCTGCCCAAGTTTTGTCATCAAGTACTTTGACGTGAGATTGGAGAAGATCCATAT</canonical_amplicon>
		<polymorphic_amplicon>ATTGAATTCATGTGAAAAGAAAAAAGCAAAGATACTTTAAAACAAATTTGGAGAGAAGTTGAGGGTAAATGAAGAAGAAGAAAACTGAAMAGTGTGAGAAGTTTAAAGAAGAAAATTCAGAATTTAGAAAATCTATTCTTGGAATTCAAGTTCATCAAGAACTCGATCAATATGCTCGACAGCAGACAATCCGAGACCTGCCCAAGTTTTGTCATCAAGTACTTTGACGTGAGATTGGAGAAGATCCATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14802</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>685301</contig_pos>
        <strand>+</strand>
        <context>GAATCCACAT[C/T]ATCTTCGATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGAAGATCCATATCTGTTTGAGCACCTGTATCACGAAGAGAATCCACAT</left_flank>
        <right_flank>ATCTTCGATGAAACGGAGGCGGTGACGGACGATCTCAGCTTCGCTTTTTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGAATATTCTTTTCCATCAATCCGATGTTCCTTTTTTTCCGGGTAAAATACTACCATCGTGTAGTAGTTCCATCCAAATCCCCGTGCCATTTTCTTATTCTTTAACAATTCTTTTGGGTGATTCGATTCGACGATAAATTCCATTGCAAGAAGTTTATTGGTTTCAAATATATACAAGAAAATGAGATCATGAAAAAGTTTTAAGTAATATTGAATTCATGTGAAAAGAAAAAAGCAAAGATACTTTAAAACAAATTTGGAGAGAAGTTGAGGGTAAATGAAGAAGAAGAAAACTGAACAGTGTGAGAAGTTTAAAGAAGAAAATTCAGAATTTAGAAAATCTATTCTTGGAATTCAAGTTCATCAAGAACTCGATCAATATGCTCGACAGCAGACAATCCGAGACCTGCCCAAGTTTTGTCATCAAGTACTTTGACGTGAGATTGGAGAAGATCCATATCTGTTTGAGCACCTGTATCACGAAGAGAATCCACATTATCTTCGATGAAACGGAGGCGGTGACGGACGATCTCAGCTTCGCTTTTTCTAGAAATCATTGTAATTATAATAGTTGGCTATTTTGCTAATTCCCAAGTATCAAATGAACTCACATTGACTCAGCGACATCTCCGTTACTCGAATATCCAGAACTGAGCTCTCTTGGAGAAAATGCTCTTCTATCAGAAGTTTCGAATCCATTCGTGTTACTTGAATAACTTGTGACACCTCCTGGACTCATTGGACCACTTTGAAGAGAAGCGAATTGAGATAAATCATGCATTGATTGAGCCTTCTTTTTCGATTTGCTCTTTCTCTTCTTTCCTTGATAAGCAGCAACGAGTCTCTCCATTTCTCTGTGATGACGGAGAGCTGCAATCGATTGAGGGGAGTGTCCATTGGAATTGATCAGGGCAGGATCTGCTCCGTTTTCCAGCTGAAATTCTAGTTTTAGATATTTATGTAGAGGGAAACGCTACCATATAAAGTGCAGCATCCA</canonical>
            <polymorphic>TTTTGAATATTCTTTTCCATCAATCCGATGTTCCTTTTTTTCCGGGTAAAATACTACCATCGTGTAGTAGTTCCATCCAAATCCCCGTGCCATTTTCTTATTCTTTAACAATTCTTTTGGGTGATTCGATTCGACGATAAATTCCATTGCAAGAAGTTTATTGGTTTCAAATATATACAAGAAAATGAGATCATGAAAAAGTTTTAAGTAATATTGAATTCATGTGAAAAGAAAAAAGCAAAGATACTTTAAAACAAATTTGGAGAGAAGTTGAGGGTAAATGAAGAAGAAGAAAACTGAACAGTGTGAGAAGTTTAAAGAAGAAAATTCAGAATTTAGAAAATCTATTCTTGGAATTCAAGTTCATCAAGAACTCGATCAATATGCTCGACAGCAGACAATCCGAGACCTGCCCAAGTTTTGTCATCAAGTACTTTGACGTGAGATTGGAGAAGATCCATATCTGTTTGAGCACCTGTATCACGAAGAGAATCCACATYATCTTCGATGAAACGGAGGCGGTGACGGACGATCTCAGCTTCGCTTTTTCTAGAAATCATTGTAATTATAATAGTTGGCTATTTTGCTAATTCCCAAGTATCAAATGAACTCACATTGACTCAGCGACATCTCCGTTACTCGAATATCCAGAACTGAGCTCTCTTGGAGAAAATGCTCTTCTATCAGAAGTTTCGAATCCATTCGTGTTACTTGAATAACTTGTGACACCTCCTGGACTCATTGGACCACTTTGAAGAGAAGCGAATTGAGATAAATCATGCATTGATTGAGCCTTCTTTTTCGATTTGCTCTTTCTCTTCTTTCCTTGATAAGCAGCAACGAGTCTCTCCATTTCTCTGTGATGACGGAGAGCTGCAATCGATTGAGGGGAGTGTCCATTGGAATTGATCAGGGCAGGATCTGCTCCGTTTTCCAGCTGAAATTCTAGTTTTAGATATTTATGTAGAGGGAAACGCTACCATATAAAGTGCAGCATCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGGAGAAGATCCATATCTGTT</pcr_primer_p1>
		<pcr_primer_p2>GAAACTTCTGATAGAAGAGCATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTGGAGAAGATCCATATCTGTTTGAGCACCTGTATCACGAAGAGAATCCACATTATCTTCGATGAAACGGAGGCGGTGACGGACGATCTCAGCTTCGCTTTTTCTAGAAATCATTGTAATTATAATAGTTGGCTATTTTGCTAATTCCCAAGTATCAAATGAACTCACATTGACTCAGCGACATCTCCGTTACTCGAATATCCAGAACTGAGCTCTCTTGGAGAAAATGCTCTTCTATCAGAAGTTTC</canonical_amplicon>
		<polymorphic_amplicon>ATTGGAGAAGATCCATATCTGTTTGAGCACCTGTATCACGAAGAGAATCCACATYATCTTCGATGAAACGGAGGCGGTGACGGACGATCTCAGCTTCGCTTTTTCTAGAAATCATTGTAATTATAATAGTTGGCTATTTTGCTAATTCCCAAGTATCAAATGAACTCACATTGACTCAGCGACATCTCCGTTACTCGAATATCCAGAACTGAGCTCTCTTGGAGAAAATGCTCTTCTATCAGAAGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14803</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>763404</contig_pos>
        <strand>+</strand>
        <context>AATCTAAACT[A/T]TAGAGTCATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTTTCTGCCACTTTGCATGGGGGGATTCTGATAGTTTAGAATCTAAACT</left_flank>
        <right_flank>TAGAGTCATATATTTTCCAGATGAAATATATTTCGATAAAGGGAAAAAAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAGAAATATTCCAAAATGTAGCTGAAAACTAGGACACATTAGTTTAAACTAGGCCACACCAATACAAATAAAAGGTTCAATATCTAAACAGCAATTTCGTATTTAACTGAATTACTCAATTCAGGTTACTCAAATTTCTTTCATTTCAAATCAGTCTCAAAAGAGAAATCCTATGAGCATGTCAATTCTCGTCAATGTTCAGTCGCAAAAGAGCAACCTAGAGGAAATATGCAATGCGGAGCCAAAGGTAATCGTGTCGGGGAGAGAATCATAACGAAAAGTGGATGAATTGCGTCAATGAAATCAACTGAATTCTCCCTTGTGAGTCACAAGGAAATGCGGAGAAAGTTTATTGGCTTTTGGAGCATGTTGGAGCAATGGAAGTGACAGGGAAAGTGAACTGGAAATGACAGAGTGCATGAGGAAAGTTTTGAATAGATTCGAGAATGTTTCTGCCACTTTGCATGGGGGGATTCTGATAGTTTAGAATCTAAACTATAGAGTCATATATTTTCCAGATGAAATATATTTCGATAAAGGGAAAAAACTAAACATTGAATAGGTTGAATAGTTTAGTTTCAGGATTGTTTGAGAATTCAACAAATCCTTGAATTTGGAAAGTCACAAATTCAGATATCCAAACATCTGGAAGTTAAGAAATTCGAAACTAGAGAAATTCAGGAATTCGAAAATTCTGGATTTCAGGACGTCAAAAATTTAGTAATTTAGAATTAAAAATTTTGCGAAAATTCGAATTTTCAGAAATGTTGGATATTCGGAAGTGAGAAACTCTGAAAGAAGAAACTCAAACTCAAGATACAGTAAGCGACAGCCAGGAGGTCGAGCCCCCAAATGAAAAGTGCACCTCTCAACAACGCGAAATTATGTAGCTGAAACAGTCAACCAAACTCAGGATCCTACCCAAAAAATCGAGGTGGAACAATAACTACGTAGTGTATATTCTTAGAACAGCAAATTAAGATTTTAAGAAGCTCACA</canonical>
            <polymorphic>AAGAGAAATATTCCAAAATGTAGCTGAAAACTAGGACACATTAGTTTAAACTAGGCCACACCAATACAAATAAAAGGTTCAATATCTAAACAGCAATTTCGTATTTAACTGAATTACTCAATTCAGGTTACTCAAATTTCTTTCATTTCAAATCAGTCTCAAAAGAGAAATCCTATGAGCATGTCAATTCTCGTCAATGTTCAGTCGCAAAAGAGCAACCTAGAGGAAATATGCAATGCGGAGCCAAAGGTAATCGTGTCGGGGAGAGAATCATAACGAAAAGTGGATGAATTGCGTCAATGAAATCAACTGAATTCTCCCTTGTGAGTCACAAGGAAATGCGGAGAAAGTTTATTGGCTTTTGGAGCATGTTGGAGCAATGGAAGTGACAGGGAAAGTGAACTGGAAATGACAGAGTGCATGAGGAAAGTTTTGAATAGATTCGAGAATGTTTCTGCCACTTTGCATGGGGGGATTCTGATAGTTTAGAATCTAAACTWTAGAGTCATATATTTTCCAGATGAAATATATTTCGATAAAGGGAAAAAACTAAACATTGAATAGGTTGAATAGTTTAGTTTCAGGATTGTTTGAGAATTCAACAAATCCTTGAATTTGGAAAGTCACAAATTCAGATATCCAAACATCTGGAAGTTAAGAAATTCGAAACTAGAGAAATTCAGGAATTCGAAAATTCTGGATTTCAGGACGTCAAAAATTTAGTAATTTAGAATTAAAAATTTTGCGAAAATTCGAATTTTCAGAAATGTTGGATATTCGGAAGTGAGAAACTCTGAAAGAAGAAACTCAAACTCAAGATACAGTAAGCGACAGCCAGGAGGTCGAGCCCCCAAATGAAAAGTGCACCTCTCAACAACGCGAAATTATGTAGCTGAAACAGTCAACCAAACTCAGGATCCTACCCAAAAAATCGAGGTGGAACAATAACTACGTAGTGTATATTCTTAGAACAGCAAATTAAGATTTTAAGAAGCTCACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTGAACTGGAAATGACAGAGT</pcr_primer_p1>
		<pcr_primer_p2>GTTTGGATATCTGAATTTGTGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGTGAACTGGAAATGACAGAGTGCATGAGGAAAGTTTTGAATAGATTCGAGAATGTTTCTGCCACTTTGCATGGGGGGATTCTGATAGTTTAGAATCTAAACTATAGAGTCATATATTTTCCAGATGAAATATATTTCGATAAAGGGAAAAAACTAAACATTGAATAGGTTGAATAGTTTAGTTTCAGGATTGTTTGAGAATTCAACAAATCCTTGAATTTGGAAAGTCACAAATTCAGATATCCAAAC</canonical_amplicon>
		<polymorphic_amplicon>AGTGAACTGGAAATGACAGAGTGCATGAGGAAAGTTTTGAATAGATTCGAGAATGTTTCTGCCACTTTGCATGGGGGGATTCTGATAGTTTAGAATCTAAACTWTAGAGTCATATATTTTCCAGATGAAATATATTTCGATAAAGGGAAAAAACTAAACATTGAATAGGTTGAATAGTTTAGTTTCAGGATTGTTTGAGAATTCAACAAATCCTTGAATTTGGAAAGTCACAAATTCAGATATCCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14804</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>763928</contig_pos>
        <strand>+</strand>
        <context>AAATTCAATT[C/T]AAATCGCCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCAAATTAAGATTTTAAGAAGCTCACAAGCTCCGCCTTAAAAATTCAATT</left_flank>
        <right_flank>AAATCGCCTGTGTGAAAATAACATATTCCTTCTAGTTTTAAGTTTTCTCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATATATTTCGATAAAGGGAAAAAACTAAACATTGAATAGGTTGAATAGTTTAGTTTCAGGATTGTTTGAGAATTCAACAAATCCTTGAATTTGGAAAGTCACAAATTCAGATATCCAAACATCTGGAAGTTAAGAAATTCGAAACTAGAGAAATTCAGGAATTCGAAAATTCTGGATTTCAGGACGTCAAAAATTTAGTAATTTAGAATTAAAAATTTTGCGAAAATTCGAATTTTCAGAAATGTTGGATATTCGGAAGTGAGAAACTCTGAAAGAAGAAACTCAAACTCAAGATACAGTAAGCGACAGCCAGGAGGTCGAGCCCCCAAATGAAAAGTGCACCTCTCAACAACGCGAAATTATGTAGCTGAAACAGTCAACCAAACTCAGGATCCTACCCAAAAAATCGAGGTGGAACAATAACTACGTAGTGTATATTCTTAGAACAGCAAATTAAGATTTTAAGAAGCTCACAAGCTCCGCCTTAAAAATTCAATTTAAATCGCCTGTGTGAAAATAACATATTCCTTCTAGTTTTAAGTTTTCTCATAAATGAAAAAAGGAATAACAAAAGAGAAGAAGAATATGTTCATGCGGTGAGCAATATGATCAACTTCTTCCTGTCTTTTGTCATTGTCGTCCACCAGTTTGTGACAAATGATTTGTACCTTTTTGGGGGGGGGGGGGGGGGGGGTTTCTCTATTTCCTAGAATATTCTCAATACGCTAGAAGAATGTGACTGAATGAACAAAGAAAAAGATTGTTTGTCTGTTCTATATTAATGAAATAATTAATCCAAAGATCTGTATATTCCAGAAATTCCGAATGAATCATTCAGAATGTTAGCTCAAGAAGAAAAGAAAAATGATGTATCGGAATGAATGAATGTTGCAAAATGAAATAGTTTCAATAAGTGTGCACCACTTGGATAGAAGACGTCATGAGGAATAAGAGAATGAAGAAGGCGTTGAATATGTAGAACTCAACAAAAGAAGAAAG</canonical>
            <polymorphic>AATATATTTCGATAAAGGGAAAAAACTAAACATTGAATAGGTTGAATAGTTTAGTTTCAGGATTGTTTGAGAATTCAACAAATCCTTGAATTTGGAAAGTCACAAATTCAGATATCCAAACATCTGGAAGTTAAGAAATTCGAAACTAGAGAAATTCAGGAATTCGAAAATTCTGGATTTCAGGACGTCAAAAATTTAGTAATTTAGAATTAAAAATTTTGCGAAAATTCGAATTTTCAGAAATGTTGGATATTCGGAAGTGAGAAACTCTGAAAGAAGAAACTCAAACTCAAGATACAGTAAGCGACAGCCAGGAGGTCGAGCCCCCAAATGAAAAGTGCACCTCTCAACAACGCGAAATTATGTAGCTGAAACAGTCAACCAAACTCAGGATCCTACCCAAAAAATCGAGGTGGAACAATAACTACGTAGTGTATATTCTTAGAACAGCAAATTAAGATTTTAAGAAGCTCACAAGCTCCGCCTTAAAAATTCAATTYAAATCGCCTGTGTGAAAATAACATATTCCTTCTAGTTTTAAGTTTTCTCATAAATGAAAAAAGGAATAACAAAAGAGAAGAAGAATATGTTCATGCGGTGAGCAATATGATCAACTTCTTCCTGTCTTTTGTCATTGTCGTCCACCAGTTTGTGACAAATGATTTGTACCTTTTTGGGGGGGGGGGGGGGGGGGGTTTCTCTATTTCCTAGAATATTCTCAATACGCTAGAAGAATGTGACTGAATGAACAAAGAAAAAGATTGTTTGTCTGTTCTATATTAATGAAATAATTAATCCAAAGATCTGTATATTCCAGAAATTCCGAATGAATCATTCAGAATGTTAGCTCAAGAAGAAAAGAAAAATGATGTATCGGAATGAATGAATGTTGCAAAATGAAATAGTTTCAATAAGTGTGCACCACTTGGATAGAAGACGTCATGAGGAATAAGAGAATGAAGAAGGCGTTGAATATGTAGAACTCAACAAAAGAAGAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>245 242 208 131 79 39 23 13 12 8</canonical_bands>
                <polymorphic_bands>245 242 208 131 79 52 23 12 8</polymorphic_bands>
            </assay>
            <assay>
                <site>ATTTAAAT</site>
                <isoschizomers>
                    <enzyme>SmiI</enzyme>
                    <enzyme>SwaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAAATTATGTAGCTGAAACAGT</pcr_primer_p1>
		<pcr_primer_p2>GCATGAACATATTCTTCTTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CGAAATTATGTAGCTGAAACAGTCAACCAAACTCAGGATCCTACCCAAAAAATCGAGGTGGAACAATAACTACGTAGTGTATATTCTTAGAACAGCAAATTAAGATTTTAAGAAGCTCACAAGCTCCGCCTTAAAAATTCAATTTAAATCGCCTGTGTGAAAATAACATATTCCTTCTAGTTTTAAGTTTTCTCATAAATGAAAAAAGGAATAACAAAAGAGAAGAAGAATATGTTCATGC</canonical_amplicon>
		<polymorphic_amplicon>CGAAATTATGTAGCTGAAACAGTCAACCAAACTCAGGATCCTACCCAAAAAATCGAGGTGGAACAATAACTACGTAGTGTATATTCTTAGAACAGCAAATTAAGATTTTAAGAAGCTCACAAGCTCCGCCTTAAAAATTCAATTYAAATCGCCTGTGTGAAAATAACATATTCCTTCTAGTTTTAAGTTTTCTCATAAATGAAAAAAGGAATAACAAAAGAGAAGAAGAATATGTTCATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14805</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>763756</contig_pos>
        <strand></strand>
        <context>gtcgagcccc[C/G]AAATGAAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGAAACTCAAACTCAAGATACAGTAAGCGACAGCCAGGAGGTCGAGCCCC</left_flank>
        <right_flank>AAATGAAAAGTGCACCTCTCAACAACGCGAAATTATGTAGCTGAAACAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTGGCTTTTGGAGCATGTTGGAGCAATGGAAGTGACAGGGAAAGTGAACTGGAAATGACAGAGTGCATGAGGAAAGTTTTGAATAGATTCGAGAATGTTTCTGCCACTTTGCATGGGGGGATTCTGATAGTTTAGAATCTAAACTATAGAGTCATATATTTTCCAGATGAAATATATTTCGATAAAGGGAAAAAACTAAACATTGAATAGGTTGAATAGTTTAGTTTCAGGATTGTTTGAGAATTCAACAAATCCTTGAATTTGGAAAGTCACAAATTCAGATATCCAAACATCTGGAAGTTAAGAAATTCGAAACTAGAGAAATTCAGGAATTCGAAAATTCTGGATTTCAGGACGTCAAAAATTTAGTAATTTAGAATTAAAAATTTTGCGAAAATTCGAATTTTCAGAAATGTTGGATATTCGGAAGTGAGAAACTCTGAAAGAAGAAACTCAAACTCAAGATACAGTAAGCGACAGCCAGGAGGTCGAGCCCCCAAATGAAAAGTGCACCTCTCAACAACGCGAAATTATGTAGCTGAAACAGTCAACCAAACTCAGGATCCTACCCAAAAAATCGAGGTGGAACAATAACTACGTAGTGTATATTCTTAGAACAGCAAATTAAGATTTTAAGAAGCTCACAAGCTCCGCCTTAAAAATTCAATTTAAATCGCCTGTGTGAAAATAACATATTCCTTCTAGTTTTAAGTTTTCTCATAAATGAAAAAAGGAATAACAAAAGAGAAGAAGAATATGTTCATGCGGTGAGCAATATGATCAACTTCTTCCTGTCTTTTGTCATTGTCGTCCACCAGTTTGTGACAAATGATTTGTACCTTTTTGGGGGGGGGGGGGGGGGGGGTTTCTCTATTTCCTAGAATATTCTCAATACGCTAGAAGAATGTGACTGAATGAACAAAGAAAAAGATTGTTTGTCTGTTCTATATTAATGAAATAATTAATCCAAAGATCTGTATATTCCAGAAATTCCGAAT</canonical>
            <polymorphic>TATTGGCTTTTGGAGCATGTTGGAGCAATGGAAGTGACAGGGAAAGTGAACTGGAAATGACAGAGTGCATGAGGAAAGTTTTGAATAGATTCGAGAATGTTTCTGCCACTTTGCATGGGGGGATTCTGATAGTTTAGAATCTAAACTATAGAGTCATATATTTTCCAGATGAAATATATTTCGATAAAGGGAAAAAACTAAACATTGAATAGGTTGAATAGTTTAGTTTCAGGATTGTTTGAGAATTCAACAAATCCTTGAATTTGGAAAGTCACAAATTCAGATATCCAAACATCTGGAAGTTAAGAAATTCGAAACTAGAGAAATTCAGGAATTCGAAAATTCTGGATTTCAGGACGTCAAAAATTTAGTAATTTAGAATTAAAAATTTTGCGAAAATTCGAATTTTCAGAAATGTTGGATATTCGGAAGTGAGAAACTCTGAAAGAAGAAACTCAAACTCAAGATACAGTAAGCGACAGCCAGGAGGTCGAGCCCCSAAATGAAAAGTGCACCTCTCAACAACGCGAAATTATGTAGCTGAAACAGTCAACCAAACTCAGGATCCTACCCAAAAAATCGAGGTGGAACAATAACTACGTAGTGTATATTCTTAGAACAGCAAATTAAGATTTTAAGAAGCTCACAAGCTCCGCCTTAAAAATTCAATTTAAATCGCCTGTGTGAAAATAACATATTCCTTCTAGTTTTAAGTTTTCTCATAAATGAAAAAAGGAATAACAAAAGAGAAGAAGAATATGTTCATGCGGTGAGCAATATGATCAACTTCTTCCTGTCTTTTGTCATTGTCGTCCACCAGTTTGTGACAAATGATTTGTACCTTTTTGGGGGGGGGGGGGGGGGGGGTTTCTCTATTTCCTAGAATATTCTCAATACGCTAGAAGAATGTGACTGAATGAACAAAGAAAAAGATTGTTTGTCTGTTCTATATTAATGAAATAATTAATCCAAAGATCTGTATATTCCAGAAATTCCGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGACGTCAAAAATTTAGTAAT</pcr_primer_p1>
		<pcr_primer_p2>CTACGTAGTTATTGTTCCACCTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAGGACGTCAAAAATTTAGTAATTTAGAATTAAAAATTTTGCGAAAATTCGAATTTTCAGAAATGTTGGATATTCGGAAGTGAGAAACTCTGAAAGAAGAAACTCAAACTCAAGATACAGTAAGCGACAGCCAGGAGGTCGAGCCCCCAAATGAAAAGTGCACCTCTCAACAACGCGAAATTATGTAGCTGAAACAGTCAACCAAACTCAGGATCCTACCCAAAAAATCGAGGTGGAACAATAACTACGTAG</canonical_amplicon>
		<polymorphic_amplicon>CAGGACGTCAAAAATTTAGTAATTTAGAATTAAAAATTTTGCGAAAATTCGAATTTTCAGAAATGTTGGATATTCGGAAGTGAGAAACTCTGAAAGAAGAAACTCAAACTCAAGATACAGTAAGCGACAGCCAGGAGGTCGAGCCCCSAAATGAAAAGTGCACCTCTCAACAACGCGAAATTATGTAGCTGAAACAGTCAACCAAACTCAGGATCCTACCCAAAAAATCGAGGTGGAACAATAACTACGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14806</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>892081</contig_pos>
        <strand>+</strand>
        <context>ATGTTCACTT[A/T]CAGAAAATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACAGAAAAAGAAATTGTCAAGGTAACCAATTTGATTTCAAATGTTCACTT</left_flank>
        <right_flank>CAGAAAATTGATAAACTTTCAGATCTGCACTTGTCCAGAAGGATTCAGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATATTTTCACAGAAATTGCATCCATTTCAGGTAAAAAAACAAAATTTCAAAATCCAAAAAAAAATGATTGTCCGATCTGTGAGGATTTTCGTTACAATTGCCTTTTTGGAAATGATCAGCTCTTCAGAAGTAAAATCGAATAATTTTGGTTGGTTCAAGATAGTTCAATTTTCCCTAATTTTATGAAAATTGATAAAGAGTTTTCAGATCCAGATGATTGCTACGAGCCAGGAACGAATTTCAAAGAGAACGAGAAGAATTTAGGTTACTGTCCATGTAAATATGGATACGGAGGACCTACATGTTTTGAGATTTTTGATTGCGTAAGTGGACATTTGAGAATGGAAAAGTGAGAAATAATAATTGAATCTCTTATTAGTTATCTTTTTTCAGTTGTTCGAGAGAAATTCATCACGAATATGATCTTCAATGGAGATGTGCAGCCACAGAAAAAGAAATTGTCAAGGTAACCAATTTGATTTCAAATGTTCACTTACAGAAAATTGATAAACTTTCAGATCTGCACTTGTCCAGAAGGATTCAGAGGAGAAACATGTGAATTCATTTTGGAAAACACGTTATCTACATACTGGCAAACTGTTGGACAGTCTCAAAAGTTTTTCGAAGTGATTTATAACAAATCAGATTCATGCATGAGAATAATTGGAACGAAAATTTTGAGATCAGTGAGTTGAAATTTATGGGGCTACCCACTTGTTTATATACATGCGATTCAGGTGGGGTGACACTGAAATGTTATGAAATGACCAACAAATTGGAATTTCAGGTGCTTGAGTATCGTCGACTGATCATGGTTGTGACATTTATAGCGATTTTGGGCCTTGCTTGGAGACACACCCAGAGACAAAGAAGACGAATGACACATAGTGTGAATTGCCAGTCGGCGAGAAGCCGAGTTTTGAACTTGGACAATTTTAAAAATCCAAATTTCTATCATCTCGTGGATTCGAGAAGTCTGGAAGAAGCAGACGGAGA</canonical>
            <polymorphic>AAAAATATTTTCACAGAAATTGCATCCATTTCAGGTAAAAAAACAAAATTTCAAAATCCAAAAAAAAATGATTGTCCGATCTGTGAGGATTTTCGTTACAATTGCCTTTTTGGAAATGATCAGCTCTTCAGAAGTAAAATCGAATAATTTTGGTTGGTTCAAGATAGTTCAATTTTCCCTAATTTTATGAAAATTGATAAAGAGTTTTCAGATCCAGATGATTGCTACGAGCCAGGAACGAATTTCAAAGAGAACGAGAAGAATTTAGGTTACTGTCCATGTAAATATGGATACGGAGGACCTACATGTTTTGAGATTTTTGATTGCGTAAGTGGACATTTGAGAATGGAAAAGTGAGAAATAATAATTGAATCTCTTATTAGTTATCTTTTTTCAGTTGTTCGAGAGAAATTCATCACGAATATGATCTTCAATGGAGATGTGCAGCCACAGAAAAAGAAATTGTCAAGGTAACCAATTTGATTTCAAATGTTCACTTWCAGAAAATTGATAAACTTTCAGATCTGCACTTGTCCAGAAGGATTCAGAGGAGAAACATGTGAATTCATTTTGGAAAACACGTTATCTACATACTGGCAAACTGTTGGACAGTCTCAAAAGTTTTTCGAAGTGATTTATAACAAATCAGATTCATGCATGAGAATAATTGGAACGAAAATTTTGAGATCAGTGAGTTGAAATTTATGGGGCTACCCACTTGTTTATATACATGCGATTCAGGTGGGGTGACACTGAAATGTTATGAAATGACCAACAAATTGGAATTTCAGGTGCTTGAGTATCGTCGACTGATCATGGTTGTGACATTTATAGCGATTTTGGGCCTTGCTTGGAGACACACCCAGAGACAAAGAAGACGAATGACACATAGTGTGAATTGCCAGTCGGCGAGAAGCCGAGTTTTGAACTTGGACAATTTTAAAAATCCAAATTTCTATCATCTCGTGGATTCGAGAAGTCTGGAAGAAGCAGACGGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGAATGGAAAAGTGAGAAATA</pcr_primer_p1>
		<pcr_primer_p2>TAGATAACGTGTTTTCCAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAGAATGGAAAAGTGAGAAATAATAATTGAATCTCTTATTAGTTATCTTTTTTCAGTTGTTCGAGAGAAATTCATCACGAATATGATCTTCAATGGAGATGTGCAGCCACAGAAAAAGAAATTGTCAAGGTAACCAATTTGATTTCAAATGTTCACTTACAGAAAATTGATAAACTTTCAGATCTGCACTTGTCCAGAAGGATTCAGAGGAGAAACATGTGAATTCATTTTGGAAAACACGTTATCTA</canonical_amplicon>
		<polymorphic_amplicon>TGAGAATGGAAAAGTGAGAAATAATAATTGAATCTCTTATTAGTTATCTTTTTTCAGTTGTTCGAGAGAAATTCATCACGAATATGATCTTCAATGGAGATGTGCAGCCACAGAAAAAGAAATTGTCAAGGTAACCAATTTGATTTCAAATGTTCACTTWCAGAAAATTGATAAACTTTCAGATCTGCACTTGTCCAGAAGGATTCAGAGGAGAAACATGTGAATTCATTTTGGAAAACACGTTATCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14824</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>17257</contig_pos>
        <strand></strand>
        <context>GTTATTGAAA[C/T]ATCTTGATAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGTGGCTTCCAGTAATGAAATTCATGCCGCATACAAAAGTTATTGAAA</left_flank>
        <right_flank>ATCTTGATATCGGTTTCAAATTAACCCTCCCCCACAAATAAAAAAATGTT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCCGAATGTTTAATTCGTTGTTCTCAGTTTGAAGATAATGAACTTTTCACTGTTATACGATGCCCAATGATCACAAAAAGATAGAAAACGTAGGAGAAGAAGAAAGGGAGTGTGAGTGGCAGTGTAAGAATTGGAACCAAGTGTAATTGACGCTGGTCACCCATTCTTGGGATGTTGCCAAGTTGTTGGTCGTTCAAAGTTGTAATAGCAATGACTTTTAGAAAAGCTAATAGCTCGTTGTGTATTGAAAAACAAATGGGACTCCGAGAAATGATTTTCCGGAATGGACTGGGTTACAATTCGTATATTTCTTTTTTTATGGAGGGTCACCGTAAGAAGTAGTGGGTTTTAAGAATCACAAAGGTTTTAGGTTTGAAAAAGTCGGAAAATTCATCATGCGAAAGTTCAAACTATAGAGATTTGGTTGGAATTTACCTTGGGACTCAAAAAAGTGGCTTCCAGTAATGAAATTCATGCCGCATACAAAAGTTATTGAAACATCTTGATATCGGTTTCAAATTAACCCTCCCCCACAAATAAAAAAATGTTATGTTCTATGCTTTGAACATGAACCTAACACTACATTCTTACCACACAGCATGAACAATTACTTGTCTTTTTTGTGAATGATCAAGTGGCCTGCATGAAATTAAAGAGAAACGACTATTTTTATTATCCGTGATCTTTTGATATATTTTCTTCATTATCATATTCTCAACGTAAAAATAAGGATGATGTCAGATGTTTCAACAACACATCAGACAGTAATACCAAATTTGTTCTTTTAAAAAGACGGCCAGAATTTCAAACTACGTGCATTTCGATTGCGTGGGGAGATTCAGAATTGTCCCAAAAGGTGCGCCCAGCTGACACAAAGTTTGTATTCTTATAAAATTTGTCTGAAATTGGTTTGTATTTTACGTAATGATCATGTGAATGGAATTGTATTTTTTTTAAATTCAGAAAATCACGAAGTAATTAAAACATATGGACCTAGAA</canonical>
            <polymorphic>TCCCGAATGTTTAATTCGTTGTTCTCAGTTTGAAGATAATGAACTTTTCACTGTTATACGATGCCCAATGATCACAAAAAGATAGAAAACGTAGGAGAAGAAGAAAGGGAGTGTGAGTGGCAGTGTAAGAATTGGAACCAAGTGTAATTGACGCTGGTCACCCATTCTTGGGATGTTGCCAAGTTGTTGGTCGTTCAAAGTTGTAATAGCAATGACTTTTAGAAAAGCTAATAGCTCGTTGTGTATTGAAAAACAAATGGGACTCCGAGAAATGATTTTCCGGAATGGACTGGGTTACAATTCGTATATTTCTTTTTTTATGGAGGGTCACCGTAAGAAGTAGTGGGTTTTAAGAATCACAAAGGTTTTAGGTTTGAAAAAGTCGGAAAATTCATCATGCGAAAGTTCAAACTATAGAGATTTGGTTGGAATTTACCTTGGGACTCAAAAAAGTGGCTTCCAGTAATGAAATTCATGCCGCATACAAAAGTTATTGAAAYATCTTGATATCGGTTTCAAATTAACCCTCCCCCACAAATAAAAAAATGTTATGTTCTATGCTTTGAACATGAACCTAACACTACATTCTTACCACACAGCATGAACAATTACTTGTCTTTTTTGTGAATGATCAAGTGGCCTGCATGAAATTAAAGAGAAACGACTATTTTTATTATCCGTGATCTTTTGATATATTTTCTTCATTATCATATTCTCAACGTAAAAATAAGGATGATGTCAGATGTTTCAACAACACATCAGACAGTAATACCAAATTTGTTCTTTTAAAAAGACGGCCAGAATTTCAAACTACGTGCATTTCGATTGCGTGGGGAGATTCAGAATTGTCCCAAAAGGTGCGCCCAGCTGACACAAAGTTTGTATTCTTATAAAATTTGTCTGAAATTGGTTTGTATTTTACGTAATGATCATGTGAATGGAATTGTATTTTTTTTAAATTCAGAAAATCACGAAGTAATTAAAACATATGGACCTAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCACAAAGGTTTTAGGTTTG</pcr_primer_p1>
		<pcr_primer_p2>ATGCTGTGTGGTAAGAATGTAGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATCACAAAGGTTTTAGGTTTGAAAAAGTCGGAAAATTCATCATGCGAAAGTTCAAACTATAGAGATTTGGTTGGAATTTACCTTGGGACTCAAAAAAGTGGCTTCCAGTAATGAAATTCATGCCGCATACAAAAGTTATTGAAACATCTTGATATCGGTTTCAAATTAACCCTCCCCCACAAATAAAAAAATGTTATGTTCTATGCTTTGAACATGAACCTAACACTACATTCTTACCACACAGCAT</canonical_amplicon>
		<polymorphic_amplicon>AATCACAAAGGTTTTAGGTTTGAAAAAGTCGGAAAATTCATCATGCGAAAGTTCAAACTATAGAGATTTGGTTGGAATTTACCTTGGGACTCAAAAAAGTGGCTTCCAGTAATGAAATTCATGCCGCATACAAAAGTTATTGAAAYATCTTGATATCGGTTTCAAATTAACCCTCCCCCACAAATAAAAAAATGTTATGTTCTATGCTTTGAACATGAACCTAACACTACATTCTTACCACACAGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14825</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>17238</contig_pos>
        <strand></strand>
        <context>ATTCATGCCG[C/A]ATACAAAAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATTTACCTTGGGACTCAAAAAAGTGGCTTCCAGTAATGAAATTCATGCCG</left_flank>
        <right_flank>ATACAAAAGTTATTGAAACATCTTGATATCGGTTTCAAATTAACCCTCCC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTCTTCTCATCATTGATTCCCGAATGTTTAATTCGTTGTTCTCAGTTTGAAGATAATGAACTTTTCACTGTTATACGATGCCCAATGATCACAAAAAGATAGAAAACGTAGGAGAAGAAGAAAGGGAGTGTGAGTGGCAGTGTAAGAATTGGAACCAAGTGTAATTGACGCTGGTCACCCATTCTTGGGATGTTGCCAAGTTGTTGGTCGTTCAAAGTTGTAATAGCAATGACTTTTAGAAAAGCTAATAGCTCGTTGTGTATTGAAAAACAAATGGGACTCCGAGAAATGATTTTCCGGAATGGACTGGGTTACAATTCGTATATTTCTTTTTTTATGGAGGGTCACCGTAAGAAGTAGTGGGTTTTAAGAATCACAAAGGTTTTAGGTTTGAAAAAGTCGGAAAATTCATCATGCGAAAGTTCAAACTATAGAGATTTGGTTGGAATTTACCTTGGGACTCAAAAAAGTGGCTTCCAGTAATGAAATTCATGCCGCATACAAAAGTTATTGAAACATCTTGATATCGGTTTCAAATTAACCCTCCCCCACAAATAAAAAAATGTTATGTTCTATGCTTTGAACATGAACCTAACACTACATTCTTACCACACAGCATGAACAATTACTTGTCTTTTTTGTGAATGATCAAGTGGCCTGCATGAAATTAAAGAGAAACGACTATTTTTATTATCCGTGATCTTTTGATATATTTTCTTCATTATCATATTCTCAACGTAAAAATAAGGATGATGTCAGATGTTTCAACAACACATCAGACAGTAATACCAAATTTGTTCTTTTAAAAAGACGGCCAGAATTTCAAACTACGTGCATTTCGATTGCGTGGGGAGATTCAGAATTGTCCCAAAAGGTGCGCCCAGCTGACACAAAGTTTGTATTCTTATAAAATTTGTCTGAAATTGGTTTGTATTTTACGTAATGATCATGTGAATGGAATTGTATTTTTTTTAAATTCAGAAAATCACGAAGTAATT</canonical>
            <polymorphic>GTTTCTTCTCATCATTGATTCCCGAATGTTTAATTCGTTGTTCTCAGTTTGAAGATAATGAACTTTTCACTGTTATACGATGCCCAATGATCACAAAAAGATAGAAAACGTAGGAGAAGAAGAAAGGGAGTGTGAGTGGCAGTGTAAGAATTGGAACCAAGTGTAATTGACGCTGGTCACCCATTCTTGGGATGTTGCCAAGTTGTTGGTCGTTCAAAGTTGTAATAGCAATGACTTTTAGAAAAGCTAATAGCTCGTTGTGTATTGAAAAACAAATGGGACTCCGAGAAATGATTTTCCGGAATGGACTGGGTTACAATTCGTATATTTCTTTTTTTATGGAGGGTCACCGTAAGAAGTAGTGGGTTTTAAGAATCACAAAGGTTTTAGGTTTGAAAAAGTCGGAAAATTCATCATGCGAAAGTTCAAACTATAGAGATTTGGTTGGAATTTACCTTGGGACTCAAAAAAGTGGCTTCCAGTAATGAAATTCATGCCGMATACAAAAGTTATTGAAACATCTTGATATCGGTTTCAAATTAACCCTCCCCCACAAATAAAAAAATGTTATGTTCTATGCTTTGAACATGAACCTAACACTACATTCTTACCACACAGCATGAACAATTACTTGTCTTTTTTGTGAATGATCAAGTGGCCTGCATGAAATTAAAGAGAAACGACTATTTTTATTATCCGTGATCTTTTGATATATTTTCTTCATTATCATATTCTCAACGTAAAAATAAGGATGATGTCAGATGTTTCAACAACACATCAGACAGTAATACCAAATTTGTTCTTTTAAAAAGACGGCCAGAATTTCAAACTACGTGCATTTCGATTGCGTGGGGAGATTCAGAATTGTCCCAAAAGGTGCGCCCAGCTGACACAAAGTTTGTATTCTTATAAAATTTGTCTGAAATTGGTTTGTATTTTACGTAATGATCATGTGAATGGAATTGTATTTTTTTTAAATTCAGAAAATCACGAAGTAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCACAAAGGTTTTAGGTTTG</pcr_primer_p1>
		<pcr_primer_p2>ATGCTGTGTGGTAAGAATGTAGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATCACAAAGGTTTTAGGTTTGAAAAAGTCGGAAAATTCATCATGCGAAAGTTCAAACTATAGAGATTTGGTTGGAATTTACCTTGGGACTCAAAAAAGTGGCTTCCAGTAATGAAATTCATGCCGCATACAAAAGTTATTGAAACATCTTGATATCGGTTTCAAATTAACCCTCCCCCACAAATAAAAAAATGTTATGTTCTATGCTTTGAACATGAACCTAACACTACATTCTTACCACACAGCAT</canonical_amplicon>
		<polymorphic_amplicon>AATCACAAAGGTTTTAGGTTTGAAAAAGTCGGAAAATTCATCATGCGAAAGTTCAAACTATAGAGATTTGGTTGGAATTTACCTTGGGACTCAAAAAAGTGGCTTCCAGTAATGAAATTCATGCCGMATACAAAAGTTATTGAAACATCTTGATATCGGTTTCAAATTAACCCTCCCCCACAAATAAAAAAATGTTATGTTCTATGCTTTGAACATGAACCTAACACTACATTCTTACCACACAGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14826</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>25451</contig_pos>
        <strand>+</strand>
        <context>AAGCAGATTT[C/G]TGTGATCCAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAATAAATGCACAAAAAGTGATGATGTTGTAAAAGTTACAAAGCAGATTT</left_flank>
        <right_flank>TGTGATCCACGACTTTTATTGCTCAAAGCGCTGTTGGTTCTAAAGAAAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTAACAGTTTATTATCATAAGAAAAAAGCAAAACATTGATATTTGATTAGAAAGATGATTAGAGAGAAGGGAAGGGGAAAAGATCAAATTGAAAGTGAACACTTTGGAAGATACAGTTCTTGTTTGATGTTGAATCTTTAAGGCATTTGGAAAATTGCAAAACAAAGCGGAAAAAAAGCTTTTTTTTGAAAATGTGTGGACCGGGAAGTGAAAATTAGAAAGAATGGAAAAAGCAACTATTGAATTTTTTCATACAAGTTTTAGTACATGCGATAAAGAAAGTGGACAGGAATTAGGTAAAAAAACAATGCGACAAAAAAATTAGTTATGACGAAGAAAAAATTATTTACCGGTATTGAAACAAAACAATCTGATATTGATCAACCAAAAGAATATTTGGCAAAAAGCAAAAATAGGAAACTCTAAAATATGAGATGGTTCCATAGAATAAATGCACAAAAAGTGATGATGTTGTAAAAGTTACAAAGCAGATTTCTGTGATCCACGACTTTTATTGCTCAAAGCGCTGTTGGTTCTAAAGAAAAGCAGTGATTAGTGTTAAAACGTGCCATATGTGGATTTTTACCTAGCTCGTGGTCGTTGTGATCTACTCCGCGGTCGGAATTCAGAATCCTCTATTTCTTCGATCTCTCCTGGATTTAGTGGCTGCAGTTCTCCGCCGAGACACTCGCTTGCGCGCCGATATCTCTCTTCCATGTTTCTTTCAACTTCGATTAATTCTTGTTCCAGCACCTGGAATATTCTTGTATTTTGAATTAATTGTTGTTATTTCTTGAAATATCGTATTTACCACAAACCAGTAATAGGGATTTAATTTTTGTATTTGGATGTGAGCCAATTTTTCTTATTTCCTGTCAAAGATGCTGTCAACTGATAAATTGTTTATCAGAAAATCAAAAATATTTTGTCGGTTCACACATTTTTGACATGCAAACTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTCTCTTTA</canonical>
            <polymorphic>AAAATTAACAGTTTATTATCATAAGAAAAAAGCAAAACATTGATATTTGATTAGAAAGATGATTAGAGAGAAGGGAAGGGGAAAAGATCAAATTGAAAGTGAACACTTTGGAAGATACAGTTCTTGTTTGATGTTGAATCTTTAAGGCATTTGGAAAATTGCAAAACAAAGCGGAAAAAAAGCTTTTTTTTGAAAATGTGTGGACCGGGAAGTGAAAATTAGAAAGAATGGAAAAAGCAACTATTGAATTTTTTCATACAAGTTTTAGTACATGCGATAAAGAAAGTGGACAGGAATTAGGTAAAAAAACAATGCGACAAAAAAATTAGTTATGACGAAGAAAAAATTATTTACCGGTATTGAAACAAAACAATCTGATATTGATCAACCAAAAGAATATTTGGCAAAAAGCAAAAATAGGAAACTCTAAAATATGAGATGGTTCCATAGAATAAATGCACAAAAAGTGATGATGTTGTAAAAGTTACAAAGCAGATTTSTGTGATCCACGACTTTTATTGCTCAAAGCGCTGTTGGTTCTAAAGAAAAGCAGTGATTAGTGTTAAAACGTGCCATATGTGGATTTTTACCTAGCTCGTGGTCGTTGTGATCTACTCCGCGGTCGGAATTCAGAATCCTCTATTTCTTCGATCTCTCCTGGATTTAGTGGCTGCAGTTCTCCGCCGAGACACTCGCTTGCGCGCCGATATCTCTCTTCCATGTTTCTTTCAACTTCGATTAATTCTTGTTCCAGCACCTGGAATATTCTTGTATTTTGAATTAATTGTTGTTATTTCTTGAAATATCGTATTTACCACAAACCAGTAATAGGGATTTAATTTTTGTATTTGGATGTGAGCCAATTTTTCTTATTTCCTGTCAAAGATGCTGTCAACTGATAAATTGTTTATCAGAAAATCAAAAATATTTTGTCGGTTCACACATTTTTGACATGCAAACTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTCTCTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGCAAAAATAGGAAACTCTAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGAGATCGAAGAAATAGAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGCAAAAATAGGAAACTCTAAAATATGAGATGGTTCCATAGAATAAATGCACAAAAAGTGATGATGTTGTAAAAGTTACAAAGCAGATTTCTGTGATCCACGACTTTTATTGCTCAAAGCGCTGTTGGTTCTAAAGAAAAGCAGTGATTAGTGTTAAAACGTGCCATATGTGGATTTTTACCTAGCTCGTGGTCGTTGTGATCTACTCCGCGGTCGGAATTCAGAATCCTCTATTTCTTCGATCTCTC</canonical_amplicon>
		<polymorphic_amplicon>AAAGCAAAAATAGGAAACTCTAAAATATGAGATGGTTCCATAGAATAAATGCACAAAAAGTGATGATGTTGTAAAAGTTACAAAGCAGATTTSTGTGATCCACGACTTTTATTGCTCAAAGCGCTGTTGGTTCTAAAGAAAAGCAGTGATTAGTGTTAAAACGTGCCATATGTGGATTTTTACCTAGCTCGTGGTCGTTGTGATCTACTCCGCGGTCGGAATTCAGAATCCTCTATTTCTTCGATCTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14827</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>42751</contig_pos>
        <strand>+</strand>
        <context>GGCAATAAAA[A/G]AATAACAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAAAAAAACGTAGAGGAGAATGGGAGCAGGAGGAAAGAGGGCAATAAAA</left_flank>
        <right_flank>AATAACAACTAGGCATAAACGTGAGATGGAGCGAGGAGAGACCTTTTCGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTATTGGATCAGATCTGACGCTGTCAGGAAGTTCATATGATCAGAATTTGTTTCAAATAACTTCTAACCTCAGATAAATTTATCAAGATTCCTTTTCTTGCCTCAACTTTTTGAGTGTGGTTCTTGTGATGAACAAGCGATTTTTTTTCGGTTTGTTGTTTTTCTCATGTCTTTTACTTTTTTCCTCTTTTTTCACTTCTCCCTCCATCATGATGACTTTGTTCTTCTGTTTCTGTCATTTTCTCATTGAGATTCATGTTGATTTGCAAGTGAGAACGGGGAAAAGCCGTCACCGCCGTCACCGGCCACACATATGGAAGATGGAGATGTCGAATGAGAAGAGAAGGCAAAAAATAGCTCTCGGGTTAGTTCTTCGTCATTTTCTTCCCCGTTGGTGATGGCGTAGGGGTGGGTCCCAGAGGTGAAATAAGAAGGAAAGGAAGCAAAGGAAAAAAACGTAGAGGAGAATGGGAGCAGGAGGAAAGAGGGCAATAAAAAAATAACAACTAGGCATAAACGTGAGATGGAGCGAGGAGAGACCTTTTCGTTGTCGGGAGTCCCTCAGATCAATTGGTGGTTGTGGCATTCTGGTTAGAAATGAAGAAACTGAAGATAGAAAAATGAGAAGAAGAAGGTACTAAAAGAAAAACAGAGTCATGAGTTCATGAGTAGGTACGATGTGCTTGGTGCAAGAACAAAAAACGACATCACGAAGAGGACGCTCAATGGTTTTCGGATATCTAGGCAACCACGAATGGAGCCATCAAAAATAGGAATGGGACGGAAGAGGTGATGTATAATTGCAGGTTTCACGAATGGGTTTGAGTTGGTTTTTTTTTTTGAGTAATACGGTAGATAGAGAGAGTGGGATAAAGCGAATAAAAATCTTGAATAATTTTTAAAAGAAATCTTTTGAATTCTAAATAAATTGAAAGCATCTGAAAAACATTTTAATTTTCAGATTATTCAGAAATTGTTGAACACCGTGAATAAATACT</canonical>
            <polymorphic>ATTTATTGGATCAGATCTGACGCTGTCAGGAAGTTCATATGATCAGAATTTGTTTCAAATAACTTCTAACCTCAGATAAATTTATCAAGATTCCTTTTCTTGCCTCAACTTTTTGAGTGTGGTTCTTGTGATGAACAAGCGATTTTTTTTCGGTTTGTTGTTTTTCTCATGTCTTTTACTTTTTTCCTCTTTTTTCACTTCTCCCTCCATCATGATGACTTTGTTCTTCTGTTTCTGTCATTTTCTCATTGAGATTCATGTTGATTTGCAAGTGAGAACGGGGAAAAGCCGTCACCGCCGTCACCGGCCACACATATGGAAGATGGAGATGTCGAATGAGAAGAGAAGGCAAAAAATAGCTCTCGGGTTAGTTCTTCGTCATTTTCTTCCCCGTTGGTGATGGCGTAGGGGTGGGTCCCAGAGGTGAAATAAGAAGGAAAGGAAGCAAAGGAAAAAAACGTAGAGGAGAATGGGAGCAGGAGGAAAGAGGGCAATAAAARAATAACAACTAGGCATAAACGTGAGATGGAGCGAGGAGAGACCTTTTCGTTGTCGGGAGTCCCTCAGATCAATTGGTGGTTGTGGCATTCTGGTTAGAAATGAAGAAACTGAAGATAGAAAAATGAGAAGAAGAAGGTACTAAAAGAAAAACAGAGTCATGAGTTCATGAGTAGGTACGATGTGCTTGGTGCAAGAACAAAAAACGACATCACGAAGAGGACGCTCAATGGTTTTCGGATATCTAGGCAACCACGAATGGAGCCATCAAAAATAGGAATGGGACGGAAGAGGTGATGTATAATTGCAGGTTTCACGAATGGGTTTGAGTTGGTTTTTTTTTTTGAGTAATACGGTAGATAGAGAGAGTGGGATAAAGCGAATAAAAATCTTGAATAATTTTTAAAAGAAATCTTTTGAATTCTAAATAAATTGAAAGCATCTGAAAAACATTTTAATTTTCAGATTATTCAGAAATTGTTGAACACCGTGAATAAATACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTAGTTCTTCGTCATTTTCTT</pcr_primer_p1>
		<pcr_primer_p2>TCAGTTTCTTCATTTCTAACCAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGTTAGTTCTTCGTCATTTTCTTCCCCGTTGGTGATGGCGTAGGGGTGGGTCCCAGAGGTGAAATAAGAAGGAAAGGAAGCAAAGGAAAAAAACGTAGAGGAGAATGGGAGCAGGAGGAAAGAGGGCAATAAAAAAATAACAACTAGGCATAAACGTGAGATGGAGCGAGGAGAGACCTTTTCGTTGTCGGGAGTCCCTCAGATCAATTGGTGGTTGTGGCATTCTGGTTAGAAATGAAGAAACTGA</canonical_amplicon>
		<polymorphic_amplicon>GGTTAGTTCTTCGTCATTTTCTTCCCCGTTGGTGATGGCGTAGGGGTGGGTCCCAGAGGTGAAATAAGAAGGAAAGGAAGCAAAGGAAAAAAACGTAGAGGAGAATGGGAGCAGGAGGAAAGAGGGCAATAAAARAATAACAACTAGGCATAAACGTGAGATGGAGCGAGGAGAGACCTTTTCGTTGTCGGGAGTCCCTCAGATCAATTGGTGGTTGTGGCATTCTGGTTAGAAATGAAGAAACTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14828</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>43204</contig_pos>
        <strand>+</strand>
        <context>GAAAAACATT[C/T]TAATTTTCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAGAAATCTTTTGAATTCTAAATAAATTGAAAGCATCTGAAAAACATT</left_flank>
        <right_flank>TAATTTTCAGATTATTCAGAAATTGTTGAACACCGTGAATAAATACTGTA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAACGTAGAGGAGAATGGGAGCAGGAGGAAAGAGGGCAATAAAAAAATAACAACTAGGCATAAACGTGAGATGGAGCGAGGAGAGACCTTTTCGTTGTCGGGAGTCCCTCAGATCAATTGGTGGTTGTGGCATTCTGGTTAGAAATGAAGAAACTGAAGATAGAAAAATGAGAAGAAGAAGGTACTAAAAGAAAAACAGAGTCATGAGTTCATGAGTAGGTACGATGTGCTTGGTGCAAGAACAAAAAACGACATCACGAAGAGGACGCTCAATGGTTTTCGGATATCTAGGCAACCACGAATGGAGCCATCAAAAATAGGAATGGGACGGAAGAGGTGATGTATAATTGCAGGTTTCACGAATGGGTTTGAGTTGGTTTTTTTTTTTGAGTAATACGGTAGATAGAGAGAGTGGGATAAAGCGAATAAAAATCTTGAATAATTTTTAAAAGAAATCTTTTGAATTCTAAATAAATTGAAAGCATCTGAAAAACATTTTAATTTTCAGATTATTCAGAAATTGTTGAACACCGTGAATAAATACTGTAAATGAGGAAAAGTAAATGAGAACTGAATACAGTAAGCAAACACCTATATGTGCGCAATTTTCTCGGTTTCTACGCAAGATTCCAAAATAAGGTCAAATAACGAAATATTGGTGATTATATGATAAGCACTCTATCAGTTGAGAAAACTTGATATCTAGCATAGGAACCGAGATATTTTAGCTAAAATAGAACGCGATGGGCTTCTATTAAAGCATTTACAAAATTTTAGAAGGAACACGTCCCAATAATTTTTGAAGACGGATTTCCGTTGAAGATGAGGAACATGTGAGAGTTTTGAAAAGAACAATTGGTACATAGAATAGGGAATTTTTGGTTTAAAAATTTTTCAAATTTCGGAGAAAATAGTTAATAAAAAATTAAGGTTATTTTTAAGTTATTCAAACTGCTTGCTTTTTCACAAACCAAAATGATGACATATGAGTTAGAAAC</canonical>
            <polymorphic>AAAAACGTAGAGGAGAATGGGAGCAGGAGGAAAGAGGGCAATAAAAAAATAACAACTAGGCATAAACGTGAGATGGAGCGAGGAGAGACCTTTTCGTTGTCGGGAGTCCCTCAGATCAATTGGTGGTTGTGGCATTCTGGTTAGAAATGAAGAAACTGAAGATAGAAAAATGAGAAGAAGAAGGTACTAAAAGAAAAACAGAGTCATGAGTTCATGAGTAGGTACGATGTGCTTGGTGCAAGAACAAAAAACGACATCACGAAGAGGACGCTCAATGGTTTTCGGATATCTAGGCAACCACGAATGGAGCCATCAAAAATAGGAATGGGACGGAAGAGGTGATGTATAATTGCAGGTTTCACGAATGGGTTTGAGTTGGTTTTTTTTTTTGAGTAATACGGTAGATAGAGAGAGTGGGATAAAGCGAATAAAAATCTTGAATAATTTTTAAAAGAAATCTTTTGAATTCTAAATAAATTGAAAGCATCTGAAAAACATTYTAATTTTCAGATTATTCAGAAATTGTTGAACACCGTGAATAAATACTGTAAATGAGGAAAAGTAAATGAGAACTGAATACAGTAAGCAAACACCTATATGTGCGCAATTTTCTCGGTTTCTACGCAAGATTCCAAAATAAGGTCAAATAACGAAATATTGGTGATTATATGATAAGCACTCTATCAGTTGAGAAAACTTGATATCTAGCATAGGAACCGAGATATTTTAGCTAAAATAGAACGCGATGGGCTTCTATTAAAGCATTTACAAAATTTTAGAAGGAACACGTCCCAATAATTTTTGAAGACGGATTTCCGTTGAAGATGAGGAACATGTGAGAGTTTTGAAAAGAACAATTGGTACATAGAATAGGGAATTTTTGGTTTAAAAATTTTTCAAATTTCGGAGAAAATAGTTAATAAAAAATTAAGGTTATTTTTAAGTTATTCAAACTGCTTGCTTTTTCACAAACCAAAATGATGACATATGAGTTAGAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>448 257 129 60 52 31 12 11</canonical_bands>
                <polymorphic_bands>448 309 129 60 31 12 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATGTATAATTGCAGGTTTCA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTACTGTATTCAGTTCTCATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGATGTATAATTGCAGGTTTCACGAATGGGTTTGAGTTGGTTTTTTTTTTTGAGTAATACGGTAGATAGAGAGAGTGGGATAAAGCGAATAAAAATCTTGAATAATTTTTAAAAGAAATCTTTTGAATTCTAAATAAATTGAAAGCATCTGAAAAACATTTTAATTTTCAGATTATTCAGAAATTGTTGAACACCGTGAATAAATACTGTAAATGAGGAAAAGTAAATGAGAACTGAATACAGTAAGCA</canonical_amplicon>
		<polymorphic_amplicon>TGATGTATAATTGCAGGTTTCACGAATGGGTTTGAGTTGGTTTTTTTTTTTGAGTAATACGGTAGATAGAGAGAGTGGGATAAAGCGAATAAAAATCTTGAATAATTTTTAAAAGAAATCTTTTGAATTCTAAATAAATTGAAAGCATCTGAAAAACATTYTAATTTTCAGATTATTCAGAAATTGTTGAACACCGTGAATAAATACTGTAAATGAGGAAAAGTAAATGAGAACTGAATACAGTAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14829</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>44480</contig_pos>
        <strand>+</strand>
        <context>AACTAAAACA[A/G]TTTTTTTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTTCTGGCTGGCGTAGTATTACACCTGTCTAGAAAAATAACTAAAACA</left_flank>
        <right_flank>TTTTTTTTTCTGATTTTGGCAAAACATTTTTTGCTTTATTGCAGATATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTCGGGGGGCTGTTTTCCACCAATTCCTTTTCCCATCCACTTTTCCAAGCACCAATTCCTGGTCGCTTTTCAATTTGAAAACATTTATTTTTCATTTCTTTCCGTTCAAGGTGAAATATTTTCGAATCTTGCTGTTATCCCCCGACTACTACCTACTGTCATTGTTCCAGTCACAAACCCAAAAAAGAAGGAAAAAACCTCTGTCAAACGTTTTTTTTGGTGGAAGAAATGTGAAAGCGTTCAAAACACCATTAGTAAATAATAGTTAGAAAAAGGAGAAGAAAATGACAATAGCAAGGAAGGGGAAAGAAAAGAAAAATAGGAAATAAATAAGTAAAGGAGAAAAGAATGAAGAAATCAAAAATAGTGAAGTTTGGAGAAATAAGGAGAAGAGAGACATGAAAAGAAGAAGCAGTTTATGAAATTACTGTTATACGATTAGCATAGGTTTTCTGGCTGGCGTAGTATTACACCTGTCTAGAAAAATAACTAAAACAATTTTTTTTTCTGATTTTGGCAAAACATTTTTTGCTTTATTGCAGATATTTTTAAAGGAAAACTGCCACGTTTTATCAGGACTACAAATTAATTTTCCTTTGAAACAGTAAGATGGCACAACGGATAGTACCAGAAATTGAAAAAGATTCTAATCATCATCACTCTCAACATCCAACCTTTGAAATAAAAATTGAAAACGAGGGACAGGAGAGAAATGGGCGGGGAAAACTGAGTGGGGGCCGAAACGCTCACGGGCTCGTCGGAACTATATAATTCCTTCTTATGACTGTCCTGGGAATTGGGCCCGGAGGCACTAGGGCCAGAGGCTAACCCAGAAAAGCAGTGCAGAAAACTCCCAGAGCCGTGTGGAAATGTTCCAATCTCTTGTCTCGGGCAATGAGATTGAGCGAAGAAAAAAAATGGAGAGAATAGGTTAGGAGACACTGAAAATTTCTCTCTCTCTCCATATACATACAAAAAAGAAAAAAGAGGGTCCGACG</canonical>
            <polymorphic>AAGTCGGGGGGCTGTTTTCCACCAATTCCTTTTCCCATCCACTTTTCCAAGCACCAATTCCTGGTCGCTTTTCAATTTGAAAACATTTATTTTTCATTTCTTTCCGTTCAAGGTGAAATATTTTCGAATCTTGCTGTTATCCCCCGACTACTACCTACTGTCATTGTTCCAGTCACAAACCCAAAAAAGAAGGAAAAAACCTCTGTCAAACGTTTTTTTTGGTGGAAGAAATGTGAAAGCGTTCAAAACACCATTAGTAAATAATAGTTAGAAAAAGGAGAAGAAAATGACAATAGCAAGGAAGGGGAAAGAAAAGAAAAATAGGAAATAAATAAGTAAAGGAGAAAAGAATGAAGAAATCAAAAATAGTGAAGTTTGGAGAAATAAGGAGAAGAGAGACATGAAAAGAAGAAGCAGTTTATGAAATTACTGTTATACGATTAGCATAGGTTTTCTGGCTGGCGTAGTATTACACCTGTCTAGAAAAATAACTAAAACARTTTTTTTTTCTGATTTTGGCAAAACATTTTTTGCTTTATTGCAGATATTTTTAAAGGAAAACTGCCACGTTTTATCAGGACTACAAATTAATTTTCCTTTGAAACAGTAAGATGGCACAACGGATAGTACCAGAAATTGAAAAAGATTCTAATCATCATCACTCTCAACATCCAACCTTTGAAATAAAAATTGAAAACGAGGGACAGGAGAGAAATGGGCGGGGAAAACTGAGTGGGGGCCGAAACGCTCACGGGCTCGTCGGAACTATATAATTCCTTCTTATGACTGTCCTGGGAATTGGGCCCGGAGGCACTAGGGCCAGAGGCTAACCCAGAAAAGCAGTGCAGAAAACTCCCAGAGCCGTGTGGAAATGTTCCAATCTCTTGTCTCGGGCAATGAGATTGAGCGAAGAAAAAAAATGGAGAGAATAGGTTAGGAGACACTGAAAATTTCTCTCTCTCTCCATATACATACAAAAAAGAAAAAAGAGGGTCCGACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>351 152 87 83 74 54 52 45 32 25 23 18 4</canonical_bands>
                <polymorphic_bands>351 161 152 83 54 52 45 32 25 23 18 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACGATTAGCATAGGTTTTCTG</pcr_primer_p1>
		<pcr_primer_p2>TATTTCAAAGGTTGGATGTTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATACGATTAGCATAGGTTTTCTGGCTGGCGTAGTATTACACCTGTCTAGAAAAATAACTAAAACAATTTTTTTTTCTGATTTTGGCAAAACATTTTTTGCTTTATTGCAGATATTTTTAAAGGAAAACTGCCACGTTTTATCAGGACTACAAATTAATTTTCCTTTGAAACAGTAAGATGGCACAACGGATAGTACCAGAAATTGAAAAAGATTCTAATCATCATCACTCTCAACATCCAACCTTTGAAATA</canonical_amplicon>
		<polymorphic_amplicon>ATACGATTAGCATAGGTTTTCTGGCTGGCGTAGTATTACACCTGTCTAGAAAAATAACTAAAACARTTTTTTTTTCTGATTTTGGCAAAACATTTTTTGCTTTATTGCAGATATTTTTAAAGGAAAACTGCCACGTTTTATCAGGACTACAAATTAATTTTCCTTTGAAACAGTAAGATGGCACAACGGATAGTACCAGAAATTGAAAAAGATTCTAATCATCATCACTCTCAACATCCAACCTTTGAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14830</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>58324</contig_pos>
        <strand>+</strand>
        <context>MAATTTATTK[C/T]CGTATCGTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAACGATGACGTCCAATTTTTTTGAGTGCGCTCCACTTTCCAATTTATTG</left_flank>
        <right_flank>CGTATCGTCAGAATGCTTGAAACTCTTACCTTGAAGATCTCTAGGTCCCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTAATTTCTCAACAATTCGAAATTCCGGTTTTCGAAATTTGGAGCCAGTCCGAAAACTGAAAGTCCGACACTTTGAAAAAGTTAAAAATCTGACCATTTTTTTAATTCTGTATCTTTAAACTATTCGAAATTTTGACTTCTAAAAACTCGGAGCAGTTCGAATCTTCAAAAATGACAAAATTAAAATTTTAAAAGTTTCATTCCGCATACTCCATAAAGCAAATCTGTTTTTTGAAGTTTCTGCAGAAATTGTTCTTCAATGTTTTTGAAAACGCAATATTCAAAACTTCAAGATGTTTTGAAATAAATGATTTTCATAATTTCCCAACTAAAATATGATAATTTCCAATTTTCGCAGTCATGAAGATTTTTTTCTGCTGCTCTCTTTTCTCCCAATGTATTTTTTTTATGTTGATTATGTTGTCTTCCTTTCCAAACGAAACTTTGCAACGATGACGTCCAATTTTTTTGAGTGCGCTCCACTTTCCAATTTATTGTCGTATCGTCAGAATGCTTGAAACTCTTACCTTGAAGATCTCTAGGTCCCACGCCCTGCGCTCTTAAAACTATACGAACACTTGAGACACCAAGATGGATAGCACTAATGCCGAGGTTTCGTATTTTCTAGAAAATCACATTAGTCATTCATTTTGACATCACAGTCTTCTCGGGAAAAAAAACGACAGGTGAAAATTGAGACGGAGTGATGTGATCTTGTCAATACCGTCTGAAAATTGTTATTCAAAAATGGCAAAAATTCAGAGAACATAGGGGAACACAACAACGAGTTCAGAAATTCGGAACATGTTATTTCCATTATACAGGTGATCTATGTTAGTGGAGCATTTGATCTCTTCCATGCAGGACATTTATCGTTTTTGGAAGCGGCAAAAGAGTTGGGAGATCACTTGATTGTTGGAATTGTTGGAGATGATGTGAGAAATCAAATGAACTGAGCGAAAGAAATATATTAACGAGTTTCAGGATGTGAACGAAGA</canonical>
            <polymorphic>GTGTAATTTCTCAACAATTCGAAATTCCGGTTTTCGAAATTTGGAGCCAGTCCGAAAACTGAAAGTCCGACACTTTGAAAAAGTTAAAAATCTGACCATTTTTTTAATTCTGTATCTTTAAACTATTCGAAATTTTGACTTCTAAAAACTCGGAGCAGTTCGAATCTTCAAAAATGACAAAATTAAAATTTTAAAAGTTTCATTCCGCATACTCCATAAAGCAAATCTGTTTTTTGAAGTTTCTGCAGAAATTGTTCTTCAATGTTTTTGAAAACGCAATATTCAAAACTTCAAGATGTTTTGAAATAAATGATTTTCATAATTTCCCAACTAAAATATGATAATTTCCAATTTTCGCAGTCATGAAGATTTTTTTCTGCTGCTCTCTTTTCTCCCAATGTATTTTTTTTATGTTGATTATGTTGTCTTCCTTTCCAAACGAAACTTTGCAACGATGACGTCCAATTTTTTTGAGTGCGCTCCACTTTCCAATTTATTGYCGTATCGTCAGAATGCTTGAAACTCTTACCTTGAAGATCTCTAGGTCCCACGCCCTGCGCTCTTAAAACTATACGAACACTTGAGACACCAAGATGGATAGCACTAATGCCGAGGTTTCGTATTTTCTAGAAAATCACATTAGTCATTCATTTTGACATCACAGTCTTCTCGGGAAAAAAAACGACAGGTGAAAATTGAGACGGAGTGATGTGATCTTGTCAATACCGTCTGAAAATTGTTATTCAAAAATGGCAAAAATTCAGAGAACATAGGGGAACACAACAACGAGTTCAGAAATTCGGAACATGTTATTTCCATTATACAGGTGATCTATGTTAGTGGAGCATTTGATCTCTTCCATGCAGGACATTTATCGTTTTTGGAAGCGGCAAAAGAGTTGGGAGATCACTTGATTGTTGGAATTGTTGGAGATGATGTGAGAAATCAAATGAACTGAGCGAAAGAAATATATTAACGAGTTTCAGGATGTGAACGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGATTATGTTGTCTTCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>TGTCAAAATGAATGACTAATGTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTGATTATGTTGTCTTCCTTTCCAAACGAAACTTTGCAACGATGACGTCCAATTTTTTTGAGTGCGCTCCACTTTCCAATTTATTGTCGTATCGTCAGAATGCTTGAAACTCTTACCTTGAAGATCTCTAGGTCCCACGCCCTGCGCTCTTAAAACTATACGAACACTTGAGACACCAAGATGGATAGCACTAATGCCGAGGTTTCGTATTTTCTAGAAAATCACATTAGTCATTCATTTTGACA</canonical_amplicon>
		<polymorphic_amplicon>GTTGATTATGTTGTCTTCCTTTCCAAACGAAACTTTGCAACGATGACGTCCAATTTTTTTGAGTGCGCTCCACTTTCCAATTTATTGYCGTATCGTCAGAATGCTTGAAACTCTTACCTTGAAGATCTCTAGGTCCCACGCCCTGCGCTCTTAAAACTATACGAACACTTGAGACACCAAGATGGATAGCACTAATGCCGAGGTTTCGTATTTTCTAGAAAATCACATTAGTCATTCATTTTGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14831</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>58323</contig_pos>
        <strand>+</strand>
        <context>CMAATTTATT[G/T]YCGTATCGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCAACGATGACGTCCAATTTTTTTGAGTGCGCTCCACTTTCCAATTTATT</left_flank>
        <right_flank>TCGTATCGTCAGAATGCTTGAAACTCTTACCTTGAAGATCTCTAGGTCCC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGTAATTTCTCAACAATTCGAAATTCCGGTTTTCGAAATTTGGAGCCAGTCCGAAAACTGAAAGTCCGACACTTTGAAAAAGTTAAAAATCTGACCATTTTTTTAATTCTGTATCTTTAAACTATTCGAAATTTTGACTTCTAAAAACTCGGAGCAGTTCGAATCTTCAAAAATGACAAAATTAAAATTTTAAAAGTTTCATTCCGCATACTCCATAAAGCAAATCTGTTTTTTGAAGTTTCTGCAGAAATTGTTCTTCAATGTTTTTGAAAACGCAATATTCAAAACTTCAAGATGTTTTGAAATAAATGATTTTCATAATTTCCCAACTAAAATATGATAATTTCCAATTTTCGCAGTCATGAAGATTTTTTTCTGCTGCTCTCTTTTCTCCCAATGTATTTTTTTTATGTTGATTATGTTGTCTTCCTTTCCAAACGAAACTTTGCAACGATGACGTCCAATTTTTTTGAGTGCGCTCCACTTTCCAATTTATTGTCGTATCGTCAGAATGCTTGAAACTCTTACCTTGAAGATCTCTAGGTCCCACGCCCTGCGCTCTTAAAACTATACGAACACTTGAGACACCAAGATGGATAGCACTAATGCCGAGGTTTCGTATTTTCTAGAAAATCACATTAGTCATTCATTTTGACATCACAGTCTTCTCGGGAAAAAAAACGACAGGTGAAAATTGAGACGGAGTGATGTGATCTTGTCAATACCGTCTGAAAATTGTTATTCAAAAATGGCAAAAATTCAGAGAACATAGGGGAACACAACAACGAGTTCAGAAATTCGGAACATGTTATTTCCATTATACAGGTGATCTATGTTAGTGGAGCATTTGATCTCTTCCATGCAGGACATTTATCGTTTTTGGAAGCGGCAAAAGAGTTGGGAGATCACTTGATTGTTGGAATTGTTGGAGATGATGTGAGAAATCAAATGAACTGAGCGAAAGAAATATATTAACGAGTTTCAGGATGTGAACGAAG</canonical>
            <polymorphic>AGTGTAATTTCTCAACAATTCGAAATTCCGGTTTTCGAAATTTGGAGCCAGTCCGAAAACTGAAAGTCCGACACTTTGAAAAAGTTAAAAATCTGACCATTTTTTTAATTCTGTATCTTTAAACTATTCGAAATTTTGACTTCTAAAAACTCGGAGCAGTTCGAATCTTCAAAAATGACAAAATTAAAATTTTAAAAGTTTCATTCCGCATACTCCATAAAGCAAATCTGTTTTTTGAAGTTTCTGCAGAAATTGTTCTTCAATGTTTTTGAAAACGCAATATTCAAAACTTCAAGATGTTTTGAAATAAATGATTTTCATAATTTCCCAACTAAAATATGATAATTTCCAATTTTCGCAGTCATGAAGATTTTTTTCTGCTGCTCTCTTTTCTCCCAATGTATTTTTTTTATGTTGATTATGTTGTCTTCCTTTCCAAACGAAACTTTGCAACGATGACGTCCAATTTTTTTGAGTGCGCTCCACTTTCCAATTTATTKTCGTATCGTCAGAATGCTTGAAACTCTTACCTTGAAGATCTCTAGGTCCCACGCCCTGCGCTCTTAAAACTATACGAACACTTGAGACACCAAGATGGATAGCACTAATGCCGAGGTTTCGTATTTTCTAGAAAATCACATTAGTCATTCATTTTGACATCACAGTCTTCTCGGGAAAAAAAACGACAGGTGAAAATTGAGACGGAGTGATGTGATCTTGTCAATACCGTCTGAAAATTGTTATTCAAAAATGGCAAAAATTCAGAGAACATAGGGGAACACAACAACGAGTTCAGAAATTCGGAACATGTTATTTCCATTATACAGGTGATCTATGTTAGTGGAGCATTTGATCTCTTCCATGCAGGACATTTATCGTTTTTGGAAGCGGCAAAAGAGTTGGGAGATCACTTGATTGTTGGAATTGTTGGAGATGATGTGAGAAATCAAATGAACTGAGCGAAAGAAATATATTAACGAGTTTCAGGATGTGAACGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGATTATGTTGTCTTCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>TGTCAAAATGAATGACTAATGTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTGATTATGTTGTCTTCCTTTCCAAACGAAACTTTGCAACGATGACGTCCAATTTTTTTGAGTGCGCTCCACTTTCCAATTTATTGTCGTATCGTCAGAATGCTTGAAACTCTTACCTTGAAGATCTCTAGGTCCCACGCCCTGCGCTCTTAAAACTATACGAACACTTGAGACACCAAGATGGATAGCACTAATGCCGAGGTTTCGTATTTTCTAGAAAATCACATTAGTCATTCATTTTGACA</canonical_amplicon>
		<polymorphic_amplicon>GTTGATTATGTTGTCTTCCTTTCCAAACGAAACTTTGCAACGATGACGTCCAATTTTTTTGAGTGCGCTCCACTTTCCAATTTATTKTCGTATCGTCAGAATGCTTGAAACTCTTACCTTGAAGATCTCTAGGTCCCACGCCCTGCGCTCTTAAAACTATACGAACACTTGAGACACCAAGATGGATAGCACTAATGCCGAGGTTTCGTATTTTCTAGAAAATCACATTAGTCATTCATTTTGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14832</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>58314</contig_pos>
        <strand>+</strand>
        <context>CTCCACTTTC[A/C]AATTTATTKY</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGAAACTTTGCAACGATGACGTCCAATTTTTTTGAGTGCGCTCCACTTTC</left_flank>
        <right_flank>AATTTATTGTCGTATCGTCAGAATGCTTGAAACTCTTACCTTGAAGATCT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAAAATAGTGTAATTTCTCAACAATTCGAAATTCCGGTTTTCGAAATTTGGAGCCAGTCCGAAAACTGAAAGTCCGACACTTTGAAAAAGTTAAAAATCTGACCATTTTTTTAATTCTGTATCTTTAAACTATTCGAAATTTTGACTTCTAAAAACTCGGAGCAGTTCGAATCTTCAAAAATGACAAAATTAAAATTTTAAAAGTTTCATTCCGCATACTCCATAAAGCAAATCTGTTTTTTGAAGTTTCTGCAGAAATTGTTCTTCAATGTTTTTGAAAACGCAATATTCAAAACTTCAAGATGTTTTGAAATAAATGATTTTCATAATTTCCCAACTAAAATATGATAATTTCCAATTTTCGCAGTCATGAAGATTTTTTTCTGCTGCTCTCTTTTCTCCCAATGTATTTTTTTTATGTTGATTATGTTGTCTTCCTTTCCAAACGAAACTTTGCAACGATGACGTCCAATTTTTTTGAGTGCGCTCCACTTTCCAATTTATTGTCGTATCGTCAGAATGCTTGAAACTCTTACCTTGAAGATCTCTAGGTCCCACGCCCTGCGCTCTTAAAACTATACGAACACTTGAGACACCAAGATGGATAGCACTAATGCCGAGGTTTCGTATTTTCTAGAAAATCACATTAGTCATTCATTTTGACATCACAGTCTTCTCGGGAAAAAAAACGACAGGTGAAAATTGAGACGGAGTGATGTGATCTTGTCAATACCGTCTGAAAATTGTTATTCAAAAATGGCAAAAATTCAGAGAACATAGGGGAACACAACAACGAGTTCAGAAATTCGGAACATGTTATTTCCATTATACAGGTGATCTATGTTAGTGGAGCATTTGATCTCTTCCATGCAGGACATTTATCGTTTTTGGAAGCGGCAAAAGAGTTGGGAGATCACTTGATTGTTGGAATTGTTGGAGATGATGTGAGAAATCAAATGAACTGAGCGAAAGAAATATATTAACGAGTTTCAGGATG</canonical>
            <polymorphic>TTTGAAAATAGTGTAATTTCTCAACAATTCGAAATTCCGGTTTTCGAAATTTGGAGCCAGTCCGAAAACTGAAAGTCCGACACTTTGAAAAAGTTAAAAATCTGACCATTTTTTTAATTCTGTATCTTTAAACTATTCGAAATTTTGACTTCTAAAAACTCGGAGCAGTTCGAATCTTCAAAAATGACAAAATTAAAATTTTAAAAGTTTCATTCCGCATACTCCATAAAGCAAATCTGTTTTTTGAAGTTTCTGCAGAAATTGTTCTTCAATGTTTTTGAAAACGCAATATTCAAAACTTCAAGATGTTTTGAAATAAATGATTTTCATAATTTCCCAACTAAAATATGATAATTTCCAATTTTCGCAGTCATGAAGATTTTTTTCTGCTGCTCTCTTTTCTCCCAATGTATTTTTTTTATGTTGATTATGTTGTCTTCCTTTCCAAACGAAACTTTGCAACGATGACGTCCAATTTTTTTGAGTGCGCTCCACTTTCMAATTTATTGTCGTATCGTCAGAATGCTTGAAACTCTTACCTTGAAGATCTCTAGGTCCCACGCCCTGCGCTCTTAAAACTATACGAACACTTGAGACACCAAGATGGATAGCACTAATGCCGAGGTTTCGTATTTTCTAGAAAATCACATTAGTCATTCATTTTGACATCACAGTCTTCTCGGGAAAAAAAACGACAGGTGAAAATTGAGACGGAGTGATGTGATCTTGTCAATACCGTCTGAAAATTGTTATTCAAAAATGGCAAAAATTCAGAGAACATAGGGGAACACAACAACGAGTTCAGAAATTCGGAACATGTTATTTCCATTATACAGGTGATCTATGTTAGTGGAGCATTTGATCTCTTCCATGCAGGACATTTATCGTTTTTGGAAGCGGCAAAAGAGTTGGGAGATCACTTGATTGTTGGAATTGTTGGAGATGATGTGAGAAATCAAATGAACTGAGCGAAAGAAATATATTAACGAGTTTCAGGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGATTATGTTGTCTTCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>TGTCAAAATGAATGACTAATGTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTGATTATGTTGTCTTCCTTTCCAAACGAAACTTTGCAACGATGACGTCCAATTTTTTTGAGTGCGCTCCACTTTCCAATTTATTGTCGTATCGTCAGAATGCTTGAAACTCTTACCTTGAAGATCTCTAGGTCCCACGCCCTGCGCTCTTAAAACTATACGAACACTTGAGACACCAAGATGGATAGCACTAATGCCGAGGTTTCGTATTTTCTAGAAAATCACATTAGTCATTCATTTTGACA</canonical_amplicon>
		<polymorphic_amplicon>GTTGATTATGTTGTCTTCCTTTCCAAACGAAACTTTGCAACGATGACGTCCAATTTTTTTGAGTGCGCTCCACTTTCMAATTTATTGTCGTATCGTCAGAATGCTTGAAACTCTTACCTTGAAGATCTCTAGGTCCCACGCCCTGCGCTCTTAAAACTATACGAACACTTGAGACACCAAGATGGATAGCACTAATGCCGAGGTTTCGTATTTTCTAGAAAATCACATTAGTCATTCATTTTGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14834</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>58204</contig_pos>
        <strand>+</strand>
        <context>TTTTTTTCTG[C/T]TGCTCTCTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTAAAATATGATAATTTCCAATTTTCGCAGTCATGAAGATTTTTTTCTG</left_flank>
        <right_flank>TGCTCTCTTTTCTCCCAATGTATTTTTTTTATGTTGATTATGTTGTCTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCCAAATATCAGGAAAACTTTTTTTTTTGATTTCTGGCCTCCTTTAAAATTATGAAAAACTCCAATAATAGCAAACCGAAACTTTGAAATACTGAAAAATTGGAAAATGTTTGAAAATAGTGTAATTTCTCAACAATTCGAAATTCCGGTTTTCGAAATTTGGAGCCAGTCCGAAAACTGAAAGTCCGACACTTTGAAAAAGTTAAAAATCTGACCATTTTTTTAATTCTGTATCTTTAAACTATTCGAAATTTTGACTTCTAAAAACTCGGAGCAGTTCGAATCTTCAAAAATGACAAAATTAAAATTTTAAAAGTTTCATTCCGCATACTCCATAAAGCAAATCTGTTTTTTGAAGTTTCTGCAGAAATTGTTCTTCAATGTTTTTGAAAACGCAATATTCAAAACTTCAAGATGTTTTGAAATAAATGATTTTCATAATTTCCCAACTAAAATATGATAATTTCCAATTTTCGCAGTCATGAAGATTTTTTTCTGCTGCTCTCTTTTCTCCCAATGTATTTTTTTTATGTTGATTATGTTGTCTTCCTTTCCAAACGAAACTTTGCAACGATGACGTCCAATTTTTTTGAGTGCGCTCCACTTTCCAATTTATTGTCGTATCGTCAGAATGCTTGAAACTCTTACCTTGAAGATCTCTAGGTCCCACGCCCTGCGCTCTTAAAACTATACGAACACTTGAGACACCAAGATGGATAGCACTAATGCCGAGGTTTCGTATTTTCTAGAAAATCACATTAGTCATTCATTTTGACATCACAGTCTTCTCGGGAAAAAAAACGACAGGTGAAAATTGAGACGGAGTGATGTGATCTTGTCAATACCGTCTGAAAATTGTTATTCAAAAATGGCAAAAATTCAGAGAACATAGGGGAACACAACAACGAGTTCAGAAATTCGGAACATGTTATTTCCATTATACAGGTGATCTATGTTAGTGGAGCATTTGATCTCTTCCATGCAGGACATTTATCGTTT</canonical>
            <polymorphic>GGCCAAATATCAGGAAAACTTTTTTTTTTGATTTCTGGCCTCCTTTAAAATTATGAAAAACTCCAATAATAGCAAACCGAAACTTTGAAATACTGAAAAATTGGAAAATGTTTGAAAATAGTGTAATTTCTCAACAATTCGAAATTCCGGTTTTCGAAATTTGGAGCCAGTCCGAAAACTGAAAGTCCGACACTTTGAAAAAGTTAAAAATCTGACCATTTTTTTAATTCTGTATCTTTAAACTATTCGAAATTTTGACTTCTAAAAACTCGGAGCAGTTCGAATCTTCAAAAATGACAAAATTAAAATTTTAAAAGTTTCATTCCGCATACTCCATAAAGCAAATCTGTTTTTTGAAGTTTCTGCAGAAATTGTTCTTCAATGTTTTTGAAAACGCAATATTCAAAACTTCAAGATGTTTTGAAATAAATGATTTTCATAATTTCCCAACTAAAATATGATAATTTCCAATTTTCGCAGTCATGAAGATTTTTTTCTGYTGCTCTCTTTTCTCCCAATGTATTTTTTTTATGTTGATTATGTTGTCTTCCTTTCCAAACGAAACTTTGCAACGATGACGTCCAATTTTTTTGAGTGCGCTCCACTTTCCAATTTATTGTCGTATCGTCAGAATGCTTGAAACTCTTACCTTGAAGATCTCTAGGTCCCACGCCCTGCGCTCTTAAAACTATACGAACACTTGAGACACCAAGATGGATAGCACTAATGCCGAGGTTTCGTATTTTCTAGAAAATCACATTAGTCATTCATTTTGACATCACAGTCTTCTCGGGAAAAAAAACGACAGGTGAAAATTGAGACGGAGTGATGTGATCTTGTCAATACCGTCTGAAAATTGTTATTCAAAAATGGCAAAAATTCAGAGAACATAGGGGAACACAACAACGAGTTCAGAAATTCGGAACATGTTATTTCCATTATACAGGTGATCTATGTTAGTGGAGCATTTGATCTCTTCCATGCAGGACATTTATCGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAAGATGTTTTGAAATAAATGA</pcr_primer_p1>
		<pcr_primer_p2>GATCTTCAAGGTAAGAGTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCAAGATGTTTTGAAATAAATGATTTTCATAATTTCCCAACTAAAATATGATAATTTCCAATTTTCGCAGTCATGAAGATTTTTTTCTGCTGCTCTCTTTTCTCCCAATGTATTTTTTTTATGTTGATTATGTTGTCTTCCTTTCCAAACGAAACTTTGCAACGATGACGTCCAATTTTTTTGAGTGCGCTCCACTTTCCAATTTATTGTCGTATCGTCAGAATGCTTGAAACTCTTACCTTGAAGATC</canonical_amplicon>
		<polymorphic_amplicon>TTCAAGATGTTTTGAAATAAATGATTTTCATAATTTCCCAACTAAAATATGATAATTTCCAATTTTCGCAGTCATGAAGATTTTTTTCTGYTGCTCTCTTTTCTCCCAATGTATTTTTTTTATGTTGATTATGTTGTCTTCCTTTCCAAACGAAACTTTGCAACGATGACGTCCAATTTTTTTGAGTGCGCTCCACTTTCCAATTTATTGTCGTATCGTCAGAATGCTTGAAACTCTTACCTTGAAGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14835</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>60744</contig_pos>
        <strand>+</strand>
        <context>CCTCAGATCT[C/T]TTCTAGCTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGAACAGGTGATTTTTTTGTGACGGGTAAGCGTAACAAGCCTCAGATCT</left_flank>
        <right_flank>TTCTAGCTTCGCCCCCAAAAAAATCCGTCGATATGCGTCGATAGCCGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCCTCATTATTATTTTCCATGATTTTTTTGTTACTCATCAATTAACTCAAATAAAAATAGACTATATTTAGTTTAACTTCACTTGCAATTCGTGACTTTTTCACAACTTTTTTCTTCCATTCATTTTTCCTTGTAACTCATATGACGAATTAACATACATCCTTCCCCCTATTCTTCTTTTTTCAATTACCACTGCAAACACATAGTTAATGAAATTTGACCTTCCTTATCCCGTGTTTATCCCCTTTCTGAAATAATGATGTAGTTCTGATGACAGCCCAAAAATATGGAAAAAAATGTTTCATCTGTTTTTCTTTCCATTGTGTTCTGGAACCGAGTAAAAGAGCTGAGATATGTGGTGTTGTTACTTAAAATAAATGCTTAAAATAGCTCGAACATGCGCCTACTTCATCTAACATTTTCTTCGTAATTTGGACAATTCCAGTGTTGAACAGGTGATTTTTTTGTGACGGGTAAGCGTAACAAGCCTCAGATCTCTTCTAGCTTCGCCCCCAAAAAAATCCGTCGATATGCGTCGATAGCCGAAAATCACCTGTCTTGAATGCCTTCATAAGCCCCTCCGGAATCCATATTTTCCAGTTTTTCCAGCTTTCTTCTTTCTTTTTCTTATTGCTTTTTTTATTCCTCTACCTGCTCTCAGTATTTTTATGGGCGGAGTCCTGACAACTTTTCAAAAATTCCGTTTCCCTGAAACATTAAAGTTTAGGCTCCACCTCTTCTGAAGGGGGTTTACGAGCTGGGACCTCTCATTCCGAGCTTCATTCGCATCCCAGCATTTCTCCGAGCTTCGTCTTCTTTCTCTTCATTCTCTTTTTGACTTTTCACAATTTTTACTACATTCCGTTTTTCTCTTCTTGAGGTCATGTTTAAATTTCTTCAGTTTCCAGGTAACGCTGAAGACATAAAACATGTTCGGAATCACGAAATTTGCTGTTCTCATCTTGCTATTTGTATGCATGGTGGAGGGAGCCAAACGC</canonical>
            <polymorphic>CTTCCTCATTATTATTTTCCATGATTTTTTTGTTACTCATCAATTAACTCAAATAAAAATAGACTATATTTAGTTTAACTTCACTTGCAATTCGTGACTTTTTCACAACTTTTTTCTTCCATTCATTTTTCCTTGTAACTCATATGACGAATTAACATACATCCTTCCCCCTATTCTTCTTTTTTCAATTACCACTGCAAACACATAGTTAATGAAATTTGACCTTCCTTATCCCGTGTTTATCCCCTTTCTGAAATAATGATGTAGTTCTGATGACAGCCCAAAAATATGGAAAAAAATGTTTCATCTGTTTTTCTTTCCATTGTGTTCTGGAACCGAGTAAAAGAGCTGAGATATGTGGTGTTGTTACTTAAAATAAATGCTTAAAATAGCTCGAACATGCGCCTACTTCATCTAACATTTTCTTCGTAATTTGGACAATTCCAGTGTTGAACAGGTGATTTTTTTGTGACGGGTAAGCGTAACAAGCCTCAGATCTYTTCTAGCTTCGCCCCCAAAAAAATCCGTCGATATGCGTCGATAGCCGAAAATCACCTGTCTTGAATGCCTTCATAAGCCCCTCCGGAATCCATATTTTCCAGTTTTTCCAGCTTTCTTCTTTCTTTTTCTTATTGCTTTTTTTATTCCTCTACCTGCTCTCAGTATTTTTATGGGCGGAGTCCTGACAACTTTTCAAAAATTCCGTTTCCCTGAAACATTAAAGTTTAGGCTCCACCTCTTCTGAAGGGGGTTTACGAGCTGGGACCTCTCATTCCGAGCTTCATTCGCATCCCAGCATTTCTCCGAGCTTCGTCTTCTTTCTCTTCATTCTCTTTTTGACTTTTCACAATTTTTACTACATTCCGTTTTTCTCTTCTTGAGGTCATGTTTAAATTTCTTCAGTTTCCAGGTAACGCTGAAGACATAAAACATGTTCGGAATCACGAAATTTGCTGTTCTCATCTTGCTATTTGTATGCATGGTGGAGGGAGCCAAACGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCTTCGTAATTTGGACAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAATACTGAGAGCAGGTAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCTTCGTAATTTGGACAATTCCAGTGTTGAACAGGTGATTTTTTTGTGACGGGTAAGCGTAACAAGCCTCAGATCTCTTCTAGCTTCGCCCCCAAAAAAATCCGTCGATATGCGTCGATAGCCGAAAATCACCTGTCTTGAATGCCTTCATAAGCCCCTCCGGAATCCATATTTTCCAGTTTTTCCAGCTTTCTTCTTTCTTTTTCTTATTGCTTTTTTTATTCCTCTACCTGCTCTCAGTATTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCTTCGTAATTTGGACAATTCCAGTGTTGAACAGGTGATTTTTTTGTGACGGGTAAGCGTAACAAGCCTCAGATCTYTTCTAGCTTCGCCCCCAAAAAAATCCGTCGATATGCGTCGATAGCCGAAAATCACCTGTCTTGAATGCCTTCATAAGCCCCTCCGGAATCCATATTTTCCAGTTTTTCCAGCTTTCTTCTTTCTTTTTCTTATTGCTTTTTTTATTCCTCTACCTGCTCTCAGTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14836</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>62928</contig_pos>
        <strand>+</strand>
        <context>ACATCTCAGT[G/T]ACAAATGCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGACAGAATAATAGAATCTGATGGAAATTTATACTCACCAACATCTCAGT</left_flank>
        <right_flank>ACAAATGCGGCTGACGATTCTGGCACAAAAAACCCGACAACACGTTCTGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACAGTTGGCAAATTCCTGGTGAACTGGAGCTGGATACGGCAAACCTGGATACTGTATCATCAAACGTGGCGCTGTTGCTCGGCCATTTGGCAATCCAGATGGCTGTCCGTACTTTCGTTCGAGCTCTTTGACCATATCGACCATCGAAATCCGATCAGCAGCATCACAAGAAAAGTTAGTCGATTTATCAGTGGTTTCGATTTTTCTACGCTTTGGGGCACTCGCTTCCTGTGGAACTTTTCTTTTGTTGGATGAAGAGCTCACTGTAGAATCCTGGCACTCGTCATCGGAAGAAGTCGTGTCCGAGTCATCATCGGTGTCTTCTGCTCTCTCCGAGTCGTTGGAGTTGGTATTTAGAACGATTCGAGACATTTCTCCAGCGTATACAGTCACTCCTGGAGTGTTGCTCAAAGCGAGCTCCTAGAAAATAGAAATTTAAGACTTGGAGGACAGAATAATAGAATCTGATGGAAATTTATACTCACCAACATCTCAGTTACAAATGCGGCTGACGATTCTGGCACAAAAAACCCGACAACACGTTCTGGTTGCGTGGCGGCGGCATCTGGATTGTACGCTGCCATAGTCTGAAGGAAATGGAAAATTTTGAGAGTCAGTGAATGAAACACGTGAGGTAATGTTGGAAAATCGGCGAAAAATGCGAAAAATCGCGAGAGTGGAAATATTTAATTAGAACCAATGGGAAAGAAATGGCAAAACGGAGGAAGAGAGGGAGCCACGAAAATTATTATTTACGCTTTCATTCACCTAAGGGCTCCTCTGTATTCCCAAAGCCGTTCCCGTATAATGCCGTAATGGCTGTTGTGGTGGATGCCACCTCCTAATTAAGTGAGATGGGCAGGTAGGTGTCGGTGAGAAGGAGCGGGATTAGGCACAAGCCGGTACCTTTCTGTTTTCAAGGCCTCGAGCTTATACGGTCATTAGTGGTGAGTAGGGAGAGCAGATGGATATGGGTCATGAGCTCTTACTTCACAAAA</canonical>
            <polymorphic>CCACAGTTGGCAAATTCCTGGTGAACTGGAGCTGGATACGGCAAACCTGGATACTGTATCATCAAACGTGGCGCTGTTGCTCGGCCATTTGGCAATCCAGATGGCTGTCCGTACTTTCGTTCGAGCTCTTTGACCATATCGACCATCGAAATCCGATCAGCAGCATCACAAGAAAAGTTAGTCGATTTATCAGTGGTTTCGATTTTTCTACGCTTTGGGGCACTCGCTTCCTGTGGAACTTTTCTTTTGTTGGATGAAGAGCTCACTGTAGAATCCTGGCACTCGTCATCGGAAGAAGTCGTGTCCGAGTCATCATCGGTGTCTTCTGCTCTCTCCGAGTCGTTGGAGTTGGTATTTAGAACGATTCGAGACATTTCTCCAGCGTATACAGTCACTCCTGGAGTGTTGCTCAAAGCGAGCTCCTAGAAAATAGAAATTTAAGACTTGGAGGACAGAATAATAGAATCTGATGGAAATTTATACTCACCAACATCTCAGTKACAAATGCGGCTGACGATTCTGGCACAAAAAACCCGACAACACGTTCTGGTTGCGTGGCGGCGGCATCTGGATTGTACGCTGCCATAGTCTGAAGGAAATGGAAAATTTTGAGAGTCAGTGAATGAAACACGTGAGGTAATGTTGGAAAATCGGCGAAAAATGCGAAAAATCGCGAGAGTGGAAATATTTAATTAGAACCAATGGGAAAGAAATGGCAAAACGGAGGAAGAGAGGGAGCCACGAAAATTATTATTTACGCTTTCATTCACCTAAGGGCTCCTCTGTATTCCCAAAGCCGTTCCCGTATAATGCCGTAATGGCTGTTGTGGTGGATGCCACCTCCTAATTAAGTGAGATGGGCAGGTAGGTGTCGGTGAGAAGGAGCGGGATTAGGCACAAGCCGGTACCTTTCTGTTTTCAAGGCCTCGAGCTTATACGGTCATTAGTGGTGAGTAGGGAGAGCAGATGGATATGGGTCATGAGCTCTTACTTCACAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTAGAACGATTCGAGACATTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCCATTTCCTTCAGACTAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ATTTAGAACGATTCGAGACATTTCTCCAGCGTATACAGTCACTCCTGGAGTGTTGCTCAAAGCGAGCTCCTAGAAAATAGAAATTTAAGACTTGGAGGACAGAATAATAGAATCTGATGGAAATTTATACTCACCAACATCTCAGTTACAAATGCGGCTGACGATTCTGGCACAAAAAACCCGACAACACGTTCTGGTTGCGTGGCGGCGGCATCTGGATTGTACGCTGCCATAGTCTGAAGGAAATGGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATTTAGAACGATTCGAGACATTTCTCCAGCGTATACAGTCACTCCTGGAGTGTTGCTCAAAGCGAGCTCCTAGAAAATAGAAATTTAAGACTTGGAGGACAGAATAATAGAATCTGATGGAAATTTATACTCACCAACATCTCAGTKACAAATGCGGCTGACGATTCTGGCACAAAAAACCCGACAACACGTTCTGGTTGCGTGGCGGCGGCATCTGGATTGTACGCTGCCATAGTCTGAAGGAAATGGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14837</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>228658</contig_pos>
        <strand>+</strand>
        <context>GGTTTTCAAT[A/G]AAGTTGAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTCGACTGAACAAGTTTTCTTGAGATTTCTTGGGATTATGGTTTTCAAT</left_flank>
        <right_flank>AAGTTGAAGAATGGTTAGTACTTTTTAAACAATCGACAATGAAAGAAAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTATTGTTGTTCAAAAAAATGGAGTTGGAGAGTTTTTCGCAGTCTGTTTACGGTAGGTACCTCGAAGCAGCAAGCCCAAACAGCACATATTCGGTGGAGACGCAGAGAAATTTTTTGTTCAACTGTCTGCGTCTCAACTCTATTTTTTTCGGAAAACAATAATATTGCCCTGACAAATGACTAATGGTTAAATGTGTGTCAGTTTCACGGGATACGAAACGTAAGATTTAGAATTTTAGAATTATGCGACAAGACTAGAGCTGAAGAACTTTGTTTGACATAACAAATTGTGAGCCGTGGAATAATTTTTCCTCAGCCAAACCAGAGCAAGAATACAATAATTTGAAGCCGAAATATTCTCATTAGTTATTCTCTTAGGATTTTTTGATGCGAAAAAGAATATTACGAAAAATGATAATTTCGTCAATATTCGATCTAAAGAATAAACCTCGACTGAACAAGTTTTCTTGAGATTTCTTGGGATTATGGTTTTCAATGAAGTTGAAGAATGGTTAGTACTTTTTAAACAATCGACAATGAAAGAAAACAACGAAATTTTCATTCAATTTAGCAACGGGGATCAATTCAACAAGGAAAAATGATAAAGTGGTAATACAACAACCAGCATAAAATGATAATCATTTCAGAAGAGTATCCTAACACAAGAGATCACATTTCAATATTAACACATCCGAATAAGTATTCAATGAACATCAAATCATCATGGAAACAGTACTTGTCATCCGTGTTCTCTAATTTTAAGCTCTCGTTGAACCAATATGCGTCGAAGTGAATAATGCTCGAGGAAATACAAATCAAAAACTTGTAGAAGTCGATGAGCTTGTTGCTTATCGGCATATCCGTTTTTTCGAGATGTTTCACACGACTGATCAGGAATTTCATTGTGTCCCCAGCGACCCAAGTGTCGTTGAGGCCATGTTGACGCTCCTCAAAGTAAGCATCCGTGACGAACTTCTCTCGCCGTCCCATTTCATGTC</canonical>
            <polymorphic>TATTATTGTTGTTCAAAAAAATGGAGTTGGAGAGTTTTTCGCAGTCTGTTTACGGTAGGTACCTCGAAGCAGCAAGCCCAAACAGCACATATTCGGTGGAGACGCAGAGAAATTTTTTGTTCAACTGTCTGCGTCTCAACTCTATTTTTTTCGGAAAACAATAATATTGCCCTGACAAATGACTAATGGTTAAATGTGTGTCAGTTTCACGGGATACGAAACGTAAGATTTAGAATTTTAGAATTATGCGACAAGACTAGAGCTGAAGAACTTTGTTTGACATAACAAATTGTGAGCCGTGGAATAATTTTTCCTCAGCCAAACCAGAGCAAGAATACAATAATTTGAAGCCGAAATATTCTCATTAGTTATTCTCTTAGGATTTTTTGATGCGAAAAAGAATATTACGAAAAATGATAATTTCGTCAATATTCGATCTAAAGAATAAACCTCGACTGAACAAGTTTTCTTGAGATTTCTTGGGATTATGGTTTTCAATRAAGTTGAAGAATGGTTAGTACTTTTTAAACAATCGACAATGAAAGAAAACAACGAAATTTTCATTCAATTTAGCAACGGGGATCAATTCAACAAGGAAAAATGATAAAGTGGTAATACAACAACCAGCATAAAATGATAATCATTTCAGAAGAGTATCCTAACACAAGAGATCACATTTCAATATTAACACATCCGAATAAGTATTCAATGAACATCAAATCATCATGGAAACAGTACTTGTCATCCGTGTTCTCTAATTTTAAGCTCTCGTTGAACCAATATGCGTCGAAGTGAATAATGCTCGAGGAAATACAAATCAAAAACTTGTAGAAGTCGATGAGCTTGTTGCTTATCGGCATATCCGTTTTTTCGAGATGTTTCACACGACTGATCAGGAATTTCATTGTGTCCCCAGCGACCCAAGTGTCGTTGAGGCCATGTTGACGCTCCTCAAAGTAAGCATCCGTGACGAACTTCTCTCGCCGTCCCATTTCATGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAAAGAATAAACCTCGACTGA</pcr_primer_p1>
		<pcr_primer_p2>ATTGAAATGTGATCTCTTGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTAAAGAATAAACCTCGACTGAACAAGTTTTCTTGAGATTTCTTGGGATTATGGTTTTCAATGAAGTTGAAGAATGGTTAGTACTTTTTAAACAATCGACAATGAAAGAAAACAACGAAATTTTCATTCAATTTAGCAACGGGGATCAATTCAACAAGGAAAAATGATAAAGTGGTAATACAACAACCAGCATAAAATGATAATCATTTCAGAAGAGTATCCTAACACAAGAGATCACATTTCAAT</canonical_amplicon>
		<polymorphic_amplicon>TCTAAAGAATAAACCTCGACTGAACAAGTTTTCTTGAGATTTCTTGGGATTATGGTTTTCAATRAAGTTGAAGAATGGTTAGTACTTTTTAAACAATCGACAATGAAAGAAAACAACGAAATTTTCATTCAATTTAGCAACGGGGATCAATTCAACAAGGAAAAATGATAAAGTGGTAATACAACAACCAGCATAAAATGATAATCATTTCAGAAGAGTATCCTAACACAAGAGATCACATTTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14838</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>230354</contig_pos>
        <strand>+</strand>
        <context>TTCAGGAGAA[A/G]TGGATTGTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGTTACCTCTGATTCCTTGTCGTGGATATCAGAGCGCTTTTCAGGAGAA</left_flank>
        <right_flank>TGGATTGTTGCTCCGTTGGCATCTTCGTTTCAGAACTGGAAAGTTTCGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGTTCTTGTTGCTGCACTTTGCTCGTGCTCTGTTGATCTTGACTCTTGCTCGCCTTTTGCCTGAAATTACAAACAGTTACGCAGTTTCTAGAAAAAATCAAAACTACTTTTTCTGCTTCTTCTTCGACTCTCGTGGTTTTGCAGCTTGTGACGACGCAAATGCTTTCTGATGGCCTGGATTGCTTGGCTTTCTCTGTACAGTTGTCTTGAGAGCGACATGAGGGAGTTCTTCGGCTGGAGCCAGCACATCGTACTGAACAACTTTCTCTTCGGCTTCTGACTCAGCAATTTCGTCTTCTCTGAAATTTTGGGGAGTTAAAAAAATGGTAAGAAATATATGAACTCACGAATCCTGATCCTCTTCTTGACTCTCTTGGATCCATTTTTTATAGATTTGGTTGCGATTCACCCATTTGGAGTAATCAACCACCTTGGTTACTGGAGCTGGTGTTACCTCTGATTCCTTGTCGTGGATATCAGAGCGCTTTTCAGGAGAAATGGATTGTTGCTCCGTTGGCATCTTCGTTTCAGAACTGGAAAGTTTCGAGTTGACGTCAGTCTCACTTGGCAATGGCTGGCTCTCATTTTCAGGAGGAGCTGAATCTCCCTTCGCTGGCATCTTATTTTCAGAAAGTTTGGAGTTGGCGACATATCCATTTGGCAATGACTGGTATTCATTTTGATGGATCAACTCCTCGACTTCGGGTTCGGCGACAACATTGACATTTCCATCGTCCAGAGCTACGCGATCCAAAGCTTTGGCAACTGTTGGAACGTCAGCAACTTCAGGGATTGAAATGGACTCAACAGACGGACAGTCATTGTTCTGGATGATGTTTTCTTTATCCTCGTCATCCTCTGCGTCTCCCATCTCCTCCACATCCTCATCTCTCGACTTCTGGGTAGTTTTGGCTTGAATTCGACGAGAAGACTTTCTCATGACGTTTCTCGCGCCGAACTTGTATTTTGCAGAAACAACAATCACTCGACGGGACTTC</canonical>
            <polymorphic>CCAGTTCTTGTTGCTGCACTTTGCTCGTGCTCTGTTGATCTTGACTCTTGCTCGCCTTTTGCCTGAAATTACAAACAGTTACGCAGTTTCTAGAAAAAATCAAAACTACTTTTTCTGCTTCTTCTTCGACTCTCGTGGTTTTGCAGCTTGTGACGACGCAAATGCTTTCTGATGGCCTGGATTGCTTGGCTTTCTCTGTACAGTTGTCTTGAGAGCGACATGAGGGAGTTCTTCGGCTGGAGCCAGCACATCGTACTGAACAACTTTCTCTTCGGCTTCTGACTCAGCAATTTCGTCTTCTCTGAAATTTTGGGGAGTTAAAAAAATGGTAAGAAATATATGAACTCACGAATCCTGATCCTCTTCTTGACTCTCTTGGATCCATTTTTTATAGATTTGGTTGCGATTCACCCATTTGGAGTAATCAACCACCTTGGTTACTGGAGCTGGTGTTACCTCTGATTCCTTGTCGTGGATATCAGAGCGCTTTTCAGGAGAARTGGATTGTTGCTCCGTTGGCATCTTCGTTTCAGAACTGGAAAGTTTCGAGTTGACGTCAGTCTCACTTGGCAATGGCTGGCTCTCATTTTCAGGAGGAGCTGAATCTCCCTTCGCTGGCATCTTATTTTCAGAAAGTTTGGAGTTGGCGACATATCCATTTGGCAATGACTGGTATTCATTTTGATGGATCAACTCCTCGACTTCGGGTTCGGCGACAACATTGACATTTCCATCGTCCAGAGCTACGCGATCCAAAGCTTTGGCAACTGTTGGAACGTCAGCAACTTCAGGGATTGAAATGGACTCAACAGACGGACAGTCATTGTTCTGGATGATGTTTTCTTTATCCTCGTCATCCTCTGCGTCTCCCATCTCCTCCACATCCTCATCTCTCGACTTCTGGGTAGTTTTGGCTTGAATTCGACGAGAAGACTTTCTCATGACGTTTCTCGCGCCGAACTTGTATTTTGCAGAAACAACAATCACTCGACGGGACTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTGGTGTTACCTCTGATTC</pcr_primer_p1>
		<pcr_primer_p2>AGTTGATCCATCAAAATGAATAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGCTGGTGTTACCTCTGATTCCTTGTCGTGGATATCAGAGCGCTTTTCAGGAGAAATGGATTGTTGCTCCGTTGGCATCTTCGTTTCAGAACTGGAAAGTTTCGAGTTGACGTCAGTCTCACTTGGCAATGGCTGGCTCTCATTTTCAGGAGGAGCTGAATCTCCCTTCGCTGGCATCTTATTTTCAGAAAGTTTGGAGTTGGCGACATATCCATTTGGCAATGACTGGTATTCATTTTGATGGATCAACT</canonical_amplicon>
		<polymorphic_amplicon>AGCTGGTGTTACCTCTGATTCCTTGTCGTGGATATCAGAGCGCTTTTCAGGAGAARTGGATTGTTGCTCCGTTGGCATCTTCGTTTCAGAACTGGAAAGTTTCGAGTTGACGTCAGTCTCACTTGGCAATGGCTGGCTCTCATTTTCAGGAGGAGCTGAATCTCCCTTCGCTGGCATCTTATTTTCAGAAAGTTTGGAGTTGGCGACATATCCATTTGGCAATGACTGGTATTCATTTTGATGGATCAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14839</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>230176</contig_pos>
        <strand>+</strand>
        <context>GGGGAGTTAA[A/C]AAAATGGTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCGGCTTCTGACTCAGCAATTTCGTCTTCTCTGAAATTTTGGGGAGTTAA</left_flank>
        <right_flank>AAAATGGTAAGAAATATATGAACTCACGAATCCTGATCCTCTTCTTGACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTTTGGTTTATATTGATTTCACAGCTGTTTTCAACGAGTTTACCTTTTTTGAATGCCCAGGCGATAATTCTGAAGCTGTGAATATAACGCCCGTATTCATTGATAATCTTTTTCATCTCGTCATAATCTTTCTTTTCTAGCTCAAACCAGTCCTCCTCGACTTTCTCCCCGATATCCAGTTCTTGTTGCTGCACTTTGCTCGTGCTCTGTTGATCTTGACTCTTGCTCGCCTTTTGCCTGAAATTACAAACAGTTACGCAGTTTCTAGAAAAAATCAAAACTACTTTTTCTGCTTCTTCTTCGACTCTCGTGGTTTTGCAGCTTGTGACGACGCAAATGCTTTCTGATGGCCTGGATTGCTTGGCTTTCTCTGTACAGTTGTCTTGAGAGCGACATGAGGGAGTTCTTCGGCTGGAGCCAGCACATCGTACTGAACAACTTTCTCTTCGGCTTCTGACTCAGCAATTTCGTCTTCTCTGAAATTTTGGGGAGTTAAAAAAATGGTAAGAAATATATGAACTCACGAATCCTGATCCTCTTCTTGACTCTCTTGGATCCATTTTTTATAGATTTGGTTGCGATTCACCCATTTGGAGTAATCAACCACCTTGGTTACTGGAGCTGGTGTTACCTCTGATTCCTTGTCGTGGATATCAGAGCGCTTTTCAGGAGAAATGGATTGTTGCTCCGTTGGCATCTTCGTTTCAGAACTGGAAAGTTTCGAGTTGACGTCAGTCTCACTTGGCAATGGCTGGCTCTCATTTTCAGGAGGAGCTGAATCTCCCTTCGCTGGCATCTTATTTTCAGAAAGTTTGGAGTTGGCGACATATCCATTTGGCAATGACTGGTATTCATTTTGATGGATCAACTCCTCGACTTCGGGTTCGGCGACAACATTGACATTTCCATCGTCCAGAGCTACGCGATCCAAAGCTTTGGCAACTGTTGGAACGTCAGCAACTTCAGGGATTGAAATGGACTCAACAGACGGACAGTC</canonical>
            <polymorphic>CAATTTTGGTTTATATTGATTTCACAGCTGTTTTCAACGAGTTTACCTTTTTTGAATGCCCAGGCGATAATTCTGAAGCTGTGAATATAACGCCCGTATTCATTGATAATCTTTTTCATCTCGTCATAATCTTTCTTTTCTAGCTCAAACCAGTCCTCCTCGACTTTCTCCCCGATATCCAGTTCTTGTTGCTGCACTTTGCTCGTGCTCTGTTGATCTTGACTCTTGCTCGCCTTTTGCCTGAAATTACAAACAGTTACGCAGTTTCTAGAAAAAATCAAAACTACTTTTTCTGCTTCTTCTTCGACTCTCGTGGTTTTGCAGCTTGTGACGACGCAAATGCTTTCTGATGGCCTGGATTGCTTGGCTTTCTCTGTACAGTTGTCTTGAGAGCGACATGAGGGAGTTCTTCGGCTGGAGCCAGCACATCGTACTGAACAACTTTCTCTTCGGCTTCTGACTCAGCAATTTCGTCTTCTCTGAAATTTTGGGGAGTTAAMAAAATGGTAAGAAATATATGAACTCACGAATCCTGATCCTCTTCTTGACTCTCTTGGATCCATTTTTTATAGATTTGGTTGCGATTCACCCATTTGGAGTAATCAACCACCTTGGTTACTGGAGCTGGTGTTACCTCTGATTCCTTGTCGTGGATATCAGAGCGCTTTTCAGGAGAAATGGATTGTTGCTCCGTTGGCATCTTCGTTTCAGAACTGGAAAGTTTCGAGTTGACGTCAGTCTCACTTGGCAATGGCTGGCTCTCATTTTCAGGAGGAGCTGAATCTCCCTTCGCTGGCATCTTATTTTCAGAAAGTTTGGAGTTGGCGACATATCCATTTGGCAATGACTGGTATTCATTTTGATGGATCAACTCCTCGACTTCGGGTTCGGCGACAACATTGACATTTCCATCGTCCAGAGCTACGCGATCCAAAGCTTTGGCAACTGTTGGAACGTCAGCAACTTCAGGGATTGAAATGGACTCAACAGACGGACAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTGTACAGTTGTCTTGAGAGC</pcr_primer_p1>
		<pcr_primer_p2>GTAACCAAGGTGGTTGATTACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTCTGTACAGTTGTCTTGAGAGCGACATGAGGGAGTTCTTCGGCTGGAGCCAGCACATCGTACTGAACAACTTTCTCTTCGGCTTCTGACTCAGCAATTTCGTCTTCTCTGAAATTTTGGGGAGTTAAAAAAATGGTAAGAAATATATGAACTCACGAATCCTGATCCTCTTCTTGACTCTCTTGGATCCATTTTTTATAGATTTGGTTGCGATTCACCCATTTGGAGTAATCAACCACCTTGGTTAC</canonical_amplicon>
		<polymorphic_amplicon>CTCTGTACAGTTGTCTTGAGAGCGACATGAGGGAGTTCTTCGGCTGGAGCCAGCACATCGTACTGAACAACTTTCTCTTCGGCTTCTGACTCAGCAATTTCGTCTTCTCTGAAATTTTGGGGAGTTAAMAAAATGGTAAGAAATATATGAACTCACGAATCCTGATCCTCTTCTTGACTCTCTTGGATCCATTTTTTATAGATTTGGTTGCGATTCACCCATTTGGAGTAATCAACCACCTTGGTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14840</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>236333</contig_pos>
        <strand>+</strand>
        <context>AAAGAAAGCA[C/T]GGTTAGCCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTTTTACCTCAGGATTTCAATTCACTGGCTTTCATACCAAAGAAAGCA</left_flank>
        <right_flank>GGTTAGCCTCTTGTCGTCAATATTACTGAGAAACTTTAGAAGTTTTGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAGACGCGTTATCCATTGCGCCACGCGGCCAGACACAATTCTACGTAGTGTGGGTGCTAGACAATTCAAAAAGAGGTGCTTTGTTCTCCCTCATCTCTCCTCTTCCTATTCCTAGTTGGAAAATAAGGCCATCTGAAAATAAGGCCATCCATCTGAATTCTGGCAGAGAGTGATGTAGGTATTACGGAAAATTAAGAGACCGTGCAGAGTACTTTGATAGTGTGTTGTGCAACAGGAGAAGATGACTATGGATGTTTGGACTAACTAAGAGTGACCAATTCTTATGAAGTAGATAGAACAAAAATGATAATATATGATACGATACCACAAAGATTTTCAGATATCCTGCATTGAATAGAGACACATGAAAAGATGAGATTCATAATTTTACTTTAATAAAAATAAATCTTAAGCGGAAAAATGTTTGAGAAAATTGTTTCTGATTTGAGATTTTTACCTCAGGATTTCAATTCACTGGCTTTCATACCAAAGAAAGCACGGTTAGCCTCTTGTCGTCAATATTACTGAGAAACTTTAGAAGTTTTGAATTTTTCGCCCGAGTCCGATGAATATTCAAGAGGCACCCAAAATAAAATACCAAATATGTTTTCTAGCCGTCCGAAAATTTATTGTTGTAAAATTGCAATTCAACTGCATAATTTTTCAAACTGTCGAACGTCTAGACCTGAAAAAAAACAGGAATTTCAAATCTACATCTTTCTGACTATTGAATTCTGTTGTTTTCCCTGCAGCCATTTTTCTATAATCTCTCATTAGTACTCATTTTTCCCAATTATATTTTTCTTTGGCCAAACGGATTCCCTACTATCTCCCAAATGTCTCTCTATGTGTAGGCCTTCTGCTGAGACGATTGAATTGATTGTCACCTGCCCAGCCTTTTTTTATCGCCCACCAAGAGATGGGTCTCTGTTACTTGTGTTAGCAACAAGTAACAGAGAAACGCATTCAAAAATGGAATATTTCTAGGAAAAATATAAC</canonical>
            <polymorphic>GCAGACGCGTTATCCATTGCGCCACGCGGCCAGACACAATTCTACGTAGTGTGGGTGCTAGACAATTCAAAAAGAGGTGCTTTGTTCTCCCTCATCTCTCCTCTTCCTATTCCTAGTTGGAAAATAAGGCCATCTGAAAATAAGGCCATCCATCTGAATTCTGGCAGAGAGTGATGTAGGTATTACGGAAAATTAAGAGACCGTGCAGAGTACTTTGATAGTGTGTTGTGCAACAGGAGAAGATGACTATGGATGTTTGGACTAACTAAGAGTGACCAATTCTTATGAAGTAGATAGAACAAAAATGATAATATATGATACGATACCACAAAGATTTTCAGATATCCTGCATTGAATAGAGACACATGAAAAGATGAGATTCATAATTTTACTTTAATAAAAATAAATCTTAAGCGGAAAAATGTTTGAGAAAATTGTTTCTGATTTGAGATTTTTACCTCAGGATTTCAATTCACTGGCTTTCATACCAAAGAAAGCAYGGTTAGCCTCTTGTCGTCAATATTACTGAGAAACTTTAGAAGTTTTGAATTTTTCGCCCGAGTCCGATGAATATTCAAGAGGCACCCAAAATAAAATACCAAATATGTTTTCTAGCCGTCCGAAAATTTATTGTTGTAAAATTGCAATTCAACTGCATAATTTTTCAAACTGTCGAACGTCTAGACCTGAAAAAAAACAGGAATTTCAAATCTACATCTTTCTGACTATTGAATTCTGTTGTTTTCCCTGCAGCCATTTTTCTATAATCTCTCATTAGTACTCATTTTTCCCAATTATATTTTTCTTTGGCCAAACGGATTCCCTACTATCTCCCAAATGTCTCTCTATGTGTAGGCCTTCTGCTGAGACGATTGAATTGATTGTCACCTGCCCAGCCTTTTTTTATCGCCCACCAAGAGATGGGTCTCTGTTACTTGTGTTAGCAACAAGTAACAGAGAAACGCATTCAAAAATGGAATATTTCTAGGAAAAATATAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>329 299 202 170</canonical_bands>
                <polymorphic_bands>469 329 202</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>268 111 94 85 60 54 44 36 35 32 27 26 24 24 22 18 15 12 5 4 2 2</canonical_bands>
                <polymorphic_bands>268 111 109 94 60 54 44 36 35 32 27 26 24 22 18 15 12 5 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTGATTTGAGATTTTTACCTC</pcr_primer_p1>
		<pcr_primer_p2>AGGTCTAGACGTTCGACAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTGATTTGAGATTTTTACCTCAGGATTTCAATTCACTGGCTTTCATACCAAAGAAAGCACGGTTAGCCTCTTGTCGTCAATATTACTGAGAAACTTTAGAAGTTTTGAATTTTTCGCCCGAGTCCGATGAATATTCAAGAGGCACCCAAAATAAAATACCAAATATGTTTTCTAGCCGTCCGAAAATTTATTGTTGTAAAATTGCAATTCAACTGCATAATTTTTCAAACTGTCGAACGTCTAGACCT</canonical_amplicon>
		<polymorphic_amplicon>TTCTGATTTGAGATTTTTACCTCAGGATTTCAATTCACTGGCTTTCATACCAAAGAAAGCAYGGTTAGCCTCTTGTCGTCAATATTACTGAGAAACTTTAGAAGTTTTGAATTTTTCGCCCGAGTCCGATGAATATTCAAGAGGCACCCAAAATAAAATACCAAATATGTTTTCTAGCCGTCCGAAAATTTATTGTTGTAAAATTGCAATTCAACTGCATAATTTTTCAAACTGTCGAACGTCTAGACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14841</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>236412</contig_pos>
        <strand>+</strand>
        <context>GAATATTCAA[A/G]AGGCACCCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAACTTTAGAAGTTTTGAATTTTTCGCCCGAGTCCGATGAATATTCAA</left_flank>
        <right_flank>AGGCACCCAAAATAAAATACCAAATATGTTTTCTAGCCGTCCGAAAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTGTTCTCCCTCATCTCTCCTCTTCCTATTCCTAGTTGGAAAATAAGGCCATCTGAAAATAAGGCCATCCATCTGAATTCTGGCAGAGAGTGATGTAGGTATTACGGAAAATTAAGAGACCGTGCAGAGTACTTTGATAGTGTGTTGTGCAACAGGAGAAGATGACTATGGATGTTTGGACTAACTAAGAGTGACCAATTCTTATGAAGTAGATAGAACAAAAATGATAATATATGATACGATACCACAAAGATTTTCAGATATCCTGCATTGAATAGAGACACATGAAAAGATGAGATTCATAATTTTACTTTAATAAAAATAAATCTTAAGCGGAAAAATGTTTGAGAAAATTGTTTCTGATTTGAGATTTTTACCTCAGGATTTCAATTCACTGGCTTTCATACCAAAGAAAGCACGGTTAGCCTCTTGTCGTCAATATTACTGAGAAACTTTAGAAGTTTTGAATTTTTCGCCCGAGTCCGATGAATATTCAAGAGGCACCCAAAATAAAATACCAAATATGTTTTCTAGCCGTCCGAAAATTTATTGTTGTAAAATTGCAATTCAACTGCATAATTTTTCAAACTGTCGAACGTCTAGACCTGAAAAAAAACAGGAATTTCAAATCTACATCTTTCTGACTATTGAATTCTGTTGTTTTCCCTGCAGCCATTTTTCTATAATCTCTCATTAGTACTCATTTTTCCCAATTATATTTTTCTTTGGCCAAACGGATTCCCTACTATCTCCCAAATGTCTCTCTATGTGTAGGCCTTCTGCTGAGACGATTGAATTGATTGTCACCTGCCCAGCCTTTTTTTATCGCCCACCAAGAGATGGGTCTCTGTTACTTGTGTTAGCAACAAGTAACAGAGAAACGCATTCAAAAATGGAATATTTCTAGGAAAAATATAACAAATTTCGATCCTGGCGTCTCAAAAACAAAGTTAAAACATCAGGAAAATCTAGCGAAAATGATTTTTCTGGAAACTGTT</canonical>
            <polymorphic>CTTTGTTCTCCCTCATCTCTCCTCTTCCTATTCCTAGTTGGAAAATAAGGCCATCTGAAAATAAGGCCATCCATCTGAATTCTGGCAGAGAGTGATGTAGGTATTACGGAAAATTAAGAGACCGTGCAGAGTACTTTGATAGTGTGTTGTGCAACAGGAGAAGATGACTATGGATGTTTGGACTAACTAAGAGTGACCAATTCTTATGAAGTAGATAGAACAAAAATGATAATATATGATACGATACCACAAAGATTTTCAGATATCCTGCATTGAATAGAGACACATGAAAAGATGAGATTCATAATTTTACTTTAATAAAAATAAATCTTAAGCGGAAAAATGTTTGAGAAAATTGTTTCTGATTTGAGATTTTTACCTCAGGATTTCAATTCACTGGCTTTCATACCAAAGAAAGCACGGTTAGCCTCTTGTCGTCAATATTACTGAGAAACTTTAGAAGTTTTGAATTTTTCGCCCGAGTCCGATGAATATTCAARAGGCACCCAAAATAAAATACCAAATATGTTTTCTAGCCGTCCGAAAATTTATTGTTGTAAAATTGCAATTCAACTGCATAATTTTTCAAACTGTCGAACGTCTAGACCTGAAAAAAAACAGGAATTTCAAATCTACATCTTTCTGACTATTGAATTCTGTTGTTTTCCCTGCAGCCATTTTTCTATAATCTCTCATTAGTACTCATTTTTCCCAATTATATTTTTCTTTGGCCAAACGGATTCCCTACTATCTCCCAAATGTCTCTCTATGTGTAGGCCTTCTGCTGAGACGATTGAATTGATTGTCACCTGCCCAGCCTTTTTTTATCGCCCACCAAGAGATGGGTCTCTGTTACTTGTGTTAGCAACAAGTAACAGAGAAACGCATTCAAAAATGGAATATTTCTAGGAAAAATATAACAAATTTCGATCCTGGCGTCTCAAAAACAAAGTTAAAACATCAGGAAAATCTAGCGAAAATGATTTTTCTGGAAACTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>382 360 115 105 27 11</canonical_bands>
                <polymorphic_bands>382 360 220 27 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAATTCACTGGCTTTCATAC</pcr_primer_p1>
		<pcr_primer_p2>TGTAGATTTGAAATTCCTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCAATTCACTGGCTTTCATACCAAAGAAAGCACGGTTAGCCTCTTGTCGTCAATATTACTGAGAAACTTTAGAAGTTTTGAATTTTTCGCCCGAGTCCGATGAATATTCAAGAGGCACCCAAAATAAAATACCAAATATGTTTTCTAGCCGTCCGAAAATTTATTGTTGTAAAATTGCAATTCAACTGCATAATTTTTCAAACTGTCGAACGTCTAGACCTGAAAAAAAACAGGAATTTCAAATCTACA</canonical_amplicon>
		<polymorphic_amplicon>TCAATTCACTGGCTTTCATACCAAAGAAAGCACGGTTAGCCTCTTGTCGTCAATATTACTGAGAAACTTTAGAAGTTTTGAATTTTTCGCCCGAGTCCGATGAATATTCAARAGGCACCCAAAATAAAATACCAAATATGTTTTCTAGCCGTCCGAAAATTTATTGTTGTAAAATTGCAATTCAACTGCATAATTTTTCAAACTGTCGAACGTCTAGACCTGAAAAAAAACAGGAATTTCAAATCTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14842</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>237904</contig_pos>
        <strand>+</strand>
        <context>AAATCCAGTT[A/G]AAATTTGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGAATCCTGTTCCTATTGGGAACGAAAAACAGAAAATAAAAATCCAGTT</left_flank>
        <right_flank>AAATTTGAAGATTTGGTAAAATATAAAATTGCATTAAAACAGTATTTGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCAAATTACAGATCTTTTGGCAGTTCACAGCAATTATCACCATTTCTGCTTTAATTACTACCTTGTACTAATCTTTGGTAATTTTCCATCCATCACACATTTTGAACACCTCAATATATCTGTCATACATCTCGCGTGGGCATAAGAAAACTGGTCGTCGAATCAGTTTTCAAAGACACTTTTCAGAAGATATAACGTCTGATTCTGCTCCACAACATGTCGATTACGGTATCTCTATATCCTCTGTGTCTGGATGTTCTTTCGCTGTCTCCAGGCTTTTTTTATTAATGGACCAACAGCAATCGGGGGGTCTTGCGACATCTTCTCTTCAAACAAAAGATACGTAAGAATGTATGTTAGGTTGGGTAGATAGCCAGGAAAAAAAAACCGAGGTAAATTACTATTACCTGTTATGGTGTGGAAGATTTCCAGACAGATAAGAGATTGTATGAATCCTGTTCCTATTGGGAACGAAAAACAGAAAATAAAAATCCAGTTGAAATTTGAAGATTTGGTAAAATATAAAATTGCATTAAAACAGTATTTGGAATTCAAGATCGATAAGAACGATTTTTTCCTTTGTGGAATATAACGAAATTATATGCTTACCAGTACTCTAATAATACAACTTTTATTTATTGCAAAAATTTCCAATTATTAAAAATTTTGAACATTATGTTTCTTTTTTTTTCTTTTTTTCAAACTATTTGCAATAGATTTTCAAATTTCATTCAATTATCCCAAAAATTTTCAATTTCACCAAAACGTTATTTGGAATTTTCAGAACATGTCGACTCGGACCTGCAACACTGTGAACTTGAATTTCTACAAATTTTCGTTTCACATGTCATTTTCCCATGGTTCTCCTAAATTTTTCGTATCACAACATATGCCTGATTCATTTTTCCATAAAACAATCCCAGATGACGGTCCGAGTATGCTACTCTGTAAATCCAAGTGCTGTAGATATTGGTCCTTTTCGAATCTAGGACAATTGAC</canonical>
            <polymorphic>GCCAAATTACAGATCTTTTGGCAGTTCACAGCAATTATCACCATTTCTGCTTTAATTACTACCTTGTACTAATCTTTGGTAATTTTCCATCCATCACACATTTTGAACACCTCAATATATCTGTCATACATCTCGCGTGGGCATAAGAAAACTGGTCGTCGAATCAGTTTTCAAAGACACTTTTCAGAAGATATAACGTCTGATTCTGCTCCACAACATGTCGATTACGGTATCTCTATATCCTCTGTGTCTGGATGTTCTTTCGCTGTCTCCAGGCTTTTTTTATTAATGGACCAACAGCAATCGGGGGGTCTTGCGACATCTTCTCTTCAAACAAAAGATACGTAAGAATGTATGTTAGGTTGGGTAGATAGCCAGGAAAAAAAAACCGAGGTAAATTACTATTACCTGTTATGGTGTGGAAGATTTCCAGACAGATAAGAGATTGTATGAATCCTGTTCCTATTGGGAACGAAAAACAGAAAATAAAAATCCAGTTRAAATTTGAAGATTTGGTAAAATATAAAATTGCATTAAAACAGTATTTGGAATTCAAGATCGATAAGAACGATTTTTTCCTTTGTGGAATATAACGAAATTATATGCTTACCAGTACTCTAATAATACAACTTTTATTTATTGCAAAAATTTCCAATTATTAAAAATTTTGAACATTATGTTTCTTTTTTTTTCTTTTTTTCAAACTATTTGCAATAGATTTTCAAATTTCATTCAATTATCCCAAAAATTTTCAATTTCACCAAAACGTTATTTGGAATTTTCAGAACATGTCGACTCGGACCTGCAACACTGTGAACTTGAATTTCTACAAATTTTCGTTTCACATGTCATTTTCCCATGGTTCTCCTAAATTTTTCGTATCACAACATATGCCTGATTCATTTTTCCATAAAACAATCCCAGATGACGGTCCGAGTATGCTACTCTGTAAATCCAAGTGCTGTAGATATTGGTCCTTTTCGAATCTAGGACAATTGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATGTATGTTAGGTTGGGTAGA</pcr_primer_p1>
		<pcr_primer_p2>CGTTATATTCCACAAAGGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAATGTATGTTAGGTTGGGTAGATAGCCAGGAAAAAAAAACCGAGGTAAATTACTATTACCTGTTATGGTGTGGAAGATTTCCAGACAGATAAGAGATTGTATGAATCCTGTTCCTATTGGGAACGAAAAACAGAAAATAAAAATCCAGTTGAAATTTGAAGATTTGGTAAAATATAAAATTGCATTAAAACAGTATTTGGAATTCAAGATCGATAAGAACGATTTTTTCCTTTGTGGAATATAACG</canonical_amplicon>
		<polymorphic_amplicon>GAATGTATGTTAGGTTGGGTAGATAGCCAGGAAAAAAAAACCGAGGTAAATTACTATTACCTGTTATGGTGTGGAAGATTTCCAGACAGATAAGAGATTGTATGAATCCTGTTCCTATTGGGAACGAAAAACAGAAAATAAAAATCCAGTTRAAATTTGAAGATTTGGTAAAATATAAAATTGCATTAAAACAGTATTTGGAATTCAAGATCGATAAGAACGATTTTTTCCTTTGTGGAATATAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14843</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>237828</contig_pos>
        <strand></strand>
        <context>ATGGTGTGGA[A/T]GATTTCCAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCCAGGAAAAAAAAACCGAGGTAAATTACTATTACCTGTTATGGTGTGGA</left_flank>
        <right_flank>GATTTCCAGACAGATAAGAGATTGTATGAATCCTGTTCCTATTGGGAACG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGCAATAATTTTTTGAAATTCGATTGAAGATTTTCTTTTTTCCGAATTCATCAAATTGTGTGAATTTTTCAAAAGCCAAATTACAGATCTTTTGGCAGTTCACAGCAATTATCACCATTTCTGCTTTAATTACTACCTTGTACTAATCTTTGGTAATTTTCCATCCATCACACATTTTGAACACCTCAATATATCTGTCATACATCTCGCGTGGGCATAAGAAAACTGGTCGTCGAATCAGTTTTCAAAGACACTTTTCAGAAGATATAACGTCTGATTCTGCTCCACAACATGTCGATTACGGTATCTCTATATCCTCTGTGTCTGGATGTTCTTTCGCTGTCTCCAGGCTTTTTTTATTAATGGACCAACAGCAATCGGGGGGTCTTGCGACATCTTCTCTTCAAACAAAAGATACGTAAGAATGTATGTTAGGTTGGGTAGATAGCCAGGAAAAAAAAACCGAGGTAAATTACTATTACCTGTTATGGTGTGGAAGATTTCCAGACAGATAAGAGATTGTATGAATCCTGTTCCTATTGGGAACGAAAAACAGAAAATAAAAATCCAGTTGAAATTTGAAGATTTGGTAAAATATAAAATTGCATTAAAACAGTATTTGGAATTCAAGATCGATAAGAACGATTTTTTCCTTTGTGGAATATAACGAAATTATATGCTTACCAGTACTCTAATAATACAACTTTTATTTATTGCAAAAATTTCCAATTATTAAAAATTTTGAACATTATGTTTCTTTTTTTTTCTTTTTTTCAAACTATTTGCAATAGATTTTCAAATTTCATTCAATTATCCCAAAAATTTTCAATTTCACCAAAACGTTATTTGGAATTTTCAGAACATGTCGACTCGGACCTGCAACACTGTGAACTTGAATTTCTACAAATTTTCGTTTCACATGTCATTTTCCCATGGTTCTCCTAAATTTTTCGTATCACAACATATGCCTGATTCATTTTTCCATAAAACAATCCCAG</canonical>
            <polymorphic>GGAGCAATAATTTTTTGAAATTCGATTGAAGATTTTCTTTTTTCCGAATTCATCAAATTGTGTGAATTTTTCAAAAGCCAAATTACAGATCTTTTGGCAGTTCACAGCAATTATCACCATTTCTGCTTTAATTACTACCTTGTACTAATCTTTGGTAATTTTCCATCCATCACACATTTTGAACACCTCAATATATCTGTCATACATCTCGCGTGGGCATAAGAAAACTGGTCGTCGAATCAGTTTTCAAAGACACTTTTCAGAAGATATAACGTCTGATTCTGCTCCACAACATGTCGATTACGGTATCTCTATATCCTCTGTGTCTGGATGTTCTTTCGCTGTCTCCAGGCTTTTTTTATTAATGGACCAACAGCAATCGGGGGGTCTTGCGACATCTTCTCTTCAAACAAAAGATACGTAAGAATGTATGTTAGGTTGGGTAGATAGCCAGGAAAAAAAAACCGAGGTAAATTACTATTACCTGTTATGGTGTGGAWGATTTCCAGACAGATAAGAGATTGTATGAATCCTGTTCCTATTGGGAACGAAAAACAGAAAATAAAAATCCAGTTGAAATTTGAAGATTTGGTAAAATATAAAATTGCATTAAAACAGTATTTGGAATTCAAGATCGATAAGAACGATTTTTTCCTTTGTGGAATATAACGAAATTATATGCTTACCAGTACTCTAATAATACAACTTTTATTTATTGCAAAAATTTCCAATTATTAAAAATTTTGAACATTATGTTTCTTTTTTTTTCTTTTTTTCAAACTATTTGCAATAGATTTTCAAATTTCATTCAATTATCCCAAAAATTTTCAATTTCACCAAAACGTTATTTGGAATTTTCAGAACATGTCGACTCGGACCTGCAACACTGTGAACTTGAATTTCTACAAATTTTCGTTTCACATGTCATTTTCCCATGGTTCTCCTAAATTTTTCGTATCACAACATATGCCTGATTCATTTTTCCATAAAACAATCCCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATGTATGTTAGGTTGGGTAGA</pcr_primer_p1>
		<pcr_primer_p2>CGTTATATTCCACAAAGGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAATGTATGTTAGGTTGGGTAGATAGCCAGGAAAAAAAAACCGAGGTAAATTACTATTACCTGTTATGGTGTGGAAGATTTCCAGACAGATAAGAGATTGTATGAATCCTGTTCCTATTGGGAACGAAAAACAGAAAATAAAAATCCAGTTGAAATTTGAAGATTTGGTAAAATATAAAATTGCATTAAAACAGTATTTGGAATTCAAGATCGATAAGAACGATTTTTTCCTTTGTGGAATATAACG</canonical_amplicon>
		<polymorphic_amplicon>GAATGTATGTTAGGTTGGGTAGATAGCCAGGAAAAAAAAACCGAGGTAAATTACTATTACCTGTTATGGTGTGGAWGATTTCCAGACAGATAAGAGATTGTATGAATCCTGTTCCTATTGGGAACGAAAAACAGAAAATAAAAATCCAGTTGAAATTTGAAGATTTGGTAAAATATAAAATTGCATTAAAACAGTATTTGGAATTCAAGATCGATAAGAACGATTTTTTCCTTTGTGGAATATAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14844</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>237682</contig_pos>
        <strand>+</strand>
        <context>GTCTCCAGGC[C/T]TTTTTTATTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGTATCTCTATATCCTCTGTGTCTGGATGTTCTTTCGCTGTCTCCAGGC</left_flank>
        <right_flank>TTTTTTATTAATGGACCAACAGCAATCGGGGGGTCTTGCGACATCTTCTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGAAATTGAAAATAAAATGAAATTTGCTGGGGACAAAAACTGTTGAACAATAAAACATGCATTAGAATCAGTTTAATTATTTCAATGTTCACCATACTGATGATTTTCGAAAAATTACGGTCCTGGAAAAAAATTGAGATATTTGGAGCAATAATTTTTTGAAATTCGATTGAAGATTTTCTTTTTTCCGAATTCATCAAATTGTGTGAATTTTTCAAAAGCCAAATTACAGATCTTTTGGCAGTTCACAGCAATTATCACCATTTCTGCTTTAATTACTACCTTGTACTAATCTTTGGTAATTTTCCATCCATCACACATTTTGAACACCTCAATATATCTGTCATACATCTCGCGTGGGCATAAGAAAACTGGTCGTCGAATCAGTTTTCAAAGACACTTTTCAGAAGATATAACGTCTGATTCTGCTCCACAACATGTCGATTACGGTATCTCTATATCCTCTGTGTCTGGATGTTCTTTCGCTGTCTCCAGGCTTTTTTTATTAATGGACCAACAGCAATCGGGGGGTCTTGCGACATCTTCTCTTCAAACAAAAGATACGTAAGAATGTATGTTAGGTTGGGTAGATAGCCAGGAAAAAAAAACCGAGGTAAATTACTATTACCTGTTATGGTGTGGAAGATTTCCAGACAGATAAGAGATTGTATGAATCCTGTTCCTATTGGGAACGAAAAACAGAAAATAAAAATCCAGTTGAAATTTGAAGATTTGGTAAAATATAAAATTGCATTAAAACAGTATTTGGAATTCAAGATCGATAAGAACGATTTTTTCCTTTGTGGAATATAACGAAATTATATGCTTACCAGTACTCTAATAATACAACTTTTATTTATTGCAAAAATTTCCAATTATTAAAAATTTTGAACATTATGTTTCTTTTTTTTTCTTTTTTTCAAACTATTTGCAATAGATTTTCAAATTTCATTCAATTATCCCAAAAATTTTCAATTTCACCAAAACGTTATTTGGAA</canonical>
            <polymorphic>TGAGAAATTGAAAATAAAATGAAATTTGCTGGGGACAAAAACTGTTGAACAATAAAACATGCATTAGAATCAGTTTAATTATTTCAATGTTCACCATACTGATGATTTTCGAAAAATTACGGTCCTGGAAAAAAATTGAGATATTTGGAGCAATAATTTTTTGAAATTCGATTGAAGATTTTCTTTTTTCCGAATTCATCAAATTGTGTGAATTTTTCAAAAGCCAAATTACAGATCTTTTGGCAGTTCACAGCAATTATCACCATTTCTGCTTTAATTACTACCTTGTACTAATCTTTGGTAATTTTCCATCCATCACACATTTTGAACACCTCAATATATCTGTCATACATCTCGCGTGGGCATAAGAAAACTGGTCGTCGAATCAGTTTTCAAAGACACTTTTCAGAAGATATAACGTCTGATTCTGCTCCACAACATGTCGATTACGGTATCTCTATATCCTCTGTGTCTGGATGTTCTTTCGCTGTCTCCAGGCYTTTTTTATTAATGGACCAACAGCAATCGGGGGGTCTTGCGACATCTTCTCTTCAAACAAAAGATACGTAAGAATGTATGTTAGGTTGGGTAGATAGCCAGGAAAAAAAAACCGAGGTAAATTACTATTACCTGTTATGGTGTGGAAGATTTCCAGACAGATAAGAGATTGTATGAATCCTGTTCCTATTGGGAACGAAAAACAGAAAATAAAAATCCAGTTGAAATTTGAAGATTTGGTAAAATATAAAATTGCATTAAAACAGTATTTGGAATTCAAGATCGATAAGAACGATTTTTTCCTTTGTGGAATATAACGAAATTATATGCTTACCAGTACTCTAATAATACAACTTTTATTTATTGCAAAAATTTCCAATTATTAAAAATTTTGAACATTATGTTTCTTTTTTTTTCTTTTTTTCAAACTATTTGCAATAGATTTTCAAATTTCATTCAATTATCCCAAAAATTTTCAATTTCACCAAAACGTTATTTGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>404 275 223 98</canonical_bands>
                <polymorphic_bands>404 373 223</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATGTCGATTACGGTATCTCTA</pcr_primer_p1>
		<pcr_primer_p2>TAGGAACAGGATTCATACAATCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATGTCGATTACGGTATCTCTATATCCTCTGTGTCTGGATGTTCTTTCGCTGTCTCCAGGCTTTTTTTATTAATGGACCAACAGCAATCGGGGGGTCTTGCGACATCTTCTCTTCAAACAAAAGATACGTAAGAATGTATGTTAGGTTGGGTAGATAGCCAGGAAAAAAAAACCGAGGTAAATTACTATTACCTGTTATGGTGTGGAAGATTTCCAGACAGATAAGAGATTGTATGAATCCTGTTCCTA</canonical_amplicon>
		<polymorphic_amplicon>ACATGTCGATTACGGTATCTCTATATCCTCTGTGTCTGGATGTTCTTTCGCTGTCTCCAGGCYTTTTTTATTAATGGACCAACAGCAATCGGGGGGTCTTGCGACATCTTCTCTTCAAACAAAAGATACGTAAGAATGTATGTTAGGTTGGGTAGATAGCCAGGAAAAAAAAACCGAGGTAAATTACTATTACCTGTTATGGTGTGGAAGATTTCCAGACAGATAAGAGATTGTATGAATCCTGTTCCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14845</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>237594</contig_pos>
        <strand>+</strand>
        <context>CTTTTCAGAA[G/T]ATATAACGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGCATAAGAAAACTGGTCGTCGAATCAGTTTTCAAAGACACTTTTCAGAA</left_flank>
        <right_flank>ATATAACGTCTGATTCTGCTCCACAACATGTCGATTACGGTATCTCTATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGATTTTAGCACGCCTGTCTTAAGGACTGCAGAGGTTGTGTGCACAAAAAGATGAAAACTTAATTACATTATTGGGATCTCAGTTTCTGAGAAATTGAAAATAAAATGAAATTTGCTGGGGACAAAAACTGTTGAACAATAAAACATGCATTAGAATCAGTTTAATTATTTCAATGTTCACCATACTGATGATTTTCGAAAAATTACGGTCCTGGAAAAAAATTGAGATATTTGGAGCAATAATTTTTTGAAATTCGATTGAAGATTTTCTTTTTTCCGAATTCATCAAATTGTGTGAATTTTTCAAAAGCCAAATTACAGATCTTTTGGCAGTTCACAGCAATTATCACCATTTCTGCTTTAATTACTACCTTGTACTAATCTTTGGTAATTTTCCATCCATCACACATTTTGAACACCTCAATATATCTGTCATACATCTCGCGTGGGCATAAGAAAACTGGTCGTCGAATCAGTTTTCAAAGACACTTTTCAGAAGATATAACGTCTGATTCTGCTCCACAACATGTCGATTACGGTATCTCTATATCCTCTGTGTCTGGATGTTCTTTCGCTGTCTCCAGGCTTTTTTTATTAATGGACCAACAGCAATCGGGGGGTCTTGCGACATCTTCTCTTCAAACAAAAGATACGTAAGAATGTATGTTAGGTTGGGTAGATAGCCAGGAAAAAAAAACCGAGGTAAATTACTATTACCTGTTATGGTGTGGAAGATTTCCAGACAGATAAGAGATTGTATGAATCCTGTTCCTATTGGGAACGAAAAACAGAAAATAAAAATCCAGTTGAAATTTGAAGATTTGGTAAAATATAAAATTGCATTAAAACAGTATTTGGAATTCAAGATCGATAAGAACGATTTTTTCCTTTGTGGAATATAACGAAATTATATGCTTACCAGTACTCTAATAATACAACTTTTATTTATTGCAAAAATTTCCAATTATTAAAAATTTTGAACATTATGTTTCTTTTTTT</canonical>
            <polymorphic>TAGATTTTAGCACGCCTGTCTTAAGGACTGCAGAGGTTGTGTGCACAAAAAGATGAAAACTTAATTACATTATTGGGATCTCAGTTTCTGAGAAATTGAAAATAAAATGAAATTTGCTGGGGACAAAAACTGTTGAACAATAAAACATGCATTAGAATCAGTTTAATTATTTCAATGTTCACCATACTGATGATTTTCGAAAAATTACGGTCCTGGAAAAAAATTGAGATATTTGGAGCAATAATTTTTTGAAATTCGATTGAAGATTTTCTTTTTTCCGAATTCATCAAATTGTGTGAATTTTTCAAAAGCCAAATTACAGATCTTTTGGCAGTTCACAGCAATTATCACCATTTCTGCTTTAATTACTACCTTGTACTAATCTTTGGTAATTTTCCATCCATCACACATTTTGAACACCTCAATATATCTGTCATACATCTCGCGTGGGCATAAGAAAACTGGTCGTCGAATCAGTTTTCAAAGACACTTTTCAGAAKATATAACGTCTGATTCTGCTCCACAACATGTCGATTACGGTATCTCTATATCCTCTGTGTCTGGATGTTCTTTCGCTGTCTCCAGGCTTTTTTTATTAATGGACCAACAGCAATCGGGGGGTCTTGCGACATCTTCTCTTCAAACAAAAGATACGTAAGAATGTATGTTAGGTTGGGTAGATAGCCAGGAAAAAAAAACCGAGGTAAATTACTATTACCTGTTATGGTGTGGAAGATTTCCAGACAGATAAGAGATTGTATGAATCCTGTTCCTATTGGGAACGAAAAACAGAAAATAAAAATCCAGTTGAAATTTGAAGATTTGGTAAAATATAAAATTGCATTAAAACAGTATTTGGAATTCAAGATCGATAAGAACGATTTTTTCCTTTGTGGAATATAACGAAATTATATGCTTACCAGTACTCTAATAATACAACTTTTATTTATTGCAAAAATTTCCAATTATTAAAAATTTTGAACATTATGTTTCTTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTACAGATCTTTTGGCAGTTC</pcr_primer_p1>
		<pcr_primer_p2>TCCAGACACAGAGGATATAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTACAGATCTTTTGGCAGTTCACAGCAATTATCACCATTTCTGCTTTAATTACTACCTTGTACTAATCTTTGGTAATTTTCCATCCATCACACATTTTGAACACCTCAATATATCTGTCATACATCTCGCGTGGGCATAAGAAAACTGGTCGTCGAATCAGTTTTCAAAGACACTTTTCAGAAGATATAACGTCTGATTCTGCTCCACAACATGTCGATTACGGTATCTCTATATCCTCTGTGTCTGGA</canonical_amplicon>
		<polymorphic_amplicon>ATTACAGATCTTTTGGCAGTTCACAGCAATTATCACCATTTCTGCTTTAATTACTACCTTGTACTAATCTTTGGTAATTTTCCATCCATCACACATTTTGAACACCTCAATATATCTGTCATACATCTCGCGTGGGCATAAGAAAACTGGTCGTCGAATCAGTTTTCAAAGACACTTTTCAGAAKATATAACGTCTGATTCTGCTCCACAACATGTCGATTACGGTATCTCTATATCCTCTGTGTCTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14846</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>237547</contig_pos>
        <strand>+</strand>
        <context>TCGCGTGGGC[A/T]TAAGAAAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCACACATTTTGAACACCTCAATATATCTGTCATACATCTCGCGTGGGC</left_flank>
        <right_flank>TAAGAAAACTGGTCGTCGAATCAGTTTTCAAAGACACTTTTCAGAAGATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTGTATCTTTGTATACATGACCCTCACACTCGACCTTATGGTAGTCTAGATTTTAGCACGCCTGTCTTAAGGACTGCAGAGGTTGTGTGCACAAAAAGATGAAAACTTAATTACATTATTGGGATCTCAGTTTCTGAGAAATTGAAAATAAAATGAAATTTGCTGGGGACAAAAACTGTTGAACAATAAAACATGCATTAGAATCAGTTTAATTATTTCAATGTTCACCATACTGATGATTTTCGAAAAATTACGGTCCTGGAAAAAAATTGAGATATTTGGAGCAATAATTTTTTGAAATTCGATTGAAGATTTTCTTTTTTCCGAATTCATCAAATTGTGTGAATTTTTCAAAAGCCAAATTACAGATCTTTTGGCAGTTCACAGCAATTATCACCATTTCTGCTTTAATTACTACCTTGTACTAATCTTTGGTAATTTTCCATCCATCACACATTTTGAACACCTCAATATATCTGTCATACATCTCGCGTGGGCATAAGAAAACTGGTCGTCGAATCAGTTTTCAAAGACACTTTTCAGAAGATATAACGTCTGATTCTGCTCCACAACATGTCGATTACGGTATCTCTATATCCTCTGTGTCTGGATGTTCTTTCGCTGTCTCCAGGCTTTTTTTATTAATGGACCAACAGCAATCGGGGGGTCTTGCGACATCTTCTCTTCAAACAAAAGATACGTAAGAATGTATGTTAGGTTGGGTAGATAGCCAGGAAAAAAAAACCGAGGTAAATTACTATTACCTGTTATGGTGTGGAAGATTTCCAGACAGATAAGAGATTGTATGAATCCTGTTCCTATTGGGAACGAAAAACAGAAAATAAAAATCCAGTTGAAATTTGAAGATTTGGTAAAATATAAAATTGCATTAAAACAGTATTTGGAATTCAAGATCGATAAGAACGATTTTTTCCTTTGTGGAATATAACGAAATTATATGCTTACCAGTACTCTAATAATACAACTTTTATTTATTGC</canonical>
            <polymorphic>GCTGTATCTTTGTATACATGACCCTCACACTCGACCTTATGGTAGTCTAGATTTTAGCACGCCTGTCTTAAGGACTGCAGAGGTTGTGTGCACAAAAAGATGAAAACTTAATTACATTATTGGGATCTCAGTTTCTGAGAAATTGAAAATAAAATGAAATTTGCTGGGGACAAAAACTGTTGAACAATAAAACATGCATTAGAATCAGTTTAATTATTTCAATGTTCACCATACTGATGATTTTCGAAAAATTACGGTCCTGGAAAAAAATTGAGATATTTGGAGCAATAATTTTTTGAAATTCGATTGAAGATTTTCTTTTTTCCGAATTCATCAAATTGTGTGAATTTTTCAAAAGCCAAATTACAGATCTTTTGGCAGTTCACAGCAATTATCACCATTTCTGCTTTAATTACTACCTTGTACTAATCTTTGGTAATTTTCCATCCATCACACATTTTGAACACCTCAATATATCTGTCATACATCTCGCGTGGGCWTAAGAAAACTGGTCGTCGAATCAGTTTTCAAAGACACTTTTCAGAAGATATAACGTCTGATTCTGCTCCACAACATGTCGATTACGGTATCTCTATATCCTCTGTGTCTGGATGTTCTTTCGCTGTCTCCAGGCTTTTTTTATTAATGGACCAACAGCAATCGGGGGGTCTTGCGACATCTTCTCTTCAAACAAAAGATACGTAAGAATGTATGTTAGGTTGGGTAGATAGCCAGGAAAAAAAAACCGAGGTAAATTACTATTACCTGTTATGGTGTGGAAGATTTCCAGACAGATAAGAGATTGTATGAATCCTGTTCCTATTGGGAACGAAAAACAGAAAATAAAAATCCAGTTGAAATTTGAAGATTTGGTAAAATATAAAATTGCATTAAAACAGTATTTGGAATTCAAGATCGATAAGAACGATTTTTTCCTTTGTGGAATATAACGAAATTATATGCTTACCAGTACTCTAATAATACAACTTTTATTTATTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTACAGATCTTTTGGCAGTTC</pcr_primer_p1>
		<pcr_primer_p2>TCCAGACACAGAGGATATAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTACAGATCTTTTGGCAGTTCACAGCAATTATCACCATTTCTGCTTTAATTACTACCTTGTACTAATCTTTGGTAATTTTCCATCCATCACACATTTTGAACACCTCAATATATCTGTCATACATCTCGCGTGGGCATAAGAAAACTGGTCGTCGAATCAGTTTTCAAAGACACTTTTCAGAAGATATAACGTCTGATTCTGCTCCACAACATGTCGATTACGGTATCTCTATATCCTCTGTGTCTGGA</canonical_amplicon>
		<polymorphic_amplicon>ATTACAGATCTTTTGGCAGTTCACAGCAATTATCACCATTTCTGCTTTAATTACTACCTTGTACTAATCTTTGGTAATTTTCCATCCATCACACATTTTGAACACCTCAATATATCTGTCATACATCTCGCGTGGGCWTAAGAAAACTGGTCGTCGAATCAGTTTTCAAAGACACTTTTCAGAAGATATAACGTCTGATTCTGCTCCACAACATGTCGATTACGGTATCTCTATATCCTCTGTGTCTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14847</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>237440</contig_pos>
        <strand>+</strand>
        <context>TCACAGCAAT[C/T]ATCACCATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGAATTTTTCAAAAGCCAAATTACAGATCTTTTGGCAGTTCACAGCAAT</left_flank>
        <right_flank>ATCACCATTTCTGCTTTAATTACTACCTTGTACTAATCTTTGGTAATTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTGGAAACGATTATTTGAAAACTCCTTTTTTTCGAATTTTCATTCAGATTTTCTCCTCTATTTCTGCAAAAGCGCTCTAATGCAAATGTGTGTGATGTAATGACGCTGTATCTTTGTATACATGACCCTCACACTCGACCTTATGGTAGTCTAGATTTTAGCACGCCTGTCTTAAGGACTGCAGAGGTTGTGTGCACAAAAAGATGAAAACTTAATTACATTATTGGGATCTCAGTTTCTGAGAAATTGAAAATAAAATGAAATTTGCTGGGGACAAAAACTGTTGAACAATAAAACATGCATTAGAATCAGTTTAATTATTTCAATGTTCACCATACTGATGATTTTCGAAAAATTACGGTCCTGGAAAAAAATTGAGATATTTGGAGCAATAATTTTTTGAAATTCGATTGAAGATTTTCTTTTTTCCGAATTCATCAAATTGTGTGAATTTTTCAAAAGCCAAATTACAGATCTTTTGGCAGTTCACAGCAATTATCACCATTTCTGCTTTAATTACTACCTTGTACTAATCTTTGGTAATTTTCCATCCATCACACATTTTGAACACCTCAATATATCTGTCATACATCTCGCGTGGGCATAAGAAAACTGGTCGTCGAATCAGTTTTCAAAGACACTTTTCAGAAGATATAACGTCTGATTCTGCTCCACAACATGTCGATTACGGTATCTCTATATCCTCTGTGTCTGGATGTTCTTTCGCTGTCTCCAGGCTTTTTTTATTAATGGACCAACAGCAATCGGGGGGTCTTGCGACATCTTCTCTTCAAACAAAAGATACGTAAGAATGTATGTTAGGTTGGGTAGATAGCCAGGAAAAAAAAACCGAGGTAAATTACTATTACCTGTTATGGTGTGGAAGATTTCCAGACAGATAAGAGATTGTATGAATCCTGTTCCTATTGGGAACGAAAAACAGAAAATAAAAATCCAGTTGAAATTTGAAGATTTGGTAAAATATAAAATTGCATTA</canonical>
            <polymorphic>TTTCTGGAAACGATTATTTGAAAACTCCTTTTTTTCGAATTTTCATTCAGATTTTCTCCTCTATTTCTGCAAAAGCGCTCTAATGCAAATGTGTGTGATGTAATGACGCTGTATCTTTGTATACATGACCCTCACACTCGACCTTATGGTAGTCTAGATTTTAGCACGCCTGTCTTAAGGACTGCAGAGGTTGTGTGCACAAAAAGATGAAAACTTAATTACATTATTGGGATCTCAGTTTCTGAGAAATTGAAAATAAAATGAAATTTGCTGGGGACAAAAACTGTTGAACAATAAAACATGCATTAGAATCAGTTTAATTATTTCAATGTTCACCATACTGATGATTTTCGAAAAATTACGGTCCTGGAAAAAAATTGAGATATTTGGAGCAATAATTTTTTGAAATTCGATTGAAGATTTTCTTTTTTCCGAATTCATCAAATTGTGTGAATTTTTCAAAAGCCAAATTACAGATCTTTTGGCAGTTCACAGCAATYATCACCATTTCTGCTTTAATTACTACCTTGTACTAATCTTTGGTAATTTTCCATCCATCACACATTTTGAACACCTCAATATATCTGTCATACATCTCGCGTGGGCATAAGAAAACTGGTCGTCGAATCAGTTTTCAAAGACACTTTTCAGAAGATATAACGTCTGATTCTGCTCCACAACATGTCGATTACGGTATCTCTATATCCTCTGTGTCTGGATGTTCTTTCGCTGTCTCCAGGCTTTTTTTATTAATGGACCAACAGCAATCGGGGGGTCTTGCGACATCTTCTCTTCAAACAAAAGATACGTAAGAATGTATGTTAGGTTGGGTAGATAGCCAGGAAAAAAAAACCGAGGTAAATTACTATTACCTGTTATGGTGTGGAAGATTTCCAGACAGATAAGAGATTGTATGAATCCTGTTCCTATTGGGAACGAAAAACAGAAAATAAAAATCCAGTTGAAATTTGAAGATTTGGTAAAATATAAAATTGCATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>316 179 105 54 38 37 31 28 28 27 25 21 21 19 17 16 10 10 9 9</canonical_bands>
                <polymorphic_bands>316 179 105 54 49 38 37 31 28 27 25 21 19 17 16 10 10 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTTCACCATACTGATGATTTT</pcr_primer_p1>
		<pcr_primer_p2>ATATTGAGGTGTTCAAAATGTGT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ATGTTCACCATACTGATGATTTTCGAAAAATTACGGTCCTGGAAAAAAATTGAGATATTTGGAGCAATAATTTTTTGAAATTCGATTGAAGATTTTCTTTTTTCCGAATTCATCAAATTGTGTGAATTTTTCAAAAGCCAAATTACAGATCTTTTGGCAGTTCACAGCAATTATCACCATTTCTGCTTTAATTACTACCTTGTACTAATCTTTGGTAATTTTCCATCCATCACACATTTTGAACACCTCAATAT</canonical_amplicon>
		<polymorphic_amplicon>ATGTTCACCATACTGATGATTTTCGAAAAATTACGGTCCTGGAAAAAAATTGAGATATTTGGAGCAATAATTTTTTGAAATTCGATTGAAGATTTTCTTTTTTCCGAATTCATCAAATTGTGTGAATTTTTCAAAAGCCAAATTACAGATCTTTTGGCAGTTCACAGCAATYATCACCATTTCTGCTTTAATTACTACCTTGTACTAATCTTTGGTAATTTTCCATCCATCACACATTTTGAACACCTCAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14848</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>237366</contig_pos>
        <strand>+</strand>
        <context>GAAGATTTTC[A/T]TTTTTCCGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTGAGATATTTGGAGCAATAATTTTTTGAAATTCGATTGAAGATTTTC</left_flank>
        <right_flank>TTTTTCCGAATTCATCAAATTGTGTGAATTTTTCAAAAGCCAAATTACAG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACATCAGGAAAATCTAGCGAAAATGATTTTTCTGGAAACTGTTGGTAAACTTGAAACTTGAAAAATCTTACTTTCTGGAAACGATTATTTGAAAACTCCTTTTTTTCGAATTTTCATTCAGATTTTCTCCTCTATTTCTGCAAAAGCGCTCTAATGCAAATGTGTGTGATGTAATGACGCTGTATCTTTGTATACATGACCCTCACACTCGACCTTATGGTAGTCTAGATTTTAGCACGCCTGTCTTAAGGACTGCAGAGGTTGTGTGCACAAAAAGATGAAAACTTAATTACATTATTGGGATCTCAGTTTCTGAGAAATTGAAAATAAAATGAAATTTGCTGGGGACAAAAACTGTTGAACAATAAAACATGCATTAGAATCAGTTTAATTATTTCAATGTTCACCATACTGATGATTTTCGAAAAATTACGGTCCTGGAAAAAAATTGAGATATTTGGAGCAATAATTTTTTGAAATTCGATTGAAGATTTTCTTTTTTCCGAATTCATCAAATTGTGTGAATTTTTCAAAAGCCAAATTACAGATCTTTTGGCAGTTCACAGCAATTATCACCATTTCTGCTTTAATTACTACCTTGTACTAATCTTTGGTAATTTTCCATCCATCACACATTTTGAACACCTCAATATATCTGTCATACATCTCGCGTGGGCATAAGAAAACTGGTCGTCGAATCAGTTTTCAAAGACACTTTTCAGAAGATATAACGTCTGATTCTGCTCCACAACATGTCGATTACGGTATCTCTATATCCTCTGTGTCTGGATGTTCTTTCGCTGTCTCCAGGCTTTTTTTATTAATGGACCAACAGCAATCGGGGGGTCTTGCGACATCTTCTCTTCAAACAAAAGATACGTAAGAATGTATGTTAGGTTGGGTAGATAGCCAGGAAAAAAAAACCGAGGTAAATTACTATTACCTGTTATGGTGTGGAAGATTTCCAGACAGATAAGAGATTGTATGAATCCTGTTC</canonical>
            <polymorphic>AAAACATCAGGAAAATCTAGCGAAAATGATTTTTCTGGAAACTGTTGGTAAACTTGAAACTTGAAAAATCTTACTTTCTGGAAACGATTATTTGAAAACTCCTTTTTTTCGAATTTTCATTCAGATTTTCTCCTCTATTTCTGCAAAAGCGCTCTAATGCAAATGTGTGTGATGTAATGACGCTGTATCTTTGTATACATGACCCTCACACTCGACCTTATGGTAGTCTAGATTTTAGCACGCCTGTCTTAAGGACTGCAGAGGTTGTGTGCACAAAAAGATGAAAACTTAATTACATTATTGGGATCTCAGTTTCTGAGAAATTGAAAATAAAATGAAATTTGCTGGGGACAAAAACTGTTGAACAATAAAACATGCATTAGAATCAGTTTAATTATTTCAATGTTCACCATACTGATGATTTTCGAAAAATTACGGTCCTGGAAAAAAATTGAGATATTTGGAGCAATAATTTTTTGAAATTCGATTGAAGATTTTCWTTTTTCCGAATTCATCAAATTGTGTGAATTTTTCAAAAGCCAAATTACAGATCTTTTGGCAGTTCACAGCAATTATCACCATTTCTGCTTTAATTACTACCTTGTACTAATCTTTGGTAATTTTCCATCCATCACACATTTTGAACACCTCAATATATCTGTCATACATCTCGCGTGGGCATAAGAAAACTGGTCGTCGAATCAGTTTTCAAAGACACTTTTCAGAAGATATAACGTCTGATTCTGCTCCACAACATGTCGATTACGGTATCTCTATATCCTCTGTGTCTGGATGTTCTTTCGCTGTCTCCAGGCTTTTTTTATTAATGGACCAACAGCAATCGGGGGGTCTTGCGACATCTTCTCTTCAAACAAAAGATACGTAAGAATGTATGTTAGGTTGGGTAGATAGCCAGGAAAAAAAAACCGAGGTAAATTACTATTACCTGTTATGGTGTGGAAGATTTCCAGACAGATAAGAGATTGTATGAATCCTGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGACAAAAACTGTTGAACAATAA</pcr_primer_p1>
		<pcr_primer_p2>AGTAATTAAAGCAGAAATGGTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGACAAAAACTGTTGAACAATAAAACATGCATTAGAATCAGTTTAATTATTTCAATGTTCACCATACTGATGATTTTCGAAAAATTACGGTCCTGGAAAAAAATTGAGATATTTGGAGCAATAATTTTTTGAAATTCGATTGAAGATTTTCTTTTTTCCGAATTCATCAAATTGTGTGAATTTTTCAAAAGCCAAATTACAGATCTTTTGGCAGTTCACAGCAATTATCACCATTTCTGCTTTAATTACT</canonical_amplicon>
		<polymorphic_amplicon>GGACAAAAACTGTTGAACAATAAAACATGCATTAGAATCAGTTTAATTATTTCAATGTTCACCATACTGATGATTTTCGAAAAATTACGGTCCTGGAAAAAAATTGAGATATTTGGAGCAATAATTTTTTGAAATTCGATTGAAGATTTTCWTTTTTCCGAATTCATCAAATTGTGTGAATTTTTCAAAAGCCAAATTACAGATCTTTTGGCAGTTCACAGCAATTATCACCATTTCTGCTTTAATTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14849</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>242353</contig_pos>
        <strand></strand>
        <context>GAAGAGCATA[T/G]AATTGAAATG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TACCACCAGAGTTGAGTCACCGTCTAAACCCAGAAGTGCCGAAGAGCATA</left_flank>
        <right_flank>AATTGAAATGGCAGACTCTTTTCACGGGGATATTAGGAGAGGACTAATTC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTCGGCGTCTCCTTGAAGCGTCACACTCTCTCGTTCCTTCTCTTTTTTCTCTCTTTCTCGCGCCCCTCCAGGGTAGGGGTAGAAAACAATTGGTAGATTCGCATGTTCCTATGCAAACTTTGGCTTGTTTTATATCTATTATTTTCAGAGAATCAAAAGTTTATAATGGATAAAACAAACTTTCCACCTCCTATCAACCATGACTTTCATGTCCATAAATCATCCTCTCTTCCAATTGAAGAGTAAGTTGAAAAATCTAGTTTTTGGAACTCAAAAAATTTTTTTCACAATTTTTAGAGACGTTGGAGATAACGCGCCAGGTCCTAAAATTGTTGGAATCGCTCCACATGTCGTTGATAAAATGGGATCTTTGATAATGGTAAGCTAATTTTGAAAGTTTTCGATCCTATTTTACCTATTTCAGGCTGTCAACAAGTATTGTAAAGCTACCACCAGAGTTGAGTCACCGTCTAAACCCAGAAGTGCCGAAGAGCATATAATTGAAATGGCAGACTCTTTTCACGGGGATATTAGGAGAGGACTAATTCGGAATCTTCTAAGAGATCTTGAATTGACCAGAGTGTACAGAATTCAAATCACTGGAGAGGTAAGATTTACCCCTAAAATGGAATATTGTCTTTTTGTAATCCTAAACTGTCTCAATTATGATATTTTATATTTTATTTGATTCTGATTAAAACGCATCAGATTCATGTTCTGGAATCTCCTAGAAGTTGAGAAAATCGTTGTTACAATTGTTTTTTTGCACTGAAAAGACGATTTTTGGAAACTGGCAAGCGTATTCTAAAATTTTTAGAAGTGTTTTAGGGAAAGTCAAGTTTTTGCTTATTTTGATATTTTCATCAAAATCTGGGTTTGCGAGGTGTTGAGGTTTTCTTGTTAGGAAAATTTAGAAAACTATAGTTCGAAATGTAATTATTTTCAGCACGACTACAACGGAAGAATCTCCCAAACTGCTGTGCTTGTTGCGATCTGGA</canonical>
            <polymorphic>GGCTCGGCGTCTCCTTGAAGCGTCACACTCTCTCGTTCCTTCTCTTTTTTCTCTCTTTCTCGCGCCCCTCCAGGGTAGGGGTAGAAAACAATTGGTAGATTCGCATGTTCCTATGCAAACTTTGGCTTGTTTTATATCTATTATTTTCAGAGAATCAAAAGTTTATAATGGATAAAACAAACTTTCCACCTCCTATCAACCATGACTTTCATGTCCATAAATCATCCTCTCTTCCAATTGAAGAGTAAGTTGAAAAATCTAGTTTTTGGAACTCAAAAAATTTTTTTCACAATTTTTAGAGACGTTGGAGATAACGCGCCAGGTCCTAAAATTGTTGGAATCGCTCCACATGTCGTTGATAAAATGGGATCTTTGATAATGGTAAGCTAATTTTGAAAGTTTTCGATCCTATTTTACCTATTTCAGGCTGTCAACAAGTATTGTAAAGCTACCACCAGAGTTGAGTCACCGTCTAAACCCAGAAGTGCCGAAGAGCATAKAATTGAAATGGCAGACTCTTTTCACGGGGATATTAGGAGAGGACTAATTCGGAATCTTCTAAGAGATCTTGAATTGACCAGAGTGTACAGAATTCAAATCACTGGAGAGGTAAGATTTACCCCTAAAATGGAATATTGTCTTTTTGTAATCCTAAACTGTCTCAATTATGATATTTTATATTTTATTTGATTCTGATTAAAACGCATCAGATTCATGTTCTGGAATCTCCTAGAAGTTGAGAAAATCGTTGTTACAATTGTTTTTTTGCACTGAAAAGACGATTTTTGGAAACTGGCAAGCGTATTCTAAAATTTTTAGAAGTGTTTTAGGGAAAGTCAAGTTTTTGCTTATTTTGATATTTTCATCAAAATCTGGGTTTGCGAGGTGTTGAGGTTTTCTTGTTAGGAAAATTTAGAAAACTATAGTTCGAAATGTAATTATTTTCAGCACGACTACAACGGAAGAATCTCCCAAACTGCTGTGCTTGTTGCGATCTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGAAAGTTTTCGATCCTAT</pcr_primer_p1>
		<pcr_primer_p2>ACAATATTCCATTTTAGGGGTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGAAAGTTTTCGATCCTATTTTACCTATTTCAGGCTGTCAACAAGTATTGTAAAGCTACCACCAGAGTTGAGTCACCGTCTAAACCCAGAAGTGCCGAAGAGCATATAATTGAAATGGCAGACTCTTTTCACGGGGATATTAGGAGAGGACTAATTCGGAATCTTCTAAGAGATCTTGAATTGACCAGAGTGTACAGAATTCAAATCACTGGAGAGGTAAGATTTACCCCTAAAATGGAATATTGT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGAAAGTTTTCGATCCTATTTTACCTATTTCAGGCTGTCAACAAGTATTGTAAAGCTACCACCAGAGTTGAGTCACCGTCTAAACCCAGAAGTGCCGAAGAGCATAKAATTGAAATGGCAGACTCTTTTCACGGGGATATTAGGAGAGGACTAATTCGGAATCTTCTAAGAGATCTTGAATTGACCAGAGTGTACAGAATTCAAATCACTGGAGAGGTAAGATTTACCCCTAAAATGGAATATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14850</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>242389</contig_pos>
        <strand></strand>
        <context>GGGGATATTA[G/T]GAGAGGACTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGCCGAAGAGCATATAATTGAAATGGCAGACTCTTTTCACGGGGATATTA</left_flank>
        <right_flank>GAGAGGACTAATTCGGAATCTTCTAAGAGATCTTGAATTGACCAGAGTGT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTTCTCTTTTTTCTCTCTTTCTCGCGCCCCTCCAGGGTAGGGGTAGAAAACAATTGGTAGATTCGCATGTTCCTATGCAAACTTTGGCTTGTTTTATATCTATTATTTTCAGAGAATCAAAAGTTTATAATGGATAAAACAAACTTTCCACCTCCTATCAACCATGACTTTCATGTCCATAAATCATCCTCTCTTCCAATTGAAGAGTAAGTTGAAAAATCTAGTTTTTGGAACTCAAAAAATTTTTTTCACAATTTTTAGAGACGTTGGAGATAACGCGCCAGGTCCTAAAATTGTTGGAATCGCTCCACATGTCGTTGATAAAATGGGATCTTTGATAATGGTAAGCTAATTTTGAAAGTTTTCGATCCTATTTTACCTATTTCAGGCTGTCAACAAGTATTGTAAAGCTACCACCAGAGTTGAGTCACCGTCTAAACCCAGAAGTGCCGAAGAGCATATAATTGAAATGGCAGACTCTTTTCACGGGGATATTAGGAGAGGACTAATTCGGAATCTTCTAAGAGATCTTGAATTGACCAGAGTGTACAGAATTCAAATCACTGGAGAGGTAAGATTTACCCCTAAAATGGAATATTGTCTTTTTGTAATCCTAAACTGTCTCAATTATGATATTTTATATTTTATTTGATTCTGATTAAAACGCATCAGATTCATGTTCTGGAATCTCCTAGAAGTTGAGAAAATCGTTGTTACAATTGTTTTTTTGCACTGAAAAGACGATTTTTGGAAACTGGCAAGCGTATTCTAAAATTTTTAGAAGTGTTTTAGGGAAAGTCAAGTTTTTGCTTATTTTGATATTTTCATCAAAATCTGGGTTTGCGAGGTGTTGAGGTTTTCTTGTTAGGAAAATTTAGAAAACTATAGTTCGAAATGTAATTATTTTCAGCACGACTACAACGGAAGAATCTCCCAAACTGCTGTGCTTGTTGCGATCTGGAGGAGCTTGAAGTCGTTCGAGCATCCATACGATCGAA</canonical>
            <polymorphic>TCCTTCTCTTTTTTCTCTCTTTCTCGCGCCCCTCCAGGGTAGGGGTAGAAAACAATTGGTAGATTCGCATGTTCCTATGCAAACTTTGGCTTGTTTTATATCTATTATTTTCAGAGAATCAAAAGTTTATAATGGATAAAACAAACTTTCCACCTCCTATCAACCATGACTTTCATGTCCATAAATCATCCTCTCTTCCAATTGAAGAGTAAGTTGAAAAATCTAGTTTTTGGAACTCAAAAAATTTTTTTCACAATTTTTAGAGACGTTGGAGATAACGCGCCAGGTCCTAAAATTGTTGGAATCGCTCCACATGTCGTTGATAAAATGGGATCTTTGATAATGGTAAGCTAATTTTGAAAGTTTTCGATCCTATTTTACCTATTTCAGGCTGTCAACAAGTATTGTAAAGCTACCACCAGAGTTGAGTCACCGTCTAAACCCAGAAGTGCCGAAGAGCATATAATTGAAATGGCAGACTCTTTTCACGGGGATATTAKGAGAGGACTAATTCGGAATCTTCTAAGAGATCTTGAATTGACCAGAGTGTACAGAATTCAAATCACTGGAGAGGTAAGATTTACCCCTAAAATGGAATATTGTCTTTTTGTAATCCTAAACTGTCTCAATTATGATATTTTATATTTTATTTGATTCTGATTAAAACGCATCAGATTCATGTTCTGGAATCTCCTAGAAGTTGAGAAAATCGTTGTTACAATTGTTTTTTTGCACTGAAAAGACGATTTTTGGAAACTGGCAAGCGTATTCTAAAATTTTTAGAAGTGTTTTAGGGAAAGTCAAGTTTTTGCTTATTTTGATATTTTCATCAAAATCTGGGTTTGCGAGGTGTTGAGGTTTTCTTGTTAGGAAAATTTAGAAAACTATAGTTCGAAATGTAATTATTTTCAGCACGACTACAACGGAAGAATCTCCCAAACTGCTGTGCTTGTTGCGATCTGGAGGAGCTTGAAGTCGTTCGAGCATCCATACGATCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGAAAGTTTTCGATCCTAT</pcr_primer_p1>
		<pcr_primer_p2>ACAATATTCCATTTTAGGGGTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGAAAGTTTTCGATCCTATTTTACCTATTTCAGGCTGTCAACAAGTATTGTAAAGCTACCACCAGAGTTGAGTCACCGTCTAAACCCAGAAGTGCCGAAGAGCATATAATTGAAATGGCAGACTCTTTTCACGGGGATATTAGGAGAGGACTAATTCGGAATCTTCTAAGAGATCTTGAATTGACCAGAGTGTACAGAATTCAAATCACTGGAGAGGTAAGATTTACCCCTAAAATGGAATATTGT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGAAAGTTTTCGATCCTATTTTACCTATTTCAGGCTGTCAACAAGTATTGTAAAGCTACCACCAGAGTTGAGTCACCGTCTAAACCCAGAAGTGCCGAAGAGCATATAATTGAAATGGCAGACTCTTTTCACGGGGATATTAKGAGAGGACTAATTCGGAATCTTCTAAGAGATCTTGAATTGACCAGAGTGTACAGAATTCAAATCACTGGAGAGGTAAGATTTACCCCTAAAATGGAATATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14851</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>247394</contig_pos>
        <strand>+</strand>
        <context>ATGAAAGCAT[A/G]TATCAGAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACAACCCACAACTATAACCCCATTCCTCATCTCCAAAACATGAAAGCAT</left_flank>
        <right_flank>TATCAGAATTAGCAATGAGAGCGCGGATTCTGTAACTGTTGAGAACGTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCATTTCCTCACTTGTTTCAGAGAGAAATACTCAAAAACATCGAGTATCCAAATCTCTTTTTTTTCTTTCGTCTGTGTCCGAAAAAATGCGTTCAGTGATAAAATCAACTCAACAGAAAAGATTCGGGACAATCACAGATATCCAATACCTTTGTGTTAGAGATGAACCAATGATTCTTGTTGTTCCGCGTAAGCATCCAAGGGAATTAATATTTATGAAATTTACAGAGGATACTGAGAATAACTATTTTCAATTGAAAGTGACCGGTTTCTGTTAGGCGAGTTTAGATGAACGGGGATGCATAAAAAATATCATATTCAGGATGTCCAACGAATACGAACAGTACATCGTAGCATCATATAATCGTGATGAGAAAACATCTGTAATCGAATTGATTCACAACTCCATTTTAAGTTTATTTGGCAATGGTATGCATTACGAATGGAGAACAACCCACAACTATAACCCCATTCCTCATCTCCAAAACATGAAAGCATATATCAGAATTAGCAATGAGAGCGCGGATTCTGTAACTGTTGAGAACGTTTTCTTGCAATCTCCAAAAATCAAGTTTGTGATTCTTTACGCTTCCAGTCTCACAGAACAATTTAATACGAATTCAAAAGTGTATCATGCAGAATCTAATGAAATCATTCATCTCAAAAATATTTTCCCAAGCATTTTTTCGGCAAGCATTTTTGTGATGCTACAATTACGAAACTACAGAATCGACAGAAATTGCAAACAAATGGAAATCTGGAGAAGCATTCGAAAAGCTGGATCTGTTACGTATTGAACTTCACTCCTTAAATTTTTCCCAGGGTGATGCAATTGGGGCTAAATATATTGATGAAACAAAAAGAGCACTGACGCACACTTTGCCCAAAATGTAAGAGATGTTGGTATATCGTGAAAACTCTAATAGGCCCTCTAGCTCTCGACGGTAAGTCATTTTATCTTGATTCCCAAAGATATAGGAAAGTAATACACTGTCAAAA</canonical>
            <polymorphic>CGCATTTCCTCACTTGTTTCAGAGAGAAATACTCAAAAACATCGAGTATCCAAATCTCTTTTTTTTCTTTCGTCTGTGTCCGAAAAAATGCGTTCAGTGATAAAATCAACTCAACAGAAAAGATTCGGGACAATCACAGATATCCAATACCTTTGTGTTAGAGATGAACCAATGATTCTTGTTGTTCCGCGTAAGCATCCAAGGGAATTAATATTTATGAAATTTACAGAGGATACTGAGAATAACTATTTTCAATTGAAAGTGACCGGTTTCTGTTAGGCGAGTTTAGATGAACGGGGATGCATAAAAAATATCATATTCAGGATGTCCAACGAATACGAACAGTACATCGTAGCATCATATAATCGTGATGAGAAAACATCTGTAATCGAATTGATTCACAACTCCATTTTAAGTTTATTTGGCAATGGTATGCATTACGAATGGAGAACAACCCACAACTATAACCCCATTCCTCATCTCCAAAACATGAAAGCATRTATCAGAATTAGCAATGAGAGCGCGGATTCTGTAACTGTTGAGAACGTTTTCTTGCAATCTCCAAAAATCAAGTTTGTGATTCTTTACGCTTCCAGTCTCACAGAACAATTTAATACGAATTCAAAAGTGTATCATGCAGAATCTAATGAAATCATTCATCTCAAAAATATTTTCCCAAGCATTTTTTCGGCAAGCATTTTTGTGATGCTACAATTACGAAACTACAGAATCGACAGAAATTGCAAACAAATGGAAATCTGGAGAAGCATTCGAAAAGCTGGATCTGTTACGTATTGAACTTCACTCCTTAAATTTTTCCCAGGGTGATGCAATTGGGGCTAAATATATTGATGAAACAAAAAGAGCACTGACGCACACTTTGCCCAAAATGTAAGAGATGTTGGTATATCGTGAAAACTCTAATAGGCCCTCTAGCTCTCGACGGTAAGTCATTTTATCTTGATTCCCAAAGATATAGGAAAGTAATACACTGTCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTGATGAGAAAACATCTGTAAT</pcr_primer_p1>
		<pcr_primer_p2>ATTAAATTGTTCTGTGAGACTGG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGTGATGAGAAAACATCTGTAATCGAATTGATTCACAACTCCATTTTAAGTTTATTTGGCAATGGTATGCATTACGAATGGAGAACAACCCACAACTATAACCCCATTCCTCATCTCCAAAACATGAAAGCATATATCAGAATTAGCAATGAGAGCGCGGATTCTGTAACTGTTGAGAACGTTTTCTTGCAATCTCCAAAAATCAAGTTTGTGATTCTTTACGCTTCCAGTCTCACAGAACAATTTAAT</canonical_amplicon>
		<polymorphic_amplicon>CGTGATGAGAAAACATCTGTAATCGAATTGATTCACAACTCCATTTTAAGTTTATTTGGCAATGGTATGCATTACGAATGGAGAACAACCCACAACTATAACCCCATTCCTCATCTCCAAAACATGAAAGCATRTATCAGAATTAGCAATGAGAGCGCGGATTCTGTAACTGTTGAGAACGTTTTCTTGCAATCTCCAAAAATCAAGTTTGTGATTCTTTACGCTTCCAGTCTCACAGAACAATTTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14852</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>254107</contig_pos>
        <strand>+</strand>
        <context>AAACTTAGGT[A/G]TTCTGTAGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTCTCTCTGACTGCCACCCGTTTCGAAAAAGGCTATGGGAAACTTAGGT</left_flank>
        <right_flank>TTCTGTAGTCTCTAGATTTCTCATCTTCCTCTGAATGACAGGCGTGTCAT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATATTTCAGTTCCTTAGAAATATATCAAAAAACGGTTAACAGACCAAATATTCTTGATATTATGATAAACATTTTGTCAGTACACCATTTTGTTATATCTTTCACAGAAAATAAGATACAGTAAAGGAATTAATATTGAAAAAAGCGTTTTAAATTTAATTTTTCGCCATTTTAACTATTTCTGAAGTCCGGAGCTCGACTGTCAAGTTTCCGAAAGCTTCGAAACTTTTGAAGGGTGTCAAAGAGATCTAGATTAAAAATTTGGCATTTACAGAATGGGGGATCTTCTATTAAAGTTTTTGAGGCATCTTACGAATAGGAACCAAAAAAATAATTTTTTCCGTTTTTCCATCAATTTATCTATCATTTTAAAGAGGGTTTCATTTATACTCAAAAATTTGTTTCTTGTTAAAAAAAACGAACGAGTATTATCATTAACATCAAAATCTTCTCTCTGACTGCCACCCGTTTCGAAAAAGGCTATGGGAAACTTAGGTATTCTGTAGTCTCTAGATTTCTCATCTTCCTCTGAATGACAGGCGTGTCATCGTTGGTTTAGGGGCATGGCGATAATATGTCGCGAAAAATTTGAAAACAGTTTTAGAGACGGTATATAAACGGTACAAATAAGTAAGTTGGACCATTCCATTGCTGTGAACCCCTCCCCCAAACCAAATATGGAAAACTTCCTTACTGTCTTCATTTTCCTCATCCGTCAACAAGTTGAAGAATTCCAAGCCAGTCGTCATTTTAAAGATCGTCGAAAGTAAGAATTTATTATGTAGATAGATAATCAGAAATCTAAATGTTCATTTTTTTAGTGAAGATATATATGTTTATGATCATGACGATGATCTTTATGTGACTCTCCCTGGAACGGTCCCAGAAAGCGTCTTGAATGACCCTTTTTTGCTTTTGAGATGGGAAAACGACTATTTTGCCAAAGAACTCCCTGCCTTCACCGAACAGTGGTTTCAAGAAACCCGAGCGGTTTATAT</canonical>
            <polymorphic>ATATATTTCAGTTCCTTAGAAATATATCAAAAAACGGTTAACAGACCAAATATTCTTGATATTATGATAAACATTTTGTCAGTACACCATTTTGTTATATCTTTCACAGAAAATAAGATACAGTAAAGGAATTAATATTGAAAAAAGCGTTTTAAATTTAATTTTTCGCCATTTTAACTATTTCTGAAGTCCGGAGCTCGACTGTCAAGTTTCCGAAAGCTTCGAAACTTTTGAAGGGTGTCAAAGAGATCTAGATTAAAAATTTGGCATTTACAGAATGGGGGATCTTCTATTAAAGTTTTTGAGGCATCTTACGAATAGGAACCAAAAAAATAATTTTTTCCGTTTTTCCATCAATTTATCTATCATTTTAAAGAGGGTTTCATTTATACTCAAAAATTTGTTTCTTGTTAAAAAAAACGAACGAGTATTATCATTAACATCAAAATCTTCTCTCTGACTGCCACCCGTTTCGAAAAAGGCTATGGGAAACTTAGGTRTTCTGTAGTCTCTAGATTTCTCATCTTCCTCTGAATGACAGGCGTGTCATCGTTGGTTTAGGGGCATGGCGATAATATGTCGCGAAAAATTTGAAAACAGTTTTAGAGACGGTATATAAACGGTACAAATAAGTAAGTTGGACCATTCCATTGCTGTGAACCCCTCCCCCAAACCAAATATGGAAAACTTCCTTACTGTCTTCATTTTCCTCATCCGTCAACAAGTTGAAGAATTCCAAGCCAGTCGTCATTTTAAAGATCGTCGAAAGTAAGAATTTATTATGTAGATAGATAATCAGAAATCTAAATGTTCATTTTTTTAGTGAAGATATATATGTTTATGATCATGACGATGATCTTTATGTGACTCTCCCTGGAACGGTCCCAGAAAGCGTCTTGAATGACCCTTTTTTGCTTTTGAGATGGGAAAACGACTATTTTGCCAAAGAACTCCCTGCCTTCACCGAACAGTGGTTTCAAGAAACCCGAGCGGTTTATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCAAAATCTTCTCTCTGACTG</pcr_primer_p1>
		<pcr_primer_p2>GAAGTTTTCCATATTTGGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CATCAAAATCTTCTCTCTGACTGCCACCCGTTTCGAAAAAGGCTATGGGAAACTTAGGTATTCTGTAGTCTCTAGATTTCTCATCTTCCTCTGAATGACAGGCGTGTCATCGTTGGTTTAGGGGCATGGCGATAATATGTCGCGAAAAATTTGAAAACAGTTTTAGAGACGGTATATAAACGGTACAAATAAGTAAGTTGGACCATTCCATTGCTGTGAACCCCTCCCCCAAACCAAATATGGAAAACTTC</canonical_amplicon>
		<polymorphic_amplicon>CATCAAAATCTTCTCTCTGACTGCCACCCGTTTCGAAAAAGGCTATGGGAAACTTAGGTRTTCTGTAGTCTCTAGATTTCTCATCTTCCTCTGAATGACAGGCGTGTCATCGTTGGTTTAGGGGCATGGCGATAATATGTCGCGAAAAATTTGAAAACAGTTTTAGAGACGGTATATAAACGGTACAAATAAGTAAGTTGGACCATTCCATTGCTGTGAACCCCTCCCCCAAACCAAATATGGAAAACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14853</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>254167</contig_pos>
        <strand>+</strand>
        <context>TCGTTGGTTT[A/C]GGGGCATGGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTCTAGATTTCTCATCTTCCTCTGAATGACAGGCGTGTCATCGTTGGTTT</left_flank>
        <right_flank>GGGGCATGGCGATAATATGTCGCGAAAAATTTGAAAACAGTTTTAGAGAC</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATGATAAACATTTTGTCAGTACACCATTTTGTTATATCTTTCACAGAAAATAAGATACAGTAAAGGAATTAATATTGAAAAAAGCGTTTTAAATTTAATTTTTCGCCATTTTAACTATTTCTGAAGTCCGGAGCTCGACTGTCAAGTTTCCGAAAGCTTCGAAACTTTTGAAGGGTGTCAAAGAGATCTAGATTAAAAATTTGGCATTTACAGAATGGGGGATCTTCTATTAAAGTTTTTGAGGCATCTTACGAATAGGAACCAAAAAAATAATTTTTTCCGTTTTTCCATCAATTTATCTATCATTTTAAAGAGGGTTTCATTTATACTCAAAAATTTGTTTCTTGTTAAAAAAAACGAACGAGTATTATCATTAACATCAAAATCTTCTCTCTGACTGCCACCCGTTTCGAAAAAGGCTATGGGAAACTTAGGTATTCTGTAGTCTCTAGATTTCTCATCTTCCTCTGAATGACAGGCGTGTCATCGTTGGTTTAGGGGCATGGCGATAATATGTCGCGAAAAATTTGAAAACAGTTTTAGAGACGGTATATAAACGGTACAAATAAGTAAGTTGGACCATTCCATTGCTGTGAACCCCTCCCCCAAACCAAATATGGAAAACTTCCTTACTGTCTTCATTTTCCTCATCCGTCAACAAGTTGAAGAATTCCAAGCCAGTCGTCATTTTAAAGATCGTCGAAAGTAAGAATTTATTATGTAGATAGATAATCAGAAATCTAAATGTTCATTTTTTTAGTGAAGATATATATGTTTATGATCATGACGATGATCTTTATGTGACTCTCCCTGGAACGGTCCCAGAAAGCGTCTTGAATGACCCTTTTTTGCTTTTGAGATGGGAAAACGACTATTTTGCCAAAGAACTCCCTGCCTTCACCGAACAGTGGTTTCAAGAAACCCGAGCGGTTTATATTGAAAGACAGAAGAACGCCGAAAATTGTAATATCCGAATGACTTGTACTTAGTAATAGTT</canonical>
            <polymorphic>ATTATGATAAACATTTTGTCAGTACACCATTTTGTTATATCTTTCACAGAAAATAAGATACAGTAAAGGAATTAATATTGAAAAAAGCGTTTTAAATTTAATTTTTCGCCATTTTAACTATTTCTGAAGTCCGGAGCTCGACTGTCAAGTTTCCGAAAGCTTCGAAACTTTTGAAGGGTGTCAAAGAGATCTAGATTAAAAATTTGGCATTTACAGAATGGGGGATCTTCTATTAAAGTTTTTGAGGCATCTTACGAATAGGAACCAAAAAAATAATTTTTTCCGTTTTTCCATCAATTTATCTATCATTTTAAAGAGGGTTTCATTTATACTCAAAAATTTGTTTCTTGTTAAAAAAAACGAACGAGTATTATCATTAACATCAAAATCTTCTCTCTGACTGCCACCCGTTTCGAAAAAGGCTATGGGAAACTTAGGTATTCTGTAGTCTCTAGATTTCTCATCTTCCTCTGAATGACAGGCGTGTCATCGTTGGTTTMGGGGCATGGCGATAATATGTCGCGAAAAATTTGAAAACAGTTTTAGAGACGGTATATAAACGGTACAAATAAGTAAGTTGGACCATTCCATTGCTGTGAACCCCTCCCCCAAACCAAATATGGAAAACTTCCTTACTGTCTTCATTTTCCTCATCCGTCAACAAGTTGAAGAATTCCAAGCCAGTCGTCATTTTAAAGATCGTCGAAAGTAAGAATTTATTATGTAGATAGATAATCAGAAATCTAAATGTTCATTTTTTTAGTGAAGATATATATGTTTATGATCATGACGATGATCTTTATGTGACTCTCCCTGGAACGGTCCCAGAAAGCGTCTTGAATGACCCTTTTTTGCTTTTGAGATGGGAAAACGACTATTTTGCCAAAGAACTCCCTGCCTTCACCGAACAGTGGTTTCAAGAAACCCGAGCGGTTTATATTGAAAGACAGAAGAACGCCGAAAATTGTAATATCCGAATGACTTGTACTTAGTAATAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCAAAATCTTCTCTCTGACTG</pcr_primer_p1>
		<pcr_primer_p2>GAAGTTTTCCATATTTGGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CATCAAAATCTTCTCTCTGACTGCCACCCGTTTCGAAAAAGGCTATGGGAAACTTAGGTATTCTGTAGTCTCTAGATTTCTCATCTTCCTCTGAATGACAGGCGTGTCATCGTTGGTTTAGGGGCATGGCGATAATATGTCGCGAAAAATTTGAAAACAGTTTTAGAGACGGTATATAAACGGTACAAATAAGTAAGTTGGACCATTCCATTGCTGTGAACCCCTCCCCCAAACCAAATATGGAAAACTTC</canonical_amplicon>
		<polymorphic_amplicon>CATCAAAATCTTCTCTCTGACTGCCACCCGTTTCGAAAAAGGCTATGGGAAACTTAGGTATTCTGTAGTCTCTAGATTTCTCATCTTCCTCTGAATGACAGGCGTGTCATCGTTGGTTTMGGGGCATGGCGATAATATGTCGCGAAAAATTTGAAAACAGTTTTAGAGACGGTATATAAACGGTACAAATAAGTAAGTTGGACCATTCCATTGCTGTGAACCCCTCCCCCAAACCAAATATGGAAAACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14854</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>261514</contig_pos>
        <strand>+</strand>
        <context>ATCTTCGAAT[A/G]AAAAATTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAGTTTTGAAGTAAATTTATAGATATCAGAAGCTTATAAATCTTCGAAT</left_flank>
        <right_flank>AAAAATTTCAAAACCTGTGTAGTAAGTACGCTACATCATGTACCAACTTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTCAGTGAGAGTGTTAATTTTTGCCCGGTGTGTCGACCTGGCCCGGCACTGTCTGCCCGGGTCTGAAATTCCAAAGTTCTATAAATTTGTTAAAAATCTTCGAAGTTTTAACGAAAAATTTCGAGAAATTGAAAAGGTTCGATACTTATTTAAAGACGGAATATATTCCATAATTTTTTACCTTAAGTTATGCTTCAATTTAAGTTATGCTTCAATTTCAACATTCCAAGGGTCGGTATAGAGGAATACTTTGAACTCTGAGACTTTACGAGTCAGGCCATGTTTTGGATTTTTCCATTATTACATTACGAATTTCAATATTGTGATACACAAAATAGGAAGCCATAAATTGCTCACTGTAAACGACTTCTATTACCTTAATAAAATGATATTTTGCTTAAATTATGGTTGTTCTAACAAGTGTCTCGAGAGATTTTAGAACATGACATAGTTTTGAAGTAAATTTATAGATATCAGAAGCTTATAAATCTTCGAATGAAAAATTTCAAAACCTGTGTAGTAAGTACGCTACATCATGTACCAACTTGCTTTGATTATTGTCAGAGGTACTGAAGAATGTTCAACAAAAAAATAAACTTTCTAGATATTATGATGACCTGAATGACATTTGACGACTTATTTTATATATTTCACAGGAGCCAAAGTGTGAAAACTCTTCTAATATTAGCATAACGGTACTGAATTAATACAATTATTTTTTCAACGTGATCAGTGTTATCTTCGATATTTTCTATAAAGTAGGTAGTCGGCAAATGCTAAAAACTGCTACTACACCTATAGAAACATAATGTTCAAAATTAAATTCGAATTTCCCGCCGCCGACGGCGAAAGACTACAAAAATCTTGTTCGAGGTCAGGCTGTCTTCTCTTCTCCCCGTTTCGGTCGATGAAGGCACGTATCAAACAATCGCTACTGCCCACCATATTATTGATCTTAGTATTTATATGTACAACTTCAATCACTAATGCTCAATAGA</canonical>
            <polymorphic>TGGTCAGTGAGAGTGTTAATTTTTGCCCGGTGTGTCGACCTGGCCCGGCACTGTCTGCCCGGGTCTGAAATTCCAAAGTTCTATAAATTTGTTAAAAATCTTCGAAGTTTTAACGAAAAATTTCGAGAAATTGAAAAGGTTCGATACTTATTTAAAGACGGAATATATTCCATAATTTTTTACCTTAAGTTATGCTTCAATTTAAGTTATGCTTCAATTTCAACATTCCAAGGGTCGGTATAGAGGAATACTTTGAACTCTGAGACTTTACGAGTCAGGCCATGTTTTGGATTTTTCCATTATTACATTACGAATTTCAATATTGTGATACACAAAATAGGAAGCCATAAATTGCTCACTGTAAACGACTTCTATTACCTTAATAAAATGATATTTTGCTTAAATTATGGTTGTTCTAACAAGTGTCTCGAGAGATTTTAGAACATGACATAGTTTTGAAGTAAATTTATAGATATCAGAAGCTTATAAATCTTCGAATRAAAAATTTCAAAACCTGTGTAGTAAGTACGCTACATCATGTACCAACTTGCTTTGATTATTGTCAGAGGTACTGAAGAATGTTCAACAAAAAAATAAACTTTCTAGATATTATGATGACCTGAATGACATTTGACGACTTATTTTATATATTTCACAGGAGCCAAAGTGTGAAAACTCTTCTAATATTAGCATAACGGTACTGAATTAATACAATTATTTTTTCAACGTGATCAGTGTTATCTTCGATATTTTCTATAAAGTAGGTAGTCGGCAAATGCTAAAAACTGCTACTACACCTATAGAAACATAATGTTCAAAATTAAATTCGAATTTCCCGCCGCCGACGGCGAAAGACTACAAAAATCTTGTTCGAGGTCAGGCTGTCTTCTCTTCTCCCCGTTTCGGTCGATGAAGGCACGTATCAAACAATCGCTACTGCCCACCATATTATTGATCTTAGTATTTATATGTACAACTTCAATCACTAATGCTCAATAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>496 339 119 28 18</canonical_bands>
                <polymorphic_bands>835 119 28 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACATGACATAGTTTTGAAGTAAA</pcr_primer_p1>
		<pcr_primer_p2>TTAATTCAGTACCGTTATGCTAATA</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>GAACATGACATAGTTTTGAAGTAAATTTATAGATATCAGAAGCTTATAAATCTTCGAATGAAAAATTTCAAAACCTGTGTAGTAAGTACGCTACATCATGTACCAACTTGCTTTGATTATTGTCAGAGGTACTGAAGAATGTTCAACAAAAAAATAAACTTTCTAGATATTATGATGACCTGAATGACATTTGACGACTTATTTTATATATTTCACAGGAGCCAAAGTGTGAAAACTCTTCTAATATTAGCATAACGGTACTGAATTAA</canonical_amplicon>
		<polymorphic_amplicon>GAACATGACATAGTTTTGAAGTAAATTTATAGATATCAGAAGCTTATAAATCTTCGAATRAAAAATTTCAAAACCTGTGTAGTAAGTACGCTACATCATGTACCAACTTGCTTTGATTATTGTCAGAGGTACTGAAGAATGTTCAACAAAAAAATAAACTTTCTAGATATTATGATGACCTGAATGACATTTGACGACTTATTTTATATATTTCACAGGAGCCAAAGTGTGAAAACTCTTCTAATATTAGCATAACGGTACTGAATTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14855</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>286148</contig_pos>
        <strand>+</strand>
        <context>TGTATTGGTG[C/T]CCATGATACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAAAAAAAACGTTATGAAACATATTCTGAAAACGATTATGTATTGGTG</left_flank>
        <right_flank>CCATGATACTCAACGGGACCGTTTCCGATTTATTTATATTTTGCTTCTGA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGGCCACGCGATGGGACACAGTGAGAAGGACACTCTTACGTGGACACATTCTGATTGGTCGACTGTCTTTTTCGTACCACCCGTGTGTGGACCATATTACGTGTATAGTGGAGAGGTCAATCAATCGATATTCTACGACATGAGGCTAGAGAAAAGAGAGATAGGCAGACGTAAAAGTGAGAGAGTGCCATAGAAAAGAGCTGGCTTTTGAAGACGCAGAAAGAGAAAAAAATAAAAAAGAAGTAAAGGTTTCAGGAAATCCGATCGTGGGAAATCGTTGAACTTGAGATAACTCGATTTCACAAAAAATGAAGTTCAAGAGGCCTGTTTAAAAAAAGAAACAATGAAATATAAATTTTGATGGAATTATAATCTCACAGCTCTCTCAATACTCTTAGATGCAATCAGATTTTCTCAGTTCAGACGAATGCTCCAAAATATTCCAAATGAAAAAAAAACGTTATGAAACATATTCTGAAAACGATTATGTATTGGTGCCCATGATACTCAACGGGACCGTTTCCGATTTATTTATATTTTGCTTCTGAGTTTCTTGATTAAAAACAGTTCAATGTAATCTTCATCGCCAAGTGAGAAAACCTTGCCAAAGACGAAACCGGTTTTCTTTAGGTTTCCATATCACATAGAGACAAAAATATTTGAAGTACAGACGTGAAAAAAGAAAATAATTTTTTCAGAAAGATATATAGTTTTGCTTTAACAACTTAAATAAGCGCCCGTTCAGCTTGTCTGCGAGATGAGCTGCTTAATGTTGTCTTTCGCGTGGATGTTGAGGAAGTTCATGTATCATCTCGATGGTCAGCTGATATCTTTTAAGGGAAAATGTGGAAAAGGAATAATGTGTTCATTTTGAAAACCAAAAACTCAGAATCATTTAGAGCACACAATCGCCGTTAAGATGTATCAAACCTTAAAGCGAAATCTGATCGTTTAACAAGGTGTTCTCAACACTTTGTGCACTCAGATTTTTATGAAAA</canonical>
            <polymorphic>AAAGGCCACGCGATGGGACACAGTGAGAAGGACACTCTTACGTGGACACATTCTGATTGGTCGACTGTCTTTTTCGTACCACCCGTGTGTGGACCATATTACGTGTATAGTGGAGAGGTCAATCAATCGATATTCTACGACATGAGGCTAGAGAAAAGAGAGATAGGCAGACGTAAAAGTGAGAGAGTGCCATAGAAAAGAGCTGGCTTTTGAAGACGCAGAAAGAGAAAAAAATAAAAAAGAAGTAAAGGTTTCAGGAAATCCGATCGTGGGAAATCGTTGAACTTGAGATAACTCGATTTCACAAAAAATGAAGTTCAAGAGGCCTGTTTAAAAAAAGAAACAATGAAATATAAATTTTGATGGAATTATAATCTCACAGCTCTCTCAATACTCTTAGATGCAATCAGATTTTCTCAGTTCAGACGAATGCTCCAAAATATTCCAAATGAAAAAAAAACGTTATGAAACATATTCTGAAAACGATTATGTATTGGTGYCCATGATACTCAACGGGACCGTTTCCGATTTATTTATATTTTGCTTCTGAGTTTCTTGATTAAAAACAGTTCAATGTAATCTTCATCGCCAAGTGAGAAAACCTTGCCAAAGACGAAACCGGTTTTCTTTAGGTTTCCATATCACATAGAGACAAAAATATTTGAAGTACAGACGTGAAAAAAGAAAATAATTTTTTCAGAAAGATATATAGTTTTGCTTTAACAACTTAAATAAGCGCCCGTTCAGCTTGTCTGCGAGATGAGCTGCTTAATGTTGTCTTTCGCGTGGATGTTGAGGAAGTTCATGTATCATCTCGATGGTCAGCTGATATCTTTTAAGGGAAAATGTGGAAAAGGAATAATGTGTTCATTTTGAAAACCAAAAACTCAGAATCATTTAGAGCACACAATCGCCGTTAAGATGTATCAAACCTTAAAGCGAAATCTGATCGTTTAACAAGGTGTTCTCAACACTTTGTGCACTCAGATTTTTATGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>501 481 18</canonical_bands>
                <polymorphic_bands>982 18</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 404 77 18</canonical_bands>
                <polymorphic_bands>905 77 18</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>498 483 19</canonical_bands>
                <polymorphic_bands>517 483</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGATGCAATCAGATTTTCTCA</pcr_primer_p1>
		<pcr_primer_p2>TGTGATATGGAAACCTAAAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAGATGCAATCAGATTTTCTCAGTTCAGACGAATGCTCCAAAATATTCCAAATGAAAAAAAAACGTTATGAAACATATTCTGAAAACGATTATGTATTGGTGCCCATGATACTCAACGGGACCGTTTCCGATTTATTTATATTTTGCTTCTGAGTTTCTTGATTAAAAACAGTTCAATGTAATCTTCATCGCCAAGTGAGAAAACCTTGCCAAAGACGAAACCGGTTTTCTTTAGGTTTCCATATCACA</canonical_amplicon>
		<polymorphic_amplicon>TAGATGCAATCAGATTTTCTCAGTTCAGACGAATGCTCCAAAATATTCCAAATGAAAAAAAAACGTTATGAAACATATTCTGAAAACGATTATGTATTGGTGYCCATGATACTCAACGGGACCGTTTCCGATTTATTTATATTTTGCTTCTGAGTTTCTTGATTAAAAACAGTTCAATGTAATCTTCATCGCCAAGTGAGAAAACCTTGCCAAAGACGAAACCGGTTTTCTTTAGGTTTCCATATCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14856</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>286510</contig_pos>
        <strand>+</strand>
        <context>AAAAGGAATA[A/G]TGTGTTCATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCTCGATGGTCAGCTGATATCTTTTAAGGGAAAATGTGGAAAAGGAATA</left_flank>
        <right_flank>TGTGTTCATTTTGAAAACCAAAAACTCAGAATCATTTAGAGCACACAATC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGAATTATAATCTCACAGCTCTCTCAATACTCTTAGATGCAATCAGATTTTCTCAGTTCAGACGAATGCTCCAAAATATTCCAAATGAAAAAAAAACGTTATGAAACATATTCTGAAAACGATTATGTATTGGTGCCCATGATACTCAACGGGACCGTTTCCGATTTATTTATATTTTGCTTCTGAGTTTCTTGATTAAAAACAGTTCAATGTAATCTTCATCGCCAAGTGAGAAAACCTTGCCAAAGACGAAACCGGTTTTCTTTAGGTTTCCATATCACATAGAGACAAAAATATTTGAAGTACAGACGTGAAAAAAGAAAATAATTTTTTCAGAAAGATATATAGTTTTGCTTTAACAACTTAAATAAGCGCCCGTTCAGCTTGTCTGCGAGATGAGCTGCTTAATGTTGTCTTTCGCGTGGATGTTGAGGAAGTTCATGTATCATCTCGATGGTCAGCTGATATCTTTTAAGGGAAAATGTGGAAAAGGAATAATGTGTTCATTTTGAAAACCAAAAACTCAGAATCATTTAGAGCACACAATCGCCGTTAAGATGTATCAAACCTTAAAGCGAAATCTGATCGTTTAACAAGGTGTTCTCAACACTTTGTGCACTCAGATTTTTATGAAAACTTCAGTATAGGTTAAGAATAATCTATCTAGACACCTATAAGAATTTCAGAATCTGCAAGTTCAGCGCTAGAAATCCCGTTTTCAATGTAAAACAGCGACTTTCAAAGACGATTTTCTCAACTTCTATGGAGTTTTAAAACATGAAACCTGTTGTGTTTTATTCGAATTGAATGAAATTGCCTATGTCAGGTATTTTTTGAGGTTCCCTCGTGAACACTGCGTTTCGGACAAAGATAATCAAAAGGGCTCCCGAAAATATCAGTTCACAATCGCAGCCTAATTTGGAGGTGATACGTAGCTGAAAAAGTTGTTCATTTTCCAGAAAAAAATATCAAATTATATGAATCCGGATTGTAAAAGC</canonical>
            <polymorphic>ATGGAATTATAATCTCACAGCTCTCTCAATACTCTTAGATGCAATCAGATTTTCTCAGTTCAGACGAATGCTCCAAAATATTCCAAATGAAAAAAAAACGTTATGAAACATATTCTGAAAACGATTATGTATTGGTGCCCATGATACTCAACGGGACCGTTTCCGATTTATTTATATTTTGCTTCTGAGTTTCTTGATTAAAAACAGTTCAATGTAATCTTCATCGCCAAGTGAGAAAACCTTGCCAAAGACGAAACCGGTTTTCTTTAGGTTTCCATATCACATAGAGACAAAAATATTTGAAGTACAGACGTGAAAAAAGAAAATAATTTTTTCAGAAAGATATATAGTTTTGCTTTAACAACTTAAATAAGCGCCCGTTCAGCTTGTCTGCGAGATGAGCTGCTTAATGTTGTCTTTCGCGTGGATGTTGAGGAAGTTCATGTATCATCTCGATGGTCAGCTGATATCTTTTAAGGGAAAATGTGGAAAAGGAATARTGTGTTCATTTTGAAAACCAAAAACTCAGAATCATTTAGAGCACACAATCGCCGTTAAGATGTATCAAACCTTAAAGCGAAATCTGATCGTTTAACAAGGTGTTCTCAACACTTTGTGCACTCAGATTTTTATGAAAACTTCAGTATAGGTTAAGAATAATCTATCTAGACACCTATAAGAATTTCAGAATCTGCAAGTTCAGCGCTAGAAATCCCGTTTTCAATGTAAAACAGCGACTTTCAAAGACGATTTTCTCAACTTCTATGGAGTTTTAAAACATGAAACCTGTTGTGTTTTATTCGAATTGAATGAAATTGCCTATGTCAGGTATTTTTTGAGGTTCCCTCGTGAACACTGCGTTTCGGACAAAGATAATCAAAAGGGCTCCCGAAAATATCAGTTCACAATCGCAGCCTAATTTGGAGGTGATACGTAGCTGAAAAAGTTGTTCATTTTCCAGAAAAAAATATCAAATTATATGAATCCGGATTGTAAAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGATGAGCTGCTTAATGTTGT</pcr_primer_p1>
		<pcr_primer_p2>AGTTTTCATAAAAATCTGAGTGC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAGATGAGCTGCTTAATGTTGTCTTTCGCGTGGATGTTGAGGAAGTTCATGTATCATCTCGATGGTCAGCTGATATCTTTTAAGGGAAAATGTGGAAAAGGAATAATGTGTTCATTTTGAAAACCAAAAACTCAGAATCATTTAGAGCACACAATCGCCGTTAAGATGTATCAAACCTTAAAGCGAAATCTGATCGTTTAACAAGGTGTTCTCAACACTTTGTGCACTCAGATTTTTATGAAAACT</canonical_amplicon>
		<polymorphic_amplicon>GAGATGAGCTGCTTAATGTTGTCTTTCGCGTGGATGTTGAGGAAGTTCATGTATCATCTCGATGGTCAGCTGATATCTTTTAAGGGAAAATGTGGAAAAGGAATARTGTGTTCATTTTGAAAACCAAAAACTCAGAATCATTTAGAGCACACAATCGCCGTTAAGATGTATCAAACCTTAAAGCGAAATCTGATCGTTTAACAAGGTGTTCTCAACACTTTGTGCACTCAGATTTTTATGAAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14857</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>364874</contig_pos>
        <strand>+</strand>
        <context>TGGTGCTATA[A/T]CCTGTCACAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGGATCGCTAGTATATATTCCGCTGAGCGCTGACGTGTGTTGGTGCTATA</left_flank>
        <right_flank>CCTGTCACAAGGAAAAAGCGGAAACATCGCGCGGCCAGATAGCTATCAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGATATATTTCAAGGACACTGAAACATGTAAATTAAGAGTCGCACTTTGTTTGAATAAAACTGTTTATGAAAAATTGTGTACATATTTTGCCAAACATTTCTATTTCAGGGGATCTTTAAATCTATCTTCCTAGTCAAAAGTGTCAGTTCACAGGAAACAAAGTTTACCTTGAATTTCGAATTTCTCGATTTGAATTTTAGCTCACAATGTGAATTGTTGATTTTTTTTATCAATAACGGTCGCTTCAGAAATGTGACATAAGAACTGAACTGAATTTTTCTAAATTGTTTCTAATTTTGCTTCACTTAAAAAAACGTGTCAAAAATGAGTCGTGAACACCAAAATGTTTCTAATAAATTTTATATGGGTTTCGTACCATTTTTATGCATTTGATTCTTCTCTTTTCATCTTTTTTATGAATTGTTTTATGAATTGCATGTTTTTGAAGGGATCGCTAGTATATATTCCGCTGAGCGCTGACGTGTGTTGGTGCTATATCCTGTCACAAGGAAAAAGCGGAAACATCGCGCGGCCAGATAGCTATCAAGATCAATTTTTTGTCCAAGTCATGTGAGCTGGCACCAGCGAAAACTAATCCATTTTCAGCCAACAGAAGACTAAAAAGGAAATACAAAACCAAGAAAAAGCTGAGACTGAAAAATCTTGTGACATGTGTCCGCATATCACGCGACTTCTATTAGCATCTAGTAGCAATTGGCGTGACGTCTTCGTTACAAATCTGTACCGAACACATGTCAAGTGAAGTGACGTGATTTCTGGAAAATTGTAGAGAGTCAAAAGATACAAAACAAAATAAAATTACTTCCAGAACTGTCCACTTTTTGAATGAAGAATCACGCAATACAAAATCTGATCGAACGAAATTGAAGAGATAAACGTTTTTATCAAGATATTCTTAATATGTATAAAAATATAACGAAAAAAACTGTTGAAACCTGATTAGGACTATTCAAGGTTGAATACTCAACGCTTCTATA</canonical>
            <polymorphic>AAGATATATTTCAAGGACACTGAAACATGTAAATTAAGAGTCGCACTTTGTTTGAATAAAACTGTTTATGAAAAATTGTGTACATATTTTGCCAAACATTTCTATTTCAGGGGATCTTTAAATCTATCTTCCTAGTCAAAAGTGTCAGTTCACAGGAAACAAAGTTTACCTTGAATTTCGAATTTCTCGATTTGAATTTTAGCTCACAATGTGAATTGTTGATTTTTTTTATCAATAACGGTCGCTTCAGAAATGTGACATAAGAACTGAACTGAATTTTTCTAAATTGTTTCTAATTTTGCTTCACTTAAAAAAACGTGTCAAAAATGAGTCGTGAACACCAAAATGTTTCTAATAAATTTTATATGGGTTTCGTACCATTTTTATGCATTTGATTCTTCTCTTTTCATCTTTTTTATGAATTGTTTTATGAATTGCATGTTTTTGAAGGGATCGCTAGTATATATTCCGCTGAGCGCTGACGTGTGTTGGTGCTATAWCCTGTCACAAGGAAAAAGCGGAAACATCGCGCGGCCAGATAGCTATCAAGATCAATTTTTTGTCCAAGTCATGTGAGCTGGCACCAGCGAAAACTAATCCATTTTCAGCCAACAGAAGACTAAAAAGGAAATACAAAACCAAGAAAAAGCTGAGACTGAAAAATCTTGTGACATGTGTCCGCATATCACGCGACTTCTATTAGCATCTAGTAGCAATTGGCGTGACGTCTTCGTTACAAATCTGTACCGAACACATGTCAAGTGAAGTGACGTGATTTCTGGAAAATTGTAGAGAGTCAAAAGATACAAAACAAAATAAAATTACTTCCAGAACTGTCCACTTTTTGAATGAAGAATCACGCAATACAAAATCTGATCGAACGAAATTGAAGAGATAAACGTTTTTATCAAGATATTCTTAATATGTATAAAAATATAACGAAAAAAACTGTTGAAACCTGATTAGGACTATTCAAGGTTGAATACTCAACGCTTCTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGTTTTATGAATTGCATGTTT</pcr_primer_p1>
		<pcr_primer_p2>GTCACAAGATTTTTCAGTCTCAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTGTTTTATGAATTGCATGTTTTTGAAGGGATCGCTAGTATATATTCCGCTGAGCGCTGACGTGTGTTGGTGCTATATCCTGTCACAAGGAAAAAGCGGAAACATCGCGCGGCCAGATAGCTATCAAGATCAATTTTTTGTCCAAGTCATGTGAGCTGGCACCAGCGAAAACTAATCCATTTTCAGCCAACAGAAGACTAAAAAGGAAATACAAAACCAAGAAAAAGCTGAGACTGAAAAATCTTGTGAC</canonical_amplicon>
		<polymorphic_amplicon>ATTGTTTTATGAATTGCATGTTTTTGAAGGGATCGCTAGTATATATTCCGCTGAGCGCTGACGTGTGTTGGTGCTATAWCCTGTCACAAGGAAAAAGCGGAAACATCGCGCGGCCAGATAGCTATCAAGATCAATTTTTTGTCCAAGTCATGTGAGCTGGCACCAGCGAAAACTAATCCATTTTCAGCCAACAGAAGACTAAAAAGGAAATACAAAACCAAGAAAAAGCTGAGACTGAAAAATCTTGTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14858</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>364850</contig_pos>
        <strand>+</strand>
        <context>ATTCCSCTRA[A/G]CGCTGACGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTATGAATTGCATGTTTTTGAAGGGATCGCTAGTATATATTCCGCTGA</left_flank>
        <right_flank>CGCTGACGTGTGTTGGTGCTATATCCTGTCACAAGGAAAAAGCGGAAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGGACGTTTGGAATGGCAGAACAAAGATATATTTCAAGGACACTGAAACATGTAAATTAAGAGTCGCACTTTGTTTGAATAAAACTGTTTATGAAAAATTGTGTACATATTTTGCCAAACATTTCTATTTCAGGGGATCTTTAAATCTATCTTCCTAGTCAAAAGTGTCAGTTCACAGGAAACAAAGTTTACCTTGAATTTCGAATTTCTCGATTTGAATTTTAGCTCACAATGTGAATTGTTGATTTTTTTTATCAATAACGGTCGCTTCAGAAATGTGACATAAGAACTGAACTGAATTTTTCTAAATTGTTTCTAATTTTGCTTCACTTAAAAAAACGTGTCAAAAATGAGTCGTGAACACCAAAATGTTTCTAATAAATTTTATATGGGTTTCGTACCATTTTTATGCATTTGATTCTTCTCTTTTCATCTTTTTTATGAATTGTTTTATGAATTGCATGTTTTTGAAGGGATCGCTAGTATATATTCCGCTGAGCGCTGACGTGTGTTGGTGCTATATCCTGTCACAAGGAAAAAGCGGAAACATCGCGCGGCCAGATAGCTATCAAGATCAATTTTTTGTCCAAGTCATGTGAGCTGGCACCAGCGAAAACTAATCCATTTTCAGCCAACAGAAGACTAAAAAGGAAATACAAAACCAAGAAAAAGCTGAGACTGAAAAATCTTGTGACATGTGTCCGCATATCACGCGACTTCTATTAGCATCTAGTAGCAATTGGCGTGACGTCTTCGTTACAAATCTGTACCGAACACATGTCAAGTGAAGTGACGTGATTTCTGGAAAATTGTAGAGAGTCAAAAGATACAAAACAAAATAAAATTACTTCCAGAACTGTCCACTTTTTGAATGAAGAATCACGCAATACAAAATCTGATCGAACGAAATTGAAGAGATAAACGTTTTTATCAAGATATTCTTAATATGTATAAAAATATAACGAAAAAAACTGTTGAAACCTGATTAGGACTATTCAA</canonical>
            <polymorphic>AAGGACGTTTGGAATGGCAGAACAAAGATATATTTCAAGGACACTGAAACATGTAAATTAAGAGTCGCACTTTGTTTGAATAAAACTGTTTATGAAAAATTGTGTACATATTTTGCCAAACATTTCTATTTCAGGGGATCTTTAAATCTATCTTCCTAGTCAAAAGTGTCAGTTCACAGGAAACAAAGTTTACCTTGAATTTCGAATTTCTCGATTTGAATTTTAGCTCACAATGTGAATTGTTGATTTTTTTTATCAATAACGGTCGCTTCAGAAATGTGACATAAGAACTGAACTGAATTTTTCTAAATTGTTTCTAATTTTGCTTCACTTAAAAAAACGTGTCAAAAATGAGTCGTGAACACCAAAATGTTTCTAATAAATTTTATATGGGTTTCGTACCATTTTTATGCATTTGATTCTTCTCTTTTCATCTTTTTTATGAATTGTTTTATGAATTGCATGTTTTTGAAGGGATCGCTAGTATATATTCCGCTGARCGCTGACGTGTGTTGGTGCTATATCCTGTCACAAGGAAAAAGCGGAAACATCGCGCGGCCAGATAGCTATCAAGATCAATTTTTTGTCCAAGTCATGTGAGCTGGCACCAGCGAAAACTAATCCATTTTCAGCCAACAGAAGACTAAAAAGGAAATACAAAACCAAGAAAAAGCTGAGACTGAAAAATCTTGTGACATGTGTCCGCATATCACGCGACTTCTATTAGCATCTAGTAGCAATTGGCGTGACGTCTTCGTTACAAATCTGTACCGAACACATGTCAAGTGAAGTGACGTGATTTCTGGAAAATTGTAGAGAGTCAAAAGATACAAAACAAAATAAAATTACTTCCAGAACTGTCCACTTTTTGAATGAAGAATCACGCAATACAAAATCTGATCGAACGAAATTGAAGAGATAAACGTTTTTATCAAGATATTCTTAATATGTATAAAAATATAACGAAAAAAACTGTTGAAACCTGATTAGGACTATTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCGCT</site>
                <isoschizomers>
                    <enzyme>AfeI</enzyme>
                    <enzyme>Aor51HI</enzyme>
                    <enzyme>Eco47III</enzyme>
                    <enzyme>FunI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 445 53</canonical_bands>
                <polymorphic_bands>555 445</polymorphic_bands>
            </assay>
            <assay>
                <site>GCTNAGC</site>
                <isoschizomers>
                    <enzyme>BlpI</enzyme>
                    <enzyme>Bpu1102I</enzyme>
                    <enzyme>Bsp1720I</enzyme>
                    <enzyme>CelII</enzyme>
                    <enzyme>EspI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>496 326 178</canonical_bands>
                <polymorphic_bands>674 326</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGTTTTATGAATTGCATGTTT</pcr_primer_p1>
		<pcr_primer_p2>GTCACAAGATTTTTCAGTCTCAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTGTTTTATGAATTGCATGTTTTTGAAGGGATCGCTAGTATATATTCCGCTGAGCGCTGACGTGTGTTGGTGCTATATCCTGTCACAAGGAAAAAGCGGAAACATCGCGCGGCCAGATAGCTATCAAGATCAATTTTTTGTCCAAGTCATGTGAGCTGGCACCAGCGAAAACTAATCCATTTTCAGCCAACAGAAGACTAAAAAGGAAATACAAAACCAAGAAAAAGCTGAGACTGAAAAATCTTGTGAC</canonical_amplicon>
		<polymorphic_amplicon>ATTGTTTTATGAATTGCATGTTTTTGAAGGGATCGCTAGTATATATTCCGCTGARCGCTGACGTGTGTTGGTGCTATATCCTGTCACAAGGAAAAAGCGGAAACATCGCGCGGCCAGATAGCTATCAAGATCAATTTTTTGTCCAAGTCATGTGAGCTGGCACCAGCGAAAACTAATCCATTTTCAGCCAACAGAAGACTAAAAAGGAAATACAAAACCAAGAAAAAGCTGAGACTGAAAAATCTTGTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14859</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>364848</contig_pos>
        <strand>+</strand>
        <context>ATATTCCSCT[A/G]ARCGCTGACG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTTTATGAATTGCATGTTTTTGAAGGGATCGCTAGTATATATTCCGCT</left_flank>
        <right_flank>AGCGCTGACGTGTGTTGGTGCTATATCCTGTCACAAGGAAAAAGCGGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAGGACGTTTGGAATGGCAGAACAAAGATATATTTCAAGGACACTGAAACATGTAAATTAAGAGTCGCACTTTGTTTGAATAAAACTGTTTATGAAAAATTGTGTACATATTTTGCCAAACATTTCTATTTCAGGGGATCTTTAAATCTATCTTCCTAGTCAAAAGTGTCAGTTCACAGGAAACAAAGTTTACCTTGAATTTCGAATTTCTCGATTTGAATTTTAGCTCACAATGTGAATTGTTGATTTTTTTTATCAATAACGGTCGCTTCAGAAATGTGACATAAGAACTGAACTGAATTTTTCTAAATTGTTTCTAATTTTGCTTCACTTAAAAAAACGTGTCAAAAATGAGTCGTGAACACCAAAATGTTTCTAATAAATTTTATATGGGTTTCGTACCATTTTTATGCATTTGATTCTTCTCTTTTCATCTTTTTTATGAATTGTTTTATGAATTGCATGTTTTTGAAGGGATCGCTAGTATATATTCCGCTGAGCGCTGACGTGTGTTGGTGCTATATCCTGTCACAAGGAAAAAGCGGAAACATCGCGCGGCCAGATAGCTATCAAGATCAATTTTTTGTCCAAGTCATGTGAGCTGGCACCAGCGAAAACTAATCCATTTTCAGCCAACAGAAGACTAAAAAGGAAATACAAAACCAAGAAAAAGCTGAGACTGAAAAATCTTGTGACATGTGTCCGCATATCACGCGACTTCTATTAGCATCTAGTAGCAATTGGCGTGACGTCTTCGTTACAAATCTGTACCGAACACATGTCAAGTGAAGTGACGTGATTTCTGGAAAATTGTAGAGAGTCAAAAGATACAAAACAAAATAAAATTACTTCCAGAACTGTCCACTTTTTGAATGAAGAATCACGCAATACAAAATCTGATCGAACGAAATTGAAGAGATAAACGTTTTTATCAAGATATTCTTAATATGTATAAAAATATAACGAAAAAAACTGTTGAAACCTGATTAGGACTATTC</canonical>
            <polymorphic>CAAAGGACGTTTGGAATGGCAGAACAAAGATATATTTCAAGGACACTGAAACATGTAAATTAAGAGTCGCACTTTGTTTGAATAAAACTGTTTATGAAAAATTGTGTACATATTTTGCCAAACATTTCTATTTCAGGGGATCTTTAAATCTATCTTCCTAGTCAAAAGTGTCAGTTCACAGGAAACAAAGTTTACCTTGAATTTCGAATTTCTCGATTTGAATTTTAGCTCACAATGTGAATTGTTGATTTTTTTTATCAATAACGGTCGCTTCAGAAATGTGACATAAGAACTGAACTGAATTTTTCTAAATTGTTTCTAATTTTGCTTCACTTAAAAAAACGTGTCAAAAATGAGTCGTGAACACCAAAATGTTTCTAATAAATTTTATATGGGTTTCGTACCATTTTTATGCATTTGATTCTTCTCTTTTCATCTTTTTTATGAATTGTTTTATGAATTGCATGTTTTTGAAGGGATCGCTAGTATATATTCCGCTRAGCGCTGACGTGTGTTGGTGCTATATCCTGTCACAAGGAAAAAGCGGAAACATCGCGCGGCCAGATAGCTATCAAGATCAATTTTTTGTCCAAGTCATGTGAGCTGGCACCAGCGAAAACTAATCCATTTTCAGCCAACAGAAGACTAAAAAGGAAATACAAAACCAAGAAAAAGCTGAGACTGAAAAATCTTGTGACATGTGTCCGCATATCACGCGACTTCTATTAGCATCTAGTAGCAATTGGCGTGACGTCTTCGTTACAAATCTGTACCGAACACATGTCAAGTGAAGTGACGTGATTTCTGGAAAATTGTAGAGAGTCAAAAGATACAAAACAAAATAAAATTACTTCCAGAACTGTCCACTTTTTGAATGAAGAATCACGCAATACAAAATCTGATCGAACGAAATTGAAGAGATAAACGTTTTTATCAAGATATTCTTAATATGTATAAAAATATAACGAAAAAAACTGTTGAAACCTGATTAGGACTATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGTTTTATGAATTGCATGTTT</pcr_primer_p1>
		<pcr_primer_p2>GTCACAAGATTTTTCAGTCTCAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTGTTTTATGAATTGCATGTTTTTGAAGGGATCGCTAGTATATATTCCGCTGAGCGCTGACGTGTGTTGGTGCTATATCCTGTCACAAGGAAAAAGCGGAAACATCGCGCGGCCAGATAGCTATCAAGATCAATTTTTTGTCCAAGTCATGTGAGCTGGCACCAGCGAAAACTAATCCATTTTCAGCCAACAGAAGACTAAAAAGGAAATACAAAACCAAGAAAAAGCTGAGACTGAAAAATCTTGTGAC</canonical_amplicon>
		<polymorphic_amplicon>ATTGTTTTATGAATTGCATGTTTTTGAAGGGATCGCTAGTATATATTCCGCTRAGCGCTGACGTGTGTTGGTGCTATATCCTGTCACAAGGAAAAAGCGGAAACATCGCGCGGCCAGATAGCTATCAAGATCAATTTTTTGTCCAAGTCATGTGAGCTGGCACCAGCGAAAACTAATCCATTTTCAGCCAACAGAAGACTAAAAAGGAAATACAAAACCAAGAAAAAGCTGAGACTGAAAAATCTTGTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14860</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>364845</contig_pos>
        <strand>+</strand>
        <context>TATATATTCC[C/G]CTRARCGCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATTGTTTTATGAATTGCATGTTTTTGAAGGGATCGCTAGTATATATTCC</left_flank>
        <right_flank>CTGAGCGCTGACGTGTGTTGGTGCTATATCCTGTCACAAGGAAAAAGCGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACAAAGGACGTTTGGAATGGCAGAACAAAGATATATTTCAAGGACACTGAAACATGTAAATTAAGAGTCGCACTTTGTTTGAATAAAACTGTTTATGAAAAATTGTGTACATATTTTGCCAAACATTTCTATTTCAGGGGATCTTTAAATCTATCTTCCTAGTCAAAAGTGTCAGTTCACAGGAAACAAAGTTTACCTTGAATTTCGAATTTCTCGATTTGAATTTTAGCTCACAATGTGAATTGTTGATTTTTTTTATCAATAACGGTCGCTTCAGAAATGTGACATAAGAACTGAACTGAATTTTTCTAAATTGTTTCTAATTTTGCTTCACTTAAAAAAACGTGTCAAAAATGAGTCGTGAACACCAAAATGTTTCTAATAAATTTTATATGGGTTTCGTACCATTTTTATGCATTTGATTCTTCTCTTTTCATCTTTTTTATGAATTGTTTTATGAATTGCATGTTTTTGAAGGGATCGCTAGTATATATTCCGCTGAGCGCTGACGTGTGTTGGTGCTATATCCTGTCACAAGGAAAAAGCGGAAACATCGCGCGGCCAGATAGCTATCAAGATCAATTTTTTGTCCAAGTCATGTGAGCTGGCACCAGCGAAAACTAATCCATTTTCAGCCAACAGAAGACTAAAAAGGAAATACAAAACCAAGAAAAAGCTGAGACTGAAAAATCTTGTGACATGTGTCCGCATATCACGCGACTTCTATTAGCATCTAGTAGCAATTGGCGTGACGTCTTCGTTACAAATCTGTACCGAACACATGTCAAGTGAAGTGACGTGATTTCTGGAAAATTGTAGAGAGTCAAAAGATACAAAACAAAATAAAATTACTTCCAGAACTGTCCACTTTTTGAATGAAGAATCACGCAATACAAAATCTGATCGAACGAAATTGAAGAGATAAACGTTTTTATCAAGATATTCTTAATATGTATAAAAATATAACGAAAAAAACTGTTGAAACCTGATTAGGACTA</canonical>
            <polymorphic>GAACAAAGGACGTTTGGAATGGCAGAACAAAGATATATTTCAAGGACACTGAAACATGTAAATTAAGAGTCGCACTTTGTTTGAATAAAACTGTTTATGAAAAATTGTGTACATATTTTGCCAAACATTTCTATTTCAGGGGATCTTTAAATCTATCTTCCTAGTCAAAAGTGTCAGTTCACAGGAAACAAAGTTTACCTTGAATTTCGAATTTCTCGATTTGAATTTTAGCTCACAATGTGAATTGTTGATTTTTTTTATCAATAACGGTCGCTTCAGAAATGTGACATAAGAACTGAACTGAATTTTTCTAAATTGTTTCTAATTTTGCTTCACTTAAAAAAACGTGTCAAAAATGAGTCGTGAACACCAAAATGTTTCTAATAAATTTTATATGGGTTTCGTACCATTTTTATGCATTTGATTCTTCTCTTTTCATCTTTTTTATGAATTGTTTTATGAATTGCATGTTTTTGAAGGGATCGCTAGTATATATTCCSCTGAGCGCTGACGTGTGTTGGTGCTATATCCTGTCACAAGGAAAAAGCGGAAACATCGCGCGGCCAGATAGCTATCAAGATCAATTTTTTGTCCAAGTCATGTGAGCTGGCACCAGCGAAAACTAATCCATTTTCAGCCAACAGAAGACTAAAAAGGAAATACAAAACCAAGAAAAAGCTGAGACTGAAAAATCTTGTGACATGTGTCCGCATATCACGCGACTTCTATTAGCATCTAGTAGCAATTGGCGTGACGTCTTCGTTACAAATCTGTACCGAACACATGTCAAGTGAAGTGACGTGATTTCTGGAAAATTGTAGAGAGTCAAAAGATACAAAACAAAATAAAATTACTTCCAGAACTGTCCACTTTTTGAATGAAGAATCACGCAATACAAAATCTGATCGAACGAAATTGAAGAGATAAACGTTTTTATCAAGATATTCTTAATATGTATAAAAATATAACGAAAAAAACTGTTGAAACCTGATTAGGACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>498 292 210</canonical_bands>
                <polymorphic_bands>708 292</polymorphic_bands>
            </assay>
            <assay>
                <site>GCTNAGC</site>
                <isoschizomers>
                    <enzyme>BlpI</enzyme>
                    <enzyme>Bpu1102I</enzyme>
                    <enzyme>Bsp1720I</enzyme>
                    <enzyme>CelII</enzyme>
                    <enzyme>EspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATTCTTCTCTTTTCATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGGTTTTGTATTTCCTTTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGATTCTTCTCTTTTCATCTTTTTTATGAATTGTTTTATGAATTGCATGTTTTTGAAGGGATCGCTAGTATATATTCCGCTGAGCGCTGACGTGTGTTGGTGCTATATCCTGTCACAAGGAAAAAGCGGAAACATCGCGCGGCCAGATAGCTATCAAGATCAATTTTTTGTCCAAGTCATGTGAGCTGGCACCAGCGAAAACTAATCCATTTTCAGCCAACAGAAGACTAAAAAGGAAATACAAAACCAA</canonical_amplicon>
		<polymorphic_amplicon>TGATTCTTCTCTTTTCATCTTTTTTATGAATTGTTTTATGAATTGCATGTTTTTGAAGGGATCGCTAGTATATATTCCSCTGAGCGCTGACGTGTGTTGGTGCTATATCCTGTCACAAGGAAAAAGCGGAAACATCGCGCGGCCAGATAGCTATCAAGATCAATTTTTTGTCCAAGTCATGTGAGCTGGCACCAGCGAAAACTAATCCATTTTCAGCCAACAGAAGACTAAAAAGGAAATACAAAACCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14861</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>404047</contig_pos>
        <strand>+</strand>
        <context>CAGCAGGCAA[A/T]TGGCTTTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAGGCAACTCCGAGGTGTCTTTAAGCACAAACGCTTTTCCAGCAGGCAA</left_flank>
        <right_flank>TGGCTTTGAATCTCGTCAGCTTCGTTGCTGAGACTTCCAATGAGAATGAC</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTGAGAAATGTCTTTATTTCATTTGAAAATATCAGTGTTTGAACGTTTTCTTCTGAAACTTATTTACCTGCGAAAGTTTACTTAAAAATGGGAAATTTTGATTTTTTCATTCGTCACGTTACTCTTCCAAAATTTCAGAACTACGCAAAATTTTTTTCAAAAAAAAATATCCAGAATTTTTGGCAAGATCCTGCTGCTGACTCACATGTTTTTGCTATGGACAACAAGTTTTCTTGGTACCGTACACGCTACGGCGTAATCGCAGAAGAGAACTATTCTTCTTACGCAATGGATGTTTTCAAAACATTTATGTTTGCATTCACGTAACTATGCAGCAATTCTTCATTTACGCACTAACTATACATGAACAGAAATCGTATAAAATTCCAATAAAATTTTCACAACAAATCACTGAGCAATGGTGGACGAGAAAATAGTTTCCATGATTTTAGGCAACTCCGAGGTGTCTTTAAGCACAAACGCTTTTCCAGCAGGCAATTGGCTTTGAATCTCGTCAGCTTCGTTGCTGAGACTTCCAATGAGAATGACGAATGAATTGATTCCAGGGCGTCGAGTCATGACATCTTTGACTTTTCTTGGTTGGATGTTGTATCTGAACAATAAGAAAATTCAGTGAGAATTGTTGGTCAAAGTTTTACCTGCGCAAGTTAGCATCGGACACCAAGATAACCACTGTTTCGTCGAAATCGTCTTTTTTCACATTCAATTCGCATCCGGCCCATTCCAAACCTGCTACTGTATTATCACCGCTAGCACAATACTGGGAACAGAAAGTTTAAAATTTTGAGAATACATTTTTTTGTTACCTGTGTGTGAGCAATCATCCGTTTCAACACGTCTAAACGATCTTTGTTATTTTTTGGGTGCTGATCCGTTTTGACAAAGGACACAGAGGGCGAGTCTCCAGAATGTCCAACAATGTCATACTGAAAAAAATGACAAGGATTAGTAGATGACACCAAAAATCACCGAACCTGC</canonical>
            <polymorphic>AGTGAGAAATGTCTTTATTTCATTTGAAAATATCAGTGTTTGAACGTTTTCTTCTGAAACTTATTTACCTGCGAAAGTTTACTTAAAAATGGGAAATTTTGATTTTTTCATTCGTCACGTTACTCTTCCAAAATTTCAGAACTACGCAAAATTTTTTTCAAAAAAAAATATCCAGAATTTTTGGCAAGATCCTGCTGCTGACTCACATGTTTTTGCTATGGACAACAAGTTTTCTTGGTACCGTACACGCTACGGCGTAATCGCAGAAGAGAACTATTCTTCTTACGCAATGGATGTTTTCAAAACATTTATGTTTGCATTCACGTAACTATGCAGCAATTCTTCATTTACGCACTAACTATACATGAACAGAAATCGTATAAAATTCCAATAAAATTTTCACAACAAATCACTGAGCAATGGTGGACGAGAAAATAGTTTCCATGATTTTAGGCAACTCCGAGGTGTCTTTAAGCACAAACGCTTTTCCAGCAGGCAAWTGGCTTTGAATCTCGTCAGCTTCGTTGCTGAGACTTCCAATGAGAATGACGAATGAATTGATTCCAGGGCGTCGAGTCATGACATCTTTGACTTTTCTTGGTTGGATGTTGTATCTGAACAATAAGAAAATTCAGTGAGAATTGTTGGTCAAAGTTTTACCTGCGCAAGTTAGCATCGGACACCAAGATAACCACTGTTTCGTCGAAATCGTCTTTTTTCACATTCAATTCGCATCCGGCCCATTCCAAACCTGCTACTGTATTATCACCGCTAGCACAATACTGGGAACAGAAAGTTTAAAATTTTGAGAATACATTTTTTTGTTACCTGTGTGTGAGCAATCATCCGTTTCAACACGTCTAAACGATCTTTGTTATTTTTTGGGTGCTGATCCGTTTTGACAAAGGACACAGAGGGCGAGTCTCCAGAATGTCCAACAATGTCATACTGAAAAAAATGACAAGGATTAGTAGATGACACCAAAAATCACCGAACCTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>199 162 103 94 87 75 73 58 46 37 26 18 11 11</canonical_bands>
                <polymorphic_bands>199 162 161 94 87 75 73 46 37 26 18 11 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAATAAAATTTTCACAACAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCACTGAATTTTCTTATTGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCAATAAAATTTTCACAACAAATCACTGAGCAATGGTGGACGAGAAAATAGTTTCCATGATTTTAGGCAACTCCGAGGTGTCTTTAAGCACAAACGCTTTTCCAGCAGGCAATTGGCTTTGAATCTCGTCAGCTTCGTTGCTGAGACTTCCAATGAGAATGACGAATGAATTGATTCCAGGGCGTCGAGTCATGACATCTTTGACTTTTCTTGGTTGGATGTTGTATCTGAACAATAAGAAAATTCAGTGA</canonical_amplicon>
		<polymorphic_amplicon>CCAATAAAATTTTCACAACAAATCACTGAGCAATGGTGGACGAGAAAATAGTTTCCATGATTTTAGGCAACTCCGAGGTGTCTTTAAGCACAAACGCTTTTCCAGCAGGCAAWTGGCTTTGAATCTCGTCAGCTTCGTTGCTGAGACTTCCAATGAGAATGACGAATGAATTGATTCCAGGGCGTCGAGTCATGACATCTTTGACTTTTCTTGGTTGGATGTTGTATCTGAACAATAAGAAAATTCAGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14862</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>403900</contig_pos>
        <strand>+</strand>
        <context>TTCATTTACG[C/G]ACTAACTATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAACATTTATGTTTGCATTCACGTAACTATGCAGCAATTCTTCATTTACG</left_flank>
        <right_flank>ACTAACTATACATGAACAGAAATCGTATAAAATTCCAATAAAATTTTCAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCAGACTCCTGACAATGGTCAAAATGACCAAAAATCTACTGAAAACATGCTTTTCTTAATCAGTCTGACCGGTACCGTACCTAATCCTGTGAAAAAACTCGCTCGTATTTGCTTCGGACCATGATATCTATATTTAATGAATGTCAGTGAGAAATGTCTTTATTTCATTTGAAAATATCAGTGTTTGAACGTTTTCTTCTGAAACTTATTTACCTGCGAAAGTTTACTTAAAAATGGGAAATTTTGATTTTTTCATTCGTCACGTTACTCTTCCAAAATTTCAGAACTACGCAAAATTTTTTTCAAAAAAAAATATCCAGAATTTTTGGCAAGATCCTGCTGCTGACTCACATGTTTTTGCTATGGACAACAAGTTTTCTTGGTACCGTACACGCTACGGCGTAATCGCAGAAGAGAACTATTCTTCTTACGCAATGGATGTTTTCAAAACATTTATGTTTGCATTCACGTAACTATGCAGCAATTCTTCATTTACGCACTAACTATACATGAACAGAAATCGTATAAAATTCCAATAAAATTTTCACAACAAATCACTGAGCAATGGTGGACGAGAAAATAGTTTCCATGATTTTAGGCAACTCCGAGGTGTCTTTAAGCACAAACGCTTTTCCAGCAGGCAATTGGCTTTGAATCTCGTCAGCTTCGTTGCTGAGACTTCCAATGAGAATGACGAATGAATTGATTCCAGGGCGTCGAGTCATGACATCTTTGACTTTTCTTGGTTGGATGTTGTATCTGAACAATAAGAAAATTCAGTGAGAATTGTTGGTCAAAGTTTTACCTGCGCAAGTTAGCATCGGACACCAAGATAACCACTGTTTCGTCGAAATCGTCTTTTTTCACATTCAATTCGCATCCGGCCCATTCCAAACCTGCTACTGTATTATCACCGCTAGCACAATACTGGGAACAGAAAGTTTAAAATTTTGAGAATACATTTTTTTGTTACCTGTGTGTGAGCAATCATCCGTTTC</canonical>
            <polymorphic>CTCCAGACTCCTGACAATGGTCAAAATGACCAAAAATCTACTGAAAACATGCTTTTCTTAATCAGTCTGACCGGTACCGTACCTAATCCTGTGAAAAAACTCGCTCGTATTTGCTTCGGACCATGATATCTATATTTAATGAATGTCAGTGAGAAATGTCTTTATTTCATTTGAAAATATCAGTGTTTGAACGTTTTCTTCTGAAACTTATTTACCTGCGAAAGTTTACTTAAAAATGGGAAATTTTGATTTTTTCATTCGTCACGTTACTCTTCCAAAATTTCAGAACTACGCAAAATTTTTTTCAAAAAAAAATATCCAGAATTTTTGGCAAGATCCTGCTGCTGACTCACATGTTTTTGCTATGGACAACAAGTTTTCTTGGTACCGTACACGCTACGGCGTAATCGCAGAAGAGAACTATTCTTCTTACGCAATGGATGTTTTCAAAACATTTATGTTTGCATTCACGTAACTATGCAGCAATTCTTCATTTACGSACTAACTATACATGAACAGAAATCGTATAAAATTCCAATAAAATTTTCACAACAAATCACTGAGCAATGGTGGACGAGAAAATAGTTTCCATGATTTTAGGCAACTCCGAGGTGTCTTTAAGCACAAACGCTTTTCCAGCAGGCAATTGGCTTTGAATCTCGTCAGCTTCGTTGCTGAGACTTCCAATGAGAATGACGAATGAATTGATTCCAGGGCGTCGAGTCATGACATCTTTGACTTTTCTTGGTTGGATGTTGTATCTGAACAATAAGAAAATTCAGTGAGAATTGTTGGTCAAAGTTTTACCTGCGCAAGTTAGCATCGGACACCAAGATAACCACTGTTTCGTCGAAATCGTCTTTTTTCACATTCAATTCGCATCCGGCCCATTCCAAACCTGCTACTGTATTATCACCGCTAGCACAATACTGGGAACAGAAAGTTTAAAATTTTGAGAATACATTTTTTTGTTACCTGTGTGTGAGCAATCATCCGTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>160 93 88 79 76 58 56 48 47 45 42 42 34 31 27 16 13 12 10 10 9 2 2</canonical_bands>
                <polymorphic_bands>160 93 88 79 79 76 58 56 47 45 42 42 34 27 16 13 12 10 10 9 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTTGCTATGGACAACAAGT</pcr_primer_p1>
		<pcr_primer_p2>TGCCTAAAATCATGGAAACTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTTTTGCTATGGACAACAAGTTTTCTTGGTACCGTACACGCTACGGCGTAATCGCAGAAGAGAACTATTCTTCTTACGCAATGGATGTTTTCAAAACATTTATGTTTGCATTCACGTAACTATGCAGCAATTCTTCATTTACGCACTAACTATACATGAACAGAAATCGTATAAAATTCCAATAAAATTTTCACAACAAATCACTGAGCAATGGTGGACGAGAAAATAGTTTCCATGATTTTAGGCA</canonical_amplicon>
		<polymorphic_amplicon>GTTTTTGCTATGGACAACAAGTTTTCTTGGTACCGTACACGCTACGGCGTAATCGCAGAAGAGAACTATTCTTCTTACGCAATGGATGTTTTCAAAACATTTATGTTTGCATTCACGTAACTATGCAGCAATTCTTCATTTACGSACTAACTATACATGAACAGAAATCGTATAAAATTCCAATAAAATTTTCACAACAAATCACTGAGCAATGGTGGACGAGAAAATAGTTTCCATGATTTTAGGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14864</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>421060</contig_pos>
        <strand>+</strand>
        <context>TGCAACATTC[A/G]AACATAACCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGATTAATACAATTTGCGAACGTAGTATGCCTGGTTAGCTGCAACATTC</left_flank>
        <right_flank>AACATAACCAAAAGACTTGAAATTGAACTGATTTGTATGAAACATCCCTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTCCTCCTGCTCTTTTTCATTCGGTTTCCAATCAAAAATTGTCCAATTGAAACTGCTTGATGGCAATATCAGTCACGACCCTTGTTTTACACACTGTTTTATGTATTTCAGATTTTGATAGCGATGTTGGCAACGGGTGTCAACCACGTTTTGGCAGAATTGTTGTTGCAATAAATGGAGGAAAACTCATGGCGATAAGACAACACTCCTGGAATAGTTCTCTTTGGCACCATAAAAGTTTTTATCATGTTTTTGAGAACCAAGATGTTCTTTAGACCAAAAACTTTGCTCGGTCAGAAATCAAAAATGAAGAAATTCAGGTCAATAAAAAAAATGGATAACCAATCAAAGTAGCTCCAAACAAATTAAATATTGCTGTTGCGAGTTGAAAAACATTGAAGATAGTTCCATATATATATATATTACCTGGGTTTGTATGCAAACAATTTGATTAATACAATTTGCGAACGTAGTATGCCTGGTTAGCTGCAACATTCGAACATAACCAAAAGACTTGAAATTGAACTGATTTGTATGAAACATCCCTTTATCATGCGGAATTGAATTTCGATATAGTGCCTGTAATCTATATTTGATAGACCCAGAGCACCCGAACTACGAAAGCGATGAAAATAAACTTTTTCTCAATGAATACGTCCTTACTGACAAAAAAAAAACGGTGATTTGTGATTCTATTAGTGCTCTCCAGACATACTATCAAGGTGACAATGTCTTTATTCCTGGAGGTAACACATAAGTTAAAAATTAGACGATAATCCCATTGCAGCACTTATCAGTCCAGGTTTCAAGATGTTCACATGTTTCATTCGTGCATTATTTCAATAGTTTCTACTGTATTATTTGATCCATTTGTCTGATTAGTTTTTGATAGACCTAAAACATTCTCAAATTTCCCATTTTAATAACTTTTCTTTTTCCTGTTGTCTTCGCATTCAAAATTTCCAGTTTCAGTAAATGAATTGCCAACCAATTTAAAA</canonical>
            <polymorphic>ACCTCCTCCTGCTCTTTTTCATTCGGTTTCCAATCAAAAATTGTCCAATTGAAACTGCTTGATGGCAATATCAGTCACGACCCTTGTTTTACACACTGTTTTATGTATTTCAGATTTTGATAGCGATGTTGGCAACGGGTGTCAACCACGTTTTGGCAGAATTGTTGTTGCAATAAATGGAGGAAAACTCATGGCGATAAGACAACACTCCTGGAATAGTTCTCTTTGGCACCATAAAAGTTTTTATCATGTTTTTGAGAACCAAGATGTTCTTTAGACCAAAAACTTTGCTCGGTCAGAAATCAAAAATGAAGAAATTCAGGTCAATAAAAAAAATGGATAACCAATCAAAGTAGCTCCAAACAAATTAAATATTGCTGTTGCGAGTTGAAAAACATTGAAGATAGTTCCATATATATATATATTACCTGGGTTTGTATGCAAACAATTTGATTAATACAATTTGCGAACGTAGTATGCCTGGTTAGCTGCAACATTCRAACATAACCAAAAGACTTGAAATTGAACTGATTTGTATGAAACATCCCTTTATCATGCGGAATTGAATTTCGATATAGTGCCTGTAATCTATATTTGATAGACCCAGAGCACCCGAACTACGAAAGCGATGAAAATAAACTTTTTCTCAATGAATACGTCCTTACTGACAAAAAAAAAACGGTGATTTGTGATTCTATTAGTGCTCTCCAGACATACTATCAAGGTGACAATGTCTTTATTCCTGGAGGTAACACATAAGTTAAAAATTAGACGATAATCCCATTGCAGCACTTATCAGTCCAGGTTTCAAGATGTTCACATGTTTCATTCGTGCATTATTTCAATAGTTTCTACTGTATTATTTGATCCATTTGTCTGATTAGTTTTTGATAGACCTAAAACATTCTCAAATTTCCCATTTTAATAACTTTTCTTTTTCCTGTTGTCTTCGCATTCAAAATTTCCAGTTTCAGTAAATGAATTGCCAACCAATTTAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 429 72</canonical_bands>
                <polymorphic_bands>571 429</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGAAGAAATTCAGGTCAATAA</pcr_primer_p1>
		<pcr_primer_p2>CATGATAAAGGGATGTTTCATAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATGAAGAAATTCAGGTCAATAAAAAAAATGGATAACCAATCAAAGTAGCTCCAAACAAATTAAATATTGCTGTTGCGAGTTGAAAAACATTGAAGATAGTTCCATATATATATATATTACCTGGGTTTGTATGCAAACAATTTGATTAATACAATTTGCGAACGTAGTATGCCTGGTTAGCTGCAACATTCGAACATAACCAAAAGACTTGAAATTGAACTGATTTGTATGAAACATCCCTTTATCATG</canonical_amplicon>
		<polymorphic_amplicon>AATGAAGAAATTCAGGTCAATAAAAAAAATGGATAACCAATCAAAGTAGCTCCAAACAAATTAAATATTGCTGTTGCGAGTTGAAAAACATTGAAGATAGTTCCATATATATATATATTACCTGGGTTTGTATGCAAACAATTTGATTAATACAATTTGCGAACGTAGTATGCCTGGTTAGCTGCAACATTCRAACATAACCAAAAGACTTGAAATTGAACTGATTTGTATGAAACATCCCTTTATCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14865</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>420938</contig_pos>
        <strand>+</strand>
        <context>TTAAATATTG[A/C]TGTTGCGAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAAAAAAAATGGATAACCAATCAAAGTAGCTCCAAACAAATTAAATATTG</left_flank>
        <right_flank>TGTTGCGAGTTGAAAAACATTGAAGATAGTTCCATATATATATATATTAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCCTTCAGTAAGCACACCACCAATACCGCCAATCCGTCAGTCTGCACTCCGACGCTTATCATTTTTCCCTTTACAGAGACCAACCTCTCTGGCACACAATTTTGCTTTTTCCTCCCTCTCCACCTCCTCCTGCTCTTTTTCATTCGGTTTCCAATCAAAAATTGTCCAATTGAAACTGCTTGATGGCAATATCAGTCACGACCCTTGTTTTACACACTGTTTTATGTATTTCAGATTTTGATAGCGATGTTGGCAACGGGTGTCAACCACGTTTTGGCAGAATTGTTGTTGCAATAAATGGAGGAAAACTCATGGCGATAAGACAACACTCCTGGAATAGTTCTCTTTGGCACCATAAAAGTTTTTATCATGTTTTTGAGAACCAAGATGTTCTTTAGACCAAAAACTTTGCTCGGTCAGAAATCAAAAATGAAGAAATTCAGGTCAATAAAAAAAATGGATAACCAATCAAAGTAGCTCCAAACAAATTAAATATTGCTGTTGCGAGTTGAAAAACATTGAAGATAGTTCCATATATATATATATTACCTGGGTTTGTATGCAAACAATTTGATTAATACAATTTGCGAACGTAGTATGCCTGGTTAGCTGCAACATTCGAACATAACCAAAAGACTTGAAATTGAACTGATTTGTATGAAACATCCCTTTATCATGCGGAATTGAATTTCGATATAGTGCCTGTAATCTATATTTGATAGACCCAGAGCACCCGAACTACGAAAGCGATGAAAATAAACTTTTTCTCAATGAATACGTCCTTACTGACAAAAAAAAAACGGTGATTTGTGATTCTATTAGTGCTCTCCAGACATACTATCAAGGTGACAATGTCTTTATTCCTGGAGGTAACACATAAGTTAAAAATTAGACGATAATCCCATTGCAGCACTTATCAGTCCAGGTTTCAAGATGTTCACATGTTTCATTCGTGCATTATTTCAATAGTTTCTACTGTATTATTTGATCCATTTGTCT</canonical>
            <polymorphic>CGCCTTCAGTAAGCACACCACCAATACCGCCAATCCGTCAGTCTGCACTCCGACGCTTATCATTTTTCCCTTTACAGAGACCAACCTCTCTGGCACACAATTTTGCTTTTTCCTCCCTCTCCACCTCCTCCTGCTCTTTTTCATTCGGTTTCCAATCAAAAATTGTCCAATTGAAACTGCTTGATGGCAATATCAGTCACGACCCTTGTTTTACACACTGTTTTATGTATTTCAGATTTTGATAGCGATGTTGGCAACGGGTGTCAACCACGTTTTGGCAGAATTGTTGTTGCAATAAATGGAGGAAAACTCATGGCGATAAGACAACACTCCTGGAATAGTTCTCTTTGGCACCATAAAAGTTTTTATCATGTTTTTGAGAACCAAGATGTTCTTTAGACCAAAAACTTTGCTCGGTCAGAAATCAAAAATGAAGAAATTCAGGTCAATAAAAAAAATGGATAACCAATCAAAGTAGCTCCAAACAAATTAAATATTGMTGTTGCGAGTTGAAAAACATTGAAGATAGTTCCATATATATATATATTACCTGGGTTTGTATGCAAACAATTTGATTAATACAATTTGCGAACGTAGTATGCCTGGTTAGCTGCAACATTCGAACATAACCAAAAGACTTGAAATTGAACTGATTTGTATGAAACATCCCTTTATCATGCGGAATTGAATTTCGATATAGTGCCTGTAATCTATATTTGATAGACCCAGAGCACCCGAACTACGAAAGCGATGAAAATAAACTTTTTCTCAATGAATACGTCCTTACTGACAAAAAAAAAACGGTGATTTGTGATTCTATTAGTGCTCTCCAGACATACTATCAAGGTGACAATGTCTTTATTCCTGGAGGTAACACATAAGTTAAAAATTAGACGATAATCCCATTGCAGCACTTATCAGTCCAGGTTTCAAGATGTTCACATGTTTCATTCGTGCATTATTTCAATAGTTTCTACTGTATTATTTGATCCATTTGTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAAGAAATTCAGGTCAATAA</pcr_primer_p1>
		<pcr_primer_p2>CATGATAAAGGGATGTTTCATAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATGAAGAAATTCAGGTCAATAAAAAAAATGGATAACCAATCAAAGTAGCTCCAAACAAATTAAATATTGCTGTTGCGAGTTGAAAAACATTGAAGATAGTTCCATATATATATATATTACCTGGGTTTGTATGCAAACAATTTGATTAATACAATTTGCGAACGTAGTATGCCTGGTTAGCTGCAACATTCGAACATAACCAAAAGACTTGAAATTGAACTGATTTGTATGAAACATCCCTTTATCATG</canonical_amplicon>
		<polymorphic_amplicon>AATGAAGAAATTCAGGTCAATAAAAAAAATGGATAACCAATCAAAGTAGCTCCAAACAAATTAAATATTGMTGTTGCGAGTTGAAAAACATTGAAGATAGTTCCATATATATATATATTACCTGGGTTTGTATGCAAACAATTTGATTAATACAATTTGCGAACGTAGTATGCCTGGTTAGCTGCAACATTCGAACATAACCAAAAGACTTGAAATTGAACTGATTTGTATGAAACATCCCTTTATCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14866</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>420790</contig_pos>
        <strand>+</strand>
        <context>TTCTCTTTGG[A/C]ACCATAAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAGGAAAACTCATGGCGATAAGACAACACTCCTGGAATAGTTCTCTTTGG</left_flank>
        <right_flank>ACCATAAAAGTTTTTATCATGTTTTTGAGAACCAAGATGTTCTTTAGACC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTACTGAAGGTAAACTTGAGAATCGACGATAGATTGAAAGATAGCAATAGGGAAAGGAATTAATAAAAATATACCTAGAGCAAAAACTAAGAGAATAACGGCGGCTAGAATAATTGTCACAAATAACCTCATCTTGTACCAGTAGTCGCCTTCAGTAAGCACACCACCAATACCGCCAATCCGTCAGTCTGCACTCCGACGCTTATCATTTTTCCCTTTACAGAGACCAACCTCTCTGGCACACAATTTTGCTTTTTCCTCCCTCTCCACCTCCTCCTGCTCTTTTTCATTCGGTTTCCAATCAAAAATTGTCCAATTGAAACTGCTTGATGGCAATATCAGTCACGACCCTTGTTTTACACACTGTTTTATGTATTTCAGATTTTGATAGCGATGTTGGCAACGGGTGTCAACCACGTTTTGGCAGAATTGTTGTTGCAATAAATGGAGGAAAACTCATGGCGATAAGACAACACTCCTGGAATAGTTCTCTTTGGCACCATAAAAGTTTTTATCATGTTTTTGAGAACCAAGATGTTCTTTAGACCAAAAACTTTGCTCGGTCAGAAATCAAAAATGAAGAAATTCAGGTCAATAAAAAAAATGGATAACCAATCAAAGTAGCTCCAAACAAATTAAATATTGCTGTTGCGAGTTGAAAAACATTGAAGATAGTTCCATATATATATATATTACCTGGGTTTGTATGCAAACAATTTGATTAATACAATTTGCGAACGTAGTATGCCTGGTTAGCTGCAACATTCGAACATAACCAAAAGACTTGAAATTGAACTGATTTGTATGAAACATCCCTTTATCATGCGGAATTGAATTTCGATATAGTGCCTGTAATCTATATTTGATAGACCCAGAGCACCCGAACTACGAAAGCGATGAAAATAAACTTTTTCTCAATGAATACGTCCTTACTGACAAAAAAAAAACGGTGATTTGTGATTCTATTAGTGCTCTCCAGACATACTATCAAGGTGACA</canonical>
            <polymorphic>ACTTACTGAAGGTAAACTTGAGAATCGACGATAGATTGAAAGATAGCAATAGGGAAAGGAATTAATAAAAATATACCTAGAGCAAAAACTAAGAGAATAACGGCGGCTAGAATAATTGTCACAAATAACCTCATCTTGTACCAGTAGTCGCCTTCAGTAAGCACACCACCAATACCGCCAATCCGTCAGTCTGCACTCCGACGCTTATCATTTTTCCCTTTACAGAGACCAACCTCTCTGGCACACAATTTTGCTTTTTCCTCCCTCTCCACCTCCTCCTGCTCTTTTTCATTCGGTTTCCAATCAAAAATTGTCCAATTGAAACTGCTTGATGGCAATATCAGTCACGACCCTTGTTTTACACACTGTTTTATGTATTTCAGATTTTGATAGCGATGTTGGCAACGGGTGTCAACCACGTTTTGGCAGAATTGTTGTTGCAATAAATGGAGGAAAACTCATGGCGATAAGACAACACTCCTGGAATAGTTCTCTTTGGMACCATAAAAGTTTTTATCATGTTTTTGAGAACCAAGATGTTCTTTAGACCAAAAACTTTGCTCGGTCAGAAATCAAAAATGAAGAAATTCAGGTCAATAAAAAAAATGGATAACCAATCAAAGTAGCTCCAAACAAATTAAATATTGCTGTTGCGAGTTGAAAAACATTGAAGATAGTTCCATATATATATATATTACCTGGGTTTGTATGCAAACAATTTGATTAATACAATTTGCGAACGTAGTATGCCTGGTTAGCTGCAACATTCGAACATAACCAAAAGACTTGAAATTGAACTGATTTGTATGAAACATCCCTTTATCATGCGGAATTGAATTTCGATATAGTGCCTGTAATCTATATTTGATAGACCCAGAGCACCCGAACTACGAAAGCGATGAAAATAAACTTTTTCTCAATGAATACGTCCTTACTGACAAAAAAAAAACGGTGATTTGTGATTCTATTAGTGCTCTCCAGACATACTATCAAGGTGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>349 121 76 73 59 48 46 42 31 27 26 24 24 16 12 7 7 3 3 2 2 2</canonical_bands>
                <polymorphic_bands>373 121 76 73 59 48 46 42 31 27 26 24 16 12 7 7 3 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTGTTTTACACACTGTTTTATG</pcr_primer_p1>
		<pcr_primer_p2>TTTATTGACCTGAATTTCTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTTGTTTTACACACTGTTTTATGTATTTCAGATTTTGATAGCGATGTTGGCAACGGGTGTCAACCACGTTTTGGCAGAATTGTTGTTGCAATAAATGGAGGAAAACTCATGGCGATAAGACAACACTCCTGGAATAGTTCTCTTTGGCACCATAAAAGTTTTTATCATGTTTTTGAGAACCAAGATGTTCTTTAGACCAAAAACTTTGCTCGGTCAGAAATCAAAAATGAAGAAATTCAGGTCAATAAA</canonical_amplicon>
		<polymorphic_amplicon>CCTTGTTTTACACACTGTTTTATGTATTTCAGATTTTGATAGCGATGTTGGCAACGGGTGTCAACCACGTTTTGGCAGAATTGTTGTTGCAATAAATGGAGGAAAACTCATGGCGATAAGACAACACTCCTGGAATAGTTCTCTTTGGMACCATAAAAGTTTTTATCATGTTTTTGAGAACCAAGATGTTCTTTAGACCAAAAACTTTGCTCGGTCAGAAATCAAAAATGAAGAAATTCAGGTCAATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14867</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>461681</contig_pos>
        <strand>+</strand>
        <context>AATCAGTTGC[G/T]CCGTATGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACTAGGAGTTCGAGCTCAGCTTCTCCTTGATGGACAACCAATCAGTTGC</left_flank>
        <right_flank>CCGTATGTTTGATTCTCCTAGTTTTTTGATGAAATTTATTGATTTTGTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACTATTGGAGGACAAGTCGAAGTACTTGAGGTAGGTATTGGTCATTAACTGAATTTGAATAGCTTTTAATTCAGAGTTTGAAAAAATTCTCGCTCAAGCAAAACTGATGATTTTCAAAATACTTTGTCAAAAAATATAATCACGAAAATCCATTGAGCATGTGAATATTTGAATAAGTATCCCTAATTTCCTTTGTAATAGCTCTTCCATATTTAAAATTGTTAATTTACGAAATCTGAATGTCATTGCAGGACTTCCCTGGAGACTTCTCCATCTACTTGGAGCTCAAGAACACCGCCAAGAAAAATACCGTACCAGAGAAATGCGTTAGACAGCCAGAAAACGGATGTGGAGGATTTGGATCCTGGTAAGCATCATCTGAGTTGTGCAGATTTTACCCTTGAACTTTCAGCTTGTACTGCAACGCCTGTGAAACATTTGGGGACAAACTAGGAGTTCGAGCTCAGCTTCTCCTTGATGGACAACCAATCAGTTGCTCCGTATGTTTGATTCTCCTAGTTTTTTGATGAAATTTATTGATTTTGTTCAGGATGGATTGAAGAAAGGAAGCTACAACAACTTGAAACTTGCTTTCTGCCTTCCAGACATTGACGACGTAATTAGCTCTCAGGGACTTAGCAAGGAATCATTCTTGCAATTGATCCAAGCTGATGTGAGTTGAATCTAAAATTCAAAGATTCATATTTTGCTTTTTTCCAGGATGGAAACCATGTTCGTGCTATGGGAATCTTTGCCACTGTCTACGTTTTCGACTCTGACGTCAGTAAACAAATGTCAACCCAAATTAAAATCGAGGGAGTTTACCGTAGAACCAAGTACAGCTTCTTCAAAGACCAACCACTCCCGGCTGAGGTCTACTGGTCCCTTCCATTTAACCAGATGCTCAAAAATCAACAGAGCTACGTTGCTTGCCATAAGATCTATGGAAACTTGAAGGTCAACCGAAAATAATTTTATGACACATTTTTGATTATTTG</canonical>
            <polymorphic>TCACTATTGGAGGACAAGTCGAAGTACTTGAGGTAGGTATTGGTCATTAACTGAATTTGAATAGCTTTTAATTCAGAGTTTGAAAAAATTCTCGCTCAAGCAAAACTGATGATTTTCAAAATACTTTGTCAAAAAATATAATCACGAAAATCCATTGAGCATGTGAATATTTGAATAAGTATCCCTAATTTCCTTTGTAATAGCTCTTCCATATTTAAAATTGTTAATTTACGAAATCTGAATGTCATTGCAGGACTTCCCTGGAGACTTCTCCATCTACTTGGAGCTCAAGAACACCGCCAAGAAAAATACCGTACCAGAGAAATGCGTTAGACAGCCAGAAAACGGATGTGGAGGATTTGGATCCTGGTAAGCATCATCTGAGTTGTGCAGATTTTACCCTTGAACTTTCAGCTTGTACTGCAACGCCTGTGAAACATTTGGGGACAAACTAGGAGTTCGAGCTCAGCTTCTCCTTGATGGACAACCAATCAGTTGCKCCGTATGTTTGATTCTCCTAGTTTTTTGATGAAATTTATTGATTTTGTTCAGGATGGATTGAAGAAAGGAAGCTACAACAACTTGAAACTTGCTTTCTGCCTTCCAGACATTGACGACGTAATTAGCTCTCAGGGACTTAGCAAGGAATCATTCTTGCAATTGATCCAAGCTGATGTGAGTTGAATCTAAAATTCAAAGATTCATATTTTGCTTTTTTCCAGGATGGAAACCATGTTCGTGCTATGGGAATCTTTGCCACTGTCTACGTTTTCGACTCTGACGTCAGTAAACAAATGTCAACCCAAATTAAAATCGAGGGAGTTTACCGTAGAACCAAGTACAGCTTCTTCAAAGACCAACCACTCCCGGCTGAGGTCTACTGGTCCCTTCCATTTAACCAGATGCTCAAAAATCAACAGAGCTACGTTGCTTGCCATAAGATCTATGGAAACTTGAAGGTCAACCGAAAATAATTTTATGACACATTTTTGATTATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATACCGTACCAGAGAAATG</pcr_primer_p1>
		<pcr_primer_p2>CATCCTGAACAAAATCAATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAATACCGTACCAGAGAAATGCGTTAGACAGCCAGAAAACGGATGTGGAGGATTTGGATCCTGGTAAGCATCATCTGAGTTGTGCAGATTTTACCCTTGAACTTTCAGCTTGTACTGCAACGCCTGTGAAACATTTGGGGACAAACTAGGAGTTCGAGCTCAGCTTCTCCTTGATGGACAACCAATCAGTTGCTCCGTATGTTTGATTCTCCTAGTTTTTTGATGAAATTTATTGATTTTGTTCAGGATG</canonical_amplicon>
		<polymorphic_amplicon>AAAATACCGTACCAGAGAAATGCGTTAGACAGCCAGAAAACGGATGTGGAGGATTTGGATCCTGGTAAGCATCATCTGAGTTGTGCAGATTTTACCCTTGAACTTTCAGCTTGTACTGCAACGCCTGTGAAACATTTGGGGACAAACTAGGAGTTCGAGCTCAGCTTCTCCTTGATGGACAACCAATCAGTTGCKCCGTATGTTTGATTCTCCTAGTTTTTTGATGAAATTTATTGATTTTGTTCAGGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14868</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>463781</contig_pos>
        <strand>+</strand>
        <context>TTAGCATTCA[C/G]ATTTCCAGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AACCCAAAACAAAACCGGAAATTTCTACTAAAATTCCAATTTAGCATTCA</left_flank>
        <right_flank>ATTTCCAGCAAAAACGTCGCCCATCTTTAAAGTCAGCGTCCCCTTTCTCT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACTGTTTTAATCATGAAATCAAGTCAAGTATGCCTAGGGGAAATTACTGGAAAGTCCTTTTATGTTTACTGGCGGTTGTCACTGAATTTGAGCAATCGATCGTTATCTGTTGTTTTACAACACAATATGAATGTCACAACATGATTTATTCGATTAGATTGCTCGGTGAATAGGCAAGTAATTATTTTTGTTTCCCAGGAGATGCTAGATAAGATACTGTGAAAGATGATCTGAAAATCTAGAAATTTTAAATTTTCATCCGCAACTGCTCGAAATTCACAACTTAAATTCCGAAATGGAACAAAGACATGCATACTTGATGTTCCAGTTGAACACTGAACATTAAGAGAACATTAAAGTCGTGTCGAACTAGTTTTCATCATCAATTTTGCTTTTTTCAGCTTCCTTTATGCAAATTCATGAGATGTTTCAGTGGTCAACAGCAACAACCCAAAACAAAACCGGAAATTTCTACTAAAATTCCAATTTAGCATTCAGATTTCCAGCAAAAACGTCGCCCATCTTTAAAGTCAGCGTCCCCTTTCTCTTTTGTGCTTTGACAATTCCATTGTTTGCCTCATTCTCATTTGACGATTCGAAATAAGAAAATGTGAAACGTTAGAAAAAACGAAGAAGAAATAGAAGAAGCGATGAGTGGAATAGTATGACGTAGACAGTCGCCATACAAAGGAAAAAGCAATTGATACCAGCTTTCTTGAACTTCTCCTCTCCTCATTGTTCTGTTCCCTCGTTTTGTCCTCGTTTACTCGTATACAGCTTTACACTATTTTACTTCAATTGTGTAAAACCTATGATCAACCTATTCAACTTTTGGACTTTTGACACAAATCACGGAAAATTCTACACTATCCTAACAGCATTATTGGAAAAAGTTCAACTTCCATGAACGAACGTTCAAAGTATTTAGCCAGCTAGAAGAACGGCTAGAGGCTACATCAAGATATAGACAATTAAAAATACTACATATGTTGAATGAA</canonical>
            <polymorphic>TAACTGTTTTAATCATGAAATCAAGTCAAGTATGCCTAGGGGAAATTACTGGAAAGTCCTTTTATGTTTACTGGCGGTTGTCACTGAATTTGAGCAATCGATCGTTATCTGTTGTTTTACAACACAATATGAATGTCACAACATGATTTATTCGATTAGATTGCTCGGTGAATAGGCAAGTAATTATTTTTGTTTCCCAGGAGATGCTAGATAAGATACTGTGAAAGATGATCTGAAAATCTAGAAATTTTAAATTTTCATCCGCAACTGCTCGAAATTCACAACTTAAATTCCGAAATGGAACAAAGACATGCATACTTGATGTTCCAGTTGAACACTGAACATTAAGAGAACATTAAAGTCGTGTCGAACTAGTTTTCATCATCAATTTTGCTTTTTTCAGCTTCCTTTATGCAAATTCATGAGATGTTTCAGTGGTCAACAGCAACAACCCAAAACAAAACCGGAAATTTCTACTAAAATTCCAATTTAGCATTCASATTTCCAGCAAAAACGTCGCCCATCTTTAAAGTCAGCGTCCCCTTTCTCTTTTGTGCTTTGACAATTCCATTGTTTGCCTCATTCTCATTTGACGATTCGAAATAAGAAAATGTGAAACGTTAGAAAAAACGAAGAAGAAATAGAAGAAGCGATGAGTGGAATAGTATGACGTAGACAGTCGCCATACAAAGGAAAAAGCAATTGATACCAGCTTTCTTGAACTTCTCCTCTCCTCATTGTTCTGTTCCCTCGTTTTGTCCTCGTTTACTCGTATACAGCTTTACACTATTTTACTTCAATTGTGTAAAACCTATGATCAACCTATTCAACTTTTGGACTTTTGACACAAATCACGGAAAATTCTACACTATCCTAACAGCATTATTGGAAAAAGTTCAACTTCCATGAACGAACGTTCAAAGTATTTAGCCAGCTAGAAGAACGGCTAGAGGCTACATCAAGATATAGACAATTAAAAATACTACATATGTTGAATGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>501 234 205 60</canonical_bands>
                <polymorphic_bands>706 234 60</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGAACTAGTTTTCATCATCAAT</pcr_primer_p1>
		<pcr_primer_p2>TTCACATTTTCTTATTTCGAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCGAACTAGTTTTCATCATCAATTTTGCTTTTTTCAGCTTCCTTTATGCAAATTCATGAGATGTTTCAGTGGTCAACAGCAACAACCCAAAACAAAACCGGAAATTTCTACTAAAATTCCAATTTAGCATTCAGATTTCCAGCAAAAACGTCGCCCATCTTTAAAGTCAGCGTCCCCTTTCTCTTTTGTGCTTTGACAATTCCATTGTTTGCCTCATTCTCATTTGACGATTCGAAATAAGAAAATGTGAA</canonical_amplicon>
		<polymorphic_amplicon>TCGAACTAGTTTTCATCATCAATTTTGCTTTTTTCAGCTTCCTTTATGCAAATTCATGAGATGTTTCAGTGGTCAACAGCAACAACCCAAAACAAAACCGGAAATTTCTACTAAAATTCCAATTTAGCATTCASATTTCCAGCAAAAACGTCGCCCATCTTTAAAGTCAGCGTCCCCTTTCTCTTTTGTGCTTTGACAATTCCATTGTTTGCCTCATTCTCATTTGACGATTCGAAATAAGAAAATGTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14869</snp_id>
        <super_contig>c008201344.Contig1</super_contig>
        <contig_pos>16952</contig_pos>
        <strand>+</strand>
        <context>TGGGGAGAGG[A/G]TGTGGTATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAATTGGCGGTGGAGGTTAATTTGGAATAGGCATCTGTATGGGGAGAGG</left_flank>
        <right_flank>TGTGGTATAAAAAGTGTCAAATCGAATTCAAATTGAATGAAACAAAACGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCCAGATTTGGGGACTTGGGACGGGACATTAGAAAAAAAATACATTAATGAAATATGAACTTTTTACAAGTATCGTTCATGAGATAATCTAGCCACTCTAGATGTGTTATAGCTCAAATGATGAACCCTAAATTTTAGGATTTGTAAAGCTCTTGACTAGAATCAAAACACAGTCACAACTTCTAACCCAGAGAGGACACATACAAAATCAGCGAACGCCACTTGAAACTTGCGCTGATCACCTGAGAAAACCTTTTCCTATTTCACATTCCTCAGAGACGCTGAGAAGTAGAAACAAATAAGAAGTAAAAAGAAACTTAATGTTGTCACCTTCTTTTGCGCCTAACTTCCATTCATTTTCTCTTACTTGATTATTGTCGAAAGTGTCGGTTGTTTATCCAATACCTCTTACATTTTATGATATGGAAGGGAAGACAAAAAAAGAAGGCTAATTGGCGGTGGAGGTTAATTTGGAATAGGCATCTGTATGGGGAGAGGGTGTGGTATAAAAAGTGTCAAATCGAATTCAAATTGAATGAAACAAAACGAAATGATGAAAAGACAGAAGAAGACGAAGAAACCCCACGCCATTCCTAAACATTCTTCGAAGAGAGAGATTTCGAGAAAAAAAGAAGATAAGAAAAGCGTCGTGTTGCCATAGAAGGCGTCGAAAGCCTTGTTTAAATGATGATAGAAAAAAGAAGAAGAAGAAGACGAAAGACAACAAACCGCCCGTCCTCACTGGCCTAGTCCCGGCGACAAAGTTTGCAAGAACGGGGGGAGGCCCATTATACAATGATTCATTTCACGCTAGTATCTTCTCAACGATTCAATTTGGTTTCGTCTCTATTCAGGTCCAGAAAAAAACGGAACGCTGGATGTGTTGGAATGAATGGGCATGACGAATTGAGACGAGAATTATGGAGGAAAATGTGGATATGTCATCCAAGTAGATATACTTTGTCATAAAGACATTTCAAGATCAAAGTTTGCAGAAGT</canonical>
            <polymorphic>TCCCAGATTTGGGGACTTGGGACGGGACATTAGAAAAAAAATACATTAATGAAATATGAACTTTTTACAAGTATCGTTCATGAGATAATCTAGCCACTCTAGATGTGTTATAGCTCAAATGATGAACCCTAAATTTTAGGATTTGTAAAGCTCTTGACTAGAATCAAAACACAGTCACAACTTCTAACCCAGAGAGGACACATACAAAATCAGCGAACGCCACTTGAAACTTGCGCTGATCACCTGAGAAAACCTTTTCCTATTTCACATTCCTCAGAGACGCTGAGAAGTAGAAACAAATAAGAAGTAAAAAGAAACTTAATGTTGTCACCTTCTTTTGCGCCTAACTTCCATTCATTTTCTCTTACTTGATTATTGTCGAAAGTGTCGGTTGTTTATCCAATACCTCTTACATTTTATGATATGGAAGGGAAGACAAAAAAAGAAGGCTAATTGGCGGTGGAGGTTAATTTGGAATAGGCATCTGTATGGGGAGAGGRTGTGGTATAAAAAGTGTCAAATCGAATTCAAATTGAATGAAACAAAACGAAATGATGAAAAGACAGAAGAAGACGAAGAAACCCCACGCCATTCCTAAACATTCTTCGAAGAGAGAGATTTCGAGAAAAAAAGAAGATAAGAAAAGCGTCGTGTTGCCATAGAAGGCGTCGAAAGCCTTGTTTAAATGATGATAGAAAAAAGAAGAAGAAGAAGACGAAAGACAACAAACCGCCCGTCCTCACTGGCCTAGTCCCGGCGACAAAGTTTGCAAGAACGGGGGGAGGCCCATTATACAATGATTCATTTCACGCTAGTATCTTCTCAACGATTCAATTTGGTTTCGTCTCTATTCAGGTCCAGAAAAAAACGGAACGCTGGATGTGTTGGAATGAATGGGCATGACGAATTGAGACGAGAATTATGGAGGAAAATGTGGATATGTCATCCAAGTAGATATACTTTGTCATAAAGACATTTCAAGATCAAAGTTTGCAGAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>96 89 75 75 70 67 67 64 64 63 57 52 40 25 23 22 20 12 11 6 2</canonical_bands>
                <polymorphic_bands>96 89 75 75 70 67 67 64 64 63 57 52 42 25 23 22 20 12 11 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTAATGTTGTCACCTTCTTTTG</pcr_primer_p1>
		<pcr_primer_p2>TTCTTCTGTCTTTTCATCATTTC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CTTAATGTTGTCACCTTCTTTTGCGCCTAACTTCCATTCATTTTCTCTTACTTGATTATTGTCGAAAGTGTCGGTTGTTTATCCAATACCTCTTACATTTTATGATATGGAAGGGAAGACAAAAAAAGAAGGCTAATTGGCGGTGGAGGTTAATTTGGAATAGGCATCTGTATGGGGAGAGGGTGTGGTATAAAAAGTGTCAAATCGAATTCAAATTGAATGAAACAAAACGAAATGATGAAAAGACAGAAGAA</canonical_amplicon>
		<polymorphic_amplicon>CTTAATGTTGTCACCTTCTTTTGCGCCTAACTTCCATTCATTTTCTCTTACTTGATTATTGTCGAAAGTGTCGGTTGTTTATCCAATACCTCTTACATTTTATGATATGGAAGGGAAGACAAAAAAAGAAGGCTAATTGGCGGTGGAGGTTAATTTGGAATAGGCATCTGTATGGGGAGAGGRTGTGGTATAAAAAGTGTCAAATCGAATTCAAATTGAATGAAACAAAACGAAATGATGAAAAGACAGAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14870</snp_id>
        <super_contig>c008201344.Contig1</super_contig>
        <contig_pos>28705</contig_pos>
        <strand>+</strand>
        <context>AGTTGTATCC[A/G]GGTCTTCTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATCGTAATCATCTTTGTTCTGGTCATTATTTTGAATCGTAGTTGTATCC</left_flank>
        <right_flank>GGTCTTCTAGAGCCTGTTGGAATGGATTTCGGCGGTCGGGAACAAATGGT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTCACATTGCTGTTATGAAATCGGTTCAGTTTTTCAAATTTAGACTTTTTTCTCGCGGGTTTTATTGGATAATAGTTTTATTTTGTATCTAAATCGATTTCAATCGAGCGTTTTTTTGGGTCATACAAACATAACCTCAATAAATGTTTGTGTTTATTTTAAGGTGTTGATTCAGCATAATTTGACATTTGACAGTAAAATTTAGGATTTAAATTGAACAATATTCTTAAATGAAATGCAAATGAAAATCAGAAATGAAAAGGAAATACATCTAGGCCAATCTCGACATAATATCCACAGCTAATTGTCGAATTGCAAGATCTGGAGATGCAAGAACTATTTGAGAAACTGCTGGAAGAAAATCTGGAAGGTGCTCGCGGAGCAAGTTATCAGCAACATAACGGAGAGGAATCAGACAAATGTCACGATGTGCAGCTAGACGAGTCTCATCGTAATCATCTTTGTTCTGGTCATTATTTTGAATCGTAGTTGTATCCGGGTCTTCTAGAGCCTGTTGGAATGGATTTCGGCGGTCGGGAACAAATGGTTTCAAACGATCACGATGCTTGTCATATTCTGAAATTCAAAAACATTTTTAAATTTTTCACATGCTACACCAACCGCTCAACGCATCGTCTACAAAATCTTGGGAAACCAGTCGATATGCATTTTCTTCTCCATTTTCCACAGGAACCAGGTGGTACATCTGAACAGACCAGTTCAACGATTTCTTATAGATTTTTGATATTTACTGTAATCGCATGCTCTCTGCATACAAGAGCACTTCTTCTTGTGCTCACTTCGAATTCTACACTCTTCAAGTCAATACTTCTCGATTTAACCAATTTTGCGATCTCTTCGAGATGTCCTTGTTTTCTGAAAAGAAAAATGGATAAAAGGAAAAAAATTGCAATTAATACAAACTTGGTTCTCTCAAATCTTCTCAACAAACTTATCGTTCTGATCAAATTCGAACTGACGAGAATTTTCAAAAGGTT</canonical>
            <polymorphic>TCCTCACATTGCTGTTATGAAATCGGTTCAGTTTTTCAAATTTAGACTTTTTTCTCGCGGGTTTTATTGGATAATAGTTTTATTTTGTATCTAAATCGATTTCAATCGAGCGTTTTTTTGGGTCATACAAACATAACCTCAATAAATGTTTGTGTTTATTTTAAGGTGTTGATTCAGCATAATTTGACATTTGACAGTAAAATTTAGGATTTAAATTGAACAATATTCTTAAATGAAATGCAAATGAAAATCAGAAATGAAAAGGAAATACATCTAGGCCAATCTCGACATAATATCCACAGCTAATTGTCGAATTGCAAGATCTGGAGATGCAAGAACTATTTGAGAAACTGCTGGAAGAAAATCTGGAAGGTGCTCGCGGAGCAAGTTATCAGCAACATAACGGAGAGGAATCAGACAAATGTCACGATGTGCAGCTAGACGAGTCTCATCGTAATCATCTTTGTTCTGGTCATTATTTTGAATCGTAGTTGTATCCRGGTCTTCTAGAGCCTGTTGGAATGGATTTCGGCGGTCGGGAACAAATGGTTTCAAACGATCACGATGCTTGTCATATTCTGAAATTCAAAAACATTTTTAAATTTTTCACATGCTACACCAACCGCTCAACGCATCGTCTACAAAATCTTGGGAAACCAGTCGATATGCATTTTCTTCTCCATTTTCCACAGGAACCAGGTGGTACATCTGAACAGACCAGTTCAACGATTTCTTATAGATTTTTGATATTTACTGTAATCGCATGCTCTCTGCATACAAGAGCACTTCTTCTTGTGCTCACTTCGAATTCTACACTCTTCAAGTCAATACTTCTCGATTTAACCAATTTTGCGATCTCTTCGAGATGTCCTTGTTTTCTGAAAAGAAAAATGGATAAAAGGAAAAAAATTGCAATTAATACAAACTTGGTTCTCTCAAATCTTCTCAACAAACTTATCGTTCTGATCAAATTCGAACTGACGAGAATTTTCAAAAGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTCTCATCGTAATCATCTTTG</pcr_primer_p1>
		<pcr_primer_p2>GTGGAAAATGGAGAAGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAGTCTCATCGTAATCATCTTTGTTCTGGTCATTATTTTGAATCGTAGTTGTATCCGGGTCTTCTAGAGCCTGTTGGAATGGATTTCGGCGGTCGGGAACAAATGGTTTCAAACGATCACGATGCTTGTCATATTCTGAAATTCAAAAACATTTTTAAATTTTTCACATGCTACACCAACCGCTCAACGCATCGTCTACAAAATCTTGGGAAACCAGTCGATATGCATTTTCTTCTCCATTTTCCAC</canonical_amplicon>
		<polymorphic_amplicon>GAGTCTCATCGTAATCATCTTTGTTCTGGTCATTATTTTGAATCGTAGTTGTATCCRGGTCTTCTAGAGCCTGTTGGAATGGATTTCGGCGGTCGGGAACAAATGGTTTCAAACGATCACGATGCTTGTCATATTCTGAAATTCAAAAACATTTTTAAATTTTTCACATGCTACACCAACCGCTCAACGCATCGTCTACAAAATCTTGGGAAACCAGTCGATATGCATTTTCTTCTCCATTTTCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14871</snp_id>
        <super_contig>c008201344.Contig1</super_contig>
        <contig_pos>56332</contig_pos>
        <strand>+</strand>
        <context>CATTACGCTC[A/T]AGCCAACAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAGAAGGTGACTAAAGAAGAACTCTTGGATGTGTTCATGCATTACGCTC</left_flank>
        <right_flank>AGCCAACAACCCCTATTTTGTGGAGGAAGATGATTTCAACAAAGTGATGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCATTGTTTTCCATTCTATCAAAGACGAGAAACTACGAAAATCGCTCAGCGACGTGGCGAACAAAGTAGACAAGTGTAAGATTCCAACGTTCAAAGCCGAACAAGGTTGGTTATGAAAATATTGACACCTTACTAGTTGAGACTATTCCAGAATTGTTCTTCGCTTCGATGCAACCGTCCGAAAACATCCCGAATTTTGCGAAATGCATGCATAAAGTATTATTAACTGTTTTTAAATACATGCTTTTCAATCATAATAATTCAGACTGATTTGATAGTGTGCTACTTTCGACGGGAACTCGAAGCAAAAAACTGGAAGAACGTCAGGTATATAAGGTATGGATAAGTAGAATCCCATAATGTACAATTTTAGGGACCTCATCGCTCTTCATCCGAAATTTGTGCCTCTTTATGAACATGTTGACGAATTTTTGAAAGTTGCGAAACATCAGAAGGTGACTAAAGAAGAACTCTTGGATGTGTTCATGCATTACGCTCAAGCCAACAACCCCTATTTTGTGGAGGAAGATGATTTCAACAAAGTGATGAAAATAGTTTTCAAATCATATAATGTGACTGTCTCGGATACAGTATCTGACATGAATACTGTTAAGAAAACTTACATTTCTGTGAAAGAAGCATCACTTCTGAAAAAGGCAATTGATGAGTATGTTTATAACTCCAAAGAGGGATTCGTCAAATCAAAAGAATACGAAAAAGTCGCGGTTCGAGTCCGGGAATGGAAAAAGGCTAGGAAACTGAAAGATGGCAAGAATGTGGTTGTGGTGGATTCACTCAATTTCGGAGTAGGTCGCGATCCTGTCGAATGGAATGATATTTCGAATCAGTTCCAACATGTTTTATTTGCTACTCGTTATCCTCCATCATTAGTGAGAGATAAAGTTATCAAGCGATATGATGGAAACGCTCTCTTTTGTGATAAACTGTTAGTATTAACATGGTTCAGAGCTGTTGTTTAGGAATTACATTAAAGTTTTC</canonical>
            <polymorphic>GGCATTGTTTTCCATTCTATCAAAGACGAGAAACTACGAAAATCGCTCAGCGACGTGGCGAACAAAGTAGACAAGTGTAAGATTCCAACGTTCAAAGCCGAACAAGGTTGGTTATGAAAATATTGACACCTTACTAGTTGAGACTATTCCAGAATTGTTCTTCGCTTCGATGCAACCGTCCGAAAACATCCCGAATTTTGCGAAATGCATGCATAAAGTATTATTAACTGTTTTTAAATACATGCTTTTCAATCATAATAATTCAGACTGATTTGATAGTGTGCTACTTTCGACGGGAACTCGAAGCAAAAAACTGGAAGAACGTCAGGTATATAAGGTATGGATAAGTAGAATCCCATAATGTACAATTTTAGGGACCTCATCGCTCTTCATCCGAAATTTGTGCCTCTTTATGAACATGTTGACGAATTTTTGAAAGTTGCGAAACATCAGAAGGTGACTAAAGAAGAACTCTTGGATGTGTTCATGCATTACGCTCWAGCCAACAACCCCTATTTTGTGGAGGAAGATGATTTCAACAAAGTGATGAAAATAGTTTTCAAATCATATAATGTGACTGTCTCGGATACAGTATCTGACATGAATACTGTTAAGAAAACTTACATTTCTGTGAAAGAAGCATCACTTCTGAAAAAGGCAATTGATGAGTATGTTTATAACTCCAAAGAGGGATTCGTCAAATCAAAAGAATACGAAAAAGTCGCGGTTCGAGTCCGGGAATGGAAAAAGGCTAGGAAACTGAAAGATGGCAAGAATGTGGTTGTGGTGGATTCACTCAATTTCGGAGTAGGTCGCGATCCTGTCGAATGGAATGATATTTCGAATCAGTTCCAACATGTTTTATTTGCTACTCGTTATCCTCCATCATTAGTGAGAGATAAAGTTATCAAGCGATATGATGGAAACGCTCTCTTTTGTGATAAACTGTTAGTATTAACATGGTTCAGAGCTGTTGTTTAGGAATTACATTAAAGTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACATCAGAAGGTGACTAAAGA</pcr_primer_p1>
		<pcr_primer_p2>ATCCCTCTTTGGAGTTATAAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACATCAGAAGGTGACTAAAGAAGAACTCTTGGATGTGTTCATGCATTACGCTCAAGCCAACAACCCCTATTTTGTGGAGGAAGATGATTTCAACAAAGTGATGAAAATAGTTTTCAAATCATATAATGTGACTGTCTCGGATACAGTATCTGACATGAATACTGTTAAGAAAACTTACATTTCTGTGAAAGAAGCATCACTTCTGAAAAAGGCAATTGATGAGTATGTTTATAACTCCAAAGAGGGAT</canonical_amplicon>
		<polymorphic_amplicon>AAACATCAGAAGGTGACTAAAGAAGAACTCTTGGATGTGTTCATGCATTACGCTCWAGCCAACAACCCCTATTTTGTGGAGGAAGATGATTTCAACAAAGTGATGAAAATAGTTTTCAAATCATATAATGTGACTGTCTCGGATACAGTATCTGACATGAATACTGTTAAGAAAACTTACATTTCTGTGAAAGAAGCATCACTTCTGAAAAAGGCAATTGATGAGTATGTTTATAACTCCAAAGAGGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14872</snp_id>
        <super_contig>c008201344.Contig1</super_contig>
        <contig_pos>63112</contig_pos>
        <strand>+</strand>
        <context>CAGCTTTTCC[G/T]TCTCCTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGGATTTCTACCCAGATCACAGGTCTAAAATATAGGTTTCAGCTTTTCC</left_flank>
        <right_flank>TCTCCTTTTCTGATTTTTCTTCTTTGTTATGATATTTCTTTCCATCTTCT</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATTCATGTCCTTTGGCTGAATTGTTATTTTGCACTCATCGTATTCTCCGGACCTTGTCCTTAAGGAAAAGTAATATTTTGGAACTCTTAAACGTCATCTTGATAGAGAATACTTTAAGTGAAAAGATGGCACAAAAAAGGAGTAGACCCACTATTTCAATGGCAGCCCTCCTCGTTCTAGGCCAACGGAATCAAGAAATTACCGGAGCGTTGCCAGACAACTATTGATGCTAATGGACGTTACTTTCATTGATCTAGCTCCCTCCGCATTGAGAAAAATTTGATCAAAAGTTTTGCCAAAAAAGAAAGAAACTTTCTTTCCAACCTAATCCTAATTCTTAGCTTTTCTAATCGAAGAACGAAAATTTCTTTTCTGATTGAATAGAAAAGGAAATCGGATTGCGGAAGTGTTTACGCATCAGTGATAAGGATTGGAGAACTTTGCAATTGGATTTCTACCCAGATCACAGGTCTAAAATATAGGTTTCAGCTTTTCCTTCTCCTTTTCTGATTTTTCTTCTTTGTTATGATATTTCTTTCCATCTTCTTCTGTCCACAGATTTTCTCTCATCTATATCTTGTTTCTTCTATAGTTTCTACTCGTCATGAACGCGGAACAAAAAATTCAGAATAGTAGTAAATAAGTTGATAAACCGTTCAACGTTACAGCGAAAAAATACAACGAGAATAGAGGCGAAACGAAGGGCAGAAACCAAAATCAGACGGAGAGATGACGACGATACGGACACGGAACGGATTGTGGCTTTTAGTGGTTTTTACAGTTTCCGTTGCATTTGGAAATGCTGAAATATTGGAGGGTGCACCACCGTATGTTCTAACTCGGTTCTTTATACCGTAAAACCTCTTCTATTTTTCCGAGTCCCTCTCAGAGAGCCCTTCTATTAGAGGGGCCTTTCTAATAAAGGGGCCCTTCTACTAAAGTCGCCCTTCTAATAAAGGTTTTACGGTTATCCTTTGCCGTTGAAGTATTAATAAAC</canonical>
            <polymorphic>CAAATTCATGTCCTTTGGCTGAATTGTTATTTTGCACTCATCGTATTCTCCGGACCTTGTCCTTAAGGAAAAGTAATATTTTGGAACTCTTAAACGTCATCTTGATAGAGAATACTTTAAGTGAAAAGATGGCACAAAAAAGGAGTAGACCCACTATTTCAATGGCAGCCCTCCTCGTTCTAGGCCAACGGAATCAAGAAATTACCGGAGCGTTGCCAGACAACTATTGATGCTAATGGACGTTACTTTCATTGATCTAGCTCCCTCCGCATTGAGAAAAATTTGATCAAAAGTTTTGCCAAAAAAGAAAGAAACTTTCTTTCCAACCTAATCCTAATTCTTAGCTTTTCTAATCGAAGAACGAAAATTTCTTTTCTGATTGAATAGAAAAGGAAATCGGATTGCGGAAGTGTTTACGCATCAGTGATAAGGATTGGAGAACTTTGCAATTGGATTTCTACCCAGATCACAGGTCTAAAATATAGGTTTCAGCTTTTCCKTCTCCTTTTCTGATTTTTCTTCTTTGTTATGATATTTCTTTCCATCTTCTTCTGTCCACAGATTTTCTCTCATCTATATCTTGTTTCTTCTATAGTTTCTACTCGTCATGAACGCGGAACAAAAAATTCAGAATAGTAGTAAATAAGTTGATAAACCGTTCAACGTTACAGCGAAAAAATACAACGAGAATAGAGGCGAAACGAAGGGCAGAAACCAAAATCAGACGGAGAGATGACGACGATACGGACACGGAACGGATTGTGGCTTTTAGTGGTTTTTACAGTTTCCGTTGCATTTGGAAATGCTGAAATATTGGAGGGTGCACCACCGTATGTTCTAACTCGGTTCTTTATACCGTAAAACCTCTTCTATTTTTCCGAGTCCCTCTCAGAGAGCCCTTCTATTAGAGGGGCCTTTCTAATAAAGGGGCCCTTCTACTAAAGTCGCCCTTCTAATAAAGGTTTTACGGTTATCCTTTGCCGTTGAAGTATTAATAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGATAAGGATTGGAGAACTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGAACGGTTTATCAACTTATTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>AGTGATAAGGATTGGAGAACTTTGCAATTGGATTTCTACCCAGATCACAGGTCTAAAATATAGGTTTCAGCTTTTCCTTCTCCTTTTCTGATTTTTCTTCTTTGTTATGATATTTCTTTCCATCTTCTTCTGTCCACAGATTTTCTCTCATCTATATCTTGTTTCTTCTATAGTTTCTACTCGTCATGAACGCGGAACAAAAAATTCAGAATAGTAGTAAATAAGTTGATAAACCGTTCAA</canonical_amplicon>
		<polymorphic_amplicon>AGTGATAAGGATTGGAGAACTTTGCAATTGGATTTCTACCCAGATCACAGGTCTAAAATATAGGTTTCAGCTTTTCCKTCTCCTTTTCTGATTTTTCTTCTTTGTTATGATATTTCTTTCCATCTTCTTCTGTCCACAGATTTTCTCTCATCTATATCTTGTTTCTTCTATAGTTTCTACTCGTCATGAACGCGGAACAAAAAATTCAGAATAGTAGTAAATAAGTTGATAAACCGTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14873</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>41984</contig_pos>
        <strand>+</strand>
        <context>ATTTGAAAAT[A/G]CATACTGCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTGATATTTAACACAAAACACCGCACACTGTACACCGACATTTGAAAAT</left_flank>
        <right_flank>CATACTGCAACTCTAAAAAACTCCGAAAAATCTCTTGTCTTCTTCTTTAA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTCTATTAGAGTGTTTGCGGTAATTATAGTAAGGTTTAAAGACATAAAATAGTTTTTACACATTTTTCAAGCATTTTTAAAATTATTTTTCCTCAAAGTTGGACTTTCGAAATTGCAATTTAAAATGTCAAATTTTCAATTCTTTTCTGTTTCAACTAAATTTGAGTAAACAATAAATATACCACTGATAATTTTCGAATTCAAAAAAAAACTTTTTAGGAAAATTACCATTTCAAACAGTTTTTTTTAAATGTCACTCTTTTTGAAATGAGTTCGGGATATGCATCATTATACTCTCTTTACTACTCTTTTCTACTAAATTTTCTCGGTAGAATCATATTTTACGGTAATTGTAGTTAACGGAGGGTGGTTAGGAGAGTGGTCTGGAAATATATTTACCGTTTCGGGGGAAAATTATGACTTTAAAGATTCAAAAGTTTTTTGATTGGTGATATTTAACACAAAACACCGCACACTGTACACCGACATTTGAAAATGCATACTGCAACTCTAAAAAACTCCGAAAAATCTCTTGTCTTCTTCTTTAAAGAAATCAAATCATGAAAAATAATACTTACAGTTTCAGGAAAATCAGAAAACTTTTAGAATGGGAAATGTATGTAGTGCTTCTTTTTTTTTGCCGGGCCTAGGCGGGCCCTGCCATAATTTCTTTCAGAATCAATACTTTCGAACCAACTAAATTAGATATGATAGAGCTCCACGAGTACTTCAAAAAGGTATTATTTAAAATACTGTATCTTATCTATGAACAAAGTTACAGATCATAAAGTGGCTTTTCTCGCAGGGCCCGGAAGCCCGGGGCGGGCCTGCTTTTTTTTGTTCTTTTTGCTCTGTAACTCTGTTCATAGACAAGATACAGTATTCCAAATAATACCGTTTTGTAGTACTCGTGGAGCTCTATCATATCTGATTGAGTTGGTTCGAAAACATTGATTCTGAAAGAAGTTATGGCAGGGCTCGCGAAAGCCCGGCAAAGG</canonical>
            <polymorphic>CGTTCTATTAGAGTGTTTGCGGTAATTATAGTAAGGTTTAAAGACATAAAATAGTTTTTACACATTTTTCAAGCATTTTTAAAATTATTTTTCCTCAAAGTTGGACTTTCGAAATTGCAATTTAAAATGTCAAATTTTCAATTCTTTTCTGTTTCAACTAAATTTGAGTAAACAATAAATATACCACTGATAATTTTCGAATTCAAAAAAAAACTTTTTAGGAAAATTACCATTTCAAACAGTTTTTTTTAAATGTCACTCTTTTTGAAATGAGTTCGGGATATGCATCATTATACTCTCTTTACTACTCTTTTCTACTAAATTTTCTCGGTAGAATCATATTTTACGGTAATTGTAGTTAACGGAGGGTGGTTAGGAGAGTGGTCTGGAAATATATTTACCGTTTCGGGGGAAAATTATGACTTTAAAGATTCAAAAGTTTTTTGATTGGTGATATTTAACACAAAACACCGCACACTGTACACCGACATTTGAAAATRCATACTGCAACTCTAAAAAACTCCGAAAAATCTCTTGTCTTCTTCTTTAAAGAAATCAAATCATGAAAAATAATACTTACAGTTTCAGGAAAATCAGAAAACTTTTAGAATGGGAAATGTATGTAGTGCTTCTTTTTTTTTGCCGGGCCTAGGCGGGCCCTGCCATAATTTCTTTCAGAATCAATACTTTCGAACCAACTAAATTAGATATGATAGAGCTCCACGAGTACTTCAAAAAGGTATTATTTAAAATACTGTATCTTATCTATGAACAAAGTTACAGATCATAAAGTGGCTTTTCTCGCAGGGCCCGGAAGCCCGGGGCGGGCCTGCTTTTTTTTGTTCTTTTTGCTCTGTAACTCTGTTCATAGACAAGATACAGTATTCCAAATAATACCGTTTTGTAGTACTCGTGGAGCTCTATCATATCTGATTGAGTTGGTTCGAAAACATTGATTCTGAAAGAAGTTATGGCAGGGCTCGCGAAAGCCCGGCAAAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATGCAT</site>
                <isoschizomers>
                    <enzyme>BfrBI</enzyme>
                    <enzyme>EcoT22I</enzyme>
                    <enzyme>Mph1103I</enzyme>
                    <enzyme>NsiI</enzyme>
                    <enzyme>Ppu10I</enzyme>
                    <enzyme>Zsp2I</enzyme>
                </isoschizomers>
                <canonical_bands>500 285 215</canonical_bands>
                <polymorphic_bands>715 285</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>493 215 168 117 7</canonical_bands>
                <polymorphic_bands>493 222 168 117</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGGAGAGTGGTCTGGAAATA</pcr_primer_p1>
		<pcr_primer_p2>ATTTCCCATTCTAAAAGTTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTAGGAGAGTGGTCTGGAAATATATTTACCGTTTCGGGGGAAAATTATGACTTTAAAGATTCAAAAGTTTTTTGATTGGTGATATTTAACACAAAACACCGCACACTGTACACCGACATTTGAAAATGCATACTGCAACTCTAAAAAACTCCGAAAAATCTCTTGTCTTCTTCTTTAAAGAAATCAAATCATGAAAAATAATACTTACAGTTTCAGGAAAATCAGAAAACTTTTAGAATGGGAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTAGGAGAGTGGTCTGGAAATATATTTACCGTTTCGGGGGAAAATTATGACTTTAAAGATTCAAAAGTTTTTTGATTGGTGATATTTAACACAAAACACCGCACACTGTACACCGACATTTGAAAATRCATACTGCAACTCTAAAAAACTCCGAAAAATCTCTTGTCTTCTTCTTTAAAGAAATCAAATCATGAAAAATAATACTTACAGTTTCAGGAAAATCAGAAAACTTTTAGAATGGGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14874</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>67853</contig_pos>
        <strand>+</strand>
        <context>GACCAGCCTA[G/T]CTATATGTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTGATCCTTTTTCTAATTGCTGGACTTGTAAGCACTGCGACCAGCCTA</left_flank>
        <right_flank>CTATATGTTCCGTTCGACACGAGGTGATAGGATGTCTTTGGACTTGTATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACTAATCGCTTCCGGAAAATTAGAAAATATCACTGAAAATCTCTGAAAATCGAAGAAAATTGAAGAAAATTACAGAAAAAGCGGAAAAACGGGTCCATGAGTTTTCATGACGATTCGCATATTTTATCACAGCTGGGAAGTGAGTCTACCTGAAAATGAAAAATTAAAAAATTGAAATTTTTAGTCTTGGATTCGCACGAGCGCAGTCCCAAGCGAGACACTGCGCCAACAGACAAAAAATTCGTGGATGTAAAGCTGACGGCGTCGGTTTCAGATGACGATGAGGACGATGATGAGGATTTGGTCTTTGACAGAGTAAAAATTCCTTTAAAATCCAAAAAATAATAAATTTTTGCTTCCAGAACAACCTGTTATCCTCCAACAAACGACAGAATGCTTCACTAATTCGAGGGAGAGCTGATAATCAAACAATTCGATTTCTGATTCTTTTGATCCTTTTTCTAATTGCTGGACTTGTAAGCACTGCGACCAGCCTATCTATATGTTCCGTTCGACACGAGGTGATAGGATGTCTTTGGACTTGTATTGGAATGTTTTGTGGCGCTTGGGCTAGTGAGTTTTTCGAAAAAATTTAAAATTTCAGCCAAATTCAAATTTCCAGCCAAGCTCACCGCTTCCCGGTCAAATCTGATGCTGTTCCTACTCGCAACCCTTCTCACTCTCCTTGTCAATCTGTTTTTCGCTTTTAGCTTCTCATTTCTGTTCGCTCTCCGCGGATTTTTCGTCGGAGCCACCTTGTATGGTGGAGCTCTCGTTTGGTTCGCTTTCTGGAGGAAACAACCAAGGAAATTGCTTATTTTGCTGTTGGTATTTTCCGCTGGAGGTCTGCTAGCAATGTCTGTGAAAACTAGCGTGTTTTCCGGTGAGATTTGGTTAAAATTCGAGAAAATCGAGAAAAAAAACCGAATTTTTTATTTTTAGTTTTTTTCACTGATTTTTTCCAGGAACATTTTGAAAAACCTTTAAAAAAGCTCAAA</canonical>
            <polymorphic>CAACTAATCGCTTCCGGAAAATTAGAAAATATCACTGAAAATCTCTGAAAATCGAAGAAAATTGAAGAAAATTACAGAAAAAGCGGAAAAACGGGTCCATGAGTTTTCATGACGATTCGCATATTTTATCACAGCTGGGAAGTGAGTCTACCTGAAAATGAAAAATTAAAAAATTGAAATTTTTAGTCTTGGATTCGCACGAGCGCAGTCCCAAGCGAGACACTGCGCCAACAGACAAAAAATTCGTGGATGTAAAGCTGACGGCGTCGGTTTCAGATGACGATGAGGACGATGATGAGGATTTGGTCTTTGACAGAGTAAAAATTCCTTTAAAATCCAAAAAATAATAAATTTTTGCTTCCAGAACAACCTGTTATCCTCCAACAAACGACAGAATGCTTCACTAATTCGAGGGAGAGCTGATAATCAAACAATTCGATTTCTGATTCTTTTGATCCTTTTTCTAATTGCTGGACTTGTAAGCACTGCGACCAGCCTAKCTATATGTTCCGTTCGACACGAGGTGATAGGATGTCTTTGGACTTGTATTGGAATGTTTTGTGGCGCTTGGGCTAGTGAGTTTTTCGAAAAAATTTAAAATTTCAGCCAAATTCAAATTTCCAGCCAAGCTCACCGCTTCCCGGTCAAATCTGATGCTGTTCCTACTCGCAACCCTTCTCACTCTCCTTGTCAATCTGTTTTTCGCTTTTAGCTTCTCATTTCTGTTCGCTCTCCGCGGATTTTTCGTCGGAGCCACCTTGTATGGTGGAGCTCTCGTTTGGTTCGCTTTCTGGAGGAAACAACCAAGGAAATTGCTTATTTTGCTGTTGGTATTTTCCGCTGGAGGTCTGCTAGCAATGTCTGTGAAAACTAGCGTGTTTTCCGGTGAGATTTGGTTAAAATTCGAGAAAATCGAGAAAAAAAACCGAATTTTTTATTTTTAGTTTTTTTCACTGATTTTTTCCAGGAACATTTTGAAAAACCTTTAAAAAAGCTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTGATCCTTTTTCTAATTG</pcr_primer_p1>
		<pcr_primer_p2>AGATTGACAAGGAGAGTGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTGATCCTTTTTCTAATTGCTGGACTTGTAAGCACTGCGACCAGCCTATCTATATGTTCCGTTCGACACGAGGTGATAGGATGTCTTTGGACTTGTATTGGAATGTTTTGTGGCGCTTGGGCTAGTGAGTTTTTCGAAAAAATTTAAAATTTCAGCCAAATTCAAATTTCCAGCCAAGCTCACCGCTTCCCGGTCAAATCTGATGCTGTTCCTACTCGCAACCCTTCTCACTCTCCTTGTCAATCT</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTGATCCTTTTTCTAATTGCTGGACTTGTAAGCACTGCGACCAGCCTAKCTATATGTTCCGTTCGACACGAGGTGATAGGATGTCTTTGGACTTGTATTGGAATGTTTTGTGGCGCTTGGGCTAGTGAGTTTTTCGAAAAAATTTAAAATTTCAGCCAAATTCAAATTTCCAGCCAAGCTCACCGCTTCCCGGTCAAATCTGATGCTGTTCCTACTCGCAACCCTTCTCACTCTCCTTGTCAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14875</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>67950</contig_pos>
        <strand>+</strand>
        <context>GAAAAAATTT[A/T]AAATTTCAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATTGGAATGTTTTGTGGCGCTTGGGCTAGTGAGTTTTTCGAAAAAATTT</left_flank>
        <right_flank>AAATTTCAGCCAAATTCAAATTTCCAGCCAAGCTCACCGCTTCCCGGTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGAGTTTTCATGACGATTCGCATATTTTATCACAGCTGGGAAGTGAGTCTACCTGAAAATGAAAAATTAAAAAATTGAAATTTTTAGTCTTGGATTCGCACGAGCGCAGTCCCAAGCGAGACACTGCGCCAACAGACAAAAAATTCGTGGATGTAAAGCTGACGGCGTCGGTTTCAGATGACGATGAGGACGATGATGAGGATTTGGTCTTTGACAGAGTAAAAATTCCTTTAAAATCCAAAAAATAATAAATTTTTGCTTCCAGAACAACCTGTTATCCTCCAACAAACGACAGAATGCTTCACTAATTCGAGGGAGAGCTGATAATCAAACAATTCGATTTCTGATTCTTTTGATCCTTTTTCTAATTGCTGGACTTGTAAGCACTGCGACCAGCCTATCTATATGTTCCGTTCGACACGAGGTGATAGGATGTCTTTGGACTTGTATTGGAATGTTTTGTGGCGCTTGGGCTAGTGAGTTTTTCGAAAAAATTTAAAATTTCAGCCAAATTCAAATTTCCAGCCAAGCTCACCGCTTCCCGGTCAAATCTGATGCTGTTCCTACTCGCAACCCTTCTCACTCTCCTTGTCAATCTGTTTTTCGCTTTTAGCTTCTCATTTCTGTTCGCTCTCCGCGGATTTTTCGTCGGAGCCACCTTGTATGGTGGAGCTCTCGTTTGGTTCGCTTTCTGGAGGAAACAACCAAGGAAATTGCTTATTTTGCTGTTGGTATTTTCCGCTGGAGGTCTGCTAGCAATGTCTGTGAAAACTAGCGTGTTTTCCGGTGAGATTTGGTTAAAATTCGAGAAAATCGAGAAAAAAAACCGAATTTTTTATTTTTAGTTTTTTTCACTGATTTTTTCCAGGAACATTTTGAAAAACCTTTAAAAAAGCTCAAAAAAAGCATTTAAAATCGCGAAACATTGAAATTTGGCATTGAAAACTACCCGTAACGTCATTTTTCGGCTTTTACATCCTTTTAGAACTACAGTAATC</canonical>
            <polymorphic>CATGAGTTTTCATGACGATTCGCATATTTTATCACAGCTGGGAAGTGAGTCTACCTGAAAATGAAAAATTAAAAAATTGAAATTTTTAGTCTTGGATTCGCACGAGCGCAGTCCCAAGCGAGACACTGCGCCAACAGACAAAAAATTCGTGGATGTAAAGCTGACGGCGTCGGTTTCAGATGACGATGAGGACGATGATGAGGATTTGGTCTTTGACAGAGTAAAAATTCCTTTAAAATCCAAAAAATAATAAATTTTTGCTTCCAGAACAACCTGTTATCCTCCAACAAACGACAGAATGCTTCACTAATTCGAGGGAGAGCTGATAATCAAACAATTCGATTTCTGATTCTTTTGATCCTTTTTCTAATTGCTGGACTTGTAAGCACTGCGACCAGCCTATCTATATGTTCCGTTCGACACGAGGTGATAGGATGTCTTTGGACTTGTATTGGAATGTTTTGTGGCGCTTGGGCTAGTGAGTTTTTCGAAAAAATTTWAAATTTCAGCCAAATTCAAATTTCCAGCCAAGCTCACCGCTTCCCGGTCAAATCTGATGCTGTTCCTACTCGCAACCCTTCTCACTCTCCTTGTCAATCTGTTTTTCGCTTTTAGCTTCTCATTTCTGTTCGCTCTCCGCGGATTTTTCGTCGGAGCCACCTTGTATGGTGGAGCTCTCGTTTGGTTCGCTTTCTGGAGGAAACAACCAAGGAAATTGCTTATTTTGCTGTTGGTATTTTCCGCTGGAGGTCTGCTAGCAATGTCTGTGAAAACTAGCGTGTTTTCCGGTGAGATTTGGTTAAAATTCGAGAAAATCGAGAAAAAAAACCGAATTTTTTATTTTTAGTTTTTTTCACTGATTTTTTCCAGGAACATTTTGAAAAACCTTTAAAAAAGCTCAAAAAAAGCATTTAAAATCGCGAAACATTGAAATTTGGCATTGAAAACTACCCGTAACGTCATTTTTCGGCTTTTACATCCTTTTAGAACTACAGTAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>391 265 234 87 23</canonical_bands>
                <polymorphic_bands>656 234 87 23</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>302 265 164 89 88 69 23</canonical_bands>
                <polymorphic_bands>567 164 89 88 69 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTGATCCTTTTTCTAATTG</pcr_primer_p1>
		<pcr_primer_p2>AGATTGACAAGGAGAGTGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTGATCCTTTTTCTAATTGCTGGACTTGTAAGCACTGCGACCAGCCTATCTATATGTTCCGTTCGACACGAGGTGATAGGATGTCTTTGGACTTGTATTGGAATGTTTTGTGGCGCTTGGGCTAGTGAGTTTTTCGAAAAAATTTAAAATTTCAGCCAAATTCAAATTTCCAGCCAAGCTCACCGCTTCCCGGTCAAATCTGATGCTGTTCCTACTCGCAACCCTTCTCACTCTCCTTGTCAATCT</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTGATCCTTTTTCTAATTGCTGGACTTGTAAGCACTGCGACCAGCCTATCTATATGTTCCGTTCGACACGAGGTGATAGGATGTCTTTGGACTTGTATTGGAATGTTTTGTGGCGCTTGGGCTAGTGAGTTTTTCGAAAAAATTTWAAATTTCAGCCAAATTCAAATTTCCAGCCAAGCTCACCGCTTCCCGGTCAAATCTGATGCTGTTCCTACTCGCAACCCTTCTCACTCTCCTTGTCAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14876</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>67994</contig_pos>
        <strand></strand>
        <context>TCACCGCTTC[C/T]YGGTCAAATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTTAAAATTTCAGCCAAATTCAAATTTCCAGCCAAGCTCACCGCTTC</left_flank>
        <right_flank>CGGTCAAATCTGATGCTGTTCCTACTCGCAACCCTTCTCACTCTCCTTGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGAGTCTACCTGAAAATGAAAAATTAAAAAATTGAAATTTTTAGTCTTGGATTCGCACGAGCGCAGTCCCAAGCGAGACACTGCGCCAACAGACAAAAAATTCGTGGATGTAAAGCTGACGGCGTCGGTTTCAGATGACGATGAGGACGATGATGAGGATTTGGTCTTTGACAGAGTAAAAATTCCTTTAAAATCCAAAAAATAATAAATTTTTGCTTCCAGAACAACCTGTTATCCTCCAACAAACGACAGAATGCTTCACTAATTCGAGGGAGAGCTGATAATCAAACAATTCGATTTCTGATTCTTTTGATCCTTTTTCTAATTGCTGGACTTGTAAGCACTGCGACCAGCCTATCTATATGTTCCGTTCGACACGAGGTGATAGGATGTCTTTGGACTTGTATTGGAATGTTTTGTGGCGCTTGGGCTAGTGAGTTTTTCGAAAAAATTTAAAATTTCAGCCAAATTCAAATTTCCAGCCAAGCTCACCGCTTCCCGGTCAAATCTGATGCTGTTCCTACTCGCAACCCTTCTCACTCTCCTTGTCAATCTGTTTTTCGCTTTTAGCTTCTCATTTCTGTTCGCTCTCCGCGGATTTTTCGTCGGAGCCACCTTGTATGGTGGAGCTCTCGTTTGGTTCGCTTTCTGGAGGAAACAACCAAGGAAATTGCTTATTTTGCTGTTGGTATTTTCCGCTGGAGGTCTGCTAGCAATGTCTGTGAAAACTAGCGTGTTTTCCGGTGAGATTTGGTTAAAATTCGAGAAAATCGAGAAAAAAAACCGAATTTTTTATTTTTAGTTTTTTTCACTGATTTTTTCCAGGAACATTTTGAAAAACCTTTAAAAAAGCTCAAAAAAAGCATTTAAAATCGCGAAACATTGAAATTTGGCATTGAAAACTACCCGTAACGTCATTTTTCGGCTTTTACATCCTTTTAGAACTACAGTAATCCGAAATTTTTGAAAATTTGGCCATAAATTTATTGTTTCCAGATT</canonical>
            <polymorphic>GTGAGTCTACCTGAAAATGAAAAATTAAAAAATTGAAATTTTTAGTCTTGGATTCGCACGAGCGCAGTCCCAAGCGAGACACTGCGCCAACAGACAAAAAATTCGTGGATGTAAAGCTGACGGCGTCGGTTTCAGATGACGATGAGGACGATGATGAGGATTTGGTCTTTGACAGAGTAAAAATTCCTTTAAAATCCAAAAAATAATAAATTTTTGCTTCCAGAACAACCTGTTATCCTCCAACAAACGACAGAATGCTTCACTAATTCGAGGGAGAGCTGATAATCAAACAATTCGATTTCTGATTCTTTTGATCCTTTTTCTAATTGCTGGACTTGTAAGCACTGCGACCAGCCTATCTATATGTTCCGTTCGACACGAGGTGATAGGATGTCTTTGGACTTGTATTGGAATGTTTTGTGGCGCTTGGGCTAGTGAGTTTTTCGAAAAAATTTAAAATTTCAGCCAAATTCAAATTTCCAGCCAAGCTCACCGCTTCYCGGTCAAATCTGATGCTGTTCCTACTCGCAACCCTTCTCACTCTCCTTGTCAATCTGTTTTTCGCTTTTAGCTTCTCATTTCTGTTCGCTCTCCGCGGATTTTTCGTCGGAGCCACCTTGTATGGTGGAGCTCTCGTTTGGTTCGCTTTCTGGAGGAAACAACCAAGGAAATTGCTTATTTTGCTGTTGGTATTTTCCGCTGGAGGTCTGCTAGCAATGTCTGTGAAAACTAGCGTGTTTTCCGGTGAGATTTGGTTAAAATTCGAGAAAATCGAGAAAAAAAACCGAATTTTTTATTTTTAGTTTTTTTCACTGATTTTTTCCAGGAACATTTTGAAAAACCTTTAAAAAAGCTCAAAAAAAGCATTTAAAATCGCGAAACATTGAAATTTGGCATTGAAAACTACCCGTAACGTCATTTTTCGGCTTTTACATCCTTTTAGAACTACAGTAATCCGAAATTTTTGAAAATTTGGCCATAAATTTATTGTTTCCAGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>500 324 176</canonical_bands>
                <polymorphic_bands>824 176</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 258 242</canonical_bands>
                <polymorphic_bands>742 258</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTGATCCTTTTTCTAATTG</pcr_primer_p1>
		<pcr_primer_p2>AGATTGACAAGGAGAGTGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTGATCCTTTTTCTAATTGCTGGACTTGTAAGCACTGCGACCAGCCTATCTATATGTTCCGTTCGACACGAGGTGATAGGATGTCTTTGGACTTGTATTGGAATGTTTTGTGGCGCTTGGGCTAGTGAGTTTTTCGAAAAAATTTAAAATTTCAGCCAAATTCAAATTTCCAGCCAAGCTCACCGCTTCCCGGTCAAATCTGATGCTGTTCCTACTCGCAACCCTTCTCACTCTCCTTGTCAATCT</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTGATCCTTTTTCTAATTGCTGGACTTGTAAGCACTGCGACCAGCCTATCTATATGTTCCGTTCGACACGAGGTGATAGGATGTCTTTGGACTTGTATTGGAATGTTTTGTGGCGCTTGGGCTAGTGAGTTTTTCGAAAAAATTTAAAATTTCAGCCAAATTCAAATTTCCAGCCAAGCTCACCGCTTCYCGGTCAAATCTGATGCTGTTCCTACTCGCAACCCTTCTCACTCTCCTTGTCAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14877</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>68055</contig_pos>
        <strand>+</strand>
        <context>CAATCTGTTT[C/T]TCGCTTTTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGATGCTGTTCCTACTCGCAACCCTTCTCACTCTCCTTGTCAATCTGTTT</left_flank>
        <right_flank>TCGCTTTTAGCTTCTCATTTCTGTTCGCTCTCCGCGGATTTTTCGTCGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGCAGTCCCAAGCGAGACACTGCGCCAACAGACAAAAAATTCGTGGATGTAAAGCTGACGGCGTCGGTTTCAGATGACGATGAGGACGATGATGAGGATTTGGTCTTTGACAGAGTAAAAATTCCTTTAAAATCCAAAAAATAATAAATTTTTGCTTCCAGAACAACCTGTTATCCTCCAACAAACGACAGAATGCTTCACTAATTCGAGGGAGAGCTGATAATCAAACAATTCGATTTCTGATTCTTTTGATCCTTTTTCTAATTGCTGGACTTGTAAGCACTGCGACCAGCCTATCTATATGTTCCGTTCGACACGAGGTGATAGGATGTCTTTGGACTTGTATTGGAATGTTTTGTGGCGCTTGGGCTAGTGAGTTTTTCGAAAAAATTTAAAATTTCAGCCAAATTCAAATTTCCAGCCAAGCTCACCGCTTCCCGGTCAAATCTGATGCTGTTCCTACTCGCAACCCTTCTCACTCTCCTTGTCAATCTGTTTTTCGCTTTTAGCTTCTCATTTCTGTTCGCTCTCCGCGGATTTTTCGTCGGAGCCACCTTGTATGGTGGAGCTCTCGTTTGGTTCGCTTTCTGGAGGAAACAACCAAGGAAATTGCTTATTTTGCTGTTGGTATTTTCCGCTGGAGGTCTGCTAGCAATGTCTGTGAAAACTAGCGTGTTTTCCGGTGAGATTTGGTTAAAATTCGAGAAAATCGAGAAAAAAAACCGAATTTTTTATTTTTAGTTTTTTTCACTGATTTTTTCCAGGAACATTTTGAAAAACCTTTAAAAAAGCTCAAAAAAAGCATTTAAAATCGCGAAACATTGAAATTTGGCATTGAAAACTACCCGTAACGTCATTTTTCGGCTTTTACATCCTTTTAGAACTACAGTAATCCGAAATTTTTGAAAATTTGGCCATAAATTTATTGTTTCCAGATTCTGAGAGTAATTTTCACAAATACCCTAATTTGATAAGATTTTCATATTGATTTCGGGTTAC</canonical>
            <polymorphic>GCGCAGTCCCAAGCGAGACACTGCGCCAACAGACAAAAAATTCGTGGATGTAAAGCTGACGGCGTCGGTTTCAGATGACGATGAGGACGATGATGAGGATTTGGTCTTTGACAGAGTAAAAATTCCTTTAAAATCCAAAAAATAATAAATTTTTGCTTCCAGAACAACCTGTTATCCTCCAACAAACGACAGAATGCTTCACTAATTCGAGGGAGAGCTGATAATCAAACAATTCGATTTCTGATTCTTTTGATCCTTTTTCTAATTGCTGGACTTGTAAGCACTGCGACCAGCCTATCTATATGTTCCGTTCGACACGAGGTGATAGGATGTCTTTGGACTTGTATTGGAATGTTTTGTGGCGCTTGGGCTAGTGAGTTTTTCGAAAAAATTTAAAATTTCAGCCAAATTCAAATTTCCAGCCAAGCTCACCGCTTCCCGGTCAAATCTGATGCTGTTCCTACTCGCAACCCTTCTCACTCTCCTTGTCAATCTGTTTYTCGCTTTTAGCTTCTCATTTCTGTTCGCTCTCCGCGGATTTTTCGTCGGAGCCACCTTGTATGGTGGAGCTCTCGTTTGGTTCGCTTTCTGGAGGAAACAACCAAGGAAATTGCTTATTTTGCTGTTGGTATTTTCCGCTGGAGGTCTGCTAGCAATGTCTGTGAAAACTAGCGTGTTTTCCGGTGAGATTTGGTTAAAATTCGAGAAAATCGAGAAAAAAAACCGAATTTTTTATTTTTAGTTTTTTTCACTGATTTTTTCCAGGAACATTTTGAAAAACCTTTAAAAAAGCTCAAAAAAAGCATTTAAAATCGCGAAACATTGAAATTTGGCATTGAAAACTACCCGTAACGTCATTTTTCGGCTTTTACATCCTTTTAGAACTACAGTAATCCGAAATTTTTGAAAATTTGGCCATAAATTTATTGTTTCCAGATTCTGAGAGTAATTTTCACAAATACCCTAATTTGATAAGATTTTCATATTGATTTCGGGTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCTGATGCTGTTCCTACTC</pcr_primer_p1>
		<pcr_primer_p2>AAACACGCTAGTTTTCACAGAC</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>AAATCTGATGCTGTTCCTACTCGCAACCCTTCTCACTCTCCTTGTCAATCTGTTTTTCGCTTTTAGCTTCTCATTTCTGTTCGCTCTCCGCGGATTTTTCGTCGGAGCCACCTTGTATGGTGGAGCTCTCGTTTGGTTCGCTTTCTGGAGGAAACAACCAAGGAAATTGCTTATTTTGCTGTTGGTATTTTCCGCTGGAGGTCTGCTAGCAATGTCTGTGAAAACTAGCGTGTTT</canonical_amplicon>
		<polymorphic_amplicon>AAATCTGATGCTGTTCCTACTCGCAACCCTTCTCACTCTCCTTGTCAATCTGTTTYTCGCTTTTAGCTTCTCATTTCTGTTCGCTCTCCGCGGATTTTTCGTCGGAGCCACCTTGTATGGTGGAGCTCTCGTTTGGTTCGCTTTCTGGAGGAAACAACCAAGGAAATTGCTTATTTTGCTGTTGGTATTTTCCGCTGGAGGTCTGCTAGCAATGTCTGTGAAAACTAGCGTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14878</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>68178</contig_pos>
        <strand>+</strand>
        <context>GCTTATTTTG[C/T]TGTTGGTATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGTTTGGTTCGCTTTCTGGAGGAAACAACCAAGGAAATTGCTTATTTTG</left_flank>
        <right_flank>TGTTGGTATTTTCCGCTGGAGGTCTGCTAGCAATGTCTGTGAAAACTAGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTTTAAAATCCAAAAAATAATAAATTTTTGCTTCCAGAACAACCTGTTATCCTCCAACAAACGACAGAATGCTTCACTAATTCGAGGGAGAGCTGATAATCAAACAATTCGATTTCTGATTCTTTTGATCCTTTTTCTAATTGCTGGACTTGTAAGCACTGCGACCAGCCTATCTATATGTTCCGTTCGACACGAGGTGATAGGATGTCTTTGGACTTGTATTGGAATGTTTTGTGGCGCTTGGGCTAGTGAGTTTTTCGAAAAAATTTAAAATTTCAGCCAAATTCAAATTTCCAGCCAAGCTCACCGCTTCCCGGTCAAATCTGATGCTGTTCCTACTCGCAACCCTTCTCACTCTCCTTGTCAATCTGTTTTTCGCTTTTAGCTTCTCATTTCTGTTCGCTCTCCGCGGATTTTTCGTCGGAGCCACCTTGTATGGTGGAGCTCTCGTTTGGTTCGCTTTCTGGAGGAAACAACCAAGGAAATTGCTTATTTTGCTGTTGGTATTTTCCGCTGGAGGTCTGCTAGCAATGTCTGTGAAAACTAGCGTGTTTTCCGGTGAGATTTGGTTAAAATTCGAGAAAATCGAGAAAAAAAACCGAATTTTTTATTTTTAGTTTTTTTCACTGATTTTTTCCAGGAACATTTTGAAAAACCTTTAAAAAAGCTCAAAAAAAGCATTTAAAATCGCGAAACATTGAAATTTGGCATTGAAAACTACCCGTAACGTCATTTTTCGGCTTTTACATCCTTTTAGAACTACAGTAATCCGAAATTTTTGAAAATTTGGCCATAAATTTATTGTTTCCAGATTCTGAGAGTAATTTTCACAAATACCCTAATTTGATAAGATTTTCATATTGATTTCGGGTTACTGTAGCTTCTGGAAAAGTGCGCAAACACCGAATTGTCGAAAATCGAGATTTCGCGATTTTATACTAATGGACCATGGAAAAACTCGAATTTTGTGAATAAAGCTGTCACTGTATTTTTGGAAC</canonical>
            <polymorphic>TCCTTTAAAATCCAAAAAATAATAAATTTTTGCTTCCAGAACAACCTGTTATCCTCCAACAAACGACAGAATGCTTCACTAATTCGAGGGAGAGCTGATAATCAAACAATTCGATTTCTGATTCTTTTGATCCTTTTTCTAATTGCTGGACTTGTAAGCACTGCGACCAGCCTATCTATATGTTCCGTTCGACACGAGGTGATAGGATGTCTTTGGACTTGTATTGGAATGTTTTGTGGCGCTTGGGCTAGTGAGTTTTTCGAAAAAATTTAAAATTTCAGCCAAATTCAAATTTCCAGCCAAGCTCACCGCTTCCCGGTCAAATCTGATGCTGTTCCTACTCGCAACCCTTCTCACTCTCCTTGTCAATCTGTTTTTCGCTTTTAGCTTCTCATTTCTGTTCGCTCTCCGCGGATTTTTCGTCGGAGCCACCTTGTATGGTGGAGCTCTCGTTTGGTTCGCTTTCTGGAGGAAACAACCAAGGAAATTGCTTATTTTGYTGTTGGTATTTTCCGCTGGAGGTCTGCTAGCAATGTCTGTGAAAACTAGCGTGTTTTCCGGTGAGATTTGGTTAAAATTCGAGAAAATCGAGAAAAAAAACCGAATTTTTTATTTTTAGTTTTTTTCACTGATTTTTTCCAGGAACATTTTGAAAAACCTTTAAAAAAGCTCAAAAAAAGCATTTAAAATCGCGAAACATTGAAATTTGGCATTGAAAACTACCCGTAACGTCATTTTTCGGCTTTTACATCCTTTTAGAACTACAGTAATCCGAAATTTTTGAAAATTTGGCCATAAATTTATTGTTTCCAGATTCTGAGAGTAATTTTCACAAATACCCTAATTTGATAAGATTTTCATATTGATTTCGGGTTACTGTAGCTTCTGGAAAAGTGCGCAAACACCGAATTGTCGAAAATCGAGATTTCGCGATTTTATACTAATGGACCATGGAAAAACTCGAATTTTGTGAATAAAGCTGTCACTGTATTTTTGGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCTCACTCTCCTTGTCAATC</pcr_primer_p1>
		<pcr_primer_p2>CTCGATTTTCTCGAATTTTAAC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTTCTCACTCTCCTTGTCAATCTGTTTTTCGCTTTTAGCTTCTCATTTCTGTTCGCTCTCCGCGGATTTTTCGTCGGAGCCACCTTGTATGGTGGAGCTCTCGTTTGGTTCGCTTTCTGGAGGAAACAACCAAGGAAATTGCTTATTTTGCTGTTGGTATTTTCCGCTGGAGGTCTGCTAGCAATGTCTGTGAAAACTAGCGTGTTTTCCGGTGAGATTTGGTTAAAATTCGAGAAAATCGAG</canonical_amplicon>
		<polymorphic_amplicon>CTTCTCACTCTCCTTGTCAATCTGTTTTTCGCTTTTAGCTTCTCATTTCTGTTCGCTCTCCGCGGATTTTTCGTCGGAGCCACCTTGTATGGTGGAGCTCTCGTTTGGTTCGCTTTCTGGAGGAAACAACCAAGGAAATTGCTTATTTTGYTGTTGGTATTTTCCGCTGGAGGTCTGCTAGCAATGTCTGTGAAAACTAGCGTGTTTTCCGGTGAGATTTGGTTAAAATTCGAGAAAATCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14881</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>70010</contig_pos>
        <strand>+</strand>
        <context>TGAAAATTCC[C/T]TCATTTTCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATGCGGGAAAAGTTGCTTAAAAATTCTGAAAGTCTACTGAAAATTCC</left_flank>
        <right_flank>TCATTTTCGGTCTGAAAACTTCCTTTTTTTTTCCTATTTTTCTTTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGACCAAAACCGAGATGAACGCTGAAAAAGAGAAAGAAGTGGAGGAGAAAAAACTGCCGGTGGTTGATGGAAATACGAATTCCACGGATTCAGAAGCCACGACGACGTCTTCTAGTACTTCTACGACTACTACAACCTCTACAACGACGACGACGACCACAGAAGCTCCAACAACGACTTCTACAACTACAACGACCACGACGACGACTACAGAAGCGCCAACGACGACTACAAAAGTGATTACTGTAGATGTGAAAACGAGGGATAGCAAAGAAGAAGCGAGACGGAGGAAGCAAGAGGATCCGTGAGTTTTTTTGGTTCGCAAACAGGTAGAAGTTCTAAAAAAATTATGTTGAAAAATCAACAAAAATCGAAAATGTGCCGAATTTCTTGACCAAAAAATTCCCAATTCGAAAAAAAAATCTGAAAATTTTTGGAAATTTTAAGAAAATGCGGGAAAAGTTGCTTAAAAATTCTGAAAGTCTACTGAAAATTCCTTCATTTTCGGTCTGAAAACTTCCTTTTTTTTTCCTATTTTTCTTTTTTTTTGATCCAAAACTCCAAAAAATTGACTTTTTTCTTGCAAAAAGTTCTATTTGATCAGATGGATTTTCGAAAAAAAAAAATAAATTGAAAATCAATTTTGGAGGGAATTTTTACTTCAAAATGTGTAGAAAAATATGTAAATTCATATAAATCTGAGAAATTTTTGAAAAATTGAGAAATACCGGAAAATTGCTACAAAAGTGACAAAAAAGTCAGATTTTTCGCAATTTTTTCTTCGACTTTTTGCGAAATTTCTAGACCTTTTTAGGGTTTTCAGCTATTTTCGAAGATTCCTTTTCGATTTTCTCCGAATTTTCGGTCTGAAATTTGACAGGATAATGTTCCCGAAAATTACTGTAGAAAACTTATTTCGCGCTTGTAGTTTTTTCTGGAAATGGAAATGTTTTCTACAGTAATCTACAGTAACTTTCCCGAACACCAGCCTGTCAACA</canonical>
            <polymorphic>CAAGACCAAAACCGAGATGAACGCTGAAAAAGAGAAAGAAGTGGAGGAGAAAAAACTGCCGGTGGTTGATGGAAATACGAATTCCACGGATTCAGAAGCCACGACGACGTCTTCTAGTACTTCTACGACTACTACAACCTCTACAACGACGACGACGACCACAGAAGCTCCAACAACGACTTCTACAACTACAACGACCACGACGACGACTACAGAAGCGCCAACGACGACTACAAAAGTGATTACTGTAGATGTGAAAACGAGGGATAGCAAAGAAGAAGCGAGACGGAGGAAGCAAGAGGATCCGTGAGTTTTTTTGGTTCGCAAACAGGTAGAAGTTCTAAAAAAATTATGTTGAAAAATCAACAAAAATCGAAAATGTGCCGAATTTCTTGACCAAAAAATTCCCAATTCGAAAAAAAAATCTGAAAATTTTTGGAAATTTTAAGAAAATGCGGGAAAAGTTGCTTAAAAATTCTGAAAGTCTACTGAAAATTCCYTCATTTTCGGTCTGAAAACTTCCTTTTTTTTTCCTATTTTTCTTTTTTTTTGATCCAAAACTCCAAAAAATTGACTTTTTTCTTGCAAAAAGTTCTATTTGATCAGATGGATTTTCGAAAAAAAAAAATAAATTGAAAATCAATTTTGGAGGGAATTTTTACTTCAAAATGTGTAGAAAAATATGTAAATTCATATAAATCTGAGAAATTTTTGAAAAATTGAGAAATACCGGAAAATTGCTACAAAAGTGACAAAAAAGTCAGATTTTTCGCAATTTTTTCTTCGACTTTTTGCGAAATTTCTAGACCTTTTTAGGGTTTTCAGCTATTTTCGAAGATTCCTTTTCGATTTTCTCCGAATTTTCGGTCTGAAATTTGACAGGATAATGTTCCCGAAAATTACTGTAGAAAACTTATTTCGCGCTTGTAGTTTTTTCTGGAAATGGAAATGTTTTCTACAGTAATCTACAGTAACTTTCCCGAACACCAGCCTGTCAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTCCCAATTCGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCCCTCCAAAATTGAT</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>AAAATTCCCAATTCGAAAAAAAAATCTGAAAATTTTTGGAAATTTTAAGAAAATGCGGGAAAAGTTGCTTAAAAATTCTGAAAGTCTACTGAAAATTCCTTCATTTTCGGTCTGAAAACTTCCTTTTTTTTTCCTATTTTTCTTTTTTTTTGATCCAAAACTCCAAAAAATTGACTTTTTTCTTGCAAAAAGTTCTATTTGATCAGATGGATTTTCGAAAAAAAAAAATAAATTGAAAATCAATTTTGGAGGGAATTT</canonical_amplicon>
		<polymorphic_amplicon>AAAATTCCCAATTCGAAAAAAAAATCTGAAAATTTTTGGAAATTTTAAGAAAATGCGGGAAAAGTTGCTTAAAAATTCTGAAAGTCTACTGAAAATTCCYTCATTTTCGGTCTGAAAACTTCCTTTTTTTTTCCTATTTTTCTTTTTTTTTGATCCAAAACTCCAAAAAATTGACTTTTTTCTTGCAAAAAGTTCTATTTGATCAGATGGATTTTCGAAAAAAAAAAATAAATTGAAAATCAATTTTGGAGGGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14883</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>136313</contig_pos>
        <strand>+</strand>
        <context>CTCAGCGGTT[C/T]CTTTTGTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAAAAAGTTTTGGGTTGTTAAACAAATAGACAACTATTCCTCAGCGGTT</left_flank>
        <right_flank>CTTTTGTTTTATCCGGTTAACCTCTTCTATTGCTCATTTTCCATTAGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGGAAAGGAAGTCCGCAAAATAGAAAACAATAATTTTTTCGCGATTGGTCATTTATTGTCCTTTTATAGGGCCAGTCGGGATGATACGCAGGTTGCTCGCGAATGTTCAATTGTAGAGTCTCTCGTTCGCGGTAGATAAGGAATTGATAGTTTATAGCCATATCTCTGTAATTGGTCAATCACGAATCACCTGTGCATGCTAAGGGAGCGCTCTACCACTGAGCTATACCCCCGCACAAGTTGAAGAACACGGGAGGGCGTAGAGAACAGGGGAGATGTTGCGCCTCACACGTTGAAGAGATCGCAACAAGGAAGGTGGAAAAGACACAATGATGTAGGAATTTGGAATTTTTAATTGCAAGAATTTTTTAATTACAGGAAGCAATCCCAGTTCTTCCTCAGTTACAAAAGAGTTGGGCAAACAAAACTGATGCACACTTTTCTTGTAACAAAAAGTTTTGGGTTGTTAAACAAATAGACAACTATTCCTCAGCGGTTTCTTTTGTTTTATCCGGTTAACCTCTTCTATTGCTCATTTTCCATTAGAAAATTTTGAGAGCTCAAAATTCTAACTCAAAATGAAAGAACCCAAAACGTTGCTCAATTTGTCTACAGAAGTTTTACAAGAAGTGTTAAAACATATGGAAGCTAATAGAAGGTAACTACCGTAAAATTCGAGCTCAATTATCTCAGTAATAATGTAGAAGATATCAAAAATGTGTTTATTGATAAAATGTCAAGCATTTTATAGAAAATATGTTATCAGTTGATTACTTTTTGATATTTTTCACAGAAGCCGAGGTAAAGCAGCTCAACGTTTGAAGTTAGAAAAATCGGCTCTAGTATGAGATGCTGGTTCTTAGAAAAAATTCCGATTCTTAAAAAATTATGGATCCATTTTTTTCTAGGTCATGACCCATTTTTCCAGGTCATGAACCATTTTTTCTAGGTCATGACCCAATTTCTCTTGGTCATAACCCAATTTTTCTAGGTTATCTA</canonical>
            <polymorphic>AGGGAAAGGAAGTCCGCAAAATAGAAAACAATAATTTTTTCGCGATTGGTCATTTATTGTCCTTTTATAGGGCCAGTCGGGATGATACGCAGGTTGCTCGCGAATGTTCAATTGTAGAGTCTCTCGTTCGCGGTAGATAAGGAATTGATAGTTTATAGCCATATCTCTGTAATTGGTCAATCACGAATCACCTGTGCATGCTAAGGGAGCGCTCTACCACTGAGCTATACCCCCGCACAAGTTGAAGAACACGGGAGGGCGTAGAGAACAGGGGAGATGTTGCGCCTCACACGTTGAAGAGATCGCAACAAGGAAGGTGGAAAAGACACAATGATGTAGGAATTTGGAATTTTTAATTGCAAGAATTTTTTAATTACAGGAAGCAATCCCAGTTCTTCCTCAGTTACAAAAGAGTTGGGCAAACAAAACTGATGCACACTTTTCTTGTAACAAAAAGTTTTGGGTTGTTAAACAAATAGACAACTATTCCTCAGCGGTTYCTTTTGTTTTATCCGGTTAACCTCTTCTATTGCTCATTTTCCATTAGAAAATTTTGAGAGCTCAAAATTCTAACTCAAAATGAAAGAACCCAAAACGTTGCTCAATTTGTCTACAGAAGTTTTACAAGAAGTGTTAAAACATATGGAAGCTAATAGAAGGTAACTACCGTAAAATTCGAGCTCAATTATCTCAGTAATAATGTAGAAGATATCAAAAATGTGTTTATTGATAAAATGTCAAGCATTTTATAGAAAATATGTTATCAGTTGATTACTTTTTGATATTTTTCACAGAAGCCGAGGTAAAGCAGCTCAACGTTTGAAGTTAGAAAAATCGGCTCTAGTATGAGATGCTGGTTCTTAGAAAAAATTCCGATTCTTAAAAAATTATGGATCCATTTTTTTCTAGGTCATGACCCATTTTTCCAGGTCATGAACCATTTTTTCTAGGTCATGACCCAATTTCTCTTGGTCATAACCCAATTTTTCTAGGTTATCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGAAAAGACACAATGATGTAG</pcr_primer_p1>
		<pcr_primer_p2>TGAGCTCTCAAAATTTTCTAATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTGGAAAAGACACAATGATGTAGGAATTTGGAATTTTTAATTGCAAGAATTTTTTAATTACAGGAAGCAATCCCAGTTCTTCCTCAGTTACAAAAGAGTTGGGCAAACAAAACTGATGCACACTTTTCTTGTAACAAAAAGTTTTGGGTTGTTAAACAAATAGACAACTATTCCTCAGCGGTTTCTTTTGTTTTATCCGGTTAACCTCTTCTATTGCTCATTTTCCATTAGAAAATTTTGAGAGCTCA</canonical_amplicon>
		<polymorphic_amplicon>GTGGAAAAGACACAATGATGTAGGAATTTGGAATTTTTAATTGCAAGAATTTTTTAATTACAGGAAGCAATCCCAGTTCTTCCTCAGTTACAAAAGAGTTGGGCAAACAAAACTGATGCACACTTTTCTTGTAACAAAAAGTTTTGGGTTGTTAAACAAATAGACAACTATTCCTCAGCGGTTYCTTTTGTTTTATCCGGTTAACCTCTTCTATTGCTCATTTTCCATTAGAAAATTTTGAGAGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14884</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>136599</contig_pos>
        <strand></strand>
        <context>tttttgatat[T/C]tttcacagaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGTCAAGCATTTTATAGAAAATATGTTATCAGTTGATTACTTTTTGATAT</left_flank>
        <right_flank>TTTCACAGAAGCCGAGGTAAAGCAGCTCAACGTTTGAAGTTAGAAAAATC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACACGTTGAAGAGATCGCAACAAGGAAGGTGGAAAAGACACAATGATGTAGGAATTTGGAATTTTTAATTGCAAGAATTTTTTAATTACAGGAAGCAATCCCAGTTCTTCCTCAGTTACAAAAGAGTTGGGCAAACAAAACTGATGCACACTTTTCTTGTAACAAAAAGTTTTGGGTTGTTAAACAAATAGACAACTATTCCTCAGCGGTTTCTTTTGTTTTATCCGGTTAACCTCTTCTATTGCTCATTTTCCATTAGAAAATTTTGAGAGCTCAAAATTCTAACTCAAAATGAAAGAACCCAAAACGTTGCTCAATTTGTCTACAGAAGTTTTACAAGAAGTGTTAAAACATATGGAAGCTAATAGAAGGTAACTACCGTAAAATTCGAGCTCAATTATCTCAGTAATAATGTAGAAGATATCAAAAATGTGTTTATTGATAAAATGTCAAGCATTTTATAGAAAATATGTTATCAGTTGATTACTTTTTGATATTTTTCACAGAAGCCGAGGTAAAGCAGCTCAACGTTTGAAGTTAGAAAAATCGGCTCTAGTATGAGATGCTGGTTCTTAGAAAAAATTCCGATTCTTAAAAAATTATGGATCCATTTTTTTCTAGGTCATGACCCATTTTTCCAGGTCATGAACCATTTTTTCTAGGTCATGACCCAATTTCTCTTGGTCATAACCCAATTTTTCTAGGTTATCTATATTTACAGATTTTTGAAAATTTAAAAATCATAAATTTTCAGATTCGAGCTTGCCAAACGAATTCCTCTAATGAAGTCTCTTGAAAAGTCAGTACCTCTCAGAATCGACACTCTGGTTTTTGACGATTTGAGAATTCAAATCAACGACACTGAATACAAATTTGGAGTCTATAAGAAATATGACAAAAAAGAAGAAACTCCAGAATTCGTTGAATTTGAAAATAGCCAAGGTGGACTTCCGAATAATATTGATGAATTTGGATTTAATGATTTTTCAAATGAGGTC</canonical>
            <polymorphic>TCACACGTTGAAGAGATCGCAACAAGGAAGGTGGAAAAGACACAATGATGTAGGAATTTGGAATTTTTAATTGCAAGAATTTTTTAATTACAGGAAGCAATCCCAGTTCTTCCTCAGTTACAAAAGAGTTGGGCAAACAAAACTGATGCACACTTTTCTTGTAACAAAAAGTTTTGGGTTGTTAAACAAATAGACAACTATTCCTCAGCGGTTTCTTTTGTTTTATCCGGTTAACCTCTTCTATTGCTCATTTTCCATTAGAAAATTTTGAGAGCTCAAAATTCTAACTCAAAATGAAAGAACCCAAAACGTTGCTCAATTTGTCTACAGAAGTTTTACAAGAAGTGTTAAAACATATGGAAGCTAATAGAAGGTAACTACCGTAAAATTCGAGCTCAATTATCTCAGTAATAATGTAGAAGATATCAAAAATGTGTTTATTGATAAAATGTCAAGCATTTTATAGAAAATATGTTATCAGTTGATTACTTTTTGATATYTTTCACAGAAGCCGAGGTAAAGCAGCTCAACGTTTGAAGTTAGAAAAATCGGCTCTAGTATGAGATGCTGGTTCTTAGAAAAAATTCCGATTCTTAAAAAATTATGGATCCATTTTTTTCTAGGTCATGACCCATTTTTCCAGGTCATGAACCATTTTTTCTAGGTCATGACCCAATTTCTCTTGGTCATAACCCAATTTTTCTAGGTTATCTATATTTACAGATTTTTGAAAATTTAAAAATCATAAATTTTCAGATTCGAGCTTGCCAAACGAATTCCTCTAATGAAGTCTCTTGAAAAGTCAGTACCTCTCAGAATCGACACTCTGGTTTTTGACGATTTGAGAATTCAAATCAACGACACTGAATACAAATTTGGAGTCTATAAGAAATATGACAAAAAAGAAGAAACTCCAGAATTCGTTGAATTTGAAAATAGCCAAGGTGGACTTCCGAATAATATTGATGAATTTGGATTTAATGATTTTTCAAATGAGGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTACAGAAGTTTTACAAGAAGTGTT</pcr_primer_p1>
		<pcr_primer_p2>AGCTCGAATCTGAAAATTTATG</pcr_primer_p2>
		<pcr_amplicon_size>442</pcr_amplicon_size>
		<canonical_amplicon>TCTACAGAAGTTTTACAAGAAGTGTTAAAACATATGGAAGCTAATAGAAGGTAACTACCGTAAAATTCGAGCTCAATTATCTCAGTAATAATGTAGAAGATATCAAAAATGTGTTTATTGATAAAATGTCAAGCATTTTATAGAAAATATGTTATCAGTTGATTACTTTTTGATATTTTTCACAGAAGCCGAGGTAAAGCAGCTCAACGTTTGAAGTTAGAAAAATCGGCTCTAGTATGAGATGCTGGTTCTTAGAAAAAATTCCGATTCTTAAAAAATTATGGATCCATTTTTTTCTAGGTCATGACCCATTTTTCCAGGTCATGAACCATTTTTTCTAGGTCATGACCCAATTTCTCTTGGTCATAACCCAATTTTTCTAGGTTATCTATATTTACAGATTTTTGAAAATTTAAAAATCATAAATTTTCAGATTCGAGCT</canonical_amplicon>
		<polymorphic_amplicon>TCTACAGAAGTTTTACAAGAAGTGTTAAAACATATGGAAGCTAATAGAAGGTAACTACCGTAAAATTCGAGCTCAATTATCTCAGTAATAATGTAGAAGATATCAAAAATGTGTTTATTGATAAAATGTCAAGCATTTTATAGAAAATATGTTATCAGTTGATTACTTTTTGATATYTTTCACAGAAGCCGAGGTAAAGCAGCTCAACGTTTGAAGTTAGAAAAATCGGCTCTAGTATGAGATGCTGGTTCTTAGAAAAAATTCCGATTCTTAAAAAATTATGGATCCATTTTTTTCTAGGTCATGACCCATTTTTCCAGGTCATGAACCATTTTTTCTAGGTCATGACCCAATTTCTCTTGGTCATAACCCAATTTTTCTAGGTTATCTATATTTACAGATTTTTGAAAATTTAAAAATCATAAATTTTCAGATTCGAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14885</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>138345</contig_pos>
        <strand>+</strand>
        <context>CACAAAATAG[C/T]CTTTTGCAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGTCGGAATTTGACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAG</left_flank>
        <right_flank>CTTTTGCAATCATGCAGTAGGTCAAACTTGAGTCCATATCTCATTTCCTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACGTATGAGAATCTGAAGGATGTAGTAGAAGAGAGCAGTTATCCATTGGAATATGTGGAATTCAATGGAGCTGAATTAGAAGGCGCGAATTTGAGAAATCAAGTGATAAGAGAGGCAAAAGAAGTTGTGATTTCTGGGAAATTGGAAAATGGAAAATGGACGCCTTACCTAGAGAAAATGGGAAATCCCAAGGTCCATGTAAAGGATGGATTTGAAAAGGAACCAATTGACGATTTGTATTTCATCATTTGTTCATGGATGAATAATGGAAACTTCGAGAAGAGAATGTGGACAGTTAAGTTGAATGATGAGCAATCTGGAGCGGAGATTTTGAAAAAGTTGGCAAACGATTTTTATGATGAGGATGTGAAAGAGAATCGGTGAGAAATATTTCATACCGAACATTTTTTTCCTGTTTTAAAATTTTTGGAAATGCTGAAGTTTCTTATTGTCGGAATTTGACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGTAGGTCAAACTTGAGTCCATATCTCATTTCCTGTCTAGGATATTTATAAGTGGTCCACTTATAAAATGTTTACCATGATATCAAAAATATTTTGTCAGTTGACCAATTTTTGATATCTTTCACAGGCGCCGAGATAAACTGGCATAAAGATTTGAGCAATTTGTTTGAAAAATCGCTTCTGAAAACTATCTCTTTCGAATCTTCATATTTTTAATGGGGTTATGCACGTAATAAATTTGCAATAAAAATGGCAAATAAACACACAAAAATACTATGCAGATACGCACATGGGTTCAAACCAATGGGTCAGAAATCGCGCCCCAGTAAACGTGAGATTTTAGAAAAAATTCGCTGCTAAATTATGTGGCTGAGGATCAAACTTTTAAACGTTGCACGAAAAAAGTCACGCGTTGCAACTCGTTGATTAGAACTAATTAGGTCGAATCCACGTCAGCTTGGAAATTATTAAATTTCTTCTGGCCT</canonical>
            <polymorphic>TACGTATGAGAATCTGAAGGATGTAGTAGAAGAGAGCAGTTATCCATTGGAATATGTGGAATTCAATGGAGCTGAATTAGAAGGCGCGAATTTGAGAAATCAAGTGATAAGAGAGGCAAAAGAAGTTGTGATTTCTGGGAAATTGGAAAATGGAAAATGGACGCCTTACCTAGAGAAAATGGGAAATCCCAAGGTCCATGTAAAGGATGGATTTGAAAAGGAACCAATTGACGATTTGTATTTCATCATTTGTTCATGGATGAATAATGGAAACTTCGAGAAGAGAATGTGGACAGTTAAGTTGAATGATGAGCAATCTGGAGCGGAGATTTTGAAAAAGTTGGCAAACGATTTTTATGATGAGGATGTGAAAGAGAATCGGTGAGAAATATTTCATACCGAACATTTTTTTCCTGTTTTAAAATTTTTGGAAATGCTGAAGTTTCTTATTGTCGGAATTTGACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGYCTTTTGCAATCATGCAGTAGGTCAAACTTGAGTCCATATCTCATTTCCTGTCTAGGATATTTATAAGTGGTCCACTTATAAAATGTTTACCATGATATCAAAAATATTTTGTCAGTTGACCAATTTTTGATATCTTTCACAGGCGCCGAGATAAACTGGCATAAAGATTTGAGCAATTTGTTTGAAAAATCGCTTCTGAAAACTATCTCTTTCGAATCTTCATATTTTTAATGGGGTTATGCACGTAATAAATTTGCAATAAAAATGGCAAATAAACACACAAAAATACTATGCAGATACGCACATGGGTTCAAACCAATGGGTCAGAAATCGCGCCCCAGTAAACGTGAGATTTTAGAAAAAATTCGCTGCTAAATTATGTGGCTGAGGATCAAACTTTTAAACGTTGCACGAAAAAAGTCACGCGTTGCAACTCGTTGATTAGAACTAATTAGGTCGAATCCACGTCAGCTTGGAAATTATTAAATTTCTTCTGGCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>411 385 87 71 26 17 3</canonical_bands>
                <polymorphic_bands>411 402 87 71 26 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATTGTCGGAATTTGACTACAG</pcr_primer_p1>
		<pcr_primer_p2>TCAGAAGCGATTTTTCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTATTGTCGGAATTTGACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGTAGGTCAAACTTGAGTCCATATCTCATTTCCTGTCTAGGATATTTATAAGTGGTCCACTTATAAAATGTTTACCATGATATCAAAAATATTTTGTCAGTTGACCAATTTTTGATATCTTTCACAGGCGCCGAGATAAACTGGCATAAAGATTTGAGCAATTTGTTTGAAAAATCGCTTCTGA</canonical_amplicon>
		<polymorphic_amplicon>TTATTGTCGGAATTTGACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGYCTTTTGCAATCATGCAGTAGGTCAAACTTGAGTCCATATCTCATTTCCTGTCTAGGATATTTATAAGTGGTCCACTTATAAAATGTTTACCATGATATCAAAAATATTTTGTCAGTTGACCAATTTTTGATATCTTTCACAGGCGCCGAGATAAACTGGCATAAAGATTTGAGCAATTTGTTTGAAAAATCGCTTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14886</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>138089</contig_pos>
        <strand>+</strand>
        <context>ATTTGTATTT[C/T]ATCATTTGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCCATGTAAAGGATGGATTTGAAAAGGAACCAATTGACGATTTGTATTT</left_flank>
        <right_flank>ATCATTTGTTCATGGATGAATAATGGAAACTTCGAGAAGAGAATGTGGAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCGAGATTCTGGAGTCACTTCCTATATACCGTATACCCAACTGCTCATCACATCGACACGTGGCACCCATATCGAACGTTTTGAGTACAGTGGAAACATCCACGAGGCATTTAGGTGTCTGATTGCTCAGCTTTTTGGAAACCGTGGGCATCCGATAGAAGTTAAAAGATTTGAACCGAATTCAATGATCCTGAGGCTTCCCCTTGGAGTCAAATTTCAAATTGAAGGATTGAAATTCAGCTATGCAGTTCAAAATACGTATGAGAATCTGAAGGATGTAGTAGAAGAGAGCAGTTATCCATTGGAATATGTGGAATTCAATGGAGCTGAATTAGAAGGCGCGAATTTGAGAAATCAAGTGATAAGAGAGGCAAAAGAAGTTGTGATTTCTGGGAAATTGGAAAATGGAAAATGGACGCCTTACCTAGAGAAAATGGGAAATCCCAAGGTCCATGTAAAGGATGGATTTGAAAAGGAACCAATTGACGATTTGTATTTCATCATTTGTTCATGGATGAATAATGGAAACTTCGAGAAGAGAATGTGGACAGTTAAGTTGAATGATGAGCAATCTGGAGCGGAGATTTTGAAAAAGTTGGCAAACGATTTTTATGATGAGGATGTGAAAGAGAATCGGTGAGAAATATTTCATACCGAACATTTTTTTCCTGTTTTAAAATTTTTGGAAATGCTGAAGTTTCTTATTGTCGGAATTTGACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGTAGGTCAAACTTGAGTCCATATCTCATTTCCTGTCTAGGATATTTATAAGTGGTCCACTTATAAAATGTTTACCATGATATCAAAAATATTTTGTCAGTTGACCAATTTTTGATATCTTTCACAGGCGCCGAGATAAACTGGCATAAAGATTTGAGCAATTTGTTTGAAAAATCGCTTCTGAAAACTATCTCTTTCGAATCTTCATATTTTTAATGGGGTTATGCAC</canonical>
            <polymorphic>ACCGAGATTCTGGAGTCACTTCCTATATACCGTATACCCAACTGCTCATCACATCGACACGTGGCACCCATATCGAACGTTTTGAGTACAGTGGAAACATCCACGAGGCATTTAGGTGTCTGATTGCTCAGCTTTTTGGAAACCGTGGGCATCCGATAGAAGTTAAAAGATTTGAACCGAATTCAATGATCCTGAGGCTTCCCCTTGGAGTCAAATTTCAAATTGAAGGATTGAAATTCAGCTATGCAGTTCAAAATACGTATGAGAATCTGAAGGATGTAGTAGAAGAGAGCAGTTATCCATTGGAATATGTGGAATTCAATGGAGCTGAATTAGAAGGCGCGAATTTGAGAAATCAAGTGATAAGAGAGGCAAAAGAAGTTGTGATTTCTGGGAAATTGGAAAATGGAAAATGGACGCCTTACCTAGAGAAAATGGGAAATCCCAAGGTCCATGTAAAGGATGGATTTGAAAAGGAACCAATTGACGATTTGTATTTYATCATTTGTTCATGGATGAATAATGGAAACTTCGAGAAGAGAATGTGGACAGTTAAGTTGAATGATGAGCAATCTGGAGCGGAGATTTTGAAAAAGTTGGCAAACGATTTTTATGATGAGGATGTGAAAGAGAATCGGTGAGAAATATTTCATACCGAACATTTTTTTCCTGTTTTAAAATTTTTGGAAATGCTGAAGTTTCTTATTGTCGGAATTTGACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGTAGGTCAAACTTGAGTCCATATCTCATTTCCTGTCTAGGATATTTATAAGTGGTCCACTTATAAAATGTTTACCATGATATCAAAAATATTTTGTCAGTTGACCAATTTTTGATATCTTTCACAGGCGCCGAGATAAACTGGCATAAAGATTTGAGCAATTTGTTTGAAAAATCGCTTCTGAAAACTATCTCTTTCGAATCTTCATATTTTTAATGGGGTTATGCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAATGGAGCTGAATTAGAAG</pcr_primer_p1>
		<pcr_primer_p2>CATCATTCAACTTAACTGTCCAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCAATGGAGCTGAATTAGAAGGCGCGAATTTGAGAAATCAAGTGATAAGAGAGGCAAAAGAAGTTGTGATTTCTGGGAAATTGGAAAATGGAAAATGGACGCCTTACCTAGAGAAAATGGGAAATCCCAAGGTCCATGTAAAGGATGGATTTGAAAAGGAACCAATTGACGATTTGTATTTCATCATTTGTTCATGGATGAATAATGGAAACTTCGAGAAGAGAATGTGGACAGTTAAGTTGAATGATG</canonical_amplicon>
		<polymorphic_amplicon>TCAATGGAGCTGAATTAGAAGGCGCGAATTTGAGAAATCAAGTGATAAGAGAGGCAAAAGAAGTTGTGATTTCTGGGAAATTGGAAAATGGAAAATGGACGCCTTACCTAGAGAAAATGGGAAATCCCAAGGTCCATGTAAAGGATGGATTTGAAAAGGAACCAATTGACGATTTGTATTTYATCATTTGTTCATGGATGAATAATGGAAACTTCGAGAAGAGAATGTGGACAGTTAAGTTGAATGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14887</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>138051</contig_pos>
        <strand>+</strand>
        <context>CCATGTAAAG[A/G]ATGGATTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGGACGCCTTACCTAGAGAAAATGGGAAATCCCAAGGTCCATGTAAAG</left_flank>
        <right_flank>ATGGATTTGAAAAGGAACCAATTGACGATTTGTATTTCATCATTTGTTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTCACAAATCCATCGCAGATCTCCTCGCATTCCAATACCGAGATTCTGGAGTCACTTCCTATATACCGTATACCCAACTGCTCATCACATCGACACGTGGCACCCATATCGAACGTTTTGAGTACAGTGGAAACATCCACGAGGCATTTAGGTGTCTGATTGCTCAGCTTTTTGGAAACCGTGGGCATCCGATAGAAGTTAAAAGATTTGAACCGAATTCAATGATCCTGAGGCTTCCCCTTGGAGTCAAATTTCAAATTGAAGGATTGAAATTCAGCTATGCAGTTCAAAATACGTATGAGAATCTGAAGGATGTAGTAGAAGAGAGCAGTTATCCATTGGAATATGTGGAATTCAATGGAGCTGAATTAGAAGGCGCGAATTTGAGAAATCAAGTGATAAGAGAGGCAAAAGAAGTTGTGATTTCTGGGAAATTGGAAAATGGAAAATGGACGCCTTACCTAGAGAAAATGGGAAATCCCAAGGTCCATGTAAAGGATGGATTTGAAAAGGAACCAATTGACGATTTGTATTTCATCATTTGTTCATGGATGAATAATGGAAACTTCGAGAAGAGAATGTGGACAGTTAAGTTGAATGATGAGCAATCTGGAGCGGAGATTTTGAAAAAGTTGGCAAACGATTTTTATGATGAGGATGTGAAAGAGAATCGGTGAGAAATATTTCATACCGAACATTTTTTTCCTGTTTTAAAATTTTTGGAAATGCTGAAGTTTCTTATTGTCGGAATTTGACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGTAGGTCAAACTTGAGTCCATATCTCATTTCCTGTCTAGGATATTTATAAGTGGTCCACTTATAAAATGTTTACCATGATATCAAAAATATTTTGTCAGTTGACCAATTTTTGATATCTTTCACAGGCGCCGAGATAAACTGGCATAAAGATTTGAGCAATTTGTTTGAAAAATCGCTTCTGAAAACTAT</canonical>
            <polymorphic>ACTTCACAAATCCATCGCAGATCTCCTCGCATTCCAATACCGAGATTCTGGAGTCACTTCCTATATACCGTATACCCAACTGCTCATCACATCGACACGTGGCACCCATATCGAACGTTTTGAGTACAGTGGAAACATCCACGAGGCATTTAGGTGTCTGATTGCTCAGCTTTTTGGAAACCGTGGGCATCCGATAGAAGTTAAAAGATTTGAACCGAATTCAATGATCCTGAGGCTTCCCCTTGGAGTCAAATTTCAAATTGAAGGATTGAAATTCAGCTATGCAGTTCAAAATACGTATGAGAATCTGAAGGATGTAGTAGAAGAGAGCAGTTATCCATTGGAATATGTGGAATTCAATGGAGCTGAATTAGAAGGCGCGAATTTGAGAAATCAAGTGATAAGAGAGGCAAAAGAAGTTGTGATTTCTGGGAAATTGGAAAATGGAAAATGGACGCCTTACCTAGAGAAAATGGGAAATCCCAAGGTCCATGTAAAGRATGGATTTGAAAAGGAACCAATTGACGATTTGTATTTCATCATTTGTTCATGGATGAATAATGGAAACTTCGAGAAGAGAATGTGGACAGTTAAGTTGAATGATGAGCAATCTGGAGCGGAGATTTTGAAAAAGTTGGCAAACGATTTTTATGATGAGGATGTGAAAGAGAATCGGTGAGAAATATTTCATACCGAACATTTTTTTCCTGTTTTAAAATTTTTGGAAATGCTGAAGTTTCTTATTGTCGGAATTTGACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGTAGGTCAAACTTGAGTCCATATCTCATTTCCTGTCTAGGATATTTATAAGTGGTCCACTTATAAAATGTTTACCATGATATCAAAAATATTTTGTCAGTTGACCAATTTTTGATATCTTTCACAGGCGCCGAGATAAACTGGCATAAAGATTTGAGCAATTTGTTTGAAAAATCGCTTCTGAAAACTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAATGGAGCTGAATTAGAAG</pcr_primer_p1>
		<pcr_primer_p2>CATCATTCAACTTAACTGTCCAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCAATGGAGCTGAATTAGAAGGCGCGAATTTGAGAAATCAAGTGATAAGAGAGGCAAAAGAAGTTGTGATTTCTGGGAAATTGGAAAATGGAAAATGGACGCCTTACCTAGAGAAAATGGGAAATCCCAAGGTCCATGTAAAGGATGGATTTGAAAAGGAACCAATTGACGATTTGTATTTCATCATTTGTTCATGGATGAATAATGGAAACTTCGAGAAGAGAATGTGGACAGTTAAGTTGAATGATG</canonical_amplicon>
		<polymorphic_amplicon>TCAATGGAGCTGAATTAGAAGGCGCGAATTTGAGAAATCAAGTGATAAGAGAGGCAAAAGAAGTTGTGATTTCTGGGAAATTGGAAAATGGAAAATGGACGCCTTACCTAGAGAAAATGGGAAATCCCAAGGTCCATGTAAAGRATGGATTTGAAAAGGAACCAATTGACGATTTGTATTTCATCATTTGTTCATGGATGAATAATGGAAACTTCGAGAAGAGAATGTGGACAGTTAAGTTGAATGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14888</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>138028</contig_pos>
        <strand>+</strand>
        <context>GAGAAAATGG[A/G]AAATCCCAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTGGGAAATTGGAAAATGGAAAATGGACGCCTTACCTAGAGAAAATGG</left_flank>
        <right_flank>AAATCCCAAGGTCCATGTAAAGGATGGATTTGAAAAGGAACCAATTGACG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATTCAAAACCTTCAACAGAAACTTCACAAATCCATCGCAGATCTCCTCGCATTCCAATACCGAGATTCTGGAGTCACTTCCTATATACCGTATACCCAACTGCTCATCACATCGACACGTGGCACCCATATCGAACGTTTTGAGTACAGTGGAAACATCCACGAGGCATTTAGGTGTCTGATTGCTCAGCTTTTTGGAAACCGTGGGCATCCGATAGAAGTTAAAAGATTTGAACCGAATTCAATGATCCTGAGGCTTCCCCTTGGAGTCAAATTTCAAATTGAAGGATTGAAATTCAGCTATGCAGTTCAAAATACGTATGAGAATCTGAAGGATGTAGTAGAAGAGAGCAGTTATCCATTGGAATATGTGGAATTCAATGGAGCTGAATTAGAAGGCGCGAATTTGAGAAATCAAGTGATAAGAGAGGCAAAAGAAGTTGTGATTTCTGGGAAATTGGAAAATGGAAAATGGACGCCTTACCTAGAGAAAATGGGAAATCCCAAGGTCCATGTAAAGGATGGATTTGAAAAGGAACCAATTGACGATTTGTATTTCATCATTTGTTCATGGATGAATAATGGAAACTTCGAGAAGAGAATGTGGACAGTTAAGTTGAATGATGAGCAATCTGGAGCGGAGATTTTGAAAAAGTTGGCAAACGATTTTTATGATGAGGATGTGAAAGAGAATCGGTGAGAAATATTTCATACCGAACATTTTTTTCCTGTTTTAAAATTTTTGGAAATGCTGAAGTTTCTTATTGTCGGAATTTGACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGTAGGTCAAACTTGAGTCCATATCTCATTTCCTGTCTAGGATATTTATAAGTGGTCCACTTATAAAATGTTTACCATGATATCAAAAATATTTTGTCAGTTGACCAATTTTTGATATCTTTCACAGGCGCCGAGATAAACTGGCATAAAGATTTGAGCAATTTGTTT</canonical>
            <polymorphic>GAAATTCAAAACCTTCAACAGAAACTTCACAAATCCATCGCAGATCTCCTCGCATTCCAATACCGAGATTCTGGAGTCACTTCCTATATACCGTATACCCAACTGCTCATCACATCGACACGTGGCACCCATATCGAACGTTTTGAGTACAGTGGAAACATCCACGAGGCATTTAGGTGTCTGATTGCTCAGCTTTTTGGAAACCGTGGGCATCCGATAGAAGTTAAAAGATTTGAACCGAATTCAATGATCCTGAGGCTTCCCCTTGGAGTCAAATTTCAAATTGAAGGATTGAAATTCAGCTATGCAGTTCAAAATACGTATGAGAATCTGAAGGATGTAGTAGAAGAGAGCAGTTATCCATTGGAATATGTGGAATTCAATGGAGCTGAATTAGAAGGCGCGAATTTGAGAAATCAAGTGATAAGAGAGGCAAAAGAAGTTGTGATTTCTGGGAAATTGGAAAATGGAAAATGGACGCCTTACCTAGAGAAAATGGRAAATCCCAAGGTCCATGTAAAGGATGGATTTGAAAAGGAACCAATTGACGATTTGTATTTCATCATTTGTTCATGGATGAATAATGGAAACTTCGAGAAGAGAATGTGGACAGTTAAGTTGAATGATGAGCAATCTGGAGCGGAGATTTTGAAAAAGTTGGCAAACGATTTTTATGATGAGGATGTGAAAGAGAATCGGTGAGAAATATTTCATACCGAACATTTTTTTCCTGTTTTAAAATTTTTGGAAATGCTGAAGTTTCTTATTGTCGGAATTTGACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGTAGGTCAAACTTGAGTCCATATCTCATTTCCTGTCTAGGATATTTATAAGTGGTCCACTTATAAAATGTTTACCATGATATCAAAAATATTTTGTCAGTTGACCAATTTTTGATATCTTTCACAGGCGCCGAGATAAACTGGCATAAAGATTTGAGCAATTTGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAATGGAGCTGAATTAGAAG</pcr_primer_p1>
		<pcr_primer_p2>CATCATTCAACTTAACTGTCCAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCAATGGAGCTGAATTAGAAGGCGCGAATTTGAGAAATCAAGTGATAAGAGAGGCAAAAGAAGTTGTGATTTCTGGGAAATTGGAAAATGGAAAATGGACGCCTTACCTAGAGAAAATGGGAAATCCCAAGGTCCATGTAAAGGATGGATTTGAAAAGGAACCAATTGACGATTTGTATTTCATCATTTGTTCATGGATGAATAATGGAAACTTCGAGAAGAGAATGTGGACAGTTAAGTTGAATGATG</canonical_amplicon>
		<polymorphic_amplicon>TCAATGGAGCTGAATTAGAAGGCGCGAATTTGAGAAATCAAGTGATAAGAGAGGCAAAAGAAGTTGTGATTTCTGGGAAATTGGAAAATGGAAAATGGACGCCTTACCTAGAGAAAATGGRAAATCCCAAGGTCCATGTAAAGGATGGATTTGAAAAGGAACCAATTGACGATTTGTATTTCATCATTTGTTCATGGATGAATAATGGAAACTTCGAGAAGAGAATGTGGACAGTTAAGTTGAATGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14889</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>137847</contig_pos>
        <strand>+</strand>
        <context>AGTTCAAAAT[A/G]CGTATGAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGTCAAATTTCAAATTGAAGGATTGAAATTCAGCTATGCAGTTCAAAAT</left_flank>
        <right_flank>CGTATGAGAATCTGAAGGATGTAGTAGAAGAGAGCAGTTATCCATTGGAA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATAATATTTTTCAGAAAATGAATAGAAATTGAAGAACTTCGATATGTTTGAAGATGTAACTTGAGATTATCAAAAAGTTAAAGACTTTCGAGAAAAAGTTTTGTCAATTTTTCAAAAACTTTCAGGAACAAGAAAAACAAATCGCCCTTCTCCGATCTTCCGAACCCCAAAACCATTTTGAAATTCAAAACCTTCAACAGAAACTTCACAAATCCATCGCAGATCTCCTCGCATTCCAATACCGAGATTCTGGAGTCACTTCCTATATACCGTATACCCAACTGCTCATCACATCGACACGTGGCACCCATATCGAACGTTTTGAGTACAGTGGAAACATCCACGAGGCATTTAGGTGTCTGATTGCTCAGCTTTTTGGAAACCGTGGGCATCCGATAGAAGTTAAAAGATTTGAACCGAATTCAATGATCCTGAGGCTTCCCCTTGGAGTCAAATTTCAAATTGAAGGATTGAAATTCAGCTATGCAGTTCAAAATACGTATGAGAATCTGAAGGATGTAGTAGAAGAGAGCAGTTATCCATTGGAATATGTGGAATTCAATGGAGCTGAATTAGAAGGCGCGAATTTGAGAAATCAAGTGATAAGAGAGGCAAAAGAAGTTGTGATTTCTGGGAAATTGGAAAATGGAAAATGGACGCCTTACCTAGAGAAAATGGGAAATCCCAAGGTCCATGTAAAGGATGGATTTGAAAAGGAACCAATTGACGATTTGTATTTCATCATTTGTTCATGGATGAATAATGGAAACTTCGAGAAGAGAATGTGGACAGTTAAGTTGAATGATGAGCAATCTGGAGCGGAGATTTTGAAAAAGTTGGCAAACGATTTTTATGATGAGGATGTGAAAGAGAATCGGTGAGAAATATTTCATACCGAACATTTTTTTCCTGTTTTAAAATTTTTGGAAATGCTGAAGTTTCTTATTGTCGGAATTTGACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGCCT</canonical>
            <polymorphic>AAATAATATTTTTCAGAAAATGAATAGAAATTGAAGAACTTCGATATGTTTGAAGATGTAACTTGAGATTATCAAAAAGTTAAAGACTTTCGAGAAAAAGTTTTGTCAATTTTTCAAAAACTTTCAGGAACAAGAAAAACAAATCGCCCTTCTCCGATCTTCCGAACCCCAAAACCATTTTGAAATTCAAAACCTTCAACAGAAACTTCACAAATCCATCGCAGATCTCCTCGCATTCCAATACCGAGATTCTGGAGTCACTTCCTATATACCGTATACCCAACTGCTCATCACATCGACACGTGGCACCCATATCGAACGTTTTGAGTACAGTGGAAACATCCACGAGGCATTTAGGTGTCTGATTGCTCAGCTTTTTGGAAACCGTGGGCATCCGATAGAAGTTAAAAGATTTGAACCGAATTCAATGATCCTGAGGCTTCCCCTTGGAGTCAAATTTCAAATTGAAGGATTGAAATTCAGCTATGCAGTTCAAAATRCGTATGAGAATCTGAAGGATGTAGTAGAAGAGAGCAGTTATCCATTGGAATATGTGGAATTCAATGGAGCTGAATTAGAAGGCGCGAATTTGAGAAATCAAGTGATAAGAGAGGCAAAAGAAGTTGTGATTTCTGGGAAATTGGAAAATGGAAAATGGACGCCTTACCTAGAGAAAATGGGAAATCCCAAGGTCCATGTAAAGGATGGATTTGAAAAGGAACCAATTGACGATTTGTATTTCATCATTTGTTCATGGATGAATAATGGAAACTTCGAGAAGAGAATGTGGACAGTTAAGTTGAATGATGAGCAATCTGGAGCGGAGATTTTGAAAAAGTTGGCAAACGATTTTTATGATGAGGATGTGAAAGAGAATCGGTGAGAAATATTTCATACCGAACATTTTTTTCCTGTTTTAAAATTTTTGGAAATGCTGAAGTTTCTTATTGTCGGAATTTGACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>499 302 199</canonical_bands>
                <polymorphic_bands>698 302</polymorphic_bands>
            </assay>
            <assay>
                <site>TACGTA</site>
                <isoschizomers>
                    <enzyme>BstSNI</enzyme>
                    <enzyme>Eco105I</enzyme>
                    <enzyme>SnaBI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>500 301 181 18</canonical_bands>
                <polymorphic_bands>681 301 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTGAGTACAGTGGAAACATC</pcr_primer_p1>
		<pcr_primer_p2>CTCCATTGAATTCCACATATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTTTGAGTACAGTGGAAACATCCACGAGGCATTTAGGTGTCTGATTGCTCAGCTTTTTGGAAACCGTGGGCATCCGATAGAAGTTAAAAGATTTGAACCGAATTCAATGATCCTGAGGCTTCCCCTTGGAGTCAAATTTCAAATTGAAGGATTGAAATTCAGCTATGCAGTTCAAAATACGTATGAGAATCTGAAGGATGTAGTAGAAGAGAGCAGTTATCCATTGGAATATGTGGAATTCAATGGAG</canonical_amplicon>
		<polymorphic_amplicon>GTTTTGAGTACAGTGGAAACATCCACGAGGCATTTAGGTGTCTGATTGCTCAGCTTTTTGGAAACCGTGGGCATCCGATAGAAGTTAAAAGATTTGAACCGAATTCAATGATCCTGAGGCTTCCCCTTGGAGTCAAATTTCAAATTGAAGGATTGAAATTCAGCTATGCAGTTCAAAATRCGTATGAGAATCTGAAGGATGTAGTAGAAGAGAGCAGTTATCCATTGGAATATGTGGAATTCAATGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14890</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>149695</contig_pos>
        <strand>+</strand>
        <context>AATTATCTTT[A/T]GAAACAGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGGTAGTAAAGATAATGTATTTCTCCCTTCTCTTTCTACTAATTATCTTT</left_flank>
        <right_flank>GAAACAGAGAAAAAGAGACACCAGACAGCACTAAACTTTCGTTGCTTTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGTCTCCGGTTTTCAGAAACTGTTCGACTTCCGAGTTTGAGGAAGATGACGTCGGGGATGACGTCATTTCTGGAATACAGTTATTTTTTTCAAAAATTTGGAAGTTATAAAATCAAATCAAACTCATTAAAATCTTTAAAAATTAGTAAATGAAGTAGTTAAAATGAAAATTTTGGGAAGTCTATATTCATGAAGAAATATGAAGTTTGAGTTTGGTAAAATAAGTCATAAGGAAAAAAAGTACAGAAATTTGAAAATTACTGTTTCAAATTGAATATTTTCATGAATAAAACTTCAAACTTGATTGATAGAGATTAAAGTTTTCTAAAAACAAAGTTTAAGCTTTTTGAATTTCCCGTTTGTTCAGTTTTGCCTAGTTTTGGAGAAAAACACCAACTTCAAACATTTGGGTTTTCACTGAAAAATGAACAATGAAACAGTAAAAAAGGGTAGTAAAGATAATGTATTTCTCCCTTCTCTTTCTACTAATTATCTTTAGAAACAGAGAAAAAGAGACACCAGACAGCACTAAACTTTCGTTGCTTTGATTTATGACATTGAAAAATTGTTATAGAAAAAAGAAGAATAAGGTGAGATAGGGTTAGAAGAAGAAGAAGAAGAACGAATATGATGACGTTGACGGCAAAGATCATGGAAACTGAGAGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTAT</canonical>
            <polymorphic>AACGTCTCCGGTTTTCAGAAACTGTTCGACTTCCGAGTTTGAGGAAGATGACGTCGGGGATGACGTCATTTCTGGAATACAGTTATTTTTTTCAAAAATTTGGAAGTTATAAAATCAAATCAAACTCATTAAAATCTTTAAAAATTAGTAAATGAAGTAGTTAAAATGAAAATTTTGGGAAGTCTATATTCATGAAGAAATATGAAGTTTGAGTTTGGTAAAATAAGTCATAAGGAAAAAAAGTACAGAAATTTGAAAATTACTGTTTCAAATTGAATATTTTCATGAATAAAACTTCAAACTTGATTGATAGAGATTAAAGTTTTCTAAAAACAAAGTTTAAGCTTTTTGAATTTCCCGTTTGTTCAGTTTTGCCTAGTTTTGGAGAAAAACACCAACTTCAAACATTTGGGTTTTCACTGAAAAATGAACAATGAAACAGTAAAAAAGGGTAGTAAAGATAATGTATTTCTCCCTTCTCTTTCTACTAATTATCTTTWGAAACAGAGAAAAAGAGACACCAGACAGCACTAAACTTTCGTTGCTTTGATTTATGACATTGAAAAATTGTTATAGAAAAAAGAAGAATAAGGTGAGATAGGGTTAGAAGAAGAAGAAGAAGAACGAATATGATGACGTTGACGGCAAAGATCATGGAAACTGAGAGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGATTGATAGAGATTAAAGTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>ATAAATCAAAGCAACGAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTGATTGATAGAGATTAAAGTTTTCTAAAAACAAAGTTTAAGCTTTTTGAATTTCCCGTTTGTTCAGTTTTGCCTAGTTTTGGAGAAAAACACCAACTTCAAACATTTGGGTTTTCACTGAAAAATGAACAATGAAACAGTAAAAAAGGGTAGTAAAGATAATGTATTTCTCCCTTCTCTTTCTACTAATTATCTTTAGAAACAGAGAAAAAGAGACACCAGACAGCACTAAACTTTCGTTGCTTTGATTTAT</canonical_amplicon>
		<polymorphic_amplicon>TTGATTGATAGAGATTAAAGTTTTCTAAAAACAAAGTTTAAGCTTTTTGAATTTCCCGTTTGTTCAGTTTTGCCTAGTTTTGGAGAAAAACACCAACTTCAAACATTTGGGTTTTCACTGAAAAATGAACAATGAAACAGTAAAAAAGGGTAGTAAAGATAATGTATTTCTCCCTTCTCTTTCTACTAATTATCTTTWGAAACAGAGAAAAAGAGACACCAGACAGCACTAAACTTTCGTTGCTTTGATTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14891</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>149860</contig_pos>
        <strand>+</strand>
        <context>TGGAAACTGA[A/G]AGAAAAATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAGAAGAACGAATATGATGACGTTGACGGCAAAGATCATGGAAACTGA</left_flank>
        <right_flank>AGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAAAATTTTGGGAAGTCTATATTCATGAAGAAATATGAAGTTTGAGTTTGGTAAAATAAGTCATAAGGAAAAAAAGTACAGAAATTTGAAAATTACTGTTTCAAATTGAATATTTTCATGAATAAAACTTCAAACTTGATTGATAGAGATTAAAGTTTTCTAAAAACAAAGTTTAAGCTTTTTGAATTTCCCGTTTGTTCAGTTTTGCCTAGTTTTGGAGAAAAACACCAACTTCAAACATTTGGGTTTTCACTGAAAAATGAACAATGAAACAGTAAAAAAGGGTAGTAAAGATAATGTATTTCTCCCTTCTCTTTCTACTAATTATCTTTAGAAACAGAGAAAAAGAGACACCAGACAGCACTAAACTTTCGTTGCTTTGATTTATGACATTGAAAAATTGTTATAGAAAAAAGAAGAATAAGGTGAGATAGGGTTAGAAGAAGAAGAAGAAGAACGAATATGATGACGTTGACGGCAAAGATCATGGAAACTGAGAGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCA</canonical>
            <polymorphic>ATGAAAATTTTGGGAAGTCTATATTCATGAAGAAATATGAAGTTTGAGTTTGGTAAAATAAGTCATAAGGAAAAAAAGTACAGAAATTTGAAAATTACTGTTTCAAATTGAATATTTTCATGAATAAAACTTCAAACTTGATTGATAGAGATTAAAGTTTTCTAAAAACAAAGTTTAAGCTTTTTGAATTTCCCGTTTGTTCAGTTTTGCCTAGTTTTGGAGAAAAACACCAACTTCAAACATTTGGGTTTTCACTGAAAAATGAACAATGAAACAGTAAAAAAGGGTAGTAAAGATAATGTATTTCTCCCTTCTCTTTCTACTAATTATCTTTAGAAACAGAGAAAAAGAGACACCAGACAGCACTAAACTTTCGTTGCTTTGATTTATGACATTGAAAAATTGTTATAGAAAAAAGAAGAATAAGGTGAGATAGGGTTAGAAGAAGAAGAAGAAGAACGAATATGATGACGTTGACGGCAAAGATCATGGAAACTGARAGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTTGATTTATGACATTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGAATTCCCTAAAACCTCTGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTTTGATTTATGACATTGAAAAATTGTTATAGAAAAAAGAAGAATAAGGTGAGATAGGGTTAGAAGAAGAAGAAGAAGAACGAATATGATGACGTTGACGGCAAAGATCATGGAAACTGAGAGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCT</canonical_amplicon>
		<polymorphic_amplicon>GCTTTGATTTATGACATTGAAAAATTGTTATAGAAAAAAGAAGAATAAGGTGAGATAGGGTTAGAAGAAGAAGAAGAAGAACGAATATGATGACGTTGACGGCAAAGATCATGGAAACTGARAGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14892</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>149988</contig_pos>
        <strand>+</strand>
        <context>AGGGAATTCT[C/T]GAAGATTAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCT</left_flank>
        <right_flank>GAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTCAAACTTGATTGATAGAGATTAAAGTTTTCTAAAAACAAAGTTTAAGCTTTTTGAATTTCCCGTTTGTTCAGTTTTGCCTAGTTTTGGAGAAAAACACCAACTTCAAACATTTGGGTTTTCACTGAAAAATGAACAATGAAACAGTAAAAAAGGGTAGTAAAGATAATGTATTTCTCCCTTCTCTTTCTACTAATTATCTTTAGAAACAGAGAAAAAGAGACACCAGACAGCACTAAACTTTCGTTGCTTTGATTTATGACATTGAAAAATTGTTATAGAAAAAAGAAGAATAAGGTGAGATAGGGTTAGAAGAAGAAGAAGAAGAACGAATATGATGACGTTGACGGCAAAGATCATGGAAACTGAGAGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGA</canonical>
            <polymorphic>ACTTCAAACTTGATTGATAGAGATTAAAGTTTTCTAAAAACAAAGTTTAAGCTTTTTGAATTTCCCGTTTGTTCAGTTTTGCCTAGTTTTGGAGAAAAACACCAACTTCAAACATTTGGGTTTTCACTGAAAAATGAACAATGAAACAGTAAAAAAGGGTAGTAAAGATAATGTATTTCTCCCTTCTCTTTCTACTAATTATCTTTAGAAACAGAGAAAAAGAGACACCAGACAGCACTAAACTTTCGTTGCTTTGATTTATGACATTGAAAAATTGTTATAGAAAAAAGAAGAATAAGGTGAGATAGGGTTAGAAGAAGAAGAAGAAGAACGAATATGATGACGTTGACGGCAAAGATCATGGAAACTGAGAGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTYGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 332 117 51</canonical_bands>
                <polymorphic_bands>617 332 51</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAAAGATCATGGAAACTGA</pcr_primer_p1>
		<pcr_primer_p2>CTTACTGTTGCAAAATTACTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GCAAAGATCATGGAAACTGAGAGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAG</canonical_amplicon>
		<polymorphic_amplicon>GCAAAGATCATGGAAACTGAGAGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTYGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14893</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>150022</contig_pos>
        <strand>+</strand>
        <context>AATTATAGCG[A/G]AAGTAKTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCG</left_flank>
        <right_flank>AAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAAACAAAGTTTAAGCTTTTTGAATTTCCCGTTTGTTCAGTTTTGCCTAGTTTTGGAGAAAAACACCAACTTCAAACATTTGGGTTTTCACTGAAAAATGAACAATGAAACAGTAAAAAAGGGTAGTAAAGATAATGTATTTCTCCCTTCTCTTTCTACTAATTATCTTTAGAAACAGAGAAAAAGAGACACCAGACAGCACTAAACTTTCGTTGCTTTGATTTATGACATTGAAAAATTGTTATAGAAAAAAGAAGAATAAGGTGAGATAGGGTTAGAAGAAGAAGAAGAAGAACGAATATGATGACGTTGACGGCAAAGATCATGGAAACTGAGAGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAAT</canonical>
            <polymorphic>TAAAAACAAAGTTTAAGCTTTTTGAATTTCCCGTTTGTTCAGTTTTGCCTAGTTTTGGAGAAAAACACCAACTTCAAACATTTGGGTTTTCACTGAAAAATGAACAATGAAACAGTAAAAAAGGGTAGTAAAGATAATGTATTTCTCCCTTCTCTTTCTACTAATTATCTTTAGAAACAGAGAAAAAGAGACACCAGACAGCACTAAACTTTCGTTGCTTTGATTTATGACATTGAAAAATTGTTATAGAAAAAAGAAGAATAAGGTGAGATAGGGTTAGAAGAAGAAGAAGAAGAACGAATATGATGACGTTGACGGCAAAGATCATGGAAACTGAGAGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGRAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCGGATTAAAAACACCAC</pcr_primer_p1>
		<pcr_primer_p2>TATTTGAAACAGTAACATTTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>TTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGRAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14894</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>150028</contig_pos>
        <strand>+</strand>
        <context>AGCGRAAGTA[G/T]TGAATCAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTA</left_flank>
        <right_flank>TGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAGTTTAAGCTTTTTGAATTTCCCGTTTGTTCAGTTTTGCCTAGTTTTGGAGAAAAACACCAACTTCAAACATTTGGGTTTTCACTGAAAAATGAACAATGAAACAGTAAAAAAGGGTAGTAAAGATAATGTATTTCTCCCTTCTCTTTCTACTAATTATCTTTAGAAACAGAGAAAAAGAGACACCAGACAGCACTAAACTTTCGTTGCTTTGATTTATGACATTGAAAAATTGTTATAGAAAAAAGAAGAATAAGGTGAGATAGGGTTAGAAGAAGAAGAAGAAGAACGAATATGATGACGTTGACGGCAAAGATCATGGAAACTGAGAGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCT</canonical>
            <polymorphic>CAAAGTTTAAGCTTTTTGAATTTCCCGTTTGTTCAGTTTTGCCTAGTTTTGGAGAAAAACACCAACTTCAAACATTTGGGTTTTCACTGAAAAATGAACAATGAAACAGTAAAAAAGGGTAGTAAAGATAATGTATTTCTCCCTTCTCTTTCTACTAATTATCTTTAGAAACAGAGAAAAAGAGACACCAGACAGCACTAAACTTTCGTTGCTTTGATTTATGACATTGAAAAATTGTTATAGAAAAAAGAAGAATAAGGTGAGATAGGGTTAGAAGAAGAAGAAGAAGAACGAATATGATGACGTTGACGGCAAAGATCATGGAAACTGAGAGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAKTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>169 110 101 78 75 71 67 65 61 30 29 27 25 24 22 14 10 8 3 3 2 2 2 2</canonical_bands>
                <polymorphic_bands>236 110 101 78 75 71 65 61 30 29 27 25 24 22 14 10 8 3 3 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCGGATTAAAAACACCAC</pcr_primer_p1>
		<pcr_primer_p2>TATTTGAAACAGTAACATTTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>TTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAKTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14895</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>150078</contig_pos>
        <strand></strand>
        <context>AACAGTAAGA[A/C]MGRATAGKWC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGA</left_flank>
        <right_flank>TGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGAAAAACACCAACTTCAAACATTTGGGTTTTCACTGAAAAATGAACAATGAAACAGTAAAAAAGGGTAGTAAAGATAATGTATTTCTCCCTTCTCTTTCTACTAATTATCTTTAGAAACAGAGAAAAAGAGACACCAGACAGCACTAAACTTTCGTTGCTTTGATTTATGACATTGAAAAATTGTTATAGAAAAAAGAAGAATAAGGTGAGATAGGGTTAGAAGAAGAAGAAGAAGAACGAATATGATGACGTTGACGGCAAAGATCATGGAAACTGAGAGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACT</canonical>
            <polymorphic>GGAGAAAAACACCAACTTCAAACATTTGGGTTTTCACTGAAAAATGAACAATGAAACAGTAAAAAAGGGTAGTAAAGATAATGTATTTCTCCCTTCTCTTTCTACTAATTATCTTTAGAAACAGAGAAAAAGAGACACCAGACAGCACTAAACTTTCGTTGCTTTGATTTATGACATTGAAAAATTGTTATAGAAAAAAGAAGAATAAGGTGAGATAGGGTTAGAAGAAGAAGAAGAAGAACGAATATGATGACGTTGACGGCAAAGATCATGGAAACTGAGAGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAMTGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATGCAT</site>
                <isoschizomers>
                    <enzyme>BfrBI</enzyme>
                    <enzyme>EcoT22I</enzyme>
                    <enzyme>Mph1103I</enzyme>
                    <enzyme>NsiI</enzyme>
                    <enzyme>Ppu10I</enzyme>
                    <enzyme>Zsp2I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCGGATTAAAAACACCAC</pcr_primer_p1>
		<pcr_primer_p2>TATTTGAAACAGTAACATTTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>TTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAMTGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14896</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>150086</contig_pos>
        <strand>+</strand>
        <context>GAMMGRATAG[G/T]WCTCGGAAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAG</left_flank>
        <right_flank>TCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACCAACTTCAAACATTTGGGTTTTCACTGAAAAATGAACAATGAAACAGTAAAAAAGGGTAGTAAAGATAATGTATTTCTCCCTTCTCTTTCTACTAATTATCTTTAGAAACAGAGAAAAAGAGACACCAGACAGCACTAAACTTTCGTTGCTTTGATTTATGACATTGAAAAATTGTTATAGAAAAAAGAAGAATAAGGTGAGATAGGGTTAGAAGAAGAAGAAGAAGAACGAATATGATGACGTTGACGGCAAAGATCATGGAAACTGAGAGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACTTGCGATTT</canonical>
            <polymorphic>ACACCAACTTCAAACATTTGGGTTTTCACTGAAAAATGAACAATGAAACAGTAAAAAAGGGTAGTAAAGATAATGTATTTCTCCCTTCTCTTTCTACTAATTATCTTTAGAAACAGAGAAAAAGAGACACCAGACAGCACTAAACTTTCGTTGCTTTGATTTATGACATTGAAAAATTGTTATAGAAAAAAGAAGAATAAGGTGAGATAGGGTTAGAAGAAGAAGAAGAAGAACGAATATGATGACGTTGACGGCAAAGATCATGGAAACTGAGAGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGKTCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACTTGCGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>502 258 240</canonical_bands>
                <polymorphic_bands>742 258</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCGGATTAAAAACACCAC</pcr_primer_p1>
		<pcr_primer_p2>TATTTGAAACAGTAACATTTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>TTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGKTCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14897</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>150103</contig_pos>
        <strand></strand>
        <context>AAGTCTGGAG[G/C]SCGAATGTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAG</left_flank>
        <right_flank>TCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGGTTTTCACTGAAAAATGAACAATGAAACAGTAAAAAAGGGTAGTAAAGATAATGTATTTCTCCCTTCTCTTTCTACTAATTATCTTTAGAAACAGAGAAAAAGAGACACCAGACAGCACTAAACTTTCGTTGCTTTGATTTATGACATTGAAAAATTGTTATAGAAAAAAGAAGAATAAGGTGAGATAGGGTTAGAAGAAGAAGAAGAAGAACGAATATGATGACGTTGACGGCAAAGATCATGGAAACTGAGAGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACTTGCGATTTTTTAGAAACCTGAAACA</canonical>
            <polymorphic>TTGGGTTTTCACTGAAAAATGAACAATGAAACAGTAAAAAAGGGTAGTAAAGATAATGTATTTCTCCCTTCTCTTTCTACTAATTATCTTTAGAAACAGAGAAAAAGAGACACCAGACAGCACTAAACTTTCGTTGCTTTGATTTATGACATTGAAAAATTGTTATAGAAAAAAGAAGAATAAGGTGAGATAGGGTTAGAAGAAGAAGAAGAAGAACGAATATGATGACGTTGACGGCAAAGATCATGGAAACTGAGAGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGSTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACTTGCGATTTTTTAGAAACCTGAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCGGATTAAAAACACCAC</pcr_primer_p1>
		<pcr_primer_p2>TATTTGAAACAGTAACATTTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>TTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGSTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14899</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>150820</contig_pos>
        <strand>+</strand>
        <context>AGATCCACGA[A/G]TTGGAGTCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACTCCTTTGGTTTCTGGAATGAATAAACTGAAAATGAGAAGATCCACGA</left_flank>
        <right_flank>TTGGAGTCCAATGAGAACTGCATAAAGAATCCATTCAGCGATGTCGCTCT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACTTGCGATTTTTTAGAAACCTGAAACAGTGATCTTTGGATTATTCAAAATTTTTATTGTCTGATAAGTGATCATTAAATTACTTGAGAAGGTGTGGTAAATTAGAACACTAAAAACTCAAAAAAAAATAATAAATTTCAATCAGATTTCCCGAAAATTCGTTCATGTTTCGGAGGTAAATGATTTTCCAAATGAACTCCTTTGGTTTCTGGAATGAATAAACTGAAAATGAGAAGATCCACGAGTTGGAGTCCAATGAGAACTGCATAAAGAATCCATTCAGCGATGTCGCTCTAAAAAATTAGAGAAAATTACTGTTCCATAAAAAGTGTCAGGAAAAGAAGGTAACTTCTTTATTAAAAGGATGGTAATCTTCCGTTTTTCAGAAATTTCGAATATTTCAAAGTTTGAATTTCTGGTTTTCGGAAATGACATGTGCGGTATTGGTCAATAAGAAATACCAAACCGAATTTTCGGTGGATTTTCGGCCATTTCGACCATTCTCGGGAGTCTAGAGATCGGTCGTCAGGTTTCCGATTACTTTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATTGAAAATATTGCATTCACAGAATTTTTTGAAAATTTCTAGTTTTTCAGCTATTTGCCGATATCTGAAAGACACCGCTTTTTTGCCAGTTACTGTACTGAAAGCGTGAAAAAAGCAGGTGTGTCTCAGAAATCGGCAAATGTCTGACAAATAGGAATTTTTAAAAAAAT</canonical>
            <polymorphic>ATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACTTGCGATTTTTTAGAAACCTGAAACAGTGATCTTTGGATTATTCAAAATTTTTATTGTCTGATAAGTGATCATTAAATTACTTGAGAAGGTGTGGTAAATTAGAACACTAAAAACTCAAAAAAAAATAATAAATTTCAATCAGATTTCCCGAAAATTCGTTCATGTTTCGGAGGTAAATGATTTTCCAAATGAACTCCTTTGGTTTCTGGAATGAATAAACTGAAAATGAGAAGATCCACGARTTGGAGTCCAATGAGAACTGCATAAAGAATCCATTCAGCGATGTCGCTCTAAAAAATTAGAGAAAATTACTGTTCCATAAAAAGTGTCAGGAAAAGAAGGTAACTTCTTTATTAAAAGGATGGTAATCTTCCGTTTTTCAGAAATTTCGAATATTTCAAAGTTTGAATTTCTGGTTTTCGGAAATGACATGTGCGGTATTGGTCAATAAGAAATACCAAACCGAATTTTCGGTGGATTTTCGGCCATTTCGACCATTCTCGGGAGTCTAGAGATCGGTCGTCAGGTTTCCGATTACTTTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATTGAAAATATTGCATTCACAGAATTTTTTGAAAATTTCTAGTTTTTCAGCTATTTGCCGATATCTGAAAGACACCGCTTTTTTGCCAGTTACTGTACTGAAAGCGTGAAAAAAGCAGGTGTGTCTCAGAAATCGGCAAATGTCTGACAAATAGGAATTTTTAAAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATGATTTTCCAAATGAACTC</pcr_primer_p1>
		<pcr_primer_p2>CGAAAACCAGAAATTCAAACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAAATGATTTTCCAAATGAACTCCTTTGGTTTCTGGAATGAATAAACTGAAAATGAGAAGATCCACGAGTTGGAGTCCAATGAGAACTGCATAAAGAATCCATTCAGCGATGTCGCTCTAAAAAATTAGAGAAAATTACTGTTCCATAAAAAGTGTCAGGAAAAGAAGGTAACTTCTTTATTAAAAGGATGGTAATCTTCCGTTTTTCAGAAATTTCGAATATTTCAAAGTTTGAATTTCTGGTTTTCG</canonical_amplicon>
		<polymorphic_amplicon>TAAATGATTTTCCAAATGAACTCCTTTGGTTTCTGGAATGAATAAACTGAAAATGAGAAGATCCACGARTTGGAGTCCAATGAGAACTGCATAAAGAATCCATTCAGCGATGTCGCTCTAAAAAATTAGAGAAAATTACTGTTCCATAAAAAGTGTCAGGAAAAGAAGGTAACTTCTTTATTAAAAGGATGGTAATCTTCCGTTTTTCAGAAATTTCGAATATTTCAAAGTTTGAATTTCTGGTTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14900</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>150675</contig_pos>
        <strand>+</strand>
        <context>AGGTGTGGTA[A/G]ATTAGAACAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTTATTGTCTGATAAGTGATCATTAAATTACTTGAGAAGGTGTGGTA</left_flank>
        <right_flank>ATTAGAACACTAAAAACTCAAAAAAAAATAATAAATTTCAATCAGATTTC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACTTGCGATTTTTTAGAAACCTGAAACAGTGATCTTTGGATTATTCAAAATTTTTATTGTCTGATAAGTGATCATTAAATTACTTGAGAAGGTGTGGTAAATTAGAACACTAAAAACTCAAAAAAAAATAATAAATTTCAATCAGATTTCCCGAAAATTCGTTCATGTTTCGGAGGTAAATGATTTTCCAAATGAACTCCTTTGGTTTCTGGAATGAATAAACTGAAAATGAGAAGATCCACGAGTTGGAGTCCAATGAGAACTGCATAAAGAATCCATTCAGCGATGTCGCTCTAAAAAATTAGAGAAAATTACTGTTCCATAAAAAGTGTCAGGAAAAGAAGGTAACTTCTTTATTAAAAGGATGGTAATCTTCCGTTTTTCAGAAATTTCGAATATTTCAAAGTTTGAATTTCTGGTTTTCGGAAATGACATGTGCGGTATTGGTCAATAAGAAATACCAAACCGAATTTTCGGTGGATTTTCGGCCATTTCGACCATTCTCGGGAGTCTAGAGATCGGTCGTCAGGTTTCCGATTACTTTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATTGAAAATATTGCATTCACAGAAT</canonical>
            <polymorphic>ACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACTTGCGATTTTTTAGAAACCTGAAACAGTGATCTTTGGATTATTCAAAATTTTTATTGTCTGATAAGTGATCATTAAATTACTTGAGAAGGTGTGGTARATTAGAACACTAAAAACTCAAAAAAAAATAATAAATTTCAATCAGATTTCCCGAAAATTCGTTCATGTTTCGGAGGTAAATGATTTTCCAAATGAACTCCTTTGGTTTCTGGAATGAATAAACTGAAAATGAGAAGATCCACGAGTTGGAGTCCAATGAGAACTGCATAAAGAATCCATTCAGCGATGTCGCTCTAAAAAATTAGAGAAAATTACTGTTCCATAAAAAGTGTCAGGAAAAGAAGGTAACTTCTTTATTAAAAGGATGGTAATCTTCCGTTTTTCAGAAATTTCGAATATTTCAAAGTTTGAATTTCTGGTTTTCGGAAATGACATGTGCGGTATTGGTCAATAAGAAATACCAAACCGAATTTTCGGTGGATTTTCGGCCATTTCGACCATTCTCGGGAGTCTAGAGATCGGTCGTCAGGTTTCCGATTACTTTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATTGAAAATATTGCATTCACAGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>144 129 84 83 79 78 58 54 53 36 34 29 23 22 22 20 16 15 11 10</canonical_bands>
                <polymorphic_bands>144 129 84 83 79 78 58 56 54 53 36 29 23 22 20 16 15 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTCAAATATAACTTGCGATTTT</pcr_primer_p1>
		<pcr_primer_p2>TGGATCTTCTCATTTTCAGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TGTCAAATATAACTTGCGATTTTTTAGAAACCTGAAACAGTGATCTTTGGATTATTCAAAATTTTTATTGTCTGATAAGTGATCATTAAATTACTTGAGAAGGTGTGGTAAATTAGAACACTAAAAACTCAAAAAAAAATAATAAATTTCAATCAGATTTCCCGAAAATTCGTTCATGTTTCGGAGGTAAATGATTTTCCAAATGAACTCCTTTGGTTTCTGGAATGAATAAACTGAAAATGAGAAGATCCA</canonical_amplicon>
		<polymorphic_amplicon>TGTCAAATATAACTTGCGATTTTTTAGAAACCTGAAACAGTGATCTTTGGATTATTCAAAATTTTTATTGTCTGATAAGTGATCATTAAATTACTTGAGAAGGTGTGGTARATTAGAACACTAAAAACTCAAAAAAAAATAATAAATTTCAATCAGATTTCCCGAAAATTCGTTCATGTTTCGGAGGTAAATGATTTTCCAAATGAACTCCTTTGGTTTCTGGAATGAATAAACTGAAAATGAGAAGATCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14901</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>150609</contig_pos>
        <strand>+</strand>
        <context>AAACAGTGAT[C/T]TTTGGATTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATGCTGTCAAATATAACTTGCGATTTTTTAGAAACCTGAAACAGTGAT</left_flank>
        <right_flank>TTTGGATTATTCAAAATTTTTATTGTCTGATAAGTGATCATTAAATTACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACTTGCGATTTTTTAGAAACCTGAAACAGTGATCTTTGGATTATTCAAAATTTTTATTGTCTGATAAGTGATCATTAAATTACTTGAGAAGGTGTGGTAAATTAGAACACTAAAAACTCAAAAAAAAATAATAAATTTCAATCAGATTTCCCGAAAATTCGTTCATGTTTCGGAGGTAAATGATTTTCCAAATGAACTCCTTTGGTTTCTGGAATGAATAAACTGAAAATGAGAAGATCCACGAGTTGGAGTCCAATGAGAACTGCATAAAGAATCCATTCAGCGATGTCGCTCTAAAAAATTAGAGAAAATTACTGTTCCATAAAAAGTGTCAGGAAAAGAAGGTAACTTCTTTATTAAAAGGATGGTAATCTTCCGTTTTTCAGAAATTTCGAATATTTCAAAGTTTGAATTTCTGGTTTTCGGAAATGACATGTGCGGTATTGGTCAATAAGAAATACCAAACCGAATTTTCGGTGGATTTTCGGCCATTTCGACCATTCTCGGGAGTCTAGAGATCGGTCGTCAGGTTTC</canonical>
            <polymorphic>GTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACTTGCGATTTTTTAGAAACCTGAAACAGTGATYTTTGGATTATTCAAAATTTTTATTGTCTGATAAGTGATCATTAAATTACTTGAGAAGGTGTGGTAAATTAGAACACTAAAAACTCAAAAAAAAATAATAAATTTCAATCAGATTTCCCGAAAATTCGTTCATGTTTCGGAGGTAAATGATTTTCCAAATGAACTCCTTTGGTTTCTGGAATGAATAAACTGAAAATGAGAAGATCCACGAGTTGGAGTCCAATGAGAACTGCATAAAGAATCCATTCAGCGATGTCGCTCTAAAAAATTAGAGAAAATTACTGTTCCATAAAAAGTGTCAGGAAAAGAAGGTAACTTCTTTATTAAAAGGATGGTAATCTTCCGTTTTTCAGAAATTTCGAATATTTCAAAGTTTGAATTTCTGGTTTTCGGAAATGACATGTGCGGTATTGGTCAATAAGAAATACCAAACCGAATTTTCGGTGGATTTTCGGCCATTTCGACCATTCTCGGGAGTCTAGAGATCGGTCGTCAGGTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>496 281 166 39 18</canonical_bands>
                <polymorphic_bands>535 281 166 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCGGTGTTTTGAACATTAT</pcr_primer_p1>
		<pcr_primer_p2>ATTCCAGAAACCAAAGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCCGGTGTTTTGAACATTATGCTGTCAAATATAACTTGCGATTTTTTAGAAACCTGAAACAGTGATCTTTGGATTATTCAAAATTTTTATTGTCTGATAAGTGATCATTAAATTACTTGAGAAGGTGTGGTAAATTAGAACACTAAAAACTCAAAAAAAAATAATAAATTTCAATCAGATTTCCCGAAAATTCGTTCATGTTTCGGAGGTAAATGATTTTCCAAATGAACTCCTTTGGTTTCTGGAAT</canonical_amplicon>
		<polymorphic_amplicon>TCCGGTGTTTTGAACATTATGCTGTCAAATATAACTTGCGATTTTTTAGAAACCTGAAACAGTGATYTTTGGATTATTCAAAATTTTTATTGTCTGATAAGTGATCATTAAATTACTTGAGAAGGTGTGGTAAATTAGAACACTAAAAACTCAAAAAAAAATAATAAATTTCAATCAGATTTCCCGAAAATTCGTTCATGTTTCGGAGGTAAATGATTTTCCAAATGAACTCCTTTGGTTTCTGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14902</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>150563</contig_pos>
        <strand>+</strand>
        <context>TGAACATTAT[C/G]CTGTCAAATA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTAT</left_flank>
        <right_flank>CTGTCAAATATAACTTGCGATTTTTTAGAAACCTGAAACAGTGATCTTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACTTGCGATTTTTTAGAAACCTGAAACAGTGATCTTTGGATTATTCAAAATTTTTATTGTCTGATAAGTGATCATTAAATTACTTGAGAAGGTGTGGTAAATTAGAACACTAAAAACTCAAAAAAAAATAATAAATTTCAATCAGATTTCCCGAAAATTCGTTCATGTTTCGGAGGTAAATGATTTTCCAAATGAACTCCTTTGGTTTCTGGAATGAATAAACTGAAAATGAGAAGATCCACGAGTTGGAGTCCAATGAGAACTGCATAAAGAATCCATTCAGCGATGTCGCTCTAAAAAATTAGAGAAAATTACTGTTCCATAAAAAGTGTCAGGAAAAGAAGGTAACTTCTTTATTAAAAGGATGGTAATCTTCCGTTTTTCAGAAATTTCGAATATTTCAAAGTTTGAATTTCTGGTTTTCGGAAATGACATGTGCGGTATTGGTCAATAAGAAATACCAAACCGAATTTTCGGTGGATTTTCGG</canonical>
            <polymorphic>TTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATSCTGTCAAATATAACTTGCGATTTTTTAGAAACCTGAAACAGTGATCTTTGGATTATTCAAAATTTTTATTGTCTGATAAGTGATCATTAAATTACTTGAGAAGGTGTGGTAAATTAGAACACTAAAAACTCAAAAAAAAATAATAAATTTCAATCAGATTTCCCGAAAATTCGTTCATGTTTCGGAGGTAAATGATTTTCCAAATGAACTCCTTTGGTTTCTGGAATGAATAAACTGAAAATGAGAAGATCCACGAGTTGGAGTCCAATGAGAACTGCATAAAGAATCCATTCAGCGATGTCGCTCTAAAAAATTAGAGAAAATTACTGTTCCATAAAAAGTGTCAGGAAAAGAAGGTAACTTCTTTATTAAAAGGATGGTAATCTTCCGTTTTTCAGAAATTTCGAATATTTCAAAGTTTGAATTTCTGGTTTTCGGAAATGACATGTGCGGTATTGGTCAATAAGAAATACCAAACCGAATTTTCGGTGGATTTTCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTTGGTAACGTATTTGTGAAA</pcr_primer_p1>
		<pcr_primer_p2>GGGAAATCTGATTGAAATTTATTA</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>AGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACTTGCGATTTTTTAGAAACCTGAAACAGTGATCTTTGGATTATTCAAAATTTTTATTGTCTGATAAGTGATCATTAAATTACTTGAGAAGGTGTGGTAAATTAGAACACTAAAAACTCAAAAAAAAATAATAAATTTCAATCAGATTTCCC</canonical_amplicon>
		<polymorphic_amplicon>AGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATSCTGTCAAATATAACTTGCGATTTTTTAGAAACCTGAAACAGTGATCTTTGGATTATTCAAAATTTTTATTGTCTGATAAGTGATCATTAAATTACTTGAGAAGGTGTGGTAAATTAGAACACTAAAAACTCAAAAAAAAATAATAAATTTCAATCAGATTTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14903</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>150515</contig_pos>
        <strand>+</strand>
        <context>ATTTATTTCA[C/T]AGTAAATGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCA</left_flank>
        <right_flank>AGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACTTGCGATTTTTTAGAAACCTGAAACAGTGATCTTTGGATTATTCAAAATTTTTATTGTCTGATAAGTGATCATTAAATTACTTGAGAAGGTGTGGTAAATTAGAACACTAAAAACTCAAAAAAAAATAATAAATTTCAATCAGATTTCCCGAAAATTCGTTCATGTTTCGGAGGTAAATGATTTTCCAAATGAACTCCTTTGGTTTCTGGAATGAATAAACTGAAAATGAGAAGATCCACGAGTTGGAGTCCAATGAGAACTGCATAAAGAATCCATTCAGCGATGTCGCTCTAAAAAATTAGAGAAAATTACTGTTCCATAAAAAGTGTCAGGAAAAGAAGGTAACTTCTTTATTAAAAGGATGGTAATCTTCCGTTTTTCAGAAATTTCGAATATTTCAAAGTTTGAATTTCTGGTTTTCGGAAATGACATGTGCG</canonical>
            <polymorphic>ATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCAYAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACTTGCGATTTTTTAGAAACCTGAAACAGTGATCTTTGGATTATTCAAAATTTTTATTGTCTGATAAGTGATCATTAAATTACTTGAGAAGGTGTGGTAAATTAGAACACTAAAAACTCAAAAAAAAATAATAAATTTCAATCAGATTTCCCGAAAATTCGTTCATGTTTCGGAGGTAAATGATTTTCCAAATGAACTCCTTTGGTTTCTGGAATGAATAAACTGAAAATGAGAAGATCCACGAGTTGGAGTCCAATGAGAACTGCATAAAGAATCCATTCAGCGATGTCGCTCTAAAAAATTAGAGAAAATTACTGTTCCATAAAAAGTGTCAGGAAAAGAAGGTAACTTCTTTATTAAAAGGATGGTAATCTTCCGTTTTTCAGAAATTTCGAATATTTCAAAGTTTGAATTTCTGGTTTTCGGAAATGACATGTGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>288 177 125 124 107 87 42 36 14</canonical_bands>
                <polymorphic_bands>288 212 177 124 107 42 36 14</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>169 132 107 90 78 75 71 57 39 35 30 29 27 24 15 13 3 2 2 2</canonical_bands>
                <polymorphic_bands>169 132 107 90 78 75 71 62 57 39 30 29 24 15 13 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGACATGCTATGCCTTAACC</pcr_primer_p1>
		<pcr_primer_p2>AAATCGCAAGTTATATTTGACAG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACTTGCGATTT</canonical_amplicon>
		<polymorphic_amplicon>GTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCAYAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACTTGCGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14904</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>17280</contig_pos>
        <strand>+</strand>
        <context>TTAATTTCAG[A/G]TTGTGAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGCAGAAACCAGAAGGTTGATCTCCCGACTGGTTTCAAATTAATTTCAG</left_flank>
        <right_flank>TTGTGAAAAATAGATTTACTCACTATTGTCGTTGTTCATTGTCAGAGTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCCATTTCGACGTCTCTCCTCAACAGTCTCCTCTAACTGGCTAACATGCGTCTCCCATTCGACCCATTCGATTTTCAATAGTTTCAGCTCAATCCATAGCGATTCGAATCGTTTTAGTGTTTCGGCTGTTCTCTCGTTCGACGTCTTCAGTATTGATTCTTTGTCTAGCTTACTGCCTGAAAAATTTGAAATTAAAAAATTCAGTTATCTTGATATTGGTGAAATTCAGAAAGGTAGAAATTCGAATATCCTGTAAATTCGGTAATCCTTAAATTCCAGAACTTTAGAACTTCAGAGACTCGATGATTCAAATTTTACGGTTCGAAATTTCAAAATTCAGTGATCCAGAATTCAAAATTTTGGGAAATTCGAACATTCAGAAATTTTGGGGACCCGGAAATTGGGAATTTCTGAAATTAGAACTTAAAGTGTCAGATATTATACAATAAGCAGAAACCAGAAGGTTGATCTCCCGACTGGTTTCAAATTAATTTCAGATTGTGAAAAATAGATTTACTCACTATTGTCGTTGTTCATTGTCAGAGTTAGTTTATTAATGTAACCAGCACATTTGGCTTGTGGGTTTTCGGCGTTCAACTGTGTGTATTCCTTTATCCAACGGAGGAGCAAAGTTACACTATCCGCCGTTCTGAAATTGATAGAATATTGTATTTTTTAAAACATTCCTGAAATTTCGAACAAACCTCCAAAGAATGATTTTCTCATCAATGTGTTGCAGATATTGCAGGAGAATATAGTGTGTGATCAAAATGCGCAAAGTTGAAATGCGCGGTTCATTCTCCTCTTCGATCTGTGCGTATCTTGCTCTCAATGGTTCCGAGAATTCTGGAGCAACTGGACGTCCTCCGAGACCTCCGTGCTTGACCGCTTCCTCGAATTCGTCTCGTCGTTTTGGTAGATCTTCCAGATACTTTTGATGCTCACTGATCAATTTTTGAAGCATTCCAACTGTTTTCTTGGCATCGTTTGCATCAAGA</canonical>
            <polymorphic>ATTCCATTTCGACGTCTCTCCTCAACAGTCTCCTCTAACTGGCTAACATGCGTCTCCCATTCGACCCATTCGATTTTCAATAGTTTCAGCTCAATCCATAGCGATTCGAATCGTTTTAGTGTTTCGGCTGTTCTCTCGTTCGACGTCTTCAGTATTGATTCTTTGTCTAGCTTACTGCCTGAAAAATTTGAAATTAAAAAATTCAGTTATCTTGATATTGGTGAAATTCAGAAAGGTAGAAATTCGAATATCCTGTAAATTCGGTAATCCTTAAATTCCAGAACTTTAGAACTTCAGAGACTCGATGATTCAAATTTTACGGTTCGAAATTTCAAAATTCAGTGATCCAGAATTCAAAATTTTGGGAAATTCGAACATTCAGAAATTTTGGGGACCCGGAAATTGGGAATTTCTGAAATTAGAACTTAAAGTGTCAGATATTATACAATAAGCAGAAACCAGAAGGTTGATCTCCCGACTGGTTTCAAATTAATTTCAGRTTGTGAAAAATAGATTTACTCACTATTGTCGTTGTTCATTGTCAGAGTTAGTTTATTAATGTAACCAGCACATTTGGCTTGTGGGTTTTCGGCGTTCAACTGTGTGTATTCCTTTATCCAACGGAGGAGCAAAGTTACACTATCCGCCGTTCTGAAATTGATAGAATATTGTATTTTTTAAAACATTCCTGAAATTTCGAACAAACCTCCAAAGAATGATTTTCTCATCAATGTGTTGCAGATATTGCAGGAGAATATAGTGTGTGATCAAAATGCGCAAAGTTGAAATGCGCGGTTCATTCTCCTCTTCGATCTGTGCGTATCTTGCTCTCAATGGTTCCGAGAATTCTGGAGCAACTGGACGTCCTCCGAGACCTCCGTGCTTGACCGCTTCCTCGAATTCGTCTCGTCGTTTTGGTAGATCTTCCAGATACTTTTGATGCTCACTGATCAATTTTTGAAGCATTCCAACTGTTTTCTTGGCATCGTTTGCATCAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>230 188 130 109 85 66 62 46 33 29 22</canonical_bands>
                <polymorphic_bands>230 188 130 109 108 85 66 33 29 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTTCAAAATTCAGTGATCC</pcr_primer_p1>
		<pcr_primer_p2>CCAAATGTGCTGGTTACATTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAATTTCAAAATTCAGTGATCCAGAATTCAAAATTTTGGGAAATTCGAACATTCAGAAATTTTGGGGACCCGGAAATTGGGAATTTCTGAAATTAGAACTTAAAGTGTCAGATATTATACAATAAGCAGAAACCAGAAGGTTGATCTCCCGACTGGTTTCAAATTAATTTCAGATTGTGAAAAATAGATTTACTCACTATTGTCGTTGTTCATTGTCAGAGTTAGTTTATTAATGTAACCAGCACATTTGG</canonical_amplicon>
		<polymorphic_amplicon>AAATTTCAAAATTCAGTGATCCAGAATTCAAAATTTTGGGAAATTCGAACATTCAGAAATTTTGGGGACCCGGAAATTGGGAATTTCTGAAATTAGAACTTAAAGTGTCAGATATTATACAATAAGCAGAAACCAGAAGGTTGATCTCCCGACTGGTTTCAAATTAATTTCAGRTTGTGAAAAATAGATTTACTCACTATTGTCGTTGTTCATTGTCAGAGTTAGTTTATTAATGTAACCAGCACATTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14905</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>19866</contig_pos>
        <strand>+</strand>
        <context>CGGTCTACTC[C/T]CTTTCATCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGTGTGTGTTGAGGATAGATAAAGCCTTTTTTAAGGTGTCGGTCTACTC</left_flank>
        <right_flank>CTTTCATCTACTTTTTTCACACCTTTGTTCTTCCGAAATTCAACGGAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTGAGCCAATTCTGTCAAAAATATAAAAAAGCTGTCAAATTATCCATTGTTTATCATAATTAACACATGTTTCATATCTAGCATAGGAATTGCGATAATTGAGCTCAAATTTGACTTGACAGATGACAGTGTAAGGGCAGTTCTATTACAGGTTTTACGGTGAACAACTTTTGAATTCCCCTATTCTCCTTTCTATTACAATTTATTTTAAACCCTCACTTCCGATATCCGTTTCAAATCTATCTTCTTTTCTTTTCTGTATCATTAAACATAACAAATGACCCCTTTTCTCGCCTTTTCCTGTAAAATGATCGTTCAACTAACAGTTTTTTTTCTTTTTTTCCCTTTTCTTCTTTTCCATATATAACTACTCCAAACACCCCGACTTCTTTTCTAAAGGTGTCTAATAAATCATCGTCATCGGCGTCCTTGAATCGCTGAGTGATTTGTGTGTGTTGAGGATAGATAAAGCCTTTTTTAAGGTGTCGGTCTACTCTCTTTCATCTACTTTTTTCACACCTTTGTTCTTCCGAAATTCAACGGAAAAGGATTTTTAAAGAATTGGGGAGAAAAGATTACCTGGAAGTGAAGAATAATTTGCCAAATAAGGCCGAGTACGATTCTTGGATTTCCATCGGCAATATCAGCAGCATTGTTGTTTATCAGTTCCAGACCACGCCGACGCAGCACTGTCAACGCAGTGGTCAGATTAGCAATGTGATGAACTCGTTTTGATACTCGTCCTTTATGAACCGCCTGAATTTAGAATCGAAAATTGGGTTTTGTCATCTTTGTGATTAATTATCTCTGGATTCGATTTTTGTGTGGAACAAGCTATCAATGTTGCGATGTAAGATGAAAAGACTGACGAAAACTTCAGAAGTCCTCTGTGAGATTTCTCGAGAATTTTCGTACAAAAAATGTTATTAAAAACTGATGCCTCAACGATATGAACAAATCCTATTGTTAAAAAATCAAATCTGGTTTTCCATTCTCC</canonical>
            <polymorphic>ATTTTGAGCCAATTCTGTCAAAAATATAAAAAAGCTGTCAAATTATCCATTGTTTATCATAATTAACACATGTTTCATATCTAGCATAGGAATTGCGATAATTGAGCTCAAATTTGACTTGACAGATGACAGTGTAAGGGCAGTTCTATTACAGGTTTTACGGTGAACAACTTTTGAATTCCCCTATTCTCCTTTCTATTACAATTTATTTTAAACCCTCACTTCCGATATCCGTTTCAAATCTATCTTCTTTTCTTTTCTGTATCATTAAACATAACAAATGACCCCTTTTCTCGCCTTTTCCTGTAAAATGATCGTTCAACTAACAGTTTTTTTTCTTTTTTTCCCTTTTCTTCTTTTCCATATATAACTACTCCAAACACCCCGACTTCTTTTCTAAAGGTGTCTAATAAATCATCGTCATCGGCGTCCTTGAATCGCTGAGTGATTTGTGTGTGTTGAGGATAGATAAAGCCTTTTTTAAGGTGTCGGTCTACTCYCTTTCATCTACTTTTTTCACACCTTTGTTCTTCCGAAATTCAACGGAAAAGGATTTTTAAAGAATTGGGGAGAAAAGATTACCTGGAAGTGAAGAATAATTTGCCAAATAAGGCCGAGTACGATTCTTGGATTTCCATCGGCAATATCAGCAGCATTGTTGTTTATCAGTTCCAGACCACGCCGACGCAGCACTGTCAACGCAGTGGTCAGATTAGCAATGTGATGAACTCGTTTTGATACTCGTCCTTTATGAACCGCCTGAATTTAGAATCGAAAATTGGGTTTTGTCATCTTTGTGATTAATTATCTCTGGATTCGATTTTTGTGTGGAACAAGCTATCAATGTTGCGATGTAAGATGAAAAGACTGACGAAAACTTCAGAAGTCCTCTGTGAGATTTCTCGAGAATTTTCGTACAAAAAATGTTATTAAAAACTGATGCCTCAACGATATGAACAAATCCTATTGTTAAAAAATCAAATCTGGTTTTCCATTCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCCTTTTCTTCTTTTCCATA</pcr_primer_p1>
		<pcr_primer_p2>CTTCACTTCCAGGTAATCTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCCTTTTCTTCTTTTCCATATATAACTACTCCAAACACCCCGACTTCTTTTCTAAAGGTGTCTAATAAATCATCGTCATCGGCGTCCTTGAATCGCTGAGTGATTTGTGTGTGTTGAGGATAGATAAAGCCTTTTTTAAGGTGTCGGTCTACTCTCTTTCATCTACTTTTTTCACACCTTTGTTCTTCCGAAATTCAACGGAAAAGGATTTTTAAAGAATTGGGGAGAAAAGATTACCTGGAAGTGAAG</canonical_amplicon>
		<polymorphic_amplicon>TCCCTTTTCTTCTTTTCCATATATAACTACTCCAAACACCCCGACTTCTTTTCTAAAGGTGTCTAATAAATCATCGTCATCGGCGTCCTTGAATCGCTGAGTGATTTGTGTGTGTTGAGGATAGATAAAGCCTTTTTTAAGGTGTCGGTCTACTCYCTTTCATCTACTTTTTTCACACCTTTGTTCTTCCGAAATTCAACGGAAAAGGATTTTTAAAGAATTGGGGAGAAAAGATTACCTGGAAGTGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14906</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>19831</contig_pos>
        <strand>+</strand>
        <context>TGTGTTGAGG[A/G]TAGATAAAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATCGTCATCGGCGTCCTTGAATCGCTGAGTGATTTGTGTGTGTTGAGG</left_flank>
        <right_flank>TAGATAAAGCCTTTTTTAAGGTGTCGGTCTACTCTCTTTCATCTACTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCATAAACCTGTATTAGAAGGTCCCCCTAACTTGATTTTGAGCCAATTCTGTCAAAAATATAAAAAAGCTGTCAAATTATCCATTGTTTATCATAATTAACACATGTTTCATATCTAGCATAGGAATTGCGATAATTGAGCTCAAATTTGACTTGACAGATGACAGTGTAAGGGCAGTTCTATTACAGGTTTTACGGTGAACAACTTTTGAATTCCCCTATTCTCCTTTCTATTACAATTTATTTTAAACCCTCACTTCCGATATCCGTTTCAAATCTATCTTCTTTTCTTTTCTGTATCATTAAACATAACAAATGACCCCTTTTCTCGCCTTTTCCTGTAAAATGATCGTTCAACTAACAGTTTTTTTTCTTTTTTTCCCTTTTCTTCTTTTCCATATATAACTACTCCAAACACCCCGACTTCTTTTCTAAAGGTGTCTAATAAATCATCGTCATCGGCGTCCTTGAATCGCTGAGTGATTTGTGTGTGTTGAGGATAGATAAAGCCTTTTTTAAGGTGTCGGTCTACTCTCTTTCATCTACTTTTTTCACACCTTTGTTCTTCCGAAATTCAACGGAAAAGGATTTTTAAAGAATTGGGGAGAAAAGATTACCTGGAAGTGAAGAATAATTTGCCAAATAAGGCCGAGTACGATTCTTGGATTTCCATCGGCAATATCAGCAGCATTGTTGTTTATCAGTTCCAGACCACGCCGACGCAGCACTGTCAACGCAGTGGTCAGATTAGCAATGTGATGAACTCGTTTTGATACTCGTCCTTTATGAACCGCCTGAATTTAGAATCGAAAATTGGGTTTTGTCATCTTTGTGATTAATTATCTCTGGATTCGATTTTTGTGTGGAACAAGCTATCAATGTTGCGATGTAAGATGAAAAGACTGACGAAAACTTCAGAAGTCCTCTGTGAGATTTCTCGAGAATTTTCGTACAAAAAATGTTATTAAAAACTGATGCCTCAACGATATGAACAAATCCT</canonical>
            <polymorphic>ACCATAAACCTGTATTAGAAGGTCCCCCTAACTTGATTTTGAGCCAATTCTGTCAAAAATATAAAAAAGCTGTCAAATTATCCATTGTTTATCATAATTAACACATGTTTCATATCTAGCATAGGAATTGCGATAATTGAGCTCAAATTTGACTTGACAGATGACAGTGTAAGGGCAGTTCTATTACAGGTTTTACGGTGAACAACTTTTGAATTCCCCTATTCTCCTTTCTATTACAATTTATTTTAAACCCTCACTTCCGATATCCGTTTCAAATCTATCTTCTTTTCTTTTCTGTATCATTAAACATAACAAATGACCCCTTTTCTCGCCTTTTCCTGTAAAATGATCGTTCAACTAACAGTTTTTTTTCTTTTTTTCCCTTTTCTTCTTTTCCATATATAACTACTCCAAACACCCCGACTTCTTTTCTAAAGGTGTCTAATAAATCATCGTCATCGGCGTCCTTGAATCGCTGAGTGATTTGTGTGTGTTGAGGRTAGATAAAGCCTTTTTTAAGGTGTCGGTCTACTCTCTTTCATCTACTTTTTTCACACCTTTGTTCTTCCGAAATTCAACGGAAAAGGATTTTTAAAGAATTGGGGAGAAAAGATTACCTGGAAGTGAAGAATAATTTGCCAAATAAGGCCGAGTACGATTCTTGGATTTCCATCGGCAATATCAGCAGCATTGTTGTTTATCAGTTCCAGACCACGCCGACGCAGCACTGTCAACGCAGTGGTCAGATTAGCAATGTGATGAACTCGTTTTGATACTCGTCCTTTATGAACCGCCTGAATTTAGAATCGAAAATTGGGTTTTGTCATCTTTGTGATTAATTATCTCTGGATTCGATTTTTGTGTGGAACAAGCTATCAATGTTGCGATGTAAGATGAAAAGACTGACGAAAACTTCAGAAGTCCTCTGTGAGATTTCTCGAGAATTTTCGTACAAAAAATGTTATTAAAAACTGATGCCTCAACGATATGAACAAATCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCCTTTTCTTCTTTTCCATA</pcr_primer_p1>
		<pcr_primer_p2>CTTCACTTCCAGGTAATCTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCCTTTTCTTCTTTTCCATATATAACTACTCCAAACACCCCGACTTCTTTTCTAAAGGTGTCTAATAAATCATCGTCATCGGCGTCCTTGAATCGCTGAGTGATTTGTGTGTGTTGAGGATAGATAAAGCCTTTTTTAAGGTGTCGGTCTACTCTCTTTCATCTACTTTTTTCACACCTTTGTTCTTCCGAAATTCAACGGAAAAGGATTTTTAAAGAATTGGGGAGAAAAGATTACCTGGAAGTGAAG</canonical_amplicon>
		<polymorphic_amplicon>TCCCTTTTCTTCTTTTCCATATATAACTACTCCAAACACCCCGACTTCTTTTCTAAAGGTGTCTAATAAATCATCGTCATCGGCGTCCTTGAATCGCTGAGTGATTTGTGTGTGTTGAGGRTAGATAAAGCCTTTTTTAAGGTGTCGGTCTACTCTCTTTCATCTACTTTTTTCACACCTTTGTTCTTCCGAAATTCAACGGAAAAGGATTTTTAAAGAATTGGGGAGAAAAGATTACCTGGAAGTGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14907</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>27557</contig_pos>
        <strand>+</strand>
        <context>AAAAGTTTTT[A/G]AACTATTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGTGAGAGTTTAAAGAAATGAGAAGATATTATGAACTAAAAAGTTTTT</left_flank>
        <right_flank>AACTATTTCTCTGCTTTTTGCCAAATCTCTGTTATTTATCCGAATTCAGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCGCCATTGCTAAGAACATCTGGCACTATCAAAACTAAGTTTTCGAGAAAAAATATTATGTAATGATTTACAGTTTACAGTTGAATTTCCAACAAGGACCACTCAAATCATAAATTTTTCAAAACGGAATTTCAAGAAAGGTAGGCAACACCCACTCGCCTCTTGGAACACATTATCCGATTTCTACATCTTCGAAACATGTGGAAATCTGGCAAAAAGTGTGTTAACCTCGAACAAGACACACTCCAACTGCGTCACTTTTTTCCGTTTGCACCTGATCGTCTCTGCTAACAAATTGATAACAGAATGGGAAGTCGAGGGAGACCCATTGATAAGGAATGACCGCCCGATCGGACGAACGGGAAGAAAAAAAGAAAATGAACGGATGGCTGAGAAGAGGCCGAAATAGGTTGAGAAGTGATAAAAGTTTGGAAAGTTCATTGATGAGAAAGTGAGAGTTTAAAGAAATGAGAAGATATTATGAACTAAAAAGTTTTTGAACTATTTCTCTGCTTTTTGCCAAATCTCTGTTATTTATCCGAATTCAGGTTTTCGTTTTTCTCTTAACTTTCAGTAACTTTTTTTTACTATCAAAGAATAGAAAAATCGATGAAAACTAGTGAAAAACGAGAAAATTAATCCGGAAAATGAAAAGACTTTTAGGATACGGTAGTTGTCCTTGTGGGACCTTCGGCCACGGTCATCGGCCTTCATAAAACAAGGCAGCCCAAAAAATGAAACCTCCAAAACTGTTGAGCTGGACGGTCGAAAATGAATGACACTAGGAATAATGATTAGAATGAATGAGAATGAGATGGAGAGAGTGAGAGAGTGAGAGACATAGAACATCCAAAACGGATACTGTAGTTGGCATTTTAAGAGGGGAACAAATAAAAAAAGAATGGGTGAATGACAGGTGGGGTAATGTCTGTACAGAAAGGTTGTACTTTTTTGAGCAGAAAAAAGGGGTAGACAGAATGAGAGAATTAGAGAAAACTG</canonical>
            <polymorphic>GCCGCCATTGCTAAGAACATCTGGCACTATCAAAACTAAGTTTTCGAGAAAAAATATTATGTAATGATTTACAGTTTACAGTTGAATTTCCAACAAGGACCACTCAAATCATAAATTTTTCAAAACGGAATTTCAAGAAAGGTAGGCAACACCCACTCGCCTCTTGGAACACATTATCCGATTTCTACATCTTCGAAACATGTGGAAATCTGGCAAAAAGTGTGTTAACCTCGAACAAGACACACTCCAACTGCGTCACTTTTTTCCGTTTGCACCTGATCGTCTCTGCTAACAAATTGATAACAGAATGGGAAGTCGAGGGAGACCCATTGATAAGGAATGACCGCCCGATCGGACGAACGGGAAGAAAAAAAGAAAATGAACGGATGGCTGAGAAGAGGCCGAAATAGGTTGAGAAGTGATAAAAGTTTGGAAAGTTCATTGATGAGAAAGTGAGAGTTTAAAGAAATGAGAAGATATTATGAACTAAAAAGTTTTTRAACTATTTCTCTGCTTTTTGCCAAATCTCTGTTATTTATCCGAATTCAGGTTTTCGTTTTTCTCTTAACTTTCAGTAACTTTTTTTTACTATCAAAGAATAGAAAAATCGATGAAAACTAGTGAAAAACGAGAAAATTAATCCGGAAAATGAAAAGACTTTTAGGATACGGTAGTTGTCCTTGTGGGACCTTCGGCCACGGTCATCGGCCTTCATAAAACAAGGCAGCCCAAAAAATGAAACCTCCAAAACTGTTGAGCTGGACGGTCGAAAATGAATGACACTAGGAATAATGATTAGAATGAATGAGAATGAGATGGAGAGAGTGAGAGAGTGAGAGACATAGAACATCCAAAACGGATACTGTAGTTGGCATTTTAAGAGGGGAACAAATAAAAAAAGAATGGGTGAATGACAGGTGGGGTAATGTCTGTACAGAAAGGTTGTACTTTTTTGAGCAGAAAAAAGGGGTAGACAGAATGAGAGAATTAGAGAAAACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGAAAGTGAGAGTTTAAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>AGTTTTGGAGGTTTCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>TGAGAAAGTGAGAGTTTAAAGAAATGAGAAGATATTATGAACTAAAAAGTTTTTGAACTATTTCTCTGCTTTTTGCCAAATCTCTGTTATTTATCCGAATTCAGGTTTTCGTTTTTCTCTTAACTTTCAGTAACTTTTTTTTACTATCAAAGAATAGAAAAATCGATGAAAACTAGTGAAAAACGAGAAAATTAATCCGGAAAATGAAAAGACTTTTAGGATACGGTAGTTGTCCTTGTGGGACCTTCGGCCACGGTCATCGGCCTTCATAAAACAAGGCAGCCCAAAAAATGAAACCTCCAAAACT</canonical_amplicon>
		<polymorphic_amplicon>TGAGAAAGTGAGAGTTTAAAGAAATGAGAAGATATTATGAACTAAAAAGTTTTTRAACTATTTCTCTGCTTTTTGCCAAATCTCTGTTATTTATCCGAATTCAGGTTTTCGTTTTTCTCTTAACTTTCAGTAACTTTTTTTTACTATCAAAGAATAGAAAAATCGATGAAAACTAGTGAAAAACGAGAAAATTAATCCGGAAAATGAAAAGACTTTTAGGATACGGTAGTTGTCCTTGTGGGACCTTCGGCCACGGTCATCGGCCTTCATAAAACAAGGCAGCCCAAAAAATGAAACCTCCAAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14908</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>29218</contig_pos>
        <strand>+</strand>
        <context>AAAATATGAT[G/T]TTTTGGTTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATGGAAGAGTAGAATGGAAAAGTATTTCAATCTGAAGAAAAAATATGAT</left_flank>
        <right_flank>TTTTGGTTGTTGTGAGCTGAAAATGAAAAGACAAAAATATATAGAGAAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTTGACCATTCTTCTTGCTCAACCTGCGAATGGGCACTTCATTTTATAAGCTTTGTGCTGGTCTAGGCAATGCCCATATTTGCCTCCAATACCTGAGAATAATCGAATGGGACATTTTGGGTTCTTCCCTTGTGAATATTACGATTCGTTTAGTGTCTTGGAGAAGCCAGTTTTCACAAAACTTCGAGGATCTATTTTCAGAATAAAATACGAAACACACAAGGCAAAAAACAGAAAAACAAAATAATTCTGAAGAACTGAACGACCGGGTAAAAGCTCATCGAGCTTTAGACGATGTGCAGAAATGAGAGATAAAGAGACGCAGTCGGAGAAATGTTGCCATCCGAAGGCAGGCCGAATGAGGAGGAAGAGGGAACAAGCAGTCAACGAACCATCATGATTCATTTTTAATTAGTAGAGAACCCCGAACACAAAGAATGAAAAAGAATGGAAGAGTAGAATGGAAAAGTATTTCAATCTGAAGAAAAAATATGATGTTTTGGTTGTTGTGAGCTGAAAATGAAAAGACAAAAATATATAGAGAAAGTTAATTTGTCTTGAAGTTACTGACAATATCGAGATTGGAAAACATTGGTTCTGGGTGTCTTTTAATTTACGACTCAGATTGAAAATACTCAGAAAAACATTCAATTTAGCTCGGAATTTCAGACTGATGTTCACTTTTGAAACCATTAAATGTCCTCCGGTTTCGAAAGTTCAAAACACAAAAAAACTAGGTCAAACTGTCTGTTTCCCTTTCTCATTCAACAATCTCTTTTGTCGGAAAATTCTGACCAAACAAAGTGCCATTCATGGTCTTATTTCAAATTAGATTAGGAGTTAGGACTTTTTGTATTGTCGTTTTATATGGCATGTAATGTTTCATCCATATCTGAACCACAAGCTCGAACTATTGAGCTATGCTTTTGAGCTTTAATGAGAAAGTAACGAAGTTTTAGGCCCTCGGAAAATTGATTTTGAGGTGGAAAATCAACTT</canonical>
            <polymorphic>AAGTTTGACCATTCTTCTTGCTCAACCTGCGAATGGGCACTTCATTTTATAAGCTTTGTGCTGGTCTAGGCAATGCCCATATTTGCCTCCAATACCTGAGAATAATCGAATGGGACATTTTGGGTTCTTCCCTTGTGAATATTACGATTCGTTTAGTGTCTTGGAGAAGCCAGTTTTCACAAAACTTCGAGGATCTATTTTCAGAATAAAATACGAAACACACAAGGCAAAAAACAGAAAAACAAAATAATTCTGAAGAACTGAACGACCGGGTAAAAGCTCATCGAGCTTTAGACGATGTGCAGAAATGAGAGATAAAGAGACGCAGTCGGAGAAATGTTGCCATCCGAAGGCAGGCCGAATGAGGAGGAAGAGGGAACAAGCAGTCAACGAACCATCATGATTCATTTTTAATTAGTAGAGAACCCCGAACACAAAGAATGAAAAAGAATGGAAGAGTAGAATGGAAAAGTATTTCAATCTGAAGAAAAAATATGATKTTTTGGTTGTTGTGAGCTGAAAATGAAAAGACAAAAATATATAGAGAAAGTTAATTTGTCTTGAAGTTACTGACAATATCGAGATTGGAAAACATTGGTTCTGGGTGTCTTTTAATTTACGACTCAGATTGAAAATACTCAGAAAAACATTCAATTTAGCTCGGAATTTCAGACTGATGTTCACTTTTGAAACCATTAAATGTCCTCCGGTTTCGAAAGTTCAAAACACAAAAAAACTAGGTCAAACTGTCTGTTTCCCTTTCTCATTCAACAATCTCTTTTGTCGGAAAATTCTGACCAAACAAAGTGCCATTCATGGTCTTATTTCAAATTAGATTAGGAGTTAGGACTTTTTGTATTGTCGTTTTATATGGCATGTAATGTTTCATCCATATCTGAACCACAAGCTCGAACTATTGAGCTATGCTTTTGAGCTTTAATGAGAAAGTAACGAAGTTTTAGGCCCTCGGAAAATTGATTTTGAGGTGGAAAATCAACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAAAGAATGGAAGAGTAGAA</pcr_primer_p1>
		<pcr_primer_p2>GTTTCAAAAGTGAACATCAGTCT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TGAAAAAGAATGGAAGAGTAGAATGGAAAAGTATTTCAATCTGAAGAAAAAATATGATGTTTTGGTTGTTGTGAGCTGAAAATGAAAAGACAAAAATATATAGAGAAAGTTAATTTGTCTTGAAGTTACTGACAATATCGAGATTGGAAAACATTGGTTCTGGGTGTCTTTTAATTTACGACTCAGATTGAAAATACTCAGAAAAACATTCAATTTAGCTCGGAATTTCAGACTGATGTTCACTTTTGAAAC</canonical_amplicon>
		<polymorphic_amplicon>TGAAAAAGAATGGAAGAGTAGAATGGAAAAGTATTTCAATCTGAAGAAAAAATATGATKTTTTGGTTGTTGTGAGCTGAAAATGAAAAGACAAAAATATATAGAGAAAGTTAATTTGTCTTGAAGTTACTGACAATATCGAGATTGGAAAACATTGGTTCTGGGTGTCTTTTAATTTACGACTCAGATTGAAAATACTCAGAAAAACATTCAATTTAGCTCGGAATTTCAGACTGATGTTCACTTTTGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14909</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>29095</contig_pos>
        <strand>+</strand>
        <context>GAGGAAGAGG[A/G]AACAAGCAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTCGGAGAAATGTTGCCATCCGAAGGCAGGCCGAATGAGGAGGAAGAGG</left_flank>
        <right_flank>AACAAGCAGTCAACGAACCATCATGATTCATTTTTAATTAGTAGAGAACC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCGAAAATCGTCATTTTTGGATTTCGCACAATCAGATTACTCATACATAATTTTCCAGCCTAGTAAATCTCTTTGTAAATCATTTTCTTTTTTCTCTTTTTTTCAAAAAAAATCTTCAAAAGTTTGACCATTCTTCTTGCTCAACCTGCGAATGGGCACTTCATTTTATAAGCTTTGTGCTGGTCTAGGCAATGCCCATATTTGCCTCCAATACCTGAGAATAATCGAATGGGACATTTTGGGTTCTTCCCTTGTGAATATTACGATTCGTTTAGTGTCTTGGAGAAGCCAGTTTTCACAAAACTTCGAGGATCTATTTTCAGAATAAAATACGAAACACACAAGGCAAAAAACAGAAAAACAAAATAATTCTGAAGAACTGAACGACCGGGTAAAAGCTCATCGAGCTTTAGACGATGTGCAGAAATGAGAGATAAAGAGACGCAGTCGGAGAAATGTTGCCATCCGAAGGCAGGCCGAATGAGGAGGAAGAGGGAACAAGCAGTCAACGAACCATCATGATTCATTTTTAATTAGTAGAGAACCCCGAACACAAAGAATGAAAAAGAATGGAAGAGTAGAATGGAAAAGTATTTCAATCTGAAGAAAAAATATGATGTTTTGGTTGTTGTGAGCTGAAAATGAAAAGACAAAAATATATAGAGAAAGTTAATTTGTCTTGAAGTTACTGACAATATCGAGATTGGAAAACATTGGTTCTGGGTGTCTTTTAATTTACGACTCAGATTGAAAATACTCAGAAAAACATTCAATTTAGCTCGGAATTTCAGACTGATGTTCACTTTTGAAACCATTAAATGTCCTCCGGTTTCGAAAGTTCAAAACACAAAAAAACTAGGTCAAACTGTCTGTTTCCCTTTCTCATTCAACAATCTCTTTTGTCGGAAAATTCTGACCAAACAAAGTGCCATTCATGGTCTTATTTCAAATTAGATTAGGAGTTAGGACTTTTTGTATTGTCGTTTTATATGGCAT</canonical>
            <polymorphic>TTTTTCGAAAATCGTCATTTTTGGATTTCGCACAATCAGATTACTCATACATAATTTTCCAGCCTAGTAAATCTCTTTGTAAATCATTTTCTTTTTTCTCTTTTTTTCAAAAAAAATCTTCAAAAGTTTGACCATTCTTCTTGCTCAACCTGCGAATGGGCACTTCATTTTATAAGCTTTGTGCTGGTCTAGGCAATGCCCATATTTGCCTCCAATACCTGAGAATAATCGAATGGGACATTTTGGGTTCTTCCCTTGTGAATATTACGATTCGTTTAGTGTCTTGGAGAAGCCAGTTTTCACAAAACTTCGAGGATCTATTTTCAGAATAAAATACGAAACACACAAGGCAAAAAACAGAAAAACAAAATAATTCTGAAGAACTGAACGACCGGGTAAAAGCTCATCGAGCTTTAGACGATGTGCAGAAATGAGAGATAAAGAGACGCAGTCGGAGAAATGTTGCCATCCGAAGGCAGGCCGAATGAGGAGGAAGAGGRAACAAGCAGTCAACGAACCATCATGATTCATTTTTAATTAGTAGAGAACCCCGAACACAAAGAATGAAAAAGAATGGAAGAGTAGAATGGAAAAGTATTTCAATCTGAAGAAAAAATATGATGTTTTGGTTGTTGTGAGCTGAAAATGAAAAGACAAAAATATATAGAGAAAGTTAATTTGTCTTGAAGTTACTGACAATATCGAGATTGGAAAACATTGGTTCTGGGTGTCTTTTAATTTACGACTCAGATTGAAAATACTCAGAAAAACATTCAATTTAGCTCGGAATTTCAGACTGATGTTCACTTTTGAAACCATTAAATGTCCTCCGGTTTCGAAAGTTCAAAACACAAAAAAACTAGGTCAAACTGTCTGTTTCCCTTTCTCATTCAACAATCTCTTTTGTCGGAAAATTCTGACCAAACAAAGTGCCATTCATGGTCTTATTTCAAATTAGATTAGGAGTTAGGACTTTTTGTATTGTCGTTTTATATGGCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTTCGAGGATCTATTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>TCGGGGTTCTCTACTAATTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACTTCGAGGATCTATTTTCAGAATAAAATACGAAACACACAAGGCAAAAAACAGAAAAACAAAATAATTCTGAAGAACTGAACGACCGGGTAAAAGCTCATCGAGCTTTAGACGATGTGCAGAAATGAGAGATAAAGAGACGCAGTCGGAGAAATGTTGCCATCCGAAGGCAGGCCGAATGAGGAGGAAGAGGGAACAAGCAGTCAACGAACCATCATGATTCATTTTTAATTAGTAGAGAACCCCGA</canonical_amplicon>
		<polymorphic_amplicon>AAACTTCGAGGATCTATTTTCAGAATAAAATACGAAACACACAAGGCAAAAAACAGAAAAACAAAATAATTCTGAAGAACTGAACGACCGGGTAAAAGCTCATCGAGCTTTAGACGATGTGCAGAAATGAGAGATAAAGAGACGCAGTCGGAGAAATGTTGCCATCCGAAGGCAGGCCGAATGAGGAGGAAGAGGRAACAAGCAGTCAACGAACCATCATGATTCATTTTTAATTAGTAGAGAACCCCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14910</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>121396</contig_pos>
        <strand>+</strand>
        <context>AATGAGTGTC[A/G]GCAAACGCGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAGCAAATTCGTCCGCCGAACTCAAGAGTTCTTTACATGAATGAGTGTC</left_flank>
        <right_flank>GCAAACGCGCGTATTCCGAGACAATTCGACGGATCCAACTGCTTTTTCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAGGTTTTGTGCGGGGACCTTGCATATTAGGCCGTTCGACCGGTAGTAGGAGATAGTTTTTGGCTTCATCAACTAAATCTCGGCTAGCTGGATCTGACTTGACCAGAATTTCCTCGCTGACAACGCTAACCAGGAACTTGGGAGTGCAGAGTGGTAGTCGGACATGAGAAAGAAGCTATAACAGATTTAATAAAATAAAATAAGCTCATTTTCATATACTTACCATGGACAGATGTGCTTTCCTTGCAGAAATATCATGCCTAATCCATTTGATCAATGCAGAAAAAACGAGCTCCTCGGACGCCGCATTCAGCCTGTCACTTTTGATGATTGTTGTTAGACTTTCCACTGATAGAAGAAGGAATTCTTCTTTGCCAATGACGCTCTGTGTAATTGAATAAATAGTACAGTTATTACGGAAAGTATTTTCTTACTGAAAAATTTTTAAGAGCAAATTCGTCCGCCGAACTCAAGAGTTCTTTACATGAATGAGTGTCAGCAAACGCGCGTATTCCGAGACAATTCGACGGATCCAACTGCTTTTTCAGGTATTCACAACAAGCAGTTTGTACTTCATGTAGTTGCAAAAGACATGCTGCAGGCAGAATGTCTTGCACGTTAGAATCATCTATCTGAATTACTCCAGAATAGCAGAAATCTAGCAGTACTTCGAGAGTAGTAGCCTCCATGTTTTCGATGCTGATCTCTTCTAAATTACTATAGAACTTGGACGAAAACTCTTGGAAGCAAACTGACTCGAGTAGCATTCTGACATTTTTGATGTAAACATCGACATAAAATACGGAGAACACGCCGAGAGAACAACACGATGAGCATTCAACCGCTTCCAGTCGCAGATCTGAAATTAGAAGTTGTTATAGTTCAATGCCAGAAAATCTGTCGAACCAATGTCACATCACAGAGAATGTCTTGATTTCTCAGATTCCCTAGCTGTTGTAGAATAGAATAACCAAAGTGAACATTCTTATATTTATTCT</canonical>
            <polymorphic>TCTAGGTTTTGTGCGGGGACCTTGCATATTAGGCCGTTCGACCGGTAGTAGGAGATAGTTTTTGGCTTCATCAACTAAATCTCGGCTAGCTGGATCTGACTTGACCAGAATTTCCTCGCTGACAACGCTAACCAGGAACTTGGGAGTGCAGAGTGGTAGTCGGACATGAGAAAGAAGCTATAACAGATTTAATAAAATAAAATAAGCTCATTTTCATATACTTACCATGGACAGATGTGCTTTCCTTGCAGAAATATCATGCCTAATCCATTTGATCAATGCAGAAAAAACGAGCTCCTCGGACGCCGCATTCAGCCTGTCACTTTTGATGATTGTTGTTAGACTTTCCACTGATAGAAGAAGGAATTCTTCTTTGCCAATGACGCTCTGTGTAATTGAATAAATAGTACAGTTATTACGGAAAGTATTTTCTTACTGAAAAATTTTTAAGAGCAAATTCGTCCGCCGAACTCAAGAGTTCTTTACATGAATGAGTGTCRGCAAACGCGCGTATTCCGAGACAATTCGACGGATCCAACTGCTTTTTCAGGTATTCACAACAAGCAGTTTGTACTTCATGTAGTTGCAAAAGACATGCTGCAGGCAGAATGTCTTGCACGTTAGAATCATCTATCTGAATTACTCCAGAATAGCAGAAATCTAGCAGTACTTCGAGAGTAGTAGCCTCCATGTTTTCGATGCTGATCTCTTCTAAATTACTATAGAACTTGGACGAAAACTCTTGGAAGCAAACTGACTCGAGTAGCATTCTGACATTTTTGATGTAAACATCGACATAAAATACGGAGAACACGCCGAGAGAACAACACGATGAGCATTCAACCGCTTCCAGTCGCAGATCTGAAATTAGAAGTTGTTATAGTTCAATGCCAGAAAATCTGTCGAACCAATGTCACATCACAGAGAATGTCTTGATTTCTCAGATTCCCTAGCTGTTGTAGAATAGAATAACCAAAGTGAACATTCTTATATTTATTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATTGTTGTTAGACTTTCCAC</pcr_primer_p1>
		<pcr_primer_p2>AGTACAAACTGCTTGTTGTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATGATTGTTGTTAGACTTTCCACTGATAGAAGAAGGAATTCTTCTTTGCCAATGACGCTCTGTGTAATTGAATAAATAGTACAGTTATTACGGAAAGTATTTTCTTACTGAAAAATTTTTAAGAGCAAATTCGTCCGCCGAACTCAAGAGTTCTTTACATGAATGAGTGTCAGCAAACGCGCGTATTCCGAGACAATTCGACGGATCCAACTGCTTTTTCAGGTATTCACAACAAGCAGTTTGTACT</canonical_amplicon>
		<polymorphic_amplicon>ATGATTGTTGTTAGACTTTCCACTGATAGAAGAAGGAATTCTTCTTTGCCAATGACGCTCTGTGTAATTGAATAAATAGTACAGTTATTACGGAAAGTATTTTCTTACTGAAAAATTTTTAAGAGCAAATTCGTCCGCCGAACTCAAGAGTTCTTTACATGAATGAGTGTCRGCAAACGCGCGTATTCCGAGACAATTCGACGGATCCAACTGCTTTTTCAGGTATTCACAACAAGCAGTTTGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14941</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>165870</contig_pos>
        <strand>+</strand>
        <context>AGAAGCAATT[A/T]AAAAAAATAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGCATCAGATTTGCGCACGGCATCGTTATGTACTGTTTTCAGAAGCAATT</left_flank>
        <right_flank>AAAAAAATATATCAACTAATAATGGCAGTCTTCGTGTTGCGAAGGTTTCA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGATCAAGGAAAAACTTACCGTAAAACCTGTAATAGAAGGGCCCCATAACTTTAAACTTTGAGCCAATTTATCTCCATTCCCGTGAAAGAAATCAAAAAGTTGTCAACTGATAAATTGCTTATCACAATATCAGAAGTGTTATATTAGTTGACGCACTTTTGATATCTTTCACAGGAACCGAGATAAATTGGCTCGAATTTGACAGTGTGGGAGCCATTTTTCCCAGGTTTCAGCTACGTATTGTTTCCGACGAAAATTGTTTTTGTTGTATTTTATAAAAACACACTCAATCTATTCCGTGGTTAGTTTGTCCAATTAAATCAGATAACTAATAGAAACACCCACGAGACGGAATTCGTTTGTTGACTGTTAAATGACGTTGTGTAGTTTTTAAAAGAGGCGGCCAAACAACGGAATGTAACTCACCTGAACTCCTGCTTACACCGTGGCATCAGATTTGCGCACGGCATCGTTATGTACTGTTTTCAGAAGCAATTTAAAAAAATATATCAACTAATAATGGCAGTCTTCGTGTTGCGAAGGTTTCAGATGGTCGGTAGAAGAACAGTAGCGAACAAAAAAAACCGTGCCACTGTTGATGACGATGACAATATGAGAGAGGGGGATTCAGACGCAGACGTTGAGAAATTCTTGTTCTTTCTTTTTTGTCTGTAGGTGACAGTGGGGACGAAATGCTGCCGATTTGAGAAAAAGGCGGGGGCAACACAAGACGATAAAACCCACAATGTTCTTCTTTTTTCTCTTCCAATTTTCTTCTTTTTTCCTTTCTTCAACTTTTTTTGGAGTATGAAGAAGTAAATGAGTAGAAGAAGAAGAAGAAGAAGACGGAAGACGAAGTGCGTGGGCACACAGATTAATTCGCTCCTCTCAACTCTTGAGAATATGTCGGGGGTCCAATTCTTCTTTCCGGAGTGAAATGAGGATGATGATGCGGCAGTGGATGAGGAGGAAGAGAAATTTTAACTATCAGGCTGGAA</canonical>
            <polymorphic>TTGATCAAGGAAAAACTTACCGTAAAACCTGTAATAGAAGGGCCCCATAACTTTAAACTTTGAGCCAATTTATCTCCATTCCCGTGAAAGAAATCAAAAAGTTGTCAACTGATAAATTGCTTATCACAATATCAGAAGTGTTATATTAGTTGACGCACTTTTGATATCTTTCACAGGAACCGAGATAAATTGGCTCGAATTTGACAGTGTGGGAGCCATTTTTCCCAGGTTTCAGCTACGTATTGTTTCCGACGAAAATTGTTTTTGTTGTATTTTATAAAAACACACTCAATCTATTCCGTGGTTAGTTTGTCCAATTAAATCAGATAACTAATAGAAACACCCACGAGACGGAATTCGTTTGTTGACTGTTAAATGACGTTGTGTAGTTTTTAAAAGAGGCGGCCAAACAACGGAATGTAACTCACCTGAACTCCTGCTTACACCGTGGCATCAGATTTGCGCACGGCATCGTTATGTACTGTTTTCAGAAGCAATTWAAAAAAATATATCAACTAATAATGGCAGTCTTCGTGTTGCGAAGGTTTCAGATGGTCGGTAGAAGAACAGTAGCGAACAAAAAAAACCGTGCCACTGTTGATGACGATGACAATATGAGAGAGGGGGATTCAGACGCAGACGTTGAGAAATTCTTGTTCTTTCTTTTTTGTCTGTAGGTGACAGTGGGGACGAAATGCTGCCGATTTGAGAAAAAGGCGGGGGCAACACAAGACGATAAAACCCACAATGTTCTTCTTTTTTCTCTTCCAATTTTCTTCTTTTTTCCTTTCTTCAACTTTTTTTGGAGTATGAAGAAGTAAATGAGTAGAAGAAGAAGAAGAAGAAGACGGAAGACGAAGTGCGTGGGCACACAGATTAATTCGCTCCTCTCAACTCTTGAGAATATGTCGGGGGTCCAATTCTTCTTTCCGGAGTGAAATGAGGATGATGATGCGGCAGTGGATGAGGAGGAAGAGAAATTTTAACTATCAGGCTGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 340 106 54</canonical_bands>
                <polymorphic_bands>606 340 54</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>378 265 106 106 54 53 21 17</canonical_bands>
                <polymorphic_bands>484 265 106 54 53 21 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTTGTGTAGTTTTTAAAAGAGG</pcr_primer_p1>
		<pcr_primer_p2>CTCTCTCATATTGTCATCGTCAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CGTTGTGTAGTTTTTAAAAGAGGCGGCCAAACAACGGAATGTAACTCACCTGAACTCCTGCTTACACCGTGGCATCAGATTTGCGCACGGCATCGTTATGTACTGTTTTCAGAAGCAATTTAAAAAAATATATCAACTAATAATGGCAGTCTTCGTGTTGCGAAGGTTTCAGATGGTCGGTAGAAGAACAGTAGCGAACAAAAAAAACCGTGCCACTGTTGATGACGATGACAATATGAGAGAG</canonical_amplicon>
		<polymorphic_amplicon>CGTTGTGTAGTTTTTAAAAGAGGCGGCCAAACAACGGAATGTAACTCACCTGAACTCCTGCTTACACCGTGGCATCAGATTTGCGCACGGCATCGTTATGTACTGTTTTCAGAAGCAATTWAAAAAAATATATCAACTAATAATGGCAGTCTTCGTGTTGCGAAGGTTTCAGATGGTCGGTAGAAGAACAGTAGCGAACAAAAAAAACCGTGCCACTGTTGATGACGATGACAATATGAGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14942</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>197286</contig_pos>
        <strand>+</strand>
        <context>AATGRCGGCA[A/G]TAAACATGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCA</left_flank>
        <right_flank>TAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGCGGCTCTTGTCAAAAGAGAGTGAGTAGGATACCGCAAAAAAATAGAGAGCAAAAGTTTCGAAATATTCCTCAAATCAACGAAAGCGATAGAGGATTTAATAAAATCCCCAGAGAATTTGAAAAGCCATTAACCTGTATAGGGATTGGTTTCTTCCAGTTAAAGAGCTTTTGATATTACCGCATATTTCAAAACGTCTCCAAATAGTTTTCATGTAGTGCTCTTGCCCGCCCGCTCCATTAACATCAAAACGACACATTTAAAAATAATGTTATGTTGTGTTCTTCACCAGATGTTCGATGATAGATGTACAACAAACGTTTTTCGCCTACTTCTCTCTTAGCCGTCTCATTATTTCTCTCCTTTTTTCCGGCGAAACATTCGTTTGAAAGAGATAGAGAGAGGGATTTTGCTATGTAGAAAAATGAATCAACAGCCGCTTCTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACTTCTTCGATCAGAGGAAGAATTCGTATCATCTCTGAGAACCTGCGTTGACGATTACATCAAAGTTCTCGATGATCCTGGAGTACCAGAAGCAGTCAAAAAACATCGTGAAGAGCTCGCTCTGAATATTCCAGAGCTCTACAATTTTCACGCAAAGTAACAAGCAATCTAGAAAAGCATTCAAAAAAATTATACAATTTCAGTGTTATGCTAAAAGGCCTCAATTACTATTCTGACGATCCGGGCAAAGTCGGTCAGACATTTGTACGCCTTGAGAAAGATTTTGAGAGTCATGTGGAGTTTTACAAACAGTACGCAGATACTCTGAAACTTCTTGAAGAACCAGAAATAAAACGTTTCTTT</canonical>
            <polymorphic>AGGCGGCTCTTGTCAAAAGAGAGTGAGTAGGATACCGCAAAAAAATAGAGAGCAAAAGTTTCGAAATATTCCTCAAATCAACGAAAGCGATAGAGGATTTAATAAAATCCCCAGAGAATTTGAAAAGCCATTAACCTGTATAGGGATTGGTTTCTTCCAGTTAAAGAGCTTTTGATATTACCGCATATTTCAAAACGTCTCCAAATAGTTTTCATGTAGTGCTCTTGCCCGCCCGCTCCATTAACATCAAAACGACACATTTAAAAATAATGTTATGTTGTGTTCTTCACCAGATGTTCGATGATAGATGTACAACAAACGTTTTTCGCCTACTTCTCTCTTAGCCGTCTCATTATTTCTCTCCTTTTTTCCGGCGAAACATTCGTTTGAAAGAGATAGAGAGAGGGATTTTGCTATGTAGAAAAATGAATCAACAGCCGCTTCTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCARTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACTTCTTCGATCAGAGGAAGAATTCGTATCATCTCTGAGAACCTGCGTTGACGATTACATCAAAGTTCTCGATGATCCTGGAGTACCAGAAGCAGTCAAAAAACATCGTGAAGAGCTCGCTCTGAATATTCCAGAGCTCTACAATTTTCACGCAAAGTAACAAGCAATCTAGAAAAGCATTCAAAAAAATTATACAATTTCAGTGTTATGCTAAAAGGCCTCAATTACTATTCTGACGATCCGGGCAAAGTCGGTCAGACATTTGTACGCCTTGAGAAAGATTTTGAGAGTCATGTGGAGTTTTACAAACAGTACGCAGATACTCTGAAACTTCTTGAAGAACCAGAAATAAAACGTTTCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 314 127 57</canonical_bands>
                <polymorphic_bands>629 314 57</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAGATAGAGAGAGGGATTTTG</pcr_primer_p1>
		<pcr_primer_p2>AGTTCATGGTAGACTTGACTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAGATAGAGAGAGGGATTTTGCTATGTAGAAAAATGAATCAACAGCCGCTTCTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACT</canonical_amplicon>
		<polymorphic_amplicon>AAGAGATAGAGAGAGGGATTTTGCTATGTAGAAAAATGAATCAACAGCCGCTTCTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCARTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14943</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>295613</contig_pos>
        <strand>+</strand>
        <context>AACATAGTTG[A/T]CTCGATGTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGCACGGTACCTCCGTCCCGATTGTGTACATTTTCTTCGCAACATAGTTG</left_flank>
        <right_flank>CTCGATGTATTGTAAACGTGGCTGCCGCAACAGACGACACCAATCATTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTTCAGGAAATTATGTGAATACAACATTTTCTAGATCAGTTTTACACTCTCCGACGTTTTCAAAGTGGTCGGAAACTTGACAGCCGAGCTCTAGAGTTTTGAAAATGAAATGGTCAAAATGGCTTGAAAAATACGTTTTCGTTTATCTTATTGACCGTAATAGATGTTTGGACCCTTATCTTTCAGATCCATTCTTTTTCATTCCCTGCTCTCAAACCCTTCTTTTTCAAAAACCATGAACCCTTACCACCCCTCCACAACAAGTTTGATCAAGGCGAAGTGGTTTAGTACCGCAACATGAGTGAGCCATGACACCGCCTGAAACAATACGCTGATTATGGTCATTATTTATTTATACACATTAGTATTCGCCCTTTTTCACTGATAACTCTAACACATTTGACGGTAAAACAATGCCATCGAAGGGAAAAGAGATAAGAGAAGAAAGGCACGGTACCTCCGTCCCGATTGTGTACATTTTCTTCGCAACATAGTTGACTCGATGTATTGTAAACGTGGCTGCCGCAACAGACGACACCAATCATTTCTCTTGGTTCAGAGAACGAAGTGCAGTTCTCAGACTTCGTTCCGACTTGACAACAAACTCGGAATTCTGAATTTAAATTTGGGATAGGAGATGAATTAATCAGATTTCGGCTTGTATCTTCTGATTAGAAGTAGAGGGGTTTGGTTTGTGGATGAATATTGGTCTGGTTCTGGTCGAAACTTGCCCAAAAACGGTTGTATAGCGGACCATGGTCAGATTTTGGTCGGAAGTTGAAAACTTTATTAACCGGAATCTGAGCAACCTCCAACCAGAAGCTGTCGGCCACGCCCGAGGAAAAACGCTGACGACCGACCCTAAAAAGTTCTTACCTGTTTTGGTACTAACCACTTTCAGAGGGAAAAGTATGACAAACAGATGAAAAATTAAATTTAACATAGTATTGACAAAATATGTATGAGCTAGTATACGAACGGTCGATAAAAGGGTTGGT</canonical>
            <polymorphic>ACTTTCAGGAAATTATGTGAATACAACATTTTCTAGATCAGTTTTACACTCTCCGACGTTTTCAAAGTGGTCGGAAACTTGACAGCCGAGCTCTAGAGTTTTGAAAATGAAATGGTCAAAATGGCTTGAAAAATACGTTTTCGTTTATCTTATTGACCGTAATAGATGTTTGGACCCTTATCTTTCAGATCCATTCTTTTTCATTCCCTGCTCTCAAACCCTTCTTTTTCAAAAACCATGAACCCTTACCACCCCTCCACAACAAGTTTGATCAAGGCGAAGTGGTTTAGTACCGCAACATGAGTGAGCCATGACACCGCCTGAAACAATACGCTGATTATGGTCATTATTTATTTATACACATTAGTATTCGCCCTTTTTCACTGATAACTCTAACACATTTGACGGTAAAACAATGCCATCGAAGGGAAAAGAGATAAGAGAAGAAAGGCACGGTACCTCCGTCCCGATTGTGTACATTTTCTTCGCAACATAGTTGWCTCGATGTATTGTAAACGTGGCTGCCGCAACAGACGACACCAATCATTTCTCTTGGTTCAGAGAACGAAGTGCAGTTCTCAGACTTCGTTCCGACTTGACAACAAACTCGGAATTCTGAATTTAAATTTGGGATAGGAGATGAATTAATCAGATTTCGGCTTGTATCTTCTGATTAGAAGTAGAGGGGTTTGGTTTGTGGATGAATATTGGTCTGGTTCTGGTCGAAACTTGCCCAAAAACGGTTGTATAGCGGACCATGGTCAGATTTTGGTCGGAAGTTGAAAACTTTATTAACCGGAATCTGAGCAACCTCCAACCAGAAGCTGTCGGCCACGCCCGAGGAAAAACGCTGACGACCGACCCTAAAAAGTTCTTACCTGTTTTGGTACTAACCACTTTCAGAGGGAAAAGTATGACAAACAGATGAAAAATTAAATTTAACATAGTATTGACAAAATATGTATGAGCTAGTATACGAACGGTCGATAAAAGGGTTGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>499 300 201</canonical_bands>
                <polymorphic_bands>799 201</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>475 460 26 23 16</canonical_bands>
                <polymorphic_bands>475 460 39 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCTTTTTCACTGATAACTCTAA</pcr_primer_p1>
		<pcr_primer_p2>ATTCAGAATTCCGAGTTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCCTTTTTCACTGATAACTCTAACACATTTGACGGTAAAACAATGCCATCGAAGGGAAAAGAGATAAGAGAAGAAAGGCACGGTACCTCCGTCCCGATTGTGTACATTTTCTTCGCAACATAGTTGACTCGATGTATTGTAAACGTGGCTGCCGCAACAGACGACACCAATCATTTCTCTTGGTTCAGAGAACGAAGTGCAGTTCTCAGACTTCGTTCCGACTTGACAACAAACTCGGAATTCTGAAT</canonical_amplicon>
		<polymorphic_amplicon>CCCTTTTTCACTGATAACTCTAACACATTTGACGGTAAAACAATGCCATCGAAGGGAAAAGAGATAAGAGAAGAAAGGCACGGTACCTCCGTCCCGATTGTGTACATTTTCTTCGCAACATAGTTGWCTCGATGTATTGTAAACGTGGCTGCCGCAACAGACGACACCAATCATTTCTCTTGGTTCAGAGAACGAAGTGCAGTTCTCAGACTTCGTTCCGACTTGACAACAAACTCGGAATTCTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14944</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>295649</contig_pos>
        <strand>+</strand>
        <context>CGCAACAGAC[A/G]ACACCAATCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGCAACATAGTTGACTCGATGTATTGTAAACGTGGCTGCCGCAACAGAC</left_flank>
        <right_flank>ACACCAATCATTTCTCTTGGTTCAGAGAACGAAGTGCAGTTCTCAGACTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAGTTTTACACTCTCCGACGTTTTCAAAGTGGTCGGAAACTTGACAGCCGAGCTCTAGAGTTTTGAAAATGAAATGGTCAAAATGGCTTGAAAAATACGTTTTCGTTTATCTTATTGACCGTAATAGATGTTTGGACCCTTATCTTTCAGATCCATTCTTTTTCATTCCCTGCTCTCAAACCCTTCTTTTTCAAAAACCATGAACCCTTACCACCCCTCCACAACAAGTTTGATCAAGGCGAAGTGGTTTAGTACCGCAACATGAGTGAGCCATGACACCGCCTGAAACAATACGCTGATTATGGTCATTATTTATTTATACACATTAGTATTCGCCCTTTTTCACTGATAACTCTAACACATTTGACGGTAAAACAATGCCATCGAAGGGAAAAGAGATAAGAGAAGAAAGGCACGGTACCTCCGTCCCGATTGTGTACATTTTCTTCGCAACATAGTTGACTCGATGTATTGTAAACGTGGCTGCCGCAACAGACGACACCAATCATTTCTCTTGGTTCAGAGAACGAAGTGCAGTTCTCAGACTTCGTTCCGACTTGACAACAAACTCGGAATTCTGAATTTAAATTTGGGATAGGAGATGAATTAATCAGATTTCGGCTTGTATCTTCTGATTAGAAGTAGAGGGGTTTGGTTTGTGGATGAATATTGGTCTGGTTCTGGTCGAAACTTGCCCAAAAACGGTTGTATAGCGGACCATGGTCAGATTTTGGTCGGAAGTTGAAAACTTTATTAACCGGAATCTGAGCAACCTCCAACCAGAAGCTGTCGGCCACGCCCGAGGAAAAACGCTGACGACCGACCCTAAAAAGTTCTTACCTGTTTTGGTACTAACCACTTTCAGAGGGAAAAGTATGACAAACAGATGAAAAATTAAATTTAACATAGTATTGACAAAATATGTATGAGCTAGTATACGAACGGTCGATAAAAGGGTTGGTCATTTCATCGAATGTGCCAAAAGAGCAGCTGAGCCA</canonical>
            <polymorphic>ATCAGTTTTACACTCTCCGACGTTTTCAAAGTGGTCGGAAACTTGACAGCCGAGCTCTAGAGTTTTGAAAATGAAATGGTCAAAATGGCTTGAAAAATACGTTTTCGTTTATCTTATTGACCGTAATAGATGTTTGGACCCTTATCTTTCAGATCCATTCTTTTTCATTCCCTGCTCTCAAACCCTTCTTTTTCAAAAACCATGAACCCTTACCACCCCTCCACAACAAGTTTGATCAAGGCGAAGTGGTTTAGTACCGCAACATGAGTGAGCCATGACACCGCCTGAAACAATACGCTGATTATGGTCATTATTTATTTATACACATTAGTATTCGCCCTTTTTCACTGATAACTCTAACACATTTGACGGTAAAACAATGCCATCGAAGGGAAAAGAGATAAGAGAAGAAAGGCACGGTACCTCCGTCCCGATTGTGTACATTTTCTTCGCAACATAGTTGACTCGATGTATTGTAAACGTGGCTGCCGCAACAGACRACACCAATCATTTCTCTTGGTTCAGAGAACGAAGTGCAGTTCTCAGACTTCGTTCCGACTTGACAACAAACTCGGAATTCTGAATTTAAATTTGGGATAGGAGATGAATTAATCAGATTTCGGCTTGTATCTTCTGATTAGAAGTAGAGGGGTTTGGTTTGTGGATGAATATTGGTCTGGTTCTGGTCGAAACTTGCCCAAAAACGGTTGTATAGCGGACCATGGTCAGATTTTGGTCGGAAGTTGAAAACTTTATTAACCGGAATCTGAGCAACCTCCAACCAGAAGCTGTCGGCCACGCCCGAGGAAAAACGCTGACGACCGACCCTAAAAAGTTCTTACCTGTTTTGGTACTAACCACTTTCAGAGGGAAAAGTATGACAAACAGATGAAAAATTAAATTTAACATAGTATTGACAAAATATGTATGAGCTAGTATACGAACGGTCGATAAAAGGGTTGGTCATTTCATCGAATGTGCCAAAAGAGCAGCTGAGCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCTTTTTCACTGATAACTCTAA</pcr_primer_p1>
		<pcr_primer_p2>ATTCAGAATTCCGAGTTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCCTTTTTCACTGATAACTCTAACACATTTGACGGTAAAACAATGCCATCGAAGGGAAAAGAGATAAGAGAAGAAAGGCACGGTACCTCCGTCCCGATTGTGTACATTTTCTTCGCAACATAGTTGACTCGATGTATTGTAAACGTGGCTGCCGCAACAGACGACACCAATCATTTCTCTTGGTTCAGAGAACGAAGTGCAGTTCTCAGACTTCGTTCCGACTTGACAACAAACTCGGAATTCTGAAT</canonical_amplicon>
		<polymorphic_amplicon>CCCTTTTTCACTGATAACTCTAACACATTTGACGGTAAAACAATGCCATCGAAGGGAAAAGAGATAAGAGAAGAAAGGCACGGTACCTCCGTCCCGATTGTGTACATTTTCTTCGCAACATAGTTGACTCGATGTATTGTAAACGTGGCTGCCGCAACAGACRACACCAATCATTTCTCTTGGTTCAGAGAACGAAGTGCAGTTCTCAGACTTCGTTCCGACTTGACAACAAACTCGGAATTCTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14945</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>344945</contig_pos>
        <strand>+</strand>
        <context>TTGCAGATGA[C/T]ATGTGAGGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGCGACGTAGTGTCAAATGTATGGATTGCAAGAAGACATTTGCAGATGA</left_flank>
        <right_flank>ATGTGAGGTTCGAATTCATTGTTCACCGCCTTTACTTTTGTTTTTCAGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTCGAAATATCTGTACTGATGCAAATTGAGTTCTGTGATGTTTTTGATTGCTTACACTGTTATTTGCAGAAGTGGATTCAAACATGACCACCGCTGACGACTTGTTCGGCGATGTGGAAATGGGTACCCTTATATCATGCCCAGTTTGCCGTGATACCTTCAGTGAGTGCTAACAATAGCACATAAATTTTCTAAACTGAGTTTTCAGACTTGAACGAAAGGTGTCCGCTCAACATTCCATGTGGGCACACAGTTTGTACTCAATGTTCGAACTCACTATTACCACATACGGGGGCACCAGTGATGATGTGTCCAGTATGCAGAAAGAAACACATTGGCCAGATTCAGAACGGAGTATGCAGATTTCCTTTTCCAAAAAACTTCCAACTCTTGGAGGTGATTGAAAAAGTTGTAAGTCTCAAGCAGAGAGCAGACAAGACACGAGCAGAGCGACGTAGTGTCAAATGTATGGATTGCAAGAAGACATTTGCAGATGATATGTGAGGTTCGAATTCATTGTTCACCGCCTTTACTTTTGTTTTTCAGGTGCACTACGTGTAGTTGTGTTCTCATACATTCAAACAACGACTTCGATTTCTTGGTTAAGGAAACAAATCAGTCACCTTGATAGATAATGTACTTTCAGGGCCGCGCAACAAACAAATTGATTTGTGTAAGCTGTGTGCATGACGGACATAAAAATCACGACGTAAAACCGATGGAAGCAGTAAAAGCAAGTCGAAACTGTCTACGAAATTCAAGAACATCCCAATTTTAGGCAGCATCCGACAACAGACATCAAATTAATCAGCTCATGGCAGCTGCAGAAAGAGCTAAGAACAAGATTGAGGGAGCTAAGATTTCGTTGAACAACTGCCTAGACGAGCTGAATCAAGTTTGTGGAGTGAGTTTTCGTTACGAATACAGAACACGAGTGTTTTTTTGTTAAAATGTGATCTTGGTTCAGATTGTCGATCAACTGTTGACTAGTGTGAAAG</canonical>
            <polymorphic>GTTTCGAAATATCTGTACTGATGCAAATTGAGTTCTGTGATGTTTTTGATTGCTTACACTGTTATTTGCAGAAGTGGATTCAAACATGACCACCGCTGACGACTTGTTCGGCGATGTGGAAATGGGTACCCTTATATCATGCCCAGTTTGCCGTGATACCTTCAGTGAGTGCTAACAATAGCACATAAATTTTCTAAACTGAGTTTTCAGACTTGAACGAAAGGTGTCCGCTCAACATTCCATGTGGGCACACAGTTTGTACTCAATGTTCGAACTCACTATTACCACATACGGGGGCACCAGTGATGATGTGTCCAGTATGCAGAAAGAAACACATTGGCCAGATTCAGAACGGAGTATGCAGATTTCCTTTTCCAAAAAACTTCCAACTCTTGGAGGTGATTGAAAAAGTTGTAAGTCTCAAGCAGAGAGCAGACAAGACACGAGCAGAGCGACGTAGTGTCAAATGTATGGATTGCAAGAAGACATTTGCAGATGAYATGTGAGGTTCGAATTCATTGTTCACCGCCTTTACTTTTGTTTTTCAGGTGCACTACGTGTAGTTGTGTTCTCATACATTCAAACAACGACTTCGATTTCTTGGTTAAGGAAACAAATCAGTCACCTTGATAGATAATGTACTTTCAGGGCCGCGCAACAAACAAATTGATTTGTGTAAGCTGTGTGCATGACGGACATAAAAATCACGACGTAAAACCGATGGAAGCAGTAAAAGCAAGTCGAAACTGTCTACGAAATTCAAGAACATCCCAATTTTAGGCAGCATCCGACAACAGACATCAAATTAATCAGCTCATGGCAGCTGCAGAAAGAGCTAAGAACAAGATTGAGGGAGCTAAGATTTCGTTGAACAACTGCCTAGACGAGCTGAATCAAGTTTGTGGAGTGAGTTTTCGTTACGAATACAGAACACGAGTGTTTTTTTGTTAAAATGTGATCTTGGTTCAGATTGTCGATCAACTGTTGACTAGTGTGAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGTTGTAAGTCTCAAGCAGAG</pcr_primer_p1>
		<pcr_primer_p2>GGCCCTGAAAGTACATTATCTAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAAGTTGTAAGTCTCAAGCAGAGAGCAGACAAGACACGAGCAGAGCGACGTAGTGTCAAATGTATGGATTGCAAGAAGACATTTGCAGATGATATGTGAGGTTCGAATTCATTGTTCACCGCCTTTACTTTTGTTTTTCAGGTGCACTACGTGTAGTTGTGTTCTCATACATTCAAACAACGACTTCGATTTCTTGGTTAAGGAAACAAATCAGTCACCTTGATAGATAATGTACTTTCAGGGCC</canonical_amplicon>
		<polymorphic_amplicon>AAAGTTGTAAGTCTCAAGCAGAGAGCAGACAAGACACGAGCAGAGCGACGTAGTGTCAAATGTATGGATTGCAAGAAGACATTTGCAGATGAYATGTGAGGTTCGAATTCATTGTTCACCGCCTTTACTTTTGTTTTTCAGGTGCACTACGTGTAGTTGTGTTCTCATACATTCAAACAACGACTTCGATTTCTTGGTTAAGGAAACAAATCAGTCACCTTGATAGATAATGTACTTTCAGGGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14946</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>346815</contig_pos>
        <strand>+</strand>
        <context>CAAAGAATGG[C/T]TTAAACCAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTTCAAATCTGATAAAATAAAAAATTTTCCTCTTAAATACAAAGAATGG</left_flank>
        <right_flank>TTAAACCAGTTTTTGGGATTGAAAATATTATGAAACGGACAGAATAGAAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCCCAGATGATGCCGGCGAAGCTGTAGTTAGACGAGGACGAGGAAGACCTCCAGGAAGAGGAGCGAGAGCTAGAGAAGAGCAAGCTATGGCTGGAGGTAACGGTGCGAGAAGAGGAGCAGCTGCCGTGGCTAGAGGGAACGCTGCGAGAAGAGGCGATGCTCCCGCTGCTGGGCGAAACGTTGCTGGAAGACCAGCAGCTCCAGTGGCAGGAAACGCGAGAAGAAGAGGAAGACCCGTTGCTGCGCGCCACAATCCAATTAACCAGGATCTCAGAGGCGGACGTAGAAACCGTCGTCAAAGTAACTAAGTCTGTTAGATGTTCTGCTTCCAATATCATTTTTACAGATGCATGACAGTAATTCAACTAATACTGAAACAATCATCACATCATACTAATAATCACCAAAGTTTTTCAAATTAATTGTACTATCACATTCATTACTTTTTGTTCAAATCTGATAAAATAAAAAATTTTCCTCTTAAATACAAAGAATGGCTTAAACCAGTTTTTGGGATTGAAAATATTATGAAACGGACAGAATAGAAAAGCTTCAAGACCTTGCTGAATGAAATAAAAAAAATTGAACATTACCATCTCGATTTTTCAGAAGTTTCTTTCCAACAGAAAGATTGATTAGTTCATTTCAAAACATGAGTTCCTCATGGCAAATTCTCTTATACAACCATCTCTTATACTACCTTTCTCTTATACTACCGAGTCTCTTTTATTACCACTGTCTCTTATACTACTTTTTTTCAATGTGTCTCTCATACTACCAAGTCTCTTTTACTACCAAGGTCTCTTATACTACTTCTTACCACAGAGTCTCCCATACTACCAAAAGAAACAAGGCTTTCGGCCTAAGCTTACAGTTGGCAAAAAATTTGGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAATTGGTGATTCGAGAGTACAAAATTCGTAGGTACAAAAAAATGGGATTTGAACAAAAAAAATGGGAAAGAAA</canonical>
            <polymorphic>AATCCCAGATGATGCCGGCGAAGCTGTAGTTAGACGAGGACGAGGAAGACCTCCAGGAAGAGGAGCGAGAGCTAGAGAAGAGCAAGCTATGGCTGGAGGTAACGGTGCGAGAAGAGGAGCAGCTGCCGTGGCTAGAGGGAACGCTGCGAGAAGAGGCGATGCTCCCGCTGCTGGGCGAAACGTTGCTGGAAGACCAGCAGCTCCAGTGGCAGGAAACGCGAGAAGAAGAGGAAGACCCGTTGCTGCGCGCCACAATCCAATTAACCAGGATCTCAGAGGCGGACGTAGAAACCGTCGTCAAAGTAACTAAGTCTGTTAGATGTTCTGCTTCCAATATCATTTTTACAGATGCATGACAGTAATTCAACTAATACTGAAACAATCATCACATCATACTAATAATCACCAAAGTTTTTCAAATTAATTGTACTATCACATTCATTACTTTTTGTTCAAATCTGATAAAATAAAAAATTTTCCTCTTAAATACAAAGAATGGYTTAAACCAGTTTTTGGGATTGAAAATATTATGAAACGGACAGAATAGAAAAGCTTCAAGACCTTGCTGAATGAAATAAAAAAAATTGAACATTACCATCTCGATTTTTCAGAAGTTTCTTTCCAACAGAAAGATTGATTAGTTCATTTCAAAACATGAGTTCCTCATGGCAAATTCTCTTATACAACCATCTCTTATACTACCTTTCTCTTATACTACCGAGTCTCTTTTATTACCACTGTCTCTTATACTACTTTTTTTCAATGTGTCTCTCATACTACCAAGTCTCTTTTACTACCAAGGTCTCTTATACTACTTCTTACCACAGAGTCTCCCATACTACCAAAAGAAACAAGGCTTTCGGCCTAAGCTTACAGTTGGCAAAAAATTTGGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAATTGGTGATTCGAGAGTACAAAATTCGTAGGTACAAAAAAATGGGATTTGAACAAAAAAAATGGGAAAGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>304 299 131 69 53 48 30 23 15 9 7 6 6</canonical_bands>
                <polymorphic_bands>352 304 131 69 48 30 23 15 9 7 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGATGTTCTGCTTCCAATATC</pcr_primer_p1>
		<pcr_primer_p2>AAGGTCTTGAAGCTTTTCTATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTAGATGTTCTGCTTCCAATATCATTTTTACAGATGCATGACAGTAATTCAACTAATACTGAAACAATCATCACATCATACTAATAATCACCAAAGTTTTTCAAATTAATTGTACTATCACATTCATTACTTTTTGTTCAAATCTGATAAAATAAAAAATTTTCCTCTTAAATACAAAGAATGGCTTAAACCAGTTTTTGGGATTGAAAATATTATGAAACGGACAGAATAGAAAAGCTTCAAGACCTT</canonical_amplicon>
		<polymorphic_amplicon>TTAGATGTTCTGCTTCCAATATCATTTTTACAGATGCATGACAGTAATTCAACTAATACTGAAACAATCATCACATCATACTAATAATCACCAAAGTTTTTCAAATTAATTGTACTATCACATTCATTACTTTTTGTTCAAATCTGATAAAATAAAAAATTTTCCTCTTAAATACAAAGAATGGYTTAAACCAGTTTTTGGGATTGAAAATATTATGAAACGGACAGAATAGAAAAGCTTCAAGACCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14947</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>346789</contig_pos>
        <strand>+</strand>
        <context>AAAATAAAAA[A/T]TTTTCCTCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTGTACTATCACATTCATTACTTTTTGTTCAAATCTGATAAAATAAAAA</left_flank>
        <right_flank>TTTTCCTCTTAAATACAAAGAATGGCTTAAACCAGTTTTTGGGATTGAAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACGAAGTTATTATTGTCGGTCCAGCAATCCCAGATGATGCCGGCGAAGCTGTAGTTAGACGAGGACGAGGAAGACCTCCAGGAAGAGGAGCGAGAGCTAGAGAAGAGCAAGCTATGGCTGGAGGTAACGGTGCGAGAAGAGGAGCAGCTGCCGTGGCTAGAGGGAACGCTGCGAGAAGAGGCGATGCTCCCGCTGCTGGGCGAAACGTTGCTGGAAGACCAGCAGCTCCAGTGGCAGGAAACGCGAGAAGAAGAGGAAGACCCGTTGCTGCGCGCCACAATCCAATTAACCAGGATCTCAGAGGCGGACGTAGAAACCGTCGTCAAAGTAACTAAGTCTGTTAGATGTTCTGCTTCCAATATCATTTTTACAGATGCATGACAGTAATTCAACTAATACTGAAACAATCATCACATCATACTAATAATCACCAAAGTTTTTCAAATTAATTGTACTATCACATTCATTACTTTTTGTTCAAATCTGATAAAATAAAAAATTTTCCTCTTAAATACAAAGAATGGCTTAAACCAGTTTTTGGGATTGAAAATATTATGAAACGGACAGAATAGAAAAGCTTCAAGACCTTGCTGAATGAAATAAAAAAAATTGAACATTACCATCTCGATTTTTCAGAAGTTTCTTTCCAACAGAAAGATTGATTAGTTCATTTCAAAACATGAGTTCCTCATGGCAAATTCTCTTATACAACCATCTCTTATACTACCTTTCTCTTATACTACCGAGTCTCTTTTATTACCACTGTCTCTTATACTACTTTTTTTCAATGTGTCTCTCATACTACCAAGTCTCTTTTACTACCAAGGTCTCTTATACTACTTCTTACCACAGAGTCTCCCATACTACCAAAAGAAACAAGGCTTTCGGCCTAAGCTTACAGTTGGCAAAAAATTTGGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAATTGGTGATTCGAGAGTACAAAATTCGTAGGTACAAAAAAATGGGA</canonical>
            <polymorphic>GACGAAGTTATTATTGTCGGTCCAGCAATCCCAGATGATGCCGGCGAAGCTGTAGTTAGACGAGGACGAGGAAGACCTCCAGGAAGAGGAGCGAGAGCTAGAGAAGAGCAAGCTATGGCTGGAGGTAACGGTGCGAGAAGAGGAGCAGCTGCCGTGGCTAGAGGGAACGCTGCGAGAAGAGGCGATGCTCCCGCTGCTGGGCGAAACGTTGCTGGAAGACCAGCAGCTCCAGTGGCAGGAAACGCGAGAAGAAGAGGAAGACCCGTTGCTGCGCGCCACAATCCAATTAACCAGGATCTCAGAGGCGGACGTAGAAACCGTCGTCAAAGTAACTAAGTCTGTTAGATGTTCTGCTTCCAATATCATTTTTACAGATGCATGACAGTAATTCAACTAATACTGAAACAATCATCACATCATACTAATAATCACCAAAGTTTTTCAAATTAATTGTACTATCACATTCATTACTTTTTGTTCAAATCTGATAAAATAAAAAWTTTTCCTCTTAAATACAAAGAATGGCTTAAACCAGTTTTTGGGATTGAAAATATTATGAAACGGACAGAATAGAAAAGCTTCAAGACCTTGCTGAATGAAATAAAAAAAATTGAACATTACCATCTCGATTTTTCAGAAGTTTCTTTCCAACAGAAAGATTGATTAGTTCATTTCAAAACATGAGTTCCTCATGGCAAATTCTCTTATACAACCATCTCTTATACTACCTTTCTCTTATACTACCGAGTCTCTTTTATTACCACTGTCTCTTATACTACTTTTTTTCAATGTGTCTCTCATACTACCAAGTCTCTTTTACTACCAAGGTCTCTTATACTACTTCTTACCACAGAGTCTCCCATACTACCAAAAGAAACAAGGCTTTCGGCCTAAGCTTACAGTTGGCAAAAAATTTGGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAATTGGTGATTCGAGAGTACAAAATTCGTAGGTACAAAAAAATGGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>498 214 199 64 25</canonical_bands>
                <polymorphic_bands>697 214 64 25</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>284 214 110 102 89 58 50 42 25 22 4</canonical_bands>
                <polymorphic_bands>284 214 160 102 89 58 42 25 22 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGATGTTCTGCTTCCAATATC</pcr_primer_p1>
		<pcr_primer_p2>AAGGTCTTGAAGCTTTTCTATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTAGATGTTCTGCTTCCAATATCATTTTTACAGATGCATGACAGTAATTCAACTAATACTGAAACAATCATCACATCATACTAATAATCACCAAAGTTTTTCAAATTAATTGTACTATCACATTCATTACTTTTTGTTCAAATCTGATAAAATAAAAAATTTTCCTCTTAAATACAAAGAATGGCTTAAACCAGTTTTTGGGATTGAAAATATTATGAAACGGACAGAATAGAAAAGCTTCAAGACCTT</canonical_amplicon>
		<polymorphic_amplicon>TTAGATGTTCTGCTTCCAATATCATTTTTACAGATGCATGACAGTAATTCAACTAATACTGAAACAATCATCACATCATACTAATAATCACCAAAGTTTTTCAAATTAATTGTACTATCACATTCATTACTTTTTGTTCAAATCTGATAAAATAAAAAWTTTTCCTCTTAAATACAAAGAATGGCTTAAACCAGTTTTTGGGATTGAAAATATTATGAAACGGACAGAATAGAAAAGCTTCAAGACCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14948</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>405926</contig_pos>
        <strand>+</strand>
        <context>TTTGTCAGTT[C/T]CACGAATGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTATATACTCCATTCCAGAGGAACTATATTTCGGTACACTTTTGTCAGTT</left_flank>
        <right_flank>CACGAATGAAAACTCGTTCTCGCATCTCCAGTAATAATTTGCGAGTTTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACCAGTTCCTAGAGAAATGACACATCCAATCTTCCAATTTCCTTTCTTTTCTTTTTCTTCTGCGGTTTTGGCGAAAGACTTTTCTAATTTATTTGTCAAAAGAAAATCAGAAATAAGAGCGAGAGTAGGGTTGTTAGCAATCAGGCCACCATCAGAAAGACCATTAAAGGATTCAAAAAAGTAAGGAGCTGCTCTGAAAAGTTTTCGAAATTACAACAATGTTTTGGGACTTTGATTACGTTGTACACCGAAGTGCTTTCCATAGTTCTACTTTTGCAGGATCTAGAAACTTGTAATGTTCACATACATCTTCTGGCATTTCTGGACAATACGAACGAAAAAGAAGAAGTTGTGGAGGAACCATTCGAGTGTCAGCTACAGTAACCATAGCTCTGTGTCTCTTGATAATTGACATTTTAGAATCTTCCCAAGTGGTGACGTGCCGAGCTATATACTCCATTCCAGAGGAACTATATTTCGGTACACTTTTGTCAGTTTCACGAATGAAAACTCGTTCTCGCATCTCCAGTAATAATTTGCGAGTTTCTTCTATGTTTCGATCTAAAATTGGTTAAAATAAAACAGTTGATACACATTTCGTACGAATTTGAATGTCTTTTTTTTTTAATTTTAATTTCTATTCGATGAGAAGAATTCAAACATTTTTTAACTCCAAACCCAAGAAAAATTATCCAATCACCTCTATGGCGGAAAAATTAGGATTCCTGAAACATACTGTTTGTCGAGAGTAAAAGAGTAATCACACCACCACAACTTGTTCCAGCCATATCATCAATCTTTTCAACTAATTTCCCATCAAGCATATTGTCAATATGAATGAGCATTTGGATTGTGATAACAGCTCGAATGCCACCTCCATCCAATGAAAGCAGTACTCGTTCTTCAGGCTTCCATGTTTTCTTCTCTTTTACCAAAAGGTCATTATAATGACTATCCACATCAACAAAACCTTCTGGAATTGGACTTGGAGGATTATC</canonical>
            <polymorphic>ACACCAGTTCCTAGAGAAATGACACATCCAATCTTCCAATTTCCTTTCTTTTCTTTTTCTTCTGCGGTTTTGGCGAAAGACTTTTCTAATTTATTTGTCAAAAGAAAATCAGAAATAAGAGCGAGAGTAGGGTTGTTAGCAATCAGGCCACCATCAGAAAGACCATTAAAGGATTCAAAAAAGTAAGGAGCTGCTCTGAAAAGTTTTCGAAATTACAACAATGTTTTGGGACTTTGATTACGTTGTACACCGAAGTGCTTTCCATAGTTCTACTTTTGCAGGATCTAGAAACTTGTAATGTTCACATACATCTTCTGGCATTTCTGGACAATACGAACGAAAAAGAAGAAGTTGTGGAGGAACCATTCGAGTGTCAGCTACAGTAACCATAGCTCTGTGTCTCTTGATAATTGACATTTTAGAATCTTCCCAAGTGGTGACGTGCCGAGCTATATACTCCATTCCAGAGGAACTATATTTCGGTACACTTTTGTCAGTTYCACGAATGAAAACTCGTTCTCGCATCTCCAGTAATAATTTGCGAGTTTCTTCTATGTTTCGATCTAAAATTGGTTAAAATAAAACAGTTGATACACATTTCGTACGAATTTGAATGTCTTTTTTTTTTAATTTTAATTTCTATTCGATGAGAAGAATTCAAACATTTTTTAACTCCAAACCCAAGAAAAATTATCCAATCACCTCTATGGCGGAAAAATTAGGATTCCTGAAACATACTGTTTGTCGAGAGTAAAAGAGTAATCACACCACCACAACTTGTTCCAGCCATATCATCAATCTTTTCAACTAATTTCCCATCAAGCATATTGTCAATATGAATGAGCATTTGGATTGTGATAACAGCTCGAATGCCACCTCCATCCAATGAAAGCAGTACTCGTTCTTCAGGCTTCCATGTTTTCTTCTCTTTTACCAAAAGGTCATTATAATGACTATCCACATCAACAAAACCTTCTGGAATTGGACTTGGAGGATTATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>285 230 226 79 61 39 37 24 19</canonical_bands>
                <polymorphic_bands>285 263 230 79 61 39 24 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCTATATACTCCATTCCAGAGG</pcr_primer_p1>
		<pcr_primer_p2>GGATAATTTTTCTTGGGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGCTATATACTCCATTCCAGAGGAACTATATTTCGGTACACTTTTGTCAGTTTCACGAATGAAAACTCGTTCTCGCATCTCCAGTAATAATTTGCGAGTTTCTTCTATGTTTCGATCTAAAATTGGTTAAAATAAAACAGTTGATACACATTTCGTACGAATTTGAATGTCTTTTTTTTTTAATTTTAATTTCTATTCGATGAGAAGAATTCAAACATTTTTTAACTCCAAACCCAAGAAAAATTATCC</canonical_amplicon>
		<polymorphic_amplicon>AGCTATATACTCCATTCCAGAGGAACTATATTTCGGTACACTTTTGTCAGTTYCACGAATGAAAACTCGTTCTCGCATCTCCAGTAATAATTTGCGAGTTTCTTCTATGTTTCGATCTAAAATTGGTTAAAATAAAACAGTTGATACACATTTCGTACGAATTTGAATGTCTTTTTTTTTTAATTTTAATTTCTATTCGATGAGAAGAATTCAAACATTTTTTAACTCCAAACCCAAGAAAAATTATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14969</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>498502</contig_pos>
        <strand>+</strand>
        <context>AAAACGGATG[A/T]TATATAATCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACGACGTCACTGAGTTGTTTATAAGAAGCCAAGTGTTCTGAAAACGGATG</left_flank>
        <right_flank>TATATAATCCGGATTAAAAGGAAAGTTCACCTTTGACAATCTTCATAATC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATCTTCTCTTTGTGCTGAACTGTTTCCCAAGAATCGTCTTGCTTCCCATGGCTTCTTTCTGAGAACCATTGATTCCTCTTCTTATTCATTCTTTTGGTTTCTTATCATTTCATTCTTCTGAGATGAAGCTCCTCTATTTCCTTCTTGCTGTATTATCTGTGTCCATCGCTGAAGCTCAACGTAGAACATTTCCGGTATCACTATTTATTGCATTATCAAAGAAAAATAAAACAATTTTCCAGAGACGCGACTCAGGACATGGGCTGATGGGCGGAAAGATTGGAATGGCTATCAAAAATCCAATCAAGGGGCCAGCAGCCAAGAACAAAGCAAAGGGTTAATTCATTGAAAAGTTTCAAATAAAGTTATCGAGTATTTAATTATTATTGGAGTAGATGATGTCGCATCAACTTTCCAGACGAATTTCGCGGAAGTTCTGATACAAAAACGACGTCACTGAGTTGTTTATAAGAAGCCAAGTGTTCTGAAAACGGATGATATATAATCCGGATTAAAAGGAAAGTTCACCTTTGACAATCTTCATAATCTCTTGTTTCAAGTCAGGATTACCAATGACTTTTGCTATTAACTTGTCAGGAATAGCACTCTGAAAGTTAAAAACTCTTCCTTAAAAAGGATTCAAGGGGAACTTCGACCGAAATTTTTTCTTGCATAAATATGTTCGAAAAGTTATGTATTTACTAAATGAACTTAAAATACTTGTTTAGTTTGCATCTGCATTTCCATTTAGTTCCCTGCAACCAACGGTAAAGACCTACTGTTAAATATAGAAACAAAGAAAAAATTGACAAAATTTTTAAACCTTTTTAGGTTTTCTAACTATTTTCAAAGATTCTTTCTCGATTTTAACGGTTTTTTTGTCTGAAATTTTTTGGAACGGTATTCGTGATGATTACTTCAGATTACTGTAGACTCTTCCTTTTGTATTTTGCAAACACAAAAAAGGAGAAAAAAAAAGTGATTTTGTTTGCAAAAAA</canonical>
            <polymorphic>AGATCTTCTCTTTGTGCTGAACTGTTTCCCAAGAATCGTCTTGCTTCCCATGGCTTCTTTCTGAGAACCATTGATTCCTCTTCTTATTCATTCTTTTGGTTTCTTATCATTTCATTCTTCTGAGATGAAGCTCCTCTATTTCCTTCTTGCTGTATTATCTGTGTCCATCGCTGAAGCTCAACGTAGAACATTTCCGGTATCACTATTTATTGCATTATCAAAGAAAAATAAAACAATTTTCCAGAGACGCGACTCAGGACATGGGCTGATGGGCGGAAAGATTGGAATGGCTATCAAAAATCCAATCAAGGGGCCAGCAGCCAAGAACAAAGCAAAGGGTTAATTCATTGAAAAGTTTCAAATAAAGTTATCGAGTATTTAATTATTATTGGAGTAGATGATGTCGCATCAACTTTCCAGACGAATTTCGCGGAAGTTCTGATACAAAAACGACGTCACTGAGTTGTTTATAAGAAGCCAAGTGTTCTGAAAACGGATGWTATATAATCCGGATTAAAAGGAAAGTTCACCTTTGACAATCTTCATAATCTCTTGTTTCAAGTCAGGATTACCAATGACTTTTGCTATTAACTTGTCAGGAATAGCACTCTGAAAGTTAAAAACTCTTCCTTAAAAAGGATTCAAGGGGAACTTCGACCGAAATTTTTTCTTGCATAAATATGTTCGAAAAGTTATGTATTTACTAAATGAACTTAAAATACTTGTTTAGTTTGCATCTGCATTTCCATTTAGTTCCCTGCAACCAACGGTAAAGACCTACTGTTAAATATAGAAACAAAGAAAAAATTGACAAAATTTTTAAACCTTTTTAGGTTTTCTAACTATTTTCAAAGATTCTTTCTCGATTTTAACGGTTTTTTTGTCTGAAATTTTTTGGAACGGTATTCGTGATGATTACTTCAGATTACTGTAGACTCTTCCTTTTGTATTTTGCAAACACAAAAAAGGAGAAAAAAAAAGTGATTTTGTTTGCAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGGGTTAATTCATTGAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGTCATTGGTAATCCTGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGGGTTAATTCATTGAAAAGTTTCAAATAAAGTTATCGAGTATTTAATTATTATTGGAGTAGATGATGTCGCATCAACTTTCCAGACGAATTTCGCGGAAGTTCTGATACAAAAACGACGTCACTGAGTTGTTTATAAGAAGCCAAGTGTTCTGAAAACGGATGATATATAATCCGGATTAAAAGGAAAGTTCACCTTTGACAATCTTCATAATCTCTTGTTTCAAGTCAGGATTACCAATGACTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAGGGTTAATTCATTGAAAAGTTTCAAATAAAGTTATCGAGTATTTAATTATTATTGGAGTAGATGATGTCGCATCAACTTTCCAGACGAATTTCGCGGAAGTTCTGATACAAAAACGACGTCACTGAGTTGTTTATAAGAAGCCAAGTGTTCTGAAAACGGATGWTATATAATCCGGATTAAAAGGAAAGTTCACCTTTGACAATCTTCATAATCTCTTGTTTCAAGTCAGGATTACCAATGACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14970</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>501041</contig_pos>
        <strand>+</strand>
        <context>AATCTACAGT[C/T]ACAtwctgta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTGTATCTACAGTATCAATTTTCTTCAAAACATTGGAAGAATCTACAGT</left_flank>
        <right_flank>ACATACTGTAAAACTGTAATAAAACGCCACCTGTATGTAGTAAGATGCCC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCCCACTAGTTGTGATGCAATTATTATGGCTAATATGTCAGGCGAGTTCTGGCAAAAGATGGAAACACGAAAAAGGTTTGTGGATCTGAAAGTTGAGCCATTTTGATTGTTCTCATAATGTGATCACAAACCTTTTCTTCTGCCTTTCCAATATATTTTTCCATTTTTCCACAAGCTTCCGTAAATCATCAAATGGAATTTCATTGTCTCGCCAAATCTATAAAAAATATTACATACAAAAAATCATTCAACGCCATGGAGTTATATTAAAAATCACTTACCAATGCAGTTTTACTTCCAAACTTGGAAACTTCTTCCAGAAACTCTAGACCAAAGTTTCTTCCCATTTTGTTGTGTTGAAGAAATTGTACAAACTGGAAGAAGTGTCATCCTCCTACCTCAATTTCCTTCAATTTTCTAAATTGGCCTTCATTATTCTTTGTTTTCAGTGTATCTACAGTATCAATTTTCTTCAAAACATTGGAAGAATCTACAGTCACATACTGTAAAACTGTAATAAAACGCCACCTGTATGTAGTAAGATGCCCCCTCTAACACAACGCCATCCTTATACAGGTATTACTCTGGTCTAATTTCGATGCGCGTTGTGGCCGAAAATACGACGATGTGCGGAGCTTAAGTCCGGTGGTGAAATCCTTACAGGCGCATTTGAAGGAGCATGTATTTTCGTGAATATTTTCTGGCCTTTTTTCGATTTTTCGAAAAAAAATAAGAATAAAGTGTTTTCCTGATTTGGGTAGCGGAGAAATCTGAAAAATCCACACCATTTTCTTATGATGCTACCCTAATGATCCGGCAACAAAACAATTTTTGTTACCTTGCATCACCCAAAAAAAACCTCTCCAAAAAATAACGCCATAGATTTATATTACAGTTCTTACTGTATGTTAATAACTCATATGCAACACCTACACAAATAATAAAACTCATAAAAGTGAATCGAAATGATATATAAATCTCTTGCGCTATGTTTTTTA</canonical>
            <polymorphic>ATTCCCACTAGTTGTGATGCAATTATTATGGCTAATATGTCAGGCGAGTTCTGGCAAAAGATGGAAACACGAAAAAGGTTTGTGGATCTGAAAGTTGAGCCATTTTGATTGTTCTCATAATGTGATCACAAACCTTTTCTTCTGCCTTTCCAATATATTTTTCCATTTTTCCACAAGCTTCCGTAAATCATCAAATGGAATTTCATTGTCTCGCCAAATCTATAAAAAATATTACATACAAAAAATCATTCAACGCCATGGAGTTATATTAAAAATCACTTACCAATGCAGTTTTACTTCCAAACTTGGAAACTTCTTCCAGAAACTCTAGACCAAAGTTTCTTCCCATTTTGTTGTGTTGAAGAAATTGTACAAACTGGAAGAAGTGTCATCCTCCTACCTCAATTTCCTTCAATTTTCTAAATTGGCCTTCATTATTCTTTGTTTTCAGTGTATCTACAGTATCAATTTTCTTCAAAACATTGGAAGAATCTACAGTYACATACTGTAAAACTGTAATAAAACGCCACCTGTATGTAGTAAGATGCCCCCTCTAACACAACGCCATCCTTATACAGGTATTACTCTGGTCTAATTTCGATGCGCGTTGTGGCCGAAAATACGACGATGTGCGGAGCTTAAGTCCGGTGGTGAAATCCTTACAGGCGCATTTGAAGGAGCATGTATTTTCGTGAATATTTTCTGGCCTTTTTTCGATTTTTCGAAAAAAAATAAGAATAAAGTGTTTTCCTGATTTGGGTAGCGGAGAAATCTGAAAAATCCACACCATTTTCTTATGATGCTACCCTAATGATCCGGCAACAAAACAATTTTTGTTACCTTGCATCACCCAAAAAAAACCTCTCCAAAAAATAACGCCATAGATTTATATTACAGTTCTTACTGTATGTTAATAACTCATATGCAACACCTACACAAATAATAAAACTCATAAAAGTGAATCGAAATGATATATAAATCTCTTGCGCTATGTTTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>105 81 80 65 63 53 53 51 48 45 41 40 40 39 30 30 28 24 20 18 15 9 7 6 4 3 2</canonical_bands>
                <polymorphic_bands>105 81 80 76 65 63 53 53 51 45 41 40 40 39 30 30 24 20 18 15 9 7 6 4 3 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTTTTCAGTGTATCTACAGTATCA</pcr_primer_p1>
		<pcr_primer_p2>TCAGGAAAACACTTTATTCTTATTT</pcr_primer_p2>
		<pcr_amplicon_size>313</pcr_amplicon_size>
		<canonical_amplicon>TTGTTTTCAGTGTATCTACAGTATCAATTTTCTTCAAAACATTGGAAGAATCTACAGTCACATACTGTAAAACTGTAATAAAACGCCACCTGTATGTAGTAAGATGCCCCCTCTAACACAACGCCATCCTTATACAGGTATTACTCTGGTCTAATTTCGATGCGCGTTGTGGCCGAAAATACGACGATGTGCGGAGCTTAAGTCCGGTGGTGAAATCCTTACAGGCGCATTTGAAGGAGCATGTATTTTCGTGAATATTTTCTGGCCTTTTTTCGATTTTTCGAAAAAAAATAAGAATAAAGTGTTTTCCTGA</canonical_amplicon>
		<polymorphic_amplicon>TTGTTTTCAGTGTATCTACAGTATCAATTTTCTTCAAAACATTGGAAGAATCTACAGTYACATACTGTAAAACTGTAATAAAACGCCACCTGTATGTAGTAAGATGCCCCCTCTAACACAACGCCATCCTTATACAGGTATTACTCTGGTCTAATTTCGATGCGCGTTGTGGCCGAAAATACGACGATGTGCGGAGCTTAAGTCCGGTGGTGAAATCCTTACAGGCGCATTTGAAGGAGCATGTATTTTCGTGAATATTTTCTGGCCTTTTTTCGATTTTTCGAAAAAAAATAAGAATAAAGTGTTTTCCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14971</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>537083</contig_pos>
        <strand>+</strand>
        <context>TTGTTTTCAA[A/T]TCTCTTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCTTATATGTTATTCATACGCAACTTAATTTTCGAATAAATTGTTTTCAA</left_flank>
        <right_flank>TCTCTTTTTTTGTAGACAAAACGAAATGGAGAAATGAAAACACCAAAACG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTTATATCCTTCTTTTTTTCAGAATGAAACGACGACAATTCCAACAACAACAACTAAATCTTCATACATTCCTGAATTCCGTGCAGTCCTTTCTCCTTTCTGGTTCCTTGCCGTTGCAATCGGAGTTGCTGCAATTTGTTTCGGACTCAATGTAACACTTTGTGTCGTCTATTGTTTCTATTGTCGAAGGAAAAAACGAAGTCAAAAAGCACATATATCCACTGTTAAAGGTGGACCAACATTACATGCTTATAATCCACAAATATGATCATTTATAGTATAATTATTCTTCGCTATTCTAGTCATTGTTATTATTTTGTCTCCGGTGTTTCTGCTCATTTTTTATGTAAATATTCTTATATCTAACGGGTGTCACTTTTCTTTTTTCTCTTTTTTCTCCCACTTATTTTTTCTCCGTTTTCCACTTTCCGTTCTACCTCAACTTGCCTTATATGTTATTCATACGCAACTTAATTTTCGAATAAATTGTTTTCAAATCTCTTTTTTTGTAGACAAAACGAAATGGAGAAATGAAAACACCAAAACGAGTTGATTCCATTTTGGAAAATGGCAAAAGGGACCGAAACAGAAAGAAAAAAGAAGAAGAGAGTGATTGAATTTCTGGCATTTTGTGGCGCATCCCACTTTCCGGCAGAGAAAAGCTTCCATTTCCCTCCCCTTCCAACCCCAAAAATATTTCCCTTTTTCCTATTTATTCTATTCCTTTTTTTTCTTTTTATTTTATTCTCATGGGCCCAATACCATCAATTTCTCACCAAACTCTTTTCTAACCCCACACATTTTTTAGACTTTTCAAATTCAAATCCAAAAAAGAAGGTGCTTGCCTTTTTCGTTTTCTTCATCAACAATTTATGAACACTTTTTTGTTTTTTTTCAGTTTCCCGGAGGGCACAAACTCACTTTTCGAAAAAAGATCACAAAGTTTTCTTTCACTTTTGTATAGTTTTGTAGTTTTGAAAGATTGAAAGATGTGTCT</canonical>
            <polymorphic>CATTTTATATCCTTCTTTTTTTCAGAATGAAACGACGACAATTCCAACAACAACAACTAAATCTTCATACATTCCTGAATTCCGTGCAGTCCTTTCTCCTTTCTGGTTCCTTGCCGTTGCAATCGGAGTTGCTGCAATTTGTTTCGGACTCAATGTAACACTTTGTGTCGTCTATTGTTTCTATTGTCGAAGGAAAAAACGAAGTCAAAAAGCACATATATCCACTGTTAAAGGTGGACCAACATTACATGCTTATAATCCACAAATATGATCATTTATAGTATAATTATTCTTCGCTATTCTAGTCATTGTTATTATTTTGTCTCCGGTGTTTCTGCTCATTTTTTATGTAAATATTCTTATATCTAACGGGTGTCACTTTTCTTTTTTCTCTTTTTTCTCCCACTTATTTTTTCTCCGTTTTCCACTTTCCGTTCTACCTCAACTTGCCTTATATGTTATTCATACGCAACTTAATTTTCGAATAAATTGTTTTCAAWTCTCTTTTTTTGTAGACAAAACGAAATGGAGAAATGAAAACACCAAAACGAGTTGATTCCATTTTGGAAAATGGCAAAAGGGACCGAAACAGAAAGAAAAAAGAAGAAGAGAGTGATTGAATTTCTGGCATTTTGTGGCGCATCCCACTTTCCGGCAGAGAAAAGCTTCCATTTCCCTCCCCTTCCAACCCCAAAAATATTTCCCTTTTTCCTATTTATTCTATTCCTTTTTTTTCTTTTTATTTTATTCTCATGGGCCCAATACCATCAATTTCTCACCAAACTCTTTTCTAACCCCACACATTTTTTAGACTTTTCAAATTCAAATCCAAAAAAGAAGGTGCTTGCCTTTTTCGTTTTCTTCATCAACAATTTATGAACACTTTTTTGTTTTTTTTCAGTTTCCCGGAGGGCACAAACTCACTTTTCGAAAAAAGATCACAAAGTTTTCTTTCACTTTTGTATAGTTTTGTAGTTTTGAAAGATTGAAAGATGTGTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTATTATTTTGTCTCCGGTGT</pcr_primer_p1>
		<pcr_primer_p2>AATCAACTCGTTTTGGTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTATTATTTTGTCTCCGGTGTTTCTGCTCATTTTTTATGTAAATATTCTTATATCTAACGGGTGTCACTTTTCTTTTTTCTCTTTTTTCTCCCACTTATTTTTTCTCCGTTTTCCACTTTCCGTTCTACCTCAACTTGCCTTATATGTTATTCATACGCAACTTAATTTTCGAATAAATTGTTTTCAAATCTCTTTTTTTGTAGACAAAACGAAATGGAGAAATGAAAACACCAAAACGAGTTGATT</canonical_amplicon>
		<polymorphic_amplicon>GTTATTATTTTGTCTCCGGTGTTTCTGCTCATTTTTTATGTAAATATTCTTATATCTAACGGGTGTCACTTTTCTTTTTTCTCTTTTTTCTCCCACTTATTTTTTCTCCGTTTTCCACTTTCCGTTCTACCTCAACTTGCCTTATATGTTATTCATACGCAACTTAATTTTCGAATAAATTGTTTTCAAWTCTCTTTTTTTGTAGACAAAACGAAATGGAGAAATGAAAACACCAAAACGAGTTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14972</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>537039</contig_pos>
        <strand>+</strand>
        <context>CTTGCCTTAT[A/C]TGTTATTCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTATTTTTTCTCCGTTTTCCACTTTCCGTTCTACCTCAACTTGCCTTAT</left_flank>
        <right_flank>TGTTATTCATACGCAACTTAATTTTCGAATAAATTGTTTTCAAATCTCTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCAGAAAACCTTTACTACAGTTTAAACCAACTTTGTAAGATACATTTTATATCCTTCTTTTTTTCAGAATGAAACGACGACAATTCCAACAACAACAACTAAATCTTCATACATTCCTGAATTCCGTGCAGTCCTTTCTCCTTTCTGGTTCCTTGCCGTTGCAATCGGAGTTGCTGCAATTTGTTTCGGACTCAATGTAACACTTTGTGTCGTCTATTGTTTCTATTGTCGAAGGAAAAAACGAAGTCAAAAAGCACATATATCCACTGTTAAAGGTGGACCAACATTACATGCTTATAATCCACAAATATGATCATTTATAGTATAATTATTCTTCGCTATTCTAGTCATTGTTATTATTTTGTCTCCGGTGTTTCTGCTCATTTTTTATGTAAATATTCTTATATCTAACGGGTGTCACTTTTCTTTTTTCTCTTTTTTCTCCCACTTATTTTTTCTCCGTTTTCCACTTTCCGTTCTACCTCAACTTGCCTTATATGTTATTCATACGCAACTTAATTTTCGAATAAATTGTTTTCAAATCTCTTTTTTTGTAGACAAAACGAAATGGAGAAATGAAAACACCAAAACGAGTTGATTCCATTTTGGAAAATGGCAAAAGGGACCGAAACAGAAAGAAAAAAGAAGAAGAGAGTGATTGAATTTCTGGCATTTTGTGGCGCATCCCACTTTCCGGCAGAGAAAAGCTTCCATTTCCCTCCCCTTCCAACCCCAAAAATATTTCCCTTTTTCCTATTTATTCTATTCCTTTTTTTTCTTTTTATTTTATTCTCATGGGCCCAATACCATCAATTTCTCACCAAACTCTTTTCTAACCCCACACATTTTTTAGACTTTTCAAATTCAAATCCAAAAAAGAAGGTGCTTGCCTTTTTCGTTTTCTTCATCAACAATTTATGAACACTTTTTTGTTTTTTTTCAGTTTCCCGGAGGGCACAAACTCACTTTTCGAAAAAAGATCACAAAGTTTTCTTTCA</canonical>
            <polymorphic>TCTCAGAAAACCTTTACTACAGTTTAAACCAACTTTGTAAGATACATTTTATATCCTTCTTTTTTTCAGAATGAAACGACGACAATTCCAACAACAACAACTAAATCTTCATACATTCCTGAATTCCGTGCAGTCCTTTCTCCTTTCTGGTTCCTTGCCGTTGCAATCGGAGTTGCTGCAATTTGTTTCGGACTCAATGTAACACTTTGTGTCGTCTATTGTTTCTATTGTCGAAGGAAAAAACGAAGTCAAAAAGCACATATATCCACTGTTAAAGGTGGACCAACATTACATGCTTATAATCCACAAATATGATCATTTATAGTATAATTATTCTTCGCTATTCTAGTCATTGTTATTATTTTGTCTCCGGTGTTTCTGCTCATTTTTTATGTAAATATTCTTATATCTAACGGGTGTCACTTTTCTTTTTTCTCTTTTTTCTCCCACTTATTTTTTCTCCGTTTTCCACTTTCCGTTCTACCTCAACTTGCCTTATMTGTTATTCATACGCAACTTAATTTTCGAATAAATTGTTTTCAAATCTCTTTTTTTGTAGACAAAACGAAATGGAGAAATGAAAACACCAAAACGAGTTGATTCCATTTTGGAAAATGGCAAAAGGGACCGAAACAGAAAGAAAAAAGAAGAAGAGAGTGATTGAATTTCTGGCATTTTGTGGCGCATCCCACTTTCCGGCAGAGAAAAGCTTCCATTTCCCTCCCCTTCCAACCCCAAAAATATTTCCCTTTTTCCTATTTATTCTATTCCTTTTTTTTCTTTTTATTTTATTCTCATGGGCCCAATACCATCAATTTCTCACCAAACTCTTTTCTAACCCCACACATTTTTTAGACTTTTCAAATTCAAATCCAAAAAAGAAGGTGCTTGCCTTTTTCGTTTTCTTCATCAACAATTTATGAACACTTTTTTGTTTTTTTTCAGTTTCCCGGAGGGCACAAACTCACTTTTCGAAAAAAGATCACAAAGTTTTCTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTCGCTATTCTAGTCATTGT</pcr_primer_p1>
		<pcr_primer_p2>TTCTCCATTTCGTTTTGTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTCTTCGCTATTCTAGTCATTGTTATTATTTTGTCTCCGGTGTTTCTGCTCATTTTTTATGTAAATATTCTTATATCTAACGGGTGTCACTTTTCTTTTTTCTCTTTTTTCTCCCACTTATTTTTTCTCCGTTTTCCACTTTCCGTTCTACCTCAACTTGCCTTATATGTTATTCATACGCAACTTAATTTTCGAATAAATTGTTTTCAAATCTCTTTTTTTGTAGACAAAACGAAATGGAGAA</canonical_amplicon>
		<polymorphic_amplicon>TTCTTCGCTATTCTAGTCATTGTTATTATTTTGTCTCCGGTGTTTCTGCTCATTTTTTATGTAAATATTCTTATATCTAACGGGTGTCACTTTTCTTTTTTCTCTTTTTTCTCCCACTTATTTTTTCTCCGTTTTCCACTTTCCGTTCTACCTCAACTTGCCTTATMTGTTATTCATACGCAACTTAATTTTCGAATAAATTGTTTTCAAATCTCTTTTTTTGTAGACAAAACGAAATGGAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14973</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>537028</contig_pos>
        <strand>+</strand>
        <context>TTCTACCTCA[A/T]CTTGCCTTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTCTCCCACTTATTTTTTCTCCGTTTTCCACTTTCCGTTCTACCTCA</left_flank>
        <right_flank>CTTGCCTTATATGTTATTCATACGCAACTTAATTTTCGAATAAATTGTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCTATACTTCTCAGAAAACCTTTACTACAGTTTAAACCAACTTTGTAAGATACATTTTATATCCTTCTTTTTTTCAGAATGAAACGACGACAATTCCAACAACAACAACTAAATCTTCATACATTCCTGAATTCCGTGCAGTCCTTTCTCCTTTCTGGTTCCTTGCCGTTGCAATCGGAGTTGCTGCAATTTGTTTCGGACTCAATGTAACACTTTGTGTCGTCTATTGTTTCTATTGTCGAAGGAAAAAACGAAGTCAAAAAGCACATATATCCACTGTTAAAGGTGGACCAACATTACATGCTTATAATCCACAAATATGATCATTTATAGTATAATTATTCTTCGCTATTCTAGTCATTGTTATTATTTTGTCTCCGGTGTTTCTGCTCATTTTTTATGTAAATATTCTTATATCTAACGGGTGTCACTTTTCTTTTTTCTCTTTTTTCTCCCACTTATTTTTTCTCCGTTTTCCACTTTCCGTTCTACCTCAACTTGCCTTATATGTTATTCATACGCAACTTAATTTTCGAATAAATTGTTTTCAAATCTCTTTTTTTGTAGACAAAACGAAATGGAGAAATGAAAACACCAAAACGAGTTGATTCCATTTTGGAAAATGGCAAAAGGGACCGAAACAGAAAGAAAAAAGAAGAAGAGAGTGATTGAATTTCTGGCATTTTGTGGCGCATCCCACTTTCCGGCAGAGAAAAGCTTCCATTTCCCTCCCCTTCCAACCCCAAAAATATTTCCCTTTTTCCTATTTATTCTATTCCTTTTTTTTCTTTTTATTTTATTCTCATGGGCCCAATACCATCAATTTCTCACCAAACTCTTTTCTAACCCCACACATTTTTTAGACTTTTCAAATTCAAATCCAAAAAAGAAGGTGCTTGCCTTTTTCGTTTTCTTCATCAACAATTTATGAACACTTTTTTGTTTTTTTTCAGTTTCCCGGAGGGCACAAACTCACTTTTCGAAAAAAGATCACAAA</canonical>
            <polymorphic>TTTTCTATACTTCTCAGAAAACCTTTACTACAGTTTAAACCAACTTTGTAAGATACATTTTATATCCTTCTTTTTTTCAGAATGAAACGACGACAATTCCAACAACAACAACTAAATCTTCATACATTCCTGAATTCCGTGCAGTCCTTTCTCCTTTCTGGTTCCTTGCCGTTGCAATCGGAGTTGCTGCAATTTGTTTCGGACTCAATGTAACACTTTGTGTCGTCTATTGTTTCTATTGTCGAAGGAAAAAACGAAGTCAAAAAGCACATATATCCACTGTTAAAGGTGGACCAACATTACATGCTTATAATCCACAAATATGATCATTTATAGTATAATTATTCTTCGCTATTCTAGTCATTGTTATTATTTTGTCTCCGGTGTTTCTGCTCATTTTTTATGTAAATATTCTTATATCTAACGGGTGTCACTTTTCTTTTTTCTCTTTTTTCTCCCACTTATTTTTTCTCCGTTTTCCACTTTCCGTTCTACCTCAWCTTGCCTTATATGTTATTCATACGCAACTTAATTTTCGAATAAATTGTTTTCAAATCTCTTTTTTTGTAGACAAAACGAAATGGAGAAATGAAAACACCAAAACGAGTTGATTCCATTTTGGAAAATGGCAAAAGGGACCGAAACAGAAAGAAAAAAGAAGAAGAGAGTGATTGAATTTCTGGCATTTTGTGGCGCATCCCACTTTCCGGCAGAGAAAAGCTTCCATTTCCCTCCCCTTCCAACCCCAAAAATATTTCCCTTTTTCCTATTTATTCTATTCCTTTTTTTTCTTTTTATTTTATTCTCATGGGCCCAATACCATCAATTTCTCACCAAACTCTTTTCTAACCCCACACATTTTTTAGACTTTTCAAATTCAAATCCAAAAAAGAAGGTGCTTGCCTTTTTCGTTTTCTTCATCAACAATTTATGAACACTTTTTTGTTTTTTTTCAGTTTCCCGGAGGGCACAAACTCACTTTTCGAAAAAAGATCACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTCGCTATTCTAGTCATTGT</pcr_primer_p1>
		<pcr_primer_p2>TTCTCCATTTCGTTTTGTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTCTTCGCTATTCTAGTCATTGTTATTATTTTGTCTCCGGTGTTTCTGCTCATTTTTTATGTAAATATTCTTATATCTAACGGGTGTCACTTTTCTTTTTTCTCTTTTTTCTCCCACTTATTTTTTCTCCGTTTTCCACTTTCCGTTCTACCTCAACTTGCCTTATATGTTATTCATACGCAACTTAATTTTCGAATAAATTGTTTTCAAATCTCTTTTTTTGTAGACAAAACGAAATGGAGAA</canonical_amplicon>
		<polymorphic_amplicon>TTCTTCGCTATTCTAGTCATTGTTATTATTTTGTCTCCGGTGTTTCTGCTCATTTTTTATGTAAATATTCTTATATCTAACGGGTGTCACTTTTCTTTTTTCTCTTTTTTCTCCCACTTATTTTTTCTCCGTTTTCCACTTTCCGTTCTACCTCAWCTTGCCTTATATGTTATTCATACGCAACTTAATTTTCGAATAAATTGTTTTCAAATCTCTTTTTTTGTAGACAAAACGAAATGGAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14974</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>536671</contig_pos>
        <strand>+</strand>
        <context>AATTCCGTGC[A/G]GTCCTTTCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAATTCCAACAACAACAACTAAATCTTCATACATTCCTGAATTCCGTGC</left_flank>
        <right_flank>GTCCTTTCTCCTTTCTGGTTCCTTGCCGTTGCAATCGGAGTTGCTGCAAT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGAATATACCGTAAACATTCTAATAGAATGCCAAAGTTTCCAGTGTATATGTAATTGAAGAGCTCCCACACTATCAATTTCGAGTCAATTTACCTCATTTCCTGTAAAAGGTAACAAAAAGTGGTTGACTGACAAAATGTTTATCATAATATCAAATATATTTGGTCAGTGAGCATATCTTTTACAGGAAATGAGATATATTGGCTTAAAGTTGTAAGTTTAGTATTTGGTCCTTTCATTGTGTAGAAAGTATCCATCTGAGTTTCAGCAACATTGCCATTCATGAAAGGGGAACTATTAATTTCTGTAAAAGTTAGTTTTGAATATCGAGATCACACTTTTCTATTGGGTGTAGCTTTTCTATACTTCTCAGAAAACCTTTACTACAGTTTAAACCAACTTTGTAAGATACATTTTATATCCTTCTTTTTTTCAGAATGAAACGACGACAATTCCAACAACAACAACTAAATCTTCATACATTCCTGAATTCCGTGCAGTCCTTTCTCCTTTCTGGTTCCTTGCCGTTGCAATCGGAGTTGCTGCAATTTGTTTCGGACTCAATGTAACACTTTGTGTCGTCTATTGTTTCTATTGTCGAAGGAAAAAACGAAGTCAAAAAGCACATATATCCACTGTTAAAGGTGGACCAACATTACATGCTTATAATCCACAAATATGATCATTTATAGTATAATTATTCTTCGCTATTCTAGTCATTGTTATTATTTTGTCTCCGGTGTTTCTGCTCATTTTTTATGTAAATATTCTTATATCTAACGGGTGTCACTTTTCTTTTTTCTCTTTTTTCTCCCACTTATTTTTTCTCCGTTTTCCACTTTCCGTTCTACCTCAACTTGCCTTATATGTTATTCATACGCAACTTAATTTTCGAATAAATTGTTTTCAAATCTCTTTTTTTGTAGACAAAACGAAATGGAGAAATGAAAACACCAAAACGAGTTGATTCCATTTTGGAAAATGGCAAAAGGGACCGAA</canonical>
            <polymorphic>CCGAATATACCGTAAACATTCTAATAGAATGCCAAAGTTTCCAGTGTATATGTAATTGAAGAGCTCCCACACTATCAATTTCGAGTCAATTTACCTCATTTCCTGTAAAAGGTAACAAAAAGTGGTTGACTGACAAAATGTTTATCATAATATCAAATATATTTGGTCAGTGAGCATATCTTTTACAGGAAATGAGATATATTGGCTTAAAGTTGTAAGTTTAGTATTTGGTCCTTTCATTGTGTAGAAAGTATCCATCTGAGTTTCAGCAACATTGCCATTCATGAAAGGGGAACTATTAATTTCTGTAAAAGTTAGTTTTGAATATCGAGATCACACTTTTCTATTGGGTGTAGCTTTTCTATACTTCTCAGAAAACCTTTACTACAGTTTAAACCAACTTTGTAAGATACATTTTATATCCTTCTTTTTTTCAGAATGAAACGACGACAATTCCAACAACAACAACTAAATCTTCATACATTCCTGAATTCCGTGCRGTCCTTTCTCCTTTCTGGTTCCTTGCCGTTGCAATCGGAGTTGCTGCAATTTGTTTCGGACTCAATGTAACACTTTGTGTCGTCTATTGTTTCTATTGTCGAAGGAAAAAACGAAGTCAAAAAGCACATATATCCACTGTTAAAGGTGGACCAACATTACATGCTTATAATCCACAAATATGATCATTTATAGTATAATTATTCTTCGCTATTCTAGTCATTGTTATTATTTTGTCTCCGGTGTTTCTGCTCATTTTTTATGTAAATATTCTTATATCTAACGGGTGTCACTTTTCTTTTTTCTCTTTTTTCTCCCACTTATTTTTTCTCCGTTTTCCACTTTCCGTTCTACCTCAACTTGCCTTATATGTTATTCATACGCAACTTAATTTTCGAATAAATTGTTTTCAAATCTCTTTTTTTGTAGACAAAACGAAATGGAGAAATGAAAACACCAAAACGAGTTGATTCCATTTTGGAAAATGGCAAAAGGGACCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>498 454 33 15</canonical_bands>
                <polymorphic_bands>531 454 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTATTGGGTGTAGCTTTTCTA</pcr_primer_p1>
		<pcr_primer_p2>AACAATAGACGACACAAAGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTATTGGGTGTAGCTTTTCTATACTTCTCAGAAAACCTTTACTACAGTTTAAACCAACTTTGTAAGATACATTTTATATCCTTCTTTTTTTCAGAATGAAACGACGACAATTCCAACAACAACAACTAAATCTTCATACATTCCTGAATTCCGTGCAGTCCTTTCTCCTTTCTGGTTCCTTGCCGTTGCAATCGGAGTTGCTGCAATTTGTTTCGGACTCAATGTAACACTTTGTGTCGTCTATTGTT</canonical_amplicon>
		<polymorphic_amplicon>TTCTATTGGGTGTAGCTTTTCTATACTTCTCAGAAAACCTTTACTACAGTTTAAACCAACTTTGTAAGATACATTTTATATCCTTCTTTTTTTCAGAATGAAACGACGACAATTCCAACAACAACAACTAAATCTTCATACATTCCTGAATTCCGTGCRGTCCTTTCTCCTTTCTGGTTCCTTGCCGTTGCAATCGGAGTTGCTGCAATTTGTTTCGGACTCAATGTAACACTTTGTGTCGTCTATTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14975</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>580075</contig_pos>
        <strand>+</strand>
        <context>TAATTAGCCA[A/G]CGAGCACCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCACCAACTAACCTTCTCGAATTCGGCGTTATTACTGTAATAATTAGCCA</left_flank>
        <right_flank>CGAGCACCACAAGAATCCCACTTGATCGGTGTAACGATAAATTCCTTGAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGTTTCAATCTGCTTATCGTAGTTTCCTTCGTAGATATCCACTCTATTCAGCCATTCGCCCACATTGTGAGGATTTTGTCGCAAAAGAACACTGTTCATCAACTCATTTTTACGCTCCATGAGATTTTGATATCTTTAAAAAACAATATTTGTTAGTGGAAATAAAACTTGTTAATACCTCTGGAACATCCATTCTAAATCGACTTCTCCCTCTTGGTCTCCGCTTTGTTCTATCTGTCCCATCATAATCGACACTTCTCCTTCTTCAAAAGCTGCGTAAGCATCATACACCTGTGCGAAATCACGAACGGTGGATACTTTTGCAATGGCCTCTTCATAGACATCTCGAGCCTAGGAAATGTTTTGATATATATTAAAAATTGAAAGAAAAAACATTAGGGAAGACCCTAGTTTCCGAGACTGTAAAGTCGCCCACCTTCATAATTTTCACCAACTAACCTTCTCGAATTCGGCGTTATTACTGTAATAATTAGCCAGCGAGCACCACAAGAATCCCACTTGATCGGTGTAACGATAAATTCCTTGACGAATGATAGCATCAACGTTTAATGAAAAAATTTTGACAGGGTTCTCCGATATCAAAGTACATAGCTTTGTCCAGAGTTGATGAGAAGTTTGACCCTTTTCCGAAACGTTTTGATCTTGGTTCACAAGAGTCGTCAACTCCTTTGCGGCTTCGTCGATTTGGTCCCTTTCGATCAAGTATTCAACGTAATCTTCGCGAGCTTTAGGATTTATTTTGAGGTATCTTCTATAAACACGGATAGTTGTTTCCGGAAGATCGTGGCTGGTCAGAAAGTCGATGTACATAGGCCAAATTCTCATGTGCTGAGTCACCGGAAGAGATCGAAGTGCTCTATCAAAAACTCGTCGAGTCTCAGTTATCAAACCTCGTTTTATCATTACTTCGCAGTAGCAAATCCAGATCCGAGGCATCTGTATTCAGAATAAAATAGAAGAAAATAAATTAAAGAAAA</canonical>
            <polymorphic>AATGTTTCAATCTGCTTATCGTAGTTTCCTTCGTAGATATCCACTCTATTCAGCCATTCGCCCACATTGTGAGGATTTTGTCGCAAAAGAACACTGTTCATCAACTCATTTTTACGCTCCATGAGATTTTGATATCTTTAAAAAACAATATTTGTTAGTGGAAATAAAACTTGTTAATACCTCTGGAACATCCATTCTAAATCGACTTCTCCCTCTTGGTCTCCGCTTTGTTCTATCTGTCCCATCATAATCGACACTTCTCCTTCTTCAAAAGCTGCGTAAGCATCATACACCTGTGCGAAATCACGAACGGTGGATACTTTTGCAATGGCCTCTTCATAGACATCTCGAGCCTAGGAAATGTTTTGATATATATTAAAAATTGAAAGAAAAAACATTAGGGAAGACCCTAGTTTCCGAGACTGTAAAGTCGCCCACCTTCATAATTTTCACCAACTAACCTTCTCGAATTCGGCGTTATTACTGTAATAATTAGCCARCGAGCACCACAAGAATCCCACTTGATCGGTGTAACGATAAATTCCTTGACGAATGATAGCATCAACGTTTAATGAAAAAATTTTGACAGGGTTCTCCGATATCAAAGTACATAGCTTTGTCCAGAGTTGATGAGAAGTTTGACCCTTTTCCGAAACGTTTTGATCTTGGTTCACAAGAGTCGTCAACTCCTTTGCGGCTTCGTCGATTTGGTCCCTTTCGATCAAGTATTCAACGTAATCTTCGCGAGCTTTAGGATTTATTTTGAGGTATCTTCTATAAACACGGATAGTTGTTTCCGGAAGATCGTGGCTGGTCAGAAAGTCGATGTACATAGGCCAAATTCTCATGTGCTGAGTCACCGGAAGAGATCGAAGTGCTCTATCAAAAACTCGTCGAGTCTCAGTTATCAAACCTCGTTTTATCATTACTTCGCAGTAGCAAATCCAGATCCGAGGCATCTGTATTCAGAATAAAATAGAAGAAAATAAATTAAAGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 254 244 4</canonical_bands>
                <polymorphic_bands>746 254</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTCATAATTTTCACCAACTAA</pcr_primer_p1>
		<pcr_primer_p2>GACTCTTGTGAACCAAGATCA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CCTTCATAATTTTCACCAACTAACCTTCTCGAATTCGGCGTTATTACTGTAATAATTAGCCAGCGAGCACCACAAGAATCCCACTTGATCGGTGTAACGATAAATTCCTTGACGAATGATAGCATCAACGTTTAATGAAAAAATTTTGACAGGGTTCTCCGATATCAAAGTACATAGCTTTGTCCAGAGTTGATGAGAAGTTTGACCCTTTTCCGAAACGTTTTGATCTTGGTTCACAAGAGTC</canonical_amplicon>
		<polymorphic_amplicon>CCTTCATAATTTTCACCAACTAACCTTCTCGAATTCGGCGTTATTACTGTAATAATTAGCCARCGAGCACCACAAGAATCCCACTTGATCGGTGTAACGATAAATTCCTTGACGAATGATAGCATCAACGTTTAATGAAAAAATTTTGACAGGGTTCTCCGATATCAAAGTACATAGCTTTGTCCAGAGTTGATGAGAAGTTTGACCCTTTTCCGAAACGTTTTGATCTTGGTTCACAAGAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14976</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>581786</contig_pos>
        <strand>+</strand>
        <context>ATGTACGGTG[C/T]ACTTCTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTATTTAGTTCAAAGAGCCAAGCAATGTTTGGATTTTGCATGTACGGTG</left_flank>
        <right_flank>ACTTCTTTCATTTGATATGTGTAACAATCTACAATCGTACCCTTCCCACT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAATTCGAAAAATTAGTTTGGTCGTAAGATAAAATGTGTGCAGACTGCTTGTGTCTGCAGCTGCACACCGTATATTGTGAAAAATACGTTGGCTTGTCTAATTTCGAGATGAGATAAATAAAAAGAAACGGTCTTCGAAGCTTTAAAATTGAGACATTCAGAAACCAATTCTACTGAAAATAAAAAATGTCTTCTTTCCGCCAGTTTGTGTGGGATCCAGTGCTTCTGATAAGCCAAATGACATGTCTGCAAACATTTTTTTATGCAGCACAAATGTCGGTCATGTTGCTATGTAGTTTCTACGGATACGAACCGCTTATCTCTTCGATTTTCTCTACACAGGTTGTGTTTCGAAAAAATTAAAAATCACAACCTCAATAGTTGCAGACACAACGCTCGATGGCGCTTATTCAATTAATTGCTTCGGTTGGAGTCTCATTTGCTCTTTCTTATTTAGTTCAAAGAGCCAAGCAATGTTTGGATTTTGCATGTACGGTGTACTTCTTTCATTTGATATGTGTAACAATCTACAATCGTACCCTTCCCACTCAATTCACATGGTAAGCAGGGATGTGCGCGAAATTTTTATTTTACGAATTTCGTAAAACGTAAAATTTTACGAATTACAAGCTCGTAAATTCGTAAAATTCGTAAAATCCGTAAAAAACTGAATCTTCAATTGAAATGGAAAAAACTGCAGTTTTATTATTAAGCAATTGGCAAATGGTCCGCAAATGTTGAAAATCGTAGAACCGAATGCTTCTATGGGGTTACAACAATTTTCTAATCTTTTTCCTTAAAAAATGCTAAATTGTGAAAAAAAAGCATCCAAATTTGGGAAAAAATTCTTTGAAAATGAAGCGAATTCGTGATTTAAAATGAGATGTGACCATAAAATCAACTCAAAACAAGATCAAGAACATAACAATGAACCGGAATACTGTCAATTCTGAACAAAAATGGTGAAACACTCATCCAGTTTTTACGAATTTTACGGAT</canonical>
            <polymorphic>CGAATTCGAAAAATTAGTTTGGTCGTAAGATAAAATGTGTGCAGACTGCTTGTGTCTGCAGCTGCACACCGTATATTGTGAAAAATACGTTGGCTTGTCTAATTTCGAGATGAGATAAATAAAAAGAAACGGTCTTCGAAGCTTTAAAATTGAGACATTCAGAAACCAATTCTACTGAAAATAAAAAATGTCTTCTTTCCGCCAGTTTGTGTGGGATCCAGTGCTTCTGATAAGCCAAATGACATGTCTGCAAACATTTTTTTATGCAGCACAAATGTCGGTCATGTTGCTATGTAGTTTCTACGGATACGAACCGCTTATCTCTTCGATTTTCTCTACACAGGTTGTGTTTCGAAAAAATTAAAAATCACAACCTCAATAGTTGCAGACACAACGCTCGATGGCGCTTATTCAATTAATTGCTTCGGTTGGAGTCTCATTTGCTCTTTCTTATTTAGTTCAAAGAGCCAAGCAATGTTTGGATTTTGCATGTACGGTGYACTTCTTTCATTTGATATGTGTAACAATCTACAATCGTACCCTTCCCACTCAATTCACATGGTAAGCAGGGATGTGCGCGAAATTTTTATTTTACGAATTTCGTAAAACGTAAAATTTTACGAATTACAAGCTCGTAAATTCGTAAAATTCGTAAAATCCGTAAAAAACTGAATCTTCAATTGAAATGGAAAAAACTGCAGTTTTATTATTAAGCAATTGGCAAATGGTCCGCAAATGTTGAAAATCGTAGAACCGAATGCTTCTATGGGGTTACAACAATTTTCTAATCTTTTTCCTTAAAAAATGCTAAATTGTGAAAAAAAAGCATCCAAATTTGGGAAAAAATTCTTTGAAAATGAAGCGAATTCGTGATTTAAAATGAGATGTGACCATAAAATCAACTCAAAACAAGATCAAGAACATAACAATGAACCGGAATACTGTCAATTCTGAACAAAAATGGTGAAACACTCATCCAGTTTTTACGAATTTTACGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>493 462 38 7</canonical_bands>
                <polymorphic_bands>493 462 45</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTCTTCGATTTTCTCTACACA</pcr_primer_p1>
		<pcr_primer_p2>CTGCTTACCATGTGAATTGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTCTTCGATTTTCTCTACACAGGTTGTGTTTCGAAAAAATTAAAAATCACAACCTCAATAGTTGCAGACACAACGCTCGATGGCGCTTATTCAATTAATTGCTTCGGTTGGAGTCTCATTTGCTCTTTCTTATTTAGTTCAAAGAGCCAAGCAATGTTTGGATTTTGCATGTACGGTGTACTTCTTTCATTTGATATGTGTAACAATCTACAATCGTACCCTTCCCACTCAATTCACATGGTAAGCAG</canonical_amplicon>
		<polymorphic_amplicon>ATCTCTTCGATTTTCTCTACACAGGTTGTGTTTCGAAAAAATTAAAAATCACAACCTCAATAGTTGCAGACACAACGCTCGATGGCGCTTATTCAATTAATTGCTTCGGTTGGAGTCTCATTTGCTCTTTCTTATTTAGTTCAAAGAGCCAAGCAATGTTTGGATTTTGCATGTACGGTGYACTTCTTTCATTTGATATGTGTAACAATCTACAATCGTACCCTTCCCACTCAATTCACATGGTAAGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14977</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>615331</contig_pos>
        <strand>+</strand>
        <context>ACTTCCACTG[C/T]AGTCTTCCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACGTGGATGAATGTCATGTCTCCACTCCAAACCTTCAACACTTCCACTG</left_flank>
        <right_flank>AGTCTTCCTCATGATGAGGTGAGTTGTATTTTAAAAAAAGTTTCATTTTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTGGTATTCAGATCGATTCGACAACATCTTCTGAGTTAAAACATTACAGAGATGCTACGATCTTGCCACCAAACACCGCTCTTCTCTTCGTCATCTGGAAATGACCACTCCTGATGGGCAAAACGCATACGCAAATCTTAACACTGCCACATCATCTATGCGATTCACCTTCAATCAAGCAGAAGAGCCCGCACCCAGCGAGGAGGCTGAGCATAACAGTAGTCACACTTTTGTGTACACCGTCTTCCATGCTTTCCTGAATGTTCACACAATCAAAAATGTCACACTGGAAATCGGAAGTAAATTCGATCCAAACCTTGCTCTTCAGAAGGCGTACCAAATCGCTCTGCCTTACTCCGGAAGACCTATTCTCGAGAGGTTGACTATTGAATTCGGAAACAGTTTGAAATCGATGAACGAAGCTGATATGAAACAAGTACTTCTTCGCCACGTGGATGAATGTCATGTCTCCACTCCAAACCTTCAACACTTCCACTGTAGTCTTCCTCATGATGAGGTGAGTTGTATTTTAAAAAAAGTTTCATTTTATCATTCATTGAATTTATAGATCGACTTATCTCAAGAGTTTTTGACACTGCTGAATGAGCCAGTCACCAAGTCTCGAAGGAATCCGAAAAGCCAGCCATACAAATCGACGATTTCGCTTCGGACAGTCAGTTGTCAATGAATTTGAACCTTCAACAGAATGTACAATGTATTATGATCTTCCCATTTGATACTCAGTTTAACTGTACATATTTAATAACTAGTATATCATACTGTAATATTTTCACTGTTCGATAATACGTGAATACAAAAAATAAAGCAACCATTTTAATGAAATCAGAAAATTCACATTTCTCAAGATACCAAATCTAAAATGTATGCTATAAATGAACAGCTGAGATGAGATACGACATTTTCAAAAAGAAATGAGCAATCACAATTTCCGGATCATCACTGATTGTCATATCACTTTCACTTTCAAGTCTGAAAATA</canonical>
            <polymorphic>GTTGGTATTCAGATCGATTCGACAACATCTTCTGAGTTAAAACATTACAGAGATGCTACGATCTTGCCACCAAACACCGCTCTTCTCTTCGTCATCTGGAAATGACCACTCCTGATGGGCAAAACGCATACGCAAATCTTAACACTGCCACATCATCTATGCGATTCACCTTCAATCAAGCAGAAGAGCCCGCACCCAGCGAGGAGGCTGAGCATAACAGTAGTCACACTTTTGTGTACACCGTCTTCCATGCTTTCCTGAATGTTCACACAATCAAAAATGTCACACTGGAAATCGGAAGTAAATTCGATCCAAACCTTGCTCTTCAGAAGGCGTACCAAATCGCTCTGCCTTACTCCGGAAGACCTATTCTCGAGAGGTTGACTATTGAATTCGGAAACAGTTTGAAATCGATGAACGAAGCTGATATGAAACAAGTACTTCTTCGCCACGTGGATGAATGTCATGTCTCCACTCCAAACCTTCAACACTTCCACTGYAGTCTTCCTCATGATGAGGTGAGTTGTATTTTAAAAAAAGTTTCATTTTATCATTCATTGAATTTATAGATCGACTTATCTCAAGAGTTTTTGACACTGCTGAATGAGCCAGTCACCAAGTCTCGAAGGAATCCGAAAAGCCAGCCATACAAATCGACGATTTCGCTTCGGACAGTCAGTTGTCAATGAATTTGAACCTTCAACAGAATGTACAATGTATTATGATCTTCCCATTTGATACTCAGTTTAACTGTACATATTTAATAACTAGTATATCATACTGTAATATTTTCACTGTTCGATAATACGTGAATACAAAAAATAAAGCAACCATTTTAATGAAATCAGAAAATTCACATTTCTCAAGATACCAAATCTAAAATGTATGCTATAAATGAACAGCTGAGATGAGATACGACATTTTCAAAAAGAAATGAGCAATCACAATTTCCGGATCATCACTGATTGTCATATCACTTTCACTTTCAAGTCTGAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>219 204 176 160 96 78 30 23 14</canonical_bands>
                <polymorphic_bands>272 219 204 160 78 30 23 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTACTCCGGAAGACCTATTCT</pcr_primer_p1>
		<pcr_primer_p2>CAGTGTCAAAAACTCTTGAGATAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTTACTCCGGAAGACCTATTCTCGAGAGGTTGACTATTGAATTCGGAAACAGTTTGAAATCGATGAACGAAGCTGATATGAAACAAGTACTTCTTCGCCACGTGGATGAATGTCATGTCTCCACTCCAAACCTTCAACACTTCCACTGTAGTCTTCCTCATGATGAGGTGAGTTGTATTTTAAAAAAAGTTTCATTTTATCATTCATTGAATTTATAGATCGACTTATCTCAAGAGTTTTTGACACTG</canonical_amplicon>
		<polymorphic_amplicon>CTTACTCCGGAAGACCTATTCTCGAGAGGTTGACTATTGAATTCGGAAACAGTTTGAAATCGATGAACGAAGCTGATATGAAACAAGTACTTCTTCGCCACGTGGATGAATGTCATGTCTCCACTCCAAACCTTCAACACTTCCACTGYAGTCTTCCTCATGATGAGGTGAGTTGTATTTTAAAAAAAGTTTCATTTTATCATTCATTGAATTTATAGATCGACTTATCTCAAGAGTTTTTGACACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14978</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>615365</contig_pos>
        <strand>+</strand>
        <context>TTGTATTTTA[A/G]AAAAAGTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAACACTTCCACTGTAGTCTTCCTCATGATGAGGTGAGTTGTATTTTA</left_flank>
        <right_flank>AAAAAGTTTCATTTTATCATTCATTGAATTTATAGATCGACTTATCTCAA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTAAAACATTACAGAGATGCTACGATCTTGCCACCAAACACCGCTCTTCTCTTCGTCATCTGGAAATGACCACTCCTGATGGGCAAAACGCATACGCAAATCTTAACACTGCCACATCATCTATGCGATTCACCTTCAATCAAGCAGAAGAGCCCGCACCCAGCGAGGAGGCTGAGCATAACAGTAGTCACACTTTTGTGTACACCGTCTTCCATGCTTTCCTGAATGTTCACACAATCAAAAATGTCACACTGGAAATCGGAAGTAAATTCGATCCAAACCTTGCTCTTCAGAAGGCGTACCAAATCGCTCTGCCTTACTCCGGAAGACCTATTCTCGAGAGGTTGACTATTGAATTCGGAAACAGTTTGAAATCGATGAACGAAGCTGATATGAAACAAGTACTTCTTCGCCACGTGGATGAATGTCATGTCTCCACTCCAAACCTTCAACACTTCCACTGTAGTCTTCCTCATGATGAGGTGAGTTGTATTTTAAAAAAAGTTTCATTTTATCATTCATTGAATTTATAGATCGACTTATCTCAAGAGTTTTTGACACTGCTGAATGAGCCAGTCACCAAGTCTCGAAGGAATCCGAAAAGCCAGCCATACAAATCGACGATTTCGCTTCGGACAGTCAGTTGTCAATGAATTTGAACCTTCAACAGAATGTACAATGTATTATGATCTTCCCATTTGATACTCAGTTTAACTGTACATATTTAATAACTAGTATATCATACTGTAATATTTTCACTGTTCGATAATACGTGAATACAAAAAATAAAGCAACCATTTTAATGAAATCAGAAAATTCACATTTCTCAAGATACCAAATCTAAAATGTATGCTATAAATGAACAGCTGAGATGAGATACGACATTTTCAAAAAGAAATGAGCAATCACAATTTCCGGATCATCACTGATTGTCATATCACTTTCACTTTCAAGTCTGAAAATATGACCACCGGAAGACAAAAGCTCTTACAGCTTTT</canonical>
            <polymorphic>AGTTAAAACATTACAGAGATGCTACGATCTTGCCACCAAACACCGCTCTTCTCTTCGTCATCTGGAAATGACCACTCCTGATGGGCAAAACGCATACGCAAATCTTAACACTGCCACATCATCTATGCGATTCACCTTCAATCAAGCAGAAGAGCCCGCACCCAGCGAGGAGGCTGAGCATAACAGTAGTCACACTTTTGTGTACACCGTCTTCCATGCTTTCCTGAATGTTCACACAATCAAAAATGTCACACTGGAAATCGGAAGTAAATTCGATCCAAACCTTGCTCTTCAGAAGGCGTACCAAATCGCTCTGCCTTACTCCGGAAGACCTATTCTCGAGAGGTTGACTATTGAATTCGGAAACAGTTTGAAATCGATGAACGAAGCTGATATGAAACAAGTACTTCTTCGCCACGTGGATGAATGTCATGTCTCCACTCCAAACCTTCAACACTTCCACTGTAGTCTTCCTCATGATGAGGTGAGTTGTATTTTARAAAAAGTTTCATTTTATCATTCATTGAATTTATAGATCGACTTATCTCAAGAGTTTTTGACACTGCTGAATGAGCCAGTCACCAAGTCTCGAAGGAATCCGAAAAGCCAGCCATACAAATCGACGATTTCGCTTCGGACAGTCAGTTGTCAATGAATTTGAACCTTCAACAGAATGTACAATGTATTATGATCTTCCCATTTGATACTCAGTTTAACTGTACATATTTAATAACTAGTATATCATACTGTAATATTTTCACTGTTCGATAATACGTGAATACAAAAAATAAAGCAACCATTTTAATGAAATCAGAAAATTCACATTTCTCAAGATACCAAATCTAAAATGTATGCTATAAATGAACAGCTGAGATGAGATACGACATTTTCAAAAAGAAATGAGCAATCACAATTTCCGGATCATCACTGATTGTCATATCACTTTCACTTTCAAGTCTGAAAATATGACCACCGGAAGACAAAAGCTCTTACAGCTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>392 216 198 102 75 14 3</canonical_bands>
                <polymorphic_bands>608 198 102 75 14 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTACTCCGGAAGACCTATTCT</pcr_primer_p1>
		<pcr_primer_p2>CAGTGTCAAAAACTCTTGAGATAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTTACTCCGGAAGACCTATTCTCGAGAGGTTGACTATTGAATTCGGAAACAGTTTGAAATCGATGAACGAAGCTGATATGAAACAAGTACTTCTTCGCCACGTGGATGAATGTCATGTCTCCACTCCAAACCTTCAACACTTCCACTGTAGTCTTCCTCATGATGAGGTGAGTTGTATTTTAAAAAAAGTTTCATTTTATCATTCATTGAATTTATAGATCGACTTATCTCAAGAGTTTTTGACACTG</canonical_amplicon>
		<polymorphic_amplicon>CTTACTCCGGAAGACCTATTCTCGAGAGGTTGACTATTGAATTCGGAAACAGTTTGAAATCGATGAACGAAGCTGATATGAAACAAGTACTTCTTCGCCACGTGGATGAATGTCATGTCTCCACTCCAAACCTTCAACACTTCCACTGTAGTCTTCCTCATGATGAGGTGAGTTGTATTTTARAAAAAGTTTCATTTTATCATTCATTGAATTTATAGATCGACTTATCTCAAGAGTTTTTGACACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14979</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>615703</contig_pos>
        <strand></strand>
        <context>CTCAAGATAC[C/A]AAATCTAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATAAAGCAACCATTTTAATGAAATCAGAAAATTCACATTTCTCAAGATAC</left_flank>
        <right_flank>AAATCTAAAATGTATGCTATAAATGAACAGCTGAGATGAGATACGACATT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGAGAGGTTGACTATTGAATTCGGAAACAGTTTGAAATCGATGAACGAAGCTGATATGAAACAAGTACTTCTTCGCCACGTGGATGAATGTCATGTCTCCACTCCAAACCTTCAACACTTCCACTGTAGTCTTCCTCATGATGAGGTGAGTTGTATTTTAAAAAAAGTTTCATTTTATCATTCATTGAATTTATAGATCGACTTATCTCAAGAGTTTTTGACACTGCTGAATGAGCCAGTCACCAAGTCTCGAAGGAATCCGAAAAGCCAGCCATACAAATCGACGATTTCGCTTCGGACAGTCAGTTGTCAATGAATTTGAACCTTCAACAGAATGTACAATGTATTATGATCTTCCCATTTGATACTCAGTTTAACTGTACATATTTAATAACTAGTATATCATACTGTAATATTTTCACTGTTCGATAATACGTGAATACAAAAAATAAAGCAACCATTTTAATGAAATCAGAAAATTCACATTTCTCAAGATACCAAATCTAAAATGTATGCTATAAATGAACAGCTGAGATGAGATACGACATTTTCAAAAAGAAATGAGCAATCACAATTTCCGGATCATCACTGATTGTCATATCACTTTCACTTTCAAGTCTGAAAATATGACCACCGGAAGACAAAAGCTCTTACAGCTTTTAATGACGTATTAGTGATATAGATCTCTCTTTTCCTCTTCTTCTTTTCTAGAGAAACTCGAAACGACTGCTCTGTTACACTAATAACAGCTGACTCAGTTTTGAAGGCAACCGGTCAGTACTTCCTTCCATTCACACTTTACGTCTTATTGAATGAAATGGCTGACTCTGTAGCATCAATTGGTAATCGGTATATTGATAGTAATGGTAGGTTATCAACTATTTTCGAATAAATATTGAAATGCAAACCATTCAGATACCGATATGCATTTTCTCCGAACCTGGGCGGTTCGTAGATGTCAGCATACGGATTGGGATGTATGTGAAAGGATTCGATTGT</canonical>
            <polymorphic>TCGAGAGGTTGACTATTGAATTCGGAAACAGTTTGAAATCGATGAACGAAGCTGATATGAAACAAGTACTTCTTCGCCACGTGGATGAATGTCATGTCTCCACTCCAAACCTTCAACACTTCCACTGTAGTCTTCCTCATGATGAGGTGAGTTGTATTTTAAAAAAAGTTTCATTTTATCATTCATTGAATTTATAGATCGACTTATCTCAAGAGTTTTTGACACTGCTGAATGAGCCAGTCACCAAGTCTCGAAGGAATCCGAAAAGCCAGCCATACAAATCGACGATTTCGCTTCGGACAGTCAGTTGTCAATGAATTTGAACCTTCAACAGAATGTACAATGTATTATGATCTTCCCATTTGATACTCAGTTTAACTGTACATATTTAATAACTAGTATATCATACTGTAATATTTTCACTGTTCGATAATACGTGAATACAAAAAATAAAGCAACCATTTTAATGAAATCAGAAAATTCACATTTCTCAAGATACMAAATCTAAAATGTATGCTATAAATGAACAGCTGAGATGAGATACGACATTTTCAAAAAGAAATGAGCAATCACAATTTCCGGATCATCACTGATTGTCATATCACTTTCACTTTCAAGTCTGAAAATATGACCACCGGAAGACAAAAGCTCTTACAGCTTTTAATGACGTATTAGTGATATAGATCTCTCTTTTCCTCTTCTTCTTTTCTAGAGAAACTCGAAACGACTGCTCTGTTACACTAATAACAGCTGACTCAGTTTTGAAGGCAACCGGTCAGTACTTCCTTCCATTCACACTTTACGTCTTATTGAATGAAATGGCTGACTCTGTAGCATCAATTGGTAATCGGTATATTGATAGTAATGGTAGGTTATCAACTATTTTCGAATAAATATTGAAATGCAAACCATTCAGATACCGATATGCATTTTCTCCGAACCTGGGCGGTTCGTAGATGTCAGCATACGGATTGGGATGTATGTGAAAGGATTCGATTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGAACCTTCAACAGAATGTA</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTTTTGAAAATGTCGTATC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATTTGAACCTTCAACAGAATGTACAATGTATTATGATCTTCCCATTTGATACTCAGTTTAACTGTACATATTTAATAACTAGTATATCATACTGTAATATTTTCACTGTTCGATAATACGTGAATACAAAAAATAAAGCAACCATTTTAATGAAATCAGAAAATTCACATTTCTCAAGATACCAAATCTAAAATGTATGCTATAAATGAACAGCTGAGATGAGATACGACATTTTCAAAAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTGAACCTTCAACAGAATGTACAATGTATTATGATCTTCCCATTTGATACTCAGTTTAACTGTACATATTTAATAACTAGTATATCATACTGTAATATTTTCACTGTTCGATAATACGTGAATACAAAAAATAAAGCAACCATTTTAATGAAATCAGAAAATTCACATTTCTCAAGATACMAAATCTAAAATGTATGCTATAAATGAACAGCTGAGATGAGATACGACATTTTCAAAAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14988</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>738492</contig_pos>
        <strand>+</strand>
        <context>TTGAAATTCA[C/G]AAGAGCCTAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTACCGAGAGAAAAGGGCAACAAAAGGAGGAAAACTGAAATTGAAATTCA</left_flank>
        <right_flank>AAGAGCCTAGTTCCGGTTTTGGAGGGGAGCAAAGAATATTGAAAAATAGC</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTCGATTATTTTTATAAAATTATAAAATTATCCATGAAGCTAGAGCTCTAAGGAAAAATTCTATCAAATTTTTTTCGTATTTTCTTGAAAAAAAGAAATCTGCGAAAATTCAAGTTTCAAGATTTCAAAACAGCTACTAAAAAAATAGACCGCCCAAGCTTTTCATCTATATATGGATTATCTTTATTCTCCACAAATCTGGGGCAAAAAAGTGTCAAAAGCAGAGATTGGTGTCTCCTTTTTCTTTTAAATCTGAGAATCCTCTTCTCCAGATTCTTCTTCTTCTTCTCCTTTTAAAAAAGGAGGGACTACCCATTTCCCGGAAGCCGAATGAGACAAATTGTGCATCGACAATGATTGTGTGTCTATGTTGCACTTCTGTGTTGCCAAAATGACGAAATTTCGTGGATAAAATGGAAATTTGTTTCAAGATAAAATACAAATATTTACCGAGAGAAAAGGGCAACAAAAGGAGGAAAACTGAAATTGAAATTCACAAGAGCCTAGTTCCGGTTTTGGAGGGGAGCAAAGAATATTGAAAAATAGCTCGAGTACAAAAAATTTTGAAGGCGGGGACGGTGATTATGATGTGACGGTGTATAATAATCGGTGTTCACACAGCGTTGACTACCATGCCGTTTTCTTAAACTACACGGACGCGCCACCATAGCTCAGCTGGTAGCGACGCGGCACTTCCAACGGTGGGTCCAAAAAATTCGAAAATATTGCATTTCAAAAAAACCGTGAAATTTGAGCTCAATTATCTCTGTTCCAAATGGAGAGATATAAAGATGTGAACTGATAAAATGTTGAAAATTTTATCACTATTATTTTGTTAGTTGACTACTTGTTGATATTTTTTATAGGAATCGGGATAAATTATAATAGGTCCTATAGGTCAATGTTGGTAGTGCCCCTTATTTTACAAGACACGGTAGTTACGGTAGGTTTACGGTTTTTGAAAAAAATTAAAGTTATCAGTAATATTTAAGCTGAG</canonical>
            <polymorphic>AAATTCGATTATTTTTATAAAATTATAAAATTATCCATGAAGCTAGAGCTCTAAGGAAAAATTCTATCAAATTTTTTTCGTATTTTCTTGAAAAAAAGAAATCTGCGAAAATTCAAGTTTCAAGATTTCAAAACAGCTACTAAAAAAATAGACCGCCCAAGCTTTTCATCTATATATGGATTATCTTTATTCTCCACAAATCTGGGGCAAAAAAGTGTCAAAAGCAGAGATTGGTGTCTCCTTTTTCTTTTAAATCTGAGAATCCTCTTCTCCAGATTCTTCTTCTTCTTCTCCTTTTAAAAAAGGAGGGACTACCCATTTCCCGGAAGCCGAATGAGACAAATTGTGCATCGACAATGATTGTGTGTCTATGTTGCACTTCTGTGTTGCCAAAATGACGAAATTTCGTGGATAAAATGGAAATTTGTTTCAAGATAAAATACAAATATTTACCGAGAGAAAAGGGCAACAAAAGGAGGAAAACTGAAATTGAAATTCASAAGAGCCTAGTTCCGGTTTTGGAGGGGAGCAAAGAATATTGAAAAATAGCTCGAGTACAAAAAATTTTGAAGGCGGGGACGGTGATTATGATGTGACGGTGTATAATAATCGGTGTTCACACAGCGTTGACTACCATGCCGTTTTCTTAAACTACACGGACGCGCCACCATAGCTCAGCTGGTAGCGACGCGGCACTTCCAACGGTGGGTCCAAAAAATTCGAAAATATTGCATTTCAAAAAAACCGTGAAATTTGAGCTCAATTATCTCTGTTCCAAATGGAGAGATATAAAGATGTGAACTGATAAAATGTTGAAAATTTTATCACTATTATTTTGTTAGTTGACTACTTGTTGATATTTTTTATAGGAATCGGGATAAATTATAATAGGTCCTATAGGTCAATGTTGGTAGTGCCCCTTATTTTACAAGACACGGTAGTTACGGTAGGTTTACGGTTTTTGAAAAAAATTAAAGTTATCAGTAATATTTAAGCTGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>196 112 89 89 85 65 50 42 35 28 28 24 21 19 19 17 14 12 11 11 11 8 6 4 2 2</canonical_bands>
                <polymorphic_bands>196 174 112 89 65 50 42 35 28 28 24 21 19 19 17 14 12 11 11 11 8 6 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGTGTCTATGTTGCACTTCTG</pcr_primer_p1>
		<pcr_primer_p2>CGATTATTATACACCGTCACATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGTGTCTATGTTGCACTTCTGTGTTGCCAAAATGACGAAATTTCGTGGATAAAATGGAAATTTGTTTCAAGATAAAATACAAATATTTACCGAGAGAAAAGGGCAACAAAAGGAGGAAAACTGAAATTGAAATTCACAAGAGCCTAGTTCCGGTTTTGGAGGGGAGCAAAGAATATTGAAAAATAGCTCGAGTACAAAAAATTTTGAAGGCGGGGACGGTGATTATGATGTGACGGTGTATAATAATCG</canonical_amplicon>
		<polymorphic_amplicon>GTGTGTCTATGTTGCACTTCTGTGTTGCCAAAATGACGAAATTTCGTGGATAAAATGGAAATTTGTTTCAAGATAAAATACAAATATTTACCGAGAGAAAAGGGCAACAAAAGGAGGAAAACTGAAATTGAAATTCASAAGAGCCTAGTTCCGGTTTTGGAGGGGAGCAAAGAATATTGAAAAATAGCTCGAGTACAAAAAATTTTGAAGGCGGGGACGGTGATTATGATGTGACGGTGTATAATAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14990</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>897959</contig_pos>
        <strand></strand>
        <context>ATTTTTCCAA[T/C]AATTCCTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAGAAAGGCTGAAAATCGCAGGTTTTCGCTGAAATTCCCAATTTTTCCAA</left_flank>
        <right_flank>AATTCCTTCATGAAATCTTCATTTTAATGCCATTTACTCACTCCGGAAAT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAAACTCATATTGCAAAAGTTAGGCCACCATGCTAAAATGGCTTAAAACACACACCATGTTAACATCAGATCATTTTCAGGTCAAAAAGTTTGGTGGCCTAGAAAATTCATGTTGGAAAAATTAGGCCACCAGGTCAGATGGCCTAGAAAAAAAAAGATGAGATACGATTTTTTACAAGTAATTCCGGCTGTTAATAACAATTGTTTGTCGATAATTTGTCGACAAATGCCCCCTTCGACAAATTTATTGACAAAAAAAACGACAATTTATCGATAATTTGTCAACAAAATTTTGTCGATAAATTACTTTCGACAAATTTACCGATAATTTGTCAACAATTTATCGACAAAATTTTATCGTTTTTTATCGACAAATTTATCGATAATTTGTCAGGTAAATTTGTCGACAAAATCGGAAAATCTTTGTCGATAAGGCACACTGCCGGAAAGAAAGGCTGAAAATCGCAGGTTTTCGCTGAAATTCCCAATTTTTCCAATAATTCCTTCATGAAATCTTCATTTTAATGCCATTTACTCACTCCGGAAATGCCTAAAACTTTCTCTCCATCAAAACTGTTTCTTTAAAATTTCGAAATCCACTCGACAGCGTTTCTCTTTTACCCCATCAAAATCTGTCCTTCCACTTATAGGAAAAATAGAGTGTAATAATGAGTCAGTGTCAGAAATTTTCCTTTTTCTTCTTGATGCCGTCATCTGAATCCTCCTCCATCGAATCGATTCAAATCGTGCTGCCGTGACCAGTTGGTTGCCTAATACGAATCGAATGGGAGAGAGACAGGTTCTTTTTGTGGGTTATCCTCCTCTTTTCTTCTGGCGAGACAACCACCGCTACTTCCTGCGGTTTTTCTACGTTCGTCGTCTCTTATTCTTTTCGCTTTAGTGGTAGTAGCCATCCTTCTTCTCATTCCTTTTCAACCCAGACCAAAGTATCAAAAATCATGTGTTCTTAAAGGAATTCTCTTTGTTTTTTTTGTAAT</canonical>
            <polymorphic>AGAAAACTCATATTGCAAAAGTTAGGCCACCATGCTAAAATGGCTTAAAACACACACCATGTTAACATCAGATCATTTTCAGGTCAAAAAGTTTGGTGGCCTAGAAAATTCATGTTGGAAAAATTAGGCCACCAGGTCAGATGGCCTAGAAAAAAAAAGATGAGATACGATTTTTTACAAGTAATTCCGGCTGTTAATAACAATTGTTTGTCGATAATTTGTCGACAAATGCCCCCTTCGACAAATTTATTGACAAAAAAAACGACAATTTATCGATAATTTGTCAACAAAATTTTGTCGATAAATTACTTTCGACAAATTTACCGATAATTTGTCAACAATTTATCGACAAAATTTTATCGTTTTTTATCGACAAATTTATCGATAATTTGTCAGGTAAATTTGTCGACAAAATCGGAAAATCTTTGTCGATAAGGCACACTGCCGGAAAGAAAGGCTGAAAATCGCAGGTTTTCGCTGAAATTCCCAATTTTTCCAAYAATTCCTTCATGAAATCTTCATTTTAATGCCATTTACTCACTCCGGAAATGCCTAAAACTTTCTCTCCATCAAAACTGTTTCTTTAAAATTTCGAAATCCACTCGACAGCGTTTCTCTTTTACCCCATCAAAATCTGTCCTTCCACTTATAGGAAAAATAGAGTGTAATAATGAGTCAGTGTCAGAAATTTTCCTTTTTCTTCTTGATGCCGTCATCTGAATCCTCCTCCATCGAATCGATTCAAATCGTGCTGCCGTGACCAGTTGGTTGCCTAATACGAATCGAATGGGAGAGAGACAGGTTCTTTTTGTGGGTTATCCTCCTCTTTTCTTCTGGCGAGACAACCACCGCTACTTCCTGCGGTTTTTCTACGTTCGTCGTCTCTTATTCTTTTCGCTTTAGTGGTAGTAGCCATCCTTCTTCTCATTCCTTTTCAACCCAGACCAAAGTATCAAAAATCATGTGTTCTTAAAGGAATTCTCTTTGTTTTTTTTGTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAGAAAGGCTGAAAATC</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTTCTGACACTGACTCAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGAAAGAAAGGCTGAAAATCGCAGGTTTTCGCTGAAATTCCCAATTTTTCCAATAATTCCTTCATGAAATCTTCATTTTAATGCCATTTACTCACTCCGGAAATGCCTAAAACTTTCTCTCCATCAAAACTGTTTCTTTAAAATTTCGAAATCCACTCGACAGCGTTTCTCTTTTACCCCATCAAAATCTGTCCTTCCACTTATAGGAAAAATAGAGTGTAATAATGAGTCAGTGTCAGAAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>GGAAAGAAAGGCTGAAAATCGCAGGTTTTCGCTGAAATTCCCAATTTTTCCAAYAATTCCTTCATGAAATCTTCATTTTAATGCCATTTACTCACTCCGGAAATGCCTAAAACTTTCTCTCCATCAAAACTGTTTCTTTAAAATTTCGAAATCCACTCGACAGCGTTTCTCTTTTACCCCATCAAAATCTGTCCTTCCACTTATAGGAAAAATAGAGTGTAATAATGAGTCAGTGTCAGAAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb14999</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>73101</contig_pos>
        <strand>+</strand>
        <context>STCMATTGAA[A/C]TTCAAAGTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTGATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTGCTCCATTGAA</left_flank>
        <right_flank>TTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATATGAAATCACCT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGGGTCTAAATAAGATTTTCAGCCATTTGTTAGTTCATATGGAGATTACTGTAGTGAACGATGAACTAGAAATGTTTTTTTTTTAAGTCTTAATTGGGACCCGAATTTCGACGGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTGCTCCATTGAAATTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATATGAAATCACCTGATTTTTTCCATTAATTTTTGATTATTTCTGAAAAAAAAAATTTCAGAAAAAAATTTATTTTCAGATTTTTTTTTGAAAATGCGACTCTACATTTTGTCCTACTTAAATGATAATTCCAGTGAATACAGTAATTTGTCTGGAAATTTGTCTGAAAATTCTGGAAATTCTGGAAATTCCACAGGAACTGAAAATCTACTAATGAAATTTGACAATTTCGAACAATTCCTGAATTTCTATAATTTTTTGGGGTTCCTGTTGATTTTTGCGGGTCTTTATGGTTACAAAATTTACAAAGAACAGTTTTTTGAATTTTCGAATTTTCGAAAATTCCATATTTTCATGTATTGCTGTATTTTCTCAATGGCTTTGATTATTTTCTACATTTTATACCCTATTGTTGAAGGTTTTTGGAAATGGATTACTGTATTTTTTGGTCTTGTAGTTCTGTT</canonical>
            <polymorphic>AGGGGTCTAAATAAGATTTTCAGCCATTTGTTAGTTCATATGGAGATTACTGTAGTGAACGATGAACTAGAAATGTTTTTTTTTTAAGTCTTAATTGGGACCCGAATTTCGACGGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTGCTCCATTGAAMTTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATATGAAATCACCTGATTTTTTCCATTAATTTTTGATTATTTCTGAAAAAAAAAATTTCAGAAAAAAATTTATTTTCAGATTTTTTTTTGAAAATGCGACTCTACATTTTGTCCTACTTAAATGATAATTCCAGTGAATACAGTAATTTGTCTGGAAATTTGTCTGAAAATTCTGGAAATTCTGGAAATTCCACAGGAACTGAAAATCTACTAATGAAATTTGACAATTTCGAACAATTCCTGAATTTCTATAATTTTTTGGGGTTCCTGTTGATTTTTGCGGGTCTTTATGGTTACAAAATTTACAAAGAACAGTTTTTTGAATTTTCGAATTTTCGAAAATTCCATATTTTCATGTATTGCTGTATTTTCTCAATGGCTTTGATTATTTTCTACATTTTATACCCTATTGTTGAAGGTTTTTGGAAATGGATTACTGTATTTTTTGGTCTTGTAGTTCTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>173 133 124 104 90 88 80 56 31 26 23 13 12 11 10 9 9 8</canonical_bands>
                <polymorphic_bands>173 133 124 104 99 90 80 56 31 26 23 13 12 10 9 9 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>173 124 92 74 68 60 54 48 47 31 26 23 18 17 14 13 12 12 12 11 10 10 9 9 9 8 8 8</canonical_bands>
                <polymorphic_bands>173 124 92 85 68 60 54 48 47 31 26 23 18 17 14 13 12 12 12 10 10 9 9 9 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTACCGTAATCCTTGATTT</pcr_primer_p1>
		<pcr_primer_p2>AATTACTGTATTCACTGGAATTATCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTTACCGTAATCCTTGATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTGCTCCATTGAAATTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATATGAAATCACCTGATTTTTTCCATTAATTTTTGATTATTTCTGAAAAAAAAAATTTCAGAAAAAAATTTATTTTCAGATTTTTTTTTGAAAATGCGACTCTACATTTTGTCCTACTTAAATGATAATTCCAGTGAATACAGTAATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTACCGTAATCCTTGATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTGCTCCATTGAAMTTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATATGAAATCACCTGATTTTTTCCATTAATTTTTGATTATTTCTGAAAAAAAAAATTTCAGAAAAAAATTTATTTTCAGATTTTTTTTTGAAAATGCGACTCTACATTTTGTCCTACTTAAATGATAATTCCAGTGAATACAGTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15000</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>73094</contig_pos>
        <strand>+</strand>
        <context>TCATGTGSTC[A/C]ATTGAAMTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGTAATCCTTGATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTGCTC</left_flank>
        <right_flank>ATTGAAATTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATATGAA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATTTTAGGGGTCTAAATAAGATTTTCAGCCATTTGTTAGTTCATATGGAGATTACTGTAGTGAACGATGAACTAGAAATGTTTTTTTTTTAAGTCTTAATTGGGACCCGAATTTCGACGGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTGCTCCATTGAAATTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATATGAAATCACCTGATTTTTTCCATTAATTTTTGATTATTTCTGAAAAAAAAAATTTCAGAAAAAAATTTATTTTCAGATTTTTTTTTGAAAATGCGACTCTACATTTTGTCCTACTTAAATGATAATTCCAGTGAATACAGTAATTTGTCTGGAAATTTGTCTGAAAATTCTGGAAATTCTGGAAATTCCACAGGAACTGAAAATCTACTAATGAAATTTGACAATTTCGAACAATTCCTGAATTTCTATAATTTTTTGGGGTTCCTGTTGATTTTTGCGGGTCTTTATGGTTACAAAATTTACAAAGAACAGTTTTTTGAATTTTCGAATTTTCGAAAATTCCATATTTTCATGTATTGCTGTATTTTCTCAATGGCTTTGATTATTTTCTACATTTTATACCCTATTGTTGAAGGTTTTTGGAAATGGATTACTGTATTTTTTGGTCTTGTAG</canonical>
            <polymorphic>GGATTTTAGGGGTCTAAATAAGATTTTCAGCCATTTGTTAGTTCATATGGAGATTACTGTAGTGAACGATGAACTAGAAATGTTTTTTTTTTAAGTCTTAATTGGGACCCGAATTTCGACGGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTGCTCMATTGAAATTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATATGAAATCACCTGATTTTTTCCATTAATTTTTGATTATTTCTGAAAAAAAAAATTTCAGAAAAAAATTTATTTTCAGATTTTTTTTTGAAAATGCGACTCTACATTTTGTCCTACTTAAATGATAATTCCAGTGAATACAGTAATTTGTCTGGAAATTTGTCTGAAAATTCTGGAAATTCTGGAAATTCCACAGGAACTGAAAATCTACTAATGAAATTTGACAATTTCGAACAATTCCTGAATTTCTATAATTTTTTGGGGTTCCTGTTGATTTTTGCGGGTCTTTATGGTTACAAAATTTACAAAGAACAGTTTTTTGAATTTTCGAATTTTCGAAAATTCCATATTTTCATGTATTGCTGTATTTTCTCAATGGCTTTGATTATTTTCTACATTTTATACCCTATTGTTGAAGGTTTTTGGAAATGGATTACTGTATTTTTTGGTCTTGTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTACCGTAATCCTTGATTT</pcr_primer_p1>
		<pcr_primer_p2>AATTACTGTATTCACTGGAATTATCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTTACCGTAATCCTTGATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTGCTCCATTGAAATTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATATGAAATCACCTGATTTTTTCCATTAATTTTTGATTATTTCTGAAAAAAAAAATTTCAGAAAAAAATTTATTTTCAGATTTTTTTTTGAAAATGCGACTCTACATTTTGTCCTACTTAAATGATAATTCCAGTGAATACAGTAATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTACCGTAATCCTTGATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTGCTCMATTGAAATTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATATGAAATCACCTGATTTTTTCCATTAATTTTTGATTATTTCTGAAAAAAAAAATTTCAGAAAAAAATTTATTTTCAGATTTTTTTTTGAAAATGCGACTCTACATTTTGTCCTACTTAAATGATAATTCCAGTGAATACAGTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15001</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>73091</contig_pos>
        <strand>+</strand>
        <context>TCGTCATGTG[C/G]TCMATTGAAM</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TACCGTAATCCTTGATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTG</left_flank>
        <right_flank>TCCATTGAAATTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATAT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGGGATTTTAGGGGTCTAAATAAGATTTTCAGCCATTTGTTAGTTCATATGGAGATTACTGTAGTGAACGATGAACTAGAAATGTTTTTTTTTTAAGTCTTAATTGGGACCCGAATTTCGACGGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTGCTCCATTGAAATTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATATGAAATCACCTGATTTTTTCCATTAATTTTTGATTATTTCTGAAAAAAAAAATTTCAGAAAAAAATTTATTTTCAGATTTTTTTTTGAAAATGCGACTCTACATTTTGTCCTACTTAAATGATAATTCCAGTGAATACAGTAATTTGTCTGGAAATTTGTCTGAAAATTCTGGAAATTCTGGAAATTCCACAGGAACTGAAAATCTACTAATGAAATTTGACAATTTCGAACAATTCCTGAATTTCTATAATTTTTTGGGGTTCCTGTTGATTTTTGCGGGTCTTTATGGTTACAAAATTTACAAAGAACAGTTTTTTGAATTTTCGAATTTTCGAAAATTCCATATTTTCATGTATTGCTGTATTTTCTCAATGGCTTTGATTATTTTCTACATTTTATACCCTATTGTTGAAGGTTTTTGGAAATGGATTACTGTATTTTTTGGTCTTG</canonical>
            <polymorphic>TAGGGATTTTAGGGGTCTAAATAAGATTTTCAGCCATTTGTTAGTTCATATGGAGATTACTGTAGTGAACGATGAACTAGAAATGTTTTTTTTTTAAGTCTTAATTGGGACCCGAATTTCGACGGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTGSTCCATTGAAATTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATATGAAATCACCTGATTTTTTCCATTAATTTTTGATTATTTCTGAAAAAAAAAATTTCAGAAAAAAATTTATTTTCAGATTTTTTTTTGAAAATGCGACTCTACATTTTGTCCTACTTAAATGATAATTCCAGTGAATACAGTAATTTGTCTGGAAATTTGTCTGAAAATTCTGGAAATTCTGGAAATTCCACAGGAACTGAAAATCTACTAATGAAATTTGACAATTTCGAACAATTCCTGAATTTCTATAATTTTTTGGGGTTCCTGTTGATTTTTGCGGGTCTTTATGGTTACAAAATTTACAAAGAACAGTTTTTTGAATTTTCGAATTTTCGAAAATTCCATATTTTCATGTATTGCTGTATTTTCTCAATGGCTTTGATTATTTTCTACATTTTATACCCTATTGTTGAAGGTTTTTGGAAATGGATTACTGTATTTTTTGGTCTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTACCGTAATCCTTGATTT</pcr_primer_p1>
		<pcr_primer_p2>AATTACTGTATTCACTGGAATTATCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTTACCGTAATCCTTGATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTGCTCCATTGAAATTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATATGAAATCACCTGATTTTTTCCATTAATTTTTGATTATTTCTGAAAAAAAAAATTTCAGAAAAAAATTTATTTTCAGATTTTTTTTTGAAAATGCGACTCTACATTTTGTCCTACTTAAATGATAATTCCAGTGAATACAGTAATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTACCGTAATCCTTGATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTGSTCCATTGAAATTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATATGAAATCACCTGATTTTTTCCATTAATTTTTGATTATTTCTGAAAAAAAAAATTTCAGAAAAAAATTTATTTTCAGATTTTTTTTTGAAAATGCGACTCTACATTTTGTCCTACTTAAATGATAATTCCAGTGAATACAGTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15002</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>112095</contig_pos>
        <strand>+</strand>
        <context>TGCGCCACTG[A/G]AAAATTGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCACCCACTCGAATGGTTCCCTCGATTTCACGAGCGAATTTGCGCCACTG</left_flank>
        <right_flank>AAAATTGAATTTTTGGAATTTTGATATTAGAAAAATTAGGAGCATTTTGA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGCAAAACTAGCCGTGTTTATACTTATTTTGAAGCTCTCAACGTTCTAAATTAAAACATAGTGTTTTCCAAGCGTGATTACTGTAGGTTTTGCGGCTTCAAGGCATGCTTATATATTCATTTTGAAACTCCTAACGCCCCCAAATTCGACTTTTCCATCATTTCAGCTTACCTTGTCGTAGAGCTCAAACACTCAATATTATCTCCTCCACACATGTCTACAATCCATGGAAGTCGATTGTAGGGTTCCCAATCTTCGCTCAAAGCCTTCCAATTCTCAGAATTCAAGTGTAAAACTTCAGATTTCAGCCGCTGAATCACAAAATCGACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATAAAAAACTAGGGACGGATAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCTTCGGCGCAGTTCACAGCACCCACTCGAATGGTTCCCTCGATTTCACGAGCGAATTTGCGCCACTGGAAAATTGAATTTTTGGAATTTTGATATTAGAAAAATTAGGAGCATTTTGAGCTAAAAATGATAAAAATTGGACCAGAATTGACAAAGTTATAGTTATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTCTAACTCAGAGTCTCGG</canonical>
            <polymorphic>GAAGCAAAACTAGCCGTGTTTATACTTATTTTGAAGCTCTCAACGTTCTAAATTAAAACATAGTGTTTTCCAAGCGTGATTACTGTAGGTTTTGCGGCTTCAAGGCATGCTTATATATTCATTTTGAAACTCCTAACGCCCCCAAATTCGACTTTTCCATCATTTCAGCTTACCTTGTCGTAGAGCTCAAACACTCAATATTATCTCCTCCACACATGTCTACAATCCATGGAAGTCGATTGTAGGGTTCCCAATCTTCGCTCAAAGCCTTCCAATTCTCAGAATTCAAGTGTAAAACTTCAGATTTCAGCCGCTGAATCACAAAATCGACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATAAAAAACTAGGGACGGATAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCTTCGGCGCAGTTCACAGCACCCACTCGAATGGTTCCCTCGATTTCACGAGCGAATTTGCGCCACTGRAAAATTGAATTTTTGGAATTTTGATATTAGAAAAATTAGGAGCATTTTGAGCTAAAAATGATAAAAATTGGACCAGAATTGACAAAGTTATAGTTATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTCTAACTCAGAGTCTCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCATAAGTTCGACGTCAC</pcr_primer_p1>
		<pcr_primer_p2>TGGTCCAATTTTTATCATTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATAAAAAACTAGGGACGGATAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCTTCGGCGCAGTTCACAGCACCCACTCGAATGGTTCCCTCGATTTCACGAGCGAATTTGCGCCACTGGAAAATTGAATTTTTGGAATTTTGATATTAGAAAAATTAGGAGCATTTTGAGCTAAAAATGATAAAAATTGGACCA</canonical_amplicon>
		<polymorphic_amplicon>GACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATAAAAAACTAGGGACGGATAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCTTCGGCGCAGTTCACAGCACCCACTCGAATGGTTCCCTCGATTTCACGAGCGAATTTGCGCCACTGRAAAATTGAATTTTTGGAATTTTGATATTAGAAAAATTAGGAGCATTTTGAGCTAAAAATGATAAAAATTGGACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15003</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>111990</contig_pos>
        <strand>+</strand>
        <context>CTAGGGACGG[A/G]TAGGCGTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCACGATGCCCTTGATAGAATTCGCCGGTTGGATAAAAAACTAGGGACGG</left_flank>
        <right_flank>TAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCTTCGGCGCAGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTAGGTGTTGAGAGCTTCAAAATGAGTATAATCATGACCCATCTTGCTCGATTTTGATTTTTCGCCCGGGATACTGTAGTTTTCGCGGCAAGACCCAAATTTGAAGCAAAACTAGCCGTGTTTATACTTATTTTGAAGCTCTCAACGTTCTAAATTAAAACATAGTGTTTTCCAAGCGTGATTACTGTAGGTTTTGCGGCTTCAAGGCATGCTTATATATTCATTTTGAAACTCCTAACGCCCCCAAATTCGACTTTTCCATCATTTCAGCTTACCTTGTCGTAGAGCTCAAACACTCAATATTATCTCCTCCACACATGTCTACAATCCATGGAAGTCGATTGTAGGGTTCCCAATCTTCGCTCAAAGCCTTCCAATTCTCAGAATTCAAGTGTAAAACTTCAGATTTCAGCCGCTGAATCACAAAATCGACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATAAAAAACTAGGGACGGATAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCTTCGGCGCAGTTCACAGCACCCACTCGAATGGTTCCCTCGATTTCACGAGCGAATTTGCGCCACTGGAAAATTGAATTTTTGGAATTTTGATATTAGAAAAATTAGGAGCATTTTGAGCTAAAAATGATAAAAATTGGACCAGAATTGACAAAGTTATAGTTATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCT</canonical>
            <polymorphic>ATTTTAGGTGTTGAGAGCTTCAAAATGAGTATAATCATGACCCATCTTGCTCGATTTTGATTTTTCGCCCGGGATACTGTAGTTTTCGCGGCAAGACCCAAATTTGAAGCAAAACTAGCCGTGTTTATACTTATTTTGAAGCTCTCAACGTTCTAAATTAAAACATAGTGTTTTCCAAGCGTGATTACTGTAGGTTTTGCGGCTTCAAGGCATGCTTATATATTCATTTTGAAACTCCTAACGCCCCCAAATTCGACTTTTCCATCATTTCAGCTTACCTTGTCGTAGAGCTCAAACACTCAATATTATCTCCTCCACACATGTCTACAATCCATGGAAGTCGATTGTAGGGTTCCCAATCTTCGCTCAAAGCCTTCCAATTCTCAGAATTCAAGTGTAAAACTTCAGATTTCAGCCGCTGAATCACAAAATCGACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATAAAAAACTAGGGACGGRTAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCTTCGGCGCAGTTCACAGCACCCACTCGAATGGTTCCCTCGATTTCACGAGCGAATTTGCGCCACTGGAAAATTGAATTTTTGGAATTTTGATATTAGAAAAATTAGGAGCATTTTGAGCTAAAAATGATAAAAATTGGACCAGAATTGACAAAGTTATAGTTATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCATAAGTTCGACGTCAC</pcr_primer_p1>
		<pcr_primer_p2>TGGTCCAATTTTTATCATTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATAAAAAACTAGGGACGGATAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCTTCGGCGCAGTTCACAGCACCCACTCGAATGGTTCCCTCGATTTCACGAGCGAATTTGCGCCACTGGAAAATTGAATTTTTGGAATTTTGATATTAGAAAAATTAGGAGCATTTTGAGCTAAAAATGATAAAAATTGGACCA</canonical_amplicon>
		<polymorphic_amplicon>GACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATAAAAAACTAGGGACGGRTAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCTTCGGCGCAGTTCACAGCACCCACTCGAATGGTTCCCTCGATTTCACGAGCGAATTTGCGCCACTGGAAAATTGAATTTTTGGAATTTTGATATTAGAAAAATTAGGAGCATTTTGAGCTAAAAATGATAAAAATTGGACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15004</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>111975</contig_pos>
        <strand>+</strand>
        <context>CGGTTGGATA[A/G]AAAACTAGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATA</left_flank>
        <right_flank>AAAACTAGGGACGGATAGGCGTTGACTCGTTGAGATTGACACAGTTGAGG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGTTAATTTTCAGATTTTAGGTGTTGAGAGCTTCAAAATGAGTATAATCATGACCCATCTTGCTCGATTTTGATTTTTCGCCCGGGATACTGTAGTTTTCGCGGCAAGACCCAAATTTGAAGCAAAACTAGCCGTGTTTATACTTATTTTGAAGCTCTCAACGTTCTAAATTAAAACATAGTGTTTTCCAAGCGTGATTACTGTAGGTTTTGCGGCTTCAAGGCATGCTTATATATTCATTTTGAAACTCCTAACGCCCCCAAATTCGACTTTTCCATCATTTCAGCTTACCTTGTCGTAGAGCTCAAACACTCAATATTATCTCCTCCACACATGTCTACAATCCATGGAAGTCGATTGTAGGGTTCCCAATCTTCGCTCAAAGCCTTCCAATTCTCAGAATTCAAGTGTAAAACTTCAGATTTCAGCCGCTGAATCACAAAATCGACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATAAAAAACTAGGGACGGATAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCTTCGGCGCAGTTCACAGCACCCACTCGAATGGTTCCCTCGATTTCACGAGCGAATTTGCGCCACTGGAAAATTGAATTTTTGGAATTTTGATATTAGAAAAATTAGGAGCATTTTGAGCTAAAAATGATAAAAATTGGACCAGAATTGACAAAGTTATAGTTATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGT</canonical>
            <polymorphic>AATGTTAATTTTCAGATTTTAGGTGTTGAGAGCTTCAAAATGAGTATAATCATGACCCATCTTGCTCGATTTTGATTTTTCGCCCGGGATACTGTAGTTTTCGCGGCAAGACCCAAATTTGAAGCAAAACTAGCCGTGTTTATACTTATTTTGAAGCTCTCAACGTTCTAAATTAAAACATAGTGTTTTCCAAGCGTGATTACTGTAGGTTTTGCGGCTTCAAGGCATGCTTATATATTCATTTTGAAACTCCTAACGCCCCCAAATTCGACTTTTCCATCATTTCAGCTTACCTTGTCGTAGAGCTCAAACACTCAATATTATCTCCTCCACACATGTCTACAATCCATGGAAGTCGATTGTAGGGTTCCCAATCTTCGCTCAAAGCCTTCCAATTCTCAGAATTCAAGTGTAAAACTTCAGATTTCAGCCGCTGAATCACAAAATCGACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATARAAAACTAGGGACGGATAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCTTCGGCGCAGTTCACAGCACCCACTCGAATGGTTCCCTCGATTTCACGAGCGAATTTGCGCCACTGGAAAATTGAATTTTTGGAATTTTGATATTAGAAAAATTAGGAGCATTTTGAGCTAAAAATGATAAAAATTGGACCAGAATTGACAAAGTTATAGTTATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCAAACACTCAATATTATCTCC</pcr_primer_p1>
		<pcr_primer_p2>AGATCCTCAACTGTGTCAATCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTCAAACACTCAATATTATCTCCTCCACACATGTCTACAATCCATGGAAGTCGATTGTAGGGTTCCCAATCTTCGCTCAAAGCCTTCCAATTCTCAGAATTCAAGTGTAAAACTTCAGATTTCAGCCGCTGAATCACAAAATCGACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATAAAAAACTAGGGACGGATAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCT</canonical_amplicon>
		<polymorphic_amplicon>GCTCAAACACTCAATATTATCTCCTCCACACATGTCTACAATCCATGGAAGTCGATTGTAGGGTTCCCAATCTTCGCTCAAAGCCTTCCAATTCTCAGAATTCAAGTGTAAAACTTCAGATTTCAGCCGCTGAATCACAAAATCGACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATARAAAACTAGGGACGGATAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15005</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>195460</contig_pos>
        <strand>+</strand>
        <context>CCGGAGAAAA[C/T]GAGCTGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGAAAAACCAACATTTTTCGTTTTTTTATTCATTAAAAACCGGAGAAAA</left_flank>
        <right_flank>GAGCTGAAAATATTTTCTACTGCGTTAATGATTACTGTAGAAAGTTTTGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGAAAAATATTTTTTATCCCAAAAATTTCAAATTCCCGCCTTGCCGCTACCGCTAATTCCAATTTTTATTATCTCAAATGATCTATTTATATTCCCACCCCATCTCTCTTTTACATGCATGCACCCTCCCGATTTATCGATTTTTTCCCGGTCAATTTAGGCCAATATTCCACTTTTTTTCTTGAAATTTATCGATTTTTTTTTCGCTCTTTTCAAAAATAAAAACGTCGAGATTTCAATTTTTAATTTGTTTTTTTCAACAATTAAATTTAACCCATTTTCATCTCTTTTCGCCAGATGATCTCTGAAAAATTGATTCAAAACCGGAGAAAAAGAGCTGAAAATATTTTCATTTTCCGCCTAAAACATCACTGTAGATAAACTTTGAGGCATGCGCCTTTAATACAGTACCCAGACGATTTTTTAGGGTTTTGTTGGGATTTTGGAACGAAAAACCAACATTTTTCGTTTTTTTATTCATTAAAAACCGGAGAAAATGAGCTGAAAATATTTTCTACTGCGTTAATGATTACTGTAGAAAGTTTTGAAGCATGCGCCTTCAATACAGTACCCAGAGGGTTTTTGTTTTGTTTTTGAGGAAACTTCCTCGCAAAAAAGGAATGAAAACTTTTACAAAGTCATTTTCTAGTAAAAAACAGCAATTTTCATTTAATTTTATCATTAAAAAGCGAAAAAAATGACCTGAAAACAGTTTCTATTGCATAAAAATCTACTGTAGAAAGTTTCGAAGCATGCGCCTTTAATACAGTACCCGGCTTTTTTGAGTGTTTTCGATAGATTTTCTGACGAAAAATCGGAAAAAAAACGCACAAAAAACGTATTTTTATTTATTAAAAACCGAGAAAAATGGCCTGAAAATGCATATTTTAGACTAAATATTCAGTTTTGAAGAACGCGCCTTCAAATACAGTAATAAAATGAATAAAATTGATTTTTTATGCAAAAAAAAGATAAAATTATGCAAATCGATGTAGAAA</canonical>
            <polymorphic>GGAGAAAAATATTTTTTATCCCAAAAATTTCAAATTCCCGCCTTGCCGCTACCGCTAATTCCAATTTTTATTATCTCAAATGATCTATTTATATTCCCACCCCATCTCTCTTTTACATGCATGCACCCTCCCGATTTATCGATTTTTTCCCGGTCAATTTAGGCCAATATTCCACTTTTTTTCTTGAAATTTATCGATTTTTTTTTCGCTCTTTTCAAAAATAAAAACGTCGAGATTTCAATTTTTAATTTGTTTTTTTCAACAATTAAATTTAACCCATTTTCATCTCTTTTCGCCAGATGATCTCTGAAAAATTGATTCAAAACCGGAGAAAAAGAGCTGAAAATATTTTCATTTTCCGCCTAAAACATCACTGTAGATAAACTTTGAGGCATGCGCCTTTAATACAGTACCCAGACGATTTTTTAGGGTTTTGTTGGGATTTTGGAACGAAAAACCAACATTTTTCGTTTTTTTATTCATTAAAAACCGGAGAAAAYGAGCTGAAAATATTTTCTACTGCGTTAATGATTACTGTAGAAAGTTTTGAAGCATGCGCCTTCAATACAGTACCCAGAGGGTTTTTGTTTTGTTTTTGAGGAAACTTCCTCGCAAAAAAGGAATGAAAACTTTTACAAAGTCATTTTCTAGTAAAAAACAGCAATTTTCATTTAATTTTATCATTAAAAAGCGAAAAAAATGACCTGAAAACAGTTTCTATTGCATAAAAATCTACTGTAGAAAGTTTCGAAGCATGCGCCTTTAATACAGTACCCGGCTTTTTTGAGTGTTTTCGATAGATTTTCTGACGAAAAATCGGAAAAAAAACGCACAAAAAACGTATTTTTATTTATTAAAAACCGAGAAAAATGGCCTGAAAATGCATATTTTAGACTAAATATTCAGTTTTGAAGAACGCGCCTTCAAATACAGTAATAAAATGAATAAAATTGATTTTTTATGCAAAAAAAAGATAAAATTATGCAAATCGATGTAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCCTAAAACATCACTGTAGATA</pcr_primer_p1>
		<pcr_primer_p2>GAAGTTTCCTCAAAAACAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGCCTAAAACATCACTGTAGATAAACTTTGAGGCATGCGCCTTTAATACAGTACCCAGACGATTTTTTAGGGTTTTGTTGGGATTTTGGAACGAAAAACCAACATTTTTCGTTTTTTTATTCATTAAAAACCGGAGAAAATGAGCTGAAAATATTTTCTACTGCGTTAATGATTACTGTAGAAAGTTTTGAAGCATGCGCCTTCAATACAGTACCCAGAGGGTTTTTGTTTTGTTTTTGAGGAAACTTC</canonical_amplicon>
		<polymorphic_amplicon>CGCCTAAAACATCACTGTAGATAAACTTTGAGGCATGCGCCTTTAATACAGTACCCAGACGATTTTTTAGGGTTTTGTTGGGATTTTGGAACGAAAAACCAACATTTTTCGTTTTTTTATTCATTAAAAACCGGAGAAAAYGAGCTGAAAATATTTTCTACTGCGTTAATGATTACTGTAGAAAGTTTTGAAGCATGCGCCTTCAATACAGTACCCAGAGGGTTTTTGTTTTGTTTTTGAGGAAACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15006</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>195433</contig_pos>
        <strand>+</strand>
        <context>ATTTTTCGTW[C/T]TTTTATTCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTAGGGTTTTGTTGGGATTTTGGAACGAAAAACCAACATTTTTCGTT</left_flank>
        <right_flank>TTTTATTCATTAAAAACCGGAGAAAATGAGCTGAAAATATTTTCTACTGC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAAAAAACGAAGAAAACAATTTTTAGGAGAAAAATATTTTTTATCCCAAAAATTTCAAATTCCCGCCTTGCCGCTACCGCTAATTCCAATTTTTATTATCTCAAATGATCTATTTATATTCCCACCCCATCTCTCTTTTACATGCATGCACCCTCCCGATTTATCGATTTTTTCCCGGTCAATTTAGGCCAATATTCCACTTTTTTTCTTGAAATTTATCGATTTTTTTTTCGCTCTTTTCAAAAATAAAAACGTCGAGATTTCAATTTTTAATTTGTTTTTTTCAACAATTAAATTTAACCCATTTTCATCTCTTTTCGCCAGATGATCTCTGAAAAATTGATTCAAAACCGGAGAAAAAGAGCTGAAAATATTTTCATTTTCCGCCTAAAACATCACTGTAGATAAACTTTGAGGCATGCGCCTTTAATACAGTACCCAGACGATTTTTTAGGGTTTTGTTGGGATTTTGGAACGAAAAACCAACATTTTTCGTTTTTTTATTCATTAAAAACCGGAGAAAATGAGCTGAAAATATTTTCTACTGCGTTAATGATTACTGTAGAAAGTTTTGAAGCATGCGCCTTCAATACAGTACCCAGAGGGTTTTTGTTTTGTTTTTGAGGAAACTTCCTCGCAAAAAAGGAATGAAAACTTTTACAAAGTCATTTTCTAGTAAAAAACAGCAATTTTCATTTAATTTTATCATTAAAAAGCGAAAAAAATGACCTGAAAACAGTTTCTATTGCATAAAAATCTACTGTAGAAAGTTTCGAAGCATGCGCCTTTAATACAGTACCCGGCTTTTTTGAGTGTTTTCGATAGATTTTCTGACGAAAAATCGGAAAAAAAACGCACAAAAAACGTATTTTTATTTATTAAAAACCGAGAAAAATGGCCTGAAAATGCATATTTTAGACTAAATATTCAGTTTTGAAGAACGCGCCTTCAAATACAGTAATAAAATGAATAAAATTGATTTTTTATGCAAAAAAAAG</canonical>
            <polymorphic>TATAAAAAACGAAGAAAACAATTTTTAGGAGAAAAATATTTTTTATCCCAAAAATTTCAAATTCCCGCCTTGCCGCTACCGCTAATTCCAATTTTTATTATCTCAAATGATCTATTTATATTCCCACCCCATCTCTCTTTTACATGCATGCACCCTCCCGATTTATCGATTTTTTCCCGGTCAATTTAGGCCAATATTCCACTTTTTTTCTTGAAATTTATCGATTTTTTTTTCGCTCTTTTCAAAAATAAAAACGTCGAGATTTCAATTTTTAATTTGTTTTTTTCAACAATTAAATTTAACCCATTTTCATCTCTTTTCGCCAGATGATCTCTGAAAAATTGATTCAAAACCGGAGAAAAAGAGCTGAAAATATTTTCATTTTCCGCCTAAAACATCACTGTAGATAAACTTTGAGGCATGCGCCTTTAATACAGTACCCAGACGATTTTTTAGGGTTTTGTTGGGATTTTGGAACGAAAAACCAACATTTTTCGTTYTTTTATTCATTAAAAACCGGAGAAAATGAGCTGAAAATATTTTCTACTGCGTTAATGATTACTGTAGAAAGTTTTGAAGCATGCGCCTTCAATACAGTACCCAGAGGGTTTTTGTTTTGTTTTTGAGGAAACTTCCTCGCAAAAAAGGAATGAAAACTTTTACAAAGTCATTTTCTAGTAAAAAACAGCAATTTTCATTTAATTTTATCATTAAAAAGCGAAAAAAATGACCTGAAAACAGTTTCTATTGCATAAAAATCTACTGTAGAAAGTTTCGAAGCATGCGCCTTTAATACAGTACCCGGCTTTTTTGAGTGTTTTCGATAGATTTTCTGACGAAAAATCGGAAAAAAAACGCACAAAAAACGTATTTTTATTTATTAAAAACCGAGAAAAATGGCCTGAAAATGCATATTTTAGACTAAATATTCAGTTTTGAAGAACGCGCCTTCAAATACAGTAATAAAATGAATAAAATTGATTTTTTATGCAAAAAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCTGAAAAATTGATTCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TGCTTCAAAACTTTCTACAGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTCTGAAAAATTGATTCAAAACCGGAGAAAAAGAGCTGAAAATATTTTCATTTTCCGCCTAAAACATCACTGTAGATAAACTTTGAGGCATGCGCCTTTAATACAGTACCCAGACGATTTTTTAGGGTTTTGTTGGGATTTTGGAACGAAAAACCAACATTTTTCGTTTTTTTATTCATTAAAAACCGGAGAAAATGAGCTGAAAATATTTTCTACTGCGTTAATGATTACTGTAGAAAGTTTTGAAGCA</canonical_amplicon>
		<polymorphic_amplicon>TCTCTGAAAAATTGATTCAAAACCGGAGAAAAAGAGCTGAAAATATTTTCATTTTCCGCCTAAAACATCACTGTAGATAAACTTTGAGGCATGCGCCTTTAATACAGTACCCAGACGATTTTTTAGGGTTTTGTTGGGATTTTGGAACGAAAAACCAACATTTTTCGTTYTTTTATTCATTAAAAACCGGAGAAAATGAGCTGAAAATATTTTCTACTGCGTTAATGATTACTGTAGAAAGTTTTGAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15007</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>195432</contig_pos>
        <strand>+</strand>
        <context>CATTTTTCGT[A/T]YTTTTATTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTTAGGGTTTTGTTGGGATTTTGGAACGAAAAACCAACATTTTTCGT</left_flank>
        <right_flank>TTTTTATTCATTAAAAACCGGAGAAAATGAGCTGAAAATATTTTCTACTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATAAAAAACGAAGAAAACAATTTTTAGGAGAAAAATATTTTTTATCCCAAAAATTTCAAATTCCCGCCTTGCCGCTACCGCTAATTCCAATTTTTATTATCTCAAATGATCTATTTATATTCCCACCCCATCTCTCTTTTACATGCATGCACCCTCCCGATTTATCGATTTTTTCCCGGTCAATTTAGGCCAATATTCCACTTTTTTTCTTGAAATTTATCGATTTTTTTTTCGCTCTTTTCAAAAATAAAAACGTCGAGATTTCAATTTTTAATTTGTTTTTTTCAACAATTAAATTTAACCCATTTTCATCTCTTTTCGCCAGATGATCTCTGAAAAATTGATTCAAAACCGGAGAAAAAGAGCTGAAAATATTTTCATTTTCCGCCTAAAACATCACTGTAGATAAACTTTGAGGCATGCGCCTTTAATACAGTACCCAGACGATTTTTTAGGGTTTTGTTGGGATTTTGGAACGAAAAACCAACATTTTTCGTTTTTTTATTCATTAAAAACCGGAGAAAATGAGCTGAAAATATTTTCTACTGCGTTAATGATTACTGTAGAAAGTTTTGAAGCATGCGCCTTCAATACAGTACCCAGAGGGTTTTTGTTTTGTTTTTGAGGAAACTTCCTCGCAAAAAAGGAATGAAAACTTTTACAAAGTCATTTTCTAGTAAAAAACAGCAATTTTCATTTAATTTTATCATTAAAAAGCGAAAAAAATGACCTGAAAACAGTTTCTATTGCATAAAAATCTACTGTAGAAAGTTTCGAAGCATGCGCCTTTAATACAGTACCCGGCTTTTTTGAGTGTTTTCGATAGATTTTCTGACGAAAAATCGGAAAAAAAACGCACAAAAAACGTATTTTTATTTATTAAAAACCGAGAAAAATGGCCTGAAAATGCATATTTTAGACTAAATATTCAGTTTTGAAGAACGCGCCTTCAAATACAGTAATAAAATGAATAAAATTGATTTTTTATGCAAAAAAAA</canonical>
            <polymorphic>ATATAAAAAACGAAGAAAACAATTTTTAGGAGAAAAATATTTTTTATCCCAAAAATTTCAAATTCCCGCCTTGCCGCTACCGCTAATTCCAATTTTTATTATCTCAAATGATCTATTTATATTCCCACCCCATCTCTCTTTTACATGCATGCACCCTCCCGATTTATCGATTTTTTCCCGGTCAATTTAGGCCAATATTCCACTTTTTTTCTTGAAATTTATCGATTTTTTTTTCGCTCTTTTCAAAAATAAAAACGTCGAGATTTCAATTTTTAATTTGTTTTTTTCAACAATTAAATTTAACCCATTTTCATCTCTTTTCGCCAGATGATCTCTGAAAAATTGATTCAAAACCGGAGAAAAAGAGCTGAAAATATTTTCATTTTCCGCCTAAAACATCACTGTAGATAAACTTTGAGGCATGCGCCTTTAATACAGTACCCAGACGATTTTTTAGGGTTTTGTTGGGATTTTGGAACGAAAAACCAACATTTTTCGTWTTTTTATTCATTAAAAACCGGAGAAAATGAGCTGAAAATATTTTCTACTGCGTTAATGATTACTGTAGAAAGTTTTGAAGCATGCGCCTTCAATACAGTACCCAGAGGGTTTTTGTTTTGTTTTTGAGGAAACTTCCTCGCAAAAAAGGAATGAAAACTTTTACAAAGTCATTTTCTAGTAAAAAACAGCAATTTTCATTTAATTTTATCATTAAAAAGCGAAAAAAATGACCTGAAAACAGTTTCTATTGCATAAAAATCTACTGTAGAAAGTTTCGAAGCATGCGCCTTTAATACAGTACCCGGCTTTTTTGAGTGTTTTCGATAGATTTTCTGACGAAAAATCGGAAAAAAAACGCACAAAAAACGTATTTTTATTTATTAAAAACCGAGAAAAATGGCCTGAAAATGCATATTTTAGACTAAATATTCAGTTTTGAAGAACGCGCCTTCAAATACAGTAATAAAATGAATAAAATTGATTTTTTATGCAAAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCTGAAAAATTGATTCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TGCTTCAAAACTTTCTACAGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTCTGAAAAATTGATTCAAAACCGGAGAAAAAGAGCTGAAAATATTTTCATTTTCCGCCTAAAACATCACTGTAGATAAACTTTGAGGCATGCGCCTTTAATACAGTACCCAGACGATTTTTTAGGGTTTTGTTGGGATTTTGGAACGAAAAACCAACATTTTTCGTTTTTTTATTCATTAAAAACCGGAGAAAATGAGCTGAAAATATTTTCTACTGCGTTAATGATTACTGTAGAAAGTTTTGAAGCA</canonical_amplicon>
		<polymorphic_amplicon>TCTCTGAAAAATTGATTCAAAACCGGAGAAAAAGAGCTGAAAATATTTTCATTTTCCGCCTAAAACATCACTGTAGATAAACTTTGAGGCATGCGCCTTTAATACAGTACCCAGACGATTTTTTAGGGTTTTGTTGGGATTTTGGAACGAAAAACCAACATTTTTCGTWTTTTTATTCATTAAAAACCGGAGAAAATGAGCTGAAAATATTTTCTACTGCGTTAATGATTACTGTAGAAAGTTTTGAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15027</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>218011</contig_pos>
        <strand>+</strand>
        <context>CCGAAACAGT[A/G]WSAGTTCTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGAGAGGCACAAGTGAAGGAAATCAAGAAACCAAAAATCCCGAAACAGT</left_flank>
        <right_flank>AAAGTTCTCGAAACAGTGGAAAGAGAAAGCCTGAAGAGAGAAAGCAAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGAGGATCCTACATTTCGGTTCATTTTCCATGATTTTATGGTGGAGATATCAAGGTTTGTGAATTTTGGATTTTAGGTCATAACTCGGCCAGTTTTTGTCCGAATTAACTGGCAATCCTTTATTAGTTTTGGTCAAAGCTGGGTTAATTTTGGTTAAATTCTTATTTGGGTTAATTTTTTGAGCTCGCCCTGTCTTCAGCTTCAAAATGAGTATAAACAAGACTAGTTTTCATGAATTTTGATTTTTGAGTTTAAAGAGATGTTTAAAGGCGCATGCACACTTGAAAAGTCGAATTTTCGGGAACCTAGTCTTGTTTATACTCGTTCTAAAGTTAAAGTCATAGTACATTTGATTTTCTATTTACTTTTCAGAACTCATATCCGCAAAATTCTTGTGAAATCGAGAGCTACATTGAAGGGCATTTCCAAAGATCCATGGATGGTGGGAGGAGAGGCACAAGTGAAGGAAATCAAGAAACCAAAAATCCCGAAACAGTCAAAGTTCTCGAAACAGTGGAAAGAGAAAGCCTGAAGAGAGAAAGCAAGAGAAAGAAGCTACCGAAAATGCAGAAGATTTACTCTATTCTATTCCAATGTTTTTTAATGACTAGAATGAATAAAAAATGAAAAATTAAAAAATTTTATGTTTTGGAAAAGTATGAATAAATCGAATATATTAGGTTGTTCGGAAAGTCCTTTCCACTTTTGATATGTTGTTTTCAAACTTCGTTTTCTTGAAGGGGATAAAAACGAGGAAGGAGTTTCTCGACCTTCAACGCCTCCTTCACCTTCTTCAGACAATTCGTACGGATCTTCTTTTGCTTTCTAATACAATCCTTCGAAGTCTCCCTTTTTTTCGGACAGCTCTCACCATCCATCGAATCAGTCAGGCTTCGGATATTTGCATTGTATTCTTCTTTTTTCTGTCGGAGCCTCCTAGCATTCTCCAACGCCTTCTCGTGTGCATTGTTGGCACTGAGGTGTTGTCGTCGATCTGA</canonical>
            <polymorphic>AGAGAGGATCCTACATTTCGGTTCATTTTCCATGATTTTATGGTGGAGATATCAAGGTTTGTGAATTTTGGATTTTAGGTCATAACTCGGCCAGTTTTTGTCCGAATTAACTGGCAATCCTTTATTAGTTTTGGTCAAAGCTGGGTTAATTTTGGTTAAATTCTTATTTGGGTTAATTTTTTGAGCTCGCCCTGTCTTCAGCTTCAAAATGAGTATAAACAAGACTAGTTTTCATGAATTTTGATTTTTGAGTTTAAAGAGATGTTTAAAGGCGCATGCACACTTGAAAAGTCGAATTTTCGGGAACCTAGTCTTGTTTATACTCGTTCTAAAGTTAAAGTCATAGTACATTTGATTTTCTATTTACTTTTCAGAACTCATATCCGCAAAATTCTTGTGAAATCGAGAGCTACATTGAAGGGCATTTCCAAAGATCCATGGATGGTGGGAGGAGAGGCACAAGTGAAGGAAATCAAGAAACCAAAAATCCCGAAACAGTRAAAGTTCTCGAAACAGTGGAAAGAGAAAGCCTGAAGAGAGAAAGCAAGAGAAAGAAGCTACCGAAAATGCAGAAGATTTACTCTATTCTATTCCAATGTTTTTTAATGACTAGAATGAATAAAAAATGAAAAATTAAAAAATTTTATGTTTTGGAAAAGTATGAATAAATCGAATATATTAGGTTGTTCGGAAAGTCCTTTCCACTTTTGATATGTTGTTTTCAAACTTCGTTTTCTTGAAGGGGATAAAAACGAGGAAGGAGTTTCTCGACCTTCAACGCCTCCTTCACCTTCTTCAGACAATTCGTACGGATCTTCTTTTGCTTTCTAATACAATCCTTCGAAGTCTCCCTTTTTTTCGGACAGCTCTCACCATCCATCGAATCAGTCAGGCTTCGGATATTTGCATTGTATTCTTCTTTTTTCTGTCGGAGCCTCCTAGCATTCTCCAACGCCTTCTCGTGTGCATTGTTGGCACTGAGGTGTTGTCGTCGATCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTGATTTTCTATTTACTTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>GAATAGAGTAAATCTTCTGCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CATTTGATTTTCTATTTACTTTTCAGAACTCATATCCGCAAAATTCTTGTGAAATCGAGAGCTACATTGAAGGGCATTTCCAAAGATCCATGGATGGTGGGAGGAGAGGCACAAGTGAAGGAAATCAAGAAACCAAAAATCCCGAAACAGTCAAAGTTCTCGAAACAGTGGAAAGAGAAAGCCTGAAGAGAGAAAGCAAGAGAAAGAAGCTACCGAAAATGCAGAAGATTTACTCTATTC</canonical_amplicon>
		<polymorphic_amplicon>CATTTGATTTTCTATTTACTTTTCAGAACTCATATCCGCAAAATTCTTGTGAAATCGAGAGCTACATTGAAGGGCATTTCCAAAGATCCATGGATGGTGGGAGGAGAGGCACAAGTGAAGGAAATCAAGAAACCAAAAATCCCGAAACAGTRAAAGTTCTCGAAACAGTGGAAAGAGAAAGCCTGAAGAGAGAAAGCAAGAGAAAGAAGCTACCGAAAATGCAGAAGATTTACTCTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15028</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>218361</contig_pos>
        <strand>+</strand>
        <context>TTCGAAGTCT[C/T]CCTTTTTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAATTCGTACGGATCTTCTTTTGCTTTCTAATACAATCCTTCGAAGTCT</left_flank>
        <right_flank>CCTTTTTTTCGGACAGCTCTCACCATCCATCGAATCAGTCAGGCTTCGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGATTTTCTATTTACTTTTCAGAACTCATATCCGCAAAATTCTTGTGAAATCGAGAGCTACATTGAAGGGCATTTCCAAAGATCCATGGATGGTGGGAGGAGAGGCACAAGTGAAGGAAATCAAGAAACCAAAAATCCCGAAACAGTCAAAGTTCTCGAAACAGTGGAAAGAGAAAGCCTGAAGAGAGAAAGCAAGAGAAAGAAGCTACCGAAAATGCAGAAGATTTACTCTATTCTATTCCAATGTTTTTTAATGACTAGAATGAATAAAAAATGAAAAATTAAAAAATTTTATGTTTTGGAAAAGTATGAATAAATCGAATATATTAGGTTGTTCGGAAAGTCCTTTCCACTTTTGATATGTTGTTTTCAAACTTCGTTTTCTTGAAGGGGATAAAAACGAGGAAGGAGTTTCTCGACCTTCAACGCCTCCTTCACCTTCTTCAGACAATTCGTACGGATCTTCTTTTGCTTTCTAATACAATCCTTCGAAGTCTCCCTTTTTTTCGGACAGCTCTCACCATCCATCGAATCAGTCAGGCTTCGGATATTTGCATTGTATTCTTCTTTTTTCTGTCGGAGCCTCCTAGCATTCTCCAACGCCTTCTCGTGTGCATTGTTGGCACTGAGGTGTTGTCGTCGATCTGAAATCGGAATTATCTTATTGTTTTAACATTCTGGCGCATCGGATGAGTGAAACAAGACAAACTAACAAGGGGACCTTTTAAGTTGACCCTAAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTGTTGAATTTTTGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTAATTTTCGGAATTTTCTTGAATTTTCGGAATTTTCTCGAATTAATTTTCGGAATTTTCTCGAATTTTCTCGAATTTTCGGAATTTTCTGAACTTTTGGATTTTCTGAACTTTTCTGGATTTTTAGTATTT</canonical>
            <polymorphic>TTTGATTTTCTATTTACTTTTCAGAACTCATATCCGCAAAATTCTTGTGAAATCGAGAGCTACATTGAAGGGCATTTCCAAAGATCCATGGATGGTGGGAGGAGAGGCACAAGTGAAGGAAATCAAGAAACCAAAAATCCCGAAACAGTCAAAGTTCTCGAAACAGTGGAAAGAGAAAGCCTGAAGAGAGAAAGCAAGAGAAAGAAGCTACCGAAAATGCAGAAGATTTACTCTATTCTATTCCAATGTTTTTTAATGACTAGAATGAATAAAAAATGAAAAATTAAAAAATTTTATGTTTTGGAAAAGTATGAATAAATCGAATATATTAGGTTGTTCGGAAAGTCCTTTCCACTTTTGATATGTTGTTTTCAAACTTCGTTTTCTTGAAGGGGATAAAAACGAGGAAGGAGTTTCTCGACCTTCAACGCCTCCTTCACCTTCTTCAGACAATTCGTACGGATCTTCTTTTGCTTTCTAATACAATCCTTCGAAGTCTYCCTTTTTTTCGGACAGCTCTCACCATCCATCGAATCAGTCAGGCTTCGGATATTTGCATTGTATTCTTCTTTTTTCTGTCGGAGCCTCCTAGCATTCTCCAACGCCTTCTCGTGTGCATTGTTGGCACTGAGGTGTTGTCGTCGATCTGAAATCGGAATTATCTTATTGTTTTAACATTCTGGCGCATCGGATGAGTGAAACAAGACAAACTAACAAGGGGACCTTTTAAGTTGACCCTAAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTGTTGAATTTTTGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTAATTTTCGGAATTTTCTTGAATTTTCGGAATTTTCTCGAATTAATTTTCGGAATTTTCTCGAATTTTCTCGAATTTTCGGAATTTTCTGAACTTTTGGATTTTCTGAACTTTTCTGGATTTTTAGTATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCACCTTCTTCAGACAATTC</pcr_primer_p1>
		<pcr_primer_p2>GCCAGAATGTTAAAACAATAAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCACCTTCTTCAGACAATTCGTACGGATCTTCTTTTGCTTTCTAATACAATCCTTCGAAGTCTCCCTTTTTTTCGGACAGCTCTCACCATCCATCGAATCAGTCAGGCTTCGGATATTTGCATTGTATTCTTCTTTTTTCTGTCGGAGCCTCCTAGCATTCTCCAACGCCTTCTCGTGTGCATTGTTGGCACTGAGGTGTTGTCGTCGATCTGAAATCGGAATTATCTTATTGTTTTAACATTCTGGC</canonical_amplicon>
		<polymorphic_amplicon>CTTCACCTTCTTCAGACAATTCGTACGGATCTTCTTTTGCTTTCTAATACAATCCTTCGAAGTCTYCCTTTTTTTCGGACAGCTCTCACCATCCATCGAATCAGTCAGGCTTCGGATATTTGCATTGTATTCTTCTTTTTTCTGTCGGAGCCTCCTAGCATTCTCCAACGCCTTCTCGTGTGCATTGTTGGCACTGAGGTGTTGTCGTCGATCTGAAATCGGAATTATCTTATTGTTTTAACATTCTGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15029</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>218483</contig_pos>
        <strand>+</strand>
        <context>GTGTGCATTG[G/T]TGGCACTGAR</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTCTGTCGGAGCCTCCTAGCATTCTCCAACGCCTTCTCGTGTGCATTG</left_flank>
        <right_flank>TGGCACTGAGGTGTTGTCGTCGATCTGAAATCGGAATTATCTTATTGTTT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAGAAACCAAAAATCCCGAAACAGTCAAAGTTCTCGAAACAGTGGAAAGAGAAAGCCTGAAGAGAGAAAGCAAGAGAAAGAAGCTACCGAAAATGCAGAAGATTTACTCTATTCTATTCCAATGTTTTTTAATGACTAGAATGAATAAAAAATGAAAAATTAAAAAATTTTATGTTTTGGAAAAGTATGAATAAATCGAATATATTAGGTTGTTCGGAAAGTCCTTTCCACTTTTGATATGTTGTTTTCAAACTTCGTTTTCTTGAAGGGGATAAAAACGAGGAAGGAGTTTCTCGACCTTCAACGCCTCCTTCACCTTCTTCAGACAATTCGTACGGATCTTCTTTTGCTTTCTAATACAATCCTTCGAAGTCTCCCTTTTTTTCGGACAGCTCTCACCATCCATCGAATCAGTCAGGCTTCGGATATTTGCATTGTATTCTTCTTTTTTCTGTCGGAGCCTCCTAGCATTCTCCAACGCCTTCTCGTGTGCATTGTTGGCACTGAGGTGTTGTCGTCGATCTGAAATCGGAATTATCTTATTGTTTTAACATTCTGGCGCATCGGATGAGTGAAACAAGACAAACTAACAAGGGGACCTTTTAAGTTGACCCTAAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTGTTGAATTTTTGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTAATTTTCGGAATTTTCTTGAATTTTCGGAATTTTCTCGAATTAATTTTCGGAATTTTCTCGAATTTTCTCGAATTTTCGGAATTTTCTGAACTTTTGGATTTTCTGAACTTTTCTGGATTTTTAGTATTTTCTGAACTTTTCTGGATTTTCTGGAATTTCCCATTTTTCTCGAAATTTTGAATTTTCTCGAATTTTCGGAATTTTTGAATTTTCTGGAATTTTCCAATTTTCTCGGGTAAAATTGATAGATT</canonical>
            <polymorphic>TCAAGAAACCAAAAATCCCGAAACAGTCAAAGTTCTCGAAACAGTGGAAAGAGAAAGCCTGAAGAGAGAAAGCAAGAGAAAGAAGCTACCGAAAATGCAGAAGATTTACTCTATTCTATTCCAATGTTTTTTAATGACTAGAATGAATAAAAAATGAAAAATTAAAAAATTTTATGTTTTGGAAAAGTATGAATAAATCGAATATATTAGGTTGTTCGGAAAGTCCTTTCCACTTTTGATATGTTGTTTTCAAACTTCGTTTTCTTGAAGGGGATAAAAACGAGGAAGGAGTTTCTCGACCTTCAACGCCTCCTTCACCTTCTTCAGACAATTCGTACGGATCTTCTTTTGCTTTCTAATACAATCCTTCGAAGTCTCCCTTTTTTTCGGACAGCTCTCACCATCCATCGAATCAGTCAGGCTTCGGATATTTGCATTGTATTCTTCTTTTTTCTGTCGGAGCCTCCTAGCATTCTCCAACGCCTTCTCGTGTGCATTGKTGGCACTGAGGTGTTGTCGTCGATCTGAAATCGGAATTATCTTATTGTTTTAACATTCTGGCGCATCGGATGAGTGAAACAAGACAAACTAACAAGGGGACCTTTTAAGTTGACCCTAAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTGTTGAATTTTTGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTAATTTTCGGAATTTTCTTGAATTTTCGGAATTTTCTCGAATTAATTTTCGGAATTTTCTCGAATTTTCTCGAATTTTCGGAATTTTCTGAACTTTTGGATTTTCTGAACTTTTCTGGATTTTTAGTATTTTCTGAACTTTTCTGGATTTTCTGGAATTTCCCATTTTTCTCGAAATTTTGAATTTTCTCGAATTTTCGGAATTTTTGAATTTTCTGGAATTTTCCAATTTTCTCGGGTAAAATTGATAGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCACCTTCTTCAGACAATTC</pcr_primer_p1>
		<pcr_primer_p2>GCCAGAATGTTAAAACAATAAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCACCTTCTTCAGACAATTCGTACGGATCTTCTTTTGCTTTCTAATACAATCCTTCGAAGTCTCCCTTTTTTTCGGACAGCTCTCACCATCCATCGAATCAGTCAGGCTTCGGATATTTGCATTGTATTCTTCTTTTTTCTGTCGGAGCCTCCTAGCATTCTCCAACGCCTTCTCGTGTGCATTGTTGGCACTGAGGTGTTGTCGTCGATCTGAAATCGGAATTATCTTATTGTTTTAACATTCTGGC</canonical_amplicon>
		<polymorphic_amplicon>CTTCACCTTCTTCAGACAATTCGTACGGATCTTCTTTTGCTTTCTAATACAATCCTTCGAAGTCTCCCTTTTTTTCGGACAGCTCTCACCATCCATCGAATCAGTCAGGCTTCGGATATTTGCATTGTATTCTTCTTTTTTCTGTCGGAGCCTCCTAGCATTCTCCAACGCCTTCTCGTGTGCATTGKTGGCACTGAGGTGTTGTCGTCGATCTGAAATCGGAATTATCTTATTGTTTTAACATTCTGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15030</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>220902</contig_pos>
        <strand></strand>
        <context>CTAAAGGAGC[G/A]ATTTGaggcc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGC</left_flank>
        <right_flank>ATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGGGTATTTATAGGGAGGGGGCGGAGTCAAATGCAGTTGGCCAGGTGCCAGGTGGTGTCAGGGAGACAGGTGTGACATTTTGGGGGTGATTAGGGTAATAAAAAGTTTTGAAGGAGTACTTGAAAGGTATTTAAGAGGTGCTGACACCATCTTTATGACAGTAATTTTGTGATTACTGTAGTTTTTCCCAGGAGAAATGTGGAGAAATGTGTTCAGATCCATTGGAGGTTATAGTGTGTTTTTAAAAAAATTTCAGCATAGTTTTCAGACTCTAAAAATGAACGAAAATCGATTTTTGAACCGGTTTTTGAAGCCAAACGTCGTTCAAATCGGCCCAACATGATTGAAAGTTGGCCATTTTCCAACAATTTTCCTCACCAATTATCCCCGAAATTTATACAATTTTTTCAGGAAAAAAAAATTACACTGTTTCAATGTTTACAATTTTTCTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCGATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAAATTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCAATTTTTCTAGAAAAGGTTGAAATCTGGGCAAATCCGATACTTTTGCAATCTGCGCTTTTGCAGAAGAGCTCTTCGTGACCTACACTCCGAAGTTAAGATCAATCAAAAATATCGATTTTCAACAAATCTATATTCCCCTTGCTGTCGACCGCTACGCCGACACGCGACGCTCCCAAACTAAGCTCGATGCCAAATTTCGAATTCCCACAATCAAGCACCCTTCAAAAAGCTCTTATTATTTCCAATAATCC</canonical>
            <polymorphic>GGGGGTATTTATAGGGAGGGGGCGGAGTCAAATGCAGTTGGCCAGGTGCCAGGTGGTGTCAGGGAGACAGGTGTGACATTTTGGGGGTGATTAGGGTAATAAAAAGTTTTGAAGGAGTACTTGAAAGGTATTTAAGAGGTGCTGACACCATCTTTATGACAGTAATTTTGTGATTACTGTAGTTTTTCCCAGGAGAAATGTGGAGAAATGTGTTCAGATCCATTGGAGGTTATAGTGTGTTTTTAAAAAAATTTCAGCATAGTTTTCAGACTCTAAAAATGAACGAAAATCGATTTTTGAACCGGTTTTTGAAGCCAAACGTCGTTCAAATCGGCCCAACATGATTGAAAGTTGGCCATTTTCCAACAATTTTCCTCACCAATTATCCCCGAAATTTATACAATTTTTTCAGGAAAAAAAAATTACACTGTTTCAATGTTTACAATTTTTCTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCRATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAAATTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCAATTTTTCTAGAAAAGGTTGAAATCTGGGCAAATCCGATACTTTTGCAATCTGCGCTTTTGCAGAAGAGCTCTTCGTGACCTACACTCCGAAGTTAAGATCAATCAAAAATATCGATTTTCAACAAATCTATATTCCCCTTGCTGTCGACCGCTACGCCGACACGCGACGCTCCCAAACTAAGCTCGATGCCAAATTTCGAATTCCCACAATCAAGCACCCTTCAAAAAGCTCTTATTATTTCCAATAATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTGACCAAGCTATTCCTAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAAAATTGCTCATTGAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>308</pcr_amplicon_size>
		<canonical_amplicon>TTCTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCGATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAAATTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCAATTTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTCTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCRATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAAATTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCAATTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15032</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>220806</contig_pos>
        <strand></strand>
        <context>ATTTATACAW[T/A]TTTTTCAGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GGCCATTTTCCAACAATTTTCCTCACCAATTATCCCCGAAATTTATACAA</left_flank>
        <right_flank>TTTTTCAGGAAAAAAAAATTACACTGTTTCAATGTTTACAATTTTTCTGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGAACAGAATAGAATATTCTAGAGATCAGAATAGAAGTAGCGAATTTTCAGAAAAAATCAATAGGAATAGAATGAATACTAAAGTTAGGCACCTGGGGGTATTTATAGGGAGGGGGCGGAGTCAAATGCAGTTGGCCAGGTGCCAGGTGGTGTCAGGGAGACAGGTGTGACATTTTGGGGGTGATTAGGGTAATAAAAAGTTTTGAAGGAGTACTTGAAAGGTATTTAAGAGGTGCTGACACCATCTTTATGACAGTAATTTTGTGATTACTGTAGTTTTTCCCAGGAGAAATGTGGAGAAATGTGTTCAGATCCATTGGAGGTTATAGTGTGTTTTTAAAAAAATTTCAGCATAGTTTTCAGACTCTAAAAATGAACGAAAATCGATTTTTGAACCGGTTTTTGAAGCCAAACGTCGTTCAAATCGGCCCAACATGATTGAAAGTTGGCCATTTTCCAACAATTTTCCTCACCAATTATCCCCGAAATTTATACAATTTTTTCAGGAAAAAAAAATTACACTGTTTCAATGTTTACAATTTTTCTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCGATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAAATTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCAATTTTTCTAGAAAAGGTTGAAATCTGGGCAAATCCGATACTTTTGCAATCTGCGCTTTTGCAGAAGAGCTCTTCGTGACCTACACTCCGAAGTTAAGATCAATCAAAAATATCGATTTTCAACAAATCTATATTCCCCTTGCTGTCGACCGCTAC</canonical>
            <polymorphic>TTGGAACAGAATAGAATATTCTAGAGATCAGAATAGAAGTAGCGAATTTTCAGAAAAAATCAATAGGAATAGAATGAATACTAAAGTTAGGCACCTGGGGGTATTTATAGGGAGGGGGCGGAGTCAAATGCAGTTGGCCAGGTGCCAGGTGGTGTCAGGGAGACAGGTGTGACATTTTGGGGGTGATTAGGGTAATAAAAAGTTTTGAAGGAGTACTTGAAAGGTATTTAAGAGGTGCTGACACCATCTTTATGACAGTAATTTTGTGATTACTGTAGTTTTTCCCAGGAGAAATGTGGAGAAATGTGTTCAGATCCATTGGAGGTTATAGTGTGTTTTTAAAAAAATTTCAGCATAGTTTTCAGACTCTAAAAATGAACGAAAATCGATTTTTGAACCGGTTTTTGAAGCCAAACGTCGTTCAAATCGGCCCAACATGATTGAAAGTTGGCCATTTTCCAACAATTTTCCTCACCAATTATCCCCGAAATTTATACAAWTTTTTCAGGAAAAAAAAATTACACTGTTTCAATGTTTACAATTTTTCTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCGATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAAATTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCAATTTTTCTAGAAAAGGTTGAAATCTGGGCAAATCCGATACTTTTGCAATCTGCGCTTTTGCAGAAGAGCTCTTCGTGACCTACACTCCGAAGTTAAGATCAATCAAAAATATCGATTTTCAACAAATCTATATTCCCCTTGCTGTCGACCGCTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>215 156 118 86 72 45 44 35 35 34 33 25 23 19 15 13 12 11 9</canonical_bands>
                <polymorphic_bands>215 156 118 86 72 45 44 35 35 34 33 28 25 23 15 13 12 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATCCATTGGAGGTTATAGTGT</pcr_primer_p1>
		<pcr_primer_p2>ATAGCTTGGTCAGAAAAATTGTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGATCCATTGGAGGTTATAGTGTGTTTTTAAAAAAATTTCAGCATAGTTTTCAGACTCTAAAAATGAACGAAAATCGATTTTTGAACCGGTTTTTGAAGCCAAACGTCGTTCAAATCGGCCCAACATGATTGAAAGTTGGCCATTTTCCAACAATTTTCCTCACCAATTATCCCCGAAATTTATACAATTTTTTCAGGAAAAAAAAATTACACTGTTTCAATGTTTACAATTTTTCTGACCAAGCTAT</canonical_amplicon>
		<polymorphic_amplicon>AGATCCATTGGAGGTTATAGTGTGTTTTTAAAAAAATTTCAGCATAGTTTTCAGACTCTAAAAATGAACGAAAATCGATTTTTGAACCGGTTTTTGAAGCCAAACGTCGTTCAAATCGGCCCAACATGATTGAAAGTTGGCCATTTTCCAACAATTTTCCTCACCAATTATCCCCGAAATTTATACAAWTTTTTCAGGAAAAAAAAATTACACTGTTTCAATGTTTACAATTTTTCTGACCAAGCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15033</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>220805</contig_pos>
        <strand></strand>
        <context>AATTTATACA[A/T]WTTTTTCAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGGCCATTTTCCAACAATTTTCCTCACCAATTATCCCCGAAATTTATACA</left_flank>
        <right_flank>TTTTTTCAGGAAAAAAAAATTACACTGTTTCAATGTTTACAATTTTTCTG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTGGAACAGAATAGAATATTCTAGAGATCAGAATAGAAGTAGCGAATTTTCAGAAAAAATCAATAGGAATAGAATGAATACTAAAGTTAGGCACCTGGGGGTATTTATAGGGAGGGGGCGGAGTCAAATGCAGTTGGCCAGGTGCCAGGTGGTGTCAGGGAGACAGGTGTGACATTTTGGGGGTGATTAGGGTAATAAAAAGTTTTGAAGGAGTACTTGAAAGGTATTTAAGAGGTGCTGACACCATCTTTATGACAGTAATTTTGTGATTACTGTAGTTTTTCCCAGGAGAAATGTGGAGAAATGTGTTCAGATCCATTGGAGGTTATAGTGTGTTTTTAAAAAAATTTCAGCATAGTTTTCAGACTCTAAAAATGAACGAAAATCGATTTTTGAACCGGTTTTTGAAGCCAAACGTCGTTCAAATCGGCCCAACATGATTGAAAGTTGGCCATTTTCCAACAATTTTCCTCACCAATTATCCCCGAAATTTATACAATTTTTTCAGGAAAAAAAAATTACACTGTTTCAATGTTTACAATTTTTCTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCGATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAAATTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCAATTTTTCTAGAAAAGGTTGAAATCTGGGCAAATCCGATACTTTTGCAATCTGCGCTTTTGCAGAAGAGCTCTTCGTGACCTACACTCCGAAGTTAAGATCAATCAAAAATATCGATTTTCAACAAATCTATATTCCCCTTGCTGTCGACCGCTA</canonical>
            <polymorphic>GTTGGAACAGAATAGAATATTCTAGAGATCAGAATAGAAGTAGCGAATTTTCAGAAAAAATCAATAGGAATAGAATGAATACTAAAGTTAGGCACCTGGGGGTATTTATAGGGAGGGGGCGGAGTCAAATGCAGTTGGCCAGGTGCCAGGTGGTGTCAGGGAGACAGGTGTGACATTTTGGGGGTGATTAGGGTAATAAAAAGTTTTGAAGGAGTACTTGAAAGGTATTTAAGAGGTGCTGACACCATCTTTATGACAGTAATTTTGTGATTACTGTAGTTTTTCCCAGGAGAAATGTGGAGAAATGTGTTCAGATCCATTGGAGGTTATAGTGTGTTTTTAAAAAAATTTCAGCATAGTTTTCAGACTCTAAAAATGAACGAAAATCGATTTTTGAACCGGTTTTTGAAGCCAAACGTCGTTCAAATCGGCCCAACATGATTGAAAGTTGGCCATTTTCCAACAATTTTCCTCACCAATTATCCCCGAAATTTATACAWTTTTTTCAGGAAAAAAAAATTACACTGTTTCAATGTTTACAATTTTTCTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCGATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAAATTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCAATTTTTCTAGAAAAGGTTGAAATCTGGGCAAATCCGATACTTTTGCAATCTGCGCTTTTGCAGAAGAGCTCTTCGTGACCTACACTCCGAAGTTAAGATCAATCAAAAATATCGATTTTCAACAAATCTATATTCCCCTTGCTGTCGACCGCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>215 155 118 86 72 45 45 35 35 34 33 25 23 19 15 13 12 11 9</canonical_bands>
                <polymorphic_bands>215 155 118 86 72 45 45 35 35 34 33 28 25 23 15 13 12 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATCCATTGGAGGTTATAGTGT</pcr_primer_p1>
		<pcr_primer_p2>ATAGCTTGGTCAGAAAAATTGTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGATCCATTGGAGGTTATAGTGTGTTTTTAAAAAAATTTCAGCATAGTTTTCAGACTCTAAAAATGAACGAAAATCGATTTTTGAACCGGTTTTTGAAGCCAAACGTCGTTCAAATCGGCCCAACATGATTGAAAGTTGGCCATTTTCCAACAATTTTCCTCACCAATTATCCCCGAAATTTATACAATTTTTTCAGGAAAAAAAAATTACACTGTTTCAATGTTTACAATTTTTCTGACCAAGCTAT</canonical_amplicon>
		<polymorphic_amplicon>AGATCCATTGGAGGTTATAGTGTGTTTTTAAAAAAATTTCAGCATAGTTTTCAGACTCTAAAAATGAACGAAAATCGATTTTTGAACCGGTTTTTGAAGCCAAACGTCGTTCAAATCGGCCCAACATGATTGAAAGTTGGCCATTTTCCAACAATTTTCCTCACCAATTATCCCCGAAATTTATACAWTTTTTTCAGGAAAAAAAAATTACACTGTTTCAATGTTTACAATTTTTCTGACCAAGCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15035</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>221129</contig_pos>
        <strand></strand>
        <context>TGTTGAGAAT[T/C]ATCTGGAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAAT</left_flank>
        <right_flank>ATCTGGAAACTTTCAATGAGCAATTTTTCTAGAAAAGGTTGAAATCTGGG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTATAGTGTGTTTTTAAAAAAATTTCAGCATAGTTTTCAGACTCTAAAAATGAACGAAAATCGATTTTTGAACCGGTTTTTGAAGCCAAACGTCGTTCAAATCGGCCCAACATGATTGAAAGTTGGCCATTTTCCAACAATTTTCCTCACCAATTATCCCCGAAATTTATACAATTTTTTCAGGAAAAAAAAATTACACTGTTTCAATGTTTACAATTTTTCTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCGATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAAATTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCAATTTTTCTAGAAAAGGTTGAAATCTGGGCAAATCCGATACTTTTGCAATCTGCGCTTTTGCAGAAGAGCTCTTCGTGACCTACACTCCGAAGTTAAGATCAATCAAAAATATCGATTTTCAACAAATCTATATTCCCCTTGCTGTCGACCGCTACGCCGACACGCGACGCTCCCAAACTAAGCTCGATGCCAAATTTCGAATTCCCACAATCAAGCACCCTTCAAAAAGCTCTTATTATTTCCAATAATCCATGTGAAAACGTGCATTTCTGCTGGGAAAAACTACAGTAATCACCAGATTAATGTCATAAAAATGGTAAGAAAAGGGGAGAAATGCCACTTTTTAAGTACCCTCTCCAAACTTTTTATTACCCTAATTACCCCCCATTATGTCACACCTGTCTCCCTGACACCACCTGGCACCTGGCTAATTGAATTAGGCTCCGCCCCCTCCCTATAAATACCCCCAGGTGCCTAA</canonical>
            <polymorphic>GGTTATAGTGTGTTTTTAAAAAAATTTCAGCATAGTTTTCAGACTCTAAAAATGAACGAAAATCGATTTTTGAACCGGTTTTTGAAGCCAAACGTCGTTCAAATCGGCCCAACATGATTGAAAGTTGGCCATTTTCCAACAATTTTCCTCACCAATTATCCCCGAAATTTATACAATTTTTTCAGGAAAAAAAAATTACACTGTTTCAATGTTTACAATTTTTCTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCGATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAAATTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAATYATCTGGAAACTTTCAATGAGCAATTTTTCTAGAAAAGGTTGAAATCTGGGCAAATCCGATACTTTTGCAATCTGCGCTTTTGCAGAAGAGCTCTTCGTGACCTACACTCCGAAGTTAAGATCAATCAAAAATATCGATTTTCAACAAATCTATATTCCCCTTGCTGTCGACCGCTACGCCGACACGCGACGCTCCCAAACTAAGCTCGATGCCAAATTTCGAATTCCCACAATCAAGCACCCTTCAAAAAGCTCTTATTATTTCCAATAATCCATGTGAAAACGTGCATTTCTGCTGGGAAAAACTACAGTAATCACCAGATTAATGTCATAAAAATGGTAAGAAAAGGGGAGAAATGCCACTTTTTAAGTACCCTCTCCAAACTTTTTATTACCCTAATTACCCCCCATTATGTCACACCTGTCTCCCTGACACCACCTGGCACCTGGCTAATTGAATTAGGCTCCGCCCCCTCCCTATAAATACCCCCAGGTGCCTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>193 176 118 72 54 45 44 35 35 34 33 25 23 22 19 15 13 12 11 9 7 5</canonical_bands>
                <polymorphic_bands>193 176 118 72 60 54 45 44 35 34 33 23 22 19 15 13 12 11 9 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGACCAAGCTATTCCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GATTGCAAAAGTATCGGATTT</pcr_primer_p2>
		<pcr_amplicon_size>349</pcr_amplicon_size>
		<canonical_amplicon>CTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCGATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAAATTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCAATTTTTCTAGAAAAGGTTGAAATCTGGGCAAATCCGATACTTTTGCAATC</canonical_amplicon>
		<polymorphic_amplicon>CTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCGATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAAATTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAATYATCTGGAAACTTTCAATGAGCAATTTTTCTAGAAAAGGTTGAAATCTGGGCAAATCCGATACTTTTGCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15036</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>221101</contig_pos>
        <strand></strand>
        <context>AATTTCAATA[T/C]GAAATCTATA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATA</left_flank>
        <right_flank>GAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGAGAAATGTGTTCAGATCCATTGGAGGTTATAGTGTGTTTTTAAAAAAATTTCAGCATAGTTTTCAGACTCTAAAAATGAACGAAAATCGATTTTTGAACCGGTTTTTGAAGCCAAACGTCGTTCAAATCGGCCCAACATGATTGAAAGTTGGCCATTTTCCAACAATTTTCCTCACCAATTATCCCCGAAATTTATACAATTTTTTCAGGAAAAAAAAATTACACTGTTTCAATGTTTACAATTTTTCTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCGATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAAATTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCAATTTTTCTAGAAAAGGTTGAAATCTGGGCAAATCCGATACTTTTGCAATCTGCGCTTTTGCAGAAGAGCTCTTCGTGACCTACACTCCGAAGTTAAGATCAATCAAAAATATCGATTTTCAACAAATCTATATTCCCCTTGCTGTCGACCGCTACGCCGACACGCGACGCTCCCAAACTAAGCTCGATGCCAAATTTCGAATTCCCACAATCAAGCACCCTTCAAAAAGCTCTTATTATTTCCAATAATCCATGTGAAAACGTGCATTTCTGCTGGGAAAAACTACAGTAATCACCAGATTAATGTCATAAAAATGGTAAGAAAAGGGGAGAAATGCCACTTTTTAAGTACCCTCTCCAAACTTTTTATTACCCTAATTACCCCCCATTATGTCACACCTGTCTCCCTGACACCACCTGGCACCTGGCTAATTGAATTAGGCTCCGCCCC</canonical>
            <polymorphic>GTGGAGAAATGTGTTCAGATCCATTGGAGGTTATAGTGTGTTTTTAAAAAAATTTCAGCATAGTTTTCAGACTCTAAAAATGAACGAAAATCGATTTTTGAACCGGTTTTTGAAGCCAAACGTCGTTCAAATCGGCCCAACATGATTGAAAGTTGGCCATTTTCCAACAATTTTCCTCACCAATTATCCCCGAAATTTATACAATTTTTTCAGGAAAAAAAAATTACACTGTTTCAATGTTTACAATTTTTCTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCGATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAAATTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATAYGAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCAATTTTTCTAGAAAAGGTTGAAATCTGGGCAAATCCGATACTTTTGCAATCTGCGCTTTTGCAGAAGAGCTCTTCGTGACCTACACTCCGAAGTTAAGATCAATCAAAAATATCGATTTTCAACAAATCTATATTCCCCTTGCTGTCGACCGCTACGCCGACACGCGACGCTCCCAAACTAAGCTCGATGCCAAATTTCGAATTCCCACAATCAAGCACCCTTCAAAAAGCTCTTATTATTTCCAATAATCCATGTGAAAACGTGCATTTCTGCTGGGAAAAACTACAGTAATCACCAGATTAATGTCATAAAAATGGTAAGAAAAGGGGAGAAATGCCACTTTTTAAGTACCCTCTCCAAACTTTTTATTACCCTAATTACCCCCCATTATGTCACACCTGTCTCCCTGACACCACCTGGCACCTGGCTAATTGAATTAGGCTCCGCCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGACCAAGCTATTCCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAAAATTGCTCATTGAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>306</pcr_amplicon_size>
		<canonical_amplicon>CTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCGATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAAATTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCAATTTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCGATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAAATTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATAYGAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCAATTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15037</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>227864</contig_pos>
        <strand>+</strand>
        <context>TTGTTTAGCT[A/G]AAGCTTGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGCTGGAGCTGACTCAGCTGGCGCCTCTGAAGCTTCTGCTTGTTTAGCT</left_flank>
        <right_flank>AAGCTTGTTTAGAGTTGTTAATGCTGTTGGCGTTCCGTGTAGCCGGAATT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATTCCGTCCTTCCTATCCACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCTGATGTGCCAGCCTGATCTTCTATTTCATCTTCCACTCTCTTTTCTTGGACTGGATCCTTATCATATCCACGAGCCACTCTCATTTCTTCGATGTATTGATCCATGAGTTTGAATCGCGGATCTGGTGCCCTGAAATAATTTAAGTTATAGATTTCTAGCTCAAAAGTTCTATATTTTTAGCTAAAGACTTACTTAGGACCGCCCGGTCGATAATGGTCCAGTGGGAAGAGCCAAGGTCTGCCATGTTTGGGAAGATCCTCTTCGAACACCTCGTACTTCCTGATCCACTCTGGAATTTCTTTGATTACGGCGTGCGGTCCGTACGCTGGTTTTGGAGCTGGAGCTGACTCAGCTGGCGCCTCTGAAGCTTCTGCTTGTTTAGCTAAAGCTTGTTTAGAGTTGTTAATGCTGTTGGCGTTCCGTGTAGCCGGAATTTCCAGGTCCAATGGTTCAATGAAGTCCGCATCTCTAGCTTCAGGCTCTTTATCCTCCAAATTCTGATTCTGCTCCTTTCTTGGTCTTCCTGAACGTCGTTTGGCGGGAATTGGGATTACTTGTTCTTGATCCTTTGGTCCTTGACCCTCTGATTCTTGCTCCTCAGATCCTTGATCCCCTGGGCCCGAAATTTCTCGATCTACTGGAACCGTGCTTGCTTCTTGATTCTCTGGCACTGCCTCCTGACCTGTCTGTCTCTCTGATTTGCCTTCTGATAACTTCGATGGACCAGGAGCTTCCTCTGCTGAAGCTGCTGAATCTAAATTAGGGTCTGAAGGCTTCACGATGCTTGGAACTAGAAGTTTAGCCCTTTTTGAGGCGCTTGAAAAATCTGGAAGCGCGTTTCTCTTGGTTTTCAGGATAGCTAAACGGTTTGAACACTTGAATGGG</canonical>
            <polymorphic>CTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATTCCGTCCTTCCTATCCACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCTGATGTGCCAGCCTGATCTTCTATTTCATCTTCCACTCTCTTTTCTTGGACTGGATCCTTATCATATCCACGAGCCACTCTCATTTCTTCGATGTATTGATCCATGAGTTTGAATCGCGGATCTGGTGCCCTGAAATAATTTAAGTTATAGATTTCTAGCTCAAAAGTTCTATATTTTTAGCTAAAGACTTACTTAGGACCGCCCGGTCGATAATGGTCCAGTGGGAAGAGCCAAGGTCTGCCATGTTTGGGAAGATCCTCTTCGAACACCTCGTACTTCCTGATCCACTCTGGAATTTCTTTGATTACGGCGTGCGGTCCGTACGCTGGTTTTGGAGCTGGAGCTGACTCAGCTGGCGCCTCTGAAGCTTCTGCTTGTTTAGCTRAAGCTTGTTTAGAGTTGTTAATGCTGTTGGCGTTCCGTGTAGCCGGAATTTCCAGGTCCAATGGTTCAATGAAGTCCGCATCTCTAGCTTCAGGCTCTTTATCCTCCAAATTCTGATTCTGCTCCTTTCTTGGTCTTCCTGAACGTCGTTTGGCGGGAATTGGGATTACTTGTTCTTGATCCTTTGGTCCTTGACCCTCTGATTCTTGCTCCTCAGATCCTTGATCCCCTGGGCCCGAAATTTCTCGATCTACTGGAACCGTGCTTGCTTCTTGATTCTCTGGCACTGCCTCCTGACCTGTCTGTCTCTCTGATTTGCCTTCTGATAACTTCGATGGACCAGGAGCTTCCTCTGCTGAAGCTGCTGAATCTAAATTAGGGTCTGAAGGCTTCACGATGCTTGGAACTAGAAGTTTAGCCCTTTTTGAGGCGCTTGAAAAATCTGGAAGCGCGTTTCTCTTGGTTTTCAGGATAGCTAAACGGTTTGAACACTTGAATGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATCCTCTTCGAACACCTC</pcr_primer_p1>
		<pcr_primer_p2>ATCAGAATTTGGAGGATAAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGATCCTCTTCGAACACCTCGTACTTCCTGATCCACTCTGGAATTTCTTTGATTACGGCGTGCGGTCCGTACGCTGGTTTTGGAGCTGGAGCTGACTCAGCTGGCGCCTCTGAAGCTTCTGCTTGTTTAGCTAAAGCTTGTTTAGAGTTGTTAATGCTGTTGGCGTTCCGTGTAGCCGGAATTTCCAGGTCCAATGGTTCAATGAAGTCCGCATCTCTAGCTTCAGGCTCTTTATCCTCCAAATTCTGAT</canonical_amplicon>
		<polymorphic_amplicon>AGATCCTCTTCGAACACCTCGTACTTCCTGATCCACTCTGGAATTTCTTTGATTACGGCGTGCGGTCCGTACGCTGGTTTTGGAGCTGGAGCTGACTCAGCTGGCGCCTCTGAAGCTTCTGCTTGTTTAGCTRAAGCTTGTTTAGAGTTGTTAATGCTGTTGGCGTTCCGTGTAGCCGGAATTTCCAGGTCCAATGGTTCAATGAAGTCCGCATCTCTAGCTTCAGGCTCTTTATCCTCCAAATTCTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15038</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>227937</contig_pos>
        <strand>+</strand>
        <context>GGTTCAATGA[A/C]GTCCGCATCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCTGTTGGCGTTCCGTGTAGCCGGAATTTCCAGGTCCAATGGTTCAATGA</left_flank>
        <right_flank>GTCCGCATCTCTAGCTTCAGGCTCTTTATCCTCCAAATTCTGATTCTGCT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCTGATGTGCCAGCCTGATCTTCTATTTCATCTTCCACTCTCTTTTCTTGGACTGGATCCTTATCATATCCACGAGCCACTCTCATTTCTTCGATGTATTGATCCATGAGTTTGAATCGCGGATCTGGTGCCCTGAAATAATTTAAGTTATAGATTTCTAGCTCAAAAGTTCTATATTTTTAGCTAAAGACTTACTTAGGACCGCCCGGTCGATAATGGTCCAGTGGGAAGAGCCAAGGTCTGCCATGTTTGGGAAGATCCTCTTCGAACACCTCGTACTTCCTGATCCACTCTGGAATTTCTTTGATTACGGCGTGCGGTCCGTACGCTGGTTTTGGAGCTGGAGCTGACTCAGCTGGCGCCTCTGAAGCTTCTGCTTGTTTAGCTAAAGCTTGTTTAGAGTTGTTAATGCTGTTGGCGTTCCGTGTAGCCGGAATTTCCAGGTCCAATGGTTCAATGAAGTCCGCATCTCTAGCTTCAGGCTCTTTATCCTCCAAATTCTGATTCTGCTCCTTTCTTGGTCTTCCTGAACGTCGTTTGGCGGGAATTGGGATTACTTGTTCTTGATCCTTTGGTCCTTGACCCTCTGATTCTTGCTCCTCAGATCCTTGATCCCCTGGGCCCGAAATTTCTCGATCTACTGGAACCGTGCTTGCTTCTTGATTCTCTGGCACTGCCTCCTGACCTGTCTGTCTCTCTGATTTGCCTTCTGATAACTTCGATGGACCAGGAGCTTCCTCTGCTGAAGCTGCTGAATCTAAATTAGGGTCTGAAGGCTTCACGATGCTTGGAACTAGAAGTTTAGCCCTTTTTGAGGCGCTTGAAAAATCTGGAAGCGCGTTTCTCTTGGTTTTCAGGATAGCTAAACGGTTTGAACACTTGAATGGGTCTTCTTTTGGCTCAGCTGGTGGTTCTAGAACTTTCTGGACTGTTGATCTTCTGATTGTTGCATTTGGAACAT</canonical>
            <polymorphic>TTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCTGATGTGCCAGCCTGATCTTCTATTTCATCTTCCACTCTCTTTTCTTGGACTGGATCCTTATCATATCCACGAGCCACTCTCATTTCTTCGATGTATTGATCCATGAGTTTGAATCGCGGATCTGGTGCCCTGAAATAATTTAAGTTATAGATTTCTAGCTCAAAAGTTCTATATTTTTAGCTAAAGACTTACTTAGGACCGCCCGGTCGATAATGGTCCAGTGGGAAGAGCCAAGGTCTGCCATGTTTGGGAAGATCCTCTTCGAACACCTCGTACTTCCTGATCCACTCTGGAATTTCTTTGATTACGGCGTGCGGTCCGTACGCTGGTTTTGGAGCTGGAGCTGACTCAGCTGGCGCCTCTGAAGCTTCTGCTTGTTTAGCTAAAGCTTGTTTAGAGTTGTTAATGCTGTTGGCGTTCCGTGTAGCCGGAATTTCCAGGTCCAATGGTTCAATGAMGTCCGCATCTCTAGCTTCAGGCTCTTTATCCTCCAAATTCTGATTCTGCTCCTTTCTTGGTCTTCCTGAACGTCGTTTGGCGGGAATTGGGATTACTTGTTCTTGATCCTTTGGTCCTTGACCCTCTGATTCTTGCTCCTCAGATCCTTGATCCCCTGGGCCCGAAATTTCTCGATCTACTGGAACCGTGCTTGCTTCTTGATTCTCTGGCACTGCCTCCTGACCTGTCTGTCTCTCTGATTTGCCTTCTGATAACTTCGATGGACCAGGAGCTTCCTCTGCTGAAGCTGCTGAATCTAAATTAGGGTCTGAAGGCTTCACGATGCTTGGAACTAGAAGTTTAGCCCTTTTTGAGGCGCTTGAAAAATCTGGAAGCGCGTTTCTCTTGGTTTTCAGGATAGCTAAACGGTTTGAACACTTGAATGGGTCTTCTTTTGGCTCAGCTGGTGGTTCTAGAACTTTCTGGACTGTTGATCTTCTGATTGTTGCATTTGGAACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGAAGCTTCTGCTTGTTTA</pcr_primer_p1>
		<pcr_primer_p2>AGGATCTGAGGAGCAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCTGAAGCTTCTGCTTGTTTAGCTAAAGCTTGTTTAGAGTTGTTAATGCTGTTGGCGTTCCGTGTAGCCGGAATTTCCAGGTCCAATGGTTCAATGAAGTCCGCATCTCTAGCTTCAGGCTCTTTATCCTCCAAATTCTGATTCTGCTCCTTTCTTGGTCTTCCTGAACGTCGTTTGGCGGGAATTGGGATTACTTGTTCTTGATCCTTTGGTCCTTGACCCTCTGATTCTTGCTCCTCAGATCCT</canonical_amplicon>
		<polymorphic_amplicon>TCTGAAGCTTCTGCTTGTTTAGCTAAAGCTTGTTTAGAGTTGTTAATGCTGTTGGCGTTCCGTGTAGCCGGAATTTCCAGGTCCAATGGTTCAATGAMGTCCGCATCTCTAGCTTCAGGCTCTTTATCCTCCAAATTCTGATTCTGCTCCTTTCTTGGTCTTCCTGAACGTCGTTTGGCGGGAATTGGGATTACTTGTTCTTGATCCTTTGGTCCTTGACCCTCTGATTCTTGCTCCTCAGATCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15039</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>228038</contig_pos>
        <strand>+</strand>
        <context>GATTACTTGT[C/T]CTTGATCCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTTTCTTGGTCTTCCTGAACGTCGTTTGGCGGGAATTGGGATTACTTGT</left_flank>
        <right_flank>CTTGATCCTTTGGTCCTTGACCCTCTGATTCTTGCTCCTCAGATCCTTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCATATCCACGAGCCACTCTCATTTCTTCGATGTATTGATCCATGAGTTTGAATCGCGGATCTGGTGCCCTGAAATAATTTAAGTTATAGATTTCTAGCTCAAAAGTTCTATATTTTTAGCTAAAGACTTACTTAGGACCGCCCGGTCGATAATGGTCCAGTGGGAAGAGCCAAGGTCTGCCATGTTTGGGAAGATCCTCTTCGAACACCTCGTACTTCCTGATCCACTCTGGAATTTCTTTGATTACGGCGTGCGGTCCGTACGCTGGTTTTGGAGCTGGAGCTGACTCAGCTGGCGCCTCTGAAGCTTCTGCTTGTTTAGCTAAAGCTTGTTTAGAGTTGTTAATGCTGTTGGCGTTCCGTGTAGCCGGAATTTCCAGGTCCAATGGTTCAATGAAGTCCGCATCTCTAGCTTCAGGCTCTTTATCCTCCAAATTCTGATTCTGCTCCTTTCTTGGTCTTCCTGAACGTCGTTTGGCGGGAATTGGGATTACTTGTTCTTGATCCTTTGGTCCTTGACCCTCTGATTCTTGCTCCTCAGATCCTTGATCCCCTGGGCCCGAAATTTCTCGATCTACTGGAACCGTGCTTGCTTCTTGATTCTCTGGCACTGCCTCCTGACCTGTCTGTCTCTCTGATTTGCCTTCTGATAACTTCGATGGACCAGGAGCTTCCTCTGCTGAAGCTGCTGAATCTAAATTAGGGTCTGAAGGCTTCACGATGCTTGGAACTAGAAGTTTAGCCCTTTTTGAGGCGCTTGAAAAATCTGGAAGCGCGTTTCTCTTGGTTTTCAGGATAGCTAAACGGTTTGAACACTTGAATGGGTCTTCTTTTGGCTCAGCTGGTGGTTCTAGAACTTTCTGGACTGTTGATCTTCTGATTGTTGCATTTGGAACATCTGGAATCGGCTCGGACTTCTTTGCAGGTGTGTCTAGATCTTCTAGTGGATCCAAACCTTCTGATCCTTCTAGTAGATTCTTCACTGAAAAATTGGAAGCT</canonical>
            <polymorphic>ATCATATCCACGAGCCACTCTCATTTCTTCGATGTATTGATCCATGAGTTTGAATCGCGGATCTGGTGCCCTGAAATAATTTAAGTTATAGATTTCTAGCTCAAAAGTTCTATATTTTTAGCTAAAGACTTACTTAGGACCGCCCGGTCGATAATGGTCCAGTGGGAAGAGCCAAGGTCTGCCATGTTTGGGAAGATCCTCTTCGAACACCTCGTACTTCCTGATCCACTCTGGAATTTCTTTGATTACGGCGTGCGGTCCGTACGCTGGTTTTGGAGCTGGAGCTGACTCAGCTGGCGCCTCTGAAGCTTCTGCTTGTTTAGCTAAAGCTTGTTTAGAGTTGTTAATGCTGTTGGCGTTCCGTGTAGCCGGAATTTCCAGGTCCAATGGTTCAATGAAGTCCGCATCTCTAGCTTCAGGCTCTTTATCCTCCAAATTCTGATTCTGCTCCTTTCTTGGTCTTCCTGAACGTCGTTTGGCGGGAATTGGGATTACTTGTYCTTGATCCTTTGGTCCTTGACCCTCTGATTCTTGCTCCTCAGATCCTTGATCCCCTGGGCCCGAAATTTCTCGATCTACTGGAACCGTGCTTGCTTCTTGATTCTCTGGCACTGCCTCCTGACCTGTCTGTCTCTCTGATTTGCCTTCTGATAACTTCGATGGACCAGGAGCTTCCTCTGCTGAAGCTGCTGAATCTAAATTAGGGTCTGAAGGCTTCACGATGCTTGGAACTAGAAGTTTAGCCCTTTTTGAGGCGCTTGAAAAATCTGGAAGCGCGTTTCTCTTGGTTTTCAGGATAGCTAAACGGTTTGAACACTTGAATGGGTCTTCTTTTGGCTCAGCTGGTGGTTCTAGAACTTTCTGGACTGTTGATCTTCTGATTGTTGCATTTGGAACATCTGGAATCGGCTCGGACTTCTTTGCAGGTGTGTCTAGATCTTCTAGTGGATCCAAACCTTCTGATCCTTCTAGTAGATTCTTCACTGAAAAATTGGAAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>233 220 100 69 67 59 50 38 37 33 27 25 21 11 10</canonical_bands>
                <polymorphic_bands>233 220 106 100 67 59 50 38 33 27 25 21 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTCTAGCTTCAGGCTCTTTAT</pcr_primer_p1>
		<pcr_primer_p2>GAAGTTATCAGAAGGCAAATCA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ATCTCTAGCTTCAGGCTCTTTATCCTCCAAATTCTGATTCTGCTCCTTTCTTGGTCTTCCTGAACGTCGTTTGGCGGGAATTGGGATTACTTGTTCTTGATCCTTTGGTCCTTGACCCTCTGATTCTTGCTCCTCAGATCCTTGATCCCCTGGGCCCGAAATTTCTCGATCTACTGGAACCGTGCTTGCTTCTTGATTCTCTGGCACTGCCTCCTGACCTGTCTGTCTCTCTGATTTGCCTTCTGATAACTTC</canonical_amplicon>
		<polymorphic_amplicon>ATCTCTAGCTTCAGGCTCTTTATCCTCCAAATTCTGATTCTGCTCCTTTCTTGGTCTTCCTGAACGTCGTTTGGCGGGAATTGGGATTACTTGTYCTTGATCCTTTGGTCCTTGACCCTCTGATTCTTGCTCCTCAGATCCTTGATCCCCTGGGCCCGAAATTTCTCGATCTACTGGAACCGTGCTTGCTTCTTGATTCTCTGGCACTGCCTCCTGACCTGTCTGTCTCTCTGATTTGCCTTCTGATAACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15040</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>228106</contig_pos>
        <strand>+</strand>
        <context>GGCCCGAAAT[A/T]TCTYGATCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGACCCTCTGATTCTTGCTCCTCAGATCCTTGATCCCCTGGGCCCGAAAT</left_flank>
        <right_flank>TCTCGATCTACTGGAACCGTGCTTGCTTCTTGATTCTCTGGCACTGCCTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCTGAAATAATTTAAGTTATAGATTTCTAGCTCAAAAGTTCTATATTTTTAGCTAAAGACTTACTTAGGACCGCCCGGTCGATAATGGTCCAGTGGGAAGAGCCAAGGTCTGCCATGTTTGGGAAGATCCTCTTCGAACACCTCGTACTTCCTGATCCACTCTGGAATTTCTTTGATTACGGCGTGCGGTCCGTACGCTGGTTTTGGAGCTGGAGCTGACTCAGCTGGCGCCTCTGAAGCTTCTGCTTGTTTAGCTAAAGCTTGTTTAGAGTTGTTAATGCTGTTGGCGTTCCGTGTAGCCGGAATTTCCAGGTCCAATGGTTCAATGAAGTCCGCATCTCTAGCTTCAGGCTCTTTATCCTCCAAATTCTGATTCTGCTCCTTTCTTGGTCTTCCTGAACGTCGTTTGGCGGGAATTGGGATTACTTGTTCTTGATCCTTTGGTCCTTGACCCTCTGATTCTTGCTCCTCAGATCCTTGATCCCCTGGGCCCGAAATTTCTCGATCTACTGGAACCGTGCTTGCTTCTTGATTCTCTGGCACTGCCTCCTGACCTGTCTGTCTCTCTGATTTGCCTTCTGATAACTTCGATGGACCAGGAGCTTCCTCTGCTGAAGCTGCTGAATCTAAATTAGGGTCTGAAGGCTTCACGATGCTTGGAACTAGAAGTTTAGCCCTTTTTGAGGCGCTTGAAAAATCTGGAAGCGCGTTTCTCTTGGTTTTCAGGATAGCTAAACGGTTTGAACACTTGAATGGGTCTTCTTTTGGCTCAGCTGGTGGTTCTAGAACTTTCTGGACTGTTGATCTTCTGATTGTTGCATTTGGAACATCTGGAATCGGCTCGGACTTCTTTGCAGGTGTGTCTAGATCTTCTAGTGGATCCAAACCTTCTGATCCTTCTAGTAGATTCTTCACTGAAAAATTGGAAGCTATGGAAGTCGTATTAGGACCCAGATTGACTAGTGGGTCCTCCACTGGAGAATCGGAAGCAATGGAAGC</canonical>
            <polymorphic>CCCTGAAATAATTTAAGTTATAGATTTCTAGCTCAAAAGTTCTATATTTTTAGCTAAAGACTTACTTAGGACCGCCCGGTCGATAATGGTCCAGTGGGAAGAGCCAAGGTCTGCCATGTTTGGGAAGATCCTCTTCGAACACCTCGTACTTCCTGATCCACTCTGGAATTTCTTTGATTACGGCGTGCGGTCCGTACGCTGGTTTTGGAGCTGGAGCTGACTCAGCTGGCGCCTCTGAAGCTTCTGCTTGTTTAGCTAAAGCTTGTTTAGAGTTGTTAATGCTGTTGGCGTTCCGTGTAGCCGGAATTTCCAGGTCCAATGGTTCAATGAAGTCCGCATCTCTAGCTTCAGGCTCTTTATCCTCCAAATTCTGATTCTGCTCCTTTCTTGGTCTTCCTGAACGTCGTTTGGCGGGAATTGGGATTACTTGTTCTTGATCCTTTGGTCCTTGACCCTCTGATTCTTGCTCCTCAGATCCTTGATCCCCTGGGCCCGAAATWTCTCGATCTACTGGAACCGTGCTTGCTTCTTGATTCTCTGGCACTGCCTCCTGACCTGTCTGTCTCTCTGATTTGCCTTCTGATAACTTCGATGGACCAGGAGCTTCCTCTGCTGAAGCTGCTGAATCTAAATTAGGGTCTGAAGGCTTCACGATGCTTGGAACTAGAAGTTTAGCCCTTTTTGAGGCGCTTGAAAAATCTGGAAGCGCGTTTCTCTTGGTTTTCAGGATAGCTAAACGGTTTGAACACTTGAATGGGTCTTCTTTTGGCTCAGCTGGTGGTTCTAGAACTTTCTGGACTGTTGATCTTCTGATTGTTGCATTTGGAACATCTGGAATCGGCTCGGACTTCTTTGCAGGTGTGTCTAGATCTTCTAGTGGATCCAAACCTTCTGATCCTTCTAGTAGATTCTTCACTGAAAAATTGGAAGCTATGGAAGTCGTATTAGGACCCAGATTGACTAGTGGGTCCTCCACTGGAGAATCGGAAGCAATGGAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>504 166 138 130 62</canonical_bands>
                <polymorphic_bands>634 166 138 62</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>291 157 138 134 81 79 62 49 9</canonical_bands>
                <polymorphic_bands>291 215 157 138 79 62 49 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTCTAGCTTCAGGCTCTTTAT</pcr_primer_p1>
		<pcr_primer_p2>GAAGTTATCAGAAGGCAAATCA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ATCTCTAGCTTCAGGCTCTTTATCCTCCAAATTCTGATTCTGCTCCTTTCTTGGTCTTCCTGAACGTCGTTTGGCGGGAATTGGGATTACTTGTTCTTGATCCTTTGGTCCTTGACCCTCTGATTCTTGCTCCTCAGATCCTTGATCCCCTGGGCCCGAAATTTCTCGATCTACTGGAACCGTGCTTGCTTCTTGATTCTCTGGCACTGCCTCCTGACCTGTCTGTCTCTCTGATTTGCCTTCTGATAACTTC</canonical_amplicon>
		<polymorphic_amplicon>ATCTCTAGCTTCAGGCTCTTTATCCTCCAAATTCTGATTCTGCTCCTTTCTTGGTCTTCCTGAACGTCGTTTGGCGGGAATTGGGATTACTTGTTCTTGATCCTTTGGTCCTTGACCCTCTGATTCTTGCTCCTCAGATCCTTGATCCCCTGGGCCCGAAATWTCTCGATCTACTGGAACCGTGCTTGCTTCTTGATTCTCTGGCACTGCCTCCTGACCTGTCTGTCTCTCTGATTTGCCTTCTGATAACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15041</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>228110</contig_pos>
        <strand>+</strand>
        <context>CGAAATWTCT[C/T]GATCTACTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTCTGATTCTTGCTCCTCAGATCCTTGATCCCCTGGGCCCGAAATTTCT</left_flank>
        <right_flank>GATCTACTGGAACCGTGCTTGCTTCTTGATTCTCTGGCACTGCCTCCTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAATAATTTAAGTTATAGATTTCTAGCTCAAAAGTTCTATATTTTTAGCTAAAGACTTACTTAGGACCGCCCGGTCGATAATGGTCCAGTGGGAAGAGCCAAGGTCTGCCATGTTTGGGAAGATCCTCTTCGAACACCTCGTACTTCCTGATCCACTCTGGAATTTCTTTGATTACGGCGTGCGGTCCGTACGCTGGTTTTGGAGCTGGAGCTGACTCAGCTGGCGCCTCTGAAGCTTCTGCTTGTTTAGCTAAAGCTTGTTTAGAGTTGTTAATGCTGTTGGCGTTCCGTGTAGCCGGAATTTCCAGGTCCAATGGTTCAATGAAGTCCGCATCTCTAGCTTCAGGCTCTTTATCCTCCAAATTCTGATTCTGCTCCTTTCTTGGTCTTCCTGAACGTCGTTTGGCGGGAATTGGGATTACTTGTTCTTGATCCTTTGGTCCTTGACCCTCTGATTCTTGCTCCTCAGATCCTTGATCCCCTGGGCCCGAAATTTCTCGATCTACTGGAACCGTGCTTGCTTCTTGATTCTCTGGCACTGCCTCCTGACCTGTCTGTCTCTCTGATTTGCCTTCTGATAACTTCGATGGACCAGGAGCTTCCTCTGCTGAAGCTGCTGAATCTAAATTAGGGTCTGAAGGCTTCACGATGCTTGGAACTAGAAGTTTAGCCCTTTTTGAGGCGCTTGAAAAATCTGGAAGCGCGTTTCTCTTGGTTTTCAGGATAGCTAAACGGTTTGAACACTTGAATGGGTCTTCTTTTGGCTCAGCTGGTGGTTCTAGAACTTTCTGGACTGTTGATCTTCTGATTGTTGCATTTGGAACATCTGGAATCGGCTCGGACTTCTTTGCAGGTGTGTCTAGATCTTCTAGTGGATCCAAACCTTCTGATCCTTCTAGTAGATTCTTCACTGAAAAATTGGAAGCTATGGAAGTCGTATTAGGACCCAGATTGACTAGTGGGTCCTCCACTGGAGAATCGGAAGCAATGGAAGCCTCG</canonical>
            <polymorphic>GAAATAATTTAAGTTATAGATTTCTAGCTCAAAAGTTCTATATTTTTAGCTAAAGACTTACTTAGGACCGCCCGGTCGATAATGGTCCAGTGGGAAGAGCCAAGGTCTGCCATGTTTGGGAAGATCCTCTTCGAACACCTCGTACTTCCTGATCCACTCTGGAATTTCTTTGATTACGGCGTGCGGTCCGTACGCTGGTTTTGGAGCTGGAGCTGACTCAGCTGGCGCCTCTGAAGCTTCTGCTTGTTTAGCTAAAGCTTGTTTAGAGTTGTTAATGCTGTTGGCGTTCCGTGTAGCCGGAATTTCCAGGTCCAATGGTTCAATGAAGTCCGCATCTCTAGCTTCAGGCTCTTTATCCTCCAAATTCTGATTCTGCTCCTTTCTTGGTCTTCCTGAACGTCGTTTGGCGGGAATTGGGATTACTTGTTCTTGATCCTTTGGTCCTTGACCCTCTGATTCTTGCTCCTCAGATCCTTGATCCCCTGGGCCCGAAATTTCTYGATCTACTGGAACCGTGCTTGCTTCTTGATTCTCTGGCACTGCCTCCTGACCTGTCTGTCTCTCTGATTTGCCTTCTGATAACTTCGATGGACCAGGAGCTTCCTCTGCTGAAGCTGCTGAATCTAAATTAGGGTCTGAAGGCTTCACGATGCTTGGAACTAGAAGTTTAGCCCTTTTTGAGGCGCTTGAAAAATCTGGAAGCGCGTTTCTCTTGGTTTTCAGGATAGCTAAACGGTTTGAACACTTGAATGGGTCTTCTTTTGGCTCAGCTGGTGGTTCTAGAACTTTCTGGACTGTTGATCTTCTGATTGTTGCATTTGGAACATCTGGAATCGGCTCGGACTTCTTTGCAGGTGTGTCTAGATCTTCTAGTGGATCCAAACCTTCTGATCCTTCTAGTAGATTCTTCACTGAAAAATTGGAAGCTATGGAAGTCGTATTAGGACCCAGATTGACTAGTGGGTCCTCCACTGGAGAATCGGAAGCAATGGAAGCCTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>414 368 86 77 55</canonical_bands>
                <polymorphic_bands>454 414 77 55</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTCTAGCTTCAGGCTCTTTAT</pcr_primer_p1>
		<pcr_primer_p2>GAAGTTATCAGAAGGCAAATCA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ATCTCTAGCTTCAGGCTCTTTATCCTCCAAATTCTGATTCTGCTCCTTTCTTGGTCTTCCTGAACGTCGTTTGGCGGGAATTGGGATTACTTGTTCTTGATCCTTTGGTCCTTGACCCTCTGATTCTTGCTCCTCAGATCCTTGATCCCCTGGGCCCGAAATTTCTCGATCTACTGGAACCGTGCTTGCTTCTTGATTCTCTGGCACTGCCTCCTGACCTGTCTGTCTCTCTGATTTGCCTTCTGATAACTTC</canonical_amplicon>
		<polymorphic_amplicon>ATCTCTAGCTTCAGGCTCTTTATCCTCCAAATTCTGATTCTGCTCCTTTCTTGGTCTTCCTGAACGTCGTTTGGCGGGAATTGGGATTACTTGTTCTTGATCCTTTGGTCCTTGACCCTCTGATTCTTGCTCCTCAGATCCTTGATCCCCTGGGCCCGAAATTTCTYGATCTACTGGAACCGTGCTTGCTTCTTGATTCTCTGGCACTGCCTCCTGACCTGTCTGTCTCTCTGATTTGCCTTCTGATAACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15042</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>228174</contig_pos>
        <strand>+</strand>
        <context>GTCTGTCTCT[C/T]TGATTTGCCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTGCTTGCTTCTTGATTCTCTGGCACTGCCTCCTGACCTGTCTGTCTCT</left_flank>
        <right_flank>TGATTTGCCTTCTGATAACTTCGATGGACCAGGAGCTTCCTCTGCTGAAG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGACCGCCCGGTCGATAATGGTCCAGTGGGAAGAGCCAAGGTCTGCCATGTTTGGGAAGATCCTCTTCGAACACCTCGTACTTCCTGATCCACTCTGGAATTTCTTTGATTACGGCGTGCGGTCCGTACGCTGGTTTTGGAGCTGGAGCTGACTCAGCTGGCGCCTCTGAAGCTTCTGCTTGTTTAGCTAAAGCTTGTTTAGAGTTGTTAATGCTGTTGGCGTTCCGTGTAGCCGGAATTTCCAGGTCCAATGGTTCAATGAAGTCCGCATCTCTAGCTTCAGGCTCTTTATCCTCCAAATTCTGATTCTGCTCCTTTCTTGGTCTTCCTGAACGTCGTTTGGCGGGAATTGGGATTACTTGTTCTTGATCCTTTGGTCCTTGACCCTCTGATTCTTGCTCCTCAGATCCTTGATCCCCTGGGCCCGAAATTTCTCGATCTACTGGAACCGTGCTTGCTTCTTGATTCTCTGGCACTGCCTCCTGACCTGTCTGTCTCTCTGATTTGCCTTCTGATAACTTCGATGGACCAGGAGCTTCCTCTGCTGAAGCTGCTGAATCTAAATTAGGGTCTGAAGGCTTCACGATGCTTGGAACTAGAAGTTTAGCCCTTTTTGAGGCGCTTGAAAAATCTGGAAGCGCGTTTCTCTTGGTTTTCAGGATAGCTAAACGGTTTGAACACTTGAATGGGTCTTCTTTTGGCTCAGCTGGTGGTTCTAGAACTTTCTGGACTGTTGATCTTCTGATTGTTGCATTTGGAACATCTGGAATCGGCTCGGACTTCTTTGCAGGTGTGTCTAGATCTTCTAGTGGATCCAAACCTTCTGATCCTTCTAGTAGATTCTTCACTGAAAAATTGGAAGCTATGGAAGTCGTATTAGGACCCAGATTGACTAGTGGGTCCTCCACTGGAGAATCGGAAGCAATGGAAGCCTCGGAAGTCGAAACCGGAGCATACTGATCTAGATCCATGGATTCCGGTTCATCCAGATTGACTAGCT</canonical>
            <polymorphic>GGACCGCCCGGTCGATAATGGTCCAGTGGGAAGAGCCAAGGTCTGCCATGTTTGGGAAGATCCTCTTCGAACACCTCGTACTTCCTGATCCACTCTGGAATTTCTTTGATTACGGCGTGCGGTCCGTACGCTGGTTTTGGAGCTGGAGCTGACTCAGCTGGCGCCTCTGAAGCTTCTGCTTGTTTAGCTAAAGCTTGTTTAGAGTTGTTAATGCTGTTGGCGTTCCGTGTAGCCGGAATTTCCAGGTCCAATGGTTCAATGAAGTCCGCATCTCTAGCTTCAGGCTCTTTATCCTCCAAATTCTGATTCTGCTCCTTTCTTGGTCTTCCTGAACGTCGTTTGGCGGGAATTGGGATTACTTGTTCTTGATCCTTTGGTCCTTGACCCTCTGATTCTTGCTCCTCAGATCCTTGATCCCCTGGGCCCGAAATTTCTCGATCTACTGGAACCGTGCTTGCTTCTTGATTCTCTGGCACTGCCTCCTGACCTGTCTGTCTCTYTGATTTGCCTTCTGATAACTTCGATGGACCAGGAGCTTCCTCTGCTGAAGCTGCTGAATCTAAATTAGGGTCTGAAGGCTTCACGATGCTTGGAACTAGAAGTTTAGCCCTTTTTGAGGCGCTTGAAAAATCTGGAAGCGCGTTTCTCTTGGTTTTCAGGATAGCTAAACGGTTTGAACACTTGAATGGGTCTTCTTTTGGCTCAGCTGGTGGTTCTAGAACTTTCTGGACTGTTGATCTTCTGATTGTTGCATTTGGAACATCTGGAATCGGCTCGGACTTCTTTGCAGGTGTGTCTAGATCTTCTAGTGGATCCAAACCTTCTGATCCTTCTAGTAGATTCTTCACTGAAAAATTGGAAGCTATGGAAGTCGTATTAGGACCCAGATTGACTAGTGGGTCCTCCACTGGAGAATCGGAAGCAATGGAAGCCTCGGAAGTCGAAACCGGAGCATACTGATCTAGATCCATGGATTCCGGTTCATCCAGATTGACTAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>170 168 136 96 93 86 64 60 48 34 18 15 12</canonical_bands>
                <polymorphic_bands>170 168 136 108 93 86 64 60 48 34 18 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGCTTGCTTCTTGATTCTC</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAGACCCATTCAAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTGCTTGCTTCTTGATTCTCTGGCACTGCCTCCTGACCTGTCTGTCTCTCTGATTTGCCTTCTGATAACTTCGATGGACCAGGAGCTTCCTCTGCTGAAGCTGCTGAATCTAAATTAGGGTCTGAAGGCTTCACGATGCTTGGAACTAGAAGTTTAGCCCTTTTTGAGGCGCTTGAAAAATCTGGAAGCGCGTTTCTCTTGGTTTTCAGGATAGCTAAACGGTTTGAACACTTGAATGGGTCTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>GTGCTTGCTTCTTGATTCTCTGGCACTGCCTCCTGACCTGTCTGTCTCTYTGATTTGCCTTCTGATAACTTCGATGGACCAGGAGCTTCCTCTGCTGAAGCTGCTGAATCTAAATTAGGGTCTGAAGGCTTCACGATGCTTGGAACTAGAAGTTTAGCCCTTTTTGAGGCGCTTGAAAAATCTGGAAGCGCGTTTCTCTTGGTTTTCAGGATAGCTAAACGGTTTGAACACTTGAATGGGTCTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15043</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>229311</contig_pos>
        <strand>+</strand>
        <context>CTCCAAATTC[A/T]GATTCTTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTC</left_flank>
        <right_flank>GATTCTTCTTCTTTCTTGGCCTTCCTGGACGTCGTTTCGCGGGAAGTGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAGCATTTTTCTTTGCTCCAATTGGACTTGATTGGTCCATAGCTTTTGTTTAGACGATCTAGCTTGAATATCTCGAAGACTTCCTCCAGCCTTTGGTCCAAAATCCATTGCCATCAGTTTTTCGGCCTCAGTCTGCAATATTTATGAAAACCCTTATCAGCTAGCTAGATACCAATGAATGCCTTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATTCCGTCCTTCCTATCCACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCTTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTCTGATTCTTCTTCTTTCTTGGCCTTCCTGGACGTCGTTTCGCGGGAAGTGGAAGCGCTGAACTTTGGTTTTTGTGTTCTAGATCCTCTGATCCTTGACTTCCTGGAACCACCTGCGGCTCTGTCTGTGGCTCTGATCTGCCTTCTGAAGTCTCCGGAACAGCTTCTTCCGCTGAATCCAAATTTCGAATGTTGTCTTCTGACGCCTCCGATGGACCGGGAGCTTCGGAAGGTTCCACGATGATCGAAGGAAGCGCTTTTTCTGCTGGATCTGACTCATTTGGATCTTTTGGAGCTTCTGCCGGGAAGTTCTCGCTCCTCCATTCGTTCATTTTCCTTAGCTGCTCCTCATTCAACACATGAATTCCACAATGTTCATCGCCTCCCAGTGGTCCGCCTTTTGAAAATTCCAAAATTGCTCCGATCCTCTCTATGCATGCATTTTTGGCATTTTCGAAAAGATCCGGTGGCACATCCACATCTTCTAGATCACCCATCAATGTT</canonical>
            <polymorphic>TCTAGCATTTTTCTTTGCTCCAATTGGACTTGATTGGTCCATAGCTTTTGTTTAGACGATCTAGCTTGAATATCTCGAAGACTTCCTCCAGCCTTTGGTCCAAAATCCATTGCCATCAGTTTTTCGGCCTCAGTCTGCAATATTTATGAAAACCCTTATCAGCTAGCTAGATACCAATGAATGCCTTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATTCCGTCCTTCCTATCCACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCTTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTCWGATTCTTCTTCTTTCTTGGCCTTCCTGGACGTCGTTTCGCGGGAAGTGGAAGCGCTGAACTTTGGTTTTTGTGTTCTAGATCCTCTGATCCTTGACTTCCTGGAACCACCTGCGGCTCTGTCTGTGGCTCTGATCTGCCTTCTGAAGTCTCCGGAACAGCTTCTTCCGCTGAATCCAAATTTCGAATGTTGTCTTCTGACGCCTCCGATGGACCGGGAGCTTCGGAAGGTTCCACGATGATCGAAGGAAGCGCTTTTTCTGCTGGATCTGACTCATTTGGATCTTTTGGAGCTTCTGCCGGGAAGTTCTCGCTCCTCCATTCGTTCATTTTCCTTAGCTGCTCCTCATTCAACACATGAATTCCACAATGTTCATCGCCTCCCAGTGGTCCGCCTTTTGAAAATTCCAAAATTGCTCCGATCCTCTCTATGCATGCATTTTTGGCATTTTCGAAAAGATCCGGTGGCACATCCACATCTTCTAGATCACCCATCAATGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCTTGTTTTGAGTTGTCAAT</pcr_primer_p1>
		<pcr_primer_p2>AGATCAGAGCCACAGACAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTCTGATTCTTCTTCTTTCTTGGCCTTCCTGGACGTCGTTTCGCGGGAAGTGGAAGCGCTGAACTTTGGTTTTTGTGTTCTAGATCCTCTGATCCTTGACTTCCTGGAACCACCTGCGGCTCTGTCTGTGGCTCTGATCT</canonical_amplicon>
		<polymorphic_amplicon>GAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTCWGATTCTTCTTCTTTCTTGGCCTTCCTGGACGTCGTTTCGCGGGAAGTGGAAGCGCTGAACTTTGGTTTTTGTGTTCTAGATCCTCTGATCCTTGACTTCCTGGAACCACCTGCGGCTCTGTCTGTGGCTCTGATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15044</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>229261</contig_pos>
        <strand>+</strand>
        <context>AGGTCCAATR[A/G]TTCTATGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATG</left_flank>
        <right_flank>TTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTCGCTACTCGGTTGGATATCGACAGCTTTGGATGATCCACTGATTCTTCTAGCATTTTTCTTTGCTCCAATTGGACTTGATTGGTCCATAGCTTTTGTTTAGACGATCTAGCTTGAATATCTCGAAGACTTCCTCCAGCCTTTGGTCCAAAATCCATTGCCATCAGTTTTTCGGCCTCAGTCTGCAATATTTATGAAAACCCTTATCAGCTAGCTAGATACCAATGAATGCCTTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATTCCGTCCTTCCTATCCACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCTTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTCTGATTCTTCTTCTTTCTTGGCCTTCCTGGACGTCGTTTCGCGGGAAGTGGAAGCGCTGAACTTTGGTTTTTGTGTTCTAGATCCTCTGATCCTTGACTTCCTGGAACCACCTGCGGCTCTGTCTGTGGCTCTGATCTGCCTTCTGAAGTCTCCGGAACAGCTTCTTCCGCTGAATCCAAATTTCGAATGTTGTCTTCTGACGCCTCCGATGGACCGGGAGCTTCGGAAGGTTCCACGATGATCGAAGGAAGCGCTTTTTCTGCTGGATCTGACTCATTTGGATCTTTTGGAGCTTCTGCCGGGAAGTTCTCGCTCCTCCATTCGTTCATTTTCCTTAGCTGCTCCTCATTCAACACATGAATTCCACAATGTTCATCGCCTCCCAGTGGTCCGCCTTTTGAAAATTCCAAAATTGCTCCGATCCTCTCTATGCATGCATTTTTGGCATTTT</canonical>
            <polymorphic>TCCTCGCTACTCGGTTGGATATCGACAGCTTTGGATGATCCACTGATTCTTCTAGCATTTTTCTTTGCTCCAATTGGACTTGATTGGTCCATAGCTTTTGTTTAGACGATCTAGCTTGAATATCTCGAAGACTTCCTCCAGCCTTTGGTCCAAAATCCATTGCCATCAGTTTTTCGGCCTCAGTCTGCAATATTTATGAAAACCCTTATCAGCTAGCTAGATACCAATGAATGCCTTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATTCCGTCCTTCCTATCCACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCTTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGRTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTCTGATTCTTCTTCTTTCTTGGCCTTCCTGGACGTCGTTTCGCGGGAAGTGGAAGCGCTGAACTTTGGTTTTTGTGTTCTAGATCCTCTGATCCTTGACTTCCTGGAACCACCTGCGGCTCTGTCTGTGGCTCTGATCTGCCTTCTGAAGTCTCCGGAACAGCTTCTTCCGCTGAATCCAAATTTCGAATGTTGTCTTCTGACGCCTCCGATGGACCGGGAGCTTCGGAAGGTTCCACGATGATCGAAGGAAGCGCTTTTTCTGCTGGATCTGACTCATTTGGATCTTTTGGAGCTTCTGCCGGGAAGTTCTCGCTCCTCCATTCGTTCATTTTCCTTAGCTGCTCCTCATTCAACACATGAATTCCACAATGTTCATCGCCTCCCAGTGGTCCGCCTTTTGAAAATTCCAAAATTGCTCCGATCCTCTCTATGCATGCATTTTTGGCATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCTTGTTTTGAGTTGTCAAT</pcr_primer_p1>
		<pcr_primer_p2>AGATCAGAGCCACAGACAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTCTGATTCTTCTTCTTTCTTGGCCTTCCTGGACGTCGTTTCGCGGGAAGTGGAAGCGCTGAACTTTGGTTTTTGTGTTCTAGATCCTCTGATCCTTGACTTCCTGGAACCACCTGCGGCTCTGTCTGTGGCTCTGATCT</canonical_amplicon>
		<polymorphic_amplicon>GAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGRTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTCTGATTCTTCTTCTTTCTTGGCCTTCCTGGACGTCGTTTCGCGGGAAGTGGAAGCGCTGAACTTTGGTTTTTGTGTTCTAGATCCTCTGATCCTTGACTTCCTGGAACCACCTGCGGCTCTGTCTGTGGCTCTGATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15045</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>229260</contig_pos>
        <strand>+</strand>
        <context>CAGGTCCAAT[A/G]RTTCTATGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAAT</left_flank>
        <right_flank>GTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCTCGCTACTCGGTTGGATATCGACAGCTTTGGATGATCCACTGATTCTTCTAGCATTTTTCTTTGCTCCAATTGGACTTGATTGGTCCATAGCTTTTGTTTAGACGATCTAGCTTGAATATCTCGAAGACTTCCTCCAGCCTTTGGTCCAAAATCCATTGCCATCAGTTTTTCGGCCTCAGTCTGCAATATTTATGAAAACCCTTATCAGCTAGCTAGATACCAATGAATGCCTTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATTCCGTCCTTCCTATCCACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCTTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTCTGATTCTTCTTCTTTCTTGGCCTTCCTGGACGTCGTTTCGCGGGAAGTGGAAGCGCTGAACTTTGGTTTTTGTGTTCTAGATCCTCTGATCCTTGACTTCCTGGAACCACCTGCGGCTCTGTCTGTGGCTCTGATCTGCCTTCTGAAGTCTCCGGAACAGCTTCTTCCGCTGAATCCAAATTTCGAATGTTGTCTTCTGACGCCTCCGATGGACCGGGAGCTTCGGAAGGTTCCACGATGATCGAAGGAAGCGCTTTTTCTGCTGGATCTGACTCATTTGGATCTTTTGGAGCTTCTGCCGGGAAGTTCTCGCTCCTCCATTCGTTCATTTTCCTTAGCTGCTCCTCATTCAACACATGAATTCCACAATGTTCATCGCCTCCCAGTGGTCCGCCTTTTGAAAATTCCAAAATTGCTCCGATCCTCTCTATGCATGCATTTTTGGCATTT</canonical>
            <polymorphic>TTCCTCGCTACTCGGTTGGATATCGACAGCTTTGGATGATCCACTGATTCTTCTAGCATTTTTCTTTGCTCCAATTGGACTTGATTGGTCCATAGCTTTTGTTTAGACGATCTAGCTTGAATATCTCGAAGACTTCCTCCAGCCTTTGGTCCAAAATCCATTGCCATCAGTTTTTCGGCCTCAGTCTGCAATATTTATGAAAACCCTTATCAGCTAGCTAGATACCAATGAATGCCTTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATTCCGTCCTTCCTATCCACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCTTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATRGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTCTGATTCTTCTTCTTTCTTGGCCTTCCTGGACGTCGTTTCGCGGGAAGTGGAAGCGCTGAACTTTGGTTTTTGTGTTCTAGATCCTCTGATCCTTGACTTCCTGGAACCACCTGCGGCTCTGTCTGTGGCTCTGATCTGCCTTCTGAAGTCTCCGGAACAGCTTCTTCCGCTGAATCCAAATTTCGAATGTTGTCTTCTGACGCCTCCGATGGACCGGGAGCTTCGGAAGGTTCCACGATGATCGAAGGAAGCGCTTTTTCTGCTGGATCTGACTCATTTGGATCTTTTGGAGCTTCTGCCGGGAAGTTCTCGCTCCTCCATTCGTTCATTTTCCTTAGCTGCTCCTCATTCAACACATGAATTCCACAATGTTCATCGCCTCCCAGTGGTCCGCCTTTTGAAAATTCCAAAATTGCTCCGATCCTCTCTATGCATGCATTTTTGGCATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCTTGTTTTGAGTTGTCAAT</pcr_primer_p1>
		<pcr_primer_p2>AGATCAGAGCCACAGACAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTCTGATTCTTCTTCTTTCTTGGCCTTCCTGGACGTCGTTTCGCGGGAAGTGGAAGCGCTGAACTTTGGTTTTTGTGTTCTAGATCCTCTGATCCTTGACTTCCTGGAACCACCTGCGGCTCTGTCTGTGGCTCTGATCT</canonical_amplicon>
		<polymorphic_amplicon>GAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATRGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTCTGATTCTTCTTCTTTCTTGGCCTTCCTGGACGTCGTTTCGCGGGAAGTGGAAGCGCTGAACTTTGGTTTTTGTGTTCTAGATCCTCTGATCCTTGACTTCCTGGAACCACCTGCGGCTCTGTCTGTGGCTCTGATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15046</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>229221</contig_pos>
        <strand>+</strand>
        <context>GTTGTCAATG[C/T]TGTTGGCGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATG</left_flank>
        <right_flank>TGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGCCTCGGAAAGCACGACTGGCTCCAACTCCTTGGATTTCCTCGCTACTCGGTTGGATATCGACAGCTTTGGATGATCCACTGATTCTTCTAGCATTTTTCTTTGCTCCAATTGGACTTGATTGGTCCATAGCTTTTGTTTAGACGATCTAGCTTGAATATCTCGAAGACTTCCTCCAGCCTTTGGTCCAAAATCCATTGCCATCAGTTTTTCGGCCTCAGTCTGCAATATTTATGAAAACCCTTATCAGCTAGCTAGATACCAATGAATGCCTTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATTCCGTCCTTCCTATCCACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCTTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTCTGATTCTTCTTCTTTCTTGGCCTTCCTGGACGTCGTTTCGCGGGAAGTGGAAGCGCTGAACTTTGGTTTTTGTGTTCTAGATCCTCTGATCCTTGACTTCCTGGAACCACCTGCGGCTCTGTCTGTGGCTCTGATCTGCCTTCTGAAGTCTCCGGAACAGCTTCTTCCGCTGAATCCAAATTTCGAATGTTGTCTTCTGACGCCTCCGATGGACCGGGAGCTTCGGAAGGTTCCACGATGATCGAAGGAAGCGCTTTTTCTGCTGGATCTGACTCATTTGGATCTTTTGGAGCTTCTGCCGGGAAGTTCTCGCTCCTCCATTCGTTCATTTTCCTTAGCTGCTCCTCATTCAACACATGAATTCCACAATGTTCATCGCCTCCCAGTGGTCCGCCTTTTGAAAATTCCAAA</canonical>
            <polymorphic>GAAGCCTCGGAAAGCACGACTGGCTCCAACTCCTTGGATTTCCTCGCTACTCGGTTGGATATCGACAGCTTTGGATGATCCACTGATTCTTCTAGCATTTTTCTTTGCTCCAATTGGACTTGATTGGTCCATAGCTTTTGTTTAGACGATCTAGCTTGAATATCTCGAAGACTTCCTCCAGCCTTTGGTCCAAAATCCATTGCCATCAGTTTTTCGGCCTCAGTCTGCAATATTTATGAAAACCCTTATCAGCTAGCTAGATACCAATGAATGCCTTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATTCCGTCCTTCCTATCCACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCTTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGYTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTCTGATTCTTCTTCTTTCTTGGCCTTCCTGGACGTCGTTTCGCGGGAAGTGGAAGCGCTGAACTTTGGTTTTTGTGTTCTAGATCCTCTGATCCTTGACTTCCTGGAACCACCTGCGGCTCTGTCTGTGGCTCTGATCTGCCTTCTGAAGTCTCCGGAACAGCTTCTTCCGCTGAATCCAAATTTCGAATGTTGTCTTCTGACGCCTCCGATGGACCGGGAGCTTCGGAAGGTTCCACGATGATCGAAGGAAGCGCTTTTTCTGCTGGATCTGACTCATTTGGATCTTTTGGAGCTTCTGCCGGGAAGTTCTCGCTCCTCCATTCGTTCATTTTCCTTAGCTGCTCCTCATTCAACACATGAATTCCACAATGTTCATCGCCTCCCAGTGGTCCGCCTTTTGAAAATTCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTCTCTCCTTTTTGACTGTT</pcr_primer_p1>
		<pcr_primer_p2>GAATTTGGAGGATAAAGAGTCTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCTTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTC</canonical_amplicon>
		<polymorphic_amplicon>ACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCTTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGYTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15047</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>229170</contig_pos>
        <strand>+</strand>
        <context>TTGGACTGGA[A/T]CCTTATCATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGCCAGCTTGATCTTCTATTTTATCTTCGACTCTCTTTTCTTGGACTGGA</left_flank>
        <right_flank>CCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTGATCTGATAGTTCTGATCCTTCTGGAATATCCATCACTGGAAAATCGGAAGCCTCGGAAAGCACGACTGGCTCCAACTCCTTGGATTTCCTCGCTACTCGGTTGGATATCGACAGCTTTGGATGATCCACTGATTCTTCTAGCATTTTTCTTTGCTCCAATTGGACTTGATTGGTCCATAGCTTTTGTTTAGACGATCTAGCTTGAATATCTCGAAGACTTCCTCCAGCCTTTGGTCCAAAATCCATTGCCATCAGTTTTTCGGCCTCAGTCTGCAATATTTATGAAAACCCTTATCAGCTAGCTAGATACCAATGAATGCCTTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATTCCGTCCTTCCTATCCACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCTTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTCTGATTCTTCTTCTTTCTTGGCCTTCCTGGACGTCGTTTCGCGGGAAGTGGAAGCGCTGAACTTTGGTTTTTGTGTTCTAGATCCTCTGATCCTTGACTTCCTGGAACCACCTGCGGCTCTGTCTGTGGCTCTGATCTGCCTTCTGAAGTCTCCGGAACAGCTTCTTCCGCTGAATCCAAATTTCGAATGTTGTCTTCTGACGCCTCCGATGGACCGGGAGCTTCGGAAGGTTCCACGATGATCGAAGGAAGCGCTTTTTCTGCTGGATCTGACTCATTTGGATCTTTTGGAGCTTCTGCCGGGAAGTTCTCGCTCCTCCATTCGTTCATTTTCCTTAGCTGCTCCTCATTCAACACATGA</canonical>
            <polymorphic>AGCTGATCTGATAGTTCTGATCCTTCTGGAATATCCATCACTGGAAAATCGGAAGCCTCGGAAAGCACGACTGGCTCCAACTCCTTGGATTTCCTCGCTACTCGGTTGGATATCGACAGCTTTGGATGATCCACTGATTCTTCTAGCATTTTTCTTTGCTCCAATTGGACTTGATTGGTCCATAGCTTTTGTTTAGACGATCTAGCTTGAATATCTCGAAGACTTCCTCCAGCCTTTGGTCCAAAATCCATTGCCATCAGTTTTTCGGCCTCAGTCTGCAATATTTATGAAAACCCTTATCAGCTAGCTAGATACCAATGAATGCCTTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATTCCGTCCTTCCTATCCACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCTTCGACTCTCTTTTCTTGGACTGGAWCCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTCTGATTCTTCTTCTTTCTTGGCCTTCCTGGACGTCGTTTCGCGGGAAGTGGAAGCGCTGAACTTTGGTTTTTGTGTTCTAGATCCTCTGATCCTTGACTTCCTGGAACCACCTGCGGCTCTGTCTGTGGCTCTGATCTGCCTTCTGAAGTCTCCGGAACAGCTTCTTCCGCTGAATCCAAATTTCGAATGTTGTCTTCTGACGCCTCCGATGGACCGGGAGCTTCGGAAGGTTCCACGATGATCGAAGGAAGCGCTTTTTCTGCTGGATCTGACTCATTTGGATCTTTTGGAGCTTCTGCCGGGAAGTTCTCGCTCCTCCATTCGTTCATTTTCCTTAGCTGCTCCTCATTCAACACATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTCTCTCCTTTTTGACTGTT</pcr_primer_p1>
		<pcr_primer_p2>GAATTTGGAGGATAAAGAGTCTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCTTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTC</canonical_amplicon>
		<polymorphic_amplicon>ACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCTTCGACTCTCTTTTCTTGGACTGGAWCCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15048</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>229148</contig_pos>
        <strand>+</strand>
        <context>TTTYATCWTC[C/G]ACTCTCTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCTTC</left_flank>
        <right_flank>ACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCGGTTCATCCAGATTGACTAGCTGATCTGATAGTTCTGATCCTTCTGGAATATCCATCACTGGAAAATCGGAAGCCTCGGAAAGCACGACTGGCTCCAACTCCTTGGATTTCCTCGCTACTCGGTTGGATATCGACAGCTTTGGATGATCCACTGATTCTTCTAGCATTTTTCTTTGCTCCAATTGGACTTGATTGGTCCATAGCTTTTGTTTAGACGATCTAGCTTGAATATCTCGAAGACTTCCTCCAGCCTTTGGTCCAAAATCCATTGCCATCAGTTTTTCGGCCTCAGTCTGCAATATTTATGAAAACCCTTATCAGCTAGCTAGATACCAATGAATGCCTTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATTCCGTCCTTCCTATCCACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCTTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTCTGATTCTTCTTCTTTCTTGGCCTTCCTGGACGTCGTTTCGCGGGAAGTGGAAGCGCTGAACTTTGGTTTTTGTGTTCTAGATCCTCTGATCCTTGACTTCCTGGAACCACCTGCGGCTCTGTCTGTGGCTCTGATCTGCCTTCTGAAGTCTCCGGAACAGCTTCTTCCGCTGAATCCAAATTTCGAATGTTGTCTTCTGACGCCTCCGATGGACCGGGAGCTTCGGAAGGTTCCACGATGATCGAAGGAAGCGCTTTTTCTGCTGGATCTGACTCATTTGGATCTTTTGGAGCTTCTGCCGGGAAGTTCTCGCTCCTCCATTCGTTCATTTTCCTTAG</canonical>
            <polymorphic>TTCCGGTTCATCCAGATTGACTAGCTGATCTGATAGTTCTGATCCTTCTGGAATATCCATCACTGGAAAATCGGAAGCCTCGGAAAGCACGACTGGCTCCAACTCCTTGGATTTCCTCGCTACTCGGTTGGATATCGACAGCTTTGGATGATCCACTGATTCTTCTAGCATTTTTCTTTGCTCCAATTGGACTTGATTGGTCCATAGCTTTTGTTTAGACGATCTAGCTTGAATATCTCGAAGACTTCCTCCAGCCTTTGGTCCAAAATCCATTGCCATCAGTTTTTCGGCCTCAGTCTGCAATATTTATGAAAACCCTTATCAGCTAGCTAGATACCAATGAATGCCTTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATTCCGTCCTTCCTATCCACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCTTCSACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTCTGATTCTTCTTCTTTCTTGGCCTTCCTGGACGTCGTTTCGCGGGAAGTGGAAGCGCTGAACTTTGGTTTTTGTGTTCTAGATCCTCTGATCCTTGACTTCCTGGAACCACCTGCGGCTCTGTCTGTGGCTCTGATCTGCCTTCTGAAGTCTCCGGAACAGCTTCTTCCGCTGAATCCAAATTTCGAATGTTGTCTTCTGACGCCTCCGATGGACCGGGAGCTTCGGAAGGTTCCACGATGATCGAAGGAAGCGCTTTTTCTGCTGGATCTGACTCATTTGGATCTTTTGGAGCTTCTGCCGGGAAGTTCTCGCTCCTCCATTCGTTCATTTTCCTTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>347 260 136 103 95 59</canonical_bands>
                <polymorphic_bands>607 136 103 95 59</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>342 170 158 142 99 67 22</canonical_bands>
                <polymorphic_bands>484 170 158 99 67 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTTCTCTCCTTTTTGACTGTT</pcr_primer_p1>
		<pcr_primer_p2>GAATTTGGAGGATAAAGAGTCTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCTTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTC</canonical_amplicon>
		<polymorphic_amplicon>ACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCTTCSACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15049</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>229145</contig_pos>
        <strand>+</strand>
        <context>CTATTTYATC[A/T]TCSACTCTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATC</left_flank>
        <right_flank>TCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATTCCGGTTCATCCAGATTGACTAGCTGATCTGATAGTTCTGATCCTTCTGGAATATCCATCACTGGAAAATCGGAAGCCTCGGAAAGCACGACTGGCTCCAACTCCTTGGATTTCCTCGCTACTCGGTTGGATATCGACAGCTTTGGATGATCCACTGATTCTTCTAGCATTTTTCTTTGCTCCAATTGGACTTGATTGGTCCATAGCTTTTGTTTAGACGATCTAGCTTGAATATCTCGAAGACTTCCTCCAGCCTTTGGTCCAAAATCCATTGCCATCAGTTTTTCGGCCTCAGTCTGCAATATTTATGAAAACCCTTATCAGCTAGCTAGATACCAATGAATGCCTTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATTCCGTCCTTCCTATCCACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCTTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTCTGATTCTTCTTCTTTCTTGGCCTTCCTGGACGTCGTTTCGCGGGAAGTGGAAGCGCTGAACTTTGGTTTTTGTGTTCTAGATCCTCTGATCCTTGACTTCCTGGAACCACCTGCGGCTCTGTCTGTGGCTCTGATCTGCCTTCTGAAGTCTCCGGAACAGCTTCTTCCGCTGAATCCAAATTTCGAATGTTGTCTTCTGACGCCTCCGATGGACCGGGAGCTTCGGAAGGTTCCACGATGATCGAAGGAAGCGCTTTTTCTGCTGGATCTGACTCATTTGGATCTTTTGGAGCTTCTGCCGGGAAGTTCTCGCTCCTCCATTCGTTCATTTTCCT</canonical>
            <polymorphic>GGATTCCGGTTCATCCAGATTGACTAGCTGATCTGATAGTTCTGATCCTTCTGGAATATCCATCACTGGAAAATCGGAAGCCTCGGAAAGCACGACTGGCTCCAACTCCTTGGATTTCCTCGCTACTCGGTTGGATATCGACAGCTTTGGATGATCCACTGATTCTTCTAGCATTTTTCTTTGCTCCAATTGGACTTGATTGGTCCATAGCTTTTGTTTAGACGATCTAGCTTGAATATCTCGAAGACTTCCTCCAGCCTTTGGTCCAAAATCCATTGCCATCAGTTTTTCGGCCTCAGTCTGCAATATTTATGAAAACCCTTATCAGCTAGCTAGATACCAATGAATGCCTTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATTCCGTCCTTCCTATCCACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCWTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTCTGATTCTTCTTCTTTCTTGGCCTTCCTGGACGTCGTTTCGCGGGAAGTGGAAGCGCTGAACTTTGGTTTTTGTGTTCTAGATCCTCTGATCCTTGACTTCCTGGAACCACCTGCGGCTCTGTCTGTGGCTCTGATCTGCCTTCTGAAGTCTCCGGAACAGCTTCTTCCGCTGAATCCAAATTTCGAATGTTGTCTTCTGACGCCTCCGATGGACCGGGAGCTTCGGAAGGTTCCACGATGATCGAAGGAAGCGCTTTTTCTGCTGGATCTGACTCATTTGGATCTTTTGGAGCTTCTGCCGGGAAGTTCTCGCTCCTCCATTCGTTCATTTTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTCTCTCCTTTTTGACTGTT</pcr_primer_p1>
		<pcr_primer_p2>GAATTTGGAGGATAAAGAGTCTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCTTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTC</canonical_amplicon>
		<polymorphic_amplicon>ACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCWTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15050</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>229141</contig_pos>
        <strand>+</strand>
        <context>TCTTCTATTT[C/T]ATCWTCSACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTT</left_flank>
        <right_flank>ATCTTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATGGATTCCGGTTCATCCAGATTGACTAGCTGATCTGATAGTTCTGATCCTTCTGGAATATCCATCACTGGAAAATCGGAAGCCTCGGAAAGCACGACTGGCTCCAACTCCTTGGATTTCCTCGCTACTCGGTTGGATATCGACAGCTTTGGATGATCCACTGATTCTTCTAGCATTTTTCTTTGCTCCAATTGGACTTGATTGGTCCATAGCTTTTGTTTAGACGATCTAGCTTGAATATCTCGAAGACTTCCTCCAGCCTTTGGTCCAAAATCCATTGCCATCAGTTTTTCGGCCTCAGTCTGCAATATTTATGAAAACCCTTATCAGCTAGCTAGATACCAATGAATGCCTTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATTCCGTCCTTCCTATCCACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCTTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTCTGATTCTTCTTCTTTCTTGGCCTTCCTGGACGTCGTTTCGCGGGAAGTGGAAGCGCTGAACTTTGGTTTTTGTGTTCTAGATCCTCTGATCCTTGACTTCCTGGAACCACCTGCGGCTCTGTCTGTGGCTCTGATCTGCCTTCTGAAGTCTCCGGAACAGCTTCTTCCGCTGAATCCAAATTTCGAATGTTGTCTTCTGACGCCTCCGATGGACCGGGAGCTTCGGAAGGTTCCACGATGATCGAAGGAAGCGCTTTTTCTGCTGGATCTGACTCATTTGGATCTTTTGGAGCTTCTGCCGGGAAGTTCTCGCTCCTCCATTCGTTCATTT</canonical>
            <polymorphic>CCATGGATTCCGGTTCATCCAGATTGACTAGCTGATCTGATAGTTCTGATCCTTCTGGAATATCCATCACTGGAAAATCGGAAGCCTCGGAAAGCACGACTGGCTCCAACTCCTTGGATTTCCTCGCTACTCGGTTGGATATCGACAGCTTTGGATGATCCACTGATTCTTCTAGCATTTTTCTTTGCTCCAATTGGACTTGATTGGTCCATAGCTTTTGTTTAGACGATCTAGCTTGAATATCTCGAAGACTTCCTCCAGCCTTTGGTCCAAAATCCATTGCCATCAGTTTTTCGGCCTCAGTCTGCAATATTTATGAAAACCCTTATCAGCTAGCTAGATACCAATGAATGCCTTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATTCCGTCCTTCCTATCCACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTYATCTTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTCTGATTCTTCTTCTTTCTTGGCCTTCCTGGACGTCGTTTCGCGGGAAGTGGAAGCGCTGAACTTTGGTTTTTGTGTTCTAGATCCTCTGATCCTTGACTTCCTGGAACCACCTGCGGCTCTGTCTGTGGCTCTGATCTGCCTTCTGAAGTCTCCGGAACAGCTTCTTCCGCTGAATCCAAATTTCGAATGTTGTCTTCTGACGCCTCCGATGGACCGGGAGCTTCGGAAGGTTCCACGATGATCGAAGGAAGCGCTTTTTCTGCTGGATCTGACTCATTTGGATCTTTTGGAGCTTCTGCCGGGAAGTTCTCGCTCCTCCATTCGTTCATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTCTCTCCTTTTTGACTGTT</pcr_primer_p1>
		<pcr_primer_p2>GAATTTGGAGGATAAAGAGTCTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCTTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTC</canonical_amplicon>
		<polymorphic_amplicon>ACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTYATCTTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15051</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>229130</contig_pos>
        <strand>+</strand>
        <context>TGCCAGCTTG[A/C]TCTTCTATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTG</left_flank>
        <right_flank>TCTTCTATTTTATCTTCGACTCTCTTTTCTTGGACTGGAACCTTATCATA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGATCTAGATCCATGGATTCCGGTTCATCCAGATTGACTAGCTGATCTGATAGTTCTGATCCTTCTGGAATATCCATCACTGGAAAATCGGAAGCCTCGGAAAGCACGACTGGCTCCAACTCCTTGGATTTCCTCGCTACTCGGTTGGATATCGACAGCTTTGGATGATCCACTGATTCTTCTAGCATTTTTCTTTGCTCCAATTGGACTTGATTGGTCCATAGCTTTTGTTTAGACGATCTAGCTTGAATATCTCGAAGACTTCCTCCAGCCTTTGGTCCAAAATCCATTGCCATCAGTTTTTCGGCCTCAGTCTGCAATATTTATGAAAACCCTTATCAGCTAGCTAGATACCAATGAATGCCTTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATTCCGTCCTTCCTATCCACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCTTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTCTGATTCTTCTTCTTTCTTGGCCTTCCTGGACGTCGTTTCGCGGGAAGTGGAAGCGCTGAACTTTGGTTTTTGTGTTCTAGATCCTCTGATCCTTGACTTCCTGGAACCACCTGCGGCTCTGTCTGTGGCTCTGATCTGCCTTCTGAAGTCTCCGGAACAGCTTCTTCCGCTGAATCCAAATTTCGAATGTTGTCTTCTGACGCCTCCGATGGACCGGGAGCTTCGGAAGGTTCCACGATGATCGAAGGAAGCGCTTTTTCTGCTGGATCTGACTCATTTGGATCTTTTGGAGCTTCTGCCGGGAAGTTCTCGCTCCTCCA</canonical>
            <polymorphic>CTGATCTAGATCCATGGATTCCGGTTCATCCAGATTGACTAGCTGATCTGATAGTTCTGATCCTTCTGGAATATCCATCACTGGAAAATCGGAAGCCTCGGAAAGCACGACTGGCTCCAACTCCTTGGATTTCCTCGCTACTCGGTTGGATATCGACAGCTTTGGATGATCCACTGATTCTTCTAGCATTTTTCTTTGCTCCAATTGGACTTGATTGGTCCATAGCTTTTGTTTAGACGATCTAGCTTGAATATCTCGAAGACTTCCTCCAGCCTTTGGTCCAAAATCCATTGCCATCAGTTTTTCGGCCTCAGTCTGCAATATTTATGAAAACCCTTATCAGCTAGCTAGATACCAATGAATGCCTTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATTCCGTCCTTCCTATCCACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGMTCTTCTATTTTATCTTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTCTGATTCTTCTTCTTTCTTGGCCTTCCTGGACGTCGTTTCGCGGGAAGTGGAAGCGCTGAACTTTGGTTTTTGTGTTCTAGATCCTCTGATCCTTGACTTCCTGGAACCACCTGCGGCTCTGTCTGTGGCTCTGATCTGCCTTCTGAAGTCTCCGGAACAGCTTCTTCCGCTGAATCCAAATTTCGAATGTTGTCTTCTGACGCCTCCGATGGACCGGGAGCTTCGGAAGGTTCCACGATGATCGAAGGAAGCGCTTTTTCTGCTGGATCTGACTCATTTGGATCTTTTGGAGCTTCTGCCGGGAAGTTCTCGCTCCTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>157 147 114 109 107 103 71 45 40 36 26 15 14 8 6 2</canonical_bands>
                <polymorphic_bands>250 157 114 109 107 71 45 40 36 26 15 14 8 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTTCTCTCCTTTTTGACTGTT</pcr_primer_p1>
		<pcr_primer_p2>GAATTTGGAGGATAAAGAGTCTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCTTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTC</canonical_amplicon>
		<polymorphic_amplicon>ACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGMTCTTCTATTTTATCTTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15052</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>228996</contig_pos>
        <strand>+</strand>
        <context>CAATGAATRC[C/T]TTACCTTCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGCAATATTTATGAAAACCCTTATCAGCTAGCTAGATACCAATGAATGC</left_flank>
        <right_flank>TTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGATCCTTCTAGTAGATTCTTCACTGAAAAATTGGAAGCTATGGAAGTCGTATTAGGACCCAGATTGACTAGTGGGTCCTCCACTGGAGAATCGGAAGCAATGGAAGCCTCGGAAGTCGAAACCGGAGCATACTGATCTAGATCCATGGATTCCGGTTCATCCAGATTGACTAGCTGATCTGATAGTTCTGATCCTTCTGGAATATCCATCACTGGAAAATCGGAAGCCTCGGAAAGCACGACTGGCTCCAACTCCTTGGATTTCCTCGCTACTCGGTTGGATATCGACAGCTTTGGATGATCCACTGATTCTTCTAGCATTTTTCTTTGCTCCAATTGGACTTGATTGGTCCATAGCTTTTGTTTAGACGATCTAGCTTGAATATCTCGAAGACTTCCTCCAGCCTTTGGTCCAAAATCCATTGCCATCAGTTTTTCGGCCTCAGTCTGCAATATTTATGAAAACCCTTATCAGCTAGCTAGATACCAATGAATGCCTTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATTCCGTCCTTCCTATCCACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCTTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTCTGATTCTTCTTCTTTCTTGGCCTTCCTGGACGTCGTTTCGCGGGAAGTGGAAGCGCTGAACTTTGGTTTTTGTGTTCTAGATCCTCTGATCCTTGACTTCCTGGAACCACCTGCGGCTCTGTCTGTGGCTCTGATCTGCCTTCTGAAGTCTCCGGAACAGCTTCTTCCGCTGAATCCAAATTTCGA</canonical>
            <polymorphic>TCTGATCCTTCTAGTAGATTCTTCACTGAAAAATTGGAAGCTATGGAAGTCGTATTAGGACCCAGATTGACTAGTGGGTCCTCCACTGGAGAATCGGAAGCAATGGAAGCCTCGGAAGTCGAAACCGGAGCATACTGATCTAGATCCATGGATTCCGGTTCATCCAGATTGACTAGCTGATCTGATAGTTCTGATCCTTCTGGAATATCCATCACTGGAAAATCGGAAGCCTCGGAAAGCACGACTGGCTCCAACTCCTTGGATTTCCTCGCTACTCGGTTGGATATCGACAGCTTTGGATGATCCACTGATTCTTCTAGCATTTTTCTTTGCTCCAATTGGACTTGATTGGTCCATAGCTTTTGTTTAGACGATCTAGCTTGAATATCTCGAAGACTTCCTCCAGCCTTTGGTCCAAAATCCATTGCCATCAGTTTTTCGGCCTCAGTCTGCAATATTTATGAAAACCCTTATCAGCTAGCTAGATACCAATGAATGCYTTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATTCCGTCCTTCCTATCCACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCTTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTCTGATTCTTCTTCTTTCTTGGCCTTCCTGGACGTCGTTTCGCGGGAAGTGGAAGCGCTGAACTTTGGTTTTTGTGTTCTAGATCCTCTGATCCTTGACTTCCTGGAACCACCTGCGGCTCTGTCTGTGGCTCTGATCTGCCTTCTGAAGTCTCCGGAACAGCTTCTTCCGCTGAATCCAAATTTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGGTCCATAGCTTTTGTTTA</pcr_primer_p1>
		<pcr_primer_p2>GAACAAGGAAACAGTCAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTGGTCCATAGCTTTTGTTTAGACGATCTAGCTTGAATATCTCGAAGACTTCCTCCAGCCTTTGGTCCAAAATCCATTGCCATCAGTTTTTCGGCCTCAGTCTGCAATATTTATGAAAACCCTTATCAGCTAGCTAGATACCAATGAATGCCTTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATTCCGTCCTTCCTATCCACTTTCTCTCCTTTTTGACTGTTTCCTTGTTC</canonical_amplicon>
		<polymorphic_amplicon>ATTGGTCCATAGCTTTTGTTTAGACGATCTAGCTTGAATATCTCGAAGACTTCCTCCAGCCTTTGGTCCAAAATCCATTGCCATCAGTTTTTCGGCCTCAGTCTGCAATATTTATGAAAACCCTTATCAGCTAGCTAGATACCAATGAATGCYTTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATTCCGTCCTTCCTATCCACTTTCTCTCCTTTTTGACTGTTTCCTTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15053</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>228982</contig_pos>
        <strand>+</strand>
        <context>AGCTAGCTAG[A/C]TACCAATGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTCGGCCTCAGTCTGCAATATTTATGAAAACCCTTATCAGCTAGCTAG</left_flank>
        <right_flank>TACCAATGAATGCCTTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGATCCAAACCTTCTGATCCTTCTAGTAGATTCTTCACTGAAAAATTGGAAGCTATGGAAGTCGTATTAGGACCCAGATTGACTAGTGGGTCCTCCACTGGAGAATCGGAAGCAATGGAAGCCTCGGAAGTCGAAACCGGAGCATACTGATCTAGATCCATGGATTCCGGTTCATCCAGATTGACTAGCTGATCTGATAGTTCTGATCCTTCTGGAATATCCATCACTGGAAAATCGGAAGCCTCGGAAAGCACGACTGGCTCCAACTCCTTGGATTTCCTCGCTACTCGGTTGGATATCGACAGCTTTGGATGATCCACTGATTCTTCTAGCATTTTTCTTTGCTCCAATTGGACTTGATTGGTCCATAGCTTTTGTTTAGACGATCTAGCTTGAATATCTCGAAGACTTCCTCCAGCCTTTGGTCCAAAATCCATTGCCATCAGTTTTTCGGCCTCAGTCTGCAATATTTATGAAAACCCTTATCAGCTAGCTAGATACCAATGAATGCCTTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATTCCGTCCTTCCTATCCACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCTTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTCTGATTCTTCTTCTTTCTTGGCCTTCCTGGACGTCGTTTCGCGGGAAGTGGAAGCGCTGAACTTTGGTTTTTGTGTTCTAGATCCTCTGATCCTTGACTTCCTGGAACCACCTGCGGCTCTGTCTGTGGCTCTGATCTGCCTTCTGAAGTCTCCGGAACAGCTTCTTCCGCTG</canonical>
            <polymorphic>GTGGATCCAAACCTTCTGATCCTTCTAGTAGATTCTTCACTGAAAAATTGGAAGCTATGGAAGTCGTATTAGGACCCAGATTGACTAGTGGGTCCTCCACTGGAGAATCGGAAGCAATGGAAGCCTCGGAAGTCGAAACCGGAGCATACTGATCTAGATCCATGGATTCCGGTTCATCCAGATTGACTAGCTGATCTGATAGTTCTGATCCTTCTGGAATATCCATCACTGGAAAATCGGAAGCCTCGGAAAGCACGACTGGCTCCAACTCCTTGGATTTCCTCGCTACTCGGTTGGATATCGACAGCTTTGGATGATCCACTGATTCTTCTAGCATTTTTCTTTGCTCCAATTGGACTTGATTGGTCCATAGCTTTTGTTTAGACGATCTAGCTTGAATATCTCGAAGACTTCCTCCAGCCTTTGGTCCAAAATCCATTGCCATCAGTTTTTCGGCCTCAGTCTGCAATATTTATGAAAACCCTTATCAGCTAGCTAGMTACCAATGAATGCCTTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATTCCGTCCTTCCTATCCACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCTTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTCTGATTCTTCTTCTTTCTTGGCCTTCCTGGACGTCGTTTCGCGGGAAGTGGAAGCGCTGAACTTTGGTTTTTGTGTTCTAGATCCTCTGATCCTTGACTTCCTGGAACCACCTGCGGCTCTGTCTGTGGCTCTGATCTGCCTTCTGAAGTCTCCGGAACAGCTTCTTCCGCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGGTCCATAGCTTTTGTTTA</pcr_primer_p1>
		<pcr_primer_p2>GAACAAGGAAACAGTCAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTGGTCCATAGCTTTTGTTTAGACGATCTAGCTTGAATATCTCGAAGACTTCCTCCAGCCTTTGGTCCAAAATCCATTGCCATCAGTTTTTCGGCCTCAGTCTGCAATATTTATGAAAACCCTTATCAGCTAGCTAGATACCAATGAATGCCTTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATTCCGTCCTTCCTATCCACTTTCTCTCCTTTTTGACTGTTTCCTTGTTC</canonical_amplicon>
		<polymorphic_amplicon>ATTGGTCCATAGCTTTTGTTTAGACGATCTAGCTTGAATATCTCGAAGACTTCCTCCAGCCTTTGGTCCAAAATCCATTGCCATCAGTTTTTCGGCCTCAGTCTGCAATATTTATGAAAACCCTTATCAGCTAGCTAGMTACCAATGAATGCCTTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATTCCGTCCTTCCTATCCACTTTCTCTCCTTTTTGACTGTTTCCTTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15054</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>358302</contig_pos>
        <strand>+</strand>
        <context>GGAATGGGGT[A/T]ACCAAAATAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGGGACCTTTGAGTTCCCATAATGGGTACAGTGGTAGGTAGGAATGGGGT</left_flank>
        <right_flank>ACCAAAATAGGGACCGGGTCCCCATAATAGAGATTGCAGAATCCGTATGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATAAAGATAAGCTGGCAGAGCAAAGGAAGGAGACACTGGAACTGGCGGATATGTTGGGAGAGGGACAGGCCAAATTGGACGATTTGGAGGCGTTGGCAGCGAAGATGGAGGATGGGAAGGGTACATCCAGACAGATTTCTGAACTCGGAGCACGACTTCAACGACAGACCTCGGAGCTCAAGGCACGAGGAGATCGGATCAATAAGCTCGATGGGAAGGCAACTGCTTTTGCCGACTCGGAACGAGCTGTGTTGGAGTATATGGAGAAGAAGAGGGAGCAGTTGGAGACGTTCCCGGTGCCAACGACCAAGGAGGGAGTGAAAGCGCAGTTGCAGGTACGCTATGGGGTCCAAGTAAAGGGGTGGGGTGCCCATAATGGAGGCTTTGGGTTCCCGATGATGGGGTCTTTGGGGTCCCGATGATGGGGACCTTTGGGGTCCCGATGATGGGGACCTTTGAGTTCCCATAATGGGTACAGTGGTAGGTAGGAATGGGGTTACCAAAATAGGGACCGGGTCCCCATAATAGAGATTGCAGAATCCGTATGATGGCGACAGTTGCAGTTAGGCATGGGTACCCCATAATGGGGTATTCGGGTTCCCGATAATGGGGGCATGGGGTCAGTTGGTAGTAGGGATAGGGCCCCCATAATAGAGATAGCAGGGGTACCCATAATGGGGACAATTGCAAGTTGGTATGGGGTGCCGATAATGGGGAGTTTGGGGCCCCGATAATAGGGATATAGGAGTTCCCATAATGGGGGATTTCAGGGACCCCATAATGGAGATTGCGGGGTTCCCATAATGGAAACAGTTGCAAGTAGATATGGGGCCCGATAATGGGGACATTGGGGTTCCCATAGTGGTGACAGTTGCAGCTAGGTATGGGGTCGCCATAATGGGGGCACTTGTAGTTAGGTACCCATAATGGGGGCCATATTATCCATAATTGGGATTGCATGGGGTATTTGGGATTCCGATAATGGGGACTTTGGGCTC</canonical>
            <polymorphic>CGATAAAGATAAGCTGGCAGAGCAAAGGAAGGAGACACTGGAACTGGCGGATATGTTGGGAGAGGGACAGGCCAAATTGGACGATTTGGAGGCGTTGGCAGCGAAGATGGAGGATGGGAAGGGTACATCCAGACAGATTTCTGAACTCGGAGCACGACTTCAACGACAGACCTCGGAGCTCAAGGCACGAGGAGATCGGATCAATAAGCTCGATGGGAAGGCAACTGCTTTTGCCGACTCGGAACGAGCTGTGTTGGAGTATATGGAGAAGAAGAGGGAGCAGTTGGAGACGTTCCCGGTGCCAACGACCAAGGAGGGAGTGAAAGCGCAGTTGCAGGTACGCTATGGGGTCCAAGTAAAGGGGTGGGGTGCCCATAATGGAGGCTTTGGGTTCCCGATGATGGGGTCTTTGGGGTCCCGATGATGGGGACCTTTGGGGTCCCGATGATGGGGACCTTTGAGTTCCCATAATGGGTACAGTGGTAGGTAGGAATGGGGTWACCAAAATAGGGACCGGGTCCCCATAATAGAGATTGCAGAATCCGTATGATGGCGACAGTTGCAGTTAGGCATGGGTACCCCATAATGGGGTATTCGGGTTCCCGATAATGGGGGCATGGGGTCAGTTGGTAGTAGGGATAGGGCCCCCATAATAGAGATAGCAGGGGTACCCATAATGGGGACAATTGCAAGTTGGTATGGGGTGCCGATAATGGGGAGTTTGGGGCCCCGATAATAGGGATATAGGAGTTCCCATAATGGGGGATTTCAGGGACCCCATAATGGAGATTGCGGGGTTCCCATAATGGAAACAGTTGCAAGTAGATATGGGGCCCGATAATGGGGACATTGGGGTTCCCATAGTGGTGACAGTTGCAGCTAGGTATGGGGTCGCCATAATGGGGGCACTTGTAGTTAGGTACCCATAATGGGGGCCATATTATCCATAATTGGGATTGCATGGGGTATTTGGGATTCCGATAATGGGGACTTTGGGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTATGGGGTCCAAGTAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTATCCCTACTACCAACTGACC</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>GCTATGGGGTCCAAGTAAAGGGGTGGGGTGCCCATAATGGAGGCTTTGGGTTCCCGATGATGGGGTCTTTGGGGTCCCGATGATGGGGACCTTTGGGGTCCCGATGATGGGGACCTTTGAGTTCCCATAATGGGTACAGTGGTAGGTAGGAATGGGGTTACCAAAATAGGGACCGGGTCCCCATAATAGAGATTGCAGAATCCGTATGATGGCGACAGTTGCAGTTAGGCATGGGTACCCCATAATGGGGTATTCGGGTTCCCGATAATGGGGGCATGGGGTCAGTTGGTAGTAGGGATAG</canonical_amplicon>
		<polymorphic_amplicon>GCTATGGGGTCCAAGTAAAGGGGTGGGGTGCCCATAATGGAGGCTTTGGGTTCCCGATGATGGGGTCTTTGGGGTCCCGATGATGGGGACCTTTGGGGTCCCGATGATGGGGACCTTTGAGTTCCCATAATGGGTACAGTGGTAGGTAGGAATGGGGTWACCAAAATAGGGACCGGGTCCCCATAATAGAGATTGCAGAATCCGTATGATGGCGACAGTTGCAGTTAGGCATGGGTACCCCATAATGGGGTATTCGGGTTCCCGATAATGGGGGCATGGGGTCAGTTGGTAGTAGGGATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15055</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>358404</contig_pos>
        <strand>+</strand>
        <context>TATTCGGGTT[C/T]CCGATAATGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCGACAGTTGCAGTTAGGCATGGGTACCCCATAATGGGGTATTCGGGTT</left_flank>
        <right_flank>CCGATAATGGGGGCATGGGGTCAGTTGGTAGTAGGGATAGGGCCCCCATA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGATGGAGGATGGGAAGGGTACATCCAGACAGATTTCTGAACTCGGAGCACGACTTCAACGACAGACCTCGGAGCTCAAGGCACGAGGAGATCGGATCAATAAGCTCGATGGGAAGGCAACTGCTTTTGCCGACTCGGAACGAGCTGTGTTGGAGTATATGGAGAAGAAGAGGGAGCAGTTGGAGACGTTCCCGGTGCCAACGACCAAGGAGGGAGTGAAAGCGCAGTTGCAGGTACGCTATGGGGTCCAAGTAAAGGGGTGGGGTGCCCATAATGGAGGCTTTGGGTTCCCGATGATGGGGTCTTTGGGGTCCCGATGATGGGGACCTTTGGGGTCCCGATGATGGGGACCTTTGAGTTCCCATAATGGGTACAGTGGTAGGTAGGAATGGGGTTACCAAAATAGGGACCGGGTCCCCATAATAGAGATTGCAGAATCCGTATGATGGCGACAGTTGCAGTTAGGCATGGGTACCCCATAATGGGGTATTCGGGTTCCCGATAATGGGGGCATGGGGTCAGTTGGTAGTAGGGATAGGGCCCCCATAATAGAGATAGCAGGGGTACCCATAATGGGGACAATTGCAAGTTGGTATGGGGTGCCGATAATGGGGAGTTTGGGGCCCCGATAATAGGGATATAGGAGTTCCCATAATGGGGGATTTCAGGGACCCCATAATGGAGATTGCGGGGTTCCCATAATGGAAACAGTTGCAAGTAGATATGGGGCCCGATAATGGGGACATTGGGGTTCCCATAGTGGTGACAGTTGCAGCTAGGTATGGGGTCGCCATAATGGGGGCACTTGTAGTTAGGTACCCATAATGGGGGCCATATTATCCATAATTGGGATTGCATGGGGTATTTGGGATTCCGATAATGGGGACTTTGGGCTCCTGATAATAAGGATTTTGGGCTCCCAATAACGGGAATTTCGAGATACCCATTATGGGGATGATGGGGTCCCGATAACGAAGAATATAAGGTTCCCATAATAA</canonical>
            <polymorphic>GAAGATGGAGGATGGGAAGGGTACATCCAGACAGATTTCTGAACTCGGAGCACGACTTCAACGACAGACCTCGGAGCTCAAGGCACGAGGAGATCGGATCAATAAGCTCGATGGGAAGGCAACTGCTTTTGCCGACTCGGAACGAGCTGTGTTGGAGTATATGGAGAAGAAGAGGGAGCAGTTGGAGACGTTCCCGGTGCCAACGACCAAGGAGGGAGTGAAAGCGCAGTTGCAGGTACGCTATGGGGTCCAAGTAAAGGGGTGGGGTGCCCATAATGGAGGCTTTGGGTTCCCGATGATGGGGTCTTTGGGGTCCCGATGATGGGGACCTTTGGGGTCCCGATGATGGGGACCTTTGAGTTCCCATAATGGGTACAGTGGTAGGTAGGAATGGGGTTACCAAAATAGGGACCGGGTCCCCATAATAGAGATTGCAGAATCCGTATGATGGCGACAGTTGCAGTTAGGCATGGGTACCCCATAATGGGGTATTCGGGTTYCCGATAATGGGGGCATGGGGTCAGTTGGTAGTAGGGATAGGGCCCCCATAATAGAGATAGCAGGGGTACCCATAATGGGGACAATTGCAAGTTGGTATGGGGTGCCGATAATGGGGAGTTTGGGGCCCCGATAATAGGGATATAGGAGTTCCCATAATGGGGGATTTCAGGGACCCCATAATGGAGATTGCGGGGTTCCCATAATGGAAACAGTTGCAAGTAGATATGGGGCCCGATAATGGGGACATTGGGGTTCCCATAGTGGTGACAGTTGCAGCTAGGTATGGGGTCGCCATAATGGGGGCACTTGTAGTTAGGTACCCATAATGGGGGCCATATTATCCATAATTGGGATTGCATGGGGTATTTGGGATTCCGATAATGGGGACTTTGGGCTCCTGATAATAAGGATTTTGGGCTCCCAATAACGGGAATTTCGAGATACCCATTATGGGGATGATGGGGTCCCGATAACGAAGAATATAAGGTTCCCATAATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>256 69 61 58 49 45 42 41 37 36 36 33 28 24 24 24 23 23 23 23 23 22</canonical_bands>
                <polymorphic_bands>256 68 61 58 49 45 42 41 37 36 36 33 28 24 24 24 24 23 23 23 23 22</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>198 65 64 59 59 50 48 46 44 36 34 25 24 24 24 23 23 23 22 21 20 14 14 13 11 10 6</canonical_bands>
                <polymorphic_bands>198 67 65 64 59 59 50 48 46 36 34 25 24 24 24 23 23 22 21 20 14 14 13 11 10 6</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>398 265 161 40 33 29 27 24 23</canonical_bands>
                <polymorphic_bands>559 265 40 33 29 27 24 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCATAATAGAGATTGCAGAA</pcr_primer_p1>
		<pcr_primer_p2>CATTATGGGAACTCCTATATCC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CCCATAATAGAGATTGCAGAATCCGTATGATGGCGACAGTTGCAGTTAGGCATGGGTACCCCATAATGGGGTATTCGGGTTCCCGATAATGGGGGCATGGGGTCAGTTGGTAGTAGGGATAGGGCCCCCATAATAGAGATAGCAGGGGTACCCATAATGGGGACAATTGCAAGTTGGTATGGGGTGCCGATAATGGGGAGTTTGGGGCCCCGATAATAGGGATATAGGAGTTCCCATAATG</canonical_amplicon>
		<polymorphic_amplicon>CCCATAATAGAGATTGCAGAATCCGTATGATGGCGACAGTTGCAGTTAGGCATGGGTACCCCATAATGGGGTATTCGGGTTYCCGATAATGGGGGCATGGGGTCAGTTGGTAGTAGGGATAGGGCCCCCATAATAGAGATAGCAGGGGTACCCATAATGGGGACAATTGCAAGTTGGTATGGGGTGCCGATAATGGGGAGTTTGGGGCCCCGATAATAGGGATATAGGAGTTCCCATAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15056</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>358448</contig_pos>
        <strand>+</strand>
        <context>GGGATAGGGC[C/T]CCCATAATAS</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGGTTCCCGATAATGGGGGCATGGGGTCAGTTGGTAGTAGGGATAGGGC</left_flank>
        <right_flank>CCCATAATAGAGATAGCAGGGGTACCCATAATGGGGACAATTGCAAGTTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGGAGCACGACTTCAACGACAGACCTCGGAGCTCAAGGCACGAGGAGATCGGATCAATAAGCTCGATGGGAAGGCAACTGCTTTTGCCGACTCGGAACGAGCTGTGTTGGAGTATATGGAGAAGAAGAGGGAGCAGTTGGAGACGTTCCCGGTGCCAACGACCAAGGAGGGAGTGAAAGCGCAGTTGCAGGTACGCTATGGGGTCCAAGTAAAGGGGTGGGGTGCCCATAATGGAGGCTTTGGGTTCCCGATGATGGGGTCTTTGGGGTCCCGATGATGGGGACCTTTGGGGTCCCGATGATGGGGACCTTTGAGTTCCCATAATGGGTACAGTGGTAGGTAGGAATGGGGTTACCAAAATAGGGACCGGGTCCCCATAATAGAGATTGCAGAATCCGTATGATGGCGACAGTTGCAGTTAGGCATGGGTACCCCATAATGGGGTATTCGGGTTCCCGATAATGGGGGCATGGGGTCAGTTGGTAGTAGGGATAGGGCCCCCATAATAGAGATAGCAGGGGTACCCATAATGGGGACAATTGCAAGTTGGTATGGGGTGCCGATAATGGGGAGTTTGGGGCCCCGATAATAGGGATATAGGAGTTCCCATAATGGGGGATTTCAGGGACCCCATAATGGAGATTGCGGGGTTCCCATAATGGAAACAGTTGCAAGTAGATATGGGGCCCGATAATGGGGACATTGGGGTTCCCATAGTGGTGACAGTTGCAGCTAGGTATGGGGTCGCCATAATGGGGGCACTTGTAGTTAGGTACCCATAATGGGGGCCATATTATCCATAATTGGGATTGCATGGGGTATTTGGGATTCCGATAATGGGGACTTTGGGCTCCTGATAATAAGGATTTTGGGCTCCCAATAACGGGAATTTCGAGATACCCATTATGGGGATGATGGGGTCCCGATAACGAAGAATATAAGGTTCCCATAATAAGGGATGGGTCCCCCATAATGGTGATGGCAATGTACCCATAATTG</canonical>
            <polymorphic>TCGGAGCACGACTTCAACGACAGACCTCGGAGCTCAAGGCACGAGGAGATCGGATCAATAAGCTCGATGGGAAGGCAACTGCTTTTGCCGACTCGGAACGAGCTGTGTTGGAGTATATGGAGAAGAAGAGGGAGCAGTTGGAGACGTTCCCGGTGCCAACGACCAAGGAGGGAGTGAAAGCGCAGTTGCAGGTACGCTATGGGGTCCAAGTAAAGGGGTGGGGTGCCCATAATGGAGGCTTTGGGTTCCCGATGATGGGGTCTTTGGGGTCCCGATGATGGGGACCTTTGGGGTCCCGATGATGGGGACCTTTGAGTTCCCATAATGGGTACAGTGGTAGGTAGGAATGGGGTTACCAAAATAGGGACCGGGTCCCCATAATAGAGATTGCAGAATCCGTATGATGGCGACAGTTGCAGTTAGGCATGGGTACCCCATAATGGGGTATTCGGGTTCCCGATAATGGGGGCATGGGGTCAGTTGGTAGTAGGGATAGGGCYCCCATAATAGAGATAGCAGGGGTACCCATAATGGGGACAATTGCAAGTTGGTATGGGGTGCCGATAATGGGGAGTTTGGGGCCCCGATAATAGGGATATAGGAGTTCCCATAATGGGGGATTTCAGGGACCCCATAATGGAGATTGCGGGGTTCCCATAATGGAAACAGTTGCAAGTAGATATGGGGCCCGATAATGGGGACATTGGGGTTCCCATAGTGGTGACAGTTGCAGCTAGGTATGGGGTCGCCATAATGGGGGCACTTGTAGTTAGGTACCCATAATGGGGGCCATATTATCCATAATTGGGATTGCATGGGGTATTTGGGATTCCGATAATGGGGACTTTGGGCTCCTGATAATAAGGATTTTGGGCTCCCAATAACGGGAATTTCGAGATACCCATTATGGGGATGATGGGGTCCCGATAACGAAGAATATAAGGTTCCCATAATAAGGGATGGGTCCCCCATAATGGTGATGGCAATGTACCCATAATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGGCCC</site>
                <isoschizomers>
                    <enzyme>ApaI</enzyme>
                    <enzyme>Bsp120I</enzyme>
                    <enzyme>PspOMI</enzyme>
                </isoschizomers>
                <canonical_bands>500 311 106 83</canonical_bands>
                <polymorphic_bands>583 311 106</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>466 164 124 106 83 34 23</canonical_bands>
                <polymorphic_bands>549 164 124 106 34 23</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>273 238 227 106 83 73</canonical_bands>
                <polymorphic_bands>356 238 227 106 73</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>273 193 124 106 91 83 73 26 23 8</canonical_bands>
                <polymorphic_bands>356 193 124 106 91 73 26 23 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>154 65 64 59 59 50 48 46 44 36 36 34 25 24 24 24 23 23 23 22 21 20 19 14 14 13 10 6</canonical_bands>
                <polymorphic_bands>154 65 64 59 59 50 48 46 45 36 36 34 24 24 24 24 23 23 23 22 21 20 19 14 14 13 10 6</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>498 211 106 102 83</canonical_bands>
                <polymorphic_bands>581 211 106 102</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>260 136 126 106 83 62 56 46 40 32 30 23</canonical_bands>
                <polymorphic_bands>343 136 126 106 62 56 46 40 32 30 23</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>268 235 125 83 65 58 48 43 37 14 14 10</canonical_bands>
                <polymorphic_bands>268 235 208 65 58 48 43 37 14 14 10</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>206 133 125 102 83 65 59 58 48 43 34 14 14 10 6</canonical_bands>
                <polymorphic_bands>208 206 133 102 65 59 58 48 43 34 14 14 10 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCATAATAGAGATTGCAGAA</pcr_primer_p1>
		<pcr_primer_p2>CATTATGGGAACTCCTATATCC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CCCATAATAGAGATTGCAGAATCCGTATGATGGCGACAGTTGCAGTTAGGCATGGGTACCCCATAATGGGGTATTCGGGTTCCCGATAATGGGGGCATGGGGTCAGTTGGTAGTAGGGATAGGGCCCCCATAATAGAGATAGCAGGGGTACCCATAATGGGGACAATTGCAAGTTGGTATGGGGTGCCGATAATGGGGAGTTTGGGGCCCCGATAATAGGGATATAGGAGTTCCCATAATG</canonical_amplicon>
		<polymorphic_amplicon>CCCATAATAGAGATTGCAGAATCCGTATGATGGCGACAGTTGCAGTTAGGCATGGGTACCCCATAATGGGGTATTCGGGTTCCCGATAATGGGGGCATGGGGTCAGTTGGTAGTAGGGATAGGGCYCCCATAATAGAGATAGCAGGGGTACCCATAATGGGGACAATTGCAAGTTGGTATGGGGTGCCGATAATGGGGAGTTTGGGGCCCCGATAATAGGGATATAGGAGTTCCCATAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15057</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>360999</contig_pos>
        <strand>+</strand>
        <context>TCCAGAAGCT[C/G]TTGGAGAACG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAGAAGCTACACGAGGAGCTCAAGAGAGCTGACGACGTGTTCCAGAAGCT</left_flank>
        <right_flank>TTGGAGAACGAAGGAGAGGTGTCACTGATAAGAGCGAAGGTTGCAGAGGA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGATTCTGGTAGGATTACTGTAGCCTAATTGCGCACCCAAAAGAAATGTTTTTTTTTTCAGAAAAGAGCTCTCCGAACTGGAATCGAACGTCGAGAAGGCATCCCGAATGTCCCCCAACGACATTGGAGACCAACTGGCCACTCTCGACTCCCTGAAATCCCGTTTTGGAGGTGTTGATGCGGCACTGGAGAAGCTGAAGACGATTCTAGAAGCCACCGATGATCTAGAAGTGGACTCAACGAATCGAGCAGAGATTCAGGAGCAGCTGGAGAGCACGCAGAAGAAGGCTGATGAGCTGGAGAGGAAGATTGAGTCAGTGAAGAGAGCAGCACTGAACGCTCAGAATGAAGGCGTCGAGTTGGAGAAGAGACTGGACGATTTGATTGGAATTGTGGCACAGGCGGAGAATGAGCTGGAGCAGGCTGCTCCAATTGCAGCCGACTCGCAGAAGCTACACGAGGAGCTCAAGAGAGCTGACGACGTGTTCCAGAAGCTCTTGGAGAACGAAGGAGAGGTGTCACTGATAAGAGCGAAGGTTGCAGAGGAGTTGAAGAAGAAGCCGGATGTGGAGCTGAAGAAGAAGGTGGAGATGTTGAATTCAAAATGGCCCAAGGCTCTGGGAGCAGCTAGAGATCGAAAGGATTTGGTGACGAAGGCTGGAGACTTGGTGAAGCTCTTCGGAGAGTCAGAAGGAGCTCTCGAGCAGAGACTCCAAGGAGATCAGAGTGGTTTGGAGGAGCTATTGGATAGAATTCAGGATCCTGAAGCGCTGGACGCTCTGAAGCTGGTGGAGAAGACGATGGATAGAAGACTCGCCGACGTGGATTCGTTGAATTCCGTGATGGATCGAATCGAGGCTTCTGCACCGGGTCCGGACGCGAATCGCCTGCGAAGACGTGCCGAGAAGTTGGCTGACGACGTGAAGGGAATGGCGAAGAAGGCGAGGACGGCGGCGGCGTTGGCACAGAGGAAACACGATTTCTCGATGAAGTTTGA</canonical>
            <polymorphic>TTTTGATTCTGGTAGGATTACTGTAGCCTAATTGCGCACCCAAAAGAAATGTTTTTTTTTTCAGAAAAGAGCTCTCCGAACTGGAATCGAACGTCGAGAAGGCATCCCGAATGTCCCCCAACGACATTGGAGACCAACTGGCCACTCTCGACTCCCTGAAATCCCGTTTTGGAGGTGTTGATGCGGCACTGGAGAAGCTGAAGACGATTCTAGAAGCCACCGATGATCTAGAAGTGGACTCAACGAATCGAGCAGAGATTCAGGAGCAGCTGGAGAGCACGCAGAAGAAGGCTGATGAGCTGGAGAGGAAGATTGAGTCAGTGAAGAGAGCAGCACTGAACGCTCAGAATGAAGGCGTCGAGTTGGAGAAGAGACTGGACGATTTGATTGGAATTGTGGCACAGGCGGAGAATGAGCTGGAGCAGGCTGCTCCAATTGCAGCCGACTCGCAGAAGCTACACGAGGAGCTCAAGAGAGCTGACGACGTGTTCCAGAAGCTSTTGGAGAACGAAGGAGAGGTGTCACTGATAAGAGCGAAGGTTGCAGAGGAGTTGAAGAAGAAGCCGGATGTGGAGCTGAAGAAGAAGGTGGAGATGTTGAATTCAAAATGGCCCAAGGCTCTGGGAGCAGCTAGAGATCGAAAGGATTTGGTGACGAAGGCTGGAGACTTGGTGAAGCTCTTCGGAGAGTCAGAAGGAGCTCTCGAGCAGAGACTCCAAGGAGATCAGAGTGGTTTGGAGGAGCTATTGGATAGAATTCAGGATCCTGAAGCGCTGGACGCTCTGAAGCTGGTGGAGAAGACGATGGATAGAAGACTCGCCGACGTGGATTCGTTGAATTCCGTGATGGATCGAATCGAGGCTTCTGCACCGGGTCCGGACGCGAATCGCCTGCGAAGACGTGCCGAGAAGTTGGCTGACGACGTGAAGGGAATGGCGAAGAAGGCGAGGACGGCGGCGGCGTTGGCACAGAGGAAACACGATTTCTCGATGAAGTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAGATTGAGTCAGTGAAGAG</pcr_primer_p1>
		<pcr_primer_p2>GCTTCTTCTTCAACTCCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>GGAAGATTGAGTCAGTGAAGAGAGCAGCACTGAACGCTCAGAATGAAGGCGTCGAGTTGGAGAAGAGACTGGACGATTTGATTGGAATTGTGGCACAGGCGGAGAATGAGCTGGAGCAGGCTGCTCCAATTGCAGCCGACTCGCAGAAGCTACACGAGGAGCTCAAGAGAGCTGACGACGTGTTCCAGAAGCTCTTGGAGAACGAAGGAGAGGTGTCACTGATAAGAGCGAAGGTTGCAGAGGAGTTGAAGAAGAAGC</canonical_amplicon>
		<polymorphic_amplicon>GGAAGATTGAGTCAGTGAAGAGAGCAGCACTGAACGCTCAGAATGAAGGCGTCGAGTTGGAGAAGAGACTGGACGATTTGATTGGAATTGTGGCACAGGCGGAGAATGAGCTGGAGCAGGCTGCTCCAATTGCAGCCGACTCGCAGAAGCTACACGAGGAGCTCAAGAGAGCTGACGACGTGTTCCAGAAGCTSTTGGAGAACGAAGGAGAGGTGTCACTGATAAGAGCGAAGGTTGCAGAGGAGTTGAAGAAGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15058</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>360791</contig_pos>
        <strand>+</strand>
        <context>CAGAAGAAGG[C/T]TGATGAGCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACGAATCGAGCAGAGATTCAGGAGCAGCTGGAGAGCACGCAGAAGAAGG</left_flank>
        <right_flank>TGATGAGCTGGAGAGGAAGATTGAGTCAGTGAAGAGAGCAGCACTGAACG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAGGATTCTCTGGGATTACTGTAGTGTTGATTTGGGGTTCAAACCACTTGGATTACTGTAGTTTGATTGCTCAGTTAGGATTTTCTGGGATTACTCGCGTCAAAACGACTCTCAAACTAGTTACGATTATTTGGGAGTACTGTAGTTTTATGACCACTGCTCATTCCCAGATTTGTAGTACAGTGTCCGAGGATTAGGTTACTGTAGTTTTGATTCTGGTAGGATTACTGTAGCCTAATTGCGCACCCAAAAGAAATGTTTTTTTTTTCAGAAAAGAGCTCTCCGAACTGGAATCGAACGTCGAGAAGGCATCCCGAATGTCCCCCAACGACATTGGAGACCAACTGGCCACTCTCGACTCCCTGAAATCCCGTTTTGGAGGTGTTGATGCGGCACTGGAGAAGCTGAAGACGATTCTAGAAGCCACCGATGATCTAGAAGTGGACTCAACGAATCGAGCAGAGATTCAGGAGCAGCTGGAGAGCACGCAGAAGAAGGCTGATGAGCTGGAGAGGAAGATTGAGTCAGTGAAGAGAGCAGCACTGAACGCTCAGAATGAAGGCGTCGAGTTGGAGAAGAGACTGGACGATTTGATTGGAATTGTGGCACAGGCGGAGAATGAGCTGGAGCAGGCTGCTCCAATTGCAGCCGACTCGCAGAAGCTACACGAGGAGCTCAAGAGAGCTGACGACGTGTTCCAGAAGCTCTTGGAGAACGAAGGAGAGGTGTCACTGATAAGAGCGAAGGTTGCAGAGGAGTTGAAGAAGAAGCCGGATGTGGAGCTGAAGAAGAAGGTGGAGATGTTGAATTCAAAATGGCCCAAGGCTCTGGGAGCAGCTAGAGATCGAAAGGATTTGGTGACGAAGGCTGGAGACTTGGTGAAGCTCTTCGGAGAGTCAGAAGGAGCTCTCGAGCAGAGACTCCAAGGAGATCAGAGTGGTTTGGAGGAGCTATTGGATAGAATTCAGGATCCTGAAGCGCTGGACGCTCTGAAGCTGG</canonical>
            <polymorphic>CTAGGATTCTCTGGGATTACTGTAGTGTTGATTTGGGGTTCAAACCACTTGGATTACTGTAGTTTGATTGCTCAGTTAGGATTTTCTGGGATTACTCGCGTCAAAACGACTCTCAAACTAGTTACGATTATTTGGGAGTACTGTAGTTTTATGACCACTGCTCATTCCCAGATTTGTAGTACAGTGTCCGAGGATTAGGTTACTGTAGTTTTGATTCTGGTAGGATTACTGTAGCCTAATTGCGCACCCAAAAGAAATGTTTTTTTTTTCAGAAAAGAGCTCTCCGAACTGGAATCGAACGTCGAGAAGGCATCCCGAATGTCCCCCAACGACATTGGAGACCAACTGGCCACTCTCGACTCCCTGAAATCCCGTTTTGGAGGTGTTGATGCGGCACTGGAGAAGCTGAAGACGATTCTAGAAGCCACCGATGATCTAGAAGTGGACTCAACGAATCGAGCAGAGATTCAGGAGCAGCTGGAGAGCACGCAGAAGAAGGYTGATGAGCTGGAGAGGAAGATTGAGTCAGTGAAGAGAGCAGCACTGAACGCTCAGAATGAAGGCGTCGAGTTGGAGAAGAGACTGGACGATTTGATTGGAATTGTGGCACAGGCGGAGAATGAGCTGGAGCAGGCTGCTCCAATTGCAGCCGACTCGCAGAAGCTACACGAGGAGCTCAAGAGAGCTGACGACGTGTTCCAGAAGCTCTTGGAGAACGAAGGAGAGGTGTCACTGATAAGAGCGAAGGTTGCAGAGGAGTTGAAGAAGAAGCCGGATGTGGAGCTGAAGAAGAAGGTGGAGATGTTGAATTCAAAATGGCCCAAGGCTCTGGGAGCAGCTAGAGATCGAAAGGATTTGGTGACGAAGGCTGGAGACTTGGTGAAGCTCTTCGGAGAGTCAGAAGGAGCTCTCGAGCAGAGACTCCAAGGAGATCAGAGTGGTTTGGAGGAGCTATTGGATAGAATTCAGGATCCTGAAGCGCTGGACGCTCTGAAGCTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>234 117 70 66 56 53 45 45 44 36 30 22 22 20 19 17 15 14 12 12 12 10 10 8 7 4</canonical_bands>
                <polymorphic_bands>234 117 70 66 56 53 45 45 44 36 30 30 22 20 19 17 15 14 12 12 12 10 10 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCTCGACTCCCTGAAATC</pcr_primer_p1>
		<pcr_primer_p2>AATCAAATCGTCCAGTCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACTCTCGACTCCCTGAAATCCCGTTTTGGAGGTGTTGATGCGGCACTGGAGAAGCTGAAGACGATTCTAGAAGCCACCGATGATCTAGAAGTGGACTCAACGAATCGAGCAGAGATTCAGGAGCAGCTGGAGAGCACGCAGAAGAAGGCTGATGAGCTGGAGAGGAAGATTGAGTCAGTGAAGAGAGCAGCACTGAACGCTCAGAATGAAGGCGTCGAGTTGGAGAAGAGACTGGACGATTTGATT</canonical_amplicon>
		<polymorphic_amplicon>ACTCTCGACTCCCTGAAATCCCGTTTTGGAGGTGTTGATGCGGCACTGGAGAAGCTGAAGACGATTCTAGAAGCCACCGATGATCTAGAAGTGGACTCAACGAATCGAGCAGAGATTCAGGAGCAGCTGGAGAGCACGCAGAAGAAGGYTGATGAGCTGGAGAGGAAGATTGAGTCAGTGAAGAGAGCAGCACTGAACGCTCAGAATGAAGGCGTCGAGTTGGAGAAGAGACTGGACGATTTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15059</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>369026</contig_pos>
        <strand>+</strand>
        <context>GAAGAGATTA[A/C]TGTACCTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGTAGCTTCAGATGGTCGATTGTCTAAAAAGCAAAGGCTAGAAGAGATTA</left_flank>
        <right_flank>TGTACCTTCAGAGGAGGGTTGATATCTAGAGAATTGAATTCTGGAGATTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCCATGGATACCATCCTGAGGACCCTAAGGATCCAGGATATAGGATTATAGAGGATGCCCTAAAAAGCCTATTTCCATTCCAGGTGGCAAACGAGATGGAACGAACGCGCCCACGCATCGAAGCCCTCTCCATCGCCGGACAACAACTGGCTGGATACGTTCCAGACGACGAGAAGGCTGTAATTGAGAATCAGGTGGCAAACGTCCGAGGTGGATTCTCCACGATCACTGGTCTGTTCGCCGAAAAGAAGAGAGATCTGATTGCGGCGATGGAAGAGGCGATGGCATTCCATGGAGACTTGGAAGCACTCATGAAGTGGTTGGATAAGGCTGAGCAACGAATGGCCAAGATGGCGCCGGTTGAGCAGGCGAAACAGATGAACGAGATTGGACAGTTGTTGGATGAGTTGCATAGGTTAGTGGTTGGGGGAGGCTTCGGGAGGGTTACTGTAGCTTCAGATGGTCGATTGTCTAAAAAGCAAAGGCTAGAAGAGATTAATGTACCTTCAGAGGAGGGTTGATATCTAGAGAATTGAATTCTGGAGATTGAGAATACTGTAGCTAGGAAGAAATAATGATTTTGGCTAGATAAACCTGCCCTAAGTTTCTGTACCATAGCCTGGGTTACTGTAGCCTTGGAGTCTCGGTGGTGGACCTGTGGACAGTTCTAGACAATCTTTGAGATTGGGATTACTGTAGCTAGGAGGTAACCTAGATTTCGTTGCAAGGTTACTGTAGGGATACTTTACTCCAGGCGAGTTTAGGACGGCTTGTGAAAACTGAAACAGGAGGATTCTGAATGATTTTAGAAGATTCTAGAAGATCCTGAATGACTCGTGAAAGGCTTCTAGAGGATTATAAACGATTCTAGACGATTCGAGAGGATTCTAGAGGATTCTAGAGGGTTCTAGAACATCCCAGAGGAGCATTTTAGAGGAATCTAGAGGATTCTGAAGAATTCTAGACGATCCGAGACGACGCACAGACAGTTTTCAGAAC</canonical>
            <polymorphic>GTCCATGGATACCATCCTGAGGACCCTAAGGATCCAGGATATAGGATTATAGAGGATGCCCTAAAAAGCCTATTTCCATTCCAGGTGGCAAACGAGATGGAACGAACGCGCCCACGCATCGAAGCCCTCTCCATCGCCGGACAACAACTGGCTGGATACGTTCCAGACGACGAGAAGGCTGTAATTGAGAATCAGGTGGCAAACGTCCGAGGTGGATTCTCCACGATCACTGGTCTGTTCGCCGAAAAGAAGAGAGATCTGATTGCGGCGATGGAAGAGGCGATGGCATTCCATGGAGACTTGGAAGCACTCATGAAGTGGTTGGATAAGGCTGAGCAACGAATGGCCAAGATGGCGCCGGTTGAGCAGGCGAAACAGATGAACGAGATTGGACAGTTGTTGGATGAGTTGCATAGGTTAGTGGTTGGGGGAGGCTTCGGGAGGGTTACTGTAGCTTCAGATGGTCGATTGTCTAAAAAGCAAAGGCTAGAAGAGATTAMTGTACCTTCAGAGGAGGGTTGATATCTAGAGAATTGAATTCTGGAGATTGAGAATACTGTAGCTAGGAAGAAATAATGATTTTGGCTAGATAAACCTGCCCTAAGTTTCTGTACCATAGCCTGGGTTACTGTAGCCTTGGAGTCTCGGTGGTGGACCTGTGGACAGTTCTAGACAATCTTTGAGATTGGGATTACTGTAGCTAGGAGGTAACCTAGATTTCGTTGCAAGGTTACTGTAGGGATACTTTACTCCAGGCGAGTTTAGGACGGCTTGTGAAAACTGAAACAGGAGGATTCTGAATGATTTTAGAAGATTCTAGAAGATCCTGAATGACTCGTGAAAGGCTTCTAGAGGATTATAAACGATTCTAGACGATTCGAGAGGATTCTAGAGGATTCTAGAGGGTTCTAGAACATCCCAGAGGAGCATTTTAGAGGAATCTAGAGGATTCTGAAGAATTCTAGACGATCCGAGACGACGCACAGACAGTTTTCAGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTACTGTAGCTTCAGATGGT</pcr_primer_p1>
		<pcr_primer_p2>TACAGTAATCCCAATCTCAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>GGTTACTGTAGCTTCAGATGGTCGATTGTCTAAAAAGCAAAGGCTAGAAGAGATTAATGTACCTTCAGAGGAGGGTTGATATCTAGAGAATTGAATTCTGGAGATTGAGAATACTGTAGCTAGGAAGAAATAATGATTTTGGCTAGATAAACCTGCCCTAAGTTTCTGTACCATAGCCTGGGTTACTGTAGCCTTGGAGTCTCGGTGGTGGACCTGTGGACAGTTCTAGACAATCTTTGAGATTGGGATTACTGTA</canonical_amplicon>
		<polymorphic_amplicon>GGTTACTGTAGCTTCAGATGGTCGATTGTCTAAAAAGCAAAGGCTAGAAGAGATTAMTGTACCTTCAGAGGAGGGTTGATATCTAGAGAATTGAATTCTGGAGATTGAGAATACTGTAGCTAGGAAGAAATAATGATTTTGGCTAGATAAACCTGCCCTAAGTTTCTGTACCATAGCCTGGGTTACTGTAGCCTTGGAGTCTCGGTGGTGGACCTGTGGACAGTTCTAGACAATCTTTGAGATTGGGATTACTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15060</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>369048</contig_pos>
        <strand>+</strand>
        <context>AGGAGGGTTG[A/C]TATCTAGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTAAAAAGCAAAGGCTAGAAGAGATTAATGTACCTTCAGAGGAGGGTTG</left_flank>
        <right_flank>TATCTAGAGAATTGAATTCTGGAGATTGAGAATACTGTAGCTAGGAAGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCCTAAGGATCCAGGATATAGGATTATAGAGGATGCCCTAAAAAGCCTATTTCCATTCCAGGTGGCAAACGAGATGGAACGAACGCGCCCACGCATCGAAGCCCTCTCCATCGCCGGACAACAACTGGCTGGATACGTTCCAGACGACGAGAAGGCTGTAATTGAGAATCAGGTGGCAAACGTCCGAGGTGGATTCTCCACGATCACTGGTCTGTTCGCCGAAAAGAAGAGAGATCTGATTGCGGCGATGGAAGAGGCGATGGCATTCCATGGAGACTTGGAAGCACTCATGAAGTGGTTGGATAAGGCTGAGCAACGAATGGCCAAGATGGCGCCGGTTGAGCAGGCGAAACAGATGAACGAGATTGGACAGTTGTTGGATGAGTTGCATAGGTTAGTGGTTGGGGGAGGCTTCGGGAGGGTTACTGTAGCTTCAGATGGTCGATTGTCTAAAAAGCAAAGGCTAGAAGAGATTAATGTACCTTCAGAGGAGGGTTGATATCTAGAGAATTGAATTCTGGAGATTGAGAATACTGTAGCTAGGAAGAAATAATGATTTTGGCTAGATAAACCTGCCCTAAGTTTCTGTACCATAGCCTGGGTTACTGTAGCCTTGGAGTCTCGGTGGTGGACCTGTGGACAGTTCTAGACAATCTTTGAGATTGGGATTACTGTAGCTAGGAGGTAACCTAGATTTCGTTGCAAGGTTACTGTAGGGATACTTTACTCCAGGCGAGTTTAGGACGGCTTGTGAAAACTGAAACAGGAGGATTCTGAATGATTTTAGAAGATTCTAGAAGATCCTGAATGACTCGTGAAAGGCTTCTAGAGGATTATAAACGATTCTAGACGATTCGAGAGGATTCTAGAGGATTCTAGAGGGTTCTAGAACATCCCAGAGGAGCATTTTAGAGGAATCTAGAGGATTCTGAAGAATTCTAGACGATCCGAGACGACGCACAGACAGTTTTCAGAACTCCTAATTTCCGTATTTGTTGC</canonical>
            <polymorphic>ACCCTAAGGATCCAGGATATAGGATTATAGAGGATGCCCTAAAAAGCCTATTTCCATTCCAGGTGGCAAACGAGATGGAACGAACGCGCCCACGCATCGAAGCCCTCTCCATCGCCGGACAACAACTGGCTGGATACGTTCCAGACGACGAGAAGGCTGTAATTGAGAATCAGGTGGCAAACGTCCGAGGTGGATTCTCCACGATCACTGGTCTGTTCGCCGAAAAGAAGAGAGATCTGATTGCGGCGATGGAAGAGGCGATGGCATTCCATGGAGACTTGGAAGCACTCATGAAGTGGTTGGATAAGGCTGAGCAACGAATGGCCAAGATGGCGCCGGTTGAGCAGGCGAAACAGATGAACGAGATTGGACAGTTGTTGGATGAGTTGCATAGGTTAGTGGTTGGGGGAGGCTTCGGGAGGGTTACTGTAGCTTCAGATGGTCGATTGTCTAAAAAGCAAAGGCTAGAAGAGATTAATGTACCTTCAGAGGAGGGTTGMTATCTAGAGAATTGAATTCTGGAGATTGAGAATACTGTAGCTAGGAAGAAATAATGATTTTGGCTAGATAAACCTGCCCTAAGTTTCTGTACCATAGCCTGGGTTACTGTAGCCTTGGAGTCTCGGTGGTGGACCTGTGGACAGTTCTAGACAATCTTTGAGATTGGGATTACTGTAGCTAGGAGGTAACCTAGATTTCGTTGCAAGGTTACTGTAGGGATACTTTACTCCAGGCGAGTTTAGGACGGCTTGTGAAAACTGAAACAGGAGGATTCTGAATGATTTTAGAAGATTCTAGAAGATCCTGAATGACTCGTGAAAGGCTTCTAGAGGATTATAAACGATTCTAGACGATTCGAGAGGATTCTAGAGGATTCTAGAGGGTTCTAGAACATCCCAGAGGAGCATTTTAGAGGAATCTAGAGGATTCTGAAGAATTCTAGACGATCCGAGACGACGCACAGACAGTTTTCAGAACTCCTAATTTCCGTATTTGTTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATGGTCGATTGTCTAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CCTAGCTACAGTAATCCCAATCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGATGGTCGATTGTCTAAAAAGCAAAGGCTAGAAGAGATTAATGTACCTTCAGAGGAGGGTTGATATCTAGAGAATTGAATTCTGGAGATTGAGAATACTGTAGCTAGGAAGAAATAATGATTTTGGCTAGATAAACCTGCCCTAAGTTTCTGTACCATAGCCTGGGTTACTGTAGCCTTGGAGTCTCGGTGGTGGACCTGTGGACAGTTCTAGACAATCTTTGAGATTGGGATTACTGTAGCTAGG</canonical_amplicon>
		<polymorphic_amplicon>AGATGGTCGATTGTCTAAAAAGCAAAGGCTAGAAGAGATTAATGTACCTTCAGAGGAGGGTTGMTATCTAGAGAATTGAATTCTGGAGATTGAGAATACTGTAGCTAGGAAGAAATAATGATTTTGGCTAGATAAACCTGCCCTAAGTTTCTGTACCATAGCCTGGGTTACTGTAGCCTTGGAGTCTCGGTGGTGGACCTGTGGACAGTTCTAGACAATCTTTGAGATTGGGATTACTGTAGCTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15061</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>369077</contig_pos>
        <strand>+</strand>
        <context>CTGGAGATTG[A/G]GAATACTGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTACCTTCAGAGGAGGGTTGATATCTAGAGAATTGAATTCTGGAGATTG</left_flank>
        <right_flank>GAATACTGTAGCTAGGAAGAAATAATGATTTTGGCTAGATAAACCTGCCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGATGCCCTAAAAAGCCTATTTCCATTCCAGGTGGCAAACGAGATGGAACGAACGCGCCCACGCATCGAAGCCCTCTCCATCGCCGGACAACAACTGGCTGGATACGTTCCAGACGACGAGAAGGCTGTAATTGAGAATCAGGTGGCAAACGTCCGAGGTGGATTCTCCACGATCACTGGTCTGTTCGCCGAAAAGAAGAGAGATCTGATTGCGGCGATGGAAGAGGCGATGGCATTCCATGGAGACTTGGAAGCACTCATGAAGTGGTTGGATAAGGCTGAGCAACGAATGGCCAAGATGGCGCCGGTTGAGCAGGCGAAACAGATGAACGAGATTGGACAGTTGTTGGATGAGTTGCATAGGTTAGTGGTTGGGGGAGGCTTCGGGAGGGTTACTGTAGCTTCAGATGGTCGATTGTCTAAAAAGCAAAGGCTAGAAGAGATTAATGTACCTTCAGAGGAGGGTTGATATCTAGAGAATTGAATTCTGGAGATTGAGAATACTGTAGCTAGGAAGAAATAATGATTTTGGCTAGATAAACCTGCCCTAAGTTTCTGTACCATAGCCTGGGTTACTGTAGCCTTGGAGTCTCGGTGGTGGACCTGTGGACAGTTCTAGACAATCTTTGAGATTGGGATTACTGTAGCTAGGAGGTAACCTAGATTTCGTTGCAAGGTTACTGTAGGGATACTTTACTCCAGGCGAGTTTAGGACGGCTTGTGAAAACTGAAACAGGAGGATTCTGAATGATTTTAGAAGATTCTAGAAGATCCTGAATGACTCGTGAAAGGCTTCTAGAGGATTATAAACGATTCTAGACGATTCGAGAGGATTCTAGAGGATTCTAGAGGGTTCTAGAACATCCCAGAGGAGCATTTTAGAGGAATCTAGAGGATTCTGAAGAATTCTAGACGATCCGAGACGACGCACAGACAGTTTTCAGAACTCCTAATTTCCGTATTTGTTGCAGATTCAAAGACGAAGTTGACGAACGAGG</canonical>
            <polymorphic>GAGGATGCCCTAAAAAGCCTATTTCCATTCCAGGTGGCAAACGAGATGGAACGAACGCGCCCACGCATCGAAGCCCTCTCCATCGCCGGACAACAACTGGCTGGATACGTTCCAGACGACGAGAAGGCTGTAATTGAGAATCAGGTGGCAAACGTCCGAGGTGGATTCTCCACGATCACTGGTCTGTTCGCCGAAAAGAAGAGAGATCTGATTGCGGCGATGGAAGAGGCGATGGCATTCCATGGAGACTTGGAAGCACTCATGAAGTGGTTGGATAAGGCTGAGCAACGAATGGCCAAGATGGCGCCGGTTGAGCAGGCGAAACAGATGAACGAGATTGGACAGTTGTTGGATGAGTTGCATAGGTTAGTGGTTGGGGGAGGCTTCGGGAGGGTTACTGTAGCTTCAGATGGTCGATTGTCTAAAAAGCAAAGGCTAGAAGAGATTAATGTACCTTCAGAGGAGGGTTGATATCTAGAGAATTGAATTCTGGAGATTGRGAATACTGTAGCTAGGAAGAAATAATGATTTTGGCTAGATAAACCTGCCCTAAGTTTCTGTACCATAGCCTGGGTTACTGTAGCCTTGGAGTCTCGGTGGTGGACCTGTGGACAGTTCTAGACAATCTTTGAGATTGGGATTACTGTAGCTAGGAGGTAACCTAGATTTCGTTGCAAGGTTACTGTAGGGATACTTTACTCCAGGCGAGTTTAGGACGGCTTGTGAAAACTGAAACAGGAGGATTCTGAATGATTTTAGAAGATTCTAGAAGATCCTGAATGACTCGTGAAAGGCTTCTAGAGGATTATAAACGATTCTAGACGATTCGAGAGGATTCTAGAGGATTCTAGAGGGTTCTAGAACATCCCAGAGGAGCATTTTAGAGGAATCTAGAGGATTCTGAAGAATTCTAGACGATCCGAGACGACGCACAGACAGTTTTCAGAACTCCTAATTTCCGTATTTGTTGCAGATTCAAAGACGAAGTTGACGAACGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGCAAAGGCTAGAAGAGATTA</pcr_primer_p1>
		<pcr_primer_p2>AACGAAATCTAGGTTACCTCCTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAGCAAAGGCTAGAAGAGATTAATGTACCTTCAGAGGAGGGTTGATATCTAGAGAATTGAATTCTGGAGATTGAGAATACTGTAGCTAGGAAGAAATAATGATTTTGGCTAGATAAACCTGCCCTAAGTTTCTGTACCATAGCCTGGGTTACTGTAGCCTTGGAGTCTCGGTGGTGGACCTGTGGACAGTTCTAGACAATCTTTGAGATTGGGATTACTGTAGCTAGGAGGTAACCTAGATTTCGTT</canonical_amplicon>
		<polymorphic_amplicon>AAAGCAAAGGCTAGAAGAGATTAATGTACCTTCAGAGGAGGGTTGATATCTAGAGAATTGAATTCTGGAGATTGRGAATACTGTAGCTAGGAAGAAATAATGATTTTGGCTAGATAAACCTGCCCTAAGTTTCTGTACCATAGCCTGGGTTACTGTAGCCTTGGAGTCTCGGTGGTGGACCTGTGGACAGTTCTAGACAATCTTTGAGATTGGGATTACTGTAGCTAGGAGGTAACCTAGATTTCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15062</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>369134</contig_pos>
        <strand>+</strand>
        <context>GCCCTAAGTT[A/T]CTGTASCATA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTAGCTAGGAAGAAATAATGATTTTGGCTAGATAAACCTGCCCTAAGTT</left_flank>
        <right_flank>CTGTACCATAGCCTGGGTTACTGTAGCCTTGGAGTCTCGGTGGTGGACCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCCCACGCATCGAAGCCCTCTCCATCGCCGGACAACAACTGGCTGGATACGTTCCAGACGACGAGAAGGCTGTAATTGAGAATCAGGTGGCAAACGTCCGAGGTGGATTCTCCACGATCACTGGTCTGTTCGCCGAAAAGAAGAGAGATCTGATTGCGGCGATGGAAGAGGCGATGGCATTCCATGGAGACTTGGAAGCACTCATGAAGTGGTTGGATAAGGCTGAGCAACGAATGGCCAAGATGGCGCCGGTTGAGCAGGCGAAACAGATGAACGAGATTGGACAGTTGTTGGATGAGTTGCATAGGTTAGTGGTTGGGGGAGGCTTCGGGAGGGTTACTGTAGCTTCAGATGGTCGATTGTCTAAAAAGCAAAGGCTAGAAGAGATTAATGTACCTTCAGAGGAGGGTTGATATCTAGAGAATTGAATTCTGGAGATTGAGAATACTGTAGCTAGGAAGAAATAATGATTTTGGCTAGATAAACCTGCCCTAAGTTTCTGTACCATAGCCTGGGTTACTGTAGCCTTGGAGTCTCGGTGGTGGACCTGTGGACAGTTCTAGACAATCTTTGAGATTGGGATTACTGTAGCTAGGAGGTAACCTAGATTTCGTTGCAAGGTTACTGTAGGGATACTTTACTCCAGGCGAGTTTAGGACGGCTTGTGAAAACTGAAACAGGAGGATTCTGAATGATTTTAGAAGATTCTAGAAGATCCTGAATGACTCGTGAAAGGCTTCTAGAGGATTATAAACGATTCTAGACGATTCGAGAGGATTCTAGAGGATTCTAGAGGGTTCTAGAACATCCCAGAGGAGCATTTTAGAGGAATCTAGAGGATTCTGAAGAATTCTAGACGATCCGAGACGACGCACAGACAGTTTTCAGAACTCCTAATTTCCGTATTTGTTGCAGATTCAAAGACGAAGTTGACGAACGAGGTGTCGCCAAAGAGCAAGTCGTCACGACGGCTCTCCAACTCGCCGCCGACGCTCCGCC</canonical>
            <polymorphic>CGCCCACGCATCGAAGCCCTCTCCATCGCCGGACAACAACTGGCTGGATACGTTCCAGACGACGAGAAGGCTGTAATTGAGAATCAGGTGGCAAACGTCCGAGGTGGATTCTCCACGATCACTGGTCTGTTCGCCGAAAAGAAGAGAGATCTGATTGCGGCGATGGAAGAGGCGATGGCATTCCATGGAGACTTGGAAGCACTCATGAAGTGGTTGGATAAGGCTGAGCAACGAATGGCCAAGATGGCGCCGGTTGAGCAGGCGAAACAGATGAACGAGATTGGACAGTTGTTGGATGAGTTGCATAGGTTAGTGGTTGGGGGAGGCTTCGGGAGGGTTACTGTAGCTTCAGATGGTCGATTGTCTAAAAAGCAAAGGCTAGAAGAGATTAATGTACCTTCAGAGGAGGGTTGATATCTAGAGAATTGAATTCTGGAGATTGAGAATACTGTAGCTAGGAAGAAATAATGATTTTGGCTAGATAAACCTGCCCTAAGTTWCTGTACCATAGCCTGGGTTACTGTAGCCTTGGAGTCTCGGTGGTGGACCTGTGGACAGTTCTAGACAATCTTTGAGATTGGGATTACTGTAGCTAGGAGGTAACCTAGATTTCGTTGCAAGGTTACTGTAGGGATACTTTACTCCAGGCGAGTTTAGGACGGCTTGTGAAAACTGAAACAGGAGGATTCTGAATGATTTTAGAAGATTCTAGAAGATCCTGAATGACTCGTGAAAGGCTTCTAGAGGATTATAAACGATTCTAGACGATTCGAGAGGATTCTAGAGGATTCTAGAGGGTTCTAGAACATCCCAGAGGAGCATTTTAGAGGAATCTAGAGGATTCTGAAGAATTCTAGACGATCCGAGACGACGCACAGACAGTTTTCAGAACTCCTAATTTCCGTATTTGTTGCAGATTCAAAGACGAAGTTGACGAACGAGGTGTCGCCAAAGAGCAAGTCGTCACGACGGCTCTCCAACTCGCCGCCGACGCTCCGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGCAAAGGCTAGAAGAGATTA</pcr_primer_p1>
		<pcr_primer_p2>AACGAAATCTAGGTTACCTCCTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAGCAAAGGCTAGAAGAGATTAATGTACCTTCAGAGGAGGGTTGATATCTAGAGAATTGAATTCTGGAGATTGAGAATACTGTAGCTAGGAAGAAATAATGATTTTGGCTAGATAAACCTGCCCTAAGTTTCTGTACCATAGCCTGGGTTACTGTAGCCTTGGAGTCTCGGTGGTGGACCTGTGGACAGTTCTAGACAATCTTTGAGATTGGGATTACTGTAGCTAGGAGGTAACCTAGATTTCGTT</canonical_amplicon>
		<polymorphic_amplicon>AAAGCAAAGGCTAGAAGAGATTAATGTACCTTCAGAGGAGGGTTGATATCTAGAGAATTGAATTCTGGAGATTGAGAATACTGTAGCTAGGAAGAAATAATGATTTTGGCTAGATAAACCTGCCCTAAGTTWCTGTACCATAGCCTGGGTTACTGTAGCCTTGGAGTCTCGGTGGTGGACCTGTGGACAGTTCTAGACAATCTTTGAGATTGGGATTACTGTAGCTAGGAGGTAACCTAGATTTCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15063</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>369140</contig_pos>
        <strand>+</strand>
        <context>AGTTWCTGTA[C/G]CATAGCCTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAGGAAGAAATAATGATTTTGGCTAGATAAACCTGCCCTAAGTTTCTGTA</left_flank>
        <right_flank>CATAGCCTGGGTTACTGTAGCCTTGGAGTCTCGGTGGTGGACCTGTGGAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCATCGAAGCCCTCTCCATCGCCGGACAACAACTGGCTGGATACGTTCCAGACGACGAGAAGGCTGTAATTGAGAATCAGGTGGCAAACGTCCGAGGTGGATTCTCCACGATCACTGGTCTGTTCGCCGAAAAGAAGAGAGATCTGATTGCGGCGATGGAAGAGGCGATGGCATTCCATGGAGACTTGGAAGCACTCATGAAGTGGTTGGATAAGGCTGAGCAACGAATGGCCAAGATGGCGCCGGTTGAGCAGGCGAAACAGATGAACGAGATTGGACAGTTGTTGGATGAGTTGCATAGGTTAGTGGTTGGGGGAGGCTTCGGGAGGGTTACTGTAGCTTCAGATGGTCGATTGTCTAAAAAGCAAAGGCTAGAAGAGATTAATGTACCTTCAGAGGAGGGTTGATATCTAGAGAATTGAATTCTGGAGATTGAGAATACTGTAGCTAGGAAGAAATAATGATTTTGGCTAGATAAACCTGCCCTAAGTTTCTGTACCATAGCCTGGGTTACTGTAGCCTTGGAGTCTCGGTGGTGGACCTGTGGACAGTTCTAGACAATCTTTGAGATTGGGATTACTGTAGCTAGGAGGTAACCTAGATTTCGTTGCAAGGTTACTGTAGGGATACTTTACTCCAGGCGAGTTTAGGACGGCTTGTGAAAACTGAAACAGGAGGATTCTGAATGATTTTAGAAGATTCTAGAAGATCCTGAATGACTCGTGAAAGGCTTCTAGAGGATTATAAACGATTCTAGACGATTCGAGAGGATTCTAGAGGATTCTAGAGGGTTCTAGAACATCCCAGAGGAGCATTTTAGAGGAATCTAGAGGATTCTGAAGAATTCTAGACGATCCGAGACGACGCACAGACAGTTTTCAGAACTCCTAATTTCCGTATTTGTTGCAGATTCAAAGACGAAGTTGACGAACGAGGTGTCGCCAAAGAGCAAGTCGTCACGACGGCTCTCCAACTCGCCGCCGACGCTCCGCCCCATTT</canonical>
            <polymorphic>CGCATCGAAGCCCTCTCCATCGCCGGACAACAACTGGCTGGATACGTTCCAGACGACGAGAAGGCTGTAATTGAGAATCAGGTGGCAAACGTCCGAGGTGGATTCTCCACGATCACTGGTCTGTTCGCCGAAAAGAAGAGAGATCTGATTGCGGCGATGGAAGAGGCGATGGCATTCCATGGAGACTTGGAAGCACTCATGAAGTGGTTGGATAAGGCTGAGCAACGAATGGCCAAGATGGCGCCGGTTGAGCAGGCGAAACAGATGAACGAGATTGGACAGTTGTTGGATGAGTTGCATAGGTTAGTGGTTGGGGGAGGCTTCGGGAGGGTTACTGTAGCTTCAGATGGTCGATTGTCTAAAAAGCAAAGGCTAGAAGAGATTAATGTACCTTCAGAGGAGGGTTGATATCTAGAGAATTGAATTCTGGAGATTGAGAATACTGTAGCTAGGAAGAAATAATGATTTTGGCTAGATAAACCTGCCCTAAGTTTCTGTASCATAGCCTGGGTTACTGTAGCCTTGGAGTCTCGGTGGTGGACCTGTGGACAGTTCTAGACAATCTTTGAGATTGGGATTACTGTAGCTAGGAGGTAACCTAGATTTCGTTGCAAGGTTACTGTAGGGATACTTTACTCCAGGCGAGTTTAGGACGGCTTGTGAAAACTGAAACAGGAGGATTCTGAATGATTTTAGAAGATTCTAGAAGATCCTGAATGACTCGTGAAAGGCTTCTAGAGGATTATAAACGATTCTAGACGATTCGAGAGGATTCTAGAGGATTCTAGAGGGTTCTAGAACATCCCAGAGGAGCATTTTAGAGGAATCTAGAGGATTCTGAAGAATTCTAGACGATCCGAGACGACGCACAGACAGTTTTCAGAACTCCTAATTTCCGTATTTGTTGCAGATTCAAAGACGAAGTTGACGAACGAGGTGTCGCCAAAGAGCAAGTCGTCACGACGGCTCTCCAACTCGCCGCCGACGCTCCGCCCCATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNTGG</site>
                <isoschizomers>
                    <enzyme>AccB7I</enzyme>
                    <enzyme>PflBI</enzyme>
                    <enzyme>PflMI</enzyme>
                    <enzyme>Van91I</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 389 109</canonical_bands>
                <polymorphic_bands>611 389</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGCAAAGGCTAGAAGAGATTA</pcr_primer_p1>
		<pcr_primer_p2>AACGAAATCTAGGTTACCTCCTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAGCAAAGGCTAGAAGAGATTAATGTACCTTCAGAGGAGGGTTGATATCTAGAGAATTGAATTCTGGAGATTGAGAATACTGTAGCTAGGAAGAAATAATGATTTTGGCTAGATAAACCTGCCCTAAGTTTCTGTACCATAGCCTGGGTTACTGTAGCCTTGGAGTCTCGGTGGTGGACCTGTGGACAGTTCTAGACAATCTTTGAGATTGGGATTACTGTAGCTAGGAGGTAACCTAGATTTCGTT</canonical_amplicon>
		<polymorphic_amplicon>AAAGCAAAGGCTAGAAGAGATTAATGTACCTTCAGAGGAGGGTTGATATCTAGAGAATTGAATTCTGGAGATTGAGAATACTGTAGCTAGGAAGAAATAATGATTTTGGCTAGATAAACCTGCCCTAAGTTTCTGTASCATAGCCTGGGTTACTGTAGCCTTGGAGTCTCGGTGGTGGACCTGTGGACAGTTCTAGACAATCTTTGAGATTGGGATTACTGTAGCTAGGAGGTAACCTAGATTTCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15064</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>369162</contig_pos>
        <strand>+</strand>
        <context>TTACTGTAGC[C/T]TTGGAGTCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAGATAAACCTGCCCTAAGTTTCTGTACCATAGCCTGGGTTACTGTAGC</left_flank>
        <right_flank>TTGGAGTCTCGGTGGTGGACCTGTGGACAGTTCTAGACAATCTTTGAGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGGACAACAACTGGCTGGATACGTTCCAGACGACGAGAAGGCTGTAATTGAGAATCAGGTGGCAAACGTCCGAGGTGGATTCTCCACGATCACTGGTCTGTTCGCCGAAAAGAAGAGAGATCTGATTGCGGCGATGGAAGAGGCGATGGCATTCCATGGAGACTTGGAAGCACTCATGAAGTGGTTGGATAAGGCTGAGCAACGAATGGCCAAGATGGCGCCGGTTGAGCAGGCGAAACAGATGAACGAGATTGGACAGTTGTTGGATGAGTTGCATAGGTTAGTGGTTGGGGGAGGCTTCGGGAGGGTTACTGTAGCTTCAGATGGTCGATTGTCTAAAAAGCAAAGGCTAGAAGAGATTAATGTACCTTCAGAGGAGGGTTGATATCTAGAGAATTGAATTCTGGAGATTGAGAATACTGTAGCTAGGAAGAAATAATGATTTTGGCTAGATAAACCTGCCCTAAGTTTCTGTACCATAGCCTGGGTTACTGTAGCCTTGGAGTCTCGGTGGTGGACCTGTGGACAGTTCTAGACAATCTTTGAGATTGGGATTACTGTAGCTAGGAGGTAACCTAGATTTCGTTGCAAGGTTACTGTAGGGATACTTTACTCCAGGCGAGTTTAGGACGGCTTGTGAAAACTGAAACAGGAGGATTCTGAATGATTTTAGAAGATTCTAGAAGATCCTGAATGACTCGTGAAAGGCTTCTAGAGGATTATAAACGATTCTAGACGATTCGAGAGGATTCTAGAGGATTCTAGAGGGTTCTAGAACATCCCAGAGGAGCATTTTAGAGGAATCTAGAGGATTCTGAAGAATTCTAGACGATCCGAGACGACGCACAGACAGTTTTCAGAACTCCTAATTTCCGTATTTGTTGCAGATTCAAAGACGAAGTTGACGAACGAGGTGTCGCCAAAGAGCAAGTCGTCACGACGGCTCTCCAACTCGCCGCCGACGCTCCGCCCCATTTGGCAGCTACAGTAAGACAACCG</canonical>
            <polymorphic>CCGGACAACAACTGGCTGGATACGTTCCAGACGACGAGAAGGCTGTAATTGAGAATCAGGTGGCAAACGTCCGAGGTGGATTCTCCACGATCACTGGTCTGTTCGCCGAAAAGAAGAGAGATCTGATTGCGGCGATGGAAGAGGCGATGGCATTCCATGGAGACTTGGAAGCACTCATGAAGTGGTTGGATAAGGCTGAGCAACGAATGGCCAAGATGGCGCCGGTTGAGCAGGCGAAACAGATGAACGAGATTGGACAGTTGTTGGATGAGTTGCATAGGTTAGTGGTTGGGGGAGGCTTCGGGAGGGTTACTGTAGCTTCAGATGGTCGATTGTCTAAAAAGCAAAGGCTAGAAGAGATTAATGTACCTTCAGAGGAGGGTTGATATCTAGAGAATTGAATTCTGGAGATTGAGAATACTGTAGCTAGGAAGAAATAATGATTTTGGCTAGATAAACCTGCCCTAAGTTTCTGTACCATAGCCTGGGTTACTGTAGCYTTGGAGTCTCGGTGGTGGACCTGTGGACAGTTCTAGACAATCTTTGAGATTGGGATTACTGTAGCTAGGAGGTAACCTAGATTTCGTTGCAAGGTTACTGTAGGGATACTTTACTCCAGGCGAGTTTAGGACGGCTTGTGAAAACTGAAACAGGAGGATTCTGAATGATTTTAGAAGATTCTAGAAGATCCTGAATGACTCGTGAAAGGCTTCTAGAGGATTATAAACGATTCTAGACGATTCGAGAGGATTCTAGAGGATTCTAGAGGGTTCTAGAACATCCCAGAGGAGCATTTTAGAGGAATCTAGAGGATTCTGAAGAATTCTAGACGATCCGAGACGACGCACAGACAGTTTTCAGAACTCCTAATTTCCGTATTTGTTGCAGATTCAAAGACGAAGTTGACGAACGAGGTGTCGCCAAAGAGCAAGTCGTCACGACGGCTCTCCAACTCGCCGCCGACGCTCCGCCCCATTTGGCAGCTACAGTAAGACAACCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>501 329 84 71 15</canonical_bands>
                <polymorphic_bands>516 329 84 71</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>501 344 155</canonical_bands>
                <polymorphic_bands>845 155</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>235 153 88 76 75 70 66 39 34 32 27 23 20 17 15 15 15</canonical_bands>
                <polymorphic_bands>235 153 88 81 76 75 70 39 34 32 27 23 20 17 15 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGCAAAGGCTAGAAGAGATTA</pcr_primer_p1>
		<pcr_primer_p2>AACGAAATCTAGGTTACCTCCTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAGCAAAGGCTAGAAGAGATTAATGTACCTTCAGAGGAGGGTTGATATCTAGAGAATTGAATTCTGGAGATTGAGAATACTGTAGCTAGGAAGAAATAATGATTTTGGCTAGATAAACCTGCCCTAAGTTTCTGTACCATAGCCTGGGTTACTGTAGCCTTGGAGTCTCGGTGGTGGACCTGTGGACAGTTCTAGACAATCTTTGAGATTGGGATTACTGTAGCTAGGAGGTAACCTAGATTTCGTT</canonical_amplicon>
		<polymorphic_amplicon>AAAGCAAAGGCTAGAAGAGATTAATGTACCTTCAGAGGAGGGTTGATATCTAGAGAATTGAATTCTGGAGATTGAGAATACTGTAGCTAGGAAGAAATAATGATTTTGGCTAGATAAACCTGCCCTAAGTTTCTGTACCATAGCCTGGGTTACTGTAGCYTTGGAGTCTCGGTGGTGGACCTGTGGACAGTTCTAGACAATCTTTGAGATTGGGATTACTGTAGCTAGGAGGTAACCTAGATTTCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15065</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>370798</contig_pos>
        <strand>+</strand>
        <context>GGATTAATGT[A/G]GCTGGCAaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAACATTCTTCCTTTTTTTCTGGCTTTCGAAAAACTAGTCGGATTAATGT</left_flank>
        <right_flank>GCTGGCAAAAAAAATTACTGTAGTTTGAACTCTAAAATGTTGGATTACGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACGACACGTGGCTTGCAAAGACTCATGGAGTCATGAAGAGCAAGTGGAACAAGGTGAAAGAGCTACTGGTGGATCGGGAGAAGAAGCTACAGTTGGCCTATGAGCAAGCGGTTGCGTTGGAGCAAGCGTTGAATGATATGGAGGCGTGGATTGTTGGTGAGTGGTTTTAGGGGGTGGGCGGGGCTTAAAATTGCCAGAAATAGGCTCAAAAATGACCGAAAAACTGGAAAAAAAGGATTACACTGTAGCTGAAAATCTGAAAATTTCGAGTTAAACTGAGCCAAAATCGTCTCAAAAATGACCCTAAAATGACCCAAAACGAGTCGGATTACTGTAGCTAGAATAAGGGTTACTGTAACTATCTTCATATTCTGTATTTTCGTTTACTGTAAATTACTGTGAATTTTGGCTAAAATAGGGGTTACTGTGGCTAGATGAAGGATTACTGTAACATTCTTCCTTTTTTTCTGGCTTTCGAAAAACTAGTCGGATTAATGTGGCTGGCAAAAAAAATTACTGTAGTTTGAACTCTAAAATGTTGGATTACGGTCGCTAGAATGAGGATTACTGTAGCCGAAATATCGGTAAACTCGAAAATGTTGAATTACGGTAGCTGAAAAAATTATATGACTCAAAAAGAGTCAGATTACAGTAGCTGAAATGTGGGTTACTGTAGCTAGAATAAGGATTACTGTAACTTACTTGAAAAAATGACCAAAAATAGTCCAGAATGGGTCAGATTACTGTAGCTGGGAAAATGATTACGGTAGGGTACAGTTGACAGCTAAAACATGGATTACTGTAGCTAGAGTAAGGATTACGGTAGCTAAAACGGGATAAATCAGCTAAAACTTAGTTTACTGTACCTAGAACAGGAATTAGAGACCTGGACTACTGTAGTTCTCTCATTGCTCATCTTACATGTTAATGTAGCTCAAACAGGGATTAAGGTAGCTAAAACATAAATCAGTGCAACCAACATGAGGAGTACTGTAGCTG</canonical>
            <polymorphic>GACGACACGTGGCTTGCAAAGACTCATGGAGTCATGAAGAGCAAGTGGAACAAGGTGAAAGAGCTACTGGTGGATCGGGAGAAGAAGCTACAGTTGGCCTATGAGCAAGCGGTTGCGTTGGAGCAAGCGTTGAATGATATGGAGGCGTGGATTGTTGGTGAGTGGTTTTAGGGGGTGGGCGGGGCTTAAAATTGCCAGAAATAGGCTCAAAAATGACCGAAAAACTGGAAAAAAAGGATTACACTGTAGCTGAAAATCTGAAAATTTCGAGTTAAACTGAGCCAAAATCGTCTCAAAAATGACCCTAAAATGACCCAAAACGAGTCGGATTACTGTAGCTAGAATAAGGGTTACTGTAACTATCTTCATATTCTGTATTTTCGTTTACTGTAAATTACTGTGAATTTTGGCTAAAATAGGGGTTACTGTGGCTAGATGAAGGATTACTGTAACATTCTTCCTTTTTTTCTGGCTTTCGAAAAACTAGTCGGATTAATGTRGCTGGCAAAAAAAATTACTGTAGTTTGAACTCTAAAATGTTGGATTACGGTCGCTAGAATGAGGATTACTGTAGCCGAAATATCGGTAAACTCGAAAATGTTGAATTACGGTAGCTGAAAAAATTATATGACTCAAAAAGAGTCAGATTACAGTAGCTGAAATGTGGGTTACTGTAGCTAGAATAAGGATTACTGTAACTTACTTGAAAAAATGACCAAAAATAGTCCAGAATGGGTCAGATTACTGTAGCTGGGAAAATGATTACGGTAGGGTACAGTTGACAGCTAAAACATGGATTACTGTAGCTAGAGTAAGGATTACGGTAGCTAAAACGGGATAAATCAGCTAAAACTTAGTTTACTGTACCTAGAACAGGAATTAGAGACCTGGACTACTGTAGTTCTCTCATTGCTCATCTTACATGTTAATGTAGCTCAAACAGGGATTAAGGTAGCTAAAACATAAATCAGTGCAACCAACATGAGGAGTACTGTAGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>88 87 73 73 72 57 51 44 42 42 41 40 35 32 29 24 21 21 21 21 21 21 19 12 10 3</canonical_bands>
                <polymorphic_bands>102 88 87 73 72 57 51 44 42 42 41 40 35 32 24 21 21 21 21 21 21 19 12 10 3</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>307 166 159 77 70 66 36 28 27 15 13 11 10 7 4 4</canonical_bands>
                <polymorphic_bands>307 236 159 77 66 36 28 27 15 13 11 10 7 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTACTGTAACATTCTTCCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTAGCTACCGTAATCCTTACTCT</pcr_primer_p2>
		<pcr_amplicon_size>391</pcr_amplicon_size>
		<canonical_amplicon>GATTACTGTAACATTCTTCCTTTTTTTCTGGCTTTCGAAAAACTAGTCGGATTAATGTGGCTGGCAAAAAAAATTACTGTAGTTTGAACTCTAAAATGTTGGATTACGGTCGCTAGAATGAGGATTACTGTAGCCGAAATATCGGTAAACTCGAAAATGTTGAATTACGGTAGCTGAAAAAATTATATGACTCAAAAAGAGTCAGATTACAGTAGCTGAAATGTGGGTTACTGTAGCTAGAATAAGGATTACTGTAACTTACTTGAAAAAATGACCAAAAATAGTCCAGAATGGGTCAGATTACTGTAGCTGGGAAAATGATTACGGTAGGGTACAGTTGACAGCTAAAACATGGATTACTGTAGCTAGAGTAAGGATTACGGTAGCTAAA</canonical_amplicon>
		<polymorphic_amplicon>GATTACTGTAACATTCTTCCTTTTTTTCTGGCTTTCGAAAAACTAGTCGGATTAATGTRGCTGGCAAAAAAAATTACTGTAGTTTGAACTCTAAAATGTTGGATTACGGTCGCTAGAATGAGGATTACTGTAGCCGAAATATCGGTAAACTCGAAAATGTTGAATTACGGTAGCTGAAAAAATTATATGACTCAAAAAGAGTCAGATTACAGTAGCTGAAATGTGGGTTACTGTAGCTAGAATAAGGATTACTGTAACTTACTTGAAAAAATGACCAAAAATAGTCCAGAATGGGTCAGATTACTGTAGCTGGGAAAATGATTACGGTAGGGTACAGTTGACAGCTAAAACATGGATTACTGTAGCTAGAGTAAGGATTACGGTAGCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15066</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>370767</contig_pos>
        <strand>+</strand>
        <context>TCCTTTTTTT[C/T]TGGCTTTCGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGGTTACTGTGGCTAGATGAAGGATTACTGTAACATTCTTCCTTTTTTT</left_flank>
        <right_flank>TGGCTTTCGAAAAACTAGTCGGATTAATGTGGCTGGCAAAAAAAATTACT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGATATTTGAAGGATGAGGAATCGGTAGGAGACGACACGTGGCTTGCAAAGACTCATGGAGTCATGAAGAGCAAGTGGAACAAGGTGAAAGAGCTACTGGTGGATCGGGAGAAGAAGCTACAGTTGGCCTATGAGCAAGCGGTTGCGTTGGAGCAAGCGTTGAATGATATGGAGGCGTGGATTGTTGGTGAGTGGTTTTAGGGGGTGGGCGGGGCTTAAAATTGCCAGAAATAGGCTCAAAAATGACCGAAAAACTGGAAAAAAAGGATTACACTGTAGCTGAAAATCTGAAAATTTCGAGTTAAACTGAGCCAAAATCGTCTCAAAAATGACCCTAAAATGACCCAAAACGAGTCGGATTACTGTAGCTAGAATAAGGGTTACTGTAACTATCTTCATATTCTGTATTTTCGTTTACTGTAAATTACTGTGAATTTTGGCTAAAATAGGGGTTACTGTGGCTAGATGAAGGATTACTGTAACATTCTTCCTTTTTTTCTGGCTTTCGAAAAACTAGTCGGATTAATGTGGCTGGCAAAAAAAATTACTGTAGTTTGAACTCTAAAATGTTGGATTACGGTCGCTAGAATGAGGATTACTGTAGCCGAAATATCGGTAAACTCGAAAATGTTGAATTACGGTAGCTGAAAAAATTATATGACTCAAAAAGAGTCAGATTACAGTAGCTGAAATGTGGGTTACTGTAGCTAGAATAAGGATTACTGTAACTTACTTGAAAAAATGACCAAAAATAGTCCAGAATGGGTCAGATTACTGTAGCTGGGAAAATGATTACGGTAGGGTACAGTTGACAGCTAAAACATGGATTACTGTAGCTAGAGTAAGGATTACGGTAGCTAAAACGGGATAAATCAGCTAAAACTTAGTTTACTGTACCTAGAACAGGAATTAGAGACCTGGACTACTGTAGTTCTCTCATTGCTCATCTTACATGTTAATGTAGCTCAAACAGGGATTAAGGTAGCTAAAACATAAATC</canonical>
            <polymorphic>GAGATATTTGAAGGATGAGGAATCGGTAGGAGACGACACGTGGCTTGCAAAGACTCATGGAGTCATGAAGAGCAAGTGGAACAAGGTGAAAGAGCTACTGGTGGATCGGGAGAAGAAGCTACAGTTGGCCTATGAGCAAGCGGTTGCGTTGGAGCAAGCGTTGAATGATATGGAGGCGTGGATTGTTGGTGAGTGGTTTTAGGGGGTGGGCGGGGCTTAAAATTGCCAGAAATAGGCTCAAAAATGACCGAAAAACTGGAAAAAAAGGATTACACTGTAGCTGAAAATCTGAAAATTTCGAGTTAAACTGAGCCAAAATCGTCTCAAAAATGACCCTAAAATGACCCAAAACGAGTCGGATTACTGTAGCTAGAATAAGGGTTACTGTAACTATCTTCATATTCTGTATTTTCGTTTACTGTAAATTACTGTGAATTTTGGCTAAAATAGGGGTTACTGTGGCTAGATGAAGGATTACTGTAACATTCTTCCTTTTTTTYTGGCTTTCGAAAAACTAGTCGGATTAATGTGGCTGGCAAAAAAAATTACTGTAGTTTGAACTCTAAAATGTTGGATTACGGTCGCTAGAATGAGGATTACTGTAGCCGAAATATCGGTAAACTCGAAAATGTTGAATTACGGTAGCTGAAAAAATTATATGACTCAAAAAGAGTCAGATTACAGTAGCTGAAATGTGGGTTACTGTAGCTAGAATAAGGATTACTGTAACTTACTTGAAAAAATGACCAAAAATAGTCCAGAATGGGTCAGATTACTGTAGCTGGGAAAATGATTACGGTAGGGTACAGTTGACAGCTAAAACATGGATTACTGTAGCTAGAGTAAGGATTACGGTAGCTAAAACGGGATAAATCAGCTAAAACTTAGTTTACTGTACCTAGAACAGGAATTAGAGACCTGGACTACTGTAGTTCTCTCATTGCTCATCTTACATGTTAATGTAGCTCAAACAGGGATTAAGGTAGCTAAAACATAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTGTTGGTGAGTGGTTTTAG</pcr_primer_p1>
		<pcr_primer_p2>TTTAGCTACCGTAATCCTTACTCT</pcr_primer_p2>
		<pcr_amplicon_size>683</pcr_amplicon_size>
		<canonical_amplicon>GATTGTTGGTGAGTGGTTTTAGGGGGTGGGCGGGGCTTAAAATTGCCAGAAATAGGCTCAAAAATGACCGAAAAACTGGAAAAAAAGGATTACACTGTAGCTGAAAATCTGAAAATTTCGAGTTAAACTGAGCCAAAATCGTCTCAAAAATGACCCTAAAATGACCCAAAACGAGTCGGATTACTGTAGCTAGAATAAGGGTTACTGTAACTATCTTCATATTCTGTATTTTCGTTTACTGTAAATTACTGTGAATTTTGGCTAAAATAGGGGTTACTGTGGCTAGATGAAGGATTACTGTAACATTCTTCCTTTTTTTCTGGCTTTCGAAAAACTAGTCGGATTAATGTGGCTGGCAAAAAAAATTACTGTAGTTTGAACTCTAAAATGTTGGATTACGGTCGCTAGAATGAGGATTACTGTAGCCGAAATATCGGTAAACTCGAAAATGTTGAATTACGGTAGCTGAAAAAATTATATGACTCAAAAAGAGTCAGATTACAGTAGCTGAAATGTGGGTTACTGTAGCTAGAATAAGGATTACTGTAACTTACTTGAAAAAATGACCAAAAATAGTCCAGAATGGGTCAGATTACTGTAGCTGGGAAAATGATTACGGTAGGGTACAGTTGACAGCTAAAACATGGATTACTGTAGCTAGAGTAAGGATTACGGTAGCTAAA</canonical_amplicon>
		<polymorphic_amplicon>GATTGTTGGTGAGTGGTTTTAGGGGGTGGGCGGGGCTTAAAATTGCCAGAAATAGGCTCAAAAATGACCGAAAAACTGGAAAAAAAGGATTACACTGTAGCTGAAAATCTGAAAATTTCGAGTTAAACTGAGCCAAAATCGTCTCAAAAATGACCCTAAAATGACCCAAAACGAGTCGGATTACTGTAGCTAGAATAAGGGTTACTGTAACTATCTTCATATTCTGTATTTTCGTTTACTGTAAATTACTGTGAATTTTGGCTAAAATAGGGGTTACTGTGGCTAGATGAAGGATTACTGTAACATTCTTCCTTTTTTTYTGGCTTTCGAAAAACTAGTCGGATTAATGTGGCTGGCAAAAAAAATTACTGTAGTTTGAACTCTAAAATGTTGGATTACGGTCGCTAGAATGAGGATTACTGTAGCCGAAATATCGGTAAACTCGAAAATGTTGAATTACGGTAGCTGAAAAAATTATATGACTCAAAAAGAGTCAGATTACAGTAGCTGAAATGTGGGTTACTGTAGCTAGAATAAGGATTACTGTAACTTACTTGAAAAAATGACCAAAAATAGTCCAGAATGGGTCAGATTACTGTAGCTGGGAAAATGATTACGGTAGGGTACAGTTGACAGCTAAAACATGGATTACTGTAGCTAGAGTAAGGATTACGGTAGCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15067</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>370728</contig_pos>
        <strand>+</strand>
        <context>GGGTTACTGT[A/G]GCTAGATGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGTTTACTGTAAATTACTGTGAATTTTGGCTAAAATAGGGGTTACTGT</left_flank>
        <right_flank>GCTAGATGAAGGATTACTGTAACATTCTTCCTTTTTTTCTGGCTTTCGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTCGGGACCTCTGGAGACGCATCTCTCGGCCACTGAGAGATATTTGAAGGATGAGGAATCGGTAGGAGACGACACGTGGCTTGCAAAGACTCATGGAGTCATGAAGAGCAAGTGGAACAAGGTGAAAGAGCTACTGGTGGATCGGGAGAAGAAGCTACAGTTGGCCTATGAGCAAGCGGTTGCGTTGGAGCAAGCGTTGAATGATATGGAGGCGTGGATTGTTGGTGAGTGGTTTTAGGGGGTGGGCGGGGCTTAAAATTGCCAGAAATAGGCTCAAAAATGACCGAAAAACTGGAAAAAAAGGATTACACTGTAGCTGAAAATCTGAAAATTTCGAGTTAAACTGAGCCAAAATCGTCTCAAAAATGACCCTAAAATGACCCAAAACGAGTCGGATTACTGTAGCTAGAATAAGGGTTACTGTAACTATCTTCATATTCTGTATTTTCGTTTACTGTAAATTACTGTGAATTTTGGCTAAAATAGGGGTTACTGTGGCTAGATGAAGGATTACTGTAACATTCTTCCTTTTTTTCTGGCTTTCGAAAAACTAGTCGGATTAATGTGGCTGGCAAAAAAAATTACTGTAGTTTGAACTCTAAAATGTTGGATTACGGTCGCTAGAATGAGGATTACTGTAGCCGAAATATCGGTAAACTCGAAAATGTTGAATTACGGTAGCTGAAAAAATTATATGACTCAAAAAGAGTCAGATTACAGTAGCTGAAATGTGGGTTACTGTAGCTAGAATAAGGATTACTGTAACTTACTTGAAAAAATGACCAAAAATAGTCCAGAATGGGTCAGATTACTGTAGCTGGGAAAATGATTACGGTAGGGTACAGTTGACAGCTAAAACATGGATTACTGTAGCTAGAGTAAGGATTACGGTAGCTAAAACGGGATAAATCAGCTAAAACTTAGTTTACTGTACCTAGAACAGGAATTAGAGACCTGGACTACTGTAGTTCTCTCATTGCTCATCTTACATGTTAAT</canonical>
            <polymorphic>GAATTCGGGACCTCTGGAGACGCATCTCTCGGCCACTGAGAGATATTTGAAGGATGAGGAATCGGTAGGAGACGACACGTGGCTTGCAAAGACTCATGGAGTCATGAAGAGCAAGTGGAACAAGGTGAAAGAGCTACTGGTGGATCGGGAGAAGAAGCTACAGTTGGCCTATGAGCAAGCGGTTGCGTTGGAGCAAGCGTTGAATGATATGGAGGCGTGGATTGTTGGTGAGTGGTTTTAGGGGGTGGGCGGGGCTTAAAATTGCCAGAAATAGGCTCAAAAATGACCGAAAAACTGGAAAAAAAGGATTACACTGTAGCTGAAAATCTGAAAATTTCGAGTTAAACTGAGCCAAAATCGTCTCAAAAATGACCCTAAAATGACCCAAAACGAGTCGGATTACTGTAGCTAGAATAAGGGTTACTGTAACTATCTTCATATTCTGTATTTTCGTTTACTGTAAATTACTGTGAATTTTGGCTAAAATAGGGGTTACTGTRGCTAGATGAAGGATTACTGTAACATTCTTCCTTTTTTTCTGGCTTTCGAAAAACTAGTCGGATTAATGTGGCTGGCAAAAAAAATTACTGTAGTTTGAACTCTAAAATGTTGGATTACGGTCGCTAGAATGAGGATTACTGTAGCCGAAATATCGGTAAACTCGAAAATGTTGAATTACGGTAGCTGAAAAAATTATATGACTCAAAAAGAGTCAGATTACAGTAGCTGAAATGTGGGTTACTGTAGCTAGAATAAGGATTACTGTAACTTACTTGAAAAAATGACCAAAAATAGTCCAGAATGGGTCAGATTACTGTAGCTGGGAAAATGATTACGGTAGGGTACAGTTGACAGCTAAAACATGGATTACTGTAGCTAGAGTAAGGATTACGGTAGCTAAAACGGGATAAATCAGCTAAAACTTAGTTTACTGTACCTAGAACAGGAATTAGAGACCTGGACTACTGTAGTTCTCTCATTGCTCATCTTACATGTTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>87 84 73 73 72 57 51 50 44 42 41 40 35 32 32 29 24 21 21 21 21 21 19 10</canonical_bands>
                <polymorphic_bands>87 84 73 73 72 62 57 51 50 44 42 40 35 32 32 29 24 21 21 21 21 19 10</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>264 166 159 77 70 66 42 36 35 28 15 13 11 10 4 4</canonical_bands>
                <polymorphic_bands>264 166 159 98 77 66 42 36 35 15 13 11 10 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTGTTGGTGAGTGGTTTTAG</pcr_primer_p1>
		<pcr_primer_p2>TTTAGCTACCGTAATCCTTACTCT</pcr_primer_p2>
		<pcr_amplicon_size>683</pcr_amplicon_size>
		<canonical_amplicon>GATTGTTGGTGAGTGGTTTTAGGGGGTGGGCGGGGCTTAAAATTGCCAGAAATAGGCTCAAAAATGACCGAAAAACTGGAAAAAAAGGATTACACTGTAGCTGAAAATCTGAAAATTTCGAGTTAAACTGAGCCAAAATCGTCTCAAAAATGACCCTAAAATGACCCAAAACGAGTCGGATTACTGTAGCTAGAATAAGGGTTACTGTAACTATCTTCATATTCTGTATTTTCGTTTACTGTAAATTACTGTGAATTTTGGCTAAAATAGGGGTTACTGTGGCTAGATGAAGGATTACTGTAACATTCTTCCTTTTTTTCTGGCTTTCGAAAAACTAGTCGGATTAATGTGGCTGGCAAAAAAAATTACTGTAGTTTGAACTCTAAAATGTTGGATTACGGTCGCTAGAATGAGGATTACTGTAGCCGAAATATCGGTAAACTCGAAAATGTTGAATTACGGTAGCTGAAAAAATTATATGACTCAAAAAGAGTCAGATTACAGTAGCTGAAATGTGGGTTACTGTAGCTAGAATAAGGATTACTGTAACTTACTTGAAAAAATGACCAAAAATAGTCCAGAATGGGTCAGATTACTGTAGCTGGGAAAATGATTACGGTAGGGTACAGTTGACAGCTAAAACATGGATTACTGTAGCTAGAGTAAGGATTACGGTAGCTAAA</canonical_amplicon>
		<polymorphic_amplicon>GATTGTTGGTGAGTGGTTTTAGGGGGTGGGCGGGGCTTAAAATTGCCAGAAATAGGCTCAAAAATGACCGAAAAACTGGAAAAAAAGGATTACACTGTAGCTGAAAATCTGAAAATTTCGAGTTAAACTGAGCCAAAATCGTCTCAAAAATGACCCTAAAATGACCCAAAACGAGTCGGATTACTGTAGCTAGAATAAGGGTTACTGTAACTATCTTCATATTCTGTATTTTCGTTTACTGTAAATTACTGTGAATTTTGGCTAAAATAGGGGTTACTGTRGCTAGATGAAGGATTACTGTAACATTCTTCCTTTTTTTCTGGCTTTCGAAAAACTAGTCGGATTAATGTGGCTGGCAAAAAAAATTACTGTAGTTTGAACTCTAAAATGTTGGATTACGGTCGCTAGAATGAGGATTACTGTAGCCGAAATATCGGTAAACTCGAAAATGTTGAATTACGGTAGCTGAAAAAATTATATGACTCAAAAAGAGTCAGATTACAGTAGCTGAAATGTGGGTTACTGTAGCTAGAATAAGGATTACTGTAACTTACTTGAAAAAATGACCAAAAATAGTCCAGAATGGGTCAGATTACTGTAGCTGGGAAAATGATTACGGTAGGGTACAGTTGACAGCTAAAACATGGATTACTGTAGCTAGAGTAAGGATTACGGTAGCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15068</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>370717</contig_pos>
        <strand>+</strand>
        <context>GGCTAAAWTA[A/G]GGGTTACTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTCTGTATTTTCGTTTACTGTAAATTACTGTGAATTTTGGCTAAAATA</left_flank>
        <right_flank>GGGTTACTGTGGCTAGATGAAGGATTACTGTAACATTCTTCCTTTTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGTCGAGATGAATTCGGGACCTCTGGAGACGCATCTCTCGGCCACTGAGAGATATTTGAAGGATGAGGAATCGGTAGGAGACGACACGTGGCTTGCAAAGACTCATGGAGTCATGAAGAGCAAGTGGAACAAGGTGAAAGAGCTACTGGTGGATCGGGAGAAGAAGCTACAGTTGGCCTATGAGCAAGCGGTTGCGTTGGAGCAAGCGTTGAATGATATGGAGGCGTGGATTGTTGGTGAGTGGTTTTAGGGGGTGGGCGGGGCTTAAAATTGCCAGAAATAGGCTCAAAAATGACCGAAAAACTGGAAAAAAAGGATTACACTGTAGCTGAAAATCTGAAAATTTCGAGTTAAACTGAGCCAAAATCGTCTCAAAAATGACCCTAAAATGACCCAAAACGAGTCGGATTACTGTAGCTAGAATAAGGGTTACTGTAACTATCTTCATATTCTGTATTTTCGTTTACTGTAAATTACTGTGAATTTTGGCTAAAATAGGGGTTACTGTGGCTAGATGAAGGATTACTGTAACATTCTTCCTTTTTTTCTGGCTTTCGAAAAACTAGTCGGATTAATGTGGCTGGCAAAAAAAATTACTGTAGTTTGAACTCTAAAATGTTGGATTACGGTCGCTAGAATGAGGATTACTGTAGCCGAAATATCGGTAAACTCGAAAATGTTGAATTACGGTAGCTGAAAAAATTATATGACTCAAAAAGAGTCAGATTACAGTAGCTGAAATGTGGGTTACTGTAGCTAGAATAAGGATTACTGTAACTTACTTGAAAAAATGACCAAAAATAGTCCAGAATGGGTCAGATTACTGTAGCTGGGAAAATGATTACGGTAGGGTACAGTTGACAGCTAAAACATGGATTACTGTAGCTAGAGTAAGGATTACGGTAGCTAAAACGGGATAAATCAGCTAAAACTTAGTTTACTGTACCTAGAACAGGAATTAGAGACCTGGACTACTGTAGTTCTCTCATTGCTCATCT</canonical>
            <polymorphic>GATGTCGAGATGAATTCGGGACCTCTGGAGACGCATCTCTCGGCCACTGAGAGATATTTGAAGGATGAGGAATCGGTAGGAGACGACACGTGGCTTGCAAAGACTCATGGAGTCATGAAGAGCAAGTGGAACAAGGTGAAAGAGCTACTGGTGGATCGGGAGAAGAAGCTACAGTTGGCCTATGAGCAAGCGGTTGCGTTGGAGCAAGCGTTGAATGATATGGAGGCGTGGATTGTTGGTGAGTGGTTTTAGGGGGTGGGCGGGGCTTAAAATTGCCAGAAATAGGCTCAAAAATGACCGAAAAACTGGAAAAAAAGGATTACACTGTAGCTGAAAATCTGAAAATTTCGAGTTAAACTGAGCCAAAATCGTCTCAAAAATGACCCTAAAATGACCCAAAACGAGTCGGATTACTGTAGCTAGAATAAGGGTTACTGTAACTATCTTCATATTCTGTATTTTCGTTTACTGTAAATTACTGTGAATTTTGGCTAAAATARGGGTTACTGTGGCTAGATGAAGGATTACTGTAACATTCTTCCTTTTTTTCTGGCTTTCGAAAAACTAGTCGGATTAATGTGGCTGGCAAAAAAAATTACTGTAGTTTGAACTCTAAAATGTTGGATTACGGTCGCTAGAATGAGGATTACTGTAGCCGAAATATCGGTAAACTCGAAAATGTTGAATTACGGTAGCTGAAAAAATTATATGACTCAAAAAGAGTCAGATTACAGTAGCTGAAATGTGGGTTACTGTAGCTAGAATAAGGATTACTGTAACTTACTTGAAAAAATGACCAAAAATAGTCCAGAATGGGTCAGATTACTGTAGCTGGGAAAATGATTACGGTAGGGTACAGTTGACAGCTAAAACATGGATTACTGTAGCTAGAGTAAGGATTACGGTAGCTAAAACGGGATAAATCAGCTAAAACTTAGTTTACTGTACCTAGAACAGGAATTAGAGACCTGGACTACTGTAGTTCTCTCATTGCTCATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTGTTGGTGAGTGGTTTTAG</pcr_primer_p1>
		<pcr_primer_p2>TTTAGCTACCGTAATCCTTACTCT</pcr_primer_p2>
		<pcr_amplicon_size>683</pcr_amplicon_size>
		<canonical_amplicon>GATTGTTGGTGAGTGGTTTTAGGGGGTGGGCGGGGCTTAAAATTGCCAGAAATAGGCTCAAAAATGACCGAAAAACTGGAAAAAAAGGATTACACTGTAGCTGAAAATCTGAAAATTTCGAGTTAAACTGAGCCAAAATCGTCTCAAAAATGACCCTAAAATGACCCAAAACGAGTCGGATTACTGTAGCTAGAATAAGGGTTACTGTAACTATCTTCATATTCTGTATTTTCGTTTACTGTAAATTACTGTGAATTTTGGCTAAAATAGGGGTTACTGTGGCTAGATGAAGGATTACTGTAACATTCTTCCTTTTTTTCTGGCTTTCGAAAAACTAGTCGGATTAATGTGGCTGGCAAAAAAAATTACTGTAGTTTGAACTCTAAAATGTTGGATTACGGTCGCTAGAATGAGGATTACTGTAGCCGAAATATCGGTAAACTCGAAAATGTTGAATTACGGTAGCTGAAAAAATTATATGACTCAAAAAGAGTCAGATTACAGTAGCTGAAATGTGGGTTACTGTAGCTAGAATAAGGATTACTGTAACTTACTTGAAAAAATGACCAAAAATAGTCCAGAATGGGTCAGATTACTGTAGCTGGGAAAATGATTACGGTAGGGTACAGTTGACAGCTAAAACATGGATTACTGTAGCTAGAGTAAGGATTACGGTAGCTAAA</canonical_amplicon>
		<polymorphic_amplicon>GATTGTTGGTGAGTGGTTTTAGGGGGTGGGCGGGGCTTAAAATTGCCAGAAATAGGCTCAAAAATGACCGAAAAACTGGAAAAAAAGGATTACACTGTAGCTGAAAATCTGAAAATTTCGAGTTAAACTGAGCCAAAATCGTCTCAAAAATGACCCTAAAATGACCCAAAACGAGTCGGATTACTGTAGCTAGAATAAGGGTTACTGTAACTATCTTCATATTCTGTATTTTCGTTTACTGTAAATTACTGTGAATTTTGGCTAAAATARGGGTTACTGTGGCTAGATGAAGGATTACTGTAACATTCTTCCTTTTTTTCTGGCTTTCGAAAAACTAGTCGGATTAATGTGGCTGGCAAAAAAAATTACTGTAGTTTGAACTCTAAAATGTTGGATTACGGTCGCTAGAATGAGGATTACTGTAGCCGAAATATCGGTAAACTCGAAAATGTTGAATTACGGTAGCTGAAAAAATTATATGACTCAAAAAGAGTCAGATTACAGTAGCTGAAATGTGGGTTACTGTAGCTAGAATAAGGATTACTGTAACTTACTTGAAAAAATGACCAAAAATAGTCCAGAATGGGTCAGATTACTGTAGCTGGGAAAATGATTACGGTAGGGTACAGTTGACAGCTAAAACATGGATTACTGTAGCTAGAGTAAGGATTACGGTAGCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15069</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>370714</contig_pos>
        <strand>+</strand>
        <context>TTTGGCTAAA[A/T]TARGGGTTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCATATTCTGTATTTTCGTTTACTGTAAATTACTGTGAATTTTGGCTAAA</left_flank>
        <right_flank>TAGGGGTTACTGTGGCTAGATGAAGGATTACTGTAACATTCTTCCTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGATGTCGAGATGAATTCGGGACCTCTGGAGACGCATCTCTCGGCCACTGAGAGATATTTGAAGGATGAGGAATCGGTAGGAGACGACACGTGGCTTGCAAAGACTCATGGAGTCATGAAGAGCAAGTGGAACAAGGTGAAAGAGCTACTGGTGGATCGGGAGAAGAAGCTACAGTTGGCCTATGAGCAAGCGGTTGCGTTGGAGCAAGCGTTGAATGATATGGAGGCGTGGATTGTTGGTGAGTGGTTTTAGGGGGTGGGCGGGGCTTAAAATTGCCAGAAATAGGCTCAAAAATGACCGAAAAACTGGAAAAAAAGGATTACACTGTAGCTGAAAATCTGAAAATTTCGAGTTAAACTGAGCCAAAATCGTCTCAAAAATGACCCTAAAATGACCCAAAACGAGTCGGATTACTGTAGCTAGAATAAGGGTTACTGTAACTATCTTCATATTCTGTATTTTCGTTTACTGTAAATTACTGTGAATTTTGGCTAAAATAGGGGTTACTGTGGCTAGATGAAGGATTACTGTAACATTCTTCCTTTTTTTCTGGCTTTCGAAAAACTAGTCGGATTAATGTGGCTGGCAAAAAAAATTACTGTAGTTTGAACTCTAAAATGTTGGATTACGGTCGCTAGAATGAGGATTACTGTAGCCGAAATATCGGTAAACTCGAAAATGTTGAATTACGGTAGCTGAAAAAATTATATGACTCAAAAAGAGTCAGATTACAGTAGCTGAAATGTGGGTTACTGTAGCTAGAATAAGGATTACTGTAACTTACTTGAAAAAATGACCAAAAATAGTCCAGAATGGGTCAGATTACTGTAGCTGGGAAAATGATTACGGTAGGGTACAGTTGACAGCTAAAACATGGATTACTGTAGCTAGAGTAAGGATTACGGTAGCTAAAACGGGATAAATCAGCTAAAACTTAGTTTACTGTACCTAGAACAGGAATTAGAGACCTGGACTACTGTAGTTCTCTCATTGCTCA</canonical>
            <polymorphic>TCGGATGTCGAGATGAATTCGGGACCTCTGGAGACGCATCTCTCGGCCACTGAGAGATATTTGAAGGATGAGGAATCGGTAGGAGACGACACGTGGCTTGCAAAGACTCATGGAGTCATGAAGAGCAAGTGGAACAAGGTGAAAGAGCTACTGGTGGATCGGGAGAAGAAGCTACAGTTGGCCTATGAGCAAGCGGTTGCGTTGGAGCAAGCGTTGAATGATATGGAGGCGTGGATTGTTGGTGAGTGGTTTTAGGGGGTGGGCGGGGCTTAAAATTGCCAGAAATAGGCTCAAAAATGACCGAAAAACTGGAAAAAAAGGATTACACTGTAGCTGAAAATCTGAAAATTTCGAGTTAAACTGAGCCAAAATCGTCTCAAAAATGACCCTAAAATGACCCAAAACGAGTCGGATTACTGTAGCTAGAATAAGGGTTACTGTAACTATCTTCATATTCTGTATTTTCGTTTACTGTAAATTACTGTGAATTTTGGCTAAAWTAGGGGTTACTGTGGCTAGATGAAGGATTACTGTAACATTCTTCCTTTTTTTCTGGCTTTCGAAAAACTAGTCGGATTAATGTGGCTGGCAAAAAAAATTACTGTAGTTTGAACTCTAAAATGTTGGATTACGGTCGCTAGAATGAGGATTACTGTAGCCGAAATATCGGTAAACTCGAAAATGTTGAATTACGGTAGCTGAAAAAATTATATGACTCAAAAAGAGTCAGATTACAGTAGCTGAAATGTGGGTTACTGTAGCTAGAATAAGGATTACTGTAACTTACTTGAAAAAATGACCAAAAATAGTCCAGAATGGGTCAGATTACTGTAGCTGGGAAAATGATTACGGTAGGGTACAGTTGACAGCTAAAACATGGATTACTGTAGCTAGAGTAAGGATTACGGTAGCTAAAACGGGATAAATCAGCTAAAACTTAGTTTACTGTACCTAGAACAGGAATTAGAGACCTGGACTACTGTAGTTCTCTCATTGCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTGTTGGTGAGTGGTTTTAG</pcr_primer_p1>
		<pcr_primer_p2>TTTAGCTACCGTAATCCTTACTCT</pcr_primer_p2>
		<pcr_amplicon_size>683</pcr_amplicon_size>
		<canonical_amplicon>GATTGTTGGTGAGTGGTTTTAGGGGGTGGGCGGGGCTTAAAATTGCCAGAAATAGGCTCAAAAATGACCGAAAAACTGGAAAAAAAGGATTACACTGTAGCTGAAAATCTGAAAATTTCGAGTTAAACTGAGCCAAAATCGTCTCAAAAATGACCCTAAAATGACCCAAAACGAGTCGGATTACTGTAGCTAGAATAAGGGTTACTGTAACTATCTTCATATTCTGTATTTTCGTTTACTGTAAATTACTGTGAATTTTGGCTAAAATAGGGGTTACTGTGGCTAGATGAAGGATTACTGTAACATTCTTCCTTTTTTTCTGGCTTTCGAAAAACTAGTCGGATTAATGTGGCTGGCAAAAAAAATTACTGTAGTTTGAACTCTAAAATGTTGGATTACGGTCGCTAGAATGAGGATTACTGTAGCCGAAATATCGGTAAACTCGAAAATGTTGAATTACGGTAGCTGAAAAAATTATATGACTCAAAAAGAGTCAGATTACAGTAGCTGAAATGTGGGTTACTGTAGCTAGAATAAGGATTACTGTAACTTACTTGAAAAAATGACCAAAAATAGTCCAGAATGGGTCAGATTACTGTAGCTGGGAAAATGATTACGGTAGGGTACAGTTGACAGCTAAAACATGGATTACTGTAGCTAGAGTAAGGATTACGGTAGCTAAA</canonical_amplicon>
		<polymorphic_amplicon>GATTGTTGGTGAGTGGTTTTAGGGGGTGGGCGGGGCTTAAAATTGCCAGAAATAGGCTCAAAAATGACCGAAAAACTGGAAAAAAAGGATTACACTGTAGCTGAAAATCTGAAAATTTCGAGTTAAACTGAGCCAAAATCGTCTCAAAAATGACCCTAAAATGACCCAAAACGAGTCGGATTACTGTAGCTAGAATAAGGGTTACTGTAACTATCTTCATATTCTGTATTTTCGTTTACTGTAAATTACTGTGAATTTTGGCTAAAWTAGGGGTTACTGTGGCTAGATGAAGGATTACTGTAACATTCTTCCTTTTTTTCTGGCTTTCGAAAAACTAGTCGGATTAATGTGGCTGGCAAAAAAAATTACTGTAGTTTGAACTCTAAAATGTTGGATTACGGTCGCTAGAATGAGGATTACTGTAGCCGAAATATCGGTAAACTCGAAAATGTTGAATTACGGTAGCTGAAAAAATTATATGACTCAAAAAGAGTCAGATTACAGTAGCTGAAATGTGGGTTACTGTAGCTAGAATAAGGATTACTGTAACTTACTTGAAAAAATGACCAAAAATAGTCCAGAATGGGTCAGATTACTGTAGCTGGGAAAATGATTACGGTAGGGTACAGTTGACAGCTAAAACATGGATTACTGTAGCTAGAGTAAGGATTACGGTAGCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15070</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>370682</contig_pos>
        <strand>+</strand>
        <context>TGTATTTTCG[G/T]TTACTGTAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTAGCTAGAATAAGGGTTACTGTAACTATCTTCATATTCTGTATTTTCG</left_flank>
        <right_flank>TTACTGTAAATTACTGTGAATTTTGGCTAAAATAGGGGTTACTGTGGCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTCCAGTTGGACGAGTTCAAGGTGCTCAAATCGGATGTCGAGATGAATTCGGGACCTCTGGAGACGCATCTCTCGGCCACTGAGAGATATTTGAAGGATGAGGAATCGGTAGGAGACGACACGTGGCTTGCAAAGACTCATGGAGTCATGAAGAGCAAGTGGAACAAGGTGAAAGAGCTACTGGTGGATCGGGAGAAGAAGCTACAGTTGGCCTATGAGCAAGCGGTTGCGTTGGAGCAAGCGTTGAATGATATGGAGGCGTGGATTGTTGGTGAGTGGTTTTAGGGGGTGGGCGGGGCTTAAAATTGCCAGAAATAGGCTCAAAAATGACCGAAAAACTGGAAAAAAAGGATTACACTGTAGCTGAAAATCTGAAAATTTCGAGTTAAACTGAGCCAAAATCGTCTCAAAAATGACCCTAAAATGACCCAAAACGAGTCGGATTACTGTAGCTAGAATAAGGGTTACTGTAACTATCTTCATATTCTGTATTTTCGTTTACTGTAAATTACTGTGAATTTTGGCTAAAATAGGGGTTACTGTGGCTAGATGAAGGATTACTGTAACATTCTTCCTTTTTTTCTGGCTTTCGAAAAACTAGTCGGATTAATGTGGCTGGCAAAAAAAATTACTGTAGTTTGAACTCTAAAATGTTGGATTACGGTCGCTAGAATGAGGATTACTGTAGCCGAAATATCGGTAAACTCGAAAATGTTGAATTACGGTAGCTGAAAAAATTATATGACTCAAAAAGAGTCAGATTACAGTAGCTGAAATGTGGGTTACTGTAGCTAGAATAAGGATTACTGTAACTTACTTGAAAAAATGACCAAAAATAGTCCAGAATGGGTCAGATTACTGTAGCTGGGAAAATGATTACGGTAGGGTACAGTTGACAGCTAAAACATGGATTACTGTAGCTAGAGTAAGGATTACGGTAGCTAAAACGGGATAAATCAGCTAAAACTTAGTTTACTGTACCTAGAACAGGAATTAGA</canonical>
            <polymorphic>AATTCCAGTTGGACGAGTTCAAGGTGCTCAAATCGGATGTCGAGATGAATTCGGGACCTCTGGAGACGCATCTCTCGGCCACTGAGAGATATTTGAAGGATGAGGAATCGGTAGGAGACGACACGTGGCTTGCAAAGACTCATGGAGTCATGAAGAGCAAGTGGAACAAGGTGAAAGAGCTACTGGTGGATCGGGAGAAGAAGCTACAGTTGGCCTATGAGCAAGCGGTTGCGTTGGAGCAAGCGTTGAATGATATGGAGGCGTGGATTGTTGGTGAGTGGTTTTAGGGGGTGGGCGGGGCTTAAAATTGCCAGAAATAGGCTCAAAAATGACCGAAAAACTGGAAAAAAAGGATTACACTGTAGCTGAAAATCTGAAAATTTCGAGTTAAACTGAGCCAAAATCGTCTCAAAAATGACCCTAAAATGACCCAAAACGAGTCGGATTACTGTAGCTAGAATAAGGGTTACTGTAACTATCTTCATATTCTGTATTTTCGKTTACTGTAAATTACTGTGAATTTTGGCTAAAATAGGGGTTACTGTGGCTAGATGAAGGATTACTGTAACATTCTTCCTTTTTTTCTGGCTTTCGAAAAACTAGTCGGATTAATGTGGCTGGCAAAAAAAATTACTGTAGTTTGAACTCTAAAATGTTGGATTACGGTCGCTAGAATGAGGATTACTGTAGCCGAAATATCGGTAAACTCGAAAATGTTGAATTACGGTAGCTGAAAAAATTATATGACTCAAAAAGAGTCAGATTACAGTAGCTGAAATGTGGGTTACTGTAGCTAGAATAAGGATTACTGTAACTTACTTGAAAAAATGACCAAAAATAGTCCAGAATGGGTCAGATTACTGTAGCTGGGAAAATGATTACGGTAGGGTACAGTTGACAGCTAAAACATGGATTACTGTAGCTAGAGTAAGGATTACGGTAGCTAAAACGGGATAAATCAGCTAAAACTTAGTTTACTGTACCTAGAACAGGAATTAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 203 192 79 25</canonical_bands>
                <polymorphic_bands>704 192 79 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTGTTGGTGAGTGGTTTTAG</pcr_primer_p1>
		<pcr_primer_p2>TGTTACAGTAATCCTTCATCTAGC</pcr_primer_p2>
		<pcr_amplicon_size>305</pcr_amplicon_size>
		<canonical_amplicon>GATTGTTGGTGAGTGGTTTTAGGGGGTGGGCGGGGCTTAAAATTGCCAGAAATAGGCTCAAAAATGACCGAAAAACTGGAAAAAAAGGATTACACTGTAGCTGAAAATCTGAAAATTTCGAGTTAAACTGAGCCAAAATCGTCTCAAAAATGACCCTAAAATGACCCAAAACGAGTCGGATTACTGTAGCTAGAATAAGGGTTACTGTAACTATCTTCATATTCTGTATTTTCGTTTACTGTAAATTACTGTGAATTTTGGCTAAAATAGGGGTTACTGTGGCTAGATGAAGGATTACTGTAACA</canonical_amplicon>
		<polymorphic_amplicon>GATTGTTGGTGAGTGGTTTTAGGGGGTGGGCGGGGCTTAAAATTGCCAGAAATAGGCTCAAAAATGACCGAAAAACTGGAAAAAAAGGATTACACTGTAGCTGAAAATCTGAAAATTTCGAGTTAAACTGAGCCAAAATCGTCTCAAAAATGACCCTAAAATGACCCAAAACGAGTCGGATTACTGTAGCTAGAATAAGGGTTACTGTAACTATCTTCATATTCTGTATTTTCGKTTACTGTAAATTACTGTGAATTTTGGCTAAAATAGGGGTTACTGTGGCTAGATGAAGGATTACTGTAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15071</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>370660</contig_pos>
        <strand>+</strand>
        <context>TACTGTAACT[A/C]TCTTCATATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GACCCAAAACGAGTCGGATTACTGTAGCTAGAATAAGGGTTACTGTAACT</left_flank>
        <right_flank>TCTTCATATTCTGTATTTTCGTTTACTGTAAATTACTGTGAATTTTGGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGGACTTCCTGAAACTGCGGAATTCCAGTTGGACGAGTTCAAGGTGCTCAAATCGGATGTCGAGATGAATTCGGGACCTCTGGAGACGCATCTCTCGGCCACTGAGAGATATTTGAAGGATGAGGAATCGGTAGGAGACGACACGTGGCTTGCAAAGACTCATGGAGTCATGAAGAGCAAGTGGAACAAGGTGAAAGAGCTACTGGTGGATCGGGAGAAGAAGCTACAGTTGGCCTATGAGCAAGCGGTTGCGTTGGAGCAAGCGTTGAATGATATGGAGGCGTGGATTGTTGGTGAGTGGTTTTAGGGGGTGGGCGGGGCTTAAAATTGCCAGAAATAGGCTCAAAAATGACCGAAAAACTGGAAAAAAAGGATTACACTGTAGCTGAAAATCTGAAAATTTCGAGTTAAACTGAGCCAAAATCGTCTCAAAAATGACCCTAAAATGACCCAAAACGAGTCGGATTACTGTAGCTAGAATAAGGGTTACTGTAACTATCTTCATATTCTGTATTTTCGTTTACTGTAAATTACTGTGAATTTTGGCTAAAATAGGGGTTACTGTGGCTAGATGAAGGATTACTGTAACATTCTTCCTTTTTTTCTGGCTTTCGAAAAACTAGTCGGATTAATGTGGCTGGCAAAAAAAATTACTGTAGTTTGAACTCTAAAATGTTGGATTACGGTCGCTAGAATGAGGATTACTGTAGCCGAAATATCGGTAAACTCGAAAATGTTGAATTACGGTAGCTGAAAAAATTATATGACTCAAAAAGAGTCAGATTACAGTAGCTGAAATGTGGGTTACTGTAGCTAGAATAAGGATTACTGTAACTTACTTGAAAAAATGACCAAAAATAGTCCAGAATGGGTCAGATTACTGTAGCTGGGAAAATGATTACGGTAGGGTACAGTTGACAGCTAAAACATGGATTACTGTAGCTAGAGTAAGGATTACGGTAGCTAAAACGGGATAAATCAGCTAAAACTTAGTTTAC</canonical>
            <polymorphic>GGAGGACTTCCTGAAACTGCGGAATTCCAGTTGGACGAGTTCAAGGTGCTCAAATCGGATGTCGAGATGAATTCGGGACCTCTGGAGACGCATCTCTCGGCCACTGAGAGATATTTGAAGGATGAGGAATCGGTAGGAGACGACACGTGGCTTGCAAAGACTCATGGAGTCATGAAGAGCAAGTGGAACAAGGTGAAAGAGCTACTGGTGGATCGGGAGAAGAAGCTACAGTTGGCCTATGAGCAAGCGGTTGCGTTGGAGCAAGCGTTGAATGATATGGAGGCGTGGATTGTTGGTGAGTGGTTTTAGGGGGTGGGCGGGGCTTAAAATTGCCAGAAATAGGCTCAAAAATGACCGAAAAACTGGAAAAAAAGGATTACACTGTAGCTGAAAATCTGAAAATTTCGAGTTAAACTGAGCCAAAATCGTCTCAAAAATGACCCTAAAATGACCCAAAACGAGTCGGATTACTGTAGCTAGAATAAGGGTTACTGTAACTMTCTTCATATTCTGTATTTTCGTTTACTGTAAATTACTGTGAATTTTGGCTAAAATAGGGGTTACTGTGGCTAGATGAAGGATTACTGTAACATTCTTCCTTTTTTTCTGGCTTTCGAAAAACTAGTCGGATTAATGTGGCTGGCAAAAAAAATTACTGTAGTTTGAACTCTAAAATGTTGGATTACGGTCGCTAGAATGAGGATTACTGTAGCCGAAATATCGGTAAACTCGAAAATGTTGAATTACGGTAGCTGAAAAAATTATATGACTCAAAAAGAGTCAGATTACAGTAGCTGAAATGTGGGTTACTGTAGCTAGAATAAGGATTACTGTAACTTACTTGAAAAAATGACCAAAAATAGTCCAGAATGGGTCAGATTACTGTAGCTGGGAAAATGATTACGGTAGGGTACAGTTGACAGCTAAAACATGGATTACTGTAGCTAGAGTAAGGATTACGGTAGCTAAAACGGGATAAATCAGCTAAAACTTAGTTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTGTTGGTGAGTGGTTTTAG</pcr_primer_p1>
		<pcr_primer_p2>TGTTACAGTAATCCTTCATCTAGC</pcr_primer_p2>
		<pcr_amplicon_size>305</pcr_amplicon_size>
		<canonical_amplicon>GATTGTTGGTGAGTGGTTTTAGGGGGTGGGCGGGGCTTAAAATTGCCAGAAATAGGCTCAAAAATGACCGAAAAACTGGAAAAAAAGGATTACACTGTAGCTGAAAATCTGAAAATTTCGAGTTAAACTGAGCCAAAATCGTCTCAAAAATGACCCTAAAATGACCCAAAACGAGTCGGATTACTGTAGCTAGAATAAGGGTTACTGTAACTATCTTCATATTCTGTATTTTCGTTTACTGTAAATTACTGTGAATTTTGGCTAAAATAGGGGTTACTGTGGCTAGATGAAGGATTACTGTAACA</canonical_amplicon>
		<polymorphic_amplicon>GATTGTTGGTGAGTGGTTTTAGGGGGTGGGCGGGGCTTAAAATTGCCAGAAATAGGCTCAAAAATGACCGAAAAACTGGAAAAAAAGGATTACACTGTAGCTGAAAATCTGAAAATTTCGAGTTAAACTGAGCCAAAATCGTCTCAAAAATGACCCTAAAATGACCCAAAACGAGTCGGATTACTGTAGCTAGAATAAGGGTTACTGTAACTMTCTTCATATTCTGTATTTTCGTTTACTGTAAATTACTGTGAATTTTGGCTAAAATAGGGGTTACTGTGGCTAGATGAAGGATTACTGTAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15072</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>370636</contig_pos>
        <strand>+</strand>
        <context>GATTACTGTA[C/G]CTAGAATAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCGTCTCAAAAATGACCCTAAAATGACCCAAAACGAGTCGGATTACTGTA</left_flank>
        <right_flank>CTAGAATAAGGGTTACTGTAACTATCTTCATATTCTGTATTTTCGTTTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCACTGCAATCGACGAAACCAACTGGAGGACTTCCTGAAACTGCGGAATTCCAGTTGGACGAGTTCAAGGTGCTCAAATCGGATGTCGAGATGAATTCGGGACCTCTGGAGACGCATCTCTCGGCCACTGAGAGATATTTGAAGGATGAGGAATCGGTAGGAGACGACACGTGGCTTGCAAAGACTCATGGAGTCATGAAGAGCAAGTGGAACAAGGTGAAAGAGCTACTGGTGGATCGGGAGAAGAAGCTACAGTTGGCCTATGAGCAAGCGGTTGCGTTGGAGCAAGCGTTGAATGATATGGAGGCGTGGATTGTTGGTGAGTGGTTTTAGGGGGTGGGCGGGGCTTAAAATTGCCAGAAATAGGCTCAAAAATGACCGAAAAACTGGAAAAAAAGGATTACACTGTAGCTGAAAATCTGAAAATTTCGAGTTAAACTGAGCCAAAATCGTCTCAAAAATGACCCTAAAATGACCCAAAACGAGTCGGATTACTGTAGCTAGAATAAGGGTTACTGTAACTATCTTCATATTCTGTATTTTCGTTTACTGTAAATTACTGTGAATTTTGGCTAAAATAGGGGTTACTGTGGCTAGATGAAGGATTACTGTAACATTCTTCCTTTTTTTCTGGCTTTCGAAAAACTAGTCGGATTAATGTGGCTGGCAAAAAAAATTACTGTAGTTTGAACTCTAAAATGTTGGATTACGGTCGCTAGAATGAGGATTACTGTAGCCGAAATATCGGTAAACTCGAAAATGTTGAATTACGGTAGCTGAAAAAATTATATGACTCAAAAAGAGTCAGATTACAGTAGCTGAAATGTGGGTTACTGTAGCTAGAATAAGGATTACTGTAACTTACTTGAAAAAATGACCAAAAATAGTCCAGAATGGGTCAGATTACTGTAGCTGGGAAAATGATTACGGTAGGGTACAGTTGACAGCTAAAACATGGATTACTGTAGCTAGAGTAAGGATTACGGTAGCTAAAACGGGA</canonical>
            <polymorphic>GCACTGCAATCGACGAAACCAACTGGAGGACTTCCTGAAACTGCGGAATTCCAGTTGGACGAGTTCAAGGTGCTCAAATCGGATGTCGAGATGAATTCGGGACCTCTGGAGACGCATCTCTCGGCCACTGAGAGATATTTGAAGGATGAGGAATCGGTAGGAGACGACACGTGGCTTGCAAAGACTCATGGAGTCATGAAGAGCAAGTGGAACAAGGTGAAAGAGCTACTGGTGGATCGGGAGAAGAAGCTACAGTTGGCCTATGAGCAAGCGGTTGCGTTGGAGCAAGCGTTGAATGATATGGAGGCGTGGATTGTTGGTGAGTGGTTTTAGGGGGTGGGCGGGGCTTAAAATTGCCAGAAATAGGCTCAAAAATGACCGAAAAACTGGAAAAAAAGGATTACACTGTAGCTGAAAATCTGAAAATTTCGAGTTAAACTGAGCCAAAATCGTCTCAAAAATGACCCTAAAATGACCCAAAACGAGTCGGATTACTGTASCTAGAATAAGGGTTACTGTAACTATCTTCATATTCTGTATTTTCGTTTACTGTAAATTACTGTGAATTTTGGCTAAAATAGGGGTTACTGTGGCTAGATGAAGGATTACTGTAACATTCTTCCTTTTTTTCTGGCTTTCGAAAAACTAGTCGGATTAATGTGGCTGGCAAAAAAAATTACTGTAGTTTGAACTCTAAAATGTTGGATTACGGTCGCTAGAATGAGGATTACTGTAGCCGAAATATCGGTAAACTCGAAAATGTTGAATTACGGTAGCTGAAAAAATTATATGACTCAAAAAGAGTCAGATTACAGTAGCTGAAATGTGGGTTACTGTAGCTAGAATAAGGATTACTGTAACTTACTTGAAAAAATGACCAAAAATAGTCCAGAATGGGTCAGATTACTGTAGCTGGGAAAATGATTACGGTAGGGTACAGTTGACAGCTAAAACATGGATTACTGTAGCTAGAGTAAGGATTACGGTAGCTAAAACGGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>276 225 162 89 73 42 35 24 21 21 21 11</canonical_bands>
                <polymorphic_bands>365 225 162 73 42 35 24 21 21 21 11</polymorphic_bands>
            </assay>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>250 185 156 103 89 73 56 51 37</canonical_bands>
                <polymorphic_bands>274 250 156 103 73 56 51 37</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>124 87 73 73 72 57 51 50 44 42 41 40 35 32 29 24 21 21 21 21 21 11 10</canonical_bands>
                <polymorphic_bands>129 124 87 73 73 51 50 44 42 41 40 35 32 29 24 21 21 21 21 21 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTGTTGGTGAGTGGTTTTAG</pcr_primer_p1>
		<pcr_primer_p2>TGTTACAGTAATCCTTCATCTAGC</pcr_primer_p2>
		<pcr_amplicon_size>305</pcr_amplicon_size>
		<canonical_amplicon>GATTGTTGGTGAGTGGTTTTAGGGGGTGGGCGGGGCTTAAAATTGCCAGAAATAGGCTCAAAAATGACCGAAAAACTGGAAAAAAAGGATTACACTGTAGCTGAAAATCTGAAAATTTCGAGTTAAACTGAGCCAAAATCGTCTCAAAAATGACCCTAAAATGACCCAAAACGAGTCGGATTACTGTAGCTAGAATAAGGGTTACTGTAACTATCTTCATATTCTGTATTTTCGTTTACTGTAAATTACTGTGAATTTTGGCTAAAATAGGGGTTACTGTGGCTAGATGAAGGATTACTGTAACA</canonical_amplicon>
		<polymorphic_amplicon>GATTGTTGGTGAGTGGTTTTAGGGGGTGGGCGGGGCTTAAAATTGCCAGAAATAGGCTCAAAAATGACCGAAAAACTGGAAAAAAAGGATTACACTGTAGCTGAAAATCTGAAAATTTCGAGTTAAACTGAGCCAAAATCGTCTCAAAAATGACCCTAAAATGACCCAAAACGAGTCGGATTACTGTASCTAGAATAAGGGTTACTGTAACTATCTTCATATTCTGTATTTTCGTTTACTGTAAATTACTGTGAATTTTGGCTAAAATAGGGGTTACTGTGGCTAGATGAAGGATTACTGTAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15073</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>379486</contig_pos>
        <strand></strand>
        <context>TTCGAAATAA[T/A]TTCTCTAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CACAACATCAACATCAACCCGGATGTCCGTCGTCTTCTTCTTCGAAATAA</left_flank>
        <right_flank>TTCTCTAATTTTTAATTATTCGATTTTCTTCAAACCAAAATTTTCAAATT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTCAGAATTCCGAATCTCACCGAACTAGGTCGATATGAGTATCAAAATGACGGAAATCGCATGGAAAACAAAGTTGACGACGTGAAAATTTTAGAAAATGACGTTTTCAGAATTCAGAAGACGTCAAAAATCTTTGACATCTTCTAAATTTTGAAAACACAATATTCTGAAATTTTTATTTCGTAGACTTTTTTTCATGTGATTTCCGACGTTTTCATATGCATATTGCGATAGTTTGAAGAATTTTGAATTTGAAGTGAATTCAGAATCCCGAAGACGTCAAAATTCAGAATCTCACCGAACTAGGTTGATATGAGTATCAAAATGACGGAAATCGCATGGAAAACAAAGTTGACGACGTGAAAATTTTAGAAAATGACGTTTTCAGAATTCAGAAGACGTCAAAGATTTTTGAAGAAAAGAATTCCAAATTTTTGCAGATACACTCCACAACATCAACATCAACCCGGATGTCCGTCGTCTTCTTCTTCGAAATAATTTCTCTAATTTTTAATTATTCGATTTTCTTCAAACCAAAATTTTCAAATTCCCACCACCGGATTCTCAGAATTCTCCCCCCATTCATCTCCTCTACAGTACGCGCCGCCCATCCCGTCATCTTGGGTTACTGTAGGTGGAGATTTTGTTGAGAAGGGATGGATTACTGTAGCTCTTTTTTAATTCTCTGTGATCCTTTAATTTGTTTCCCCAAACTGTCTAAAATTCGATTCGAAAAACCGGTACTCTTCTTTTCGTTCATTTTTTCTATGATCCAAAAATTACGATCCAAATTCTTTTGTCTAATTTAATTATTGTAATTAATTAATTAATTAATTAATTACTGTTATCACATGATTATGCCTTCTCTTTTATGTCTTTCTCCGCTTTAATTAAACTATCATAAAGGTAAATAATTTATTTTTAAAATTCGATTTTTTTAAACAAATATATTCGAAAAAAAAATTTAAAAATTGATTCAAAAAAAATCTCATTTTGAAG</canonical>
            <polymorphic>CGTCAGAATTCCGAATCTCACCGAACTAGGTCGATATGAGTATCAAAATGACGGAAATCGCATGGAAAACAAAGTTGACGACGTGAAAATTTTAGAAAATGACGTTTTCAGAATTCAGAAGACGTCAAAAATCTTTGACATCTTCTAAATTTTGAAAACACAATATTCTGAAATTTTTATTTCGTAGACTTTTTTTCATGTGATTTCCGACGTTTTCATATGCATATTGCGATAGTTTGAAGAATTTTGAATTTGAAGTGAATTCAGAATCCCGAAGACGTCAAAATTCAGAATCTCACCGAACTAGGTTGATATGAGTATCAAAATGACGGAAATCGCATGGAAAACAAAGTTGACGACGTGAAAATTTTAGAAAATGACGTTTTCAGAATTCAGAAGACGTCAAAGATTTTTGAAGAAAAGAATTCCAAATTTTTGCAGATACACTCCACAACATCAACATCAACCCGGATGTCCGTCGTCTTCTTCTTCGAAATAAWTTCTCTAATTTTTAATTATTCGATTTTCTTCAAACCAAAATTTTCAAATTCCCACCACCGGATTCTCAGAATTCTCCCCCCATTCATCTCCTCTACAGTACGCGCCGCCCATCCCGTCATCTTGGGTTACTGTAGGTGGAGATTTTGTTGAGAAGGGATGGATTACTGTAGCTCTTTTTTAATTCTCTGTGATCCTTTAATTTGTTTCCCCAAACTGTCTAAAATTCGATTCGAAAAACCGGTACTCTTCTTTTCGTTCATTTTTTCTATGATCCAAAAATTACGATCCAAATTCTTTTGTCTAATTTAATTATTGTAATTAATTAATTAATTAATTAATTACTGTTATCACATGATTATGCCTTCTCTTTTATGTCTTTCTCCGCTTTAATTAAACTATCATAAAGGTAAATAATTTATTTTTAAAATTCGATTTTTTTAAACAAATATATTCGAAAAAAAAATTTAAAAATTGATTCAAAAAAAATCTCATTTTGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>111 81 81 71 67 56 52 36 36 34 30 25 24 24 24 24 24 24 23 18 13 13 12 11 9 9 8 8 7 7 7 6 5 4 4 4 4 4</canonical_bands>
                <polymorphic_bands>111 81 81 76 71 56 52 36 36 34 30 25 24 24 24 24 24 24 23 18 13 13 12 11 9 8 8 7 7 7 6 5 4 4 4 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTCCAAATTTTTGCAGATAC</pcr_primer_p1>
		<pcr_primer_p2>CTACAGTAATCCATCCCTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATTCCAAATTTTTGCAGATACACTCCACAACATCAACATCAACCCGGATGTCCGTCGTCTTCTTCTTCGAAATAATTTCTCTAATTTTTAATTATTCGATTTTCTTCAAACCAAAATTTTCAAATTCCCACCACCGGATTCTCAGAATTCTCCCCCCATTCATCTCCTCTACAGTACGCGCCGCCCATCCCGTCATCTTGGGTTACTGTAGGTGGAGATTTTGTTGAGAAGGGATGGATTACTGTAG</canonical_amplicon>
		<polymorphic_amplicon>AATTCCAAATTTTTGCAGATACACTCCACAACATCAACATCAACCCGGATGTCCGTCGTCTTCTTCTTCGAAATAAWTTCTCTAATTTTTAATTATTCGATTTTCTTCAAACCAAAATTTTCAAATTCCCACCACCGGATTCTCAGAATTCTCCCCCCATTCATCTCCTCTACAGTACGCGCCGCCCATCCCGTCATCTTGGGTTACTGTAGGTGGAGATTTTGTTGAGAAGGGATGGATTACTGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15074</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>379506</contig_pos>
        <strand></strand>
        <context>TTTTAATTAT[T/A]YGATTTTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GGATGTCCGTCGTCTTCTTCTTCGAAATAATTTCTCTAATTTTTAATTAT</left_flank>
        <right_flank>CGATTTTCTTCAAACCAAAATTTTCAAATTCCCACCACCGGATTCTCAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGAACTAGGTCGATATGAGTATCAAAATGACGGAAATCGCATGGAAAACAAAGTTGACGACGTGAAAATTTTAGAAAATGACGTTTTCAGAATTCAGAAGACGTCAAAAATCTTTGACATCTTCTAAATTTTGAAAACACAATATTCTGAAATTTTTATTTCGTAGACTTTTTTTCATGTGATTTCCGACGTTTTCATATGCATATTGCGATAGTTTGAAGAATTTTGAATTTGAAGTGAATTCAGAATCCCGAAGACGTCAAAATTCAGAATCTCACCGAACTAGGTTGATATGAGTATCAAAATGACGGAAATCGCATGGAAAACAAAGTTGACGACGTGAAAATTTTAGAAAATGACGTTTTCAGAATTCAGAAGACGTCAAAGATTTTTGAAGAAAAGAATTCCAAATTTTTGCAGATACACTCCACAACATCAACATCAACCCGGATGTCCGTCGTCTTCTTCTTCGAAATAATTTCTCTAATTTTTAATTATTCGATTTTCTTCAAACCAAAATTTTCAAATTCCCACCACCGGATTCTCAGAATTCTCCCCCCATTCATCTCCTCTACAGTACGCGCCGCCCATCCCGTCATCTTGGGTTACTGTAGGTGGAGATTTTGTTGAGAAGGGATGGATTACTGTAGCTCTTTTTTAATTCTCTGTGATCCTTTAATTTGTTTCCCCAAACTGTCTAAAATTCGATTCGAAAAACCGGTACTCTTCTTTTCGTTCATTTTTTCTATGATCCAAAAATTACGATCCAAATTCTTTTGTCTAATTTAATTATTGTAATTAATTAATTAATTAATTAATTACTGTTATCACATGATTATGCCTTCTCTTTTATGTCTTTCTCCGCTTTAATTAAACTATCATAAAGGTAAATAATTTATTTTTAAAATTCGATTTTTTTAAACAAATATATTCGAAAAAAAAATTTAAAAATTGATTCAAAAAAAATCTCATTTTGAAGCTCTAAAATCAAGCAATTTA</canonical>
            <polymorphic>CCGAACTAGGTCGATATGAGTATCAAAATGACGGAAATCGCATGGAAAACAAAGTTGACGACGTGAAAATTTTAGAAAATGACGTTTTCAGAATTCAGAAGACGTCAAAAATCTTTGACATCTTCTAAATTTTGAAAACACAATATTCTGAAATTTTTATTTCGTAGACTTTTTTTCATGTGATTTCCGACGTTTTCATATGCATATTGCGATAGTTTGAAGAATTTTGAATTTGAAGTGAATTCAGAATCCCGAAGACGTCAAAATTCAGAATCTCACCGAACTAGGTTGATATGAGTATCAAAATGACGGAAATCGCATGGAAAACAAAGTTGACGACGTGAAAATTTTAGAAAATGACGTTTTCAGAATTCAGAAGACGTCAAAGATTTTTGAAGAAAAGAATTCCAAATTTTTGCAGATACACTCCACAACATCAACATCAACCCGGATGTCCGTCGTCTTCTTCTTCGAAATAATTTCTCTAATTTTTAATTATWCGATTTTCTTCAAACCAAAATTTTCAAATTCCCACCACCGGATTCTCAGAATTCTCCCCCCATTCATCTCCTCTACAGTACGCGCCGCCCATCCCGTCATCTTGGGTTACTGTAGGTGGAGATTTTGTTGAGAAGGGATGGATTACTGTAGCTCTTTTTTAATTCTCTGTGATCCTTTAATTTGTTTCCCCAAACTGTCTAAAATTCGATTCGAAAAACCGGTACTCTTCTTTTCGTTCATTTTTTCTATGATCCAAAAATTACGATCCAAATTCTTTTGTCTAATTTAATTATTGTAATTAATTAATTAATTAATTAATTACTGTTATCACATGATTATGCCTTCTCTTTTATGTCTTTCTCCGCTTTAATTAAACTATCATAAAGGTAAATAATTTATTTTTAAAATTCGATTTTTTTAAACAAATATATTCGAAAAAAAAATTTAAAAATTGATTCAAAAAAAATCTCATTTTGAAGCTCTAAAATCAAGCAATTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>460 206 199 66 29 23 12 5</canonical_bands>
                <polymorphic_bands>460 235 199 66 23 12 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTCCAAATTTTTGCAGATAC</pcr_primer_p1>
		<pcr_primer_p2>CTACAGTAATCCATCCCTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATTCCAAATTTTTGCAGATACACTCCACAACATCAACATCAACCCGGATGTCCGTCGTCTTCTTCTTCGAAATAATTTCTCTAATTTTTAATTATTCGATTTTCTTCAAACCAAAATTTTCAAATTCCCACCACCGGATTCTCAGAATTCTCCCCCCATTCATCTCCTCTACAGTACGCGCCGCCCATCCCGTCATCTTGGGTTACTGTAGGTGGAGATTTTGTTGAGAAGGGATGGATTACTGTAG</canonical_amplicon>
		<polymorphic_amplicon>AATTCCAAATTTTTGCAGATACACTCCACAACATCAACATCAACCCGGATGTCCGTCGTCTTCTTCTTCGAAATAATTTCTCTAATTTTTAATTATWCGATTTTCTTCAAACCAAAATTTTCAAATTCCCACCACCGGATTCTCAGAATTCTCCCCCCATTCATCTCCTCTACAGTACGCGCCGCCCATCCCGTCATCTTGGGTTACTGTAGGTGGAGATTTTGTTGAGAAGGGATGGATTACTGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15075</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>379507</contig_pos>
        <strand></strand>
        <context>TTTAATTATW[C/T]GATTTTCTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATGTCCGTCGTCTTCTTCTTCGAAATAATTTCTCTAATTTTTAATTATT</left_flank>
        <right_flank>GATTTTCTTCAAACCAAAATTTTCAAATTCCCACCACCGGATTCTCAGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAACTAGGTCGATATGAGTATCAAAATGACGGAAATCGCATGGAAAACAAAGTTGACGACGTGAAAATTTTAGAAAATGACGTTTTCAGAATTCAGAAGACGTCAAAAATCTTTGACATCTTCTAAATTTTGAAAACACAATATTCTGAAATTTTTATTTCGTAGACTTTTTTTCATGTGATTTCCGACGTTTTCATATGCATATTGCGATAGTTTGAAGAATTTTGAATTTGAAGTGAATTCAGAATCCCGAAGACGTCAAAATTCAGAATCTCACCGAACTAGGTTGATATGAGTATCAAAATGACGGAAATCGCATGGAAAACAAAGTTGACGACGTGAAAATTTTAGAAAATGACGTTTTCAGAATTCAGAAGACGTCAAAGATTTTTGAAGAAAAGAATTCCAAATTTTTGCAGATACACTCCACAACATCAACATCAACCCGGATGTCCGTCGTCTTCTTCTTCGAAATAATTTCTCTAATTTTTAATTATTCGATTTTCTTCAAACCAAAATTTTCAAATTCCCACCACCGGATTCTCAGAATTCTCCCCCCATTCATCTCCTCTACAGTACGCGCCGCCCATCCCGTCATCTTGGGTTACTGTAGGTGGAGATTTTGTTGAGAAGGGATGGATTACTGTAGCTCTTTTTTAATTCTCTGTGATCCTTTAATTTGTTTCCCCAAACTGTCTAAAATTCGATTCGAAAAACCGGTACTCTTCTTTTCGTTCATTTTTTCTATGATCCAAAAATTACGATCCAAATTCTTTTGTCTAATTTAATTATTGTAATTAATTAATTAATTAATTAATTACTGTTATCACATGATTATGCCTTCTCTTTTATGTCTTTCTCCGCTTTAATTAAACTATCATAAAGGTAAATAATTTATTTTTAAAATTCGATTTTTTTAAACAAATATATTCGAAAAAAAAATTTAAAAATTGATTCAAAAAAAATCTCATTTTGAAGCTCTAAAATCAAGCAATTTAA</canonical>
            <polymorphic>CGAACTAGGTCGATATGAGTATCAAAATGACGGAAATCGCATGGAAAACAAAGTTGACGACGTGAAAATTTTAGAAAATGACGTTTTCAGAATTCAGAAGACGTCAAAAATCTTTGACATCTTCTAAATTTTGAAAACACAATATTCTGAAATTTTTATTTCGTAGACTTTTTTTCATGTGATTTCCGACGTTTTCATATGCATATTGCGATAGTTTGAAGAATTTTGAATTTGAAGTGAATTCAGAATCCCGAAGACGTCAAAATTCAGAATCTCACCGAACTAGGTTGATATGAGTATCAAAATGACGGAAATCGCATGGAAAACAAAGTTGACGACGTGAAAATTTTAGAAAATGACGTTTTCAGAATTCAGAAGACGTCAAAGATTTTTGAAGAAAAGAATTCCAAATTTTTGCAGATACACTCCACAACATCAACATCAACCCGGATGTCCGTCGTCTTCTTCTTCGAAATAATTTCTCTAATTTTTAATTATTYGATTTTCTTCAAACCAAAATTTTCAAATTCCCACCACCGGATTCTCAGAATTCTCCCCCCATTCATCTCCTCTACAGTACGCGCCGCCCATCCCGTCATCTTGGGTTACTGTAGGTGGAGATTTTGTTGAGAAGGGATGGATTACTGTAGCTCTTTTTTAATTCTCTGTGATCCTTTAATTTGTTTCCCCAAACTGTCTAAAATTCGATTCGAAAAACCGGTACTCTTCTTTTCGTTCATTTTTTCTATGATCCAAAAATTACGATCCAAATTCTTTTGTCTAATTTAATTATTGTAATTAATTAATTAATTAATTAATTACTGTTATCACATGATTATGCCTTCTCTTTTATGTCTTTCTCCGCTTTAATTAAACTATCATAAAGGTAAATAATTTATTTTTAAAATTCGATTTTTTTAAACAAATATATTCGAAAAAAAAATTTAAAAATTGATTCAAAAAAAATCTCATTTTGAAGCTCTAAAATCAAGCAATTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>460 206 199 67 29 23 11 5</canonical_bands>
                <polymorphic_bands>460 235 199 67 23 11 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTCCAAATTTTTGCAGATAC</pcr_primer_p1>
		<pcr_primer_p2>CTACAGTAATCCATCCCTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATTCCAAATTTTTGCAGATACACTCCACAACATCAACATCAACCCGGATGTCCGTCGTCTTCTTCTTCGAAATAATTTCTCTAATTTTTAATTATTCGATTTTCTTCAAACCAAAATTTTCAAATTCCCACCACCGGATTCTCAGAATTCTCCCCCCATTCATCTCCTCTACAGTACGCGCCGCCCATCCCGTCATCTTGGGTTACTGTAGGTGGAGATTTTGTTGAGAAGGGATGGATTACTGTAG</canonical_amplicon>
		<polymorphic_amplicon>AATTCCAAATTTTTGCAGATACACTCCACAACATCAACATCAACCCGGATGTCCGTCGTCTTCTTCTTCGAAATAATTTCTCTAATTTTTAATTATTYGATTTTCTTCAAACCAAAATTTTCAAATTCCCACCACCGGATTCTCAGAATTCTCCCCCCATTCATCTCCTCTACAGTACGCGCCGCCCATCCCGTCATCTTGGGTTACTGTAGGTGGAGATTTTGTTGAGAAGGGATGGATTACTGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15076</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>382416</contig_pos>
        <strand>+</strand>
        <context>AGGGGAGCTG[C/G]TTATGGGTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATGGATCGATGGAATTGAGAATATGGGATGGAAAAATGCAGGGGAGCTG</left_flank>
        <right_flank>TTATGGGTAAGATTTCTTGTTAGAACACTTTCTTAGCTACATTTTGCAGT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATAGGTCATGTTTATACTCATTTTGAAGCATTTGACGAGAAAAAATCATTTCTGAAAGTTTCATCAAATTTTAAATGAAAATAAGATCCTTTCTTGTGTACATATCCTACTGTAACTTTCTTCAATTTAGCCCAAACGCCAAAATTTTTCTGAATTTTGAATTTAGCTTGTTTGGAGCTTTAAAATGCCTAAAAATCAGTTCCAAACTTTCAGAAATCCTAAAAATCAGTGATTTCGGCTTATCAGTTCGATTCAAGGATGAAAATGGCATCTCATCTCTTGTGGAACCTTCTGGAAGCGCCTTATATCGATCACCGGAATGTAGAAAATGCGCTCTAATCGACGGACCAAAATCGGATATTTTTTCAAGTGGAGTGGTTCTTGTTGAGATGTTAAATGGGTGTTATCCATGGGAAGAGGCGACAGAAACTGATGAGAATTATAAGAAATGGATCGATGGAATTGAGAATATGGGATGGAAAAATGCAGGGGAGCTGGTTATGGGTAAGATTTCTTGTTAGAACACTTTCTTAGCTACATTTTGCAGTTTGAATTTCAAAAAAATATGAGATTTAAAGAAAGTTACAACCTTTTTTTTGAGACTATGTCTAGTTTTGTCTGTAACTTCTTTCAAAATTAATATTTTTTCAAAATTCAAGCTGCAAAATGTAGATCTTTGAATTTCCTACATTTGTATATAAAAAATACTACTAGTTGAATTATGGTCCAAGCACTGGGAGGGCGCGAAACGGGCCGGTCAGTTGGAGGCCAGCAGGCGCCCAACGCAGCTTTCGGTTTAGCGCCCTCGTAAAACTGGGACCATGATTCAACAAGTAGAATTTTATATATAAAAACGTAGAACTTTTGAAAAGCTACATTTTGCAATTTGAATTTTCAGAGAATATTGATTTTGAAGCGAGATACAAACCGAAGAAAATAGGATGCACAACATTTGTTGAGATTTTTTGATTTTCTTTGTTTTGTTTTGGCTATAACTT</canonical>
            <polymorphic>ATATAGGTCATGTTTATACTCATTTTGAAGCATTTGACGAGAAAAAATCATTTCTGAAAGTTTCATCAAATTTTAAATGAAAATAAGATCCTTTCTTGTGTACATATCCTACTGTAACTTTCTTCAATTTAGCCCAAACGCCAAAATTTTTCTGAATTTTGAATTTAGCTTGTTTGGAGCTTTAAAATGCCTAAAAATCAGTTCCAAACTTTCAGAAATCCTAAAAATCAGTGATTTCGGCTTATCAGTTCGATTCAAGGATGAAAATGGCATCTCATCTCTTGTGGAACCTTCTGGAAGCGCCTTATATCGATCACCGGAATGTAGAAAATGCGCTCTAATCGACGGACCAAAATCGGATATTTTTTCAAGTGGAGTGGTTCTTGTTGAGATGTTAAATGGGTGTTATCCATGGGAAGAGGCGACAGAAACTGATGAGAATTATAAGAAATGGATCGATGGAATTGAGAATATGGGATGGAAAAATGCAGGGGAGCTGSTTATGGGTAAGATTTCTTGTTAGAACACTTTCTTAGCTACATTTTGCAGTTTGAATTTCAAAAAAATATGAGATTTAAAGAAAGTTACAACCTTTTTTTTGAGACTATGTCTAGTTTTGTCTGTAACTTCTTTCAAAATTAATATTTTTTCAAAATTCAAGCTGCAAAATGTAGATCTTTGAATTTCCTACATTTGTATATAAAAAATACTACTAGTTGAATTATGGTCCAAGCACTGGGAGGGCGCGAAACGGGCCGGTCAGTTGGAGGCCAGCAGGCGCCCAACGCAGCTTTCGGTTTAGCGCCCTCGTAAAACTGGGACCATGATTCAACAAGTAGAATTTTATATATAAAAACGTAGAACTTTTGAAAAGCTACATTTTGCAATTTGAATTTTCAGAGAATATTGATTTTGAAGCGAGATACAAACCGAAGAAAATAGGATGCACAACATTTGTTGAGATTTTTTGATTTTCTTTGTTTTGTTTTGGCTATAACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGATGTTAAATGGGTGTTAT</pcr_primer_p1>
		<pcr_primer_p2>TTGAAAGAAGTTACAGACAAAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGAGATGTTAAATGGGTGTTATCCATGGGAAGAGGCGACAGAAACTGATGAGAATTATAAGAAATGGATCGATGGAATTGAGAATATGGGATGGAAAAATGCAGGGGAGCTGGTTATGGGTAAGATTTCTTGTTAGAACACTTTCTTAGCTACATTTTGCAGTTTGAATTTCAAAAAAATATGAGATTTAAAGAAAGTTACAACCTTTTTTTTGAGACTATGTCTAGTTTTGTCTGTAACTTCTTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TTGAGATGTTAAATGGGTGTTATCCATGGGAAGAGGCGACAGAAACTGATGAGAATTATAAGAAATGGATCGATGGAATTGAGAATATGGGATGGAAAAATGCAGGGGAGCTGSTTATGGGTAAGATTTCTTGTTAGAACACTTTCTTAGCTACATTTTGCAGTTTGAATTTCAAAAAAATATGAGATTTAAAGAAAGTTACAACCTTTTTTTTGAGACTATGTCTAGTTTTGTCTGTAACTTCTTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15078</snp_id>
        <super_contig>c008401196.Contig2</super_contig>
        <contig_pos>50610</contig_pos>
        <strand>+</strand>
        <context>TGAAAGATAC[A/T]TTTTTCCGCM</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCCTGTAAGATTCGAAACTTTTGAAAATCGAGATATCCTGAAAGATAC</left_flank>
        <right_flank>TTTTTCCGCCTTTCTAGTTTTCAAGGTCACATGGAAATTCTTTCTTTGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTTATGGGTTCAGAAGAGAGGGAGAAAAGAACCAAATGTTTTGACAACAGAAACCCCCTCACAAAGATTAGTCATGGTTCGCTGGCGTTTTGATGTTGCGCGTGGTATTGTGGTATGGCCAGAGGTAGATGGGACGGGACTGGGGTACCTTTAGCGCGTTTTTGAGCATTTTAGCTCATTTCTGAAAAAATATCTAGACAGACAGGTGTTCGGAATTCGCTTCGAAAATACTATTAAACCTGTAATAGAAGGGCACCCTAACTTTCAACCAAATTTGAGCAAATTTTGCATGATCCCTGTCAAAGATATGAAAATCTTGTCAACTAATAAAATGTTAGTCATAACATCAGAAGTGTTCTGTCAGTTGACGCATTTTCGATATCTTTTACAGAAACTGAAATAATTGAGCTCAAACTGGAGTATGTGGGGCCTTTCTATTACAGGTTTTCCTGTAAGATTCGAAACTTTTGAAAATCGAGATATCCTGAAAGATACTTTTTTCCGCCTTTCTAGTTTTCAAGGTCACATGGAAATTCTTTCTTTGAATATTCGTTTTCTAAGATTGTCATATTTTAGTCGCATAGTGTAAGACCCAGAAGTTCTAATAATTCTTATGGTCTGGGTTATCTACTGGAAAGTTACAAACTGCTGAAATCGCTGCTTCTTGTAGTTTTGCAAATCATACGGTTTCTGGGTGCTTTGGTTCATTTTAAGATTTTAACAAAGTTCTTAAGCTTTCAGAATTCTGAATTCTGGACTAGAAGGTTTAGAATATTGAATTCCTGTATACTGTAAAGCCTGTAATAGCAGGGCCCAGCACTTCTAGACTTGAGCCAATTTTTCTCGGTTCCTGTCTTGACACATTTTTAATACCTTGTATAGGAATTGAGATAATAAAGCTCAAACTTGACAGTGCGAGGGTCCTTCTATTACAGGTTTCAAAATTACCAGATCTCTTCGGCTTCATTATGAGCTTCATTTCCTAGATTTTCTAAA</canonical>
            <polymorphic>AAATTTTATGGGTTCAGAAGAGAGGGAGAAAAGAACCAAATGTTTTGACAACAGAAACCCCCTCACAAAGATTAGTCATGGTTCGCTGGCGTTTTGATGTTGCGCGTGGTATTGTGGTATGGCCAGAGGTAGATGGGACGGGACTGGGGTACCTTTAGCGCGTTTTTGAGCATTTTAGCTCATTTCTGAAAAAATATCTAGACAGACAGGTGTTCGGAATTCGCTTCGAAAATACTATTAAACCTGTAATAGAAGGGCACCCTAACTTTCAACCAAATTTGAGCAAATTTTGCATGATCCCTGTCAAAGATATGAAAATCTTGTCAACTAATAAAATGTTAGTCATAACATCAGAAGTGTTCTGTCAGTTGACGCATTTTCGATATCTTTTACAGAAACTGAAATAATTGAGCTCAAACTGGAGTATGTGGGGCCTTTCTATTACAGGTTTTCCTGTAAGATTCGAAACTTTTGAAAATCGAGATATCCTGAAAGATACWTTTTTCCGCCTTTCTAGTTTTCAAGGTCACATGGAAATTCTTTCTTTGAATATTCGTTTTCTAAGATTGTCATATTTTAGTCGCATAGTGTAAGACCCAGAAGTTCTAATAATTCTTATGGTCTGGGTTATCTACTGGAAAGTTACAAACTGCTGAAATCGCTGCTTCTTGTAGTTTTGCAAATCATACGGTTTCTGGGTGCTTTGGTTCATTTTAAGATTTTAACAAAGTTCTTAAGCTTTCAGAATTCTGAATTCTGGACTAGAAGGTTTAGAATATTGAATTCCTGTATACTGTAAAGCCTGTAATAGCAGGGCCCAGCACTTCTAGACTTGAGCCAATTTTTCTCGGTTCCTGTCTTGACACATTTTTAATACCTTGTATAGGAATTGAGATAATAAAGCTCAAACTTGACAGTGCGAGGGTCCTTCTATTACAGGTTTCAAAATTACCAGATCTCTTCGGCTTCATTATGAGCTTCATTTCCTAGATTTTCTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATATCTAGACAGACAGGTGTTC</pcr_primer_p1>
		<pcr_primer_p2>AACGAATATTCAAAGAAAGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>368</pcr_amplicon_size>
		<canonical_amplicon>AAAATATCTAGACAGACAGGTGTTCGGAATTCGCTTCGAAAATACTATTAAACCTGTAATAGAAGGGCACCCTAACTTTCAACCAAATTTGAGCAAATTTTGCATGATCCCTGTCAAAGATATGAAAATCTTGTCAACTAATAAAATGTTAGTCATAACATCAGAAGTGTTCTGTCAGTTGACGCATTTTCGATATCTTTTACAGAAACTGAAATAATTGAGCTCAAACTGGAGTATGTGGGGCCTTTCTATTACAGGTTTTCCTGTAAGATTCGAAACTTTTGAAAATCGAGATATCCTGAAAGATACTTTTTTCCGCCTTTCTAGTTTTCAAGGTCACATGGAAATTCTTTCTTTGAATATTCGTT</canonical_amplicon>
		<polymorphic_amplicon>AAAATATCTAGACAGACAGGTGTTCGGAATTCGCTTCGAAAATACTATTAAACCTGTAATAGAAGGGCACCCTAACTTTCAACCAAATTTGAGCAAATTTTGCATGATCCCTGTCAAAGATATGAAAATCTTGTCAACTAATAAAATGTTAGTCATAACATCAGAAGTGTTCTGTCAGTTGACGCATTTTCGATATCTTTTACAGAAACTGAAATAATTGAGCTCAAACTGGAGTATGTGGGGCCTTTCTATTACAGGTTTTCCTGTAAGATTCGAAACTTTTGAAAATCGAGATATCCTGAAAGATACWTTTTTCCGCCTTTCTAGTTTTCAAGGTCACATGGAAATTCTTTCTTTGAATATTCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15079</snp_id>
        <super_contig>c008401196.Contig2</super_contig>
        <contig_pos>50620</contig_pos>
        <strand>+</strand>
        <context>WTTTTTCCGC[A/C]TTTYTAGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATTCGAAACTTTTGAAAATCGAGATATCCTGAAAGATACTTTTTTCCGC</left_flank>
        <right_flank>TTTCTAGTTTTCAAGGTCACATGGAAATTCTTTCTTTGAATATTCGTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTCAGAAGAGAGGGAGAAAAGAACCAAATGTTTTGACAACAGAAACCCCCTCACAAAGATTAGTCATGGTTCGCTGGCGTTTTGATGTTGCGCGTGGTATTGTGGTATGGCCAGAGGTAGATGGGACGGGACTGGGGTACCTTTAGCGCGTTTTTGAGCATTTTAGCTCATTTCTGAAAAAATATCTAGACAGACAGGTGTTCGGAATTCGCTTCGAAAATACTATTAAACCTGTAATAGAAGGGCACCCTAACTTTCAACCAAATTTGAGCAAATTTTGCATGATCCCTGTCAAAGATATGAAAATCTTGTCAACTAATAAAATGTTAGTCATAACATCAGAAGTGTTCTGTCAGTTGACGCATTTTCGATATCTTTTACAGAAACTGAAATAATTGAGCTCAAACTGGAGTATGTGGGGCCTTTCTATTACAGGTTTTCCTGTAAGATTCGAAACTTTTGAAAATCGAGATATCCTGAAAGATACTTTTTTCCGCCTTTCTAGTTTTCAAGGTCACATGGAAATTCTTTCTTTGAATATTCGTTTTCTAAGATTGTCATATTTTAGTCGCATAGTGTAAGACCCAGAAGTTCTAATAATTCTTATGGTCTGGGTTATCTACTGGAAAGTTACAAACTGCTGAAATCGCTGCTTCTTGTAGTTTTGCAAATCATACGGTTTCTGGGTGCTTTGGTTCATTTTAAGATTTTAACAAAGTTCTTAAGCTTTCAGAATTCTGAATTCTGGACTAGAAGGTTTAGAATATTGAATTCCTGTATACTGTAAAGCCTGTAATAGCAGGGCCCAGCACTTCTAGACTTGAGCCAATTTTTCTCGGTTCCTGTCTTGACACATTTTTAATACCTTGTATAGGAATTGAGATAATAAAGCTCAAACTTGACAGTGCGAGGGTCCTTCTATTACAGGTTTCAAAATTACCAGATCTCTTCGGCTTCATTATGAGCTTCATTTCCTAGATTTTCTAAATCCAAAGACT</canonical>
            <polymorphic>GGTTCAGAAGAGAGGGAGAAAAGAACCAAATGTTTTGACAACAGAAACCCCCTCACAAAGATTAGTCATGGTTCGCTGGCGTTTTGATGTTGCGCGTGGTATTGTGGTATGGCCAGAGGTAGATGGGACGGGACTGGGGTACCTTTAGCGCGTTTTTGAGCATTTTAGCTCATTTCTGAAAAAATATCTAGACAGACAGGTGTTCGGAATTCGCTTCGAAAATACTATTAAACCTGTAATAGAAGGGCACCCTAACTTTCAACCAAATTTGAGCAAATTTTGCATGATCCCTGTCAAAGATATGAAAATCTTGTCAACTAATAAAATGTTAGTCATAACATCAGAAGTGTTCTGTCAGTTGACGCATTTTCGATATCTTTTACAGAAACTGAAATAATTGAGCTCAAACTGGAGTATGTGGGGCCTTTCTATTACAGGTTTTCCTGTAAGATTCGAAACTTTTGAAAATCGAGATATCCTGAAAGATACTTTTTTCCGCMTTTCTAGTTTTCAAGGTCACATGGAAATTCTTTCTTTGAATATTCGTTTTCTAAGATTGTCATATTTTAGTCGCATAGTGTAAGACCCAGAAGTTCTAATAATTCTTATGGTCTGGGTTATCTACTGGAAAGTTACAAACTGCTGAAATCGCTGCTTCTTGTAGTTTTGCAAATCATACGGTTTCTGGGTGCTTTGGTTCATTTTAAGATTTTAACAAAGTTCTTAAGCTTTCAGAATTCTGAATTCTGGACTAGAAGGTTTAGAATATTGAATTCCTGTATACTGTAAAGCCTGTAATAGCAGGGCCCAGCACTTCTAGACTTGAGCCAATTTTTCTCGGTTCCTGTCTTGACACATTTTTAATACCTTGTATAGGAATTGAGATAATAAAGCTCAAACTTGACAGTGCGAGGGTCCTTCTATTACAGGTTTCAAAATTACCAGATCTCTTCGGCTTCATTATGAGCTTCATTTCCTAGATTTTCTAAATCCAAAGACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATATCTAGACAGACAGGTGTTC</pcr_primer_p1>
		<pcr_primer_p2>AATATGACAATCTTAGAAAACGAATA</pcr_primer_p2>
		<pcr_amplicon_size>386</pcr_amplicon_size>
		<canonical_amplicon>AAAATATCTAGACAGACAGGTGTTCGGAATTCGCTTCGAAAATACTATTAAACCTGTAATAGAAGGGCACCCTAACTTTCAACCAAATTTGAGCAAATTTTGCATGATCCCTGTCAAAGATATGAAAATCTTGTCAACTAATAAAATGTTAGTCATAACATCAGAAGTGTTCTGTCAGTTGACGCATTTTCGATATCTTTTACAGAAACTGAAATAATTGAGCTCAAACTGGAGTATGTGGGGCCTTTCTATTACAGGTTTTCCTGTAAGATTCGAAACTTTTGAAAATCGAGATATCCTGAAAGATACTTTTTTCCGCCTTTCTAGTTTTCAAGGTCACATGGAAATTCTTTCTTTGAATATTCGTTTTCTAAGATTGTCATATT</canonical_amplicon>
		<polymorphic_amplicon>AAAATATCTAGACAGACAGGTGTTCGGAATTCGCTTCGAAAATACTATTAAACCTGTAATAGAAGGGCACCCTAACTTTCAACCAAATTTGAGCAAATTTTGCATGATCCCTGTCAAAGATATGAAAATCTTGTCAACTAATAAAATGTTAGTCATAACATCAGAAGTGTTCTGTCAGTTGACGCATTTTCGATATCTTTTACAGAAACTGAAATAATTGAGCTCAAACTGGAGTATGTGGGGCCTTTCTATTACAGGTTTTCCTGTAAGATTCGAAACTTTTGAAAATCGAGATATCCTGAAAGATACTTTTTTCCGCMTTTCTAGTTTTCAAGGTCACATGGAAATTCTTTCTTTGAATATTCGTTTTCTAAGATTGTCATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15080</snp_id>
        <super_contig>c008401196.Contig2</super_contig>
        <contig_pos>50624</contig_pos>
        <strand>+</strand>
        <context>TTCCGCMTTT[C/T]TAGTTTTCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAAACTTTTGAAAATCGAGATATCCTGAAAGATACTTTTTTCCGCCTTT</left_flank>
        <right_flank>TAGTTTTCAAGGTCACATGGAAATTCTTTCTTTGAATATTCGTTTTCTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAAGAGAGGGAGAAAAGAACCAAATGTTTTGACAACAGAAACCCCCTCACAAAGATTAGTCATGGTTCGCTGGCGTTTTGATGTTGCGCGTGGTATTGTGGTATGGCCAGAGGTAGATGGGACGGGACTGGGGTACCTTTAGCGCGTTTTTGAGCATTTTAGCTCATTTCTGAAAAAATATCTAGACAGACAGGTGTTCGGAATTCGCTTCGAAAATACTATTAAACCTGTAATAGAAGGGCACCCTAACTTTCAACCAAATTTGAGCAAATTTTGCATGATCCCTGTCAAAGATATGAAAATCTTGTCAACTAATAAAATGTTAGTCATAACATCAGAAGTGTTCTGTCAGTTGACGCATTTTCGATATCTTTTACAGAAACTGAAATAATTGAGCTCAAACTGGAGTATGTGGGGCCTTTCTATTACAGGTTTTCCTGTAAGATTCGAAACTTTTGAAAATCGAGATATCCTGAAAGATACTTTTTTCCGCCTTTCTAGTTTTCAAGGTCACATGGAAATTCTTTCTTTGAATATTCGTTTTCTAAGATTGTCATATTTTAGTCGCATAGTGTAAGACCCAGAAGTTCTAATAATTCTTATGGTCTGGGTTATCTACTGGAAAGTTACAAACTGCTGAAATCGCTGCTTCTTGTAGTTTTGCAAATCATACGGTTTCTGGGTGCTTTGGTTCATTTTAAGATTTTAACAAAGTTCTTAAGCTTTCAGAATTCTGAATTCTGGACTAGAAGGTTTAGAATATTGAATTCCTGTATACTGTAAAGCCTGTAATAGCAGGGCCCAGCACTTCTAGACTTGAGCCAATTTTTCTCGGTTCCTGTCTTGACACATTTTTAATACCTTGTATAGGAATTGAGATAATAAAGCTCAAACTTGACAGTGCGAGGGTCCTTCTATTACAGGTTTCAAAATTACCAGATCTCTTCGGCTTCATTATGAGCTTCATTTCCTAGATTTTCTAAATCCAAAGACTGTAC</canonical>
            <polymorphic>CAGAAGAGAGGGAGAAAAGAACCAAATGTTTTGACAACAGAAACCCCCTCACAAAGATTAGTCATGGTTCGCTGGCGTTTTGATGTTGCGCGTGGTATTGTGGTATGGCCAGAGGTAGATGGGACGGGACTGGGGTACCTTTAGCGCGTTTTTGAGCATTTTAGCTCATTTCTGAAAAAATATCTAGACAGACAGGTGTTCGGAATTCGCTTCGAAAATACTATTAAACCTGTAATAGAAGGGCACCCTAACTTTCAACCAAATTTGAGCAAATTTTGCATGATCCCTGTCAAAGATATGAAAATCTTGTCAACTAATAAAATGTTAGTCATAACATCAGAAGTGTTCTGTCAGTTGACGCATTTTCGATATCTTTTACAGAAACTGAAATAATTGAGCTCAAACTGGAGTATGTGGGGCCTTTCTATTACAGGTTTTCCTGTAAGATTCGAAACTTTTGAAAATCGAGATATCCTGAAAGATACTTTTTTCCGCCTTTYTAGTTTTCAAGGTCACATGGAAATTCTTTCTTTGAATATTCGTTTTCTAAGATTGTCATATTTTAGTCGCATAGTGTAAGACCCAGAAGTTCTAATAATTCTTATGGTCTGGGTTATCTACTGGAAAGTTACAAACTGCTGAAATCGCTGCTTCTTGTAGTTTTGCAAATCATACGGTTTCTGGGTGCTTTGGTTCATTTTAAGATTTTAACAAAGTTCTTAAGCTTTCAGAATTCTGAATTCTGGACTAGAAGGTTTAGAATATTGAATTCCTGTATACTGTAAAGCCTGTAATAGCAGGGCCCAGCACTTCTAGACTTGAGCCAATTTTTCTCGGTTCCTGTCTTGACACATTTTTAATACCTTGTATAGGAATTGAGATAATAAAGCTCAAACTTGACAGTGCGAGGGTCCTTCTATTACAGGTTTCAAAATTACCAGATCTCTTCGGCTTCATTATGAGCTTCATTTCCTAGATTTTCTAAATCCAAAGACTGTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>316 248 184 160 65 27</canonical_bands>
                <polymorphic_bands>564 184 160 65 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATATCTAGACAGACAGGTGTTC</pcr_primer_p1>
		<pcr_primer_p2>AATATGACAATCTTAGAAAACGAATA</pcr_primer_p2>
		<pcr_amplicon_size>386</pcr_amplicon_size>
		<canonical_amplicon>AAAATATCTAGACAGACAGGTGTTCGGAATTCGCTTCGAAAATACTATTAAACCTGTAATAGAAGGGCACCCTAACTTTCAACCAAATTTGAGCAAATTTTGCATGATCCCTGTCAAAGATATGAAAATCTTGTCAACTAATAAAATGTTAGTCATAACATCAGAAGTGTTCTGTCAGTTGACGCATTTTCGATATCTTTTACAGAAACTGAAATAATTGAGCTCAAACTGGAGTATGTGGGGCCTTTCTATTACAGGTTTTCCTGTAAGATTCGAAACTTTTGAAAATCGAGATATCCTGAAAGATACTTTTTTCCGCCTTTCTAGTTTTCAAGGTCACATGGAAATTCTTTCTTTGAATATTCGTTTTCTAAGATTGTCATATT</canonical_amplicon>
		<polymorphic_amplicon>AAAATATCTAGACAGACAGGTGTTCGGAATTCGCTTCGAAAATACTATTAAACCTGTAATAGAAGGGCACCCTAACTTTCAACCAAATTTGAGCAAATTTTGCATGATCCCTGTCAAAGATATGAAAATCTTGTCAACTAATAAAATGTTAGTCATAACATCAGAAGTGTTCTGTCAGTTGACGCATTTTCGATATCTTTTACAGAAACTGAAATAATTGAGCTCAAACTGGAGTATGTGGGGCCTTTCTATTACAGGTTTTCCTGTAAGATTCGAAACTTTTGAAAATCGAGATATCCTGAAAGATACTTTTTTCCGCCTTTYTAGTTTTCAAGGTCACATGGAAATTCTTTCTTTGAATATTCGTTTTCTAAGATTGTCATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15081</snp_id>
        <super_contig>c008401196.Contig2</super_contig>
        <contig_pos>53503</contig_pos>
        <strand>+</strand>
        <context>ATCACCAAAG[C/T]TTATGTGGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCGTGCCTTCAGAAGTTGTACACCCTGGCGAAGGCCGCCATCACCAAAG</left_flank>
        <right_flank>TTATGTGGATAAGATTTGCAAGAAATTCGTGAAGCAGGTGGGCTGAATTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGCACTGATAATCGTGCTGCCATGGCAACTAAATGTGTTAACACTTTGGGTATCACATTTTACACAGCCGCTCAGCTCAACACCATTTTTGCATGCGCTGACCCACAGGTTTATGCCACGCCCACGAACACAACGGCAATGATTTCAGGTTATGAGTATTTGAATTTTTGAAAAATTATAAATGTTTCAGTTGCCAAGGACTGTATCATCAACAACTCGGGATCCAAAGCTATCGCTGCTCTATCTTTATACGCTAATATCAACAGTTGTCTCAGCCCAGATGATATTCTTACCTTGGCCACAGAATGGGCAACCCCGCTAACAAAACTAACAAAGACTTTGACGAATAAGGTTAGAGATCTGAGAATTTGAGAAGAAAACGAACTTCAAAAATTTCAGTGCCTCAAAAAAATCAAGACTTGCAAGGCAGCTGGTACCGCTCAAGAAGCGTGCCTTCAGAAGTTGTACACCCTGGCGAAGGCCGCCATCACCAAAGTTTATGTGGATAAGATTTGCAAGAAATTCGTGAAGCAGGTGGGCTGAATTGGTACATTGGATTCTAGAAATATCGAAATTTGAAATTTCAGCGAGTCACAGTTAGCAAGCTTTTCAGTTTTCTATACCATAAAACCTGTAATTGGAGGGTCCTCTGGCTTTTAACTTTAAGTAAGGCCGTACGAAACGCGGCCGCGGCCGGCCGCGGCCGAGACCGTGAGTAGGTTGCCGTGGACCAATCTGACCGTCCATTCGAAAATAAGCTCAGGTACCCAGAAACTACTAGGGTCACTAGGCCGCCGTACCCTACCTTTCTCAGAATGCCGCGGCTGTCCGTGGCACAGCCTTGACTTTAAGCAAATTTTACTCGAATCCCAAGTTATAAAAAAGTGGACAGATAAAATGTTAACCTTAATCCCACAAACAATTTATTAGTTGACACATTTTGGATAGCTTGCACAGGAATTGAGGTAATTGAGCTCGAACTTGACAGTATGGGGGC</canonical>
            <polymorphic>ATTTGCACTGATAATCGTGCTGCCATGGCAACTAAATGTGTTAACACTTTGGGTATCACATTTTACACAGCCGCTCAGCTCAACACCATTTTTGCATGCGCTGACCCACAGGTTTATGCCACGCCCACGAACACAACGGCAATGATTTCAGGTTATGAGTATTTGAATTTTTGAAAAATTATAAATGTTTCAGTTGCCAAGGACTGTATCATCAACAACTCGGGATCCAAAGCTATCGCTGCTCTATCTTTATACGCTAATATCAACAGTTGTCTCAGCCCAGATGATATTCTTACCTTGGCCACAGAATGGGCAACCCCGCTAACAAAACTAACAAAGACTTTGACGAATAAGGTTAGAGATCTGAGAATTTGAGAAGAAAACGAACTTCAAAAATTTCAGTGCCTCAAAAAAATCAAGACTTGCAAGGCAGCTGGTACCGCTCAAGAAGCGTGCCTTCAGAAGTTGTACACCCTGGCGAAGGCCGCCATCACCAAAGYTTATGTGGATAAGATTTGCAAGAAATTCGTGAAGCAGGTGGGCTGAATTGGTACATTGGATTCTAGAAATATCGAAATTTGAAATTTCAGCGAGTCACAGTTAGCAAGCTTTTCAGTTTTCTATACCATAAAACCTGTAATTGGAGGGTCCTCTGGCTTTTAACTTTAAGTAAGGCCGTACGAAACGCGGCCGCGGCCGGCCGCGGCCGAGACCGTGAGTAGGTTGCCGTGGACCAATCTGACCGTCCATTCGAAAATAAGCTCAGGTACCCAGAAACTACTAGGGTCACTAGGCCGCCGTACCCTACCTTTCTCAGAATGCCGCGGCTGTCCGTGGCACAGCCTTGACTTTAAGCAAATTTTACTCGAATCCCAAGTTATAAAAAAGTGGACAGATAAAATGTTAACCTTAATCCCACAAACAATTTATTAGTTGACACATTTTGGATAGCTTGCACAGGAATTGAGGTAATTGAGCTCGAACTTGACAGTATGGGGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCTAACAAAACTAACAAAGACT</pcr_primer_p1>
		<pcr_primer_p2>TCTAGAATCCAATGTACCAATTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGCTAACAAAACTAACAAAGACTTTGACGAATAAGGTTAGAGATCTGAGAATTTGAGAAGAAAACGAACTTCAAAAATTTCAGTGCCTCAAAAAAATCAAGACTTGCAAGGCAGCTGGTACCGCTCAAGAAGCGTGCCTTCAGAAGTTGTACACCCTGGCGAAGGCCGCCATCACCAAAGTTTATGTGGATAAGATTTGCAAGAAATTCGTGAAGCAGGTGGGCTGAATTGGTACATTGGATTCTAGA</canonical_amplicon>
		<polymorphic_amplicon>CGCTAACAAAACTAACAAAGACTTTGACGAATAAGGTTAGAGATCTGAGAATTTGAGAAGAAAACGAACTTCAAAAATTTCAGTGCCTCAAAAAAATCAAGACTTGCAAGGCAGCTGGTACCGCTCAAGAAGCGTGCCTTCAGAAGTTGTACACCCTGGCGAAGGCCGCCATCACCAAAGYTTATGTGGATAAGATTTGCAAGAAATTCGTGAAGCAGGTGGGCTGAATTGGTACATTGGATTCTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15082</snp_id>
        <super_contig>c008401196.Contig2</super_contig>
        <contig_pos>53185</contig_pos>
        <strand>+</strand>
        <context>TGAAAAATTA[A/T]AAATGTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CACAACGGCAATGATTTCAGGTTATGAGTATTTGAATTTTTGAAAAATTA</left_flank>
        <right_flank>AAATGTTTCAGTTGCCAAGGACTGTATCATCAACAACTCGGGATCCAAAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTAAAGTTGAGTGGGCTTCTGTTAGAGGTAACTCTGAAAACAATTGTAACCCCTCCGGATCAAAAACCACAATTTTTACAAATGCTTTTTGAACGCGAAGTTTGTTTCGGTCATCAAAACTTTCCACTACTAACATCACGGTGCATATTACGGATAATCCGCCAAAAAAGGGGCGGAGCTCTGTTCTTGATGTATGAAACATCTCTGAAAACGGTATATAAATTATCAAACCAATTTTTTTCCTCTGCATCCAGGAAAGTTCCAAAATGAGATCCCATTTGACAATTGCTACCGTATCATTGCTCATCTCAGTCGTCATTTGCACTGATAATCGTGCTGCCATGGCAACTAAATGTGTTAACACTTTGGGTATCACATTTTACACAGCCGCTCAGCTCAACACCATTTTTGCATGCGCTGACCCACAGGTTTATGCCACGCCCACGAACACAACGGCAATGATTTCAGGTTATGAGTATTTGAATTTTTGAAAAATTATAAATGTTTCAGTTGCCAAGGACTGTATCATCAACAACTCGGGATCCAAAGCTATCGCTGCTCTATCTTTATACGCTAATATCAACAGTTGTCTCAGCCCAGATGATATTCTTACCTTGGCCACAGAATGGGCAACCCCGCTAACAAAACTAACAAAGACTTTGACGAATAAGGTTAGAGATCTGAGAATTTGAGAAGAAAACGAACTTCAAAAATTTCAGTGCCTCAAAAAAATCAAGACTTGCAAGGCAGCTGGTACCGCTCAAGAAGCGTGCCTTCAGAAGTTGTACACCCTGGCGAAGGCCGCCATCACCAAAGTTTATGTGGATAAGATTTGCAAGAAATTCGTGAAGCAGGTGGGCTGAATTGGTACATTGGATTCTAGAAATATCGAAATTTGAAATTTCAGCGAGTCACAGTTAGCAAGCTTTTCAGTTTTCTATACCATAAAACCTGTAATTGGAGGGTCCTCTGGCTTTTAACTTTAAGTAAGGCCGTACG</canonical>
            <polymorphic>CTTAAAGTTGAGTGGGCTTCTGTTAGAGGTAACTCTGAAAACAATTGTAACCCCTCCGGATCAAAAACCACAATTTTTACAAATGCTTTTTGAACGCGAAGTTTGTTTCGGTCATCAAAACTTTCCACTACTAACATCACGGTGCATATTACGGATAATCCGCCAAAAAAGGGGCGGAGCTCTGTTCTTGATGTATGAAACATCTCTGAAAACGGTATATAAATTATCAAACCAATTTTTTTCCTCTGCATCCAGGAAAGTTCCAAAATGAGATCCCATTTGACAATTGCTACCGTATCATTGCTCATCTCAGTCGTCATTTGCACTGATAATCGTGCTGCCATGGCAACTAAATGTGTTAACACTTTGGGTATCACATTTTACACAGCCGCTCAGCTCAACACCATTTTTGCATGCGCTGACCCACAGGTTTATGCCACGCCCACGAACACAACGGCAATGATTTCAGGTTATGAGTATTTGAATTTTTGAAAAATTAWAAATGTTTCAGTTGCCAAGGACTGTATCATCAACAACTCGGGATCCAAAGCTATCGCTGCTCTATCTTTATACGCTAATATCAACAGTTGTCTCAGCCCAGATGATATTCTTACCTTGGCCACAGAATGGGCAACCCCGCTAACAAAACTAACAAAGACTTTGACGAATAAGGTTAGAGATCTGAGAATTTGAGAAGAAAACGAACTTCAAAAATTTCAGTGCCTCAAAAAAATCAAGACTTGCAAGGCAGCTGGTACCGCTCAAGAAGCGTGCCTTCAGAAGTTGTACACCCTGGCGAAGGCCGCCATCACCAAAGTTTATGTGGATAAGATTTGCAAGAAATTCGTGAAGCAGGTGGGCTGAATTGGTACATTGGATTCTAGAAATATCGAAATTTGAAATTTCAGCGAGTCACAGTTAGCAAGCTTTTCAGTTTTCTATACCATAAAACCTGTAATTGGAGGGTCCTCTGGCTTTTAACTTTAAGTAAGGCCGTACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACACTTTGGGTATCACATTTTA</pcr_primer_p1>
		<pcr_primer_p2>GAATATCATCTGGGCTGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACACTTTGGGTATCACATTTTACACAGCCGCTCAGCTCAACACCATTTTTGCATGCGCTGACCCACAGGTTTATGCCACGCCCACGAACACAACGGCAATGATTTCAGGTTATGAGTATTTGAATTTTTGAAAAATTATAAATGTTTCAGTTGCCAAGGACTGTATCATCAACAACTCGGGATCCAAAGCTATCGCTGCTCTATCTTTATACGCTAATATCAACAGTTGTCTCAGCCCAGATGATATTC</canonical_amplicon>
		<polymorphic_amplicon>AACACTTTGGGTATCACATTTTACACAGCCGCTCAGCTCAACACCATTTTTGCATGCGCTGACCCACAGGTTTATGCCACGCCCACGAACACAACGGCAATGATTTCAGGTTATGAGTATTTGAATTTTTGAAAAATTAWAAATGTTTCAGTTGCCAAGGACTGTATCATCAACAACTCGGGATCCAAAGCTATCGCTGCTCTATCTTTATACGCTAATATCAACAGTTGTCTCAGCCCAGATGATATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15083</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>13042</contig_pos>
        <strand>+</strand>
        <context>TCAATTTTCA[A/T]TGTGATTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTGGAACTCAAGCAGTCATTCAATCTCTGAATATTTTATCAATTTTCA</left_flank>
        <right_flank>TGTGATTTTTGTATTGTATGCTGGAATGGATAATATCACAGCCGTCGCAA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGGCATACTCTGGATATCATCTTAAAGTGGAGAGACCTGTAAACGAGGACCATCAATTGGAGAAGTTCCAAGAAGTTTGTTTTTCACAGACTTTAAAGTTTTATTGTGGAAGTATTTCAGGGAGAAACAGTGGTTGAGAAAAAGGAAGACACATGGAGAAACGCGCTTCAAGTGTCTTGGCAAGTTGCCAAAGAACCTAGATTCATCTGTCTCGTTGGTGCCCAATTTTTCCGAATTCTTCGATTCATGGCAAATGAAAACTTCTTGATTGTTTTCACCGAGAGTCTTCTAGTCAATAATGGATTCTTCGAGAAAAATTCCGGAACTTTGGGACTCTTTTATATTCTTGCGAGATCTTGTGGAAGCGTAAGTCTGGGCTGGTTTGGAGTTCAAAATGAATAAATATTTTCAGATTCTGTTCCTTGTACTATGGGCACCAACCAATCGTTTTGGAACTCAAGCAGTCATTCAATCTCTGAATATTTTATCAATTTTCATTGTGATTTTTGTATTGTATGCTGGAATGGATAATATCACAGCCGTCGCAATTTTCATTATTTTGGAAAAGTAAGTTACCGTAAAACTCTCTAATAGAAGGCCGCCCTATACTAGCACTTTGAACTCATTTACCTCAATCGCTATAAGAGATAACAGAAATCTGTCAACTGATAAAATTTCTGTCATAATATCACCAATATTTTATTTGCTGGCAACATTTTTGATATTTCTTCTAGGAGCCGAGATCATTGAGCTCAAATTTGACAGTGTAAGGGTCCTTCTGGAACAGGTTTTACGGTTACTGTGAACTTCACCAAATATGGATATACTGATTTTTCAGTGCAATTTCCCGCTGTGGATGGCAAGGATTCTATATTGTGGTTGCTGGAGAAGTCGTTGACACTGATATGAAACAGAATAACAGGAAGTGAGTTCACATCCAAAACCTGCTACATAATTGAGCCTCTACTTTTTTTCAGAACTCCCTTCTCCACAATCAT</canonical>
            <polymorphic>CATGGCATACTCTGGATATCATCTTAAAGTGGAGAGACCTGTAAACGAGGACCATCAATTGGAGAAGTTCCAAGAAGTTTGTTTTTCACAGACTTTAAAGTTTTATTGTGGAAGTATTTCAGGGAGAAACAGTGGTTGAGAAAAAGGAAGACACATGGAGAAACGCGCTTCAAGTGTCTTGGCAAGTTGCCAAAGAACCTAGATTCATCTGTCTCGTTGGTGCCCAATTTTTCCGAATTCTTCGATTCATGGCAAATGAAAACTTCTTGATTGTTTTCACCGAGAGTCTTCTAGTCAATAATGGATTCTTCGAGAAAAATTCCGGAACTTTGGGACTCTTTTATATTCTTGCGAGATCTTGTGGAAGCGTAAGTCTGGGCTGGTTTGGAGTTCAAAATGAATAAATATTTTCAGATTCTGTTCCTTGTACTATGGGCACCAACCAATCGTTTTGGAACTCAAGCAGTCATTCAATCTCTGAATATTTTATCAATTTTCAWTGTGATTTTTGTATTGTATGCTGGAATGGATAATATCACAGCCGTCGCAATTTTCATTATTTTGGAAAAGTAAGTTACCGTAAAACTCTCTAATAGAAGGCCGCCCTATACTAGCACTTTGAACTCATTTACCTCAATCGCTATAAGAGATAACAGAAATCTGTCAACTGATAAAATTTCTGTCATAATATCACCAATATTTTATTTGCTGGCAACATTTTTGATATTTCTTCTAGGAGCCGAGATCATTGAGCTCAAATTTGACAGTGTAAGGGTCCTTCTGGAACAGGTTTTACGGTTACTGTGAACTTCACCAAATATGGATATACTGATTTTTCAGTGCAATTTCCCGCTGTGGATGGCAAGGATTCTATATTGTGGTTGCTGGAGAAGTCGTTGACACTGATATGAAACAGAATAACAGGAAGTGAGTTCACATCCAAAACCTGCTACATAATTGAGCCTCTACTTTTTTTCAGAACTCCCTTCTCCACAATCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTTTGGGACTCTTTTATATTC</pcr_primer_p1>
		<pcr_primer_p2>CTTTTCCAAAATAATGAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAACTTTGGGACTCTTTTATATTCTTGCGAGATCTTGTGGAAGCGTAAGTCTGGGCTGGTTTGGAGTTCAAAATGAATAAATATTTTCAGATTCTGTTCCTTGTACTATGGGCACCAACCAATCGTTTTGGAACTCAAGCAGTCATTCAATCTCTGAATATTTTATCAATTTTCATTGTGATTTTTGTATTGTATGCTGGAATGGATAATATCACAGCCGTCGCAATTTTCATTATTTTGGAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GAACTTTGGGACTCTTTTATATTCTTGCGAGATCTTGTGGAAGCGTAAGTCTGGGCTGGTTTGGAGTTCAAAATGAATAAATATTTTCAGATTCTGTTCCTTGTACTATGGGCACCAACCAATCGTTTTGGAACTCAAGCAGTCATTCAATCTCTGAATATTTTATCAATTTTCAWTGTGATTTTTGTATTGTATGCTGGAATGGATAATATCACAGCCGTCGCAATTTTCATTATTTTGGAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15084</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>17682</contig_pos>
        <strand>+</strand>
        <context>GAACTTTGAG[C/T]AAGATTCTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATAAGACTTCTGATTCTGCCGCGTATTTCTGAAGTTTTTGAACTTTGAG</left_flank>
        <right_flank>AAGATTCTTGAAGTGCCTTTCTTTGTTATACAGGGTCTCGCATGATTACC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTTTACAAAATCAGAAAACTGATTAACTGATTAGGGTTGAGCATAACCGAGGAATAGGGAAACCGTTAAACGGAAGACCGGGATTTTTTAAAAAGAAAGTAGAAACGAGGAATATTACTTTAAACGTTCCAGGAGGCGTTCAGGAATTCACGAAAATTGTAGCATTTTCAGAGCTTTTCAAAAAATGTTTTAGTTCAACTGAGGACTGTTAGAGGGTTTAAAAATAAGAATTGCGTAAAAATAGAGATACAGTTCCGGTTTACCGTAATCTACAGTGTATTCTACCAGTCCCAGATGACGTTTCTGAAGAAAACAAAACGAAAATGCGGTGAGGCTAAAAAAGTGAGTATTCGAGAAGAGGATCAGCTGACCTTCGAGCGTTTTCAGCTGCTTCGCGGGTTGCTGATTCGAGAATTGATTGAAGATGGACTAGTTGTTCTCGCAGTGATAAGACTTCTGATTCTGCCGCGTATTTCTGAAGTTTTTGAACTTTGAGCAAGATTCTTGAAGTGCCTTTCTTTGTTATACAGGGTCTCGCATGATTACCAGGACTCAAGTTTGTACTGCTATAAAACTTGAGTAGAGTGTTGTACTGAGCTCAAATTTGAAATGCAAAAACTCAAAAAATTTATCAGTAAACTGACCAAGTTTCAAATTGTTTGATCAACTTTGAGCTGAGTTATCGCTTGTCAAAGTTGCTACATCTCATAAAAATAACAAGAAGCATTACGCCGCTCATGTTTGAATATAACAAAGCGAGACTTGAGGAACCGCTTTGGAAATTTCAGTAGCTTTGATTCAGGCGTAAAATTATATTTCTACTAATTTTCGTGCTTCCAAGATACTTGTGTCTAAAGATATGCCAGCTTTTATCAAAATTGCGCCACCCAATCATAGAATGACCGCAGAACTTTGGGTCCATATATCTCATTTCCTGTGAAAGATATCAAAAAGCGGTCAACTGACAAAATATTTTTGATATTATGATAAAACGTTT</canonical>
            <polymorphic>CATTTTTACAAAATCAGAAAACTGATTAACTGATTAGGGTTGAGCATAACCGAGGAATAGGGAAACCGTTAAACGGAAGACCGGGATTTTTTAAAAAGAAAGTAGAAACGAGGAATATTACTTTAAACGTTCCAGGAGGCGTTCAGGAATTCACGAAAATTGTAGCATTTTCAGAGCTTTTCAAAAAATGTTTTAGTTCAACTGAGGACTGTTAGAGGGTTTAAAAATAAGAATTGCGTAAAAATAGAGATACAGTTCCGGTTTACCGTAATCTACAGTGTATTCTACCAGTCCCAGATGACGTTTCTGAAGAAAACAAAACGAAAATGCGGTGAGGCTAAAAAAGTGAGTATTCGAGAAGAGGATCAGCTGACCTTCGAGCGTTTTCAGCTGCTTCGCGGGTTGCTGATTCGAGAATTGATTGAAGATGGACTAGTTGTTCTCGCAGTGATAAGACTTCTGATTCTGCCGCGTATTTCTGAAGTTTTTGAACTTTGAGYAAGATTCTTGAAGTGCCTTTCTTTGTTATACAGGGTCTCGCATGATTACCAGGACTCAAGTTTGTACTGCTATAAAACTTGAGTAGAGTGTTGTACTGAGCTCAAATTTGAAATGCAAAAACTCAAAAAATTTATCAGTAAACTGACCAAGTTTCAAATTGTTTGATCAACTTTGAGCTGAGTTATCGCTTGTCAAAGTTGCTACATCTCATAAAAATAACAAGAAGCATTACGCCGCTCATGTTTGAATATAACAAAGCGAGACTTGAGGAACCGCTTTGGAAATTTCAGTAGCTTTGATTCAGGCGTAAAATTATATTTCTACTAATTTTCGTGCTTCCAAGATACTTGTGTCTAAAGATATGCCAGCTTTTATCAAAATTGCGCCACCCAATCATAGAATGACCGCAGAACTTTGGGTCCATATATCTCATTTCCTGTGAAAGATATCAAAAAGCGGTCAACTGACAAAATATTTTTGATATTATGATAAAACGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGCAGTGATAAGACTTCTG</pcr_primer_p1>
		<pcr_primer_p2>AGGATTGGGATAAAGTTGTAAGT</pcr_primer_p2>
		<pcr_amplicon_size>787</pcr_amplicon_size>
		<canonical_amplicon>CTCGCAGTGATAAGACTTCTGATTCTGCCGCGTATTTCTGAAGTTTTTGAACTTTGAGCAAGATTCTTGAAGTGCCTTTCT</canonical_amplicon>
		<polymorphic_amplicon>CTCGCAGTGATAAGACTTCTGATTCTGCCGCGTATTTCTGAAGTTTTTGAACTTTGAGYAAGATTCTTGAAGTGCCTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15085</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>17512</contig_pos>
        <strand>+</strand>
        <context>AACGAAAATG[C/T]GGTGAGGCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTATTCTACCAGTCCCAGATGACGTTTCTGAAGAAAACAAAACGAAAATG</left_flank>
        <right_flank>GGTGAGGCTAAAAAAGTGAGTATTCGAGAAGAGGATCAGCTGACCTTCGA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAGCATCGGAGAGACGACGGATCTCATGTCGTTCGTGCTCCAATTCTGACACTCTGAAACTTGATTCAAGTCAAACGTTCTATGCTTTTTCCTGTTCTCCGGTTTCCTCTTATTTCTCCGTCGAAAATATTTTTTTTCAAAAATTTTCTAAAATCATTTATTTAAAAACATTTTTACAAAATCAGAAAACTGATTAACTGATTAGGGTTGAGCATAACCGAGGAATAGGGAAACCGTTAAACGGAAGACCGGGATTTTTTAAAAAGAAAGTAGAAACGAGGAATATTACTTTAAACGTTCCAGGAGGCGTTCAGGAATTCACGAAAATTGTAGCATTTTCAGAGCTTTTCAAAAAATGTTTTAGTTCAACTGAGGACTGTTAGAGGGTTTAAAAATAAGAATTGCGTAAAAATAGAGATACAGTTCCGGTTTACCGTAATCTACAGTGTATTCTACCAGTCCCAGATGACGTTTCTGAAGAAAACAAAACGAAAATGCGGTGAGGCTAAAAAAGTGAGTATTCGAGAAGAGGATCAGCTGACCTTCGAGCGTTTTCAGCTGCTTCGCGGGTTGCTGATTCGAGAATTGATTGAAGATGGACTAGTTGTTCTCGCAGTGATAAGACTTCTGATTCTGCCGCGTATTTCTGAAGTTTTTGAACTTTGAGCAAGATTCTTGAAGTGCCTTTCTTTGTTATACAGGGTCTCGCATGATTACCAGGACTCAAGTTTGTACTGCTATAAAACTTGAGTAGAGTGTTGTACTGAGCTCAAATTTGAAATGCAAAAACTCAAAAAATTTATCAGTAAACTGACCAAGTTTCAAATTGTTTGATCAACTTTGAGCTGAGTTATCGCTTGTCAAAGTTGCTACATCTCATAAAAATAACAAGAAGCATTACGCCGCTCATGTTTGAATATAACAAAGCGAGACTTGAGGAACCGCTTTGGAAATTTCAGTAGCTTTGATTCAGGCGTAAAATTATATTTCTACTAATT</canonical>
            <polymorphic>AACAGCATCGGAGAGACGACGGATCTCATGTCGTTCGTGCTCCAATTCTGACACTCTGAAACTTGATTCAAGTCAAACGTTCTATGCTTTTTCCTGTTCTCCGGTTTCCTCTTATTTCTCCGTCGAAAATATTTTTTTTCAAAAATTTTCTAAAATCATTTATTTAAAAACATTTTTACAAAATCAGAAAACTGATTAACTGATTAGGGTTGAGCATAACCGAGGAATAGGGAAACCGTTAAACGGAAGACCGGGATTTTTTAAAAAGAAAGTAGAAACGAGGAATATTACTTTAAACGTTCCAGGAGGCGTTCAGGAATTCACGAAAATTGTAGCATTTTCAGAGCTTTTCAAAAAATGTTTTAGTTCAACTGAGGACTGTTAGAGGGTTTAAAAATAAGAATTGCGTAAAAATAGAGATACAGTTCCGGTTTACCGTAATCTACAGTGTATTCTACCAGTCCCAGATGACGTTTCTGAAGAAAACAAAACGAAAATGYGGTGAGGCTAAAAAAGTGAGTATTCGAGAAGAGGATCAGCTGACCTTCGAGCGTTTTCAGCTGCTTCGCGGGTTGCTGATTCGAGAATTGATTGAAGATGGACTAGTTGTTCTCGCAGTGATAAGACTTCTGATTCTGCCGCGTATTTCTGAAGTTTTTGAACTTTGAGCAAGATTCTTGAAGTGCCTTTCTTTGTTATACAGGGTCTCGCATGATTACCAGGACTCAAGTTTGTACTGCTATAAAACTTGAGTAGAGTGTTGTACTGAGCTCAAATTTGAAATGCAAAAACTCAAAAAATTTATCAGTAAACTGACCAAGTTTCAAATTGTTTGATCAACTTTGAGCTGAGTTATCGCTTGTCAAAGTTGCTACATCTCATAAAAATAACAAGAAGCATTACGCCGCTCATGTTTGAATATAACAAAGCGAGACTTGAGGAACCGCTTTGGAAATTTCAGTAGCTTTGATTCAGGCGTAAAATTATATTTCTACTAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGTTTTAGTTCAACTGAGGA</pcr_primer_p1>
		<pcr_primer_p2>TAGTCCATCTTCAATCAATTCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATGTTTTAGTTCAACTGAGGACTGTTAGAGGGTTTAAAAATAAGAATTGCGTAAAAATAGAGATACAGTTCCGGTTTACCGTAATCTACAGTGTATTCTACCAGTCCCAGATGACGTTTCTGAAGAAAACAAAACGAAAATGCGGTGAGGCTAAAAAAGTGAGTATTCGAGAAGAGGATCAGCTGACCTTCGAGCGTTTTCAGCTGCTTCGCGGGTTGCTGATTCGAGAATTGATTGAAGATGGACTA</canonical_amplicon>
		<polymorphic_amplicon>AAATGTTTTAGTTCAACTGAGGACTGTTAGAGGGTTTAAAAATAAGAATTGCGTAAAAATAGAGATACAGTTCCGGTTTACCGTAATCTACAGTGTATTCTACCAGTCCCAGATGACGTTTCTGAAGAAAACAAAACGAAAATGYGGTGAGGCTAAAAAAGTGAGTATTCGAGAAGAGGATCAGCTGACCTTCGAGCGTTTTCAGCTGCTTCGCGGGTTGCTGATTCGAGAATTGATTGAAGATGGACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15086</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>17435</contig_pos>
        <strand>+</strand>
        <context>AATAGAGATA[C/T]AGTTCCGGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAGGACTGTTAGAGGGTTTAAAAATAAGAATTGCGTAAAAATAGAGATA</left_flank>
        <right_flank>AGTTCCGGTTTACCGTAATCTACAGTGTATTCTACCAGTCCCAGATGACG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCAGTGAAATTAAAAACGAATTGATGACGATAGACGGTGATGGACCGGACTGCCGCTCACCTGAGTTTTAATATGAACAGCATCGGAGAGACGACGGATCTCATGTCGTTCGTGCTCCAATTCTGACACTCTGAAACTTGATTCAAGTCAAACGTTCTATGCTTTTTCCTGTTCTCCGGTTTCCTCTTATTTCTCCGTCGAAAATATTTTTTTTCAAAAATTTTCTAAAATCATTTATTTAAAAACATTTTTACAAAATCAGAAAACTGATTAACTGATTAGGGTTGAGCATAACCGAGGAATAGGGAAACCGTTAAACGGAAGACCGGGATTTTTTAAAAAGAAAGTAGAAACGAGGAATATTACTTTAAACGTTCCAGGAGGCGTTCAGGAATTCACGAAAATTGTAGCATTTTCAGAGCTTTTCAAAAAATGTTTTAGTTCAACTGAGGACTGTTAGAGGGTTTAAAAATAAGAATTGCGTAAAAATAGAGATACAGTTCCGGTTTACCGTAATCTACAGTGTATTCTACCAGTCCCAGATGACGTTTCTGAAGAAAACAAAACGAAAATGCGGTGAGGCTAAAAAAGTGAGTATTCGAGAAGAGGATCAGCTGACCTTCGAGCGTTTTCAGCTGCTTCGCGGGTTGCTGATTCGAGAATTGATTGAAGATGGACTAGTTGTTCTCGCAGTGATAAGACTTCTGATTCTGCCGCGTATTTCTGAAGTTTTTGAACTTTGAGCAAGATTCTTGAAGTGCCTTTCTTTGTTATACAGGGTCTCGCATGATTACCAGGACTCAAGTTTGTACTGCTATAAAACTTGAGTAGAGTGTTGTACTGAGCTCAAATTTGAAATGCAAAAACTCAAAAAATTTATCAGTAAACTGACCAAGTTTCAAATTGTTTGATCAACTTTGAGCTGAGTTATCGCTTGTCAAAGTTGCTACATCTCATAAAAATAACAAGAAGCATTACGCCGCTCATGTTTGAATATA</canonical>
            <polymorphic>AATCAGTGAAATTAAAAACGAATTGATGACGATAGACGGTGATGGACCGGACTGCCGCTCACCTGAGTTTTAATATGAACAGCATCGGAGAGACGACGGATCTCATGTCGTTCGTGCTCCAATTCTGACACTCTGAAACTTGATTCAAGTCAAACGTTCTATGCTTTTTCCTGTTCTCCGGTTTCCTCTTATTTCTCCGTCGAAAATATTTTTTTTCAAAAATTTTCTAAAATCATTTATTTAAAAACATTTTTACAAAATCAGAAAACTGATTAACTGATTAGGGTTGAGCATAACCGAGGAATAGGGAAACCGTTAAACGGAAGACCGGGATTTTTTAAAAAGAAAGTAGAAACGAGGAATATTACTTTAAACGTTCCAGGAGGCGTTCAGGAATTCACGAAAATTGTAGCATTTTCAGAGCTTTTCAAAAAATGTTTTAGTTCAACTGAGGACTGTTAGAGGGTTTAAAAATAAGAATTGCGTAAAAATAGAGATAYAGTTCCGGTTTACCGTAATCTACAGTGTATTCTACCAGTCCCAGATGACGTTTCTGAAGAAAACAAAACGAAAATGCGGTGAGGCTAAAAAAGTGAGTATTCGAGAAGAGGATCAGCTGACCTTCGAGCGTTTTCAGCTGCTTCGCGGGTTGCTGATTCGAGAATTGATTGAAGATGGACTAGTTGTTCTCGCAGTGATAAGACTTCTGATTCTGCCGCGTATTTCTGAAGTTTTTGAACTTTGAGCAAGATTCTTGAAGTGCCTTTCTTTGTTATACAGGGTCTCGCATGATTACCAGGACTCAAGTTTGTACTGCTATAAAACTTGAGTAGAGTGTTGTACTGAGCTCAAATTTGAAATGCAAAAACTCAAAAAATTTATCAGTAAACTGACCAAGTTTCAAATTGTTTGATCAACTTTGAGCTGAGTTATCGCTTGTCAAAGTTGCTACATCTCATAAAAATAACAAGAAGCATTACGCCGCTCATGTTTGAATATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>476 276 143 44 38 13 10</canonical_bands>
                <polymorphic_bands>476 276 143 57 38 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGTTTTAGTTCAACTGAGGA</pcr_primer_p1>
		<pcr_primer_p2>TAGTCCATCTTCAATCAATTCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATGTTTTAGTTCAACTGAGGACTGTTAGAGGGTTTAAAAATAAGAATTGCGTAAAAATAGAGATACAGTTCCGGTTTACCGTAATCTACAGTGTATTCTACCAGTCCCAGATGACGTTTCTGAAGAAAACAAAACGAAAATGCGGTGAGGCTAAAAAAGTGAGTATTCGAGAAGAGGATCAGCTGACCTTCGAGCGTTTTCAGCTGCTTCGCGGGTTGCTGATTCGAGAATTGATTGAAGATGGACTA</canonical_amplicon>
		<polymorphic_amplicon>AAATGTTTTAGTTCAACTGAGGACTGTTAGAGGGTTTAAAAATAAGAATTGCGTAAAAATAGAGATAYAGTTCCGGTTTACCGTAATCTACAGTGTATTCTACCAGTCCCAGATGACGTTTCTGAAGAAAACAAAACGAAAATGCGGTGAGGCTAAAAAAGTGAGTATTCGAGAAGAGGATCAGCTGACCTTCGAGCGTTTTCAGCTGCTTCGCGGGTTGCTGATTCGAGAATTGATTGAAGATGGACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15087</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>201938</contig_pos>
        <strand>+</strand>
        <context>GGTGTGAAGA[A/T]GTAATATAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCATTTATTTTACAATGAATAAAATGCGTAATGTAATGGGGTGTGAAGA</left_flank>
        <right_flank>GTAATATAAAACGAATAAGGCGATGGACTAACGGTGAACGAGACGGCCAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTAATAAAATTTTAAATATTGGAAATTTTAATGGTTTTTCAGGTCTACGTTCTTGCCTCTGTCGCTGATTATCGACCGAATCAAGAAGAAACTGAGTTAGAAGAAACCGAAGAAGTCAGCGAAAACGCATTGAATCATCGAGCATTCGTTGTATTCCCCAAAGAACTTCACTGTTCAGAAGCCAAGGAATATTCAGATGATGAAGAAGGCGTGTCGTTGTATTGGATTCTTTCTGGATTACAAAAAATCAAGAAAGAGAATGGATTGTCGTGTGAAGTGCATTTGAGACATGTCGATGATTTGAAGAAGACCATTGAGAAGAAGAGTGTTGATATTGGACATATTTTGATTACTAGAATTAAATGTCTACAGTAATTTTTTGATTTTTTCTGGGTTTTCTCTGTAATTCCATAATTTCTTCTTGATCTCAATAAATTGAAACGAAAATTCCATTTATTTTACAATGAATAAAATGCGTAATGTAATGGGGTGTGAAGATGTAATATAAAACGAATAAGGCGATGGACTAACGGTGAACGAGACGGCCATCGTGAATGGAACAGAGACAAATCTAGGCAAAAAATAACGGAGAAAGATTTTTACGCAGAGAGAAAACTATTGGAATTTTGAGATGCTCATTTCAGGAGATGGTAGTGTAAATATCTGAAAATCTCGTTTTTTTTTGGGGCGGTACAAGAAGTGTAGTGTATCCCCGATACCTATTAATAGAGATTTATAGAGACCTAAGCCCAACGAGGTAGGTTTGGTAGATCTATAGAGATGGAAACGGATTTGGTATGAAAGTTATAACTACCGGAAAATGCCATTGAAAAGGCAAAACGATGGGACAGATTGGACGGGGGAAAATTCGACCCATTTGAATGAACGGCGGCGGCAGAATGCGTTGAAAGTTGTAAGAAATAGAATCACTAGAAAAAACATGAAGAAAGGAAGAAAAAGAAGAGAATAGAATGGAAGAAGAAGAAGGAAATGCATAAA</canonical>
            <polymorphic>GTTAATAAAATTTTAAATATTGGAAATTTTAATGGTTTTTCAGGTCTACGTTCTTGCCTCTGTCGCTGATTATCGACCGAATCAAGAAGAAACTGAGTTAGAAGAAACCGAAGAAGTCAGCGAAAACGCATTGAATCATCGAGCATTCGTTGTATTCCCCAAAGAACTTCACTGTTCAGAAGCCAAGGAATATTCAGATGATGAAGAAGGCGTGTCGTTGTATTGGATTCTTTCTGGATTACAAAAAATCAAGAAAGAGAATGGATTGTCGTGTGAAGTGCATTTGAGACATGTCGATGATTTGAAGAAGACCATTGAGAAGAAGAGTGTTGATATTGGACATATTTTGATTACTAGAATTAAATGTCTACAGTAATTTTTTGATTTTTTCTGGGTTTTCTCTGTAATTCCATAATTTCTTCTTGATCTCAATAAATTGAAACGAAAATTCCATTTATTTTACAATGAATAAAATGCGTAATGTAATGGGGTGTGAAGAWGTAATATAAAACGAATAAGGCGATGGACTAACGGTGAACGAGACGGCCATCGTGAATGGAACAGAGACAAATCTAGGCAAAAAATAACGGAGAAAGATTTTTACGCAGAGAGAAAACTATTGGAATTTTGAGATGCTCATTTCAGGAGATGGTAGTGTAAATATCTGAAAATCTCGTTTTTTTTTGGGGCGGTACAAGAAGTGTAGTGTATCCCCGATACCTATTAATAGAGATTTATAGAGACCTAAGCCCAACGAGGTAGGTTTGGTAGATCTATAGAGATGGAAACGGATTTGGTATGAAAGTTATAACTACCGGAAAATGCCATTGAAAAGGCAAAACGATGGGACAGATTGGACGGGGGAAAATTCGACCCATTTGAATGAACGGCGGCGGCAGAATGCGTTGAAAGTTGTAAGAAATAGAATCACTAGAAAAAACATGAAGAAAGGAAGAAAAAGAAGAGAATAGAATGGAAGAAGAAGAAGGAAATGCATAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTGATATTGGACATATTTTGA</pcr_primer_p1>
		<pcr_primer_p2>CTAGATTTGTCTCTGTTCCATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTTGATATTGGACATATTTTGATTACTAGAATTAAATGTCTACAGTAATTTTTTGATTTTTTCTGGGTTTTCTCTGTAATTCCATAATTTCTTCTTGATCTCAATAAATTGAAACGAAAATTCCATTTATTTTACAATGAATAAAATGCGTAATGTAATGGGGTGTGAAGATGTAATATAAAACGAATAAGGCGATGGACTAACGGTGAACGAGACGGCCATCGTGAATGGAACAGAGACAAATCTAG</canonical_amplicon>
		<polymorphic_amplicon>TGTTGATATTGGACATATTTTGATTACTAGAATTAAATGTCTACAGTAATTTTTTGATTTTTTCTGGGTTTTCTCTGTAATTCCATAATTTCTTCTTGATCTCAATAAATTGAAACGAAAATTCCATTTATTTTACAATGAATAAAATGCGTAATGTAATGGGGTGTGAAGAWGTAATATAAAACGAATAAGGCGATGGACTAACGGTGAACGAGACGGCCATCGTGAATGGAACAGAGACAAATCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15089</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>304766</contig_pos>
        <strand></strand>
        <context>TTTCCAAACT[T/C]CAYTACAgtt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTAATTATTTTTTTTATCAGAAAGATTTTCGAAAATCTCGTTTCCAAACT</left_flank>
        <right_flank>CATTACAGTTCAATAACCAACGTTCTAGCACCTCTAAAAGCCGAGATACA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACCGCAAATTTCCGGAGAAGATTTCGGTATGCCTAATGTTAACAGAAAAAATGTTAACAAACAAACAATGAGTCGACAAATCTCGGAAATTATTTCCTTTTTTTTTGAAATCTTTTAAATTTTTTTTCTTACATATTTTCTTTCCTGGTTTTTTTTCCTGACAAGTAACAAGTTATGTAATAGTTATGTAATCAAATATAGATTCCTATTCTGACTTTCTAAACAAACATATCCTGGGGAAACTGGTTCGTAATGCTAGATTGGAATGGTCAGAGGTTAGCCACCCACCCCCATTATTATAGGTTTCAGGTTCCAGTTCAGTGTACAATGATAACTTTAGGTTTCATGTTTATATTCCCATAACCATCATCTCCTTCTTCTACCAACTACTTGACGGGCGAAGTTTTTGAATTCCTGGATTTTTGAAAATCCTTGAATTTCAAAATTTTTAATTATTTTTTTTATCAGAAAGATTTTCGAAAATCTCGTTTCCAAACTTCATTACAGTTCAATAACCAACGTTCTAGCACCTCTAAAAGCCGAGATACAGTGATTTGAAGTTTTGAAGAGACGCAGACAGTTAGAGTGTATCGTTGTCTGCGTCTCTTGCTTTCGAAAAATCTCGGCTCTCAGTGGCCCTAGAAAAGGAAAGAAGACACTTCTTCACACTTTAGATTTCATGTTCCAGCTCAGTGTACAATATGATAACTTTTCCACAAATATTTATATTCCCATAACCATTCCCTGGCTACTTGACGGGCGGGTTTCTCATGGCGAACCACTCATAATCCACTCTTCATGCATAACCGAAAAACTCCCAATCGTTTTGCTCCGTTTCTATGTAACTCGATACTGTATTTCATGTATTTTCTTCACTTATTTAATATTTGAATACGGTAATTATGACACCTAGTTGACAGAGAAATAGTGTGAGATTTGAAGAGAGCGCAGACAAAAGTGCGTGATGGTGGCTCGTTTGCCGTGTCAAGATCCTACTTT</canonical>
            <polymorphic>GACCGCAAATTTCCGGAGAAGATTTCGGTATGCCTAATGTTAACAGAAAAAATGTTAACAAACAAACAATGAGTCGACAAATCTCGGAAATTATTTCCTTTTTTTTTGAAATCTTTTAAATTTTTTTTCTTACATATTTTCTTTCCTGGTTTTTTTTCCTGACAAGTAACAAGTTATGTAATAGTTATGTAATCAAATATAGATTCCTATTCTGACTTTCTAAACAAACATATCCTGGGGAAACTGGTTCGTAATGCTAGATTGGAATGGTCAGAGGTTAGCCACCCACCCCCATTATTATAGGTTTCAGGTTCCAGTTCAGTGTACAATGATAACTTTAGGTTTCATGTTTATATTCCCATAACCATCATCTCCTTCTTCTACCAACTACTTGACGGGCGAAGTTTTTGAATTCCTGGATTTTTGAAAATCCTTGAATTTCAAAATTTTTAATTATTTTTTTTATCAGAAAGATTTTCGAAAATCTCGTTTCCAAACTYCATTACAGTTCAATAACCAACGTTCTAGCACCTCTAAAAGCCGAGATACAGTGATTTGAAGTTTTGAAGAGACGCAGACAGTTAGAGTGTATCGTTGTCTGCGTCTCTTGCTTTCGAAAAATCTCGGCTCTCAGTGGCCCTAGAAAAGGAAAGAAGACACTTCTTCACACTTTAGATTTCATGTTCCAGCTCAGTGTACAATATGATAACTTTTCCACAAATATTTATATTCCCATAACCATTCCCTGGCTACTTGACGGGCGGGTTTCTCATGGCGAACCACTCATAATCCACTCTTCATGCATAACCGAAAAACTCCCAATCGTTTTGCTCCGTTTCTATGTAACTCGATACTGTATTTCATGTATTTTCTTCACTTATTTAATATTTGAATACGGTAATTATGACACCTAGTTGACAGAGAAATAGTGTGAGATTTGAAGAGAGCGCAGACAAAAGTGCGTGATGGTGGCTCGTTTGCCGTGTCAAGATCCTACTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATTCCTGGATTTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>TGAAATCTAAAGTGTGAAGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>TGAATTCCTGGATTTTTGAAAATCCTTGAATTTCAAAATTTTTAATTATTTTTTTTATCAGAAAGATTTTCGAAAATCTCGTTTCCAAACTTCATTACAGTTCAATAACCAACGTTCTAGCACCTCTAAAAGCCGAGATACAGTGATTTGAAGTTTTGAAGAGACGCAGACAGTTAGAGTGTATCGTTGTCTGCGTCTCTTGCTTTCGAAAAATCTCGGCTCTCAGTGGCCCTAGAAAAGGAAAGAAGACACTTCTTCACACTTTAGATTTCA</canonical_amplicon>
		<polymorphic_amplicon>TGAATTCCTGGATTTTTGAAAATCCTTGAATTTCAAAATTTTTAATTATTTTTTTTATCAGAAAGATTTTCGAAAATCTCGTTTCCAAACTYCATTACAGTTCAATAACCAACGTTCTAGCACCTCTAAAAGCCGAGATACAGTGATTTGAAGTTTTGAAGAGACGCAGACAGTTAGAGTGTATCGTTGTCTGCGTCTCTTGCTTTCGAAAAATCTCGGCTCTCAGTGGCCCTAGAAAAGGAAAGAAGACACTTCTTCACACTTTAGATTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15090</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>376844</contig_pos>
        <strand></strand>
        <context>TCTGGCAGTT[G/A]CCGGACAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CCGTATTTTATGATTTCAATTTCTGTCCACAGGGACTGTTTCTGGCAGTT</left_flank>
        <right_flank>CCGGACAACAACCAGCACCCAACAATGGAGAAATCCTGATGCCAACTGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTATGAAAAAAGGGTGTGGAGCTTTCCATGGGAAAATGTTTTTGAAAACTCGAATTCGATTTAGCTTTTTTGAGCACATCTTTTGACTGATTCGAAAAAAATACGGTCTCGAAATATTTTTCACATGAGCCTCTCGAGGAGTTGAACTCGGGGGACGAGTATTGAAGGTGCGGCGCCGCTACCGACTGAGCGTCGCGGAAAAACTCTGAAAAATCTCCAGTAAAGGTGTTCCTAGTAAAATCAAAAACGTCACATAACATATTTATTCCCCCAGTAAACCCGTGACACTGATAATCTATGTTAACAGATATTCCACGCGTCGACTGCTCGTATCAGGATCTCCAGTACCACCTCCTTAGAATACAACCTGTTACTTCCCCAGCTATCCTTCGATTATGCTGGGAATAAACTTGATTTTCAAAGTCTTTGTAAGTTTTGCTCTTTTTTCCGTATTTTATGATTTCAATTTCTGTCCACAGGGACTGTTTCTGGCAGTTGCCGGACAACAACCAGCACCCAACAATGGAGAAATCCTGATGCCAACTGATGAACCATTTAACATGCTAAAAGGAGAATATCAACTCGATGTCAATGAAATGTGAGTCTTAATTTTAAATATTGTACTTTTTTAACAAGACAAACACCATGTAACTTGTAGTAGGAGTGCCCCGCACTGTCAAGTTTAAACTTGATTATCTCAATTTCTATGCAAGATATAACAATTGTGTTAACTAATAAATTGTTATCATAACATTACCAATATTTTATCAGTTGACACATTTTTTACATTTTTTTATAGGAATTAAGATAATTGAGCTCAAAGTTGACGCTCTGGATATGCTTCTATTAAGGAGATACGGTAACGTGTAATAGGAGGGCCCCACACTGTCAACTTCGAGCCAATTTATCTCAGCTCCTGTGAAAGATAACAAAAATGTGTCAACTGATAAAATATTTCTGATATTTTGACAAACAGCTTATCAGTTGAAAACTTTTTC</canonical>
            <polymorphic>AGGTATGAAAAAAGGGTGTGGAGCTTTCCATGGGAAAATGTTTTTGAAAACTCGAATTCGATTTAGCTTTTTTGAGCACATCTTTTGACTGATTCGAAAAAAATACGGTCTCGAAATATTTTTCACATGAGCCTCTCGAGGAGTTGAACTCGGGGGACGAGTATTGAAGGTGCGGCGCCGCTACCGACTGAGCGTCGCGGAAAAACTCTGAAAAATCTCCAGTAAAGGTGTTCCTAGTAAAATCAAAAACGTCACATAACATATTTATTCCCCCAGTAAACCCGTGACACTGATAATCTATGTTAACAGATATTCCACGCGTCGACTGCTCGTATCAGGATCTCCAGTACCACCTCCTTAGAATACAACCTGTTACTTCCCCAGCTATCCTTCGATTATGCTGGGAATAAACTTGATTTTCAAAGTCTTTGTAAGTTTTGCTCTTTTTTCCGTATTTTATGATTTCAATTTCTGTCCACAGGGACTGTTTCTGGCAGTTRCCGGACAACAACCAGCACCCAACAATGGAGAAATCCTGATGCCAACTGATGAACCATTTAACATGCTAAAAGGAGAATATCAACTCGATGTCAATGAAATGTGAGTCTTAATTTTAAATATTGTACTTTTTTAACAAGACAAACACCATGTAACTTGTAGTAGGAGTGCCCCGCACTGTCAAGTTTAAACTTGATTATCTCAATTTCTATGCAAGATATAACAATTGTGTTAACTAATAAATTGTTATCATAACATTACCAATATTTTATCAGTTGACACATTTTTTACATTTTTTTATAGGAATTAAGATAATTGAGCTCAAAGTTGACGCTCTGGATATGCTTCTATTAAGGAGATACGGTAACGTGTAATAGGAGGGCCCCACACTGTCAACTTCGAGCCAATTTATCTCAGCTCCTGTGAAAGATAACAAAAATGTGTCAACTGATAAAATATTTCTGATATTTTGACAAACAGCTTATCAGTTGAAAACTTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTCCTTAGAATACAACCTGTTA</pcr_primer_p1>
		<pcr_primer_p2>ATTTCATTGACATCGAGTTGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCTCCTTAGAATACAACCTGTTACTTCCCCAGCTATCCTTCGATTATGCTGGGAATAAACTTGATTTTCAAAGTCTTTGTAAGTTTTGCTCTTTTTTCCGTATTTTATGATTTCAATTTCTGTCCACAGGGACTGTTTCTGGCAGTTGCCGGACAACAACCAGCACCCAACAATGGAGAAATCCTGATGCCAACTGATGAACCATTTAACATGCTAAAAGGAGAATATCAACTCGATGTCAATGAAAT</canonical_amplicon>
		<polymorphic_amplicon>CCTCCTTAGAATACAACCTGTTACTTCCCCAGCTATCCTTCGATTATGCTGGGAATAAACTTGATTTTCAAAGTCTTTGTAAGTTTTGCTCTTTTTTCCGTATTTTATGATTTCAATTTCTGTCCACAGGGACTGTTTCTGGCAGTTRCCGGACAACAACCAGCACCCAACAATGGAGAAATCCTGATGCCAACTGATGAACCATTTAACATGCTAAAAGGAGAATATCAACTCGATGTCAATGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15091</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>376915</contig_pos>
        <strand></strand>
        <context>ACATGCTAAA[A/T]GGAGAATATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACAATGGAGAAATCCTGATGCCAACTGATGAACCATTTAACATGCTAAA</left_flank>
        <right_flank>GGAGAATATCAACTCGATGTCAATGAAATGTGAGTCTTAATTTTAAATAT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAGCACATCTTTTGACTGATTCGAAAAAAATACGGTCTCGAAATATTTTTCACATGAGCCTCTCGAGGAGTTGAACTCGGGGGACGAGTATTGAAGGTGCGGCGCCGCTACCGACTGAGCGTCGCGGAAAAACTCTGAAAAATCTCCAGTAAAGGTGTTCCTAGTAAAATCAAAAACGTCACATAACATATTTATTCCCCCAGTAAACCCGTGACACTGATAATCTATGTTAACAGATATTCCACGCGTCGACTGCTCGTATCAGGATCTCCAGTACCACCTCCTTAGAATACAACCTGTTACTTCCCCAGCTATCCTTCGATTATGCTGGGAATAAACTTGATTTTCAAAGTCTTTGTAAGTTTTGCTCTTTTTTCCGTATTTTATGATTTCAATTTCTGTCCACAGGGACTGTTTCTGGCAGTTGCCGGACAACAACCAGCACCCAACAATGGAGAAATCCTGATGCCAACTGATGAACCATTTAACATGCTAAAAGGAGAATATCAACTCGATGTCAATGAAATGTGAGTCTTAATTTTAAATATTGTACTTTTTTAACAAGACAAACACCATGTAACTTGTAGTAGGAGTGCCCCGCACTGTCAAGTTTAAACTTGATTATCTCAATTTCTATGCAAGATATAACAATTGTGTTAACTAATAAATTGTTATCATAACATTACCAATATTTTATCAGTTGACACATTTTTTACATTTTTTTATAGGAATTAAGATAATTGAGCTCAAAGTTGACGCTCTGGATATGCTTCTATTAAGGAGATACGGTAACGTGTAATAGGAGGGCCCCACACTGTCAACTTCGAGCCAATTTATCTCAGCTCCTGTGAAAGATAACAAAAATGTGTCAACTGATAAAATATTTCTGATATTTTGACAAACAGCTTATCAGTTGAAAACTTTTTCATTTCTTTAACAGAAACCAAAATAAATTAGCTCAAAGTTATTTTACGATACATTTTTTTGGGGTCAAAGGT</canonical>
            <polymorphic>TTGAGCACATCTTTTGACTGATTCGAAAAAAATACGGTCTCGAAATATTTTTCACATGAGCCTCTCGAGGAGTTGAACTCGGGGGACGAGTATTGAAGGTGCGGCGCCGCTACCGACTGAGCGTCGCGGAAAAACTCTGAAAAATCTCCAGTAAAGGTGTTCCTAGTAAAATCAAAAACGTCACATAACATATTTATTCCCCCAGTAAACCCGTGACACTGATAATCTATGTTAACAGATATTCCACGCGTCGACTGCTCGTATCAGGATCTCCAGTACCACCTCCTTAGAATACAACCTGTTACTTCCCCAGCTATCCTTCGATTATGCTGGGAATAAACTTGATTTTCAAAGTCTTTGTAAGTTTTGCTCTTTTTTCCGTATTTTATGATTTCAATTTCTGTCCACAGGGACTGTTTCTGGCAGTTGCCGGACAACAACCAGCACCCAACAATGGAGAAATCCTGATGCCAACTGATGAACCATTTAACATGCTAAAWGGAGAATATCAACTCGATGTCAATGAAATGTGAGTCTTAATTTTAAATATTGTACTTTTTTAACAAGACAAACACCATGTAACTTGTAGTAGGAGTGCCCCGCACTGTCAAGTTTAAACTTGATTATCTCAATTTCTATGCAAGATATAACAATTGTGTTAACTAATAAATTGTTATCATAACATTACCAATATTTTATCAGTTGACACATTTTTTACATTTTTTTATAGGAATTAAGATAATTGAGCTCAAAGTTGACGCTCTGGATATGCTTCTATTAAGGAGATACGGTAACGTGTAATAGGAGGGCCCCACACTGTCAACTTCGAGCCAATTTATCTCAGCTCCTGTGAAAGATAACAAAAATGTGTCAACTGATAAAATATTTCTGATATTTTGACAAACAGCTTATCAGTTGAAAACTTTTTCATTTCTTTAACAGAAACCAAAATAAATTAGCTCAAAGTTATTTTACGATACATTTTTTTGGGGTCAAAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAATGGAGAAATCCTGATG</pcr_primer_p1>
		<pcr_primer_p2>ATTTGCATTTGACCTTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>561</pcr_amplicon_size>
		<canonical_amplicon>ACAATGGAGAAATCCTGATGCCAACTGATGAACCATTTAACATGCTAAAAGGAGAATATCAACTCGATG</canonical_amplicon>
		<polymorphic_amplicon>ACAATGGAGAAATCCTGATGCCAACTGATGAACCATTTAACATGCTAAAWGGAGAATATCAACTCGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15092</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>376984</contig_pos>
        <strand></strand>
        <context>TTTAACAAGA[C/A]AAACaccatg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GTCAATGAAATGTGAGTCTTAATTTTAAATATTGTACTTTTTTAACAAGA</left_flank>
        <right_flank>AAACACCATGTAACTTGTAGTAGGAGTGCCCCGCACTGTCAAGTTTAAAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTTGAACTCGGGGGACGAGTATTGAAGGTGCGGCGCCGCTACCGACTGAGCGTCGCGGAAAAACTCTGAAAAATCTCCAGTAAAGGTGTTCCTAGTAAAATCAAAAACGTCACATAACATATTTATTCCCCCAGTAAACCCGTGACACTGATAATCTATGTTAACAGATATTCCACGCGTCGACTGCTCGTATCAGGATCTCCAGTACCACCTCCTTAGAATACAACCTGTTACTTCCCCAGCTATCCTTCGATTATGCTGGGAATAAACTTGATTTTCAAAGTCTTTGTAAGTTTTGCTCTTTTTTCCGTATTTTATGATTTCAATTTCTGTCCACAGGGACTGTTTCTGGCAGTTGCCGGACAACAACCAGCACCCAACAATGGAGAAATCCTGATGCCAACTGATGAACCATTTAACATGCTAAAAGGAGAATATCAACTCGATGTCAATGAAATGTGAGTCTTAATTTTAAATATTGTACTTTTTTAACAAGACAAACACCATGTAACTTGTAGTAGGAGTGCCCCGCACTGTCAAGTTTAAACTTGATTATCTCAATTTCTATGCAAGATATAACAATTGTGTTAACTAATAAATTGTTATCATAACATTACCAATATTTTATCAGTTGACACATTTTTTACATTTTTTTATAGGAATTAAGATAATTGAGCTCAAAGTTGACGCTCTGGATATGCTTCTATTAAGGAGATACGGTAACGTGTAATAGGAGGGCCCCACACTGTCAACTTCGAGCCAATTTATCTCAGCTCCTGTGAAAGATAACAAAAATGTGTCAACTGATAAAATATTTCTGATATTTTGACAAACAGCTTATCAGTTGAAAACTTTTTCATTTCTTTAACAGAAACCAAAATAAATTAGCTCAAAGTTATTTTACGATACATTTTTTTGGGGTCAAAGGTCAAATGCAAATGAGACTTTTATAAGTTTTTAGTTACTGACAAAGATTTTAAGGAGTAACTACCGTCCAA</canonical>
            <polymorphic>GAGTTGAACTCGGGGGACGAGTATTGAAGGTGCGGCGCCGCTACCGACTGAGCGTCGCGGAAAAACTCTGAAAAATCTCCAGTAAAGGTGTTCCTAGTAAAATCAAAAACGTCACATAACATATTTATTCCCCCAGTAAACCCGTGACACTGATAATCTATGTTAACAGATATTCCACGCGTCGACTGCTCGTATCAGGATCTCCAGTACCACCTCCTTAGAATACAACCTGTTACTTCCCCAGCTATCCTTCGATTATGCTGGGAATAAACTTGATTTTCAAAGTCTTTGTAAGTTTTGCTCTTTTTTCCGTATTTTATGATTTCAATTTCTGTCCACAGGGACTGTTTCTGGCAGTTGCCGGACAACAACCAGCACCCAACAATGGAGAAATCCTGATGCCAACTGATGAACCATTTAACATGCTAAAAGGAGAATATCAACTCGATGTCAATGAAATGTGAGTCTTAATTTTAAATATTGTACTTTTTTAACAAGAMAAACACCATGTAACTTGTAGTAGGAGTGCCCCGCACTGTCAAGTTTAAACTTGATTATCTCAATTTCTATGCAAGATATAACAATTGTGTTAACTAATAAATTGTTATCATAACATTACCAATATTTTATCAGTTGACACATTTTTTACATTTTTTTATAGGAATTAAGATAATTGAGCTCAAAGTTGACGCTCTGGATATGCTTCTATTAAGGAGATACGGTAACGTGTAATAGGAGGGCCCCACACTGTCAACTTCGAGCCAATTTATCTCAGCTCCTGTGAAAGATAACAAAAATGTGTCAACTGATAAAATATTTCTGATATTTTGACAAACAGCTTATCAGTTGAAAACTTTTTCATTTCTTTAACAGAAACCAAAATAAATTAGCTCAAAGTTATTTTACGATACATTTTTTTGGGGTCAAAGGTCAAATGCAAATGAGACTTTTATAAGTTTTTAGTTACTGACAAAGATTTTAAGGAGTAACTACCGTCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGTCAATGAAATGTGAGTCTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTGCATTTGACCTTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>496</pcr_amplicon_size>
		<canonical_amplicon>GATGTCAATGAAATGTGAGTCTTAATTTTAAATATTGTACTTTTTTAACAAGACAAACACCATGTAACTTGTAGTAGGAGTGCCCCGCACTGTCAAGTTTAAACTTGATTATCTCAATTTCTATGCAAGATATAACAATTGTGTTAACTAATAAATTGTTATCATAACATTACCAATATTTTATCAGTTGACACATTTTTTACATTTTTTTATAGGAATTAAGATAATTGAGCTCAAAGTTGACGCTCTGGATATGCTTCTATTAAGGAGATACGGTAACGTGTAATAGGAGGGCCCCACACTGTCAACTTCGAGCCAATTTATCTCAGCTCCTGTGAAAGATAACAAAAATGTGTCAACTGATAAAATATTTCTGATATTTTGACAAACAGCTTATCAGTTGAAAACTTTTTCATTTCTTTAACAGAAACCAAAATAAATTAGCTCAAAGTTATTTTACGATACATTTTTTTGGGGTCAAAGGTCAAATGCAAAT</canonical_amplicon>
		<polymorphic_amplicon>GATGTCAATGAAATGTGAGTCTTAATTTTAAATATTGTACTTTTTTAACAAGAMAAACACCATGTAACTTGTAGTAGGAGTGCCCCGCACTGTCAAGTTTAAACTTGATTATCTCAATTTCTATGCAAGATATAACAATTGTGTTAACTAATAAATTGTTATCATAACATTACCAATATTTTATCAGTTGACACATTTTTTACATTTTTTTATAGGAATTAAGATAATTGAGCTCAAAGTTGACGCTCTGGATATGCTTCTATTAAGGAGATACGGTAACGTGTAATAGGAGGGCCCCACACTGTCAACTTCGAGCCAATTTATCTCAGCTCCTGTGAAAGATAACAAAAATGTGTCAACTGATAAAATATTTCTGATATTTTGACAAACAGCTTATCAGTTGAAAACTTTTTCATTTCTTTAACAGAAACCAAAATAAATTAGCTCAAAGTTATTTTACGATACATTTTTTTGGGGTCAAAGGTCAAATGCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15093</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>381130</contig_pos>
        <strand>+</strand>
        <context>TCCTTCTGTT[C/T]TGGAACCATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACACTGTTATCATCTTTCCTCACTACTTTTTTATGCTTCATCCTTCTGTT</left_flank>
        <right_flank>TGGAACCATGTCTTCACTTGTGTCTCACTCAGATTCAATGCATTCGCCAA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAATATTCAAAAATTAATCTGAAAACTACAGTAAACCTCACTATTTTCAACTTTGAAGAGTGTATCCTAAAACTACAGTAGTCCTCATGATTTTCATTTTGGAACAATGAAACCGAAAACTACTGAAATACTTACTGTTTCCAATTTTCAGAATGAATCTGAAGATGACAGTAATCCCTATTTTTTGGTTTTGAATAGAAAAACTTCAGTAATCTCTAATTCTTATTTTCAATTACATGTTCTGGAATTAAAGTTGTTGAATTGATGCCGAAATTCCAAGTTTGCCATCAGTTCTGGGCCTAGAACTCACATGAAAAATTTAAAAAATGTATTTATTCGATAAAAATAAAATGTATGAGAGGTTAAGAAAGAAGAAGAATAAATTGAAGAGATACGATCACCGGTGAGCCTAATATTTCAGTCACTCTCATTATCATTCCCATCATCAACACTGTTATCATCTTTCCTCACTACTTTTTTATGCTTCATCCTTCTGTTCTGGAACCATGTCTTCACTTGTGTCTCACTCAGATTCAATGCATTCGCCAATTCGATTCTCTCTGGTGTACTCAAATATCTGAAAATCAAGCAAAATGTAGGAAAAAAAAAATAAAAGAAAGATTTCAATTAAATCTACCGTTGTGATTCAAATCGTCTCTCCAGCCCTTGAAGTTGTTGATCACTGAACACGGTCCGTGCTTTTCGTCGAGAACTAAAATTGAGAATATTTTAATATTTCGACACCAACCCATTACCATTCCAACCTTAATCTTCTGTATGCTTTCGAAGCGTTTGACAATCGAATCTGATCTGCAGTTGACCAGAAACCAGGAAATACTCCGTTCCTTTGAGCCAACAAAAGACTGTGCTCGATTGGAAATGCGGCGGCGGCTAGCCAGAGTTGATCCGAGAGAGCTGGAGCAATATTCGGAGCGATTTCATTGGATATAGGGAGGGATAACGCTGATAAGGATGGTTTTTCGGAGTTCTGTAAAGAAA</canonical>
            <polymorphic>TCAATATTCAAAAATTAATCTGAAAACTACAGTAAACCTCACTATTTTCAACTTTGAAGAGTGTATCCTAAAACTACAGTAGTCCTCATGATTTTCATTTTGGAACAATGAAACCGAAAACTACTGAAATACTTACTGTTTCCAATTTTCAGAATGAATCTGAAGATGACAGTAATCCCTATTTTTTGGTTTTGAATAGAAAAACTTCAGTAATCTCTAATTCTTATTTTCAATTACATGTTCTGGAATTAAAGTTGTTGAATTGATGCCGAAATTCCAAGTTTGCCATCAGTTCTGGGCCTAGAACTCACATGAAAAATTTAAAAAATGTATTTATTCGATAAAAATAAAATGTATGAGAGGTTAAGAAAGAAGAAGAATAAATTGAAGAGATACGATCACCGGTGAGCCTAATATTTCAGTCACTCTCATTATCATTCCCATCATCAACACTGTTATCATCTTTCCTCACTACTTTTTTATGCTTCATCCTTCTGTTYTGGAACCATGTCTTCACTTGTGTCTCACTCAGATTCAATGCATTCGCCAATTCGATTCTCTCTGGTGTACTCAAATATCTGAAAATCAAGCAAAATGTAGGAAAAAAAAAATAAAAGAAAGATTTCAATTAAATCTACCGTTGTGATTCAAATCGTCTCTCCAGCCCTTGAAGTTGTTGATCACTGAACACGGTCCGTGCTTTTCGTCGAGAACTAAAATTGAGAATATTTTAATATTTCGACACCAACCCATTACCATTCCAACCTTAATCTTCTGTATGCTTTCGAAGCGTTTGACAATCGAATCTGATCTGCAGTTGACCAGAAACCAGGAAATACTCCGTTCCTTTGAGCCAACAAAAGACTGTGCTCGATTGGAAATGCGGCGGCGGCTAGCCAGAGTTGATCCGAGAGAGCTGGAGCAATATTCGGAGCGATTTCATTGGATATAGGGAGGGATAACGCTGATAAGGATGGTTTTTCGGAGTTCTGTAAAGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>292 257 208 156 87</canonical_bands>
                <polymorphic_bands>465 292 156 87</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGAGGTTAAGAAAGAAGAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCCTACATTTTGCTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAGAGGTTAAGAAAGAAGAAGAATAAATTGAAGAGATACGATCACCGGTGAGCCTAATATTTCAGTCACTCTCATTATCATTCCCATCATCAACACTGTTATCATCTTTCCTCACTACTTTTTTATGCTTCATCCTTCTGTTCTGGAACCATGTCTTCACTTGTGTCTCACTCAGATTCAATGCATTCGCCAATTCGATTCTCTCTGGTGTACTCAAATATCTGAAAATCAAGCAAAATGTAGGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGAGAGGTTAAGAAAGAAGAAGAATAAATTGAAGAGATACGATCACCGGTGAGCCTAATATTTCAGTCACTCTCATTATCATTCCCATCATCAACACTGTTATCATCTTTCCTCACTACTTTTTTATGCTTCATCCTTCTGTTYTGGAACCATGTCTTCACTTGTGTCTCACTCAGATTCAATGCATTCGCCAATTCGATTCTCTCTGGTGTACTCAAATATCTGAAAATCAAGCAAAATGTAGGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15094</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>381043</contig_pos>
        <strand>+</strand>
        <context>CGGTGAGCCT[A/C]ATATTTCAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTAAGAAAGAAGAAGAATAAATTGAAGAGATACGATCACCGGTGAGCCT</left_flank>
        <right_flank>ATATTTCAGTCACTCTCATTATCATTCCCATCATCAACACTGTTATCATC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATAATGGATCCGAAAACTACAGTAATCCTTAAATCTTTTATTCAATAGAAATCCTTACTTGAAACTACAGTAATCCTCAAAATTTTCAATATTCAAAAATTAATCTGAAAACTACAGTAAACCTCACTATTTTCAACTTTGAAGAGTGTATCCTAAAACTACAGTAGTCCTCATGATTTTCATTTTGGAACAATGAAACCGAAAACTACTGAAATACTTACTGTTTCCAATTTTCAGAATGAATCTGAAGATGACAGTAATCCCTATTTTTTGGTTTTGAATAGAAAAACTTCAGTAATCTCTAATTCTTATTTTCAATTACATGTTCTGGAATTAAAGTTGTTGAATTGATGCCGAAATTCCAAGTTTGCCATCAGTTCTGGGCCTAGAACTCACATGAAAAATTTAAAAAATGTATTTATTCGATAAAAATAAAATGTATGAGAGGTTAAGAAAGAAGAAGAATAAATTGAAGAGATACGATCACCGGTGAGCCTAATATTTCAGTCACTCTCATTATCATTCCCATCATCAACACTGTTATCATCTTTCCTCACTACTTTTTTATGCTTCATCCTTCTGTTCTGGAACCATGTCTTCACTTGTGTCTCACTCAGATTCAATGCATTCGCCAATTCGATTCTCTCTGGTGTACTCAAATATCTGAAAATCAAGCAAAATGTAGGAAAAAAAAAATAAAAGAAAGATTTCAATTAAATCTACCGTTGTGATTCAAATCGTCTCTCCAGCCCTTGAAGTTGTTGATCACTGAACACGGTCCGTGCTTTTCGTCGAGAACTAAAATTGAGAATATTTTAATATTTCGACACCAACCCATTACCATTCCAACCTTAATCTTCTGTATGCTTTCGAAGCGTTTGACAATCGAATCTGATCTGCAGTTGACCAGAAACCAGGAAATACTCCGTTCCTTTGAGCCAACAAAAGACTGTGCTCGATTGGAAATGCGGCGGCGGCTAGCCAGAGTTGATCCGAGA</canonical>
            <polymorphic>GAATAATGGATCCGAAAACTACAGTAATCCTTAAATCTTTTATTCAATAGAAATCCTTACTTGAAACTACAGTAATCCTCAAAATTTTCAATATTCAAAAATTAATCTGAAAACTACAGTAAACCTCACTATTTTCAACTTTGAAGAGTGTATCCTAAAACTACAGTAGTCCTCATGATTTTCATTTTGGAACAATGAAACCGAAAACTACTGAAATACTTACTGTTTCCAATTTTCAGAATGAATCTGAAGATGACAGTAATCCCTATTTTTTGGTTTTGAATAGAAAAACTTCAGTAATCTCTAATTCTTATTTTCAATTACATGTTCTGGAATTAAAGTTGTTGAATTGATGCCGAAATTCCAAGTTTGCCATCAGTTCTGGGCCTAGAACTCACATGAAAAATTTAAAAAATGTATTTATTCGATAAAAATAAAATGTATGAGAGGTTAAGAAAGAAGAAGAATAAATTGAAGAGATACGATCACCGGTGAGCCTMATATTTCAGTCACTCTCATTATCATTCCCATCATCAACACTGTTATCATCTTTCCTCACTACTTTTTTATGCTTCATCCTTCTGTTCTGGAACCATGTCTTCACTTGTGTCTCACTCAGATTCAATGCATTCGCCAATTCGATTCTCTCTGGTGTACTCAAATATCTGAAAATCAAGCAAAATGTAGGAAAAAAAAAATAAAAGAAAGATTTCAATTAAATCTACCGTTGTGATTCAAATCGTCTCTCCAGCCCTTGAAGTTGTTGATCACTGAACACGGTCCGTGCTTTTCGTCGAGAACTAAAATTGAGAATATTTTAATATTTCGACACCAACCCATTACCATTCCAACCTTAATCTTCTGTATGCTTTCGAAGCGTTTGACAATCGAATCTGATCTGCAGTTGACCAGAAACCAGGAAATACTCCGTTCCTTTGAGCCAACAAAAGACTGTGCTCGATTGGAAATGCGGCGGCGGCTAGCCAGAGTTGATCCGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>410 312 178 92 8</canonical_bands>
                <polymorphic_bands>722 178 92 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGAGGTTAAGAAAGAAGAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCCTACATTTTGCTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAGAGGTTAAGAAAGAAGAAGAATAAATTGAAGAGATACGATCACCGGTGAGCCTAATATTTCAGTCACTCTCATTATCATTCCCATCATCAACACTGTTATCATCTTTCCTCACTACTTTTTTATGCTTCATCCTTCTGTTCTGGAACCATGTCTTCACTTGTGTCTCACTCAGATTCAATGCATTCGCCAATTCGATTCTCTCTGGTGTACTCAAATATCTGAAAATCAAGCAAAATGTAGGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGAGAGGTTAAGAAAGAAGAAGAATAAATTGAAGAGATACGATCACCGGTGAGCCTMATATTTCAGTCACTCTCATTATCATTCCCATCATCAACACTGTTATCATCTTTCCTCACTACTTTTTTATGCTTCATCCTTCTGTTCTGGAACCATGTCTTCACTTGTGTCTCACTCAGATTCAATGCATTCGCCAATTCGATTCTCTCTGGTGTACTCAAATATCTGAAAATCAAGCAAAATGTAGGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15095</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>380882</contig_pos>
        <strand>+</strand>
        <context>TCTGGAATTA[A/C]AGTTGTTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAACTTCAGTAATCTCTAATTCTTATTTTCAATTACATGTTCTGGAATTA</left_flank>
        <right_flank>AGTTGTTGAATTGATGCCGAAATTCCAAGTTTGCCATCAGTTCTGGGCCT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACCGTCACGGTAGAATACATACTCTGGCCCCGAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAAATAAATGAATCCGAAGACAACAGTAACTCTCATTATTTTCAATTTTGTAAAGTGGATCCTAACACTACAGTAATCCTTTTTTCATATTTGAATAATGGATCCGAAAACTACAGTAATCCTTAAATCTTTTATTCAATAGAAATCCTTACTTGAAACTACAGTAATCCTCAAAATTTTCAATATTCAAAAATTAATCTGAAAACTACAGTAAACCTCACTATTTTCAACTTTGAAGAGTGTATCCTAAAACTACAGTAGTCCTCATGATTTTCATTTTGGAACAATGAAACCGAAAACTACTGAAATACTTACTGTTTCCAATTTTCAGAATGAATCTGAAGATGACAGTAATCCCTATTTTTTGGTTTTGAATAGAAAAACTTCAGTAATCTCTAATTCTTATTTTCAATTACATGTTCTGGAATTAAAGTTGTTGAATTGATGCCGAAATTCCAAGTTTGCCATCAGTTCTGGGCCTAGAACTCACATGAAAAATTTAAAAAATGTATTTATTCGATAAAAATAAAATGTATGAGAGGTTAAGAAAGAAGAAGAATAAATTGAAGAGATACGATCACCGGTGAGCCTAATATTTCAGTCACTCTCATTATCATTCCCATCATCAACACTGTTATCATCTTTCCTCACTACTTTTTTATGCTTCATCCTTCTGTTCTGGAACCATGTCTTCACTTGTGTCTCACTCAGATTCAATGCATTCGCCAATTCGATTCTCTCTGGTGTACTCAAATATCTGAAAATCAAGCAAAATGTAGGAAAAAAAAAATAAAAGAAAGATTTCAATTAAATCTACCGTTGTGATTCAAATCGTCTCTCCAGCCCTTGAAGTTGTTGATCACTGAACACGGTCCGTGCTTTTCGTCGAGAACTAAAATTGAGAATATTTTAATATTTCGACACCAACCCA</canonical>
            <polymorphic>CACCGTCACGGTAGAATACATACTCTGGCCCCGAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAAATAAATGAATCCGAAGACAACAGTAACTCTCATTATTTTCAATTTTGTAAAGTGGATCCTAACACTACAGTAATCCTTTTTTCATATTTGAATAATGGATCCGAAAACTACAGTAATCCTTAAATCTTTTATTCAATAGAAATCCTTACTTGAAACTACAGTAATCCTCAAAATTTTCAATATTCAAAAATTAATCTGAAAACTACAGTAAACCTCACTATTTTCAACTTTGAAGAGTGTATCCTAAAACTACAGTAGTCCTCATGATTTTCATTTTGGAACAATGAAACCGAAAACTACTGAAATACTTACTGTTTCCAATTTTCAGAATGAATCTGAAGATGACAGTAATCCCTATTTTTTGGTTTTGAATAGAAAAACTTCAGTAATCTCTAATTCTTATTTTCAATTACATGTTCTGGAATTAMAGTTGTTGAATTGATGCCGAAATTCCAAGTTTGCCATCAGTTCTGGGCCTAGAACTCACATGAAAAATTTAAAAAATGTATTTATTCGATAAAAATAAAATGTATGAGAGGTTAAGAAAGAAGAAGAATAAATTGAAGAGATACGATCACCGGTGAGCCTAATATTTCAGTCACTCTCATTATCATTCCCATCATCAACACTGTTATCATCTTTCCTCACTACTTTTTTATGCTTCATCCTTCTGTTCTGGAACCATGTCTTCACTTGTGTCTCACTCAGATTCAATGCATTCGCCAATTCGATTCTCTCTGGTGTACTCAAATATCTGAAAATCAAGCAAAATGTAGGAAAAAAAAAATAAAAGAAAGATTTCAATTAAATCTACCGTTGTGATTCAAATCGTCTCTCCAGCCCTTGAAGTTGTTGATCACTGAACACGGTCCGTGCTTTTCGTCGAGAACTAAAATTGAGAATATTTTAATATTTCGACACCAACCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>265 234 124 102 72 71 68 43 21</canonical_bands>
                <polymorphic_bands>306 265 124 102 71 68 43 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGTTTTGAATAGAAAAACTTCA</pcr_primer_p1>
		<pcr_primer_p2>GGAATGATAATGAGAGTGACTGA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TGGTTTTGAATAGAAAAACTTCAGTAATCTCTAATTCTTATTTTCAATTACATGTTCTGGAATTAAAGTTGTTGAATTGATGCCGAAATTCCAAGTTTGCCATCAGTTCTGGGCCTAGAACTCACATGAAAAATTTAAAAAATGTATTTATTCGATAAAAATAAAATGTATGAGAGGTTAAGAAAGAAGAAGAATAAATTGAAGAGATACGATCACCGGTGAGCCTAATATTTCAGTCACTCTCATTATCATTCC</canonical_amplicon>
		<polymorphic_amplicon>TGGTTTTGAATAGAAAAACTTCAGTAATCTCTAATTCTTATTTTCAATTACATGTTCTGGAATTAMAGTTGTTGAATTGATGCCGAAATTCCAAGTTTGCCATCAGTTCTGGGCCTAGAACTCACATGAAAAATTTAAAAAATGTATTTATTCGATAAAAATAAAATGTATGAGAGGTTAAGAAAGAAGAAGAATAAATTGAAGAGATACGATCACCGGTGAGCCTAATATTTCAGTCACTCTCATTATCATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15096</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>423858</contig_pos>
        <strand></strand>
        <context>TTTCCTAAAT[G/T]GAAATTCGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAAT</left_flank>
        <right_flank>GAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGATCATGACCTAGATTCCAATTTTTCAATTTCCGGTCACGACCTCGTTTTTAGTTTTTACGTTTTCGCCAAGATTTAATTTTCTAAGCCATGACCTAGTTTTCAATTTTTCGGCCGTGATCTAGATTTCGGTTTCTAGGTCATGGGCGGATACGAGTTTCTAGATCATCAACTGAATTTTAATTTTCATGTTTTGACCTAAAATGTCGATTTTTTGTGACCCAGTTTTCTATTTTTAGGTCATGGCCTAGTTTTCATTTATTGGGTTTCCAGGTCACGACCTAACATTTTGGCTGGAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATTCTCAATTTTTTTCATCCTAACTTTTCCTGGTCTGATGGTTAAAGAACTTTCTAGCAGTGATGAATGGCTGATAACGAGAGCAAGTTTCAAACATCTGACAAGATTTCCTTGTCCTTTTGTGACGACAACTCGTTATCCCATTGAAATCCTTTTGAGTAGTTTTGAAGAGGTTCCCCTCTTCTTCTTTTCTTTGACTCGATAAGAAGAAGAAGGATGTGTCAGGAGACAAATTAGATTCGAGCCTTCGGCCCTGTGCTCCTCCCTTGGGTATTCACACTTTCTTCCATTTTCCGAACTTCTTTTCCTTTCTTTCCCTCGTTATGTATACTCCGTTCTCTCTTCTATATCTATTCTCATGGTTCTGTCTAGTTGATGGGTGTTACAAATATCCAAAAGGTGGAGGATTGTGGTTTCTG</canonical>
            <polymorphic>TTGGATCATGACCTAGATTCCAATTTTTCAATTTCCGGTCACGACCTCGTTTTTAGTTTTTACGTTTTCGCCAAGATTTAATTTTCTAAGCCATGACCTAGTTTTCAATTTTTCGGCCGTGATCTAGATTTCGGTTTCTAGGTCATGGGCGGATACGAGTTTCTAGATCATCAACTGAATTTTAATTTTCATGTTTTGACCTAAAATGTCGATTTTTTGTGACCCAGTTTTCTATTTTTAGGTCATGGCCTAGTTTTCATTTATTGGGTTTCCAGGTCACGACCTAACATTTTGGCTGGAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATKGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATTCTCAATTTTTTTCATCCTAACTTTTCCTGGTCTGATGGTTAAAGAACTTTCTAGCAGTGATGAATGGCTGATAACGAGAGCAAGTTTCAAACATCTGACAAGATTTCCTTGTCCTTTTGTGACGACAACTCGTTATCCCATTGAAATCCTTTTGAGTAGTTTTGAAGAGGTTCCCCTCTTCTTCTTTTCTTTGACTCGATAAGAAGAAGAAGGATGTGTCAGGAGACAAATTAGATTCGAGCCTTCGGCCCTGTGCTCCTCCCTTGGGTATTCACACTTTCTTCCATTTTCCGAACTTCTTTTCCTTTCTTTCCCTCGTTATGTATACTCCGTTCTCTCTTCTATATCTATTCTCATGGTTCTGTCTAGTTGATGGGTGTTACAAATATCCAAAAGGTGGAGGATTGTGGTTTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTCCCCCTATAAGCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATAGCAGGGACCTAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>286</pcr_amplicon_size>
		<canonical_amplicon>GAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATT</canonical_amplicon>
		<polymorphic_amplicon>GAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATKGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15097</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>423885</contig_pos>
        <strand>+</strand>
        <context>GGGTCTGCGC[G/T]TTTATAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGC</left_flank>
        <right_flank>TTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAATTTCCGGTCACGACCTCGTTTTTAGTTTTTACGTTTTCGCCAAGATTTAATTTTCTAAGCCATGACCTAGTTTTCAATTTTTCGGCCGTGATCTAGATTTCGGTTTCTAGGTCATGGGCGGATACGAGTTTCTAGATCATCAACTGAATTTTAATTTTCATGTTTTGACCTAAAATGTCGATTTTTTGTGACCCAGTTTTCTATTTTTAGGTCATGGCCTAGTTTTCATTTATTGGGTTTCCAGGTCACGACCTAACATTTTGGCTGGAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATTCTCAATTTTTTTCATCCTAACTTTTCCTGGTCTGATGGTTAAAGAACTTTCTAGCAGTGATGAATGGCTGATAACGAGAGCAAGTTTCAAACATCTGACAAGATTTCCTTGTCCTTTTGTGACGACAACTCGTTATCCCATTGAAATCCTTTTGAGTAGTTTTGAAGAGGTTCCCCTCTTCTTCTTTTCTTTGACTCGATAAGAAGAAGAAGGATGTGTCAGGAGACAAATTAGATTCGAGCCTTCGGCCCTGTGCTCCTCCCTTGGGTATTCACACTTTCTTCCATTTTCCGAACTTCTTTTCCTTTCTTTCCCTCGTTATGTATACTCCGTTCTCTCTTCTATATCTATTCTCATGGTTCTGTCTAGTTGATGGGTGTTACAAATATCCAAAAGGTGGAGGATTGTGGTTTCTGGGAACAAAAAAAAATAACAAAAAACAT</canonical>
            <polymorphic>TCAATTTCCGGTCACGACCTCGTTTTTAGTTTTTACGTTTTCGCCAAGATTTAATTTTCTAAGCCATGACCTAGTTTTCAATTTTTCGGCCGTGATCTAGATTTCGGTTTCTAGGTCATGGGCGGATACGAGTTTCTAGATCATCAACTGAATTTTAATTTTCATGTTTTGACCTAAAATGTCGATTTTTTGTGACCCAGTTTTCTATTTTTAGGTCATGGCCTAGTTTTCATTTATTGGGTTTCCAGGTCACGACCTAACATTTTGGCTGGAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCKTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATTCTCAATTTTTTTCATCCTAACTTTTCCTGGTCTGATGGTTAAAGAACTTTCTAGCAGTGATGAATGGCTGATAACGAGAGCAAGTTTCAAACATCTGACAAGATTTCCTTGTCCTTTTGTGACGACAACTCGTTATCCCATTGAAATCCTTTTGAGTAGTTTTGAAGAGGTTCCCCTCTTCTTCTTTTCTTTGACTCGATAAGAAGAAGAAGGATGTGTCAGGAGACAAATTAGATTCGAGCCTTCGGCCCTGTGCTCCTCCCTTGGGTATTCACACTTTCTTCCATTTTCCGAACTTCTTTTCCTTTCTTTCCCTCGTTATGTATACTCCGTTCTCTCTTCTATATCTATTCTCATGGTTCTGTCTAGTTGATGGGTGTTACAAATATCCAAAAGGTGGAGGATTGTGGTTTCTGGGAACAAAAAAAAATAACAAAAAACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTCCCCCTATAAGCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATAGCAGGGACCTAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>286</pcr_amplicon_size>
		<canonical_amplicon>GAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATT</canonical_amplicon>
		<polymorphic_amplicon>GAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCKTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15098</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>423974</contig_pos>
        <strand>+</strand>
        <context>TTTTCCTGGT[C/T]TGATGGTTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTAGGTCCCTGCTATTCTCAATTTTTTTCATCCTAACTTTTCCTGGT</left_flank>
        <right_flank>TGATGGTTAAAGAACTTTCTAGCAGTGATGAATGGCTGATAACGAGAGCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGTGATCTAGATTTCGGTTTCTAGGTCATGGGCGGATACGAGTTTCTAGATCATCAACTGAATTTTAATTTTCATGTTTTGACCTAAAATGTCGATTTTTTGTGACCCAGTTTTCTATTTTTAGGTCATGGCCTAGTTTTCATTTATTGGGTTTCCAGGTCACGACCTAACATTTTGGCTGGAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATTCTCAATTTTTTTCATCCTAACTTTTCCTGGTCTGATGGTTAAAGAACTTTCTAGCAGTGATGAATGGCTGATAACGAGAGCAAGTTTCAAACATCTGACAAGATTTCCTTGTCCTTTTGTGACGACAACTCGTTATCCCATTGAAATCCTTTTGAGTAGTTTTGAAGAGGTTCCCCTCTTCTTCTTTTCTTTGACTCGATAAGAAGAAGAAGGATGTGTCAGGAGACAAATTAGATTCGAGCCTTCGGCCCTGTGCTCCTCCCTTGGGTATTCACACTTTCTTCCATTTTCCGAACTTCTTTTCCTTTCTTTCCCTCGTTATGTATACTCCGTTCTCTCTTCTATATCTATTCTCATGGTTCTGTCTAGTTGATGGGTGTTACAAATATCCAAAAGGTGGAGGATTGTGGTTTCTGGGAACAAAAAAAAATAACAAAAAACATTTCAGAGAAGCGAAATCCATGCGAAGATTTGAGATGTGGTCCAGGCGAGGATTGTGTGGTGAACCAGATAAATGGGATTCTTCTCGCTC</canonical>
            <polymorphic>CCGTGATCTAGATTTCGGTTTCTAGGTCATGGGCGGATACGAGTTTCTAGATCATCAACTGAATTTTAATTTTCATGTTTTGACCTAAAATGTCGATTTTTTGTGACCCAGTTTTCTATTTTTAGGTCATGGCCTAGTTTTCATTTATTGGGTTTCCAGGTCACGACCTAACATTTTGGCTGGAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATTCTCAATTTTTTTCATCCTAACTTTTCCTGGTYTGATGGTTAAAGAACTTTCTAGCAGTGATGAATGGCTGATAACGAGAGCAAGTTTCAAACATCTGACAAGATTTCCTTGTCCTTTTGTGACGACAACTCGTTATCCCATTGAAATCCTTTTGAGTAGTTTTGAAGAGGTTCCCCTCTTCTTCTTTTCTTTGACTCGATAAGAAGAAGAAGGATGTGTCAGGAGACAAATTAGATTCGAGCCTTCGGCCCTGTGCTCCTCCCTTGGGTATTCACACTTTCTTCCATTTTCCGAACTTCTTTTCCTTTCTTTCCCTCGTTATGTATACTCCGTTCTCTCTTCTATATCTATTCTCATGGTTCTGTCTAGTTGATGGGTGTTACAAATATCCAAAAGGTGGAGGATTGTGGTTTCTGGGAACAAAAAAAAATAACAAAAAACATTTCAGAGAAGCGAAATCCATGCGAAGATTTGAGATGTGGTCCAGGCGAGGATTGTGTGGTGAACCAGATAAATGGGATTCTTCTCGCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>501 196 155 85 63</canonical_bands>
                <polymorphic_bands>564 196 155 85</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGCAAACACATATTTTTAGG</pcr_primer_p1>
		<pcr_primer_p2>TTATCGAGTCAAAGAAAAGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>AATTGCAAACACATATTTTTAGGTCCCTGCTATTCTCAATTTTTTTCATCCTAACTTTTCCTGGTCTGATGGTTAAAGAACTTTCTAGCAGTGATGAATGGCTGATAACGAGAGCAAGTTTCAAACATCTGACAAGATTTCCTTGTCCTTTTGTGACGACAACTCGTTATCCCATTGAAATCCTTTTGAGTAGTTTTGAAGAGGTTCCCCTCTTCTTCTTTTCTTTGACTCGATAA</canonical_amplicon>
		<polymorphic_amplicon>AATTGCAAACACATATTTTTAGGTCCCTGCTATTCTCAATTTTTTTCATCCTAACTTTTCCTGGTYTGATGGTTAAAGAACTTTCTAGCAGTGATGAATGGCTGATAACGAGAGCAAGTTTCAAACATCTGACAAGATTTCCTTGTCCTTTTGTGACGACAACTCGTTATCCCATTGAAATCCTTTTGAGTAGTTTTGAAGAGGTTCCCCTCTTCTTCTTTTCTTTGACTCGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15099</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>424040</contig_pos>
        <strand>+</strand>
        <context>CAAACATCTG[A/T]CAAGATTTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCTAGCAGTGATGAATGGCTGATAACGAGAGCAAGTTTCAAACATCTG</left_flank>
        <right_flank>CAAGATTTCCTTGTCCTTTTGTGACGACAACTCGTTATCCCATTGAAATC</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATTTTCATGTTTTGACCTAAAATGTCGATTTTTTGTGACCCAGTTTTCTATTTTTAGGTCATGGCCTAGTTTTCATTTATTGGGTTTCCAGGTCACGACCTAACATTTTGGCTGGAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATTCTCAATTTTTTTCATCCTAACTTTTCCTGGTCTGATGGTTAAAGAACTTTCTAGCAGTGATGAATGGCTGATAACGAGAGCAAGTTTCAAACATCTGACAAGATTTCCTTGTCCTTTTGTGACGACAACTCGTTATCCCATTGAAATCCTTTTGAGTAGTTTTGAAGAGGTTCCCCTCTTCTTCTTTTCTTTGACTCGATAAGAAGAAGAAGGATGTGTCAGGAGACAAATTAGATTCGAGCCTTCGGCCCTGTGCTCCTCCCTTGGGTATTCACACTTTCTTCCATTTTCCGAACTTCTTTTCCTTTCTTTCCCTCGTTATGTATACTCCGTTCTCTCTTCTATATCTATTCTCATGGTTCTGTCTAGTTGATGGGTGTTACAAATATCCAAAAGGTGGAGGATTGTGGTTTCTGGGAACAAAAAAAAATAACAAAAAACATTTCAGAGAAGCGAAATCCATGCGAAGATTTGAGATGTGGTCCAGGCGAGGATTGTGTGGTGAACCAGATAAATGGGATTCTTCTCGCTCAATGCATCTGCCCGACTCAATGTCCAAATTATGGTGATTCGGTGGAATCTTCACCTGTCTGCTCGT</canonical>
            <polymorphic>TAATTTTCATGTTTTGACCTAAAATGTCGATTTTTTGTGACCCAGTTTTCTATTTTTAGGTCATGGCCTAGTTTTCATTTATTGGGTTTCCAGGTCACGACCTAACATTTTGGCTGGAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATTCTCAATTTTTTTCATCCTAACTTTTCCTGGTCTGATGGTTAAAGAACTTTCTAGCAGTGATGAATGGCTGATAACGAGAGCAAGTTTCAAACATCTGWCAAGATTTCCTTGTCCTTTTGTGACGACAACTCGTTATCCCATTGAAATCCTTTTGAGTAGTTTTGAAGAGGTTCCCCTCTTCTTCTTTTCTTTGACTCGATAAGAAGAAGAAGGATGTGTCAGGAGACAAATTAGATTCGAGCCTTCGGCCCTGTGCTCCTCCCTTGGGTATTCACACTTTCTTCCATTTTCCGAACTTCTTTTCCTTTCTTTCCCTCGTTATGTATACTCCGTTCTCTCTTCTATATCTATTCTCATGGTTCTGTCTAGTTGATGGGTGTTACAAATATCCAAAAGGTGGAGGATTGTGGTTTCTGGGAACAAAAAAAAATAACAAAAAACATTTCAGAGAAGCGAAATCCATGCGAAGATTTGAGATGTGGTCCAGGCGAGGATTGTGTGGTGAACCAGATAAATGGGATTCTTCTCGCTCAATGCATCTGCCCGACTCAATGTCCAAATTATGGTGATTCGGTGGAATCTTCACCTGTCTGCTCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>435 196 155 151 63</canonical_bands>
                <polymorphic_bands>435 259 155 151</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGAACTTTCTAGCAGTGATGA</pcr_primer_p1>
		<pcr_primer_p2>GAAAATGGAAGAAAGTGTGAATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAGAACTTTCTAGCAGTGATGAATGGCTGATAACGAGAGCAAGTTTCAAACATCTGACAAGATTTCCTTGTCCTTTTGTGACGACAACTCGTTATCCCATTGAAATCCTTTTGAGTAGTTTTGAAGAGGTTCCCCTCTTCTTCTTTTCTTTGACTCGATAAGAAGAAGAAGGATGTGTCAGGAGACAAATTAGATTCGAGCCTTCGGCCCTGTGCTCCTCCCTTGGGTATTCACACTTTCTTCCATTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAGAACTTTCTAGCAGTGATGAATGGCTGATAACGAGAGCAAGTTTCAAACATCTGWCAAGATTTCCTTGTCCTTTTGTGACGACAACTCGTTATCCCATTGAAATCCTTTTGAGTAGTTTTGAAGAGGTTCCCCTCTTCTTCTTTTCTTTGACTCGATAAGAAGAAGAAGGATGTGTCAGGAGACAAATTAGATTCGAGCCTTCGGCCCTGTGCTCCTCCCTTGGGTATTCACACTTTCTTCCATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15100</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>424145</contig_pos>
        <strand>+</strand>
        <context>GACTCGATAA[A/G]AAGAAGAARG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAGTAGTTTTGAAGAGGTTCCCCTCTTCTTCTTTTCTTTGACTCGATAA</left_flank>
        <right_flank>AAGAAGAAGGATGTGTCAGGAGACAAATTAGATTCGAGCCTTCGGCCCTG</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTTGGCTGGAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATTCTCAATTTTTTTCATCCTAACTTTTCCTGGTCTGATGGTTAAAGAACTTTCTAGCAGTGATGAATGGCTGATAACGAGAGCAAGTTTCAAACATCTGACAAGATTTCCTTGTCCTTTTGTGACGACAACTCGTTATCCCATTGAAATCCTTTTGAGTAGTTTTGAAGAGGTTCCCCTCTTCTTCTTTTCTTTGACTCGATAAGAAGAAGAAGGATGTGTCAGGAGACAAATTAGATTCGAGCCTTCGGCCCTGTGCTCCTCCCTTGGGTATTCACACTTTCTTCCATTTTCCGAACTTCTTTTCCTTTCTTTCCCTCGTTATGTATACTCCGTTCTCTCTTCTATATCTATTCTCATGGTTCTGTCTAGTTGATGGGTGTTACAAATATCCAAAAGGTGGAGGATTGTGGTTTCTGGGAACAAAAAAAAATAACAAAAAACATTTCAGAGAAGCGAAATCCATGCGAAGATTTGAGATGTGGTCCAGGCGAGGATTGTGTGGTGAACCAGATAAATGGGATTCTTCTCGCTCAATGCATCTGCCCGACTCAATGTCCAAATTATGGTGATTCGGTGGAATCTTCACCTGTCTGCTCGTCGCATGGTGTCGATTACCAATCTTCGTGTCATTTGAGACACCACGCTTGTGAATCAAAGACAAACATCACAGTCAAGTTTTATGGCAGATGTGGTGAGTCGGTGA</canonical>
            <polymorphic>CATTTTGGCTGGAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATTCTCAATTTTTTTCATCCTAACTTTTCCTGGTCTGATGGTTAAAGAACTTTCTAGCAGTGATGAATGGCTGATAACGAGAGCAAGTTTCAAACATCTGACAAGATTTCCTTGTCCTTTTGTGACGACAACTCGTTATCCCATTGAAATCCTTTTGAGTAGTTTTGAAGAGGTTCCCCTCTTCTTCTTTTCTTTGACTCGATAARAAGAAGAAGGATGTGTCAGGAGACAAATTAGATTCGAGCCTTCGGCCCTGTGCTCCTCCCTTGGGTATTCACACTTTCTTCCATTTTCCGAACTTCTTTTCCTTTCTTTCCCTCGTTATGTATACTCCGTTCTCTCTTCTATATCTATTCTCATGGTTCTGTCTAGTTGATGGGTGTTACAAATATCCAAAAGGTGGAGGATTGTGGTTTCTGGGAACAAAAAAAAATAACAAAAAACATTTCAGAGAAGCGAAATCCATGCGAAGATTTGAGATGTGGTCCAGGCGAGGATTGTGTGGTGAACCAGATAAATGGGATTCTTCTCGCTCAATGCATCTGCCCGACTCAATGTCCAAATTATGGTGATTCGGTGGAATCTTCACCTGTCTGCTCGTCGCATGGTGTCGATTACCAATCTTCGTGTCATTTGAGACACCACGCTTGTGAATCAAAGACAAACATCACAGTCAAGTTTTATGGCAGATGTGGTGAGTCGGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAACTTTCTAGCAGTGATGA</pcr_primer_p1>
		<pcr_primer_p2>GAAAATGGAAGAAAGTGTGAATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAGAACTTTCTAGCAGTGATGAATGGCTGATAACGAGAGCAAGTTTCAAACATCTGACAAGATTTCCTTGTCCTTTTGTGACGACAACTCGTTATCCCATTGAAATCCTTTTGAGTAGTTTTGAAGAGGTTCCCCTCTTCTTCTTTTCTTTGACTCGATAAGAAGAAGAAGGATGTGTCAGGAGACAAATTAGATTCGAGCCTTCGGCCCTGTGCTCCTCCCTTGGGTATTCACACTTTCTTCCATTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAGAACTTTCTAGCAGTGATGAATGGCTGATAACGAGAGCAAGTTTCAAACATCTGACAAGATTTCCTTGTCCTTTTGTGACGACAACTCGTTATCCCATTGAAATCCTTTTGAGTAGTTTTGAAGAGGTTCCCCTCTTCTTCTTTTCTTTGACTCGATAARAAGAAGAAGGATGTGTCAGGAGACAAATTAGATTCGAGCCTTCGGCCCTGTGCTCCTCCCTTGGGTATTCACACTTTCTTCCATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15101</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>425204</contig_pos>
        <strand>+</strand>
        <context>gaaTTCGACA[A/T]TATGTCAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACTCTAGGCCATCAATTTGGAAATGGTATAACTCGGTTCGAATTCGACA</left_flank>
        <right_flank>TATGTCAAGAACATTATGTCAAGACCAAAAGGTTTCAGATCCATGCCATG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTTCAGAATCAATATTTTTAGATAATCTAAACTTGATATGATAAAACTTAATAAGTGCTACAAAATGATATTATTCGAAAAACTGTATCTAGTCTATGAACAAAGTTACAGAAGAAGCGGATTAAAAACAGGCAGAGCGCGGCCCAGCCCGGATTGGCTACTTTATGGCTTGTAACTTTGTTCATAGACAAGTTGAAATTTTTAAACACTATCATTTCGTAGTACTCGTCAAGTTCTATTATAGCTAGTTTGGTTGGCCCAAAACATTAATTCTAAAATAAACTACGGCAGAGCCTGCAAAGGCGCACCAAATTTTAGATTTTCTAGGCTACCAACTAATTGAGCGAAATCAGAACGTTTCGAAACAAGTTTCAGGATTCGTATAGCTTCACGTTAGCTAACTTACATCCCCTTTAAGTTGGTCGCCTAGAAACCCAAACCTTCGGAACTCTAGGCCATCAATTTGGAAATGGTATAACTCGGTTCGAATTCGACAATATGTCAAGAACATTATGTCAAGACCAAAAGGTTTCAGATCCATGCCATGGCCACAAATGTCCAAATGGTCAGACGTGTCAGTTGGGAGTGGATAGAAGACCAGAATGTAGATGTAGCGAGCAATGCTCGATGAATAGTGCGCATGTCTGTGGAACTGATGGAAAAACGTAGGTGAAAATGTACAGAATTACCCGGACTAAAAATGAAACGCCAAGGAGCGCGCGTATTTTAAAGGCGCATATCTCAACAGCTTAAAATGATAGGCTTATTTTACTAACTAACAAAATGCGTGCAATTTTAAGTTCTATATTTTTGTAGTTCACTCCATTTTCATAACTACTGTAGTTTTTGAGATAAAGCGCTCAAAGTTTGCTTTTTTTAGCTGGCGGGGTGGAACATAATTCAATTCTGTAGTAGGATAAAATTTGAGTTGTACTGAGCTGAAAGTCGGTATGCTGAAAATCAAATATTTCATCAGTAAACTGGCCAAGTTACTTGA</canonical>
            <polymorphic>TTCTTTCAGAATCAATATTTTTAGATAATCTAAACTTGATATGATAAAACTTAATAAGTGCTACAAAATGATATTATTCGAAAAACTGTATCTAGTCTATGAACAAAGTTACAGAAGAAGCGGATTAAAAACAGGCAGAGCGCGGCCCAGCCCGGATTGGCTACTTTATGGCTTGTAACTTTGTTCATAGACAAGTTGAAATTTTTAAACACTATCATTTCGTAGTACTCGTCAAGTTCTATTATAGCTAGTTTGGTTGGCCCAAAACATTAATTCTAAAATAAACTACGGCAGAGCCTGCAAAGGCGCACCAAATTTTAGATTTTCTAGGCTACCAACTAATTGAGCGAAATCAGAACGTTTCGAAACAAGTTTCAGGATTCGTATAGCTTCACGTTAGCTAACTTACATCCCCTTTAAGTTGGTCGCCTAGAAACCCAAACCTTCGGAACTCTAGGCCATCAATTTGGAAATGGTATAACTCGGTTCGAATTCGACAWTATGTCAAGAACATTATGTCAAGACCAAAAGGTTTCAGATCCATGCCATGGCCACAAATGTCCAAATGGTCAGACGTGTCAGTTGGGAGTGGATAGAAGACCAGAATGTAGATGTAGCGAGCAATGCTCGATGAATAGTGCGCATGTCTGTGGAACTGATGGAAAAACGTAGGTGAAAATGTACAGAATTACCCGGACTAAAAATGAAACGCCAAGGAGCGCGCGTATTTTAAAGGCGCATATCTCAACAGCTTAAAATGATAGGCTTATTTTACTAACTAACAAAATGCGTGCAATTTTAAGTTCTATATTTTTGTAGTTCACTCCATTTTCATAACTACTGTAGTTTTTGAGATAAAGCGCTCAAAGTTTGCTTTTTTTAGCTGGCGGGGTGGAACATAATTCAATTCTGTAGTAGGATAAAATTTGAGTTGTACTGAGCTGAAAGTCGGTATGCTGAAAATCAAATATTTCATCAGTAAACTGGCCAAGTTACTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGAAACTTTTAGGAAACTTCAA</pcr_primer_p1>
		<pcr_primer_p2>GTCTGACCATTTGGACATTT</pcr_primer_p2>
		<pcr_amplicon_size>629</pcr_amplicon_size>
		<canonical_amplicon>AATATGTCAAGAACATTATGTCAAGACCAAAAGGTTTCAGATCCATGCCATGGCCACAAATGTCCAAATGGTCAGAC</canonical_amplicon>
		<polymorphic_amplicon>AWTATGTCAAGAACATTATGTCAAGACCAAAAGGTTTCAGATCCATGCCATGGCCACAAATGTCCAAATGGTCAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15103</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>429187</contig_pos>
        <strand>+</strand>
        <context>ATATGGATCG[C/T]CTAGGAGTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAGCCAGTTTCCCGGATTGTGTCTGCCCTCAAACTTGCAATATGGATCG</left_flank>
        <right_flank>CTAGGAGTGGTGGCAAACATGACAGTTTGTGGCTCTGATGGAACTACGTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGAAATGATCTAACATACACCTGATGTGTTTCCTAGGCCATTTAACATGATGGCCTAACTTTTGGAGTTGATTTTTCTAAGTCACCCATATTTAGAGGCTGGAAATGACCAGATATTGACCTGGTGGGTCACCTTGGCTGTTTGGACGTGGCGACCTAACTTTTCAAGTTGAGTTTTCTAGGTCACCATGTAAATGACCTAGAAAACTATAAGGCCATTACTAGGCTGTTGCACCTAGTGGCCTAGAAAACTCACCTTGCAAAAGTTAGGCTACCATGATAAAACAATCTCGAGCACACTGATCCCAGTTTAGTGTTCGGACCGTTCGAACGGACTTAAACAATTGAATTCAGCAATTTTCGAAAATTATCTTTCGGAAAACACCTGTTTTTTCTCAGAGATTGTCACTCCCTCCGCTGCTTCCATGGAGCCAAATGTGTCCCCTCGCCAGCCAGTTTCCCGGATTGTGTCTGCCCTCAAACTTGCAATATGGATCGCCTAGGAGTGGTGGCAAACATGACAGTTTGTGGCTCTGATGGAACTACGTATTCAAATCTTTGTGAACTTAAAATGTTCGCCTGTAAGCATCAGATGGATGTGGTACCAGTTTCCATGGGAATCTGTGATGATGGTAAGGATTTTGAATGAGAGGGATTTAATCAATTAATATACAGAAAGTTTCGAAGTTTTGGATCGTCTCCAGAGAGAGCAAAACACTAAGGAGAAGAGATTAGGGTCTCCATGTTCTAGACATGAAGATTGTGAAAAAGTTAGTTTGAACTACCGTAAAACCTGTTTTAGGTCCCTGTAATAAAAGAGCCCCTTAAATTGACAAAATAAAATTCAGCTATCCGCACAATGCATAACTCGCCCAGGAAGGAAATCTGTTTGTGACTGTGGAGAAGGATGGAGAAGTCATCAAGGCATTTGTGTAGAAATTTTCAAAAAGAGAAGTTGGATTTAGGAAAAATTCTATTTAAAAACATATATAATTTTAG</canonical>
            <polymorphic>CCAGAAATGATCTAACATACACCTGATGTGTTTCCTAGGCCATTTAACATGATGGCCTAACTTTTGGAGTTGATTTTTCTAAGTCACCCATATTTAGAGGCTGGAAATGACCAGATATTGACCTGGTGGGTCACCTTGGCTGTTTGGACGTGGCGACCTAACTTTTCAAGTTGAGTTTTCTAGGTCACCATGTAAATGACCTAGAAAACTATAAGGCCATTACTAGGCTGTTGCACCTAGTGGCCTAGAAAACTCACCTTGCAAAAGTTAGGCTACCATGATAAAACAATCTCGAGCACACTGATCCCAGTTTAGTGTTCGGACCGTTCGAACGGACTTAAACAATTGAATTCAGCAATTTTCGAAAATTATCTTTCGGAAAACACCTGTTTTTTCTCAGAGATTGTCACTCCCTCCGCTGCTTCCATGGAGCCAAATGTGTCCCCTCGCCAGCCAGTTTCCCGGATTGTGTCTGCCCTCAAACTTGCAATATGGATCGYCTAGGAGTGGTGGCAAACATGACAGTTTGTGGCTCTGATGGAACTACGTATTCAAATCTTTGTGAACTTAAAATGTTCGCCTGTAAGCATCAGATGGATGTGGTACCAGTTTCCATGGGAATCTGTGATGATGGTAAGGATTTTGAATGAGAGGGATTTAATCAATTAATATACAGAAAGTTTCGAAGTTTTGGATCGTCTCCAGAGAGAGCAAAACACTAAGGAGAAGAGATTAGGGTCTCCATGTTCTAGACATGAAGATTGTGAAAAAGTTAGTTTGAACTACCGTAAAACCTGTTTTAGGTCCCTGTAATAAAAGAGCCCCTTAAATTGACAAAATAAAATTCAGCTATCCGCACAATGCATAACTCGCCCAGGAAGGAAATCTGTTTGTGACTGTGGAGAAGGATGGAGAAGTCATCAAGGCATTTGTGTAGAAATTTTCAAAAAGAGAAGTTGGATTTAGGAAAAATTCTATTTAAAAACATATATAATTTTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCTAGG</site>
                <isoschizomers>
                    <enzyme>AvrII</enzyme>
                    <enzyme>BlnI</enzyme>
                    <enzyme>BspA2I</enzyme>
                    <enzyme>XmaJI</enzyme>
                </isoschizomers>
                <canonical_bands>500 466 34</canonical_bands>
                <polymorphic_bands>966 34</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>291 260 127 113 100 75 34</canonical_bands>
                <polymorphic_bands>291 260 188 127 100 34</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>294 283 223 200</canonical_bands>
                <polymorphic_bands>577 223 200</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>387 291 113 100 75 34</canonical_bands>
                <polymorphic_bands>387 291 188 100 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTCAGAGATTGTCACTCC</pcr_primer_p1>
		<pcr_primer_p2>ATCCTTACCATCATCACAGATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTCAGAGATTGTCACTCCCTCCGCTGCTTCCATGGAGCCAAATGTGTCCCCTCGCCAGCCAGTTTCCCGGATTGTGTCTGCCCTCAAACTTGCAATATGGATCGCCTAGGAGTGGTGGCAAACATGACAGTTTGTGGCTCTGATGGAACTACGTATTCAAATCTTTGTGAACTTAAAATGTTCGCCTGTAAGCATCAGATGGATGTGGTACCAGTTTCCATGGGAATCTGTGATGATGGTAAGGAT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTCAGAGATTGTCACTCCCTCCGCTGCTTCCATGGAGCCAAATGTGTCCCCTCGCCAGCCAGTTTCCCGGATTGTGTCTGCCCTCAAACTTGCAATATGGATCGYCTAGGAGTGGTGGCAAACATGACAGTTTGTGGCTCTGATGGAACTACGTATTCAAATCTTTGTGAACTTAAAATGTTCGCCTGTAAGCATCAGATGGATGTGGTACCAGTTTCCATGGGAATCTGTGATGATGGTAAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15104</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>429420</contig_pos>
        <strand>+</strand>
        <context>GGAGAAGAGA[C/T]TAGGGTCTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGAAGTTTTGGATCGTCTCCAGAGAGAGCAAAACACTAAGGAGAAGAGA</left_flank>
        <right_flank>TAGGGTCTCCATGTTCTAGACATGAAGATTGTGAAAAAGTTAGTTTGAAC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACCTAGTGGCCTAGAAAACTCACCTTGCAAAAGTTAGGCTACCATGATAAAACAATCTCGAGCACACTGATCCCAGTTTAGTGTTCGGACCGTTCGAACGGACTTAAACAATTGAATTCAGCAATTTTCGAAAATTATCTTTCGGAAAACACCTGTTTTTTCTCAGAGATTGTCACTCCCTCCGCTGCTTCCATGGAGCCAAATGTGTCCCCTCGCCAGCCAGTTTCCCGGATTGTGTCTGCCCTCAAACTTGCAATATGGATCGCCTAGGAGTGGTGGCAAACATGACAGTTTGTGGCTCTGATGGAACTACGTATTCAAATCTTTGTGAACTTAAAATGTTCGCCTGTAAGCATCAGATGGATGTGGTACCAGTTTCCATGGGAATCTGTGATGATGGTAAGGATTTTGAATGAGAGGGATTTAATCAATTAATATACAGAAAGTTTCGAAGTTTTGGATCGTCTCCAGAGAGAGCAAAACACTAAGGAGAAGAGATTAGGGTCTCCATGTTCTAGACATGAAGATTGTGAAAAAGTTAGTTTGAACTACCGTAAAACCTGTTTTAGGTCCCTGTAATAAAAGAGCCCCTTAAATTGACAAAATAAAATTCAGCTATCCGCACAATGCATAACTCGCCCAGGAAGGAAATCTGTTTGTGACTGTGGAGAAGGATGGAGAAGTCATCAAGGCATTTGTGTAGAAATTTTCAAAAAGAGAAGTTGGATTTAGGAAAAATTCTATTTAAAAACATATATAATTTTAGAATATGATCAACTAGAACTAGCCACTGATCTGAAATCTGATTGGTTTGTTTCGAGAAAAGATGTGACCAGATTCTCAAAACTCTCTTTGCATGTAAGAATTCAAATTTAGATTCCTCCCAAATTCCCCAATTTTTTAAAGATTCACCTCAAAGAGAAACGAGAAGGGACACTATTGAGAATGGTGACAGAAGACAAAAAGGACTTGGAAATCGTTCATGAAAATCGACGGATC</canonical>
            <polymorphic>CACCTAGTGGCCTAGAAAACTCACCTTGCAAAAGTTAGGCTACCATGATAAAACAATCTCGAGCACACTGATCCCAGTTTAGTGTTCGGACCGTTCGAACGGACTTAAACAATTGAATTCAGCAATTTTCGAAAATTATCTTTCGGAAAACACCTGTTTTTTCTCAGAGATTGTCACTCCCTCCGCTGCTTCCATGGAGCCAAATGTGTCCCCTCGCCAGCCAGTTTCCCGGATTGTGTCTGCCCTCAAACTTGCAATATGGATCGCCTAGGAGTGGTGGCAAACATGACAGTTTGTGGCTCTGATGGAACTACGTATTCAAATCTTTGTGAACTTAAAATGTTCGCCTGTAAGCATCAGATGGATGTGGTACCAGTTTCCATGGGAATCTGTGATGATGGTAAGGATTTTGAATGAGAGGGATTTAATCAATTAATATACAGAAAGTTTCGAAGTTTTGGATCGTCTCCAGAGAGAGCAAAACACTAAGGAGAAGAGAYTAGGGTCTCCATGTTCTAGACATGAAGATTGTGAAAAAGTTAGTTTGAACTACCGTAAAACCTGTTTTAGGTCCCTGTAATAAAAGAGCCCCTTAAATTGACAAAATAAAATTCAGCTATCCGCACAATGCATAACTCGCCCAGGAAGGAAATCTGTTTGTGACTGTGGAGAAGGATGGAGAAGTCATCAAGGCATTTGTGTAGAAATTTTCAAAAAGAGAAGTTGGATTTAGGAAAAATTCTATTTAAAAACATATATAATTTTAGAATATGATCAACTAGAACTAGCCACTGATCTGAAATCTGATTGGTTTGTTTCGAGAAAAGATGTGACCAGATTCTCAAAACTCTCTTTGCATGTAAGAATTCAAATTTAGATTCCTCCCAAATTCCCCAATTTTTTAAAGATTCACCTCAAAGAGAAACGAGAAGGGACACTATTGAGAATGGTGACAGAAGACAAAAAGGACTTGGAAATCGTTCATGAAAATCGACGGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTATTCAAATCTTTGTGAACTT</pcr_primer_p1>
		<pcr_primer_p2>ACGGTAGTTCAAACTAACTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CGTATTCAAATCTTTGTGAACTTAAAATGTTCGCCTGTAAGCATCAGATGGATGTGGTACCAGTTTCCATGGGAATCTGTGATGATGGTAAGGATTTTGAATGAGAGGGATTTAATCAATTAATATACAGAAAGTTTCGAAGTTTTGGATCGTCTCCAGAGAGAGCAAAACACTAAGGAGAAGAGATTAGGGTCTCCATGTTCTAGACATGAAGATTGTGAAAAAGTTAGTTTGAACTACCGT</canonical_amplicon>
		<polymorphic_amplicon>CGTATTCAAATCTTTGTGAACTTAAAATGTTCGCCTGTAAGCATCAGATGGATGTGGTACCAGTTTCCATGGGAATCTGTGATGATGGTAAGGATTTTGAATGAGAGGGATTTAATCAATTAATATACAGAAAGTTTCGAAGTTTTGGATCGTCTCCAGAGAGAGCAAAACACTAAGGAGAAGAGAYTAGGGTCTCCATGTTCTAGACATGAAGATTGTGAAAAAGTTAGTTTGAACTACCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15105</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>429435</contig_pos>
        <strand>+</strand>
        <context>GTCTCCATGT[A/T]CTAGACATGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCTCCAGAGAGAGCAAAACACTAAGGAGAAGAGATTAGGGTCTCCATGT</left_flank>
        <right_flank>CTAGACATGAAGATTGTGAAAAAGTTAGTTTGAACTACCGTAAAACCTGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACTCACCTTGCAAAAGTTAGGCTACCATGATAAAACAATCTCGAGCACACTGATCCCAGTTTAGTGTTCGGACCGTTCGAACGGACTTAAACAATTGAATTCAGCAATTTTCGAAAATTATCTTTCGGAAAACACCTGTTTTTTCTCAGAGATTGTCACTCCCTCCGCTGCTTCCATGGAGCCAAATGTGTCCCCTCGCCAGCCAGTTTCCCGGATTGTGTCTGCCCTCAAACTTGCAATATGGATCGCCTAGGAGTGGTGGCAAACATGACAGTTTGTGGCTCTGATGGAACTACGTATTCAAATCTTTGTGAACTTAAAATGTTCGCCTGTAAGCATCAGATGGATGTGGTACCAGTTTCCATGGGAATCTGTGATGATGGTAAGGATTTTGAATGAGAGGGATTTAATCAATTAATATACAGAAAGTTTCGAAGTTTTGGATCGTCTCCAGAGAGAGCAAAACACTAAGGAGAAGAGATTAGGGTCTCCATGTTCTAGACATGAAGATTGTGAAAAAGTTAGTTTGAACTACCGTAAAACCTGTTTTAGGTCCCTGTAATAAAAGAGCCCCTTAAATTGACAAAATAAAATTCAGCTATCCGCACAATGCATAACTCGCCCAGGAAGGAAATCTGTTTGTGACTGTGGAGAAGGATGGAGAAGTCATCAAGGCATTTGTGTAGAAATTTTCAAAAAGAGAAGTTGGATTTAGGAAAAATTCTATTTAAAAACATATATAATTTTAGAATATGATCAACTAGAACTAGCCACTGATCTGAAATCTGATTGGTTTGTTTCGAGAAAAGATGTGACCAGATTCTCAAAACTCTCTTTGCATGTAAGAATTCAAATTTAGATTCCTCCCAAATTCCCCAATTTTTTAAAGATTCACCTCAAAGAGAAACGAGAAGGGACACTATTGAGAATGGTGACAGAAGACAAAAAGGACTTGGAAATCGTTCATGAAAATCGACGGATCGTTATCATGTATGTA</canonical>
            <polymorphic>AAAACTCACCTTGCAAAAGTTAGGCTACCATGATAAAACAATCTCGAGCACACTGATCCCAGTTTAGTGTTCGGACCGTTCGAACGGACTTAAACAATTGAATTCAGCAATTTTCGAAAATTATCTTTCGGAAAACACCTGTTTTTTCTCAGAGATTGTCACTCCCTCCGCTGCTTCCATGGAGCCAAATGTGTCCCCTCGCCAGCCAGTTTCCCGGATTGTGTCTGCCCTCAAACTTGCAATATGGATCGCCTAGGAGTGGTGGCAAACATGACAGTTTGTGGCTCTGATGGAACTACGTATTCAAATCTTTGTGAACTTAAAATGTTCGCCTGTAAGCATCAGATGGATGTGGTACCAGTTTCCATGGGAATCTGTGATGATGGTAAGGATTTTGAATGAGAGGGATTTAATCAATTAATATACAGAAAGTTTCGAAGTTTTGGATCGTCTCCAGAGAGAGCAAAACACTAAGGAGAAGAGATTAGGGTCTCCATGTWCTAGACATGAAGATTGTGAAAAAGTTAGTTTGAACTACCGTAAAACCTGTTTTAGGTCCCTGTAATAAAAGAGCCCCTTAAATTGACAAAATAAAATTCAGCTATCCGCACAATGCATAACTCGCCCAGGAAGGAAATCTGTTTGTGACTGTGGAGAAGGATGGAGAAGTCATCAAGGCATTTGTGTAGAAATTTTCAAAAAGAGAAGTTGGATTTAGGAAAAATTCTATTTAAAAACATATATAATTTTAGAATATGATCAACTAGAACTAGCCACTGATCTGAAATCTGATTGGTTTGTTTCGAGAAAAGATGTGACCAGATTCTCAAAACTCTCTTTGCATGTAAGAATTCAAATTTAGATTCCTCCCAAATTCCCCAATTTTTTAAAGATTCACCTCAAAGAGAAACGAGAAGGGACACTATTGAGAATGGTGACAGAAGACAAAAAGGACTTGGAAATCGTTCATGAAAATCGACGGATCGTTATCATGTATGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>411 303 164 47 43 32</canonical_bands>
                <polymorphic_bands>411 350 164 43 32</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTAAGCATCAGATGGATGT</pcr_primer_p1>
		<pcr_primer_p2>ATTTAAGGGGCTCTTTTATTACA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTGTAAGCATCAGATGGATGTGGTACCAGTTTCCATGGGAATCTGTGATGATGGTAAGGATTTTGAATGAGAGGGATTTAATCAATTAATATACAGAAAGTTTCGAAGTTTTGGATCGTCTCCAGAGAGAGCAAAACACTAAGGAGAAGAGATTAGGGTCTCCATGTTCTAGACATGAAGATTGTGAAAAAGTTAGTTTGAACTACCGTAAAACCTGTTTTAGGTCCCTGTAATAAAAGAGCCCCTTAAAT</canonical_amplicon>
		<polymorphic_amplicon>CTGTAAGCATCAGATGGATGTGGTACCAGTTTCCATGGGAATCTGTGATGATGGTAAGGATTTTGAATGAGAGGGATTTAATCAATTAATATACAGAAAGTTTCGAAGTTTTGGATCGTCTCCAGAGAGAGCAAAACACTAAGGAGAAGAGATTAGGGTCTCCATGTWCTAGACATGAAGATTGTGAAAAAGTTAGTTTGAACTACCGTAAAACCTGTTTTAGGTCCCTGTAATAAAAGAGCCCCTTAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15106</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>430771</contig_pos>
        <strand>+</strand>
        <context>TTCAGAGTTA[A/G]CAAAGCACGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACACAATCGCAAAAATTTCTTCTTATCAGTTAAAATGGTTTCAGAGTTA</left_flank>
        <right_flank>CAAAGCACGAGTCGAATCATTACAAACGATTGCGTATAATGTTAGCTTGG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCAACTGACAAAACCAACCTTTTGGATCTTATGATAAGCATTTTGTCAGTTGACAACTTTTTGATTTTGATCGCTTACAGAATCTCTGAAATTCGATTTTCGAGAGGGCTAAAATTCCATAAAATTCAATTAAACCCCAATTTTTTCTATTCAATGTCTAGTTTAGCATCCTGATGACATTTTTGGAATCAGGAAGAGTTTTCGGGCAACATTCTTGCAGAAAAATGTTTTAATTAATTTTCGCCCTCTTCGAATCTTTTTGCAAATGTCTAATGAGATTTGTCATCTGATTTTGAAAATTACATTTGAGAAAAAGACACCTACCACACTGTCATCAGAATCATGCCGAACGCGACTGAATTCAATATTAGATCCAGGTTTTCTGGAAAAATCAATAACGATGGAATGTCTTCCACTCATCTTTTAGAAGTTTAATGATAAGAGACAGACACAATCGCAAAAATTTCTTCTTATCAGTTAAAATGGTTTCAGAGTTAGCAAAGCACGAGTCGAATCATTACAAACGATTGCGTATAATGTTAGCTTGGAGGTGAGGAATTGATGGAAAACCCTGTAATAGAAGAGCCTCGCATTGTCAACTTTGAGCTTAACTATCTCGGTTTCTATGAAAGATATCCAAAAATTGACAACGGATAAAATATTGGTGATATTATGATCAACAATTTATCAGTTTAACCTTTTTGATATCTCCCACAAACACCTGGATAAATTGGCCCAAAGTTAAAAGCCAGAGAGCCCTTTTATTACAGGTTTCAGGCTAATCGAAAAATACTCTAGATAAGTGGTTTCAGTTGAAATGGAGAAGAAACGAATTGCATTTCAAACTAAACGGAGAGATTCAAAAACACACTTTCGACGGTGTTCTGGATTCGTCTGCTAAGAAAATCTTCTTGGGTTCGGATGGAAAATGGCCGAAAAGTCGATTGTATGCAATTATTGGATTCCTAGAGATTGATGATGTTCCTGTTCGAATAGCT</canonical>
            <polymorphic>AATCAACTGACAAAACCAACCTTTTGGATCTTATGATAAGCATTTTGTCAGTTGACAACTTTTTGATTTTGATCGCTTACAGAATCTCTGAAATTCGATTTTCGAGAGGGCTAAAATTCCATAAAATTCAATTAAACCCCAATTTTTTCTATTCAATGTCTAGTTTAGCATCCTGATGACATTTTTGGAATCAGGAAGAGTTTTCGGGCAACATTCTTGCAGAAAAATGTTTTAATTAATTTTCGCCCTCTTCGAATCTTTTTGCAAATGTCTAATGAGATTTGTCATCTGATTTTGAAAATTACATTTGAGAAAAAGACACCTACCACACTGTCATCAGAATCATGCCGAACGCGACTGAATTCAATATTAGATCCAGGTTTTCTGGAAAAATCAATAACGATGGAATGTCTTCCACTCATCTTTTAGAAGTTTAATGATAAGAGACAGACACAATCGCAAAAATTTCTTCTTATCAGTTAAAATGGTTTCAGAGTTARCAAAGCACGAGTCGAATCATTACAAACGATTGCGTATAATGTTAGCTTGGAGGTGAGGAATTGATGGAAAACCCTGTAATAGAAGAGCCTCGCATTGTCAACTTTGAGCTTAACTATCTCGGTTTCTATGAAAGATATCCAAAAATTGACAACGGATAAAATATTGGTGATATTATGATCAACAATTTATCAGTTTAACCTTTTTGATATCTCCCACAAACACCTGGATAAATTGGCCCAAAGTTAAAAGCCAGAGAGCCCTTTTATTACAGGTTTCAGGCTAATCGAAAAATACTCTAGATAAGTGGTTTCAGTTGAAATGGAGAAGAAACGAATTGCATTTCAAACTAAACGGAGAGATTCAAAAACACACTTTCGACGGTGTTCTGGATTCGTCTGCTAAGAAAATCTTCTTGGGTTCGGATGGAAAATGGCCGAAAAGTCGATTGTATGCAATTATTGGATTCCTAGAGATTGATGATGTTCCTGTTCGAATAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAAAAGACACCTACCACAC</pcr_primer_p1>
		<pcr_primer_p2>TCACCTCCAAGCTAACATTATAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAGAAAAAGACACCTACCACACTGTCATCAGAATCATGCCGAACGCGACTGAATTCAATATTAGATCCAGGTTTTCTGGAAAAATCAATAACGATGGAATGTCTTCCACTCATCTTTTAGAAGTTTAATGATAAGAGACAGACACAATCGCAAAAATTTCTTCTTATCAGTTAAAATGGTTTCAGAGTTAGCAAAGCACGAGTCGAATCATTACAAACGATTGCGTATAATGTTAGCTTGGAGGTGA</canonical_amplicon>
		<polymorphic_amplicon>GAGAAAAAGACACCTACCACACTGTCATCAGAATCATGCCGAACGCGACTGAATTCAATATTAGATCCAGGTTTTCTGGAAAAATCAATAACGATGGAATGTCTTCCACTCATCTTTTAGAAGTTTAATGATAAGAGACAGACACAATCGCAAAAATTTCTTCTTATCAGTTAAAATGGTTTCAGAGTTARCAAAGCACGAGTCGAATCATTACAAACGATTGCGTATAATGTTAGCTTGGAGGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15107</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>431672</contig_pos>
        <strand></strand>
        <context>TTTTCAGAGG[C/A]MTTTTTTATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTGTGGAAATTGCATTCAACCGTACCGAACAAACGGTAATTTTTCAGAGG</left_flank>
        <right_flank>TTTTTTTATTTACAATACTGGTCAATCAGATTTTTGGCCATTTTGACCAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAAAATCTTCTTGGGTTCGGATGGAAAATGGCCGAAAAGTCGATTGTATGCAATTATTGGATTCCTAGAGATTGATGATGTTCCTGTTCGAATAGCTGATGTCAAACCATTCTGTATGATAACTTCTGAACTTGACAATTAATTCGGAGGGTGCAAAGAGTTAAGGGTCATTAGGGTACAAGACATTTTAGGGTTACAAAATACCTGAAAAAATCCGACCTTTGTACCCCCGAATCGTGGATTTTGTATCCCTAAATCACGTTATACCCCTTTGTGCCCCCGAACTGCTGTACCCTTCGAATAATCTGCATATCTTCTGGACTTTGATTTTGAAAATATTTTGACAAATTTCAGACATGACTCCGGAAATCTCCCGAATCGTTAAATTCAAGGAGAATGGATATCTGAAATATGAAAATTTGAATATGGATGTGAGAGAGAAGACGTTTGTGGAAATTGCATTCAACCGTACCGAACAAACGGTAATTTTTCAGAGGCTTTTTTTATTTACAATACTGGTCAATCAGATTTTTGGCCATTTTGACCATTTACAGAAGTCTAGAGGTCTGCTGTCAAGTTTCCGATCACTTTGAAAGTTTTGGAGGGTGTAAAACAGACCTAGATTGAGCATTTGGCATTCACAGAACTTTTTGAAAACTCCTAGATTTTCAAACATTTGCCAATTTCTGAAAGGTACCCCTTTTTGACCTATTTTTGGGCTCCGCGGCACTTTGAAATTGTGACCCTTTAAAACTAGTCATTTCGAAACCAGTCTTTTCTAAACCGGTCATTTTGAAACCGTGGCAATACATGCGGATGCATAAATTTCAGACTACGAAAACAATTTTAGAGTTTTCAAATATGCTTTTCCATCATATTCTGAAATCCGAAAAAATCCAAAATGTAATTTTTTTCAAAAATATTTGTTTGGAATTTTTGTAGTTTTTAGGATGTGTTCCATCAGAAAAAAAGCATATTTGAAAAATCTAAAATTGTTT</canonical>
            <polymorphic>AAGAAAATCTTCTTGGGTTCGGATGGAAAATGGCCGAAAAGTCGATTGTATGCAATTATTGGATTCCTAGAGATTGATGATGTTCCTGTTCGAATAGCTGATGTCAAACCATTCTGTATGATAACTTCTGAACTTGACAATTAATTCGGAGGGTGCAAAGAGTTAAGGGTCATTAGGGTACAAGACATTTTAGGGTTACAAAATACCTGAAAAAATCCGACCTTTGTACCCCCGAATCGTGGATTTTGTATCCCTAAATCACGTTATACCCCTTTGTGCCCCCGAACTGCTGTACCCTTCGAATAATCTGCATATCTTCTGGACTTTGATTTTGAAAATATTTTGACAAATTTCAGACATGACTCCGGAAATCTCCCGAATCGTTAAATTCAAGGAGAATGGATATCTGAAATATGAAAATTTGAATATGGATGTGAGAGAGAAGACGTTTGTGGAAATTGCATTCAACCGTACCGAACAAACGGTAATTTTTCAGAGGMTTTTTTTATTTACAATACTGGTCAATCAGATTTTTGGCCATTTTGACCATTTACAGAAGTCTAGAGGTCTGCTGTCAAGTTTCCGATCACTTTGAAAGTTTTGGAGGGTGTAAAACAGACCTAGATTGAGCATTTGGCATTCACAGAACTTTTTGAAAACTCCTAGATTTTCAAACATTTGCCAATTTCTGAAAGGTACCCCTTTTTGACCTATTTTTGGGCTCCGCGGCACTTTGAAATTGTGACCCTTTAAAACTAGTCATTTCGAAACCAGTCTTTTCTAAACCGGTCATTTTGAAACCGTGGCAATACATGCGGATGCATAAATTTCAGACTACGAAAACAATTTTAGAGTTTTCAAATATGCTTTTCCATCATATTCTGAAATCCGAAAAAATCCAAAATGTAATTTTTTTCAAAAATATTTGTTTGGAATTTTTGTAGTTTTTAGGATGTGTTCCATCAGAAAAAAAGCATATTTGAAAAATCTAAAATTGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>402 279 184 64 38 33</canonical_bands>
                <polymorphic_bands>440 279 184 64 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGACGTTTGTGGAAATTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTCGTAGTCTGAAATTTATGC</pcr_primer_p2>
		<pcr_amplicon_size>402</pcr_amplicon_size>
		<canonical_amplicon>GAAGACGTTTGTGGAAATTGCATTCAACCGTACCGAACAAACGGTAATTTTTCAGAGGCTTTTTTTATTTACAATACTGGTCAATCAGATTTTTGGCCATTTTGACCATTTACAGAAGTCTAGAGGTCTGCTGTCAAGTTTCCGATCACTTTGAAAGTTTTGGAGGGTGTAAAACAGACCTAGATTGAGCATTTGGCATTCACAGAACTTTTTGAAAACTCCTAGATTTTCAAACATTTGCCAATTTCTGAAAGGTACCCCTTTTTGACCTATTTTTGGGCTCCGCGGCACTTTGAAATTGTGACCCTTTAAAACTAGTCATTTCGAAACCAGTCTTTTCTAAACCGGTCATTTTGAAACCGTGGCAATACATGCGGATGCATAAATTTCAGACTACGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAAGACGTTTGTGGAAATTGCATTCAACCGTACCGAACAAACGGTAATTTTTCAGAGGMTTTTTTTATTTACAATACTGGTCAATCAGATTTTTGGCCATTTTGACCATTTACAGAAGTCTAGAGGTCTGCTGTCAAGTTTCCGATCACTTTGAAAGTTTTGGAGGGTGTAAAACAGACCTAGATTGAGCATTTGGCATTCACAGAACTTTTTGAAAACTCCTAGATTTTCAAACATTTGCCAATTTCTGAAAGGTACCCCTTTTTGACCTATTTTTGGGCTCCGCGGCACTTTGAAATTGTGACCCTTTAAAACTAGTCATTTCGAAACCAGTCTTTTCTAAACCGGTCATTTTGAAACCGTGGCAATACATGCGGATGCATAAATTTCAGACTACGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15127</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>19485</contig_pos>
        <strand>+</strand>
        <context>TCTAAAAGAA[A/T]CATGCACATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCCTCAGGATGAGTCACAAGTTTCCCTCATCTCCTCTGCTTCTAAAAGAA</left_flank>
        <right_flank>CATGCACATCTTTTCACACCGTCAATCAAATTGTCGTTTTTTTCTCTTCT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGATTTCGATATGATCATATCTCCAAAAAATAGAGAAATTCCGTATTCTTATAACCAAGATGGTATAACATCAGCTTTTTTATTACGGTTGGTGAAGAGCAATTTAAGCTCACCCTGGACCATGGTGAAACCTGCAGGTTCCTGGTTTTGACAACTTTGCTCATAGCTGAAGCGCTCCCCATTCGGATTAGTTTAGAACTCCCGAATCATCACGTCACATCCTCGAATCCTCTATCACAAAATCTGCTCACCATTTGAATTGTTCTTCACAAAGTCCCGCCTCCATTCCATGCAGTTTGTGTTGTGGTTCTCACTAAATCATCATGATAAACATCTGTATTTCCTTTGCTCTTTGCCGCCCATAAAAAGCGAGTAAAAGTAATGCTATTAGCTGTGGATCAAAAACCTTCGCGGTTTTTTTCGTTTCTTGACTCTGAAATATTTCCCCCTCAGGATGAGTCACAAGTTTCCCTCATCTCCTCTGCTTCTAAAAGAAACATGCACATCTTTTCACACCGTCAATCAAATTGTCGTTTTTTTCTCTTCTTTCCTTGCGAATAAAAAAAAGCTGCCGATTCTTCTGCGCCGATAATGAAGTGAAATTGAGTCTTTTTCTAATGAAAAGGCATAAAGAAAAAAGAAAAAAATCTTGTTTTTAGAATTCCGAATTAATTTTATTGTTCTGGAAGGAGTAACCTGAATTCTTGGTATACGCGTCCGGAAGTCATCCCCTCTTCAGGAAAACCTGTTTTCGGTTTTTGTGCTAGTACGGAACAAAAATAAGTATTCCAATCCAACCAAAAGGAATACGTGTATGGTCGTTTACCTCAATTGTCTCTCTTTTTCACATGGAGATAATCTGGAAGTTTATACGGCTGAACTATCCGAATAATTTAATATTCCAAAAACTGAGAAGCAATATTCTGGGAGCGGTGCTCCAGCACCATTTTTTATTCTCTTTTGCTTGCTTTCTTGGCCGAGAATAACTAGTGAACTA</canonical>
            <polymorphic>TTTTGATTTCGATATGATCATATCTCCAAAAAATAGAGAAATTCCGTATTCTTATAACCAAGATGGTATAACATCAGCTTTTTTATTACGGTTGGTGAAGAGCAATTTAAGCTCACCCTGGACCATGGTGAAACCTGCAGGTTCCTGGTTTTGACAACTTTGCTCATAGCTGAAGCGCTCCCCATTCGGATTAGTTTAGAACTCCCGAATCATCACGTCACATCCTCGAATCCTCTATCACAAAATCTGCTCACCATTTGAATTGTTCTTCACAAAGTCCCGCCTCCATTCCATGCAGTTTGTGTTGTGGTTCTCACTAAATCATCATGATAAACATCTGTATTTCCTTTGCTCTTTGCCGCCCATAAAAAGCGAGTAAAAGTAATGCTATTAGCTGTGGATCAAAAACCTTCGCGGTTTTTTTCGTTTCTTGACTCTGAAATATTTCCCCCTCAGGATGAGTCACAAGTTTCCCTCATCTCCTCTGCTTCTAAAAGAAWCATGCACATCTTTTCACACCGTCAATCAAATTGTCGTTTTTTTCTCTTCTTTCCTTGCGAATAAAAAAAAGCTGCCGATTCTTCTGCGCCGATAATGAAGTGAAATTGAGTCTTTTTCTAATGAAAAGGCATAAAGAAAAAAGAAAAAAATCTTGTTTTTAGAATTCCGAATTAATTTTATTGTTCTGGAAGGAGTAACCTGAATTCTTGGTATACGCGTCCGGAAGTCATCCCCTCTTCAGGAAAACCTGTTTTCGGTTTTTGTGCTAGTACGGAACAAAAATAAGTATTCCAATCCAACCAAAAGGAATACGTGTATGGTCGTTTACCTCAATTGTCTCTCTTTTTCACATGGAGATAATCTGGAAGTTTATACGGCTGAACTATCCGAATAATTTAATATTCCAAAAACTGAGAAGCAATATTCTGGGAGCGGTGCTCCAGCACCATTTTTTATTCTCTTTTGCTTGCTTTCTTGGCCGAGAATAACTAGTGAACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCGTTTCTTGACTCTGAAATA</pcr_primer_p1>
		<pcr_primer_p2>ATTCGGAATTCTAAAAACAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTCGTTTCTTGACTCTGAAATATTTCCCCCTCAGGATGAGTCACAAGTTTCCCTCATCTCCTCTGCTTCTAAAAGAAACATGCACATCTTTTCACACCGTCAATCAAATTGTCGTTTTTTTCTCTTCTTTCCTTGCGAATAAAAAAAAGCTGCCGATTCTTCTGCGCCGATAATGAAGTGAAATTGAGTCTTTTTCTAATGAAAAGGCATAAAGAAAAAAGAAAAAAATCTTGTTTTTAGAATTCCGAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCGTTTCTTGACTCTGAAATATTTCCCCCTCAGGATGAGTCACAAGTTTCCCTCATCTCCTCTGCTTCTAAAAGAAWCATGCACATCTTTTCACACCGTCAATCAAATTGTCGTTTTTTTCTCTTCTTTCCTTGCGAATAAAAAAAAGCTGCCGATTCTTCTGCGCCGATAATGAAGTGAAATTGAGTCTTTTTCTAATGAAAAGGCATAAAGAAAAAAGAAAAAAATCTTGTTTTTAGAATTCCGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15128</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>19579</contig_pos>
        <strand></strand>
        <context>CTGCGCCGAT[A/G]ATGAAGTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCTTCTTTCCTTGCGAATAAAAAAAAGCTGCCGATTCTTCTGCGCCGAT</left_flank>
        <right_flank>ATGAAGTGAAATTGAGTCTTTTTCTAATGAAAAGGCATAAAGAAAAAAGA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGAAGAGCAATTTAAGCTCACCCTGGACCATGGTGAAACCTGCAGGTTCCTGGTTTTGACAACTTTGCTCATAGCTGAAGCGCTCCCCATTCGGATTAGTTTAGAACTCCCGAATCATCACGTCACATCCTCGAATCCTCTATCACAAAATCTGCTCACCATTTGAATTGTTCTTCACAAAGTCCCGCCTCCATTCCATGCAGTTTGTGTTGTGGTTCTCACTAAATCATCATGATAAACATCTGTATTTCCTTTGCTCTTTGCCGCCCATAAAAAGCGAGTAAAAGTAATGCTATTAGCTGTGGATCAAAAACCTTCGCGGTTTTTTTCGTTTCTTGACTCTGAAATATTTCCCCCTCAGGATGAGTCACAAGTTTCCCTCATCTCCTCTGCTTCTAAAAGAAACATGCACATCTTTTCACACCGTCAATCAAATTGTCGTTTTTTTCTCTTCTTTCCTTGCGAATAAAAAAAAGCTGCCGATTCTTCTGCGCCGATAATGAAGTGAAATTGAGTCTTTTTCTAATGAAAAGGCATAAAGAAAAAAGAAAAAAATCTTGTTTTTAGAATTCCGAATTAATTTTATTGTTCTGGAAGGAGTAACCTGAATTCTTGGTATACGCGTCCGGAAGTCATCCCCTCTTCAGGAAAACCTGTTTTCGGTTTTTGTGCTAGTACGGAACAAAAATAAGTATTCCAATCCAACCAAAAGGAATACGTGTATGGTCGTTTACCTCAATTGTCTCTCTTTTTCACATGGAGATAATCTGGAAGTTTATACGGCTGAACTATCCGAATAATTTAATATTCCAAAAACTGAGAAGCAATATTCTGGGAGCGGTGCTCCAGCACCATTTTTTATTCTCTTTTGCTTGCTTTCTTGGCCGAGAATAACTAGTGAACTAGAGTGAAAAGGAGCACATTGTTCCAAAAGGGGACATATTGTGTGTTGATGTTAACTATTGTAGAAATGTATATTGTGGTTAGAGAGCCCGATTT</canonical>
            <polymorphic>GTGAAGAGCAATTTAAGCTCACCCTGGACCATGGTGAAACCTGCAGGTTCCTGGTTTTGACAACTTTGCTCATAGCTGAAGCGCTCCCCATTCGGATTAGTTTAGAACTCCCGAATCATCACGTCACATCCTCGAATCCTCTATCACAAAATCTGCTCACCATTTGAATTGTTCTTCACAAAGTCCCGCCTCCATTCCATGCAGTTTGTGTTGTGGTTCTCACTAAATCATCATGATAAACATCTGTATTTCCTTTGCTCTTTGCCGCCCATAAAAAGCGAGTAAAAGTAATGCTATTAGCTGTGGATCAAAAACCTTCGCGGTTTTTTTCGTTTCTTGACTCTGAAATATTTCCCCCTCAGGATGAGTCACAAGTTTCCCTCATCTCCTCTGCTTCTAAAAGAAACATGCACATCTTTTCACACCGTCAATCAAATTGTCGTTTTTTTCTCTTCTTTCCTTGCGAATAAAAAAAAGCTGCCGATTCTTCTGCGCCGATRATGAAGTGAAATTGAGTCTTTTTCTAATGAAAAGGCATAAAGAAAAAAGAAAAAAATCTTGTTTTTAGAATTCCGAATTAATTTTATTGTTCTGGAAGGAGTAACCTGAATTCTTGGTATACGCGTCCGGAAGTCATCCCCTCTTCAGGAAAACCTGTTTTCGGTTTTTGTGCTAGTACGGAACAAAAATAAGTATTCCAATCCAACCAAAAGGAATACGTGTATGGTCGTTTACCTCAATTGTCTCTCTTTTTCACATGGAGATAATCTGGAAGTTTATACGGCTGAACTATCCGAATAATTTAATATTCCAAAAACTGAGAAGCAATATTCTGGGAGCGGTGCTCCAGCACCATTTTTTATTCTCTTTTGCTTGCTTTCTTGGCCGAGAATAACTAGTGAACTAGAGTGAAAAGGAGCACATTGTTCCAAAAGGGGACATATTGTGTGTTGATGTTAACTATTGTAGAAATGTATATTGTGGTTAGAGAGCCCGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCGTTTCTTGACTCTGAAATA</pcr_primer_p1>
		<pcr_primer_p2>ATTCGGAATTCTAAAAACAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTCGTTTCTTGACTCTGAAATATTTCCCCCTCAGGATGAGTCACAAGTTTCCCTCATCTCCTCTGCTTCTAAAAGAAACATGCACATCTTTTCACACCGTCAATCAAATTGTCGTTTTTTTCTCTTCTTTCCTTGCGAATAAAAAAAAGCTGCCGATTCTTCTGCGCCGATAATGAAGTGAAATTGAGTCTTTTTCTAATGAAAAGGCATAAAGAAAAAAGAAAAAAATCTTGTTTTTAGAATTCCGAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCGTTTCTTGACTCTGAAATATTTCCCCCTCAGGATGAGTCACAAGTTTCCCTCATCTCCTCTGCTTCTAAAAGAAACATGCACATCTTTTCACACCGTCAATCAAATTGTCGTTTTTTTCTCTTCTTTCCTTGCGAATAAAAAAAAGCTGCCGATTCTTCTGCGCCGATRATGAAGTGAAATTGAGTCTTTTTCTAATGAAAAGGCATAAAGAAAAAAGAAAAAAATCTTGTTTTTAGAATTCCGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15129</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>19603</contig_pos>
        <strand>+</strand>
        <context>GAGTCTTTTT[A/C]TAATGAAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAGCTGCCGATTCTTCTGCGCCGATAATGAAGTGAAATTGAGTCTTTTT</left_flank>
        <right_flank>TAATGAAAAGGCATAAAGAAAAAAGAAAAAAATCTTGTTTTTAGAATTCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGACCATGGTGAAACCTGCAGGTTCCTGGTTTTGACAACTTTGCTCATAGCTGAAGCGCTCCCCATTCGGATTAGTTTAGAACTCCCGAATCATCACGTCACATCCTCGAATCCTCTATCACAAAATCTGCTCACCATTTGAATTGTTCTTCACAAAGTCCCGCCTCCATTCCATGCAGTTTGTGTTGTGGTTCTCACTAAATCATCATGATAAACATCTGTATTTCCTTTGCTCTTTGCCGCCCATAAAAAGCGAGTAAAAGTAATGCTATTAGCTGTGGATCAAAAACCTTCGCGGTTTTTTTCGTTTCTTGACTCTGAAATATTTCCCCCTCAGGATGAGTCACAAGTTTCCCTCATCTCCTCTGCTTCTAAAAGAAACATGCACATCTTTTCACACCGTCAATCAAATTGTCGTTTTTTTCTCTTCTTTCCTTGCGAATAAAAAAAAGCTGCCGATTCTTCTGCGCCGATAATGAAGTGAAATTGAGTCTTTTTCTAATGAAAAGGCATAAAGAAAAAAGAAAAAAATCTTGTTTTTAGAATTCCGAATTAATTTTATTGTTCTGGAAGGAGTAACCTGAATTCTTGGTATACGCGTCCGGAAGTCATCCCCTCTTCAGGAAAACCTGTTTTCGGTTTTTGTGCTAGTACGGAACAAAAATAAGTATTCCAATCCAACCAAAAGGAATACGTGTATGGTCGTTTACCTCAATTGTCTCTCTTTTTCACATGGAGATAATCTGGAAGTTTATACGGCTGAACTATCCGAATAATTTAATATTCCAAAAACTGAGAAGCAATATTCTGGGAGCGGTGCTCCAGCACCATTTTTTATTCTCTTTTGCTTGCTTTCTTGGCCGAGAATAACTAGTGAACTAGAGTGAAAAGGAGCACATTGTTCCAAAAGGGGACATATTGTGTGTTGATGTTAACTATTGTAGAAATGTATATTGTGGTTAGAGAGCCCGATTTTTATACTGGTTCGAAATATTCAAA</canonical>
            <polymorphic>TGGACCATGGTGAAACCTGCAGGTTCCTGGTTTTGACAACTTTGCTCATAGCTGAAGCGCTCCCCATTCGGATTAGTTTAGAACTCCCGAATCATCACGTCACATCCTCGAATCCTCTATCACAAAATCTGCTCACCATTTGAATTGTTCTTCACAAAGTCCCGCCTCCATTCCATGCAGTTTGTGTTGTGGTTCTCACTAAATCATCATGATAAACATCTGTATTTCCTTTGCTCTTTGCCGCCCATAAAAAGCGAGTAAAAGTAATGCTATTAGCTGTGGATCAAAAACCTTCGCGGTTTTTTTCGTTTCTTGACTCTGAAATATTTCCCCCTCAGGATGAGTCACAAGTTTCCCTCATCTCCTCTGCTTCTAAAAGAAACATGCACATCTTTTCACACCGTCAATCAAATTGTCGTTTTTTTCTCTTCTTTCCTTGCGAATAAAAAAAAGCTGCCGATTCTTCTGCGCCGATAATGAAGTGAAATTGAGTCTTTTTMTAATGAAAAGGCATAAAGAAAAAAGAAAAAAATCTTGTTTTTAGAATTCCGAATTAATTTTATTGTTCTGGAAGGAGTAACCTGAATTCTTGGTATACGCGTCCGGAAGTCATCCCCTCTTCAGGAAAACCTGTTTTCGGTTTTTGTGCTAGTACGGAACAAAAATAAGTATTCCAATCCAACCAAAAGGAATACGTGTATGGTCGTTTACCTCAATTGTCTCTCTTTTTCACATGGAGATAATCTGGAAGTTTATACGGCTGAACTATCCGAATAATTTAATATTCCAAAAACTGAGAAGCAATATTCTGGGAGCGGTGCTCCAGCACCATTTTTTATTCTCTTTTGCTTGCTTTCTTGGCCGAGAATAACTAGTGAACTAGAGTGAAAAGGAGCACATTGTTCCAAAAGGGGACATATTGTGTGTTGATGTTAACTATTGTAGAAATGTATATTGTGGTTAGAGAGCCCGATTTTTATACTGGTTCGAAATATTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCGTTTCTTGACTCTGAAATA</pcr_primer_p1>
		<pcr_primer_p2>ATTCGGAATTCTAAAAACAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTCGTTTCTTGACTCTGAAATATTTCCCCCTCAGGATGAGTCACAAGTTTCCCTCATCTCCTCTGCTTCTAAAAGAAACATGCACATCTTTTCACACCGTCAATCAAATTGTCGTTTTTTTCTCTTCTTTCCTTGCGAATAAAAAAAAGCTGCCGATTCTTCTGCGCCGATAATGAAGTGAAATTGAGTCTTTTTCTAATGAAAAGGCATAAAGAAAAAAGAAAAAAATCTTGTTTTTAGAATTCCGAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCGTTTCTTGACTCTGAAATATTTCCCCCTCAGGATGAGTCACAAGTTTCCCTCATCTCCTCTGCTTCTAAAAGAAACATGCACATCTTTTCACACCGTCAATCAAATTGTCGTTTTTTTCTCTTCTTTCCTTGCGAATAAAAAAAAGCTGCCGATTCTTCTGCGCCGATAATGAAGTGAAATTGAGTCTTTTTMTAATGAAAAGGCATAAAGAAAAAAGAAAAAAATCTTGTTTTTAGAATTCCGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15130</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>19626</contig_pos>
        <strand>+</strand>
        <context>ATAAAGAAAA[A/C]AGAAAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATAATGAAGTGAAATTGAGTCTTTTTCTAATGAAAAGGCATAAAGAAAA</left_flank>
        <right_flank>AGAAAAAAATCTTGTTTTTAGAATTCCGAATTAATTTTATTGTTCTGGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCTGGTTTTGACAACTTTGCTCATAGCTGAAGCGCTCCCCATTCGGATTAGTTTAGAACTCCCGAATCATCACGTCACATCCTCGAATCCTCTATCACAAAATCTGCTCACCATTTGAATTGTTCTTCACAAAGTCCCGCCTCCATTCCATGCAGTTTGTGTTGTGGTTCTCACTAAATCATCATGATAAACATCTGTATTTCCTTTGCTCTTTGCCGCCCATAAAAAGCGAGTAAAAGTAATGCTATTAGCTGTGGATCAAAAACCTTCGCGGTTTTTTTCGTTTCTTGACTCTGAAATATTTCCCCCTCAGGATGAGTCACAAGTTTCCCTCATCTCCTCTGCTTCTAAAAGAAACATGCACATCTTTTCACACCGTCAATCAAATTGTCGTTTTTTTCTCTTCTTTCCTTGCGAATAAAAAAAAGCTGCCGATTCTTCTGCGCCGATAATGAAGTGAAATTGAGTCTTTTTCTAATGAAAAGGCATAAAGAAAAAAGAAAAAAATCTTGTTTTTAGAATTCCGAATTAATTTTATTGTTCTGGAAGGAGTAACCTGAATTCTTGGTATACGCGTCCGGAAGTCATCCCCTCTTCAGGAAAACCTGTTTTCGGTTTTTGTGCTAGTACGGAACAAAAATAAGTATTCCAATCCAACCAAAAGGAATACGTGTATGGTCGTTTACCTCAATTGTCTCTCTTTTTCACATGGAGATAATCTGGAAGTTTATACGGCTGAACTATCCGAATAATTTAATATTCCAAAAACTGAGAAGCAATATTCTGGGAGCGGTGCTCCAGCACCATTTTTTATTCTCTTTTGCTTGCTTTCTTGGCCGAGAATAACTAGTGAACTAGAGTGAAAAGGAGCACATTGTTCCAAAAGGGGACATATTGTGTGTTGATGTTAACTATTGTAGAAATGTATATTGTGGTTAGAGAGCCCGATTTTTATACTGGTTCGAAATATTCAAAACTTGAACTGCAACATTCTTTGA</canonical>
            <polymorphic>TTCCTGGTTTTGACAACTTTGCTCATAGCTGAAGCGCTCCCCATTCGGATTAGTTTAGAACTCCCGAATCATCACGTCACATCCTCGAATCCTCTATCACAAAATCTGCTCACCATTTGAATTGTTCTTCACAAAGTCCCGCCTCCATTCCATGCAGTTTGTGTTGTGGTTCTCACTAAATCATCATGATAAACATCTGTATTTCCTTTGCTCTTTGCCGCCCATAAAAAGCGAGTAAAAGTAATGCTATTAGCTGTGGATCAAAAACCTTCGCGGTTTTTTTCGTTTCTTGACTCTGAAATATTTCCCCCTCAGGATGAGTCACAAGTTTCCCTCATCTCCTCTGCTTCTAAAAGAAACATGCACATCTTTTCACACCGTCAATCAAATTGTCGTTTTTTTCTCTTCTTTCCTTGCGAATAAAAAAAAGCTGCCGATTCTTCTGCGCCGATAATGAAGTGAAATTGAGTCTTTTTCTAATGAAAAGGCATAAAGAAAAMAGAAAAAAATCTTGTTTTTAGAATTCCGAATTAATTTTATTGTTCTGGAAGGAGTAACCTGAATTCTTGGTATACGCGTCCGGAAGTCATCCCCTCTTCAGGAAAACCTGTTTTCGGTTTTTGTGCTAGTACGGAACAAAAATAAGTATTCCAATCCAACCAAAAGGAATACGTGTATGGTCGTTTACCTCAATTGTCTCTCTTTTTCACATGGAGATAATCTGGAAGTTTATACGGCTGAACTATCCGAATAATTTAATATTCCAAAAACTGAGAAGCAATATTCTGGGAGCGGTGCTCCAGCACCATTTTTTATTCTCTTTTGCTTGCTTTCTTGGCCGAGAATAACTAGTGAACTAGAGTGAAAAGGAGCACATTGTTCCAAAAGGGGACATATTGTGTGTTGATGTTAACTATTGTAGAAATGTATATTGTGGTTAGAGAGCCCGATTTTTATACTGGTTCGAAATATTCAAAACTTGAACTGCAACATTCTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGGATGAGTCACAAGTTTC</pcr_primer_p1>
		<pcr_primer_p2>AGGTTACTCCTTCCAGAACAATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCAGGATGAGTCACAAGTTTCCCTCATCTCCTCTGCTTCTAAAAGAAACATGCACATCTTTTCACACCGTCAATCAAATTGTCGTTTTTTTCTCTTCTTTCCTTGCGAATAAAAAAAAGCTGCCGATTCTTCTGCGCCGATAATGAAGTGAAATTGAGTCTTTTTCTAATGAAAAGGCATAAAGAAAAAAGAAAAAAATCTTGTTTTTAGAATTCCGAATTAATTTTATTGTTCTGGAAGGAGTAACCT</canonical_amplicon>
		<polymorphic_amplicon>TCAGGATGAGTCACAAGTTTCCCTCATCTCCTCTGCTTCTAAAAGAAACATGCACATCTTTTCACACCGTCAATCAAATTGTCGTTTTTTTCTCTTCTTTCCTTGCGAATAAAAAAAAGCTGCCGATTCTTCTGCGCCGATAATGAAGTGAAATTGAGTCTTTTTCTAATGAAAAGGCATAAAGAAAAMAGAAAAAAATCTTGTTTTTAGAATTCCGAATTAATTTTATTGTTCTGGAAGGAGTAACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15131</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>19698</contig_pos>
        <strand>+</strand>
        <context>AATTCTTGGT[A/T]TACGCGTCCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTCCGAATTAATTTTATTGTTCTGGAAGGAGTAACCTGAATTCTTGGT</left_flank>
        <right_flank>TACGCGTCCGGAAGTCATCCCCTCTTCAGGAAAACCTGTTTTCGGTTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACGTCACATCCTCGAATCCTCTATCACAAAATCTGCTCACCATTTGAATTGTTCTTCACAAAGTCCCGCCTCCATTCCATGCAGTTTGTGTTGTGGTTCTCACTAAATCATCATGATAAACATCTGTATTTCCTTTGCTCTTTGCCGCCCATAAAAAGCGAGTAAAAGTAATGCTATTAGCTGTGGATCAAAAACCTTCGCGGTTTTTTTCGTTTCTTGACTCTGAAATATTTCCCCCTCAGGATGAGTCACAAGTTTCCCTCATCTCCTCTGCTTCTAAAAGAAACATGCACATCTTTTCACACCGTCAATCAAATTGTCGTTTTTTTCTCTTCTTTCCTTGCGAATAAAAAAAAGCTGCCGATTCTTCTGCGCCGATAATGAAGTGAAATTGAGTCTTTTTCTAATGAAAAGGCATAAAGAAAAAAGAAAAAAATCTTGTTTTTAGAATTCCGAATTAATTTTATTGTTCTGGAAGGAGTAACCTGAATTCTTGGTATACGCGTCCGGAAGTCATCCCCTCTTCAGGAAAACCTGTTTTCGGTTTTTGTGCTAGTACGGAACAAAAATAAGTATTCCAATCCAACCAAAAGGAATACGTGTATGGTCGTTTACCTCAATTGTCTCTCTTTTTCACATGGAGATAATCTGGAAGTTTATACGGCTGAACTATCCGAATAATTTAATATTCCAAAAACTGAGAAGCAATATTCTGGGAGCGGTGCTCCAGCACCATTTTTTATTCTCTTTTGCTTGCTTTCTTGGCCGAGAATAACTAGTGAACTAGAGTGAAAAGGAGCACATTGTTCCAAAAGGGGACATATTGTGTGTTGATGTTAACTATTGTAGAAATGTATATTGTGGTTAGAGAGCCCGATTTTTATACTGGTTCGAAATATTCAAAACTTGAACTGCAACATTCTTTGAATACAAAAAAAACAATGCAAAACTAGAATTTTTCATTGTTCGAATCTTTTTTTTCCATGGTCACAAGCAAAC</canonical>
            <polymorphic>CACGTCACATCCTCGAATCCTCTATCACAAAATCTGCTCACCATTTGAATTGTTCTTCACAAAGTCCCGCCTCCATTCCATGCAGTTTGTGTTGTGGTTCTCACTAAATCATCATGATAAACATCTGTATTTCCTTTGCTCTTTGCCGCCCATAAAAAGCGAGTAAAAGTAATGCTATTAGCTGTGGATCAAAAACCTTCGCGGTTTTTTTCGTTTCTTGACTCTGAAATATTTCCCCCTCAGGATGAGTCACAAGTTTCCCTCATCTCCTCTGCTTCTAAAAGAAACATGCACATCTTTTCACACCGTCAATCAAATTGTCGTTTTTTTCTCTTCTTTCCTTGCGAATAAAAAAAAGCTGCCGATTCTTCTGCGCCGATAATGAAGTGAAATTGAGTCTTTTTCTAATGAAAAGGCATAAAGAAAAAAGAAAAAAATCTTGTTTTTAGAATTCCGAATTAATTTTATTGTTCTGGAAGGAGTAACCTGAATTCTTGGTWTACGCGTCCGGAAGTCATCCCCTCTTCAGGAAAACCTGTTTTCGGTTTTTGTGCTAGTACGGAACAAAAATAAGTATTCCAATCCAACCAAAAGGAATACGTGTATGGTCGTTTACCTCAATTGTCTCTCTTTTTCACATGGAGATAATCTGGAAGTTTATACGGCTGAACTATCCGAATAATTTAATATTCCAAAAACTGAGAAGCAATATTCTGGGAGCGGTGCTCCAGCACCATTTTTTATTCTCTTTTGCTTGCTTTCTTGGCCGAGAATAACTAGTGAACTAGAGTGAAAAGGAGCACATTGTTCCAAAAGGGGACATATTGTGTGTTGATGTTAACTATTGTAGAAATGTATATTGTGGTTAGAGAGCCCGATTTTTATACTGGTTCGAAATATTCAAAACTTGAACTGCAACATTCTTTGAATACAAAAAAAACAATGCAAAACTAGAATTTTTCATTGTTCGAATCTTTTTTTTCCATGGTCACAAGCAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTATAC</site>
                <isoschizomers>
                    <enzyme>BssNAI</enzyme>
                    <enzyme>Bst1107I</enzyme>
                    <enzyme>BstZ17I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTTTTCACACCGTCAATC</pcr_primer_p1>
		<pcr_primer_p2>TACTAGCACAAAAACCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>ATCTTTTCACACCGTCAATCAAATTGTCGTTTTTTTCTCTTCTTTCCTTGCGAATAAAAAAAAGCTGCCGATTCTTCTGCGCCGATAATGAAGTGAAATTGAGTCTTTTTCTAATGAAAAGGCATAAAGAAAAAAGAAAAAAATCTTGTTTTTAGAATTCCGAATTAATTTTATTGTTCTGGAAGGAGTAACCTGAATTCTTGGTATACGCGTCCGGAAGTCATCCCCTCTTCAGGAAAACCTGTTTTCGGTTTTTGTGCTAGTA</canonical_amplicon>
		<polymorphic_amplicon>ATCTTTTCACACCGTCAATCAAATTGTCGTTTTTTTCTCTTCTTTCCTTGCGAATAAAAAAAAGCTGCCGATTCTTCTGCGCCGATAATGAAGTGAAATTGAGTCTTTTTCTAATGAAAAGGCATAAAGAAAAAAGAAAAAAATCTTGTTTTTAGAATTCCGAATTAATTTTATTGTTCTGGAAGGAGTAACCTGAATTCTTGGTWTACGCGTCCGGAAGTCATCCCCTCTTCAGGAAAACCTGTTTTCGGTTTTTGTGCTAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15132</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>19828</contig_pos>
        <strand>+</strand>
        <context>AATTGTCTCT[C/G]TTTTTCACAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAATCCAACCAAAAGGAATACGTGTATGGTCGTTTACCTCAATTGTCTCT</left_flank>
        <right_flank>TTTTTCACATGGAGATAATCTGGAAGTTTATACGGCTGAACTATCCGAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCTTTGCTCTTTGCCGCCCATAAAAAGCGAGTAAAAGTAATGCTATTAGCTGTGGATCAAAAACCTTCGCGGTTTTTTTCGTTTCTTGACTCTGAAATATTTCCCCCTCAGGATGAGTCACAAGTTTCCCTCATCTCCTCTGCTTCTAAAAGAAACATGCACATCTTTTCACACCGTCAATCAAATTGTCGTTTTTTTCTCTTCTTTCCTTGCGAATAAAAAAAAGCTGCCGATTCTTCTGCGCCGATAATGAAGTGAAATTGAGTCTTTTTCTAATGAAAAGGCATAAAGAAAAAAGAAAAAAATCTTGTTTTTAGAATTCCGAATTAATTTTATTGTTCTGGAAGGAGTAACCTGAATTCTTGGTATACGCGTCCGGAAGTCATCCCCTCTTCAGGAAAACCTGTTTTCGGTTTTTGTGCTAGTACGGAACAAAAATAAGTATTCCAATCCAACCAAAAGGAATACGTGTATGGTCGTTTACCTCAATTGTCTCTCTTTTTCACATGGAGATAATCTGGAAGTTTATACGGCTGAACTATCCGAATAATTTAATATTCCAAAAACTGAGAAGCAATATTCTGGGAGCGGTGCTCCAGCACCATTTTTTATTCTCTTTTGCTTGCTTTCTTGGCCGAGAATAACTAGTGAACTAGAGTGAAAAGGAGCACATTGTTCCAAAAGGGGACATATTGTGTGTTGATGTTAACTATTGTAGAAATGTATATTGTGGTTAGAGAGCCCGATTTTTATACTGGTTCGAAATATTCAAAACTTGAACTGCAACATTCTTTGAATACAAAAAAAACAATGCAAAACTAGAATTTTTCATTGTTCGAATCTTTTTTTTCCATGGTCACAAGCAAACGTCATTGTGTAACACCTCCAGCAGTAATCTCAGAAATAACTGAATAATATCCGGAAATGCAATATTTGGATTCAATAATGCTTTTTATTGCCTTTTTATCCGAATTCTAGAAATTCTTTCTTTTCTTTTT</canonical>
            <polymorphic>TTCCTTTGCTCTTTGCCGCCCATAAAAAGCGAGTAAAAGTAATGCTATTAGCTGTGGATCAAAAACCTTCGCGGTTTTTTTCGTTTCTTGACTCTGAAATATTTCCCCCTCAGGATGAGTCACAAGTTTCCCTCATCTCCTCTGCTTCTAAAAGAAACATGCACATCTTTTCACACCGTCAATCAAATTGTCGTTTTTTTCTCTTCTTTCCTTGCGAATAAAAAAAAGCTGCCGATTCTTCTGCGCCGATAATGAAGTGAAATTGAGTCTTTTTCTAATGAAAAGGCATAAAGAAAAAAGAAAAAAATCTTGTTTTTAGAATTCCGAATTAATTTTATTGTTCTGGAAGGAGTAACCTGAATTCTTGGTATACGCGTCCGGAAGTCATCCCCTCTTCAGGAAAACCTGTTTTCGGTTTTTGTGCTAGTACGGAACAAAAATAAGTATTCCAATCCAACCAAAAGGAATACGTGTATGGTCGTTTACCTCAATTGTCTCTSTTTTTCACATGGAGATAATCTGGAAGTTTATACGGCTGAACTATCCGAATAATTTAATATTCCAAAAACTGAGAAGCAATATTCTGGGAGCGGTGCTCCAGCACCATTTTTTATTCTCTTTTGCTTGCTTTCTTGGCCGAGAATAACTAGTGAACTAGAGTGAAAAGGAGCACATTGTTCCAAAAGGGGACATATTGTGTGTTGATGTTAACTATTGTAGAAATGTATATTGTGGTTAGAGAGCCCGATTTTTATACTGGTTCGAAATATTCAAAACTTGAACTGCAACATTCTTTGAATACAAAAAAAACAATGCAAAACTAGAATTTTTCATTGTTCGAATCTTTTTTTTCCATGGTCACAAGCAAACGTCATTGTGTAACACCTCCAGCAGTAATCTCAGAAATAACTGAATAATATCCGGAAATGCAATATTTGGATTCAATAATGCTTTTTATTGCCTTTTTATCCGAATTCTAGAAATTCTTTCTTTTCTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTGTTCTGGAAGGAGTAACCT</pcr_primer_p1>
		<pcr_primer_p2>AGAATATTGCTTCTCAGTTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATTGTTCTGGAAGGAGTAACCTGAATTCTTGGTATACGCGTCCGGAAGTCATCCCCTCTTCAGGAAAACCTGTTTTCGGTTTTTGTGCTAGTACGGAACAAAAATAAGTATTCCAATCCAACCAAAAGGAATACGTGTATGGTCGTTTACCTCAATTGTCTCTCTTTTTCACATGGAGATAATCTGGAAGTTTATACGGCTGAACTATCCGAATAATTTAATATTCCAAAAACTGAGAAGCAATATTCT</canonical_amplicon>
		<polymorphic_amplicon>TATTGTTCTGGAAGGAGTAACCTGAATTCTTGGTATACGCGTCCGGAAGTCATCCCCTCTTCAGGAAAACCTGTTTTCGGTTTTTGTGCTAGTACGGAACAAAAATAAGTATTCCAATCCAACCAAAAGGAATACGTGTATGGTCGTTTACCTCAATTGTCTCTSTTTTTCACATGGAGATAATCTGGAAGTTTATACGGCTGAACTATCCGAATAATTTAATATTCCAAAAACTGAGAAGCAATATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15133</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>19925</contig_pos>
        <strand>+</strand>
        <context>GGAGCGGTGC[C/T]CCAGCACCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAATAATTTAATATTCCAAAAACTGAGAAGCAATATTCTGGGAGCGGTGC</left_flank>
        <right_flank>CCAGCACCATTTTTTATTCTCTTTTGCTTGCTTTCTTGGCCGAGAATAAC</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATATTTCCCCCTCAGGATGAGTCACAAGTTTCCCTCATCTCCTCTGCTTCTAAAAGAAACATGCACATCTTTTCACACCGTCAATCAAATTGTCGTTTTTTTCTCTTCTTTCCTTGCGAATAAAAAAAAGCTGCCGATTCTTCTGCGCCGATAATGAAGTGAAATTGAGTCTTTTTCTAATGAAAAGGCATAAAGAAAAAAGAAAAAAATCTTGTTTTTAGAATTCCGAATTAATTTTATTGTTCTGGAAGGAGTAACCTGAATTCTTGGTATACGCGTCCGGAAGTCATCCCCTCTTCAGGAAAACCTGTTTTCGGTTTTTGTGCTAGTACGGAACAAAAATAAGTATTCCAATCCAACCAAAAGGAATACGTGTATGGTCGTTTACCTCAATTGTCTCTCTTTTTCACATGGAGATAATCTGGAAGTTTATACGGCTGAACTATCCGAATAATTTAATATTCCAAAAACTGAGAAGCAATATTCTGGGAGCGGTGCTCCAGCACCATTTTTTATTCTCTTTTGCTTGCTTTCTTGGCCGAGAATAACTAGTGAACTAGAGTGAAAAGGAGCACATTGTTCCAAAAGGGGACATATTGTGTGTTGATGTTAACTATTGTAGAAATGTATATTGTGGTTAGAGAGCCCGATTTTTATACTGGTTCGAAATATTCAAAACTTGAACTGCAACATTCTTTGAATACAAAAAAAACAATGCAAAACTAGAATTTTTCATTGTTCGAATCTTTTTTTTCCATGGTCACAAGCAAACGTCATTGTGTAACACCTCCAGCAGTAATCTCAGAAATAACTGAATAATATCCGGAAATGCAATATTTGGATTCAATAATGCTTTTTATTGCCTTTTTATCCGAATTCTAGAAATTCTTTCTTTTCTTTTTTCTTTCTCAAGATTTTGCTAAATTTGGAAATATAGAGTACCCCTATTAATTCACACACACACACACACACACTTTAGCATACTTTTGTTGGAATTGG</canonical>
            <polymorphic>AATATTTCCCCCTCAGGATGAGTCACAAGTTTCCCTCATCTCCTCTGCTTCTAAAAGAAACATGCACATCTTTTCACACCGTCAATCAAATTGTCGTTTTTTTCTCTTCTTTCCTTGCGAATAAAAAAAAGCTGCCGATTCTTCTGCGCCGATAATGAAGTGAAATTGAGTCTTTTTCTAATGAAAAGGCATAAAGAAAAAAGAAAAAAATCTTGTTTTTAGAATTCCGAATTAATTTTATTGTTCTGGAAGGAGTAACCTGAATTCTTGGTATACGCGTCCGGAAGTCATCCCCTCTTCAGGAAAACCTGTTTTCGGTTTTTGTGCTAGTACGGAACAAAAATAAGTATTCCAATCCAACCAAAAGGAATACGTGTATGGTCGTTTACCTCAATTGTCTCTCTTTTTCACATGGAGATAATCTGGAAGTTTATACGGCTGAACTATCCGAATAATTTAATATTCCAAAAACTGAGAAGCAATATTCTGGGAGCGGTGCYCCAGCACCATTTTTTATTCTCTTTTGCTTGCTTTCTTGGCCGAGAATAACTAGTGAACTAGAGTGAAAAGGAGCACATTGTTCCAAAAGGGGACATATTGTGTGTTGATGTTAACTATTGTAGAAATGTATATTGTGGTTAGAGAGCCCGATTTTTATACTGGTTCGAAATATTCAAAACTTGAACTGCAACATTCTTTGAATACAAAAAAAACAATGCAAAACTAGAATTTTTCATTGTTCGAATCTTTTTTTTCCATGGTCACAAGCAAACGTCATTGTGTAACACCTCCAGCAGTAATCTCAGAAATAACTGAATAATATCCGGAAATGCAATATTTGGATTCAATAATGCTTTTTATTGCCTTTTTATCCGAATTCTAGAAATTCTTTCTTTTCTTTTTTCTTTCTCAAGATTTTGCTAAATTTGGAAATATAGAGTACCCCTATTAATTCACACACACACACACACACACTTTAGCATACTTTTGTTGGAATTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 425 75</canonical_bands>
                <polymorphic_bands>575 425</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>500 352 75 73</canonical_bands>
                <polymorphic_bands>575 352 73</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATGGAGATAATCTGGAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>GTATAAAAATCGGGCTCTCTAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACATGGAGATAATCTGGAAGTTTATACGGCTGAACTATCCGAATAATTTAATATTCCAAAAACTGAGAAGCAATATTCTGGGAGCGGTGCTCCAGCACCATTTTTTATTCTCTTTTGCTTGCTTTCTTGGCCGAGAATAACTAGTGAACTAGAGTGAAAAGGAGCACATTGTTCCAAAAGGGGACATATTGTGTGTTGATGTTAACTATTGTAGAAATGTATATTGTGGTTAGAGAGCCCGATTTTTATAC</canonical_amplicon>
		<polymorphic_amplicon>ACATGGAGATAATCTGGAAGTTTATACGGCTGAACTATCCGAATAATTTAATATTCCAAAAACTGAGAAGCAATATTCTGGGAGCGGTGCYCCAGCACCATTTTTTATTCTCTTTTGCTTGCTTTCTTGGCCGAGAATAACTAGTGAACTAGAGTGAAAAGGAGCACATTGTTCCAAAAGGGGACATATTGTGTGTTGATGTTAACTATTGTAGAAATGTATATTGTGGTTAGAGAGCCCGATTTTTATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15134</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>21091</contig_pos>
        <strand>+</strand>
        <context>CTTCTTCTTC[C/T]ATTTGTTGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAGGCCGAAAATAGGCGGAGCCTCCAACCAAAAGCTTTCCTTCTTCTTC</left_flank>
        <right_flank>ATTTGTTGTTGAAGCAAGAGATCCTGAGCATCATATACCCCCTTGGGGTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGATACAATCTAGAAATATGATAGGTCAAATACAGTGTATCCTTTCAACCAGACTTCGAGAAAAACAAAATGACCTAGCAAACATACCAGATGAACATCAGGCCATTTGCAGGTCATTTCTACACGGTGGCCCAGAAAACACAACCTGCAAAAGTTAGGCCACCATGTCAAAACGACCTAAAAACACACTAGGGTCATGTTGGGCCATTTCTGGTTCATAAAAATGAAGATCTAGAAAACCCAACTAGAAAAAGTTAGACCATCATGTAAAAATGACCAAAAAACAAAAAACGTACATGCATTCAAATTTTTCGAGAATCAATTACATTTCATCATAGCCGGAACCGCTACTGATAACTTTTTTTTAAACGTCTCTATATTCCGATACTCGGATTCTTTCTCATTTTCTCTTCTCCCTTGTCCCTAACTCCACCCCTTTCGTTTTGGGGAGGCCGAAAATAGGCGGAGCCTCCAACCAAAAGCTTTCCTTCTTCTTCTATTTGTTGTTGAAGCAAGAGATCCTGAGCATCATATACCCCCTTGGGGTGTATTATCTTCAACCCACGCAAATTTTTCATGATATTTACCCTTGAGTTTTTTTTGTTGAGATAGTCTTTCGTCCTTGAGTTCCAAAGTTCAGAAACTCTTATAAATTACTTTTCCAACTTACAGACCGCCTTTCTCAAACTCCGTGGTGCTATTTCTCCATTTGGTTGAAGAGAAAAAAAAATGAAGATGAACACTTTGGTGCTTTTGGCTATCTGCGTGGCATGCGCCTGTGCTGCACCAAATCCAGCACCACAAGGTGCTGCTCCAGAAGCCAATCGAGGAGACTGGGCTGCAATCTATGAGTTTGAGGTCAGCCATTCTATCATAAAGAATATCAAAACATTACCTCTAACTGAGAAGCTCTTGTCAAATATTTGCCGTGCTTTAGCTGATGTAAGGAGTAACCAAGAGACTGTTTGGGCAGCCTCCCATAATTTAGGCTGAAACCC</canonical>
            <polymorphic>ATAGATACAATCTAGAAATATGATAGGTCAAATACAGTGTATCCTTTCAACCAGACTTCGAGAAAAACAAAATGACCTAGCAAACATACCAGATGAACATCAGGCCATTTGCAGGTCATTTCTACACGGTGGCCCAGAAAACACAACCTGCAAAAGTTAGGCCACCATGTCAAAACGACCTAAAAACACACTAGGGTCATGTTGGGCCATTTCTGGTTCATAAAAATGAAGATCTAGAAAACCCAACTAGAAAAAGTTAGACCATCATGTAAAAATGACCAAAAAACAAAAAACGTACATGCATTCAAATTTTTCGAGAATCAATTACATTTCATCATAGCCGGAACCGCTACTGATAACTTTTTTTTAAACGTCTCTATATTCCGATACTCGGATTCTTTCTCATTTTCTCTTCTCCCTTGTCCCTAACTCCACCCCTTTCGTTTTGGGGAGGCCGAAAATAGGCGGAGCCTCCAACCAAAAGCTTTCCTTCTTCTTCYATTTGTTGTTGAAGCAAGAGATCCTGAGCATCATATACCCCCTTGGGGTGTATTATCTTCAACCCACGCAAATTTTTCATGATATTTACCCTTGAGTTTTTTTTGTTGAGATAGTCTTTCGTCCTTGAGTTCCAAAGTTCAGAAACTCTTATAAATTACTTTTCCAACTTACAGACCGCCTTTCTCAAACTCCGTGGTGCTATTTCTCCATTTGGTTGAAGAGAAAAAAAAATGAAGATGAACACTTTGGTGCTTTTGGCTATCTGCGTGGCATGCGCCTGTGCTGCACCAAATCCAGCACCACAAGGTGCTGCTCCAGAAGCCAATCGAGGAGACTGGGCTGCAATCTATGAGTTTGAGGTCAGCCATTCTATCATAAAGAATATCAAAACATTACCTCTAACTGAGAAGCTCTTGTCAAATATTTGCCGTGCTTTAGCTGATGTAAGGAGTAACCAAGAGACTGTTTGGGCAGCCTCCCATAATTTAGGCTGAAACCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTTCTCATTTTCTCTTCTCC</pcr_primer_p1>
		<pcr_primer_p2>TTTCTGAACTTTGGAACTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTTTCTCATTTTCTCTTCTCCCTTGTCCCTAACTCCACCCCTTTCGTTTTGGGGAGGCCGAAAATAGGCGGAGCCTCCAACCAAAAGCTTTCCTTCTTCTTCTATTTGTTGTTGAAGCAAGAGATCCTGAGCATCATATACCCCCTTGGGGTGTATTATCTTCAACCCACGCAAATTTTTCATGATATTTACCCTTGAGTTTTTTTTGTTGAGATAGTCTTTCGTCCTTGAGTTCCAAAGTTCAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TTCTTTCTCATTTTCTCTTCTCCCTTGTCCCTAACTCCACCCCTTTCGTTTTGGGGAGGCCGAAAATAGGCGGAGCCTCCAACCAAAAGCTTTCCTTCTTCTTCYATTTGTTGTTGAAGCAAGAGATCCTGAGCATCATATACCCCCTTGGGGTGTATTATCTTCAACCCACGCAAATTTTTCATGATATTTACCCTTGAGTTTTTTTTGTTGAGATAGTCTTTCGTCCTTGAGTTCCAAAGTTCAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15135</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>21019</contig_pos>
        <strand>+</strand>
        <context>CCTTGTCCCT[A/G]ACTCCACCCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATATTCCGATACTCGGATTCTTTCTCATTTTCTCTTCTCCCTTGTCCCT</left_flank>
        <right_flank>ACTCCACCCCTTTCGTTTTGGGGAGGCCGAAAATAGGCGGAGCCTCCAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGCGTATTCAGTAGTTTGGGGGCGAGAAATGTTTTCAGACAGTTAAAAAATTTATATCTGAGTTTCCGGAAATAGATACAATCTAGAAATATGATAGGTCAAATACAGTGTATCCTTTCAACCAGACTTCGAGAAAAACAAAATGACCTAGCAAACATACCAGATGAACATCAGGCCATTTGCAGGTCATTTCTACACGGTGGCCCAGAAAACACAACCTGCAAAAGTTAGGCCACCATGTCAAAACGACCTAAAAACACACTAGGGTCATGTTGGGCCATTTCTGGTTCATAAAAATGAAGATCTAGAAAACCCAACTAGAAAAAGTTAGACCATCATGTAAAAATGACCAAAAAACAAAAAACGTACATGCATTCAAATTTTTCGAGAATCAATTACATTTCATCATAGCCGGAACCGCTACTGATAACTTTTTTTTAAACGTCTCTATATTCCGATACTCGGATTCTTTCTCATTTTCTCTTCTCCCTTGTCCCTAACTCCACCCCTTTCGTTTTGGGGAGGCCGAAAATAGGCGGAGCCTCCAACCAAAAGCTTTCCTTCTTCTTCTATTTGTTGTTGAAGCAAGAGATCCTGAGCATCATATACCCCCTTGGGGTGTATTATCTTCAACCCACGCAAATTTTTCATGATATTTACCCTTGAGTTTTTTTTGTTGAGATAGTCTTTCGTCCTTGAGTTCCAAAGTTCAGAAACTCTTATAAATTACTTTTCCAACTTACAGACCGCCTTTCTCAAACTCCGTGGTGCTATTTCTCCATTTGGTTGAAGAGAAAAAAAAATGAAGATGAACACTTTGGTGCTTTTGGCTATCTGCGTGGCATGCGCCTGTGCTGCACCAAATCCAGCACCACAAGGTGCTGCTCCAGAAGCCAATCGAGGAGACTGGGCTGCAATCTATGAGTTTGAGGTCAGCCATTCTATCATAAAGAATATCAAAACATTACCTCTAACTGAGAAGCTCTTGTCAAATATTTG</canonical>
            <polymorphic>TAGCGTATTCAGTAGTTTGGGGGCGAGAAATGTTTTCAGACAGTTAAAAAATTTATATCTGAGTTTCCGGAAATAGATACAATCTAGAAATATGATAGGTCAAATACAGTGTATCCTTTCAACCAGACTTCGAGAAAAACAAAATGACCTAGCAAACATACCAGATGAACATCAGGCCATTTGCAGGTCATTTCTACACGGTGGCCCAGAAAACACAACCTGCAAAAGTTAGGCCACCATGTCAAAACGACCTAAAAACACACTAGGGTCATGTTGGGCCATTTCTGGTTCATAAAAATGAAGATCTAGAAAACCCAACTAGAAAAAGTTAGACCATCATGTAAAAATGACCAAAAAACAAAAAACGTACATGCATTCAAATTTTTCGAGAATCAATTACATTTCATCATAGCCGGAACCGCTACTGATAACTTTTTTTTAAACGTCTCTATATTCCGATACTCGGATTCTTTCTCATTTTCTCTTCTCCCTTGTCCCTRACTCCACCCCTTTCGTTTTGGGGAGGCCGAAAATAGGCGGAGCCTCCAACCAAAAGCTTTCCTTCTTCTTCTATTTGTTGTTGAAGCAAGAGATCCTGAGCATCATATACCCCCTTGGGGTGTATTATCTTCAACCCACGCAAATTTTTCATGATATTTACCCTTGAGTTTTTTTTGTTGAGATAGTCTTTCGTCCTTGAGTTCCAAAGTTCAGAAACTCTTATAAATTACTTTTCCAACTTACAGACCGCCTTTCTCAAACTCCGTGGTGCTATTTCTCCATTTGGTTGAAGAGAAAAAAAAATGAAGATGAACACTTTGGTGCTTTTGGCTATCTGCGTGGCATGCGCCTGTGCTGCACCAAATCCAGCACCACAAGGTGCTGCTCCAGAAGCCAATCGAGGAGACTGGGCTGCAATCTATGAGTTTGAGGTCAGCCATTCTATCATAAAGAATATCAAAACATTACCTCTAACTGAGAAGCTCTTGTCAAATATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAACCGCTACTGATAACTTT</pcr_primer_p1>
		<pcr_primer_p2>TCAAGGGTAAATATCATGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GGAACCGCTACTGATAACTTTTTTTTAAACGTCTCTATATTCCGATACTCGGATTCTTTCTCATTTTCTCTTCTCCCTTGTCCCTAACTCCACCCCTTTCGTTTTGGGGAGGCCGAAAATAGGCGGAGCCTCCAACCAAAAGCTTTCCTTCTTCTTCTATTTGTTGTTGAAGCAAGAGATCCTGAGCATCATATACCCCCTTGGGGTGTATTATCTTCAACCCACGCAAATTTTTCATGATATTTACCCTTGA</canonical_amplicon>
		<polymorphic_amplicon>GGAACCGCTACTGATAACTTTTTTTTAAACGTCTCTATATTCCGATACTCGGATTCTTTCTCATTTTCTCTTCTCCCTTGTCCCTRACTCCACCCCTTTCGTTTTGGGGAGGCCGAAAATAGGCGGAGCCTCCAACCAAAAGCTTTCCTTCTTCTTCTATTTGTTGTTGAAGCAAGAGATCCTGAGCATCATATACCCCCTTGGGGTGTATTATCTTCAACCCACGCAAATTTTTCATGATATTTACCCTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15136</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>20933</contig_pos>
        <strand>+</strand>
        <context>TCATCATAGC[C/T]GGAACCGCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACGTACATGCATTCAAATTTTTCGAGAATCAATTACATTTCATCATAGC</left_flank>
        <right_flank>GGAACCGCTACTGATAACTTTTTTTTAAACGTCTCTATATTCCGATACTC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCCTAGTATGATTTTATGGGGTTCCATTAGTGCGTAATTCTTTACTTCTGGAGTCCAACGCTTCTGGAAAACTCCACGCCATCTATAGCGTATTCAGTAGTTTGGGGGCGAGAAATGTTTTCAGACAGTTAAAAAATTTATATCTGAGTTTCCGGAAATAGATACAATCTAGAAATATGATAGGTCAAATACAGTGTATCCTTTCAACCAGACTTCGAGAAAAACAAAATGACCTAGCAAACATACCAGATGAACATCAGGCCATTTGCAGGTCATTTCTACACGGTGGCCCAGAAAACACAACCTGCAAAAGTTAGGCCACCATGTCAAAACGACCTAAAAACACACTAGGGTCATGTTGGGCCATTTCTGGTTCATAAAAATGAAGATCTAGAAAACCCAACTAGAAAAAGTTAGACCATCATGTAAAAATGACCAAAAAACAAAAAACGTACATGCATTCAAATTTTTCGAGAATCAATTACATTTCATCATAGCCGGAACCGCTACTGATAACTTTTTTTTAAACGTCTCTATATTCCGATACTCGGATTCTTTCTCATTTTCTCTTCTCCCTTGTCCCTAACTCCACCCCTTTCGTTTTGGGGAGGCCGAAAATAGGCGGAGCCTCCAACCAAAAGCTTTCCTTCTTCTTCTATTTGTTGTTGAAGCAAGAGATCCTGAGCATCATATACCCCCTTGGGGTGTATTATCTTCAACCCACGCAAATTTTTCATGATATTTACCCTTGAGTTTTTTTTGTTGAGATAGTCTTTCGTCCTTGAGTTCCAAAGTTCAGAAACTCTTATAAATTACTTTTCCAACTTACAGACCGCCTTTCTCAAACTCCGTGGTGCTATTTCTCCATTTGGTTGAAGAGAAAAAAAAATGAAGATGAACACTTTGGTGCTTTTGGCTATCTGCGTGGCATGCGCCTGTGCTGCACCAAATCCAGCACCACAAGGTGCTGCTCCAGAAGCCAATCGAGGAGACTGGGCT</canonical>
            <polymorphic>GGCCTAGTATGATTTTATGGGGTTCCATTAGTGCGTAATTCTTTACTTCTGGAGTCCAACGCTTCTGGAAAACTCCACGCCATCTATAGCGTATTCAGTAGTTTGGGGGCGAGAAATGTTTTCAGACAGTTAAAAAATTTATATCTGAGTTTCCGGAAATAGATACAATCTAGAAATATGATAGGTCAAATACAGTGTATCCTTTCAACCAGACTTCGAGAAAAACAAAATGACCTAGCAAACATACCAGATGAACATCAGGCCATTTGCAGGTCATTTCTACACGGTGGCCCAGAAAACACAACCTGCAAAAGTTAGGCCACCATGTCAAAACGACCTAAAAACACACTAGGGTCATGTTGGGCCATTTCTGGTTCATAAAAATGAAGATCTAGAAAACCCAACTAGAAAAAGTTAGACCATCATGTAAAAATGACCAAAAAACAAAAAACGTACATGCATTCAAATTTTTCGAGAATCAATTACATTTCATCATAGCYGGAACCGCTACTGATAACTTTTTTTTAAACGTCTCTATATTCCGATACTCGGATTCTTTCTCATTTTCTCTTCTCCCTTGTCCCTAACTCCACCCCTTTCGTTTTGGGGAGGCCGAAAATAGGCGGAGCCTCCAACCAAAAGCTTTCCTTCTTCTTCTATTTGTTGTTGAAGCAAGAGATCCTGAGCATCATATACCCCCTTGGGGTGTATTATCTTCAACCCACGCAAATTTTTCATGATATTTACCCTTGAGTTTTTTTTGTTGAGATAGTCTTTCGTCCTTGAGTTCCAAAGTTCAGAAACTCTTATAAATTACTTTTCCAACTTACAGACCGCCTTTCTCAAACTCCGTGGTGCTATTTCTCCATTTGGTTGAAGAGAAAAAAAAATGAAGATGAACACTTTGGTGCTTTTGGCTATCTGCGTGGCATGCGCCTGTGCTGCACCAAATCCAGCACCACAAGGTGCTGCTCCAGAAGCCAATCGAGGAGACTGGGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 346 153</canonical_bands>
                <polymorphic_bands>847 153</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>275 260 134 114 63 45 29 28 18 16 14 2 2</canonical_bands>
                <polymorphic_bands>275 260 248 63 45 29 28 18 16 14 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAGACTTCGAGAAAAACA</pcr_primer_p1>
		<pcr_primer_p2>ATCCGAGTATCGGAATATAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>ACCAGACTTCGAGAAAAACAAAATGACCTAGCAAACATACCAGATGAACATCAGGCCATTTGCAGGTCATTTCTACACGGTGGCCCAGAAAACACAACCTGCAAAAGTTAGGCCACCATGTCAAAACGACCTAAAAACACACTAGGGTCATGTTGGGCCATTTCTGGTTCATAAAAATGAAGATCTAGAAAACCCAACTAGAAAAAGTTAGACCATCATGTAAAAATGACCAAAAAACAAAAAACGTACATGCATTCAAATTTTTCGAGAATCAATTACATTTCATCATAGCCGGAACCGCTACTGATAACTTTTTTTTAAACGTCTCTATATTCCGATACTCGGAT</canonical_amplicon>
		<polymorphic_amplicon>ACCAGACTTCGAGAAAAACAAAATGACCTAGCAAACATACCAGATGAACATCAGGCCATTTGCAGGTCATTTCTACACGGTGGCCCAGAAAACACAACCTGCAAAAGTTAGGCCACCATGTCAAAACGACCTAAAAACACACTAGGGTCATGTTGGGCCATTTCTGGTTCATAAAAATGAAGATCTAGAAAACCCAACTAGAAAAAGTTAGACCATCATGTAAAAATGACCAAAAAACAAAAAACGTACATGCATTCAAATTTTTCGAGAATCAATTACATTTCATCATAGCYGGAACCGCTACTGATAACTTTTTTTTAAACGTCTCTATATTCCGATACTCGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15137</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>23380</contig_pos>
        <strand>+</strand>
        <context>TATAATTGCT[A/G]GCCAGCCGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGACGTGATTCGTGCCTGGATTCTGAACCAGACATTCCTTATAATTGCT</left_flank>
        <right_flank>GCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGTCGTTAGACAATTTCCGAAACTAACAATATCCCAACGAGTACCTTCTTTTTTACAGCCAATTTCTTTGTTATCTGAGTAAATTATTTTCAAACAAACAAGGCTTATTCTATTGTATGTTTTTGCCCATTCTCTTCAAATTGATCACACTTTTTTAATGCTTCCCCTCCTGTTTCCATCAGAATCCATTTTTCCTGTGTGCGCAATGATTCCGCCGCCATTTCTATTCTTTCAAGAGAATAAAGTGTTTTGTTAGACACTATCCTAAATTAAAGAACCAGAAGAGAGCAATAATAACTAGATTCGTTTTGAAAGAAAACACAGGAAATTCGACACCAACACCTCCTACGCATTGTATTGGTTACAAATGAATAATAAGATCACGGAAGTGTTGGGTGCAGAAAAGGCTAGAAAAAAAATTAATTGAGAGCTGTGGGAAGCAAATGAGATGACGTGATTCGTGCCTGGATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTACATGGAAGTTCGTTAACAATTCAATCATGACAATTTTCCCAGTAAATAAGGTTTCGAATACTAGGAACTCTGACGAATGACATAGAAGTCTCATTTCCATTCTAGGTGGTCAAAAAAGAACTGATAAATCACAAAAAACAAAAAAAAACACGTCAAAGTTGAATCTCCATTACGAGAATTGTGTTCGATTAGGGAGAAAAAAAGAAAATTTAGGAAATTGGGTTTTGAAATTTTTTTCCCCAATAAAACTCAACGATTAAAACCTCTATGAATATGAACGT</canonical>
            <polymorphic>ACGTCGTTAGACAATTTCCGAAACTAACAATATCCCAACGAGTACCTTCTTTTTTACAGCCAATTTCTTTGTTATCTGAGTAAATTATTTTCAAACAAACAAGGCTTATTCTATTGTATGTTTTTGCCCATTCTCTTCAAATTGATCACACTTTTTTAATGCTTCCCCTCCTGTTTCCATCAGAATCCATTTTTCCTGTGTGCGCAATGATTCCGCCGCCATTTCTATTCTTTCAAGAGAATAAAGTGTTTTGTTAGACACTATCCTAAATTAAAGAACCAGAAGAGAGCAATAATAACTAGATTCGTTTTGAAAGAAAACACAGGAAATTCGACACCAACACCTCCTACGCATTGTATTGGTTACAAATGAATAATAAGATCACGGAAGTGTTGGGTGCAGAAAAGGCTAGAAAAAAAATTAATTGAGAGCTGTGGGAAGCAAATGAGATGACGTGATTCGTGCCTGGATTCTGAACCAGACATTCCTTATAATTGCTRGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTACATGGAAGTTCGTTAACAATTCAATCATGACAATTTTCCCAGTAAATAAGGTTTCGAATACTAGGAACTCTGACGAATGACATAGAAGTCTCATTTCCATTCTAGGTGGTCAAAAAAGAACTGATAAATCACAAAAAACAAAAAAAAACACGTCAAAGTTGAATCTCCATTACGAGAATTGTGTTCGATTAGGGAGAAAAAAAGAAAATTTAGGAAATTGGGTTTTGAAATTTTTTTCCCCAATAAAACTCAACGATTAAAACCTCTATGAATATGAACGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCTAGC</site>
                <isoschizomers>
                    <enzyme>AsuNHI</enzyme>
                    <enzyme>BmtI</enzyme>
                    <enzyme>NheI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>299 282 179 110 89 41</canonical_bands>
                <polymorphic_bands>371 299 179 110 41</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>371 304 70 70 59 54 45 23 4</canonical_bands>
                <polymorphic_bands>371 304 74 70 59 54 45 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGTTACAAATGAATAATAAGATCA</pcr_primer_p1>
		<pcr_primer_p2>TCCCATATAAATACTTTGATAGACTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGGTTACAAATGAATAATAAGATCACGGAAGTGTTGGGTGCAGAAAAGGCTAGAAAAAAAATTAATTGAGAGCTGTGGGAAGCAAATGAGATGACGTGATTCGTGCCTGGATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGA</canonical_amplicon>
		<polymorphic_amplicon>TGGTTACAAATGAATAATAAGATCACGGAAGTGTTGGGTGCAGAAAAGGCTAGAAAAAAAATTAATTGAGAGCTGTGGGAAGCAAATGAGATGACGTGATTCGTGCCTGGATTCTGAACCAGACATTCCTTATAATTGCTRGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15138</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>23412</contig_pos>
        <strand>+</strand>
        <context>GTACAGTCTG[A/G]TTTYTGATAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTG</left_flank>
        <right_flank>TTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCCAACGAGTACCTTCTTTTTTACAGCCAATTTCTTTGTTATCTGAGTAAATTATTTTCAAACAAACAAGGCTTATTCTATTGTATGTTTTTGCCCATTCTCTTCAAATTGATCACACTTTTTTAATGCTTCCCCTCCTGTTTCCATCAGAATCCATTTTTCCTGTGTGCGCAATGATTCCGCCGCCATTTCTATTCTTTCAAGAGAATAAAGTGTTTTGTTAGACACTATCCTAAATTAAAGAACCAGAAGAGAGCAATAATAACTAGATTCGTTTTGAAAGAAAACACAGGAAATTCGACACCAACACCTCCTACGCATTGTATTGGTTACAAATGAATAATAAGATCACGGAAGTGTTGGGTGCAGAAAAGGCTAGAAAAAAAATTAATTGAGAGCTGTGGGAAGCAAATGAGATGACGTGATTCGTGCCTGGATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTACATGGAAGTTCGTTAACAATTCAATCATGACAATTTTCCCAGTAAATAAGGTTTCGAATACTAGGAACTCTGACGAATGACATAGAAGTCTCATTTCCATTCTAGGTGGTCAAAAAAGAACTGATAAATCACAAAAAACAAAAAAAAACACGTCAAAGTTGAATCTCCATTACGAGAATTGTGTTCGATTAGGGAGAAAAAAAGAAAATTTAGGAAATTGGGTTTTGAAATTTTTTTCCCCAATAAAACTCAACGATTAAAACCTCTATGAATATGAACGTCTGCAAATACAAACCTGTAATCAAATGTCTTA</canonical>
            <polymorphic>TCCCAACGAGTACCTTCTTTTTTACAGCCAATTTCTTTGTTATCTGAGTAAATTATTTTCAAACAAACAAGGCTTATTCTATTGTATGTTTTTGCCCATTCTCTTCAAATTGATCACACTTTTTTAATGCTTCCCCTCCTGTTTCCATCAGAATCCATTTTTCCTGTGTGCGCAATGATTCCGCCGCCATTTCTATTCTTTCAAGAGAATAAAGTGTTTTGTTAGACACTATCCTAAATTAAAGAACCAGAAGAGAGCAATAATAACTAGATTCGTTTTGAAAGAAAACACAGGAAATTCGACACCAACACCTCCTACGCATTGTATTGGTTACAAATGAATAATAAGATCACGGAAGTGTTGGGTGCAGAAAAGGCTAGAAAAAAAATTAATTGAGAGCTGTGGGAAGCAAATGAGATGACGTGATTCGTGCCTGGATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGRTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTACATGGAAGTTCGTTAACAATTCAATCATGACAATTTTCCCAGTAAATAAGGTTTCGAATACTAGGAACTCTGACGAATGACATAGAAGTCTCATTTCCATTCTAGGTGGTCAAAAAAGAACTGATAAATCACAAAAAACAAAAAAAAACACGTCAAAGTTGAATCTCCATTACGAGAATTGTGTTCGATTAGGGAGAAAAAAAGAAAATTTAGGAAATTGGGTTTTGAAATTTTTTTCCCCAATAAAACTCAACGATTAAAACCTCTATGAATATGAACGTCTGCAAATACAAACCTGTAATCAAATGTCTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGAACCAGACATTCCTTAT</pcr_primer_p1>
		<pcr_primer_p2>TAATTTCCCGGATAGTACACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTA</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGRTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15139</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>23416</contig_pos>
        <strand>+</strand>
        <context>AGTCTGRTTT[C/T]TGATAGAGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTT</left_flank>
        <right_flank>TGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGAGTACCTTCTTTTTTACAGCCAATTTCTTTGTTATCTGAGTAAATTATTTTCAAACAAACAAGGCTTATTCTATTGTATGTTTTTGCCCATTCTCTTCAAATTGATCACACTTTTTTAATGCTTCCCCTCCTGTTTCCATCAGAATCCATTTTTCCTGTGTGCGCAATGATTCCGCCGCCATTTCTATTCTTTCAAGAGAATAAAGTGTTTTGTTAGACACTATCCTAAATTAAAGAACCAGAAGAGAGCAATAATAACTAGATTCGTTTTGAAAGAAAACACAGGAAATTCGACACCAACACCTCCTACGCATTGTATTGGTTACAAATGAATAATAAGATCACGGAAGTGTTGGGTGCAGAAAAGGCTAGAAAAAAAATTAATTGAGAGCTGTGGGAAGCAAATGAGATGACGTGATTCGTGCCTGGATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTACATGGAAGTTCGTTAACAATTCAATCATGACAATTTTCCCAGTAAATAAGGTTTCGAATACTAGGAACTCTGACGAATGACATAGAAGTCTCATTTCCATTCTAGGTGGTCAAAAAAGAACTGATAAATCACAAAAAACAAAAAAAAACACGTCAAAGTTGAATCTCCATTACGAGAATTGTGTTCGATTAGGGAGAAAAAAAGAAAATTTAGGAAATTGGGTTTTGAAATTTTTTTCCCCAATAAAACTCAACGATTAAAACCTCTATGAATATGAACGTCTGCAAATACAAACCTGTAATCAAATGTCTTAAAAC</canonical>
            <polymorphic>AACGAGTACCTTCTTTTTTACAGCCAATTTCTTTGTTATCTGAGTAAATTATTTTCAAACAAACAAGGCTTATTCTATTGTATGTTTTTGCCCATTCTCTTCAAATTGATCACACTTTTTTAATGCTTCCCCTCCTGTTTCCATCAGAATCCATTTTTCCTGTGTGCGCAATGATTCCGCCGCCATTTCTATTCTTTCAAGAGAATAAAGTGTTTTGTTAGACACTATCCTAAATTAAAGAACCAGAAGAGAGCAATAATAACTAGATTCGTTTTGAAAGAAAACACAGGAAATTCGACACCAACACCTCCTACGCATTGTATTGGTTACAAATGAATAATAAGATCACGGAAGTGTTGGGTGCAGAAAAGGCTAGAAAAAAAATTAATTGAGAGCTGTGGGAAGCAAATGAGATGACGTGATTCGTGCCTGGATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTYTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTACATGGAAGTTCGTTAACAATTCAATCATGACAATTTTCCCAGTAAATAAGGTTTCGAATACTAGGAACTCTGACGAATGACATAGAAGTCTCATTTCCATTCTAGGTGGTCAAAAAAGAACTGATAAATCACAAAAAACAAAAAAAAACACGTCAAAGTTGAATCTCCATTACGAGAATTGTGTTCGATTAGGGAGAAAAAAAGAAAATTTAGGAAATTGGGTTTTGAAATTTTTTTCCCCAATAAAACTCAACGATTAAAACCTCTATGAATATGAACGTCTGCAAATACAAACCTGTAATCAAATGTCTTAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGAACCAGACATTCCTTAT</pcr_primer_p1>
		<pcr_primer_p2>TAATTTCCCGGATAGTACACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTA</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTYTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15140</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>23435</contig_pos>
        <strand>+</strand>
        <context>ATAATACAAA[C/T]GGGAGTATAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAA</left_flank>
        <right_flank>GGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGCCAATTTCTTTGTTATCTGAGTAAATTATTTTCAAACAAACAAGGCTTATTCTATTGTATGTTTTTGCCCATTCTCTTCAAATTGATCACACTTTTTTAATGCTTCCCCTCCTGTTTCCATCAGAATCCATTTTTCCTGTGTGCGCAATGATTCCGCCGCCATTTCTATTCTTTCAAGAGAATAAAGTGTTTTGTTAGACACTATCCTAAATTAAAGAACCAGAAGAGAGCAATAATAACTAGATTCGTTTTGAAAGAAAACACAGGAAATTCGACACCAACACCTCCTACGCATTGTATTGGTTACAAATGAATAATAAGATCACGGAAGTGTTGGGTGCAGAAAAGGCTAGAAAAAAAATTAATTGAGAGCTGTGGGAAGCAAATGAGATGACGTGATTCGTGCCTGGATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTACATGGAAGTTCGTTAACAATTCAATCATGACAATTTTCCCAGTAAATAAGGTTTCGAATACTAGGAACTCTGACGAATGACATAGAAGTCTCATTTCCATTCTAGGTGGTCAAAAAAGAACTGATAAATCACAAAAAACAAAAAAAAACACGTCAAAGTTGAATCTCCATTACGAGAATTGTGTTCGATTAGGGAGAAAAAAAGAAAATTTAGGAAATTGGGTTTTGAAATTTTTTTCCCCAATAAAACTCAACGATTAAAACCTCTATGAATATGAACGTCTGCAAATACAAACCTGTAATCAAATGTCTTAAAACTAGTTTTACGATTTCACGA</canonical>
            <polymorphic>ACAGCCAATTTCTTTGTTATCTGAGTAAATTATTTTCAAACAAACAAGGCTTATTCTATTGTATGTTTTTGCCCATTCTCTTCAAATTGATCACACTTTTTTAATGCTTCCCCTCCTGTTTCCATCAGAATCCATTTTTCCTGTGTGCGCAATGATTCCGCCGCCATTTCTATTCTTTCAAGAGAATAAAGTGTTTTGTTAGACACTATCCTAAATTAAAGAACCAGAAGAGAGCAATAATAACTAGATTCGTTTTGAAAGAAAACACAGGAAATTCGACACCAACACCTCCTACGCATTGTATTGGTTACAAATGAATAATAAGATCACGGAAGTGTTGGGTGCAGAAAAGGCTAGAAAAAAAATTAATTGAGAGCTGTGGGAAGCAAATGAGATGACGTGATTCGTGCCTGGATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAAYGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTACATGGAAGTTCGTTAACAATTCAATCATGACAATTTTCCCAGTAAATAAGGTTTCGAATACTAGGAACTCTGACGAATGACATAGAAGTCTCATTTCCATTCTAGGTGGTCAAAAAAGAACTGATAAATCACAAAAAACAAAAAAAAACACGTCAAAGTTGAATCTCCATTACGAGAATTGTGTTCGATTAGGGAGAAAAAAAGAAAATTTAGGAAATTGGGTTTTGAAATTTTTTTCCCCAATAAAACTCAACGATTAAAACCTCTATGAATATGAACGTCTGCAAATACAAACCTGTAATCAAATGTCTTAAAACTAGTTTTACGATTTCACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGAACCAGACATTCCTTAT</pcr_primer_p1>
		<pcr_primer_p2>TAATTTCCCGGATAGTACACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTA</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAAYGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15141</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>23456</contig_pos>
        <strand>+</strand>
        <context>AAATTATAGG[C/T]CCAAACAGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGG</left_flank>
        <right_flank>CCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGTAAATTATTTTCAAACAAACAAGGCTTATTCTATTGTATGTTTTTGCCCATTCTCTTCAAATTGATCACACTTTTTTAATGCTTCCCCTCCTGTTTCCATCAGAATCCATTTTTCCTGTGTGCGCAATGATTCCGCCGCCATTTCTATTCTTTCAAGAGAATAAAGTGTTTTGTTAGACACTATCCTAAATTAAAGAACCAGAAGAGAGCAATAATAACTAGATTCGTTTTGAAAGAAAACACAGGAAATTCGACACCAACACCTCCTACGCATTGTATTGGTTACAAATGAATAATAAGATCACGGAAGTGTTGGGTGCAGAAAAGGCTAGAAAAAAAATTAATTGAGAGCTGTGGGAAGCAAATGAGATGACGTGATTCGTGCCTGGATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTACATGGAAGTTCGTTAACAATTCAATCATGACAATTTTCCCAGTAAATAAGGTTTCGAATACTAGGAACTCTGACGAATGACATAGAAGTCTCATTTCCATTCTAGGTGGTCAAAAAAGAACTGATAAATCACAAAAAACAAAAAAAAACACGTCAAAGTTGAATCTCCATTACGAGAATTGTGTTCGATTAGGGAGAAAAAAAGAAAATTTAGGAAATTGGGTTTTGAAATTTTTTTCCCCAATAAAACTCAACGATTAAAACCTCTATGAATATGAACGTCTGCAAATACAAACCTGTAATCAAATGTCTTAAAACTAGTTTTACGATTTCACGAAATCTGAAAATGAACGTATCA</canonical>
            <polymorphic>TGAGTAAATTATTTTCAAACAAACAAGGCTTATTCTATTGTATGTTTTTGCCCATTCTCTTCAAATTGATCACACTTTTTTAATGCTTCCCCTCCTGTTTCCATCAGAATCCATTTTTCCTGTGTGCGCAATGATTCCGCCGCCATTTCTATTCTTTCAAGAGAATAAAGTGTTTTGTTAGACACTATCCTAAATTAAAGAACCAGAAGAGAGCAATAATAACTAGATTCGTTTTGAAAGAAAACACAGGAAATTCGACACCAACACCTCCTACGCATTGTATTGGTTACAAATGAATAATAAGATCACGGAAGTGTTGGGTGCAGAAAAGGCTAGAAAAAAAATTAATTGAGAGCTGTGGGAAGCAAATGAGATGACGTGATTCGTGCCTGGATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGYCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTACATGGAAGTTCGTTAACAATTCAATCATGACAATTTTCCCAGTAAATAAGGTTTCGAATACTAGGAACTCTGACGAATGACATAGAAGTCTCATTTCCATTCTAGGTGGTCAAAAAAGAACTGATAAATCACAAAAAACAAAAAAAAACACGTCAAAGTTGAATCTCCATTACGAGAATTGTGTTCGATTAGGGAGAAAAAAAGAAAATTTAGGAAATTGGGTTTTGAAATTTTTTTCCCCAATAAAACTCAACGATTAAAACCTCTATGAATATGAACGTCTGCAAATACAAACCTGTAATCAAATGTCTTAAAACTAGTTTTACGATTTCACGAAATCTGAAAATGAACGTATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>447 304 70 70 54 28 23 4</canonical_bands>
                <polymorphic_bands>447 304 124 70 28 23 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGAACCAGACATTCCTTAT</pcr_primer_p1>
		<pcr_primer_p2>TAATTTCCCGGATAGTACACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTA</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGYCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15142</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>23488</contig_pos>
        <strand>+</strand>
        <context>TTATATGGGA[A/C]ARTTCGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGA</left_flank>
        <right_flank>AATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTATTGTATGTTTTTGCCCATTCTCTTCAAATTGATCACACTTTTTTAATGCTTCCCCTCCTGTTTCCATCAGAATCCATTTTTCCTGTGTGCGCAATGATTCCGCCGCCATTTCTATTCTTTCAAGAGAATAAAGTGTTTTGTTAGACACTATCCTAAATTAAAGAACCAGAAGAGAGCAATAATAACTAGATTCGTTTTGAAAGAAAACACAGGAAATTCGACACCAACACCTCCTACGCATTGTATTGGTTACAAATGAATAATAAGATCACGGAAGTGTTGGGTGCAGAAAAGGCTAGAAAAAAAATTAATTGAGAGCTGTGGGAAGCAAATGAGATGACGTGATTCGTGCCTGGATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTACATGGAAGTTCGTTAACAATTCAATCATGACAATTTTCCCAGTAAATAAGGTTTCGAATACTAGGAACTCTGACGAATGACATAGAAGTCTCATTTCCATTCTAGGTGGTCAAAAAAGAACTGATAAATCACAAAAAACAAAAAAAAACACGTCAAAGTTGAATCTCCATTACGAGAATTGTGTTCGATTAGGGAGAAAAAAAGAAAATTTAGGAAATTGGGTTTTGAAATTTTTTTCCCCAATAAAACTCAACGATTAAAACCTCTATGAATATGAACGTCTGCAAATACAAACCTGTAATCAAATGTCTTAAAACTAGTTTTACGATTTCACGAAATCTGAAAATGAACGTATCATGTGATGCTGATATGTTTCCTGCAAATTAATT</canonical>
            <polymorphic>TTCTATTGTATGTTTTTGCCCATTCTCTTCAAATTGATCACACTTTTTTAATGCTTCCCCTCCTGTTTCCATCAGAATCCATTTTTCCTGTGTGCGCAATGATTCCGCCGCCATTTCTATTCTTTCAAGAGAATAAAGTGTTTTGTTAGACACTATCCTAAATTAAAGAACCAGAAGAGAGCAATAATAACTAGATTCGTTTTGAAAGAAAACACAGGAAATTCGACACCAACACCTCCTACGCATTGTATTGGTTACAAATGAATAATAAGATCACGGAAGTGTTGGGTGCAGAAAAGGCTAGAAAAAAAATTAATTGAGAGCTGTGGGAAGCAAATGAGATGACGTGATTCGTGCCTGGATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAMAATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTACATGGAAGTTCGTTAACAATTCAATCATGACAATTTTCCCAGTAAATAAGGTTTCGAATACTAGGAACTCTGACGAATGACATAGAAGTCTCATTTCCATTCTAGGTGGTCAAAAAAGAACTGATAAATCACAAAAAACAAAAAAAAACACGTCAAAGTTGAATCTCCATTACGAGAATTGTGTTCGATTAGGGAGAAAAAAAGAAAATTTAGGAAATTGGGTTTTGAAATTTTTTTCCCCAATAAAACTCAACGATTAAAACCTCTATGAATATGAACGTCTGCAAATACAAACCTGTAATCAAATGTCTTAAAACTAGTTTTACGATTTCACGAAATCTGAAAATGAACGTATCATGTGATGCTGATATGTTTCCTGCAAATTAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>317 281 219 161 22</canonical_bands>
                <polymorphic_bands>598 219 161 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGAACCAGACATTCCTTAT</pcr_primer_p1>
		<pcr_primer_p2>TAATTTCCCGGATAGTACACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTA</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAMAATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15143</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>23490</contig_pos>
        <strand>+</strand>
        <context>ATATGGGAMA[A/G]TTCGAAAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAA</left_flank>
        <right_flank>TTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATTGTATGTTTTTGCCCATTCTCTTCAAATTGATCACACTTTTTTAATGCTTCCCCTCCTGTTTCCATCAGAATCCATTTTTCCTGTGTGCGCAATGATTCCGCCGCCATTTCTATTCTTTCAAGAGAATAAAGTGTTTTGTTAGACACTATCCTAAATTAAAGAACCAGAAGAGAGCAATAATAACTAGATTCGTTTTGAAAGAAAACACAGGAAATTCGACACCAACACCTCCTACGCATTGTATTGGTTACAAATGAATAATAAGATCACGGAAGTGTTGGGTGCAGAAAAGGCTAGAAAAAAAATTAATTGAGAGCTGTGGGAAGCAAATGAGATGACGTGATTCGTGCCTGGATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTACATGGAAGTTCGTTAACAATTCAATCATGACAATTTTCCCAGTAAATAAGGTTTCGAATACTAGGAACTCTGACGAATGACATAGAAGTCTCATTTCCATTCTAGGTGGTCAAAAAAGAACTGATAAATCACAAAAAACAAAAAAAAACACGTCAAAGTTGAATCTCCATTACGAGAATTGTGTTCGATTAGGGAGAAAAAAAGAAAATTTAGGAAATTGGGTTTTGAAATTTTTTTCCCCAATAAAACTCAACGATTAAAACCTCTATGAATATGAACGTCTGCAAATACAAACCTGTAATCAAATGTCTTAAAACTAGTTTTACGATTTCACGAAATCTGAAAATGAACGTATCATGTGATGCTGATATGTTTCCTGCAAATTAATTAT</canonical>
            <polymorphic>CTATTGTATGTTTTTGCCCATTCTCTTCAAATTGATCACACTTTTTTAATGCTTCCCCTCCTGTTTCCATCAGAATCCATTTTTCCTGTGTGCGCAATGATTCCGCCGCCATTTCTATTCTTTCAAGAGAATAAAGTGTTTTGTTAGACACTATCCTAAATTAAAGAACCAGAAGAGAGCAATAATAACTAGATTCGTTTTGAAAGAAAACACAGGAAATTCGACACCAACACCTCCTACGCATTGTATTGGTTACAAATGAATAATAAGATCACGGAAGTGTTGGGTGCAGAAAAGGCTAGAAAAAAAATTAATTGAGAGCTGTGGGAAGCAAATGAGATGACGTGATTCGTGCCTGGATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAARTTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTACATGGAAGTTCGTTAACAATTCAATCATGACAATTTTCCCAGTAAATAAGGTTTCGAATACTAGGAACTCTGACGAATGACATAGAAGTCTCATTTCCATTCTAGGTGGTCAAAAAAGAACTGATAAATCACAAAAAACAAAAAAAAACACGTCAAAGTTGAATCTCCATTACGAGAATTGTGTTCGATTAGGGAGAAAAAAAGAAAATTTAGGAAATTGGGTTTTGAAATTTTTTTCCCCAATAAAACTCAACGATTAAAACCTCTATGAATATGAACGTCTGCAAATACAAACCTGTAATCAAATGTCTTAAAACTAGTTTTACGATTTCACGAAATCTGAAAATGAACGTATCATGTGATGCTGATATGTTTCCTGCAAATTAATTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>317 281 217 163 22</canonical_bands>
                <polymorphic_bands>598 217 163 22</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>153 145 129 106 91 74 70 59 42 30 29 22 14 13 9 6 4 4</canonical_bands>
                <polymorphic_bands>153 148 145 129 91 74 70 59 30 29 22 14 13 9 6 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGAACCAGACATTCCTTAT</pcr_primer_p1>
		<pcr_primer_p2>TAATTTCCCGGATAGTACACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTA</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAARTTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15144</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>23521</contig_pos>
        <strand>+</strand>
        <context>TTTACTTTTT[C/T]STAAAATCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTT</left_flank>
        <right_flank>GTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGATCACACTTTTTTAATGCTTCCCCTCCTGTTTCCATCAGAATCCATTTTTCCTGTGTGCGCAATGATTCCGCCGCCATTTCTATTCTTTCAAGAGAATAAAGTGTTTTGTTAGACACTATCCTAAATTAAAGAACCAGAAGAGAGCAATAATAACTAGATTCGTTTTGAAAGAAAACACAGGAAATTCGACACCAACACCTCCTACGCATTGTATTGGTTACAAATGAATAATAAGATCACGGAAGTGTTGGGTGCAGAAAAGGCTAGAAAAAAAATTAATTGAGAGCTGTGGGAAGCAAATGAGATGACGTGATTCGTGCCTGGATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTACATGGAAGTTCGTTAACAATTCAATCATGACAATTTTCCCAGTAAATAAGGTTTCGAATACTAGGAACTCTGACGAATGACATAGAAGTCTCATTTCCATTCTAGGTGGTCAAAAAAGAACTGATAAATCACAAAAAACAAAAAAAAACACGTCAAAGTTGAATCTCCATTACGAGAATTGTGTTCGATTAGGGAGAAAAAAAGAAAATTTAGGAAATTGGGTTTTGAAATTTTTTTCCCCAATAAAACTCAACGATTAAAACCTCTATGAATATGAACGTCTGCAAATACAAACCTGTAATCAAATGTCTTAAAACTAGTTTTACGATTTCACGAAATCTGAAAATGAACGTATCATGTGATGCTGATATGTTTCCTGCAAATTAATTATATCCGTTTTTTTCATTAGGCATTCTTTTTAT</canonical>
            <polymorphic>TTGATCACACTTTTTTAATGCTTCCCCTCCTGTTTCCATCAGAATCCATTTTTCCTGTGTGCGCAATGATTCCGCCGCCATTTCTATTCTTTCAAGAGAATAAAGTGTTTTGTTAGACACTATCCTAAATTAAAGAACCAGAAGAGAGCAATAATAACTAGATTCGTTTTGAAAGAAAACACAGGAAATTCGACACCAACACCTCCTACGCATTGTATTGGTTACAAATGAATAATAAGATCACGGAAGTGTTGGGTGCAGAAAAGGCTAGAAAAAAAATTAATTGAGAGCTGTGGGAAGCAAATGAGATGACGTGATTCGTGCCTGGATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTYGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTACATGGAAGTTCGTTAACAATTCAATCATGACAATTTTCCCAGTAAATAAGGTTTCGAATACTAGGAACTCTGACGAATGACATAGAAGTCTCATTTCCATTCTAGGTGGTCAAAAAAGAACTGATAAATCACAAAAAACAAAAAAAAACACGTCAAAGTTGAATCTCCATTACGAGAATTGTGTTCGATTAGGGAGAAAAAAAGAAAATTTAGGAAATTGGGTTTTGAAATTTTTTTCCCCAATAAAACTCAACGATTAAAACCTCTATGAATATGAACGTCTGCAAATACAAACCTGTAATCAAATGTCTTAAAACTAGTTTTACGATTTCACGAAATCTGAAAATGAACGTATCATGTGATGCTGATATGTTTCCTGCAAATTAATTATATCCGTTTTTTTCATTAGGCATTCTTTTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGAACCAGACATTCCTTAT</pcr_primer_p1>
		<pcr_primer_p2>TAATTTCCCGGATAGTACACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTA</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTYGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15145</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>23522</contig_pos>
        <strand>+</strand>
        <context>TTACTTTTTY[C/G]TAAAATCTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTT</left_flank>
        <right_flank>TAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATCACACTTTTTTAATGCTTCCCCTCCTGTTTCCATCAGAATCCATTTTTCCTGTGTGCGCAATGATTCCGCCGCCATTTCTATTCTTTCAAGAGAATAAAGTGTTTTGTTAGACACTATCCTAAATTAAAGAACCAGAAGAGAGCAATAATAACTAGATTCGTTTTGAAAGAAAACACAGGAAATTCGACACCAACACCTCCTACGCATTGTATTGGTTACAAATGAATAATAAGATCACGGAAGTGTTGGGTGCAGAAAAGGCTAGAAAAAAAATTAATTGAGAGCTGTGGGAAGCAAATGAGATGACGTGATTCGTGCCTGGATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTACATGGAAGTTCGTTAACAATTCAATCATGACAATTTTCCCAGTAAATAAGGTTTCGAATACTAGGAACTCTGACGAATGACATAGAAGTCTCATTTCCATTCTAGGTGGTCAAAAAAGAACTGATAAATCACAAAAAACAAAAAAAAACACGTCAAAGTTGAATCTCCATTACGAGAATTGTGTTCGATTAGGGAGAAAAAAAGAAAATTTAGGAAATTGGGTTTTGAAATTTTTTTCCCCAATAAAACTCAACGATTAAAACCTCTATGAATATGAACGTCTGCAAATACAAACCTGTAATCAAATGTCTTAAAACTAGTTTTACGATTTCACGAAATCTGAAAATGAACGTATCATGTGATGCTGATATGTTTCCTGCAAATTAATTATATCCGTTTTTTTCATTAGGCATTCTTTTTATT</canonical>
            <polymorphic>TGATCACACTTTTTTAATGCTTCCCCTCCTGTTTCCATCAGAATCCATTTTTCCTGTGTGCGCAATGATTCCGCCGCCATTTCTATTCTTTCAAGAGAATAAAGTGTTTTGTTAGACACTATCCTAAATTAAAGAACCAGAAGAGAGCAATAATAACTAGATTCGTTTTGAAAGAAAACACAGGAAATTCGACACCAACACCTCCTACGCATTGTATTGGTTACAAATGAATAATAAGATCACGGAAGTGTTGGGTGCAGAAAAGGCTAGAAAAAAAATTAATTGAGAGCTGTGGGAAGCAAATGAGATGACGTGATTCGTGCCTGGATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTTSTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTACATGGAAGTTCGTTAACAATTCAATCATGACAATTTTCCCAGTAAATAAGGTTTCGAATACTAGGAACTCTGACGAATGACATAGAAGTCTCATTTCCATTCTAGGTGGTCAAAAAAGAACTGATAAATCACAAAAAACAAAAAAAAACACGTCAAAGTTGAATCTCCATTACGAGAATTGTGTTCGATTAGGGAGAAAAAAAGAAAATTTAGGAAATTGGGTTTTGAAATTTTTTTCCCCAATAAAACTCAACGATTAAAACCTCTATGAATATGAACGTCTGCAAATACAAACCTGTAATCAAATGTCTTAAAACTAGTTTTACGATTTCACGAAATCTGAAAATGAACGTATCATGTGATGCTGATATGTTTCCTGCAAATTAATTATATCCGTTTTTTTCATTAGGCATTCTTTTTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGAACCAGACATTCCTTAT</pcr_primer_p1>
		<pcr_primer_p2>TAATTTCCCGGATAGTACACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTA</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTTSTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15146</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>23545</contig_pos>
        <strand>+</strand>
        <context>GCCAATAAAA[C/T]GAAATAATAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAA</left_flank>
        <right_flank>GAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCTCCTGTTTCCATCAGAATCCATTTTTCCTGTGTGCGCAATGATTCCGCCGCCATTTCTATTCTTTCAAGAGAATAAAGTGTTTTGTTAGACACTATCCTAAATTAAAGAACCAGAAGAGAGCAATAATAACTAGATTCGTTTTGAAAGAAAACACAGGAAATTCGACACCAACACCTCCTACGCATTGTATTGGTTACAAATGAATAATAAGATCACGGAAGTGTTGGGTGCAGAAAAGGCTAGAAAAAAAATTAATTGAGAGCTGTGGGAAGCAAATGAGATGACGTGATTCGTGCCTGGATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTACATGGAAGTTCGTTAACAATTCAATCATGACAATTTTCCCAGTAAATAAGGTTTCGAATACTAGGAACTCTGACGAATGACATAGAAGTCTCATTTCCATTCTAGGTGGTCAAAAAAGAACTGATAAATCACAAAAAACAAAAAAAAACACGTCAAAGTTGAATCTCCATTACGAGAATTGTGTTCGATTAGGGAGAAAAAAAGAAAATTTAGGAAATTGGGTTTTGAAATTTTTTTCCCCAATAAAACTCAACGATTAAAACCTCTATGAATATGAACGTCTGCAAATACAAACCTGTAATCAAATGTCTTAAAACTAGTTTTACGATTTCACGAAATCTGAAAATGAACGTATCATGTGATGCTGATATGTTTCCTGCAAATTAATTATATCCGTTTTTTTCATTAGGCATTCTTTTTATTCTAACTCAAAAGGCTCCCATTGA</canonical>
            <polymorphic>CCCTCCTGTTTCCATCAGAATCCATTTTTCCTGTGTGCGCAATGATTCCGCCGCCATTTCTATTCTTTCAAGAGAATAAAGTGTTTTGTTAGACACTATCCTAAATTAAAGAACCAGAAGAGAGCAATAATAACTAGATTCGTTTTGAAAGAAAACACAGGAAATTCGACACCAACACCTCCTACGCATTGTATTGGTTACAAATGAATAATAAGATCACGGAAGTGTTGGGTGCAGAAAAGGCTAGAAAAAAAATTAATTGAGAGCTGTGGGAAGCAAATGAGATGACGTGATTCGTGCCTGGATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAAYGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTACATGGAAGTTCGTTAACAATTCAATCATGACAATTTTCCCAGTAAATAAGGTTTCGAATACTAGGAACTCTGACGAATGACATAGAAGTCTCATTTCCATTCTAGGTGGTCAAAAAAGAACTGATAAATCACAAAAAACAAAAAAAAACACGTCAAAGTTGAATCTCCATTACGAGAATTGTGTTCGATTAGGGAGAAAAAAAGAAAATTTAGGAAATTGGGTTTTGAAATTTTTTTCCCCAATAAAACTCAACGATTAAAACCTCTATGAATATGAACGTCTGCAAATACAAACCTGTAATCAAATGTCTTAAAACTAGTTTTACGATTTCACGAAATCTGAAAATGAACGTATCATGTGATGCTGATATGTTTCCTGCAAATTAATTATATCCGTTTTTTTCATTAGGCATTCTTTTTATTCTAACTCAAAAGGCTCCCATTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGAACCAGACATTCCTTAT</pcr_primer_p1>
		<pcr_primer_p2>TAATTTCCCGGATAGTACACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAACGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTA</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGAACCAGACATTCCTTATAATTGCTAGCCAGCCGTTGATATGGATTTGTACAGTCTGGTTTTTGATAGAGATAATACAAATGGGAGTATATAAATTATAGGCCCAAACAGTCTATCAAAGTATTTATATGGGAAAATTCGAAAATCTGGACTTGGCTTTACTTTTTTGTAAAATCTTGTTGCCAATAAAAYGAAATAATATTTCAAGGTTTGTTTTCGAATGATGGTGTACTATCCGGGAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15149</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>24940</contig_pos>
        <strand>+</strand>
        <context>GTTCAATGAA[A/C]ATGTTTCCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGACAAGATATGATGCATCGACCGGGAATGCTTCTCATTTGTTCAATGAA</left_flank>
        <right_flank>ATGTTTCCTTATTCTCGACGATTGCTAACTCTGGTGTGTTCCAACATTAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGGGGAAACTCGGTATTGAGATGAAAGACATAGTGAAGGAAGATTCTAGAAAACTGGTAATGATTTTGGAAATTTTAACAGTTAAAAAACGATCATAACCTAATGGAGAGATGTTAATATTCAGCTTACCAGATCCTGATTCTCGTGAGAATTCTAGAGAATTCCTTCTGACCAAATCCGAATGACAGGAAATCGTCTTTCTCGGTATGAAAATTTGGTACTTTGAAACTTTCTTCTACTTTTGTGATCTTTTTGAGAGTTCGGTTTTTGTCTTGACTATCGGACACCTTTGAATAGCTCTTTGTGCTAAACCGCACTCTTTTGGGCCTGATTCACCAACATTCGTGCATGGCTTTCCCCGTGATCAGTTTCCTATATCATTTTTACACTGTAACCAACAAATTAACTCCCTACATTGTATGATTTTAACGTTCCAATAAAGCATGTAGACAAGATATGATGCATCGACCGGGAATGCTTCTCATTTGTTCAATGAACATGTTTCCTTATTCTCGACGATTGCTAACTCTGGTGTGTTCCAACATTACTTGTTGTAATTGGAGTCAGGGATGAATGTTATTGAAGATAAGATTACGATGAAGATAATTTGACGCATTTCTTTCCATGGTCTATGTTTCAGTTCCAGATTAGAAAAAAGTGAGGCGACTGAAAATTGGCGACGAAGACTCATCTGAGAATCCCATCAACTTCATGTATTCTGAAAGTTTCCAAAAAAAACCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTTTGAATGGGTCACGGATAATGGTTTTAATTGAACATAATTCGAAGTTCGTATATCTTCTTTGTATATGTAGTAGTCAGAAAAAATTGAAAAATAATTATGAAAAGAATTATGAATGGACATGTGAAACTTTTTTGATCTAAAACGAGTAAGATCAACAAAACACAAAAATAAGACTGGAGTCAATGAGCCATTATTCCCTCACACCCTTTCCT</canonical>
            <polymorphic>ATGGGGGAAACTCGGTATTGAGATGAAAGACATAGTGAAGGAAGATTCTAGAAAACTGGTAATGATTTTGGAAATTTTAACAGTTAAAAAACGATCATAACCTAATGGAGAGATGTTAATATTCAGCTTACCAGATCCTGATTCTCGTGAGAATTCTAGAGAATTCCTTCTGACCAAATCCGAATGACAGGAAATCGTCTTTCTCGGTATGAAAATTTGGTACTTTGAAACTTTCTTCTACTTTTGTGATCTTTTTGAGAGTTCGGTTTTTGTCTTGACTATCGGACACCTTTGAATAGCTCTTTGTGCTAAACCGCACTCTTTTGGGCCTGATTCACCAACATTCGTGCATGGCTTTCCCCGTGATCAGTTTCCTATATCATTTTTACACTGTAACCAACAAATTAACTCCCTACATTGTATGATTTTAACGTTCCAATAAAGCATGTAGACAAGATATGATGCATCGACCGGGAATGCTTCTCATTTGTTCAATGAAMATGTTTCCTTATTCTCGACGATTGCTAACTCTGGTGTGTTCCAACATTACTTGTTGTAATTGGAGTCAGGGATGAATGTTATTGAAGATAAGATTACGATGAAGATAATTTGACGCATTTCTTTCCATGGTCTATGTTTCAGTTCCAGATTAGAAAAAAGTGAGGCGACTGAAAATTGGCGACGAAGACTCATCTGAGAATCCCATCAACTTCATGTATTCTGAAAGTTTCCAAAAAAAACCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTTTGAATGGGTCACGGATAATGGTTTTAATTGAACATAATTCGAAGTTCGTATATCTTCTTTGTATATGTAGTAGTCAGAAAAAATTGAAAAATAATTATGAAAAGAATTATGAATGGACATGTGAAACTTTTTTGATCTAAAACGAGTAAGATCAACAAAACACAAAAATAAGACTGGAGTCAATGAGCCATTATTCCCTCACACCCTTTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>499 406 95</canonical_bands>
                <polymorphic_bands>905 95</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>499 406 95</canonical_bands>
                <polymorphic_bands>905 95</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>448 406 91 55</canonical_bands>
                <polymorphic_bands>461 448 91</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>350 193 126 95 94 87 55</canonical_bands>
                <polymorphic_bands>350 193 181 95 94 87</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTATCGGACACCTTTGAATAG</pcr_primer_p1>
		<pcr_primer_p2>CAAGTAATGTTGGAACACACC</pcr_primer_p2>
		<pcr_amplicon_size>276</pcr_amplicon_size>
		<canonical_amplicon>ACTATCGGACACCTTTGAATAGCTCTTTGTGCTAAACCGCACTCTTTTGGGCCTGATTCACCAACATTCGTGCATGGCTTTCCCCGTGATCAGTTTCCTATATCATTTTTACACTGTAACCAACAAATTAACTCCCTACATTGTATGATTTTAACGTTCCAATAAAGCATGTAGACAAGATATGATGCATCGACCGGGAATGCTTCTCATTTGTTCAATGAACATGTTTCCTTATTCTCGACGATTGCTAACTCTGGTGTGTTCCAACATTACTTG</canonical_amplicon>
		<polymorphic_amplicon>ACTATCGGACACCTTTGAATAGCTCTTTGTGCTAAACCGCACTCTTTTGGGCCTGATTCACCAACATTCGTGCATGGCTTTCCCCGTGATCAGTTTCCTATATCATTTTTACACTGTAACCAACAAATTAACTCCCTACATTGTATGATTTTAACGTTCCAATAAAGCATGTAGACAAGATATGATGCATCGACCGGGAATGCTTCTCATTTGTTCAATGAAMATGTTTCCTTATTCTCGACGATTGCTAACTCTGGTGTGTTCCAACATTACTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15150</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>25082</contig_pos>
        <strand>+</strand>
        <context>CTATGTTTCA[A/G]TTCCAGATTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTACGATGAAGATAATTTGACGCATTTCTTTCCATGGTCTATGTTTCA</left_flank>
        <right_flank>TTCCAGATTAGAAAAAAGTGAGGCGACTGAAAATTGGCGACGAAGACTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCGTGAGAATTCTAGAGAATTCCTTCTGACCAAATCCGAATGACAGGAAATCGTCTTTCTCGGTATGAAAATTTGGTACTTTGAAACTTTCTTCTACTTTTGTGATCTTTTTGAGAGTTCGGTTTTTGTCTTGACTATCGGACACCTTTGAATAGCTCTTTGTGCTAAACCGCACTCTTTTGGGCCTGATTCACCAACATTCGTGCATGGCTTTCCCCGTGATCAGTTTCCTATATCATTTTTACACTGTAACCAACAAATTAACTCCCTACATTGTATGATTTTAACGTTCCAATAAAGCATGTAGACAAGATATGATGCATCGACCGGGAATGCTTCTCATTTGTTCAATGAACATGTTTCCTTATTCTCGACGATTGCTAACTCTGGTGTGTTCCAACATTACTTGTTGTAATTGGAGTCAGGGATGAATGTTATTGAAGATAAGATTACGATGAAGATAATTTGACGCATTTCTTTCCATGGTCTATGTTTCAGTTCCAGATTAGAAAAAAGTGAGGCGACTGAAAATTGGCGACGAAGACTCATCTGAGAATCCCATCAACTTCATGTATTCTGAAAGTTTCCAAAAAAAACCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTTTGAATGGGTCACGGATAATGGTTTTAATTGAACATAATTCGAAGTTCGTATATCTTCTTTGTATATGTAGTAGTCAGAAAAAATTGAAAAATAATTATGAAAAGAATTATGAATGGACATGTGAAACTTTTTTGATCTAAAACGAGTAAGATCAACAAAACACAAAAATAAGACTGGAGTCAATGAGCCATTATTCCCTCACACCCTTTCCTATTTTTCCTTATCACCTGTGCATTTTCTGCTCCTTTTTTTCCAGGGAATTCTGAGCTCAAAAATTGTGTGCCTACTCTTCATTCATCATGTCGCATTCTCTCTTTTTCGTTTTTCTTCTGTCCCACGTCTTCTTCTTCTTCT</canonical>
            <polymorphic>TCTCGTGAGAATTCTAGAGAATTCCTTCTGACCAAATCCGAATGACAGGAAATCGTCTTTCTCGGTATGAAAATTTGGTACTTTGAAACTTTCTTCTACTTTTGTGATCTTTTTGAGAGTTCGGTTTTTGTCTTGACTATCGGACACCTTTGAATAGCTCTTTGTGCTAAACCGCACTCTTTTGGGCCTGATTCACCAACATTCGTGCATGGCTTTCCCCGTGATCAGTTTCCTATATCATTTTTACACTGTAACCAACAAATTAACTCCCTACATTGTATGATTTTAACGTTCCAATAAAGCATGTAGACAAGATATGATGCATCGACCGGGAATGCTTCTCATTTGTTCAATGAACATGTTTCCTTATTCTCGACGATTGCTAACTCTGGTGTGTTCCAACATTACTTGTTGTAATTGGAGTCAGGGATGAATGTTATTGAAGATAAGATTACGATGAAGATAATTTGACGCATTTCTTTCCATGGTCTATGTTTCARTTCCAGATTAGAAAAAAGTGAGGCGACTGAAAATTGGCGACGAAGACTCATCTGAGAATCCCATCAACTTCATGTATTCTGAAAGTTTCCAAAAAAAACCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTTTGAATGGGTCACGGATAATGGTTTTAATTGAACATAATTCGAAGTTCGTATATCTTCTTTGTATATGTAGTAGTCAGAAAAAATTGAAAAATAATTATGAAAAGAATTATGAATGGACATGTGAAACTTTTTTGATCTAAAACGAGTAAGATCAACAAAACACAAAAATAAGACTGGAGTCAATGAGCCATTATTCCCTCACACCCTTTCCTATTTTTCCTTATCACCTGTGCATTTTCTGCTCCTTTTTTTCCAGGGAATTCTGAGCTCAAAAATTGTGTGCCTACTCTTCATTCATCATGTCGCATTCTCTCTTTTTCGTTTTTCTTCTGTCCCACGTCTTCTTCTTCTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAACATTACTTGTTGTAATTG</pcr_primer_p1>
		<pcr_primer_p2>AATTTTTCAAAGAAGAGGAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TCCAACATTACTTGTTGTAATTGGAGTCAGGGATGAATGTTATTGAAGATAAGATTACGATGAAGATAATTTGACGCATTTCTTTCCATGGTCTATGTTTCAGTTCCAGATTAGAAAAAAGTGAGGCGACTGAAAATTGGCGACGAAGACTCATCTGAGAATCCCATCAACTTCATGTATTCTGAAAGTTTCCAAAAAAAACCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATT</canonical_amplicon>
		<polymorphic_amplicon>TCCAACATTACTTGTTGTAATTGGAGTCAGGGATGAATGTTATTGAAGATAAGATTACGATGAAGATAATTTGACGCATTTCTTTCCATGGTCTATGTTTCARTTCCAGATTAGAAAAAAGTGAGGCGACTGAAAATTGGCGACGAAGACTCATCTGAGAATCCCATCAACTTCATGTATTCTGAAAGTTTCCAAAAAAAACCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15151</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>25179</contig_pos>
        <strand>+</strand>
        <context>TTCCYAAAAA[A/T]MYCTGATTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCATCTGAGAATCCCATCAACTTCATGTATTCTGAAAGTTTCCAAAAAA</left_flank>
        <right_flank>ACCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTTGTGATCTTTTTGAGAGTTCGGTTTTTGTCTTGACTATCGGACACCTTTGAATAGCTCTTTGTGCTAAACCGCACTCTTTTGGGCCTGATTCACCAACATTCGTGCATGGCTTTCCCCGTGATCAGTTTCCTATATCATTTTTACACTGTAACCAACAAATTAACTCCCTACATTGTATGATTTTAACGTTCCAATAAAGCATGTAGACAAGATATGATGCATCGACCGGGAATGCTTCTCATTTGTTCAATGAACATGTTTCCTTATTCTCGACGATTGCTAACTCTGGTGTGTTCCAACATTACTTGTTGTAATTGGAGTCAGGGATGAATGTTATTGAAGATAAGATTACGATGAAGATAATTTGACGCATTTCTTTCCATGGTCTATGTTTCAGTTCCAGATTAGAAAAAAGTGAGGCGACTGAAAATTGGCGACGAAGACTCATCTGAGAATCCCATCAACTTCATGTATTCTGAAAGTTTCCAAAAAAAACCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTTTGAATGGGTCACGGATAATGGTTTTAATTGAACATAATTCGAAGTTCGTATATCTTCTTTGTATATGTAGTAGTCAGAAAAAATTGAAAAATAATTATGAAAAGAATTATGAATGGACATGTGAAACTTTTTTGATCTAAAACGAGTAAGATCAACAAAACACAAAAATAAGACTGGAGTCAATGAGCCATTATTCCCTCACACCCTTTCCTATTTTTCCTTATCACCTGTGCATTTTCTGCTCCTTTTTTTCCAGGGAATTCTGAGCTCAAAAATTGTGTGCCTACTCTTCATTCATCATGTCGCATTCTCTCTTTTTCGTTTTTCTTCTGTCCCACGTCTTCTTCTTCTTCTGGTCCCTTTCATTTTAAGGTAATTGGATTAATGTTATGCAAATGTGAGCTTTTTTTCAGCGTTGGAGGAGAGGAGAAAGAATGACTAAAAACATTTC</canonical>
            <polymorphic>ACTTTTGTGATCTTTTTGAGAGTTCGGTTTTTGTCTTGACTATCGGACACCTTTGAATAGCTCTTTGTGCTAAACCGCACTCTTTTGGGCCTGATTCACCAACATTCGTGCATGGCTTTCCCCGTGATCAGTTTCCTATATCATTTTTACACTGTAACCAACAAATTAACTCCCTACATTGTATGATTTTAACGTTCCAATAAAGCATGTAGACAAGATATGATGCATCGACCGGGAATGCTTCTCATTTGTTCAATGAACATGTTTCCTTATTCTCGACGATTGCTAACTCTGGTGTGTTCCAACATTACTTGTTGTAATTGGAGTCAGGGATGAATGTTATTGAAGATAAGATTACGATGAAGATAATTTGACGCATTTCTTTCCATGGTCTATGTTTCAGTTCCAGATTAGAAAAAAGTGAGGCGACTGAAAATTGGCGACGAAGACTCATCTGAGAATCCCATCAACTTCATGTATTCTGAAAGTTTCCAAAAAAWACCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTTTGAATGGGTCACGGATAATGGTTTTAATTGAACATAATTCGAAGTTCGTATATCTTCTTTGTATATGTAGTAGTCAGAAAAAATTGAAAAATAATTATGAAAAGAATTATGAATGGACATGTGAAACTTTTTTGATCTAAAACGAGTAAGATCAACAAAACACAAAAATAAGACTGGAGTCAATGAGCCATTATTCCCTCACACCCTTTCCTATTTTTCCTTATCACCTGTGCATTTTCTGCTCCTTTTTTTCCAGGGAATTCTGAGCTCAAAAATTGTGTGCCTACTCTTCATTCATCATGTCGCATTCTCTCTTTTTCGTTTTTCTTCTGTCCCACGTCTTCTTCTTCTTCTGGTCCCTTTCATTTTAAGGTAATTGGATTAATGTTATGCAAATGTGAGCTTTTTTTCAGCGTTGGAGGAGAGGAGAAAGAATGACTAAAAACATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATAATTTGACGCATTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TACGAACTTCGAATTATGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>AGATAATTTGACGCATTTCTTTCCATGGTCTATGTTTCAGTTCCAGATTAGAAAAAAGTGAGGCGACTGAAAATTGGCGACGAAGACTCATCTGAGAATCCCATCAACTTCATGTATTCTGAAAGTTTCCAAAAAAAACCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTTTGAATGGGTCACGGATAATGGTTTTAATTGAACATAATTCGAAGTTCGTA</canonical_amplicon>
		<polymorphic_amplicon>AGATAATTTGACGCATTTCTTTCCATGGTCTATGTTTCAGTTCCAGATTAGAAAAAAGTGAGGCGACTGAAAATTGGCGACGAAGACTCATCTGAGAATCCCATCAACTTCATGTATTCTGAAAGTTTCCAAAAAAWACCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTTTGAATGGGTCACGGATAATGGTTTTAATTGAACATAATTCGAAGTTCGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15152</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>25180</contig_pos>
        <strand>+</strand>
        <context>TCCYAAAAAW[A/C]YCTGATTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCATCTGAGAATCCCATCAACTTCATGTATTCTGAAAGTTTCCAAAAAAA</left_flank>
        <right_flank>CCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTTTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTGTGATCTTTTTGAGAGTTCGGTTTTTGTCTTGACTATCGGACACCTTTGAATAGCTCTTTGTGCTAAACCGCACTCTTTTGGGCCTGATTCACCAACATTCGTGCATGGCTTTCCCCGTGATCAGTTTCCTATATCATTTTTACACTGTAACCAACAAATTAACTCCCTACATTGTATGATTTTAACGTTCCAATAAAGCATGTAGACAAGATATGATGCATCGACCGGGAATGCTTCTCATTTGTTCAATGAACATGTTTCCTTATTCTCGACGATTGCTAACTCTGGTGTGTTCCAACATTACTTGTTGTAATTGGAGTCAGGGATGAATGTTATTGAAGATAAGATTACGATGAAGATAATTTGACGCATTTCTTTCCATGGTCTATGTTTCAGTTCCAGATTAGAAAAAAGTGAGGCGACTGAAAATTGGCGACGAAGACTCATCTGAGAATCCCATCAACTTCATGTATTCTGAAAGTTTCCAAAAAAAACCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTTTGAATGGGTCACGGATAATGGTTTTAATTGAACATAATTCGAAGTTCGTATATCTTCTTTGTATATGTAGTAGTCAGAAAAAATTGAAAAATAATTATGAAAAGAATTATGAATGGACATGTGAAACTTTTTTGATCTAAAACGAGTAAGATCAACAAAACACAAAAATAAGACTGGAGTCAATGAGCCATTATTCCCTCACACCCTTTCCTATTTTTCCTTATCACCTGTGCATTTTCTGCTCCTTTTTTTCCAGGGAATTCTGAGCTCAAAAATTGTGTGCCTACTCTTCATTCATCATGTCGCATTCTCTCTTTTTCGTTTTTCTTCTGTCCCACGTCTTCTTCTTCTTCTGGTCCCTTTCATTTTAAGGTAATTGGATTAATGTTATGCAAATGTGAGCTTTTTTTCAGCGTTGGAGGAGAGGAGAAAGAATGACTAAAAACATTTCC</canonical>
            <polymorphic>CTTTTGTGATCTTTTTGAGAGTTCGGTTTTTGTCTTGACTATCGGACACCTTTGAATAGCTCTTTGTGCTAAACCGCACTCTTTTGGGCCTGATTCACCAACATTCGTGCATGGCTTTCCCCGTGATCAGTTTCCTATATCATTTTTACACTGTAACCAACAAATTAACTCCCTACATTGTATGATTTTAACGTTCCAATAAAGCATGTAGACAAGATATGATGCATCGACCGGGAATGCTTCTCATTTGTTCAATGAACATGTTTCCTTATTCTCGACGATTGCTAACTCTGGTGTGTTCCAACATTACTTGTTGTAATTGGAGTCAGGGATGAATGTTATTGAAGATAAGATTACGATGAAGATAATTTGACGCATTTCTTTCCATGGTCTATGTTTCAGTTCCAGATTAGAAAAAAGTGAGGCGACTGAAAATTGGCGACGAAGACTCATCTGAGAATCCCATCAACTTCATGTATTCTGAAAGTTTCCAAAAAAAMCCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTTTGAATGGGTCACGGATAATGGTTTTAATTGAACATAATTCGAAGTTCGTATATCTTCTTTGTATATGTAGTAGTCAGAAAAAATTGAAAAATAATTATGAAAAGAATTATGAATGGACATGTGAAACTTTTTTGATCTAAAACGAGTAAGATCAACAAAACACAAAAATAAGACTGGAGTCAATGAGCCATTATTCCCTCACACCCTTTCCTATTTTTCCTTATCACCTGTGCATTTTCTGCTCCTTTTTTTCCAGGGAATTCTGAGCTCAAAAATTGTGTGCCTACTCTTCATTCATCATGTCGCATTCTCTCTTTTTCGTTTTTCTTCTGTCCCACGTCTTCTTCTTCTTCTGGTCCCTTTCATTTTAAGGTAATTGGATTAATGTTATGCAAATGTGAGCTTTTTTTCAGCGTTGGAGGAGAGGAGAAAGAATGACTAAAAACATTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATAATTTGACGCATTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TACGAACTTCGAATTATGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>AGATAATTTGACGCATTTCTTTCCATGGTCTATGTTTCAGTTCCAGATTAGAAAAAAGTGAGGCGACTGAAAATTGGCGACGAAGACTCATCTGAGAATCCCATCAACTTCATGTATTCTGAAAGTTTCCAAAAAAAACCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTTTGAATGGGTCACGGATAATGGTTTTAATTGAACATAATTCGAAGTTCGTA</canonical_amplicon>
		<polymorphic_amplicon>AGATAATTTGACGCATTTCTTTCCATGGTCTATGTTTCAGTTCCAGATTAGAAAAAAGTGAGGCGACTGAAAATTGGCGACGAAGACTCATCTGAGAATCCCATCAACTTCATGTATTCTGAAAGTTTCCAAAAAAAMCCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTTTGAATGGGTCACGGATAATGGTTTTAATTGAACATAATTCGAAGTTCGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15153</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>25181</contig_pos>
        <strand></strand>
        <context>CCYAAAAAWM[C/T]CTGATTTCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATCTGAGAATCCCATCAACTTCATGTATTCTGAAAGTTTCCAAAAAAAA</left_flank>
        <right_flank>CTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTTTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGTGATCTTTTTGAGAGTTCGGTTTTTGTCTTGACTATCGGACACCTTTGAATAGCTCTTTGTGCTAAACCGCACTCTTTTGGGCCTGATTCACCAACATTCGTGCATGGCTTTCCCCGTGATCAGTTTCCTATATCATTTTTACACTGTAACCAACAAATTAACTCCCTACATTGTATGATTTTAACGTTCCAATAAAGCATGTAGACAAGATATGATGCATCGACCGGGAATGCTTCTCATTTGTTCAATGAACATGTTTCCTTATTCTCGACGATTGCTAACTCTGGTGTGTTCCAACATTACTTGTTGTAATTGGAGTCAGGGATGAATGTTATTGAAGATAAGATTACGATGAAGATAATTTGACGCATTTCTTTCCATGGTCTATGTTTCAGTTCCAGATTAGAAAAAAGTGAGGCGACTGAAAATTGGCGACGAAGACTCATCTGAGAATCCCATCAACTTCATGTATTCTGAAAGTTTCCAAAAAAAACCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTTTGAATGGGTCACGGATAATGGTTTTAATTGAACATAATTCGAAGTTCGTATATCTTCTTTGTATATGTAGTAGTCAGAAAAAATTGAAAAATAATTATGAAAAGAATTATGAATGGACATGTGAAACTTTTTTGATCTAAAACGAGTAAGATCAACAAAACACAAAAATAAGACTGGAGTCAATGAGCCATTATTCCCTCACACCCTTTCCTATTTTTCCTTATCACCTGTGCATTTTCTGCTCCTTTTTTTCCAGGGAATTCTGAGCTCAAAAATTGTGTGCCTACTCTTCATTCATCATGTCGCATTCTCTCTTTTTCGTTTTTCTTCTGTCCCACGTCTTCTTCTTCTTCTGGTCCCTTTCATTTTAAGGTAATTGGATTAATGTTATGCAAATGTGAGCTTTTTTTCAGCGTTGGAGGAGAGGAGAAAGAATGACTAAAAACATTTCCT</canonical>
            <polymorphic>TTTTGTGATCTTTTTGAGAGTTCGGTTTTTGTCTTGACTATCGGACACCTTTGAATAGCTCTTTGTGCTAAACCGCACTCTTTTGGGCCTGATTCACCAACATTCGTGCATGGCTTTCCCCGTGATCAGTTTCCTATATCATTTTTACACTGTAACCAACAAATTAACTCCCTACATTGTATGATTTTAACGTTCCAATAAAGCATGTAGACAAGATATGATGCATCGACCGGGAATGCTTCTCATTTGTTCAATGAACATGTTTCCTTATTCTCGACGATTGCTAACTCTGGTGTGTTCCAACATTACTTGTTGTAATTGGAGTCAGGGATGAATGTTATTGAAGATAAGATTACGATGAAGATAATTTGACGCATTTCTTTCCATGGTCTATGTTTCAGTTCCAGATTAGAAAAAAGTGAGGCGACTGAAAATTGGCGACGAAGACTCATCTGAGAATCCCATCAACTTCATGTATTCTGAAAGTTTCCAAAAAAAAYCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTTTGAATGGGTCACGGATAATGGTTTTAATTGAACATAATTCGAAGTTCGTATATCTTCTTTGTATATGTAGTAGTCAGAAAAAATTGAAAAATAATTATGAAAAGAATTATGAATGGACATGTGAAACTTTTTTGATCTAAAACGAGTAAGATCAACAAAACACAAAAATAAGACTGGAGTCAATGAGCCATTATTCCCTCACACCCTTTCCTATTTTTCCTTATCACCTGTGCATTTTCTGCTCCTTTTTTTCCAGGGAATTCTGAGCTCAAAAATTGTGTGCCTACTCTTCATTCATCATGTCGCATTCTCTCTTTTTCGTTTTTCTTCTGTCCCACGTCTTCTTCTTCTTCTGGTCCCTTTCATTTTAAGGTAATTGGATTAATGTTATGCAAATGTGAGCTTTTTTTCAGCGTTGGAGGAGAGGAGAAAGAATGACTAAAAACATTTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATAATTTGACGCATTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TACGAACTTCGAATTATGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>AGATAATTTGACGCATTTCTTTCCATGGTCTATGTTTCAGTTCCAGATTAGAAAAAAGTGAGGCGACTGAAAATTGGCGACGAAGACTCATCTGAGAATCCCATCAACTTCATGTATTCTGAAAGTTTCCAAAAAAAACCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTTTGAATGGGTCACGGATAATGGTTTTAATTGAACATAATTCGAAGTTCGTA</canonical_amplicon>
		<polymorphic_amplicon>AGATAATTTGACGCATTTCTTTCCATGGTCTATGTTTCAGTTCCAGATTAGAAAAAAGTGAGGCGACTGAAAATTGGCGACGAAGACTCATCTGAGAATCCCATCAACTTCATGTATTCTGAAAGTTTCCAAAAAAAAYCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTTTGAATGGGTCACGGATAATGGTTTTAATTGAACATAATTCGAAGTTCGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15154</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>25238</contig_pos>
        <strand>+</strand>
        <context>TTGAATGGGT[C/T]AYGGATAATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTTTGAATGGGT</left_flank>
        <right_flank>ACGGATAATGGTTTTAATTGAACATAATTCGAAGTTCGTATATCTTCTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTCTTTGTGCTAAACCGCACTCTTTTGGGCCTGATTCACCAACATTCGTGCATGGCTTTCCCCGTGATCAGTTTCCTATATCATTTTTACACTGTAACCAACAAATTAACTCCCTACATTGTATGATTTTAACGTTCCAATAAAGCATGTAGACAAGATATGATGCATCGACCGGGAATGCTTCTCATTTGTTCAATGAACATGTTTCCTTATTCTCGACGATTGCTAACTCTGGTGTGTTCCAACATTACTTGTTGTAATTGGAGTCAGGGATGAATGTTATTGAAGATAAGATTACGATGAAGATAATTTGACGCATTTCTTTCCATGGTCTATGTTTCAGTTCCAGATTAGAAAAAAGTGAGGCGACTGAAAATTGGCGACGAAGACTCATCTGAGAATCCCATCAACTTCATGTATTCTGAAAGTTTCCAAAAAAAACCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTTTGAATGGGTCACGGATAATGGTTTTAATTGAACATAATTCGAAGTTCGTATATCTTCTTTGTATATGTAGTAGTCAGAAAAAATTGAAAAATAATTATGAAAAGAATTATGAATGGACATGTGAAACTTTTTTGATCTAAAACGAGTAAGATCAACAAAACACAAAAATAAGACTGGAGTCAATGAGCCATTATTCCCTCACACCCTTTCCTATTTTTCCTTATCACCTGTGCATTTTCTGCTCCTTTTTTTCCAGGGAATTCTGAGCTCAAAAATTGTGTGCCTACTCTTCATTCATCATGTCGCATTCTCTCTTTTTCGTTTTTCTTCTGTCCCACGTCTTCTTCTTCTTCTGGTCCCTTTCATTTTAAGGTAATTGGATTAATGTTATGCAAATGTGAGCTTTTTTTCAGCGTTGGAGGAGAGGAGAAAGAATGACTAAAAACATTTCCTTTGTTTAGTGAACCTAATTTTATTCGGTTGAAAACGTTTTCCGAACTTGAAGGTGTA</canonical>
            <polymorphic>GCTCTTTGTGCTAAACCGCACTCTTTTGGGCCTGATTCACCAACATTCGTGCATGGCTTTCCCCGTGATCAGTTTCCTATATCATTTTTACACTGTAACCAACAAATTAACTCCCTACATTGTATGATTTTAACGTTCCAATAAAGCATGTAGACAAGATATGATGCATCGACCGGGAATGCTTCTCATTTGTTCAATGAACATGTTTCCTTATTCTCGACGATTGCTAACTCTGGTGTGTTCCAACATTACTTGTTGTAATTGGAGTCAGGGATGAATGTTATTGAAGATAAGATTACGATGAAGATAATTTGACGCATTTCTTTCCATGGTCTATGTTTCAGTTCCAGATTAGAAAAAAGTGAGGCGACTGAAAATTGGCGACGAAGACTCATCTGAGAATCCCATCAACTTCATGTATTCTGAAAGTTTCCAAAAAAAACCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTTTGAATGGGTYACGGATAATGGTTTTAATTGAACATAATTCGAAGTTCGTATATCTTCTTTGTATATGTAGTAGTCAGAAAAAATTGAAAAATAATTATGAAAAGAATTATGAATGGACATGTGAAACTTTTTTGATCTAAAACGAGTAAGATCAACAAAACACAAAAATAAGACTGGAGTCAATGAGCCATTATTCCCTCACACCCTTTCCTATTTTTCCTTATCACCTGTGCATTTTCTGCTCCTTTTTTTCCAGGGAATTCTGAGCTCAAAAATTGTGTGCCTACTCTTCATTCATCATGTCGCATTCTCTCTTTTTCGTTTTTCTTCTGTCCCACGTCTTCTTCTTCTTCTGGTCCCTTTCATTTTAAGGTAATTGGATTAATGTTATGCAAATGTGAGCTTTTTTTCAGCGTTGGAGGAGAGGAGAAAGAATGACTAAAAACATTTCCTTTGTTTAGTGAACCTAATTTTATTCGGTTGAAAACGTTTTCCGAACTTGAAGGTGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>146 137 124 112 63 63 55 48 45 39 39 25 23 19 16 12 10 10 6 2 2 2 2</canonical_bands>
                <polymorphic_bands>249 146 124 63 63 55 48 45 39 39 25 23 19 16 12 10 10 6 2 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCCATCAACTTCATGTATTC</pcr_primer_p1>
		<pcr_primer_p2>GTTTTGTTGATCTTACTCGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCCCATCAACTTCATGTATTCTGAAAGTTTCCAAAAAAAACCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTTTGAATGGGTCACGGATAATGGTTTTAATTGAACATAATTCGAAGTTCGTATATCTTCTTTGTATATGTAGTAGTCAGAAAAAATTGAAAAATAATTATGAAAAGAATTATGAATGGACATGTGAAACTTTTTTGATCTAAAACGAGTAAGATCAACAAAAC</canonical_amplicon>
		<polymorphic_amplicon>ATCCCATCAACTTCATGTATTCTGAAAGTTTCCAAAAAAAACCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTTTGAATGGGTYACGGATAATGGTTTTAATTGAACATAATTCGAAGTTCGTATATCTTCTTTGTATATGTAGTAGTCAGAAAAAATTGAAAAATAATTATGAAAAGAATTATGAATGGACATGTGAAACTTTTTTGATCTAAAACGAGTAAGATCAACAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15155</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>25240</contig_pos>
        <strand>+</strand>
        <context>GAATGGGTYA[C/T]GGATAATGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTTTGAATGGGTCA</left_flank>
        <right_flank>GGATAATGGTTTTAATTGAACATAATTCGAAGTTCGTATATCTTCTTTGT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTTGTGCTAAACCGCACTCTTTTGGGCCTGATTCACCAACATTCGTGCATGGCTTTCCCCGTGATCAGTTTCCTATATCATTTTTACACTGTAACCAACAAATTAACTCCCTACATTGTATGATTTTAACGTTCCAATAAAGCATGTAGACAAGATATGATGCATCGACCGGGAATGCTTCTCATTTGTTCAATGAACATGTTTCCTTATTCTCGACGATTGCTAACTCTGGTGTGTTCCAACATTACTTGTTGTAATTGGAGTCAGGGATGAATGTTATTGAAGATAAGATTACGATGAAGATAATTTGACGCATTTCTTTCCATGGTCTATGTTTCAGTTCCAGATTAGAAAAAAGTGAGGCGACTGAAAATTGGCGACGAAGACTCATCTGAGAATCCCATCAACTTCATGTATTCTGAAAGTTTCCAAAAAAAACCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTTTGAATGGGTCACGGATAATGGTTTTAATTGAACATAATTCGAAGTTCGTATATCTTCTTTGTATATGTAGTAGTCAGAAAAAATTGAAAAATAATTATGAAAAGAATTATGAATGGACATGTGAAACTTTTTTGATCTAAAACGAGTAAGATCAACAAAACACAAAAATAAGACTGGAGTCAATGAGCCATTATTCCCTCACACCCTTTCCTATTTTTCCTTATCACCTGTGCATTTTCTGCTCCTTTTTTTCCAGGGAATTCTGAGCTCAAAAATTGTGTGCCTACTCTTCATTCATCATGTCGCATTCTCTCTTTTTCGTTTTTCTTCTGTCCCACGTCTTCTTCTTCTTCTGGTCCCTTTCATTTTAAGGTAATTGGATTAATGTTATGCAAATGTGAGCTTTTTTTCAGCGTTGGAGGAGAGGAGAAAGAATGACTAAAAACATTTCCTTTGTTTAGTGAACCTAATTTTATTCGGTTGAAAACGTTTTCCGAACTTGAAGGTGTAAT</canonical>
            <polymorphic>TCTTTGTGCTAAACCGCACTCTTTTGGGCCTGATTCACCAACATTCGTGCATGGCTTTCCCCGTGATCAGTTTCCTATATCATTTTTACACTGTAACCAACAAATTAACTCCCTACATTGTATGATTTTAACGTTCCAATAAAGCATGTAGACAAGATATGATGCATCGACCGGGAATGCTTCTCATTTGTTCAATGAACATGTTTCCTTATTCTCGACGATTGCTAACTCTGGTGTGTTCCAACATTACTTGTTGTAATTGGAGTCAGGGATGAATGTTATTGAAGATAAGATTACGATGAAGATAATTTGACGCATTTCTTTCCATGGTCTATGTTTCAGTTCCAGATTAGAAAAAAGTGAGGCGACTGAAAATTGGCGACGAAGACTCATCTGAGAATCCCATCAACTTCATGTATTCTGAAAGTTTCCAAAAAAAACCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTTTGAATGGGTCAYGGATAATGGTTTTAATTGAACATAATTCGAAGTTCGTATATCTTCTTTGTATATGTAGTAGTCAGAAAAAATTGAAAAATAATTATGAAAAGAATTATGAATGGACATGTGAAACTTTTTTGATCTAAAACGAGTAAGATCAACAAAACACAAAAATAAGACTGGAGTCAATGAGCCATTATTCCCTCACACCCTTTCCTATTTTTCCTTATCACCTGTGCATTTTCTGCTCCTTTTTTTCCAGGGAATTCTGAGCTCAAAAATTGTGTGCCTACTCTTCATTCATCATGTCGCATTCTCTCTTTTTCGTTTTTCTTCTGTCCCACGTCTTCTTCTTCTTCTGGTCCCTTTCATTTTAAGGTAATTGGATTAATGTTATGCAAATGTGAGCTTTTTTTCAGCGTTGGAGGAGAGGAGAAAGAATGACTAAAAACATTTCCTTTGTTTAGTGAACCTAATTTTATTCGGTTGAAAACGTTTTCCGAACTTGAAGGTGTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>146 137 124 112 63 63 55 48 45 39 39 25 23 19 16 12 10 8 6 4 2 2 2</canonical_bands>
                <polymorphic_bands>249 146 124 63 63 55 48 45 39 39 25 23 19 16 12 10 8 6 4 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 403 92</canonical_bands>
                <polymorphic_bands>908 92</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCCATCAACTTCATGTATTC</pcr_primer_p1>
		<pcr_primer_p2>GTTTTGTTGATCTTACTCGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCCCATCAACTTCATGTATTCTGAAAGTTTCCAAAAAAAACCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTTTGAATGGGTCACGGATAATGGTTTTAATTGAACATAATTCGAAGTTCGTATATCTTCTTTGTATATGTAGTAGTCAGAAAAAATTGAAAAATAATTATGAAAAGAATTATGAATGGACATGTGAAACTTTTTTGATCTAAAACGAGTAAGATCAACAAAAC</canonical_amplicon>
		<polymorphic_amplicon>ATCCCATCAACTTCATGTATTCTGAAAGTTTCCAAAAAAAACCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTTTGAATGGGTCAYGGATAATGGTTTTAATTGAACATAATTCGAAGTTCGTATATCTTCTTTGTATATGTAGTAGTCAGAAAAAATTGAAAAATAATTATGAAAAGAATTATGAATGGACATGTGAAACTTTTTTGATCTAAAACGAGTAAGATCAACAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15156</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>27158</contig_pos>
        <strand>+</strand>
        <context>GAAACGAATT[G/T]ATTCCTTCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGCATTTCAAAAAACCTAGATGACATCATTTAAACTTTTCGAAACGAATT</left_flank>
        <right_flank>ATTCCTTCTGGAACATTTATATCTCATTTACTCTTCGTTGTGCTTCATCC</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCCAAAAAGTTCGAAGTTGTTCTATAGAGTATTTCGATTTTTCAGCAAATATGACGTTTGCCATCTCTGACACTTTAGCATAGATAAGGTGATCATATTCTGAATAATTGATGTCGGTAAGAAATCCGCTGAAACGGATAACATTAGTCATGATCTTTGAAAGTTTTTTTGCCCTTCTCGAAATTTGAATCTTGTGGAGTTTGACATTTTCTTTTTCATATATTTTTCAACAAGCTTGTAAATGTATGAAATCTGATCCAAACTACTAGATCATTCAGCAACAACAGATCATTGTATGGAATTTCGGATTTTTGTTAGTTTCATAGAATATTCAATTTGGTCCAAGGAAGATACAGAACATTGAAAGATAGCGAGTAAAATTAACGCATATTCCGAACACTCATTGTCTATAGTATTCCCAACTTCGAGTTTTTTTTCTAGAATTTCCGCATTTCAAAAAACCTAGATGACATCATTTAAACTTTTCGAAACGAATTTATTCCTTCTGGAACATTTATATCTCATTTACTCTTCGTTGTGCTTCATCCAATTCTCCATACTCCTCCTCCCACACATGTGACAATAGATCATCGCGAATCTCTCAAATTTATTGAGGGAAGAAAAACGGAGAATAAGAAAAGAGACATGTCTCGTCGTCCCGGTTTCTTTTTGAATGTGTGTGTGTGTGCAAAAATGATAACAAGAGAGCAAAAGAAGAAGGAGAAGAAGAGCAGCTGTCCGGATCACAGGTCCGAGTAGAAAAACGAAAGTGTTGGGTGAATGAATAGAACGTAGGAATAAGAGAGTCAGACATTGGAAAGGTCGGGCGAGCTCCCGGGAGGGGGGAGCCAACGGTTTTTGAAACGTGGCGTTGGATCTAGTGAGCTAGATTCATCATTTCTGAGCTGCTCTTCTTTCACCATCATGACTCAATTTTGACCTGGATTTCATTTTTCGTGTAATTTCAACTCATAACTGTTTTTCCATGGTTTCAATGT</canonical>
            <polymorphic>TTCCCAAAAAGTTCGAAGTTGTTCTATAGAGTATTTCGATTTTTCAGCAAATATGACGTTTGCCATCTCTGACACTTTAGCATAGATAAGGTGATCATATTCTGAATAATTGATGTCGGTAAGAAATCCGCTGAAACGGATAACATTAGTCATGATCTTTGAAAGTTTTTTTGCCCTTCTCGAAATTTGAATCTTGTGGAGTTTGACATTTTCTTTTTCATATATTTTTCAACAAGCTTGTAAATGTATGAAATCTGATCCAAACTACTAGATCATTCAGCAACAACAGATCATTGTATGGAATTTCGGATTTTTGTTAGTTTCATAGAATATTCAATTTGGTCCAAGGAAGATACAGAACATTGAAAGATAGCGAGTAAAATTAACGCATATTCCGAACACTCATTGTCTATAGTATTCCCAACTTCGAGTTTTTTTTCTAGAATTTCCGCATTTCAAAAAACCTAGATGACATCATTTAAACTTTTCGAAACGAATTKATTCCTTCTGGAACATTTATATCTCATTTACTCTTCGTTGTGCTTCATCCAATTCTCCATACTCCTCCTCCCACACATGTGACAATAGATCATCGCGAATCTCTCAAATTTATTGAGGGAAGAAAAACGGAGAATAAGAAAAGAGACATGTCTCGTCGTCCCGGTTTCTTTTTGAATGTGTGTGTGTGTGCAAAAATGATAACAAGAGAGCAAAAGAAGAAGGAGAAGAAGAGCAGCTGTCCGGATCACAGGTCCGAGTAGAAAAACGAAAGTGTTGGGTGAATGAATAGAACGTAGGAATAAGAGAGTCAGACATTGGAAAGGTCGGGCGAGCTCCCGGGAGGGGGGAGCCAACGGTTTTTGAAACGTGGCGTTGGATCTAGTGAGCTAGATTCATCATTTCTGAGCTGCTCTTCTTTCACCATCATGACTCAATTTTGACCTGGATTTCATTTTTCGTGTAATTTCAACTCATAACTGTTTTTCCATGGTTTCAATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>394 183 142 118 111 52</canonical_bands>
                <polymorphic_bands>394 183 163 142 118</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTCCGAACACTCATTGTCTAT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTATTCTCCGTTTTTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATTCCGAACACTCATTGTCTATAGTATTCCCAACTTCGAGTTTTTTTTCTAGAATTTCCGCATTTCAAAAAACCTAGATGACATCATTTAAACTTTTCGAAACGAATTTATTCCTTCTGGAACATTTATATCTCATTTACTCTTCGTTGTGCTTCATCCAATTCTCCATACTCCTCCTCCCACACATGTGACAATAGATCATCGCGAATCTCTCAAATTTATTGAGGGAAGAAAAACGGAGAATAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TATTCCGAACACTCATTGTCTATAGTATTCCCAACTTCGAGTTTTTTTTCTAGAATTTCCGCATTTCAAAAAACCTAGATGACATCATTTAAACTTTTCGAAACGAATTKATTCCTTCTGGAACATTTATATCTCATTTACTCTTCGTTGTGCTTCATCCAATTCTCCATACTCCTCCTCCCACACATGTGACAATAGATCATCGCGAATCTCTCAAATTTATTGAGGGAAGAAAAACGGAGAATAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15157</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>27030</contig_pos>
        <strand>+</strand>
        <context>ATTGAAAGAT[A/G]GCGAGTAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCATAGAATATTCAATTTGGTCCAAGGAAGATACAGAACATTGAAAGAT</left_flank>
        <right_flank>GCGAGTAAAATTAACGCATATTCCGAACACTCATTGTCTATAGTATTCCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTGAAAGGTGAGTTTTTTGAGACTTTGAATTTTACTAACGGTGTTAATTTGTGGAGGTTAAGAAAAATGAAATACCAGATTCTACAATATTCAAAAAACTGCACCGGGCCTTCATAATATCATCCTTTCCCAAAAAGTTCGAAGTTGTTCTATAGAGTATTTCGATTTTTCAGCAAATATGACGTTTGCCATCTCTGACACTTTAGCATAGATAAGGTGATCATATTCTGAATAATTGATGTCGGTAAGAAATCCGCTGAAACGGATAACATTAGTCATGATCTTTGAAAGTTTTTTTGCCCTTCTCGAAATTTGAATCTTGTGGAGTTTGACATTTTCTTTTTCATATATTTTTCAACAAGCTTGTAAATGTATGAAATCTGATCCAAACTACTAGATCATTCAGCAACAACAGATCATTGTATGGAATTTCGGATTTTTGTTAGTTTCATAGAATATTCAATTTGGTCCAAGGAAGATACAGAACATTGAAAGATAGCGAGTAAAATTAACGCATATTCCGAACACTCATTGTCTATAGTATTCCCAACTTCGAGTTTTTTTTCTAGAATTTCCGCATTTCAAAAAACCTAGATGACATCATTTAAACTTTTCGAAACGAATTTATTCCTTCTGGAACATTTATATCTCATTTACTCTTCGTTGTGCTTCATCCAATTCTCCATACTCCTCCTCCCACACATGTGACAATAGATCATCGCGAATCTCTCAAATTTATTGAGGGAAGAAAAACGGAGAATAAGAAAAGAGACATGTCTCGTCGTCCCGGTTTCTTTTTGAATGTGTGTGTGTGTGCAAAAATGATAACAAGAGAGCAAAAGAAGAAGGAGAAGAAGAGCAGCTGTCCGGATCACAGGTCCGAGTAGAAAAACGAAAGTGTTGGGTGAATGAATAGAACGTAGGAATAAGAGAGTCAGACATTGGAAAGGTCGGGCGAGCTCCCGGGAGGGGGGAGCCAACGGTTTTTGAAACGTGGC</canonical>
            <polymorphic>ACCTGAAAGGTGAGTTTTTTGAGACTTTGAATTTTACTAACGGTGTTAATTTGTGGAGGTTAAGAAAAATGAAATACCAGATTCTACAATATTCAAAAAACTGCACCGGGCCTTCATAATATCATCCTTTCCCAAAAAGTTCGAAGTTGTTCTATAGAGTATTTCGATTTTTCAGCAAATATGACGTTTGCCATCTCTGACACTTTAGCATAGATAAGGTGATCATATTCTGAATAATTGATGTCGGTAAGAAATCCGCTGAAACGGATAACATTAGTCATGATCTTTGAAAGTTTTTTTGCCCTTCTCGAAATTTGAATCTTGTGGAGTTTGACATTTTCTTTTTCATATATTTTTCAACAAGCTTGTAAATGTATGAAATCTGATCCAAACTACTAGATCATTCAGCAACAACAGATCATTGTATGGAATTTCGGATTTTTGTTAGTTTCATAGAATATTCAATTTGGTCCAAGGAAGATACAGAACATTGAAAGATRGCGAGTAAAATTAACGCATATTCCGAACACTCATTGTCTATAGTATTCCCAACTTCGAGTTTTTTTTCTAGAATTTCCGCATTTCAAAAAACCTAGATGACATCATTTAAACTTTTCGAAACGAATTTATTCCTTCTGGAACATTTATATCTCATTTACTCTTCGTTGTGCTTCATCCAATTCTCCATACTCCTCCTCCCACACATGTGACAATAGATCATCGCGAATCTCTCAAATTTATTGAGGGAAGAAAAACGGAGAATAAGAAAAGAGACATGTCTCGTCGTCCCGGTTTCTTTTTGAATGTGTGTGTGTGTGCAAAAATGATAACAAGAGAGCAAAAGAAGAAGGAGAAGAAGAGCAGCTGTCCGGATCACAGGTCCGAGTAGAAAAACGAAAGTGTTGGGTGAATGAATAGAACGTAGGAATAAGAGAGTCAGACATTGGAAAGGTCGGGCGAGCTCCCGGGAGGGGGGAGCCAACGGTTTTTGAAACGTGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTGAATCTTGTGGAGTTTG</pcr_primer_p1>
		<pcr_primer_p2>CGAAGTTGGGAATACTATAGACA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATTTGAATCTTGTGGAGTTTGACATTTTCTTTTTCATATATTTTTCAACAAGCTTGTAAATGTATGAAATCTGATCCAAACTACTAGATCATTCAGCAACAACAGATCATTGTATGGAATTTCGGATTTTTGTTAGTTTCATAGAATATTCAATTTGGTCCAAGGAAGATACAGAACATTGAAAGATAGCGAGTAAAATTAACGCATATTCCGAACACTCATTGTCTATAGTATTCCCAACTTCG</canonical_amplicon>
		<polymorphic_amplicon>AATTTGAATCTTGTGGAGTTTGACATTTTCTTTTTCATATATTTTTCAACAAGCTTGTAAATGTATGAAATCTGATCCAAACTACTAGATCATTCAGCAACAACAGATCATTGTATGGAATTTCGGATTTTTGTTAGTTTCATAGAATATTCAATTTGGTCCAAGGAAGATACAGAACATTGAAAGATRGCGAGTAAAATTAACGCATATTCCGAACACTCATTGTCTATAGTATTCCCAACTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15160</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>26840</contig_pos>
        <strand></strand>
        <context>TGCCCTTCTC[G/A]RAATTTGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGAAACGGATAACATTAGTCATGATCTTTGAAAGTTTTTTTGCCCTTCTC</left_flank>
        <right_flank>AAATTTGAATCTTGTGGAGTTTGACATTTTCTTTTTCATATATTTTTCAA</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGTTTTTTTGGTTTCTCATTTTGCTCTTTTTTTGAAAGTAAATTATATTGTAAACCTTTCTAGGAATAACAAAAAAAGTTTTTTCTACTGGATTCTTAAAAATGTCAAAGTCATCTATAAATGGTAAAATGTGATTGGAAAACTCTGAAAGAGGATTTGAAAAACGATGTTTCGGTTCAAAAGGCAGAGACCTGAAAGGTGAGTTTTTTGAGACTTTGAATTTTACTAACGGTGTTAATTTGTGGAGGTTAAGAAAAATGAAATACCAGATTCTACAATATTCAAAAAACTGCACCGGGCCTTCATAATATCATCCTTTCCCAAAAAGTTCGAAGTTGTTCTATAGAGTATTTCGATTTTTCAGCAAATATGACGTTTGCCATCTCTGACACTTTAGCATAGATAAGGTGATCATATTCTGAATAATTGATGTCGGTAAGAAATCCGCTGAAACGGATAACATTAGTCATGATCTTTGAAAGTTTTTTTGCCCTTCTCGAAATTTGAATCTTGTGGAGTTTGACATTTTCTTTTTCATATATTTTTCAACAAGCTTGTAAATGTATGAAATCTGATCCAAACTACTAGATCATTCAGCAACAACAGATCATTGTATGGAATTTCGGATTTTTGTTAGTTTCATAGAATATTCAATTTGGTCCAAGGAAGATACAGAACATTGAAAGATAGCGAGTAAAATTAACGCATATTCCGAACACTCATTGTCTATAGTATTCCCAACTTCGAGTTTTTTTTCTAGAATTTCCGCATTTCAAAAAACCTAGATGACATCATTTAAACTTTTCGAAACGAATTTATTCCTTCTGGAACATTTATATCTCATTTACTCTTCGTTGTGCTTCATCCAATTCTCCATACTCCTCCTCCCACACATGTGACAATAGATCATCGCGAATCTCTCAAATTTATTGAGGGAAGAAAAACGGAGAATAAGAAAAGAGACATGTCTCGTCGTCCCGGTTTCTTTTTGAATGTGTG</canonical>
            <polymorphic>TCGTTTTTTTGGTTTCTCATTTTGCTCTTTTTTTGAAAGTAAATTATATTGTAAACCTTTCTAGGAATAACAAAAAAAGTTTTTTCTACTGGATTCTTAAAAATGTCAAAGTCATCTATAAATGGTAAAATGTGATTGGAAAACTCTGAAAGAGGATTTGAAAAACGATGTTTCGGTTCAAAAGGCAGAGACCTGAAAGGTGAGTTTTTTGAGACTTTGAATTTTACTAACGGTGTTAATTTGTGGAGGTTAAGAAAAATGAAATACCAGATTCTACAATATTCAAAAAACTGCACCGGGCCTTCATAATATCATCCTTTCCCAAAAAGTTCGAAGTTGTTCTATAGAGTATTTCGATTTTTCAGCAAATATGACGTTTGCCATCTCTGACACTTTAGCATAGATAAGGTGATCATATTCTGAATAATTGATGTCGGTAAGAAATCCGCTGAAACGGATAACATTAGTCATGATCTTTGAAAGTTTTTTTGCCCTTCTCRAAATTTGAATCTTGTGGAGTTTGACATTTTCTTTTTCATATATTTTTCAACAAGCTTGTAAATGTATGAAATCTGATCCAAACTACTAGATCATTCAGCAACAACAGATCATTGTATGGAATTTCGGATTTTTGTTAGTTTCATAGAATATTCAATTTGGTCCAAGGAAGATACAGAACATTGAAAGATAGCGAGTAAAATTAACGCATATTCCGAACACTCATTGTCTATAGTATTCCCAACTTCGAGTTTTTTTTCTAGAATTTCCGCATTTCAAAAAACCTAGATGACATCATTTAAACTTTTCGAAACGAATTTATTCCTTCTGGAACATTTATATCTCATTTACTCTTCGTTGTGCTTCATCCAATTCTCCATACTCCTCCTCCCACACATGTGACAATAGATCATCGCGAATCTCTCAAATTTATTGAGGGAAGAAAAACGGAGAATAAGAAAAGAGACATGTCTCGTCGTCCCGGTTTCTTTTTGAATGTGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>332 247 193 144 61 23</canonical_bands>
                <polymorphic_bands>391 332 193 61 23</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>469 261 88 86 68 28</canonical_bands>
                <polymorphic_bands>469 289 88 86 68</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATCTCTGACACTTTAGCATAG</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCCATACAATGATCTGTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CCATCTCTGACACTTTAGCATAGATAAGGTGATCATATTCTGAATAATTGATGTCGGTAAGAAATCCGCTGAAACGGATAACATTAGTCATGATCTTTGAAAGTTTTTTTGCCCTTCTCGAAATTTGAATCTTGTGGAGTTTGACATTTTCTTTTTCATATATTTTTCAACAAGCTTGTAAATGTATGAAATCTGATCCAAACTACTAGATCATTCAGCAACAACAGATCATTGTATGGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>CCATCTCTGACACTTTAGCATAGATAAGGTGATCATATTCTGAATAATTGATGTCGGTAAGAAATCCGCTGAAACGGATAACATTAGTCATGATCTTTGAAAGTTTTTTTGCCCTTCTCRAAATTTGAATCTTGTGGAGTTTGACATTTTCTTTTTCATATATTTTTCAACAAGCTTGTAAATGTATGAAATCTGATCCAAACTACTAGATCATTCAGCAACAACAGATCATTGTATGGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15161</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>28784</contig_pos>
        <strand>+</strand>
        <context>AAGTCCAAAA[A/G]TACCATTGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAA</left_flank>
        <right_flank>TACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATTCTAGAGATTTTTGTTTTCGAACATTCCGAGTTTCTGAAAGAAAAACACCTATTTTGGCACGGACCCCTTTCTAAATGTATGACATTTAGAAAATCTGAAAATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTATCTAAAGTACACCCCTCATTAAAAATAGTTTCACCTTGATTGGAGTTTCTCCATTCTTATCAAAGACAAAAAAACCAGTATTTATTAAACTAGTAGACAGTCTGATTTATCCGTTAAAACCCTAGATAAATAAAATCAAAGTATGGCTACATAAAGTCTGGTTTACGGTTCTTTTGTATATTAGAGAAAAAAACTAGTCAATTGAGTTCATCACACCCGGGTAGGCCTAGGATTATGAACCCCTCCAAGTTGATACTTGCTCAACTTATGGGTTCTTTCATTTCTCTGCTGATAGTTTGGCACGCACGAAACGCGATATGATGACGTAATTTGAAAAATGCAATAGCAAAGAGGGATAGAAAGAGAAAAAGTTGCAAAATCGTTTTTTTGACGCAATATGATCTAAATAC</canonical>
            <polymorphic>GTATTCTAGAGATTTTTGTTTTCGAACATTCCGAGTTTCTGAAAGAAAAACACCTATTTTGGCACGGACCCCTTTCTAAATGTATGACATTTAGAAAATCTGAAAATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAARTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTATCTAAAGTACACCCCTCATTAAAAATAGTTTCACCTTGATTGGAGTTTCTCCATTCTTATCAAAGACAAAAAAACCAGTATTTATTAAACTAGTAGACAGTCTGATTTATCCGTTAAAACCCTAGATAAATAAAATCAAAGTATGGCTACATAAAGTCTGGTTTACGGTTCTTTTGTATATTAGAGAAAAAAACTAGTCAATTGAGTTCATCACACCCGGGTAGGCCTAGGATTATGAACCCCTCCAAGTTGATACTTGCTCAACTTATGGGTTCTTTCATTTCTCTGCTGATAGTTTGGCACGCACGAAACGCGATATGATGACGTAATTTGAAAAATGCAATAGCAAAGAGGGATAGAAAGAGAAAAAGTTGCAAAATCGTTTTTTTGACGCAATATGATCTAAATAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>464 402 97 37</canonical_bands>
                <polymorphic_bands>464 402 134</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGAAACCTGATATTTACAGCTC</pcr_primer_p1>
		<pcr_primer_p2>ATAATCAACAAAACTGAAACAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTAT</canonical_amplicon>
		<polymorphic_amplicon>AGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAARTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15162</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>28763</contig_pos>
        <strand>+</strand>
        <context>AAATGCCGTT[G/T]TGCATTCAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTT</left_flank>
        <right_flank>TGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTGAATGGCTCACTCAAAAGTATTCTAGAGATTTTTGTTTTCGAACATTCCGAGTTTCTGAAAGAAAAACACCTATTTTGGCACGGACCCCTTTCTAAATGTATGACATTTAGAAAATCTGAAAATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTATCTAAAGTACACCCCTCATTAAAAATAGTTTCACCTTGATTGGAGTTTCTCCATTCTTATCAAAGACAAAAAAACCAGTATTTATTAAACTAGTAGACAGTCTGATTTATCCGTTAAAACCCTAGATAAATAAAATCAAAGTATGGCTACATAAAGTCTGGTTTACGGTTCTTTTGTATATTAGAGAAAAAAACTAGTCAATTGAGTTCATCACACCCGGGTAGGCCTAGGATTATGAACCCCTCCAAGTTGATACTTGCTCAACTTATGGGTTCTTTCATTTCTCTGCTGATAGTTTGGCACGCACGAAACGCGATATGATGACGTAATTTGAAAAATGCAATAGCAAAGAGGGATAGAAAGAGAAAAAGTTGCAAAATCGTTTTTTT</canonical>
            <polymorphic>CGTTGAATGGCTCACTCAAAAGTATTCTAGAGATTTTTGTTTTCGAACATTCCGAGTTTCTGAAAGAAAAACACCTATTTTGGCACGGACCCCTTTCTAAATGTATGACATTTAGAAAATCTGAAAATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTKTGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTATCTAAAGTACACCCCTCATTAAAAATAGTTTCACCTTGATTGGAGTTTCTCCATTCTTATCAAAGACAAAAAAACCAGTATTTATTAAACTAGTAGACAGTCTGATTTATCCGTTAAAACCCTAGATAAATAAAATCAAAGTATGGCTACATAAAGTCTGGTTTACGGTTCTTTTGTATATTAGAGAAAAAAACTAGTCAATTGAGTTCATCACACCCGGGTAGGCCTAGGATTATGAACCCCTCCAAGTTGATACTTGCTCAACTTATGGGTTCTTTCATTTCTCTGCTGATAGTTTGGCACGCACGAAACGCGATATGATGACGTAATTTGAAAAATGCAATAGCAAAGAGGGATAGAAAGAGAAAAAGTTGCAAAATCGTTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>180 115 91 90 87 83 76 59 46 29 29 25 22 20 16 14 12 4 2</canonical_bands>
                <polymorphic_bands>180 115 91 90 87 83 76 59 54 46 29 22 20 16 14 12 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGAAACCTGATATTTACAGCTC</pcr_primer_p1>
		<pcr_primer_p2>ATAATCAACAAAACTGAAACAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTAT</canonical_amplicon>
		<polymorphic_amplicon>AGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTKTGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15163</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>28706</contig_pos>
        <strand></strand>
        <context>TCTTTTTTTG[A/G]RTTGTTTAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTG</left_flank>
        <right_flank>ATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAAT</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAAACACTGCCAGGCACCGCGAGAACCGAAGTATAAAGCGTGTTGCGAAAGTTTGACGTTGAATGGCTCACTCAAAAGTATTCTAGAGATTTTTGTTTTCGAACATTCCGAGTTTCTGAAAGAAAAACACCTATTTTGGCACGGACCCCTTTCTAAATGTATGACATTTAGAAAATCTGAAAATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTATCTAAAGTACACCCCTCATTAAAAATAGTTTCACCTTGATTGGAGTTTCTCCATTCTTATCAAAGACAAAAAAACCAGTATTTATTAAACTAGTAGACAGTCTGATTTATCCGTTAAAACCCTAGATAAATAAAATCAAAGTATGGCTACATAAAGTCTGGTTTACGGTTCTTTTGTATATTAGAGAAAAAAACTAGTCAATTGAGTTCATCACACCCGGGTAGGCCTAGGATTATGAACCCCTCCAAGTTGATACTTGCTCAACTTATGGGTTCTTTCATTTCTCTGCTGATAGTTTGGCACGCACGAAACGCGATATGATGACGTAATTT</canonical>
            <polymorphic>CTAAACACTGCCAGGCACCGCGAGAACCGAAGTATAAAGCGTGTTGCGAAAGTTTGACGTTGAATGGCTCACTCAAAAGTATTCTAGAGATTTTTGTTTTCGAACATTCCGAGTTTCTGAAAGAAAAACACCTATTTTGGCACGGACCCCTTTCTAAATGTATGACATTTAGAAAATCTGAAAATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGRATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTATCTAAAGTACACCCCTCATTAAAAATAGTTTCACCTTGATTGGAGTTTCTCCATTCTTATCAAAGACAAAAAAACCAGTATTTATTAAACTAGTAGACAGTCTGATTTATCCGTTAAAACCCTAGATAAATAAAATCAAAGTATGGCTACATAAAGTCTGGTTTACGGTTCTTTTGTATATTAGAGAAAAAAACTAGTCAATTGAGTTCATCACACCCGGGTAGGCCTAGGATTATGAACCCCTCCAAGTTGATACTTGCTCAACTTATGGGTTCTTTCATTTCTCTGCTGATAGTTTGGCACGCACGAAACGCGATATGATGACGTAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>238 206 128 90 80 54 36 32 30 23 22 20 18 10 8 5</canonical_bands>
                <polymorphic_bands>238 206 128 90 80 54 40 36 30 23 22 20 18 10 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGAAACCTGATATTTACAGCTC</pcr_primer_p1>
		<pcr_primer_p2>ATAATCAACAAAACTGAAACAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTAT</canonical_amplicon>
		<polymorphic_amplicon>AGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGRATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15164</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>28671</contig_pos>
        <strand>+</strand>
        <context>TTAGATGTTC[A/T]GAAATTTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTC</left_flank>
        <right_flank>GAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAAACTCAATGTTTTAGACAGTCAATTAGGTTTCTAAACACTGCCAGGCACCGCGAGAACCGAAGTATAAAGCGTGTTGCGAAAGTTTGACGTTGAATGGCTCACTCAAAAGTATTCTAGAGATTTTTGTTTTCGAACATTCCGAGTTTCTGAAAGAAAAACACCTATTTTGGCACGGACCCCTTTCTAAATGTATGACATTTAGAAAATCTGAAAATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTATCTAAAGTACACCCCTCATTAAAAATAGTTTCACCTTGATTGGAGTTTCTCCATTCTTATCAAAGACAAAAAAACCAGTATTTATTAAACTAGTAGACAGTCTGATTTATCCGTTAAAACCCTAGATAAATAAAATCAAAGTATGGCTACATAAAGTCTGGTTTACGGTTCTTTTGTATATTAGAGAAAAAAACTAGTCAATTGAGTTCATCACACCCGGGTAGGCCTAGGATTATGAACCCCTCCAAGTTGATACTTGCTCAACTTATGGGTTCTTTCATTTCTCTGCTGATAGTT</canonical>
            <polymorphic>ATCAAACTCAATGTTTTAGACAGTCAATTAGGTTTCTAAACACTGCCAGGCACCGCGAGAACCGAAGTATAAAGCGTGTTGCGAAAGTTTGACGTTGAATGGCTCACTCAAAAGTATTCTAGAGATTTTTGTTTTCGAACATTCCGAGTTTCTGAAAGAAAAACACCTATTTTGGCACGGACCCCTTTCTAAATGTATGACATTTAGAAAATCTGAAAATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCWGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTATCTAAAGTACACCCCTCATTAAAAATAGTTTCACCTTGATTGGAGTTTCTCCATTCTTATCAAAGACAAAAAAACCAGTATTTATTAAACTAGTAGACAGTCTGATTTATCCGTTAAAACCCTAGATAAATAAAATCAAAGTATGGCTACATAAAGTCTGGTTTACGGTTCTTTTGTATATTAGAGAAAAAAACTAGTCAATTGAGTTCATCACACCCGGGTAGGCCTAGGATTATGAACCCCTCCAAGTTGATACTTGCTCAACTTATGGGTTCTTTCATTTCTCTGCTGATAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAGATATTTGATGGTGGAGT</pcr_primer_p1>
		<pcr_primer_p2>CATTTTTGTACCTGATGTGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>ATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATG</canonical_amplicon>
		<polymorphic_amplicon>ATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCWGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15165</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>28616</contig_pos>
        <strand></strand>
        <context>ACAAAATCTA[T/G]GAGGTTGTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTA</left_flank>
        <right_flank>GAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACTAGGTAAACTTATGTTAAAATTGTTCACTTGAAAGTCATACATATTAATATATCAAACTCAATGTTTTAGACAGTCAATTAGGTTTCTAAACACTGCCAGGCACCGCGAGAACCGAAGTATAAAGCGTGTTGCGAAAGTTTGACGTTGAATGGCTCACTCAAAAGTATTCTAGAGATTTTTGTTTTCGAACATTCCGAGTTTCTGAAAGAAAAACACCTATTTTGGCACGGACCCCTTTCTAAATGTATGACATTTAGAAAATCTGAAAATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTATCTAAAGTACACCCCTCATTAAAAATAGTTTCACCTTGATTGGAGTTTCTCCATTCTTATCAAAGACAAAAAAACCAGTATTTATTAAACTAGTAGACAGTCTGATTTATCCGTTAAAACCCTAGATAAATAAAATCAAAGTATGGCTACATAAAGTCTGGTTTACGGTTCTTTTGTATATTAGAGAAAAAAACTAGTCAATTGAGTTCATCACACCCGGGTAGGCCTAGGATTATGAACCC</canonical>
            <polymorphic>TGACTAGGTAAACTTATGTTAAAATTGTTCACTTGAAAGTCATACATATTAATATATCAAACTCAATGTTTTAGACAGTCAATTAGGTTTCTAAACACTGCCAGGCACCGCGAGAACCGAAGTATAAAGCGTGTTGCGAAAGTTTGACGTTGAATGGCTCACTCAAAAGTATTCTAGAGATTTTTGTTTTCGAACATTCCGAGTTTCTGAAAGAAAAACACCTATTTTGGCACGGACCCCTTTCTAAATGTATGACATTTAGAAAATCTGAAAATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTAKGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTATCTAAAGTACACCCCTCATTAAAAATAGTTTCACCTTGATTGGAGTTTCTCCATTCTTATCAAAGACAAAAAAACCAGTATTTATTAAACTAGTAGACAGTCTGATTTATCCGTTAAAACCCTAGATAAATAAAATCAAAGTATGGCTACATAAAGTCTGGTTTACGGTTCTTTTGTATATTAGAGAAAAAAACTAGTCAATTGAGTTCATCACACCCGGGTAGGCCTAGGATTATGAACCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAGATATTTGATGGTGGAGT</pcr_primer_p1>
		<pcr_primer_p2>CATTTTTGTACCTGATGTGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>ATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATG</canonical_amplicon>
		<polymorphic_amplicon>ATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTAKGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15166</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>28595</contig_pos>
        <strand>+</strand>
        <context>ATAAGTTTTK[A/C]AAATTAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTA</left_flank>
        <right_flank>AAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGGAAGTGGGCACAGTCATTGACTAGGTAAACTTATGTTAAAATTGTTCACTTGAAAGTCATACATATTAATATATCAAACTCAATGTTTTAGACAGTCAATTAGGTTTCTAAACACTGCCAGGCACCGCGAGAACCGAAGTATAAAGCGTGTTGCGAAAGTTTGACGTTGAATGGCTCACTCAAAAGTATTCTAGAGATTTTTGTTTTCGAACATTCCGAGTTTCTGAAAGAAAAACACCTATTTTGGCACGGACCCCTTTCTAAATGTATGACATTTAGAAAATCTGAAAATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTATCTAAAGTACACCCCTCATTAAAAATAGTTTCACCTTGATTGGAGTTTCTCCATTCTTATCAAAGACAAAAAAACCAGTATTTATTAAACTAGTAGACAGTCTGATTTATCCGTTAAAACCCTAGATAAATAAAATCAAAGTATGGCTACATAAAGTCTGGTTTACGGTTCTTTTGTATATTAGAGAAAAAAACTAGTCAATTGAGTTCATCACACCCGGG</canonical>
            <polymorphic>AGTGGAAGTGGGCACAGTCATTGACTAGGTAAACTTATGTTAAAATTGTTCACTTGAAAGTCATACATATTAATATATCAAACTCAATGTTTTAGACAGTCAATTAGGTTTCTAAACACTGCCAGGCACCGCGAGAACCGAAGTATAAAGCGTGTTGCGAAAGTTTGACGTTGAATGGCTCACTCAAAAGTATTCTAGAGATTTTTGTTTTCGAACATTCCGAGTTTCTGAAAGAAAAACACCTATTTTGGCACGGACCCCTTTCTAAATGTATGACATTTAGAAAATCTGAAAATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTAMAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTATCTAAAGTACACCCCTCATTAAAAATAGTTTCACCTTGATTGGAGTTTCTCCATTCTTATCAAAGACAAAAAAACCAGTATTTATTAAACTAGTAGACAGTCTGATTTATCCGTTAAAACCCTAGATAAATAAAATCAAAGTATGGCTACATAAAGTCTGGTTTACGGTTCTTTTGTATATTAGAGAAAAAAACTAGTCAATTGAGTTCATCACACCCGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAGATATTTGATGGTGGAGT</pcr_primer_p1>
		<pcr_primer_p2>CATTTTTGTACCTGATGTGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>ATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATG</canonical_amplicon>
		<polymorphic_amplicon>ATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTAMAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15167</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>28584</contig_pos>
        <strand>+</strand>
        <context>GCAGTAATTG[C/T]ATAAGTTTTK</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTG</left_flank>
        <right_flank>ATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAAAAGAAGAGTGGAAGTGGGCACAGTCATTGACTAGGTAAACTTATGTTAAAATTGTTCACTTGAAAGTCATACATATTAATATATCAAACTCAATGTTTTAGACAGTCAATTAGGTTTCTAAACACTGCCAGGCACCGCGAGAACCGAAGTATAAAGCGTGTTGCGAAAGTTTGACGTTGAATGGCTCACTCAAAAGTATTCTAGAGATTTTTGTTTTCGAACATTCCGAGTTTCTGAAAGAAAAACACCTATTTTGGCACGGACCCCTTTCTAAATGTATGACATTTAGAAAATCTGAAAATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTATCTAAAGTACACCCCTCATTAAAAATAGTTTCACCTTGATTGGAGTTTCTCCATTCTTATCAAAGACAAAAAAACCAGTATTTATTAAACTAGTAGACAGTCTGATTTATCCGTTAAAACCCTAGATAAATAAAATCAAAGTATGGCTACATAAAGTCTGGTTTACGGTTCTTTTGTATATTAGAGAAAAAAACTAGTCAATTGAGTTCA</canonical>
            <polymorphic>GGAAAAAGAAGAGTGGAAGTGGGCACAGTCATTGACTAGGTAAACTTATGTTAAAATTGTTCACTTGAAAGTCATACATATTAATATATCAAACTCAATGTTTTAGACAGTCAATTAGGTTTCTAAACACTGCCAGGCACCGCGAGAACCGAAGTATAAAGCGTGTTGCGAAAGTTTGACGTTGAATGGCTCACTCAAAAGTATTCTAGAGATTTTTGTTTTCGAACATTCCGAGTTTCTGAAAGAAAAACACCTATTTTGGCACGGACCCCTTTCTAAATGTATGACATTTAGAAAATCTGAAAATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGYATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTATCTAAAGTACACCCCTCATTAAAAATAGTTTCACCTTGATTGGAGTTTCTCCATTCTTATCAAAGACAAAAAAACCAGTATTTATTAAACTAGTAGACAGTCTGATTTATCCGTTAAAACCCTAGATAAATAAAATCAAAGTATGGCTACATAAAGTCTGGTTTACGGTTCTTTTGTATATTAGAGAAAAAAACTAGTCAATTGAGTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACACGAGCCAAAGAGTAAAC</pcr_primer_p1>
		<pcr_primer_p2>TATCAGGTTTCTCTCACAACCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATA</canonical_amplicon>
		<polymorphic_amplicon>ATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGYATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15168</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>28484</contig_pos>
        <strand>+</strand>
        <context>CTTTCAATTT[C/T]TTTTTGACTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTT</left_flank>
        <right_flank>TTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCATAACAAACCGATGCGATTCGGCAGTACACGGCATCGTTATCCAAGCAGTGATGACAATGATTCGATCGATTCGATGTCAGTTGGGCAGAAACAGAAGGAAAAAGAAGAGTGGAAGTGGGCACAGTCATTGACTAGGTAAACTTATGTTAAAATTGTTCACTTGAAAGTCATACATATTAATATATCAAACTCAATGTTTTAGACAGTCAATTAGGTTTCTAAACACTGCCAGGCACCGCGAGAACCGAAGTATAAAGCGTGTTGCGAAAGTTTGACGTTGAATGGCTCACTCAAAAGTATTCTAGAGATTTTTGTTTTCGAACATTCCGAGTTTCTGAAAGAAAAACACCTATTTTGGCACGGACCCCTTTCTAAATGTATGACATTTAGAAAATCTGAAAATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTATCTAAAGTACACCCCTCATTAAAAATAGTTTCACCTTGATTGGAGTTTCTCCATTCTTATCAAAGACAAAAAAACCAGTATTTATTAAACTAGTAGACAGTCTGATTTAT</canonical>
            <polymorphic>GTCATAACAAACCGATGCGATTCGGCAGTACACGGCATCGTTATCCAAGCAGTGATGACAATGATTCGATCGATTCGATGTCAGTTGGGCAGAAACAGAAGGAAAAAGAAGAGTGGAAGTGGGCACAGTCATTGACTAGGTAAACTTATGTTAAAATTGTTCACTTGAAAGTCATACATATTAATATATCAAACTCAATGTTTTAGACAGTCAATTAGGTTTCTAAACACTGCCAGGCACCGCGAGAACCGAAGTATAAAGCGTGTTGCGAAAGTTTGACGTTGAATGGCTCACTCAAAAGTATTCTAGAGATTTTTGTTTTCGAACATTCCGAGTTTCTGAAAGAAAAACACCTATTTTGGCACGGACCCCTTTCTAAATGTATGACATTTAGAAAATCTGAAAATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTTYTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTATCTAAAGTACACCCCTCATTAAAAATAGTTTCACCTTGATTGGAGTTTCTCCATTCTTATCAAAGACAAAAAAACCAGTATTTATTAAACTAGTAGACAGTCTGATTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACACGAGCCAAAGAGTAAAC</pcr_primer_p1>
		<pcr_primer_p2>TATCAGGTTTCTCTCACAACCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATA</canonical_amplicon>
		<polymorphic_amplicon>ATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTTYTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15169</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>28468</contig_pos>
        <strand>+</strand>
        <context>CTTACTAGAA[C/T]TTTTCCTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAA</left_flank>
        <right_flank>TTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACGTTGAAGCTTCGGTCATAACAAACCGATGCGATTCGGCAGTACACGGCATCGTTATCCAAGCAGTGATGACAATGATTCGATCGATTCGATGTCAGTTGGGCAGAAACAGAAGGAAAAAGAAGAGTGGAAGTGGGCACAGTCATTGACTAGGTAAACTTATGTTAAAATTGTTCACTTGAAAGTCATACATATTAATATATCAAACTCAATGTTTTAGACAGTCAATTAGGTTTCTAAACACTGCCAGGCACCGCGAGAACCGAAGTATAAAGCGTGTTGCGAAAGTTTGACGTTGAATGGCTCACTCAAAAGTATTCTAGAGATTTTTGTTTTCGAACATTCCGAGTTTCTGAAAGAAAAACACCTATTTTGGCACGGACCCCTTTCTAAATGTATGACATTTAGAAAATCTGAAAATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTATCTAAAGTACACCCCTCATTAAAAATAGTTTCACCTTGATTGGAGTTTCTCCATTCTTATCAAAGACAAAAAAACCAGTATTTATTAAACTAGT</canonical>
            <polymorphic>CTACGTTGAAGCTTCGGTCATAACAAACCGATGCGATTCGGCAGTACACGGCATCGTTATCCAAGCAGTGATGACAATGATTCGATCGATTCGATGTCAGTTGGGCAGAAACAGAAGGAAAAAGAAGAGTGGAAGTGGGCACAGTCATTGACTAGGTAAACTTATGTTAAAATTGTTCACTTGAAAGTCATACATATTAATATATCAAACTCAATGTTTTAGACAGTCAATTAGGTTTCTAAACACTGCCAGGCACCGCGAGAACCGAAGTATAAAGCGTGTTGCGAAAGTTTGACGTTGAATGGCTCACTCAAAAGTATTCTAGAGATTTTTGTTTTCGAACATTCCGAGTTTCTGAAAGAAAAACACCTATTTTGGCACGGACCCCTTTCTAAATGTATGACATTTAGAAAATCTGAAAATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAAYTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTATCTAAAGTACACCCCTCATTAAAAATAGTTTCACCTTGATTGGAGTTTCTCCATTCTTATCAAAGACAAAAAAACCAGTATTTATTAAACTAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACACGAGCCAAAGAGTAAAC</pcr_primer_p1>
		<pcr_primer_p2>TATCAGGTTTCTCTCACAACCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATA</canonical_amplicon>
		<polymorphic_amplicon>ATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAAYTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15170</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>28457</contig_pos>
        <strand>+</strand>
        <context>CATTCAAATG[C/T]CTTACTAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATG</left_flank>
        <right_flank>CTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTATAAATTCTACGTTGAAGCTTCGGTCATAACAAACCGATGCGATTCGGCAGTACACGGCATCGTTATCCAAGCAGTGATGACAATGATTCGATCGATTCGATGTCAGTTGGGCAGAAACAGAAGGAAAAAGAAGAGTGGAAGTGGGCACAGTCATTGACTAGGTAAACTTATGTTAAAATTGTTCACTTGAAAGTCATACATATTAATATATCAAACTCAATGTTTTAGACAGTCAATTAGGTTTCTAAACACTGCCAGGCACCGCGAGAACCGAAGTATAAAGCGTGTTGCGAAAGTTTGACGTTGAATGGCTCACTCAAAAGTATTCTAGAGATTTTTGTTTTCGAACATTCCGAGTTTCTGAAAGAAAAACACCTATTTTGGCACGGACCCCTTTCTAAATGTATGACATTTAGAAAATCTGAAAATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTATCTAAAGTACACCCCTCATTAAAAATAGTTTCACCTTGATTGGAGTTTCTCCATTCTTATCAAAGACAAAAAAACCAGTATTT</canonical>
            <polymorphic>TGCTATAAATTCTACGTTGAAGCTTCGGTCATAACAAACCGATGCGATTCGGCAGTACACGGCATCGTTATCCAAGCAGTGATGACAATGATTCGATCGATTCGATGTCAGTTGGGCAGAAACAGAAGGAAAAAGAAGAGTGGAAGTGGGCACAGTCATTGACTAGGTAAACTTATGTTAAAATTGTTCACTTGAAAGTCATACATATTAATATATCAAACTCAATGTTTTAGACAGTCAATTAGGTTTCTAAACACTGCCAGGCACCGCGAGAACCGAAGTATAAAGCGTGTTGCGAAAGTTTGACGTTGAATGGCTCACTCAAAAGTATTCTAGAGATTTTTGTTTTCGAACATTCCGAGTTTCTGAAAGAAAAACACCTATTTTGGCACGGACCCCTTTCTAAATGTATGACATTTAGAAAATCTGAAAATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGYCTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTATCTAAAGTACACCCCTCATTAAAAATAGTTTCACCTTGATTGGAGTTTCTCCATTCTTATCAAAGACAAAAAAACCAGTATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACACGAGCCAAAGAGTAAAC</pcr_primer_p1>
		<pcr_primer_p2>TATCAGGTTTCTCTCACAACCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATA</canonical_amplicon>
		<polymorphic_amplicon>ATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGYCTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15171</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>28417</contig_pos>
        <strand>+</strand>
        <context>TAAACAAATT[A/G]TACTCACTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATGACATTTAGAAAATCTGAAAATACACGAGCCAAAGAGTAAACAAATT</left_flank>
        <right_flank>TACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTCATCTCTAATACAAGTTGTATTAATTGCTTTGAACTTGCTATAAATTCTACGTTGAAGCTTCGGTCATAACAAACCGATGCGATTCGGCAGTACACGGCATCGTTATCCAAGCAGTGATGACAATGATTCGATCGATTCGATGTCAGTTGGGCAGAAACAGAAGGAAAAAGAAGAGTGGAAGTGGGCACAGTCATTGACTAGGTAAACTTATGTTAAAATTGTTCACTTGAAAGTCATACATATTAATATATCAAACTCAATGTTTTAGACAGTCAATTAGGTTTCTAAACACTGCCAGGCACCGCGAGAACCGAAGTATAAAGCGTGTTGCGAAAGTTTGACGTTGAATGGCTCACTCAAAAGTATTCTAGAGATTTTTGTTTTCGAACATTCCGAGTTTCTGAAAGAAAAACACCTATTTTGGCACGGACCCCTTTCTAAATGTATGACATTTAGAAAATCTGAAAATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTATCTAAAGTACACCCCTCATTAAAAATAGTTTCACCTTGATTGG</canonical>
            <polymorphic>TTGTCATCTCTAATACAAGTTGTATTAATTGCTTTGAACTTGCTATAAATTCTACGTTGAAGCTTCGGTCATAACAAACCGATGCGATTCGGCAGTACACGGCATCGTTATCCAAGCAGTGATGACAATGATTCGATCGATTCGATGTCAGTTGGGCAGAAACAGAAGGAAAAAGAAGAGTGGAAGTGGGCACAGTCATTGACTAGGTAAACTTATGTTAAAATTGTTCACTTGAAAGTCATACATATTAATATATCAAACTCAATGTTTTAGACAGTCAATTAGGTTTCTAAACACTGCCAGGCACCGCGAGAACCGAAGTATAAAGCGTGTTGCGAAAGTTTGACGTTGAATGGCTCACTCAAAAGTATTCTAGAGATTTTTGTTTTCGAACATTCCGAGTTTCTGAAAGAAAAACACCTATTTTGGCACGGACCCCTTTCTAAATGTATGACATTTAGAAAATCTGAAAATACACGAGCCAAAGAGTAAACAAATTRTACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTATCTAAAGTACACCCCTCATTAAAAATAGTTTCACCTTGATTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGGCTCACTCAAAAGTATTCTA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCAAATTTTCAGAGTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>ATGGCTCACTCAAAAGTATTCTAGAGATTTTTGTTTTCGAACATTCCGAGTTTCTGAAAGAAAAACACCTATTTTGGCACGGACCCCTTTCTAAATGTATGACATTTAGAAAATCTGAAAATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATGGCTCACTCAAAAGTATTCTAGAGATTTTTGTTTTCGAACATTCCGAGTTTCTGAAAGAAAAACACCTATTTTGGCACGGACCCCTTTCTAAATGTATGACATTTAGAAAATCTGAAAATACACGAGCCAAAGAGTAAACAAATTRTACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15172</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>90547</contig_pos>
        <strand></strand>
        <context>GAGTTGTCAT[T/C]CTCCTTCTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTGATCGGAGCCCGTGGCTTCAGCGTATGTGGGTGGCTCCGAGTTGTCAT</left_flank>
        <right_flank>CTCCTTCTCCTCATTCACGGCACCCAAATTCAATCTTTCATTAATCCAGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGGGGGAATGCAGAAGAAAGAGATGAAAAATTGACAACGAGGAGAAATTATAATTTTGCAAAAAACTATTCTGTTTTGGGAAAAAATGTTTGAGAGAAAAGGCACCAAGAAAGAAGAAATGCAAGAAAGAACTGTGGGATGGGGGAGAGATGAGAAATATTAAATATGTCCGATTAATACGAGGTGACATCTAGATTTTTGACCAAAGAAACAAGAAATGTTGAGCATGTGGAGTTGAAAAAGATGAACCGGTTTCCCAGGAATTGAGATGAACAGGAGGGATGTAGTTGTTAGGAGGAGTTTCATTTGAGGCACATCGGAATGGACCTGCAGCGGAGAAAGGGCGACCTAAAAGCCAATATTGAGTTATTCATTTCAATTGTATGGTGCAATTACCATCAAACATTTTCTCTTTACTCTTGAATGACTTCAGCATGTTGGTGGGTACTGATCGGAGCCCGTGGCTTCAGCGTATGTGGGTGGCTCCGAGTTGTCATTCTCCTTCTCCTCATTCACGGCACCCAAATTCAATCTTTCATTAATCCAGAGGGGCAGTTGACGTTTGTGTTCGCGACGGATGAAAAAGGACGAGCGATACCCCTCTCCAGAGTCTCCATTGCTCGTAGATCCGCTTGCGACGGTTTTGTTGCAACGAACACTGGGATCTTTATAACAATGTCCCTGGCCAACAATCCACTCATTTTAATCCTCTTTTGAAGCACATAGGACACCGAAATTATTTGGGCATTGAATGATTGTGCAACTTCTTGGGGAACAGAAAGGGTATATGTCCCACATTTCATTTCTCCTAGTTTCGTATCGAGAATAAAAGGATCCGTAGAGCATTCAATGTGTTTGTCCGTTTTGAAGCAAAAATGTGATGCAGAGTAGAACTGGATAAGGCATTGAAGCACTGATTCGGCCGGAGTTGAAAATGATTCCTTTAGCCTTCTGGGAGCCGTGCCATAGCATATTTTTGTCGTTCTGCAACTCCAAAA</canonical>
            <polymorphic>TCAGGGGGAATGCAGAAGAAAGAGATGAAAAATTGACAACGAGGAGAAATTATAATTTTGCAAAAAACTATTCTGTTTTGGGAAAAAATGTTTGAGAGAAAAGGCACCAAGAAAGAAGAAATGCAAGAAAGAACTGTGGGATGGGGGAGAGATGAGAAATATTAAATATGTCCGATTAATACGAGGTGACATCTAGATTTTTGACCAAAGAAACAAGAAATGTTGAGCATGTGGAGTTGAAAAAGATGAACCGGTTTCCCAGGAATTGAGATGAACAGGAGGGATGTAGTTGTTAGGAGGAGTTTCATTTGAGGCACATCGGAATGGACCTGCAGCGGAGAAAGGGCGACCTAAAAGCCAATATTGAGTTATTCATTTCAATTGTATGGTGCAATTACCATCAAACATTTTCTCTTTACTCTTGAATGACTTCAGCATGTTGGTGGGTACTGATCGGAGCCCGTGGCTTCAGCGTATGTGGGTGGCTCCGAGTTGTCATYCTCCTTCTCCTCATTCACGGCACCCAAATTCAATCTTTCATTAATCCAGAGGGGCAGTTGACGTTTGTGTTCGCGACGGATGAAAAAGGACGAGCGATACCCCTCTCCAGAGTCTCCATTGCTCGTAGATCCGCTTGCGACGGTTTTGTTGCAACGAACACTGGGATCTTTATAACAATGTCCCTGGCCAACAATCCACTCATTTTAATCCTCTTTTGAAGCACATAGGACACCGAAATTATTTGGGCATTGAATGATTGTGCAACTTCTTGGGGAACAGAAAGGGTATATGTCCCACATTTCATTTCTCCTAGTTTCGTATCGAGAATAAAAGGATCCGTAGAGCATTCAATGTGTTTGTCCGTTTTGAAGCAAAAATGTGATGCAGAGTAGAACTGGATAAGGCATTGAAGCACTGATTCGGCCGGAGTTGAAAATGATTCCTTTAGCCTTCTGGGAGCCGTGCCATAGCATATTTTTGTCGTTCTGCAACTCCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTACCATCAAACATTTTCTC</pcr_primer_p1>
		<pcr_primer_p2>GATCTACGAGCAATGGAGACT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CAATTACCATCAAACATTTTCTCTTTACTCTTGAATGACTTCAGCATGTTGGTGGGTACTGATCGGAGCCCGTGGCTTCAGCGTATGTGGGTGGCTCCGAGTTGTCATTCTCCTTCTCCTCATTCACGGCACCCAAATTCAATCTTTCATTAATCCAGAGGGGCAGTTGACGTTTGTGTTCGCGACGGATGAAAAAGGACGAGCGATACCCCTCTCCAGAGTCTCCATTGCTCGTAGATC</canonical_amplicon>
		<polymorphic_amplicon>CAATTACCATCAAACATTTTCTCTTTACTCTTGAATGACTTCAGCATGTTGGTGGGTACTGATCGGAGCCCGTGGCTTCAGCGTATGTGGGTGGCTCCGAGTTGTCATYCTCCTTCTCCTCATTCACGGCACCCAAATTCAATCTTTCATTAATCCAGAGGGGCAGTTGACGTTTGTGTTCGCGACGGATGAAAAAGGACGAGCGATACCCCTCTCCAGAGTCTCCATTGCTCGTAGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15173</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>92460</contig_pos>
        <strand>+</strand>
        <context>GGAAACATAT[G/T]GGGTAACTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAGTTTGAGCAGTTTCTTCAAAAAAATATGGGACAGGCTGGAAACATAT</left_flank>
        <right_flank>GGGTAACTGTTTAAATAGTACTAGTTATAGTTTAAAAATAGGTATCTCAT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTCAGCACTTACAGGTCCAAGCTGCATACAAAAATTTTTTTAAGCGTGAGGTTCATGTTTGACAAAAAACATCTATCGGAAAAAAGTGGACACCAGAATGTAAATGCAAAACGCAGCCAATTTTGGGGACACCAAAGAAGACTGCTCTCAATAACCTCTCTGTGGAATGGGCCCCTAAAAACCACCCCAAAAAAAGAGGGGGAAAGATCGCTGCTAAAAATGTGAAAGAAGTGAAATGAGAAGTGAATGTGTTTACGAGATTGGGCATCCAGATATAGCCCCGCCCACTCGGAACATCTGTGGAGATTTCGAAATAGGAGTGGTCCCAAAATATGAGGCAGTTTATTATGAAATCCGAGCTTGGAACAATTTTTTGAAAAATAATGATGATGAGGAACACAGACTATAACTTGCTAATGTTATGATAAAACAAGTAGCAGATAAGAAAGTTTGAGCAGTTTCTTCAAAAAAATATGGGACAGGCTGGAAACATATGGGGTAACTGTTTAAATAGTACTAGTTATAGTTTAAAAATAGGTATCTCATAGAACTACTTCAGCTAACGTATCAAAATTGATAACTTTATGTTGGTTACTACAACCTTCAATATCTCTGCTTGTTTTGAAACTTTACGAAAGGTCACACCTGTCTTCCTGCCTCAGTACGGTTACAGGGCGACTGACCCAGACTCCCAAAACTCGTCTTGATGAAGAGAAATAAAAATTAGCATGGTTCTCTTATGATTAACGTCCAAATAAAAATCTCATATGAGTAGAAGTACATACAGATGTTCCGACGGTCAACGATCACGAGTACCCTCTAAAAACATACAGACAATTGGAAAAAGGGAAAAGAAGCCACCTGTTGAACACATGAGAGTTGTGCCGGGCGGTGTACCCTTTGGGCTATGCAGGAATTTGCTAAGAAAACAGTAAACATGTTTTGAGGTTAAAAAAGGAAAGCTTCAGGGACGTTATATTGGTAAGGACTGATTCA</canonical>
            <polymorphic>TTTTTTCAGCACTTACAGGTCCAAGCTGCATACAAAAATTTTTTTAAGCGTGAGGTTCATGTTTGACAAAAAACATCTATCGGAAAAAAGTGGACACCAGAATGTAAATGCAAAACGCAGCCAATTTTGGGGACACCAAAGAAGACTGCTCTCAATAACCTCTCTGTGGAATGGGCCCCTAAAAACCACCCCAAAAAAAGAGGGGGAAAGATCGCTGCTAAAAATGTGAAAGAAGTGAAATGAGAAGTGAATGTGTTTACGAGATTGGGCATCCAGATATAGCCCCGCCCACTCGGAACATCTGTGGAGATTTCGAAATAGGAGTGGTCCCAAAATATGAGGCAGTTTATTATGAAATCCGAGCTTGGAACAATTTTTTGAAAAATAATGATGATGAGGAACACAGACTATAACTTGCTAATGTTATGATAAAACAAGTAGCAGATAAGAAAGTTTGAGCAGTTTCTTCAAAAAAATATGGGACAGGCTGGAAACATATKGGGTAACTGTTTAAATAGTACTAGTTATAGTTTAAAAATAGGTATCTCATAGAACTACTTCAGCTAACGTATCAAAATTGATAACTTTATGTTGGTTACTACAACCTTCAATATCTCTGCTTGTTTTGAAACTTTACGAAAGGTCACACCTGTCTTCCTGCCTCAGTACGGTTACAGGGCGACTGACCCAGACTCCCAAAACTCGTCTTGATGAAGAGAAATAAAAATTAGCATGGTTCTCTTATGATTAACGTCCAAATAAAAATCTCATATGAGTAGAAGTACATACAGATGTTCCGACGGTCAACGATCACGAGTACCCTCTAAAAACATACAGACAATTGGAAAAAGGGAAAAGAAGCCACCTGTTGAACACATGAGAGTTGTGCCGGGCGGTGTACCCTTTGGGCTATGCAGGAATTTGCTAAGAAAACAGTAAACATGTTTTGAGGTTAAAAAAGGAAAGCTTCAGGGACGTTATATTGGTAAGGACTGATTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATATG</site>
                <isoschizomers>
                    <enzyme>FauNDI</enzyme>
                    <enzyme>NdeI</enzyme>
                </isoschizomers>
                <canonical_bands>496 274 230</canonical_bands>
                <polymorphic_bands>770 230</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAATGATGATGAGGAACACAGA</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTCAAAACAAGCAGAGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAATGATGATGAGGAACACAGACTATAACTTGCTAATGTTATGATAAAACAAGTAGCAGATAAGAAAGTTTGAGCAGTTTCTTCAAAAAAATATGGGACAGGCTGGAAACATATGGGGTAACTGTTTAAATAGTACTAGTTATAGTTTAAAAATAGGTATCTCATAGAACTACTTCAGCTAACGTATCAAAATTGATAACTTTATGTTGGTTACTACAACCTTCAATATCTCTGCTTGTTTTGAAACTT</canonical_amplicon>
		<polymorphic_amplicon>ATAATGATGATGAGGAACACAGACTATAACTTGCTAATGTTATGATAAAACAAGTAGCAGATAAGAAAGTTTGAGCAGTTTCTTCAAAAAAATATGGGACAGGCTGGAAACATATKGGGTAACTGTTTAAATAGTACTAGTTATAGTTTAAAAATAGGTATCTCATAGAACTACTTCAGCTAACGTATCAAAATTGATAACTTTATGTTGGTTACTACAACCTTCAATATCTCTGCTTGTTTTGAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15174</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>112366</contig_pos>
        <strand>+</strand>
        <context>TTGAGAAGAA[A/G]AGACACTTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTGCATCCATGGAGAGATTCAGACGTATTGGACACAGCTTGAGAAGAA</left_flank>
        <right_flank>AGACACTTGTGAGCTATTTATTTGAAAAAAGTTTCAAATTAAAAGTTTGT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATATGATATTTCACTCAGTTTTTAGTTGAATGATATTTTCAAAAGGAACCGAGATAGTTGTGATCTAACTACCGTAAAACCTCTATTAGAAGGGTCCTTTTATTGCTTCAAGGTATCTTCGGGGGCCCTTCTAATACAGAATCCTTTCTTTTCCTTGAAAAGTTCGGTGTATTCGTACGGAAATTTTTAATTTTAAGCAGCCCATTTTGAGGGGGGCCTTTTATTTTTTCAAACCTCACTTGGAGGGCCCTCCTGTTACATGAGTCCTTCTAATATGGGTTTGCGGTATCTCTAAACTAATTCTCCACCTCTCCAACTTTTCCCAATTCAGAAATGGAGCCAACATTCTCCATCGACTTCGATGAACAATACTATGTACCCGGTAATTGTGTACGGGGATCTCTTACAATTCGGAATCAAAGTGCTATCCACGCCCTATCACTGAAAATTTGCATCCATGGAGAGATTCAGACGTATTGGACACAGCTTGAGAAGAAGAGACACTTGTGAGCTATTTATTTGAAAAAAGTTTCAAATTAAAAGTTTGTAGAAAATCTGGGCATCCAGTATCTCACTGCCATCATCATACCAAGCCTCCAGAAAATAAAACTTTCAAAAGTCATATCAATATCCTCGAAGGTGTTTCGCAACCATGGAGCTCCATAGACAATCCAGTGAGTCATTTTTTGAACTGCGTTCCCAAAATTTCAATAGTTGTTTTCAGTCTAATAGAATTCCGATCGGAGTAAATATTTTCCCATTTGTTTTCCAACTACCATTCAGTTGTCCACCAAGTTTCGAGGGTACTCATGGTTGCGTCCGATATACAGTTCATGTTGAATTGAATCGCCCATGGAGGTTGGACGTTGAAGCGAGGAGGGCGTTTACAGGTATAGCAAACCGCCTAAATGGAAAAATTAAACTTTAATTTTAAGTTCTGCCAATAATCGATCTAACAGCAATTCCAAAAATTCGCAATCCAGTGATGGACCATGCTT</canonical>
            <polymorphic>TAATATGATATTTCACTCAGTTTTTAGTTGAATGATATTTTCAAAAGGAACCGAGATAGTTGTGATCTAACTACCGTAAAACCTCTATTAGAAGGGTCCTTTTATTGCTTCAAGGTATCTTCGGGGGCCCTTCTAATACAGAATCCTTTCTTTTCCTTGAAAAGTTCGGTGTATTCGTACGGAAATTTTTAATTTTAAGCAGCCCATTTTGAGGGGGGCCTTTTATTTTTTCAAACCTCACTTGGAGGGCCCTCCTGTTACATGAGTCCTTCTAATATGGGTTTGCGGTATCTCTAAACTAATTCTCCACCTCTCCAACTTTTCCCAATTCAGAAATGGAGCCAACATTCTCCATCGACTTCGATGAACAATACTATGTACCCGGTAATTGTGTACGGGGATCTCTTACAATTCGGAATCAAAGTGCTATCCACGCCCTATCACTGAAAATTTGCATCCATGGAGAGATTCAGACGTATTGGACACAGCTTGAGAAGAARAGACACTTGTGAGCTATTTATTTGAAAAAAGTTTCAAATTAAAAGTTTGTAGAAAATCTGGGCATCCAGTATCTCACTGCCATCATCATACCAAGCCTCCAGAAAATAAAACTTTCAAAAGTCATATCAATATCCTCGAAGGTGTTTCGCAACCATGGAGCTCCATAGACAATCCAGTGAGTCATTTTTTGAACTGCGTTCCCAAAATTTCAATAGTTGTTTTCAGTCTAATAGAATTCCGATCGGAGTAAATATTTTCCCATTTGTTTTCCAACTACCATTCAGTTGTCCACCAAGTTTCGAGGGTACTCATGGTTGCGTCCGATATACAGTTCATGTTGAATTGAATCGCCCATGGAGGTTGGACGTTGAAGCGAGGAGGGCGTTTACAGGTATAGCAAACCGCCTAAATGGAAAAATTAAACTTTAATTTTAAGTTCTGCCAATAATCGATCTAACAGCAATTCCAAAAATTCGCAATCCAGTGATGGACCATGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGACTTCGATGAACAATACTA</pcr_primer_p1>
		<pcr_primer_p2>GTATGATGATGGCAGTGAGATAC</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>ATCGACTTCGATGAACAATACTATGTACCCGGTAATTGTGTACGGGGATCTCTTACAATTCGGAATCAAAGTGCTATCCACGCCCTATCACTGAAAATTTGCATCCATGGAGAGATTCAGACGTATTGGACACAGCTTGAGAAGAAGAGACACTTGTGAGCTATTTATTTGAAAAAAGTTTCAAATTAAAAGTTTGTAGAAAATCTGGGCATCCAGTATCTCACTGCCATCATCATAC</canonical_amplicon>
		<polymorphic_amplicon>ATCGACTTCGATGAACAATACTATGTACCCGGTAATTGTGTACGGGGATCTCTTACAATTCGGAATCAAAGTGCTATCCACGCCCTATCACTGAAAATTTGCATCCATGGAGAGATTCAGACGTATTGGACACAGCTTGAGAAGAARAGACACTTGTGAGCTATTTATTTGAAAAAAGTTTCAAATTAAAAGTTTGTAGAAAATCTGGGCATCCAGTATCTCACTGCCATCATCATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15175</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>112383</contig_pos>
        <strand>+</strand>
        <context>TTGTGAGCTA[A/T]TTATTTGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATTCAGACGTATTGGACACAGCTTGAGAAGAAGAGACACTTGTGAGCTA</left_flank>
        <right_flank>TTATTTGAAAAAAGTTTCAAATTAAAAGTTTGTAGAAAATCTGGGCATCC</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTTTTTAGTTGAATGATATTTTCAAAAGGAACCGAGATAGTTGTGATCTAACTACCGTAAAACCTCTATTAGAAGGGTCCTTTTATTGCTTCAAGGTATCTTCGGGGGCCCTTCTAATACAGAATCCTTTCTTTTCCTTGAAAAGTTCGGTGTATTCGTACGGAAATTTTTAATTTTAAGCAGCCCATTTTGAGGGGGGCCTTTTATTTTTTCAAACCTCACTTGGAGGGCCCTCCTGTTACATGAGTCCTTCTAATATGGGTTTGCGGTATCTCTAAACTAATTCTCCACCTCTCCAACTTTTCCCAATTCAGAAATGGAGCCAACATTCTCCATCGACTTCGATGAACAATACTATGTACCCGGTAATTGTGTACGGGGATCTCTTACAATTCGGAATCAAAGTGCTATCCACGCCCTATCACTGAAAATTTGCATCCATGGAGAGATTCAGACGTATTGGACACAGCTTGAGAAGAAGAGACACTTGTGAGCTATTTATTTGAAAAAAGTTTCAAATTAAAAGTTTGTAGAAAATCTGGGCATCCAGTATCTCACTGCCATCATCATACCAAGCCTCCAGAAAATAAAACTTTCAAAAGTCATATCAATATCCTCGAAGGTGTTTCGCAACCATGGAGCTCCATAGACAATCCAGTGAGTCATTTTTTGAACTGCGTTCCCAAAATTTCAATAGTTGTTTTCAGTCTAATAGAATTCCGATCGGAGTAAATATTTTCCCATTTGTTTTCCAACTACCATTCAGTTGTCCACCAAGTTTCGAGGGTACTCATGGTTGCGTCCGATATACAGTTCATGTTGAATTGAATCGCCCATGGAGGTTGGACGTTGAAGCGAGGAGGGCGTTTACAGGTATAGCAAACCGCCTAAATGGAAAAATTAAACTTTAATTTTAAGTTCTGCCAATAATCGATCTAACAGCAATTCCAAAAATTCGCAATCCAGTGATGGACCATGCTTGCAAACATTCTGGATTC</canonical>
            <polymorphic>CAGTTTTTAGTTGAATGATATTTTCAAAAGGAACCGAGATAGTTGTGATCTAACTACCGTAAAACCTCTATTAGAAGGGTCCTTTTATTGCTTCAAGGTATCTTCGGGGGCCCTTCTAATACAGAATCCTTTCTTTTCCTTGAAAAGTTCGGTGTATTCGTACGGAAATTTTTAATTTTAAGCAGCCCATTTTGAGGGGGGCCTTTTATTTTTTCAAACCTCACTTGGAGGGCCCTCCTGTTACATGAGTCCTTCTAATATGGGTTTGCGGTATCTCTAAACTAATTCTCCACCTCTCCAACTTTTCCCAATTCAGAAATGGAGCCAACATTCTCCATCGACTTCGATGAACAATACTATGTACCCGGTAATTGTGTACGGGGATCTCTTACAATTCGGAATCAAAGTGCTATCCACGCCCTATCACTGAAAATTTGCATCCATGGAGAGATTCAGACGTATTGGACACAGCTTGAGAAGAAGAGACACTTGTGAGCTAWTTATTTGAAAAAAGTTTCAAATTAAAAGTTTGTAGAAAATCTGGGCATCCAGTATCTCACTGCCATCATCATACCAAGCCTCCAGAAAATAAAACTTTCAAAAGTCATATCAATATCCTCGAAGGTGTTTCGCAACCATGGAGCTCCATAGACAATCCAGTGAGTCATTTTTTGAACTGCGTTCCCAAAATTTCAATAGTTGTTTTCAGTCTAATAGAATTCCGATCGGAGTAAATATTTTCCCATTTGTTTTCCAACTACCATTCAGTTGTCCACCAAGTTTCGAGGGTACTCATGGTTGCGTCCGATATACAGTTCATGTTGAATTGAATCGCCCATGGAGGTTGGACGTTGAAGCGAGGAGGGCGTTTACAGGTATAGCAAACCGCCTAAATGGAAAAATTAAACTTTAATTTTAAGTTCTGCCAATAATCGATCTAACAGCAATTCCAAAAATTCGCAATCCAGTGATGGACCATGCTTGCAAACATTCTGGATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGACTTCGATGAACAATACTA</pcr_primer_p1>
		<pcr_primer_p2>GTATGATGATGGCAGTGAGATAC</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>ATCGACTTCGATGAACAATACTATGTACCCGGTAATTGTGTACGGGGATCTCTTACAATTCGGAATCAAAGTGCTATCCACGCCCTATCACTGAAAATTTGCATCCATGGAGAGATTCAGACGTATTGGACACAGCTTGAGAAGAAGAGACACTTGTGAGCTATTTATTTGAAAAAAGTTTCAAATTAAAAGTTTGTAGAAAATCTGGGCATCCAGTATCTCACTGCCATCATCATAC</canonical_amplicon>
		<polymorphic_amplicon>ATCGACTTCGATGAACAATACTATGTACCCGGTAATTGTGTACGGGGATCTCTTACAATTCGGAATCAAAGTGCTATCCACGCCCTATCACTGAAAATTTGCATCCATGGAGAGATTCAGACGTATTGGACACAGCTTGAGAAGAAGAGACACTTGTGAGCTAWTTATTTGAAAAAAGTTTCAAATTAAAAGTTTGTAGAAAATCTGGGCATCCAGTATCTCACTGCCATCATCATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15176</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>114158</contig_pos>
        <strand></strand>
        <context>aaaagaagaa[T/G]ATATATGGCC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GCATACTGGGGAAAACGAAAGAAGAAGCAGAAGAAGAAAAAAAAGAAGAA</left_flank>
        <right_flank>ATATATGGCCTTCAAAAAGGAGGAAATGTTTTGTTTCTTCTAAATCACAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTACCGGTAAATGTTTCCTTCCGAAATTGAATCGAAGAATTCTGAATAATAAATAATTCATTTCAACATCTCCCTTTCCTTTCTCATACATGTCTACTACTGGTTGATTGTCAGCTGCTCTCTGCTCCATAAAATTTTACGACACTGGTTTCTAGATTGCCTCAAGAGTGGGGAAGAAGTTAATCAAGGTAAAATGTCTCAATTGCTCCAAATATGGGGGAATACGGTGGGTTTATGGCTATGTACCCTTGGCTTCTGACTGCATTCCGCTTTTAATAAGGAAAAATACATTGAGTTGTAAGCTTATCACAAGAAGCAATTTATTTTTCATTCATTCCTTATTTTTTGCTTTCTGTAGTGATCATGAGCCCCTTCTATCCAGACATTATGAATCATACAACTTGTGAACAAATAAAAGAGGGGAAAAGGTTGGAACGGAGAATTTTGCATACTGGGGAAAACGAAAGAAGAAGCAGAAGAAGAAAAAAAAGAAGAATATATATGGCCTTCAAAAAGGAGGAAATGTTTTGTTTCTTCTAAATCACAACATTTTTGGATCCGGACAGCATCCATGGAATAACATAGCAGTATCTGTTTGAATTCCTACTGTAGAAGACAGAAGAGGGAATATATAGCCAGAATGATATAGTCTGTTGCTCAGCTAAAAGTACAAAGACAAAGACGCTGTCTTTTTGATGAATCAAAAAAAATGAATCTTACTGGAAAAGACTATCCCAGTGGAATTTTCGGATGGGTTGGACTTTTAAAAGTGCGATTTCTCATATAAGGAATATTTCAAGATAATTGAAATAAAGATTGGAAATACAGAAAAAATTGTAATACATTTTTCTTAGCAAAACCAGAATATCTTCAGAATAGGTTGAATAAAAAACAAGTTTTTTCAAGACCTATGTTATGAACAAAAATGGAAGCTTCATAACCCACAACTTCTCTGAAATATTAAATTTTAAACTCAGATTTTTCTAATATATATCGC</canonical>
            <polymorphic>CATTTACCGGTAAATGTTTCCTTCCGAAATTGAATCGAAGAATTCTGAATAATAAATAATTCATTTCAACATCTCCCTTTCCTTTCTCATACATGTCTACTACTGGTTGATTGTCAGCTGCTCTCTGCTCCATAAAATTTTACGACACTGGTTTCTAGATTGCCTCAAGAGTGGGGAAGAAGTTAATCAAGGTAAAATGTCTCAATTGCTCCAAATATGGGGGAATACGGTGGGTTTATGGCTATGTACCCTTGGCTTCTGACTGCATTCCGCTTTTAATAAGGAAAAATACATTGAGTTGTAAGCTTATCACAAGAAGCAATTTATTTTTCATTCATTCCTTATTTTTTGCTTTCTGTAGTGATCATGAGCCCCTTCTATCCAGACATTATGAATCATACAACTTGTGAACAAATAAAAGAGGGGAAAAGGTTGGAACGGAGAATTTTGCATACTGGGGAAAACGAAAGAAGAAGCAGAAGAAGAAAAAAAAGAAGAAKATATATGGCCTTCAAAAAGGAGGAAATGTTTTGTTTCTTCTAAATCACAACATTTTTGGATCCGGACAGCATCCATGGAATAACATAGCAGTATCTGTTTGAATTCCTACTGTAGAAGACAGAAGAGGGAATATATAGCCAGAATGATATAGTCTGTTGCTCAGCTAAAAGTACAAAGACAAAGACGCTGTCTTTTTGATGAATCAAAAAAAATGAATCTTACTGGAAAAGACTATCCCAGTGGAATTTTCGGATGGGTTGGACTTTTAAAAGTGCGATTTCTCATATAAGGAATATTTCAAGATAATTGAAATAAAGATTGGAAATACAGAAAAAATTGTAATACATTTTTCTTAGCAAAACCAGAATATCTTCAGAATAGGTTGAATAAAAAACAAGTTTTTTCAAGACCTATGTTATGAACAAAAATGGAAGCTTCATAACCCACAACTTCTCTGAAATATTAAATTTTAAACTCAGATTTTTCTAATATATATCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGCAATTTATTTTTCATTCA</pcr_primer_p1>
		<pcr_primer_p2>GATCCAAAAATGTTGTGATTTAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGAAGCAATTTATTTTTCATTCATTCCTTATTTTTTGCTTTCTGTAGTGATCATGAGCCCCTTCTATCCAGACATTATGAATCATACAACTTGTGAACAAATAAAAGAGGGGAAAAGGTTGGAACGGAGAATTTTGCATACTGGGGAAAACGAAAGAAGAAGCAGAAGAAGAAAAAAAAGAAGAATATATATGGCCTTCAAAAAGGAGGAAATGTTTTGTTTCTTCTAAATCACAACATTTTTGGATC</canonical_amplicon>
		<polymorphic_amplicon>AGAAGCAATTTATTTTTCATTCATTCCTTATTTTTTGCTTTCTGTAGTGATCATGAGCCCCTTCTATCCAGACATTATGAATCATACAACTTGTGAACAAATAAAAGAGGGGAAAAGGTTGGAACGGAGAATTTTGCATACTGGGGAAAACGAAAGAAGAAGCAGAAGAAGAAAAAAAAGAAGAAKATATATGGCCTTCAAAAAGGAGGAAATGTTTTGTTTCTTCTAAATCACAACATTTTTGGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15208</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>128488</contig_pos>
        <strand>+</strand>
        <context>CATACATTTT[G/T]AAATTGTCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTCCTGAATATTCTTCCTGCGAAAACAATTCTAAGTAGTCATACATTTT</left_flank>
        <right_flank>AAATTGTCTGCCGACTTTGAGTCCATATATCTCGGTTTCTGTAGAAGATA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCAGGGTCCCCTCCTTCCCCACCTAATTGTTTACCTCCTCCTCGGGAGACGCTTTTCGCTCCGCCCACTTTCTTATTCTCTCGCCAATGAGAGAGACGACCCCAGCTCCTCCTTCTCATCCTTTAGAAGACACTGTCTGTGCTCTTCCTTTTCTATTTAAGAGAATTTTGTGTTCATGTTTTCCAATCAGGTTGGTTTTCAGGAAGGCTACACTTGCTCCACCTGCAACACAGCTATGCCATCCCAGGCAGCTCTGACGAAGCACCGACCGATTTGTGAAGTGACCAATATGTATAAGCCATTGATGGCTCAGTTCGCCGGGCTTACTGTACCTAGTGGTATGGGAGCCATGGCCCAGTGTTGGCCACAGTTCATGCAGATGGCTGCTCAGGTTAGTAAAGTTTTAGAGCATTTTAGTTTTGGGAGCTCAGATTTTTTTTTCCAAACTTCCTGAATATTCTTCCTGCGAAAACAATTCTAAGTAGTCATACATTTTGAAATTGTCTGCCGACTTTGAGTCCATATATCTCGGTTTCTGTAGAAGATATAAAAAAGTGCTCAACTAACAAAATGTTTATCATAATATCAGAAATATTTTGTTTGTTGCCACCTTTTTGATATCTCTTACAGGAACCGACATATATACGCTCAAATTAGACGGTTGGGATCTCCTCCTACCAGAGTGTTTACGGTATCCTACCTCTGTCCACTAATCTAGGCATCATATTCCCGCATATCTATTGCTCTTAAGTGCCACGTGTATGATGCAATACTATAACTCCTTCGATGACCCCCCCCCCCCTCTCTCTCCCCTTGGTACCTTCTTGACACATGCCTCAAGATTCGCCAAAAGAGCCAAACAATATTACATACAATCCCACCTTAATTAACCTCTCCTTCTCCATATTCTCTCAATTTCCTGTAGTCCCCTAGCACCACCCAAGTGTCTTCAATTTCCCGCATAATCCTCTCATCGGGGAGGTCCTTCATCCCATTC</canonical>
            <polymorphic>TCTTCAGGGTCCCCTCCTTCCCCACCTAATTGTTTACCTCCTCCTCGGGAGACGCTTTTCGCTCCGCCCACTTTCTTATTCTCTCGCCAATGAGAGAGACGACCCCAGCTCCTCCTTCTCATCCTTTAGAAGACACTGTCTGTGCTCTTCCTTTTCTATTTAAGAGAATTTTGTGTTCATGTTTTCCAATCAGGTTGGTTTTCAGGAAGGCTACACTTGCTCCACCTGCAACACAGCTATGCCATCCCAGGCAGCTCTGACGAAGCACCGACCGATTTGTGAAGTGACCAATATGTATAAGCCATTGATGGCTCAGTTCGCCGGGCTTACTGTACCTAGTGGTATGGGAGCCATGGCCCAGTGTTGGCCACAGTTCATGCAGATGGCTGCTCAGGTTAGTAAAGTTTTAGAGCATTTTAGTTTTGGGAGCTCAGATTTTTTTTTCCAAACTTCCTGAATATTCTTCCTGCGAAAACAATTCTAAGTAGTCATACATTTTKAAATTGTCTGCCGACTTTGAGTCCATATATCTCGGTTTCTGTAGAAGATATAAAAAAGTGCTCAACTAACAAAATGTTTATCATAATATCAGAAATATTTTGTTTGTTGCCACCTTTTTGATATCTCTTACAGGAACCGACATATATACGCTCAAATTAGACGGTTGGGATCTCCTCCTACCAGAGTGTTTACGGTATCCTACCTCTGTCCACTAATCTAGGCATCATATTCCCGCATATCTATTGCTCTTAAGTGCCACGTGTATGATGCAATACTATAACTCCTTCGATGACCCCCCCCCCCCTCTCTCTCCCCTTGGTACCTTCTTGACACATGCCTCAAGATTCGCCAAAAGAGCCAAACAATATTACATACAATCCCACCTTAATTAACCTCTCCTTCTCCATATTCTCTCAATTTCCTGTAGTCCCCTAGCACCACCCAAGTGTCTTCAATTTCCCGCATAATCCTCTCATCGGGGAGGTCCTTCATCCCATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTTTTGGGAGCTCAGATTT</pcr_primer_p1>
		<pcr_primer_p2>AGATTAGTGGACAGAGGTAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>302</pcr_amplicon_size>
		<canonical_amplicon>TAGTTTTGGGAGCTCAGATTTTTTTTTCCAAACTTCCTGAATATTCTTCCTGCGAAAACAATTCTAAGTAGTCATACATTTTGAAATTGTCTGCCGACTTTGAGTCCATATATCTCGGTTTCTGTAGAAGATATAAAAAAGTGCTCAACTAACAAAATGTTTATCATAATATCAGAAATATTTTGTTTGTTGCCACCTTTTTGATATCTCTTACAGGAACCGACATATATACGCTCAAATTAGACGGTTGGGATCTCCTCCTACCAGAGTGTTTACGGTATCCTACCTCTGTCCACTAATCT</canonical_amplicon>
		<polymorphic_amplicon>TAGTTTTGGGAGCTCAGATTTTTTTTTCCAAACTTCCTGAATATTCTTCCTGCGAAAACAATTCTAAGTAGTCATACATTTTKAAATTGTCTGCCGACTTTGAGTCCATATATCTCGGTTTCTGTAGAAGATATAAAAAAGTGCTCAACTAACAAAATGTTTATCATAATATCAGAAATATTTTGTTTGTTGCCACCTTTTTGATATCTCTTACAGGAACCGACATATATACGCTCAAATTAGACGGTTGGGATCTCCTCCTACCAGAGTGTTTACGGTATCCTACCTCTGTCCACTAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15209</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>128654</contig_pos>
        <strand></strand>
        <context>attagacggt[T/A]gggatcwcct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTTGATATCTCTTACAGGAACCGACATATATACGCTCAAATTAGACGGT</left_flank>
        <right_flank>GGGATCTCCTCCTACCAGAGTGTTTACGGTATCCTACCTCTGTCCACTAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTGTGTTCATGTTTTCCAATCAGGTTGGTTTTCAGGAAGGCTACACTTGCTCCACCTGCAACACAGCTATGCCATCCCAGGCAGCTCTGACGAAGCACCGACCGATTTGTGAAGTGACCAATATGTATAAGCCATTGATGGCTCAGTTCGCCGGGCTTACTGTACCTAGTGGTATGGGAGCCATGGCCCAGTGTTGGCCACAGTTCATGCAGATGGCTGCTCAGGTTAGTAAAGTTTTAGAGCATTTTAGTTTTGGGAGCTCAGATTTTTTTTTCCAAACTTCCTGAATATTCTTCCTGCGAAAACAATTCTAAGTAGTCATACATTTTGAAATTGTCTGCCGACTTTGAGTCCATATATCTCGGTTTCTGTAGAAGATATAAAAAAGTGCTCAACTAACAAAATGTTTATCATAATATCAGAAATATTTTGTTTGTTGCCACCTTTTTGATATCTCTTACAGGAACCGACATATATACGCTCAAATTAGACGGTTGGGATCTCCTCCTACCAGAGTGTTTACGGTATCCTACCTCTGTCCACTAATCTAGGCATCATATTCCCGCATATCTATTGCTCTTAAGTGCCACGTGTATGATGCAATACTATAACTCCTTCGATGACCCCCCCCCCCCTCTCTCTCCCCTTGGTACCTTCTTGACACATGCCTCAAGATTCGCCAAAAGAGCCAAACAATATTACATACAATCCCACCTTAATTAACCTCTCCTTCTCCATATTCTCTCAATTTCCTGTAGTCCCCTAGCACCACCCAAGTGTCTTCAATTTCCCGCATAATCCTCTCATCGGGGAGGTCCTTCATCCCATTCCATAATGAGCTTTTTGTCAGGTACCACACTTCCCACTGCTCCTTGCCAATTCTGATTTCTTCAAAGTGATGCAACAACAACAACAGAATCAACCTTGCGCTTCTCCAGACGCCGAGTGTTCGTCGAGGTTCGTTTTTTTGTGAATTTTTTATAAGATGCAACTTTT</canonical>
            <polymorphic>AATTTTGTGTTCATGTTTTCCAATCAGGTTGGTTTTCAGGAAGGCTACACTTGCTCCACCTGCAACACAGCTATGCCATCCCAGGCAGCTCTGACGAAGCACCGACCGATTTGTGAAGTGACCAATATGTATAAGCCATTGATGGCTCAGTTCGCCGGGCTTACTGTACCTAGTGGTATGGGAGCCATGGCCCAGTGTTGGCCACAGTTCATGCAGATGGCTGCTCAGGTTAGTAAAGTTTTAGAGCATTTTAGTTTTGGGAGCTCAGATTTTTTTTTCCAAACTTCCTGAATATTCTTCCTGCGAAAACAATTCTAAGTAGTCATACATTTTGAAATTGTCTGCCGACTTTGAGTCCATATATCTCGGTTTCTGTAGAAGATATAAAAAAGTGCTCAACTAACAAAATGTTTATCATAATATCAGAAATATTTTGTTTGTTGCCACCTTTTTGATATCTCTTACAGGAACCGACATATATACGCTCAAATTAGACGGTWGGGATCTCCTCCTACCAGAGTGTTTACGGTATCCTACCTCTGTCCACTAATCTAGGCATCATATTCCCGCATATCTATTGCTCTTAAGTGCCACGTGTATGATGCAATACTATAACTCCTTCGATGACCCCCCCCCCCCTCTCTCTCCCCTTGGTACCTTCTTGACACATGCCTCAAGATTCGCCAAAAGAGCCAAACAATATTACATACAATCCCACCTTAATTAACCTCTCCTTCTCCATATTCTCTCAATTTCCTGTAGTCCCCTAGCACCACCCAAGTGTCTTCAATTTCCCGCATAATCCTCTCATCGGGGAGGTCCTTCATCCCATTCCATAATGAGCTTTTTGTCAGGTACCACACTTCCCACTGCTCCTTGCCAATTCTGATTTCTTCAAAGTGATGCAACAACAACAACAGAATCAACCTTGCGCTTCTCCAGACGCCGAGTGTTCGTCGAGGTTCGTTTTTTTGTGAATTTTTTATAAGATGCAACTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGAAAACAATTCTAAGTAGTCA</pcr_primer_p1>
		<pcr_primer_p2>TAGATTAGTGGACAGAGGTAGGA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCGAAAACAATTCTAAGTAGTCATACATTTTGAAATTGTCTGCCGACTTTGAGTCCATATATCTCGGTTTCTGTAGAAGATATAAAAAAGTGCTCAACTAACAAAATGTTTATCATAATATCAGAAATATTTTGTTTGTTGCCACCTTTTTGATATCTCTTACAGGAACCGACATATATACGCTCAAATTAGACGGTTGGGATCTCCTCCTACCAGAGTGTTTACGGTATCCTACCTCTGTCCACTAATCTA</canonical_amplicon>
		<polymorphic_amplicon>GCGAAAACAATTCTAAGTAGTCATACATTTTGAAATTGTCTGCCGACTTTGAGTCCATATATCTCGGTTTCTGTAGAAGATATAAAAAAGTGCTCAACTAACAAAATGTTTATCATAATATCAGAAATATTTTGTTTGTTGCCACCTTTTTGATATCTCTTACAGGAACCGACATATATACGCTCAAATTAGACGGTWGGGATCTCCTCCTACCAGAGTGTTTACGGTATCCTACCTCTGTCCACTAATCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15210</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>128661</contig_pos>
        <strand></strand>
        <context>ggtwgggatc[T/A]cctcctacca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATCTCTTACAGGAACCGACATATATACGCTCAAATTAGACGGTTGGGATC</left_flank>
        <right_flank>CCTCCTACCAGAGTGTTTACGGTATCCTACCTCTGTCCACTAATCTAGGC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTCATGTTTTCCAATCAGGTTGGTTTTCAGGAAGGCTACACTTGCTCCACCTGCAACACAGCTATGCCATCCCAGGCAGCTCTGACGAAGCACCGACCGATTTGTGAAGTGACCAATATGTATAAGCCATTGATGGCTCAGTTCGCCGGGCTTACTGTACCTAGTGGTATGGGAGCCATGGCCCAGTGTTGGCCACAGTTCATGCAGATGGCTGCTCAGGTTAGTAAAGTTTTAGAGCATTTTAGTTTTGGGAGCTCAGATTTTTTTTTCCAAACTTCCTGAATATTCTTCCTGCGAAAACAATTCTAAGTAGTCATACATTTTGAAATTGTCTGCCGACTTTGAGTCCATATATCTCGGTTTCTGTAGAAGATATAAAAAAGTGCTCAACTAACAAAATGTTTATCATAATATCAGAAATATTTTGTTTGTTGCCACCTTTTTGATATCTCTTACAGGAACCGACATATATACGCTCAAATTAGACGGTTGGGATCTCCTCCTACCAGAGTGTTTACGGTATCCTACCTCTGTCCACTAATCTAGGCATCATATTCCCGCATATCTATTGCTCTTAAGTGCCACGTGTATGATGCAATACTATAACTCCTTCGATGACCCCCCCCCCCCTCTCTCTCCCCTTGGTACCTTCTTGACACATGCCTCAAGATTCGCCAAAAGAGCCAAACAATATTACATACAATCCCACCTTAATTAACCTCTCCTTCTCCATATTCTCTCAATTTCCTGTAGTCCCCTAGCACCACCCAAGTGTCTTCAATTTCCCGCATAATCCTCTCATCGGGGAGGTCCTTCATCCCATTCCATAATGAGCTTTTTGTCAGGTACCACACTTCCCACTGCTCCTTGCCAATTCTGATTTCTTCAAAGTGATGCAACAACAACAACAGAATCAACCTTGCGCTTCTCCAGACGCCGAGTGTTCGTCGAGGTTCGTTTTTTTGTGAATTTTTTATAAGATGCAACTTTTCTATAGT</canonical>
            <polymorphic>TGTTCATGTTTTCCAATCAGGTTGGTTTTCAGGAAGGCTACACTTGCTCCACCTGCAACACAGCTATGCCATCCCAGGCAGCTCTGACGAAGCACCGACCGATTTGTGAAGTGACCAATATGTATAAGCCATTGATGGCTCAGTTCGCCGGGCTTACTGTACCTAGTGGTATGGGAGCCATGGCCCAGTGTTGGCCACAGTTCATGCAGATGGCTGCTCAGGTTAGTAAAGTTTTAGAGCATTTTAGTTTTGGGAGCTCAGATTTTTTTTTCCAAACTTCCTGAATATTCTTCCTGCGAAAACAATTCTAAGTAGTCATACATTTTGAAATTGTCTGCCGACTTTGAGTCCATATATCTCGGTTTCTGTAGAAGATATAAAAAAGTGCTCAACTAACAAAATGTTTATCATAATATCAGAAATATTTTGTTTGTTGCCACCTTTTTGATATCTCTTACAGGAACCGACATATATACGCTCAAATTAGACGGTTGGGATCWCCTCCTACCAGAGTGTTTACGGTATCCTACCTCTGTCCACTAATCTAGGCATCATATTCCCGCATATCTATTGCTCTTAAGTGCCACGTGTATGATGCAATACTATAACTCCTTCGATGACCCCCCCCCCCCTCTCTCTCCCCTTGGTACCTTCTTGACACATGCCTCAAGATTCGCCAAAAGAGCCAAACAATATTACATACAATCCCACCTTAATTAACCTCTCCTTCTCCATATTCTCTCAATTTCCTGTAGTCCCCTAGCACCACCCAAGTGTCTTCAATTTCCCGCATAATCCTCTCATCGGGGAGGTCCTTCATCCCATTCCATAATGAGCTTTTTGTCAGGTACCACACTTCCCACTGCTCCTTGCCAATTCTGATTTCTTCAAAGTGATGCAACAACAACAACAGAATCAACCTTGCGCTTCTCCAGACGCCGAGTGTTCGTCGAGGTTCGTTTTTTTGTGAATTTTTTATAAGATGCAACTTTTCTATAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGAAAACAATTCTAAGTAGTCA</pcr_primer_p1>
		<pcr_primer_p2>GATGCCTAGATTAGTGGACAGA</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>GCGAAAACAATTCTAAGTAGTCATACATTTTGAAATTGTCTGCCGACTTTGAGTCCATATATCTCGGTTTCTGTAGAAGATATAAAAAAGTGCTCAACTAACAAAATGTTTATCATAATATCAGAAATATTTTGTTTGTTGCCACCTTTTTGATATCTCTTACAGGAACCGACATATATACGCTCAAATTAGACGGTTGGGATCTCCTCCTACCAGAGTGTTTACGGTATCCTACCTCTGTCCACTAATCTAGGCATC</canonical_amplicon>
		<polymorphic_amplicon>GCGAAAACAATTCTAAGTAGTCATACATTTTGAAATTGTCTGCCGACTTTGAGTCCATATATCTCGGTTTCTGTAGAAGATATAAAAAAGTGCTCAACTAACAAAATGTTTATCATAATATCAGAAATATTTTGTTTGTTGCCACCTTTTTGATATCTCTTACAGGAACCGACATATATACGCTCAAATTAGACGGTTGGGATCWCCTCCTACCAGAGTGTTTACGGTATCCTACCTCTGTCCACTAATCTAGGCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15211</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>128782</contig_pos>
        <strand>+</strand>
        <context>CCTTCGATGA[A/C]CCCCCCYCCC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGCTCTTAAGTGCCACGTGTATGATGCAATACTATAACTCCTTCGATGA</left_flank>
        <right_flank>CCCCCCCCCCCTCTCTCTCCCCTTGGTACCTTCTTGACACATGCCTCAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATAAGCCATTGATGGCTCAGTTCGCCGGGCTTACTGTACCTAGTGGTATGGGAGCCATGGCCCAGTGTTGGCCACAGTTCATGCAGATGGCTGCTCAGGTTAGTAAAGTTTTAGAGCATTTTAGTTTTGGGAGCTCAGATTTTTTTTTCCAAACTTCCTGAATATTCTTCCTGCGAAAACAATTCTAAGTAGTCATACATTTTGAAATTGTCTGCCGACTTTGAGTCCATATATCTCGGTTTCTGTAGAAGATATAAAAAAGTGCTCAACTAACAAAATGTTTATCATAATATCAGAAATATTTTGTTTGTTGCCACCTTTTTGATATCTCTTACAGGAACCGACATATATACGCTCAAATTAGACGGTTGGGATCTCCTCCTACCAGAGTGTTTACGGTATCCTACCTCTGTCCACTAATCTAGGCATCATATTCCCGCATATCTATTGCTCTTAAGTGCCACGTGTATGATGCAATACTATAACTCCTTCGATGACCCCCCCCCCCCTCTCTCTCCCCTTGGTACCTTCTTGACACATGCCTCAAGATTCGCCAAAAGAGCCAAACAATATTACATACAATCCCACCTTAATTAACCTCTCCTTCTCCATATTCTCTCAATTTCCTGTAGTCCCCTAGCACCACCCAAGTGTCTTCAATTTCCCGCATAATCCTCTCATCGGGGAGGTCCTTCATCCCATTCCATAATGAGCTTTTTGTCAGGTACCACACTTCCCACTGCTCCTTGCCAATTCTGATTTCTTCAAAGTGATGCAACAACAACAACAGAATCAACCTTGCGCTTCTCCAGACGCCGAGTGTTCGTCGAGGTTCGTTTTTTTGTGAATTTTTTATAAGATGCAACTTTTCTATAGTTGGTGGCGGTGGCTTATTATGTATGCGCATTCTTCAGAGTACGCTTTATAACAGAAAAAGTTCTAGTATCAAGAATTTTTGATATTTCAGCGGTCATGCCAGCGAATCATCTCCCACCACA</canonical>
            <polymorphic>GTATAAGCCATTGATGGCTCAGTTCGCCGGGCTTACTGTACCTAGTGGTATGGGAGCCATGGCCCAGTGTTGGCCACAGTTCATGCAGATGGCTGCTCAGGTTAGTAAAGTTTTAGAGCATTTTAGTTTTGGGAGCTCAGATTTTTTTTTCCAAACTTCCTGAATATTCTTCCTGCGAAAACAATTCTAAGTAGTCATACATTTTGAAATTGTCTGCCGACTTTGAGTCCATATATCTCGGTTTCTGTAGAAGATATAAAAAAGTGCTCAACTAACAAAATGTTTATCATAATATCAGAAATATTTTGTTTGTTGCCACCTTTTTGATATCTCTTACAGGAACCGACATATATACGCTCAAATTAGACGGTTGGGATCTCCTCCTACCAGAGTGTTTACGGTATCCTACCTCTGTCCACTAATCTAGGCATCATATTCCCGCATATCTATTGCTCTTAAGTGCCACGTGTATGATGCAATACTATAACTCCTTCGATGAMCCCCCCCCCCCTCTCTCTCCCCTTGGTACCTTCTTGACACATGCCTCAAGATTCGCCAAAAGAGCCAAACAATATTACATACAATCCCACCTTAATTAACCTCTCCTTCTCCATATTCTCTCAATTTCCTGTAGTCCCCTAGCACCACCCAAGTGTCTTCAATTTCCCGCATAATCCTCTCATCGGGGAGGTCCTTCATCCCATTCCATAATGAGCTTTTTGTCAGGTACCACACTTCCCACTGCTCCTTGCCAATTCTGATTTCTTCAAAGTGATGCAACAACAACAACAGAATCAACCTTGCGCTTCTCCAGACGCCGAGTGTTCGTCGAGGTTCGTTTTTTTGTGAATTTTTTATAAGATGCAACTTTTCTATAGTTGGTGGCGGTGGCTTATTATGTATGCGCATTCTTCAGAGTACGCTTTATAACAGAAAAAGTTCTAGTATCAAGAATTTTTGATATTTCAGCGGTCATGCCAGCGAATCATCTCCCACCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCTACCTCTGTCCACTAATCT</pcr_primer_p1>
		<pcr_primer_p2>GGACTACAGGAAATTGAGAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>ATCCTACCTCTGTCCACTAATCTAGGCATCATATTCCCGCATATCTATTGCTCTTAAGTGCCACGTGTATGATGCAATACTATAACTCCTTCGATGACCCCCCCCCCCCTCTCTCTCCCCTTGGTACCTTCTTGACACATGCCTCAAGATTCGCCAAAAGAGCCAAACAATATTACATACAATCCCACCTTAATTAACCTCTCCTTCTCCATATTCTCTCAATTTCCTGTAGTCC</canonical_amplicon>
		<polymorphic_amplicon>ATCCTACCTCTGTCCACTAATCTAGGCATCATATTCCCGCATATCTATTGCTCTTAAGTGCCACGTGTATGATGCAATACTATAACTCCTTCGATGAMCCCCCCCCCCCTCTCTCTCCCCTTGGTACCTTCTTGACACATGCCTCAAGATTCGCCAAAAGAGCCAAACAATATTACATACAATCCCACCTTAATTAACCTCTCCTTCTCCATATTCTCTCAATTTCCTGTAGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15213</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>128812</contig_pos>
        <strand></strand>
        <context>CCCTTGGTAC[C/A]TTCTTGACAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TACTATAACTCCTTCGATGACCCCCCCCCCCCTCTCTCTCCCCTTGGTAC</left_flank>
        <right_flank>TTCTTGACACATGCCTCAAGATTCGCCAAAAGAGCCAAACAATATTACAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTTACTGTACCTAGTGGTATGGGAGCCATGGCCCAGTGTTGGCCACAGTTCATGCAGATGGCTGCTCAGGTTAGTAAAGTTTTAGAGCATTTTAGTTTTGGGAGCTCAGATTTTTTTTTCCAAACTTCCTGAATATTCTTCCTGCGAAAACAATTCTAAGTAGTCATACATTTTGAAATTGTCTGCCGACTTTGAGTCCATATATCTCGGTTTCTGTAGAAGATATAAAAAAGTGCTCAACTAACAAAATGTTTATCATAATATCAGAAATATTTTGTTTGTTGCCACCTTTTTGATATCTCTTACAGGAACCGACATATATACGCTCAAATTAGACGGTTGGGATCTCCTCCTACCAGAGTGTTTACGGTATCCTACCTCTGTCCACTAATCTAGGCATCATATTCCCGCATATCTATTGCTCTTAAGTGCCACGTGTATGATGCAATACTATAACTCCTTCGATGACCCCCCCCCCCCTCTCTCTCCCCTTGGTACCTTCTTGACACATGCCTCAAGATTCGCCAAAAGAGCCAAACAATATTACATACAATCCCACCTTAATTAACCTCTCCTTCTCCATATTCTCTCAATTTCCTGTAGTCCCCTAGCACCACCCAAGTGTCTTCAATTTCCCGCATAATCCTCTCATCGGGGAGGTCCTTCATCCCATTCCATAATGAGCTTTTTGTCAGGTACCACACTTCCCACTGCTCCTTGCCAATTCTGATTTCTTCAAAGTGATGCAACAACAACAACAGAATCAACCTTGCGCTTCTCCAGACGCCGAGTGTTCGTCGAGGTTCGTTTTTTTGTGAATTTTTTATAAGATGCAACTTTTCTATAGTTGGTGGCGGTGGCTTATTATGTATGCGCATTCTTCAGAGTACGCTTTATAACAGAAAAAGTTCTAGTATCAAGAATTTTTGATATTTCAGCGGTCATGCCAGCGAATCATCTCCCACCACAACCGAGCCAGTGGACCTTTCAGCCACCCCG</canonical>
            <polymorphic>GCTTACTGTACCTAGTGGTATGGGAGCCATGGCCCAGTGTTGGCCACAGTTCATGCAGATGGCTGCTCAGGTTAGTAAAGTTTTAGAGCATTTTAGTTTTGGGAGCTCAGATTTTTTTTTCCAAACTTCCTGAATATTCTTCCTGCGAAAACAATTCTAAGTAGTCATACATTTTGAAATTGTCTGCCGACTTTGAGTCCATATATCTCGGTTTCTGTAGAAGATATAAAAAAGTGCTCAACTAACAAAATGTTTATCATAATATCAGAAATATTTTGTTTGTTGCCACCTTTTTGATATCTCTTACAGGAACCGACATATATACGCTCAAATTAGACGGTTGGGATCTCCTCCTACCAGAGTGTTTACGGTATCCTACCTCTGTCCACTAATCTAGGCATCATATTCCCGCATATCTATTGCTCTTAAGTGCCACGTGTATGATGCAATACTATAACTCCTTCGATGACCCCCCCCCCCCTCTCTCTCCCCTTGGTACMTTCTTGACACATGCCTCAAGATTCGCCAAAAGAGCCAAACAATATTACATACAATCCCACCTTAATTAACCTCTCCTTCTCCATATTCTCTCAATTTCCTGTAGTCCCCTAGCACCACCCAAGTGTCTTCAATTTCCCGCATAATCCTCTCATCGGGGAGGTCCTTCATCCCATTCCATAATGAGCTTTTTGTCAGGTACCACACTTCCCACTGCTCCTTGCCAATTCTGATTTCTTCAAAGTGATGCAACAACAACAACAGAATCAACCTTGCGCTTCTCCAGACGCCGAGTGTTCGTCGAGGTTCGTTTTTTTGTGAATTTTTTATAAGATGCAACTTTTCTATAGTTGGTGGCGGTGGCTTATTATGTATGCGCATTCTTCAGAGTACGCTTTATAACAGAAAAAGTTCTAGTATCAAGAATTTTTGATATTTCAGCGGTCATGCCAGCGAATCATCTCCCACCACAACCGAGCCAGTGGACCTTTCAGCCACCCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGTACC</site>
                <isoschizomers>
                    <enzyme>Acc65I</enzyme>
                    <enzyme>Asp718I</enzyme>
                    <enzyme>KpnI</enzyme>
                </isoschizomers>
                <canonical_bands>495 304 201</canonical_bands>
                <polymorphic_bands>696 304</polymorphic_bands>
            </assay>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>495 304 201</canonical_bands>
                <polymorphic_bands>696 304</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>302 286 201 186 25</canonical_bands>
                <polymorphic_bands>387 302 286 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCTACCTCTGTCCACTAATCT</pcr_primer_p1>
		<pcr_primer_p2>GGACTACAGGAAATTGAGAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>ATCCTACCTCTGTCCACTAATCTAGGCATCATATTCCCGCATATCTATTGCTCTTAAGTGCCACGTGTATGATGCAATACTATAACTCCTTCGATGACCCCCCCCCCCCTCTCTCTCCCCTTGGTACCTTCTTGACACATGCCTCAAGATTCGCCAAAAGAGCCAAACAATATTACATACAATCCCACCTTAATTAACCTCTCCTTCTCCATATTCTCTCAATTTCCTGTAGTCC</canonical_amplicon>
		<polymorphic_amplicon>ATCCTACCTCTGTCCACTAATCTAGGCATCATATTCCCGCATATCTATTGCTCTTAAGTGCCACGTGTATGATGCAATACTATAACTCCTTCGATGACCCCCCCCCCCCTCTCTCTCCCCTTGGTACMTTCTTGACACATGCCTCAAGATTCGCCAAAAGAGCCAAACAATATTACATACAATCCCACCTTAATTAACCTCTCCTTCTCCATATTCTCTCAATTTCCTGTAGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15214</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>131987</contig_pos>
        <strand>+</strand>
        <context>TGATWTCATT[C/G]AGAGATTCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGAAGATAAGGTGGAAATAATTTTTTTGGAACCGGAACAATGATATCATT</left_flank>
        <right_flank>AGAGATTCTTTTGGAAACAGACTGAACAAAACGAGTGGGACAGTATAGGG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAGAGTACGATGTCTGGTTTTGGGAGACCCTGGTCAGTGACGCGGACCCAGTCTTCCGGGAGACCTGGAAACAGAATTTGAGTTGTGAATATTTATGATATTATTTTCCCTAGTACTTCTAAATGTCAGTCTCTAAGTTCAAAAACTCATACAGGTGTTTTTAAAATGAGTCAGTTGTTTCGTTCTACCTACTCATAAGACTCATTAGTCATTGATTCCAGGTCAGAACCCCATGTGGAATTTTTTATTGACTAGACTTTAAACCATTCCCTCTTTGACGTCTATACCACACCTTTATTGGTTTTTCAAGAACTTTTGAACTTAAATCAAGAATTCCAACATGAACTATTATCAAACTTTTTAGGCAATTTCATTTGAGTCTAACACAGATCTTCTTCTTCCGGACTGTTCTAAATGACATATGGTTTTTTATGTGATGGTGCTGATAGAAGATAAGGTGGAAATAATTTTTTTGGAACCGGAACAATGATATCATTGAGAGATTCTTTTGGAAACAGACTGAACAAAACGAGTGGGACAGTATAGGGAGCCAACAGTTTTCGAACTTCTTGATTTTTTTCCGCTAGCACCATTTTTGATAAGATTCTGATGTTTCAGAACAAATGACCAATAGTAGGGAGCCCACACTGTCAATTTTGAGCTAAATTATCTAGGTTCCTGTGAGATATCAAAAATCTGTTAACTGATAAAAAGTGTGTTGTAATATTAACATCAGTTGACACATTTTCTATATCTTTCACCGGATTCTAATTGAGCTTAAAGTTGAAAGTTTGGGTGTGCTTCAATTAGAGGAAATACGGTAGTTTTAAAACTTCTTATCGGTTTTTCGGCAGCTAGCATTTTTGATACGAATCCGATGTTTTTTATCAGCCTTTGACCTTCTAACTTATTTTTACAGTACCCCAAAACAAATTACTCAAATATTTCGAATCTCATCTACTTTGCGATTCGAAGTCAGTGAGTCTCTAAGTGCACAA</canonical>
            <polymorphic>AGAAGAGTACGATGTCTGGTTTTGGGAGACCCTGGTCAGTGACGCGGACCCAGTCTTCCGGGAGACCTGGAAACAGAATTTGAGTTGTGAATATTTATGATATTATTTTCCCTAGTACTTCTAAATGTCAGTCTCTAAGTTCAAAAACTCATACAGGTGTTTTTAAAATGAGTCAGTTGTTTCGTTCTACCTACTCATAAGACTCATTAGTCATTGATTCCAGGTCAGAACCCCATGTGGAATTTTTTATTGACTAGACTTTAAACCATTCCCTCTTTGACGTCTATACCACACCTTTATTGGTTTTTCAAGAACTTTTGAACTTAAATCAAGAATTCCAACATGAACTATTATCAAACTTTTTAGGCAATTTCATTTGAGTCTAACACAGATCTTCTTCTTCCGGACTGTTCTAAATGACATATGGTTTTTTATGTGATGGTGCTGATAGAAGATAAGGTGGAAATAATTTTTTTGGAACCGGAACAATGATATCATTSAGAGATTCTTTTGGAAACAGACTGAACAAAACGAGTGGGACAGTATAGGGAGCCAACAGTTTTCGAACTTCTTGATTTTTTTCCGCTAGCACCATTTTTGATAAGATTCTGATGTTTCAGAACAAATGACCAATAGTAGGGAGCCCACACTGTCAATTTTGAGCTAAATTATCTAGGTTCCTGTGAGATATCAAAAATCTGTTAACTGATAAAAAGTGTGTTGTAATATTAACATCAGTTGACACATTTTCTATATCTTTCACCGGATTCTAATTGAGCTTAAAGTTGAAAGTTTGGGTGTGCTTCAATTAGAGGAAATACGGTAGTTTTAAAACTTCTTATCGGTTTTTCGGCAGCTAGCATTTTTGATACGAATCCGATGTTTTTTATCAGCCTTTGACCTTCTAACTTATTTTTACAGTACCCCAAAACAAATTACTCAAATATTTCGAATCTCATCTACTTTGCGATTCGAAGTCAGTGAGTCTCTAAGTGCACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAGAATTCCAACATGAACTAT</pcr_primer_p1>
		<pcr_primer_p2>AAATCAAGAAGTTCGAAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAAGAATTCCAACATGAACTATTATCAAACTTTTTAGGCAATTTCATTTGAGTCTAACACAGATCTTCTTCTTCCGGACTGTTCTAAATGACATATGGTTTTTTATGTGATGGTGCTGATAGAAGATAAGGTGGAAATAATTTTTTTGGAACCGGAACAATGATATCATTGAGAGATTCTTTTGGAAACAGACTGAACAAAACGAGTGGGACAGTATAGGGAGCCAACAGTTTTCGAACTTCTTGATTT</canonical_amplicon>
		<polymorphic_amplicon>TCAAGAATTCCAACATGAACTATTATCAAACTTTTTAGGCAATTTCATTTGAGTCTAACACAGATCTTCTTCTTCCGGACTGTTCTAAATGACATATGGTTTTTTATGTGATGGTGCTGATAGAAGATAAGGTGGAAATAATTTTTTTGGAACCGGAACAATGATATCATTSAGAGATTCTTTTGGAAACAGACTGAACAAAACGAGTGGGACAGTATAGGGAGCCAACAGTTTTCGAACTTCTTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15215</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>131981</contig_pos>
        <strand>+</strand>
        <context>GAACAATGAT[A/T]TCATTSAGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTGATAGAAGATAAGGTGGAAATAATTTTTTTGGAACCGGAACAATGAT</left_flank>
        <right_flank>TCATTGAGAGATTCTTTTGGAAACAGACTGAACAAAACGAGTGGGACAGT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTGGAAGAAGAGTACGATGTCTGGTTTTGGGAGACCCTGGTCAGTGACGCGGACCCAGTCTTCCGGGAGACCTGGAAACAGAATTTGAGTTGTGAATATTTATGATATTATTTTCCCTAGTACTTCTAAATGTCAGTCTCTAAGTTCAAAAACTCATACAGGTGTTTTTAAAATGAGTCAGTTGTTTCGTTCTACCTACTCATAAGACTCATTAGTCATTGATTCCAGGTCAGAACCCCATGTGGAATTTTTTATTGACTAGACTTTAAACCATTCCCTCTTTGACGTCTATACCACACCTTTATTGGTTTTTCAAGAACTTTTGAACTTAAATCAAGAATTCCAACATGAACTATTATCAAACTTTTTAGGCAATTTCATTTGAGTCTAACACAGATCTTCTTCTTCCGGACTGTTCTAAATGACATATGGTTTTTTATGTGATGGTGCTGATAGAAGATAAGGTGGAAATAATTTTTTTGGAACCGGAACAATGATATCATTGAGAGATTCTTTTGGAAACAGACTGAACAAAACGAGTGGGACAGTATAGGGAGCCAACAGTTTTCGAACTTCTTGATTTTTTTCCGCTAGCACCATTTTTGATAAGATTCTGATGTTTCAGAACAAATGACCAATAGTAGGGAGCCCACACTGTCAATTTTGAGCTAAATTATCTAGGTTCCTGTGAGATATCAAAAATCTGTTAACTGATAAAAAGTGTGTTGTAATATTAACATCAGTTGACACATTTTCTATATCTTTCACCGGATTCTAATTGAGCTTAAAGTTGAAAGTTTGGGTGTGCTTCAATTAGAGGAAATACGGTAGTTTTAAAACTTCTTATCGGTTTTTCGGCAGCTAGCATTTTTGATACGAATCCGATGTTTTTTATCAGCCTTTGACCTTCTAACTTATTTTTACAGTACCCCAAAACAAATTACTCAAATATTTCGAATCTCATCTACTTTGCGATTCGAAGTCAGTGAGTCTCTAAGT</canonical>
            <polymorphic>CTTGGAAGAAGAGTACGATGTCTGGTTTTGGGAGACCCTGGTCAGTGACGCGGACCCAGTCTTCCGGGAGACCTGGAAACAGAATTTGAGTTGTGAATATTTATGATATTATTTTCCCTAGTACTTCTAAATGTCAGTCTCTAAGTTCAAAAACTCATACAGGTGTTTTTAAAATGAGTCAGTTGTTTCGTTCTACCTACTCATAAGACTCATTAGTCATTGATTCCAGGTCAGAACCCCATGTGGAATTTTTTATTGACTAGACTTTAAACCATTCCCTCTTTGACGTCTATACCACACCTTTATTGGTTTTTCAAGAACTTTTGAACTTAAATCAAGAATTCCAACATGAACTATTATCAAACTTTTTAGGCAATTTCATTTGAGTCTAACACAGATCTTCTTCTTCCGGACTGTTCTAAATGACATATGGTTTTTTATGTGATGGTGCTGATAGAAGATAAGGTGGAAATAATTTTTTTGGAACCGGAACAATGATWTCATTGAGAGATTCTTTTGGAAACAGACTGAACAAAACGAGTGGGACAGTATAGGGAGCCAACAGTTTTCGAACTTCTTGATTTTTTTCCGCTAGCACCATTTTTGATAAGATTCTGATGTTTCAGAACAAATGACCAATAGTAGGGAGCCCACACTGTCAATTTTGAGCTAAATTATCTAGGTTCCTGTGAGATATCAAAAATCTGTTAACTGATAAAAAGTGTGTTGTAATATTAACATCAGTTGACACATTTTCTATATCTTTCACCGGATTCTAATTGAGCTTAAAGTTGAAAGTTTGGGTGTGCTTCAATTAGAGGAAATACGGTAGTTTTAAAACTTCTTATCGGTTTTTCGGCAGCTAGCATTTTTGATACGAATCCGATGTTTTTTATCAGCCTTTGACCTTCTAACTTATTTTTACAGTACCCCAAAACAAATTACTCAAATATTTCGAATCTCATCTACTTTGCGATTCGAAGTCAGTGAGTCTCTAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>499 305 196</canonical_bands>
                <polymorphic_bands>695 305</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAGAATTCCAACATGAACTAT</pcr_primer_p1>
		<pcr_primer_p2>AAATCAAGAAGTTCGAAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAAGAATTCCAACATGAACTATTATCAAACTTTTTAGGCAATTTCATTTGAGTCTAACACAGATCTTCTTCTTCCGGACTGTTCTAAATGACATATGGTTTTTTATGTGATGGTGCTGATAGAAGATAAGGTGGAAATAATTTTTTTGGAACCGGAACAATGATATCATTGAGAGATTCTTTTGGAAACAGACTGAACAAAACGAGTGGGACAGTATAGGGAGCCAACAGTTTTCGAACTTCTTGATTT</canonical_amplicon>
		<polymorphic_amplicon>TCAAGAATTCCAACATGAACTATTATCAAACTTTTTAGGCAATTTCATTTGAGTCTAACACAGATCTTCTTCTTCCGGACTGTTCTAAATGACATATGGTTTTTTATGTGATGGTGCTGATAGAAGATAAGGTGGAAATAATTTTTTTGGAACCGGAACAATGATWTCATTGAGAGATTCTTTTGGAAACAGACTGAACAAAACGAGTGGGACAGTATAGGGAGCCAACAGTTTTCGAACTTCTTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15216</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>131921</contig_pos>
        <strand>+</strand>
        <context>ATGGTTTTTT[A/T]TGTGATGGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAACACAGATCTTCTTCTTCCGGACTGTTCTAAATGACATATGGTTTTTT</left_flank>
        <right_flank>TGTGATGGTGCTGATAGAAGATAAGGTGGAAATAATTTTTTTGGAACCGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGCCGTTTCGAGACGTTCGTTTCCGAATCCGCCACGTGATGCTGCTACTTCAGGAGACACTTGGAAGAAGAGTACGATGTCTGGTTTTGGGAGACCCTGGTCAGTGACGCGGACCCAGTCTTCCGGGAGACCTGGAAACAGAATTTGAGTTGTGAATATTTATGATATTATTTTCCCTAGTACTTCTAAATGTCAGTCTCTAAGTTCAAAAACTCATACAGGTGTTTTTAAAATGAGTCAGTTGTTTCGTTCTACCTACTCATAAGACTCATTAGTCATTGATTCCAGGTCAGAACCCCATGTGGAATTTTTTATTGACTAGACTTTAAACCATTCCCTCTTTGACGTCTATACCACACCTTTATTGGTTTTTCAAGAACTTTTGAACTTAAATCAAGAATTCCAACATGAACTATTATCAAACTTTTTAGGCAATTTCATTTGAGTCTAACACAGATCTTCTTCTTCCGGACTGTTCTAAATGACATATGGTTTTTTATGTGATGGTGCTGATAGAAGATAAGGTGGAAATAATTTTTTTGGAACCGGAACAATGATATCATTGAGAGATTCTTTTGGAAACAGACTGAACAAAACGAGTGGGACAGTATAGGGAGCCAACAGTTTTCGAACTTCTTGATTTTTTTCCGCTAGCACCATTTTTGATAAGATTCTGATGTTTCAGAACAAATGACCAATAGTAGGGAGCCCACACTGTCAATTTTGAGCTAAATTATCTAGGTTCCTGTGAGATATCAAAAATCTGTTAACTGATAAAAAGTGTGTTGTAATATTAACATCAGTTGACACATTTTCTATATCTTTCACCGGATTCTAATTGAGCTTAAAGTTGAAAGTTTGGGTGTGCTTCAATTAGAGGAAATACGGTAGTTTTAAAACTTCTTATCGGTTTTTCGGCAGCTAGCATTTTTGATACGAATCCGATGTTTTTTATCAGCCTTTGACCTTCTAACTTATTTTTACAGTACCCCAAAACAA</canonical>
            <polymorphic>GTGCCGTTTCGAGACGTTCGTTTCCGAATCCGCCACGTGATGCTGCTACTTCAGGAGACACTTGGAAGAAGAGTACGATGTCTGGTTTTGGGAGACCCTGGTCAGTGACGCGGACCCAGTCTTCCGGGAGACCTGGAAACAGAATTTGAGTTGTGAATATTTATGATATTATTTTCCCTAGTACTTCTAAATGTCAGTCTCTAAGTTCAAAAACTCATACAGGTGTTTTTAAAATGAGTCAGTTGTTTCGTTCTACCTACTCATAAGACTCATTAGTCATTGATTCCAGGTCAGAACCCCATGTGGAATTTTTTATTGACTAGACTTTAAACCATTCCCTCTTTGACGTCTATACCACACCTTTATTGGTTTTTCAAGAACTTTTGAACTTAAATCAAGAATTCCAACATGAACTATTATCAAACTTTTTAGGCAATTTCATTTGAGTCTAACACAGATCTTCTTCTTCCGGACTGTTCTAAATGACATATGGTTTTTTWTGTGATGGTGCTGATAGAAGATAAGGTGGAAATAATTTTTTTGGAACCGGAACAATGATATCATTGAGAGATTCTTTTGGAAACAGACTGAACAAAACGAGTGGGACAGTATAGGGAGCCAACAGTTTTCGAACTTCTTGATTTTTTTCCGCTAGCACCATTTTTGATAAGATTCTGATGTTTCAGAACAAATGACCAATAGTAGGGAGCCCACACTGTCAATTTTGAGCTAAATTATCTAGGTTCCTGTGAGATATCAAAAATCTGTTAACTGATAAAAAGTGTGTTGTAATATTAACATCAGTTGACACATTTTCTATATCTTTCACCGGATTCTAATTGAGCTTAAAGTTGAAAGTTTGGGTGTGCTTCAATTAGAGGAAATACGGTAGTTTTAAAACTTCTTATCGGTTTTTCGGCAGCTAGCATTTTTGATACGAATCCGATGTTTTTTATCAGCCTTTGACCTTCTAACTTATTTTTACAGTACCCCAAAACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAGAATTCCAACATGAACTAT</pcr_primer_p1>
		<pcr_primer_p2>AAATCAAGAAGTTCGAAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAAGAATTCCAACATGAACTATTATCAAACTTTTTAGGCAATTTCATTTGAGTCTAACACAGATCTTCTTCTTCCGGACTGTTCTAAATGACATATGGTTTTTTATGTGATGGTGCTGATAGAAGATAAGGTGGAAATAATTTTTTTGGAACCGGAACAATGATATCATTGAGAGATTCTTTTGGAAACAGACTGAACAAAACGAGTGGGACAGTATAGGGAGCCAACAGTTTTCGAACTTCTTGATTT</canonical_amplicon>
		<polymorphic_amplicon>TCAAGAATTCCAACATGAACTATTATCAAACTTTTTAGGCAATTTCATTTGAGTCTAACACAGATCTTCTTCTTCCGGACTGTTCTAAATGACATATGGTTTTTTWTGTGATGGTGCTGATAGAAGATAAGGTGGAAATAATTTTTTTGGAACCGGAACAATGATATCATTGAGAGATTCTTTTGGAAACAGACTGAACAAAACGAGTGGGACAGTATAGGGAGCCAACAGTTTTCGAACTTCTTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15217</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>131846</contig_pos>
        <strand>+</strand>
        <context>TATTATCAAA[C/G]TTTTTAGGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAAGAACTTTTGAACTTAAATCAAGAATTCCAACATGAACTATTATCAAA</left_flank>
        <right_flank>TTTTTAGGCAATTTCATTTGAGTCTAACACAGATCTTCTTCTTCCGGACT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCAGCGTTGACCGATTTCCAGAAGGCGTCATCGCGAAGTGTTGGCATCACCTTTGCCACCTCCGCTTGCAATTGTGCCGTTTCGAGACGTTCGTTTCCGAATCCGCCACGTGATGCTGCTACTTCAGGAGACACTTGGAAGAAGAGTACGATGTCTGGTTTTGGGAGACCCTGGTCAGTGACGCGGACCCAGTCTTCCGGGAGACCTGGAAACAGAATTTGAGTTGTGAATATTTATGATATTATTTTCCCTAGTACTTCTAAATGTCAGTCTCTAAGTTCAAAAACTCATACAGGTGTTTTTAAAATGAGTCAGTTGTTTCGTTCTACCTACTCATAAGACTCATTAGTCATTGATTCCAGGTCAGAACCCCATGTGGAATTTTTTATTGACTAGACTTTAAACCATTCCCTCTTTGACGTCTATACCACACCTTTATTGGTTTTTCAAGAACTTTTGAACTTAAATCAAGAATTCCAACATGAACTATTATCAAACTTTTTAGGCAATTTCATTTGAGTCTAACACAGATCTTCTTCTTCCGGACTGTTCTAAATGACATATGGTTTTTTATGTGATGGTGCTGATAGAAGATAAGGTGGAAATAATTTTTTTGGAACCGGAACAATGATATCATTGAGAGATTCTTTTGGAAACAGACTGAACAAAACGAGTGGGACAGTATAGGGAGCCAACAGTTTTCGAACTTCTTGATTTTTTTCCGCTAGCACCATTTTTGATAAGATTCTGATGTTTCAGAACAAATGACCAATAGTAGGGAGCCCACACTGTCAATTTTGAGCTAAATTATCTAGGTTCCTGTGAGATATCAAAAATCTGTTAACTGATAAAAAGTGTGTTGTAATATTAACATCAGTTGACACATTTTCTATATCTTTCACCGGATTCTAATTGAGCTTAAAGTTGAAAGTTTGGGTGTGCTTCAATTAGAGGAAATACGGTAGTTTTAAAACTTCTTATCGGTTTTTCGGCAGCTA</canonical>
            <polymorphic>CATCAGCGTTGACCGATTTCCAGAAGGCGTCATCGCGAAGTGTTGGCATCACCTTTGCCACCTCCGCTTGCAATTGTGCCGTTTCGAGACGTTCGTTTCCGAATCCGCCACGTGATGCTGCTACTTCAGGAGACACTTGGAAGAAGAGTACGATGTCTGGTTTTGGGAGACCCTGGTCAGTGACGCGGACCCAGTCTTCCGGGAGACCTGGAAACAGAATTTGAGTTGTGAATATTTATGATATTATTTTCCCTAGTACTTCTAAATGTCAGTCTCTAAGTTCAAAAACTCATACAGGTGTTTTTAAAATGAGTCAGTTGTTTCGTTCTACCTACTCATAAGACTCATTAGTCATTGATTCCAGGTCAGAACCCCATGTGGAATTTTTTATTGACTAGACTTTAAACCATTCCCTCTTTGACGTCTATACCACACCTTTATTGGTTTTTCAAGAACTTTTGAACTTAAATCAAGAATTCCAACATGAACTATTATCAAASTTTTTAGGCAATTTCATTTGAGTCTAACACAGATCTTCTTCTTCCGGACTGTTCTAAATGACATATGGTTTTTTATGTGATGGTGCTGATAGAAGATAAGGTGGAAATAATTTTTTTGGAACCGGAACAATGATATCATTGAGAGATTCTTTTGGAAACAGACTGAACAAAACGAGTGGGACAGTATAGGGAGCCAACAGTTTTCGAACTTCTTGATTTTTTTCCGCTAGCACCATTTTTGATAAGATTCTGATGTTTCAGAACAAATGACCAATAGTAGGGAGCCCACACTGTCAATTTTGAGCTAAATTATCTAGGTTCCTGTGAGATATCAAAAATCTGTTAACTGATAAAAAGTGTGTTGTAATATTAACATCAGTTGACACATTTTCTATATCTTTCACCGGATTCTAATTGAGCTTAAAGTTGAAAGTTTGGGTGTGCTTCAATTAGAGGAAATACGGTAGTTTTAAAACTTCTTATCGGTTTTTCGGCAGCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACCACACCTTTATTGGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTCGTTTTGTTCAGTCTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATACCACACCTTTATTGGTTTTTCAAGAACTTTTGAACTTAAATCAAGAATTCCAACATGAACTATTATCAAACTTTTTAGGCAATTTCATTTGAGTCTAACACAGATCTTCTTCTTCCGGACTGTTCTAAATGACATATGGTTTTTTATGTGATGGTGCTGATAGAAGATAAGGTGGAAATAATTTTTTTGGAACCGGAACAATGATATCATTGAGAGATTCTTTTGGAAACAGACTGAACAAAACGAGT</canonical_amplicon>
		<polymorphic_amplicon>ATACCACACCTTTATTGGTTTTTCAAGAACTTTTGAACTTAAATCAAGAATTCCAACATGAACTATTATCAAASTTTTTAGGCAATTTCATTTGAGTCTAACACAGATCTTCTTCTTCCGGACTGTTCTAAATGACATATGGTTTTTTATGTGATGGTGCTGATAGAAGATAAGGTGGAAATAATTTTTTTGGAACCGGAACAATGATATCATTGAGAGATTCTTTTGGAAACAGACTGAACAAAACGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15218</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>218078</contig_pos>
        <strand>+</strand>
        <context>AAGGGGAAAA[C/T]CTTCTTACGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAAGAAGCTTAGGCTGGAAAATGAGAATGGTGTACTAAAAGGGGAAAA</left_flank>
        <right_flank>CTTCTTACGTAGTTCGTCTCCTGATTTTTCGGATCACTGAATACAATTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACAATAACAGAAAACCAAGAACAAAAATAAAAAATAGGTGCCTGATGGGGTGCTGATCTAATAGAGAAAAAGGTTTAATAAAAAACTATACCTGTCAAATCTCAAATATCTAATTTTGTATAGTTGCGCTAAAATAGAAGATATAGAGCTTGAAAAGCTTGAAAACAGGTGCAAAAATCCAAGGAAATTAAAAATTAAAAGAAAAAAGATTACTAGAAAAGTCTATTTCCGGGTTTCACACCCGGAATACCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATACGTACACTTTTCGTCACCTCCAAACAACACAACGCCATGTTTGTTCAATTTGAATTTAAGCAAATATTTTTGCGATTCTTCTGGTTAAACAGCACGGGCGGGCAAAAGGCCAGAACGACTCTTTGTTCCATCATGGATCTCAAGAACCGGAAAATTCAAGAAGCTTAGGCTGGAAAATGAGAATGGTGTACTAAAAGGGGAAAATCTTCTTACGTAGTTCGTCTCCTGATTTTTCGGATCACTGAATACAATTTTTAAGATTTGCGTATGTCAAAAAAGTCCGCACAAATATGTGGGTGGGGGATAATAATAAGAAAATTATCACATGTATCTTGTGATGTAACATTCAAGAAGGCATAAGAAGGAGGATTCCAGAAATGAATAACAAAAACCTCTAAATTTTGTCAAGAGTCCGAAAGTGGGATTACCGTACTTCCTCGAATAGAAGCCCACCAAAACCGTCCACTTTAAGCCGATATATCTCGTTTCATGTAAGAGATGTCGAAAAGTTGTCAACTGACAAAACGTTTATCATAATATCATGAATATTTTGCTAGTTGATCACTTTTTCATATTTCTAACAGGAATCGAGATAAATCAAATCAAAGTAGAGTTTGGATGGCGTTCTATTAGAGCGTCTACAGTAATTTTAAATTGTTAGAAATTAATGAACAAAAGTGGAGCTTAATTTAGTATGTATTAAGT</canonical>
            <polymorphic>TCACAATAACAGAAAACCAAGAACAAAAATAAAAAATAGGTGCCTGATGGGGTGCTGATCTAATAGAGAAAAAGGTTTAATAAAAAACTATACCTGTCAAATCTCAAATATCTAATTTTGTATAGTTGCGCTAAAATAGAAGATATAGAGCTTGAAAAGCTTGAAAACAGGTGCAAAAATCCAAGGAAATTAAAAATTAAAAGAAAAAAGATTACTAGAAAAGTCTATTTCCGGGTTTCACACCCGGAATACCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATACGTACACTTTTCGTCACCTCCAAACAACACAACGCCATGTTTGTTCAATTTGAATTTAAGCAAATATTTTTGCGATTCTTCTGGTTAAACAGCACGGGCGGGCAAAAGGCCAGAACGACTCTTTGTTCCATCATGGATCTCAAGAACCGGAAAATTCAAGAAGCTTAGGCTGGAAAATGAGAATGGTGTACTAAAAGGGGAAAAYCTTCTTACGTAGTTCGTCTCCTGATTTTTCGGATCACTGAATACAATTTTTAAGATTTGCGTATGTCAAAAAAGTCCGCACAAATATGTGGGTGGGGGATAATAATAAGAAAATTATCACATGTATCTTGTGATGTAACATTCAAGAAGGCATAAGAAGGAGGATTCCAGAAATGAATAACAAAAACCTCTAAATTTTGTCAAGAGTCCGAAAGTGGGATTACCGTACTTCCTCGAATAGAAGCCCACCAAAACCGTCCACTTTAAGCCGATATATCTCGTTTCATGTAAGAGATGTCGAAAAGTTGTCAACTGACAAAACGTTTATCATAATATCATGAATATTTTGCTAGTTGATCACTTTTTCATATTTCTAACAGGAATCGAGATAAATCAAATCAAAGTAGAGTTTGGATGGCGTTCTATTAGAGCGTCTACAGTAATTTTAAATTGTTAGAAATTAATGAACAAAAGTGGAGCTTAATTTAGTATGTATTAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACGACTCTTTGTTCCATCAT</pcr_primer_p1>
		<pcr_primer_p2>TCTTATGCCTTCTTGAATGTTAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACGACTCTTTGTTCCATCATGGATCTCAAGAACCGGAAAATTCAAGAAGCTTAGGCTGGAAAATGAGAATGGTGTACTAAAAGGGGAAAATCTTCTTACGTAGTTCGTCTCCTGATTTTTCGGATCACTGAATACAATTTTTAAGATTTGCGTATGTCAAAAAAGTCCGCACAAATATGTGGGTGGGGGATAATAATAAGAAAATTATCACATGTATCTTGTGATGTAACATTCAAGAAGGCATAAGA</canonical_amplicon>
		<polymorphic_amplicon>AACGACTCTTTGTTCCATCATGGATCTCAAGAACCGGAAAATTCAAGAAGCTTAGGCTGGAAAATGAGAATGGTGTACTAAAAGGGGAAAAYCTTCTTACGTAGTTCGTCTCCTGATTTTTCGGATCACTGAATACAATTTTTAAGATTTGCGTATGTCAAAAAAGTCCGCACAAATATGTGGGTGGGGGATAATAATAAGAAAATTATCACATGTATCTTGTGATGTAACATTCAAGAAGGCATAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15219</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>218022</contig_pos>
        <strand>+</strand>
        <context>YTCAAGAACC[A/G]GAAAATTCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGGCAAAAGGCCAGAACGACTCTTTGTTCCATCATGGATCTCAAGAACC</left_flank>
        <right_flank>GAAAATTCAAGAAGCTTAGGCTGGAAAATGAGAATGGTGTACTAAAAGGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAATTTTCAATGTGATCGAAAACTTGACAGCCGAGCTTCAGGCTTATGAAAATGTTCACAATAACAGAAAACCAAGAACAAAAATAAAAAATAGGTGCCTGATGGGGTGCTGATCTAATAGAGAAAAAGGTTTAATAAAAAACTATACCTGTCAAATCTCAAATATCTAATTTTGTATAGTTGCGCTAAAATAGAAGATATAGAGCTTGAAAAGCTTGAAAACAGGTGCAAAAATCCAAGGAAATTAAAAATTAAAAGAAAAAAGATTACTAGAAAAGTCTATTTCCGGGTTTCACACCCGGAATACCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATACGTACACTTTTCGTCACCTCCAAACAACACAACGCCATGTTTGTTCAATTTGAATTTAAGCAAATATTTTTGCGATTCTTCTGGTTAAACAGCACGGGCGGGCAAAAGGCCAGAACGACTCTTTGTTCCATCATGGATCTCAAGAACCGGAAAATTCAAGAAGCTTAGGCTGGAAAATGAGAATGGTGTACTAAAAGGGGAAAATCTTCTTACGTAGTTCGTCTCCTGATTTTTCGGATCACTGAATACAATTTTTAAGATTTGCGTATGTCAAAAAAGTCCGCACAAATATGTGGGTGGGGGATAATAATAAGAAAATTATCACATGTATCTTGTGATGTAACATTCAAGAAGGCATAAGAAGGAGGATTCCAGAAATGAATAACAAAAACCTCTAAATTTTGTCAAGAGTCCGAAAGTGGGATTACCGTACTTCCTCGAATAGAAGCCCACCAAAACCGTCCACTTTAAGCCGATATATCTCGTTTCATGTAAGAGATGTCGAAAAGTTGTCAACTGACAAAACGTTTATCATAATATCATGAATATTTTGCTAGTTGATCACTTTTTCATATTTCTAACAGGAATCGAGATAAATCAAATCAAAGTAGAGTTTGGATGGCGTTCTATTAGAGCGTCTACAGTAATT</canonical>
            <polymorphic>ATAATTTTCAATGTGATCGAAAACTTGACAGCCGAGCTTCAGGCTTATGAAAATGTTCACAATAACAGAAAACCAAGAACAAAAATAAAAAATAGGTGCCTGATGGGGTGCTGATCTAATAGAGAAAAAGGTTTAATAAAAAACTATACCTGTCAAATCTCAAATATCTAATTTTGTATAGTTGCGCTAAAATAGAAGATATAGAGCTTGAAAAGCTTGAAAACAGGTGCAAAAATCCAAGGAAATTAAAAATTAAAAGAAAAAAGATTACTAGAAAAGTCTATTTCCGGGTTTCACACCCGGAATACCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATACGTACACTTTTCGTCACCTCCAAACAACACAACGCCATGTTTGTTCAATTTGAATTTAAGCAAATATTTTTGCGATTCTTCTGGTTAAACAGCACGGGCGGGCAAAAGGCCAGAACGACTCTTTGTTCCATCATGGATCTCAAGAACCRGAAAATTCAAGAAGCTTAGGCTGGAAAATGAGAATGGTGTACTAAAAGGGGAAAATCTTCTTACGTAGTTCGTCTCCTGATTTTTCGGATCACTGAATACAATTTTTAAGATTTGCGTATGTCAAAAAAGTCCGCACAAATATGTGGGTGGGGGATAATAATAAGAAAATTATCACATGTATCTTGTGATGTAACATTCAAGAAGGCATAAGAAGGAGGATTCCAGAAATGAATAACAAAAACCTCTAAATTTTGTCAAGAGTCCGAAAGTGGGATTACCGTACTTCCTCGAATAGAAGCCCACCAAAACCGTCCACTTTAAGCCGATATATCTCGTTTCATGTAAGAGATGTCGAAAAGTTGTCAACTGACAAAACGTTTATCATAATATCATGAATATTTTGCTAGTTGATCACTTTTTCATATTTCTAACAGGAATCGAGATAAATCAAATCAAAGTAGAGTTTGGATGGCGTTCTATTAGAGCGTCTACAGTAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 287 198 13</canonical_bands>
                <polymorphic_bands>700 287 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTTTTCGCGTTCTCTAATAC</pcr_primer_p1>
		<pcr_primer_p2>CAGGAGACGAACTACGTAAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACTTTTCGCGTTCTCTAATACGTACACTTTTCGTCACCTCCAAACAACACAACGCCATGTTTGTTCAATTTGAATTTAAGCAAATATTTTTGCGATTCTTCTGGTTAAACAGCACGGGCGGGCAAAAGGCCAGAACGACTCTTTGTTCCATCATGGATCTCAAGAACCGGAAAATTCAAGAAGCTTAGGCTGGAAAATGAGAATGGTGTACTAAAAGGGGAAAATCTTCTTACGTAGTTCGTCTCCTG</canonical_amplicon>
		<polymorphic_amplicon>AAACTTTTCGCGTTCTCTAATACGTACACTTTTCGTCACCTCCAAACAACACAACGCCATGTTTGTTCAATTTGAATTTAAGCAAATATTTTTGCGATTCTTCTGGTTAAACAGCACGGGCGGGCAAAAGGCCAGAACGACTCTTTGTTCCATCATGGATCTCAAGAACCRGAAAATTCAAGAAGCTTAGGCTGGAAAATGAGAATGGTGTACTAAAAGGGGAAAATCTTCTTACGTAGTTCGTCTCCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15220</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>218012</contig_pos>
        <strand>+</strand>
        <context>CATCATGGAT[C/T]TCAAGAACCR</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAGCACGGGCGGGCAAAAGGCCAGAACGACTCTTTGTTCCATCATGGAT</left_flank>
        <right_flank>TCAAGAACCGGAAAATTCAAGAAGCTTAGGCTGGAAAATGAGAATGGTGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATACCCTCCATAATTTTCAATGTGATCGAAAACTTGACAGCCGAGCTTCAGGCTTATGAAAATGTTCACAATAACAGAAAACCAAGAACAAAAATAAAAAATAGGTGCCTGATGGGGTGCTGATCTAATAGAGAAAAAGGTTTAATAAAAAACTATACCTGTCAAATCTCAAATATCTAATTTTGTATAGTTGCGCTAAAATAGAAGATATAGAGCTTGAAAAGCTTGAAAACAGGTGCAAAAATCCAAGGAAATTAAAAATTAAAAGAAAAAAGATTACTAGAAAAGTCTATTTCCGGGTTTCACACCCGGAATACCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATACGTACACTTTTCGTCACCTCCAAACAACACAACGCCATGTTTGTTCAATTTGAATTTAAGCAAATATTTTTGCGATTCTTCTGGTTAAACAGCACGGGCGGGCAAAAGGCCAGAACGACTCTTTGTTCCATCATGGATCTCAAGAACCGGAAAATTCAAGAAGCTTAGGCTGGAAAATGAGAATGGTGTACTAAAAGGGGAAAATCTTCTTACGTAGTTCGTCTCCTGATTTTTCGGATCACTGAATACAATTTTTAAGATTTGCGTATGTCAAAAAAGTCCGCACAAATATGTGGGTGGGGGATAATAATAAGAAAATTATCACATGTATCTTGTGATGTAACATTCAAGAAGGCATAAGAAGGAGGATTCCAGAAATGAATAACAAAAACCTCTAAATTTTGTCAAGAGTCCGAAAGTGGGATTACCGTACTTCCTCGAATAGAAGCCCACCAAAACCGTCCACTTTAAGCCGATATATCTCGTTTCATGTAAGAGATGTCGAAAAGTTGTCAACTGACAAAACGTTTATCATAATATCATGAATATTTTGCTAGTTGATCACTTTTTCATATTTCTAACAGGAATCGAGATAAATCAAATCAAAGTAGAGTTTGGATGGCGTTCTATTAGAGCGTC</canonical>
            <polymorphic>TATACCCTCCATAATTTTCAATGTGATCGAAAACTTGACAGCCGAGCTTCAGGCTTATGAAAATGTTCACAATAACAGAAAACCAAGAACAAAAATAAAAAATAGGTGCCTGATGGGGTGCTGATCTAATAGAGAAAAAGGTTTAATAAAAAACTATACCTGTCAAATCTCAAATATCTAATTTTGTATAGTTGCGCTAAAATAGAAGATATAGAGCTTGAAAAGCTTGAAAACAGGTGCAAAAATCCAAGGAAATTAAAAATTAAAAGAAAAAAGATTACTAGAAAAGTCTATTTCCGGGTTTCACACCCGGAATACCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATACGTACACTTTTCGTCACCTCCAAACAACACAACGCCATGTTTGTTCAATTTGAATTTAAGCAAATATTTTTGCGATTCTTCTGGTTAAACAGCACGGGCGGGCAAAAGGCCAGAACGACTCTTTGTTCCATCATGGATYTCAAGAACCGGAAAATTCAAGAAGCTTAGGCTGGAAAATGAGAATGGTGTACTAAAAGGGGAAAATCTTCTTACGTAGTTCGTCTCCTGATTTTTCGGATCACTGAATACAATTTTTAAGATTTGCGTATGTCAAAAAAGTCCGCACAAATATGTGGGTGGGGGATAATAATAAGAAAATTATCACATGTATCTTGTGATGTAACATTCAAGAAGGCATAAGAAGGAGGATTCCAGAAATGAATAACAAAAACCTCTAAATTTTGTCAAGAGTCCGAAAGTGGGATTACCGTACTTCCTCGAATAGAAGCCCACCAAAACCGTCCACTTTAAGCCGATATATCTCGTTTCATGTAAGAGATGTCGAAAAGTTGTCAACTGACAAAACGTTTATCATAATATCATGAATATTTTGCTAGTTGATCACTTTTTCATATTTCTAACAGGAATCGAGATAAATCAAATCAAAGTAGAGTTTGGATGGCGTTCTATTAGAGCGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>374 323 101 98 80 24</canonical_bands>
                <polymorphic_bands>475 323 98 80 24</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATACCAGCAAATTTTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTAGTACACCATTCTCATT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAATACCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATACGTACACTTTTCGTCACCTCCAAACAACACAACGCCATGTTTGTTCAATTTGAATTTAAGCAAATATTTTTGCGATTCTTCTGGTTAAACAGCACGGGCGGGCAAAAGGCCAGAACGACTCTTTGTTCCATCATGGATCTCAAGAACCGGAAAATTCAAGAAGCTTAGGCTGGAAAATGAGAATGGTGTACTAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>GAATACCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATACGTACACTTTTCGTCACCTCCAAACAACACAACGCCATGTTTGTTCAATTTGAATTTAAGCAAATATTTTTGCGATTCTTCTGGTTAAACAGCACGGGCGGGCAAAAGGCCAGAACGACTCTTTGTTCCATCATGGATYTCAAGAACCGGAAAATTCAAGAAGCTTAGGCTGGAAAATGAGAATGGTGTACTAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15221</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>217982</contig_pos>
        <strand>+</strand>
        <context>CGGGCAAAAG[A/G]CCAGAACGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCAAATATTTTTGCGATTCTTCTGGTTAAACAGCACGGGCGGGCAAAAG</left_flank>
        <right_flank>CCAGAACGACTCTTTGTTCCATCATGGATCTCAAGAACCGGAAAATTCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATGCAAAGTTTTCAATCTAGGTATGTTTTATACCCTCCATAATTTTCAATGTGATCGAAAACTTGACAGCCGAGCTTCAGGCTTATGAAAATGTTCACAATAACAGAAAACCAAGAACAAAAATAAAAAATAGGTGCCTGATGGGGTGCTGATCTAATAGAGAAAAAGGTTTAATAAAAAACTATACCTGTCAAATCTCAAATATCTAATTTTGTATAGTTGCGCTAAAATAGAAGATATAGAGCTTGAAAAGCTTGAAAACAGGTGCAAAAATCCAAGGAAATTAAAAATTAAAAGAAAAAAGATTACTAGAAAAGTCTATTTCCGGGTTTCACACCCGGAATACCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATACGTACACTTTTCGTCACCTCCAAACAACACAACGCCATGTTTGTTCAATTTGAATTTAAGCAAATATTTTTGCGATTCTTCTGGTTAAACAGCACGGGCGGGCAAAAGGCCAGAACGACTCTTTGTTCCATCATGGATCTCAAGAACCGGAAAATTCAAGAAGCTTAGGCTGGAAAATGAGAATGGTGTACTAAAAGGGGAAAATCTTCTTACGTAGTTCGTCTCCTGATTTTTCGGATCACTGAATACAATTTTTAAGATTTGCGTATGTCAAAAAAGTCCGCACAAATATGTGGGTGGGGGATAATAATAAGAAAATTATCACATGTATCTTGTGATGTAACATTCAAGAAGGCATAAGAAGGAGGATTCCAGAAATGAATAACAAAAACCTCTAAATTTTGTCAAGAGTCCGAAAGTGGGATTACCGTACTTCCTCGAATAGAAGCCCACCAAAACCGTCCACTTTAAGCCGATATATCTCGTTTCATGTAAGAGATGTCGAAAAGTTGTCAACTGACAAAACGTTTATCATAATATCATGAATATTTTGCTAGTTGATCACTTTTTCATATTTCTAACAGGAATCGAGATAAATCAAATCAAAGT</canonical>
            <polymorphic>AAATGCAAAGTTTTCAATCTAGGTATGTTTTATACCCTCCATAATTTTCAATGTGATCGAAAACTTGACAGCCGAGCTTCAGGCTTATGAAAATGTTCACAATAACAGAAAACCAAGAACAAAAATAAAAAATAGGTGCCTGATGGGGTGCTGATCTAATAGAGAAAAAGGTTTAATAAAAAACTATACCTGTCAAATCTCAAATATCTAATTTTGTATAGTTGCGCTAAAATAGAAGATATAGAGCTTGAAAAGCTTGAAAACAGGTGCAAAAATCCAAGGAAATTAAAAATTAAAAGAAAAAAGATTACTAGAAAAGTCTATTTCCGGGTTTCACACCCGGAATACCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATACGTACACTTTTCGTCACCTCCAAACAACACAACGCCATGTTTGTTCAATTTGAATTTAAGCAAATATTTTTGCGATTCTTCTGGTTAAACAGCACGGGCGGGCAAAAGRCCAGAACGACTCTTTGTTCCATCATGGATCTCAAGAACCGGAAAATTCAAGAAGCTTAGGCTGGAAAATGAGAATGGTGTACTAAAAGGGGAAAATCTTCTTACGTAGTTCGTCTCCTGATTTTTCGGATCACTGAATACAATTTTTAAGATTTGCGTATGTCAAAAAAGTCCGCACAAATATGTGGGTGGGGGATAATAATAAGAAAATTATCACATGTATCTTGTGATGTAACATTCAAGAAGGCATAAGAAGGAGGATTCCAGAAATGAATAACAAAAACCTCTAAATTTTGTCAAGAGTCCGAAAGTGGGATTACCGTACTTCCTCGAATAGAAGCCCACCAAAACCGTCCACTTTAAGCCGATATATCTCGTTTCATGTAAGAGATGTCGAAAAGTTGTCAACTGACAAAACGTTTATCATAATATCATGAATATTTTGCTAGTTGATCACTTTTTCATATTTCTAACAGGAATCGAGATAAATCAAATCAAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>279 245 163 137 71 54 24 9 7 6 5</canonical_bands>
                <polymorphic_bands>299 279 163 137 71 24 9 7 6 5</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATACCAGCAAATTTTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTAGTACACCATTCTCATT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAATACCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATACGTACACTTTTCGTCACCTCCAAACAACACAACGCCATGTTTGTTCAATTTGAATTTAAGCAAATATTTTTGCGATTCTTCTGGTTAAACAGCACGGGCGGGCAAAAGGCCAGAACGACTCTTTGTTCCATCATGGATCTCAAGAACCGGAAAATTCAAGAAGCTTAGGCTGGAAAATGAGAATGGTGTACTAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>GAATACCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATACGTACACTTTTCGTCACCTCCAAACAACACAACGCCATGTTTGTTCAATTTGAATTTAAGCAAATATTTTTGCGATTCTTCTGGTTAAACAGCACGGGCGGGCAAAAGRCCAGAACGACTCTTTGTTCCATCATGGATCTCAAGAACCGGAAAATTCAAGAAGCTTAGGCTGGAAAATGAGAATGGTGTACTAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15222</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>217880</contig_pos>
        <strand>+</strand>
        <context>AATACGTACA[C/T]TTTTCGTCAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATACGTACA</left_flank>
        <right_flank>TTTTCGTCACCTCCAAACAACACAACGCCATGTTTGTTCAATTTGAATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTGCCGGTTTTTAAAACTCACCTTTTTCCACATTTTCAGTAAAAAAGAGGTAGAAATCGGCATATATCTGGTAAACTAGGAATTTTCGAAAAATTCTGTAAATGCAAAGTTTTCAATCTAGGTATGTTTTATACCCTCCATAATTTTCAATGTGATCGAAAACTTGACAGCCGAGCTTCAGGCTTATGAAAATGTTCACAATAACAGAAAACCAAGAACAAAAATAAAAAATAGGTGCCTGATGGGGTGCTGATCTAATAGAGAAAAAGGTTTAATAAAAAACTATACCTGTCAAATCTCAAATATCTAATTTTGTATAGTTGCGCTAAAATAGAAGATATAGAGCTTGAAAAGCTTGAAAACAGGTGCAAAAATCCAAGGAAATTAAAAATTAAAAGAAAAAAGATTACTAGAAAAGTCTATTTCCGGGTTTCACACCCGGAATACCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATACGTACACTTTTCGTCACCTCCAAACAACACAACGCCATGTTTGTTCAATTTGAATTTAAGCAAATATTTTTGCGATTCTTCTGGTTAAACAGCACGGGCGGGCAAAAGGCCAGAACGACTCTTTGTTCCATCATGGATCTCAAGAACCGGAAAATTCAAGAAGCTTAGGCTGGAAAATGAGAATGGTGTACTAAAAGGGGAAAATCTTCTTACGTAGTTCGTCTCCTGATTTTTCGGATCACTGAATACAATTTTTAAGATTTGCGTATGTCAAAAAAGTCCGCACAAATATGTGGGTGGGGGATAATAATAAGAAAATTATCACATGTATCTTGTGATGTAACATTCAAGAAGGCATAAGAAGGAGGATTCCAGAAATGAATAACAAAAACCTCTAAATTTTGTCAAGAGTCCGAAAGTGGGATTACCGTACTTCCTCGAATAGAAGCCCACCAAAACCGTCCACTTTAAGCCGATATATCTCGTTTCATGTAAGAGATGTCGAAA</canonical>
            <polymorphic>TATTTGCCGGTTTTTAAAACTCACCTTTTTCCACATTTTCAGTAAAAAAGAGGTAGAAATCGGCATATATCTGGTAAACTAGGAATTTTCGAAAAATTCTGTAAATGCAAAGTTTTCAATCTAGGTATGTTTTATACCCTCCATAATTTTCAATGTGATCGAAAACTTGACAGCCGAGCTTCAGGCTTATGAAAATGTTCACAATAACAGAAAACCAAGAACAAAAATAAAAAATAGGTGCCTGATGGGGTGCTGATCTAATAGAGAAAAAGGTTTAATAAAAAACTATACCTGTCAAATCTCAAATATCTAATTTTGTATAGTTGCGCTAAAATAGAAGATATAGAGCTTGAAAAGCTTGAAAACAGGTGCAAAAATCCAAGGAAATTAAAAATTAAAAGAAAAAAGATTACTAGAAAAGTCTATTTCCGGGTTTCACACCCGGAATACCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATACGTACAYTTTTCGTCACCTCCAAACAACACAACGCCATGTTTGTTCAATTTGAATTTAAGCAAATATTTTTGCGATTCTTCTGGTTAAACAGCACGGGCGGGCAAAAGGCCAGAACGACTCTTTGTTCCATCATGGATCTCAAGAACCGGAAAATTCAAGAAGCTTAGGCTGGAAAATGAGAATGGTGTACTAAAAGGGGAAAATCTTCTTACGTAGTTCGTCTCCTGATTTTTCGGATCACTGAATACAATTTTTAAGATTTGCGTATGTCAAAAAAGTCCGCACAAATATGTGGGTGGGGGATAATAATAAGAAAATTATCACATGTATCTTGTGATGTAACATTCAAGAAGGCATAAGAAGGAGGATTCCAGAAATGAATAACAAAAACCTCTAAATTTTGTCAAGAGTCCGAAAGTGGGATTACCGTACTTCCTCGAATAGAAGCCCACCAAAACCGTCCACTTTAAGCCGATATATCTCGTTTCATGTAAGAGATGTCGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>124 119 94 84 67 65 59 53 44 44 42 39 31 25 23 13 13 13 12 10 10 10 4 2</canonical_bands>
                <polymorphic_bands>124 119 94 84 69 67 65 53 44 44 42 39 31 25 23 13 13 13 12 10 10 4 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>298 275 184 123 76 44</canonical_bands>
                <polymorphic_bands>482 275 123 76 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATAGAGCTTGAAAAGCTTGAA</pcr_primer_p1>
		<pcr_primer_p2>GTGCTGTTTAACCAGAAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATATAGAGCTTGAAAAGCTTGAAAACAGGTGCAAAAATCCAAGGAAATTAAAAATTAAAAGAAAAAAGATTACTAGAAAAGTCTATTTCCGGGTTTCACACCCGGAATACCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATACGTACACTTTTCGTCACCTCCAAACAACACAACGCCATGTTTGTTCAATTTGAATTTAAGCAAATATTTTTGCGATTCTTCTGGTTAAACAGCAC</canonical_amplicon>
		<polymorphic_amplicon>ATATAGAGCTTGAAAAGCTTGAAAACAGGTGCAAAAATCCAAGGAAATTAAAAATTAAAAGAAAAAAGATTACTAGAAAAGTCTATTTCCGGGTTTCACACCCGGAATACCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATACGTACAYTTTTCGTCACCTCCAAACAACACAACGCCATGTTTGTTCAATTTGAATTTAAGCAAATATTTTTGCGATTCTTCTGGTTAAACAGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15223</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>217792</contig_pos>
        <strand></strand>
        <context>AAAAAAGATT[A/T]CTAGAAAWGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAACAGGTGCAAAAATCCAAGGAAATTAAAAATTAAAAGAAAAAAGATT</left_flank>
        <right_flank>CTAGAAAAGTCTATTTCCGGGTTTCACACCCGGAATACCAGCAAATTTTG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCACTTTGAAAACGTTTGAGTGTGTAAAACAAATCTAGATGGAAAATTTCGAATTCACATAATTTCTAAAAATCACTAGTTTTCAGCTATTTGCCGGTTTTTAAAACTCACCTTTTTCCACATTTTCAGTAAAAAAGAGGTAGAAATCGGCATATATCTGGTAAACTAGGAATTTTCGAAAAATTCTGTAAATGCAAAGTTTTCAATCTAGGTATGTTTTATACCCTCCATAATTTTCAATGTGATCGAAAACTTGACAGCCGAGCTTCAGGCTTATGAAAATGTTCACAATAACAGAAAACCAAGAACAAAAATAAAAAATAGGTGCCTGATGGGGTGCTGATCTAATAGAGAAAAAGGTTTAATAAAAAACTATACCTGTCAAATCTCAAATATCTAATTTTGTATAGTTGCGCTAAAATAGAAGATATAGAGCTTGAAAAGCTTGAAAACAGGTGCAAAAATCCAAGGAAATTAAAAATTAAAAGAAAAAAGATTACTAGAAAAGTCTATTTCCGGGTTTCACACCCGGAATACCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATACGTACACTTTTCGTCACCTCCAAACAACACAACGCCATGTTTGTTCAATTTGAATTTAAGCAAATATTTTTGCGATTCTTCTGGTTAAACAGCACGGGCGGGCAAAAGGCCAGAACGACTCTTTGTTCCATCATGGATCTCAAGAACCGGAAAATTCAAGAAGCTTAGGCTGGAAAATGAGAATGGTGTACTAAAAGGGGAAAATCTTCTTACGTAGTTCGTCTCCTGATTTTTCGGATCACTGAATACAATTTTTAAGATTTGCGTATGTCAAAAAAGTCCGCACAAATATGTGGGTGGGGGATAATAATAAGAAAATTATCACATGTATCTTGTGATGTAACATTCAAGAAGGCATAAGAAGGAGGATTCCAGAAATGAATAACAAAAACCTCTAAATTTTGTCAAGAGTCCGAAAG</canonical>
            <polymorphic>ATCACTTTGAAAACGTTTGAGTGTGTAAAACAAATCTAGATGGAAAATTTCGAATTCACATAATTTCTAAAAATCACTAGTTTTCAGCTATTTGCCGGTTTTTAAAACTCACCTTTTTCCACATTTTCAGTAAAAAAGAGGTAGAAATCGGCATATATCTGGTAAACTAGGAATTTTCGAAAAATTCTGTAAATGCAAAGTTTTCAATCTAGGTATGTTTTATACCCTCCATAATTTTCAATGTGATCGAAAACTTGACAGCCGAGCTTCAGGCTTATGAAAATGTTCACAATAACAGAAAACCAAGAACAAAAATAAAAAATAGGTGCCTGATGGGGTGCTGATCTAATAGAGAAAAAGGTTTAATAAAAAACTATACCTGTCAAATCTCAAATATCTAATTTTGTATAGTTGCGCTAAAATAGAAGATATAGAGCTTGAAAAGCTTGAAAACAGGTGCAAAAATCCAAGGAAATTAAAAATTAAAAGAAAAAAGATTWCTAGAAAAGTCTATTTCCGGGTTTCACACCCGGAATACCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATACGTACACTTTTCGTCACCTCCAAACAACACAACGCCATGTTTGTTCAATTTGAATTTAAGCAAATATTTTTGCGATTCTTCTGGTTAAACAGCACGGGCGGGCAAAAGGCCAGAACGACTCTTTGTTCCATCATGGATCTCAAGAACCGGAAAATTCAAGAAGCTTAGGCTGGAAAATGAGAATGGTGTACTAAAAGGGGAAAATCTTCTTACGTAGTTCGTCTCCTGATTTTTCGGATCACTGAATACAATTTTTAAGATTTGCGTATGTCAAAAAAGTCCGCACAAATATGTGGGTGGGGGATAATAATAAGAAAATTATCACATGTATCTTGTGATGTAACATTCAAGAAGGCATAAGAAGGAGGATTCCAGAAATGAATAACAAAAACCTCTAAATTTTGTCAAGAGTCCGAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATAGAGCTTGAAAAGCTTGAA</pcr_primer_p1>
		<pcr_primer_p2>GTGCTGTTTAACCAGAAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATATAGAGCTTGAAAAGCTTGAAAACAGGTGCAAAAATCCAAGGAAATTAAAAATTAAAAGAAAAAAGATTACTAGAAAAGTCTATTTCCGGGTTTCACACCCGGAATACCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATACGTACACTTTTCGTCACCTCCAAACAACACAACGCCATGTTTGTTCAATTTGAATTTAAGCAAATATTTTTGCGATTCTTCTGGTTAAACAGCAC</canonical_amplicon>
		<polymorphic_amplicon>ATATAGAGCTTGAAAAGCTTGAAAACAGGTGCAAAAATCCAAGGAAATTAAAAATTAAAAGAAAAAAGATTWCTAGAAAAGTCTATTTCCGGGTTTCACACCCGGAATACCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATACGTACACTTTTCGTCACCTCCAAACAACACAACGCCATGTTTGTTCAATTTGAATTTAAGCAAATATTTTTGCGATTCTTCTGGTTAAACAGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15224</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>217761</contig_pos>
        <strand></strand>
        <context>GCAAAAATCC[A/G]AGGAAATTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATAGAAGATATAGAGCTTGAAAAGCTTGAAAACAGGTGCAAAAATCC</left_flank>
        <right_flank>AGGAAATTAAAAATTAAAAGAAAAAAGATTACTAGAAAAGTCTATTTCCG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATAAAAAATTCATCAGTGGTCAACTTCCCGATCACTTTGAAAACGTTTGAGTGTGTAAAACAAATCTAGATGGAAAATTTCGAATTCACATAATTTCTAAAAATCACTAGTTTTCAGCTATTTGCCGGTTTTTAAAACTCACCTTTTTCCACATTTTCAGTAAAAAAGAGGTAGAAATCGGCATATATCTGGTAAACTAGGAATTTTCGAAAAATTCTGTAAATGCAAAGTTTTCAATCTAGGTATGTTTTATACCCTCCATAATTTTCAATGTGATCGAAAACTTGACAGCCGAGCTTCAGGCTTATGAAAATGTTCACAATAACAGAAAACCAAGAACAAAAATAAAAAATAGGTGCCTGATGGGGTGCTGATCTAATAGAGAAAAAGGTTTAATAAAAAACTATACCTGTCAAATCTCAAATATCTAATTTTGTATAGTTGCGCTAAAATAGAAGATATAGAGCTTGAAAAGCTTGAAAACAGGTGCAAAAATCCAAGGAAATTAAAAATTAAAAGAAAAAAGATTACTAGAAAAGTCTATTTCCGGGTTTCACACCCGGAATACCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATACGTACACTTTTCGTCACCTCCAAACAACACAACGCCATGTTTGTTCAATTTGAATTTAAGCAAATATTTTTGCGATTCTTCTGGTTAAACAGCACGGGCGGGCAAAAGGCCAGAACGACTCTTTGTTCCATCATGGATCTCAAGAACCGGAAAATTCAAGAAGCTTAGGCTGGAAAATGAGAATGGTGTACTAAAAGGGGAAAATCTTCTTACGTAGTTCGTCTCCTGATTTTTCGGATCACTGAATACAATTTTTAAGATTTGCGTATGTCAAAAAAGTCCGCACAAATATGTGGGTGGGGGATAATAATAAGAAAATTATCACATGTATCTTGTGATGTAACATTCAAGAAGGCATAAGAAGGAGGATTCCAGAAATGAATAACAA</canonical>
            <polymorphic>GATAAAAAATTCATCAGTGGTCAACTTCCCGATCACTTTGAAAACGTTTGAGTGTGTAAAACAAATCTAGATGGAAAATTTCGAATTCACATAATTTCTAAAAATCACTAGTTTTCAGCTATTTGCCGGTTTTTAAAACTCACCTTTTTCCACATTTTCAGTAAAAAAGAGGTAGAAATCGGCATATATCTGGTAAACTAGGAATTTTCGAAAAATTCTGTAAATGCAAAGTTTTCAATCTAGGTATGTTTTATACCCTCCATAATTTTCAATGTGATCGAAAACTTGACAGCCGAGCTTCAGGCTTATGAAAATGTTCACAATAACAGAAAACCAAGAACAAAAATAAAAAATAGGTGCCTGATGGGGTGCTGATCTAATAGAGAAAAAGGTTTAATAAAAAACTATACCTGTCAAATCTCAAATATCTAATTTTGTATAGTTGCGCTAAAATAGAAGATATAGAGCTTGAAAAGCTTGAAAACAGGTGCAAAAATCCRAGGAAATTAAAAATTAAAAGAAAAAAGATTACTAGAAAAGTCTATTTCCGGGTTTCACACCCGGAATACCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATACGTACACTTTTCGTCACCTCCAAACAACACAACGCCATGTTTGTTCAATTTGAATTTAAGCAAATATTTTTGCGATTCTTCTGGTTAAACAGCACGGGCGGGCAAAAGGCCAGAACGACTCTTTGTTCCATCATGGATCTCAAGAACCGGAAAATTCAAGAAGCTTAGGCTGGAAAATGAGAATGGTGTACTAAAAGGGGAAAATCTTCTTACGTAGTTCGTCTCCTGATTTTTCGGATCACTGAATACAATTTTTAAGATTTGCGTATGTCAAAAAAGTCCGCACAAATATGTGGGTGGGGGATAATAATAAGAAAATTATCACATGTATCTTGTGATGTAACATTCAAGAAGGCATAAGAAGGAGGATTCCAGAAATGAATAACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGCTGATCTAATAGAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GTATTAGAGAACGCGAAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGTGCTGATCTAATAGAGAAAAAGGTTTAATAAAAAACTATACCTGTCAAATCTCAAATATCTAATTTTGTATAGTTGCGCTAAAATAGAAGATATAGAGCTTGAAAAGCTTGAAAACAGGTGCAAAAATCCAAGGAAATTAAAAATTAAAAGAAAAAAGATTACTAGAAAAGTCTATTTCCGGGTTTCACACCCGGAATACCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATAC</canonical_amplicon>
		<polymorphic_amplicon>GGTGCTGATCTAATAGAGAAAAAGGTTTAATAAAAAACTATACCTGTCAAATCTCAAATATCTAATTTTGTATAGTTGCGCTAAAATAGAAGATATAGAGCTTGAAAAGCTTGAAAACAGGTGCAAAAATCCRAGGAAATTAAAAATTAAAAGAAAAAAGATTACTAGAAAAGTCTATTTCCGGGTTTCACACCCGGAATACCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15225</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>260968</contig_pos>
        <strand>+</strand>
        <context>AAAAGTAAAC[A/T]TAAATCCACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTACATGGGGATCATGTGGTCCCGCCCGTTTCACAACAAAAAAGTAAAC</left_flank>
        <right_flank>TAAATCCACTTTTCACCATTATGCTCCGCCCGTTTTTGTATTATGCTCCG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTAGACTGAAAACAATAGAGTATTAATTTCAAAAGTAACTCTATACATGTGGGCGGTCCCAGACACTAATGAATTATGTGTTTAAAAAAGCGTCACCTAGAGCTTTTCAAAAATAAAAGTCGCGTAAAACCTCCAATAGAAGAGCATCCACACTGACAAGTTTGAGCTCAATTATCTCGGTTCCTGTCAGAGATAACAAATGTTTGTCAACTGATAAAATTTTTGTGATATTATGATAAACATTTTATCAGTTAAATTTTTCTTGATATCTTTGATAGGAAGCGAGGTGAATTGGCTCAAAGTTAAAGGTCAAGGGCCCAATCGGGCAAAATCAGCTTGACCAAAGTTTAACAGAAAGTGTCAAAGAAAGTTTTCTTGAAATGTTTATAGAGACAACTAAAATAAACATGTCCTATTCTGGAAACTTTTTTCTTTGAAAATGGGGACTTACATGGGGATCATGTGGTCCCGCCCGTTTCACAACAAAAAAGTAAACATAAATCCACTTTTCACCATTATGCTCCGCCCGTTTTTGTATTATGCTCCGAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAAAAAATTCGGTGGGGGTCAAAAAATCAAAAATAGTTTTGGTCTGAGAAAAGTTTCTCGGGACAAAGGTTGCTCTCGGTAGACATGTGTAGAAATTGGATGAATAAGGGGGACAAAGGGGAAACGGAAACAGGAGAAAGTTATGAATGAATTGGTGGCTATTGGGGAGAAAGAATGAGAAGGACTACCACTTTTTTGGGAGTGGACGGAAGAGTTTCGAAATGCGACGATGAACTTTAGACTTGAATTTTTATTAGAAACTAAACTTTTTTATTAGGGCATAGGGGATGGGGTTGAAAATTTGAATGCTGTT</canonical>
            <polymorphic>TTTCTAGACTGAAAACAATAGAGTATTAATTTCAAAAGTAACTCTATACATGTGGGCGGTCCCAGACACTAATGAATTATGTGTTTAAAAAAGCGTCACCTAGAGCTTTTCAAAAATAAAAGTCGCGTAAAACCTCCAATAGAAGAGCATCCACACTGACAAGTTTGAGCTCAATTATCTCGGTTCCTGTCAGAGATAACAAATGTTTGTCAACTGATAAAATTTTTGTGATATTATGATAAACATTTTATCAGTTAAATTTTTCTTGATATCTTTGATAGGAAGCGAGGTGAATTGGCTCAAAGTTAAAGGTCAAGGGCCCAATCGGGCAAAATCAGCTTGACCAAAGTTTAACAGAAAGTGTCAAAGAAAGTTTTCTTGAAATGTTTATAGAGACAACTAAAATAAACATGTCCTATTCTGGAAACTTTTTTCTTTGAAAATGGGGACTTACATGGGGATCATGTGGTCCCGCCCGTTTCACAACAAAAAAGTAAACWTAAATCCACTTTTCACCATTATGCTCCGCCCGTTTTTGTATTATGCTCCGAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAAAAAATTCGGTGGGGGTCAAAAAATCAAAAATAGTTTTGGTCTGAGAAAAGTTTCTCGGGACAAAGGTTGCTCTCGGTAGACATGTGTAGAAATTGGATGAATAAGGGGGACAAAGGGGAAACGGAAACAGGAGAAAGTTATGAATGAATTGGTGGCTATTGGGGAGAAAGAATGAGAAGGACTACCACTTTTTTGGGAGTGGACGGAAGAGTTTCGAAATGCGACGATGAACTTTAGACTTGAATTTTTATTAGAAACTAAACTTTTTTATTAGGGCATAGGGGATGGGGTTGAAAATTTGAATGCTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTACATGGGGATCATGTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCACTTTCTAAGCACCTAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ACTTACATGGGGATCATGTGGTCCCGCCCGTTTCACAACAAAAAAGTAAACATAAATCCACTTTTCACCATTATGCTCCGCCCGTTTTTGTATTATGCTCCGAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACTTACATGGGGATCATGTGGTCCCGCCCGTTTCACAACAAAAAAGTAAACWTAAATCCACTTTTCACCATTATGCTCCGCCCGTTTTTGTATTATGCTCCGAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15227</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>262440</contig_pos>
        <strand>+</strand>
        <context>TTTTTTTGGR[A/C]AAAAAATTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTGTCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGGG</left_flank>
        <right_flank>AAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTATCTCGATTCCTATAAAAGATATCAAAAATGTGTAAACTGATAAAATATTGATCACATTGTCACAAATATTTTATCAGTTAACAAACTTTTGATATCTTACACAGAAATCGATATAATTGAAATACGGTAATTTAAACTTTTAAAAAAATCGAGACATTTTTTAGAAAATTAGAGACTAGAAAAGTCCTAGATCCATCTGCTCATCCCTAAAAAACAGAACAAGAATTGACACCAAAAATGGAAAAGTGGAGAAAAAATATCTGAAAGTGGGACAATGAATCAGGCGGCTCGTTAGTATTCATGGATCGGAAATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCATTGTCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGGGAAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATTTGAGCTCTCGAAAAATATTTTTCTCCATTCGAACTAAAATACGAAATTCGAGAAGGTGATAAGAGAAATATAAGATATCTGGCTGACTAATTTTTGACGCCTGGATTTCCATTTTTTCGTGTTTTGGATTGAGTGTGACGAATGATGTTCTATTTTTTACTGGAGGGAATACAAGGAACATGGTAATGGAGGAATGAAAAAAGAGGGATGAGGCATAGAAAAATTTTTGGATAATAAGATTTTTGGGAAGGATGAATAATAGATAGAGGGAAAGCTGAAAAAGTGGAGTTGAACAAAATGTATTCTAGGTTTTGATTTTTGGAAAAAGGTATAATTTGTCGGCCAAAAAAATTGACCAAGTGTAGCTTACCGTAAGCCTTGTAATAGAATCACCCTCCCCTCAACTTTTTCAACTTTGAGCCAAATTTTCTAAGTTCTTGTCAAAGATAT</canonical>
            <polymorphic>CAATTATCTCGATTCCTATAAAAGATATCAAAAATGTGTAAACTGATAAAATATTGATCACATTGTCACAAATATTTTATCAGTTAACAAACTTTTGATATCTTACACAGAAATCGATATAATTGAAATACGGTAATTTAAACTTTTAAAAAAATCGAGACATTTTTTAGAAAATTAGAGACTAGAAAAGTCCTAGATCCATCTGCTCATCCCTAAAAAACAGAACAAGAATTGACACCAAAAATGGAAAAGTGGAGAAAAAATATCTGAAAGTGGGACAATGAATCAGGCGGCTCGTTAGTATTCATGGATCGGAAATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCATTGTCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGGGMAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATTTGAGCTCTCGAAAAATATTTTTCTCCATTCGAACTAAAATACGAAATTCGAGAAGGTGATAAGAGAAATATAAGATATCTGGCTGACTAATTTTTGACGCCTGGATTTCCATTTTTTCGTGTTTTGGATTGAGTGTGACGAATGATGTTCTATTTTTTACTGGAGGGAATACAAGGAACATGGTAATGGAGGAATGAAAAAAGAGGGATGAGGCATAGAAAAATTTTTGGATAATAAGATTTTTGGGAAGGATGAATAATAGATAGAGGGAAAGCTGAAAAAGTGGAGTTGAACAAAATGTATTCTAGGTTTTGATTTTTGGAAAAAGGTATAATTTGTCGGCCAAAAAAATTGACCAAGTGTAGCTTACCGTAAGCCTTGTAATAGAATCACCCTCCCCTCAACTTTTTCAACTTTGAGCCAAATTTTCTAAGTTCTTGTCAAAGATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGTCTGTGCTCCTTCTTATTT</pcr_primer_p1>
		<pcr_primer_p2>TATTTTTCGAGAGCTCAAATTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCATTGTCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGGGAAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATTTGAGCTCTCGAAAAATA</canonical_amplicon>
		<polymorphic_amplicon>ATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCATTGTCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGGGMAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATTTGAGCTCTCGAAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15228</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>262439</contig_pos>
        <strand>+</strand>
        <context>ATTTTTTTGG[A/G]MAAAAAATTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTGTCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGG</left_flank>
        <right_flank>AAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAATTATCTCGATTCCTATAAAAGATATCAAAAATGTGTAAACTGATAAAATATTGATCACATTGTCACAAATATTTTATCAGTTAACAAACTTTTGATATCTTACACAGAAATCGATATAATTGAAATACGGTAATTTAAACTTTTAAAAAAATCGAGACATTTTTTAGAAAATTAGAGACTAGAAAAGTCCTAGATCCATCTGCTCATCCCTAAAAAACAGAACAAGAATTGACACCAAAAATGGAAAAGTGGAGAAAAAATATCTGAAAGTGGGACAATGAATCAGGCGGCTCGTTAGTATTCATGGATCGGAAATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCATTGTCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGGGAAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATTTGAGCTCTCGAAAAATATTTTTCTCCATTCGAACTAAAATACGAAATTCGAGAAGGTGATAAGAGAAATATAAGATATCTGGCTGACTAATTTTTGACGCCTGGATTTCCATTTTTTCGTGTTTTGGATTGAGTGTGACGAATGATGTTCTATTTTTTACTGGAGGGAATACAAGGAACATGGTAATGGAGGAATGAAAAAAGAGGGATGAGGCATAGAAAAATTTTTGGATAATAAGATTTTTGGGAAGGATGAATAATAGATAGAGGGAAAGCTGAAAAAGTGGAGTTGAACAAAATGTATTCTAGGTTTTGATTTTTGGAAAAAGGTATAATTTGTCGGCCAAAAAAATTGACCAAGTGTAGCTTACCGTAAGCCTTGTAATAGAATCACCCTCCCCTCAACTTTTTCAACTTTGAGCCAAATTTTCTAAGTTCTTGTCAAAGATA</canonical>
            <polymorphic>TCAATTATCTCGATTCCTATAAAAGATATCAAAAATGTGTAAACTGATAAAATATTGATCACATTGTCACAAATATTTTATCAGTTAACAAACTTTTGATATCTTACACAGAAATCGATATAATTGAAATACGGTAATTTAAACTTTTAAAAAAATCGAGACATTTTTTAGAAAATTAGAGACTAGAAAAGTCCTAGATCCATCTGCTCATCCCTAAAAAACAGAACAAGAATTGACACCAAAAATGGAAAAGTGGAGAAAAAATATCTGAAAGTGGGACAATGAATCAGGCGGCTCGTTAGTATTCATGGATCGGAAATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCATTGTCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGGRAAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATTTGAGCTCTCGAAAAATATTTTTCTCCATTCGAACTAAAATACGAAATTCGAGAAGGTGATAAGAGAAATATAAGATATCTGGCTGACTAATTTTTGACGCCTGGATTTCCATTTTTTCGTGTTTTGGATTGAGTGTGACGAATGATGTTCTATTTTTTACTGGAGGGAATACAAGGAACATGGTAATGGAGGAATGAAAAAAGAGGGATGAGGCATAGAAAAATTTTTGGATAATAAGATTTTTGGGAAGGATGAATAATAGATAGAGGGAAAGCTGAAAAAGTGGAGTTGAACAAAATGTATTCTAGGTTTTGATTTTTGGAAAAAGGTATAATTTGTCGGCCAAAAAAATTGACCAAGTGTAGCTTACCGTAAGCCTTGTAATAGAATCACCCTCCCCTCAACTTTTTCAACTTTGAGCCAAATTTTCTAAGTTCTTGTCAAAGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGTCTGTGCTCCTTCTTATTT</pcr_primer_p1>
		<pcr_primer_p2>TATTTTTCGAGAGCTCAAATTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCATTGTCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGGGAAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATTTGAGCTCTCGAAAAATA</canonical_amplicon>
		<polymorphic_amplicon>ATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCATTGTCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGGRAAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATTTGAGCTCTCGAAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15229</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>262421</contig_pos>
        <strand>+</strand>
        <context>TGTATATAAG[A/G]AACTTAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTGTAGCTTTCTGACTCATTGTCAGAAATAGTAACCTATGTATATAAG</left_flank>
        <right_flank>AACTTAAATTTTTTTGGGAAAAAAATTAAGATCCTAAAAATGTATTTTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCACCCGAACTTTGTACTCAATTATCTCGATTCCTATAAAAGATATCAAAAATGTGTAAACTGATAAAATATTGATCACATTGTCACAAATATTTTATCAGTTAACAAACTTTTGATATCTTACACAGAAATCGATATAATTGAAATACGGTAATTTAAACTTTTAAAAAAATCGAGACATTTTTTAGAAAATTAGAGACTAGAAAAGTCCTAGATCCATCTGCTCATCCCTAAAAAACAGAACAAGAATTGACACCAAAAATGGAAAAGTGGAGAAAAAATATCTGAAAGTGGGACAATGAATCAGGCGGCTCGTTAGTATTCATGGATCGGAAATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCATTGTCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGGGAAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATTTGAGCTCTCGAAAAATATTTTTCTCCATTCGAACTAAAATACGAAATTCGAGAAGGTGATAAGAGAAATATAAGATATCTGGCTGACTAATTTTTGACGCCTGGATTTCCATTTTTTCGTGTTTTGGATTGAGTGTGACGAATGATGTTCTATTTTTTACTGGAGGGAATACAAGGAACATGGTAATGGAGGAATGAAAAAAGAGGGATGAGGCATAGAAAAATTTTTGGATAATAAGATTTTTGGGAAGGATGAATAATAGATAGAGGGAAAGCTGAAAAAGTGGAGTTGAACAAAATGTATTCTAGGTTTTGATTTTTGGAAAAAGGTATAATTTGTCGGCCAAAAAAATTGACCAAGTGTAGCTTACCGTAAGCCTTGTAATAGAATCACCCTCCCCTCAACTTTTTCAACTTTGAGCCAAATTTTCT</canonical>
            <polymorphic>CCCACCCGAACTTTGTACTCAATTATCTCGATTCCTATAAAAGATATCAAAAATGTGTAAACTGATAAAATATTGATCACATTGTCACAAATATTTTATCAGTTAACAAACTTTTGATATCTTACACAGAAATCGATATAATTGAAATACGGTAATTTAAACTTTTAAAAAAATCGAGACATTTTTTAGAAAATTAGAGACTAGAAAAGTCCTAGATCCATCTGCTCATCCCTAAAAAACAGAACAAGAATTGACACCAAAAATGGAAAAGTGGAGAAAAAATATCTGAAAGTGGGACAATGAATCAGGCGGCTCGTTAGTATTCATGGATCGGAAATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCATTGTCAGAAATAGTAACCTATGTATATAAGRAACTTAAATTTTTTTGGGAAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATTTGAGCTCTCGAAAAATATTTTTCTCCATTCGAACTAAAATACGAAATTCGAGAAGGTGATAAGAGAAATATAAGATATCTGGCTGACTAATTTTTGACGCCTGGATTTCCATTTTTTCGTGTTTTGGATTGAGTGTGACGAATGATGTTCTATTTTTTACTGGAGGGAATACAAGGAACATGGTAATGGAGGAATGAAAAAAGAGGGATGAGGCATAGAAAAATTTTTGGATAATAAGATTTTTGGGAAGGATGAATAATAGATAGAGGGAAAGCTGAAAAAGTGGAGTTGAACAAAATGTATTCTAGGTTTTGATTTTTGGAAAAAGGTATAATTTGTCGGCCAAAAAAATTGACCAAGTGTAGCTTACCGTAAGCCTTGTAATAGAATCACCCTCCCCTCAACTTTTTCAACTTTGAGCCAAATTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGTCTGTGCTCCTTCTTATTT</pcr_primer_p1>
		<pcr_primer_p2>TATTTTTCGAGAGCTCAAATTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCATTGTCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGGGAAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATTTGAGCTCTCGAAAAATA</canonical_amplicon>
		<polymorphic_amplicon>ATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCATTGTCAGAAATAGTAACCTATGTATATAAGRAACTTAAATTTTTTTGGGAAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATTTGAGCTCTCGAAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15230</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>262393</contig_pos>
        <strand>+</strand>
        <context>CTGACTCATT[A/G]TCAGAAATAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCATT</left_flank>
        <right_flank>TCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGGGAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACTACCGTATTTCCTCTAATGGAACCCCACCCGAACTTTGTACTCAATTATCTCGATTCCTATAAAAGATATCAAAAATGTGTAAACTGATAAAATATTGATCACATTGTCACAAATATTTTATCAGTTAACAAACTTTTGATATCTTACACAGAAATCGATATAATTGAAATACGGTAATTTAAACTTTTAAAAAAATCGAGACATTTTTTAGAAAATTAGAGACTAGAAAAGTCCTAGATCCATCTGCTCATCCCTAAAAAACAGAACAAGAATTGACACCAAAAATGGAAAAGTGGAGAAAAAATATCTGAAAGTGGGACAATGAATCAGGCGGCTCGTTAGTATTCATGGATCGGAAATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCATTGTCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGGGAAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATTTGAGCTCTCGAAAAATATTTTTCTCCATTCGAACTAAAATACGAAATTCGAGAAGGTGATAAGAGAAATATAAGATATCTGGCTGACTAATTTTTGACGCCTGGATTTCCATTTTTTCGTGTTTTGGATTGAGTGTGACGAATGATGTTCTATTTTTTACTGGAGGGAATACAAGGAACATGGTAATGGAGGAATGAAAAAAGAGGGATGAGGCATAGAAAAATTTTTGGATAATAAGATTTTTGGGAAGGATGAATAATAGATAGAGGGAAAGCTGAAAAAGTGGAGTTGAACAAAATGTATTCTAGGTTTTGATTTTTGGAAAAAGGTATAATTTGTCGGCCAAAAAAATTGACCAAGTGTAGCTTACCGTAAGCCTTGTAATAGAATCACCCTCCCCTCA</canonical>
            <polymorphic>AAAACTACCGTATTTCCTCTAATGGAACCCCACCCGAACTTTGTACTCAATTATCTCGATTCCTATAAAAGATATCAAAAATGTGTAAACTGATAAAATATTGATCACATTGTCACAAATATTTTATCAGTTAACAAACTTTTGATATCTTACACAGAAATCGATATAATTGAAATACGGTAATTTAAACTTTTAAAAAAATCGAGACATTTTTTAGAAAATTAGAGACTAGAAAAGTCCTAGATCCATCTGCTCATCCCTAAAAAACAGAACAAGAATTGACACCAAAAATGGAAAAGTGGAGAAAAAATATCTGAAAGTGGGACAATGAATCAGGCGGCTCGTTAGTATTCATGGATCGGAAATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCATTRTCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGGGAAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATTTGAGCTCTCGAAAAATATTTTTCTCCATTCGAACTAAAATACGAAATTCGAGAAGGTGATAAGAGAAATATAAGATATCTGGCTGACTAATTTTTGACGCCTGGATTTCCATTTTTTCGTGTTTTGGATTGAGTGTGACGAATGATGTTCTATTTTTTACTGGAGGGAATACAAGGAACATGGTAATGGAGGAATGAAAAAAGAGGGATGAGGCATAGAAAAATTTTTGGATAATAAGATTTTTGGGAAGGATGAATAATAGATAGAGGGAAAGCTGAAAAAGTGGAGTTGAACAAAATGTATTCTAGGTTTTGATTTTTGGAAAAAGGTATAATTTGTCGGCCAAAAAAATTGACCAAGTGTAGCTTACCGTAAGCCTTGTAATAGAATCACCCTCCCCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNNNGTC</site>
                <isoschizomers>
                    <enzyme>AhdI</enzyme>
                    <enzyme>AspEI</enzyme>
                    <enzyme>Eam1105I</enzyme>
                    <enzyme>EclHKI</enzyme>
                    <enzyme>NruGI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGTCTGTGCTCCTTCTTATTT</pcr_primer_p1>
		<pcr_primer_p2>TATTTTTCGAGAGCTCAAATTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCATTGTCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGGGAAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATTTGAGCTCTCGAAAAATA</canonical_amplicon>
		<polymorphic_amplicon>ATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCATTRTCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGGGAAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATTTGAGCTCTCGAAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15231</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>262359</contig_pos>
        <strand>+</strand>
        <context>TAGGACTTTT[G/T]TATTTTAGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTT</left_flank>
        <right_flank>TATTTTAGGGAAATTGTAGCTTTCTGACTCATTGTCAGAAATAGTAACCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAAGGAAAAACGGTTTTTTTTAGTCATCGGAAAAAACTACCGTATTTCCTCTAATGGAACCCCACCCGAACTTTGTACTCAATTATCTCGATTCCTATAAAAGATATCAAAAATGTGTAAACTGATAAAATATTGATCACATTGTCACAAATATTTTATCAGTTAACAAACTTTTGATATCTTACACAGAAATCGATATAATTGAAATACGGTAATTTAAACTTTTAAAAAAATCGAGACATTTTTTAGAAAATTAGAGACTAGAAAAGTCCTAGATCCATCTGCTCATCCCTAAAAAACAGAACAAGAATTGACACCAAAAATGGAAAAGTGGAGAAAAAATATCTGAAAGTGGGACAATGAATCAGGCGGCTCGTTAGTATTCATGGATCGGAAATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCATTGTCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGGGAAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATTTGAGCTCTCGAAAAATATTTTTCTCCATTCGAACTAAAATACGAAATTCGAGAAGGTGATAAGAGAAATATAAGATATCTGGCTGACTAATTTTTGACGCCTGGATTTCCATTTTTTCGTGTTTTGGATTGAGTGTGACGAATGATGTTCTATTTTTTACTGGAGGGAATACAAGGAACATGGTAATGGAGGAATGAAAAAAGAGGGATGAGGCATAGAAAAATTTTTGGATAATAAGATTTTTGGGAAGGATGAATAATAGATAGAGGGAAAGCTGAAAAAGTGGAGTTGAACAAAATGTATTCTAGGTTTTGATTTTTGGAAAAAGGTATAATTTGTCGGCCAAAAAAATTGACCAAGTGTAGCTTA</canonical>
            <polymorphic>TTTAAGGAAAAACGGTTTTTTTTAGTCATCGGAAAAAACTACCGTATTTCCTCTAATGGAACCCCACCCGAACTTTGTACTCAATTATCTCGATTCCTATAAAAGATATCAAAAATGTGTAAACTGATAAAATATTGATCACATTGTCACAAATATTTTATCAGTTAACAAACTTTTGATATCTTACACAGAAATCGATATAATTGAAATACGGTAATTTAAACTTTTAAAAAAATCGAGACATTTTTTAGAAAATTAGAGACTAGAAAAGTCCTAGATCCATCTGCTCATCCCTAAAAAACAGAACAAGAATTGACACCAAAAATGGAAAAGTGGAGAAAAAATATCTGAAAGTGGGACAATGAATCAGGCGGCTCGTTAGTATTCATGGATCGGAAATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTTKTATTTTAGGGAAATTGTAGCTTTCTGACTCATTGTCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGGGAAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATTTGAGCTCTCGAAAAATATTTTTCTCCATTCGAACTAAAATACGAAATTCGAGAAGGTGATAAGAGAAATATAAGATATCTGGCTGACTAATTTTTGACGCCTGGATTTCCATTTTTTCGTGTTTTGGATTGAGTGTGACGAATGATGTTCTATTTTTTACTGGAGGGAATACAAGGAACATGGTAATGGAGGAATGAAAAAAGAGGGATGAGGCATAGAAAAATTTTTGGATAATAAGATTTTTGGGAAGGATGAATAATAGATAGAGGGAAAGCTGAAAAAGTGGAGTTGAACAAAATGTATTCTAGGTTTTGATTTTTGGAAAAAGGTATAATTTGTCGGCCAAAAAAATTGACCAAGTGTAGCTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGTCTGTGCTCCTTCTTATTT</pcr_primer_p1>
		<pcr_primer_p2>TATTTTTCGAGAGCTCAAATTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCATTGTCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGGGAAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATTTGAGCTCTCGAAAAATA</canonical_amplicon>
		<polymorphic_amplicon>ATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTTKTATTTTAGGGAAATTGTAGCTTTCTGACTCATTGTCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGGGAAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATTTGAGCTCTCGAAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15232</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>262345</contig_pos>
        <strand>+</strand>
        <context>ATTAGAAAGA[A/C]AAATAGGACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGA</left_flank>
        <right_flank>AAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCATTGTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAATCTCAAAATTTAAGGAAAAACGGTTTTTTTTAGTCATCGGAAAAAACTACCGTATTTCCTCTAATGGAACCCCACCCGAACTTTGTACTCAATTATCTCGATTCCTATAAAAGATATCAAAAATGTGTAAACTGATAAAATATTGATCACATTGTCACAAATATTTTATCAGTTAACAAACTTTTGATATCTTACACAGAAATCGATATAATTGAAATACGGTAATTTAAACTTTTAAAAAAATCGAGACATTTTTTAGAAAATTAGAGACTAGAAAAGTCCTAGATCCATCTGCTCATCCCTAAAAAACAGAACAAGAATTGACACCAAAAATGGAAAAGTGGAGAAAAAATATCTGAAAGTGGGACAATGAATCAGGCGGCTCGTTAGTATTCATGGATCGGAAATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCATTGTCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGGGAAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATTTGAGCTCTCGAAAAATATTTTTCTCCATTCGAACTAAAATACGAAATTCGAGAAGGTGATAAGAGAAATATAAGATATCTGGCTGACTAATTTTTGACGCCTGGATTTCCATTTTTTCGTGTTTTGGATTGAGTGTGACGAATGATGTTCTATTTTTTACTGGAGGGAATACAAGGAACATGGTAATGGAGGAATGAAAAAAGAGGGATGAGGCATAGAAAAATTTTTGGATAATAAGATTTTTGGGAAGGATGAATAATAGATAGAGGGAAAGCTGAAAAAGTGGAGTTGAACAAAATGTATTCTAGGTTTTGATTTTTGGAAAAAGGTATAATTTGTCGGCCAAAAAAATTGA</canonical>
            <polymorphic>TTTGAATCTCAAAATTTAAGGAAAAACGGTTTTTTTTAGTCATCGGAAAAAACTACCGTATTTCCTCTAATGGAACCCCACCCGAACTTTGTACTCAATTATCTCGATTCCTATAAAAGATATCAAAAATGTGTAAACTGATAAAATATTGATCACATTGTCACAAATATTTTATCAGTTAACAAACTTTTGATATCTTACACAGAAATCGATATAATTGAAATACGGTAATTTAAACTTTTAAAAAAATCGAGACATTTTTTAGAAAATTAGAGACTAGAAAAGTCCTAGATCCATCTGCTCATCCCTAAAAAACAGAACAAGAATTGACACCAAAAATGGAAAAGTGGAGAAAAAATATCTGAAAGTGGGACAATGAATCAGGCGGCTCGTTAGTATTCATGGATCGGAAATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAMAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCATTGTCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGGGAAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATTTGAGCTCTCGAAAAATATTTTTCTCCATTCGAACTAAAATACGAAATTCGAGAAGGTGATAAGAGAAATATAAGATATCTGGCTGACTAATTTTTGACGCCTGGATTTCCATTTTTTCGTGTTTTGGATTGAGTGTGACGAATGATGTTCTATTTTTTACTGGAGGGAATACAAGGAACATGGTAATGGAGGAATGAAAAAAGAGGGATGAGGCATAGAAAAATTTTTGGATAATAAGATTTTTGGGAAGGATGAATAATAGATAGAGGGAAAGCTGAAAAAGTGGAGTTGAACAAAATGTATTCTAGGTTTTGATTTTTGGAAAAAGGTATAATTTGTCGGCCAAAAAAATTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGTCTGTGCTCCTTCTTATTT</pcr_primer_p1>
		<pcr_primer_p2>TATTTTTCGAGAGCTCAAATTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCATTGTCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGGGAAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATTTGAGCTCTCGAAAAATA</canonical_amplicon>
		<polymorphic_amplicon>ATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAMAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCATTGTCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGGGAAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATTTGAGCTCTCGAAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15233</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>262332</contig_pos>
        <strand></strand>
        <context>GAAGAAGTAG[A/G]AGATTAGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAG</left_flank>
        <right_flank>AGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGAGATGTTAGTTTGAATCTCAAAATTTAAGGAAAAACGGTTTTTTTTAGTCATCGGAAAAAACTACCGTATTTCCTCTAATGGAACCCCACCCGAACTTTGTACTCAATTATCTCGATTCCTATAAAAGATATCAAAAATGTGTAAACTGATAAAATATTGATCACATTGTCACAAATATTTTATCAGTTAACAAACTTTTGATATCTTACACAGAAATCGATATAATTGAAATACGGTAATTTAAACTTTTAAAAAAATCGAGACATTTTTTAGAAAATTAGAGACTAGAAAAGTCCTAGATCCATCTGCTCATCCCTAAAAAACAGAACAAGAATTGACACCAAAAATGGAAAAGTGGAGAAAAAATATCTGAAAGTGGGACAATGAATCAGGCGGCTCGTTAGTATTCATGGATCGGAAATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCATTGTCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGGGAAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATTTGAGCTCTCGAAAAATATTTTTCTCCATTCGAACTAAAATACGAAATTCGAGAAGGTGATAAGAGAAATATAAGATATCTGGCTGACTAATTTTTGACGCCTGGATTTCCATTTTTTCGTGTTTTGGATTGAGTGTGACGAATGATGTTCTATTTTTTACTGGAGGGAATACAAGGAACATGGTAATGGAGGAATGAAAAAAGAGGGATGAGGCATAGAAAAATTTTTGGATAATAAGATTTTTGGGAAGGATGAATAATAGATAGAGGGAAAGCTGAAAAAGTGGAGTTGAACAAAATGTATTCTAGGTTTTGATTTTTGGAAAAAGGTATAATTTGTCGG</canonical>
            <polymorphic>GGTGAGATGTTAGTTTGAATCTCAAAATTTAAGGAAAAACGGTTTTTTTTAGTCATCGGAAAAAACTACCGTATTTCCTCTAATGGAACCCCACCCGAACTTTGTACTCAATTATCTCGATTCCTATAAAAGATATCAAAAATGTGTAAACTGATAAAATATTGATCACATTGTCACAAATATTTTATCAGTTAACAAACTTTTGATATCTTACACAGAAATCGATATAATTGAAATACGGTAATTTAAACTTTTAAAAAAATCGAGACATTTTTTAGAAAATTAGAGACTAGAAAAGTCCTAGATCCATCTGCTCATCCCTAAAAAACAGAACAAGAATTGACACCAAAAATGGAAAAGTGGAGAAAAAATATCTGAAAGTGGGACAATGAATCAGGCGGCTCGTTAGTATTCATGGATCGGAAATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGRAGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCATTGTCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGGGAAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATTTGAGCTCTCGAAAAATATTTTTCTCCATTCGAACTAAAATACGAAATTCGAGAAGGTGATAAGAGAAATATAAGATATCTGGCTGACTAATTTTTGACGCCTGGATTTCCATTTTTTCGTGTTTTGGATTGAGTGTGACGAATGATGTTCTATTTTTTACTGGAGGGAATACAAGGAACATGGTAATGGAGGAATGAAAAAAGAGGGATGAGGCATAGAAAAATTTTTGGATAATAAGATTTTTGGGAAGGATGAATAATAGATAGAGGGAAAGCTGAAAAAGTGGAGTTGAACAAAATGTATTCTAGGTTTTGATTTTTGGAAAAAGGTATAATTTGTCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGTCTGTGCTCCTTCTTATTT</pcr_primer_p1>
		<pcr_primer_p2>TATTTTTCGAGAGCTCAAATTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCATTGTCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGGGAAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATTTGAGCTCTCGAAAAATA</canonical_amplicon>
		<polymorphic_amplicon>ATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGRAGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCATTGTCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGGGAAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATTTGAGCTCTCGAAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15234</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>262210</contig_pos>
        <strand>+</strand>
        <context>AAAATATCTG[A/G]AAGTGGGACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAGAACAAGAATTGACACCAAAAATGGAAAAGTGGAGAAAAAATATCTG</left_flank>
        <right_flank>AAGTGGGACAATGAATCAGGCGGCTCGTTAGTATTCATGGATCGGAAATT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATAGTATACCGATTTTGGGGCGGAGCCTTGTAAATCGAGTCGAAGGCAGCCTGCGAAATTTTTCAGGTGTCAGTTTTTTTTTAATTCTACAATATAAAGAATCTGGAAAAATAACTTTTGAGGTGAGATGTTAGTTTGAATCTCAAAATTTAAGGAAAAACGGTTTTTTTTAGTCATCGGAAAAAACTACCGTATTTCCTCTAATGGAACCCCACCCGAACTTTGTACTCAATTATCTCGATTCCTATAAAAGATATCAAAAATGTGTAAACTGATAAAATATTGATCACATTGTCACAAATATTTTATCAGTTAACAAACTTTTGATATCTTACACAGAAATCGATATAATTGAAATACGGTAATTTAAACTTTTAAAAAAATCGAGACATTTTTTAGAAAATTAGAGACTAGAAAAGTCCTAGATCCATCTGCTCATCCCTAAAAAACAGAACAAGAATTGACACCAAAAATGGAAAAGTGGAGAAAAAATATCTGAAAGTGGGACAATGAATCAGGCGGCTCGTTAGTATTCATGGATCGGAAATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCATTGTCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGGGAAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATTTGAGCTCTCGAAAAATATTTTTCTCCATTCGAACTAAAATACGAAATTCGAGAAGGTGATAAGAGAAATATAAGATATCTGGCTGACTAATTTTTGACGCCTGGATTTCCATTTTTTCGTGTTTTGGATTGAGTGTGACGAATGATGTTCTATTTTTTACTGGAGGGAATACAAGGAACATGGTAATGGAGGAATGAAAAAAGAGGGATGAGGCATAGAA</canonical>
            <polymorphic>TATAGTATACCGATTTTGGGGCGGAGCCTTGTAAATCGAGTCGAAGGCAGCCTGCGAAATTTTTCAGGTGTCAGTTTTTTTTTAATTCTACAATATAAAGAATCTGGAAAAATAACTTTTGAGGTGAGATGTTAGTTTGAATCTCAAAATTTAAGGAAAAACGGTTTTTTTTAGTCATCGGAAAAAACTACCGTATTTCCTCTAATGGAACCCCACCCGAACTTTGTACTCAATTATCTCGATTCCTATAAAAGATATCAAAAATGTGTAAACTGATAAAATATTGATCACATTGTCACAAATATTTTATCAGTTAACAAACTTTTGATATCTTACACAGAAATCGATATAATTGAAATACGGTAATTTAAACTTTTAAAAAAATCGAGACATTTTTTAGAAAATTAGAGACTAGAAAAGTCCTAGATCCATCTGCTCATCCCTAAAAAACAGAACAAGAATTGACACCAAAAATGGAAAAGTGGAGAAAAAATATCTGRAAGTGGGACAATGAATCAGGCGGCTCGTTAGTATTCATGGATCGGAAATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCATTGTCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGGGAAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATTTGAGCTCTCGAAAAATATTTTTCTCCATTCGAACTAAAATACGAAATTCGAGAAGGTGATAAGAGAAATATAAGATATCTGGCTGACTAATTTTTGACGCCTGGATTTCCATTTTTTCGTGTTTTGGATTGAGTGTGACGAATGATGTTCTATTTTTTACTGGAGGGAATACAAGGAACATGGTAATGGAGGAATGAAAAAAGAGGGATGAGGCATAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>318 314 180 130 46 12</canonical_bands>
                <polymorphic_bands>364 314 180 130 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACAGAACAAGAATTGACAC</pcr_primer_p1>
		<pcr_primer_p2>ATGAGTCAGAAAGCTACAATTTC</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>AAAAACAGAACAAGAATTGACACCAAAAATGGAAAAGTGGAGAAAAAATATCTGAAAGTGGGACAATGAATCAGGCGGCTCGTTAGTATTCATGGATCGGAAATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAACAGAACAAGAATTGACACCAAAAATGGAAAAGTGGAGAAAAAATATCTGRAAGTGGGACAATGAATCAGGCGGCTCGTTAGTATTCATGGATCGGAAATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15242</snp_id>
        <super_contig>c008601274.Contig1</super_contig>
        <contig_pos>46736</contig_pos>
        <strand>+</strand>
        <context>TAGGCTCCGC[C/T]CCTTTATCCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGTGAATTCGACTTTCTATTTTTGGAGGCTCCGCCCCTTTAGGCTCCGC</left_flank>
        <right_flank>CCTTTATCCTCCCCCTTTACATCTACTCGAAGCTCTGCCTCTTTTCTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTGGCCTCCTTCACCTTAATCGGACTTGTCGCCGCCTCCACTGATACTGTAGGTACCGTAATCTTCTCATTTTTCCTGTGCAATCGAATCGATGGAATTGGAGACGTACTCTGATCGTGTACTTGAGCAGTGGGCGGAGCCAAATTTGTGGGCGGGGCCGCCGAGAATCGGGTTACTGTAGTTTGCAGTTCCGTGGATGTGGTTATATTAGCGTCGGAGCTGCGAACAATGTAGGATCGAACCGGGGAGAGTTCCGGGGACCTTGGAAGTGGAATGGGCGGAGCTTGAGAAGGGGGCGGAGCTTGGAAAGGCACTGGTGTCGCGGTTTTGGAGATTTGAATTGGGGGCGGCGTCGCATATTTTGGAATCGGCTTAAAAATTCCATCGGAGGGCTCGGAGGTCACTTTTGCGGGGCTCGGGGAGCGTACAGGGCTGTGGATTACGGTCCAGTGAATTCGACTTTCTATTTTTGGAGGCTCCGCCCCTTTAGGCTCCGCCCCTTTATCCTCCCCCTTTACATCTACTCGAAGCTCTGCCTCTTTTCTCTTCCTATGCTCCTCAAACGCCTCTTTGACTTTCTCCTTACTGATATTTGATGCCCTTCTGGCTTTTCGTTTTGACTCCGCCCCTTTTTTAGGTTCAGCGCCTTTAGGCTCCGCCCCTTTCGCCGCCTCCACTTCCTTAATTAGTGCTGCTAGATCTTCTCCATAATTTAATTTCTCTTTCTCTTTCTTGAGCGCATCTGCCGGATCAATTTGCCAATATCGATTTGTGGGCGGAGCCTGTGGTGGAGGCCATTGACGTGGCACTTTTCCGGTGCGTCGTGGGGAGACTGCAGATCGAACAGAGTCTGGGACTCGGGAAGACGGATTTTCTGGAAATTTTAGGACAAATGGACATGGACAAGGACAAGGACAAGTTTAGGACAAAGCTTTGGGCAAGACTTGGACAAGACAAATTTTGTTTGAAATTAGACAAAAAACCGACAAAAAATCCCG</canonical>
            <polymorphic>GAGTGGCCTCCTTCACCTTAATCGGACTTGTCGCCGCCTCCACTGATACTGTAGGTACCGTAATCTTCTCATTTTTCCTGTGCAATCGAATCGATGGAATTGGAGACGTACTCTGATCGTGTACTTGAGCAGTGGGCGGAGCCAAATTTGTGGGCGGGGCCGCCGAGAATCGGGTTACTGTAGTTTGCAGTTCCGTGGATGTGGTTATATTAGCGTCGGAGCTGCGAACAATGTAGGATCGAACCGGGGAGAGTTCCGGGGACCTTGGAAGTGGAATGGGCGGAGCTTGAGAAGGGGGCGGAGCTTGGAAAGGCACTGGTGTCGCGGTTTTGGAGATTTGAATTGGGGGCGGCGTCGCATATTTTGGAATCGGCTTAAAAATTCCATCGGAGGGCTCGGAGGTCACTTTTGCGGGGCTCGGGGAGCGTACAGGGCTGTGGATTACGGTCCAGTGAATTCGACTTTCTATTTTTGGAGGCTCCGCCCCTTTAGGCTCCGCYCCTTTATCCTCCCCCTTTACATCTACTCGAAGCTCTGCCTCTTTTCTCTTCCTATGCTCCTCAAACGCCTCTTTGACTTTCTCCTTACTGATATTTGATGCCCTTCTGGCTTTTCGTTTTGACTCCGCCCCTTTTTTAGGTTCAGCGCCTTTAGGCTCCGCCCCTTTCGCCGCCTCCACTTCCTTAATTAGTGCTGCTAGATCTTCTCCATAATTTAATTTCTCTTTCTCTTTCTTGAGCGCATCTGCCGGATCAATTTGCCAATATCGATTTGTGGGCGGAGCCTGTGGTGGAGGCCATTGACGTGGCACTTTTCCGGTGCGTCGTGGGGAGACTGCAGATCGAACAGAGTCTGGGACTCGGGAAGACGGATTTTCTGGAAATTTTAGGACAAATGGACATGGACAAGGACAAGGACAAGTTTAGGACAAAGCTTTGGGCAAGACTTGGACAAGACAAATTTTGTTTGAAATTAGACAAAAAACCGACAAAAAATCCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTTTGGAATCGGCTTAAA</pcr_primer_p1>
		<pcr_primer_p2>GCATCAAATATCAGTAAGGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATATTTTGGAATCGGCTTAAAAATTCCATCGGAGGGCTCGGAGGTCACTTTTGCGGGGCTCGGGGAGCGTACAGGGCTGTGGATTACGGTCCAGTGAATTCGACTTTCTATTTTTGGAGGCTCCGCCCCTTTAGGCTCCGCCCCTTTATCCTCCCCCTTTACATCTACTCGAAGCTCTGCCTCTTTTCTCTTCCTATGCTCCTCAAACGCCTCTTTGACTTTCTCCTTACTGATATTTGATGC</canonical_amplicon>
		<polymorphic_amplicon>ATATTTTGGAATCGGCTTAAAAATTCCATCGGAGGGCTCGGAGGTCACTTTTGCGGGGCTCGGGGAGCGTACAGGGCTGTGGATTACGGTCCAGTGAATTCGACTTTCTATTTTTGGAGGCTCCGCCCCTTTAGGCTCCGCYCCTTTATCCTCCCCCTTTACATCTACTCGAAGCTCTGCCTCTTTTCTCTTCCTATGCTCCTCAAACGCCTCTTTGACTTTCTCCTTACTGATATTTGATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15243</snp_id>
        <super_contig>c008601274.Contig1</super_contig>
        <contig_pos>46696</contig_pos>
        <strand>+</strand>
        <context>CAGTGAATTC[C/G]ACTTTCTATT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGCGGGGCTCGGGGAGCGTACAGGGCTGTGGATTACGGTCCAGTGAATTC</left_flank>
        <right_flank>ACTTTCTATTTTTGGAGGCTCCGCCCCTTTAGGCTCCGCCCCTTTATCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATTTTCCGAGAAACCAAAAGTGGGTGGAGCTTGAGTGGGAGTGGCCTCCTTCACCTTAATCGGACTTGTCGCCGCCTCCACTGATACTGTAGGTACCGTAATCTTCTCATTTTTCCTGTGCAATCGAATCGATGGAATTGGAGACGTACTCTGATCGTGTACTTGAGCAGTGGGCGGAGCCAAATTTGTGGGCGGGGCCGCCGAGAATCGGGTTACTGTAGTTTGCAGTTCCGTGGATGTGGTTATATTAGCGTCGGAGCTGCGAACAATGTAGGATCGAACCGGGGAGAGTTCCGGGGACCTTGGAAGTGGAATGGGCGGAGCTTGAGAAGGGGGCGGAGCTTGGAAAGGCACTGGTGTCGCGGTTTTGGAGATTTGAATTGGGGGCGGCGTCGCATATTTTGGAATCGGCTTAAAAATTCCATCGGAGGGCTCGGAGGTCACTTTTGCGGGGCTCGGGGAGCGTACAGGGCTGTGGATTACGGTCCAGTGAATTCGACTTTCTATTTTTGGAGGCTCCGCCCCTTTAGGCTCCGCCCCTTTATCCTCCCCCTTTACATCTACTCGAAGCTCTGCCTCTTTTCTCTTCCTATGCTCCTCAAACGCCTCTTTGACTTTCTCCTTACTGATATTTGATGCCCTTCTGGCTTTTCGTTTTGACTCCGCCCCTTTTTTAGGTTCAGCGCCTTTAGGCTCCGCCCCTTTCGCCGCCTCCACTTCCTTAATTAGTGCTGCTAGATCTTCTCCATAATTTAATTTCTCTTTCTCTTTCTTGAGCGCATCTGCCGGATCAATTTGCCAATATCGATTTGTGGGCGGAGCCTGTGGTGGAGGCCATTGACGTGGCACTTTTCCGGTGCGTCGTGGGGAGACTGCAGATCGAACAGAGTCTGGGACTCGGGAAGACGGATTTTCTGGAAATTTTAGGACAAATGGACATGGACAAGGACAAGGACAAGTTTAGGACAAAGCTTTGGGCAAGACTTGGACAAGACAAA</canonical>
            <polymorphic>TGATTTTCCGAGAAACCAAAAGTGGGTGGAGCTTGAGTGGGAGTGGCCTCCTTCACCTTAATCGGACTTGTCGCCGCCTCCACTGATACTGTAGGTACCGTAATCTTCTCATTTTTCCTGTGCAATCGAATCGATGGAATTGGAGACGTACTCTGATCGTGTACTTGAGCAGTGGGCGGAGCCAAATTTGTGGGCGGGGCCGCCGAGAATCGGGTTACTGTAGTTTGCAGTTCCGTGGATGTGGTTATATTAGCGTCGGAGCTGCGAACAATGTAGGATCGAACCGGGGAGAGTTCCGGGGACCTTGGAAGTGGAATGGGCGGAGCTTGAGAAGGGGGCGGAGCTTGGAAAGGCACTGGTGTCGCGGTTTTGGAGATTTGAATTGGGGGCGGCGTCGCATATTTTGGAATCGGCTTAAAAATTCCATCGGAGGGCTCGGAGGTCACTTTTGCGGGGCTCGGGGAGCGTACAGGGCTGTGGATTACGGTCCAGTGAATTCSACTTTCTATTTTTGGAGGCTCCGCCCCTTTAGGCTCCGCCCCTTTATCCTCCCCCTTTACATCTACTCGAAGCTCTGCCTCTTTTCTCTTCCTATGCTCCTCAAACGCCTCTTTGACTTTCTCCTTACTGATATTTGATGCCCTTCTGGCTTTTCGTTTTGACTCCGCCCCTTTTTTAGGTTCAGCGCCTTTAGGCTCCGCCCCTTTCGCCGCCTCCACTTCCTTAATTAGTGCTGCTAGATCTTCTCCATAATTTAATTTCTCTTTCTCTTTCTTGAGCGCATCTGCCGGATCAATTTGCCAATATCGATTTGTGGGCGGAGCCTGTGGTGGAGGCCATTGACGTGGCACTTTTCCGGTGCGTCGTGGGGAGACTGCAGATCGAACAGAGTCTGGGACTCGGGAAGACGGATTTTCTGGAAATTTTAGGACAAATGGACATGGACAAGGACAAGGACAAGTTTAGGACAAAGCTTTGGGCAAGACTTGGACAAGACAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>240 219 148 127 117 75 69 5</canonical_bands>
                <polymorphic_bands>288 240 148 127 117 75 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATTTTGGAATCGGCTTAAA</pcr_primer_p1>
		<pcr_primer_p2>GCATCAAATATCAGTAAGGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATATTTTGGAATCGGCTTAAAAATTCCATCGGAGGGCTCGGAGGTCACTTTTGCGGGGCTCGGGGAGCGTACAGGGCTGTGGATTACGGTCCAGTGAATTCGACTTTCTATTTTTGGAGGCTCCGCCCCTTTAGGCTCCGCCCCTTTATCCTCCCCCTTTACATCTACTCGAAGCTCTGCCTCTTTTCTCTTCCTATGCTCCTCAAACGCCTCTTTGACTTTCTCCTTACTGATATTTGATGC</canonical_amplicon>
		<polymorphic_amplicon>ATATTTTGGAATCGGCTTAAAAATTCCATCGGAGGGCTCGGAGGTCACTTTTGCGGGGCTCGGGGAGCGTACAGGGCTGTGGATTACGGTCCAGTGAATTCSACTTTCTATTTTTGGAGGCTCCGCCCCTTTAGGCTCCGCCCCTTTATCCTCCCCCTTTACATCTACTCGAAGCTCTGCCTCTTTTCTCTTCCTATGCTCCTCAAACGCCTCTTTGACTTTCTCCTTACTGATATTTGATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15245</snp_id>
        <super_contig>c008601286.Contig1</super_contig>
        <contig_pos>5146</contig_pos>
        <strand>+</strand>
        <context>GTATTCTAAT[A/G]TCTCTTCGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATATATTCTTGGTTGATCTGTAGTTCTTTTTTTGTTTCTGTATTCTAAT</left_flank>
        <right_flank>TCTCTTCGTTTGTATTCTCACTATGTTCTATTCTAATTCAAAAAAAACCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCCACTCTTCCCTATCTCTTTTTTGCTAATTAGATATCCCCGGGCCCTAGAAAATTAAAATATGAAGAAGAATCGGAATCCAATTTATTTTCTTTCCTCTATACAGGCTTTTTTAGCTTATATGCCATATCTTCTTGACCTAGAATATTTCTCTTTTATCTTGGCCAAAGATATTCAAAATCATTTATTCCATCTATACCATATCCAATTGATTGAACACACCTCGTTTTTGTTATTAACGAGAATCGGTTCAACCTATCGGAATCGCATAGGGATTATAATGTTGTTCGATGCGAAACTATGCGTATTCCTCAATTCTATCCCTACTATTTTAACTGTTTCATTTCAGATTCGTATTACGGCTTCTCCTCCAAATGACTTAAAAACAAGAAGAAGAAAATACCAGGACAGCAATGACAATCTGGTGAGCTTTATTAAATTTGGATGAATATATTCTTGGTTGATCTGTAGTTCTTTTTTTGTTTCTGTATTCTAATATCTCTTCGTTTGTATTCTCACTATGTTCTATTCTAATTCAAAAAAAACCAAATTTCTTCTCTAGCAACAGGAACATTTCCTAGTTCTTTGACCCACTTCGCAGTTATTCAAAACTGACCGGTACTTATATTCAATGTTTCCCATCTCACATTCATTGTTTCTTGAAGAAGCGACTTTCGAAATTTCTCGGTCAATGCATTTGAATAGGCGGAACATTGTTAGCATTTCAATGGGTCCTTTTTTTGGAGCCACAATTGTCTGCGCTAATTTTATGCGAGCTTCAAAAAACATCTGGCTGATTGTCTTTAAATAAGAAGGTCCTTGTTTTCTTTTTCTCTATTCTTTTTTATCGAACATTCCAGAATTTTAGTCATGTGCGCCACTGAATATTTCATAACCCAATTTATGGCTCGAAATTCTCGACATTCAGTTGCGCGTCAGTTTCAGTGCTTGCGTACGATGCACACAACTTTCCGCCGAATTTCTTTCCACCAACATCC</canonical>
            <polymorphic>GTTCCACTCTTCCCTATCTCTTTTTTGCTAATTAGATATCCCCGGGCCCTAGAAAATTAAAATATGAAGAAGAATCGGAATCCAATTTATTTTCTTTCCTCTATACAGGCTTTTTTAGCTTATATGCCATATCTTCTTGACCTAGAATATTTCTCTTTTATCTTGGCCAAAGATATTCAAAATCATTTATTCCATCTATACCATATCCAATTGATTGAACACACCTCGTTTTTGTTATTAACGAGAATCGGTTCAACCTATCGGAATCGCATAGGGATTATAATGTTGTTCGATGCGAAACTATGCGTATTCCTCAATTCTATCCCTACTATTTTAACTGTTTCATTTCAGATTCGTATTACGGCTTCTCCTCCAAATGACTTAAAAACAAGAAGAAGAAAATACCAGGACAGCAATGACAATCTGGTGAGCTTTATTAAATTTGGATGAATATATTCTTGGTTGATCTGTAGTTCTTTTTTTGTTTCTGTATTCTAATRTCTCTTCGTTTGTATTCTCACTATGTTCTATTCTAATTCAAAAAAAACCAAATTTCTTCTCTAGCAACAGGAACATTTCCTAGTTCTTTGACCCACTTCGCAGTTATTCAAAACTGACCGGTACTTATATTCAATGTTTCCCATCTCACATTCATTGTTTCTTGAAGAAGCGACTTTCGAAATTTCTCGGTCAATGCATTTGAATAGGCGGAACATTGTTAGCATTTCAATGGGTCCTTTTTTTGGAGCCACAATTGTCTGCGCTAATTTTATGCGAGCTTCAAAAAACATCTGGCTGATTGTCTTTAAATAAGAAGGTCCTTGTTTTCTTTTTCTCTATTCTTTTTTATCGAACATTCCAGAATTTTAGTCATGTGCGCCACTGAATATTTCATAACCCAATTTATGGCTCGAAATTCTCGACATTCAGTTGCGCGTCAGTTTCAGTGCTTGCGTACGATGCACACAACTTTCCGCCGAATTTCTTTCCACCAACATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGAAGAAGAAAATACCAGGAC</pcr_primer_p1>
		<pcr_primer_p2>CATTGAATATAAGTACCGGTCAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAAGAAGAAGAAAATACCAGGACAGCAATGACAATCTGGTGAGCTTTATTAAATTTGGATGAATATATTCTTGGTTGATCTGTAGTTCTTTTTTTGTTTCTGTATTCTAATATCTCTTCGTTTGTATTCTCACTATGTTCTATTCTAATTCAAAAAAAACCAAATTTCTTCTCTAGCAACAGGAACATTTCCTAGTTCTTTGACCCACTTCGCAGTTATTCAAAACTGACCGGTACTTATATTCAATG</canonical_amplicon>
		<polymorphic_amplicon>CAAGAAGAAGAAAATACCAGGACAGCAATGACAATCTGGTGAGCTTTATTAAATTTGGATGAATATATTCTTGGTTGATCTGTAGTTCTTTTTTTGTTTCTGTATTCTAATRTCTCTTCGTTTGTATTCTCACTATGTTCTATTCTAATTCAAAAAAAACCAAATTTCTTCTCTAGCAACAGGAACATTTCCTAGTTCTTTGACCCACTTCGCAGTTATTCAAAACTGACCGGTACTTATATTCAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15248</snp_id>
        <super_contig>c008601286.Contig1</super_contig>
        <contig_pos>9184</contig_pos>
        <strand>+</strand>
        <context>TCGTTGACCT[A/T]GTTTAGTCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACATAATAATCGTTCTTTTTTCTTGAGCCCACATTCTTGATCGTTGACCT</left_flank>
        <right_flank>GTTTAGTCGACTTTCTTCCGTTGAGAAGCAGTAAAAATAGATTTTCTTCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAATTAAAATTCAGATGACATTTCTTAAAATTAACACCGTTTTTTTTTCGATTTCGAATGATATAAAATCATATGATTGATATTTTTAAATGTAAAGTGTGACCTTTGGTTTTCGACTGTCAGCCAGTTTTGACTGACTTACTCGCATTCTTCTATTCGAATTTCAAATGCGACGACGACGGCAAAAAGTCGCCTAGCCGCCCACCTGGATTCACATAATTTATGACCCCACTTTCCTAAAGTATTTCTCATCCATCTTTCTTTCAGTAAAAAGAGATTCATTTCATTCCGGGTAATTCTTCCTGACATTCGTTCGTTTAAAATAACTGTCTACTCTGTTTATTATGGTTGTCAAACGTTTCGAGTGAATGTGAGATGATGTCTACTGCGAGTGCCCCATTCTTCTCTCTTCCGATGTGCGTGTATCTACTACCCAAAACGACAACTCACATAATAATCGTTCTTTTTTCTTGAGCCCACATTCTTGATCGTTGACCTTGTTTAGTCGACTTTCTTCCGTTGAGAAGCAGTAAAAATAGATTTTCTTCAAAACGTCATCGGCAACATTTTTGAAAAAGAAGATTTAATAACTGAAAATTATGTTAGAATAAGAGGAATGAATGAGGTGCCGTGCCGACAACAAATTATTCATAGTAGAAGCAGAAAAGAGACTCATTTTTTTTTCTTTGTTTGTGCTTATTTTCTGGAGAGCACTCATCGTCCCCTTCATCCTTTTTCTGCTTTTTCTATAGTCCCCATTTCAGTTGTTTGACTCGTTGGAACGTAACTGCAACTGAAACATTTTAGACTTTCCTTTTTTTTCGATAAGTTTAATTTTGCAAGATAAAGTGCAATAAATCTTATTTGTTTACTCTTGTCACTTATAGCTCTAAATTTGGTGGCTTCCCTTCTTGCTCTCGCTTCACCGATTCGCTTCCCTACATTATCTTGTTCCAGCTGAAGTTGACTGGAATCGCTTCCTTGCTATTTTTTGTTTTC</canonical>
            <polymorphic>TCAATTAAAATTCAGATGACATTTCTTAAAATTAACACCGTTTTTTTTTCGATTTCGAATGATATAAAATCATATGATTGATATTTTTAAATGTAAAGTGTGACCTTTGGTTTTCGACTGTCAGCCAGTTTTGACTGACTTACTCGCATTCTTCTATTCGAATTTCAAATGCGACGACGACGGCAAAAAGTCGCCTAGCCGCCCACCTGGATTCACATAATTTATGACCCCACTTTCCTAAAGTATTTCTCATCCATCTTTCTTTCAGTAAAAAGAGATTCATTTCATTCCGGGTAATTCTTCCTGACATTCGTTCGTTTAAAATAACTGTCTACTCTGTTTATTATGGTTGTCAAACGTTTCGAGTGAATGTGAGATGATGTCTACTGCGAGTGCCCCATTCTTCTCTCTTCCGATGTGCGTGTATCTACTACCCAAAACGACAACTCACATAATAATCGTTCTTTTTTCTTGAGCCCACATTCTTGATCGTTGACCTWGTTTAGTCGACTTTCTTCCGTTGAGAAGCAGTAAAAATAGATTTTCTTCAAAACGTCATCGGCAACATTTTTGAAAAAGAAGATTTAATAACTGAAAATTATGTTAGAATAAGAGGAATGAATGAGGTGCCGTGCCGACAACAAATTATTCATAGTAGAAGCAGAAAAGAGACTCATTTTTTTTTCTTTGTTTGTGCTTATTTTCTGGAGAGCACTCATCGTCCCCTTCATCCTTTTTCTGCTTTTTCTATAGTCCCCATTTCAGTTGTTTGACTCGTTGGAACGTAACTGCAACTGAAACATTTTAGACTTTCCTTTTTTTTCGATAAGTTTAATTTTGCAAGATAAAGTGCAATAAATCTTATTTGTTTACTCTTGTCACTTATAGCTCTAAATTTGGTGGCTTCCCTTCTTGCTCTCGCTTCACCGATTCGCTTCCCTACATTATCTTGTTCCAGCTGAAGTTGACTGGAATCGCTTCCTTGCTATTTTTTGTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGTTCGTTTAAAATAACTGTCT</pcr_primer_p1>
		<pcr_primer_p2>GATGACGTTTTGAAGAAAATCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCGTTCGTTTAAAATAACTGTCTACTCTGTTTATTATGGTTGTCAAACGTTTCGAGTGAATGTGAGATGATGTCTACTGCGAGTGCCCCATTCTTCTCTCTTCCGATGTGCGTGTATCTACTACCCAAAACGACAACTCACATAATAATCGTTCTTTTTTCTTGAGCCCACATTCTTGATCGTTGACCTTGTTTAGTCGACTTTCTTCCGTTGAGAAGCAGTAAAAATAGATTTTCTTCAAAACGTCATC</canonical_amplicon>
		<polymorphic_amplicon>TCGTTCGTTTAAAATAACTGTCTACTCTGTTTATTATGGTTGTCAAACGTTTCGAGTGAATGTGAGATGATGTCTACTGCGAGTGCCCCATTCTTCTCTCTTCCGATGTGCGTGTATCTACTACCCAAAACGACAACTCACATAATAATCGTTCTTTTTTCTTGAGCCCACATTCTTGATCGTTGACCTWGTTTAGTCGACTTTCTTCCGTTGAGAAGCAGTAAAAATAGATTTTCTTCAAAACGTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15249</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>66543</contig_pos>
        <strand>+</strand>
        <context>GTCGTATGAA[A/G]TTCCGTTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGACTCCGAATCCGTTGACGTCTCCATTGTAGTCGTCAGTGTCGTATGAA</left_flank>
        <right_flank>TTCCGTTGAATCGTCCATATCCTCTTGAGAGTCGTCTTCGATTGTCGCTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTCGGCCATTTTTAGAATTGGGAATGCTGGAGTCTGGTCAGTTGTCAAAGAAGTGTCAATTACACTTCCATCTTGTTCAAAAAGTCCTTCCAGTGCACTTTGATCAAATGGAGTCTCACCTTCGTCTTCTGATTCTGATGGATCGCTTACAGCTGATGGAGCTGGTGTCGTGGTGGCTGGAAATATGGACAAATTCAAAAAAAAAGCTGAAAAGCTAGGAAATTTCAAAAATTCTGCATCTGCTTGTCGCTGGAATTTTAGATGTTGAACCTTTTGATGGATTTGGTCCATCTGTGTTTCCAGATGTCCCCCTTACCCAATCTAGTCGCCGTTGCCATTTCCTTCTCCTTTAAAACCCGTCGATCAGCCACTTCATCCCGTTCAATTGGAAGTGAACTGAATGTGATAACATCAATTGGAGTAGTCGTCGTCGTAGAGTCATCAGAAGACTCCGAATCCGTTGACGTCTCCATTGTAGTCGTCAGTGTCGTATGAAATTCCGTTGAATCGTCCATATCCTCTTGAGAGTCGTCTTCGATTGTCGCTTTTGAGAAGTTGAAAACTCCTCCGTCCAATTGGGTTATTGGCGAGAATACTGACGTCTTCTGGATGGGATTCACTTCAAGAGAAGTGTCGTTTGACGAGATTTCAATCATTTCGGTACTCGTTTCGAAGGTATCCGATCTGGAAGTTTTTAGATTTTCAAATTTCGAAATATCTCAATTTCTGAATTTCCAAATCTCGTTTATTCGAAAACTTCAAAAAATTGTTGCTATTCTGAATTTCTGAATTTCTGAATTTCTAAAACATTGCTCACCCCTCATTCATCAACTCCTCCTGCGGCACAGCCAATGGAAAATCATCTGGCAGCGTGCCAGACGGTGTCGTCTGATCTTTAGAGAGTGGTTTGTCGAACACATCTTCTGAATTCTCGTCTTGTGCGTGGCATTCTGAAAATTTCAAAAAAATTTGGTAAGTTTGGAAATCTAGAATTTTT</canonical>
            <polymorphic>TTCTTCGGCCATTTTTAGAATTGGGAATGCTGGAGTCTGGTCAGTTGTCAAAGAAGTGTCAATTACACTTCCATCTTGTTCAAAAAGTCCTTCCAGTGCACTTTGATCAAATGGAGTCTCACCTTCGTCTTCTGATTCTGATGGATCGCTTACAGCTGATGGAGCTGGTGTCGTGGTGGCTGGAAATATGGACAAATTCAAAAAAAAAGCTGAAAAGCTAGGAAATTTCAAAAATTCTGCATCTGCTTGTCGCTGGAATTTTAGATGTTGAACCTTTTGATGGATTTGGTCCATCTGTGTTTCCAGATGTCCCCCTTACCCAATCTAGTCGCCGTTGCCATTTCCTTCTCCTTTAAAACCCGTCGATCAGCCACTTCATCCCGTTCAATTGGAAGTGAACTGAATGTGATAACATCAATTGGAGTAGTCGTCGTCGTAGAGTCATCAGAAGACTCCGAATCCGTTGACGTCTCCATTGTAGTCGTCAGTGTCGTATGAARTTCCGTTGAATCGTCCATATCCTCTTGAGAGTCGTCTTCGATTGTCGCTTTTGAGAAGTTGAAAACTCCTCCGTCCAATTGGGTTATTGGCGAGAATACTGACGTCTTCTGGATGGGATTCACTTCAAGAGAAGTGTCGTTTGACGAGATTTCAATCATTTCGGTACTCGTTTCGAAGGTATCCGATCTGGAAGTTTTTAGATTTTCAAATTTCGAAATATCTCAATTTCTGAATTTCCAAATCTCGTTTATTCGAAAACTTCAAAAAATTGTTGCTATTCTGAATTTCTGAATTTCTGAATTTCTAAAACATTGCTCACCCCTCATTCATCAACTCCTCCTGCGGCACAGCCAATGGAAAATCATCTGGCAGCGTGCCAGACGGTGTCGTCTGATCTTTAGAGAGTGGTTTGTCGAACACATCTTCTGAATTCTCGTCTTGTGCGTGGCATTCTGAAAATTTCAAAAAAATTTGGTAAGTTTGGAAATCTAGAATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>242 210 194 130 51 29 29 24 24 24 11 9 8 8 7</canonical_bands>
                <polymorphic_bands>452 194 130 51 29 29 24 24 24 11 9 8 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>134 132 130 130 82 78 42 35 30 29 29 24 24 18 16 16 11 9 8 8 8 7</canonical_bands>
                <polymorphic_bands>160 134 132 130 130 42 35 30 29 29 24 24 18 16 16 11 9 8 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAACATCAATTGGAGTAGTCGT</pcr_primer_p1>
		<pcr_primer_p2>AATGATTGAAATCTCGTCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATAACATCAATTGGAGTAGTCGTCGTCGTAGAGTCATCAGAAGACTCCGAATCCGTTGACGTCTCCATTGTAGTCGTCAGTGTCGTATGAAATTCCGTTGAATCGTCCATATCCTCTTGAGAGTCGTCTTCGATTGTCGCTTTTGAGAAGTTGAAAACTCCTCCGTCCAATTGGGTTATTGGCGAGAATACTGACGTCTTCTGGATGGGATTCACTTCAAGAGAAGTGTCGTTTGACGAGATTTCAATCATT</canonical_amplicon>
		<polymorphic_amplicon>ATAACATCAATTGGAGTAGTCGTCGTCGTAGAGTCATCAGAAGACTCCGAATCCGTTGACGTCTCCATTGTAGTCGTCAGTGTCGTATGAARTTCCGTTGAATCGTCCATATCCTCTTGAGAGTCGTCTTCGATTGTCGCTTTTGAGAAGTTGAAAACTCCTCCGTCCAATTGGGTTATTGGCGAGAATACTGACGTCTTCTGGATGGGATTCACTTCAAGAGAAGTGTCGTTTGACGAGATTTCAATCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15250</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>68916</contig_pos>
        <strand>+</strand>
        <context>TCTGACTTTW[A/T]AAAATTCATA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTACAGTACTGTGCTTGAAAATTATTTTTCAAAAAGATAATCTGACTTTA</left_flank>
        <right_flank>AAAATTCATAGTTCATGTTTAGAAATGAGGCAAATTAGAAGGATTAGAGG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAATACAGGTTTTACGGTAATAGAACGTTTAGAAAATCGACTACTTGTTGAAAGCGGTACTGTACTAAAAATTGGTCCAAAAACACCTTCCAAATCAGGAATTTTGGAAAAACTGACTACTAGCCAAAAGAGGTATACTGTACCTTAGTAGACTGGCAAAATTTCAAAAGCAATCCCATAAAAATTCGAAAAATCCGCTCATGCTCGGGTAGGAAAAGGTGGCAAACTGTCTCTTCAGCCGAGTCAAAACAAAAGGCGTGCGCGCAAAAGTTGTTGCGTTGTTTCTCTGTGCTTGTATATGCTTATTATTTACACATTTTGCTGACTGCACATACACCTCTTGAAACGGATTATCCGGTGGAAGAGAGAGGGCCGAGAAGTGACATTATGCACAGAACTTGAGGCAGAGAGAGGGGAGAGACGCAGAGAAACGAATTTGAATAGAACTGTACAGTACTGTGCTTGAAAATTATTTTTCAAAAAGATAATCTGACTTTATAAAATTCATAGTTCATGTTTAGAAATGAGGCAAATTAGAAGGATTAGAGGTAGACACATGGAACTAGACACATAAGCCGCTGGCCAATTTCGACCCCATGATAAATAGCGTAATATCTTTCCGATTTGCCAGAAAACTTCAGAGTATACTAAACAAATCAAGAGCTTCATTTTTGTAGTTGACAACATTTTTGTGAAATCTTATCTAGAAAAGATGCGCCAGATTGAAGTGGAAAGGTTCGCACAAAATTCAGGCTGGTCAAGTCGTGCCCATCACTCTCTGGTGTATAACTCAGCTCAAAATTGGAATTTTTGTGCAGAACAAAAAGTAAAATGTAGAGCTTAACAAGATCTACAAAATAATATTAAATACAACAATGCACTAACTACGAAAATCTGGATAAACAGACAAACAGGGCTGGAAGCTTAAATCATTGACATTTCGATATACCAAACTCTACTCTTTCGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA</canonical>
            <polymorphic>CTAATACAGGTTTTACGGTAATAGAACGTTTAGAAAATCGACTACTTGTTGAAAGCGGTACTGTACTAAAAATTGGTCCAAAAACACCTTCCAAATCAGGAATTTTGGAAAAACTGACTACTAGCCAAAAGAGGTATACTGTACCTTAGTAGACTGGCAAAATTTCAAAAGCAATCCCATAAAAATTCGAAAAATCCGCTCATGCTCGGGTAGGAAAAGGTGGCAAACTGTCTCTTCAGCCGAGTCAAAACAAAAGGCGTGCGCGCAAAAGTTGTTGCGTTGTTTCTCTGTGCTTGTATATGCTTATTATTTACACATTTTGCTGACTGCACATACACCTCTTGAAACGGATTATCCGGTGGAAGAGAGAGGGCCGAGAAGTGACATTATGCACAGAACTTGAGGCAGAGAGAGGGGAGAGACGCAGAGAAACGAATTTGAATAGAACTGTACAGTACTGTGCTTGAAAATTATTTTTCAAAAAGATAATCTGACTTTAWAAAATTCATAGTTCATGTTTAGAAATGAGGCAAATTAGAAGGATTAGAGGTAGACACATGGAACTAGACACATAAGCCGCTGGCCAATTTCGACCCCATGATAAATAGCGTAATATCTTTCCGATTTGCCAGAAAACTTCAGAGTATACTAAACAAATCAAGAGCTTCATTTTTGTAGTTGACAACATTTTTGTGAAATCTTATCTAGAAAAGATGCGCCAGATTGAAGTGGAAAGGTTCGCACAAAATTCAGGCTGGTCAAGTCGTGCCCATCACTCTCTGGTGTATAACTCAGCTCAAAATTGGAATTTTTGTGCAGAACAAAAAGTAAAATGTAGAGCTTAACAAGATCTACAAAATAATATTAAATACAACAATGCACTAACTACGAAAATCTGGATAAACAGACAAACAGGGCTGGAAGCTTAAATCATTGACATTTCGATATACCAAACTCTACTCTTTCGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGACTGCACATACACCTCTT</pcr_primer_p1>
		<pcr_primer_p2>GTGTCTAGTTCCATGTGTCTACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTGACTGCACATACACCTCTTGAAACGGATTATCCGGTGGAAGAGAGAGGGCCGAGAAGTGACATTATGCACAGAACTTGAGGCAGAGAGAGGGGAGAGACGCAGAGAAACGAATTTGAATAGAACTGTACAGTACTGTGCTTGAAAATTATTTTTCAAAAAGATAATCTGACTTTATAAAATTCATAGTTCATGTTTAGAAATGAGGCAAATTAGAAGGATTAGAGGTAGACACATGGAACTAGACAC</canonical_amplicon>
		<polymorphic_amplicon>CTGACTGCACATACACCTCTTGAAACGGATTATCCGGTGGAAGAGAGAGGGCCGAGAAGTGACATTATGCACAGAACTTGAGGCAGAGAGAGGGGAGAGACGCAGAGAAACGAATTTGAATAGAACTGTACAGTACTGTGCTTGAAAATTATTTTTCAAAAAGATAATCTGACTTTAWAAAATTCATAGTTCATGTTTAGAAATGAGGCAAATTAGAAGGATTAGAGGTAGACACATGGAACTAGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15251</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>68915</contig_pos>
        <strand>+</strand>
        <context>ATCTGACTTT[A/T]WAAAATTCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTACAGTACTGTGCTTGAAAATTATTTTTCAAAAAGATAATCTGACTTT</left_flank>
        <right_flank>TAAAATTCATAGTTCATGTTTAGAAATGAGGCAAATTAGAAGGATTAGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTAATACAGGTTTTACGGTAATAGAACGTTTAGAAAATCGACTACTTGTTGAAAGCGGTACTGTACTAAAAATTGGTCCAAAAACACCTTCCAAATCAGGAATTTTGGAAAAACTGACTACTAGCCAAAAGAGGTATACTGTACCTTAGTAGACTGGCAAAATTTCAAAAGCAATCCCATAAAAATTCGAAAAATCCGCTCATGCTCGGGTAGGAAAAGGTGGCAAACTGTCTCTTCAGCCGAGTCAAAACAAAAGGCGTGCGCGCAAAAGTTGTTGCGTTGTTTCTCTGTGCTTGTATATGCTTATTATTTACACATTTTGCTGACTGCACATACACCTCTTGAAACGGATTATCCGGTGGAAGAGAGAGGGCCGAGAAGTGACATTATGCACAGAACTTGAGGCAGAGAGAGGGGAGAGACGCAGAGAAACGAATTTGAATAGAACTGTACAGTACTGTGCTTGAAAATTATTTTTCAAAAAGATAATCTGACTTTATAAAATTCATAGTTCATGTTTAGAAATGAGGCAAATTAGAAGGATTAGAGGTAGACACATGGAACTAGACACATAAGCCGCTGGCCAATTTCGACCCCATGATAAATAGCGTAATATCTTTCCGATTTGCCAGAAAACTTCAGAGTATACTAAACAAATCAAGAGCTTCATTTTTGTAGTTGACAACATTTTTGTGAAATCTTATCTAGAAAAGATGCGCCAGATTGAAGTGGAAAGGTTCGCACAAAATTCAGGCTGGTCAAGTCGTGCCCATCACTCTCTGGTGTATAACTCAGCTCAAAATTGGAATTTTTGTGCAGAACAAAAAGTAAAATGTAGAGCTTAACAAGATCTACAAAATAATATTAAATACAACAATGCACTAACTACGAAAATCTGGATAAACAGACAAACAGGGCTGGAAGCTTAAATCATTGACATTTCGATATACCAAACTCTACTCTTTCGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG</canonical>
            <polymorphic>TCTAATACAGGTTTTACGGTAATAGAACGTTTAGAAAATCGACTACTTGTTGAAAGCGGTACTGTACTAAAAATTGGTCCAAAAACACCTTCCAAATCAGGAATTTTGGAAAAACTGACTACTAGCCAAAAGAGGTATACTGTACCTTAGTAGACTGGCAAAATTTCAAAAGCAATCCCATAAAAATTCGAAAAATCCGCTCATGCTCGGGTAGGAAAAGGTGGCAAACTGTCTCTTCAGCCGAGTCAAAACAAAAGGCGTGCGCGCAAAAGTTGTTGCGTTGTTTCTCTGTGCTTGTATATGCTTATTATTTACACATTTTGCTGACTGCACATACACCTCTTGAAACGGATTATCCGGTGGAAGAGAGAGGGCCGAGAAGTGACATTATGCACAGAACTTGAGGCAGAGAGAGGGGAGAGACGCAGAGAAACGAATTTGAATAGAACTGTACAGTACTGTGCTTGAAAATTATTTTTCAAAAAGATAATCTGACTTTWTAAAATTCATAGTTCATGTTTAGAAATGAGGCAAATTAGAAGGATTAGAGGTAGACACATGGAACTAGACACATAAGCCGCTGGCCAATTTCGACCCCATGATAAATAGCGTAATATCTTTCCGATTTGCCAGAAAACTTCAGAGTATACTAAACAAATCAAGAGCTTCATTTTTGTAGTTGACAACATTTTTGTGAAATCTTATCTAGAAAAGATGCGCCAGATTGAAGTGGAAAGGTTCGCACAAAATTCAGGCTGGTCAAGTCGTGCCCATCACTCTCTGGTGTATAACTCAGCTCAAAATTGGAATTTTTGTGCAGAACAAAAAGTAAAATGTAGAGCTTAACAAGATCTACAAAATAATATTAAATACAACAATGCACTAACTACGAAAATCTGGATAAACAGACAAACAGGGCTGGAAGCTTAAATCATTGACATTTCGATATACCAAACTCTACTCTTTCGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGACTGCACATACACCTCTT</pcr_primer_p1>
		<pcr_primer_p2>GTGTCTAGTTCCATGTGTCTACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTGACTGCACATACACCTCTTGAAACGGATTATCCGGTGGAAGAGAGAGGGCCGAGAAGTGACATTATGCACAGAACTTGAGGCAGAGAGAGGGGAGAGACGCAGAGAAACGAATTTGAATAGAACTGTACAGTACTGTGCTTGAAAATTATTTTTCAAAAAGATAATCTGACTTTATAAAATTCATAGTTCATGTTTAGAAATGAGGCAAATTAGAAGGATTAGAGGTAGACACATGGAACTAGACAC</canonical_amplicon>
		<polymorphic_amplicon>CTGACTGCACATACACCTCTTGAAACGGATTATCCGGTGGAAGAGAGAGGGCCGAGAAGTGACATTATGCACAGAACTTGAGGCAGAGAGAGGGGAGAGACGCAGAGAAACGAATTTGAATAGAACTGTACAGTACTGTGCTTGAAAATTATTTTTCAAAAAGATAATCTGACTTTWTAAAATTCATAGTTCATGTTTAGAAATGAGGCAAATTAGAAGGATTAGAGGTAGACACATGGAACTAGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15252</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>69155</contig_pos>
        <strand>+</strand>
        <context>gtgGAAAGGT[C/T]CGCACAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGTGAAATCTTATCTAGAAAAGATGCGCCAGATTGAAGTGGAAAGGT</left_flank>
        <right_flank>CGCACAAAATTCAGGCTGGTCAAGTCGTGCCCATCACTCTCTGGTGTATA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGAGTCAAAACAAAAGGCGTGCGCGCAAAAGTTGTTGCGTTGTTTCTCTGTGCTTGTATATGCTTATTATTTACACATTTTGCTGACTGCACATACACCTCTTGAAACGGATTATCCGGTGGAAGAGAGAGGGCCGAGAAGTGACATTATGCACAGAACTTGAGGCAGAGAGAGGGGAGAGACGCAGAGAAACGAATTTGAATAGAACTGTACAGTACTGTGCTTGAAAATTATTTTTCAAAAAGATAATCTGACTTTATAAAATTCATAGTTCATGTTTAGAAATGAGGCAAATTAGAAGGATTAGAGGTAGACACATGGAACTAGACACATAAGCCGCTGGCCAATTTCGACCCCATGATAAATAGCGTAATATCTTTCCGATTTGCCAGAAAACTTCAGAGTATACTAAACAAATCAAGAGCTTCATTTTTGTAGTTGACAACATTTTTGTGAAATCTTATCTAGAAAAGATGCGCCAGATTGAAGTGGAAAGGTTCGCACAAAATTCAGGCTGGTCAAGTCGTGCCCATCACTCTCTGGTGTATAACTCAGCTCAAAATTGGAATTTTTGTGCAGAACAAAAAGTAAAATGTAGAGCTTAACAAGATCTACAAAATAATATTAAATACAACAATGCACTAACTACGAAAATCTGGATAAACAGACAAACAGGGCTGGAAGCTTAAATCATTGACATTTCGATATACCAAACTCTACTCTTTCGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGTGAAGAGGCACAGAGGAAACTGATTTCAATTTTCGAATAAAAGGAACTGTATAGAAATAATGAACAAGTGGTGATAAAAGTTAAAGAGGGTGTGAAAATGGGCGGAGGAATTGAAAGGGGGAATGAAAGAAGAAAAGAGAACAATGACTTTAGAGGGAAAAACTGGAAGTTCTTGTAGTAAAAT</canonical>
            <polymorphic>CCGAGTCAAAACAAAAGGCGTGCGCGCAAAAGTTGTTGCGTTGTTTCTCTGTGCTTGTATATGCTTATTATTTACACATTTTGCTGACTGCACATACACCTCTTGAAACGGATTATCCGGTGGAAGAGAGAGGGCCGAGAAGTGACATTATGCACAGAACTTGAGGCAGAGAGAGGGGAGAGACGCAGAGAAACGAATTTGAATAGAACTGTACAGTACTGTGCTTGAAAATTATTTTTCAAAAAGATAATCTGACTTTATAAAATTCATAGTTCATGTTTAGAAATGAGGCAAATTAGAAGGATTAGAGGTAGACACATGGAACTAGACACATAAGCCGCTGGCCAATTTCGACCCCATGATAAATAGCGTAATATCTTTCCGATTTGCCAGAAAACTTCAGAGTATACTAAACAAATCAAGAGCTTCATTTTTGTAGTTGACAACATTTTTGTGAAATCTTATCTAGAAAAGATGCGCCAGATTGAAGTGGAAAGGTYCGCACAAAATTCAGGCTGGTCAAGTCGTGCCCATCACTCTCTGGTGTATAACTCAGCTCAAAATTGGAATTTTTGTGCAGAACAAAAAGTAAAATGTAGAGCTTAACAAGATCTACAAAATAATATTAAATACAACAATGCACTAACTACGAAAATCTGGATAAACAGACAAACAGGGCTGGAAGCTTAAATCATTGACATTTCGATATACCAAACTCTACTCTTTCGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGTGAAGAGGCACAGAGGAAACTGATTTCAATTTTCGAATAAAAGGAACTGTATAGAAATAATGAACAAGTGGTGATAAAAGTTAAAGAGGGTGTGAAAATGGGCGGAGGAATTGAAAGGGGGAATGAAAGAAGAAAAGAGAACAATGACTTTAGAGGGAAAAACTGGAAGTTCTTGTAGTAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACACATGGAACTAGACACATAAG</pcr_primer_p1>
		<pcr_primer_p2>TCCAGATTTTCGTAGTTAGTGC</pcr_primer_p2>
		<pcr_amplicon_size>348</pcr_amplicon_size>
		<canonical_amplicon>GACACATGGAACTAGACACATAAGCCGCTGGCCAATTTCGACCCCATGATAAATAGCGTAATATCTTTCCGATTTGCCAGAAAACTTCAGAGTATACTAAACAAATCAAGAGCTTCATTTTTGTAGTTGACAACATTTTTGTGAAATCTTATCTAGAAAAGATGCGCCAGATTGAAGTGGAAAGGTTCGCACAAAATTCAGGCTGGTCAAGTCGTGCCCATCACTCTCTGGTGTATAACTCAGCTCAAAATTGGAATTTTTGTGCAGAACAAAAAGTAAAATGTAGAGCTTAACAAGATCTACAAAATAATATTAAATACAACAATGCACTAACTACGAAAATCTGGA</canonical_amplicon>
		<polymorphic_amplicon>GACACATGGAACTAGACACATAAGCCGCTGGCCAATTTCGACCCCATGATAAATAGCGTAATATCTTTCCGATTTGCCAGAAAACTTCAGAGTATACTAAACAAATCAAGAGCTTCATTTTTGTAGTTGACAACATTTTTGTGAAATCTTATCTAGAAAAGATGCGCCAGATTGAAGTGGAAAGGTYCGCACAAAATTCAGGCTGGTCAAGTCGTGCCCATCACTCTCTGGTGTATAACTCAGCTCAAAATTGGAATTTTTGTGCAGAACAAAAAGTAAAATGTAGAGCTTAACAAGATCTACAAAATAATATTAAATACAACAATGCACTAACTACGAAAATCTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15253</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>246328</contig_pos>
        <strand>+</strand>
        <context>GGAACGCAGG[C/G]TAGACACATC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGAAAGTGATGTTCTTGAGAGAAGAGTCCAGATGCCCGATGGAACGCAGG</left_flank>
        <right_flank>TAGACACATCTCTCATGAATTTCTAGCGAAAATCTCAAAACTCTCTTCCT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCTAAACAGTGGCTTCTTCTTGAATACCACTCTCCTTCTTGACTTGCAGGCCAGACTTTCTATCCAGATTATTGGCTAGATATCGCTGAGCTCATTTGGGAGAGTTTAGGAGGTTACAGTATCTCCAGGATACTATATCATACAGTAATCCTATGATTCACACCCTCGCTATTTGTCATCAAATTGACTGCACAGCGACTCAACACCAACTGAGATACGCAGGCATATGATAGGTGACAAAAAGGGCCGCGGTCGTGGCAATCGTATCGAATCGATCGATCGATTATCAATGTGTCACTGCCGGTCTCTTTAGAGGCTTTCTTCAAAACGTTCCTTTCGATTTCATCTTGACAGATGGGCATCATTATTGCATTGGGTGTTCTATATAGTGGCAACTGACACATTCCTGACGCTTTTTTTTGTTTCGCTGGGATGCACTGGAAGAGATGAAAGTGATGTTCTTGAGAGAAGAGTCCAGATGCCCGATGGAACGCAGGGTAGACACATCTCTCATGAATTTCTAGCGAAAATCTCAAAACTCTCTTCCTGAATCTTCTATCTTCGAATTTTCTAGTCGTGTAGAAAGGGAGATATCAGGAAATGAAATTTTTGAACTAGGAAGTCGGAAGTCGGAAGTAAACTTCCAGATTTTCAGAGCATAATTTATGGTATTGGCGCTAATTTTGAATATTTTTTGATTTTTCTGGTCAAAAATGAACAAATTTCGCAACATTTGTTGCAAAAATTCTATGGCGGAATGAGAGTCTGAAGCCGGAAGATTTCCTGATTTTCCGGAAGTCGGAAGTAAAATTTCGAACTAGGAAGTCGGTTTCGAACTAGGAACTCATGGATGGCTAGAGTTCGCGTTCTCCAGTAGAGTCTACAGTATCCCACAGTAATCCTAATCGGTTTCTTTTTAAAATTCTGGAAGTTTTCCCTCTATAAATTGTTGTAACAAATTCGGCGATTTTCAGTTTTCTAACGAGAAGTTTCTAGAA</canonical>
            <polymorphic>TCTCTAAACAGTGGCTTCTTCTTGAATACCACTCTCCTTCTTGACTTGCAGGCCAGACTTTCTATCCAGATTATTGGCTAGATATCGCTGAGCTCATTTGGGAGAGTTTAGGAGGTTACAGTATCTCCAGGATACTATATCATACAGTAATCCTATGATTCACACCCTCGCTATTTGTCATCAAATTGACTGCACAGCGACTCAACACCAACTGAGATACGCAGGCATATGATAGGTGACAAAAAGGGCCGCGGTCGTGGCAATCGTATCGAATCGATCGATCGATTATCAATGTGTCACTGCCGGTCTCTTTAGAGGCTTTCTTCAAAACGTTCCTTTCGATTTCATCTTGACAGATGGGCATCATTATTGCATTGGGTGTTCTATATAGTGGCAACTGACACATTCCTGACGCTTTTTTTTGTTTCGCTGGGATGCACTGGAAGAGATGAAAGTGATGTTCTTGAGAGAAGAGTCCAGATGCCCGATGGAACGCAGGSTAGACACATCTCTCATGAATTTCTAGCGAAAATCTCAAAACTCTCTTCCTGAATCTTCTATCTTCGAATTTTCTAGTCGTGTAGAAAGGGAGATATCAGGAAATGAAATTTTTGAACTAGGAAGTCGGAAGTCGGAAGTAAACTTCCAGATTTTCAGAGCATAATTTATGGTATTGGCGCTAATTTTGAATATTTTTTGATTTTTCTGGTCAAAAATGAACAAATTTCGCAACATTTGTTGCAAAAATTCTATGGCGGAATGAGAGTCTGAAGCCGGAAGATTTCCTGATTTTCCGGAAGTCGGAAGTAAAATTTCGAACTAGGAAGTCGGTTTCGAACTAGGAACTCATGGATGGCTAGAGTTCGCGTTCTCCAGTAGAGTCTACAGTATCCCACAGTAATCCTAATCGGTTTCTTTTTAAAATTCTGGAAGTTTTCCCTCTATAAATTGTTGTAACAAATTCGGCGATTTTCAGTTTTCTAACGAGAAGTTTCTAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 381 118</canonical_bands>
                <polymorphic_bands>882 118</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 243 138 117</canonical_bands>
                <polymorphic_bands>640 243 117</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTCTCTTTAGAGGCTTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>ATTCAGGAAGAGAGTTTTGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTCTCTTTAGAGGCTTTCTTCAAAACGTTCCTTTCGATTTCATCTTGACAGATGGGCATCATTATTGCATTGGGTGTTCTATATAGTGGCAACTGACACATTCCTGACGCTTTTTTTTGTTTCGCTGGGATGCACTGGAAGAGATGAAAGTGATGTTCTTGAGAGAAGAGTCCAGATGCCCGATGGAACGCAGGGTAGACACATCTCTCATGAATTTCTAGCGAAAATCTCAAAACTCTCTTCCTGAAT</canonical_amplicon>
		<polymorphic_amplicon>GGTCTCTTTAGAGGCTTTCTTCAAAACGTTCCTTTCGATTTCATCTTGACAGATGGGCATCATTATTGCATTGGGTGTTCTATATAGTGGCAACTGACACATTCCTGACGCTTTTTTTTGTTTCGCTGGGATGCACTGGAAGAGATGAAAGTGATGTTCTTGAGAGAAGAGTCCAGATGCCCGATGGAACGCAGGSTAGACACATCTCTCATGAATTTCTAGCGAAAATCTCAAAACTCTCTTCCTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15254</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>251052</contig_pos>
        <strand>+</strand>
        <context>GTGGAYCTAT[A/G]GACACTTCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGAGGGACCAGCGACGCGGACAAGAGGACGCTCGAGAGGTGGATCTAT</left_flank>
        <right_flank>GACACTTCACCAGTCTTCAGACAAGCTCCTCGCCGATCCAATTTCCGAGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTCATGTTGATCCTCCAAGAGCGTCCCGATCAGATTGGACCGAGACGAAGCCATCAACAATCGCTGCAGCTGCTCCACCAGCTGCTCAGCCATCAAGATCGGTGCCAGGCCCAATCGGTCCGTTTGGAAGATCTGCTCCACCTCCACCAGCTGCTCCACCGATCCCTCCCCAAATTCGTGTCGATCCTCCAAGAGAGACGAAGCCGTCTACGATTGCTCAGCCTTCACAATCTGCTGCTCCACCGGCTCCAATTCCACCACCAGCTGCTCAACAATCAAGATCCGTCCCAGTCCCGCCAGCTGCTGCTTCATCCAGCCCAGCACCCACCCGAATCGATCTATCTGAAAGGACTTTGGCTAGGCTAGCACAAATTGCTCCATCTTCCCAAGCTGCTCAGCCAGAATCCGCTCCTTGCCAACCACGACGCCAAATCACAAGATCCGATTTCGAGGGACCAGCGACGCGGACAAGAGGACGCTCGAGAGGTGGATCTATGGACACTTCACCAGTCTTCAGACAAGCTCCTCGCCGATCCAATTTCCGAGCCAGATCCACTGATGGAGACGATGCTCGTACACCTGCGCCAAGAGCAAAGTCAAGGGATCCAGAAGCAACTCCCCGAAGATCTGCCGCATTCAACCAAGCTGATAATGATGTTCTAGGGGCAGCTACTCCTCTAACTGCTCGTGAACAATCCACAGATGGATCTGGCCAACCGGTGGTGAAAAGAGGACGTGGTCGACCAAGGAGGGATCAGTCCGTTAATAGACCGGATGAGGGACCAAGGGGTCAAACTCCAGAGCCAGGACGACCCGAAAAACCGGTTGGTCGGCCACGCGGCGGCTCTTCCAGGGATCAATCTAGGGAACCCGAGGGACCATCAGGACCGACCAACGGCCGACCGCGCGTCCCATCCAGGGAACCGTCAGTCGATGCTCAGCCTCCTCGTAGAGGTCCAGGACGTCCAAGAACCATCTCTCGGGAACCTTCCGAAGA</canonical>
            <polymorphic>AAGTTCATGTTGATCCTCCAAGAGCGTCCCGATCAGATTGGACCGAGACGAAGCCATCAACAATCGCTGCAGCTGCTCCACCAGCTGCTCAGCCATCAAGATCGGTGCCAGGCCCAATCGGTCCGTTTGGAAGATCTGCTCCACCTCCACCAGCTGCTCCACCGATCCCTCCCCAAATTCGTGTCGATCCTCCAAGAGAGACGAAGCCGTCTACGATTGCTCAGCCTTCACAATCTGCTGCTCCACCGGCTCCAATTCCACCACCAGCTGCTCAACAATCAAGATCCGTCCCAGTCCCGCCAGCTGCTGCTTCATCCAGCCCAGCACCCACCCGAATCGATCTATCTGAAAGGACTTTGGCTAGGCTAGCACAAATTGCTCCATCTTCCCAAGCTGCTCAGCCAGAATCCGCTCCTTGCCAACCACGACGCCAAATCACAAGATCCGATTTCGAGGGACCAGCGACGCGGACAAGAGGACGCTCGAGAGGTGGATCTATRGACACTTCACCAGTCTTCAGACAAGCTCCTCGCCGATCCAATTTCCGAGCCAGATCCACTGATGGAGACGATGCTCGTACACCTGCGCCAAGAGCAAAGTCAAGGGATCCAGAAGCAACTCCCCGAAGATCTGCCGCATTCAACCAAGCTGATAATGATGTTCTAGGGGCAGCTACTCCTCTAACTGCTCGTGAACAATCCACAGATGGATCTGGCCAACCGGTGGTGAAAAGAGGACGTGGTCGACCAAGGAGGGATCAGTCCGTTAATAGACCGGATGAGGGACCAAGGGGTCAAACTCCAGAGCCAGGACGACCCGAAAAACCGGTTGGTCGGCCACGCGGCGGCTCTTCCAGGGATCAATCTAGGGAACCCGAGGGACCATCAGGACCGACCAACGGCCGACCGCGCGTCCCATCCAGGGAACCGTCAGTCGATGCTCAGCCTCCTCGTAGAGGTCCAGGACGTCCAAGAACCATCTCTCGGGAACCTTCCGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGCACAAATTGCTCCATCT</pcr_primer_p1>
		<pcr_primer_p2>CTTCTGGATCCCTTGACTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAGCACAAATTGCTCCATCTTCCCAAGCTGCTCAGCCAGAATCCGCTCCTTGCCAACCACGACGCCAAATCACAAGATCCGATTTCGAGGGACCAGCGACGCGGACAAGAGGACGCTCGAGAGGTGGATCTATGGACACTTCACCAGTCTTCAGACAAGCTCCTCGCCGATCCAATTTCCGAGCCAGATCCACTGATGGAGACGATGCTCGTACACCTGCGCCAAGAGCAAAGTCAAGGGATCCAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TAGCACAAATTGCTCCATCTTCCCAAGCTGCTCAGCCAGAATCCGCTCCTTGCCAACCACGACGCCAAATCACAAGATCCGATTTCGAGGGACCAGCGACGCGGACAAGAGGACGCTCGAGAGGTGGATCTATRGACACTTCACCAGTCTTCAGACAAGCTCCTCGCCGATCCAATTTCCGAGCCAGATCCACTGATGGAGACGATGCTCGTACACCTGCGCCAAGAGCAAAGTCAAGGGATCCAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15255</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>251047</contig_pos>
        <strand>+</strand>
        <context>GAGAGGTGGA[C/T]CTATRGACAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGATTTCGAGGGACCAGCGACGCGGACAAGAGGACGCTCGAGAGGTGGA</left_flank>
        <right_flank>CTATGGACACTTCACCAGTCTTCAGACAAGCTCCTCGCCGATCCAATTTC</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTCAAGTTCATGTTGATCCTCCAAGAGCGTCCCGATCAGATTGGACCGAGACGAAGCCATCAACAATCGCTGCAGCTGCTCCACCAGCTGCTCAGCCATCAAGATCGGTGCCAGGCCCAATCGGTCCGTTTGGAAGATCTGCTCCACCTCCACCAGCTGCTCCACCGATCCCTCCCCAAATTCGTGTCGATCCTCCAAGAGAGACGAAGCCGTCTACGATTGCTCAGCCTTCACAATCTGCTGCTCCACCGGCTCCAATTCCACCACCAGCTGCTCAACAATCAAGATCCGTCCCAGTCCCGCCAGCTGCTGCTTCATCCAGCCCAGCACCCACCCGAATCGATCTATCTGAAAGGACTTTGGCTAGGCTAGCACAAATTGCTCCATCTTCCCAAGCTGCTCAGCCAGAATCCGCTCCTTGCCAACCACGACGCCAAATCACAAGATCCGATTTCGAGGGACCAGCGACGCGGACAAGAGGACGCTCGAGAGGTGGATCTATGGACACTTCACCAGTCTTCAGACAAGCTCCTCGCCGATCCAATTTCCGAGCCAGATCCACTGATGGAGACGATGCTCGTACACCTGCGCCAAGAGCAAAGTCAAGGGATCCAGAAGCAACTCCCCGAAGATCTGCCGCATTCAACCAAGCTGATAATGATGTTCTAGGGGCAGCTACTCCTCTAACTGCTCGTGAACAATCCACAGATGGATCTGGCCAACCGGTGGTGAAAAGAGGACGTGGTCGACCAAGGAGGGATCAGTCCGTTAATAGACCGGATGAGGGACCAAGGGGTCAAACTCCAGAGCCAGGACGACCCGAAAAACCGGTTGGTCGGCCACGCGGCGGCTCTTCCAGGGATCAATCTAGGGAACCCGAGGGACCATCAGGACCGACCAACGGCCGACCGCGCGTCCCATCCAGGGAACCGTCAGTCGATGCTCAGCCTCCTCGTAGAGGTCCAGGACGTCCAAGAACCATCTCTCGGGAACCTTCC</canonical>
            <polymorphic>TCCTCAAGTTCATGTTGATCCTCCAAGAGCGTCCCGATCAGATTGGACCGAGACGAAGCCATCAACAATCGCTGCAGCTGCTCCACCAGCTGCTCAGCCATCAAGATCGGTGCCAGGCCCAATCGGTCCGTTTGGAAGATCTGCTCCACCTCCACCAGCTGCTCCACCGATCCCTCCCCAAATTCGTGTCGATCCTCCAAGAGAGACGAAGCCGTCTACGATTGCTCAGCCTTCACAATCTGCTGCTCCACCGGCTCCAATTCCACCACCAGCTGCTCAACAATCAAGATCCGTCCCAGTCCCGCCAGCTGCTGCTTCATCCAGCCCAGCACCCACCCGAATCGATCTATCTGAAAGGACTTTGGCTAGGCTAGCACAAATTGCTCCATCTTCCCAAGCTGCTCAGCCAGAATCCGCTCCTTGCCAACCACGACGCCAAATCACAAGATCCGATTTCGAGGGACCAGCGACGCGGACAAGAGGACGCTCGAGAGGTGGAYCTATGGACACTTCACCAGTCTTCAGACAAGCTCCTCGCCGATCCAATTTCCGAGCCAGATCCACTGATGGAGACGATGCTCGTACACCTGCGCCAAGAGCAAAGTCAAGGGATCCAGAAGCAACTCCCCGAAGATCTGCCGCATTCAACCAAGCTGATAATGATGTTCTAGGGGCAGCTACTCCTCTAACTGCTCGTGAACAATCCACAGATGGATCTGGCCAACCGGTGGTGAAAAGAGGACGTGGTCGACCAAGGAGGGATCAGTCCGTTAATAGACCGGATGAGGGACCAAGGGGTCAAACTCCAGAGCCAGGACGACCCGAAAAACCGGTTGGTCGGCCACGCGGCGGCTCTTCCAGGGATCAATCTAGGGAACCCGAGGGACCATCAGGACCGACCAACGGCCGACCGCGCGTCCCATCCAGGGAACCGTCAGTCGATGCTCAGCCTCCTCGTAGAGGTCCAGGACGTCCAAGAACCATCTCTCGGGAACCTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>138 103 102 97 81 69 56 53 51 47 42 33 31 22 22 19 18 16</canonical_bands>
                <polymorphic_bands>138 103 102 97 93 81 69 56 53 47 33 31 22 22 19 18 16</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>287 159 150 137 81 60 53 51 22</canonical_bands>
                <polymorphic_bands>287 159 150 137 111 81 53 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGCACAAATTGCTCCATCT</pcr_primer_p1>
		<pcr_primer_p2>CTTCTGGATCCCTTGACTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAGCACAAATTGCTCCATCTTCCCAAGCTGCTCAGCCAGAATCCGCTCCTTGCCAACCACGACGCCAAATCACAAGATCCGATTTCGAGGGACCAGCGACGCGGACAAGAGGACGCTCGAGAGGTGGATCTATGGACACTTCACCAGTCTTCAGACAAGCTCCTCGCCGATCCAATTTCCGAGCCAGATCCACTGATGGAGACGATGCTCGTACACCTGCGCCAAGAGCAAAGTCAAGGGATCCAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TAGCACAAATTGCTCCATCTTCCCAAGCTGCTCAGCCAGAATCCGCTCCTTGCCAACCACGACGCCAAATCACAAGATCCGATTTCGAGGGACCAGCGACGCGGACAAGAGGACGCTCGAGAGGTGGAYCTATGGACACTTCACCAGTCTTCAGACAAGCTCCTCGCCGATCCAATTTCCGAGCCAGATCCACTGATGGAGACGATGCTCGTACACCTGCGCCAAGAGCAAAGTCAAGGGATCCAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15257</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>313390</contig_pos>
        <strand>+</strand>
        <context>GTTTTGCACA[A/T]TTGGAGAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCCGTTTTTTTGGAGTCATTGGTCAAGCGAGTAGTACTGGGTTTTGCACA</left_flank>
        <right_flank>TTGGAGAATGTTCACTTGCCATGGTTAAGCTTAAAATTCAAAGTTTTATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATATCTTTGACAGGAGCCAAGATAAATTGGCACAAAGATAAAAGTTAGGGGAAGCTTTAGCTTTTTTTAGGTGTTATGGTACTTTCATGTTCTTTCCAGGTTCTTTTAGGTTTCAGGGTTAAAAATACTAGCTTATGAGTTTGCAGTCGGAGTTATGAATCTTTTGGATTACTGTAGAAATTTCGAAAGACTGTCGAACATTCAAGAATGTTCCTTATAAGAACCTGCCATCAAATGTTCAATTTTTGACTTCTTCTCTAACATATTAAAACAACTTTTAATCAATTTTGGTCCCAAATTTTTGACATTTAGCCTGCCTGTTCTTTCCTATTTTAGGGTACGTACACATAGTTTTTTAATGAATTTGAAATGAGCCTTTTTGGGTTCTCAACCCCCTATTCTTGTGGTTGTGACCCCCGGAAATTAATCGACGCCTTTTTTTTTGGTCCCGTTTTTTTGGAGTCATTGGTCAAGCGAGTAGTACTGGGTTTTGCACAATTGGAGAATGTTCACTTGCCATGGTTAAGCTTAAAATTCAAAGTTTTATCCGTTTATGAGCCTTTTTAGGTCCAAAATTATTTTCTAGAGCCCAGAAGATAATGACTGATCTAGAGGCCAAAAATGAATCGATGCGCGCCAAGCCATAACTTATTTCACACTCAATATTTTTAAATCATCTAAATTGGAAATAATAGAAAAATACAAGAGCTACAAAATGATACTATTTGGATTTAAGTATCCTCTATGAACAAAGTTACAAGCCAAAAACCATCCAAGGCGACTGTGTTATAGCTTATAACTATGTTCATAGACAGGGTACAGCTTCTCAAGTTGTATCATCCTCTGGGTCTTAAAATTTTCTATCACATCCATTTTATGCTATTCGCCGTGAATAGCCCTCCAACCAATTTTAATTACCCTAAGCTTTTAATACCTGGCCTACATTTTCCCTCTTTTGTACTATTACTATTACTATGACCATGAGATAATCCATGCGA</canonical>
            <polymorphic>TTATATCTTTGACAGGAGCCAAGATAAATTGGCACAAAGATAAAAGTTAGGGGAAGCTTTAGCTTTTTTTAGGTGTTATGGTACTTTCATGTTCTTTCCAGGTTCTTTTAGGTTTCAGGGTTAAAAATACTAGCTTATGAGTTTGCAGTCGGAGTTATGAATCTTTTGGATTACTGTAGAAATTTCGAAAGACTGTCGAACATTCAAGAATGTTCCTTATAAGAACCTGCCATCAAATGTTCAATTTTTGACTTCTTCTCTAACATATTAAAACAACTTTTAATCAATTTTGGTCCCAAATTTTTGACATTTAGCCTGCCTGTTCTTTCCTATTTTAGGGTACGTACACATAGTTTTTTAATGAATTTGAAATGAGCCTTTTTGGGTTCTCAACCCCCTATTCTTGTGGTTGTGACCCCCGGAAATTAATCGACGCCTTTTTTTTTGGTCCCGTTTTTTTGGAGTCATTGGTCAAGCGAGTAGTACTGGGTTTTGCACAWTTGGAGAATGTTCACTTGCCATGGTTAAGCTTAAAATTCAAAGTTTTATCCGTTTATGAGCCTTTTTAGGTCCAAAATTATTTTCTAGAGCCCAGAAGATAATGACTGATCTAGAGGCCAAAAATGAATCGATGCGCGCCAAGCCATAACTTATTTCACACTCAATATTTTTAAATCATCTAAATTGGAAATAATAGAAAAATACAAGAGCTACAAAATGATACTATTTGGATTTAAGTATCCTCTATGAACAAAGTTACAAGCCAAAAACCATCCAAGGCGACTGTGTTATAGCTTATAACTATGTTCATAGACAGGGTACAGCTTCTCAAGTTGTATCATCCTCTGGGTCTTAAAATTTTCTATCACATCCATTTTATGCTATTCGCCGTGAATAGCCCTCCAACCAATTTTAATTACCCTAAGCTTTTAATACCTGGCCTACATTTTCCCTCTTTTGTACTATTACTATTACTATGACCATGAGATAATCCATGCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>174 154 107 86 75 65 62 60 52 43 41 36 26 13 6</canonical_bands>
                <polymorphic_bands>174 154 111 107 86 65 62 60 52 43 41 26 13 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCTTTCCTATTTTAGGGTACG</pcr_primer_p1>
		<pcr_primer_p2>TAAAAAGGCTCATAAACGGATA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTTCTTTCCTATTTTAGGGTACGTACACATAGTTTTTTAATGAATTTGAAATGAGCCTTTTTGGGTTCTCAACCCCCTATTCTTGTGGTTGTGACCCCCGGAAATTAATCGACGCCTTTTTTTTTGGTCCCGTTTTTTTGGAGTCATTGGTCAAGCGAGTAGTACTGGGTTTTGCACAATTGGAGAATGTTCACTTGCCATGGTTAAGCTTAAAATTCAAAGTTTTATCCGTTTATGAGCCTTTTTA</canonical_amplicon>
		<polymorphic_amplicon>GTTCTTTCCTATTTTAGGGTACGTACACATAGTTTTTTAATGAATTTGAAATGAGCCTTTTTGGGTTCTCAACCCCCTATTCTTGTGGTTGTGACCCCCGGAAATTAATCGACGCCTTTTTTTTTGGTCCCGTTTTTTTGGAGTCATTGGTCAAGCGAGTAGTACTGGGTTTTGCACAWTTGGAGAATGTTCACTTGCCATGGTTAAGCTTAAAATTCAAAGTTTTATCCGTTTATGAGCCTTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15258</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>313414</contig_pos>
        <strand>+</strand>
        <context>ACTTGCCATG[G/T]TTAAGCTTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGCGAGTAGTACTGGGTTTTGCACAATTGGAGAATGTTCACTTGCCATG</left_flank>
        <right_flank>TTAAGCTTAAAATTCAAAGTTTTATCCGTTTATGAGCCTTTTTAGGTCCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAATTGGCACAAAGATAAAAGTTAGGGGAAGCTTTAGCTTTTTTTAGGTGTTATGGTACTTTCATGTTCTTTCCAGGTTCTTTTAGGTTTCAGGGTTAAAAATACTAGCTTATGAGTTTGCAGTCGGAGTTATGAATCTTTTGGATTACTGTAGAAATTTCGAAAGACTGTCGAACATTCAAGAATGTTCCTTATAAGAACCTGCCATCAAATGTTCAATTTTTGACTTCTTCTCTAACATATTAAAACAACTTTTAATCAATTTTGGTCCCAAATTTTTGACATTTAGCCTGCCTGTTCTTTCCTATTTTAGGGTACGTACACATAGTTTTTTAATGAATTTGAAATGAGCCTTTTTGGGTTCTCAACCCCCTATTCTTGTGGTTGTGACCCCCGGAAATTAATCGACGCCTTTTTTTTTGGTCCCGTTTTTTTGGAGTCATTGGTCAAGCGAGTAGTACTGGGTTTTGCACAATTGGAGAATGTTCACTTGCCATGGTTAAGCTTAAAATTCAAAGTTTTATCCGTTTATGAGCCTTTTTAGGTCCAAAATTATTTTCTAGAGCCCAGAAGATAATGACTGATCTAGAGGCCAAAAATGAATCGATGCGCGCCAAGCCATAACTTATTTCACACTCAATATTTTTAAATCATCTAAATTGGAAATAATAGAAAAATACAAGAGCTACAAAATGATACTATTTGGATTTAAGTATCCTCTATGAACAAAGTTACAAGCCAAAAACCATCCAAGGCGACTGTGTTATAGCTTATAACTATGTTCATAGACAGGGTACAGCTTCTCAAGTTGTATCATCCTCTGGGTCTTAAAATTTTCTATCACATCCATTTTATGCTATTCGCCGTGAATAGCCCTCCAACCAATTTTAATTACCCTAAGCTTTTAATACCTGGCCTACATTTTCCCTCTTTTGTACTATTACTATTACTATGACCATGAGATAATCCATGCGAAAAAGGTTTTGTTGCCAAAAGTGT</canonical>
            <polymorphic>TAAATTGGCACAAAGATAAAAGTTAGGGGAAGCTTTAGCTTTTTTTAGGTGTTATGGTACTTTCATGTTCTTTCCAGGTTCTTTTAGGTTTCAGGGTTAAAAATACTAGCTTATGAGTTTGCAGTCGGAGTTATGAATCTTTTGGATTACTGTAGAAATTTCGAAAGACTGTCGAACATTCAAGAATGTTCCTTATAAGAACCTGCCATCAAATGTTCAATTTTTGACTTCTTCTCTAACATATTAAAACAACTTTTAATCAATTTTGGTCCCAAATTTTTGACATTTAGCCTGCCTGTTCTTTCCTATTTTAGGGTACGTACACATAGTTTTTTAATGAATTTGAAATGAGCCTTTTTGGGTTCTCAACCCCCTATTCTTGTGGTTGTGACCCCCGGAAATTAATCGACGCCTTTTTTTTTGGTCCCGTTTTTTTGGAGTCATTGGTCAAGCGAGTAGTACTGGGTTTTGCACAATTGGAGAATGTTCACTTGCCATGKTTAAGCTTAAAATTCAAAGTTTTATCCGTTTATGAGCCTTTTTAGGTCCAAAATTATTTTCTAGAGCCCAGAAGATAATGACTGATCTAGAGGCCAAAAATGAATCGATGCGCGCCAAGCCATAACTTATTTCACACTCAATATTTTTAAATCATCTAAATTGGAAATAATAGAAAAATACAAGAGCTACAAAATGATACTATTTGGATTTAAGTATCCTCTATGAACAAAGTTACAAGCCAAAAACCATCCAAGGCGACTGTGTTATAGCTTATAACTATGTTCATAGACAGGGTACAGCTTCTCAAGTTGTATCATCCTCTGGGTCTTAAAATTTTCTATCACATCCATTTTATGCTATTCGCCGTGAATAGCCCTCCAACCAATTTTAATTACCCTAAGCTTTTAATACCTGGCCTACATTTTCCCTCTTTTGTACTATTACTATTACTATGACCATGAGATAATCCATGCGAAAAAGGTTTTGTTGCCAAAAGTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>393 256 249 102</canonical_bands>
                <polymorphic_bands>393 358 249</polymorphic_bands>
            </assay>
            <assay>
                <site>CCATGG</site>
                <isoschizomers>
                    <enzyme>Bsp19I</enzyme>
                    <enzyme>NcoI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>495 256 249</canonical_bands>
                <polymorphic_bands>751 249</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTTGAAATGAGCCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AGTCATTATCTTCTGGGCTCTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAATTTGAAATGAGCCTTTTTGGGTTCTCAACCCCCTATTCTTGTGGTTGTGACCCCCGGAAATTAATCGACGCCTTTTTTTTTGGTCCCGTTTTTTTGGAGTCATTGGTCAAGCGAGTAGTACTGGGTTTTGCACAATTGGAGAATGTTCACTTGCCATGGTTAAGCTTAAAATTCAAAGTTTTATCCGTTTATGAGCCTTTTTAGGTCCAAAATTATTTTCTAGAGCCCAGAAGATAATGACT</canonical_amplicon>
		<polymorphic_amplicon>GAATTTGAAATGAGCCTTTTTGGGTTCTCAACCCCCTATTCTTGTGGTTGTGACCCCCGGAAATTAATCGACGCCTTTTTTTTTGGTCCCGTTTTTTTGGAGTCATTGGTCAAGCGAGTAGTACTGGGTTTTGCACAATTGGAGAATGTTCACTTGCCATGKTTAAGCTTAAAATTCAAAGTTTTATCCGTTTATGAGCCTTTTTAGGTCCAAAATTATTTTCTAGAGCCCAGAAGATAATGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15259</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>331130</contig_pos>
        <strand>+</strand>
        <context>CGGTTTTGTA[C/T]CCAAAACCCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAACCGTATAACTCAAGCCACGAAATTCCCAGCCATCGTCGGTTTTGTA</left_flank>
        <right_flank>CCAAAACCCCGGTGCTTGACCTAGTCCTTGAGCCCCTATTCAATTCTCTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTAGTAGACTACTACTAGTAGTAGTGGTACGACTTGATTAGTAACGGAAATGAAATGTTTAGGAAGGGTTTTAAGGAAGAAAAGACCCGGAAAATGACAGTTATGCGCCTTTGAAAATCGATTTTTCCAGCTCAAAATGGGGGAATTGAACCCCTAAAAATCAATTTTCCAGCTAAAAATGTCTTAATTATCGTATTAATTAGCTCAAATTGCTTGAAAATTGAACGTTTAGGGGGGAAAGTCCCGGAAAATGACAGTTTTGCGCCTTCTAAAGTCGATTGTTCCAGCTTAAAATGCGCCCTAATTATGGGTTAATTAGCACTAATTCTTTGAAAATCGAAAGTTTAAAAAGAAGTTTGAGGGGAAAAGTCTCGGAAAATGGCAGTTATGCGTCTTTAAAGTCGATTTTTCCAGCTTGAAATGCGCTAATTATGGGTTAATTAGCTAGCAAACCGTATAACTCAAGCCACGAAATTCCCAGCCATCGTCGGTTTTGTATCCAAAACCCCGGTGCTTGACCTAGTCCTTGAGCCCCTATTCAATTCTCTCTTGGGGGGTACAAATGACAAAAATGACGCAACGCCTCCTAATTAGAGACATCCGAGAGGGCCCTTTCCTCTTTAGAATTGTTACGTCAGTGAACACCTTTAGAAGGGGTCAAAAGAGAAAATGAGCCGGATAATGAGAAGTAAATTGAGCGAACACATGCGCAATATGGGGGTTTTTCTTGGGGTGAAAAATGCCGAAAAAACGTTAAAAATCGGTTAAGAAATTCTCCTAAAACCGCCAAAAATCGGTGAAAAATACCCATAAAATCGCCGGAAAACGCCGAAAATTGATGTTAGAATCGTCTAGCATAGCCTAAAGCGATCGCGAGCTCAATGTTGCAGTCTTCTGTCCTTTACAGCTACGCAGTTAGCTAGCTGGAATCGCTAGCTACTTCTCACCGGGGTACTCTAGAAAATAAAGAATAGGCCACTTTATAACACATCTGGTCCG</canonical>
            <polymorphic>ACTAGTAGACTACTACTAGTAGTAGTGGTACGACTTGATTAGTAACGGAAATGAAATGTTTAGGAAGGGTTTTAAGGAAGAAAAGACCCGGAAAATGACAGTTATGCGCCTTTGAAAATCGATTTTTCCAGCTCAAAATGGGGGAATTGAACCCCTAAAAATCAATTTTCCAGCTAAAAATGTCTTAATTATCGTATTAATTAGCTCAAATTGCTTGAAAATTGAACGTTTAGGGGGGAAAGTCCCGGAAAATGACAGTTTTGCGCCTTCTAAAGTCGATTGTTCCAGCTTAAAATGCGCCCTAATTATGGGTTAATTAGCACTAATTCTTTGAAAATCGAAAGTTTAAAAAGAAGTTTGAGGGGAAAAGTCTCGGAAAATGGCAGTTATGCGTCTTTAAAGTCGATTTTTCCAGCTTGAAATGCGCTAATTATGGGTTAATTAGCTAGCAAACCGTATAACTCAAGCCACGAAATTCCCAGCCATCGTCGGTTTTGTAYCCAAAACCCCGGTGCTTGACCTAGTCCTTGAGCCCCTATTCAATTCTCTCTTGGGGGGTACAAATGACAAAAATGACGCAACGCCTCCTAATTAGAGACATCCGAGAGGGCCCTTTCCTCTTTAGAATTGTTACGTCAGTGAACACCTTTAGAAGGGGTCAAAAGAGAAAATGAGCCGGATAATGAGAAGTAAATTGAGCGAACACATGCGCAATATGGGGGTTTTTCTTGGGGTGAAAAATGCCGAAAAAACGTTAAAAATCGGTTAAGAAATTCTCCTAAAACCGCCAAAAATCGGTGAAAAATACCCATAAAATCGCCGGAAAACGCCGAAAATTGATGTTAGAATCGTCTAGCATAGCCTAAAGCGATCGCGAGCTCAATGTTGCAGTCTTCTGTCCTTTACAGCTACGCAGTTAGCTAGCTGGAATCGCTAGCTACTTCTCACCGGGGTACTCTAGAAAATAAAGAATAGGCCACTTTATAACACATCTGGTCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAAAATCGAAAGTTTAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>GCGTCATTTTTGTCATTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGAAAATCGAAAGTTTAAAAAGAAGTTTGAGGGGAAAAGTCTCGGAAAATGGCAGTTATGCGTCTTTAAAGTCGATTTTTCCAGCTTGAAATGCGCTAATTATGGGTTAATTAGCTAGCAAACCGTATAACTCAAGCCACGAAATTCCCAGCCATCGTCGGTTTTGTATCCAAAACCCCGGTGCTTGACCTAGTCCTTGAGCCCCTATTCAATTCTCTCTTGGGGGGTACAAATGACAAAAATGACGC</canonical_amplicon>
		<polymorphic_amplicon>TTGAAAATCGAAAGTTTAAAAAGAAGTTTGAGGGGAAAAGTCTCGGAAAATGGCAGTTATGCGTCTTTAAAGTCGATTTTTCCAGCTTGAAATGCGCTAATTATGGGTTAATTAGCTAGCAAACCGTATAACTCAAGCCACGAAATTCCCAGCCATCGTCGGTTTTGTAYCCAAAACCCCGGTGCTTGACCTAGTCCTTGAGCCCCTATTCAATTCTCTCTTGGGGGGTACAAATGACAAAAATGACGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15260</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>331165</contig_pos>
        <strand>+</strand>
        <context>TCCTTGAGCC[C/T]CTATTCAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCGTCGGTTTTGTATCCAAAACCCCGGTGCTTGACCTAGTCCTTGAGCC</left_flank>
        <right_flank>CTATTCAATTCTCTCTTGGGGGGTACAAATGACAAAAATGACGCAACGCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATTAGTAACGGAAATGAAATGTTTAGGAAGGGTTTTAAGGAAGAAAAGACCCGGAAAATGACAGTTATGCGCCTTTGAAAATCGATTTTTCCAGCTCAAAATGGGGGAATTGAACCCCTAAAAATCAATTTTCCAGCTAAAAATGTCTTAATTATCGTATTAATTAGCTCAAATTGCTTGAAAATTGAACGTTTAGGGGGGAAAGTCCCGGAAAATGACAGTTTTGCGCCTTCTAAAGTCGATTGTTCCAGCTTAAAATGCGCCCTAATTATGGGTTAATTAGCACTAATTCTTTGAAAATCGAAAGTTTAAAAAGAAGTTTGAGGGGAAAAGTCTCGGAAAATGGCAGTTATGCGTCTTTAAAGTCGATTTTTCCAGCTTGAAATGCGCTAATTATGGGTTAATTAGCTAGCAAACCGTATAACTCAAGCCACGAAATTCCCAGCCATCGTCGGTTTTGTATCCAAAACCCCGGTGCTTGACCTAGTCCTTGAGCCCCTATTCAATTCTCTCTTGGGGGGTACAAATGACAAAAATGACGCAACGCCTCCTAATTAGAGACATCCGAGAGGGCCCTTTCCTCTTTAGAATTGTTACGTCAGTGAACACCTTTAGAAGGGGTCAAAAGAGAAAATGAGCCGGATAATGAGAAGTAAATTGAGCGAACACATGCGCAATATGGGGGTTTTTCTTGGGGTGAAAAATGCCGAAAAAACGTTAAAAATCGGTTAAGAAATTCTCCTAAAACCGCCAAAAATCGGTGAAAAATACCCATAAAATCGCCGGAAAACGCCGAAAATTGATGTTAGAATCGTCTAGCATAGCCTAAAGCGATCGCGAGCTCAATGTTGCAGTCTTCTGTCCTTTACAGCTACGCAGTTAGCTAGCTGGAATCGCTAGCTACTTCTCACCGGGGTACTCTAGAAAATAAAGAATAGGCCACTTTATAACACATCTGGTCCGCACCCTCAAGAGTATTGAATATTACATGGCTAATC</canonical>
            <polymorphic>TGATTAGTAACGGAAATGAAATGTTTAGGAAGGGTTTTAAGGAAGAAAAGACCCGGAAAATGACAGTTATGCGCCTTTGAAAATCGATTTTTCCAGCTCAAAATGGGGGAATTGAACCCCTAAAAATCAATTTTCCAGCTAAAAATGTCTTAATTATCGTATTAATTAGCTCAAATTGCTTGAAAATTGAACGTTTAGGGGGGAAAGTCCCGGAAAATGACAGTTTTGCGCCTTCTAAAGTCGATTGTTCCAGCTTAAAATGCGCCCTAATTATGGGTTAATTAGCACTAATTCTTTGAAAATCGAAAGTTTAAAAAGAAGTTTGAGGGGAAAAGTCTCGGAAAATGGCAGTTATGCGTCTTTAAAGTCGATTTTTCCAGCTTGAAATGCGCTAATTATGGGTTAATTAGCTAGCAAACCGTATAACTCAAGCCACGAAATTCCCAGCCATCGTCGGTTTTGTATCCAAAACCCCGGTGCTTGACCTAGTCCTTGAGCCYCTATTCAATTCTCTCTTGGGGGGTACAAATGACAAAAATGACGCAACGCCTCCTAATTAGAGACATCCGAGAGGGCCCTTTCCTCTTTAGAATTGTTACGTCAGTGAACACCTTTAGAAGGGGTCAAAAGAGAAAATGAGCCGGATAATGAGAAGTAAATTGAGCGAACACATGCGCAATATGGGGGTTTTTCTTGGGGTGAAAAATGCCGAAAAAACGTTAAAAATCGGTTAAGAAATTCTCCTAAAACCGCCAAAAATCGGTGAAAAATACCCATAAAATCGCCGGAAAACGCCGAAAATTGATGTTAGAATCGTCTAGCATAGCCTAAAGCGATCGCGAGCTCAATGTTGCAGTCTTCTGTCCTTTACAGCTACGCAGTTAGCTAGCTGGAATCGCTAGCTACTTCTCACCGGGGTACTCTAGAAAATAAAGAATAGGCCACTTTATAACACATCTGGTCCGCACCCTCAAGAGTATTGAATATTACATGGCTAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>499 268 155 78</canonical_bands>
                <polymorphic_bands>577 268 155</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>499 268 155 78</canonical_bands>
                <polymorphic_bands>577 268 155</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGCGCTAATTATGGGTTAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCTTTTGACCCCTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGCGCTAATTATGGGTTAATTAGCTAGCAAACCGTATAACTCAAGCCACGAAATTCCCAGCCATCGTCGGTTTTGTATCCAAAACCCCGGTGCTTGACCTAGTCCTTGAGCCCCTATTCAATTCTCTCTTGGGGGGTACAAATGACAAAAATGACGCAACGCCTCCTAATTAGAGACATCCGAGAGGGCCCTTTCCTCTTTAGAATTGTTACGTCAGTGAACACCTTTAGAAGGGGTCAAAAGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATGCGCTAATTATGGGTTAATTAGCTAGCAAACCGTATAACTCAAGCCACGAAATTCCCAGCCATCGTCGGTTTTGTATCCAAAACCCCGGTGCTTGACCTAGTCCTTGAGCCYCTATTCAATTCTCTCTTGGGGGGTACAAATGACAAAAATGACGCAACGCCTCCTAATTAGAGACATCCGAGAGGGCCCTTTCCTCTTTAGAATTGTTACGTCAGTGAACACCTTTAGAAGGGGTCAAAAGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15261</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>331188</contig_pos>
        <strand>+</strand>
        <context>CTCTTGGGGG[A/G]TACAAATGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCGGTGCTTGACCTAGTCCTTGAGCCCCTATTCAATTCTCTCTTGGGGG</left_flank>
        <right_flank>TACAAATGACAAAAATGACGCAACGCCTCCTAATTAGAGACATCCGAGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAGGAAGGGTTTTAAGGAAGAAAAGACCCGGAAAATGACAGTTATGCGCCTTTGAAAATCGATTTTTCCAGCTCAAAATGGGGGAATTGAACCCCTAAAAATCAATTTTCCAGCTAAAAATGTCTTAATTATCGTATTAATTAGCTCAAATTGCTTGAAAATTGAACGTTTAGGGGGGAAAGTCCCGGAAAATGACAGTTTTGCGCCTTCTAAAGTCGATTGTTCCAGCTTAAAATGCGCCCTAATTATGGGTTAATTAGCACTAATTCTTTGAAAATCGAAAGTTTAAAAAGAAGTTTGAGGGGAAAAGTCTCGGAAAATGGCAGTTATGCGTCTTTAAAGTCGATTTTTCCAGCTTGAAATGCGCTAATTATGGGTTAATTAGCTAGCAAACCGTATAACTCAAGCCACGAAATTCCCAGCCATCGTCGGTTTTGTATCCAAAACCCCGGTGCTTGACCTAGTCCTTGAGCCCCTATTCAATTCTCTCTTGGGGGGTACAAATGACAAAAATGACGCAACGCCTCCTAATTAGAGACATCCGAGAGGGCCCTTTCCTCTTTAGAATTGTTACGTCAGTGAACACCTTTAGAAGGGGTCAAAAGAGAAAATGAGCCGGATAATGAGAAGTAAATTGAGCGAACACATGCGCAATATGGGGGTTTTTCTTGGGGTGAAAAATGCCGAAAAAACGTTAAAAATCGGTTAAGAAATTCTCCTAAAACCGCCAAAAATCGGTGAAAAATACCCATAAAATCGCCGGAAAACGCCGAAAATTGATGTTAGAATCGTCTAGCATAGCCTAAAGCGATCGCGAGCTCAATGTTGCAGTCTTCTGTCCTTTACAGCTACGCAGTTAGCTAGCTGGAATCGCTAGCTACTTCTCACCGGGGTACTCTAGAAAATAAAGAATAGGCCACTTTATAACACATCTGGTCCGCACCCTCAAGAGTATTGAATATTACATGGCTAATCGGCTTAACCTCTCCTTTTCTGTG</canonical>
            <polymorphic>TTTAGGAAGGGTTTTAAGGAAGAAAAGACCCGGAAAATGACAGTTATGCGCCTTTGAAAATCGATTTTTCCAGCTCAAAATGGGGGAATTGAACCCCTAAAAATCAATTTTCCAGCTAAAAATGTCTTAATTATCGTATTAATTAGCTCAAATTGCTTGAAAATTGAACGTTTAGGGGGGAAAGTCCCGGAAAATGACAGTTTTGCGCCTTCTAAAGTCGATTGTTCCAGCTTAAAATGCGCCCTAATTATGGGTTAATTAGCACTAATTCTTTGAAAATCGAAAGTTTAAAAAGAAGTTTGAGGGGAAAAGTCTCGGAAAATGGCAGTTATGCGTCTTTAAAGTCGATTTTTCCAGCTTGAAATGCGCTAATTATGGGTTAATTAGCTAGCAAACCGTATAACTCAAGCCACGAAATTCCCAGCCATCGTCGGTTTTGTATCCAAAACCCCGGTGCTTGACCTAGTCCTTGAGCCCCTATTCAATTCTCTCTTGGGGGRTACAAATGACAAAAATGACGCAACGCCTCCTAATTAGAGACATCCGAGAGGGCCCTTTCCTCTTTAGAATTGTTACGTCAGTGAACACCTTTAGAAGGGGTCAAAAGAGAAAATGAGCCGGATAATGAGAAGTAAATTGAGCGAACACATGCGCAATATGGGGGTTTTTCTTGGGGTGAAAAATGCCGAAAAAACGTTAAAAATCGGTTAAGAAATTCTCCTAAAACCGCCAAAAATCGGTGAAAAATACCCATAAAATCGCCGGAAAACGCCGAAAATTGATGTTAGAATCGTCTAGCATAGCCTAAAGCGATCGCGAGCTCAATGTTGCAGTCTTCTGTCCTTTACAGCTACGCAGTTAGCTAGCTGGAATCGCTAGCTACTTCTCACCGGGGTACTCTAGAAAATAAAGAATAGGCCACTTTATAACACATCTGGTCCGCACCCTCAAGAGTATTGAATATTACATGGCTAATCGGCTTAACCTCTCCTTTTCTGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 395 104</canonical_bands>
                <polymorphic_bands>896 104</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGCGCTAATTATGGGTTAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCTTTTGACCCCTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGCGCTAATTATGGGTTAATTAGCTAGCAAACCGTATAACTCAAGCCACGAAATTCCCAGCCATCGTCGGTTTTGTATCCAAAACCCCGGTGCTTGACCTAGTCCTTGAGCCCCTATTCAATTCTCTCTTGGGGGGTACAAATGACAAAAATGACGCAACGCCTCCTAATTAGAGACATCCGAGAGGGCCCTTTCCTCTTTAGAATTGTTACGTCAGTGAACACCTTTAGAAGGGGTCAAAAGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATGCGCTAATTATGGGTTAATTAGCTAGCAAACCGTATAACTCAAGCCACGAAATTCCCAGCCATCGTCGGTTTTGTATCCAAAACCCCGGTGCTTGACCTAGTCCTTGAGCCCCTATTCAATTCTCTCTTGGGGGRTACAAATGACAAAAATGACGCAACGCCTCCTAATTAGAGACATCCGAGAGGGCCCTTTCCTCTTTAGAATTGTTACGTCAGTGAACACCTTTAGAAGGGGTCAAAAGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15262</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>331242</contig_pos>
        <strand>+</strand>
        <context>CCGAGAGGGC[C/T]CTTTCCTCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATGACAAAAATGACGCAACGCCTCCTAATTAGAGACATCCGAGAGGGC</left_flank>
        <right_flank>CTTTCCTCTTTAGAATTGTTACGTCAGTGAACACCTTTAGAAGGGGTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAAATCGATTTTTCCAGCTCAAAATGGGGGAATTGAACCCCTAAAAATCAATTTTCCAGCTAAAAATGTCTTAATTATCGTATTAATTAGCTCAAATTGCTTGAAAATTGAACGTTTAGGGGGGAAAGTCCCGGAAAATGACAGTTTTGCGCCTTCTAAAGTCGATTGTTCCAGCTTAAAATGCGCCCTAATTATGGGTTAATTAGCACTAATTCTTTGAAAATCGAAAGTTTAAAAAGAAGTTTGAGGGGAAAAGTCTCGGAAAATGGCAGTTATGCGTCTTTAAAGTCGATTTTTCCAGCTTGAAATGCGCTAATTATGGGTTAATTAGCTAGCAAACCGTATAACTCAAGCCACGAAATTCCCAGCCATCGTCGGTTTTGTATCCAAAACCCCGGTGCTTGACCTAGTCCTTGAGCCCCTATTCAATTCTCTCTTGGGGGGTACAAATGACAAAAATGACGCAACGCCTCCTAATTAGAGACATCCGAGAGGGCCCTTTCCTCTTTAGAATTGTTACGTCAGTGAACACCTTTAGAAGGGGTCAAAAGAGAAAATGAGCCGGATAATGAGAAGTAAATTGAGCGAACACATGCGCAATATGGGGGTTTTTCTTGGGGTGAAAAATGCCGAAAAAACGTTAAAAATCGGTTAAGAAATTCTCCTAAAACCGCCAAAAATCGGTGAAAAATACCCATAAAATCGCCGGAAAACGCCGAAAATTGATGTTAGAATCGTCTAGCATAGCCTAAAGCGATCGCGAGCTCAATGTTGCAGTCTTCTGTCCTTTACAGCTACGCAGTTAGCTAGCTGGAATCGCTAGCTACTTCTCACCGGGGTACTCTAGAAAATAAAGAATAGGCCACTTTATAACACATCTGGTCCGCACCCTCAAGAGTATTGAATATTACATGGCTAATCGGCTTAACCTCTCCTTTTCTGTGTCCTCTCTCTGCTCCACTTGAATACGCGCCTAACACATGTTCATAGTATGAAAA</canonical>
            <polymorphic>TGAAAATCGATTTTTCCAGCTCAAAATGGGGGAATTGAACCCCTAAAAATCAATTTTCCAGCTAAAAATGTCTTAATTATCGTATTAATTAGCTCAAATTGCTTGAAAATTGAACGTTTAGGGGGGAAAGTCCCGGAAAATGACAGTTTTGCGCCTTCTAAAGTCGATTGTTCCAGCTTAAAATGCGCCCTAATTATGGGTTAATTAGCACTAATTCTTTGAAAATCGAAAGTTTAAAAAGAAGTTTGAGGGGAAAAGTCTCGGAAAATGGCAGTTATGCGTCTTTAAAGTCGATTTTTCCAGCTTGAAATGCGCTAATTATGGGTTAATTAGCTAGCAAACCGTATAACTCAAGCCACGAAATTCCCAGCCATCGTCGGTTTTGTATCCAAAACCCCGGTGCTTGACCTAGTCCTTGAGCCCCTATTCAATTCTCTCTTGGGGGGTACAAATGACAAAAATGACGCAACGCCTCCTAATTAGAGACATCCGAGAGGGCYCTTTCCTCTTTAGAATTGTTACGTCAGTGAACACCTTTAGAAGGGGTCAAAAGAGAAAATGAGCCGGATAATGAGAAGTAAATTGAGCGAACACATGCGCAATATGGGGGTTTTTCTTGGGGTGAAAAATGCCGAAAAAACGTTAAAAATCGGTTAAGAAATTCTCCTAAAACCGCCAAAAATCGGTGAAAAATACCCATAAAATCGCCGGAAAACGCCGAAAATTGATGTTAGAATCGTCTAGCATAGCCTAAAGCGATCGCGAGCTCAATGTTGCAGTCTTCTGTCCTTTACAGCTACGCAGTTAGCTAGCTGGAATCGCTAGCTACTTCTCACCGGGGTACTCTAGAAAATAAAGAATAGGCCACTTTATAACACATCTGGTCCGCACCCTCAAGAGTATTGAATATTACATGGCTAATCGGCTTAACCTCTCCTTTTCTGTGTCCTCTCTCTGCTCCACTTGAATACGCGCCTAACACATGTTCATAGTATGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGGCCC</site>
                <isoschizomers>
                    <enzyme>ApaI</enzyme>
                    <enzyme>Bsp120I</enzyme>
                    <enzyme>PspOMI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>422 268 232 78</canonical_bands>
                <polymorphic_bands>422 346 232</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>422 268 232 78</canonical_bands>
                <polymorphic_bands>422 346 232</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>498 366 136</canonical_bands>
                <polymorphic_bands>864 136</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>186 127 84 78 75 65 53 50 42 39 31 30 30 22 19 17 15 13 12 8 4</canonical_bands>
                <polymorphic_bands>186 143 127 84 75 53 50 42 39 31 30 30 22 19 17 15 13 12 8 4</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>499 387 114</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGCGCTAATTATGGGTTAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCTTTTGACCCCTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGCGCTAATTATGGGTTAATTAGCTAGCAAACCGTATAACTCAAGCCACGAAATTCCCAGCCATCGTCGGTTTTGTATCCAAAACCCCGGTGCTTGACCTAGTCCTTGAGCCCCTATTCAATTCTCTCTTGGGGGGTACAAATGACAAAAATGACGCAACGCCTCCTAATTAGAGACATCCGAGAGGGCCCTTTCCTCTTTAGAATTGTTACGTCAGTGAACACCTTTAGAAGGGGTCAAAAGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATGCGCTAATTATGGGTTAATTAGCTAGCAAACCGTATAACTCAAGCCACGAAATTCCCAGCCATCGTCGGTTTTGTATCCAAAACCCCGGTGCTTGACCTAGTCCTTGAGCCCCTATTCAATTCTCTCTTGGGGGGTACAAATGACAAAAATGACGCAACGCCTCCTAATTAGAGACATCCGAGAGGGCYCTTTCCTCTTTAGAATTGTTACGTCAGTGAACACCTTTAGAAGGGGTCAAAAGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15263</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>331362</contig_pos>
        <strand>+</strand>
        <context>GTTTTTCTTG[A/G]GGTGAAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGAGAAGTAAATTGAGCGAACACATGCGCAATATGGGGGTTTTTCTTG</left_flank>
        <right_flank>GGTGAAAAATGCCGAAAAAACGTTAAAAATCGGTTAAGAAATTCTCCTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGGGGAAAGTCCCGGAAAATGACAGTTTTGCGCCTTCTAAAGTCGATTGTTCCAGCTTAAAATGCGCCCTAATTATGGGTTAATTAGCACTAATTCTTTGAAAATCGAAAGTTTAAAAAGAAGTTTGAGGGGAAAAGTCTCGGAAAATGGCAGTTATGCGTCTTTAAAGTCGATTTTTCCAGCTTGAAATGCGCTAATTATGGGTTAATTAGCTAGCAAACCGTATAACTCAAGCCACGAAATTCCCAGCCATCGTCGGTTTTGTATCCAAAACCCCGGTGCTTGACCTAGTCCTTGAGCCCCTATTCAATTCTCTCTTGGGGGGTACAAATGACAAAAATGACGCAACGCCTCCTAATTAGAGACATCCGAGAGGGCCCTTTCCTCTTTAGAATTGTTACGTCAGTGAACACCTTTAGAAGGGGTCAAAAGAGAAAATGAGCCGGATAATGAGAAGTAAATTGAGCGAACACATGCGCAATATGGGGGTTTTTCTTGGGGTGAAAAATGCCGAAAAAACGTTAAAAATCGGTTAAGAAATTCTCCTAAAACCGCCAAAAATCGGTGAAAAATACCCATAAAATCGCCGGAAAACGCCGAAAATTGATGTTAGAATCGTCTAGCATAGCCTAAAGCGATCGCGAGCTCAATGTTGCAGTCTTCTGTCCTTTACAGCTACGCAGTTAGCTAGCTGGAATCGCTAGCTACTTCTCACCGGGGTACTCTAGAAAATAAAGAATAGGCCACTTTATAACACATCTGGTCCGCACCCTCAAGAGTATTGAATATTACATGGCTAATCGGCTTAACCTCTCCTTTTCTGTGTCCTCTCTCTGCTCCACTTGAATACGCGCCTAACACATGTTCATAGTATGAAAAATACGAGATTTCGACCAGAAATAAGGGATTTCGACCTGAAAACAGCCCGAAAATGGCCGGTTTGGGGCAAAATACGGGACCCAATAACCCCAAAAAATAGCGTTTTTTCCAAGGAAAAAC</canonical>
            <polymorphic>GGGGGGAAAGTCCCGGAAAATGACAGTTTTGCGCCTTCTAAAGTCGATTGTTCCAGCTTAAAATGCGCCCTAATTATGGGTTAATTAGCACTAATTCTTTGAAAATCGAAAGTTTAAAAAGAAGTTTGAGGGGAAAAGTCTCGGAAAATGGCAGTTATGCGTCTTTAAAGTCGATTTTTCCAGCTTGAAATGCGCTAATTATGGGTTAATTAGCTAGCAAACCGTATAACTCAAGCCACGAAATTCCCAGCCATCGTCGGTTTTGTATCCAAAACCCCGGTGCTTGACCTAGTCCTTGAGCCCCTATTCAATTCTCTCTTGGGGGGTACAAATGACAAAAATGACGCAACGCCTCCTAATTAGAGACATCCGAGAGGGCCCTTTCCTCTTTAGAATTGTTACGTCAGTGAACACCTTTAGAAGGGGTCAAAAGAGAAAATGAGCCGGATAATGAGAAGTAAATTGAGCGAACACATGCGCAATATGGGGGTTTTTCTTGRGGTGAAAAATGCCGAAAAAACGTTAAAAATCGGTTAAGAAATTCTCCTAAAACCGCCAAAAATCGGTGAAAAATACCCATAAAATCGCCGGAAAACGCCGAAAATTGATGTTAGAATCGTCTAGCATAGCCTAAAGCGATCGCGAGCTCAATGTTGCAGTCTTCTGTCCTTTACAGCTACGCAGTTAGCTAGCTGGAATCGCTAGCTACTTCTCACCGGGGTACTCTAGAAAATAAAGAATAGGCCACTTTATAACACATCTGGTCCGCACCCTCAAGAGTATTGAATATTACATGGCTAATCGGCTTAACCTCTCCTTTTCTGTGTCCTCTCTCTGCTCCACTTGAATACGCGCCTAACACATGTTCATAGTATGAAAAATACGAGATTTCGACCAGAAATAAGGGATTTCGACCTGAAAACAGCCCGAAAATGGCCGGTTTGGGGCAAAATACGGGACCCAATAACCCCAAAAAATAGCGTTTTTTCCAAGGAAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGATAATGAGAAGTAAATTGAG</pcr_primer_p1>
		<pcr_primer_p2>CTAGCTAACTGCGTAGCTGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGGATAATGAGAAGTAAATTGAGCGAACACATGCGCAATATGGGGGTTTTTCTTGGGGTGAAAAATGCCGAAAAAACGTTAAAAATCGGTTAAGAAATTCTCCTAAAACCGCCAAAAATCGGTGAAAAATACCCATAAAATCGCCGGAAAACGCCGAAAATTGATGTTAGAATCGTCTAGCATAGCCTAAAGCGATCGCGAGCTCAATGTTGCAGTCTTCTGTCCTTTACAGCTACGCAGTTAGCTAG</canonical_amplicon>
		<polymorphic_amplicon>CGGATAATGAGAAGTAAATTGAGCGAACACATGCGCAATATGGGGGTTTTTCTTGRGGTGAAAAATGCCGAAAAAACGTTAAAAATCGGTTAAGAAATTCTCCTAAAACCGCCAAAAATCGGTGAAAAATACCCATAAAATCGCCGGAAAACGCCGAAAATTGATGTTAGAATCGTCTAGCATAGCCTAAAGCGATCGCGAGCTCAATGTTGCAGTCTTCTGTCCTTTACAGCTACGCAGTTAGCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15264</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>331386</contig_pos>
        <strand>+</strand>
        <context>GAAAAAACGT[C/T]AAAAATCGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATGCGCAATATGGGGGTTTTTCTTGGGGTGAAAAATGCCGAAAAAACGT</left_flank>
        <right_flank>AAAAATCGGTTAAGAAATTCTCCTAAAACCGCCAAAAATCGGTGAAAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTTTGCGCCTTCTAAAGTCGATTGTTCCAGCTTAAAATGCGCCCTAATTATGGGTTAATTAGCACTAATTCTTTGAAAATCGAAAGTTTAAAAAGAAGTTTGAGGGGAAAAGTCTCGGAAAATGGCAGTTATGCGTCTTTAAAGTCGATTTTTCCAGCTTGAAATGCGCTAATTATGGGTTAATTAGCTAGCAAACCGTATAACTCAAGCCACGAAATTCCCAGCCATCGTCGGTTTTGTATCCAAAACCCCGGTGCTTGACCTAGTCCTTGAGCCCCTATTCAATTCTCTCTTGGGGGGTACAAATGACAAAAATGACGCAACGCCTCCTAATTAGAGACATCCGAGAGGGCCCTTTCCTCTTTAGAATTGTTACGTCAGTGAACACCTTTAGAAGGGGTCAAAAGAGAAAATGAGCCGGATAATGAGAAGTAAATTGAGCGAACACATGCGCAATATGGGGGTTTTTCTTGGGGTGAAAAATGCCGAAAAAACGTTAAAAATCGGTTAAGAAATTCTCCTAAAACCGCCAAAAATCGGTGAAAAATACCCATAAAATCGCCGGAAAACGCCGAAAATTGATGTTAGAATCGTCTAGCATAGCCTAAAGCGATCGCGAGCTCAATGTTGCAGTCTTCTGTCCTTTACAGCTACGCAGTTAGCTAGCTGGAATCGCTAGCTACTTCTCACCGGGGTACTCTAGAAAATAAAGAATAGGCCACTTTATAACACATCTGGTCCGCACCCTCAAGAGTATTGAATATTACATGGCTAATCGGCTTAACCTCTCCTTTTCTGTGTCCTCTCTCTGCTCCACTTGAATACGCGCCTAACACATGTTCATAGTATGAAAAATACGAGATTTCGACCAGAAATAAGGGATTTCGACCTGAAAACAGCCCGAAAATGGCCGGTTTGGGGCAAAATACGGGACCCAATAACCCCAAAAAATAGCGTTTTTTCCAAGGAAAAACGAGCAAAAATAAGGGATTTTCGAT</canonical>
            <polymorphic>AGTTTTGCGCCTTCTAAAGTCGATTGTTCCAGCTTAAAATGCGCCCTAATTATGGGTTAATTAGCACTAATTCTTTGAAAATCGAAAGTTTAAAAAGAAGTTTGAGGGGAAAAGTCTCGGAAAATGGCAGTTATGCGTCTTTAAAGTCGATTTTTCCAGCTTGAAATGCGCTAATTATGGGTTAATTAGCTAGCAAACCGTATAACTCAAGCCACGAAATTCCCAGCCATCGTCGGTTTTGTATCCAAAACCCCGGTGCTTGACCTAGTCCTTGAGCCCCTATTCAATTCTCTCTTGGGGGGTACAAATGACAAAAATGACGCAACGCCTCCTAATTAGAGACATCCGAGAGGGCCCTTTCCTCTTTAGAATTGTTACGTCAGTGAACACCTTTAGAAGGGGTCAAAAGAGAAAATGAGCCGGATAATGAGAAGTAAATTGAGCGAACACATGCGCAATATGGGGGTTTTTCTTGGGGTGAAAAATGCCGAAAAAACGTYAAAAATCGGTTAAGAAATTCTCCTAAAACCGCCAAAAATCGGTGAAAAATACCCATAAAATCGCCGGAAAACGCCGAAAATTGATGTTAGAATCGTCTAGCATAGCCTAAAGCGATCGCGAGCTCAATGTTGCAGTCTTCTGTCCTTTACAGCTACGCAGTTAGCTAGCTGGAATCGCTAGCTACTTCTCACCGGGGTACTCTAGAAAATAAAGAATAGGCCACTTTATAACACATCTGGTCCGCACCCTCAAGAGTATTGAATATTACATGGCTAATCGGCTTAACCTCTCCTTTTCTGTGTCCTCTCTCTGCTCCACTTGAATACGCGCCTAACACATGTTCATAGTATGAAAAATACGAGATTTCGACCAGAAATAAGGGATTTCGACCTGAAAACAGCCCGAAAATGGCCGGTTTGGGGCAAAATACGGGACCCAATAACCCCAAAAAATAGCGTTTTTTCCAAGGAAAAACGAGCAAAAATAAGGGATTTTCGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>317 273 217 51 41 34 33 23 11</canonical_bands>
                <polymorphic_bands>328 273 217 51 41 34 33 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGATAATGAGAAGTAAATTGAG</pcr_primer_p1>
		<pcr_primer_p2>CTAGCTAACTGCGTAGCTGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGGATAATGAGAAGTAAATTGAGCGAACACATGCGCAATATGGGGGTTTTTCTTGGGGTGAAAAATGCCGAAAAAACGTTAAAAATCGGTTAAGAAATTCTCCTAAAACCGCCAAAAATCGGTGAAAAATACCCATAAAATCGCCGGAAAACGCCGAAAATTGATGTTAGAATCGTCTAGCATAGCCTAAAGCGATCGCGAGCTCAATGTTGCAGTCTTCTGTCCTTTACAGCTACGCAGTTAGCTAG</canonical_amplicon>
		<polymorphic_amplicon>CGGATAATGAGAAGTAAATTGAGCGAACACATGCGCAATATGGGGGTTTTTCTTGGGGTGAAAAATGCCGAAAAAACGTYAAAAATCGGTTAAGAAATTCTCCTAAAACCGCCAAAAATCGGTGAAAAATACCCATAAAATCGCCGGAAAACGCCGAAAATTGATGTTAGAATCGTCTAGCATAGCCTAAAGCGATCGCGAGCTCAATGTTGCAGTCTTCTGTCCTTTACAGCTACGCAGTTAGCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15265</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>331405</contig_pos>
        <strand>+</strand>
        <context>GTTAAGAAAT[A/T]CTCCTAAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCTTGGGGTGAAAAATGCCGAAAAAACGTTAAAAATCGGTTAAGAAAT</left_flank>
        <right_flank>CTCCTAAAACCGCCAAAAATCGGTGAAAAATACCCATAAAATCGCCGGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGATTGTTCCAGCTTAAAATGCGCCCTAATTATGGGTTAATTAGCACTAATTCTTTGAAAATCGAAAGTTTAAAAAGAAGTTTGAGGGGAAAAGTCTCGGAAAATGGCAGTTATGCGTCTTTAAAGTCGATTTTTCCAGCTTGAAATGCGCTAATTATGGGTTAATTAGCTAGCAAACCGTATAACTCAAGCCACGAAATTCCCAGCCATCGTCGGTTTTGTATCCAAAACCCCGGTGCTTGACCTAGTCCTTGAGCCCCTATTCAATTCTCTCTTGGGGGGTACAAATGACAAAAATGACGCAACGCCTCCTAATTAGAGACATCCGAGAGGGCCCTTTCCTCTTTAGAATTGTTACGTCAGTGAACACCTTTAGAAGGGGTCAAAAGAGAAAATGAGCCGGATAATGAGAAGTAAATTGAGCGAACACATGCGCAATATGGGGGTTTTTCTTGGGGTGAAAAATGCCGAAAAAACGTTAAAAATCGGTTAAGAAATTCTCCTAAAACCGCCAAAAATCGGTGAAAAATACCCATAAAATCGCCGGAAAACGCCGAAAATTGATGTTAGAATCGTCTAGCATAGCCTAAAGCGATCGCGAGCTCAATGTTGCAGTCTTCTGTCCTTTACAGCTACGCAGTTAGCTAGCTGGAATCGCTAGCTACTTCTCACCGGGGTACTCTAGAAAATAAAGAATAGGCCACTTTATAACACATCTGGTCCGCACCCTCAAGAGTATTGAATATTACATGGCTAATCGGCTTAACCTCTCCTTTTCTGTGTCCTCTCTCTGCTCCACTTGAATACGCGCCTAACACATGTTCATAGTATGAAAAATACGAGATTTCGACCAGAAATAAGGGATTTCGACCTGAAAACAGCCCGAAAATGGCCGGTTTGGGGCAAAATACGGGACCCAATAACCCCAAAAAATAGCGTTTTTTCCAAGGAAAAACGAGCAAAAATAAGGGATTTTCGATCCCAAAAAATGAAATGAAA</canonical>
            <polymorphic>TCGATTGTTCCAGCTTAAAATGCGCCCTAATTATGGGTTAATTAGCACTAATTCTTTGAAAATCGAAAGTTTAAAAAGAAGTTTGAGGGGAAAAGTCTCGGAAAATGGCAGTTATGCGTCTTTAAAGTCGATTTTTCCAGCTTGAAATGCGCTAATTATGGGTTAATTAGCTAGCAAACCGTATAACTCAAGCCACGAAATTCCCAGCCATCGTCGGTTTTGTATCCAAAACCCCGGTGCTTGACCTAGTCCTTGAGCCCCTATTCAATTCTCTCTTGGGGGGTACAAATGACAAAAATGACGCAACGCCTCCTAATTAGAGACATCCGAGAGGGCCCTTTCCTCTTTAGAATTGTTACGTCAGTGAACACCTTTAGAAGGGGTCAAAAGAGAAAATGAGCCGGATAATGAGAAGTAAATTGAGCGAACACATGCGCAATATGGGGGTTTTTCTTGGGGTGAAAAATGCCGAAAAAACGTTAAAAATCGGTTAAGAAATWCTCCTAAAACCGCCAAAAATCGGTGAAAAATACCCATAAAATCGCCGGAAAACGCCGAAAATTGATGTTAGAATCGTCTAGCATAGCCTAAAGCGATCGCGAGCTCAATGTTGCAGTCTTCTGTCCTTTACAGCTACGCAGTTAGCTAGCTGGAATCGCTAGCTACTTCTCACCGGGGTACTCTAGAAAATAAAGAATAGGCCACTTTATAACACATCTGGTCCGCACCCTCAAGAGTATTGAATATTACATGGCTAATCGGCTTAACCTCTCCTTTTCTGTGTCCTCTCTCTGCTCCACTTGAATACGCGCCTAACACATGTTCATAGTATGAAAAATACGAGATTTCGACCAGAAATAAGGGATTTCGACCTGAAAACAGCCCGAAAATGGCCGGTTTGGGGCAAAATACGGGACCCAATAACCCCAAAAAATAGCGTTTTTTCCAAGGAAAAACGAGCAAAAATAAGGGATTTTCGATCCCAAAAAATGAAATGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>504 298 198</canonical_bands>
                <polymorphic_bands>802 198</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>441 104 79 68 67 63 48 36 34 28 11 11 10</canonical_bands>
                <polymorphic_bands>441 142 104 68 67 48 36 34 28 11 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGATAATGAGAAGTAAATTGAG</pcr_primer_p1>
		<pcr_primer_p2>CTAGCTAACTGCGTAGCTGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGGATAATGAGAAGTAAATTGAGCGAACACATGCGCAATATGGGGGTTTTTCTTGGGGTGAAAAATGCCGAAAAAACGTTAAAAATCGGTTAAGAAATTCTCCTAAAACCGCCAAAAATCGGTGAAAAATACCCATAAAATCGCCGGAAAACGCCGAAAATTGATGTTAGAATCGTCTAGCATAGCCTAAAGCGATCGCGAGCTCAATGTTGCAGTCTTCTGTCCTTTACAGCTACGCAGTTAGCTAG</canonical_amplicon>
		<polymorphic_amplicon>CGGATAATGAGAAGTAAATTGAGCGAACACATGCGCAATATGGGGGTTTTTCTTGGGGTGAAAAATGCCGAAAAAACGTTAAAAATCGGTTAAGAAATWCTCCTAAAACCGCCAAAAATCGGTGAAAAATACCCATAAAATCGCCGGAAAACGCCGAAAATTGATGTTAGAATCGTCTAGCATAGCCTAAAGCGATCGCGAGCTCAATGTTGCAGTCTTCTGTCCTTTACAGCTACGCAGTTAGCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15266</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>331420</contig_pos>
        <strand>+</strand>
        <context>TAAAACCGCC[A/T]AAAATCGGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATGCCGAAAAAACGTTAAAAATCGGTTAAGAAATTCTCCTAAAACCGCC</left_flank>
        <right_flank>AAAATCGGTGAAAAATACCCATAAAATCGCCGGAAAACGCCGAAAATTGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAATGCGCCCTAATTATGGGTTAATTAGCACTAATTCTTTGAAAATCGAAAGTTTAAAAAGAAGTTTGAGGGGAAAAGTCTCGGAAAATGGCAGTTATGCGTCTTTAAAGTCGATTTTTCCAGCTTGAAATGCGCTAATTATGGGTTAATTAGCTAGCAAACCGTATAACTCAAGCCACGAAATTCCCAGCCATCGTCGGTTTTGTATCCAAAACCCCGGTGCTTGACCTAGTCCTTGAGCCCCTATTCAATTCTCTCTTGGGGGGTACAAATGACAAAAATGACGCAACGCCTCCTAATTAGAGACATCCGAGAGGGCCCTTTCCTCTTTAGAATTGTTACGTCAGTGAACACCTTTAGAAGGGGTCAAAAGAGAAAATGAGCCGGATAATGAGAAGTAAATTGAGCGAACACATGCGCAATATGGGGGTTTTTCTTGGGGTGAAAAATGCCGAAAAAACGTTAAAAATCGGTTAAGAAATTCTCCTAAAACCGCCAAAAATCGGTGAAAAATACCCATAAAATCGCCGGAAAACGCCGAAAATTGATGTTAGAATCGTCTAGCATAGCCTAAAGCGATCGCGAGCTCAATGTTGCAGTCTTCTGTCCTTTACAGCTACGCAGTTAGCTAGCTGGAATCGCTAGCTACTTCTCACCGGGGTACTCTAGAAAATAAAGAATAGGCCACTTTATAACACATCTGGTCCGCACCCTCAAGAGTATTGAATATTACATGGCTAATCGGCTTAACCTCTCCTTTTCTGTGTCCTCTCTCTGCTCCACTTGAATACGCGCCTAACACATGTTCATAGTATGAAAAATACGAGATTTCGACCAGAAATAAGGGATTTCGACCTGAAAACAGCCCGAAAATGGCCGGTTTGGGGCAAAATACGGGACCCAATAACCCCAAAAAATAGCGTTTTTTCCAAGGAAAAACGAGCAAAAATAAGGGATTTTCGATCCCAAAAAATGAAATGAAATTTTTCCAGGGCTGC</canonical>
            <polymorphic>TAAAATGCGCCCTAATTATGGGTTAATTAGCACTAATTCTTTGAAAATCGAAAGTTTAAAAAGAAGTTTGAGGGGAAAAGTCTCGGAAAATGGCAGTTATGCGTCTTTAAAGTCGATTTTTCCAGCTTGAAATGCGCTAATTATGGGTTAATTAGCTAGCAAACCGTATAACTCAAGCCACGAAATTCCCAGCCATCGTCGGTTTTGTATCCAAAACCCCGGTGCTTGACCTAGTCCTTGAGCCCCTATTCAATTCTCTCTTGGGGGGTACAAATGACAAAAATGACGCAACGCCTCCTAATTAGAGACATCCGAGAGGGCCCTTTCCTCTTTAGAATTGTTACGTCAGTGAACACCTTTAGAAGGGGTCAAAAGAGAAAATGAGCCGGATAATGAGAAGTAAATTGAGCGAACACATGCGCAATATGGGGGTTTTTCTTGGGGTGAAAAATGCCGAAAAAACGTTAAAAATCGGTTAAGAAATTCTCCTAAAACCGCCWAAAATCGGTGAAAAATACCCATAAAATCGCCGGAAAACGCCGAAAATTGATGTTAGAATCGTCTAGCATAGCCTAAAGCGATCGCGAGCTCAATGTTGCAGTCTTCTGTCCTTTACAGCTACGCAGTTAGCTAGCTGGAATCGCTAGCTACTTCTCACCGGGGTACTCTAGAAAATAAAGAATAGGCCACTTTATAACACATCTGGTCCGCACCCTCAAGAGTATTGAATATTACATGGCTAATCGGCTTAACCTCTCCTTTTCTGTGTCCTCTCTCTGCTCCACTTGAATACGCGCCTAACACATGTTCATAGTATGAAAAATACGAGATTTCGACCAGAAATAAGGGATTTCGACCTGAAAACAGCCCGAAAATGGCCGGTTTGGGGCAAAATACGGGACCCAATAACCCCAAAAAATAGCGTTTTTTCCAAGGAAAAACGAGCAAAAATAAGGGATTTTCGATCCCAAAAAATGAAATGAAATTTTTCCAGGGCTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGATAATGAGAAGTAAATTGAG</pcr_primer_p1>
		<pcr_primer_p2>CTAGCTAACTGCGTAGCTGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGGATAATGAGAAGTAAATTGAGCGAACACATGCGCAATATGGGGGTTTTTCTTGGGGTGAAAAATGCCGAAAAAACGTTAAAAATCGGTTAAGAAATTCTCCTAAAACCGCCAAAAATCGGTGAAAAATACCCATAAAATCGCCGGAAAACGCCGAAAATTGATGTTAGAATCGTCTAGCATAGCCTAAAGCGATCGCGAGCTCAATGTTGCAGTCTTCTGTCCTTTACAGCTACGCAGTTAGCTAG</canonical_amplicon>
		<polymorphic_amplicon>CGGATAATGAGAAGTAAATTGAGCGAACACATGCGCAATATGGGGGTTTTTCTTGGGGTGAAAAATGCCGAAAAAACGTTAAAAATCGGTTAAGAAATTCTCCTAAAACCGCCWAAAATCGGTGAAAAATACCCATAAAATCGCCGGAAAACGCCGAAAATTGATGTTAGAATCGTCTAGCATAGCCTAAAGCGATCGCGAGCTCAATGTTGCAGTCTTCTGTCCTTTACAGCTACGCAGTTAGCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15267</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>331470</contig_pos>
        <strand>+</strand>
        <context>CCGAAAATTG[A/G]TGTTAGAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAATCGGTGAAAAATACCCATAAAATCGCCGGAAAACGCCGAAAATTG</left_flank>
        <right_flank>TGTTAGAATCGTCTAGCATAGCCTAAAGCGATCGCGAGCTCAATGTTGCA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTTTAAAAAGAAGTTTGAGGGGAAAAGTCTCGGAAAATGGCAGTTATGCGTCTTTAAAGTCGATTTTTCCAGCTTGAAATGCGCTAATTATGGGTTAATTAGCTAGCAAACCGTATAACTCAAGCCACGAAATTCCCAGCCATCGTCGGTTTTGTATCCAAAACCCCGGTGCTTGACCTAGTCCTTGAGCCCCTATTCAATTCTCTCTTGGGGGGTACAAATGACAAAAATGACGCAACGCCTCCTAATTAGAGACATCCGAGAGGGCCCTTTCCTCTTTAGAATTGTTACGTCAGTGAACACCTTTAGAAGGGGTCAAAAGAGAAAATGAGCCGGATAATGAGAAGTAAATTGAGCGAACACATGCGCAATATGGGGGTTTTTCTTGGGGTGAAAAATGCCGAAAAAACGTTAAAAATCGGTTAAGAAATTCTCCTAAAACCGCCAAAAATCGGTGAAAAATACCCATAAAATCGCCGGAAAACGCCGAAAATTGATGTTAGAATCGTCTAGCATAGCCTAAAGCGATCGCGAGCTCAATGTTGCAGTCTTCTGTCCTTTACAGCTACGCAGTTAGCTAGCTGGAATCGCTAGCTACTTCTCACCGGGGTACTCTAGAAAATAAAGAATAGGCCACTTTATAACACATCTGGTCCGCACCCTCAAGAGTATTGAATATTACATGGCTAATCGGCTTAACCTCTCCTTTTCTGTGTCCTCTCTCTGCTCCACTTGAATACGCGCCTAACACATGTTCATAGTATGAAAAATACGAGATTTCGACCAGAAATAAGGGATTTCGACCTGAAAACAGCCCGAAAATGGCCGGTTTGGGGCAAAATACGGGACCCAATAACCCCAAAAAATAGCGTTTTTTCCAAGGAAAAACGAGCAAAAATAAGGGATTTTCGATCCCAAAAAATGAAATGAAATTTTTCCAGGGCTGCCATATGACGCACTTCTCTGTGAAGCTCTTCGAAGATCTATCCTCCTTACG</canonical>
            <polymorphic>AAAGTTTAAAAAGAAGTTTGAGGGGAAAAGTCTCGGAAAATGGCAGTTATGCGTCTTTAAAGTCGATTTTTCCAGCTTGAAATGCGCTAATTATGGGTTAATTAGCTAGCAAACCGTATAACTCAAGCCACGAAATTCCCAGCCATCGTCGGTTTTGTATCCAAAACCCCGGTGCTTGACCTAGTCCTTGAGCCCCTATTCAATTCTCTCTTGGGGGGTACAAATGACAAAAATGACGCAACGCCTCCTAATTAGAGACATCCGAGAGGGCCCTTTCCTCTTTAGAATTGTTACGTCAGTGAACACCTTTAGAAGGGGTCAAAAGAGAAAATGAGCCGGATAATGAGAAGTAAATTGAGCGAACACATGCGCAATATGGGGGTTTTTCTTGGGGTGAAAAATGCCGAAAAAACGTTAAAAATCGGTTAAGAAATTCTCCTAAAACCGCCAAAAATCGGTGAAAAATACCCATAAAATCGCCGGAAAACGCCGAAAATTGRTGTTAGAATCGTCTAGCATAGCCTAAAGCGATCGCGAGCTCAATGTTGCAGTCTTCTGTCCTTTACAGCTACGCAGTTAGCTAGCTGGAATCGCTAGCTACTTCTCACCGGGGTACTCTAGAAAATAAAGAATAGGCCACTTTATAACACATCTGGTCCGCACCCTCAAGAGTATTGAATATTACATGGCTAATCGGCTTAACCTCTCCTTTTCTGTGTCCTCTCTCTGCTCCACTTGAATACGCGCCTAACACATGTTCATAGTATGAAAAATACGAGATTTCGACCAGAAATAAGGGATTTCGACCTGAAAACAGCCCGAAAATGGCCGGTTTGGGGCAAAATACGGGACCCAATAACCCCAAAAAATAGCGTTTTTTCCAAGGAAAAACGAGCAAAAATAAGGGATTTTCGATCCCAAAAAATGAAATGAAATTTTTCCAGGGCTGCCATATGACGCACTTCTCTGTGAAGCTCTTCGAAGATCTATCCTCCTTACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGATAATGAGAAGTAAATTGAG</pcr_primer_p1>
		<pcr_primer_p2>CTAGCTAACTGCGTAGCTGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGGATAATGAGAAGTAAATTGAGCGAACACATGCGCAATATGGGGGTTTTTCTTGGGGTGAAAAATGCCGAAAAAACGTTAAAAATCGGTTAAGAAATTCTCCTAAAACCGCCAAAAATCGGTGAAAAATACCCATAAAATCGCCGGAAAACGCCGAAAATTGATGTTAGAATCGTCTAGCATAGCCTAAAGCGATCGCGAGCTCAATGTTGCAGTCTTCTGTCCTTTACAGCTACGCAGTTAGCTAG</canonical_amplicon>
		<polymorphic_amplicon>CGGATAATGAGAAGTAAATTGAGCGAACACATGCGCAATATGGGGGTTTTTCTTGGGGTGAAAAATGCCGAAAAAACGTTAAAAATCGGTTAAGAAATTCTCCTAAAACCGCCAAAAATCGGTGAAAAATACCCATAAAATCGCCGGAAAACGCCGAAAATTGRTGTTAGAATCGTCTAGCATAGCCTAAAGCGATCGCGAGCTCAATGTTGCAGTCTTCTGTCCTTTACAGCTACGCAGTTAGCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15268</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>332828</contig_pos>
        <strand>+</strand>
        <context>AAACTCRAAA[A/G]TTGGGTTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCAATCTGATATTCAAGCTGGAGACGTCAAGCTCTCCAGAAACTCGAAA</left_flank>
        <right_flank>TTGGGTTTCAAGACCCTTTTCAGGTCCGGGTACTTCTGAAATAGCTAGGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCTAATTTTTGATTCCCCCTTTAAGGGGGGGGGGGGCGTCTTGGTGATAATAAGGCTGAGATGGAATTAGTTGTTTATTAGTTTCGAAAGAAGGCTTTAAAGCTTACGTTCTTACTCCGTCGCCTTCAATAGATGACGTTCAGCCATCTGGTGGAGCGCGGCAATTGAAAATGAGAACAAAAGGAATGGACTTTTGAAGGAAGGGGGGTATAACACAGGAGAAAGAAGAGGTCAAATATCAGCGAACGGAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTGAGAGCCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTTCAGCCAGGAGATCAGGAGGTCTAGGAGGCATCCAGATGTCTGTAAGATTGTCAGCAATCTGATATTCAAGCTGGAGACGTCAAGCTCTCCAGAAACTCGAAAGTTGGGTTTCAAGACCCTTTTCAGGTCCGGGTACTTCTGAAATAGCTAGGTTACTGTAGCCTAGTGGTCCTCACGTTTTCCGGATTTTCGAAGCTTATTCTTGATAGGACGATCTCTTTGGAACCTTGGAACCTTGGAACCTAGCCCTTTCGATCCTGAAACCGTGAATACTAGGAATCTAAGATCCTTGGAATCCTGGACACACAGACAGACGTATTCCTTGAACCTTGGAAACATTTGATCTTCAGATCCTAAGATCCCCAGGTTTAGGAATCTTTGGATCCTTAGAATCCTCGGTACCATAGCTTTATACCCATCCTTTTTGGGCTCTTTGCCACTTGTTCTCCCCATAATTTCCCGCAAAGTCATTATTGCTCATCATAATAATGTGAACTCTTGACAACGAACATTTTTGTTGTCAAGCAGAGCAAGTTTATGAGCCCAGTCTATGTGTAGTTGTGTTGTCGTTCCTCTCTTCTTATGATGATTGATGGGAAGAAC</canonical>
            <polymorphic>CCCTAATTTTTGATTCCCCCTTTAAGGGGGGGGGGGGCGTCTTGGTGATAATAAGGCTGAGATGGAATTAGTTGTTTATTAGTTTCGAAAGAAGGCTTTAAAGCTTACGTTCTTACTCCGTCGCCTTCAATAGATGACGTTCAGCCATCTGGTGGAGCGCGGCAATTGAAAATGAGAACAAAAGGAATGGACTTTTGAAGGAAGGGGGGTATAACACAGGAGAAAGAAGAGGTCAAATATCAGCGAACGGAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTGAGAGCCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTTCAGCCAGGAGATCAGGAGGTCTAGGAGGCATCCAGATGTCTGTAAGATTGTCAGCAATCTGATATTCAAGCTGGAGACGTCAAGCTCTCCAGAAACTCGAAARTTGGGTTTCAAGACCCTTTTCAGGTCCGGGTACTTCTGAAATAGCTAGGTTACTGTAGCCTAGTGGTCCTCACGTTTTCCGGATTTTCGAAGCTTATTCTTGATAGGACGATCTCTTTGGAACCTTGGAACCTTGGAACCTAGCCCTTTCGATCCTGAAACCGTGAATACTAGGAATCTAAGATCCTTGGAATCCTGGACACACAGACAGACGTATTCCTTGAACCTTGGAAACATTTGATCTTCAGATCCTAAGATCCCCAGGTTTAGGAATCTTTGGATCCTTAGAATCCTCGGTACCATAGCTTTATACCCATCCTTTTTGGGCTCTTTGCCACTTGTTCTCCCCATAATTTCCCGCAAAGTCATTATTGCTCATCATAATAATGTGAACTCTTGACAACGAACATTTTTGTTGTCAAGCAGAGCAAGTTTATGAGCCCAGTCTATGTGTAGTTGTGTTGTCGTTCCTCTCTTCTTATGATGATTGATGGGAAGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGATGTCTGTAAGATTGTCA</pcr_primer_p1>
		<pcr_primer_p2>AGATTCCTAGTATTCACGGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCAGATGTCTGTAAGATTGTCAGCAATCTGATATTCAAGCTGGAGACGTCAAGCTCTCCAGAAACTCGAAAGTTGGGTTTCAAGACCCTTTTCAGGTCCGGGTACTTCTGAAATAGCTAGGTTACTGTAGCCTAGTGGTCCTCACGTTTTCCGGATTTTCGAAGCTTATTCTTGATAGGACGATCTCTTTGGAACCTTGGAACCTTGGAACCTAGCCCTTTCGATCCTGAAACCGTGAATACTAGGAATCT</canonical_amplicon>
		<polymorphic_amplicon>CCAGATGTCTGTAAGATTGTCAGCAATCTGATATTCAAGCTGGAGACGTCAAGCTCTCCAGAAACTCGAAARTTGGGTTTCAAGACCCTTTTCAGGTCCGGGTACTTCTGAAATAGCTAGGTTACTGTAGCCTAGTGGTCCTCACGTTTTCCGGATTTTCGAAGCTTATTCTTGATAGGACGATCTCTTTGGAACCTTGGAACCTTGGAACCTAGCCCTTTCGATCCTGAAACCGTGAATACTAGGAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15269</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>332824</contig_pos>
        <strand>+</strand>
        <context>CCAGAAACTC[A/G]AAARTTGGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTCAGCAATCTGATATTCAAGCTGGAGACGTCAAGCTCTCCAGAAACTC</left_flank>
        <right_flank>AAAGTTGGGTTTCAAGACCCTTTTCAGGTCCGGGTACTTCTGAAATAGCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGACCCTAATTTTTGATTCCCCCTTTAAGGGGGGGGGGGGCGTCTTGGTGATAATAAGGCTGAGATGGAATTAGTTGTTTATTAGTTTCGAAAGAAGGCTTTAAAGCTTACGTTCTTACTCCGTCGCCTTCAATAGATGACGTTCAGCCATCTGGTGGAGCGCGGCAATTGAAAATGAGAACAAAAGGAATGGACTTTTGAAGGAAGGGGGGTATAACACAGGAGAAAGAAGAGGTCAAATATCAGCGAACGGAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTGAGAGCCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTTCAGCCAGGAGATCAGGAGGTCTAGGAGGCATCCAGATGTCTGTAAGATTGTCAGCAATCTGATATTCAAGCTGGAGACGTCAAGCTCTCCAGAAACTCGAAAGTTGGGTTTCAAGACCCTTTTCAGGTCCGGGTACTTCTGAAATAGCTAGGTTACTGTAGCCTAGTGGTCCTCACGTTTTCCGGATTTTCGAAGCTTATTCTTGATAGGACGATCTCTTTGGAACCTTGGAACCTTGGAACCTAGCCCTTTCGATCCTGAAACCGTGAATACTAGGAATCTAAGATCCTTGGAATCCTGGACACACAGACAGACGTATTCCTTGAACCTTGGAAACATTTGATCTTCAGATCCTAAGATCCCCAGGTTTAGGAATCTTTGGATCCTTAGAATCCTCGGTACCATAGCTTTATACCCATCCTTTTTGGGCTCTTTGCCACTTGTTCTCCCCATAATTTCCCGCAAAGTCATTATTGCTCATCATAATAATGTGAACTCTTGACAACGAACATTTTTGTTGTCAAGCAGAGCAAGTTTATGAGCCCAGTCTATGTGTAGTTGTGTTGTCGTTCCTCTCTTCTTATGATGATTGATGGGAA</canonical>
            <polymorphic>CGGACCCTAATTTTTGATTCCCCCTTTAAGGGGGGGGGGGGCGTCTTGGTGATAATAAGGCTGAGATGGAATTAGTTGTTTATTAGTTTCGAAAGAAGGCTTTAAAGCTTACGTTCTTACTCCGTCGCCTTCAATAGATGACGTTCAGCCATCTGGTGGAGCGCGGCAATTGAAAATGAGAACAAAAGGAATGGACTTTTGAAGGAAGGGGGGTATAACACAGGAGAAAGAAGAGGTCAAATATCAGCGAACGGAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTGAGAGCCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTTCAGCCAGGAGATCAGGAGGTCTAGGAGGCATCCAGATGTCTGTAAGATTGTCAGCAATCTGATATTCAAGCTGGAGACGTCAAGCTCTCCAGAAACTCRAAAGTTGGGTTTCAAGACCCTTTTCAGGTCCGGGTACTTCTGAAATAGCTAGGTTACTGTAGCCTAGTGGTCCTCACGTTTTCCGGATTTTCGAAGCTTATTCTTGATAGGACGATCTCTTTGGAACCTTGGAACCTTGGAACCTAGCCCTTTCGATCCTGAAACCGTGAATACTAGGAATCTAAGATCCTTGGAATCCTGGACACACAGACAGACGTATTCCTTGAACCTTGGAAACATTTGATCTTCAGATCCTAAGATCCCCAGGTTTAGGAATCTTTGGATCCTTAGAATCCTCGGTACCATAGCTTTATACCCATCCTTTTTGGGCTCTTTGCCACTTGTTCTCCCCATAATTTCCCGCAAAGTCATTATTGCTCATCATAATAATGTGAACTCTTGACAACGAACATTTTTGTTGTCAAGCAGAGCAAGTTTATGAGCCCAGTCTATGTGTAGTTGTGTTGTCGTTCCTCTCTTCTTATGATGATTGATGGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>409 346 93 90 62</canonical_bands>
                <polymorphic_bands>502 346 90 62</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAGATGTCTGTAAGATTGTCA</pcr_primer_p1>
		<pcr_primer_p2>AGATTCCTAGTATTCACGGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCAGATGTCTGTAAGATTGTCAGCAATCTGATATTCAAGCTGGAGACGTCAAGCTCTCCAGAAACTCGAAAGTTGGGTTTCAAGACCCTTTTCAGGTCCGGGTACTTCTGAAATAGCTAGGTTACTGTAGCCTAGTGGTCCTCACGTTTTCCGGATTTTCGAAGCTTATTCTTGATAGGACGATCTCTTTGGAACCTTGGAACCTTGGAACCTAGCCCTTTCGATCCTGAAACCGTGAATACTAGGAATCT</canonical_amplicon>
		<polymorphic_amplicon>CCAGATGTCTGTAAGATTGTCAGCAATCTGATATTCAAGCTGGAGACGTCAAGCTCTCCAGAAACTCRAAAGTTGGGTTTCAAGACCCTTTTCAGGTCCGGGTACTTCTGAAATAGCTAGGTTACTGTAGCCTAGTGGTCCTCACGTTTTCCGGATTTTCGAAGCTTATTCTTGATAGGACGATCTCTTTGGAACCTTGGAACCTTGGAACCTAGCCCTTTCGATCCTGAAACCGTGAATACTAGGAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15270</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>332734</contig_pos>
        <strand>+</strand>
        <context>TTCAGCCAGG[A/G]GATCAGGAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTTCAGCCAGG</left_flank>
        <right_flank>GATCAGGAGGTCTAGGAGGCATCCAGATGTCTGTAAGATTGTCAGCAATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTCCTGAAGCGTTATTTTTGGTCCGCTTTTCTAAAGTAGCGTCTAGACGTCGCCTAGAAAAATCTGACCATTTTTGCCCTAGACCTCCCGGACCCTAATTTTTGATTCCCCCTTTAAGGGGGGGGGGGGCGTCTTGGTGATAATAAGGCTGAGATGGAATTAGTTGTTTATTAGTTTCGAAAGAAGGCTTTAAAGCTTACGTTCTTACTCCGTCGCCTTCAATAGATGACGTTCAGCCATCTGGTGGAGCGCGGCAATTGAAAATGAGAACAAAAGGAATGGACTTTTGAAGGAAGGGGGGTATAACACAGGAGAAAGAAGAGGTCAAATATCAGCGAACGGAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTGAGAGCCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTTCAGCCAGGAGATCAGGAGGTCTAGGAGGCATCCAGATGTCTGTAAGATTGTCAGCAATCTGATATTCAAGCTGGAGACGTCAAGCTCTCCAGAAACTCGAAAGTTGGGTTTCAAGACCCTTTTCAGGTCCGGGTACTTCTGAAATAGCTAGGTTACTGTAGCCTAGTGGTCCTCACGTTTTCCGGATTTTCGAAGCTTATTCTTGATAGGACGATCTCTTTGGAACCTTGGAACCTTGGAACCTAGCCCTTTCGATCCTGAAACCGTGAATACTAGGAATCTAAGATCCTTGGAATCCTGGACACACAGACAGACGTATTCCTTGAACCTTGGAAACATTTGATCTTCAGATCCTAAGATCCCCAGGTTTAGGAATCTTTGGATCCTTAGAATCCTCGGTACCATAGCTTTATACCCATCCTTTTTGGGCTCTTTGCCACTTGTTCTCCCCATAATTTCCCGCAAAGTCATTATTGCTCATCATAATAATGTGAACTCTTGACAACGAA</canonical>
            <polymorphic>ACCTCCTGAAGCGTTATTTTTGGTCCGCTTTTCTAAAGTAGCGTCTAGACGTCGCCTAGAAAAATCTGACCATTTTTGCCCTAGACCTCCCGGACCCTAATTTTTGATTCCCCCTTTAAGGGGGGGGGGGGCGTCTTGGTGATAATAAGGCTGAGATGGAATTAGTTGTTTATTAGTTTCGAAAGAAGGCTTTAAAGCTTACGTTCTTACTCCGTCGCCTTCAATAGATGACGTTCAGCCATCTGGTGGAGCGCGGCAATTGAAAATGAGAACAAAAGGAATGGACTTTTGAAGGAAGGGGGGTATAACACAGGAGAAAGAAGAGGTCAAATATCAGCGAACGGAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTGAGAGCCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTTCAGCCAGGRGATCAGGAGGTCTAGGAGGCATCCAGATGTCTGTAAGATTGTCAGCAATCTGATATTCAAGCTGGAGACGTCAAGCTCTCCAGAAACTCGAAAGTTGGGTTTCAAGACCCTTTTCAGGTCCGGGTACTTCTGAAATAGCTAGGTTACTGTAGCCTAGTGGTCCTCACGTTTTCCGGATTTTCGAAGCTTATTCTTGATAGGACGATCTCTTTGGAACCTTGGAACCTTGGAACCTAGCCCTTTCGATCCTGAAACCGTGAATACTAGGAATCTAAGATCCTTGGAATCCTGGACACACAGACAGACGTATTCCTTGAACCTTGGAAACATTTGATCTTCAGATCCTAAGATCCCCAGGTTTAGGAATCTTTGGATCCTTAGAATCCTCGGTACCATAGCTTTATACCCATCCTTTTTGGGCTCTTTGCCACTTGTTCTCCCCATAATTTCCCGCAAAGTCATTATTGCTCATCATAATAATGTGAACTCTTGACAACGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTTGTTTGGGACTTGTCT</pcr_primer_p1>
		<pcr_primer_p2>TCCAGCTTGAATATCAGATTG</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>GAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTGAGAGCCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTTCAGCCAGGAGATCAGGAGGTCTAGGAGGCATCCAGATGTCTGTAAGATTGTCAGCAATCTGATATTCAAGCTGGA</canonical_amplicon>
		<polymorphic_amplicon>GAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTGAGAGCCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTTCAGCCAGGRGATCAGGAGGTCTAGGAGGCATCCAGATGTCTGTAAGATTGTCAGCAATCTGATATTCAAGCTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15271</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>332682</contig_pos>
        <strand>+</strand>
        <context>RGARCCGGGG[A/G]AAATTGGAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTGAGAGCCGGGG</left_flank>
        <right_flank>AAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTTCAGCCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTAGCGCTATTTTCGTTCGGAGAAGCTTCTGGCGTTTTCGAAGGTTCTAGACCTCCTGAAGCGTTATTTTTGGTCCGCTTTTCTAAAGTAGCGTCTAGACGTCGCCTAGAAAAATCTGACCATTTTTGCCCTAGACCTCCCGGACCCTAATTTTTGATTCCCCCTTTAAGGGGGGGGGGGGCGTCTTGGTGATAATAAGGCTGAGATGGAATTAGTTGTTTATTAGTTTCGAAAGAAGGCTTTAAAGCTTACGTTCTTACTCCGTCGCCTTCAATAGATGACGTTCAGCCATCTGGTGGAGCGCGGCAATTGAAAATGAGAACAAAAGGAATGGACTTTTGAAGGAAGGGGGGTATAACACAGGAGAAAGAAGAGGTCAAATATCAGCGAACGGAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTGAGAGCCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTTCAGCCAGGAGATCAGGAGGTCTAGGAGGCATCCAGATGTCTGTAAGATTGTCAGCAATCTGATATTCAAGCTGGAGACGTCAAGCTCTCCAGAAACTCGAAAGTTGGGTTTCAAGACCCTTTTCAGGTCCGGGTACTTCTGAAATAGCTAGGTTACTGTAGCCTAGTGGTCCTCACGTTTTCCGGATTTTCGAAGCTTATTCTTGATAGGACGATCTCTTTGGAACCTTGGAACCTTGGAACCTAGCCCTTTCGATCCTGAAACCGTGAATACTAGGAATCTAAGATCCTTGGAATCCTGGACACACAGACAGACGTATTCCTTGAACCTTGGAAACATTTGATCTTCAGATCCTAAGATCCCCAGGTTTAGGAATCTTTGGATCCTTAGAATCCTCGGTACCATAGCTTTATACCCATCCTTTTTGGGCTCTTTGCCACTTGTTCTCCCCATAATT</canonical>
            <polymorphic>ATTTAGCGCTATTTTCGTTCGGAGAAGCTTCTGGCGTTTTCGAAGGTTCTAGACCTCCTGAAGCGTTATTTTTGGTCCGCTTTTCTAAAGTAGCGTCTAGACGTCGCCTAGAAAAATCTGACCATTTTTGCCCTAGACCTCCCGGACCCTAATTTTTGATTCCCCCTTTAAGGGGGGGGGGGGCGTCTTGGTGATAATAAGGCTGAGATGGAATTAGTTGTTTATTAGTTTCGAAAGAAGGCTTTAAAGCTTACGTTCTTACTCCGTCGCCTTCAATAGATGACGTTCAGCCATCTGGTGGAGCGCGGCAATTGAAAATGAGAACAAAAGGAATGGACTTTTGAAGGAAGGGGGGTATAACACAGGAGAAAGAAGAGGTCAAATATCAGCGAACGGAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTGAGAGCCGGGGRAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTTCAGCCAGGAGATCAGGAGGTCTAGGAGGCATCCAGATGTCTGTAAGATTGTCAGCAATCTGATATTCAAGCTGGAGACGTCAAGCTCTCCAGAAACTCGAAAGTTGGGTTTCAAGACCCTTTTCAGGTCCGGGTACTTCTGAAATAGCTAGGTTACTGTAGCCTAGTGGTCCTCACGTTTTCCGGATTTTCGAAGCTTATTCTTGATAGGACGATCTCTTTGGAACCTTGGAACCTTGGAACCTAGCCCTTTCGATCCTGAAACCGTGAATACTAGGAATCTAAGATCCTTGGAATCCTGGACACACAGACAGACGTATTCCTTGAACCTTGGAAACATTTGATCTTCAGATCCTAAGATCCCCAGGTTTAGGAATCTTTGGATCCTTAGAATCCTCGGTACCATAGCTTTATACCCATCCTTTTTGGGCTCTTTGCCACTTGTTCTCCCCATAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTTGTTTGGGACTTGTCT</pcr_primer_p1>
		<pcr_primer_p2>TCCAGCTTGAATATCAGATTG</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>GAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTGAGAGCCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTTCAGCCAGGAGATCAGGAGGTCTAGGAGGCATCCAGATGTCTGTAAGATTGTCAGCAATCTGATATTCAAGCTGGA</canonical_amplicon>
		<polymorphic_amplicon>GAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTGAGAGCCGGGGRAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTTCAGCCAGGAGATCAGGAGGTCTAGGAGGCATCCAGATGTCTGTAAGATTGTCAGCAATCTGATATTCAAGCTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15272</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>332675</contig_pos>
        <strand>+</strand>
        <context>GATTYTGRGA[A/G]CCGGGGRAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTGAGA</left_flank>
        <right_flank>CCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAGCAATTTAGCGCTATTTTCGTTCGGAGAAGCTTCTGGCGTTTTCGAAGGTTCTAGACCTCCTGAAGCGTTATTTTTGGTCCGCTTTTCTAAAGTAGCGTCTAGACGTCGCCTAGAAAAATCTGACCATTTTTGCCCTAGACCTCCCGGACCCTAATTTTTGATTCCCCCTTTAAGGGGGGGGGGGGCGTCTTGGTGATAATAAGGCTGAGATGGAATTAGTTGTTTATTAGTTTCGAAAGAAGGCTTTAAAGCTTACGTTCTTACTCCGTCGCCTTCAATAGATGACGTTCAGCCATCTGGTGGAGCGCGGCAATTGAAAATGAGAACAAAAGGAATGGACTTTTGAAGGAAGGGGGGTATAACACAGGAGAAAGAAGAGGTCAAATATCAGCGAACGGAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTGAGAGCCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTTCAGCCAGGAGATCAGGAGGTCTAGGAGGCATCCAGATGTCTGTAAGATTGTCAGCAATCTGATATTCAAGCTGGAGACGTCAAGCTCTCCAGAAACTCGAAAGTTGGGTTTCAAGACCCTTTTCAGGTCCGGGTACTTCTGAAATAGCTAGGTTACTGTAGCCTAGTGGTCCTCACGTTTTCCGGATTTTCGAAGCTTATTCTTGATAGGACGATCTCTTTGGAACCTTGGAACCTTGGAACCTAGCCCTTTCGATCCTGAAACCGTGAATACTAGGAATCTAAGATCCTTGGAATCCTGGACACACAGACAGACGTATTCCTTGAACCTTGGAAACATTTGATCTTCAGATCCTAAGATCCCCAGGTTTAGGAATCTTTGGATCCTTAGAATCCTCGGTACCATAGCTTTATACCCATCCTTTTTGGGCTCTTTGCCACTTGTTCTCCC</canonical>
            <polymorphic>CTGAGCAATTTAGCGCTATTTTCGTTCGGAGAAGCTTCTGGCGTTTTCGAAGGTTCTAGACCTCCTGAAGCGTTATTTTTGGTCCGCTTTTCTAAAGTAGCGTCTAGACGTCGCCTAGAAAAATCTGACCATTTTTGCCCTAGACCTCCCGGACCCTAATTTTTGATTCCCCCTTTAAGGGGGGGGGGGGCGTCTTGGTGATAATAAGGCTGAGATGGAATTAGTTGTTTATTAGTTTCGAAAGAAGGCTTTAAAGCTTACGTTCTTACTCCGTCGCCTTCAATAGATGACGTTCAGCCATCTGGTGGAGCGCGGCAATTGAAAATGAGAACAAAAGGAATGGACTTTTGAAGGAAGGGGGGTATAACACAGGAGAAAGAAGAGGTCAAATATCAGCGAACGGAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTGAGARCCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTTCAGCCAGGAGATCAGGAGGTCTAGGAGGCATCCAGATGTCTGTAAGATTGTCAGCAATCTGATATTCAAGCTGGAGACGTCAAGCTCTCCAGAAACTCGAAAGTTGGGTTTCAAGACCCTTTTCAGGTCCGGGTACTTCTGAAATAGCTAGGTTACTGTAGCCTAGTGGTCCTCACGTTTTCCGGATTTTCGAAGCTTATTCTTGATAGGACGATCTCTTTGGAACCTTGGAACCTTGGAACCTAGCCCTTTCGATCCTGAAACCGTGAATACTAGGAATCTAAGATCCTTGGAATCCTGGACACACAGACAGACGTATTCCTTGAACCTTGGAAACATTTGATCTTCAGATCCTAAGATCCCCAGGTTTAGGAATCTTTGGATCCTTAGAATCCTCGGTACCATAGCTTTATACCCATCCTTTTTGGGCTCTTTGCCACTTGTTCTCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>175 161 131 72 67 63 53 51 41 39 34 34 22 21 14 14 8</canonical_bands>
                <polymorphic_bands>175 161 131 125 67 63 51 41 39 34 34 22 21 14 14 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGTTGTTTGGGACTTGTCT</pcr_primer_p1>
		<pcr_primer_p2>TCCAGCTTGAATATCAGATTG</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>GAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTGAGAGCCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTTCAGCCAGGAGATCAGGAGGTCTAGGAGGCATCCAGATGTCTGTAAGATTGTCAGCAATCTGATATTCAAGCTGGA</canonical_amplicon>
		<polymorphic_amplicon>GAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTGAGARCCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTTCAGCCAGGAGATCAGGAGGTCTAGGAGGCATCCAGATGTCTGTAAGATTGTCAGCAATCTGATATTCAAGCTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15273</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>332672</contig_pos>
        <strand>+</strand>
        <context>CTAGATTYTG[A/G]GARCCGGGGR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTG</left_flank>
        <right_flank>GAGCCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCTGAGCAATTTAGCGCTATTTTCGTTCGGAGAAGCTTCTGGCGTTTTCGAAGGTTCTAGACCTCCTGAAGCGTTATTTTTGGTCCGCTTTTCTAAAGTAGCGTCTAGACGTCGCCTAGAAAAATCTGACCATTTTTGCCCTAGACCTCCCGGACCCTAATTTTTGATTCCCCCTTTAAGGGGGGGGGGGGCGTCTTGGTGATAATAAGGCTGAGATGGAATTAGTTGTTTATTAGTTTCGAAAGAAGGCTTTAAAGCTTACGTTCTTACTCCGTCGCCTTCAATAGATGACGTTCAGCCATCTGGTGGAGCGCGGCAATTGAAAATGAGAACAAAAGGAATGGACTTTTGAAGGAAGGGGGGTATAACACAGGAGAAAGAAGAGGTCAAATATCAGCGAACGGAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTGAGAGCCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTTCAGCCAGGAGATCAGGAGGTCTAGGAGGCATCCAGATGTCTGTAAGATTGTCAGCAATCTGATATTCAAGCTGGAGACGTCAAGCTCTCCAGAAACTCGAAAGTTGGGTTTCAAGACCCTTTTCAGGTCCGGGTACTTCTGAAATAGCTAGGTTACTGTAGCCTAGTGGTCCTCACGTTTTCCGGATTTTCGAAGCTTATTCTTGATAGGACGATCTCTTTGGAACCTTGGAACCTTGGAACCTAGCCCTTTCGATCCTGAAACCGTGAATACTAGGAATCTAAGATCCTTGGAATCCTGGACACACAGACAGACGTATTCCTTGAACCTTGGAAACATTTGATCTTCAGATCCTAAGATCCCCAGGTTTAGGAATCTTTGGATCCTTAGAATCCTCGGTACCATAGCTTTATACCCATCCTTTTTGGGCTCTTTGCCACTTGTTCT</canonical>
            <polymorphic>AATCTGAGCAATTTAGCGCTATTTTCGTTCGGAGAAGCTTCTGGCGTTTTCGAAGGTTCTAGACCTCCTGAAGCGTTATTTTTGGTCCGCTTTTCTAAAGTAGCGTCTAGACGTCGCCTAGAAAAATCTGACCATTTTTGCCCTAGACCTCCCGGACCCTAATTTTTGATTCCCCCTTTAAGGGGGGGGGGGGCGTCTTGGTGATAATAAGGCTGAGATGGAATTAGTTGTTTATTAGTTTCGAAAGAAGGCTTTAAAGCTTACGTTCTTACTCCGTCGCCTTCAATAGATGACGTTCAGCCATCTGGTGGAGCGCGGCAATTGAAAATGAGAACAAAAGGAATGGACTTTTGAAGGAAGGGGGGTATAACACAGGAGAAAGAAGAGGTCAAATATCAGCGAACGGAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTGRGAGCCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTTCAGCCAGGAGATCAGGAGGTCTAGGAGGCATCCAGATGTCTGTAAGATTGTCAGCAATCTGATATTCAAGCTGGAGACGTCAAGCTCTCCAGAAACTCGAAAGTTGGGTTTCAAGACCCTTTTCAGGTCCGGGTACTTCTGAAATAGCTAGGTTACTGTAGCCTAGTGGTCCTCACGTTTTCCGGATTTTCGAAGCTTATTCTTGATAGGACGATCTCTTTGGAACCTTGGAACCTTGGAACCTAGCCCTTTCGATCCTGAAACCGTGAATACTAGGAATCTAAGATCCTTGGAATCCTGGACACACAGACAGACGTATTCCTTGAACCTTGGAAACATTTGATCTTCAGATCCTAAGATCCCCAGGTTTAGGAATCTTTGGATCCTTAGAATCCTCGGTACCATAGCTTTATACCCATCCTTTTTGGGCTCTTTGCCACTTGTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>337 212 209 73 72 61 32 4</canonical_bands>
                <polymorphic_bands>409 212 209 73 61 32 4</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>369 209 115 98 98 80 26 5</canonical_bands>
                <polymorphic_bands>484 209 98 98 80 26 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAATTGAAAATGAGAACAAA</pcr_primer_p1>
		<pcr_primer_p2>AAGACTTCTAGATCCCCTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>GCAATTGAAAATGAGAACAAAAGGAATGGACTTTTGAAGGAAGGGGGGTATAACACAGGAGAAAGAAGAGGTCAAATATCAGCGAACGGAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTGAGAGCCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTT</canonical_amplicon>
		<polymorphic_amplicon>GCAATTGAAAATGAGAACAAAAGGAATGGACTTTTGAAGGAAGGGGGGTATAACACAGGAGAAAGAAGAGGTCAAATATCAGCGAACGGAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTGRGAGCCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15274</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>332669</contig_pos>
        <strand>+</strand>
        <context>ACCCTAGATT[C/T]TGRGARCCGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATT</left_flank>
        <right_flank>TGAGAGCCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAATCTGAGCAATTTAGCGCTATTTTCGTTCGGAGAAGCTTCTGGCGTTTTCGAAGGTTCTAGACCTCCTGAAGCGTTATTTTTGGTCCGCTTTTCTAAAGTAGCGTCTAGACGTCGCCTAGAAAAATCTGACCATTTTTGCCCTAGACCTCCCGGACCCTAATTTTTGATTCCCCCTTTAAGGGGGGGGGGGGCGTCTTGGTGATAATAAGGCTGAGATGGAATTAGTTGTTTATTAGTTTCGAAAGAAGGCTTTAAAGCTTACGTTCTTACTCCGTCGCCTTCAATAGATGACGTTCAGCCATCTGGTGGAGCGCGGCAATTGAAAATGAGAACAAAAGGAATGGACTTTTGAAGGAAGGGGGGTATAACACAGGAGAAAGAAGAGGTCAAATATCAGCGAACGGAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTGAGAGCCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTTCAGCCAGGAGATCAGGAGGTCTAGGAGGCATCCAGATGTCTGTAAGATTGTCAGCAATCTGATATTCAAGCTGGAGACGTCAAGCTCTCCAGAAACTCGAAAGTTGGGTTTCAAGACCCTTTTCAGGTCCGGGTACTTCTGAAATAGCTAGGTTACTGTAGCCTAGTGGTCCTCACGTTTTCCGGATTTTCGAAGCTTATTCTTGATAGGACGATCTCTTTGGAACCTTGGAACCTTGGAACCTAGCCCTTTCGATCCTGAAACCGTGAATACTAGGAATCTAAGATCCTTGGAATCCTGGACACACAGACAGACGTATTCCTTGAACCTTGGAAACATTTGATCTTCAGATCCTAAGATCCCCAGGTTTAGGAATCTTTGGATCCTTAGAATCCTCGGTACCATAGCTTTATACCCATCCTTTTTGGGCTCTTTGCCACTTGT</canonical>
            <polymorphic>CAGAATCTGAGCAATTTAGCGCTATTTTCGTTCGGAGAAGCTTCTGGCGTTTTCGAAGGTTCTAGACCTCCTGAAGCGTTATTTTTGGTCCGCTTTTCTAAAGTAGCGTCTAGACGTCGCCTAGAAAAATCTGACCATTTTTGCCCTAGACCTCCCGGACCCTAATTTTTGATTCCCCCTTTAAGGGGGGGGGGGGCGTCTTGGTGATAATAAGGCTGAGATGGAATTAGTTGTTTATTAGTTTCGAAAGAAGGCTTTAAAGCTTACGTTCTTACTCCGTCGCCTTCAATAGATGACGTTCAGCCATCTGGTGGAGCGCGGCAATTGAAAATGAGAACAAAAGGAATGGACTTTTGAAGGAAGGGGGGTATAACACAGGAGAAAGAAGAGGTCAAATATCAGCGAACGGAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTYTGAGAGCCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTTCAGCCAGGAGATCAGGAGGTCTAGGAGGCATCCAGATGTCTGTAAGATTGTCAGCAATCTGATATTCAAGCTGGAGACGTCAAGCTCTCCAGAAACTCGAAAGTTGGGTTTCAAGACCCTTTTCAGGTCCGGGTACTTCTGAAATAGCTAGGTTACTGTAGCCTAGTGGTCCTCACGTTTTCCGGATTTTCGAAGCTTATTCTTGATAGGACGATCTCTTTGGAACCTTGGAACCTTGGAACCTAGCCCTTTCGATCCTGAAACCGTGAATACTAGGAATCTAAGATCCTTGGAATCCTGGACACACAGACAGACGTATTCCTTGAACCTTGGAAACATTTGATCTTCAGATCCTAAGATCCCCAGGTTTAGGAATCTTTGGATCCTTAGAATCCTCGGTACCATAGCTTTATACCCATCCTTTTTGGGCTCTTTGCCACTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>337 212 209 73 72 58 32 7</canonical_bands>
                <polymorphic_bands>409 212 209 73 58 32 7</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>337 325 168 80 54 17 16 3</canonical_bands>
                <polymorphic_bands>662 168 80 54 17 16 3</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>369 209 115 98 95 80 26 8</canonical_bands>
                <polymorphic_bands>484 209 98 95 80 26 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>337 325 168 80 54 17 16 3</canonical_bands>
                <polymorphic_bands>662 168 80 54 17 16 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAATTGAAAATGAGAACAAA</pcr_primer_p1>
		<pcr_primer_p2>AAGACTTCTAGATCCCCTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>GCAATTGAAAATGAGAACAAAAGGAATGGACTTTTGAAGGAAGGGGGGTATAACACAGGAGAAAGAAGAGGTCAAATATCAGCGAACGGAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTGAGAGCCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTT</canonical_amplicon>
		<polymorphic_amplicon>GCAATTGAAAATGAGAACAAAAGGAATGGACTTTTGAAGGAAGGGGGGTATAACACAGGAGAAAGAAGAGGTCAAATATCAGCGAACGGAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTYTGAGAGCCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15276</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>332601</contig_pos>
        <strand>+</strand>
        <context>ACTTGTCTCA[A/G]GGCTAATGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGAAGAGGTCAAATATCAGCGAACGGAAGTTGTTTGGGACTTGTCTCA</left_flank>
        <right_flank>GGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAG</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTACTGTGCTCGTTGCCGCATTTGCAGGTAAGCAGAACATTGGAAATTTGATCTACCGTAACCTAGCAGAATCTGAGCAATTTAGCGCTATTTTCGTTCGGAGAAGCTTCTGGCGTTTTCGAAGGTTCTAGACCTCCTGAAGCGTTATTTTTGGTCCGCTTTTCTAAAGTAGCGTCTAGACGTCGCCTAGAAAAATCTGACCATTTTTGCCCTAGACCTCCCGGACCCTAATTTTTGATTCCCCCTTTAAGGGGGGGGGGGGCGTCTTGGTGATAATAAGGCTGAGATGGAATTAGTTGTTTATTAGTTTCGAAAGAAGGCTTTAAAGCTTACGTTCTTACTCCGTCGCCTTCAATAGATGACGTTCAGCCATCTGGTGGAGCGCGGCAATTGAAAATGAGAACAAAAGGAATGGACTTTTGAAGGAAGGGGGGTATAACACAGGAGAAAGAAGAGGTCAAATATCAGCGAACGGAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTGAGAGCCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTTCAGCCAGGAGATCAGGAGGTCTAGGAGGCATCCAGATGTCTGTAAGATTGTCAGCAATCTGATATTCAAGCTGGAGACGTCAAGCTCTCCAGAAACTCGAAAGTTGGGTTTCAAGACCCTTTTCAGGTCCGGGTACTTCTGAAATAGCTAGGTTACTGTAGCCTAGTGGTCCTCACGTTTTCCGGATTTTCGAAGCTTATTCTTGATAGGACGATCTCTTTGGAACCTTGGAACCTTGGAACCTAGCCCTTTCGATCCTGAAACCGTGAATACTAGGAATCTAAGATCCTTGGAATCCTGGACACACAGACAGACGTATTCCTTGAACCTTGGAAACATTTGATCTTCAGATCCTAAGATCCCCAGGTTTAGGAAT</canonical>
            <polymorphic>GGTTACTGTGCTCGTTGCCGCATTTGCAGGTAAGCAGAACATTGGAAATTTGATCTACCGTAACCTAGCAGAATCTGAGCAATTTAGCGCTATTTTCGTTCGGAGAAGCTTCTGGCGTTTTCGAAGGTTCTAGACCTCCTGAAGCGTTATTTTTGGTCCGCTTTTCTAAAGTAGCGTCTAGACGTCGCCTAGAAAAATCTGACCATTTTTGCCCTAGACCTCCCGGACCCTAATTTTTGATTCCCCCTTTAAGGGGGGGGGGGGCGTCTTGGTGATAATAAGGCTGAGATGGAATTAGTTGTTTATTAGTTTCGAAAGAAGGCTTTAAAGCTTACGTTCTTACTCCGTCGCCTTCAATAGATGACGTTCAGCCATCTGGTGGAGCGCGGCAATTGAAAATGAGAACAAAAGGAATGGACTTTTGAAGGAAGGGGGGTATAACACAGGAGAAAGAAGAGGTCAAATATCAGCGAACGGAAGTTGTTTGGGACTTGTCTCARGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTGAGAGCCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTTCAGCCAGGAGATCAGGAGGTCTAGGAGGCATCCAGATGTCTGTAAGATTGTCAGCAATCTGATATTCAAGCTGGAGACGTCAAGCTCTCCAGAAACTCGAAAGTTGGGTTTCAAGACCCTTTTCAGGTCCGGGTACTTCTGAAATAGCTAGGTTACTGTAGCCTAGTGGTCCTCACGTTTTCCGGATTTTCGAAGCTTATTCTTGATAGGACGATCTCTTTGGAACCTTGGAACCTTGGAACCTAGCCCTTTCGATCCTGAAACCGTGAATACTAGGAATCTAAGATCCTTGGAATCCTGGACACACAGACAGACGTATTCCTTGAACCTTGGAAACATTTGATCTTCAGATCCTAAGATCCCCAGGTTTAGGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>337 212 209 75 73 72 22</canonical_bands>
                <polymorphic_bands>337 284 209 75 73 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTAGTTTCGAAAGAAGGCTTTA</pcr_primer_p1>
		<pcr_primer_p2>ACACCTAGGTCCCAGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTAGTTTCGAAAGAAGGCTTTAAAGCTTACGTTCTTACTCCGTCGCCTTCAATAGATGACGTTCAGCCATCTGGTGGAGCGCGGCAATTGAAAATGAGAACAAAAGGAATGGACTTTTGAAGGAAGGGGGGTATAACACAGGAGAAAGAAGAGGTCAAATATCAGCGAACGGAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGT</canonical_amplicon>
		<polymorphic_amplicon>ATTAGTTTCGAAAGAAGGCTTTAAAGCTTACGTTCTTACTCCGTCGCCTTCAATAGATGACGTTCAGCCATCTGGTGGAGCGCGGCAATTGAAAATGAGAACAAAAGGAATGGACTTTTGAAGGAAGGGGGGTATAACACAGGAGAAAGAAGAGGTCAAATATCAGCGAACGGAAGTTGTTTGGGACTTGTCTCARGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15277</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>332548</contig_pos>
        <strand>+</strand>
        <context>TATAACACAG[G/T]AGAAAGAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATGAGAACAAAAGGAATGGACTTTTGAAGGAAGGGGGGTATAACACAG</left_flank>
        <right_flank>AGAAAGAAGAGGTCAAATATCAGCGAACGGAAGTTGTTTGGGACTTGTCT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGACTCGAGAAGTTCTCGTTGACACGATCATTTAATGTGGAGCTCCCTCAACGGTTACTGTGCTCGTTGCCGCATTTGCAGGTAAGCAGAACATTGGAAATTTGATCTACCGTAACCTAGCAGAATCTGAGCAATTTAGCGCTATTTTCGTTCGGAGAAGCTTCTGGCGTTTTCGAAGGTTCTAGACCTCCTGAAGCGTTATTTTTGGTCCGCTTTTCTAAAGTAGCGTCTAGACGTCGCCTAGAAAAATCTGACCATTTTTGCCCTAGACCTCCCGGACCCTAATTTTTGATTCCCCCTTTAAGGGGGGGGGGGGCGTCTTGGTGATAATAAGGCTGAGATGGAATTAGTTGTTTATTAGTTTCGAAAGAAGGCTTTAAAGCTTACGTTCTTACTCCGTCGCCTTCAATAGATGACGTTCAGCCATCTGGTGGAGCGCGGCAATTGAAAATGAGAACAAAAGGAATGGACTTTTGAAGGAAGGGGGGTATAACACAGGAGAAAGAAGAGGTCAAATATCAGCGAACGGAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTGAGAGCCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTTCAGCCAGGAGATCAGGAGGTCTAGGAGGCATCCAGATGTCTGTAAGATTGTCAGCAATCTGATATTCAAGCTGGAGACGTCAAGCTCTCCAGAAACTCGAAAGTTGGGTTTCAAGACCCTTTTCAGGTCCGGGTACTTCTGAAATAGCTAGGTTACTGTAGCCTAGTGGTCCTCACGTTTTCCGGATTTTCGAAGCTTATTCTTGATAGGACGATCTCTTTGGAACCTTGGAACCTTGGAACCTAGCCCTTTCGATCCTGAAACCGTGAATACTAGGAATCTAAGATCCTTGGAATCCTGGACACACAGACAGACGTATTCCT</canonical>
            <polymorphic>ACGACTCGAGAAGTTCTCGTTGACACGATCATTTAATGTGGAGCTCCCTCAACGGTTACTGTGCTCGTTGCCGCATTTGCAGGTAAGCAGAACATTGGAAATTTGATCTACCGTAACCTAGCAGAATCTGAGCAATTTAGCGCTATTTTCGTTCGGAGAAGCTTCTGGCGTTTTCGAAGGTTCTAGACCTCCTGAAGCGTTATTTTTGGTCCGCTTTTCTAAAGTAGCGTCTAGACGTCGCCTAGAAAAATCTGACCATTTTTGCCCTAGACCTCCCGGACCCTAATTTTTGATTCCCCCTTTAAGGGGGGGGGGGGCGTCTTGGTGATAATAAGGCTGAGATGGAATTAGTTGTTTATTAGTTTCGAAAGAAGGCTTTAAAGCTTACGTTCTTACTCCGTCGCCTTCAATAGATGACGTTCAGCCATCTGGTGGAGCGCGGCAATTGAAAATGAGAACAAAAGGAATGGACTTTTGAAGGAAGGGGGGTATAACACAGKAGAAAGAAGAGGTCAAATATCAGCGAACGGAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTGAGAGCCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTTCAGCCAGGAGATCAGGAGGTCTAGGAGGCATCCAGATGTCTGTAAGATTGTCAGCAATCTGATATTCAAGCTGGAGACGTCAAGCTCTCCAGAAACTCGAAAGTTGGGTTTCAAGACCCTTTTCAGGTCCGGGTACTTCTGAAATAGCTAGGTTACTGTAGCCTAGTGGTCCTCACGTTTTCCGGATTTTCGAAGCTTATTCTTGATAGGACGATCTCTTTGGAACCTTGGAACCTTGGAACCTAGCCCTTTCGATCCTGAAACCGTGAATACTAGGAATCTAAGATCCTTGGAATCCTGGACACACAGACAGACGTATTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTAGTTTCGAAAGAAGGCTTTA</pcr_primer_p1>
		<pcr_primer_p2>ACACCTAGGTCCCAGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTAGTTTCGAAAGAAGGCTTTAAAGCTTACGTTCTTACTCCGTCGCCTTCAATAGATGACGTTCAGCCATCTGGTGGAGCGCGGCAATTGAAAATGAGAACAAAAGGAATGGACTTTTGAAGGAAGGGGGGTATAACACAGGAGAAAGAAGAGGTCAAATATCAGCGAACGGAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGT</canonical_amplicon>
		<polymorphic_amplicon>ATTAGTTTCGAAAGAAGGCTTTAAAGCTTACGTTCTTACTCCGTCGCCTTCAATAGATGACGTTCAGCCATCTGGTGGAGCGCGGCAATTGAAAATGAGAACAAAAGGAATGGACTTTTGAAGGAAGGGGGGTATAACACAGKAGAAAGAAGAGGTCAAATATCAGCGAACGGAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15278</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>333918</contig_pos>
        <strand>+</strand>
        <context>CCTTTTCAAC[C/T]TGTTGTTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTTTCGATCCTTAGCCCAAGGTCTTGGAACCGCTCGCGACCTTTTCAAC</left_flank>
        <right_flank>TGTTGTTTGATCTTCCTTAGCTAATCCAAGCTAGCTCACTCAGCTAGATT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTGATGATGGGTCCAGGGAGAGAGGGGAACAACTTTACCTTGAAAAACGTTTTGGATCCTTGGAAGGATGTTTTGGACTATTTGGAGATGTTCCGAGGGCTTGGAAAGCATCTAGATGAATCCAGGAGCTTCCAAAAGCGTCTAGAAGCATCTAGAAGGATCTGAGAGCATCTAGAGGGATCTAGAAGCATCTAGTAGCATCTAGAAGAATCCAGAAGCATCTAGAAGGATTCAAGAGCATCTGGAGGCGTTTAGACGCTTCTAGACGTGTTTGAGAGCATCTTGAAGGATCTGAAAGCACCCAGAAGGATCCAGGAGCATGTATCAGTATCTAAATGGATCTGAAGGCATATGAAAGAATCTAGAAGCCTCTAGTGCTATCTGGAAGTAGCTTAATCGCTGGAATCCTGTCAGAATCGGTCTAGGACGATTTTATGCACTATTAGCGTTTCGATCCTTAGCCCAAGGTCTTGGAACCGCTCGCGACCTTTTCAACTTGTTGTTTGATCTTCCTTAGCTAATCCAAGCTAGCTCACTCAGCTAGATTGACGTTTCGGACCATATTCCAAAGGACCGCCAGTCTCTAGAGGCTCTACCGCAACACGCCGACACTCATTACGGCTAAATGATGCGTGATATTATTGGAGTGGCTACACAGCATCAGGCAGTTGCCGTGCCACACAATACACCGTTAATTAGGATGAATAGGAAGCAGGAGTCAACAATATAAAAATAGATCAAAACCCCTGTTGGGGAGGATTGTTTTGATAGGGTGGCACTCATTCTGGATGGGTATAGAGGGATGGAACCTTGGAATCTTGGAATCTAAGATCCTAGGGATCCTGGAACCTAGACCGTTAGATCCTGGACCGTTGGAACTTCGGATCCTCAGATCTTTGGGTCTTTGGCACCTTGAAACCTTGGAACCTTGAGACCTTGGAACCTGGGAAACTTGGAATCCTGGAACCTACTCCTTTAGATCCTCGACCTCTGGAAC</canonical>
            <polymorphic>ATTTTGATGATGGGTCCAGGGAGAGAGGGGAACAACTTTACCTTGAAAAACGTTTTGGATCCTTGGAAGGATGTTTTGGACTATTTGGAGATGTTCCGAGGGCTTGGAAAGCATCTAGATGAATCCAGGAGCTTCCAAAAGCGTCTAGAAGCATCTAGAAGGATCTGAGAGCATCTAGAGGGATCTAGAAGCATCTAGTAGCATCTAGAAGAATCCAGAAGCATCTAGAAGGATTCAAGAGCATCTGGAGGCGTTTAGACGCTTCTAGACGTGTTTGAGAGCATCTTGAAGGATCTGAAAGCACCCAGAAGGATCCAGGAGCATGTATCAGTATCTAAATGGATCTGAAGGCATATGAAAGAATCTAGAAGCCTCTAGTGCTATCTGGAAGTAGCTTAATCGCTGGAATCCTGTCAGAATCGGTCTAGGACGATTTTATGCACTATTAGCGTTTCGATCCTTAGCCCAAGGTCTTGGAACCGCTCGCGACCTTTTCAACYTGTTGTTTGATCTTCCTTAGCTAATCCAAGCTAGCTCACTCAGCTAGATTGACGTTTCGGACCATATTCCAAAGGACCGCCAGTCTCTAGAGGCTCTACCGCAACACGCCGACACTCATTACGGCTAAATGATGCGTGATATTATTGGAGTGGCTACACAGCATCAGGCAGTTGCCGTGCCACACAATACACCGTTAATTAGGATGAATAGGAAGCAGGAGTCAACAATATAAAAATAGATCAAAACCCCTGTTGGGGAGGATTGTTTTGATAGGGTGGCACTCATTCTGGATGGGTATAGAGGGATGGAACCTTGGAATCTTGGAATCTAAGATCCTAGGGATCCTGGAACCTAGACCGTTAGATCCTGGACCGTTGGAACTTCGGATCCTCAGATCTTTGGGTCTTTGGCACCTTGAAACCTTGGAACCTTGAGACCTTGGAACCTGGGAAACTTGGAATCCTGGAACCTACTCCTTTAGATCCTCGACCTCTGGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCCTGTCAGAATCGGTCTA</pcr_primer_p1>
		<pcr_primer_p2>AATAATATCACGCATCATTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AATCCTGTCAGAATCGGTCTAGGACGATTTTATGCACTATTAGCGTTTCGATCCTTAGCCCAAGGTCTTGGAACCGCTCGCGACCTTTTCAACTTGTTGTTTGATCTTCCTTAGCTAATCCAAGCTAGCTCACTCAGCTAGATTGACGTTTCGGACCATATTCCAAAGGACCGCCAGTCTCTAGAGGCTCTACCGCAACACGCCGACACTCATTACGGCTAAATGATGCGTGATATTATT</canonical_amplicon>
		<polymorphic_amplicon>AATCCTGTCAGAATCGGTCTAGGACGATTTTATGCACTATTAGCGTTTCGATCCTTAGCCCAAGGTCTTGGAACCGCTCGCGACCTTTTCAACYTGTTGTTTGATCTTCCTTAGCTAATCCAAGCTAGCTCACTCAGCTAGATTGACGTTTCGGACCATATTCCAAAGGACCGCCAGTCTCTAGAGGCTCTACCGCAACACGCCGACACTCATTACGGCTAAATGATGCGTGATATTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15279</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>333942</contig_pos>
        <strand>+</strand>
        <context>TCCTTAGCTA[A/G]TCCAAGCTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGGAACCGCTCGCGACCTTTTCAACTTGTTGTTTGATCTTCCTTAGCTA</left_flank>
        <right_flank>TCCAAGCTAGCTCACTCAGCTAGATTGACGTTTCGGACCATATTCCAAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGGGAACAACTTTACCTTGAAAAACGTTTTGGATCCTTGGAAGGATGTTTTGGACTATTTGGAGATGTTCCGAGGGCTTGGAAAGCATCTAGATGAATCCAGGAGCTTCCAAAAGCGTCTAGAAGCATCTAGAAGGATCTGAGAGCATCTAGAGGGATCTAGAAGCATCTAGTAGCATCTAGAAGAATCCAGAAGCATCTAGAAGGATTCAAGAGCATCTGGAGGCGTTTAGACGCTTCTAGACGTGTTTGAGAGCATCTTGAAGGATCTGAAAGCACCCAGAAGGATCCAGGAGCATGTATCAGTATCTAAATGGATCTGAAGGCATATGAAAGAATCTAGAAGCCTCTAGTGCTATCTGGAAGTAGCTTAATCGCTGGAATCCTGTCAGAATCGGTCTAGGACGATTTTATGCACTATTAGCGTTTCGATCCTTAGCCCAAGGTCTTGGAACCGCTCGCGACCTTTTCAACTTGTTGTTTGATCTTCCTTAGCTAATCCAAGCTAGCTCACTCAGCTAGATTGACGTTTCGGACCATATTCCAAAGGACCGCCAGTCTCTAGAGGCTCTACCGCAACACGCCGACACTCATTACGGCTAAATGATGCGTGATATTATTGGAGTGGCTACACAGCATCAGGCAGTTGCCGTGCCACACAATACACCGTTAATTAGGATGAATAGGAAGCAGGAGTCAACAATATAAAAATAGATCAAAACCCCTGTTGGGGAGGATTGTTTTGATAGGGTGGCACTCATTCTGGATGGGTATAGAGGGATGGAACCTTGGAATCTTGGAATCTAAGATCCTAGGGATCCTGGAACCTAGACCGTTAGATCCTGGACCGTTGGAACTTCGGATCCTCAGATCTTTGGGTCTTTGGCACCTTGAAACCTTGGAACCTTGAGACCTTGGAACCTGGGAAACTTGGAATCCTGGAACCTACTCCTTTAGATCCTCGACCTCTGGAACCTGGTAACCTAGGTACCTTGGAAC</canonical>
            <polymorphic>GAGGGGAACAACTTTACCTTGAAAAACGTTTTGGATCCTTGGAAGGATGTTTTGGACTATTTGGAGATGTTCCGAGGGCTTGGAAAGCATCTAGATGAATCCAGGAGCTTCCAAAAGCGTCTAGAAGCATCTAGAAGGATCTGAGAGCATCTAGAGGGATCTAGAAGCATCTAGTAGCATCTAGAAGAATCCAGAAGCATCTAGAAGGATTCAAGAGCATCTGGAGGCGTTTAGACGCTTCTAGACGTGTTTGAGAGCATCTTGAAGGATCTGAAAGCACCCAGAAGGATCCAGGAGCATGTATCAGTATCTAAATGGATCTGAAGGCATATGAAAGAATCTAGAAGCCTCTAGTGCTATCTGGAAGTAGCTTAATCGCTGGAATCCTGTCAGAATCGGTCTAGGACGATTTTATGCACTATTAGCGTTTCGATCCTTAGCCCAAGGTCTTGGAACCGCTCGCGACCTTTTCAACTTGTTGTTTGATCTTCCTTAGCTARTCCAAGCTAGCTCACTCAGCTAGATTGACGTTTCGGACCATATTCCAAAGGACCGCCAGTCTCTAGAGGCTCTACCGCAACACGCCGACACTCATTACGGCTAAATGATGCGTGATATTATTGGAGTGGCTACACAGCATCAGGCAGTTGCCGTGCCACACAATACACCGTTAATTAGGATGAATAGGAAGCAGGAGTCAACAATATAAAAATAGATCAAAACCCCTGTTGGGGAGGATTGTTTTGATAGGGTGGCACTCATTCTGGATGGGTATAGAGGGATGGAACCTTGGAATCTTGGAATCTAAGATCCTAGGGATCCTGGAACCTAGACCGTTAGATCCTGGACCGTTGGAACTTCGGATCCTCAGATCTTTGGGTCTTTGGCACCTTGAAACCTTGGAACCTTGAGACCTTGGAACCTGGGAAACTTGGAATCCTGGAACCTACTCCTTTAGATCCTCGACCTCTGGAACCTGGTAACCTAGGTACCTTGGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCCTGTCAGAATCGGTCTA</pcr_primer_p1>
		<pcr_primer_p2>AATAATATCACGCATCATTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AATCCTGTCAGAATCGGTCTAGGACGATTTTATGCACTATTAGCGTTTCGATCCTTAGCCCAAGGTCTTGGAACCGCTCGCGACCTTTTCAACTTGTTGTTTGATCTTCCTTAGCTAATCCAAGCTAGCTCACTCAGCTAGATTGACGTTTCGGACCATATTCCAAAGGACCGCCAGTCTCTAGAGGCTCTACCGCAACACGCCGACACTCATTACGGCTAAATGATGCGTGATATTATT</canonical_amplicon>
		<polymorphic_amplicon>AATCCTGTCAGAATCGGTCTAGGACGATTTTATGCACTATTAGCGTTTCGATCCTTAGCCCAAGGTCTTGGAACCGCTCGCGACCTTTTCAACTTGTTGTTTGATCTTCCTTAGCTARTCCAAGCTAGCTCACTCAGCTAGATTGACGTTTCGGACCATATTCCAAAGGACCGCCAGTCTCTAGAGGCTCTACCGCAACACGCCGACACTCATTACGGCTAAATGATGCGTGATATTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15280</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>334071</contig_pos>
        <strand>+</strand>
        <context>TATTGGAGTG[G/T]CTACACAGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACACGCCGACACTCATTACGGCTAAATGATGCGTGATATTATTGGAGTG</left_flank>
        <right_flank>CTACACAGCATCAGGCAGTTGCCGTGCCACACAATACACCGTTAATTAGG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTAGAAGGATCTGAGAGCATCTAGAGGGATCTAGAAGCATCTAGTAGCATCTAGAAGAATCCAGAAGCATCTAGAAGGATTCAAGAGCATCTGGAGGCGTTTAGACGCTTCTAGACGTGTTTGAGAGCATCTTGAAGGATCTGAAAGCACCCAGAAGGATCCAGGAGCATGTATCAGTATCTAAATGGATCTGAAGGCATATGAAAGAATCTAGAAGCCTCTAGTGCTATCTGGAAGTAGCTTAATCGCTGGAATCCTGTCAGAATCGGTCTAGGACGATTTTATGCACTATTAGCGTTTCGATCCTTAGCCCAAGGTCTTGGAACCGCTCGCGACCTTTTCAACTTGTTGTTTGATCTTCCTTAGCTAATCCAAGCTAGCTCACTCAGCTAGATTGACGTTTCGGACCATATTCCAAAGGACCGCCAGTCTCTAGAGGCTCTACCGCAACACGCCGACACTCATTACGGCTAAATGATGCGTGATATTATTGGAGTGGCTACACAGCATCAGGCAGTTGCCGTGCCACACAATACACCGTTAATTAGGATGAATAGGAAGCAGGAGTCAACAATATAAAAATAGATCAAAACCCCTGTTGGGGAGGATTGTTTTGATAGGGTGGCACTCATTCTGGATGGGTATAGAGGGATGGAACCTTGGAATCTTGGAATCTAAGATCCTAGGGATCCTGGAACCTAGACCGTTAGATCCTGGACCGTTGGAACTTCGGATCCTCAGATCTTTGGGTCTTTGGCACCTTGAAACCTTGGAACCTTGAGACCTTGGAACCTGGGAAACTTGGAATCCTGGAACCTACTCCTTTAGATCCTCGACCTCTGGAACCTGGTAACCTAGGTACCTTGGAACCTTGGAACCTTGGAACCTAGCCCTATAGAACCTGGAACCTTGGAATCTAGAAATCCAAGATCCTCGGATTCCTAGACACACAGACAGACAAATTCCTTATCTCGGCTCTCAATCTAGTGCTCAATCTAG</canonical>
            <polymorphic>TCTAGAAGGATCTGAGAGCATCTAGAGGGATCTAGAAGCATCTAGTAGCATCTAGAAGAATCCAGAAGCATCTAGAAGGATTCAAGAGCATCTGGAGGCGTTTAGACGCTTCTAGACGTGTTTGAGAGCATCTTGAAGGATCTGAAAGCACCCAGAAGGATCCAGGAGCATGTATCAGTATCTAAATGGATCTGAAGGCATATGAAAGAATCTAGAAGCCTCTAGTGCTATCTGGAAGTAGCTTAATCGCTGGAATCCTGTCAGAATCGGTCTAGGACGATTTTATGCACTATTAGCGTTTCGATCCTTAGCCCAAGGTCTTGGAACCGCTCGCGACCTTTTCAACTTGTTGTTTGATCTTCCTTAGCTAATCCAAGCTAGCTCACTCAGCTAGATTGACGTTTCGGACCATATTCCAAAGGACCGCCAGTCTCTAGAGGCTCTACCGCAACACGCCGACACTCATTACGGCTAAATGATGCGTGATATTATTGGAGTGKCTACACAGCATCAGGCAGTTGCCGTGCCACACAATACACCGTTAATTAGGATGAATAGGAAGCAGGAGTCAACAATATAAAAATAGATCAAAACCCCTGTTGGGGAGGATTGTTTTGATAGGGTGGCACTCATTCTGGATGGGTATAGAGGGATGGAACCTTGGAATCTTGGAATCTAAGATCCTAGGGATCCTGGAACCTAGACCGTTAGATCCTGGACCGTTGGAACTTCGGATCCTCAGATCTTTGGGTCTTTGGCACCTTGAAACCTTGGAACCTTGAGACCTTGGAACCTGGGAAACTTGGAATCCTGGAACCTACTCCTTTAGATCCTCGACCTCTGGAACCTGGTAACCTAGGTACCTTGGAACCTTGGAACCTTGGAACCTAGCCCTATAGAACCTGGAACCTTGGAATCTAGAAATCCAAGATCCTCGGATTCCTAGACACACAGACAGACAAATTCCTTATCTCGGCTCTCAATCTAGTGCTCAATCTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>391 218 85 70 56 50 31 29 24 23 10 9 4</canonical_bands>
                <polymorphic_bands>420 218 85 70 56 50 31 24 23 10 9 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTGTTTGATCTTCCTTAGC</pcr_primer_p1>
		<pcr_primer_p2>CAGGGGTTTTGATCTATTTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TGTTGTTTGATCTTCCTTAGCTAATCCAAGCTAGCTCACTCAGCTAGATTGACGTTTCGGACCATATTCCAAAGGACCGCCAGTCTCTAGAGGCTCTACCGCAACACGCCGACACTCATTACGGCTAAATGATGCGTGATATTATTGGAGTGGCTACACAGCATCAGGCAGTTGCCGTGCCACACAATACACCGTTAATTAGGATGAATAGGAAGCAGGAGTCAACAATATAAAAATAGATCAAAACCCCTG</canonical_amplicon>
		<polymorphic_amplicon>TGTTGTTTGATCTTCCTTAGCTAATCCAAGCTAGCTCACTCAGCTAGATTGACGTTTCGGACCATATTCCAAAGGACCGCCAGTCTCTAGAGGCTCTACCGCAACACGCCGACACTCATTACGGCTAAATGATGCGTGATATTATTGGAGTGKCTACACAGCATCAGGCAGTTGCCGTGCCACACAATACACCGTTAATTAGGATGAATAGGAAGCAGGAGTCAACAATATAAAAATAGATCAAAACCCCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15281</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>336044</contig_pos>
        <strand>+</strand>
        <context>ATCGTAAGAT[C/T]GGTAGAATCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCTTTGTACATACTTCCTTGAACTCCTTGATCCTTTAAAATCGTAAGAT</left_flank>
        <right_flank>GGTAGAATCATAATTGCCTTGTTCCTTTAAAACTGTCAGAATCGTCTAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCAGCAGTTGGACGCTGAAAACAACCGAATCCAGGAGTCGATCTCCCTTCCGGATACTGTAGTCCACGTGAATTTGGCTGGAAATTTGCTGCGAAAGATTCCAGACGCCGTGTCGACGTTGCCGAGTCTTGTAGCGTTGAATGTGTCAAGAAATGAGATTGAAAGTGGCAATTCGTCGGTGCTAGGTGAGTTTTTTGCTTTAATTGGGGGGAGGGGGTGGGTCTAATTAATTAACTATACTAACTATCTTTTCAGCCTCATCTGAGCTGGAAATGCTCGACGCATCGTATAACAATTTGGACCAGCTTCCCACAGAGTGGCTTCAAAACTGCGACAAGCGGATTGCTCATCTTCATCTGGAGCATAATCGGATACAGGAGATTCCAGGAGGTGTTCTGTCGAATGCCACAAATTTGCAGACGGTAAGAGCGACTTTCTGTGCTTTTTGGCTTTGTACATACTTCCTTGAACTCCTTGATCCTTTAAAATCGTAAGATCGGTAGAATCATAATTGCCTTGTTCCTTTAAAACTGTCAGAATCGTCTAAGATCCTTAGATCTCTGGCTCTTTAGATTCTTGGAATCTAGACAACTAGGATCCTTGTAATCCTAAGCTCCGGACACACAGACAGACGCATAAGAGCCGTGATCCTTTAAAACCATCAGAATCGCCTATACGGTCTTCCCATTCATGATCATCGCGTGTCAGGATCTTCTCCTTAGTCTCAATTTGTGATTTTTGGTCTTGATGAATCTTTAAGATGGTCAGAACCGTCCAGGATCCTTGAAATCTTAGAATCGAGTCTTGGAACTTGACGCTTTCAGATCCTCAGATCAGATCAGATGGAATCTAACATCCTCAGTTCCAGGAGTCTACGATCCCTCTAATCTTAAGCTCCCGGACACATAGACAGACCCATGAGAGCCTTCAGAATCGTCTTCGATCGCGTGTCAGTAGACAAACATGTATATAGTTCATTGACCTTCTTCTTGAGTATC</canonical>
            <polymorphic>CTTCAGCAGTTGGACGCTGAAAACAACCGAATCCAGGAGTCGATCTCCCTTCCGGATACTGTAGTCCACGTGAATTTGGCTGGAAATTTGCTGCGAAAGATTCCAGACGCCGTGTCGACGTTGCCGAGTCTTGTAGCGTTGAATGTGTCAAGAAATGAGATTGAAAGTGGCAATTCGTCGGTGCTAGGTGAGTTTTTTGCTTTAATTGGGGGGAGGGGGTGGGTCTAATTAATTAACTATACTAACTATCTTTTCAGCCTCATCTGAGCTGGAAATGCTCGACGCATCGTATAACAATTTGGACCAGCTTCCCACAGAGTGGCTTCAAAACTGCGACAAGCGGATTGCTCATCTTCATCTGGAGCATAATCGGATACAGGAGATTCCAGGAGGTGTTCTGTCGAATGCCACAAATTTGCAGACGGTAAGAGCGACTTTCTGTGCTTTTTGGCTTTGTACATACTTCCTTGAACTCCTTGATCCTTTAAAATCGTAAGATYGGTAGAATCATAATTGCCTTGTTCCTTTAAAACTGTCAGAATCGTCTAAGATCCTTAGATCTCTGGCTCTTTAGATTCTTGGAATCTAGACAACTAGGATCCTTGTAATCCTAAGCTCCGGACACACAGACAGACGCATAAGAGCCGTGATCCTTTAAAACCATCAGAATCGCCTATACGGTCTTCCCATTCATGATCATCGCGTGTCAGGATCTTCTCCTTAGTCTCAATTTGTGATTTTTGGTCTTGATGAATCTTTAAGATGGTCAGAACCGTCCAGGATCCTTGAAATCTTAGAATCGAGTCTTGGAACTTGACGCTTTCAGATCCTCAGATCAGATCAGATGGAATCTAACATCCTCAGTTCCAGGAGTCTACGATCCCTCTAATCTTAAGCTCCCGGACACATAGACAGACCCATGAGAGCCTTCAGAATCGTCTTCGATCGCGTGTCAGTAGACAAACATGTATATAGTTCATTGACCTTCTTCTTGAGTATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>437 70 65 57 53 51 46 45 41 40 40 18 16 8 8 5</canonical_bands>
                <polymorphic_bands>437 71 70 65 57 51 46 45 41 40 40 16 8 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATCTTCATCTGGAGCATAAT</pcr_primer_p1>
		<pcr_primer_p2>TCCTAGTTGTCTAGATTCCAAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATCTTCATCTGGAGCATAATCGGATACAGGAGATTCCAGGAGGTGTTCTGTCGAATGCCACAAATTTGCAGACGGTAAGAGCGACTTTCTGTGCTTTTTGGCTTTGTACATACTTCCTTGAACTCCTTGATCCTTTAAAATCGTAAGATCGGTAGAATCATAATTGCCTTGTTCCTTTAAAACTGTCAGAATCGTCTAAGATCCTTAGATCTCTGGCTCTTTAGATTCTTGGAATCTAGACAACTAGGA</canonical_amplicon>
		<polymorphic_amplicon>CATCTTCATCTGGAGCATAATCGGATACAGGAGATTCCAGGAGGTGTTCTGTCGAATGCCACAAATTTGCAGACGGTAAGAGCGACTTTCTGTGCTTTTTGGCTTTGTACATACTTCCTTGAACTCCTTGATCCTTTAAAATCGTAAGATYGGTAGAATCATAATTGCCTTGTTCCTTTAAAACTGTCAGAATCGTCTAAGATCCTTAGATCTCTGGCTCTTTAGATTCTTGGAATCTAGACAACTAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15282</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>335863</contig_pos>
        <strand>+</strand>
        <context>TTCCCACAGA[A/G]TGGCTTCAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGGAAATGCTCGACGCATCGTATAACAATTTGGACCAGCTTCCCACAGA</left_flank>
        <right_flank>TGGCTTCAAAACTGCGACAAGCGGATTGCTCATCTTCATCTGGAGCATAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGACGATTCTGAAACAACTATTCGACCATTTTTAGCTAATTTTTTGAAGCGATTTTCAGCCAATTTTAAATTCCACCCCTTTTCCAGACAATTCCTGCGCGGCGTTCCAGCGATTCGACAAATCTCGCTGGCTCACAACTCGATTGCTCAGCTCGACGCCTCGACAGCCACCCCGTTCCTTCAGCAGTTGGACGCTGAAAACAACCGAATCCAGGAGTCGATCTCCCTTCCGGATACTGTAGTCCACGTGAATTTGGCTGGAAATTTGCTGCGAAAGATTCCAGACGCCGTGTCGACGTTGCCGAGTCTTGTAGCGTTGAATGTGTCAAGAAATGAGATTGAAAGTGGCAATTCGTCGGTGCTAGGTGAGTTTTTTGCTTTAATTGGGGGGAGGGGGTGGGTCTAATTAATTAACTATACTAACTATCTTTTCAGCCTCATCTGAGCTGGAAATGCTCGACGCATCGTATAACAATTTGGACCAGCTTCCCACAGAGTGGCTTCAAAACTGCGACAAGCGGATTGCTCATCTTCATCTGGAGCATAATCGGATACAGGAGATTCCAGGAGGTGTTCTGTCGAATGCCACAAATTTGCAGACGGTAAGAGCGACTTTCTGTGCTTTTTGGCTTTGTACATACTTCCTTGAACTCCTTGATCCTTTAAAATCGTAAGATCGGTAGAATCATAATTGCCTTGTTCCTTTAAAACTGTCAGAATCGTCTAAGATCCTTAGATCTCTGGCTCTTTAGATTCTTGGAATCTAGACAACTAGGATCCTTGTAATCCTAAGCTCCGGACACACAGACAGACGCATAAGAGCCGTGATCCTTTAAAACCATCAGAATCGCCTATACGGTCTTCCCATTCATGATCATCGCGTGTCAGGATCTTCTCCTTAGTCTCAATTTGTGATTTTTGGTCTTGATGAATCTTTAAGATGGTCAGAACCGTCCAGGATCCTTGAAATCTTAGAATCGAGTCTTGGAACTTGACG</canonical>
            <polymorphic>TTTTGACGATTCTGAAACAACTATTCGACCATTTTTAGCTAATTTTTTGAAGCGATTTTCAGCCAATTTTAAATTCCACCCCTTTTCCAGACAATTCCTGCGCGGCGTTCCAGCGATTCGACAAATCTCGCTGGCTCACAACTCGATTGCTCAGCTCGACGCCTCGACAGCCACCCCGTTCCTTCAGCAGTTGGACGCTGAAAACAACCGAATCCAGGAGTCGATCTCCCTTCCGGATACTGTAGTCCACGTGAATTTGGCTGGAAATTTGCTGCGAAAGATTCCAGACGCCGTGTCGACGTTGCCGAGTCTTGTAGCGTTGAATGTGTCAAGAAATGAGATTGAAAGTGGCAATTCGTCGGTGCTAGGTGAGTTTTTTGCTTTAATTGGGGGGAGGGGGTGGGTCTAATTAATTAACTATACTAACTATCTTTTCAGCCTCATCTGAGCTGGAAATGCTCGACGCATCGTATAACAATTTGGACCAGCTTCCCACAGARTGGCTTCAAAACTGCGACAAGCGGATTGCTCATCTTCATCTGGAGCATAATCGGATACAGGAGATTCCAGGAGGTGTTCTGTCGAATGCCACAAATTTGCAGACGGTAAGAGCGACTTTCTGTGCTTTTTGGCTTTGTACATACTTCCTTGAACTCCTTGATCCTTTAAAATCGTAAGATCGGTAGAATCATAATTGCCTTGTTCCTTTAAAACTGTCAGAATCGTCTAAGATCCTTAGATCTCTGGCTCTTTAGATTCTTGGAATCTAGACAACTAGGATCCTTGTAATCCTAAGCTCCGGACACACAGACAGACGCATAAGAGCCGTGATCCTTTAAAACCATCAGAATCGCCTATACGGTCTTCCCATTCATGATCATCGCGTGTCAGGATCTTCTCCTTAGTCTCAATTTGTGATTTTTGGTCTTGATGAATCTTTAAGATGGTCAGAACCGTCCAGGATCCTTGAAATCTTAGAATCGAGTCTTGGAACTTGACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACNNNGTG</site>
                <isoschizomers>
                    <enzyme>AdeI</enzyme>
                    <enzyme>DraIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>181 93 83 78 76 74 60 57 42 35 33 33 31 30 23 22 15 14 7 7 4 2</canonical_bands>
                <polymorphic_bands>181 93 83 81 78 76 60 57 42 35 33 33 31 30 23 22 15 14 7 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAACTATCTTTTCAGCCTCATCT</pcr_primer_p1>
		<pcr_primer_p2>GATTTTAAAGGATCAAGGAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAACTATCTTTTCAGCCTCATCTGAGCTGGAAATGCTCGACGCATCGTATAACAATTTGGACCAGCTTCCCACAGAGTGGCTTCAAAACTGCGACAAGCGGATTGCTCATCTTCATCTGGAGCATAATCGGATACAGGAGATTCCAGGAGGTGTTCTGTCGAATGCCACAAATTTGCAGACGGTAAGAGCGACTTTCTGTGCTTTTTGGCTTTGTACATACTTCCTTGAACTCCTTGATCCTTTAAAATC</canonical_amplicon>
		<polymorphic_amplicon>TAACTATCTTTTCAGCCTCATCTGAGCTGGAAATGCTCGACGCATCGTATAACAATTTGGACCAGCTTCCCACAGARTGGCTTCAAAACTGCGACAAGCGGATTGCTCATCTTCATCTGGAGCATAATCGGATACAGGAGATTCCAGGAGGTGTTCTGTCGAATGCCACAAATTTGCAGACGGTAAGAGCGACTTTCTGTGCTTTTTGGCTTTGTACATACTTCCTTGAACTCCTTGATCCTTTAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15283</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>335638</contig_pos>
        <strand>+</strand>
        <context>AAATTTGCTG[A/C]GAAAGATTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTCCCTTCCGGATACTGTAGTCCACGTGAATTTGGCTGGAAATTTGCTG</left_flank>
        <right_flank>GAAAGATTCCAGACGCCGTGTCGACGTTGCCGAGTCTTGTAGCGTTGAAT</right_flank>
        <qual_score>134</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTCCTAGAGCCTTGGAGATCTTAAACGTTTTGAAAATTTTTGAATTCCCGCCAAATCGAATTTCCAGGTCCTCAACCTATCTACAAATGGGCTTCCAACCCTACGACGCGAGGAGACTTGTGTGGCCCAGCAATTGCTCATCGTCGACGTCTCCAGGAATCAGTTGACGAGTATTGAGTGAGTTTTTGATGAATTTAGGTTTTCTAGGCCAATTTCAGCCAATTTTTGACGATTCTGAAACAACTATTCGACCATTTTTAGCTAATTTTTTGAAGCGATTTTCAGCCAATTTTAAATTCCACCCCTTTTCCAGACAATTCCTGCGCGGCGTTCCAGCGATTCGACAAATCTCGCTGGCTCACAACTCGATTGCTCAGCTCGACGCCTCGACAGCCACCCCGTTCCTTCAGCAGTTGGACGCTGAAAACAACCGAATCCAGGAGTCGATCTCCCTTCCGGATACTGTAGTCCACGTGAATTTGGCTGGAAATTTGCTGCGAAAGATTCCAGACGCCGTGTCGACGTTGCCGAGTCTTGTAGCGTTGAATGTGTCAAGAAATGAGATTGAAAGTGGCAATTCGTCGGTGCTAGGTGAGTTTTTTGCTTTAATTGGGGGGAGGGGGTGGGTCTAATTAATTAACTATACTAACTATCTTTTCAGCCTCATCTGAGCTGGAAATGCTCGACGCATCGTATAACAATTTGGACCAGCTTCCCACAGAGTGGCTTCAAAACTGCGACAAGCGGATTGCTCATCTTCATCTGGAGCATAATCGGATACAGGAGATTCCAGGAGGTGTTCTGTCGAATGCCACAAATTTGCAGACGGTAAGAGCGACTTTCTGTGCTTTTTGGCTTTGTACATACTTCCTTGAACTCCTTGATCCTTTAAAATCGTAAGATCGGTAGAATCATAATTGCCTTGTTCCTTTAAAACTGTCAGAATCGTCTAAGATCCTTAGATCTCTGGCTCTTTAGATTCTTGGAATCTAGACAAC</canonical>
            <polymorphic>GGTTCCTAGAGCCTTGGAGATCTTAAACGTTTTGAAAATTTTTGAATTCCCGCCAAATCGAATTTCCAGGTCCTCAACCTATCTACAAATGGGCTTCCAACCCTACGACGCGAGGAGACTTGTGTGGCCCAGCAATTGCTCATCGTCGACGTCTCCAGGAATCAGTTGACGAGTATTGAGTGAGTTTTTGATGAATTTAGGTTTTCTAGGCCAATTTCAGCCAATTTTTGACGATTCTGAAACAACTATTCGACCATTTTTAGCTAATTTTTTGAAGCGATTTTCAGCCAATTTTAAATTCCACCCCTTTTCCAGACAATTCCTGCGCGGCGTTCCAGCGATTCGACAAATCTCGCTGGCTCACAACTCGATTGCTCAGCTCGACGCCTCGACAGCCACCCCGTTCCTTCAGCAGTTGGACGCTGAAAACAACCGAATCCAGGAGTCGATCTCCCTTCCGGATACTGTAGTCCACGTGAATTTGGCTGGAAATTTGCTGMGAAAGATTCCAGACGCCGTGTCGACGTTGCCGAGTCTTGTAGCGTTGAATGTGTCAAGAAATGAGATTGAAAGTGGCAATTCGTCGGTGCTAGGTGAGTTTTTTGCTTTAATTGGGGGGAGGGGGTGGGTCTAATTAATTAACTATACTAACTATCTTTTCAGCCTCATCTGAGCTGGAAATGCTCGACGCATCGTATAACAATTTGGACCAGCTTCCCACAGAGTGGCTTCAAAACTGCGACAAGCGGATTGCTCATCTTCATCTGGAGCATAATCGGATACAGGAGATTCCAGGAGGTGTTCTGTCGAATGCCACAAATTTGCAGACGGTAAGAGCGACTTTCTGTGCTTTTTGGCTTTGTACATACTTCCTTGAACTCCTTGATCCTTTAAAATCGTAAGATCGGTAGAATCATAATTGCCTTGTTCCTTTAAAACTGTCAGAATCGTCTAAGATCCTTAGATCTCTGGCTCTTTAGATTCTTGGAATCTAGACAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>501 330 169</canonical_bands>
                <polymorphic_bands>670 330</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTTGACGAGTATTGAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>CACATTCAACGCTACAAGACT</pcr_primer_p2>
		<pcr_amplicon_size>391</pcr_amplicon_size>
		<canonical_amplicon>CAGTTGACGAGTATTGAGTGAGTTTTTGATGAATTTAGGTTTTCTAGGCCAATTTCAGCCAATTTTTGACGATTCTGAAACAACTATTCGACCATTTTTAGCTAATTTTTTGAAGCGATTTTCAGCCAATTTTAAATTCCACCCCTTTTCCAGACAATTCCTGCGCGGCGTTCCAGCGATTCGACAAATCTCGCTGGCTCACAACTCGATTGCTCAGCTCGACGCCTCGACAGCCACCCCGTTCCTTCAGCAGTTGGACGCTGAAAACAACCGAATCCAGGAGTCGATCTCCCTTCCGGATACTGTAGTCCACGTGAATTTGGCTGGAAATTTGCTGCGAAAGATTCCAGACGCCGTGTCGACGTTGCCGAGTCTTGTAGCGTTGAATGTG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTGACGAGTATTGAGTGAGTTTTTGATGAATTTAGGTTTTCTAGGCCAATTTCAGCCAATTTTTGACGATTCTGAAACAACTATTCGACCATTTTTAGCTAATTTTTTGAAGCGATTTTCAGCCAATTTTAAATTCCACCCCTTTTCCAGACAATTCCTGCGCGGCGTTCCAGCGATTCGACAAATCTCGCTGGCTCACAACTCGATTGCTCAGCTCGACGCCTCGACAGCCACCCCGTTCCTTCAGCAGTTGGACGCTGAAAACAACCGAATCCAGGAGTCGATCTCCCTTCCGGATACTGTAGTCCACGTGAATTTGGCTGGAAATTTGCTGMGAAAGATTCCAGACGCCGTGTCGACGTTGCCGAGTCTTGTAGCGTTGAATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15284</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>355479</contig_pos>
        <strand>+</strand>
        <context>CCCAGTATAA[A/G]AAACAATTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAGGGATTTTCGCGAAATTTCTGCGAAAAACCCATATTTCCCAGTATAA</left_flank>
        <right_flank>AAACAATTTCTTACCCCTCTCTCACTGGCAACTCTGTCTTTCGGATGATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGTCGGGTTCTGAAATGTCGTGGTTCTGAAACGTGTGGTCCTGAAACGTCCCAGAGCCTCGAATTCAGACGTCTTCGGTTGATTTTCCCTTGAAAATTTCCCTGAAAATTGCTGGAAAAAATGGTTTTAAAAATTCAATTTTTTCACAAATAACGACAAAATCAACAAAAAAAAGCGAAAATTTAAAAAAAATCAATAATTATTCGGCCATCTCGACGTCTTCTTCCTCCTCCTCCTCGCCATCGTTTCCAGCCAGCTCCTCTTGCATTTTTCTGAAATTCTCCCGAGCGTCGTGCGTCATCTTTTTGTACATCTTCTTCGCCTTCTTCTTCGTAATGTACTGTGCAGTGGTGCCACGTTTGCCGGTTGGAGCTTCCAGAATCTTCTTTCTGCAAAAAATGGAATTTTTCCAACTTTTTCGAGTTTCTGGGATAAATTAGGCCAAAAAATAGGGATTTTCGCGAAATTTCTGCGAAAAACCCATATTTCCCAGTATAAGAAACAATTTCTTACCCCTCTCTCACTGGCAACTCTGTCTTTCGGATGATCTTCTTCTCGTTGACTTTTGGCACATTTTTCAGCTCTCCGGCCGCCAATTTTTTCTGAAGAAAACACATTTTCCAAATGAAAACTCCGTTTTAACTCACCAATGACGACACGGCGAGCCCGCGGACACGTGGCACCTCTTCTGGAGCCTCTGACGTCATCTGAACATCCTCGCCGTCCTTTTTCGCTCTTCTGGCTGCTGCCTTCATCTGTTTGGCTTTTCCGACGGCAATCGCCACCTTGTTACGCACCAAATTCTTCTTTTGGTTGCGGAATTTGCCCATTTTCTGGATTTTTTAGCTGAAAAGGGAAAATTCGAAAAAAAAAGACAAAACATAGCAAAAATCACTATTTTATTATCTAAATTCATCTAAAAATACAGCAATAACAAATGATAATTTCTTCGAAAACCTTGAAAAAATTTTTTTTCTAAAAAATTGATTTTTCTTTTTC</canonical>
            <polymorphic>ACGTCGGGTTCTGAAATGTCGTGGTTCTGAAACGTGTGGTCCTGAAACGTCCCAGAGCCTCGAATTCAGACGTCTTCGGTTGATTTTCCCTTGAAAATTTCCCTGAAAATTGCTGGAAAAAATGGTTTTAAAAATTCAATTTTTTCACAAATAACGACAAAATCAACAAAAAAAAGCGAAAATTTAAAAAAAATCAATAATTATTCGGCCATCTCGACGTCTTCTTCCTCCTCCTCCTCGCCATCGTTTCCAGCCAGCTCCTCTTGCATTTTTCTGAAATTCTCCCGAGCGTCGTGCGTCATCTTTTTGTACATCTTCTTCGCCTTCTTCTTCGTAATGTACTGTGCAGTGGTGCCACGTTTGCCGGTTGGAGCTTCCAGAATCTTCTTTCTGCAAAAAATGGAATTTTTCCAACTTTTTCGAGTTTCTGGGATAAATTAGGCCAAAAAATAGGGATTTTCGCGAAATTTCTGCGAAAAACCCATATTTCCCAGTATAARAAACAATTTCTTACCCCTCTCTCACTGGCAACTCTGTCTTTCGGATGATCTTCTTCTCGTTGACTTTTGGCACATTTTTCAGCTCTCCGGCCGCCAATTTTTTCTGAAGAAAACACATTTTCCAAATGAAAACTCCGTTTTAACTCACCAATGACGACACGGCGAGCCCGCGGACACGTGGCACCTCTTCTGGAGCCTCTGACGTCATCTGAACATCCTCGCCGTCCTTTTTCGCTCTTCTGGCTGCTGCCTTCATCTGTTTGGCTTTTCCGACGGCAATCGCCACCTTGTTACGCACCAAATTCTTCTTTTGGTTGCGGAATTTGCCCATTTTCTGGATTTTTTAGCTGAAAAGGGAAAATTCGAAAAAAAAAGACAAAACATAGCAAAAATCACTATTTTATTATCTAAATTCATCTAAAAATACAGCAATAACAAATGATAATTTCTTCGAAAACCTTGAAAAAATTTTTTTTCTAAAAAATTGATTTTTCTTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGGAATTTTTCCAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTTAAAACGGAGTTTTCATTTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATGGAATTTTTCCAACTTTTTCGAGTTTCTGGGATAAATTAGGCCAAAAAATAGGGATTTTCGCGAAATTTCTGCGAAAAACCCATATTTCCCAGTATAAGAAACAATTTCTTACCCCTCTCTCACTGGCAACTCTGTCTTTCGGATGATCTTCTTCTCGTTGACTTTTGGCACATTTTTCAGCTCTCCGGCCGCCAATTTTTTCTGAAGAAAACACATTTTCCAAATGAAAACTCCGTTTTAAC</canonical_amplicon>
		<polymorphic_amplicon>AAATGGAATTTTTCCAACTTTTTCGAGTTTCTGGGATAAATTAGGCCAAAAAATAGGGATTTTCGCGAAATTTCTGCGAAAAACCCATATTTCCCAGTATAARAAACAATTTCTTACCCCTCTCTCACTGGCAACTCTGTCTTTCGGATGATCTTCTTCTCGTTGACTTTTGGCACATTTTTCAGCTCTCCGGCCGCCAATTTTTTCTGAAGAAAACACATTTTCCAAATGAAAACTCCGTTTTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15285</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>355660</contig_pos>
        <strand>+</strand>
        <context>CGGACACGTG[G/T]CACCTCTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACTCCGTTTTAACTCACCAATGACGACACGGCGAGCCCGCGGACACGTG</left_flank>
        <right_flank>CACCTCTTCTGGAGCCTCTGACGTCATCTGAACATCCTCGCCGTCCTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTAAAAAAAATCAATAATTATTCGGCCATCTCGACGTCTTCTTCCTCCTCCTCCTCGCCATCGTTTCCAGCCAGCTCCTCTTGCATTTTTCTGAAATTCTCCCGAGCGTCGTGCGTCATCTTTTTGTACATCTTCTTCGCCTTCTTCTTCGTAATGTACTGTGCAGTGGTGCCACGTTTGCCGGTTGGAGCTTCCAGAATCTTCTTTCTGCAAAAAATGGAATTTTTCCAACTTTTTCGAGTTTCTGGGATAAATTAGGCCAAAAAATAGGGATTTTCGCGAAATTTCTGCGAAAAACCCATATTTCCCAGTATAAGAAACAATTTCTTACCCCTCTCTCACTGGCAACTCTGTCTTTCGGATGATCTTCTTCTCGTTGACTTTTGGCACATTTTTCAGCTCTCCGGCCGCCAATTTTTTCTGAAGAAAACACATTTTCCAAATGAAAACTCCGTTTTAACTCACCAATGACGACACGGCGAGCCCGCGGACACGTGGCACCTCTTCTGGAGCCTCTGACGTCATCTGAACATCCTCGCCGTCCTTTTTCGCTCTTCTGGCTGCTGCCTTCATCTGTTTGGCTTTTCCGACGGCAATCGCCACCTTGTTACGCACCAAATTCTTCTTTTGGTTGCGGAATTTGCCCATTTTCTGGATTTTTTAGCTGAAAAGGGAAAATTCGAAAAAAAAAGACAAAACATAGCAAAAATCACTATTTTATTATCTAAATTCATCTAAAAATACAGCAATAACAAATGATAATTTCTTCGAAAACCTTGAAAAAATTTTTTTTCTAAAAAATTGATTTTTCTTTTTCAGATTTTTAGTTTATATTATTTTCAGTCTGAAATTAATTACTTGTGAATTTTTTCGCTATTTTTACTAGGAAAAACCGGAAATCTAGCCCGGAAACGACGAAAAATAGGCTGGAAAACCACGAAAATGAATTATTTTCTTCTTCTCCTCGAGGAGTACACGGGGGCGCGGAAGAGCGAGCA</canonical>
            <polymorphic>ATTTAAAAAAAATCAATAATTATTCGGCCATCTCGACGTCTTCTTCCTCCTCCTCCTCGCCATCGTTTCCAGCCAGCTCCTCTTGCATTTTTCTGAAATTCTCCCGAGCGTCGTGCGTCATCTTTTTGTACATCTTCTTCGCCTTCTTCTTCGTAATGTACTGTGCAGTGGTGCCACGTTTGCCGGTTGGAGCTTCCAGAATCTTCTTTCTGCAAAAAATGGAATTTTTCCAACTTTTTCGAGTTTCTGGGATAAATTAGGCCAAAAAATAGGGATTTTCGCGAAATTTCTGCGAAAAACCCATATTTCCCAGTATAAGAAACAATTTCTTACCCCTCTCTCACTGGCAACTCTGTCTTTCGGATGATCTTCTTCTCGTTGACTTTTGGCACATTTTTCAGCTCTCCGGCCGCCAATTTTTTCTGAAGAAAACACATTTTCCAAATGAAAACTCCGTTTTAACTCACCAATGACGACACGGCGAGCCCGCGGACACGTGKCACCTCTTCTGGAGCCTCTGACGTCATCTGAACATCCTCGCCGTCCTTTTTCGCTCTTCTGGCTGCTGCCTTCATCTGTTTGGCTTTTCCGACGGCAATCGCCACCTTGTTACGCACCAAATTCTTCTTTTGGTTGCGGAATTTGCCCATTTTCTGGATTTTTTAGCTGAAAAGGGAAAATTCGAAAAAAAAAGACAAAACATAGCAAAAATCACTATTTTATTATCTAAATTCATCTAAAAATACAGCAATAACAAATGATAATTTCTTCGAAAACCTTGAAAAAATTTTTTTTCTAAAAAATTGATTTTTCTTTTTCAGATTTTTAGTTTATATTATTTTCAGTCTGAAATTAATTACTTGTGAATTTTTTCGCTATTTTTACTAGGAAAAACCGGAAATCTAGCCCGGAAACGACGAAAAATAGGCTGGAAAACCACGAAAATGAATTATTTTCTTCTTCTCCTCGAGGAGTACACGGGGGCGCGGAAGAGCGAGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>501 329 170</canonical_bands>
                <polymorphic_bands>830 170</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>487 329 172 12</canonical_bands>
                <polymorphic_bands>487 341 172</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAAAACTCCGTTTTAACTCA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCGAATTTTCCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATGAAAACTCCGTTTTAACTCACCAATGACGACACGGCGAGCCCGCGGACACGTGGCACCTCTTCTGGAGCCTCTGACGTCATCTGAACATCCTCGCCGTCCTTTTTCGCTCTTCTGGCTGCTGCCTTCATCTGTTTGGCTTTTCCGACGGCAATCGCCACCTTGTTACGCACCAAATTCTTCTTTTGGTTGCGGAATTTGCCCATTTTCTGGATTTTTTAGCTGAAAAGGGAAAATTCGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATGAAAACTCCGTTTTAACTCACCAATGACGACACGGCGAGCCCGCGGACACGTGKCACCTCTTCTGGAGCCTCTGACGTCATCTGAACATCCTCGCCGTCCTTTTTCGCTCTTCTGGCTGCTGCCTTCATCTGTTTGGCTTTTCCGACGGCAATCGCCACCTTGTTACGCACCAAATTCTTCTTTTGGTTGCGGAATTTGCCCATTTTCTGGATTTTTTAGCTGAAAAGGGAAAATTCGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15286</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>356992</contig_pos>
        <strand>+</strand>
        <context>TTTCTTTTTG[A/C]CACTTGTCCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAACAGAAAATTCGAGGTTTCGGGGCTTGAAAATTCAAATTTCTTTTTG</left_flank>
        <right_flank>CACTTGTCCGAGAGGAGTAAAAAATTGAAAATTAGTTTTTTAAGCATTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGAAGTTTGGCTCGTACCATGTGTAGTTTGGCTGAAAAAATTGAAAAATTGGGTTTAGAGCGTATTTGCAGCATTGGAAAGTATAAAAAAAAGAAAGAGCGCACCAAAAAACCTATAAGTACGAAAAATTTAGCTGTGGAGCGTTTTTTCAGCCTAAAAAGCCTAAAAACGGGAAATTCTCAATAGAGCGCATTTGCAACTAACCTGCAGCTGATTATGCATCCGGGGAGCATCTACAGCTTGTTTGACGTCAGCTTTCAGCCATAGAGCGTGAAGTGCAACGCCAGCGACGCCAGAAATAATCGTGGACCCTCCGGCTCCGCCCACCGCCATCAGCTCCTGTCCGTTGGTGTTGAAGATGACCTAGAAAATGAGAATTTTTAGATTTCTAGGTCACCTGAAGCTTTTTAGAGGTTTCTACTAACTTTCCACGTGGTTGAATGCTCGAAAAACAGAAAATTCGAGGTTTCGGGGCTTGAAAATTCAAATTTCTTTTTGACACTTGTCCGAGAGGAGTAAAAAATTGAAAATTAGTTTTTTAAGCATTTTTTAGGGTTTCTAGGGCCTTATAAGGGTTTTAAAACTCGAAATTTTCCAATTGGTACTTTTCGCTTGTCCTCGTGGACTACAAAACTCACCAACGGACTCTGACTGCTCATCGGCCGTTTTCCGGGGCGAATAAAGTTTGCTGGCGAAGGGGGAAAACCAAAAAAGTTTGGATGCCCGGGTGTCGAAAAATCGTCCATTTCGTTGTTCCACAAAATTCCAGTTGATTCCGAAGAGACCAGTGCGCCGAGGCTGGAAATTTTGAAGGGATTACTGTAGAACAAAAAATCTCGAAGTTTCCAATTTTTTATGTTATCAAATAACTAGCTTTTCGACCTAGAAACACAAAAAAACCAACGTCTAGTTTTGTACTCCTCTCGGACAAGTTACAGTGGGAAATTCGAAATTTTTGAATTTTACTGCACCTTTCAATGAACACAAAAGGGCCTAACC</canonical>
            <polymorphic>GGGAAGTTTGGCTCGTACCATGTGTAGTTTGGCTGAAAAAATTGAAAAATTGGGTTTAGAGCGTATTTGCAGCATTGGAAAGTATAAAAAAAAGAAAGAGCGCACCAAAAAACCTATAAGTACGAAAAATTTAGCTGTGGAGCGTTTTTTCAGCCTAAAAAGCCTAAAAACGGGAAATTCTCAATAGAGCGCATTTGCAACTAACCTGCAGCTGATTATGCATCCGGGGAGCATCTACAGCTTGTTTGACGTCAGCTTTCAGCCATAGAGCGTGAAGTGCAACGCCAGCGACGCCAGAAATAATCGTGGACCCTCCGGCTCCGCCCACCGCCATCAGCTCCTGTCCGTTGGTGTTGAAGATGACCTAGAAAATGAGAATTTTTAGATTTCTAGGTCACCTGAAGCTTTTTAGAGGTTTCTACTAACTTTCCACGTGGTTGAATGCTCGAAAAACAGAAAATTCGAGGTTTCGGGGCTTGAAAATTCAAATTTCTTTTTGMCACTTGTCCGAGAGGAGTAAAAAATTGAAAATTAGTTTTTTAAGCATTTTTTAGGGTTTCTAGGGCCTTATAAGGGTTTTAAAACTCGAAATTTTCCAATTGGTACTTTTCGCTTGTCCTCGTGGACTACAAAACTCACCAACGGACTCTGACTGCTCATCGGCCGTTTTCCGGGGCGAATAAAGTTTGCTGGCGAAGGGGGAAAACCAAAAAAGTTTGGATGCCCGGGTGTCGAAAAATCGTCCATTTCGTTGTTCCACAAAATTCCAGTTGATTCCGAAGAGACCAGTGCGCCGAGGCTGGAAATTTTGAAGGGATTACTGTAGAACAAAAAATCTCGAAGTTTCCAATTTTTTATGTTATCAAATAACTAGCTTTTCGACCTAGAAACACAAAAAAACCAACGTCTAGTTTTGTACTCCTCTCGGACAAGTTACAGTGGGAAATTCGAAATTTTTGAATTTTACTGCACCTTTCAATGAACACAAAAGGGCCTAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNNGTC</site>
                <isoschizomers>
                    <enzyme>BoxI</enzyme>
                    <enzyme>BstPAI</enzyme>
                    <enzyme>PshAI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTTTTAGAGGTTTCTACTAACTTT</pcr_primer_p1>
		<pcr_primer_p2>GTTGGTGAGTTTTGTAGTCCAC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GCTTTTTAGAGGTTTCTACTAACTTTCCACGTGGTTGAATGCTCGAAAAACAGAAAATTCGAGGTTTCGGGGCTTGAAAATTCAAATTTCTTTTTGACACTTGTCCGAGAGGAGTAAAAAATTGAAAATTAGTTTTTTAAGCATTTTTTAGGGTTTCTAGGGCCTTATAAGGGTTTTAAAACTCGAAATTTTCCAATTGGTACTTTTCGCTTGTCCTCGTGGACTACAAAACTCACCAAC</canonical_amplicon>
		<polymorphic_amplicon>GCTTTTTAGAGGTTTCTACTAACTTTCCACGTGGTTGAATGCTCGAAAAACAGAAAATTCGAGGTTTCGGGGCTTGAAAATTCAAATTTCTTTTTGMCACTTGTCCGAGAGGAGTAAAAAATTGAAAATTAGTTTTTTAAGCATTTTTTAGGGTTTCTAGGGCCTTATAAGGGTTTTAAAACTCGAAATTTTCCAATTGGTACTTTTCGCTTGTCCTCGTGGACTACAAAACTCACCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15287</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>356966</contig_pos>
        <strand>+</strand>
        <context>GAGGTTTCGG[A/G]GCTTGAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACTTTCCACGTGGTTGAATGCTCGAAAAACAGAAAATTCGAGGTTTCGG</left_flank>
        <right_flank>GCTTGAAAATTCAAATTTCTTTTTGACACTTGTCCGAGAGGAGTAAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATGAGTGACTTTACATAGGCTTTTGGGAAGTTTGGCTCGTACCATGTGTAGTTTGGCTGAAAAAATTGAAAAATTGGGTTTAGAGCGTATTTGCAGCATTGGAAAGTATAAAAAAAAGAAAGAGCGCACCAAAAAACCTATAAGTACGAAAAATTTAGCTGTGGAGCGTTTTTTCAGCCTAAAAAGCCTAAAAACGGGAAATTCTCAATAGAGCGCATTTGCAACTAACCTGCAGCTGATTATGCATCCGGGGAGCATCTACAGCTTGTTTGACGTCAGCTTTCAGCCATAGAGCGTGAAGTGCAACGCCAGCGACGCCAGAAATAATCGTGGACCCTCCGGCTCCGCCCACCGCCATCAGCTCCTGTCCGTTGGTGTTGAAGATGACCTAGAAAATGAGAATTTTTAGATTTCTAGGTCACCTGAAGCTTTTTAGAGGTTTCTACTAACTTTCCACGTGGTTGAATGCTCGAAAAACAGAAAATTCGAGGTTTCGGGGCTTGAAAATTCAAATTTCTTTTTGACACTTGTCCGAGAGGAGTAAAAAATTGAAAATTAGTTTTTTAAGCATTTTTTAGGGTTTCTAGGGCCTTATAAGGGTTTTAAAACTCGAAATTTTCCAATTGGTACTTTTCGCTTGTCCTCGTGGACTACAAAACTCACCAACGGACTCTGACTGCTCATCGGCCGTTTTCCGGGGCGAATAAAGTTTGCTGGCGAAGGGGGAAAACCAAAAAAGTTTGGATGCCCGGGTGTCGAAAAATCGTCCATTTCGTTGTTCCACAAAATTCCAGTTGATTCCGAAGAGACCAGTGCGCCGAGGCTGGAAATTTTGAAGGGATTACTGTAGAACAAAAAATCTCGAAGTTTCCAATTTTTTATGTTATCAAATAACTAGCTTTTCGACCTAGAAACACAAAAAAACCAACGTCTAGTTTTGTACTCCTCTCGGACAAGTTACAGTGGGAAATTCGAAATTTTTGAATTTTACTGCACCT</canonical>
            <polymorphic>CAATGAGTGACTTTACATAGGCTTTTGGGAAGTTTGGCTCGTACCATGTGTAGTTTGGCTGAAAAAATTGAAAAATTGGGTTTAGAGCGTATTTGCAGCATTGGAAAGTATAAAAAAAAGAAAGAGCGCACCAAAAAACCTATAAGTACGAAAAATTTAGCTGTGGAGCGTTTTTTCAGCCTAAAAAGCCTAAAAACGGGAAATTCTCAATAGAGCGCATTTGCAACTAACCTGCAGCTGATTATGCATCCGGGGAGCATCTACAGCTTGTTTGACGTCAGCTTTCAGCCATAGAGCGTGAAGTGCAACGCCAGCGACGCCAGAAATAATCGTGGACCCTCCGGCTCCGCCCACCGCCATCAGCTCCTGTCCGTTGGTGTTGAAGATGACCTAGAAAATGAGAATTTTTAGATTTCTAGGTCACCTGAAGCTTTTTAGAGGTTTCTACTAACTTTCCACGTGGTTGAATGCTCGAAAAACAGAAAATTCGAGGTTTCGGRGCTTGAAAATTCAAATTTCTTTTTGACACTTGTCCGAGAGGAGTAAAAAATTGAAAATTAGTTTTTTAAGCATTTTTTAGGGTTTCTAGGGCCTTATAAGGGTTTTAAAACTCGAAATTTTCCAATTGGTACTTTTCGCTTGTCCTCGTGGACTACAAAACTCACCAACGGACTCTGACTGCTCATCGGCCGTTTTCCGGGGCGAATAAAGTTTGCTGGCGAAGGGGGAAAACCAAAAAAGTTTGGATGCCCGGGTGTCGAAAAATCGTCCATTTCGTTGTTCCACAAAATTCCAGTTGATTCCGAAGAGACCAGTGCGCCGAGGCTGGAAATTTTGAAGGGATTACTGTAGAACAAAAAATCTCGAAGTTTCCAATTTTTTATGTTATCAAATAACTAGCTTTTCGACCTAGAAACACAAAAAAACCAACGTCTAGTTTTGTACTCCTCTCGGACAAGTTACAGTGGGAAATTCGAAATTTTTGAATTTTACTGCACCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>136 102 100 98 90 75 71 67 56 49 29 21 21 19 19 16 15 9 7</canonical_bands>
                <polymorphic_bands>161 136 102 100 98 75 67 56 49 29 21 21 19 19 16 15 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTTTTAGAGGTTTCTACTAACTTT</pcr_primer_p1>
		<pcr_primer_p2>GTTGGTGAGTTTTGTAGTCCAC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GCTTTTTAGAGGTTTCTACTAACTTTCCACGTGGTTGAATGCTCGAAAAACAGAAAATTCGAGGTTTCGGGGCTTGAAAATTCAAATTTCTTTTTGACACTTGTCCGAGAGGAGTAAAAAATTGAAAATTAGTTTTTTAAGCATTTTTTAGGGTTTCTAGGGCCTTATAAGGGTTTTAAAACTCGAAATTTTCCAATTGGTACTTTTCGCTTGTCCTCGTGGACTACAAAACTCACCAAC</canonical_amplicon>
		<polymorphic_amplicon>GCTTTTTAGAGGTTTCTACTAACTTTCCACGTGGTTGAATGCTCGAAAAACAGAAAATTCGAGGTTTCGGRGCTTGAAAATTCAAATTTCTTTTTGACACTTGTCCGAGAGGAGTAAAAAATTGAAAATTAGTTTTTTAAGCATTTTTTAGGGTTTCTAGGGCCTTATAAGGGTTTTAAAACTCGAAATTTTCCAATTGGTACTTTTCGCTTGTCCTCGTGGACTACAAAACTCACCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15288</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>356893</contig_pos>
        <strand>+</strand>
        <context>TAGGTCACCT[A/G]AAGCTTTTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGTTGAAGATGACCTAGAAAATGAGAATTTTTAGATTTCTAGGTCACCT</left_flank>
        <right_flank>AAGCTTTTTAGAGGTTTCTACTAACTTTCCACGTGGTTGAATGCTCGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCCATCGGCGAGTCGTTCGGCAGCAGTGACAACCGTCAGATTATTCACAGCTTTCATCGTATGTCCGCGATCAATGAGTGACTTTACATAGGCTTTTGGGAAGTTTGGCTCGTACCATGTGTAGTTTGGCTGAAAAAATTGAAAAATTGGGTTTAGAGCGTATTTGCAGCATTGGAAAGTATAAAAAAAAGAAAGAGCGCACCAAAAAACCTATAAGTACGAAAAATTTAGCTGTGGAGCGTTTTTTCAGCCTAAAAAGCCTAAAAACGGGAAATTCTCAATAGAGCGCATTTGCAACTAACCTGCAGCTGATTATGCATCCGGGGAGCATCTACAGCTTGTTTGACGTCAGCTTTCAGCCATAGAGCGTGAAGTGCAACGCCAGCGACGCCAGAAATAATCGTGGACCCTCCGGCTCCGCCCACCGCCATCAGCTCCTGTCCGTTGGTGTTGAAGATGACCTAGAAAATGAGAATTTTTAGATTTCTAGGTCACCTGAAGCTTTTTAGAGGTTTCTACTAACTTTCCACGTGGTTGAATGCTCGAAAAACAGAAAATTCGAGGTTTCGGGGCTTGAAAATTCAAATTTCTTTTTGACACTTGTCCGAGAGGAGTAAAAAATTGAAAATTAGTTTTTTAAGCATTTTTTAGGGTTTCTAGGGCCTTATAAGGGTTTTAAAACTCGAAATTTTCCAATTGGTACTTTTCGCTTGTCCTCGTGGACTACAAAACTCACCAACGGACTCTGACTGCTCATCGGCCGTTTTCCGGGGCGAATAAAGTTTGCTGGCGAAGGGGGAAAACCAAAAAAGTTTGGATGCCCGGGTGTCGAAAAATCGTCCATTTCGTTGTTCCACAAAATTCCAGTTGATTCCGAAGAGACCAGTGCGCCGAGGCTGGAAATTTTGAAGGGATTACTGTAGAACAAAAAATCTCGAAGTTTCCAATTTTTTATGTTATCAAATAACTAGCTTTTCGACCTAGAAACACAAAAAAAC</canonical>
            <polymorphic>TGTCCATCGGCGAGTCGTTCGGCAGCAGTGACAACCGTCAGATTATTCACAGCTTTCATCGTATGTCCGCGATCAATGAGTGACTTTACATAGGCTTTTGGGAAGTTTGGCTCGTACCATGTGTAGTTTGGCTGAAAAAATTGAAAAATTGGGTTTAGAGCGTATTTGCAGCATTGGAAAGTATAAAAAAAAGAAAGAGCGCACCAAAAAACCTATAAGTACGAAAAATTTAGCTGTGGAGCGTTTTTTCAGCCTAAAAAGCCTAAAAACGGGAAATTCTCAATAGAGCGCATTTGCAACTAACCTGCAGCTGATTATGCATCCGGGGAGCATCTACAGCTTGTTTGACGTCAGCTTTCAGCCATAGAGCGTGAAGTGCAACGCCAGCGACGCCAGAAATAATCGTGGACCCTCCGGCTCCGCCCACCGCCATCAGCTCCTGTCCGTTGGTGTTGAAGATGACCTAGAAAATGAGAATTTTTAGATTTCTAGGTCACCTRAAGCTTTTTAGAGGTTTCTACTAACTTTCCACGTGGTTGAATGCTCGAAAAACAGAAAATTCGAGGTTTCGGGGCTTGAAAATTCAAATTTCTTTTTGACACTTGTCCGAGAGGAGTAAAAAATTGAAAATTAGTTTTTTAAGCATTTTTTAGGGTTTCTAGGGCCTTATAAGGGTTTTAAAACTCGAAATTTTCCAATTGGTACTTTTCGCTTGTCCTCGTGGACTACAAAACTCACCAACGGACTCTGACTGCTCATCGGCCGTTTTCCGGGGCGAATAAAGTTTGCTGGCGAAGGGGGAAAACCAAAAAAGTTTGGATGCCCGGGTGTCGAAAAATCGTCCATTTCGTTGTTCCACAAAATTCCAGTTGATTCCGAAGAGACCAGTGCGCCGAGGCTGGAAATTTTGAAGGGATTACTGTAGAACAAAAAATCTCGAAGTTTCCAATTTTTTATGTTATCAAATAACTAGCTTTTCGACCTAGAAACACAAAAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCATCTACAGCTTGTTTGA</pcr_primer_p1>
		<pcr_primer_p2>AAACCTCGAATTTTCTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GAGCATCTACAGCTTGTTTGACGTCAGCTTTCAGCCATAGAGCGTGAAGTGCAACGCCAGCGACGCCAGAAATAATCGTGGACCCTCCGGCTCCGCCCACCGCCATCAGCTCCTGTCCGTTGGTGTTGAAGATGACCTAGAAAATGAGAATTTTTAGATTTCTAGGTCACCTGAAGCTTTTTAGAGGTTTCTACTAACTTTCCACGTGGTTGAATGCTCGAAAAACAGAAAATTCGAGGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAGCATCTACAGCTTGTTTGACGTCAGCTTTCAGCCATAGAGCGTGAAGTGCAACGCCAGCGACGCCAGAAATAATCGTGGACCCTCCGGCTCCGCCCACCGCCATCAGCTCCTGTCCGTTGGTGTTGAAGATGACCTAGAAAATGAGAATTTTTAGATTTCTAGGTCACCTRAAGCTTTTTAGAGGTTTCTACTAACTTTCCACGTGGTTGAATGCTCGAAAAACAGAAAATTCGAGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15289</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>356833</contig_pos>
        <strand>+</strand>
        <context>CCATCAGCTC[A/C]TGTCCGTTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACGCCAGAAATAATCGTGGACCCTCCGGCTCCGCCCACCGCCATCAGCTC</left_flank>
        <right_flank>TGTCCGTTGGTGTTGAAGATGACCTAGAAAATGAGAATTTTTAGATTTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCTAATAACCAGCCGGCGCCGATTCTTCGCCTTTTCGAAAATCGGAATTCGCATAAATTTGTCCATCGGCGAGTCGTTCGGCAGCAGTGACAACCGTCAGATTATTCACAGCTTTCATCGTATGTCCGCGATCAATGAGTGACTTTACATAGGCTTTTGGGAAGTTTGGCTCGTACCATGTGTAGTTTGGCTGAAAAAATTGAAAAATTGGGTTTAGAGCGTATTTGCAGCATTGGAAAGTATAAAAAAAAGAAAGAGCGCACCAAAAAACCTATAAGTACGAAAAATTTAGCTGTGGAGCGTTTTTTCAGCCTAAAAAGCCTAAAAACGGGAAATTCTCAATAGAGCGCATTTGCAACTAACCTGCAGCTGATTATGCATCCGGGGAGCATCTACAGCTTGTTTGACGTCAGCTTTCAGCCATAGAGCGTGAAGTGCAACGCCAGCGACGCCAGAAATAATCGTGGACCCTCCGGCTCCGCCCACCGCCATCAGCTCCTGTCCGTTGGTGTTGAAGATGACCTAGAAAATGAGAATTTTTAGATTTCTAGGTCACCTGAAGCTTTTTAGAGGTTTCTACTAACTTTCCACGTGGTTGAATGCTCGAAAAACAGAAAATTCGAGGTTTCGGGGCTTGAAAATTCAAATTTCTTTTTGACACTTGTCCGAGAGGAGTAAAAAATTGAAAATTAGTTTTTTAAGCATTTTTTAGGGTTTCTAGGGCCTTATAAGGGTTTTAAAACTCGAAATTTTCCAATTGGTACTTTTCGCTTGTCCTCGTGGACTACAAAACTCACCAACGGACTCTGACTGCTCATCGGCCGTTTTCCGGGGCGAATAAAGTTTGCTGGCGAAGGGGGAAAACCAAAAAAGTTTGGATGCCCGGGTGTCGAAAAATCGTCCATTTCGTTGTTCCACAAAATTCCAGTTGATTCCGAAGAGACCAGTGCGCCGAGGCTGGAAATTTTGAAGGGATTACTGTAGAACAAAAAATCTCGA</canonical>
            <polymorphic>CGCTAATAACCAGCCGGCGCCGATTCTTCGCCTTTTCGAAAATCGGAATTCGCATAAATTTGTCCATCGGCGAGTCGTTCGGCAGCAGTGACAACCGTCAGATTATTCACAGCTTTCATCGTATGTCCGCGATCAATGAGTGACTTTACATAGGCTTTTGGGAAGTTTGGCTCGTACCATGTGTAGTTTGGCTGAAAAAATTGAAAAATTGGGTTTAGAGCGTATTTGCAGCATTGGAAAGTATAAAAAAAAGAAAGAGCGCACCAAAAAACCTATAAGTACGAAAAATTTAGCTGTGGAGCGTTTTTTCAGCCTAAAAAGCCTAAAAACGGGAAATTCTCAATAGAGCGCATTTGCAACTAACCTGCAGCTGATTATGCATCCGGGGAGCATCTACAGCTTGTTTGACGTCAGCTTTCAGCCATAGAGCGTGAAGTGCAACGCCAGCGACGCCAGAAATAATCGTGGACCCTCCGGCTCCGCCCACCGCCATCAGCTCMTGTCCGTTGGTGTTGAAGATGACCTAGAAAATGAGAATTTTTAGATTTCTAGGTCACCTGAAGCTTTTTAGAGGTTTCTACTAACTTTCCACGTGGTTGAATGCTCGAAAAACAGAAAATTCGAGGTTTCGGGGCTTGAAAATTCAAATTTCTTTTTGACACTTGTCCGAGAGGAGTAAAAAATTGAAAATTAGTTTTTTAAGCATTTTTTAGGGTTTCTAGGGCCTTATAAGGGTTTTAAAACTCGAAATTTTCCAATTGGTACTTTTCGCTTGTCCTCGTGGACTACAAAACTCACCAACGGACTCTGACTGCTCATCGGCCGTTTTCCGGGGCGAATAAAGTTTGCTGGCGAAGGGGGAAAACCAAAAAAGTTTGGATGCCCGGGTGTCGAAAAATCGTCCATTTCGTTGTTCCACAAAATTCCAGTTGATTCCGAAGAGACCAGTGCGCCGAGGCTGGAAATTTTGAAGGGATTACTGTAGAACAAAAAATCTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAGNNNCTG</site>
                <isoschizomers>
                    <enzyme>AlwNI</enzyme>
                    <enzyme>CaiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGCATCTACAGCTTGTTTGA</pcr_primer_p1>
		<pcr_primer_p2>AAACCTCGAATTTTCTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GAGCATCTACAGCTTGTTTGACGTCAGCTTTCAGCCATAGAGCGTGAAGTGCAACGCCAGCGACGCCAGAAATAATCGTGGACCCTCCGGCTCCGCCCACCGCCATCAGCTCCTGTCCGTTGGTGTTGAAGATGACCTAGAAAATGAGAATTTTTAGATTTCTAGGTCACCTGAAGCTTTTTAGAGGTTTCTACTAACTTTCCACGTGGTTGAATGCTCGAAAAACAGAAAATTCGAGGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAGCATCTACAGCTTGTTTGACGTCAGCTTTCAGCCATAGAGCGTGAAGTGCAACGCCAGCGACGCCAGAAATAATCGTGGACCCTCCGGCTCCGCCCACCGCCATCAGCTCMTGTCCGTTGGTGTTGAAGATGACCTAGAAAATGAGAATTTTTAGATTTCTAGGTCACCTGAAGCTTTTTAGAGGTTTCTACTAACTTTCCACGTGGTTGAATGCTCGAAAAACAGAAAATTCGAGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15290</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>356666</contig_pos>
        <strand>+</strand>
        <context>CTAAAAACGG[A/G]AAATTCTCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAAATTTAGCTGTGGAGCGTTTTTTCAGCCTAAAAAGCCTAAAAACGG</left_flank>
        <right_flank>AAATTCTCAATAGAGCGCATTTGCAACTAACCTGCAGCTGATTATGCATC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCCTCTCGATAGCATTTTGGCGCGTATTTGAATGCAATTTTTCGTTTTGGTGTTTTACGAAGTTTAAATGTATGAAATAAAGGTTTTAAAAACTTGTATTCAACGAAAATTTGTATTTGTACCTCATTTATTACAAAAAACAAAGATAAAAAACTACAAAAGAACCCGCTAATAACCAGCCGGCGCCGATTCTTCGCCTTTTCGAAAATCGGAATTCGCATAAATTTGTCCATCGGCGAGTCGTTCGGCAGCAGTGACAACCGTCAGATTATTCACAGCTTTCATCGTATGTCCGCGATCAATGAGTGACTTTACATAGGCTTTTGGGAAGTTTGGCTCGTACCATGTGTAGTTTGGCTGAAAAAATTGAAAAATTGGGTTTAGAGCGTATTTGCAGCATTGGAAAGTATAAAAAAAAGAAAGAGCGCACCAAAAAACCTATAAGTACGAAAAATTTAGCTGTGGAGCGTTTTTTCAGCCTAAAAAGCCTAAAAACGGGAAATTCTCAATAGAGCGCATTTGCAACTAACCTGCAGCTGATTATGCATCCGGGGAGCATCTACAGCTTGTTTGACGTCAGCTTTCAGCCATAGAGCGTGAAGTGCAACGCCAGCGACGCCAGAAATAATCGTGGACCCTCCGGCTCCGCCCACCGCCATCAGCTCCTGTCCGTTGGTGTTGAAGATGACCTAGAAAATGAGAATTTTTAGATTTCTAGGTCACCTGAAGCTTTTTAGAGGTTTCTACTAACTTTCCACGTGGTTGAATGCTCGAAAAACAGAAAATTCGAGGTTTCGGGGCTTGAAAATTCAAATTTCTTTTTGACACTTGTCCGAGAGGAGTAAAAAATTGAAAATTAGTTTTTTAAGCATTTTTTAGGGTTTCTAGGGCCTTATAAGGGTTTTAAAACTCGAAATTTTCCAATTGGTACTTTTCGCTTGTCCTCGTGGACTACAAAACTCACCAACGGACTCTGACTGCTCATCGGCCGTTTTCCGG</canonical>
            <polymorphic>TCCCTCTCGATAGCATTTTGGCGCGTATTTGAATGCAATTTTTCGTTTTGGTGTTTTACGAAGTTTAAATGTATGAAATAAAGGTTTTAAAAACTTGTATTCAACGAAAATTTGTATTTGTACCTCATTTATTACAAAAAACAAAGATAAAAAACTACAAAAGAACCCGCTAATAACCAGCCGGCGCCGATTCTTCGCCTTTTCGAAAATCGGAATTCGCATAAATTTGTCCATCGGCGAGTCGTTCGGCAGCAGTGACAACCGTCAGATTATTCACAGCTTTCATCGTATGTCCGCGATCAATGAGTGACTTTACATAGGCTTTTGGGAAGTTTGGCTCGTACCATGTGTAGTTTGGCTGAAAAAATTGAAAAATTGGGTTTAGAGCGTATTTGCAGCATTGGAAAGTATAAAAAAAAGAAAGAGCGCACCAAAAAACCTATAAGTACGAAAAATTTAGCTGTGGAGCGTTTTTTCAGCCTAAAAAGCCTAAAAACGGRAAATTCTCAATAGAGCGCATTTGCAACTAACCTGCAGCTGATTATGCATCCGGGGAGCATCTACAGCTTGTTTGACGTCAGCTTTCAGCCATAGAGCGTGAAGTGCAACGCCAGCGACGCCAGAAATAATCGTGGACCCTCCGGCTCCGCCCACCGCCATCAGCTCCTGTCCGTTGGTGTTGAAGATGACCTAGAAAATGAGAATTTTTAGATTTCTAGGTCACCTGAAGCTTTTTAGAGGTTTCTACTAACTTTCCACGTGGTTGAATGCTCGAAAAACAGAAAATTCGAGGTTTCGGGGCTTGAAAATTCAAATTTCTTTTTGACACTTGTCCGAGAGGAGTAAAAAATTGAAAATTAGTTTTTTAAGCATTTTTTAGGGTTTCTAGGGCCTTATAAGGGTTTTAAAACTCGAAATTTTCCAATTGGTACTTTTCGCTTGTCCTCGTGGACTACAAAACTCACCAACGGACTCTGACTGCTCATCGGCCGTTTTCCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACGAAAAATTTAGCTGTGGA</pcr_primer_p1>
		<pcr_primer_p2>TCATTTTCTAGGTCATCTTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TACGAAAAATTTAGCTGTGGAGCGTTTTTTCAGCCTAAAAAGCCTAAAAACGGGAAATTCTCAATAGAGCGCATTTGCAACTAACCTGCAGCTGATTATGCATCCGGGGAGCATCTACAGCTTGTTTGACGTCAGCTTTCAGCCATAGAGCGTGAAGTGCAACGCCAGCGACGCCAGAAATAATCGTGGACCCTCCGGCTCCGCCCACCGCCATCAGCTCCTGTCCGTTGGTGTTGAAGATGACCTAGAAAATGA</canonical_amplicon>
		<polymorphic_amplicon>TACGAAAAATTTAGCTGTGGAGCGTTTTTTCAGCCTAAAAAGCCTAAAAACGGRAAATTCTCAATAGAGCGCATTTGCAACTAACCTGCAGCTGATTATGCATCCGGGGAGCATCTACAGCTTGTTTGACGTCAGCTTTCAGCCATAGAGCGTGAAGTGCAACGCCAGCGACGCCAGAAATAATCGTGGACCCTCCGGCTCCGCCCACCGCCATCAGCTCCTGTCCGTTGGTGTTGAAGATGACCTAGAAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15309</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>136916</contig_pos>
        <strand>+</strand>
        <context>GAAAAATTCG[A/G]AAAAAAATTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGATTATCGAAAAATGGAATACTTCGAAATTCCAATTTTCGAAAAATTCG</left_flank>
        <right_flank>AAAAAAATTAGAAATTCCTGTTACTAAAAATTAAGAACATTTTCTGAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGCCTAACATGCCCCTGATATGTTTTCTCGATCATTTTGAAGTGGTGGCCTAGAATACTCAGTTTGAAAAAGTTGAGCCACCGCATGTGTTAGCCCAGTTCTAGGCCATTTTACCATGGTAACCTAGAAAACTTAACTCGAAAAGTTAGGCCCCCACTTCAAAATGACCTAGAAAATACACAAAGTGAATATCAAACCAATTCTATGTCATTCTAATTTGGCGGCCTAGAAAACCCAACTTGCAAAAGTCAGGCCATCACGTTAAAGTGTATTCGTTTCACAAATTCTTCGAAAAATTTTGATGACTTTCTCAAACATTTTTCGAAGTCGTGTCGAAAGGACACACTGTTCGCAACTTCAAAAATCCGGTTTTTGAAAATTCAGAAAATCATAAGTCCCGTTTTCAAAAGTTCGGAACGTTCTAAAATGTTGAGGGTACCAAAAGCTCCGATTATCGAAAAATGGAATACTTCGAAATTCCAATTTTCGAAAAATTCGGAAAAAAATTAGAAATTCCTGTTACTAAAAATTAAGAACATTTTCTGAATTCCGAATTTTTAATTTTCAGAAATTTTGGATTTTTCGAAATTATGATTACTACTCAGATATTTGAAATATTCTGGGTTTTTTTTATTTGTTGCGAAAAAAAATTTCCAATTCATGTACCCCTGTACATGAAAGTTACTGAAAAATTTTAACTTTCGAATGATTTTCTTTTAAGTTTCTGAACGTTCTTCTTCTCGTTTTCATATGATTTGTAAAAACTCACTTTTTTTGAGAGAACATTATTACGAAATATCGGAATTCCAGGAATAATAAAAAAGAACAAAGAGGCAGAGAATATTGAGAAAAATCAAAAAGGGAACTCTCCAAAATCCATTCATTAACAGGATTTTTGGAGAATTCCCGAAAATATTTAGACGTCTATTCAGTCAAGTCGTCAAAAGAGAAAATGAATGATTATGTTTGCAGCAGCCAGAGGGGACGGAAAAATGACTC</canonical>
            <polymorphic>TAGCCTAACATGCCCCTGATATGTTTTCTCGATCATTTTGAAGTGGTGGCCTAGAATACTCAGTTTGAAAAAGTTGAGCCACCGCATGTGTTAGCCCAGTTCTAGGCCATTTTACCATGGTAACCTAGAAAACTTAACTCGAAAAGTTAGGCCCCCACTTCAAAATGACCTAGAAAATACACAAAGTGAATATCAAACCAATTCTATGTCATTCTAATTTGGCGGCCTAGAAAACCCAACTTGCAAAAGTCAGGCCATCACGTTAAAGTGTATTCGTTTCACAAATTCTTCGAAAAATTTTGATGACTTTCTCAAACATTTTTCGAAGTCGTGTCGAAAGGACACACTGTTCGCAACTTCAAAAATCCGGTTTTTGAAAATTCAGAAAATCATAAGTCCCGTTTTCAAAAGTTCGGAACGTTCTAAAATGTTGAGGGTACCAAAAGCTCCGATTATCGAAAAATGGAATACTTCGAAATTCCAATTTTCGAAAAATTCGRAAAAAAATTAGAAATTCCTGTTACTAAAAATTAAGAACATTTTCTGAATTCCGAATTTTTAATTTTCAGAAATTTTGGATTTTTCGAAATTATGATTACTACTCAGATATTTGAAATATTCTGGGTTTTTTTTATTTGTTGCGAAAAAAAATTTCCAATTCATGTACCCCTGTACATGAAAGTTACTGAAAAATTTTAACTTTCGAATGATTTTCTTTTAAGTTTCTGAACGTTCTTCTTCTCGTTTTCATATGATTTGTAAAAACTCACTTTTTTTGAGAGAACATTATTACGAAATATCGGAATTCCAGGAATAATAAAAAAGAACAAAGAGGCAGAGAATATTGAGAAAAATCAAAAAGGGAACTCTCCAAAATCCATTCATTAACAGGATTTTTGGAGAATTCCCGAAAATATTTAGACGTCTATTCAGTCAAGTCGTCAAAAGAGAAAATGAATGATTATGTTTGCAGCAGCCAGAGGGGACGGAAAAATGACTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>384 198 122 75 49 46 37 35 31 16 7</canonical_bands>
                <polymorphic_bands>384 198 122 95 75 37 35 31 16 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTTCGCAACTTCAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CATAATTTCGAAAAATCCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTGTTCGCAACTTCAAAAATCCGGTTTTTGAAAATTCAGAAAATCATAAGTCCCGTTTTCAAAAGTTCGGAACGTTCTAAAATGTTGAGGGTACCAAAAGCTCCGATTATCGAAAAATGGAATACTTCGAAATTCCAATTTTCGAAAAATTCGGAAAAAAATTAGAAATTCCTGTTACTAAAAATTAAGAACATTTTCTGAATTCCGAATTTTTAATTTTCAGAAATTTTGGATTTTTCGAAATTATG</canonical_amplicon>
		<polymorphic_amplicon>CTGTTCGCAACTTCAAAAATCCGGTTTTTGAAAATTCAGAAAATCATAAGTCCCGTTTTCAAAAGTTCGGAACGTTCTAAAATGTTGAGGGTACCAAAAGCTCCGATTATCGAAAAATGGAATACTTCGAAATTCCAATTTTCGAAAAATTCGRAAAAAAATTAGAAATTCCTGTTACTAAAAATTAAGAACATTTTCTGAATTCCGAATTTTTAATTTTCAGAAATTTTGGATTTTTCGAAATTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15312</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>172104</contig_pos>
        <strand>+</strand>
        <context>TCTGGAGCTC[C/T]TTCTTTGGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAGATCAGAAATTTGGTAACAAGCACGGGCTGTCCTAATCTGGAGCTC</left_flank>
        <right_flank>TTCTTTGGAATAAGGCTTCAATTAAGGATCCTAGGAGCCTTAATAATCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGGTTAATCACCGAGTTTCTCCGCCGTTCCTCCAGCAGCTCAATTGATATTTGAGAATTCGCACAACATGTTGCGCGGGAAAAGGAAGAGGATGAGTATGTGTCCACCCTCACTCACAAAAGAGAGCATTTTATTGTTATCGAATTATTCATGACACACACAAGGAAACAACTCAATTGTCTTAGTGACCCCCCAATGCTCTTCTTTTGGAAGTGCTCTGGAGTCGAATTCTTGAGCTTGGAAACTGCTAACCGAAACTGTTTATACTTGTCCTATGTGGCGCAATTGCTCAAACACACAGGGGGCTAGTGGTCCACTTGCCTTCTAGGTAGGAGGAAGGATTAACCCTATTGAGAGAGATCGGATGACAGTTAACACACACTTCTCTCTGTCTCATCGAGTTACACTTACCTACTTGTGGTGCTGGTTTGGTGACAAGGTAAATATTGAAGATCAGAAATTTGGTAACAAGCACGGGCTGTCCTAATCTGGAGCTCCTTCTTTGGAATAAGGCTTCAATTAAGGATCCTAGGAGCCTTAATAATCATAAGATCCTGGAGCCTGGAGCTTGGAGCATAGAGCTTGGAACCTGGAAAATGAATCCTGAAACCTTGAACCTAGAGCTTGGAGCCTAGAACCTAGAACCTGGATTATAGAACCTGATGCCTGAAGCCAGAAGCCTGGAGCCTGGAGCCTGGAGCCTGGAGCCTGGAACCTGGAACCTGGAACCTGGAACCTGGAACCTAGAATCTAGACCGTCAAAGCGGCAGCTGACTGATCTAGGTCAGATTTTGGGACCCAGGTTACGGTAGCCGGATCGCTGAATTTTGAAAAAAATTGACTATTTGGTCTGAGCCGTGAACCTGAAATCGAGCTCTGAAAATTTCCAGACACCTTTCGTCTACAGTAATCCAAACCTATTTGTCTATTGACCTCAAATCGAGCTCCAAAATTGACTCAAAACTCTCTAAAAAATGGCTGGAAATGTTTAAAAAAAT</canonical>
            <polymorphic>AGTGGTTAATCACCGAGTTTCTCCGCCGTTCCTCCAGCAGCTCAATTGATATTTGAGAATTCGCACAACATGTTGCGCGGGAAAAGGAAGAGGATGAGTATGTGTCCACCCTCACTCACAAAAGAGAGCATTTTATTGTTATCGAATTATTCATGACACACACAAGGAAACAACTCAATTGTCTTAGTGACCCCCCAATGCTCTTCTTTTGGAAGTGCTCTGGAGTCGAATTCTTGAGCTTGGAAACTGCTAACCGAAACTGTTTATACTTGTCCTATGTGGCGCAATTGCTCAAACACACAGGGGGCTAGTGGTCCACTTGCCTTCTAGGTAGGAGGAAGGATTAACCCTATTGAGAGAGATCGGATGACAGTTAACACACACTTCTCTCTGTCTCATCGAGTTACACTTACCTACTTGTGGTGCTGGTTTGGTGACAAGGTAAATATTGAAGATCAGAAATTTGGTAACAAGCACGGGCTGTCCTAATCTGGAGCTCYTTCTTTGGAATAAGGCTTCAATTAAGGATCCTAGGAGCCTTAATAATCATAAGATCCTGGAGCCTGGAGCTTGGAGCATAGAGCTTGGAACCTGGAAAATGAATCCTGAAACCTTGAACCTAGAGCTTGGAGCCTAGAACCTAGAACCTGGATTATAGAACCTGATGCCTGAAGCCAGAAGCCTGGAGCCTGGAGCCTGGAGCCTGGAGCCTGGAACCTGGAACCTGGAACCTGGAACCTGGAACCTAGAATCTAGACCGTCAAAGCGGCAGCTGACTGATCTAGGTCAGATTTTGGGACCCAGGTTACGGTAGCCGGATCGCTGAATTTTGAAAAAAATTGACTATTTGGTCTGAGCCGTGAACCTGAAATCGAGCTCTGAAAATTTCCAGACACCTTTCGTCTACAGTAATCCAAACCTATTTGTCTATTGACCTCAAATCGAGCTCCAAAATTGACTCAAAACTCTCTAAAAAATGGCTGGAAATGTTTAAAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACACTTACCTACTTGTGGTGCT</pcr_primer_p1>
		<pcr_primer_p2>TAATCCAGGTTCTAGGTTCTAGG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TACACTTACCTACTTGTGGTGCTGGTTTGGTGACAAGGTAAATATTGAAGATCAGAAATTTGGTAACAAGCACGGGCTGTCCTAATCTGGAGCTCCTTCTTTGGAATAAGGCTTCAATTAAGGATCCTAGGAGCCTTAATAATCATAAGATCCTGGAGCCTGGAGCTTGGAGCATAGAGCTTGGAACCTGGAAAATGAATCCTGAAACCTTGAACCTAGAGCTTGGAGCCTAGAACCTAGAACCTGGATTA</canonical_amplicon>
		<polymorphic_amplicon>TACACTTACCTACTTGTGGTGCTGGTTTGGTGACAAGGTAAATATTGAAGATCAGAAATTTGGTAACAAGCACGGGCTGTCCTAATCTGGAGCTCYTTCTTTGGAATAAGGCTTCAATTAAGGATCCTAGGAGCCTTAATAATCATAAGATCCTGGAGCCTGGAGCTTGGAGCATAGAGCTTGGAACCTGGAAAATGAATCCTGAAACCTTGAACCTAGAGCTTGGAGCCTAGAACCTAGAACCTGGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15313</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>171942</contig_pos>
        <strand>+</strand>
        <context>TAGGTAGGAG[G/T]AAGGATTAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGCTCAAACACACAGGGGGCTAGTGGTCCACTTGCCTTCTAGGTAGGAG</left_flank>
        <right_flank>AAGGATTAACCCTATTGAGAGAGATCGGATGACAGTTAACACACACTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAAAGTGAATTGAGCGGAAGAGAAGAAGAAGATCATTTGGAAGAAACAGAGAACTTTTAATTACCGAGTGTAGCTCCGTCTATCTCGAATTACTAGGAATTACCGTAGTCCCTCCCCACTCCCAGACATTCGCAAATTAATGTTTTTTGTTATTGTTATGAGTGGTTAATCACCGAGTTTCTCCGCCGTTCCTCCAGCAGCTCAATTGATATTTGAGAATTCGCACAACATGTTGCGCGGGAAAAGGAAGAGGATGAGTATGTGTCCACCCTCACTCACAAAAGAGAGCATTTTATTGTTATCGAATTATTCATGACACACACAAGGAAACAACTCAATTGTCTTAGTGACCCCCCAATGCTCTTCTTTTGGAAGTGCTCTGGAGTCGAATTCTTGAGCTTGGAAACTGCTAACCGAAACTGTTTATACTTGTCCTATGTGGCGCAATTGCTCAAACACACAGGGGGCTAGTGGTCCACTTGCCTTCTAGGTAGGAGGAAGGATTAACCCTATTGAGAGAGATCGGATGACAGTTAACACACACTTCTCTCTGTCTCATCGAGTTACACTTACCTACTTGTGGTGCTGGTTTGGTGACAAGGTAAATATTGAAGATCAGAAATTTGGTAACAAGCACGGGCTGTCCTAATCTGGAGCTCCTTCTTTGGAATAAGGCTTCAATTAAGGATCCTAGGAGCCTTAATAATCATAAGATCCTGGAGCCTGGAGCTTGGAGCATAGAGCTTGGAACCTGGAAAATGAATCCTGAAACCTTGAACCTAGAGCTTGGAGCCTAGAACCTAGAACCTGGATTATAGAACCTGATGCCTGAAGCCAGAAGCCTGGAGCCTGGAGCCTGGAGCCTGGAGCCTGGAACCTGGAACCTGGAACCTGGAACCTGGAACCTAGAATCTAGACCGTCAAAGCGGCAGCTGACTGATCTAGGTCAGATTTTGGGACCCAGGTTACGGTAGCCGGATCGCTGAATTTTGAAAAAA</canonical>
            <polymorphic>TTTAAAGTGAATTGAGCGGAAGAGAAGAAGAAGATCATTTGGAAGAAACAGAGAACTTTTAATTACCGAGTGTAGCTCCGTCTATCTCGAATTACTAGGAATTACCGTAGTCCCTCCCCACTCCCAGACATTCGCAAATTAATGTTTTTTGTTATTGTTATGAGTGGTTAATCACCGAGTTTCTCCGCCGTTCCTCCAGCAGCTCAATTGATATTTGAGAATTCGCACAACATGTTGCGCGGGAAAAGGAAGAGGATGAGTATGTGTCCACCCTCACTCACAAAAGAGAGCATTTTATTGTTATCGAATTATTCATGACACACACAAGGAAACAACTCAATTGTCTTAGTGACCCCCCAATGCTCTTCTTTTGGAAGTGCTCTGGAGTCGAATTCTTGAGCTTGGAAACTGCTAACCGAAACTGTTTATACTTGTCCTATGTGGCGCAATTGCTCAAACACACAGGGGGCTAGTGGTCCACTTGCCTTCTAGGTAGGAGKAAGGATTAACCCTATTGAGAGAGATCGGATGACAGTTAACACACACTTCTCTCTGTCTCATCGAGTTACACTTACCTACTTGTGGTGCTGGTTTGGTGACAAGGTAAATATTGAAGATCAGAAATTTGGTAACAAGCACGGGCTGTCCTAATCTGGAGCTCCTTCTTTGGAATAAGGCTTCAATTAAGGATCCTAGGAGCCTTAATAATCATAAGATCCTGGAGCCTGGAGCTTGGAGCATAGAGCTTGGAACCTGGAAAATGAATCCTGAAACCTTGAACCTAGAGCTTGGAGCCTAGAACCTAGAACCTGGATTATAGAACCTGATGCCTGAAGCCAGAAGCCTGGAGCCTGGAGCCTGGAGCCTGGAGCCTGGAACCTGGAACCTGGAACCTGGAACCTGGAACCTAGAATCTAGACCGTCAAAGCGGCAGCTGACTGATCTAGGTCAGATTTTGGGACCCAGGTTACGGTAGCCGGATCGCTGAATTTTGAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTATTCATGACACACACAAG</pcr_primer_p1>
		<pcr_primer_p2>CAGAGAGAAGTGTGTGTTAACTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATTATTCATGACACACACAAGGAAACAACTCAATTGTCTTAGTGACCCCCCAATGCTCTTCTTTTGGAAGTGCTCTGGAGTCGAATTCTTGAGCTTGGAAACTGCTAACCGAAACTGTTTATACTTGTCCTATGTGGCGCAATTGCTCAAACACACAGGGGGCTAGTGGTCCACTTGCCTTCTAGGTAGGAGGAAGGATTAACCCTATTGAGAGAGATCGGATGACAGTTAACACACACTTCTCTCTG</canonical_amplicon>
		<polymorphic_amplicon>GAATTATTCATGACACACACAAGGAAACAACTCAATTGTCTTAGTGACCCCCCAATGCTCTTCTTTTGGAAGTGCTCTGGAGTCGAATTCTTGAGCTTGGAAACTGCTAACCGAAACTGTTTATACTTGTCCTATGTGGCGCAATTGCTCAAACACACAGGGGGCTAGTGGTCCACTTGCCTTCTAGGTAGGAGKAAGGATTAACCCTATTGAGAGAGATCGGATGACAGTTAACACACACTTCTCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15314</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>171929</contig_pos>
        <strand>+</strand>
        <context>TCCACTTGCC[A/T]TCTAGGTAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTATGTGGCGCAATTGCTCAAACACACAGGGGGCTAGTGGTCCACTTGCC</left_flank>
        <right_flank>TCTAGGTAGGAGGAAGGATTAACCCTATTGAGAGAGATCGGATGACAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCCTTTGTTGTTTTAAAGTGAATTGAGCGGAAGAGAAGAAGAAGATCATTTGGAAGAAACAGAGAACTTTTAATTACCGAGTGTAGCTCCGTCTATCTCGAATTACTAGGAATTACCGTAGTCCCTCCCCACTCCCAGACATTCGCAAATTAATGTTTTTTGTTATTGTTATGAGTGGTTAATCACCGAGTTTCTCCGCCGTTCCTCCAGCAGCTCAATTGATATTTGAGAATTCGCACAACATGTTGCGCGGGAAAAGGAAGAGGATGAGTATGTGTCCACCCTCACTCACAAAAGAGAGCATTTTATTGTTATCGAATTATTCATGACACACACAAGGAAACAACTCAATTGTCTTAGTGACCCCCCAATGCTCTTCTTTTGGAAGTGCTCTGGAGTCGAATTCTTGAGCTTGGAAACTGCTAACCGAAACTGTTTATACTTGTCCTATGTGGCGCAATTGCTCAAACACACAGGGGGCTAGTGGTCCACTTGCCTTCTAGGTAGGAGGAAGGATTAACCCTATTGAGAGAGATCGGATGACAGTTAACACACACTTCTCTCTGTCTCATCGAGTTACACTTACCTACTTGTGGTGCTGGTTTGGTGACAAGGTAAATATTGAAGATCAGAAATTTGGTAACAAGCACGGGCTGTCCTAATCTGGAGCTCCTTCTTTGGAATAAGGCTTCAATTAAGGATCCTAGGAGCCTTAATAATCATAAGATCCTGGAGCCTGGAGCTTGGAGCATAGAGCTTGGAACCTGGAAAATGAATCCTGAAACCTTGAACCTAGAGCTTGGAGCCTAGAACCTAGAACCTGGATTATAGAACCTGATGCCTGAAGCCAGAAGCCTGGAGCCTGGAGCCTGGAGCCTGGAGCCTGGAACCTGGAACCTGGAACCTGGAACCTGGAACCTAGAATCTAGACCGTCAAAGCGGCAGCTGACTGATCTAGGTCAGATTTTGGGACCCAGGTTACGGTAGCCGGATCGCTG</canonical>
            <polymorphic>GTCCCTTTGTTGTTTTAAAGTGAATTGAGCGGAAGAGAAGAAGAAGATCATTTGGAAGAAACAGAGAACTTTTAATTACCGAGTGTAGCTCCGTCTATCTCGAATTACTAGGAATTACCGTAGTCCCTCCCCACTCCCAGACATTCGCAAATTAATGTTTTTTGTTATTGTTATGAGTGGTTAATCACCGAGTTTCTCCGCCGTTCCTCCAGCAGCTCAATTGATATTTGAGAATTCGCACAACATGTTGCGCGGGAAAAGGAAGAGGATGAGTATGTGTCCACCCTCACTCACAAAAGAGAGCATTTTATTGTTATCGAATTATTCATGACACACACAAGGAAACAACTCAATTGTCTTAGTGACCCCCCAATGCTCTTCTTTTGGAAGTGCTCTGGAGTCGAATTCTTGAGCTTGGAAACTGCTAACCGAAACTGTTTATACTTGTCCTATGTGGCGCAATTGCTCAAACACACAGGGGGCTAGTGGTCCACTTGCCWTCTAGGTAGGAGGAAGGATTAACCCTATTGAGAGAGATCGGATGACAGTTAACACACACTTCTCTCTGTCTCATCGAGTTACACTTACCTACTTGTGGTGCTGGTTTGGTGACAAGGTAAATATTGAAGATCAGAAATTTGGTAACAAGCACGGGCTGTCCTAATCTGGAGCTCCTTCTTTGGAATAAGGCTTCAATTAAGGATCCTAGGAGCCTTAATAATCATAAGATCCTGGAGCCTGGAGCTTGGAGCATAGAGCTTGGAACCTGGAAAATGAATCCTGAAACCTTGAACCTAGAGCTTGGAGCCTAGAACCTAGAACCTGGATTATAGAACCTGATGCCTGAAGCCAGAAGCCTGGAGCCTGGAGCCTGGAGCCTGGAGCCTGGAACCTGGAACCTGGAACCTGGAACCTGGAACCTAGAATCTAGACCGTCAAAGCGGCAGCTGACTGATCTAGGTCAGATTTTGGGACCCAGGTTACGGTAGCCGGATCGCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTATTCATGACACACACAAG</pcr_primer_p1>
		<pcr_primer_p2>CAGAGAGAAGTGTGTGTTAACTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATTATTCATGACACACACAAGGAAACAACTCAATTGTCTTAGTGACCCCCCAATGCTCTTCTTTTGGAAGTGCTCTGGAGTCGAATTCTTGAGCTTGGAAACTGCTAACCGAAACTGTTTATACTTGTCCTATGTGGCGCAATTGCTCAAACACACAGGGGGCTAGTGGTCCACTTGCCTTCTAGGTAGGAGGAAGGATTAACCCTATTGAGAGAGATCGGATGACAGTTAACACACACTTCTCTCTG</canonical_amplicon>
		<polymorphic_amplicon>GAATTATTCATGACACACACAAGGAAACAACTCAATTGTCTTAGTGACCCCCCAATGCTCTTCTTTTGGAAGTGCTCTGGAGTCGAATTCTTGAGCTTGGAAACTGCTAACCGAAACTGTTTATACTTGTCCTATGTGGCGCAATTGCTCAAACACACAGGGGGCTAGTGGTCCACTTGCCWTCTAGGTAGGAGGAAGGATTAACCCTATTGAGAGAGATCGGATGACAGTTAACACACACTTCTCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15315</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>209043</contig_pos>
        <strand>+</strand>
        <context>ATCATTTTCA[C/T]TATTCAATTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAAATTTCGAATTCTGAAAAAAATTCTCACTTCATTCACATCATTTTCA</left_flank>
        <right_flank>TATTCAATTGCTCTGCACTCTTACTTCTAACTAGCGCATCCGGTGACTTT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGATCAGGTTACTGTAATTTCTATTCTCTATAATGAAGATCCCCACATTCTACACTCGGATGGGCAAGATTCCCAAATGATGGGCAAGATTTGCTCTACAGATGGGAATACAGACTTCCAGAAAACTTGTCAGCCTGTCCAAATGCTAAAGTTTTGCCCAATTTGTGCCAATATCACGGACAGATTGCTCATGGGGGAATACCCAAGAATGCCTCTTACCTCTAGTGATCAACGACACAATTCCATTGAAATTCTTCCACTCGAGTTGCCCAACCATTTTATCATACTTGGCCAAACATTGCACTTTTTGCGACGTTGGAACATCCAAGATCTTGTTAAGAAGATTCAGCGAAAGCAGAAACTCGTTCTCGATTCCACTCTCAAGCATACTCACTGCGATCGCCAGAATTTGCATTCGAGACATTGTTTCCTGAAAATTATAATTTTCTAAATTTCGAATTCTGAAAAAAATTCTCACTTCATTCACATCATTTTCACTATTCAATTGCTCTGCACTCTTACTTCTAACTAGCGCATCCGGTGACTTTGCACTCCAAGACTCACCATCGGCAACCAGCAGCGATAGACGTGCATCTGAAAATGTAATAATTCTGAATTCTGGATCTCTCAAATCTGATTCCTCACTCTTCTTATCCGACTGCTGTACTCTTGAACAGATCACCGATTGACGAACGAATGCAGGTGTGTAGGATGTGGAACGCATATGGGTCGGAGAAATCGACTGTCGCATTTCGATGGTTTCGATTATCTGGAGCTTCGACTTGTTTGAATCTTTAAAATTTCTTCACTTACCGGTGATATATACGGTGAGCAATCCGTCAGACACAACATCAAATCAGTCACATAGGATTGCGTTTCTTCGTGTTGTTCTCCAGCAGTTTCAGCCAATCTCGACATCAATGACGGAATCCATGGTCCTGGCGGTTGTCCGAGTGCTGAAACAATCTGGAAACATCTTCCAGCCACGTGTCGATTCG</canonical>
            <polymorphic>GAAGATCAGGTTACTGTAATTTCTATTCTCTATAATGAAGATCCCCACATTCTACACTCGGATGGGCAAGATTCCCAAATGATGGGCAAGATTTGCTCTACAGATGGGAATACAGACTTCCAGAAAACTTGTCAGCCTGTCCAAATGCTAAAGTTTTGCCCAATTTGTGCCAATATCACGGACAGATTGCTCATGGGGGAATACCCAAGAATGCCTCTTACCTCTAGTGATCAACGACACAATTCCATTGAAATTCTTCCACTCGAGTTGCCCAACCATTTTATCATACTTGGCCAAACATTGCACTTTTTGCGACGTTGGAACATCCAAGATCTTGTTAAGAAGATTCAGCGAAAGCAGAAACTCGTTCTCGATTCCACTCTCAAGCATACTCACTGCGATCGCCAGAATTTGCATTCGAGACATTGTTTCCTGAAAATTATAATTTTCTAAATTTCGAATTCTGAAAAAAATTCTCACTTCATTCACATCATTTTCAYTATTCAATTGCTCTGCACTCTTACTTCTAACTAGCGCATCCGGTGACTTTGCACTCCAAGACTCACCATCGGCAACCAGCAGCGATAGACGTGCATCTGAAAATGTAATAATTCTGAATTCTGGATCTCTCAAATCTGATTCCTCACTCTTCTTATCCGACTGCTGTACTCTTGAACAGATCACCGATTGACGAACGAATGCAGGTGTGTAGGATGTGGAACGCATATGGGTCGGAGAAATCGACTGTCGCATTTCGATGGTTTCGATTATCTGGAGCTTCGACTTGTTTGAATCTTTAAAATTTCTTCACTTACCGGTGATATATACGGTGAGCAATCCGTCAGACACAACATCAAATCAGTCACATAGGATTGCGTTTCTTCGTGTTGTTCTCCAGCAGTTTCAGCCAATCTCGACATCAATGACGGAATCCATGGTCCTGGCGGTTGTCCGAGTGCTGAAACAATCTGGAAACATCTTCCAGCCACGTGTCGATTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>113 92 84 74 71 53 51 47 44 37 30 28 28 24 22 22 18 17 16 16 12 12 11 10 10 9 9 9 9 8 8 4 2</canonical_bands>
                <polymorphic_bands>113 92 84 74 71 53 51 47 44 37 30 29 28 28 24 22 22 17 16 16 12 12 10 10 9 9 9 9 8 8 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGACATTGTTTCCTGAAAATTA</pcr_primer_p1>
		<pcr_primer_p2>AGTACAGCAGTCGGATAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAGACATTGTTTCCTGAAAATTATAATTTTCTAAATTTCGAATTCTGAAAAAAATTCTCACTTCATTCACATCATTTTCACTATTCAATTGCTCTGCACTCTTACTTCTAACTAGCGCATCCGGTGACTTTGCACTCCAAGACTCACCATCGGCAACCAGCAGCGATAGACGTGCATCTGAAAATGTAATAATTCTGAATTCTGGATCTCTCAAATCTGATTCCTCACTCTTCTTATCCGACTGCTGTACT</canonical_amplicon>
		<polymorphic_amplicon>GAGACATTGTTTCCTGAAAATTATAATTTTCTAAATTTCGAATTCTGAAAAAAATTCTCACTTCATTCACATCATTTTCAYTATTCAATTGCTCTGCACTCTTACTTCTAACTAGCGCATCCGGTGACTTTGCACTCCAAGACTCACCATCGGCAACCAGCAGCGATAGACGTGCATCTGAAAATGTAATAATTCTGAATTCTGGATCTCTCAAATCTGATTCCTCACTCTTCTTATCCGACTGCTGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15316</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>226023</contig_pos>
        <strand></strand>
        <context>ATTTTTCATT[C/T]AATTKTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAACGACTCCGAGCATCTTTTTTTCAGTTCTAAATTTTTATTTTTCATT</left_flank>
        <right_flank>AATTGTTTTTCAAAATTTTCAGATATTTTCAGCCGATAAAGAACGCAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCAATTGCGTACTTTCTCCTCTTTCGTCTCCCGCTCTCGTGTCTCCCGCTTTTGGGTGTCTCCCGGATTTGTACGGTCTCTCATTTTCGAAGGAAAAACCCAAAATTTAGTTTTTCCGGCATGTTCCTTTAAAGATTACGGTAGATTTCTAAAGGAACATGTTGCAAAGAGGATGGGTCTCGACGCGACACCGCCGGTTATGCATTTTTTTTCATTTTTTCAGATAATTTTCTCAGTTTTTTTGACAATTTTCACCGTTTTTTCGCCGATTTTCAACGTTCAAATTTATTATAACTCGAAAAAATGAATTTAAATTAAGAAATTCATCGAAAAAACGGTAAAAACTGTTTTTTCATAATTTTATCTCGATTTTTCAGATTTACATCGAAAAAACTGTGAAAATCGTCAAAAAATTAGAAAACTCACCTCTTTTCCGTATATGAAAAATCCAACGACTCCGAGCATCTTTTTTTCAGTTCTAAATTTTTATTTTTCATTCAATTGTTTTTCAAAATTTTCAGATATTTTCAGCCGATAAAGAACGCAATTTATTTTATGACCGATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCAGATTGAAAAACAAAAAAGGAAGCACACACACTGATTAAAGAGAACCATAATAATAATTTAAACAGGCAACAAAGAAAAAAGGATTATATTGAGCTAGAAAATTATTCAGCACTCGCTTCGAACTTTGGATACTTTGCCTGCGCATCACTCCATTGTTGCCGGCCACTGACCAGATCCGAAATCAGTCTTCCGAGCTCCGAGACCTCCAGCCGAATCTGCGACATTGTCTCCGCGTGGCGAATCGTCACAGTGTATGGAGTGGTCTTTCCGGATTCAAAGTCGACGGTGATACCGAATGGAATACCGATTTCGTCGGTACGAGCGTAGCGGCGACCGATGGTTCCAGAGCTGTCGTCCTGGAATGATATATTGATTTAAAAAGTGGAATATATGATCC</canonical>
            <polymorphic>AGCAATTGCGTACTTTCTCCTCTTTCGTCTCCCGCTCTCGTGTCTCCCGCTTTTGGGTGTCTCCCGGATTTGTACGGTCTCTCATTTTCGAAGGAAAAACCCAAAATTTAGTTTTTCCGGCATGTTCCTTTAAAGATTACGGTAGATTTCTAAAGGAACATGTTGCAAAGAGGATGGGTCTCGACGCGACACCGCCGGTTATGCATTTTTTTTCATTTTTTCAGATAATTTTCTCAGTTTTTTTGACAATTTTCACCGTTTTTTCGCCGATTTTCAACGTTCAAATTTATTATAACTCGAAAAAATGAATTTAAATTAAGAAATTCATCGAAAAAACGGTAAAAACTGTTTTTTCATAATTTTATCTCGATTTTTCAGATTTACATCGAAAAAACTGTGAAAATCGTCAAAAAATTAGAAAACTCACCTCTTTTCCGTATATGAAAAATCCAACGACTCCGAGCATCTTTTTTTCAGTTCTAAATTTTTATTTTTCATTYAATTGTTTTTCAAAATTTTCAGATATTTTCAGCCGATAAAGAACGCAATTTATTTTATGACCGATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCAGATTGAAAAACAAAAAAGGAAGCACACACACTGATTAAAGAGAACCATAATAATAATTTAAACAGGCAACAAAGAAAAAAGGATTATATTGAGCTAGAAAATTATTCAGCACTCGCTTCGAACTTTGGATACTTTGCCTGCGCATCACTCCATTGTTGCCGGCCACTGACCAGATCCGAAATCAGTCTTCCGAGCTCCGAGACCTCCAGCCGAATCTGCGACATTGTCTCCGCGTGGCGAATCGTCACAGTGTATGGAGTGGTCTTTCCGGATTCAAAGTCGACGGTGATACCGAATGGAATACCGATTTCGTCGGTACGAGCGTAGCGGCGACCGATGGTTCCAGAGCTGTCGTCCTGGAATGATATATTGATTTAAAAAGTGGAATATATGATCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>500 497 3</canonical_bands>
                <polymorphic_bands>997 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATATGAAAAATCCAACGACTC</pcr_primer_p1>
		<pcr_primer_p2>TCTTTGTTGCCTGTTTAAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTATATGAAAAATCCAACGACTCCGAGCATCTTTTTTTCAGTTCTAAATTTTTATTTTTCATTCAATTGTTTTTCAAAATTTTCAGATATTTTCAGCCGATAAAGAACGCAATTTATTTTATGACCGATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCAGATTGAAAAACAAAAAAGGAAGCACACACACTGATTAAAGAGAACCATAATAATAATTTAAACAGGCAACAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GTATATGAAAAATCCAACGACTCCGAGCATCTTTTTTTCAGTTCTAAATTTTTATTTTTCATTYAATTGTTTTTCAAAATTTTCAGATATTTTCAGCCGATAAAGAACGCAATTTATTTTATGACCGATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCAGATTGAAAAACAAAAAAGGAAGCACACACACTGATTAAAGAGAACCATAATAATAATTTAAACAGGCAACAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15317</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>226028</contig_pos>
        <strand></strand>
        <context>TCATTYAATT[G/T]TTTTTCAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GACTCCGAGCATCTTTTTTTCAGTTCTAAATTTTTATTTTTCATTCAATT</left_flank>
        <right_flank>TTTTTCAAAATTTTCAGATATTTTCAGCCGATAAAGAACGCAATTTATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCGTACTTTCTCCTCTTTCGTCTCCCGCTCTCGTGTCTCCCGCTTTTGGGTGTCTCCCGGATTTGTACGGTCTCTCATTTTCGAAGGAAAAACCCAAAATTTAGTTTTTCCGGCATGTTCCTTTAAAGATTACGGTAGATTTCTAAAGGAACATGTTGCAAAGAGGATGGGTCTCGACGCGACACCGCCGGTTATGCATTTTTTTTCATTTTTTCAGATAATTTTCTCAGTTTTTTTGACAATTTTCACCGTTTTTTCGCCGATTTTCAACGTTCAAATTTATTATAACTCGAAAAAATGAATTTAAATTAAGAAATTCATCGAAAAAACGGTAAAAACTGTTTTTTCATAATTTTATCTCGATTTTTCAGATTTACATCGAAAAAACTGTGAAAATCGTCAAAAAATTAGAAAACTCACCTCTTTTCCGTATATGAAAAATCCAACGACTCCGAGCATCTTTTTTTCAGTTCTAAATTTTTATTTTTCATTCAATTGTTTTTCAAAATTTTCAGATATTTTCAGCCGATAAAGAACGCAATTTATTTTATGACCGATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCAGATTGAAAAACAAAAAAGGAAGCACACACACTGATTAAAGAGAACCATAATAATAATTTAAACAGGCAACAAAGAAAAAAGGATTATATTGAGCTAGAAAATTATTCAGCACTCGCTTCGAACTTTGGATACTTTGCCTGCGCATCACTCCATTGTTGCCGGCCACTGACCAGATCCGAAATCAGTCTTCCGAGCTCCGAGACCTCCAGCCGAATCTGCGACATTGTCTCCGCGTGGCGAATCGTCACAGTGTATGGAGTGGTCTTTCCGGATTCAAAGTCGACGGTGATACCGAATGGAATACCGATTTCGTCGGTACGAGCGTAGCGGCGACCGATGGTTCCAGAGCTGTCGTCCTGGAATGATATATTGATTTAAAAAGTGGAATATATGATCCTGGCT</canonical>
            <polymorphic>TTGCGTACTTTCTCCTCTTTCGTCTCCCGCTCTCGTGTCTCCCGCTTTTGGGTGTCTCCCGGATTTGTACGGTCTCTCATTTTCGAAGGAAAAACCCAAAATTTAGTTTTTCCGGCATGTTCCTTTAAAGATTACGGTAGATTTCTAAAGGAACATGTTGCAAAGAGGATGGGTCTCGACGCGACACCGCCGGTTATGCATTTTTTTTCATTTTTTCAGATAATTTTCTCAGTTTTTTTGACAATTTTCACCGTTTTTTCGCCGATTTTCAACGTTCAAATTTATTATAACTCGAAAAAATGAATTTAAATTAAGAAATTCATCGAAAAAACGGTAAAAACTGTTTTTTCATAATTTTATCTCGATTTTTCAGATTTACATCGAAAAAACTGTGAAAATCGTCAAAAAATTAGAAAACTCACCTCTTTTCCGTATATGAAAAATCCAACGACTCCGAGCATCTTTTTTTCAGTTCTAAATTTTTATTTTTCATTCAATTKTTTTTCAAAATTTTCAGATATTTTCAGCCGATAAAGAACGCAATTTATTTTATGACCGATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCAGATTGAAAAACAAAAAAGGAAGCACACACACTGATTAAAGAGAACCATAATAATAATTTAAACAGGCAACAAAGAAAAAAGGATTATATTGAGCTAGAAAATTATTCAGCACTCGCTTCGAACTTTGGATACTTTGCCTGCGCATCACTCCATTGTTGCCGGCCACTGACCAGATCCGAAATCAGTCTTCCGAGCTCCGAGACCTCCAGCCGAATCTGCGACATTGTCTCCGCGTGGCGAATCGTCACAGTGTATGGAGTGGTCTTTCCGGATTCAAAGTCGACGGTGATACCGAATGGAATACCGATTTCGTCGGTACGAGCGTAGCGGCGACCGATGGTTCCAGAGCTGTCGTCCTGGAATGATATATTGATTTAAAAAGTGGAATATATGATCCTGGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATATGAAAAATCCAACGACTC</pcr_primer_p1>
		<pcr_primer_p2>TCTTTGTTGCCTGTTTAAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTATATGAAAAATCCAACGACTCCGAGCATCTTTTTTTCAGTTCTAAATTTTTATTTTTCATTCAATTGTTTTTCAAAATTTTCAGATATTTTCAGCCGATAAAGAACGCAATTTATTTTATGACCGATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCAGATTGAAAAACAAAAAAGGAAGCACACACACTGATTAAAGAGAACCATAATAATAATTTAAACAGGCAACAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GTATATGAAAAATCCAACGACTCCGAGCATCTTTTTTTCAGTTCTAAATTTTTATTTTTCATTCAATTKTTTTTCAAAATTTTCAGATATTTTCAGCCGATAAAGAACGCAATTTATTTTATGACCGATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCAGATTGAAAAACAAAAAAGGAAGCACACACACTGATTAAAGAGAACCATAATAATAATTTAAACAGGCAACAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15318</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>226086</contig_pos>
        <strand>+</strand>
        <context>TTTTATGACC[A/G]ATAAGCAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTTTCAGATATTTTCAGCCGATAAAGAACGCAATTTATTTTATGACC</left_flank>
        <right_flank>ATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCAGATTGAAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGGATTTGTACGGTCTCTCATTTTCGAAGGAAAAACCCAAAATTTAGTTTTTCCGGCATGTTCCTTTAAAGATTACGGTAGATTTCTAAAGGAACATGTTGCAAAGAGGATGGGTCTCGACGCGACACCGCCGGTTATGCATTTTTTTTCATTTTTTCAGATAATTTTCTCAGTTTTTTTGACAATTTTCACCGTTTTTTCGCCGATTTTCAACGTTCAAATTTATTATAACTCGAAAAAATGAATTTAAATTAAGAAATTCATCGAAAAAACGGTAAAAACTGTTTTTTCATAATTTTATCTCGATTTTTCAGATTTACATCGAAAAAACTGTGAAAATCGTCAAAAAATTAGAAAACTCACCTCTTTTCCGTATATGAAAAATCCAACGACTCCGAGCATCTTTTTTTCAGTTCTAAATTTTTATTTTTCATTCAATTGTTTTTCAAAATTTTCAGATATTTTCAGCCGATAAAGAACGCAATTTATTTTATGACCGATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCAGATTGAAAAACAAAAAAGGAAGCACACACACTGATTAAAGAGAACCATAATAATAATTTAAACAGGCAACAAAGAAAAAAGGATTATATTGAGCTAGAAAATTATTCAGCACTCGCTTCGAACTTTGGATACTTTGCCTGCGCATCACTCCATTGTTGCCGGCCACTGACCAGATCCGAAATCAGTCTTCCGAGCTCCGAGACCTCCAGCCGAATCTGCGACATTGTCTCCGCGTGGCGAATCGTCACAGTGTATGGAGTGGTCTTTCCGGATTCAAAGTCGACGGTGATACCGAATGGAATACCGATTTCGTCGGTACGAGCGTAGCGGCGACCGATGGTTCCAGAGCTGTCGTCCTGGAATGATATATTGATTTAAAAAGTGGAATATATGATCCTGGCTGGCATTTATAACTCTGACAGCCTCTGACCCCTACTTACCACTTTGTAGCTAAGCTCAT</canonical>
            <polymorphic>CCGGATTTGTACGGTCTCTCATTTTCGAAGGAAAAACCCAAAATTTAGTTTTTCCGGCATGTTCCTTTAAAGATTACGGTAGATTTCTAAAGGAACATGTTGCAAAGAGGATGGGTCTCGACGCGACACCGCCGGTTATGCATTTTTTTTCATTTTTTCAGATAATTTTCTCAGTTTTTTTGACAATTTTCACCGTTTTTTCGCCGATTTTCAACGTTCAAATTTATTATAACTCGAAAAAATGAATTTAAATTAAGAAATTCATCGAAAAAACGGTAAAAACTGTTTTTTCATAATTTTATCTCGATTTTTCAGATTTACATCGAAAAAACTGTGAAAATCGTCAAAAAATTAGAAAACTCACCTCTTTTCCGTATATGAAAAATCCAACGACTCCGAGCATCTTTTTTTCAGTTCTAAATTTTTATTTTTCATTCAATTGTTTTTCAAAATTTTCAGATATTTTCAGCCGATAAAGAACGCAATTTATTTTATGACCRATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCAGATTGAAAAACAAAAAAGGAAGCACACACACTGATTAAAGAGAACCATAATAATAATTTAAACAGGCAACAAAGAAAAAAGGATTATATTGAGCTAGAAAATTATTCAGCACTCGCTTCGAACTTTGGATACTTTGCCTGCGCATCACTCCATTGTTGCCGGCCACTGACCAGATCCGAAATCAGTCTTCCGAGCTCCGAGACCTCCAGCCGAATCTGCGACATTGTCTCCGCGTGGCGAATCGTCACAGTGTATGGAGTGGTCTTTCCGGATTCAAAGTCGACGGTGATACCGAATGGAATACCGATTTCGTCGGTACGAGCGTAGCGGCGACCGATGGTTCCAGAGCTGTCGTCCTGGAATGATATATTGATTTAAAAAGTGGAATATATGATCCTGGCTGGCATTTATAACTCTGACAGCCTCTGACCCCTACTTACCACTTTGTAGCTAAGCTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATATGAAAAATCCAACGACTC</pcr_primer_p1>
		<pcr_primer_p2>TCTTTGTTGCCTGTTTAAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTATATGAAAAATCCAACGACTCCGAGCATCTTTTTTTCAGTTCTAAATTTTTATTTTTCATTCAATTGTTTTTCAAAATTTTCAGATATTTTCAGCCGATAAAGAACGCAATTTATTTTATGACCGATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCAGATTGAAAAACAAAAAAGGAAGCACACACACTGATTAAAGAGAACCATAATAATAATTTAAACAGGCAACAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GTATATGAAAAATCCAACGACTCCGAGCATCTTTTTTTCAGTTCTAAATTTTTATTTTTCATTCAATTGTTTTTCAAAATTTTCAGATATTTTCAGCCGATAAAGAACGCAATTTATTTTATGACCRATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCAGATTGAAAAACAAAAAAGGAAGCACACACACTGATTAAAGAGAACCATAATAATAATTTAAACAGGCAACAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15319</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>226127</contig_pos>
        <strand>+</strand>
        <context>AACGAAACCA[A/G]ATTRAAAAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTATGACCGATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCA</left_flank>
        <right_flank>ATTGAAAAACAAAAAAGGAAGCACACACACTGATTAAAGAGAACCATAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTAGTTTTTCCGGCATGTTCCTTTAAAGATTACGGTAGATTTCTAAAGGAACATGTTGCAAAGAGGATGGGTCTCGACGCGACACCGCCGGTTATGCATTTTTTTTCATTTTTTCAGATAATTTTCTCAGTTTTTTTGACAATTTTCACCGTTTTTTCGCCGATTTTCAACGTTCAAATTTATTATAACTCGAAAAAATGAATTTAAATTAAGAAATTCATCGAAAAAACGGTAAAAACTGTTTTTTCATAATTTTATCTCGATTTTTCAGATTTACATCGAAAAAACTGTGAAAATCGTCAAAAAATTAGAAAACTCACCTCTTTTCCGTATATGAAAAATCCAACGACTCCGAGCATCTTTTTTTCAGTTCTAAATTTTTATTTTTCATTCAATTGTTTTTCAAAATTTTCAGATATTTTCAGCCGATAAAGAACGCAATTTATTTTATGACCGATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCAGATTGAAAAACAAAAAAGGAAGCACACACACTGATTAAAGAGAACCATAATAATAATTTAAACAGGCAACAAAGAAAAAAGGATTATATTGAGCTAGAAAATTATTCAGCACTCGCTTCGAACTTTGGATACTTTGCCTGCGCATCACTCCATTGTTGCCGGCCACTGACCAGATCCGAAATCAGTCTTCCGAGCTCCGAGACCTCCAGCCGAATCTGCGACATTGTCTCCGCGTGGCGAATCGTCACAGTGTATGGAGTGGTCTTTCCGGATTCAAAGTCGACGGTGATACCGAATGGAATACCGATTTCGTCGGTACGAGCGTAGCGGCGACCGATGGTTCCAGAGCTGTCGTCCTGGAATGATATATTGATTTAAAAAGTGGAATATATGATCCTGGCTGGCATTTATAACTCTGACAGCCTCTGACCCCTACTTACCACTTTGTAGCTAAGCTCATAGTGAGAAAGCTCCTCCTTAACAGCATCCATCACTGGTACC</canonical>
            <polymorphic>AATTTAGTTTTTCCGGCATGTTCCTTTAAAGATTACGGTAGATTTCTAAAGGAACATGTTGCAAAGAGGATGGGTCTCGACGCGACACCGCCGGTTATGCATTTTTTTTCATTTTTTCAGATAATTTTCTCAGTTTTTTTGACAATTTTCACCGTTTTTTCGCCGATTTTCAACGTTCAAATTTATTATAACTCGAAAAAATGAATTTAAATTAAGAAATTCATCGAAAAAACGGTAAAAACTGTTTTTTCATAATTTTATCTCGATTTTTCAGATTTACATCGAAAAAACTGTGAAAATCGTCAAAAAATTAGAAAACTCACCTCTTTTCCGTATATGAAAAATCCAACGACTCCGAGCATCTTTTTTTCAGTTCTAAATTTTTATTTTTCATTCAATTGTTTTTCAAAATTTTCAGATATTTTCAGCCGATAAAGAACGCAATTTATTTTATGACCGATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCARATTGAAAAACAAAAAAGGAAGCACACACACTGATTAAAGAGAACCATAATAATAATTTAAACAGGCAACAAAGAAAAAAGGATTATATTGAGCTAGAAAATTATTCAGCACTCGCTTCGAACTTTGGATACTTTGCCTGCGCATCACTCCATTGTTGCCGGCCACTGACCAGATCCGAAATCAGTCTTCCGAGCTCCGAGACCTCCAGCCGAATCTGCGACATTGTCTCCGCGTGGCGAATCGTCACAGTGTATGGAGTGGTCTTTCCGGATTCAAAGTCGACGGTGATACCGAATGGAATACCGATTTCGTCGGTACGAGCGTAGCGGCGACCGATGGTTCCAGAGCTGTCGTCCTGGAATGATATATTGATTTAAAAAGTGGAATATATGATCCTGGCTGGCATTTATAACTCTGACAGCCTCTGACCCCTACTTACCACTTTGTAGCTAAGCTCATAGTGAGAAAGCTCCTCCTTAACAGCATCCATCACTGGTACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATATGAAAAATCCAACGACTC</pcr_primer_p1>
		<pcr_primer_p2>TCTTTGTTGCCTGTTTAAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTATATGAAAAATCCAACGACTCCGAGCATCTTTTTTTCAGTTCTAAATTTTTATTTTTCATTCAATTGTTTTTCAAAATTTTCAGATATTTTCAGCCGATAAAGAACGCAATTTATTTTATGACCGATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCAGATTGAAAAACAAAAAAGGAAGCACACACACTGATTAAAGAGAACCATAATAATAATTTAAACAGGCAACAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GTATATGAAAAATCCAACGACTCCGAGCATCTTTTTTTCAGTTCTAAATTTTTATTTTTCATTCAATTGTTTTTCAAAATTTTCAGATATTTTCAGCCGATAAAGAACGCAATTTATTTTATGACCGATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCARATTGAAAAACAAAAAAGGAAGCACACACACTGATTAAAGAGAACCATAATAATAATTTAAACAGGCAACAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15320</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>226131</contig_pos>
        <strand>+</strand>
        <context>AAACCARATT[A/G]AAAAACAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGACCGATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCAGATT</left_flank>
        <right_flank>AAAAACAAAAAAGGAAGCACACACACTGATTAAAGAGAACCATAATAATA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTTTTTCCGGCATGTTCCTTTAAAGATTACGGTAGATTTCTAAAGGAACATGTTGCAAAGAGGATGGGTCTCGACGCGACACCGCCGGTTATGCATTTTTTTTCATTTTTTCAGATAATTTTCTCAGTTTTTTTGACAATTTTCACCGTTTTTTCGCCGATTTTCAACGTTCAAATTTATTATAACTCGAAAAAATGAATTTAAATTAAGAAATTCATCGAAAAAACGGTAAAAACTGTTTTTTCATAATTTTATCTCGATTTTTCAGATTTACATCGAAAAAACTGTGAAAATCGTCAAAAAATTAGAAAACTCACCTCTTTTCCGTATATGAAAAATCCAACGACTCCGAGCATCTTTTTTTCAGTTCTAAATTTTTATTTTTCATTCAATTGTTTTTCAAAATTTTCAGATATTTTCAGCCGATAAAGAACGCAATTTATTTTATGACCGATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCAGATTGAAAAACAAAAAAGGAAGCACACACACTGATTAAAGAGAACCATAATAATAATTTAAACAGGCAACAAAGAAAAAAGGATTATATTGAGCTAGAAAATTATTCAGCACTCGCTTCGAACTTTGGATACTTTGCCTGCGCATCACTCCATTGTTGCCGGCCACTGACCAGATCCGAAATCAGTCTTCCGAGCTCCGAGACCTCCAGCCGAATCTGCGACATTGTCTCCGCGTGGCGAATCGTCACAGTGTATGGAGTGGTCTTTCCGGATTCAAAGTCGACGGTGATACCGAATGGAATACCGATTTCGTCGGTACGAGCGTAGCGGCGACCGATGGTTCCAGAGCTGTCGTCCTGGAATGATATATTGATTTAAAAAGTGGAATATATGATCCTGGCTGGCATTTATAACTCTGACAGCCTCTGACCCCTACTTACCACTTTGTAGCTAAGCTCATAGTGAGAAAGCTCCTCCTTAACAGCATCCATCACTGGTACCAACG</canonical>
            <polymorphic>TAGTTTTTCCGGCATGTTCCTTTAAAGATTACGGTAGATTTCTAAAGGAACATGTTGCAAAGAGGATGGGTCTCGACGCGACACCGCCGGTTATGCATTTTTTTTCATTTTTTCAGATAATTTTCTCAGTTTTTTTGACAATTTTCACCGTTTTTTCGCCGATTTTCAACGTTCAAATTTATTATAACTCGAAAAAATGAATTTAAATTAAGAAATTCATCGAAAAAACGGTAAAAACTGTTTTTTCATAATTTTATCTCGATTTTTCAGATTTACATCGAAAAAACTGTGAAAATCGTCAAAAAATTAGAAAACTCACCTCTTTTCCGTATATGAAAAATCCAACGACTCCGAGCATCTTTTTTTCAGTTCTAAATTTTTATTTTTCATTCAATTGTTTTTCAAAATTTTCAGATATTTTCAGCCGATAAAGAACGCAATTTATTTTATGACCGATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCAGATTRAAAAACAAAAAAGGAAGCACACACACTGATTAAAGAGAACCATAATAATAATTTAAACAGGCAACAAAGAAAAAAGGATTATATTGAGCTAGAAAATTATTCAGCACTCGCTTCGAACTTTGGATACTTTGCCTGCGCATCACTCCATTGTTGCCGGCCACTGACCAGATCCGAAATCAGTCTTCCGAGCTCCGAGACCTCCAGCCGAATCTGCGACATTGTCTCCGCGTGGCGAATCGTCACAGTGTATGGAGTGGTCTTTCCGGATTCAAAGTCGACGGTGATACCGAATGGAATACCGATTTCGTCGGTACGAGCGTAGCGGCGACCGATGGTTCCAGAGCTGTCGTCCTGGAATGATATATTGATTTAAAAAGTGGAATATATGATCCTGGCTGGCATTTATAACTCTGACAGCCTCTGACCCCTACTTACCACTTTGTAGCTAAGCTCATAGTGAGAAAGCTCCTCCTTAACAGCATCCATCACTGGTACCAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATATGAAAAATCCAACGACTC</pcr_primer_p1>
		<pcr_primer_p2>TCTTTGTTGCCTGTTTAAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTATATGAAAAATCCAACGACTCCGAGCATCTTTTTTTCAGTTCTAAATTTTTATTTTTCATTCAATTGTTTTTCAAAATTTTCAGATATTTTCAGCCGATAAAGAACGCAATTTATTTTATGACCGATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCAGATTGAAAAACAAAAAAGGAAGCACACACACTGATTAAAGAGAACCATAATAATAATTTAAACAGGCAACAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GTATATGAAAAATCCAACGACTCCGAGCATCTTTTTTTCAGTTCTAAATTTTTATTTTTCATTCAATTGTTTTTCAAAATTTTCAGATATTTTCAGCCGATAAAGAACGCAATTTATTTTATGACCGATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCAGATTRAAAAACAAAAAAGGAAGCACACACACTGATTAAAGAGAACCATAATAATAATTTAAACAGGCAACAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15321</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>226363</contig_pos>
        <strand>+</strand>
        <context>TCTCCGCGTG[A/G]CGAATCGTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTCCGAGCTCCGAGACCTCCAGCCGAATCTGCGACATTGTCTCCGCGTG</left_flank>
        <right_flank>CGAATCGTCACAGTGTATGGAGTGGTCTTTCCGGATTCAAAGTCGACGGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAACTGTTTTTTCATAATTTTATCTCGATTTTTCAGATTTACATCGAAAAAACTGTGAAAATCGTCAAAAAATTAGAAAACTCACCTCTTTTCCGTATATGAAAAATCCAACGACTCCGAGCATCTTTTTTTCAGTTCTAAATTTTTATTTTTCATTCAATTGTTTTTCAAAATTTTCAGATATTTTCAGCCGATAAAGAACGCAATTTATTTTATGACCGATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCAGATTGAAAAACAAAAAAGGAAGCACACACACTGATTAAAGAGAACCATAATAATAATTTAAACAGGCAACAAAGAAAAAAGGATTATATTGAGCTAGAAAATTATTCAGCACTCGCTTCGAACTTTGGATACTTTGCCTGCGCATCACTCCATTGTTGCCGGCCACTGACCAGATCCGAAATCAGTCTTCCGAGCTCCGAGACCTCCAGCCGAATCTGCGACATTGTCTCCGCGTGGCGAATCGTCACAGTGTATGGAGTGGTCTTTCCGGATTCAAAGTCGACGGTGATACCGAATGGAATACCGATTTCGTCGGTACGAGCGTAGCGGCGACCGATGGTTCCAGAGCTGTCGTCCTGGAATGATATATTGATTTAAAAAGTGGAATATATGATCCTGGCTGGCATTTATAACTCTGACAGCCTCTGACCCCTACTTACCACTTTGTAGCTAAGCTCATAGTGAGAAAGCTCCTCCTTAACAGCATCCATCACTGGTACCAACGTATCATTGGCAGAAATCGGGAGAATTGAGCACTTGATAGGGGCGACGAGTGGCTTGAATGCCAAGAATGTTCTCTGCTCATCTCCTTCTCTTTGACGGAATGAGTGCTCCAAAAGGGCGTACATGATTCTTCCAATACCATAAGATGGCTCAATGACTGATGGAGTGATCTCTTGAACATGAATCTTCTTGGAGTACTTTTTAATATTGACAAGATCAGGTGCCAATTCGAA</canonical>
            <polymorphic>AAAAACTGTTTTTTCATAATTTTATCTCGATTTTTCAGATTTACATCGAAAAAACTGTGAAAATCGTCAAAAAATTAGAAAACTCACCTCTTTTCCGTATATGAAAAATCCAACGACTCCGAGCATCTTTTTTTCAGTTCTAAATTTTTATTTTTCATTCAATTGTTTTTCAAAATTTTCAGATATTTTCAGCCGATAAAGAACGCAATTTATTTTATGACCGATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCAGATTGAAAAACAAAAAAGGAAGCACACACACTGATTAAAGAGAACCATAATAATAATTTAAACAGGCAACAAAGAAAAAAGGATTATATTGAGCTAGAAAATTATTCAGCACTCGCTTCGAACTTTGGATACTTTGCCTGCGCATCACTCCATTGTTGCCGGCCACTGACCAGATCCGAAATCAGTCTTCCGAGCTCCGAGACCTCCAGCCGAATCTGCGACATTGTCTCCGCGTGRCGAATCGTCACAGTGTATGGAGTGGTCTTTCCGGATTCAAAGTCGACGGTGATACCGAATGGAATACCGATTTCGTCGGTACGAGCGTAGCGGCGACCGATGGTTCCAGAGCTGTCGTCCTGGAATGATATATTGATTTAAAAAGTGGAATATATGATCCTGGCTGGCATTTATAACTCTGACAGCCTCTGACCCCTACTTACCACTTTGTAGCTAAGCTCATAGTGAGAAAGCTCCTCCTTAACAGCATCCATCACTGGTACCAACGTATCATTGGCAGAAATCGGGAGAATTGAGCACTTGATAGGGGCGACGAGTGGCTTGAATGCCAAGAATGTTCTCTGCTCATCTCCTTCTCTTTGACGGAATGAGTGCTCCAAAAGGGCGTACATGATTCTTCCAATACCATAAGATGGCTCAATGACTGATGGAGTGATCTCTTGAACATGAATCTTCTTGGAGTACTTTTTAATATTGACAAGATCAGGTGCCAATTCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAACAGGCAACAAAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATCGGTATTCCATTCGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAACAGGCAACAAAGAAAAAAGGATTATATTGAGCTAGAAAATTATTCAGCACTCGCTTCGAACTTTGGATACTTTGCCTGCGCATCACTCCATTGTTGCCGGCCACTGACCAGATCCGAAATCAGTCTTCCGAGCTCCGAGACCTCCAGCCGAATCTGCGACATTGTCTCCGCGTGGCGAATCGTCACAGTGTATGGAGTGGTCTTTCCGGATTCAAAGTCGACGGTGATACCGAATGGAATACCGAT</canonical_amplicon>
		<polymorphic_amplicon>TAAACAGGCAACAAAGAAAAAAGGATTATATTGAGCTAGAAAATTATTCAGCACTCGCTTCGAACTTTGGATACTTTGCCTGCGCATCACTCCATTGTTGCCGGCCACTGACCAGATCCGAAATCAGTCTTCCGAGCTCCGAGACCTCCAGCCGAATCTGCGACATTGTCTCCGCGTGRCGAATCGTCACAGTGTATGGAGTGGTCTTTCCGGATTCAAAGTCGACGGTGATACCGAATGGAATACCGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15322</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>228884</contig_pos>
        <strand>+</strand>
        <context>TTGAGATTAT[A/G]AAGTTCTGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTTGACAGCTGCGCGGAGTGGCGCAAGTTGCTGAAAAATTGAGATTAT</left_flank>
        <right_flank>AAGTTCTGGTATTACTGAGGTCTAATTTTGCGTTGCGGACGAAAATTAGA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATACTGTTCTTAATCAAATGATCCGCACGAAAGCACTCTCCATTCTTGGTGTCCTTCACCATCCAATCAGCAAACCGATCCACGTGTCCAGATGCTTTCAACACTGGTTCTGGAGTCAATGAAGTGCAGTCGACCTCAAGCATACCCTCCTCCAGAATGAAGTGTTTTCTCCACTGTTGAAGCATATTAGCCTTGAGAGCACATCCCATTGGACCGAAGTCATAGAGACCGGTGACACCACCATAAATGGCGAAGGATTGATCATAGAAGAAGCGTCTTTTCAGAAGATCCTCAAGTTTCAAACGATCGAAAGAGGCTTCCTTCGGTGCCAACGCGATTTCGGTTTCCTCGAGAAGCTTCTTTCTGGCCTTCAACTCGACGACAGCCTTATCAATATCGATTTTTGGGGCTTGTTTTGCCTTCAAGTCACGGATCAAGTCTCCATATTCTTTGACAGCTGCGCGGAGTGGCGCAAGTTGCTGAAAAATTGAGATTATAAAGTTCTGGTATTACTGAGGTCTAATTTTGCGTTGCGGACGAAAATTAGAAAGTGGGCGGAGCTTAGGTGCGGCAGCAAAATCCTTAAAGGAGCATGTTTTTTCGTTCTTTTCTGGTTTATTTTTCAGATTTTTTTTGTTTTTATGCAAATTTCTGCGAATTGCCAGGTTTTCATAAGGAAAATGGGCAAAACCCATGAAATTCGTCAAAATCAAAAGGCGAATTTCAGAAATTTTTAAAGATTTTCAGCTCGTTTAGTGCTGAAACTGTCTATGAAAATGTCTCAAAATTGGAAAAGAATTTTTTTGCAATAACCCGAAATCGATTTTGGGACATTTTTAGCTCTGAAAAGCCATAAAATGGCTCTAAAATTTTCGGTCAAAATTCAGTTTTAGGAGATTTTGAGAGACATTTTCAGCACTAAATGAGCTTCAAAATCCATGACAACTTCTAAAATCCGTATTATGATTTTCGACGAATTTCATCGTTTTTTGGACATT</canonical>
            <polymorphic>CAATACTGTTCTTAATCAAATGATCCGCACGAAAGCACTCTCCATTCTTGGTGTCCTTCACCATCCAATCAGCAAACCGATCCACGTGTCCAGATGCTTTCAACACTGGTTCTGGAGTCAATGAAGTGCAGTCGACCTCAAGCATACCCTCCTCCAGAATGAAGTGTTTTCTCCACTGTTGAAGCATATTAGCCTTGAGAGCACATCCCATTGGACCGAAGTCATAGAGACCGGTGACACCACCATAAATGGCGAAGGATTGATCATAGAAGAAGCGTCTTTTCAGAAGATCCTCAAGTTTCAAACGATCGAAAGAGGCTTCCTTCGGTGCCAACGCGATTTCGGTTTCCTCGAGAAGCTTCTTTCTGGCCTTCAACTCGACGACAGCCTTATCAATATCGATTTTTGGGGCTTGTTTTGCCTTCAAGTCACGGATCAAGTCTCCATATTCTTTGACAGCTGCGCGGAGTGGCGCAAGTTGCTGAAAAATTGAGATTATRAAGTTCTGGTATTACTGAGGTCTAATTTTGCGTTGCGGACGAAAATTAGAAAGTGGGCGGAGCTTAGGTGCGGCAGCAAAATCCTTAAAGGAGCATGTTTTTTCGTTCTTTTCTGGTTTATTTTTCAGATTTTTTTTGTTTTTATGCAAATTTCTGCGAATTGCCAGGTTTTCATAAGGAAAATGGGCAAAACCCATGAAATTCGTCAAAATCAAAAGGCGAATTTCAGAAATTTTTAAAGATTTTCAGCTCGTTTAGTGCTGAAACTGTCTATGAAAATGTCTCAAAATTGGAAAAGAATTTTTTTGCAATAACCCGAAATCGATTTTGGGACATTTTTAGCTCTGAAAAGCCATAAAATGGCTCTAAAATTTTCGGTCAAAATTCAGTTTTAGGAGATTTTGAGAGACATTTTCAGCACTAAATGAGCTTCAAAATCCATGACAACTTCTAAAATCCGTATTATGATTTTCGACGAATTTCATCGTTTTTTGGACATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCAAGTCTCCATATTCTTTGA</pcr_primer_p1>
		<pcr_primer_p2>TTATGAAAACCTGGCAATTC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GATCAAGTCTCCATATTCTTTGACAGCTGCGCGGAGTGGCGCAAGTTGCTGAAAAATTGAGATTATAAAGTTCTGGTATTACTGAGGTCTAATTTTGCGTTGCGGACGAAAATTAGAAAGTGGGCGGAGCTTAGGTGCGGCAGCAAAATCCTTAAAGGAGCATGTTTTTTCGTTCTTTTCTGGTTTATTTTTCAGATTTTTTTTGTTTTTATGCAAATTTCTGCGAATTGCCAGGTTTTCATAA</canonical_amplicon>
		<polymorphic_amplicon>GATCAAGTCTCCATATTCTTTGACAGCTGCGCGGAGTGGCGCAAGTTGCTGAAAAATTGAGATTATRAAGTTCTGGTATTACTGAGGTCTAATTTTGCGTTGCGGACGAAAATTAGAAAGTGGGCGGAGCTTAGGTGCGGCAGCAAAATCCTTAAAGGAGCATGTTTTTTCGTTCTTTTCTGGTTTATTTTTCAGATTTTTTTTGTTTTTATGCAAATTTCTGCGAATTGCCAGGTTTTCATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15323</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>228710</contig_pos>
        <strand>+</strand>
        <context>AGGCTTCCTT[C/T]GGTGCCAACG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTCTTTTCAGAAGATCCTCAAGTTTCAAACGATCGAAAGAGGCTTCCTT</left_flank>
        <right_flank>GGTGCCAACGCGATTTCGGTTTCCTCGAGAAGCTTCTTTCTGGCCTTCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGGTAAACTAATAAAATGTTGCTGATATCATGTTGAAGTTTTTATTAGTTGACAACTTTTTGATATCTTTTTTAAAGAAGTGAGATATTTATGCTCAAAGTGGACGTTCCGGGTGGTGTTCTATTAGAGTATTTACGGTATTTTACTATTTTACTCACATTCATCAACTTCTCAATACTGTTCTTAATCAAATGATCCGCACGAAAGCACTCTCCATTCTTGGTGTCCTTCACCATCCAATCAGCAAACCGATCCACGTGTCCAGATGCTTTCAACACTGGTTCTGGAGTCAATGAAGTGCAGTCGACCTCAAGCATACCCTCCTCCAGAATGAAGTGTTTTCTCCACTGTTGAAGCATATTAGCCTTGAGAGCACATCCCATTGGACCGAAGTCATAGAGACCGGTGACACCACCATAAATGGCGAAGGATTGATCATAGAAGAAGCGTCTTTTCAGAAGATCCTCAAGTTTCAAACGATCGAAAGAGGCTTCCTTCGGTGCCAACGCGATTTCGGTTTCCTCGAGAAGCTTCTTTCTGGCCTTCAACTCGACGACAGCCTTATCAATATCGATTTTTGGGGCTTGTTTTGCCTTCAAGTCACGGATCAAGTCTCCATATTCTTTGACAGCTGCGCGGAGTGGCGCAAGTTGCTGAAAAATTGAGATTATAAAGTTCTGGTATTACTGAGGTCTAATTTTGCGTTGCGGACGAAAATTAGAAAGTGGGCGGAGCTTAGGTGCGGCAGCAAAATCCTTAAAGGAGCATGTTTTTTCGTTCTTTTCTGGTTTATTTTTCAGATTTTTTTTGTTTTTATGCAAATTTCTGCGAATTGCCAGGTTTTCATAAGGAAAATGGGCAAAACCCATGAAATTCGTCAAAATCAAAAGGCGAATTTCAGAAATTTTTAAAGATTTTCAGCTCGTTTAGTGCTGAAACTGTCTATGAAAATGTCTCAAAATTGGAAAAGAATTTTTTTGCAATAACCCGAAATCGAT</canonical>
            <polymorphic>AGTGGTAAACTAATAAAATGTTGCTGATATCATGTTGAAGTTTTTATTAGTTGACAACTTTTTGATATCTTTTTTAAAGAAGTGAGATATTTATGCTCAAAGTGGACGTTCCGGGTGGTGTTCTATTAGAGTATTTACGGTATTTTACTATTTTACTCACATTCATCAACTTCTCAATACTGTTCTTAATCAAATGATCCGCACGAAAGCACTCTCCATTCTTGGTGTCCTTCACCATCCAATCAGCAAACCGATCCACGTGTCCAGATGCTTTCAACACTGGTTCTGGAGTCAATGAAGTGCAGTCGACCTCAAGCATACCCTCCTCCAGAATGAAGTGTTTTCTCCACTGTTGAAGCATATTAGCCTTGAGAGCACATCCCATTGGACCGAAGTCATAGAGACCGGTGACACCACCATAAATGGCGAAGGATTGATCATAGAAGAAGCGTCTTTTCAGAAGATCCTCAAGTTTCAAACGATCGAAAGAGGCTTCCTTYGGTGCCAACGCGATTTCGGTTTCCTCGAGAAGCTTCTTTCTGGCCTTCAACTCGACGACAGCCTTATCAATATCGATTTTTGGGGCTTGTTTTGCCTTCAAGTCACGGATCAAGTCTCCATATTCTTTGACAGCTGCGCGGAGTGGCGCAAGTTGCTGAAAAATTGAGATTATAAAGTTCTGGTATTACTGAGGTCTAATTTTGCGTTGCGGACGAAAATTAGAAAGTGGGCGGAGCTTAGGTGCGGCAGCAAAATCCTTAAAGGAGCATGTTTTTTCGTTCTTTTCTGGTTTATTTTTCAGATTTTTTTTGTTTTTATGCAAATTTCTGCGAATTGCCAGGTTTTCATAAGGAAAATGGGCAAAACCCATGAAATTCGTCAAAATCAAAAGGCGAATTTCAGAAATTTTTAAAGATTTTCAGCTCGTTTAGTGCTGAAACTGTCTATGAAAATGTCTCAAAATTGGAAAAGAATTTTTTTGCAATAACCCGAAATCGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAAGTGTTTTCTCCACTGT</pcr_primer_p1>
		<pcr_primer_p2>AAAATCGATATTGATAAGGCTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATGAAGTGTTTTCTCCACTGTTGAAGCATATTAGCCTTGAGAGCACATCCCATTGGACCGAAGTCATAGAGACCGGTGACACCACCATAAATGGCGAAGGATTGATCATAGAAGAAGCGTCTTTTCAGAAGATCCTCAAGTTTCAAACGATCGAAAGAGGCTTCCTTCGGTGCCAACGCGATTTCGGTTTCCTCGAGAAGCTTCTTTCTGGCCTTCAACTCGACGACAGCCTTATCAATATCGATTTT</canonical_amplicon>
		<polymorphic_amplicon>AATGAAGTGTTTTCTCCACTGTTGAAGCATATTAGCCTTGAGAGCACATCCCATTGGACCGAAGTCATAGAGACCGGTGACACCACCATAAATGGCGAAGGATTGATCATAGAAGAAGCGTCTTTTCAGAAGATCCTCAAGTTTCAAACGATCGAAAGAGGCTTCCTTYGGTGCCAACGCGATTTCGGTTTCCTCGAGAAGCTTCTTTCTGGCCTTCAACTCGACGACAGCCTTATCAATATCGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15324</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>228677</contig_pos>
        <strand>+</strand>
        <context>TCAGAAGATC[C/T]TCAAGTTTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCATAAATGGCGAAGGATTGATCATAGAAGAAGCGTCTTTTCAGAAGATC</left_flank>
        <right_flank>TCAAGTTTCAAACGATCGAAAGAGGCTTCCTTCGGTGCCAACGCGATTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGTATCTCATTTTCTGTGAGAGATATCGAAAAGTGGTAAACTAATAAAATGTTGCTGATATCATGTTGAAGTTTTTATTAGTTGACAACTTTTTGATATCTTTTTTAAAGAAGTGAGATATTTATGCTCAAAGTGGACGTTCCGGGTGGTGTTCTATTAGAGTATTTACGGTATTTTACTATTTTACTCACATTCATCAACTTCTCAATACTGTTCTTAATCAAATGATCCGCACGAAAGCACTCTCCATTCTTGGTGTCCTTCACCATCCAATCAGCAAACCGATCCACGTGTCCAGATGCTTTCAACACTGGTTCTGGAGTCAATGAAGTGCAGTCGACCTCAAGCATACCCTCCTCCAGAATGAAGTGTTTTCTCCACTGTTGAAGCATATTAGCCTTGAGAGCACATCCCATTGGACCGAAGTCATAGAGACCGGTGACACCACCATAAATGGCGAAGGATTGATCATAGAAGAAGCGTCTTTTCAGAAGATCCTCAAGTTTCAAACGATCGAAAGAGGCTTCCTTCGGTGCCAACGCGATTTCGGTTTCCTCGAGAAGCTTCTTTCTGGCCTTCAACTCGACGACAGCCTTATCAATATCGATTTTTGGGGCTTGTTTTGCCTTCAAGTCACGGATCAAGTCTCCATATTCTTTGACAGCTGCGCGGAGTGGCGCAAGTTGCTGAAAAATTGAGATTATAAAGTTCTGGTATTACTGAGGTCTAATTTTGCGTTGCGGACGAAAATTAGAAAGTGGGCGGAGCTTAGGTGCGGCAGCAAAATCCTTAAAGGAGCATGTTTTTTCGTTCTTTTCTGGTTTATTTTTCAGATTTTTTTTGTTTTTATGCAAATTTCTGCGAATTGCCAGGTTTTCATAAGGAAAATGGGCAAAACCCATGAAATTCGTCAAAATCAAAAGGCGAATTTCAGAAATTTTTAAAGATTTTCAGCTCGTTTAGTGCTGAAACTGTCTATGAAAATGTCTCAAAATTGG</canonical>
            <polymorphic>CATGTATCTCATTTTCTGTGAGAGATATCGAAAAGTGGTAAACTAATAAAATGTTGCTGATATCATGTTGAAGTTTTTATTAGTTGACAACTTTTTGATATCTTTTTTAAAGAAGTGAGATATTTATGCTCAAAGTGGACGTTCCGGGTGGTGTTCTATTAGAGTATTTACGGTATTTTACTATTTTACTCACATTCATCAACTTCTCAATACTGTTCTTAATCAAATGATCCGCACGAAAGCACTCTCCATTCTTGGTGTCCTTCACCATCCAATCAGCAAACCGATCCACGTGTCCAGATGCTTTCAACACTGGTTCTGGAGTCAATGAAGTGCAGTCGACCTCAAGCATACCCTCCTCCAGAATGAAGTGTTTTCTCCACTGTTGAAGCATATTAGCCTTGAGAGCACATCCCATTGGACCGAAGTCATAGAGACCGGTGACACCACCATAAATGGCGAAGGATTGATCATAGAAGAAGCGTCTTTTCAGAAGATCYTCAAGTTTCAAACGATCGAAAGAGGCTTCCTTCGGTGCCAACGCGATTTCGGTTTCCTCGAGAAGCTTCTTTCTGGCCTTCAACTCGACGACAGCCTTATCAATATCGATTTTTGGGGCTTGTTTTGCCTTCAAGTCACGGATCAAGTCTCCATATTCTTTGACAGCTGCGCGGAGTGGCGCAAGTTGCTGAAAAATTGAGATTATAAAGTTCTGGTATTACTGAGGTCTAATTTTGCGTTGCGGACGAAAATTAGAAAGTGGGCGGAGCTTAGGTGCGGCAGCAAAATCCTTAAAGGAGCATGTTTTTTCGTTCTTTTCTGGTTTATTTTTCAGATTTTTTTTGTTTTTATGCAAATTTCTGCGAATTGCCAGGTTTTCATAAGGAAAATGGGCAAAACCCATGAAATTCGTCAAAATCAAAAGGCGAATTTCAGAAATTTTTAAAGATTTTCAGCTCGTTTAGTGCTGAAACTGTCTATGAAAATGTCTCAAAATTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>443 344 99 57 57</canonical_bands>
                <polymorphic_bands>443 344 156 57</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGAAGTGTTTTCTCCACTGT</pcr_primer_p1>
		<pcr_primer_p2>AAAATCGATATTGATAAGGCTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATGAAGTGTTTTCTCCACTGTTGAAGCATATTAGCCTTGAGAGCACATCCCATTGGACCGAAGTCATAGAGACCGGTGACACCACCATAAATGGCGAAGGATTGATCATAGAAGAAGCGTCTTTTCAGAAGATCCTCAAGTTTCAAACGATCGAAAGAGGCTTCCTTCGGTGCCAACGCGATTTCGGTTTCCTCGAGAAGCTTCTTTCTGGCCTTCAACTCGACGACAGCCTTATCAATATCGATTTT</canonical_amplicon>
		<polymorphic_amplicon>AATGAAGTGTTTTCTCCACTGTTGAAGCATATTAGCCTTGAGAGCACATCCCATTGGACCGAAGTCATAGAGACCGGTGACACCACCATAAATGGCGAAGGATTGATCATAGAAGAAGCGTCTTTTCAGAAGATCYTCAAGTTTCAAACGATCGAAAGAGGCTTCCTTCGGTGCCAACGCGATTTCGGTTTCCTCGAGAAGCTTCTTTCTGGCCTTCAACTCGACGACAGCCTTATCAATATCGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15325</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>228416</contig_pos>
        <strand>+</strand>
        <context>GATCCGCACG[A/G]AAGCACTCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCACATTCATCAACTTCTCAATACTGTTCTTAATCAAATGATCCGCACG</left_flank>
        <right_flank>AAGCACTCTCCATTCTTGGTGTCCTTCACCATCCAATCAGCAAACCGATC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGACCGATTTGAGTTGGGAACATCAGATTGAAAGCGATCGGCTCGGTGAGATCGTTTCCGGTGATTGGAGACTTGAACTTGAATCTAGTGATAACTTCATGCATATCCTTATCATCGAATCCCTCGAGACGAGCCAGCACATCTTCACCGTCTTTTTTGATCTCAGCAGACACTTTCTTGTCCTATAAAAATTGACTAATAGAAGAGGAGATACCGTAAACACTCTAATAGAACGTCACCCGAATCGTCAACTTTGAGCCCATGTATCTCATTTTCTGTGAGAGATATCGAAAAGTGGTAAACTAATAAAATGTTGCTGATATCATGTTGAAGTTTTTATTAGTTGACAACTTTTTGATATCTTTTTTAAAGAAGTGAGATATTTATGCTCAAAGTGGACGTTCCGGGTGGTGTTCTATTAGAGTATTTACGGTATTTTACTATTTTACTCACATTCATCAACTTCTCAATACTGTTCTTAATCAAATGATCCGCACGAAAGCACTCTCCATTCTTGGTGTCCTTCACCATCCAATCAGCAAACCGATCCACGTGTCCAGATGCTTTCAACACTGGTTCTGGAGTCAATGAAGTGCAGTCGACCTCAAGCATACCCTCCTCCAGAATGAAGTGTTTTCTCCACTGTTGAAGCATATTAGCCTTGAGAGCACATCCCATTGGACCGAAGTCATAGAGACCGGTGACACCACCATAAATGGCGAAGGATTGATCATAGAAGAAGCGTCTTTTCAGAAGATCCTCAAGTTTCAAACGATCGAAAGAGGCTTCCTTCGGTGCCAACGCGATTTCGGTTTCCTCGAGAAGCTTCTTTCTGGCCTTCAACTCGACGACAGCCTTATCAATATCGATTTTTGGGGCTTGTTTTGCCTTCAAGTCACGGATCAAGTCTCCATATTCTTTGACAGCTGCGCGGAGTGGCGCAAGTTGCTGAAAAATTGAGATTATAAAGTTCTGGTATTACTGAGGTCTAATTTTGCG</canonical>
            <polymorphic>TGGACCGATTTGAGTTGGGAACATCAGATTGAAAGCGATCGGCTCGGTGAGATCGTTTCCGGTGATTGGAGACTTGAACTTGAATCTAGTGATAACTTCATGCATATCCTTATCATCGAATCCCTCGAGACGAGCCAGCACATCTTCACCGTCTTTTTTGATCTCAGCAGACACTTTCTTGTCCTATAAAAATTGACTAATAGAAGAGGAGATACCGTAAACACTCTAATAGAACGTCACCCGAATCGTCAACTTTGAGCCCATGTATCTCATTTTCTGTGAGAGATATCGAAAAGTGGTAAACTAATAAAATGTTGCTGATATCATGTTGAAGTTTTTATTAGTTGACAACTTTTTGATATCTTTTTTAAAGAAGTGAGATATTTATGCTCAAAGTGGACGTTCCGGGTGGTGTTCTATTAGAGTATTTACGGTATTTTACTATTTTACTCACATTCATCAACTTCTCAATACTGTTCTTAATCAAATGATCCGCACGRAAGCACTCTCCATTCTTGGTGTCCTTCACCATCCAATCAGCAAACCGATCCACGTGTCCAGATGCTTTCAACACTGGTTCTGGAGTCAATGAAGTGCAGTCGACCTCAAGCATACCCTCCTCCAGAATGAAGTGTTTTCTCCACTGTTGAAGCATATTAGCCTTGAGAGCACATCCCATTGGACCGAAGTCATAGAGACCGGTGACACCACCATAAATGGCGAAGGATTGATCATAGAAGAAGCGTCTTTTCAGAAGATCCTCAAGTTTCAAACGATCGAAAGAGGCTTCCTTCGGTGCCAACGCGATTTCGGTTTCCTCGAGAAGCTTCTTTCTGGCCTTCAACTCGACGACAGCCTTATCAATATCGATTTTTGGGGCTTGTTTTGCCTTCAAGTCACGGATCAAGTCTCCATATTCTTTGACAGCTGCGCGGAGTGGCGCAAGTTGCTGAAAAATTGAGATTATAAAGTTCTGGTATTACTGAGGTCTAATTTTGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTCACATTCATCAACTTCTCA</pcr_primer_p1>
		<pcr_primer_p2>TCTATGACTTCGGTCCAATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TACTCACATTCATCAACTTCTCAATACTGTTCTTAATCAAATGATCCGCACGAAAGCACTCTCCATTCTTGGTGTCCTTCACCATCCAATCAGCAAACCGATCCACGTGTCCAGATGCTTTCAACACTGGTTCTGGAGTCAATGAAGTGCAGTCGACCTCAAGCATACCCTCCTCCAGAATGAAGTGTTTTCTCCACTGTTGAAGCATATTAGCCTTGAGAGCACATCCCATTGGACCGAAGTCATAGA</canonical_amplicon>
		<polymorphic_amplicon>TACTCACATTCATCAACTTCTCAATACTGTTCTTAATCAAATGATCCGCACGRAAGCACTCTCCATTCTTGGTGTCCTTCACCATCCAATCAGCAAACCGATCCACGTGTCCAGATGCTTTCAACACTGGTTCTGGAGTCAATGAAGTGCAGTCGACCTCAAGCATACCCTCCTCCAGAATGAAGTGTTTTCTCCACTGTTGAAGCATATTAGCCTTGAGAGCACATCCCATTGGACCGAAGTCATAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15326</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>239027</contig_pos>
        <strand>+</strand>
        <context>TTCTCTTCAA[A/C]ACGTTCAASC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CACATGTGTCGTCTTTTCTATAACAATTTCTTCTTCCTCTTTCTCTTCAA</left_flank>
        <right_flank>ACGTTCAACCGATTTCTCGTCCTTCGTTTGGCTACCCCACATTCCAAAGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAATATTCTGAAACTCCGGAATTTGTAAAAAAAAAAAAGGAATTTTCGACATTCCGAAAGTCATTCCGAGCATTCCTGCTAAGCTCCGCTTACTCTCAAATTTTCGGTCGCTACGCGCATAGCTTCACACTGCTTATACCTCATTCTGGAAACGTCTAGCAGCCTGTAACTGTCTGTTCGGCGTCTTCACAACATTCTCAAACACAATATCTGGTTCCTCTTCTTCGTTTTCTTCTTGTTGCTTTTCGAATGACTTCTCCAAGATTGACTGCGTTGTCGAGGAAGACGTCGTTGGAATCTCCGCGACGTCATTTGAGTCACTATCATCCGAGACTTCAACGTGATGAACATGCTTCTCAACGACAATCTCATCTTCTCCACCACCGCCCGCTGCTCGTTCCGGACTGTCTCTGTTGAGATAAATGATCGAAGTAGACGTGTCTTGTAGCACATGTGTCGTCTTTTCTATAACAATTTCTTCTTCCTCTTTCTCTTCAACACGTTCAACCGATTTCTCGTCCTTCGTTTGGCTACCCCACATTCCAAAGATATTATTAAGCGGATTGAACAGGAAACCTAAATTTCTCTTATTCTTATCAGTTAGGACCTTTATCACTCAGACCTGCAAGCCCCTTGACTTTCTTCTGCCGCTTGTTCGGAGACTTCACTTCCTCAGCTAACCAGTGTCTTTTTCGCGCTAAAACTAAATTTTTGGTGACTCTAATCGAGGTTTTTAAAGAAACCTACAGTGATTATCTTCGTCTGAGTTATCAGACTGATTTGGCATATTTGATTGAATCTAATGCCAAAAACTGTGATGGGAATCCTTTAGAAGGTCTCAAAGGCTCAAAACCAAATCATAGAGATATCAATTTCAGGAAAGAAGACCTGTTTGAAATTCGAAGGAAAAACAATTTTGGAAAAGTATGTTATGGTAAAAAAGGGAAGGAACAGGGTGATAAGAAGAAGAAGAAGGTTGGCTGCTGGCGTACAACAGAT</canonical>
            <polymorphic>GGAATATTCTGAAACTCCGGAATTTGTAAAAAAAAAAAAGGAATTTTCGACATTCCGAAAGTCATTCCGAGCATTCCTGCTAAGCTCCGCTTACTCTCAAATTTTCGGTCGCTACGCGCATAGCTTCACACTGCTTATACCTCATTCTGGAAACGTCTAGCAGCCTGTAACTGTCTGTTCGGCGTCTTCACAACATTCTCAAACACAATATCTGGTTCCTCTTCTTCGTTTTCTTCTTGTTGCTTTTCGAATGACTTCTCCAAGATTGACTGCGTTGTCGAGGAAGACGTCGTTGGAATCTCCGCGACGTCATTTGAGTCACTATCATCCGAGACTTCAACGTGATGAACATGCTTCTCAACGACAATCTCATCTTCTCCACCACCGCCCGCTGCTCGTTCCGGACTGTCTCTGTTGAGATAAATGATCGAAGTAGACGTGTCTTGTAGCACATGTGTCGTCTTTTCTATAACAATTTCTTCTTCCTCTTTCTCTTCAAMACGTTCAACCGATTTCTCGTCCTTCGTTTGGCTACCCCACATTCCAAAGATATTATTAAGCGGATTGAACAGGAAACCTAAATTTCTCTTATTCTTATCAGTTAGGACCTTTATCACTCAGACCTGCAAGCCCCTTGACTTTCTTCTGCCGCTTGTTCGGAGACTTCACTTCCTCAGCTAACCAGTGTCTTTTTCGCGCTAAAACTAAATTTTTGGTGACTCTAATCGAGGTTTTTAAAGAAACCTACAGTGATTATCTTCGTCTGAGTTATCAGACTGATTTGGCATATTTGATTGAATCTAATGCCAAAAACTGTGATGGGAATCCTTTAGAAGGTCTCAAAGGCTCAAAACCAAATCATAGAGATATCAATTTCAGGAAAGAAGACCTGTTTGAAATTCGAAGGAAAAACAATTTTGGAAAAGTATGTTATGGTAAAAAAGGGAAGGAACAGGGTGATAAGAAGAAGAAGAAGGTTGGCTGCTGGCGTACAACAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 437 48 14</canonical_bands>
                <polymorphic_bands>549 437 14</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>141 128 116 77 66 60 57 52 44 41 38 37 34 31 23 19 15 10 6 3 2</canonical_bands>
                <polymorphic_bands>141 128 116 82 77 66 60 57 52 41 37 34 31 23 19 15 10 6 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTAGACGTGTCTTGTAGCACAT</pcr_primer_p1>
		<pcr_primer_p2>TTAGCTGAGGAAGTGAAGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTAGACGTGTCTTGTAGCACATGTGTCGTCTTTTCTATAACAATTTCTTCTTCCTCTTTCTCTTCAACACGTTCAACCGATTTCTCGTCCTTCGTTTGGCTACCCCACATTCCAAAGATATTATTAAGCGGATTGAACAGGAAACCTAAATTTCTCTTATTCTTATCAGTTAGGACCTTTATCACTCAGACCTGCAAGCCCCTTGACTTTCTTCTGCCGCTTGTTCGGAGACTTCACTTCCTCAGCTAA</canonical_amplicon>
		<polymorphic_amplicon>AGTAGACGTGTCTTGTAGCACATGTGTCGTCTTTTCTATAACAATTTCTTCTTCCTCTTTCTCTTCAAMACGTTCAACCGATTTCTCGTCCTTCGTTTGGCTACCCCACATTCCAAAGATATTATTAAGCGGATTGAACAGGAAACCTAAATTTCTCTTATTCTTATCAGTTAGGACCTTTATCACTCAGACCTGCAAGCCCCTTGACTTTCTTCTGCCGCTTGTTCGGAGACTTCACTTCCTCAGCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15327</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>239036</contig_pos>
        <strand>+</strand>
        <context>AMACGTTCAA[C/G]CGATTTCTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGTCTTTTCTATAACAATTTCTTCTTCCTCTTTCTCTTCAACACGTTCAA</left_flank>
        <right_flank>CGATTTCTCGTCCTTCGTTTGGCTACCCCACATTCCAAAGATATTATTAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAACTCCGGAATTTGTAAAAAAAAAAAAGGAATTTTCGACATTCCGAAAGTCATTCCGAGCATTCCTGCTAAGCTCCGCTTACTCTCAAATTTTCGGTCGCTACGCGCATAGCTTCACACTGCTTATACCTCATTCTGGAAACGTCTAGCAGCCTGTAACTGTCTGTTCGGCGTCTTCACAACATTCTCAAACACAATATCTGGTTCCTCTTCTTCGTTTTCTTCTTGTTGCTTTTCGAATGACTTCTCCAAGATTGACTGCGTTGTCGAGGAAGACGTCGTTGGAATCTCCGCGACGTCATTTGAGTCACTATCATCCGAGACTTCAACGTGATGAACATGCTTCTCAACGACAATCTCATCTTCTCCACCACCGCCCGCTGCTCGTTCCGGACTGTCTCTGTTGAGATAAATGATCGAAGTAGACGTGTCTTGTAGCACATGTGTCGTCTTTTCTATAACAATTTCTTCTTCCTCTTTCTCTTCAACACGTTCAACCGATTTCTCGTCCTTCGTTTGGCTACCCCACATTCCAAAGATATTATTAAGCGGATTGAACAGGAAACCTAAATTTCTCTTATTCTTATCAGTTAGGACCTTTATCACTCAGACCTGCAAGCCCCTTGACTTTCTTCTGCCGCTTGTTCGGAGACTTCACTTCCTCAGCTAACCAGTGTCTTTTTCGCGCTAAAACTAAATTTTTGGTGACTCTAATCGAGGTTTTTAAAGAAACCTACAGTGATTATCTTCGTCTGAGTTATCAGACTGATTTGGCATATTTGATTGAATCTAATGCCAAAAACTGTGATGGGAATCCTTTAGAAGGTCTCAAAGGCTCAAAACCAAATCATAGAGATATCAATTTCAGGAAAGAAGACCTGTTTGAAATTCGAAGGAAAAACAATTTTGGAAAAGTATGTTATGGTAAAAAAGGGAAGGAACAGGGTGATAAGAAGAAGAAGAAGGTTGGCTGCTGGCGTACAACAGATTGAAGAAAT</canonical>
            <polymorphic>TGAAACTCCGGAATTTGTAAAAAAAAAAAAGGAATTTTCGACATTCCGAAAGTCATTCCGAGCATTCCTGCTAAGCTCCGCTTACTCTCAAATTTTCGGTCGCTACGCGCATAGCTTCACACTGCTTATACCTCATTCTGGAAACGTCTAGCAGCCTGTAACTGTCTGTTCGGCGTCTTCACAACATTCTCAAACACAATATCTGGTTCCTCTTCTTCGTTTTCTTCTTGTTGCTTTTCGAATGACTTCTCCAAGATTGACTGCGTTGTCGAGGAAGACGTCGTTGGAATCTCCGCGACGTCATTTGAGTCACTATCATCCGAGACTTCAACGTGATGAACATGCTTCTCAACGACAATCTCATCTTCTCCACCACCGCCCGCTGCTCGTTCCGGACTGTCTCTGTTGAGATAAATGATCGAAGTAGACGTGTCTTGTAGCACATGTGTCGTCTTTTCTATAACAATTTCTTCTTCCTCTTTCTCTTCAACACGTTCAASCGATTTCTCGTCCTTCGTTTGGCTACCCCACATTCCAAAGATATTATTAAGCGGATTGAACAGGAAACCTAAATTTCTCTTATTCTTATCAGTTAGGACCTTTATCACTCAGACCTGCAAGCCCCTTGACTTTCTTCTGCCGCTTGTTCGGAGACTTCACTTCCTCAGCTAACCAGTGTCTTTTTCGCGCTAAAACTAAATTTTTGGTGACTCTAATCGAGGTTTTTAAAGAAACCTACAGTGATTATCTTCGTCTGAGTTATCAGACTGATTTGGCATATTTGATTGAATCTAATGCCAAAAACTGTGATGGGAATCCTTTAGAAGGTCTCAAAGGCTCAAAACCAAATCATAGAGATATCAATTTCAGGAAAGAAGACCTGTTTGAAATTCGAAGGAAAAACAATTTTGGAAAAGTATGTTATGGTAAAAAAGGGAAGGAACAGGGTGATAAGAAGAAGAAGAAGGTTGGCTGCTGGCGTACAACAGATTGAAGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTAGACGTGTCTTGTAGCACAT</pcr_primer_p1>
		<pcr_primer_p2>TTAGCTGAGGAAGTGAAGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTAGACGTGTCTTGTAGCACATGTGTCGTCTTTTCTATAACAATTTCTTCTTCCTCTTTCTCTTCAACACGTTCAACCGATTTCTCGTCCTTCGTTTGGCTACCCCACATTCCAAAGATATTATTAAGCGGATTGAACAGGAAACCTAAATTTCTCTTATTCTTATCAGTTAGGACCTTTATCACTCAGACCTGCAAGCCCCTTGACTTTCTTCTGCCGCTTGTTCGGAGACTTCACTTCCTCAGCTAA</canonical_amplicon>
		<polymorphic_amplicon>AGTAGACGTGTCTTGTAGCACATGTGTCGTCTTTTCTATAACAATTTCTTCTTCCTCTTTCTCTTCAACACGTTCAASCGATTTCTCGTCCTTCGTTTGGCTACCCCACATTCCAAAGATATTATTAAGCGGATTGAACAGGAAACCTAAATTTCTCTTATTCTTATCAGTTAGGACCTTTATCACTCAGACCTGCAAGCCCCTTGACTTTCTTCTGCCGCTTGTTCGGAGACTTCACTTCCTCAGCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15328</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>242560</contig_pos>
        <strand>+</strand>
        <context>TGGTTCATTT[G/T]CCATATAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAATAAAAATTATTTGTTATCTCTCTAACTCTATGTTCATTGGTTCATTT</left_flank>
        <right_flank>CCATATAATTTTTTCTTCTCTTCCTCATCGTAATATTTCCTTCTAAATTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCGTCAAGTGGATTTTAGCTCCGAAAATTGCAAAACCAACTAAATATCAGGTTTGTACTCAAAATCAATGTTTAAAATTCGATATTTCCCTTTAAATCAAAATTTTTAGGTTCCTGCTCTTGAGACAAAGGACAGAACGATGGAGGAAGTCCGTCGATTGCGCGATGAAGAGAATAGATGTCTGGTTGTAGTCCATGACAAAGTATACTGATAAAATATGTTTTTTATTCAATCTTTTGCTTTTTTTTCAGATCTACGACTTCTCAACATCCCAAGATTTGTACGACAAGAATCGTGACGTCTTCGAGGGCAAGGCCTGTGGCGACGAGTGGGTGGCGATCTGTGCCCGCAAGTTTCCTCACGTCGGAAACGTTTTGAAGCATTGAATCATCTTGTTATCAACTTATCAGCTAGTTAACGACGGGTTTCTTTCTTTGTTTGCCGGTTTAATAAAAATTATTTGTTATCTCTCTAACTCTATGTTCATTGGTTCATTTTCCATATAATTTTTTCTTCTCTTCCTCATCGTAATATTTCCTTCTAAATTAATTTATAAATTCCGTTCCCTCTTCAGATCTCAAAAATGGCTATGATGTACCCGTTCCACGTCGCCCAACCTCCTCTTAACTGGTCAGAGCACCTGTGGGTTCCTGAAATTTCCCCTGCCAAAGAGTCATTCATCACCTCGATCTGTGAGCATCGACAGGCGCAATGGGTAAAAAAGAAAGCTTTTCTTCACTAATATTCAATCGATAACTTCTCTTTCAGGACAACCAGGATCTTCTGAAACACCTCCAAGACAGCGTGGCAATTCTTCAGAAGGAGGATCAACGTTTGGCTCCAGCTGCGGCGCCAGCGGCTCCAGTCAACGCTCAGAATAACTGATTTTTCAATTTATTTCCTTCTATTTTGTATATACATAAAGTCTGAATTTCATAATTTCTTTGCCTAAAATTATGGATTACCATGCCTAATACTTTATTTTTCCCCCATTTTTT</canonical>
            <polymorphic>AATCGTCAAGTGGATTTTAGCTCCGAAAATTGCAAAACCAACTAAATATCAGGTTTGTACTCAAAATCAATGTTTAAAATTCGATATTTCCCTTTAAATCAAAATTTTTAGGTTCCTGCTCTTGAGACAAAGGACAGAACGATGGAGGAAGTCCGTCGATTGCGCGATGAAGAGAATAGATGTCTGGTTGTAGTCCATGACAAAGTATACTGATAAAATATGTTTTTTATTCAATCTTTTGCTTTTTTTTCAGATCTACGACTTCTCAACATCCCAAGATTTGTACGACAAGAATCGTGACGTCTTCGAGGGCAAGGCCTGTGGCGACGAGTGGGTGGCGATCTGTGCCCGCAAGTTTCCTCACGTCGGAAACGTTTTGAAGCATTGAATCATCTTGTTATCAACTTATCAGCTAGTTAACGACGGGTTTCTTTCTTTGTTTGCCGGTTTAATAAAAATTATTTGTTATCTCTCTAACTCTATGTTCATTGGTTCATTTKCCATATAATTTTTTCTTCTCTTCCTCATCGTAATATTTCCTTCTAAATTAATTTATAAATTCCGTTCCCTCTTCAGATCTCAAAAATGGCTATGATGTACCCGTTCCACGTCGCCCAACCTCCTCTTAACTGGTCAGAGCACCTGTGGGTTCCTGAAATTTCCCCTGCCAAAGAGTCATTCATCACCTCGATCTGTGAGCATCGACAGGCGCAATGGGTAAAAAAGAAAGCTTTTCTTCACTAATATTCAATCGATAACTTCTCTTTCAGGACAACCAGGATCTTCTGAAACACCTCCAAGACAGCGTGGCAATTCTTCAGAAGGAGGATCAACGTTTGGCTCCAGCTGCGGCGCCAGCGGCTCCAGTCAACGCTCAGAATAACTGATTTTTCAATTTATTTCCTTCTATTTTGTATATACATAAAGTCTGAATTTCATAATTTCTTTGCCTAAAATTATGGATTACCATGCCTAATACTTTATTTTTCCCCCATTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCTTGTTATCAACTTATCAGCTA</pcr_primer_p1>
		<pcr_primer_p2>TCTGACCAGTTAAGAGGAGGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CATCTTGTTATCAACTTATCAGCTAGTTAACGACGGGTTTCTTTCTTTGTTTGCCGGTTTAATAAAAATTATTTGTTATCTCTCTAACTCTATGTTCATTGGTTCATTTTCCATATAATTTTTTCTTCTCTTCCTCATCGTAATATTTCCTTCTAAATTAATTTATAAATTCCGTTCCCTCTTCAGATCTCAAAAATGGCTATGATGTACCCGTTCCACGTCGCCCAACCTCCTCTTAACTGGTCAGA</canonical_amplicon>
		<polymorphic_amplicon>CATCTTGTTATCAACTTATCAGCTAGTTAACGACGGGTTTCTTTCTTTGTTTGCCGGTTTAATAAAAATTATTTGTTATCTCTCTAACTCTATGTTCATTGGTTCATTTKCCATATAATTTTTTCTTCTCTTCCTCATCGTAATATTTCCTTCTAAATTAATTTATAAATTCCGTTCCCTCTTCAGATCTCAAAAATGGCTATGATGTACCCGTTCCACGTCGCCCAACCTCCTCTTAACTGGTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15329</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>242309</contig_pos>
        <strand>+</strand>
        <context>TTGCTTTTTT[A/T]TCAGATCTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACAAAGTATACTGATAAAATATGTTTTTTATTCAATCTTTTGCTTTTTT</left_flank>
        <right_flank>TCAGATCTACGACTTCTCAACATCCCAAGATTTGTACGACAAGAATCGTG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCATGTTTCAGCTCATCAGAAAATCCCGACGCGAATTCGAAAAGGTGCGGTGGAGCGCGATTGCTGGCAGTGAGCAAAGGGCCGAAGTTTCTTAGTCCGCCGGCGTGGAGAATAATTTTTTTTTCTTTCAAAACATTTTTTTCTTGCGGCTAAATACCTCTCGATTTTCGCAGAAAATGCAAATTGGCGAATATGAACCCACACCCATCGATGTCACCTTGTTTGTGATAATGTTGGTGGCTCTCAAGCGAATCGTCAAGTGGATTTTAGCTCCGAAAATTGCAAAACCAACTAAATATCAGGTTTGTACTCAAAATCAATGTTTAAAATTCGATATTTCCCTTTAAATCAAAATTTTTAGGTTCCTGCTCTTGAGACAAAGGACAGAACGATGGAGGAAGTCCGTCGATTGCGCGATGAAGAGAATAGATGTCTGGTTGTAGTCCATGACAAAGTATACTGATAAAATATGTTTTTTATTCAATCTTTTGCTTTTTTTTCAGATCTACGACTTCTCAACATCCCAAGATTTGTACGACAAGAATCGTGACGTCTTCGAGGGCAAGGCCTGTGGCGACGAGTGGGTGGCGATCTGTGCCCGCAAGTTTCCTCACGTCGGAAACGTTTTGAAGCATTGAATCATCTTGTTATCAACTTATCAGCTAGTTAACGACGGGTTTCTTTCTTTGTTTGCCGGTTTAATAAAAATTATTTGTTATCTCTCTAACTCTATGTTCATTGGTTCATTTTCCATATAATTTTTTCTTCTCTTCCTCATCGTAATATTTCCTTCTAAATTAATTTATAAATTCCGTTCCCTCTTCAGATCTCAAAAATGGCTATGATGTACCCGTTCCACGTCGCCCAACCTCCTCTTAACTGGTCAGAGCACCTGTGGGTTCCTGAAATTTCCCCTGCCAAAGAGTCATTCATCACCTCGATCTGTGAGCATCGACAGGCGCAATGGGTAAAAAAGAAAGCTTTTCTTCACTAATATTC</canonical>
            <polymorphic>CTCATGTTTCAGCTCATCAGAAAATCCCGACGCGAATTCGAAAAGGTGCGGTGGAGCGCGATTGCTGGCAGTGAGCAAAGGGCCGAAGTTTCTTAGTCCGCCGGCGTGGAGAATAATTTTTTTTTCTTTCAAAACATTTTTTTCTTGCGGCTAAATACCTCTCGATTTTCGCAGAAAATGCAAATTGGCGAATATGAACCCACACCCATCGATGTCACCTTGTTTGTGATAATGTTGGTGGCTCTCAAGCGAATCGTCAAGTGGATTTTAGCTCCGAAAATTGCAAAACCAACTAAATATCAGGTTTGTACTCAAAATCAATGTTTAAAATTCGATATTTCCCTTTAAATCAAAATTTTTAGGTTCCTGCTCTTGAGACAAAGGACAGAACGATGGAGGAAGTCCGTCGATTGCGCGATGAAGAGAATAGATGTCTGGTTGTAGTCCATGACAAAGTATACTGATAAAATATGTTTTTTATTCAATCTTTTGCTTTTTTWTCAGATCTACGACTTCTCAACATCCCAAGATTTGTACGACAAGAATCGTGACGTCTTCGAGGGCAAGGCCTGTGGCGACGAGTGGGTGGCGATCTGTGCCCGCAAGTTTCCTCACGTCGGAAACGTTTTGAAGCATTGAATCATCTTGTTATCAACTTATCAGCTAGTTAACGACGGGTTTCTTTCTTTGTTTGCCGGTTTAATAAAAATTATTTGTTATCTCTCTAACTCTATGTTCATTGGTTCATTTTCCATATAATTTTTTCTTCTCTTCCTCATCGTAATATTTCCTTCTAAATTAATTTATAAATTCCGTTCCCTCTTCAGATCTCAAAAATGGCTATGATGTACCCGTTCCACGTCGCCCAACCTCCTCTTAACTGGTCAGAGCACCTGTGGGTTCCTGAAATTTCCCCTGCCAAAGAGTCATTCATCACCTCGATCTGTGAGCATCGACAGGCGCAATGGGTAAAAAAGAAAGCTTTTCTTCACTAATATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAGATGTCTGGTTGTAGTCCA</pcr_primer_p1>
		<pcr_primer_p2>TCGTTAACTAGCTGATAAGTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATAGATGTCTGGTTGTAGTCCATGACAAAGTATACTGATAAAATATGTTTTTTATTCAATCTTTTGCTTTTTTTTCAGATCTACGACTTCTCAACATCCCAAGATTTGTACGACAAGAATCGTGACGTCTTCGAGGGCAAGGCCTGTGGCGACGAGTGGGTGGCGATCTGTGCCCGCAAGTTTCCTCACGTCGGAAACGTTTTGAAGCATTGAATCATCTTGTTATCAACTTATCAGCTAGTTAACGA</canonical_amplicon>
		<polymorphic_amplicon>AATAGATGTCTGGTTGTAGTCCATGACAAAGTATACTGATAAAATATGTTTTTTATTCAATCTTTTGCTTTTTTWTCAGATCTACGACTTCTCAACATCCCAAGATTTGTACGACAAGAATCGTGACGTCTTCGAGGGCAAGGCCTGTGGCGACGAGTGGGTGGCGATCTGTGCCCGCAAGTTTCCTCACGTCGGAAACGTTTTGAAGCATTGAATCATCTTGTTATCAACTTATCAGCTAGTTAACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15330</snp_id>
        <super_contig>c008701363.Contig1</super_contig>
        <contig_pos>45585</contig_pos>
        <strand>+</strand>
        <context>CAAAAACTTT[C/G]TATAAACAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTTTGTCTGCAAAAAAGCAGGCAGTAAGGGCAGCCGAACAAAAACTTT</left_flank>
        <right_flank>TATAAACAATCCATAAACAACTACAGTTTTTGGCTCAAAATTCAAATTAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAAGGCTCTAGAATTATTTTCTGTTTCTTATTTCCCAAGACAATGAAACCCCACCTTTTTATACTCTTCATACCCTACTATCTTGAATCCCAATAAGATTACTGTAAACACCCAACTCAATAAAGTAACTCCGTCTGTTAGTTGTTGGGCACGAGAAACGATCCTCACATAAAACATTGAAGCGACCCTGTTGAAATAAAAAGCAGTGTAAAATAGAAGGATCGAAATTTTGGGAAGGATTCGAAGGATCTGAAATTTAGTTTTTTTCGAGGAAAGATTTCAACTTTGAGTTTATTTATCTCGGTTCCTGTGAAAGACATCAAAGAGTGATTAACTGATAAAATATGTTTGAGGTTACAATAAACAATTAATCAGTTGACCACTTTTTGATATCTTTTAGAAGAAATGAGATATGCGGGTTTAAAGACCTACCAGAGCATCCTCGTATTTTTTGTCTGCAAAAAAGCAGGCAGTAAGGGCAGCCGAACAAAAACTTTCTATAAACAATCCATAAACAACTACAGTTTTTGGCTCAAAATTCAAATTATCAAATTGATAATATCCAGTTGAATAAACAAGTGTTGCACCGAGAAAAGCTATATACAACGCCTTGGTTAGTGATAAATTGAATGATAAGGAAAACGATAAAAAATATGTGTAAAACACCCCAAAACCAGTGAATTGGGAGCAAGTGAATATGGATTCCAATGGAGAGTCTAGCATGATTTTCCATTAAAATGTAGAAAAAAATTATGAAATATTTTCGTTTTGGCCGCTATAGACGAATTTTGGAGTCTCACACAAATTGTATCCGAAAATGTGGGAGGAGTCAGAAATTCTTGATGGGATTATATCTAGACAGCCAAAGTGATTTTTTCTGTGCTTTGAAATGTCATGGCAGCTGTAATTTTTTCAATCTTTCAGTGCTACTCCAAAAATTGCTGATCAACATATCAATCAGAAAAAAGATGGTAAGTATGTTATGAACTTCTAGGTCC</canonical>
            <polymorphic>TCCAAGGCTCTAGAATTATTTTCTGTTTCTTATTTCCCAAGACAATGAAACCCCACCTTTTTATACTCTTCATACCCTACTATCTTGAATCCCAATAAGATTACTGTAAACACCCAACTCAATAAAGTAACTCCGTCTGTTAGTTGTTGGGCACGAGAAACGATCCTCACATAAAACATTGAAGCGACCCTGTTGAAATAAAAAGCAGTGTAAAATAGAAGGATCGAAATTTTGGGAAGGATTCGAAGGATCTGAAATTTAGTTTTTTTCGAGGAAAGATTTCAACTTTGAGTTTATTTATCTCGGTTCCTGTGAAAGACATCAAAGAGTGATTAACTGATAAAATATGTTTGAGGTTACAATAAACAATTAATCAGTTGACCACTTTTTGATATCTTTTAGAAGAAATGAGATATGCGGGTTTAAAGACCTACCAGAGCATCCTCGTATTTTTTGTCTGCAAAAAAGCAGGCAGTAAGGGCAGCCGAACAAAAACTTTSTATAAACAATCCATAAACAACTACAGTTTTTGGCTCAAAATTCAAATTATCAAATTGATAATATCCAGTTGAATAAACAAGTGTTGCACCGAGAAAAGCTATATACAACGCCTTGGTTAGTGATAAATTGAATGATAAGGAAAACGATAAAAAATATGTGTAAAACACCCCAAAACCAGTGAATTGGGAGCAAGTGAATATGGATTCCAATGGAGAGTCTAGCATGATTTTCCATTAAAATGTAGAAAAAAATTATGAAATATTTTCGTTTTGGCCGCTATAGACGAATTTTGGAGTCTCACACAAATTGTATCCGAAAATGTGGGAGGAGTCAGAAATTCTTGATGGGATTATATCTAGACAGCCAAAGTGATTTTTTCTGTGCTTTGAAATGTCATGGCAGCTGTAATTTTTTCAATCTTTCAGTGCTACTCCAAAAATTGCTGATCAACATATCAATCAGAAAAAAGATGGTAAGTATGTTATGAACTTCTAGGTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTACCAGAGCATCCTCGTATT</pcr_primer_p1>
		<pcr_primer_p2>TTTGGGGTGTTTTACACATATT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CTACCAGAGCATCCTCGTATTTTTTGTCTGCAAAAAAGCAGGCAGTAAGGGCAGCCGAACAAAAACTTTCTATAAACAATCCATAAACAACTACAGTTTTTGGCTCAAAATTCAAATTATCAAATTGATAATATCCAGTTGAATAAACAAGTGTTGCACCGAGAAAAGCTATATACAACGCCTTGGTTAGTGATAAATTGAATGATAAGGAAAACGATAAAAAATATGTGTAAAACACCCCAAA</canonical_amplicon>
		<polymorphic_amplicon>CTACCAGAGCATCCTCGTATTTTTTGTCTGCAAAAAAGCAGGCAGTAAGGGCAGCCGAACAAAAACTTTSTATAAACAATCCATAAACAACTACAGTTTTTGGCTCAAAATTCAAATTATCAAATTGATAATATCCAGTTGAATAAACAAGTGTTGCACCGAGAAAAGCTATATACAACGCCTTGGTTAGTGATAAATTGAATGATAAGGAAAACGATAAAAAATATGTGTAAAACACCCCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15331</snp_id>
        <super_contig>c008701363.Contig1</super_contig>
        <contig_pos>65449</contig_pos>
        <strand>+</strand>
        <context>AAACAAAGCT[A/T]GACTTATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAAAAGAAAAATTCAGAACTTTTCTGGTTTTCAGGGATAAACAAAGCT</left_flank>
        <right_flank>GACTTATTTTTTGTCTTCTTCAAAAAAGAAAAGAAAATCAAGAAATGACA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAAGGGGTGTTTTGGGAAGATGAAGAAGGGAAAATGACGATCAATCATTTTTCTGTTGTCTTCTGCTTATTTTGAATAAAGTCATCGAGAACATGGAAAAGAAGAAGGAAGGGGGAACATGTAGAACGTTTTGCTCTTCTTAAAAGAAAAATTTAAAAAAAATTAGATTTTGCCCTTCTTCTTGTCCTTATCGTAATATTAAAAAACTAGAAAAATACATGTTTGGGATCCTAAAAGCCACAAAAAAAGGTTCCTGAACGTTTTCTCCATTCGTTGCCTTTATATATCTTGAATCAGAAGAAGAAGAAAGGAAAAGTTTTTAGGAAGTTGTATGGTTCATGTTTTGCCTGAATAAATTCAATAAAATGGGGGCAAAGCTTCTGGGATTTTTGGATTTTTTTCGTTTGGGATAATGGATAATGGATAAATAGAATCAAGGAAAAGAAAAAAAAAAGAAAAATTCAGAACTTTTCTGGTTTTCAGGGATAAACAAAGCTTGACTTATTTTTTGTCTTCTTCAAAAAAGAAAAGAAAATCAAGAAATGACAAAAATGACAAATCAGCACGAAAATGTTTTACAGTGGCGAGAAGTGGTGAGGAGAATTTTTTCGAACATTCATAACTCTGTTCAAATTCGCTCAATTGACTTGAAATTTCGCATGAGAATAGCTGTAAAATCCAAAAACATAAAAATCGGTTTTTTGAAAACTTCTCGTTTTCAGAATTTTCAGAGCAGTTTCAGATGTAACAGTGGCCCAAGAATCCAAAAAAAAAACTTTTTTTCAGAATTTTTTCTGGTTTTGATGTTAGATGTCAAATGATTTACAATGTCCAAACATGCACCAAAAACGTTTTGAAGGATTTTTGAAGTCGGGCTCGAGTTATGATGCTCAGAGCACATAAGATATGTGTCGGCATTTTTGCCATAACTCATCTGAAAATGTATTTTTGAGGCTCAAAATTTTGTAAATTATGTGTTTTGAGTTGTTTATCAGTTT</canonical>
            <polymorphic>AAGAAGGGGTGTTTTGGGAAGATGAAGAAGGGAAAATGACGATCAATCATTTTTCTGTTGTCTTCTGCTTATTTTGAATAAAGTCATCGAGAACATGGAAAAGAAGAAGGAAGGGGGAACATGTAGAACGTTTTGCTCTTCTTAAAAGAAAAATTTAAAAAAAATTAGATTTTGCCCTTCTTCTTGTCCTTATCGTAATATTAAAAAACTAGAAAAATACATGTTTGGGATCCTAAAAGCCACAAAAAAAGGTTCCTGAACGTTTTCTCCATTCGTTGCCTTTATATATCTTGAATCAGAAGAAGAAGAAAGGAAAAGTTTTTAGGAAGTTGTATGGTTCATGTTTTGCCTGAATAAATTCAATAAAATGGGGGCAAAGCTTCTGGGATTTTTGGATTTTTTTCGTTTGGGATAATGGATAATGGATAAATAGAATCAAGGAAAAGAAAAAAAAAAGAAAAATTCAGAACTTTTCTGGTTTTCAGGGATAAACAAAGCTWGACTTATTTTTTGTCTTCTTCAAAAAAGAAAAGAAAATCAAGAAATGACAAAAATGACAAATCAGCACGAAAATGTTTTACAGTGGCGAGAAGTGGTGAGGAGAATTTTTTCGAACATTCATAACTCTGTTCAAATTCGCTCAATTGACTTGAAATTTCGCATGAGAATAGCTGTAAAATCCAAAAACATAAAAATCGGTTTTTTGAAAACTTCTCGTTTTCAGAATTTTCAGAGCAGTTTCAGATGTAACAGTGGCCCAAGAATCCAAAAAAAAAACTTTTTTTCAGAATTTTTTCTGGTTTTGATGTTAGATGTCAAATGATTTACAATGTCCAAACATGCACCAAAAACGTTTTGAAGGATTTTTGAAGTCGGGCTCGAGTTATGATGCTCAGAGCACATAAGATATGTGTCGGCATTTTTGCCATAACTCATCTGAAAATGTATTTTTGAGGCTCAAAATTTTGTAAATTATGTGTTTTGAGTTGTTTATCAGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 377 118</canonical_bands>
                <polymorphic_bands>623 377</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGAAAGGAAAAGTTTTTAGGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGTCATTTCTTGATTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGAAAGGAAAAGTTTTTAGGAAGTTGTATGGTTCATGTTTTGCCTGAATAAATTCAATAAAATGGGGGCAAAGCTTCTGGGATTTTTGGATTTTTTTCGTTTGGGATAATGGATAATGGATAAATAGAATCAAGGAAAAGAAAAAAAAAAGAAAAATTCAGAACTTTTCTGGTTTTCAGGGATAAACAAAGCTTGACTTATTTTTTGTCTTCTTCAAAAAAGAAAAGAAAATCAAGAAATGACAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAAGAAAGGAAAAGTTTTTAGGAAGTTGTATGGTTCATGTTTTGCCTGAATAAATTCAATAAAATGGGGGCAAAGCTTCTGGGATTTTTGGATTTTTTTCGTTTGGGATAATGGATAATGGATAAATAGAATCAAGGAAAAGAAAAAAAAAAGAAAAATTCAGAACTTTTCTGGTTTTCAGGGATAAACAAAGCTWGACTTATTTTTTGTCTTCTTCAAAAAAGAAAAGAAAATCAAGAAATGACAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15332</snp_id>
        <super_contig>c008701363.Contig1</super_contig>
        <contig_pos>65235</contig_pos>
        <strand>+</strand>
        <context>TTGCYTKTAT[A/T]TRTCTTGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAGCCACAAAAAAAGGTTCCTGAACGTTTTCTCCATTCGTTGCCTTTAT</left_flank>
        <right_flank>TATCTTGAATCAGAAGAAGAAGAAAGGAAAAGTTTTTAGGAAGTTGTATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACACTTTATTCTGGCCGCGCGCGCGGGCAGATGGCGTTAGAGAGAATAGAGTGCAGAGACGCAGAGAAAAATAGAAATAGAGGGGTCCATTGGGAAAGAAGAAGAAGAAGATGGCTTCCGAGTGGGGAAGAGCAGATGGGACAGCATTTGGGGGTATGGAAAATAGGAAAAGCCAGACGAAGAATAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGTGTTTTGGGAAGATGAAGAAGGGAAAATGACGATCAATCATTTTTCTGTTGTCTTCTGCTTATTTTGAATAAAGTCATCGAGAACATGGAAAAGAAGAAGGAAGGGGGAACATGTAGAACGTTTTGCTCTTCTTAAAAGAAAAATTTAAAAAAAATTAGATTTTGCCCTTCTTCTTGTCCTTATCGTAATATTAAAAAACTAGAAAAATACATGTTTGGGATCCTAAAAGCCACAAAAAAAGGTTCCTGAACGTTTTCTCCATTCGTTGCCTTTATATATCTTGAATCAGAAGAAGAAGAAAGGAAAAGTTTTTAGGAAGTTGTATGGTTCATGTTTTGCCTGAATAAATTCAATAAAATGGGGGCAAAGCTTCTGGGATTTTTGGATTTTTTTCGTTTGGGATAATGGATAATGGATAAATAGAATCAAGGAAAAGAAAAAAAAAAGAAAAATTCAGAACTTTTCTGGTTTTCAGGGATAAACAAAGCTTGACTTATTTTTTGTCTTCTTCAAAAAAGAAAAGAAAATCAAGAAATGACAAAAATGACAAATCAGCACGAAAATGTTTTACAGTGGCGAGAAGTGGTGAGGAGAATTTTTTCGAACATTCATAACTCTGTTCAAATTCGCTCAATTGACTTGAAATTTCGCATGAGAATAGCTGTAAAATCCAAAAACATAAAAATCGGTTTTTTGAAAACTTCTCGTTTTCAGAATTTTCAGAGCAGTTTCAGATGTAACAGTGGCCCAAGAATCCAAAAAAAAAACTTTTTTTC</canonical>
            <polymorphic>CCACACTTTATTCTGGCCGCGCGCGCGGGCAGATGGCGTTAGAGAGAATAGAGTGCAGAGACGCAGAGAAAAATAGAAATAGAGGGGTCCATTGGGAAAGAAGAAGAAGAAGATGGCTTCCGAGTGGGGAAGAGCAGATGGGACAGCATTTGGGGGTATGGAAAATAGGAAAAGCCAGACGAAGAATAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGTGTTTTGGGAAGATGAAGAAGGGAAAATGACGATCAATCATTTTTCTGTTGTCTTCTGCTTATTTTGAATAAAGTCATCGAGAACATGGAAAAGAAGAAGGAAGGGGGAACATGTAGAACGTTTTGCTCTTCTTAAAAGAAAAATTTAAAAAAAATTAGATTTTGCCCTTCTTCTTGTCCTTATCGTAATATTAAAAAACTAGAAAAATACATGTTTGGGATCCTAAAAGCCACAAAAAAAGGTTCCTGAACGTTTTCTCCATTCGTTGCCTTTATWTATCTTGAATCAGAAGAAGAAGAAAGGAAAAGTTTTTAGGAAGTTGTATGGTTCATGTTTTGCCTGAATAAATTCAATAAAATGGGGGCAAAGCTTCTGGGATTTTTGGATTTTTTTCGTTTGGGATAATGGATAATGGATAAATAGAATCAAGGAAAAGAAAAAAAAAAGAAAAATTCAGAACTTTTCTGGTTTTCAGGGATAAACAAAGCTTGACTTATTTTTTGTCTTCTTCAAAAAAGAAAAGAAAATCAAGAAATGACAAAAATGACAAATCAGCACGAAAATGTTTTACAGTGGCGAGAAGTGGTGAGGAGAATTTTTTCGAACATTCATAACTCTGTTCAAATTCGCTCAATTGACTTGAAATTTCGCATGAGAATAGCTGTAAAATCCAAAAACATAAAAATCGGTTTTTTGAAAACTTCTCGTTTTCAGAATTTTCAGAGCAGTTTCAGATGTAACAGTGGCCCAAGAATCCAAAAAAAAAACTTTTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTAGAACGTTTTGCTCTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTATTGAATTTATTCAGGCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATGTAGAACGTTTTGCTCTTCTTAAAAGAAAAATTTAAAAAAAATTAGATTTTGCCCTTCTTCTTGTCCTTATCGTAATATTAAAAAACTAGAAAAATACATGTTTGGGATCCTAAAAGCCACAAAAAAAGGTTCCTGAACGTTTTCTCCATTCGTTGCCTTTATATATCTTGAATCAGAAGAAGAAGAAAGGAAAAGTTTTTAGGAAGTTGTATGGTTCATGTTTTGCCTGAATAAATTCAATAA</canonical_amplicon>
		<polymorphic_amplicon>ATGTAGAACGTTTTGCTCTTCTTAAAAGAAAAATTTAAAAAAAATTAGATTTTGCCCTTCTTCTTGTCCTTATCGTAATATTAAAAAACTAGAAAAATACATGTTTGGGATCCTAAAAGCCACAAAAAAAGGTTCCTGAACGTTTTCTCCATTCGTTGCCTTTATWTATCTTGAATCAGAAGAAGAAGAAAGGAAAAGTTTTTAGGAAGTTGTATGGTTCATGTTTTGCCTGAATAAATTCAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15334</snp_id>
        <super_contig>c008701363.Contig1</super_contig>
        <contig_pos>65231</contig_pos>
        <strand>+</strand>
        <context>TTCGTTGCYT[G/T]TATWTRTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCTAAAAGCCACAAAAAAAGGTTCCTGAACGTTTTCTCCATTCGTTGCCT</left_flank>
        <right_flank>TATATATCTTGAATCAGAAGAAGAAGAAAGGAAAAGTTTTTAGGAAGTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCCCACACTTTATTCTGGCCGCGCGCGCGGGCAGATGGCGTTAGAGAGAATAGAGTGCAGAGACGCAGAGAAAAATAGAAATAGAGGGGTCCATTGGGAAAGAAGAAGAAGAAGATGGCTTCCGAGTGGGGAAGAGCAGATGGGACAGCATTTGGGGGTATGGAAAATAGGAAAAGCCAGACGAAGAATAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGTGTTTTGGGAAGATGAAGAAGGGAAAATGACGATCAATCATTTTTCTGTTGTCTTCTGCTTATTTTGAATAAAGTCATCGAGAACATGGAAAAGAAGAAGGAAGGGGGAACATGTAGAACGTTTTGCTCTTCTTAAAAGAAAAATTTAAAAAAAATTAGATTTTGCCCTTCTTCTTGTCCTTATCGTAATATTAAAAAACTAGAAAAATACATGTTTGGGATCCTAAAAGCCACAAAAAAAGGTTCCTGAACGTTTTCTCCATTCGTTGCCTTTATATATCTTGAATCAGAAGAAGAAGAAAGGAAAAGTTTTTAGGAAGTTGTATGGTTCATGTTTTGCCTGAATAAATTCAATAAAATGGGGGCAAAGCTTCTGGGATTTTTGGATTTTTTTCGTTTGGGATAATGGATAATGGATAAATAGAATCAAGGAAAAGAAAAAAAAAAGAAAAATTCAGAACTTTTCTGGTTTTCAGGGATAAACAAAGCTTGACTTATTTTTTGTCTTCTTCAAAAAAGAAAAGAAAATCAAGAAATGACAAAAATGACAAATCAGCACGAAAATGTTTTACAGTGGCGAGAAGTGGTGAGGAGAATTTTTTCGAACATTCATAACTCTGTTCAAATTCGCTCAATTGACTTGAAATTTCGCATGAGAATAGCTGTAAAATCCAAAAACATAAAAATCGGTTTTTTGAAAACTTCTCGTTTTCAGAATTTTCAGAGCAGTTTCAGATGTAACAGTGGCCCAAGAATCCAAAAAAAAAACTTTT</canonical>
            <polymorphic>TCTCCCACACTTTATTCTGGCCGCGCGCGCGGGCAGATGGCGTTAGAGAGAATAGAGTGCAGAGACGCAGAGAAAAATAGAAATAGAGGGGTCCATTGGGAAAGAAGAAGAAGAAGATGGCTTCCGAGTGGGGAAGAGCAGATGGGACAGCATTTGGGGGTATGGAAAATAGGAAAAGCCAGACGAAGAATAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGTGTTTTGGGAAGATGAAGAAGGGAAAATGACGATCAATCATTTTTCTGTTGTCTTCTGCTTATTTTGAATAAAGTCATCGAGAACATGGAAAAGAAGAAGGAAGGGGGAACATGTAGAACGTTTTGCTCTTCTTAAAAGAAAAATTTAAAAAAAATTAGATTTTGCCCTTCTTCTTGTCCTTATCGTAATATTAAAAAACTAGAAAAATACATGTTTGGGATCCTAAAAGCCACAAAAAAAGGTTCCTGAACGTTTTCTCCATTCGTTGCCTKTATATATCTTGAATCAGAAGAAGAAGAAAGGAAAAGTTTTTAGGAAGTTGTATGGTTCATGTTTTGCCTGAATAAATTCAATAAAATGGGGGCAAAGCTTCTGGGATTTTTGGATTTTTTTCGTTTGGGATAATGGATAATGGATAAATAGAATCAAGGAAAAGAAAAAAAAAAGAAAAATTCAGAACTTTTCTGGTTTTCAGGGATAAACAAAGCTTGACTTATTTTTTGTCTTCTTCAAAAAAGAAAAGAAAATCAAGAAATGACAAAAATGACAAATCAGCACGAAAATGTTTTACAGTGGCGAGAAGTGGTGAGGAGAATTTTTTCGAACATTCATAACTCTGTTCAAATTCGCTCAATTGACTTGAAATTTCGCATGAGAATAGCTGTAAAATCCAAAAACATAAAAATCGGTTTTTTGAAAACTTCTCGTTTTCAGAATTTTCAGAGCAGTTTCAGATGTAACAGTGGCCCAAGAATCCAAAAAAAAAACTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTAGAACGTTTTGCTCTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTATTGAATTTATTCAGGCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATGTAGAACGTTTTGCTCTTCTTAAAAGAAAAATTTAAAAAAAATTAGATTTTGCCCTTCTTCTTGTCCTTATCGTAATATTAAAAAACTAGAAAAATACATGTTTGGGATCCTAAAAGCCACAAAAAAAGGTTCCTGAACGTTTTCTCCATTCGTTGCCTTTATATATCTTGAATCAGAAGAAGAAGAAAGGAAAAGTTTTTAGGAAGTTGTATGGTTCATGTTTTGCCTGAATAAATTCAATAA</canonical_amplicon>
		<polymorphic_amplicon>ATGTAGAACGTTTTGCTCTTCTTAAAAGAAAAATTTAAAAAAAATTAGATTTTGCCCTTCTTCTTGTCCTTATCGTAATATTAAAAAACTAGAAAAATACATGTTTGGGATCCTAAAAGCCACAAAAAAAGGTTCCTGAACGTTTTCTCCATTCGTTGCCTKTATATATCTTGAATCAGAAGAAGAAGAAAGGAAAAGTTTTTAGGAAGTTGTATGGTTCATGTTTTGCCTGAATAAATTCAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15335</snp_id>
        <super_contig>c008701363.Contig1</super_contig>
        <contig_pos>65229</contig_pos>
        <strand>+</strand>
        <context>CATTCGTTGC[C/T]TKTATWTRTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCCTAAAAGCCACAAAAAAAGGTTCCTGAACGTTTTCTCCATTCGTTGC</left_flank>
        <right_flank>TTTATATATCTTGAATCAGAAGAAGAAGAAAGGAAAAGTTTTTAGGAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCTCCCACACTTTATTCTGGCCGCGCGCGCGGGCAGATGGCGTTAGAGAGAATAGAGTGCAGAGACGCAGAGAAAAATAGAAATAGAGGGGTCCATTGGGAAAGAAGAAGAAGAAGATGGCTTCCGAGTGGGGAAGAGCAGATGGGACAGCATTTGGGGGTATGGAAAATAGGAAAAGCCAGACGAAGAATAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGTGTTTTGGGAAGATGAAGAAGGGAAAATGACGATCAATCATTTTTCTGTTGTCTTCTGCTTATTTTGAATAAAGTCATCGAGAACATGGAAAAGAAGAAGGAAGGGGGAACATGTAGAACGTTTTGCTCTTCTTAAAAGAAAAATTTAAAAAAAATTAGATTTTGCCCTTCTTCTTGTCCTTATCGTAATATTAAAAAACTAGAAAAATACATGTTTGGGATCCTAAAAGCCACAAAAAAAGGTTCCTGAACGTTTTCTCCATTCGTTGCCTTTATATATCTTGAATCAGAAGAAGAAGAAAGGAAAAGTTTTTAGGAAGTTGTATGGTTCATGTTTTGCCTGAATAAATTCAATAAAATGGGGGCAAAGCTTCTGGGATTTTTGGATTTTTTTCGTTTGGGATAATGGATAATGGATAAATAGAATCAAGGAAAAGAAAAAAAAAAGAAAAATTCAGAACTTTTCTGGTTTTCAGGGATAAACAAAGCTTGACTTATTTTTTGTCTTCTTCAAAAAAGAAAAGAAAATCAAGAAATGACAAAAATGACAAATCAGCACGAAAATGTTTTACAGTGGCGAGAAGTGGTGAGGAGAATTTTTTCGAACATTCATAACTCTGTTCAAATTCGCTCAATTGACTTGAAATTTCGCATGAGAATAGCTGTAAAATCCAAAAACATAAAAATCGGTTTTTTGAAAACTTCTCGTTTTCAGAATTTTCAGAGCAGTTTCAGATGTAACAGTGGCCCAAGAATCCAAAAAAAAAACTT</canonical>
            <polymorphic>ACTCTCCCACACTTTATTCTGGCCGCGCGCGCGGGCAGATGGCGTTAGAGAGAATAGAGTGCAGAGACGCAGAGAAAAATAGAAATAGAGGGGTCCATTGGGAAAGAAGAAGAAGAAGATGGCTTCCGAGTGGGGAAGAGCAGATGGGACAGCATTTGGGGGTATGGAAAATAGGAAAAGCCAGACGAAGAATAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGTGTTTTGGGAAGATGAAGAAGGGAAAATGACGATCAATCATTTTTCTGTTGTCTTCTGCTTATTTTGAATAAAGTCATCGAGAACATGGAAAAGAAGAAGGAAGGGGGAACATGTAGAACGTTTTGCTCTTCTTAAAAGAAAAATTTAAAAAAAATTAGATTTTGCCCTTCTTCTTGTCCTTATCGTAATATTAAAAAACTAGAAAAATACATGTTTGGGATCCTAAAAGCCACAAAAAAAGGTTCCTGAACGTTTTCTCCATTCGTTGCYTTTATATATCTTGAATCAGAAGAAGAAGAAAGGAAAAGTTTTTAGGAAGTTGTATGGTTCATGTTTTGCCTGAATAAATTCAATAAAATGGGGGCAAAGCTTCTGGGATTTTTGGATTTTTTTCGTTTGGGATAATGGATAATGGATAAATAGAATCAAGGAAAAGAAAAAAAAAAGAAAAATTCAGAACTTTTCTGGTTTTCAGGGATAAACAAAGCTTGACTTATTTTTTGTCTTCTTCAAAAAAGAAAAGAAAATCAAGAAATGACAAAAATGACAAATCAGCACGAAAATGTTTTACAGTGGCGAGAAGTGGTGAGGAGAATTTTTTCGAACATTCATAACTCTGTTCAAATTCGCTCAATTGACTTGAAATTTCGCATGAGAATAGCTGTAAAATCCAAAAACATAAAAATCGGTTTTTTGAAAACTTCTCGTTTTCAGAATTTTCAGAGCAGTTTCAGATGTAACAGTGGCCCAAGAATCCAAAAAAAAAACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTAGAACGTTTTGCTCTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTATTGAATTTATTCAGGCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATGTAGAACGTTTTGCTCTTCTTAAAAGAAAAATTTAAAAAAAATTAGATTTTGCCCTTCTTCTTGTCCTTATCGTAATATTAAAAAACTAGAAAAATACATGTTTGGGATCCTAAAAGCCACAAAAAAAGGTTCCTGAACGTTTTCTCCATTCGTTGCCTTTATATATCTTGAATCAGAAGAAGAAGAAAGGAAAAGTTTTTAGGAAGTTGTATGGTTCATGTTTTGCCTGAATAAATTCAATAA</canonical_amplicon>
		<polymorphic_amplicon>ATGTAGAACGTTTTGCTCTTCTTAAAAGAAAAATTTAAAAAAAATTAGATTTTGCCCTTCTTCTTGTCCTTATCGTAATATTAAAAAACTAGAAAAATACATGTTTGGGATCCTAAAAGCCACAAAAAAAGGTTCCTGAACGTTTTCTCCATTCGTTGCYTTTATATATCTTGAATCAGAAGAAGAAGAAAGGAAAAGTTTTTAGGAAGTTGTATGGTTCATGTTTTGCCTGAATAAATTCAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15337</snp_id>
        <super_contig>c008701363.Contig1</super_contig>
        <contig_pos>91976</contig_pos>
        <strand>+</strand>
        <context>ACATTTAAGA[A/G]GATTAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTTCGCGGACTGAGAATAAAGCAGTTTTAGATTTGAAATACATTTAAGA</left_flank>
        <right_flank>GATTAAAAAACCCCACCGGAAAGCATCGAAATCAACAAAATCGCATGACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCTGCTGATCTGTTGGTGGTGGAAGATCGGCGTCCAACACAGCGACTTGATCCTTTTTACACGACGCATTTACAATGTTCGTGAGCTGTTGACGGAGTTTTCGCGCCTCGACGAGCGCCTTCACTCGTAGACCGACTTTTTCACATTCTCGAGCGTTATACTGCAAAAATGGATGGAATTTTTGTTAGGCACAATGTTGTGGGAAATTTCGTAATACTAGATTTTTTGCGAGTTTCTCTGTGTGTCGATTTGTCAAGCTGTCCACAATTTTAGATTGCTCACCTTAACCTGTTCAGCTACCGTAGCCGCGTGCACCAGAACTTTTAGATCGCCCAATCGACGAGCTCCTGTCTGTGAGCACCATTTTCTTCTCTCTTTTAGTACGGTCTTCATTAATTCCTTGGTTTCTTCTGGAGTCGATCCACGTAGTGATGAGACTGGGATCAACGGTTCGCGGACTGAGAATAAAGCAGTTTTAGATTTGAAATACATTTAAGAAGATTAAAAAACCCCACCGGAAAGCATCGAAATCAACAAAATCGCATGACTCATCAAATCGTGTTGATCGGCCATTGCGATGAATTTAGCATAGGACGGTGCCAATGGAAAAACTGCCAGCGTTTTTCCCAACTTCGTAATTCGAGCTACAGTACTCCCATTGGTTGTAGTATTTTCCGAGAGGGCTCCAAGACGAATTAGCCGCTTTTCAGCCGCTTCAAGCATTTGCTCATCTGGAGCAGATGGGAATGGAAAATTGACAACTTTCACGATATTCATTGTTTTCAAATGGAGCACTAGCTGATCTGCAGGCTTTGATAGAATCTCTGGATCTGCGAATTTTACAAAATCCTGATAAACAGCCGACGAGTAGAGACGATAAGCATGGCCAGCTGAGATTCTTCCAGCACGGCCCGCTCGTTGATCGGCTGATGCTTGAGAGATTCGGCAGACGGCGAATCGAGAGACTCCAGTGATAGAATCGTAGAGACGACGCTTCTC</canonical>
            <polymorphic>GCCTGCTGATCTGTTGGTGGTGGAAGATCGGCGTCCAACACAGCGACTTGATCCTTTTTACACGACGCATTTACAATGTTCGTGAGCTGTTGACGGAGTTTTCGCGCCTCGACGAGCGCCTTCACTCGTAGACCGACTTTTTCACATTCTCGAGCGTTATACTGCAAAAATGGATGGAATTTTTGTTAGGCACAATGTTGTGGGAAATTTCGTAATACTAGATTTTTTGCGAGTTTCTCTGTGTGTCGATTTGTCAAGCTGTCCACAATTTTAGATTGCTCACCTTAACCTGTTCAGCTACCGTAGCCGCGTGCACCAGAACTTTTAGATCGCCCAATCGACGAGCTCCTGTCTGTGAGCACCATTTTCTTCTCTCTTTTAGTACGGTCTTCATTAATTCCTTGGTTTCTTCTGGAGTCGATCCACGTAGTGATGAGACTGGGATCAACGGTTCGCGGACTGAGAATAAAGCAGTTTTAGATTTGAAATACATTTAAGARGATTAAAAAACCCCACCGGAAAGCATCGAAATCAACAAAATCGCATGACTCATCAAATCGTGTTGATCGGCCATTGCGATGAATTTAGCATAGGACGGTGCCAATGGAAAAACTGCCAGCGTTTTTCCCAACTTCGTAATTCGAGCTACAGTACTCCCATTGGTTGTAGTATTTTCCGAGAGGGCTCCAAGACGAATTAGCCGCTTTTCAGCCGCTTCAAGCATTTGCTCATCTGGAGCAGATGGGAATGGAAAATTGACAACTTTCACGATATTCATTGTTTTCAAATGGAGCACTAGCTGATCTGCAGGCTTTGATAGAATCTCTGGATCTGCGAATTTTACAAAATCCTGATAAACAGCCGACGAGTAGAGACGATAAGCATGGCCAGCTGAGATTCTTCCAGCACGGCCCGCTCGTTGATCGGCTGATGCTTGAGAGATTCGGCAGACGGCGAATCGAGAGACTCCAGTGATAGAATCGTAGAGACGACGCTTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCACGTAGTGATGAGACTG</pcr_primer_p1>
		<pcr_primer_p2>TACAACCAATGGGAGTACTGTAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATCCACGTAGTGATGAGACTGGGATCAACGGTTCGCGGACTGAGAATAAAGCAGTTTTAGATTTGAAATACATTTAAGAAGATTAAAAAACCCCACCGGAAAGCATCGAAATCAACAAAATCGCATGACTCATCAAATCGTGTTGATCGGCCATTGCGATGAATTTAGCATAGGACGGTGCCAATGGAAAAACTGCCAGCGTTTTTCCCAACTTCGTAATTCGAGCTACAGTACTCCCATTGGTTGTA</canonical_amplicon>
		<polymorphic_amplicon>ATCCACGTAGTGATGAGACTGGGATCAACGGTTCGCGGACTGAGAATAAAGCAGTTTTAGATTTGAAATACATTTAAGARGATTAAAAAACCCCACCGGAAAGCATCGAAATCAACAAAATCGCATGACTCATCAAATCGTGTTGATCGGCCATTGCGATGAATTTAGCATAGGACGGTGCCAATGGAAAAACTGCCAGCGTTTTTCCCAACTTCGTAATTCGAGCTACAGTACTCCCATTGGTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15338</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>58218</contig_pos>
        <strand>+</strand>
        <context>CAAGACAGCG[C/T]CTTTGTCTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGCGGTACTAGCGGGAGAGGGACCAAAGAAGGTGACTCACAAGACAGCG</left_flank>
        <right_flank>CTTTGTCTGAACAGAAATTAGATTCGTCAGCGCCTAAGAACGATTTTTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATCTTATCTCATAATAAAATTGGTTAATGAAATTGTTTCTAAATTTCGTGAACTTTTGCGCAAAATGATATTAAAAGGACCTATCATACTATCACAAATGTTGAGACACCCGAAAAATCTGCAGTAGACAAAGCAACGACTAACATTTTGAAGGTTACACCACTAGTTTTTTCGGCAACTTATAATTTGAAAAAAGTCAATTTTTGAATATATCAAAAAGAAAGCTCACTTATCTTCAAAACGTCCAGAAATTGAGTCCAGCTGCATTTTCGACAAAGTGTTTTCTATATAACTTATAAGTAGACATTTTAGAAAAAAGCAAGAGAATTTTCAGATTCTACTCACTGAAAGAATTTTGTCTGAAAACTCCCGAATGAGAACTCCGTAACCAGTTGGTGGTCAGTGAAAAATAAAATTTAAAAAAAAAATGTCTTACAAAATTTTTGGAGGCGGTACTAGCGGGAGAGGGACCAAAGAAGGTGACTCACAAGACAGCGCCTTTGTCTGAACAGAAATTAGATTCGTCAGCGCCTAAGAACGATTTTTTAAAAGAGGAAATTTTCAGAGCTTCGGGGGTCCAACGTCCGCCAATTTTCAGAAAAATACAGTGAAACAAATGAAATAAATGCAATTTTTCAGAACTTAGTTGCTTTTTGAGTCAGCAGAGCGGATTTCCAATTTAATCTGGCTGTTTATAATTAATCCTAGCTGAAAAAACCTTACCTGCAAAGCCTTCCGACAGCGTTCGTGTCGATTTATGAGGCCTAGGTGCTAAAAATCGCATTTCTGAAACCGCTGACTGTATTCAGAATAGGAGCTTTTGAAAAATGTTAAATTGAATTTACTTTAACAGTTTATTACGGTTAAATCGAAAAAGTGCCACGAAATGTACATGGTAGGGTACGTTCGAATGTCTGGAAGGGAGTTTGGGACAGTGGTAAGCATTGTTTATGAACATTTTTACAGATTTTTTTTACAGGACGAGGTTTTATGGATAC</canonical>
            <polymorphic>TTATCTTATCTCATAATAAAATTGGTTAATGAAATTGTTTCTAAATTTCGTGAACTTTTGCGCAAAATGATATTAAAAGGACCTATCATACTATCACAAATGTTGAGACACCCGAAAAATCTGCAGTAGACAAAGCAACGACTAACATTTTGAAGGTTACACCACTAGTTTTTTCGGCAACTTATAATTTGAAAAAAGTCAATTTTTGAATATATCAAAAAGAAAGCTCACTTATCTTCAAAACGTCCAGAAATTGAGTCCAGCTGCATTTTCGACAAAGTGTTTTCTATATAACTTATAAGTAGACATTTTAGAAAAAAGCAAGAGAATTTTCAGATTCTACTCACTGAAAGAATTTTGTCTGAAAACTCCCGAATGAGAACTCCGTAACCAGTTGGTGGTCAGTGAAAAATAAAATTTAAAAAAAAAATGTCTTACAAAATTTTTGGAGGCGGTACTAGCGGGAGAGGGACCAAAGAAGGTGACTCACAAGACAGCGYCTTTGTCTGAACAGAAATTAGATTCGTCAGCGCCTAAGAACGATTTTTTAAAAGAGGAAATTTTCAGAGCTTCGGGGGTCCAACGTCCGCCAATTTTCAGAAAAATACAGTGAAACAAATGAAATAAATGCAATTTTTCAGAACTTAGTTGCTTTTTGAGTCAGCAGAGCGGATTTCCAATTTAATCTGGCTGTTTATAATTAATCCTAGCTGAAAAAACCTTACCTGCAAAGCCTTCCGACAGCGTTCGTGTCGATTTATGAGGCCTAGGTGCTAAAAATCGCATTTCTGAAACCGCTGACTGTATTCAGAATAGGAGCTTTTGAAAAATGTTAAATTGAATTTACTTTAACAGTTTATTACGGTTAAATCGAAAAAGTGCCACGAAATGTACATGGTAGGGTACGTTCGAATGTCTGGAAGGGAGTTTGGGACAGTGGTAAGCATTGTTTATGAACATTTTTACAGATTTTTTTTACAGGACGAGGTTTTATGGATAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>468 437 62 33</canonical_bands>
                <polymorphic_bands>470 468 62</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>500 467 33</canonical_bands>
                <polymorphic_bands>533 467</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAAAGAATTTTGTCTGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>AAGCTCTGAAAATTTCCTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAGAATTTTGTCTGAAAACTCCCGAATGAGAACTCCGTAACCAGTTGGTGGTCAGTGAAAAATAAAATTTAAAAAAAAAATGTCTTACAAAATTTTTGGAGGCGGTACTAGCGGGAGAGGGACCAAAGAAGGTGACTCACAAGACAGCGCCTTTGTCTGAACAGAAATTAGATTCGTCAGCGCCTAAGAACGATTTTTTAAAAGAGGAAATTTTCAGAGCTT</canonical_amplicon>
		<polymorphic_amplicon>CTGAAAGAATTTTGTCTGAAAACTCCCGAATGAGAACTCCGTAACCAGTTGGTGGTCAGTGAAAAATAAAATTTAAAAAAAAAATGTCTTACAAAATTTTTGGAGGCGGTACTAGCGGGAGAGGGACCAAAGAAGGTGACTCACAAGACAGCGYCTTTGTCTGAACAGAAATTAGATTCGTCAGCGCCTAAGAACGATTTTTTAAAAGAGGAAATTTTCAGAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15339</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>58236</contig_pos>
        <strand>+</strand>
        <context>TGAACAGAAA[G/T]TAGATTCGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGGGACCAAAGAAGGTGACTCACAAGACAGCGCCTTTGTCTGAACAGAAA</left_flank>
        <right_flank>TAGATTCGTCAGCGCCTAAGAACGATTTTTTAAAAGAGGAAATTTTCAGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTGGTTAATGAAATTGTTTCTAAATTTCGTGAACTTTTGCGCAAAATGATATTAAAAGGACCTATCATACTATCACAAATGTTGAGACACCCGAAAAATCTGCAGTAGACAAAGCAACGACTAACATTTTGAAGGTTACACCACTAGTTTTTTCGGCAACTTATAATTTGAAAAAAGTCAATTTTTGAATATATCAAAAAGAAAGCTCACTTATCTTCAAAACGTCCAGAAATTGAGTCCAGCTGCATTTTCGACAAAGTGTTTTCTATATAACTTATAAGTAGACATTTTAGAAAAAAGCAAGAGAATTTTCAGATTCTACTCACTGAAAGAATTTTGTCTGAAAACTCCCGAATGAGAACTCCGTAACCAGTTGGTGGTCAGTGAAAAATAAAATTTAAAAAAAAAATGTCTTACAAAATTTTTGGAGGCGGTACTAGCGGGAGAGGGACCAAAGAAGGTGACTCACAAGACAGCGCCTTTGTCTGAACAGAAATTAGATTCGTCAGCGCCTAAGAACGATTTTTTAAAAGAGGAAATTTTCAGAGCTTCGGGGGTCCAACGTCCGCCAATTTTCAGAAAAATACAGTGAAACAAATGAAATAAATGCAATTTTTCAGAACTTAGTTGCTTTTTGAGTCAGCAGAGCGGATTTCCAATTTAATCTGGCTGTTTATAATTAATCCTAGCTGAAAAAACCTTACCTGCAAAGCCTTCCGACAGCGTTCGTGTCGATTTATGAGGCCTAGGTGCTAAAAATCGCATTTCTGAAACCGCTGACTGTATTCAGAATAGGAGCTTTTGAAAAATGTTAAATTGAATTTACTTTAACAGTTTATTACGGTTAAATCGAAAAAGTGCCACGAAATGTACATGGTAGGGTACGTTCGAATGTCTGGAAGGGAGTTTGGGACAGTGGTAAGCATTGTTTATGAACATTTTTACAGATTTTTTTTACAGGACGAGGTTTTATGGATACAGAGCTAGCATGAATACA</canonical>
            <polymorphic>AAATTGGTTAATGAAATTGTTTCTAAATTTCGTGAACTTTTGCGCAAAATGATATTAAAAGGACCTATCATACTATCACAAATGTTGAGACACCCGAAAAATCTGCAGTAGACAAAGCAACGACTAACATTTTGAAGGTTACACCACTAGTTTTTTCGGCAACTTATAATTTGAAAAAAGTCAATTTTTGAATATATCAAAAAGAAAGCTCACTTATCTTCAAAACGTCCAGAAATTGAGTCCAGCTGCATTTTCGACAAAGTGTTTTCTATATAACTTATAAGTAGACATTTTAGAAAAAAGCAAGAGAATTTTCAGATTCTACTCACTGAAAGAATTTTGTCTGAAAACTCCCGAATGAGAACTCCGTAACCAGTTGGTGGTCAGTGAAAAATAAAATTTAAAAAAAAAATGTCTTACAAAATTTTTGGAGGCGGTACTAGCGGGAGAGGGACCAAAGAAGGTGACTCACAAGACAGCGCCTTTGTCTGAACAGAAAKTAGATTCGTCAGCGCCTAAGAACGATTTTTTAAAAGAGGAAATTTTCAGAGCTTCGGGGGTCCAACGTCCGCCAATTTTCAGAAAAATACAGTGAAACAAATGAAATAAATGCAATTTTTCAGAACTTAGTTGCTTTTTGAGTCAGCAGAGCGGATTTCCAATTTAATCTGGCTGTTTATAATTAATCCTAGCTGAAAAAACCTTACCTGCAAAGCCTTCCGACAGCGTTCGTGTCGATTTATGAGGCCTAGGTGCTAAAAATCGCATTTCTGAAACCGCTGACTGTATTCAGAATAGGAGCTTTTGAAAAATGTTAAATTGAATTTACTTTAACAGTTTATTACGGTTAAATCGAAAAAGTGCCACGAAATGTACATGGTAGGGTACGTTCGAATGTCTGGAAGGGAGTTTGGGACAGTGGTAAGCATTGTTTATGAACATTTTTACAGATTTTTTTTACAGGACGAGGTTTTATGGATACAGAGCTAGCATGAATACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>178 142 137 76 75 62 51 47 43 40 33 26 25 20 15 13 11 5 1</canonical_bands>
                <polymorphic_bands>178 142 137 118 76 62 51 47 40 33 26 25 20 15 13 11 5 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAAAGAATTTTGTCTGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>AAGCTCTGAAAATTTCCTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAGAATTTTGTCTGAAAACTCCCGAATGAGAACTCCGTAACCAGTTGGTGGTCAGTGAAAAATAAAATTTAAAAAAAAAATGTCTTACAAAATTTTTGGAGGCGGTACTAGCGGGAGAGGGACCAAAGAAGGTGACTCACAAGACAGCGCCTTTGTCTGAACAGAAATTAGATTCGTCAGCGCCTAAGAACGATTTTTTAAAAGAGGAAATTTTCAGAGCTT</canonical_amplicon>
		<polymorphic_amplicon>CTGAAAGAATTTTGTCTGAAAACTCCCGAATGAGAACTCCGTAACCAGTTGGTGGTCAGTGAAAAATAAAATTTAAAAAAAAAATGTCTTACAAAATTTTTGGAGGCGGTACTAGCGGGAGAGGGACCAAAGAAGGTGACTCACAAGACAGCGCCTTTGTCTGAACAGAAAKTAGATTCGTCAGCGCCTAAGAACGATTTTTTAAAAGAGGAAATTTTCAGAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15340</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>58268</contig_pos>
        <strand>+</strand>
        <context>ACGATTTTTT[A/T]AAAGAGGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCTTTGTCTGAACAGAAATTAGATTCGTCAGCGCCTAAGAACGATTTTTT</left_flank>
        <right_flank>AAAGAGGAAATTTTCAGAGCTTCGGGGGTCCAACGTCCGCCAATTTTCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAACTTTTGCGCAAAATGATATTAAAAGGACCTATCATACTATCACAAATGTTGAGACACCCGAAAAATCTGCAGTAGACAAAGCAACGACTAACATTTTGAAGGTTACACCACTAGTTTTTTCGGCAACTTATAATTTGAAAAAAGTCAATTTTTGAATATATCAAAAAGAAAGCTCACTTATCTTCAAAACGTCCAGAAATTGAGTCCAGCTGCATTTTCGACAAAGTGTTTTCTATATAACTTATAAGTAGACATTTTAGAAAAAAGCAAGAGAATTTTCAGATTCTACTCACTGAAAGAATTTTGTCTGAAAACTCCCGAATGAGAACTCCGTAACCAGTTGGTGGTCAGTGAAAAATAAAATTTAAAAAAAAAATGTCTTACAAAATTTTTGGAGGCGGTACTAGCGGGAGAGGGACCAAAGAAGGTGACTCACAAGACAGCGCCTTTGTCTGAACAGAAATTAGATTCGTCAGCGCCTAAGAACGATTTTTTAAAAGAGGAAATTTTCAGAGCTTCGGGGGTCCAACGTCCGCCAATTTTCAGAAAAATACAGTGAAACAAATGAAATAAATGCAATTTTTCAGAACTTAGTTGCTTTTTGAGTCAGCAGAGCGGATTTCCAATTTAATCTGGCTGTTTATAATTAATCCTAGCTGAAAAAACCTTACCTGCAAAGCCTTCCGACAGCGTTCGTGTCGATTTATGAGGCCTAGGTGCTAAAAATCGCATTTCTGAAACCGCTGACTGTATTCAGAATAGGAGCTTTTGAAAAATGTTAAATTGAATTTACTTTAACAGTTTATTACGGTTAAATCGAAAAAGTGCCACGAAATGTACATGGTAGGGTACGTTCGAATGTCTGGAAGGGAGTTTGGGACAGTGGTAAGCATTGTTTATGAACATTTTTACAGATTTTTTTTACAGGACGAGGTTTTATGGATACAGAGCTAGCATGAATACATGAATACAGAGCTAGGATGATGTAGGAGCAGA</canonical>
            <polymorphic>TGAACTTTTGCGCAAAATGATATTAAAAGGACCTATCATACTATCACAAATGTTGAGACACCCGAAAAATCTGCAGTAGACAAAGCAACGACTAACATTTTGAAGGTTACACCACTAGTTTTTTCGGCAACTTATAATTTGAAAAAAGTCAATTTTTGAATATATCAAAAAGAAAGCTCACTTATCTTCAAAACGTCCAGAAATTGAGTCCAGCTGCATTTTCGACAAAGTGTTTTCTATATAACTTATAAGTAGACATTTTAGAAAAAAGCAAGAGAATTTTCAGATTCTACTCACTGAAAGAATTTTGTCTGAAAACTCCCGAATGAGAACTCCGTAACCAGTTGGTGGTCAGTGAAAAATAAAATTTAAAAAAAAAATGTCTTACAAAATTTTTGGAGGCGGTACTAGCGGGAGAGGGACCAAAGAAGGTGACTCACAAGACAGCGCCTTTGTCTGAACAGAAATTAGATTCGTCAGCGCCTAAGAACGATTTTTTWAAAGAGGAAATTTTCAGAGCTTCGGGGGTCCAACGTCCGCCAATTTTCAGAAAAATACAGTGAAACAAATGAAATAAATGCAATTTTTCAGAACTTAGTTGCTTTTTGAGTCAGCAGAGCGGATTTCCAATTTAATCTGGCTGTTTATAATTAATCCTAGCTGAAAAAACCTTACCTGCAAAGCCTTCCGACAGCGTTCGTGTCGATTTATGAGGCCTAGGTGCTAAAAATCGCATTTCTGAAACCGCTGACTGTATTCAGAATAGGAGCTTTTGAAAAATGTTAAATTGAATTTACTTTAACAGTTTATTACGGTTAAATCGAAAAAGTGCCACGAAATGTACATGGTAGGGTACGTTCGAATGTCTGGAAGGGAGTTTGGGACAGTGGTAAGCATTGTTTATGAACATTTTTACAGATTTTTTTTACAGGACGAGGTTTTATGGATACAGAGCTAGCATGAATACATGAATACAGAGCTAGGATGATGTAGGAGCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 370 129</canonical_bands>
                <polymorphic_bands>630 370</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>346 184 134 132 129 23 19 17 16</canonical_bands>
                <polymorphic_bands>346 263 184 132 23 19 17 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAGAAGGTGACTCACAAGA</pcr_primer_p1>
		<pcr_primer_p2>GGATTAATTATAAACAGCCAGATT</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>CAAAGAAGGTGACTCACAAGACAGCGCCTTTGTCTGAACAGAAATTAGATTCGTCAGCGCCTAAGAACGATTTTTTAAAAGAGGAAATTTTCAGAGCTTCGGGGGTCCAACGTCCGCCAATTTTCAGAAAAATACAGTGAAACAAATGAAATAAATGCAATTTTTCAGAACTTAGTTGCTTTTTGAGTCAGCAGAGCGGATTTCCAATTTAATCTGGCTGTTTATAATTAATCC</canonical_amplicon>
		<polymorphic_amplicon>CAAAGAAGGTGACTCACAAGACAGCGCCTTTGTCTGAACAGAAATTAGATTCGTCAGCGCCTAAGAACGATTTTTTWAAAGAGGAAATTTTCAGAGCTTCGGGGGTCCAACGTCCGCCAATTTTCAGAAAAATACAGTGAAACAAATGAAATAAATGCAATTTTTCAGAACTTAGTTGCTTTTTGAGTCAGCAGAGCGGATTTCCAATTTAATCTGGCTGTTTATAATTAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15341</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>58330</contig_pos>
        <strand>+</strand>
        <context>AAAATACAGT[A/G]AAACAAATGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCAGAGCTTCGGGGGTCCAACGTCCGCCAATTTTCAGAAAAATACAGT</left_flank>
        <right_flank>AAACAAATGAAATAAATGCAATTTTTCAGAACTTAGTTGCTTTTTGAGTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAAAAATCTGCAGTAGACAAAGCAACGACTAACATTTTGAAGGTTACACCACTAGTTTTTTCGGCAACTTATAATTTGAAAAAAGTCAATTTTTGAATATATCAAAAAGAAAGCTCACTTATCTTCAAAACGTCCAGAAATTGAGTCCAGCTGCATTTTCGACAAAGTGTTTTCTATATAACTTATAAGTAGACATTTTAGAAAAAAGCAAGAGAATTTTCAGATTCTACTCACTGAAAGAATTTTGTCTGAAAACTCCCGAATGAGAACTCCGTAACCAGTTGGTGGTCAGTGAAAAATAAAATTTAAAAAAAAAATGTCTTACAAAATTTTTGGAGGCGGTACTAGCGGGAGAGGGACCAAAGAAGGTGACTCACAAGACAGCGCCTTTGTCTGAACAGAAATTAGATTCGTCAGCGCCTAAGAACGATTTTTTAAAAGAGGAAATTTTCAGAGCTTCGGGGGTCCAACGTCCGCCAATTTTCAGAAAAATACAGTGAAACAAATGAAATAAATGCAATTTTTCAGAACTTAGTTGCTTTTTGAGTCAGCAGAGCGGATTTCCAATTTAATCTGGCTGTTTATAATTAATCCTAGCTGAAAAAACCTTACCTGCAAAGCCTTCCGACAGCGTTCGTGTCGATTTATGAGGCCTAGGTGCTAAAAATCGCATTTCTGAAACCGCTGACTGTATTCAGAATAGGAGCTTTTGAAAAATGTTAAATTGAATTTACTTTAACAGTTTATTACGGTTAAATCGAAAAAGTGCCACGAAATGTACATGGTAGGGTACGTTCGAATGTCTGGAAGGGAGTTTGGGACAGTGGTAAGCATTGTTTATGAACATTTTTACAGATTTTTTTTACAGGACGAGGTTTTATGGATACAGAGCTAGCATGAATACATGAATACAGAGCTAGGATGATGTAGGAGCAGACGTAAAAAAAGCAAAACCAAAACTTAATGATTGAGAACTTATGTATGCTGGGTTGGATTTTG</canonical>
            <polymorphic>CGAAAAATCTGCAGTAGACAAAGCAACGACTAACATTTTGAAGGTTACACCACTAGTTTTTTCGGCAACTTATAATTTGAAAAAAGTCAATTTTTGAATATATCAAAAAGAAAGCTCACTTATCTTCAAAACGTCCAGAAATTGAGTCCAGCTGCATTTTCGACAAAGTGTTTTCTATATAACTTATAAGTAGACATTTTAGAAAAAAGCAAGAGAATTTTCAGATTCTACTCACTGAAAGAATTTTGTCTGAAAACTCCCGAATGAGAACTCCGTAACCAGTTGGTGGTCAGTGAAAAATAAAATTTAAAAAAAAAATGTCTTACAAAATTTTTGGAGGCGGTACTAGCGGGAGAGGGACCAAAGAAGGTGACTCACAAGACAGCGCCTTTGTCTGAACAGAAATTAGATTCGTCAGCGCCTAAGAACGATTTTTTAAAAGAGGAAATTTTCAGAGCTTCGGGGGTCCAACGTCCGCCAATTTTCAGAAAAATACAGTRAAACAAATGAAATAAATGCAATTTTTCAGAACTTAGTTGCTTTTTGAGTCAGCAGAGCGGATTTCCAATTTAATCTGGCTGTTTATAATTAATCCTAGCTGAAAAAACCTTACCTGCAAAGCCTTCCGACAGCGTTCGTGTCGATTTATGAGGCCTAGGTGCTAAAAATCGCATTTCTGAAACCGCTGACTGTATTCAGAATAGGAGCTTTTGAAAAATGTTAAATTGAATTTACTTTAACAGTTTATTACGGTTAAATCGAAAAAGTGCCACGAAATGTACATGGTAGGGTACGTTCGAATGTCTGGAAGGGAGTTTGGGACAGTGGTAAGCATTGTTTATGAACATTTTTACAGATTTTTTTTACAGGACGAGGTTTTATGGATACAGAGCTAGCATGAATACATGAATACAGAGCTAGGATGATGTAGGAGCAGACGTAAAAAAAGCAAAACCAAAACTTAATGATTGAGAACTTATGTATGCTGGGTTGGATTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>173 140 123 108 77 66 64 55 54 52 49 21 7 5 3 3</canonical_bands>
                <polymorphic_bands>263 173 108 77 66 64 55 54 52 49 21 7 5 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAGAAGGTGACTCACAAGA</pcr_primer_p1>
		<pcr_primer_p2>GGATTAATTATAAACAGCCAGATT</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>CAAAGAAGGTGACTCACAAGACAGCGCCTTTGTCTGAACAGAAATTAGATTCGTCAGCGCCTAAGAACGATTTTTTAAAAGAGGAAATTTTCAGAGCTTCGGGGGTCCAACGTCCGCCAATTTTCAGAAAAATACAGTGAAACAAATGAAATAAATGCAATTTTTCAGAACTTAGTTGCTTTTTGAGTCAGCAGAGCGGATTTCCAATTTAATCTGGCTGTTTATAATTAATCC</canonical_amplicon>
		<polymorphic_amplicon>CAAAGAAGGTGACTCACAAGACAGCGCCTTTGTCTGAACAGAAATTAGATTCGTCAGCGCCTAAGAACGATTTTTTAAAAGAGGAAATTTTCAGAGCTTCGGGGGTCCAACGTCCGCCAATTTTCAGAAAAATACAGTRAAACAAATGAAATAAATGCAATTTTTCAGAACTTAGTTGCTTTTTGAGTCAGCAGAGCGGATTTCCAATTTAATCTGGCTGTTTATAATTAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15342</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>58441</contig_pos>
        <strand>+</strand>
        <context>GAAAAAACCT[C/T]ACCTGCAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTCCAATTTAATCTGGCTGTTTATAATTAATCCTAGCTGAAAAAACCT</left_flank>
        <right_flank>ACCTGCAAAGCCTTCCGACAGCGTTCGTGTCGATTTATGAGGCCTAGGTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCTCACTTATCTTCAAAACGTCCAGAAATTGAGTCCAGCTGCATTTTCGACAAAGTGTTTTCTATATAACTTATAAGTAGACATTTTAGAAAAAAGCAAGAGAATTTTCAGATTCTACTCACTGAAAGAATTTTGTCTGAAAACTCCCGAATGAGAACTCCGTAACCAGTTGGTGGTCAGTGAAAAATAAAATTTAAAAAAAAAATGTCTTACAAAATTTTTGGAGGCGGTACTAGCGGGAGAGGGACCAAAGAAGGTGACTCACAAGACAGCGCCTTTGTCTGAACAGAAATTAGATTCGTCAGCGCCTAAGAACGATTTTTTAAAAGAGGAAATTTTCAGAGCTTCGGGGGTCCAACGTCCGCCAATTTTCAGAAAAATACAGTGAAACAAATGAAATAAATGCAATTTTTCAGAACTTAGTTGCTTTTTGAGTCAGCAGAGCGGATTTCCAATTTAATCTGGCTGTTTATAATTAATCCTAGCTGAAAAAACCTTACCTGCAAAGCCTTCCGACAGCGTTCGTGTCGATTTATGAGGCCTAGGTGCTAAAAATCGCATTTCTGAAACCGCTGACTGTATTCAGAATAGGAGCTTTTGAAAAATGTTAAATTGAATTTACTTTAACAGTTTATTACGGTTAAATCGAAAAAGTGCCACGAAATGTACATGGTAGGGTACGTTCGAATGTCTGGAAGGGAGTTTGGGACAGTGGTAAGCATTGTTTATGAACATTTTTACAGATTTTTTTTACAGGACGAGGTTTTATGGATACAGAGCTAGCATGAATACATGAATACAGAGCTAGGATGATGTAGGAGCAGACGTAAAAAAAGCAAAACCAAAACTTAATGATTGAGAACTTATGTATGCTGGGTTGGATTTTGAACGCCTCTCTCGAATTGGATAGCTGGTCTCTCGGAGTTGCGAATCTTCTCCTCGGTTTGTTCTCTCTTAATCAAGAGCTTCTTTGCCAGACGCCTTCTGATATTCTCGTT</canonical>
            <polymorphic>AAGCTCACTTATCTTCAAAACGTCCAGAAATTGAGTCCAGCTGCATTTTCGACAAAGTGTTTTCTATATAACTTATAAGTAGACATTTTAGAAAAAAGCAAGAGAATTTTCAGATTCTACTCACTGAAAGAATTTTGTCTGAAAACTCCCGAATGAGAACTCCGTAACCAGTTGGTGGTCAGTGAAAAATAAAATTTAAAAAAAAAATGTCTTACAAAATTTTTGGAGGCGGTACTAGCGGGAGAGGGACCAAAGAAGGTGACTCACAAGACAGCGCCTTTGTCTGAACAGAAATTAGATTCGTCAGCGCCTAAGAACGATTTTTTAAAAGAGGAAATTTTCAGAGCTTCGGGGGTCCAACGTCCGCCAATTTTCAGAAAAATACAGTGAAACAAATGAAATAAATGCAATTTTTCAGAACTTAGTTGCTTTTTGAGTCAGCAGAGCGGATTTCCAATTTAATCTGGCTGTTTATAATTAATCCTAGCTGAAAAAACCTYACCTGCAAAGCCTTCCGACAGCGTTCGTGTCGATTTATGAGGCCTAGGTGCTAAAAATCGCATTTCTGAAACCGCTGACTGTATTCAGAATAGGAGCTTTTGAAAAATGTTAAATTGAATTTACTTTAACAGTTTATTACGGTTAAATCGAAAAAGTGCCACGAAATGTACATGGTAGGGTACGTTCGAATGTCTGGAAGGGAGTTTGGGACAGTGGTAAGCATTGTTTATGAACATTTTTACAGATTTTTTTTACAGGACGAGGTTTTATGGATACAGAGCTAGCATGAATACATGAATACAGAGCTAGGATGATGTAGGAGCAGACGTAAAAAAAGCAAAACCAAAACTTAATGATTGAGAACTTATGTATGCTGGGTTGGATTTTGAACGCCTCTCTCGAATTGGATAGCTGGTCTCTCGGAGTTGCGAATCTTCTCCTCGGTTTGTTCTCTCTTAATCAAGAGCTTCTTTGCCAGACGCCTTCTGATATTCTCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTTAGTTGCTTTTTGAGTCAG</pcr_primer_p1>
		<pcr_primer_p2>GTACATTTCGTGGCACTTTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AACTTAGTTGCTTTTTGAGTCAGCAGAGCGGATTTCCAATTTAATCTGGCTGTTTATAATTAATCCTAGCTGAAAAAACCTTACCTGCAAAGCCTTCCGACAGCGTTCGTGTCGATTTATGAGGCCTAGGTGCTAAAAATCGCATTTCTGAAACCGCTGACTGTATTCAGAATAGGAGCTTTTGAAAAATGTTAAATTGAATTTACTTTAACAGTTTATTACGGTTAAATCGAAAAAGTGCCACGAAATGTAC</canonical_amplicon>
		<polymorphic_amplicon>AACTTAGTTGCTTTTTGAGTCAGCAGAGCGGATTTCCAATTTAATCTGGCTGTTTATAATTAATCCTAGCTGAAAAAACCTYACCTGCAAAGCCTTCCGACAGCGTTCGTGTCGATTTATGAGGCCTAGGTGCTAAAAATCGCATTTCTGAAACCGCTGACTGTATTCAGAATAGGAGCTTTTGAAAAATGTTAAATTGAATTTACTTTAACAGTTTATTACGGTTAAATCGAAAAAGTGCCACGAAATGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15343</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>58590</contig_pos>
        <strand>+</strand>
        <context>ACGGTTAAAT[C/T]GAAAAAGTGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGAAAAATGTTAAATTGAATTTACTTTAACAGTTTATTACGGTTAAAT</left_flank>
        <right_flank>GAAAAAGTGCCACGAAATGTACATGGTAGGGTACGTTCGAATGTCTGGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAATGAGAACTCCGTAACCAGTTGGTGGTCAGTGAAAAATAAAATTTAAAAAAAAAATGTCTTACAAAATTTTTGGAGGCGGTACTAGCGGGAGAGGGACCAAAGAAGGTGACTCACAAGACAGCGCCTTTGTCTGAACAGAAATTAGATTCGTCAGCGCCTAAGAACGATTTTTTAAAAGAGGAAATTTTCAGAGCTTCGGGGGTCCAACGTCCGCCAATTTTCAGAAAAATACAGTGAAACAAATGAAATAAATGCAATTTTTCAGAACTTAGTTGCTTTTTGAGTCAGCAGAGCGGATTTCCAATTTAATCTGGCTGTTTATAATTAATCCTAGCTGAAAAAACCTTACCTGCAAAGCCTTCCGACAGCGTTCGTGTCGATTTATGAGGCCTAGGTGCTAAAAATCGCATTTCTGAAACCGCTGACTGTATTCAGAATAGGAGCTTTTGAAAAATGTTAAATTGAATTTACTTTAACAGTTTATTACGGTTAAATCGAAAAAGTGCCACGAAATGTACATGGTAGGGTACGTTCGAATGTCTGGAAGGGAGTTTGGGACAGTGGTAAGCATTGTTTATGAACATTTTTACAGATTTTTTTTACAGGACGAGGTTTTATGGATACAGAGCTAGCATGAATACATGAATACAGAGCTAGGATGATGTAGGAGCAGACGTAAAAAAAGCAAAACCAAAACTTAATGATTGAGAACTTATGTATGCTGGGTTGGATTTTGAACGCCTCTCTCGAATTGGATAGCTGGTCTCTCGGAGTTGCGAATCTTCTCCTCGGTTTGTTCTCTCTTAATCAAGAGCTTCTTTGCCAGACGCCTTCTGATATTCTCGTTCTCAGTCTCAACGTGTTCGATTTCTCTTCTCTGCATTTTGCGAGCATCCCGACCTTGCTTGTTGAGGATGTGGATGCTTTCGAACTTGTTCATCCCCATTCGCTCATGAGCAGCTTTCATTTCGCGTGTGATGCGAGCTTGGACTTGAT</canonical>
            <polymorphic>CGAATGAGAACTCCGTAACCAGTTGGTGGTCAGTGAAAAATAAAATTTAAAAAAAAAATGTCTTACAAAATTTTTGGAGGCGGTACTAGCGGGAGAGGGACCAAAGAAGGTGACTCACAAGACAGCGCCTTTGTCTGAACAGAAATTAGATTCGTCAGCGCCTAAGAACGATTTTTTAAAAGAGGAAATTTTCAGAGCTTCGGGGGTCCAACGTCCGCCAATTTTCAGAAAAATACAGTGAAACAAATGAAATAAATGCAATTTTTCAGAACTTAGTTGCTTTTTGAGTCAGCAGAGCGGATTTCCAATTTAATCTGGCTGTTTATAATTAATCCTAGCTGAAAAAACCTTACCTGCAAAGCCTTCCGACAGCGTTCGTGTCGATTTATGAGGCCTAGGTGCTAAAAATCGCATTTCTGAAACCGCTGACTGTATTCAGAATAGGAGCTTTTGAAAAATGTTAAATTGAATTTACTTTAACAGTTTATTACGGTTAAATYGAAAAAGTGCCACGAAATGTACATGGTAGGGTACGTTCGAATGTCTGGAAGGGAGTTTGGGACAGTGGTAAGCATTGTTTATGAACATTTTTACAGATTTTTTTTACAGGACGAGGTTTTATGGATACAGAGCTAGCATGAATACATGAATACAGAGCTAGGATGATGTAGGAGCAGACGTAAAAAAAGCAAAACCAAAACTTAATGATTGAGAACTTATGTATGCTGGGTTGGATTTTGAACGCCTCTCTCGAATTGGATAGCTGGTCTCTCGGAGTTGCGAATCTTCTCCTCGGTTTGTTCTCTCTTAATCAAGAGCTTCTTTGCCAGACGCCTTCTGATATTCTCGTTCTCAGTCTCAACGTGTTCGATTTCTCTTCTCTGCATTTTGCGAGCATCCCGACCTTGCTTGTTGAGGATGTGGATGCTTTCGAACTTGTTCATCCCCATTCGCTCATGAGCAGCTTTCATTTCGCGTGTGATGCGAGCTTGGACTTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>382 214 118 117 68 63 38</canonical_bands>
                <polymorphic_bands>382 214 156 117 68 63</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGCCTAGGTGCTAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATGCTAGCTCTGTATCCATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGGCCTAGGTGCTAAAAATCGCATTTCTGAAACCGCTGACTGTATTCAGAATAGGAGCTTTTGAAAAATGTTAAATTGAATTTACTTTAACAGTTTATTACGGTTAAATCGAAAAAGTGCCACGAAATGTACATGGTAGGGTACGTTCGAATGTCTGGAAGGGAGTTTGGGACAGTGGTAAGCATTGTTTATGAACATTTTTACAGATTTTTTTTACAGGACGAGGTTTTATGGATACAGAGCTAGCAT</canonical_amplicon>
		<polymorphic_amplicon>GAGGCCTAGGTGCTAAAAATCGCATTTCTGAAACCGCTGACTGTATTCAGAATAGGAGCTTTTGAAAAATGTTAAATTGAATTTACTTTAACAGTTTATTACGGTTAAATYGAAAAAGTGCCACGAAATGTACATGGTAGGGTACGTTCGAATGTCTGGAAGGGAGTTTGGGACAGTGGTAAGCATTGTTTATGAACATTTTTACAGATTTTTTTTACAGGACGAGGTTTTATGGATACAGAGCTAGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15344</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>58668</contig_pos>
        <strand>+</strand>
        <context>GTAAGCATTG[C/T]TTATGAACAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGGTACGTTCGAATGTCTGGAAGGGAGTTTGGGACAGTGGTAAGCATTG</left_flank>
        <right_flank>TTATGAACATTTTTACAGATTTTTTTTACAGGACGAGGTTTTATGGATAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCGGTACTAGCGGGAGAGGGACCAAAGAAGGTGACTCACAAGACAGCGCCTTTGTCTGAACAGAAATTAGATTCGTCAGCGCCTAAGAACGATTTTTTAAAAGAGGAAATTTTCAGAGCTTCGGGGGTCCAACGTCCGCCAATTTTCAGAAAAATACAGTGAAACAAATGAAATAAATGCAATTTTTCAGAACTTAGTTGCTTTTTGAGTCAGCAGAGCGGATTTCCAATTTAATCTGGCTGTTTATAATTAATCCTAGCTGAAAAAACCTTACCTGCAAAGCCTTCCGACAGCGTTCGTGTCGATTTATGAGGCCTAGGTGCTAAAAATCGCATTTCTGAAACCGCTGACTGTATTCAGAATAGGAGCTTTTGAAAAATGTTAAATTGAATTTACTTTAACAGTTTATTACGGTTAAATCGAAAAAGTGCCACGAAATGTACATGGTAGGGTACGTTCGAATGTCTGGAAGGGAGTTTGGGACAGTGGTAAGCATTGTTTATGAACATTTTTACAGATTTTTTTTACAGGACGAGGTTTTATGGATACAGAGCTAGCATGAATACATGAATACAGAGCTAGGATGATGTAGGAGCAGACGTAAAAAAAGCAAAACCAAAACTTAATGATTGAGAACTTATGTATGCTGGGTTGGATTTTGAACGCCTCTCTCGAATTGGATAGCTGGTCTCTCGGAGTTGCGAATCTTCTCCTCGGTTTGTTCTCTCTTAATCAAGAGCTTCTTTGCCAGACGCCTTCTGATATTCTCGTTCTCAGTCTCAACGTGTTCGATTTCTCTTCTCTGCATTTTGCGAGCATCCCGACCTTGCTTGTTGAGGATGTGGATGCTTTCGAACTTGTTCATCCCCATTCGCTCATGAGCAGCTTTCATTTCGCGTGTGATGCGAGCTTGGACTTGATTGAGAGCTTGCTTCTTGTTTTGTAGACGGGTGTTGAGGAAGCGTTCCAAGTGACGATCGATTTTGCGCTCCTCCTTGT</canonical>
            <polymorphic>GGCGGTACTAGCGGGAGAGGGACCAAAGAAGGTGACTCACAAGACAGCGCCTTTGTCTGAACAGAAATTAGATTCGTCAGCGCCTAAGAACGATTTTTTAAAAGAGGAAATTTTCAGAGCTTCGGGGGTCCAACGTCCGCCAATTTTCAGAAAAATACAGTGAAACAAATGAAATAAATGCAATTTTTCAGAACTTAGTTGCTTTTTGAGTCAGCAGAGCGGATTTCCAATTTAATCTGGCTGTTTATAATTAATCCTAGCTGAAAAAACCTTACCTGCAAAGCCTTCCGACAGCGTTCGTGTCGATTTATGAGGCCTAGGTGCTAAAAATCGCATTTCTGAAACCGCTGACTGTATTCAGAATAGGAGCTTTTGAAAAATGTTAAATTGAATTTACTTTAACAGTTTATTACGGTTAAATCGAAAAAGTGCCACGAAATGTACATGGTAGGGTACGTTCGAATGTCTGGAAGGGAGTTTGGGACAGTGGTAAGCATTGYTTATGAACATTTTTACAGATTTTTTTTACAGGACGAGGTTTTATGGATACAGAGCTAGCATGAATACATGAATACAGAGCTAGGATGATGTAGGAGCAGACGTAAAAAAAGCAAAACCAAAACTTAATGATTGAGAACTTATGTATGCTGGGTTGGATTTTGAACGCCTCTCTCGAATTGGATAGCTGGTCTCTCGGAGTTGCGAATCTTCTCCTCGGTTTGTTCTCTCTTAATCAAGAGCTTCTTTGCCAGACGCCTTCTGATATTCTCGTTCTCAGTCTCAACGTGTTCGATTTCTCTTCTCTGCATTTTGCGAGCATCCCGACCTTGCTTGTTGAGGATGTGGATGCTTTCGAACTTGTTCATCCCCATTCGCTCATGAGCAGCTTTCATTTCGCGTGTGATGCGAGCTTGGACTTGATTGAGAGCTTGCTTCTTGTTTTGTAGACGGGTGTTGAGGAAGCGTTCCAAGTGACGATCGATTTTGCGCTCCTCCTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGCCTAGGTGCTAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATGCTAGCTCTGTATCCATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGGCCTAGGTGCTAAAAATCGCATTTCTGAAACCGCTGACTGTATTCAGAATAGGAGCTTTTGAAAAATGTTAAATTGAATTTACTTTAACAGTTTATTACGGTTAAATCGAAAAAGTGCCACGAAATGTACATGGTAGGGTACGTTCGAATGTCTGGAAGGGAGTTTGGGACAGTGGTAAGCATTGTTTATGAACATTTTTACAGATTTTTTTTACAGGACGAGGTTTTATGGATACAGAGCTAGCAT</canonical_amplicon>
		<polymorphic_amplicon>GAGGCCTAGGTGCTAAAAATCGCATTTCTGAAACCGCTGACTGTATTCAGAATAGGAGCTTTTGAAAAATGTTAAATTGAATTTACTTTAACAGTTTATTACGGTTAAATCGAAAAAGTGCCACGAAATGTACATGGTAGGGTACGTTCGAATGTCTGGAAGGGAGTTTGGGACAGTGGTAAGCATTGYTTATGAACATTTTTACAGATTTTTTTTACAGGACGAGGTTTTATGGATACAGAGCTAGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15345</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>60916</contig_pos>
        <strand>+</strand>
        <context>GCCGATCGCG[A/G]AGTTTTCATG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTAGCGGTTTTGAGGCGGGCCTCGTGAATCGACACGAGCGCCGATCGCG</left_flank>
        <right_flank>AGTTTTCATGTGCGAGTTATTTTTTCGATTTGAAATTTGGTTCCAACATT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTGAGGCGGGCCTCGTGAATCGACACGAGCGCCGATCGCGGAGTTTTCATGTGCGAGTTATTTTTTCGATTTGAAATTTGGTTCCAACATTTTTTCATCTGAAACTTCTGAATTTATCTGAAAATGAAAATCTGAAAATTTGGAAATTCAAGTTATTTTCGAATAGTTATTTGACTTTATTCTTACCGGATAGAAATAAAACAAATGACAATACAAAGTCTGAATGACCGAAACCATTTGAATGTACGAATCTACAGTAGGGTTATCTATAAGCACTTTTGAACACTAATTTTAACTTTGTTTTGAATTTTTGAAATAATTGTCTCATCGGATTGTAACTGGGAAAGTGCAAAAAAGAATAAGGTGTCTATGAGGGTAAGAAAATGATCAACATTCGCTTTTTGTAAGGCAAGTAATCTAATCAAAGGTACAAATTGAAACATTCTGTTTGTTGAATAAGCAAAAGAACTAATTTGATGGGTGAATAGAGAGGAAAAGATGCTAATAAAATTGAAAGTATACATTTTATATGAACATTCAC</canonical>
            <polymorphic>GAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTGAGGCGGGCCTCGTGAATCGACACGAGCGCCGATCGCGRAGTTTTCATGTGCGAGTTATTTTTTCGATTTGAAATTTGGTTCCAACATTTTTTCATCTGAAACTTCTGAATTTATCTGAAAATGAAAATCTGAAAATTTGGAAATTCAAGTTATTTTCGAATAGTTATTTGACTTTATTCTTACCGGATAGAAATAAAACAAATGACAATACAAAGTCTGAATGACCGAAACCATTTGAATGTACGAATCTACAGTAGGGTTATCTATAAGCACTTTTGAACACTAATTTTAACTTTGTTTTGAATTTTTGAAATAATTGTCTCATCGGATTGTAACTGGGAAAGTGCAAAAAAGAATAAGGTGTCTATGAGGGTAAGAAAATGATCAACATTCGCTTTTTGTAAGGCAAGTAATCTAATCAAAGGTACAAATTGAAACATTCTGTTTGTTGAATAAGCAAAAGAACTAATTTGATGGGTGAATAGAGAGGAAAAGATGCTAATAAAATTGAAAGTATACATTTTATATGAACATTCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTTAACTGTAGCGGTTTTG</pcr_primer_p1>
		<pcr_primer_p2>GGTCATTCAGACTTTGTATTGTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTTTTAACTGTAGCGGTTTTGAGGCGGGCCTCGTGAATCGACACGAGCGCCGATCGCGGAGTTTTCATGTGCGAGTTATTTTTTCGATTTGAAATTTGGTTCCAACATTTTTTCATCTGAAACTTCTGAATTTATCTGAAAATGAAAATCTGAAAATTTGGAAATTCAAGTTATTTTCGAATAGTTATTTGACTTTATTCTTACCGGATAGAAATAAAACAAATGACAATACAAAGTCTGAATGACC</canonical_amplicon>
		<polymorphic_amplicon>GTTTTTAACTGTAGCGGTTTTGAGGCGGGCCTCGTGAATCGACACGAGCGCCGATCGCGRAGTTTTCATGTGCGAGTTATTTTTTCGATTTGAAATTTGGTTCCAACATTTTTTCATCTGAAACTTCTGAATTTATCTGAAAATGAAAATCTGAAAATTTGGAAATTCAAGTTATTTTCGAATAGTTATTTGACTTTATTCTTACCGGATAGAAATAAAACAAATGACAATACAAAGTCTGAATGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15346</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>60768</contig_pos>
        <strand>+</strand>
        <context>TCTAAAACTG[C/T]CAACAACGAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTG</left_flank>
        <right_flank>CAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGCCGAAAAAATTACGCTGAAATATATAAAAAGTGATAAAAAAGATCCCAAATAAGCAAAGTAAACGTTCATATGCATCAAAAACAGTGCGCGTCGCGGTCGCAGTCGCAAGCGTAGCGGTCGTCCTTGTAAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTGAGGCGGGCCTCGTGAATCGACACGAGCGCCGATCGCGGAGTTTTCATGTGCGAGTTATTTTTTCGATTTGAAATTTGGTTCCAACATTTTTTCATCTGAAACTTCTGAATTTATCTGAAAATGAAAATCTGAAAATTTGGAAATTCAAGTTATTTTCGAATAGTTATTTGACTTTATTCTTACCGGATAGAAATAAAACAAATGACAATACAAAGTCTGAATGACCGAAACCATTTGAATGTACGAATCTACAGTAGGGTTATCTATAAGCACTTTTGAACACTAATTTTAACTTTGTTTTGAATTTTTGAAATAATTGTCTCATCGGATTGTAACTGGGAAAGTGCAAAAAAGAATAAGGTGTCTATGAGGGTAAGAAAATGATCAACA</canonical>
            <polymorphic>TATGCCGAAAAAATTACGCTGAAATATATAAAAAGTGATAAAAAAGATCCCAAATAAGCAAAGTAAACGTTCATATGCATCAAAAACAGTGCGCGTCGCGGTCGCAGTCGCAAGCGTAGCGGTCGTCCTTGTAAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGYCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTGAGGCGGGCCTCGTGAATCGACACGAGCGCCGATCGCGGAGTTTTCATGTGCGAGTTATTTTTTCGATTTGAAATTTGGTTCCAACATTTTTTCATCTGAAACTTCTGAATTTATCTGAAAATGAAAATCTGAAAATTTGGAAATTCAAGTTATTTTCGAATAGTTATTTGACTTTATTCTTACCGGATAGAAATAAAACAAATGACAATACAAAGTCTGAATGACCGAAACCATTTGAATGTACGAATCTACAGTAGGGTTATCTATAAGCACTTTTGAACACTAATTTTAACTTTGTTTTGAATTTTTGAAATAATTGTCTCATCGGATTGTAACTGGGAAAGTGCAAAAAAGAATAAGGTGTCTATGAGGGTAAGAAAATGATCAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGCCAACATTTTAGGACAATAG</pcr_primer_p1>
		<pcr_primer_p2>CAAAACCGCTACAGTTAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTG</canonical_amplicon>
		<polymorphic_amplicon>TAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGYCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15347</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>60745</contig_pos>
        <strand>+</strand>
        <context>ACCAATGAAT[C/T]TTCCAAACAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAAT</left_flank>
        <right_flank>TTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGCCTAAAAAAATGAGATGGATTATGCCGAAAAAATTACGCTGAAATATATAAAAAGTGATAAAAAAGATCCCAAATAAGCAAAGTAAACGTTCATATGCATCAAAAACAGTGCGCGTCGCGGTCGCAGTCGCAAGCGTAGCGGTCGTCCTTGTAAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTGAGGCGGGCCTCGTGAATCGACACGAGCGCCGATCGCGGAGTTTTCATGTGCGAGTTATTTTTTCGATTTGAAATTTGGTTCCAACATTTTTTCATCTGAAACTTCTGAATTTATCTGAAAATGAAAATCTGAAAATTTGGAAATTCAAGTTATTTTCGAATAGTTATTTGACTTTATTCTTACCGGATAGAAATAAAACAAATGACAATACAAAGTCTGAATGACCGAAACCATTTGAATGTACGAATCTACAGTAGGGTTATCTATAAGCACTTTTGAACACTAATTTTAACTTTGTTTTGAATTTTTGAAATAATTGTCTCATCGGATTGTAACTGGGAAAGTGCAAAAAAGAATAAGGTGTCTA</canonical>
            <polymorphic>TCGCCTAAAAAAATGAGATGGATTATGCCGAAAAAATTACGCTGAAATATATAAAAAGTGATAAAAAAGATCCCAAATAAGCAAAGTAAACGTTCATATGCATCAAAAACAGTGCGCGTCGCGGTCGCAGTCGCAAGCGTAGCGGTCGTCCTTGTAAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATYTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTGAGGCGGGCCTCGTGAATCGACACGAGCGCCGATCGCGGAGTTTTCATGTGCGAGTTATTTTTTCGATTTGAAATTTGGTTCCAACATTTTTTCATCTGAAACTTCTGAATTTATCTGAAAATGAAAATCTGAAAATTTGGAAATTCAAGTTATTTTCGAATAGTTATTTGACTTTATTCTTACCGGATAGAAATAAAACAAATGACAATACAAAGTCTGAATGACCGAAACCATTTGAATGTACGAATCTACAGTAGGGTTATCTATAAGCACTTTTGAACACTAATTTTAACTTTGTTTTGAATTTTTGAAATAATTGTCTCATCGGATTGTAACTGGGAAAGTGCAAAAAAGAATAAGGTGTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>467 231 151 122 15 14</canonical_bands>
                <polymorphic_bands>467 231 165 122 15</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>467 231 151 122 29</canonical_bands>
                <polymorphic_bands>467 231 180 122</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGCCAACATTTTAGGACAATAG</pcr_primer_p1>
		<pcr_primer_p2>CAAAACCGCTACAGTTAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTG</canonical_amplicon>
		<polymorphic_amplicon>TAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATYTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15348</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>60725</contig_pos>
        <strand>+</strand>
        <context>TCCCATAGGA[C/T]TGAGTCTGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGA</left_flank>
        <right_flank>TGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAACCCTCCTCAGCAGGCATCGCCTAAAAAAATGAGATGGATTATGCCGAAAAAATTACGCTGAAATATATAAAAAGTGATAAAAAAGATCCCAAATAAGCAAAGTAAACGTTCATATGCATCAAAAACAGTGCGCGTCGCGGTCGCAGTCGCAAGCGTAGCGGTCGTCCTTGTAAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTGAGGCGGGCCTCGTGAATCGACACGAGCGCCGATCGCGGAGTTTTCATGTGCGAGTTATTTTTTCGATTTGAAATTTGGTTCCAACATTTTTTCATCTGAAACTTCTGAATTTATCTGAAAATGAAAATCTGAAAATTTGGAAATTCAAGTTATTTTCGAATAGTTATTTGACTTTATTCTTACCGGATAGAAATAAAACAAATGACAATACAAAGTCTGAATGACCGAAACCATTTGAATGTACGAATCTACAGTAGGGTTATCTATAAGCACTTTTGAACACTAATTTTAACTTTGTTTTGAATTTTTGAAATAATTGTCTCATCGGATTGTAACTGGGAAAGTGC</canonical>
            <polymorphic>AGAACCCTCCTCAGCAGGCATCGCCTAAAAAAATGAGATGGATTATGCCGAAAAAATTACGCTGAAATATATAAAAAGTGATAAAAAAGATCCCAAATAAGCAAAGTAAACGTTCATATGCATCAAAAACAGTGCGCGTCGCGGTCGCAGTCGCAAGCGTAGCGGTCGTCCTTGTAAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGAYTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTGAGGCGGGCCTCGTGAATCGACACGAGCGCCGATCGCGGAGTTTTCATGTGCGAGTTATTTTTTCGATTTGAAATTTGGTTCCAACATTTTTTCATCTGAAACTTCTGAATTTATCTGAAAATGAAAATCTGAAAATTTGGAAATTCAAGTTATTTTCGAATAGTTATTTGACTTTATTCTTACCGGATAGAAATAAAACAAATGACAATACAAAGTCTGAATGACCGAAACCATTTGAATGTACGAATCTACAGTAGGGTTATCTATAAGCACTTTTGAACACTAATTTTAACTTTGTTTTGAATTTTTGAAATAATTGTCTCATCGGATTGTAACTGGGAAAGTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNGTC</site>
                <isoschizomers>
                    <enzyme>AspI</enzyme>
                    <enzyme>PflFI</enzyme>
                    <enzyme>PsyI</enzyme>
                    <enzyme>TelI</enzyme>
                    <enzyme>Tth111I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 490 10</canonical_bands>
                <polymorphic_bands>990 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGCCAACATTTTAGGACAATAG</pcr_primer_p1>
		<pcr_primer_p2>CAAAACCGCTACAGTTAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTG</canonical_amplicon>
		<polymorphic_amplicon>TAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGAYTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15349</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>60707</contig_pos>
        <strand>+</strand>
        <context>ATGAAAAGTY[G/T]GTCGGATTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTC</left_flank>
        <right_flank>GTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACATTGTCGTTATTGGTAGAACCCTCCTCAGCAGGCATCGCCTAAAAAAATGAGATGGATTATGCCGAAAAAATTACGCTGAAATATATAAAAAGTGATAAAAAAGATCCCAAATAAGCAAAGTAAACGTTCATATGCATCAAAAACAGTGCGCGTCGCGGTCGCAGTCGCAAGCGTAGCGGTCGTCCTTGTAAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTGAGGCGGGCCTCGTGAATCGACACGAGCGCCGATCGCGGAGTTTTCATGTGCGAGTTATTTTTTCGATTTGAAATTTGGTTCCAACATTTTTTCATCTGAAACTTCTGAATTTATCTGAAAATGAAAATCTGAAAATTTGGAAATTCAAGTTATTTTCGAATAGTTATTTGACTTTATTCTTACCGGATAGAAATAAAACAAATGACAATACAAAGTCTGAATGACCGAAACCATTTGAATGTACGAATCTACAGTAGGGTTATCTATAAGCACTTTTGAACACTAATTTTAACTTTGTTTTGAATTTTTGAAATAATTGTCTCATCGGA</canonical>
            <polymorphic>GACATTGTCGTTATTGGTAGAACCCTCCTCAGCAGGCATCGCCTAAAAAAATGAGATGGATTATGCCGAAAAAATTACGCTGAAATATATAAAAAGTGATAAAAAAGATCCCAAATAAGCAAAGTAAACGTTCATATGCATCAAAAACAGTGCGCGTCGCGGTCGCAGTCGCAAGCGTAGCGGTCGTCCTTGTAAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCKGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTGAGGCGGGCCTCGTGAATCGACACGAGCGCCGATCGCGGAGTTTTCATGTGCGAGTTATTTTTTCGATTTGAAATTTGGTTCCAACATTTTTTCATCTGAAACTTCTGAATTTATCTGAAAATGAAAATCTGAAAATTTGGAAATTCAAGTTATTTTCGAATAGTTATTTGACTTTATTCTTACCGGATAGAAATAAAACAAATGACAATACAAAGTCTGAATGACCGAAACCATTTGAATGTACGAATCTACAGTAGGGTTATCTATAAGCACTTTTGAACACTAATTTTAACTTTGTTTTGAATTTTTGAAATAATTGTCTCATCGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGCCAACATTTTAGGACAATAG</pcr_primer_p1>
		<pcr_primer_p2>CAAAACCGCTACAGTTAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTG</canonical_amplicon>
		<polymorphic_amplicon>TAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCKGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15350</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>60706</contig_pos>
        <strand>+</strand>
        <context>AATGAAAAGT[C/T]KGTCGGATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGT</left_flank>
        <right_flank>TGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACATTGTCGTTATTGGTAGAACCCTCCTCAGCAGGCATCGCCTAAAAAAATGAGATGGATTATGCCGAAAAAATTACGCTGAAATATATAAAAAGTGATAAAAAAGATCCCAAATAAGCAAAGTAAACGTTCATATGCATCAAAAACAGTGCGCGTCGCGGTCGCAGTCGCAAGCGTAGCGGTCGTCCTTGTAAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTGAGGCGGGCCTCGTGAATCGACACGAGCGCCGATCGCGGAGTTTTCATGTGCGAGTTATTTTTTCGATTTGAAATTTGGTTCCAACATTTTTTCATCTGAAACTTCTGAATTTATCTGAAAATGAAAATCTGAAAATTTGGAAATTCAAGTTATTTTCGAATAGTTATTTGACTTTATTCTTACCGGATAGAAATAAAACAAATGACAATACAAAGTCTGAATGACCGAAACCATTTGAATGTACGAATCTACAGTAGGGTTATCTATAAGCACTTTTGAACACTAATTTTAACTTTGTTTTGAATTTTTGAAATAATTGTCTCATCGG</canonical>
            <polymorphic>AGACATTGTCGTTATTGGTAGAACCCTCCTCAGCAGGCATCGCCTAAAAAAATGAGATGGATTATGCCGAAAAAATTACGCTGAAATATATAAAAAGTGATAAAAAAGATCCCAAATAAGCAAAGTAAACGTTCATATGCATCAAAAACAGTGCGCGTCGCGGTCGCAGTCGCAAGCGTAGCGGTCGTCCTTGTAAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTYTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTGAGGCGGGCCTCGTGAATCGACACGAGCGCCGATCGCGGAGTTTTCATGTGCGAGTTATTTTTTCGATTTGAAATTTGGTTCCAACATTTTTTCATCTGAAACTTCTGAATTTATCTGAAAATGAAAATCTGAAAATTTGGAAATTCAAGTTATTTTCGAATAGTTATTTGACTTTATTCTTACCGGATAGAAATAAAACAAATGACAATACAAAGTCTGAATGACCGAAACCATTTGAATGTACGAATCTACAGTAGGGTTATCTATAAGCACTTTTGAACACTAATTTTAACTTTGTTTTGAATTTTTGAAATAATTGTCTCATCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGCCAACATTTTAGGACAATAG</pcr_primer_p1>
		<pcr_primer_p2>CAAAACCGCTACAGTTAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTG</canonical_amplicon>
		<polymorphic_amplicon>TAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTYTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15351</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>60688</contig_pos>
        <strand>+</strand>
        <context>CAAAAACGAC[A/G]TGAAAACAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGAC</left_flank>
        <right_flank>TGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTCCATTTCCAAGACGAAGACATTGTCGTTATTGGTAGAACCCTCCTCAGCAGGCATCGCCTAAAAAAATGAGATGGATTATGCCGAAAAAATTACGCTGAAATATATAAAAAGTGATAAAAAAGATCCCAAATAAGCAAAGTAAACGTTCATATGCATCAAAAACAGTGCGCGTCGCGGTCGCAGTCGCAAGCGTAGCGGTCGTCCTTGTAAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTGAGGCGGGCCTCGTGAATCGACACGAGCGCCGATCGCGGAGTTTTCATGTGCGAGTTATTTTTTCGATTTGAAATTTGGTTCCAACATTTTTTCATCTGAAACTTCTGAATTTATCTGAAAATGAAAATCTGAAAATTTGGAAATTCAAGTTATTTTCGAATAGTTATTTGACTTTATTCTTACCGGATAGAAATAAAACAAATGACAATACAAAGTCTGAATGACCGAAACCATTTGAATGTACGAATCTACAGTAGGGTTATCTATAAGCACTTTTGAACACTAATTTTAACTTTGTTTTGAATTTTTG</canonical>
            <polymorphic>CGTCCATTTCCAAGACGAAGACATTGTCGTTATTGGTAGAACCCTCCTCAGCAGGCATCGCCTAAAAAAATGAGATGGATTATGCCGAAAAAATTACGCTGAAATATATAAAAAGTGATAAAAAAGATCCCAAATAAGCAAAGTAAACGTTCATATGCATCAAAAACAGTGCGCGTCGCGGTCGCAGTCGCAAGCGTAGCGGTCGTCCTTGTAAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACRTGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTGAGGCGGGCCTCGTGAATCGACACGAGCGCCGATCGCGGAGTTTTCATGTGCGAGTTATTTTTTCGATTTGAAATTTGGTTCCAACATTTTTTCATCTGAAACTTCTGAATTTATCTGAAAATGAAAATCTGAAAATTTGGAAATTCAAGTTATTTTCGAATAGTTATTTGACTTTATTCTTACCGGATAGAAATAAAACAAATGACAATACAAAGTCTGAATGACCGAAACCATTTGAATGTACGAATCTACAGTAGGGTTATCTATAAGCACTTTTGAACACTAATTTTAACTTTGTTTTGAATTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>499 265 236</canonical_bands>
                <polymorphic_bands>735 265</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGCCAACATTTTAGGACAATAG</pcr_primer_p1>
		<pcr_primer_p2>CAAAACCGCTACAGTTAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTG</canonical_amplicon>
		<polymorphic_amplicon>TAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACRTGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15352</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>60661</contig_pos>
        <strand>+</strand>
        <context>GTTAAGATAA[A/G]AAGAGAAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAA</left_flank>
        <right_flank>AAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATGCAGTGAAGATCCCCACGAAATCCGTCCATTTCCAAGACGAAGACATTGTCGTTATTGGTAGAACCCTCCTCAGCAGGCATCGCCTAAAAAAATGAGATGGATTATGCCGAAAAAATTACGCTGAAATATATAAAAAGTGATAAAAAAGATCCCAAATAAGCAAAGTAAACGTTCATATGCATCAAAAACAGTGCGCGTCGCGGTCGCAGTCGCAAGCGTAGCGGTCGTCCTTGTAAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTGAGGCGGGCCTCGTGAATCGACACGAGCGCCGATCGCGGAGTTTTCATGTGCGAGTTATTTTTTCGATTTGAAATTTGGTTCCAACATTTTTTCATCTGAAACTTCTGAATTTATCTGAAAATGAAAATCTGAAAATTTGGAAATTCAAGTTATTTTCGAATAGTTATTTGACTTTATTCTTACCGGATAGAAATAAAACAAATGACAATACAAAGTCTGAATGACCGAAACCATTTGAATGTACGAATCTACAGTAGGGTTATCTATAAGCACTTTTGAACAC</canonical>
            <polymorphic>TCATGCAGTGAAGATCCCCACGAAATCCGTCCATTTCCAAGACGAAGACATTGTCGTTATTGGTAGAACCCTCCTCAGCAGGCATCGCCTAAAAAAATGAGATGGATTATGCCGAAAAAATTACGCTGAAATATATAAAAAGTGATAAAAAAGATCCCAAATAAGCAAAGTAAACGTTCATATGCATCAAAAACAGTGCGCGTCGCGGTCGCAGTCGCAAGCGTAGCGGTCGTCCTTGTAAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAARAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTGAGGCGGGCCTCGTGAATCGACACGAGCGCCGATCGCGGAGTTTTCATGTGCGAGTTATTTTTTCGATTTGAAATTTGGTTCCAACATTTTTTCATCTGAAACTTCTGAATTTATCTGAAAATGAAAATCTGAAAATTTGGAAATTCAAGTTATTTTCGAATAGTTATTTGACTTTATTCTTACCGGATAGAAATAAAACAAATGACAATACAAAGTCTGAATGACCGAAACCATTTGAATGTACGAATCTACAGTAGGGTTATCTATAAGCACTTTTGAACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTATACATATGAGACGAAGGAC</pcr_primer_p1>
		<pcr_primer_p2>TTTGGAGTTACTATTGCGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAA</canonical_amplicon>
		<polymorphic_amplicon>CACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAARAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15353</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>60625</contig_pos>
        <strand>+</strand>
        <context>AGGACAAATT[C/G]CGATAGCCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATT</left_flank>
        <right_flank>CGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCTCCCTCTTCGTAGTTGCAAATTTTGAGACAAGTCATGCAGTGAAGATCCCCACGAAATCCGTCCATTTCCAAGACGAAGACATTGTCGTTATTGGTAGAACCCTCCTCAGCAGGCATCGCCTAAAAAAATGAGATGGATTATGCCGAAAAAATTACGCTGAAATATATAAAAAGTGATAAAAAAGATCCCAAATAAGCAAAGTAAACGTTCATATGCATCAAAAACAGTGCGCGTCGCGGTCGCAGTCGCAAGCGTAGCGGTCGTCCTTGTAAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTGAGGCGGGCCTCGTGAATCGACACGAGCGCCGATCGCGGAGTTTTCATGTGCGAGTTATTTTTTCGATTTGAAATTTGGTTCCAACATTTTTTCATCTGAAACTTCTGAATTTATCTGAAAATGAAAATCTGAAAATTTGGAAATTCAAGTTATTTTCGAATAGTTATTTGACTTTATTCTTACCGGATAGAAATAAAACAAATGACAATACAAAGTCTGAATGACCGAAACCATTTGAATGTACGAA</canonical>
            <polymorphic>AAGCTCCCTCTTCGTAGTTGCAAATTTTGAGACAAGTCATGCAGTGAAGATCCCCACGAAATCCGTCCATTTCCAAGACGAAGACATTGTCGTTATTGGTAGAACCCTCCTCAGCAGGCATCGCCTAAAAAAATGAGATGGATTATGCCGAAAAAATTACGCTGAAATATATAAAAAGTGATAAAAAAGATCCCAAATAAGCAAAGTAAACGTTCATATGCATCAAAAACAGTGCGCGTCGCGGTCGCAGTCGCAAGCGTAGCGGTCGTCCTTGTAAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTSCGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTGAGGCGGGCCTCGTGAATCGACACGAGCGCCGATCGCGGAGTTTTCATGTGCGAGTTATTTTTTCGATTTGAAATTTGGTTCCAACATTTTTTCATCTGAAACTTCTGAATTTATCTGAAAATGAAAATCTGAAAATTTGGAAATTCAAGTTATTTTCGAATAGTTATTTGACTTTATTCTTACCGGATAGAAATAAAACAAATGACAATACAAAGTCTGAATGACCGAAACCATTTGAATGTACGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>473 329 106 36 26 22 8</canonical_bands>
                <polymorphic_bands>802 106 36 26 22 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>501 243 88 85 29 21 14 10 9</canonical_bands>
                <polymorphic_bands>586 243 88 29 21 14 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACTATACATATGAGACGAAGGAC</pcr_primer_p1>
		<pcr_primer_p2>TTTGGAGTTACTATTGCGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAA</canonical_amplicon>
		<polymorphic_amplicon>CACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTSCGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15354</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>60609</contig_pos>
        <strand>+</strand>
        <context>AGAAGAAAGA[C/T]AACGAAGGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGA</left_flank>
        <right_flank>AACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGCATCGCAGCAGTAAGCTCCCTCTTCGTAGTTGCAAATTTTGAGACAAGTCATGCAGTGAAGATCCCCACGAAATCCGTCCATTTCCAAGACGAAGACATTGTCGTTATTGGTAGAACCCTCCTCAGCAGGCATCGCCTAAAAAAATGAGATGGATTATGCCGAAAAAATTACGCTGAAATATATAAAAAGTGATAAAAAAGATCCCAAATAAGCAAAGTAAACGTTCATATGCATCAAAAACAGTGCGCGTCGCGGTCGCAGTCGCAAGCGTAGCGGTCGTCCTTGTAAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTGAGGCGGGCCTCGTGAATCGACACGAGCGCCGATCGCGGAGTTTTCATGTGCGAGTTATTTTTTCGATTTGAAATTTGGTTCCAACATTTTTTCATCTGAAACTTCTGAATTTATCTGAAAATGAAAATCTGAAAATTTGGAAATTCAAGTTATTTTCGAATAGTTATTTGACTTTATTCTTACCGGATAGAAATAAAACAAATGACAATACAAAGTCTGAATGACCGAAAC</canonical>
            <polymorphic>ATGGCATCGCAGCAGTAAGCTCCCTCTTCGTAGTTGCAAATTTTGAGACAAGTCATGCAGTGAAGATCCCCACGAAATCCGTCCATTTCCAAGACGAAGACATTGTCGTTATTGGTAGAACCCTCCTCAGCAGGCATCGCCTAAAAAAATGAGATGGATTATGCCGAAAAAATTACGCTGAAATATATAAAAAGTGATAAAAAAGATCCCAAATAAGCAAAGTAAACGTTCATATGCATCAAAAACAGTGCGCGTCGCGGTCGCAGTCGCAAGCGTAGCGGTCGTCCTTGTAAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGAYAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTGAGGCGGGCCTCGTGAATCGACACGAGCGCCGATCGCGGAGTTTTCATGTGCGAGTTATTTTTTCGATTTGAAATTTGGTTCCAACATTTTTTCATCTGAAACTTCTGAATTTATCTGAAAATGAAAATCTGAAAATTTGGAAATTCAAGTTATTTTCGAATAGTTATTTGACTTTATTCTTACCGGATAGAAATAAAACAAATGACAATACAAAGTCTGAATGACCGAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGTTATGCATTTTCAAGAGAC</pcr_primer_p1>
		<pcr_primer_p2>GTCGTTTTTGAGATTTTTCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>192</pcr_amplicon_size>
		<canonical_amplicon>ATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGAC</canonical_amplicon>
		<polymorphic_amplicon>ATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGAYAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15355</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>60588</contig_pos>
        <strand>+</strand>
        <context>CGAAGGACWG[A/G]CAAAATGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTG</left_flank>
        <right_flank>CAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGCTTCTGGCATGCGCTCCATGGCATCGCAGCAGTAAGCTCCCTCTTCGTAGTTGCAAATTTTGAGACAAGTCATGCAGTGAAGATCCCCACGAAATCCGTCCATTTCCAAGACGAAGACATTGTCGTTATTGGTAGAACCCTCCTCAGCAGGCATCGCCTAAAAAAATGAGATGGATTATGCCGAAAAAATTACGCTGAAATATATAAAAAGTGATAAAAAAGATCCCAAATAAGCAAAGTAAACGTTCATATGCATCAAAAACAGTGCGCGTCGCGGTCGCAGTCGCAAGCGTAGCGGTCGTCCTTGTAAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTGAGGCGGGCCTCGTGAATCGACACGAGCGCCGATCGCGGAGTTTTCATGTGCGAGTTATTTTTTCGATTTGAAATTTGGTTCCAACATTTTTTCATCTGAAACTTCTGAATTTATCTGAAAATGAAAATCTGAAAATTTGGAAATTCAAGTTATTTTCGAATAGTTATTTGACTTTATTCTTACCGGATAGAAATAAAACAAATGACAATA</canonical>
            <polymorphic>TCTGCTTCTGGCATGCGCTCCATGGCATCGCAGCAGTAAGCTCCCTCTTCGTAGTTGCAAATTTTGAGACAAGTCATGCAGTGAAGATCCCCACGAAATCCGTCCATTTCCAAGACGAAGACATTGTCGTTATTGGTAGAACCCTCCTCAGCAGGCATCGCCTAAAAAAATGAGATGGATTATGCCGAAAAAATTACGCTGAAATATATAAAAAGTGATAAAAAAGATCCCAAATAAGCAAAGTAAACGTTCATATGCATCAAAAACAGTGCGCGTCGCGGTCGCAGTCGCAAGCGTAGCGGTCGTCCTTGTAAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGRCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTGAGGCGGGCCTCGTGAATCGACACGAGCGCCGATCGCGGAGTTTTCATGTGCGAGTTATTTTTTCGATTTGAAATTTGGTTCCAACATTTTTTCATCTGAAACTTCTGAATTTATCTGAAAATGAAAATCTGAAAATTTGGAAATTCAAGTTATTTTCGAATAGTTATTTGACTTTATTCTTACCGGATAGAAATAAAACAAATGACAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAGCGTTGTAAATAGAGAGATT</pcr_primer_p1>
		<pcr_primer_p2>TTGTCCTAAAATGTTGGCTATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAA</canonical_amplicon>
		<polymorphic_amplicon>AAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGRCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15356</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>60586</contig_pos>
        <strand>+</strand>
        <context>GACGAAGGAC[A/T]GRCAAAATGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGAC</left_flank>
        <right_flank>GGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCTGCTTCTGGCATGCGCTCCATGGCATCGCAGCAGTAAGCTCCCTCTTCGTAGTTGCAAATTTTGAGACAAGTCATGCAGTGAAGATCCCCACGAAATCCGTCCATTTCCAAGACGAAGACATTGTCGTTATTGGTAGAACCCTCCTCAGCAGGCATCGCCTAAAAAAATGAGATGGATTATGCCGAAAAAATTACGCTGAAATATATAAAAAGTGATAAAAAAGATCCCAAATAAGCAAAGTAAACGTTCATATGCATCAAAAACAGTGCGCGTCGCGGTCGCAGTCGCAAGCGTAGCGGTCGTCCTTGTAAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTGAGGCGGGCCTCGTGAATCGACACGAGCGCCGATCGCGGAGTTTTCATGTGCGAGTTATTTTTTCGATTTGAAATTTGGTTCCAACATTTTTTCATCTGAAACTTCTGAATTTATCTGAAAATGAAAATCTGAAAATTTGGAAATTCAAGTTATTTTCGAATAGTTATTTGACTTTATTCTTACCGGATAGAAATAAAACAAATGACAA</canonical>
            <polymorphic>CATCTGCTTCTGGCATGCGCTCCATGGCATCGCAGCAGTAAGCTCCCTCTTCGTAGTTGCAAATTTTGAGACAAGTCATGCAGTGAAGATCCCCACGAAATCCGTCCATTTCCAAGACGAAGACATTGTCGTTATTGGTAGAACCCTCCTCAGCAGGCATCGCCTAAAAAAATGAGATGGATTATGCCGAAAAAATTACGCTGAAATATATAAAAAGTGATAAAAAAGATCCCAAATAAGCAAAGTAAACGTTCATATGCATCAAAAACAGTGCGCGTCGCGGTCGCAGTCGCAAGCGTAGCGGTCGTCCTTGTAAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACWGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTGAGGCGGGCCTCGTGAATCGACACGAGCGCCGATCGCGGAGTTTTCATGTGCGAGTTATTTTTTCGATTTGAAATTTGGTTCCAACATTTTTTCATCTGAAACTTCTGAATTTATCTGAAAATGAAAATCTGAAAATTTGGAAATTCAAGTTATTTTCGAATAGTTATTTGACTTTATTCTTACCGGATAGAAATAAAACAAATGACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAGCGTTGTAAATAGAGAGATT</pcr_primer_p1>
		<pcr_primer_p2>TTGTCCTAAAATGTTGGCTATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAA</canonical_amplicon>
		<polymorphic_amplicon>AAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACWGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15357</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>60540</contig_pos>
        <strand>+</strand>
        <context>GAAGAGGCAA[A/G]ATGGGAGGCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAA</left_flank>
        <right_flank>ATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGTTTAGTAGTAACTATCAAAGTTAGCTTCTACAAAAATACTTACATCTGCTTCTGGCATGCGCTCCATGGCATCGCAGCAGTAAGCTCCCTCTTCGTAGTTGCAAATTTTGAGACAAGTCATGCAGTGAAGATCCCCACGAAATCCGTCCATTTCCAAGACGAAGACATTGTCGTTATTGGTAGAACCCTCCTCAGCAGGCATCGCCTAAAAAAATGAGATGGATTATGCCGAAAAAATTACGCTGAAATATATAAAAAGTGATAAAAAAGATCCCAAATAAGCAAAGTAAACGTTCATATGCATCAAAAACAGTGCGCGTCGCGGTCGCAGTCGCAAGCGTAGCGGTCGTCCTTGTAAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTGAGGCGGGCCTCGTGAATCGACACGAGCGCCGATCGCGGAGTTTTCATGTGCGAGTTATTTTTTCGATTTGAAATTTGGTTCCAACATTTTTTCATCTGAAACTTCTGAATTTATCTGAAAATGAAAATCTGAAAATTTGGAAATTCAAGTTATTTTCGAATA</canonical>
            <polymorphic>TGAGTTTAGTAGTAACTATCAAAGTTAGCTTCTACAAAAATACTTACATCTGCTTCTGGCATGCGCTCCATGGCATCGCAGCAGTAAGCTCCCTCTTCGTAGTTGCAAATTTTGAGACAAGTCATGCAGTGAAGATCCCCACGAAATCCGTCCATTTCCAAGACGAAGACATTGTCGTTATTGGTAGAACCCTCCTCAGCAGGCATCGCCTAAAAAAATGAGATGGATTATGCCGAAAAAATTACGCTGAAATATATAAAAAGTGATAAAAAAGATCCCAAATAAGCAAAGTAAACGTTCATATGCATCAAAAACAGTGCGCGTCGCGGTCGCAGTCGCAAGCGTAGCGGTCGTCCTTGTAAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAARATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTGAGGCGGGCCTCGTGAATCGACACGAGCGCCGATCGCGGAGTTTTCATGTGCGAGTTATTTTTTCGATTTGAAATTTGGTTCCAACATTTTTTCATCTGAAACTTCTGAATTTATCTGAAAATGAAAATCTGAAAATTTGGAAATTCAAGTTATTTTCGAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAGCGTTGTAAATAGAGAGATT</pcr_primer_p1>
		<pcr_primer_p2>TTGTCCTAAAATGTTGGCTATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAA</canonical_amplicon>
		<polymorphic_amplicon>AAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAARATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15358</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>60494</contig_pos>
        <strand>+</strand>
        <context>GCCAACCTCT[A/C]TATTGTTATG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCT</left_flank>
        <right_flank>TATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATTTATTTATAGTCTGATCATTTTTGAAGATTTAATGATAATTTTGAGTTTAGTAGTAACTATCAAAGTTAGCTTCTACAAAAATACTTACATCTGCTTCTGGCATGCGCTCCATGGCATCGCAGCAGTAAGCTCCCTCTTCGTAGTTGCAAATTTTGAGACAAGTCATGCAGTGAAGATCCCCACGAAATCCGTCCATTTCCAAGACGAAGACATTGTCGTTATTGGTAGAACCCTCCTCAGCAGGCATCGCCTAAAAAAATGAGATGGATTATGCCGAAAAAATTACGCTGAAATATATAAAAAGTGATAAAAAAGATCCCAAATAAGCAAAGTAAACGTTCATATGCATCAAAAACAGTGCGCGTCGCGGTCGCAGTCGCAAGCGTAGCGGTCGTCCTTGTAAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTGAGGCGGGCCTCGTGAATCGACACGAGCGCCGATCGCGGAGTTTTCATGTGCGAGTTATTTTTTCGATTTGAAATTTGGTTCCAACATTTTTTCATCTGAAACTTCTGAATTTATCT</canonical>
            <polymorphic>GGATTTATTTATAGTCTGATCATTTTTGAAGATTTAATGATAATTTTGAGTTTAGTAGTAACTATCAAAGTTAGCTTCTACAAAAATACTTACATCTGCTTCTGGCATGCGCTCCATGGCATCGCAGCAGTAAGCTCCCTCTTCGTAGTTGCAAATTTTGAGACAAGTCATGCAGTGAAGATCCCCACGAAATCCGTCCATTTCCAAGACGAAGACATTGTCGTTATTGGTAGAACCCTCCTCAGCAGGCATCGCCTAAAAAAATGAGATGGATTATGCCGAAAAAATTACGCTGAAATATATAAAAAGTGATAAAAAAGATCCCAAATAAGCAAAGTAAACGTTCATATGCATCAAAAACAGTGCGCGTCGCGGTCGCAGTCGCAAGCGTAGCGGTCGTCCTTGTAAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTMTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAATAGTTAAGATAAAAAGAGAAGAAAAATCTCAAAAACGACATGAAAACAATGAAAAGTCTGTCGGATTCCCATAGGACTGAGTCTGAACCAATGAATCTTCCAAACACTCTCTAAAACTGCCAACAACGACAAAACGCAATAGTAACTCCAAAATCGCGATTATCTGTGTTTCAAAATGATTATCGATGAAATTATTAAAAATTAAGACGTTTTTAACTGTAGCGGTTTTGAGGCGGGCCTCGTGAATCGACACGAGCGCCGATCGCGGAGTTTTCATGTGCGAGTTATTTTTTCGATTTGAAATTTGGTTCCAACATTTTTTCATCTGAAACTTCTGAATTTATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAGCGTTGTAAATAGAGAGATT</pcr_primer_p1>
		<pcr_primer_p2>TTGTCCTAAAATGTTGGCTATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTCTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAA</canonical_amplicon>
		<polymorphic_amplicon>AAGAGCGTTGTAAATAGAGAGATTTAGAGAAAAGTGAGCCGTGTGGAAGAGAAAAAAGGAGACGAGGGCCGCAGAATTGATCAGCCAACCTCTMTATTGTTATGCATTTTCAAGAGACGAGATGAAGAGGAAGAGGCAAAATGGGAGGCGGGAGGATTACACACTATACATATGAGACGAAGGACTGGCAAAATGAATAGAAGAAAGATAACGAAGGACAAATTCCGATAGCCAACATTTTAGGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15359</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>81340</contig_pos>
        <strand>+</strand>
        <context>ATTCTATTTA[G/T]TAGTACACTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATATCTTTTCAAATGGAAACTTTTACTTTCATTACTCACATTCTATTTA</left_flank>
        <right_flank>TAGTACACTATTTTTGAGTACTTTAGCACAACTTTTGTCATTTCAACTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTATTCTGTAAGTTGCAGTCCAATTTTGCAGAGGTTCCCACTCGTTTTGGATTGAAAATAGGCCGAGGTTGAGACTGGATTGGAGGACCACTGGCAAGGAATACCTGAAAAACAGATTTCAAAGTTTTTATTATTCGAAGGCCATCTGAATAAGAATTCTTACCGTGATTGTTCTATTAGAATCCTACCCTTTACATGCTTTGAGCTCAATTATCCCAGCTCTTTCAAGAGATATCAAAGAACTGTCAACTAATAAAATATTGGTTATCTTATGGTGAATAATTTATCAGTTGAATGTTTTTTGTTTCACTTGAAGGTCCCGAGATAATTGAGCTTAAAAAGCACGTGAAGAGCTTCTATTAGAGCAAATACGGTATTTTGTTTATTTCTTTGTTTTGTTTACATAAAACGTGAAGATTTGTGATTTTTTTGAGTTGAAAAGTCATAAATATCTTTTCAAATGGAAACTTTTACTTTCATTACTCACATTCTATTTAGTAGTACACTATTTTTGAGTACTTTAGCACAACTTTTGTCATTTCAACTCACCGGATGTATATAGTGATGTGGTGGCATGTTGAGACAATGCTCGTCATGAATCTCATCCTCTTGAATAATGCTTGGGAATAAAATAGTGGATACCGAGAAGACAATAAACACGACACAGAATATTAATAATAGTAAAAATAGGAATAAGCGGCCTATAATCCGCATGTTTCTTTTCTTATTGGTTGCCAAATCTTGACTTTGTATTGTTCATTTTCTGCCTAATTCTATATGAAAGAGAAACCAAAAAAAGCGGAAAAGAATTAACGAAACAGGAATAAAAAACTGTTATCTATCTCATACAGCAGTCGGTTTAGTCTGAGATTCCGGAAAAACAATAACTGTTCTTGTGTTCTTCGACGCAGGCGACGCATAATTGGGTCGCGCGCATATTTCAAGGACGGATTTCACCTACTTTTCACACATTATCTCTTACTTCAAATCATCATTGT</canonical>
            <polymorphic>TCTTATTCTGTAAGTTGCAGTCCAATTTTGCAGAGGTTCCCACTCGTTTTGGATTGAAAATAGGCCGAGGTTGAGACTGGATTGGAGGACCACTGGCAAGGAATACCTGAAAAACAGATTTCAAAGTTTTTATTATTCGAAGGCCATCTGAATAAGAATTCTTACCGTGATTGTTCTATTAGAATCCTACCCTTTACATGCTTTGAGCTCAATTATCCCAGCTCTTTCAAGAGATATCAAAGAACTGTCAACTAATAAAATATTGGTTATCTTATGGTGAATAATTTATCAGTTGAATGTTTTTTGTTTCACTTGAAGGTCCCGAGATAATTGAGCTTAAAAAGCACGTGAAGAGCTTCTATTAGAGCAAATACGGTATTTTGTTTATTTCTTTGTTTTGTTTACATAAAACGTGAAGATTTGTGATTTTTTTGAGTTGAAAAGTCATAAATATCTTTTCAAATGGAAACTTTTACTTTCATTACTCACATTCTATTTAKTAGTACACTATTTTTGAGTACTTTAGCACAACTTTTGTCATTTCAACTCACCGGATGTATATAGTGATGTGGTGGCATGTTGAGACAATGCTCGTCATGAATCTCATCCTCTTGAATAATGCTTGGGAATAAAATAGTGGATACCGAGAAGACAATAAACACGACACAGAATATTAATAATAGTAAAAATAGGAATAAGCGGCCTATAATCCGCATGTTTCTTTTCTTATTGGTTGCCAAATCTTGACTTTGTATTGTTCATTTTCTGCCTAATTCTATATGAAAGAGAAACCAAAAAAAGCGGAAAAGAATTAACGAAACAGGAATAAAAAACTGTTATCTATCTCATACAGCAGTCGGTTTAGTCTGAGATTCCGGAAAAACAATAACTGTTCTTGTGTTCTTCGACGCAGGCGACGCATAATTGGGTCGCGCGCATATTTCAAGGACGGATTTCACCTACTTTTCACACATTATCTCTTACTTCAAATCATCATTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAACGTGAAGATTTGTGATTT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTCTTCTCGGTATCCACTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAAACGTGAAGATTTGTGATTTTTTTGAGTTGAAAAGTCATAAATATCTTTTCAAATGGAAACTTTTACTTTCATTACTCACATTCTATTTAGTAGTACACTATTTTTGAGTACTTTAGCACAACTTTTGTCATTTCAACTCACCGGATGTATATAGTGATGTGGTGGCATGTTGAGACAATGCTCGTCATGAATCTCATCCTCTTGAATAATGCTTGGGAATAAAATAGTGGATACCGAGAAGACAAT</canonical_amplicon>
		<polymorphic_amplicon>TAAAACGTGAAGATTTGTGATTTTTTTGAGTTGAAAAGTCATAAATATCTTTTCAAATGGAAACTTTTACTTTCATTACTCACATTCTATTTAKTAGTACACTATTTTTGAGTACTTTAGCACAACTTTTGTCATTTCAACTCACCGGATGTATATAGTGATGTGGTGGCATGTTGAGACAATGCTCGTCATGAATCTCATCCTCTTGAATAATGCTTGGGAATAAAATAGTGGATACCGAGAAGACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15360</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>81603</contig_pos>
        <strand>+</strand>
        <context>TATTGTTCAT[C/T]TTCTGCCTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCATGTTTCTTTTCTTATTGGTTGCCAAATCTTGACTTTGTATTGTTCAT</left_flank>
        <right_flank>TTCTGCCTAATTCTATATGAAAGAGAAACCAAAAAAAGCGGAAAAGAATT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTTATCTTATGGTGAATAATTTATCAGTTGAATGTTTTTTGTTTCACTTGAAGGTCCCGAGATAATTGAGCTTAAAAAGCACGTGAAGAGCTTCTATTAGAGCAAATACGGTATTTTGTTTATTTCTTTGTTTTGTTTACATAAAACGTGAAGATTTGTGATTTTTTTGAGTTGAAAAGTCATAAATATCTTTTCAAATGGAAACTTTTACTTTCATTACTCACATTCTATTTAGTAGTACACTATTTTTGAGTACTTTAGCACAACTTTTGTCATTTCAACTCACCGGATGTATATAGTGATGTGGTGGCATGTTGAGACAATGCTCGTCATGAATCTCATCCTCTTGAATAATGCTTGGGAATAAAATAGTGGATACCGAGAAGACAATAAACACGACACAGAATATTAATAATAGTAAAAATAGGAATAAGCGGCCTATAATCCGCATGTTTCTTTTCTTATTGGTTGCCAAATCTTGACTTTGTATTGTTCATTTTCTGCCTAATTCTATATGAAAGAGAAACCAAAAAAAGCGGAAAAGAATTAACGAAACAGGAATAAAAAACTGTTATCTATCTCATACAGCAGTCGGTTTAGTCTGAGATTCCGGAAAAACAATAACTGTTCTTGTGTTCTTCGACGCAGGCGACGCATAATTGGGTCGCGCGCATATTTCAAGGACGGATTTCACCTACTTTTCACACATTATCTCTTACTTCAAATCATCATTGTGGTTTTTCAAATTTAGAATAGAACCATTCATGTAAAAAAAATTAATGGAAAACCTGTACATTTGTATTATCAGAGAGGATTAAAAATGATGACCAGGATAATAAGTGGGATGGATTCGGACGATGAGGGAAGAGAAAAGTGTTTCTAGATAAGCTAACCGGTTAAAATCGCAAATTTTTTAACTTTTTAAAACTTTGAGAATGATGTAAACAGTAAAAAAAATTATTACAGAAGTTTTACATTTTCCTCAGACAGATATGACT</canonical>
            <polymorphic>TGGTTATCTTATGGTGAATAATTTATCAGTTGAATGTTTTTTGTTTCACTTGAAGGTCCCGAGATAATTGAGCTTAAAAAGCACGTGAAGAGCTTCTATTAGAGCAAATACGGTATTTTGTTTATTTCTTTGTTTTGTTTACATAAAACGTGAAGATTTGTGATTTTTTTGAGTTGAAAAGTCATAAATATCTTTTCAAATGGAAACTTTTACTTTCATTACTCACATTCTATTTAGTAGTACACTATTTTTGAGTACTTTAGCACAACTTTTGTCATTTCAACTCACCGGATGTATATAGTGATGTGGTGGCATGTTGAGACAATGCTCGTCATGAATCTCATCCTCTTGAATAATGCTTGGGAATAAAATAGTGGATACCGAGAAGACAATAAACACGACACAGAATATTAATAATAGTAAAAATAGGAATAAGCGGCCTATAATCCGCATGTTTCTTTTCTTATTGGTTGCCAAATCTTGACTTTGTATTGTTCATYTTCTGCCTAATTCTATATGAAAGAGAAACCAAAAAAAGCGGAAAAGAATTAACGAAACAGGAATAAAAAACTGTTATCTATCTCATACAGCAGTCGGTTTAGTCTGAGATTCCGGAAAAACAATAACTGTTCTTGTGTTCTTCGACGCAGGCGACGCATAATTGGGTCGCGCGCATATTTCAAGGACGGATTTCACCTACTTTTCACACATTATCTCTTACTTCAAATCATCATTGTGGTTTTTCAAATTTAGAATAGAACCATTCATGTAAAAAAAATTAATGGAAAACCTGTACATTTGTATTATCAGAGAGGATTAAAAATGATGACCAGGATAATAAGTGGGATGGATTCGGACGATGAGGGAAGAGAAAAGTGTTTCTAGATAAGCTAACCGGTTAAAATCGCAAATTTTTTAACTTTTTAAAACTTTGAGAATGATGTAAACAGTAAAAAAAATTATTACAGAAGTTTTACATTTTCCTCAGACAGATATGACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATGCTTGGGAATAAAATAGTG</pcr_primer_p1>
		<pcr_primer_p2>ACTAAACCGACTGCTGTATGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAATGCTTGGGAATAAAATAGTGGATACCGAGAAGACAATAAACACGACACAGAATATTAATAATAGTAAAAATAGGAATAAGCGGCCTATAATCCGCATGTTTCTTTTCTTATTGGTTGCCAAATCTTGACTTTGTATTGTTCATTTTCTGCCTAATTCTATATGAAAGAGAAACCAAAAAAAGCGGAAAAGAATTAACGAAACAGGAATAAAAAACTGTTATCTATCTCATACAGCAGTCGGTTTAGT</canonical_amplicon>
		<polymorphic_amplicon>TAATGCTTGGGAATAAAATAGTGGATACCGAGAAGACAATAAACACGACACAGAATATTAATAATAGTAAAAATAGGAATAAGCGGCCTATAATCCGCATGTTTCTTTTCTTATTGGTTGCCAAATCTTGACTTTGTATTGTTCATYTTCTGCCTAATTCTATATGAAAGAGAAACCAAAAAAAGCGGAAAAGAATTAACGAAACAGGAATAAAAAACTGTTATCTATCTCATACAGCAGTCGGTTTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15372</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>126877</contig_pos>
        <strand>+</strand>
        <context>CTGCGATTTG[A/G]TCTTATTCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTACGTCGAGTTGATTTCCTTTTGCGATTTGATCTTATTCTGCGATTTG</left_flank>
        <right_flank>TCTTATTCTGCGATTTGATCTCCTTCTGCTATCATTCACATTCTACCATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCACCTTTTGATATTCTCATCTCGGTAATCTTCCTTGCTAAGTTCTCATAGCACCACACAGACACACAGTTTGGCCTAGATCACAAGACAATCATTTGCCCTGTGGGGAATTTCAGAAAGAGTATGGATGGGAACACCTGATGACGTGGACTGGTACCCCGCGTTTCGCGTTCAACAGTATTGCGTCTGTTTTCTATTGATTTCCAATTAATAATCAATAACCATTTCAGTGATCTAGCTCATTTTCCCATTCTATGCTCATGCCTTTTTTTGTTGAAGAAGGTGGAAGGTTTTTGCCTAAAAACTAAGATATCTTTAGTTTCTTTCTTTATTTTGGCAATCTCAAAAATTGTAAGACAGCTTCTAATAACATTTCTAAAATTCTGATTATTTGTTCATCAATTGATTTTTTTGGCCGTCAGCGCCAAAATTGTACTTTGCTTTCTTTCTACGTCGAGTTGATTTCCTTTTGCGATTTGATCTTATTCTGCGATTTGGTCTTATTCTGCGATTTGATCTCCTTCTGCTATCATTCACATTCTACCATTTTATCATCTTTTCTCCCAATTTGGAAGCTACTGGTTGGTACCAAACTTCTTTTCCCTGCTACTAAGCTTATAAATAGACCTGCATGCATCCACCAGTTAACGGTATCGGTGATTTTTCTTTTAGTATCAATATTTTTTGACAAACTGAATTAGGTATGATAGAACTCGATAACCACAAAACAACACTGTTTAGAAAAATTATTTTGTTGGCGAACAAAGTTCCAGACCAAACGGGCTGAAAGAACCACCAGGGCCCGACCTGGCTGGATTGGGAGCTTACTGGTACGTAACTTTGTTGGCAAACGCTGTATCTTGTGGTACTCGTCAAGTTCTATCATATACATTTTAGTTGGTCAATTATTGCTCCTGGGAGAAGTTATCACAGCGCCCTCTAGGCCCGTTTTTGACACGTTTTCAAGTATGCTCCGAAAGTGTATGAGAAATTGTTTA</canonical>
            <polymorphic>AACCACCTTTTGATATTCTCATCTCGGTAATCTTCCTTGCTAAGTTCTCATAGCACCACACAGACACACAGTTTGGCCTAGATCACAAGACAATCATTTGCCCTGTGGGGAATTTCAGAAAGAGTATGGATGGGAACACCTGATGACGTGGACTGGTACCCCGCGTTTCGCGTTCAACAGTATTGCGTCTGTTTTCTATTGATTTCCAATTAATAATCAATAACCATTTCAGTGATCTAGCTCATTTTCCCATTCTATGCTCATGCCTTTTTTTGTTGAAGAAGGTGGAAGGTTTTTGCCTAAAAACTAAGATATCTTTAGTTTCTTTCTTTATTTTGGCAATCTCAAAAATTGTAAGACAGCTTCTAATAACATTTCTAAAATTCTGATTATTTGTTCATCAATTGATTTTTTTGGCCGTCAGCGCCAAAATTGTACTTTGCTTTCTTTCTACGTCGAGTTGATTTCCTTTTGCGATTTGATCTTATTCTGCGATTTGRTCTTATTCTGCGATTTGATCTCCTTCTGCTATCATTCACATTCTACCATTTTATCATCTTTTCTCCCAATTTGGAAGCTACTGGTTGGTACCAAACTTCTTTTCCCTGCTACTAAGCTTATAAATAGACCTGCATGCATCCACCAGTTAACGGTATCGGTGATTTTTCTTTTAGTATCAATATTTTTTGACAAACTGAATTAGGTATGATAGAACTCGATAACCACAAAACAACACTGTTTAGAAAAATTATTTTGTTGGCGAACAAAGTTCCAGACCAAACGGGCTGAAAGAACCACCAGGGCCCGACCTGGCTGGATTGGGAGCTTACTGGTACGTAACTTTGTTGGCAAACGCTGTATCTTGTGGTACTCGTCAAGTTCTATCATATACATTTTAGTTGGTCAATTATTGCTCCTGGGAGAAGTTATCACAGCGCCCTCTAGGCCCGTTTTTGACACGTTTTCAAGTATGCTCCGAAAGTGTATGAGAAATTGTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTTCTTTATTTTGGCAATC</pcr_primer_p1>
		<pcr_primer_p2>AAATTGGGAGAAAAGATGATAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTTTCTTTATTTTGGCAATCTCAAAAATTGTAAGACAGCTTCTAATAACATTTCTAAAATTCTGATTATTTGTTCATCAATTGATTTTTTTGGCCGTCAGCGCCAAAATTGTACTTTGCTTTCTTTCTACGTCGAGTTGATTTCCTTTTGCGATTTGATCTTATTCTGCGATTTGGTCTTATTCTGCGATTTGATCTCCTTCTGCTATCATTCACATTCTACCATTTTATCATCTTTTCTCCCAATTT</canonical_amplicon>
		<polymorphic_amplicon>TTCTTTCTTTATTTTGGCAATCTCAAAAATTGTAAGACAGCTTCTAATAACATTTCTAAAATTCTGATTATTTGTTCATCAATTGATTTTTTTGGCCGTCAGCGCCAAAATTGTACTTTGCTTTCTTTCTACGTCGAGTTGATTTCCTTTTGCGATTTGATCTTATTCTGCGATTTGRTCTTATTCTGCGATTTGATCTCCTTCTGCTATCATTCACATTCTACCATTTTATCATCTTTTCTCCCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15373</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>207106</contig_pos>
        <strand>+</strand>
        <context>AACGTTTTTC[A/C]CACTCACCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATGTTATCACTGTCCTCCTCTGTGTCGCACCGTCTTCTAACGTTTTTC</left_flank>
        <right_flank>CACTCACCAAAGTCCTTTTAGTGTTGTTGCCCGTTTTGTTGATTTGATAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATGCGAGACGTTACACCCAACTCAATCATTCCAGCGTCATTAACTCCAATAGTACATCTTGCCCCATACAACTTTCTTCTCAATTTCCCTCCCAAAAACACTCAATGTACCAATTGTCCATATACCATCTCATCAAATCCAATTTCCATCCGGCCCATCGCACATTTATGTAGTACAAAGTCTTCCCCTCTTCCTCCTATTCGCCTCGATTTCTCCGCCAAGGTGTGTGTGTGTGTGTTAAATGCAATAGGCCGTTAAGACGGTGTCTTCCCTATCCTTGCCGTCTCACACTTTGTGTCCCAATCGTCTTCTTCTTACTATAAGGTTGTTACAATAATAATAATATTCATACCATTTCATACACATGAGAAAACGCAACATTTTTCTCTCTTCTTATGATAAGGACGGTGGTGTGCGCAAACGTCTGCGTGTGTACGTACGACGAACAAATGTTATCACTGTCCTCCTCTGTGTCGCACCGTCTTCTAACGTTTTTCACACTCACCAAAGTCCTTTTAGTGTTGTTGCCCGTTTTGTTGATTTGATATGATTGGTCACTCAAGCCGAATAAACGATGGTTTTAGTAGATTAGCGTGGAATCTGCACTTAATCAGGTTTTTAATTAATTATTGGAAAAATTAGCATTTTTGCAAGAAAATGTTTTGAAATCAAACGGCGGCAAATTTATTGTAATTAAAGAAAACTGAAAAACTTGTGATAGAAAGCCCCTTTAAGTTTTAACTTTGAGCCAATTTATCTCCATTCCTTTCAAGAATATGAAAAAGTGGTTTACTAGTAAACTGTTTATCATAATATCAGAAGTGTTTTGTCCGTTGACACATTTTTGATACCTTGCATAGGAACTGATATAATTGAGCTGAAAGCGCACGTACAGTCTTTGCAGAGCTGATAGCGTATATCAAATTTAATGAAAATTAGAGCAAATACGGTATGAACATTTTTGAAACTTTTTTCCGCCATTTTCAATTCCATTTTTG</canonical>
            <polymorphic>CTATGCGAGACGTTACACCCAACTCAATCATTCCAGCGTCATTAACTCCAATAGTACATCTTGCCCCATACAACTTTCTTCTCAATTTCCCTCCCAAAAACACTCAATGTACCAATTGTCCATATACCATCTCATCAAATCCAATTTCCATCCGGCCCATCGCACATTTATGTAGTACAAAGTCTTCCCCTCTTCCTCCTATTCGCCTCGATTTCTCCGCCAAGGTGTGTGTGTGTGTGTTAAATGCAATAGGCCGTTAAGACGGTGTCTTCCCTATCCTTGCCGTCTCACACTTTGTGTCCCAATCGTCTTCTTCTTACTATAAGGTTGTTACAATAATAATAATATTCATACCATTTCATACACATGAGAAAACGCAACATTTTTCTCTCTTCTTATGATAAGGACGGTGGTGTGCGCAAACGTCTGCGTGTGTACGTACGACGAACAAATGTTATCACTGTCCTCCTCTGTGTCGCACCGTCTTCTAACGTTTTTCMCACTCACCAAAGTCCTTTTAGTGTTGTTGCCCGTTTTGTTGATTTGATATGATTGGTCACTCAAGCCGAATAAACGATGGTTTTAGTAGATTAGCGTGGAATCTGCACTTAATCAGGTTTTTAATTAATTATTGGAAAAATTAGCATTTTTGCAAGAAAATGTTTTGAAATCAAACGGCGGCAAATTTATTGTAATTAAAGAAAACTGAAAAACTTGTGATAGAAAGCCCCTTTAAGTTTTAACTTTGAGCCAATTTATCTCCATTCCTTTCAAGAATATGAAAAAGTGGTTTACTAGTAAACTGTTTATCATAATATCAGAAGTGTTTTGTCCGTTGACACATTTTTGATACCTTGCATAGGAACTGATATAATTGAGCTGAAAGCGCACGTACAGTCTTTGCAGAGCTGATAGCGTATATCAAATTTAATGAAAATTAGAGCAAATACGGTATGAACATTTTTGAAACTTTTTTCCGCCATTTTCAATTCCATTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>112 110 85 70 66 63 62 49 47 39 37 36 28 25 23 20 17 17 16 15 15 9 7 5 4 3 2 2 2 2 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>112 110 85 70 66 63 62 49 47 39 37 36 28 25 23 22 17 17 16 15 15 9 7 5 4 3 2 2 2 2 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATTTCATACACATGAGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GATTCCACGCTAATCTACTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCATTTCATACACATGAGAAAACGCAACATTTTTCTCTCTTCTTATGATAAGGACGGTGGTGTGCGCAAACGTCTGCGTGTGTACGTACGACGAACAAATGTTATCACTGTCCTCCTCTGTGTCGCACCGTCTTCTAACGTTTTTCACACTCACCAAAGTCCTTTTAGTGTTGTTGCCCGTTTTGTTGATTTGATATGATTGGTCACTCAAGCCGAATAAACGATGGTTTTAGTAGATTAGCGTGGAATC</canonical_amplicon>
		<polymorphic_amplicon>CCATTTCATACACATGAGAAAACGCAACATTTTTCTCTCTTCTTATGATAAGGACGGTGGTGTGCGCAAACGTCTGCGTGTGTACGTACGACGAACAAATGTTATCACTGTCCTCCTCTGTGTCGCACCGTCTTCTAACGTTTTTCMCACTCACCAAAGTCCTTTTAGTGTTGTTGCCCGTTTTGTTGATTTGATATGATTGGTCACTCAAGCCGAATAAACGATGGTTTTAGTAGATTAGCGTGGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15374</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>207174</contig_pos>
        <strand>+</strand>
        <context>CACTCAAGCC[A/G]AATAAACGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAGTGTTGTTGCCCGTTTTGTTGATTTGATATGATTGGTCACTCAAGCC</left_flank>
        <right_flank>AATAAACGATGGTTTTAGTAGATTAGCGTGGAATCTGCACTTAATCAGGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACAACTTTCTTCTCAATTTCCCTCCCAAAAACACTCAATGTACCAATTGTCCATATACCATCTCATCAAATCCAATTTCCATCCGGCCCATCGCACATTTATGTAGTACAAAGTCTTCCCCTCTTCCTCCTATTCGCCTCGATTTCTCCGCCAAGGTGTGTGTGTGTGTGTTAAATGCAATAGGCCGTTAAGACGGTGTCTTCCCTATCCTTGCCGTCTCACACTTTGTGTCCCAATCGTCTTCTTCTTACTATAAGGTTGTTACAATAATAATAATATTCATACCATTTCATACACATGAGAAAACGCAACATTTTTCTCTCTTCTTATGATAAGGACGGTGGTGTGCGCAAACGTCTGCGTGTGTACGTACGACGAACAAATGTTATCACTGTCCTCCTCTGTGTCGCACCGTCTTCTAACGTTTTTCACACTCACCAAAGTCCTTTTAGTGTTGTTGCCCGTTTTGTTGATTTGATATGATTGGTCACTCAAGCCGAATAAACGATGGTTTTAGTAGATTAGCGTGGAATCTGCACTTAATCAGGTTTTTAATTAATTATTGGAAAAATTAGCATTTTTGCAAGAAAATGTTTTGAAATCAAACGGCGGCAAATTTATTGTAATTAAAGAAAACTGAAAAACTTGTGATAGAAAGCCCCTTTAAGTTTTAACTTTGAGCCAATTTATCTCCATTCCTTTCAAGAATATGAAAAAGTGGTTTACTAGTAAACTGTTTATCATAATATCAGAAGTGTTTTGTCCGTTGACACATTTTTGATACCTTGCATAGGAACTGATATAATTGAGCTGAAAGCGCACGTACAGTCTTTGCAGAGCTGATAGCGTATATCAAATTTAATGAAAATTAGAGCAAATACGGTATGAACATTTTTGAAACTTTTTTCCGCCATTTTCAATTCCATTTTTGAACTCAACATCCTTTTGAAACATTCCCAAGTAGAAGTATAGCTTTTTGTTTCTCATTTTTTCTCACAC</canonical>
            <polymorphic>TACAACTTTCTTCTCAATTTCCCTCCCAAAAACACTCAATGTACCAATTGTCCATATACCATCTCATCAAATCCAATTTCCATCCGGCCCATCGCACATTTATGTAGTACAAAGTCTTCCCCTCTTCCTCCTATTCGCCTCGATTTCTCCGCCAAGGTGTGTGTGTGTGTGTTAAATGCAATAGGCCGTTAAGACGGTGTCTTCCCTATCCTTGCCGTCTCACACTTTGTGTCCCAATCGTCTTCTTCTTACTATAAGGTTGTTACAATAATAATAATATTCATACCATTTCATACACATGAGAAAACGCAACATTTTTCTCTCTTCTTATGATAAGGACGGTGGTGTGCGCAAACGTCTGCGTGTGTACGTACGACGAACAAATGTTATCACTGTCCTCCTCTGTGTCGCACCGTCTTCTAACGTTTTTCACACTCACCAAAGTCCTTTTAGTGTTGTTGCCCGTTTTGTTGATTTGATATGATTGGTCACTCAAGCCRAATAAACGATGGTTTTAGTAGATTAGCGTGGAATCTGCACTTAATCAGGTTTTTAATTAATTATTGGAAAAATTAGCATTTTTGCAAGAAAATGTTTTGAAATCAAACGGCGGCAAATTTATTGTAATTAAAGAAAACTGAAAAACTTGTGATAGAAAGCCCCTTTAAGTTTTAACTTTGAGCCAATTTATCTCCATTCCTTTCAAGAATATGAAAAAGTGGTTTACTAGTAAACTGTTTATCATAATATCAGAAGTGTTTTGTCCGTTGACACATTTTTGATACCTTGCATAGGAACTGATATAATTGAGCTGAAAGCGCACGTACAGTCTTTGCAGAGCTGATAGCGTATATCAAATTTAATGAAAATTAGAGCAAATACGGTATGAACATTTTTGAAACTTTTTTCCGCCATTTTCAATTCCATTTTTGAACTCAACATCCTTTTGAAACATTCCCAAGTAGAAGTATAGCTTTTTGTTTCTCATTTTTTCTCACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACATTTTTCTCTCTTCTTATGAT</pcr_primer_p1>
		<pcr_primer_p2>ATTAATTAAAAACCTGATTAAGTGC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAACATTTTTCTCTCTTCTTATGATAAGGACGGTGGTGTGCGCAAACGTCTGCGTGTGTACGTACGACGAACAAATGTTATCACTGTCCTCCTCTGTGTCGCACCGTCTTCTAACGTTTTTCACACTCACCAAAGTCCTTTTAGTGTTGTTGCCCGTTTTGTTGATTTGATATGATTGGTCACTCAAGCCGAATAAACGATGGTTTTAGTAGATTAGCGTGGAATCTGCACTTAATCAGGTTTTTAATTAAT</canonical_amplicon>
		<polymorphic_amplicon>CAACATTTTTCTCTCTTCTTATGATAAGGACGGTGGTGTGCGCAAACGTCTGCGTGTGTACGTACGACGAACAAATGTTATCACTGTCCTCCTCTGTGTCGCACCGTCTTCTAACGTTTTTCACACTCACCAAAGTCCTTTTAGTGTTGTTGCCCGTTTTGTTGATTTGATATGATTGGTCACTCAAGCCRAATAAACGATGGTTTTAGTAGATTAGCGTGGAATCTGCACTTAATCAGGTTTTTAATTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15375</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>207307</contig_pos>
        <strand>+</strand>
        <context>TGTAATTAAA[A/G]AAAactgaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCAAGAAAATGTTTTGAAATCAAACGGCGGCAAATTTATTGTAATTAAA</left_flank>
        <right_flank>AAAACTGAAAAACTTGTGATAGAAAGCCCCTTTAAGTTTTAACTTTGAGC</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGCCTCGATTTCTCCGCCAAGGTGTGTGTGTGTGTGTTAAATGCAATAGGCCGTTAAGACGGTGTCTTCCCTATCCTTGCCGTCTCACACTTTGTGTCCCAATCGTCTTCTTCTTACTATAAGGTTGTTACAATAATAATAATATTCATACCATTTCATACACATGAGAAAACGCAACATTTTTCTCTCTTCTTATGATAAGGACGGTGGTGTGCGCAAACGTCTGCGTGTGTACGTACGACGAACAAATGTTATCACTGTCCTCCTCTGTGTCGCACCGTCTTCTAACGTTTTTCACACTCACCAAAGTCCTTTTAGTGTTGTTGCCCGTTTTGTTGATTTGATATGATTGGTCACTCAAGCCGAATAAACGATGGTTTTAGTAGATTAGCGTGGAATCTGCACTTAATCAGGTTTTTAATTAATTATTGGAAAAATTAGCATTTTTGCAAGAAAATGTTTTGAAATCAAACGGCGGCAAATTTATTGTAATTAAAGAAAACTGAAAAACTTGTGATAGAAAGCCCCTTTAAGTTTTAACTTTGAGCCAATTTATCTCCATTCCTTTCAAGAATATGAAAAAGTGGTTTACTAGTAAACTGTTTATCATAATATCAGAAGTGTTTTGTCCGTTGACACATTTTTGATACCTTGCATAGGAACTGATATAATTGAGCTGAAAGCGCACGTACAGTCTTTGCAGAGCTGATAGCGTATATCAAATTTAATGAAAATTAGAGCAAATACGGTATGAACATTTTTGAAACTTTTTTCCGCCATTTTCAATTCCATTTTTGAACTCAACATCCTTTTGAAACATTCCCAAGTAGAAGTATAGCTTTTTGTTTCTCATTTTTTCTCACACATCCATCATTCCTCCAGCTCTTTTTTCTTCTTCTTTACTCTTTCCCATTTCAATGGCCATTCGAATGATCGTCTCACAAAAACCGTAGATATGTGAGGGTTCTTGCCATTCAGCTTCCTTTTTTTTATATCTA</canonical>
            <polymorphic>TTCGCCTCGATTTCTCCGCCAAGGTGTGTGTGTGTGTGTTAAATGCAATAGGCCGTTAAGACGGTGTCTTCCCTATCCTTGCCGTCTCACACTTTGTGTCCCAATCGTCTTCTTCTTACTATAAGGTTGTTACAATAATAATAATATTCATACCATTTCATACACATGAGAAAACGCAACATTTTTCTCTCTTCTTATGATAAGGACGGTGGTGTGCGCAAACGTCTGCGTGTGTACGTACGACGAACAAATGTTATCACTGTCCTCCTCTGTGTCGCACCGTCTTCTAACGTTTTTCACACTCACCAAAGTCCTTTTAGTGTTGTTGCCCGTTTTGTTGATTTGATATGATTGGTCACTCAAGCCGAATAAACGATGGTTTTAGTAGATTAGCGTGGAATCTGCACTTAATCAGGTTTTTAATTAATTATTGGAAAAATTAGCATTTTTGCAAGAAAATGTTTTGAAATCAAACGGCGGCAAATTTATTGTAATTAAARAAAACTGAAAAACTTGTGATAGAAAGCCCCTTTAAGTTTTAACTTTGAGCCAATTTATCTCCATTCCTTTCAAGAATATGAAAAAGTGGTTTACTAGTAAACTGTTTATCATAATATCAGAAGTGTTTTGTCCGTTGACACATTTTTGATACCTTGCATAGGAACTGATATAATTGAGCTGAAAGCGCACGTACAGTCTTTGCAGAGCTGATAGCGTATATCAAATTTAATGAAAATTAGAGCAAATACGGTATGAACATTTTTGAAACTTTTTTCCGCCATTTTCAATTCCATTTTTGAACTCAACATCCTTTTGAAACATTCCCAAGTAGAAGTATAGCTTTTTGTTTCTCATTTTTTCTCACACATCCATCATTCCTCCAGCTCTTTTTTCTTCTTCTTTACTCTTTCCCATTTCAATGGCCATTCGAATGATCGTCTCACAAAAACCGTAGATATGTGAGGGTTCTTGCCATTCAGCTTCCTTTTTTTTATATCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCAAGAAAATGTTTTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGCTCTGCAAAGACTGTACG</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>TGCAAGAAAATGTTTTGAAATCAAACGGCGGCAAATTTATTGTAATTAAAGAAAACTGAAAAACTTGTGATAGAAAGCCCCTTTAAGTTTTAACTTTGAGCCAATTTATCTCCATTCCTTTCAAGAATATGAAAAAGTGGTTTACTAGTAAACTGTTTATCATAATATCAGAAGTGTTTTGTCCGTTGACACATTTTTGATACCTTGCATAGGAACTGATATAATTGAGCTGAAAGCGCACGTACAGTCTTTGCAGAGCT</canonical_amplicon>
		<polymorphic_amplicon>TGCAAGAAAATGTTTTGAAATCAAACGGCGGCAAATTTATTGTAATTAAARAAAACTGAAAAACTTGTGATAGAAAGCCCCTTTAAGTTTTAACTTTGAGCCAATTTATCTCCATTCCTTTCAAGAATATGAAAAAGTGGTTTACTAGTAAACTGTTTATCATAATATCAGAAGTGTTTTGTCCGTTGACACATTTTTGATACCTTGCATAGGAACTGATATAATTGAGCTGAAAGCGCACGTACAGTCTTTGCAGAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15376</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>208599</contig_pos>
        <strand>+</strand>
        <context>CAAAGTCTCC[A/T]TAAAAACTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCC</left_flank>
        <right_flank>TAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAGCAAATTTCCAAAAACTTTCTATCTTCTGAAAAAAAGATTTTGTTCGGTAACAAGTTCATGGAACTTCTAGTTTCTACAAAGAACCTCCATACAATAGTTATACATTATAAATTGTCTTTTTTGTTCTGTCTGCATCTCTAATCCTCCAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTATGCGTGCTGTCGTCGTTCGCCCTTCCTGTGTCTGTCAATACGAATTCAATTGACTTCTTTGACAACGCTTCATTTAGTCCTGACATACTACGATTTCGACGTTTTTTGTTCGCACCTTTCTAGTTGTCTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCCGCTCGATACAAAAACATAATTTAGTCGATTTCTGCTATTTTGATCATTTTCAAGTTTCTGGAACTTGGCTGTCAAGTTTCCGATCATTTTAAAAATTGTCAAGAGTGTAAAACAGATCTTTTTCAGAATTTTCTGAGAATTGCTAGTTTTTCAGCTATACGCCGAATCCCAAAGGACACCTCTTTTTGGACTGTTATTGTACTGAAAATATTCAAAAAAAAAGTGTCTTTCAGAAATCGACAAATTGGTTAAAAAACAACGAATTTCACAAAAACTCTGTGAGTGCGAAGTTTCCAATCTAGGTCTGTTTAATAAAATCCGAACTTCTCAAAAATTTTGGGTACTAGACAGCCGACCTTCAGACTCCTCAAAATGGTCAAAATGACCAAGAATCAACTGAAAAAGGT</canonical>
            <polymorphic>TTTAGCAAATTTCCAAAAACTTTCTATCTTCTGAAAAAAAGATTTTGTTCGGTAACAAGTTCATGGAACTTCTAGTTTCTACAAAGAACCTCCATACAATAGTTATACATTATAAATTGTCTTTTTTGTTCTGTCTGCATCTCTAATCCTCCAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTATGCGTGCTGTCGTCGTTCGCCCTTCCTGTGTCTGTCAATACGAATTCAATTGACTTCTTTGACAACGCTTCATTTAGTCCTGACATACTACGATTTCGACGTTTTTTGTTCGCACCTTTCTAGTTGTCTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCWTAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCCGCTCGATACAAAAACATAATTTAGTCGATTTCTGCTATTTTGATCATTTTCAAGTTTCTGGAACTTGGCTGTCAAGTTTCCGATCATTTTAAAAATTGTCAAGAGTGTAAAACAGATCTTTTTCAGAATTTTCTGAGAATTGCTAGTTTTTCAGCTATACGCCGAATCCCAAAGGACACCTCTTTTTGGACTGTTATTGTACTGAAAATATTCAAAAAAAAAGTGTCTTTCAGAAATCGACAAATTGGTTAAAAAACAACGAATTTCACAAAAACTCTGTGAGTGCGAAGTTTCCAATCTAGGTCTGTTTAATAAAATCCGAACTTCTCAAAAATTTTGGGTACTAGACAGCCGACCTTCAGACTCCTCAAAATGGTCAAAATGACCAAGAATCAACTGAAAAAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGGGACCTATCATTTTCTAGTC</pcr_primer_p1>
		<pcr_primer_p2>GGCACTGTATATCTGAAAAATCA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCC</canonical_amplicon>
		<polymorphic_amplicon>CTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCWTAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15377</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>208578</contig_pos>
        <strand>+</strand>
        <context>CAAAAAATAA[G/T]TTGCGAAGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAA</left_flank>
        <right_flank>TTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAATAGGAGGGCTTTAATTTTTAGCAAATTTCCAAAAACTTTCTATCTTCTGAAAAAAAGATTTTGTTCGGTAACAAGTTCATGGAACTTCTAGTTTCTACAAAGAACCTCCATACAATAGTTATACATTATAAATTGTCTTTTTTGTTCTGTCTGCATCTCTAATCCTCCAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTATGCGTGCTGTCGTCGTTCGCCCTTCCTGTGTCTGTCAATACGAATTCAATTGACTTCTTTGACAACGCTTCATTTAGTCCTGACATACTACGATTTCGACGTTTTTTGTTCGCACCTTTCTAGTTGTCTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCCGCTCGATACAAAAACATAATTTAGTCGATTTCTGCTATTTTGATCATTTTCAAGTTTCTGGAACTTGGCTGTCAAGTTTCCGATCATTTTAAAAATTGTCAAGAGTGTAAAACAGATCTTTTTCAGAATTTTCTGAGAATTGCTAGTTTTTCAGCTATACGCCGAATCCCAAAGGACACCTCTTTTTGGACTGTTATTGTACTGAAAATATTCAAAAAAAAAGTGTCTTTCAGAAATCGACAAATTGGTTAAAAAACAACGAATTTCACAAAAACTCTGTGAGTGCGAAGTTTCCAATCTAGGTCTGTTTAATAAAATCCGAACTTCTCAAAAATTTTGGGTACTAGACAGCCGACCTTCAGACTCCTCAAAATGGTCAAAATGAC</canonical>
            <polymorphic>TCGAATAGGAGGGCTTTAATTTTTAGCAAATTTCCAAAAACTTTCTATCTTCTGAAAAAAAGATTTTGTTCGGTAACAAGTTCATGGAACTTCTAGTTTCTACAAAGAACCTCCATACAATAGTTATACATTATAAATTGTCTTTTTTGTTCTGTCTGCATCTCTAATCCTCCAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTATGCGTGCTGTCGTCGTTCGCCCTTCCTGTGTCTGTCAATACGAATTCAATTGACTTCTTTGACAACGCTTCATTTAGTCCTGACATACTACGATTTCGACGTTTTTTGTTCGCACCTTTCTAGTTGTCTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAAKTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCCGCTCGATACAAAAACATAATTTAGTCGATTTCTGCTATTTTGATCATTTTCAAGTTTCTGGAACTTGGCTGTCAAGTTTCCGATCATTTTAAAAATTGTCAAGAGTGTAAAACAGATCTTTTTCAGAATTTTCTGAGAATTGCTAGTTTTTCAGCTATACGCCGAATCCCAAAGGACACCTCTTTTTGGACTGTTATTGTACTGAAAATATTCAAAAAAAAAGTGTCTTTCAGAAATCGACAAATTGGTTAAAAAACAACGAATTTCACAAAAACTCTGTGAGTGCGAAGTTTCCAATCTAGGTCTGTTTAATAAAATCCGAACTTCTCAAAAATTTTGGGTACTAGACAGCCGACCTTCAGACTCCTCAAAATGGTCAAAATGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>171 107 105 76 71 64 56 55 55 54 38 38 33 19 17 14 11 11 5</canonical_bands>
                <polymorphic_bands>171 107 105 94 76 71 64 55 55 54 38 33 19 17 14 11 11 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGGGACCTATCATTTTCTAGTC</pcr_primer_p1>
		<pcr_primer_p2>GGCACTGTATATCTGAAAAATCA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCC</canonical_amplicon>
		<polymorphic_amplicon>CTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAAKTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15378</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>208550</contig_pos>
        <strand>+</strand>
        <context>TTTTTTTWRT[A/T]TTAAAACGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCT</left_flank>
        <right_flank>TTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCTAGCTTCAGGTGCGTTTCACGAAATTCGAATAGGAGGGCTTTAATTTTTAGCAAATTTCCAAAAACTTTCTATCTTCTGAAAAAAAGATTTTGTTCGGTAACAAGTTCATGGAACTTCTAGTTTCTACAAAGAACCTCCATACAATAGTTATACATTATAAATTGTCTTTTTTGTTCTGTCTGCATCTCTAATCCTCCAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTATGCGTGCTGTCGTCGTTCGCCCTTCCTGTGTCTGTCAATACGAATTCAATTGACTTCTTTGACAACGCTTCATTTAGTCCTGACATACTACGATTTCGACGTTTTTTGTTCGCACCTTTCTAGTTGTCTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCCGCTCGATACAAAAACATAATTTAGTCGATTTCTGCTATTTTGATCATTTTCAAGTTTCTGGAACTTGGCTGTCAAGTTTCCGATCATTTTAAAAATTGTCAAGAGTGTAAAACAGATCTTTTTCAGAATTTTCTGAGAATTGCTAGTTTTTCAGCTATACGCCGAATCCCAAAGGACACCTCTTTTTGGACTGTTATTGTACTGAAAATATTCAAAAAAAAAGTGTCTTTCAGAAATCGACAAATTGGTTAAAAAACAACGAATTTCACAAAAACTCTGTGAGTGCGAAGTTTCCAATCTAGGTCTGTTTAATAAAATCCGAACTTCTCAAAAATTTTGGGTACTAGACAGCCGACCT</canonical>
            <polymorphic>CCCTAGCTTCAGGTGCGTTTCACGAAATTCGAATAGGAGGGCTTTAATTTTTAGCAAATTTCCAAAAACTTTCTATCTTCTGAAAAAAAGATTTTGTTCGGTAACAAGTTCATGGAACTTCTAGTTTCTACAAAGAACCTCCATACAATAGTTATACATTATAAATTGTCTTTTTTGTTCTGTCTGCATCTCTAATCCTCCAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTATGCGTGCTGTCGTCGTTCGCCCTTCCTGTGTCTGTCAATACGAATTCAATTGACTTCTTTGACAACGCTTCATTTAGTCCTGACATACTACGATTTCGACGTTTTTTGTTCGCACCTTTCTAGTTGTCTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTWTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCCGCTCGATACAAAAACATAATTTAGTCGATTTCTGCTATTTTGATCATTTTCAAGTTTCTGGAACTTGGCTGTCAAGTTTCCGATCATTTTAAAAATTGTCAAGAGTGTAAAACAGATCTTTTTCAGAATTTTCTGAGAATTGCTAGTTTTTCAGCTATACGCCGAATCCCAAAGGACACCTCTTTTTGGACTGTTATTGTACTGAAAATATTCAAAAAAAAAGTGTCTTTCAGAAATCGACAAATTGGTTAAAAAACAACGAATTTCACAAAAACTCTGTGAGTGCGAAGTTTCCAATCTAGGTCTGTTTAATAAAATCCGAACTTCTCAAAAATTTTGGGTACTAGACAGCCGACCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 268 131 99</canonical_bands>
                <polymorphic_bands>601 268 131</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGGGACCTATCATTTTCTAGTC</pcr_primer_p1>
		<pcr_primer_p2>GGCACTGTATATCTGAAAAATCA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCC</canonical_amplicon>
		<polymorphic_amplicon>CTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTWTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15385</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>208533</contig_pos>
        <strand>+</strand>
        <context>TTTTTCTTTC[A/T]AAAAAATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTC</left_flank>
        <right_flank>AAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTGATAAGTTTCTCACCCTAGCTTCAGGTGCGTTTCACGAAATTCGAATAGGAGGGCTTTAATTTTTAGCAAATTTCCAAAAACTTTCTATCTTCTGAAAAAAAGATTTTGTTCGGTAACAAGTTCATGGAACTTCTAGTTTCTACAAAGAACCTCCATACAATAGTTATACATTATAAATTGTCTTTTTTGTTCTGTCTGCATCTCTAATCCTCCAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTATGCGTGCTGTCGTCGTTCGCCCTTCCTGTGTCTGTCAATACGAATTCAATTGACTTCTTTGACAACGCTTCATTTAGTCCTGACATACTACGATTTCGACGTTTTTTGTTCGCACCTTTCTAGTTGTCTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCCGCTCGATACAAAAACATAATTTAGTCGATTTCTGCTATTTTGATCATTTTCAAGTTTCTGGAACTTGGCTGTCAAGTTTCCGATCATTTTAAAAATTGTCAAGAGTGTAAAACAGATCTTTTTCAGAATTTTCTGAGAATTGCTAGTTTTTCAGCTATACGCCGAATCCCAAAGGACACCTCTTTTTGGACTGTTATTGTACTGAAAATATTCAAAAAAAAAGTGTCTTTCAGAAATCGACAAATTGGTTAAAAAACAACGAATTTCACAAAAACTCTGTGAGTGCGAAGTTTCCAATCTAGGTCTGTTTAATAAAATCCGAACTTCTCAAAAATTTTGGG</canonical>
            <polymorphic>TGGTGATAAGTTTCTCACCCTAGCTTCAGGTGCGTTTCACGAAATTCGAATAGGAGGGCTTTAATTTTTAGCAAATTTCCAAAAACTTTCTATCTTCTGAAAAAAAGATTTTGTTCGGTAACAAGTTCATGGAACTTCTAGTTTCTACAAAGAACCTCCATACAATAGTTATACATTATAAATTGTCTTTTTTGTTCTGTCTGCATCTCTAATCCTCCAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTATGCGTGCTGTCGTCGTTCGCCCTTCCTGTGTCTGTCAATACGAATTCAATTGACTTCTTTGACAACGCTTCATTTAGTCCTGACATACTACGATTTCGACGTTTTTTGTTCGCACCTTTCTAGTTGTCTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCWAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCCGCTCGATACAAAAACATAATTTAGTCGATTTCTGCTATTTTGATCATTTTCAAGTTTCTGGAACTTGGCTGTCAAGTTTCCGATCATTTTAAAAATTGTCAAGAGTGTAAAACAGATCTTTTTCAGAATTTTCTGAGAATTGCTAGTTTTTCAGCTATACGCCGAATCCCAAAGGACACCTCTTTTTGGACTGTTATTGTACTGAAAATATTCAAAAAAAAAGTGTCTTTCAGAAATCGACAAATTGGTTAAAAAACAACGAATTTCACAAAAACTCTGTGAGTGCGAAGTTTCCAATCTAGGTCTGTTTAATAAAATCCGAACTTCTCAAAAATTTTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGGGACCTATCATTTTCTAGTC</pcr_primer_p1>
		<pcr_primer_p2>GGCACTGTATATCTGAAAAATCA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCC</canonical_amplicon>
		<polymorphic_amplicon>CTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCWAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15386</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>208354</contig_pos>
        <strand>+</strand>
        <context>CCTGTGTCTG[C/T]CAATACGAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTAATTGTGCATTTATGCGTGCTGTCGTCGTTCGCCCTTCCTGTGTCTG</left_flank>
        <right_flank>CAATACGAATTCAATTGACTTCTTTGACAACGCTTCATTTAGTCCTGACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTTCCGTTTGTTTTTTATTGCCTTCCTCGCCCCCCTTGGCTTCCAGAATCCAGTTTATCAATTTATCGCCTGCTGCTGCAGTCATTCGTTTTCGAATGACATTTTAATTCATTCGAAAACCTTTTTTCCCGCATCACGGCTAGCGTTTTATCAACACAGCTTATCGGTGGGGATGGTGGTGATAAGTTTCTCACCCTAGCTTCAGGTGCGTTTCACGAAATTCGAATAGGAGGGCTTTAATTTTTAGCAAATTTCCAAAAACTTTCTATCTTCTGAAAAAAAGATTTTGTTCGGTAACAAGTTCATGGAACTTCTAGTTTCTACAAAGAACCTCCATACAATAGTTATACATTATAAATTGTCTTTTTTGTTCTGTCTGCATCTCTAATCCTCCAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTATGCGTGCTGTCGTCGTTCGCCCTTCCTGTGTCTGTCAATACGAATTCAATTGACTTCTTTGACAACGCTTCATTTAGTCCTGACATACTACGATTTCGACGTTTTTTGTTCGCACCTTTCTAGTTGTCTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCCGCTCGATACAAAAACATAATTTAGTCGATTTCTGCTATTTTGATCATTTTCAAGTTTCTGGAACTTGGCTGTCAAGTTTCCGATCATTTTAAAAATTGTCAAGAGTGTAAAACAGATCTTTTTCAGAATTTTCTGAGAATTGCTAGTTTTTCAGCTATACGC</canonical>
            <polymorphic>TTCTTTCCGTTTGTTTTTTATTGCCTTCCTCGCCCCCCTTGGCTTCCAGAATCCAGTTTATCAATTTATCGCCTGCTGCTGCAGTCATTCGTTTTCGAATGACATTTTAATTCATTCGAAAACCTTTTTTCCCGCATCACGGCTAGCGTTTTATCAACACAGCTTATCGGTGGGGATGGTGGTGATAAGTTTCTCACCCTAGCTTCAGGTGCGTTTCACGAAATTCGAATAGGAGGGCTTTAATTTTTAGCAAATTTCCAAAAACTTTCTATCTTCTGAAAAAAAGATTTTGTTCGGTAACAAGTTCATGGAACTTCTAGTTTCTACAAAGAACCTCCATACAATAGTTATACATTATAAATTGTCTTTTTTGTTCTGTCTGCATCTCTAATCCTCCAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTATGCGTGCTGTCGTCGTTCGCCCTTCCTGTGTCTGYCAATACGAATTCAATTGACTTCTTTGACAACGCTTCATTTAGTCCTGACATACTACGATTTCGACGTTTTTTGTTCGCACCTTTCTAGTTGTCTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCCGCTCGATACAAAAACATAATTTAGTCGATTTCTGCTATTTTGATCATTTTCAAGTTTCTGGAACTTGGCTGTCAAGTTTCCGATCATTTTAAAAATTGTCAAGAGTGTAAAACAGATCTTTTTCAGAATTTTCTGAGAATTGCTAGTTTTTCAGCTATACGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTTCTGTCTGCATCTCTAATC</pcr_primer_p1>
		<pcr_primer_p2>GGTTCGACTAGAAAATGATAGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGTTCTGTCTGCATCTCTAATCCTCCAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTATGCGTGCTGTCGTCGTTCGCCCTTCCTGTGTCTGTCAATACGAATTCAATTGACTTCTTTGACAACGCTTCATTTAGTCCTGACATACTACGATTTCGACGTTTTTTGTTCGCACCTTTCTAGTTGTCTGGGACCTATCATTTTCTAGTCGAACC</canonical_amplicon>
		<polymorphic_amplicon>TTGTTCTGTCTGCATCTCTAATCCTCCAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTATGCGTGCTGTCGTCGTTCGCCCTTCCTGTGTCTGYCAATACGAATTCAATTGACTTCTTTGACAACGCTTCATTTAGTCCTGACATACTACGATTTCGACGTTTTTTGTTCGCACCTTTCTAGTTGTCTGGGACCTATCATTTTCTAGTCGAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15387</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>208328</contig_pos>
        <strand>+</strand>
        <context>TATGCGTGCT[A/G]TCGTCGTTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTATGCGTGCT</left_flank>
        <right_flank>TCGTCGTTCGCCCTTCCTGTGTCTGTCAATACGAATTCAATTGACTTCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCATACTTCTCTTCACACATCATTCTTCTTTCCGTTTGTTTTTTATTGCCTTCCTCGCCCCCCTTGGCTTCCAGAATCCAGTTTATCAATTTATCGCCTGCTGCTGCAGTCATTCGTTTTCGAATGACATTTTAATTCATTCGAAAACCTTTTTTCCCGCATCACGGCTAGCGTTTTATCAACACAGCTTATCGGTGGGGATGGTGGTGATAAGTTTCTCACCCTAGCTTCAGGTGCGTTTCACGAAATTCGAATAGGAGGGCTTTAATTTTTAGCAAATTTCCAAAAACTTTCTATCTTCTGAAAAAAAGATTTTGTTCGGTAACAAGTTCATGGAACTTCTAGTTTCTACAAAGAACCTCCATACAATAGTTATACATTATAAATTGTCTTTTTTGTTCTGTCTGCATCTCTAATCCTCCAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTATGCGTGCTGTCGTCGTTCGCCCTTCCTGTGTCTGTCAATACGAATTCAATTGACTTCTTTGACAACGCTTCATTTAGTCCTGACATACTACGATTTCGACGTTTTTTGTTCGCACCTTTCTAGTTGTCTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCCGCTCGATACAAAAACATAATTTAGTCGATTTCTGCTATTTTGATCATTTTCAAGTTTCTGGAACTTGGCTGTCAAGTTTCCGATCATTTTAAAAATTGTCAAGAGTGTAAAACAGATCTTTTTCAGAATTTTCTGA</canonical>
            <polymorphic>GTCATACTTCTCTTCACACATCATTCTTCTTTCCGTTTGTTTTTTATTGCCTTCCTCGCCCCCCTTGGCTTCCAGAATCCAGTTTATCAATTTATCGCCTGCTGCTGCAGTCATTCGTTTTCGAATGACATTTTAATTCATTCGAAAACCTTTTTTCCCGCATCACGGCTAGCGTTTTATCAACACAGCTTATCGGTGGGGATGGTGGTGATAAGTTTCTCACCCTAGCTTCAGGTGCGTTTCACGAAATTCGAATAGGAGGGCTTTAATTTTTAGCAAATTTCCAAAAACTTTCTATCTTCTGAAAAAAAGATTTTGTTCGGTAACAAGTTCATGGAACTTCTAGTTTCTACAAAGAACCTCCATACAATAGTTATACATTATAAATTGTCTTTTTTGTTCTGTCTGCATCTCTAATCCTCCAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTATGCGTGCTRTCGTCGTTCGCCCTTCCTGTGTCTGTCAATACGAATTCAATTGACTTCTTTGACAACGCTTCATTTAGTCCTGACATACTACGATTTCGACGTTTTTTGTTCGCACCTTTCTAGTTGTCTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCCGCTCGATACAAAAACATAATTTAGTCGATTTCTGCTATTTTGATCATTTTCAAGTTTCTGGAACTTGGCTGTCAAGTTTCCGATCATTTTAAAAATTGTCAAGAGTGTAAAACAGATCTTTTTCAGAATTTTCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTTCTGTCTGCATCTCTAATC</pcr_primer_p1>
		<pcr_primer_p2>GGTTCGACTAGAAAATGATAGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGTTCTGTCTGCATCTCTAATCCTCCAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTATGCGTGCTGTCGTCGTTCGCCCTTCCTGTGTCTGTCAATACGAATTCAATTGACTTCTTTGACAACGCTTCATTTAGTCCTGACATACTACGATTTCGACGTTTTTTGTTCGCACCTTTCTAGTTGTCTGGGACCTATCATTTTCTAGTCGAACC</canonical_amplicon>
		<polymorphic_amplicon>TTGTTCTGTCTGCATCTCTAATCCTCCAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTATGCGTGCTRTCGTCGTTCGCCCTTCCTGTGTCTGTCAATACGAATTCAATTGACTTCTTTGACAACGCTTCATTTAGTCCTGACATACTACGATTTCGACGTTTTTTGTTCGCACCTTTCTAGTTGTCTGGGACCTATCATTTTCTAGTCGAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15388</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>208250</contig_pos>
        <strand>+</strand>
        <context>CTCTAATCCT[C/T]CAATTCCTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTTATACATTATAAATTGTCTTTTTTGTTCTGTCTGCATCTCTAATCCT</left_flank>
        <right_flank>CAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAACCGTAGATATGTGAGGGTTCTTGCCATTCAGCTTCCTTTTTTTTATATCTATGTATTTTTTGCAATCCATTCGTCATACTTCTCTTCACACATCATTCTTCTTTCCGTTTGTTTTTTATTGCCTTCCTCGCCCCCCTTGGCTTCCAGAATCCAGTTTATCAATTTATCGCCTGCTGCTGCAGTCATTCGTTTTCGAATGACATTTTAATTCATTCGAAAACCTTTTTTCCCGCATCACGGCTAGCGTTTTATCAACACAGCTTATCGGTGGGGATGGTGGTGATAAGTTTCTCACCCTAGCTTCAGGTGCGTTTCACGAAATTCGAATAGGAGGGCTTTAATTTTTAGCAAATTTCCAAAAACTTTCTATCTTCTGAAAAAAAGATTTTGTTCGGTAACAAGTTCATGGAACTTCTAGTTTCTACAAAGAACCTCCATACAATAGTTATACATTATAAATTGTCTTTTTTGTTCTGTCTGCATCTCTAATCCTCCAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTATGCGTGCTGTCGTCGTTCGCCCTTCCTGTGTCTGTCAATACGAATTCAATTGACTTCTTTGACAACGCTTCATTTAGTCCTGACATACTACGATTTCGACGTTTTTTGTTCGCACCTTTCTAGTTGTCTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCCGCTCGATACAAAAACATAATTTAGTCGATTTCTGCTATTTTGATCATTTTCAAGTTTC</canonical>
            <polymorphic>CAAAAACCGTAGATATGTGAGGGTTCTTGCCATTCAGCTTCCTTTTTTTTATATCTATGTATTTTTTGCAATCCATTCGTCATACTTCTCTTCACACATCATTCTTCTTTCCGTTTGTTTTTTATTGCCTTCCTCGCCCCCCTTGGCTTCCAGAATCCAGTTTATCAATTTATCGCCTGCTGCTGCAGTCATTCGTTTTCGAATGACATTTTAATTCATTCGAAAACCTTTTTTCCCGCATCACGGCTAGCGTTTTATCAACACAGCTTATCGGTGGGGATGGTGGTGATAAGTTTCTCACCCTAGCTTCAGGTGCGTTTCACGAAATTCGAATAGGAGGGCTTTAATTTTTAGCAAATTTCCAAAAACTTTCTATCTTCTGAAAAAAAGATTTTGTTCGGTAACAAGTTCATGGAACTTCTAGTTTCTACAAAGAACCTCCATACAATAGTTATACATTATAAATTGTCTTTTTTGTTCTGTCTGCATCTCTAATCCTYCAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTATGCGTGCTGTCGTCGTTCGCCCTTCCTGTGTCTGTCAATACGAATTCAATTGACTTCTTTGACAACGCTTCATTTAGTCCTGACATACTACGATTTCGACGTTTTTTGTTCGCACCTTTCTAGTTGTCTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCCGCTCGATACAAAAACATAATTTAGTCGATTTCTGCTATTTTGATCATTTTCAAGTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATAGGAGGGCTTTAATTTTTA</pcr_primer_p1>
		<pcr_primer_p2>ATAAATGCACAATTAGGCTACTG</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GAATAGGAGGGCTTTAATTTTTAGCAAATTTCCAAAAACTTTCTATCTTCTGAAAAAAAGATTTTGTTCGGTAACAAGTTCATGGAACTTCTAGTTTCTACAAAGAACCTCCATACAATAGTTATACATTATAAATTGTCTTTTTTGTTCTGTCTGCATCTCTAATCCTCCAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTAT</canonical_amplicon>
		<polymorphic_amplicon>GAATAGGAGGGCTTTAATTTTTAGCAAATTTCCAAAAACTTTCTATCTTCTGAAAAAAAGATTTTGTTCGGTAACAAGTTCATGGAACTTCTAGTTTCTACAAAGAACCTCCATACAATAGTTATACATTATAAATTGTCTTTTTTGTTCTGTCTGCATCTCTAATCCTYCAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15389</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>208185</contig_pos>
        <strand>+</strand>
        <context>TTTCTACAAA[A/G]AACCTCCATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAGATTTTGTTCGGTAACAAGTTCATGGAACTTCTAGTTTCTACAAA</left_flank>
        <right_flank>AACCTCCATACAATAGTTATACATTATAAATTGTCTTTTTTGTTCTGTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCAGCTCTTTTTTCTTCTTCTTTACTCTTTCCCATTTCAATGGCCATTCGAATGATCGTCTCACAAAAACCGTAGATATGTGAGGGTTCTTGCCATTCAGCTTCCTTTTTTTTATATCTATGTATTTTTTGCAATCCATTCGTCATACTTCTCTTCACACATCATTCTTCTTTCCGTTTGTTTTTTATTGCCTTCCTCGCCCCCCTTGGCTTCCAGAATCCAGTTTATCAATTTATCGCCTGCTGCTGCAGTCATTCGTTTTCGAATGACATTTTAATTCATTCGAAAACCTTTTTTCCCGCATCACGGCTAGCGTTTTATCAACACAGCTTATCGGTGGGGATGGTGGTGATAAGTTTCTCACCCTAGCTTCAGGTGCGTTTCACGAAATTCGAATAGGAGGGCTTTAATTTTTAGCAAATTTCCAAAAACTTTCTATCTTCTGAAAAAAAGATTTTGTTCGGTAACAAGTTCATGGAACTTCTAGTTTCTACAAAGAACCTCCATACAATAGTTATACATTATAAATTGTCTTTTTTGTTCTGTCTGCATCTCTAATCCTCCAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTATGCGTGCTGTCGTCGTTCGCCCTTCCTGTGTCTGTCAATACGAATTCAATTGACTTCTTTGACAACGCTTCATTTAGTCCTGACATACTACGATTTCGACGTTTTTTGTTCGCACCTTTCTAGTTGTCTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATA</canonical>
            <polymorphic>CTCCAGCTCTTTTTTCTTCTTCTTTACTCTTTCCCATTTCAATGGCCATTCGAATGATCGTCTCACAAAAACCGTAGATATGTGAGGGTTCTTGCCATTCAGCTTCCTTTTTTTTATATCTATGTATTTTTTGCAATCCATTCGTCATACTTCTCTTCACACATCATTCTTCTTTCCGTTTGTTTTTTATTGCCTTCCTCGCCCCCCTTGGCTTCCAGAATCCAGTTTATCAATTTATCGCCTGCTGCTGCAGTCATTCGTTTTCGAATGACATTTTAATTCATTCGAAAACCTTTTTTCCCGCATCACGGCTAGCGTTTTATCAACACAGCTTATCGGTGGGGATGGTGGTGATAAGTTTCTCACCCTAGCTTCAGGTGCGTTTCACGAAATTCGAATAGGAGGGCTTTAATTTTTAGCAAATTTCCAAAAACTTTCTATCTTCTGAAAAAAAGATTTTGTTCGGTAACAAGTTCATGGAACTTCTAGTTTCTACAAARAACCTCCATACAATAGTTATACATTATAAATTGTCTTTTTTGTTCTGTCTGCATCTCTAATCCTCCAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTATGCGTGCTGTCGTCGTTCGCCCTTCCTGTGTCTGTCAATACGAATTCAATTGACTTCTTTGACAACGCTTCATTTAGTCCTGACATACTACGATTTCGACGTTTTTTGTTCGCACCTTTCTAGTTGTCTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATAGGAGGGCTTTAATTTTTA</pcr_primer_p1>
		<pcr_primer_p2>ATAAATGCACAATTAGGCTACTG</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GAATAGGAGGGCTTTAATTTTTAGCAAATTTCCAAAAACTTTCTATCTTCTGAAAAAAAGATTTTGTTCGGTAACAAGTTCATGGAACTTCTAGTTTCTACAAAGAACCTCCATACAATAGTTATACATTATAAATTGTCTTTTTTGTTCTGTCTGCATCTCTAATCCTCCAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTAT</canonical_amplicon>
		<polymorphic_amplicon>GAATAGGAGGGCTTTAATTTTTAGCAAATTTCCAAAAACTTTCTATCTTCTGAAAAAAAGATTTTGTTCGGTAACAAGTTCATGGAACTTCTAGTTTCTACAAARAACCTCCATACAATAGTTATACATTATAAATTGTCTTTTTTGTTCTGTCTGCATCTCTAATCCTCCAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15390</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>220333</contig_pos>
        <strand>+</strand>
        <context>ATTGTTTCGC[A/G]ATTAAAACTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTCCTGCCAACCTAATAGTTTTGTGCGGCTCTGAAAATATTGTTTCGC</left_flank>
        <right_flank>ATTAAAACTACAAAATTACAACTTTCGCCACCTCATAAATAGCTCAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTTTGAATAACCAATAGTCTGATAGAGCTGAATCAAGTCTTTAACGGGGGTAAAGGAGAACCGTCCAGCCAAAGCGGCTCAGATACGGCGTGACTTTCAGTGAACATGAGGTTTTTTCATTTTTTACCTGCAGTCAAGTCAGACCTGAGCAGCTTCAGTGGGACCGTTCTCCCTCATCTACTTATAGTCCCGACTGAGCTCTATCAGATTATTGGATATTCGGAGAGATACAACCTCATCTAGTGAACACGAAAATTTGCACCATTTGTGTGAAAAACAGGAAAAAAAATGAATACTTTGATTCGTGGCTAGCTGGCTTCTGGAGGGATGGTACCCACAAGTTACCTGAACATTGCCACAACATGTCGTGGACCACGACGGTGCATACTGCTAATCTTGGATTAATCCTGCTTTTGTATTATTCACAAACAAAACAAGGGACAGTTACTTTCCTGCCAACCTAATAGTTTTGTGCGGCTCTGAAAATATTGTTTCGCAATTAAAACTACAAAATTACAACTTTCGCCACCTCATAAATAGCTCAAAAATCCCGTAAGCGAGATTATTGAGGTCAAATTGCACGTATAGAGTGGGCTTCTATTAGAGCTTCATTAGCTCTAATGTTTTGCATTGAAGCTATTTTCTTTGTTCCACCCCAAACTGCAAAACCTTGGATTCAGTGACGTAGATATTTCCATTCAATAGAATTCTAACTTTCTGATTTTTTTTTTAATTCTGCTATTCTTTCCGATTTTCAATTCTTGACCTTTGTAATCTTTACAGATTTCAAAGTTCTCTACCATTTTCTTTTTCTGTTTTTAAAGTTTTTGCAACATGTTTTCCTAGACATTATCACTCACTTTGAGTACCTAACAACCCCTATCCATTTTCCCACTTCGCGGCTCCATGCAACTTTTGATACATTTTCCACAGCAGTTTTTGTTCCTCACTTCACCTTTTATTTCTTTTTCTACTTCTCAACACAAAACAAAAAAACC</canonical>
            <polymorphic>ACTTTTGAATAACCAATAGTCTGATAGAGCTGAATCAAGTCTTTAACGGGGGTAAAGGAGAACCGTCCAGCCAAAGCGGCTCAGATACGGCGTGACTTTCAGTGAACATGAGGTTTTTTCATTTTTTACCTGCAGTCAAGTCAGACCTGAGCAGCTTCAGTGGGACCGTTCTCCCTCATCTACTTATAGTCCCGACTGAGCTCTATCAGATTATTGGATATTCGGAGAGATACAACCTCATCTAGTGAACACGAAAATTTGCACCATTTGTGTGAAAAACAGGAAAAAAAATGAATACTTTGATTCGTGGCTAGCTGGCTTCTGGAGGGATGGTACCCACAAGTTACCTGAACATTGCCACAACATGTCGTGGACCACGACGGTGCATACTGCTAATCTTGGATTAATCCTGCTTTTGTATTATTCACAAACAAAACAAGGGACAGTTACTTTCCTGCCAACCTAATAGTTTTGTGCGGCTCTGAAAATATTGTTTCGCRATTAAAACTACAAAATTACAACTTTCGCCACCTCATAAATAGCTCAAAAATCCCGTAAGCGAGATTATTGAGGTCAAATTGCACGTATAGAGTGGGCTTCTATTAGAGCTTCATTAGCTCTAATGTTTTGCATTGAAGCTATTTTCTTTGTTCCACCCCAAACTGCAAAACCTTGGATTCAGTGACGTAGATATTTCCATTCAATAGAATTCTAACTTTCTGATTTTTTTTTTAATTCTGCTATTCTTTCCGATTTTCAATTCTTGACCTTTGTAATCTTTACAGATTTCAAAGTTCTCTACCATTTTCTTTTTCTGTTTTTAAAGTTTTTGCAACATGTTTTCCTAGACATTATCACTCACTTTGAGTACCTAACAACCCCTATCCATTTTCCCACTTCGCGGCTCCATGCAACTTTTGATACATTTTCCACAGCAGTTTTTGTTCCTCACTTCACCTTTTATTTCTTTTTCTACTTCTCAACACAAAACAAAAAAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>255 244 242 131 63 26 25 14</canonical_bands>
                <polymorphic_bands>258 255 242 131 63 26 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTTGACACCATCGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>GGGATTTTTGAGCTATTTATGAG</pcr_primer_p2>
		<pcr_amplicon_size>813</pcr_amplicon_size>
		<canonical_amplicon>CAATTAAAACTACAAAATTACAACTTTCGCCACCTCATAAATAGCTCAAAAATCCC</canonical_amplicon>
		<polymorphic_amplicon>CRATTAAAACTACAAAATTACAACTTTCGCCACCTCATAAATAGCTCAAAAATCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15391</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>233883</contig_pos>
        <strand>+</strand>
        <context>GGAATACGGT[A/C]AATGtatttt</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGATTCCACCAAGCACTTCAGTTGATAGAGAAGAGTGAGTGGAATACGGT</left_flank>
        <right_flank>AATGTATTTTTCAGTGGATGTTTTGTCTTGAGCTCTTTGAGTCTGGAGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACAAAAAATGGAGCAGCAACTTAGAGAGCAGTTGAGCAGCTGGCACAGTTCGTTCGGACCAAGTCAACCAGTGAGAGGGAAAACTGTATAAAATAATTTTGAATTGTGATAATTTCAGAGAGCTCCAGTGCCACTCTCAGCCGAATTGCAACTCGAAAACTTGGTAATAACTATCAAAAAGTTCATAAATCTGCATTAAAAAATTTTTAAGGGTTCCCCACCAGCTCCACCAGCCTCGATTGCTCAGTCTCCACCAGAAGTTTTGGAGACTACAGCCGAGCCACCAGCGTTCCAAGTGGCTTCCCACGAACGCAAGCTTGCTGAGGAGCGCGAGGACATTGTTGAGCAACAAATGATGCCAGTACCACCACCAACTAAAATCAGCAGCTCTCTCAGAAATCATATTCGCTATTCGCCAACACCTGTCGTCACTGAAGCCACTCCAGTGATTCCACCAAGCACTTCAGTTGATAGAGAAGAGTGAGTGGAATACGGTCAATGTATTTTTCAGTGGATGTTTTGTCTTGAGCTCTTTGAGTCTGGAGCTCTTTAAAATTTTCGATGGGTGTAAAACAGACCTAGATTGAAAACCTTGCATTCACAGAATTTTTTGAAGATTCATTCCATTTTCGATTGCTGAAAGACACCCATTTCTGGTTTTTTCCGTTCTAGGTCTGTTTTACGTCATCCAAAATTATCAAAGGGAACGGGACCTTGATAGTCTTGCTTCTGACTCTTGAAAATGGTTAAAATGACTAAAAATCTGCTGAAAAATACTTACATATATATATTTTTTTGATAGAATGTCAAATAGATTCAAACTTTCAGTGATGAATTCGTATCAAAATGCAATTGTGAGAAAATCTCTCTAGACAAAATGAATGGAAAATGGCTCATGGCTCTTGCCTCACCAAATGTTGTTGAGATGGTTCAACACAAGGCCAACGAACTTTTGGACAAATCTGAAACCCTATCTTGCTCTCGATTCGATGTCTCC</canonical>
            <polymorphic>AAAACAAAAAATGGAGCAGCAACTTAGAGAGCAGTTGAGCAGCTGGCACAGTTCGTTCGGACCAAGTCAACCAGTGAGAGGGAAAACTGTATAAAATAATTTTGAATTGTGATAATTTCAGAGAGCTCCAGTGCCACTCTCAGCCGAATTGCAACTCGAAAACTTGGTAATAACTATCAAAAAGTTCATAAATCTGCATTAAAAAATTTTTAAGGGTTCCCCACCAGCTCCACCAGCCTCGATTGCTCAGTCTCCACCAGAAGTTTTGGAGACTACAGCCGAGCCACCAGCGTTCCAAGTGGCTTCCCACGAACGCAAGCTTGCTGAGGAGCGCGAGGACATTGTTGAGCAACAAATGATGCCAGTACCACCACCAACTAAAATCAGCAGCTCTCTCAGAAATCATATTCGCTATTCGCCAACACCTGTCGTCACTGAAGCCACTCCAGTGATTCCACCAAGCACTTCAGTTGATAGAGAAGAGTGAGTGGAATACGGTMAATGTATTTTTCAGTGGATGTTTTGTCTTGAGCTCTTTGAGTCTGGAGCTCTTTAAAATTTTCGATGGGTGTAAAACAGACCTAGATTGAAAACCTTGCATTCACAGAATTTTTTGAAGATTCATTCCATTTTCGATTGCTGAAAGACACCCATTTCTGGTTTTTTCCGTTCTAGGTCTGTTTTACGTCATCCAAAATTATCAAAGGGAACGGGACCTTGATAGTCTTGCTTCTGACTCTTGAAAATGGTTAAAATGACTAAAAATCTGCTGAAAAATACTTACATATATATATTTTTTTGATAGAATGTCAAATAGATTCAAACTTTCAGTGATGAATTCGTATCAAAATGCAATTGTGAGAAAATCTCTCTAGACAAAATGAATGGAAAATGGCTCATGGCTCTTGCCTCACCAAATGTTGTTGAGATGGTTCAACACAAGGCCAACGAACTTTTGGACAAATCTGAAACCCTATCTTGCTCTCGATTCGATGTCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAGAAATCATATTCGCTATTC</pcr_primer_p1>
		<pcr_primer_p2>TGAAAGTTTGAATCTATTTGACA</pcr_primer_p2>
		<pcr_amplicon_size>436</pcr_amplicon_size>
		<canonical_amplicon>CTCAGAAATCATATTCGCTATTCGCCAACACCTGTCGTCACTGAAGCCACTCCAGTGATTCCACCAAGCACTTCAGTTGATAGAGAAGAGTGAGTGGAATACGGTCAATGTATTTTTCAGTGGATGTTTTGTCTTGAGCTCTTTGAGTCTGGAGCTCTTTAAAATTTTCGATGGGTGTAAAACAGACCTAGATTGAAAACCTTGCATTCACAGAATTTTTTGAAGATTCATTCCATTTTCGATTGCTGAAAGACACCCATTTCTGGTTTTTTCCGTTCTAGGTCTGTTTTACGTCATCCAAAATTATCAAAGGGAACGGGACCTTGATAGTCTTGCTTCTGACTCTTGAAAATGGTTAAAATGACTAAAAATCTGCTGAAAAATACTTACATATATATATTTTTTTGATAGAATGTCAAATAGATTCAAACTTTCA</canonical_amplicon>
		<polymorphic_amplicon>CTCAGAAATCATATTCGCTATTCGCCAACACCTGTCGTCACTGAAGCCACTCCAGTGATTCCACCAAGCACTTCAGTTGATAGAGAAGAGTGAGTGGAATACGGTMAATGTATTTTTCAGTGGATGTTTTGTCTTGAGCTCTTTGAGTCTGGAGCTCTTTAAAATTTTCGATGGGTGTAAAACAGACCTAGATTGAAAACCTTGCATTCACAGAATTTTTTGAAGATTCATTCCATTTTCGATTGCTGAAAGACACCCATTTCTGGTTTTTTCCGTTCTAGGTCTGTTTTACGTCATCCAAAATTATCAAAGGGAACGGGACCTTGATAGTCTTGCTTCTGACTCTTGAAAATGGTTAAAATGACTAAAAATCTGCTGAAAAATACTTACATATATATATTTTTTTGATAGAATGTCAAATAGATTCAAACTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15392</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>233835</contig_pos>
        <strand>+</strand>
        <context>CACTCCAGTG[A/G]TTCCACCAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCATATTCGCTATTCGCCAACACCTGTCGTCACTGAAGCCACTCCAGTG</left_flank>
        <right_flank>TTCCACCAAGCACTTCAGTTGATAGAGAAGAGTGAGTGGAATACGGTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTTTTTTCAAATGGTATTGTTTCAGGAAAAAGAGCTAGAAGAAGCAAAACAAAAAATGGAGCAGCAACTTAGAGAGCAGTTGAGCAGCTGGCACAGTTCGTTCGGACCAAGTCAACCAGTGAGAGGGAAAACTGTATAAAATAATTTTGAATTGTGATAATTTCAGAGAGCTCCAGTGCCACTCTCAGCCGAATTGCAACTCGAAAACTTGGTAATAACTATCAAAAAGTTCATAAATCTGCATTAAAAAATTTTTAAGGGTTCCCCACCAGCTCCACCAGCCTCGATTGCTCAGTCTCCACCAGAAGTTTTGGAGACTACAGCCGAGCCACCAGCGTTCCAAGTGGCTTCCCACGAACGCAAGCTTGCTGAGGAGCGCGAGGACATTGTTGAGCAACAAATGATGCCAGTACCACCACCAACTAAAATCAGCAGCTCTCTCAGAAATCATATTCGCTATTCGCCAACACCTGTCGTCACTGAAGCCACTCCAGTGATTCCACCAAGCACTTCAGTTGATAGAGAAGAGTGAGTGGAATACGGTCAATGTATTTTTCAGTGGATGTTTTGTCTTGAGCTCTTTGAGTCTGGAGCTCTTTAAAATTTTCGATGGGTGTAAAACAGACCTAGATTGAAAACCTTGCATTCACAGAATTTTTTGAAGATTCATTCCATTTTCGATTGCTGAAAGACACCCATTTCTGGTTTTTTCCGTTCTAGGTCTGTTTTACGTCATCCAAAATTATCAAAGGGAACGGGACCTTGATAGTCTTGCTTCTGACTCTTGAAAATGGTTAAAATGACTAAAAATCTGCTGAAAAATACTTACATATATATATTTTTTTGATAGAATGTCAAATAGATTCAAACTTTCAGTGATGAATTCGTATCAAAATGCAATTGTGAGAAAATCTCTCTAGACAAAATGAATGGAAAATGGCTCATGGCTCTTGCCTCACCAAATGTTGTTGAGATGGTTCAACACAAGGCCAACGAA</canonical>
            <polymorphic>GATTTTTTTTCAAATGGTATTGTTTCAGGAAAAAGAGCTAGAAGAAGCAAAACAAAAAATGGAGCAGCAACTTAGAGAGCAGTTGAGCAGCTGGCACAGTTCGTTCGGACCAAGTCAACCAGTGAGAGGGAAAACTGTATAAAATAATTTTGAATTGTGATAATTTCAGAGAGCTCCAGTGCCACTCTCAGCCGAATTGCAACTCGAAAACTTGGTAATAACTATCAAAAAGTTCATAAATCTGCATTAAAAAATTTTTAAGGGTTCCCCACCAGCTCCACCAGCCTCGATTGCTCAGTCTCCACCAGAAGTTTTGGAGACTACAGCCGAGCCACCAGCGTTCCAAGTGGCTTCCCACGAACGCAAGCTTGCTGAGGAGCGCGAGGACATTGTTGAGCAACAAATGATGCCAGTACCACCACCAACTAAAATCAGCAGCTCTCTCAGAAATCATATTCGCTATTCGCCAACACCTGTCGTCACTGAAGCCACTCCAGTGRTTCCACCAAGCACTTCAGTTGATAGAGAAGAGTGAGTGGAATACGGTCAATGTATTTTTCAGTGGATGTTTTGTCTTGAGCTCTTTGAGTCTGGAGCTCTTTAAAATTTTCGATGGGTGTAAAACAGACCTAGATTGAAAACCTTGCATTCACAGAATTTTTTGAAGATTCATTCCATTTTCGATTGCTGAAAGACACCCATTTCTGGTTTTTTCCGTTCTAGGTCTGTTTTACGTCATCCAAAATTATCAAAGGGAACGGGACCTTGATAGTCTTGCTTCTGACTCTTGAAAATGGTTAAAATGACTAAAAATCTGCTGAAAAATACTTACATATATATATTTTTTTGATAGAATGTCAAATAGATTCAAACTTTCAGTGATGAATTCGTATCAAAATGCAATTGTGAGAAAATCTCTCTAGACAAAATGAATGGAAAATGGCTCATGGCTCTTGCCTCACCAAATGTTGTTGAGATGGTTCAACACAAGGCCAACGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>499 135 116 88 82 80</canonical_bands>
                <polymorphic_bands>587 135 116 82 80</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>499 198 168 135</canonical_bands>
                <polymorphic_bands>667 198 135</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAGAAATCATATTCGCTATTC</pcr_primer_p1>
		<pcr_primer_p2>TGAAAGTTTGAATCTATTTGACA</pcr_primer_p2>
		<pcr_amplicon_size>436</pcr_amplicon_size>
		<canonical_amplicon>CTCAGAAATCATATTCGCTATTCGCCAACACCTGTCGTCACTGAAGCCACTCCAGTGATTCCACCAAGCACTTCAGTTGATAGAGAAGAGTGAGTGGAATACGGTCAATGTATTTTTCAGTGGATGTTTTGTCTTGAGCTCTTTGAGTCTGGAGCTCTTTAAAATTTTCGATGGGTGTAAAACAGACCTAGATTGAAAACCTTGCATTCACAGAATTTTTTGAAGATTCATTCCATTTTCGATTGCTGAAAGACACCCATTTCTGGTTTTTTCCGTTCTAGGTCTGTTTTACGTCATCCAAAATTATCAAAGGGAACGGGACCTTGATAGTCTTGCTTCTGACTCTTGAAAATGGTTAAAATGACTAAAAATCTGCTGAAAAATACTTACATATATATATTTTTTTGATAGAATGTCAAATAGATTCAAACTTTCA</canonical_amplicon>
		<polymorphic_amplicon>CTCAGAAATCATATTCGCTATTCGCCAACACCTGTCGTCACTGAAGCCACTCCAGTGRTTCCACCAAGCACTTCAGTTGATAGAGAAGAGTGAGTGGAATACGGTCAATGTATTTTTCAGTGGATGTTTTGTCTTGAGCTCTTTGAGTCTGGAGCTCTTTAAAATTTTCGATGGGTGTAAAACAGACCTAGATTGAAAACCTTGCATTCACAGAATTTTTTGAAGATTCATTCCATTTTCGATTGCTGAAAGACACCCATTTCTGGTTTTTTCCGTTCTAGGTCTGTTTTACGTCATCCAAAATTATCAAAGGGAACGGGACCTTGATAGTCTTGCTTCTGACTCTTGAAAATGGTTAAAATGACTAAAAATCTGCTGAAAAATACTTACATATATATATTTTTTTGATAGAATGTCAAATAGATTCAAACTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15393</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>234288</contig_pos>
        <strand>+</strand>
        <context>GCTCATGGCT[A/C]TTGCCTCACC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTGTGAGAAAATCTCTCTAGACAAAATGAATGGAAAATGGCTCATGGCT</left_flank>
        <right_flank>TTGCCTCACCAAATGTTGTTGAGATGGTTCAACACAAGGCCAACGAACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTCGCTATTCGCCAACACCTGTCGTCACTGAAGCCACTCCAGTGATTCCACCAAGCACTTCAGTTGATAGAGAAGAGTGAGTGGAATACGGTCAATGTATTTTTCAGTGGATGTTTTGTCTTGAGCTCTTTGAGTCTGGAGCTCTTTAAAATTTTCGATGGGTGTAAAACAGACCTAGATTGAAAACCTTGCATTCACAGAATTTTTTGAAGATTCATTCCATTTTCGATTGCTGAAAGACACCCATTTCTGGTTTTTTCCGTTCTAGGTCTGTTTTACGTCATCCAAAATTATCAAAGGGAACGGGACCTTGATAGTCTTGCTTCTGACTCTTGAAAATGGTTAAAATGACTAAAAATCTGCTGAAAAATACTTACATATATATATTTTTTTGATAGAATGTCAAATAGATTCAAACTTTCAGTGATGAATTCGTATCAAAATGCAATTGTGAGAAAATCTCTCTAGACAAAATGAATGGAAAATGGCTCATGGCTCTTGCCTCACCAAATGTTGTTGAGATGGTTCAACACAAGGCCAACGAACTTTTGGACAAATCTGAAACCCTATCTTGCTCTCGATTCGATGTCTCCGCTGGAAAACAATCTGTCGCTGCTCAAGATGCTAGACTAATCTGGCAATTCAGAACTCAAGGAGCTCCAAAACTTTTCCGACTTCGCGGAAGCGCACTGACCATGGATCATGAGTCGGTCAGAGTTCAAATGGCAGACTTCCAAGGGGATAACTTCAGTTTTCCATGTAAGTCAATTTTTTTTGATTTCAAAAATTTTCCATGAACTCTTTCTATCTTACAGTCTGTGTTTTGAAATCCGGCGGAACCTCTTCGGCCTACGAGCATCTTCTTGTTACCAACAGTCAAGGAAACTGCAAGGATGTTGCTCTTCTGGTCAGAGATCCACAAGAATTCTTCGACAACCCGAATAAGCAGCTCCAGAAGTACCTGAAGACTGTAAGTTGTAATTCTTCTGTGAAACTAT</canonical>
            <polymorphic>TATTCGCTATTCGCCAACACCTGTCGTCACTGAAGCCACTCCAGTGATTCCACCAAGCACTTCAGTTGATAGAGAAGAGTGAGTGGAATACGGTCAATGTATTTTTCAGTGGATGTTTTGTCTTGAGCTCTTTGAGTCTGGAGCTCTTTAAAATTTTCGATGGGTGTAAAACAGACCTAGATTGAAAACCTTGCATTCACAGAATTTTTTGAAGATTCATTCCATTTTCGATTGCTGAAAGACACCCATTTCTGGTTTTTTCCGTTCTAGGTCTGTTTTACGTCATCCAAAATTATCAAAGGGAACGGGACCTTGATAGTCTTGCTTCTGACTCTTGAAAATGGTTAAAATGACTAAAAATCTGCTGAAAAATACTTACATATATATATTTTTTTGATAGAATGTCAAATAGATTCAAACTTTCAGTGATGAATTCGTATCAAAATGCAATTGTGAGAAAATCTCTCTAGACAAAATGAATGGAAAATGGCTCATGGCTMTTGCCTCACCAAATGTTGTTGAGATGGTTCAACACAAGGCCAACGAACTTTTGGACAAATCTGAAACCCTATCTTGCTCTCGATTCGATGTCTCCGCTGGAAAACAATCTGTCGCTGCTCAAGATGCTAGACTAATCTGGCAATTCAGAACTCAAGGAGCTCCAAAACTTTTCCGACTTCGCGGAAGCGCACTGACCATGGATCATGAGTCGGTCAGAGTTCAAATGGCAGACTTCCAAGGGGATAACTTCAGTTTTCCATGTAAGTCAATTTTTTTTGATTTCAAAAATTTTCCATGAACTCTTTCTATCTTACAGTCTGTGTTTTGAAATCCGGCGGAACCTCTTCGGCCTACGAGCATCTTCTTGTTACCAACAGTCAAGGAAACTGCAAGGATGTTGCTCTTCTGGTCAGAGATCCACAAGAATTCTTCGACAACCCGAATAAGCAGCTCCAGAAGTACCTGAAGACTGTAAGTTGTAATTCTTCTGTGAAACTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCAAATAGATTCAAACTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>AGTTCTGAATTGCCAGATTAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTCAAATAGATTCAAACTTTCAGTGATGAATTCGTATCAAAATGCAATTGTGAGAAAATCTCTCTAGACAAAATGAATGGAAAATGGCTCATGGCTCTTGCCTCACCAAATGTTGTTGAGATGGTTCAACACAAGGCCAACGAACTTTTGGACAAATCTGAAACCCTATCTTGCTCTCGATTCGATGTCTCCGCTGGAAAACAATCTGTCGCTGCTCAAGATGCTAGACTAATCTGGCAATTCAGAACT</canonical_amplicon>
		<polymorphic_amplicon>TGTCAAATAGATTCAAACTTTCAGTGATGAATTCGTATCAAAATGCAATTGTGAGAAAATCTCTCTAGACAAAATGAATGGAAAATGGCTCATGGCTMTTGCCTCACCAAATGTTGTTGAGATGGTTCAACACAAGGCCAACGAACTTTTGGACAAATCTGAAACCCTATCTTGCTCTCGATTCGATGTCTCCGCTGGAAAACAATCTGTCGCTGCTCAAGATGCTAGACTAATCTGGCAATTCAGAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15394</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>339541</contig_pos>
        <strand>+</strand>
        <context>AGAAAGGAAA[A/G]AAAAAGAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGAAGCGGGTGTTGTCCCGTTTTTGGGCAAGAAGGAGAGAAAGGAAA</left_flank>
        <right_flank>AAAAAGAAGACGACTCTTCCTCCCAAAAAATTTTGGGGCTGATGGTGACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGCAATGCTCGGATATATCAAAAATCTCAAAATAATCTCCTCTCAACAAATATCTTTCAAAAATTTTTTCAAAAACAATTTTTGGAAAACAATCTAAAAACTGCAAAATGCAGCGCCAACTATGATCTATGTTTCTGGAACACGCTCTTTTAACACCCACACAATGATTGGACACTTTGCCCCCTGTTCTCACTTGATCTTCCCCTTCAAAAGTGAACACTTTAGTCAACTACCTGTTTCACTCTATGCGCTTAGAGTCCACCACCACCACACTGCTCCTAGACAAATGCACAATTCGTTGTTTTGTTTGTTTTCGTCCAAAAAGAAACAAGTTGATCCAATCTTGTGTGTCGCCCCATCCTTTTTTACCACCACCACTGCTTTGCCATTCGTTTTTCCACACTGACATTGCCATCCCATCTTGCCTTTTTTCTATTTTCCTTTTTTTTTTGAAGCGGGTGTTGTCCCGTTTTTGGGCAAGAAGGAGAGAAAGGAAAAAAAAAGAAGACGACTCTTCCTCCCAAAAAATTTTGGGGCTGATGGTGACATCATCAAACAGGAGGAGCAGAGAGTCCAATGCATATATGCACCGTTGTTGTTTTTTCCTGCTTTTTTTGCTCCAAATGTTTTTTTCCAGTCTTGGATTTCCTACATCGTCATAAAATCTCCTTTTTCTTCGTTTCTCAGTTGTTCTATACTTTTTTAAAATTGCTTTTTTTCAGTTTGGGTAACAGTCCAAGACATGGAAAAAATGAGAAACGGAGAAGAGAATAAAACGGTAAGTATTTTTTTCCAAAGTTTTTAGATAAAAAATTCCAACATGAGACATCGCGTGTGATCCCAAAAAAGTAACTTTTCATGTTCATGCATAACTCTACAAATTTTTGGTTCCAGTAGTTTTAAGCTTTAGACCAATTCACGTTTAGTTATTTCAAACATCTGAAAAAAATCTGTTCATCGAAGATTTTCATTCAATTCAATTTTTATTCTTTTCCCAA</canonical>
            <polymorphic>TTAGCAATGCTCGGATATATCAAAAATCTCAAAATAATCTCCTCTCAACAAATATCTTTCAAAAATTTTTTCAAAAACAATTTTTGGAAAACAATCTAAAAACTGCAAAATGCAGCGCCAACTATGATCTATGTTTCTGGAACACGCTCTTTTAACACCCACACAATGATTGGACACTTTGCCCCCTGTTCTCACTTGATCTTCCCCTTCAAAAGTGAACACTTTAGTCAACTACCTGTTTCACTCTATGCGCTTAGAGTCCACCACCACCACACTGCTCCTAGACAAATGCACAATTCGTTGTTTTGTTTGTTTTCGTCCAAAAAGAAACAAGTTGATCCAATCTTGTGTGTCGCCCCATCCTTTTTTACCACCACCACTGCTTTGCCATTCGTTTTTCCACACTGACATTGCCATCCCATCTTGCCTTTTTTCTATTTTCCTTTTTTTTTTGAAGCGGGTGTTGTCCCGTTTTTGGGCAAGAAGGAGAGAAAGGAAARAAAAAGAAGACGACTCTTCCTCCCAAAAAATTTTGGGGCTGATGGTGACATCATCAAACAGGAGGAGCAGAGAGTCCAATGCATATATGCACCGTTGTTGTTTTTTCCTGCTTTTTTTGCTCCAAATGTTTTTTTCCAGTCTTGGATTTCCTACATCGTCATAAAATCTCCTTTTTCTTCGTTTCTCAGTTGTTCTATACTTTTTTAAAATTGCTTTTTTTCAGTTTGGGTAACAGTCCAAGACATGGAAAAAATGAGAAACGGAGAAGAGAATAAAACGGTAAGTATTTTTTTCCAAAGTTTTTAGATAAAAAATTCCAACATGAGACATCGCGTGTGATCCCAAAAAAGTAACTTTTCATGTTCATGCATAACTCTACAAATTTTTGGTTCCAGTAGTTTTAAGCTTTAGACCAATTCACGTTTAGTTATTTCAAACATCTGAAAAAAATCTGTTCATCGAAGATTTTCATTCAATTCAATTTTTATTCTTTTCCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAAACAAGTTGATCCAATC</pcr_primer_p1>
		<pcr_primer_p2>ACTCTCTGCTCCTCCTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAAGAAACAAGTTGATCCAATCTTGTGTGTCGCCCCATCCTTTTTTACCACCACCACTGCTTTGCCATTCGTTTTTCCACACTGACATTGCCATCCCATCTTGCCTTTTTTCTATTTTCCTTTTTTTTTTGAAGCGGGTGTTGTCCCGTTTTTGGGCAAGAAGGAGAGAAAGGAAAAAAAAAGAAGACGACTCTTCCTCCCAAAAAATTTTGGGGCTGATGGTGACATCATCAAACAGGAGGAGCAGAGAGT</canonical_amplicon>
		<polymorphic_amplicon>AAAGAAACAAGTTGATCCAATCTTGTGTGTCGCCCCATCCTTTTTTACCACCACCACTGCTTTGCCATTCGTTTTTCCACACTGACATTGCCATCCCATCTTGCCTTTTTTCTATTTTCCTTTTTTTTTTGAAGCGGGTGTTGTCCCGTTTTTGGGCAAGAAGGAGAGAAAGGAAARAAAAAGAAGACGACTCTTCCTCCCAAAAAATTTTGGGGCTGATGGTGACATCATCAAACAGGAGGAGCAGAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15395</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>358868</contig_pos>
        <strand></strand>
        <context>AACTTTTAAC[A/T]TTTTTTTACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGTTCATGACGAATTCTCCGCGGGCGCACTGAAAAGAAAAACTTTTAAC</left_flank>
        <right_flank>TTTTTTTACATCTGTGTCAATGCTTACATATTCTGGATGCTTTGATGCAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCACGTCGTCGTTTCATCACGATTCTAGTATTTTCTGTCACATGTTCATTATCTGAAACAAACAATTTTCATCACGAAAAGACAACGGCGAACTCACTGGTGACGCTCCATAACAGCATGATGTGCAAGAAGACCACTTCCGCATCGTTCACCTTCATCGACACGAATGGATGGATGACGTTGCTCCAGAATCGATTGAATGTTGGTGCGAAGGTTCTGCAATTTCTAGAATTCACCAACGCGTGGCGTTTTGCGTTCGACTTAAATCGCGTCTGGGTTAGGTGACGTTAATTGTTGACAACATAGGTTAAGTGGTATTTTCGGAAGCTCCATAGAATTGTTAAGACTCAATTAAATCAAAAATCTCACTCTCTCTTGGCTTGAATCTGGTGTGGATCGTCATCAGGAAGCTCAAATCCAGTACGATCATTTGGGACGAATGTGAAGTTGTTCATGACGAATTCTCCGCGGGCGCACTGAAAAGAAAAACTTTTAACATTTTTTTACATCTGTGTCAATGCTTACATATTCTGGATGCTTTGATGCACTGTAGAAATGGTCCAAACTCAACTTTCTAACAGAGTATCTCTTCAGAAGGGATGACTTATCCTCACTGGGAAGATCTGTATAAGGCTGTTGTTTTTCAATCCAGTACAAAAGTCCAGTGAGCTCCACAGCTGATAACTTGCTGACATCTACTGGATCCATCCTTCTGAGTTTTTGTCCTGTGGCCAGTTCGTCCAAAAACTGTTCGAAGGTGGAGAAGGAAAGTTGCATCATACGTTGGTGCTCTCCGTACGCGAAGACAAGATGATTGAATTCTTGTTGATCGTCATCGGTTGGTGTAGCTTGACGGGACATTTGGAACTGAAAATTTTGGGTAAAAATCAAAAAATTAGAGTGTTTACAGAATATTTTGTGCTTGGGAGTGTCTTCAATAACAAAGTCAGTTATCACTATACAGTTTTCAGTTGATTGTCGACCATTTTGACCGTTTT</canonical>
            <polymorphic>AGTCACGTCGTCGTTTCATCACGATTCTAGTATTTTCTGTCACATGTTCATTATCTGAAACAAACAATTTTCATCACGAAAAGACAACGGCGAACTCACTGGTGACGCTCCATAACAGCATGATGTGCAAGAAGACCACTTCCGCATCGTTCACCTTCATCGACACGAATGGATGGATGACGTTGCTCCAGAATCGATTGAATGTTGGTGCGAAGGTTCTGCAATTTCTAGAATTCACCAACGCGTGGCGTTTTGCGTTCGACTTAAATCGCGTCTGGGTTAGGTGACGTTAATTGTTGACAACATAGGTTAAGTGGTATTTTCGGAAGCTCCATAGAATTGTTAAGACTCAATTAAATCAAAAATCTCACTCTCTCTTGGCTTGAATCTGGTGTGGATCGTCATCAGGAAGCTCAAATCCAGTACGATCATTTGGGACGAATGTGAAGTTGTTCATGACGAATTCTCCGCGGGCGCACTGAAAAGAAAAACTTTTAACWTTTTTTTACATCTGTGTCAATGCTTACATATTCTGGATGCTTTGATGCACTGTAGAAATGGTCCAAACTCAACTTTCTAACAGAGTATCTCTTCAGAAGGGATGACTTATCCTCACTGGGAAGATCTGTATAAGGCTGTTGTTTTTCAATCCAGTACAAAAGTCCAGTGAGCTCCACAGCTGATAACTTGCTGACATCTACTGGATCCATCCTTCTGAGTTTTTGTCCTGTGGCCAGTTCGTCCAAAAACTGTTCGAAGGTGGAGAAGGAAAGTTGCATCATACGTTGGTGCTCTCCGTACGCGAAGACAAGATGATTGAATTCTTGTTGATCGTCATCGGTTGGTGTAGCTTGACGGGACATTTGGAACTGAAAATTTTGGGTAAAAATCAAAAAATTAGAGTGTTTACAGAATATTTTGTGCTTGGGAGTGTCTTCAATAACAAAGTCAGTTATCACTATACAGTTTTCAGTTGATTGTCGACCATTTTGACCGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGCTCCATAGAATTGTTAAGAC</pcr_primer_p1>
		<pcr_primer_p2>GAGTTTGGACCATTTCTACAGT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAAGCTCCATAGAATTGTTAAGACTCAATTAAATCAAAAATCTCACTCTCTCTTGGCTTGAATCTGGTGTGGATCGTCATCAGGAAGCTCAAATCCAGTACGATCATTTGGGACGAATGTGAAGTTGTTCATGACGAATTCTCCGCGGGCGCACTGAAAAGAAAAACTTTTAACATTTTTTTACATCTGTGTCAATGCTTACATATTCTGGATGCTTTGATGCACTGTAGAAATGGTCCAAACTC</canonical_amplicon>
		<polymorphic_amplicon>GAAGCTCCATAGAATTGTTAAGACTCAATTAAATCAAAAATCTCACTCTCTCTTGGCTTGAATCTGGTGTGGATCGTCATCAGGAAGCTCAAATCCAGTACGATCATTTGGGACGAATGTGAAGTTGTTCATGACGAATTCTCCGCGGGCGCACTGAAAAGAAAAACTTTTAACWTTTTTTTACATCTGTGTCAATGCTTACATATTCTGGATGCTTTGATGCACTGTAGAAATGGTCCAAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15397</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>359169</contig_pos>
        <strand></strand>
        <context>GCTCTCCGTA[C/A]GCGAAGACAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TGTTCGAAGGTGGAGAAGGAAAGTTGCATCATACGTTGGTGCTCTCCGTA</left_flank>
        <right_flank>GCGAAGACAAGATGATTGAATTCTTGTTGATCGTCATCGGTTGGTGTAGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACATAGGTTAAGTGGTATTTTCGGAAGCTCCATAGAATTGTTAAGACTCAATTAAATCAAAAATCTCACTCTCTCTTGGCTTGAATCTGGTGTGGATCGTCATCAGGAAGCTCAAATCCAGTACGATCATTTGGGACGAATGTGAAGTTGTTCATGACGAATTCTCCGCGGGCGCACTGAAAAGAAAAACTTTTAACATTTTTTTACATCTGTGTCAATGCTTACATATTCTGGATGCTTTGATGCACTGTAGAAATGGTCCAAACTCAACTTTCTAACAGAGTATCTCTTCAGAAGGGATGACTTATCCTCACTGGGAAGATCTGTATAAGGCTGTTGTTTTTCAATCCAGTACAAAAGTCCAGTGAGCTCCACAGCTGATAACTTGCTGACATCTACTGGATCCATCCTTCTGAGTTTTTGTCCTGTGGCCAGTTCGTCCAAAAACTGTTCGAAGGTGGAGAAGGAAAGTTGCATCATACGTTGGTGCTCTCCGTACGCGAAGACAAGATGATTGAATTCTTGTTGATCGTCATCGGTTGGTGTAGCTTGACGGGACATTTGGAACTGAAAATTTTGGGTAAAAATCAAAAAATTAGAGTGTTTACAGAATATTTTGTGCTTGGGAGTGTCTTCAATAACAAAGTCAGTTATCACTATACAGTTTTCAGTTGATTGTCGACCATTTTGACCGTTTTCAGTAGTCTGGAGCTCGGATGTCAAGTTTGCGATTATTTTGAAAATACTGGAGGGTGTGAAGCAGAGTTAGATTGACAACTTTGCATTCACAGAATTTTTTAAAAATTTAATTTTGTTTTAGATTTCCAAAATAACCGCTTTGGGACCGTTTTATTGCTGAAAATGGGAAAAAAGTGGGAGTGAAAAAACAGTGTTTTTTGCGTTTTGAGTACAAAAACAGGCAAAAAGGTGCCTTTCAGAAACTGGCAAATACCGTAAAACCTCTAATAGAACGACACCCAGACATCACAATCTATTGTC</canonical>
            <polymorphic>AACATAGGTTAAGTGGTATTTTCGGAAGCTCCATAGAATTGTTAAGACTCAATTAAATCAAAAATCTCACTCTCTCTTGGCTTGAATCTGGTGTGGATCGTCATCAGGAAGCTCAAATCCAGTACGATCATTTGGGACGAATGTGAAGTTGTTCATGACGAATTCTCCGCGGGCGCACTGAAAAGAAAAACTTTTAACATTTTTTTACATCTGTGTCAATGCTTACATATTCTGGATGCTTTGATGCACTGTAGAAATGGTCCAAACTCAACTTTCTAACAGAGTATCTCTTCAGAAGGGATGACTTATCCTCACTGGGAAGATCTGTATAAGGCTGTTGTTTTTCAATCCAGTACAAAAGTCCAGTGAGCTCCACAGCTGATAACTTGCTGACATCTACTGGATCCATCCTTCTGAGTTTTTGTCCTGTGGCCAGTTCGTCCAAAAACTGTTCGAAGGTGGAGAAGGAAAGTTGCATCATACGTTGGTGCTCTCCGTAMGCGAAGACAAGATGATTGAATTCTTGTTGATCGTCATCGGTTGGTGTAGCTTGACGGGACATTTGGAACTGAAAATTTTGGGTAAAAATCAAAAAATTAGAGTGTTTACAGAATATTTTGTGCTTGGGAGTGTCTTCAATAACAAAGTCAGTTATCACTATACAGTTTTCAGTTGATTGTCGACCATTTTGACCGTTTTCAGTAGTCTGGAGCTCGGATGTCAAGTTTGCGATTATTTTGAAAATACTGGAGGGTGTGAAGCAGAGTTAGATTGACAACTTTGCATTCACAGAATTTTTTAAAAATTTAATTTTGTTTTAGATTTCCAAAATAACCGCTTTGGGACCGTTTTATTGCTGAAAATGGGAAAAAAGTGGGAGTGAAAAAACAGTGTTTTTTGCGTTTTGAGTACAAAAACAGGCAAAAAGGTGCCTTTCAGAAACTGGCAAATACCGTAAAACCTCTAATAGAACGACACCCAGACATCACAATCTATTGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 332 169</canonical_bands>
                <polymorphic_bands>831 169</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>412 231 144 123 90</canonical_bands>
                <polymorphic_bands>556 231 123 90</polymorphic_bands>
            </assay>
            <assay>
                <site>CGTACG</site>
                <isoschizomers>
                    <enzyme>BsiWI</enzyme>
                    <enzyme>Pfl23II</enzyme>
                    <enzyme>PspLI</enzyme>
                    <enzyme>SplI</enzyme>
                    <enzyme>SunI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATAAGGCTGTTGTTTTTCAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTTTCAGTTCCAAATGTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATAAGGCTGTTGTTTTTCAATCCAGTACAAAAGTCCAGTGAGCTCCACAGCTGATAACTTGCTGACATCTACTGGATCCATCCTTCTGAGTTTTTGTCCTGTGGCCAGTTCGTCCAAAAACTGTTCGAAGGTGGAGAAGGAAAGTTGCATCATACGTTGGTGCTCTCCGTACGCGAAGACAAGATGATTGAATTCTTGTTGATCGTCATCGGTTGGTGTAGCTTGACGGGACATTTGGAACTGAAAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TATAAGGCTGTTGTTTTTCAATCCAGTACAAAAGTCCAGTGAGCTCCACAGCTGATAACTTGCTGACATCTACTGGATCCATCCTTCTGAGTTTTTGTCCTGTGGCCAGTTCGTCCAAAAACTGTTCGAAGGTGGAGAAGGAAAGTTGCATCATACGTTGGTGCTCTCCGTAMGCGAAGACAAGATGATTGAATTCTTGTTGATCGTCATCGGTTGGTGTAGCTTGACGGGACATTTGGAACTGAAAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15398</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>366729</contig_pos>
        <strand>+</strand>
        <context>TTGGGGTCTC[A/G]TTATCTATCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGACATCATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTC</left_flank>
        <right_flank>TTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGCACAAAGCAGACAGTTTACAAGAGCACAAATTAATTGGGCTTTGTTGGTTTCGGGCGGATAAATGAAGTTTGTGTTTTCATTTGAGATTTTTGAAAATTGCAAAAATTAGTTAAAAATTGTTTTTATGAATCAACTCGCAATATGTTATTTCTGGCGTAACACAAGTATGGCAGCTTTAATGGTAATAGAATGCAAGCTGGAATATCTCAACTTTTCAAATTATTTCGGCCACAATTTGAAAAAAAACCCAAAAACCTATCATGAGTGGTTTTCAAATAAATACTCACTGCTTTTTCTACAACTGTCCGCCGAAAAAATGCATTGCAGGAACGACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGATTTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCTCGGCCGATTTTATATTCCCTAATTTATCAAACAGCACCGACCAAAAATAATTTCAAAAAATATGTAAACCCTGATTTTTAAAAAAGTTGTACCTGCGAATTATATTCGTCTTTCATAATCCGCGCGGATGACGTGGAAGGCGTGGATGATGATAGCGGCGAAATTTTGACGGCTGTGACGGTGTCGTTTCAAGATGTTGTTGTTTCCAGTCGGGGTGTGGTGGATCACAGAAGAAGCGTCGAACACGACGACGAACGGGACCAGACGACGATGGTGATGTGTTGTTTGTCACCACAGAGGCTCTTCGCTTCCTACTAGGTGGGCGTTGCTGCCGCTCTCTGTTCAGCTGAAAAAAAACTGGATAAATGTATATATTTTTTCGAGTATGAGCTATTCTATTGAACGATGAAAAAAA</canonical>
            <polymorphic>TAGCACAAAGCAGACAGTTTACAAGAGCACAAATTAATTGGGCTTTGTTGGTTTCGGGCGGATAAATGAAGTTTGTGTTTTCATTTGAGATTTTTGAAAATTGCAAAAATTAGTTAAAAATTGTTTTTATGAATCAACTCGCAATATGTTATTTCTGGCGTAACACAAGTATGGCAGCTTTAATGGTAATAGAATGCAAGCTGGAATATCTCAACTTTTCAAATTATTTCGGCCACAATTTGAAAAAAAACCCAAAAACCTATCATGAGTGGTTTTCAAATAAATACTCACTGCTTTTTCTACAACTGTCCGCCGAAAAAATGCATTGCAGGAACGACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGATTTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCRTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCTCGGCCGATTTTATATTCCCTAATTTATCAAACAGCACCGACCAAAAATAATTTCAAAAAATATGTAAACCCTGATTTTTAAAAAAGTTGTACCTGCGAATTATATTCGTCTTTCATAATCCGCGCGGATGACGTGGAAGGCGTGGATGATGATAGCGGCGAAATTTTGACGGCTGTGACGGTGTCGTTTCAAGATGTTGTTGTTTCCAGTCGGGGTGTGGTGGATCACAGAAGAAGCGTCGAACACGACGACGAACGGGACCAGACGACGATGGTGATGTGTTGTTTGTCACCACAGAGGCTCTTCGCTTCCTACTAGGTGGGCGTTGCTGCCGCTCTCTGTTCAGCTGAAAAAAAACTGGATAAATGTATATATTTTTTCGAGTATGAGCTATTCTATTGAACGATGAAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAACTAATTGCTCCATAGTGAA</pcr_primer_p1>
		<pcr_primer_p2>AGATAAAAGATGGTGCCCTAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGATTTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCT</canonical_amplicon>
		<polymorphic_amplicon>ACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGATTTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCRTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15399</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>366708</contig_pos>
        <strand>+</strand>
        <context>TTCCTAGAAT[C/T]ACTAAAAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCAGAGACTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAAT</left_flank>
        <right_flank>ACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGGCACAAGAAGATAGAAGTAGCACAAAGCAGACAGTTTACAAGAGCACAAATTAATTGGGCTTTGTTGGTTTCGGGCGGATAAATGAAGTTTGTGTTTTCATTTGAGATTTTTGAAAATTGCAAAAATTAGTTAAAAATTGTTTTTATGAATCAACTCGCAATATGTTATTTCTGGCGTAACACAAGTATGGCAGCTTTAATGGTAATAGAATGCAAGCTGGAATATCTCAACTTTTCAAATTATTTCGGCCACAATTTGAAAAAAAACCCAAAAACCTATCATGAGTGGTTTTCAAATAAATACTCACTGCTTTTTCTACAACTGTCCGCCGAAAAAATGCATTGCAGGAACGACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGATTTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCTCGGCCGATTTTATATTCCCTAATTTATCAAACAGCACCGACCAAAAATAATTTCAAAAAATATGTAAACCCTGATTTTTAAAAAAGTTGTACCTGCGAATTATATTCGTCTTTCATAATCCGCGCGGATGACGTGGAAGGCGTGGATGATGATAGCGGCGAAATTTTGACGGCTGTGACGGTGTCGTTTCAAGATGTTGTTGTTTCCAGTCGGGGTGTGGTGGATCACAGAAGAAGCGTCGAACACGACGACGAACGGGACCAGACGACGATGGTGATGTGTTGTTTGTCACCACAGAGGCTCTTCGCTTCCTACTAGGTGGGCGTTGCTGCCGCTCTCTGTTCAGCTGAAAAAAAACTGGATAAATGTATATATTTTTTCGAGTATGAGCTAT</canonical>
            <polymorphic>ATTGGCACAAGAAGATAGAAGTAGCACAAAGCAGACAGTTTACAAGAGCACAAATTAATTGGGCTTTGTTGGTTTCGGGCGGATAAATGAAGTTTGTGTTTTCATTTGAGATTTTTGAAAATTGCAAAAATTAGTTAAAAATTGTTTTTATGAATCAACTCGCAATATGTTATTTCTGGCGTAACACAAGTATGGCAGCTTTAATGGTAATAGAATGCAAGCTGGAATATCTCAACTTTTCAAATTATTTCGGCCACAATTTGAAAAAAAACCCAAAAACCTATCATGAGTGGTTTTCAAATAAATACTCACTGCTTTTTCTACAACTGTCCGCCGAAAAAATGCATTGCAGGAACGACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGATTTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATYACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCTCGGCCGATTTTATATTCCCTAATTTATCAAACAGCACCGACCAAAAATAATTTCAAAAAATATGTAAACCCTGATTTTTAAAAAAGTTGTACCTGCGAATTATATTCGTCTTTCATAATCCGCGCGGATGACGTGGAAGGCGTGGATGATGATAGCGGCGAAATTTTGACGGCTGTGACGGTGTCGTTTCAAGATGTTGTTGTTTCCAGTCGGGGTGTGGTGGATCACAGAAGAAGCGTCGAACACGACGACGAACGGGACCAGACGACGATGGTGATGTGTTGTTTGTCACCACAGAGGCTCTTCGCTTCCTACTAGGTGGGCGTTGCTGCCGCTCTCTGTTCAGCTGAAAAAAAACTGGATAAATGTATATATTTTTTCGAGTATGAGCTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>233 130 106 103 74 64 63 52 50 49 28 15 11 9 9 4</canonical_bands>
                <polymorphic_bands>233 139 106 103 74 64 63 52 50 49 28 15 11 9 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAACTAATTGCTCCATAGTGAA</pcr_primer_p1>
		<pcr_primer_p2>AGATAAAAGATGGTGCCCTAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGATTTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCT</canonical_amplicon>
		<polymorphic_amplicon>ACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGATTTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATYACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15400</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>366686</contig_pos>
        <strand>+</strand>
        <context>CCCCAGACAT[C/T]ATCCCACTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACAT</left_flank>
        <right_flank>ATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCGTTATCTA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGCAACACCACAGGACCTTATATTGGCACAAGAAGATAGAAGTAGCACAAAGCAGACAGTTTACAAGAGCACAAATTAATTGGGCTTTGTTGGTTTCGGGCGGATAAATGAAGTTTGTGTTTTCATTTGAGATTTTTGAAAATTGCAAAAATTAGTTAAAAATTGTTTTTATGAATCAACTCGCAATATGTTATTTCTGGCGTAACACAAGTATGGCAGCTTTAATGGTAATAGAATGCAAGCTGGAATATCTCAACTTTTCAAATTATTTCGGCCACAATTTGAAAAAAAACCCAAAAACCTATCATGAGTGGTTTTCAAATAAATACTCACTGCTTTTTCTACAACTGTCCGCCGAAAAAATGCATTGCAGGAACGACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGATTTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCTCGGCCGATTTTATATTCCCTAATTTATCAAACAGCACCGACCAAAAATAATTTCAAAAAATATGTAAACCCTGATTTTTAAAAAAGTTGTACCTGCGAATTATATTCGTCTTTCATAATCCGCGCGGATGACGTGGAAGGCGTGGATGATGATAGCGGCGAAATTTTGACGGCTGTGACGGTGTCGTTTCAAGATGTTGTTGTTTCCAGTCGGGGTGTGGTGGATCACAGAAGAAGCGTCGAACACGACGACGAACGGGACCAGACGACGATGGTGATGTGTTGTTTGTCACCACAGAGGCTCTTCGCTTCCTACTAGGTGGGCGTTGCTGCCGCTCTCTGTTCAGCTGAAAAAAAACTGGATAAATGTATA</canonical>
            <polymorphic>GTGCAACACCACAGGACCTTATATTGGCACAAGAAGATAGAAGTAGCACAAAGCAGACAGTTTACAAGAGCACAAATTAATTGGGCTTTGTTGGTTTCGGGCGGATAAATGAAGTTTGTGTTTTCATTTGAGATTTTTGAAAATTGCAAAAATTAGTTAAAAATTGTTTTTATGAATCAACTCGCAATATGTTATTTCTGGCGTAACACAAGTATGGCAGCTTTAATGGTAATAGAATGCAAGCTGGAATATCTCAACTTTTCAAATTATTTCGGCCACAATTTGAAAAAAAACCCAAAAACCTATCATGAGTGGTTTTCAAATAAATACTCACTGCTTTTTCTACAACTGTCCGCCGAAAAAATGCATTGCAGGAACGACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGATTTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACATYATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCTCGGCCGATTTTATATTCCCTAATTTATCAAACAGCACCGACCAAAAATAATTTCAAAAAATATGTAAACCCTGATTTTTAAAAAAGTTGTACCTGCGAATTATATTCGTCTTTCATAATCCGCGCGGATGACGTGGAAGGCGTGGATGATGATAGCGGCGAAATTTTGACGGCTGTGACGGTGTCGTTTCAAGATGTTGTTGTTTCCAGTCGGGGTGTGGTGGATCACAGAAGAAGCGTCGAACACGACGACGAACGGGACCAGACGACGATGGTGATGTGTTGTTTGTCACCACAGAGGCTCTTCGCTTCCTACTAGGTGGGCGTTGCTGCCGCTCTCTGTTCAGCTGAAAAAAAACTGGATAAATGTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAACTAATTGCTCCATAGTGAA</pcr_primer_p1>
		<pcr_primer_p2>AGATAAAAGATGGTGCCCTAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGATTTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCT</canonical_amplicon>
		<polymorphic_amplicon>ACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGATTTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACATYATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15401</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>366666</contig_pos>
        <strand></strand>
        <context>TTTTTCAGAG[A/T]CTCATGTCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACATTCCTGCAAAAATATTGATTTTTTTTAATTTTCCAGTTTTTCAGAG</left_flank>
        <right_flank>CTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATTACTAAAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTAGAACAAGTGATTTTTGTGCAACACCACAGGACCTTATATTGGCACAAGAAGATAGAAGTAGCACAAAGCAGACAGTTTACAAGAGCACAAATTAATTGGGCTTTGTTGGTTTCGGGCGGATAAATGAAGTTTGTGTTTTCATTTGAGATTTTTGAAAATTGCAAAAATTAGTTAAAAATTGTTTTTATGAATCAACTCGCAATATGTTATTTCTGGCGTAACACAAGTATGGCAGCTTTAATGGTAATAGAATGCAAGCTGGAATATCTCAACTTTTCAAATTATTTCGGCCACAATTTGAAAAAAAACCCAAAAACCTATCATGAGTGGTTTTCAAATAAATACTCACTGCTTTTTCTACAACTGTCCGCCGAAAAAATGCATTGCAGGAACGACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGATTTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCTCGGCCGATTTTATATTCCCTAATTTATCAAACAGCACCGACCAAAAATAATTTCAAAAAATATGTAAACCCTGATTTTTAAAAAAGTTGTACCTGCGAATTATATTCGTCTTTCATAATCCGCGCGGATGACGTGGAAGGCGTGGATGATGATAGCGGCGAAATTTTGACGGCTGTGACGGTGTCGTTTCAAGATGTTGTTGTTTCCAGTCGGGGTGTGGTGGATCACAGAAGAAGCGTCGAACACGACGACGAACGGGACCAGACGACGATGGTGATGTGTTGTTTGTCACCACAGAGGCTCTTCGCTTCCTACTAGGTGGGCGTTGCTGCCGCTCTCTGTTCAGCTGAAA</canonical>
            <polymorphic>TGTTAGAACAAGTGATTTTTGTGCAACACCACAGGACCTTATATTGGCACAAGAAGATAGAAGTAGCACAAAGCAGACAGTTTACAAGAGCACAAATTAATTGGGCTTTGTTGGTTTCGGGCGGATAAATGAAGTTTGTGTTTTCATTTGAGATTTTTGAAAATTGCAAAAATTAGTTAAAAATTGTTTTTATGAATCAACTCGCAATATGTTATTTCTGGCGTAACACAAGTATGGCAGCTTTAATGGTAATAGAATGCAAGCTGGAATATCTCAACTTTTCAAATTATTTCGGCCACAATTTGAAAAAAAACCCAAAAACCTATCATGAGTGGTTTTCAAATAAATACTCACTGCTTTTTCTACAACTGTCCGCCGAAAAAATGCATTGCAGGAACGACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGATTTTTTTTAATTTTCCAGTTTTTCAGAGWCTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCTCGGCCGATTTTATATTCCCTAATTTATCAAACAGCACCGACCAAAAATAATTTCAAAAAATATGTAAACCCTGATTTTTAAAAAAGTTGTACCTGCGAATTATATTCGTCTTTCATAATCCGCGCGGATGACGTGGAAGGCGTGGATGATGATAGCGGCGAAATTTTGACGGCTGTGACGGTGTCGTTTCAAGATGTTGTTGTTTCCAGTCGGGGTGTGGTGGATCACAGAAGAAGCGTCGAACACGACGACGAACGGGACCAGACGACGATGGTGATGTGTTGTTTGTCACCACAGAGGCTCTTCGCTTCCTACTAGGTGGGCGTTGCTGCCGCTCTCTGTTCAGCTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNNGTC</site>
                <isoschizomers>
                    <enzyme>BoxI</enzyme>
                    <enzyme>BstPAI</enzyme>
                    <enzyme>PshAI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>501 305 194</canonical_bands>
                <polymorphic_bands>806 194</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAACTAATTGCTCCATAGTGAA</pcr_primer_p1>
		<pcr_primer_p2>AGATAAAAGATGGTGCCCTAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGATTTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCT</canonical_amplicon>
		<polymorphic_amplicon>ACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGATTTTTTTTAATTTTCCAGTTTTTCAGAGWCTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15402</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>366655</contig_pos>
        <strand></strand>
        <context>TAATTTTCCA[G/A]TTTTTCAGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGAACAGACTTGACATTCCTGCAAAAATATTGATTTTTTTTAATTTTCCA</left_flank>
        <right_flank>TTTTTCAGAGACTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGGCTACGCTGTTAGAACAAGTGATTTTTGTGCAACACCACAGGACCTTATATTGGCACAAGAAGATAGAAGTAGCACAAAGCAGACAGTTTACAAGAGCACAAATTAATTGGGCTTTGTTGGTTTCGGGCGGATAAATGAAGTTTGTGTTTTCATTTGAGATTTTTGAAAATTGCAAAAATTAGTTAAAAATTGTTTTTATGAATCAACTCGCAATATGTTATTTCTGGCGTAACACAAGTATGGCAGCTTTAATGGTAATAGAATGCAAGCTGGAATATCTCAACTTTTCAAATTATTTCGGCCACAATTTGAAAAAAAACCCAAAAACCTATCATGAGTGGTTTTCAAATAAATACTCACTGCTTTTTCTACAACTGTCCGCCGAAAAAATGCATTGCAGGAACGACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGATTTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCTCGGCCGATTTTATATTCCCTAATTTATCAAACAGCACCGACCAAAAATAATTTCAAAAAATATGTAAACCCTGATTTTTAAAAAAGTTGTACCTGCGAATTATATTCGTCTTTCATAATCCGCGCGGATGACGTGGAAGGCGTGGATGATGATAGCGGCGAAATTTTGACGGCTGTGACGGTGTCGTTTCAAGATGTTGTTGTTTCCAGTCGGGGTGTGGTGGATCACAGAAGAAGCGTCGAACACGACGACGAACGGGACCAGACGACGATGGTGATGTGTTGTTTGTCACCACAGAGGCTCTTCGCTTCCTACTAGGTGGGCGTTGCTGCCGCTCTCTG</canonical>
            <polymorphic>AGAGGCTACGCTGTTAGAACAAGTGATTTTTGTGCAACACCACAGGACCTTATATTGGCACAAGAAGATAGAAGTAGCACAAAGCAGACAGTTTACAAGAGCACAAATTAATTGGGCTTTGTTGGTTTCGGGCGGATAAATGAAGTTTGTGTTTTCATTTGAGATTTTTGAAAATTGCAAAAATTAGTTAAAAATTGTTTTTATGAATCAACTCGCAATATGTTATTTCTGGCGTAACACAAGTATGGCAGCTTTAATGGTAATAGAATGCAAGCTGGAATATCTCAACTTTTCAAATTATTTCGGCCACAATTTGAAAAAAAACCCAAAAACCTATCATGAGTGGTTTTCAAATAAATACTCACTGCTTTTTCTACAACTGTCCGCCGAAAAAATGCATTGCAGGAACGACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGATTTTTTTTAATTTTCCARTTTTTCAGAGACTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCTCGGCCGATTTTATATTCCCTAATTTATCAAACAGCACCGACCAAAAATAATTTCAAAAAATATGTAAACCCTGATTTTTAAAAAAGTTGTACCTGCGAATTATATTCGTCTTTCATAATCCGCGCGGATGACGTGGAAGGCGTGGATGATGATAGCGGCGAAATTTTGACGGCTGTGACGGTGTCGTTTCAAGATGTTGTTGTTTCCAGTCGGGGTGTGGTGGATCACAGAAGAAGCGTCGAACACGACGACGAACGGGACCAGACGACGATGGTGATGTGTTGTTTGTCACCACAGAGGCTCTTCGCTTCCTACTAGGTGGGCGTTGCTGCCGCTCTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAACTAATTGCTCCATAGTGAA</pcr_primer_p1>
		<pcr_primer_p2>AGATAAAAGATGGTGCCCTAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGATTTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCT</canonical_amplicon>
		<polymorphic_amplicon>ACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGATTTTTTTTAATTTTCCARTTTTTCAGAGACTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15403</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>366497</contig_pos>
        <strand></strand>
        <context>aCCTATCATG[A/T]GTGGTTTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCAAATTATTTCGGCCACAATTTGAAAAAAAACCCAAAAACCTATCATG</left_flank>
        <right_flank>GTGGTTTTCAAATAAATACTCACTGCTTTTTCTACAACTGTCCGCCGAAA</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGCACAAATTTTTATCAGTTCTCTCGTTTTTTCTCTCATCTATGGTTGGCCGAGTCGCCACTTCCCGGTGATCTTGGATCCCTAAATTATCGAGGAGAAAGAAAGGAAAAAGCCAATCGGAAGCTTATGAAAAATGTTTACATACGCTCTTCACTCAGAGGCTACGCTGTTAGAACAAGTGATTTTTGTGCAACACCACAGGACCTTATATTGGCACAAGAAGATAGAAGTAGCACAAAGCAGACAGTTTACAAGAGCACAAATTAATTGGGCTTTGTTGGTTTCGGGCGGATAAATGAAGTTTGTGTTTTCATTTGAGATTTTTGAAAATTGCAAAAATTAGTTAAAAATTGTTTTTATGAATCAACTCGCAATATGTTATTTCTGGCGTAACACAAGTATGGCAGCTTTAATGGTAATAGAATGCAAGCTGGAATATCTCAACTTTTCAAATTATTTCGGCCACAATTTGAAAAAAAACCCAAAAACCTATCATGAGTGGTTTTCAAATAAATACTCACTGCTTTTTCTACAACTGTCCGCCGAAAAAATGCATTGCAGGAACGACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGATTTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCTCGGCCGATTTTATATTCCCTAATTTATCAAACAGCACCGACCAAAAATAATTTCAAAAAATATGTAAACCCTGATTTTTAAAAAAGTTGTACCTGCGAATTATATTCGTCTTTCATAATCCGCGCGGATGACGTGGAAGGCGTGGATGATGATAGCGGCGAAATTTTGACGGCTGTGACGGTG</canonical>
            <polymorphic>AAAGCACAAATTTTTATCAGTTCTCTCGTTTTTTCTCTCATCTATGGTTGGCCGAGTCGCCACTTCCCGGTGATCTTGGATCCCTAAATTATCGAGGAGAAAGAAAGGAAAAAGCCAATCGGAAGCTTATGAAAAATGTTTACATACGCTCTTCACTCAGAGGCTACGCTGTTAGAACAAGTGATTTTTGTGCAACACCACAGGACCTTATATTGGCACAAGAAGATAGAAGTAGCACAAAGCAGACAGTTTACAAGAGCACAAATTAATTGGGCTTTGTTGGTTTCGGGCGGATAAATGAAGTTTGTGTTTTCATTTGAGATTTTTGAAAATTGCAAAAATTAGTTAAAAATTGTTTTTATGAATCAACTCGCAATATGTTATTTCTGGCGTAACACAAGTATGGCAGCTTTAATGGTAATAGAATGCAAGCTGGAATATCTCAACTTTTCAAATTATTTCGGCCACAATTTGAAAAAAAACCCAAAAACCTATCATGWGTGGTTTTCAAATAAATACTCACTGCTTTTTCTACAACTGTCCGCCGAAAAAATGCATTGCAGGAACGACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGATTTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCTCGGCCGATTTTATATTCCCTAATTTATCAAACAGCACCGACCAAAAATAATTTCAAAAAATATGTAAACCCTGATTTTTAAAAAAGTTGTACCTGCGAATTATATTCGTCTTTCATAATCCGCGCGGATGACGTGGAAGGCGTGGATGATGATAGCGGCGAAATTTTGACGGCTGTGACGGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATAAATGAAGTTTGTGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>GAGCAATTAGTTGTCGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>GGATAAATGAAGTTTGTGTTTTCATTTGAGATTTTTGAAAATTGCAAAAATTAGTTAAAAATTGTTTTTATGAATCAACTCGCAATATGTTATTTCTGGCGTAACACAAGTATGGCAGCTTTAATGGTAATAGAATGCAAGCTGGAATATCTCAACTTTTCAAATTATTTCGGCCACAATTTGAAAAAAAACCCAAAAACCTATCATGAGTGGTTTTCAAATAAATACTCACTGCTTTTTCTACAACTGTCCGCCGAAAAAATGCATTGCAGGAACGACAACTAATTGCTC</canonical_amplicon>
		<polymorphic_amplicon>GGATAAATGAAGTTTGTGTTTTCATTTGAGATTTTTGAAAATTGCAAAAATTAGTTAAAAATTGTTTTTATGAATCAACTCGCAATATGTTATTTCTGGCGTAACACAAGTATGGCAGCTTTAATGGTAATAGAATGCAAGCTGGAATATCTCAACTTTTCAAATTATTTCGGCCACAATTTGAAAAAAAACCCAAAAACCTATCATGWGTGGTTTTCAAATAAATACTCACTGCTTTTTCTACAACTGTCCGCCGAAAAAATGCATTGCAGGAACGACAACTAATTGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15404</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>366462</contig_pos>
        <strand></strand>
        <context>attawttcgg[C/T]cacaatttga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGGTAATAGAATGCAAGCTGGAATATCTCAACTTTTCAAATTATTTCGG</left_flank>
        <right_flank>CACAATTTGAAAAAAAACCCAAAAACCTATCATGAGTGGTTTTCAAATAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACCAAATTTGGCTAGTTATTGTCTTTTTCTGCAAAAGCACAAATTTTTATCAGTTCTCTCGTTTTTTCTCTCATCTATGGTTGGCCGAGTCGCCACTTCCCGGTGATCTTGGATCCCTAAATTATCGAGGAGAAAGAAAGGAAAAAGCCAATCGGAAGCTTATGAAAAATGTTTACATACGCTCTTCACTCAGAGGCTACGCTGTTAGAACAAGTGATTTTTGTGCAACACCACAGGACCTTATATTGGCACAAGAAGATAGAAGTAGCACAAAGCAGACAGTTTACAAGAGCACAAATTAATTGGGCTTTGTTGGTTTCGGGCGGATAAATGAAGTTTGTGTTTTCATTTGAGATTTTTGAAAATTGCAAAAATTAGTTAAAAATTGTTTTTATGAATCAACTCGCAATATGTTATTTCTGGCGTAACACAAGTATGGCAGCTTTAATGGTAATAGAATGCAAGCTGGAATATCTCAACTTTTCAAATTATTTCGGCCACAATTTGAAAAAAAACCCAAAAACCTATCATGAGTGGTTTTCAAATAAATACTCACTGCTTTTTCTACAACTGTCCGCCGAAAAAATGCATTGCAGGAACGACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGATTTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCTCGGCCGATTTTATATTCCCTAATTTATCAAACAGCACCGACCAAAAATAATTTCAAAAAATATGTAAACCCTGATTTTTAAAAAAGTTGTACCTGCGAATTATATTCGTCTTTCATAATCCGCGCGGATGACGTGGAAGGCGTGGATG</canonical>
            <polymorphic>GAACCAAATTTGGCTAGTTATTGTCTTTTTCTGCAAAAGCACAAATTTTTATCAGTTCTCTCGTTTTTTCTCTCATCTATGGTTGGCCGAGTCGCCACTTCCCGGTGATCTTGGATCCCTAAATTATCGAGGAGAAAGAAAGGAAAAAGCCAATCGGAAGCTTATGAAAAATGTTTACATACGCTCTTCACTCAGAGGCTACGCTGTTAGAACAAGTGATTTTTGTGCAACACCACAGGACCTTATATTGGCACAAGAAGATAGAAGTAGCACAAAGCAGACAGTTTACAAGAGCACAAATTAATTGGGCTTTGTTGGTTTCGGGCGGATAAATGAAGTTTGTGTTTTCATTTGAGATTTTTGAAAATTGCAAAAATTAGTTAAAAATTGTTTTTATGAATCAACTCGCAATATGTTATTTCTGGCGTAACACAAGTATGGCAGCTTTAATGGTAATAGAATGCAAGCTGGAATATCTCAACTTTTCAAATTATTTCGGYCACAATTTGAAAAAAAACCCAAAAACCTATCATGAGTGGTTTTCAAATAAATACTCACTGCTTTTTCTACAACTGTCCGCCGAAAAAATGCATTGCAGGAACGACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGATTTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCTCGGCCGATTTTATATTCCCTAATTTATCAAACAGCACCGACCAAAAATAATTTCAAAAAATATGTAAACCCTGATTTTTAAAAAAGTTGTACCTGCGAATTATATTCGTCTTTCATAATCCGCGCGGATGACGTGGAAGGCGTGGATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>413 321 145 86 35</canonical_bands>
                <polymorphic_bands>734 145 86 35</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>413 356 147 84</canonical_bands>
                <polymorphic_bands>769 147 84</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>321 145 135 111 73 63 38 35 32 23 13 11</canonical_bands>
                <polymorphic_bands>353 145 135 111 73 63 38 35 23 13 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATAAATGAAGTTTGTGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>ACAGTTGTAGAAAAAGCAGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGATAAATGAAGTTTGTGTTTTCATTTGAGATTTTTGAAAATTGCAAAAATTAGTTAAAAATTGTTTTTATGAATCAACTCGCAATATGTTATTTCTGGCGTAACACAAGTATGGCAGCTTTAATGGTAATAGAATGCAAGCTGGAATATCTCAACTTTTCAAATTATTTCGGCCACAATTTGAAAAAAAACCCAAAAACCTATCATGAGTGGTTTTCAAATAAATACTCACTGCTTTTTCTACAACTGT</canonical_amplicon>
		<polymorphic_amplicon>GGATAAATGAAGTTTGTGTTTTCATTTGAGATTTTTGAAAATTGCAAAAATTAGTTAAAAATTGTTTTTATGAATCAACTCGCAATATGTTATTTCTGGCGTAACACAAGTATGGCAGCTTTAATGGTAATAGAATGCAAGCTGGAATATCTCAACTTTTCAAATTATTTCGGYCACAATTTGAAAAAAAACCCAAAAACCTATCATGAGTGGTTTTCAAATAAATACTCACTGCTTTTTCTACAACTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15405</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>394939</contig_pos>
        <strand>+</strand>
        <context>AGAGAAGAAA[G/T]CAAGAAACCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAA</left_flank>
        <right_flank>CAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAATTTTAGAACCATCTTCGTCACATCCTTTTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCGCATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTCAATAACTTTATTT</canonical>
            <polymorphic>GCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAAKCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAATTTTAGAACCATCTTCGTCACATCCTTTTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCGCATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTCAATAACTTTATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>334 289 101 87 84 80 25</canonical_bands>
                <polymorphic_bands>334 289 112 101 84 80</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATCTTCAAAGTTCCAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTCGAAAGATAAGTCAGATGTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAG</canonical_amplicon>
		<polymorphic_amplicon>GAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAAKCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15406</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>394971</contig_pos>
        <strand>+</strand>
        <context>TTTTCTAGAA[C/T]ATTTTCATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAA</left_flank>
        <right_flank>ATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAATTTTAGAACCATCTTCGTCACATCCTTTTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCGCATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTCAATAACTTTATTTTGCCTCCATATGGTTATTTTGGAACATAAAGA</canonical>
            <polymorphic>GTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAAYATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAATTTTAGAACCATCTTCGTCACATCCTTTTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCGCATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTCAATAACTTTATTTTGCCTCCATATGGTTATTTTGGAACATAAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATCTTCAAAGTTCCAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTCGAAAGATAAGTCAGATGTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAG</canonical_amplicon>
		<polymorphic_amplicon>GAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAAYATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15407</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>395019</contig_pos>
        <strand>+</strand>
        <context>GGGAAAGTTG[C/T]YCAACATCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTG</left_flank>
        <right_flank>TCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAATTTTAGAACCATCTTCGTCACATCCTTTTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCGCATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTCAATAACTTTATTTTGCCTCCATATGGTTATTTTGGAACATAAAGAAACTTTCAACTTTCAAAAGTGTTACATTTGAAAAATTGGGTTTTAGAA</canonical>
            <polymorphic>ATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGYTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAATTTTAGAACCATCTTCGTCACATCCTTTTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCGCATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTCAATAACTTTATTTTGCCTCCATATGGTTATTTTGGAACATAAAGAAACTTTCAACTTTCAAAAGTGTTACATTTGAAAAATTGGGTTTTAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTATGTGAAGAGCGGAGTT</pcr_primer_p1>
		<pcr_primer_p2>TTCGAAAACATTAGATTTCACTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAA</canonical_amplicon>
		<polymorphic_amplicon>TTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGYTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15408</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>395020</contig_pos>
        <strand>+</strand>
        <context>GGAAAGTTGY[C/T]CAACATCTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGT</left_flank>
        <right_flank>CAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAATTTTAGAACCATCTTCGTCACATCCTTTTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCGCATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTCAATAACTTTATTTTGCCTCCATATGGTTATTTTGGAACATAAAGAAACTTTCAACTTTCAAAAGTGTTACATTTGAAAAATTGGGTTTTAGAAA</canonical>
            <polymorphic>TTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTYCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAATTTTAGAACCATCTTCGTCACATCCTTTTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCGCATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTCAATAACTTTATTTTGCCTCCATATGGTTATTTTGGAACATAAAGAAACTTTCAACTTTCAAAAGTGTTACATTTGAAAAATTGGGTTTTAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTATGTGAAGAGCGGAGTT</pcr_primer_p1>
		<pcr_primer_p2>TTCGAAAACATTAGATTTCACTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAA</canonical_amplicon>
		<polymorphic_amplicon>TTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTYCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15409</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>395059</contig_pos>
        <strand>+</strand>
        <context>CTGGAATTAT[A/T]TATGATTCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTAT</left_flank>
        <right_flank>TATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAATTTTAGAACCATCTTCGTCACATCCTTTTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCGCATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTCAATAACTTTATTTTGCCTCCATATGGTTATTTTGGAACATAAAGAAACTTTCAACTTTCAAAAGTGTTACATTTGAAAAATTGGGTTTTAGAAAAGCCCAAAAAAATTGGATTTTCAAACATTCAAGATTTTC</canonical>
            <polymorphic>GGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATWTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAATTTTAGAACCATCTTCGTCACATCCTTTTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCGCATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTCAATAACTTTATTTTGCCTCCATATGGTTATTTTGGAACATAAAGAAACTTTCAACTTTCAAAAGTGTTACATTTGAAAAATTGGGTTTTAGAAAAGCCCAAAAAAATTGGATTTTCAAACATTCAAGATTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTATGTGAAGAGCGGAGTT</pcr_primer_p1>
		<pcr_primer_p2>TTCGAAAACATTAGATTTCACTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAA</canonical_amplicon>
		<polymorphic_amplicon>TTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATWTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15410</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>395196</contig_pos>
        <strand>+</strand>
        <context>AATATTATCG[A/C]ATCTTCAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCG</left_flank>
        <right_flank>ATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAATTTTAGAACCATCTTCGTCACATCCTTTTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCGCATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTCAATAACTTTATTTTGCCTCCATATGGTTATTTTGGAACATAAAGAAACTTTCAACTTTCAAAAGTGTTACATTTGAAAAATTGGGTTTTAGAAAAGCCCAAAAAAATTGGATTTTCAAACATTCAAGATTTTCATGGTTTTAAAGTTTTTTGACCCCATTTTTTTTCGAATTCAAAAATTTCTTAAAAATCGGAAATTCCATGAAAATCAATGAAAATCGGCAAAAAACAAAAATAACTGAAGAACCATCTGGGCAAGTCGTTTGGGATT</canonical>
            <polymorphic>GGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAATTTTAGAACCATCTTCGTCACATCCTTTTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCGMATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTCAATAACTTTATTTTGCCTCCATATGGTTATTTTGGAACATAAAGAAACTTTCAACTTTCAAAAGTGTTACATTTGAAAAATTGGGTTTTAGAAAAGCCCAAAAAAATTGGATTTTCAAACATTCAAGATTTTCATGGTTTTAAAGTTTTTTGACCCCATTTTTTTTCGAATTCAAAAATTTCTTAAAAATCGGAAATTCCATGAAAATCAATGAAAATCGGCAAAAAACAAAAATAACTGAAGAACCATCTGGGCAAGTCGTTTGGGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTGAAAAGAGTGAAATCTAAT</pcr_primer_p1>
		<pcr_primer_p2>GACAGGTAATGAGAAATGATCC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CGTTGAAAAGAGTGAAATCTAATGTTTTCGAATTTTAGAACCATCTTCGTCACATCCTTTTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCGCATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTC</canonical_amplicon>
		<polymorphic_amplicon>CGTTGAAAAGAGTGAAATCTAATGTTTTCGAATTTTAGAACCATCTTCGTCACATCCTTTTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCGMATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15411</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>395250</contig_pos>
        <strand>+</strand>
        <context>CTAAAAAAAT[C/G]CAGGAWTACA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAAT</left_flank>
        <right_flank>CAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAATTTTAGAACCATCTTCGTCACATCCTTTTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCGCATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTCAATAACTTTATTTTGCCTCCATATGGTTATTTTGGAACATAAAGAAACTTTCAACTTTCAAAAGTGTTACATTTGAAAAATTGGGTTTTAGAAAAGCCCAAAAAAATTGGATTTTCAAACATTCAAGATTTTCATGGTTTTAAAGTTTTTTGACCCCATTTTTTTTCGAATTCAAAAATTTCTTAAAAATCGGAAATTCCATGAAAATCAATGAAAATCGGCAAAAAACAAAAATAACTGAAGAACCATCTGGGCAAGTCGTTTGGGATTCGTCGAGTGAAAAGATAATACTACTCAAAAAATAAACATAGCCATTATCTCGTT</canonical>
            <polymorphic>AAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAATTTTAGAACCATCTTCGTCACATCCTTTTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCGCATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATSCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTCAATAACTTTATTTTGCCTCCATATGGTTATTTTGGAACATAAAGAAACTTTCAACTTTCAAAAGTGTTACATTTGAAAAATTGGGTTTTAGAAAAGCCCAAAAAAATTGGATTTTCAAACATTCAAGATTTTCATGGTTTTAAAGTTTTTTGACCCCATTTTTTTTCGAATTCAAAAATTTCTTAAAAATCGGAAATTCCATGAAAATCAATGAAAATCGGCAAAAAACAAAAATAACTGAAGAACCATCTGGGCAAGTCGTTTGGGATTCGTCGAGTGAAAAGATAATACTACTCAAAAAATAAACATAGCCATTATCTCGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>356 253 247 144</canonical_bands>
                <polymorphic_bands>391 356 253</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCGGGAATCTTTATATGTT</pcr_primer_p1>
		<pcr_primer_p2>CAGTTTGCTGAGAATGTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCGCATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCGCATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATSCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15412</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>395256</contig_pos>
        <strand>+</strand>
        <context>AAATSCAGGA[A/T]TACAATATTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGA</left_flank>
        <right_flank>TACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAATTTTAGAACCATCTTCGTCACATCCTTTTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCGCATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTCAATAACTTTATTTTGCCTCCATATGGTTATTTTGGAACATAAAGAAACTTTCAACTTTCAAAAGTGTTACATTTGAAAAATTGGGTTTTAGAAAAGCCCAAAAAAATTGGATTTTCAAACATTCAAGATTTTCATGGTTTTAAAGTTTTTTGACCCCATTTTTTTTCGAATTCAAAAATTTCTTAAAAATCGGAAATTCCATGAAAATCAATGAAAATCGGCAAAAAACAAAAATAACTGAAGAACCATCTGGGCAAGTCGTTTGGGATTCGTCGAGTGAAAAGATAATACTACTCAAAAAATAAACATAGCCATTATCTCGTTTATTAA</canonical>
            <polymorphic>AGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAATTTTAGAACCATCTTCGTCACATCCTTTTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCGCATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGAWTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTCAATAACTTTATTTTGCCTCCATATGGTTATTTTGGAACATAAAGAAACTTTCAACTTTCAAAAGTGTTACATTTGAAAAATTGGGTTTTAGAAAAGCCCAAAAAAATTGGATTTTCAAACATTCAAGATTTTCATGGTTTTAAAGTTTTTTGACCCCATTTTTTTTCGAATTCAAAAATTTCTTAAAAATCGGAAATTCCATGAAAATCAATGAAAATCGGCAAAAAACAAAAATAACTGAAGAACCATCTGGGCAAGTCGTTTGGGATTCGTCGAGTGAAAAGATAATACTACTCAAAAAATAAACATAGCCATTATCTCGTTTATTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGGTTGGTCAGAAGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CATATGGAGGCAAAATAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTCAATAACTTTATTTTGCCTCCATATG</canonical_amplicon>
		<polymorphic_amplicon>AAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGAWTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTCAATAACTTTATTTTGCCTCCATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15413</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>395365</contig_pos>
        <strand></strand>
        <context>TTTTTAAATG[C/T]CATRAAAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATG</left_flank>
        <right_flank>CATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAATTTTAGAACCATCTTCGTCACATCCTTTTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCGCATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTCAATAACTTTATTTTGCCTCCATATGGTTATTTTGGAACATAAAGAAACTTTCAACTTTCAAAAGTGTTACATTTGAAAAATTGGGTTTTAGAAAAGCCCAAAAAAATTGGATTTTCAAACATTCAAGATTTTCATGGTTTTAAAGTTTTTTGACCCCATTTTTTTTCGAATTCAAAAATTTCTTAAAAATCGGAAATTCCATGAAAATCAATGAAAATCGGCAAAAAACAAAAATAACTGAAGAACCATCTGGGCAAGTCGTTTGGGATTCGTCGAGTGAAAAGATAATACTACTCAAAAAATAAACATAGCCATTATCTCGTTTATTAAATTTCACTAGCTATCAATTCAATTTTCAGATATCTTCTCCATGTGTTTGATGTGACATCGTCTGCCCCATCAATGGTTCTCCGTGTTGTTGTGCCCGTCAATAATGAAA</canonical>
            <polymorphic>GTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAATTTTAGAACCATCTTCGTCACATCCTTTTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCGCATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGYCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTCAATAACTTTATTTTGCCTCCATATGGTTATTTTGGAACATAAAGAAACTTTCAACTTTCAAAAGTGTTACATTTGAAAAATTGGGTTTTAGAAAAGCCCAAAAAAATTGGATTTTCAAACATTCAAGATTTTCATGGTTTTAAAGTTTTTTGACCCCATTTTTTTTCGAATTCAAAAATTTCTTAAAAATCGGAAATTCCATGAAAATCAATGAAAATCGGCAAAAAACAAAAATAACTGAAGAACCATCTGGGCAAGTCGTTTGGGATTCGTCGAGTGAAAAGATAATACTACTCAAAAAATAAACATAGCCATTATCTCGTTTATTAAATTTCACTAGCTATCAATTCAATTTTCAGATATCTTCTCCATGTGTTTGATGTGACATCGTCTGCCCCATCAATGGTTCTCCGTGTTGTTGTGCCCGTCAATAATGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGGTTGGTCAGAAGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CATATGGAGGCAAAATAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTCAATAACTTTATTTTGCCTCCATATG</canonical_amplicon>
		<polymorphic_amplicon>AAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGYCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTCAATAACTTTATTTTGCCTCCATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15414</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>395369</contig_pos>
        <strand></strand>
        <context>TAAATGYCAT[A/G]AAAATTTCAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCAT</left_flank>
        <right_flank>AAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAATTTTAGAACCATCTTCGTCACATCCTTTTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCGCATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTCAATAACTTTATTTTGCCTCCATATGGTTATTTTGGAACATAAAGAAACTTTCAACTTTCAAAAGTGTTACATTTGAAAAATTGGGTTTTAGAAAAGCCCAAAAAAATTGGATTTTCAAACATTCAAGATTTTCATGGTTTTAAAGTTTTTTGACCCCATTTTTTTTCGAATTCAAAAATTTCTTAAAAATCGGAAATTCCATGAAAATCAATGAAAATCGGCAAAAAACAAAAATAACTGAAGAACCATCTGGGCAAGTCGTTTGGGATTCGTCGAGTGAAAAGATAATACTACTCAAAAAATAAACATAGCCATTATCTCGTTTATTAAATTTCACTAGCTATCAATTCAATTTTCAGATATCTTCTCCATGTGTTTGATGTGACATCGTCTGCCCCATCAATGGTTCTCCGTGTTGTTGTGCCCGTCAATAATGAAACTGA</canonical>
            <polymorphic>TATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAATTTTAGAACCATCTTCGTCACATCCTTTTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCGCATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCATRAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTCAATAACTTTATTTTGCCTCCATATGGTTATTTTGGAACATAAAGAAACTTTCAACTTTCAAAAGTGTTACATTTGAAAAATTGGGTTTTAGAAAAGCCCAAAAAAATTGGATTTTCAAACATTCAAGATTTTCATGGTTTTAAAGTTTTTTGACCCCATTTTTTTTCGAATTCAAAAATTTCTTAAAAATCGGAAATTCCATGAAAATCAATGAAAATCGGCAAAAAACAAAAATAACTGAAGAACCATCTGGGCAAGTCGTTTGGGATTCGTCGAGTGAAAAGATAATACTACTCAAAAAATAAACATAGCCATTATCTCGTTTATTAAATTTCACTAGCTATCAATTCAATTTTCAGATATCTTCTCCATGTGTTTGATGTGACATCGTCTGCCCCATCAATGGTTCTCCGTGTTGTTGTGCCCGTCAATAATGAAACTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGGTTGGTCAGAAGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CATATGGAGGCAAAATAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTCAATAACTTTATTTTGCCTCCATATG</canonical_amplicon>
		<polymorphic_amplicon>AAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCATRAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTCAATAACTTTATTTTGCCTCCATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15415</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>397231</contig_pos>
        <strand>+</strand>
        <context>GCATAACCTG[G/T]ATTTGAAATA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAATTCATTTGACGCATGACAATTGACAACTGTATTAATGCATAACCTG</left_flank>
        <right_flank>ATTTGAAATATGATACAGTTTACAGAAGTGATCAATAAGATCTTAAAAAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTACCGCATCCTCTAACACTTACTAATCTAGCTCCCAATGTTGCAATCGGTAAATGGTTTAAAGCATCTACACTTTGTAGCTTTCGCAAAAGTTCATCAACTGCATCAATCATTATAACATTGCATTCTCGTTTCCCATTTGGGCTTTTCATAACCAATCCAATGTAGTGACGATTATCCTGGAAAAAATGCACCAATTAATGAATCAAAATAAAAAACTACGAACGATTTCACTGGCTTTATAATGCGAAATTTGATTATTCATATAACGTCCCAAAAGACGACTCCGTCCATCGTCGATGTGGAAAAATGAAGTCATAAAATTGGCGACATTGAGAAACGTTTCAACTTTGTTAACGCTGATATATGGACCCAGCTCCTGAAAGTTTTTTTTTTAATTGTGAAATTTAAAAAAAAACAAAACTAACTTCTTGAGCTAAAAGTTGCCTGAATTCATTTGACGCATGACAATTGACAACTGTATTAATGCATAACCTGGATTTGAAATATGATACAGTTTACAGAAGTGATCAATAAGATCTTAAAAACGTGGATTTCAGTTAATTTTGACCATATTCAGGATTCTGGAGTACTTTGAGTATTCTGGAGGGTAATAAAGAGACTTAGATTGAACATTTAAGGTTTCAGACTTATTCGAAAATACTCAGATTTTTAGTTATTTTCCGTCTTTTAAACCATACCTTTTTTAGCAAGCTGAAAACTATGCATTTTAAAAAATTGCTGTATGTGCATAGTTTTCAATCTAGGACTGTTTTACACCCTCTAAAACTTTCAAAGTGATAGGAATCTTAACATCCGACATCCAGACTTCTGAAAATTGTCGACATCAACCGAATAAACGTTTTTTAATATCTCATTGACCGGTGCGGTAGATGCTCGCTAACTTCGGATTACCTCACTATATGATCCCTCTCCTCTATATTTCGATTTCTGATCGTACGTGGTATTGGAACAAGACCCATAAACTGTAGAAACCAT</canonical>
            <polymorphic>ATTACCGCATCCTCTAACACTTACTAATCTAGCTCCCAATGTTGCAATCGGTAAATGGTTTAAAGCATCTACACTTTGTAGCTTTCGCAAAAGTTCATCAACTGCATCAATCATTATAACATTGCATTCTCGTTTCCCATTTGGGCTTTTCATAACCAATCCAATGTAGTGACGATTATCCTGGAAAAAATGCACCAATTAATGAATCAAAATAAAAAACTACGAACGATTTCACTGGCTTTATAATGCGAAATTTGATTATTCATATAACGTCCCAAAAGACGACTCCGTCCATCGTCGATGTGGAAAAATGAAGTCATAAAATTGGCGACATTGAGAAACGTTTCAACTTTGTTAACGCTGATATATGGACCCAGCTCCTGAAAGTTTTTTTTTTAATTGTGAAATTTAAAAAAAAACAAAACTAACTTCTTGAGCTAAAAGTTGCCTGAATTCATTTGACGCATGACAATTGACAACTGTATTAATGCATAACCTGKATTTGAAATATGATACAGTTTACAGAAGTGATCAATAAGATCTTAAAAACGTGGATTTCAGTTAATTTTGACCATATTCAGGATTCTGGAGTACTTTGAGTATTCTGGAGGGTAATAAAGAGACTTAGATTGAACATTTAAGGTTTCAGACTTATTCGAAAATACTCAGATTTTTAGTTATTTTCCGTCTTTTAAACCATACCTTTTTTAGCAAGCTGAAAACTATGCATTTTAAAAAATTGCTGTATGTGCATAGTTTTCAATCTAGGACTGTTTTACACCCTCTAAAACTTTCAAAGTGATAGGAATCTTAACATCCGACATCCAGACTTCTGAAAATTGTCGACATCAACCGAATAAACGTTTTTTAATATCTCATTGACCGGTGCGGTAGATGCTCGCTAACTTCGGATTACCTCACTATATGATCCCTCTCCTCTATATTTCGATTTCTGATCGTACGTGGTATTGGAACAAGACCCATAAACTGTAGAAACCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>503 316 181</canonical_bands>
                <polymorphic_bands>819 181</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>503 316 181</canonical_bands>
                <polymorphic_bands>819 181</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAAGTTGCCTGAATTCATTT</pcr_primer_p1>
		<pcr_primer_p2>ACGGAAAATAACTAAAAATCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAAAGTTGCCTGAATTCATTTGACGCATGACAATTGACAACTGTATTAATGCATAACCTGGATTTGAAATATGATACAGTTTACAGAAGTGATCAATAAGATCTTAAAAACGTGGATTTCAGTTAATTTTGACCATATTCAGGATTCTGGAGTACTTTGAGTATTCTGGAGGGTAATAAAGAGACTTAGATTGAACATTTAAGGTTTCAGACTTATTCGAAAATACTCAGATTTTTAGTTATTTTCCGT</canonical_amplicon>
		<polymorphic_amplicon>TAAAAGTTGCCTGAATTCATTTGACGCATGACAATTGACAACTGTATTAATGCATAACCTGKATTTGAAATATGATACAGTTTACAGAAGTGATCAATAAGATCTTAAAAACGTGGATTTCAGTTAATTTTGACCATATTCAGGATTCTGGAGTACTTTGAGTATTCTGGAGGGTAATAAAGAGACTTAGATTGAACATTTAAGGTTTCAGACTTATTCGAAAATACTCAGATTTTTAGTTATTTTCCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15416</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>397209</contig_pos>
        <strand>+</strand>
        <context>GACAATTGAC[A/G]ACTGTATTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTTCTTGAGCTAAAAGTTGCCTGAATTCATTTGACGCATGACAATTGAC</left_flank>
        <right_flank>ACTGTATTAATGCATAACCTGGATTTGAAATATGATACAGTTTACAGAAG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGAAAACTGAGCATTGGCAGATTACCGCATCCTCTAACACTTACTAATCTAGCTCCCAATGTTGCAATCGGTAAATGGTTTAAAGCATCTACACTTTGTAGCTTTCGCAAAAGTTCATCAACTGCATCAATCATTATAACATTGCATTCTCGTTTCCCATTTGGGCTTTTCATAACCAATCCAATGTAGTGACGATTATCCTGGAAAAAATGCACCAATTAATGAATCAAAATAAAAAACTACGAACGATTTCACTGGCTTTATAATGCGAAATTTGATTATTCATATAACGTCCCAAAAGACGACTCCGTCCATCGTCGATGTGGAAAAATGAAGTCATAAAATTGGCGACATTGAGAAACGTTTCAACTTTGTTAACGCTGATATATGGACCCAGCTCCTGAAAGTTTTTTTTTTAATTGTGAAATTTAAAAAAAAACAAAACTAACTTCTTGAGCTAAAAGTTGCCTGAATTCATTTGACGCATGACAATTGACAACTGTATTAATGCATAACCTGGATTTGAAATATGATACAGTTTACAGAAGTGATCAATAAGATCTTAAAAACGTGGATTTCAGTTAATTTTGACCATATTCAGGATTCTGGAGTACTTTGAGTATTCTGGAGGGTAATAAAGAGACTTAGATTGAACATTTAAGGTTTCAGACTTATTCGAAAATACTCAGATTTTTAGTTATTTTCCGTCTTTTAAACCATACCTTTTTTAGCAAGCTGAAAACTATGCATTTTAAAAAATTGCTGTATGTGCATAGTTTTCAATCTAGGACTGTTTTACACCCTCTAAAACTTTCAAAGTGATAGGAATCTTAACATCCGACATCCAGACTTCTGAAAATTGTCGACATCAACCGAATAAACGTTTTTTAATATCTCATTGACCGGTGCGGTAGATGCTCGCTAACTTCGGATTACCTCACTATATGATCCCTCTCCTCTATATTTCGATTTCTGATCGTACGTGGTATTGGAACAAG</canonical>
            <polymorphic>TCTGAAAACTGAGCATTGGCAGATTACCGCATCCTCTAACACTTACTAATCTAGCTCCCAATGTTGCAATCGGTAAATGGTTTAAAGCATCTACACTTTGTAGCTTTCGCAAAAGTTCATCAACTGCATCAATCATTATAACATTGCATTCTCGTTTCCCATTTGGGCTTTTCATAACCAATCCAATGTAGTGACGATTATCCTGGAAAAAATGCACCAATTAATGAATCAAAATAAAAAACTACGAACGATTTCACTGGCTTTATAATGCGAAATTTGATTATTCATATAACGTCCCAAAAGACGACTCCGTCCATCGTCGATGTGGAAAAATGAAGTCATAAAATTGGCGACATTGAGAAACGTTTCAACTTTGTTAACGCTGATATATGGACCCAGCTCCTGAAAGTTTTTTTTTTAATTGTGAAATTTAAAAAAAAACAAAACTAACTTCTTGAGCTAAAAGTTGCCTGAATTCATTTGACGCATGACAATTGACRACTGTATTAATGCATAACCTGGATTTGAAATATGATACAGTTTACAGAAGTGATCAATAAGATCTTAAAAACGTGGATTTCAGTTAATTTTGACCATATTCAGGATTCTGGAGTACTTTGAGTATTCTGGAGGGTAATAAAGAGACTTAGATTGAACATTTAAGGTTTCAGACTTATTCGAAAATACTCAGATTTTTAGTTATTTTCCGTCTTTTAAACCATACCTTTTTTAGCAAGCTGAAAACTATGCATTTTAAAAAATTGCTGTATGTGCATAGTTTTCAATCTAGGACTGTTTTACACCCTCTAAAACTTTCAAAGTGATAGGAATCTTAACATCCGACATCCAGACTTCTGAAAATTGTCGACATCAACCGAATAAACGTTTTTTAATATCTCATTGACCGGTGCGGTAGATGCTCGCTAACTTCGGATTACCTCACTATATGATCCCTCTCCTCTATATTTCGATTTCTGATCGTACGTGGTATTGGAACAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACAAAACTAACTTCTTGAGCTA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCGAATAAGTCTGAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAACAAAACTAACTTCTTGAGCTAAAAGTTGCCTGAATTCATTTGACGCATGACAATTGACAACTGTATTAATGCATAACCTGGATTTGAAATATGATACAGTTTACAGAAGTGATCAATAAGATCTTAAAAACGTGGATTTCAGTTAATTTTGACCATATTCAGGATTCTGGAGTACTTTGAGTATTCTGGAGGGTAATAAAGAGACTTAGATTGAACATTTAAGGTTTCAGACTTATTCGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAACAAAACTAACTTCTTGAGCTAAAAGTTGCCTGAATTCATTTGACGCATGACAATTGACRACTGTATTAATGCATAACCTGGATTTGAAATATGATACAGTTTACAGAAGTGATCAATAAGATCTTAAAAACGTGGATTTCAGTTAATTTTGACCATATTCAGGATTCTGGAGTACTTTGAGTATTCTGGAGGGTAATAAAGAGACTTAGATTGAACATTTAAGGTTTCAGACTTATTCGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15418</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>397081</contig_pos>
        <strand>+</strand>
        <context>AACGTTTCAA[C/G]TTTGTTAACG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GATGTGGAAAAATGAAGTCATAAAATTGGCGACATTGAGAAACGTTTCAA</left_flank>
        <right_flank>TTTGTTAACGCTGATATATGGACCCAGCTCCTGAAAGTTTTTTTTTTAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGGACCAGGCGTACCTGACTAAAAAGTCTCCAGAATTGCGCAGCCTTGAACAAGCAGCGGAATGTTCGAGCACTCCATGGAAACATGCCAACATTTCTAGCTTGAAATCGTAGTCTTGAGTACTCTTCTGAAAACTGAGCATTGGCAGATTACCGCATCCTCTAACACTTACTAATCTAGCTCCCAATGTTGCAATCGGTAAATGGTTTAAAGCATCTACACTTTGTAGCTTTCGCAAAAGTTCATCAACTGCATCAATCATTATAACATTGCATTCTCGTTTCCCATTTGGGCTTTTCATAACCAATCCAATGTAGTGACGATTATCCTGGAAAAAATGCACCAATTAATGAATCAAAATAAAAAACTACGAACGATTTCACTGGCTTTATAATGCGAAATTTGATTATTCATATAACGTCCCAAAAGACGACTCCGTCCATCGTCGATGTGGAAAAATGAAGTCATAAAATTGGCGACATTGAGAAACGTTTCAACTTTGTTAACGCTGATATATGGACCCAGCTCCTGAAAGTTTTTTTTTTAATTGTGAAATTTAAAAAAAAACAAAACTAACTTCTTGAGCTAAAAGTTGCCTGAATTCATTTGACGCATGACAATTGACAACTGTATTAATGCATAACCTGGATTTGAAATATGATACAGTTTACAGAAGTGATCAATAAGATCTTAAAAACGTGGATTTCAGTTAATTTTGACCATATTCAGGATTCTGGAGTACTTTGAGTATTCTGGAGGGTAATAAAGAGACTTAGATTGAACATTTAAGGTTTCAGACTTATTCGAAAATACTCAGATTTTTAGTTATTTTCCGTCTTTTAAACCATACCTTTTTTAGCAAGCTGAAAACTATGCATTTTAAAAAATTGCTGTATGTGCATAGTTTTCAATCTAGGACTGTTTTACACCCTCTAAAACTTTCAAAGTGATAGGAATCTTAACATCCGACATCCAGACTTCTGAAAATTGTCGACATC</canonical>
            <polymorphic>TATGGACCAGGCGTACCTGACTAAAAAGTCTCCAGAATTGCGCAGCCTTGAACAAGCAGCGGAATGTTCGAGCACTCCATGGAAACATGCCAACATTTCTAGCTTGAAATCGTAGTCTTGAGTACTCTTCTGAAAACTGAGCATTGGCAGATTACCGCATCCTCTAACACTTACTAATCTAGCTCCCAATGTTGCAATCGGTAAATGGTTTAAAGCATCTACACTTTGTAGCTTTCGCAAAAGTTCATCAACTGCATCAATCATTATAACATTGCATTCTCGTTTCCCATTTGGGCTTTTCATAACCAATCCAATGTAGTGACGATTATCCTGGAAAAAATGCACCAATTAATGAATCAAAATAAAAAACTACGAACGATTTCACTGGCTTTATAATGCGAAATTTGATTATTCATATAACGTCCCAAAAGACGACTCCGTCCATCGTCGATGTGGAAAAATGAAGTCATAAAATTGGCGACATTGAGAAACGTTTCAASTTTGTTAACGCTGATATATGGACCCAGCTCCTGAAAGTTTTTTTTTTAATTGTGAAATTTAAAAAAAAACAAAACTAACTTCTTGAGCTAAAAGTTGCCTGAATTCATTTGACGCATGACAATTGACAACTGTATTAATGCATAACCTGGATTTGAAATATGATACAGTTTACAGAAGTGATCAATAAGATCTTAAAAACGTGGATTTCAGTTAATTTTGACCATATTCAGGATTCTGGAGTACTTTGAGTATTCTGGAGGGTAATAAAGAGACTTAGATTGAACATTTAAGGTTTCAGACTTATTCGAAAATACTCAGATTTTTAGTTATTTTCCGTCTTTTAAACCATACCTTTTTTAGCAAGCTGAAAACTATGCATTTTAAAAAATTGCTGTATGTGCATAGTTTTCAATCTAGGACTGTTTTACACCCTCTAAAACTTTCAAAGTGATAGGAATCTTAACATCCGACATCCAGACTTCTGAAAATTGTCGACATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTACGAACGATTTCACT</pcr_primer_p1>
		<pcr_primer_p2>AATGAATTCAGGCAACTTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTACGAACGATTTCACTGGCTTTATAATGCGAAATTTGATTATTCATATAACGTCCCAAAAGACGACTCCGTCCATCGTCGATGTGGAAAAATGAAGTCATAAAATTGGCGACATTGAGAAACGTTTCAACTTTGTTAACGCTGATATATGGACCCAGCTCCTGAAAGTTTTTTTTTTAATTGTGAAATTTAAAAAAAAACAAAACTAACTTCTTGAGCTAAAAGTTGCCTGAATTCATT</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTACGAACGATTTCACTGGCTTTATAATGCGAAATTTGATTATTCATATAACGTCCCAAAAGACGACTCCGTCCATCGTCGATGTGGAAAAATGAAGTCATAAAATTGGCGACATTGAGAAACGTTTCAASTTTGTTAACGCTGATATATGGACCCAGCTCCTGAAAGTTTTTTTTTTAATTGTGAAATTTAAAAAAAAACAAAACTAACTTCTTGAGCTAAAAGTTGCCTGAATTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15419</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>396784</contig_pos>
        <strand>+</strand>
        <context>TGCAATCGGT[A/G]AATGGTTTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACCGCATCCTCTAACACTTACTAATCTAGCTCCCAATGTTGCAATCGGT</left_flank>
        <right_flank>AATGGTTTAAAGCATCTACACTTTGTAGCTTTCGCAAAAGTTCATCAACT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATTTCAAAACGGTATCAATAAAAAACATACAGTAAATACTTAAAGTTCCGGGTTGATATGTGAAATGAGTGGAATATTTGTTTTGATTTCAAAAAAATTTCAAAAATCCGGTCTAACAATTGGGCGTTTCAAAACACAATTTCGCACTTGAAACTGCTTGAAAATGTTAATATTGTTTTCAGGAAATATTGCTTTTTCGAATTGATTTGGTCCAATTTTATAAGTAGCTACGAAGACACCCGGTTGATTGGGACTTGATCTGAAATTATTATATACATAATAATATTGTTTTTCTTATGGACCAGGCGTACCTGACTAAAAAGTCTCCAGAATTGCGCAGCCTTGAACAAGCAGCGGAATGTTCGAGCACTCCATGGAAACATGCCAACATTTCTAGCTTGAAATCGTAGTCTTGAGTACTCTTCTGAAAACTGAGCATTGGCAGATTACCGCATCCTCTAACACTTACTAATCTAGCTCCCAATGTTGCAATCGGTAAATGGTTTAAAGCATCTACACTTTGTAGCTTTCGCAAAAGTTCATCAACTGCATCAATCATTATAACATTGCATTCTCGTTTCCCATTTGGGCTTTTCATAACCAATCCAATGTAGTGACGATTATCCTGGAAAAAATGCACCAATTAATGAATCAAAATAAAAAACTACGAACGATTTCACTGGCTTTATAATGCGAAATTTGATTATTCATATAACGTCCCAAAAGACGACTCCGTCCATCGTCGATGTGGAAAAATGAAGTCATAAAATTGGCGACATTGAGAAACGTTTCAACTTTGTTAACGCTGATATATGGACCCAGCTCCTGAAAGTTTTTTTTTTAATTGTGAAATTTAAAAAAAAACAAAACTAACTTCTTGAGCTAAAAGTTGCCTGAATTCATTTGACGCATGACAATTGACAACTGTATTAATGCATAACCTGGATTTGAAATATGATACAGTTTACAGAAGTGATCAATAAGATCTTAAAAACGTG</canonical>
            <polymorphic>GTATTTCAAAACGGTATCAATAAAAAACATACAGTAAATACTTAAAGTTCCGGGTTGATATGTGAAATGAGTGGAATATTTGTTTTGATTTCAAAAAAATTTCAAAAATCCGGTCTAACAATTGGGCGTTTCAAAACACAATTTCGCACTTGAAACTGCTTGAAAATGTTAATATTGTTTTCAGGAAATATTGCTTTTTCGAATTGATTTGGTCCAATTTTATAAGTAGCTACGAAGACACCCGGTTGATTGGGACTTGATCTGAAATTATTATATACATAATAATATTGTTTTTCTTATGGACCAGGCGTACCTGACTAAAAAGTCTCCAGAATTGCGCAGCCTTGAACAAGCAGCGGAATGTTCGAGCACTCCATGGAAACATGCCAACATTTCTAGCTTGAAATCGTAGTCTTGAGTACTCTTCTGAAAACTGAGCATTGGCAGATTACCGCATCCTCTAACACTTACTAATCTAGCTCCCAATGTTGCAATCGGTRAATGGTTTAAAGCATCTACACTTTGTAGCTTTCGCAAAAGTTCATCAACTGCATCAATCATTATAACATTGCATTCTCGTTTCCCATTTGGGCTTTTCATAACCAATCCAATGTAGTGACGATTATCCTGGAAAAAATGCACCAATTAATGAATCAAAATAAAAAACTACGAACGATTTCACTGGCTTTATAATGCGAAATTTGATTATTCATATAACGTCCCAAAAGACGACTCCGTCCATCGTCGATGTGGAAAAATGAAGTCATAAAATTGGCGACATTGAGAAACGTTTCAACTTTGTTAACGCTGATATATGGACCCAGCTCCTGAAAGTTTTTTTTTTAATTGTGAAATTTAAAAAAAAACAAAACTAACTTCTTGAGCTAAAAGTTGCCTGAATTCATTTGACGCATGACAATTGACAACTGTATTAATGCATAACCTGGATTTGAAATATGATACAGTTTACAGAAGTGATCAATAAGATCTTAAAAACGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTGACTAAAAAGTCTCCAGAA</pcr_primer_p1>
		<pcr_primer_p2>TATAATGATTGATGCAGTTGATG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CCTGACTAAAAAGTCTCCAGAATTGCGCAGCCTTGAACAAGCAGCGGAATGTTCGAGCACTCCATGGAAACATGCCAACATTTCTAGCTTGAAATCGTAGTCTTGAGTACTCTTCTGAAAACTGAGCATTGGCAGATTACCGCATCCTCTAACACTTACTAATCTAGCTCCCAATGTTGCAATCGGTAAATGGTTTAAAGCATCTACACTTTGTAGCTTTCGCAAAAGTTCATCAACTGCATCAATCATTATA</canonical_amplicon>
		<polymorphic_amplicon>CCTGACTAAAAAGTCTCCAGAATTGCGCAGCCTTGAACAAGCAGCGGAATGTTCGAGCACTCCATGGAAACATGCCAACATTTCTAGCTTGAAATCGTAGTCTTGAGTACTCTTCTGAAAACTGAGCATTGGCAGATTACCGCATCCTCTAACACTTACTAATCTAGCTCCCAATGTTGCAATCGGTRAATGGTTTAAAGCATCTACACTTTGTAGCTTTCGCAAAAGTTCATCAACTGCATCAATCATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15420</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>396693</contig_pos>
        <strand>+</strand>
        <context>GCTTGAAATS[A/G]TAGTCTTGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATGTTCGAGCACTCCATGGAAACATGCCAACATTTCTAGCTTGAAATC</left_flank>
        <right_flank>TAGTCTTGAGTACTCTTCTGAAAACTGAGCATTGGCAGATTACCGCATCC</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCTTTTTTTTTGAAAATTTTTAAAAACTATTTTGGCTAAATACATTTCAAAACAAAACTTTAATCAATCAGACTTTTTTTTGAAAATATGTATTTCAAAACGGTATCAATAAAAAACATACAGTAAATACTTAAAGTTCCGGGTTGATATGTGAAATGAGTGGAATATTTGTTTTGATTTCAAAAAAATTTCAAAAATCCGGTCTAACAATTGGGCGTTTCAAAACACAATTTCGCACTTGAAACTGCTTGAAAATGTTAATATTGTTTTCAGGAAATATTGCTTTTTCGAATTGATTTGGTCCAATTTTATAAGTAGCTACGAAGACACCCGGTTGATTGGGACTTGATCTGAAATTATTATATACATAATAATATTGTTTTTCTTATGGACCAGGCGTACCTGACTAAAAAGTCTCCAGAATTGCGCAGCCTTGAACAAGCAGCGGAATGTTCGAGCACTCCATGGAAACATGCCAACATTTCTAGCTTGAAATCGTAGTCTTGAGTACTCTTCTGAAAACTGAGCATTGGCAGATTACCGCATCCTCTAACACTTACTAATCTAGCTCCCAATGTTGCAATCGGTAAATGGTTTAAAGCATCTACACTTTGTAGCTTTCGCAAAAGTTCATCAACTGCATCAATCATTATAACATTGCATTCTCGTTTCCCATTTGGGCTTTTCATAACCAATCCAATGTAGTGACGATTATCCTGGAAAAAATGCACCAATTAATGAATCAAAATAAAAAACTACGAACGATTTCACTGGCTTTATAATGCGAAATTTGATTATTCATATAACGTCCCAAAAGACGACTCCGTCCATCGTCGATGTGGAAAAATGAAGTCATAAAATTGGCGACATTGAGAAACGTTTCAACTTTGTTAACGCTGATATATGGACCCAGCTCCTGAAAGTTTTTTTTTTAATTGTGAAATTTAAAAAAAAACAAAACTAACTTCTTGAGCTAAAAGTTGCCTGAATTCATTTGA</canonical>
            <polymorphic>ACTCTTTTTTTTTGAAAATTTTTAAAAACTATTTTGGCTAAATACATTTCAAAACAAAACTTTAATCAATCAGACTTTTTTTTGAAAATATGTATTTCAAAACGGTATCAATAAAAAACATACAGTAAATACTTAAAGTTCCGGGTTGATATGTGAAATGAGTGGAATATTTGTTTTGATTTCAAAAAAATTTCAAAAATCCGGTCTAACAATTGGGCGTTTCAAAACACAATTTCGCACTTGAAACTGCTTGAAAATGTTAATATTGTTTTCAGGAAATATTGCTTTTTCGAATTGATTTGGTCCAATTTTATAAGTAGCTACGAAGACACCCGGTTGATTGGGACTTGATCTGAAATTATTATATACATAATAATATTGTTTTTCTTATGGACCAGGCGTACCTGACTAAAAAGTCTCCAGAATTGCGCAGCCTTGAACAAGCAGCGGAATGTTCGAGCACTCCATGGAAACATGCCAACATTTCTAGCTTGAAATCRTAGTCTTGAGTACTCTTCTGAAAACTGAGCATTGGCAGATTACCGCATCCTCTAACACTTACTAATCTAGCTCCCAATGTTGCAATCGGTAAATGGTTTAAAGCATCTACACTTTGTAGCTTTCGCAAAAGTTCATCAACTGCATCAATCATTATAACATTGCATTCTCGTTTCCCATTTGGGCTTTTCATAACCAATCCAATGTAGTGACGATTATCCTGGAAAAAATGCACCAATTAATGAATCAAAATAAAAAACTACGAACGATTTCACTGGCTTTATAATGCGAAATTTGATTATTCATATAACGTCCCAAAAGACGACTCCGTCCATCGTCGATGTGGAAAAATGAAGTCATAAAATTGGCGACATTGAGAAACGTTTCAACTTTGTTAACGCTGATATATGGACCCAGCTCCTGAAAGTTTTTTTTTTAATTGTGAAATTTAAAAAAAAACAAAACTAACTTCTTGAGCTAAAAGTTGCCTGAATTCATTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGGGACTTGATCTGAAATTAT</pcr_primer_p1>
		<pcr_primer_p2>CAACATTGGGAGCTAGATTAGTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATTGGGACTTGATCTGAAATTATTATATACATAATAATATTGTTTTTCTTATGGACCAGGCGTACCTGACTAAAAAGTCTCCAGAATTGCGCAGCCTTGAACAAGCAGCGGAATGTTCGAGCACTCCATGGAAACATGCCAACATTTCTAGCTTGAAATCGTAGTCTTGAGTACTCTTCTGAAAACTGAGCATTGGCAGATTACCGCATCCTCTAACACTTACTAATCTAGCTCCCAATGTTG</canonical_amplicon>
		<polymorphic_amplicon>ATTGGGACTTGATCTGAAATTATTATATACATAATAATATTGTTTTTCTTATGGACCAGGCGTACCTGACTAAAAAGTCTCCAGAATTGCGCAGCCTTGAACAAGCAGCGGAATGTTCGAGCACTCCATGGAAACATGCCAACATTTCTAGCTTGAAATCRTAGTCTTGAGTACTCTTCTGAAAACTGAGCATTGGCAGATTACCGCATCCTCTAACACTTACTAATCTAGCTCCCAATGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15421</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>396692</contig_pos>
        <strand>+</strand>
        <context>AGCTTGAAAT[C/G]RTAGTCTTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGAATGTTCGAGCACTCCATGGAAACATGCCAACATTTCTAGCTTGAAAT</left_flank>
        <right_flank>GTAGTCTTGAGTACTCTTCTGAAAACTGAGCATTGGCAGATTACCGCATC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTCTTTTTTTTTGAAAATTTTTAAAAACTATTTTGGCTAAATACATTTCAAAACAAAACTTTAATCAATCAGACTTTTTTTTGAAAATATGTATTTCAAAACGGTATCAATAAAAAACATACAGTAAATACTTAAAGTTCCGGGTTGATATGTGAAATGAGTGGAATATTTGTTTTGATTTCAAAAAAATTTCAAAAATCCGGTCTAACAATTGGGCGTTTCAAAACACAATTTCGCACTTGAAACTGCTTGAAAATGTTAATATTGTTTTCAGGAAATATTGCTTTTTCGAATTGATTTGGTCCAATTTTATAAGTAGCTACGAAGACACCCGGTTGATTGGGACTTGATCTGAAATTATTATATACATAATAATATTGTTTTTCTTATGGACCAGGCGTACCTGACTAAAAAGTCTCCAGAATTGCGCAGCCTTGAACAAGCAGCGGAATGTTCGAGCACTCCATGGAAACATGCCAACATTTCTAGCTTGAAATCGTAGTCTTGAGTACTCTTCTGAAAACTGAGCATTGGCAGATTACCGCATCCTCTAACACTTACTAATCTAGCTCCCAATGTTGCAATCGGTAAATGGTTTAAAGCATCTACACTTTGTAGCTTTCGCAAAAGTTCATCAACTGCATCAATCATTATAACATTGCATTCTCGTTTCCCATTTGGGCTTTTCATAACCAATCCAATGTAGTGACGATTATCCTGGAAAAAATGCACCAATTAATGAATCAAAATAAAAAACTACGAACGATTTCACTGGCTTTATAATGCGAAATTTGATTATTCATATAACGTCCCAAAAGACGACTCCGTCCATCGTCGATGTGGAAAAATGAAGTCATAAAATTGGCGACATTGAGAAACGTTTCAACTTTGTTAACGCTGATATATGGACCCAGCTCCTGAAAGTTTTTTTTTTAATTGTGAAATTTAAAAAAAAACAAAACTAACTTCTTGAGCTAAAAGTTGCCTGAATTCATTTG</canonical>
            <polymorphic>AACTCTTTTTTTTTGAAAATTTTTAAAAACTATTTTGGCTAAATACATTTCAAAACAAAACTTTAATCAATCAGACTTTTTTTTGAAAATATGTATTTCAAAACGGTATCAATAAAAAACATACAGTAAATACTTAAAGTTCCGGGTTGATATGTGAAATGAGTGGAATATTTGTTTTGATTTCAAAAAAATTTCAAAAATCCGGTCTAACAATTGGGCGTTTCAAAACACAATTTCGCACTTGAAACTGCTTGAAAATGTTAATATTGTTTTCAGGAAATATTGCTTTTTCGAATTGATTTGGTCCAATTTTATAAGTAGCTACGAAGACACCCGGTTGATTGGGACTTGATCTGAAATTATTATATACATAATAATATTGTTTTTCTTATGGACCAGGCGTACCTGACTAAAAAGTCTCCAGAATTGCGCAGCCTTGAACAAGCAGCGGAATGTTCGAGCACTCCATGGAAACATGCCAACATTTCTAGCTTGAAATSGTAGTCTTGAGTACTCTTCTGAAAACTGAGCATTGGCAGATTACCGCATCCTCTAACACTTACTAATCTAGCTCCCAATGTTGCAATCGGTAAATGGTTTAAAGCATCTACACTTTGTAGCTTTCGCAAAAGTTCATCAACTGCATCAATCATTATAACATTGCATTCTCGTTTCCCATTTGGGCTTTTCATAACCAATCCAATGTAGTGACGATTATCCTGGAAAAAATGCACCAATTAATGAATCAAAATAAAAAACTACGAACGATTTCACTGGCTTTATAATGCGAAATTTGATTATTCATATAACGTCCCAAAAGACGACTCCGTCCATCGTCGATGTGGAAAAATGAAGTCATAAAATTGGCGACATTGAGAAACGTTTCAACTTTGTTAACGCTGATATATGGACCCAGCTCCTGAAAGTTTTTTTTTTAATTGTGAAATTTAAAAAAAAACAAAACTAACTTCTTGAGCTAAAAGTTGCCTGAATTCATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGGGACTTGATCTGAAATTAT</pcr_primer_p1>
		<pcr_primer_p2>CAACATTGGGAGCTAGATTAGTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATTGGGACTTGATCTGAAATTATTATATACATAATAATATTGTTTTTCTTATGGACCAGGCGTACCTGACTAAAAAGTCTCCAGAATTGCGCAGCCTTGAACAAGCAGCGGAATGTTCGAGCACTCCATGGAAACATGCCAACATTTCTAGCTTGAAATCGTAGTCTTGAGTACTCTTCTGAAAACTGAGCATTGGCAGATTACCGCATCCTCTAACACTTACTAATCTAGCTCCCAATGTTG</canonical_amplicon>
		<polymorphic_amplicon>ATTGGGACTTGATCTGAAATTATTATATACATAATAATATTGTTTTTCTTATGGACCAGGCGTACCTGACTAAAAAGTCTCCAGAATTGCGCAGCCTTGAACAAGCAGCGGAATGTTCGAGCACTCCATGGAAACATGCCAACATTTCTAGCTTGAAATSGTAGTCTTGAGTACTCTTCTGAAAACTGAGCATTGGCAGATTACCGCATCCTCTAACACTTACTAATCTAGCTCCCAATGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15422</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>415904</contig_pos>
        <strand>+</strand>
        <context>ATTCATTGTT[C/T]ACTACGGAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTT</left_flank>
        <right_flank>ACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAAGTGATAACCTTTTCTGGTGAATTTTACGAAAGTCATGTTTCAGCATCTAAACACCGGAAACAACAAATTTTGTTGAAATGTGTTATTTTCAGAGTTTCGCAACATCCAGCTACCGTATGCCCCACCAATCAGAGCATTGCTGATAGAAATCATTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTAT</canonical>
            <polymorphic>GGAAGTGATAACCTTTTCTGGTGAATTTTACGAAAGTCATGTTTCAGCATCTAAACACCGGAAACAACAAATTTTGTTGAAATGTGTTATTTTCAGAGTTTCGCAACATCCAGCTACCGTATGCCCCACCAATCAGAGCATTGCTGATAGAAATCATTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTYACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>337 109 80 78 49 42 34 31 30 29 27 24 23 23 21 16 13 11 8 7 2 2 2 2</canonical_bands>
                <polymorphic_bands>337 109 80 78 49 43 42 34 31 29 27 24 23 23 21 16 11 8 7 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGAGTTAACGATGATGTAGAGC</pcr_primer_p1>
		<pcr_primer_p2>AATCATTATCCTTTCGAAGTTATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATT</canonical_amplicon>
		<polymorphic_amplicon>GTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTYACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15423</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>415918</contig_pos>
        <strand>+</strand>
        <context>ACGGAACTTT[G/T]TAAAACCCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTT</left_flank>
        <right_flank>TAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTGGTGAATTTTACGAAAGTCATGTTTCAGCATCTAAACACCGGAAACAACAAATTTTGTTGAAATGTGTTATTTTCAGAGTTTCGCAACATCCAGCTACCGTATGCCCCACCAATCAGAGCATTGCTGATAGAAATCATTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAA</canonical>
            <polymorphic>TTTCTGGTGAATTTTACGAAAGTCATGTTTCAGCATCTAAACACCGGAAACAACAAATTTTGTTGAAATGTGTTATTTTCAGAGTTTCGCAACATCCAGCTACCGTATGCCCCACCAATCAGAGCATTGCTGATAGAAATCATTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTKTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGAGTTAACGATGATGTAGAGC</pcr_primer_p1>
		<pcr_primer_p2>AATCATTATCCTTTCGAAGTTATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATT</canonical_amplicon>
		<polymorphic_amplicon>GTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTKTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15455</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>474854</contig_pos>
        <strand>+</strand>
        <context>TACTCAAAAA[A/T]RTTTTTTAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGTTTATAAGAATATTTAGTTTGAATACCGTGATAAAGTACTCAAAAA</left_flank>
        <right_flank>TTTTTTTAATAAAGCTTCACGAATGAGAAATACACTAACCATTCCATGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCGTACTTCATTTCCTCCGCTTCCGCCATTATTGTTGTTTTCGTTTACAACCAATATCGCAATGAATCTCCTTTGGTTATCTCGTTCTTCAGATCTGAAAATTATTTTTATTCATTTTTCTCTTGCTCTCAGACCCACCAGCCCATCCAGCCCATCTTGTCAGCTGGTCTTCTTTTCCGTTTGGAATCAATTTTCCTTGCTTCATGTTTTGCAATCTGATTCCTTTATTTTCCTTGTTGACGTCGTTTACATCCTAAATCGCCATCAGATTCAGTAGATCTGAAAATGGCTTTGACTGGGGAACTGACTTGTTTTCCAGATCTGAAAATTTTCTTTAATGATTTCCTTTTGATCTCAAACATACCCATTCTCCAGCTATCATTGCTCCAGCTCTAATCGCACACACATGCGGCCGCACGGTGACCGGTGTTGTCTGAAAATCAAATTTTGTTTATAAGAATATTTAGTTTGAATACCGTGATAAAGTACTCAAAAAATTTTTTTAATAAAGCTTCACGAATGAGAAATACACTAACCATTCCATGGAAATCGTAGTAGTTCACCCTTCCGTTGACCTCATTTTCGTCCAAGATTGCCTGAAGGTTCAGTGGATCTGAACAGGGTTTGGGGTACCAACCCTATTCAGTTCGCTGCCCTTATAAGTATCTGGAAAAAAATTTCAATGATCTGAAAGAGAAAATATTTGAAAAATATGAAACAAGAGTGCGTGAAGAAAAATGCAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTTCTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAGCAACGCTCTTTTAAAAAATTGATGTCAATACCTCTTTTTCTTATTTGTTTGTTATTATGCGCGTTTTCCCGCCAAAAAACTCGCGAGACCAAATTTGATCTACCACAAAAAATGAGGTGTGACAAGTCTAAAGCGCATTACGAAAATTTGTTCATTTTTAG</canonical>
            <polymorphic>ATTTCGTACTTCATTTCCTCCGCTTCCGCCATTATTGTTGTTTTCGTTTACAACCAATATCGCAATGAATCTCCTTTGGTTATCTCGTTCTTCAGATCTGAAAATTATTTTTATTCATTTTTCTCTTGCTCTCAGACCCACCAGCCCATCCAGCCCATCTTGTCAGCTGGTCTTCTTTTCCGTTTGGAATCAATTTTCCTTGCTTCATGTTTTGCAATCTGATTCCTTTATTTTCCTTGTTGACGTCGTTTACATCCTAAATCGCCATCAGATTCAGTAGATCTGAAAATGGCTTTGACTGGGGAACTGACTTGTTTTCCAGATCTGAAAATTTTCTTTAATGATTTCCTTTTGATCTCAAACATACCCATTCTCCAGCTATCATTGCTCCAGCTCTAATCGCACACACATGCGGCCGCACGGTGACCGGTGTTGTCTGAAAATCAAATTTTGTTTATAAGAATATTTAGTTTGAATACCGTGATAAAGTACTCAAAAAWTTTTTTTAATAAAGCTTCACGAATGAGAAATACACTAACCATTCCATGGAAATCGTAGTAGTTCACCCTTCCGTTGACCTCATTTTCGTCCAAGATTGCCTGAAGGTTCAGTGGATCTGAACAGGGTTTGGGGTACCAACCCTATTCAGTTCGCTGCCCTTATAAGTATCTGGAAAAAAATTTCAATGATCTGAAAGAGAAAATATTTGAAAAATATGAAACAAGAGTGCGTGAAGAAAAATGCAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTTCTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAGCAACGCTCTTTTAAAAAATTGATGTCAATACCTCTTTTTCTTATTTGTTTGTTATTATGCGCGTTTTCCCGCCAAAAAACTCGCGAGACCAAATTTGATCTACCACAAAAAATGAGGTGTGACAAGTCTAAAGCGCATTACGAAAATTTGTTCATTTTTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>329 180 146 117 106 53 52 17</canonical_bands>
                <polymorphic_bands>329 232 146 117 106 53 17</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>180 138 117 102 89 75 71 66 53 52 40 17</canonical_bands>
                <polymorphic_bands>232 138 117 102 89 75 71 66 53 40 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCCTTTTGATCTCAAACATAC</pcr_primer_p1>
		<pcr_primer_p2>ATCTTGGACGAAAATGAGGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTCCTTTTGATCTCAAACATACCCATTCTCCAGCTATCATTGCTCCAGCTCTAATCGCACACACATGCGGCCGCACGGTGACCGGTGTTGTCTGAAAATCAAATTTTGTTTATAAGAATATTTAGTTTGAATACCGTGATAAAGTACTCAAAAAATTTTTTTAATAAAGCTTCACGAATGAGAAATACACTAACCATTCCATGGAAATCGTAGTAGTTCACCCTTCCGTTGACCTCATTTTCGTCCAAGAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCCTTTTGATCTCAAACATACCCATTCTCCAGCTATCATTGCTCCAGCTCTAATCGCACACACATGCGGCCGCACGGTGACCGGTGTTGTCTGAAAATCAAATTTTGTTTATAAGAATATTTAGTTTGAATACCGTGATAAAGTACTCAAAAAWTTTTTTTAATAAAGCTTCACGAATGAGAAATACACTAACCATTCCATGGAAATCGTAGTAGTTCACCCTTCCGTTGACCTCATTTTCGTCCAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15456</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>474865</contig_pos>
        <strand></strand>
        <context>RTTTTTTAAT[A/G]AAGCTTCACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATATTTAGTTTGAATACCGTGATAAAGTACTCAAAAAATTTTTTTAAT</left_flank>
        <right_flank>AAGCTTCACGAATGAGAAATACACTAACCATTCCATGGAAATCGTAGTAG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTCCTCCGCTTCCGCCATTATTGTTGTTTTCGTTTACAACCAATATCGCAATGAATCTCCTTTGGTTATCTCGTTCTTCAGATCTGAAAATTATTTTTATTCATTTTTCTCTTGCTCTCAGACCCACCAGCCCATCCAGCCCATCTTGTCAGCTGGTCTTCTTTTCCGTTTGGAATCAATTTTCCTTGCTTCATGTTTTGCAATCTGATTCCTTTATTTTCCTTGTTGACGTCGTTTACATCCTAAATCGCCATCAGATTCAGTAGATCTGAAAATGGCTTTGACTGGGGAACTGACTTGTTTTCCAGATCTGAAAATTTTCTTTAATGATTTCCTTTTGATCTCAAACATACCCATTCTCCAGCTATCATTGCTCCAGCTCTAATCGCACACACATGCGGCCGCACGGTGACCGGTGTTGTCTGAAAATCAAATTTTGTTTATAAGAATATTTAGTTTGAATACCGTGATAAAGTACTCAAAAAATTTTTTTAATAAAGCTTCACGAATGAGAAATACACTAACCATTCCATGGAAATCGTAGTAGTTCACCCTTCCGTTGACCTCATTTTCGTCCAAGATTGCCTGAAGGTTCAGTGGATCTGAACAGGGTTTGGGGTACCAACCCTATTCAGTTCGCTGCCCTTATAAGTATCTGGAAAAAAATTTCAATGATCTGAAAGAGAAAATATTTGAAAAATATGAAACAAGAGTGCGTGAAGAAAAATGCAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTTCTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAGCAACGCTCTTTTAAAAAATTGATGTCAATACCTCTTTTTCTTATTTGTTTGTTATTATGCGCGTTTTCCCGCCAAAAAACTCGCGAGACCAAATTTGATCTACCACAAAAAATGAGGTGTGACAAGTCTAAAGCGCATTACGAAAATTTGTTCATTTTTAGTGAATGAAGAT</canonical>
            <polymorphic>CATTTCCTCCGCTTCCGCCATTATTGTTGTTTTCGTTTACAACCAATATCGCAATGAATCTCCTTTGGTTATCTCGTTCTTCAGATCTGAAAATTATTTTTATTCATTTTTCTCTTGCTCTCAGACCCACCAGCCCATCCAGCCCATCTTGTCAGCTGGTCTTCTTTTCCGTTTGGAATCAATTTTCCTTGCTTCATGTTTTGCAATCTGATTCCTTTATTTTCCTTGTTGACGTCGTTTACATCCTAAATCGCCATCAGATTCAGTAGATCTGAAAATGGCTTTGACTGGGGAACTGACTTGTTTTCCAGATCTGAAAATTTTCTTTAATGATTTCCTTTTGATCTCAAACATACCCATTCTCCAGCTATCATTGCTCCAGCTCTAATCGCACACACATGCGGCCGCACGGTGACCGGTGTTGTCTGAAAATCAAATTTTGTTTATAAGAATATTTAGTTTGAATACCGTGATAAAGTACTCAAAAAATTTTTTTAATRAAGCTTCACGAATGAGAAATACACTAACCATTCCATGGAAATCGTAGTAGTTCACCCTTCCGTTGACCTCATTTTCGTCCAAGATTGCCTGAAGGTTCAGTGGATCTGAACAGGGTTTGGGGTACCAACCCTATTCAGTTCGCTGCCCTTATAAGTATCTGGAAAAAAATTTCAATGATCTGAAAGAGAAAATATTTGAAAAATATGAAACAAGAGTGCGTGAAGAAAAATGCAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTTCTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAGCAACGCTCTTTTAAAAAATTGATGTCAATACCTCTTTTTCTTATTTGTTTGTTATTATGCGCGTTTTCCCGCCAAAAAACTCGCGAGACCAAATTTGATCTACCACAAAAAATGAGGTGTGACAAGTCTAAAGCGCATTACGAAAATTTGTTCATTTTTAGTGAATGAAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCTTTTGATCTCAAACATAC</pcr_primer_p1>
		<pcr_primer_p2>ATCTTGGACGAAAATGAGGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTCCTTTTGATCTCAAACATACCCATTCTCCAGCTATCATTGCTCCAGCTCTAATCGCACACACATGCGGCCGCACGGTGACCGGTGTTGTCTGAAAATCAAATTTTGTTTATAAGAATATTTAGTTTGAATACCGTGATAAAGTACTCAAAAAATTTTTTTAATAAAGCTTCACGAATGAGAAATACACTAACCATTCCATGGAAATCGTAGTAGTTCACCCTTCCGTTGACCTCATTTTCGTCCAAGAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCCTTTTGATCTCAAACATACCCATTCTCCAGCTATCATTGCTCCAGCTCTAATCGCACACACATGCGGCCGCACGGTGACCGGTGTTGTCTGAAAATCAAATTTTGTTTATAAGAATATTTAGTTTGAATACCGTGATAAAGTACTCAAAAAATTTTTTTAATRAAGCTTCACGAATGAGAAATACACTAACCATTCCATGGAAATCGTAGTAGTTCACCCTTCCGTTGACCTCATTTTCGTCCAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15457</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>474924</contig_pos>
        <strand>+</strand>
        <context>AGTTCACCCT[C/T]CCGTTGACCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAATGAGAAATACACTAACCATTCCATGGAAATCGTAGTAGTTCACCCT</left_flank>
        <right_flank>CCGTTGACCTCATTTTCGTCCAAGATTGCCTGAAGGTTCAGTGGATCTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCTTTGGTTATCTCGTTCTTCAGATCTGAAAATTATTTTTATTCATTTTTCTCTTGCTCTCAGACCCACCAGCCCATCCAGCCCATCTTGTCAGCTGGTCTTCTTTTCCGTTTGGAATCAATTTTCCTTGCTTCATGTTTTGCAATCTGATTCCTTTATTTTCCTTGTTGACGTCGTTTACATCCTAAATCGCCATCAGATTCAGTAGATCTGAAAATGGCTTTGACTGGGGAACTGACTTGTTTTCCAGATCTGAAAATTTTCTTTAATGATTTCCTTTTGATCTCAAACATACCCATTCTCCAGCTATCATTGCTCCAGCTCTAATCGCACACACATGCGGCCGCACGGTGACCGGTGTTGTCTGAAAATCAAATTTTGTTTATAAGAATATTTAGTTTGAATACCGTGATAAAGTACTCAAAAAATTTTTTTAATAAAGCTTCACGAATGAGAAATACACTAACCATTCCATGGAAATCGTAGTAGTTCACCCTTCCGTTGACCTCATTTTCGTCCAAGATTGCCTGAAGGTTCAGTGGATCTGAACAGGGTTTGGGGTACCAACCCTATTCAGTTCGCTGCCCTTATAAGTATCTGGAAAAAAATTTCAATGATCTGAAAGAGAAAATATTTGAAAAATATGAAACAAGAGTGCGTGAAGAAAAATGCAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTTCTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAGCAACGCTCTTTTAAAAAATTGATGTCAATACCTCTTTTTCTTATTTGTTTGTTATTATGCGCGTTTTCCCGCCAAAAAACTCGCGAGACCAAATTTGATCTACCACAAAAAATGAGGTGTGACAAGTCTAAAGCGCATTACGAAAATTTGTTCATTTTTAGTGAATGAAGATGGTTTCTAAAAACGCATAAATATCACATAAGAGAATTTTCAACGTGACAAAAAGCAAAA</canonical>
            <polymorphic>CTCCTTTGGTTATCTCGTTCTTCAGATCTGAAAATTATTTTTATTCATTTTTCTCTTGCTCTCAGACCCACCAGCCCATCCAGCCCATCTTGTCAGCTGGTCTTCTTTTCCGTTTGGAATCAATTTTCCTTGCTTCATGTTTTGCAATCTGATTCCTTTATTTTCCTTGTTGACGTCGTTTACATCCTAAATCGCCATCAGATTCAGTAGATCTGAAAATGGCTTTGACTGGGGAACTGACTTGTTTTCCAGATCTGAAAATTTTCTTTAATGATTTCCTTTTGATCTCAAACATACCCATTCTCCAGCTATCATTGCTCCAGCTCTAATCGCACACACATGCGGCCGCACGGTGACCGGTGTTGTCTGAAAATCAAATTTTGTTTATAAGAATATTTAGTTTGAATACCGTGATAAAGTACTCAAAAAATTTTTTTAATAAAGCTTCACGAATGAGAAATACACTAACCATTCCATGGAAATCGTAGTAGTTCACCCTYCCGTTGACCTCATTTTCGTCCAAGATTGCCTGAAGGTTCAGTGGATCTGAACAGGGTTTGGGGTACCAACCCTATTCAGTTCGCTGCCCTTATAAGTATCTGGAAAAAAATTTCAATGATCTGAAAGAGAAAATATTTGAAAAATATGAAACAAGAGTGCGTGAAGAAAAATGCAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTTCTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAGCAACGCTCTTTTAAAAAATTGATGTCAATACCTCTTTTTCTTATTTGTTTGTTATTATGCGCGTTTTCCCGCCAAAAAACTCGCGAGACCAAATTTGATCTACCACAAAAAATGAGGTGTGACAAGTCTAAAGCGCATTACGAAAATTTGTTCATTTTTAGTGAATGAAGATGGTTTCTAAAAACGCATAAATATCACATAAGAGAATTTTCAACGTGACAAAAAGCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCATTGCTCCAGCTCTAATC</pcr_primer_p1>
		<pcr_primer_p2>AAACCCTGTTCAGATCCACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATCATTGCTCCAGCTCTAATCGCACACACATGCGGCCGCACGGTGACCGGTGTTGTCTGAAAATCAAATTTTGTTTATAAGAATATTTAGTTTGAATACCGTGATAAAGTACTCAAAAAATTTTTTTAATAAAGCTTCACGAATGAGAAATACACTAACCATTCCATGGAAATCGTAGTAGTTCACCCTTCCGTTGACCTCATTTTCGTCCAAGATTGCCTGAAGGTTCAGTGGATCTGAACAGGGTTT</canonical_amplicon>
		<polymorphic_amplicon>TATCATTGCTCCAGCTCTAATCGCACACACATGCGGCCGCACGGTGACCGGTGTTGTCTGAAAATCAAATTTTGTTTATAAGAATATTTAGTTTGAATACCGTGATAAAGTACTCAAAAAATTTTTTTAATAAAGCTTCACGAATGAGAAATACACTAACCATTCCATGGAAATCGTAGTAGTTCACCCTYCCGTTGACCTCATTTTCGTCCAAGATTGCCTGAAGGTTCAGTGGATCTGAACAGGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15458</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>475010</contig_pos>
        <strand>+</strand>
        <context>TCAGTTCGCT[G/T]CCCTTATAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTCAGTGGATCTGAACAGGGTTTGGGGTACCAACCCTATTCAGTTCGCT</left_flank>
        <right_flank>CCCTTATAAGTATCTGGAAAAAAATTTCAATGATCTGAAAGAGAAAATAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTTGTCAGCTGGTCTTCTTTTCCGTTTGGAATCAATTTTCCTTGCTTCATGTTTTGCAATCTGATTCCTTTATTTTCCTTGTTGACGTCGTTTACATCCTAAATCGCCATCAGATTCAGTAGATCTGAAAATGGCTTTGACTGGGGAACTGACTTGTTTTCCAGATCTGAAAATTTTCTTTAATGATTTCCTTTTGATCTCAAACATACCCATTCTCCAGCTATCATTGCTCCAGCTCTAATCGCACACACATGCGGCCGCACGGTGACCGGTGTTGTCTGAAAATCAAATTTTGTTTATAAGAATATTTAGTTTGAATACCGTGATAAAGTACTCAAAAAATTTTTTTAATAAAGCTTCACGAATGAGAAATACACTAACCATTCCATGGAAATCGTAGTAGTTCACCCTTCCGTTGACCTCATTTTCGTCCAAGATTGCCTGAAGGTTCAGTGGATCTGAACAGGGTTTGGGGTACCAACCCTATTCAGTTCGCTGCCCTTATAAGTATCTGGAAAAAAATTTCAATGATCTGAAAGAGAAAATATTTGAAAAATATGAAACAAGAGTGCGTGAAGAAAAATGCAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTTCTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAGCAACGCTCTTTTAAAAAATTGATGTCAATACCTCTTTTTCTTATTTGTTTGTTATTATGCGCGTTTTCCCGCCAAAAAACTCGCGAGACCAAATTTGATCTACCACAAAAAATGAGGTGTGACAAGTCTAAAGCGCATTACGAAAATTTGTTCATTTTTAGTGAATGAAGATGGTTTCTAAAAACGCATAAATATCACATAAGAGAATTTTCAACGTGACAAAAAGCAAAAGGAAGAAAATGAGGTTCCTGTTATTTATCGGTTGCAAGCGCGTGAGTATGTTTGCATTCCCAACAGAGATGTCAGGAATTCCGACT</canonical>
            <polymorphic>ATCTTGTCAGCTGGTCTTCTTTTCCGTTTGGAATCAATTTTCCTTGCTTCATGTTTTGCAATCTGATTCCTTTATTTTCCTTGTTGACGTCGTTTACATCCTAAATCGCCATCAGATTCAGTAGATCTGAAAATGGCTTTGACTGGGGAACTGACTTGTTTTCCAGATCTGAAAATTTTCTTTAATGATTTCCTTTTGATCTCAAACATACCCATTCTCCAGCTATCATTGCTCCAGCTCTAATCGCACACACATGCGGCCGCACGGTGACCGGTGTTGTCTGAAAATCAAATTTTGTTTATAAGAATATTTAGTTTGAATACCGTGATAAAGTACTCAAAAAATTTTTTTAATAAAGCTTCACGAATGAGAAATACACTAACCATTCCATGGAAATCGTAGTAGTTCACCCTTCCGTTGACCTCATTTTCGTCCAAGATTGCCTGAAGGTTCAGTGGATCTGAACAGGGTTTGGGGTACCAACCCTATTCAGTTCGCTKCCCTTATAAGTATCTGGAAAAAAATTTCAATGATCTGAAAGAGAAAATATTTGAAAAATATGAAACAAGAGTGCGTGAAGAAAAATGCAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTTCTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAGCAACGCTCTTTTAAAAAATTGATGTCAATACCTCTTTTTCTTATTTGTTTGTTATTATGCGCGTTTTCCCGCCAAAAAACTCGCGAGACCAAATTTGATCTACCACAAAAAATGAGGTGTGACAAGTCTAAAGCGCATTACGAAAATTTGTTCATTTTTAGTGAATGAAGATGGTTTCTAAAAACGCATAAATATCACATAAGAGAATTTTCAACGTGACAAAAAGCAAAAGGAAGAAAATGAGGTTCCTGTTATTTATCGGTTGCAAGCGCGTGAGTATGTTTGCATTCCCAACAGAGATGTCAGGAATTCCGACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 259 241</canonical_bands>
                <polymorphic_bands>741 259</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAAGGTTCAGTGGATCTG</pcr_primer_p1>
		<pcr_primer_p2>GCTGGTTTTGATTTTCTTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CTGAAGGTTCAGTGGATCTGAACAGGGTTTGGGGTACCAACCCTATTCAGTTCGCTGCCCTTATAAGTATCTGGAAAAAAATTTCAATGATCTGAAAGAGAAAATATTTGAAAAATATGAAACAAGAGTGCGTGAAGAAAAATGCAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTTCTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAGC</canonical_amplicon>
		<polymorphic_amplicon>CTGAAGGTTCAGTGGATCTGAACAGGGTTTGGGGTACCAACCCTATTCAGTTCGCTKCCCTTATAAGTATCTGGAAAAAAATTTCAATGATCTGAAAGAGAAAATATTTGAAAAATATGAAACAAGAGTGCGTGAAGAAAAATGCAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTTCTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15459</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>475045</contig_pos>
        <strand></strand>
        <context>TTTCAATGAT[C/T]TGAAAGAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTATTCAGTTCGCTGCCCTTATAAGTATCTGGAAAAAAATTTCAATGAT</left_flank>
        <right_flank>TGAAAGAGAAAATATTTGAAAAATATGAAACAAGAGTGCGTGAAGAAAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTCCTTGCTTCATGTTTTGCAATCTGATTCCTTTATTTTCCTTGTTGACGTCGTTTACATCCTAAATCGCCATCAGATTCAGTAGATCTGAAAATGGCTTTGACTGGGGAACTGACTTGTTTTCCAGATCTGAAAATTTTCTTTAATGATTTCCTTTTGATCTCAAACATACCCATTCTCCAGCTATCATTGCTCCAGCTCTAATCGCACACACATGCGGCCGCACGGTGACCGGTGTTGTCTGAAAATCAAATTTTGTTTATAAGAATATTTAGTTTGAATACCGTGATAAAGTACTCAAAAAATTTTTTTAATAAAGCTTCACGAATGAGAAATACACTAACCATTCCATGGAAATCGTAGTAGTTCACCCTTCCGTTGACCTCATTTTCGTCCAAGATTGCCTGAAGGTTCAGTGGATCTGAACAGGGTTTGGGGTACCAACCCTATTCAGTTCGCTGCCCTTATAAGTATCTGGAAAAAAATTTCAATGATCTGAAAGAGAAAATATTTGAAAAATATGAAACAAGAGTGCGTGAAGAAAAATGCAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTTCTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAGCAACGCTCTTTTAAAAAATTGATGTCAATACCTCTTTTTCTTATTTGTTTGTTATTATGCGCGTTTTCCCGCCAAAAAACTCGCGAGACCAAATTTGATCTACCACAAAAAATGAGGTGTGACAAGTCTAAAGCGCATTACGAAAATTTGTTCATTTTTAGTGAATGAAGATGGTTTCTAAAAACGCATAAATATCACATAAGAGAATTTTCAACGTGACAAAAAGCAAAAGGAAGAAAATGAGGTTCCTGTTATTTATCGGTTGCAAGCGCGTGAGTATGTTTGCATTCCCAACAGAGATGTCAGGAATTCCGACTTCCGACTTCCTACTTCCGGAAAATCAGTTTTACTT</canonical>
            <polymorphic>AATTTTCCTTGCTTCATGTTTTGCAATCTGATTCCTTTATTTTCCTTGTTGACGTCGTTTACATCCTAAATCGCCATCAGATTCAGTAGATCTGAAAATGGCTTTGACTGGGGAACTGACTTGTTTTCCAGATCTGAAAATTTTCTTTAATGATTTCCTTTTGATCTCAAACATACCCATTCTCCAGCTATCATTGCTCCAGCTCTAATCGCACACACATGCGGCCGCACGGTGACCGGTGTTGTCTGAAAATCAAATTTTGTTTATAAGAATATTTAGTTTGAATACCGTGATAAAGTACTCAAAAAATTTTTTTAATAAAGCTTCACGAATGAGAAATACACTAACCATTCCATGGAAATCGTAGTAGTTCACCCTTCCGTTGACCTCATTTTCGTCCAAGATTGCCTGAAGGTTCAGTGGATCTGAACAGGGTTTGGGGTACCAACCCTATTCAGTTCGCTGCCCTTATAAGTATCTGGAAAAAAATTTCAATGATYTGAAAGAGAAAATATTTGAAAAATATGAAACAAGAGTGCGTGAAGAAAAATGCAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTTCTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAGCAACGCTCTTTTAAAAAATTGATGTCAATACCTCTTTTTCTTATTTGTTTGTTATTATGCGCGTTTTCCCGCCAAAAAACTCGCGAGACCAAATTTGATCTACCACAAAAAATGAGGTGTGACAAGTCTAAAGCGCATTACGAAAATTTGTTCATTTTTAGTGAATGAAGATGGTTTCTAAAAACGCATAAATATCACATAAGAGAATTTTCAACGTGACAAAAAGCAAAAGGAAGAAAATGAGGTTCCTGTTATTTATCGGTTGCAAGCGCGTGAGTATGTTTGCATTCCCAACAGAGATGTCAGGAATTCCGACTTCCGACTTCCTACTTCCGGAAAATCAGTTTTACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>260 256 248 88 74 42 32</canonical_bands>
                <polymorphic_bands>322 260 256 88 42 32</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>361 180 112 74 58 50 42 41 32 29 14 7</canonical_bands>
                <polymorphic_bands>361 180 132 112 50 42 41 32 29 14 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAAGGTTCAGTGGATCTG</pcr_primer_p1>
		<pcr_primer_p2>GCTGGTTTTGATTTTCTTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CTGAAGGTTCAGTGGATCTGAACAGGGTTTGGGGTACCAACCCTATTCAGTTCGCTGCCCTTATAAGTATCTGGAAAAAAATTTCAATGATCTGAAAGAGAAAATATTTGAAAAATATGAAACAAGAGTGCGTGAAGAAAAATGCAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTTCTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAGC</canonical_amplicon>
		<polymorphic_amplicon>CTGAAGGTTCAGTGGATCTGAACAGGGTTTGGGGTACCAACCCTATTCAGTTCGCTGCCCTTATAAGTATCTGGAAAAAAATTTCAATGATYTGAAAGAGAAAATATTTGAAAAATATGAAACAAGAGTGCGTGAAGAAAAATGCAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTTCTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15460</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>475098</contig_pos>
        <strand>+</strand>
        <context>AAGAAAAATG[C/G]AATTCCGAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAGAGAAAATATTTGAAAAATATGAAACAAGAGTGCGTGAAGAAAAATG</left_flank>
        <right_flank>AATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTTCTGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCGTTTACATCCTAAATCGCCATCAGATTCAGTAGATCTGAAAATGGCTTTGACTGGGGAACTGACTTGTTTTCCAGATCTGAAAATTTTCTTTAATGATTTCCTTTTGATCTCAAACATACCCATTCTCCAGCTATCATTGCTCCAGCTCTAATCGCACACACATGCGGCCGCACGGTGACCGGTGTTGTCTGAAAATCAAATTTTGTTTATAAGAATATTTAGTTTGAATACCGTGATAAAGTACTCAAAAAATTTTTTTAATAAAGCTTCACGAATGAGAAATACACTAACCATTCCATGGAAATCGTAGTAGTTCACCCTTCCGTTGACCTCATTTTCGTCCAAGATTGCCTGAAGGTTCAGTGGATCTGAACAGGGTTTGGGGTACCAACCCTATTCAGTTCGCTGCCCTTATAAGTATCTGGAAAAAAATTTCAATGATCTGAAAGAGAAAATATTTGAAAAATATGAAACAAGAGTGCGTGAAGAAAAATGCAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTTCTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAGCAACGCTCTTTTAAAAAATTGATGTCAATACCTCTTTTTCTTATTTGTTTGTTATTATGCGCGTTTTCCCGCCAAAAAACTCGCGAGACCAAATTTGATCTACCACAAAAAATGAGGTGTGACAAGTCTAAAGCGCATTACGAAAATTTGTTCATTTTTAGTGAATGAAGATGGTTTCTAAAAACGCATAAATATCACATAAGAGAATTTTCAACGTGACAAAAAGCAAAAGGAAGAAAATGAGGTTCCTGTTATTTATCGGTTGCAAGCGCGTGAGTATGTTTGCATTCCCAACAGAGATGTCAGGAATTCCGACTTCCGACTTCCTACTTCCGGAAAATCAGTTTTACTTCCAGCTTCAAACTCTCAAACTCCGCCAATGAAGTTTGGCAAGAAACGTTGCGA</canonical>
            <polymorphic>GTCGTTTACATCCTAAATCGCCATCAGATTCAGTAGATCTGAAAATGGCTTTGACTGGGGAACTGACTTGTTTTCCAGATCTGAAAATTTTCTTTAATGATTTCCTTTTGATCTCAAACATACCCATTCTCCAGCTATCATTGCTCCAGCTCTAATCGCACACACATGCGGCCGCACGGTGACCGGTGTTGTCTGAAAATCAAATTTTGTTTATAAGAATATTTAGTTTGAATACCGTGATAAAGTACTCAAAAAATTTTTTTAATAAAGCTTCACGAATGAGAAATACACTAACCATTCCATGGAAATCGTAGTAGTTCACCCTTCCGTTGACCTCATTTTCGTCCAAGATTGCCTGAAGGTTCAGTGGATCTGAACAGGGTTTGGGGTACCAACCCTATTCAGTTCGCTGCCCTTATAAGTATCTGGAAAAAAATTTCAATGATCTGAAAGAGAAAATATTTGAAAAATATGAAACAAGAGTGCGTGAAGAAAAATGSAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTTCTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAGCAACGCTCTTTTAAAAAATTGATGTCAATACCTCTTTTTCTTATTTGTTTGTTATTATGCGCGTTTTCCCGCCAAAAAACTCGCGAGACCAAATTTGATCTACCACAAAAAATGAGGTGTGACAAGTCTAAAGCGCATTACGAAAATTTGTTCATTTTTAGTGAATGAAGATGGTTTCTAAAAACGCATAAATATCACATAAGAGAATTTTCAACGTGACAAAAAGCAAAAGGAAGAAAATGAGGTTCCTGTTATTTATCGGTTGCAAGCGCGTGAGTATGTTTGCATTCCCAACAGAGATGTCAGGAATTCCGACTTCCGACTTCCTACTTCCGGAAAATCAGTTTTACTTCCAGCTTCAAACTCTCAAACTCCGCCAATGAAGTTTGGCAAGAAACGTTGCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>499 361 120 20</canonical_bands>
                <polymorphic_bands>860 120 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAAGGTTCAGTGGATCTG</pcr_primer_p1>
		<pcr_primer_p2>GCTGGTTTTGATTTTCTTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CTGAAGGTTCAGTGGATCTGAACAGGGTTTGGGGTACCAACCCTATTCAGTTCGCTGCCCTTATAAGTATCTGGAAAAAAATTTCAATGATCTGAAAGAGAAAATATTTGAAAAATATGAAACAAGAGTGCGTGAAGAAAAATGCAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTTCTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAGC</canonical_amplicon>
		<polymorphic_amplicon>CTGAAGGTTCAGTGGATCTGAACAGGGTTTGGGGTACCAACCCTATTCAGTTCGCTGCCCTTATAAGTATCTGGAAAAAAATTTCAATGATCTGAAAGAGAAAATATTTGAAAAATATGAAACAAGAGTGCGTGAAGAAAAATGSAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTTCTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15461</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>475143</contig_pos>
        <strand>+</strand>
        <context>AAATAAAATT[C/T]CTGAAAACCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATGCAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATT</left_flank>
        <right_flank>CTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGCTTTGACTGGGGAACTGACTTGTTTTCCAGATCTGAAAATTTTCTTTAATGATTTCCTTTTGATCTCAAACATACCCATTCTCCAGCTATCATTGCTCCAGCTCTAATCGCACACACATGCGGCCGCACGGTGACCGGTGTTGTCTGAAAATCAAATTTTGTTTATAAGAATATTTAGTTTGAATACCGTGATAAAGTACTCAAAAAATTTTTTTAATAAAGCTTCACGAATGAGAAATACACTAACCATTCCATGGAAATCGTAGTAGTTCACCCTTCCGTTGACCTCATTTTCGTCCAAGATTGCCTGAAGGTTCAGTGGATCTGAACAGGGTTTGGGGTACCAACCCTATTCAGTTCGCTGCCCTTATAAGTATCTGGAAAAAAATTTCAATGATCTGAAAGAGAAAATATTTGAAAAATATGAAACAAGAGTGCGTGAAGAAAAATGCAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTTCTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAGCAACGCTCTTTTAAAAAATTGATGTCAATACCTCTTTTTCTTATTTGTTTGTTATTATGCGCGTTTTCCCGCCAAAAAACTCGCGAGACCAAATTTGATCTACCACAAAAAATGAGGTGTGACAAGTCTAAAGCGCATTACGAAAATTTGTTCATTTTTAGTGAATGAAGATGGTTTCTAAAAACGCATAAATATCACATAAGAGAATTTTCAACGTGACAAAAAGCAAAAGGAAGAAAATGAGGTTCCTGTTATTTATCGGTTGCAAGCGCGTGAGTATGTTTGCATTCCCAACAGAGATGTCAGGAATTCCGACTTCCGACTTCCTACTTCCGGAAAATCAGTTTTACTTCCAGCTTCAAACTCTCAAACTCCGCCAATGAAGTTTGGCAAGAAACGTTGCGAAATGTGTTCATTTTTGATAAGAAAAATCAGAAAATGTTCAAAATT</canonical>
            <polymorphic>TGGCTTTGACTGGGGAACTGACTTGTTTTCCAGATCTGAAAATTTTCTTTAATGATTTCCTTTTGATCTCAAACATACCCATTCTCCAGCTATCATTGCTCCAGCTCTAATCGCACACACATGCGGCCGCACGGTGACCGGTGTTGTCTGAAAATCAAATTTTGTTTATAAGAATATTTAGTTTGAATACCGTGATAAAGTACTCAAAAAATTTTTTTAATAAAGCTTCACGAATGAGAAATACACTAACCATTCCATGGAAATCGTAGTAGTTCACCCTTCCGTTGACCTCATTTTCGTCCAAGATTGCCTGAAGGTTCAGTGGATCTGAACAGGGTTTGGGGTACCAACCCTATTCAGTTCGCTGCCCTTATAAGTATCTGGAAAAAAATTTCAATGATCTGAAAGAGAAAATATTTGAAAAATATGAAACAAGAGTGCGTGAAGAAAAATGCAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTYCTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAGCAACGCTCTTTTAAAAAATTGATGTCAATACCTCTTTTTCTTATTTGTTTGTTATTATGCGCGTTTTCCCGCCAAAAAACTCGCGAGACCAAATTTGATCTACCACAAAAAATGAGGTGTGACAAGTCTAAAGCGCATTACGAAAATTTGTTCATTTTTAGTGAATGAAGATGGTTTCTAAAAACGCATAAATATCACATAAGAGAATTTTCAACGTGACAAAAAGCAAAAGGAAGAAAATGAGGTTCCTGTTATTTATCGGTTGCAAGCGCGTGAGTATGTTTGCATTCCCAACAGAGATGTCAGGAATTCCGACTTCCGACTTCCTACTTCCGGAAAATCAGTTTTACTTCCAGCTTCAAACTCTCAAACTCCGCCAATGAAGTTTGGCAAGAAACGTTGCGAAATGTGTTCATTTTTGATAAGAAAAATCAGAAAATGTTCAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>180 146 143 117 106 102 61 53 52 40</canonical_bands>
                <polymorphic_bands>252 180 143 117 102 61 53 52 40</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>361 180 114 112 74 58 41 37 16 7</canonical_bands>
                <polymorphic_bands>402 180 114 112 74 58 37 16 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAGAGTGCGTGAAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTAGACTTGTCACACCTCATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACAAGAGTGCGTGAAGAAAAATGCAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTTCTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAGCAACGCTCTTTTAAAAAATTGATGTCAATACCTCTTTTTCTTATTTGTTTGTTATTATGCGCGTTTTCCCGCCAAAAAACTCGCGAGACCAAATTTGATCTACCACAAAAAATGAGGTGTGACAAGTCTAAA</canonical_amplicon>
		<polymorphic_amplicon>ACAAGAGTGCGTGAAGAAAAATGCAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTYCTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAGCAACGCTCTTTTAAAAAATTGATGTCAATACCTCTTTTTCTTATTTGTTTGTTATTATGCGCGTTTTCCCGCCAAAAAACTCGCGAGACCAAATTTGATCTACCACAAAAAATGAGGTGTGACAAGTCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15462</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>475378</contig_pos>
        <strand>+</strand>
        <context>TTTCTAAAAA[A/C]GCATAAATAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCATTACGAAAATTTGTTCATTTTTAGTGAATGAAGATGGTTTCTAAAAA</left_flank>
        <right_flank>GCATAAATATCACATAAGAGAATTTTCAACGTGACAAAAAGCAAAAGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAAATACACTAACCATTCCATGGAAATCGTAGTAGTTCACCCTTCCGTTGACCTCATTTTCGTCCAAGATTGCCTGAAGGTTCAGTGGATCTGAACAGGGTTTGGGGTACCAACCCTATTCAGTTCGCTGCCCTTATAAGTATCTGGAAAAAAATTTCAATGATCTGAAAGAGAAAATATTTGAAAAATATGAAACAAGAGTGCGTGAAGAAAAATGCAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTTCTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAGCAACGCTCTTTTAAAAAATTGATGTCAATACCTCTTTTTCTTATTTGTTTGTTATTATGCGCGTTTTCCCGCCAAAAAACTCGCGAGACCAAATTTGATCTACCACAAAAAATGAGGTGTGACAAGTCTAAAGCGCATTACGAAAATTTGTTCATTTTTAGTGAATGAAGATGGTTTCTAAAAACGCATAAATATCACATAAGAGAATTTTCAACGTGACAAAAAGCAAAAGGAAGAAAATGAGGTTCCTGTTATTTATCGGTTGCAAGCGCGTGAGTATGTTTGCATTCCCAACAGAGATGTCAGGAATTCCGACTTCCGACTTCCTACTTCCGGAAAATCAGTTTTACTTCCAGCTTCAAACTCTCAAACTCCGCCAATGAAGTTTGGCAAGAAACGTTGCGAAATGTGTTCATTTTTGATAAGAAAAATCAGAAAATGTTCAAAATTTGCGCCAATACCATAAATTATGCTCCAAAATAACAGTAGGCTATTAAAAAAATTGAAAATTTTAAAGTTTACTTCCGACTTCCGACTTCCAACTAACTACTTCCTACTTCCGGGCATTTGGTCACTTCCGACTTCCGACTTCCTAGTTCAAAATGTAACTTCCAACTTTCTAATTCCGACTTCCGAGTTCAAAAATTTTACTTCCTGATATCTCTGGTACCATTCAGAATGTTCT</canonical>
            <polymorphic>GAGAAATACACTAACCATTCCATGGAAATCGTAGTAGTTCACCCTTCCGTTGACCTCATTTTCGTCCAAGATTGCCTGAAGGTTCAGTGGATCTGAACAGGGTTTGGGGTACCAACCCTATTCAGTTCGCTGCCCTTATAAGTATCTGGAAAAAAATTTCAATGATCTGAAAGAGAAAATATTTGAAAAATATGAAACAAGAGTGCGTGAAGAAAAATGCAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTTCTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAGCAACGCTCTTTTAAAAAATTGATGTCAATACCTCTTTTTCTTATTTGTTTGTTATTATGCGCGTTTTCCCGCCAAAAAACTCGCGAGACCAAATTTGATCTACCACAAAAAATGAGGTGTGACAAGTCTAAAGCGCATTACGAAAATTTGTTCATTTTTAGTGAATGAAGATGGTTTCTAAAAAMGCATAAATATCACATAAGAGAATTTTCAACGTGACAAAAAGCAAAAGGAAGAAAATGAGGTTCCTGTTATTTATCGGTTGCAAGCGCGTGAGTATGTTTGCATTCCCAACAGAGATGTCAGGAATTCCGACTTCCGACTTCCTACTTCCGGAAAATCAGTTTTACTTCCAGCTTCAAACTCTCAAACTCCGCCAATGAAGTTTGGCAAGAAACGTTGCGAAATGTGTTCATTTTTGATAAGAAAAATCAGAAAATGTTCAAAATTTGCGCCAATACCATAAATTATGCTCCAAAATAACAGTAGGCTATTAAAAAAATTGAAAATTTTAAAGTTTACTTCCGACTTCCGACTTCCAACTAACTACTTCCTACTTCCGGGCATTTGGTCACTTCCGACTTCCGACTTCCTAGTTCAAAATGTAACTTCCAACTTTCTAATTCCGACTTCCGAGTTCAAAAATTTTACTTCCTGATATCTCTGGTACCATTCAGAATGTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTGATGTCAATACCTCTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATAACAGGAACCTCATTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTGATGTCAATACCTCTTTTTCTTATTTGTTTGTTATTATGCGCGTTTTCCCGCCAAAAAACTCGCGAGACCAAATTTGATCTACCACAAAAAATGAGGTGTGACAAGTCTAAAGCGCATTACGAAAATTTGTTCATTTTTAGTGAATGAAGATGGTTTCTAAAAACGCATAAATATCACATAAGAGAATTTTCAACGTGACAAAAAGCAAAAGGAAGAAAATGAGGTTCCTGTTATTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTGATGTCAATACCTCTTTTTCTTATTTGTTTGTTATTATGCGCGTTTTCCCGCCAAAAAACTCGCGAGACCAAATTTGATCTACCACAAAAAATGAGGTGTGACAAGTCTAAAGCGCATTACGAAAATTTGTTCATTTTTAGTGAATGAAGATGGTTTCTAAAAAMGCATAAATATCACATAAGAGAATTTTCAACGTGACAAAAAGCAAAAGGAAGAAAATGAGGTTCCTGTTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15463</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>479383</contig_pos>
        <strand>+</strand>
        <context>AAGAGGAAGT[C/G]AATTTTTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAGTAAGGGAAGGTGTAGGTATGCTAAGCTATTGGTGTTAAAGAGGAAGT</left_flank>
        <right_flank>AATTTTTTGAATTACTTACCGATCTCTGTTGTTCGATGGAGCAACTGGAT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGTGATAAACTGATAAATTTCAGTTAAAACTATGATGAACATTTGGCTCTAGTTGGTTTTTTTGAATTAACATTTTTTGGGCTAAAAAATAATTTAAATTTTGAAGAAATTTTTGGATTTCAATGTTTCTAAATATTTTAGATATCTAAAATATTCTTTAACATTTATATTATTTTTAATCTAAAAGGAACTGAAATGATGTGATACAAAGTTTTCCTTTTACTGCATATGAACTTCCGAACCTCTTTCCAAGGCATCTTTATAATTGATCATATTTTTTTCATAGAATAAGAAATCAAACCACACGCAATTCCACACGTTATTAGAAGATCAAAGAAGTATTAGAAAAAACAGAATTTTACCCCACCTGAGCACTCGGCCACTAGCTTTTCCAGACCGTGGCTTGTACGGTGGCACGCTGTAATTGAGAAAATGGATTAGTGATCACAGTAAGGGAAGGTGTAGGTATGCTAAGCTATTGGTGTTAAAGAGGAAGTGAATTTTTTGAATTACTTACCGATCTCTGTTGTTCGATGGAGCAACTGGATTGGGACTTGGAGTGCAACTCATTGACAACGCTTCTTCATATGTCGGCAACTCCTCTTCCCTTGCTCCGAATACCTGAAACAATATATTTTATTTTTGTTCATCCTGCTAGCTCATTGAACACTCACATTGAGTTCATGTGCCAATGTGGTTATATAAATCGGAAGCACATTATGACGGTCCGCTTCATTTGTGGAAGCTGCACGGTTGATTGCTGCTGTTATTAGTGCCTAGAAAATTATAAACATCTGGCAGGTCAAATCTTGGTTGGTCCACTTTTTGTAGAAATATACAAAAACCTAACACATGTTTCAAAGTTTCGTTTCCATGAAGCTGCTTCCAAGTAGAGCGTAGCGGATAAAACATACATATGAATATGTATATACCAGTTAGGAAGAAGTGTCTAATCCGACTAAAGCGTACCTGTCTTCGTCTCTGCCTTTTCAATTCAA</canonical>
            <polymorphic>AAAGTGATAAACTGATAAATTTCAGTTAAAACTATGATGAACATTTGGCTCTAGTTGGTTTTTTTGAATTAACATTTTTTGGGCTAAAAAATAATTTAAATTTTGAAGAAATTTTTGGATTTCAATGTTTCTAAATATTTTAGATATCTAAAATATTCTTTAACATTTATATTATTTTTAATCTAAAAGGAACTGAAATGATGTGATACAAAGTTTTCCTTTTACTGCATATGAACTTCCGAACCTCTTTCCAAGGCATCTTTATAATTGATCATATTTTTTTCATAGAATAAGAAATCAAACCACACGCAATTCCACACGTTATTAGAAGATCAAAGAAGTATTAGAAAAAACAGAATTTTACCCCACCTGAGCACTCGGCCACTAGCTTTTCCAGACCGTGGCTTGTACGGTGGCACGCTGTAATTGAGAAAATGGATTAGTGATCACAGTAAGGGAAGGTGTAGGTATGCTAAGCTATTGGTGTTAAAGAGGAAGTSAATTTTTTGAATTACTTACCGATCTCTGTTGTTCGATGGAGCAACTGGATTGGGACTTGGAGTGCAACTCATTGACAACGCTTCTTCATATGTCGGCAACTCCTCTTCCCTTGCTCCGAATACCTGAAACAATATATTTTATTTTTGTTCATCCTGCTAGCTCATTGAACACTCACATTGAGTTCATGTGCCAATGTGGTTATATAAATCGGAAGCACATTATGACGGTCCGCTTCATTTGTGGAAGCTGCACGGTTGATTGCTGCTGTTATTAGTGCCTAGAAAATTATAAACATCTGGCAGGTCAAATCTTGGTTGGTCCACTTTTTGTAGAAATATACAAAAACCTAACACATGTTTCAAAGTTTCGTTTCCATGAAGCTGCTTCCAAGTAGAGCGTAGCGGATAAAACATACATATGAATATGTATATACCAGTTAGGAAGAAGTGTCTAATCCGACTAAAGCGTACCTGTCTTCGTCTCTGCCTTTTCAATTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>500 247 144 81 17 11</canonical_bands>
                <polymorphic_bands>644 247 81 17 11</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>199 107 100 97 64 50 49 46 30 27 26 25 22 19 19 15 15 14 12 10 9 8 8 8 6 4 4 3 2 2</canonical_bands>
                <polymorphic_bands>199 107 100 97 78 50 49 46 30 27 26 25 22 19 19 15 15 12 10 9 8 8 8 6 4 4 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGGATTAGTGATCACAGTAAGG</pcr_primer_p1>
		<pcr_primer_p2>AACTCAATGTGAGTGTTCAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGGATTAGTGATCACAGTAAGGGAAGGTGTAGGTATGCTAAGCTATTGGTGTTAAAGAGGAAGTGAATTTTTTGAATTACTTACCGATCTCTGTTGTTCGATGGAGCAACTGGATTGGGACTTGGAGTGCAACTCATTGACAACGCTTCTTCATATGTCGGCAACTCCTCTTCCCTTGCTCCGAATACCTGAAACAATATATTTTATTTTTGTTCATCCTGCTAGCTCATTGAACACTCACATTGAGTT</canonical_amplicon>
		<polymorphic_amplicon>ATGGATTAGTGATCACAGTAAGGGAAGGTGTAGGTATGCTAAGCTATTGGTGTTAAAGAGGAAGTSAATTTTTTGAATTACTTACCGATCTCTGTTGTTCGATGGAGCAACTGGATTGGGACTTGGAGTGCAACTCATTGACAACGCTTCTTCATATGTCGGCAACTCCTCTTCCCTTGCTCCGAATACCTGAAACAATATATTTTATTTTTGTTCATCCTGCTAGCTCATTGAACACTCACATTGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15464</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>479250</contig_pos>
        <strand>+</strand>
        <context>AATTTTACCC[C/T]ACCTGAGCAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACACGTTATTAGAAGATCAAAGAAGTATTAGAAAAAACAGAATTTTACCC</left_flank>
        <right_flank>ACCTGAGCACTCGGCCACTAGCTTTTCCAGACCGTGGCTTGTACGGTGGC</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTTATTTCGAAAATGTATAGTTTCCCAGATTTTTGCCAATTTCTGTAAAGCACCTGTTTTTTCCCGCTTTTAGTACAAAAACATATACTTGTTGAGCGGTACTCATTTTGTTCATTTTGAAAATTTAAAAAAGTGATAAACTGATAAATTTCAGTTAAAACTATGATGAACATTTGGCTCTAGTTGGTTTTTTTGAATTAACATTTTTTGGGCTAAAAAATAATTTAAATTTTGAAGAAATTTTTGGATTTCAATGTTTCTAAATATTTTAGATATCTAAAATATTCTTTAACATTTATATTATTTTTAATCTAAAAGGAACTGAAATGATGTGATACAAAGTTTTCCTTTTACTGCATATGAACTTCCGAACCTCTTTCCAAGGCATCTTTATAATTGATCATATTTTTTTCATAGAATAAGAAATCAAACCACACGCAATTCCACACGTTATTAGAAGATCAAAGAAGTATTAGAAAAAACAGAATTTTACCCCACCTGAGCACTCGGCCACTAGCTTTTCCAGACCGTGGCTTGTACGGTGGCACGCTGTAATTGAGAAAATGGATTAGTGATCACAGTAAGGGAAGGTGTAGGTATGCTAAGCTATTGGTGTTAAAGAGGAAGTGAATTTTTTGAATTACTTACCGATCTCTGTTGTTCGATGGAGCAACTGGATTGGGACTTGGAGTGCAACTCATTGACAACGCTTCTTCATATGTCGGCAACTCCTCTTCCCTTGCTCCGAATACCTGAAACAATATATTTTATTTTTGTTCATCCTGCTAGCTCATTGAACACTCACATTGAGTTCATGTGCCAATGTGGTTATATAAATCGGAAGCACATTATGACGGTCCGCTTCATTTGTGGAAGCTGCACGGTTGATTGCTGCTGTTATTAGTGCCTAGAAAATTATAAACATCTGGCAGGTCAAATCTTGGTTGGTCCACTTTTTGTAGAAATATACAAAAACCTAACACATGTTTCAAAGTT</canonical>
            <polymorphic>AAATTTTATTTCGAAAATGTATAGTTTCCCAGATTTTTGCCAATTTCTGTAAAGCACCTGTTTTTTCCCGCTTTTAGTACAAAAACATATACTTGTTGAGCGGTACTCATTTTGTTCATTTTGAAAATTTAAAAAAGTGATAAACTGATAAATTTCAGTTAAAACTATGATGAACATTTGGCTCTAGTTGGTTTTTTTGAATTAACATTTTTTGGGCTAAAAAATAATTTAAATTTTGAAGAAATTTTTGGATTTCAATGTTTCTAAATATTTTAGATATCTAAAATATTCTTTAACATTTATATTATTTTTAATCTAAAAGGAACTGAAATGATGTGATACAAAGTTTTCCTTTTACTGCATATGAACTTCCGAACCTCTTTCCAAGGCATCTTTATAATTGATCATATTTTTTTCATAGAATAAGAAATCAAACCACACGCAATTCCACACGTTATTAGAAGATCAAAGAAGTATTAGAAAAAACAGAATTTTACCCYACCTGAGCACTCGGCCACTAGCTTTTCCAGACCGTGGCTTGTACGGTGGCACGCTGTAATTGAGAAAATGGATTAGTGATCACAGTAAGGGAAGGTGTAGGTATGCTAAGCTATTGGTGTTAAAGAGGAAGTGAATTTTTTGAATTACTTACCGATCTCTGTTGTTCGATGGAGCAACTGGATTGGGACTTGGAGTGCAACTCATTGACAACGCTTCTTCATATGTCGGCAACTCCTCTTCCCTTGCTCCGAATACCTGAAACAATATATTTTATTTTTGTTCATCCTGCTAGCTCATTGAACACTCACATTGAGTTCATGTGCCAATGTGGTTATATAAATCGGAAGCACATTATGACGGTCCGCTTCATTTGTGGAAGCTGCACGGTTGATTGCTGCTGTTATTAGTGCCTAGAAAATTATAAACATCTGGCAGGTCAAATCTTGGTTGGTCCACTTTTTGTAGAAATATACAAAAACCTAACACATGTTTCAAAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>199 107 100 83 64 56 49 46 30 27 26 25 22 19 19 15 15 14 14 12 10 9 8 8 8 4 4 3 2 2</canonical_bands>
                <polymorphic_bands>199 107 100 83 64 57 56 46 30 27 26 25 22 19 19 15 15 14 14 12 10 9 8 8 4 4 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATGATGTGATACAAAGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TAATCCATTTTCTCAATTACAGC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAATGATGTGATACAAAGTTTTCCTTTTACTGCATATGAACTTCCGAACCTCTTTCCAAGGCATCTTTATAATTGATCATATTTTTTTCATAGAATAAGAAATCAAACCACACGCAATTCCACACGTTATTAGAAGATCAAAGAAGTATTAGAAAAAACAGAATTTTACCCCACCTGAGCACTCGGCCACTAGCTTTTCCAGACCGTGGCTTGTACGGTGGCACGCTGTAATTGAGAAAATGGATTA</canonical_amplicon>
		<polymorphic_amplicon>GAAATGATGTGATACAAAGTTTTCCTTTTACTGCATATGAACTTCCGAACCTCTTTCCAAGGCATCTTTATAATTGATCATATTTTTTTCATAGAATAAGAAATCAAACCACACGCAATTCCACACGTTATTAGAAGATCAAAGAAGTATTAGAAAAAACAGAATTTTACCCYACCTGAGCACTCGGCCACTAGCTTTTCCAGACCGTGGCTTGTACGGTGGCACGCTGTAATTGAGAAAATGGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15465</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>479102</contig_pos>
        <strand>+</strand>
        <context>CAAAGTTTTC[A/C]TTTTACTGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATATTATTTTTAATCTAAAAGGAACTGAAATGATGTGATACAAAGTTTTC</left_flank>
        <right_flank>TTTTACTGCATATGAACTTCCGAACCTCTTTCCAAGGCATCTTTATAATT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAGGTACGTAAAGTCTCAGTCAATGAGATATTTATAAAATCGCGTTTTTCAGTTGATTTTGACCAATTTAAAGAGTCTGGAACTGGAACGTTAGGCTTTCGATTACTTCGAATATTTTGAAAGGCGTAATACTGATTTAGATTGGAAATTTTATTTCGAAAATGTATAGTTTCCCAGATTTTTGCCAATTTCTGTAAAGCACCTGTTTTTTCCCGCTTTTAGTACAAAAACATATACTTGTTGAGCGGTACTCATTTTGTTCATTTTGAAAATTTAAAAAAGTGATAAACTGATAAATTTCAGTTAAAACTATGATGAACATTTGGCTCTAGTTGGTTTTTTTGAATTAACATTTTTTGGGCTAAAAAATAATTTAAATTTTGAAGAAATTTTTGGATTTCAATGTTTCTAAATATTTTAGATATCTAAAATATTCTTTAACATTTATATTATTTTTAATCTAAAAGGAACTGAAATGATGTGATACAAAGTTTTCCTTTTACTGCATATGAACTTCCGAACCTCTTTCCAAGGCATCTTTATAATTGATCATATTTTTTTCATAGAATAAGAAATCAAACCACACGCAATTCCACACGTTATTAGAAGATCAAAGAAGTATTAGAAAAAACAGAATTTTACCCCACCTGAGCACTCGGCCACTAGCTTTTCCAGACCGTGGCTTGTACGGTGGCACGCTGTAATTGAGAAAATGGATTAGTGATCACAGTAAGGGAAGGTGTAGGTATGCTAAGCTATTGGTGTTAAAGAGGAAGTGAATTTTTTGAATTACTTACCGATCTCTGTTGTTCGATGGAGCAACTGGATTGGGACTTGGAGTGCAACTCATTGACAACGCTTCTTCATATGTCGGCAACTCCTCTTCCCTTGCTCCGAATACCTGAAACAATATATTTTATTTTTGTTCATCCTGCTAGCTCATTGAACACTCACATTGAGTTCATGTGCCAATGTGGTTATATAAATCGGAAGCACA</canonical>
            <polymorphic>CAAAAGGTACGTAAAGTCTCAGTCAATGAGATATTTATAAAATCGCGTTTTTCAGTTGATTTTGACCAATTTAAAGAGTCTGGAACTGGAACGTTAGGCTTTCGATTACTTCGAATATTTTGAAAGGCGTAATACTGATTTAGATTGGAAATTTTATTTCGAAAATGTATAGTTTCCCAGATTTTTGCCAATTTCTGTAAAGCACCTGTTTTTTCCCGCTTTTAGTACAAAAACATATACTTGTTGAGCGGTACTCATTTTGTTCATTTTGAAAATTTAAAAAAGTGATAAACTGATAAATTTCAGTTAAAACTATGATGAACATTTGGCTCTAGTTGGTTTTTTTGAATTAACATTTTTTGGGCTAAAAAATAATTTAAATTTTGAAGAAATTTTTGGATTTCAATGTTTCTAAATATTTTAGATATCTAAAATATTCTTTAACATTTATATTATTTTTAATCTAAAAGGAACTGAAATGATGTGATACAAAGTTTTCMTTTTACTGCATATGAACTTCCGAACCTCTTTCCAAGGCATCTTTATAATTGATCATATTTTTTTCATAGAATAAGAAATCAAACCACACGCAATTCCACACGTTATTAGAAGATCAAAGAAGTATTAGAAAAAACAGAATTTTACCCCACCTGAGCACTCGGCCACTAGCTTTTCCAGACCGTGGCTTGTACGGTGGCACGCTGTAATTGAGAAAATGGATTAGTGATCACAGTAAGGGAAGGTGTAGGTATGCTAAGCTATTGGTGTTAAAGAGGAAGTGAATTTTTTGAATTACTTACCGATCTCTGTTGTTCGATGGAGCAACTGGATTGGGACTTGGAGTGCAACTCATTGACAACGCTTCTTCATATGTCGGCAACTCCTCTTCCCTTGCTCCGAATACCTGAAACAATATATTTTATTTTTGTTCATCCTGCTAGCTCATTGAACACTCACATTGAGTTCATGTGCCAATGTGGTTATATAAATCGGAAGCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAATTTTTGGATTTCAATGT</pcr_primer_p1>
		<pcr_primer_p2>TCTTTGATCTTCTAATAACGTGTG</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>AAGAAATTTTTGGATTTCAATGTTTCTAAATATTTTAGATATCTAAAATATTCTTTAACATTTATATTATTTTTAATCTAAAAGGAACTGAAATGATGTGATACAAAGTTTTCCTTTTACTGCATATGAACTTCCGAACCTCTTTCCAAGGCATCTTTATAATTGATCATATTTTTTTCATAGAATAAGAAATCAAACCACACGCAATTCCACACGTTATTAGAAGATCAAAGA</canonical_amplicon>
		<polymorphic_amplicon>AAGAAATTTTTGGATTTCAATGTTTCTAAATATTTTAGATATCTAAAATATTCTTTAACATTTATATTATTTTTAATCTAAAAGGAACTGAAATGATGTGATACAAAGTTTTCMTTTTACTGCATATGAACTTCCGAACCTCTTTCCAAGGCATCTTTATAATTGATCATATTTTTTTCATAGAATAAGAAATCAAACCACACGCAATTCCACACGTTATTAGAAGATCAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15512</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>479019</contig_pos>
        <strand></strand>
        <context>TGTTTCtaaa[T/G]attttagata</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AAAAAATAATTTAAATTTTGAAGAAATTTTTGGATTTCAATGTTTCTAAA</left_flank>
        <right_flank>ATTTTAGATATCTAAAATATTCTTTAACATTTATATTATTTTTAATCTAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAATGTTTTTCATTATCTCTCCAGCGCTTTATCAGTTGACAGATGTTTCATGTATTTTGAAGGAACATAGATTATTGTGCTCAAAAGGTACGTAAAGTCTCAGTCAATGAGATATTTATAAAATCGCGTTTTTCAGTTGATTTTGACCAATTTAAAGAGTCTGGAACTGGAACGTTAGGCTTTCGATTACTTCGAATATTTTGAAAGGCGTAATACTGATTTAGATTGGAAATTTTATTTCGAAAATGTATAGTTTCCCAGATTTTTGCCAATTTCTGTAAAGCACCTGTTTTTTCCCGCTTTTAGTACAAAAACATATACTTGTTGAGCGGTACTCATTTTGTTCATTTTGAAAATTTAAAAAAGTGATAAACTGATAAATTTCAGTTAAAACTATGATGAACATTTGGCTCTAGTTGGTTTTTTTGAATTAACATTTTTTGGGCTAAAAAATAATTTAAATTTTGAAGAAATTTTTGGATTTCAATGTTTCTAAATATTTTAGATATCTAAAATATTCTTTAACATTTATATTATTTTTAATCTAAAAGGAACTGAAATGATGTGATACAAAGTTTTCCTTTTACTGCATATGAACTTCCGAACCTCTTTCCAAGGCATCTTTATAATTGATCATATTTTTTTCATAGAATAAGAAATCAAACCACACGCAATTCCACACGTTATTAGAAGATCAAAGAAGTATTAGAAAAAACAGAATTTTACCCCACCTGAGCACTCGGCCACTAGCTTTTCCAGACCGTGGCTTGTACGGTGGCACGCTGTAATTGAGAAAATGGATTAGTGATCACAGTAAGGGAAGGTGTAGGTATGCTAAGCTATTGGTGTTAAAGAGGAAGTGAATTTTTTGAATTACTTACCGATCTCTGTTGTTCGATGGAGCAACTGGATTGGGACTTGGAGTGCAACTCATTGACAACGCTTCTTCATATGTCGGCAACTCCTCTTCCCTTGCTCCGAATACCTGAAACAATATA</canonical>
            <polymorphic>TGAAATGTTTTTCATTATCTCTCCAGCGCTTTATCAGTTGACAGATGTTTCATGTATTTTGAAGGAACATAGATTATTGTGCTCAAAAGGTACGTAAAGTCTCAGTCAATGAGATATTTATAAAATCGCGTTTTTCAGTTGATTTTGACCAATTTAAAGAGTCTGGAACTGGAACGTTAGGCTTTCGATTACTTCGAATATTTTGAAAGGCGTAATACTGATTTAGATTGGAAATTTTATTTCGAAAATGTATAGTTTCCCAGATTTTTGCCAATTTCTGTAAAGCACCTGTTTTTTCCCGCTTTTAGTACAAAAACATATACTTGTTGAGCGGTACTCATTTTGTTCATTTTGAAAATTTAAAAAAGTGATAAACTGATAAATTTCAGTTAAAACTATGATGAACATTTGGCTCTAGTTGGTTTTTTTGAATTAACATTTTTTGGGCTAAAAAATAATTTAAATTTTGAAGAAATTTTTGGATTTCAATGTTTCTAAAKATTTTAGATATCTAAAATATTCTTTAACATTTATATTATTTTTAATCTAAAAGGAACTGAAATGATGTGATACAAAGTTTTCCTTTTACTGCATATGAACTTCCGAACCTCTTTCCAAGGCATCTTTATAATTGATCATATTTTTTTCATAGAATAAGAAATCAAACCACACGCAATTCCACACGTTATTAGAAGATCAAAGAAGTATTAGAAAAAACAGAATTTTACCCCACCTGAGCACTCGGCCACTAGCTTTTCCAGACCGTGGCTTGTACGGTGGCACGCTGTAATTGAGAAAATGGATTAGTGATCACAGTAAGGGAAGGTGTAGGTATGCTAAGCTATTGGTGTTAAAGAGGAAGTGAATTTTTTGAATTACTTACCGATCTCTGTTGTTCGATGGAGCAACTGGATTGGGACTTGGAGTGCAACTCATTGACAACGCTTCTTCATATGTCGGCAACTCCTCTTCCCTTGCTCCGAATACCTGAAACAATATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>482 301 199 18</canonical_bands>
                <polymorphic_bands>482 319 199</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATACTTGTTGAGCGGTACTCAT</pcr_primer_p1>
		<pcr_primer_p2>CACATCATTTCAGTTCCTTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATACTTGTTGAGCGGTACTCATTTTGTTCATTTTGAAAATTTAAAAAAGTGATAAACTGATAAATTTCAGTTAAAACTATGATGAACATTTGGCTCTAGTTGGTTTTTTTGAATTAACATTTTTTGGGCTAAAAAATAATTTAAATTTTGAAGAAATTTTTGGATTTCAATGTTTCTAAATATTTTAGATATCTAAAATATTCTTTAACATTTATATTATTTTTAATCTAAAAGGAACTGAAATGATGTG</canonical_amplicon>
		<polymorphic_amplicon>TATACTTGTTGAGCGGTACTCATTTTGTTCATTTTGAAAATTTAAAAAAGTGATAAACTGATAAATTTCAGTTAAAACTATGATGAACATTTGGCTCTAGTTGGTTTTTTTGAATTAACATTTTTTGGGCTAAAAAATAATTTAAATTTTGAAGAAATTTTTGGATTTCAATGTTTCTAAAKATTTTAGATATCTAAAATATTCTTTAACATTTATATTATTTTTAATCTAAAAGGAACTGAAATGATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15517</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>478944</contig_pos>
        <strand>+</strand>
        <context>CTAGTTGGTT[A/T]TTTTGAATTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTGATAAATTTCAGTTAAAACTATGATGAACATTTGGCTCTAGTTGGTT</left_flank>
        <right_flank>TTTTGAATTAACATTTTTTGGGCTAAAAAATAATTTAAATTTTGAAGAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATGTTCTAATAGCCGCCCACCTATATCAATTTTCTAATTTTCTTCAGAAGATGACAAGACTTGGACAACTAATGAAATGTTTTTCATTATCTCTCCAGCGCTTTATCAGTTGACAGATGTTTCATGTATTTTGAAGGAACATAGATTATTGTGCTCAAAAGGTACGTAAAGTCTCAGTCAATGAGATATTTATAAAATCGCGTTTTTCAGTTGATTTTGACCAATTTAAAGAGTCTGGAACTGGAACGTTAGGCTTTCGATTACTTCGAATATTTTGAAAGGCGTAATACTGATTTAGATTGGAAATTTTATTTCGAAAATGTATAGTTTCCCAGATTTTTGCCAATTTCTGTAAAGCACCTGTTTTTTCCCGCTTTTAGTACAAAAACATATACTTGTTGAGCGGTACTCATTTTGTTCATTTTGAAAATTTAAAAAAGTGATAAACTGATAAATTTCAGTTAAAACTATGATGAACATTTGGCTCTAGTTGGTTTTTTTGAATTAACATTTTTTGGGCTAAAAAATAATTTAAATTTTGAAGAAATTTTTGGATTTCAATGTTTCTAAATATTTTAGATATCTAAAATATTCTTTAACATTTATATTATTTTTAATCTAAAAGGAACTGAAATGATGTGATACAAAGTTTTCCTTTTACTGCATATGAACTTCCGAACCTCTTTCCAAGGCATCTTTATAATTGATCATATTTTTTTCATAGAATAAGAAATCAAACCACACGCAATTCCACACGTTATTAGAAGATCAAAGAAGTATTAGAAAAAACAGAATTTTACCCCACCTGAGCACTCGGCCACTAGCTTTTCCAGACCGTGGCTTGTACGGTGGCACGCTGTAATTGAGAAAATGGATTAGTGATCACAGTAAGGGAAGGTGTAGGTATGCTAAGCTATTGGTGTTAAAGAGGAAGTGAATTTTTTGAATTACTTACCGATCTCTGTTGTTCGATGGAGCAACTGGATTGGGACTTGGA</canonical>
            <polymorphic>TAAATGTTCTAATAGCCGCCCACCTATATCAATTTTCTAATTTTCTTCAGAAGATGACAAGACTTGGACAACTAATGAAATGTTTTTCATTATCTCTCCAGCGCTTTATCAGTTGACAGATGTTTCATGTATTTTGAAGGAACATAGATTATTGTGCTCAAAAGGTACGTAAAGTCTCAGTCAATGAGATATTTATAAAATCGCGTTTTTCAGTTGATTTTGACCAATTTAAAGAGTCTGGAACTGGAACGTTAGGCTTTCGATTACTTCGAATATTTTGAAAGGCGTAATACTGATTTAGATTGGAAATTTTATTTCGAAAATGTATAGTTTCCCAGATTTTTGCCAATTTCTGTAAAGCACCTGTTTTTTCCCGCTTTTAGTACAAAAACATATACTTGTTGAGCGGTACTCATTTTGTTCATTTTGAAAATTTAAAAAAGTGATAAACTGATAAATTTCAGTTAAAACTATGATGAACATTTGGCTCTAGTTGGTTWTTTTGAATTAACATTTTTTGGGCTAAAAAATAATTTAAATTTTGAAGAAATTTTTGGATTTCAATGTTTCTAAATATTTTAGATATCTAAAATATTCTTTAACATTTATATTATTTTTAATCTAAAAGGAACTGAAATGATGTGATACAAAGTTTTCCTTTTACTGCATATGAACTTCCGAACCTCTTTCCAAGGCATCTTTATAATTGATCATATTTTTTTCATAGAATAAGAAATCAAACCACACGCAATTCCACACGTTATTAGAAGATCAAAGAAGTATTAGAAAAAACAGAATTTTACCCCACCTGAGCACTCGGCCACTAGCTTTTCCAGACCGTGGCTTGTACGGTGGCACGCTGTAATTGAGAAAATGGATTAGTGATCACAGTAAGGGAAGGTGTAGGTATGCTAAGCTATTGGTGTTAAAGAGGAAGTGAATTTTTTGAATTACTTACCGATCTCTGTTGTTCGATGGAGCAACTGGATTGGGACTTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATACTTGTTGAGCGGTACTCAT</pcr_primer_p1>
		<pcr_primer_p2>CACATCATTTCAGTTCCTTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATACTTGTTGAGCGGTACTCATTTTGTTCATTTTGAAAATTTAAAAAAGTGATAAACTGATAAATTTCAGTTAAAACTATGATGAACATTTGGCTCTAGTTGGTTTTTTTGAATTAACATTTTTTGGGCTAAAAAATAATTTAAATTTTGAAGAAATTTTTGGATTTCAATGTTTCTAAATATTTTAGATATCTAAAATATTCTTTAACATTTATATTATTTTTAATCTAAAAGGAACTGAAATGATGTG</canonical_amplicon>
		<polymorphic_amplicon>TATACTTGTTGAGCGGTACTCATTTTGTTCATTTTGAAAATTTAAAAAAGTGATAAACTGATAAATTTCAGTTAAAACTATGATGAACATTTGGCTCTAGTTGGTTWTTTTGAATTAACATTTTTTGGGCTAAAAAATAATTTAAATTTTGAAGAAATTTTTGGATTTCAATGTTTCTAAATATTTTAGATATCTAAAATATTCTTTAACATTTATATTATTTTTAATCTAAAAGGAACTGAAATGATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15518</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>583475</contig_pos>
        <strand>+</strand>
        <context>ACTTACCAAA[A/G]TTTCATCTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACACTTTTTCCATATGTCTTTATATTTTAAAATTCACAACTTACCAAA</left_flank>
        <right_flank>TTTCATCTTGTTTTTTTCAATTTCTCCAAAGATATCTATTTTTTTTTCTT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTCAAATGGAATGCGTTTGTCACCGATTCCAGCGTCTTAAGTTTATCTGCTACATTGCATACCAAATTTTCAGAAGGTTCGAAACTTTCCCTATGGTTCATGATAAATCTTTGATAAGACTTTGAAATAAAAGTTTGTCAAACCTTGTAGTTATAAATTAGTTTGTTGATCGAAACCGTATGAAAAGCTCCCTGAATGTAAACAGAAGTACACAAATGCATTAAGAGTTAATAGAAAATGAAAAAAAGAGGAGTCAATGCAGAAATTATGAATTATTGCTAATATTCCCGTATTCTTTACCACCCTCTGAGTGAAATCTCACTTTTTTCTGAAACATATTTTTTTCAAGAAAGCTGGCATTATTAGGATCTCGTCTGACCTGTTAGAATGAACGATATGTTAATAATGAAAATTTGAATGTTAAGATAATAGAAACGACGCATTTGAAAACACTTTTTCCATATGTCTTTATATTTTAAAATTCACAACTTACCAAAGTTTCATCTTGTTTTTTTCAATTTCTCCAAAGATATCTATTTTTTTTTCTTGCGTGCCCATACCACTACAACTATTTCAATATTCATAACAAACATAGAAATCTGTCTTCCCTCGTGCTCCCTCATCCGCAATTTCCCATGTTTCAAAATTCTGGTATTCAAGAATTGAGAAAAAAAATTTTAGGCAGATAAAAATCTTTGGTATATGAAAAGACTTTTTTTTTTACTTTTCCGCACTCATAAAAAAGTACGTGTTCATCCATATTCTTCTGTCTTTCCGTGCTCCACCACTCCCTCGGTCGTTTTTCTTAGTTTCCCCGATAAGACGTTCTCTAATATACTGCATCGTCTCACCACTTTGTACAATCCATTTAGTGTTTTTGTTGGTAGGGAGAAAATGAAAGGAAGGAAAAAATAAAGAATAAGAACGCTTATTTCGAATGCAAAATTTTCTTATGCTTCATCGTGAAATATTGGTTTGTTTTTGGGGGAAGGGGAAGA</canonical>
            <polymorphic>CTTTCAAATGGAATGCGTTTGTCACCGATTCCAGCGTCTTAAGTTTATCTGCTACATTGCATACCAAATTTTCAGAAGGTTCGAAACTTTCCCTATGGTTCATGATAAATCTTTGATAAGACTTTGAAATAAAAGTTTGTCAAACCTTGTAGTTATAAATTAGTTTGTTGATCGAAACCGTATGAAAAGCTCCCTGAATGTAAACAGAAGTACACAAATGCATTAAGAGTTAATAGAAAATGAAAAAAAGAGGAGTCAATGCAGAAATTATGAATTATTGCTAATATTCCCGTATTCTTTACCACCCTCTGAGTGAAATCTCACTTTTTTCTGAAACATATTTTTTTCAAGAAAGCTGGCATTATTAGGATCTCGTCTGACCTGTTAGAATGAACGATATGTTAATAATGAAAATTTGAATGTTAAGATAATAGAAACGACGCATTTGAAAACACTTTTTCCATATGTCTTTATATTTTAAAATTCACAACTTACCAAARTTTCATCTTGTTTTTTTCAATTTCTCCAAAGATATCTATTTTTTTTTCTTGCGTGCCCATACCACTACAACTATTTCAATATTCATAACAAACATAGAAATCTGTCTTCCCTCGTGCTCCCTCATCCGCAATTTCCCATGTTTCAAAATTCTGGTATTCAAGAATTGAGAAAAAAAATTTTAGGCAGATAAAAATCTTTGGTATATGAAAAGACTTTTTTTTTTACTTTTCCGCACTCATAAAAAAGTACGTGTTCATCCATATTCTTCTGTCTTTCCGTGCTCCACCACTCCCTCGGTCGTTTTTCTTAGTTTCCCCGATAAGACGTTCTCTAATATACTGCATCGTCTCACCACTTTGTACAATCCATTTAGTGTTTTTGTTGGTAGGGAGAAAATGAAAGGAAGGAAAAAATAAAGAATAAGAACGCTTATTTCGAATGCAAAATTTTCTTATGCTTCATCGTGAAATATTGGTTTGTTTTTGGGGGAAGGGGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTATTAGGATCTCGTCTGACCT</pcr_primer_p1>
		<pcr_primer_p2>GGAAGACAGATTTCTATGTTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTATTAGGATCTCGTCTGACCTGTTAGAATGAACGATATGTTAATAATGAAAATTTGAATGTTAAGATAATAGAAACGACGCATTTGAAAACACTTTTTCCATATGTCTTTATATTTTAAAATTCACAACTTACCAAAGTTTCATCTTGTTTTTTTCAATTTCTCCAAAGATATCTATTTTTTTTTCTTGCGTGCCCATACCACTACAACTATTTCAATATTCATAACAAACATAGAAATCTGTCTTCC</canonical_amplicon>
		<polymorphic_amplicon>ATTATTAGGATCTCGTCTGACCTGTTAGAATGAACGATATGTTAATAATGAAAATTTGAATGTTAAGATAATAGAAACGACGCATTTGAAAACACTTTTTCCATATGTCTTTATATTTTAAAATTCACAACTTACCAAARTTTCATCTTGTTTTTTTCAATTTCTCCAAAGATATCTATTTTTTTTTCTTGCGTGCCCATACCACTACAACTATTTCAATATTCATAACAAACATAGAAATCTGTCTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15519</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>598636</contig_pos>
        <strand>+</strand>
        <context>CTTGAGAATT[G/T]TTTTCTCATT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGCTGCCAGAAATCGAAATCTCAACGTTTAAAATATACACCTTGAGAATT</left_flank>
        <right_flank>TTTTCTCATTTTCTTCTTTTCTGTTCCCCAATACTGAGAAAACTATATTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGAGCCCTTTTGATTCTGTGCCGAACTTGATAGAGAGTGAAAATGGAAAAGAATGGGAAAAAAAGAAAAAAGAGAGAAGAACTCCTTTTCACTGTGCATTCTAAAAATAATCCCGGAAGAAAAATGAAGTGAGCACGGAGCAACACTTTGCATGGTGCTTTTTTAGGTGTGGCGTGTTGTGATAAACTCTGAACACGATTAATTTTTCATAAATGACCTAGTGAGTGATATCTCGTATCAATTCGTCTCGCATGAATCCGCAACCCACTCAGATCAAAGTATTTTGTAATTCGAAAAAAAATTTATTTGATAGGCAAAACTTTCAAAATGAAACAAAGCCACCGTTAAATGGCTAATTGAGGATTAAATAGGGACTTCCTTGAAAATGATAAGCCAGTGTTCAAAACTGAATATCCATCAAAAATAGTACATTTACAGTTTAATCTTTGCTGCCAGAAATCGAAATCTCAACGTTTAAAATATACACCTTGAGAATTTTTTTCTCATTTTCTTCTTTTCTGTTCCCCAATACTGAGAAAACTATATTGATAGCAATTTCTCTTTTTCCCGAATTGTCACGTTTTCATTCCTTTTACACAGGTTCCCACAGTACCTCATGTGGGAAATTTTCCCACAATTGTCACGTTTTTTCATTGATTAATTTGACTTATCACATTGGCTAGAAACGTGTAGTTTGCGATTCTACTTTTAGATACTGTAGAAAACTTGTGTGATGACGTCCAGGAGCAATTATCTCCGAATTTTGTGCTGTCAACATTTTTTCATGATTTAAGAAACATTAAGGCAACGATCATTGACGTCAAACTGTACAATTTCATGGTATATTCGGCATTTTGTTAGAAAGCAGTGTATAGTATATAATGTAACCGAAATTACAAGTTTTGAAGTTGTTGATCAAGAATTCCAACGATAATTGTTGAAATCTCGTGTTTGGGTATGCATTAAAACACGCCCACATTTTTTCCTTTAAGCGCCGC</canonical>
            <polymorphic>AAAGAGCCCTTTTGATTCTGTGCCGAACTTGATAGAGAGTGAAAATGGAAAAGAATGGGAAAAAAAGAAAAAAGAGAGAAGAACTCCTTTTCACTGTGCATTCTAAAAATAATCCCGGAAGAAAAATGAAGTGAGCACGGAGCAACACTTTGCATGGTGCTTTTTTAGGTGTGGCGTGTTGTGATAAACTCTGAACACGATTAATTTTTCATAAATGACCTAGTGAGTGATATCTCGTATCAATTCGTCTCGCATGAATCCGCAACCCACTCAGATCAAAGTATTTTGTAATTCGAAAAAAAATTTATTTGATAGGCAAAACTTTCAAAATGAAACAAAGCCACCGTTAAATGGCTAATTGAGGATTAAATAGGGACTTCCTTGAAAATGATAAGCCAGTGTTCAAAACTGAATATCCATCAAAAATAGTACATTTACAGTTTAATCTTTGCTGCCAGAAATCGAAATCTCAACGTTTAAAATATACACCTTGAGAATTKTTTTCTCATTTTCTTCTTTTCTGTTCCCCAATACTGAGAAAACTATATTGATAGCAATTTCTCTTTTTCCCGAATTGTCACGTTTTCATTCCTTTTACACAGGTTCCCACAGTACCTCATGTGGGAAATTTTCCCACAATTGTCACGTTTTTTCATTGATTAATTTGACTTATCACATTGGCTAGAAACGTGTAGTTTGCGATTCTACTTTTAGATACTGTAGAAAACTTGTGTGATGACGTCCAGGAGCAATTATCTCCGAATTTTGTGCTGTCAACATTTTTTCATGATTTAAGAAACATTAAGGCAACGATCATTGACGTCAAACTGTACAATTTCATGGTATATTCGGCATTTTGTTAGAAAGCAGTGTATAGTATATAATGTAACCGAAATTACAAGTTTTGAAGTTGTTGATCAAGAATTCCAACGATAATTGTTGAAATCTCGTGTTTGGGTATGCATTAAAACACGCCCACATTTTTTCCTTTAAGCGCCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>301 194 161 135 131 78</canonical_bands>
                <polymorphic_bands>325 301 161 135 78</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAATGGCTAATTGAGGATTAAA</pcr_primer_p1>
		<pcr_primer_p2>GTAAAAGGAATGAAAACGTGAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAAATGGCTAATTGAGGATTAAATAGGGACTTCCTTGAAAATGATAAGCCAGTGTTCAAAACTGAATATCCATCAAAAATAGTACATTTACAGTTTAATCTTTGCTGCCAGAAATCGAAATCTCAACGTTTAAAATATACACCTTGAGAATTTTTTTCTCATTTTCTTCTTTTCTGTTCCCCAATACTGAGAAAACTATATTGATAGCAATTTCTCTTTTTCCCGAATTGTCACGTTTTCATTCCTTTTAC</canonical_amplicon>
		<polymorphic_amplicon>TAAATGGCTAATTGAGGATTAAATAGGGACTTCCTTGAAAATGATAAGCCAGTGTTCAAAACTGAATATCCATCAAAAATAGTACATTTACAGTTTAATCTTTGCTGCCAGAAATCGAAATCTCAACGTTTAAAATATACACCTTGAGAATTKTTTTCTCATTTTCTTCTTTTCTGTTCCCCAATACTGAGAAAACTATATTGATAGCAATTTCTCTTTTTCCCGAATTGTCACGTTTTCATTCCTTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15520</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>598981</contig_pos>
        <strand>+</strand>
        <context>ATTTCATGGT[A/G]TATTCGGCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAACATTAAGGCAACGATCATTGACGTCAAACTGTACAATTTCATGGT</left_flank>
        <right_flank>TATTCGGCATTTTGTTAGAAAGCAGTGTATAGTATATAATGTAACCGAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTAAATGGCTAATTGAGGATTAAATAGGGACTTCCTTGAAAATGATAAGCCAGTGTTCAAAACTGAATATCCATCAAAAATAGTACATTTACAGTTTAATCTTTGCTGCCAGAAATCGAAATCTCAACGTTTAAAATATACACCTTGAGAATTTTTTTCTCATTTTCTTCTTTTCTGTTCCCCAATACTGAGAAAACTATATTGATAGCAATTTCTCTTTTTCCCGAATTGTCACGTTTTCATTCCTTTTACACAGGTTCCCACAGTACCTCATGTGGGAAATTTTCCCACAATTGTCACGTTTTTTCATTGATTAATTTGACTTATCACATTGGCTAGAAACGTGTAGTTTGCGATTCTACTTTTAGATACTGTAGAAAACTTGTGTGATGACGTCCAGGAGCAATTATCTCCGAATTTTGTGCTGTCAACATTTTTTCATGATTTAAGAAACATTAAGGCAACGATCATTGACGTCAAACTGTACAATTTCATGGTATATTCGGCATTTTGTTAGAAAGCAGTGTATAGTATATAATGTAACCGAAATTACAAGTTTTGAAGTTGTTGATCAAGAATTCCAACGATAATTGTTGAAATCTCGTGTTTGGGTATGCATTAAAACACGCCCACATTTTTTCCTTTAAGCGCCGCCCCTAAAATGCTCATTTTTGAAGTCTATAACACTGGTGGCGGGGAGTTTTTGGATTGGAGACAATAAACAAGGTCCTATTTTTCAAAACTGAAGATTTTCGATACTAATTACCGTAATCCTTTGATATAGATCCAGCTAATTTCTACCGTGAAACCTGTGACAAAAGGGCATCCTAGAATTTCGAGCTAACTTATATCGGCTCCTATCGAAATTATAAAAACGTTGTTGACTAATAAATTGTATATCAAAATATCACAAACATTCTATCAATTGGCACATTTTTGATATCATTTACAGCAAACAAGATAATTATCTCAAAGTGCATTTTCAACAGGTCCTGAAGG</canonical>
            <polymorphic>GTTAAATGGCTAATTGAGGATTAAATAGGGACTTCCTTGAAAATGATAAGCCAGTGTTCAAAACTGAATATCCATCAAAAATAGTACATTTACAGTTTAATCTTTGCTGCCAGAAATCGAAATCTCAACGTTTAAAATATACACCTTGAGAATTTTTTTCTCATTTTCTTCTTTTCTGTTCCCCAATACTGAGAAAACTATATTGATAGCAATTTCTCTTTTTCCCGAATTGTCACGTTTTCATTCCTTTTACACAGGTTCCCACAGTACCTCATGTGGGAAATTTTCCCACAATTGTCACGTTTTTTCATTGATTAATTTGACTTATCACATTGGCTAGAAACGTGTAGTTTGCGATTCTACTTTTAGATACTGTAGAAAACTTGTGTGATGACGTCCAGGAGCAATTATCTCCGAATTTTGTGCTGTCAACATTTTTTCATGATTTAAGAAACATTAAGGCAACGATCATTGACGTCAAACTGTACAATTTCATGGTRTATTCGGCATTTTGTTAGAAAGCAGTGTATAGTATATAATGTAACCGAAATTACAAGTTTTGAAGTTGTTGATCAAGAATTCCAACGATAATTGTTGAAATCTCGTGTTTGGGTATGCATTAAAACACGCCCACATTTTTTCCTTTAAGCGCCGCCCCTAAAATGCTCATTTTTGAAGTCTATAACACTGGTGGCGGGGAGTTTTTGGATTGGAGACAATAAACAAGGTCCTATTTTTCAAAACTGAAGATTTTCGATACTAATTACCGTAATCCTTTGATATAGATCCAGCTAATTTCTACCGTGAAACCTGTGACAAAAGGGCATCCTAGAATTTCGAGCTAACTTATATCGGCTCCTATCGAAATTATAAAAACGTTGTTGACTAATAAATTGTATATCAAAATATCACAAACATTCTATCAATTGGCACATTTTTGATATCATTTACAGCAAACAAGATAATTATCTCAAAGTGCATTTTCAACAGGTCCTGAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATTGGCTAGAAACGTGTAGT</pcr_primer_p1>
		<pcr_primer_p2>CTTGATCAACAACTTCAAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACATTGGCTAGAAACGTGTAGTTTGCGATTCTACTTTTAGATACTGTAGAAAACTTGTGTGATGACGTCCAGGAGCAATTATCTCCGAATTTTGTGCTGTCAACATTTTTTCATGATTTAAGAAACATTAAGGCAACGATCATTGACGTCAAACTGTACAATTTCATGGTATATTCGGCATTTTGTTAGAAAGCAGTGTATAGTATATAATGTAACCGAAATTACAAGTTTTGAAGTTGTTGATCAAG</canonical_amplicon>
		<polymorphic_amplicon>ACATTGGCTAGAAACGTGTAGTTTGCGATTCTACTTTTAGATACTGTAGAAAACTTGTGTGATGACGTCCAGGAGCAATTATCTCCGAATTTTGTGCTGTCAACATTTTTTCATGATTTAAGAAACATTAAGGCAACGATCATTGACGTCAAACTGTACAATTTCATGGTRTATTCGGCATTTTGTTAGAAAGCAGTGTATAGTATATAATGTAACCGAAATTACAAGTTTTGAAGTTGTTGATCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15521</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>706593</contig_pos>
        <strand>+</strand>
        <context>CTTTTGTATT[C/T]GATGAGACCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGTAATGCTCCAGCCTCAGCGTCTTCCGAAGCCTGACGACTTTTGTATT</left_flank>
        <right_flank>GATGAGACCTTTGGGAACCATGACAATTGCCAGCATTGCACAAAATCCAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAATATGACTGCGTTGACTTGGACTTTACTCTCGAACCCATTTATTTGTTTGTTTTCACAGTGAGTGGATAACAGAATTATTCAAACCGCGACCAATTTTTTCAGGTTCTCAATCCATCCGAAAACTTCGAATTTGGACAAATAACTTCTAAGAACTTATACATTCCTTTTCCTATGCTCAACACTCACCGTATATTGGAGAACGTATCAGTTACACTTCCGCGAAACTGCATAATCATGGAGAAATTCTAATGAATTTGGCAAACCTTTCTCAATCTAAACTCCACATTTCATTTTTTTAAATTTCATTTTGAAACAATTTATTTAATAAATATTCAACTGAACCCACTTTTACAGGAAACAAGATAAAAAGAAGTCCAGAAGAGATACAAAAAACAATAGGACATTCGTTTCACAGCTAATTGTCATCTTCGTCGTTTTCTTCAAGAAGTAATGCTCCAGCCTCAGCGTCTTCCGAAGCCTGACGACTTTTGTATTCGATGAGACCTTTGGGAACCATGACAATTGCCAGCATTGCACAAAATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACAATTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGTTTCACTTTACTCATATTTTTCTACCATTAATATGTCGTTGCAAGCAAAACTATGTTGATATGCAGAAATAGCCGAGAGAGCAAATACGCTCCACCGAGTTGCTATGGTGACTACTCTTGTTGCTGTGGTTACTAACCTCGTGACTTTGATTTTGCTGTATCAATTTTTTTTTGTTGCTTTTTATTCTGTGAAACTTCTGTAACAATGAATCGTGAT</canonical>
            <polymorphic>TAAATATGACTGCGTTGACTTGGACTTTACTCTCGAACCCATTTATTTGTTTGTTTTCACAGTGAGTGGATAACAGAATTATTCAAACCGCGACCAATTTTTTCAGGTTCTCAATCCATCCGAAAACTTCGAATTTGGACAAATAACTTCTAAGAACTTATACATTCCTTTTCCTATGCTCAACACTCACCGTATATTGGAGAACGTATCAGTTACACTTCCGCGAAACTGCATAATCATGGAGAAATTCTAATGAATTTGGCAAACCTTTCTCAATCTAAACTCCACATTTCATTTTTTTAAATTTCATTTTGAAACAATTTATTTAATAAATATTCAACTGAACCCACTTTTACAGGAAACAAGATAAAAAGAAGTCCAGAAGAGATACAAAAAACAATAGGACATTCGTTTCACAGCTAATTGTCATCTTCGTCGTTTTCTTCAAGAAGTAATGCTCCAGCCTCAGCGTCTTCCGAAGCCTGACGACTTTTGTATTYGATGAGACCTTTGGGAACCATGACAATTGCCAGCATTGCACAAAATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACAATTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGTTTCACTTTACTCATATTTTTCTACCATTAATATGTCGTTGCAAGCAAAACTATGTTGATATGCAGAAATAGCCGAGAGAGCAAATACGCTCCACCGAGTTGCTATGGTGACTACTCTTGTTGCTGTGGTTACTAACCTCGTGACTTTGATTTTGCTGTATCAATTTTTTTTTGTTGCTTTTTATTCTGTGAAACTTCTGTAACAATGAATCGTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>370 298 202 96 34</canonical_bands>
                <polymorphic_bands>572 298 96 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACTTTTACAGGAAACAAGATA</pcr_primer_p1>
		<pcr_primer_p2>TTTATGATGCCACTGGATTT</pcr_primer_p2>
		<pcr_amplicon_size>216</pcr_amplicon_size>
		<canonical_amplicon>CCACTTTTACAGGAAACAAGATAAAAAGAAGTCCAGAAGAGATACAAAAAACAATAGGACATTCGTTTCACAGCTAATTGTCATCTTCGTCGTTTTCTTCAAGAAGTAATGCTCCAGCCTCAGCGTCTTCCGAAGCCTGACGACTTTTGTATTCGATGAGACCTTTGGGAACCATGACAATTGCCAGCATTGCACAAAATCCAGTGGCATCATAAA</canonical_amplicon>
		<polymorphic_amplicon>CCACTTTTACAGGAAACAAGATAAAAAGAAGTCCAGAAGAGATACAAAAAACAATAGGACATTCGTTTCACAGCTAATTGTCATCTTCGTCGTTTTCTTCAAGAAGTAATGCTCCAGCCTCAGCGTCTTCCGAAGCCTGACGACTTTTGTATTYGATGAGACCTTTGGGAACCATGACAATTGCCAGCATTGCACAAAATCCAGTGGCATCATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15522</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>706662</contig_pos>
        <strand>+</strand>
        <context>TAAACTAGAT[C/T]AGRTTGTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATGACAATTGCCAGCATTGCACAAAATCCAGTGGCATCATAAACTAGAT</left_flank>
        <right_flank>AGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAACAGAATTATTCAAACCGCGACCAATTTTTTCAGGTTCTCAATCCATCCGAAAACTTCGAATTTGGACAAATAACTTCTAAGAACTTATACATTCCTTTTCCTATGCTCAACACTCACCGTATATTGGAGAACGTATCAGTTACACTTCCGCGAAACTGCATAATCATGGAGAAATTCTAATGAATTTGGCAAACCTTTCTCAATCTAAACTCCACATTTCATTTTTTTAAATTTCATTTTGAAACAATTTATTTAATAAATATTCAACTGAACCCACTTTTACAGGAAACAAGATAAAAAGAAGTCCAGAAGAGATACAAAAAACAATAGGACATTCGTTTCACAGCTAATTGTCATCTTCGTCGTTTTCTTCAAGAAGTAATGCTCCAGCCTCAGCGTCTTCCGAAGCCTGACGACTTTTGTATTCGATGAGACCTTTGGGAACCATGACAATTGCCAGCATTGCACAAAATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACAATTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGTTTCACTTTACTCATATTTTTCTACCATTAATATGTCGTTGCAAGCAAAACTATGTTGATATGCAGAAATAGCCGAGAGAGCAAATACGCTCCACCGAGTTGCTATGGTGACTACTCTTGTTGCTGTGGTTACTAACCTCGTGACTTTGATTTTGCTGTATCAATTTTTTTTTGTTGCTTTTTATTCTGTGAAACTTCTGTAACAATGAATCGTGATTTTTCTAAACCCAACTTGGATACGATGCCAAACAATGCGTTGAAGGAAATTCTGAACTATCTGAATATA</canonical>
            <polymorphic>ATAACAGAATTATTCAAACCGCGACCAATTTTTTCAGGTTCTCAATCCATCCGAAAACTTCGAATTTGGACAAATAACTTCTAAGAACTTATACATTCCTTTTCCTATGCTCAACACTCACCGTATATTGGAGAACGTATCAGTTACACTTCCGCGAAACTGCATAATCATGGAGAAATTCTAATGAATTTGGCAAACCTTTCTCAATCTAAACTCCACATTTCATTTTTTTAAATTTCATTTTGAAACAATTTATTTAATAAATATTCAACTGAACCCACTTTTACAGGAAACAAGATAAAAAGAAGTCCAGAAGAGATACAAAAAACAATAGGACATTCGTTTCACAGCTAATTGTCATCTTCGTCGTTTTCTTCAAGAAGTAATGCTCCAGCCTCAGCGTCTTCCGAAGCCTGACGACTTTTGTATTCGATGAGACCTTTGGGAACCATGACAATTGCCAGCATTGCACAAAATCCAGTGGCATCATAAACTAGATYAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACAATTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGTTTCACTTTACTCATATTTTTCTACCATTAATATGTCGTTGCAAGCAAAACTATGTTGATATGCAGAAATAGCCGAGAGAGCAAATACGCTCCACCGAGTTGCTATGGTGACTACTCTTGTTGCTGTGGTTACTAACCTCGTGACTTTGATTTTGCTGTATCAATTTTTTTTTGTTGCTTTTTATTCTGTGAAACTTCTGTAACAATGAATCGTGATTTTTCTAAACCCAACTTGGATACGATGCCAAACAATGCGTTGAAGGAAATTCTGAACTATCTGAATATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCCTGACGACTTTTGTATT</pcr_primer_p1>
		<pcr_primer_p2>GAAGGGAATTCTAGGAGTAGTATG</pcr_primer_p2>
		<pcr_amplicon_size>222</pcr_amplicon_size>
		<canonical_amplicon>AAGCCTGACGACTTTTGTATTCGATGAGACCTTTGGGAACCATGACAATTGCCAGCATTGCACAAAATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTC</canonical_amplicon>
		<polymorphic_amplicon>AAGCCTGACGACTTTTGTATTCGATGAGACCTTTGGGAACCATGACAATTGCCAGCATTGCACAAAATCCAGTGGCATCATAAACTAGATYAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15523</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>706665</contig_pos>
        <strand>+</strand>
        <context>ACTAGATYAG[A/G]TTGTTGAGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACAATTGCCAGCATTGCACAAAATCCAGTGGCATCATAAACTAGATTAG</left_flank>
        <right_flank>TTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGAATTATTCAAACCGCGACCAATTTTTTCAGGTTCTCAATCCATCCGAAAACTTCGAATTTGGACAAATAACTTCTAAGAACTTATACATTCCTTTTCCTATGCTCAACACTCACCGTATATTGGAGAACGTATCAGTTACACTTCCGCGAAACTGCATAATCATGGAGAAATTCTAATGAATTTGGCAAACCTTTCTCAATCTAAACTCCACATTTCATTTTTTTAAATTTCATTTTGAAACAATTTATTTAATAAATATTCAACTGAACCCACTTTTACAGGAAACAAGATAAAAAGAAGTCCAGAAGAGATACAAAAAACAATAGGACATTCGTTTCACAGCTAATTGTCATCTTCGTCGTTTTCTTCAAGAAGTAATGCTCCAGCCTCAGCGTCTTCCGAAGCCTGACGACTTTTGTATTCGATGAGACCTTTGGGAACCATGACAATTGCCAGCATTGCACAAAATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACAATTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGTTTCACTTTACTCATATTTTTCTACCATTAATATGTCGTTGCAAGCAAAACTATGTTGATATGCAGAAATAGCCGAGAGAGCAAATACGCTCCACCGAGTTGCTATGGTGACTACTCTTGTTGCTGTGGTTACTAACCTCGTGACTTTGATTTTGCTGTATCAATTTTTTTTTGTTGCTTTTTATTCTGTGAAACTTCTGTAACAATGAATCGTGATTTTTCTAAACCCAACTTGGATACGATGCCAAACAATGCGTTGAAGGAAATTCTGAACTATCTGAATATAAAA</canonical>
            <polymorphic>ACAGAATTATTCAAACCGCGACCAATTTTTTCAGGTTCTCAATCCATCCGAAAACTTCGAATTTGGACAAATAACTTCTAAGAACTTATACATTCCTTTTCCTATGCTCAACACTCACCGTATATTGGAGAACGTATCAGTTACACTTCCGCGAAACTGCATAATCATGGAGAAATTCTAATGAATTTGGCAAACCTTTCTCAATCTAAACTCCACATTTCATTTTTTTAAATTTCATTTTGAAACAATTTATTTAATAAATATTCAACTGAACCCACTTTTACAGGAAACAAGATAAAAAGAAGTCCAGAAGAGATACAAAAAACAATAGGACATTCGTTTCACAGCTAATTGTCATCTTCGTCGTTTTCTTCAAGAAGTAATGCTCCAGCCTCAGCGTCTTCCGAAGCCTGACGACTTTTGTATTCGATGAGACCTTTGGGAACCATGACAATTGCCAGCATTGCACAAAATCCAGTGGCATCATAAACTAGATTAGRTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACAATTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGTTTCACTTTACTCATATTTTTCTACCATTAATATGTCGTTGCAAGCAAAACTATGTTGATATGCAGAAATAGCCGAGAGAGCAAATACGCTCCACCGAGTTGCTATGGTGACTACTCTTGTTGCTGTGGTTACTAACCTCGTGACTTTGATTTTGCTGTATCAATTTTTTTTTGTTGCTTTTTATTCTGTGAAACTTCTGTAACAATGAATCGTGATTTTTCTAAACCCAACTTGGATACGATGCCAAACAATGCGTTGAAGGAAATTCTGAACTATCTGAATATAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCCTGACGACTTTTGTATT</pcr_primer_p1>
		<pcr_primer_p2>GAAGGGAATTCTAGGAGTAGTATG</pcr_primer_p2>
		<pcr_amplicon_size>222</pcr_amplicon_size>
		<canonical_amplicon>AAGCCTGACGACTTTTGTATTCGATGAGACCTTTGGGAACCATGACAATTGCCAGCATTGCACAAAATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTC</canonical_amplicon>
		<polymorphic_amplicon>AAGCCTGACGACTTTTGTATTCGATGAGACCTTTGGGAACCATGACAATTGCCAGCATTGCACAAAATCCAGTGGCATCATAAACTAGATTAGRTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15524</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>706715</contig_pos>
        <strand>+</strand>
        <context>GTCTTATAAA[A/G]TGTTTTTGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAA</left_flank>
        <right_flank>TGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACTTCGAATTTGGACAAATAACTTCTAAGAACTTATACATTCCTTTTCCTATGCTCAACACTCACCGTATATTGGAGAACGTATCAGTTACACTTCCGCGAAACTGCATAATCATGGAGAAATTCTAATGAATTTGGCAAACCTTTCTCAATCTAAACTCCACATTTCATTTTTTTAAATTTCATTTTGAAACAATTTATTTAATAAATATTCAACTGAACCCACTTTTACAGGAAACAAGATAAAAAGAAGTCCAGAAGAGATACAAAAAACAATAGGACATTCGTTTCACAGCTAATTGTCATCTTCGTCGTTTTCTTCAAGAAGTAATGCTCCAGCCTCAGCGTCTTCCGAAGCCTGACGACTTTTGTATTCGATGAGACCTTTGGGAACCATGACAATTGCCAGCATTGCACAAAATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACAATTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGTTTCACTTTACTCATATTTTTCTACCATTAATATGTCGTTGCAAGCAAAACTATGTTGATATGCAGAAATAGCCGAGAGAGCAAATACGCTCCACCGAGTTGCTATGGTGACTACTCTTGTTGCTGTGGTTACTAACCTCGTGACTTTGATTTTGCTGTATCAATTTTTTTTTGTTGCTTTTTATTCTGTGAAACTTCTGTAACAATGAATCGTGATTTTTCTAAACCCAACTTGGATACGATGCCAAACAATGCGTTGAAGGAAATTCTGAACTATCTGAATATAAAAGAAAGGTTTGTAAAACTGAAAAAATGGAAATCGCAACAAAACATTTCAGA</canonical>
            <polymorphic>AAAACTTCGAATTTGGACAAATAACTTCTAAGAACTTATACATTCCTTTTCCTATGCTCAACACTCACCGTATATTGGAGAACGTATCAGTTACACTTCCGCGAAACTGCATAATCATGGAGAAATTCTAATGAATTTGGCAAACCTTTCTCAATCTAAACTCCACATTTCATTTTTTTAAATTTCATTTTGAAACAATTTATTTAATAAATATTCAACTGAACCCACTTTTACAGGAAACAAGATAAAAAGAAGTCCAGAAGAGATACAAAAAACAATAGGACATTCGTTTCACAGCTAATTGTCATCTTCGTCGTTTTCTTCAAGAAGTAATGCTCCAGCCTCAGCGTCTTCCGAAGCCTGACGACTTTTGTATTCGATGAGACCTTTGGGAACCATGACAATTGCCAGCATTGCACAAAATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAARTGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACAATTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGTTTCACTTTACTCATATTTTTCTACCATTAATATGTCGTTGCAAGCAAAACTATGTTGATATGCAGAAATAGCCGAGAGAGCAAATACGCTCCACCGAGTTGCTATGGTGACTACTCTTGTTGCTGTGGTTACTAACCTCGTGACTTTGATTTTGCTGTATCAATTTTTTTTTGTTGCTTTTTATTCTGTGAAACTTCTGTAACAATGAATCGTGATTTTTCTAAACCCAACTTGGATACGATGCCAAACAATGCGTTGAAGGAAATTCTGAACTATCTGAATATAAAAGAAAGGTTTGTAAAACTGAAAAAATGGAAATCGCAACAAAACATTTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCCAGTGGCATCATAAACTA</pcr_primer_p1>
		<pcr_primer_p2>ACGTTTCAAGAATGACTAACTTG</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>AATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACAATTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGT</canonical_amplicon>
		<polymorphic_amplicon>AATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAARTGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACAATTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15525</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>706730</contig_pos>
        <strand>+</strand>
        <context>TTTGACCCTC[A/T]CTCCGCMGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTC</left_flank>
        <right_flank>CTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACAAATAACTTCTAAGAACTTATACATTCCTTTTCCTATGCTCAACACTCACCGTATATTGGAGAACGTATCAGTTACACTTCCGCGAAACTGCATAATCATGGAGAAATTCTAATGAATTTGGCAAACCTTTCTCAATCTAAACTCCACATTTCATTTTTTTAAATTTCATTTTGAAACAATTTATTTAATAAATATTCAACTGAACCCACTTTTACAGGAAACAAGATAAAAAGAAGTCCAGAAGAGATACAAAAAACAATAGGACATTCGTTTCACAGCTAATTGTCATCTTCGTCGTTTTCTTCAAGAAGTAATGCTCCAGCCTCAGCGTCTTCCGAAGCCTGACGACTTTTGTATTCGATGAGACCTTTGGGAACCATGACAATTGCCAGCATTGCACAAAATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACAATTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGTTTCACTTTACTCATATTTTTCTACCATTAATATGTCGTTGCAAGCAAAACTATGTTGATATGCAGAAATAGCCGAGAGAGCAAATACGCTCCACCGAGTTGCTATGGTGACTACTCTTGTTGCTGTGGTTACTAACCTCGTGACTTTGATTTTGCTGTATCAATTTTTTTTTGTTGCTTTTTATTCTGTGAAACTTCTGTAACAATGAATCGTGATTTTTCTAAACCCAACTTGGATACGATGCCAAACAATGCGTTGAAGGAAATTCTGAACTATCTGAATATAAAAGAAAGGTTTGTAAAACTGAAAAAATGGAAATCGCAACAAAACATTTCAGATCGGTTCTTCGAAAA</canonical>
            <polymorphic>GACAAATAACTTCTAAGAACTTATACATTCCTTTTCCTATGCTCAACACTCACCGTATATTGGAGAACGTATCAGTTACACTTCCGCGAAACTGCATAATCATGGAGAAATTCTAATGAATTTGGCAAACCTTTCTCAATCTAAACTCCACATTTCATTTTTTTAAATTTCATTTTGAAACAATTTATTTAATAAATATTCAACTGAACCCACTTTTACAGGAAACAAGATAAAAAGAAGTCCAGAAGAGATACAAAAAACAATAGGACATTCGTTTCACAGCTAATTGTCATCTTCGTCGTTTTCTTCAAGAAGTAATGCTCCAGCCTCAGCGTCTTCCGAAGCCTGACGACTTTTGTATTCGATGAGACCTTTGGGAACCATGACAATTGCCAGCATTGCACAAAATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCWCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACAATTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGTTTCACTTTACTCATATTTTTCTACCATTAATATGTCGTTGCAAGCAAAACTATGTTGATATGCAGAAATAGCCGAGAGAGCAAATACGCTCCACCGAGTTGCTATGGTGACTACTCTTGTTGCTGTGGTTACTAACCTCGTGACTTTGATTTTGCTGTATCAATTTTTTTTTGTTGCTTTTTATTCTGTGAAACTTCTGTAACAATGAATCGTGATTTTTCTAAACCCAACTTGGATACGATGCCAAACAATGCGTTGAAGGAAATTCTGAACTATCTGAATATAAAAGAAAGGTTTGTAAAACTGAAAAAATGGAAATCGCAACAAAACATTTCAGATCGGTTCTTCGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCCAGTGGCATCATAAACTA</pcr_primer_p1>
		<pcr_primer_p2>ACGTTTCAAGAATGACTAACTTG</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>AATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACAATTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGT</canonical_amplicon>
		<polymorphic_amplicon>AATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCWCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACAATTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15526</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>706737</contig_pos>
        <strand>+</strand>
        <context>CTCWCTCCGC[A/C]GGTACCTGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGC</left_flank>
        <right_flank>GGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTTCTAAGAACTTATACATTCCTTTTCCTATGCTCAACACTCACCGTATATTGGAGAACGTATCAGTTACACTTCCGCGAAACTGCATAATCATGGAGAAATTCTAATGAATTTGGCAAACCTTTCTCAATCTAAACTCCACATTTCATTTTTTTAAATTTCATTTTGAAACAATTTATTTAATAAATATTCAACTGAACCCACTTTTACAGGAAACAAGATAAAAAGAAGTCCAGAAGAGATACAAAAAACAATAGGACATTCGTTTCACAGCTAATTGTCATCTTCGTCGTTTTCTTCAAGAAGTAATGCTCCAGCCTCAGCGTCTTCCGAAGCCTGACGACTTTTGTATTCGATGAGACCTTTGGGAACCATGACAATTGCCAGCATTGCACAAAATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACAATTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGTTTCACTTTACTCATATTTTTCTACCATTAATATGTCGTTGCAAGCAAAACTATGTTGATATGCAGAAATAGCCGAGAGAGCAAATACGCTCCACCGAGTTGCTATGGTGACTACTCTTGTTGCTGTGGTTACTAACCTCGTGACTTTGATTTTGCTGTATCAATTTTTTTTTGTTGCTTTTTATTCTGTGAAACTTCTGTAACAATGAATCGTGATTTTTCTAAACCCAACTTGGATACGATGCCAAACAATGCGTTGAAGGAAATTCTGAACTATCTGAATATAAAAGAAAGGTTTGTAAAACTGAAAAAATGGAAATCGCAACAAAACATTTCAGATCGGTTCTTCGAAAAGTGAACC</canonical>
            <polymorphic>AACTTCTAAGAACTTATACATTCCTTTTCCTATGCTCAACACTCACCGTATATTGGAGAACGTATCAGTTACACTTCCGCGAAACTGCATAATCATGGAGAAATTCTAATGAATTTGGCAAACCTTTCTCAATCTAAACTCCACATTTCATTTTTTTAAATTTCATTTTGAAACAATTTATTTAATAAATATTCAACTGAACCCACTTTTACAGGAAACAAGATAAAAAGAAGTCCAGAAGAGATACAAAAAACAATAGGACATTCGTTTCACAGCTAATTGTCATCTTCGTCGTTTTCTTCAAGAAGTAATGCTCCAGCCTCAGCGTCTTCCGAAGCCTGACGACTTTTGTATTCGATGAGACCTTTGGGAACCATGACAATTGCCAGCATTGCACAAAATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCMGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACAATTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGTTTCACTTTACTCATATTTTTCTACCATTAATATGTCGTTGCAAGCAAAACTATGTTGATATGCAGAAATAGCCGAGAGAGCAAATACGCTCCACCGAGTTGCTATGGTGACTACTCTTGTTGCTGTGGTTACTAACCTCGTGACTTTGATTTTGCTGTATCAATTTTTTTTTGTTGCTTTTTATTCTGTGAAACTTCTGTAACAATGAATCGTGATTTTTCTAAACCCAACTTGGATACGATGCCAAACAATGCGTTGAAGGAAATTCTGAACTATCTGAATATAAAAGAAAGGTTTGTAAAACTGAAAAAATGGAAATCGCAACAAAACATTTCAGATCGGTTCTTCGAAAAGTGAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCCAGTGGCATCATAAACTA</pcr_primer_p1>
		<pcr_primer_p2>ACGTTTCAAGAATGACTAACTTG</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>AATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACAATTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGT</canonical_amplicon>
		<polymorphic_amplicon>AATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCMGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACAATTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15527</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>706794</contig_pos>
        <strand>+</strand>
        <context>AATTCCCTTC[A/T]CGACARTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTC</left_flank>
        <right_flank>CGACAATTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACGTATCAGTTACACTTCCGCGAAACTGCATAATCATGGAGAAATTCTAATGAATTTGGCAAACCTTTCTCAATCTAAACTCCACATTTCATTTTTTTAAATTTCATTTTGAAACAATTTATTTAATAAATATTCAACTGAACCCACTTTTACAGGAAACAAGATAAAAAGAAGTCCAGAAGAGATACAAAAAACAATAGGACATTCGTTTCACAGCTAATTGTCATCTTCGTCGTTTTCTTCAAGAAGTAATGCTCCAGCCTCAGCGTCTTCCGAAGCCTGACGACTTTTGTATTCGATGAGACCTTTGGGAACCATGACAATTGCCAGCATTGCACAAAATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACAATTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGTTTCACTTTACTCATATTTTTCTACCATTAATATGTCGTTGCAAGCAAAACTATGTTGATATGCAGAAATAGCCGAGAGAGCAAATACGCTCCACCGAGTTGCTATGGTGACTACTCTTGTTGCTGTGGTTACTAACCTCGTGACTTTGATTTTGCTGTATCAATTTTTTTTTGTTGCTTTTTATTCTGTGAAACTTCTGTAACAATGAATCGTGATTTTTCTAAACCCAACTTGGATACGATGCCAAACAATGCGTTGAAGGAAATTCTGAACTATCTGAATATAAAAGAAAGGTTTGTAAAACTGAAAAAATGGAAATCGCAACAAAACATTTCAGATCGGTTCTTCGAAAAGTGAACCGCACGCTCCGAGAAGCGGTGGATAATAACCATACTATTGTCGATGTGGTACTTGATT</canonical>
            <polymorphic>GAACGTATCAGTTACACTTCCGCGAAACTGCATAATCATGGAGAAATTCTAATGAATTTGGCAAACCTTTCTCAATCTAAACTCCACATTTCATTTTTTTAAATTTCATTTTGAAACAATTTATTTAATAAATATTCAACTGAACCCACTTTTACAGGAAACAAGATAAAAAGAAGTCCAGAAGAGATACAAAAAACAATAGGACATTCGTTTCACAGCTAATTGTCATCTTCGTCGTTTTCTTCAAGAAGTAATGCTCCAGCCTCAGCGTCTTCCGAAGCCTGACGACTTTTGTATTCGATGAGACCTTTGGGAACCATGACAATTGCCAGCATTGCACAAAATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCWCGACAATTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGTTTCACTTTACTCATATTTTTCTACCATTAATATGTCGTTGCAAGCAAAACTATGTTGATATGCAGAAATAGCCGAGAGAGCAAATACGCTCCACCGAGTTGCTATGGTGACTACTCTTGTTGCTGTGGTTACTAACCTCGTGACTTTGATTTTGCTGTATCAATTTTTTTTTGTTGCTTTTTATTCTGTGAAACTTCTGTAACAATGAATCGTGATTTTTCTAAACCCAACTTGGATACGATGCCAAACAATGCGTTGAAGGAAATTCTGAACTATCTGAATATAAAAGAAAGGTTTGTAAAACTGAAAAAATGGAAATCGCAACAAAACATTTCAGATCGGTTCTTCGAAAAGTGAACCGCACGCTCCGAGAAGCGGTGGATAATAACCATACTATTGTCGATGTGGTACTTGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>430 299 202 53 16</canonical_bands>
                <polymorphic_bands>632 299 53 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCCAGTGGCATCATAAACTA</pcr_primer_p1>
		<pcr_primer_p2>ACGTTTCAAGAATGACTAACTTG</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>AATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACAATTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGT</canonical_amplicon>
		<polymorphic_amplicon>AATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCWCGACAATTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15528</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>706800</contig_pos>
        <strand>+</strand>
        <context>CTTCWCGACA[A/G]TTTTAAAAAW</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACA</left_flank>
        <right_flank>TTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAGTTACACTTCCGCGAAACTGCATAATCATGGAGAAATTCTAATGAATTTGGCAAACCTTTCTCAATCTAAACTCCACATTTCATTTTTTTAAATTTCATTTTGAAACAATTTATTTAATAAATATTCAACTGAACCCACTTTTACAGGAAACAAGATAAAAAGAAGTCCAGAAGAGATACAAAAAACAATAGGACATTCGTTTCACAGCTAATTGTCATCTTCGTCGTTTTCTTCAAGAAGTAATGCTCCAGCCTCAGCGTCTTCCGAAGCCTGACGACTTTTGTATTCGATGAGACCTTTGGGAACCATGACAATTGCCAGCATTGCACAAAATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACAATTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGTTTCACTTTACTCATATTTTTCTACCATTAATATGTCGTTGCAAGCAAAACTATGTTGATATGCAGAAATAGCCGAGAGAGCAAATACGCTCCACCGAGTTGCTATGGTGACTACTCTTGTTGCTGTGGTTACTAACCTCGTGACTTTGATTTTGCTGTATCAATTTTTTTTTGTTGCTTTTTATTCTGTGAAACTTCTGTAACAATGAATCGTGATTTTTCTAAACCCAACTTGGATACGATGCCAAACAATGCGTTGAAGGAAATTCTGAACTATCTGAATATAAAAGAAAGGTTTGTAAAACTGAAAAAATGGAAATCGCAACAAAACATTTCAGATCGGTTCTTCGAAAAGTGAACCGCACGCTCCGAGAAGCGGTGGATAATAACCATACTATTGTCGATGTGGTACTTGATTTCTGGA</canonical>
            <polymorphic>ATCAGTTACACTTCCGCGAAACTGCATAATCATGGAGAAATTCTAATGAATTTGGCAAACCTTTCTCAATCTAAACTCCACATTTCATTTTTTTAAATTTCATTTTGAAACAATTTATTTAATAAATATTCAACTGAACCCACTTTTACAGGAAACAAGATAAAAAGAAGTCCAGAAGAGATACAAAAAACAATAGGACATTCGTTTCACAGCTAATTGTCATCTTCGTCGTTTTCTTCAAGAAGTAATGCTCCAGCCTCAGCGTCTTCCGAAGCCTGACGACTTTTGTATTCGATGAGACCTTTGGGAACCATGACAATTGCCAGCATTGCACAAAATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACARTTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGTTTCACTTTACTCATATTTTTCTACCATTAATATGTCGTTGCAAGCAAAACTATGTTGATATGCAGAAATAGCCGAGAGAGCAAATACGCTCCACCGAGTTGCTATGGTGACTACTCTTGTTGCTGTGGTTACTAACCTCGTGACTTTGATTTTGCTGTATCAATTTTTTTTTGTTGCTTTTTATTCTGTGAAACTTCTGTAACAATGAATCGTGATTTTTCTAAACCCAACTTGGATACGATGCCAAACAATGCGTTGAAGGAAATTCTGAACTATCTGAATATAAAAGAAAGGTTTGTAAAACTGAAAAAATGGAAATCGCAACAAAACATTTCAGATCGGTTCTTCGAAAAGTGAACCGCACGCTCCGAGAAGCGGTGGATAATAACCATACTATTGTCGATGTGGTACTTGATTTCTGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>231 166 160 103 103 102 47 38 16 15 10 9</canonical_bands>
                <polymorphic_bands>231 166 160 103 103 102 47 38 24 16 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCCAGTGGCATCATAAACTA</pcr_primer_p1>
		<pcr_primer_p2>ACGTTTCAAGAATGACTAACTTG</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>AATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACAATTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGT</canonical_amplicon>
		<polymorphic_amplicon>AATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACARTTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15529</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>706810</contig_pos>
        <strand>+</strand>
        <context>RTTTTAAAAA[A/T]TTTTCATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACAATTTTAAAAA</left_flank>
        <right_flank>TTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCCGCGAAACTGCATAATCATGGAGAAATTCTAATGAATTTGGCAAACCTTTCTCAATCTAAACTCCACATTTCATTTTTTTAAATTTCATTTTGAAACAATTTATTTAATAAATATTCAACTGAACCCACTTTTACAGGAAACAAGATAAAAAGAAGTCCAGAAGAGATACAAAAAACAATAGGACATTCGTTTCACAGCTAATTGTCATCTTCGTCGTTTTCTTCAAGAAGTAATGCTCCAGCCTCAGCGTCTTCCGAAGCCTGACGACTTTTGTATTCGATGAGACCTTTGGGAACCATGACAATTGCCAGCATTGCACAAAATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACAATTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGTTTCACTTTACTCATATTTTTCTACCATTAATATGTCGTTGCAAGCAAAACTATGTTGATATGCAGAAATAGCCGAGAGAGCAAATACGCTCCACCGAGTTGCTATGGTGACTACTCTTGTTGCTGTGGTTACTAACCTCGTGACTTTGATTTTGCTGTATCAATTTTTTTTTGTTGCTTTTTATTCTGTGAAACTTCTGTAACAATGAATCGTGATTTTTCTAAACCCAACTTGGATACGATGCCAAACAATGCGTTGAAGGAAATTCTGAACTATCTGAATATAAAAGAAAGGTTTGTAAAACTGAAAAAATGGAAATCGCAACAAAACATTTCAGATCGGTTCTTCGAAAAGTGAACCGCACGCTCCGAGAAGCGGTGGATAATAACCATACTATTGTCGATGTGGTACTTGATTTCTGGAATGACTCTAT</canonical>
            <polymorphic>CTTCCGCGAAACTGCATAATCATGGAGAAATTCTAATGAATTTGGCAAACCTTTCTCAATCTAAACTCCACATTTCATTTTTTTAAATTTCATTTTGAAACAATTTATTTAATAAATATTCAACTGAACCCACTTTTACAGGAAACAAGATAAAAAGAAGTCCAGAAGAGATACAAAAAACAATAGGACATTCGTTTCACAGCTAATTGTCATCTTCGTCGTTTTCTTCAAGAAGTAATGCTCCAGCCTCAGCGTCTTCCGAAGCCTGACGACTTTTGTATTCGATGAGACCTTTGGGAACCATGACAATTGCCAGCATTGCACAAAATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACAATTTTAAAAAWTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGTTTCACTTTACTCATATTTTTCTACCATTAATATGTCGTTGCAAGCAAAACTATGTTGATATGCAGAAATAGCCGAGAGAGCAAATACGCTCCACCGAGTTGCTATGGTGACTACTCTTGTTGCTGTGGTTACTAACCTCGTGACTTTGATTTTGCTGTATCAATTTTTTTTTGTTGCTTTTTATTCTGTGAAACTTCTGTAACAATGAATCGTGATTTTTCTAAACCCAACTTGGATACGATGCCAAACAATGCGTTGAAGGAAATTCTGAACTATCTGAATATAAAAGAAAGGTTTGTAAAACTGAAAAAATGGAAATCGCAACAAAACATTTCAGATCGGTTCTTCGAAAAGTGAACCGCACGCTCCGAGAAGCGGTGGATAATAACCATACTATTGTCGATGTGGTACTTGATTTCTGGAATGACTCTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>388 333 170 47 28 24 10</canonical_bands>
                <polymorphic_bands>388 357 170 47 28 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>231 170 166 103 103 102 47 28 16 15 10 9</canonical_bands>
                <polymorphic_bands>240 170 166 103 103 102 47 28 16 15 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCCAGTGGCATCATAAACTA</pcr_primer_p1>
		<pcr_primer_p2>ACGTTTCAAGAATGACTAACTTG</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>AATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACAATTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGT</canonical_amplicon>
		<polymorphic_amplicon>AATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACAATTTTAAAAAWTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15530</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>706899</contig_pos>
        <strand>+</strand>
        <context>CATATTTTTC[C/T]ACCATTAAYA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAAACAAGTTAGTCATTCTTGAAACGTTTCACTTTACTCATATTTTTC</left_flank>
        <right_flank>ACCATTAATATGTCGTTGCAAGCAAAACTATGTTGATATGCAGAAATAGC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATTTTGAAACAATTTATTTAATAAATATTCAACTGAACCCACTTTTACAGGAAACAAGATAAAAAGAAGTCCAGAAGAGATACAAAAAACAATAGGACATTCGTTTCACAGCTAATTGTCATCTTCGTCGTTTTCTTCAAGAAGTAATGCTCCAGCCTCAGCGTCTTCCGAAGCCTGACGACTTTTGTATTCGATGAGACCTTTGGGAACCATGACAATTGCCAGCATTGCACAAAATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACAATTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGTTTCACTTTACTCATATTTTTCTACCATTAATATGTCGTTGCAAGCAAAACTATGTTGATATGCAGAAATAGCCGAGAGAGCAAATACGCTCCACCGAGTTGCTATGGTGACTACTCTTGTTGCTGTGGTTACTAACCTCGTGACTTTGATTTTGCTGTATCAATTTTTTTTTGTTGCTTTTTATTCTGTGAAACTTCTGTAACAATGAATCGTGATTTTTCTAAACCCAACTTGGATACGATGCCAAACAATGCGTTGAAGGAAATTCTGAACTATCTGAATATAAAAGAAAGGTTTGTAAAACTGAAAAAATGGAAATCGCAACAAAACATTTCAGATCGGTTCTTCGAAAAGTGAACCGCACGCTCCGAGAAGCGGTGGATAATAACCATACTATTGTCGATGTGGTACTTGATTTCTGGAATGACTCTATCACTCTCAAATTGGATGAGATCGAAATAGAGTACAGCATTGAAGATGAGGATAAATGTGAGGTACAAGTTGGCCAGACATCAAAAATAT</canonical>
            <polymorphic>TCATTTTGAAACAATTTATTTAATAAATATTCAACTGAACCCACTTTTACAGGAAACAAGATAAAAAGAAGTCCAGAAGAGATACAAAAAACAATAGGACATTCGTTTCACAGCTAATTGTCATCTTCGTCGTTTTCTTCAAGAAGTAATGCTCCAGCCTCAGCGTCTTCCGAAGCCTGACGACTTTTGTATTCGATGAGACCTTTGGGAACCATGACAATTGCCAGCATTGCACAAAATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACAATTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGTTTCACTTTACTCATATTTTTCYACCATTAATATGTCGTTGCAAGCAAAACTATGTTGATATGCAGAAATAGCCGAGAGAGCAAATACGCTCCACCGAGTTGCTATGGTGACTACTCTTGTTGCTGTGGTTACTAACCTCGTGACTTTGATTTTGCTGTATCAATTTTTTTTTGTTGCTTTTTATTCTGTGAAACTTCTGTAACAATGAATCGTGATTTTTCTAAACCCAACTTGGATACGATGCCAAACAATGCGTTGAAGGAAATTCTGAACTATCTGAATATAAAAGAAAGGTTTGTAAAACTGAAAAAATGGAAATCGCAACAAAACATTTCAGATCGGTTCTTCGAAAAGTGAACCGCACGCTCCGAGAAGCGGTGGATAATAACCATACTATTGTCGATGTGGTACTTGATTTCTGGAATGACTCTATCACTCTCAAATTGGATGAGATCGAAATAGAGTACAGCATTGAAGATGAGGATAAATGTGAGGTACAAGTTGGCCAGACATCAAAAATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTCTGCCTGATAAATATGGTA</pcr_primer_p1>
		<pcr_primer_p2>GTTTCACAGAATAAAAAGCAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGTTTCACTTTACTCATATTTTTCTACCATTAATATGTCGTTGCAAGCAAAACTATGTTGATATGCAGAAATAGCCGAGAGAGCAAATACGCTCCACCGAGTTGCTATGGTGACTACTCTTGTTGCTGTGGTTACTAACCTCGTGACTTTGATTTTGCTGTATCAATTTTTTTTTGTTGCTTTTTATTCTGTGAAAC</canonical_amplicon>
		<polymorphic_amplicon>GTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGTTTCACTTTACTCATATTTTTCYACCATTAATATGTCGTTGCAAGCAAAACTATGTTGATATGCAGAAATAGCCGAGAGAGCAAATACGCTCCACCGAGTTGCTATGGTGACTACTCTTGTTGCTGTGGTTACTAACCTCGTGACTTTGATTTTGCTGTATCAATTTTTTTTTGTTGCTTTTTATTCTGTGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15531</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>706908</contig_pos>
        <strand>+</strand>
        <context>CYACCATTAA[C/T]ATGTCGTTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTAGTCATTCTTGAAACGTTTCACTTTACTCATATTTTTCTACCATTAA</left_flank>
        <right_flank>ATGTCGTTGCAAGCAAAACTATGTTGATATGCAGAAATAGCCGAGAGAGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAATTTATTTAATAAATATTCAACTGAACCCACTTTTACAGGAAACAAGATAAAAAGAAGTCCAGAAGAGATACAAAAAACAATAGGACATTCGTTTCACAGCTAATTGTCATCTTCGTCGTTTTCTTCAAGAAGTAATGCTCCAGCCTCAGCGTCTTCCGAAGCCTGACGACTTTTGTATTCGATGAGACCTTTGGGAACCATGACAATTGCCAGCATTGCACAAAATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACAATTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGTTTCACTTTACTCATATTTTTCTACCATTAATATGTCGTTGCAAGCAAAACTATGTTGATATGCAGAAATAGCCGAGAGAGCAAATACGCTCCACCGAGTTGCTATGGTGACTACTCTTGTTGCTGTGGTTACTAACCTCGTGACTTTGATTTTGCTGTATCAATTTTTTTTTGTTGCTTTTTATTCTGTGAAACTTCTGTAACAATGAATCGTGATTTTTCTAAACCCAACTTGGATACGATGCCAAACAATGCGTTGAAGGAAATTCTGAACTATCTGAATATAAAAGAAAGGTTTGTAAAACTGAAAAAATGGAAATCGCAACAAAACATTTCAGATCGGTTCTTCGAAAAGTGAACCGCACGCTCCGAGAAGCGGTGGATAATAACCATACTATTGTCGATGTGGTACTTGATTTCTGGAATGACTCTATCACTCTCAAATTGGATGAGATCGAAATAGAGTACAGCATTGAAGATGAGGATAAATGTGAGGTACAAGTTGGCCAGACATCAAAAATATTAGACAGTA</canonical>
            <polymorphic>AACAATTTATTTAATAAATATTCAACTGAACCCACTTTTACAGGAAACAAGATAAAAAGAAGTCCAGAAGAGATACAAAAAACAATAGGACATTCGTTTCACAGCTAATTGTCATCTTCGTCGTTTTCTTCAAGAAGTAATGCTCCAGCCTCAGCGTCTTCCGAAGCCTGACGACTTTTGTATTCGATGAGACCTTTGGGAACCATGACAATTGCCAGCATTGCACAAAATCCAGTGGCATCATAAACTAGATTAGGTTGTTGAGATGCTTCCAGCTCTAGATCACTTGAAGGGATGTCTTATAAAATGTTTTTGACCCTCTCTCCGCAGGTACCTGGAACTCCATATGTGCTTCGGGCATCATACTACTCCTAGAATTCCCTTCTCGACAATTTTAAAAATTTTTCATTTTTGTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGTTTCACTTTACTCATATTTTTCTACCATTAAYATGTCGTTGCAAGCAAAACTATGTTGATATGCAGAAATAGCCGAGAGAGCAAATACGCTCCACCGAGTTGCTATGGTGACTACTCTTGTTGCTGTGGTTACTAACCTCGTGACTTTGATTTTGCTGTATCAATTTTTTTTTGTTGCTTTTTATTCTGTGAAACTTCTGTAACAATGAATCGTGATTTTTCTAAACCCAACTTGGATACGATGCCAAACAATGCGTTGAAGGAAATTCTGAACTATCTGAATATAAAAGAAAGGTTTGTAAAACTGAAAAAATGGAAATCGCAACAAAACATTTCAGATCGGTTCTTCGAAAAGTGAACCGCACGCTCCGAGAAGCGGTGGATAATAACCATACTATTGTCGATGTGGTACTTGATTTCTGGAATGACTCTATCACTCTCAAATTGGATGAGATCGAAATAGAGTACAGCATTGAAGATGAGGATAAATGTGAGGTACAAGTTGGCCAGACATCAAAAATATTAGACAGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTCTGCCTGATAAATATGGTA</pcr_primer_p1>
		<pcr_primer_p2>GTTTCACAGAATAAAAAGCAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGTTTCACTTTACTCATATTTTTCTACCATTAATATGTCGTTGCAAGCAAAACTATGTTGATATGCAGAAATAGCCGAGAGAGCAAATACGCTCCACCGAGTTGCTATGGTGACTACTCTTGTTGCTGTGGTTACTAACCTCGTGACTTTGATTTTGCTGTATCAATTTTTTTTTGTTGCTTTTTATTCTGTGAAAC</canonical_amplicon>
		<polymorphic_amplicon>GTCTCTGCCTGATAAATATGGTATCATTTAAAACAAGTTAGTCATTCTTGAAACGTTTCACTTTACTCATATTTTTCTACCATTAAYATGTCGTTGCAAGCAAAACTATGTTGATATGCAGAAATAGCCGAGAGAGCAAATACGCTCCACCGAGTTGCTATGGTGACTACTCTTGTTGCTGTGGTTACTAACCTCGTGACTTTGATTTTGCTGTATCAATTTTTTTTTGTTGCTTTTTATTCTGTGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15532</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>708549</contig_pos>
        <strand>+</strand>
        <context>CCAAAACGGA[A/G]GGAGTGGCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACTCTTGCAAATCTTGACAACTTTTTTCGACGAGCTCACCCAAAACGGA</left_flank>
        <right_flank>GGAGTGGCTTTTGCGTCGAAACTCTAGAACTCGTAGAAAACGCTGGAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGCATAACTATGGAGAAATGCGAGTGAATTTGGCTTGCCTTTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAAGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAAACAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGTCGTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATTGCGACCATTGCACAAATTCCAGTTGGCCAGAAATCAAAAATAGTGAACAGTGATTACATGGAAATTGAGAATAAAGGCCTTGGTACTTATCTAAAAAACCCCAATACAAAGATAAAAAATCTGAAGCTACAATGGAAATTTTCTGGGTATCTTTTTGATATACTCTTGCAAATCTTGACAACTTTTTTCGACGAGCTCACCCAAAACGGAAGGAGTGGCTTTTGCGTCGAAACTCTAGAACTCGTAGAAAACGCTGGAAATAACATTGCTCAAGTGTTGAGGTTGATTGATGTGAACACTATCAAATCGATTGTGATCAATTCCCTGTGCACGATAAAGAAGGATTTCTCAATTTACCACAATGGGAAGAATACGTGATTTTCGACTTTTCGGTGATGCAGAACGTCCATATAATACCATTAACGCCCTTGGAAACGTAGCATCCTTCAGCATTTATCAGCTTAACAACAACGTGGAATTTACTTCCCTAACCATTATTTTTATTCTCATAGTGAGTTGATCCCAGAATTATTGGCAATCCTCAACCAATTTTTTTCAGGTTTTCAATCTTTCTGAGAACTTTCAACGTGGACATAACTTCTCATGACTTAAATCTTCCTCTTCCTTTTAACAACGTTCGACTCATTTTGGGAAATGTGGCAGTTAGATTTCAGCAAAACAGAATAAATATAGAGAAATTCGAGTGAATAT</canonical>
            <polymorphic>ATCGCATAACTATGGAGAAATGCGAGTGAATTTGGCTTGCCTTTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAAGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAAACAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGTCGTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATTGCGACCATTGCACAAATTCCAGTTGGCCAGAAATCAAAAATAGTGAACAGTGATTACATGGAAATTGAGAATAAAGGCCTTGGTACTTATCTAAAAAACCCCAATACAAAGATAAAAAATCTGAAGCTACAATGGAAATTTTCTGGGTATCTTTTTGATATACTCTTGCAAATCTTGACAACTTTTTTCGACGAGCTCACCCAAAACGGARGGAGTGGCTTTTGCGTCGAAACTCTAGAACTCGTAGAAAACGCTGGAAATAACATTGCTCAAGTGTTGAGGTTGATTGATGTGAACACTATCAAATCGATTGTGATCAATTCCCTGTGCACGATAAAGAAGGATTTCTCAATTTACCACAATGGGAAGAATACGTGATTTTCGACTTTTCGGTGATGCAGAACGTCCATATAATACCATTAACGCCCTTGGAAACGTAGCATCCTTCAGCATTTATCAGCTTAACAACAACGTGGAATTTACTTCCCTAACCATTATTTTTATTCTCATAGTGAGTTGATCCCAGAATTATTGGCAATCCTCAACCAATTTTTTTCAGGTTTTCAATCTTTCTGAGAACTTTCAACGTGGACATAACTTCTCATGACTTAAATCTTCCTCTTCCTTTTAACAACGTTCGACTCATTTTGGGAAATGTGGCAGTTAGATTTCAGCAAAACAGAATAAATATAGAGAAATTCGAGTGAATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACAGTGATTACATGGAAATTG</pcr_primer_p1>
		<pcr_primer_p2>ACATCAATCAACCTCAACACTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAACAGTGATTACATGGAAATTGAGAATAAAGGCCTTGGTACTTATCTAAAAAACCCCAATACAAAGATAAAAAATCTGAAGCTACAATGGAAATTTTCTGGGTATCTTTTTGATATACTCTTGCAAATCTTGACAACTTTTTTCGACGAGCTCACCCAAAACGGAAGGAGTGGCTTTTGCGTCGAAACTCTAGAACTCGTAGAAAACGCTGGAAATAACATTGCTCAAGTGTTGAGGTTGATTGATGT</canonical_amplicon>
		<polymorphic_amplicon>GAACAGTGATTACATGGAAATTGAGAATAAAGGCCTTGGTACTTATCTAAAAAACCCCAATACAAAGATAAAAAATCTGAAGCTACAATGGAAATTTTCTGGGTATCTTTTTGATATACTCTTGCAAATCTTGACAACTTTTTTCGACGAGCTCACCCAAAACGGARGGAGTGGCTTTTGCGTCGAAACTCTAGAACTCGTAGAAAACGCTGGAAATAACATTGCTCAAGTGTTGAGGTTGATTGATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15533</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>708474</contig_pos>
        <strand>+</strand>
        <context>GCTACAATGG[A/G]AATTTTCTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTATCTAAAAAACCCCAATACAAAGATAAAAAATCTGAAGCTACAATGG</left_flank>
        <right_flank>AATTTTCTGGGTATCTTTTTGATATACTCTTGCAAATCTTGACAACTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAACTTATATATTCCTGCTCCTTTCATCAATGCTCACCTAATATTGGGAAATGTATCTGTTACACTTGAGCAAAATCGCATAACTATGGAGAAATGCGAGTGAATTTGGCTTGCCTTTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAAGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAAACAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGTCGTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATTGCGACCATTGCACAAATTCCAGTTGGCCAGAAATCAAAAATAGTGAACAGTGATTACATGGAAATTGAGAATAAAGGCCTTGGTACTTATCTAAAAAACCCCAATACAAAGATAAAAAATCTGAAGCTACAATGGAAATTTTCTGGGTATCTTTTTGATATACTCTTGCAAATCTTGACAACTTTTTTCGACGAGCTCACCCAAAACGGAAGGAGTGGCTTTTGCGTCGAAACTCTAGAACTCGTAGAAAACGCTGGAAATAACATTGCTCAAGTGTTGAGGTTGATTGATGTGAACACTATCAAATCGATTGTGATCAATTCCCTGTGCACGATAAAGAAGGATTTCTCAATTTACCACAATGGGAAGAATACGTGATTTTCGACTTTTCGGTGATGCAGAACGTCCATATAATACCATTAACGCCCTTGGAAACGTAGCATCCTTCAGCATTTATCAGCTTAACAACAACGTGGAATTTACTTCCCTAACCATTATTTTTATTCTCATAGTGAGTTGATCCCAGAATTATTGGCAATCCTCAACCAATTTTTTTCAGGTTTTCAATCTTTCTGAGAACTTTCAACGTGGACATAACTTCTCATGACTTAAATCTTCCTCTTCCTTTTAACAACG</canonical>
            <polymorphic>GAAACTTATATATTCCTGCTCCTTTCATCAATGCTCACCTAATATTGGGAAATGTATCTGTTACACTTGAGCAAAATCGCATAACTATGGAGAAATGCGAGTGAATTTGGCTTGCCTTTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAAGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAAACAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGTCGTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATTGCGACCATTGCACAAATTCCAGTTGGCCAGAAATCAAAAATAGTGAACAGTGATTACATGGAAATTGAGAATAAAGGCCTTGGTACTTATCTAAAAAACCCCAATACAAAGATAAAAAATCTGAAGCTACAATGGRAATTTTCTGGGTATCTTTTTGATATACTCTTGCAAATCTTGACAACTTTTTTCGACGAGCTCACCCAAAACGGAAGGAGTGGCTTTTGCGTCGAAACTCTAGAACTCGTAGAAAACGCTGGAAATAACATTGCTCAAGTGTTGAGGTTGATTGATGTGAACACTATCAAATCGATTGTGATCAATTCCCTGTGCACGATAAAGAAGGATTTCTCAATTTACCACAATGGGAAGAATACGTGATTTTCGACTTTTCGGTGATGCAGAACGTCCATATAATACCATTAACGCCCTTGGAAACGTAGCATCCTTCAGCATTTATCAGCTTAACAACAACGTGGAATTTACTTCCCTAACCATTATTTTTATTCTCATAGTGAGTTGATCCCAGAATTATTGGCAATCCTCAACCAATTTTTTTCAGGTTTTCAATCTTTCTGAGAACTTTCAACGTGGACATAACTTCTCATGACTTAAATCTTCCTCTTCCTTTTAACAACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>340 275 160 122 103</canonical_bands>
                <polymorphic_bands>462 275 160 103</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACAGTGATTACATGGAAATTG</pcr_primer_p1>
		<pcr_primer_p2>ACATCAATCAACCTCAACACTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAACAGTGATTACATGGAAATTGAGAATAAAGGCCTTGGTACTTATCTAAAAAACCCCAATACAAAGATAAAAAATCTGAAGCTACAATGGAAATTTTCTGGGTATCTTTTTGATATACTCTTGCAAATCTTGACAACTTTTTTCGACGAGCTCACCCAAAACGGAAGGAGTGGCTTTTGCGTCGAAACTCTAGAACTCGTAGAAAACGCTGGAAATAACATTGCTCAAGTGTTGAGGTTGATTGATGT</canonical_amplicon>
		<polymorphic_amplicon>GAACAGTGATTACATGGAAATTGAGAATAAAGGCCTTGGTACTTATCTAAAAAACCCCAATACAAAGATAAAAAATCTGAAGCTACAATGGRAATTTTCTGGGTATCTTTTTGATATACTCTTGCAAATCTTGACAACTTTTTTCGACGAGCTCACCCAAAACGGAAGGAGTGGCTTTTGCGTCGAAACTCTAGAACTCGTAGAAAACGCTGGAAATAACATTGCTCAAGTGTTGAGGTTGATTGATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15534</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>708410</contig_pos>
        <strand>+</strand>
        <context>AAATTGMGAA[G/T]AAAGGCCTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTGGCCAGAAATCAAAAATAGTGAACAGTGATTACATGGAAATTGAGAA</left_flank>
        <right_flank>AAAGGCCTTGGTACTTATCTAAAAAACCCCAATACAAAGATAAAAAATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATCAAATTTTTTTCAGGTTCTCAATCGATCTGATAACTTCGAAAAAGGACAAATAACTTCTAGAAACTTATATATTCCTGCTCCTTTCATCAATGCTCACCTAATATTGGGAAATGTATCTGTTACACTTGAGCAAAATCGCATAACTATGGAGAAATGCGAGTGAATTTGGCTTGCCTTTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAAGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAAACAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGTCGTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATTGCGACCATTGCACAAATTCCAGTTGGCCAGAAATCAAAAATAGTGAACAGTGATTACATGGAAATTGAGAATAAAGGCCTTGGTACTTATCTAAAAAACCCCAATACAAAGATAAAAAATCTGAAGCTACAATGGAAATTTTCTGGGTATCTTTTTGATATACTCTTGCAAATCTTGACAACTTTTTTCGACGAGCTCACCCAAAACGGAAGGAGTGGCTTTTGCGTCGAAACTCTAGAACTCGTAGAAAACGCTGGAAATAACATTGCTCAAGTGTTGAGGTTGATTGATGTGAACACTATCAAATCGATTGTGATCAATTCCCTGTGCACGATAAAGAAGGATTTCTCAATTTACCACAATGGGAAGAATACGTGATTTTCGACTTTTCGGTGATGCAGAACGTCCATATAATACCATTAACGCCCTTGGAAACGTAGCATCCTTCAGCATTTATCAGCTTAACAACAACGTGGAATTTACTTCCCTAACCATTATTTTTATTCTCATAGTGAGTTGATCCCAGAATTATTGGCAATCCTCAACCAATTTTTTTCAGGTTTTCAATCTTT</canonical>
            <polymorphic>TAATCAAATTTTTTTCAGGTTCTCAATCGATCTGATAACTTCGAAAAAGGACAAATAACTTCTAGAAACTTATATATTCCTGCTCCTTTCATCAATGCTCACCTAATATTGGGAAATGTATCTGTTACACTTGAGCAAAATCGCATAACTATGGAGAAATGCGAGTGAATTTGGCTTGCCTTTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAAGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAAACAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGTCGTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATTGCGACCATTGCACAAATTCCAGTTGGCCAGAAATCAAAAATAGTGAACAGTGATTACATGGAAATTGAGAAKAAAGGCCTTGGTACTTATCTAAAAAACCCCAATACAAAGATAAAAAATCTGAAGCTACAATGGAAATTTTCTGGGTATCTTTTTGATATACTCTTGCAAATCTTGACAACTTTTTTCGACGAGCTCACCCAAAACGGAAGGAGTGGCTTTTGCGTCGAAACTCTAGAACTCGTAGAAAACGCTGGAAATAACATTGCTCAAGTGTTGAGGTTGATTGATGTGAACACTATCAAATCGATTGTGATCAATTCCCTGTGCACGATAAAGAAGGATTTCTCAATTTACCACAATGGGAAGAATACGTGATTTTCGACTTTTCGGTGATGCAGAACGTCCATATAATACCATTAACGCCCTTGGAAACGTAGCATCCTTCAGCATTTATCAGCTTAACAACAACGTGGAATTTACTTCCCTAACCATTATTTTTATTCTCATAGTGAGTTGATCCCAGAATTATTGGCAATCCTCAACCAATTTTTTTCAGGTTTTCAATCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCTCTCCAAAAAGTAAGGTTC</pcr_primer_p1>
		<pcr_primer_p2>ATATCAAAAAGATACCCAGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATTGCGACCATTGCACAAATTCCAGTTGGCCAGAAATCAAAAATAGTGAACAGTGATTACATGGAAATTGAGAATAAAGGCCTTGGTACTTATCTAAAAAACCCCAATACAAAGATAAAAAATCTGAAGCTACAATGGAAATTTTCTGGGTATCTTTTTGATAT</canonical_amplicon>
		<polymorphic_amplicon>GTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATTGCGACCATTGCACAAATTCCAGTTGGCCAGAAATCAAAAATAGTGAACAGTGATTACATGGAAATTGAGAAKAAAGGCCTTGGTACTTATCTAAAAAACCCCAATACAAAGATAAAAAATCTGAAGCTACAATGGAAATTTTCTGGGTATCTTTTTGATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15535</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>708406</contig_pos>
        <strand>+</strand>
        <context>ATGGAAATTG[A/C]GAAKAAAGGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCAGTTGGCCAGAAATCAAAAATAGTGAACAGTGATTACATGGAAATTG</left_flank>
        <right_flank>GAATAAAGGCCTTGGTACTTATCTAAAAAACCCCAATACAAAGATAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCATAATCAAATTTTTTTCAGGTTCTCAATCGATCTGATAACTTCGAAAAAGGACAAATAACTTCTAGAAACTTATATATTCCTGCTCCTTTCATCAATGCTCACCTAATATTGGGAAATGTATCTGTTACACTTGAGCAAAATCGCATAACTATGGAGAAATGCGAGTGAATTTGGCTTGCCTTTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAAGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAAACAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGTCGTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATTGCGACCATTGCACAAATTCCAGTTGGCCAGAAATCAAAAATAGTGAACAGTGATTACATGGAAATTGAGAATAAAGGCCTTGGTACTTATCTAAAAAACCCCAATACAAAGATAAAAAATCTGAAGCTACAATGGAAATTTTCTGGGTATCTTTTTGATATACTCTTGCAAATCTTGACAACTTTTTTCGACGAGCTCACCCAAAACGGAAGGAGTGGCTTTTGCGTCGAAACTCTAGAACTCGTAGAAAACGCTGGAAATAACATTGCTCAAGTGTTGAGGTTGATTGATGTGAACACTATCAAATCGATTGTGATCAATTCCCTGTGCACGATAAAGAAGGATTTCTCAATTTACCACAATGGGAAGAATACGTGATTTTCGACTTTTCGGTGATGCAGAACGTCCATATAATACCATTAACGCCCTTGGAAACGTAGCATCCTTCAGCATTTATCAGCTTAACAACAACGTGGAATTTACTTCCCTAACCATTATTTTTATTCTCATAGTGAGTTGATCCCAGAATTATTGGCAATCCTCAACCAATTTTTTTCAGGTTTTCAAT</canonical>
            <polymorphic>TTCATAATCAAATTTTTTTCAGGTTCTCAATCGATCTGATAACTTCGAAAAAGGACAAATAACTTCTAGAAACTTATATATTCCTGCTCCTTTCATCAATGCTCACCTAATATTGGGAAATGTATCTGTTACACTTGAGCAAAATCGCATAACTATGGAGAAATGCGAGTGAATTTGGCTTGCCTTTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAAGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAAACAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGTCGTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATTGCGACCATTGCACAAATTCCAGTTGGCCAGAAATCAAAAATAGTGAACAGTGATTACATGGAAATTGMGAATAAAGGCCTTGGTACTTATCTAAAAAACCCCAATACAAAGATAAAAAATCTGAAGCTACAATGGAAATTTTCTGGGTATCTTTTTGATATACTCTTGCAAATCTTGACAACTTTTTTCGACGAGCTCACCCAAAACGGAAGGAGTGGCTTTTGCGTCGAAACTCTAGAACTCGTAGAAAACGCTGGAAATAACATTGCTCAAGTGTTGAGGTTGATTGATGTGAACACTATCAAATCGATTGTGATCAATTCCCTGTGCACGATAAAGAAGGATTTCTCAATTTACCACAATGGGAAGAATACGTGATTTTCGACTTTTCGGTGATGCAGAACGTCCATATAATACCATTAACGCCCTTGGAAACGTAGCATCCTTCAGCATTTATCAGCTTAACAACAACGTGGAATTTACTTCCCTAACCATTATTTTTATTCTCATAGTGAGTTGATCCCAGAATTATTGGCAATCCTCAACCAATTTTTTTCAGGTTTTCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCTCTCCAAAAAGTAAGGTTC</pcr_primer_p1>
		<pcr_primer_p2>ATATCAAAAAGATACCCAGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATTGCGACCATTGCACAAATTCCAGTTGGCCAGAAATCAAAAATAGTGAACAGTGATTACATGGAAATTGAGAATAAAGGCCTTGGTACTTATCTAAAAAACCCCAATACAAAGATAAAAAATCTGAAGCTACAATGGAAATTTTCTGGGTATCTTTTTGATAT</canonical_amplicon>
		<polymorphic_amplicon>GTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATTGCGACCATTGCACAAATTCCAGTTGGCCAGAAATCAAAAATAGTGAACAGTGATTACATGGAAATTGMGAATAAAGGCCTTGGTACTTATCTAAAAAACCCCAATACAAAGATAAAAAATCTGAAGCTACAATGGAAATTTTCTGGGTATCTTTTTGATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15536</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>708340</contig_pos>
        <strand>+</strand>
        <context>CATAAAATTG[C/T]GACCATTGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATTG</left_flank>
        <right_flank>GACCATTGCACAAATTCCAGTTGGCCAGAAATCAAAAATAGTGAACAGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAATTACTTTCAAAAGAATTTTTATGTTCATTTTGTCAGTGAGTGGATTTTAGAATAATTTGCATTTCATAATCAAATTTTTTTCAGGTTCTCAATCGATCTGATAACTTCGAAAAAGGACAAATAACTTCTAGAAACTTATATATTCCTGCTCCTTTCATCAATGCTCACCTAATATTGGGAAATGTATCTGTTACACTTGAGCAAAATCGCATAACTATGGAGAAATGCGAGTGAATTTGGCTTGCCTTTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAAGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAAACAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGTCGTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATTGCGACCATTGCACAAATTCCAGTTGGCCAGAAATCAAAAATAGTGAACAGTGATTACATGGAAATTGAGAATAAAGGCCTTGGTACTTATCTAAAAAACCCCAATACAAAGATAAAAAATCTGAAGCTACAATGGAAATTTTCTGGGTATCTTTTTGATATACTCTTGCAAATCTTGACAACTTTTTTCGACGAGCTCACCCAAAACGGAAGGAGTGGCTTTTGCGTCGAAACTCTAGAACTCGTAGAAAACGCTGGAAATAACATTGCTCAAGTGTTGAGGTTGATTGATGTGAACACTATCAAATCGATTGTGATCAATTCCCTGTGCACGATAAAGAAGGATTTCTCAATTTACCACAATGGGAAGAATACGTGATTTTCGACTTTTCGGTGATGCAGAACGTCCATATAATACCATTAACGCCCTTGGAAACGTAGCATCCTTCAGCATTTATCAGCTTAACAACAACGTGGAATTTACTTCCCTAACCATTATTTTT</canonical>
            <polymorphic>GAAATTACTTTCAAAAGAATTTTTATGTTCATTTTGTCAGTGAGTGGATTTTAGAATAATTTGCATTTCATAATCAAATTTTTTTCAGGTTCTCAATCGATCTGATAACTTCGAAAAAGGACAAATAACTTCTAGAAACTTATATATTCCTGCTCCTTTCATCAATGCTCACCTAATATTGGGAAATGTATCTGTTACACTTGAGCAAAATCGCATAACTATGGAGAAATGCGAGTGAATTTGGCTTGCCTTTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAAGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAAACAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGTCGTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATTGYGACCATTGCACAAATTCCAGTTGGCCAGAAATCAAAAATAGTGAACAGTGATTACATGGAAATTGAGAATAAAGGCCTTGGTACTTATCTAAAAAACCCCAATACAAAGATAAAAAATCTGAAGCTACAATGGAAATTTTCTGGGTATCTTTTTGATATACTCTTGCAAATCTTGACAACTTTTTTCGACGAGCTCACCCAAAACGGAAGGAGTGGCTTTTGCGTCGAAACTCTAGAACTCGTAGAAAACGCTGGAAATAACATTGCTCAAGTGTTGAGGTTGATTGATGTGAACACTATCAAATCGATTGTGATCAATTCCCTGTGCACGATAAAGAAGGATTTCTCAATTTACCACAATGGGAAGAATACGTGATTTTCGACTTTTCGGTGATGCAGAACGTCCATATAATACCATTAACGCCCTTGGAAACGTAGCATCCTTCAGCATTTATCAGCTTAACAACAACGTGGAATTTACTTCCCTAACCATTATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATATTCAACTCAACCCACTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCCATGTAATCACTGTTCACTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAAACAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGTCGTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATTGCGACCATTGCACAAATTCCAGTTGGCCAGAAATCAAAAATAGTGAACAGTGATTACATGGAA</canonical_amplicon>
		<polymorphic_amplicon>AATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAAACAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGTCGTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATTGYGACCATTGCACAAATTCCAGTTGGCCAGAAATCAAAAATAGTGAACAGTGATTACATGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15538</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>708197</contig_pos>
        <strand>+</strand>
        <context>GGTMAAMAAR[A/C]AACCCAGAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAAA</left_flank>
        <right_flank>AACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGAAGAACAGTTTCTCGATTCACCACAATGGGAAAGAGTACGAGATTTTCGACTCATCGGTGGCGTGGAACTCCCAGATCACATCCTCAACGCCCTTAGAAATGTATCATTTTTCAACATTGATCAGGATGACGATAACATGGAAATTACTTTCAAAAGAATTTTTATGTTCATTTTGTCAGTGAGTGGATTTTAGAATAATTTGCATTTCATAATCAAATTTTTTTCAGGTTCTCAATCGATCTGATAACTTCGAAAAAGGACAAATAACTTCTAGAAACTTATATATTCCTGCTCCTTTCATCAATGCTCACCTAATATTGGGAAATGTATCTGTTACACTTGAGCAAAATCGCATAACTATGGAGAAATGCGAGTGAATTTGGCTTGCCTTTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAAGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAAACAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGTCGTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATTGCGACCATTGCACAAATTCCAGTTGGCCAGAAATCAAAAATAGTGAACAGTGATTACATGGAAATTGAGAATAAAGGCCTTGGTACTTATCTAAAAAACCCCAATACAAAGATAAAAAATCTGAAGCTACAATGGAAATTTTCTGGGTATCTTTTTGATATACTCTTGCAAATCTTGACAACTTTTTTCGACGAGCTCACCCAAAACGGAAGGAGTGGCTTTTGCGTCGAAACTCTAGAACTCGTAGAAAACGCTGGAAATAACATTGCTCAAGTGTTGAGGTTGATTGATGTGAACACTATCAAATCGATTGTGATCAATTCCCTGTGCACGATAAAGAAGGATTTCTCAATTTACCA</canonical>
            <polymorphic>ACGAAGAACAGTTTCTCGATTCACCACAATGGGAAAGAGTACGAGATTTTCGACTCATCGGTGGCGTGGAACTCCCAGATCACATCCTCAACGCCCTTAGAAATGTATCATTTTTCAACATTGATCAGGATGACGATAACATGGAAATTACTTTCAAAAGAATTTTTATGTTCATTTTGTCAGTGAGTGGATTTTAGAATAATTTGCATTTCATAATCAAATTTTTTTCAGGTTCTCAATCGATCTGATAACTTCGAAAAAGGACAAATAACTTCTAGAAACTTATATATTCCTGCTCCTTTCATCAATGCTCACCTAATATTGGGAAATGTATCTGTTACACTTGAGCAAAATCGCATAACTATGGAGAAATGCGAGTGAATTTGGCTTGCCTTTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAAGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAAAMAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGTCGTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATTGCGACCATTGCACAAATTCCAGTTGGCCAGAAATCAAAAATAGTGAACAGTGATTACATGGAAATTGAGAATAAAGGCCTTGGTACTTATCTAAAAAACCCCAATACAAAGATAAAAAATCTGAAGCTACAATGGAAATTTTCTGGGTATCTTTTTGATATACTCTTGCAAATCTTGACAACTTTTTTCGACGAGCTCACCCAAAACGGAAGGAGTGGCTTTTGCGTCGAAACTCTAGAACTCGTAGAAAACGCTGGAAATAACATTGCTCAAGTGTTGAGGTTGATTGATGTGAACACTATCAAATCGATTGTGATCAATTCCCTGTGCACGATAAAGAAGGATTTCTCAATTTACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTAATCATAACGCCTCATT</pcr_primer_p1>
		<pcr_primer_p2>AATTTTATGGTTCTGAAAGGTCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAAGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAAACAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGTCGTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATT</canonical_amplicon>
		<polymorphic_amplicon>TTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAAGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAAAMAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGTCGTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15539</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>708196</contig_pos>
        <strand>+</strand>
        <context>AGGTMAAMAA[A/G]MAACCCAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAA</left_flank>
        <right_flank>CAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGAAGAACAGTTTCTCGATTCACCACAATGGGAAAGAGTACGAGATTTTCGACTCATCGGTGGCGTGGAACTCCCAGATCACATCCTCAACGCCCTTAGAAATGTATCATTTTTCAACATTGATCAGGATGACGATAACATGGAAATTACTTTCAAAAGAATTTTTATGTTCATTTTGTCAGTGAGTGGATTTTAGAATAATTTGCATTTCATAATCAAATTTTTTTCAGGTTCTCAATCGATCTGATAACTTCGAAAAAGGACAAATAACTTCTAGAAACTTATATATTCCTGCTCCTTTCATCAATGCTCACCTAATATTGGGAAATGTATCTGTTACACTTGAGCAAAATCGCATAACTATGGAGAAATGCGAGTGAATTTGGCTTGCCTTTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAAGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAAACAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGTCGTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATTGCGACCATTGCACAAATTCCAGTTGGCCAGAAATCAAAAATAGTGAACAGTGATTACATGGAAATTGAGAATAAAGGCCTTGGTACTTATCTAAAAAACCCCAATACAAAGATAAAAAATCTGAAGCTACAATGGAAATTTTCTGGGTATCTTTTTGATATACTCTTGCAAATCTTGACAACTTTTTTCGACGAGCTCACCCAAAACGGAAGGAGTGGCTTTTGCGTCGAAACTCTAGAACTCGTAGAAAACGCTGGAAATAACATTGCTCAAGTGTTGAGGTTGATTGATGTGAACACTATCAAATCGATTGTGATCAATTCCCTGTGCACGATAAAGAAGGATTTCTCAATTTACC</canonical>
            <polymorphic>GACGAAGAACAGTTTCTCGATTCACCACAATGGGAAAGAGTACGAGATTTTCGACTCATCGGTGGCGTGGAACTCCCAGATCACATCCTCAACGCCCTTAGAAATGTATCATTTTTCAACATTGATCAGGATGACGATAACATGGAAATTACTTTCAAAAGAATTTTTATGTTCATTTTGTCAGTGAGTGGATTTTAGAATAATTTGCATTTCATAATCAAATTTTTTTCAGGTTCTCAATCGATCTGATAACTTCGAAAAAGGACAAATAACTTCTAGAAACTTATATATTCCTGCTCCTTTCATCAATGCTCACCTAATATTGGGAAATGTATCTGTTACACTTGAGCAAAATCGCATAACTATGGAGAAATGCGAGTGAATTTGGCTTGCCTTTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAAGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAARCAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGTCGTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATTGCGACCATTGCACAAATTCCAGTTGGCCAGAAATCAAAAATAGTGAACAGTGATTACATGGAAATTGAGAATAAAGGCCTTGGTACTTATCTAAAAAACCCCAATACAAAGATAAAAAATCTGAAGCTACAATGGAAATTTTCTGGGTATCTTTTTGATATACTCTTGCAAATCTTGACAACTTTTTTCGACGAGCTCACCCAAAACGGAAGGAGTGGCTTTTGCGTCGAAACTCTAGAACTCGTAGAAAACGCTGGAAATAACATTGCTCAAGTGTTGAGGTTGATTGATGTGAACACTATCAAATCGATTGTGATCAATTCCCTGTGCACGATAAAGAAGGATTTCTCAATTTACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTAATCATAACGCCTCATT</pcr_primer_p1>
		<pcr_primer_p2>AATTTTATGGTTCTGAAAGGTCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAAGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAAACAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGTCGTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATT</canonical_amplicon>
		<polymorphic_amplicon>TTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAAGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAARCAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGTCGTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15540</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>708193</contig_pos>
        <strand>+</strand>
        <context>AAGAGGTMAA[A/C]AARMAACCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAA</left_flank>
        <right_flank>AAACAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGACGAAGAACAGTTTCTCGATTCACCACAATGGGAAAGAGTACGAGATTTTCGACTCATCGGTGGCGTGGAACTCCCAGATCACATCCTCAACGCCCTTAGAAATGTATCATTTTTCAACATTGATCAGGATGACGATAACATGGAAATTACTTTCAAAAGAATTTTTATGTTCATTTTGTCAGTGAGTGGATTTTAGAATAATTTGCATTTCATAATCAAATTTTTTTCAGGTTCTCAATCGATCTGATAACTTCGAAAAAGGACAAATAACTTCTAGAAACTTATATATTCCTGCTCCTTTCATCAATGCTCACCTAATATTGGGAAATGTATCTGTTACACTTGAGCAAAATCGCATAACTATGGAGAAATGCGAGTGAATTTGGCTTGCCTTTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAAGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAAACAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGTCGTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATTGCGACCATTGCACAAATTCCAGTTGGCCAGAAATCAAAAATAGTGAACAGTGATTACATGGAAATTGAGAATAAAGGCCTTGGTACTTATCTAAAAAACCCCAATACAAAGATAAAAAATCTGAAGCTACAATGGAAATTTTCTGGGTATCTTTTTGATATACTCTTGCAAATCTTGACAACTTTTTTCGACGAGCTCACCCAAAACGGAAGGAGTGGCTTTTGCGTCGAAACTCTAGAACTCGTAGAAAACGCTGGAAATAACATTGCTCAAGTGTTGAGGTTGATTGATGTGAACACTATCAAATCGATTGTGATCAATTCCCTGTGCACGATAAAGAAGGATTTCTCAATTT</canonical>
            <polymorphic>CATGACGAAGAACAGTTTCTCGATTCACCACAATGGGAAAGAGTACGAGATTTTCGACTCATCGGTGGCGTGGAACTCCCAGATCACATCCTCAACGCCCTTAGAAATGTATCATTTTTCAACATTGATCAGGATGACGATAACATGGAAATTACTTTCAAAAGAATTTTTATGTTCATTTTGTCAGTGAGTGGATTTTAGAATAATTTGCATTTCATAATCAAATTTTTTTCAGGTTCTCAATCGATCTGATAACTTCGAAAAAGGACAAATAACTTCTAGAAACTTATATATTCCTGCTCCTTTCATCAATGCTCACCTAATATTGGGAAATGTATCTGTTACACTTGAGCAAAATCGCATAACTATGGAGAAATGCGAGTGAATTTGGCTTGCCTTTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAAGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAMAAACAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGTCGTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATTGCGACCATTGCACAAATTCCAGTTGGCCAGAAATCAAAAATAGTGAACAGTGATTACATGGAAATTGAGAATAAAGGCCTTGGTACTTATCTAAAAAACCCCAATACAAAGATAAAAAATCTGAAGCTACAATGGAAATTTTCTGGGTATCTTTTTGATATACTCTTGCAAATCTTGACAACTTTTTTCGACGAGCTCACCCAAAACGGAAGGAGTGGCTTTTGCGTCGAAACTCTAGAACTCGTAGAAAACGCTGGAAATAACATTGCTCAAGTGTTGAGGTTGATTGATGTGAACACTATCAAATCGATTGTGATCAATTCCCTGTGCACGATAAAGAAGGATTTCTCAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTAATCATAACGCCTCATT</pcr_primer_p1>
		<pcr_primer_p2>AATTTTATGGTTCTGAAAGGTCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAAGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAAACAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGTCGTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATT</canonical_amplicon>
		<polymorphic_amplicon>TTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAAGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAMAAACAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGTCGTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15541</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>708141</contig_pos>
        <strand>+</strand>
        <context>TTCTGAAAAA[A/G]ATTATTGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAA</left_flank>
        <right_flank>ATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATGTGAACACTATCACCTCTCTCAGAATCAATTGTGATGGTGCCCATCTGCATGACGAAGAACAGTTTCTCGATTCACCACAATGGGAAAGAGTACGAGATTTTCGACTCATCGGTGGCGTGGAACTCCCAGATCACATCCTCAACGCCCTTAGAAATGTATCATTTTTCAACATTGATCAGGATGACGATAACATGGAAATTACTTTCAAAAGAATTTTTATGTTCATTTTGTCAGTGAGTGGATTTTAGAATAATTTGCATTTCATAATCAAATTTTTTTCAGGTTCTCAATCGATCTGATAACTTCGAAAAAGGACAAATAACTTCTAGAAACTTATATATTCCTGCTCCTTTCATCAATGCTCACCTAATATTGGGAAATGTATCTGTTACACTTGAGCAAAATCGCATAACTATGGAGAAATGCGAGTGAATTTGGCTTGCCTTTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAAGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAAACAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGTCGTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATTGCGACCATTGCACAAATTCCAGTTGGCCAGAAATCAAAAATAGTGAACAGTGATTACATGGAAATTGAGAATAAAGGCCTTGGTACTTATCTAAAAAACCCCAATACAAAGATAAAAAATCTGAAGCTACAATGGAAATTTTCTGGGTATCTTTTTGATATACTCTTGCAAATCTTGACAACTTTTTTCGACGAGCTCACCCAAAACGGAAGGAGTGGCTTTTGCGTCGAAACTCTAGAACTCGTAGAAAACGCTGGAAATAACATTGCTCAAGTGTTGAGGTTGATTGATGTGAACACTATC</canonical>
            <polymorphic>TGATGTGAACACTATCACCTCTCTCAGAATCAATTGTGATGGTGCCCATCTGCATGACGAAGAACAGTTTCTCGATTCACCACAATGGGAAAGAGTACGAGATTTTCGACTCATCGGTGGCGTGGAACTCCCAGATCACATCCTCAACGCCCTTAGAAATGTATCATTTTTCAACATTGATCAGGATGACGATAACATGGAAATTACTTTCAAAAGAATTTTTATGTTCATTTTGTCAGTGAGTGGATTTTAGAATAATTTGCATTTCATAATCAAATTTTTTTCAGGTTCTCAATCGATCTGATAACTTCGAAAAAGGACAAATAACTTCTAGAAACTTATATATTCCTGCTCCTTTCATCAATGCTCACCTAATATTGGGAAATGTATCTGTTACACTTGAGCAAAATCGCATAACTATGGAGAAATGCGAGTGAATTTGGCTTGCCTTTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAARATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAAACAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGTCGTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATTGCGACCATTGCACAAATTCCAGTTGGCCAGAAATCAAAAATAGTGAACAGTGATTACATGGAAATTGAGAATAAAGGCCTTGGTACTTATCTAAAAAACCCCAATACAAAGATAAAAAATCTGAAGCTACAATGGAAATTTTCTGGGTATCTTTTTGATATACTCTTGCAAATCTTGACAACTTTTTTCGACGAGCTCACCCAAAACGGAAGGAGTGGCTTTTGCGTCGAAACTCTAGAACTCGTAGAAAACGCTGGAAATAACATTGCTCAAGTGTTGAGGTTGATTGATGTGAACACTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTATATATTCCTGCTCCTTTCA</pcr_primer_p1>
		<pcr_primer_p2>GTATGTCGTTTTCGATTATCTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTATATATTCCTGCTCCTTTCATCAATGCTCACCTAATATTGGGAAATGTATCTGTTACACTTGAGCAAAATCGCATAACTATGGAGAAATGCGAGTGAATTTGGCTTGCCTTTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAAGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAAACAACCCAGAACAGATAATCGAAAACGACATAC</canonical_amplicon>
		<polymorphic_amplicon>CTTATATATTCCTGCTCCTTTCATCAATGCTCACCTAATATTGGGAAATGTATCTGTTACACTTGAGCAAAATCGCATAACTATGGAGAAATGCGAGTGAATTTGGCTTGCCTTTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAARATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAAACAACCCAGAACAGATAATCGAAAACGACATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15544</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>717572</contig_pos>
        <strand></strand>
        <context>TCAATAACAT[A/G]TATCACAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTAAAAAAGGAAACGTGAAACCTGATGAATAGTTATTTCAATAACAT</left_flank>
        <right_flank>TATCACAATTAAATCACAATTAAAAAAATCATTTATCTTGATCGCTTCCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACGGTGTTGGAGGATCCTCAGGAGAAGCTGGACCAGGACCAGCCGGACCACCAGGACCAGCCGGACCCCCAGGATCTGACGGACAACCTGGAGCAGCAGGAGGAGCCGGAGCACCAGGACCAAAGGGACCACCAGGACCAGCAGGACAGCCAGGAAGCGATGGAAATCCAGGAGCTCCAGGACAGCCAGGAAACGCTGGAGGACAAGGAGAGAAGGGAATCTGTCCAAAATACTGCGCTATCGATGGAGGAATCTTCTTCGAAGACGGAACTCGTCGTCGTCGTTAGACGCGATGCATTGTTGCTGCCTATTATGCTTGAGTCGACCATTAAGTCTGGACTCGCATTTTATAATAATTTTTCTGACAGAAATAAAATTTTCATTCAAAAATCATTGGAAATGTAAACATTGAAAAATATCACATAACTCAAAAATTTGCCGGTAAAGAAATTAAAAAAGGAAACGTGAAACCTGATGAATAGTTATTTCAATAACATATATCACAATTAAATCACAATTAAAAAAATCATTTATCTTGATCGCTTCCAACTGAGCTATGTTTTCCAACAATTCCCTTATCCACTTCATTCCTCATTCTCTGTTCTGCTTCAAACTCTTTTATACAGCGAGCTCTCATTTCAATGTAGTCGTACACCTAGACAGAAAAATTGAAATTATTATCATCGTTCTTTGTTTCTAAATATTACCTGACTCTCCTTCACTTTCGCAATCGCCGCTAAATTCACCACTAGTTGTCTGCTAACTTGATTGGATTTTTGCAACAAAAATTCAAGAATTAGCATCTGTTGAGGGAGATCGTCAAGAGTGAGGATTCCACGTAGGTACTTTGCTATGCACGTTTCTCTTGCTAAATTCATGTAGGAATTAATCTAAAATTTAGAAAAATACGGTAACCCTATTTTGATAAACGAGCCACTCACAATCGGTGCGCTTTCCATGAATGGTTGATTTATGAAAAGACGCTTCATTATTTTATC</canonical>
            <polymorphic>AGACGGTGTTGGAGGATCCTCAGGAGAAGCTGGACCAGGACCAGCCGGACCACCAGGACCAGCCGGACCCCCAGGATCTGACGGACAACCTGGAGCAGCAGGAGGAGCCGGAGCACCAGGACCAAAGGGACCACCAGGACCAGCAGGACAGCCAGGAAGCGATGGAAATCCAGGAGCTCCAGGACAGCCAGGAAACGCTGGAGGACAAGGAGAGAAGGGAATCTGTCCAAAATACTGCGCTATCGATGGAGGAATCTTCTTCGAAGACGGAACTCGTCGTCGTCGTTAGACGCGATGCATTGTTGCTGCCTATTATGCTTGAGTCGACCATTAAGTCTGGACTCGCATTTTATAATAATTTTTCTGACAGAAATAAAATTTTCATTCAAAAATCATTGGAAATGTAAACATTGAAAAATATCACATAACTCAAAAATTTGCCGGTAAAGAAATTAAAAAAGGAAACGTGAAACCTGATGAATAGTTATTTCAATAACATRTATCACAATTAAATCACAATTAAAAAAATCATTTATCTTGATCGCTTCCAACTGAGCTATGTTTTCCAACAATTCCCTTATCCACTTCATTCCTCATTCTCTGTTCTGCTTCAAACTCTTTTATACAGCGAGCTCTCATTTCAATGTAGTCGTACACCTAGACAGAAAAATTGAAATTATTATCATCGTTCTTTGTTTCTAAATATTACCTGACTCTCCTTCACTTTCGCAATCGCCGCTAAATTCACCACTAGTTGTCTGCTAACTTGATTGGATTTTTGCAACAAAAATTCAAGAATTAGCATCTGTTGAGGGAGATCGTCAAGAGTGAGGATTCCACGTAGGTACTTTGCTATGCACGTTTCTCTTGCTAAATTCATGTAGGAATTAATCTAAAATTTAGAAAAATACGGTAACCCTATTTTGATAAACGAGCCACTCACAATCGGTGCGCTTTCCATGAATGGTTGATTTATGAAAAGACGCTTCATTATTTTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCAAAAATCATTGGAAATGTA</pcr_primer_p1>
		<pcr_primer_p2>CTCGCTGTATAAAAGAGTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTCAAAAATCATTGGAAATGTAAACATTGAAAAATATCACATAACTCAAAAATTTGCCGGTAAAGAAATTAAAAAAGGAAACGTGAAACCTGATGAATAGTTATTTCAATAACATATATCACAATTAAATCACAATTAAAAAAATCATTTATCTTGATCGCTTCCAACTGAGCTATGTTTTCCAACAATTCCCTTATCCACTTCATTCCTCATTCTCTGTTCTGCTTCAAACTCTTTTATACAGCGAG</canonical_amplicon>
		<polymorphic_amplicon>ATTCAAAAATCATTGGAAATGTAAACATTGAAAAATATCACATAACTCAAAAATTTGCCGGTAAAGAAATTAAAAAAGGAAACGTGAAACCTGATGAATAGTTATTTCAATAACATRTATCACAATTAAATCACAATTAAAAAAATCATTTATCTTGATCGCTTCCAACTGAGCTATGTTTTCCAACAATTCCCTTATCCACTTCATTCCTCATTCTCTGTTCTGCTTCAAACTCTTTTATACAGCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15545</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>717600</contig_pos>
        <strand></strand>
        <context>AATTAAAAAA[A/G]TCATTTATCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAATAGTTATTTCAATAACATATATCACAATTAAATCACAATTAAAAAA</left_flank>
        <right_flank>TCATTTATCTTGATCGCTTCCAACTGAGCTATGTTTTCCAACAATTCCCT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTGGACCAGGACCAGCCGGACCACCAGGACCAGCCGGACCCCCAGGATCTGACGGACAACCTGGAGCAGCAGGAGGAGCCGGAGCACCAGGACCAAAGGGACCACCAGGACCAGCAGGACAGCCAGGAAGCGATGGAAATCCAGGAGCTCCAGGACAGCCAGGAAACGCTGGAGGACAAGGAGAGAAGGGAATCTGTCCAAAATACTGCGCTATCGATGGAGGAATCTTCTTCGAAGACGGAACTCGTCGTCGTCGTTAGACGCGATGCATTGTTGCTGCCTATTATGCTTGAGTCGACCATTAAGTCTGGACTCGCATTTTATAATAATTTTTCTGACAGAAATAAAATTTTCATTCAAAAATCATTGGAAATGTAAACATTGAAAAATATCACATAACTCAAAAATTTGCCGGTAAAGAAATTAAAAAAGGAAACGTGAAACCTGATGAATAGTTATTTCAATAACATATATCACAATTAAATCACAATTAAAAAAATCATTTATCTTGATCGCTTCCAACTGAGCTATGTTTTCCAACAATTCCCTTATCCACTTCATTCCTCATTCTCTGTTCTGCTTCAAACTCTTTTATACAGCGAGCTCTCATTTCAATGTAGTCGTACACCTAGACAGAAAAATTGAAATTATTATCATCGTTCTTTGTTTCTAAATATTACCTGACTCTCCTTCACTTTCGCAATCGCCGCTAAATTCACCACTAGTTGTCTGCTAACTTGATTGGATTTTTGCAACAAAAATTCAAGAATTAGCATCTGTTGAGGGAGATCGTCAAGAGTGAGGATTCCACGTAGGTACTTTGCTATGCACGTTTCTCTTGCTAAATTCATGTAGGAATTAATCTAAAATTTAGAAAAATACGGTAACCCTATTTTGATAAACGAGCCACTCACAATCGGTGCGCTTTCCATGAATGGTTGATTTATGAAAAGACGCTTCATTATTTTATCTTGGAACGTCTCCATTTCTAAAGCTTTT</canonical>
            <polymorphic>GCTGGACCAGGACCAGCCGGACCACCAGGACCAGCCGGACCCCCAGGATCTGACGGACAACCTGGAGCAGCAGGAGGAGCCGGAGCACCAGGACCAAAGGGACCACCAGGACCAGCAGGACAGCCAGGAAGCGATGGAAATCCAGGAGCTCCAGGACAGCCAGGAAACGCTGGAGGACAAGGAGAGAAGGGAATCTGTCCAAAATACTGCGCTATCGATGGAGGAATCTTCTTCGAAGACGGAACTCGTCGTCGTCGTTAGACGCGATGCATTGTTGCTGCCTATTATGCTTGAGTCGACCATTAAGTCTGGACTCGCATTTTATAATAATTTTTCTGACAGAAATAAAATTTTCATTCAAAAATCATTGGAAATGTAAACATTGAAAAATATCACATAACTCAAAAATTTGCCGGTAAAGAAATTAAAAAAGGAAACGTGAAACCTGATGAATAGTTATTTCAATAACATATATCACAATTAAATCACAATTAAAAAARTCATTTATCTTGATCGCTTCCAACTGAGCTATGTTTTCCAACAATTCCCTTATCCACTTCATTCCTCATTCTCTGTTCTGCTTCAAACTCTTTTATACAGCGAGCTCTCATTTCAATGTAGTCGTACACCTAGACAGAAAAATTGAAATTATTATCATCGTTCTTTGTTTCTAAATATTACCTGACTCTCCTTCACTTTCGCAATCGCCGCTAAATTCACCACTAGTTGTCTGCTAACTTGATTGGATTTTTGCAACAAAAATTCAAGAATTAGCATCTGTTGAGGGAGATCGTCAAGAGTGAGGATTCCACGTAGGTACTTTGCTATGCACGTTTCTCTTGCTAAATTCATGTAGGAATTAATCTAAAATTTAGAAAAATACGGTAACCCTATTTTGATAAACGAGCCACTCACAATCGGTGCGCTTTCCATGAATGGTTGATTTATGAAAAGACGCTTCATTATTTTATCTTGGAACGTCTCCATTTCTAAAGCTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCAAAAATCATTGGAAATGTA</pcr_primer_p1>
		<pcr_primer_p2>CTCGCTGTATAAAAGAGTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTCAAAAATCATTGGAAATGTAAACATTGAAAAATATCACATAACTCAAAAATTTGCCGGTAAAGAAATTAAAAAAGGAAACGTGAAACCTGATGAATAGTTATTTCAATAACATATATCACAATTAAATCACAATTAAAAAAATCATTTATCTTGATCGCTTCCAACTGAGCTATGTTTTCCAACAATTCCCTTATCCACTTCATTCCTCATTCTCTGTTCTGCTTCAAACTCTTTTATACAGCGAG</canonical_amplicon>
		<polymorphic_amplicon>ATTCAAAAATCATTGGAAATGTAAACATTGAAAAATATCACATAACTCAAAAATTTGCCGGTAAAGAAATTAAAAAAGGAAACGTGAAACCTGATGAATAGTTATTTCAATAACATATATCACAATTAAATCACAATTAAAAAARTCATTTATCTTGATCGCTTCCAACTGAGCTATGTTTTCCAACAATTCCCTTATCCACTTCATTCCTCATTCTCTGTTCTGCTTCAAACTCTTTTATACAGCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15546</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>717629</contig_pos>
        <strand></strand>
        <context>TCCAACTGAG[C/T]TATGTTTTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTAAATCACAATTAAAAAAATCATTTATCTTGATCGCTTCCAACTGAG</left_flank>
        <right_flank>TATGTTTTCCAACAATTCCCTTATCCACTTCATTCCTCATTCTCTGTTCT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCAGCCGGACCCCCAGGATCTGACGGACAACCTGGAGCAGCAGGAGGAGCCGGAGCACCAGGACCAAAGGGACCACCAGGACCAGCAGGACAGCCAGGAAGCGATGGAAATCCAGGAGCTCCAGGACAGCCAGGAAACGCTGGAGGACAAGGAGAGAAGGGAATCTGTCCAAAATACTGCGCTATCGATGGAGGAATCTTCTTCGAAGACGGAACTCGTCGTCGTCGTTAGACGCGATGCATTGTTGCTGCCTATTATGCTTGAGTCGACCATTAAGTCTGGACTCGCATTTTATAATAATTTTTCTGACAGAAATAAAATTTTCATTCAAAAATCATTGGAAATGTAAACATTGAAAAATATCACATAACTCAAAAATTTGCCGGTAAAGAAATTAAAAAAGGAAACGTGAAACCTGATGAATAGTTATTTCAATAACATATATCACAATTAAATCACAATTAAAAAAATCATTTATCTTGATCGCTTCCAACTGAGCTATGTTTTCCAACAATTCCCTTATCCACTTCATTCCTCATTCTCTGTTCTGCTTCAAACTCTTTTATACAGCGAGCTCTCATTTCAATGTAGTCGTACACCTAGACAGAAAAATTGAAATTATTATCATCGTTCTTTGTTTCTAAATATTACCTGACTCTCCTTCACTTTCGCAATCGCCGCTAAATTCACCACTAGTTGTCTGCTAACTTGATTGGATTTTTGCAACAAAAATTCAAGAATTAGCATCTGTTGAGGGAGATCGTCAAGAGTGAGGATTCCACGTAGGTACTTTGCTATGCACGTTTCTCTTGCTAAATTCATGTAGGAATTAATCTAAAATTTAGAAAAATACGGTAACCCTATTTTGATAAACGAGCCACTCACAATCGGTGCGCTTTCCATGAATGGTTGATTTATGAAAAGACGCTTCATTATTTTATCTTGGAACGTCTCCATTTCTAAAGCTTTTACGGATTGTTTTCCAGTTGGGAGGTCGTC</canonical>
            <polymorphic>ACCAGCCGGACCCCCAGGATCTGACGGACAACCTGGAGCAGCAGGAGGAGCCGGAGCACCAGGACCAAAGGGACCACCAGGACCAGCAGGACAGCCAGGAAGCGATGGAAATCCAGGAGCTCCAGGACAGCCAGGAAACGCTGGAGGACAAGGAGAGAAGGGAATCTGTCCAAAATACTGCGCTATCGATGGAGGAATCTTCTTCGAAGACGGAACTCGTCGTCGTCGTTAGACGCGATGCATTGTTGCTGCCTATTATGCTTGAGTCGACCATTAAGTCTGGACTCGCATTTTATAATAATTTTTCTGACAGAAATAAAATTTTCATTCAAAAATCATTGGAAATGTAAACATTGAAAAATATCACATAACTCAAAAATTTGCCGGTAAAGAAATTAAAAAAGGAAACGTGAAACCTGATGAATAGTTATTTCAATAACATATATCACAATTAAATCACAATTAAAAAAATCATTTATCTTGATCGCTTCCAACTGAGYTATGTTTTCCAACAATTCCCTTATCCACTTCATTCCTCATTCTCTGTTCTGCTTCAAACTCTTTTATACAGCGAGCTCTCATTTCAATGTAGTCGTACACCTAGACAGAAAAATTGAAATTATTATCATCGTTCTTTGTTTCTAAATATTACCTGACTCTCCTTCACTTTCGCAATCGCCGCTAAATTCACCACTAGTTGTCTGCTAACTTGATTGGATTTTTGCAACAAAAATTCAAGAATTAGCATCTGTTGAGGGAGATCGTCAAGAGTGAGGATTCCACGTAGGTACTTTGCTATGCACGTTTCTCTTGCTAAATTCATGTAGGAATTAATCTAAAATTTAGAAAAATACGGTAACCCTATTTTGATAAACGAGCCACTCACAATCGGTGCGCTTTCCATGAATGGTTGATTTATGAAAAGACGCTTCATTATTTTATCTTGGAACGTCTCCATTTCTAAAGCTTTTACGGATTGTTTTCCAGTTGGGAGGTCGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>391 380 119 76 34</canonical_bands>
                <polymorphic_bands>456 391 119 34</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>369 303 88 76 45 44 34 25 11 5</canonical_bands>
                <polymorphic_bands>445 303 88 45 44 34 25 11 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCAAAAATCATTGGAAATGTA</pcr_primer_p1>
		<pcr_primer_p2>CTCGCTGTATAAAAGAGTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTCAAAAATCATTGGAAATGTAAACATTGAAAAATATCACATAACTCAAAAATTTGCCGGTAAAGAAATTAAAAAAGGAAACGTGAAACCTGATGAATAGTTATTTCAATAACATATATCACAATTAAATCACAATTAAAAAAATCATTTATCTTGATCGCTTCCAACTGAGCTATGTTTTCCAACAATTCCCTTATCCACTTCATTCCTCATTCTCTGTTCTGCTTCAAACTCTTTTATACAGCGAG</canonical_amplicon>
		<polymorphic_amplicon>ATTCAAAAATCATTGGAAATGTAAACATTGAAAAATATCACATAACTCAAAAATTTGCCGGTAAAGAAATTAAAAAAGGAAACGTGAAACCTGATGAATAGTTATTTCAATAACATATATCACAATTAAATCACAATTAAAAAAATCATTTATCTTGATCGCTTCCAACTGAGYTATGTTTTCCAACAATTCCCTTATCCACTTCATTCCTCATTCTCTGTTCTGCTTCAAACTCTTTTATACAGCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15547</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>717896</contig_pos>
        <strand></strand>
        <context>GGAGATCGTC[A/G]AGAGTGAGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTTTTGCAACAAAAATTCAAGAATTAGCATCTGTTGAGGGAGATCGTC</left_flank>
        <right_flank>AGAGTGAGGATTCCACGTAGGTACTTTGCTATGCACGTTTCTCTTGCTAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACCATTAAGTCTGGACTCGCATTTTATAATAATTTTTCTGACAGAAATAAAATTTTCATTCAAAAATCATTGGAAATGTAAACATTGAAAAATATCACATAACTCAAAAATTTGCCGGTAAAGAAATTAAAAAAGGAAACGTGAAACCTGATGAATAGTTATTTCAATAACATATATCACAATTAAATCACAATTAAAAAAATCATTTATCTTGATCGCTTCCAACTGAGCTATGTTTTCCAACAATTCCCTTATCCACTTCATTCCTCATTCTCTGTTCTGCTTCAAACTCTTTTATACAGCGAGCTCTCATTTCAATGTAGTCGTACACCTAGACAGAAAAATTGAAATTATTATCATCGTTCTTTGTTTCTAAATATTACCTGACTCTCCTTCACTTTCGCAATCGCCGCTAAATTCACCACTAGTTGTCTGCTAACTTGATTGGATTTTTGCAACAAAAATTCAAGAATTAGCATCTGTTGAGGGAGATCGTCAAGAGTGAGGATTCCACGTAGGTACTTTGCTATGCACGTTTCTCTTGCTAAATTCATGTAGGAATTAATCTAAAATTTAGAAAAATACGGTAACCCTATTTTGATAAACGAGCCACTCACAATCGGTGCGCTTTCCATGAATGGTTGATTTATGAAAAGACGCTTCATTATTTTATCTTGGAACGTCTCCATTTCTAAAGCTTTTACGGATTGTTTTCCAGTTGGGAGGTCGTCTCCGGGATTTTTGGATAGTGTAGTTTCTGATAGAATCTTTTCTTTCCCTTCAGATTCCACATTTTTTTCTTCTTTCTCATTTATGGTTCTGGAATGCACAAAATTCACATTTCCATGAATCGCAATCAACTTTTCTCTCATAGAAATATAGTTGTGCACCTATAACAACTTGCATTGTTAACGCAAGAACAAATTTAGTACCTCTCGTCGCTTCACCTTCAGTTTGTTTGATATTTTTGCCACATTCTTCATGCTGGGTCTGCATTT</canonical>
            <polymorphic>CGACCATTAAGTCTGGACTCGCATTTTATAATAATTTTTCTGACAGAAATAAAATTTTCATTCAAAAATCATTGGAAATGTAAACATTGAAAAATATCACATAACTCAAAAATTTGCCGGTAAAGAAATTAAAAAAGGAAACGTGAAACCTGATGAATAGTTATTTCAATAACATATATCACAATTAAATCACAATTAAAAAAATCATTTATCTTGATCGCTTCCAACTGAGCTATGTTTTCCAACAATTCCCTTATCCACTTCATTCCTCATTCTCTGTTCTGCTTCAAACTCTTTTATACAGCGAGCTCTCATTTCAATGTAGTCGTACACCTAGACAGAAAAATTGAAATTATTATCATCGTTCTTTGTTTCTAAATATTACCTGACTCTCCTTCACTTTCGCAATCGCCGCTAAATTCACCACTAGTTGTCTGCTAACTTGATTGGATTTTTGCAACAAAAATTCAAGAATTAGCATCTGTTGAGGGAGATCGTCRAGAGTGAGGATTCCACGTAGGTACTTTGCTATGCACGTTTCTCTTGCTAAATTCATGTAGGAATTAATCTAAAATTTAGAAAAATACGGTAACCCTATTTTGATAAACGAGCCACTCACAATCGGTGCGCTTTCCATGAATGGTTGATTTATGAAAAGACGCTTCATTATTTTATCTTGGAACGTCTCCATTTCTAAAGCTTTTACGGATTGTTTTCCAGTTGGGAGGTCGTCTCCGGGATTTTTGGATAGTGTAGTTTCTGATAGAATCTTTTCTTTCCCTTCAGATTCCACATTTTTTTCTTCTTTCTCATTTATGGTTCTGGAATGCACAAAATTCACATTTCCATGAATCGCAATCAACTTTTCTCTCATAGAAATATAGTTGTGCACCTATAACAACTTGCATTGTTAACGCAAGAACAAATTTAGTACCTCTCGTCGCTTCACCTTCAGTTTGTTTGATATTTTTGCCACATTCTTCATGCTGGGTCTGCATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCACTAGTTGTCTGCTAACTT</pcr_primer_p1>
		<pcr_primer_p2>TAATGAAGCGTCTTTTCATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CACCACTAGTTGTCTGCTAACTTGATTGGATTTTTGCAACAAAAATTCAAGAATTAGCATCTGTTGAGGGAGATCGTCAAGAGTGAGGATTCCACGTAGGTACTTTGCTATGCACGTTTCTCTTGCTAAATTCATGTAGGAATTAATCTAAAATTTAGAAAAATACGGTAACCCTATTTTGATAAACGAGCCACTCACAATCGGTGCGCTTTCCATGAATGGTTGATTTATGAAAAGACGCTTCATTA</canonical_amplicon>
		<polymorphic_amplicon>CACCACTAGTTGTCTGCTAACTTGATTGGATTTTTGCAACAAAAATTCAAGAATTAGCATCTGTTGAGGGAGATCGTCRAGAGTGAGGATTCCACGTAGGTACTTTGCTATGCACGTTTCTCTTGCTAAATTCATGTAGGAATTAATCTAAAATTTAGAAAAATACGGTAACCCTATTTTGATAAACGAGCCACTCACAATCGGTGCGCTTTCCATGAATGGTTGATTTATGAAAAGACGCTTCATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15548</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>717947</contig_pos>
        <strand></strand>
        <context>CTCTTGCTAA[A/C]TTCATGTAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAGTGAGGATTCCACGTAGGTACTTTGCTATGCACGTTTCTCTTGCTAA</left_flank>
        <right_flank>TTCATGTAGGAATTAATCTAAAATTTAGAAAAATACGGTAACCCTATTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTTCATTCAAAAATCATTGGAAATGTAAACATTGAAAAATATCACATAACTCAAAAATTTGCCGGTAAAGAAATTAAAAAAGGAAACGTGAAACCTGATGAATAGTTATTTCAATAACATATATCACAATTAAATCACAATTAAAAAAATCATTTATCTTGATCGCTTCCAACTGAGCTATGTTTTCCAACAATTCCCTTATCCACTTCATTCCTCATTCTCTGTTCTGCTTCAAACTCTTTTATACAGCGAGCTCTCATTTCAATGTAGTCGTACACCTAGACAGAAAAATTGAAATTATTATCATCGTTCTTTGTTTCTAAATATTACCTGACTCTCCTTCACTTTCGCAATCGCCGCTAAATTCACCACTAGTTGTCTGCTAACTTGATTGGATTTTTGCAACAAAAATTCAAGAATTAGCATCTGTTGAGGGAGATCGTCAAGAGTGAGGATTCCACGTAGGTACTTTGCTATGCACGTTTCTCTTGCTAAATTCATGTAGGAATTAATCTAAAATTTAGAAAAATACGGTAACCCTATTTTGATAAACGAGCCACTCACAATCGGTGCGCTTTCCATGAATGGTTGATTTATGAAAAGACGCTTCATTATTTTATCTTGGAACGTCTCCATTTCTAAAGCTTTTACGGATTGTTTTCCAGTTGGGAGGTCGTCTCCGGGATTTTTGGATAGTGTAGTTTCTGATAGAATCTTTTCTTTCCCTTCAGATTCCACATTTTTTTCTTCTTTCTCATTTATGGTTCTGGAATGCACAAAATTCACATTTCCATGAATCGCAATCAACTTTTCTCTCATAGAAATATAGTTGTGCACCTATAACAACTTGCATTGTTAACGCAAGAACAAATTTAGTACCTCTCGTCGCTTCACCTTCAGTTTGTTTGATATTTTTGCCACATTCTTCATGCTGGGTCTGCATTTTCTTGCAAACATTGTTCAATAACTTGCATTTTCTTAGGCATGTTAAATACA</canonical>
            <polymorphic>AAATTTTCATTCAAAAATCATTGGAAATGTAAACATTGAAAAATATCACATAACTCAAAAATTTGCCGGTAAAGAAATTAAAAAAGGAAACGTGAAACCTGATGAATAGTTATTTCAATAACATATATCACAATTAAATCACAATTAAAAAAATCATTTATCTTGATCGCTTCCAACTGAGCTATGTTTTCCAACAATTCCCTTATCCACTTCATTCCTCATTCTCTGTTCTGCTTCAAACTCTTTTATACAGCGAGCTCTCATTTCAATGTAGTCGTACACCTAGACAGAAAAATTGAAATTATTATCATCGTTCTTTGTTTCTAAATATTACCTGACTCTCCTTCACTTTCGCAATCGCCGCTAAATTCACCACTAGTTGTCTGCTAACTTGATTGGATTTTTGCAACAAAAATTCAAGAATTAGCATCTGTTGAGGGAGATCGTCAAGAGTGAGGATTCCACGTAGGTACTTTGCTATGCACGTTTCTCTTGCTAAMTTCATGTAGGAATTAATCTAAAATTTAGAAAAATACGGTAACCCTATTTTGATAAACGAGCCACTCACAATCGGTGCGCTTTCCATGAATGGTTGATTTATGAAAAGACGCTTCATTATTTTATCTTGGAACGTCTCCATTTCTAAAGCTTTTACGGATTGTTTTCCAGTTGGGAGGTCGTCTCCGGGATTTTTGGATAGTGTAGTTTCTGATAGAATCTTTTCTTTCCCTTCAGATTCCACATTTTTTTCTTCTTTCTCATTTATGGTTCTGGAATGCACAAAATTCACATTTCCATGAATCGCAATCAACTTTTCTCTCATAGAAATATAGTTGTGCACCTATAACAACTTGCATTGTTAACGCAAGAACAAATTTAGTACCTCTCGTCGCTTCACCTTCAGTTTGTTTGATATTTTTGCCACATTCTTCATGCTGGGTCTGCATTTTCTTGCAAACATTGTTCAATAACTTGCATTTTCTTAGGCATGTTAAATACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>307 262 127 90 85 58 47 23 1</canonical_bands>
                <polymorphic_bands>307 262 127 108 90 58 47 1</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>262 127 98 90 77 67 58 56 53 47 16 12 11 11 8 6 1</canonical_bands>
                <polymorphic_bands>262 127 98 90 89 67 58 56 53 47 16 11 11 8 6 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACCACTAGTTGTCTGCTAACTT</pcr_primer_p1>
		<pcr_primer_p2>TAATGAAGCGTCTTTTCATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CACCACTAGTTGTCTGCTAACTTGATTGGATTTTTGCAACAAAAATTCAAGAATTAGCATCTGTTGAGGGAGATCGTCAAGAGTGAGGATTCCACGTAGGTACTTTGCTATGCACGTTTCTCTTGCTAAATTCATGTAGGAATTAATCTAAAATTTAGAAAAATACGGTAACCCTATTTTGATAAACGAGCCACTCACAATCGGTGCGCTTTCCATGAATGGTTGATTTATGAAAAGACGCTTCATTA</canonical_amplicon>
		<polymorphic_amplicon>CACCACTAGTTGTCTGCTAACTTGATTGGATTTTTGCAACAAAAATTCAAGAATTAGCATCTGTTGAGGGAGATCGTCAAGAGTGAGGATTCCACGTAGGTACTTTGCTATGCACGTTTCTCTTGCTAAMTTCATGTAGGAATTAATCTAAAATTTAGAAAAATACGGTAACCCTATTTTGATAAACGAGCCACTCACAATCGGTGCGCTTTCCATGAATGGTTGATTTATGAAAAGACGCTTCATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15549</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>717974</contig_pos>
        <strand></strand>
        <context>TCTAAAATTT[A/T]GAAAAATACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTATGCACGTTTCTCTTGCTAAATTCATGTAGGAATTAATCTAAAATTT</left_flank>
        <right_flank>GAAAAATACGGTAACCCTATTTTGATAAACGAGCCACTCACAATCGGTGC</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTAAACATTGAAAAATATCACATAACTCAAAAATTTGCCGGTAAAGAAATTAAAAAAGGAAACGTGAAACCTGATGAATAGTTATTTCAATAACATATATCACAATTAAATCACAATTAAAAAAATCATTTATCTTGATCGCTTCCAACTGAGCTATGTTTTCCAACAATTCCCTTATCCACTTCATTCCTCATTCTCTGTTCTGCTTCAAACTCTTTTATACAGCGAGCTCTCATTTCAATGTAGTCGTACACCTAGACAGAAAAATTGAAATTATTATCATCGTTCTTTGTTTCTAAATATTACCTGACTCTCCTTCACTTTCGCAATCGCCGCTAAATTCACCACTAGTTGTCTGCTAACTTGATTGGATTTTTGCAACAAAAATTCAAGAATTAGCATCTGTTGAGGGAGATCGTCAAGAGTGAGGATTCCACGTAGGTACTTTGCTATGCACGTTTCTCTTGCTAAATTCATGTAGGAATTAATCTAAAATTTAGAAAAATACGGTAACCCTATTTTGATAAACGAGCCACTCACAATCGGTGCGCTTTCCATGAATGGTTGATTTATGAAAAGACGCTTCATTATTTTATCTTGGAACGTCTCCATTTCTAAAGCTTTTACGGATTGTTTTCCAGTTGGGAGGTCGTCTCCGGGATTTTTGGATAGTGTAGTTTCTGATAGAATCTTTTCTTTCCCTTCAGATTCCACATTTTTTTCTTCTTTCTCATTTATGGTTCTGGAATGCACAAAATTCACATTTCCATGAATCGCAATCAACTTTTCTCTCATAGAAATATAGTTGTGCACCTATAACAACTTGCATTGTTAACGCAAGAACAAATTTAGTACCTCTCGTCGCTTCACCTTCAGTTTGTTTGATATTTTTGCCACATTCTTCATGCTGGGTCTGCATTTTCTTGCAAACATTGTTCAATAACTTGCATTTTCTTAGGCATGTTAAATACATTACCACCACGTAGGTAGCGGATCAAA</canonical>
            <polymorphic>TGTAAACATTGAAAAATATCACATAACTCAAAAATTTGCCGGTAAAGAAATTAAAAAAGGAAACGTGAAACCTGATGAATAGTTATTTCAATAACATATATCACAATTAAATCACAATTAAAAAAATCATTTATCTTGATCGCTTCCAACTGAGCTATGTTTTCCAACAATTCCCTTATCCACTTCATTCCTCATTCTCTGTTCTGCTTCAAACTCTTTTATACAGCGAGCTCTCATTTCAATGTAGTCGTACACCTAGACAGAAAAATTGAAATTATTATCATCGTTCTTTGTTTCTAAATATTACCTGACTCTCCTTCACTTTCGCAATCGCCGCTAAATTCACCACTAGTTGTCTGCTAACTTGATTGGATTTTTGCAACAAAAATTCAAGAATTAGCATCTGTTGAGGGAGATCGTCAAGAGTGAGGATTCCACGTAGGTACTTTGCTATGCACGTTTCTCTTGCTAAATTCATGTAGGAATTAATCTAAAATTTWGAAAAATACGGTAACCCTATTTTGATAAACGAGCCACTCACAATCGGTGCGCTTTCCATGAATGGTTGATTTATGAAAAGACGCTTCATTATTTTATCTTGGAACGTCTCCATTTCTAAAGCTTTTACGGATTGTTTTCCAGTTGGGAGGTCGTCTCCGGGATTTTTGGATAGTGTAGTTTCTGATAGAATCTTTTCTTTCCCTTCAGATTCCACATTTTTTTCTTCTTTCTCATTTATGGTTCTGGAATGCACAAAATTCACATTTCCATGAATCGCAATCAACTTTTCTCTCATAGAAATATAGTTGTGCACCTATAACAACTTGCATTGTTAACGCAAGAACAAATTTAGTACCTCTCGTCGCTTCACCTTCAGTTTGTTTGATATTTTTGCCACATTCTTCATGCTGGGTCTGCATTTTCTTGCAAACATTGTTCAATAACTTGCATTTTCTTAGGCATGTTAAATACATTACCACCACGTAGGTAGCGGATCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCACTAGTTGTCTGCTAACTT</pcr_primer_p1>
		<pcr_primer_p2>TAATGAAGCGTCTTTTCATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CACCACTAGTTGTCTGCTAACTTGATTGGATTTTTGCAACAAAAATTCAAGAATTAGCATCTGTTGAGGGAGATCGTCAAGAGTGAGGATTCCACGTAGGTACTTTGCTATGCACGTTTCTCTTGCTAAATTCATGTAGGAATTAATCTAAAATTTAGAAAAATACGGTAACCCTATTTTGATAAACGAGCCACTCACAATCGGTGCGCTTTCCATGAATGGTTGATTTATGAAAAGACGCTTCATTA</canonical_amplicon>
		<polymorphic_amplicon>CACCACTAGTTGTCTGCTAACTTGATTGGATTTTTGCAACAAAAATTCAAGAATTAGCATCTGTTGAGGGAGATCGTCAAGAGTGAGGATTCCACGTAGGTACTTTGCTATGCACGTTTCTCTTGCTAAATTCATGTAGGAATTAATCTAAAATTTWGAAAAATACGGTAACCCTATTTTGATAAACGAGCCACTCACAATCGGTGCGCTTTCCATGAATGGTTGATTTATGAAAAGACGCTTCATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15550</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>719518</contig_pos>
        <strand></strand>
        <context>TAATCAGGGT[T/A]ACTTACTACA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GTAAACCAAATATCACTGATAACTTATCGGATGTTAGTTTTAATCAGGGT</left_flank>
        <right_flank>ACTTACTACAGGAAACGTTGGATGACTCTGTGAATTTGCTGCAGATTCAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCATAACTCCATGTTGCCATACTAGCGAGAACGCGAACGTTCTTCCACGGGGCGGCACACTCCTCGTTTCATAGCCGTCTTAGCGGCAGTAGACGACAGGCGCCGTTTGGTGTAGAGGTGAACGCGCTGGTCTATCGGTCGCGCATCGCGGGTTCGATTCCCATGTGTCCGTTTTCGTTTTTTTTTGTTTTCATGCGGCGACATCATGGAATGACAGAATATCGACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTTAAAAATATTAATGCTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATGCATGATCTCGCTCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTTAAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAGGTTTTCATGTAAACCAAATATCACTGATAACTTATCGGATGTTAGTTTTAATCAGGGTTACTTACTACAGGAAACGTTGGATGACTCTGTGAATTTGCTGCAGATTCATTGTCGAGTTGAAGCGTTGTTGAAGATAATGTTGGTGATGGAATAGCAGATGATACAGTTGGAACTCTTTCCGCTACAGTGTTACAAGCAGTGTTCTGGAATTTTCAAAAGTTTCAGATTGCATAAACTTTTGCGACAAGGAACCCACTGAAAAAGCGAGATGATGACTCTTGTCAGAAGTTTCTGATATTCCAAATCGAGTGACATCCGAGAAAGAAGTATTTTGTGGAGTTTCACTTTGCTGTATTGGAGAAAATATTTCAGAAATCGAGGGAAGATTCTGCTGTGCAATCTGGAATTAATGGGAATAAAATTTTTCTGGAATTTTGTTGAAATAACAGAATAATATTTGTCCAAACAAACAAAATTCAGATAAGCAAAAAACCTAACCTAGATTCGAATAGTAAAGAGCAAATTTGGTCCATACTCTCTATCCTATTCAGTTGCCTAA</canonical>
            <polymorphic>ACCATAACTCCATGTTGCCATACTAGCGAGAACGCGAACGTTCTTCCACGGGGCGGCACACTCCTCGTTTCATAGCCGTCTTAGCGGCAGTAGACGACAGGCGCCGTTTGGTGTAGAGGTGAACGCGCTGGTCTATCGGTCGCGCATCGCGGGTTCGATTCCCATGTGTCCGTTTTCGTTTTTTTTTGTTTTCATGCGGCGACATCATGGAATGACAGAATATCGACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTTAAAAATATTAATGCTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATGCATGATCTCGCTCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTTAAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAGGTTTTCATGTAAACCAAATATCACTGATAACTTATCGGATGTTAGTTTTAATCAGGGTWACTTACTACAGGAAACGTTGGATGACTCTGTGAATTTGCTGCAGATTCATTGTCGAGTTGAAGCGTTGTTGAAGATAATGTTGGTGATGGAATAGCAGATGATACAGTTGGAACTCTTTCCGCTACAGTGTTACAAGCAGTGTTCTGGAATTTTCAAAAGTTTCAGATTGCATAAACTTTTGCGACAAGGAACCCACTGAAAAAGCGAGATGATGACTCTTGTCAGAAGTTTCTGATATTCCAAATCGAGTGACATCCGAGAAAGAAGTATTTTGTGGAGTTTCACTTTGCTGTATTGGAGAAAATATTTCAGAAATCGAGGGAAGATTCTGCTGTGCAATCTGGAATTAATGGGAATAAAATTTTTCTGGAATTTTGTTGAAATAACAGAATAATATTTGTCCAAACAAACAAAATTCAGATAAGCAAAAAACCTAACCTAGATTCGAATAGTAAAGAGCAAATTTGGTCCATACTCTCTATCCTATTCAGTTGCCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCTGTTCTTTCAGGTTTTCAT</pcr_primer_p1>
		<pcr_primer_p2>GTTTATGCAATCTGAAACTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATCTGTTCTTTCAGGTTTTCATGTAAACCAAATATCACTGATAACTTATCGGATGTTAGTTTTAATCAGGGTTACTTACTACAGGAAACGTTGGATGACTCTGTGAATTTGCTGCAGATTCATTGTCGAGTTGAAGCGTTGTTGAAGATAATGTTGGTGATGGAATAGCAGATGATACAGTTGGAACTCTTTCCGCTACAGTGTTACAAGCAGTGTTCTGGAATTTTCAAAAGTTTCAGATTGCATAAAC</canonical_amplicon>
		<polymorphic_amplicon>AATCTGTTCTTTCAGGTTTTCATGTAAACCAAATATCACTGATAACTTATCGGATGTTAGTTTTAATCAGGGTWACTTACTACAGGAAACGTTGGATGACTCTGTGAATTTGCTGCAGATTCATTGTCGAGTTGAAGCGTTGTTGAAGATAATGTTGGTGATGGAATAGCAGATGATACAGTTGGAACTCTTTCCGCTACAGTGTTACAAGCAGTGTTCTGGAATTTTCAAAAGTTTCAGATTGCATAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15551</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>762003</contig_pos>
        <strand>+</strand>
        <context>GCGGTTGAAA[C/T]CTTTCTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATGGCTCAACACATTGCTCCTCCTCTATGAAATTAATTGGCGGTTGAAA</left_flank>
        <right_flank>CTTTCTTTTTCAAAAATCATTATCGGCAACAGACGATCAATATTTTGGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGTCTCATTTTTCATAAGACGCATCAAGAATCTGTCCACTGATAAAATGTTTGAAATATCATCACCAAAATTTTATCAGTTGACCCAGTTTTGACATCTTTGATATAAATTGAGATAGTTGAGCTCAAAGTGAGAGTATAGAGTTTTCTATGAGAATGTTTGACGGTATTTTTAATTCAGTCAAAGTTGTTTCCTTATCATCATGCGTCTTCAGGTAATTCGCGATGGACTTGTCTCCGGTTCTTACTCCCACTGGGAAGTCTCGCTTGGACTGCAGAATGTCTATGTCCAACCAGGTATTGGAAAGGATAATCGTGATGAGAACAAGGACGTCAAGGAGAACAAGGAGGAGTGAAAGAGCACCTAGTATTCAAGTCTGTTCATTTTCTTTATCACGGGTGGCGCGAAGCGGGAACCAATAATTTATCAAATTTATTGACTTCTTGTTATGGCTCAACACATTGCTCCTCCTCTATGAAATTAATTGGCGGTTGAAACCTTTCTTTTTCAAAAATCATTATCGGCAACAGACGATCAATATTTTGGGCTTGGATCAGTCTCACTTTTGAATACATTGTCTAATGTTATTTAAATGTTTTTCTGGTTTTCTTTCATCGTGTATTCAATTATCCTCCGTCTTTGGGACTTTTCTGAAGCGAAGATTGCCGTCTGATTGTAATAAATTTTCAAAATGACTTACTTATTTTTATCTTACGTTTTATTCGTGGTTTTCAACCAATTTCAATATATCTCTATTTTCATTTTCCTCGAACCACCAGAAAATGCAGTGTTTTTTGAGATTCAACATGGTCAAATTTTCGTCCCCATCCGAAGAACTTCAAAACATGATTCGGACCCATCACTCGCGACCACATGACCGTTTTCCCTGTGCGATACGAGTCAAAGGCTCACATGGAGCAGGAGAAACGATACCTCTTGCCAGTGGCTATATTGTAAAGTTCAGGGATCAGGTAACACTGAAATTTTTGAAATCAATT</canonical>
            <polymorphic>AGTGTCTCATTTTTCATAAGACGCATCAAGAATCTGTCCACTGATAAAATGTTTGAAATATCATCACCAAAATTTTATCAGTTGACCCAGTTTTGACATCTTTGATATAAATTGAGATAGTTGAGCTCAAAGTGAGAGTATAGAGTTTTCTATGAGAATGTTTGACGGTATTTTTAATTCAGTCAAAGTTGTTTCCTTATCATCATGCGTCTTCAGGTAATTCGCGATGGACTTGTCTCCGGTTCTTACTCCCACTGGGAAGTCTCGCTTGGACTGCAGAATGTCTATGTCCAACCAGGTATTGGAAAGGATAATCGTGATGAGAACAAGGACGTCAAGGAGAACAAGGAGGAGTGAAAGAGCACCTAGTATTCAAGTCTGTTCATTTTCTTTATCACGGGTGGCGCGAAGCGGGAACCAATAATTTATCAAATTTATTGACTTCTTGTTATGGCTCAACACATTGCTCCTCCTCTATGAAATTAATTGGCGGTTGAAAYCTTTCTTTTTCAAAAATCATTATCGGCAACAGACGATCAATATTTTGGGCTTGGATCAGTCTCACTTTTGAATACATTGTCTAATGTTATTTAAATGTTTTTCTGGTTTTCTTTCATCGTGTATTCAATTATCCTCCGTCTTTGGGACTTTTCTGAAGCGAAGATTGCCGTCTGATTGTAATAAATTTTCAAAATGACTTACTTATTTTTATCTTACGTTTTATTCGTGGTTTTCAACCAATTTCAATATATCTCTATTTTCATTTTCCTCGAACCACCAGAAAATGCAGTGTTTTTTGAGATTCAACATGGTCAAATTTTCGTCCCCATCCGAAGAACTTCAAAACATGATTCGGACCCATCACTCGCGACCACATGACCGTTTTCCCTGTGCGATACGAGTCAAAGGCTCACATGGAGCAGGAGAAACGATACCTCTTGCCAGTGGCTATATTGTAAAGTTCAGGGATCAGGTAACACTGAAATTTTTGAAATCAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCACCTAGTATTCAAGTCTGTTC</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAAACCAGAAAAACATTTA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GCACCTAGTATTCAAGTCTGTTCATTTTCTTTATCACGGGTGGCGCGAAGCGGGAACCAATAATTTATCAAATTTATTGACTTCTTGTTATGGCTCAACACATTGCTCCTCCTCTATGAAATTAATTGGCGGTTGAAACCTTTCTTTTTCAAAAATCATTATCGGCAACAGACGATCAATATTTTGGGCTTGGATCAGTCTCACTTTTGAATACATTGTCTAATGTTATTTAAATGTTTTTCTGGTTTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>GCACCTAGTATTCAAGTCTGTTCATTTTCTTTATCACGGGTGGCGCGAAGCGGGAACCAATAATTTATCAAATTTATTGACTTCTTGTTATGGCTCAACACATTGCTCCTCCTCTATGAAATTAATTGGCGGTTGAAAYCTTTCTTTTTCAAAAATCATTATCGGCAACAGACGATCAATATTTTGGGCTTGGATCAGTCTCACTTTTGAATACATTGTCTAATGTTATTTAAATGTTTTTCTGGTTTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15552</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>772170</contig_pos>
        <strand>+</strand>
        <context>AGGACCCGGT[A/G]AGTCCCTCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGGAGATGGACATCCTCCAGAACTACGTGCTCAGCTACAAGGACCCGGT</left_flank>
        <right_flank>AGTCCCTCAATTTTTTGAGTTTTCTGGATAGTGGATAGAAATGTGGGTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATACAACGATTCTCATTTGACAGCTCCTCACATTTCGGACTCTGATTTCGACTTCCTAATAAAGATTTTTGTATAATTTTCAATGTTTGGTCTCTTTTTTTTGTATTTGTGTTGTGAACACTTCTAATACTTTTCTCTAACCTCTTAGAAAGGCTCTTTCTGATTTTCATGGTCCCTTGTAAGACCCTGCAAAAAAAACATGTCTTGATGGAAAGTTTTTGAAATCCGAGAAACATCAACTACATTACTTAATTATCAAATTTTGCTGAACGTTTAGTTATTCGCTGAATTCAATTTTACATGAAAATAATTTTCAAAAATTTTTTTTCGTGGGACCGCAAAAAATCATGGAGAGCCCAATTTCAAAATTTTTCAAAAAAAATTTCCGCTAACTTTTCAGAAATGAAGTATATTCTGAACTTAAAAGCCGATTTCTGTGATCCTCGCGAGGAGATGGACATCCTCCAGAACTACGTGCTCAGCTACAAGGACCCGGTAAGTCCCTCAATTTTTTGAGTTTTCTGGATAGTGGATAGAAATGTGGGTTTTTGGATGGCCCAGTTTTTCTTCTGGCTCTGGAATCCTTCTCCGGAACATTTAAATTTGAAAAAATAGGATTTTTGTTAAGTTTTGACATTTAAGACAAATTTTGAGATAGACCCGACAGCCACTATTCCACACAATTTCGAAAAATGTTTTCAAATTTCGAAATTCATTTTCAGACGGACGTCTTTGCTCCGTTGGTTGGCTTCTTCATCGGAACTTTTCTGAAATTCTGCTTCTTCGAGCGCGATTCGTTACATTACCAAGGCCTCCTTTATTATTGTGTATATGTCCTGACACTTGCCATTCTTCGGCTCTTTTTTGTTATTTATTGTTAATTTTCTCATAAATGAAAGAACTTCGATTTTTTCCTGATTTCTCACTGATTTTTTCCTGGTTCATGGTCATATCCATTTGATATCAAGTTTATTATTCAAAGTTTTTATAGCTGGAAA</canonical>
            <polymorphic>GTATACAACGATTCTCATTTGACAGCTCCTCACATTTCGGACTCTGATTTCGACTTCCTAATAAAGATTTTTGTATAATTTTCAATGTTTGGTCTCTTTTTTTTGTATTTGTGTTGTGAACACTTCTAATACTTTTCTCTAACCTCTTAGAAAGGCTCTTTCTGATTTTCATGGTCCCTTGTAAGACCCTGCAAAAAAAACATGTCTTGATGGAAAGTTTTTGAAATCCGAGAAACATCAACTACATTACTTAATTATCAAATTTTGCTGAACGTTTAGTTATTCGCTGAATTCAATTTTACATGAAAATAATTTTCAAAAATTTTTTTTCGTGGGACCGCAAAAAATCATGGAGAGCCCAATTTCAAAATTTTTCAAAAAAAATTTCCGCTAACTTTTCAGAAATGAAGTATATTCTGAACTTAAAAGCCGATTTCTGTGATCCTCGCGAGGAGATGGACATCCTCCAGAACTACGTGCTCAGCTACAAGGACCCGGTRAGTCCCTCAATTTTTTGAGTTTTCTGGATAGTGGATAGAAATGTGGGTTTTTGGATGGCCCAGTTTTTCTTCTGGCTCTGGAATCCTTCTCCGGAACATTTAAATTTGAAAAAATAGGATTTTTGTTAAGTTTTGACATTTAAGACAAATTTTGAGATAGACCCGACAGCCACTATTCCACACAATTTCGAAAAATGTTTTCAAATTTCGAAATTCATTTTCAGACGGACGTCTTTGCTCCGTTGGTTGGCTTCTTCATCGGAACTTTTCTGAAATTCTGCTTCTTCGAGCGCGATTCGTTACATTACCAAGGCCTCCTTTATTATTGTGTATATGTCCTGACACTTGCCATTCTTCGGCTCTTTTTTGTTATTTATTGTTAATTTTCTCATAAATGAAAGAACTTCGATTTTTTCCTGATTTCTCACTGATTTTTTCCTGGTTCATGGTCATATCCATTTGATATCAAGTTTATTATTCAAAGTTTTTATAGCTGGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAACTTAAAAGCCGATTTC</pcr_primer_p1>
		<pcr_primer_p2>GGGTCTATCTCAAAATTTGTCTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTGAACTTAAAAGCCGATTTCTGTGATCCTCGCGAGGAGATGGACATCCTCCAGAACTACGTGCTCAGCTACAAGGACCCGGTAAGTCCCTCAATTTTTTGAGTTTTCTGGATAGTGGATAGAAATGTGGGTTTTTGGATGGCCCAGTTTTTCTTCTGGCTCTGGAATCCTTCTCCGGAACATTTAAATTTGAAAAAATAGGATTTTTGTTAAGTTTTGACATTTAAGACAAATTTTGAGATAGACCC</canonical_amplicon>
		<polymorphic_amplicon>CTGAACTTAAAAGCCGATTTCTGTGATCCTCGCGAGGAGATGGACATCCTCCAGAACTACGTGCTCAGCTACAAGGACCCGGTRAGTCCCTCAATTTTTTGAGTTTTCTGGATAGTGGATAGAAATGTGGGTTTTTGGATGGCCCAGTTTTTCTTCTGGCTCTGGAATCCTTCTCCGGAACATTTAAATTTGAAAAAATAGGATTTTTGTTAAGTTTTGACATTTAAGACAAATTTTGAGATAGACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15553</snp_id>
        <super_contig>c008800974.Contig1</super_contig>
        <contig_pos>17882</contig_pos>
        <strand>+</strand>
        <context>TCGGAATCTT[C/T]GGAAAAATCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGAACTTGAGAGATTGCTAGGTACAAATTTAGGAATCTTCGGAATCTT</left_flank>
        <right_flank>GGAAAAATCGAAAAATTGAAAAAAAAAATTATTTGACTACTAAAATTATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGAAATTGTTTTTAAAAGGGATTTTGGCTCAAAATTTCAAATTCTAAAGTTCTTAAATCTCAAAATATCAATCAGAAATATTCGAGTCATATGACATTTGTGACGAAAAGATAAAAAGTACAAATTCTCATATCACATACAAAATCAGTGAGCCTATTGATAAGAATTCTTTTGCTCACCGACTTCTGATTTTCTTATTTTTCTAATTTTCATGCATATGCATACATATTTTTAGGGGCTAAAAAGGGACCGAAGAAGGCGAAAATGAATTGGAAAGTAATTGGTTTTTGCTGTGTTTCCCAAGGAAAAGAGAGAATAAGAAAAAGTGGGCGGAGCCTAATTTTCTGGAGGGGAGAAGGGGAAATCTGATAACAGAGAAGGGGAAAGAAAATGAGATTTTAGGAAGGAGATTAGAATTTTCTGGAATTTTCCGGAGAAAATAATGAAATTGAACTTGAGAGATTGCTAGGTACAAATTTAGGAATCTTCGGAATCTTCGGAAAAATCGAAAAATTGAAAAAAAAAATTATTTGACTACTAAAATTATGGAACAGGTGAAAAAAAACTGAAAATTTGGGTGGCTTTCTACCAGTATCTTTTTCCTAAAATGACGTTTTTTTGCATTCACTGTAAGAGACGCAGAGAAACCAGACACGCTAACTTGTCTGCGTCTCCTCTCCCCCTCTTTCTCTCAACGTCGACAGGACTATGCCAACTTCAAACGGTTATATCTCGGCTGGCAAAAAAGCTATCAAAAAGTTAAAAACTACAAAAATGTGTAAAATTAAATTTTACATATTTTTGTTGTTAAAAACTTTTTTGTAGCTTCTTTGATTTTCGAGATATGAGTGTTTGAAGTTGTAGAGGGCACAGAGAGGTGAGAGAGAGAGAGTTTTTATTGATGAGAGAGTGCAGAGAAAGAGGGTTTTTCACTAAAAAATTGTTGAAATACAGATCTGAAACAACATAAAAAAATTTATTTTTTCAAGTTTTCCAAA</canonical>
            <polymorphic>TCAGAAATTGTTTTTAAAAGGGATTTTGGCTCAAAATTTCAAATTCTAAAGTTCTTAAATCTCAAAATATCAATCAGAAATATTCGAGTCATATGACATTTGTGACGAAAAGATAAAAAGTACAAATTCTCATATCACATACAAAATCAGTGAGCCTATTGATAAGAATTCTTTTGCTCACCGACTTCTGATTTTCTTATTTTTCTAATTTTCATGCATATGCATACATATTTTTAGGGGCTAAAAAGGGACCGAAGAAGGCGAAAATGAATTGGAAAGTAATTGGTTTTTGCTGTGTTTCCCAAGGAAAAGAGAGAATAAGAAAAAGTGGGCGGAGCCTAATTTTCTGGAGGGGAGAAGGGGAAATCTGATAACAGAGAAGGGGAAAGAAAATGAGATTTTAGGAAGGAGATTAGAATTTTCTGGAATTTTCCGGAGAAAATAATGAAATTGAACTTGAGAGATTGCTAGGTACAAATTTAGGAATCTTCGGAATCTTYGGAAAAATCGAAAAATTGAAAAAAAAAATTATTTGACTACTAAAATTATGGAACAGGTGAAAAAAAACTGAAAATTTGGGTGGCTTTCTACCAGTATCTTTTTCCTAAAATGACGTTTTTTTGCATTCACTGTAAGAGACGCAGAGAAACCAGACACGCTAACTTGTCTGCGTCTCCTCTCCCCCTCTTTCTCTCAACGTCGACAGGACTATGCCAACTTCAAACGGTTATATCTCGGCTGGCAAAAAAGCTATCAAAAAGTTAAAAACTACAAAAATGTGTAAAATTAAATTTTACATATTTTTGTTGTTAAAAACTTTTTTGTAGCTTCTTTGATTTTCGAGATATGAGTGTTTGAAGTTGTAGAGGGCACAGAGAGGTGAGAGAGAGAGAGTTTTTATTGATGAGAGAGTGCAGAGAAAGAGGGTTTTTCACTAAAAAATTGTTGAAATACAGATCTGAAACAACATAAAAAAATTTATTTTTTCAAGTTTTCCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>459 180 123 113 73 40 9 3</canonical_bands>
                <polymorphic_bands>468 180 123 113 73 40 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAGAGAATAAGAAAAAGTGG</pcr_primer_p1>
		<pcr_primer_p2>CCTGTTCCATAATTTTAGTAGTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAGAGAATAAGAAAAAGTGGGCGGAGCCTAATTTTCTGGAGGGGAGAAGGGGAAATCTGATAACAGAGAAGGGGAAAGAAAATGAGATTTTAGGAAGGAGATTAGAATTTTCTGGAATTTTCCGGAGAAAATAATGAAATTGAACTTGAGAGATTGCTAGGTACAAATTTAGGAATCTTCGGAATCTTCGGAAAAATCGAAAAATTGAAAAAAAAAATTATTTGACTACTAAAATTATGGAACAGG</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAGAGAATAAGAAAAAGTGGGCGGAGCCTAATTTTCTGGAGGGGAGAAGGGGAAATCTGATAACAGAGAAGGGGAAAGAAAATGAGATTTTAGGAAGGAGATTAGAATTTTCTGGAATTTTCCGGAGAAAATAATGAAATTGAACTTGAGAGATTGCTAGGTACAAATTTAGGAATCTTCGGAATCTTYGGAAAAATCGAAAAATTGAAAAAAAAAATTATTTGACTACTAAAATTATGGAACAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15554</snp_id>
        <super_contig>c008800974.Contig1</super_contig>
        <contig_pos>17988</contig_pos>
        <strand></strand>
        <context>ATCTTTTTCC[T/C]AAAATGACGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGTGAAAAAAAACTGAAAATTTGGGTGGCTTTCTACCAGTATCTTTTTCC</left_flank>
        <right_flank>AAAATGACGTTTTTTTGCATTCACTGTAAGAGACGCAGAGAAACCAGACA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAGATAAAAAGTACAAATTCTCATATCACATACAAAATCAGTGAGCCTATTGATAAGAATTCTTTTGCTCACCGACTTCTGATTTTCTTATTTTTCTAATTTTCATGCATATGCATACATATTTTTAGGGGCTAAAAAGGGACCGAAGAAGGCGAAAATGAATTGGAAAGTAATTGGTTTTTGCTGTGTTTCCCAAGGAAAAGAGAGAATAAGAAAAAGTGGGCGGAGCCTAATTTTCTGGAGGGGAGAAGGGGAAATCTGATAACAGAGAAGGGGAAAGAAAATGAGATTTTAGGAAGGAGATTAGAATTTTCTGGAATTTTCCGGAGAAAATAATGAAATTGAACTTGAGAGATTGCTAGGTACAAATTTAGGAATCTTCGGAATCTTCGGAAAAATCGAAAAATTGAAAAAAAAAATTATTTGACTACTAAAATTATGGAACAGGTGAAAAAAAACTGAAAATTTGGGTGGCTTTCTACCAGTATCTTTTTCCTAAAATGACGTTTTTTTGCATTCACTGTAAGAGACGCAGAGAAACCAGACACGCTAACTTGTCTGCGTCTCCTCTCCCCCTCTTTCTCTCAACGTCGACAGGACTATGCCAACTTCAAACGGTTATATCTCGGCTGGCAAAAAAGCTATCAAAAAGTTAAAAACTACAAAAATGTGTAAAATTAAATTTTACATATTTTTGTTGTTAAAAACTTTTTTGTAGCTTCTTTGATTTTCGAGATATGAGTGTTTGAAGTTGTAGAGGGCACAGAGAGGTGAGAGAGAGAGAGTTTTTATTGATGAGAGAGTGCAGAGAAAGAGGGTTTTTCACTAAAAAATTGTTGAAATACAGATCTGAAACAACATAAAAAAATTTATTTTTTCAAGTTTTCCAAAAAAAACTTTTTCGATATCTTTCGAAAACTTTGAAATTGTAAATTTAAAAATTGTAGAATTGTGGAATTTTAGAATTTTAGAATTTTTCGAAAATTTCAATTTCTTC</canonical>
            <polymorphic>GAAAAGATAAAAAGTACAAATTCTCATATCACATACAAAATCAGTGAGCCTATTGATAAGAATTCTTTTGCTCACCGACTTCTGATTTTCTTATTTTTCTAATTTTCATGCATATGCATACATATTTTTAGGGGCTAAAAAGGGACCGAAGAAGGCGAAAATGAATTGGAAAGTAATTGGTTTTTGCTGTGTTTCCCAAGGAAAAGAGAGAATAAGAAAAAGTGGGCGGAGCCTAATTTTCTGGAGGGGAGAAGGGGAAATCTGATAACAGAGAAGGGGAAAGAAAATGAGATTTTAGGAAGGAGATTAGAATTTTCTGGAATTTTCCGGAGAAAATAATGAAATTGAACTTGAGAGATTGCTAGGTACAAATTTAGGAATCTTCGGAATCTTCGGAAAAATCGAAAAATTGAAAAAAAAAATTATTTGACTACTAAAATTATGGAACAGGTGAAAAAAAACTGAAAATTTGGGTGGCTTTCTACCAGTATCTTTTTCCYAAAATGACGTTTTTTTGCATTCACTGTAAGAGACGCAGAGAAACCAGACACGCTAACTTGTCTGCGTCTCCTCTCCCCCTCTTTCTCTCAACGTCGACAGGACTATGCCAACTTCAAACGGTTATATCTCGGCTGGCAAAAAAGCTATCAAAAAGTTAAAAACTACAAAAATGTGTAAAATTAAATTTTACATATTTTTGTTGTTAAAAACTTTTTTGTAGCTTCTTTGATTTTCGAGATATGAGTGTTTGAAGTTGTAGAGGGCACAGAGAGGTGAGAGAGAGAGAGTTTTTATTGATGAGAGAGTGCAGAGAAAGAGGGTTTTTCACTAAAAAATTGTTGAAATACAGATCTGAAACAACATAAAAAAATTTATTTTTTCAAGTTTTCCAAAAAAAACTTTTTCGATATCTTTCGAAAACTTTGAAATTGTAAATTTAAAAATTGTAGAATTGTGGAATTTTAGAATTTTAGAATTTTTCGAAAATTTCAATTTCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACTACTAAAATTATGGAACAGG</pcr_primer_p1>
		<pcr_primer_p2>AATAAAAACTCTCTCTCTCTCACC</pcr_primer_p2>
		<pcr_amplicon_size>369</pcr_amplicon_size>
		<canonical_amplicon>TGACTACTAAAATTATGGAACAGGTGAAAAAAAACTGAAAATTTGGGTGGCTTTCTACCAGTATCTTTTTCCTAAAATGACGTTTTTTTGCATTCACTGTAAGAGACGCAGAGAAACCAGACACGCTAACTTGTCTGCGTCTCCTCTCCCCCTCTTTCTCTCAACGTCGACAGGACTATGCCAACTTCAAACGGTTATATCTCGGCTGGCAAAAAAGCTATCAAAAAGTTAAAAACTACAAAAATGTGTAAAATTAAATTTTACATATTTTTGTTGTTAAAAACTTTTTTGTAGCTTCTTTGATTTTCGAGATATGAGTGTTTGAAGTTGTAGAGGGCACAGAGAGGTGAGAGAGAGAGAGTTTTTATT</canonical_amplicon>
		<polymorphic_amplicon>TGACTACTAAAATTATGGAACAGGTGAAAAAAAACTGAAAATTTGGGTGGCTTTCTACCAGTATCTTTTTCCYAAAATGACGTTTTTTTGCATTCACTGTAAGAGACGCAGAGAAACCAGACACGCTAACTTGTCTGCGTCTCCTCTCCCCCTCTTTCTCTCAACGTCGACAGGACTATGCCAACTTCAAACGGTTATATCTCGGCTGGCAAAAAAGCTATCAAAAAGTTAAAAACTACAAAAATGTGTAAAATTAAATTTTACATATTTTTGTTGTTAAAAACTTTTTTGTAGCTTCTTTGATTTTCGAGATATGAGTGTTTGAAGTTGTAGAGGGCACAGAGAGGTGAGAGAGAGAGAGTTTTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15556</snp_id>
        <super_contig>c008800974.Contig1</super_contig>
        <contig_pos>19379</contig_pos>
        <strand>+</strand>
        <context>AATAACTAAA[C/T]TGAATATATA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATGGCTTTCTAGACCCCTAGAGATCTCAGCCCATAGAAATAACTAAA</left_flank>
        <right_flank>TGAATATATACATTTTTCGGGTGATTTTTCTAATTTTTTTAAATTTTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCAGAAATTCAAGAAAAAATTCAGAAATTCAAGAAAAAATAGAAAATTGGGGACTTTAAAAATTAGGGAATAAGAAGAAAAAGAAGAGGAAGAATATAATTCAATTTCAAATTCTTCTTTTTGGGTGGTAAGGAAAATAAGGAAAATGAATGAAACAGAAGAAGAAGGCATATTTTTGTGGGGACCAATAGAATAAGAAGAAGAAGAGAAAGAAGAAAGAAATACTAATTATTAGTTGTTGGTGGTGGTGTGTCGTTTCGAGTTATTACTCTCTTACTCTCCTTTTCCTTATTATTATTCATTATTATTAGTTGTGAATTTGTAAAAAGGAAAAGAAGAAGACGAGGAATTTTGAAGAATTTAGGAATTTTAAACAAGATCTAGGGAGCAAAAAAATAGGTCTTGTTTTTTTCTCGATTCCTAGAAACTGAACTTTTTTCATTACAAAAAATGGCTTTCTAGACCCCTAGAGATCTCAGCCCATAGAAATAACTAAATTGAATATATACATTTTTCGGGTGATTTTTCTAATTTTTTTAAATTTTCAAAATCTTCAATTCGTATAACATCTTGTTTCCTTTGTTTTCTTCTCCAAAACGGACTTTAAACCAACTCAAATGATCGATTTTGAGCCGAGTTACGCGCTTTTGGAGTTTGGAGATACGCAGAGAAACAGACACTCTAGCTTCTTTGCGCCCTCCCTCCTTGTCGTGTTGTTTCGCGGCGCCCGTCGGCCCGGCCCGGCCCTGGCCCGGCCCGTCCGGCCCGTCTGCAAACTGTAAAAAATTTCCACTCCGAATTTTCCACATGTATGTTTGGGACTGTAACTCAGCTCAAACTCAACCGATTTGAATGAAAGTTTTTTATTCACATTATCAATTACCCACTTGAGGTTTTAACTGTAAATTCAAATTCGCTAAAAATTATTGTCCACGAGGACTACACGGATGAAATACACTGAAAATAAGTTAAAATAGCTTAGAACACGCTTGAAAACA</canonical>
            <polymorphic>ATTCAGAAATTCAAGAAAAAATTCAGAAATTCAAGAAAAAATAGAAAATTGGGGACTTTAAAAATTAGGGAATAAGAAGAAAAAGAAGAGGAAGAATATAATTCAATTTCAAATTCTTCTTTTTGGGTGGTAAGGAAAATAAGGAAAATGAATGAAACAGAAGAAGAAGGCATATTTTTGTGGGGACCAATAGAATAAGAAGAAGAAGAGAAAGAAGAAAGAAATACTAATTATTAGTTGTTGGTGGTGGTGTGTCGTTTCGAGTTATTACTCTCTTACTCTCCTTTTCCTTATTATTATTCATTATTATTAGTTGTGAATTTGTAAAAAGGAAAAGAAGAAGACGAGGAATTTTGAAGAATTTAGGAATTTTAAACAAGATCTAGGGAGCAAAAAAATAGGTCTTGTTTTTTTCTCGATTCCTAGAAACTGAACTTTTTTCATTACAAAAAATGGCTTTCTAGACCCCTAGAGATCTCAGCCCATAGAAATAACTAAAYTGAATATATACATTTTTCGGGTGATTTTTCTAATTTTTTTAAATTTTCAAAATCTTCAATTCGTATAACATCTTGTTTCCTTTGTTTTCTTCTCCAAAACGGACTTTAAACCAACTCAAATGATCGATTTTGAGCCGAGTTACGCGCTTTTGGAGTTTGGAGATACGCAGAGAAACAGACACTCTAGCTTCTTTGCGCCCTCCCTCCTTGTCGTGTTGTTTCGCGGCGCCCGTCGGCCCGGCCCGGCCCTGGCCCGGCCCGTCCGGCCCGTCTGCAAACTGTAAAAAATTTCCACTCCGAATTTTCCACATGTATGTTTGGGACTGTAACTCAGCTCAAACTCAACCGATTTGAATGAAAGTTTTTTATTCACATTATCAATTACCCACTTGAGGTTTTAACTGTAAATTCAAATTCGCTAAAAATTATTGTCCACGAGGACTACACGGATGAAATACACTGAAAATAAGTTAAAATAGCTTAGAACACGCTTGAAAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>229 130 117 90 80 77 37 34 31 27 19 16 16 13 12 11 10 10 8 8 7 7 6 5</canonical_bands>
                <polymorphic_bands>229 164 117 90 80 77 37 31 27 19 16 16 13 12 11 10 10 8 8 7 7 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATTCCTAGAAACTGAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>CCAAACATACATGTGGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>405</pcr_amplicon_size>
		<canonical_amplicon>CGATTCCTAGAAACTGAACTTTTTTCATTACAAAAAATGGCTTTCTAGACCCCTAGAGATCTCAGCCCATAGAAATAACTAAATTGAATATATACATTTTTCGGGTGATTTTTCTAATTTTTTTAAATTTTCAAAATCTTCAATTCGTATAACATCTTGTTTCCTTTGTTTTCTTCTCCAAAACGGACTTTAAACCAACTCAAATGATCGATTTTGAGCCGAGTTACGCGCTTTTGGAGTTTGGAGATACGCAGAGAAACAGACACTCTAGCTTCTTTGCGCCCTCCCTCCTTGTCGTGTTGTTTCGCGGCGCCCGTCGGCCCGGCCCGGCCCTGGCCCGGCCCGTCCGGCCCGTCTGCAAACTGTAAAAAATTTCCACTCCGAATTTTCCACATGTATGTTTGG</canonical_amplicon>
		<polymorphic_amplicon>CGATTCCTAGAAACTGAACTTTTTTCATTACAAAAAATGGCTTTCTAGACCCCTAGAGATCTCAGCCCATAGAAATAACTAAAYTGAATATATACATTTTTCGGGTGATTTTTCTAATTTTTTTAAATTTTCAAAATCTTCAATTCGTATAACATCTTGTTTCCTTTGTTTTCTTCTCCAAAACGGACTTTAAACCAACTCAAATGATCGATTTTGAGCCGAGTTACGCGCTTTTGGAGTTTGGAGATACGCAGAGAAACAGACACTCTAGCTTCTTTGCGCCCTCCCTCCTTGTCGTGTTGTTTCGCGGCGCCCGTCGGCCCGGCCCGGCCCTGGCCCGGCCCGTCCGGCCCGTCTGCAAACTGTAAAAAATTTCCACTCCGAATTTTCCACATGTATGTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15560</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>7060</contig_pos>
        <strand>+</strand>
        <context>CCCCGATTCC[A/C]ATCAAAGAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATGAAGAGAAATTGGAGCTTCAGAAGCTCGCCGAGCACGCCCCGATTCC</left_flank>
        <right_flank>ATCAAAGAGAATTTAGACGAAGCATCTGCCAAGACCAATGTCCTCCTTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTAGACCGGAATATGGGTTTTTAGGGGATTTGAAGGTGTTTTGAGCATAAAAATGACGATTTTTGTGCCTAAAAATAGCTTTTCGATGTAATTTTTAATTTTGATGTGAATCTACGTGCTTTTCTGCACAAAATGAAGCGAACACCATATCTAAATTAATTTTTTCTAATCATAGTTTTTTTCCAGCGCGCCGATCCACTTCTCGAACAACGTCGTGCCGATCTGATCCACACCGCGTGCGTCCTCCTCGACAAGGCCGGTCTCATCAAATACGACAAACGATCCGGAATCATCCAGGCGACAGAACTCGGACGCATCGCTTCCCACTTCTACTGTACCTATGAATCCATGCAAACCTACAACAAGCTGCTCATCGAGACGTGCTCCGATATCGATCTCTTCCGAATCTTCTCAATGAGCTCTGAATTCAAATTGCTCTCCGTTAGAGATGAAGAGAAATTGGAGCTTCAGAAGCTCGCCGAGCACGCCCCGATTCCCATCAAAGAGAATTTAGACGAAGCATCTGCCAAGACCAATGTCCTCCTTCAAGCCTACATTTCTCAGTTGAAATTGGAAGGATTCGCTCTTCAAGCTGATATGGTCTTCGTTGCTCAATCAGCTGGACGTCTGTTCCGTGCTCTATTCGAGATTGTTCTCTGGAGAGGATGGGCGGGGCTTGCTCAGAAGGTGCTCACGCTGTGTAAGATGGTTACACAGAGACAATGGGGATCGTTGAACCCGCTCCATCAGTTTAAGAAGATTCCTAGTGAAGTGGTTAGATCGATTGATAAGAAGAACTACTCGTTTGATAGGCTGTATGACCTGGATCAACATCAATTGGGAGATCTTATCAAGATGCCAAAGATGGGAAAACCATTGTACAAGTTTATCCGGCAATTCCCAAAACTTGAAATGACCACGCTGATCCAGCCAATCACAAGAACTACAATGAGAATCGAGTTGACTATCACTCCGGACTTCCAATGGGATGATAAGGT</canonical>
            <polymorphic>TTTTAGACCGGAATATGGGTTTTTAGGGGATTTGAAGGTGTTTTGAGCATAAAAATGACGATTTTTGTGCCTAAAAATAGCTTTTCGATGTAATTTTTAATTTTGATGTGAATCTACGTGCTTTTCTGCACAAAATGAAGCGAACACCATATCTAAATTAATTTTTTCTAATCATAGTTTTTTTCCAGCGCGCCGATCCACTTCTCGAACAACGTCGTGCCGATCTGATCCACACCGCGTGCGTCCTCCTCGACAAGGCCGGTCTCATCAAATACGACAAACGATCCGGAATCATCCAGGCGACAGAACTCGGACGCATCGCTTCCCACTTCTACTGTACCTATGAATCCATGCAAACCTACAACAAGCTGCTCATCGAGACGTGCTCCGATATCGATCTCTTCCGAATCTTCTCAATGAGCTCTGAATTCAAATTGCTCTCCGTTAGAGATGAAGAGAAATTGGAGCTTCAGAAGCTCGCCGAGCACGCCCCGATTCCMATCAAAGAGAATTTAGACGAAGCATCTGCCAAGACCAATGTCCTCCTTCAAGCCTACATTTCTCAGTTGAAATTGGAAGGATTCGCTCTTCAAGCTGATATGGTCTTCGTTGCTCAATCAGCTGGACGTCTGTTCCGTGCTCTATTCGAGATTGTTCTCTGGAGAGGATGGGCGGGGCTTGCTCAGAAGGTGCTCACGCTGTGTAAGATGGTTACACAGAGACAATGGGGATCGTTGAACCCGCTCCATCAGTTTAAGAAGATTCCTAGTGAAGTGGTTAGATCGATTGATAAGAAGAACTACTCGTTTGATAGGCTGTATGACCTGGATCAACATCAATTGGGAGATCTTATCAAGATGCCAAAGATGGGAAAACCATTGTACAAGTTTATCCGGCAATTCCCAAAACTTGAAATGACCACGCTGATCCAGCCAATCACAAGAACTACAATGAGAATCGAGTTGACTATCACTCCGGACTTCCAATGGGATGATAAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCCACTTCTACTGTACCTATGA</pcr_primer_p1>
		<pcr_primer_p2>CAATTTCAACTGAGAAATGTAGG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCCCACTTCTACTGTACCTATGAATCCATGCAAACCTACAACAAGCTGCTCATCGAGACGTGCTCCGATATCGATCTCTTCCGAATCTTCTCAATGAGCTCTGAATTCAAATTGCTCTCCGTTAGAGATGAAGAGAAATTGGAGCTTCAGAAGCTCGCCGAGCACGCCCCGATTCCCATCAAAGAGAATTTAGACGAAGCATCTGCCAAGACCAATGTCCTCCTTCAAGCCTACATTTCTCAGTTGAAATTG</canonical_amplicon>
		<polymorphic_amplicon>TCCCACTTCTACTGTACCTATGAATCCATGCAAACCTACAACAAGCTGCTCATCGAGACGTGCTCCGATATCGATCTCTTCCGAATCTTCTCAATGAGCTCTGAATTCAAATTGCTCTCCGTTAGAGATGAAGAGAAATTGGAGCTTCAGAAGCTCGCCGAGCACGCCCCGATTCCMATCAAAGAGAATTTAGACGAAGCATCTGCCAAGACCAATGTCCTCCTTCAAGCCTACATTTCTCAGTTGAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15561</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>9840</contig_pos>
        <strand></strand>
        <context>AAATGTCGAA[C/T]TTCCCATTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAA</left_flank>
        <right_flank>TTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAACTTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAAAATCATTAATTTTCTAGTCAAAGGTTTCTAAATCACCTTTTAAAATCGCCCTCCCTCCCAAACGTCCAAATCTTTTCCAGGTCTTCGTCCCAGTGCGTCGTCAAACCCGTCCAGTCGCCGTCGCTCTTCTCACGATGGCCCTCGCCGACGGAACCCCCAAACGATTCCTGCGCCTCTCCGAACACGACGACACCTTCCAAGCGCTTCTAGCAGACATTGAAGACGAATCCCTCCGTGAAGCCGTCTCCTGTGGTGTCGGTTTCCTTCACGAGGGCTCATCTCCAAAAGACGTTCACATCGTTCAACAACTCTTCGAATCCAACGCCATCCAGGTGTGCGTCGTGCCACGTGGCATGTGCTATCAAATCGAAATGAGTGCTTATCTGGTGGTTATCATGGATACGCAATTCTACAACGGAAAGTACCATGTCTATGAGGATTACCCCATTG</canonical>
            <polymorphic>TCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAAYTTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAAAATCATTAATTTTCTAGTCAAAGGTTTCTAAATCACCTTTTAAAATCGCCCTCCCTCCCAAACGTCCAAATCTTTTCCAGGTCTTCGTCCCAGTGCGTCGTCAAACCCGTCCAGTCGCCGTCGCTCTTCTCACGATGGCCCTCGCCGACGGAACCCCCAAACGATTCCTGCGCCTCTCCGAACACGACGACACCTTCCAAGCGCTTCTAGCAGACATTGAAGACGAATCCCTCCGTGAAGCCGTCTCCTGTGGTGTCGGTTTCCTTCACGAGGGCTCATCTCCAAAAGACGTTCACATCGTTCAACAACTCTTCGAATCCAACGCCATCCAGGTGTGCGTCGTGCCACGTGGCATGTGCTATCAAATCGAAATGAGTGCTTATCTGGTGGTTATCATGGATACGCAATTCTACAACGGAAAGTACCATGTCTATGAGGATTACCCCATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCCTAAAATTATCAGCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAACCTTTGACTAGAAAATTAATGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAACTTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAAAATCATTAATTTTCTAGTCAAAGGTTT</canonical_amplicon>
		<polymorphic_amplicon>GCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAAYTTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAAAATCATTAATTTTCTAGTCAAAGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15562</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>9758</contig_pos>
        <strand></strand>
        <context>GAGCAATTTC[G/A]GACCCAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTC</left_flank>
        <right_flank>GACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAACTTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAAAATCATTAATTTTCTAGTCAAAGGTTTCTAAATCACCTTTTAAAATCGCCCTCCCTCCCAAACGTCCAAATCTTTTCCAGGTCTTCGTCCCAGTGCGTCGTCAAACCCGTCCAGTCGCCGTCGCTCTTCTCACGATGGCCCTCGCCGACGGAACCCCCAAACGATTCCTGCGCCTCTCCGAACACGACGACACCTTCCAAGCGCTTCTAGCAGACATTGAAGACGAATCCCTCCGTGAAGCCGTCTCCTGTGGTGTCGGTTTCCTTCACGAGGGCTCATCTCCAAAAGACGTTCACATCGTTCAACAACTCTTCGAATCCAACGCCATCCAGGTGTGCGTCGTGCCACGTGGCATGTGCTATCAAATC</canonical>
            <polymorphic>AGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCRGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAACTTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAAAATCATTAATTTTCTAGTCAAAGGTTTCTAAATCACCTTTTAAAATCGCCCTCCCTCCCAAACGTCCAAATCTTTTCCAGGTCTTCGTCCCAGTGCGTCGTCAAACCCGTCCAGTCGCCGTCGCTCTTCTCACGATGGCCCTCGCCGACGGAACCCCCAAACGATTCCTGCGCCTCTCCGAACACGACGACACCTTCCAAGCGCTTCTAGCAGACATTGAAGACGAATCCCTCCGTGAAGCCGTCTCCTGTGGTGTCGGTTTCCTTCACGAGGGCTCATCTCCAAAAGACGTTCACATCGTTCAACAACTCTTCGAATCCAACGCCATCCAGGTGTGCGTCGTGCCACGTGGCATGTGCTATCAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 269 231</canonical_bands>
                <polymorphic_bands>769 231</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>472 282 216 30</canonical_bands>
                <polymorphic_bands>754 216 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAATGATCAATTTCAGCCTAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGCCTATTTTCTCATCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTT</canonical_amplicon>
		<polymorphic_amplicon>ATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCRGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15563</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>9711</contig_pos>
        <strand></strand>
        <context>AAAATTATGA[G/A]TTTTAGCCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGA</left_flank>
        <right_flank>TTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGAC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCCATAATGCCTCTAGATTCGCCGCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAACTTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAAAATCATTAATTTTCTAGTCAAAGGTTTCTAAATCACCTTTTAAAATCGCCCTCCCTCCCAAACGTCCAAATCTTTTCCAGGTCTTCGTCCCAGTGCGTCGTCAAACCCGTCCAGTCGCCGTCGCTCTTCTCACGATGGCCCTCGCCGACGGAACCCCCAAACGATTCCTGCGCCTCTCCGAACACGACGACACCTTCCAAGCGCTTCTAGCAGACATTGAAGACGAATCCCTCCGTGAAGCCGTCTCCTGTGGTGTCGGTTTCCTTCACGAGGGCTCATCTCCAAAAGACGTTCACATCGTTCAACAACTCTTCGAATCCA</canonical>
            <polymorphic>TCCCATAATGCCTCTAGATTCGCCGCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGARTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAACTTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAAAATCATTAATTTTCTAGTCAAAGGTTTCTAAATCACCTTTTAAAATCGCCCTCCCTCCCAAACGTCCAAATCTTTTCCAGGTCTTCGTCCCAGTGCGTCGTCAAACCCGTCCAGTCGCCGTCGCTCTTCTCACGATGGCCCTCGCCGACGGAACCCCCAAACGATTCCTGCGCCTCTCCGAACACGACGACACCTTCCAAGCGCTTCTAGCAGACATTGAAGACGAATCCCTCCGTGAAGCCGTCTCCTGTGGTGTCGGTTTCCTTCACGAGGGCTCATCTCCAAAAGACGTTCACATCGTTCAACAACTCTTCGAATCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAATGATCAATTTCAGCCTAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGCCTATTTTCTCATCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTT</canonical_amplicon>
		<polymorphic_amplicon>ATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGARTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15564</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>9643</contig_pos>
        <strand></strand>
        <context>CCAAAATCAT[C/T]AAATTTTGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCAT</left_flank>
        <right_flank>AAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACGTTCAATTTCATGCCACAGACGCGTCCAGTGCCATTGGATTTGGAGATTAAGTCGTTCAATTTGTCCCATAATGCCTCTAGATTCGCCGCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAACTTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAAAATCATTAATTTTCTAGTCAAAGGTTTCTAAATCACCTTTTAAAATCGCCCTCCCTCCCAAACGTCCAAATCTTTTCCAGGTCTTCGTCCCAGTGCGTCGTCAAACCCGTCCAGTCGCCGTCGCTCTTCTCACGATGGCCCTCGCCGACGGAACCCCCAAACGATTCCTGCGCCTCTCCGAACACGACGACACCTTCCAAGCGCTTCTAGCAGACATTGAAGACGAATCCCTCCGTGAAGCCGTCTCCTGTGG</canonical>
            <polymorphic>CCACGTTCAATTTCATGCCACAGACGCGTCCAGTGCCATTGGATTTGGAGATTAAGTCGTTCAATTTGTCCCATAATGCCTCTAGATTCGCCGCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATYAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAACTTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAAAATCATTAATTTTCTAGTCAAAGGTTTCTAAATCACCTTTTAAAATCGCCCTCCCTCCCAAACGTCCAAATCTTTTCCAGGTCTTCGTCCCAGTGCGTCGTCAAACCCGTCCAGTCGCCGTCGCTCTTCTCACGATGGCCCTCGCCGACGGAACCCCCAAACGATTCCTGCGCCTCTCCGAACACGACGACACCTTCCAAGCGCTTCTAGCAGACATTGAAGACGAATCCCTCCGTGAAGCCGTCTCCTGTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAATGATCAATTTCAGCCTAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGCCTATTTTCTCATCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTT</canonical_amplicon>
		<polymorphic_amplicon>ATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATYAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15565</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>9625</contig_pos>
        <strand></strand>
        <context>AAAATKAKCA[G/A]TTTCAGCCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCA</left_flank>
        <right_flank>TTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGATGCTCGGCAGCCGCCACGTTCAATTTCATGCCACAGACGCGTCCAGTGCCATTGGATTTGGAGATTAAGTCGTTCAATTTGTCCCATAATGCCTCTAGATTCGCCGCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAACTTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAAAATCATTAATTTTCTAGTCAAAGGTTTCTAAATCACCTTTTAAAATCGCCCTCCCTCCCAAACGTCCAAATCTTTTCCAGGTCTTCGTCCCAGTGCGTCGTCAAACCCGTCCAGTCGCCGTCGCTCTTCTCACGATGGCCCTCGCCGACGGAACCCCCAAACGATTCCTGCGCCTCTCCGAACACGACGACACCTTCCAAGCGCTTCTAGCAGACATTGAAGACGAATCCCTCCG</canonical>
            <polymorphic>TCGGATGCTCGGCAGCCGCCACGTTCAATTTCATGCCACAGACGCGTCCAGTGCCATTGGATTTGGAGATTAAGTCGTTCAATTTGTCCCATAATGCCTCTAGATTCGCCGCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCARTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAACTTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAAAATCATTAATTTTCTAGTCAAAGGTTTCTAAATCACCTTTTAAAATCGCCCTCCCTCCCAAACGTCCAAATCTTTTCCAGGTCTTCGTCCCAGTGCGTCGTCAAACCCGTCCAGTCGCCGTCGCTCTTCTCACGATGGCCCTCGCCGACGGAACCCCCAAACGATTCCTGCGCCTCTCCGAACACGACGACACCTTCCAAGCGCTTCTAGCAGACATTGAAGACGAATCCCTCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAATGATCAATTTCAGCCTAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGCCTATTTTCTCATCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTT</canonical_amplicon>
		<polymorphic_amplicon>ATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15566</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>9622</contig_pos>
        <strand></strand>
        <context>CTGAAAATKA[G/T]CARTTTCAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGA</left_flank>
        <right_flank>CAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCTCGGATGCTCGGCAGCCGCCACGTTCAATTTCATGCCACAGACGCGTCCAGTGCCATTGGATTTGGAGATTAAGTCGTTCAATTTGTCCCATAATGCCTCTAGATTCGCCGCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAACTTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAAAATCATTAATTTTCTAGTCAAAGGTTTCTAAATCACCTTTTAAAATCGCCCTCCCTCCCAAACGTCCAAATCTTTTCCAGGTCTTCGTCCCAGTGCGTCGTCAAACCCGTCCAGTCGCCGTCGCTCTTCTCACGATGGCCCTCGCCGACGGAACCCCCAAACGATTCCTGCGCCTCTCCGAACACGACGACACCTTCCAAGCGCTTCTAGCAGACATTGAAGACGAATCCCT</canonical>
            <polymorphic>GGCTCGGATGCTCGGCAGCCGCCACGTTCAATTTCATGCCACAGACGCGTCCAGTGCCATTGGATTTGGAGATTAAGTCGTTCAATTTGTCCCATAATGCCTCTAGATTCGCCGCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAKCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAACTTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAAAATCATTAATTTTCTAGTCAAAGGTTTCTAAATCACCTTTTAAAATCGCCCTCCCTCCCAAACGTCCAAATCTTTTCCAGGTCTTCGTCCCAGTGCGTCGTCAAACCCGTCCAGTCGCCGTCGCTCTTCTCACGATGGCCCTCGCCGACGGAACCCCCAAACGATTCCTGCGCCTCTCCGAACACGACGACACCTTCCAAGCGCTTCTAGCAGACATTGAAGACGAATCCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>367 277 86 84 66 44 42 25 9</canonical_bands>
                <polymorphic_bands>453 277 84 66 44 42 25 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTTCGAAGCTGAAAATGA</pcr_primer_p1>
		<pcr_primer_p2>GAAGCTGATATTTCTGGCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>CTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAKCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTC</canonical_amplicon>
		<polymorphic_amplicon>CTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAKCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15567</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>9620</contig_pos>
        <strand></strand>
        <context>AGCTGAAAAT[G/T]AKCARTTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAAT</left_flank>
        <right_flank>AGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGCTCGGATGCTCGGCAGCCGCCACGTTCAATTTCATGCCACAGACGCGTCCAGTGCCATTGGATTTGGAGATTAAGTCGTTCAATTTGTCCCATAATGCCTCTAGATTCGCCGCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAACTTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAAAATCATTAATTTTCTAGTCAAAGGTTTCTAAATCACCTTTTAAAATCGCCCTCCCTCCCAAACGTCCAAATCTTTTCCAGGTCTTCGTCCCAGTGCGTCGTCAAACCCGTCCAGTCGCCGTCGCTCTTCTCACGATGGCCCTCGCCGACGGAACCCCCAAACGATTCCTGCGCCTCTCCGAACACGACGACACCTTCCAAGCGCTTCTAGCAGACATTGAAGACGAATCC</canonical>
            <polymorphic>GTGGCTCGGATGCTCGGCAGCCGCCACGTTCAATTTCATGCCACAGACGCGTCCAGTGCCATTGGATTTGGAGATTAAGTCGTTCAATTTGTCCCATAATGCCTCTAGATTCGCCGCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATKAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAACTTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAAAATCATTAATTTTCTAGTCAAAGGTTTCTAAATCACCTTTTAAAATCGCCCTCCCTCCCAAACGTCCAAATCTTTTCCAGGTCTTCGTCCCAGTGCGTCGTCAAACCCGTCCAGTCGCCGTCGCTCTTCTCACGATGGCCCTCGCCGACGGAACCCCCAAACGATTCCTGCGCCTCTCCGAACACGACGACACCTTCCAAGCGCTTCTAGCAGACATTGAAGACGAATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTTCGAAGCTGAAAATGA</pcr_primer_p1>
		<pcr_primer_p2>GAAGCTGATATTTCTGGCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>CTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATKAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTC</canonical_amplicon>
		<polymorphic_amplicon>CTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATKAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15568</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>9563</contig_pos>
        <strand></strand>
        <context>TTATCATATT[T/G]TGATGCTATA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATT</left_flank>
        <right_flank>TGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTGTACGTGTTGTTGCTCTCTCCTCATCTCTCACCAACGCCAGAGACTTGGGAATGTGGCTCGGATGCTCGGCAGCCGCCACGTTCAATTTCATGCCACAGACGCGTCCAGTGCCATTGGATTTGGAGATTAAGTCGTTCAATTTGTCCCATAATGCCTCTAGATTCGCCGCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAACTTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAAAATCATTAATTTTCTAGTCAAAGGTTTCTAAATCACCTTTTAAAATCGCCCTCCCTCCCAAACGTCCAAATCTTTTCCAGGTCTTCGTCCCAGTGCGTCGTCAAACCCGTCCAGTCGCCGTCGCTCTTCTCACGATGGCCCTCGCCGACGGAACCCCCAAACGATTCCTGCGC</canonical>
            <polymorphic>TGCTGTACGTGTTGTTGCTCTCTCCTCATCTCTCACCAACGCCAGAGACTTGGGAATGTGGCTCGGATGCTCGGCAGCCGCCACGTTCAATTTCATGCCACAGACGCGTCCAGTGCCATTGGATTTGGAGATTAAGTCGTTCAATTTGTCCCATAATGCCTCTAGATTCGCCGCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTKTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAACTTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAAAATCATTAATTTTCTAGTCAAAGGTTTCTAAATCACCTTTTAAAATCGCCCTCCCTCCCAAACGTCCAAATCTTTTCCAGGTCTTCGTCCCAGTGCGTCGTCAAACCCGTCCAGTCGCCGTCGCTCTTCTCACGATGGCCCTCGCCGACGGAACCCCCAAACGATTCCTGCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCAGCCCAAAATTATCA</pcr_primer_p1>
		<pcr_primer_p2>GCTCATTTCAGCTTCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTKTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15569</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>9539</contig_pos>
        <strand></strand>
        <context>AAAATGAGMA[G/A]TTTCAGCCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCA</left_flank>
        <right_flank>TTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATATTTCCTCTCAATTGGACTCTGCTGTACGTGTTGTTGCTCTCTCCTCATCTCTCACCAACGCCAGAGACTTGGGAATGTGGCTCGGATGCTCGGCAGCCGCCACGTTCAATTTCATGCCACAGACGCGTCCAGTGCCATTGGATTTGGAGATTAAGTCGTTCAATTTGTCCCATAATGCCTCTAGATTCGCCGCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAACTTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAAAATCATTAATTTTCTAGTCAAAGGTTTCTAAATCACCTTTTAAAATCGCCCTCCCTCCCAAACGTCCAAATCTTTTCCAGGTCTTCGTCCCAGTGCGTCGTCAAACCCGTCCAGTCGCCGTCGCTCTTCTCACGATGGCCCTCGCCGAC</canonical>
            <polymorphic>CTATATTTCCTCTCAATTGGACTCTGCTGTACGTGTTGTTGCTCTCTCCTCATCTCTCACCAACGCCAGAGACTTGGGAATGTGGCTCGGATGCTCGGCAGCCGCCACGTTCAATTTCATGCCACAGACGCGTCCAGTGCCATTGGATTTGGAGATTAAGTCGTTCAATTTGTCCCATAATGCCTCTAGATTCGCCGCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCARTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAACTTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAAAATCATTAATTTTCTAGTCAAAGGTTTCTAAATCACCTTTTAAAATCGCCCTCCCTCCCAAACGTCCAAATCTTTTCCAGGTCTTCGTCCCAGTGCGTCGTCAAACCCGTCCAGTCGCCGTCGCTCTTCTCACGATGGCCCTCGCCGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCAGCCCAAAATTATCA</pcr_primer_p1>
		<pcr_primer_p2>GCTCATTTCAGCTTCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCARTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15570</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>9537</contig_pos>
        <strand></strand>
        <context>TGAAAATGAG[C/A]ARTTTCAGCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAG</left_flank>
        <right_flank>AGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCTATATTTCCTCTCAATTGGACTCTGCTGTACGTGTTGTTGCTCTCTCCTCATCTCTCACCAACGCCAGAGACTTGGGAATGTGGCTCGGATGCTCGGCAGCCGCCACGTTCAATTTCATGCCACAGACGCGTCCAGTGCCATTGGATTTGGAGATTAAGTCGTTCAATTTGTCCCATAATGCCTCTAGATTCGCCGCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAACTTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAAAATCATTAATTTTCTAGTCAAAGGTTTCTAAATCACCTTTTAAAATCGCCCTCCCTCCCAAACGTCCAAATCTTTTCCAGGTCTTCGTCCCAGTGCGTCGTCAAACCCGTCCAGTCGCCGTCGCTCTTCTCACGATGGCCCTCGCCG</canonical>
            <polymorphic>CGCTATATTTCCTCTCAATTGGACTCTGCTGTACGTGTTGTTGCTCTCTCCTCATCTCTCACCAACGCCAGAGACTTGGGAATGTGGCTCGGATGCTCGGCAGCCGCCACGTTCAATTTCATGCCACAGACGCGTCCAGTGCCATTGGATTTGGAGATTAAGTCGTTCAATTTGTCCCATAATGCCTCTAGATTCGCCGCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGMAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAACTTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAAAATCATTAATTTTCTAGTCAAAGGTTTCTAAATCACCTTTTAAAATCGCCCTCCCTCCCAAACGTCCAAATCTTTTCCAGGTCTTCGTCCCAGTGCGTCGTCAAACCCGTCCAGTCGCCGTCGCTCTTCTCACGATGGCCCTCGCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>367 217 129 86 84 66 42 9</canonical_bands>
                <polymorphic_bands>453 217 129 84 66 42 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCAGCCCAAAATTATCA</pcr_primer_p1>
		<pcr_primer_p2>GCTCATTTCAGCTTCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGMAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15571</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>9516</contig_pos>
        <strand></strand>
        <context>RAAATCATCA[G/A]ATTTCGAAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCA</left_flank>
        <right_flank>ATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGTTGTGTGCTCCAGAACTCGCTATATTTCCTCTCAATTGGACTCTGCTGTACGTGTTGTTGCTCTCTCCTCATCTCTCACCAACGCCAGAGACTTGGGAATGTGGCTCGGATGCTCGGCAGCCGCCACGTTCAATTTCATGCCACAGACGCGTCCAGTGCCATTGGATTTGGAGATTAAGTCGTTCAATTTGTCCCATAATGCCTCTAGATTCGCCGCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAACTTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAAAATCATTAATTTTCTAGTCAAAGGTTTCTAAATCACCTTTTAAAATCGCCCTCCCTCCCAAACGTCCAAATCTTTTCCAGGTCTTCGTCCCAGTGCGTCGTCAAACCCGTCCAGTCGCCGTCGCTC</canonical>
            <polymorphic>GAAGTTGTGTGCTCCAGAACTCGCTATATTTCCTCTCAATTGGACTCTGCTGTACGTGTTGTTGCTCTCTCCTCATCTCTCACCAACGCCAGAGACTTGGGAATGTGGCTCGGATGCTCGGCAGCCGCCACGTTCAATTTCATGCCACAGACGCGTCCAGTGCCATTGGATTTGGAGATTAAGTCGTTCAATTTGTCCCATAATGCCTCTAGATTCGCCGCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCARATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAACTTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAAAATCATTAATTTTCTAGTCAAAGGTTTCTAAATCACCTTTTAAAATCGCCCTCCCTCCCAAACGTCCAAATCTTTTCCAGGTCTTCGTCCCAGTGCGTCGTCAAACCCGTCCAGTCGCCGTCGCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>237 220 195 112 86 43 43 23 21 20</canonical_bands>
                <polymorphic_bands>237 220 195 112 86 86 23 21 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCAGCCCAAAATTATCA</pcr_primer_p1>
		<pcr_primer_p2>GCTCATTTCAGCTTCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15572</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>9506</contig_pos>
        <strand></strand>
        <context>RTTTCAGCCC[G/A]AAATCATCAR</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCC</left_flank>
        <right_flank>AAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTGTGTTTGAAGTTGTGTGCTCCAGAACTCGCTATATTTCCTCTCAATTGGACTCTGCTGTACGTGTTGTTGCTCTCTCCTCATCTCTCACCAACGCCAGAGACTTGGGAATGTGGCTCGGATGCTCGGCAGCCGCCACGTTCAATTTCATGCCACAGACGCGTCCAGTGCCATTGGATTTGGAGATTAAGTCGTTCAATTTGTCCCATAATGCCTCTAGATTCGCCGCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAACTTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAAAATCATTAATTTTCTAGTCAAAGGTTTCTAAATCACCTTTTAAAATCGCCCTCCCTCCCAAACGTCCAAATCTTTTCCAGGTCTTCGTCCCAGTGCGTCGTCAAACCCGTCCAGTC</canonical>
            <polymorphic>ACCTGTGTTTGAAGTTGTGTGCTCCAGAACTCGCTATATTTCCTCTCAATTGGACTCTGCTGTACGTGTTGTTGCTCTCTCCTCATCTCTCACCAACGCCAGAGACTTGGGAATGTGGCTCGGATGCTCGGCAGCCGCCACGTTCAATTTCATGCCACAGACGCGTCCAGTGCCATTGGATTTGGAGATTAAGTCGTTCAATTTGTCCCATAATGCCTCTAGATTCGCCGCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCRAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAACTTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAAAATCATTAATTTTCTAGTCAAAGGTTTCTAAATCACCTTTTAAAATCGCCCTCCCTCCCAAACGTCCAAATCTTTTCCAGGTCTTCGTCCCAGTGCGTCGTCAAACCCGTCCAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAAAACGTCAGAGAAAATACA</pcr_primer_p1>
		<pcr_primer_p2>AATATGATAATTTTGGGCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>GCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATT</canonical_amplicon>
		<polymorphic_amplicon>GCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCRAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15573</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>9496</contig_pos>
        <strand></strand>
        <context>AAAATGAKCA[A/G]TTTCAGCCCR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCA</left_flank>
        <right_flank>TTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAACAATGGACCTGTGTTTGAAGTTGTGTGCTCCAGAACTCGCTATATTTCCTCTCAATTGGACTCTGCTGTACGTGTTGTTGCTCTCTCCTCATCTCTCACCAACGCCAGAGACTTGGGAATGTGGCTCGGATGCTCGGCAGCCGCCACGTTCAATTTCATGCCACAGACGCGTCCAGTGCCATTGGATTTGGAGATTAAGTCGTTCAATTTGTCCCATAATGCCTCTAGATTCGCCGCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAACTTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAAAATCATTAATTTTCTAGTCAAAGGTTTCTAAATCACCTTTTAAAATCGCCCTCCCTCCCAAACGTCCAAATCTTTTCCAGGTCTTCGTCCCAGTGCGTCGTCAAAC</canonical>
            <polymorphic>CCAACAATGGACCTGTGTTTGAAGTTGTGTGCTCCAGAACTCGCTATATTTCCTCTCAATTGGACTCTGCTGTACGTGTTGTTGCTCTCTCCTCATCTCTCACCAACGCCAGAGACTTGGGAATGTGGCTCGGATGCTCGGCAGCCGCCACGTTCAATTTCATGCCACAGACGCGTCCAGTGCCATTGGATTTGGAGATTAAGTCGTTCAATTTGTCCCATAATGCCTCTAGATTCGCCGCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCARTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAACTTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAAAATCATTAATTTTCTAGTCAAAGGTTTCTAAATCACCTTTTAAAATCGCCCTCCCTCCCAAACGTCCAAATCTTTTCCAGGTCTTCGTCCCAGTGCGTCGTCAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>99 98 76 64 64 57 56 54 49 47 44 43 43 40 35 30 30 23 21 14 13</canonical_bands>
                <polymorphic_bands>99 99 98 76 64 64 57 54 49 47 44 43 40 35 30 30 23 21 14 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTAAAACGTCAGAGAAAATACA</pcr_primer_p1>
		<pcr_primer_p2>AATATGATAATTTTGGGCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>GCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATT</canonical_amplicon>
		<polymorphic_amplicon>GCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCARTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15574</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>9493</contig_pos>
        <strand></strand>
        <context>CTGAAAATGA[T/G]CARTTTCAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGA</left_flank>
        <right_flank>CAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTC</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGCCAACAATGGACCTGTGTTTGAAGTTGTGTGCTCCAGAACTCGCTATATTTCCTCTCAATTGGACTCTGCTGTACGTGTTGTTGCTCTCTCCTCATCTCTCACCAACGCCAGAGACTTGGGAATGTGGCTCGGATGCTCGGCAGCCGCCACGTTCAATTTCATGCCACAGACGCGTCCAGTGCCATTGGATTTGGAGATTAAGTCGTTCAATTTGTCCCATAATGCCTCTAGATTCGCCGCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAACTTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAAAATCATTAATTTTCTAGTCAAAGGTTTCTAAATCACCTTTTAAAATCGCCCTCCCTCCCAAACGTCCAAATCTTTTCCAGGTCTTCGTCCCAGTGCGTCGTCA</canonical>
            <polymorphic>GTGCCAACAATGGACCTGTGTTTGAAGTTGTGTGCTCCAGAACTCGCTATATTTCCTCTCAATTGGACTCTGCTGTACGTGTTGTTGCTCTCTCCTCATCTCTCACCAACGCCAGAGACTTGGGAATGTGGCTCGGATGCTCGGCAGCCGCCACGTTCAATTTCATGCCACAGACGCGTCCAGTGCCATTGGATTTGGAGATTAAGTCGTTCAATTTGTCCCATAATGCCTCTAGATTCGCCGCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGAKCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAACTTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAAAATCATTAATTTTCTAGTCAAAGGTTTCTAAATCACCTTTTAAAATCGCCCTCCCTCCCAAACGTCCAAATCTTTTCCAGGTCTTCGTCCCAGTGCGTCGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>454 417 86 43</canonical_bands>
                <polymorphic_bands>454 417 129</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>454 417 86 43</canonical_bands>
                <polymorphic_bands>454 417 129</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTAAAACGTCAGAGAAAATACA</pcr_primer_p1>
		<pcr_primer_p2>AATATGATAATTTTGGGCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>GCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATT</canonical_amplicon>
		<polymorphic_amplicon>GCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGAKCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15575</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>9430</contig_pos>
        <strand></strand>
        <context>AAAATTATCA[G/T]ATTTTGATGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCA</left_flank>
        <right_flank>ATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAAGCAGAGGAAATCAGTGCAAAATGTGAAACTGTTCATCGCAGACGACCTGCATATGATTGGTGCCAACAATGGACCTGTGTTTGAAGTTGTGTGCTCCAGAACTCGCTATATTTCCTCTCAATTGGACTCTGCTGTACGTGTTGTTGCTCTCTCCTCATCTCTCACCAACGCCAGAGACTTGGGAATGTGGCTCGGATGCTCGGCAGCCGCCACGTTCAATTTCATGCCACAGACGCGTCCAGTGCCATTGGATTTGGAGATTAAGTCGTTCAATTTGTCCCATAATGCCTCTAGATTCGCCGCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAACTTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAAAATCATTAATTTTCTAGTCAAAGGTTTCTAAATCACCTTT</canonical>
            <polymorphic>GGAAGCAGAGGAAATCAGTGCAAAATGTGAAACTGTTCATCGCAGACGACCTGCATATGATTGGTGCCAACAATGGACCTGTGTTTGAAGTTGTGTGCTCCAGAACTCGCTATATTTCCTCTCAATTGGACTCTGCTGTACGTGTTGTTGCTCTCTCCTCATCTCTCACCAACGCCAGAGACTTGGGAATGTGGCTCGGATGCTCGGCAGCCGCCACGTTCAATTTCATGCCACAGACGCGTCCAGTGCCATTGGATTTGGAGATTAAGTCGTTCAATTTGTCCCATAATGCCTCTAGATTCGCCGCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAKATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTGAAAAATGTCGAACTTCCCATTGAAATTGATATTTTTGACCGGCAAAAATAAAAATAAGATGAAAATCATTAATTTTCTAGTCAAAGGTTTCTAAATCACCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>220 198 195 151 86 43 43 23 21 20</canonical_bands>
                <polymorphic_bands>220 198 195 151 129 43 23 21 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTATGGAACGACCAGTTTAT</pcr_primer_p1>
		<pcr_primer_p2>AGCTTCGAAATAGGACATTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCT</canonical_amplicon>
		<polymorphic_amplicon>GCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAKATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15576</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>9327</contig_pos>
        <strand></strand>
        <context>ATTTTCAGAA[T/C]TAGCGCTAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAA</left_flank>
        <right_flank>TAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCG</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCGTTCTTCTGACAGGAGAGCAAACGCTTGATTTGAAGCTAGCTCAACGCGGACAGCTCATTATCTCGACGCCAGAACGATGGGATAACATCTCGCGGCGATGGAAGCAGAGGAAATCAGTGCAAAATGTGAAACTGTTCATCGCAGACGACCTGCATATGATTGGTGCCAACAATGGACCTGTGTTTGAAGTTGTGTGCTCCAGAACTCGCTATATTTCCTCTCAATTGGACTCTGCTGTACGTGTTGTTGCTCTCTCCTCATCTCTCACCAACGCCAGAGACTTGGGAATGTGGCTCGGATGCTCGGCAGCCGCCACGTTCAATTTCATGCCACAGACGCGTCCAGTGCCATTGGATTTGGAGATTAAGTCGTTCAATTTGTCCCATAATGCCTCTAGATTCGCCGCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTG</canonical>
            <polymorphic>GTCGTTCTTCTGACAGGAGAGCAAACGCTTGATTTGAAGCTAGCTCAACGCGGACAGCTCATTATCTCGACGCCAGAACGATGGGATAACATCTCGCGGCGATGGAAGCAGAGGAAATCAGTGCAAAATGTGAAACTGTTCATCGCAGACGACCTGCATATGATTGGTGCCAACAATGGACCTGTGTTTGAAGTTGTGTGCTCCAGAACTCGCTATATTTCCTCTCAATTGGACTCTGCTGTACGTGTTGTTGCTCTCTCCTCATCTCTCACCAACGCCAGAGACTTGGGAATGTGGCTCGGATGCTCGGCAGCCGCCACGTTCAATTTCATGCCACAGACGCGTCCAGTGCCATTGGATTTGGAGATTAAGTCGTTCAATTTGTCCCATAATGCCTCTAGATTCGCCGCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAAYTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGCTTTTTCAGCTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>226 98 76 64 56 54 49 44 43 43 41 40 35 30 30 23 21 14 13</canonical_bands>
                <polymorphic_bands>226 98 83 76 64 56 54 49 44 43 41 35 30 30 23 21 14 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTATGGAACGACCAGTTTAT</pcr_primer_p1>
		<pcr_primer_p2>AGCTTCGAAATAGGACATTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCT</canonical_amplicon>
		<polymorphic_amplicon>GCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAAYTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15577</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>9315</contig_pos>
        <strand></strand>
        <context>GTGAGTTTTG[A/G]GATTTTCAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTG</left_flank>
        <right_flank>GATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGGACACACCGTCGTTCTTCTGACAGGAGAGCAAACGCTTGATTTGAAGCTAGCTCAACGCGGACAGCTCATTATCTCGACGCCAGAACGATGGGATAACATCTCGCGGCGATGGAAGCAGAGGAAATCAGTGCAAAATGTGAAACTGTTCATCGCAGACGACCTGCATATGATTGGTGCCAACAATGGACCTGTGTTTGAAGTTGTGTGCTCCAGAACTCGCTATATTTCCTCTCAATTGGACTCTGCTGTACGTGTTGTTGCTCTCTCCTCATCTCTCACCAACGCCAGAGACTTGGGAATGTGGCTCGGATGCTCGGCAGCCGCCACGTTCAATTTCATGCCACAGACGCGTCCAGTGCCATTGGATTTGGAGATTAAGTCGTTCAATTTGTCCCATAATGCCTCTAGATTCGCCGCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGC</canonical>
            <polymorphic>ATCGGACACACCGTCGTTCTTCTGACAGGAGAGCAAACGCTTGATTTGAAGCTAGCTCAACGCGGACAGCTCATTATCTCGACGCCAGAACGATGGGATAACATCTCGCGGCGATGGAAGCAGAGGAAATCAGTGCAAAATGTGAAACTGTTCATCGCAGACGACCTGCATATGATTGGTGCCAACAATGGACCTGTGTTTGAAGTTGTGTGCTCCAGAACTCGCTATATTTCCTCTCAATTGGACTCTGCTGTACGTGTTGTTGCTCTCTCCTCATCTCTCACCAACGCCAGAGACTTGGGAATGTGGCTCGGATGCTCGGCAGCCGCCACGTTCAATTTCATGCCACAGACGCGTCCAGTGCCATTGGATTTGGAGATTAAGTCGTTCAATTTGTCCCATAATGCCTCTAGATTCGCCGCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGRGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCTGAAAATGATCAATTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATTATCATATTTTGATGCTATAAATGATCAATTTCAGCCTAAAAATGTCCTGTTTCGAAGCTGAAAATGAGCAGTTTCAGCCCAAAATCATCAAATTTTGAAGCTGAAATGAGCAATTTCGCTCCTAAAATTATCAGCTTTTTAAGCTGAAAATTATGAGTTTTAGCCAGAAATATCAGCTTCTGAAGCTGAAAATGAGCAATTTCGGACCCAAAATGATAGATTTCCGACCAAAAATTATCAAGTTTTGATGAGAAAATAGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTATGGAACGACCAGTTTAT</pcr_primer_p1>
		<pcr_primer_p2>AGCTTCGAAATAGGACATTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGAGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCT</canonical_amplicon>
		<polymorphic_amplicon>GCTATGGAACGACCAGTTTATCAAGCGATTTGCAGACACGCAGGAAAATTGGAGCCGAAACCAGCATTGGTGAGTTTTGRGATTTTCAGAATTAGCGCTAAAACGTCAGAGAAAATACATTTTATGATGAATTTTCAGCCCGAAATCATCAGATTTCGAAGCTGAAAATGAGAAATTTCAGCCCAAAATTATCAGATTTTGATGCTATAAATGATCAATTTCAGCCAAAAAATGTCCTATTTCGAAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15578</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>24281</contig_pos>
        <strand>+</strand>
        <context>TGTCGCCCGA[A/G]CCAAATGCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCGCGCGTTGTTTACCGTAAATCCATACTGGTTTTGCAGCTGTCGCCCGA</left_flank>
        <right_flank>CCAAATGCACTGAAATCATTCTTTCTAGCTCATTTTTCTTGGATTTTGAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAGTTCAAAAAATCGATAATTTGGTTCAGGAATCAGCACAGACGCAGTTGTTCTTCTCCTCCGAGCAAATCAGCGTTTTGTTGGGGCAGAACTGGAAAACTTTGGATTTTTTAGGGTCTAGAAGCTTCTGGAAGCTCACATTGTAGAAAAGTGTATTGCACATCCATTCCCAACAGTACCCGAATTCTTCTGATAGGCAAATAGAGAGAAAAAGTGCGAAAATTGAGAGGATTCTCATTTTTGGGCATAAAAATGCTTTTTGAGCGATGAAACTGTTGTTTAGAGCGAAAATACGTGTTTTTTCTCAACAAAATTTAGGCTTTCTTAAGTGTTGAGCTGGGAAAAGCACTAAAAATGACTTAAAATACCTGAAAATCACCTAAAAATTCCAAATTCAAAAAACCAAATTCAAACTACCGCCAACAACGACACTCCGAAATCCCGCTTGCGCGCGTTGTTTACCGTAAATCCATACTGGTTTTGCAGCTGTCGCCCGAGCCAAATGCACTGAAATCATTCTTTCTAGCTCATTTTTCTTGGATTTTGACCAAAAAATCAAGGAAACCAAATTTTCAGACACTTCGGGTCCCCGCAAAATGCTCAGTCGGCACATTTTTCAGTGTTCTAGGCTCGGCTTTGCTCCTTCAACGAGTCAAGCCGTTTTTCATACTTCCACAGTGAATTCTGTGCTTCCTAGGGTAAAAAATTGTGGTTTTGAAGGATAAAACGCTCTAATTTTTCAGGCAAAACCGCTAGACGAGGAAATGCCGGCGCCCGCTGCTTTGAAGACTTTGGAATCCAAAAAATCTCGCCCGGATTTTCAAATTTTGGATTTATCATCTGGAAAACGACATAAGAAGGATATTGATATCATCGGTATGATAAACATCTGTTTTTTAATGATTTTTAGGCCAAAAATTTAATTTCTTCCAGTCACCGATCAGTACCTCCAACAATGGTATAAAATGGAGACGAAAAGTCTAGCAGCCGATTATTTA</canonical>
            <polymorphic>TTTAGTTCAAAAAATCGATAATTTGGTTCAGGAATCAGCACAGACGCAGTTGTTCTTCTCCTCCGAGCAAATCAGCGTTTTGTTGGGGCAGAACTGGAAAACTTTGGATTTTTTAGGGTCTAGAAGCTTCTGGAAGCTCACATTGTAGAAAAGTGTATTGCACATCCATTCCCAACAGTACCCGAATTCTTCTGATAGGCAAATAGAGAGAAAAAGTGCGAAAATTGAGAGGATTCTCATTTTTGGGCATAAAAATGCTTTTTGAGCGATGAAACTGTTGTTTAGAGCGAAAATACGTGTTTTTTCTCAACAAAATTTAGGCTTTCTTAAGTGTTGAGCTGGGAAAAGCACTAAAAATGACTTAAAATACCTGAAAATCACCTAAAAATTCCAAATTCAAAAAACCAAATTCAAACTACCGCCAACAACGACACTCCGAAATCCCGCTTGCGCGCGTTGTTTACCGTAAATCCATACTGGTTTTGCAGCTGTCGCCCGARCCAAATGCACTGAAATCATTCTTTCTAGCTCATTTTTCTTGGATTTTGACCAAAAAATCAAGGAAACCAAATTTTCAGACACTTCGGGTCCCCGCAAAATGCTCAGTCGGCACATTTTTCAGTGTTCTAGGCTCGGCTTTGCTCCTTCAACGAGTCAAGCCGTTTTTCATACTTCCACAGTGAATTCTGTGCTTCCTAGGGTAAAAAATTGTGGTTTTGAAGGATAAAACGCTCTAATTTTTCAGGCAAAACCGCTAGACGAGGAAATGCCGGCGCCCGCTGCTTTGAAGACTTTGGAATCCAAAAAATCTCGCCCGGATTTTCAAATTTTGGATTTATCATCTGGAAAACGACATAAGAAGGATATTGATATCATCGGTATGATAAACATCTGTTTTTTAATGATTTTTAGGCCAAAAATTTAATTTCTTCCAGTCACCGATCAGTACCTCCAACAATGGTATAAAATGGAGACGAAAAGTCTAGCAGCCGATTATTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>254 185 150 126 103 76 28 23 17 12 11 10 5</canonical_bands>
                <polymorphic_bands>254 185 150 126 103 76 40 23 17 11 10 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAAAGCACTAAAAATGACTTA</pcr_primer_p1>
		<pcr_primer_p2>AAGTGTCTGAAAATTTGGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GGAAAAGCACTAAAAATGACTTAAAATACCTGAAAATCACCTAAAAATTCCAAATTCAAAAAACCAAATTCAAACTACCGCCAACAACGACACTCCGAAATCCCGCTTGCGCGCGTTGTTTACCGTAAATCCATACTGGTTTTGCAGCTGTCGCCCGAGCCAAATGCACTGAAATCATTCTTTCTAGCTCATTTTTCTTGGATTTTGACCAAAAAATCAAGGAAACCAAATTTTCAGACACTT</canonical_amplicon>
		<polymorphic_amplicon>GGAAAAGCACTAAAAATGACTTAAAATACCTGAAAATCACCTAAAAATTCCAAATTCAAAAAACCAAATTCAAACTACCGCCAACAACGACACTCCGAAATCCCGCTTGCGCGCGTTGTTTACCGTAAATCCATACTGGTTTTGCAGCTGTCGCCCGARCCAAATGCACTGAAATCATTCTTTCTAGCTCATTTTTCTTGGATTTTGACCAAAAAATCAAGGAAACCAAATTTTCAGACACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15579</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>24458</contig_pos>
        <strand>+</strand>
        <context>TCATACTTCC[A/T]CAGTGAATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTAGGCTCGGCTTTGCTCCTTCAACGAGTCAAGCCGTTTTTCATACTTCC</left_flank>
        <right_flank>CAGTGAATTCTGTGCTTCCTAGGGTAAAAAATTGTGGTTTTGAAGGATAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTACCCGAATTCTTCTGATAGGCAAATAGAGAGAAAAAGTGCGAAAATTGAGAGGATTCTCATTTTTGGGCATAAAAATGCTTTTTGAGCGATGAAACTGTTGTTTAGAGCGAAAATACGTGTTTTTTCTCAACAAAATTTAGGCTTTCTTAAGTGTTGAGCTGGGAAAAGCACTAAAAATGACTTAAAATACCTGAAAATCACCTAAAAATTCCAAATTCAAAAAACCAAATTCAAACTACCGCCAACAACGACACTCCGAAATCCCGCTTGCGCGCGTTGTTTACCGTAAATCCATACTGGTTTTGCAGCTGTCGCCCGAGCCAAATGCACTGAAATCATTCTTTCTAGCTCATTTTTCTTGGATTTTGACCAAAAAATCAAGGAAACCAAATTTTCAGACACTTCGGGTCCCCGCAAAATGCTCAGTCGGCACATTTTTCAGTGTTCTAGGCTCGGCTTTGCTCCTTCAACGAGTCAAGCCGTTTTTCATACTTCCACAGTGAATTCTGTGCTTCCTAGGGTAAAAAATTGTGGTTTTGAAGGATAAAACGCTCTAATTTTTCAGGCAAAACCGCTAGACGAGGAAATGCCGGCGCCCGCTGCTTTGAAGACTTTGGAATCCAAAAAATCTCGCCCGGATTTTCAAATTTTGGATTTATCATCTGGAAAACGACATAAGAAGGATATTGATATCATCGGTATGATAAACATCTGTTTTTTAATGATTTTTAGGCCAAAAATTTAATTTCTTCCAGTCACCGATCAGTACCTCCAACAATGGTATAAAATGGAGACGAAAAGTCTAGCAGCCGATTATTTAGCGCTTTGCAAGTCGAAATTAAGCTTATTTGTTGCTTCAACAGGTAGTTCTTCGTCTTTTTTTCGTTTAAATAGACAGAAAATCTATTTCGAATTTTTGCATTTTTCAGCGACCTGCGGCTTCCTGATGGCTCCAGTACCCGTGGCAGCGGCTCCACTAGCTGCAGCGACGATTGGT</canonical>
            <polymorphic>GTACCCGAATTCTTCTGATAGGCAAATAGAGAGAAAAAGTGCGAAAATTGAGAGGATTCTCATTTTTGGGCATAAAAATGCTTTTTGAGCGATGAAACTGTTGTTTAGAGCGAAAATACGTGTTTTTTCTCAACAAAATTTAGGCTTTCTTAAGTGTTGAGCTGGGAAAAGCACTAAAAATGACTTAAAATACCTGAAAATCACCTAAAAATTCCAAATTCAAAAAACCAAATTCAAACTACCGCCAACAACGACACTCCGAAATCCCGCTTGCGCGCGTTGTTTACCGTAAATCCATACTGGTTTTGCAGCTGTCGCCCGAGCCAAATGCACTGAAATCATTCTTTCTAGCTCATTTTTCTTGGATTTTGACCAAAAAATCAAGGAAACCAAATTTTCAGACACTTCGGGTCCCCGCAAAATGCTCAGTCGGCACATTTTTCAGTGTTCTAGGCTCGGCTTTGCTCCTTCAACGAGTCAAGCCGTTTTTCATACTTCCWCAGTGAATTCTGTGCTTCCTAGGGTAAAAAATTGTGGTTTTGAAGGATAAAACGCTCTAATTTTTCAGGCAAAACCGCTAGACGAGGAAATGCCGGCGCCCGCTGCTTTGAAGACTTTGGAATCCAAAAAATCTCGCCCGGATTTTCAAATTTTGGATTTATCATCTGGAAAACGACATAAGAAGGATATTGATATCATCGGTATGATAAACATCTGTTTTTTAATGATTTTTAGGCCAAAAATTTAATTTCTTCCAGTCACCGATCAGTACCTCCAACAATGGTATAAAATGGAGACGAAAAGTCTAGCAGCCGATTATTTAGCGCTTTGCAAGTCGAAATTAAGCTTATTTGTTGCTTCAACAGGTAGTTCTTCGTCTTTTTTTCGTTTAAATAGACAGAAAATCTATTTCGAATTTTTGCATTTTTCAGCGACCTGCGGCTTCCTGATGGCTCCAGTACCCGTGGCAGCGGCTCCACTAGCTGCAGCGACGATTGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>498 214 189 99</canonical_bands>
                <polymorphic_bands>712 189 99</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>225 206 81 76 72 53 53 41 34 31 30 22 21 17 12 12 9 5</canonical_bands>
                <polymorphic_bands>225 206 81 76 72 58 53 41 34 31 30 22 21 17 12 12 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCACATTTTTCAGTGTTCTA</pcr_primer_p1>
		<pcr_primer_p2>CTTATGTCGTTTTCCAGATGATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGCACATTTTTCAGTGTTCTAGGCTCGGCTTTGCTCCTTCAACGAGTCAAGCCGTTTTTCATACTTCCACAGTGAATTCTGTGCTTCCTAGGGTAAAAAATTGTGGTTTTGAAGGATAAAACGCTCTAATTTTTCAGGCAAAACCGCTAGACGAGGAAATGCCGGCGCCCGCTGCTTTGAAGACTTTGGAATCCAAAAAATCTCGCCCGGATTTTCAAATTTTGGATTTATCATCTGGAAAACGACATAAG</canonical_amplicon>
		<polymorphic_amplicon>GGCACATTTTTCAGTGTTCTAGGCTCGGCTTTGCTCCTTCAACGAGTCAAGCCGTTTTTCATACTTCCWCAGTGAATTCTGTGCTTCCTAGGGTAAAAAATTGTGGTTTTGAAGGATAAAACGCTCTAATTTTTCAGGCAAAACCGCTAGACGAGGAAATGCCGGCGCCCGCTGCTTTGAAGACTTTGGAATCCAAAAAATCTCGCCCGGATTTTCAAATTTTGGATTTATCATCTGGAAAACGACATAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15580</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>24529</contig_pos>
        <strand>+</strand>
        <context>TTTTTCAGGC[A/G]AAACCGCTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGGTAAAAAATTGTGGTTTTGAAGGATAAAACGCTCTAATTTTTCAGGC</left_flank>
        <right_flank>AAACCGCTAGACGAGGAAATGCCGGCGCCCGCTGCTTTGAAGACTTTGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAAAATGCTTTTTGAGCGATGAAACTGTTGTTTAGAGCGAAAATACGTGTTTTTTCTCAACAAAATTTAGGCTTTCTTAAGTGTTGAGCTGGGAAAAGCACTAAAAATGACTTAAAATACCTGAAAATCACCTAAAAATTCCAAATTCAAAAAACCAAATTCAAACTACCGCCAACAACGACACTCCGAAATCCCGCTTGCGCGCGTTGTTTACCGTAAATCCATACTGGTTTTGCAGCTGTCGCCCGAGCCAAATGCACTGAAATCATTCTTTCTAGCTCATTTTTCTTGGATTTTGACCAAAAAATCAAGGAAACCAAATTTTCAGACACTTCGGGTCCCCGCAAAATGCTCAGTCGGCACATTTTTCAGTGTTCTAGGCTCGGCTTTGCTCCTTCAACGAGTCAAGCCGTTTTTCATACTTCCACAGTGAATTCTGTGCTTCCTAGGGTAAAAAATTGTGGTTTTGAAGGATAAAACGCTCTAATTTTTCAGGCAAAACCGCTAGACGAGGAAATGCCGGCGCCCGCTGCTTTGAAGACTTTGGAATCCAAAAAATCTCGCCCGGATTTTCAAATTTTGGATTTATCATCTGGAAAACGACATAAGAAGGATATTGATATCATCGGTATGATAAACATCTGTTTTTTAATGATTTTTAGGCCAAAAATTTAATTTCTTCCAGTCACCGATCAGTACCTCCAACAATGGTATAAAATGGAGACGAAAAGTCTAGCAGCCGATTATTTAGCGCTTTGCAAGTCGAAATTAAGCTTATTTGTTGCTTCAACAGGTAGTTCTTCGTCTTTTTTTCGTTTAAATAGACAGAAAATCTATTTCGAATTTTTGCATTTTTCAGCGACCTGCGGCTTCCTGATGGCTCCAGTACCCGTGGCAGCGGCTCCACTAGCTGCAGCGACGATTGGTGAGCTAAAAACGGCGAGGAAACTGATAAGCTCAAAATTTCAGGCACATTTCTCCTCTCATCGGCTGCCAAC</canonical>
            <polymorphic>ATAAAAATGCTTTTTGAGCGATGAAACTGTTGTTTAGAGCGAAAATACGTGTTTTTTCTCAACAAAATTTAGGCTTTCTTAAGTGTTGAGCTGGGAAAAGCACTAAAAATGACTTAAAATACCTGAAAATCACCTAAAAATTCCAAATTCAAAAAACCAAATTCAAACTACCGCCAACAACGACACTCCGAAATCCCGCTTGCGCGCGTTGTTTACCGTAAATCCATACTGGTTTTGCAGCTGTCGCCCGAGCCAAATGCACTGAAATCATTCTTTCTAGCTCATTTTTCTTGGATTTTGACCAAAAAATCAAGGAAACCAAATTTTCAGACACTTCGGGTCCCCGCAAAATGCTCAGTCGGCACATTTTTCAGTGTTCTAGGCTCGGCTTTGCTCCTTCAACGAGTCAAGCCGTTTTTCATACTTCCACAGTGAATTCTGTGCTTCCTAGGGTAAAAAATTGTGGTTTTGAAGGATAAAACGCTCTAATTTTTCAGGCRAAACCGCTAGACGAGGAAATGCCGGCGCCCGCTGCTTTGAAGACTTTGGAATCCAAAAAATCTCGCCCGGATTTTCAAATTTTGGATTTATCATCTGGAAAACGACATAAGAAGGATATTGATATCATCGGTATGATAAACATCTGTTTTTTAATGATTTTTAGGCCAAAAATTTAATTTCTTCCAGTCACCGATCAGTACCTCCAACAATGGTATAAAATGGAGACGAAAAGTCTAGCAGCCGATTATTTAGCGCTTTGCAAGTCGAAATTAAGCTTATTTGTTGCTTCAACAGGTAGTTCTTCGTCTTTTTTTCGTTTAAATAGACAGAAAATCTATTTCGAATTTTTGCATTTTTCAGCGACCTGCGGCTTCCTGATGGCTCCAGTACCCGTGGCAGCGGCTCCACTAGCTGCAGCGACGATTGGTGAGCTAAAAACGGCGAGGAAACTGATAAGCTCAAAATTTCAGGCACATTTCTCCTCTCATCGGCTGCCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCACATTTTTCAGTGTTCTA</pcr_primer_p1>
		<pcr_primer_p2>CTTATGTCGTTTTCCAGATGATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGCACATTTTTCAGTGTTCTAGGCTCGGCTTTGCTCCTTCAACGAGTCAAGCCGTTTTTCATACTTCCACAGTGAATTCTGTGCTTCCTAGGGTAAAAAATTGTGGTTTTGAAGGATAAAACGCTCTAATTTTTCAGGCAAAACCGCTAGACGAGGAAATGCCGGCGCCCGCTGCTTTGAAGACTTTGGAATCCAAAAAATCTCGCCCGGATTTTCAAATTTTGGATTTATCATCTGGAAAACGACATAAG</canonical_amplicon>
		<polymorphic_amplicon>GGCACATTTTTCAGTGTTCTAGGCTCGGCTTTGCTCCTTCAACGAGTCAAGCCGTTTTTCATACTTCCACAGTGAATTCTGTGCTTCCTAGGGTAAAAAATTGTGGTTTTGAAGGATAAAACGCTCTAATTTTTCAGGCRAAACCGCTAGACGAGGAAATGCCGGCGCCCGCTGCTTTGAAGACTTTGGAATCCAAAAAATCTCGCCCGGATTTTCAAATTTTGGATTTATCATCTGGAAAACGACATAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15581</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>24567</contig_pos>
        <strand>+</strand>
        <context>CCCGCTGCTT[C/T]GAAGACTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTTTCAGGCAAAACCGCTAGACGAGGAAATGCCGGCGCCCGCTGCTT</left_flank>
        <right_flank>GAAGACTTTGGAATCCAAAAAATCTCGCCCGGATTTTCAAATTTTGGATT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGAAAATACGTGTTTTTTCTCAACAAAATTTAGGCTTTCTTAAGTGTTGAGCTGGGAAAAGCACTAAAAATGACTTAAAATACCTGAAAATCACCTAAAAATTCCAAATTCAAAAAACCAAATTCAAACTACCGCCAACAACGACACTCCGAAATCCCGCTTGCGCGCGTTGTTTACCGTAAATCCATACTGGTTTTGCAGCTGTCGCCCGAGCCAAATGCACTGAAATCATTCTTTCTAGCTCATTTTTCTTGGATTTTGACCAAAAAATCAAGGAAACCAAATTTTCAGACACTTCGGGTCCCCGCAAAATGCTCAGTCGGCACATTTTTCAGTGTTCTAGGCTCGGCTTTGCTCCTTCAACGAGTCAAGCCGTTTTTCATACTTCCACAGTGAATTCTGTGCTTCCTAGGGTAAAAAATTGTGGTTTTGAAGGATAAAACGCTCTAATTTTTCAGGCAAAACCGCTAGACGAGGAAATGCCGGCGCCCGCTGCTTTGAAGACTTTGGAATCCAAAAAATCTCGCCCGGATTTTCAAATTTTGGATTTATCATCTGGAAAACGACATAAGAAGGATATTGATATCATCGGTATGATAAACATCTGTTTTTTAATGATTTTTAGGCCAAAAATTTAATTTCTTCCAGTCACCGATCAGTACCTCCAACAATGGTATAAAATGGAGACGAAAAGTCTAGCAGCCGATTATTTAGCGCTTTGCAAGTCGAAATTAAGCTTATTTGTTGCTTCAACAGGTAGTTCTTCGTCTTTTTTTCGTTTAAATAGACAGAAAATCTATTTCGAATTTTTGCATTTTTCAGCGACCTGCGGCTTCCTGATGGCTCCAGTACCCGTGGCAGCGGCTCCACTAGCTGCAGCGACGATTGGTGAGCTAAAAACGGCGAGGAAACTGATAAGCTCAAAATTTCAGGCACATTTCTCCTCTCATCGGCTGCCAACTCGTGTAATCAGCTTCTGGAGGCACCGTACGACGCCCA</canonical>
            <polymorphic>GCGAAAATACGTGTTTTTTCTCAACAAAATTTAGGCTTTCTTAAGTGTTGAGCTGGGAAAAGCACTAAAAATGACTTAAAATACCTGAAAATCACCTAAAAATTCCAAATTCAAAAAACCAAATTCAAACTACCGCCAACAACGACACTCCGAAATCCCGCTTGCGCGCGTTGTTTACCGTAAATCCATACTGGTTTTGCAGCTGTCGCCCGAGCCAAATGCACTGAAATCATTCTTTCTAGCTCATTTTTCTTGGATTTTGACCAAAAAATCAAGGAAACCAAATTTTCAGACACTTCGGGTCCCCGCAAAATGCTCAGTCGGCACATTTTTCAGTGTTCTAGGCTCGGCTTTGCTCCTTCAACGAGTCAAGCCGTTTTTCATACTTCCACAGTGAATTCTGTGCTTCCTAGGGTAAAAAATTGTGGTTTTGAAGGATAAAACGCTCTAATTTTTCAGGCAAAACCGCTAGACGAGGAAATGCCGGCGCCCGCTGCTTYGAAGACTTTGGAATCCAAAAAATCTCGCCCGGATTTTCAAATTTTGGATTTATCATCTGGAAAACGACATAAGAAGGATATTGATATCATCGGTATGATAAACATCTGTTTTTTAATGATTTTTAGGCCAAAAATTTAATTTCTTCCAGTCACCGATCAGTACCTCCAACAATGGTATAAAATGGAGACGAAAAGTCTAGCAGCCGATTATTTAGCGCTTTGCAAGTCGAAATTAAGCTTATTTGTTGCTTCAACAGGTAGTTCTTCGTCTTTTTTTCGTTTAAATAGACAGAAAATCTATTTCGAATTTTTGCATTTTTCAGCGACCTGCGGCTTCCTGATGGCTCCAGTACCCGTGGCAGCGGCTCCACTAGCTGCAGCGACGATTGGTGAGCTAAAAACGGCGAGGAAACTGATAAGCTCAAAATTTCAGGCACATTTCTCCTCTCATCGGCTGCCAACTCGTGTAATCAGCTTCTGGAGGCACCGTACGACGCCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGGATAAAACGCTCTAATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTATACCATTGTTGGAGGTACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAGGATAAAACGCTCTAATTTTTCAGGCAAAACCGCTAGACGAGGAAATGCCGGCGCCCGCTGCTTTGAAGACTTTGGAATCCAAAAAATCTCGCCCGGATTTTCAAATTTTGGATTTATCATCTGGAAAACGACATAAGAAGGATATTGATATCATCGGTATGATAAACATCTGTTTTTTAATGATTTTTAGGCCAAAAATTTAATTTCTTCCAGTCACCGATCAGTACCTCCAACAATGGTATAAA</canonical_amplicon>
		<polymorphic_amplicon>GAAGGATAAAACGCTCTAATTTTTCAGGCAAAACCGCTAGACGAGGAAATGCCGGCGCCCGCTGCTTYGAAGACTTTGGAATCCAAAAAATCTCGCCCGGATTTTCAAATTTTGGATTTATCATCTGGAAAACGACATAAGAAGGATATTGATATCATCGGTATGATAAACATCTGTTTTTTAATGATTTTTAGGCCAAAAATTTAATTTCTTCCAGTCACCGATCAGTACCTCCAACAATGGTATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15583</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>153573</contig_pos>
        <strand>+</strand>
        <context>AACCCATTTG[A/G]ATTTCAAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATTTCTTGGCTTCCTGAAAGCTTGTATACCGTAACATAACCCATTTG</left_flank>
        <right_flank>ATTTCAAAGACGTTATCTACAAGCTAATCCTCTGAATAAGGTAAAAAGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATATTCTTGTCTAAAAATAGGAATATCTATCTATTCCAGACCATCTAAAACCAGCGACCACTACTCCAAAGCATCATATGTCTTCTAAACGTCTGCTATCCAATATGTTAACTTTGACACCAATTATCAATGTTACTGTAGCATATATCAAAAAATTGTCAACTAATAAAATATTTCTTACAATTCAAAAAAATATTTTGCTAGTTATCAACTTTTTGATATTTCTTCTGGCTAACGAGATAATTCAGTTAACAGTAGTGCTTTGCCTTAAAAAGCGTTCCTTTGTCCAAGCTCGATTTTCTCAATTCCTTTGAAAGATACAAAAAAGTTGTCAACTAACAAAATATCGATCACAAGCCAACAAACATTTTGTTAGTTGTCAACTTTTTGATAGCTATCATAGAAACTGAGATAATAGAGGTCAAACCGCGTGAAATTCAAAATTTAAAATTTCTTGGCTTCCTGAAAGCTTGTATACCGTAACATAACCCATTTGGATTTCAAAGACGTTATCTACAAGCTAATCCTCTGAATAAGGTAAAAAGAGACACTAGATCTCGACACTGATACAATTCGTGTCGTCGGGGCTATTTGAAAAGCGTGTCTGTATCTGTATTTTAATCTGAAAAGAGAGGAATTTTTGTTTCTGAATGTTTGATCGATACATCAGTTCCAACGCATAGGTCAGAAGTGAAGGCATTTTTGGTCACTTAAAAGGCCAAGGAATGGACACAATGCCTTTAGCAAACCTAAGACATTTATTATGCTAATTGAAGTTCTACTATCGTAAAACCTGTGACCCAACACAAAAATAAGCTTTTAATTTTGAACCTATTTATTTCAGTTCTGGTAAAATTTTTCAAAAATCTGTCAATTGATAAAATGTTATTGATATTATGATAAACATTTTGTCAGTTGACCACTTTTTAATATCTTCCACAGGAAGCGAGATAAATTGGATCAAAGTTCTGGCGACTTCTCTACATGCAACCGATTT</canonical>
            <polymorphic>TTTATATTCTTGTCTAAAAATAGGAATATCTATCTATTCCAGACCATCTAAAACCAGCGACCACTACTCCAAAGCATCATATGTCTTCTAAACGTCTGCTATCCAATATGTTAACTTTGACACCAATTATCAATGTTACTGTAGCATATATCAAAAAATTGTCAACTAATAAAATATTTCTTACAATTCAAAAAAATATTTTGCTAGTTATCAACTTTTTGATATTTCTTCTGGCTAACGAGATAATTCAGTTAACAGTAGTGCTTTGCCTTAAAAAGCGTTCCTTTGTCCAAGCTCGATTTTCTCAATTCCTTTGAAAGATACAAAAAAGTTGTCAACTAACAAAATATCGATCACAAGCCAACAAACATTTTGTTAGTTGTCAACTTTTTGATAGCTATCATAGAAACTGAGATAATAGAGGTCAAACCGCGTGAAATTCAAAATTTAAAATTTCTTGGCTTCCTGAAAGCTTGTATACCGTAACATAACCCATTTGRATTTCAAAGACGTTATCTACAAGCTAATCCTCTGAATAAGGTAAAAAGAGACACTAGATCTCGACACTGATACAATTCGTGTCGTCGGGGCTATTTGAAAAGCGTGTCTGTATCTGTATTTTAATCTGAAAAGAGAGGAATTTTTGTTTCTGAATGTTTGATCGATACATCAGTTCCAACGCATAGGTCAGAAGTGAAGGCATTTTTGGTCACTTAAAAGGCCAAGGAATGGACACAATGCCTTTAGCAAACCTAAGACATTTATTATGCTAATTGAAGTTCTACTATCGTAAAACCTGTGACCCAACACAAAAATAAGCTTTTAATTTTGAACCTATTTATTTCAGTTCTGGTAAAATTTTTCAAAAATCTGTCAATTGATAAAATGTTATTGATATTATGATAAACATTTTGTCAGTTGACCACTTTTTAATATCTTCCACAGGAAGCGAGATAAATTGGATCAAAGTTCTGGCGACTTCTCTACATGCAACCGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTAAACGTCTGCTATCCAATA</pcr_primer_p1>
		<pcr_primer_p2>TCTAGTGTCTCTTTTTACCTTATTCA</pcr_primer_p2>
		<pcr_amplicon_size>473</pcr_amplicon_size>
		<canonical_amplicon>TTCTAAACGTCTGCTATCCAATATGTTAACTTTGACACCAATTATCAATGTTACTGTAGCATATATCAAAAAATTGTCAACTAATAAAATATTTCTTACAATTCAAAAAAATATTTTGCTAGTTATCAACTTTTTGATATTTCTTCTGGCTAACGAGATAATTCAGTTAACAGTAGTGCTTTGCCTTAAAAAGCGTTCCTTTGTCCAAGCTCGATTTTCTCAATTCCTTTGAAAGATACAAAAAAGTTGTCAACTAACAAAATATCGATCACAAGCCAACAAACATTTTGTTAGTTGTCAACTTTTTGATAGCTATCATAGAAACTGAGATAATAGAGGTCAAACCGCGTGAAATTCAAAATTTAAAATTTCTTGGCTTCCTGAAAGCTTGTATACCGTAACATAACCCATTTGGATTTCAAAGACGTTATCTACAAGCTAATCCTCTGAATAAGGTAAAAAGAGACACTAGA</canonical_amplicon>
		<polymorphic_amplicon>TTCTAAACGTCTGCTATCCAATATGTTAACTTTGACACCAATTATCAATGTTACTGTAGCATATATCAAAAAATTGTCAACTAATAAAATATTTCTTACAATTCAAAAAAATATTTTGCTAGTTATCAACTTTTTGATATTTCTTCTGGCTAACGAGATAATTCAGTTAACAGTAGTGCTTTGCCTTAAAAAGCGTTCCTTTGTCCAAGCTCGATTTTCTCAATTCCTTTGAAAGATACAAAAAAGTTGTCAACTAACAAAATATCGATCACAAGCCAACAAACATTTTGTTAGTTGTCAACTTTTTGATAGCTATCATAGAAACTGAGATAATAGAGGTCAAACCGCGTGAAATTCAAAATTTAAAATTTCTTGGCTTCCTGAAAGCTTGTATACCGTAACATAACCCATTTGRATTTCAAAGACGTTATCTACAAGCTAATCCTCTGAATAAGGTAAAAAGAGACACTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15584</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>153516</contig_pos>
        <strand>+</strand>
        <context>CGTGAAATTC[A/C]AAATTTAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATAGCTATCATAGAAACTGAGATAATAGAGGTCAAACCGCGTGAAATTC</left_flank>
        <right_flank>AAATTTAAAATTTCTTGGCTTCCTGAAAGCTTGTATACCGTAACATAACC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAACTTGGCGGAGTAATGGAAATAGGAAGTGTAAAAAGTTCTACGGAAATTTATCTTTATATTCTTGTCTAAAAATAGGAATATCTATCTATTCCAGACCATCTAAAACCAGCGACCACTACTCCAAAGCATCATATGTCTTCTAAACGTCTGCTATCCAATATGTTAACTTTGACACCAATTATCAATGTTACTGTAGCATATATCAAAAAATTGTCAACTAATAAAATATTTCTTACAATTCAAAAAAATATTTTGCTAGTTATCAACTTTTTGATATTTCTTCTGGCTAACGAGATAATTCAGTTAACAGTAGTGCTTTGCCTTAAAAAGCGTTCCTTTGTCCAAGCTCGATTTTCTCAATTCCTTTGAAAGATACAAAAAAGTTGTCAACTAACAAAATATCGATCACAAGCCAACAAACATTTTGTTAGTTGTCAACTTTTTGATAGCTATCATAGAAACTGAGATAATAGAGGTCAAACCGCGTGAAATTCAAAATTTAAAATTTCTTGGCTTCCTGAAAGCTTGTATACCGTAACATAACCCATTTGGATTTCAAAGACGTTATCTACAAGCTAATCCTCTGAATAAGGTAAAAAGAGACACTAGATCTCGACACTGATACAATTCGTGTCGTCGGGGCTATTTGAAAAGCGTGTCTGTATCTGTATTTTAATCTGAAAAGAGAGGAATTTTTGTTTCTGAATGTTTGATCGATACATCAGTTCCAACGCATAGGTCAGAAGTGAAGGCATTTTTGGTCACTTAAAAGGCCAAGGAATGGACACAATGCCTTTAGCAAACCTAAGACATTTATTATGCTAATTGAAGTTCTACTATCGTAAAACCTGTGACCCAACACAAAAATAAGCTTTTAATTTTGAACCTATTTATTTCAGTTCTGGTAAAATTTTTCAAAAATCTGTCAATTGATAAAATGTTATTGATATTATGATAAACATTTTGTCAGTTGACCACTTTTTAATATCTTCCAC</canonical>
            <polymorphic>GGAAACTTGGCGGAGTAATGGAAATAGGAAGTGTAAAAAGTTCTACGGAAATTTATCTTTATATTCTTGTCTAAAAATAGGAATATCTATCTATTCCAGACCATCTAAAACCAGCGACCACTACTCCAAAGCATCATATGTCTTCTAAACGTCTGCTATCCAATATGTTAACTTTGACACCAATTATCAATGTTACTGTAGCATATATCAAAAAATTGTCAACTAATAAAATATTTCTTACAATTCAAAAAAATATTTTGCTAGTTATCAACTTTTTGATATTTCTTCTGGCTAACGAGATAATTCAGTTAACAGTAGTGCTTTGCCTTAAAAAGCGTTCCTTTGTCCAAGCTCGATTTTCTCAATTCCTTTGAAAGATACAAAAAAGTTGTCAACTAACAAAATATCGATCACAAGCCAACAAACATTTTGTTAGTTGTCAACTTTTTGATAGCTATCATAGAAACTGAGATAATAGAGGTCAAACCGCGTGAAATTCMAAATTTAAAATTTCTTGGCTTCCTGAAAGCTTGTATACCGTAACATAACCCATTTGGATTTCAAAGACGTTATCTACAAGCTAATCCTCTGAATAAGGTAAAAAGAGACACTAGATCTCGACACTGATACAATTCGTGTCGTCGGGGCTATTTGAAAAGCGTGTCTGTATCTGTATTTTAATCTGAAAAGAGAGGAATTTTTGTTTCTGAATGTTTGATCGATACATCAGTTCCAACGCATAGGTCAGAAGTGAAGGCATTTTTGGTCACTTAAAAGGCCAAGGAATGGACACAATGCCTTTAGCAAACCTAAGACATTTATTATGCTAATTGAAGTTCTACTATCGTAAAACCTGTGACCCAACACAAAAATAAGCTTTTAATTTTGAACCTATTTATTTCAGTTCTGGTAAAATTTTTCAAAAATCTGTCAATTGATAAAATGTTATTGATATTATGATAAACATTTTGTCAGTTGACCACTTTTTAATATCTTCCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTAAACGTCTGCTATCCAATA</pcr_primer_p1>
		<pcr_primer_p2>CAAATGGGTTATGTTACGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>414</pcr_amplicon_size>
		<canonical_amplicon>TTCTAAACGTCTGCTATCCAATATGTTAACTTTGACACCAATTATCAATGTTACTGTAGCATATATCAAAAAATTGTCAACTAATAAAATATTTCTTACAATTCAAAAAAATATTTTGCTAGTTATCAACTTTTTGATATTTCTTCTGGCTAACGAGATAATTCAGTTAACAGTAGTGCTTTGCCTTAAAAAGCGTTCCTTTGTCCAAGCTCGATTTTCTCAATTCCTTTGAAAGATACAAAAAAGTTGTCAACTAACAAAATATCGATCACAAGCCAACAAACATTTTGTTAGTTGTCAACTTTTTGATAGCTATCATAGAAACTGAGATAATAGAGGTCAAACCGCGTGAAATTCAAAATTTAAAATTTCTTGGCTTCCTGAAAGCTTGTATACCGTAACATAACCCATTTG</canonical_amplicon>
		<polymorphic_amplicon>TTCTAAACGTCTGCTATCCAATATGTTAACTTTGACACCAATTATCAATGTTACTGTAGCATATATCAAAAAATTGTCAACTAATAAAATATTTCTTACAATTCAAAAAAATATTTTGCTAGTTATCAACTTTTTGATATTTCTTCTGGCTAACGAGATAATTCAGTTAACAGTAGTGCTTTGCCTTAAAAAGCGTTCCTTTGTCCAAGCTCGATTTTCTCAATTCCTTTGAAAGATACAAAAAAGTTGTCAACTAACAAAATATCGATCACAAGCCAACAAACATTTTGTTAGTTGTCAACTTTTTGATAGCTATCATAGAAACTGAGATAATAGAGGTCAAACCGCGTGAAATTCMAAATTTAAAATTTCTTGGCTTCCTGAAAGCTTGTATACCGTAACATAACCCATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15585</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>312916</contig_pos>
        <strand>+</strand>
        <context>GAAATGAAAA[G/T]YAAAAYATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTAAAATTTGGAATTTAGAAATCGGAGTTTGAAAATCGGGAAATGAAAA</left_flank>
        <right_flank>TAAAATATTCAAAATTAGATTCCAGACATTCCAATTTTCAAATTCAGACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTATGGGAACTTTGTGTAAACTAGACTGTAGTGAATTGTGAATTTTTAATATAAAATTATAAGCTTTTTTGATTCGTACTAAAATCAAAACAATCAATCAAAATCACCAGCAAAAACAAATTAACACATTTATAACTAACCTGAAACGCAAAAGTGTGAAACATTTTGACAATTTTGCATAGAGCATCTCCTCCTCTCCAATCATATGTGAGTAGCCAACAAGCACGTGATGGTACATAAATGAACAAAACGAGGAGGTCCGAGTAGTTCAACGATCGTTTCAAAAGATCCAGACGAGTGGAAGTGGGACGTTCGCTGAGCTGAAAATGTTTTCTAATGTTACTATTTTTAAGATAGTGTCTAACCTGTAAGATAGTGTCTGTGGTAAGGAAACTCAAATTTGTTTTTGTAATACTGGCTAGATAGTCTTCCAATGCGAATTCTGAGTTTTAAAATTTGGAATTTAGAAATCGGAGTTTGAAAATCGGGAAATGAAAATTAAAATATTCAAAATTAGATTCCAGACATTCCAATTTTCAAATTCAGACTTTCAATTTCGATATTGTTTCCGATTTTTGATTTTCTGGCTTTCAGATTTTCCTATTTTCAGGTTTTCATCATGGAATTCATAATTTTGAGTTTTTACTTTTAAAAAAATCACAGTTTCAAAAAGTTGATCACATCTTCTGCATTATTTTAAAAAATTAGTATCATTTCAGTTCTGATTGATCCATTTATCCCTTTCTCATTAGAGCGCAATTGTCGAAATTGAATTTGAAAAAAAATCTCCGTTTCGAAAACTTTTCAAAAAATTTTCGGATTATTTTGAATGGCTAGTTAACTTCGATTCGATCTAACTTCGATCTAACTTCGATTTCTTATTAGAGCGCGTTTCTTGGCGGAATTCAAAACGTTGAACTTTTTTTCAAAAAAAATCCAGTTTCAAAAACTTGATGAAATCTTCTGGATTATTTTGACTACTAATGTTCTTTCTATTTC</canonical>
            <polymorphic>TCTATGGGAACTTTGTGTAAACTAGACTGTAGTGAATTGTGAATTTTTAATATAAAATTATAAGCTTTTTTGATTCGTACTAAAATCAAAACAATCAATCAAAATCACCAGCAAAAACAAATTAACACATTTATAACTAACCTGAAACGCAAAAGTGTGAAACATTTTGACAATTTTGCATAGAGCATCTCCTCCTCTCCAATCATATGTGAGTAGCCAACAAGCACGTGATGGTACATAAATGAACAAAACGAGGAGGTCCGAGTAGTTCAACGATCGTTTCAAAAGATCCAGACGAGTGGAAGTGGGACGTTCGCTGAGCTGAAAATGTTTTCTAATGTTACTATTTTTAAGATAGTGTCTAACCTGTAAGATAGTGTCTGTGGTAAGGAAACTCAAATTTGTTTTTGTAATACTGGCTAGATAGTCTTCCAATGCGAATTCTGAGTTTTAAAATTTGGAATTTAGAAATCGGAGTTTGAAAATCGGGAAATGAAAAKTAAAATATTCAAAATTAGATTCCAGACATTCCAATTTTCAAATTCAGACTTTCAATTTCGATATTGTTTCCGATTTTTGATTTTCTGGCTTTCAGATTTTCCTATTTTCAGGTTTTCATCATGGAATTCATAATTTTGAGTTTTTACTTTTAAAAAAATCACAGTTTCAAAAAGTTGATCACATCTTCTGCATTATTTTAAAAAATTAGTATCATTTCAGTTCTGATTGATCCATTTATCCCTTTCTCATTAGAGCGCAATTGTCGAAATTGAATTTGAAAAAAAATCTCCGTTTCGAAAACTTTTCAAAAAATTTTCGGATTATTTTGAATGGCTAGTTAACTTCGATTCGATCTAACTTCGATCTAACTTCGATTTCTTATTAGAGCGCGTTTCTTGGCGGAATTCAAAACGTTGAACTTTTTTTCAAAAAAAATCCAGTTTCAAAAACTTGATGAAATCTTCTGGATTATTTTGACTACTAATGTTCTTTCTATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>228 161 150 141 101 75 49 48 47</canonical_bands>
                <polymorphic_bands>228 199 161 141 101 75 48 47</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>227 97 92 72 71 64 55 52 41 39 36 34 20 15 15 14 13 9 8 7 7 7 5</canonical_bands>
                <polymorphic_bands>227 97 92 72 71 64 55 52 51 41 39 34 20 15 14 13 9 8 7 7 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTAAGATAGTGTCTGTGGTAAGG</pcr_primer_p1>
		<pcr_primer_p2>GAAAACCTGAAAATAGGAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTAAGATAGTGTCTGTGGTAAGGAAACTCAAATTTGTTTTTGTAATACTGGCTAGATAGTCTTCCAATGCGAATTCTGAGTTTTAAAATTTGGAATTTAGAAATCGGAGTTTGAAAATCGGGAAATGAAAATTAAAATATTCAAAATTAGATTCCAGACATTCCAATTTTCAAATTCAGACTTTCAATTTCGATATTGTTTCCGATTTTTGATTTTCTGGCTTTCAGATTTTCCTATTTTCAGGTTTTC</canonical_amplicon>
		<polymorphic_amplicon>TGTAAGATAGTGTCTGTGGTAAGGAAACTCAAATTTGTTTTTGTAATACTGGCTAGATAGTCTTCCAATGCGAATTCTGAGTTTTAAAATTTGGAATTTAGAAATCGGAGTTTGAAAATCGGGAAATGAAAAKTAAAATATTCAAAATTAGATTCCAGACATTCCAATTTTCAAATTCAGACTTTCAATTTCGATATTGTTTCCGATTTTTGATTTTCTGGCTTTCAGATTTTCCTATTTTCAGGTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15586</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>312917</contig_pos>
        <strand>+</strand>
        <context>AAATGAAAAK[C/T]AAAAYATTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAAATTTGGAATTTAGAAATCGGAGTTTGAAAATCGGGAAATGAAAAT</left_flank>
        <right_flank>AAAATATTCAAAATTAGATTCCAGACATTCCAATTTTCAAATTCAGACTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATGGGAACTTTGTGTAAACTAGACTGTAGTGAATTGTGAATTTTTAATATAAAATTATAAGCTTTTTTGATTCGTACTAAAATCAAAACAATCAATCAAAATCACCAGCAAAAACAAATTAACACATTTATAACTAACCTGAAACGCAAAAGTGTGAAACATTTTGACAATTTTGCATAGAGCATCTCCTCCTCTCCAATCATATGTGAGTAGCCAACAAGCACGTGATGGTACATAAATGAACAAAACGAGGAGGTCCGAGTAGTTCAACGATCGTTTCAAAAGATCCAGACGAGTGGAAGTGGGACGTTCGCTGAGCTGAAAATGTTTTCTAATGTTACTATTTTTAAGATAGTGTCTAACCTGTAAGATAGTGTCTGTGGTAAGGAAACTCAAATTTGTTTTTGTAATACTGGCTAGATAGTCTTCCAATGCGAATTCTGAGTTTTAAAATTTGGAATTTAGAAATCGGAGTTTGAAAATCGGGAAATGAAAATTAAAATATTCAAAATTAGATTCCAGACATTCCAATTTTCAAATTCAGACTTTCAATTTCGATATTGTTTCCGATTTTTGATTTTCTGGCTTTCAGATTTTCCTATTTTCAGGTTTTCATCATGGAATTCATAATTTTGAGTTTTTACTTTTAAAAAAATCACAGTTTCAAAAAGTTGATCACATCTTCTGCATTATTTTAAAAAATTAGTATCATTTCAGTTCTGATTGATCCATTTATCCCTTTCTCATTAGAGCGCAATTGTCGAAATTGAATTTGAAAAAAAATCTCCGTTTCGAAAACTTTTCAAAAAATTTTCGGATTATTTTGAATGGCTAGTTAACTTCGATTCGATCTAACTTCGATCTAACTTCGATTTCTTATTAGAGCGCGTTTCTTGGCGGAATTCAAAACGTTGAACTTTTTTTCAAAAAAAATCCAGTTTCAAAAACTTGATGAAATCTTCTGGATTATTTTGACTACTAATGTTCTTTCTATTTCT</canonical>
            <polymorphic>CTATGGGAACTTTGTGTAAACTAGACTGTAGTGAATTGTGAATTTTTAATATAAAATTATAAGCTTTTTTGATTCGTACTAAAATCAAAACAATCAATCAAAATCACCAGCAAAAACAAATTAACACATTTATAACTAACCTGAAACGCAAAAGTGTGAAACATTTTGACAATTTTGCATAGAGCATCTCCTCCTCTCCAATCATATGTGAGTAGCCAACAAGCACGTGATGGTACATAAATGAACAAAACGAGGAGGTCCGAGTAGTTCAACGATCGTTTCAAAAGATCCAGACGAGTGGAAGTGGGACGTTCGCTGAGCTGAAAATGTTTTCTAATGTTACTATTTTTAAGATAGTGTCTAACCTGTAAGATAGTGTCTGTGGTAAGGAAACTCAAATTTGTTTTTGTAATACTGGCTAGATAGTCTTCCAATGCGAATTCTGAGTTTTAAAATTTGGAATTTAGAAATCGGAGTTTGAAAATCGGGAAATGAAAATYAAAATATTCAAAATTAGATTCCAGACATTCCAATTTTCAAATTCAGACTTTCAATTTCGATATTGTTTCCGATTTTTGATTTTCTGGCTTTCAGATTTTCCTATTTTCAGGTTTTCATCATGGAATTCATAATTTTGAGTTTTTACTTTTAAAAAAATCACAGTTTCAAAAAGTTGATCACATCTTCTGCATTATTTTAAAAAATTAGTATCATTTCAGTTCTGATTGATCCATTTATCCCTTTCTCATTAGAGCGCAATTGTCGAAATTGAATTTGAAAAAAAATCTCCGTTTCGAAAACTTTTCAAAAAATTTTCGGATTATTTTGAATGGCTAGTTAACTTCGATTCGATCTAACTTCGATCTAACTTCGATTTCTTATTAGAGCGCGTTTCTTGGCGGAATTCAAAACGTTGAACTTTTTTTCAAAAAAAATCCAGTTTCAAAAACTTGATGAAATCTTCTGGATTATTTTGACTACTAATGTTCTTTCTATTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>228 162 150 141 101 75 49 48 46</canonical_bands>
                <polymorphic_bands>228 199 162 141 101 75 48 46</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>227 98 92 72 71 64 55 52 41 39 36 33 20 15 15 14 13 9 8 7 7 7 5</canonical_bands>
                <polymorphic_bands>227 98 92 72 71 64 55 52 51 41 39 33 20 15 14 13 9 8 7 7 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTAAGATAGTGTCTGTGGTAAGG</pcr_primer_p1>
		<pcr_primer_p2>GAAAACCTGAAAATAGGAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTAAGATAGTGTCTGTGGTAAGGAAACTCAAATTTGTTTTTGTAATACTGGCTAGATAGTCTTCCAATGCGAATTCTGAGTTTTAAAATTTGGAATTTAGAAATCGGAGTTTGAAAATCGGGAAATGAAAATTAAAATATTCAAAATTAGATTCCAGACATTCCAATTTTCAAATTCAGACTTTCAATTTCGATATTGTTTCCGATTTTTGATTTTCTGGCTTTCAGATTTTCCTATTTTCAGGTTTTC</canonical_amplicon>
		<polymorphic_amplicon>TGTAAGATAGTGTCTGTGGTAAGGAAACTCAAATTTGTTTTTGTAATACTGGCTAGATAGTCTTCCAATGCGAATTCTGAGTTTTAAAATTTGGAATTTAGAAATCGGAGTTTGAAAATCGGGAAATGAAAATYAAAATATTCAAAATTAGATTCCAGACATTCCAATTTTCAAATTCAGACTTTCAATTTCGATATTGTTTCCGATTTTTGATTTTCTGGCTTTCAGATTTTCCTATTTTCAGGTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15587</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>312922</contig_pos>
        <strand>+</strand>
        <context>AAAAKYAAAA[C/T]ATTCAAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTGGAATTTAGAAATCGGAGTTTGAAAATCGGGAAATGAAAATTAAAA</left_flank>
        <right_flank>ATTCAAAATTAGATTCCAGACATTCCAATTTTCAAATTCAGACTTTCAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAACTTTGTGTAAACTAGACTGTAGTGAATTGTGAATTTTTAATATAAAATTATAAGCTTTTTTGATTCGTACTAAAATCAAAACAATCAATCAAAATCACCAGCAAAAACAAATTAACACATTTATAACTAACCTGAAACGCAAAAGTGTGAAACATTTTGACAATTTTGCATAGAGCATCTCCTCCTCTCCAATCATATGTGAGTAGCCAACAAGCACGTGATGGTACATAAATGAACAAAACGAGGAGGTCCGAGTAGTTCAACGATCGTTTCAAAAGATCCAGACGAGTGGAAGTGGGACGTTCGCTGAGCTGAAAATGTTTTCTAATGTTACTATTTTTAAGATAGTGTCTAACCTGTAAGATAGTGTCTGTGGTAAGGAAACTCAAATTTGTTTTTGTAATACTGGCTAGATAGTCTTCCAATGCGAATTCTGAGTTTTAAAATTTGGAATTTAGAAATCGGAGTTTGAAAATCGGGAAATGAAAATTAAAATATTCAAAATTAGATTCCAGACATTCCAATTTTCAAATTCAGACTTTCAATTTCGATATTGTTTCCGATTTTTGATTTTCTGGCTTTCAGATTTTCCTATTTTCAGGTTTTCATCATGGAATTCATAATTTTGAGTTTTTACTTTTAAAAAAATCACAGTTTCAAAAAGTTGATCACATCTTCTGCATTATTTTAAAAAATTAGTATCATTTCAGTTCTGATTGATCCATTTATCCCTTTCTCATTAGAGCGCAATTGTCGAAATTGAATTTGAAAAAAAATCTCCGTTTCGAAAACTTTTCAAAAAATTTTCGGATTATTTTGAATGGCTAGTTAACTTCGATTCGATCTAACTTCGATCTAACTTCGATTTCTTATTAGAGCGCGTTTCTTGGCGGAATTCAAAACGTTGAACTTTTTTTCAAAAAAAATCCAGTTTCAAAAACTTGATGAAATCTTCTGGATTATTTTGACTACTAATGTTCTTTCTATTTCTTCTTT</canonical>
            <polymorphic>GGAACTTTGTGTAAACTAGACTGTAGTGAATTGTGAATTTTTAATATAAAATTATAAGCTTTTTTGATTCGTACTAAAATCAAAACAATCAATCAAAATCACCAGCAAAAACAAATTAACACATTTATAACTAACCTGAAACGCAAAAGTGTGAAACATTTTGACAATTTTGCATAGAGCATCTCCTCCTCTCCAATCATATGTGAGTAGCCAACAAGCACGTGATGGTACATAAATGAACAAAACGAGGAGGTCCGAGTAGTTCAACGATCGTTTCAAAAGATCCAGACGAGTGGAAGTGGGACGTTCGCTGAGCTGAAAATGTTTTCTAATGTTACTATTTTTAAGATAGTGTCTAACCTGTAAGATAGTGTCTGTGGTAAGGAAACTCAAATTTGTTTTTGTAATACTGGCTAGATAGTCTTCCAATGCGAATTCTGAGTTTTAAAATTTGGAATTTAGAAATCGGAGTTTGAAAATCGGGAAATGAAAATTAAAAYATTCAAAATTAGATTCCAGACATTCCAATTTTCAAATTCAGACTTTCAATTTCGATATTGTTTCCGATTTTTGATTTTCTGGCTTTCAGATTTTCCTATTTTCAGGTTTTCATCATGGAATTCATAATTTTGAGTTTTTACTTTTAAAAAAATCACAGTTTCAAAAAGTTGATCACATCTTCTGCATTATTTTAAAAAATTAGTATCATTTCAGTTCTGATTGATCCATTTATCCCTTTCTCATTAGAGCGCAATTGTCGAAATTGAATTTGAAAAAAAATCTCCGTTTCGAAAACTTTTCAAAAAATTTTCGGATTATTTTGAATGGCTAGTTAACTTCGATTCGATCTAACTTCGATCTAACTTCGATTTCTTATTAGAGCGCGTTTCTTGGCGGAATTCAAAACGTTGAACTTTTTTTCAAAAAAAATCCAGTTTCAAAAACTTGATGAAATCTTCTGGATTATTTTGACTACTAATGTTCTTTCTATTTCTTCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTAAGATAGTGTCTGTGGTAAGG</pcr_primer_p1>
		<pcr_primer_p2>GAAAACCTGAAAATAGGAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTAAGATAGTGTCTGTGGTAAGGAAACTCAAATTTGTTTTTGTAATACTGGCTAGATAGTCTTCCAATGCGAATTCTGAGTTTTAAAATTTGGAATTTAGAAATCGGAGTTTGAAAATCGGGAAATGAAAATTAAAATATTCAAAATTAGATTCCAGACATTCCAATTTTCAAATTCAGACTTTCAATTTCGATATTGTTTCCGATTTTTGATTTTCTGGCTTTCAGATTTTCCTATTTTCAGGTTTTC</canonical_amplicon>
		<polymorphic_amplicon>TGTAAGATAGTGTCTGTGGTAAGGAAACTCAAATTTGTTTTTGTAATACTGGCTAGATAGTCTTCCAATGCGAATTCTGAGTTTTAAAATTTGGAATTTAGAAATCGGAGTTTGAAAATCGGGAAATGAAAATTAAAAYATTCAAAATTAGATTCCAGACATTCCAATTTTCAAATTCAGACTTTCAATTTCGATATTGTTTCCGATTTTTGATTTTCTGGCTTTCAGATTTTCCTATTTTCAGGTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15588</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>313078</contig_pos>
        <strand>+</strand>
        <context>AAAAAAATCA[A/C]AGTTTCAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTTTCATCATGGAATTCATAATTTTGAGTTTTTACTTTTAAAAAAATCA</left_flank>
        <right_flank>AGTTTCAAAAAGTTGATCACATCTTCTGCATTATTTTAAAAAATTAGTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTTGACAATTTTGCATAGAGCATCTCCTCCTCTCCAATCATATGTGAGTAGCCAACAAGCACGTGATGGTACATAAATGAACAAAACGAGGAGGTCCGAGTAGTTCAACGATCGTTTCAAAAGATCCAGACGAGTGGAAGTGGGACGTTCGCTGAGCTGAAAATGTTTTCTAATGTTACTATTTTTAAGATAGTGTCTAACCTGTAAGATAGTGTCTGTGGTAAGGAAACTCAAATTTGTTTTTGTAATACTGGCTAGATAGTCTTCCAATGCGAATTCTGAGTTTTAAAATTTGGAATTTAGAAATCGGAGTTTGAAAATCGGGAAATGAAAATTAAAATATTCAAAATTAGATTCCAGACATTCCAATTTTCAAATTCAGACTTTCAATTTCGATATTGTTTCCGATTTTTGATTTTCTGGCTTTCAGATTTTCCTATTTTCAGGTTTTCATCATGGAATTCATAATTTTGAGTTTTTACTTTTAAAAAAATCACAGTTTCAAAAAGTTGATCACATCTTCTGCATTATTTTAAAAAATTAGTATCATTTCAGTTCTGATTGATCCATTTATCCCTTTCTCATTAGAGCGCAATTGTCGAAATTGAATTTGAAAAAAAATCTCCGTTTCGAAAACTTTTCAAAAAATTTTCGGATTATTTTGAATGGCTAGTTAACTTCGATTCGATCTAACTTCGATCTAACTTCGATTTCTTATTAGAGCGCGTTTCTTGGCGGAATTCAAAACGTTGAACTTTTTTTCAAAAAAAATCCAGTTTCAAAAACTTGATGAAATCTTCTGGATTATTTTGACTACTAATGTTCTTTCTATTTCTTCTTTGAAGCACACCTGCCAAAAACTTGCATTTTTAAAAATTGATTTTAAAAAAGCACTGCCGTTTCAAAATATTGACTAAACTTTTCGGATTATTCTGTTACTGGAGTATCGATGAATTGAATACTTTTCATTAGAACGCGTTTTTTGGAAGAAGTCGAA</canonical>
            <polymorphic>CATTTTGACAATTTTGCATAGAGCATCTCCTCCTCTCCAATCATATGTGAGTAGCCAACAAGCACGTGATGGTACATAAATGAACAAAACGAGGAGGTCCGAGTAGTTCAACGATCGTTTCAAAAGATCCAGACGAGTGGAAGTGGGACGTTCGCTGAGCTGAAAATGTTTTCTAATGTTACTATTTTTAAGATAGTGTCTAACCTGTAAGATAGTGTCTGTGGTAAGGAAACTCAAATTTGTTTTTGTAATACTGGCTAGATAGTCTTCCAATGCGAATTCTGAGTTTTAAAATTTGGAATTTAGAAATCGGAGTTTGAAAATCGGGAAATGAAAATTAAAATATTCAAAATTAGATTCCAGACATTCCAATTTTCAAATTCAGACTTTCAATTTCGATATTGTTTCCGATTTTTGATTTTCTGGCTTTCAGATTTTCCTATTTTCAGGTTTTCATCATGGAATTCATAATTTTGAGTTTTTACTTTTAAAAAAATCAMAGTTTCAAAAAGTTGATCACATCTTCTGCATTATTTTAAAAAATTAGTATCATTTCAGTTCTGATTGATCCATTTATCCCTTTCTCATTAGAGCGCAATTGTCGAAATTGAATTTGAAAAAAAATCTCCGTTTCGAAAACTTTTCAAAAAATTTTCGGATTATTTTGAATGGCTAGTTAACTTCGATTCGATCTAACTTCGATCTAACTTCGATTTCTTATTAGAGCGCGTTTCTTGGCGGAATTCAAAACGTTGAACTTTTTTTCAAAAAAAATCCAGTTTCAAAAACTTGATGAAATCTTCTGGATTATTTTGACTACTAATGTTCTTTCTATTTCTTCTTTGAAGCACACCTGCCAAAAACTTGCATTTTTAAAAATTGATTTTAAAAAAGCACTGCCGTTTCAAAATATTGACTAAACTTTTCGGATTATTCTGTTACTGGAGTATCGATGAATTGAATACTTTTCATTAGAACGCGTTTTTTGGAAGAAGTCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>331 276 104 71 53 49 44 20 19 15 6 6 4 2</canonical_bands>
                <polymorphic_bands>331 296 104 71 53 49 44 19 15 6 6 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAAATTAGATTCCAGACATTC</pcr_primer_p1>
		<pcr_primer_p2>GCTCTAATGAGAAAGGGATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCAAAATTAGATTCCAGACATTCCAATTTTCAAATTCAGACTTTCAATTTCGATATTGTTTCCGATTTTTGATTTTCTGGCTTTCAGATTTTCCTATTTTCAGGTTTTCATCATGGAATTCATAATTTTGAGTTTTTACTTTTAAAAAAATCACAGTTTCAAAAAGTTGATCACATCTTCTGCATTATTTTAAAAAATTAGTATCATTTCAGTTCTGATTGATCCATTTATCCCTTTCTCATTAGAGC</canonical_amplicon>
		<polymorphic_amplicon>TCAAAATTAGATTCCAGACATTCCAATTTTCAAATTCAGACTTTCAATTTCGATATTGTTTCCGATTTTTGATTTTCTGGCTTTCAGATTTTCCTATTTTCAGGTTTTCATCATGGAATTCATAATTTTGAGTTTTTACTTTTAAAAAAATCAMAGTTTCAAAAAGTTGATCACATCTTCTGCATTATTTTAAAAAATTAGTATCATTTCAGTTCTGATTGATCCATTTATCCCTTTCTCATTAGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15589</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>313096</contig_pos>
        <strand>+</strand>
        <context>AAAAGTTGAT[A/C]ACATCTTCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATAATTTTGAGTTTTTACTTTTAAAAAAATCACAGTTTCAAAAAGTTGAT</left_flank>
        <right_flank>ACATCTTCTGCATTATTTTAAAAAATTAGTATCATTTCAGTTCTGATTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGAGCATCTCCTCCTCTCCAATCATATGTGAGTAGCCAACAAGCACGTGATGGTACATAAATGAACAAAACGAGGAGGTCCGAGTAGTTCAACGATCGTTTCAAAAGATCCAGACGAGTGGAAGTGGGACGTTCGCTGAGCTGAAAATGTTTTCTAATGTTACTATTTTTAAGATAGTGTCTAACCTGTAAGATAGTGTCTGTGGTAAGGAAACTCAAATTTGTTTTTGTAATACTGGCTAGATAGTCTTCCAATGCGAATTCTGAGTTTTAAAATTTGGAATTTAGAAATCGGAGTTTGAAAATCGGGAAATGAAAATTAAAATATTCAAAATTAGATTCCAGACATTCCAATTTTCAAATTCAGACTTTCAATTTCGATATTGTTTCCGATTTTTGATTTTCTGGCTTTCAGATTTTCCTATTTTCAGGTTTTCATCATGGAATTCATAATTTTGAGTTTTTACTTTTAAAAAAATCACAGTTTCAAAAAGTTGATCACATCTTCTGCATTATTTTAAAAAATTAGTATCATTTCAGTTCTGATTGATCCATTTATCCCTTTCTCATTAGAGCGCAATTGTCGAAATTGAATTTGAAAAAAAATCTCCGTTTCGAAAACTTTTCAAAAAATTTTCGGATTATTTTGAATGGCTAGTTAACTTCGATTCGATCTAACTTCGATCTAACTTCGATTTCTTATTAGAGCGCGTTTCTTGGCGGAATTCAAAACGTTGAACTTTTTTTCAAAAAAAATCCAGTTTCAAAAACTTGATGAAATCTTCTGGATTATTTTGACTACTAATGTTCTTTCTATTTCTTCTTTGAAGCACACCTGCCAAAAACTTGCATTTTTAAAAATTGATTTTAAAAAAGCACTGCCGTTTCAAAATATTGACTAAACTTTTCGGATTATTCTGTTACTGGAGTATCGATGAATTGAATACTTTTCATTAGAACGCGTTTTTTGGAAGAAGTCGAAATCTCAATTTTCTCAAAA</canonical>
            <polymorphic>TAGAGCATCTCCTCCTCTCCAATCATATGTGAGTAGCCAACAAGCACGTGATGGTACATAAATGAACAAAACGAGGAGGTCCGAGTAGTTCAACGATCGTTTCAAAAGATCCAGACGAGTGGAAGTGGGACGTTCGCTGAGCTGAAAATGTTTTCTAATGTTACTATTTTTAAGATAGTGTCTAACCTGTAAGATAGTGTCTGTGGTAAGGAAACTCAAATTTGTTTTTGTAATACTGGCTAGATAGTCTTCCAATGCGAATTCTGAGTTTTAAAATTTGGAATTTAGAAATCGGAGTTTGAAAATCGGGAAATGAAAATTAAAATATTCAAAATTAGATTCCAGACATTCCAATTTTCAAATTCAGACTTTCAATTTCGATATTGTTTCCGATTTTTGATTTTCTGGCTTTCAGATTTTCCTATTTTCAGGTTTTCATCATGGAATTCATAATTTTGAGTTTTTACTTTTAAAAAAATCACAGTTTCAAAAAGTTGATMACATCTTCTGCATTATTTTAAAAAATTAGTATCATTTCAGTTCTGATTGATCCATTTATCCCTTTCTCATTAGAGCGCAATTGTCGAAATTGAATTTGAAAAAAAATCTCCGTTTCGAAAACTTTTCAAAAAATTTTCGGATTATTTTGAATGGCTAGTTAACTTCGATTCGATCTAACTTCGATCTAACTTCGATTTCTTATTAGAGCGCGTTTCTTGGCGGAATTCAAAACGTTGAACTTTTTTTCAAAAAAAATCCAGTTTCAAAAACTTGATGAAATCTTCTGGATTATTTTGACTACTAATGTTCTTTCTATTTCTTCTTTGAAGCACACCTGCCAAAAACTTGCATTTTTAAAAATTGATTTTAAAAAAGCACTGCCGTTTCAAAATATTGACTAAACTTTTCGGATTATTCTGTTACTGGAGTATCGATGAATTGAATACTTTTCATTAGAACGCGTTTTTTGGAAGAAGTCGAAATCTCAATTTTCTCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>389 318 123 94 52 13 11</canonical_bands>
                <polymorphic_bands>441 318 123 94 13 11</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>331 276 122 71 53 44 31 20 19 15 6 6 4 2</canonical_bands>
                <polymorphic_bands>351 276 122 71 53 44 31 19 15 6 6 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAAATTAGATTCCAGACATTC</pcr_primer_p1>
		<pcr_primer_p2>GCTCTAATGAGAAAGGGATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCAAAATTAGATTCCAGACATTCCAATTTTCAAATTCAGACTTTCAATTTCGATATTGTTTCCGATTTTTGATTTTCTGGCTTTCAGATTTTCCTATTTTCAGGTTTTCATCATGGAATTCATAATTTTGAGTTTTTACTTTTAAAAAAATCACAGTTTCAAAAAGTTGATCACATCTTCTGCATTATTTTAAAAAATTAGTATCATTTCAGTTCTGATTGATCCATTTATCCCTTTCTCATTAGAGC</canonical_amplicon>
		<polymorphic_amplicon>TCAAAATTAGATTCCAGACATTCCAATTTTCAAATTCAGACTTTCAATTTCGATATTGTTTCCGATTTTTGATTTTCTGGCTTTCAGATTTTCCTATTTTCAGGTTTTCATCATGGAATTCATAATTTTGAGTTTTTACTTTTAAAAAAATCACAGTTTCAAAAAGTTGATMACATCTTCTGCATTATTTTAAAAAATTAGTATCATTTCAGTTCTGATTGATCCATTTATCCCTTTCTCATTAGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15590</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>313116</contig_pos>
        <strand>+</strand>
        <context>GCATTATTTT[A/T]AAAAATTAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAAAAAAATCACAGTTTCAAAAAGTTGATCACATCTTCTGCATTATTTT</left_flank>
        <right_flank>AAAAATTAGTATCATTTCAGTTCTGATTGATCCATTTATCCCTTTCTCAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCATATGTGAGTAGCCAACAAGCACGTGATGGTACATAAATGAACAAAACGAGGAGGTCCGAGTAGTTCAACGATCGTTTCAAAAGATCCAGACGAGTGGAAGTGGGACGTTCGCTGAGCTGAAAATGTTTTCTAATGTTACTATTTTTAAGATAGTGTCTAACCTGTAAGATAGTGTCTGTGGTAAGGAAACTCAAATTTGTTTTTGTAATACTGGCTAGATAGTCTTCCAATGCGAATTCTGAGTTTTAAAATTTGGAATTTAGAAATCGGAGTTTGAAAATCGGGAAATGAAAATTAAAATATTCAAAATTAGATTCCAGACATTCCAATTTTCAAATTCAGACTTTCAATTTCGATATTGTTTCCGATTTTTGATTTTCTGGCTTTCAGATTTTCCTATTTTCAGGTTTTCATCATGGAATTCATAATTTTGAGTTTTTACTTTTAAAAAAATCACAGTTTCAAAAAGTTGATCACATCTTCTGCATTATTTTAAAAAATTAGTATCATTTCAGTTCTGATTGATCCATTTATCCCTTTCTCATTAGAGCGCAATTGTCGAAATTGAATTTGAAAAAAAATCTCCGTTTCGAAAACTTTTCAAAAAATTTTCGGATTATTTTGAATGGCTAGTTAACTTCGATTCGATCTAACTTCGATCTAACTTCGATTTCTTATTAGAGCGCGTTTCTTGGCGGAATTCAAAACGTTGAACTTTTTTTCAAAAAAAATCCAGTTTCAAAAACTTGATGAAATCTTCTGGATTATTTTGACTACTAATGTTCTTTCTATTTCTTCTTTGAAGCACACCTGCCAAAAACTTGCATTTTTAAAAATTGATTTTAAAAAAGCACTGCCGTTTCAAAATATTGACTAAACTTTTCGGATTATTCTGTTACTGGAGTATCGATGAATTGAATACTTTTCATTAGAACGCGTTTTTTGGAAGAAGTCGAAATCTCAATTTTCTCAAAAAAAATCACAATTTCAAAAAG</canonical>
            <polymorphic>AATCATATGTGAGTAGCCAACAAGCACGTGATGGTACATAAATGAACAAAACGAGGAGGTCCGAGTAGTTCAACGATCGTTTCAAAAGATCCAGACGAGTGGAAGTGGGACGTTCGCTGAGCTGAAAATGTTTTCTAATGTTACTATTTTTAAGATAGTGTCTAACCTGTAAGATAGTGTCTGTGGTAAGGAAACTCAAATTTGTTTTTGTAATACTGGCTAGATAGTCTTCCAATGCGAATTCTGAGTTTTAAAATTTGGAATTTAGAAATCGGAGTTTGAAAATCGGGAAATGAAAATTAAAATATTCAAAATTAGATTCCAGACATTCCAATTTTCAAATTCAGACTTTCAATTTCGATATTGTTTCCGATTTTTGATTTTCTGGCTTTCAGATTTTCCTATTTTCAGGTTTTCATCATGGAATTCATAATTTTGAGTTTTTACTTTTAAAAAAATCACAGTTTCAAAAAGTTGATCACATCTTCTGCATTATTTTWAAAAATTAGTATCATTTCAGTTCTGATTGATCCATTTATCCCTTTCTCATTAGAGCGCAATTGTCGAAATTGAATTTGAAAAAAAATCTCCGTTTCGAAAACTTTTCAAAAAATTTTCGGATTATTTTGAATGGCTAGTTAACTTCGATTCGATCTAACTTCGATCTAACTTCGATTTCTTATTAGAGCGCGTTTCTTGGCGGAATTCAAAACGTTGAACTTTTTTTCAAAAAAAATCCAGTTTCAAAAACTTGATGAAATCTTCTGGATTATTTTGACTACTAATGTTCTTTCTATTTCTTCTTTGAAGCACACCTGCCAAAAACTTGCATTTTTAAAAATTGATTTTAAAAAAGCACTGCCGTTTCAAAATATTGACTAAACTTTTCGGATTATTCTGTTACTGGAGTATCGATGAATTGAATACTTTTCATTAGAACGCGTTTTTTGGAAGAAGTCGAAATCTCAATTTTCTCAAAAAAAATCACAATTTCAAAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>337 252 199 151 48 13</canonical_bands>
                <polymorphic_bands>385 252 199 151 13</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>196 152 150 150 141 101 49 48 13</canonical_bands>
                <polymorphic_bands>196 189 152 150 150 101 49 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAAATTAGATTCCAGACATTC</pcr_primer_p1>
		<pcr_primer_p2>GCTCTAATGAGAAAGGGATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCAAAATTAGATTCCAGACATTCCAATTTTCAAATTCAGACTTTCAATTTCGATATTGTTTCCGATTTTTGATTTTCTGGCTTTCAGATTTTCCTATTTTCAGGTTTTCATCATGGAATTCATAATTTTGAGTTTTTACTTTTAAAAAAATCACAGTTTCAAAAAGTTGATCACATCTTCTGCATTATTTTAAAAAATTAGTATCATTTCAGTTCTGATTGATCCATTTATCCCTTTCTCATTAGAGC</canonical_amplicon>
		<polymorphic_amplicon>TCAAAATTAGATTCCAGACATTCCAATTTTCAAATTCAGACTTTCAATTTCGATATTGTTTCCGATTTTTGATTTTCTGGCTTTCAGATTTTCCTATTTTCAGGTTTTCATCATGGAATTCATAATTTTGAGTTTTTACTTTTAAAAAAATCACAGTTTCAAAAAGTTGATCACATCTTCTGCATTATTTTWAAAAATTAGTATCATTTCAGTTCTGATTGATCCATTTATCCCTTTCTCATTAGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15591</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>315619</contig_pos>
        <strand>+</strand>
        <context>ATTTGAAATT[C/T]TCAGCAATAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTATTTGAAATT</left_flank>
        <right_flank>TCAGCAATAGAGCGCAGTTAGCATTTGTAATTCGTTGAATTTTTTTTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTATTTGAAATTTTCAGCAATAGAGCGCAGTTAGCATTTGTAATTCGTTGAATTTTTTTTCGAAATTCAATACTTTTTTCCTAGAATGTTCTAGAAGAAAAACTATCATTAAAACTCTAAAAAGATCCTTAAGCCACTTTTTGATTGAATAGAAAAAAACGGGGAAAAATGTGAAAAAAATGCCGGATTAGATGAACAAGGTGACGTGAGGGAGAAGAAAAAATAATTCAAGTTGCCTCCTATTTCTCGTGAAGAGTCAAAAGAGAGGAAATGAAAAAAGAAGAAGAAGAAAATAAACTCCAAGTTTGACCGATTAGACAAGATTATTCCGAGTATACATATCCGCCGATTTCTTGGGATTAGATTTTGATTAAATTGACGAAATAGAAGATATTTTCTATTTTTAAGATCTTTTAAAACAAAAAGGGGGATCAAAAATTTGAAGTTTTTCGTACTATGAAATTGAGATTTTCACCATCGAATTAATTTGAAAATTATCGAATTTGGAATAAA</canonical>
            <polymorphic>TAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTATTTGAAATTYTCAGCAATAGAGCGCAGTTAGCATTTGTAATTCGTTGAATTTTTTTTCGAAATTCAATACTTTTTTCCTAGAATGTTCTAGAAGAAAAACTATCATTAAAACTCTAAAAAGATCCTTAAGCCACTTTTTGATTGAATAGAAAAAAACGGGGAAAAATGTGAAAAAAATGCCGGATTAGATGAACAAGGTGACGTGAGGGAGAAGAAAAAATAATTCAAGTTGCCTCCTATTTCTCGTGAAGAGTCAAAAGAGAGGAAATGAAAAAAGAAGAAGAAGAAAATAAACTCCAAGTTTGACCGATTAGACAAGATTATTCCGAGTATACATATCCGCCGATTTCTTGGGATTAGATTTTGATTAAATTGACGAAATAGAAGATATTTTCTATTTTTAAGATCTTTTAAAACAAAAAGGGGGATCAAAAATTTGAAGTTTTTCGTACTATGAAATTGAGATTTTCACCATCGAATTAATTTGAAAATTATCGAATTTGGAATAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>373 163 114 64 63 55 50 42 24 13 13 11 8 7</canonical_bands>
                <polymorphic_bands>373 205 114 64 63 55 50 24 13 13 11 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTCATAAAAACAAAATAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>CTATTCAATCAAAAAGTGGCTTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTATTTGAAATTTTCAGCAATAGAGCGCAGTTAGCATTTGTAATTCGTTGAATTTTTTTTCGAAATTCAATACTTTTTTCCTAGAATGTTCTAGAAGAAAAACTATCATTAAAACTCTAAAAAGATCCTTAAGCCACTTTTTGATTGAATAG</canonical_amplicon>
		<polymorphic_amplicon>TGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTATTTGAAATTYTCAGCAATAGAGCGCAGTTAGCATTTGTAATTCGTTGAATTTTTTTTCGAAATTCAATACTTTTTTCCTAGAATGTTCTAGAAGAAAAACTATCATTAAAACTCTAAAAAGATCCTTAAGCCACTTTTTGATTGAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15592</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>315565</contig_pos>
        <strand>+</strand>
        <context>GATTTTTGAA[A/T]AGAAAAACCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAA</left_flank>
        <right_flank>AGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTATTTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCACAAAAAATTGAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTATTTGAAATTTTCAGCAATAGAGCGCAGTTAGCATTTGTAATTCGTTGAATTTTTTTTCGAAATTCAATACTTTTTTCCTAGAATGTTCTAGAAGAAAAACTATCATTAAAACTCTAAAAAGATCCTTAAGCCACTTTTTGATTGAATAGAAAAAAACGGGGAAAAATGTGAAAAAAATGCCGGATTAGATGAACAAGGTGACGTGAGGGAGAAGAAAAAATAATTCAAGTTGCCTCCTATTTCTCGTGAAGAGTCAAAAGAGAGGAAATGAAAAAAGAAGAAGAAGAAAATAAACTCCAAGTTTGACCGATTAGACAAGATTATTCCGAGTATACATATCCGCCGATTTCTTGGGATTAGATTTTGATTAAATTGACGAAATAGAAGATATTTTCTATTTTTAAGATCTTTTAAAACAAAAAGGGGGATCAAAAATTTGAAGTTTTTCGTACTATG</canonical>
            <polymorphic>GTCACAAAAAATTGAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAAWAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTATTTGAAATTTTCAGCAATAGAGCGCAGTTAGCATTTGTAATTCGTTGAATTTTTTTTCGAAATTCAATACTTTTTTCCTAGAATGTTCTAGAAGAAAAACTATCATTAAAACTCTAAAAAGATCCTTAAGCCACTTTTTGATTGAATAGAAAAAAACGGGGAAAAATGTGAAAAAAATGCCGGATTAGATGAACAAGGTGACGTGAGGGAGAAGAAAAAATAATTCAAGTTGCCTCCTATTTCTCGTGAAGAGTCAAAAGAGAGGAAATGAAAAAAGAAGAAGAAGAAAATAAACTCCAAGTTTGACCGATTAGACAAGATTATTCCGAGTATACATATCCGCCGATTTCTTGGGATTAGATTTTGATTAAATTGACGAAATAGAAGATATTTTCTATTTTTAAGATCTTTTAAAACAAAAAGGGGGATCAAAAATTTGAAGTTTTTCGTACTATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATCAGTGGAGCGAATTTT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTCAACGAATTACAAATG</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>CTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTATTTGAAATTTTCAGCAATAGAGCGCAGTTAGCATTTGTAATTCGTTGAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>CTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAAWAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTATTTGAAATTTTCAGCAATAGAGCGCAGTTAGCATTTGTAATTCGTTGAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15593</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>315541</contig_pos>
        <strand>+</strand>
        <context>AAAACAGTAA[A/T]TATTCGTCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAA</left_flank>
        <right_flank>TATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATTTCAAAAAAGGAAAATCGGTCACAAAAAATTGAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTATTTGAAATTTTCAGCAATAGAGCGCAGTTAGCATTTGTAATTCGTTGAATTTTTTTTCGAAATTCAATACTTTTTTCCTAGAATGTTCTAGAAGAAAAACTATCATTAAAACTCTAAAAAGATCCTTAAGCCACTTTTTGATTGAATAGAAAAAAACGGGGAAAAATGTGAAAAAAATGCCGGATTAGATGAACAAGGTGACGTGAGGGAGAAGAAAAAATAATTCAAGTTGCCTCCTATTTCTCGTGAAGAGTCAAAAGAGAGGAAATGAAAAAAGAAGAAGAAGAAAATAAACTCCAAGTTTGACCGATTAGACAAGATTATTCCGAGTATACATATCCGCCGATTTCTTGGGATTAGATTTTGATTAAATTGACGAAATAGAAGATATTTTCTATTTTTAAGATCTTTTAAAACAAAAAGGGGGATCAA</canonical>
            <polymorphic>AAAAATTTCAAAAAAGGAAAATCGGTCACAAAAAATTGAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAWTATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTATTTGAAATTTTCAGCAATAGAGCGCAGTTAGCATTTGTAATTCGTTGAATTTTTTTTCGAAATTCAATACTTTTTTCCTAGAATGTTCTAGAAGAAAAACTATCATTAAAACTCTAAAAAGATCCTTAAGCCACTTTTTGATTGAATAGAAAAAAACGGGGAAAAATGTGAAAAAAATGCCGGATTAGATGAACAAGGTGACGTGAGGGAGAAGAAAAAATAATTCAAGTTGCCTCCTATTTCTCGTGAAGAGTCAAAAGAGAGGAAATGAAAAAAGAAGAAGAAGAAAATAAACTCCAAGTTTGACCGATTAGACAAGATTATTCCGAGTATACATATCCGCCGATTTCTTGGGATTAGATTTTGATTAAATTGACGAAATAGAAGATATTTTCTATTTTTAAGATCTTTTAAAACAAAAAGGGGGATCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATCGAACGAATTACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATAATCGCTTTTGAGTGTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTAT</canonical_amplicon>
		<polymorphic_amplicon>AAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAWTATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15594</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>315507</contig_pos>
        <strand>+</strand>
        <context>TKCTCCATAT[C/T]AGTTTTGTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATAT</left_flank>
        <right_flank>AGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATCACGTCAGAATTCGGAGTTTTTCGAAAAAAAAATTTCAAAAAAGGAAAATCGGTCACAAAAAATTGAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTATTTGAAATTTTCAGCAATAGAGCGCAGTTAGCATTTGTAATTCGTTGAATTTTTTTTCGAAATTCAATACTTTTTTCCTAGAATGTTCTAGAAGAAAAACTATCATTAAAACTCTAAAAAGATCCTTAAGCCACTTTTTGATTGAATAGAAAAAAACGGGGAAAAATGTGAAAAAAATGCCGGATTAGATGAACAAGGTGACGTGAGGGAGAAGAAAAAATAATTCAAGTTGCCTCCTATTTCTCGTGAAGAGTCAAAAGAGAGGAAATGAAAAAAGAAGAAGAAGAAAATAAACTCCAAGTTTGACCGATTAGACAAGATTATTCCGAGTATACATATCCGCCGATTTCTTGGGATTAGATTTTGATTAAATTGACGAAATAGAAGATATTTTCTAT</canonical>
            <polymorphic>AAAAATCACGTCAGAATTCGGAGTTTTTCGAAAAAAAAATTTCAAAAAAGGAAAATCGGTCACAAAAAATTGAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATYAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTATTTGAAATTTTCAGCAATAGAGCGCAGTTAGCATTTGTAATTCGTTGAATTTTTTTTCGAAATTCAATACTTTTTTCCTAGAATGTTCTAGAAGAAAAACTATCATTAAAACTCTAAAAAGATCCTTAAGCCACTTTTTGATTGAATAGAAAAAAACGGGGAAAAATGTGAAAAAAATGCCGGATTAGATGAACAAGGTGACGTGAGGGAGAAGAAAAAATAATTCAAGTTGCCTCCTATTTCTCGTGAAGAGTCAAAAGAGAGGAAATGAAAAAAGAAGAAGAAGAAAATAAACTCCAAGTTTGACCGATTAGACAAGATTATTCCGAGTATACATATCCGCCGATTTCTTGGGATTAGATTTTGATTAAATTGACGAAATAGAAGATATTTTCTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCGAACGAATTACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATAATCGCTTTTGAGTGTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTAT</canonical_amplicon>
		<polymorphic_amplicon>AAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATYAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15595</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>315498</contig_pos>
        <strand>+</strand>
        <context>TGTACTATTT[G/T]CTCCATATYA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTT</left_flank>
        <right_flank>CTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTAGGCATAAAAATCACGTCAGAATTCGGAGTTTTTCGAAAAAAAAATTTCAAAAAAGGAAAATCGGTCACAAAAAATTGAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTATTTGAAATTTTCAGCAATAGAGCGCAGTTAGCATTTGTAATTCGTTGAATTTTTTTTCGAAATTCAATACTTTTTTCCTAGAATGTTCTAGAAGAAAAACTATCATTAAAACTCTAAAAAGATCCTTAAGCCACTTTTTGATTGAATAGAAAAAAACGGGGAAAAATGTGAAAAAAATGCCGGATTAGATGAACAAGGTGACGTGAGGGAGAAGAAAAAATAATTCAAGTTGCCTCCTATTTCTCGTGAAGAGTCAAAAGAGAGGAAATGAAAAAAGAAGAAGAAGAAAATAAACTCCAAGTTTGACCGATTAGACAAGATTATTCCGAGTATACATATCCGCCGATTTCTTGGGATTAGATTTTGATTAAATTGACGAAATAGAAGAT</canonical>
            <polymorphic>GTTAGGCATAAAAATCACGTCAGAATTCGGAGTTTTTCGAAAAAAAAATTTCAAAAAAGGAAAATCGGTCACAAAAAATTGAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTKCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTATTTGAAATTTTCAGCAATAGAGCGCAGTTAGCATTTGTAATTCGTTGAATTTTTTTTCGAAATTCAATACTTTTTTCCTAGAATGTTCTAGAAGAAAAACTATCATTAAAACTCTAAAAAGATCCTTAAGCCACTTTTTGATTGAATAGAAAAAAACGGGGAAAAATGTGAAAAAAATGCCGGATTAGATGAACAAGGTGACGTGAGGGAGAAGAAAAAATAATTCAAGTTGCCTCCTATTTCTCGTGAAGAGTCAAAAGAGAGGAAATGAAAAAAGAAGAAGAAGAAAATAAACTCCAAGTTTGACCGATTAGACAAGATTATTCCGAGTATACATATCCGCCGATTTCTTGGGATTAGATTTTGATTAAATTGACGAAATAGAAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCGAACGAATTACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATAATCGCTTTTGAGTGTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTAT</canonical_amplicon>
		<polymorphic_amplicon>AAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTKCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15596</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>315423</contig_pos>
        <strand>+</strand>
        <context>GGTCAAAAAA[A/T]TGATTTTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAA</left_flank>
        <right_flank>TGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGGAGCTTCAGGAAATTGGAATTTTTCAGCTGTTTCTTGTAGAAATCACCTGTTTTTCGGTACTATTTTCAGGAGTTAGGCATAAAAATCACGTCAGAATTCGGAGTTTTTCGAAAAAAAAATTTCAAAAAAGGAAAATCGGTCACAAAAAATTGAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTATTTGAAATTTTCAGCAATAGAGCGCAGTTAGCATTTGTAATTCGTTGAATTTTTTTTCGAAATTCAATACTTTTTTCCTAGAATGTTCTAGAAGAAAAACTATCATTAAAACTCTAAAAAGATCCTTAAGCCACTTTTTGATTGAATAGAAAAAAACGGGGAAAAATGTGAAAAAAATGCCGGATTAGATGAACAAGGTGACGTGAGGGAGAAGAAAAAATAATTCAAGTTGCCTCCTATTTCTCGTGAAGAGTCAAAAGAGAGGAAATGAAAAAAGAAGAAGAAGAAAATAAACTCCAAGTTTGACCGATTAG</canonical>
            <polymorphic>GCGGAGCTTCAGGAAATTGGAATTTTTCAGCTGTTTCTTGTAGAAATCACCTGTTTTTCGGTACTATTTTCAGGAGTTAGGCATAAAAATCACGTCAGAATTCGGAGTTTTTCGAAAAAAAAATTTCAAAAAAGGAAAATCGGTCACAAAAAATTGAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAAWTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTATTTGAAATTTTCAGCAATAGAGCGCAGTTAGCATTTGTAATTCGTTGAATTTTTTTTCGAAATTCAATACTTTTTTCCTAGAATGTTCTAGAAGAAAAACTATCATTAAAACTCTAAAAAGATCCTTAAGCCACTTTTTGATTGAATAGAAAAAAACGGGGAAAAATGTGAAAAAAATGCCGGATTAGATGAACAAGGTGACGTGAGGGAGAAGAAAAAATAATTCAAGTTGCCTCCTATTTCTCGTGAAGAGTCAAAAGAGAGGAAATGAAAAAAGAAGAAGAAGAAAATAAACTCCAAGTTTGACCGATTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>163 161 93 78 70 54 41 33 31 31 30 30 24 24 23 22 19 14 13 11 9 8 7 6 5</canonical_bands>
                <polymorphic_bands>163 161 93 78 70 54 50 41 33 31 30 30 24 24 23 22 14 13 11 9 8 7 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATCGAACGAATTACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATAATCGCTTTTGAGTGTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTAT</canonical_amplicon>
		<polymorphic_amplicon>AAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAAWTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15598</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>315401</contig_pos>
        <strand>+</strand>
        <context>CCAAATCTCA[A/G]AATTCTAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCA</left_flank>
        <right_flank>AATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTGTGAAGGGGAAAAAGGGGCGGAGCTTCAGGAAATTGGAATTTTTCAGCTGTTTCTTGTAGAAATCACCTGTTTTTCGGTACTATTTTCAGGAGTTAGGCATAAAAATCACGTCAGAATTCGGAGTTTTTCGAAAAAAAAATTTCAAAAAAGGAAAATCGGTCACAAAAAATTGAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTATTTGAAATTTTCAGCAATAGAGCGCAGTTAGCATTTGTAATTCGTTGAATTTTTTTTCGAAATTCAATACTTTTTTCCTAGAATGTTCTAGAAGAAAAACTATCATTAAAACTCTAAAAAGATCCTTAAGCCACTTTTTGATTGAATAGAAAAAAACGGGGAAAAATGTGAAAAAAATGCCGGATTAGATGAACAAGGTGACGTGAGGGAGAAGAAAAAATAATTCAAGTTGCCTCCTATTTCTCGTGAAGAGTCAAAAGAGAGGAAATGAAAAAAGAAGAAGAAGAAAATA</canonical>
            <polymorphic>AAATTGTGAAGGGGAAAAAGGGGCGGAGCTTCAGGAAATTGGAATTTTTCAGCTGTTTCTTGTAGAAATCACCTGTTTTTCGGTACTATTTTCAGGAGTTAGGCATAAAAATCACGTCAGAATTCGGAGTTTTTCGAAAAAAAAATTTCAAAAAAGGAAAATCGGTCACAAAAAATTGAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCARAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTATTTGAAATTTTCAGCAATAGAGCGCAGTTAGCATTTGTAATTCGTTGAATTTTTTTTCGAAATTCAATACTTTTTTCCTAGAATGTTCTAGAAGAAAAACTATCATTAAAACTCTAAAAAGATCCTTAAGCCACTTTTTGATTGAATAGAAAAAAACGGGGAAAAATGTGAAAAAAATGCCGGATTAGATGAACAAGGTGACGTGAGGGAGAAGAAAAAATAATTCAAGTTGCCTCCTATTTCTCGTGAAGAGTCAAAAGAGAGGAAATGAAAAAAGAAGAAGAAGAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>232 163 154 78 63 55 50 42 42 35 24 23 13 11 8 7</canonical_bands>
                <polymorphic_bands>232 163 154 105 78 63 42 42 35 24 23 13 11 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCGAAGAAGAAAAACAGTAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCAAAAATCAGTTTGACGAATA</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>TTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGA</canonical_amplicon>
		<polymorphic_amplicon>TTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCARAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15602</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>315269</contig_pos>
        <strand>+</strand>
        <context>ATTCAAATGC[G/T]CTCTACTGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGC</left_flank>
        <right_flank>CTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTTATTGTTGTTGGGAAGCATCTGGAAATATATCATTGGTATTAAAATTATGAAATTTCAGAAAAAAGATAGGAAGCATTGAAAAACGGAAATTCTGCAAAAATAAATAAGAAGTAAATGAAACTGGAAAAAATTGTGAAGGGGAAAAAGGGGCGGAGCTTCAGGAAATTGGAATTTTTCAGCTGTTTCTTGTAGAAATCACCTGTTTTTCGGTACTATTTTCAGGAGTTAGGCATAAAAATCACGTCAGAATTCGGAGTTTTTCGAAAAAAAAATTTCAAAAAAGGAAAATCGGTCACAAAAAATTGAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTATTTGAAATTTTCAGCAATAGAGCGCAGTTAGCATTTGTAATTCGTTGAATTTTTTTTCGAAATTCAATACTTTTTTCCTAGAATGTTCTAGAAGAAAAACTATCATTAAAACTCTAAAAAGATCCTTAAGCCACTTTTTGATTGAATAGAAAAAAACGGG</canonical>
            <polymorphic>ATGTTATTGTTGTTGGGAAGCATCTGGAAATATATCATTGGTATTAAAATTATGAAATTTCAGAAAAAAGATAGGAAGCATTGAAAAACGGAAATTCTGCAAAAATAAATAAGAAGTAAATGAAACTGGAAAAAATTGTGAAGGGGAAAAAGGGGCGGAGCTTCAGGAAATTGGAATTTTTCAGCTGTTTCTTGTAGAAATCACCTGTTTTTCGGTACTATTTTCAGGAGTTAGGCATAAAAATCACGTCAGAATTCGGAGTTTTTCGAAAAAAAAATTTCAAAAAAGGAAAATCGGTCACAAAAAATTGAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCKCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTATTTGAAATTTTCAGCAATAGAGCGCAGTTAGCATTTGTAATTCGTTGAATTTTTTTTCGAAATTCAATACTTTTTTCCTAGAATGTTCTAGAAGAAAAACTATCATTAAAACTCTAAAAAGATCCTTAAGCCACTTTTTGATTGAATAGAAAAAAACGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTTCAGATCTCAATGTTTTG</pcr_primer_p1>
		<pcr_primer_p2>CCAAAATTTACTGTTTTTCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGG</canonical_amplicon>
		<polymorphic_amplicon>GAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCKCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15603</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>315218</contig_pos>
        <strand>+</strand>
        <context>TTAAATAATA[G/T]CTAGTTGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATA</left_flank>
        <right_flank>CTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGTGTTGAAGGATTCTGATGACGTTGACGTCATCATCGTCGACGTGGAGATGTTATTGTTGTTGGGAAGCATCTGGAAATATATCATTGGTATTAAAATTATGAAATTTCAGAAAAAAGATAGGAAGCATTGAAAAACGGAAATTCTGCAAAAATAAATAAGAAGTAAATGAAACTGGAAAAAATTGTGAAGGGGAAAAAGGGGCGGAGCTTCAGGAAATTGGAATTTTTCAGCTGTTTCTTGTAGAAATCACCTGTTTTTCGGTACTATTTTCAGGAGTTAGGCATAAAAATCACGTCAGAATTCGGAGTTTTTCGAAAAAAAAATTTCAAAAAAGGAAAATCGGTCACAAAAAATTGAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTATTTGAAATTTTCAGCAATAGAGCGCAGTTAGCATTTGTAATTCGTTGAATTTTTTTTCGAAATTCAATACTTTTTTCCTAGAATGTTCTAGAAGAAAAACTATCATTAA</canonical>
            <polymorphic>TCAGTGTTGAAGGATTCTGATGACGTTGACGTCATCATCGTCGACGTGGAGATGTTATTGTTGTTGGGAAGCATCTGGAAATATATCATTGGTATTAAAATTATGAAATTTCAGAAAAAAGATAGGAAGCATTGAAAAACGGAAATTCTGCAAAAATAAATAAGAAGTAAATGAAACTGGAAAAAATTGTGAAGGGGAAAAAGGGGCGGAGCTTCAGGAAATTGGAATTTTTCAGCTGTTTCTTGTAGAAATCACCTGTTTTTCGGTACTATTTTCAGGAGTTAGGCATAAAAATCACGTCAGAATTCGGAGTTTTTCGAAAAAAAAATTTCAAAAAAGGAAAATCGGTCACAAAAAATTGAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATAKCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTATTTGAAATTTTCAGCAATAGAGCGCAGTTAGCATTTGTAATTCGTTGAATTTTTTTTCGAAATTCAATACTTTTTTCCTAGAATGTTCTAGAAGAAAAACTATCATTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTTCAGATCTCAATGTTTTG</pcr_primer_p1>
		<pcr_primer_p2>CCAAAATTTACTGTTTTTCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGG</canonical_amplicon>
		<polymorphic_amplicon>GAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATAKCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15605</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>423858</contig_pos>
        <strand>+</strand>
        <context>AAAGTTTAAG[A/C]TTCTTCATAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGAATTTTGGAATTTCGAAACAGGTTTACAAGTTATTGAAAAGTTTAAG</left_flank>
        <right_flank>TTCTTCATATCACAATACATCCTCTAGTGCCCTACAAAAATAATATAGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGTTACAGTTTTGAAGAGTCAATGAAATATCAGAATGTTTCCCATTACGATAATGTTTCAATAATTATATCATTCATTTTCAGATAGTCTTGAAATTCAGAAATGAATTTTTCAAATTTTGGTTTTTTAACTGTTTCAAGCTATCATCAAAACAGTACTATTGAAATCACTGACACTTTTTTTGCAGTTTTAAATTACTGAGTTTATTGAATTTTTACAAATTTTAAACAACGAAAGTTTGTTTTCAACTGGTTCAAGCTGTCATTAAATATTTTCCCTATATTTTTTGTTTAATAGGAACAAGAAATTTTATAATTCAAAGGATGTCACTATTTCAAAACGTTCTGAAATTATCGAAAATGAAAAAAGTTACTAGTAGCACTCGCTTAACAGTTCAACCATTCCAAATCTTGGTTTTTCTATTTCAAGTTTGAAAACTTTCAAATGAAGAATTTTGGAATTTCGAAACAGGTTTACAAGTTATTGAAAAGTTTAAGATTCTTCATATCACAATACATCCTCTAGTGCCCTACAAAAATAATATAGATAAAAATTACTGTTTCAAAAAGTTCTGAAATTTTGGATTTTTTTTTTTGGAATTCCATTTAGTGCGCAGATGACATATCTCTTATTATTTTTCTATTTTTGTTTCAAGTTATATGATCGAATTCTTCGAAAATTGAATTTTCTTGAATTTTTTACTTCAAAAACTCACAGTTTCCAAAAGTTCTAAAATATCTACAATTTTTTTGAAACTCAATATCTGTTTTGAATTCTCTTCATTCCGACTTACCAGTGTACGGTACCTCCACTCGCTTAAAATTAGCAATCAATTCTTCCTCTTCCTCCTCTTTCGGCGGCTCTTCTCTTCCAATGATCCTCCGACTCTTTCGAATCCCTTCAGCTGCTGGCCTCGGATTTTTTCTTTGATGTGATCTCTTATTTTCTGGATTCTGTAAGTTTTCTGAAGCTTCTGGAACCCTGACGTCTTCTGAACT</canonical>
            <polymorphic>GAAGTTACAGTTTTGAAGAGTCAATGAAATATCAGAATGTTTCCCATTACGATAATGTTTCAATAATTATATCATTCATTTTCAGATAGTCTTGAAATTCAGAAATGAATTTTTCAAATTTTGGTTTTTTAACTGTTTCAAGCTATCATCAAAACAGTACTATTGAAATCACTGACACTTTTTTTGCAGTTTTAAATTACTGAGTTTATTGAATTTTTACAAATTTTAAACAACGAAAGTTTGTTTTCAACTGGTTCAAGCTGTCATTAAATATTTTCCCTATATTTTTTGTTTAATAGGAACAAGAAATTTTATAATTCAAAGGATGTCACTATTTCAAAACGTTCTGAAATTATCGAAAATGAAAAAAGTTACTAGTAGCACTCGCTTAACAGTTCAACCATTCCAAATCTTGGTTTTTCTATTTCAAGTTTGAAAACTTTCAAATGAAGAATTTTGGAATTTCGAAACAGGTTTACAAGTTATTGAAAAGTTTAAGMTTCTTCATATCACAATACATCCTCTAGTGCCCTACAAAAATAATATAGATAAAAATTACTGTTTCAAAAAGTTCTGAAATTTTGGATTTTTTTTTTTGGAATTCCATTTAGTGCGCAGATGACATATCTCTTATTATTTTTCTATTTTTGTTTCAAGTTATATGATCGAATTCTTCGAAAATTGAATTTTCTTGAATTTTTTACTTCAAAAACTCACAGTTTCCAAAAGTTCTAAAATATCTACAATTTTTTTGAAACTCAATATCTGTTTTGAATTCTCTTCATTCCGACTTACCAGTGTACGGTACCTCCACTCGCTTAAAATTAGCAATCAATTCTTCCTCTTCCTCCTCTTTCGGCGGCTCTTCTCTTCCAATGATCCTCCGACTCTTTCGAATCCCTTCAGCTGCTGGCCTCGGATTTTTTCTTTGATGTGATCTCTTATTTTCTGGATTCTGTAAGTTTTCTGAAGCTTCTGGAACCCTGACGTCTTCTGAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>481 387 57 48 18 9</canonical_bands>
                <polymorphic_bands>868 57 48 18 9</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>499 396 57 48</canonical_bands>
                <polymorphic_bands>895 57 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTTTCAAATGAAGAATTTTG</pcr_primer_p1>
		<pcr_primer_p2>TTCGATCATATAACTTGAAACAA</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>AAACTTTCAAATGAAGAATTTTGGAATTTCGAAACAGGTTTACAAGTTATTGAAAAGTTTAAGATTCTTCATATCACAATACATCCTCTAGTGCCCTACAAAAATAATATAGATAAAAATTACTGTTTCAAAAAGTTCTGAAATTTTGGATTTTTTTTTTTGGAATTCCATTTAGTGCGCAGATGACATATCTCTTATTATTTTTCTATTTTTGTTTCAAGTTATATGATCGAA</canonical_amplicon>
		<polymorphic_amplicon>AAACTTTCAAATGAAGAATTTTGGAATTTCGAAACAGGTTTACAAGTTATTGAAAAGTTTAAGMTTCTTCATATCACAATACATCCTCTAGTGCCCTACAAAAATAATATAGATAAAAATTACTGTTTCAAAAAGTTCTGAAATTTTGGATTTTTTTTTTTGGAATTCCATTTAGTGCGCAGATGACATATCTCTTATTATTTTTCTATTTTTGTTTCAAGTTATATGATCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15606</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>424030</contig_pos>
        <strand>+</strand>
        <context>ATGATCGAAT[C/T]CTTCGAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACATATCTCTTATTATTTTTCTATTTTTGTTTCAAGTTATATGATCGAAT</left_flank>
        <right_flank>CTTCGAAAATTGAATTTTCTTGAATTTTTTACTTCAAAAACTCACAGTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACACTTTTTTTGCAGTTTTAAATTACTGAGTTTATTGAATTTTTACAAATTTTAAACAACGAAAGTTTGTTTTCAACTGGTTCAAGCTGTCATTAAATATTTTCCCTATATTTTTTGTTTAATAGGAACAAGAAATTTTATAATTCAAAGGATGTCACTATTTCAAAACGTTCTGAAATTATCGAAAATGAAAAAAGTTACTAGTAGCACTCGCTTAACAGTTCAACCATTCCAAATCTTGGTTTTTCTATTTCAAGTTTGAAAACTTTCAAATGAAGAATTTTGGAATTTCGAAACAGGTTTACAAGTTATTGAAAAGTTTAAGATTCTTCATATCACAATACATCCTCTAGTGCCCTACAAAAATAATATAGATAAAAATTACTGTTTCAAAAAGTTCTGAAATTTTGGATTTTTTTTTTTGGAATTCCATTTAGTGCGCAGATGACATATCTCTTATTATTTTTCTATTTTTGTTTCAAGTTATATGATCGAATTCTTCGAAAATTGAATTTTCTTGAATTTTTTACTTCAAAAACTCACAGTTTCCAAAAGTTCTAAAATATCTACAATTTTTTTGAAACTCAATATCTGTTTTGAATTCTCTTCATTCCGACTTACCAGTGTACGGTACCTCCACTCGCTTAAAATTAGCAATCAATTCTTCCTCTTCCTCCTCTTTCGGCGGCTCTTCTCTTCCAATGATCCTCCGACTCTTTCGAATCCCTTCAGCTGCTGGCCTCGGATTTTTTCTTTGATGTGATCTCTTATTTTCTGGATTCTGTAAGTTTTCTGAAGCTTCTGGAACCCTGACGTCTTCTGAACTCTGATCTTCTGAAGAGTCCATTGGCATTGTTTCATCATTTGGATTCGGATTCGGGGAATTGTAGGCATCCATTGGCTCATTTGAATTCTTCAATTCCAACTCTAGAATTCTGGATGATTCTCCAGAAGACGTTGGCATTTGAATATCGTTAAAATCCTGTGTCAATCCAGAA</canonical>
            <polymorphic>TGACACTTTTTTTGCAGTTTTAAATTACTGAGTTTATTGAATTTTTACAAATTTTAAACAACGAAAGTTTGTTTTCAACTGGTTCAAGCTGTCATTAAATATTTTCCCTATATTTTTTGTTTAATAGGAACAAGAAATTTTATAATTCAAAGGATGTCACTATTTCAAAACGTTCTGAAATTATCGAAAATGAAAAAAGTTACTAGTAGCACTCGCTTAACAGTTCAACCATTCCAAATCTTGGTTTTTCTATTTCAAGTTTGAAAACTTTCAAATGAAGAATTTTGGAATTTCGAAACAGGTTTACAAGTTATTGAAAAGTTTAAGATTCTTCATATCACAATACATCCTCTAGTGCCCTACAAAAATAATATAGATAAAAATTACTGTTTCAAAAAGTTCTGAAATTTTGGATTTTTTTTTTTGGAATTCCATTTAGTGCGCAGATGACATATCTCTTATTATTTTTCTATTTTTGTTTCAAGTTATATGATCGAATYCTTCGAAAATTGAATTTTCTTGAATTTTTTACTTCAAAAACTCACAGTTTCCAAAAGTTCTAAAATATCTACAATTTTTTTGAAACTCAATATCTGTTTTGAATTCTCTTCATTCCGACTTACCAGTGTACGGTACCTCCACTCGCTTAAAATTAGCAATCAATTCTTCCTCTTCCTCCTCTTTCGGCGGCTCTTCTCTTCCAATGATCCTCCGACTCTTTCGAATCCCTTCAGCTGCTGGCCTCGGATTTTTTCTTTGATGTGATCTCTTATTTTCTGGATTCTGTAAGTTTTCTGAAGCTTCTGGAACCCTGACGTCTTCTGAACTCTGATCTTCTGAAGAGTCCATTGGCATTGTTTCATCATTTGGATTCGGATTCGGGGAATTGTAGGCATCCATTGGCTCATTTGAATTCTTCAATTCCAACTCTAGAATTCTGGATGATTCTCCAGAAGACGTTGGCATTTGAATATCGTTAAAATCCTGTGTCAATCCAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>310 145 117 86 79 69 67 39 22 22 16 10 10 8</canonical_bands>
                <polymorphic_bands>310 145 117 86 85 79 67 39 22 22 10 10 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>427 310 105 69 67 22</canonical_bands>
                <polymorphic_bands>427 310 174 67 22</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>223 102 93 86 69 67 50 49 35 29 27 24 22 22 17 14 11 11 10 10 8 8 8 5</canonical_bands>
                <polymorphic_bands>223 102 93 86 80 67 50 49 35 29 27 24 22 22 17 14 11 10 10 8 8 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTCTAGTGCCCTACAAAAATA</pcr_primer_p1>
		<pcr_primer_p2>AAAACAGATATTGAGTTTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CCTCTAGTGCCCTACAAAAATAATATAGATAAAAATTACTGTTTCAAAAAGTTCTGAAATTTTGGATTTTTTTTTTTGGAATTCCATTTAGTGCGCAGATGACATATCTCTTATTATTTTTCTATTTTTGTTTCAAGTTATATGATCGAATTCTTCGAAAATTGAATTTTCTTGAATTTTTTACTTCAAAAACTCACAGTTTCCAAAAGTTCTAAAATATCTACAATTTTTTTGAAACTCAATATCTGTTTT</canonical_amplicon>
		<polymorphic_amplicon>CCTCTAGTGCCCTACAAAAATAATATAGATAAAAATTACTGTTTCAAAAAGTTCTGAAATTTTGGATTTTTTTTTTTGGAATTCCATTTAGTGCGCAGATGACATATCTCTTATTATTTTTCTATTTTTGTTTCAAGTTATATGATCGAATYCTTCGAAAATTGAATTTTCTTGAATTTTTTACTTCAAAAACTCACAGTTTCCAAAAGTTCTAAAATATCTACAATTTTTTTGAAACTCAATATCTGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15607</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>424076</contig_pos>
        <strand>+</strand>
        <context>AAAAACTCAC[A/T]GTTTCCAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAATTCTTCGAAAATTGAATTTTCTTGAATTTTTTACTTCAAAAACTCAC</left_flank>
        <right_flank>GTTTCCAAAAGTTCTAAAATATCTACAATTTTTTTGAAACTCAATATCTG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAATTTTAAACAACGAAAGTTTGTTTTCAACTGGTTCAAGCTGTCATTAAATATTTTCCCTATATTTTTTGTTTAATAGGAACAAGAAATTTTATAATTCAAAGGATGTCACTATTTCAAAACGTTCTGAAATTATCGAAAATGAAAAAAGTTACTAGTAGCACTCGCTTAACAGTTCAACCATTCCAAATCTTGGTTTTTCTATTTCAAGTTTGAAAACTTTCAAATGAAGAATTTTGGAATTTCGAAACAGGTTTACAAGTTATTGAAAAGTTTAAGATTCTTCATATCACAATACATCCTCTAGTGCCCTACAAAAATAATATAGATAAAAATTACTGTTTCAAAAAGTTCTGAAATTTTGGATTTTTTTTTTTGGAATTCCATTTAGTGCGCAGATGACATATCTCTTATTATTTTTCTATTTTTGTTTCAAGTTATATGATCGAATTCTTCGAAAATTGAATTTTCTTGAATTTTTTACTTCAAAAACTCACAGTTTCCAAAAGTTCTAAAATATCTACAATTTTTTTGAAACTCAATATCTGTTTTGAATTCTCTTCATTCCGACTTACCAGTGTACGGTACCTCCACTCGCTTAAAATTAGCAATCAATTCTTCCTCTTCCTCCTCTTTCGGCGGCTCTTCTCTTCCAATGATCCTCCGACTCTTTCGAATCCCTTCAGCTGCTGGCCTCGGATTTTTTCTTTGATGTGATCTCTTATTTTCTGGATTCTGTAAGTTTTCTGAAGCTTCTGGAACCCTGACGTCTTCTGAACTCTGATCTTCTGAAGAGTCCATTGGCATTGTTTCATCATTTGGATTCGGATTCGGGGAATTGTAGGCATCCATTGGCTCATTTGAATTCTTCAATTCCAACTCTAGAATTCTGGATGATTCTCCAGAAGACGTTGGCATTTGAATATCGTTAAAATCCTGTGTCAATCCAGAAGACTCATTTCTTGAAGGCAATTGAAAAACCACGGCTTTGAAAACGT</canonical>
            <polymorphic>ACAAATTTTAAACAACGAAAGTTTGTTTTCAACTGGTTCAAGCTGTCATTAAATATTTTCCCTATATTTTTTGTTTAATAGGAACAAGAAATTTTATAATTCAAAGGATGTCACTATTTCAAAACGTTCTGAAATTATCGAAAATGAAAAAAGTTACTAGTAGCACTCGCTTAACAGTTCAACCATTCCAAATCTTGGTTTTTCTATTTCAAGTTTGAAAACTTTCAAATGAAGAATTTTGGAATTTCGAAACAGGTTTACAAGTTATTGAAAAGTTTAAGATTCTTCATATCACAATACATCCTCTAGTGCCCTACAAAAATAATATAGATAAAAATTACTGTTTCAAAAAGTTCTGAAATTTTGGATTTTTTTTTTTGGAATTCCATTTAGTGCGCAGATGACATATCTCTTATTATTTTTCTATTTTTGTTTCAAGTTATATGATCGAATTCTTCGAAAATTGAATTTTCTTGAATTTTTTACTTCAAAAACTCACWGTTTCCAAAAGTTCTAAAATATCTACAATTTTTTTGAAACTCAATATCTGTTTTGAATTCTCTTCATTCCGACTTACCAGTGTACGGTACCTCCACTCGCTTAAAATTAGCAATCAATTCTTCCTCTTCCTCCTCTTTCGGCGGCTCTTCTCTTCCAATGATCCTCCGACTCTTTCGAATCCCTTCAGCTGCTGGCCTCGGATTTTTTCTTTGATGTGATCTCTTATTTTCTGGATTCTGTAAGTTTTCTGAAGCTTCTGGAACCCTGACGTCTTCTGAACTCTGATCTTCTGAAGAGTCCATTGGCATTGTTTCATCATTTGGATTCGGATTCGGGGAATTGTAGGCATCCATTGGCTCATTTGAATTCTTCAATTCCAACTCTAGAATTCTGGATGATTCTCCAGAAGACGTTGGCATTTGAATATCGTTAAAATCCTGTGTCAATCCAGAAGACTCATTTCTTGAAGGCAATTGAAAAACCACGGCTTTGAAAACGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTAGTGCGCAGATGACATA</pcr_primer_p1>
		<pcr_primer_p2>AAGAGGAGGAAGAGGAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTAGTGCGCAGATGACATATCTCTTATTATTTTTCTATTTTTGTTTCAAGTTATATGATCGAATTCTTCGAAAATTGAATTTTCTTGAATTTTTTACTTCAAAAACTCACAGTTTCCAAAAGTTCTAAAATATCTACAATTTTTTTGAAACTCAATATCTGTTTTGAATTCTCTTCATTCCGACTTACCAGTGTACGGTACCTCCACTCGCTTAAAATTAGCAATCAATTCTTCCTCTTCCTCCTCTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTAGTGCGCAGATGACATATCTCTTATTATTTTTCTATTTTTGTTTCAAGTTATATGATCGAATTCTTCGAAAATTGAATTTTCTTGAATTTTTTACTTCAAAAACTCACWGTTTCCAAAAGTTCTAAAATATCTACAATTTTTTTGAAACTCAATATCTGTTTTGAATTCTCTTCATTCCGACTTACCAGTGTACGGTACCTCCACTCGCTTAAAATTAGCAATCAATTCTTCCTCTTCCTCCTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15608</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>424105</contig_pos>
        <strand>+</strand>
        <context>ATATCTACAA[A/T]TTTTTTGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTTACTTCAAAAACTCACAGTTTCCAAAAGTTCTAAAATATCTACAA</left_flank>
        <right_flank>TTTTTTGAAACTCAATATCTGTTTTGAATTCTCTTCATTCCGACTTACCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACTGGTTCAAGCTGTCATTAAATATTTTCCCTATATTTTTTGTTTAATAGGAACAAGAAATTTTATAATTCAAAGGATGTCACTATTTCAAAACGTTCTGAAATTATCGAAAATGAAAAAAGTTACTAGTAGCACTCGCTTAACAGTTCAACCATTCCAAATCTTGGTTTTTCTATTTCAAGTTTGAAAACTTTCAAATGAAGAATTTTGGAATTTCGAAACAGGTTTACAAGTTATTGAAAAGTTTAAGATTCTTCATATCACAATACATCCTCTAGTGCCCTACAAAAATAATATAGATAAAAATTACTGTTTCAAAAAGTTCTGAAATTTTGGATTTTTTTTTTTGGAATTCCATTTAGTGCGCAGATGACATATCTCTTATTATTTTTCTATTTTTGTTTCAAGTTATATGATCGAATTCTTCGAAAATTGAATTTTCTTGAATTTTTTACTTCAAAAACTCACAGTTTCCAAAAGTTCTAAAATATCTACAATTTTTTTGAAACTCAATATCTGTTTTGAATTCTCTTCATTCCGACTTACCAGTGTACGGTACCTCCACTCGCTTAAAATTAGCAATCAATTCTTCCTCTTCCTCCTCTTTCGGCGGCTCTTCTCTTCCAATGATCCTCCGACTCTTTCGAATCCCTTCAGCTGCTGGCCTCGGATTTTTTCTTTGATGTGATCTCTTATTTTCTGGATTCTGTAAGTTTTCTGAAGCTTCTGGAACCCTGACGTCTTCTGAACTCTGATCTTCTGAAGAGTCCATTGGCATTGTTTCATCATTTGGATTCGGATTCGGGGAATTGTAGGCATCCATTGGCTCATTTGAATTCTTCAATTCCAACTCTAGAATTCTGGATGATTCTCCAGAAGACGTTGGCATTTGAATATCGTTAAAATCCTGTGTCAATCCAGAAGACTCATTTCTTGAAGGCAATTGAAAAACCACGGCTTTGAAAACGTTGTTTCTAGAAGATTCTGAGTCTCTAGAA</canonical>
            <polymorphic>CAACTGGTTCAAGCTGTCATTAAATATTTTCCCTATATTTTTTGTTTAATAGGAACAAGAAATTTTATAATTCAAAGGATGTCACTATTTCAAAACGTTCTGAAATTATCGAAAATGAAAAAAGTTACTAGTAGCACTCGCTTAACAGTTCAACCATTCCAAATCTTGGTTTTTCTATTTCAAGTTTGAAAACTTTCAAATGAAGAATTTTGGAATTTCGAAACAGGTTTACAAGTTATTGAAAAGTTTAAGATTCTTCATATCACAATACATCCTCTAGTGCCCTACAAAAATAATATAGATAAAAATTACTGTTTCAAAAAGTTCTGAAATTTTGGATTTTTTTTTTTGGAATTCCATTTAGTGCGCAGATGACATATCTCTTATTATTTTTCTATTTTTGTTTCAAGTTATATGATCGAATTCTTCGAAAATTGAATTTTCTTGAATTTTTTACTTCAAAAACTCACAGTTTCCAAAAGTTCTAAAATATCTACAAWTTTTTTGAAACTCAATATCTGTTTTGAATTCTCTTCATTCCGACTTACCAGTGTACGGTACCTCCACTCGCTTAAAATTAGCAATCAATTCTTCCTCTTCCTCCTCTTTCGGCGGCTCTTCTCTTCCAATGATCCTCCGACTCTTTCGAATCCCTTCAGCTGCTGGCCTCGGATTTTTTCTTTGATGTGATCTCTTATTTTCTGGATTCTGTAAGTTTTCTGAAGCTTCTGGAACCCTGACGTCTTCTGAACTCTGATCTTCTGAAGAGTCCATTGGCATTGTTTCATCATTTGGATTCGGATTCGGGGAATTGTAGGCATCCATTGGCTCATTTGAATTCTTCAATTCCAACTCTAGAATTCTGGATGATTCTCCAGAAGACGTTGGCATTTGAATATCGTTAAAATCCTGTGTCAATCCAGAAGACTCATTTCTTGAAGGCAATTGAAAAACCACGGCTTTGAAAACGTTGTTTCTAGAAGATTCTGAGTCTCTAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>223 102 93 85 69 60 57 50 49 35 29 27 24 22 14 11 11 10 8 8 8 5</canonical_bands>
                <polymorphic_bands>223 102 93 85 79 69 60 57 49 35 27 24 22 14 11 11 10 8 8 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTAGTGCGCAGATGACATA</pcr_primer_p1>
		<pcr_primer_p2>AAGAGGAGGAAGAGGAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTAGTGCGCAGATGACATATCTCTTATTATTTTTCTATTTTTGTTTCAAGTTATATGATCGAATTCTTCGAAAATTGAATTTTCTTGAATTTTTTACTTCAAAAACTCACAGTTTCCAAAAGTTCTAAAATATCTACAATTTTTTTGAAACTCAATATCTGTTTTGAATTCTCTTCATTCCGACTTACCAGTGTACGGTACCTCCACTCGCTTAAAATTAGCAATCAATTCTTCCTCTTCCTCCTCTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTAGTGCGCAGATGACATATCTCTTATTATTTTTCTATTTTTGTTTCAAGTTATATGATCGAATTCTTCGAAAATTGAATTTTCTTGAATTTTTTACTTCAAAAACTCACAGTTTCCAAAAGTTCTAAAATATCTACAAWTTTTTTGAAACTCAATATCTGTTTTGAATTCTCTTCATTCCGACTTACCAGTGTACGGTACCTCCACTCGCTTAAAATTAGCAATCAATTCTTCCTCTTCCTCCTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15609</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>427012</contig_pos>
        <strand>+</strand>
        <context>CCTATTTTTT[A/T]GAGTGTAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTTTCTGATTTCAGCTGTTCGAGATTTGCCGAACATTCCTATTTTTT</left_flank>
        <right_flank>GAGTGTAAATTTCAAAGAAAATGCCCTTCAGAAAGAGAAAAAGAATGAGA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTTCAAAAAACAAATAAGGGGGGACCCTTATGTGATTTTTTTCGATCAAAAAATTTTTTTCGAGTTTTTTTAAAAAATATTTTTTGATCAAACAGACAAACAGTCCAAAAAGCACAAAAAAATATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTACGCTAATAACGTAACTATCAATTTTCAGAGATTTTTCAGAATTTAAAAACATTTAGAAACAGAAAGTTTTCGAAACATTTTGAAGTTTTAATTTGAGAAAACTTTGAATTTTGAGATAAAATTTGCTCTAGTGATCTGAAGTTTTGATTTTTAGAATTAAAGTTTGAACTAATTCCGAAATTTCAAGTTTTTGGATTGCGAAATTCTAAAAAAATGAATTTGAATTTTTTCTGATTTCAGCTGTTCGAGATTTGCCGAACATTCCTATTTTTTAGAGTGTAAATTTCAAAGAAAATGCCCTTCAGAAAGAGAAAAAGAATGAGAAAATGGATGTGAAAAAAGAATAAGGGGAAAAAGAGAAAAAGCAATAAATAAAAGAATAGAGAAATAAATAAAAATGAGGAATCGATGAGAAAAACAGCTAAGCAAGAAAATCAAGGATGGTGTTTAATGAAATTTGTTTATTAGTTTTTAATGATTTCCTGATTACGAAACAGTAGATTTTAAGAATTATTGAAAGAAATGAATTTTGAAGTAAAGGAAAACATTTCTAGAAATAAACATGGCGACATCCGGACAAACCGATCTACCGACCATTATTTCTGAATTTTAAAAAATTCAAAAGAATCAACGAATTAATTTATCGTAACTAATTATTGACAACTTGAAACAGTGAAAAAATTTTTCATTGTTTCCAAATATTCATTTTCCATTCAGAATGAACTGAAACTATATCAGACGATTGAATTTTGAGTTTCCTTTCTAAATTTTCCA</canonical>
            <polymorphic>AAAATTTCAAAAAACAAATAAGGGGGGACCCTTATGTGATTTTTTTCGATCAAAAAATTTTTTTCGAGTTTTTTTAAAAAATATTTTTTGATCAAACAGACAAACAGTCCAAAAAGCACAAAAAAATATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTACGCTAATAACGTAACTATCAATTTTCAGAGATTTTTCAGAATTTAAAAACATTTAGAAACAGAAAGTTTTCGAAACATTTTGAAGTTTTAATTTGAGAAAACTTTGAATTTTGAGATAAAATTTGCTCTAGTGATCTGAAGTTTTGATTTTTAGAATTAAAGTTTGAACTAATTCCGAAATTTCAAGTTTTTGGATTGCGAAATTCTAAAAAAATGAATTTGAATTTTTTCTGATTTCAGCTGTTCGAGATTTGCCGAACATTCCTATTTTTTWGAGTGTAAATTTCAAAGAAAATGCCCTTCAGAAAGAGAAAAAGAATGAGAAAATGGATGTGAAAAAAGAATAAGGGGAAAAAGAGAAAAAGCAATAAATAAAAGAATAGAGAAATAAATAAAAATGAGGAATCGATGAGAAAAACAGCTAAGCAAGAAAATCAAGGATGGTGTTTAATGAAATTTGTTTATTAGTTTTTAATGATTTCCTGATTACGAAACAGTAGATTTTAAGAATTATTGAAAGAAATGAATTTTGAAGTAAAGGAAAACATTTCTAGAAATAAACATGGCGACATCCGGACAAACCGATCTACCGACCATTATTTCTGAATTTTAAAAAATTCAAAAGAATCAACGAATTAATTTATCGTAACTAATTATTGACAACTTGAAACAGTGAAAAAATTTTTCATTGTTTCCAAATATTCATTTTCCATTCAGAATGAACTGAAACTATATCAGACGATTGAATTTTGAGTTTCCTTTCTAAATTTTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATTTCAAGTTTTTGGATTG</pcr_primer_p1>
		<pcr_primer_p2>TAGCTGTTTTTCTCATCGATTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAATTTCAAGTTTTTGGATTGCGAAATTCTAAAAAAATGAATTTGAATTTTTTCTGATTTCAGCTGTTCGAGATTTGCCGAACATTCCTATTTTTTAGAGTGTAAATTTCAAAGAAAATGCCCTTCAGAAAGAGAAAAAGAATGAGAAAATGGATGTGAAAAAAGAATAAGGGGAAAAAGAGAAAAAGCAATAAATAAAAGAATAGAGAAATAAATAAAAATGAGGAATCGATGAGAAAAACAGCTA</canonical_amplicon>
		<polymorphic_amplicon>GAAATTTCAAGTTTTTGGATTGCGAAATTCTAAAAAAATGAATTTGAATTTTTTCTGATTTCAGCTGTTCGAGATTTGCCGAACATTCCTATTTTTTWGAGTGTAAATTTCAAAGAAAATGCCCTTCAGAAAGAGAAAAAGAATGAGAAAATGGATGTGAAAAAAGAATAAGGGGAAAAAGAGAAAAAGCAATAAATAAAAGAATAGAGAAATAAATAAAAATGAGGAATCGATGAGAAAAACAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15610</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>426810</contig_pos>
        <strand>+</strand>
        <context>GAAAGTTTTC[A/G]AAACATTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCAGAGATTTTTCAGAATTTAAAAACATTTAGAAACAGAAAGTTTTC</left_flank>
        <right_flank>AAACATTTTGAAGTTTTAATTTGAGAAAACTTTGAATTTTGAGATAAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGACAAGAGAGGAAGTTGAAACATTTAAAAATGGGAAAATTGAAATTTCAGACAATTTTTTAAAATTCAATACAAATAGAATAGGCAAAATTTCTGAATAAAACTTATACTAATAACCATACTGGTAACGGGCCGGGCCGGGCTTTTTACCGAATTTAGAGGCCCGGCCCGGCTCGGCAGGCCTCTCATTCGACAAGTTTTGAAAATTTCAAAAAACAAATAAGGGGGGACCCTTATGTGATTTTTTTCGATCAAAAAATTTTTTTCGAGTTTTTTTAAAAAATATTTTTTGATCAAACAGACAAACAGTCCAAAAAGCACAAAAAAATATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTACGCTAATAACGTAACTATCAATTTTCAGAGATTTTTCAGAATTTAAAAACATTTAGAAACAGAAAGTTTTCGAAACATTTTGAAGTTTTAATTTGAGAAAACTTTGAATTTTGAGATAAAATTTGCTCTAGTGATCTGAAGTTTTGATTTTTAGAATTAAAGTTTGAACTAATTCCGAAATTTCAAGTTTTTGGATTGCGAAATTCTAAAAAAATGAATTTGAATTTTTTCTGATTTCAGCTGTTCGAGATTTGCCGAACATTCCTATTTTTTAGAGTGTAAATTTCAAAGAAAATGCCCTTCAGAAAGAGAAAAAGAATGAGAAAATGGATGTGAAAAAAGAATAAGGGGAAAAAGAGAAAAAGCAATAAATAAAAGAATAGAGAAATAAATAAAAATGAGGAATCGATGAGAAAAACAGCTAAGCAAGAAAATCAAGGATGGTGTTTAATGAAATTTGTTTATTAGTTTTTAATGATTTCCTGATTACGAAACAGTAGATTTTAAGAATTATTGAAAGAAATGAATTTTGAAGTAAAGGAAAACATTTCTAGAAATAAACATGGCGACAT</canonical>
            <polymorphic>AGACAAGAGAGGAAGTTGAAACATTTAAAAATGGGAAAATTGAAATTTCAGACAATTTTTTAAAATTCAATACAAATAGAATAGGCAAAATTTCTGAATAAAACTTATACTAATAACCATACTGGTAACGGGCCGGGCCGGGCTTTTTACCGAATTTAGAGGCCCGGCCCGGCTCGGCAGGCCTCTCATTCGACAAGTTTTGAAAATTTCAAAAAACAAATAAGGGGGGACCCTTATGTGATTTTTTTCGATCAAAAAATTTTTTTCGAGTTTTTTTAAAAAATATTTTTTGATCAAACAGACAAACAGTCCAAAAAGCACAAAAAAATATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTACGCTAATAACGTAACTATCAATTTTCAGAGATTTTTCAGAATTTAAAAACATTTAGAAACAGAAAGTTTTCRAAACATTTTGAAGTTTTAATTTGAGAAAACTTTGAATTTTGAGATAAAATTTGCTCTAGTGATCTGAAGTTTTGATTTTTAGAATTAAAGTTTGAACTAATTCCGAAATTTCAAGTTTTTGGATTGCGAAATTCTAAAAAAATGAATTTGAATTTTTTCTGATTTCAGCTGTTCGAGATTTGCCGAACATTCCTATTTTTTAGAGTGTAAATTTCAAAGAAAATGCCCTTCAGAAAGAGAAAAAGAATGAGAAAATGGATGTGAAAAAAGAATAAGGGGAAAAAGAGAAAAAGCAATAAATAAAAGAATAGAGAAATAAATAAAAATGAGGAATCGATGAGAAAAACAGCTAAGCAAGAAAATCAAGGATGGTGTTTAATGAAATTTGTTTATTAGTTTTTAATGATTTCCTGATTACGAAACAGTAGATTTTAAGAATTATTGAAAGAAATGAATTTTGAAGTAAAGGAAAACATTTCTAGAAATAAACATGGCGACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>232 191 175 165 161 58 18</canonical_bands>
                <polymorphic_bands>407 191 165 161 58 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAGTCCAAAAAGCACAAA</pcr_primer_p1>
		<pcr_primer_p2>GCAAATTTTATCTCAAAATTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACAGTCCAAAAAGCACAAAAAAATATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTACGCTAATAACGTAACTATCAATTTTCAGAGATTTTTCAGAATTTAAAAACATTTAGAAACAGAAAGTTTTCGAAACATTTTGAAGTTTTAATTTGAGAAAACTTTGAATTTTGAGATAAAATTTGC</canonical_amplicon>
		<polymorphic_amplicon>AACAGTCCAAAAAGCACAAAAAAATATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTACGCTAATAACGTAACTATCAATTTTCAGAGATTTTTCAGAATTTAAAAACATTTAGAAACAGAAAGTTTTCRAAACATTTTGAAGTTTTAATTTGAGAAAACTTTGAATTTTGAGATAAAATTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15611</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>426787</contig_pos>
        <strand>+</strand>
        <context>GAATTTAAAA[A/T]CATTTAGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TACGCTAATAACGTAACTATCAATTTTCAGAGATTTTTCAGAATTTAAAA</left_flank>
        <right_flank>CATTTAGAAACAGAAAGTTTTCGAAACATTTTGAAGTTTTAATTTGAGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAATTTATAAAAATTAAAGAGAGACAAGAGAGGAAGTTGAAACATTTAAAAATGGGAAAATTGAAATTTCAGACAATTTTTTAAAATTCAATACAAATAGAATAGGCAAAATTTCTGAATAAAACTTATACTAATAACCATACTGGTAACGGGCCGGGCCGGGCTTTTTACCGAATTTAGAGGCCCGGCCCGGCTCGGCAGGCCTCTCATTCGACAAGTTTTGAAAATTTCAAAAAACAAATAAGGGGGGACCCTTATGTGATTTTTTTCGATCAAAAAATTTTTTTCGAGTTTTTTTAAAAAATATTTTTTGATCAAACAGACAAACAGTCCAAAAAGCACAAAAAAATATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTACGCTAATAACGTAACTATCAATTTTCAGAGATTTTTCAGAATTTAAAAACATTTAGAAACAGAAAGTTTTCGAAACATTTTGAAGTTTTAATTTGAGAAAACTTTGAATTTTGAGATAAAATTTGCTCTAGTGATCTGAAGTTTTGATTTTTAGAATTAAAGTTTGAACTAATTCCGAAATTTCAAGTTTTTGGATTGCGAAATTCTAAAAAAATGAATTTGAATTTTTTCTGATTTCAGCTGTTCGAGATTTGCCGAACATTCCTATTTTTTAGAGTGTAAATTTCAAAGAAAATGCCCTTCAGAAAGAGAAAAAGAATGAGAAAATGGATGTGAAAAAAGAATAAGGGGAAAAAGAGAAAAAGCAATAAATAAAAGAATAGAGAAATAAATAAAAATGAGGAATCGATGAGAAAAACAGCTAAGCAAGAAAATCAAGGATGGTGTTTAATGAAATTTGTTTATTAGTTTTTAATGATTTCCTGATTACGAAACAGTAGATTTTAAGAATTATTGAAAGAAATGAATTTTGAAGTAAAGGAAAACATT</canonical>
            <polymorphic>TTAAATTTATAAAAATTAAAGAGAGACAAGAGAGGAAGTTGAAACATTTAAAAATGGGAAAATTGAAATTTCAGACAATTTTTTAAAATTCAATACAAATAGAATAGGCAAAATTTCTGAATAAAACTTATACTAATAACCATACTGGTAACGGGCCGGGCCGGGCTTTTTACCGAATTTAGAGGCCCGGCCCGGCTCGGCAGGCCTCTCATTCGACAAGTTTTGAAAATTTCAAAAAACAAATAAGGGGGGACCCTTATGTGATTTTTTTCGATCAAAAAATTTTTTTCGAGTTTTTTTAAAAAATATTTTTTGATCAAACAGACAAACAGTCCAAAAAGCACAAAAAAATATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTACGCTAATAACGTAACTATCAATTTTCAGAGATTTTTCAGAATTTAAAAWCATTTAGAAACAGAAAGTTTTCGAAACATTTTGAAGTTTTAATTTGAGAAAACTTTGAATTTTGAGATAAAATTTGCTCTAGTGATCTGAAGTTTTGATTTTTAGAATTAAAGTTTGAACTAATTCCGAAATTTCAAGTTTTTGGATTGCGAAATTCTAAAAAAATGAATTTGAATTTTTTCTGATTTCAGCTGTTCGAGATTTGCCGAACATTCCTATTTTTTAGAGTGTAAATTTCAAAGAAAATGCCCTTCAGAAAGAGAAAAAGAATGAGAAAATGGATGTGAAAAAAGAATAAGGGGAAAAAGAGAAAAAGCAATAAATAAAAGAATAGAGAAATAAATAAAAATGAGGAATCGATGAGAAAAACAGCTAAGCAAGAAAATCAAGGATGGTGTTTAATGAAATTTGTTTATTAGTTTTTAATGATTTCCTGATTACGAAACAGTAGATTTTAAGAATTATTGAAAGAAATGAATTTTGAAGTAAAGGAAAACATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAGACAAACAGTCCAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTCAAAATTCAAAGTTTTCTCAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AACAGACAAACAGTCCAAAAAGCACAAAAAAATATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTACGCTAATAACGTAACTATCAATTTTCAGAGATTTTTCAGAATTTAAAAACATTTAGAAACAGAAAGTTTTCGAAACATTTTGAAGTTTTAATTTGAGAAAACTTTGAATTTTGAG</canonical_amplicon>
		<polymorphic_amplicon>AACAGACAAACAGTCCAAAAAGCACAAAAAAATATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTACGCTAATAACGTAACTATCAATTTTCAGAGATTTTTCAGAATTTAAAAWCATTTAGAAACAGAAAGTTTTCGAAACATTTTGAAGTTTTAATTTGAGAAAACTTTGAATTTTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15612</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>536060</contig_pos>
        <strand></strand>
        <context>tttaattaat[T/C]tacctcgatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTTTTGAAACAGTTTTGGTAGACTGGTCAAACGTTTGCTTTTAATTAAT</left_flank>
        <right_flank>TACCTCGATTCCTGTAAGGGGTATAAAAAAGTGGCCAACTAAAGAAATAT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCACCAACATTTTATCAATTAAAAAACTTTTGATATCTTTCATGGAAAGTGAGATAATTAAGCTCAAACAAGATGACGTTCTATCAGAGGGAATGAAAGCAGGAATAAAAATGGGAATGTCAATTTTCCAACTTTCCAAACTTTTCTCAAACTTTTGGAACAGTAAAAAATCTAGGACTTTCCATATCTTTTTGTCCCTTATATACCGCCTATATGAACTTCCAAAAACCGACATGAACGACGTCACCAAATCACTATTCTTATCAGTCTATCATAGTTTTTCTTATATTTTCCTTTATTTTTTATCTAAAGTAGGAGAGATAGACAATTAAAAAAGAGATAGAAAGATCAGAAAAACTATCAAATATACGAATTTTTGATTTTGCTTTTTATATTATTTTTTTGTGGTTTTCAAGGCCGAATTTGAGGGAGATTTGTTTAAAAATTGATTTTTGAAACAGTTTTGGTAGACTGGTCAAACGTTTGCTTTTAATTAATTTACCTCGATTCCTGTAAGGGGTATAAAAAAGTGGCCAACTAAAGAAATATTTTTGATAAAATGATGAACATTTATCAGTGGAAAGGTTTCTGATATCTTTAACAAAAACTGAAATAAATTGAGTCGAAGTAAACGCTTTGAAAAATACTTAAAAATCAATACAAGAAAACAATAGGAATTTCCCGGAAGAATTGAATTTGAGAAAAATATGCAGGAGATGATTGAAGATTGGAAATGTCTACAATTAACCCAAAAAATAACTTTCTGGAACAGCATATTTTTTGTGATGAAAAACATCAGGAATTTTCGTAATCATTCCTTTTGAAATTCTTCAAAATTTTCTAATTTTTGACTAACATCTGCATATTTTAAAATAAATTTTACGAAGTTTCAGAAGACTGAAATAAAATATCGACAAGATCGAAAAAGGTCTGGAACTTTAAACCTAAAAAACTTTTTGAAACTGAATTTTTTGTCATAAAGCTACAAATTATGGAAAA</canonical>
            <polymorphic>ATCACCAACATTTTATCAATTAAAAAACTTTTGATATCTTTCATGGAAAGTGAGATAATTAAGCTCAAACAAGATGACGTTCTATCAGAGGGAATGAAAGCAGGAATAAAAATGGGAATGTCAATTTTCCAACTTTCCAAACTTTTCTCAAACTTTTGGAACAGTAAAAAATCTAGGACTTTCCATATCTTTTTGTCCCTTATATACCGCCTATATGAACTTCCAAAAACCGACATGAACGACGTCACCAAATCACTATTCTTATCAGTCTATCATAGTTTTTCTTATATTTTCCTTTATTTTTTATCTAAAGTAGGAGAGATAGACAATTAAAAAAGAGATAGAAAGATCAGAAAAACTATCAAATATACGAATTTTTGATTTTGCTTTTTATATTATTTTTTTGTGGTTTTCAAGGCCGAATTTGAGGGAGATTTGTTTAAAAATTGATTTTTGAAACAGTTTTGGTAGACTGGTCAAACGTTTGCTTTTAATTAATYTACCTCGATTCCTGTAAGGGGTATAAAAAAGTGGCCAACTAAAGAAATATTTTTGATAAAATGATGAACATTTATCAGTGGAAAGGTTTCTGATATCTTTAACAAAAACTGAAATAAATTGAGTCGAAGTAAACGCTTTGAAAAATACTTAAAAATCAATACAAGAAAACAATAGGAATTTCCCGGAAGAATTGAATTTGAGAAAAATATGCAGGAGATGATTGAAGATTGGAAATGTCTACAATTAACCCAAAAAATAACTTTCTGGAACAGCATATTTTTTGTGATGAAAAACATCAGGAATTTTCGTAATCATTCCTTTTGAAATTCTTCAAAATTTTCTAATTTTTGACTAACATCTGCATATTTTAAAATAAATTTTACGAAGTTTCAGAAGACTGAAATAAAATATCGACAAGATCGAAAAAGGTCTGGAACTTTAAACCTAAAAAACTTTTTGAAACTGAATTTTTTGTCATAAAGCTACAAATTATGGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>205 120 90 66 60 59 49 48 48 45 39 33 24 23 22 17 13 12 10 8 5 4</canonical_bands>
                <polymorphic_bands>205 124 90 66 60 59 49 48 48 45 39 33 24 23 22 17 13 12 10 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGAGATTTGTTTAAAAATTGAT</pcr_primer_p1>
		<pcr_primer_p2>TTCCTATTGTTTTCTTGTATTGATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGGAGATTTGTTTAAAAATTGATTTTTGAAACAGTTTTGGTAGACTGGTCAAACGTTTGCTTTTAATTAATTTACCTCGATTCCTGTAAGGGGTATAAAAAAGTGGCCAACTAAAGAAATATTTTTGATAAAATGATGAACATTTATCAGTGGAAAGGTTTCTGATATCTTTAACAAAAACTGAAATAAATTGAGTCGAAGTAAACGCTTTGAAAAATACTTAAAAATCAATACAAGAAAACAATAGGAA</canonical_amplicon>
		<polymorphic_amplicon>GGGAGATTTGTTTAAAAATTGATTTTTGAAACAGTTTTGGTAGACTGGTCAAACGTTTGCTTTTAATTAATYTACCTCGATTCCTGTAAGGGGTATAAAAAAGTGGCCAACTAAAGAAATATTTTTGATAAAATGATGAACATTTATCAGTGGAAAGGTTTCTGATATCTTTAACAAAAACTGAAATAAATTGAGTCGAAGTAAACGCTTTGAAAAATACTTAAAAATCAATACAAGAAAACAATAGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15613</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>612103</contig_pos>
        <strand>+</strand>
        <context>TTCTCAAAAA[A/G]TCTTTGTATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAACATATGAAAATTTCAGCATTTTTCAGTAATCAAAAAATTCTCAAAAA</left_flank>
        <right_flank>TCTTTGTATTCAAAAATTGCAATGTTAAAAGTTCTATGTCAAATTCGAAT</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAATTCGGATAGCGTTCTATTAGAGTGTTTACGGTATATAACTTGTGATAAACACATTTTTAACATTTGAAAATTAATAAGTTAGAACAGAAAAAATTGAGTTTTTCTGAATATCAAAATTTCAGCTCTCAATTCTTTTTTCATCATTTTCAATTTTCAAAATGAATTCAAGAATAATTTTAAAGAATTCCTAATCTTTCGAAAAAAAAATTTATCATAAACTCTTGAAGAAAAAATTTGAATATAACAACTACAGTGTTCAAGGACTAAAGTATCGTAATTTCGAAAATCAAAACAAAACCATGAAACTGTGATTTTTCAATTTTTTTTTCAAAAATAAGTTTTTTGTTTCGTTATTTTGAGAAATTTTAACTTTCCTTCAAAAAGTGTTCCCATTCGCATCAATCTTGGAATTTTGCAACACTACAAACTGTGGATATTCGAAAGTGAACATATGAAAATTTCAGCATTTTTCAGTAATCAAAAAATTCTCAAAAAGTCTTTGTATTCAAAAATTGCAATGTTAAAAGTTCTATGTCAAATTCGAATCAAGAAGAACTGACAAATGTTAGAATCCAAAAACTAACACAAAAAATATGAAACTGTGAAAAATAATTTTTTCAGTTTTTTTCGAAAAAAAAAATTTCCTGTTCCACTATTTCAAGAAATTTGAATTACCTCCCGAAAAAATGGTTATCACATAAACACATAGATTTTCAAGCTCTAAAATTCCGGATGTCCCAAAGAATCGTTTCTTAAATTTTTTCAAATTTTTCCAGCACCAACAAACTCTCCTATTTCAAAGGTCCCCAATGCCTTATCTGGTTTGCCTATTGCACATTTTTTGGACTACAGTACGCCCTGGGAACTTATTTCACACTACAAAGAGATTCAATTTCTGACGAATACCTCCGAGAAGACGTCCTTCTTCGTTATAACGTAAATTTGACTGAAATTCCAGCCATGACGATTTTAGCCTACGATCCGACGGATGGATCG</canonical>
            <polymorphic>ACAATTCGGATAGCGTTCTATTAGAGTGTTTACGGTATATAACTTGTGATAAACACATTTTTAACATTTGAAAATTAATAAGTTAGAACAGAAAAAATTGAGTTTTTCTGAATATCAAAATTTCAGCTCTCAATTCTTTTTTCATCATTTTCAATTTTCAAAATGAATTCAAGAATAATTTTAAAGAATTCCTAATCTTTCGAAAAAAAAATTTATCATAAACTCTTGAAGAAAAAATTTGAATATAACAACTACAGTGTTCAAGGACTAAAGTATCGTAATTTCGAAAATCAAAACAAAACCATGAAACTGTGATTTTTCAATTTTTTTTTCAAAAATAAGTTTTTTGTTTCGTTATTTTGAGAAATTTTAACTTTCCTTCAAAAAGTGTTCCCATTCGCATCAATCTTGGAATTTTGCAACACTACAAACTGTGGATATTCGAAAGTGAACATATGAAAATTTCAGCATTTTTCAGTAATCAAAAAATTCTCAAAAARTCTTTGTATTCAAAAATTGCAATGTTAAAAGTTCTATGTCAAATTCGAATCAAGAAGAACTGACAAATGTTAGAATCCAAAAACTAACACAAAAAATATGAAACTGTGAAAAATAATTTTTTCAGTTTTTTTCGAAAAAAAAAATTTCCTGTTCCACTATTTCAAGAAATTTGAATTACCTCCCGAAAAAATGGTTATCACATAAACACATAGATTTTCAAGCTCTAAAATTCCGGATGTCCCAAAGAATCGTTTCTTAAATTTTTTCAAATTTTTCCAGCACCAACAAACTCTCCTATTTCAAAGGTCCCCAATGCCTTATCTGGTTTGCCTATTGCACATTTTTTGGACTACAGTACGCCCTGGGAACTTATTTCACACTACAAAGAGATTCAATTTCTGACGAATACCTCCGAGAAGACGTCCTTCTTCGTTATAACGTAAATTTGACTGAAATTCCAGCCATGACGATTTTAGCCTACGATCCGACGGATGGATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGTTTCGTTATTTTGAGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTGTTAGTTTTTGGATTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTGTTTCGTTATTTTGAGAAATTTTAACTTTCCTTCAAAAAGTGTTCCCATTCGCATCAATCTTGGAATTTTGCAACACTACAAACTGTGGATATTCGAAAGTGAACATATGAAAATTTCAGCATTTTTCAGTAATCAAAAAATTCTCAAAAAGTCTTTGTATTCAAAAATTGCAATGTTAAAAGTTCTATGTCAAATTCGAATCAAGAAGAACTGACAAATGTTAGAATCCAAAAACTAACACAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTGTTTCGTTATTTTGAGAAATTTTAACTTTCCTTCAAAAAGTGTTCCCATTCGCATCAATCTTGGAATTTTGCAACACTACAAACTGTGGATATTCGAAAGTGAACATATGAAAATTTCAGCATTTTTCAGTAATCAAAAAATTCTCAAAAARTCTTTGTATTCAAAAATTGCAATGTTAAAAGTTCTATGTCAAATTCGAATCAAGAAGAACTGACAAATGTTAGAATCCAAAAACTAACACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15614</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>614501</contig_pos>
        <strand>+</strand>
        <context>GAAATGTTTG[C/T]TTTGGAAACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTAGTTTAGTGAATTCCAGATGGTTGAAGCTATAAGCAAGAAATGTTTG</left_flank>
        <right_flank>TTTGGAAACAATGATTTGACAGGAAAAATAGAAGGGTAATATTTTGTCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTGTTTTTTTGAAAATTTCAAAACTAGTGAAATGACGGGCCCGCCGGGCCGGGCCTCAAAAATTCCGGAAAAAGCCCGGCCCGGCCCGTTACAAGTATGCTTTTGACTTTTTTCAGGTCTAATCAGAAAAGGCCTCAAAATCCAGAATTCTCAACAAACGTCTTCAAAAGTTTACGCCACTACGGTGAATCCAACTTCCACTGCTCCTTTAAATGGATGATTAAATTTTGCAGTTTTTTTAATAATCTTTTTTTTTGTTTCAACACTATTTCAAATATTTCTGAAATTTTTAATAGTTGTTTATTTTGATCTTTGATTGTGAGAACATAAAGTTTCACAGAATGTCTCTTTTTTCCAGATGTTTCTAACTAAACATCTGTTTTAAATTTTTCTAGAAAAATTCGTTAAAATAAATTCTTCAAAAAATAAATAAACTAACATACGTATTTTAGTTTAGTGAATTCCAGATGGTTGAAGCTATAAGCAAGAAATGTTTGTTTTGGAAACAATGATTTGACAGGAAAAATAGAAGGGTAATATTTTGTCAACGCTTAGTGTCTGAAAGAAACTATTGTATTTTTTGAGAGTTTGATGGAACGGAAAACTTTTGTTGTTGTTATTTTTGGATTGAAATGTCGATTTTAACAGTGAAAAAAAAACAAAAATTGAAAAACTTGAAACAATTCTAATCCTATCCTCGTTGTCAACGGACAATAATGTTAATTTCACAAGCCAAAAGAAATTAAAACAGAAAAAATACAACATTTGGGAAAATCAGATACTATTAGAACTGACCCATTTTTCAGAGATTTCGAAGGAATCAGAAACAGAAAAAAATATTTCACCAAAATTTCAAAAAACGGAAAATTGATAGAGCTTCATTTTTGTAGTTGAACCTTTTTTTTGAAAAAATTCAAAAAATCGAAATAATGTGTTTTTCAAAGTGGTACATGTCTCATTTCAGGGCAAATTTTTGCATTTTCAGCGATTTCCAAGGA</canonical>
            <polymorphic>ATGTGTTTTTTTGAAAATTTCAAAACTAGTGAAATGACGGGCCCGCCGGGCCGGGCCTCAAAAATTCCGGAAAAAGCCCGGCCCGGCCCGTTACAAGTATGCTTTTGACTTTTTTCAGGTCTAATCAGAAAAGGCCTCAAAATCCAGAATTCTCAACAAACGTCTTCAAAAGTTTACGCCACTACGGTGAATCCAACTTCCACTGCTCCTTTAAATGGATGATTAAATTTTGCAGTTTTTTTAATAATCTTTTTTTTTGTTTCAACACTATTTCAAATATTTCTGAAATTTTTAATAGTTGTTTATTTTGATCTTTGATTGTGAGAACATAAAGTTTCACAGAATGTCTCTTTTTTCCAGATGTTTCTAACTAAACATCTGTTTTAAATTTTTCTAGAAAAATTCGTTAAAATAAATTCTTCAAAAAATAAATAAACTAACATACGTATTTTAGTTTAGTGAATTCCAGATGGTTGAAGCTATAAGCAAGAAATGTTTGYTTTGGAAACAATGATTTGACAGGAAAAATAGAAGGGTAATATTTTGTCAACGCTTAGTGTCTGAAAGAAACTATTGTATTTTTTGAGAGTTTGATGGAACGGAAAACTTTTGTTGTTGTTATTTTTGGATTGAAATGTCGATTTTAACAGTGAAAAAAAAACAAAAATTGAAAAACTTGAAACAATTCTAATCCTATCCTCGTTGTCAACGGACAATAATGTTAATTTCACAAGCCAAAAGAAATTAAAACAGAAAAAATACAACATTTGGGAAAATCAGATACTATTAGAACTGACCCATTTTTCAGAGATTTCGAAGGAATCAGAAACAGAAAAAAATATTTCACCAAAATTTCAAAAAACGGAAAATTGATAGAGCTTCATTTTTGTAGTTGAACCTTTTTTTTGAAAAAATTCAAAAAATCGAAATAATGTGTTTTTCAAAGTGGTACATGTCTCATTTCAGGGCAAATTTTTGCATTTTCAGCGATTTCCAAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATCTTTGATTGTGAGAACATA</pcr_primer_p1>
		<pcr_primer_p2>CTAAGCGTTGACAAAATATTACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGATCTTTGATTGTGAGAACATAAAGTTTCACAGAATGTCTCTTTTTTCCAGATGTTTCTAACTAAACATCTGTTTTAAATTTTTCTAGAAAAATTCGTTAAAATAAATTCTTCAAAAAATAAATAAACTAACATACGTATTTTAGTTTAGTGAATTCCAGATGGTTGAAGCTATAAGCAAGAAATGTTTGTTTTGGAAACAATGATTTGACAGGAAAAATAGAAGGGTAATATTTTGTCAACGCTTAG</canonical_amplicon>
		<polymorphic_amplicon>TGATCTTTGATTGTGAGAACATAAAGTTTCACAGAATGTCTCTTTTTTCCAGATGTTTCTAACTAAACATCTGTTTTAAATTTTTCTAGAAAAATTCGTTAAAATAAATTCTTCAAAAAATAAATAAACTAACATACGTATTTTAGTTTAGTGAATTCCAGATGGTTGAAGCTATAAGCAAGAAATGTTTGYTTTGGAAACAATGATTTGACAGGAAAAATAGAAGGGTAATATTTTGTCAACGCTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15615</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>614335</contig_pos>
        <strand>+</strand>
        <context>AGAACATAAA[A/G]TTTCACAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAATTTTTAATAGTTGTTTATTTTGATCTTTGATTGTGAGAACATAAA</left_flank>
        <right_flank>TTTCACAGAATGTCTCTTTTTTCCAGATGTTTCTAACTAAACATCTGTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCCGGTGTCAAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTTTTCCATTTTTTTTTTCGTATTTCGGATTGTTTGTCTGTCTGATCAAATAAGATCGAAAAACTCGAAAAAAAATTTTTGGTCGAAAAAAATCACATAAGGGTCCCCTTATGTGTTTTTTTGAAAATTTCAAAACTAGTGAAATGACGGGCCCGCCGGGCCGGGCCTCAAAAATTCCGGAAAAAGCCCGGCCCGGCCCGTTACAAGTATGCTTTTGACTTTTTTCAGGTCTAATCAGAAAAGGCCTCAAAATCCAGAATTCTCAACAAACGTCTTCAAAAGTTTACGCCACTACGGTGAATCCAACTTCCACTGCTCCTTTAAATGGATGATTAAATTTTGCAGTTTTTTTAATAATCTTTTTTTTTGTTTCAACACTATTTCAAATATTTCTGAAATTTTTAATAGTTGTTTATTTTGATCTTTGATTGTGAGAACATAAAGTTTCACAGAATGTCTCTTTTTTCCAGATGTTTCTAACTAAACATCTGTTTTAAATTTTTCTAGAAAAATTCGTTAAAATAAATTCTTCAAAAAATAAATAAACTAACATACGTATTTTAGTTTAGTGAATTCCAGATGGTTGAAGCTATAAGCAAGAAATGTTTGTTTTGGAAACAATGATTTGACAGGAAAAATAGAAGGGTAATATTTTGTCAACGCTTAGTGTCTGAAAGAAACTATTGTATTTTTTGAGAGTTTGATGGAACGGAAAACTTTTGTTGTTGTTATTTTTGGATTGAAATGTCGATTTTAACAGTGAAAAAAAAACAAAAATTGAAAAACTTGAAACAATTCTAATCCTATCCTCGTTGTCAACGGACAATAATGTTAATTTCACAAGCCAAAAGAAATTAAAACAGAAAAAATACAACATTTGGGAAAATCAGATACTATTAGAACTGACCCATTTTTCAGAGATTTCGAAGGAATCAGAAACAGAA</canonical>
            <polymorphic>GCCCGGTGTCAAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTTTTCCATTTTTTTTTTCGTATTTCGGATTGTTTGTCTGTCTGATCAAATAAGATCGAAAAACTCGAAAAAAAATTTTTGGTCGAAAAAAATCACATAAGGGTCCCCTTATGTGTTTTTTTGAAAATTTCAAAACTAGTGAAATGACGGGCCCGCCGGGCCGGGCCTCAAAAATTCCGGAAAAAGCCCGGCCCGGCCCGTTACAAGTATGCTTTTGACTTTTTTCAGGTCTAATCAGAAAAGGCCTCAAAATCCAGAATTCTCAACAAACGTCTTCAAAAGTTTACGCCACTACGGTGAATCCAACTTCCACTGCTCCTTTAAATGGATGATTAAATTTTGCAGTTTTTTTAATAATCTTTTTTTTTGTTTCAACACTATTTCAAATATTTCTGAAATTTTTAATAGTTGTTTATTTTGATCTTTGATTGTGAGAACATAAARTTTCACAGAATGTCTCTTTTTTCCAGATGTTTCTAACTAAACATCTGTTTTAAATTTTTCTAGAAAAATTCGTTAAAATAAATTCTTCAAAAAATAAATAAACTAACATACGTATTTTAGTTTAGTGAATTCCAGATGGTTGAAGCTATAAGCAAGAAATGTTTGTTTTGGAAACAATGATTTGACAGGAAAAATAGAAGGGTAATATTTTGTCAACGCTTAGTGTCTGAAAGAAACTATTGTATTTTTTGAGAGTTTGATGGAACGGAAAACTTTTGTTGTTGTTATTTTTGGATTGAAATGTCGATTTTAACAGTGAAAAAAAAACAAAAATTGAAAAACTTGAAACAATTCTAATCCTATCCTCGTTGTCAACGGACAATAATGTTAATTTCACAAGCCAAAAGAAATTAAAACAGAAAAAATACAACATTTGGGAAAATCAGATACTATTAGAACTGACCCATTTTTCAGAGATTTCGAAGGAATCAGAAACAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTTTCAACACTATTTCAA</pcr_primer_p1>
		<pcr_primer_p2>AACATTTCTTGCTTATAGCTTCA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTTTCAACACTATTTCAAATATTTCTGAAATTTTTAATAGTTGTTTATTTTGATCTTTGATTGTGAGAACATAAAGTTTCACAGAATGTCTCTTTTTTCCAGATGTTTCTAACTAAACATCTGTTTTAAATTTTTCTAGAAAAATTCGTTAAAATAAATTCTTCAAAAAATAAATAAACTAACATACGTATTTTAGTTTAGTGAATTCCAGATGGTTGAAGCTATAAGCAAGAAATGTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTTTCAACACTATTTCAAATATTTCTGAAATTTTTAATAGTTGTTTATTTTGATCTTTGATTGTGAGAACATAAARTTTCACAGAATGTCTCTTTTTTCCAGATGTTTCTAACTAAACATCTGTTTTAAATTTTTCTAGAAAAATTCGTTAAAATAAATTCTTCAAAAAATAAATAAACTAACATACGTATTTTAGTTTAGTGAATTCCAGATGGTTGAAGCTATAAGCAAGAAATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15628</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>640698</contig_pos>
        <strand>+</strand>
        <context>TGAGCTACCC[C/T]GTTGTCTTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACATTGATATCAACGATACTCCGTAAGAGTTGAAGCTCTTGAGCTACCC</left_flank>
        <right_flank>GTTGTCTTGGCTAACTCAAGAGGTTCATTGTTCAGAACATTAATCTTACA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGACACAACAACTTACGAAGTAACTCATTGAAACTGATTTTCTCATGATAATGAAACTGGAATGTAGGCTTAATGAAACTGCAAAAATAAGAATGACAGAATATTTGAAATCCCAAAAGTCCGTATCAACCGCACAACAAACAATTGAAATGGAGTTTTATGGAAATGTATCAAAACAATGCAACTTTGAAACTGGCTGACAATGTTCTAAGCTTTGAAGGAAAGTTCGCGAAACAGAAAAAATAGTGAACTTCGACGGATTTTTGTTTTACACCCTCCAAAGTTTTCAAAGTGATAGGAATCTTGATAGCTGAGCTCCTGAAAATGGTACAAAAATTTACTGAAAAATACTTTTTTTGTATTTTATTGACCGGTACTGTATATGCCCTCAAGAATGTCTATCAAACTGCTCATTGTAATTTGTGTGTCTAATGAAACTGGAAAAAATAACATTGATATCAACGATACTCCGTAAGAGTTGAAGCTCTTGAGCTACCCCGTTGTCTTGGCTAACTCAAGAGGTTCATTGTTCAGAACATTAATCTTACAAATTTCTCAAAGTTTTACACTATCGCAATCTAATCGCTAAAATCCCAGGAGTGTGTATGGATCGCAGAACAAACAATATCCACGTTCACACAAAAGAATGTGGAACATTTTGAAGCTTGAGCTACGCGGTCGCGAATTAAAGGTCATTACCTCAGAGACAACATTCTGAAACGGGTAAATTTTCTGGTTTAGGTTTATTTATGTATGTCGTTTGATCTAGATTGAAGGTCGCTGCTAGTATGATCTAGGTGCTCATAGTCCATTAATGAACTAGTTGAAACCGCCTAGATATCAGATATGTTGACTGATAGATGAACTATAAGACCTCTTTTTCAGAACTTACCGGATTCAAAATCATCTGAAGACACGAGAAAACGACCAGATTTGCCACATTAGCCATCATCAAGACAGTGTAGTTTCCGAAGTTTCTGGATGCGTCGGAGAAGATGA</canonical>
            <polymorphic>CGGACACAACAACTTACGAAGTAACTCATTGAAACTGATTTTCTCATGATAATGAAACTGGAATGTAGGCTTAATGAAACTGCAAAAATAAGAATGACAGAATATTTGAAATCCCAAAAGTCCGTATCAACCGCACAACAAACAATTGAAATGGAGTTTTATGGAAATGTATCAAAACAATGCAACTTTGAAACTGGCTGACAATGTTCTAAGCTTTGAAGGAAAGTTCGCGAAACAGAAAAAATAGTGAACTTCGACGGATTTTTGTTTTACACCCTCCAAAGTTTTCAAAGTGATAGGAATCTTGATAGCTGAGCTCCTGAAAATGGTACAAAAATTTACTGAAAAATACTTTTTTTGTATTTTATTGACCGGTACTGTATATGCCCTCAAGAATGTCTATCAAACTGCTCATTGTAATTTGTGTGTCTAATGAAACTGGAAAAAATAACATTGATATCAACGATACTCCGTAAGAGTTGAAGCTCTTGAGCTACCCYGTTGTCTTGGCTAACTCAAGAGGTTCATTGTTCAGAACATTAATCTTACAAATTTCTCAAAGTTTTACACTATCGCAATCTAATCGCTAAAATCCCAGGAGTGTGTATGGATCGCAGAACAAACAATATCCACGTTCACACAAAAGAATGTGGAACATTTTGAAGCTTGAGCTACGCGGTCGCGAATTAAAGGTCATTACCTCAGAGACAACATTCTGAAACGGGTAAATTTTCTGGTTTAGGTTTATTTATGTATGTCGTTTGATCTAGATTGAAGGTCGCTGCTAGTATGATCTAGGTGCTCATAGTCCATTAATGAACTAGTTGAAACCGCCTAGATATCAGATATGTTGACTGATAGATGAACTATAAGACCTCTTTTTCAGAACTTACCGGATTCAAAATCATCTGAAGACACGAGAAAACGACCAGATTTGCCACATTAGCCATCATCAAGACAGTGTAGTTTCCGAAGTTTCTGGATGCGTCGGAGAAGATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTCAAGAATGTCTATCAAACTG</pcr_primer_p1>
		<pcr_primer_p2>GAACGTGGATATTGTTTGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTCAAGAATGTCTATCAAACTGCTCATTGTAATTTGTGTGTCTAATGAAACTGGAAAAAATAACATTGATATCAACGATACTCCGTAAGAGTTGAAGCTCTTGAGCTACCCCGTTGTCTTGGCTAACTCAAGAGGTTCATTGTTCAGAACATTAATCTTACAAATTTCTCAAAGTTTTACACTATCGCAATCTAATCGCTAAAATCCCAGGAGTGTGTATGGATCGCAGAACAAACAATATCCACGTTC</canonical_amplicon>
		<polymorphic_amplicon>CCTCAAGAATGTCTATCAAACTGCTCATTGTAATTTGTGTGTCTAATGAAACTGGAAAAAATAACATTGATATCAACGATACTCCGTAAGAGTTGAAGCTCTTGAGCTACCCYGTTGTCTTGGCTAACTCAAGAGGTTCATTGTTCAGAACATTAATCTTACAAATTTCTCAAAGTTTTACACTATCGCAATCTAATCGCTAAAATCCCAGGAGTGTGTATGGATCGCAGAACAAACAATATCCACGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15629</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>640772</contig_pos>
        <strand>+</strand>
        <context>TTTACACTAT[C/T]GCAATYTAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCATTGTTCAGAACATTAATCTTACAAATTTCTCAAAGTTTTACACTAT</left_flank>
        <right_flank>GCAATCTAATCGCTAAAATCCCAGGAGTGTGTATGGATCGCAGAACAAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAACTGCAAAAATAAGAATGACAGAATATTTGAAATCCCAAAAGTCCGTATCAACCGCACAACAAACAATTGAAATGGAGTTTTATGGAAATGTATCAAAACAATGCAACTTTGAAACTGGCTGACAATGTTCTAAGCTTTGAAGGAAAGTTCGCGAAACAGAAAAAATAGTGAACTTCGACGGATTTTTGTTTTACACCCTCCAAAGTTTTCAAAGTGATAGGAATCTTGATAGCTGAGCTCCTGAAAATGGTACAAAAATTTACTGAAAAATACTTTTTTTGTATTTTATTGACCGGTACTGTATATGCCCTCAAGAATGTCTATCAAACTGCTCATTGTAATTTGTGTGTCTAATGAAACTGGAAAAAATAACATTGATATCAACGATACTCCGTAAGAGTTGAAGCTCTTGAGCTACCCCGTTGTCTTGGCTAACTCAAGAGGTTCATTGTTCAGAACATTAATCTTACAAATTTCTCAAAGTTTTACACTATCGCAATCTAATCGCTAAAATCCCAGGAGTGTGTATGGATCGCAGAACAAACAATATCCACGTTCACACAAAAGAATGTGGAACATTTTGAAGCTTGAGCTACGCGGTCGCGAATTAAAGGTCATTACCTCAGAGACAACATTCTGAAACGGGTAAATTTTCTGGTTTAGGTTTATTTATGTATGTCGTTTGATCTAGATTGAAGGTCGCTGCTAGTATGATCTAGGTGCTCATAGTCCATTAATGAACTAGTTGAAACCGCCTAGATATCAGATATGTTGACTGATAGATGAACTATAAGACCTCTTTTTCAGAACTTACCGGATTCAAAATCATCTGAAGACACGAGAAAACGACCAGATTTGCCACATTAGCCATCATCAAGACAGTGTAGTTTCCGAAGTTTCTGGATGCGTCGGAGAAGATGAGCTTGACGAGTTCGGCATTGGTGAACAGCATTGCAAAGAATGCGACTACGTTCACCCAGGCGGTGATCTCCACC</canonical>
            <polymorphic>TGAAACTGCAAAAATAAGAATGACAGAATATTTGAAATCCCAAAAGTCCGTATCAACCGCACAACAAACAATTGAAATGGAGTTTTATGGAAATGTATCAAAACAATGCAACTTTGAAACTGGCTGACAATGTTCTAAGCTTTGAAGGAAAGTTCGCGAAACAGAAAAAATAGTGAACTTCGACGGATTTTTGTTTTACACCCTCCAAAGTTTTCAAAGTGATAGGAATCTTGATAGCTGAGCTCCTGAAAATGGTACAAAAATTTACTGAAAAATACTTTTTTTGTATTTTATTGACCGGTACTGTATATGCCCTCAAGAATGTCTATCAAACTGCTCATTGTAATTTGTGTGTCTAATGAAACTGGAAAAAATAACATTGATATCAACGATACTCCGTAAGAGTTGAAGCTCTTGAGCTACCCCGTTGTCTTGGCTAACTCAAGAGGTTCATTGTTCAGAACATTAATCTTACAAATTTCTCAAAGTTTTACACTATYGCAATCTAATCGCTAAAATCCCAGGAGTGTGTATGGATCGCAGAACAAACAATATCCACGTTCACACAAAAGAATGTGGAACATTTTGAAGCTTGAGCTACGCGGTCGCGAATTAAAGGTCATTACCTCAGAGACAACATTCTGAAACGGGTAAATTTTCTGGTTTAGGTTTATTTATGTATGTCGTTTGATCTAGATTGAAGGTCGCTGCTAGTATGATCTAGGTGCTCATAGTCCATTAATGAACTAGTTGAAACCGCCTAGATATCAGATATGTTGACTGATAGATGAACTATAAGACCTCTTTTTCAGAACTTACCGGATTCAAAATCATCTGAAGACACGAGAAAACGACCAGATTTGCCACATTAGCCATCATCAAGACAGTGTAGTTTCCGAAGTTTCTGGATGCGTCGGAGAAGATGAGCTTGACGAGTTCGGCATTGGTGAACAGCATTGCAAAGAATGCGACTACGTTCACCCAGGCGGTGATCTCCACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTCAAGAATGTCTATCAAACTG</pcr_primer_p1>
		<pcr_primer_p2>GAACGTGGATATTGTTTGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTCAAGAATGTCTATCAAACTGCTCATTGTAATTTGTGTGTCTAATGAAACTGGAAAAAATAACATTGATATCAACGATACTCCGTAAGAGTTGAAGCTCTTGAGCTACCCCGTTGTCTTGGCTAACTCAAGAGGTTCATTGTTCAGAACATTAATCTTACAAATTTCTCAAAGTTTTACACTATCGCAATCTAATCGCTAAAATCCCAGGAGTGTGTATGGATCGCAGAACAAACAATATCCACGTTC</canonical_amplicon>
		<polymorphic_amplicon>CCTCAAGAATGTCTATCAAACTGCTCATTGTAATTTGTGTGTCTAATGAAACTGGAAAAAATAACATTGATATCAACGATACTCCGTAAGAGTTGAAGCTCTTGAGCTACCCCGTTGTCTTGGCTAACTCAAGAGGTTCATTGTTCAGAACATTAATCTTACAAATTTCTCAAAGTTTTACACTATYGCAATCTAATCGCTAAAATCCCAGGAGTGTGTATGGATCGCAGAACAAACAATATCCACGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15630</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>640778</contig_pos>
        <strand>+</strand>
        <context>CTATYGCAAT[C/T]TAATCGCTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTCAGAACATTAATCTTACAAATTTCTCAAAGTTTTACACTATCGCAAT</left_flank>
        <right_flank>TAATCGCTAAAATCCCAGGAGTGTGTATGGATCGCAGAACAAACAATATC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCAAAAATAAGAATGACAGAATATTTGAAATCCCAAAAGTCCGTATCAACCGCACAACAAACAATTGAAATGGAGTTTTATGGAAATGTATCAAAACAATGCAACTTTGAAACTGGCTGACAATGTTCTAAGCTTTGAAGGAAAGTTCGCGAAACAGAAAAAATAGTGAACTTCGACGGATTTTTGTTTTACACCCTCCAAAGTTTTCAAAGTGATAGGAATCTTGATAGCTGAGCTCCTGAAAATGGTACAAAAATTTACTGAAAAATACTTTTTTTGTATTTTATTGACCGGTACTGTATATGCCCTCAAGAATGTCTATCAAACTGCTCATTGTAATTTGTGTGTCTAATGAAACTGGAAAAAATAACATTGATATCAACGATACTCCGTAAGAGTTGAAGCTCTTGAGCTACCCCGTTGTCTTGGCTAACTCAAGAGGTTCATTGTTCAGAACATTAATCTTACAAATTTCTCAAAGTTTTACACTATCGCAATCTAATCGCTAAAATCCCAGGAGTGTGTATGGATCGCAGAACAAACAATATCCACGTTCACACAAAAGAATGTGGAACATTTTGAAGCTTGAGCTACGCGGTCGCGAATTAAAGGTCATTACCTCAGAGACAACATTCTGAAACGGGTAAATTTTCTGGTTTAGGTTTATTTATGTATGTCGTTTGATCTAGATTGAAGGTCGCTGCTAGTATGATCTAGGTGCTCATAGTCCATTAATGAACTAGTTGAAACCGCCTAGATATCAGATATGTTGACTGATAGATGAACTATAAGACCTCTTTTTCAGAACTTACCGGATTCAAAATCATCTGAAGACACGAGAAAACGACCAGATTTGCCACATTAGCCATCATCAAGACAGTGTAGTTTCCGAAGTTTCTGGATGCGTCGGAGAAGATGAGCTTGACGAGTTCGGCATTGGTGAACAGCATTGCAAAGAATGCGACTACGTTCACCCAGGCGGTGATCTCCACCAAGGCA</canonical>
            <polymorphic>TGCAAAAATAAGAATGACAGAATATTTGAAATCCCAAAAGTCCGTATCAACCGCACAACAAACAATTGAAATGGAGTTTTATGGAAATGTATCAAAACAATGCAACTTTGAAACTGGCTGACAATGTTCTAAGCTTTGAAGGAAAGTTCGCGAAACAGAAAAAATAGTGAACTTCGACGGATTTTTGTTTTACACCCTCCAAAGTTTTCAAAGTGATAGGAATCTTGATAGCTGAGCTCCTGAAAATGGTACAAAAATTTACTGAAAAATACTTTTTTTGTATTTTATTGACCGGTACTGTATATGCCCTCAAGAATGTCTATCAAACTGCTCATTGTAATTTGTGTGTCTAATGAAACTGGAAAAAATAACATTGATATCAACGATACTCCGTAAGAGTTGAAGCTCTTGAGCTACCCCGTTGTCTTGGCTAACTCAAGAGGTTCATTGTTCAGAACATTAATCTTACAAATTTCTCAAAGTTTTACACTATCGCAATYTAATCGCTAAAATCCCAGGAGTGTGTATGGATCGCAGAACAAACAATATCCACGTTCACACAAAAGAATGTGGAACATTTTGAAGCTTGAGCTACGCGGTCGCGAATTAAAGGTCATTACCTCAGAGACAACATTCTGAAACGGGTAAATTTTCTGGTTTAGGTTTATTTATGTATGTCGTTTGATCTAGATTGAAGGTCGCTGCTAGTATGATCTAGGTGCTCATAGTCCATTAATGAACTAGTTGAAACCGCCTAGATATCAGATATGTTGACTGATAGATGAACTATAAGACCTCTTTTTCAGAACTTACCGGATTCAAAATCATCTGAAGACACGAGAAAACGACCAGATTTGCCACATTAGCCATCATCAAGACAGTGTAGTTTCCGAAGTTTCTGGATGCGTCGGAGAAGATGAGCTTGACGAGTTCGGCATTGGTGAACAGCATTGCAAAGAATGCGACTACGTTCACCCAGGCGGTGATCTCCACCAAGGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTCAAGAATGTCTATCAAACTG</pcr_primer_p1>
		<pcr_primer_p2>GAACGTGGATATTGTTTGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTCAAGAATGTCTATCAAACTGCTCATTGTAATTTGTGTGTCTAATGAAACTGGAAAAAATAACATTGATATCAACGATACTCCGTAAGAGTTGAAGCTCTTGAGCTACCCCGTTGTCTTGGCTAACTCAAGAGGTTCATTGTTCAGAACATTAATCTTACAAATTTCTCAAAGTTTTACACTATCGCAATCTAATCGCTAAAATCCCAGGAGTGTGTATGGATCGCAGAACAAACAATATCCACGTTC</canonical_amplicon>
		<polymorphic_amplicon>CCTCAAGAATGTCTATCAAACTGCTCATTGTAATTTGTGTGTCTAATGAAACTGGAAAAAATAACATTGATATCAACGATACTCCGTAAGAGTTGAAGCTCTTGAGCTACCCCGTTGTCTTGGCTAACTCAAGAGGTTCATTGTTCAGAACATTAATCTTACAAATTTCTCAAAGTTTTACACTATCGCAATYTAATCGCTAAAATCCCAGGAGTGTGTATGGATCGCAGAACAAACAATATCCACGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15631</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>640857</contig_pos>
        <strand>+</strand>
        <context>TGTGGAACAT[G/T]TTGAAGCTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGATCGCAGAACAAACAATATCCACGTTCACACAAAAGAATGTGGAACAT</left_flank>
        <right_flank>TTGAAGCTTGAGCTACGCGGTCGCGAATTAAAGGTCATTACCTCAGAGAC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGGAAATGTATCAAAACAATGCAACTTTGAAACTGGCTGACAATGTTCTAAGCTTTGAAGGAAAGTTCGCGAAACAGAAAAAATAGTGAACTTCGACGGATTTTTGTTTTACACCCTCCAAAGTTTTCAAAGTGATAGGAATCTTGATAGCTGAGCTCCTGAAAATGGTACAAAAATTTACTGAAAAATACTTTTTTTGTATTTTATTGACCGGTACTGTATATGCCCTCAAGAATGTCTATCAAACTGCTCATTGTAATTTGTGTGTCTAATGAAACTGGAAAAAATAACATTGATATCAACGATACTCCGTAAGAGTTGAAGCTCTTGAGCTACCCCGTTGTCTTGGCTAACTCAAGAGGTTCATTGTTCAGAACATTAATCTTACAAATTTCTCAAAGTTTTACACTATCGCAATCTAATCGCTAAAATCCCAGGAGTGTGTATGGATCGCAGAACAAACAATATCCACGTTCACACAAAAGAATGTGGAACATTTTGAAGCTTGAGCTACGCGGTCGCGAATTAAAGGTCATTACCTCAGAGACAACATTCTGAAACGGGTAAATTTTCTGGTTTAGGTTTATTTATGTATGTCGTTTGATCTAGATTGAAGGTCGCTGCTAGTATGATCTAGGTGCTCATAGTCCATTAATGAACTAGTTGAAACCGCCTAGATATCAGATATGTTGACTGATAGATGAACTATAAGACCTCTTTTTCAGAACTTACCGGATTCAAAATCATCTGAAGACACGAGAAAACGACCAGATTTGCCACATTAGCCATCATCAAGACAGTGTAGTTTCCGAAGTTTCTGGATGCGTCGGAGAAGATGAGCTTGACGAGTTCGGCATTGGTGAACAGCATTGCAAAGAATGCGACTACGTTCACCCAGGCGGTGATCTCCACCAAGGCAACCAACATGGTGGACCTGGAAAGTTCGGGAAGAATTGAGAATGTTCTTGTAGGTTTGAGAGGTATAGAAGTTTAGGGCG</canonical>
            <polymorphic>TATGGAAATGTATCAAAACAATGCAACTTTGAAACTGGCTGACAATGTTCTAAGCTTTGAAGGAAAGTTCGCGAAACAGAAAAAATAGTGAACTTCGACGGATTTTTGTTTTACACCCTCCAAAGTTTTCAAAGTGATAGGAATCTTGATAGCTGAGCTCCTGAAAATGGTACAAAAATTTACTGAAAAATACTTTTTTTGTATTTTATTGACCGGTACTGTATATGCCCTCAAGAATGTCTATCAAACTGCTCATTGTAATTTGTGTGTCTAATGAAACTGGAAAAAATAACATTGATATCAACGATACTCCGTAAGAGTTGAAGCTCTTGAGCTACCCCGTTGTCTTGGCTAACTCAAGAGGTTCATTGTTCAGAACATTAATCTTACAAATTTCTCAAAGTTTTACACTATCGCAATCTAATCGCTAAAATCCCAGGAGTGTGTATGGATCGCAGAACAAACAATATCCACGTTCACACAAAAGAATGTGGAACATKTTGAAGCTTGAGCTACGCGGTCGCGAATTAAAGGTCATTACCTCAGAGACAACATTCTGAAACGGGTAAATTTTCTGGTTTAGGTTTATTTATGTATGTCGTTTGATCTAGATTGAAGGTCGCTGCTAGTATGATCTAGGTGCTCATAGTCCATTAATGAACTAGTTGAAACCGCCTAGATATCAGATATGTTGACTGATAGATGAACTATAAGACCTCTTTTTCAGAACTTACCGGATTCAAAATCATCTGAAGACACGAGAAAACGACCAGATTTGCCACATTAGCCATCATCAAGACAGTGTAGTTTCCGAAGTTTCTGGATGCGTCGGAGAAGATGAGCTTGACGAGTTCGGCATTGGTGAACAGCATTGCAAAGAATGCGACTACGTTCACCCAGGCGGTGATCTCCACCAAGGCAACCAACATGGTGGACCTGGAAAGTTCGGGAAGAATTGAGAATGTTCTTGTAGGTTTGAGAGGTATAGAAGTTTAGGGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATACTCCGTAAGAGTTGAAG</pcr_primer_p1>
		<pcr_primer_p2>GAATGTTGTCTCTGAGGTAATGA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CGATACTCCGTAAGAGTTGAAGCTCTTGAGCTACCCCGTTGTCTTGGCTAACTCAAGAGGTTCATTGTTCAGAACATTAATCTTACAAATTTCTCAAAGTTTTACACTATCGCAATCTAATCGCTAAAATCCCAGGAGTGTGTATGGATCGCAGAACAAACAATATCCACGTTCACACAAAAGAATGTGGAACATTTTGAAGCTTGAGCTACGCGGTCGCGAATTAAAGGTCATTACCTCAGAGACAACATTC</canonical_amplicon>
		<polymorphic_amplicon>CGATACTCCGTAAGAGTTGAAGCTCTTGAGCTACCCCGTTGTCTTGGCTAACTCAAGAGGTTCATTGTTCAGAACATTAATCTTACAAATTTCTCAAAGTTTTACACTATCGCAATCTAATCGCTAAAATCCCAGGAGTGTGTATGGATCGCAGAACAAACAATATCCACGTTCACACAAAAGAATGTGGAACATKTTGAAGCTTGAGCTACGCGGTCGCGAATTAAAGGTCATTACCTCAGAGACAACATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15632</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>640947</contig_pos>
        <strand>+</strand>
        <context>TTAGGTTTAT[C/T]TATGTATGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCTCAGAGACAACATTCTGAAACGGGTAAATTTTCTGGTTTAGGTTTAT</left_flank>
        <right_flank>TATGTATGTCGTTTGATCTAGATTGAAGGTCGCTGCTAGTATGATCTAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTTCGACGGATTTTTGTTTTACACCCTCCAAAGTTTTCAAAGTGATAGGAATCTTGATAGCTGAGCTCCTGAAAATGGTACAAAAATTTACTGAAAAATACTTTTTTTGTATTTTATTGACCGGTACTGTATATGCCCTCAAGAATGTCTATCAAACTGCTCATTGTAATTTGTGTGTCTAATGAAACTGGAAAAAATAACATTGATATCAACGATACTCCGTAAGAGTTGAAGCTCTTGAGCTACCCCGTTGTCTTGGCTAACTCAAGAGGTTCATTGTTCAGAACATTAATCTTACAAATTTCTCAAAGTTTTACACTATCGCAATCTAATCGCTAAAATCCCAGGAGTGTGTATGGATCGCAGAACAAACAATATCCACGTTCACACAAAAGAATGTGGAACATTTTGAAGCTTGAGCTACGCGGTCGCGAATTAAAGGTCATTACCTCAGAGACAACATTCTGAAACGGGTAAATTTTCTGGTTTAGGTTTATTTATGTATGTCGTTTGATCTAGATTGAAGGTCGCTGCTAGTATGATCTAGGTGCTCATAGTCCATTAATGAACTAGTTGAAACCGCCTAGATATCAGATATGTTGACTGATAGATGAACTATAAGACCTCTTTTTCAGAACTTACCGGATTCAAAATCATCTGAAGACACGAGAAAACGACCAGATTTGCCACATTAGCCATCATCAAGACAGTGTAGTTTCCGAAGTTTCTGGATGCGTCGGAGAAGATGAGCTTGACGAGTTCGGCATTGGTGAACAGCATTGCAAAGAATGCGACTACGTTCACCCAGGCGGTGATCTCCACCAAGGCAACCAACATGGTGGACCTGGAAAGTTCGGGAAGAATTGAGAATGTTCTTGTAGGTTTGAGAGGTATAGAAGTTTAGGGCGCGTTCTGGAAGGTTCTTGAAAAGTCTAGAATATTCTGGAAGGATCTAGAAGGTTTTAGAGCTCCGGCTAACTTCAAACAGCGGTCTTTAA</canonical>
            <polymorphic>AACTTCGACGGATTTTTGTTTTACACCCTCCAAAGTTTTCAAAGTGATAGGAATCTTGATAGCTGAGCTCCTGAAAATGGTACAAAAATTTACTGAAAAATACTTTTTTTGTATTTTATTGACCGGTACTGTATATGCCCTCAAGAATGTCTATCAAACTGCTCATTGTAATTTGTGTGTCTAATGAAACTGGAAAAAATAACATTGATATCAACGATACTCCGTAAGAGTTGAAGCTCTTGAGCTACCCCGTTGTCTTGGCTAACTCAAGAGGTTCATTGTTCAGAACATTAATCTTACAAATTTCTCAAAGTTTTACACTATCGCAATCTAATCGCTAAAATCCCAGGAGTGTGTATGGATCGCAGAACAAACAATATCCACGTTCACACAAAAGAATGTGGAACATTTTGAAGCTTGAGCTACGCGGTCGCGAATTAAAGGTCATTACCTCAGAGACAACATTCTGAAACGGGTAAATTTTCTGGTTTAGGTTTATYTATGTATGTCGTTTGATCTAGATTGAAGGTCGCTGCTAGTATGATCTAGGTGCTCATAGTCCATTAATGAACTAGTTGAAACCGCCTAGATATCAGATATGTTGACTGATAGATGAACTATAAGACCTCTTTTTCAGAACTTACCGGATTCAAAATCATCTGAAGACACGAGAAAACGACCAGATTTGCCACATTAGCCATCATCAAGACAGTGTAGTTTCCGAAGTTTCTGGATGCGTCGGAGAAGATGAGCTTGACGAGTTCGGCATTGGTGAACAGCATTGCAAAGAATGCGACTACGTTCACCCAGGCGGTGATCTCCACCAAGGCAACCAACATGGTGGACCTGGAAAGTTCGGGAAGAATTGAGAATGTTCTTGTAGGTTTGAGAGGTATAGAAGTTTAGGGCGCGTTCTGGAAGGTTCTTGAAAAGTCTAGAATATTCTGGAAGGATCTAGAAGGTTTTAGAGCTCCGGCTAACTTCAAACAGCGGTCTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCACACAAAAGAATGTGGAAC</pcr_primer_p1>
		<pcr_primer_p2>TGAAAAAGAGGTCTTATAGTTCATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCACACAAAAGAATGTGGAACATTTTGAAGCTTGAGCTACGCGGTCGCGAATTAAAGGTCATTACCTCAGAGACAACATTCTGAAACGGGTAAATTTTCTGGTTTAGGTTTATTTATGTATGTCGTTTGATCTAGATTGAAGGTCGCTGCTAGTATGATCTAGGTGCTCATAGTCCATTAATGAACTAGTTGAAACCGCCTAGATATCAGATATGTTGACTGATAGATGAACTATAAGACCTCTTTTTCA</canonical_amplicon>
		<polymorphic_amplicon>TCACACAAAAGAATGTGGAACATTTTGAAGCTTGAGCTACGCGGTCGCGAATTAAAGGTCATTACCTCAGAGACAACATTCTGAAACGGGTAAATTTTCTGGTTTAGGTTTATYTATGTATGTCGTTTGATCTAGATTGAAGGTCGCTGCTAGTATGATCTAGGTGCTCATAGTCCATTAATGAACTAGTTGAAACCGCCTAGATATCAGATATGTTGACTGATAGATGAACTATAAGACCTCTTTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15633</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>641985</contig_pos>
        <strand>+</strand>
        <context>WAAAAATTTT[A/G]ATCTCGAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGGATTCTTTTTTTAAGAATATCATATTTTTGAAACGCCTAAAAATTTT</left_flank>
        <right_flank>ATCTCGAAATTTTTCATTTTGGTTTGTATTATGATGTTACTCATGAATAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTCTAGATAGCTTAATATAACTCAAATCAGCTTAAGATAGCCTTTCAGAACCAGAACAAATGAGTGAATTGACCTAGATTGAGCGAGCACTACCCCTGAAAAGTGGGCGGAGCTTGACGAGAAGAGGAAGACGTCACCGTTTGGGAAGAAGTGAAAAACAGCAATTAGAGGGTGTAAAGGGGGAATTTTATCACTATTTTTTGTTTATCGAGAATGCTCAAAGCCAGGAGAATATATGAAATGCGTCATTAGGAGGTCATTTGGGAGTTTATATGTTTTTAAGGATCAGAGATCTTTGACGATATTTTTTTGATGTACAAACTAGTTACAGTAGGAAAATGGGTACTGTAGTTTGGATGCTTTGCATTCTGACGAGCTGGTGTTTGCGGAAATCTACGGTAGTGGGGATTTTTTTTTAAATAATGAAAACAGAGGTCCAATTAAGCTATGGATTCTTTTTTTAAGAATATCATATTTTTGAAACGCCTAAAAATTTTAATCTCGAAATTTTTCATTTTGGTTTGTATTATGATGTTACTCATGAATAATTAGAGTGTCTGGAGGTCTAGTCAAAATTCCTCAATTATTTAAAAAAGAAAATAGAAATTAGAAAATCGCAAAAAAAAACAAAGTTTGAAAATCAGGCACTACATTCGTTGAATGGCAAAATTTATAAATCGGAAACATGAAAATGATTGCCACTTCGGAAAATTCGAGAAAGTGTGAAATTTTAGAGAGCACTAACTTCAGTTGCGAAGAAACAAATGTCTAAAAATTAAAAAAATTGAAGAAAAAATTGGAAAACAGTAACAAAATTGAAACTGATTTTTTCTAATTTTTTGAATCTTAAAACAATTTTTTCCTGTTTTTTTAAGCCAGAAAAAAATTGTTTTTTTTTCTTCGTTTTTTTTTTCGAAAATATAAATTAACTTAAAAAAGATTAGTTAGTGTGTCAAAGCGAAACAAAATCAGAAGATTAGTAATAGAAAAATGAAACT</canonical>
            <polymorphic>ACCTCTAGATAGCTTAATATAACTCAAATCAGCTTAAGATAGCCTTTCAGAACCAGAACAAATGAGTGAATTGACCTAGATTGAGCGAGCACTACCCCTGAAAAGTGGGCGGAGCTTGACGAGAAGAGGAAGACGTCACCGTTTGGGAAGAAGTGAAAAACAGCAATTAGAGGGTGTAAAGGGGGAATTTTATCACTATTTTTTGTTTATCGAGAATGCTCAAAGCCAGGAGAATATATGAAATGCGTCATTAGGAGGTCATTTGGGAGTTTATATGTTTTTAAGGATCAGAGATCTTTGACGATATTTTTTTGATGTACAAACTAGTTACAGTAGGAAAATGGGTACTGTAGTTTGGATGCTTTGCATTCTGACGAGCTGGTGTTTGCGGAAATCTACGGTAGTGGGGATTTTTTTTTAAATAATGAAAACAGAGGTCCAATTAAGCTATGGATTCTTTTTTTAAGAATATCATATTTTTGAAACGCCTAAAAATTTTRATCTCGAAATTTTTCATTTTGGTTTGTATTATGATGTTACTCATGAATAATTAGAGTGTCTGGAGGTCTAGTCAAAATTCCTCAATTATTTAAAAAAGAAAATAGAAATTAGAAAATCGCAAAAAAAAACAAAGTTTGAAAATCAGGCACTACATTCGTTGAATGGCAAAATTTATAAATCGGAAACATGAAAATGATTGCCACTTCGGAAAATTCGAGAAAGTGTGAAATTTTAGAGAGCACTAACTTCAGTTGCGAAGAAACAAATGTCTAAAAATTAAAAAAATTGAAGAAAAAATTGGAAAACAGTAACAAAATTGAAACTGATTTTTTCTAATTTTTTGAATCTTAAAACAATTTTTTCCTGTTTTTTTAAGCCAGAAAAAAATTGTTTTTTTTTCTTCGTTTTTTTTTTCGAAAATATAAATTAACTTAAAAAAGATTAGTTAGTGTGTCAAAGCGAAACAAAATCAGAAGATTAGTAATAGAAAAATGAAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>247 188 137 92 71 67 55 35 25 24 20 20 14 5</canonical_bands>
                <polymorphic_bands>247 188 137 127 71 67 55 25 24 20 20 14 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAATAATGAAAACAGAGGTCCA</pcr_primer_p1>
		<pcr_primer_p2>ATGTAGTGCCTGATTTTCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>TAAATAATGAAAACAGAGGTCCAATTAAGCTATGGATTCTTTTTTTAAGAATATCATATTTTTGAAACGCCTAAAAATTTTAATCTCGAAATTTTTCATTTTGGTTTGTATTATGATGTTACTCATGAATAATTAGAGTGTCTGGAGGTCTAGTCAAAATTCCTCAATTATTTAAAAAAGAAAATAGAAATTAGAAAATCGCAAAAAAAAACAAAGTTTGAAAATCAGGCACTACAT</canonical_amplicon>
		<polymorphic_amplicon>TAAATAATGAAAACAGAGGTCCAATTAAGCTATGGATTCTTTTTTTAAGAATATCATATTTTTGAAACGCCTAAAAATTTTRATCTCGAAATTTTTCATTTTGGTTTGTATTATGATGTTACTCATGAATAATTAGAGTGTCTGGAGGTCTAGTCAAAATTCCTCAATTATTTAAAAAAGAAAATAGAAATTAGAAAATCGCAAAAAAAAACAAAGTTTGAAAATCAGGCACTACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15634</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>641975</contig_pos>
        <strand>+</strand>
        <context>TTGAAACGCC[A/T]AAAAATTTTR</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAATTAAGCTATGGATTCTTTTTTTAAGAATATCATATTTTTGAAACGCC</left_flank>
        <right_flank>AAAAATTTTAATCTCGAAATTTTTCATTTTGGTTTGTATTATGATGTTAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGTTCTAGACCTCTAGATAGCTTAATATAACTCAAATCAGCTTAAGATAGCCTTTCAGAACCAGAACAAATGAGTGAATTGACCTAGATTGAGCGAGCACTACCCCTGAAAAGTGGGCGGAGCTTGACGAGAAGAGGAAGACGTCACCGTTTGGGAAGAAGTGAAAAACAGCAATTAGAGGGTGTAAAGGGGGAATTTTATCACTATTTTTTGTTTATCGAGAATGCTCAAAGCCAGGAGAATATATGAAATGCGTCATTAGGAGGTCATTTGGGAGTTTATATGTTTTTAAGGATCAGAGATCTTTGACGATATTTTTTTGATGTACAAACTAGTTACAGTAGGAAAATGGGTACTGTAGTTTGGATGCTTTGCATTCTGACGAGCTGGTGTTTGCGGAAATCTACGGTAGTGGGGATTTTTTTTTAAATAATGAAAACAGAGGTCCAATTAAGCTATGGATTCTTTTTTTAAGAATATCATATTTTTGAAACGCCTAAAAATTTTAATCTCGAAATTTTTCATTTTGGTTTGTATTATGATGTTACTCATGAATAATTAGAGTGTCTGGAGGTCTAGTCAAAATTCCTCAATTATTTAAAAAAGAAAATAGAAATTAGAAAATCGCAAAAAAAAACAAAGTTTGAAAATCAGGCACTACATTCGTTGAATGGCAAAATTTATAAATCGGAAACATGAAAATGATTGCCACTTCGGAAAATTCGAGAAAGTGTGAAATTTTAGAGAGCACTAACTTCAGTTGCGAAGAAACAAATGTCTAAAAATTAAAAAAATTGAAGAAAAAATTGGAAAACAGTAACAAAATTGAAACTGATTTTTTCTAATTTTTTGAATCTTAAAACAATTTTTTCCTGTTTTTTTAAGCCAGAAAAAAATTGTTTTTTTTTCTTCGTTTTTTTTTTCGAAAATATAAATTAACTTAAAAAAGATTAGTTAGTGTGTCAAAGCGAAACAAAATCAGAAGATTAGTAATAGAA</canonical>
            <polymorphic>AAGGTTCTAGACCTCTAGATAGCTTAATATAACTCAAATCAGCTTAAGATAGCCTTTCAGAACCAGAACAAATGAGTGAATTGACCTAGATTGAGCGAGCACTACCCCTGAAAAGTGGGCGGAGCTTGACGAGAAGAGGAAGACGTCACCGTTTGGGAAGAAGTGAAAAACAGCAATTAGAGGGTGTAAAGGGGGAATTTTATCACTATTTTTTGTTTATCGAGAATGCTCAAAGCCAGGAGAATATATGAAATGCGTCATTAGGAGGTCATTTGGGAGTTTATATGTTTTTAAGGATCAGAGATCTTTGACGATATTTTTTTGATGTACAAACTAGTTACAGTAGGAAAATGGGTACTGTAGTTTGGATGCTTTGCATTCTGACGAGCTGGTGTTTGCGGAAATCTACGGTAGTGGGGATTTTTTTTTAAATAATGAAAACAGAGGTCCAATTAAGCTATGGATTCTTTTTTTAAGAATATCATATTTTTGAAACGCCWAAAAATTTTAATCTCGAAATTTTTCATTTTGGTTTGTATTATGATGTTACTCATGAATAATTAGAGTGTCTGGAGGTCTAGTCAAAATTCCTCAATTATTTAAAAAAGAAAATAGAAATTAGAAAATCGCAAAAAAAAACAAAGTTTGAAAATCAGGCACTACATTCGTTGAATGGCAAAATTTATAAATCGGAAACATGAAAATGATTGCCACTTCGGAAAATTCGAGAAAGTGTGAAATTTTAGAGAGCACTAACTTCAGTTGCGAAGAAACAAATGTCTAAAAATTAAAAAAATTGAAGAAAAAATTGGAAAACAGTAACAAAATTGAAACTGATTTTTTCTAATTTTTTGAATCTTAAAACAATTTTTTCCTGTTTTTTTAAGCCAGAAAAAAATTGTTTTTTTTTCTTCGTTTTTTTTTTCGAAAATATAAATTAACTTAAAAAAGATTAGTTAGTGTGTCAAAGCGAAACAAAATCAGAAGATTAGTAATAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATAATGAAAACAGAGGTCCA</pcr_primer_p1>
		<pcr_primer_p2>ATGTAGTGCCTGATTTTCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>TAAATAATGAAAACAGAGGTCCAATTAAGCTATGGATTCTTTTTTTAAGAATATCATATTTTTGAAACGCCTAAAAATTTTAATCTCGAAATTTTTCATTTTGGTTTGTATTATGATGTTACTCATGAATAATTAGAGTGTCTGGAGGTCTAGTCAAAATTCCTCAATTATTTAAAAAAGAAAATAGAAATTAGAAAATCGCAAAAAAAAACAAAGTTTGAAAATCAGGCACTACAT</canonical_amplicon>
		<polymorphic_amplicon>TAAATAATGAAAACAGAGGTCCAATTAAGCTATGGATTCTTTTTTTAAGAATATCATATTTTTGAAACGCCWAAAAATTTTAATCTCGAAATTTTTCATTTTGGTTTGTATTATGATGTTACTCATGAATAATTAGAGTGTCTGGAGGTCTAGTCAAAATTCCTCAATTATTTAAAAAAGAAAATAGAAATTAGAAAATCGCAAAAAAAAACAAAGTTTGAAAATCAGGCACTACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15635</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>641880</contig_pos>
        <strand>+</strand>
        <context>TTTGCGGAAA[A/T]CTACGGTAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTACTGTAGTTTGGATGCTTTGCATTCTGACGAGCTGGTGTTTGCGGAAA</left_flank>
        <right_flank>CTACGGTAGTGGGGATTTTTTTTTAAATAATGAAAACAGAGGTCCAATTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAGAATATTCTGGAAGGATCTAGAAGGTTTTAGAGCTCCGGCTAACTTCAAACAGCGGTCTTTAAGCTTGGAAAGAAATCTAGAAGGTTTTAAAAGGTTCTAGACCTCTAGATAGCTTAATATAACTCAAATCAGCTTAAGATAGCCTTTCAGAACCAGAACAAATGAGTGAATTGACCTAGATTGAGCGAGCACTACCCCTGAAAAGTGGGCGGAGCTTGACGAGAAGAGGAAGACGTCACCGTTTGGGAAGAAGTGAAAAACAGCAATTAGAGGGTGTAAAGGGGGAATTTTATCACTATTTTTTGTTTATCGAGAATGCTCAAAGCCAGGAGAATATATGAAATGCGTCATTAGGAGGTCATTTGGGAGTTTATATGTTTTTAAGGATCAGAGATCTTTGACGATATTTTTTTGATGTACAAACTAGTTACAGTAGGAAAATGGGTACTGTAGTTTGGATGCTTTGCATTCTGACGAGCTGGTGTTTGCGGAAATCTACGGTAGTGGGGATTTTTTTTTAAATAATGAAAACAGAGGTCCAATTAAGCTATGGATTCTTTTTTTAAGAATATCATATTTTTGAAACGCCTAAAAATTTTAATCTCGAAATTTTTCATTTTGGTTTGTATTATGATGTTACTCATGAATAATTAGAGTGTCTGGAGGTCTAGTCAAAATTCCTCAATTATTTAAAAAAGAAAATAGAAATTAGAAAATCGCAAAAAAAAACAAAGTTTGAAAATCAGGCACTACATTCGTTGAATGGCAAAATTTATAAATCGGAAACATGAAAATGATTGCCACTTCGGAAAATTCGAGAAAGTGTGAAATTTTAGAGAGCACTAACTTCAGTTGCGAAGAAACAAATGTCTAAAAATTAAAAAAATTGAAGAAAAAATTGGAAAACAGTAACAAAATTGAAACTGATTTTTTCTAATTTTTTGAATCTTAAAACAATTTTTTCCTGTTTTTTTAAGCCAGAAAAAAATTGTTTT</canonical>
            <polymorphic>TCTAGAATATTCTGGAAGGATCTAGAAGGTTTTAGAGCTCCGGCTAACTTCAAACAGCGGTCTTTAAGCTTGGAAAGAAATCTAGAAGGTTTTAAAAGGTTCTAGACCTCTAGATAGCTTAATATAACTCAAATCAGCTTAAGATAGCCTTTCAGAACCAGAACAAATGAGTGAATTGACCTAGATTGAGCGAGCACTACCCCTGAAAAGTGGGCGGAGCTTGACGAGAAGAGGAAGACGTCACCGTTTGGGAAGAAGTGAAAAACAGCAATTAGAGGGTGTAAAGGGGGAATTTTATCACTATTTTTTGTTTATCGAGAATGCTCAAAGCCAGGAGAATATATGAAATGCGTCATTAGGAGGTCATTTGGGAGTTTATATGTTTTTAAGGATCAGAGATCTTTGACGATATTTTTTTGATGTACAAACTAGTTACAGTAGGAAAATGGGTACTGTAGTTTGGATGCTTTGCATTCTGACGAGCTGGTGTTTGCGGAAAWCTACGGTAGTGGGGATTTTTTTTTAAATAATGAAAACAGAGGTCCAATTAAGCTATGGATTCTTTTTTTAAGAATATCATATTTTTGAAACGCCTAAAAATTTTAATCTCGAAATTTTTCATTTTGGTTTGTATTATGATGTTACTCATGAATAATTAGAGTGTCTGGAGGTCTAGTCAAAATTCCTCAATTATTTAAAAAAGAAAATAGAAATTAGAAAATCGCAAAAAAAAACAAAGTTTGAAAATCAGGCACTACATTCGTTGAATGGCAAAATTTATAAATCGGAAACATGAAAATGATTGCCACTTCGGAAAATTCGAGAAAGTGTGAAATTTTAGAGAGCACTAACTTCAGTTGCGAAGAAACAAATGTCTAAAAATTAAAAAAATTGAAGAAAAAATTGGAAAACAGTAACAAAATTGAAACTGATTTTTTCTAATTTTTTGAATCTTAAAACAATTTTTTCCTGTTTTTTTAAGCCAGAAAAAAATTGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAGATCTTTGACGATATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AACATCATAATACAAACCAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGAGATCTTTGACGATATTTTTTTGATGTACAAACTAGTTACAGTAGGAAAATGGGTACTGTAGTTTGGATGCTTTGCATTCTGACGAGCTGGTGTTTGCGGAAATCTACGGTAGTGGGGATTTTTTTTTAAATAATGAAAACAGAGGTCCAATTAAGCTATGGATTCTTTTTTTAAGAATATCATATTTTTGAAACGCCTAAAAATTTTAATCTCGAAATTTTTCATTTTGGTTTGTATTATGATGTT</canonical_amplicon>
		<polymorphic_amplicon>CAGAGATCTTTGACGATATTTTTTTGATGTACAAACTAGTTACAGTAGGAAAATGGGTACTGTAGTTTGGATGCTTTGCATTCTGACGAGCTGGTGTTTGCGGAAAWCTACGGTAGTGGGGATTTTTTTTTAAATAATGAAAACAGAGGTCCAATTAAGCTATGGATTCTTTTTTTAAGAATATCATATTTTTGAAACGCCTAAAAATTTTAATCTCGAAATTTTTCATTTTGGTTTGTATTATGATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15636</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>641864</contig_pos>
        <strand>+</strand>
        <context>TTCTGACGAG[A/C]TGGTGTTTGC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TACAGTAGGAAAATGGGTACTGTAGTTTGGATGCTTTGCATTCTGACGAG</left_flank>
        <right_flank>TGGTGTTTGCGGAAATCTACGGTAGTGGGGATTTTTTTTTAAATAATGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGGTTCTTGAAAAGTCTAGAATATTCTGGAAGGATCTAGAAGGTTTTAGAGCTCCGGCTAACTTCAAACAGCGGTCTTTAAGCTTGGAAAGAAATCTAGAAGGTTTTAAAAGGTTCTAGACCTCTAGATAGCTTAATATAACTCAAATCAGCTTAAGATAGCCTTTCAGAACCAGAACAAATGAGTGAATTGACCTAGATTGAGCGAGCACTACCCCTGAAAAGTGGGCGGAGCTTGACGAGAAGAGGAAGACGTCACCGTTTGGGAAGAAGTGAAAAACAGCAATTAGAGGGTGTAAAGGGGGAATTTTATCACTATTTTTTGTTTATCGAGAATGCTCAAAGCCAGGAGAATATATGAAATGCGTCATTAGGAGGTCATTTGGGAGTTTATATGTTTTTAAGGATCAGAGATCTTTGACGATATTTTTTTGATGTACAAACTAGTTACAGTAGGAAAATGGGTACTGTAGTTTGGATGCTTTGCATTCTGACGAGCTGGTGTTTGCGGAAATCTACGGTAGTGGGGATTTTTTTTTAAATAATGAAAACAGAGGTCCAATTAAGCTATGGATTCTTTTTTTAAGAATATCATATTTTTGAAACGCCTAAAAATTTTAATCTCGAAATTTTTCATTTTGGTTTGTATTATGATGTTACTCATGAATAATTAGAGTGTCTGGAGGTCTAGTCAAAATTCCTCAATTATTTAAAAAAGAAAATAGAAATTAGAAAATCGCAAAAAAAAACAAAGTTTGAAAATCAGGCACTACATTCGTTGAATGGCAAAATTTATAAATCGGAAACATGAAAATGATTGCCACTTCGGAAAATTCGAGAAAGTGTGAAATTTTAGAGAGCACTAACTTCAGTTGCGAAGAAACAAATGTCTAAAAATTAAAAAAATTGAAGAAAAAATTGGAAAACAGTAACAAAATTGAAACTGATTTTTTCTAATTTTTTGAATCTTAAAACAATTTTTTCCTGTTTTTTTAAGCC</canonical>
            <polymorphic>GAAGGTTCTTGAAAAGTCTAGAATATTCTGGAAGGATCTAGAAGGTTTTAGAGCTCCGGCTAACTTCAAACAGCGGTCTTTAAGCTTGGAAAGAAATCTAGAAGGTTTTAAAAGGTTCTAGACCTCTAGATAGCTTAATATAACTCAAATCAGCTTAAGATAGCCTTTCAGAACCAGAACAAATGAGTGAATTGACCTAGATTGAGCGAGCACTACCCCTGAAAAGTGGGCGGAGCTTGACGAGAAGAGGAAGACGTCACCGTTTGGGAAGAAGTGAAAAACAGCAATTAGAGGGTGTAAAGGGGGAATTTTATCACTATTTTTTGTTTATCGAGAATGCTCAAAGCCAGGAGAATATATGAAATGCGTCATTAGGAGGTCATTTGGGAGTTTATATGTTTTTAAGGATCAGAGATCTTTGACGATATTTTTTTGATGTACAAACTAGTTACAGTAGGAAAATGGGTACTGTAGTTTGGATGCTTTGCATTCTGACGAGMTGGTGTTTGCGGAAATCTACGGTAGTGGGGATTTTTTTTTAAATAATGAAAACAGAGGTCCAATTAAGCTATGGATTCTTTTTTTAAGAATATCATATTTTTGAAACGCCTAAAAATTTTAATCTCGAAATTTTTCATTTTGGTTTGTATTATGATGTTACTCATGAATAATTAGAGTGTCTGGAGGTCTAGTCAAAATTCCTCAATTATTTAAAAAAGAAAATAGAAATTAGAAAATCGCAAAAAAAAACAAAGTTTGAAAATCAGGCACTACATTCGTTGAATGGCAAAATTTATAAATCGGAAACATGAAAATGATTGCCACTTCGGAAAATTCGAGAAAGTGTGAAATTTTAGAGAGCACTAACTTCAGTTGCGAAGAAACAAATGTCTAAAAATTAAAAAAATTGAAGAAAAAATTGGAAAACAGTAACAAAATTGAAACTGATTTTTTCTAATTTTTTGAATCTTAAAACAATTTTTTCCTGTTTTTTTAAGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>432 264 82 69 53 49 31 20</canonical_bands>
                <polymorphic_bands>432 333 82 53 49 31 20</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>430 153 111 72 69 53 49 25 20 10 6 2</canonical_bands>
                <polymorphic_bands>430 222 111 72 53 49 25 20 10 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAGATCTTTGACGATATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AACATCATAATACAAACCAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGAGATCTTTGACGATATTTTTTTGATGTACAAACTAGTTACAGTAGGAAAATGGGTACTGTAGTTTGGATGCTTTGCATTCTGACGAGCTGGTGTTTGCGGAAATCTACGGTAGTGGGGATTTTTTTTTAAATAATGAAAACAGAGGTCCAATTAAGCTATGGATTCTTTTTTTAAGAATATCATATTTTTGAAACGCCTAAAAATTTTAATCTCGAAATTTTTCATTTTGGTTTGTATTATGATGTT</canonical_amplicon>
		<polymorphic_amplicon>CAGAGATCTTTGACGATATTTTTTTGATGTACAAACTAGTTACAGTAGGAAAATGGGTACTGTAGTTTGGATGCTTTGCATTCTGACGAGMTGGTGTTTGCGGAAATCTACGGTAGTGGGGATTTTTTTTTAAATAATGAAAACAGAGGTCCAATTAAGCTATGGATTCTTTTTTTAAGAATATCATATTTTTGAAACGCCTAAAAATTTTAATCTCGAAATTTTTCATTTTGGTTTGTATTATGATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15637</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>641829</contig_pos>
        <strand>+</strand>
        <context>TAGGAAAATG[A/G]GTACTGTAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCTTTGACGATATTTTTTTGATGTACAAACTAGTTACAGTAGGAAAATG</left_flank>
        <right_flank>GTACTGTAGTTTGGATGCTTTGCATTCTGACGAGCTGGTGTTTGCGGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTTGAGAGGTATAGAAGTTTAGGGCGCGTTCTGGAAGGTTCTTGAAAAGTCTAGAATATTCTGGAAGGATCTAGAAGGTTTTAGAGCTCCGGCTAACTTCAAACAGCGGTCTTTAAGCTTGGAAAGAAATCTAGAAGGTTTTAAAAGGTTCTAGACCTCTAGATAGCTTAATATAACTCAAATCAGCTTAAGATAGCCTTTCAGAACCAGAACAAATGAGTGAATTGACCTAGATTGAGCGAGCACTACCCCTGAAAAGTGGGCGGAGCTTGACGAGAAGAGGAAGACGTCACCGTTTGGGAAGAAGTGAAAAACAGCAATTAGAGGGTGTAAAGGGGGAATTTTATCACTATTTTTTGTTTATCGAGAATGCTCAAAGCCAGGAGAATATATGAAATGCGTCATTAGGAGGTCATTTGGGAGTTTATATGTTTTTAAGGATCAGAGATCTTTGACGATATTTTTTTGATGTACAAACTAGTTACAGTAGGAAAATGGGTACTGTAGTTTGGATGCTTTGCATTCTGACGAGCTGGTGTTTGCGGAAATCTACGGTAGTGGGGATTTTTTTTTAAATAATGAAAACAGAGGTCCAATTAAGCTATGGATTCTTTTTTTAAGAATATCATATTTTTGAAACGCCTAAAAATTTTAATCTCGAAATTTTTCATTTTGGTTTGTATTATGATGTTACTCATGAATAATTAGAGTGTCTGGAGGTCTAGTCAAAATTCCTCAATTATTTAAAAAAGAAAATAGAAATTAGAAAATCGCAAAAAAAAACAAAGTTTGAAAATCAGGCACTACATTCGTTGAATGGCAAAATTTATAAATCGGAAACATGAAAATGATTGCCACTTCGGAAAATTCGAGAAAGTGTGAAATTTTAGAGAGCACTAACTTCAGTTGCGAAGAAACAAATGTCTAAAAATTAAAAAAATTGAAGAAAAAATTGGAAAACAGTAACAAAATTGAAACTGATTTTTTCTAATTTTTTG</canonical>
            <polymorphic>GGTTTGAGAGGTATAGAAGTTTAGGGCGCGTTCTGGAAGGTTCTTGAAAAGTCTAGAATATTCTGGAAGGATCTAGAAGGTTTTAGAGCTCCGGCTAACTTCAAACAGCGGTCTTTAAGCTTGGAAAGAAATCTAGAAGGTTTTAAAAGGTTCTAGACCTCTAGATAGCTTAATATAACTCAAATCAGCTTAAGATAGCCTTTCAGAACCAGAACAAATGAGTGAATTGACCTAGATTGAGCGAGCACTACCCCTGAAAAGTGGGCGGAGCTTGACGAGAAGAGGAAGACGTCACCGTTTGGGAAGAAGTGAAAAACAGCAATTAGAGGGTGTAAAGGGGGAATTTTATCACTATTTTTTGTTTATCGAGAATGCTCAAAGCCAGGAGAATATATGAAATGCGTCATTAGGAGGTCATTTGGGAGTTTATATGTTTTTAAGGATCAGAGATCTTTGACGATATTTTTTTGATGTACAAACTAGTTACAGTAGGAAAATGRGTACTGTAGTTTGGATGCTTTGCATTCTGACGAGCTGGTGTTTGCGGAAATCTACGGTAGTGGGGATTTTTTTTTAAATAATGAAAACAGAGGTCCAATTAAGCTATGGATTCTTTTTTTAAGAATATCATATTTTTGAAACGCCTAAAAATTTTAATCTCGAAATTTTTCATTTTGGTTTGTATTATGATGTTACTCATGAATAATTAGAGTGTCTGGAGGTCTAGTCAAAATTCCTCAATTATTTAAAAAAGAAAATAGAAATTAGAAAATCGCAAAAAAAAACAAAGTTTGAAAATCAGGCACTACATTCGTTGAATGGCAAAATTTATAAATCGGAAACATGAAAATGATTGCCACTTCGGAAAATTCGAGAAAGTGTGAAATTTTAGAGAGCACTAACTTCAGTTGCGAAGAAACAAATGTCTAAAAATTAAAAAAATTGAAGAAAAAATTGGAAAACAGTAACAAAATTGAAACTGATTTTTTCTAATTTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAGATCTTTGACGATATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AACATCATAATACAAACCAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGAGATCTTTGACGATATTTTTTTGATGTACAAACTAGTTACAGTAGGAAAATGGGTACTGTAGTTTGGATGCTTTGCATTCTGACGAGCTGGTGTTTGCGGAAATCTACGGTAGTGGGGATTTTTTTTTAAATAATGAAAACAGAGGTCCAATTAAGCTATGGATTCTTTTTTTAAGAATATCATATTTTTGAAACGCCTAAAAATTTTAATCTCGAAATTTTTCATTTTGGTTTGTATTATGATGTT</canonical_amplicon>
		<polymorphic_amplicon>CAGAGATCTTTGACGATATTTTTTTGATGTACAAACTAGTTACAGTAGGAAAATGRGTACTGTAGTTTGGATGCTTTGCATTCTGACGAGCTGGTGTTTGCGGAAATCTACGGTAGTGGGGATTTTTTTTTAAATAATGAAAACAGAGGTCCAATTAAGCTATGGATTCTTTTTTTAAGAATATCATATTTTTGAAACGCCTAAAAATTTTAATCTCGAAATTTTTCATTTTGGTTTGTATTATGATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15638</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>641703</contig_pos>
        <strand>+</strand>
        <context>TATCGAGAAT[A/G]CTCAAAGCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGAGGGTGTAAAGGGGGAATTTTATCACTATTTTTTGTTTATCGAGAAT</left_flank>
        <right_flank>CTCAAAGCCAGGAGAATATATGAAATGCGTCATTAGGAGGTCATTTGGGA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGAGTTCGGCATTGGTGAACAGCATTGCAAAGAATGCGACTACGTTCACCCAGGCGGTGATCTCCACCAAGGCAACCAACATGGTGGACCTGGAAAGTTCGGGAAGAATTGAGAATGTTCTTGTAGGTTTGAGAGGTATAGAAGTTTAGGGCGCGTTCTGGAAGGTTCTTGAAAAGTCTAGAATATTCTGGAAGGATCTAGAAGGTTTTAGAGCTCCGGCTAACTTCAAACAGCGGTCTTTAAGCTTGGAAAGAAATCTAGAAGGTTTTAAAAGGTTCTAGACCTCTAGATAGCTTAATATAACTCAAATCAGCTTAAGATAGCCTTTCAGAACCAGAACAAATGAGTGAATTGACCTAGATTGAGCGAGCACTACCCCTGAAAAGTGGGCGGAGCTTGACGAGAAGAGGAAGACGTCACCGTTTGGGAAGAAGTGAAAAACAGCAATTAGAGGGTGTAAAGGGGGAATTTTATCACTATTTTTTGTTTATCGAGAATGCTCAAAGCCAGGAGAATATATGAAATGCGTCATTAGGAGGTCATTTGGGAGTTTATATGTTTTTAAGGATCAGAGATCTTTGACGATATTTTTTTGATGTACAAACTAGTTACAGTAGGAAAATGGGTACTGTAGTTTGGATGCTTTGCATTCTGACGAGCTGGTGTTTGCGGAAATCTACGGTAGTGGGGATTTTTTTTTAAATAATGAAAACAGAGGTCCAATTAAGCTATGGATTCTTTTTTTAAGAATATCATATTTTTGAAACGCCTAAAAATTTTAATCTCGAAATTTTTCATTTTGGTTTGTATTATGATGTTACTCATGAATAATTAGAGTGTCTGGAGGTCTAGTCAAAATTCCTCAATTATTTAAAAAAGAAAATAGAAATTAGAAAATCGCAAAAAAAAACAAAGTTTGAAAATCAGGCACTACATTCGTTGAATGGCAAAATTTATAAATCGGAAACATGAAAATGATTGCCACTTCGGAAAATTCGA</canonical>
            <polymorphic>ACGAGTTCGGCATTGGTGAACAGCATTGCAAAGAATGCGACTACGTTCACCCAGGCGGTGATCTCCACCAAGGCAACCAACATGGTGGACCTGGAAAGTTCGGGAAGAATTGAGAATGTTCTTGTAGGTTTGAGAGGTATAGAAGTTTAGGGCGCGTTCTGGAAGGTTCTTGAAAAGTCTAGAATATTCTGGAAGGATCTAGAAGGTTTTAGAGCTCCGGCTAACTTCAAACAGCGGTCTTTAAGCTTGGAAAGAAATCTAGAAGGTTTTAAAAGGTTCTAGACCTCTAGATAGCTTAATATAACTCAAATCAGCTTAAGATAGCCTTTCAGAACCAGAACAAATGAGTGAATTGACCTAGATTGAGCGAGCACTACCCCTGAAAAGTGGGCGGAGCTTGACGAGAAGAGGAAGACGTCACCGTTTGGGAAGAAGTGAAAAACAGCAATTAGAGGGTGTAAAGGGGGAATTTTATCACTATTTTTTGTTTATCGAGAATRCTCAAAGCCAGGAGAATATATGAAATGCGTCATTAGGAGGTCATTTGGGAGTTTATATGTTTTTAAGGATCAGAGATCTTTGACGATATTTTTTTGATGTACAAACTAGTTACAGTAGGAAAATGGGTACTGTAGTTTGGATGCTTTGCATTCTGACGAGCTGGTGTTTGCGGAAATCTACGGTAGTGGGGATTTTTTTTTAAATAATGAAAACAGAGGTCCAATTAAGCTATGGATTCTTTTTTTAAGAATATCATATTTTTGAAACGCCTAAAAATTTTAATCTCGAAATTTTTCATTTTGGTTTGTATTATGATGTTACTCATGAATAATTAGAGTGTCTGGAGGTCTAGTCAAAATTCCTCAATTATTTAAAAAAGAAAATAGAAATTAGAAAATCGCAAAAAAAAACAAAGTTTGAAAATCAGGCACTACATTCGTTGAATGGCAAAATTTATAAATCGGAAACATGAAAATGATTGCCACTTCGGAAAATTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTTAAGATAGCCTTTCAGAAC</pcr_primer_p1>
		<pcr_primer_p2>ACATATAAACTCCCAAATGACCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGCTTAAGATAGCCTTTCAGAACCAGAACAAATGAGTGAATTGACCTAGATTGAGCGAGCACTACCCCTGAAAAGTGGGCGGAGCTTGACGAGAAGAGGAAGACGTCACCGTTTGGGAAGAAGTGAAAAACAGCAATTAGAGGGTGTAAAGGGGGAATTTTATCACTATTTTTTGTTTATCGAGAATGCTCAAAGCCAGGAGAATATATGAAATGCGTCATTAGGAGGTCATTTGGGAGTTTATATGT</canonical_amplicon>
		<polymorphic_amplicon>AGCTTAAGATAGCCTTTCAGAACCAGAACAAATGAGTGAATTGACCTAGATTGAGCGAGCACTACCCCTGAAAAGTGGGCGGAGCTTGACGAGAAGAGGAAGACGTCACCGTTTGGGAAGAAGTGAAAAACAGCAATTAGAGGGTGTAAAGGGGGAATTTTATCACTATTTTTTGTTTATCGAGAATRCTCAAAGCCAGGAGAATATATGAAATGCGTCATTAGGAGGTCATTTGGGAGTTTATATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15639</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>647807</contig_pos>
        <strand>+</strand>
        <context>AAGACGTGCA[C/T]TATTTCATAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGAATCTCAGAAGACGTCAAAATCACAAGAATCTTTGAAGACGTGCA</left_flank>
        <right_flank>TATTTCATATTCAGGGTTTCAAAAAACGTCAACTTTTCGAATTCAATTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACAGTTGGGGTGGCTGGAAAAGGCTTAAAATTATGTACAATCAAAGTGCGAATAGAAATTGGGGTGTAGGGGGTAATTAGTGTCTAATTAATGAGCAATTATCCAAAGTGCAATTAGAGAGAAGCAAAAAGTTCCCGTTGCGCGGTGAAGGCTGATGGAACCATTGTCCTCACCGTCATCTCTGAAAATTTTTTTTCAATTAGTGGGTAATTAGGGGTAATTAGGAGGTAATCAGTGATCAAAAATTCCAAAAAAAAAAGTTTAGATAATTAGTTAGGGTAATGAAAACCAATAATTACCCATTATCGTCGTCGTCTTCATCTGAATCCTTCTTTTTCCGGTTTTCCTTTTTCATCGTCTTCTTTTTTGGCTTTTCTTCTTCCTCTTCCTCATCGTTGTCATCAGACTTGCCACGTCGAGATGTCGGACGTCTTCTTTTCTGAAAAAGTTTTGAATCTCAGAAGACGTCAAAATCACAAGAATCTTTGAAGACGTGCACTATTTCATATTCAGGGTTTCAAAAAACGTCAACTTTTCGAATTCAATTTTGAGTTTCAGAAAAAGGGACGTCTTCTAAACTTCAGAAAACTTCAAATTTTCAGACTCTGGGTTACAGAAAACGGTCTTCTGACTTTTGGAAATGTCACAGTTCTCAATTTCTGAATTTCAGAAGGTCCTTTTCTAAATACAGAATCTTAGAAAACGTGAAAAATTCTGAATTCCAGAAGGCGCCACAGCTTTAAATTCAGAATTTCGACGTCTTCTAAAATTCAGAAACCAAACTCACCGGAACGTCTCCTTCTTCCATCGGATCAAACTCCTCCTCCTCCTCTTCTTCATCCTTCTCATATCTCGACGGACGACCTCTTCTAGATGTTGGCTTCTTCTTCTTACGTGGCGATTCAGAATCCTCCACGTCTTCAGAATTCTCTTCCTCTTCTTCCTCCTTCTTCGGACGTCTTCTGACCTCCTTCTTCTTCTTATTCTCCTCCTCACGTC</canonical>
            <polymorphic>TACAGTTGGGGTGGCTGGAAAAGGCTTAAAATTATGTACAATCAAAGTGCGAATAGAAATTGGGGTGTAGGGGGTAATTAGTGTCTAATTAATGAGCAATTATCCAAAGTGCAATTAGAGAGAAGCAAAAAGTTCCCGTTGCGCGGTGAAGGCTGATGGAACCATTGTCCTCACCGTCATCTCTGAAAATTTTTTTTCAATTAGTGGGTAATTAGGGGTAATTAGGAGGTAATCAGTGATCAAAAATTCCAAAAAAAAAAGTTTAGATAATTAGTTAGGGTAATGAAAACCAATAATTACCCATTATCGTCGTCGTCTTCATCTGAATCCTTCTTTTTCCGGTTTTCCTTTTTCATCGTCTTCTTTTTTGGCTTTTCTTCTTCCTCTTCCTCATCGTTGTCATCAGACTTGCCACGTCGAGATGTCGGACGTCTTCTTTTCTGAAAAAGTTTTGAATCTCAGAAGACGTCAAAATCACAAGAATCTTTGAAGACGTGCAYTATTTCATATTCAGGGTTTCAAAAAACGTCAACTTTTCGAATTCAATTTTGAGTTTCAGAAAAAGGGACGTCTTCTAAACTTCAGAAAACTTCAAATTTTCAGACTCTGGGTTACAGAAAACGGTCTTCTGACTTTTGGAAATGTCACAGTTCTCAATTTCTGAATTTCAGAAGGTCCTTTTCTAAATACAGAATCTTAGAAAACGTGAAAAATTCTGAATTCCAGAAGGCGCCACAGCTTTAAATTCAGAATTTCGACGTCTTCTAAAATTCAGAAACCAAACTCACCGGAACGTCTCCTTCTTCCATCGGATCAAACTCCTCCTCCTCCTCTTCTTCATCCTTCTCATATCTCGACGGACGACCTCTTCTAGATGTTGGCTTCTTCTTCTTACGTGGCGATTCAGAATCCTCCACGTCTTCAGAATTCTCTTCCTCTTCTTCCTCCTTCTTCGGACGTCTTCTGACCTCCTTCTTCTTCTTATTCTCCTCCTCACGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTGCAC</site>
                <isoschizomers>
                    <enzyme>Alw44I</enzyme>
                    <enzyme>ApaLI</enzyme>
                    <enzyme>VneI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>176 148 111 80 63 61 52 37 36 33 32 28 27 25 20 18 18 16 13 4 2</canonical_bands>
                <polymorphic_bands>176 150 111 80 63 61 52 37 36 33 32 28 27 25 20 18 18 16 13 4</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>497 470 33</canonical_bands>
                <polymorphic_bands>530 470</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCGTCGTCGTCTTCATCT</pcr_primer_p1>
		<pcr_primer_p2>ACTCAAAATTGAATTCGAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATCGTCGTCGTCTTCATCTGAATCCTTCTTTTTCCGGTTTTCCTTTTTCATCGTCTTCTTTTTTGGCTTTTCTTCTTCCTCTTCCTCATCGTTGTCATCAGACTTGCCACGTCGAGATGTCGGACGTCTTCTTTTCTGAAAAAGTTTTGAATCTCAGAAGACGTCAAAATCACAAGAATCTTTGAAGACGTGCACTATTTCATATTCAGGGTTTCAAAAAACGTCAACTTTTCGAATTCAATTTTGAGT</canonical_amplicon>
		<polymorphic_amplicon>TATCGTCGTCGTCTTCATCTGAATCCTTCTTTTTCCGGTTTTCCTTTTTCATCGTCTTCTTTTTTGGCTTTTCTTCTTCCTCTTCCTCATCGTTGTCATCAGACTTGCCACGTCGAGATGTCGGACGTCTTCTTTTCTGAAAAAGTTTTGAATCTCAGAAGACGTCAAAATCACAAGAATCTTTGAAGACGTGCAYTATTTCATATTCAGGGTTTCAAAAAACGTCAACTTTTCGAATTCAATTTTGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15640</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>647832</contig_pos>
        <strand>+</strand>
        <context>GGTTTCAAAA[A/G]ACGTCAACTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCACAAGAATCTTTGAAGACGTGCACTATTTCATATTCAGGGTTTCAAAA</left_flank>
        <right_flank>ACGTCAACTTTTCGAATTCAATTTTGAGTTTCAGAAAAAGGGACGTCTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAATTATGTACAATCAAAGTGCGAATAGAAATTGGGGTGTAGGGGGTAATTAGTGTCTAATTAATGAGCAATTATCCAAAGTGCAATTAGAGAGAAGCAAAAAGTTCCCGTTGCGCGGTGAAGGCTGATGGAACCATTGTCCTCACCGTCATCTCTGAAAATTTTTTTTCAATTAGTGGGTAATTAGGGGTAATTAGGAGGTAATCAGTGATCAAAAATTCCAAAAAAAAAAGTTTAGATAATTAGTTAGGGTAATGAAAACCAATAATTACCCATTATCGTCGTCGTCTTCATCTGAATCCTTCTTTTTCCGGTTTTCCTTTTTCATCGTCTTCTTTTTTGGCTTTTCTTCTTCCTCTTCCTCATCGTTGTCATCAGACTTGCCACGTCGAGATGTCGGACGTCTTCTTTTCTGAAAAAGTTTTGAATCTCAGAAGACGTCAAAATCACAAGAATCTTTGAAGACGTGCACTATTTCATATTCAGGGTTTCAAAAAACGTCAACTTTTCGAATTCAATTTTGAGTTTCAGAAAAAGGGACGTCTTCTAAACTTCAGAAAACTTCAAATTTTCAGACTCTGGGTTACAGAAAACGGTCTTCTGACTTTTGGAAATGTCACAGTTCTCAATTTCTGAATTTCAGAAGGTCCTTTTCTAAATACAGAATCTTAGAAAACGTGAAAAATTCTGAATTCCAGAAGGCGCCACAGCTTTAAATTCAGAATTTCGACGTCTTCTAAAATTCAGAAACCAAACTCACCGGAACGTCTCCTTCTTCCATCGGATCAAACTCCTCCTCCTCCTCTTCTTCATCCTTCTCATATCTCGACGGACGACCTCTTCTAGATGTTGGCTTCTTCTTCTTACGTGGCGATTCAGAATCCTCCACGTCTTCAGAATTCTCTTCCTCTTCTTCCTCCTTCTTCGGACGTCTTCTGACCTCCTTCTTCTTCTTATTCTCCTCCTCACGTCTTCTAGTACTGTACTTCTTATCCAT</canonical>
            <polymorphic>TTAAAATTATGTACAATCAAAGTGCGAATAGAAATTGGGGTGTAGGGGGTAATTAGTGTCTAATTAATGAGCAATTATCCAAAGTGCAATTAGAGAGAAGCAAAAAGTTCCCGTTGCGCGGTGAAGGCTGATGGAACCATTGTCCTCACCGTCATCTCTGAAAATTTTTTTTCAATTAGTGGGTAATTAGGGGTAATTAGGAGGTAATCAGTGATCAAAAATTCCAAAAAAAAAAGTTTAGATAATTAGTTAGGGTAATGAAAACCAATAATTACCCATTATCGTCGTCGTCTTCATCTGAATCCTTCTTTTTCCGGTTTTCCTTTTTCATCGTCTTCTTTTTTGGCTTTTCTTCTTCCTCTTCCTCATCGTTGTCATCAGACTTGCCACGTCGAGATGTCGGACGTCTTCTTTTCTGAAAAAGTTTTGAATCTCAGAAGACGTCAAAATCACAAGAATCTTTGAAGACGTGCACTATTTCATATTCAGGGTTTCAAAARACGTCAACTTTTCGAATTCAATTTTGAGTTTCAGAAAAAGGGACGTCTTCTAAACTTCAGAAAACTTCAAATTTTCAGACTCTGGGTTACAGAAAACGGTCTTCTGACTTTTGGAAATGTCACAGTTCTCAATTTCTGAATTTCAGAAGGTCCTTTTCTAAATACAGAATCTTAGAAAACGTGAAAAATTCTGAATTCCAGAAGGCGCCACAGCTTTAAATTCAGAATTTCGACGTCTTCTAAAATTCAGAAACCAAACTCACCGGAACGTCTCCTTCTTCCATCGGATCAAACTCCTCCTCCTCCTCTTCTTCATCCTTCTCATATCTCGACGGACGACCTCTTCTAGATGTTGGCTTCTTCTTCTTACGTGGCGATTCAGAATCCTCCACGTCTTCAGAATTCTCTTCCTCTTCTTCCTCCTTCTTCGGACGTCTTCTGACCTCCTTCTTCTTCTTATTCTCCTCCTCACGTCTTCTAGTACTGTACTTCTTATCCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGACGTCAAAATCACAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTTCACGTTTTCTAAGATTCTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGACGTCAAAATCACAAGAATCTTTGAAGACGTGCACTATTTCATATTCAGGGTTTCAAAAAACGTCAACTTTTCGAATTCAATTTTGAGTTTCAGAAAAAGGGACGTCTTCTAAACTTCAGAAAACTTCAAATTTTCAGACTCTGGGTTACAGAAAACGGTCTTCTGACTTTTGGAAATGTCACAGTTCTCAATTTCTGAATTTCAGAAGGTCCTTTTCTAAATACAGAATCTTAGAAAACGTGAAA</canonical_amplicon>
		<polymorphic_amplicon>GAAGACGTCAAAATCACAAGAATCTTTGAAGACGTGCACTATTTCATATTCAGGGTTTCAAAARACGTCAACTTTTCGAATTCAATTTTGAGTTTCAGAAAAAGGGACGTCTTCTAAACTTCAGAAAACTTCAAATTTTCAGACTCTGGGTTACAGAAAACGGTCTTCTGACTTTTGGAAATGTCACAGTTCTCAATTTCTGAATTTCAGAAGGTCCTTTTCTAAATACAGAATCTTAGAAAACGTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15641</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>647889</contig_pos>
        <strand>+</strand>
        <context>CTTCTAAACT[C/T]CAGAAAACTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTTTTCGAATTCAATTTTGAGTTTCAGAAAAAGGGACGTCTTCTAAACT</left_flank>
        <right_flank>CAGAAAACTTCAAATTTTCAGACTCTGGGTTACAGAAAACGGTCTTCTGA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCTAATTAATGAGCAATTATCCAAAGTGCAATTAGAGAGAAGCAAAAAGTTCCCGTTGCGCGGTGAAGGCTGATGGAACCATTGTCCTCACCGTCATCTCTGAAAATTTTTTTTCAATTAGTGGGTAATTAGGGGTAATTAGGAGGTAATCAGTGATCAAAAATTCCAAAAAAAAAAGTTTAGATAATTAGTTAGGGTAATGAAAACCAATAATTACCCATTATCGTCGTCGTCTTCATCTGAATCCTTCTTTTTCCGGTTTTCCTTTTTCATCGTCTTCTTTTTTGGCTTTTCTTCTTCCTCTTCCTCATCGTTGTCATCAGACTTGCCACGTCGAGATGTCGGACGTCTTCTTTTCTGAAAAAGTTTTGAATCTCAGAAGACGTCAAAATCACAAGAATCTTTGAAGACGTGCACTATTTCATATTCAGGGTTTCAAAAAACGTCAACTTTTCGAATTCAATTTTGAGTTTCAGAAAAAGGGACGTCTTCTAAACTTCAGAAAACTTCAAATTTTCAGACTCTGGGTTACAGAAAACGGTCTTCTGACTTTTGGAAATGTCACAGTTCTCAATTTCTGAATTTCAGAAGGTCCTTTTCTAAATACAGAATCTTAGAAAACGTGAAAAATTCTGAATTCCAGAAGGCGCCACAGCTTTAAATTCAGAATTTCGACGTCTTCTAAAATTCAGAAACCAAACTCACCGGAACGTCTCCTTCTTCCATCGGATCAAACTCCTCCTCCTCCTCTTCTTCATCCTTCTCATATCTCGACGGACGACCTCTTCTAGATGTTGGCTTCTTCTTCTTACGTGGCGATTCAGAATCCTCCACGTCTTCAGAATTCTCTTCCTCTTCTTCCTCCTTCTTCGGACGTCTTCTGACCTCCTTCTTCTTCTTATTCTCCTCCTCACGTCTTCTAGTACTGTACTTCTTATCCATCATACCCTCCAAATCATCCGAATCCTCCACGTCATCATTCTCCTCTTCTAGAAGCGC</canonical>
            <polymorphic>GTCTAATTAATGAGCAATTATCCAAAGTGCAATTAGAGAGAAGCAAAAAGTTCCCGTTGCGCGGTGAAGGCTGATGGAACCATTGTCCTCACCGTCATCTCTGAAAATTTTTTTTCAATTAGTGGGTAATTAGGGGTAATTAGGAGGTAATCAGTGATCAAAAATTCCAAAAAAAAAAGTTTAGATAATTAGTTAGGGTAATGAAAACCAATAATTACCCATTATCGTCGTCGTCTTCATCTGAATCCTTCTTTTTCCGGTTTTCCTTTTTCATCGTCTTCTTTTTTGGCTTTTCTTCTTCCTCTTCCTCATCGTTGTCATCAGACTTGCCACGTCGAGATGTCGGACGTCTTCTTTTCTGAAAAAGTTTTGAATCTCAGAAGACGTCAAAATCACAAGAATCTTTGAAGACGTGCACTATTTCATATTCAGGGTTTCAAAAAACGTCAACTTTTCGAATTCAATTTTGAGTTTCAGAAAAAGGGACGTCTTCTAAACTYCAGAAAACTTCAAATTTTCAGACTCTGGGTTACAGAAAACGGTCTTCTGACTTTTGGAAATGTCACAGTTCTCAATTTCTGAATTTCAGAAGGTCCTTTTCTAAATACAGAATCTTAGAAAACGTGAAAAATTCTGAATTCCAGAAGGCGCCACAGCTTTAAATTCAGAATTTCGACGTCTTCTAAAATTCAGAAACCAAACTCACCGGAACGTCTCCTTCTTCCATCGGATCAAACTCCTCCTCCTCCTCTTCTTCATCCTTCTCATATCTCGACGGACGACCTCTTCTAGATGTTGGCTTCTTCTTCTTACGTGGCGATTCAGAATCCTCCACGTCTTCAGAATTCTCTTCCTCTTCTTCCTCCTTCTTCGGACGTCTTCTGACCTCCTTCTTCTTCTTATTCTCCTCCTCACGTCTTCTAGTACTGTACTTCTTATCCATCATACCCTCCAAATCATCCGAATCCTCCACGTCATCATTCTCCTCTTCTAGAAGCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>140 102 97 95 81 79 47 38 37 32 32 31 28 26 25 22 19 18 18 15 10 8</canonical_bands>
                <polymorphic_bands>140 102 97 95 81 79 47 44 38 37 32 32 31 28 25 22 19 18 15 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGACGTCAAAATCACAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTTCACGTTTTCTAAGATTCTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGACGTCAAAATCACAAGAATCTTTGAAGACGTGCACTATTTCATATTCAGGGTTTCAAAAAACGTCAACTTTTCGAATTCAATTTTGAGTTTCAGAAAAAGGGACGTCTTCTAAACTTCAGAAAACTTCAAATTTTCAGACTCTGGGTTACAGAAAACGGTCTTCTGACTTTTGGAAATGTCACAGTTCTCAATTTCTGAATTTCAGAAGGTCCTTTTCTAAATACAGAATCTTAGAAAACGTGAAA</canonical_amplicon>
		<polymorphic_amplicon>GAAGACGTCAAAATCACAAGAATCTTTGAAGACGTGCACTATTTCATATTCAGGGTTTCAAAAAACGTCAACTTTTCGAATTCAATTTTGAGTTTCAGAAAAAGGGACGTCTTCTAAACTYCAGAAAACTTCAAATTTTCAGACTCTGGGTTACAGAAAACGGTCTTCTGACTTTTGGAAATGTCACAGTTCTCAATTTCTGAATTTCAGAAGGTCCTTTTCTAAATACAGAATCTTAGAAAACGTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15642</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>647929</contig_pos>
        <strand>+</strand>
        <context>TTACAGAAAA[C/T]GGTCTTCTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTCTAAACTTCAGAAAACTTCAAATTTTCAGACTCTGGGTTACAGAAAA</left_flank>
        <right_flank>GGTCTTCTGACTTTTGGAAATGTCACAGTTCTCAATTTCTGAATTTCAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCAAAAAGTTCCCGTTGCGCGGTGAAGGCTGATGGAACCATTGTCCTCACCGTCATCTCTGAAAATTTTTTTTCAATTAGTGGGTAATTAGGGGTAATTAGGAGGTAATCAGTGATCAAAAATTCCAAAAAAAAAAGTTTAGATAATTAGTTAGGGTAATGAAAACCAATAATTACCCATTATCGTCGTCGTCTTCATCTGAATCCTTCTTTTTCCGGTTTTCCTTTTTCATCGTCTTCTTTTTTGGCTTTTCTTCTTCCTCTTCCTCATCGTTGTCATCAGACTTGCCACGTCGAGATGTCGGACGTCTTCTTTTCTGAAAAAGTTTTGAATCTCAGAAGACGTCAAAATCACAAGAATCTTTGAAGACGTGCACTATTTCATATTCAGGGTTTCAAAAAACGTCAACTTTTCGAATTCAATTTTGAGTTTCAGAAAAAGGGACGTCTTCTAAACTTCAGAAAACTTCAAATTTTCAGACTCTGGGTTACAGAAAACGGTCTTCTGACTTTTGGAAATGTCACAGTTCTCAATTTCTGAATTTCAGAAGGTCCTTTTCTAAATACAGAATCTTAGAAAACGTGAAAAATTCTGAATTCCAGAAGGCGCCACAGCTTTAAATTCAGAATTTCGACGTCTTCTAAAATTCAGAAACCAAACTCACCGGAACGTCTCCTTCTTCCATCGGATCAAACTCCTCCTCCTCCTCTTCTTCATCCTTCTCATATCTCGACGGACGACCTCTTCTAGATGTTGGCTTCTTCTTCTTACGTGGCGATTCAGAATCCTCCACGTCTTCAGAATTCTCTTCCTCTTCTTCCTCCTTCTTCGGACGTCTTCTGACCTCCTTCTTCTTCTTATTCTCCTCCTCACGTCTTCTAGTACTGTACTTCTTATCCATCATACCCTCCAAATCATCCGAATCCTCCACGTCATCATTCTCCTCTTCTAGAAGCGCTTCTAGATCATCGTCATCGTCTCCAGAAATCCGTCTCATT</canonical>
            <polymorphic>AAGCAAAAAGTTCCCGTTGCGCGGTGAAGGCTGATGGAACCATTGTCCTCACCGTCATCTCTGAAAATTTTTTTTCAATTAGTGGGTAATTAGGGGTAATTAGGAGGTAATCAGTGATCAAAAATTCCAAAAAAAAAAGTTTAGATAATTAGTTAGGGTAATGAAAACCAATAATTACCCATTATCGTCGTCGTCTTCATCTGAATCCTTCTTTTTCCGGTTTTCCTTTTTCATCGTCTTCTTTTTTGGCTTTTCTTCTTCCTCTTCCTCATCGTTGTCATCAGACTTGCCACGTCGAGATGTCGGACGTCTTCTTTTCTGAAAAAGTTTTGAATCTCAGAAGACGTCAAAATCACAAGAATCTTTGAAGACGTGCACTATTTCATATTCAGGGTTTCAAAAAACGTCAACTTTTCGAATTCAATTTTGAGTTTCAGAAAAAGGGACGTCTTCTAAACTTCAGAAAACTTCAAATTTTCAGACTCTGGGTTACAGAAAAYGGTCTTCTGACTTTTGGAAATGTCACAGTTCTCAATTTCTGAATTTCAGAAGGTCCTTTTCTAAATACAGAATCTTAGAAAACGTGAAAAATTCTGAATTCCAGAAGGCGCCACAGCTTTAAATTCAGAATTTCGACGTCTTCTAAAATTCAGAAACCAAACTCACCGGAACGTCTCCTTCTTCCATCGGATCAAACTCCTCCTCCTCCTCTTCTTCATCCTTCTCATATCTCGACGGACGACCTCTTCTAGATGTTGGCTTCTTCTTCTTACGTGGCGATTCAGAATCCTCCACGTCTTCAGAATTCTCTTCCTCTTCTTCCTCCTTCTTCGGACGTCTTCTGACCTCCTTCTTCTTCTTATTCTCCTCCTCACGTCTTCTAGTACTGTACTTCTTATCCATCATACCCTCCAAATCATCCGAATCCTCCACGTCATCATTCTCCTCTTCTAGAAGCGCTTCTAGATCATCGTCATCGTCTCCAGAAATCCGTCTCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>448 361 112 53 26</canonical_bands>
                <polymorphic_bands>474 361 112 53</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAATTTTGAGTTTCAGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>GTGAGTTTGGTTTCTGAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCAATTTTGAGTTTCAGAAAAAGGGACGTCTTCTAAACTTCAGAAAACTTCAAATTTTCAGACTCTGGGTTACAGAAAACGGTCTTCTGACTTTTGGAAATGTCACAGTTCTCAATTTCTGAATTTCAGAAGGTCCTTTTCTAAATACAGAATCTTAGAAAACGTGAAAAATTCTGAATTCCAGAAGGCGCCACAGCTTTAAATTCAGAATTTCGACGTCTTCTAAAATTCAGAAACCAAACTCAC</canonical_amplicon>
		<polymorphic_amplicon>TCAATTTTGAGTTTCAGAAAAAGGGACGTCTTCTAAACTTCAGAAAACTTCAAATTTTCAGACTCTGGGTTACAGAAAAYGGTCTTCTGACTTTTGGAAATGTCACAGTTCTCAATTTCTGAATTTCAGAAGGTCCTTTTCTAAATACAGAATCTTAGAAAACGTGAAAAATTCTGAATTCCAGAAGGCGCCACAGCTTTAAATTCAGAATTTCGACGTCTTCTAAAATTCAGAAACCAAACTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15643</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>648164</contig_pos>
        <strand></strand>
        <context>tcATATCTCG[A/T]CGGACGACCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATCGGATCAAACTCCTCCTCCTCCTCTTCTTCATCCTTCTCATATCTCG</left_flank>
        <right_flank>CGGACGACCTCTTCTAGATGTTGGCTTCTTCTTCTTACGTGGCGATTCAG</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCTTCTTTTTTGGCTTTTCTTCTTCCTCTTCCTCATCGTTGTCATCAGACTTGCCACGTCGAGATGTCGGACGTCTTCTTTTCTGAAAAAGTTTTGAATCTCAGAAGACGTCAAAATCACAAGAATCTTTGAAGACGTGCACTATTTCATATTCAGGGTTTCAAAAAACGTCAACTTTTCGAATTCAATTTTGAGTTTCAGAAAAAGGGACGTCTTCTAAACTTCAGAAAACTTCAAATTTTCAGACTCTGGGTTACAGAAAACGGTCTTCTGACTTTTGGAAATGTCACAGTTCTCAATTTCTGAATTTCAGAAGGTCCTTTTCTAAATACAGAATCTTAGAAAACGTGAAAAATTCTGAATTCCAGAAGGCGCCACAGCTTTAAATTCAGAATTTCGACGTCTTCTAAAATTCAGAAACCAAACTCACCGGAACGTCTCCTTCTTCCATCGGATCAAACTCCTCCTCCTCCTCTTCTTCATCCTTCTCATATCTCGACGGACGACCTCTTCTAGATGTTGGCTTCTTCTTCTTACGTGGCGATTCAGAATCCTCCACGTCTTCAGAATTCTCTTCCTCTTCTTCCTCCTTCTTCGGACGTCTTCTGACCTCCTTCTTCTTCTTATTCTCCTCCTCACGTCTTCTAGTACTGTACTTCTTATCCATCATACCCTCCAAATCATCCGAATCCTCCACGTCATCATTCTCCTCTTCTAGAAGCGCTTCTAGATCATCGTCATCGTCTCCAGAAATCCGTCTCATTTTTCCCAGTAGATCCGACGTCTTCTTTTTCTCATCTGGAGACAAAAAGTCTTCAGAATCTCTAAAACGAGAGGCGATGGGGTGTGAGAAGATGTCGTCCGATGATTTCTGAAGAGATTCAGAAGATGGAATCACCAAATCGTCAGAATAGATGCCTTCTGAAACTGAGAAGCCGTCAGAATTCTGGAAGCCGTCGGGAAGTTCAGTGGCAAGGAAGGAGCAGACGAATGAGGTGG</canonical>
            <polymorphic>GTCTTCTTTTTTGGCTTTTCTTCTTCCTCTTCCTCATCGTTGTCATCAGACTTGCCACGTCGAGATGTCGGACGTCTTCTTTTCTGAAAAAGTTTTGAATCTCAGAAGACGTCAAAATCACAAGAATCTTTGAAGACGTGCACTATTTCATATTCAGGGTTTCAAAAAACGTCAACTTTTCGAATTCAATTTTGAGTTTCAGAAAAAGGGACGTCTTCTAAACTTCAGAAAACTTCAAATTTTCAGACTCTGGGTTACAGAAAACGGTCTTCTGACTTTTGGAAATGTCACAGTTCTCAATTTCTGAATTTCAGAAGGTCCTTTTCTAAATACAGAATCTTAGAAAACGTGAAAAATTCTGAATTCCAGAAGGCGCCACAGCTTTAAATTCAGAATTTCGACGTCTTCTAAAATTCAGAAACCAAACTCACCGGAACGTCTCCTTCTTCCATCGGATCAAACTCCTCCTCCTCCTCTTCTTCATCCTTCTCATATCTCGWCGGACGACCTCTTCTAGATGTTGGCTTCTTCTTCTTACGTGGCGATTCAGAATCCTCCACGTCTTCAGAATTCTCTTCCTCTTCTTCCTCCTTCTTCGGACGTCTTCTGACCTCCTTCTTCTTCTTATTCTCCTCCTCACGTCTTCTAGTACTGTACTTCTTATCCATCATACCCTCCAAATCATCCGAATCCTCCACGTCATCATTCTCCTCTTCTAGAAGCGCTTCTAGATCATCGTCATCGTCTCCAGAAATCCGTCTCATTTTTCCCAGTAGATCCGACGTCTTCTTTTTCTCATCTGGAGACAAAAAGTCTTCAGAATCTCTAAAACGAGAGGCGATGGGGTGTGAGAAGATGTCGTCCGATGATTTCTGAAGAGATTCAGAAGATGGAATCACCAAATCGTCAGAATAGATGCCTTCTGAAACTGAGAAGCCGTCAGAATTCTGGAAGCCGTCGGGAAGTTCAGTGGCAAGGAAGGAGCAGACGAATGAGGTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 218 120 99 61</canonical_bands>
                <polymorphic_bands>601 218 120 61</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>305 202 148 130 61 52 41 20 18 12 11</canonical_bands>
                <polymorphic_bands>305 202 148 148 61 52 41 20 12 11</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>341 282 176 99 62 40</canonical_bands>
                <polymorphic_bands>381 341 176 62 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGAATCTTAGAAAACGTGAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTCTGAAGACGTGGAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>ACAGAATCTTAGAAAACGTGAAAAATTCTGAATTCCAGAAGGCGCCACAGCTTTAAATTCAGAATTTCGACGTCTTCTAAAATTCAGAAACCAAACTCACCGGAACGTCTCCTTCTTCCATCGGATCAAACTCCTCCTCCTCCTCTTCTTCATCCTTCTCATATCTCGACGGACGACCTCTTCTAGATGTTGGCTTCTTCTTCTTACGTGGCGATTCAGAATCCTCCACGTCTTCAGAAT</canonical_amplicon>
		<polymorphic_amplicon>ACAGAATCTTAGAAAACGTGAAAAATTCTGAATTCCAGAAGGCGCCACAGCTTTAAATTCAGAATTTCGACGTCTTCTAAAATTCAGAAACCAAACTCACCGGAACGTCTCCTTCTTCCATCGGATCAAACTCCTCCTCCTCCTCTTCTTCATCCTTCTCATATCTCGWCGGACGACCTCTTCTAGATGTTGGCTTCTTCTTCTTACGTGGCGATTCAGAATCCTCCACGTCTTCAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15644</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>648189</contig_pos>
        <strand>+</strand>
        <context>TAGATGTTGG[C/G]TTCTTCTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCTTCTTCATCCTTCTCATATCTCGACGGACGACCTCTTCTAGATGTTGG</left_flank>
        <right_flank>TTCTTCTTCTTACGTGGCGATTCAGAATCCTCCACGTCTTCAGAATTCTC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTCTTCCTCATCGTTGTCATCAGACTTGCCACGTCGAGATGTCGGACGTCTTCTTTTCTGAAAAAGTTTTGAATCTCAGAAGACGTCAAAATCACAAGAATCTTTGAAGACGTGCACTATTTCATATTCAGGGTTTCAAAAAACGTCAACTTTTCGAATTCAATTTTGAGTTTCAGAAAAAGGGACGTCTTCTAAACTTCAGAAAACTTCAAATTTTCAGACTCTGGGTTACAGAAAACGGTCTTCTGACTTTTGGAAATGTCACAGTTCTCAATTTCTGAATTTCAGAAGGTCCTTTTCTAAATACAGAATCTTAGAAAACGTGAAAAATTCTGAATTCCAGAAGGCGCCACAGCTTTAAATTCAGAATTTCGACGTCTTCTAAAATTCAGAAACCAAACTCACCGGAACGTCTCCTTCTTCCATCGGATCAAACTCCTCCTCCTCCTCTTCTTCATCCTTCTCATATCTCGACGGACGACCTCTTCTAGATGTTGGCTTCTTCTTCTTACGTGGCGATTCAGAATCCTCCACGTCTTCAGAATTCTCTTCCTCTTCTTCCTCCTTCTTCGGACGTCTTCTGACCTCCTTCTTCTTCTTATTCTCCTCCTCACGTCTTCTAGTACTGTACTTCTTATCCATCATACCCTCCAAATCATCCGAATCCTCCACGTCATCATTCTCCTCTTCTAGAAGCGCTTCTAGATCATCGTCATCGTCTCCAGAAATCCGTCTCATTTTTCCCAGTAGATCCGACGTCTTCTTTTTCTCATCTGGAGACAAAAAGTCTTCAGAATCTCTAAAACGAGAGGCGATGGGGTGTGAGAAGATGTCGTCCGATGATTTCTGAAGAGATTCAGAAGATGGAATCACCAAATCGTCAGAATAGATGCCTTCTGAAACTGAGAAGCCGTCAGAATTCTGGAAGCCGTCGGGAAGTTCAGTGGCAAGGAAGGAGCAGACGAATGAGGTGGCGGAGAGTTGACGGACGTAGCGAGC</canonical>
            <polymorphic>CCTCTTCCTCATCGTTGTCATCAGACTTGCCACGTCGAGATGTCGGACGTCTTCTTTTCTGAAAAAGTTTTGAATCTCAGAAGACGTCAAAATCACAAGAATCTTTGAAGACGTGCACTATTTCATATTCAGGGTTTCAAAAAACGTCAACTTTTCGAATTCAATTTTGAGTTTCAGAAAAAGGGACGTCTTCTAAACTTCAGAAAACTTCAAATTTTCAGACTCTGGGTTACAGAAAACGGTCTTCTGACTTTTGGAAATGTCACAGTTCTCAATTTCTGAATTTCAGAAGGTCCTTTTCTAAATACAGAATCTTAGAAAACGTGAAAAATTCTGAATTCCAGAAGGCGCCACAGCTTTAAATTCAGAATTTCGACGTCTTCTAAAATTCAGAAACCAAACTCACCGGAACGTCTCCTTCTTCCATCGGATCAAACTCCTCCTCCTCCTCTTCTTCATCCTTCTCATATCTCGACGGACGACCTCTTCTAGATGTTGGSTTCTTCTTCTTACGTGGCGATTCAGAATCCTCCACGTCTTCAGAATTCTCTTCCTCTTCTTCCTCCTTCTTCGGACGTCTTCTGACCTCCTTCTTCTTCTTATTCTCCTCCTCACGTCTTCTAGTACTGTACTTCTTATCCATCATACCCTCCAAATCATCCGAATCCTCCACGTCATCATTCTCCTCTTCTAGAAGCGCTTCTAGATCATCGTCATCGTCTCCAGAAATCCGTCTCATTTTTCCCAGTAGATCCGACGTCTTCTTTTTCTCATCTGGAGACAAAAAGTCTTCAGAATCTCTAAAACGAGAGGCGATGGGGTGTGAGAAGATGTCGTCCGATGATTTCTGAAGAGATTCAGAAGATGGAATCACCAAATCGTCAGAATAGATGCCTTCTGAAACTGAGAAGCCGTCAGAATTCTGGAAGCCGTCGGGAAGTTCAGTGGCAAGGAAGGAGCAGACGAATGAGGTGGCGGAGAGTTGACGGACGTAGCGAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>412 356 143 71 18</canonical_bands>
                <polymorphic_bands>555 356 71 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAATTCAGAAACCAAACTCAC</pcr_primer_p1>
		<pcr_primer_p2>GGGTATGATGGATAAGAAGTACA</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>TAAAATTCAGAAACCAAACTCACCGGAACGTCTCCTTCTTCCATCGGATCAAACTCCTCCTCCTCCTCTTCTTCATCCTTCTCATATCTCGACGGACGACCTCTTCTAGATGTTGGCTTCTTCTTCTTACGTGGCGATTCAGAATCCTCCACGTCTTCAGAATTCTCTTCCTCTTCTTCCTCCTTCTTCGGACGTCTTCTGACCTCCTTCTTCTTCTTATTCTCCTCCTCACGTCTTCTAGTACTGTACTTCTTATCCATCATACCC</canonical_amplicon>
		<polymorphic_amplicon>TAAAATTCAGAAACCAAACTCACCGGAACGTCTCCTTCTTCCATCGGATCAAACTCCTCCTCCTCCTCTTCTTCATCCTTCTCATATCTCGACGGACGACCTCTTCTAGATGTTGGSTTCTTCTTCTTACGTGGCGATTCAGAATCCTCCACGTCTTCAGAATTCTCTTCCTCTTCTTCCTCCTTCTTCGGACGTCTTCTGACCTCCTTCTTCTTCTTATTCTCCTCCTCACGTCTTCTAGTACTGTACTTCTTATCCATCATACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15645</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>649893</contig_pos>
        <strand></strand>
        <context>TTRCGATTTT[C/T]CGATTTCTAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTT</left_flank>
        <right_flank>CGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTTGCTTTAAAAGAAGCCTATCCTATCCATGTACTCATGCTGAATTATCTCGGTTCCCATGAAAGATATCAAAAATTTATCAACTGATAAAATATTTATCATTTTATCAGCTACATTTAACCAGATGACAAGTTTCTGTTATCTCTTACAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTCGAAATTGCATTCGGTTGTTGTTTTGTTGATTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTACATGCCCTTTGAGCACAATTATCTCGATTTCTGTAAGAGATATCAAAAACATGTTGACTGATAAAATGTAGCTGATAGAAAGATGAATATTTCTTTAGTTGACAAAATTGTGATATCTCTTATGGGAACCGAGGTAATTAAGCTCAAAGGGCATAAAGGATGATCCTATTAGAAAAAATCGTTTTTCCTGAAAATGTAACATTTTTCTCAAAAGGTAAAATTAATTTTTTTAGGTAAAAATGCCGAAAATGTTCATTTTCCTCTTTCCTCTTCTCTTCCTTCTAATCGACGCCTCCACTGATTGCTCCCAACCAAACGCCTGCTACGGACTACCCGCCAACTGCCAACCCGACACAAATTGCCATGTGTTTTTCCGTTTCGATGCTCAAGGAAATCTGGATGTTCATCTGAATGACGTCATCGATCCGATGGATTATGTAGCCATGAC</canonical>
            <polymorphic>ACTTTGCTTTAAAAGAAGCCTATCCTATCCATGTACTCATGCTGAATTATCTCGGTTCCCATGAAAGATATCAAAAATTTATCAACTGATAAAATATTTATCATTTTATCAGCTACATTTAACCAGATGACAAGTTTCTGTTATCTCTTACAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTCGAAATTGCATTCGGTTGTTGTTTTGTTGATTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTYCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTACATGCCCTTTGAGCACAATTATCTCGATTTCTGTAAGAGATATCAAAAACATGTTGACTGATAAAATGTAGCTGATAGAAAGATGAATATTTCTTTAGTTGACAAAATTGTGATATCTCTTATGGGAACCGAGGTAATTAAGCTCAAAGGGCATAAAGGATGATCCTATTAGAAAAAATCGTTTTTCCTGAAAATGTAACATTTTTCTCAAAAGGTAAAATTAATTTTTTTAGGTAAAAATGCCGAAAATGTTCATTTTCCTCTTTCCTCTTCTCTTCCTTCTAATCGACGCCTCCACTGATTGCTCCCAACCAAACGCCTGCTACGGACTACCCGCCAACTGCCAACCCGACACAAATTGCCATGTGTTTTTCCGTTTCGATGCTCAAGGAAATCTGGATGTTCATCTGAATGACGTCATCGATCCGATGGATTATGTAGCCATGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>501 460 21 18</canonical_bands>
                <polymorphic_bands>961 21 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTGGGAAATTAGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTACAGGGTGGGATAAATGTT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTYCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15646</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>649885</contig_pos>
        <strand></strand>
        <context>ATTATTTTTT[A/G]CGATTTTYCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTT</left_flank>
        <right_flank>CGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGGCGTACTTTGCTTTAAAAGAAGCCTATCCTATCCATGTACTCATGCTGAATTATCTCGGTTCCCATGAAAGATATCAAAAATTTATCAACTGATAAAATATTTATCATTTTATCAGCTACATTTAACCAGATGACAAGTTTCTGTTATCTCTTACAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTCGAAATTGCATTCGGTTGTTGTTTTGTTGATTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTACATGCCCTTTGAGCACAATTATCTCGATTTCTGTAAGAGATATCAAAAACATGTTGACTGATAAAATGTAGCTGATAGAAAGATGAATATTTCTTTAGTTGACAAAATTGTGATATCTCTTATGGGAACCGAGGTAATTAAGCTCAAAGGGCATAAAGGATGATCCTATTAGAAAAAATCGTTTTTCCTGAAAATGTAACATTTTTCTCAAAAGGTAAAATTAATTTTTTTAGGTAAAAATGCCGAAAATGTTCATTTTCCTCTTTCCTCTTCTCTTCCTTCTAATCGACGCCTCCACTGATTGCTCCCAACCAAACGCCTGCTACGGACTACCCGCCAACTGCCAACCCGACACAAATTGCCATGTGTTTTTCCGTTTCGATGCTCAAGGAAATCTGGATGTTCATCTGAATGACGTCATCGATCCGATGGATTATGTA</canonical>
            <polymorphic>GAGGGCGTACTTTGCTTTAAAAGAAGCCTATCCTATCCATGTACTCATGCTGAATTATCTCGGTTCCCATGAAAGATATCAAAAATTTATCAACTGATAAAATATTTATCATTTTATCAGCTACATTTAACCAGATGACAAGTTTCTGTTATCTCTTACAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTCGAAATTGCATTCGGTTGTTGTTTTGTTGATTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTRCGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTACATGCCCTTTGAGCACAATTATCTCGATTTCTGTAAGAGATATCAAAAACATGTTGACTGATAAAATGTAGCTGATAGAAAGATGAATATTTCTTTAGTTGACAAAATTGTGATATCTCTTATGGGAACCGAGGTAATTAAGCTCAAAGGGCATAAAGGATGATCCTATTAGAAAAAATCGTTTTTCCTGAAAATGTAACATTTTTCTCAAAAGGTAAAATTAATTTTTTTAGGTAAAAATGCCGAAAATGTTCATTTTCCTCTTTCCTCTTCTCTTCCTTCTAATCGACGCCTCCACTGATTGCTCCCAACCAAACGCCTGCTACGGACTACCCGCCAACTGCCAACCCGACACAAATTGCCATGTGTTTTTCCGTTTCGATGCTCAAGGAAATCTGGATGTTCATCTGAATGACGTCATCGATCCGATGGATTATGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTGGGAAATTAGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTACAGGGTGGGATAAATGTT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTRCGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15647</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>649839</contig_pos>
        <strand></strand>
        <context>MAATRTTCCA[G/T]ATGCTAACTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCA</left_flank>
        <right_flank>ATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTTCTAAAGGAAGTGAGAAATTTGGTCTCAAAGTTGACTGTTTGGAGGGCGTACTTTGCTTTAAAAGAAGCCTATCCTATCCATGTACTCATGCTGAATTATCTCGGTTCCCATGAAAGATATCAAAAATTTATCAACTGATAAAATATTTATCATTTTATCAGCTACATTTAACCAGATGACAAGTTTCTGTTATCTCTTACAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTCGAAATTGCATTCGGTTGTTGTTTTGTTGATTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTACATGCCCTTTGAGCACAATTATCTCGATTTCTGTAAGAGATATCAAAAACATGTTGACTGATAAAATGTAGCTGATAGAAAGATGAATATTTCTTTAGTTGACAAAATTGTGATATCTCTTATGGGAACCGAGGTAATTAAGCTCAAAGGGCATAAAGGATGATCCTATTAGAAAAAATCGTTTTTCCTGAAAATGTAACATTTTTCTCAAAAGGTAAAATTAATTTTTTTAGGTAAAAATGCCGAAAATGTTCATTTTCCTCTTTCCTCTTCTCTTCCTTCTAATCGACGCCTCCACTGATTGCTCCCAACCAAACGCCTGCTACGGACTACCCGCCAACTGCCAACCCGACACAAATTGCCATGTGTTTTTCCGTTTCGATGCTCAAGGAAA</canonical>
            <polymorphic>ATCTTCTAAAGGAAGTGAGAAATTTGGTCTCAAAGTTGACTGTTTGGAGGGCGTACTTTGCTTTAAAAGAAGCCTATCCTATCCATGTACTCATGCTGAATTATCTCGGTTCCCATGAAAGATATCAAAAATTTATCAACTGATAAAATATTTATCATTTTATCAGCTACATTTAACCAGATGACAAGTTTCTGTTATCTCTTACAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTCGAAATTGCATTCGGTTGTTGTTTTGTTGATTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAKATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTACATGCCCTTTGAGCACAATTATCTCGATTTCTGTAAGAGATATCAAAAACATGTTGACTGATAAAATGTAGCTGATAGAAAGATGAATATTTCTTTAGTTGACAAAATTGTGATATCTCTTATGGGAACCGAGGTAATTAAGCTCAAAGGGCATAAAGGATGATCCTATTAGAAAAAATCGTTTTTCCTGAAAATGTAACATTTTTCTCAAAAGGTAAAATTAATTTTTTTAGGTAAAAATGCCGAAAATGTTCATTTTCCTCTTTCCTCTTCTCTTCCTTCTAATCGACGCCTCCACTGATTGCTCCCAACCAAACGCCTGCTACGGACTACCCGCCAACTGCCAACCCGACACAAATTGCCATGTGTTTTTCCGTTTCGATGCTCAAGGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>497 207 164 132</canonical_bands>
                <polymorphic_bands>629 207 164</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTGGGAAATTAGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTACAGGGTGGGATAAATGTT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAKATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15648</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>649829</contig_pos>
        <strand>+</strand>
        <context>CGCGAATTTT[A/C]AATRTTCCAK</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTT</left_flank>
        <right_flank>AATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTTTGATATCTTCTAAAGGAAGTGAGAAATTTGGTCTCAAAGTTGACTGTTTGGAGGGCGTACTTTGCTTTAAAAGAAGCCTATCCTATCCATGTACTCATGCTGAATTATCTCGGTTCCCATGAAAGATATCAAAAATTTATCAACTGATAAAATATTTATCATTTTATCAGCTACATTTAACCAGATGACAAGTTTCTGTTATCTCTTACAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTCGAAATTGCATTCGGTTGTTGTTTTGTTGATTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTACATGCCCTTTGAGCACAATTATCTCGATTTCTGTAAGAGATATCAAAAACATGTTGACTGATAAAATGTAGCTGATAGAAAGATGAATATTTCTTTAGTTGACAAAATTGTGATATCTCTTATGGGAACCGAGGTAATTAAGCTCAAAGGGCATAAAGGATGATCCTATTAGAAAAAATCGTTTTTCCTGAAAATGTAACATTTTTCTCAAAAGGTAAAATTAATTTTTTTAGGTAAAAATGCCGAAAATGTTCATTTTCCTCTTTCCTCTTCTCTTCCTTCTAATCGACGCCTCCACTGATTGCTCCCAACCAAACGCCTGCTACGGACTACCCGCCAACTGCCAACCCGACACAAATTGCCATGTGTTTTTCCGTTTCGATG</canonical>
            <polymorphic>TATTTTTGATATCTTCTAAAGGAAGTGAGAAATTTGGTCTCAAAGTTGACTGTTTGGAGGGCGTACTTTGCTTTAAAAGAAGCCTATCCTATCCATGTACTCATGCTGAATTATCTCGGTTCCCATGAAAGATATCAAAAATTTATCAACTGATAAAATATTTATCATTTTATCAGCTACATTTAACCAGATGACAAGTTTCTGTTATCTCTTACAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTCGAAATTGCATTCGGTTGTTGTTTTGTTGATTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTMAATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTACATGCCCTTTGAGCACAATTATCTCGATTTCTGTAAGAGATATCAAAAACATGTTGACTGATAAAATGTAGCTGATAGAAAGATGAATATTTCTTTAGTTGACAAAATTGTGATATCTCTTATGGGAACCGAGGTAATTAAGCTCAAAGGGCATAAAGGATGATCCTATTAGAAAAAATCGTTTTTCCTGAAAATGTAACATTTTTCTCAAAAGGTAAAATTAATTTTTTTAGGTAAAAATGCCGAAAATGTTCATTTTCCTCTTTCCTCTTCTCTTCCTTCTAATCGACGCCTCCACTGATTGCTCCCAACCAAACGCCTGCTACGGACTACCCGCCAACTGCCAACCCGACACAAATTGCCATGTGTTTTTCCGTTTCGATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>500 169 114 109 49 30 22 7</canonical_bands>
                <polymorphic_bands>507 169 114 109 49 30 22</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 239 115 74 71</canonical_bands>
                <polymorphic_bands>572 239 115 74</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>256 163 129 115 110 83 73 37 34</canonical_bands>
                <polymorphic_bands>293 163 129 115 110 83 73 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTGGGAAATTAGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTACAGGGTGGGATAAATGTT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTMAATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15681</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>649705</contig_pos>
        <strand>+</strand>
        <context>TGTTGTTTTG[A/T]TGATTTTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGAAAAAAAGAGAAAAAGTGAGTCGAAATTGCATTCGGTTGTTGTTTTG</left_flank>
        <right_flank>TGATTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCGATAGAATCATCATATGTGCCCTTTGAGCTCAATAATCTCGGTTCCTATAAAAGATATCAAAATTTTGTCCACTGATGAAATGCTCATCATTTTATCAGCTACATTTCATTAATTGGCTTATTTTTGATATCTTCTAAAGGAAGTGAGAAATTTGGTCTCAAAGTTGACTGTTTGGAGGGCGTACTTTGCTTTAAAAGAAGCCTATCCTATCCATGTACTCATGCTGAATTATCTCGGTTCCCATGAAAGATATCAAAAATTTATCAACTGATAAAATATTTATCATTTTATCAGCTACATTTAACCAGATGACAAGTTTCTGTTATCTCTTACAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTCGAAATTGCATTCGGTTGTTGTTTTGTTGATTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTACATGCCCTTTGAGCACAATTATCTCGATTTCTGTAAGAGATATCAAAAACATGTTGACTGATAAAATGTAGCTGATAGAAAGATGAATATTTCTTTAGTTGACAAAATTGTGATATCTCTTATGGGAACCGAGGTAATTAAGCTCAAAGGGCATAAAGGATGATCCTATTAGAAAAAATCGTTTTTCCTGAAAATGTAACATTTTTCTCAAAAGGTAAAATTAATTTTTTTAGGTAAAAATGCCGAAAATGTTCATTTTC</canonical>
            <polymorphic>TTTCCGATAGAATCATCATATGTGCCCTTTGAGCTCAATAATCTCGGTTCCTATAAAAGATATCAAAATTTTGTCCACTGATGAAATGCTCATCATTTTATCAGCTACATTTCATTAATTGGCTTATTTTTGATATCTTCTAAAGGAAGTGAGAAATTTGGTCTCAAAGTTGACTGTTTGGAGGGCGTACTTTGCTTTAAAAGAAGCCTATCCTATCCATGTACTCATGCTGAATTATCTCGGTTCCCATGAAAGATATCAAAAATTTATCAACTGATAAAATATTTATCATTTTATCAGCTACATTTAACCAGATGACAAGTTTCTGTTATCTCTTACAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTCGAAATTGCATTCGGTTGTTGTTTTGWTGATTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTACATGCCCTTTGAGCACAATTATCTCGATTTCTGTAAGAGATATCAAAAACATGTTGACTGATAAAATGTAGCTGATAGAAAGATGAATATTTCTTTAGTTGACAAAATTGTGATATCTCTTATGGGAACCGAGGTAATTAAGCTCAAAGGGCATAAAGGATGATCCTATTAGAAAAAATCGTTTTTCCTGAAAATGTAACATTTTTCTCAAAAGGTAAAATTAATTTTTTTAGGTAAAAATGCCGAAAATGTTCATTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAAATACGGTAACAAGTACG</pcr_primer_p1>
		<pcr_primer_p2>ACAATGAGGCAAAGTTAGCA</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>GCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTCGAAATTGCATTCGGTTGTTGTTTTGTTGATTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGT</canonical_amplicon>
		<polymorphic_amplicon>GCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTCGAAATTGCATTCGGTTGTTGTTTTGWTGATTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15682</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>649658</contig_pos>
        <strand></strand>
        <context>GAAAAAATCG[A/G]AAAAAAGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCG</left_flank>
        <right_flank>AAAAAAGAGAAAAAGTGAGTCGAAATTGCATTCGGTTGTTGTTTTGTTGA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTACATTTTCAGAAAAATGTTAGATTTTCAGAAAAAAAAACGATTTTTTCCGATAGAATCATCATATGTGCCCTTTGAGCTCAATAATCTCGGTTCCTATAAAAGATATCAAAATTTTGTCCACTGATGAAATGCTCATCATTTTATCAGCTACATTTCATTAATTGGCTTATTTTTGATATCTTCTAAAGGAAGTGAGAAATTTGGTCTCAAAGTTGACTGTTTGGAGGGCGTACTTTGCTTTAAAAGAAGCCTATCCTATCCATGTACTCATGCTGAATTATCTCGGTTCCCATGAAAGATATCAAAAATTTATCAACTGATAAAATATTTATCATTTTATCAGCTACATTTAACCAGATGACAAGTTTCTGTTATCTCTTACAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTCGAAATTGCATTCGGTTGTTGTTTTGTTGATTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTACATGCCCTTTGAGCACAATTATCTCGATTTCTGTAAGAGATATCAAAAACATGTTGACTGATAAAATGTAGCTGATAGAAAGATGAATATTTCTTTAGTTGACAAAATTGTGATATCTCTTATGGGAACCGAGGTAATTAAGCTCAAAGGGCATAAAGGATGATCCTATTAGAAAAAATCGTTTTTCCTGAAAATGTAACATTTTTCTCAAAA</canonical>
            <polymorphic>TTTACATTTTCAGAAAAATGTTAGATTTTCAGAAAAAAAAACGATTTTTTCCGATAGAATCATCATATGTGCCCTTTGAGCTCAATAATCTCGGTTCCTATAAAAGATATCAAAATTTTGTCCACTGATGAAATGCTCATCATTTTATCAGCTACATTTCATTAATTGGCTTATTTTTGATATCTTCTAAAGGAAGTGAGAAATTTGGTCTCAAAGTTGACTGTTTGGAGGGCGTACTTTGCTTTAAAAGAAGCCTATCCTATCCATGTACTCATGCTGAATTATCTCGGTTCCCATGAAAGATATCAAAAATTTATCAACTGATAAAATATTTATCATTTTATCAGCTACATTTAACCAGATGACAAGTTTCTGTTATCTCTTACAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCGRAAAAAAGAGAAAAAGTGAGTCGAAATTGCATTCGGTTGTTGTTTTGTTGATTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTACATGCCCTTTGAGCACAATTATCTCGATTTCTGTAAGAGATATCAAAAACATGTTGACTGATAAAATGTAGCTGATAGAAAGATGAATATTTCTTTAGTTGACAAAATTGTGATATCTCTTATGGGAACCGAGGTAATTAAGCTCAAAGGGCATAAAGGATGATCCTATTAGAAAAAATCGTTTTTCCTGAAAATGTAACATTTTTCTCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 195 188 96 23</canonical_bands>
                <polymorphic_bands>521 195 188 96</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAAATACGGTAACAAGTACG</pcr_primer_p1>
		<pcr_primer_p2>ACAATGAGGCAAAGTTAGCA</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>GCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTCGAAATTGCATTCGGTTGTTGTTTTGTTGATTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGT</canonical_amplicon>
		<polymorphic_amplicon>GCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCGRAAAAAAGAGAAAAAGTGAGTCGAAATTGCATTCGGTTGTTGTTTTGTTGATTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15683</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>649592</contig_pos>
        <strand></strand>
        <context>TGCGCACATA[G/A]GGTTTGTTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TACAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATA</left_flank>
        <right_flank>GGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAAGGAAGAGAAGAGGAAAGAGGAAAATGAACATTTTCGGCATTTTTACCTGAAAAAAGTTGATTTTACATTTTCAGAAAAATGTTAGATTTTCAGAAAAAAAAACGATTTTTTCCGATAGAATCATCATATGTGCCCTTTGAGCTCAATAATCTCGGTTCCTATAAAAGATATCAAAATTTTGTCCACTGATGAAATGCTCATCATTTTATCAGCTACATTTCATTAATTGGCTTATTTTTGATATCTTCTAAAGGAAGTGAGAAATTTGGTCTCAAAGTTGACTGTTTGGAGGGCGTACTTTGCTTTAAAAGAAGCCTATCCTATCCATGTACTCATGCTGAATTATCTCGGTTCCCATGAAAGATATCAAAAATTTATCAACTGATAAAATATTTATCATTTTATCAGCTACATTTAACCAGATGACAAGTTTCTGTTATCTCTTACAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTCGAAATTGCATTCGGTTGTTGTTTTGTTGATTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTACATGCCCTTTGAGCACAATTATCTCGATTTCTGTAAGAGATATCAAAAACATGTTGACTGATAAAATGTAGCTGATAGAAAGATGAATATTTCTTTAGTTGACAAAATTGTGATATCTCTTATGGGAACCGAGGTAATTAAGCTCAA</canonical>
            <polymorphic>TAGAAGGAAGAGAAGAGGAAAGAGGAAAATGAACATTTTCGGCATTTTTACCTGAAAAAAGTTGATTTTACATTTTCAGAAAAATGTTAGATTTTCAGAAAAAAAAACGATTTTTTCCGATAGAATCATCATATGTGCCCTTTGAGCTCAATAATCTCGGTTCCTATAAAAGATATCAAAATTTTGTCCACTGATGAAATGCTCATCATTTTATCAGCTACATTTCATTAATTGGCTTATTTTTGATATCTTCTAAAGGAAGTGAGAAATTTGGTCTCAAAGTTGACTGTTTGGAGGGCGTACTTTGCTTTAAAAGAAGCCTATCCTATCCATGTACTCATGCTGAATTATCTCGGTTCCCATGAAAGATATCAAAAATTTATCAACTGATAAAATATTTATCATTTTATCAGCTACATTTAACCAGATGACAAGTTTCTGTTATCTCTTACAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATARGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTCGAAATTGCATTCGGTTGTTGTTTTGTTGATTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTACATGCCCTTTGAGCACAATTATCTCGATTTCTGTAAGAGATATCAAAAACATGTTGACTGATAAAATGTAGCTGATAGAAAGATGAATATTTCTTTAGTTGACAAAATTGTGATATCTCTTATGGGAACCGAGGTAATTAAGCTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCCTATCCTATCCATGTACTC</pcr_primer_p1>
		<pcr_primer_p2>TCGACTCACTTTTTCTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>AAGCCTATCCTATCCATGTACTCATGCTGAATTATCTCGGTTCCCATGAAAGATATCAAAAATTTATCAACTGATAAAATATTTATCATTTTATCAGCTACATTTAACCAGATGACAAGTTTCTGTTATCTCTTACAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTCGA</canonical_amplicon>
		<polymorphic_amplicon>AAGCCTATCCTATCCATGTACTCATGCTGAATTATCTCGGTTCCCATGAAAGATATCAAAAATTTATCAACTGATAAAATATTTATCATTTTATCAGCTACATTTAACCAGATGACAAGTTTCTGTTATCTCTTACAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATARGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15687</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>782791</contig_pos>
        <strand>+</strand>
        <context>CGCCCATTTG[A/T]CGAATATTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTCTCCATTCCAACAAATAGTTGCTTCCACATGGCGACGCCCATTTG</left_flank>
        <right_flank>CGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTCCGAGGGGGCGGAGTCAACGGAGCCGACGGAACTGGCAACGCCTACAGAAGAAATGGCGGTGGAAATGGAGGTGGAAGGAACATCGGCGGTCTTCCGACGTCTTCAGGAGTCGCTCCACCACAATGGGCGGTGGATGCTGCGGTGGTGGCGGGTGTGGATAATTATTTTTCAAAAAAAAAAGTGTTTTTGTATTTTTTAATTGTAATTTTTTAAATGTGATTTTCTTGCCTTTATCATATGTAAATACTACTAAAATCCCTTTGAAGTCGTGCTTTTTGTGCCCCAAATTATCGACTTTTTCACCTGAATCTGCCCCGAAAACTCCAGAATCACTCCAGAATTCGTCGACTTGATGACCTTGAAAAATACGTCTAAAACAGCTTCACACTCGATTTCTGACTGCGAAAAGTGCTTCATGAGCTCGCCGAAAACCCGGACTCGCTCCTTTTTCTCCATTCCAACAAATAGTTGCTTCCACATGGCGACGCCCATTTGACGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACAGATTGTAGAAAAATCAACATCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTCTTTTCTCACTGAAAACGATGCTCCGAAATCCCGCTTGCGCGCGTTGTTTAATCCACAAGAGCCGCCCATGTCATTTTTCAGCGGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTCGCC</canonical>
            <polymorphic>CGTCCGAGGGGGCGGAGTCAACGGAGCCGACGGAACTGGCAACGCCTACAGAAGAAATGGCGGTGGAAATGGAGGTGGAAGGAACATCGGCGGTCTTCCGACGTCTTCAGGAGTCGCTCCACCACAATGGGCGGTGGATGCTGCGGTGGTGGCGGGTGTGGATAATTATTTTTCAAAAAAAAAAGTGTTTTTGTATTTTTTAATTGTAATTTTTTAAATGTGATTTTCTTGCCTTTATCATATGTAAATACTACTAAAATCCCTTTGAAGTCGTGCTTTTTGTGCCCCAAATTATCGACTTTTTCACCTGAATCTGCCCCGAAAACTCCAGAATCACTCCAGAATTCGTCGACTTGATGACCTTGAAAAATACGTCTAAAACAGCTTCACACTCGATTTCTGACTGCGAAAAGTGCTTCATGAGCTCGCCGAAAACCCGGACTCGCTCCTTTTTCTCCATTCCAACAAATAGTTGCTTCCACATGGCGACGCCCATTTGWCGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACAGATTGTAGAAAAATCAACATCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTCTTTTCTCACTGAAAACGATGCTCCGAAATCCCGCTTGCGCGCGTTGTTTAATCCACAAGAGCCGCCCATGTCATTTTTCAGCGGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTCGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTCCATTCCAACAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTTTTCAGTGAGAAAAGAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTCCATTCCAACAAATAGTTGCTTCCACATGGCGACGCCCATTTGACGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACAGATTGTAGAAAAATCAACATCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTCTTTTCTCACTGAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTCCATTCCAACAAATAGTTGCTTCCACATGGCGACGCCCATTTGWCGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACAGATTGTAGAAAAATCAACATCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTCTTTTCTCACTGAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15688</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>782879</contig_pos>
        <strand>+</strand>
        <context>CTGGAAAACA[A/G]ATTKTAGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACA</left_flank>
        <right_flank>ATTGTAGAAAAATCAACATCAAATTCGTTTTAGGTCCCAAATTGCGAAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCGGTCTTCCGACGTCTTCAGGAGTCGCTCCACCACAATGGGCGGTGGATGCTGCGGTGGTGGCGGGTGTGGATAATTATTTTTCAAAAAAAAAAGTGTTTTTGTATTTTTTAATTGTAATTTTTTAAATGTGATTTTCTTGCCTTTATCATATGTAAATACTACTAAAATCCCTTTGAAGTCGTGCTTTTTGTGCCCCAAATTATCGACTTTTTCACCTGAATCTGCCCCGAAAACTCCAGAATCACTCCAGAATTCGTCGACTTGATGACCTTGAAAAATACGTCTAAAACAGCTTCACACTCGATTTCTGACTGCGAAAAGTGCTTCATGAGCTCGCCGAAAACCCGGACTCGCTCCTTTTTCTCCATTCCAACAAATAGTTGCTTCCACATGGCGACGCCCATTTGACGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACAGATTGTAGAAAAATCAACATCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTCTTTTCTCACTGAAAACGATGCTCCGAAATCCCGCTTGCGCGCGTTGTTTAATCCACAAGAGCCGCCCATGTCATTTTTCAGCGGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTCGCCCGTCTCATTTTTGAGTGGTTTTTGGGTCAAAATAAGGGTTATAAAATGGTTTTTCGACTGAAAAGTGAAAGAAAATGCAAGAAAATCA</canonical>
            <polymorphic>GGCGGTCTTCCGACGTCTTCAGGAGTCGCTCCACCACAATGGGCGGTGGATGCTGCGGTGGTGGCGGGTGTGGATAATTATTTTTCAAAAAAAAAAGTGTTTTTGTATTTTTTAATTGTAATTTTTTAAATGTGATTTTCTTGCCTTTATCATATGTAAATACTACTAAAATCCCTTTGAAGTCGTGCTTTTTGTGCCCCAAATTATCGACTTTTTCACCTGAATCTGCCCCGAAAACTCCAGAATCACTCCAGAATTCGTCGACTTGATGACCTTGAAAAATACGTCTAAAACAGCTTCACACTCGATTTCTGACTGCGAAAAGTGCTTCATGAGCTCGCCGAAAACCCGGACTCGCTCCTTTTTCTCCATTCCAACAAATAGTTGCTTCCACATGGCGACGCCCATTTGACGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACARATTGTAGAAAAATCAACATCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTCTTTTCTCACTGAAAACGATGCTCCGAAATCCCGCTTGCGCGCGTTGTTTAATCCACAAGAGCCGCCCATGTCATTTTTCAGCGGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTCGCCCGTCTCATTTTTGAGTGGTTTTTGGGTCAAAATAAGGGTTATAAAATGGTTTTTCGACTGAAAAGTGAAAGAAAATGCAAGAAAATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCCATTCCAACAAATAGT</pcr_primer_p1>
		<pcr_primer_p2>GTTTTCAGTGAGAAAAGAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCCATTCCAACAAATAGTTGCTTCCACATGGCGACGCCCATTTGACGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACAGATTGTAGAAAAATCAACATCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTCTTTTCTCACTGAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCCATTCCAACAAATAGTTGCTTCCACATGGCGACGCCCATTTGACGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACARATTGTAGAAAAATCAACATCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTCTTTTCTCACTGAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15689</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>782883</contig_pos>
        <strand>+</strand>
        <context>AAAACARATT[G/T]TAGAAAAATC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACAGATT</left_flank>
        <right_flank>TAGAAAAATCAACATCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTTCCGACGTCTTCAGGAGTCGCTCCACCACAATGGGCGGTGGATGCTGCGGTGGTGGCGGGTGTGGATAATTATTTTTCAAAAAAAAAAGTGTTTTTGTATTTTTTAATTGTAATTTTTTAAATGTGATTTTCTTGCCTTTATCATATGTAAATACTACTAAAATCCCTTTGAAGTCGTGCTTTTTGTGCCCCAAATTATCGACTTTTTCACCTGAATCTGCCCCGAAAACTCCAGAATCACTCCAGAATTCGTCGACTTGATGACCTTGAAAAATACGTCTAAAACAGCTTCACACTCGATTTCTGACTGCGAAAAGTGCTTCATGAGCTCGCCGAAAACCCGGACTCGCTCCTTTTTCTCCATTCCAACAAATAGTTGCTTCCACATGGCGACGCCCATTTGACGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACAGATTGTAGAAAAATCAACATCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTCTTTTCTCACTGAAAACGATGCTCCGAAATCCCGCTTGCGCGCGTTGTTTAATCCACAAGAGCCGCCCATGTCATTTTTCAGCGGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTCGCCCGTCTCATTTTTGAGTGGTTTTTGGGTCAAAATAAGGGTTATAAAATGGTTTTTCGACTGAAAAGTGAAAGAAAATGCAAGAAAATCAATTT</canonical>
            <polymorphic>GTCTTCCGACGTCTTCAGGAGTCGCTCCACCACAATGGGCGGTGGATGCTGCGGTGGTGGCGGGTGTGGATAATTATTTTTCAAAAAAAAAAGTGTTTTTGTATTTTTTAATTGTAATTTTTTAAATGTGATTTTCTTGCCTTTATCATATGTAAATACTACTAAAATCCCTTTGAAGTCGTGCTTTTTGTGCCCCAAATTATCGACTTTTTCACCTGAATCTGCCCCGAAAACTCCAGAATCACTCCAGAATTCGTCGACTTGATGACCTTGAAAAATACGTCTAAAACAGCTTCACACTCGATTTCTGACTGCGAAAAGTGCTTCATGAGCTCGCCGAAAACCCGGACTCGCTCCTTTTTCTCCATTCCAACAAATAGTTGCTTCCACATGGCGACGCCCATTTGACGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACAGATTKTAGAAAAATCAACATCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTCTTTTCTCACTGAAAACGATGCTCCGAAATCCCGCTTGCGCGCGTTGTTTAATCCACAAGAGCCGCCCATGTCATTTTTCAGCGGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTCGCCCGTCTCATTTTTGAGTGGTTTTTGGGTCAAAATAAGGGTTATAAAATGGTTTTTCGACTGAAAAGTGAAAGAAAATGCAAGAAAATCAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCCATTCCAACAAATAGT</pcr_primer_p1>
		<pcr_primer_p2>GTTTTCAGTGAGAAAAGAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCCATTCCAACAAATAGTTGCTTCCACATGGCGACGCCCATTTGACGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACAGATTGTAGAAAAATCAACATCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTCTTTTCTCACTGAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCCATTCCAACAAATAGTTGCTTCCACATGGCGACGCCCATTTGACGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACAGATTKTAGAAAAATCAACATCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTCTTTTCTCACTGAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15690</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>782897</contig_pos>
        <strand>+</strand>
        <context>AAAAATCAAC[A/G]TCAAATTCGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGATGGGTCGTGGAGAATTTCTGGAAAACAGATTGTAGAAAAATCAAC</left_flank>
        <right_flank>TCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGGAGTCGCTCCACCACAATGGGCGGTGGATGCTGCGGTGGTGGCGGGTGTGGATAATTATTTTTCAAAAAAAAAAGTGTTTTTGTATTTTTTAATTGTAATTTTTTAAATGTGATTTTCTTGCCTTTATCATATGTAAATACTACTAAAATCCCTTTGAAGTCGTGCTTTTTGTGCCCCAAATTATCGACTTTTTCACCTGAATCTGCCCCGAAAACTCCAGAATCACTCCAGAATTCGTCGACTTGATGACCTTGAAAAATACGTCTAAAACAGCTTCACACTCGATTTCTGACTGCGAAAAGTGCTTCATGAGCTCGCCGAAAACCCGGACTCGCTCCTTTTTCTCCATTCCAACAAATAGTTGCTTCCACATGGCGACGCCCATTTGACGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACAGATTGTAGAAAAATCAACATCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTCTTTTCTCACTGAAAACGATGCTCCGAAATCCCGCTTGCGCGCGTTGTTTAATCCACAAGAGCCGCCCATGTCATTTTTCAGCGGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTCGCCCGTCTCATTTTTGAGTGGTTTTTGGGTCAAAATAAGGGTTATAAAATGGTTTTTCGACTGAAAAGTGAAAGAAAATGCAAGAAAATCAATTTTTTGGACAATTTTT</canonical>
            <polymorphic>TCAGGAGTCGCTCCACCACAATGGGCGGTGGATGCTGCGGTGGTGGCGGGTGTGGATAATTATTTTTCAAAAAAAAAAGTGTTTTTGTATTTTTTAATTGTAATTTTTTAAATGTGATTTTCTTGCCTTTATCATATGTAAATACTACTAAAATCCCTTTGAAGTCGTGCTTTTTGTGCCCCAAATTATCGACTTTTTCACCTGAATCTGCCCCGAAAACTCCAGAATCACTCCAGAATTCGTCGACTTGATGACCTTGAAAAATACGTCTAAAACAGCTTCACACTCGATTTCTGACTGCGAAAAGTGCTTCATGAGCTCGCCGAAAACCCGGACTCGCTCCTTTTTCTCCATTCCAACAAATAGTTGCTTCCACATGGCGACGCCCATTTGACGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACAGATTGTAGAAAAATCAACRTCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTCTTTTCTCACTGAAAACGATGCTCCGAAATCCCGCTTGCGCGCGTTGTTTAATCCACAAGAGCCGCCCATGTCATTTTTCAGCGGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTCGCCCGTCTCATTTTTGAGTGGTTTTTGGGTCAAAATAAGGGTTATAAAATGGTTTTTCGACTGAAAAGTGAAAGAAAATGCAAGAAAATCAATTTTTTGGACAATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCCATTCCAACAAATAGT</pcr_primer_p1>
		<pcr_primer_p2>GTTTTCAGTGAGAAAAGAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCCATTCCAACAAATAGTTGCTTCCACATGGCGACGCCCATTTGACGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACAGATTGTAGAAAAATCAACATCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTCTTTTCTCACTGAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCCATTCCAACAAATAGTTGCTTCCACATGGCGACGCCCATTTGACGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACAGATTGTAGAAAAATCAACRTCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTCTTTTCTCACTGAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15713</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>782993</contig_pos>
        <strand>+</strand>
        <context>AAATCCCGCT[C/T]GCGCGCGTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAAATTCCCACTCTTTTCTCACTGAAAACGATGCTCCGAAATCCCGCT</left_flank>
        <right_flank>GCGCGCGTTGTTTAATCCACAAGAGCCGCCCATGTCATTTTTCAGCGGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGTAATTTTTTAAATGTGATTTTCTTGCCTTTATCATATGTAAATACTACTAAAATCCCTTTGAAGTCGTGCTTTTTGTGCCCCAAATTATCGACTTTTTCACCTGAATCTGCCCCGAAAACTCCAGAATCACTCCAGAATTCGTCGACTTGATGACCTTGAAAAATACGTCTAAAACAGCTTCACACTCGATTTCTGACTGCGAAAAGTGCTTCATGAGCTCGCCGAAAACCCGGACTCGCTCCTTTTTCTCCATTCCAACAAATAGTTGCTTCCACATGGCGACGCCCATTTGACGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACAGATTGTAGAAAAATCAACATCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTCTTTTCTCACTGAAAACGATGCTCCGAAATCCCGCTTGCGCGCGTTGTTTAATCCACAAGAGCCGCCCATGTCATTTTTCAGCGGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTCGCCCGTCTCATTTTTGAGTGGTTTTTGGGTCAAAATAAGGGTTATAAAATGGTTTTTCGACTGAAAAGTGAAAGAAAATGCAAGAAAATCAATTTTTTGGACAATTTTTGACAGTGAAGTTTCGATTTTTTTGAATTTTAGGTCAATTTTCCAAAAAAAATTTCGAAAAAATTCAAATTTTGAGATTTTCGCCTCAATTTCAAAG</canonical>
            <polymorphic>ATTGTAATTTTTTAAATGTGATTTTCTTGCCTTTATCATATGTAAATACTACTAAAATCCCTTTGAAGTCGTGCTTTTTGTGCCCCAAATTATCGACTTTTTCACCTGAATCTGCCCCGAAAACTCCAGAATCACTCCAGAATTCGTCGACTTGATGACCTTGAAAAATACGTCTAAAACAGCTTCACACTCGATTTCTGACTGCGAAAAGTGCTTCATGAGCTCGCCGAAAACCCGGACTCGCTCCTTTTTCTCCATTCCAACAAATAGTTGCTTCCACATGGCGACGCCCATTTGACGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACAGATTGTAGAAAAATCAACATCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTCTTTTCTCACTGAAAACGATGCTCCGAAATCCCGCTYGCGCGCGTTGTTTAATCCACAAGAGCCGCCCATGTCATTTTTCAGCGGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTCGCCCGTCTCATTTTTGAGTGGTTTTTGGGTCAAAATAAGGGTTATAAAATGGTTTTTCGACTGAAAAGTGAAAGAAAATGCAAGAAAATCAATTTTTTGGACAATTTTTGACAGTGAAGTTTCGATTTTTTTGAATTTTAGGTCAATTTTCCAAAAAAAATTTCGAAAAAATTCAAATTTTGAGATTTTCGCCTCAATTTCAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAAATTCCCACTCTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>CGCAATTTTACAGCAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCAAATTCCCACTCTTTTCTCACTGAAAACGATGCTCCGAAATCCCGCTTGCGCGCGTTGTTTAATCCACAAGAGCCGCCCATGTCATTTTTCAGCGGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCG</canonical_amplicon>
		<polymorphic_amplicon>TTCAAATTCCCACTCTTTTCTCACTGAAAACGATGCTCCGAAATCCCGCTYGCGCGCGTTGTTTAATCCACAAGAGCCGCCCATGTCATTTTTCAGCGGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15728</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>783083</contig_pos>
        <strand>+</strand>
        <context>TTTTTCGACT[A/G]AAAATTGGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCAGCGGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACT</left_flank>
        <right_flank>AAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCGACTTTTTCACCTGAATCTGCCCCGAAAACTCCAGAATCACTCCAGAATTCGTCGACTTGATGACCTTGAAAAATACGTCTAAAACAGCTTCACACTCGATTTCTGACTGCGAAAAGTGCTTCATGAGCTCGCCGAAAACCCGGACTCGCTCCTTTTTCTCCATTCCAACAAATAGTTGCTTCCACATGGCGACGCCCATTTGACGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACAGATTGTAGAAAAATCAACATCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTCTTTTCTCACTGAAAACGATGCTCCGAAATCCCGCTTGCGCGCGTTGTTTAATCCACAAGAGCCGCCCATGTCATTTTTCAGCGGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTCGCCCGTCTCATTTTTGAGTGGTTTTTGGGTCAAAATAAGGGTTATAAAATGGTTTTTCGACTGAAAAGTGAAAGAAAATGCAAGAAAATCAATTTTTTGGACAATTTTTGACAGTGAAGTTTCGATTTTTTTGAATTTTAGGTCAATTTTCCAAAAAAAATTTCGAAAAAATTCAAATTTTGAGATTTTCGCCTCAATTTCAAAGATCCGTACCTTAAACGAGATTCCCAGATCCACAATTTTCAAGAATTTCGGCGAAAACGCTAGCGGAATATTCAGAATTTTCGAATTAACA</canonical>
            <polymorphic>TATCGACTTTTTCACCTGAATCTGCCCCGAAAACTCCAGAATCACTCCAGAATTCGTCGACTTGATGACCTTGAAAAATACGTCTAAAACAGCTTCACACTCGATTTCTGACTGCGAAAAGTGCTTCATGAGCTCGCCGAAAACCCGGACTCGCTCCTTTTTCTCCATTCCAACAAATAGTTGCTTCCACATGGCGACGCCCATTTGACGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACAGATTGTAGAAAAATCAACATCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTCTTTTCTCACTGAAAACGATGCTCCGAAATCCCGCTTGCGCGCGTTGTTTAATCCACAAGAGCCGCCCATGTCATTTTTCAGCGGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTRAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTCGCCCGTCTCATTTTTGAGTGGTTTTTGGGTCAAAATAAGGGTTATAAAATGGTTTTTCGACTGAAAAGTGAAAGAAAATGCAAGAAAATCAATTTTTTGGACAATTTTTGACAGTGAAGTTTCGATTTTTTTGAATTTTAGGTCAATTTTCCAAAAAAAATTTCGAAAAAATTCAAATTTTGAGATTTTCGCCTCAATTTCAAAGATCCGTACCTTAAACGAGATTCCCAGATCCACAATTTTCAAGAATTTCGGCGAAAACGCTAGCGGAATATTCAGAATTTTCGAATTAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCCACTCTTTTCTCACTG</pcr_primer_p1>
		<pcr_primer_p2>GAATTTCGCAATTTTACAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCCCACTCTTTTCTCACTGAAAACGATGCTCCGAAATCCCGCTTGCGCGCGTTGTTTAATCCACAAGAGCCGCCCATGTCATTTTTCAGCGGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTC</canonical_amplicon>
		<polymorphic_amplicon>ATTCCCACTCTTTTCTCACTGAAAACGATGCTCCGAAATCCCGCTTGCGCGCGTTGTTTAATCCACAAGAGCCGCCCATGTCATTTTTCAGCGGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTRAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15729</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>783098</contig_pos>
        <strand>+</strand>
        <context>TTGGATGAAA[A/G]YGCAAGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAA</left_flank>
        <right_flank>TGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAATCTGCCCCGAAAACTCCAGAATCACTCCAGAATTCGTCGACTTGATGACCTTGAAAAATACGTCTAAAACAGCTTCACACTCGATTTCTGACTGCGAAAAGTGCTTCATGAGCTCGCCGAAAACCCGGACTCGCTCCTTTTTCTCCATTCCAACAAATAGTTGCTTCCACATGGCGACGCCCATTTGACGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACAGATTGTAGAAAAATCAACATCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTCTTTTCTCACTGAAAACGATGCTCCGAAATCCCGCTTGCGCGCGTTGTTTAATCCACAAGAGCCGCCCATGTCATTTTTCAGCGGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTCGCCCGTCTCATTTTTGAGTGGTTTTTGGGTCAAAATAAGGGTTATAAAATGGTTTTTCGACTGAAAAGTGAAAGAAAATGCAAGAAAATCAATTTTTTGGACAATTTTTGACAGTGAAGTTTCGATTTTTTTGAATTTTAGGTCAATTTTCCAAAAAAAATTTCGAAAAAATTCAAATTTTGAGATTTTCGCCTCAATTTCAAAGATCCGTACCTTAAACGAGATTCCCAGATCCACAATTTTCAAGAATTTCGGCGAAAACGCTAGCGGAATATTCAGAATTTTCGAATTAACAGCGGTGACGAATCCA</canonical>
            <polymorphic>CTGAATCTGCCCCGAAAACTCCAGAATCACTCCAGAATTCGTCGACTTGATGACCTTGAAAAATACGTCTAAAACAGCTTCACACTCGATTTCTGACTGCGAAAAGTGCTTCATGAGCTCGCCGAAAACCCGGACTCGCTCCTTTTTCTCCATTCCAACAAATAGTTGCTTCCACATGGCGACGCCCATTTGACGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACAGATTGTAGAAAAATCAACATCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTCTTTTCTCACTGAAAACGATGCTCCGAAATCCCGCTTGCGCGCGTTGTTTAATCCACAAGAGCCGCCCATGTCATTTTTCAGCGGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAARTGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTCGCCCGTCTCATTTTTGAGTGGTTTTTGGGTCAAAATAAGGGTTATAAAATGGTTTTTCGACTGAAAAGTGAAAGAAAATGCAAGAAAATCAATTTTTTGGACAATTTTTGACAGTGAAGTTTCGATTTTTTTGAATTTTAGGTCAATTTTCCAAAAAAAATTTCGAAAAAATTCAAATTTTGAGATTTTCGCCTCAATTTCAAAGATCCGTACCTTAAACGAGATTCCCAGATCCACAATTTTCAAGAATTTCGGCGAAAACGCTAGCGGAATATTCAGAATTTTCGAATTAACAGCGGTGACGAATCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTTTAGGTTAAAATGAAGGT</pcr_primer_p1>
		<pcr_primer_p2>GACTCTTTTTGAGCGTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTC</canonical_amplicon>
		<polymorphic_amplicon>GGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAARTGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15730</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>783099</contig_pos>
        <strand>+</strand>
        <context>TGGATGAAAR[C/T]GCAAGAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAA</left_flank>
        <right_flank>GCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAATCTGCCCCGAAAACTCCAGAATCACTCCAGAATTCGTCGACTTGATGACCTTGAAAAATACGTCTAAAACAGCTTCACACTCGATTTCTGACTGCGAAAAGTGCTTCATGAGCTCGCCGAAAACCCGGACTCGCTCCTTTTTCTCCATTCCAACAAATAGTTGCTTCCACATGGCGACGCCCATTTGACGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACAGATTGTAGAAAAATCAACATCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTCTTTTCTCACTGAAAACGATGCTCCGAAATCCCGCTTGCGCGCGTTGTTTAATCCACAAGAGCCGCCCATGTCATTTTTCAGCGGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTCGCCCGTCTCATTTTTGAGTGGTTTTTGGGTCAAAATAAGGGTTATAAAATGGTTTTTCGACTGAAAAGTGAAAGAAAATGCAAGAAAATCAATTTTTTGGACAATTTTTGACAGTGAAGTTTCGATTTTTTTGAATTTTAGGTCAATTTTCCAAAAAAAATTTCGAAAAAATTCAAATTTTGAGATTTTCGCCTCAATTTCAAAGATCCGTACCTTAAACGAGATTCCCAGATCCACAATTTTCAAGAATTTCGGCGAAAACGCTAGCGGAATATTCAGAATTTTCGAATTAACAGCGGTGACGAATCCAG</canonical>
            <polymorphic>TGAATCTGCCCCGAAAACTCCAGAATCACTCCAGAATTCGTCGACTTGATGACCTTGAAAAATACGTCTAAAACAGCTTCACACTCGATTTCTGACTGCGAAAAGTGCTTCATGAGCTCGCCGAAAACCCGGACTCGCTCCTTTTTCTCCATTCCAACAAATAGTTGCTTCCACATGGCGACGCCCATTTGACGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACAGATTGTAGAAAAATCAACATCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTCTTTTCTCACTGAAAACGATGCTCCGAAATCCCGCTTGCGCGCGTTGTTTAATCCACAAGAGCCGCCCATGTCATTTTTCAGCGGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAAYGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTCGCCCGTCTCATTTTTGAGTGGTTTTTGGGTCAAAATAAGGGTTATAAAATGGTTTTTCGACTGAAAAGTGAAAGAAAATGCAAGAAAATCAATTTTTTGGACAATTTTTGACAGTGAAGTTTCGATTTTTTTGAATTTTAGGTCAATTTTCCAAAAAAAATTTCGAAAAAATTCAAATTTTGAGATTTTCGCCTCAATTTCAAAGATCCGTACCTTAAACGAGATTCCCAGATCCACAATTTTCAAGAATTTCGGCGAAAACGCTAGCGGAATATTCAGAATTTTCGAATTAACAGCGGTGACGAATCCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>501 268 231</canonical_bands>
                <polymorphic_bands>769 231</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTTTAGGTTAAAATGAAGGT</pcr_primer_p1>
		<pcr_primer_p2>GACTCTTTTTGAGCGTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTC</canonical_amplicon>
		<polymorphic_amplicon>GGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAAYGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15731</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>783120</contig_pos>
        <strand>+</strand>
        <context>CGAATATTTC[G/T]CGAAAATTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTC</left_flank>
        <right_flank>CGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAATCACTCCAGAATTCGTCGACTTGATGACCTTGAAAAATACGTCTAAAACAGCTTCACACTCGATTTCTGACTGCGAAAAGTGCTTCATGAGCTCGCCGAAAACCCGGACTCGCTCCTTTTTCTCCATTCCAACAAATAGTTGCTTCCACATGGCGACGCCCATTTGACGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACAGATTGTAGAAAAATCAACATCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTCTTTTCTCACTGAAAACGATGCTCCGAAATCCCGCTTGCGCGCGTTGTTTAATCCACAAGAGCCGCCCATGTCATTTTTCAGCGGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTCGCCCGTCTCATTTTTGAGTGGTTTTTGGGTCAAAATAAGGGTTATAAAATGGTTTTTCGACTGAAAAGTGAAAGAAAATGCAAGAAAATCAATTTTTTGGACAATTTTTGACAGTGAAGTTTCGATTTTTTTGAATTTTAGGTCAATTTTCCAAAAAAAATTTCGAAAAAATTCAAATTTTGAGATTTTCGCCTCAATTTCAAAGATCCGTACCTTAAACGAGATTCCCAGATCCACAATTTTCAAGAATTTCGGCGAAAACGCTAGCGGAATATTCAGAATTTTCGAATTAACAGCGGTGACGAATCCAGGAGGGCATGATTCTGGATTTG</canonical>
            <polymorphic>AGAATCACTCCAGAATTCGTCGACTTGATGACCTTGAAAAATACGTCTAAAACAGCTTCACACTCGATTTCTGACTGCGAAAAGTGCTTCATGAGCTCGCCGAAAACCCGGACTCGCTCCTTTTTCTCCATTCCAACAAATAGTTGCTTCCACATGGCGACGCCCATTTGACGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACAGATTGTAGAAAAATCAACATCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTCTTTTCTCACTGAAAACGATGCTCCGAAATCCCGCTTGCGCGCGTTGTTTAATCCACAAGAGCCGCCCATGTCATTTTTCAGCGGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCKCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTCGCCCGTCTCATTTTTGAGTGGTTTTTGGGTCAAAATAAGGGTTATAAAATGGTTTTTCGACTGAAAAGTGAAAGAAAATGCAAGAAAATCAATTTTTTGGACAATTTTTGACAGTGAAGTTTCGATTTTTTTGAATTTTAGGTCAATTTTCCAAAAAAAATTTCGAAAAAATTCAAATTTTGAGATTTTCGCCTCAATTTCAAAGATCCGTACCTTAAACGAGATTCCCAGATCCACAATTTTCAAGAATTTCGGCGAAAACGCTAGCGGAATATTCAGAATTTTCGAATTAACAGCGGTGACGAATCCAGGAGGGCATGATTCTGGATTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>362 206 170 138 122 2</canonical_bands>
                <polymorphic_bands>362 260 206 170 2</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGCGA</site>
                <isoschizomers>
                    <enzyme>Bsp68I</enzyme>
                    <enzyme>NruI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTTTAGGTTAAAATGAAGGT</pcr_primer_p1>
		<pcr_primer_p2>GACTCTTTTTGAGCGTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTC</canonical_amplicon>
		<polymorphic_amplicon>GGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCKCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15732</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>783163</contig_pos>
        <strand>+</strand>
        <context>TTTCCTAGGC[C/G]AAATTCCCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGC</left_flank>
        <right_flank>AAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTCTAAAACAGCTTCACACTCGATTTCTGACTGCGAAAAGTGCTTCATGAGCTCGCCGAAAACCCGGACTCGCTCCTTTTTCTCCATTCCAACAAATAGTTGCTTCCACATGGCGACGCCCATTTGACGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACAGATTGTAGAAAAATCAACATCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTCTTTTCTCACTGAAAACGATGCTCCGAAATCCCGCTTGCGCGCGTTGTTTAATCCACAAGAGCCGCCCATGTCATTTTTCAGCGGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTCGCCCGTCTCATTTTTGAGTGGTTTTTGGGTCAAAATAAGGGTTATAAAATGGTTTTTCGACTGAAAAGTGAAAGAAAATGCAAGAAAATCAATTTTTTGGACAATTTTTGACAGTGAAGTTTCGATTTTTTTGAATTTTAGGTCAATTTTCCAAAAAAAATTTCGAAAAAATTCAAATTTTGAGATTTTCGCCTCAATTTCAAAGATCCGTACCTTAAACGAGATTCCCAGATCCACAATTTTCAAGAATTTCGGCGAAAACGCTAGCGGAATATTCAGAATTTTCGAATTAACAGCGGTGACGAATCCAGGAGGGCATGATTCTGGATTTGAGAGTAAAGAGAAGATAAGAAATGCTTCAAATGAAGAGAGATA</canonical>
            <polymorphic>CGTCTAAAACAGCTTCACACTCGATTTCTGACTGCGAAAAGTGCTTCATGAGCTCGCCGAAAACCCGGACTCGCTCCTTTTTCTCCATTCCAACAAATAGTTGCTTCCACATGGCGACGCCCATTTGACGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACAGATTGTAGAAAAATCAACATCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTCTTTTCTCACTGAAAACGATGCTCCGAAATCCCGCTTGCGCGCGTTGTTTAATCCACAAGAGCCGCCCATGTCATTTTTCAGCGGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCSAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTCGCCCGTCTCATTTTTGAGTGGTTTTTGGGTCAAAATAAGGGTTATAAAATGGTTTTTCGACTGAAAAGTGAAAGAAAATGCAAGAAAATCAATTTTTTGGACAATTTTTGACAGTGAAGTTTCGATTTTTTTGAATTTTAGGTCAATTTTCCAAAAAAAATTTCGAAAAAATTCAAATTTTGAGATTTTCGCCTCAATTTCAAAGATCCGTACCTTAAACGAGATTCCCAGATCCACAATTTTCAAGAATTTCGGCGAAAACGCTAGCGGAATATTCAGAATTTTCGAATTAACAGCGGTGACGAATCCAGGAGGGCATGATTCTGGATTTGAGAGTAAAGAGAAGATAAGAAATGCTTCAAATGAAGAGAGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>502 303 143 40 12</canonical_bands>
                <polymorphic_bands>645 303 40 12</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTTTAGGTTAAAATGAAGGT</pcr_primer_p1>
		<pcr_primer_p2>GACTCTTTTTGAGCGTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTC</canonical_amplicon>
		<polymorphic_amplicon>GGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCSAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15733</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>784583</contig_pos>
        <strand>+</strand>
        <context>GATTTTTAGG[G/T]CAATTTTCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAAAATGGATTTTCCGCTAATTTTGTGCAATGAAATCCCGATTTTTAGG</left_flank>
        <right_flank>CAATTTTCAAAGTAAACTTTTCAAGAAAAACTCATGATTTTAGTCAATTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGCTGGAAGACAAAAAACGTCCAAATCCATGCACAAATTGCACAAATCCCTTCGAATTTGCCGCGAAACGAGAGAATCCATGCGTAGGAGACGCAGAGTTTCAACGATTTGAAGTTGGAACGATGCCAAATCGGGAACATTTTGAGTCTCTTGAATTTGCTGATTCAATCGGATCGCCGTGAATTGTTGAAGGCTGATTTCGGTGAAAATCTGGAAAAATAGTAAAAAAATCTATGTAAAAGCTCTTCTTGAGCCTTAAATTATGAAAATCAATTTTTAAATTTCAAATTCCCACACTTTTTTCTGACAACGATGCTCCGAAATCCCGCTAGTACGCGTTGTTTAGCGTAAATCCATAAAAGCCGCCCATATCATTTCTGGGCGGTTTTCAGGTCAAAATGGAAGTTTTAGAATGGTTTTGTGAGGGAAAAATGAATAAAAATGCAAGAAAAATGGATTTTCCGCTAATTTTGTGCAATGAAATCCCGATTTTTAGGGCAATTTTCAAAGTAAACTTTTCAAGAAAAACTCATGATTTTAGTCAATTTTCAGAGAAAATATATATAAAAGATGAGGTTCCCGACAATTGTTTGTGGAGGAAACCACAAAAATGGCAGTAAATTGCGAATTTCATTTTTGAAAATTCAAATTCGCACTCTTTTTCCTCCGACAACGATGCTCCGAAATCCCGCTTATGCGCGTTGTTTAGCGTAAATCGACAAGGAAGTTAAAGAGCCGCCAATGTCATTTTTGGACGATTTTCAGATCAAAATAAAGGGTTTTCAGGAGTTTTTTGAAAGGAAAATTATGAAAAATTCTAGAAAATCGAGTTTTTGTCAATTTTATGAAGCAAAAGCTCGAATCTTTGAAGATTTTTAGGTCAATTTTTTTCCAGCAAATTCCAGGCTTTCATAGTCAATTTTAGGTCAAAATAAGCCGAAACAAGGTGAAAAATGCATTTTTCCCGTCTGTTTGTCCAGATGTCCACCTTATTACCT</canonical>
            <polymorphic>ACTGCTGGAAGACAAAAAACGTCCAAATCCATGCACAAATTGCACAAATCCCTTCGAATTTGCCGCGAAACGAGAGAATCCATGCGTAGGAGACGCAGAGTTTCAACGATTTGAAGTTGGAACGATGCCAAATCGGGAACATTTTGAGTCTCTTGAATTTGCTGATTCAATCGGATCGCCGTGAATTGTTGAAGGCTGATTTCGGTGAAAATCTGGAAAAATAGTAAAAAAATCTATGTAAAAGCTCTTCTTGAGCCTTAAATTATGAAAATCAATTTTTAAATTTCAAATTCCCACACTTTTTTCTGACAACGATGCTCCGAAATCCCGCTAGTACGCGTTGTTTAGCGTAAATCCATAAAAGCCGCCCATATCATTTCTGGGCGGTTTTCAGGTCAAAATGGAAGTTTTAGAATGGTTTTGTGAGGGAAAAATGAATAAAAATGCAAGAAAAATGGATTTTCCGCTAATTTTGTGCAATGAAATCCCGATTTTTAGGKCAATTTTCAAAGTAAACTTTTCAAGAAAAACTCATGATTTTAGTCAATTTTCAGAGAAAATATATATAAAAGATGAGGTTCCCGACAATTGTTTGTGGAGGAAACCACAAAAATGGCAGTAAATTGCGAATTTCATTTTTGAAAATTCAAATTCGCACTCTTTTTCCTCCGACAACGATGCTCCGAAATCCCGCTTATGCGCGTTGTTTAGCGTAAATCGACAAGGAAGTTAAAGAGCCGCCAATGTCATTTTTGGACGATTTTCAGATCAAAATAAAGGGTTTTCAGGAGTTTTTTGAAAGGAAAATTATGAAAAATTCTAGAAAATCGAGTTTTTGTCAATTTTATGAAGCAAAAGCTCGAATCTTTGAAGATTTTTAGGTCAATTTTTTTCCAGCAAATTCCAGGCTTTCATAGTCAATTTTAGGTCAAAATAAGCCGAAACAAGGTGAAAAATGCATTTTTCCCGTCTGTTTGTCCAGATGTCCACCTTATTACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAATGAATAAAAATGCAAGA</pcr_primer_p1>
		<pcr_primer_p2>GTTGTCGGAGGAAAAAGAGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAAAATGAATAAAAATGCAAGAAAAATGGATTTTCCGCTAATTTTGTGCAATGAAATCCCGATTTTTAGGGCAATTTTCAAAGTAAACTTTTCAAGAAAAACTCATGATTTTAGTCAATTTTCAGAGAAAATATATATAAAAGATGAGGTTCCCGACAATTGTTTGTGGAGGAAACCACAAAAATGGCAGTAAATTGCGAATTTCATTTTTGAAAATTCAAATTCGCACTCTTTTTCCTCCGACAAC</canonical_amplicon>
		<polymorphic_amplicon>GAAAAATGAATAAAAATGCAAGAAAAATGGATTTTCCGCTAATTTTGTGCAATGAAATCCCGATTTTTAGGKCAATTTTCAAAGTAAACTTTTCAAGAAAAACTCATGATTTTAGTCAATTTTCAGAGAAAATATATATAAAAGATGAGGTTCCCGACAATTGTTTGTGGAGGAAACCACAAAAATGGCAGTAAATTGCGAATTTCATTTTTGAAAATTCAAATTCGCACTCTTTTTCCTCCGACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15734</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>784470</contig_pos>
        <strand>+</strand>
        <context>TTTCTGGGCG[G/T]TTTTCAGGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGCGTTGTTTAGCGTAAATCCATAAAAGCCGCCCATATCATTTCTGGGCG</left_flank>
        <right_flank>TTTTCAGGTCAAAATGGAAGTTTTAGAATGGTTTTGTGAGGGAAAAATGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGTCAGACTGAAAAATTTTAAATTTTTTGAAAATTCTCAATGGAGCGCGCTTTCTCCTCCACTTACTTTCCCAGTGGGCTGTGCCAACAAGCTTCCCAACGAGAACGCAATCACTGCTGGAAGACAAAAAACGTCCAAATCCATGCACAAATTGCACAAATCCCTTCGAATTTGCCGCGAAACGAGAGAATCCATGCGTAGGAGACGCAGAGTTTCAACGATTTGAAGTTGGAACGATGCCAAATCGGGAACATTTTGAGTCTCTTGAATTTGCTGATTCAATCGGATCGCCGTGAATTGTTGAAGGCTGATTTCGGTGAAAATCTGGAAAAATAGTAAAAAAATCTATGTAAAAGCTCTTCTTGAGCCTTAAATTATGAAAATCAATTTTTAAATTTCAAATTCCCACACTTTTTTCTGACAACGATGCTCCGAAATCCCGCTAGTACGCGTTGTTTAGCGTAAATCCATAAAAGCCGCCCATATCATTTCTGGGCGGTTTTCAGGTCAAAATGGAAGTTTTAGAATGGTTTTGTGAGGGAAAAATGAATAAAAATGCAAGAAAAATGGATTTTCCGCTAATTTTGTGCAATGAAATCCCGATTTTTAGGGCAATTTTCAAAGTAAACTTTTCAAGAAAAACTCATGATTTTAGTCAATTTTCAGAGAAAATATATATAAAAGATGAGGTTCCCGACAATTGTTTGTGGAGGAAACCACAAAAATGGCAGTAAATTGCGAATTTCATTTTTGAAAATTCAAATTCGCACTCTTTTTCCTCCGACAACGATGCTCCGAAATCCCGCTTATGCGCGTTGTTTAGCGTAAATCGACAAGGAAGTTAAAGAGCCGCCAATGTCATTTTTGGACGATTTTCAGATCAAAATAAAGGGTTTTCAGGAGTTTTTTGAAAGGAAAATTATGAAAAATTCTAGAAAATCGAGTTTTTGTCAATTTTATGAAGCAAAAGCTCGAATCTTTGAAGATTTTTAGGTCAAT</canonical>
            <polymorphic>TCGTCAGACTGAAAAATTTTAAATTTTTTGAAAATTCTCAATGGAGCGCGCTTTCTCCTCCACTTACTTTCCCAGTGGGCTGTGCCAACAAGCTTCCCAACGAGAACGCAATCACTGCTGGAAGACAAAAAACGTCCAAATCCATGCACAAATTGCACAAATCCCTTCGAATTTGCCGCGAAACGAGAGAATCCATGCGTAGGAGACGCAGAGTTTCAACGATTTGAAGTTGGAACGATGCCAAATCGGGAACATTTTGAGTCTCTTGAATTTGCTGATTCAATCGGATCGCCGTGAATTGTTGAAGGCTGATTTCGGTGAAAATCTGGAAAAATAGTAAAAAAATCTATGTAAAAGCTCTTCTTGAGCCTTAAATTATGAAAATCAATTTTTAAATTTCAAATTCCCACACTTTTTTCTGACAACGATGCTCCGAAATCCCGCTAGTACGCGTTGTTTAGCGTAAATCCATAAAAGCCGCCCATATCATTTCTGGGCGKTTTTCAGGTCAAAATGGAAGTTTTAGAATGGTTTTGTGAGGGAAAAATGAATAAAAATGCAAGAAAAATGGATTTTCCGCTAATTTTGTGCAATGAAATCCCGATTTTTAGGGCAATTTTCAAAGTAAACTTTTCAAGAAAAACTCATGATTTTAGTCAATTTTCAGAGAAAATATATATAAAAGATGAGGTTCCCGACAATTGTTTGTGGAGGAAACCACAAAAATGGCAGTAAATTGCGAATTTCATTTTTGAAAATTCAAATTCGCACTCTTTTTCCTCCGACAACGATGCTCCGAAATCCCGCTTATGCGCGTTGTTTAGCGTAAATCGACAAGGAAGTTAAAGAGCCGCCAATGTCATTTTTGGACGATTTTCAGATCAAAATAAAGGGTTTTCAGGAGTTTTTTGAAAGGAAAATTATGAAAAATTCTAGAAAATCGAGTTTTTGTCAATTTTATGAAGCAAAAGCTCGAATCTTTGAAGATTTTTAGGTCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>265 227 176 149 81 47 37 18</canonical_bands>
                <polymorphic_bands>265 227 176 149 99 47 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTCTTCTTGAGCCTTAAATTAT</pcr_primer_p1>
		<pcr_primer_p2>GGATTTCATTGCACAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GCTCTTCTTGAGCCTTAAATTATGAAAATCAATTTTTAAATTTCAAATTCCCACACTTTTTTCTGACAACGATGCTCCGAAATCCCGCTAGTACGCGTTGTTTAGCGTAAATCCATAAAAGCCGCCCATATCATTTCTGGGCGGTTTTCAGGTCAAAATGGAAGTTTTAGAATGGTTTTGTGAGGGAAAAATGAATAAAAATGCAAGAAAAATGGATTTTCCGCTAATTTTGTGCAATGAAATCC</canonical_amplicon>
		<polymorphic_amplicon>GCTCTTCTTGAGCCTTAAATTATGAAAATCAATTTTTAAATTTCAAATTCCCACACTTTTTTCTGACAACGATGCTCCGAAATCCCGCTAGTACGCGTTGTTTAGCGTAAATCCATAAAAGCCGCCCATATCATTTCTGGGCGKTTTTCAGGTCAAAATGGAAGTTTTAGAATGGTTTTGTGAGGGAAAAATGAATAAAAATGCAAGAAAAATGGATTTTCCGCTAATTTTGTGCAATGAAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15735</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>784442</contig_pos>
        <strand>+</strand>
        <context>CGTAAATCCA[C/T]AAAAGCCGCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAACGATGCTCCGAAATCCCGCTAGTACGCGTTGTTTAGCGTAAATCCA</left_flank>
        <right_flank>AAAAGCCGCCCATATCATTTCTGGGCGGTTTTCAGGTCAAAATGGAAGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCATCTCATGGAAAAGGGTCTCATCGTCGTCAGACTGAAAAATTTTAAATTTTTTGAAAATTCTCAATGGAGCGCGCTTTCTCCTCCACTTACTTTCCCAGTGGGCTGTGCCAACAAGCTTCCCAACGAGAACGCAATCACTGCTGGAAGACAAAAAACGTCCAAATCCATGCACAAATTGCACAAATCCCTTCGAATTTGCCGCGAAACGAGAGAATCCATGCGTAGGAGACGCAGAGTTTCAACGATTTGAAGTTGGAACGATGCCAAATCGGGAACATTTTGAGTCTCTTGAATTTGCTGATTCAATCGGATCGCCGTGAATTGTTGAAGGCTGATTTCGGTGAAAATCTGGAAAAATAGTAAAAAAATCTATGTAAAAGCTCTTCTTGAGCCTTAAATTATGAAAATCAATTTTTAAATTTCAAATTCCCACACTTTTTTCTGACAACGATGCTCCGAAATCCCGCTAGTACGCGTTGTTTAGCGTAAATCCATAAAAGCCGCCCATATCATTTCTGGGCGGTTTTCAGGTCAAAATGGAAGTTTTAGAATGGTTTTGTGAGGGAAAAATGAATAAAAATGCAAGAAAAATGGATTTTCCGCTAATTTTGTGCAATGAAATCCCGATTTTTAGGGCAATTTTCAAAGTAAACTTTTCAAGAAAAACTCATGATTTTAGTCAATTTTCAGAGAAAATATATATAAAAGATGAGGTTCCCGACAATTGTTTGTGGAGGAAACCACAAAAATGGCAGTAAATTGCGAATTTCATTTTTGAAAATTCAAATTCGCACTCTTTTTCCTCCGACAACGATGCTCCGAAATCCCGCTTATGCGCGTTGTTTAGCGTAAATCGACAAGGAAGTTAAAGAGCCGCCAATGTCATTTTTGGACGATTTTCAGATCAAAATAAAGGGTTTTCAGGAGTTTTTTGAAAGGAAAATTATGAAAAATTCTAGAAAATCGAGTTTTTGTCAATTTTATGAAGCAAAAGC</canonical>
            <polymorphic>GAGCATCTCATGGAAAAGGGTCTCATCGTCGTCAGACTGAAAAATTTTAAATTTTTTGAAAATTCTCAATGGAGCGCGCTTTCTCCTCCACTTACTTTCCCAGTGGGCTGTGCCAACAAGCTTCCCAACGAGAACGCAATCACTGCTGGAAGACAAAAAACGTCCAAATCCATGCACAAATTGCACAAATCCCTTCGAATTTGCCGCGAAACGAGAGAATCCATGCGTAGGAGACGCAGAGTTTCAACGATTTGAAGTTGGAACGATGCCAAATCGGGAACATTTTGAGTCTCTTGAATTTGCTGATTCAATCGGATCGCCGTGAATTGTTGAAGGCTGATTTCGGTGAAAATCTGGAAAAATAGTAAAAAAATCTATGTAAAAGCTCTTCTTGAGCCTTAAATTATGAAAATCAATTTTTAAATTTCAAATTCCCACACTTTTTTCTGACAACGATGCTCCGAAATCCCGCTAGTACGCGTTGTTTAGCGTAAATCCAYAAAAGCCGCCCATATCATTTCTGGGCGGTTTTCAGGTCAAAATGGAAGTTTTAGAATGGTTTTGTGAGGGAAAAATGAATAAAAATGCAAGAAAAATGGATTTTCCGCTAATTTTGTGCAATGAAATCCCGATTTTTAGGGCAATTTTCAAAGTAAACTTTTCAAGAAAAACTCATGATTTTAGTCAATTTTCAGAGAAAATATATATAAAAGATGAGGTTCCCGACAATTGTTTGTGGAGGAAACCACAAAAATGGCAGTAAATTGCGAATTTCATTTTTGAAAATTCAAATTCGCACTCTTTTTCCTCCGACAACGATGCTCCGAAATCCCGCTTATGCGCGTTGTTTAGCGTAAATCGACAAGGAAGTTAAAGAGCCGCCAATGTCATTTTTGGACGATTTTCAGATCAAAATAAAGGGTTTTCAGGAGTTTTTTGAAAGGAAAATTATGAAAAATTCTAGAAAATCGAGTTTTTGTCAATTTTATGAAGCAAAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCTTCTTGAGCCTTAAATTAT</pcr_primer_p1>
		<pcr_primer_p2>GGATTTCATTGCACAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GCTCTTCTTGAGCCTTAAATTATGAAAATCAATTTTTAAATTTCAAATTCCCACACTTTTTTCTGACAACGATGCTCCGAAATCCCGCTAGTACGCGTTGTTTAGCGTAAATCCATAAAAGCCGCCCATATCATTTCTGGGCGGTTTTCAGGTCAAAATGGAAGTTTTAGAATGGTTTTGTGAGGGAAAAATGAATAAAAATGCAAGAAAAATGGATTTTCCGCTAATTTTGTGCAATGAAATCC</canonical_amplicon>
		<polymorphic_amplicon>GCTCTTCTTGAGCCTTAAATTATGAAAATCAATTTTTAAATTTCAAATTCCCACACTTTTTTCTGACAACGATGCTCCGAAATCCCGCTAGTACGCGTTGTTTAGCGTAAATCCAYAAAAGCCGCCCATATCATTTCTGGGCGGTTTTCAGGTCAAAATGGAAGTTTTAGAATGGTTTTGTGAGGGAAAAATGAATAAAAATGCAAGAAAAATGGATTTTCCGCTAATTTTGTGCAATGAAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15747</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>784421</contig_pos>
        <strand>+</strand>
        <context>CCGCTAGTRC[A/G]CGTTGTTTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTCCCACACTTTTTTCTGACAACGATGCTCCGAAATCCCGCTAGTAC</left_flank>
        <right_flank>CGTTGTTTAGCGTAAATCCATAAAAGCCGCCCATATCATTTCTGGGCGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAAGACGTGATAGCTGGCGGAGCATCTCATGGAAAAGGGTCTCATCGTCGTCAGACTGAAAAATTTTAAATTTTTTGAAAATTCTCAATGGAGCGCGCTTTCTCCTCCACTTACTTTCCCAGTGGGCTGTGCCAACAAGCTTCCCAACGAGAACGCAATCACTGCTGGAAGACAAAAAACGTCCAAATCCATGCACAAATTGCACAAATCCCTTCGAATTTGCCGCGAAACGAGAGAATCCATGCGTAGGAGACGCAGAGTTTCAACGATTTGAAGTTGGAACGATGCCAAATCGGGAACATTTTGAGTCTCTTGAATTTGCTGATTCAATCGGATCGCCGTGAATTGTTGAAGGCTGATTTCGGTGAAAATCTGGAAAAATAGTAAAAAAATCTATGTAAAAGCTCTTCTTGAGCCTTAAATTATGAAAATCAATTTTTAAATTTCAAATTCCCACACTTTTTTCTGACAACGATGCTCCGAAATCCCGCTAGTACGCGTTGTTTAGCGTAAATCCATAAAAGCCGCCCATATCATTTCTGGGCGGTTTTCAGGTCAAAATGGAAGTTTTAGAATGGTTTTGTGAGGGAAAAATGAATAAAAATGCAAGAAAAATGGATTTTCCGCTAATTTTGTGCAATGAAATCCCGATTTTTAGGGCAATTTTCAAAGTAAACTTTTCAAGAAAAACTCATGATTTTAGTCAATTTTCAGAGAAAATATATATAAAAGATGAGGTTCCCGACAATTGTTTGTGGAGGAAACCACAAAAATGGCAGTAAATTGCGAATTTCATTTTTGAAAATTCAAATTCGCACTCTTTTTCCTCCGACAACGATGCTCCGAAATCCCGCTTATGCGCGTTGTTTAGCGTAAATCGACAAGGAAGTTAAAGAGCCGCCAATGTCATTTTTGGACGATTTTCAGATCAAAATAAAGGGTTTTCAGGAGTTTTTTGAAAGGAAAATTATGAAAAATTCTAGAAAATCGAGTTTTTG</canonical>
            <polymorphic>CAGAAGACGTGATAGCTGGCGGAGCATCTCATGGAAAAGGGTCTCATCGTCGTCAGACTGAAAAATTTTAAATTTTTTGAAAATTCTCAATGGAGCGCGCTTTCTCCTCCACTTACTTTCCCAGTGGGCTGTGCCAACAAGCTTCCCAACGAGAACGCAATCACTGCTGGAAGACAAAAAACGTCCAAATCCATGCACAAATTGCACAAATCCCTTCGAATTTGCCGCGAAACGAGAGAATCCATGCGTAGGAGACGCAGAGTTTCAACGATTTGAAGTTGGAACGATGCCAAATCGGGAACATTTTGAGTCTCTTGAATTTGCTGATTCAATCGGATCGCCGTGAATTGTTGAAGGCTGATTTCGGTGAAAATCTGGAAAAATAGTAAAAAAATCTATGTAAAAGCTCTTCTTGAGCCTTAAATTATGAAAATCAATTTTTAAATTTCAAATTCCCACACTTTTTTCTGACAACGATGCTCCGAAATCCCGCTAGTACRCGTTGTTTAGCGTAAATCCATAAAAGCCGCCCATATCATTTCTGGGCGGTTTTCAGGTCAAAATGGAAGTTTTAGAATGGTTTTGTGAGGGAAAAATGAATAAAAATGCAAGAAAAATGGATTTTCCGCTAATTTTGTGCAATGAAATCCCGATTTTTAGGGCAATTTTCAAAGTAAACTTTTCAAGAAAAACTCATGATTTTAGTCAATTTTCAGAGAAAATATATATAAAAGATGAGGTTCCCGACAATTGTTTGTGGAGGAAACCACAAAAATGGCAGTAAATTGCGAATTTCATTTTTGAAAATTCAAATTCGCACTCTTTTTCCTCCGACAACGATGCTCCGAAATCCCGCTTATGCGCGTTGTTTAGCGTAAATCGACAAGGAAGTTAAAGAGCCGCCAATGTCATTTTTGGACGATTTTCAGATCAAAATAAAGGGTTTTCAGGAGTTTTTTGAAAGGAAAATTATGAAAAATTCTAGAAAATCGAGTTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>363 273 137 130 97</canonical_bands>
                <polymorphic_bands>636 137 130 97</polymorphic_bands>
            </assay>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGCGT</site>
                <isoschizomers>
                    <enzyme>MluI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTCTTCTTGAGCCTTAAATTAT</pcr_primer_p1>
		<pcr_primer_p2>GGATTTCATTGCACAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GCTCTTCTTGAGCCTTAAATTATGAAAATCAATTTTTAAATTTCAAATTCCCACACTTTTTTCTGACAACGATGCTCCGAAATCCCGCTAGTACGCGTTGTTTAGCGTAAATCCATAAAAGCCGCCCATATCATTTCTGGGCGGTTTTCAGGTCAAAATGGAAGTTTTAGAATGGTTTTGTGAGGGAAAAATGAATAAAAATGCAAGAAAAATGGATTTTCCGCTAATTTTGTGCAATGAAATCC</canonical_amplicon>
		<polymorphic_amplicon>GCTCTTCTTGAGCCTTAAATTATGAAAATCAATTTTTAAATTTCAAATTCCCACACTTTTTTCTGACAACGATGCTCCGAAATCCCGCTAGTACRCGTTGTTTAGCGTAAATCCATAAAAGCCGCCCATATCATTTCTGGGCGGTTTTCAGGTCAAAATGGAAGTTTTAGAATGGTTTTGTGAGGGAAAAATGAATAAAAATGCAAGAAAAATGGATTTTCCGCTAATTTTGTGCAATGAAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15749</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>784419</contig_pos>
        <strand></strand>
        <context>TCCCGCTAGT[A/G]CRCGTTGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAAATTCCCACACTTTTTTCTGACAACGATGCTCCGAAATCCCGCTAGT</left_flank>
        <right_flank>CGCGTTGTTTAGCGTAAATCCATAAAAGCCGCCCATATCATTTCTGGGCG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAGAAGACGTGATAGCTGGCGGAGCATCTCATGGAAAAGGGTCTCATCGTCGTCAGACTGAAAAATTTTAAATTTTTTGAAAATTCTCAATGGAGCGCGCTTTCTCCTCCACTTACTTTCCCAGTGGGCTGTGCCAACAAGCTTCCCAACGAGAACGCAATCACTGCTGGAAGACAAAAAACGTCCAAATCCATGCACAAATTGCACAAATCCCTTCGAATTTGCCGCGAAACGAGAGAATCCATGCGTAGGAGACGCAGAGTTTCAACGATTTGAAGTTGGAACGATGCCAAATCGGGAACATTTTGAGTCTCTTGAATTTGCTGATTCAATCGGATCGCCGTGAATTGTTGAAGGCTGATTTCGGTGAAAATCTGGAAAAATAGTAAAAAAATCTATGTAAAAGCTCTTCTTGAGCCTTAAATTATGAAAATCAATTTTTAAATTTCAAATTCCCACACTTTTTTCTGACAACGATGCTCCGAAATCCCGCTAGTACGCGTTGTTTAGCGTAAATCCATAAAAGCCGCCCATATCATTTCTGGGCGGTTTTCAGGTCAAAATGGAAGTTTTAGAATGGTTTTGTGAGGGAAAAATGAATAAAAATGCAAGAAAAATGGATTTTCCGCTAATTTTGTGCAATGAAATCCCGATTTTTAGGGCAATTTTCAAAGTAAACTTTTCAAGAAAAACTCATGATTTTAGTCAATTTTCAGAGAAAATATATATAAAAGATGAGGTTCCCGACAATTGTTTGTGGAGGAAACCACAAAAATGGCAGTAAATTGCGAATTTCATTTTTGAAAATTCAAATTCGCACTCTTTTTCCTCCGACAACGATGCTCCGAAATCCCGCTTATGCGCGTTGTTTAGCGTAAATCGACAAGGAAGTTAAAGAGCCGCCAATGTCATTTTTGGACGATTTTCAGATCAAAATAAAGGGTTTTCAGGAGTTTTTTGAAAGGAAAATTATGAAAAATTCTAGAAAATCGAGTTTT</canonical>
            <polymorphic>TTCAGAAGACGTGATAGCTGGCGGAGCATCTCATGGAAAAGGGTCTCATCGTCGTCAGACTGAAAAATTTTAAATTTTTTGAAAATTCTCAATGGAGCGCGCTTTCTCCTCCACTTACTTTCCCAGTGGGCTGTGCCAACAAGCTTCCCAACGAGAACGCAATCACTGCTGGAAGACAAAAAACGTCCAAATCCATGCACAAATTGCACAAATCCCTTCGAATTTGCCGCGAAACGAGAGAATCCATGCGTAGGAGACGCAGAGTTTCAACGATTTGAAGTTGGAACGATGCCAAATCGGGAACATTTTGAGTCTCTTGAATTTGCTGATTCAATCGGATCGCCGTGAATTGTTGAAGGCTGATTTCGGTGAAAATCTGGAAAAATAGTAAAAAAATCTATGTAAAAGCTCTTCTTGAGCCTTAAATTATGAAAATCAATTTTTAAATTTCAAATTCCCACACTTTTTTCTGACAACGATGCTCCGAAATCCCGCTAGTRCGCGTTGTTTAGCGTAAATCCATAAAAGCCGCCCATATCATTTCTGGGCGGTTTTCAGGTCAAAATGGAAGTTTTAGAATGGTTTTGTGAGGGAAAAATGAATAAAAATGCAAGAAAAATGGATTTTCCGCTAATTTTGTGCAATGAAATCCCGATTTTTAGGGCAATTTTCAAAGTAAACTTTTCAAGAAAAACTCATGATTTTAGTCAATTTTCAGAGAAAATATATATAAAAGATGAGGTTCCCGACAATTGTTTGTGGAGGAAACCACAAAAATGGCAGTAAATTGCGAATTTCATTTTTGAAAATTCAAATTCGCACTCTTTTTCCTCCGACAACGATGCTCCGAAATCCCGCTTATGCGCGTTGTTTAGCGTAAATCGACAAGGAAGTTAAAGAGCCGCCAATGTCATTTTTGGACGATTTTCAGATCAAAATAAAGGGTTTTCAGGAGTTTTTTGAAAGGAAAATTATGAAAAATTCTAGAAAATCGAGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGCGT</site>
                <isoschizomers>
                    <enzyme>MluI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTCTTCTTGAGCCTTAAATTAT</pcr_primer_p1>
		<pcr_primer_p2>GGATTTCATTGCACAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GCTCTTCTTGAGCCTTAAATTATGAAAATCAATTTTTAAATTTCAAATTCCCACACTTTTTTCTGACAACGATGCTCCGAAATCCCGCTAGTACGCGTTGTTTAGCGTAAATCCATAAAAGCCGCCCATATCATTTCTGGGCGGTTTTCAGGTCAAAATGGAAGTTTTAGAATGGTTTTGTGAGGGAAAAATGAATAAAAATGCAAGAAAAATGGATTTTCCGCTAATTTTGTGCAATGAAATCC</canonical_amplicon>
		<polymorphic_amplicon>GCTCTTCTTGAGCCTTAAATTATGAAAATCAATTTTTAAATTTCAAATTCCCACACTTTTTTCTGACAACGATGCTCCGAAATCCCGCTAGTRCGCGTTGTTTAGCGTAAATCCATAAAAGCCGCCCATATCATTTCTGGGCGGTTTTCAGGTCAAAATGGAAGTTTTAGAATGGTTTTGTGAGGGAAAAATGAATAAAAATGCAAGAAAAATGGATTTTCCGCTAATTTTGTGCAATGAAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15769</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>784399</contig_pos>
        <strand>+</strand>
        <context>CTGACAACGA[A/G]GCTCCGAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAAATCAATTTTTAAATTTCAAATTCCCACACTTTTTTCTGACAACGA</left_flank>
        <right_flank>GCTCCGAAATCCCGCTAGTACGCGTTGTTTAGCGTAAATCCATAAAAGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTTTTGACCGCGTCGATTTTCAGAAGACGTGATAGCTGGCGGAGCATCTCATGGAAAAGGGTCTCATCGTCGTCAGACTGAAAAATTTTAAATTTTTTGAAAATTCTCAATGGAGCGCGCTTTCTCCTCCACTTACTTTCCCAGTGGGCTGTGCCAACAAGCTTCCCAACGAGAACGCAATCACTGCTGGAAGACAAAAAACGTCCAAATCCATGCACAAATTGCACAAATCCCTTCGAATTTGCCGCGAAACGAGAGAATCCATGCGTAGGAGACGCAGAGTTTCAACGATTTGAAGTTGGAACGATGCCAAATCGGGAACATTTTGAGTCTCTTGAATTTGCTGATTCAATCGGATCGCCGTGAATTGTTGAAGGCTGATTTCGGTGAAAATCTGGAAAAATAGTAAAAAAATCTATGTAAAAGCTCTTCTTGAGCCTTAAATTATGAAAATCAATTTTTAAATTTCAAATTCCCACACTTTTTTCTGACAACGATGCTCCGAAATCCCGCTAGTACGCGTTGTTTAGCGTAAATCCATAAAAGCCGCCCATATCATTTCTGGGCGGTTTTCAGGTCAAAATGGAAGTTTTAGAATGGTTTTGTGAGGGAAAAATGAATAAAAATGCAAGAAAAATGGATTTTCCGCTAATTTTGTGCAATGAAATCCCGATTTTTAGGGCAATTTTCAAAGTAAACTTTTCAAGAAAAACTCATGATTTTAGTCAATTTTCAGAGAAAATATATATAAAAGATGAGGTTCCCGACAATTGTTTGTGGAGGAAACCACAAAAATGGCAGTAAATTGCGAATTTCATTTTTGAAAATTCAAATTCGCACTCTTTTTCCTCCGACAACGATGCTCCGAAATCCCGCTTATGCGCGTTGTTTAGCGTAAATCGACAAGGAAGTTAAAGAGCCGCCAATGTCATTTTTGGACGATTTTCAGATCAAAATAAAGGGTTTTCAGGAGTTTTTTGAAAGGAAAATTATGAAAA</canonical>
            <polymorphic>GCTTTTTGACCGCGTCGATTTTCAGAAGACGTGATAGCTGGCGGAGCATCTCATGGAAAAGGGTCTCATCGTCGTCAGACTGAAAAATTTTAAATTTTTTGAAAATTCTCAATGGAGCGCGCTTTCTCCTCCACTTACTTTCCCAGTGGGCTGTGCCAACAAGCTTCCCAACGAGAACGCAATCACTGCTGGAAGACAAAAAACGTCCAAATCCATGCACAAATTGCACAAATCCCTTCGAATTTGCCGCGAAACGAGAGAATCCATGCGTAGGAGACGCAGAGTTTCAACGATTTGAAGTTGGAACGATGCCAAATCGGGAACATTTTGAGTCTCTTGAATTTGCTGATTCAATCGGATCGCCGTGAATTGTTGAAGGCTGATTTCGGTGAAAATCTGGAAAAATAGTAAAAAAATCTATGTAAAAGCTCTTCTTGAGCCTTAAATTATGAAAATCAATTTTTAAATTTCAAATTCCCACACTTTTTTCTGACAACGARGCTCCGAAATCCCGCTAGTACGCGTTGTTTAGCGTAAATCCATAAAAGCCGCCCATATCATTTCTGGGCGGTTTTCAGGTCAAAATGGAAGTTTTAGAATGGTTTTGTGAGGGAAAAATGAATAAAAATGCAAGAAAAATGGATTTTCCGCTAATTTTGTGCAATGAAATCCCGATTTTTAGGGCAATTTTCAAAGTAAACTTTTCAAGAAAAACTCATGATTTTAGTCAATTTTCAGAGAAAATATATATAAAAGATGAGGTTCCCGACAATTGTTTGTGGAGGAAACCACAAAAATGGCAGTAAATTGCGAATTTCATTTTTGAAAATTCAAATTCGCACTCTTTTTCCTCCGACAACGATGCTCCGAAATCCCGCTTATGCGCGTTGTTTAGCGTAAATCGACAAGGAAGTTAAAGAGCCGCCAATGTCATTTTTGGACGATTTTCAGATCAAAATAAAGGGTTTTCAGGAGTTTTTTGAAAGGAAAATTATGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCTTCTTGAGCCTTAAATTAT</pcr_primer_p1>
		<pcr_primer_p2>GGATTTCATTGCACAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GCTCTTCTTGAGCCTTAAATTATGAAAATCAATTTTTAAATTTCAAATTCCCACACTTTTTTCTGACAACGATGCTCCGAAATCCCGCTAGTACGCGTTGTTTAGCGTAAATCCATAAAAGCCGCCCATATCATTTCTGGGCGGTTTTCAGGTCAAAATGGAAGTTTTAGAATGGTTTTGTGAGGGAAAAATGAATAAAAATGCAAGAAAAATGGATTTTCCGCTAATTTTGTGCAATGAAATCC</canonical_amplicon>
		<polymorphic_amplicon>GCTCTTCTTGAGCCTTAAATTATGAAAATCAATTTTTAAATTTCAAATTCCCACACTTTTTTCTGACAACGARGCTCCGAAATCCCGCTAGTACGCGTTGTTTAGCGTAAATCCATAAAAGCCGCCCATATCATTTCTGGGCGGTTTTCAGGTCAAAATGGAAGTTTTAGAATGGTTTTGTGAGGGAAAAATGAATAAAAATGCAAGAAAAATGGATTTTCCGCTAATTTTGTGCAATGAAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15776</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>784363</contig_pos>
        <strand>+</strand>
        <context>AATCAATTTT[G/T]AAATTTCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATCTATGTAAAAGCTCTTCTTGAGCCTTAAATTATGAAAATCAATTTT</left_flank>
        <right_flank>AAATTTCAAATTCCCACACTTTTTTCTGACAACGATGCTCCGAAATCCCG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATCTCCGTGCAGATGACGTCGGCTTTGTTCGTTCGCTTTTTGACCGCGTCGATTTTCAGAAGACGTGATAGCTGGCGGAGCATCTCATGGAAAAGGGTCTCATCGTCGTCAGACTGAAAAATTTTAAATTTTTTGAAAATTCTCAATGGAGCGCGCTTTCTCCTCCACTTACTTTCCCAGTGGGCTGTGCCAACAAGCTTCCCAACGAGAACGCAATCACTGCTGGAAGACAAAAAACGTCCAAATCCATGCACAAATTGCACAAATCCCTTCGAATTTGCCGCGAAACGAGAGAATCCATGCGTAGGAGACGCAGAGTTTCAACGATTTGAAGTTGGAACGATGCCAAATCGGGAACATTTTGAGTCTCTTGAATTTGCTGATTCAATCGGATCGCCGTGAATTGTTGAAGGCTGATTTCGGTGAAAATCTGGAAAAATAGTAAAAAAATCTATGTAAAAGCTCTTCTTGAGCCTTAAATTATGAAAATCAATTTTTAAATTTCAAATTCCCACACTTTTTTCTGACAACGATGCTCCGAAATCCCGCTAGTACGCGTTGTTTAGCGTAAATCCATAAAAGCCGCCCATATCATTTCTGGGCGGTTTTCAGGTCAAAATGGAAGTTTTAGAATGGTTTTGTGAGGGAAAAATGAATAAAAATGCAAGAAAAATGGATTTTCCGCTAATTTTGTGCAATGAAATCCCGATTTTTAGGGCAATTTTCAAAGTAAACTTTTCAAGAAAAACTCATGATTTTAGTCAATTTTCAGAGAAAATATATATAAAAGATGAGGTTCCCGACAATTGTTTGTGGAGGAAACCACAAAAATGGCAGTAAATTGCGAATTTCATTTTTGAAAATTCAAATTCGCACTCTTTTTCCTCCGACAACGATGCTCCGAAATCCCGCTTATGCGCGTTGTTTAGCGTAAATCGACAAGGAAGTTAAAGAGCCGCCAATGTCATTTTTGGACGATTTTCAGATCAAAATAAAGG</canonical>
            <polymorphic>AAATCTCCGTGCAGATGACGTCGGCTTTGTTCGTTCGCTTTTTGACCGCGTCGATTTTCAGAAGACGTGATAGCTGGCGGAGCATCTCATGGAAAAGGGTCTCATCGTCGTCAGACTGAAAAATTTTAAATTTTTTGAAAATTCTCAATGGAGCGCGCTTTCTCCTCCACTTACTTTCCCAGTGGGCTGTGCCAACAAGCTTCCCAACGAGAACGCAATCACTGCTGGAAGACAAAAAACGTCCAAATCCATGCACAAATTGCACAAATCCCTTCGAATTTGCCGCGAAACGAGAGAATCCATGCGTAGGAGACGCAGAGTTTCAACGATTTGAAGTTGGAACGATGCCAAATCGGGAACATTTTGAGTCTCTTGAATTTGCTGATTCAATCGGATCGCCGTGAATTGTTGAAGGCTGATTTCGGTGAAAATCTGGAAAAATAGTAAAAAAATCTATGTAAAAGCTCTTCTTGAGCCTTAAATTATGAAAATCAATTTTKAAATTTCAAATTCCCACACTTTTTTCTGACAACGATGCTCCGAAATCCCGCTAGTACGCGTTGTTTAGCGTAAATCCATAAAAGCCGCCCATATCATTTCTGGGCGGTTTTCAGGTCAAAATGGAAGTTTTAGAATGGTTTTGTGAGGGAAAAATGAATAAAAATGCAAGAAAAATGGATTTTCCGCTAATTTTGTGCAATGAAATCCCGATTTTTAGGGCAATTTTCAAAGTAAACTTTTCAAGAAAAACTCATGATTTTAGTCAATTTTCAGAGAAAATATATATAAAAGATGAGGTTCCCGACAATTGTTTGTGGAGGAAACCACAAAAATGGCAGTAAATTGCGAATTTCATTTTTGAAAATTCAAATTCGCACTCTTTTTCCTCCGACAACGATGCTCCGAAATCCCGCTTATGCGCGTTGTTTAGCGTAAATCGACAAGGAAGTTAAAGAGCCGCCAATGTCATTTTTGGACGATTTTCAGATCAAAATAAAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 373 127</canonical_bands>
                <polymorphic_bands>873 127</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>451 352 126 50 21</canonical_bands>
                <polymorphic_bands>472 352 126 50</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGAATTGTTGAAGGCTGAT</pcr_primer_p1>
		<pcr_primer_p2>CTCACAAAACCATTCTAAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTGAATTGTTGAAGGCTGATTTCGGTGAAAATCTGGAAAAATAGTAAAAAAATCTATGTAAAAGCTCTTCTTGAGCCTTAAATTATGAAAATCAATTTTTAAATTTCAAATTCCCACACTTTTTTCTGACAACGATGCTCCGAAATCCCGCTAGTACGCGTTGTTTAGCGTAAATCCATAAAAGCCGCCCATATCATTTCTGGGCGGTTTTCAGGTCAAAATGGAAGTTTTAGAATGGTTTTGTGAG</canonical_amplicon>
		<polymorphic_amplicon>GTGAATTGTTGAAGGCTGATTTCGGTGAAAATCTGGAAAAATAGTAAAAAAATCTATGTAAAAGCTCTTCTTGAGCCTTAAATTATGAAAATCAATTTTKAAATTTCAAATTCCCACACTTTTTTCTGACAACGATGCTCCGAAATCCCGCTAGTACGCGTTGTTTAGCGTAAATCCATAAAAGCCGCCCATATCATTTCTGGGCGGTTTTCAGGTCAAAATGGAAGTTTTAGAATGGTTTTGTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15778</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>7582</contig_pos>
        <strand>+</strand>
        <context>TGGATTTAGA[A/C]GACGTCAGCG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGTTATGAATCAACTCGAGTGGTCCTTTGGAGTGTCTTCTGGATTTAGA</left_flank>
        <right_flank>GACGTCAGCGATTCTGTAGACGTGCATCGCCAACGTATCGCTTGTGATGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCTCTTTTTACTACACGAAATGCAAACAGACAATGATGGTTTGTGTCCACTTTTTTCTCACTACTATTTATTTTCTCTTTGTGTATCCTAAAAGAGGAGTGGTGTGGTCAAAAAAAATTTCAAACCTCATTCATCGCATTTCTCGTCAATTGATTCGGATTCACTTTTTGATGAGTCTCCGCGACGGGTCCACGAGTCTGAAATTTATAAAATTTTCGGTACAAAATTTGGGAAAATGGGGAAAAATCCCGGTGAAAATTGGATGATTTGAAGTCAATTTTTTATTTTTTTTCCCGCATTTTTTGGTAGATCAAATCTATTTTTTGGCATTTTTAGACCTATCCTGAAATGCTTACAGAAATTTCATGTAGCGAAACTGTCGACGAGATCAGGGTGGGCGGTCCCACAACATTTAGATCCCTCTTCTGCACCGCCTTCTTCGCCATCAAGTTATGAATCAACTCGAGTGGTCCTTTGGAGTGTCTTCTGGATTTAGACGACGTCAGCGATTCTGTAGACGTGCATCGCCAACGTATCGCTTGTGATGACGTGGCGTGCTTCATGTTCTCCATGGCTTGAAGTAGCTTGTCAGCAGCCATGAGCTTGAACTCATCCTCCTTGTTCAGCTCGAAACATGACGCTCTTCTAGACGCCATTGAGATTCTCGAGCATGATGACGTGGAATTTTCAGAAGATGTGGAAGAATCAGAAGACGTGCCGGTGGATTTCAAGTTGTATTGCGATGAGGCGTGACGAAGAGGCGCCAACCGTCGGACCACTGGCGGAAGATGACGTGGCAATTCATCCAGATCATCATCCGATCCGGATGAATCAATGAAATGGAGCATTCGTCGTGGATGCGTAAGACGACGTGGTGACTGTAGCGATGGTGTAGCCTTGAAGACGTTGAAATGGTCGGGAGGTAACATATGTAGGACGGAAGGAAGAAAAGGAGGAAGAAGAATGAAAAAAAATGAACATGGTCAGAAAAAAGGAGA</canonical>
            <polymorphic>TTCCTCTTTTTACTACACGAAATGCAAACAGACAATGATGGTTTGTGTCCACTTTTTTCTCACTACTATTTATTTTCTCTTTGTGTATCCTAAAAGAGGAGTGGTGTGGTCAAAAAAAATTTCAAACCTCATTCATCGCATTTCTCGTCAATTGATTCGGATTCACTTTTTGATGAGTCTCCGCGACGGGTCCACGAGTCTGAAATTTATAAAATTTTCGGTACAAAATTTGGGAAAATGGGGAAAAATCCCGGTGAAAATTGGATGATTTGAAGTCAATTTTTTATTTTTTTTCCCGCATTTTTTGGTAGATCAAATCTATTTTTTGGCATTTTTAGACCTATCCTGAAATGCTTACAGAAATTTCATGTAGCGAAACTGTCGACGAGATCAGGGTGGGCGGTCCCACAACATTTAGATCCCTCTTCTGCACCGCCTTCTTCGCCATCAAGTTATGAATCAACTCGAGTGGTCCTTTGGAGTGTCTTCTGGATTTAGAMGACGTCAGCGATTCTGTAGACGTGCATCGCCAACGTATCGCTTGTGATGACGTGGCGTGCTTCATGTTCTCCATGGCTTGAAGTAGCTTGTCAGCAGCCATGAGCTTGAACTCATCCTCCTTGTTCAGCTCGAAACATGACGCTCTTCTAGACGCCATTGAGATTCTCGAGCATGATGACGTGGAATTTTCAGAAGATGTGGAAGAATCAGAAGACGTGCCGGTGGATTTCAAGTTGTATTGCGATGAGGCGTGACGAAGAGGCGCCAACCGTCGGACCACTGGCGGAAGATGACGTGGCAATTCATCCAGATCATCATCCGATCCGGATGAATCAATGAAATGGAGCATTCGTCGTGGATGCGTAAGACGACGTGGTGACTGTAGCGATGGTGTAGCCTTGAAGACGTTGAAATGGTCGGGAGGTAACATATGTAGGACGGAAGGAAGAAAAGGAGGAAGAAGAATGAAAAAAAATGAACATGGTCAGAAAAAAGGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNGTC</site>
                <isoschizomers>
                    <enzyme>AspI</enzyme>
                    <enzyme>PflFI</enzyme>
                    <enzyme>PsyI</enzyme>
                    <enzyme>TelI</enzyme>
                    <enzyme>Tth111I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>271 199 188 126 117 81 18</canonical_bands>
                <polymorphic_bands>388 199 188 126 81 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACAACATTTAGATCCCTCTTC</pcr_primer_p1>
		<pcr_primer_p2>GTCTAGAAGAGCGTCATGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CACAACATTTAGATCCCTCTTCTGCACCGCCTTCTTCGCCATCAAGTTATGAATCAACTCGAGTGGTCCTTTGGAGTGTCTTCTGGATTTAGACGACGTCAGCGATTCTGTAGACGTGCATCGCCAACGTATCGCTTGTGATGACGTGGCGTGCTTCATGTTCTCCATGGCTTGAAGTAGCTTGTCAGCAGCCATGAGCTTGAACTCATCCTCCTTGTTCAGCTCGAAACATGACGCTCTTCTAGAC</canonical_amplicon>
		<polymorphic_amplicon>CACAACATTTAGATCCCTCTTCTGCACCGCCTTCTTCGCCATCAAGTTATGAATCAACTCGAGTGGTCCTTTGGAGTGTCTTCTGGATTTAGAMGACGTCAGCGATTCTGTAGACGTGCATCGCCAACGTATCGCTTGTGATGACGTGGCGTGCTTCATGTTCTCCATGGCTTGAAGTAGCTTGTCAGCAGCCATGAGCTTGAACTCATCCTCCTTGTTCAGCTCGAAACATGACGCTCTTCTAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15779</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>9665</contig_pos>
        <strand></strand>
        <context>TCCGGACACA[A/C]AGATTTACAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTATAGACCAAGAAGGATATTCTAGACAAAACTTGAACATCCGGACACA</left_flank>
        <right_flank>AGATTTACAGAGAGACTACATTTTTTCAGCCAAAGGTCAAAAAATAAGGC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGGACCACGGGCGGACCAACAACAACAATAACGTCTTCAGGACAGTTTTTCTTCTGAAGATGGAATAATTGGACGACAGGTGTCTTGGAAACAGAAATTTGGGAAGGAAATAAGGAAAACGGGAAGCCAGAAAAAAAGTGAAATTTAATTGAGAATCGAAAAACGACGGTCAAGTCAATTGGGGTGAGGTGAAAATAGGTGGCGGACATTTAGAGGACATCTGGATAGACAGACCTACAGATGGATAGGAACATTTTCAAAAAACTAGATTGTGTTAGTTGAAATCATACTGTTTCGGACCTCGAGATGCCTAGAAACATGGCTAGAGCTAATAGAAAAAATAGCTAGTGGTATAAGTTGCTGATAGAAAAACTTGCTAATAGCAAAAATTGCTAATAAGAGACTTGAAAATAGCATAGCGGCAGAAAACAACTAAAAAGAAGTCCTAGTATAGACCAAGAAGGATATTCTAGACAAAACTTGAACATCCGGACACAAAGATTTACAGAGAGACTACATTTTTTCAGCCAAAGGTCAAAAAATAAGGCTTTTACGGCTTTTTGAAGCCATATTTCAGGCTTCAAAGGTGTTTTTCAACAGGCTGAATAAAAAGTTCCGCCTGTTTTTAATAAAAGAAGACCCAACTGAATAATAACAAGTATTGGGGAACGAATATGTATGAATAAGCTCTTGTTTCCATGGAAATCAAGAGAGCTGCTCATTTTGTATTTTGTGTCTGGACCTTAATACCCCGATTAATCGGAGGCAATTTCGGAGTATTCTGAAGATGGGTATTCAGAATACCGCGTAAATGTATGTAGGCGTTCCGACCCCAGGAAATTAGAAATAAGGCAGGGAAGTTGGAAACTAGACGAAGATATATACTAGTAAGACATATCGTACAACTACGCCTACGCAGATGGAAATTATGGGAAAAATGACAAGGAAATTAATAAGAAGGAGTTTAAAAATGTTCAAAAAATGTGCTCCAGAAATTT</canonical>
            <polymorphic>AACGGACCACGGGCGGACCAACAACAACAATAACGTCTTCAGGACAGTTTTTCTTCTGAAGATGGAATAATTGGACGACAGGTGTCTTGGAAACAGAAATTTGGGAAGGAAATAAGGAAAACGGGAAGCCAGAAAAAAAGTGAAATTTAATTGAGAATCGAAAAACGACGGTCAAGTCAATTGGGGTGAGGTGAAAATAGGTGGCGGACATTTAGAGGACATCTGGATAGACAGACCTACAGATGGATAGGAACATTTTCAAAAAACTAGATTGTGTTAGTTGAAATCATACTGTTTCGGACCTCGAGATGCCTAGAAACATGGCTAGAGCTAATAGAAAAAATAGCTAGTGGTATAAGTTGCTGATAGAAAAACTTGCTAATAGCAAAAATTGCTAATAAGAGACTTGAAAATAGCATAGCGGCAGAAAACAACTAAAAAGAAGTCCTAGTATAGACCAAGAAGGATATTCTAGACAAAACTTGAACATCCGGACACAMAGATTTACAGAGAGACTACATTTTTTCAGCCAAAGGTCAAAAAATAAGGCTTTTACGGCTTTTTGAAGCCATATTTCAGGCTTCAAAGGTGTTTTTCAACAGGCTGAATAAAAAGTTCCGCCTGTTTTTAATAAAAGAAGACCCAACTGAATAATAACAAGTATTGGGGAACGAATATGTATGAATAAGCTCTTGTTTCCATGGAAATCAAGAGAGCTGCTCATTTTGTATTTTGTGTCTGGACCTTAATACCCCGATTAATCGGAGGCAATTTCGGAGTATTCTGAAGATGGGTATTCAGAATACCGCGTAAATGTATGTAGGCGTTCCGACCCCAGGAAATTAGAAATAAGGCAGGGAAGTTGGAAACTAGACGAAGATATATACTAGTAAGACATATCGTACAACTACGCCTACGCAGATGGAAATTATGGGAAAAATGACAAGGAAATTAATAAGAAGGAGTTTAAAAATGTTCAAAAAATGTGCTCCAGAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCCTAGTATAGACCAAGAAGGAT</pcr_primer_p1>
		<pcr_primer_p2>GCTTATTCATACATATTCGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGTCCTAGTATAGACCAAGAAGGATATTCTAGACAAAACTTGAACATCCGGACACAAAGATTTACAGAGAGACTACATTTTTTCAGCCAAAGGTCAAAAAATAAGGCTTTTACGGCTTTTTGAAGCCATATTTCAGGCTTCAAAGGTGTTTTTCAACAGGCTGAATAAAAAGTTCCGCCTGTTTTTAATAAAAGAAGACCCAACTGAATAATAACAAGTATTGGGGAACGAATATGTATGAATAAGC</canonical_amplicon>
		<polymorphic_amplicon>AGTCCTAGTATAGACCAAGAAGGATATTCTAGACAAAACTTGAACATCCGGACACAMAGATTTACAGAGAGACTACATTTTTTCAGCCAAAGGTCAAAAAATAAGGCTTTTACGGCTTTTTGAAGCCATATTTCAGGCTTCAAAGGTGTTTTTCAACAGGCTGAATAAAAAGTTCCGCCTGTTTTTAATAAAAGAAGACCCAACTGAATAATAACAAGTATTGGGGAACGAATATGTATGAATAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15780</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>9597</contig_pos>
        <strand>+</strand>
        <context>CGGCAGAAAA[A/C]AACTAAAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATAGCAAAAATTGCTAATAAGAGACTTGAAAATAGCATAGCGGCAGAAAA</left_flank>
        <right_flank>AACTAAAAAGAAGTCCTAGTATAGACCAAGAAGGATATTCTAGACAAAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACATACACCCACACTCATTCATATACTAATAAATCATTTCTTCCGTTCCGCCCGTTACCGCGCGGAAAACGGACCACGGGCGGACCAACAACAACAATAACGTCTTCAGGACAGTTTTTCTTCTGAAGATGGAATAATTGGACGACAGGTGTCTTGGAAACAGAAATTTGGGAAGGAAATAAGGAAAACGGGAAGCCAGAAAAAAAGTGAAATTTAATTGAGAATCGAAAAACGACGGTCAAGTCAATTGGGGTGAGGTGAAAATAGGTGGCGGACATTTAGAGGACATCTGGATAGACAGACCTACAGATGGATAGGAACATTTTCAAAAAACTAGATTGTGTTAGTTGAAATCATACTGTTTCGGACCTCGAGATGCCTAGAAACATGGCTAGAGCTAATAGAAAAAATAGCTAGTGGTATAAGTTGCTGATAGAAAAACTTGCTAATAGCAAAAATTGCTAATAAGAGACTTGAAAATAGCATAGCGGCAGAAAACAACTAAAAAGAAGTCCTAGTATAGACCAAGAAGGATATTCTAGACAAAACTTGAACATCCGGACACAAAGATTTACAGAGAGACTACATTTTTTCAGCCAAAGGTCAAAAAATAAGGCTTTTACGGCTTTTTGAAGCCATATTTCAGGCTTCAAAGGTGTTTTTCAACAGGCTGAATAAAAAGTTCCGCCTGTTTTTAATAAAAGAAGACCCAACTGAATAATAACAAGTATTGGGGAACGAATATGTATGAATAAGCTCTTGTTTCCATGGAAATCAAGAGAGCTGCTCATTTTGTATTTTGTGTCTGGACCTTAATACCCCGATTAATCGGAGGCAATTTCGGAGTATTCTGAAGATGGGTATTCAGAATACCGCGTAAATGTATGTAGGCGTTCCGACCCCAGGAAATTAGAAATAAGGCAGGGAAGTTGGAAACTAGACGAAGATATATACTAGTAAGACATATCGTACAACTACGCCTACGCAGATGGAAATTAT</canonical>
            <polymorphic>CACATACACCCACACTCATTCATATACTAATAAATCATTTCTTCCGTTCCGCCCGTTACCGCGCGGAAAACGGACCACGGGCGGACCAACAACAACAATAACGTCTTCAGGACAGTTTTTCTTCTGAAGATGGAATAATTGGACGACAGGTGTCTTGGAAACAGAAATTTGGGAAGGAAATAAGGAAAACGGGAAGCCAGAAAAAAAGTGAAATTTAATTGAGAATCGAAAAACGACGGTCAAGTCAATTGGGGTGAGGTGAAAATAGGTGGCGGACATTTAGAGGACATCTGGATAGACAGACCTACAGATGGATAGGAACATTTTCAAAAAACTAGATTGTGTTAGTTGAAATCATACTGTTTCGGACCTCGAGATGCCTAGAAACATGGCTAGAGCTAATAGAAAAAATAGCTAGTGGTATAAGTTGCTGATAGAAAAACTTGCTAATAGCAAAAATTGCTAATAAGAGACTTGAAAATAGCATAGCGGCAGAAAAMAACTAAAAAGAAGTCCTAGTATAGACCAAGAAGGATATTCTAGACAAAACTTGAACATCCGGACACAAAGATTTACAGAGAGACTACATTTTTTCAGCCAAAGGTCAAAAAATAAGGCTTTTACGGCTTTTTGAAGCCATATTTCAGGCTTCAAAGGTGTTTTTCAACAGGCTGAATAAAAAGTTCCGCCTGTTTTTAATAAAAGAAGACCCAACTGAATAATAACAAGTATTGGGGAACGAATATGTATGAATAAGCTCTTGTTTCCATGGAAATCAAGAGAGCTGCTCATTTTGTATTTTGTGTCTGGACCTTAATACCCCGATTAATCGGAGGCAATTTCGGAGTATTCTGAAGATGGGTATTCAGAATACCGCGTAAATGTATGTAGGCGTTCCGACCCCAGGAAATTAGAAATAAGGCAGGGAAGTTGGAAACTAGACGAAGATATATACTAGTAAGACATATCGTACAACTACGCCTACGCAGATGGAAATTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATGGATAGGAACATTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>GGATGTTCAAGTTTTGTCTAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGATGGATAGGAACATTTTCAAAAAACTAGATTGTGTTAGTTGAAATCATACTGTTTCGGACCTCGAGATGCCTAGAAACATGGCTAGAGCTAATAGAAAAAATAGCTAGTGGTATAAGTTGCTGATAGAAAAACTTGCTAATAGCAAAAATTGCTAATAAGAGACTTGAAAATAGCATAGCGGCAGAAAACAACTAAAAAGAAGTCCTAGTATAGACCAAGAAGGATATTCTAGACAAAACTTGAACATCC</canonical_amplicon>
		<polymorphic_amplicon>AGATGGATAGGAACATTTTCAAAAAACTAGATTGTGTTAGTTGAAATCATACTGTTTCGGACCTCGAGATGCCTAGAAACATGGCTAGAGCTAATAGAAAAAATAGCTAGTGGTATAAGTTGCTGATAGAAAAACTTGCTAATAGCAAAAATTGCTAATAAGAGACTTGAAAATAGCATAGCGGCAGAAAAMAACTAAAAAGAAGTCCTAGTATAGACCAAGAAGGATATTCTAGACAAAACTTGAACATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15781</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>9579</contig_pos>
        <strand>+</strand>
        <context>GACTTGAAAA[A/T]AGCATAGCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGATAGAAAAACTTGCTAATAGCAAAAATTGCTAATAAGAGACTTGAAAA</left_flank>
        <right_flank>AGCATAGCGGCAGAAAACAACTAAAAAGAAGTCCTAGTATAGACCAAGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTTGGCATTCAGCCAACACATACACCCACACTCATTCATATACTAATAAATCATTTCTTCCGTTCCGCCCGTTACCGCGCGGAAAACGGACCACGGGCGGACCAACAACAACAATAACGTCTTCAGGACAGTTTTTCTTCTGAAGATGGAATAATTGGACGACAGGTGTCTTGGAAACAGAAATTTGGGAAGGAAATAAGGAAAACGGGAAGCCAGAAAAAAAGTGAAATTTAATTGAGAATCGAAAAACGACGGTCAAGTCAATTGGGGTGAGGTGAAAATAGGTGGCGGACATTTAGAGGACATCTGGATAGACAGACCTACAGATGGATAGGAACATTTTCAAAAAACTAGATTGTGTTAGTTGAAATCATACTGTTTCGGACCTCGAGATGCCTAGAAACATGGCTAGAGCTAATAGAAAAAATAGCTAGTGGTATAAGTTGCTGATAGAAAAACTTGCTAATAGCAAAAATTGCTAATAAGAGACTTGAAAATAGCATAGCGGCAGAAAACAACTAAAAAGAAGTCCTAGTATAGACCAAGAAGGATATTCTAGACAAAACTTGAACATCCGGACACAAAGATTTACAGAGAGACTACATTTTTTCAGCCAAAGGTCAAAAAATAAGGCTTTTACGGCTTTTTGAAGCCATATTTCAGGCTTCAAAGGTGTTTTTCAACAGGCTGAATAAAAAGTTCCGCCTGTTTTTAATAAAAGAAGACCCAACTGAATAATAACAAGTATTGGGGAACGAATATGTATGAATAAGCTCTTGTTTCCATGGAAATCAAGAGAGCTGCTCATTTTGTATTTTGTGTCTGGACCTTAATACCCCGATTAATCGGAGGCAATTTCGGAGTATTCTGAAGATGGGTATTCAGAATACCGCGTAAATGTATGTAGGCGTTCCGACCCCAGGAAATTAGAAATAAGGCAGGGAAGTTGGAAACTAGACGAAGATATATACTAGTAAGACATATCGTACAACTACGCC</canonical>
            <polymorphic>GTCTTGGCATTCAGCCAACACATACACCCACACTCATTCATATACTAATAAATCATTTCTTCCGTTCCGCCCGTTACCGCGCGGAAAACGGACCACGGGCGGACCAACAACAACAATAACGTCTTCAGGACAGTTTTTCTTCTGAAGATGGAATAATTGGACGACAGGTGTCTTGGAAACAGAAATTTGGGAAGGAAATAAGGAAAACGGGAAGCCAGAAAAAAAGTGAAATTTAATTGAGAATCGAAAAACGACGGTCAAGTCAATTGGGGTGAGGTGAAAATAGGTGGCGGACATTTAGAGGACATCTGGATAGACAGACCTACAGATGGATAGGAACATTTTCAAAAAACTAGATTGTGTTAGTTGAAATCATACTGTTTCGGACCTCGAGATGCCTAGAAACATGGCTAGAGCTAATAGAAAAAATAGCTAGTGGTATAAGTTGCTGATAGAAAAACTTGCTAATAGCAAAAATTGCTAATAAGAGACTTGAAAAWAGCATAGCGGCAGAAAACAACTAAAAAGAAGTCCTAGTATAGACCAAGAAGGATATTCTAGACAAAACTTGAACATCCGGACACAAAGATTTACAGAGAGACTACATTTTTTCAGCCAAAGGTCAAAAAATAAGGCTTTTACGGCTTTTTGAAGCCATATTTCAGGCTTCAAAGGTGTTTTTCAACAGGCTGAATAAAAAGTTCCGCCTGTTTTTAATAAAAGAAGACCCAACTGAATAATAACAAGTATTGGGGAACGAATATGTATGAATAAGCTCTTGTTTCCATGGAAATCAAGAGAGCTGCTCATTTTGTATTTTGTGTCTGGACCTTAATACCCCGATTAATCGGAGGCAATTTCGGAGTATTCTGAAGATGGGTATTCAGAATACCGCGTAAATGTATGTAGGCGTTCCGACCCCAGGAAATTAGAAATAAGGCAGGGAAGTTGGAAACTAGACGAAGATATATACTAGTAAGACATATCGTACAACTACGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTACAGATGGATAGGAACATT</pcr_primer_p1>
		<pcr_primer_p2>TGTCTAGAATATCCTTCTTGGTC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACCTACAGATGGATAGGAACATTTTCAAAAAACTAGATTGTGTTAGTTGAAATCATACTGTTTCGGACCTCGAGATGCCTAGAAACATGGCTAGAGCTAATAGAAAAAATAGCTAGTGGTATAAGTTGCTGATAGAAAAACTTGCTAATAGCAAAAATTGCTAATAAGAGACTTGAAAATAGCATAGCGGCAGAAAACAACTAAAAAGAAGTCCTAGTATAGACCAAGAAGGATATTCTAGACA</canonical_amplicon>
		<polymorphic_amplicon>ACCTACAGATGGATAGGAACATTTTCAAAAAACTAGATTGTGTTAGTTGAAATCATACTGTTTCGGACCTCGAGATGCCTAGAAACATGGCTAGAGCTAATAGAAAAAATAGCTAGTGGTATAAGTTGCTGATAGAAAAACTTGCTAATAGCAAAAATTGCTAATAAGAGACTTGAAAAWAGCATAGCGGCAGAAAACAACTAAAAAGAAGTCCTAGTATAGACCAAGAAGGATATTCTAGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15782</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>9535</contig_pos>
        <strand></strand>
        <context>TTGCTGATAG[A/C]AAAACTTGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATGGCTAGAGCTAATAGAAAAAATAGCTAGTGGTATAAGTTGCTGATAG</left_flank>
        <right_flank>AAAACTTGCTAATAGCAAAAATTGCTAATAAGAGACTTGAAAATAGCATA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCCTCTCACTTGTCTCAAGAATAAGAAGAAGTGCGTATAATGGGTCTTGGCATTCAGCCAACACATACACCCACACTCATTCATATACTAATAAATCATTTCTTCCGTTCCGCCCGTTACCGCGCGGAAAACGGACCACGGGCGGACCAACAACAACAATAACGTCTTCAGGACAGTTTTTCTTCTGAAGATGGAATAATTGGACGACAGGTGTCTTGGAAACAGAAATTTGGGAAGGAAATAAGGAAAACGGGAAGCCAGAAAAAAAGTGAAATTTAATTGAGAATCGAAAAACGACGGTCAAGTCAATTGGGGTGAGGTGAAAATAGGTGGCGGACATTTAGAGGACATCTGGATAGACAGACCTACAGATGGATAGGAACATTTTCAAAAAACTAGATTGTGTTAGTTGAAATCATACTGTTTCGGACCTCGAGATGCCTAGAAACATGGCTAGAGCTAATAGAAAAAATAGCTAGTGGTATAAGTTGCTGATAGAAAAACTTGCTAATAGCAAAAATTGCTAATAAGAGACTTGAAAATAGCATAGCGGCAGAAAACAACTAAAAAGAAGTCCTAGTATAGACCAAGAAGGATATTCTAGACAAAACTTGAACATCCGGACACAAAGATTTACAGAGAGACTACATTTTTTCAGCCAAAGGTCAAAAAATAAGGCTTTTACGGCTTTTTGAAGCCATATTTCAGGCTTCAAAGGTGTTTTTCAACAGGCTGAATAAAAAGTTCCGCCTGTTTTTAATAAAAGAAGACCCAACTGAATAATAACAAGTATTGGGGAACGAATATGTATGAATAAGCTCTTGTTTCCATGGAAATCAAGAGAGCTGCTCATTTTGTATTTTGTGTCTGGACCTTAATACCCCGATTAATCGGAGGCAATTTCGGAGTATTCTGAAGATGGGTATTCAGAATACCGCGTAAATGTATGTAGGCGTTCCGACCCCAGGAAATTAGAAATAAGGCAGGGAAGTTGGAAAC</canonical>
            <polymorphic>CCCCTCTCACTTGTCTCAAGAATAAGAAGAAGTGCGTATAATGGGTCTTGGCATTCAGCCAACACATACACCCACACTCATTCATATACTAATAAATCATTTCTTCCGTTCCGCCCGTTACCGCGCGGAAAACGGACCACGGGCGGACCAACAACAACAATAACGTCTTCAGGACAGTTTTTCTTCTGAAGATGGAATAATTGGACGACAGGTGTCTTGGAAACAGAAATTTGGGAAGGAAATAAGGAAAACGGGAAGCCAGAAAAAAAGTGAAATTTAATTGAGAATCGAAAAACGACGGTCAAGTCAATTGGGGTGAGGTGAAAATAGGTGGCGGACATTTAGAGGACATCTGGATAGACAGACCTACAGATGGATAGGAACATTTTCAAAAAACTAGATTGTGTTAGTTGAAATCATACTGTTTCGGACCTCGAGATGCCTAGAAACATGGCTAGAGCTAATAGAAAAAATAGCTAGTGGTATAAGTTGCTGATAGMAAAACTTGCTAATAGCAAAAATTGCTAATAAGAGACTTGAAAATAGCATAGCGGCAGAAAACAACTAAAAAGAAGTCCTAGTATAGACCAAGAAGGATATTCTAGACAAAACTTGAACATCCGGACACAAAGATTTACAGAGAGACTACATTTTTTCAGCCAAAGGTCAAAAAATAAGGCTTTTACGGCTTTTTGAAGCCATATTTCAGGCTTCAAAGGTGTTTTTCAACAGGCTGAATAAAAAGTTCCGCCTGTTTTTAATAAAAGAAGACCCAACTGAATAATAACAAGTATTGGGGAACGAATATGTATGAATAAGCTCTTGTTTCCATGGAAATCAAGAGAGCTGCTCATTTTGTATTTTGTGTCTGGACCTTAATACCCCGATTAATCGGAGGCAATTTCGGAGTATTCTGAAGATGGGTATTCAGAATACCGCGTAAATGTATGTAGGCGTTCCGACCCCAGGAAATTAGAAATAAGGCAGGGAAGTTGGAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATCTGGATAGACAGACCTACA</pcr_primer_p1>
		<pcr_primer_p2>TCCTTCTTGGTCTATACTAGGACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACATCTGGATAGACAGACCTACAGATGGATAGGAACATTTTCAAAAAACTAGATTGTGTTAGTTGAAATCATACTGTTTCGGACCTCGAGATGCCTAGAAACATGGCTAGAGCTAATAGAAAAAATAGCTAGTGGTATAAGTTGCTGATAGAAAAACTTGCTAATAGCAAAAATTGCTAATAAGAGACTTGAAAATAGCATAGCGGCAGAAAACAACTAAAAAGAAGTCCTAGTATAGACCAAGAAGGA</canonical_amplicon>
		<polymorphic_amplicon>ACATCTGGATAGACAGACCTACAGATGGATAGGAACATTTTCAAAAAACTAGATTGTGTTAGTTGAAATCATACTGTTTCGGACCTCGAGATGCCTAGAAACATGGCTAGAGCTAATAGAAAAAATAGCTAGTGGTATAAGTTGCTGATAGMAAAACTTGCTAATAGCAAAAATTGCTAATAAGAGACTTGAAAATAGCATAGCGGCAGAAAACAACTAAAAAGAAGTCCTAGTATAGACCAAGAAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15783</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>42447</contig_pos>
        <strand>+</strand>
        <context>TCAGGTCAAG[G/T]GGTGAGAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAGGAGGAGGAGAGAGGAAGGAAGGCTTAGGACTTATGAATCAGGTCAAG</left_flank>
        <right_flank>GGTGAGAGAAGGTGACAAGTTTTGCGATGTTTTTGTTGTTGTATTTTTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACTGATAAAATATTGGTGATATTATGATAAACATTTTGTTAGTTGACAACTTTTTGATATCTCTTATAGAAATTGAGATAATTGAGTTGCAAGCATAAAAGTCACAAGCGCTGCCGACCAAATAGCTCGCGCCGACAGATACATACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGATATCAAAAATTTGTCAACTGATAAAATGTTTATCATATTATCAGAAATATTTAATTACTTATCAACTTTTGATATCTTTTACGAGAACCGAGATAAATTGGCTCAAAGAACAATTACGGTTATACTTTCTTCAGAATAAGAGGACCTTGGTCCATAACTCAGTTCTTGTCACCAGGGAATCACCTCTGGCTGGGTACAAACATACTAAAACACACGTGTTGGGCAAATATTGGCATAGGCAAAAGATGTAACGGTTAGGTTGGAAGAGGAGGAGGAGGAGAGAGGAAGGAAGGCTTAGGACTTATGAATCAGGTCAAGGGGTGAGAGAAGGTGACAAGTTTTGCGATGTTTTTGTTGTTGTATTTTTTTGTCAAAACCCAACTTTTCAAAATTTACAATTAACAGTCTCATAGACCCAAAAACATTTTTTTGGCAAGATACCAATCTACAGAATATATTACGAGATCTCAATAAAAAACAAGAATACTCATCCAACACCATTATTTCACCAATTCTTCCCAAATGTTGCCGAAAAAAGAGAAAAGTGACGCTTCTTCATCTTCTGATGATCACTTTTCCTGTTCCTTTCGATTTCCACCCATTCATTCTATTATTTTTCTCTGCTTCTCTAGTTAGCTCTCCGAAAATCCGACACTATTTCTATTTTGGGTCTTATCAATGTCCCTCTCCGTTTTTGGCATTCTTTATTCTCTCTATAGATTGATTGGCAAGTGGTTGATGAAGAAAAAAAAAGACGGGCGGTTCGGAGATATTGACAAGTTGATGATTTCGAGAATTTTTAGGTTTTTAGGGTTCAAC</canonical>
            <polymorphic>TAACTGATAAAATATTGGTGATATTATGATAAACATTTTGTTAGTTGACAACTTTTTGATATCTCTTATAGAAATTGAGATAATTGAGTTGCAAGCATAAAAGTCACAAGCGCTGCCGACCAAATAGCTCGCGCCGACAGATACATACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGATATCAAAAATTTGTCAACTGATAAAATGTTTATCATATTATCAGAAATATTTAATTACTTATCAACTTTTGATATCTTTTACGAGAACCGAGATAAATTGGCTCAAAGAACAATTACGGTTATACTTTCTTCAGAATAAGAGGACCTTGGTCCATAACTCAGTTCTTGTCACCAGGGAATCACCTCTGGCTGGGTACAAACATACTAAAACACACGTGTTGGGCAAATATTGGCATAGGCAAAAGATGTAACGGTTAGGTTGGAAGAGGAGGAGGAGGAGAGAGGAAGGAAGGCTTAGGACTTATGAATCAGGTCAAGKGGTGAGAGAAGGTGACAAGTTTTGCGATGTTTTTGTTGTTGTATTTTTTTGTCAAAACCCAACTTTTCAAAATTTACAATTAACAGTCTCATAGACCCAAAAACATTTTTTTGGCAAGATACCAATCTACAGAATATATTACGAGATCTCAATAAAAAACAAGAATACTCATCCAACACCATTATTTCACCAATTCTTCCCAAATGTTGCCGAAAAAAGAGAAAAGTGACGCTTCTTCATCTTCTGATGATCACTTTTCCTGTTCCTTTCGATTTCCACCCATTCATTCTATTATTTTTCTCTGCTTCTCTAGTTAGCTCTCCGAAAATCCGACACTATTTCTATTTTGGGTCTTATCAATGTCCCTCTCCGTTTTTGGCATTCTTTATTCTCTCTATAGATTGATTGGCAAGTGGTTGATGAAGAAAAAAAAAGACGGGCGGTTCGGAGATATTGACAAGTTGATGATTTCGAGAATTTTTAGGTTTTTAGGGTTCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAACGGTTAGGTTGGAAGAG</pcr_primer_p1>
		<pcr_primer_p2>TGTTGGATGAGTATTCTTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAACGGTTAGGTTGGAAGAGGAGGAGGAGGAGAGAGGAAGGAAGGCTTAGGACTTATGAATCAGGTCAAGGGGTGAGAGAAGGTGACAAGTTTTGCGATGTTTTTGTTGTTGTATTTTTTTGTCAAAACCCAACTTTTCAAAATTTACAATTAACAGTCTCATAGACCCAAAAACATTTTTTTGGCAAGATACCAATCTACAGAATATATTACGAGATCTCAATAAAAAACAAGAATACTCATCCAACA</canonical_amplicon>
		<polymorphic_amplicon>GTAACGGTTAGGTTGGAAGAGGAGGAGGAGGAGAGAGGAAGGAAGGCTTAGGACTTATGAATCAGGTCAAGKGGTGAGAGAAGGTGACAAGTTTTGCGATGTTTTTGTTGTTGTATTTTTTTGTCAAAACCCAACTTTTCAAAATTTACAATTAACAGTCTCATAGACCCAAAAACATTTTTTTGGCAAGATACCAATCTACAGAATATATTACGAGATCTCAATAAAAAACAAGAATACTCATCCAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15784</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>42525</contig_pos>
        <strand></strand>
        <context>CAAAATTTAC[A/C]MTTAACAGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGTTTTTGTTGTTGTATTTTTTTGTCAAAACCCAACTTTTCAAAATTTAC</left_flank>
        <right_flank>ATTAACAGTCTCATAGACCCAAAAACATTTTTTTGGCAAGATACCAATCT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATAATTGAGTTGCAAGCATAAAAGTCACAAGCGCTGCCGACCAAATAGCTCGCGCCGACAGATACATACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGATATCAAAAATTTGTCAACTGATAAAATGTTTATCATATTATCAGAAATATTTAATTACTTATCAACTTTTGATATCTTTTACGAGAACCGAGATAAATTGGCTCAAAGAACAATTACGGTTATACTTTCTTCAGAATAAGAGGACCTTGGTCCATAACTCAGTTCTTGTCACCAGGGAATCACCTCTGGCTGGGTACAAACATACTAAAACACACGTGTTGGGCAAATATTGGCATAGGCAAAAGATGTAACGGTTAGGTTGGAAGAGGAGGAGGAGGAGAGAGGAAGGAAGGCTTAGGACTTATGAATCAGGTCAAGGGGTGAGAGAAGGTGACAAGTTTTGCGATGTTTTTGTTGTTGTATTTTTTTGTCAAAACCCAACTTTTCAAAATTTACAATTAACAGTCTCATAGACCCAAAAACATTTTTTTGGCAAGATACCAATCTACAGAATATATTACGAGATCTCAATAAAAAACAAGAATACTCATCCAACACCATTATTTCACCAATTCTTCCCAAATGTTGCCGAAAAAAGAGAAAAGTGACGCTTCTTCATCTTCTGATGATCACTTTTCCTGTTCCTTTCGATTTCCACCCATTCATTCTATTATTTTTCTCTGCTTCTCTAGTTAGCTCTCCGAAAATCCGACACTATTTCTATTTTGGGTCTTATCAATGTCCCTCTCCGTTTTTGGCATTCTTTATTCTCTCTATAGATTGATTGGCAAGTGGTTGATGAAGAAAAAAAAAGACGGGCGGTTCGGAGATATTGACAAGTTGATGATTTCGAGAATTTTTAGGTTTTTAGGGTTCAACTTTGAGCTAATTTATCTTGATGCTTGTAAAAGGTATCAAAAAGTTTTCAACTGAATGTTATTCACATTATCAAAAATA</canonical>
            <polymorphic>GATAATTGAGTTGCAAGCATAAAAGTCACAAGCGCTGCCGACCAAATAGCTCGCGCCGACAGATACATACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGATATCAAAAATTTGTCAACTGATAAAATGTTTATCATATTATCAGAAATATTTAATTACTTATCAACTTTTGATATCTTTTACGAGAACCGAGATAAATTGGCTCAAAGAACAATTACGGTTATACTTTCTTCAGAATAAGAGGACCTTGGTCCATAACTCAGTTCTTGTCACCAGGGAATCACCTCTGGCTGGGTACAAACATACTAAAACACACGTGTTGGGCAAATATTGGCATAGGCAAAAGATGTAACGGTTAGGTTGGAAGAGGAGGAGGAGGAGAGAGGAAGGAAGGCTTAGGACTTATGAATCAGGTCAAGGGGTGAGAGAAGGTGACAAGTTTTGCGATGTTTTTGTTGTTGTATTTTTTTGTCAAAACCCAACTTTTCAAAATTTACMATTAACAGTCTCATAGACCCAAAAACATTTTTTTGGCAAGATACCAATCTACAGAATATATTACGAGATCTCAATAAAAAACAAGAATACTCATCCAACACCATTATTTCACCAATTCTTCCCAAATGTTGCCGAAAAAAGAGAAAAGTGACGCTTCTTCATCTTCTGATGATCACTTTTCCTGTTCCTTTCGATTTCCACCCATTCATTCTATTATTTTTCTCTGCTTCTCTAGTTAGCTCTCCGAAAATCCGACACTATTTCTATTTTGGGTCTTATCAATGTCCCTCTCCGTTTTTGGCATTCTTTATTCTCTCTATAGATTGATTGGCAAGTGGTTGATGAAGAAAAAAAAAGACGGGCGGTTCGGAGATATTGACAAGTTGATGATTTCGAGAATTTTTAGGTTTTTAGGGTTCAACTTTGAGCTAATTTATCTTGATGCTTGTAAAAGGTATCAAAAAGTTTTCAACTGAATGTTATTCACATTATCAAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>284 278 114 76 70 45 43 33 31 16 7 3</canonical_bands>
                <polymorphic_bands>284 278 121 76 70 45 43 33 31 16 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAACGGTTAGGTTGGAAGAG</pcr_primer_p1>
		<pcr_primer_p2>TGTTGGATGAGTATTCTTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAACGGTTAGGTTGGAAGAGGAGGAGGAGGAGAGAGGAAGGAAGGCTTAGGACTTATGAATCAGGTCAAGGGGTGAGAGAAGGTGACAAGTTTTGCGATGTTTTTGTTGTTGTATTTTTTTGTCAAAACCCAACTTTTCAAAATTTACAATTAACAGTCTCATAGACCCAAAAACATTTTTTTGGCAAGATACCAATCTACAGAATATATTACGAGATCTCAATAAAAAACAAGAATACTCATCCAACA</canonical_amplicon>
		<polymorphic_amplicon>GTAACGGTTAGGTTGGAAGAGGAGGAGGAGGAGAGAGGAAGGAAGGCTTAGGACTTATGAATCAGGTCAAGGGGTGAGAGAAGGTGACAAGTTTTGCGATGTTTTTGTTGTTGTATTTTTTTGTCAAAACCCAACTTTTCAAAATTTACMATTAACAGTCTCATAGACCCAAAAACATTTTTTTGGCAAGATACCAATCTACAGAATATATTACGAGATCTCAATAAAAAACAAGAATACTCATCCAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15785</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>42526</contig_pos>
        <strand></strand>
        <context>AAAATTTACM[A/C]TTAACAGTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTTTTGTTGTTGTATTTTTTTGTCAAAACCCAACTTTTCAAAATTTACA</left_flank>
        <right_flank>TTAACAGTCTCATAGACCCAAAAACATTTTTTTGGCAAGATACCAATCTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAATTGAGTTGCAAGCATAAAAGTCACAAGCGCTGCCGACCAAATAGCTCGCGCCGACAGATACATACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGATATCAAAAATTTGTCAACTGATAAAATGTTTATCATATTATCAGAAATATTTAATTACTTATCAACTTTTGATATCTTTTACGAGAACCGAGATAAATTGGCTCAAAGAACAATTACGGTTATACTTTCTTCAGAATAAGAGGACCTTGGTCCATAACTCAGTTCTTGTCACCAGGGAATCACCTCTGGCTGGGTACAAACATACTAAAACACACGTGTTGGGCAAATATTGGCATAGGCAAAAGATGTAACGGTTAGGTTGGAAGAGGAGGAGGAGGAGAGAGGAAGGAAGGCTTAGGACTTATGAATCAGGTCAAGGGGTGAGAGAAGGTGACAAGTTTTGCGATGTTTTTGTTGTTGTATTTTTTTGTCAAAACCCAACTTTTCAAAATTTACAATTAACAGTCTCATAGACCCAAAAACATTTTTTTGGCAAGATACCAATCTACAGAATATATTACGAGATCTCAATAAAAAACAAGAATACTCATCCAACACCATTATTTCACCAATTCTTCCCAAATGTTGCCGAAAAAAGAGAAAAGTGACGCTTCTTCATCTTCTGATGATCACTTTTCCTGTTCCTTTCGATTTCCACCCATTCATTCTATTATTTTTCTCTGCTTCTCTAGTTAGCTCTCCGAAAATCCGACACTATTTCTATTTTGGGTCTTATCAATGTCCCTCTCCGTTTTTGGCATTCTTTATTCTCTCTATAGATTGATTGGCAAGTGGTTGATGAAGAAAAAAAAAGACGGGCGGTTCGGAGATATTGACAAGTTGATGATTTCGAGAATTTTTAGGTTTTTAGGGTTCAACTTTGAGCTAATTTATCTTGATGCTTGTAAAAGGTATCAAAAAGTTTTCAACTGAATGTTATTCACATTATCAAAAATAT</canonical>
            <polymorphic>ATAATTGAGTTGCAAGCATAAAAGTCACAAGCGCTGCCGACCAAATAGCTCGCGCCGACAGATACATACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGATATCAAAAATTTGTCAACTGATAAAATGTTTATCATATTATCAGAAATATTTAATTACTTATCAACTTTTGATATCTTTTACGAGAACCGAGATAAATTGGCTCAAAGAACAATTACGGTTATACTTTCTTCAGAATAAGAGGACCTTGGTCCATAACTCAGTTCTTGTCACCAGGGAATCACCTCTGGCTGGGTACAAACATACTAAAACACACGTGTTGGGCAAATATTGGCATAGGCAAAAGATGTAACGGTTAGGTTGGAAGAGGAGGAGGAGGAGAGAGGAAGGAAGGCTTAGGACTTATGAATCAGGTCAAGGGGTGAGAGAAGGTGACAAGTTTTGCGATGTTTTTGTTGTTGTATTTTTTTGTCAAAACCCAACTTTTCAAAATTTACAMTTAACAGTCTCATAGACCCAAAAACATTTTTTTGGCAAGATACCAATCTACAGAATATATTACGAGATCTCAATAAAAAACAAGAATACTCATCCAACACCATTATTTCACCAATTCTTCCCAAATGTTGCCGAAAAAAGAGAAAAGTGACGCTTCTTCATCTTCTGATGATCACTTTTCCTGTTCCTTTCGATTTCCACCCATTCATTCTATTATTTTTCTCTGCTTCTCTAGTTAGCTCTCCGAAAATCCGACACTATTTCTATTTTGGGTCTTATCAATGTCCCTCTCCGTTTTTGGCATTCTTTATTCTCTCTATAGATTGATTGGCAAGTGGTTGATGAAGAAAAAAAAAGACGGGCGGTTCGGAGATATTGACAAGTTGATGATTTCGAGAATTTTTAGGTTTTTAGGGTTCAACTTTGAGCTAATTTATCTTGATGCTTGTAAAAGGTATCAAAAAGTTTTCAACTGAATGTTATTCACATTATCAAAAATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>284 278 114 76 71 45 43 33 31 16 7 2</canonical_bands>
                <polymorphic_bands>284 278 121 76 71 45 43 33 31 16 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAACGGTTAGGTTGGAAGAG</pcr_primer_p1>
		<pcr_primer_p2>TGTTGGATGAGTATTCTTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAACGGTTAGGTTGGAAGAGGAGGAGGAGGAGAGAGGAAGGAAGGCTTAGGACTTATGAATCAGGTCAAGGGGTGAGAGAAGGTGACAAGTTTTGCGATGTTTTTGTTGTTGTATTTTTTTGTCAAAACCCAACTTTTCAAAATTTACAATTAACAGTCTCATAGACCCAAAAACATTTTTTTGGCAAGATACCAATCTACAGAATATATTACGAGATCTCAATAAAAAACAAGAATACTCATCCAACA</canonical_amplicon>
		<polymorphic_amplicon>GTAACGGTTAGGTTGGAAGAGGAGGAGGAGGAGAGAGGAAGGAAGGCTTAGGACTTATGAATCAGGTCAAGGGGTGAGAGAAGGTGACAAGTTTTGCGATGTTTTTGTTGTTGTATTTTTTTGTCAAAACCCAACTTTTCAAAATTTACAMTTAACAGTCTCATAGACCCAAAAACATTTTTTTGGCAAGATACCAATCTACAGAATATATTACGAGATCTCAATAAAAAACAAGAATACTCATCCAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15786</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>42560</contig_pos>
        <strand>+</strand>
        <context>ACATTTTTTT[G/T]GCAAGATACC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTTTCAAAATTTACAATTAACAGTCTCATAGACCCAAAAACATTTTTTT</left_flank>
        <right_flank>GCAAGATACCAATCTACAGAATATATTACGAGATCTCAATAAAAAACAAG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCCGACCAAATAGCTCGCGCCGACAGATACATACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGATATCAAAAATTTGTCAACTGATAAAATGTTTATCATATTATCAGAAATATTTAATTACTTATCAACTTTTGATATCTTTTACGAGAACCGAGATAAATTGGCTCAAAGAACAATTACGGTTATACTTTCTTCAGAATAAGAGGACCTTGGTCCATAACTCAGTTCTTGTCACCAGGGAATCACCTCTGGCTGGGTACAAACATACTAAAACACACGTGTTGGGCAAATATTGGCATAGGCAAAAGATGTAACGGTTAGGTTGGAAGAGGAGGAGGAGGAGAGAGGAAGGAAGGCTTAGGACTTATGAATCAGGTCAAGGGGTGAGAGAAGGTGACAAGTTTTGCGATGTTTTTGTTGTTGTATTTTTTTGTCAAAACCCAACTTTTCAAAATTTACAATTAACAGTCTCATAGACCCAAAAACATTTTTTTGGCAAGATACCAATCTACAGAATATATTACGAGATCTCAATAAAAAACAAGAATACTCATCCAACACCATTATTTCACCAATTCTTCCCAAATGTTGCCGAAAAAAGAGAAAAGTGACGCTTCTTCATCTTCTGATGATCACTTTTCCTGTTCCTTTCGATTTCCACCCATTCATTCTATTATTTTTCTCTGCTTCTCTAGTTAGCTCTCCGAAAATCCGACACTATTTCTATTTTGGGTCTTATCAATGTCCCTCTCCGTTTTTGGCATTCTTTATTCTCTCTATAGATTGATTGGCAAGTGGTTGATGAAGAAAAAAAAAGACGGGCGGTTCGGAGATATTGACAAGTTGATGATTTCGAGAATTTTTAGGTTTTTAGGGTTCAACTTTGAGCTAATTTATCTTGATGCTTGTAAAAGGTATCAAAAAGTTTTCAACTGAATGTTATTCACATTATCAAAAATATTTTTTTCAGTTGACCACTTTTTGATATATTTTAC</canonical>
            <polymorphic>TGCCGACCAAATAGCTCGCGCCGACAGATACATACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGATATCAAAAATTTGTCAACTGATAAAATGTTTATCATATTATCAGAAATATTTAATTACTTATCAACTTTTGATATCTTTTACGAGAACCGAGATAAATTGGCTCAAAGAACAATTACGGTTATACTTTCTTCAGAATAAGAGGACCTTGGTCCATAACTCAGTTCTTGTCACCAGGGAATCACCTCTGGCTGGGTACAAACATACTAAAACACACGTGTTGGGCAAATATTGGCATAGGCAAAAGATGTAACGGTTAGGTTGGAAGAGGAGGAGGAGGAGAGAGGAAGGAAGGCTTAGGACTTATGAATCAGGTCAAGGGGTGAGAGAAGGTGACAAGTTTTGCGATGTTTTTGTTGTTGTATTTTTTTGTCAAAACCCAACTTTTCAAAATTTACAATTAACAGTCTCATAGACCCAAAAACATTTTTTTKGCAAGATACCAATCTACAGAATATATTACGAGATCTCAATAAAAAACAAGAATACTCATCCAACACCATTATTTCACCAATTCTTCCCAAATGTTGCCGAAAAAAGAGAAAAGTGACGCTTCTTCATCTTCTGATGATCACTTTTCCTGTTCCTTTCGATTTCCACCCATTCATTCTATTATTTTTCTCTGCTTCTCTAGTTAGCTCTCCGAAAATCCGACACTATTTCTATTTTGGGTCTTATCAATGTCCCTCTCCGTTTTTGGCATTCTTTATTCTCTCTATAGATTGATTGGCAAGTGGTTGATGAAGAAAAAAAAAGACGGGCGGTTCGGAGATATTGACAAGTTGATGATTTCGAGAATTTTTAGGTTTTTAGGGTTCAACTTTGAGCTAATTTATCTTGATGCTTGTAAAAGGTATCAAAAAGTTTTCAACTGAATGTTATTCACATTATCAAAAATATTTTTTTCAGTTGACCACTTTTTGATATATTTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAACGGTTAGGTTGGAAGAG</pcr_primer_p1>
		<pcr_primer_p2>TGTTGGATGAGTATTCTTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAACGGTTAGGTTGGAAGAGGAGGAGGAGGAGAGAGGAAGGAAGGCTTAGGACTTATGAATCAGGTCAAGGGGTGAGAGAAGGTGACAAGTTTTGCGATGTTTTTGTTGTTGTATTTTTTTGTCAAAACCCAACTTTTCAAAATTTACAATTAACAGTCTCATAGACCCAAAAACATTTTTTTGGCAAGATACCAATCTACAGAATATATTACGAGATCTCAATAAAAAACAAGAATACTCATCCAACA</canonical_amplicon>
		<polymorphic_amplicon>GTAACGGTTAGGTTGGAAGAGGAGGAGGAGGAGAGAGGAAGGAAGGCTTAGGACTTATGAATCAGGTCAAGGGGTGAGAGAAGGTGACAAGTTTTGCGATGTTTTTGTTGTTGTATTTTTTTGTCAAAACCCAACTTTTCAAAATTTACAATTAACAGTCTCATAGACCCAAAAACATTTTTTTKGCAAGATACCAATCTACAGAATATATTACGAGATCTCAATAAAAAACAAGAATACTCATCCAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15787</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>42589</contig_pos>
        <strand>+</strand>
        <context>GAATATATTA[C/T]GAGATCTCAW</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGACCCAAAAACATTTTTTTGGCAAGATACCAATCTACAGAATATATTA</left_flank>
        <right_flank>GAGATCTCAATAAAAAACAAGAATACTCATCCAACACCATTATTTCACCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGATATCAAAAATTTGTCAACTGATAAAATGTTTATCATATTATCAGAAATATTTAATTACTTATCAACTTTTGATATCTTTTACGAGAACCGAGATAAATTGGCTCAAAGAACAATTACGGTTATACTTTCTTCAGAATAAGAGGACCTTGGTCCATAACTCAGTTCTTGTCACCAGGGAATCACCTCTGGCTGGGTACAAACATACTAAAACACACGTGTTGGGCAAATATTGGCATAGGCAAAAGATGTAACGGTTAGGTTGGAAGAGGAGGAGGAGGAGAGAGGAAGGAAGGCTTAGGACTTATGAATCAGGTCAAGGGGTGAGAGAAGGTGACAAGTTTTGCGATGTTTTTGTTGTTGTATTTTTTTGTCAAAACCCAACTTTTCAAAATTTACAATTAACAGTCTCATAGACCCAAAAACATTTTTTTGGCAAGATACCAATCTACAGAATATATTACGAGATCTCAATAAAAAACAAGAATACTCATCCAACACCATTATTTCACCAATTCTTCCCAAATGTTGCCGAAAAAAGAGAAAAGTGACGCTTCTTCATCTTCTGATGATCACTTTTCCTGTTCCTTTCGATTTCCACCCATTCATTCTATTATTTTTCTCTGCTTCTCTAGTTAGCTCTCCGAAAATCCGACACTATTTCTATTTTGGGTCTTATCAATGTCCCTCTCCGTTTTTGGCATTCTTTATTCTCTCTATAGATTGATTGGCAAGTGGTTGATGAAGAAAAAAAAAGACGGGCGGTTCGGAGATATTGACAAGTTGATGATTTCGAGAATTTTTAGGTTTTTAGGGTTCAACTTTGAGCTAATTTATCTTGATGCTTGTAAAAGGTATCAAAAAGTTTTCAACTGAATGTTATTCACATTATCAAAAATATTTTTTTCAGTTGACCACTTTTTGATATATTTTACAGGAAATTAACTATAGGGTATAAAAGTGA</canonical>
            <polymorphic>ACATACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGATATCAAAAATTTGTCAACTGATAAAATGTTTATCATATTATCAGAAATATTTAATTACTTATCAACTTTTGATATCTTTTACGAGAACCGAGATAAATTGGCTCAAAGAACAATTACGGTTATACTTTCTTCAGAATAAGAGGACCTTGGTCCATAACTCAGTTCTTGTCACCAGGGAATCACCTCTGGCTGGGTACAAACATACTAAAACACACGTGTTGGGCAAATATTGGCATAGGCAAAAGATGTAACGGTTAGGTTGGAAGAGGAGGAGGAGGAGAGAGGAAGGAAGGCTTAGGACTTATGAATCAGGTCAAGGGGTGAGAGAAGGTGACAAGTTTTGCGATGTTTTTGTTGTTGTATTTTTTTGTCAAAACCCAACTTTTCAAAATTTACAATTAACAGTCTCATAGACCCAAAAACATTTTTTTGGCAAGATACCAATCTACAGAATATATTAYGAGATCTCAATAAAAAACAAGAATACTCATCCAACACCATTATTTCACCAATTCTTCCCAAATGTTGCCGAAAAAAGAGAAAAGTGACGCTTCTTCATCTTCTGATGATCACTTTTCCTGTTCCTTTCGATTTCCACCCATTCATTCTATTATTTTTCTCTGCTTCTCTAGTTAGCTCTCCGAAAATCCGACACTATTTCTATTTTGGGTCTTATCAATGTCCCTCTCCGTTTTTGGCATTCTTTATTCTCTCTATAGATTGATTGGCAAGTGGTTGATGAAGAAAAAAAAAGACGGGCGGTTCGGAGATATTGACAAGTTGATGATTTCGAGAATTTTTAGGTTTTTAGGGTTCAACTTTGAGCTAATTTATCTTGATGCTTGTAAAAGGTATCAAAAAGTTTTCAACTGAATGTTATTCACATTATCAAAAATATTTTTTTCAGTTGACCACTTTTTGATATATTTTACAGGAAATTAACTATAGGGTATAAAAGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACAGTCTCATAGACCCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GATTTTCGGAGAGCTAACTAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAACAGTCTCATAGACCCAAAAACATTTTTTTGGCAAGATACCAATCTACAGAATATATTACGAGATCTCAATAAAAAACAAGAATACTCATCCAACACCATTATTTCACCAATTCTTCCCAAATGTTGCCGAAAAAAGAGAAAAGTGACGCTTCTTCATCTTCTGATGATCACTTTTCCTGTTCCTTTCGATTTCCACCCATTCATTCTATTATTTTTCTCTGCTTCTCTAGTTAGCTCTCCGAAAATC</canonical_amplicon>
		<polymorphic_amplicon>TAACAGTCTCATAGACCCAAAAACATTTTTTTGGCAAGATACCAATCTACAGAATATATTAYGAGATCTCAATAAAAAACAAGAATACTCATCCAACACCATTATTTCACCAATTCTTCCCAAATGTTGCCGAAAAAAGAGAAAAGTGACGCTTCTTCATCTTCTGATGATCACTTTTCCTGTTCCTTTCGATTTCCACCCATTCATTCTATTATTTTTCTCTGCTTCTCTAGTTAGCTCTCCGAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15788</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>42599</contig_pos>
        <strand>+</strand>
        <context>YGAGATCTCA[A/T]TAAAAAACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACATTTTTTTGGCAAGATACCAATCTACAGAATATATTACGAGATCTCA</left_flank>
        <right_flank>TAAAAAACAAGAATACTCATCCAACACCATTATTTCACCAATTCTTCCCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTTAATTATCTTGGTTCCTATAAGAGATATCAAAAATTTGTCAACTGATAAAATGTTTATCATATTATCAGAAATATTTAATTACTTATCAACTTTTGATATCTTTTACGAGAACCGAGATAAATTGGCTCAAAGAACAATTACGGTTATACTTTCTTCAGAATAAGAGGACCTTGGTCCATAACTCAGTTCTTGTCACCAGGGAATCACCTCTGGCTGGGTACAAACATACTAAAACACACGTGTTGGGCAAATATTGGCATAGGCAAAAGATGTAACGGTTAGGTTGGAAGAGGAGGAGGAGGAGAGAGGAAGGAAGGCTTAGGACTTATGAATCAGGTCAAGGGGTGAGAGAAGGTGACAAGTTTTGCGATGTTTTTGTTGTTGTATTTTTTTGTCAAAACCCAACTTTTCAAAATTTACAATTAACAGTCTCATAGACCCAAAAACATTTTTTTGGCAAGATACCAATCTACAGAATATATTACGAGATCTCAATAAAAAACAAGAATACTCATCCAACACCATTATTTCACCAATTCTTCCCAAATGTTGCCGAAAAAAGAGAAAAGTGACGCTTCTTCATCTTCTGATGATCACTTTTCCTGTTCCTTTCGATTTCCACCCATTCATTCTATTATTTTTCTCTGCTTCTCTAGTTAGCTCTCCGAAAATCCGACACTATTTCTATTTTGGGTCTTATCAATGTCCCTCTCCGTTTTTGGCATTCTTTATTCTCTCTATAGATTGATTGGCAAGTGGTTGATGAAGAAAAAAAAAGACGGGCGGTTCGGAGATATTGACAAGTTGATGATTTCGAGAATTTTTAGGTTTTTAGGGTTCAACTTTGAGCTAATTTATCTTGATGCTTGTAAAAGGTATCAAAAAGTTTTCAACTGAATGTTATTCACATTATCAAAAATATTTTTTTCAGTTGACCACTTTTTGATATATTTTACAGGAAATTAACTATAGGGTATAAAAGTGAAGTGGGTTAT</canonical>
            <polymorphic>AGCTTAATTATCTTGGTTCCTATAAGAGATATCAAAAATTTGTCAACTGATAAAATGTTTATCATATTATCAGAAATATTTAATTACTTATCAACTTTTGATATCTTTTACGAGAACCGAGATAAATTGGCTCAAAGAACAATTACGGTTATACTTTCTTCAGAATAAGAGGACCTTGGTCCATAACTCAGTTCTTGTCACCAGGGAATCACCTCTGGCTGGGTACAAACATACTAAAACACACGTGTTGGGCAAATATTGGCATAGGCAAAAGATGTAACGGTTAGGTTGGAAGAGGAGGAGGAGGAGAGAGGAAGGAAGGCTTAGGACTTATGAATCAGGTCAAGGGGTGAGAGAAGGTGACAAGTTTTGCGATGTTTTTGTTGTTGTATTTTTTTGTCAAAACCCAACTTTTCAAAATTTACAATTAACAGTCTCATAGACCCAAAAACATTTTTTTGGCAAGATACCAATCTACAGAATATATTACGAGATCTCAWTAAAAAACAAGAATACTCATCCAACACCATTATTTCACCAATTCTTCCCAAATGTTGCCGAAAAAAGAGAAAAGTGACGCTTCTTCATCTTCTGATGATCACTTTTCCTGTTCCTTTCGATTTCCACCCATTCATTCTATTATTTTTCTCTGCTTCTCTAGTTAGCTCTCCGAAAATCCGACACTATTTCTATTTTGGGTCTTATCAATGTCCCTCTCCGTTTTTGGCATTCTTTATTCTCTCTATAGATTGATTGGCAAGTGGTTGATGAAGAAAAAAAAAGACGGGCGGTTCGGAGATATTGACAAGTTGATGATTTCGAGAATTTTTAGGTTTTTAGGGTTCAACTTTGAGCTAATTTATCTTGATGCTTGTAAAAGGTATCAAAAAGTTTTCAACTGAATGTTATTCACATTATCAAAAATATTTTTTTCAGTTGACCACTTTTTGATATATTTTACAGGAAATTAACTATAGGGTATAAAAGTGAAGTGGGTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACAGTCTCATAGACCCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GATTTTCGGAGAGCTAACTAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAACAGTCTCATAGACCCAAAAACATTTTTTTGGCAAGATACCAATCTACAGAATATATTACGAGATCTCAATAAAAAACAAGAATACTCATCCAACACCATTATTTCACCAATTCTTCCCAAATGTTGCCGAAAAAAGAGAAAAGTGACGCTTCTTCATCTTCTGATGATCACTTTTCCTGTTCCTTTCGATTTCCACCCATTCATTCTATTATTTTTCTCTGCTTCTCTAGTTAGCTCTCCGAAAATC</canonical_amplicon>
		<polymorphic_amplicon>TAACAGTCTCATAGACCCAAAAACATTTTTTTGGCAAGATACCAATCTACAGAATATATTACGAGATCTCAWTAAAAAACAAGAATACTCATCCAACACCATTATTTCACCAATTCTTCCCAAATGTTGCCGAAAAAAGAGAAAAGTGACGCTTCTTCATCTTCTGATGATCACTTTTCCTGTTCCTTTCGATTTCCACCCATTCATTCTATTATTTTTCTCTGCTTCTCTAGTTAGCTCTCCGAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15789</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>43967</contig_pos>
        <strand></strand>
        <context>TTTTTCGGGT[T/A]GAATCTTCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TAAAAAATGGGAAACCTGAATCATAAAGTCAGAATTATTTTTTTTCGGGT</left_flank>
        <right_flank>GAATCTTCAGGAAACTTATTTGAAGGAGTTCGGAAATTCATAATGTGGGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTAGAAAAACCAAGAAAACCTCGGAAGTCATTTTATGAAAGAATTGAAAATCGAGCACTTTTGTGATAAGTTTCAGTAGAAATCGGCTCCGAACAATGAAGTGCCAGCCTCTAATTGAATGCCACCCCCTAATACAGTGCCACCCCAGACCACCTTCGAACAATAGAAAACCATGGCTATCTAATAGAGTTTTTACGGTATTATAAAAAATTCAAGAAATCGCCTCTTTGAAAATATTTGCCGACTTTTAGCCGAAATTTTTAAAACTAACGGTCAAGCAACTTCAAAAAAAAAGTTTTTTTTTCCGGAAAAAAAGAATGTTGCCTTATCATCATAGAGGGAAAAAAATGAATGAAACTGATAGAGGAATGGAATGTTTGTACGTTTTTTTTTTCGAAAAAAAAGGAGGAGAGACGAGGTGAGAAAAAACTGTGCAATGGGAAAATATAAAAAATGGGAAACCTGAATCATAAAGTCAGAATTATTTTTTTTCGGGTTGAATCTTCAGGAAACTTATTTGAAGGAGTTCGGAAATTCATAATGTGGGATTCATACTTTACGAAACTTTCCAATTTTTTAAAAATAAAAGTTTTCAAATTTGTGAAATCATCGAAAGGTGAAATTTCTAGAAAAAAGTATTAAAAATTTTATAATTTCCATTAAAAATGAAGAGAGAGAGAGAGGACATTTTACAAGTGCTAGTGGTGGAAATGAAAGAAAACTGATGATGATGGTATGATGATAAGGAGATAGTGTGTGTGATATGGAGAGAGAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAAAATGAAAATTTGAAGGCTGAAGGAGAAAACAAGTACACGAGGGACAGGACAAGAACAGTTGGGAGGAAGGAAATCGGGAGGATATGGTTAGCAGATGGACAGTGAAAGATATGGATCTGATTGGAATCTCTGGGTGGGTAGATCAACTTTCTTCTGTTGGCCATAAGAGTAGGGGGAGGAAAAAGAATA</canonical>
            <polymorphic>AAGTAGAAAAACCAAGAAAACCTCGGAAGTCATTTTATGAAAGAATTGAAAATCGAGCACTTTTGTGATAAGTTTCAGTAGAAATCGGCTCCGAACAATGAAGTGCCAGCCTCTAATTGAATGCCACCCCCTAATACAGTGCCACCCCAGACCACCTTCGAACAATAGAAAACCATGGCTATCTAATAGAGTTTTTACGGTATTATAAAAAATTCAAGAAATCGCCTCTTTGAAAATATTTGCCGACTTTTAGCCGAAATTTTTAAAACTAACGGTCAAGCAACTTCAAAAAAAAAGTTTTTTTTTCCGGAAAAAAAGAATGTTGCCTTATCATCATAGAGGGAAAAAAATGAATGAAACTGATAGAGGAATGGAATGTTTGTACGTTTTTTTTTTCGAAAAAAAAGGAGGAGAGACGAGGTGAGAAAAAACTGTGCAATGGGAAAATATAAAAAATGGGAAACCTGAATCATAAAGTCAGAATTATTTTTTTTCGGGTWGAATCTTCAGGAAACTTATTTGAAGGAGTTCGGAAATTCATAATGTGGGATTCATACTTTACGAAACTTTCCAATTTTTTAAAAATAAAAGTTTTCAAATTTGTGAAATCATCGAAAGGTGAAATTTCTAGAAAAAAGTATTAAAAATTTTATAATTTCCATTAAAAATGAAGAGAGAGAGAGAGGACATTTTACAAGTGCTAGTGGTGGAAATGAAAGAAAACTGATGATGATGGTATGATGATAAGGAGATAGTGTGTGTGATATGGAGAGAGAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAAAATGAAAATTTGAAGGCTGAAGGAGAAAACAAGTACACGAGGGACAGGACAAGAACAGTTGGGAGGAAGGAAATCGGGAGGATATGGTTAGCAGATGGACAGTGAAAGATATGGATCTGATTGGAATCTCTGGGTGGGTAGATCAACTTTCTTCTGTTGGCCATAAGAGTAGGGGGAGGAAAAAGAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTATCATCATAGAGGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGGAAAGTTTCGTAAAGTATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTTATCATCATAGAGGGAAAAAAATGAATGAAACTGATAGAGGAATGGAATGTTTGTACGTTTTTTTTTTCGAAAAAAAAGGAGGAGAGACGAGGTGAGAAAAAACTGTGCAATGGGAAAATATAAAAAATGGGAAACCTGAATCATAAAGTCAGAATTATTTTTTTTCGGGTTGAATCTTCAGGAAACTTATTTGAAGGAGTTCGGAAATTCATAATGTGGGATTCATACTTTACGAAACTTTCCAAT</canonical_amplicon>
		<polymorphic_amplicon>CCTTATCATCATAGAGGGAAAAAAATGAATGAAACTGATAGAGGAATGGAATGTTTGTACGTTTTTTTTTTCGAAAAAAAAGGAGGAGAGACGAGGTGAGAAAAAACTGTGCAATGGGAAAATATAAAAAATGGGAAACCTGAATCATAAAGTCAGAATTATTTTTTTTCGGGTWGAATCTTCAGGAAACTTATTTGAAGGAGTTCGGAAATTCATAATGTGGGATTCATACTTTACGAAACTTTCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15792</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>43835</contig_pos>
        <strand>+</strand>
        <context>AACTGATAGA[A/G]GAATGGAATG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATGTTGCCTTATCATCATAGAGGGAAAAAAATGAATGAAACTGATAGA</left_flank>
        <right_flank>GAATGGAATGTTTGTACGTTTTTTTTTTCGAAAAAAAAGGAGGAGAGACG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTGGTAAAAGTTAAAGCATAACACAAAGAATAATTTTCTGGTTTTCTTGTTTTTTTCAAGTTTAAAAGAGGTACTGTATTCGTAAAAAATGTGTCGGGATAATATCAAATTCCGAAAGTTTCTAAAAAATAAGTAGAAAAACCAAGAAAACCTCGGAAGTCATTTTATGAAAGAATTGAAAATCGAGCACTTTTGTGATAAGTTTCAGTAGAAATCGGCTCCGAACAATGAAGTGCCAGCCTCTAATTGAATGCCACCCCCTAATACAGTGCCACCCCAGACCACCTTCGAACAATAGAAAACCATGGCTATCTAATAGAGTTTTTACGGTATTATAAAAAATTCAAGAAATCGCCTCTTTGAAAATATTTGCCGACTTTTAGCCGAAATTTTTAAAACTAACGGTCAAGCAACTTCAAAAAAAAAGTTTTTTTTTCCGGAAAAAAAGAATGTTGCCTTATCATCATAGAGGGAAAAAAATGAATGAAACTGATAGAGGAATGGAATGTTTGTACGTTTTTTTTTTCGAAAAAAAAGGAGGAGAGACGAGGTGAGAAAAAACTGTGCAATGGGAAAATATAAAAAATGGGAAACCTGAATCATAAAGTCAGAATTATTTTTTTTCGGGTTGAATCTTCAGGAAACTTATTTGAAGGAGTTCGGAAATTCATAATGTGGGATTCATACTTTACGAAACTTTCCAATTTTTTAAAAATAAAAGTTTTCAAATTTGTGAAATCATCGAAAGGTGAAATTTCTAGAAAAAAGTATTAAAAATTTTATAATTTCCATTAAAAATGAAGAGAGAGAGAGAGGACATTTTACAAGTGCTAGTGGTGGAAATGAAAGAAAACTGATGATGATGGTATGATGATAAGGAGATAGTGTGTGTGATATGGAGAGAGAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAAAATGAAAATTTGAAGGCTGAAGGAGAAAACAAGTACACGAGGGACAGGACAAGAACA</canonical>
            <polymorphic>CTGTGGTAAAAGTTAAAGCATAACACAAAGAATAATTTTCTGGTTTTCTTGTTTTTTTCAAGTTTAAAAGAGGTACTGTATTCGTAAAAAATGTGTCGGGATAATATCAAATTCCGAAAGTTTCTAAAAAATAAGTAGAAAAACCAAGAAAACCTCGGAAGTCATTTTATGAAAGAATTGAAAATCGAGCACTTTTGTGATAAGTTTCAGTAGAAATCGGCTCCGAACAATGAAGTGCCAGCCTCTAATTGAATGCCACCCCCTAATACAGTGCCACCCCAGACCACCTTCGAACAATAGAAAACCATGGCTATCTAATAGAGTTTTTACGGTATTATAAAAAATTCAAGAAATCGCCTCTTTGAAAATATTTGCCGACTTTTAGCCGAAATTTTTAAAACTAACGGTCAAGCAACTTCAAAAAAAAAGTTTTTTTTTCCGGAAAAAAAGAATGTTGCCTTATCATCATAGAGGGAAAAAAATGAATGAAACTGATAGARGAATGGAATGTTTGTACGTTTTTTTTTTCGAAAAAAAAGGAGGAGAGACGAGGTGAGAAAAAACTGTGCAATGGGAAAATATAAAAAATGGGAAACCTGAATCATAAAGTCAGAATTATTTTTTTTCGGGTTGAATCTTCAGGAAACTTATTTGAAGGAGTTCGGAAATTCATAATGTGGGATTCATACTTTACGAAACTTTCCAATTTTTTAAAAATAAAAGTTTTCAAATTTGTGAAATCATCGAAAGGTGAAATTTCTAGAAAAAAGTATTAAAAATTTTATAATTTCCATTAAAAATGAAGAGAGAGAGAGAGGACATTTTACAAGTGCTAGTGGTGGAAATGAAAGAAAACTGATGATGATGGTATGATGATAAGGAGATAGTGTGTGTGATATGGAGAGAGAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAAAATGAAAATTTGAAGGCTGAAGGAGAAAACAAGTACACGAGGGACAGGACAAGAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAATGTTGCCTTATCATC</pcr_primer_p1>
		<pcr_primer_p2>TCGTAAAGTATGAATCCCACAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAATGTTGCCTTATCATCATAGAGGGAAAAAAATGAATGAAACTGATAGAGGAATGGAATGTTTGTACGTTTTTTTTTTCGAAAAAAAAGGAGGAGAGACGAGGTGAGAAAAAACTGTGCAATGGGAAAATATAAAAAATGGGAAACCTGAATCATAAAGTCAGAATTATTTTTTTTCGGGTTGAATCTTCAGGAAACTTATTTGAAGGAGTTCGGAAATTCATAATGTGGGATTCATACTTTACGA</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAATGTTGCCTTATCATCATAGAGGGAAAAAAATGAATGAAACTGATAGARGAATGGAATGTTTGTACGTTTTTTTTTTCGAAAAAAAAGGAGGAGAGACGAGGTGAGAAAAAACTGTGCAATGGGAAAATATAAAAAATGGGAAACCTGAATCATAAAGTCAGAATTATTTTTTTTCGGGTTGAATCTTCAGGAAACTTATTTGAAGGAGTTCGGAAATTCATAATGTGGGATTCATACTTTACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15793</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>77428</contig_pos>
        <strand></strand>
        <context>AACTGTATAG[C/T]TAGATTAAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAG</left_flank>
        <right_flank>TAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACATTCGCAGACCAAAAGCTCTTGTCTTCGCCTTGCGTGAGCGTCGGTATGCTAGACTACAAACTACAAAAATAAGAATTAGCAGACCCAAATCATATCACGCATAGAGTCGTCAATTTGATCTGCTTGACTACAAACTACAAGGCAAACAATAGCAGACCCAAACCACTGGTCGCCGCCTGACGTTAGCTTTGGTATGCTAGACTACAAACTACAAAGTAAGGACTAGTAGACCCACACCACTGGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCCAAAAAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTCAAATGATGCTTCTGACCTTTTGGTATTTTCAGAAGATGCCACGTCATCTAGATTCTATGCAAAATAAATTCTCAGAAACCTAAATTTTCCAGTAAAACATCAACCTTCTCGGGTGACTTTTCTCTTTCAGTAAACCTCTTAAGAAAATTGAGAAAATTGAAGAAGGGGGGGGGGGGGGGGCAAAAAGAGGCCGAGGAATGAGAAAATGAGAAATTGGAGGAATAGGGTAGAAGAGCCGACTAAAAAAAGAACCATGTAATTTCCGGACGGACGGAGCAAAAGTCTTAGATTCCGTGAAGTAATGGGTACCCGCCTATTACGAAGCGGCGAAGGAG</canonical>
            <polymorphic>CAACATTCGCAGACCAAAAGCTCTTGTCTTCGCCTTGCGTGAGCGTCGGTATGCTAGACTACAAACTACAAAAATAAGAATTAGCAGACCCAAATCATATCACGCATAGAGTCGTCAATTTGATCTGCTTGACTACAAACTACAAGGCAAACAATAGCAGACCCAAACCACTGGTCGCCGCCTGACGTTAGCTTTGGTATGCTAGACTACAAACTACAAAGTAAGGACTAGTAGACCCACACCACTGGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCCAAAAAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGYTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTCAAATGATGCTTCTGACCTTTTGGTATTTTCAGAAGATGCCACGTCATCTAGATTCTATGCAAAATAAATTCTCAGAAACCTAAATTTTCCAGTAAAACATCAACCTTCTCGGGTGACTTTTCTCTTTCAGTAAACCTCTTAAGAAAATTGAGAAAATTGAAGAAGGGGGGGGGGGGGGGGCAAAAAGAGGCCGAGGAATGAGAAAATGAGAAATTGGAGGAATAGGGTAGAAGAGCCGACTAAAAAAAGAACCATGTAATTTCCGGACGGACGGAGCAAAAGTCTTAGATTCCGTGAAGTAATGGGTACCCGCCTATTACGAAGCGGCGAAGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>501 308 171 20</canonical_bands>
                <polymorphic_bands>809 171 20</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>287 193 149 148 75 54 48 26 20</canonical_bands>
                <polymorphic_bands>287 193 169 148 75 54 48 26</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>356 234 171 100 74 45 20</canonical_bands>
                <polymorphic_bands>590 171 100 74 45 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTCAAAATCCGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCTGGAAATTCCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGYTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15794</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>77447</contig_pos>
        <strand></strand>
        <context>ACCTTGGGTT[T/G]CTAGACTACA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTT</left_flank>
        <right_flank>CTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTCTTGTCTTCGCCTTGCGTGAGCGTCGGTATGCTAGACTACAAACTACAAAAATAAGAATTAGCAGACCCAAATCATATCACGCATAGAGTCGTCAATTTGATCTGCTTGACTACAAACTACAAGGCAAACAATAGCAGACCCAAACCACTGGTCGCCGCCTGACGTTAGCTTTGGTATGCTAGACTACAAACTACAAAGTAAGGACTAGTAGACCCACACCACTGGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCCAAAAAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTCAAATGATGCTTCTGACCTTTTGGTATTTTCAGAAGATGCCACGTCATCTAGATTCTATGCAAAATAAATTCTCAGAAACCTAAATTTTCCAGTAAAACATCAACCTTCTCGGGTGACTTTTCTCTTTCAGTAAACCTCTTAAGAAAATTGAGAAAATTGAAGAAGGGGGGGGGGGGGGGGCAAAAAGAGGCCGAGGAATGAGAAAATGAGAAATTGGAGGAATAGGGTAGAAGAGCCGACTAAAAAAAGAACCATGTAATTTCCGGACGGACGGAGCAAAAGTCTTAGATTCCGTGAAGTAATGGGTACCCGCCTATTACGAAGCGGCGAAGGAGGAAATTTGCTCTGTATAGT</canonical>
            <polymorphic>GCTCTTGTCTTCGCCTTGCGTGAGCGTCGGTATGCTAGACTACAAACTACAAAAATAAGAATTAGCAGACCCAAATCATATCACGCATAGAGTCGTCAATTTGATCTGCTTGACTACAAACTACAAGGCAAACAATAGCAGACCCAAACCACTGGTCGCCGCCTGACGTTAGCTTTGGTATGCTAGACTACAAACTACAAAGTAAGGACTAGTAGACCCACACCACTGGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCCAAAAAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTKCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTCAAATGATGCTTCTGACCTTTTGGTATTTTCAGAAGATGCCACGTCATCTAGATTCTATGCAAAATAAATTCTCAGAAACCTAAATTTTCCAGTAAAACATCAACCTTCTCGGGTGACTTTTCTCTTTCAGTAAACCTCTTAAGAAAATTGAGAAAATTGAAGAAGGGGGGGGGGGGGGGGCAAAAAGAGGCCGAGGAATGAGAAAATGAGAAATTGGAGGAATAGGGTAGAAGAGCCGACTAAAAAAAGAACCATGTAATTTCCGGACGGACGGAGCAAAAGTCTTAGATTCCGTGAAGTAATGGGTACCCGCCTATTACGAAGCGGCGAAGGAGGAAATTTGCTCTGTATAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>435 215 99 91 66 57 37</canonical_bands>
                <polymorphic_bands>435 215 103 99 91 57</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 307 193</canonical_bands>
                <polymorphic_bands>693 307</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTCAAAATCCGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCTGGAAATTCCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTKCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15795</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>77466</contig_pos>
        <strand>+</strand>
        <context>CAAACTACAA[A/G]AATGAGTGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAA</left_flank>
        <right_flank>AATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGAGCGTCGGTATGCTAGACTACAAACTACAAAAATAAGAATTAGCAGACCCAAATCATATCACGCATAGAGTCGTCAATTTGATCTGCTTGACTACAAACTACAAGGCAAACAATAGCAGACCCAAACCACTGGTCGCCGCCTGACGTTAGCTTTGGTATGCTAGACTACAAACTACAAAGTAAGGACTAGTAGACCCACACCACTGGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCCAAAAAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTCAAATGATGCTTCTGACCTTTTGGTATTTTCAGAAGATGCCACGTCATCTAGATTCTATGCAAAATAAATTCTCAGAAACCTAAATTTTCCAGTAAAACATCAACCTTCTCGGGTGACTTTTCTCTTTCAGTAAACCTCTTAAGAAAATTGAGAAAATTGAAGAAGGGGGGGGGGGGGGGGCAAAAAGAGGCCGAGGAATGAGAAAATGAGAAATTGGAGGAATAGGGTAGAAGAGCCGACTAAAAAAAGAACCATGTAATTTCCGGACGGACGGAGCAAAAGTCTTAGATTCCGTGAAGTAATGGGTACCCGCCTATTACGAAGCGGCGAAGGAGGAAATTTGCTCTGTATAGTTTTGTTTATAGGATATCTG</canonical>
            <polymorphic>GTGAGCGTCGGTATGCTAGACTACAAACTACAAAAATAAGAATTAGCAGACCCAAATCATATCACGCATAGAGTCGTCAATTTGATCTGCTTGACTACAAACTACAAGGCAAACAATAGCAGACCCAAACCACTGGTCGCCGCCTGACGTTAGCTTTGGTATGCTAGACTACAAACTACAAAGTAAGGACTAGTAGACCCACACCACTGGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCCAAAAAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAARAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTCAAATGATGCTTCTGACCTTTTGGTATTTTCAGAAGATGCCACGTCATCTAGATTCTATGCAAAATAAATTCTCAGAAACCTAAATTTTCCAGTAAAACATCAACCTTCTCGGGTGACTTTTCTCTTTCAGTAAACCTCTTAAGAAAATTGAGAAAATTGAAGAAGGGGGGGGGGGGGGGGCAAAAAGAGGCCGAGGAATGAGAAAATGAGAAATTGGAGGAATAGGGTAGAAGAGCCGACTAAAAAAAGAACCATGTAATTTCCGGACGGACGGAGCAAAAGTCTTAGATTCCGTGAAGTAATGGGTACCCGCCTATTACGAAGCGGCGAAGGAGGAAATTTGCTCTGTATAGTTTTGTTTATAGGATATCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTCAAAATCCGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCTGGAAATTCCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAARAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15796</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>77514</contig_pos>
        <strand></strand>
        <context>GATGTACAAT[G/A]GCACTAACGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAAT</left_flank>
        <right_flank>GCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACCCAAATCATATCACGCATAGAGTCGTCAATTTGATCTGCTTGACTACAAACTACAAGGCAAACAATAGCAGACCCAAACCACTGGTCGCCGCCTGACGTTAGCTTTGGTATGCTAGACTACAAACTACAAAGTAAGGACTAGTAGACCCACACCACTGGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCCAAAAAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTCAAATGATGCTTCTGACCTTTTGGTATTTTCAGAAGATGCCACGTCATCTAGATTCTATGCAAAATAAATTCTCAGAAACCTAAATTTTCCAGTAAAACATCAACCTTCTCGGGTGACTTTTCTCTTTCAGTAAACCTCTTAAGAAAATTGAGAAAATTGAAGAAGGGGGGGGGGGGGGGGCAAAAAGAGGCCGAGGAATGAGAAAATGAGAAATTGGAGGAATAGGGTAGAAGAGCCGACTAAAAAAAGAACCATGTAATTTCCGGACGGACGGAGCAAAAGTCTTAGATTCCGTGAAGTAATGGGTACCCGCCTATTACGAAGCGGCGAAGGAGGAAATTTGCTCTGTATAGTTTTGTTTATAGGATATCTGGAGGTCTGCTGGACTACAAACTACAAAATAAACATTAGCAGACCCTTT</canonical>
            <polymorphic>GACCCAAATCATATCACGCATAGAGTCGTCAATTTGATCTGCTTGACTACAAACTACAAGGCAAACAATAGCAGACCCAAACCACTGGTCGCCGCCTGACGTTAGCTTTGGTATGCTAGACTACAAACTACAAAGTAAGGACTAGTAGACCCACACCACTGGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCCAAAAAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATRGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTCAAATGATGCTTCTGACCTTTTGGTATTTTCAGAAGATGCCACGTCATCTAGATTCTATGCAAAATAAATTCTCAGAAACCTAAATTTTCCAGTAAAACATCAACCTTCTCGGGTGACTTTTCTCTTTCAGTAAACCTCTTAAGAAAATTGAGAAAATTGAAGAAGGGGGGGGGGGGGGGGCAAAAAGAGGCCGAGGAATGAGAAAATGAGAAATTGGAGGAATAGGGTAGAAGAGCCGACTAAAAAAAGAACCATGTAATTTCCGGACGGACGGAGCAAAAGTCTTAGATTCCGTGAAGTAATGGGTACCCGCCTATTACGAAGCGGCGAAGGAGGAAATTTGCTCTGTATAGTTTTGTTTATAGGATATCTGGAGGTCTGCTGGACTACAAACTACAAAATAAACATTAGCAGACCCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTCAAAATCCGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCTGGAAATTCCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATRGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15797</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>77650</contig_pos>
        <strand>+</strand>
        <context>TCTAGATTCT[A/C]WGCAAAATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCTTCTGACCTTTTGGTATTTTCAGAAGATGCCACGTCATCTAGATTCT</left_flank>
        <right_flank>TGCAAAATAAATTCTCAGAAACCTAAATTTTCCAGTAAAACATCAACCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGACTAGTAGACCCACACCACTGGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCCAAAAAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTCAAATGATGCTTCTGACCTTTTGGTATTTTCAGAAGATGCCACGTCATCTAGATTCTATGCAAAATAAATTCTCAGAAACCTAAATTTTCCAGTAAAACATCAACCTTCTCGGGTGACTTTTCTCTTTCAGTAAACCTCTTAAGAAAATTGAGAAAATTGAAGAAGGGGGGGGGGGGGGGGCAAAAAGAGGCCGAGGAATGAGAAAATGAGAAATTGGAGGAATAGGGTAGAAGAGCCGACTAAAAAAAGAACCATGTAATTTCCGGACGGACGGAGCAAAAGTCTTAGATTCCGTGAAGTAATGGGTACCCGCCTATTACGAAGCGGCGAAGGAGGAAATTTGCTCTGTATAGTTTTGTTTATAGGATATCTGGAGGTCTGCTGGACTACAAACTACAAAATAAACATTAGCAGACCCTTTGCTCTGCCACCCTTTGCTCTGAATTCTGAAAACGCAGTTTTCTGGAATTCTCACGTCGTTAACTTTCTTTTCTATGAGATTTCCGATATGTTGATACCCATATTGCCCTAGTCCGAAGAATTTTCAATTCTGAGAA</canonical>
            <polymorphic>AAGGACTAGTAGACCCACACCACTGGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCCAAAAAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTCAAATGATGCTTCTGACCTTTTGGTATTTTCAGAAGATGCCACGTCATCTAGATTCTMTGCAAAATAAATTCTCAGAAACCTAAATTTTCCAGTAAAACATCAACCTTCTCGGGTGACTTTTCTCTTTCAGTAAACCTCTTAAGAAAATTGAGAAAATTGAAGAAGGGGGGGGGGGGGGGGCAAAAAGAGGCCGAGGAATGAGAAAATGAGAAATTGGAGGAATAGGGTAGAAGAGCCGACTAAAAAAAGAACCATGTAATTTCCGGACGGACGGAGCAAAAGTCTTAGATTCCGTGAAGTAATGGGTACCCGCCTATTACGAAGCGGCGAAGGAGGAAATTTGCTCTGTATAGTTTTGTTTATAGGATATCTGGAGGTCTGCTGGACTACAAACTACAAAATAAACATTAGCAGACCCTTTGCTCTGCCACCCTTTGCTCTGAATTCTGAAAACGCAGTTTTCTGGAATTCTCACGTCGTTAACTTTCTTTTCTATGAGATTTCCGATATGTTGATACCCATATTGCCCTAGTCCGAAGAATTTTCAATTCTGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGAAGGAATTTCCAGAAT</pcr_primer_p1>
		<pcr_primer_p2>CTCCAATTTCTCATTTTCTCAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGAAGGAATTTCCAGAATTTCAAATGATGCTTCTGACCTTTTGGTATTTTCAGAAGATGCCACGTCATCTAGATTCTATGCAAAATAAATTCTCAGAAACCTAAATTTTCCAGTAAAACATCAACCTTCTCGGGTGACTTTTCTCTTTCAGTAAACCTCTTAAGAAAATTGAGAAAATTGAAGAAGGGGGGGGGGGGGGGGCAAAAAGAGGCCGAGGAATGAGAAAATGAGAAATTGGAG</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGAAGGAATTTCCAGAATTTCAAATGATGCTTCTGACCTTTTGGTATTTTCAGAAGATGCCACGTCATCTAGATTCTMTGCAAAATAAATTCTCAGAAACCTAAATTTTCCAGTAAAACATCAACCTTCTCGGGTGACTTTTCTCTTTCAGTAAACCTCTTAAGAAAATTGAGAAAATTGAAGAAGGGGGGGGGGGGGGGGCAAAAAGAGGCCGAGGAATGAGAAAATGAGAAATTGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15798</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>77651</contig_pos>
        <strand>+</strand>
        <context>CTAGATTCTM[A/T]GCAAAATAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTTCTGACCTTTTGGTATTTTCAGAAGATGCCACGTCATCTAGATTCTA</left_flank>
        <right_flank>GCAAAATAAATTCTCAGAAACCTAAATTTTCCAGTAAAACATCAACCTTC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGACTAGTAGACCCACACCACTGGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCCAAAAAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTCAAATGATGCTTCTGACCTTTTGGTATTTTCAGAAGATGCCACGTCATCTAGATTCTATGCAAAATAAATTCTCAGAAACCTAAATTTTCCAGTAAAACATCAACCTTCTCGGGTGACTTTTCTCTTTCAGTAAACCTCTTAAGAAAATTGAGAAAATTGAAGAAGGGGGGGGGGGGGGGGCAAAAAGAGGCCGAGGAATGAGAAAATGAGAAATTGGAGGAATAGGGTAGAAGAGCCGACTAAAAAAAGAACCATGTAATTTCCGGACGGACGGAGCAAAAGTCTTAGATTCCGTGAAGTAATGGGTACCCGCCTATTACGAAGCGGCGAAGGAGGAAATTTGCTCTGTATAGTTTTGTTTATAGGATATCTGGAGGTCTGCTGGACTACAAACTACAAAATAAACATTAGCAGACCCTTTGCTCTGCCACCCTTTGCTCTGAATTCTGAAAACGCAGTTTTCTGGAATTCTCACGTCGTTAACTTTCTTTTCTATGAGATTTCCGATATGTTGATACCCATATTGCCCTAGTCCGAAGAATTTTCAATTCTGAGAAT</canonical>
            <polymorphic>AGGACTAGTAGACCCACACCACTGGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCCAAAAAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTCAAATGATGCTTCTGACCTTTTGGTATTTTCAGAAGATGCCACGTCATCTAGATTCTAWGCAAAATAAATTCTCAGAAACCTAAATTTTCCAGTAAAACATCAACCTTCTCGGGTGACTTTTCTCTTTCAGTAAACCTCTTAAGAAAATTGAGAAAATTGAAGAAGGGGGGGGGGGGGGGGCAAAAAGAGGCCGAGGAATGAGAAAATGAGAAATTGGAGGAATAGGGTAGAAGAGCCGACTAAAAAAAGAACCATGTAATTTCCGGACGGACGGAGCAAAAGTCTTAGATTCCGTGAAGTAATGGGTACCCGCCTATTACGAAGCGGCGAAGGAGGAAATTTGCTCTGTATAGTTTTGTTTATAGGATATCTGGAGGTCTGCTGGACTACAAACTACAAAATAAACATTAGCAGACCCTTTGCTCTGCCACCCTTTGCTCTGAATTCTGAAAACGCAGTTTTCTGGAATTCTCACGTCGTTAACTTTCTTTTCTATGAGATTTCCGATATGTTGATACCCATATTGCCCTAGTCCGAAGAATTTTCAATTCTGAGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>499 448 53</canonical_bands>
                <polymorphic_bands>947 53</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGAAGGAATTTCCAGAAT</pcr_primer_p1>
		<pcr_primer_p2>CTCCAATTTCTCATTTTCTCAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGAAGGAATTTCCAGAATTTCAAATGATGCTTCTGACCTTTTGGTATTTTCAGAAGATGCCACGTCATCTAGATTCTATGCAAAATAAATTCTCAGAAACCTAAATTTTCCAGTAAAACATCAACCTTCTCGGGTGACTTTTCTCTTTCAGTAAACCTCTTAAGAAAATTGAGAAAATTGAAGAAGGGGGGGGGGGGGGGGCAAAAAGAGGCCGAGGAATGAGAAAATGAGAAATTGGAG</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGAAGGAATTTCCAGAATTTCAAATGATGCTTCTGACCTTTTGGTATTTTCAGAAGATGCCACGTCATCTAGATTCTAWGCAAAATAAATTCTCAGAAACCTAAATTTTCCAGTAAAACATCAACCTTCTCGGGTGACTTTTCTCTTTCAGTAAACCTCTTAAGAAAATTGAGAAAATTGAAGAAGGGGGGGGGGGGGGGGCAAAAAGAGGCCGAGGAATGAGAAAATGAGAAATTGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15799</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>79196</contig_pos>
        <strand></strand>
        <context>TTTGAGAAAT[C/T]GAGGTTTTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGTGGTGGTACTAAAAAAGGATTTATGGGGGTTTTGAGATTTGAGAAAT</left_flank>
        <right_flank>GAGGTTTTCAGAGAAAAAGATAAAAAATTGACTAGAAAACCTGGTTTTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGACTCTATCTCGGCTCCTAGAAGCGCTAGAAATATGATTTTTACACAGCATTGTAGGAAATTTTTTCTATTTTATAGTTTAAAAAAAGCGGCCAACAATCAACTGAAAAATCCGTTTTTCTATATCTTATTGGCCGGTACTGTACTTTTAAAACAAGATAGAGAACTCTAAAAATGTATGTATGTTTGGTGGTGACGCGTGAAAACAAGACTAAAACAAAATGAGTCCTGTCCGTGTGAGGTCCATCCCCCCGTATGACGGGTCTCTCTCTCTCTCTCGGAAAATGGTGGGGGAAAAGTAGGAAACTCAATCCGTCAACCCAAATTTCTTCTTCTTCTCTTTTCGTTATACATGGGAGGAGGATAGCAAAAAGGAGAGAAAAATTTGGGGAGGGGATGAGTTATTTAGAAAGAGCGCTGACAGGAAAGAACACGAAATTTTTTGGTTTGGTGGTGGTACTAAAAAAGGATTTATGGGGGTTTTGAGATTTGAGAAATCGAGGTTTTCAGAGAAAAAGATAAAAAATTGACTAGAAAACCTGGTTTTTAACAAAAACCTGGAAAAAGAGCACTATAAAGTTTGAGCTCAATTATCTCGGCTCTTCTAAGAGATATCAAAAATCTTTCAACTGATAAAATACTTCTGATATTATGATAAACAATTTATCAATTGACAACTTTTCCATAACTTTGACGAAAAACGAGATATATCGGTTCAAAGTTGACGGTTCTAATGCGCACGATTTTGGTCGGTCTGCTAGTGTTTCTGAGTTTGTAGTCTAGCAGACCAAAATTCTAACTTTTCCCTCATTTTTAAAGAAAAATCTGAAAAATTAGGTTTAAAAATAGTATACTACGTAATACTAGCAAAAAAGAATATCAGGTTACCCAGAAAATGTGAATATAGGTAGAAAAAAAAAGTTTGCAACAAGTCTAGAAGAAAAAAAAAGGGAAAAAATATCAAACATTTTCGGTCTGCTAGACTACAAACTACAATGG</canonical>
            <polymorphic>GTGACTCTATCTCGGCTCCTAGAAGCGCTAGAAATATGATTTTTACACAGCATTGTAGGAAATTTTTTCTATTTTATAGTTTAAAAAAAGCGGCCAACAATCAACTGAAAAATCCGTTTTTCTATATCTTATTGGCCGGTACTGTACTTTTAAAACAAGATAGAGAACTCTAAAAATGTATGTATGTTTGGTGGTGACGCGTGAAAACAAGACTAAAACAAAATGAGTCCTGTCCGTGTGAGGTCCATCCCCCCGTATGACGGGTCTCTCTCTCTCTCTCGGAAAATGGTGGGGGAAAAGTAGGAAACTCAATCCGTCAACCCAAATTTCTTCTTCTTCTCTTTTCGTTATACATGGGAGGAGGATAGCAAAAAGGAGAGAAAAATTTGGGGAGGGGATGAGTTATTTAGAAAGAGCGCTGACAGGAAAGAACACGAAATTTTTTGGTTTGGTGGTGGTACTAAAAAAGGATTTATGGGGGTTTTGAGATTTGAGAAATYGAGGTTTTCAGAGAAAAAGATAAAAAATTGACTAGAAAACCTGGTTTTTAACAAAAACCTGGAAAAAGAGCACTATAAAGTTTGAGCTCAATTATCTCGGCTCTTCTAAGAGATATCAAAAATCTTTCAACTGATAAAATACTTCTGATATTATGATAAACAATTTATCAATTGACAACTTTTCCATAACTTTGACGAAAAACGAGATATATCGGTTCAAAGTTGACGGTTCTAATGCGCACGATTTTGGTCGGTCTGCTAGTGTTTCTGAGTTTGTAGTCTAGCAGACCAAAATTCTAACTTTTCCCTCATTTTTAAAGAAAAATCTGAAAAATTAGGTTTAAAAATAGTATACTACGTAATACTAGCAAAAAAGAATATCAGGTTACCCAGAAAATGTGAATATAGGTAGAAAAAAAAAGTTTGCAACAAGTCTAGAAGAAAAAAAAAGGGAAAAAATATCAAACATTTTCGGTCTGCTAGACTACAAACTACAATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTGGTGGTGGTACTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TCTTTAAAAATGAGGGAAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>GTTTGGTGGTGGTACTAAAAAAGGATTTATGGGGGTTTTGAGATTTGAGAAATCGAGGTTTTCAGAGAAAAAGATAAAAAATTGACTAGAAAACCTGGTTTTTAACAAAAACCTGGAAAAAGAGCACTATAAAGTTTGAGCTCAATTATCTCGGCTCTTCTAAGAGATATCAAAAATCTTTCAACTGATAAAATACTTCTGATATTATGATAAACAATTTATCAATTGACAACTTTTCCATAACTTTGACGAAAAACGAGATATATCGGTTCAAAGTTGACGGTTCTAATGCGCACGATTTTGGTCGGTCTGCTAGTGTTTCTGAGTTTGTAGTCTAGCAGACCAAAATTCTAACTTTTCCCTCATTTTTAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GTTTGGTGGTGGTACTAAAAAAGGATTTATGGGGGTTTTGAGATTTGAGAAATYGAGGTTTTCAGAGAAAAAGATAAAAAATTGACTAGAAAACCTGGTTTTTAACAAAAACCTGGAAAAAGAGCACTATAAAGTTTGAGCTCAATTATCTCGGCTCTTCTAAGAGATATCAAAAATCTTTCAACTGATAAAATACTTCTGATATTATGATAAACAATTTATCAATTGACAACTTTTCCATAACTTTGACGAAAAACGAGATATATCGGTTCAAAGTTGACGGTTCTAATGCGCACGATTTTGGTCGGTCTGCTAGTGTTTCTGAGTTTGTAGTCTAGCAGACCAAAATTCTAACTTTTCCCTCATTTTTAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15800</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>79177</contig_pos>
        <strand></strand>
        <context>ATTTATGGGG[G/T]TTTTGAGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACACGAAATTTTTTGGTTTGGTGGTGGTACTAAAAAAGGATTTATGGGG</left_flank>
        <right_flank>TTTTGAGATTTGAGAAATCGAGGTTTTCAGAGAAAAAGATAAAAAATTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGTCTCTAGCCTCTTGGAGTGACTCTATCTCGGCTCCTAGAAGCGCTAGAAATATGATTTTTACACAGCATTGTAGGAAATTTTTTCTATTTTATAGTTTAAAAAAAGCGGCCAACAATCAACTGAAAAATCCGTTTTTCTATATCTTATTGGCCGGTACTGTACTTTTAAAACAAGATAGAGAACTCTAAAAATGTATGTATGTTTGGTGGTGACGCGTGAAAACAAGACTAAAACAAAATGAGTCCTGTCCGTGTGAGGTCCATCCCCCCGTATGACGGGTCTCTCTCTCTCTCTCGGAAAATGGTGGGGGAAAAGTAGGAAACTCAATCCGTCAACCCAAATTTCTTCTTCTTCTCTTTTCGTTATACATGGGAGGAGGATAGCAAAAAGGAGAGAAAAATTTGGGGAGGGGATGAGTTATTTAGAAAGAGCGCTGACAGGAAAGAACACGAAATTTTTTGGTTTGGTGGTGGTACTAAAAAAGGATTTATGGGGGTTTTGAGATTTGAGAAATCGAGGTTTTCAGAGAAAAAGATAAAAAATTGACTAGAAAACCTGGTTTTTAACAAAAACCTGGAAAAAGAGCACTATAAAGTTTGAGCTCAATTATCTCGGCTCTTCTAAGAGATATCAAAAATCTTTCAACTGATAAAATACTTCTGATATTATGATAAACAATTTATCAATTGACAACTTTTCCATAACTTTGACGAAAAACGAGATATATCGGTTCAAAGTTGACGGTTCTAATGCGCACGATTTTGGTCGGTCTGCTAGTGTTTCTGAGTTTGTAGTCTAGCAGACCAAAATTCTAACTTTTCCCTCATTTTTAAAGAAAAATCTGAAAAATTAGGTTTAAAAATAGTATACTACGTAATACTAGCAAAAAAGAATATCAGGTTACCCAGAAAATGTGAATATAGGTAGAAAAAAAAAGTTTGCAACAAGTCTAGAAGAAAAAAAAAGGGAAAAAATATCAAACATTTTCGGTCTGCT</canonical>
            <polymorphic>GCGTCTCTAGCCTCTTGGAGTGACTCTATCTCGGCTCCTAGAAGCGCTAGAAATATGATTTTTACACAGCATTGTAGGAAATTTTTTCTATTTTATAGTTTAAAAAAAGCGGCCAACAATCAACTGAAAAATCCGTTTTTCTATATCTTATTGGCCGGTACTGTACTTTTAAAACAAGATAGAGAACTCTAAAAATGTATGTATGTTTGGTGGTGACGCGTGAAAACAAGACTAAAACAAAATGAGTCCTGTCCGTGTGAGGTCCATCCCCCCGTATGACGGGTCTCTCTCTCTCTCTCGGAAAATGGTGGGGGAAAAGTAGGAAACTCAATCCGTCAACCCAAATTTCTTCTTCTTCTCTTTTCGTTATACATGGGAGGAGGATAGCAAAAAGGAGAGAAAAATTTGGGGAGGGGATGAGTTATTTAGAAAGAGCGCTGACAGGAAAGAACACGAAATTTTTTGGTTTGGTGGTGGTACTAAAAAAGGATTTATGGGGKTTTTGAGATTTGAGAAATCGAGGTTTTCAGAGAAAAAGATAAAAAATTGACTAGAAAACCTGGTTTTTAACAAAAACCTGGAAAAAGAGCACTATAAAGTTTGAGCTCAATTATCTCGGCTCTTCTAAGAGATATCAAAAATCTTTCAACTGATAAAATACTTCTGATATTATGATAAACAATTTATCAATTGACAACTTTTCCATAACTTTGACGAAAAACGAGATATATCGGTTCAAAGTTGACGGTTCTAATGCGCACGATTTTGGTCGGTCTGCTAGTGTTTCTGAGTTTGTAGTCTAGCAGACCAAAATTCTAACTTTTCCCTCATTTTTAAAGAAAAATCTGAAAAATTAGGTTTAAAAATAGTATACTACGTAATACTAGCAAAAAAGAATATCAGGTTACCCAGAAAATGTGAATATAGGTAGAAAAAAAAAGTTTGCAACAAGTCTAGAAGAAAAAAAAAGGGAAAAAATATCAAACATTTTCGGTCTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGAAAAGTAGGAAACTCAATC</pcr_primer_p1>
		<pcr_primer_p2>ACCAGGTTTTCTAGTCAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GGGAAAAGTAGGAAACTCAATCCGTCAACCCAAATTTCTTCTTCTTCTCTTTTCGTTATACATGGGAGGAGGATAGCAAAAAGGAGAGAAAAATTTGGGGAGGGGATGAGTTATTTAGAAAGAGCGCTGACAGGAAAGAACACGAAATTTTTTGGTTTGGTGGTGGTACTAAAAAAGGATTTATGGGGGTTTTGAGATTTGAGAAATCGAGGTTTTCAGAGAAAAAGATAAAAAATTGACTAGAAAACCTGGT</canonical_amplicon>
		<polymorphic_amplicon>GGGAAAAGTAGGAAACTCAATCCGTCAACCCAAATTTCTTCTTCTTCTCTTTTCGTTATACATGGGAGGAGGATAGCAAAAAGGAGAGAAAAATTTGGGGAGGGGATGAGTTATTTAGAAAGAGCGCTGACAGGAAAGAACACGAAATTTTTTGGTTTGGTGGTGGTACTAAAAAAGGATTTATGGGGKTTTTGAGATTTGAGAAATCGAGGTTTTCAGAGAAAAAGATAAAAAATTGACTAGAAAACCTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15801</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>79072</contig_pos>
        <strand></strand>
        <context>TAGCAAAAAG[G/A]AGAGAAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTTCTTCTTCTTCTCTTTTCGTTATACATGGGAGGAGGATAGCAAAAAG</left_flank>
        <right_flank>AGAGAAAAATTTGGGGAGGGGATGAGTTATTTAGAAAGAGCGCTGACAGG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACCATGTAATTCTGTCCAAAAACCAACTTTCTAGCTCATCTAGACATCGAGACGCGGTCATTTAAAGTTTCCGAGGTTAGAGACGCAGTGTGTCTCGTCGTCTGCGTCTCTAGCCTCTTGGAGTGACTCTATCTCGGCTCCTAGAAGCGCTAGAAATATGATTTTTACACAGCATTGTAGGAAATTTTTTCTATTTTATAGTTTAAAAAAAGCGGCCAACAATCAACTGAAAAATCCGTTTTTCTATATCTTATTGGCCGGTACTGTACTTTTAAAACAAGATAGAGAACTCTAAAAATGTATGTATGTTTGGTGGTGACGCGTGAAAACAAGACTAAAACAAAATGAGTCCTGTCCGTGTGAGGTCCATCCCCCCGTATGACGGGTCTCTCTCTCTCTCTCGGAAAATGGTGGGGGAAAAGTAGGAAACTCAATCCGTCAACCCAAATTTCTTCTTCTTCTCTTTTCGTTATACATGGGAGGAGGATAGCAAAAAGGAGAGAAAAATTTGGGGAGGGGATGAGTTATTTAGAAAGAGCGCTGACAGGAAAGAACACGAAATTTTTTGGTTTGGTGGTGGTACTAAAAAAGGATTTATGGGGGTTTTGAGATTTGAGAAATCGAGGTTTTCAGAGAAAAAGATAAAAAATTGACTAGAAAACCTGGTTTTTAACAAAAACCTGGAAAAAGAGCACTATAAAGTTTGAGCTCAATTATCTCGGCTCTTCTAAGAGATATCAAAAATCTTTCAACTGATAAAATACTTCTGATATTATGATAAACAATTTATCAATTGACAACTTTTCCATAACTTTGACGAAAAACGAGATATATCGGTTCAAAGTTGACGGTTCTAATGCGCACGATTTTGGTCGGTCTGCTAGTGTTTCTGAGTTTGTAGTCTAGCAGACCAAAATTCTAACTTTTCCCTCATTTTTAAAGAAAAATCTGAAAAATTAGGTTTAAAAATAGTATACTACGTAATACTAGCAAAAAAG</canonical>
            <polymorphic>AAACCATGTAATTCTGTCCAAAAACCAACTTTCTAGCTCATCTAGACATCGAGACGCGGTCATTTAAAGTTTCCGAGGTTAGAGACGCAGTGTGTCTCGTCGTCTGCGTCTCTAGCCTCTTGGAGTGACTCTATCTCGGCTCCTAGAAGCGCTAGAAATATGATTTTTACACAGCATTGTAGGAAATTTTTTCTATTTTATAGTTTAAAAAAAGCGGCCAACAATCAACTGAAAAATCCGTTTTTCTATATCTTATTGGCCGGTACTGTACTTTTAAAACAAGATAGAGAACTCTAAAAATGTATGTATGTTTGGTGGTGACGCGTGAAAACAAGACTAAAACAAAATGAGTCCTGTCCGTGTGAGGTCCATCCCCCCGTATGACGGGTCTCTCTCTCTCTCTCGGAAAATGGTGGGGGAAAAGTAGGAAACTCAATCCGTCAACCCAAATTTCTTCTTCTTCTCTTTTCGTTATACATGGGAGGAGGATAGCAAAAAGRAGAGAAAAATTTGGGGAGGGGATGAGTTATTTAGAAAGAGCGCTGACAGGAAAGAACACGAAATTTTTTGGTTTGGTGGTGGTACTAAAAAAGGATTTATGGGGGTTTTGAGATTTGAGAAATCGAGGTTTTCAGAGAAAAAGATAAAAAATTGACTAGAAAACCTGGTTTTTAACAAAAACCTGGAAAAAGAGCACTATAAAGTTTGAGCTCAATTATCTCGGCTCTTCTAAGAGATATCAAAAATCTTTCAACTGATAAAATACTTCTGATATTATGATAAACAATTTATCAATTGACAACTTTTCCATAACTTTGACGAAAAACGAGATATATCGGTTCAAAGTTGACGGTTCTAATGCGCACGATTTTGGTCGGTCTGCTAGTGTTTCTGAGTTTGTAGTCTAGCAGACCAAAATTCTAACTTTTCCCTCATTTTTAAAGAAAAATCTGAAAAATTAGGTTTAAAAATAGTATACTACGTAATACTAGCAAAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGAAAAGTAGGAAACTCAATC</pcr_primer_p1>
		<pcr_primer_p2>ACCAGGTTTTCTAGTCAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GGGAAAAGTAGGAAACTCAATCCGTCAACCCAAATTTCTTCTTCTTCTCTTTTCGTTATACATGGGAGGAGGATAGCAAAAAGGAGAGAAAAATTTGGGGAGGGGATGAGTTATTTAGAAAGAGCGCTGACAGGAAAGAACACGAAATTTTTTGGTTTGGTGGTGGTACTAAAAAAGGATTTATGGGGGTTTTGAGATTTGAGAAATCGAGGTTTTCAGAGAAAAAGATAAAAAATTGACTAGAAAACCTGGT</canonical_amplicon>
		<polymorphic_amplicon>GGGAAAAGTAGGAAACTCAATCCGTCAACCCAAATTTCTTCTTCTTCTCTTTTCGTTATACATGGGAGGAGGATAGCAAAAAGRAGAGAAAAATTTGGGGAGGGGATGAGTTATTTAGAAAGAGCGCTGACAGGAAAGAACACGAAATTTTTTGGTTTGGTGGTGGTACTAAAAAAGGATTTATGGGGGTTTTGAGATTTGAGAAATCGAGGTTTTCAGAGAAAAAGATAAAAAATTGACTAGAAAACCTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15802</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>79052</contig_pos>
        <strand></strand>
        <context>YGTTATACAT[G/A]GGAGGAGGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AACTCAATCCGTCAACCCAAATTTCTTCTTCTTCTCTTTTCGTTATACAT</left_flank>
        <right_flank>GGAGGAGGATAGCAAAAAGGAGAGAAAAATTTGGGGAGGGGATGAGTTAT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAATCTGAAAACCCATTTCAAACCATGTAATTCTGTCCAAAAACCAACTTTCTAGCTCATCTAGACATCGAGACGCGGTCATTTAAAGTTTCCGAGGTTAGAGACGCAGTGTGTCTCGTCGTCTGCGTCTCTAGCCTCTTGGAGTGACTCTATCTCGGCTCCTAGAAGCGCTAGAAATATGATTTTTACACAGCATTGTAGGAAATTTTTTCTATTTTATAGTTTAAAAAAAGCGGCCAACAATCAACTGAAAAATCCGTTTTTCTATATCTTATTGGCCGGTACTGTACTTTTAAAACAAGATAGAGAACTCTAAAAATGTATGTATGTTTGGTGGTGACGCGTGAAAACAAGACTAAAACAAAATGAGTCCTGTCCGTGTGAGGTCCATCCCCCCGTATGACGGGTCTCTCTCTCTCTCTCGGAAAATGGTGGGGGAAAAGTAGGAAACTCAATCCGTCAACCCAAATTTCTTCTTCTTCTCTTTTCGTTATACATGGGAGGAGGATAGCAAAAAGGAGAGAAAAATTTGGGGAGGGGATGAGTTATTTAGAAAGAGCGCTGACAGGAAAGAACACGAAATTTTTTGGTTTGGTGGTGGTACTAAAAAAGGATTTATGGGGGTTTTGAGATTTGAGAAATCGAGGTTTTCAGAGAAAAAGATAAAAAATTGACTAGAAAACCTGGTTTTTAACAAAAACCTGGAAAAAGAGCACTATAAAGTTTGAGCTCAATTATCTCGGCTCTTCTAAGAGATATCAAAAATCTTTCAACTGATAAAATACTTCTGATATTATGATAAACAATTTATCAATTGACAACTTTTCCATAACTTTGACGAAAAACGAGATATATCGGTTCAAAGTTGACGGTTCTAATGCGCACGATTTTGGTCGGTCTGCTAGTGTTTCTGAGTTTGTAGTCTAGCAGACCAAAATTCTAACTTTTCCCTCATTTTTAAAGAAAAATCTGAAAAATTAGGTTTAAAAATAGTATACT</canonical>
            <polymorphic>ATAATCTGAAAACCCATTTCAAACCATGTAATTCTGTCCAAAAACCAACTTTCTAGCTCATCTAGACATCGAGACGCGGTCATTTAAAGTTTCCGAGGTTAGAGACGCAGTGTGTCTCGTCGTCTGCGTCTCTAGCCTCTTGGAGTGACTCTATCTCGGCTCCTAGAAGCGCTAGAAATATGATTTTTACACAGCATTGTAGGAAATTTTTTCTATTTTATAGTTTAAAAAAAGCGGCCAACAATCAACTGAAAAATCCGTTTTTCTATATCTTATTGGCCGGTACTGTACTTTTAAAACAAGATAGAGAACTCTAAAAATGTATGTATGTTTGGTGGTGACGCGTGAAAACAAGACTAAAACAAAATGAGTCCTGTCCGTGTGAGGTCCATCCCCCCGTATGACGGGTCTCTCTCTCTCTCTCGGAAAATGGTGGGGGAAAAGTAGGAAACTCAATCCGTCAACCCAAATTTCTTCTTCTTCTCTTTTCGTTATACATRGGAGGAGGATAGCAAAAAGGAGAGAAAAATTTGGGGAGGGGATGAGTTATTTAGAAAGAGCGCTGACAGGAAAGAACACGAAATTTTTTGGTTTGGTGGTGGTACTAAAAAAGGATTTATGGGGGTTTTGAGATTTGAGAAATCGAGGTTTTCAGAGAAAAAGATAAAAAATTGACTAGAAAACCTGGTTTTTAACAAAAACCTGGAAAAAGAGCACTATAAAGTTTGAGCTCAATTATCTCGGCTCTTCTAAGAGATATCAAAAATCTTTCAACTGATAAAATACTTCTGATATTATGATAAACAATTTATCAATTGACAACTTTTCCATAACTTTGACGAAAAACGAGATATATCGGTTCAAAGTTGACGGTTCTAATGCGCACGATTTTGGTCGGTCTGCTAGTGTTTCTGAGTTTGTAGTCTAGCAGACCAAAATTCTAACTTTTCCCTCATTTTTAAAGAAAAATCTGAAAAATTAGGTTTAAAAATAGTATACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 472 25</canonical_bands>
                <polymorphic_bands>975 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATGTATGTATGTTTGGTGGT</pcr_primer_p1>
		<pcr_primer_p2>AGCGCTCTTTCTAAATAACTCAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAATGTATGTATGTTTGGTGGTGACGCGTGAAAACAAGACTAAAACAAAATGAGTCCTGTCCGTGTGAGGTCCATCCCCCCGTATGACGGGTCTCTCTCTCTCTCTCGGAAAATGGTGGGGGAAAAGTAGGAAACTCAATCCGTCAACCCAAATTTCTTCTTCTTCTCTTTTCGTTATACATGGGAGGAGGATAGCAAAAAGGAGAGAAAAATTTGGGGAGGGGATGAGTTATTTAGAAAGAGCGCT</canonical_amplicon>
		<polymorphic_amplicon>AAAATGTATGTATGTTTGGTGGTGACGCGTGAAAACAAGACTAAAACAAAATGAGTCCTGTCCGTGTGAGGTCCATCCCCCCGTATGACGGGTCTCTCTCTCTCTCTCGGAAAATGGTGGGGGAAAAGTAGGAAACTCAATCCGTCAACCCAAATTTCTTCTTCTTCTCTTTTCGTTATACATRGGAGGAGGATAGCAAAAAGGAGAGAAAAATTTGGGGAGGGGATGAGTTATTTAGAAAGAGCGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15803</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>79042</contig_pos>
        <strand></strand>
        <context>CTTCTCTTTT[C/T]GTTATACATR</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAGTAGGAAACTCAATCCGTCAACCCAAATTTCTTCTTCTTCTCTTTT</left_flank>
        <right_flank>GTTATACATGGGAGGAGGATAGCAAAAAGGAGAGAAAAATTTGGGGAGGG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCCATAAATAATCTGAAAACCCATTTCAAACCATGTAATTCTGTCCAAAAACCAACTTTCTAGCTCATCTAGACATCGAGACGCGGTCATTTAAAGTTTCCGAGGTTAGAGACGCAGTGTGTCTCGTCGTCTGCGTCTCTAGCCTCTTGGAGTGACTCTATCTCGGCTCCTAGAAGCGCTAGAAATATGATTTTTACACAGCATTGTAGGAAATTTTTTCTATTTTATAGTTTAAAAAAAGCGGCCAACAATCAACTGAAAAATCCGTTTTTCTATATCTTATTGGCCGGTACTGTACTTTTAAAACAAGATAGAGAACTCTAAAAATGTATGTATGTTTGGTGGTGACGCGTGAAAACAAGACTAAAACAAAATGAGTCCTGTCCGTGTGAGGTCCATCCCCCCGTATGACGGGTCTCTCTCTCTCTCTCGGAAAATGGTGGGGGAAAAGTAGGAAACTCAATCCGTCAACCCAAATTTCTTCTTCTTCTCTTTTCGTTATACATGGGAGGAGGATAGCAAAAAGGAGAGAAAAATTTGGGGAGGGGATGAGTTATTTAGAAAGAGCGCTGACAGGAAAGAACACGAAATTTTTTGGTTTGGTGGTGGTACTAAAAAAGGATTTATGGGGGTTTTGAGATTTGAGAAATCGAGGTTTTCAGAGAAAAAGATAAAAAATTGACTAGAAAACCTGGTTTTTAACAAAAACCTGGAAAAAGAGCACTATAAAGTTTGAGCTCAATTATCTCGGCTCTTCTAAGAGATATCAAAAATCTTTCAACTGATAAAATACTTCTGATATTATGATAAACAATTTATCAATTGACAACTTTTCCATAACTTTGACGAAAAACGAGATATATCGGTTCAAAGTTGACGGTTCTAATGCGCACGATTTTGGTCGGTCTGCTAGTGTTTCTGAGTTTGTAGTCTAGCAGACCAAAATTCTAACTTTTCCCTCATTTTTAAAGAAAAATCTGAAAAATTAGGTTTAAAA</canonical>
            <polymorphic>TTTTCCATAAATAATCTGAAAACCCATTTCAAACCATGTAATTCTGTCCAAAAACCAACTTTCTAGCTCATCTAGACATCGAGACGCGGTCATTTAAAGTTTCCGAGGTTAGAGACGCAGTGTGTCTCGTCGTCTGCGTCTCTAGCCTCTTGGAGTGACTCTATCTCGGCTCCTAGAAGCGCTAGAAATATGATTTTTACACAGCATTGTAGGAAATTTTTTCTATTTTATAGTTTAAAAAAAGCGGCCAACAATCAACTGAAAAATCCGTTTTTCTATATCTTATTGGCCGGTACTGTACTTTTAAAACAAGATAGAGAACTCTAAAAATGTATGTATGTTTGGTGGTGACGCGTGAAAACAAGACTAAAACAAAATGAGTCCTGTCCGTGTGAGGTCCATCCCCCCGTATGACGGGTCTCTCTCTCTCTCTCGGAAAATGGTGGGGGAAAAGTAGGAAACTCAATCCGTCAACCCAAATTTCTTCTTCTTCTCTTTTYGTTATACATGGGAGGAGGATAGCAAAAAGGAGAGAAAAATTTGGGGAGGGGATGAGTTATTTAGAAAGAGCGCTGACAGGAAAGAACACGAAATTTTTTGGTTTGGTGGTGGTACTAAAAAAGGATTTATGGGGGTTTTGAGATTTGAGAAATCGAGGTTTTCAGAGAAAAAGATAAAAAATTGACTAGAAAACCTGGTTTTTAACAAAAACCTGGAAAAAGAGCACTATAAAGTTTGAGCTCAATTATCTCGGCTCTTCTAAGAGATATCAAAAATCTTTCAACTGATAAAATACTTCTGATATTATGATAAACAATTTATCAATTGACAACTTTTCCATAACTTTGACGAAAAACGAGATATATCGGTTCAAAGTTGACGGTTCTAATGCGCACGATTTTGGTCGGTCTGCTAGTGTTTCTGAGTTTGTAGTCTAGCAGACCAAAATTCTAACTTTTCCCTCATTTTTAAAGAAAAATCTGAAAAATTAGGTTTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATGTATGTATGTTTGGTGGT</pcr_primer_p1>
		<pcr_primer_p2>AGCGCTCTTTCTAAATAACTCAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAATGTATGTATGTTTGGTGGTGACGCGTGAAAACAAGACTAAAACAAAATGAGTCCTGTCCGTGTGAGGTCCATCCCCCCGTATGACGGGTCTCTCTCTCTCTCTCGGAAAATGGTGGGGGAAAAGTAGGAAACTCAATCCGTCAACCCAAATTTCTTCTTCTTCTCTTTTCGTTATACATGGGAGGAGGATAGCAAAAAGGAGAGAAAAATTTGGGGAGGGGATGAGTTATTTAGAAAGAGCGCT</canonical_amplicon>
		<polymorphic_amplicon>AAAATGTATGTATGTTTGGTGGTGACGCGTGAAAACAAGACTAAAACAAAATGAGTCCTGTCCGTGTGAGGTCCATCCCCCCGTATGACGGGTCTCTCTCTCTCTCTCGGAAAATGGTGGGGGAAAAGTAGGAAACTCAATCCGTCAACCCAAATTTCTTCTTCTTCTCTTTTYGTTATACATGGGAGGAGGATAGCAAAAAGGAGAGAAAAATTTGGGGAGGGGATGAGTTATTTAGAAAGAGCGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15807</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>120133</contig_pos>
        <strand>+</strand>
        <context>TGTGAACGTG[A/T]ATATTGGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCATTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTG</left_flank>
        <right_flank>ATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAGTTTTAAGGCTCTATAGGATGATAAGTGTAGAAATGTGACTCAATTTCTTTTGGGTCTTTCTAATGGACCCCAATTTACATATAAGAAAAATGTCAGCAAACAGTAATGCCTCCATGAATATGCTGTCTCTCAGGCTTAGTTTTTTTTGTATAAAATATATCATCAATACGCACTTTTTGAATAAGATCCCAGAATTTTACTTTCTCGCACACTTTTTGTTTTTTCCAATTTCGGACTTTTATTTTTTCTTGGGACCTCTATTTCATTTTCGGACCTCTAAACTAGAAGAGAGCCCAATCATCTTCAAGAACCCAGAACCTGGATAAAATAATCCCAACTAGGAACATTTTATTTTCCTAATAGGATTATTTCCTTTCTGGAAGGCGTTAGGCTTCTGAATAGTCAACTAATCCCTCCCGTATAGTTAGTATCTTGTCTGAAAACTCATTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTATGCTCATTAAAACAGTTCATCGATGCTGAAAAATTGGAATGGAAAATGGATAATGCATGATTGGAGCTGAAATTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAACCTGAGCAATTGAGAATTCAAGAATTTTATTATTGGGGTAAATATCTATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTGCTGAGCATTCTAGAAATACATTTTTCTAGAAGGGTCTAGCACAAGAATGGTCGGAAAAGGATGAATACTACAGTAATCCAAGAAAAACAGCATAGAAATTTCTAAACCTAAAATCTCAGATCAAATTTTTGGCTTACATTTCGGAAGATATTAAAAACTACCGTACACCAAAACAATAATAATTTCTGAATCTAGAAAACATATTC</canonical>
            <polymorphic>TTGAGTTTTAAGGCTCTATAGGATGATAAGTGTAGAAATGTGACTCAATTTCTTTTGGGTCTTTCTAATGGACCCCAATTTACATATAAGAAAAATGTCAGCAAACAGTAATGCCTCCATGAATATGCTGTCTCTCAGGCTTAGTTTTTTTTGTATAAAATATATCATCAATACGCACTTTTTGAATAAGATCCCAGAATTTTACTTTCTCGCACACTTTTTGTTTTTTCCAATTTCGGACTTTTATTTTTTCTTGGGACCTCTATTTCATTTTCGGACCTCTAAACTAGAAGAGAGCCCAATCATCTTCAAGAACCCAGAACCTGGATAAAATAATCCCAACTAGGAACATTTTATTTTCCTAATAGGATTATTTCCTTTCTGGAAGGCGTTAGGCTTCTGAATAGTCAACTAATCCCTCCCGTATAGTTAGTATCTTGTCTGAAAACTCATTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGWATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTATGCTCATTAAAACAGTTCATCGATGCTGAAAAATTGGAATGGAAAATGGATAATGCATGATTGGAGCTGAAATTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAACCTGAGCAATTGAGAATTCAAGAATTTTATTATTGGGGTAAATATCTATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTGCTGAGCATTCTAGAAATACATTTTTCTAGAAGGGTCTAGCACAAGAATGGTCGGAAAAGGATGAATACTACAGTAATCCAAGAAAAACAGCATAGAAATTTCTAAACCTAAAATCTCAGATCAAATTTTTGGCTTACATTTCGGAAGATATTAAAAACTACCGTACACCAAAACAATAATAATTTCTGAATCTAGAAAACATATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAATAATCCCAACTAGGAACA</pcr_primer_p1>
		<pcr_primer_p2>TACATGATCTGTCAAGTCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TAAAATAATCCCAACTAGGAACATTTTATTTTCCTAATAGGATTATTTCCTTTCTGGAAGGCGTTAGGCTTCTGAATAGTCAACTAATCCCTCCCGTATAGTTAGTATCTTGTCTGAAAACTCATTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTA</canonical_amplicon>
		<polymorphic_amplicon>TAAAATAATCCCAACTAGGAACATTTTATTTTCCTAATAGGATTATTTCCTTTCTGGAAGGCGTTAGGCTTCTGAATAGTCAACTAATCCCTCCCGTATAGTTAGTATCTTGTCTGAAAACTCATTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGWATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15811</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>120152</contig_pos>
        <strand>+</strand>
        <context>GAGAAACTCT[A/G]RAAWTTCGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCT</left_flank>
        <right_flank>GAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGATGATAAGTGTAGAAATGTGACTCAATTTCTTTTGGGTCTTTCTAATGGACCCCAATTTACATATAAGAAAAATGTCAGCAAACAGTAATGCCTCCATGAATATGCTGTCTCTCAGGCTTAGTTTTTTTTGTATAAAATATATCATCAATACGCACTTTTTGAATAAGATCCCAGAATTTTACTTTCTCGCACACTTTTTGTTTTTTCCAATTTCGGACTTTTATTTTTTCTTGGGACCTCTATTTCATTTTCGGACCTCTAAACTAGAAGAGAGCCCAATCATCTTCAAGAACCCAGAACCTGGATAAAATAATCCCAACTAGGAACATTTTATTTTCCTAATAGGATTATTTCCTTTCTGGAAGGCGTTAGGCTTCTGAATAGTCAACTAATCCCTCCCGTATAGTTAGTATCTTGTCTGAAAACTCATTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTATGCTCATTAAAACAGTTCATCGATGCTGAAAAATTGGAATGGAAAATGGATAATGCATGATTGGAGCTGAAATTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAACCTGAGCAATTGAGAATTCAAGAATTTTATTATTGGGGTAAATATCTATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTGCTGAGCATTCTAGAAATACATTTTTCTAGAAGGGTCTAGCACAAGAATGGTCGGAAAAGGATGAATACTACAGTAATCCAAGAAAAACAGCATAGAAATTTCTAAACCTAAAATCTCAGATCAAATTTTTGGCTTACATTTCGGAAGATATTAAAAACTACCGTACACCAAAACAATAATAATTTCTGAATCTAGAAAACATATTCAAACTGAATTTAGAAGTCA</canonical>
            <polymorphic>AGGATGATAAGTGTAGAAATGTGACTCAATTTCTTTTGGGTCTTTCTAATGGACCCCAATTTACATATAAGAAAAATGTCAGCAAACAGTAATGCCTCCATGAATATGCTGTCTCTCAGGCTTAGTTTTTTTTGTATAAAATATATCATCAATACGCACTTTTTGAATAAGATCCCAGAATTTTACTTTCTCGCACACTTTTTGTTTTTTCCAATTTCGGACTTTTATTTTTTCTTGGGACCTCTATTTCATTTTCGGACCTCTAAACTAGAAGAGAGCCCAATCATCTTCAAGAACCCAGAACCTGGATAAAATAATCCCAACTAGGAACATTTTATTTTCCTAATAGGATTATTTCCTTTCTGGAAGGCGTTAGGCTTCTGAATAGTCAACTAATCCCTCCCGTATAGTTAGTATCTTGTCTGAAAACTCATTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTRGAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTATGCTCATTAAAACAGTTCATCGATGCTGAAAAATTGGAATGGAAAATGGATAATGCATGATTGGAGCTGAAATTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAACCTGAGCAATTGAGAATTCAAGAATTTTATTATTGGGGTAAATATCTATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTGCTGAGCATTCTAGAAATACATTTTTCTAGAAGGGTCTAGCACAAGAATGGTCGGAAAAGGATGAATACTACAGTAATCCAAGAAAAACAGCATAGAAATTTCTAAACCTAAAATCTCAGATCAAATTTTTGGCTTACATTTCGGAAGATATTAAAAACTACCGTACACCAAAACAATAATAATTTCTGAATCTAGAAAACATATTCAAACTGAATTTAGAAGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAATAATCCCAACTAGGAACA</pcr_primer_p1>
		<pcr_primer_p2>TACATGATCTGTCAAGTCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TAAAATAATCCCAACTAGGAACATTTTATTTTCCTAATAGGATTATTTCCTTTCTGGAAGGCGTTAGGCTTCTGAATAGTCAACTAATCCCTCCCGTATAGTTAGTATCTTGTCTGAAAACTCATTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTA</canonical_amplicon>
		<polymorphic_amplicon>TAAAATAATCCCAACTAGGAACATTTTATTTTCCTAATAGGATTATTTCCTTTCTGGAAGGCGTTAGGCTTCTGAATAGTCAACTAATCCCTCCCGTATAGTTAGTATCTTGTCTGAAAACTCATTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTRGAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15812</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>120153</contig_pos>
        <strand>+</strand>
        <context>AGAAACTCTR[A/G]AAWTTCGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTG</left_flank>
        <right_flank>AAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATGATAAGTGTAGAAATGTGACTCAATTTCTTTTGGGTCTTTCTAATGGACCCCAATTTACATATAAGAAAAATGTCAGCAAACAGTAATGCCTCCATGAATATGCTGTCTCTCAGGCTTAGTTTTTTTTGTATAAAATATATCATCAATACGCACTTTTTGAATAAGATCCCAGAATTTTACTTTCTCGCACACTTTTTGTTTTTTCCAATTTCGGACTTTTATTTTTTCTTGGGACCTCTATTTCATTTTCGGACCTCTAAACTAGAAGAGAGCCCAATCATCTTCAAGAACCCAGAACCTGGATAAAATAATCCCAACTAGGAACATTTTATTTTCCTAATAGGATTATTTCCTTTCTGGAAGGCGTTAGGCTTCTGAATAGTCAACTAATCCCTCCCGTATAGTTAGTATCTTGTCTGAAAACTCATTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTATGCTCATTAAAACAGTTCATCGATGCTGAAAAATTGGAATGGAAAATGGATAATGCATGATTGGAGCTGAAATTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAACCTGAGCAATTGAGAATTCAAGAATTTTATTATTGGGGTAAATATCTATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTGCTGAGCATTCTAGAAATACATTTTTCTAGAAGGGTCTAGCACAAGAATGGTCGGAAAAGGATGAATACTACAGTAATCCAAGAAAAACAGCATAGAAATTTCTAAACCTAAAATCTCAGATCAAATTTTTGGCTTACATTTCGGAAGATATTAAAAACTACCGTACACCAAAACAATAATAATTTCTGAATCTAGAAAACATATTCAAACTGAATTTAGAAGTCAA</canonical>
            <polymorphic>GGATGATAAGTGTAGAAATGTGACTCAATTTCTTTTGGGTCTTTCTAATGGACCCCAATTTACATATAAGAAAAATGTCAGCAAACAGTAATGCCTCCATGAATATGCTGTCTCTCAGGCTTAGTTTTTTTTGTATAAAATATATCATCAATACGCACTTTTTGAATAAGATCCCAGAATTTTACTTTCTCGCACACTTTTTGTTTTTTCCAATTTCGGACTTTTATTTTTTCTTGGGACCTCTATTTCATTTTCGGACCTCTAAACTAGAAGAGAGCCCAATCATCTTCAAGAACCCAGAACCTGGATAAAATAATCCCAACTAGGAACATTTTATTTTCCTAATAGGATTATTTCCTTTCTGGAAGGCGTTAGGCTTCTGAATAGTCAACTAATCCCTCCCGTATAGTTAGTATCTTGTCTGAAAACTCATTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGRAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTATGCTCATTAAAACAGTTCATCGATGCTGAAAAATTGGAATGGAAAATGGATAATGCATGATTGGAGCTGAAATTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAACCTGAGCAATTGAGAATTCAAGAATTTTATTATTGGGGTAAATATCTATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTGCTGAGCATTCTAGAAATACATTTTTCTAGAAGGGTCTAGCACAAGAATGGTCGGAAAAGGATGAATACTACAGTAATCCAAGAAAAACAGCATAGAAATTTCTAAACCTAAAATCTCAGATCAAATTTTTGGCTTACATTTCGGAAGATATTAAAAACTACCGTACACCAAAACAATAATAATTTCTGAATCTAGAAAACATATTCAAACTGAATTTAGAAGTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>290 166 154 135 80 72 34 27 26 16</canonical_bands>
                <polymorphic_bands>290 289 166 80 72 34 27 26 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAATAATCCCAACTAGGAACA</pcr_primer_p1>
		<pcr_primer_p2>TACATGATCTGTCAAGTCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TAAAATAATCCCAACTAGGAACATTTTATTTTCCTAATAGGATTATTTCCTTTCTGGAAGGCGTTAGGCTTCTGAATAGTCAACTAATCCCTCCCGTATAGTTAGTATCTTGTCTGAAAACTCATTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTA</canonical_amplicon>
		<polymorphic_amplicon>TAAAATAATCCCAACTAGGAACATTTTATTTTCCTAATAGGATTATTTCCTTTCTGGAAGGCGTTAGGCTTCTGAATAGTCAACTAATCCCTCCCGTATAGTTAGTATCTTGTCTGAAAACTCATTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGRAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15813</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>120156</contig_pos>
        <strand>+</strand>
        <context>AACTCTRRAA[A/T]TTCGAAAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAA</left_flank>
        <right_flank>TTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATAAGTGTAGAAATGTGACTCAATTTCTTTTGGGTCTTTCTAATGGACCCCAATTTACATATAAGAAAAATGTCAGCAAACAGTAATGCCTCCATGAATATGCTGTCTCTCAGGCTTAGTTTTTTTTGTATAAAATATATCATCAATACGCACTTTTTGAATAAGATCCCAGAATTTTACTTTCTCGCACACTTTTTGTTTTTTCCAATTTCGGACTTTTATTTTTTCTTGGGACCTCTATTTCATTTTCGGACCTCTAAACTAGAAGAGAGCCCAATCATCTTCAAGAACCCAGAACCTGGATAAAATAATCCCAACTAGGAACATTTTATTTTCCTAATAGGATTATTTCCTTTCTGGAAGGCGTTAGGCTTCTGAATAGTCAACTAATCCCTCCCGTATAGTTAGTATCTTGTCTGAAAACTCATTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTATGCTCATTAAAACAGTTCATCGATGCTGAAAAATTGGAATGGAAAATGGATAATGCATGATTGGAGCTGAAATTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAACCTGAGCAATTGAGAATTCAAGAATTTTATTATTGGGGTAAATATCTATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTGCTGAGCATTCTAGAAATACATTTTTCTAGAAGGGTCTAGCACAAGAATGGTCGGAAAAGGATGAATACTACAGTAATCCAAGAAAAACAGCATAGAAATTTCTAAACCTAAAATCTCAGATCAAATTTTTGGCTTACATTTCGGAAGATATTAAAAACTACCGTACACCAAAACAATAATAATTTCTGAATCTAGAAAACATATTCAAACTGAATTTAGAAGTCAAATT</canonical>
            <polymorphic>TGATAAGTGTAGAAATGTGACTCAATTTCTTTTGGGTCTTTCTAATGGACCCCAATTTACATATAAGAAAAATGTCAGCAAACAGTAATGCCTCCATGAATATGCTGTCTCTCAGGCTTAGTTTTTTTTGTATAAAATATATCATCAATACGCACTTTTTGAATAAGATCCCAGAATTTTACTTTCTCGCACACTTTTTGTTTTTTCCAATTTCGGACTTTTATTTTTTCTTGGGACCTCTATTTCATTTTCGGACCTCTAAACTAGAAGAGAGCCCAATCATCTTCAAGAACCCAGAACCTGGATAAAATAATCCCAACTAGGAACATTTTATTTTCCTAATAGGATTATTTCCTTTCTGGAAGGCGTTAGGCTTCTGAATAGTCAACTAATCCCTCCCGTATAGTTAGTATCTTGTCTGAAAACTCATTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAAWTTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTATGCTCATTAAAACAGTTCATCGATGCTGAAAAATTGGAATGGAAAATGGATAATGCATGATTGGAGCTGAAATTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAACCTGAGCAATTGAGAATTCAAGAATTTTATTATTGGGGTAAATATCTATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTGCTGAGCATTCTAGAAATACATTTTTCTAGAAGGGTCTAGCACAAGAATGGTCGGAAAAGGATGAATACTACAGTAATCCAAGAAAAACAGCATAGAAATTTCTAAACCTAAAATCTCAGATCAAATTTTTGGCTTACATTTCGGAAGATATTAAAAACTACCGTACACCAAAACAATAATAATTTCTGAATCTAGAAAACATATTCAAACTGAATTTAGAAGTCAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>324 174 163 99 89 75 27 24 17 8</canonical_bands>
                <polymorphic_bands>348 174 163 99 89 75 27 17 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>290 121 101 62 60 57 40 39 34 32 30 28 27 24 23 13 8 7 4</canonical_bands>
                <polymorphic_bands>314 121 101 62 60 57 40 39 34 32 30 28 27 23 13 8 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGGTGTTAAGGATGAGATT</pcr_primer_p1>
		<pcr_primer_p2>GTTTTCCAGATTTCTTCAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTATGCTCATTAAAACAGTTCATCGATGCTGAAAAATTGGAATGGAAAATGGATAATGCATGATTGGAGCTGAAATTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAAWTTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTATGCTCATTAAAACAGTTCATCGATGCTGAAAAATTGGAATGGAAAATGGATAATGCATGATTGGAGCTGAAATTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15814</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>120184</contig_pos>
        <strand>+</strand>
        <context>AGGAAAATTT[C/T]AAAAGGACTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTT</left_flank>
        <right_flank>AAAAGGACTTGACAGATCATGTATGCTCATTAAAACAGTTCATCGATGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTGGGTCTTTCTAATGGACCCCAATTTACATATAAGAAAAATGTCAGCAAACAGTAATGCCTCCATGAATATGCTGTCTCTCAGGCTTAGTTTTTTTTGTATAAAATATATCATCAATACGCACTTTTTGAATAAGATCCCAGAATTTTACTTTCTCGCACACTTTTTGTTTTTTCCAATTTCGGACTTTTATTTTTTCTTGGGACCTCTATTTCATTTTCGGACCTCTAAACTAGAAGAGAGCCCAATCATCTTCAAGAACCCAGAACCTGGATAAAATAATCCCAACTAGGAACATTTTATTTTCCTAATAGGATTATTTCCTTTCTGGAAGGCGTTAGGCTTCTGAATAGTCAACTAATCCCTCCCGTATAGTTAGTATCTTGTCTGAAAACTCATTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTATGCTCATTAAAACAGTTCATCGATGCTGAAAAATTGGAATGGAAAATGGATAATGCATGATTGGAGCTGAAATTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAACCTGAGCAATTGAGAATTCAAGAATTTTATTATTGGGGTAAATATCTATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTGCTGAGCATTCTAGAAATACATTTTTCTAGAAGGGTCTAGCACAAGAATGGTCGGAAAAGGATGAATACTACAGTAATCCAAGAAAAACAGCATAGAAATTTCTAAACCTAAAATCTCAGATCAAATTTTTGGCTTACATTTCGGAAGATATTAAAAACTACCGTACACCAAAACAATAATAATTTCTGAATCTAGAAAACATATTCAAACTGAATTTAGAAGTCAAATTTCAGATTCTCCATAGTCAAAAACTCTCA</canonical>
            <polymorphic>CTTTTGGGTCTTTCTAATGGACCCCAATTTACATATAAGAAAAATGTCAGCAAACAGTAATGCCTCCATGAATATGCTGTCTCTCAGGCTTAGTTTTTTTTGTATAAAATATATCATCAATACGCACTTTTTGAATAAGATCCCAGAATTTTACTTTCTCGCACACTTTTTGTTTTTTCCAATTTCGGACTTTTATTTTTTCTTGGGACCTCTATTTCATTTTCGGACCTCTAAACTAGAAGAGAGCCCAATCATCTTCAAGAACCCAGAACCTGGATAAAATAATCCCAACTAGGAACATTTTATTTTCCTAATAGGATTATTTCCTTTCTGGAAGGCGTTAGGCTTCTGAATAGTCAACTAATCCCTCCCGTATAGTTAGTATCTTGTCTGAAAACTCATTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTTYAAAAGGACTTGACAGATCATGTATGCTCATTAAAACAGTTCATCGATGCTGAAAAATTGGAATGGAAAATGGATAATGCATGATTGGAGCTGAAATTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAACCTGAGCAATTGAGAATTCAAGAATTTTATTATTGGGGTAAATATCTATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTGCTGAGCATTCTAGAAATACATTTTTCTAGAAGGGTCTAGCACAAGAATGGTCGGAAAAGGATGAATACTACAGTAATCCAAGAAAAACAGCATAGAAATTTCTAAACCTAAAATCTCAGATCAAATTTTTGGCTTACATTTCGGAAGATATTAAAAACTACCGTACACCAAAACAATAATAATTTCTGAATCTAGAAAACATATTCAAACTGAATTTAGAAGTCAAATTTCAGATTCTCCATAGTCAAAAACTCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>414 364 106 85 31</canonical_bands>
                <polymorphic_bands>414 364 116 106</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGGTGTTAAGGATGAGATT</pcr_primer_p1>
		<pcr_primer_p2>GTTTTCCAGATTTCTTCAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTATGCTCATTAAAACAGTTCATCGATGCTGAAAAATTGGAATGGAAAATGGATAATGCATGATTGGAGCTGAAATTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTTYAAAAGGACTTGACAGATCATGTATGCTCATTAAAACAGTTCATCGATGCTGAAAAATTGGAATGGAAAATGGATAATGCATGATTGGAGCTGAAATTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15815</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>120258</contig_pos>
        <strand>+</strand>
        <context>GGAAAATGGA[A/T]AATGCATGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGCTCATTAAAACAGTTCATCGATGCTGAAAAATTGGAATGGAAAATGGA</left_flank>
        <right_flank>AATGCATGATTGGAGCTGAAATTTCAGATTTTGAAGTTTTGATTTCTAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTGTCTCTCAGGCTTAGTTTTTTTTGTATAAAATATATCATCAATACGCACTTTTTGAATAAGATCCCAGAATTTTACTTTCTCGCACACTTTTTGTTTTTTCCAATTTCGGACTTTTATTTTTTCTTGGGACCTCTATTTCATTTTCGGACCTCTAAACTAGAAGAGAGCCCAATCATCTTCAAGAACCCAGAACCTGGATAAAATAATCCCAACTAGGAACATTTTATTTTCCTAATAGGATTATTTCCTTTCTGGAAGGCGTTAGGCTTCTGAATAGTCAACTAATCCCTCCCGTATAGTTAGTATCTTGTCTGAAAACTCATTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTATGCTCATTAAAACAGTTCATCGATGCTGAAAAATTGGAATGGAAAATGGATAATGCATGATTGGAGCTGAAATTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAACCTGAGCAATTGAGAATTCAAGAATTTTATTATTGGGGTAAATATCTATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTGCTGAGCATTCTAGAAATACATTTTTCTAGAAGGGTCTAGCACAAGAATGGTCGGAAAAGGATGAATACTACAGTAATCCAAGAAAAACAGCATAGAAATTTCTAAACCTAAAATCTCAGATCAAATTTTTGGCTTACATTTCGGAAGATATTAAAAACTACCGTACACCAAAACAATAATAATTTCTGAATCTAGAAAACATATTCAAACTGAATTTAGAAGTCAAATTTCAGATTCTCCATAGTCAAAAACTCTCAATTTCCTTTTTTTTTCAAAATTATAAGAAGTTTTCAAAATTTGAAGGTTTGATCTCTCTAGGGATGAGTAATGG</canonical>
            <polymorphic>TGCTGTCTCTCAGGCTTAGTTTTTTTTGTATAAAATATATCATCAATACGCACTTTTTGAATAAGATCCCAGAATTTTACTTTCTCGCACACTTTTTGTTTTTTCCAATTTCGGACTTTTATTTTTTCTTGGGACCTCTATTTCATTTTCGGACCTCTAAACTAGAAGAGAGCCCAATCATCTTCAAGAACCCAGAACCTGGATAAAATAATCCCAACTAGGAACATTTTATTTTCCTAATAGGATTATTTCCTTTCTGGAAGGCGTTAGGCTTCTGAATAGTCAACTAATCCCTCCCGTATAGTTAGTATCTTGTCTGAAAACTCATTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTATGCTCATTAAAACAGTTCATCGATGCTGAAAAATTGGAATGGAAAATGGAWAATGCATGATTGGAGCTGAAATTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAACCTGAGCAATTGAGAATTCAAGAATTTTATTATTGGGGTAAATATCTATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTGCTGAGCATTCTAGAAATACATTTTTCTAGAAGGGTCTAGCACAAGAATGGTCGGAAAAGGATGAATACTACAGTAATCCAAGAAAAACAGCATAGAAATTTCTAAACCTAAAATCTCAGATCAAATTTTTGGCTTACATTTCGGAAGATATTAAAAACTACCGTACACCAAAACAATAATAATTTCTGAATCTAGAAAACATATTCAAACTGAATTTAGAAGTCAAATTTCAGATTCTCCATAGTCAAAAACTCTCAATTTCCTTTTTTTTTCAAAATTATAAGAAGTTTTCAAAATTTGAAGGTTTGATCTCTCTAGGGATGAGTAATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGGTGTTAAGGATGAGATT</pcr_primer_p1>
		<pcr_primer_p2>GTTTTCCAGATTTCTTCAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTATGCTCATTAAAACAGTTCATCGATGCTGAAAAATTGGAATGGAAAATGGATAATGCATGATTGGAGCTGAAATTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTATGCTCATTAAAACAGTTCATCGATGCTGAAAAATTGGAATGGAAAATGGAWAATGCATGATTGGAGCTGAAATTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15816</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>120385</contig_pos>
        <strand>+</strand>
        <context>GGTAAATATC[G/T]ATTGGAGGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAACCTGAGCAATTGAGAATTCAAGAATTTTATTATTGGGGTAAATATC</left_flank>
        <right_flank>ATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTGCTGAGCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGGGACCTCTATTTCATTTTCGGACCTCTAAACTAGAAGAGAGCCCAATCATCTTCAAGAACCCAGAACCTGGATAAAATAATCCCAACTAGGAACATTTTATTTTCCTAATAGGATTATTTCCTTTCTGGAAGGCGTTAGGCTTCTGAATAGTCAACTAATCCCTCCCGTATAGTTAGTATCTTGTCTGAAAACTCATTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTATGCTCATTAAAACAGTTCATCGATGCTGAAAAATTGGAATGGAAAATGGATAATGCATGATTGGAGCTGAAATTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAACCTGAGCAATTGAGAATTCAAGAATTTTATTATTGGGGTAAATATCTATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTGCTGAGCATTCTAGAAATACATTTTTCTAGAAGGGTCTAGCACAAGAATGGTCGGAAAAGGATGAATACTACAGTAATCCAAGAAAAACAGCATAGAAATTTCTAAACCTAAAATCTCAGATCAAATTTTTGGCTTACATTTCGGAAGATATTAAAAACTACCGTACACCAAAACAATAATAATTTCTGAATCTAGAAAACATATTCAAACTGAATTTAGAAGTCAAATTTCAGATTCTCCATAGTCAAAAACTCTCAATTTCCTTTTTTTTTCAAAATTATAAGAAGTTTTCAAAATTTGAAGGTTTGATCTCTCTAGGGATGAGTAATGGGAAGAAACATGGAAAATTTGATCATCTGCAAAAAAGATTCTTTTAATAAATCTGAGCATTTGAGGATTCCAGAAATTCTTTTTTCTGGAAAACAATTGAGCAGGAATCCGAAAAAAAATTGATCGGA</canonical>
            <polymorphic>CTTGGGACCTCTATTTCATTTTCGGACCTCTAAACTAGAAGAGAGCCCAATCATCTTCAAGAACCCAGAACCTGGATAAAATAATCCCAACTAGGAACATTTTATTTTCCTAATAGGATTATTTCCTTTCTGGAAGGCGTTAGGCTTCTGAATAGTCAACTAATCCCTCCCGTATAGTTAGTATCTTGTCTGAAAACTCATTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTATGCTCATTAAAACAGTTCATCGATGCTGAAAAATTGGAATGGAAAATGGATAATGCATGATTGGAGCTGAAATTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAACCTGAGCAATTGAGAATTCAAGAATTTTATTATTGGGGTAAATATCKATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTGCTGAGCATTCTAGAAATACATTTTTCTAGAAGGGTCTAGCACAAGAATGGTCGGAAAAGGATGAATACTACAGTAATCCAAGAAAAACAGCATAGAAATTTCTAAACCTAAAATCTCAGATCAAATTTTTGGCTTACATTTCGGAAGATATTAAAAACTACCGTACACCAAAACAATAATAATTTCTGAATCTAGAAAACATATTCAAACTGAATTTAGAAGTCAAATTTCAGATTCTCCATAGTCAAAAACTCTCAATTTCCTTTTTTTTTCAAAATTATAAGAAGTTTTCAAAATTTGAAGGTTTGATCTCTCTAGGGATGAGTAATGGGAAGAAACATGGAAAATTTGATCATCTGCAAAAAAGATTCTTTTAATAAATCTGAGCATTTGAGGATTCCAGAAATTCTTTTTTCTGGAAAACAATTGAGCAGGAATCCGAAAAAAAATTGATCGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGATTTTGAAGTTTTGATT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTCTATGCTGTTTTTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAACCTGAGCAATTGAGAATTCAAGAATTTTATTATTGGGGTAAATATCTATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTGCTGAGCATTCTAGAAATACATTTTTCTAGAAGGGTCTAGCACAAGAATGGTCGGAAAAGGATGAATACTACAGTAATCCAAGAAAAACAGCATAGAAATTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAACCTGAGCAATTGAGAATTCAAGAATTTTATTATTGGGGTAAATATCKATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTGCTGAGCATTCTAGAAATACATTTTTCTAGAAGGGTCTAGCACAAGAATGGTCGGAAAAGGATGAATACTACAGTAATCCAAGAAAAACAGCATAGAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15817</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>120428</contig_pos>
        <strand>+</strand>
        <context>CAGAAAATTG[C/T]YGAGCATTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATATCTATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTG</left_flank>
        <right_flank>TGAGCATTCTAGAAATACATTTTTCTAGAAGGGTCTAGCACAAGAATGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCCCAATCATCTTCAAGAACCCAGAACCTGGATAAAATAATCCCAACTAGGAACATTTTATTTTCCTAATAGGATTATTTCCTTTCTGGAAGGCGTTAGGCTTCTGAATAGTCAACTAATCCCTCCCGTATAGTTAGTATCTTGTCTGAAAACTCATTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTATGCTCATTAAAACAGTTCATCGATGCTGAAAAATTGGAATGGAAAATGGATAATGCATGATTGGAGCTGAAATTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAACCTGAGCAATTGAGAATTCAAGAATTTTATTATTGGGGTAAATATCTATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTGCTGAGCATTCTAGAAATACATTTTTCTAGAAGGGTCTAGCACAAGAATGGTCGGAAAAGGATGAATACTACAGTAATCCAAGAAAAACAGCATAGAAATTTCTAAACCTAAAATCTCAGATCAAATTTTTGGCTTACATTTCGGAAGATATTAAAAACTACCGTACACCAAAACAATAATAATTTCTGAATCTAGAAAACATATTCAAACTGAATTTAGAAGTCAAATTTCAGATTCTCCATAGTCAAAAACTCTCAATTTCCTTTTTTTTTCAAAATTATAAGAAGTTTTCAAAATTTGAAGGTTTGATCTCTCTAGGGATGAGTAATGGGAAGAAACATGGAAAATTTGATCATCTGCAAAAAAGATTCTTTTAATAAATCTGAGCATTTGAGGATTCCAGAAATTCTTTTTTCTGGAAAACAATTGAGCAGGAATCCGAAAAAAAATTGATCGGAGGATTTGAGAATCCTAGAAATCCATTATAGGAGAGATCAGAGG</canonical>
            <polymorphic>AGCCCAATCATCTTCAAGAACCCAGAACCTGGATAAAATAATCCCAACTAGGAACATTTTATTTTCCTAATAGGATTATTTCCTTTCTGGAAGGCGTTAGGCTTCTGAATAGTCAACTAATCCCTCCCGTATAGTTAGTATCTTGTCTGAAAACTCATTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTATGCTCATTAAAACAGTTCATCGATGCTGAAAAATTGGAATGGAAAATGGATAATGCATGATTGGAGCTGAAATTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAACCTGAGCAATTGAGAATTCAAGAATTTTATTATTGGGGTAAATATCTATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTGYTGAGCATTCTAGAAATACATTTTTCTAGAAGGGTCTAGCACAAGAATGGTCGGAAAAGGATGAATACTACAGTAATCCAAGAAAAACAGCATAGAAATTTCTAAACCTAAAATCTCAGATCAAATTTTTGGCTTACATTTCGGAAGATATTAAAAACTACCGTACACCAAAACAATAATAATTTCTGAATCTAGAAAACATATTCAAACTGAATTTAGAAGTCAAATTTCAGATTCTCCATAGTCAAAAACTCTCAATTTCCTTTTTTTTTCAAAATTATAAGAAGTTTTCAAAATTTGAAGGTTTGATCTCTCTAGGGATGAGTAATGGGAAGAAACATGGAAAATTTGATCATCTGCAAAAAAGATTCTTTTAATAAATCTGAGCATTTGAGGATTCCAGAAATTCTTTTTTCTGGAAAACAATTGAGCAGGAATCCGAAAAAAAATTGATCGGAGGATTTGAGAATCCTAGAAATCCATTATAGGAGAGATCAGAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCTNAGC</site>
                <isoschizomers>
                    <enzyme>BlpI</enzyme>
                    <enzyme>Bpu1102I</enzyme>
                    <enzyme>Bsp1720I</enzyme>
                    <enzyme>CelII</enzyme>
                    <enzyme>EspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>412 268 118 114 88</canonical_bands>
                <polymorphic_bands>412 268 202 118</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGATTTTGAAGTTTTGATT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTCTATGCTGTTTTTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAACCTGAGCAATTGAGAATTCAAGAATTTTATTATTGGGGTAAATATCTATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTGCTGAGCATTCTAGAAATACATTTTTCTAGAAGGGTCTAGCACAAGAATGGTCGGAAAAGGATGAATACTACAGTAATCCAAGAAAAACAGCATAGAAATTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAACCTGAGCAATTGAGAATTCAAGAATTTTATTATTGGGGTAAATATCTATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTGYTGAGCATTCTAGAAATACATTTTTCTAGAAGGGTCTAGCACAAGAATGGTCGGAAAAGGATGAATACTACAGTAATCCAAGAAAAACAGCATAGAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15818</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>120429</contig_pos>
        <strand>+</strand>
        <context>AGAAAATTGY[C/T]GAGCATTCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATATCTATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTGC</left_flank>
        <right_flank>GAGCATTCTAGAAATACATTTTTCTAGAAGGGTCTAGCACAAGAATGGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCCAATCATCTTCAAGAACCCAGAACCTGGATAAAATAATCCCAACTAGGAACATTTTATTTTCCTAATAGGATTATTTCCTTTCTGGAAGGCGTTAGGCTTCTGAATAGTCAACTAATCCCTCCCGTATAGTTAGTATCTTGTCTGAAAACTCATTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTATGCTCATTAAAACAGTTCATCGATGCTGAAAAATTGGAATGGAAAATGGATAATGCATGATTGGAGCTGAAATTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAACCTGAGCAATTGAGAATTCAAGAATTTTATTATTGGGGTAAATATCTATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTGCTGAGCATTCTAGAAATACATTTTTCTAGAAGGGTCTAGCACAAGAATGGTCGGAAAAGGATGAATACTACAGTAATCCAAGAAAAACAGCATAGAAATTTCTAAACCTAAAATCTCAGATCAAATTTTTGGCTTACATTTCGGAAGATATTAAAAACTACCGTACACCAAAACAATAATAATTTCTGAATCTAGAAAACATATTCAAACTGAATTTAGAAGTCAAATTTCAGATTCTCCATAGTCAAAAACTCTCAATTTCCTTTTTTTTTCAAAATTATAAGAAGTTTTCAAAATTTGAAGGTTTGATCTCTCTAGGGATGAGTAATGGGAAGAAACATGGAAAATTTGATCATCTGCAAAAAAGATTCTTTTAATAAATCTGAGCATTTGAGGATTCCAGAAATTCTTTTTTCTGGAAAACAATTGAGCAGGAATCCGAAAAAAAATTGATCGGAGGATTTGAGAATCCTAGAAATCCATTATAGGAGAGATCAGAGGA</canonical>
            <polymorphic>GCCCAATCATCTTCAAGAACCCAGAACCTGGATAAAATAATCCCAACTAGGAACATTTTATTTTCCTAATAGGATTATTTCCTTTCTGGAAGGCGTTAGGCTTCTGAATAGTCAACTAATCCCTCCCGTATAGTTAGTATCTTGTCTGAAAACTCATTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTATGCTCATTAAAACAGTTCATCGATGCTGAAAAATTGGAATGGAAAATGGATAATGCATGATTGGAGCTGAAATTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAACCTGAGCAATTGAGAATTCAAGAATTTTATTATTGGGGTAAATATCTATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTGCYGAGCATTCTAGAAATACATTTTTCTAGAAGGGTCTAGCACAAGAATGGTCGGAAAAGGATGAATACTACAGTAATCCAAGAAAAACAGCATAGAAATTTCTAAACCTAAAATCTCAGATCAAATTTTTGGCTTACATTTCGGAAGATATTAAAAACTACCGTACACCAAAACAATAATAATTTCTGAATCTAGAAAACATATTCAAACTGAATTTAGAAGTCAAATTTCAGATTCTCCATAGTCAAAAACTCTCAATTTCCTTTTTTTTTCAAAATTATAAGAAGTTTTCAAAATTTGAAGGTTTGATCTCTCTAGGGATGAGTAATGGGAAGAAACATGGAAAATTTGATCATCTGCAAAAAAGATTCTTTTAATAAATCTGAGCATTTGAGGATTCCAGAAATTCTTTTTTCTGGAAAACAATTGAGCAGGAATCCGAAAAAAAATTGATCGGAGGATTTGAGAATCCTAGAAATCCATTATAGGAGAGATCAGAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCTNAGC</site>
                <isoschizomers>
                    <enzyme>BlpI</enzyme>
                    <enzyme>Bpu1102I</enzyme>
                    <enzyme>Bsp1720I</enzyme>
                    <enzyme>CelII</enzyme>
                    <enzyme>EspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>411 268 119 114 88</canonical_bands>
                <polymorphic_bands>411 268 202 119</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGATTTTGAAGTTTTGATT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTCTATGCTGTTTTTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAACCTGAGCAATTGAGAATTCAAGAATTTTATTATTGGGGTAAATATCTATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTGCTGAGCATTCTAGAAATACATTTTTCTAGAAGGGTCTAGCACAAGAATGGTCGGAAAAGGATGAATACTACAGTAATCCAAGAAAAACAGCATAGAAATTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAACCTGAGCAATTGAGAATTCAAGAATTTTATTATTGGGGTAAATATCTATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTGCYGAGCATTCTAGAAATACATTTTTCTAGAAGGGTCTAGCACAAGAATGGTCGGAAAAGGATGAATACTACAGTAATCCAAGAAAAACAGCATAGAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15827</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>267044</contig_pos>
        <strand>+</strand>
        <context>ATCCCACCTT[C/T]CGTCAATTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAAATAAGGCTATTTTCAGACTGCGCTTCTCCGCCTGCAATCCCACCTT</left_flank>
        <right_flank>CGTCAATTCGAGAAATCCTATCCACTGCATATCAAAAACCTGAGTCTCCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATAAACGTAAAGAACCACTGTCGGCGACTTGAAAAAAAGGCTGTCAGGTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCATTTTTTTTTGAATTTTCTTCCTTTTCAACACCGTTTTTCGGGAATTTCGGATTTTCTTTGAATTTTTTTGCAATAATATTTGAAAAACAAATAAATTTTAACACAATTTAATGCAAAAAAAATTCTGGTCGGAGTCCCCCTTTAAGCTTAAAAGCTTCTGTGTTAAATTTTTTTGAGAAATCAAAATGTCTATTTGGCATCGATAAGCATTTCCTTTTTCTTAATAAGAACACTTTATATAGCATAAAGATTTCTGAAGATTCCCAAAAACTTTTTTAACATCTCAAAGACCTTTTCAAAGAATTGATATTTCTCTAATGGATGTTTATCTCAAGACAAGGTTAAATATATCCTAAATAAGGCTATTTTCAGACTGCGCTTCTCCGCCTGCAATCCCACCTTTCGTCAATTCGAGAAATCCTATCCACTGCATATCAAAAACCTGAGTCTCCGAAAGAAAGGCTTCCAGATCGATGACACCATCTACCGACTTGGAATATATCGGACTTACGAAGCATGCACTTACATGGCAATCGACTATAACCGAGAGGGAGGCGTGCAGTACGACACTGCGATTTTCGATCGATATGGTATTAATGAGCCCAAAAAAATATATAAGGGTTCGTTAGAAAGAGATATGAGGGAGCTGGAAAAAGCGAAGAAGAAATTGGAGAAACTTCGTAAAGTGGTGAAAGGCAATGCTGAGCGGATCAAGGAAAAAGGAGAATTGACAAAGAAGATTCGGATCATCAATGAAAAAGTTGCGATTTCAAAATCAAAGTTTGAGGAATTCATTCTACTAAAAATCTCGGGAAAAAAGCACAATGAGCAGCTGATGGTGAACTACACCGAACCCATCCAGGAGGCTTTCAAGGATCTTATGGATAGGATTTTTGGTGGAAG</canonical>
            <polymorphic>GTATAAACGTAAAGAACCACTGTCGGCGACTTGAAAAAAAGGCTGTCAGGTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCATTTTTTTTTGAATTTTCTTCCTTTTCAACACCGTTTTTCGGGAATTTCGGATTTTCTTTGAATTTTTTTGCAATAATATTTGAAAAACAAATAAATTTTAACACAATTTAATGCAAAAAAAATTCTGGTCGGAGTCCCCCTTTAAGCTTAAAAGCTTCTGTGTTAAATTTTTTTGAGAAATCAAAATGTCTATTTGGCATCGATAAGCATTTCCTTTTTCTTAATAAGAACACTTTATATAGCATAAAGATTTCTGAAGATTCCCAAAAACTTTTTTAACATCTCAAAGACCTTTTCAAAGAATTGATATTTCTCTAATGGATGTTTATCTCAAGACAAGGTTAAATATATCCTAAATAAGGCTATTTTCAGACTGCGCTTCTCCGCCTGCAATCCCACCTTYCGTCAATTCGAGAAATCCTATCCACTGCATATCAAAAACCTGAGTCTCCGAAAGAAAGGCTTCCAGATCGATGACACCATCTACCGACTTGGAATATATCGGACTTACGAAGCATGCACTTACATGGCAATCGACTATAACCGAGAGGGAGGCGTGCAGTACGACACTGCGATTTTCGATCGATATGGTATTAATGAGCCCAAAAAAATATATAAGGGTTCGTTAGAAAGAGATATGAGGGAGCTGGAAAAAGCGAAGAAGAAATTGGAGAAACTTCGTAAAGTGGTGAAAGGCAATGCTGAGCGGATCAAGGAAAAAGGAGAATTGACAAAGAAGATTCGGATCATCAATGAAAAAGTTGCGATTTCAAAATCAAAGTTTGAGGAATTCATTCTACTAAAAATCTCGGGAAAAAAGCACAATGAGCAGCTGATGGTGAACTACACCGAACCCATCCAGGAGGCTTTCAAGGATCTTATGGATAGGATTTTTGGTGGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGAAGATTCCCAAAAACTT</pcr_primer_p1>
		<pcr_primer_p2>GATATATTCCAAGTCGGTAGATG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTGAAGATTCCCAAAAACTTTTTTAACATCTCAAAGACCTTTTCAAAGAATTGATATTTCTCTAATGGATGTTTATCTCAAGACAAGGTTAAATATATCCTAAATAAGGCTATTTTCAGACTGCGCTTCTCCGCCTGCAATCCCACCTTTCGTCAATTCGAGAAATCCTATCCACTGCATATCAAAAACCTGAGTCTCCGAAAGAAAGGCTTCCAGATCGATGACACCATCTACCGACTTGGAATATATC</canonical_amplicon>
		<polymorphic_amplicon>TCTGAAGATTCCCAAAAACTTTTTTAACATCTCAAAGACCTTTTCAAAGAATTGATATTTCTCTAATGGATGTTTATCTCAAGACAAGGTTAAATATATCCTAAATAAGGCTATTTTCAGACTGCGCTTCTCCGCCTGCAATCCCACCTTYCGTCAATTCGAGAAATCCTATCCACTGCATATCAAAAACCTGAGTCTCCGAAAGAAAGGCTTCCAGATCGATGACACCATCTACCGACTTGGAATATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15828</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>267149</contig_pos>
        <strand>+</strand>
        <context>TATATCGGAC[C/T]TACGAAGCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGGCTTCCAGATCGATGACACCATCTACCGACTTGGAATATATCGGAC</left_flank>
        <right_flank>TACGAAGCATGCACTTACATGGCAATCGACTATAACCGAGAGGGAGGCGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAATTTTCTTCCTTTTCAACACCGTTTTTCGGGAATTTCGGATTTTCTTTGAATTTTTTTGCAATAATATTTGAAAAACAAATAAATTTTAACACAATTTAATGCAAAAAAAATTCTGGTCGGAGTCCCCCTTTAAGCTTAAAAGCTTCTGTGTTAAATTTTTTTGAGAAATCAAAATGTCTATTTGGCATCGATAAGCATTTCCTTTTTCTTAATAAGAACACTTTATATAGCATAAAGATTTCTGAAGATTCCCAAAAACTTTTTTAACATCTCAAAGACCTTTTCAAAGAATTGATATTTCTCTAATGGATGTTTATCTCAAGACAAGGTTAAATATATCCTAAATAAGGCTATTTTCAGACTGCGCTTCTCCGCCTGCAATCCCACCTTTCGTCAATTCGAGAAATCCTATCCACTGCATATCAAAAACCTGAGTCTCCGAAAGAAAGGCTTCCAGATCGATGACACCATCTACCGACTTGGAATATATCGGACTTACGAAGCATGCACTTACATGGCAATCGACTATAACCGAGAGGGAGGCGTGCAGTACGACACTGCGATTTTCGATCGATATGGTATTAATGAGCCCAAAAAAATATATAAGGGTTCGTTAGAAAGAGATATGAGGGAGCTGGAAAAAGCGAAGAAGAAATTGGAGAAACTTCGTAAAGTGGTGAAAGGCAATGCTGAGCGGATCAAGGAAAAAGGAGAATTGACAAAGAAGATTCGGATCATCAATGAAAAAGTTGCGATTTCAAAATCAAAGTTTGAGGAATTCATTCTACTAAAAATCTCGGGAAAAAAGCACAATGAGCAGCTGATGGTGAACTACACCGAACCCATCCAGGAGGCTTTCAAGGATCTTATGGATAGGATTTTTGGTGGAAGAGGACATCAGATCCATGTTAGACATCTCGAGATTCTTGGCGGATTCGAAAATCCGCTCAAAACCGTAAAAATGCAAGTGAAGCACTTGGATATGGAATATTTCAC</canonical>
            <polymorphic>TGAATTTTCTTCCTTTTCAACACCGTTTTTCGGGAATTTCGGATTTTCTTTGAATTTTTTTGCAATAATATTTGAAAAACAAATAAATTTTAACACAATTTAATGCAAAAAAAATTCTGGTCGGAGTCCCCCTTTAAGCTTAAAAGCTTCTGTGTTAAATTTTTTTGAGAAATCAAAATGTCTATTTGGCATCGATAAGCATTTCCTTTTTCTTAATAAGAACACTTTATATAGCATAAAGATTTCTGAAGATTCCCAAAAACTTTTTTAACATCTCAAAGACCTTTTCAAAGAATTGATATTTCTCTAATGGATGTTTATCTCAAGACAAGGTTAAATATATCCTAAATAAGGCTATTTTCAGACTGCGCTTCTCCGCCTGCAATCCCACCTTTCGTCAATTCGAGAAATCCTATCCACTGCATATCAAAAACCTGAGTCTCCGAAAGAAAGGCTTCCAGATCGATGACACCATCTACCGACTTGGAATATATCGGACYTACGAAGCATGCACTTACATGGCAATCGACTATAACCGAGAGGGAGGCGTGCAGTACGACACTGCGATTTTCGATCGATATGGTATTAATGAGCCCAAAAAAATATATAAGGGTTCGTTAGAAAGAGATATGAGGGAGCTGGAAAAAGCGAAGAAGAAATTGGAGAAACTTCGTAAAGTGGTGAAAGGCAATGCTGAGCGGATCAAGGAAAAAGGAGAATTGACAAAGAAGATTCGGATCATCAATGAAAAAGTTGCGATTTCAAAATCAAAGTTTGAGGAATTCATTCTACTAAAAATCTCGGGAAAAAAGCACAATGAGCAGCTGATGGTGAACTACACCGAACCCATCCAGGAGGCTTTCAAGGATCTTATGGATAGGATTTTTGGTGGAAGAGGACATCAGATCCATGTTAGACATCTCGAGATTCTTGGCGGATTCGAAAATCCGCTCAAAACCGTAAAAATGCAAGTGAAGCACTTGGATATGGAATATTTCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATATCAAAAACCTGAGTCTCC</pcr_primer_p1>
		<pcr_primer_p2>GAAGTTTCTCCAATTTCTTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATATCAAAAACCTGAGTCTCCGAAAGAAAGGCTTCCAGATCGATGACACCATCTACCGACTTGGAATATATCGGACTTACGAAGCATGCACTTACATGGCAATCGACTATAACCGAGAGGGAGGCGTGCAGTACGACACTGCGATTTTCGATCGATATGGTATTAATGAGCCCAAAAAAATATATAAGGGTTCGTTAGAAAGAGATATGAGGGAGCTGGAAAAAGCGAAGAAGAAATTGGAGAAACTTC</canonical_amplicon>
		<polymorphic_amplicon>CATATCAAAAACCTGAGTCTCCGAAAGAAAGGCTTCCAGATCGATGACACCATCTACCGACTTGGAATATATCGGACYTACGAAGCATGCACTTACATGGCAATCGACTATAACCGAGAGGGAGGCGTGCAGTACGACACTGCGATTTTCGATCGATATGGTATTAATGAGCCCAAAAAAATATATAAGGGTTCGTTAGAAAGAGATATGAGGGAGCTGGAAAAAGCGAAGAAGAAATTGGAGAAACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15831</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>270988</contig_pos>
        <strand>+</strand>
        <context>TCTTTTAAAT[A/T]TCGAAATATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTTTTCCAGAAATCTTCAGGAAATTCATTTTCCATTTTTTCTTTTAAAT</left_flank>
        <right_flank>TCGAAATATGAAAAAAGAGGAAAAATGCCAATTTTTATGTTCATAAGACC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCTGGAAATCTTCCACATCATCGATTCTCAATCTTCGAATATTGACTTTTTCAAATCTTCCAAATAGAAAATCCAAAAATTTGAGCTCAGCTTCTCCTTGGGTTATCCCTATTGGCACTTTCTTTTCCCATCGATTGATTAGATCCACTTTTCGAAAAAATAAATTTCCAAAATGTTTTCGTTTCGAAATTTCCTCAATTTCTTTTTTCGACGGTGGAGATGAGATCCAAAAATTCCAGAATTCATAAAAATCGAAAATCACGGTATCTATAGTTAGAGATAAGGGTTCCAATCGAAAATAATCCAATTTCAGGGGTACTGTAGCTTCAATAGAGCGAATTTGAGGAATATGAAGGGATAGAGAGGCTCTGAAATTTTTTAAAAATTAAATTTTTTTTTTGATCTACACATACTCACCGTTGATCAAATCTCAAATATTTCAGCAGGTTTTTCCAGAAATCTTCAGGAAATTCATTTTCCATTTTTTCTTTTAAATATCGAAATATGAAAAAAGAGGAAAAATGCCAATTTTTATGTTCATAAGACCCATAAATAGAGACGCAGACATAGAAAATAATCAAATTTTGAAATTTTTCGCAATTCAGAAATAGTATAGCTTGTTATCAGTTGGCACAAAAAGTCGAAAAATCAAAAAATCGAATTTCAAAAAGTTTCAGAATTGTTTAGGAGCTTCAAGACCAAAAAATGATTTTACATAAGGTTCTGAAAATCAAAAAATTTTTGAAATATTTACTGAATTTCCTAGAATTTCTGGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTC</canonical>
            <polymorphic>TCTTCTGGAAATCTTCCACATCATCGATTCTCAATCTTCGAATATTGACTTTTTCAAATCTTCCAAATAGAAAATCCAAAAATTTGAGCTCAGCTTCTCCTTGGGTTATCCCTATTGGCACTTTCTTTTCCCATCGATTGATTAGATCCACTTTTCGAAAAAATAAATTTCCAAAATGTTTTCGTTTCGAAATTTCCTCAATTTCTTTTTTCGACGGTGGAGATGAGATCCAAAAATTCCAGAATTCATAAAAATCGAAAATCACGGTATCTATAGTTAGAGATAAGGGTTCCAATCGAAAATAATCCAATTTCAGGGGTACTGTAGCTTCAATAGAGCGAATTTGAGGAATATGAAGGGATAGAGAGGCTCTGAAATTTTTTAAAAATTAAATTTTTTTTTTGATCTACACATACTCACCGTTGATCAAATCTCAAATATTTCAGCAGGTTTTTCCAGAAATCTTCAGGAAATTCATTTTCCATTTTTTCTTTTAAATWTCGAAATATGAAAAAAGAGGAAAAATGCCAATTTTTATGTTCATAAGACCCATAAATAGAGACGCAGACATAGAAAATAATCAAATTTTGAAATTTTTCGCAATTCAGAAATAGTATAGCTTGTTATCAGTTGGCACAAAAAGTCGAAAAATCAAAAAATCGAATTTCAAAAAGTTTCAGAATTGTTTAGGAGCTTCAAGACCAAAAAATGATTTTACATAAGGTTCTGAAAATCAAAAAATTTTTGAAATATTTACTGAATTTCCTAGAATTTCTGGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAGAGCGAATTTGAGGAATA</pcr_primer_p1>
		<pcr_primer_p2>ATTATTTTCTATGTCTGCGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATAGAGCGAATTTGAGGAATATGAAGGGATAGAGAGGCTCTGAAATTTTTTAAAAATTAAATTTTTTTTTTGATCTACACATACTCACCGTTGATCAAATCTCAAATATTTCAGCAGGTTTTTCCAGAAATCTTCAGGAAATTCATTTTCCATTTTTTCTTTTAAATATCGAAATATGAAAAAAGAGGAAAAATGCCAATTTTTATGTTCATAAGACCCATAAATAGAGACGCAGACATAGAAAATAAT</canonical_amplicon>
		<polymorphic_amplicon>AATAGAGCGAATTTGAGGAATATGAAGGGATAGAGAGGCTCTGAAATTTTTTAAAAATTAAATTTTTTTTTTGATCTACACATACTCACCGTTGATCAAATCTCAAATATTTCAGCAGGTTTTTCCAGAAATCTTCAGGAAATTCATTTTCCATTTTTTCTTTTAAATWTCGAAATATGAAAAAAGAGGAAAAATGCCAATTTTTATGTTCATAAGACCCATAAATAGAGACGCAGACATAGAAAATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15859</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>270848</contig_pos>
        <strand>+</strand>
        <context>AATATGAAGG[G/T]ATAGAGAGGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTCAGGGGTACTGTAGCTTCAATAGAGCGAATTTGAGGAATATGAAGG</left_flank>
        <right_flank>ATAGAGAGGCTCTGAAATTTTTTAAAAATTAAATTTTTTTTTTGATCTAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATTCTCAATTTCGATTTCCAATTTTTCCCATGGACTTGGACTCAGGAAATCGAAAATTTTTCGGAACTCTTGAAAATTCTGAATAGCCAAATGCAGCTCCTTCACCAAAATTCTACTTCTCATTTTCTCTGGAATTCTCTTCTGGAAATCTTCCACATCATCGATTCTCAATCTTCGAATATTGACTTTTTCAAATCTTCCAAATAGAAAATCCAAAAATTTGAGCTCAGCTTCTCCTTGGGTTATCCCTATTGGCACTTTCTTTTCCCATCGATTGATTAGATCCACTTTTCGAAAAAATAAATTTCCAAAATGTTTTCGTTTCGAAATTTCCTCAATTTCTTTTTTCGACGGTGGAGATGAGATCCAAAAATTCCAGAATTCATAAAAATCGAAAATCACGGTATCTATAGTTAGAGATAAGGGTTCCAATCGAAAATAATCCAATTTCAGGGGTACTGTAGCTTCAATAGAGCGAATTTGAGGAATATGAAGGGATAGAGAGGCTCTGAAATTTTTTAAAAATTAAATTTTTTTTTTGATCTACACATACTCACCGTTGATCAAATCTCAAATATTTCAGCAGGTTTTTCCAGAAATCTTCAGGAAATTCATTTTCCATTTTTTCTTTTAAATATCGAAATATGAAAAAAGAGGAAAAATGCCAATTTTTATGTTCATAAGACCCATAAATAGAGACGCAGACATAGAAAATAATCAAATTTTGAAATTTTTCGCAATTCAGAAATAGTATAGCTTGTTATCAGTTGGCACAAAAAGTCGAAAAATCAAAAAATCGAATTTCAAAAAGTTTCAGAATTGTTTAGGAGCTTCAAGACCAAAAAATGATTTTACATAAGGTTCTGAAAATCAAAAAATTTTTGAAATATTTACTGAATTTCCTAGAATTTCTGGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAA</canonical>
            <polymorphic>CAAATTCTCAATTTCGATTTCCAATTTTTCCCATGGACTTGGACTCAGGAAATCGAAAATTTTTCGGAACTCTTGAAAATTCTGAATAGCCAAATGCAGCTCCTTCACCAAAATTCTACTTCTCATTTTCTCTGGAATTCTCTTCTGGAAATCTTCCACATCATCGATTCTCAATCTTCGAATATTGACTTTTTCAAATCTTCCAAATAGAAAATCCAAAAATTTGAGCTCAGCTTCTCCTTGGGTTATCCCTATTGGCACTTTCTTTTCCCATCGATTGATTAGATCCACTTTTCGAAAAAATAAATTTCCAAAATGTTTTCGTTTCGAAATTTCCTCAATTTCTTTTTTCGACGGTGGAGATGAGATCCAAAAATTCCAGAATTCATAAAAATCGAAAATCACGGTATCTATAGTTAGAGATAAGGGTTCCAATCGAAAATAATCCAATTTCAGGGGTACTGTAGCTTCAATAGAGCGAATTTGAGGAATATGAAGGKATAGAGAGGCTCTGAAATTTTTTAAAAATTAAATTTTTTTTTTGATCTACACATACTCACCGTTGATCAAATCTCAAATATTTCAGCAGGTTTTTCCAGAAATCTTCAGGAAATTCATTTTCCATTTTTTCTTTTAAATATCGAAATATGAAAAAAGAGGAAAAATGCCAATTTTTATGTTCATAAGACCCATAAATAGAGACGCAGACATAGAAAATAATCAAATTTTGAAATTTTTCGCAATTCAGAAATAGTATAGCTTGTTATCAGTTGGCACAAAAAGTCGAAAAATCAAAAAATCGAATTTCAAAAAGTTTCAGAATTGTTTAGGAGCTTCAAGACCAAAAAATGATTTTACATAAGGTTCTGAAAATCAAAAAATTTTTGAAATATTTACTGAATTTCCTAGAATTTCTGGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGATGAGATCCAAAAATTC</pcr_primer_p1>
		<pcr_primer_p2>CCTGAAGATTTCTGGAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGAGATGAGATCCAAAAATTCCAGAATTCATAAAAATCGAAAATCACGGTATCTATAGTTAGAGATAAGGGTTCCAATCGAAAATAATCCAATTTCAGGGGTACTGTAGCTTCAATAGAGCGAATTTGAGGAATATGAAGGGATAGAGAGGCTCTGAAATTTTTTAAAAATTAAATTTTTTTTTTGATCTACACATACTCACCGTTGATCAAATCTCAAATATTTCAGCAGGTTTTTCCAGAAATCTTCAGG</canonical_amplicon>
		<polymorphic_amplicon>GGAGATGAGATCCAAAAATTCCAGAATTCATAAAAATCGAAAATCACGGTATCTATAGTTAGAGATAAGGGTTCCAATCGAAAATAATCCAATTTCAGGGGTACTGTAGCTTCAATAGAGCGAATTTGAGGAATATGAAGGKATAGAGAGGCTCTGAAATTTTTTAAAAATTAAATTTTTTTTTTGATCTACACATACTCACCGTTGATCAAATCTCAAATATTTCAGCAGGTTTTTCCAGAAATCTTCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15860</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>270812</contig_pos>
        <strand>+</strand>
        <context>CAGGGGTACT[G/T]TAGCTTCAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAGTTAGAGATAAGGGTTCCAATCGAAAATAATCCAATTTCAGGGGTACT</left_flank>
        <right_flank>TAGCTTCAATAGAGCGAATTTGAGGAATATGAAGGGATAGAGAGGCTCTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAGAAAAAACTTATTTTTTCGAGCTCCAAATTTTTCAAATTCTCAATTTCGATTTCCAATTTTTCCCATGGACTTGGACTCAGGAAATCGAAAATTTTTCGGAACTCTTGAAAATTCTGAATAGCCAAATGCAGCTCCTTCACCAAAATTCTACTTCTCATTTTCTCTGGAATTCTCTTCTGGAAATCTTCCACATCATCGATTCTCAATCTTCGAATATTGACTTTTTCAAATCTTCCAAATAGAAAATCCAAAAATTTGAGCTCAGCTTCTCCTTGGGTTATCCCTATTGGCACTTTCTTTTCCCATCGATTGATTAGATCCACTTTTCGAAAAAATAAATTTCCAAAATGTTTTCGTTTCGAAATTTCCTCAATTTCTTTTTTCGACGGTGGAGATGAGATCCAAAAATTCCAGAATTCATAAAAATCGAAAATCACGGTATCTATAGTTAGAGATAAGGGTTCCAATCGAAAATAATCCAATTTCAGGGGTACTGTAGCTTCAATAGAGCGAATTTGAGGAATATGAAGGGATAGAGAGGCTCTGAAATTTTTTAAAAATTAAATTTTTTTTTTGATCTACACATACTCACCGTTGATCAAATCTCAAATATTTCAGCAGGTTTTTCCAGAAATCTTCAGGAAATTCATTTTCCATTTTTTCTTTTAAATATCGAAATATGAAAAAAGAGGAAAAATGCCAATTTTTATGTTCATAAGACCCATAAATAGAGACGCAGACATAGAAAATAATCAAATTTTGAAATTTTTCGCAATTCAGAAATAGTATAGCTTGTTATCAGTTGGCACAAAAAGTCGAAAAATCAAAAAATCGAATTTCAAAAAGTTTCAGAATTGTTTAGGAGCTTCAAGACCAAAAAATGATTTTACATAAGGTTCTGAAAATCAAAAAATTTTTGAAATATTTACTGAATTTCCTAGAATTTCTGGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTC</canonical>
            <polymorphic>CTAGAAAAAACTTATTTTTTCGAGCTCCAAATTTTTCAAATTCTCAATTTCGATTTCCAATTTTTCCCATGGACTTGGACTCAGGAAATCGAAAATTTTTCGGAACTCTTGAAAATTCTGAATAGCCAAATGCAGCTCCTTCACCAAAATTCTACTTCTCATTTTCTCTGGAATTCTCTTCTGGAAATCTTCCACATCATCGATTCTCAATCTTCGAATATTGACTTTTTCAAATCTTCCAAATAGAAAATCCAAAAATTTGAGCTCAGCTTCTCCTTGGGTTATCCCTATTGGCACTTTCTTTTCCCATCGATTGATTAGATCCACTTTTCGAAAAAATAAATTTCCAAAATGTTTTCGTTTCGAAATTTCCTCAATTTCTTTTTTCGACGGTGGAGATGAGATCCAAAAATTCCAGAATTCATAAAAATCGAAAATCACGGTATCTATAGTTAGAGATAAGGGTTCCAATCGAAAATAATCCAATTTCAGGGGTACTKTAGCTTCAATAGAGCGAATTTGAGGAATATGAAGGGATAGAGAGGCTCTGAAATTTTTTAAAAATTAAATTTTTTTTTTGATCTACACATACTCACCGTTGATCAAATCTCAAATATTTCAGCAGGTTTTTCCAGAAATCTTCAGGAAATTCATTTTCCATTTTTTCTTTTAAATATCGAAATATGAAAAAAGAGGAAAAATGCCAATTTTTATGTTCATAAGACCCATAAATAGAGACGCAGACATAGAAAATAATCAAATTTTGAAATTTTTCGCAATTCAGAAATAGTATAGCTTGTTATCAGTTGGCACAAAAAGTCGAAAAATCAAAAAATCGAATTTCAAAAAGTTTCAGAATTGTTTAGGAGCTTCAAGACCAAAAAATGATTTTACATAAGGTTCTGAAAATCAAAAAATTTTTGAAATATTTACTGAATTTCCTAGAATTTCTGGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 447 51</canonical_bands>
                <polymorphic_bands>553 447</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>403 392 98 57 50</canonical_bands>
                <polymorphic_bands>403 392 155 50</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAGATGAGATCCAAAAATTC</pcr_primer_p1>
		<pcr_primer_p2>CCTGAAGATTTCTGGAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGAGATGAGATCCAAAAATTCCAGAATTCATAAAAATCGAAAATCACGGTATCTATAGTTAGAGATAAGGGTTCCAATCGAAAATAATCCAATTTCAGGGGTACTGTAGCTTCAATAGAGCGAATTTGAGGAATATGAAGGGATAGAGAGGCTCTGAAATTTTTTAAAAATTAAATTTTTTTTTTGATCTACACATACTCACCGTTGATCAAATCTCAAATATTTCAGCAGGTTTTTCCAGAAATCTTCAGG</canonical_amplicon>
		<polymorphic_amplicon>GGAGATGAGATCCAAAAATTCCAGAATTCATAAAAATCGAAAATCACGGTATCTATAGTTAGAGATAAGGGTTCCAATCGAAAATAATCCAATTTCAGGGGTACTKTAGCTTCAATAGAGCGAATTTGAGGAATATGAAGGGATAGAGAGGCTCTGAAATTTTTTAAAAATTAAATTTTTTTTTTGATCTACACATACTCACCGTTGATCAAATCTCAAATATTTCAGCAGGTTTTTCCAGAAATCTTCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15861</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>270684</contig_pos>
        <strand>+</strand>
        <context>TTCGAAATTT[C/T]CTCAATTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCCACTTTTCGAAAAAATAAATTTCCAAAATGTTTTCGTTTCGAAATTT</left_flank>
        <right_flank>CTCAATTTCTTTTTTCGACGGTGGAGATGAGATCCAAAAATTCCAGAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAACGCGCGAAATTTGAATTTTTGGGTTAAAAAACAGCTTAAAACTTGATTTTTTGGGGGTAAAATCGCTGAAAATCAACTGAAACTATTTTTCCTGTATATCTGATTACCGTAGTTCAAGAATTTCTAGAAAAAACTTATTTTTTCGAGCTCCAAATTTTTCAAATTCTCAATTTCGATTTCCAATTTTTCCCATGGACTTGGACTCAGGAAATCGAAAATTTTTCGGAACTCTTGAAAATTCTGAATAGCCAAATGCAGCTCCTTCACCAAAATTCTACTTCTCATTTTCTCTGGAATTCTCTTCTGGAAATCTTCCACATCATCGATTCTCAATCTTCGAATATTGACTTTTTCAAATCTTCCAAATAGAAAATCCAAAAATTTGAGCTCAGCTTCTCCTTGGGTTATCCCTATTGGCACTTTCTTTTCCCATCGATTGATTAGATCCACTTTTCGAAAAAATAAATTTCCAAAATGTTTTCGTTTCGAAATTTCCTCAATTTCTTTTTTCGACGGTGGAGATGAGATCCAAAAATTCCAGAATTCATAAAAATCGAAAATCACGGTATCTATAGTTAGAGATAAGGGTTCCAATCGAAAATAATCCAATTTCAGGGGTACTGTAGCTTCAATAGAGCGAATTTGAGGAATATGAAGGGATAGAGAGGCTCTGAAATTTTTTAAAAATTAAATTTTTTTTTTGATCTACACATACTCACCGTTGATCAAATCTCAAATATTTCAGCAGGTTTTTCCAGAAATCTTCAGGAAATTCATTTTCCATTTTTTCTTTTAAATATCGAAATATGAAAAAAGAGGAAAAATGCCAATTTTTATGTTCATAAGACCCATAAATAGAGACGCAGACATAGAAAATAATCAAATTTTGAAATTTTTCGCAATTCAGAAATAGTATAGCTTGTTATCAGTTGGCACAAAAAGTCGAAAAATCAAAAAATCGAATTTCAAAAAGTTTCAGAATTGTTTAGGAGCTT</canonical>
            <polymorphic>TTCAACGCGCGAAATTTGAATTTTTGGGTTAAAAAACAGCTTAAAACTTGATTTTTTGGGGGTAAAATCGCTGAAAATCAACTGAAACTATTTTTCCTGTATATCTGATTACCGTAGTTCAAGAATTTCTAGAAAAAACTTATTTTTTCGAGCTCCAAATTTTTCAAATTCTCAATTTCGATTTCCAATTTTTCCCATGGACTTGGACTCAGGAAATCGAAAATTTTTCGGAACTCTTGAAAATTCTGAATAGCCAAATGCAGCTCCTTCACCAAAATTCTACTTCTCATTTTCTCTGGAATTCTCTTCTGGAAATCTTCCACATCATCGATTCTCAATCTTCGAATATTGACTTTTTCAAATCTTCCAAATAGAAAATCCAAAAATTTGAGCTCAGCTTCTCCTTGGGTTATCCCTATTGGCACTTTCTTTTCCCATCGATTGATTAGATCCACTTTTCGAAAAAATAAATTTCCAAAATGTTTTCGTTTCGAAATTTYCTCAATTTCTTTTTTCGACGGTGGAGATGAGATCCAAAAATTCCAGAATTCATAAAAATCGAAAATCACGGTATCTATAGTTAGAGATAAGGGTTCCAATCGAAAATAATCCAATTTCAGGGGTACTGTAGCTTCAATAGAGCGAATTTGAGGAATATGAAGGGATAGAGAGGCTCTGAAATTTTTTAAAAATTAAATTTTTTTTTTGATCTACACATACTCACCGTTGATCAAATCTCAAATATTTCAGCAGGTTTTTCCAGAAATCTTCAGGAAATTCATTTTCCATTTTTTCTTTTAAATATCGAAATATGAAAAAAGAGGAAAAATGCCAATTTTTATGTTCATAAGACCCATAAATAGAGACGCAGACATAGAAAATAATCAAATTTTGAAATTTTTCGCAATTCAGAAATAGTATAGCTTGTTATCAGTTGGCACAAAAAGTCGAAAAATCAAAAAATCGAATTTCAAAAAGTTTCAGAATTGTTTAGGAGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTTCAAATCTTCCAAATAGA</pcr_primer_p1>
		<pcr_primer_p2>GATTGGAACCCTTATCTCTAACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTTTTCAAATCTTCCAAATAGAAAATCCAAAAATTTGAGCTCAGCTTCTCCTTGGGTTATCCCTATTGGCACTTTCTTTTCCCATCGATTGATTAGATCCACTTTTCGAAAAAATAAATTTCCAAAATGTTTTCGTTTCGAAATTTCCTCAATTTCTTTTTTCGACGGTGGAGATGAGATCCAAAAATTCCAGAATTCATAAAAATCGAAAATCACGGTATCTATAGTTAGAGATAAGGGTTCCAATC</canonical_amplicon>
		<polymorphic_amplicon>CTTTTTCAAATCTTCCAAATAGAAAATCCAAAAATTTGAGCTCAGCTTCTCCTTGGGTTATCCCTATTGGCACTTTCTTTTCCCATCGATTGATTAGATCCACTTTTCGAAAAAATAAATTTCCAAAATGTTTTCGTTTCGAAATTTYCTCAATTTCTTTTTTCGACGGTGGAGATGAGATCCAAAAATTCCAGAATTCATAAAAATCGAAAATCACGGTATCTATAGTTAGAGATAAGGGTTCCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15862</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>270634</contig_pos>
        <strand>+</strand>
        <context>GATTGATTAG[A/G]TCCACTTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTCCTTGGGTTATCCCTATTGGCACTTTCTTTTCCCATCGATTGATTAG</left_flank>
        <right_flank>TCCACTTTTCGAAAAAATAAATTTCCAAAATGTTTTCGTTTCGAAATTTC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAAAGTAGAAAATTGAAGATTTCAACTCATGTACTCCTCGTGGACAATTCAACGCGCGAAATTTGAATTTTTGGGTTAAAAAACAGCTTAAAACTTGATTTTTTGGGGGTAAAATCGCTGAAAATCAACTGAAACTATTTTTCCTGTATATCTGATTACCGTAGTTCAAGAATTTCTAGAAAAAACTTATTTTTTCGAGCTCCAAATTTTTCAAATTCTCAATTTCGATTTCCAATTTTTCCCATGGACTTGGACTCAGGAAATCGAAAATTTTTCGGAACTCTTGAAAATTCTGAATAGCCAAATGCAGCTCCTTCACCAAAATTCTACTTCTCATTTTCTCTGGAATTCTCTTCTGGAAATCTTCCACATCATCGATTCTCAATCTTCGAATATTGACTTTTTCAAATCTTCCAAATAGAAAATCCAAAAATTTGAGCTCAGCTTCTCCTTGGGTTATCCCTATTGGCACTTTCTTTTCCCATCGATTGATTAGATCCACTTTTCGAAAAAATAAATTTCCAAAATGTTTTCGTTTCGAAATTTCCTCAATTTCTTTTTTCGACGGTGGAGATGAGATCCAAAAATTCCAGAATTCATAAAAATCGAAAATCACGGTATCTATAGTTAGAGATAAGGGTTCCAATCGAAAATAATCCAATTTCAGGGGTACTGTAGCTTCAATAGAGCGAATTTGAGGAATATGAAGGGATAGAGAGGCTCTGAAATTTTTTAAAAATTAAATTTTTTTTTTGATCTACACATACTCACCGTTGATCAAATCTCAAATATTTCAGCAGGTTTTTCCAGAAATCTTCAGGAAATTCATTTTCCATTTTTTCTTTTAAATATCGAAATATGAAAAAAGAGGAAAAATGCCAATTTTTATGTTCATAAGACCCATAAATAGAGACGCAGACATAGAAAATAATCAAATTTTGAAATTTTTCGCAATTCAGAAATAGTATAGCTTGTTATCAGTTGGCACAAAAAGTCG</canonical>
            <polymorphic>GAAAAAAGTAGAAAATTGAAGATTTCAACTCATGTACTCCTCGTGGACAATTCAACGCGCGAAATTTGAATTTTTGGGTTAAAAAACAGCTTAAAACTTGATTTTTTGGGGGTAAAATCGCTGAAAATCAACTGAAACTATTTTTCCTGTATATCTGATTACCGTAGTTCAAGAATTTCTAGAAAAAACTTATTTTTTCGAGCTCCAAATTTTTCAAATTCTCAATTTCGATTTCCAATTTTTCCCATGGACTTGGACTCAGGAAATCGAAAATTTTTCGGAACTCTTGAAAATTCTGAATAGCCAAATGCAGCTCCTTCACCAAAATTCTACTTCTCATTTTCTCTGGAATTCTCTTCTGGAAATCTTCCACATCATCGATTCTCAATCTTCGAATATTGACTTTTTCAAATCTTCCAAATAGAAAATCCAAAAATTTGAGCTCAGCTTCTCCTTGGGTTATCCCTATTGGCACTTTCTTTTCCCATCGATTGATTAGRTCCACTTTTCGAAAAAATAAATTTCCAAAATGTTTTCGTTTCGAAATTTCCTCAATTTCTTTTTTCGACGGTGGAGATGAGATCCAAAAATTCCAGAATTCATAAAAATCGAAAATCACGGTATCTATAGTTAGAGATAAGGGTTCCAATCGAAAATAATCCAATTTCAGGGGTACTGTAGCTTCAATAGAGCGAATTTGAGGAATATGAAGGGATAGAGAGGCTCTGAAATTTTTTAAAAATTAAATTTTTTTTTTGATCTACACATACTCACCGTTGATCAAATCTCAAATATTTCAGCAGGTTTTTCCAGAAATCTTCAGGAAATTCATTTTCCATTTTTTCTTTTAAATATCGAAATATGAAAAAAGAGGAAAAATGCCAATTTTTATGTTCATAAGACCCATAAATAGAGACGCAGACATAGAAAATAATCAAATTTTGAAATTTTTCGCAATTCAGAAATAGTATAGCTTGTTATCAGTTGGCACAAAAAGTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>498 222 177 82 21</canonical_bands>
                <polymorphic_bands>580 222 177 21</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>498 420 82</canonical_bands>
                <polymorphic_bands>580 420</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTTTCAAATCTTCCAAATAGA</pcr_primer_p1>
		<pcr_primer_p2>GATTGGAACCCTTATCTCTAACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTTTTCAAATCTTCCAAATAGAAAATCCAAAAATTTGAGCTCAGCTTCTCCTTGGGTTATCCCTATTGGCACTTTCTTTTCCCATCGATTGATTAGATCCACTTTTCGAAAAAATAAATTTCCAAAATGTTTTCGTTTCGAAATTTCCTCAATTTCTTTTTTCGACGGTGGAGATGAGATCCAAAAATTCCAGAATTCATAAAAATCGAAAATCACGGTATCTATAGTTAGAGATAAGGGTTCCAATC</canonical_amplicon>
		<polymorphic_amplicon>CTTTTTCAAATCTTCCAAATAGAAAATCCAAAAATTTGAGCTCAGCTTCTCCTTGGGTTATCCCTATTGGCACTTTCTTTTCCCATCGATTGATTAGRTCCACTTTTCGAAAAAATAAATTTCCAAAATGTTTTCGTTTCGAAATTTCCTCAATTTCTTTTTTCGACGGTGGAGATGAGATCCAAAAATTCCAGAATTCATAAAAATCGAAAATCACGGTATCTATAGTTAGAGATAAGGGTTCCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15863</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>270618</contig_pos>
        <strand>+</strand>
        <context>ACTTTCTTTT[C/T]CCATCGATTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTTGAGCTCAGCTTCTCCTTGGGTTATCCCTATTGGCACTTTCTTTT</left_flank>
        <right_flank>CCATCGATTGATTAGATCCACTTTTCGAAAAAATAAATTTCCAAAATGTT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTCAAACTTTCTAAGAAAAAAGTAGAAAATTGAAGATTTCAACTCATGTACTCCTCGTGGACAATTCAACGCGCGAAATTTGAATTTTTGGGTTAAAAAACAGCTTAAAACTTGATTTTTTGGGGGTAAAATCGCTGAAAATCAACTGAAACTATTTTTCCTGTATATCTGATTACCGTAGTTCAAGAATTTCTAGAAAAAACTTATTTTTTCGAGCTCCAAATTTTTCAAATTCTCAATTTCGATTTCCAATTTTTCCCATGGACTTGGACTCAGGAAATCGAAAATTTTTCGGAACTCTTGAAAATTCTGAATAGCCAAATGCAGCTCCTTCACCAAAATTCTACTTCTCATTTTCTCTGGAATTCTCTTCTGGAAATCTTCCACATCATCGATTCTCAATCTTCGAATATTGACTTTTTCAAATCTTCCAAATAGAAAATCCAAAAATTTGAGCTCAGCTTCTCCTTGGGTTATCCCTATTGGCACTTTCTTTTCCCATCGATTGATTAGATCCACTTTTCGAAAAAATAAATTTCCAAAATGTTTTCGTTTCGAAATTTCCTCAATTTCTTTTTTCGACGGTGGAGATGAGATCCAAAAATTCCAGAATTCATAAAAATCGAAAATCACGGTATCTATAGTTAGAGATAAGGGTTCCAATCGAAAATAATCCAATTTCAGGGGTACTGTAGCTTCAATAGAGCGAATTTGAGGAATATGAAGGGATAGAGAGGCTCTGAAATTTTTTAAAAATTAAATTTTTTTTTTGATCTACACATACTCACCGTTGATCAAATCTCAAATATTTCAGCAGGTTTTTCCAGAAATCTTCAGGAAATTCATTTTCCATTTTTTCTTTTAAATATCGAAATATGAAAAAAGAGGAAAAATGCCAATTTTTATGTTCATAAGACCCATAAATAGAGACGCAGACATAGAAAATAATCAAATTTTGAAATTTTTCGCAATTCAGAAATAGTATAGCTTGTTATCAG</canonical>
            <polymorphic>AAGTCAAACTTTCTAAGAAAAAAGTAGAAAATTGAAGATTTCAACTCATGTACTCCTCGTGGACAATTCAACGCGCGAAATTTGAATTTTTGGGTTAAAAAACAGCTTAAAACTTGATTTTTTGGGGGTAAAATCGCTGAAAATCAACTGAAACTATTTTTCCTGTATATCTGATTACCGTAGTTCAAGAATTTCTAGAAAAAACTTATTTTTTCGAGCTCCAAATTTTTCAAATTCTCAATTTCGATTTCCAATTTTTCCCATGGACTTGGACTCAGGAAATCGAAAATTTTTCGGAACTCTTGAAAATTCTGAATAGCCAAATGCAGCTCCTTCACCAAAATTCTACTTCTCATTTTCTCTGGAATTCTCTTCTGGAAATCTTCCACATCATCGATTCTCAATCTTCGAATATTGACTTTTTCAAATCTTCCAAATAGAAAATCCAAAAATTTGAGCTCAGCTTCTCCTTGGGTTATCCCTATTGGCACTTTCTTTTYCCATCGATTGATTAGATCCACTTTTCGAAAAAATAAATTTCCAAAATGTTTTCGTTTCGAAATTTCCTCAATTTCTTTTTTCGACGGTGGAGATGAGATCCAAAAATTCCAGAATTCATAAAAATCGAAAATCACGGTATCTATAGTTAGAGATAAGGGTTCCAATCGAAAATAATCCAATTTCAGGGGTACTGTAGCTTCAATAGAGCGAATTTGAGGAATATGAAGGGATAGAGAGGCTCTGAAATTTTTTAAAAATTAAATTTTTTTTTTGATCTACACATACTCACCGTTGATCAAATCTCAAATATTTCAGCAGGTTTTTCCAGAAATCTTCAGGAAATTCATTTTCCATTTTTTCTTTTAAATATCGAAATATGAAAAAAGAGGAAAAATGCCAATTTTTATGTTCATAAGACCCATAAATAGAGACGCAGACATAGAAAATAATCAAATTTTGAAATTTTTCGCAATTCAGAAATAGTATAGCTTGTTATCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTTCAAATCTTCCAAATAGA</pcr_primer_p1>
		<pcr_primer_p2>GATTGGAACCCTTATCTCTAACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTTTTCAAATCTTCCAAATAGAAAATCCAAAAATTTGAGCTCAGCTTCTCCTTGGGTTATCCCTATTGGCACTTTCTTTTCCCATCGATTGATTAGATCCACTTTTCGAAAAAATAAATTTCCAAAATGTTTTCGTTTCGAAATTTCCTCAATTTCTTTTTTCGACGGTGGAGATGAGATCCAAAAATTCCAGAATTCATAAAAATCGAAAATCACGGTATCTATAGTTAGAGATAAGGGTTCCAATC</canonical_amplicon>
		<polymorphic_amplicon>CTTTTTCAAATCTTCCAAATAGAAAATCCAAAAATTTGAGCTCAGCTTCTCCTTGGGTTATCCCTATTGGCACTTTCTTTTYCCATCGATTGATTAGATCCACTTTTCGAAAAAATAAATTTCCAAAATGTTTTCGTTTCGAAATTTCCTCAATTTCTTTTTTCGACGGTGGAGATGAGATCCAAAAATTCCAGAATTCATAAAAATCGAAAATCACGGTATCTATAGTTAGAGATAAGGGTTCCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15864</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>270567</contig_pos>
        <strand>+</strand>
        <context>AGAAAATCCA[A/G]AAATTTGAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTCAATCTTCGAATATTGACTTTTTCAAATCTTCCAAATAGAAAATCCA</left_flank>
        <right_flank>AAATTTGAGCTCAGCTTCTCCTTGGGTTATCCCTATTGGCACTTTCTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCATCCTGAAATTCAATTTTTGAATAAAAAAAATGGACAAAAATTATAGAAAGTCAAACTTTCTAAGAAAAAAGTAGAAAATTGAAGATTTCAACTCATGTACTCCTCGTGGACAATTCAACGCGCGAAATTTGAATTTTTGGGTTAAAAAACAGCTTAAAACTTGATTTTTTGGGGGTAAAATCGCTGAAAATCAACTGAAACTATTTTTCCTGTATATCTGATTACCGTAGTTCAAGAATTTCTAGAAAAAACTTATTTTTTCGAGCTCCAAATTTTTCAAATTCTCAATTTCGATTTCCAATTTTTCCCATGGACTTGGACTCAGGAAATCGAAAATTTTTCGGAACTCTTGAAAATTCTGAATAGCCAAATGCAGCTCCTTCACCAAAATTCTACTTCTCATTTTCTCTGGAATTCTCTTCTGGAAATCTTCCACATCATCGATTCTCAATCTTCGAATATTGACTTTTTCAAATCTTCCAAATAGAAAATCCAAAAATTTGAGCTCAGCTTCTCCTTGGGTTATCCCTATTGGCACTTTCTTTTCCCATCGATTGATTAGATCCACTTTTCGAAAAAATAAATTTCCAAAATGTTTTCGTTTCGAAATTTCCTCAATTTCTTTTTTCGACGGTGGAGATGAGATCCAAAAATTCCAGAATTCATAAAAATCGAAAATCACGGTATCTATAGTTAGAGATAAGGGTTCCAATCGAAAATAATCCAATTTCAGGGGTACTGTAGCTTCAATAGAGCGAATTTGAGGAATATGAAGGGATAGAGAGGCTCTGAAATTTTTTAAAAATTAAATTTTTTTTTTGATCTACACATACTCACCGTTGATCAAATCTCAAATATTTCAGCAGGTTTTTCCAGAAATCTTCAGGAAATTCATTTTCCATTTTTTCTTTTAAATATCGAAATATGAAAAAAGAGGAAAAATGCCAATTTTTATGTTCATAAGACCCATAAATAGAGACGCAGACATAGAAAATA</canonical>
            <polymorphic>AGCATCCTGAAATTCAATTTTTGAATAAAAAAAATGGACAAAAATTATAGAAAGTCAAACTTTCTAAGAAAAAAGTAGAAAATTGAAGATTTCAACTCATGTACTCCTCGTGGACAATTCAACGCGCGAAATTTGAATTTTTGGGTTAAAAAACAGCTTAAAACTTGATTTTTTGGGGGTAAAATCGCTGAAAATCAACTGAAACTATTTTTCCTGTATATCTGATTACCGTAGTTCAAGAATTTCTAGAAAAAACTTATTTTTTCGAGCTCCAAATTTTTCAAATTCTCAATTTCGATTTCCAATTTTTCCCATGGACTTGGACTCAGGAAATCGAAAATTTTTCGGAACTCTTGAAAATTCTGAATAGCCAAATGCAGCTCCTTCACCAAAATTCTACTTCTCATTTTCTCTGGAATTCTCTTCTGGAAATCTTCCACATCATCGATTCTCAATCTTCGAATATTGACTTTTTCAAATCTTCCAAATAGAAAATCCARAAATTTGAGCTCAGCTTCTCCTTGGGTTATCCCTATTGGCACTTTCTTTTCCCATCGATTGATTAGATCCACTTTTCGAAAAAATAAATTTCCAAAATGTTTTCGTTTCGAAATTTCCTCAATTTCTTTTTTCGACGGTGGAGATGAGATCCAAAAATTCCAGAATTCATAAAAATCGAAAATCACGGTATCTATAGTTAGAGATAAGGGTTCCAATCGAAAATAATCCAATTTCAGGGGTACTGTAGCTTCAATAGAGCGAATTTGAGGAATATGAAGGGATAGAGAGGCTCTGAAATTTTTTAAAAATTAAATTTTTTTTTTGATCTACACATACTCACCGTTGATCAAATCTCAAATATTTCAGCAGGTTTTTCCAGAAATCTTCAGGAAATTCATTTTCCATTTTTTCTTTTAAATATCGAAATATGAAAAAAGAGGAAAAATGCCAATTTTTATGTTCATAAGACCCATAAATAGAGACGCAGACATAGAAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATCATCGATTCTCAATCTTC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCGATTTTTATGAATTCTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACATCATCGATTCTCAATCTTCGAATATTGACTTTTTCAAATCTTCCAAATAGAAAATCCAAAAATTTGAGCTCAGCTTCTCCTTGGGTTATCCCTATTGGCACTTTCTTTTCCCATCGATTGATTAGATCCACTTTTCGAAAAAATAAATTTCCAAAATGTTTTCGTTTCGAAATTTCCTCAATTTCTTTTTTCGACGGTGGAGATGAGATCCAAAAATTCCAGAATTCATAAAAATCGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>ACATCATCGATTCTCAATCTTCGAATATTGACTTTTTCAAATCTTCCAAATAGAAAATCCARAAATTTGAGCTCAGCTTCTCCTTGGGTTATCCCTATTGGCACTTTCTTTTCCCATCGATTGATTAGATCCACTTTTCGAAAAAATAAATTTCCAAAATGTTTTCGTTTCGAAATTTCCTCAATTTCTTTTTTCGACGGTGGAGATGAGATCCAAAAATTCCAGAATTCATAAAAATCGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15865</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>275187</contig_pos>
        <strand>+</strand>
        <context>TATCCCGTGA[C/T]CCTCTCGATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTCTTAAGTTTTTTCAGGTCCCATTCCCATGTTTTCAGGTATCCCGTGA</left_flank>
        <right_flank>CCTCTCGATGGTACAAAAAGTGTTCGTGTACATGGGCTAACGGCTAGAAC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATGGCTGTCCACGTGGCGTATGTGCACAATTCGGATGGTGGATCTCTCGATGAGCCAATGACACTTCCACGGACAATTGTGACGGCGTCAGTTAAGAGGATCGATTTGAACAAGTAAGATTTTTTCAGATTCGCAAAGTTTGAACCGATTTATCACGGTTTCCTGGACAGATATCAAAAAGTTGTTAACTGATAATTTGTTTATCACAATATCACCAACATTTTATCAGTTGTTAAATTCTTGGTATATTGCATGGGAGCCGAAATAATTGAGCTCAAACTAGACACTAGCCGTTTCAGGGTTGACATCCATCCATCTCGAGACATCATCATTGATGGTCAAGTGACCTATGCTGGCACTAGCAGCATGCAAGTCTGCCTCAGATTGTTCCAGAACGATGAGAGCGAAAATTTAAACCACTTGCTCAAAGCCGAGTTTATTATGGTTGGTCTTAAGTTTTTTCAGGTCCCATTCCCATGTTTTCAGGTATCCCGTGATCCTCTCGATGGTACAAAAAGTGTTCGTGTACATGGGCTAACGGCTAGAACTCCAGATGAGGCGGAGACGATGCACAAAGCCAAGGAGCACTTCAGAAGACTAGGGAGCCCTGGACAACCTACAATGGAGGAGTTCCGAGTTATACATGATATGTATAATGAGCTGGTTGGGAGAAGTATGGTTCATGATGTGGCGGTTTTGTCAGTAAGTCAAGTTATTTTAATTACCGTCGACATTGAGCTCAGTTGTCTCGATTCCTGTGGAATTTATCAAAAAGTAGTCAACTGATAAATTATTTCTCATAATATCAGCAATATTTTATCAGTTCACAAAGTTTTGATAGCTCTTTTAGGAACCGAGATAATTGAGCTCAAAATGCACAGATAAGGTGGGCACAAAAACAGTATACAACACACTTTGAGCTCCATTATCTTGGTTCCTATGTGAGATATCAAAAAGTGTTCAACTGATAAGTTATTTATCATATTATCACCAATACT</canonical>
            <polymorphic>ATATGGCTGTCCACGTGGCGTATGTGCACAATTCGGATGGTGGATCTCTCGATGAGCCAATGACACTTCCACGGACAATTGTGACGGCGTCAGTTAAGAGGATCGATTTGAACAAGTAAGATTTTTTCAGATTCGCAAAGTTTGAACCGATTTATCACGGTTTCCTGGACAGATATCAAAAAGTTGTTAACTGATAATTTGTTTATCACAATATCACCAACATTTTATCAGTTGTTAAATTCTTGGTATATTGCATGGGAGCCGAAATAATTGAGCTCAAACTAGACACTAGCCGTTTCAGGGTTGACATCCATCCATCTCGAGACATCATCATTGATGGTCAAGTGACCTATGCTGGCACTAGCAGCATGCAAGTCTGCCTCAGATTGTTCCAGAACGATGAGAGCGAAAATTTAAACCACTTGCTCAAAGCCGAGTTTATTATGGTTGGTCTTAAGTTTTTTCAGGTCCCATTCCCATGTTTTCAGGTATCCCGTGAYCCTCTCGATGGTACAAAAAGTGTTCGTGTACATGGGCTAACGGCTAGAACTCCAGATGAGGCGGAGACGATGCACAAAGCCAAGGAGCACTTCAGAAGACTAGGGAGCCCTGGACAACCTACAATGGAGGAGTTCCGAGTTATACATGATATGTATAATGAGCTGGTTGGGAGAAGTATGGTTCATGATGTGGCGGTTTTGTCAGTAAGTCAAGTTATTTTAATTACCGTCGACATTGAGCTCAGTTGTCTCGATTCCTGTGGAATTTATCAAAAAGTAGTCAACTGATAAATTATTTCTCATAATATCAGCAATATTTTATCAGTTCACAAAGTTTTGATAGCTCTTTTAGGAACCGAGATAATTGAGCTCAAAATGCACAGATAAGGTGGGCACAAAAACAGTATACAACACACTTTGAGCTCCATTATCTTGGTTCCTATGTGAGATATCAAAAAGTGTTCAACTGATAAGTTATTTATCATATTATCACCAATACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>503 397 58 42</canonical_bands>
                <polymorphic_bands>900 58 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAGTTTATTATGGTTGGTCTTA</pcr_primer_p1>
		<pcr_primer_p2>CCAACCAGCTCATTATACATATC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CGAGTTTATTATGGTTGGTCTTAAGTTTTTTCAGGTCCCATTCCCATGTTTTCAGGTATCCCGTGATCCTCTCGATGGTACAAAAAGTGTTCGTGTACATGGGCTAACGGCTAGAACTCCAGATGAGGCGGAGACGATGCACAAAGCCAAGGAGCACTTCAGAAGACTAGGGAGCCCTGGACAACCTACAATGGAGGAGTTCCGAGTTATACATGATATGTATAATGAGCTGGTTGG</canonical_amplicon>
		<polymorphic_amplicon>CGAGTTTATTATGGTTGGTCTTAAGTTTTTTCAGGTCCCATTCCCATGTTTTCAGGTATCCCGTGAYCCTCTCGATGGTACAAAAAGTGTTCGTGTACATGGGCTAACGGCTAGAACTCCAGATGAGGCGGAGACGATGCACAAAGCCAAGGAGCACTTCAGAAGACTAGGGAGCCCTGGACAACCTACAATGGAGGAGTTCCGAGTTATACATGATATGTATAATGAGCTGGTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15866</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>275202</contig_pos>
        <strand>+</strand>
        <context>TCGATGGTAC[A/C]AAAAGTGTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAGGTCCCATTCCCATGTTTTCAGGTATCCCGTGATCCTCTCGATGGTAC</left_flank>
        <right_flank>AAAAGTGTTCGTGTACATGGGCTAACGGCTAGAACTCCAGATGAGGCGGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCGTATGTGCACAATTCGGATGGTGGATCTCTCGATGAGCCAATGACACTTCCACGGACAATTGTGACGGCGTCAGTTAAGAGGATCGATTTGAACAAGTAAGATTTTTTCAGATTCGCAAAGTTTGAACCGATTTATCACGGTTTCCTGGACAGATATCAAAAAGTTGTTAACTGATAATTTGTTTATCACAATATCACCAACATTTTATCAGTTGTTAAATTCTTGGTATATTGCATGGGAGCCGAAATAATTGAGCTCAAACTAGACACTAGCCGTTTCAGGGTTGACATCCATCCATCTCGAGACATCATCATTGATGGTCAAGTGACCTATGCTGGCACTAGCAGCATGCAAGTCTGCCTCAGATTGTTCCAGAACGATGAGAGCGAAAATTTAAACCACTTGCTCAAAGCCGAGTTTATTATGGTTGGTCTTAAGTTTTTTCAGGTCCCATTCCCATGTTTTCAGGTATCCCGTGATCCTCTCGATGGTACAAAAAGTGTTCGTGTACATGGGCTAACGGCTAGAACTCCAGATGAGGCGGAGACGATGCACAAAGCCAAGGAGCACTTCAGAAGACTAGGGAGCCCTGGACAACCTACAATGGAGGAGTTCCGAGTTATACATGATATGTATAATGAGCTGGTTGGGAGAAGTATGGTTCATGATGTGGCGGTTTTGTCAGTAAGTCAAGTTATTTTAATTACCGTCGACATTGAGCTCAGTTGTCTCGATTCCTGTGGAATTTATCAAAAAGTAGTCAACTGATAAATTATTTCTCATAATATCAGCAATATTTTATCAGTTCACAAAGTTTTGATAGCTCTTTTAGGAACCGAGATAATTGAGCTCAAAATGCACAGATAAGGTGGGCACAAAAACAGTATACAACACACTTTGAGCTCCATTATCTTGGTTCCTATGTGAGATATCAAAAAGTGTTCAACTGATAAGTTATTTATCATATTATCACCAATACTTTATCAGTTGACAGA</canonical>
            <polymorphic>TGGCGTATGTGCACAATTCGGATGGTGGATCTCTCGATGAGCCAATGACACTTCCACGGACAATTGTGACGGCGTCAGTTAAGAGGATCGATTTGAACAAGTAAGATTTTTTCAGATTCGCAAAGTTTGAACCGATTTATCACGGTTTCCTGGACAGATATCAAAAAGTTGTTAACTGATAATTTGTTTATCACAATATCACCAACATTTTATCAGTTGTTAAATTCTTGGTATATTGCATGGGAGCCGAAATAATTGAGCTCAAACTAGACACTAGCCGTTTCAGGGTTGACATCCATCCATCTCGAGACATCATCATTGATGGTCAAGTGACCTATGCTGGCACTAGCAGCATGCAAGTCTGCCTCAGATTGTTCCAGAACGATGAGAGCGAAAATTTAAACCACTTGCTCAAAGCCGAGTTTATTATGGTTGGTCTTAAGTTTTTTCAGGTCCCATTCCCATGTTTTCAGGTATCCCGTGATCCTCTCGATGGTACMAAAAGTGTTCGTGTACATGGGCTAACGGCTAGAACTCCAGATGAGGCGGAGACGATGCACAAAGCCAAGGAGCACTTCAGAAGACTAGGGAGCCCTGGACAACCTACAATGGAGGAGTTCCGAGTTATACATGATATGTATAATGAGCTGGTTGGGAGAAGTATGGTTCATGATGTGGCGGTTTTGTCAGTAAGTCAAGTTATTTTAATTACCGTCGACATTGAGCTCAGTTGTCTCGATTCCTGTGGAATTTATCAAAAAGTAGTCAACTGATAAATTATTTCTCATAATATCAGCAATATTTTATCAGTTCACAAAGTTTTGATAGCTCTTTTAGGAACCGAGATAATTGAGCTCAAAATGCACAGATAAGGTGGGCACAAAAACAGTATACAACACACTTTGAGCTCCATTATCTTGGTTCCTATGTGAGATATCAAAAAGTGTTCAACTGATAAGTTATTTATCATATTATCACCAATACTTTATCAGTTGACAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGTTTATTATGGTTGGTCTTA</pcr_primer_p1>
		<pcr_primer_p2>CCAACCAGCTCATTATACATATC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CGAGTTTATTATGGTTGGTCTTAAGTTTTTTCAGGTCCCATTCCCATGTTTTCAGGTATCCCGTGATCCTCTCGATGGTACAAAAAGTGTTCGTGTACATGGGCTAACGGCTAGAACTCCAGATGAGGCGGAGACGATGCACAAAGCCAAGGAGCACTTCAGAAGACTAGGGAGCCCTGGACAACCTACAATGGAGGAGTTCCGAGTTATACATGATATGTATAATGAGCTGGTTGG</canonical_amplicon>
		<polymorphic_amplicon>CGAGTTTATTATGGTTGGTCTTAAGTTTTTTCAGGTCCCATTCCCATGTTTTCAGGTATCCCGTGATCCTCTCGATGGTACMAAAAGTGTTCGTGTACATGGGCTAACGGCTAGAACTCCAGATGAGGCGGAGACGATGCACAAAGCCAAGGAGCACTTCAGAAGACTAGGGAGCCCTGGACAACCTACAATGGAGGAGTTCCGAGTTATACATGATATGTATAATGAGCTGGTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15867</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>277715</contig_pos>
        <strand>+</strand>
        <context>CCCATCAATG[A/T]ACCATCAAYG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCAATCAATGGACCCCATCAATATACCTTATCAATGGACCCCATCAATG</left_flank>
        <right_flank>ACCATCAACGCGCAATGGTCTTCTGTATGGTCTTTTTTGCGGCAATTGAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACACTATTTCTTGGCACCTCAATTATTGGGGGAATCAACCAATCAAGAACCAAGAATTAACTTTCAGAGATTTCCAGTCATAAAAGTATTGAACAGTTTTGAAATCTAGTTTCAAGTCTTCCTTACCAACATATATGACTGTTAGGCCAGCTATGGACAATCTATGGGCAAGCAACGGACCATCAACGAACCATCAACGGACAAGCAACGGATGGGCAAATGGAAGACAAGCAATGGGCAAGCAACGGATCATCAATCGACCCAATCAATGGATCCCATCAATGGACCATCAATGGGAAAGCTATAGGCAACCAATAGGCAAGCTATGGGCAAGCAACGGACCATCAACAGATCACACCAATGAACCCTGTTAACGGACCATCAACGGACCATCAACGGATGGGCAAATGGGAGACAAGCAATGGGCAAGCAACGGACCATCAATGGACTCAATCAATGGACCCCATCAATATACCTTATCAATGGACCCCATCAATGTACCATCAACGCGCAATGGTCTTCTGTATGGTCTTTTTTGCGGCAATTGAGTCTCTACTTTCCCAGGATCCCAAATGTGCTCAAAAATATAGGACAGGTGAATAAATACTAAATCTTAATACAGACAACATGATGACGTGTGACATAAAATCAATAAAATGTCTTCTAATTTTTTTCCCAGGGACCAAATCAACCAGAAGAATGTCCTGTCCCACTGTTCTCTTTTTTCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTTTGTGGGACCGGGGTAAGTTTCATTTATGG</canonical>
            <polymorphic>CACACTATTTCTTGGCACCTCAATTATTGGGGGAATCAACCAATCAAGAACCAAGAATTAACTTTCAGAGATTTCCAGTCATAAAAGTATTGAACAGTTTTGAAATCTAGTTTCAAGTCTTCCTTACCAACATATATGACTGTTAGGCCAGCTATGGACAATCTATGGGCAAGCAACGGACCATCAACGAACCATCAACGGACAAGCAACGGATGGGCAAATGGAAGACAAGCAATGGGCAAGCAACGGATCATCAATCGACCCAATCAATGGATCCCATCAATGGACCATCAATGGGAAAGCTATAGGCAACCAATAGGCAAGCTATGGGCAAGCAACGGACCATCAACAGATCACACCAATGAACCCTGTTAACGGACCATCAACGGACCATCAACGGATGGGCAAATGGGAGACAAGCAATGGGCAAGCAACGGACCATCAATGGACTCAATCAATGGACCCCATCAATATACCTTATCAATGGACCCCATCAATGWACCATCAACGCGCAATGGTCTTCTGTATGGTCTTTTTTGCGGCAATTGAGTCTCTACTTTCCCAGGATCCCAAATGTGCTCAAAAATATAGGACAGGTGAATAAATACTAAATCTTAATACAGACAACATGATGACGTGTGACATAAAATCAATAAAATGTCTTCTAATTTTTTTCCCAGGGACCAAATCAACCAGAAGAATGTCCTGTCCCACTGTTCTCTTTTTTCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTTTGTGGGACCGGGGTAAGTTTCATTTATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACAGATCACACCAATGAA</pcr_primer_p1>
		<pcr_primer_p2>CTGTCCTATATTTTTGAGCACAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAACAGATCACACCAATGAACCCTGTTAACGGACCATCAACGGACCATCAACGGATGGGCAAATGGGAGACAAGCAATGGGCAAGCAACGGACCATCAATGGACTCAATCAATGGACCCCATCAATATACCTTATCAATGGACCCCATCAATGTACCATCAACGCGCAATGGTCTTCTGTATGGTCTTTTTTGCGGCAATTGAGTCTCTACTTTCCCAGGATCCCAAATGTGCTCAAAAATATAGGACAG</canonical_amplicon>
		<polymorphic_amplicon>CAACAGATCACACCAATGAACCCTGTTAACGGACCATCAACGGACCATCAACGGATGGGCAAATGGGAGACAAGCAATGGGCAAGCAACGGACCATCAATGGACTCAATCAATGGACCCCATCAATATACCTTATCAATGGACCCCATCAATGWACCATCAACGCGCAATGGTCTTCTGTATGGTCTTTTTTGCGGCAATTGAGTCTCTACTTTCCCAGGATCCCAAATGTGCTCAAAAATATAGGACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15868</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>277373</contig_pos>
        <strand>+</strand>
        <context>CCAGCTATGG[A/G]CAATCTATGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGTTTCAAGTCTTCCTTACCAACATATATGACTGTTAGGCCAGCTATGG</left_flank>
        <right_flank>CAATCTATGGGCAAGCAACGGACCATCAACGAACCATCAACGGACAAGCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTTATTCCTAGCGATTTTACAGCGAAAAATCAAGCTTTCAGCTGCTTTTCAACCCAAAAATTCAAACATCGCGCGTCGACTTGTCCACGAGGAGTACAAAATGCAAAATCGATCAAAACCTTACGATTGGTTAAATTTCAATGATTTTCACTCATTTTTTTACATTTTCATTACAAAAACGGGCTCAAATAGAGTCCTACCAAACCCAAATGTACCATATTCAAAAATCCGCGAGCTTGTTTTTGACAGCTTCGGCTAAATTCAAGAGAGGTGATGGCCTAGCACCTTGTCTTTGATTCTCTTCCCACCTAATTTTGTCTGTCACCTCTTCACAATGCACACTATTTCTTGGCACCTCAATTATTGGGGGAATCAACCAATCAAGAACCAAGAATTAACTTTCAGAGATTTCCAGTCATAAAAGTATTGAACAGTTTTGAAATCTAGTTTCAAGTCTTCCTTACCAACATATATGACTGTTAGGCCAGCTATGGACAATCTATGGGCAAGCAACGGACCATCAACGAACCATCAACGGACAAGCAACGGATGGGCAAATGGAAGACAAGCAATGGGCAAGCAACGGATCATCAATCGACCCAATCAATGGATCCCATCAATGGACCATCAATGGGAAAGCTATAGGCAACCAATAGGCAAGCTATGGGCAAGCAACGGACCATCAACAGATCACACCAATGAACCCTGTTAACGGACCATCAACGGACCATCAACGGATGGGCAAATGGGAGACAAGCAATGGGCAAGCAACGGACCATCAATGGACTCAATCAATGGACCCCATCAATATACCTTATCAATGGACCCCATCAATGTACCATCAACGCGCAATGGTCTTCTGTATGGTCTTTTTTGCGGCAATTGAGTCTCTACTTTCCCAGGATCCCAAATGTGCTCAAAAATATAGGACAGGTGAATAAATACTAAATCTTAATACAGACAACATGATGACGTGTGACATAAAATCAATAAAA</canonical>
            <polymorphic>TTTTTTTTATTCCTAGCGATTTTACAGCGAAAAATCAAGCTTTCAGCTGCTTTTCAACCCAAAAATTCAAACATCGCGCGTCGACTTGTCCACGAGGAGTACAAAATGCAAAATCGATCAAAACCTTACGATTGGTTAAATTTCAATGATTTTCACTCATTTTTTTACATTTTCATTACAAAAACGGGCTCAAATAGAGTCCTACCAAACCCAAATGTACCATATTCAAAAATCCGCGAGCTTGTTTTTGACAGCTTCGGCTAAATTCAAGAGAGGTGATGGCCTAGCACCTTGTCTTTGATTCTCTTCCCACCTAATTTTGTCTGTCACCTCTTCACAATGCACACTATTTCTTGGCACCTCAATTATTGGGGGAATCAACCAATCAAGAACCAAGAATTAACTTTCAGAGATTTCCAGTCATAAAAGTATTGAACAGTTTTGAAATCTAGTTTCAAGTCTTCCTTACCAACATATATGACTGTTAGGCCAGCTATGGRCAATCTATGGGCAAGCAACGGACCATCAACGAACCATCAACGGACAAGCAACGGATGGGCAAATGGAAGACAAGCAATGGGCAAGCAACGGATCATCAATCGACCCAATCAATGGATCCCATCAATGGACCATCAATGGGAAAGCTATAGGCAACCAATAGGCAAGCTATGGGCAAGCAACGGACCATCAACAGATCACACCAATGAACCCTGTTAACGGACCATCAACGGACCATCAACGGATGGGCAAATGGGAGACAAGCAATGGGCAAGCAACGGACCATCAATGGACTCAATCAATGGACCCCATCAATATACCTTATCAATGGACCCCATCAATGTACCATCAACGCGCAATGGTCTTCTGTATGGTCTTTTTTGCGGCAATTGAGTCTCTACTTTCCCAGGATCCCAAATGTGCTCAAAAATATAGGACAGGTGAATAAATACTAAATCTTAATACAGACAACATGATGACGTGTGACATAAAATCAATAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTAGTTTCAAGTCTTCCTTACC</pcr_primer_p1>
		<pcr_primer_p2>GGTGTGATCTGTTGATGGTC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATCTAGTTTCAAGTCTTCCTTACCAACATATATGACTGTTAGGCCAGCTATGGACAATCTATGGGCAAGCAACGGACCATCAACGAACCATCAACGGACAAGCAACGGATGGGCAAATGGAAGACAAGCAATGGGCAAGCAACGGATCATCAATCGACCCAATCAATGGATCCCATCAATGGACCATCAATGGGAAAGCTATAGGCAACCAATAGGCAAGCTATGGGCAAGCAACGGACCATCAACAGATCACACC</canonical_amplicon>
		<polymorphic_amplicon>ATCTAGTTTCAAGTCTTCCTTACCAACATATATGACTGTTAGGCCAGCTATGGRCAATCTATGGGCAAGCAACGGACCATCAACGAACCATCAACGGACAAGCAACGGATGGGCAAATGGAAGACAAGCAATGGGCAAGCAACGGATCATCAATCGACCCAATCAATGGATCCCATCAATGGACCATCAATGGGAAAGCTATAGGCAACCAATAGGCAAGCTATGGGCAAGCAACGGACCATCAACAGATCACACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15869</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>277358</contig_pos>
        <strand>+</strand>
        <context>TATATGACTG[A/T]TAGGCCAGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACAGTTTTGAAATCTAGTTTCAAGTCTTCCTTACCAACATATATGACTG</left_flank>
        <right_flank>TAGGCCAGCTATGGACAATCTATGGGCAAGCAACGGACCATCAACGAACC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGAAAAATCTGATTTTTTTTATTCCTAGCGATTTTACAGCGAAAAATCAAGCTTTCAGCTGCTTTTCAACCCAAAAATTCAAACATCGCGCGTCGACTTGTCCACGAGGAGTACAAAATGCAAAATCGATCAAAACCTTACGATTGGTTAAATTTCAATGATTTTCACTCATTTTTTTACATTTTCATTACAAAAACGGGCTCAAATAGAGTCCTACCAAACCCAAATGTACCATATTCAAAAATCCGCGAGCTTGTTTTTGACAGCTTCGGCTAAATTCAAGAGAGGTGATGGCCTAGCACCTTGTCTTTGATTCTCTTCCCACCTAATTTTGTCTGTCACCTCTTCACAATGCACACTATTTCTTGGCACCTCAATTATTGGGGGAATCAACCAATCAAGAACCAAGAATTAACTTTCAGAGATTTCCAGTCATAAAAGTATTGAACAGTTTTGAAATCTAGTTTCAAGTCTTCCTTACCAACATATATGACTGTTAGGCCAGCTATGGACAATCTATGGGCAAGCAACGGACCATCAACGAACCATCAACGGACAAGCAACGGATGGGCAAATGGAAGACAAGCAATGGGCAAGCAACGGATCATCAATCGACCCAATCAATGGATCCCATCAATGGACCATCAATGGGAAAGCTATAGGCAACCAATAGGCAAGCTATGGGCAAGCAACGGACCATCAACAGATCACACCAATGAACCCTGTTAACGGACCATCAACGGACCATCAACGGATGGGCAAATGGGAGACAAGCAATGGGCAAGCAACGGACCATCAATGGACTCAATCAATGGACCCCATCAATATACCTTATCAATGGACCCCATCAATGTACCATCAACGCGCAATGGTCTTCTGTATGGTCTTTTTTGCGGCAATTGAGTCTCTACTTTCCCAGGATCCCAAATGTGCTCAAAAATATAGGACAGGTGAATAAATACTAAATCTTAATACAGACAACATGATGACGTGTGAC</canonical>
            <polymorphic>TTTCGAAAAATCTGATTTTTTTTATTCCTAGCGATTTTACAGCGAAAAATCAAGCTTTCAGCTGCTTTTCAACCCAAAAATTCAAACATCGCGCGTCGACTTGTCCACGAGGAGTACAAAATGCAAAATCGATCAAAACCTTACGATTGGTTAAATTTCAATGATTTTCACTCATTTTTTTACATTTTCATTACAAAAACGGGCTCAAATAGAGTCCTACCAAACCCAAATGTACCATATTCAAAAATCCGCGAGCTTGTTTTTGACAGCTTCGGCTAAATTCAAGAGAGGTGATGGCCTAGCACCTTGTCTTTGATTCTCTTCCCACCTAATTTTGTCTGTCACCTCTTCACAATGCACACTATTTCTTGGCACCTCAATTATTGGGGGAATCAACCAATCAAGAACCAAGAATTAACTTTCAGAGATTTCCAGTCATAAAAGTATTGAACAGTTTTGAAATCTAGTTTCAAGTCTTCCTTACCAACATATATGACTGWTAGGCCAGCTATGGACAATCTATGGGCAAGCAACGGACCATCAACGAACCATCAACGGACAAGCAACGGATGGGCAAATGGAAGACAAGCAATGGGCAAGCAACGGATCATCAATCGACCCAATCAATGGATCCCATCAATGGACCATCAATGGGAAAGCTATAGGCAACCAATAGGCAAGCTATGGGCAAGCAACGGACCATCAACAGATCACACCAATGAACCCTGTTAACGGACCATCAACGGACCATCAACGGATGGGCAAATGGGAGACAAGCAATGGGCAAGCAACGGACCATCAATGGACTCAATCAATGGACCCCATCAATATACCTTATCAATGGACCCCATCAATGTACCATCAACGCGCAATGGTCTTCTGTATGGTCTTTTTTGCGGCAATTGAGTCTCTACTTTCCCAGGATCCCAAATGTGCTCAAAAATATAGGACAGGTGAATAAATACTAAATCTTAATACAGACAACATGATGACGTGTGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>502 453 45</canonical_bands>
                <polymorphic_bands>547 453</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTAACTTTCAGAGATTTCCAGT</pcr_primer_p1>
		<pcr_primer_p2>CTATTGGTTGCCTATAGCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>AATTAACTTTCAGAGATTTCCAGTCATAAAAGTATTGAACAGTTTTGAAATCTAGTTTCAAGTCTTCCTTACCAACATATATGACTGTTAGGCCAGCTATGGACAATCTATGGGCAAGCAACGGACCATCAACGAACCATCAACGGACAAGCAACGGATGGGCAAATGGAAGACAAGCAATGGGCAAGCAACGGATCATCAATCGACCCAATCAATGGATCCCATCAATGGACCATCAATGGGAAAGCTATAGGCAACCAATAG</canonical_amplicon>
		<polymorphic_amplicon>AATTAACTTTCAGAGATTTCCAGTCATAAAAGTATTGAACAGTTTTGAAATCTAGTTTCAAGTCTTCCTTACCAACATATATGACTGWTAGGCCAGCTATGGACAATCTATGGGCAAGCAACGGACCATCAACGAACCATCAACGGACAAGCAACGGATGGGCAAATGGAAGACAAGCAATGGGCAAGCAACGGATCATCAATCGACCCAATCAATGGATCCCATCAATGGACCATCAATGGGAAAGCTATAGGCAACCAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15870</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>277295</contig_pos>
        <strand>+</strand>
        <context>GATTTCCAGT[C/T]ATAAAAGTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGGAATCAACCAATCAAGAACCAAGAATTAACTTTCAGAGATTTCCAGT</left_flank>
        <right_flank>ATAAAAGTATTGAACAGTTTTGAAATCTAGTTTCAAGTCTTCCTTACCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGTTTTTCAGGTATATGTCGACTTCTGAAAGACACCGAACTTTTTTTTCAAAAAATGTTTTTTTCGAAAAATCTGATTTTTTTTATTCCTAGCGATTTTACAGCGAAAAATCAAGCTTTCAGCTGCTTTTCAACCCAAAAATTCAAACATCGCGCGTCGACTTGTCCACGAGGAGTACAAAATGCAAAATCGATCAAAACCTTACGATTGGTTAAATTTCAATGATTTTCACTCATTTTTTTACATTTTCATTACAAAAACGGGCTCAAATAGAGTCCTACCAAACCCAAATGTACCATATTCAAAAATCCGCGAGCTTGTTTTTGACAGCTTCGGCTAAATTCAAGAGAGGTGATGGCCTAGCACCTTGTCTTTGATTCTCTTCCCACCTAATTTTGTCTGTCACCTCTTCACAATGCACACTATTTCTTGGCACCTCAATTATTGGGGGAATCAACCAATCAAGAACCAAGAATTAACTTTCAGAGATTTCCAGTCATAAAAGTATTGAACAGTTTTGAAATCTAGTTTCAAGTCTTCCTTACCAACATATATGACTGTTAGGCCAGCTATGGACAATCTATGGGCAAGCAACGGACCATCAACGAACCATCAACGGACAAGCAACGGATGGGCAAATGGAAGACAAGCAATGGGCAAGCAACGGATCATCAATCGACCCAATCAATGGATCCCATCAATGGACCATCAATGGGAAAGCTATAGGCAACCAATAGGCAAGCTATGGGCAAGCAACGGACCATCAACAGATCACACCAATGAACCCTGTTAACGGACCATCAACGGACCATCAACGGATGGGCAAATGGGAGACAAGCAATGGGCAAGCAACGGACCATCAATGGACTCAATCAATGGACCCCATCAATATACCTTATCAATGGACCCCATCAATGTACCATCAACGCGCAATGGTCTTCTGTATGGTCTTTTTTGCGGCAATTGAGTCTCTACTTTCCCAGGATCCCAAATGTGCT</canonical>
            <polymorphic>CTAGTTTTTCAGGTATATGTCGACTTCTGAAAGACACCGAACTTTTTTTTCAAAAAATGTTTTTTTCGAAAAATCTGATTTTTTTTATTCCTAGCGATTTTACAGCGAAAAATCAAGCTTTCAGCTGCTTTTCAACCCAAAAATTCAAACATCGCGCGTCGACTTGTCCACGAGGAGTACAAAATGCAAAATCGATCAAAACCTTACGATTGGTTAAATTTCAATGATTTTCACTCATTTTTTTACATTTTCATTACAAAAACGGGCTCAAATAGAGTCCTACCAAACCCAAATGTACCATATTCAAAAATCCGCGAGCTTGTTTTTGACAGCTTCGGCTAAATTCAAGAGAGGTGATGGCCTAGCACCTTGTCTTTGATTCTCTTCCCACCTAATTTTGTCTGTCACCTCTTCACAATGCACACTATTTCTTGGCACCTCAATTATTGGGGGAATCAACCAATCAAGAACCAAGAATTAACTTTCAGAGATTTCCAGTYATAAAAGTATTGAACAGTTTTGAAATCTAGTTTCAAGTCTTCCTTACCAACATATATGACTGTTAGGCCAGCTATGGACAATCTATGGGCAAGCAACGGACCATCAACGAACCATCAACGGACAAGCAACGGATGGGCAAATGGAAGACAAGCAATGGGCAAGCAACGGATCATCAATCGACCCAATCAATGGATCCCATCAATGGACCATCAATGGGAAAGCTATAGGCAACCAATAGGCAAGCTATGGGCAAGCAACGGACCATCAACAGATCACACCAATGAACCCTGTTAACGGACCATCAACGGACCATCAACGGATGGGCAAATGGGAGACAAGCAATGGGCAAGCAACGGACCATCAATGGACTCAATCAATGGACCCCATCAATATACCTTATCAATGGACCCCATCAATGTACCATCAACGCGCAATGGTCTTCTGTATGGTCTTTTTTGCGGCAATTGAGTCTCTACTTTCCCAGGATCCCAAATGTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAAATTCAAGAGAGGTGATG</pcr_primer_p1>
		<pcr_primer_p2>ATATGTTGGTAAGGAAGACTTGA</pcr_primer_p2>
		<pcr_amplicon_size>218</pcr_amplicon_size>
		<canonical_amplicon>GCTAAATTCAAGAGAGGTGATGGCCTAGCACCTTGTCTTTGATTCTCTTCCCACCTAATTTTGTCTGTCACCTCTTCACAATGCACACTATTTCTTGGCACCTCAATTATTGGGGGAATCAACCAATCAAGAACCAAGAATTAACTTTCAGAGATTTCCAGTCATAAAAGTATTGAACAGTTTTGAAATCTAGTTTCAAGTCTTCCTTACCAACATAT</canonical_amplicon>
		<polymorphic_amplicon>GCTAAATTCAAGAGAGGTGATGGCCTAGCACCTTGTCTTTGATTCTCTTCCCACCTAATTTTGTCTGTCACCTCTTCACAATGCACACTATTTCTTGGCACCTCAATTATTGGGGGAATCAACCAATCAAGAACCAAGAATTAACTTTCAGAGATTTCCAGTYATAAAAGTATTGAACAGTTTTGAAATCTAGTTTCAAGTCTTCCTTACCAACATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15871</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>277249</contig_pos>
        <strand>+</strand>
        <context>TTATTGGGGG[A/G]ATCAACCAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCACCTCTTCACAATGCACACTATTTCTTGGCACCTCAATTATTGGGGG</left_flank>
        <right_flank>ATCAACCAATCAAGAACCAAGAATTAACTTTCAGAGATTTCCAGTCATAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGCCTAGATCGAAAACTTTGCATTCACAGAATTTTTTGAAAAATCCTAGTTTTTCAGGTATATGTCGACTTCTGAAAGACACCGAACTTTTTTTTCAAAAAATGTTTTTTTCGAAAAATCTGATTTTTTTTATTCCTAGCGATTTTACAGCGAAAAATCAAGCTTTCAGCTGCTTTTCAACCCAAAAATTCAAACATCGCGCGTCGACTTGTCCACGAGGAGTACAAAATGCAAAATCGATCAAAACCTTACGATTGGTTAAATTTCAATGATTTTCACTCATTTTTTTACATTTTCATTACAAAAACGGGCTCAAATAGAGTCCTACCAAACCCAAATGTACCATATTCAAAAATCCGCGAGCTTGTTTTTGACAGCTTCGGCTAAATTCAAGAGAGGTGATGGCCTAGCACCTTGTCTTTGATTCTCTTCCCACCTAATTTTGTCTGTCACCTCTTCACAATGCACACTATTTCTTGGCACCTCAATTATTGGGGGAATCAACCAATCAAGAACCAAGAATTAACTTTCAGAGATTTCCAGTCATAAAAGTATTGAACAGTTTTGAAATCTAGTTTCAAGTCTTCCTTACCAACATATATGACTGTTAGGCCAGCTATGGACAATCTATGGGCAAGCAACGGACCATCAACGAACCATCAACGGACAAGCAACGGATGGGCAAATGGAAGACAAGCAATGGGCAAGCAACGGATCATCAATCGACCCAATCAATGGATCCCATCAATGGACCATCAATGGGAAAGCTATAGGCAACCAATAGGCAAGCTATGGGCAAGCAACGGACCATCAACAGATCACACCAATGAACCCTGTTAACGGACCATCAACGGACCATCAACGGATGGGCAAATGGGAGACAAGCAATGGGCAAGCAACGGACCATCAATGGACTCAATCAATGGACCCCATCAATATACCTTATCAATGGACCCCATCAATGTACCATCAACGCGCAATGGTCTTCTGTATGGTCTT</canonical>
            <polymorphic>AGGCCTAGATCGAAAACTTTGCATTCACAGAATTTTTTGAAAAATCCTAGTTTTTCAGGTATATGTCGACTTCTGAAAGACACCGAACTTTTTTTTCAAAAAATGTTTTTTTCGAAAAATCTGATTTTTTTTATTCCTAGCGATTTTACAGCGAAAAATCAAGCTTTCAGCTGCTTTTCAACCCAAAAATTCAAACATCGCGCGTCGACTTGTCCACGAGGAGTACAAAATGCAAAATCGATCAAAACCTTACGATTGGTTAAATTTCAATGATTTTCACTCATTTTTTTACATTTTCATTACAAAAACGGGCTCAAATAGAGTCCTACCAAACCCAAATGTACCATATTCAAAAATCCGCGAGCTTGTTTTTGACAGCTTCGGCTAAATTCAAGAGAGGTGATGGCCTAGCACCTTGTCTTTGATTCTCTTCCCACCTAATTTTGTCTGTCACCTCTTCACAATGCACACTATTTCTTGGCACCTCAATTATTGGGGGRATCAACCAATCAAGAACCAAGAATTAACTTTCAGAGATTTCCAGTCATAAAAGTATTGAACAGTTTTGAAATCTAGTTTCAAGTCTTCCTTACCAACATATATGACTGTTAGGCCAGCTATGGACAATCTATGGGCAAGCAACGGACCATCAACGAACCATCAACGGACAAGCAACGGATGGGCAAATGGAAGACAAGCAATGGGCAAGCAACGGATCATCAATCGACCCAATCAATGGATCCCATCAATGGACCATCAATGGGAAAGCTATAGGCAACCAATAGGCAAGCTATGGGCAAGCAACGGACCATCAACAGATCACACCAATGAACCCTGTTAACGGACCATCAACGGACCATCAACGGATGGGCAAATGGGAGACAAGCAATGGGCAAGCAACGGACCATCAATGGACTCAATCAATGGACCCCATCAATATACCTTATCAATGGACCCCATCAATGTACCATCAACGCGCAATGGTCTTCTGTATGGTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>415 321 103 86 75</canonical_bands>
                <polymorphic_bands>490 321 103 86</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 424 75</canonical_bands>
                <polymorphic_bands>576 424</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAATGTACCATATTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGGTAAGGAAGACTTGAAACTA</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>CCAAATGTACCATATTCAAAAATCCGCGAGCTTGTTTTTGACAGCTTCGGCTAAATTCAAGAGAGGTGATGGCCTAGCACCTTGTCTTTGATTCTCTTCCCACCTAATTTTGTCTGTCACCTCTTCACAATGCACACTATTTCTTGGCACCTCAATTATTGGGGGAATCAACCAATCAAGAACCAAGAATTAACTTTCAGAGATTTCCAGTCATAAAAGTATTGAACAGTTTTGAAATCTAGTTTCAAGTCTTCCTTACCAA</canonical_amplicon>
		<polymorphic_amplicon>CCAAATGTACCATATTCAAAAATCCGCGAGCTTGTTTTTGACAGCTTCGGCTAAATTCAAGAGAGGTGATGGCCTAGCACCTTGTCTTTGATTCTCTTCCCACCTAATTTTGTCTGTCACCTCTTCACAATGCACACTATTTCTTGGCACCTCAATTATTGGGGGRATCAACCAATCAAGAACCAAGAATTAACTTTCAGAGATTTCCAGTCATAAAAGTATTGAACAGTTTTGAAATCTAGTTTCAAGTCTTCCTTACCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15872</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>277980</contig_pos>
        <strand>+</strand>
        <context>ATTGATTTTT[C/T]GTCAATTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTTCTCTTTTTTCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTT</left_flank>
        <right_flank>GTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAATGGATCCCATCAATGGACCATCAATGGGAAAGCTATAGGCAACCAATAGGCAAGCTATGGGCAAGCAACGGACCATCAACAGATCACACCAATGAACCCTGTTAACGGACCATCAACGGACCATCAACGGATGGGCAAATGGGAGACAAGCAATGGGCAAGCAACGGACCATCAATGGACTCAATCAATGGACCCCATCAATATACCTTATCAATGGACCCCATCAATGTACCATCAACGCGCAATGGTCTTCTGTATGGTCTTTTTTGCGGCAATTGAGTCTCTACTTTCCCAGGATCCCAAATGTGCTCAAAAATATAGGACAGGTGAATAAATACTAAATCTTAATACAGACAACATGATGACGTGTGACATAAAATCAATAAAATGTCTTCTAATTTTTTTCCCAGGGACCAAATCAACCAGAAGAATGTCCTGTCCCACTGTTCTCTTTTTTCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTTTGTGGGACCGGGGTAAGTTTCATTTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGCGGATGGTTTTGATCG</canonical>
            <polymorphic>ATCAATGGATCCCATCAATGGACCATCAATGGGAAAGCTATAGGCAACCAATAGGCAAGCTATGGGCAAGCAACGGACCATCAACAGATCACACCAATGAACCCTGTTAACGGACCATCAACGGACCATCAACGGATGGGCAAATGGGAGACAAGCAATGGGCAAGCAACGGACCATCAATGGACTCAATCAATGGACCCCATCAATATACCTTATCAATGGACCCCATCAATGTACCATCAACGCGCAATGGTCTTCTGTATGGTCTTTTTTGCGGCAATTGAGTCTCTACTTTCCCAGGATCCCAAATGTGCTCAAAAATATAGGACAGGTGAATAAATACTAAATCTTAATACAGACAACATGATGACGTGTGACATAAAATCAATAAAATGTCTTCTAATTTTTTTCCCAGGGACCAAATCAACCAGAAGAATGTCCTGTCCCACTGTTCTCTTTTTTCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTYGTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTTTGTGGGACCGGGGTAAGTTTCATTTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGCGGATGGTTTTGATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAAAAATATAGGACAGGTGAA</pcr_primer_p1>
		<pcr_primer_p2>TGGTTACCTGTAAACATAAAGTGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTCAAAAATATAGGACAGGTGAATAAATACTAAATCTTAATACAGACAACATGATGACGTGTGACATAAAATCAATAAAATGTCTTCTAATTTTTTTCCCAGGGACCAAATCAACCAGAAGAATGTCCTGTCCCACTGTTCTCTTTTTTCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCA</canonical_amplicon>
		<polymorphic_amplicon>CTCAAAAATATAGGACAGGTGAATAAATACTAAATCTTAATACAGACAACATGATGACGTGTGACATAAAATCAATAAAATGTCTTCTAATTTTTTTCCCAGGGACCAAATCAACCAGAAGAATGTCCTGTCCCACTGTTCTCTTTTTTCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTYGTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15873</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>277999</contig_pos>
        <strand>+</strand>
        <context>TGAAGTTTTT[C/T]CRAATTCCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTT</left_flank>
        <right_flank>CGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACG</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGACCATCAATGGGAAAGCTATAGGCAACCAATAGGCAAGCTATGGGCAAGCAACGGACCATCAACAGATCACACCAATGAACCCTGTTAACGGACCATCAACGGACCATCAACGGATGGGCAAATGGGAGACAAGCAATGGGCAAGCAACGGACCATCAATGGACTCAATCAATGGACCCCATCAATATACCTTATCAATGGACCCCATCAATGTACCATCAACGCGCAATGGTCTTCTGTATGGTCTTTTTTGCGGCAATTGAGTCTCTACTTTCCCAGGATCCCAAATGTGCTCAAAAATATAGGACAGGTGAATAAATACTAAATCTTAATACAGACAACATGATGACGTGTGACATAAAATCAATAAAATGTCTTCTAATTTTTTTCCCAGGGACCAAATCAACCAGAAGAATGTCCTGTCCCACTGTTCTCTTTTTTCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTTTGTGGGACCGGGGTAAGTTTCATTTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGCGGATGGTTTTGATCGTTTTTAAATTTTGTACTCC</canonical>
            <polymorphic>GGACCATCAATGGGAAAGCTATAGGCAACCAATAGGCAAGCTATGGGCAAGCAACGGACCATCAACAGATCACACCAATGAACCCTGTTAACGGACCATCAACGGACCATCAACGGATGGGCAAATGGGAGACAAGCAATGGGCAAGCAACGGACCATCAATGGACTCAATCAATGGACCCCATCAATATACCTTATCAATGGACCCCATCAATGTACCATCAACGCGCAATGGTCTTCTGTATGGTCTTTTTTGCGGCAATTGAGTCTCTACTTTCCCAGGATCCCAAATGTGCTCAAAAATATAGGACAGGTGAATAAATACTAAATCTTAATACAGACAACATGATGACGTGTGACATAAAATCAATAAAATGTCTTCTAATTTTTTTCCCAGGGACCAAATCAACCAGAAGAATGTCCTGTCCCACTGTTCTCTTTTTTCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTYCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTTTGTGGGACCGGGGTAAGTTTCATTTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGCGGATGGTTTTGATCGTTTTTAAATTTTGTACTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>500 360 140</canonical_bands>
                <polymorphic_bands>860 140</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 360 97 42</canonical_bands>
                <polymorphic_bands>861 97 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCCTTCTTTTCTCTTCCATAC</pcr_primer_p1>
		<pcr_primer_p2>AAATCCATGATTCCAAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTT</canonical_amplicon>
		<polymorphic_amplicon>TCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTYCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15874</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>278001</contig_pos>
        <strand>+</strand>
        <context>AAGTTTTTYC[A/G]AATTCCGATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTC</left_flank>
        <right_flank>AATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCATCAATGGGAAAGCTATAGGCAACCAATAGGCAAGCTATGGGCAAGCAACGGACCATCAACAGATCACACCAATGAACCCTGTTAACGGACCATCAACGGACCATCAACGGATGGGCAAATGGGAGACAAGCAATGGGCAAGCAACGGACCATCAATGGACTCAATCAATGGACCCCATCAATATACCTTATCAATGGACCCCATCAATGTACCATCAACGCGCAATGGTCTTCTGTATGGTCTTTTTTGCGGCAATTGAGTCTCTACTTTCCCAGGATCCCAAATGTGCTCAAAAATATAGGACAGGTGAATAAATACTAAATCTTAATACAGACAACATGATGACGTGTGACATAAAATCAATAAAATGTCTTCTAATTTTTTTCCCAGGGACCAAATCAACCAGAAGAATGTCCTGTCCCACTGTTCTCTTTTTTCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTTTGTGGGACCGGGGTAAGTTTCATTTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGCGGATGGTTTTGATCGTTTTTAAATTTTGTACTCCTC</canonical>
            <polymorphic>ACCATCAATGGGAAAGCTATAGGCAACCAATAGGCAAGCTATGGGCAAGCAACGGACCATCAACAGATCACACCAATGAACCCTGTTAACGGACCATCAACGGACCATCAACGGATGGGCAAATGGGAGACAAGCAATGGGCAAGCAACGGACCATCAATGGACTCAATCAATGGACCCCATCAATATACCTTATCAATGGACCCCATCAATGTACCATCAACGCGCAATGGTCTTCTGTATGGTCTTTTTTGCGGCAATTGAGTCTCTACTTTCCCAGGATCCCAAATGTGCTCAAAAATATAGGACAGGTGAATAAATACTAAATCTTAATACAGACAACATGATGACGTGTGACATAAAATCAATAAAATGTCTTCTAATTTTTTTCCCAGGGACCAAATCAACCAGAAGAATGTCCTGTCCCACTGTTCTCTTTTTTCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTCRAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTTTGTGGGACCGGGGTAAGTTTCATTTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGCGGATGGTTTTGATCGTTTTTAAATTTTGTACTCCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>500 165 136 78 72 34 15</canonical_bands>
                <polymorphic_bands>665 136 78 72 34 15</polymorphic_bands>
            </assay>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>498 360 142</canonical_bands>
                <polymorphic_bands>858 142</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>500 379 121</canonical_bands>
                <polymorphic_bands>879 121</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 360 97 44</canonical_bands>
                <polymorphic_bands>859 97 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCCTTCTTTTCTCTTCCATAC</pcr_primer_p1>
		<pcr_primer_p2>AAATCCATGATTCCAAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTT</canonical_amplicon>
		<polymorphic_amplicon>TCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTCRAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15875</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>278121</contig_pos>
        <strand>+</strand>
        <context>GCATTTTTGA[A/G]CAGTTTGGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGA</left_flank>
        <right_flank>CAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATGGGAGACAAGCAATGGGCAAGCAACGGACCATCAATGGACTCAATCAATGGACCCCATCAATATACCTTATCAATGGACCCCATCAATGTACCATCAACGCGCAATGGTCTTCTGTATGGTCTTTTTTGCGGCAATTGAGTCTCTACTTTCCCAGGATCCCAAATGTGCTCAAAAATATAGGACAGGTGAATAAATACTAAATCTTAATACAGACAACATGATGACGTGTGACATAAAATCAATAAAATGTCTTCTAATTTTTTTCCCAGGGACCAAATCAACCAGAAGAATGTCCTGTCCCACTGTTCTCTTTTTTCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTTTGTGGGACCGGGGTAAGTTTCATTTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGCGGATGGTTTTGATCGTTTTTAAATTTTGTACTCCTCGTGGACAAGCCGACGCGTGAAATTTGAATTTTTGAGTTACAAATCAGCTAAAAACTTGATGTTTCGGTGTAAAACCGCTAGGAATCATTAAAAACTAACATTTCAAAAACATATTTAAGA</canonical>
            <polymorphic>AAATGGGAGACAAGCAATGGGCAAGCAACGGACCATCAATGGACTCAATCAATGGACCCCATCAATATACCTTATCAATGGACCCCATCAATGTACCATCAACGCGCAATGGTCTTCTGTATGGTCTTTTTTGCGGCAATTGAGTCTCTACTTTCCCAGGATCCCAAATGTGCTCAAAAATATAGGACAGGTGAATAAATACTAAATCTTAATACAGACAACATGATGACGTGTGACATAAAATCAATAAAATGTCTTCTAATTTTTTTCCCAGGGACCAAATCAACCAGAAGAATGTCCTGTCCCACTGTTCTCTTTTTTCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGARCAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTTTGTGGGACCGGGGTAAGTTTCATTTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGCGGATGGTTTTGATCGTTTTTAAATTTTGTACTCCTCGTGGACAAGCCGACGCGTGAAATTTGAATTTTTGAGTTACAAATCAGCTAAAAACTTGATGTTTCGGTGTAAAACCGCTAGGAATCATTAAAAACTAACATTTCAAAAACATATTTAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>498 309 193</canonical_bands>
                <polymorphic_bands>691 309</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCCTTCTTTTCTCTTCCATAC</pcr_primer_p1>
		<pcr_primer_p2>AAATCCATGATTCCAAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTT</canonical_amplicon>
		<polymorphic_amplicon>TCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGARCAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15876</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>278157</contig_pos>
        <strand>+</strand>
        <context>TTTTGAAGGG[A/G]GGAGGCAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGG</left_flank>
        <right_flank>GGAGGCAAGAATTTTGGAATCATGGATTTTGTGGGACCGGGGTAAGTTTC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATGGACTCAATCAATGGACCCCATCAATATACCTTATCAATGGACCCCATCAATGTACCATCAACGCGCAATGGTCTTCTGTATGGTCTTTTTTGCGGCAATTGAGTCTCTACTTTCCCAGGATCCCAAATGTGCTCAAAAATATAGGACAGGTGAATAAATACTAAATCTTAATACAGACAACATGATGACGTGTGACATAAAATCAATAAAATGTCTTCTAATTTTTTTCCCAGGGACCAAATCAACCAGAAGAATGTCCTGTCCCACTGTTCTCTTTTTTCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTTTGTGGGACCGGGGTAAGTTTCATTTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGCGGATGGTTTTGATCGTTTTTAAATTTTGTACTCCTCGTGGACAAGCCGACGCGTGAAATTTGAATTTTTGAGTTACAAATCAGCTAAAAACTTGATGTTTCGGTGTAAAACCGCTAGGAATCATTAAAAACTAACATTTCAAAAACATATTTAAGATTTTATGTTTTGTACTCCTCGTGGACAAGTCAACGT</canonical>
            <polymorphic>CAATGGACTCAATCAATGGACCCCATCAATATACCTTATCAATGGACCCCATCAATGTACCATCAACGCGCAATGGTCTTCTGTATGGTCTTTTTTGCGGCAATTGAGTCTCTACTTTCCCAGGATCCCAAATGTGCTCAAAAATATAGGACAGGTGAATAAATACTAAATCTTAATACAGACAACATGATGACGTGTGACATAAAATCAATAAAATGTCTTCTAATTTTTTTCCCAGGGACCAAATCAACCAGAAGAATGTCCTGTCCCACTGTTCTCTTTTTTCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGRGGAGGCAAGAATTTTGGAATCATGGATTTTGTGGGACCGGGGTAAGTTTCATTTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGCGGATGGTTTTGATCGTTTTTAAATTTTGTACTCCTCGTGGACAAGCCGACGCGTGAAATTTGAATTTTTGAGTTACAAATCAGCTAAAAACTTGATGTTTCGGTGTAAAACCGCTAGGAATCATTAAAAACTAACATTTCAAAAACATATTTAAGATTTTATGTTTTGTACTCCTCGTGGACAAGTCAACGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATCACCTAATCACTTTATGTT</pcr_primer_p1>
		<pcr_primer_p2>ATAATCCCATAAATGAAACTTACC</pcr_primer_p2>
		<pcr_amplicon_size>215</pcr_amplicon_size>
		<canonical_amplicon>CGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTTTGTGGGACCGGGGTAAGTTTCATTTATGGGATTAT</canonical_amplicon>
		<polymorphic_amplicon>CGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGRGGAGGCAAGAATTTTGGAATCATGGATTTTGTGGGACCGGGGTAAGTTTCATTTATGGGATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15877</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>278285</contig_pos>
        <strand></strand>
        <context>cctatgatgg[T/A]rtctgcggst</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGG</left_flank>
        <right_flank>ATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATGTGCTCAAAAATATAGGACAGGTGAATAAATACTAAATCTTAATACAGACAACATGATGACGTGTGACATAAAATCAATAAAATGTCTTCTAATTTTTTTCCCAGGGACCAAATCAACCAGAAGAATGTCCTGTCCCACTGTTCTCTTTTTTCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTTTGTGGGACCGGGGTAAGTTTCATTTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGCGGATGGTTTTGATCGTTTTTAAATTTTGTACTCCTCGTGGACAAGCCGACGCGTGAAATTTGAATTTTTGAGTTACAAATCAGCTAAAAACTTGATGTTTCGGTGTAAAACCGCTAGGAATCATTAAAAACTAACATTTCAAAAACATATTTAAGATTTTATGTTTTGTACTCCTCGTGGACAAGTCAACGTTTAAATTTTGAACTTTCGGGTTAATTACAACTTAATACTTGATTTTTCTGTGTAAAATCGCTAGGAATCAGGAAAAATCGAATTTTCTAAGAAAAAGTAGATAATTGAAGATTTTGAATTTTGTACTC</canonical>
            <polymorphic>CAAATGTGCTCAAAAATATAGGACAGGTGAATAAATACTAAATCTTAATACAGACAACATGATGACGTGTGACATAAAATCAATAAAATGTCTTCTAATTTTTTTCCCAGGGACCAAATCAACCAGAAGAATGTCCTGTCCCACTGTTCTCTTTTTTCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTTTGTGGGACCGGGGTAAGTTTCATTTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGWATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGCGGATGGTTTTGATCGTTTTTAAATTTTGTACTCCTCGTGGACAAGCCGACGCGTGAAATTTGAATTTTTGAGTTACAAATCAGCTAAAAACTTGATGTTTCGGTGTAAAACCGCTAGGAATCATTAAAAACTAACATTTCAAAAACATATTTAAGATTTTATGTTTTGTACTCCTCGTGGACAAGTCAACGTTTAAATTTTGAACTTTCGGGTTAATTACAACTTAATACTTGATTTTTCTGTGTAAAATCGCTAGGAATCAGGAAAAATCGAATTTTCTAAGAAAAAGTAGATAATTGAAGATTTTGAATTTTGTACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATGGGATTATCTATTTATTTATGG</pcr_primer_p1>
		<pcr_primer_p2>GCTTGGTCGAATTTCAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGC</canonical_amplicon>
		<polymorphic_amplicon>TTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGWATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15878</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>278286</contig_pos>
        <strand></strand>
        <context>ctatgatggw[A/G]tctgcggstc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGT</left_flank>
        <right_flank>TCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGTGCTCAAAAATATAGGACAGGTGAATAAATACTAAATCTTAATACAGACAACATGATGACGTGTGACATAAAATCAATAAAATGTCTTCTAATTTTTTTCCCAGGGACCAAATCAACCAGAAGAATGTCCTGTCCCACTGTTCTCTTTTTTCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTTTGTGGGACCGGGGTAAGTTTCATTTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGCGGATGGTTTTGATCGTTTTTAAATTTTGTACTCCTCGTGGACAAGCCGACGCGTGAAATTTGAATTTTTGAGTTACAAATCAGCTAAAAACTTGATGTTTCGGTGTAAAACCGCTAGGAATCATTAAAAACTAACATTTCAAAAACATATTTAAGATTTTATGTTTTGTACTCCTCGTGGACAAGTCAACGTTTAAATTTTGAACTTTCGGGTTAATTACAACTTAATACTTGATTTTTCTGTGTAAAATCGCTAGGAATCAGGAAAAATCGAATTTTCTAAGAAAAAGTAGATAATTGAAGATTTTGAATTTTGTACTCC</canonical>
            <polymorphic>AAATGTGCTCAAAAATATAGGACAGGTGAATAAATACTAAATCTTAATACAGACAACATGATGACGTGTGACATAAAATCAATAAAATGTCTTCTAATTTTTTTCCCAGGGACCAAATCAACCAGAAGAATGTCCTGTCCCACTGTTCTCTTTTTTCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTTTGTGGGACCGGGGTAAGTTTCATTTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTRTCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGCGGATGGTTTTGATCGTTTTTAAATTTTGTACTCCTCGTGGACAAGCCGACGCGTGAAATTTGAATTTTTGAGTTACAAATCAGCTAAAAACTTGATGTTTCGGTGTAAAACCGCTAGGAATCATTAAAAACTAACATTTCAAAAACATATTTAAGATTTTATGTTTTGTACTCCTCGTGGACAAGTCAACGTTTAAATTTTGAACTTTCGGGTTAATTACAACTTAATACTTGATTTTTCTGTGTAAAATCGCTAGGAATCAGGAAAAATCGAATTTTCTAAGAAAAAGTAGATAATTGAAGATTTTGAATTTTGTACTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATGGGATTATCTATTTATTTATGG</pcr_primer_p1>
		<pcr_primer_p2>GCTTGGTCGAATTTCAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGC</canonical_amplicon>
		<polymorphic_amplicon>TTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTRTCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15880</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>280315</contig_pos>
        <strand></strand>
        <context>TAGAGCCGCC[G/T]GAAGAGCCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTCGAGAAGCTCCTGGTCTGATTCAAAGAGATATCAAACTAGAGCCGCC</left_flank>
        <right_flank>GAAGAGCCCATGGATGATCCTATAGAACCTATACCTCAGTCAACGATCCT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCATTTTCTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTATCAGTTGACATCTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAAATTATGGTCAAAAATTTGTGGAGCTATGAAAATACAAATTTCAGGGTAAAGAAGGCTGCCTTCTCCTTAACGAATGGTCCCCACCAGTATATATTACTTCTGCTGTAAAGGTTGAACCTCCAGAACCCCCTTCAGAATCAATCGAATCTTCCAGGGGTAATAAAAGGTTAGATTCTACTGAATATGGTTCTAAGAAAACTCAAAAACCATTCTGAAAAATTTCAGACCTTTTACTGAAAGACCGGAATCTGGAAATGATGAAAAACGAATGCGACTGGATGTTCGAGAAGCTCCTGGTCTGATTCAAAGAGATATCAAACTAGAGCCGCCGGAAGAGCCCATGGATGATCCTATAGAACCTATACCTCAGTCAACGATCCTTCAGAAGCAGCCTGTAGCTGTCCCCCAGAGTTTCAGGGAAGACGTAAGATTGAATTTTATTCAAACCCAGCTAGCTAGAGCGCCTCCGGCGCGATTTGGGATTTCTAGGTTCATAGATTCCTAGATTTCTAGATTTCTAGATTTTTAGATTCCTAGTTTCCTAGATTCCTGGATTCCAAGATTCCAAGATTTTCAGTTTTCTCGATTTCTCGATTTCTAGATTCTTAGATTCCTAATTTTCCAGATTTATTGAAGCTTGGATTTCTAGTCATATACTTCTAAATCAATCGGTTTTTTGAGGAAAAATTTCTAATATTCATTTTTTTCAGACCCAAACAACTACAGTATCCACCGACCCTTCAGTTTGTACAAAAATCACCTCCAACAAAAGAACCACCACTCACAGAAACTTCCAATCTCAAACTGATCTTTCTACCCGGCCCACGACGT</canonical>
            <polymorphic>TCTCATTTTCTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTATCAGTTGACATCTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAAATTATGGTCAAAAATTTGTGGAGCTATGAAAATACAAATTTCAGGGTAAAGAAGGCTGCCTTCTCCTTAACGAATGGTCCCCACCAGTATATATTACTTCTGCTGTAAAGGTTGAACCTCCAGAACCCCCTTCAGAATCAATCGAATCTTCCAGGGGTAATAAAAGGTTAGATTCTACTGAATATGGTTCTAAGAAAACTCAAAAACCATTCTGAAAAATTTCAGACCTTTTACTGAAAGACCGGAATCTGGAAATGATGAAAAACGAATGCGACTGGATGTTCGAGAAGCTCCTGGTCTGATTCAAAGAGATATCAAACTAGAGCCGCCKGAAGAGCCCATGGATGATCCTATAGAACCTATACCTCAGTCAACGATCCTTCAGAAGCAGCCTGTAGCTGTCCCCCAGAGTTTCAGGGAAGACGTAAGATTGAATTTTATTCAAACCCAGCTAGCTAGAGCGCCTCCGGCGCGATTTGGGATTTCTAGGTTCATAGATTCCTAGATTTCTAGATTTCTAGATTTTTAGATTCCTAGTTTCCTAGATTCCTGGATTCCAAGATTCCAAGATTTTCAGTTTTCTCGATTTCTCGATTTCTAGATTCTTAGATTCCTAATTTTCCAGATTTATTGAAGCTTGGATTTCTAGTCATATACTTCTAAATCAATCGGTTTTTTGAGGAAAAATTTCTAATATTCATTTTTTTCAGACCCAAACAACTACAGTATCCACCGACCCTTCAGTTTGTACAAAAATCACCTCCAACAAAAGAACCACCACTCACAGAAACTTCCAATCTCAAACTGATCTTTCTACCCGGCCCACGACGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>351 274 138 137 87 13</canonical_bands>
                <polymorphic_bands>351 274 225 137 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGTTCTAAGAAAACTCAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATCTTACGTCTTCCCTGAAACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGGTTCTAAGAAAACTCAAAAACCATTCTGAAAAATTTCAGACCTTTTACTGAAAGACCGGAATCTGGAAATGATGAAAAACGAATGCGACTGGATGTTCGAGAAGCTCCTGGTCTGATTCAAAGAGATATCAAACTAGAGCCGCCGGAAGAGCCCATGGATGATCCTATAGAACCTATACCTCAGTCAACGATCCTTCAGAAGCAGCCTGTAGCTGTCCCCCAGAGTTTCAGGGAAGACGTAAGAT</canonical_amplicon>
		<polymorphic_amplicon>TGGTTCTAAGAAAACTCAAAAACCATTCTGAAAAATTTCAGACCTTTTACTGAAAGACCGGAATCTGGAAATGATGAAAAACGAATGCGACTGGATGTTCGAGAAGCTCCTGGTCTGATTCAAAGAGATATCAAACTAGAGCCGCCKGAAGAGCCCATGGATGATCCTATAGAACCTATACCTCAGTCAACGATCCTTCAGAAGCAGCCTGTAGCTGTCCCCCAGAGTTTCAGGGAAGACGTAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15881</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>280269</contig_pos>
        <strand></strand>
        <context>CTGGATGTTC[G/C]AGAAGCTCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TGAAAGACCGGAATCTGGAAATGATGAAAAACGAATGCGACTGGATGTTC</left_flank>
        <right_flank>AGAAGCTCCTGGTCTGATTCAAAGAGATATCAAACTAGAGCCGCCGGAAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTATCAGTTGACATCTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAAATTATGGTCAAAAATTTGTGGAGCTATGAAAATACAAATTTCAGGGTAAAGAAGGCTGCCTTCTCCTTAACGAATGGTCCCCACCAGTATATATTACTTCTGCTGTAAAGGTTGAACCTCCAGAACCCCCTTCAGAATCAATCGAATCTTCCAGGGGTAATAAAAGGTTAGATTCTACTGAATATGGTTCTAAGAAAACTCAAAAACCATTCTGAAAAATTTCAGACCTTTTACTGAAAGACCGGAATCTGGAAATGATGAAAAACGAATGCGACTGGATGTTCGAGAAGCTCCTGGTCTGATTCAAAGAGATATCAAACTAGAGCCGCCGGAAGAGCCCATGGATGATCCTATAGAACCTATACCTCAGTCAACGATCCTTCAGAAGCAGCCTGTAGCTGTCCCCCAGAGTTTCAGGGAAGACGTAAGATTGAATTTTATTCAAACCCAGCTAGCTAGAGCGCCTCCGGCGCGATTTGGGATTTCTAGGTTCATAGATTCCTAGATTTCTAGATTTCTAGATTTTTAGATTCCTAGTTTCCTAGATTCCTGGATTCCAAGATTCCAAGATTTTCAGTTTTCTCGATTTCTCGATTTCTAGATTCTTAGATTCCTAATTTTCCAGATTTATTGAAGCTTGGATTTCTAGTCATATACTTCTAAATCAATCGGTTTTTTGAGGAAAAATTTCTAATATTCATTTTTTTCAGACCCAAACAACTACAGTATCCACCGACCCTTCAGTTTGTACAAAAATCACCTCCAACAAAAGAACCACCACTCAC</canonical>
            <polymorphic>ACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTATCAGTTGACATCTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAAATTATGGTCAAAAATTTGTGGAGCTATGAAAATACAAATTTCAGGGTAAAGAAGGCTGCCTTCTCCTTAACGAATGGTCCCCACCAGTATATATTACTTCTGCTGTAAAGGTTGAACCTCCAGAACCCCCTTCAGAATCAATCGAATCTTCCAGGGGTAATAAAAGGTTAGATTCTACTGAATATGGTTCTAAGAAAACTCAAAAACCATTCTGAAAAATTTCAGACCTTTTACTGAAAGACCGGAATCTGGAAATGATGAAAAACGAATGCGACTGGATGTTCSAGAAGCTCCTGGTCTGATTCAAAGAGATATCAAACTAGAGCCGCCGGAAGAGCCCATGGATGATCCTATAGAACCTATACCTCAGTCAACGATCCTTCAGAAGCAGCCTGTAGCTGTCCCCCAGAGTTTCAGGGAAGACGTAAGATTGAATTTTATTCAAACCCAGCTAGCTAGAGCGCCTCCGGCGCGATTTGGGATTTCTAGGTTCATAGATTCCTAGATTTCTAGATTTCTAGATTTTTAGATTCCTAGTTTCCTAGATTCCTGGATTCCAAGATTCCAAGATTTTCAGTTTTCTCGATTTCTCGATTTCTAGATTCTTAGATTCCTAATTTTCCAGATTTATTGAAGCTTGGATTTCTAGTCATATACTTCTAAATCAATCGGTTTTTTGAGGAAAAATTTCTAATATTCATTTTTTTCAGACCCAAACAACTACAGTATCCACCGACCCTTCAGTTTGTACAAAAATCACCTCCAACAAAAGAACCACCACTCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>358 300 193 141 8</canonical_bands>
                <polymorphic_bands>441 358 193 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGTTCTAAGAAAACTCAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATCTTACGTCTTCCCTGAAACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGGTTCTAAGAAAACTCAAAAACCATTCTGAAAAATTTCAGACCTTTTACTGAAAGACCGGAATCTGGAAATGATGAAAAACGAATGCGACTGGATGTTCGAGAAGCTCCTGGTCTGATTCAAAGAGATATCAAACTAGAGCCGCCGGAAGAGCCCATGGATGATCCTATAGAACCTATACCTCAGTCAACGATCCTTCAGAAGCAGCCTGTAGCTGTCCCCCAGAGTTTCAGGGAAGACGTAAGAT</canonical_amplicon>
		<polymorphic_amplicon>TGGTTCTAAGAAAACTCAAAAACCATTCTGAAAAATTTCAGACCTTTTACTGAAAGACCGGAATCTGGAAATGATGAAAAACGAATGCGACTGGATGTTCSAGAAGCTCCTGGTCTGATTCAAAGAGATATCAAACTAGAGCCGCCGGAAGAGCCCATGGATGATCCTATAGAACCTATACCTCAGTCAACGATCCTTCAGAAGCAGCCTGTAGCTGTCCCCCAGAGTTTCAGGGAAGACGTAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15882</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>280245</contig_pos>
        <strand></strand>
        <context>GGAAATGATG[A/G]AAAACGAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGAAAAATTTCAGACCTTTTACTGAAAGACCGGAATCTGGAAATGATG</left_flank>
        <right_flank>AAAACGAATGCGACTGGATGTTCGAGAAGCTCCTGGTCTGATTCAAAGAG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATACATTTTGGTCTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTATCAGTTGACATCTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAAATTATGGTCAAAAATTTGTGGAGCTATGAAAATACAAATTTCAGGGTAAAGAAGGCTGCCTTCTCCTTAACGAATGGTCCCCACCAGTATATATTACTTCTGCTGTAAAGGTTGAACCTCCAGAACCCCCTTCAGAATCAATCGAATCTTCCAGGGGTAATAAAAGGTTAGATTCTACTGAATATGGTTCTAAGAAAACTCAAAAACCATTCTGAAAAATTTCAGACCTTTTACTGAAAGACCGGAATCTGGAAATGATGAAAAACGAATGCGACTGGATGTTCGAGAAGCTCCTGGTCTGATTCAAAGAGATATCAAACTAGAGCCGCCGGAAGAGCCCATGGATGATCCTATAGAACCTATACCTCAGTCAACGATCCTTCAGAAGCAGCCTGTAGCTGTCCCCCAGAGTTTCAGGGAAGACGTAAGATTGAATTTTATTCAAACCCAGCTAGCTAGAGCGCCTCCGGCGCGATTTGGGATTTCTAGGTTCATAGATTCCTAGATTTCTAGATTTCTAGATTTTTAGATTCCTAGTTTCCTAGATTCCTGGATTCCAAGATTCCAAGATTTTCAGTTTTCTCGATTTCTCGATTTCTAGATTCTTAGATTCCTAATTTTCCAGATTTATTGAAGCTTGGATTTCTAGTCATATACTTCTAAATCAATCGGTTTTTTGAGGAAAAATTTCTAATATTCATTTTTTTCAGACCCAAACAACTACAGTATCCACCGACCCTTCAGTTTGTACAAAAATCACC</canonical>
            <polymorphic>TAATACATTTTGGTCTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTATCAGTTGACATCTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAAATTATGGTCAAAAATTTGTGGAGCTATGAAAATACAAATTTCAGGGTAAAGAAGGCTGCCTTCTCCTTAACGAATGGTCCCCACCAGTATATATTACTTCTGCTGTAAAGGTTGAACCTCCAGAACCCCCTTCAGAATCAATCGAATCTTCCAGGGGTAATAAAAGGTTAGATTCTACTGAATATGGTTCTAAGAAAACTCAAAAACCATTCTGAAAAATTTCAGACCTTTTACTGAAAGACCGGAATCTGGAAATGATGRAAAACGAATGCGACTGGATGTTCGAGAAGCTCCTGGTCTGATTCAAAGAGATATCAAACTAGAGCCGCCGGAAGAGCCCATGGATGATCCTATAGAACCTATACCTCAGTCAACGATCCTTCAGAAGCAGCCTGTAGCTGTCCCCCAGAGTTTCAGGGAAGACGTAAGATTGAATTTTATTCAAACCCAGCTAGCTAGAGCGCCTCCGGCGCGATTTGGGATTTCTAGGTTCATAGATTCCTAGATTTCTAGATTTCTAGATTTTTAGATTCCTAGTTTCCTAGATTCCTGGATTCCAAGATTCCAAGATTTTCAGTTTTCTCGATTTCTCGATTTCTAGATTCTTAGATTCCTAATTTTCCAGATTTATTGAAGCTTGGATTTCTAGTCATATACTTCTAAATCAATCGGTTTTTTGAGGAAAAATTTCTAATATTCATTTTTTTCAGACCCAAACAACTACAGTATCCACCGACCCTTCAGTTTGTACAAAAATCACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTTCTAAGAAAACTCAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATCTTACGTCTTCCCTGAAACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGGTTCTAAGAAAACTCAAAAACCATTCTGAAAAATTTCAGACCTTTTACTGAAAGACCGGAATCTGGAAATGATGAAAAACGAATGCGACTGGATGTTCGAGAAGCTCCTGGTCTGATTCAAAGAGATATCAAACTAGAGCCGCCGGAAGAGCCCATGGATGATCCTATAGAACCTATACCTCAGTCAACGATCCTTCAGAAGCAGCCTGTAGCTGTCCCCCAGAGTTTCAGGGAAGACGTAAGAT</canonical_amplicon>
		<polymorphic_amplicon>TGGTTCTAAGAAAACTCAAAAACCATTCTGAAAAATTTCAGACCTTTTACTGAAAGACCGGAATCTGGAAATGATGRAAAACGAATGCGACTGGATGTTCGAGAAGCTCCTGGTCTGATTCAAAGAGATATCAAACTAGAGCCGCCGGAAGAGCCCATGGATGATCCTATAGAACCTATACCTCAGTCAACGATCCTTCAGAAGCAGCCTGTAGCTGTCCCCCAGAGTTTCAGGGAAGACGTAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15883</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>280215</contig_pos>
        <strand></strand>
        <context>TTCAGACCTT[T/C]TACTGAAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATATGGTTCTAAGAAAACTCAAAAACCATTCTGAAAAATTTCAGACCTT</left_flank>
        <right_flank>TACTGAAAGACCGGAATCTGGAAATGATGAAAAACGAATGCGACTGGATG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTAGAAATGAAGCGGTGAGTTTTTGAGATAATACATTTTGGTCTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTATCAGTTGACATCTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAAATTATGGTCAAAAATTTGTGGAGCTATGAAAATACAAATTTCAGGGTAAAGAAGGCTGCCTTCTCCTTAACGAATGGTCCCCACCAGTATATATTACTTCTGCTGTAAAGGTTGAACCTCCAGAACCCCCTTCAGAATCAATCGAATCTTCCAGGGGTAATAAAAGGTTAGATTCTACTGAATATGGTTCTAAGAAAACTCAAAAACCATTCTGAAAAATTTCAGACCTTTTACTGAAAGACCGGAATCTGGAAATGATGAAAAACGAATGCGACTGGATGTTCGAGAAGCTCCTGGTCTGATTCAAAGAGATATCAAACTAGAGCCGCCGGAAGAGCCCATGGATGATCCTATAGAACCTATACCTCAGTCAACGATCCTTCAGAAGCAGCCTGTAGCTGTCCCCCAGAGTTTCAGGGAAGACGTAAGATTGAATTTTATTCAAACCCAGCTAGCTAGAGCGCCTCCGGCGCGATTTGGGATTTCTAGGTTCATAGATTCCTAGATTTCTAGATTTCTAGATTTTTAGATTCCTAGTTTCCTAGATTCCTGGATTCCAAGATTCCAAGATTTTCAGTTTTCTCGATTTCTCGATTTCTAGATTCTTAGATTCCTAATTTTCCAGATTTATTGAAGCTTGGATTTCTAGTCATATACTTCTAAATCAATCGGTTTTTTGAGGAAAAATTTCTAATATTCATTTTTTTCAGACCCAAACAACTACAGTATCC</canonical>
            <polymorphic>GTTTAGAAATGAAGCGGTGAGTTTTTGAGATAATACATTTTGGTCTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTATCAGTTGACATCTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAAATTATGGTCAAAAATTTGTGGAGCTATGAAAATACAAATTTCAGGGTAAAGAAGGCTGCCTTCTCCTTAACGAATGGTCCCCACCAGTATATATTACTTCTGCTGTAAAGGTTGAACCTCCAGAACCCCCTTCAGAATCAATCGAATCTTCCAGGGGTAATAAAAGGTTAGATTCTACTGAATATGGTTCTAAGAAAACTCAAAAACCATTCTGAAAAATTTCAGACCTTYTACTGAAAGACCGGAATCTGGAAATGATGAAAAACGAATGCGACTGGATGTTCGAGAAGCTCCTGGTCTGATTCAAAGAGATATCAAACTAGAGCCGCCGGAAGAGCCCATGGATGATCCTATAGAACCTATACCTCAGTCAACGATCCTTCAGAAGCAGCCTGTAGCTGTCCCCCAGAGTTTCAGGGAAGACGTAAGATTGAATTTTATTCAAACCCAGCTAGCTAGAGCGCCTCCGGCGCGATTTGGGATTTCTAGGTTCATAGATTCCTAGATTTCTAGATTTCTAGATTTTTAGATTCCTAGTTTCCTAGATTCCTGGATTCCAAGATTCCAAGATTTTCAGTTTTCTCGATTTCTCGATTTCTAGATTCTTAGATTCCTAATTTTCCAGATTTATTGAAGCTTGGATTTCTAGTCATATACTTCTAAATCAATCGGTTTTTTGAGGAAAAATTTCTAATATTCATTTTTTTCAGACCCAAACAACTACAGTATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTACTTCTGCTGTAAAGGTTGA</pcr_primer_p1>
		<pcr_primer_p2>CGGCTCTAGTTTGATATCTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>ATTACTTCTGCTGTAAAGGTTGAACCTCCAGAACCCCCTTCAGAATCAATCGAATCTTCCAGGGGTAATAAAAGGTTAGATTCTACTGAATATGGTTCTAAGAAAACTCAAAAACCATTCTGAAAAATTTCAGACCTTTTACTGAAAGACCGGAATCTGGAAATGATGAAAAACGAATGCGACTGGATGTTCGAGAAGCTCCTGGTCTGATTCAAAGAGATATCAAACTAGAGCCG</canonical_amplicon>
		<polymorphic_amplicon>ATTACTTCTGCTGTAAAGGTTGAACCTCCAGAACCCCCTTCAGAATCAATCGAATCTTCCAGGGGTAATAAAAGGTTAGATTCTACTGAATATGGTTCTAAGAAAACTCAAAAACCATTCTGAAAAATTTCAGACCTTYTACTGAAAGACCGGAATCTGGAAATGATGAAAAACGAATGCGACTGGATGTTCGAGAAGCTCCTGGTCTGATTCAAAGAGATATCAAACTAGAGCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15885</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>280111</contig_pos>
        <strand></strand>
        <context>CCTCCAGAAY[C/A]CCCTTCAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GTCCCCACCAGTATATATTACTTCTGCTGTAAAGGTTGAACCTCCAGAAC</left_flank>
        <right_flank>CCCTTCAGAATCAATCGAATCTTCCAGGGGTAATAAAAGGTTAGATTCTA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTCGAAACATATCGTTTGGATTCCCTTACGAAATGAAGGAATAGTTTATTTTAAATGTTTGGAGGATGCTCAGAAGGCGAGAATGGCTTACAATAATTTTTGGTTTAGAAATGAAGCGGTGAGTTTTTGAGATAATACATTTTGGTCTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTATCAGTTGACATCTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAAATTATGGTCAAAAATTTGTGGAGCTATGAAAATACAAATTTCAGGGTAAAGAAGGCTGCCTTCTCCTTAACGAATGGTCCCCACCAGTATATATTACTTCTGCTGTAAAGGTTGAACCTCCAGAACCCCCTTCAGAATCAATCGAATCTTCCAGGGGTAATAAAAGGTTAGATTCTACTGAATATGGTTCTAAGAAAACTCAAAAACCATTCTGAAAAATTTCAGACCTTTTACTGAAAGACCGGAATCTGGAAATGATGAAAAACGAATGCGACTGGATGTTCGAGAAGCTCCTGGTCTGATTCAAAGAGATATCAAACTAGAGCCGCCGGAAGAGCCCATGGATGATCCTATAGAACCTATACCTCAGTCAACGATCCTTCAGAAGCAGCCTGTAGCTGTCCCCCAGAGTTTCAGGGAAGACGTAAGATTGAATTTTATTCAAACCCAGCTAGCTAGAGCGCCTCCGGCGCGATTTGGGATTTCTAGGTTCATAGATTCCTAGATTTCTAGATTTCTAGATTTTTAGATTCCTAGTTTCCTAGATTCCTGGATTCCAAGATTCCAAGATTTTCAGTTTTCTCGATTTCTCGATTTCTAGATTCTTAGATTCCTAATTTTCCAGAT</canonical>
            <polymorphic>GAGTCGAAACATATCGTTTGGATTCCCTTACGAAATGAAGGAATAGTTTATTTTAAATGTTTGGAGGATGCTCAGAAGGCGAGAATGGCTTACAATAATTTTTGGTTTAGAAATGAAGCGGTGAGTTTTTGAGATAATACATTTTGGTCTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTATCAGTTGACATCTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAAATTATGGTCAAAAATTTGTGGAGCTATGAAAATACAAATTTCAGGGTAAAGAAGGCTGCCTTCTCCTTAACGAATGGTCCCCACCAGTATATATTACTTCTGCTGTAAAGGTTGAACCTCCAGAACMCCCTTCAGAATCAATCGAATCTTCCAGGGGTAATAAAAGGTTAGATTCTACTGAATATGGTTCTAAGAAAACTCAAAAACCATTCTGAAAAATTTCAGACCTTTTACTGAAAGACCGGAATCTGGAAATGATGAAAAACGAATGCGACTGGATGTTCGAGAAGCTCCTGGTCTGATTCAAAGAGATATCAAACTAGAGCCGCCGGAAGAGCCCATGGATGATCCTATAGAACCTATACCTCAGTCAACGATCCTTCAGAAGCAGCCTGTAGCTGTCCCCCAGAGTTTCAGGGAAGACGTAAGATTGAATTTTATTCAAACCCAGCTAGCTAGAGCGCCTCCGGCGCGATTTGGGATTTCTAGGTTCATAGATTCCTAGATTTCTAGATTTCTAGATTTTTAGATTCCTAGTTTCCTAGATTCCTGGATTCCAAGATTCCAAGATTTTCAGTTTTCTCGATTTCTCGATTTCTAGATTCTTAGATTCCTAATTTTCCAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTGTGGAGCTATGAAAATA</pcr_primer_p1>
		<pcr_primer_p2>CAGATTCCGGTCTTTCAGTA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AAATTTGTGGAGCTATGAAAATACAAATTTCAGGGTAAAGAAGGCTGCCTTCTCCTTAACGAATGGTCCCCACCAGTATATATTACTTCTGCTGTAAAGGTTGAACCTCCAGAACCCCCTTCAGAATCAATCGAATCTTCCAGGGGTAATAAAAGGTTAGATTCTACTGAATATGGTTCTAAGAAAACTCAAAAACCATTCTGAAAAATTTCAGACCTTTTACTGAAAGACCGGAATCTG</canonical_amplicon>
		<polymorphic_amplicon>AAATTTGTGGAGCTATGAAAATACAAATTTCAGGGTAAAGAAGGCTGCCTTCTCCTTAACGAATGGTCCCCACCAGTATATATTACTTCTGCTGTAAAGGTTGAACCTCCAGAACMCCCTTCAGAATCAATCGAATCTTCCAGGGGTAATAAAAGGTTAGATTCTACTGAATATGGTTCTAAGAAAACTCAAAAACCATTCTGAAAAATTTCAGACCTTTTACTGAAAGACCGGAATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15886</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>280110</contig_pos>
        <strand></strand>
        <context>ACCTCCAGAA[C/T]MCCCTTCAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTCCCCACCAGTATATATTACTTCTGCTGTAAAGGTTGAACCTCCAGAA</left_flank>
        <right_flank>CCCCTTCAGAATCAATCGAATCTTCCAGGGGTAATAAAAGGTTAGATTCT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGTCGAAACATATCGTTTGGATTCCCTTACGAAATGAAGGAATAGTTTATTTTAAATGTTTGGAGGATGCTCAGAAGGCGAGAATGGCTTACAATAATTTTTGGTTTAGAAATGAAGCGGTGAGTTTTTGAGATAATACATTTTGGTCTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTATCAGTTGACATCTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAAATTATGGTCAAAAATTTGTGGAGCTATGAAAATACAAATTTCAGGGTAAAGAAGGCTGCCTTCTCCTTAACGAATGGTCCCCACCAGTATATATTACTTCTGCTGTAAAGGTTGAACCTCCAGAACCCCCTTCAGAATCAATCGAATCTTCCAGGGGTAATAAAAGGTTAGATTCTACTGAATATGGTTCTAAGAAAACTCAAAAACCATTCTGAAAAATTTCAGACCTTTTACTGAAAGACCGGAATCTGGAAATGATGAAAAACGAATGCGACTGGATGTTCGAGAAGCTCCTGGTCTGATTCAAAGAGATATCAAACTAGAGCCGCCGGAAGAGCCCATGGATGATCCTATAGAACCTATACCTCAGTCAACGATCCTTCAGAAGCAGCCTGTAGCTGTCCCCCAGAGTTTCAGGGAAGACGTAAGATTGAATTTTATTCAAACCCAGCTAGCTAGAGCGCCTCCGGCGCGATTTGGGATTTCTAGGTTCATAGATTCCTAGATTTCTAGATTTCTAGATTTTTAGATTCCTAGTTTCCTAGATTCCTGGATTCCAAGATTCCAAGATTTTCAGTTTTCTCGATTTCTCGATTTCTAGATTCTTAGATTCCTAATTTTCCAGA</canonical>
            <polymorphic>GGAGTCGAAACATATCGTTTGGATTCCCTTACGAAATGAAGGAATAGTTTATTTTAAATGTTTGGAGGATGCTCAGAAGGCGAGAATGGCTTACAATAATTTTTGGTTTAGAAATGAAGCGGTGAGTTTTTGAGATAATACATTTTGGTCTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTATCAGTTGACATCTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAAATTATGGTCAAAAATTTGTGGAGCTATGAAAATACAAATTTCAGGGTAAAGAAGGCTGCCTTCTCCTTAACGAATGGTCCCCACCAGTATATATTACTTCTGCTGTAAAGGTTGAACCTCCAGAAYCCCCTTCAGAATCAATCGAATCTTCCAGGGGTAATAAAAGGTTAGATTCTACTGAATATGGTTCTAAGAAAACTCAAAAACCATTCTGAAAAATTTCAGACCTTTTACTGAAAGACCGGAATCTGGAAATGATGAAAAACGAATGCGACTGGATGTTCGAGAAGCTCCTGGTCTGATTCAAAGAGATATCAAACTAGAGCCGCCGGAAGAGCCCATGGATGATCCTATAGAACCTATACCTCAGTCAACGATCCTTCAGAAGCAGCCTGTAGCTGTCCCCCAGAGTTTCAGGGAAGACGTAAGATTGAATTTTATTCAAACCCAGCTAGCTAGAGCGCCTCCGGCGCGATTTGGGATTTCTAGGTTCATAGATTCCTAGATTTCTAGATTTCTAGATTTTTAGATTCCTAGTTTCCTAGATTCCTGGATTCCAAGATTCCAAGATTTTCAGTTTTCTCGATTTCTCGATTTCTAGATTCTTAGATTCCTAATTTTCCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTGTGGAGCTATGAAAATA</pcr_primer_p1>
		<pcr_primer_p2>CAGATTCCGGTCTTTCAGTA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AAATTTGTGGAGCTATGAAAATACAAATTTCAGGGTAAAGAAGGCTGCCTTCTCCTTAACGAATGGTCCCCACCAGTATATATTACTTCTGCTGTAAAGGTTGAACCTCCAGAACCCCCTTCAGAATCAATCGAATCTTCCAGGGGTAATAAAAGGTTAGATTCTACTGAATATGGTTCTAAGAAAACTCAAAAACCATTCTGAAAAATTTCAGACCTTTTACTGAAAGACCGGAATCTG</canonical_amplicon>
		<polymorphic_amplicon>AAATTTGTGGAGCTATGAAAATACAAATTTCAGGGTAAAGAAGGCTGCCTTCTCCTTAACGAATGGTCCCCACCAGTATATATTACTTCTGCTGTAAAGGTTGAACCTCCAGAAYCCCCTTCAGAATCAATCGAATCTTCCAGGGGTAATAAAAGGTTAGATTCTACTGAATATGGTTCTAAGAAAACTCAAAAACCATTCTGAAAAATTTCAGACCTTTTACTGAAAGACCGGAATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15887</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>323211</contig_pos>
        <strand>+</strand>
        <context>TGAGGCTTAC[A/G]TATGAACATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCACTGAAAAAAATTGAAATTTACGTGAAAATCTCAAATTGAGGCTTAC</left_flank>
        <right_flank>TATGAACATGAAGAGCCCAAGAATTGAAACCGAAAAATCAATTTCAGGTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAGTTGGCAATTTGGGAATCCGAGAAGAGCCAGATATGCGTCAGTTGGATTGATTAATTTGATGTAGGAACTGTTTTATTGGAATCTCTTTGTATTTATTTATGAAAAAGTTAAAATCTCAATACCCGAAATCTCTTTTTTTCCGTTTGAAAGTTTTGAAATCTCATCGTTCATAGGACCTAATTTTTGATCTAATTTTGTTAAACTCGGTTAATTTTTGTATCCTTTTTTTAACCACATTTTTTGTATGATGCATATATCTTTCATCTCCTTGGATCCTCATCTAATAATTCAAAACAAAATGAATCTTTTTAAAAAATCCTGTAATACAGAAGTCGAGAGTTTTAACAATTTTGTTCAAGTGAATATAGAATGAATATTCAGTCTTTTTTGCCGGGGAAATGACGATGCCGGGGAAATGATGATGTATCCTGTTGCAACAAAATCACCACTGAAAAAAATTGAAATTTACGTGAAAATCTCAAATTGAGGCTTACATATGAACATGAAGAGCCCAAGAATTGAAACCGAAAAATCAATTTCAGGTCTAATTTGCATCCCACAGTCGGTTATGTTCTCGGAAATAATTTTAACTTCATAGTAATTTTCTGATGTGATAATTTCAGCAGTATTAAATTTAGAATTCTTGAAACTAGATAACATCCCATCAAACATTCCAGATGGATCACTTGAACACTTGTTAGTAGTTTCGATCTTAATTATTTTGGTTTTTGATAGAAAAAAGATAAGAATCAGTAAGCAACTATCATCTTCAATCTAAGCTTAATAACCTTGAAAGAAACCTTCTCTAGAGTTTCTGACTCCTCTTGATCATTCCTTATCTTTCTAACATCTCCTGCTCCATACAGTACACACATCAATGAACTATTCGAATAAGCCAAAAAACAACTGTATTTCAAGAAACATATCTGGACACATTCATCCCATGCTCCCGTGTTTACTGACATTGGGAAACTGGAGTATGGCTCAGGGGCTCC</canonical>
            <polymorphic>AATAGTTGGCAATTTGGGAATCCGAGAAGAGCCAGATATGCGTCAGTTGGATTGATTAATTTGATGTAGGAACTGTTTTATTGGAATCTCTTTGTATTTATTTATGAAAAAGTTAAAATCTCAATACCCGAAATCTCTTTTTTTCCGTTTGAAAGTTTTGAAATCTCATCGTTCATAGGACCTAATTTTTGATCTAATTTTGTTAAACTCGGTTAATTTTTGTATCCTTTTTTTAACCACATTTTTTGTATGATGCATATATCTTTCATCTCCTTGGATCCTCATCTAATAATTCAAAACAAAATGAATCTTTTTAAAAAATCCTGTAATACAGAAGTCGAGAGTTTTAACAATTTTGTTCAAGTGAATATAGAATGAATATTCAGTCTTTTTTGCCGGGGAAATGACGATGCCGGGGAAATGATGATGTATCCTGTTGCAACAAAATCACCACTGAAAAAAATTGAAATTTACGTGAAAATCTCAAATTGAGGCTTACRTATGAACATGAAGAGCCCAAGAATTGAAACCGAAAAATCAATTTCAGGTCTAATTTGCATCCCACAGTCGGTTATGTTCTCGGAAATAATTTTAACTTCATAGTAATTTTCTGATGTGATAATTTCAGCAGTATTAAATTTAGAATTCTTGAAACTAGATAACATCCCATCAAACATTCCAGATGGATCACTTGAACACTTGTTAGTAGTTTCGATCTTAATTATTTTGGTTTTTGATAGAAAAAAGATAAGAATCAGTAAGCAACTATCATCTTCAATCTAAGCTTAATAACCTTGAAAGAAACCTTCTCTAGAGTTTCTGACTCCTCTTGATCATTCCTTATCTTTCTAACATCTCCTGCTCCATACAGTACACACATCAATGAACTATTCGAATAAGCCAAAAAACAACTGTATTTCAAGAAACATATCTGGACACATTCATCCCATGCTCCCGTGTTTACTGACATTGGGAAACTGGAGTATGGCTCAGGGGCTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATATG</site>
                <isoschizomers>
                    <enzyme>FauNDI</enzyme>
                    <enzyme>NdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAATGATGATGTATCCTGTT</pcr_primer_p1>
		<pcr_primer_p2>TGGGATGTTATCTAGTTTCAAGA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GGAAATGATGATGTATCCTGTTGCAACAAAATCACCACTGAAAAAAATTGAAATTTACGTGAAAATCTCAAATTGAGGCTTACATATGAACATGAAGAGCCCAAGAATTGAAACCGAAAAATCAATTTCAGGTCTAATTTGCATCCCACAGTCGGTTATGTTCTCGGAAATAATTTTAACTTCATAGTAATTTTCTGATGTGATAATTTCAGCAGTATTAAATTTAGAATTCTTGAAACTAGATAACATCCCA</canonical_amplicon>
		<polymorphic_amplicon>GGAAATGATGATGTATCCTGTTGCAACAAAATCACCACTGAAAAAAATTGAAATTTACGTGAAAATCTCAAATTGAGGCTTACRTATGAACATGAAGAGCCCAAGAATTGAAACCGAAAAATCAATTTCAGGTCTAATTTGCATCCCACAGTCGGTTATGTTCTCGGAAATAATTTTAACTTCATAGTAATTTTCTGATGTGATAATTTCAGCAGTATTAAATTTAGAATTCTTGAAACTAGATAACATCCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15888</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>323540</contig_pos>
        <strand>+</strand>
        <context>TCTGACTCCT[C/T]TTGATCATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTAAGCTTAATAACCTTGAAAGAAACCTTCTCTAGAGTTTCTGACTCCT</left_flank>
        <right_flank>TTGATCATTCCTTATCTTTCTAACATCTCCTGCTCCATACAGTACACACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACAGAAGTCGAGAGTTTTAACAATTTTGTTCAAGTGAATATAGAATGAATATTCAGTCTTTTTTGCCGGGGAAATGACGATGCCGGGGAAATGATGATGTATCCTGTTGCAACAAAATCACCACTGAAAAAAATTGAAATTTACGTGAAAATCTCAAATTGAGGCTTACATATGAACATGAAGAGCCCAAGAATTGAAACCGAAAAATCAATTTCAGGTCTAATTTGCATCCCACAGTCGGTTATGTTCTCGGAAATAATTTTAACTTCATAGTAATTTTCTGATGTGATAATTTCAGCAGTATTAAATTTAGAATTCTTGAAACTAGATAACATCCCATCAAACATTCCAGATGGATCACTTGAACACTTGTTAGTAGTTTCGATCTTAATTATTTTGGTTTTTGATAGAAAAAAGATAAGAATCAGTAAGCAACTATCATCTTCAATCTAAGCTTAATAACCTTGAAAGAAACCTTCTCTAGAGTTTCTGACTCCTCTTGATCATTCCTTATCTTTCTAACATCTCCTGCTCCATACAGTACACACATCAATGAACTATTCGAATAAGCCAAAAAACAACTGTATTTCAAGAAACATATCTGGACACATTCATCCCATGCTCCCGTGTTTACTGACATTGGGAAACTGGAGTATGGCTCAGGGGCTCCCCTTACGGTCACCATTTTGTAATCTTTCTCTTGAATTTTGAGATGGGAAAAATAGGAAAAACAAAACTGAAATCAGACGGGAAGGATTCATTTTTGAGACAGGGAAGTGAAAAAGAATGAAGAGCAAAAGTGTGGAAAACTTTGAAAAGTCGTTGTCATGGTTTTTGGTATCTAGGAGATTTTCACAGCTTGAAGGCAAAGTCGATTTCTGGTTTTTAGTGAAGTTTTGAACTCTAGATCTTCGATTCTTCAGATGTTCAAAACTCAAAAAATTGAAAATAGGAGAAAAAGTTTTATTTTCAAAAAATAACCCGTAAAAATTTCAAAAA</canonical>
            <polymorphic>TACAGAAGTCGAGAGTTTTAACAATTTTGTTCAAGTGAATATAGAATGAATATTCAGTCTTTTTTGCCGGGGAAATGACGATGCCGGGGAAATGATGATGTATCCTGTTGCAACAAAATCACCACTGAAAAAAATTGAAATTTACGTGAAAATCTCAAATTGAGGCTTACATATGAACATGAAGAGCCCAAGAATTGAAACCGAAAAATCAATTTCAGGTCTAATTTGCATCCCACAGTCGGTTATGTTCTCGGAAATAATTTTAACTTCATAGTAATTTTCTGATGTGATAATTTCAGCAGTATTAAATTTAGAATTCTTGAAACTAGATAACATCCCATCAAACATTCCAGATGGATCACTTGAACACTTGTTAGTAGTTTCGATCTTAATTATTTTGGTTTTTGATAGAAAAAAGATAAGAATCAGTAAGCAACTATCATCTTCAATCTAAGCTTAATAACCTTGAAAGAAACCTTCTCTAGAGTTTCTGACTCCTYTTGATCATTCCTTATCTTTCTAACATCTCCTGCTCCATACAGTACACACATCAATGAACTATTCGAATAAGCCAAAAAACAACTGTATTTCAAGAAACATATCTGGACACATTCATCCCATGCTCCCGTGTTTACTGACATTGGGAAACTGGAGTATGGCTCAGGGGCTCCCCTTACGGTCACCATTTTGTAATCTTTCTCTTGAATTTTGAGATGGGAAAAATAGGAAAAACAAAACTGAAATCAGACGGGAAGGATTCATTTTTGAGACAGGGAAGTGAAAAAGAATGAAGAGCAAAAGTGTGGAAAACTTTGAAAAGTCGTTGTCATGGTTTTTGGTATCTAGGAGATTTTCACAGCTTGAAGGCAAAGTCGATTTCTGGTTTTTAGTGAAGTTTTGAACTCTAGATCTTCGATTCTTCAGATGTTCAAAACTCAAAAAATTGAAAATAGGAGAAAAAGTTTTATTTTCAAAAAATAACCCGTAAAAATTTCAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>309 204 132 98 95 91 31 18 12 10</canonical_bands>
                <polymorphic_bands>309 204 132 109 98 95 31 12 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTAGATAACATCCCATCAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTCGAATAGTTCATTGATGTGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAACTAGATAACATCCCATCAAACATTCCAGATGGATCACTTGAACACTTGTTAGTAGTTTCGATCTTAATTATTTTGGTTTTTGATAGAAAAAAGATAAGAATCAGTAAGCAACTATCATCTTCAATCTAAGCTTAATAACCTTGAAAGAAACCTTCTCTAGAGTTTCTGACTCCTCTTGATCATTCCTTATCTTTCTAACATCTCCTGCTCCATACAGTACACACATCAATGAACTATTCGAAT</canonical_amplicon>
		<polymorphic_amplicon>AAACTAGATAACATCCCATCAAACATTCCAGATGGATCACTTGAACACTTGTTAGTAGTTTCGATCTTAATTATTTTGGTTTTTGATAGAAAAAAGATAAGAATCAGTAAGCAACTATCATCTTCAATCTAAGCTTAATAACCTTGAAAGAAACCTTCTCTAGAGTTTCTGACTCCTYTTGATCATTCCTTATCTTTCTAACATCTCCTGCTCCATACAGTACACACATCAATGAACTATTCGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15889</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>323748</contig_pos>
        <strand>+</strand>
        <context>TCTCTTGAAT[A/T]KWGAGATGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGCTCAGGGGCTCCCCTTACGGTCACCATTTTGTAATCTTTCTCTTGAAT</left_flank>
        <right_flank>TTGAGATGGGAAAAATAGGAAAAACAAAACTGAAATCAGACGGGAAGGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAATTTCAGGTCTAATTTGCATCCCACAGTCGGTTATGTTCTCGGAAATAATTTTAACTTCATAGTAATTTTCTGATGTGATAATTTCAGCAGTATTAAATTTAGAATTCTTGAAACTAGATAACATCCCATCAAACATTCCAGATGGATCACTTGAACACTTGTTAGTAGTTTCGATCTTAATTATTTTGGTTTTTGATAGAAAAAAGATAAGAATCAGTAAGCAACTATCATCTTCAATCTAAGCTTAATAACCTTGAAAGAAACCTTCTCTAGAGTTTCTGACTCCTCTTGATCATTCCTTATCTTTCTAACATCTCCTGCTCCATACAGTACACACATCAATGAACTATTCGAATAAGCCAAAAAACAACTGTATTTCAAGAAACATATCTGGACACATTCATCCCATGCTCCCGTGTTTACTGACATTGGGAAACTGGAGTATGGCTCAGGGGCTCCCCTTACGGTCACCATTTTGTAATCTTTCTCTTGAATTTTGAGATGGGAAAAATAGGAAAAACAAAACTGAAATCAGACGGGAAGGATTCATTTTTGAGACAGGGAAGTGAAAAAGAATGAAGAGCAAAAGTGTGGAAAACTTTGAAAAGTCGTTGTCATGGTTTTTGGTATCTAGGAGATTTTCACAGCTTGAAGGCAAAGTCGATTTCTGGTTTTTAGTGAAGTTTTGAACTCTAGATCTTCGATTCTTCAGATGTTCAAAACTCAAAAAATTGAAAATAGGAGAAAAAGTTTTATTTTCAAAAAATAACCCGTAAAAATTTCAAAAACAATCTCAATCAAATGGCTTCTGATGGGGACATGAATAATCATCGGGAAATTTGAATTGAAACGTGGCATAATTGACTCCGCCCCTTTCCAAAAACCATAACATCAACTCGTCACCAATCCAAGCTCCGCCCCCAAAAACGCCGCCAAATCGATATTCGGTGTATCCTGGGTCCGTCAAAATTGTAACACATCCAGATTGTAGATTTT</canonical>
            <polymorphic>TCAATTTCAGGTCTAATTTGCATCCCACAGTCGGTTATGTTCTCGGAAATAATTTTAACTTCATAGTAATTTTCTGATGTGATAATTTCAGCAGTATTAAATTTAGAATTCTTGAAACTAGATAACATCCCATCAAACATTCCAGATGGATCACTTGAACACTTGTTAGTAGTTTCGATCTTAATTATTTTGGTTTTTGATAGAAAAAAGATAAGAATCAGTAAGCAACTATCATCTTCAATCTAAGCTTAATAACCTTGAAAGAAACCTTCTCTAGAGTTTCTGACTCCTCTTGATCATTCCTTATCTTTCTAACATCTCCTGCTCCATACAGTACACACATCAATGAACTATTCGAATAAGCCAAAAAACAACTGTATTTCAAGAAACATATCTGGACACATTCATCCCATGCTCCCGTGTTTACTGACATTGGGAAACTGGAGTATGGCTCAGGGGCTCCCCTTACGGTCACCATTTTGTAATCTTTCTCTTGAATWTTGAGATGGGAAAAATAGGAAAAACAAAACTGAAATCAGACGGGAAGGATTCATTTTTGAGACAGGGAAGTGAAAAAGAATGAAGAGCAAAAGTGTGGAAAACTTTGAAAAGTCGTTGTCATGGTTTTTGGTATCTAGGAGATTTTCACAGCTTGAAGGCAAAGTCGATTTCTGGTTTTTAGTGAAGTTTTGAACTCTAGATCTTCGATTCTTCAGATGTTCAAAACTCAAAAAATTGAAAATAGGAGAAAAAGTTTTATTTTCAAAAAATAACCCGTAAAAATTTCAAAAACAATCTCAATCAAATGGCTTCTGATGGGGACATGAATAATCATCGGGAAATTTGAATTGAAACGTGGCATAATTGACTCCGCCCCTTTCCAAAAACCATAACATCAACTCGTCACCAATCCAAGCTCCGCCCCCAAAAACGCCGCCAAATCGATATTCGGTGTATCCTGGGTCCGTCAAAATTGTAACACATCCAGATTGTAGATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>390 285 160 99 59 7</canonical_bands>
                <polymorphic_bands>675 160 99 59 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>314 237 109 76 59 48 36 29 17 16 16 16 12 7 6 2</canonical_bands>
                <polymorphic_bands>551 109 76 59 48 36 29 17 16 16 16 12 7 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACATATCTGGACACATTCATC</pcr_primer_p1>
		<pcr_primer_p2>TAGATACCAAAAACCATGACAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAACATATCTGGACACATTCATCCCATGCTCCCGTGTTTACTGACATTGGGAAACTGGAGTATGGCTCAGGGGCTCCCCTTACGGTCACCATTTTGTAATCTTTCTCTTGAATTTTGAGATGGGAAAAATAGGAAAAACAAAACTGAAATCAGACGGGAAGGATTCATTTTTGAGACAGGGAAGTGAAAAAGAATGAAGAGCAAAAGTGTGGAAAACTTTGAAAAGTCGTTGTCATGGTTTTTGGTATCTA</canonical_amplicon>
		<polymorphic_amplicon>AAACATATCTGGACACATTCATCCCATGCTCCCGTGTTTACTGACATTGGGAAACTGGAGTATGGCTCAGGGGCTCCCCTTACGGTCACCATTTTGTAATCTTTCTCTTGAATWTTGAGATGGGAAAAATAGGAAAAACAAAACTGAAATCAGACGGGAAGGATTCATTTTTGAGACAGGGAAGTGAAAAAGAATGAAGAGCAAAAGTGTGGAAAACTTTGAAAAGTCGTTGTCATGGTTTTTGGTATCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15890</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>323749</contig_pos>
        <strand>+</strand>
        <context>CTCTTGAATW[G/T]WGAGATGGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCTCAGGGGCTCCCCTTACGGTCACCATTTTGTAATCTTTCTCTTGAATT</left_flank>
        <right_flank>TGAGATGGGAAAAATAGGAAAAACAAAACTGAAATCAGACGGGAAGGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATTTCAGGTCTAATTTGCATCCCACAGTCGGTTATGTTCTCGGAAATAATTTTAACTTCATAGTAATTTTCTGATGTGATAATTTCAGCAGTATTAAATTTAGAATTCTTGAAACTAGATAACATCCCATCAAACATTCCAGATGGATCACTTGAACACTTGTTAGTAGTTTCGATCTTAATTATTTTGGTTTTTGATAGAAAAAAGATAAGAATCAGTAAGCAACTATCATCTTCAATCTAAGCTTAATAACCTTGAAAGAAACCTTCTCTAGAGTTTCTGACTCCTCTTGATCATTCCTTATCTTTCTAACATCTCCTGCTCCATACAGTACACACATCAATGAACTATTCGAATAAGCCAAAAAACAACTGTATTTCAAGAAACATATCTGGACACATTCATCCCATGCTCCCGTGTTTACTGACATTGGGAAACTGGAGTATGGCTCAGGGGCTCCCCTTACGGTCACCATTTTGTAATCTTTCTCTTGAATTTTGAGATGGGAAAAATAGGAAAAACAAAACTGAAATCAGACGGGAAGGATTCATTTTTGAGACAGGGAAGTGAAAAAGAATGAAGAGCAAAAGTGTGGAAAACTTTGAAAAGTCGTTGTCATGGTTTTTGGTATCTAGGAGATTTTCACAGCTTGAAGGCAAAGTCGATTTCTGGTTTTTAGTGAAGTTTTGAACTCTAGATCTTCGATTCTTCAGATGTTCAAAACTCAAAAAATTGAAAATAGGAGAAAAAGTTTTATTTTCAAAAAATAACCCGTAAAAATTTCAAAAACAATCTCAATCAAATGGCTTCTGATGGGGACATGAATAATCATCGGGAAATTTGAATTGAAACGTGGCATAATTGACTCCGCCCCTTTCCAAAAACCATAACATCAACTCGTCACCAATCCAAGCTCCGCCCCCAAAAACGCCGCCAAATCGATATTCGGTGTATCCTGGGTCCGTCAAAATTGTAACACATCCAGATTGTAGATTTTT</canonical>
            <polymorphic>CAATTTCAGGTCTAATTTGCATCCCACAGTCGGTTATGTTCTCGGAAATAATTTTAACTTCATAGTAATTTTCTGATGTGATAATTTCAGCAGTATTAAATTTAGAATTCTTGAAACTAGATAACATCCCATCAAACATTCCAGATGGATCACTTGAACACTTGTTAGTAGTTTCGATCTTAATTATTTTGGTTTTTGATAGAAAAAAGATAAGAATCAGTAAGCAACTATCATCTTCAATCTAAGCTTAATAACCTTGAAAGAAACCTTCTCTAGAGTTTCTGACTCCTCTTGATCATTCCTTATCTTTCTAACATCTCCTGCTCCATACAGTACACACATCAATGAACTATTCGAATAAGCCAAAAAACAACTGTATTTCAAGAAACATATCTGGACACATTCATCCCATGCTCCCGTGTTTACTGACATTGGGAAACTGGAGTATGGCTCAGGGGCTCCCCTTACGGTCACCATTTTGTAATCTTTCTCTTGAATTKTGAGATGGGAAAAATAGGAAAAACAAAACTGAAATCAGACGGGAAGGATTCATTTTTGAGACAGGGAAGTGAAAAAGAATGAAGAGCAAAAGTGTGGAAAACTTTGAAAAGTCGTTGTCATGGTTTTTGGTATCTAGGAGATTTTCACAGCTTGAAGGCAAAGTCGATTTCTGGTTTTTAGTGAAGTTTTGAACTCTAGATCTTCGATTCTTCAGATGTTCAAAACTCAAAAAATTGAAAATAGGAGAAAAAGTTTTATTTTCAAAAAATAACCCGTAAAAATTTCAAAAACAATCTCAATCAAATGGCTTCTGATGGGGACATGAATAATCATCGGGAAATTTGAATTGAAACGTGGCATAATTGACTCCGCCCCTTTCCAAAAACCATAACATCAACTCGTCACCAATCCAAGCTCCGCCCCCAAAAACGCCGCCAAATCGATATTCGGTGTATCCTGGGTCCGTCAAAATTGTAACACATCCAGATTGTAGATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>390 285 161 98 59 7</canonical_bands>
                <polymorphic_bands>675 161 98 59 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACATATCTGGACACATTCATC</pcr_primer_p1>
		<pcr_primer_p2>TAGATACCAAAAACCATGACAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAACATATCTGGACACATTCATCCCATGCTCCCGTGTTTACTGACATTGGGAAACTGGAGTATGGCTCAGGGGCTCCCCTTACGGTCACCATTTTGTAATCTTTCTCTTGAATTTTGAGATGGGAAAAATAGGAAAAACAAAACTGAAATCAGACGGGAAGGATTCATTTTTGAGACAGGGAAGTGAAAAAGAATGAAGAGCAAAAGTGTGGAAAACTTTGAAAAGTCGTTGTCATGGTTTTTGGTATCTA</canonical_amplicon>
		<polymorphic_amplicon>AAACATATCTGGACACATTCATCCCATGCTCCCGTGTTTACTGACATTGGGAAACTGGAGTATGGCTCAGGGGCTCCCCTTACGGTCACCATTTTGTAATCTTTCTCTTGAATTKTGAGATGGGAAAAATAGGAAAAACAAAACTGAAATCAGACGGGAAGGATTCATTTTTGAGACAGGGAAGTGAAAAAGAATGAAGAGCAAAAGTGTGGAAAACTTTGAAAAGTCGTTGTCATGGTTTTTGGTATCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15891</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>323750</contig_pos>
        <strand>+</strand>
        <context>TCTTGAATWK[A/T]GAGATGGGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCAGGGGCTCCCCTTACGGTCACCATTTTGTAATCTTTCTCTTGAATTT</left_flank>
        <right_flank>GAGATGGGAAAAATAGGAAAAACAAAACTGAAATCAGACGGGAAGGATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTCAGGTCTAATTTGCATCCCACAGTCGGTTATGTTCTCGGAAATAATTTTAACTTCATAGTAATTTTCTGATGTGATAATTTCAGCAGTATTAAATTTAGAATTCTTGAAACTAGATAACATCCCATCAAACATTCCAGATGGATCACTTGAACACTTGTTAGTAGTTTCGATCTTAATTATTTTGGTTTTTGATAGAAAAAAGATAAGAATCAGTAAGCAACTATCATCTTCAATCTAAGCTTAATAACCTTGAAAGAAACCTTCTCTAGAGTTTCTGACTCCTCTTGATCATTCCTTATCTTTCTAACATCTCCTGCTCCATACAGTACACACATCAATGAACTATTCGAATAAGCCAAAAAACAACTGTATTTCAAGAAACATATCTGGACACATTCATCCCATGCTCCCGTGTTTACTGACATTGGGAAACTGGAGTATGGCTCAGGGGCTCCCCTTACGGTCACCATTTTGTAATCTTTCTCTTGAATTTTGAGATGGGAAAAATAGGAAAAACAAAACTGAAATCAGACGGGAAGGATTCATTTTTGAGACAGGGAAGTGAAAAAGAATGAAGAGCAAAAGTGTGGAAAACTTTGAAAAGTCGTTGTCATGGTTTTTGGTATCTAGGAGATTTTCACAGCTTGAAGGCAAAGTCGATTTCTGGTTTTTAGTGAAGTTTTGAACTCTAGATCTTCGATTCTTCAGATGTTCAAAACTCAAAAAATTGAAAATAGGAGAAAAAGTTTTATTTTCAAAAAATAACCCGTAAAAATTTCAAAAACAATCTCAATCAAATGGCTTCTGATGGGGACATGAATAATCATCGGGAAATTTGAATTGAAACGTGGCATAATTGACTCCGCCCCTTTCCAAAAACCATAACATCAACTCGTCACCAATCCAAGCTCCGCCCCCAAAAACGCCGCCAAATCGATATTCGGTGTATCCTGGGTCCGTCAAAATTGTAACACATCCAGATTGTAGATTTTTT</canonical>
            <polymorphic>AATTTCAGGTCTAATTTGCATCCCACAGTCGGTTATGTTCTCGGAAATAATTTTAACTTCATAGTAATTTTCTGATGTGATAATTTCAGCAGTATTAAATTTAGAATTCTTGAAACTAGATAACATCCCATCAAACATTCCAGATGGATCACTTGAACACTTGTTAGTAGTTTCGATCTTAATTATTTTGGTTTTTGATAGAAAAAAGATAAGAATCAGTAAGCAACTATCATCTTCAATCTAAGCTTAATAACCTTGAAAGAAACCTTCTCTAGAGTTTCTGACTCCTCTTGATCATTCCTTATCTTTCTAACATCTCCTGCTCCATACAGTACACACATCAATGAACTATTCGAATAAGCCAAAAAACAACTGTATTTCAAGAAACATATCTGGACACATTCATCCCATGCTCCCGTGTTTACTGACATTGGGAAACTGGAGTATGGCTCAGGGGCTCCCCTTACGGTCACCATTTTGTAATCTTTCTCTTGAATTTWGAGATGGGAAAAATAGGAAAAACAAAACTGAAATCAGACGGGAAGGATTCATTTTTGAGACAGGGAAGTGAAAAAGAATGAAGAGCAAAAGTGTGGAAAACTTTGAAAAGTCGTTGTCATGGTTTTTGGTATCTAGGAGATTTTCACAGCTTGAAGGCAAAGTCGATTTCTGGTTTTTAGTGAAGTTTTGAACTCTAGATCTTCGATTCTTCAGATGTTCAAAACTCAAAAAATTGAAAATAGGAGAAAAAGTTTTATTTTCAAAAAATAACCCGTAAAAATTTCAAAAACAATCTCAATCAAATGGCTTCTGATGGGGACATGAATAATCATCGGGAAATTTGAATTGAAACGTGGCATAATTGACTCCGCCCCTTTCCAAAAACCATAACATCAACTCGTCACCAATCCAAGCTCCGCCCCCAAAAACGCCGCCAAATCGATATTCGGTGTATCCTGGGTCCGTCAAAATTGTAACACATCCAGATTGTAGATTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACATATCTGGACACATTCATC</pcr_primer_p1>
		<pcr_primer_p2>TAGATACCAAAAACCATGACAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAACATATCTGGACACATTCATCCCATGCTCCCGTGTTTACTGACATTGGGAAACTGGAGTATGGCTCAGGGGCTCCCCTTACGGTCACCATTTTGTAATCTTTCTCTTGAATTTTGAGATGGGAAAAATAGGAAAAACAAAACTGAAATCAGACGGGAAGGATTCATTTTTGAGACAGGGAAGTGAAAAAGAATGAAGAGCAAAAGTGTGGAAAACTTTGAAAAGTCGTTGTCATGGTTTTTGGTATCTA</canonical_amplicon>
		<polymorphic_amplicon>AAACATATCTGGACACATTCATCCCATGCTCCCGTGTTTACTGACATTGGGAAACTGGAGTATGGCTCAGGGGCTCCCCTTACGGTCACCATTTTGTAATCTTTCTCTTGAATTTWGAGATGGGAAAAATAGGAAAAACAAAACTGAAATCAGACGGGAAGGATTCATTTTTGAGACAGGGAAGTGAAAAAGAATGAAGAGCAAAAGTGTGGAAAACTTTGAAAAGTCGTTGTCATGGTTTTTGGTATCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15892</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>324148</contig_pos>
        <strand>+</strand>
        <context>ATAACATCAA[A/C]TCGTCACCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGAAACGTGGCATAATTGACTCCGCCCCTTTCCAAAAACCATAACATCAA</left_flank>
        <right_flank>TCGTCACCAATCCAAGCTCCGCCCCCAAAAACGCCGCCAAATCGATATTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATTCATCCCATGCTCCCGTGTTTACTGACATTGGGAAACTGGAGTATGGCTCAGGGGCTCCCCTTACGGTCACCATTTTGTAATCTTTCTCTTGAATTTTGAGATGGGAAAAATAGGAAAAACAAAACTGAAATCAGACGGGAAGGATTCATTTTTGAGACAGGGAAGTGAAAAAGAATGAAGAGCAAAAGTGTGGAAAACTTTGAAAAGTCGTTGTCATGGTTTTTGGTATCTAGGAGATTTTCACAGCTTGAAGGCAAAGTCGATTTCTGGTTTTTAGTGAAGTTTTGAACTCTAGATCTTCGATTCTTCAGATGTTCAAAACTCAAAAAATTGAAAATAGGAGAAAAAGTTTTATTTTCAAAAAATAACCCGTAAAAATTTCAAAAACAATCTCAATCAAATGGCTTCTGATGGGGACATGAATAATCATCGGGAAATTTGAATTGAAACGTGGCATAATTGACTCCGCCCCTTTCCAAAAACCATAACATCAACTCGTCACCAATCCAAGCTCCGCCCCCAAAAACGCCGCCAAATCGATATTCGGTGTATCCTGGGTCCGTCAAAATTGTAACACATCCAGATTGTAGATTTTTTCGTGTAACGTAAAAATGGGTAGGGTAGATCACAGCGATCAGTTGATGTTCAATATCGTCGTCGATACGAGTGGAAATTCTGAAAATAGACAGAAATGCATATAAAATTCGTGCTCAGCTCAAAATTTAGGTCTAGACACTTTTTAAAACGAAGTTCTAGCGATACGTTTGAAGGTTAGAGTTAGCCTGCTAATGTTGAAGCTGTAGTTTGTAGTCTAGCAGGCCCAAGTTAAAGGAGAATATAAGTGAAGAGAGTGGGTCTGCTAGCCTACAAACTACAACTCGAACACTAGCAGACCCACGCGTTCACTAGAAAAGTTGCCCTGCTAGTGATTCCTTTGTAGTTTGTAGTCTAGCAGGCCCAACTTCAAGGTAAAAACCTTCAAATTCGTGCTAGAC</canonical>
            <polymorphic>ACATTCATCCCATGCTCCCGTGTTTACTGACATTGGGAAACTGGAGTATGGCTCAGGGGCTCCCCTTACGGTCACCATTTTGTAATCTTTCTCTTGAATTTTGAGATGGGAAAAATAGGAAAAACAAAACTGAAATCAGACGGGAAGGATTCATTTTTGAGACAGGGAAGTGAAAAAGAATGAAGAGCAAAAGTGTGGAAAACTTTGAAAAGTCGTTGTCATGGTTTTTGGTATCTAGGAGATTTTCACAGCTTGAAGGCAAAGTCGATTTCTGGTTTTTAGTGAAGTTTTGAACTCTAGATCTTCGATTCTTCAGATGTTCAAAACTCAAAAAATTGAAAATAGGAGAAAAAGTTTTATTTTCAAAAAATAACCCGTAAAAATTTCAAAAACAATCTCAATCAAATGGCTTCTGATGGGGACATGAATAATCATCGGGAAATTTGAATTGAAACGTGGCATAATTGACTCCGCCCCTTTCCAAAAACCATAACATCAAMTCGTCACCAATCCAAGCTCCGCCCCCAAAAACGCCGCCAAATCGATATTCGGTGTATCCTGGGTCCGTCAAAATTGTAACACATCCAGATTGTAGATTTTTTCGTGTAACGTAAAAATGGGTAGGGTAGATCACAGCGATCAGTTGATGTTCAATATCGTCGTCGATACGAGTGGAAATTCTGAAAATAGACAGAAATGCATATAAAATTCGTGCTCAGCTCAAAATTTAGGTCTAGACACTTTTTAAAACGAAGTTCTAGCGATACGTTTGAAGGTTAGAGTTAGCCTGCTAATGTTGAAGCTGTAGTTTGTAGTCTAGCAGGCCCAAGTTAAAGGAGAATATAAGTGAAGAGAGTGGGTCTGCTAGCCTACAAACTACAACTCGAACACTAGCAGACCCACGCGTTCACTAGAAAAGTTGCCCTGCTAGTGATTCCTTTGTAGTTTGTAGTCTAGCAGGCCCAACTTCAAGGTAAAAACCTTCAAATTCGTGCTAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAAAAACAATCTCAATCAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGATCTACCCTACCCATTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCAAAAACAATCTCAATCAAATGGCTTCTGATGGGGACATGAATAATCATCGGGAAATTTGAATTGAAACGTGGCATAATTGACTCCGCCCCTTTCCAAAAACCATAACATCAACTCGTCACCAATCCAAGCTCCGCCCCCAAAAACGCCGCCAAATCGATATTCGGTGTATCCTGGGTCCGTCAAAATTGTAACACATCCAGATTGTAGATTTTTTCGTGTAACGTAAAAATGGGTAGGGTAGATCA</canonical_amplicon>
		<polymorphic_amplicon>TTCAAAAACAATCTCAATCAAATGGCTTCTGATGGGGACATGAATAATCATCGGGAAATTTGAATTGAAACGTGGCATAATTGACTCCGCCCCTTTCCAAAAACCATAACATCAAMTCGTCACCAATCCAAGCTCCGCCCCCAAAAACGCCGCCAAATCGATATTCGGTGTATCCTGGGTCCGTCAAAATTGTAACACATCCAGATTGTAGATTTTTTCGTGTAACGTAAAAATGGGTAGGGTAGATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15893</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>330397</contig_pos>
        <strand>+</strand>
        <context>TCCATGGTTG[C/T]ACTGAAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGATGTTTCAGGGAGCACTGTAGAAGTTTGCGGAGTCTTTTCCATGGTTG</left_flank>
        <right_flank>ACTGAAAAAAACTAAAACTTCTGACACCACCACCAGAATCCACGTGTCAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTGTAAAAATTCTAGATTTCCAAAAAAACAAAATTTTCGAAATCTTCAAAAAAAATTATTTTTTTTAGATTTTTGAAAAAAATCTGTTCCACGTTTCCAAGGATTTAAAAAATCGATTTTTTGTAGTTTGTAGTCTCTCCAGCACAAACTACACTTTTATTATTCCACTTCACCCAGCCCAATTAAAAACTAAAAATCCCAAAAAATGAGCAAAAATAAAGTTCCAATAATTTTTCCCATCCGATTCTCCAATTGGCTGATCATCGAAACAAATATGTTCTCCGCCACATTCAACGTCTTCTGGTTTAGAAGACGTCACGTCTTCTATTGGAGCCTTCTTCTGTAAGCCAAGTGGCATTTTTGTGGCAGTCTTTGGGACGGTTACTGTGGTTTTGATTATTCTTATTGTTGTTGTAATAGTTATTGGGAGTACTGTAGTTGGCACTGTCGATGTTTCAGGGAGCACTGTAGAAGTTTGCGGAGTCTTTTCCATGGTTGCACTGAAAAAAACTAAAACTTCTGACACCACCACCAGAATCCACGTGTCACATTACCCCTACCTCCAAATTTTCAGACCGCTAACTCAAAGTGTAGTAAAGTCTGGTGTTTCGTCCGCAAACACGGAATTACGGACTAAACACCAGAATTCACGACACTTTGAGCTAGCGGTTTGAAAATTTCATAGTTGCAAAATCTCGGGCCGGCCCGCGGGTCGGCCCGTCGAGAAATTCGGCGGGCCGGGCCGGGGTACATACAGACGCTGTTTTTTTTTTGAATTTTTATCGAAATTCTTGGAATTTTTTCAAAAAATTAAACAAAAACGTCCTATTTTTCGACTACTTTCTACTTTGTTAATTTTGTTAAATAATGTAACATTTTTTTTCTTTTTTAATTCAAAAAAATCACCCAAATTTTCATTGGAAAATTTCAACAGTAGGCGGGCCGGCCCGGGGTCGGGCCGGGCCGAGAAAATTCGTCTACCGGCCCGGCCCGGCATGG</canonical>
            <polymorphic>CGTGTAAAAATTCTAGATTTCCAAAAAAACAAAATTTTCGAAATCTTCAAAAAAAATTATTTTTTTTAGATTTTTGAAAAAAATCTGTTCCACGTTTCCAAGGATTTAAAAAATCGATTTTTTGTAGTTTGTAGTCTCTCCAGCACAAACTACACTTTTATTATTCCACTTCACCCAGCCCAATTAAAAACTAAAAATCCCAAAAAATGAGCAAAAATAAAGTTCCAATAATTTTTCCCATCCGATTCTCCAATTGGCTGATCATCGAAACAAATATGTTCTCCGCCACATTCAACGTCTTCTGGTTTAGAAGACGTCACGTCTTCTATTGGAGCCTTCTTCTGTAAGCCAAGTGGCATTTTTGTGGCAGTCTTTGGGACGGTTACTGTGGTTTTGATTATTCTTATTGTTGTTGTAATAGTTATTGGGAGTACTGTAGTTGGCACTGTCGATGTTTCAGGGAGCACTGTAGAAGTTTGCGGAGTCTTTTCCATGGTTGYACTGAAAAAAACTAAAACTTCTGACACCACCACCAGAATCCACGTGTCACATTACCCCTACCTCCAAATTTTCAGACCGCTAACTCAAAGTGTAGTAAAGTCTGGTGTTTCGTCCGCAAACACGGAATTACGGACTAAACACCAGAATTCACGACACTTTGAGCTAGCGGTTTGAAAATTTCATAGTTGCAAAATCTCGGGCCGGCCCGCGGGTCGGCCCGTCGAGAAATTCGGCGGGCCGGGCCGGGGTACATACAGACGCTGTTTTTTTTTTGAATTTTTATCGAAATTCTTGGAATTTTTTCAAAAAATTAAACAAAAACGTCCTATTTTTCGACTACTTTCTACTTTGTTAATTTTGTTAAATAATGTAACATTTTTTTTCTTTTTTAATTCAAAAAAATCACCCAAATTTTCATTGGAAAATTTCAACAGTAGGCGGGCCGGCCCGGGGTCGGGCCGGGCCGAGAAAATTCGTCTACCGGCCCGGCCCGGCATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>499 311 190</canonical_bands>
                <polymorphic_bands>689 311</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>250 115 94 88 55 53 43 36 35 31 25 24 21 19 15 15 14 11 10 10 9 5 5 4 4 3 3 3</canonical_bands>
                <polymorphic_bands>250 115 94 88 60 55 53 43 36 31 24 21 19 15 15 14 11 10 10 9 5 5 4 4 3 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGTTGGCACTGTCGATGT</pcr_primer_p1>
		<pcr_primer_p2>CCTACCTCTAAATTTTCCATAGTT</pcr_primer_p2>
		<pcr_amplicon_size>597</pcr_amplicon_size>
		<canonical_amplicon>GTAGTTGGCACTGTCGATGTTTCAGGGAGCACTGTAGAAGTTTGCGGAGTCTTTTCCATGGTTGCACTGAAAAAAACTAAAACTTCTG</canonical_amplicon>
		<polymorphic_amplicon>GTAGTTGGCACTGTCGATGTTTCAGGGAGCACTGTAGAAGTTTGCGGAGTCTTTTCCATGGTTGYACTGAAAAAAACTAAAACTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15894</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>330089</contig_pos>
        <strand></strand>
        <context>AATTYAAAAC[T/C]AAAAATCCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGCACAAACTACACTTTTATTATTCCACTTCACCCAGCCCAATTAAAAAC</left_flank>
        <right_flank>AAAAATCCCAAAAAATGAGCAAAAATAAAGTTCCAATAATTTTTCCCATC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAACTTTTTTCCTATTTTTTGCTTCTTCAGATTTCAGATTCCTAAAAACAAAATCCTAAAATTTCACAAAAAAAATTTCATTTGATTTTTTTTCAAAAAATTTCGAAAAAAAACATTCTAAGGTTTTTTAACTTGCATTTTCCGAAAGTCAATCCAAAACTGCCAATTATAAAAATTCCACGTGGAAAAATTCCAGATTTCCAAATAAAATCGAAAAATTGGAATAATAAAAATAATTAACTTTTAAAAATTTTTTCAGCTCTTAAATTTTTTACAAAACCAAAATTGCTCATTTTAGAAAATCCACGTGTAAAAATTCTAGATTTCCAAAAAAACAAAATTTTCGAAATCTTCAAAAAAAATTATTTTTTTTAGATTTTTGAAAAAAATCTGTTCCACGTTTCCAAGGATTTAAAAAATCGATTTTTTGTAGTTTGTAGTCTCTCCAGCACAAACTACACTTTTATTATTCCACTTCACCCAGCCCAATTAAAAACTAAAAATCCCAAAAAATGAGCAAAAATAAAGTTCCAATAATTTTTCCCATCCGATTCTCCAATTGGCTGATCATCGAAACAAATATGTTCTCCGCCACATTCAACGTCTTCTGGTTTAGAAGACGTCACGTCTTCTATTGGAGCCTTCTTCTGTAAGCCAAGTGGCATTTTTGTGGCAGTCTTTGGGACGGTTACTGTGGTTTTGATTATTCTTATTGTTGTTGTAATAGTTATTGGGAGTACTGTAGTTGGCACTGTCGATGTTTCAGGGAGCACTGTAGAAGTTTGCGGAGTCTTTTCCATGGTTGCACTGAAAAAAACTAAAACTTCTGACACCACCACCAGAATCCACGTGTCACATTACCCCTACCTCCAAATTTTCAGACCGCTAACTCAAAGTGTAGTAAAGTCTGGTGTTTCGTCCGCAAACACGGAATTACGGACTAAACACCAGAATTCACGACACTTTGAGCTAGCGGTTTGAAAATTTCATAGTTGCAA</canonical>
            <polymorphic>ATAAACTTTTTTCCTATTTTTTGCTTCTTCAGATTTCAGATTCCTAAAAACAAAATCCTAAAATTTCACAAAAAAAATTTCATTTGATTTTTTTTCAAAAAATTTCGAAAAAAAACATTCTAAGGTTTTTTAACTTGCATTTTCCGAAAGTCAATCCAAAACTGCCAATTATAAAAATTCCACGTGGAAAAATTCCAGATTTCCAAATAAAATCGAAAAATTGGAATAATAAAAATAATTAACTTTTAAAAATTTTTTCAGCTCTTAAATTTTTTACAAAACCAAAATTGCTCATTTTAGAAAATCCACGTGTAAAAATTCTAGATTTCCAAAAAAACAAAATTTTCGAAATCTTCAAAAAAAATTATTTTTTTTAGATTTTTGAAAAAAATCTGTTCCACGTTTCCAAGGATTTAAAAAATCGATTTTTTGTAGTTTGTAGTCTCTCCAGCACAAACTACACTTTTATTATTCCACTTCACCCAGCCCAATTAAAAACYAAAAATCCCAAAAAATGAGCAAAAATAAAGTTCCAATAATTTTTCCCATCCGATTCTCCAATTGGCTGATCATCGAAACAAATATGTTCTCCGCCACATTCAACGTCTTCTGGTTTAGAAGACGTCACGTCTTCTATTGGAGCCTTCTTCTGTAAGCCAAGTGGCATTTTTGTGGCAGTCTTTGGGACGGTTACTGTGGTTTTGATTATTCTTATTGTTGTTGTAATAGTTATTGGGAGTACTGTAGTTGGCACTGTCGATGTTTCAGGGAGCACTGTAGAAGTTTGCGGAGTCTTTTCCATGGTTGCACTGAAAAAAACTAAAACTTCTGACACCACCACCAGAATCCACGTGTCACATTACCCCTACCTCCAAATTTTCAGACCGCTAACTCAAAGTGTAGTAAAGTCTGGTGTTTCGTCCGCAAACACGGAATTACGGACTAAACACCAGAATTCACGACACTTTGAGCTAGCGGTTTGAAAATTTCATAGTTGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGTTTGTAGTCTCTCCAGCAC</pcr_primer_p1>
		<pcr_primer_p2>CTTACAGAAGAAGGCTCCAATA</pcr_primer_p2>
		<pcr_amplicon_size>225</pcr_amplicon_size>
		<canonical_amplicon>GTAGTTTGTAGTCTCTCCAGCACAAACTACACTTTTATTATTCCACTTCACCCAGCCCAATTAAAAACTAAAAATCCCAAAAAATGAGCAAAAATAAAGTTCCAATAATTTTTCCCATCCGATTCTCCAATTGGCTGATCATCGAAACAAATATGTTCTCCGCCACATTCAACGTCTTCTGGTTTAGAAGACGTCACGTCTTCTATTGGAGCCTTCTTCTGTAAG</canonical_amplicon>
		<polymorphic_amplicon>GTAGTTTGTAGTCTCTCCAGCACAAACTACACTTTTATTATTCCACTTCACCCAGCCCAATTAAAAACYAAAAATCCCAAAAAATGAGCAAAAATAAAGTTCCAATAATTTTTCCCATCCGATTCTCCAATTGGCTGATCATCGAAACAAATATGTTCTCCGCCACATTCAACGTCTTCTGGTTTAGAAGACGTCACGTCTTCTATTGGAGCCTTCTTCTGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15895</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>354293</contig_pos>
        <strand>+</strand>
        <context>GCGGTTGAAC[A/G]ATGTGAAACT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAATTCTAGTTTTTCGGAGAGCCTGTTAAATACAGTCTAGCGGTTGAAC</left_flank>
        <right_flank>ATGTGAAACTATTGGTGGTGATGGTCTAATGACTCTACCGAATCAGGATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTATGGGTAGTATGGATGGTACCCTCGATATGGAATTTCCACAGAACTGTTCTATGTATAAATTGAATGAACTCGAATCGTTTGAACGCATTGAAGATCTTGGTCCTTATCCTGTGTCTGGTGATTATTTCTACATAACGTTGAAATTCTCAAGCTCAACATGCCCTGGAACTTACACTTCTCTGTTTAGTGGTAGTCAGGAATCTGTAAGTTATGGAGAACCACCCAAATTGCCAATTTTCCATAGTAATGTATGTTTTCAGAACTTTGGGTATTTTACAAGTTTCTCGTCTTACGCATTAACAACGACTGGCTTACACACATCTATTGAATTTTGGAGTACCTTAACAAAACAACATGTGAAGGCGATTACGTTTTCACTCTTGATAATGTTGGTGGATGTTATGGGGTGAGCTTTTGATCACAAGCTAAAAGTAAACATCAAACTTGAATTCTAGTTTTTCGGAGAGCCTGTTAAATACAGTCTAGCGGTTGAACGATGTGAAACTATTGGTGGTGATGGTCTAATGACTCTACCGAATCAGGATGCACTTCAAAAAATGATAACGGCTAAAGAAGCCGTTTTCAAAGTCAGTGGCTTTTACTTTGTGGGATATACCAGACCAGATGAAAACAGTGTAAGTTATTATGGCAAGAAGCAGAAATTATTGATTCAATATCTCTGAATCAGGACTGGGAATGGACTCTTCCACATCTGGAATTCGGTGATAATCCTGTTTCAAAGATGTCGGGAAACATTTTAGATGGTCCAGGGTAAGATAATGTCCTATGGCTTGATCCAATTAAAAACGAATTCCAGTTTGTACTCGGTGATCGATCTTCGGTCAAATGTCAATGCTGTTCTTAGTGTTCGAACGTAAATATCAACCTATGTTCTTAAAGAAAATTTCAATTATTTTCAGTGCTGAAGACGTCGCAGATGGATACTTTTGTCATTTCCCCGGTAGAAAAGATTGAAAATTATTTTTCTGTTTTCAG</canonical>
            <polymorphic>AGTATGGGTAGTATGGATGGTACCCTCGATATGGAATTTCCACAGAACTGTTCTATGTATAAATTGAATGAACTCGAATCGTTTGAACGCATTGAAGATCTTGGTCCTTATCCTGTGTCTGGTGATTATTTCTACATAACGTTGAAATTCTCAAGCTCAACATGCCCTGGAACTTACACTTCTCTGTTTAGTGGTAGTCAGGAATCTGTAAGTTATGGAGAACCACCCAAATTGCCAATTTTCCATAGTAATGTATGTTTTCAGAACTTTGGGTATTTTACAAGTTTCTCGTCTTACGCATTAACAACGACTGGCTTACACACATCTATTGAATTTTGGAGTACCTTAACAAAACAACATGTGAAGGCGATTACGTTTTCACTCTTGATAATGTTGGTGGATGTTATGGGGTGAGCTTTTGATCACAAGCTAAAAGTAAACATCAAACTTGAATTCTAGTTTTTCGGAGAGCCTGTTAAATACAGTCTAGCGGTTGAACRATGTGAAACTATTGGTGGTGATGGTCTAATGACTCTACCGAATCAGGATGCACTTCAAAAAATGATAACGGCTAAAGAAGCCGTTTTCAAAGTCAGTGGCTTTTACTTTGTGGGATATACCAGACCAGATGAAAACAGTGTAAGTTATTATGGCAAGAAGCAGAAATTATTGATTCAATATCTCTGAATCAGGACTGGGAATGGACTCTTCCACATCTGGAATTCGGTGATAATCCTGTTTCAAAGATGTCGGGAAACATTTTAGATGGTCCAGGGTAAGATAATGTCCTATGGCTTGATCCAATTAAAAACGAATTCCAGTTTGTACTCGGTGATCGATCTTCGGTCAAATGTCAATGCTGTTCTTAGTGTTCGAACGTAAATATCAACCTATGTTCTTAAAGAAAATTTCAATTATTTTCAGTGCTGAAGACGTCGCAGATGGATACTTTTGTCATTTCCCCGGTAGAAAAGATTGAAAATTATTTTTCTGTTTTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATTTTGGAGTACCTTAACAA</pcr_primer_p1>
		<pcr_primer_p2>TTCTTTAGCCGTTATCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAATTTTGGAGTACCTTAACAAAACAACATGTGAAGGCGATTACGTTTTCACTCTTGATAATGTTGGTGGATGTTATGGGGTGAGCTTTTGATCACAAGCTAAAAGTAAACATCAAACTTGAATTCTAGTTTTTCGGAGAGCCTGTTAAATACAGTCTAGCGGTTGAACGATGTGAAACTATTGGTGGTGATGGTCTAATGACTCTACCGAATCAGGATGCACTTCAAAAAATGATAACGGCTAAAGAA</canonical_amplicon>
		<polymorphic_amplicon>TGAATTTTGGAGTACCTTAACAAAACAACATGTGAAGGCGATTACGTTTTCACTCTTGATAATGTTGGTGGATGTTATGGGGTGAGCTTTTGATCACAAGCTAAAAGTAAACATCAAACTTGAATTCTAGTTTTTCGGAGAGCCTGTTAAATACAGTCTAGCGGTTGAACRATGTGAAACTATTGGTGGTGATGGTCTAATGACTCTACCGAATCAGGATGCACTTCAAAAAATGATAACGGCTAAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15897</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>383593</contig_pos>
        <strand></strand>
        <context>TAAAATTCAG[A/G]TCGTTTGCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTACAGTAATCTTAAAAATCCACGCGGCATTTTTTTTTCTAAAATTCAG</left_flank>
        <right_flank>TCGTTTGCGAAGGAGCCGGAGCAATTGGCATCGGAGCAATTCTATCGGGA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCAAAAATGTCATTGTTAAAATTCTATCAAACATCCCTTCTCACATTATTGGAGAAAAACCGCATCAAACGTACTGTTTTGGGCTTTGAAAATGCGATCTTTGGAATTGGCGTATTTGAAAACCACAGTCTATCATTTTTCAGATTCTGAAAATCTTGTTTTAGAGCTGAAATATGGGAGGAATACAATTTGGGTCTGCTAACGTTATTTCTGTAGTTTGTAGTCTAGCAGACCAACACAAATAGCAAGGGAATTTGGTCTGCTAGACTACAAACTACANNNNNNNNNNTACAATATAAACATAGAAAAGTTTGGTCTGCTAGACTACAAACTACAAATCAAACATTAGCAGACCAATTTTAGGAAAAATCGACCGAGTGATCAGCGTGCCTGAAAACGACATTGCCGTGGCGATTCTTCGCCTAATTGAGAATGAAAAAGTAGGTTTCTACAGTAATCTTAAAAATCCACGCGGCATTTTTTTTTCTAAAATTCAGATCGTTTGCGAAGGAGCCGGAGCAATTGGCATCGGAGCAATTCTATCGGGAAAATTGGATTATCTAAAAGGCAAAACCGTCGTATCGATTTTGTCGGGTGGCAATATTGATAGCACGTCGTTGGGAAGGTGTATTGAAAGAGGTATTTAGGGAGACTACAAACTACGCAATTATTTAGCAGACCCAACTTTTTTCTAGGATTGGCCTATGATCATCGTGTGATTCGTCTATCGGTAATAATTCCGGACAAGCCAGGTGGCTTATCGAAATTGACTGGTTTGGTGGGAGATTTACAAGGGAATGTGAGGGATTTGTACTTGGTAATTGGGACTTAATTGGGCGGCTAATTACTTAATTATTTTAGGAACGAGCATTTATGAGAAACGACATGTCTAGTCAACGAGTCAAAATGGTCATCGAGGTGCGGGGAAAAGAGCATGAGGAGCAATTAAAAGAGAAACTGGAAAAGGAGTACGATCCATCGAATTGCCAATTCAAGAA</canonical>
            <polymorphic>ATCCAAAAATGTCATTGTTAAAATTCTATCAAACATCCCTTCTCACATTATTGGAGAAAAACCGCATCAAACGTACTGTTTTGGGCTTTGAAAATGCGATCTTTGGAATTGGCGTATTTGAAAACCACAGTCTATCATTTTTCAGATTCTGAAAATCTTGTTTTAGAGCTGAAATATGGGAGGAATACAATTTGGGTCTGCTAACGTTATTTCTGTAGTTTGTAGTCTAGCAGACCAACACAAATAGCAAGGGAATTTGGTCTGCTAGACTACAAACTACANNNNNNNNNNTACAATATAAACATAGAAAAGTTTGGTCTGCTAGACTACAAACTACAAATCAAACATTAGCAGACCAATTTTAGGAAAAATCGACCGAGTGATCAGCGTGCCTGAAAACGACATTGCCGTGGCGATTCTTCGCCTAATTGAGAATGAAAAAGTAGGTTTCTACAGTAATCTTAAAAATCCACGCGGCATTTTTTTTTCTAAAATTCAGRTCGTTTGCGAAGGAGCCGGAGCAATTGGCATCGGAGCAATTCTATCGGGAAAATTGGATTATCTAAAAGGCAAAACCGTCGTATCGATTTTGTCGGGTGGCAATATTGATAGCACGTCGTTGGGAAGGTGTATTGAAAGAGGTATTTAGGGAGACTACAAACTACGCAATTATTTAGCAGACCCAACTTTTTTCTAGGATTGGCCTATGATCATCGTGTGATTCGTCTATCGGTAATAATTCCGGACAAGCCAGGTGGCTTATCGAAATTGACTGGTTTGGTGGGAGATTTACAAGGGAATGTGAGGGATTTGTACTTGGTAATTGGGACTTAATTGGGCGGCTAATTACTTAATTATTTTAGGAACGAGCATTTATGAGAAACGACATGTCTAGTCAACGAGTCAAAATGGTCATCGAGGTGCGGGGAAAAGAGCATGAGGAGCAATTAAAAGAGAAACTGGAAAAGGAGTACGATCCATCGAATTGCCAATTCAAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>284 266 210 117 97 26</canonical_bands>
                <polymorphic_bands>327 284 266 97 26</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>467 348 144 35 6</canonical_bands>
                <polymorphic_bands>467 383 144 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAGAATGAAAAAGTAGGTTTC</pcr_primer_p1>
		<pcr_primer_p2>TGCTAAATAATTGCGTAGTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTGAGAATGAAAAAGTAGGTTTCTACAGTAATCTTAAAAATCCACGCGGCATTTTTTTTTCTAAAATTCAGATCGTTTGCGAAGGAGCCGGAGCAATTGGCATCGGAGCAATTCTATCGGGAAAATTGGATTATCTAAAAGGCAAAACCGTCGTATCGATTTTGTCGGGTGGCAATATTGATAGCACGTCGTTGGGAAGGTGTATTGAAAGAGGTATTTAGGGAGACTACAAACTACGCAATTATTTAGCA</canonical_amplicon>
		<polymorphic_amplicon>TTGAGAATGAAAAAGTAGGTTTCTACAGTAATCTTAAAAATCCACGCGGCATTTTTTTTTCTAAAATTCAGRTCGTTTGCGAAGGAGCCGGAGCAATTGGCATCGGAGCAATTCTATCGGGAAAATTGGATTATCTAAAAGGCAAAACCGTCGTATCGATTTTGTCGGGTGGCAATATTGATAGCACGTCGTTGGGAAGGTGTATTGAAAGAGGTATTTAGGGAGACTACAAACTACGCAATTATTTAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15898</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>383607</contig_pos>
        <strand></strand>
        <context>TTTGCGAAGG[A/T]GCCGGAGCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAATCCACGCGGCATTTTTTTTTCTAAAATTCAGATCGTTTGCGAAGG</left_flank>
        <right_flank>GCCGGAGCAATTGGCATCGGAGCAATTCTATCGGGAAAATTGGATTATCT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTTAAAATTCTATCAAACATCCCTTCTCACATTATTGGAGAAAAACCGCATCAAACGTACTGTTTTGGGCTTTGAAAATGCGATCTTTGGAATTGGCGTATTTGAAAACCACAGTCTATCATTTTTCAGATTCTGAAAATCTTGTTTTAGAGCTGAAATATGGGAGGAATACAATTTGGGTCTGCTAACGTTATTTCTGTAGTTTGTAGTCTAGCAGACCAACACAAATAGCAAGGGAATTTGGTCTGCTAGACTACAAACTACANNNNNNNNNNTACAATATAAACATAGAAAAGTTTGGTCTGCTAGACTACAAACTACAAATCAAACATTAGCAGACCAATTTTAGGAAAAATCGACCGAGTGATCAGCGTGCCTGAAAACGACATTGCCGTGGCGATTCTTCGCCTAATTGAGAATGAAAAAGTAGGTTTCTACAGTAATCTTAAAAATCCACGCGGCATTTTTTTTTCTAAAATTCAGATCGTTTGCGAAGGAGCCGGAGCAATTGGCATCGGAGCAATTCTATCGGGAAAATTGGATTATCTAAAAGGCAAAACCGTCGTATCGATTTTGTCGGGTGGCAATATTGATAGCACGTCGTTGGGAAGGTGTATTGAAAGAGGTATTTAGGGAGACTACAAACTACGCAATTATTTAGCAGACCCAACTTTTTTCTAGGATTGGCCTATGATCATCGTGTGATTCGTCTATCGGTAATAATTCCGGACAAGCCAGGTGGCTTATCGAAATTGACTGGTTTGGTGGGAGATTTACAAGGGAATGTGAGGGATTTGTACTTGGTAATTGGGACTTAATTGGGCGGCTAATTACTTAATTATTTTAGGAACGAGCATTTATGAGAAACGACATGTCTAGTCAACGAGTCAAAATGGTCATCGAGGTGCGGGGAAAAGAGCATGAGGAGCAATTAAAAGAGAAACTGGAAAAGGAGTACGATCCATCGAATTGCCAATTCAAGAATAGCAGTCGCCTGG</canonical>
            <polymorphic>TTGTTAAAATTCTATCAAACATCCCTTCTCACATTATTGGAGAAAAACCGCATCAAACGTACTGTTTTGGGCTTTGAAAATGCGATCTTTGGAATTGGCGTATTTGAAAACCACAGTCTATCATTTTTCAGATTCTGAAAATCTTGTTTTAGAGCTGAAATATGGGAGGAATACAATTTGGGTCTGCTAACGTTATTTCTGTAGTTTGTAGTCTAGCAGACCAACACAAATAGCAAGGGAATTTGGTCTGCTAGACTACAAACTACANNNNNNNNNNTACAATATAAACATAGAAAAGTTTGGTCTGCTAGACTACAAACTACAAATCAAACATTAGCAGACCAATTTTAGGAAAAATCGACCGAGTGATCAGCGTGCCTGAAAACGACATTGCCGTGGCGATTCTTCGCCTAATTGAGAATGAAAAAGTAGGTTTCTACAGTAATCTTAAAAATCCACGCGGCATTTTTTTTTCTAAAATTCAGATCGTTTGCGAAGGWGCCGGAGCAATTGGCATCGGAGCAATTCTATCGGGAAAATTGGATTATCTAAAAGGCAAAACCGTCGTATCGATTTTGTCGGGTGGCAATATTGATAGCACGTCGTTGGGAAGGTGTATTGAAAGAGGTATTTAGGGAGACTACAAACTACGCAATTATTTAGCAGACCCAACTTTTTTCTAGGATTGGCCTATGATCATCGTGTGATTCGTCTATCGGTAATAATTCCGGACAAGCCAGGTGGCTTATCGAAATTGACTGGTTTGGTGGGAGATTTACAAGGGAATGTGAGGGATTTGTACTTGGTAATTGGGACTTAATTGGGCGGCTAATTACTTAATTATTTTAGGAACGAGCATTTATGAGAAACGACATGTCTAGTCAACGAGTCAAAATGGTCATCGAGGTGCGGGGAAAAGAGCATGAGGAGCAATTAAAAGAGAAACTGGAAAAGGAGTACGATCCATCGAATTGCCAATTCAAGAATAGCAGTCGCCTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>347 188 172 84 83 71 47 8</canonical_bands>
                <polymorphic_bands>535 172 84 83 71 47 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAGAATGAAAAAGTAGGTTTC</pcr_primer_p1>
		<pcr_primer_p2>TGCTAAATAATTGCGTAGTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTGAGAATGAAAAAGTAGGTTTCTACAGTAATCTTAAAAATCCACGCGGCATTTTTTTTTCTAAAATTCAGATCGTTTGCGAAGGAGCCGGAGCAATTGGCATCGGAGCAATTCTATCGGGAAAATTGGATTATCTAAAAGGCAAAACCGTCGTATCGATTTTGTCGGGTGGCAATATTGATAGCACGTCGTTGGGAAGGTGTATTGAAAGAGGTATTTAGGGAGACTACAAACTACGCAATTATTTAGCA</canonical_amplicon>
		<polymorphic_amplicon>TTGAGAATGAAAAAGTAGGTTTCTACAGTAATCTTAAAAATCCACGCGGCATTTTTTTTTCTAAAATTCAGATCGTTTGCGAAGGWGCCGGAGCAATTGGCATCGGAGCAATTCTATCGGGAAAATTGGATTATCTAAAAGGCAAAACCGTCGTATCGATTTTGTCGGGTGGCAATATTGATAGCACGTCGTTGGGAAGGTGTATTGAAAGAGGTATTTAGGGAGACTACAAACTACGCAATTATTTAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15899</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>383828</contig_pos>
        <strand></strand>
        <context>GTCTATCGGT[A/G]ATAATTCCGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACTTTTTTCTAGGATTGGCCTATGATCATCGTGTGATTCGTCTATCGGT</left_flank>
        <right_flank>ATAATTCCGGACAAGCCAGGTGGCTTATCGAAATTGACTGGTTTGGTGGG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACACAAATAGCAAGGGAATTTGGTCTGCTAGACTACAAACTACANNNNNNNNNNTACAATATAAACATAGAAAAGTTTGGTCTGCTAGACTACAAACTACAAATCAAACATTAGCAGACCAATTTTAGGAAAAATCGACCGAGTGATCAGCGTGCCTGAAAACGACATTGCCGTGGCGATTCTTCGCCTAATTGAGAATGAAAAAGTAGGTTTCTACAGTAATCTTAAAAATCCACGCGGCATTTTTTTTTCTAAAATTCAGATCGTTTGCGAAGGAGCCGGAGCAATTGGCATCGGAGCAATTCTATCGGGAAAATTGGATTATCTAAAAGGCAAAACCGTCGTATCGATTTTGTCGGGTGGCAATATTGATAGCACGTCGTTGGGAAGGTGTATTGAAAGAGGTATTTAGGGAGACTACAAACTACGCAATTATTTAGCAGACCCAACTTTTTTCTAGGATTGGCCTATGATCATCGTGTGATTCGTCTATCGGTAATAATTCCGGACAAGCCAGGTGGCTTATCGAAATTGACTGGTTTGGTGGGAGATTTACAAGGGAATGTGAGGGATTTGTACTTGGTAATTGGGACTTAATTGGGCGGCTAATTACTTAATTATTTTAGGAACGAGCATTTATGAGAAACGACATGTCTAGTCAACGAGTCAAAATGGTCATCGAGGTGCGGGGAAAAGAGCATGAGGAGCAATTAAAAGAGAAACTGGAAAAGGAGTACGATCCATCGAATTGCCAATTCAAGAATAGCAGTCGCCTGGCTGGCCTATAAAACTACTTCAACAACAAATTTGATTTTTTCAATAAAAATTAATTTTAAAGGATTCAATAAAATCACATACAAAACACCCATAAACATTTGAATATTTGAATATACATGATTTTTAAATAATAATTAAGGGAAAACAATAAATAAGGGGACATTATAATTTTACTCGATTGATTTGATAGCTACAGTAGGAAAATCGGCGCGAAGAGCCAG</canonical>
            <polymorphic>CAACACAAATAGCAAGGGAATTTGGTCTGCTAGACTACAAACTACANNNNNNNNNNTACAATATAAACATAGAAAAGTTTGGTCTGCTAGACTACAAACTACAAATCAAACATTAGCAGACCAATTTTAGGAAAAATCGACCGAGTGATCAGCGTGCCTGAAAACGACATTGCCGTGGCGATTCTTCGCCTAATTGAGAATGAAAAAGTAGGTTTCTACAGTAATCTTAAAAATCCACGCGGCATTTTTTTTTCTAAAATTCAGATCGTTTGCGAAGGAGCCGGAGCAATTGGCATCGGAGCAATTCTATCGGGAAAATTGGATTATCTAAAAGGCAAAACCGTCGTATCGATTTTGTCGGGTGGCAATATTGATAGCACGTCGTTGGGAAGGTGTATTGAAAGAGGTATTTAGGGAGACTACAAACTACGCAATTATTTAGCAGACCCAACTTTTTTCTAGGATTGGCCTATGATCATCGTGTGATTCGTCTATCGGTRATAATTCCGGACAAGCCAGGTGGCTTATCGAAATTGACTGGTTTGGTGGGAGATTTACAAGGGAATGTGAGGGATTTGTACTTGGTAATTGGGACTTAATTGGGCGGCTAATTACTTAATTATTTTAGGAACGAGCATTTATGAGAAACGACATGTCTAGTCAACGAGTCAAAATGGTCATCGAGGTGCGGGGAAAAGAGCATGAGGAGCAATTAAAAGAGAAACTGGAAAAGGAGTACGATCCATCGAATTGCCAATTCAAGAATAGCAGTCGCCTGGCTGGCCTATAAAACTACTTCAACAACAAATTTGATTTTTTCAATAAAAATTAATTTTAAAGGATTCAATAAAATCACATACAAAACACCCATAAACATTTGAATATTTGAATATACATGATTTTTAAATAATAATTAAGGGAAAACAATAAATAAGGGGACATTATAATTTTACTCGATTGATTTGATAGCTACAGTAGGAAAATCGGCGCGAAGAGCCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGACTACAAACTACGCAATTA</pcr_primer_p1>
		<pcr_primer_p2>GTTGACTAGACATGTCGTTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGAGACTACAAACTACGCAATTATTTAGCAGACCCAACTTTTTTCTAGGATTGGCCTATGATCATCGTGTGATTCGTCTATCGGTAATAATTCCGGACAAGCCAGGTGGCTTATCGAAATTGACTGGTTTGGTGGGAGATTTACAAGGGAATGTGAGGGATTTGTACTTGGTAATTGGGACTTAATTGGGCGGCTAATTACTTAATTATTTTAGGAACGAGCATTTATGAGAAACGACATGTCTAGTCAAC</canonical_amplicon>
		<polymorphic_amplicon>GGAGACTACAAACTACGCAATTATTTAGCAGACCCAACTTTTTTCTAGGATTGGCCTATGATCATCGTGTGATTCGTCTATCGGTRATAATTCCGGACAAGCCAGGTGGCTTATCGAAATTGACTGGTTTGGTGGGAGATTTACAAGGGAATGTGAGGGATTTGTACTTGGTAATTGGGACTTAATTGGGCGGCTAATTACTTAATTATTTTAGGAACGAGCATTTATGAGAAACGACATGTCTAGTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15900</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>386439</contig_pos>
        <strand>+</strand>
        <context>TGGAGCAGTA[A/G]ATTTTTTGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTCAACTTCCAGTGCATCTGGCACGTCTTCTAAACCTTCTGGAGCAGTA</left_flank>
        <right_flank>ATTTTTTGTGATGAACGACGTCGGCAACCTGGCGATTCAGATGAGACAAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCAGAAGAGCTGTGGCGTTGTTAATAGTAGCACAGACGCTGTCGACGTTTCCAGATCCAGCAGCACGTCGGATGGATTTACGAATGATGAAAACGACGTCATCAACAAGGGAGCTTGTCAATGTTCCCACGTCTTCTTTCGCGTCAGACTTGATCGCCTTCTGGACCGATTTCATCATATAAAAATGTTCCAGAAGACAATAATGACCTATCAACTCTTGCATTTTCGTCCCGACACGACTTCTATTCAACAACTGATCCATCTTCTGCTCCTTCGCCTCTTTTCGAAGACGTTGTCTTTCCAGACGCGCTTCTTCGTCTTCTTCTTCATCACCATCTCCAGAGGGACTTCTTGCCAGGTCCGCATCGTTCTTTCCTATTCGACGTGACACAAATCGCCAATACATCTCTACTGACGTGTTCATCATGCAGATTTCAGAAGCGATGGCGTCAACTTCCAGTGCATCTGGCACGTCTTCTAAACCTTCTGGAGCAGTAAATTTTTTGTGATGAACGACGTCGGCAACCTGGCGATTCAGATGAGACAAACGGCGACGTGTATCAAATTCTTCGATGAGGCGTCTGAAGAATTCGTCGATTCTCGCCTAAAATTTGATAGATTAAAAAACCTAGTTTAAAAAAATCAAACCTGAAGAATAAACATAAAATCCAACAACTTTTCCAACCCATACGAGTGTTCTAGCACTGGAAGATTGGATTCAATAATTTCAGCGACGCCTTCAAAGAACATGAAGAGCGTGTCAGCGTACAGAACGTTCCGACGATTGTCATCCGTGCCTCCGGCTCGCATGATCTAAAATATGGATTTTTATAGTTTGTAGTCAAAAAAAAACTCACCGCCAAATTCTCCTCCGCCAATTTATCAATTTTCTGGTTCAAAAACACTGAGTATCTCTGCAGACCTTCGTCAGCCTCGTGTATCAATGGGAATAATTTTACGAAACGCTGCATTTCAGCAACGTCTCCTTTTTGCACAGC</canonical>
            <polymorphic>ATCCAGAAGAGCTGTGGCGTTGTTAATAGTAGCACAGACGCTGTCGACGTTTCCAGATCCAGCAGCACGTCGGATGGATTTACGAATGATGAAAACGACGTCATCAACAAGGGAGCTTGTCAATGTTCCCACGTCTTCTTTCGCGTCAGACTTGATCGCCTTCTGGACCGATTTCATCATATAAAAATGTTCCAGAAGACAATAATGACCTATCAACTCTTGCATTTTCGTCCCGACACGACTTCTATTCAACAACTGATCCATCTTCTGCTCCTTCGCCTCTTTTCGAAGACGTTGTCTTTCCAGACGCGCTTCTTCGTCTTCTTCTTCATCACCATCTCCAGAGGGACTTCTTGCCAGGTCCGCATCGTTCTTTCCTATTCGACGTGACACAAATCGCCAATACATCTCTACTGACGTGTTCATCATGCAGATTTCAGAAGCGATGGCGTCAACTTCCAGTGCATCTGGCACGTCTTCTAAACCTTCTGGAGCAGTARATTTTTTGTGATGAACGACGTCGGCAACCTGGCGATTCAGATGAGACAAACGGCGACGTGTATCAAATTCTTCGATGAGGCGTCTGAAGAATTCGTCGATTCTCGCCTAAAATTTGATAGATTAAAAAACCTAGTTTAAAAAAATCAAACCTGAAGAATAAACATAAAATCCAACAACTTTTCCAACCCATACGAGTGTTCTAGCACTGGAAGATTGGATTCAATAATTTCAGCGACGCCTTCAAAGAACATGAAGAGCGTGTCAGCGTACAGAACGTTCCGACGATTGTCATCCGTGCCTCCGGCTCGCATGATCTAAAATATGGATTTTTATAGTTTGTAGTCAAAAAAAAACTCACCGCCAAATTCTCCTCCGCCAATTTATCAATTTTCTGGTTCAAAAACACTGAGTATCTCTGCAGACCTTCGTCAGCCTCGTGTATCAATGGGAATAATTTTACGAAACGCTGCATTTCAGCAACGTCTCCTTTTTGCACAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>499 254 136 66 24 21</canonical_bands>
                <polymorphic_bands>565 254 136 24 21</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>499 139 115 67 66 47 24 21 14 8</canonical_bands>
                <polymorphic_bands>565 139 115 67 47 24 21 14 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTCCTATTCGACGTGAC</pcr_primer_p1>
		<pcr_primer_p2>TATCAAATTTTAGGCGAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTTTCCTATTCGACGTGACACAAATCGCCAATACATCTCTACTGACGTGTTCATCATGCAGATTTCAGAAGCGATGGCGTCAACTTCCAGTGCATCTGGCACGTCTTCTAAACCTTCTGGAGCAGTAAATTTTTTGTGATGAACGACGTCGGCAACCTGGCGATTCAGATGAGACAAACGGCGACGTGTATCAAATTCTTCGATGAGGCGTCTGAAGAATTCGTCGATTCTCGCCTAAAATTTGATA</canonical_amplicon>
		<polymorphic_amplicon>TCTTTCCTATTCGACGTGACACAAATCGCCAATACATCTCTACTGACGTGTTCATCATGCAGATTTCAGAAGCGATGGCGTCAACTTCCAGTGCATCTGGCACGTCTTCTAAACCTTCTGGAGCAGTARATTTTTTGTGATGAACGACGTCGGCAACCTGGCGATTCAGATGAGACAAACGGCGACGTGTATCAAATTCTTCGATGAGGCGTCTGAAGAATTCGTCGATTCTCGCCTAAAATTTGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15901</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>386408</contig_pos>
        <strand>+</strand>
        <context>CCAGTGCATC[A/T]GGCACGTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGTTCATCATGCAGATTTCAGAAGCGATGGCGTCAACTTCCAGTGCATC</left_flank>
        <right_flank>GGCACGTCTTCTAAACCTTCTGGAGCAGTAAATTTTTTGTGATGAACGAC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCGTGATGGAGAGATCCATGGACTACTGTATCCAGAAGAGCTGTGGCGTTGTTAATAGTAGCACAGACGCTGTCGACGTTTCCAGATCCAGCAGCACGTCGGATGGATTTACGAATGATGAAAACGACGTCATCAACAAGGGAGCTTGTCAATGTTCCCACGTCTTCTTTCGCGTCAGACTTGATCGCCTTCTGGACCGATTTCATCATATAAAAATGTTCCAGAAGACAATAATGACCTATCAACTCTTGCATTTTCGTCCCGACACGACTTCTATTCAACAACTGATCCATCTTCTGCTCCTTCGCCTCTTTTCGAAGACGTTGTCTTTCCAGACGCGCTTCTTCGTCTTCTTCTTCATCACCATCTCCAGAGGGACTTCTTGCCAGGTCCGCATCGTTCTTTCCTATTCGACGTGACACAAATCGCCAATACATCTCTACTGACGTGTTCATCATGCAGATTTCAGAAGCGATGGCGTCAACTTCCAGTGCATCTGGCACGTCTTCTAAACCTTCTGGAGCAGTAAATTTTTTGTGATGAACGACGTCGGCAACCTGGCGATTCAGATGAGACAAACGGCGACGTGTATCAAATTCTTCGATGAGGCGTCTGAAGAATTCGTCGATTCTCGCCTAAAATTTGATAGATTAAAAAACCTAGTTTAAAAAAATCAAACCTGAAGAATAAACATAAAATCCAACAACTTTTCCAACCCATACGAGTGTTCTAGCACTGGAAGATTGGATTCAATAATTTCAGCGACGCCTTCAAAGAACATGAAGAGCGTGTCAGCGTACAGAACGTTCCGACGATTGTCATCCGTGCCTCCGGCTCGCATGATCTAAAATATGGATTTTTATAGTTTGTAGTCAAAAAAAAACTCACCGCCAAATTCTCCTCCGCCAATTTATCAATTTTCTGGTTCAAAAACACTGAGTATCTCTGCAGACCTTCGTCAGCCTCGTGTATCAATGGGAATAATTTTACGAAACGCT</canonical>
            <polymorphic>TGTCGTGATGGAGAGATCCATGGACTACTGTATCCAGAAGAGCTGTGGCGTTGTTAATAGTAGCACAGACGCTGTCGACGTTTCCAGATCCAGCAGCACGTCGGATGGATTTACGAATGATGAAAACGACGTCATCAACAAGGGAGCTTGTCAATGTTCCCACGTCTTCTTTCGCGTCAGACTTGATCGCCTTCTGGACCGATTTCATCATATAAAAATGTTCCAGAAGACAATAATGACCTATCAACTCTTGCATTTTCGTCCCGACACGACTTCTATTCAACAACTGATCCATCTTCTGCTCCTTCGCCTCTTTTCGAAGACGTTGTCTTTCCAGACGCGCTTCTTCGTCTTCTTCTTCATCACCATCTCCAGAGGGACTTCTTGCCAGGTCCGCATCGTTCTTTCCTATTCGACGTGACACAAATCGCCAATACATCTCTACTGACGTGTTCATCATGCAGATTTCAGAAGCGATGGCGTCAACTTCCAGTGCATCWGGCACGTCTTCTAAACCTTCTGGAGCAGTAAATTTTTTGTGATGAACGACGTCGGCAACCTGGCGATTCAGATGAGACAAACGGCGACGTGTATCAAATTCTTCGATGAGGCGTCTGAAGAATTCGTCGATTCTCGCCTAAAATTTGATAGATTAAAAAACCTAGTTTAAAAAAATCAAACCTGAAGAATAAACATAAAATCCAACAACTTTTCCAACCCATACGAGTGTTCTAGCACTGGAAGATTGGATTCAATAATTTCAGCGACGCCTTCAAAGAACATGAAGAGCGTGTCAGCGTACAGAACGTTCCGACGATTGTCATCCGTGCCTCCGGCTCGCATGATCTAAAATATGGATTTTTATAGTTTGTAGTCAAAAAAAAACTCACCGCCAAATTCTCCTCCGCCAATTTATCAATTTTCTGGTTCAAAAACACTGAGTATCTCTGCAGACCTTCGTCAGCCTCGTGTATCAATGGGAATAATTTTACGAAACGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTCCTATTCGACGTGAC</pcr_primer_p1>
		<pcr_primer_p2>TATCAAATTTTAGGCGAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTTTCCTATTCGACGTGACACAAATCGCCAATACATCTCTACTGACGTGTTCATCATGCAGATTTCAGAAGCGATGGCGTCAACTTCCAGTGCATCTGGCACGTCTTCTAAACCTTCTGGAGCAGTAAATTTTTTGTGATGAACGACGTCGGCAACCTGGCGATTCAGATGAGACAAACGGCGACGTGTATCAAATTCTTCGATGAGGCGTCTGAAGAATTCGTCGATTCTCGCCTAAAATTTGATA</canonical_amplicon>
		<polymorphic_amplicon>TCTTTCCTATTCGACGTGACACAAATCGCCAATACATCTCTACTGACGTGTTCATCATGCAGATTTCAGAAGCGATGGCGTCAACTTCCAGTGCATCWGGCACGTCTTCTAAACCTTCTGGAGCAGTAAATTTTTTGTGATGAACGACGTCGGCAACCTGGCGATTCAGATGAGACAAACGGCGACGTGTATCAAATTCTTCGATGAGGCGTCTGAAGAATTCGTCGATTCTCGCCTAAAATTTGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15902</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>386272</contig_pos>
        <strand>+</strand>
        <context>TCTTCTTCAT[C/T]ACCATCTCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCGAAGACGTTGTCTTTCCAGACGCGCTTCTTCGTCTTCTTCTTCAT</left_flank>
        <right_flank>ACCATCTCCAGAGGGACTTCTTGCCAGGTCCGCATCGTTCTTTCCTATTC</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTTTGCAGAATTATTCACGGCCAATAAAAATTGCTCTTTTTGAGATTCTGCAGCTTCTTTGACCTGTTTTCCTTGCTGGTAGGCGATGAATGCTTCAGAAGCGAAATTGGAAGACGTGACGTATCCAGATTGAATGTCGTGATGGAGAGATCCATGGACTACTGTATCCAGAAGAGCTGTGGCGTTGTTAATAGTAGCACAGACGCTGTCGACGTTTCCAGATCCAGCAGCACGTCGGATGGATTTACGAATGATGAAAACGACGTCATCAACAAGGGAGCTTGTCAATGTTCCCACGTCTTCTTTCGCGTCAGACTTGATCGCCTTCTGGACCGATTTCATCATATAAAAATGTTCCAGAAGACAATAATGACCTATCAACTCTTGCATTTTCGTCCCGACACGACTTCTATTCAACAACTGATCCATCTTCTGCTCCTTCGCCTCTTTTCGAAGACGTTGTCTTTCCAGACGCGCTTCTTCGTCTTCTTCTTCATCACCATCTCCAGAGGGACTTCTTGCCAGGTCCGCATCGTTCTTTCCTATTCGACGTGACACAAATCGCCAATACATCTCTACTGACGTGTTCATCATGCAGATTTCAGAAGCGATGGCGTCAACTTCCAGTGCATCTGGCACGTCTTCTAAACCTTCTGGAGCAGTAAATTTTTTGTGATGAACGACGTCGGCAACCTGGCGATTCAGATGAGACAAACGGCGACGTGTATCAAATTCTTCGATGAGGCGTCTGAAGAATTCGTCGATTCTCGCCTAAAATTTGATAGATTAAAAAACCTAGTTTAAAAAAATCAAACCTGAAGAATAAACATAAAATCCAACAACTTTTCCAACCCATACGAGTGTTCTAGCACTGGAAGATTGGATTCAATAATTTCAGCGACGCCTTCAAAGAACATGAAGAGCGTGTCAGCGTACAGAACGTTCCGACGATTGTCATCCGTGCCTCCGGCTCGCATGATCTAAAATATGGATTTTTA</canonical>
            <polymorphic>AGCTTTGCAGAATTATTCACGGCCAATAAAAATTGCTCTTTTTGAGATTCTGCAGCTTCTTTGACCTGTTTTCCTTGCTGGTAGGCGATGAATGCTTCAGAAGCGAAATTGGAAGACGTGACGTATCCAGATTGAATGTCGTGATGGAGAGATCCATGGACTACTGTATCCAGAAGAGCTGTGGCGTTGTTAATAGTAGCACAGACGCTGTCGACGTTTCCAGATCCAGCAGCACGTCGGATGGATTTACGAATGATGAAAACGACGTCATCAACAAGGGAGCTTGTCAATGTTCCCACGTCTTCTTTCGCGTCAGACTTGATCGCCTTCTGGACCGATTTCATCATATAAAAATGTTCCAGAAGACAATAATGACCTATCAACTCTTGCATTTTCGTCCCGACACGACTTCTATTCAACAACTGATCCATCTTCTGCTCCTTCGCCTCTTTTCGAAGACGTTGTCTTTCCAGACGCGCTTCTTCGTCTTCTTCTTCATYACCATCTCCAGAGGGACTTCTTGCCAGGTCCGCATCGTTCTTTCCTATTCGACGTGACACAAATCGCCAATACATCTCTACTGACGTGTTCATCATGCAGATTTCAGAAGCGATGGCGTCAACTTCCAGTGCATCTGGCACGTCTTCTAAACCTTCTGGAGCAGTAAATTTTTTGTGATGAACGACGTCGGCAACCTGGCGATTCAGATGAGACAAACGGCGACGTGTATCAAATTCTTCGATGAGGCGTCTGAAGAATTCGTCGATTCTCGCCTAAAATTTGATAGATTAAAAAACCTAGTTTAAAAAAATCAAACCTGAAGAATAAACATAAAATCCAACAACTTTTCCAACCCATACGAGTGTTCTAGCACTGGAAGATTGGATTCAATAATTTCAGCGACGCCTTCAAAGAACATGAAGAGCGTGTCAGCGTACAGAACGTTCCGACGATTGTCATCCGTGCCTCCGGCTCGCATGATCTAAAATATGGATTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>138 107 101 96 64 56 55 50 43 40 37 36 35 33 29 23 19 18 9 8 3</canonical_bands>
                <polymorphic_bands>151 138 107 101 64 56 50 43 40 37 36 35 33 29 23 19 18 9 8 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGTTCCAGAAGACAATAA</pcr_primer_p1>
		<pcr_primer_p2>ATGATGAACACGTCAGTAGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGTTCCAGAAGACAATAATGACCTATCAACTCTTGCATTTTCGTCCCGACACGACTTCTATTCAACAACTGATCCATCTTCTGCTCCTTCGCCTCTTTTCGAAGACGTTGTCTTTCCAGACGCGCTTCTTCGTCTTCTTCTTCATCACCATCTCCAGAGGGACTTCTTGCCAGGTCCGCATCGTTCTTTCCTATTCGACGTGACACAAATCGCCAATACATCTCTACTGACGTGTTCATCAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGTTCCAGAAGACAATAATGACCTATCAACTCTTGCATTTTCGTCCCGACACGACTTCTATTCAACAACTGATCCATCTTCTGCTCCTTCGCCTCTTTTCGAAGACGTTGTCTTTCCAGACGCGCTTCTTCGTCTTCTTCTTCATYACCATCTCCAGAGGGACTTCTTGCCAGGTCCGCATCGTTCTTTCCTATTCGACGTGACACAAATCGCCAATACATCTCTACTGACGTGTTCATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15903</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>64956</contig_pos>
        <strand>+</strand>
        <context>ATTCAAATTT[A/T]CAGAAATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTT</left_flank>
        <right_flank>CAGAAATTTTCAGCCAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACCAATTTTGGACCATTTTTGACCTATTTTAAGCCGATTTCAACTGATTTCTGACCTTTTACGACCAATTTTGGACCATTTTTGACAGATTTTGGACCATTTTTGGCTGATTTCGGACCATTTTTGACAGATTTTGGACCATTTTTGACCAATTTTGGATCATTTTTGACAGATTTTGGACCATTTTTGACCAATTTTGGATCATTTTTGACAGATTTTGGACCATTTTTGGCTGATTTCGGACCATTTTTGACAGATTTTGGACCATTTTTGGCTGATTTCGGACCATTTTTGACTGATTTCGGACCATTTTCAGATTATTCCTAAAACTGCGCGGTGTCAAATGCGCAAGCTCCATTATGGCCTATGTGATATGGAAGGTGGTCCAGGAGGTCGTCATGGTTCCAGCTCTCGTCATTTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCCAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCATTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGC</canonical>
            <polymorphic>TAACCAATTTTGGACCATTTTTGACCTATTTTAAGCCGATTTCAACTGATTTCTGACCTTTTACGACCAATTTTGGACCATTTTTGACAGATTTTGGACCATTTTTGGCTGATTTCGGACCATTTTTGACAGATTTTGGACCATTTTTGACCAATTTTGGATCATTTTTGACAGATTTTGGACCATTTTTGACCAATTTTGGATCATTTTTGACAGATTTTGGACCATTTTTGGCTGATTTCGGACCATTTTTGACAGATTTTGGACCATTTTTGGCTGATTTCGGACCATTTTTGACTGATTTCGGACCATTTTCAGATTATTCCTAAAACTGCGCGGTGTCAAATGCGCAAGCTCCATTATGGCCTATGTGATATGGAAGGTGGTCCAGGAGGTCGTCATGGTTCCAGCTCTCGTCATTTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTWCAGAAATTTTCAGCCAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCATTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>329 159 126 100 69 63 54 42 26 21 11</canonical_bands>
                <polymorphic_bands>329 159 126 126 69 63 54 42 21 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCATTTTCAGCTTTATTTGTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTCACATTTTCCCAACTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTCATTTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCCAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAAT</canonical_amplicon>
		<polymorphic_amplicon>GTCATTTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTWCAGAAATTTTCAGCCAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15904</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>64971</contig_pos>
        <strand>+</strand>
        <context>AATTTTCAGC[A/C]AAAAGTCGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGC</left_flank>
        <right_flank>AAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTTTGACCTATTTTAAGCCGATTTCAACTGATTTCTGACCTTTTACGACCAATTTTGGACCATTTTTGACAGATTTTGGACCATTTTTGGCTGATTTCGGACCATTTTTGACAGATTTTGGACCATTTTTGACCAATTTTGGATCATTTTTGACAGATTTTGGACCATTTTTGACCAATTTTGGATCATTTTTGACAGATTTTGGACCATTTTTGGCTGATTTCGGACCATTTTTGACAGATTTTGGACCATTTTTGGCTGATTTCGGACCATTTTTGACTGATTTCGGACCATTTTCAGATTATTCCTAAAACTGCGCGGTGTCAAATGCGCAAGCTCCATTATGGCCTATGTGATATGGAAGGTGGTCCAGGAGGTCGTCATGGTTCCAGCTCTCGTCATTTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCCAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCATTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATT</canonical>
            <polymorphic>CATTTTTGACCTATTTTAAGCCGATTTCAACTGATTTCTGACCTTTTACGACCAATTTTGGACCATTTTTGACAGATTTTGGACCATTTTTGGCTGATTTCGGACCATTTTTGACAGATTTTGGACCATTTTTGACCAATTTTGGATCATTTTTGACAGATTTTGGACCATTTTTGACCAATTTTGGATCATTTTTGACAGATTTTGGACCATTTTTGGCTGATTTCGGACCATTTTTGACAGATTTTGGACCATTTTTGGCTGATTTCGGACCATTTTTGACTGATTTCGGACCATTTTCAGATTATTCCTAAAACTGCGCGGTGTCAAATGCGCAAGCTCCATTATGGCCTATGTGATATGGAAGGTGGTCCAGGAGGTCGTCATGGTTCCAGCTCTCGTCATTTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCMAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCATTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>131 126 98 87 78 73 65 45 42 32 32 22 22 20 16 16 12 11 11 11 11 10 10 10 9</canonical_bands>
                <polymorphic_bands>185 131 126 78 73 65 45 42 32 32 22 22 20 16 16 12 11 11 11 11 10 10 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCATTTTCAGCTTTATTTGTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTCACATTTTCCCAACTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTCATTTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCCAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAAT</canonical_amplicon>
		<polymorphic_amplicon>GTCATTTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCMAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15905</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>64986</contig_pos>
        <strand>+</strand>
        <context>GTCGCAAAAT[C/T]CCAAATTTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCCAAAAGTCGCAAAAT</left_flank>
        <right_flank>CCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAGCCGATTTCAACTGATTTCTGACCTTTTACGACCAATTTTGGACCATTTTTGACAGATTTTGGACCATTTTTGGCTGATTTCGGACCATTTTTGACAGATTTTGGACCATTTTTGACCAATTTTGGATCATTTTTGACAGATTTTGGACCATTTTTGACCAATTTTGGATCATTTTTGACAGATTTTGGACCATTTTTGGCTGATTTCGGACCATTTTTGACAGATTTTGGACCATTTTTGGCTGATTTCGGACCATTTTTGACTGATTTCGGACCATTTTCAGATTATTCCTAAAACTGCGCGGTGTCAAATGCGCAAGCTCCATTATGGCCTATGTGATATGGAAGGTGGTCCAGGAGGTCGTCATGGTTCCAGCTCTCGTCATTTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCCAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCATTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATTTTCACTCTAATTTAG</canonical>
            <polymorphic>TTAAGCCGATTTCAACTGATTTCTGACCTTTTACGACCAATTTTGGACCATTTTTGACAGATTTTGGACCATTTTTGGCTGATTTCGGACCATTTTTGACAGATTTTGGACCATTTTTGACCAATTTTGGATCATTTTTGACAGATTTTGGACCATTTTTGACCAATTTTGGATCATTTTTGACAGATTTTGGACCATTTTTGGCTGATTTCGGACCATTTTTGACAGATTTTGGACCATTTTTGGCTGATTTCGGACCATTTTTGACTGATTTCGGACCATTTTCAGATTATTCCTAAAACTGCGCGGTGTCAAATGCGCAAGCTCCATTATGGCCTATGTGATATGGAAGGTGGTCCAGGAGGTCGTCATGGTTCCAGCTCTCGTCATTTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCCAAAAGTCGCAAAATYCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCATTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATTTTCACTCTAATTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCATTTTCAGCTTTATTTGTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTCACATTTTCCCAACTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTCATTTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCCAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAAT</canonical_amplicon>
		<polymorphic_amplicon>GTCATTTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCCAAAAGTCGCAAAATYCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15906</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>65077</contig_pos>
        <strand>+</strand>
        <context>GCCAAAATCC[C/G]CCATTTTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCC</left_flank>
        <right_flank>CCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTGACAGATTTTGGACCATTTTTGACCAATTTTGGATCATTTTTGACAGATTTTGGACCATTTTTGACCAATTTTGGATCATTTTTGACAGATTTTGGACCATTTTTGGCTGATTTCGGACCATTTTTGACAGATTTTGGACCATTTTTGGCTGATTTCGGACCATTTTTGACTGATTTCGGACCATTTTCAGATTATTCCTAAAACTGCGCGGTGTCAAATGCGCAAGCTCCATTATGGCCTATGTGATATGGAAGGTGGTCCAGGAGGTCGTCATGGTTCCAGCTCTCGTCATTTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCCAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCATTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATTTTCACTCTAATTTAGGCCATTTTAGGCTACTGTCAGGCTAATAAATTTGGACCGATTTAGGCCAGAATGGTACTGTTCAAGGCCGATTTTCCATCATTTTGGGCCA</canonical>
            <polymorphic>ATTTTTGACAGATTTTGGACCATTTTTGACCAATTTTGGATCATTTTTGACAGATTTTGGACCATTTTTGACCAATTTTGGATCATTTTTGACAGATTTTGGACCATTTTTGGCTGATTTCGGACCATTTTTGACAGATTTTGGACCATTTTTGGCTGATTTCGGACCATTTTTGACTGATTTCGGACCATTTTCAGATTATTCCTAAAACTGCGCGGTGTCAAATGCGCAAGCTCCATTATGGCCTATGTGATATGGAAGGTGGTCCAGGAGGTCGTCATGGTTCCAGCTCTCGTCATTTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCCAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCSCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCATTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATTTTCACTCTAATTTAGGCCATTTTAGGCTACTGTCAGGCTAATAAATTTGGACCGATTTAGGCCAGAATGGTACTGTTCAAGGCCGATTTTCCATCATTTTGGGCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>439 295 207 59</canonical_bands>
                <polymorphic_bands>439 354 207</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAATTTGAGACTTCTAGACC</pcr_primer_p1>
		<pcr_primer_p2>CTACTCACCCAAAAACAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>211</pcr_amplicon_size>
		<canonical_amplicon>CCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCATTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAG</canonical_amplicon>
		<polymorphic_amplicon>CCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCSCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCATTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15907</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>65126</contig_pos>
        <strand></strand>
        <context>GAATCGTGGC[A/G]RTCAAATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGC</left_flank>
        <right_flank>TTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGATTTTGGACCATTTTTGACCAATTTTGGATCATTTTTGACAGATTTTGGACCATTTTTGGCTGATTTCGGACCATTTTTGACAGATTTTGGACCATTTTTGGCTGATTTCGGACCATTTTTGACTGATTTCGGACCATTTTCAGATTATTCCTAAAACTGCGCGGTGTCAAATGCGCAAGCTCCATTATGGCCTATGTGATATGGAAGGTGGTCCAGGAGGTCGTCATGGTTCCAGCTCTCGTCATTTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCCAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCATTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATTTTCACTCTAATTTAGGCCATTTTAGGCTACTGTCAGGCTAATAAATTTGGACCGATTTAGGCCAGAATGGTACTGTTCAAGGCCGATTTTCCATCATTTTGGGCCACATTTAGTCCATTTTCAGGCTATTCTAAGCCTATTTTGGACCACTCTGG</canonical>
            <polymorphic>ACAGATTTTGGACCATTTTTGACCAATTTTGGATCATTTTTGACAGATTTTGGACCATTTTTGGCTGATTTCGGACCATTTTTGACAGATTTTGGACCATTTTTGGCTGATTTCGGACCATTTTTGACTGATTTCGGACCATTTTCAGATTATTCCTAAAACTGCGCGGTGTCAAATGCGCAAGCTCCATTATGGCCTATGTGATATGGAAGGTGGTCCAGGAGGTCGTCATGGTTCCAGCTCTCGTCATTTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCCAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCRTTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATTTTCACTCTAATTTAGGCCATTTTAGGCTACTGTCAGGCTAATAAATTTGGACCGATTTAGGCCAGAATGGTACTGTTCAAGGCCGATTTTCCATCATTTTGGGCCACATTTAGTCCATTTTCAGGCTATTCTAAGCCTATTTTGGACCACTCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAATTTGAGACTTCTAGACC</pcr_primer_p1>
		<pcr_primer_p2>CTACTCACCCAAAAACAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>211</pcr_amplicon_size>
		<canonical_amplicon>CCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCATTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAG</canonical_amplicon>
		<polymorphic_amplicon>CCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCRTTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15908</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>67754</contig_pos>
        <strand>+</strand>
        <context>ATTTTAAAGC[C/T]ATTTAGAKAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGATGTGCAGATAGGGGGTACTGTACCTGCACATCTAACTATTTTAAAGC</left_flank>
        <right_flank>ATTTAGAAAGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAGCATCTGAGCTCGATTTTTGTGCACAATTTGCATGATTCCGGGTGGCTGGAGCCACGGTTCACCGTCCACTTGAACCGGGATGGGCTCGTCGCCAAGGATTACGATACGCACGTGCCGACACTGAGCAATACGGTGGTTTTGGAGACGGTAGGCGTTTGGGACACGAGACGTCGCCACGTGGATCACACCGAAGAGGGCGACGACCTGGAAGTATTTTAGATGGGGGTACTGTAGTTTTTTTCAGGAGTACTGTATCTATCTATCTAGAGATGCAGGCAAGTTAGATGTGCAGGTAGCGCTACCAGGAGTACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACTAGTCAGATGTGCAGATAGGGGGTACTGTACCTGCACATCTAACTATTTTAAAGCCATTTAGAAAGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTAGCAAAATTTGGAAAATCCGAAAATTCCAAAAGTTCGAAAATCCAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCAAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGACCTAGAAAATCCAAAAATCTAGGTTACGGTACCTGCACATCAAAAAACTAACTAATGTCATTTTTAGCACACTTTTAGAGGTATTTCAGTCAGAATTTCACCAATTTCGAAAATTCGAAAAATTCATAAAATCATAATATAGGATTACTGTACCTCCAAAATGCGGTCATCAAAACTTTGGACCGTAAACTCCGGTCCCTCCTTATTCCGGCCCCAAAAGTTGGCACCGCCCGAGTACGATGGAATATTCAAGATTACGATTCCCTGTAGACTCGGCAA</canonical>
            <polymorphic>CGAGCATCTGAGCTCGATTTTTGTGCACAATTTGCATGATTCCGGGTGGCTGGAGCCACGGTTCACCGTCCACTTGAACCGGGATGGGCTCGTCGCCAAGGATTACGATACGCACGTGCCGACACTGAGCAATACGGTGGTTTTGGAGACGGTAGGCGTTTGGGACACGAGACGTCGCCACGTGGATCACACCGAAGAGGGCGACGACCTGGAAGTATTTTAGATGGGGGTACTGTAGTTTTTTTCAGGAGTACTGTATCTATCTATCTAGAGATGCAGGCAAGTTAGATGTGCAGGTAGCGCTACCAGGAGTACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACTAGTCAGATGTGCAGATAGGGGGTACTGTACCTGCACATCTAACTATTTTAAAGCYATTTAGAAAGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTAGCAAAATTTGGAAAATCCGAAAATTCCAAAAGTTCGAAAATCCAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCAAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGACCTAGAAAATCCAAAAATCTAGGTTACGGTACCTGCACATCAAAAAACTAACTAATGTCATTTTTAGCACACTTTTAGAGGTATTTCAGTCAGAATTTCACCAATTTCGAAAATTCGAAAAATTCATAAAATCATAATATAGGATTACTGTACCTCCAAAATGCGGTCATCAAAACTTTGGACCGTAAACTCCGGTCCCTCCTTATTCCGGCCCCAAAAGTTGGCACCGCCCGAGTACGATGGAATATTCAAGATTACGATTCCCTGTAGACTCGGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>301 239 111 72 68 37 37 33 28 28 28 12 6</canonical_bands>
                <polymorphic_bands>301 239 183 68 37 37 33 28 28 28 12 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTGTACCAACAAAGTTAGATGTG</pcr_primer_p1>
		<pcr_primer_p2>AATTTTGCTAAAGTACAGTAATCCT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACTAGTCAGATGTGCAGATAGGGGGTACTGTACCTGCACATCTAACTATTTTAAAGCCATTTAGAAAGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTAGCAAAATT</canonical_amplicon>
		<polymorphic_amplicon>ACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACTAGTCAGATGTGCAGATAGGGGGTACTGTACCTGCACATCTAACTATTTTAAAGCYATTTAGAAAGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTAGCAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15909</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>67725</contig_pos>
        <strand></strand>
        <context>TAGGGGGTAC[T/A]GTAWCTGCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CCATAGCTTTTCAACATTATAAACTAGTCAGATGTGCAGATAGGGGGTAC</left_flank>
        <right_flank>GTACCTGCACATCTAACTATTTTAAAGCCATTTAGAAAGTTAGATGTGCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGGTCGCATCGAAGACGGGGTTTCTGGCGAGCATCTGAGCTCGATTTTTGTGCACAATTTGCATGATTCCGGGTGGCTGGAGCCACGGTTCACCGTCCACTTGAACCGGGATGGGCTCGTCGCCAAGGATTACGATACGCACGTGCCGACACTGAGCAATACGGTGGTTTTGGAGACGGTAGGCGTTTGGGACACGAGACGTCGCCACGTGGATCACACCGAAGAGGGCGACGACCTGGAAGTATTTTAGATGGGGGTACTGTAGTTTTTTTCAGGAGTACTGTATCTATCTATCTAGAGATGCAGGCAAGTTAGATGTGCAGGTAGCGCTACCAGGAGTACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACTAGTCAGATGTGCAGATAGGGGGTACTGTACCTGCACATCTAACTATTTTAAAGCCATTTAGAAAGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTAGCAAAATTTGGAAAATCCGAAAATTCCAAAAGTTCGAAAATCCAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCAAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGACCTAGAAAATCCAAAAATCTAGGTTACGGTACCTGCACATCAAAAAACTAACTAATGTCATTTTTAGCACACTTTTAGAGGTATTTCAGTCAGAATTTCACCAATTTCGAAAATTCGAAAAATTCATAAAATCATAATATAGGATTACTGTACCTCCAAAATGCGGTCATCAAAACTTTGGACCGTAAACTCCGGTCCCTCCTTATTCCGGCCCCAAAAGTTGGCACCGCCCGAGTACGATGGAATATTC</canonical>
            <polymorphic>GAGGGTCGCATCGAAGACGGGGTTTCTGGCGAGCATCTGAGCTCGATTTTTGTGCACAATTTGCATGATTCCGGGTGGCTGGAGCCACGGTTCACCGTCCACTTGAACCGGGATGGGCTCGTCGCCAAGGATTACGATACGCACGTGCCGACACTGAGCAATACGGTGGTTTTGGAGACGGTAGGCGTTTGGGACACGAGACGTCGCCACGTGGATCACACCGAAGAGGGCGACGACCTGGAAGTATTTTAGATGGGGGTACTGTAGTTTTTTTCAGGAGTACTGTATCTATCTATCTAGAGATGCAGGCAAGTTAGATGTGCAGGTAGCGCTACCAGGAGTACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACTAGTCAGATGTGCAGATAGGGGGTACWGTACCTGCACATCTAACTATTTTAAAGCCATTTAGAAAGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTAGCAAAATTTGGAAAATCCGAAAATTCCAAAAGTTCGAAAATCCAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCAAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGACCTAGAAAATCCAAAAATCTAGGTTACGGTACCTGCACATCAAAAAACTAACTAATGTCATTTTTAGCACACTTTTAGAGGTATTTCAGTCAGAATTTCACCAATTTCGAAAATTCGAAAAATTCATAAAATCATAATATAGGATTACTGTACCTCCAAAATGCGGTCATCAAAACTTTGGACCGTAAACTCCGGTCCCTCCTTATTCCGGCCCCAAAAGTTGGCACCGCCCGAGTACGATGGAATATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTGTACCAACAAAGTTAGATGTG</pcr_primer_p1>
		<pcr_primer_p2>AATTTTGCTAAAGTACAGTAATCCT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACTAGTCAGATGTGCAGATAGGGGGTACTGTACCTGCACATCTAACTATTTTAAAGCCATTTAGAAAGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTAGCAAAATT</canonical_amplicon>
		<polymorphic_amplicon>ACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACTAGTCAGATGTGCAGATAGGGGGTACWGTACCTGCACATCTAACTATTTTAAAGCCATTTAGAAAGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTAGCAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15910</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>67601</contig_pos>
        <strand>+</strand>
        <context>GCAGATAGGG[G/T]TCATAGGGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTAGCGCTACCAGGAGTACTGTACCAACAAAGTTAGATGTGCAGATAGGG</left_flank>
        <right_flank>TCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACTCCCTGGCTCTCGTCAAAAATGGAATCTGCTCTCCAGAAGAGCCCACCAACGCCGTCGGGGTCGATGGAGCCGTCGTCCCAATGCCAGATGACGTCGCCTTTTGCTCCTCCCACTTTTTGAGGGTCGCATCGAAGACGGGGTTTCTGGCGAGCATCTGAGCTCGATTTTTGTGCACAATTTGCATGATTCCGGGTGGCTGGAGCCACGGTTCACCGTCCACTTGAACCGGGATGGGCTCGTCGCCAAGGATTACGATACGCACGTGCCGACACTGAGCAATACGGTGGTTTTGGAGACGGTAGGCGTTTGGGACACGAGACGTCGCCACGTGGATCACACCGAAGAGGGCGACGACCTGGAAGTATTTTAGATGGGGGTACTGTAGTTTTTTTCAGGAGTACTGTATCTATCTATCTAGAGATGCAGGCAAGTTAGATGTGCAGGTAGCGCTACCAGGAGTACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACTAGTCAGATGTGCAGATAGGGGGTACTGTACCTGCACATCTAACTATTTTAAAGCCATTTAGAAAGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTAGCAAAATTTGGAAAATCCGAAAATTCCAAAAGTTCGAAAATCCAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCAAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGACCTAGAAAATCCAAAAATCTAGGTTACGGTACCTGCACATCAAAAAACTAACTAATGTCATTTTTAGCACACTTTTAGAGGTATTTCAGTCAGAATTTCACCAATTTCGAAAATTCGAAAAATTCA</canonical>
            <polymorphic>AAAACTCCCTGGCTCTCGTCAAAAATGGAATCTGCTCTCCAGAAGAGCCCACCAACGCCGTCGGGGTCGATGGAGCCGTCGTCCCAATGCCAGATGACGTCGCCTTTTGCTCCTCCCACTTTTTGAGGGTCGCATCGAAGACGGGGTTTCTGGCGAGCATCTGAGCTCGATTTTTGTGCACAATTTGCATGATTCCGGGTGGCTGGAGCCACGGTTCACCGTCCACTTGAACCGGGATGGGCTCGTCGCCAAGGATTACGATACGCACGTGCCGACACTGAGCAATACGGTGGTTTTGGAGACGGTAGGCGTTTGGGACACGAGACGTCGCCACGTGGATCACACCGAAGAGGGCGACGACCTGGAAGTATTTTAGATGGGGGTACTGTAGTTTTTTTCAGGAGTACTGTATCTATCTATCTAGAGATGCAGGCAAGTTAGATGTGCAGGTAGCGCTACCAGGAGTACTGTACCAACAAAGTTAGATGTGCAGATAGGGKTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACTAGTCAGATGTGCAGATAGGGGGTACTGTACCTGCACATCTAACTATTTTAAAGCCATTTAGAAAGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTAGCAAAATTTGGAAAATCCGAAAATTCCAAAAGTTCGAAAATCCAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCAAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGACCTAGAAAATCCAAAAATCTAGGTTACGGTACCTGCACATCAAAAAACTAACTAATGTCATTTTTAGCACACTTTTAGAGGTATTTCAGTCAGAATTTCACCAATTTCGAAAATTCGAAAAATTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACGACCTGGAAGTATTTTAGAT</pcr_primer_p1>
		<pcr_primer_p2>AGTTTATAATGTTGAAAAGCTATGG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GACGACCTGGAAGTATTTTAGATGGGGGTACTGTAGTTTTTTTCAGGAGTACTGTATCTATCTATCTAGAGATGCAGGCAAGTTAGATGTGCAGGTAGCGCTACCAGGAGTACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACT</canonical_amplicon>
		<polymorphic_amplicon>GACGACCTGGAAGTATTTTAGATGGGGGTACTGTAGTTTTTTTCAGGAGTACTGTATCTATCTATCTAGAGATGCAGGCAAGTTAGATGTGCAGGTAGCGCTACCAGGAGTACTGTACCAACAAAGTTAGATGTGCAGATAGGGKTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15911</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>67531</contig_pos>
        <strand>+</strand>
        <context>TCTAGAGATG[C/T]AGGCAAGTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGGTACTGTAGTTTTTTTCAGGAGTACTGTATCTATCTATCTAGAGATG</left_flank>
        <right_flank>AGGCAAGTTAGATGTGCAGGTAGCGCTACCAGGAGTACTGTACCAACAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCATCATCCAGGGACCCCAGGAACGCCGAAGACACTCCAAGCCGAGCGATCTCCCCCTCGATGAGCCTCAAAAACTCCCTGGCTCTCGTCAAAAATGGAATCTGCTCTCCAGAAGAGCCCACCAACGCCGTCGGGGTCGATGGAGCCGTCGTCCCAATGCCAGATGACGTCGCCTTTTGCTCCTCCCACTTTTTGAGGGTCGCATCGAAGACGGGGTTTCTGGCGAGCATCTGAGCTCGATTTTTGTGCACAATTTGCATGATTCCGGGTGGCTGGAGCCACGGTTCACCGTCCACTTGAACCGGGATGGGCTCGTCGCCAAGGATTACGATACGCACGTGCCGACACTGAGCAATACGGTGGTTTTGGAGACGGTAGGCGTTTGGGACACGAGACGTCGCCACGTGGATCACACCGAAGAGGGCGACGACCTGGAAGTATTTTAGATGGGGGTACTGTAGTTTTTTTCAGGAGTACTGTATCTATCTATCTAGAGATGCAGGCAAGTTAGATGTGCAGGTAGCGCTACCAGGAGTACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACTAGTCAGATGTGCAGATAGGGGGTACTGTACCTGCACATCTAACTATTTTAAAGCCATTTAGAAAGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTAGCAAAATTTGGAAAATCCGAAAATTCCAAAAGTTCGAAAATCCAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCAAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGACCTAGAAAATCCAAAAATCTAGGTTACGGTACCTGCACATCAAAAAACTAACTAAT</canonical>
            <polymorphic>GCATCATCCAGGGACCCCAGGAACGCCGAAGACACTCCAAGCCGAGCGATCTCCCCCTCGATGAGCCTCAAAAACTCCCTGGCTCTCGTCAAAAATGGAATCTGCTCTCCAGAAGAGCCCACCAACGCCGTCGGGGTCGATGGAGCCGTCGTCCCAATGCCAGATGACGTCGCCTTTTGCTCCTCCCACTTTTTGAGGGTCGCATCGAAGACGGGGTTTCTGGCGAGCATCTGAGCTCGATTTTTGTGCACAATTTGCATGATTCCGGGTGGCTGGAGCCACGGTTCACCGTCCACTTGAACCGGGATGGGCTCGTCGCCAAGGATTACGATACGCACGTGCCGACACTGAGCAATACGGTGGTTTTGGAGACGGTAGGCGTTTGGGACACGAGACGTCGCCACGTGGATCACACCGAAGAGGGCGACGACCTGGAAGTATTTTAGATGGGGGTACTGTAGTTTTTTTCAGGAGTACTGTATCTATCTATCTAGAGATGYAGGCAAGTTAGATGTGCAGGTAGCGCTACCAGGAGTACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACTAGTCAGATGTGCAGATAGGGGGTACTGTACCTGCACATCTAACTATTTTAAAGCCATTTAGAAAGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTAGCAAAATTTGGAAAATCCGAAAATTCCAAAAGTTCGAAAATCCAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCAAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGACCTAGAAAATCCAAAAATCTAGGTTACGGTACCTGCACATCAAAAAACTAACTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 276 225</canonical_bands>
                <polymorphic_bands>775 225</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>248 242 237 49 44 41 39 31 22 21 17 9</canonical_bands>
                <polymorphic_bands>259 248 237 49 44 41 39 31 22 21 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACGACCTGGAAGTATTTTAGAT</pcr_primer_p1>
		<pcr_primer_p2>AGTTTATAATGTTGAAAAGCTATGG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GACGACCTGGAAGTATTTTAGATGGGGGTACTGTAGTTTTTTTCAGGAGTACTGTATCTATCTATCTAGAGATGCAGGCAAGTTAGATGTGCAGGTAGCGCTACCAGGAGTACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACT</canonical_amplicon>
		<polymorphic_amplicon>GACGACCTGGAAGTATTTTAGATGGGGGTACTGTAGTTTTTTTCAGGAGTACTGTATCTATCTATCTAGAGATGYAGGCAAGTTAGATGTGCAGGTAGCGCTACCAGGAGTACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15936</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>79125</contig_pos>
        <strand></strand>
        <context>AATTTTCRGC[T/C]ATTTTYAGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGC</left_flank>
        <right_flank>ATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAATCCGAAAAATTAGGTCATGGCCTAGAAAATCCAAAAATTAGTTCATGACCTAGAAAACCCAAAAATTAGGTCATGGCCTAGAAAATCCAAAGAACTAGGTCATGACCTAGAAAATCCGAAAAATCGATTTTCCACTTTTTCTGGGTCATTTTTTGCCAATTTTTCAGATTTTTAGGTCATTTTTGGGTCAATTTTCTTGATTTTTTGTGTCAAATTCTCAATTTTTCACACAAAAAACTCACTTTAGAATGCAAATTGAGCCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAATCAGTGGGCTGCCACCGGGAAGTCCGTCGCCTCCTGGAAATTTGAAATTTTCAGATTTTTTGAATTTTTGAAAAAAAAAATTTTTTTTTTCAAAAAATTTGAATTTTCGAGTTTTTCCTTGAGAACTGGACATTTCAAATGTATCCCATCAAATTGGAATTTGAAAATGCTTTAAAATGAGCTCAAACTCGACTAGGCTCCGCCCATTTTGAAATTTCACCCGGACACGTGACGCCCGACCGCGACGCACGACTGGAACATCAAAGTGGGCGGAGCTTAGTCGAGTTTGGGCTCATTTCGAAGCTTTCATTAAGATAAGTAAGAAAAACACACTAATTTT</canonical>
            <polymorphic>AAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAATCCGAAAAATTAGGTCATGGCCTAGAAAATCCAAAAATTAGTTCATGACCTAGAAAACCCAAAAATTAGGTCATGGCCTAGAAAATCCAAAGAACTAGGTCATGACCTAGAAAATCCGAAAAATCGATTTTCCACTTTTTCTGGGTCATTTTTTGCCAATTTTTCAGATTTTTAGGTCATTTTTGGGTCAATTTTCTTGATTTTTTGTGTCAAATTCTCAATTTTTCACACAAAAAACTCACTTTAGAATGCAAATTGAGCCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCYATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAATCAGTGGGCTGCCACCGGGAAGTCCGTCGCCTCCTGGAAATTTGAAATTTTCAGATTTTTTGAATTTTTGAAAAAAAAAATTTTTTTTTTCAAAAAATTTGAATTTTCGAGTTTTTCCTTGAGAACTGGACATTTCAAATGTATCCCATCAAATTGGAATTTGAAAATGCTTTAAAATGAGCTCAAACTCGACTAGGCTCCGCCCATTTTGAAATTTCACCCGGACACGTGACGCCCGACCGCGACGCACGACTGGAACATCAAAGTGGGCGGAGCTTAGTCGAGTTTGGGCTCATTTCGAAGCTTTCATTAAGATAAGTAAGAAAAACACACTAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>184 173 155 136 78 56 37 29 29 29 16 16 16 13 12 11 10</canonical_bands>
                <polymorphic_bands>184 173 165 136 78 56 37 29 29 29 16 16 16 13 12 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTTGCGAGAAGAATGTTAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTACTAATCAACGCGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAAT</canonical_amplicon>
		<polymorphic_amplicon>GAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCYATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15937</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>79122</contig_pos>
        <strand></strand>
        <context>ttCAATTTTC[G/A]GCYATTTTYA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTC</left_flank>
        <right_flank>GCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAATCCGAAAAATTAGGTCATGGCCTAGAAAATCCAAAAATTAGTTCATGACCTAGAAAACCCAAAAATTAGGTCATGGCCTAGAAAATCCAAAGAACTAGGTCATGACCTAGAAAATCCGAAAAATCGATTTTCCACTTTTTCTGGGTCATTTTTTGCCAATTTTTCAGATTTTTAGGTCATTTTTGGGTCAATTTTCTTGATTTTTTGTGTCAAATTCTCAATTTTTCACACAAAAAACTCACTTTAGAATGCAAATTGAGCCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAATCAGTGGGCTGCCACCGGGAAGTCCGTCGCCTCCTGGAAATTTGAAATTTTCAGATTTTTTGAATTTTTGAAAAAAAAAATTTTTTTTTTCAAAAAATTTGAATTTTCGAGTTTTTCCTTGAGAACTGGACATTTCAAATGTATCCCATCAAATTGGAATTTGAAAATGCTTTAAAATGAGCTCAAACTCGACTAGGCTCCGCCCATTTTGAAATTTCACCCGGACACGTGACGCCCGACCGCGACGCACGACTGGAACATCAAAGTGGGCGGAGCTTAGTCGAGTTTGGGCTCATTTCGAAGCTTTCATTAAGATAAGTAAGAAAAACACACTAAT</canonical>
            <polymorphic>CCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAATCCGAAAAATTAGGTCATGGCCTAGAAAATCCAAAAATTAGTTCATGACCTAGAAAACCCAAAAATTAGGTCATGGCCTAGAAAATCCAAAGAACTAGGTCATGACCTAGAAAATCCGAAAAATCGATTTTCCACTTTTTCTGGGTCATTTTTTGCCAATTTTTCAGATTTTTAGGTCATTTTTGGGTCAATTTTCTTGATTTTTTGTGTCAAATTCTCAATTTTTCACACAAAAAACTCACTTTAGAATGCAAATTGAGCCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCRGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAATCAGTGGGCTGCCACCGGGAAGTCCGTCGCCTCCTGGAAATTTGAAATTTTCAGATTTTTTGAATTTTTGAAAAAAAAAATTTTTTTTTTCAAAAAATTTGAATTTTCGAGTTTTTCCTTGAGAACTGGACATTTCAAATGTATCCCATCAAATTGGAATTTGAAAATGCTTTAAAATGAGCTCAAACTCGACTAGGCTCCGCCCATTTTGAAATTTCACCCGGACACGTGACGCCCGACCGCGACGCACGACTGGAACATCAAAGTGGGCGGAGCTTAGTCGAGTTTGGGCTCATTTCGAAGCTTTCATTAAGATAAGTAAGAAAAACACACTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>184 173 155 136 78 56 34 29 29 29 19 16 16 13 12 11 10</canonical_bands>
                <polymorphic_bands>184 173 165 136 78 56 34 29 29 29 19 16 16 13 12 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTTGCGAGAAGAATGTTAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTACTAATCAACGCGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAAT</canonical_amplicon>
		<polymorphic_amplicon>GAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCRGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15938</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>79436</contig_pos>
        <strand></strand>
        <context>GTATCCCatc[A/G]aattggaatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATTTTCGAGTTTTTCCTTGAGAACTGGACATTTCAAATGTATCCCATC</left_flank>
        <right_flank>AATTGGAATTTGAAAATGCTTTAAAATGAGCTCAAACTCGACTAGGCTCC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACAAAAAACTCACTTTAGAATGCAAATTGAGCCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAATCAGTGGGCTGCCACCGGGAAGTCCGTCGCCTCCTGGAAATTTGAAATTTTCAGATTTTTTGAATTTTTGAAAAAAAAAATTTTTTTTTTCAAAAAATTTGAATTTTCGAGTTTTTCCTTGAGAACTGGACATTTCAAATGTATCCCATCAAATTGGAATTTGAAAATGCTTTAAAATGAGCTCAAACTCGACTAGGCTCCGCCCATTTTGAAATTTCACCCGGACACGTGACGCCCGACCGCGACGCACGACTGGAACATCAAAGTGGGCGGAGCTTAGTCGAGTTTGGGCTCATTTCGAAGCTTTCATTAAGATAAGTAAGAAAAACACACTAATTTTTGAAAAAAAAAACTGATTTTCAGCCAAAAAAAAGCTGAAAAATCAAAAATTTCAAGAAAAAAATTTTCAGCCAATTTTCAGTTTTTTTTTCCCGATTTTTTCGCCATTGCTCATCCTTCACCTACCGTATGCCTCCTCTCTCAACAACGCCGTTCCATTGGGACTGACCGATTTCAGTGCCAACGGAGAAATGACTGAAAGTGCCGAATGACCCAAACTACACGAACGGGCGAGCTGAGCAATGCACGTGTCATGGACACAGCAGCCACACCAGATGCAACGATAATCCTGGAAATTTGAAAAAAAGTGAA</canonical>
            <polymorphic>CACAAAAAACTCACTTTAGAATGCAAATTGAGCCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAATCAGTGGGCTGCCACCGGGAAGTCCGTCGCCTCCTGGAAATTTGAAATTTTCAGATTTTTTGAATTTTTGAAAAAAAAAATTTTTTTTTTCAAAAAATTTGAATTTTCGAGTTTTTCCTTGAGAACTGGACATTTCAAATGTATCCCATCRAATTGGAATTTGAAAATGCTTTAAAATGAGCTCAAACTCGACTAGGCTCCGCCCATTTTGAAATTTCACCCGGACACGTGACGCCCGACCGCGACGCACGACTGGAACATCAAAGTGGGCGGAGCTTAGTCGAGTTTGGGCTCATTTCGAAGCTTTCATTAAGATAAGTAAGAAAAACACACTAATTTTTGAAAAAAAAAACTGATTTTCAGCCAAAAAAAAGCTGAAAAATCAAAAATTTCAAGAAAAAAATTTTCAGCCAATTTTCAGTTTTTTTTTCCCGATTTTTTCGCCATTGCTCATCCTTCACCTACCGTATGCCTCCTCTCTCAACAACGCCGTTCCATTGGGACTGACCGATTTCAGTGCCAACGGAGAAATGACTGAAAGTGCCGAATGACCCAAACTACACGAACGGGCGAGCTGAGCAATGCACGTGTCATGGACACAGCAGCCACACCAGATGCAACGATAATCCTGGAAATTTGAAAAAAAGTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTCGCGTTGATTAGTACA</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAAATTAGTGTGTTTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>366</pcr_amplicon_size>
		<canonical_amplicon>GATTTCGCGTTGATTAGTACAATCAGTGGGCTGCCACCGGGAAGTCCGTCGCCTCCTGGAAATTTGAAATTTTCAGATTTTTTGAATTTTTGAAAAAAAAAATTTTTTTTTTCAAAAAATTTGAATTTTCGAGTTTTTCCTTGAGAACTGGACATTTCAAATGTATCCCATCAAATTGGAATTTGAAAATGCTTTAAAATGAGCTCAAACTCGACTAGGCTCCGCCCATTTTGAAATTTCACCCGGACACGTGACGCCCGACCGCGACGCACGACTGGAACATCAAAGTGGGCGGAGCTTAGTCGAGTTTGGGCTCATTTCGAAGCTTTCATTAAGATAAGTAAGAAAAACACACTAATTTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTCGCGTTGATTAGTACAATCAGTGGGCTGCCACCGGGAAGTCCGTCGCCTCCTGGAAATTTGAAATTTTCAGATTTTTTGAATTTTTGAAAAAAAAAATTTTTTTTTTCAAAAAATTTGAATTTTCGAGTTTTTCCTTGAGAACTGGACATTTCAAATGTATCCCATCRAATTGGAATTTGAAAATGCTTTAAAATGAGCTCAAACTCGACTAGGCTCCGCCCATTTTGAAATTTCACCCGGACACGTGACGCCCGACCGCGACGCACGACTGGAACATCAAAGTGGGCGGAGCTTAGTCGAGTTTGGGCTCATTTCGAAGCTTTCATTAAGATAAGTAAGAAAAACACACTAATTTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15940</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>161116</contig_pos>
        <strand>+</strand>
        <context>ATTCTGATGA[A/C]TATTCGGATT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGAAAACAAGCCGAGGAGAAATTGGCAGTGATTGATTATGATTCTGATGA</left_flank>
        <right_flank>TATTCGGATTATGTGGAAGCATTTTTGAAGGAGAGAAAGAAACATGAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGATTGCTTTCCTAGAGAAATACACAGCCTGAATGACAACATTTTTGGTACAGAAAAATGCAGATTTTTTGAAACAGTAATTTTTGGTTTCGAAATCTGGAATCTGGAATCTGGAATTTGGAATCTGGAATTTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATTTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCCAAAAAATATCATGTTCAGTCGTCACGGATAGTTGGTCGGGTCTTCTGAAAATGTTCCGAAAACAAGCCGAGGAGAAATTGGCAGTGATTGATTATGATTCTGATGACTATTCGGATTATGTGGAAGCATTTTTGAAGGAGAGAAAGAAACATGAAAATGAGGAAGGGTTCGGAGGATTTGAGTGAGTTTTTTAAAAGCGATAACGTTCAGATAACGAGATAATTGACATTGTTTAATAACTCAAATTAGTTTGATTATTCGCAAATCAAATTTAGATTGGGAACACTGAGAATGTATAACTGGAAAAACATTGATTTTTTGAAACAGTAAAAATGACTACGGTACTCACAACAGAGCAAATATAGCTGTAACAAAGAATGATGGAAACCATTGAGAATTTGGAAAATGCACTAACTAGGGAGGCCCCAACTCGGGTGTGGCAAGGTGACCTATATCATCTGAAAGCTGACATTTTCCTGATTCCAAATCTGTTTTCAAAAAGTGCATTGTCGCGGTAGTTTTCGAGGAAATTGTGTCAAAAGTTTCGGATAATGATGTGGATTTTTAATCTCATTTTCCTTCCTCACGTATATAAGTTTTGAAGTGT</canonical>
            <polymorphic>TTGATTGCTTTCCTAGAGAAATACACAGCCTGAATGACAACATTTTTGGTACAGAAAAATGCAGATTTTTTGAAACAGTAATTTTTGGTTTCGAAATCTGGAATCTGGAATCTGGAATTTGGAATCTGGAATTTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATTTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCCAAAAAATATCATGTTCAGTCGTCACGGATAGTTGGTCGGGTCTTCTGAAAATGTTCCGAAAACAAGCCGAGGAGAAATTGGCAGTGATTGATTATGATTCTGATGAMTATTCGGATTATGTGGAAGCATTTTTGAAGGAGAGAAAGAAACATGAAAATGAGGAAGGGTTCGGAGGATTTGAGTGAGTTTTTTAAAAGCGATAACGTTCAGATAACGAGATAATTGACATTGTTTAATAACTCAAATTAGTTTGATTATTCGCAAATCAAATTTAGATTGGGAACACTGAGAATGTATAACTGGAAAAACATTGATTTTTTGAAACAGTAAAAATGACTACGGTACTCACAACAGAGCAAATATAGCTGTAACAAAGAATGATGGAAACCATTGAGAATTTGGAAAATGCACTAACTAGGGAGGCCCCAACTCGGGTGTGGCAAGGTGACCTATATCATCTGAAAGCTGACATTTTCCTGATTCCAAATCTGTTTTCAAAAAGTGCATTGTCGCGGTAGTTTTCGAGGAAATTGTGTCAAAAGTTTCGGATAATGATGTGGATTTTTAATCTCATTTTCCTTCCTCACGTATATAAGTTTTGAAGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATCTGGAATCTGGAATCTG</pcr_primer_p1>
		<pcr_primer_p2>TTATCTGAACGTTATCGCTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATTTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCCAAAAAATATCATGTTCAGTCGTCACGGATAGTTGGTCGGGTCTTCTGAAAATGTTCCGAAAACAAGCCGAGGAGAAATTGGCAGTGATTGATTATGATTCTGATGACTATTCGGATTATGTGGAAGCATTTTTGAAGGAGAGAAAGAAACATGAAAATGAGGAAGGGTTCGGAGGATTTGAGTGAGTTTTTTAAAAGCGATAACGTTCAGATAA</canonical_amplicon>
		<polymorphic_amplicon>GAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATTTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCCAAAAAATATCATGTTCAGTCGTCACGGATAGTTGGTCGGGTCTTCTGAAAATGTTCCGAAAACAAGCCGAGGAGAAATTGGCAGTGATTGATTATGATTCTGATGAMTATTCGGATTATGTGGAAGCATTTTTGAAGGAGAGAAAGAAACATGAAAATGAGGAAGGGTTCGGAGGATTTGAGTGAGTTTTTTAAAAGCGATAACGTTCAGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15941</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>161178</contig_pos>
        <strand>+</strand>
        <context>GAGGAAGGGT[A/T]CGGAGGATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTGGAAGCATTTTTGAAGGAGAGAAAGAAACATGAAAATGAGGAAGGGT</left_flank>
        <right_flank>CGGAGGATTTGAGTGAGTTTTTTAAAAGCGATAACGTTCAGATAACGAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATTTTTTGAAACAGTAATTTTTGGTTTCGAAATCTGGAATCTGGAATCTGGAATTTGGAATCTGGAATTTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATTTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCCAAAAAATATCATGTTCAGTCGTCACGGATAGTTGGTCGGGTCTTCTGAAAATGTTCCGAAAACAAGCCGAGGAGAAATTGGCAGTGATTGATTATGATTCTGATGACTATTCGGATTATGTGGAAGCATTTTTGAAGGAGAGAAAGAAACATGAAAATGAGGAAGGGTTCGGAGGATTTGAGTGAGTTTTTTAAAAGCGATAACGTTCAGATAACGAGATAATTGACATTGTTTAATAACTCAAATTAGTTTGATTATTCGCAAATCAAATTTAGATTGGGAACACTGAGAATGTATAACTGGAAAAACATTGATTTTTTGAAACAGTAAAAATGACTACGGTACTCACAACAGAGCAAATATAGCTGTAACAAAGAATGATGGAAACCATTGAGAATTTGGAAAATGCACTAACTAGGGAGGCCCCAACTCGGGTGTGGCAAGGTGACCTATATCATCTGAAAGCTGACATTTTCCTGATTCCAAATCTGTTTTCAAAAAGTGCATTGTCGCGGTAGTTTTCGAGGAAATTGTGTCAAAAGTTTCGGATAATGATGTGGATTTTTAATCTCATTTTCCTTCCTCACGTATATAAGTTTTGAAGTGTTGAAAGAATGCGGAAGCGAATGCGGAATTGTTCGGTTTTTGCGGTGACTGTATCTGAATTGT</canonical>
            <polymorphic>AGATTTTTTGAAACAGTAATTTTTGGTTTCGAAATCTGGAATCTGGAATCTGGAATTTGGAATCTGGAATTTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATTTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCCAAAAAATATCATGTTCAGTCGTCACGGATAGTTGGTCGGGTCTTCTGAAAATGTTCCGAAAACAAGCCGAGGAGAAATTGGCAGTGATTGATTATGATTCTGATGACTATTCGGATTATGTGGAAGCATTTTTGAAGGAGAGAAAGAAACATGAAAATGAGGAAGGGTWCGGAGGATTTGAGTGAGTTTTTTAAAAGCGATAACGTTCAGATAACGAGATAATTGACATTGTTTAATAACTCAAATTAGTTTGATTATTCGCAAATCAAATTTAGATTGGGAACACTGAGAATGTATAACTGGAAAAACATTGATTTTTTGAAACAGTAAAAATGACTACGGTACTCACAACAGAGCAAATATAGCTGTAACAAAGAATGATGGAAACCATTGAGAATTTGGAAAATGCACTAACTAGGGAGGCCCCAACTCGGGTGTGGCAAGGTGACCTATATCATCTGAAAGCTGACATTTTCCTGATTCCAAATCTGTTTTCAAAAAGTGCATTGTCGCGGTAGTTTTCGAGGAAATTGTGTCAAAAGTTTCGGATAATGATGTGGATTTTTAATCTCATTTTCCTTCCTCACGTATATAAGTTTTGAAGTGTTGAAAGAATGCGGAAGCGAATGCGGAATTGTTCGGTTTTTGCGGTGACTGTATCTGAATTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>377 251 115 87 58 44 38 12 11 7</canonical_bands>
                <polymorphic_bands>377 251 115 96 87 44 12 11 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGTGGAAGCATTTTTGAAG</pcr_primer_p1>
		<pcr_primer_p2>GCTATATTTGCTCTGTTGTGAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATGTGGAAGCATTTTTGAAGGAGAGAAAGAAACATGAAAATGAGGAAGGGTTCGGAGGATTTGAGTGAGTTTTTTAAAAGCGATAACGTTCAGATAACGAGATAATTGACATTGTTTAATAACTCAAATTAGTTTGATTATTCGCAAATCAAATTTAGATTGGGAACACTGAGAATGTATAACTGGAAAAACATTGATTTTTTGAAACAGTAAAAATGACTACGGTACTCACAACAGAGCAAATATAGC</canonical_amplicon>
		<polymorphic_amplicon>TATGTGGAAGCATTTTTGAAGGAGAGAAAGAAACATGAAAATGAGGAAGGGTWCGGAGGATTTGAGTGAGTTTTTTAAAAGCGATAACGTTCAGATAACGAGATAATTGACATTGTTTAATAACTCAAATTAGTTTGATTATTCGCAAATCAAATTTAGATTGGGAACACTGAGAATGTATAACTGGAAAAACATTGATTTTTTGAAACAGTAAAAATGACTACGGTACTCACAACAGAGCAAATATAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15942</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>161326</contig_pos>
        <strand></strand>
        <context>AACATTGATT[T/A]WTTGAAACAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CAAATTTAGATTGGGAACACTGAGAATGTATAACTGGAAAAACATTGATT</left_flank>
        <right_flank>TTTGAAACAGTAAAAATGACTACGGTACTCACAACAGAGCAAATATAGCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATTTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCCAAAAAATATCATGTTCAGTCGTCACGGATAGTTGGTCGGGTCTTCTGAAAATGTTCCGAAAACAAGCCGAGGAGAAATTGGCAGTGATTGATTATGATTCTGATGACTATTCGGATTATGTGGAAGCATTTTTGAAGGAGAGAAAGAAACATGAAAATGAGGAAGGGTTCGGAGGATTTGAGTGAGTTTTTTAAAAGCGATAACGTTCAGATAACGAGATAATTGACATTGTTTAATAACTCAAATTAGTTTGATTATTCGCAAATCAAATTTAGATTGGGAACACTGAGAATGTATAACTGGAAAAACATTGATTTTTTGAAACAGTAAAAATGACTACGGTACTCACAACAGAGCAAATATAGCTGTAACAAAGAATGATGGAAACCATTGAGAATTTGGAAAATGCACTAACTAGGGAGGCCCCAACTCGGGTGTGGCAAGGTGACCTATATCATCTGAAAGCTGACATTTTCCTGATTCCAAATCTGTTTTCAAAAAGTGCATTGTCGCGGTAGTTTTCGAGGAAATTGTGTCAAAAGTTTCGGATAATGATGTGGATTTTTAATCTCATTTTCCTTCCTCACGTATATAAGTTTTGAAGTGTTGAAAGAATGCGGAAGCGAATGCGGAATTGTTCGGTTTTTGCGGTGACTGTATCTGAATTGTAGAAATGGACATAGGTTAACGAATCTCGTGAAACAATTTTTTTCACTGATTCTCTTTGTTTGGAACTAATTCTAGCACATTACATTTTTTTTCGAAAATTGAAAAAAAAATGACAAGGGGGTACCCCATGGCGATTTTTTCAAAATTA</canonical>
            <polymorphic>TGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATTTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCCAAAAAATATCATGTTCAGTCGTCACGGATAGTTGGTCGGGTCTTCTGAAAATGTTCCGAAAACAAGCCGAGGAGAAATTGGCAGTGATTGATTATGATTCTGATGACTATTCGGATTATGTGGAAGCATTTTTGAAGGAGAGAAAGAAACATGAAAATGAGGAAGGGTTCGGAGGATTTGAGTGAGTTTTTTAAAAGCGATAACGTTCAGATAACGAGATAATTGACATTGTTTAATAACTCAAATTAGTTTGATTATTCGCAAATCAAATTTAGATTGGGAACACTGAGAATGTATAACTGGAAAAACATTGATTWTTTGAAACAGTAAAAATGACTACGGTACTCACAACAGAGCAAATATAGCTGTAACAAAGAATGATGGAAACCATTGAGAATTTGGAAAATGCACTAACTAGGGAGGCCCCAACTCGGGTGTGGCAAGGTGACCTATATCATCTGAAAGCTGACATTTTCCTGATTCCAAATCTGTTTTCAAAAAGTGCATTGTCGCGGTAGTTTTCGAGGAAATTGTGTCAAAAGTTTCGGATAATGATGTGGATTTTTAATCTCATTTTCCTTCCTCACGTATATAAGTTTTGAAGTGTTGAAAGAATGCGGAAGCGAATGCGGAATTGTTCGGTTTTTGCGGTGACTGTATCTGAATTGTAGAAATGGACATAGGTTAACGAATCTCGTGAAACAATTTTTTTCACTGATTCTCTTTGTTTGGAACTAATTCTAGCACATTACATTTTTTTTCGAAAATTGAAAAAAAAATGACAAGGGGGTACCCCATGGCGATTTTTTCAAAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTGAAGGAGAGAAAGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTGTTACAGCTATATTTGCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTGAAGGAGAGAAAGAAACATGAAAATGAGGAAGGGTTCGGAGGATTTGAGTGAGTTTTTTAAAAGCGATAACGTTCAGATAACGAGATAATTGACATTGTTTAATAACTCAAATTAGTTTGATTATTCGCAAATCAAATTTAGATTGGGAACACTGAGAATGTATAACTGGAAAAACATTGATTTTTTGAAACAGTAAAAATGACTACGGTACTCACAACAGAGCAAATATAGCTGTAACAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTGAAGGAGAGAAAGAAACATGAAAATGAGGAAGGGTTCGGAGGATTTGAGTGAGTTTTTTAAAAGCGATAACGTTCAGATAACGAGATAATTGACATTGTTTAATAACTCAAATTAGTTTGATTATTCGCAAATCAAATTTAGATTGGGAACACTGAGAATGTATAACTGGAAAAACATTGATTWTTTGAAACAGTAAAAATGACTACGGTACTCACAACAGAGCAAATATAGCTGTAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15943</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>163757</contig_pos>
        <strand>+</strand>
        <context>AGTGTGGTGT[G/T]ACGATGAAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATTGCATGCGGATAATTTGAATCCAAGCATTGAGAAAGAGTGTGGTGT</left_flank>
        <right_flank>ACGATGAAGGCCAAGAATTTCAGAGTTGTTATGAAGGAGAGATATTAATT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACATCTTCAAAGGTAATTATGTACACATGTAAGAAACACGATTTTCAGGCCCTTCTCAAATGTCTAAGACCAAAAAGTTACGGTTTCCAGGAATCCCAACGTCTTGCAAACCTGCTCCCAATGAATATCTCTCGTACCACTGCATGTGACATGGAAATCGGTGGCTACCGTATTCCCAAAGATACAGTAATCACTCCACAAATTTGTACAGTACTCTATGATCCGGAGGTGCCCTAACTTCTCTAGGCTACAGTAATCAAAGTGATTTAGGTCTTCCCAGAACCCTATGAATTCCGTCCATCTCGATTTTTGGATTCTTTGGGAAATTTGAAAAAAGTCGAAGAACTCGTGCCATTTTCAATTGGAAAACGACAATGCCTGGGTGAAGGATTGGCTCGAATGGAATTATTTCTATTTTTTGCCAATTTATTCAACAAATTTGATATTAAATTGCATGCGGATAATTTGAATCCAAGCATTGAGAAAGAGTGTGGTGTGACGATGAAGGCCAAGAATTTCAGAGTTGTTATGAAGGAGAGATATTAATTTTTTTTTTCCTTAATTTTTACTGTTTTGGGTTTATTTGGTCTTGAAAACTTTTTTGTGAATGAAATCTTTTTTTGTGAATGAAAATTTTTGCGAAAAAAATCAATGATATAAATTGAAGAGTTTTTTTCGTTTAAAGAAAATATTGCAAAAAATCACTGTTTCAAAATCTGTTAAACCCTTTTTTTGGATTAGACAAAAATGTTGAACCATCGCATTAAAAAAGGTCAGGAGGAATGTAAACGCCCTCCCCTCCTCTCTCCCTCGTCCTCCCATGTGGTCTAGTGGTTAGGATTCGTGGTTTTCACCCACGCGGCCCGGGTTCGATTCCCGGCATGGGAAGTTTCTTTTTTAGACTTTTAGCTAATTGTGAGATGCTTTTGGCTTTAAATTTGGCATTGAAAAATGGTATTCAGTTTTTTGCATAGTAGCAAGAGTTATCAGCTGGAAAA</canonical>
            <polymorphic>AAACATCTTCAAAGGTAATTATGTACACATGTAAGAAACACGATTTTCAGGCCCTTCTCAAATGTCTAAGACCAAAAAGTTACGGTTTCCAGGAATCCCAACGTCTTGCAAACCTGCTCCCAATGAATATCTCTCGTACCACTGCATGTGACATGGAAATCGGTGGCTACCGTATTCCCAAAGATACAGTAATCACTCCACAAATTTGTACAGTACTCTATGATCCGGAGGTGCCCTAACTTCTCTAGGCTACAGTAATCAAAGTGATTTAGGTCTTCCCAGAACCCTATGAATTCCGTCCATCTCGATTTTTGGATTCTTTGGGAAATTTGAAAAAAGTCGAAGAACTCGTGCCATTTTCAATTGGAAAACGACAATGCCTGGGTGAAGGATTGGCTCGAATGGAATTATTTCTATTTTTTGCCAATTTATTCAACAAATTTGATATTAAATTGCATGCGGATAATTTGAATCCAAGCATTGAGAAAGAGTGTGGTGTKACGATGAAGGCCAAGAATTTCAGAGTTGTTATGAAGGAGAGATATTAATTTTTTTTTTCCTTAATTTTTACTGTTTTGGGTTTATTTGGTCTTGAAAACTTTTTTGTGAATGAAATCTTTTTTTGTGAATGAAAATTTTTGCGAAAAAAATCAATGATATAAATTGAAGAGTTTTTTTCGTTTAAAGAAAATATTGCAAAAAATCACTGTTTCAAAATCTGTTAAACCCTTTTTTTGGATTAGACAAAAATGTTGAACCATCGCATTAAAAAAGGTCAGGAGGAATGTAAACGCCCTCCCCTCCTCTCTCCCTCGTCCTCCCATGTGGTCTAGTGGTTAGGATTCGTGGTTTTCACCCACGCGGCCCGGGTTCGATTCCCGGCATGGGAAGTTTCTTTTTTAGACTTTTAGCTAATTGTGAGATGCTTTTGGCTTTAAATTTGGCATTGAAAAATGGTATTCAGTTTTTTGCATAGTAGCAAGAGTTATCAGCTGGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>121 108 106 101 87 80 79 61 34 33 33 30 27 19 15 13 13 9 8 7 5 4 3 2 2</canonical_bands>
                <polymorphic_bands>121 110 106 101 87 80 79 61 34 33 33 30 27 19 15 13 13 9 8 7 5 4 3 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>503 350 147</canonical_bands>
                <polymorphic_bands>853 147</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAATTGGAAAACGACAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGTTTTCAAGACCAAATAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTCAATTGGAAAACGACAATGCCTGGGTGAAGGATTGGCTCGAATGGAATTATTTCTATTTTTTGCCAATTTATTCAACAAATTTGATATTAAATTGCATGCGGATAATTTGAATCCAAGCATTGAGAAAGAGTGTGGTGTGACGATGAAGGCCAAGAATTTCAGAGTTGTTATGAAGGAGAGATATTAATTTTTTTTTTCCTTAATTTTTACTGTTTTGGGTTTATTTGGTCTTGAAAACTTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTCAATTGGAAAACGACAATGCCTGGGTGAAGGATTGGCTCGAATGGAATTATTTCTATTTTTTGCCAATTTATTCAACAAATTTGATATTAAATTGCATGCGGATAATTTGAATCCAAGCATTGAGAAAGAGTGTGGTGTKACGATGAAGGCCAAGAATTTCAGAGTTGTTATGAAGGAGAGATATTAATTTTTTTTTTCCTTAATTTTTACTGTTTTGGGTTTATTTGGTCTTGAAAACTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15944</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>163736</contig_pos>
        <strand>+</strand>
        <context>TGAATCCAAG[C/T]ATTGAGAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATTCAACAAATTTGATATTAAATTGCATGCGGATAATTTGAATCCAAG</left_flank>
        <right_flank>ATTGAGAAAGAGTGTGGTGTGACGATGAAGGCCAAGAATTTCAGAGTTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGATAATCCTGTTTTAAGAAACATCTTCAAAGGTAATTATGTACACATGTAAGAAACACGATTTTCAGGCCCTTCTCAAATGTCTAAGACCAAAAAGTTACGGTTTCCAGGAATCCCAACGTCTTGCAAACCTGCTCCCAATGAATATCTCTCGTACCACTGCATGTGACATGGAAATCGGTGGCTACCGTATTCCCAAAGATACAGTAATCACTCCACAAATTTGTACAGTACTCTATGATCCGGAGGTGCCCTAACTTCTCTAGGCTACAGTAATCAAAGTGATTTAGGTCTTCCCAGAACCCTATGAATTCCGTCCATCTCGATTTTTGGATTCTTTGGGAAATTTGAAAAAAGTCGAAGAACTCGTGCCATTTTCAATTGGAAAACGACAATGCCTGGGTGAAGGATTGGCTCGAATGGAATTATTTCTATTTTTTGCCAATTTATTCAACAAATTTGATATTAAATTGCATGCGGATAATTTGAATCCAAGCATTGAGAAAGAGTGTGGTGTGACGATGAAGGCCAAGAATTTCAGAGTTGTTATGAAGGAGAGATATTAATTTTTTTTTTCCTTAATTTTTACTGTTTTGGGTTTATTTGGTCTTGAAAACTTTTTTGTGAATGAAATCTTTTTTTGTGAATGAAAATTTTTGCGAAAAAAATCAATGATATAAATTGAAGAGTTTTTTTCGTTTAAAGAAAATATTGCAAAAAATCACTGTTTCAAAATCTGTTAAACCCTTTTTTTGGATTAGACAAAAATGTTGAACCATCGCATTAAAAAAGGTCAGGAGGAATGTAAACGCCCTCCCCTCCTCTCTCCCTCGTCCTCCCATGTGGTCTAGTGGTTAGGATTCGTGGTTTTCACCCACGCGGCCCGGGTTCGATTCCCGGCATGGGAAGTTTCTTTTTTAGACTTTTAGCTAATTGTGAGATGCTTTTGGCTTTAAATTTGGCATTGAAAAATGGTATTCAGTTTTTTGCATAGTAG</canonical>
            <polymorphic>ATTTGATAATCCTGTTTTAAGAAACATCTTCAAAGGTAATTATGTACACATGTAAGAAACACGATTTTCAGGCCCTTCTCAAATGTCTAAGACCAAAAAGTTACGGTTTCCAGGAATCCCAACGTCTTGCAAACCTGCTCCCAATGAATATCTCTCGTACCACTGCATGTGACATGGAAATCGGTGGCTACCGTATTCCCAAAGATACAGTAATCACTCCACAAATTTGTACAGTACTCTATGATCCGGAGGTGCCCTAACTTCTCTAGGCTACAGTAATCAAAGTGATTTAGGTCTTCCCAGAACCCTATGAATTCCGTCCATCTCGATTTTTGGATTCTTTGGGAAATTTGAAAAAAGTCGAAGAACTCGTGCCATTTTCAATTGGAAAACGACAATGCCTGGGTGAAGGATTGGCTCGAATGGAATTATTTCTATTTTTTGCCAATTTATTCAACAAATTTGATATTAAATTGCATGCGGATAATTTGAATCCAAGYATTGAGAAAGAGTGTGGTGTGACGATGAAGGCCAAGAATTTCAGAGTTGTTATGAAGGAGAGATATTAATTTTTTTTTTCCTTAATTTTTACTGTTTTGGGTTTATTTGGTCTTGAAAACTTTTTTGTGAATGAAATCTTTTTTTGTGAATGAAAATTTTTGCGAAAAAAATCAATGATATAAATTGAAGAGTTTTTTTCGTTTAAAGAAAATATTGCAAAAAATCACTGTTTCAAAATCTGTTAAACCCTTTTTTTGGATTAGACAAAAATGTTGAACCATCGCATTAAAAAAGGTCAGGAGGAATGTAAACGCCCTCCCCTCCTCTCTCCCTCGTCCTCCCATGTGGTCTAGTGGTTAGGATTCGTGGTTTTCACCCACGCGGCCCGGGTTCGATTCCCGGCATGGGAAGTTTCTTTTTTAGACTTTTAGCTAATTGTGAGATGCTTTTGGCTTTAAATTTGGCATTGAAAAATGGTATTCAGTTTTTTGCATAGTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCTCGATTTTTGGATTCTT</pcr_primer_p1>
		<pcr_primer_p2>CTCTCCTTCATAACAACTCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CATCTCGATTTTTGGATTCTTTGGGAAATTTGAAAAAAGTCGAAGAACTCGTGCCATTTTCAATTGGAAAACGACAATGCCTGGGTGAAGGATTGGCTCGAATGGAATTATTTCTATTTTTTGCCAATTTATTCAACAAATTTGATATTAAATTGCATGCGGATAATTTGAATCCAAGCATTGAGAAAGAGTGTGGTGTGACGATGAAGGCCAAGAATTTCAGAGTTGTTATGAAGGAGAG</canonical_amplicon>
		<polymorphic_amplicon>CATCTCGATTTTTGGATTCTTTGGGAAATTTGAAAAAAGTCGAAGAACTCGTGCCATTTTCAATTGGAAAACGACAATGCCTGGGTGAAGGATTGGCTCGAATGGAATTATTTCTATTTTTTGCCAATTTATTCAACAAATTTGATATTAAATTGCATGCGGATAATTTGAATCCAAGYATTGAGAAAGAGTGTGGTGTGACGATGAAGGCCAAGAATTTCAGAGTTGTTATGAAGGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15945</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>163637</contig_pos>
        <strand></strand>
        <context>AACGACAATG[C/T]CTGGGTGAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGAAAAAAGTCGAAGAACTCGTGCCATTTTCAATTGGAAAACGACAATG</left_flank>
        <right_flank>CTGGGTGAAGGATTGGCTCGAATGGAATTATTTCTATTTTTTGCCAATTT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTCAACTTGGAATTCGAGTTTTCAAAAAGTAGTGCATTTTTTCAATGCTCCATGTAGTTCTTTTTGCATCATATTTTTCAAATTTGGAAACCACTGATTTGATAATCCTGTTTTAAGAAACATCTTCAAAGGTAATTATGTACACATGTAAGAAACACGATTTTCAGGCCCTTCTCAAATGTCTAAGACCAAAAAGTTACGGTTTCCAGGAATCCCAACGTCTTGCAAACCTGCTCCCAATGAATATCTCTCGTACCACTGCATGTGACATGGAAATCGGTGGCTACCGTATTCCCAAAGATACAGTAATCACTCCACAAATTTGTACAGTACTCTATGATCCGGAGGTGCCCTAACTTCTCTAGGCTACAGTAATCAAAGTGATTTAGGTCTTCCCAGAACCCTATGAATTCCGTCCATCTCGATTTTTGGATTCTTTGGGAAATTTGAAAAAAGTCGAAGAACTCGTGCCATTTTCAATTGGAAAACGACAATGCCTGGGTGAAGGATTGGCTCGAATGGAATTATTTCTATTTTTTGCCAATTTATTCAACAAATTTGATATTAAATTGCATGCGGATAATTTGAATCCAAGCATTGAGAAAGAGTGTGGTGTGACGATGAAGGCCAAGAATTTCAGAGTTGTTATGAAGGAGAGATATTAATTTTTTTTTTCCTTAATTTTTACTGTTTTGGGTTTATTTGGTCTTGAAAACTTTTTTGTGAATGAAATCTTTTTTTGTGAATGAAAATTTTTGCGAAAAAAATCAATGATATAAATTGAAGAGTTTTTTTCGTTTAAAGAAAATATTGCAAAAAATCACTGTTTCAAAATCTGTTAAACCCTTTTTTTGGATTAGACAAAAATGTTGAACCATCGCATTAAAAAAGGTCAGGAGGAATGTAAACGCCCTCCCCTCCTCTCTCCCTCGTCCTCCCATGTGGTCTAGTGGTTAGGATTCGTGGTTTTCACCCACGCGGCCCGGGTTCGATTCCC</canonical>
            <polymorphic>GAATTCAACTTGGAATTCGAGTTTTCAAAAAGTAGTGCATTTTTTCAATGCTCCATGTAGTTCTTTTTGCATCATATTTTTCAAATTTGGAAACCACTGATTTGATAATCCTGTTTTAAGAAACATCTTCAAAGGTAATTATGTACACATGTAAGAAACACGATTTTCAGGCCCTTCTCAAATGTCTAAGACCAAAAAGTTACGGTTTCCAGGAATCCCAACGTCTTGCAAACCTGCTCCCAATGAATATCTCTCGTACCACTGCATGTGACATGGAAATCGGTGGCTACCGTATTCCCAAAGATACAGTAATCACTCCACAAATTTGTACAGTACTCTATGATCCGGAGGTGCCCTAACTTCTCTAGGCTACAGTAATCAAAGTGATTTAGGTCTTCCCAGAACCCTATGAATTCCGTCCATCTCGATTTTTGGATTCTTTGGGAAATTTGAAAAAAGTCGAAGAACTCGTGCCATTTTCAATTGGAAAACGACAATGYCTGGGTGAAGGATTGGCTCGAATGGAATTATTTCTATTTTTTGCCAATTTATTCAACAAATTTGATATTAAATTGCATGCGGATAATTTGAATCCAAGCATTGAGAAAGAGTGTGGTGTGACGATGAAGGCCAAGAATTTCAGAGTTGTTATGAAGGAGAGATATTAATTTTTTTTTTCCTTAATTTTTACTGTTTTGGGTTTATTTGGTCTTGAAAACTTTTTTGTGAATGAAATCTTTTTTTGTGAATGAAAATTTTTGCGAAAAAAATCAATGATATAAATTGAAGAGTTTTTTTCGTTTAAAGAAAATATTGCAAAAAATCACTGTTTCAAAATCTGTTAAACCCTTTTTTTGGATTAGACAAAAATGTTGAACCATCGCATTAAAAAAGGTCAGGAGGAATGTAAACGCCCTCCCCTCCTCTCTCCCTCGTCCTCCCATGTGGTCTAGTGGTTAGGATTCGTGGTTTTCACCCACGCGGCCCGGGTTCGATTCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>485 291 210 14</canonical_bands>
                <polymorphic_bands>776 210 14</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>500 485 15</canonical_bands>
                <polymorphic_bands>985 15</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>499 291 210</canonical_bands>
                <polymorphic_bands>790 210</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATCTCGATTTTTGGATTCTT</pcr_primer_p1>
		<pcr_primer_p2>CTCTCCTTCATAACAACTCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CATCTCGATTTTTGGATTCTTTGGGAAATTTGAAAAAAGTCGAAGAACTCGTGCCATTTTCAATTGGAAAACGACAATGCCTGGGTGAAGGATTGGCTCGAATGGAATTATTTCTATTTTTTGCCAATTTATTCAACAAATTTGATATTAAATTGCATGCGGATAATTTGAATCCAAGCATTGAGAAAGAGTGTGGTGTGACGATGAAGGCCAAGAATTTCAGAGTTGTTATGAAGGAGAG</canonical_amplicon>
		<polymorphic_amplicon>CATCTCGATTTTTGGATTCTTTGGGAAATTTGAAAAAAGTCGAAGAACTCGTGCCATTTTCAATTGGAAAACGACAATGYCTGGGTGAAGGATTGGCTCGAATGGAATTATTTCTATTTTTTGCCAATTTATTCAACAAATTTGATATTAAATTGCATGCGGATAATTTGAATCCAAGCATTGAGAAAGAGTGTGGTGTGACGATGAAGGCCAAGAATTTCAGAGTTGTTATGAAGGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15946</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>163530</contig_pos>
        <strand>+</strand>
        <context>AGTGATTTAG[A/G]TCTTCCCAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCCGGAGGTGCCCTAACTTCTCTAGGCTACAGTAATCAAAGTGATTTAG</left_flank>
        <right_flank>TCTTCCCAGAACCCTATGAATTCCGTCCATCTCGATTTTTGGATTCTTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATATTATCAAAATCCAACTTTGAGACATGTTATATAGATGTTTTATGAAACAGTAAAATGATTTTTTCAAATACTCATAACGAGGATTACAGATAGAGCTACTGTGAATTCAACTTGGAATTCGAGTTTTCAAAAAGTAGTGCATTTTTTCAATGCTCCATGTAGTTCTTTTTGCATCATATTTTTCAAATTTGGAAACCACTGATTTGATAATCCTGTTTTAAGAAACATCTTCAAAGGTAATTATGTACACATGTAAGAAACACGATTTTCAGGCCCTTCTCAAATGTCTAAGACCAAAAAGTTACGGTTTCCAGGAATCCCAACGTCTTGCAAACCTGCTCCCAATGAATATCTCTCGTACCACTGCATGTGACATGGAAATCGGTGGCTACCGTATTCCCAAAGATACAGTAATCACTCCACAAATTTGTACAGTACTCTATGATCCGGAGGTGCCCTAACTTCTCTAGGCTACAGTAATCAAAGTGATTTAGGTCTTCCCAGAACCCTATGAATTCCGTCCATCTCGATTTTTGGATTCTTTGGGAAATTTGAAAAAAGTCGAAGAACTCGTGCCATTTTCAATTGGAAAACGACAATGCCTGGGTGAAGGATTGGCTCGAATGGAATTATTTCTATTTTTTGCCAATTTATTCAACAAATTTGATATTAAATTGCATGCGGATAATTTGAATCCAAGCATTGAGAAAGAGTGTGGTGTGACGATGAAGGCCAAGAATTTCAGAGTTGTTATGAAGGAGAGATATTAATTTTTTTTTTCCTTAATTTTTACTGTTTTGGGTTTATTTGGTCTTGAAAACTTTTTTGTGAATGAAATCTTTTTTTGTGAATGAAAATTTTTGCGAAAAAAATCAATGATATAAATTGAAGAGTTTTTTTCGTTTAAAGAAAATATTGCAAAAAATCACTGTTTCAAAATCTGTTAAACCCTTTTTTTGGATTAGACAAAAATGTTGAACCATCGCATTAAAAAA</canonical>
            <polymorphic>AAATATTATCAAAATCCAACTTTGAGACATGTTATATAGATGTTTTATGAAACAGTAAAATGATTTTTTCAAATACTCATAACGAGGATTACAGATAGAGCTACTGTGAATTCAACTTGGAATTCGAGTTTTCAAAAAGTAGTGCATTTTTTCAATGCTCCATGTAGTTCTTTTTGCATCATATTTTTCAAATTTGGAAACCACTGATTTGATAATCCTGTTTTAAGAAACATCTTCAAAGGTAATTATGTACACATGTAAGAAACACGATTTTCAGGCCCTTCTCAAATGTCTAAGACCAAAAAGTTACGGTTTCCAGGAATCCCAACGTCTTGCAAACCTGCTCCCAATGAATATCTCTCGTACCACTGCATGTGACATGGAAATCGGTGGCTACCGTATTCCCAAAGATACAGTAATCACTCCACAAATTTGTACAGTACTCTATGATCCGGAGGTGCCCTAACTTCTCTAGGCTACAGTAATCAAAGTGATTTAGRTCTTCCCAGAACCCTATGAATTCCGTCCATCTCGATTTTTGGATTCTTTGGGAAATTTGAAAAAAGTCGAAGAACTCGTGCCATTTTCAATTGGAAAACGACAATGCCTGGGTGAAGGATTGGCTCGAATGGAATTATTTCTATTTTTTGCCAATTTATTCAACAAATTTGATATTAAATTGCATGCGGATAATTTGAATCCAAGCATTGAGAAAGAGTGTGGTGTGACGATGAAGGCCAAGAATTTCAGAGTTGTTATGAAGGAGAGATATTAATTTTTTTTTTCCTTAATTTTTACTGTTTTGGGTTTATTTGGTCTTGAAAACTTTTTTGTGAATGAAATCTTTTTTTGTGAATGAAAATTTTTGCGAAAAAAATCAATGATATAAATTGAAGAGTTTTTTTCGTTTAAAGAAAATATTGCAAAAAATCACTGTTTCAAAATCTGTTAAACCCTTTTTTTGGATTAGACAAAAATGTTGAACCATCGCATTAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTCTATGATCCGGAGGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCGCATGCAATTTAATATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACTCTATGATCCGGAGGTGCCCTAACTTCTCTAGGCTACAGTAATCAAAGTGATTTAGGTCTTCCCAGAACCCTATGAATTCCGTCCATCTCGATTTTTGGATTCTTTGGGAAATTTGAAAAAAGTCGAAGAACTCGTGCCATTTTCAATTGGAAAACGACAATGCCTGGGTGAAGGATTGGCTCGAATGGAATTATTTCTATTTTTTGCCAATTTATTCAACAAATTTGATATTAAATTGCATGCGGA</canonical_amplicon>
		<polymorphic_amplicon>TACTCTATGATCCGGAGGTGCCCTAACTTCTCTAGGCTACAGTAATCAAAGTGATTTAGRTCTTCCCAGAACCCTATGAATTCCGTCCATCTCGATTTTTGGATTCTTTGGGAAATTTGAAAAAAGTCGAAGAACTCGTGCCATTTTCAATTGGAAAACGACAATGCCTGGGTGAAGGATTGGCTCGAATGGAATTATTTCTATTTTTTGCCAATTTATTCAACAAATTTGATATTAAATTGCATGCGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15947</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>163504</contig_pos>
        <strand>+</strand>
        <context>TAACTTCTCT[A/C]GGCTACAGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCACAAATTTGTACAGTACTCTATGATCCGGAGGTGCCCTAACTTCTCT</left_flank>
        <right_flank>GGCTACAGTAATCAAAGTGATTTAGGTCTTCCCAGAACCCTATGAATTCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAAATTGCAGCTGAATTTGAGCTAAAATATTATCAAAATCCAACTTTGAGACATGTTATATAGATGTTTTATGAAACAGTAAAATGATTTTTTCAAATACTCATAACGAGGATTACAGATAGAGCTACTGTGAATTCAACTTGGAATTCGAGTTTTCAAAAAGTAGTGCATTTTTTCAATGCTCCATGTAGTTCTTTTTGCATCATATTTTTCAAATTTGGAAACCACTGATTTGATAATCCTGTTTTAAGAAACATCTTCAAAGGTAATTATGTACACATGTAAGAAACACGATTTTCAGGCCCTTCTCAAATGTCTAAGACCAAAAAGTTACGGTTTCCAGGAATCCCAACGTCTTGCAAACCTGCTCCCAATGAATATCTCTCGTACCACTGCATGTGACATGGAAATCGGTGGCTACCGTATTCCCAAAGATACAGTAATCACTCCACAAATTTGTACAGTACTCTATGATCCGGAGGTGCCCTAACTTCTCTAGGCTACAGTAATCAAAGTGATTTAGGTCTTCCCAGAACCCTATGAATTCCGTCCATCTCGATTTTTGGATTCTTTGGGAAATTTGAAAAAAGTCGAAGAACTCGTGCCATTTTCAATTGGAAAACGACAATGCCTGGGTGAAGGATTGGCTCGAATGGAATTATTTCTATTTTTTGCCAATTTATTCAACAAATTTGATATTAAATTGCATGCGGATAATTTGAATCCAAGCATTGAGAAAGAGTGTGGTGTGACGATGAAGGCCAAGAATTTCAGAGTTGTTATGAAGGAGAGATATTAATTTTTTTTTTCCTTAATTTTTACTGTTTTGGGTTTATTTGGTCTTGAAAACTTTTTTGTGAATGAAATCTTTTTTTGTGAATGAAAATTTTTGCGAAAAAAATCAATGATATAAATTGAAGAGTTTTTTTCGTTTAAAGAAAATATTGCAAAAAATCACTGTTTCAAAATCTGTTAAACCCTTTTTTTGGATTAGACAA</canonical>
            <polymorphic>CAAAAATTGCAGCTGAATTTGAGCTAAAATATTATCAAAATCCAACTTTGAGACATGTTATATAGATGTTTTATGAAACAGTAAAATGATTTTTTCAAATACTCATAACGAGGATTACAGATAGAGCTACTGTGAATTCAACTTGGAATTCGAGTTTTCAAAAAGTAGTGCATTTTTTCAATGCTCCATGTAGTTCTTTTTGCATCATATTTTTCAAATTTGGAAACCACTGATTTGATAATCCTGTTTTAAGAAACATCTTCAAAGGTAATTATGTACACATGTAAGAAACACGATTTTCAGGCCCTTCTCAAATGTCTAAGACCAAAAAGTTACGGTTTCCAGGAATCCCAACGTCTTGCAAACCTGCTCCCAATGAATATCTCTCGTACCACTGCATGTGACATGGAAATCGGTGGCTACCGTATTCCCAAAGATACAGTAATCACTCCACAAATTTGTACAGTACTCTATGATCCGGAGGTGCCCTAACTTCTCTMGGCTACAGTAATCAAAGTGATTTAGGTCTTCCCAGAACCCTATGAATTCCGTCCATCTCGATTTTTGGATTCTTTGGGAAATTTGAAAAAAGTCGAAGAACTCGTGCCATTTTCAATTGGAAAACGACAATGCCTGGGTGAAGGATTGGCTCGAATGGAATTATTTCTATTTTTTGCCAATTTATTCAACAAATTTGATATTAAATTGCATGCGGATAATTTGAATCCAAGCATTGAGAAAGAGTGTGGTGTGACGATGAAGGCCAAGAATTTCAGAGTTGTTATGAAGGAGAGATATTAATTTTTTTTTTCCTTAATTTTTACTGTTTTGGGTTTATTTGGTCTTGAAAACTTTTTTGTGAATGAAATCTTTTTTTGTGAATGAAAATTTTTGCGAAAAAAATCAATGATATAAATTGAAGAGTTTTTTTCGTTTAAAGAAAATATTGCAAAAAATCACTGTTTCAAAATCTGTTAAACCCTTTTTTTGGATTAGACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAAATGTCTAAGACCAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>GAGATGGACGGAATTCATAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCAAATGTCTAAGACCAAAAAGTTACGGTTTCCAGGAATCCCAACGTCTTGCAAACCTGCTCCCAATGAATATCTCTCGTACCACTGCATGTGACATGGAAATCGGTGGCTACCGTATTCCCAAAGATACAGTAATCACTCCACAAATTTGTACAGTACTCTATGATCCGGAGGTGCCCTAACTTCTCTAGGCTACAGTAATCAAAGTGATTTAGGTCTTCCCAGAACCCTATGAATTCCGTCCATCTC</canonical_amplicon>
		<polymorphic_amplicon>CTCAAATGTCTAAGACCAAAAAGTTACGGTTTCCAGGAATCCCAACGTCTTGCAAACCTGCTCCCAATGAATATCTCTCGTACCACTGCATGTGACATGGAAATCGGTGGCTACCGTATTCCCAAAGATACAGTAATCACTCCACAAATTTGTACAGTACTCTATGATCCGGAGGTGCCCTAACTTCTCTMGGCTACAGTAATCAAAGTGATTTAGGTCTTCCCAGAACCCTATGAATTCCGTCCATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15948</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>187672</contig_pos>
        <strand></strand>
        <context>ACACAAAGGG[C/T]CATACTGGCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGCAAACTCCAGCAACAACTTCTTCCGTTTCCACAAAAAAACACAAAGGG</left_flank>
        <right_flank>CATACTGGCCAACAGGGATACTGTATCCACAAACCACTCCGACAGTAACC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACAGTAATCAGACCCGCCGACTGGAAGCATGCCAAAACGAAATGTCTTAAAAGTGAGCAATGGAGAATCGAGGGGTATTCTGGAGCCTTTCCGAATAGGAGAAACATTGTTTGCCACGTGGAAAGGAGGTAGAATGGCCAATAGAGGATTTGGGCGGAGAATGTGGCAAAGGAGATGGAGTTCTGGATATTGGGATTCGGATATTCTTTTTTCACATTCTGAGAAACTCCAGATTCCAGATTTCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCAAATTCTAGAAAATTCCGATTTCCTTTCAGAATAAAAAGTTAAAAACCCACCGCAAACTCCAGCAACAACTTCTTCCGTTTCCACAAAAAAACACAAAGGGCCATACTGGCCAACAGGGATACTGTATCCACAAACCACTCCGACAGTAACCTATGTGAATGCTCAATGGCAGTATAAGTTGGCTCAAAAATATCATCCCATCCCGTTTTATCAATAGAGCGTATTTTGTGAATTTTCGCATCTGTCGATTTGTACAAATATGGATAGAGATCATATAGGGAATGGTTCATTTTTAGGTAAATCTGAAAGTTCTGAAAATTAAAAAATCTGAAAAAAATACCAAAAAAAGAAATGTTAAAACCAAAACATACAATGTTTTTACAAAATCGAAAGAGGACAAAAAATTCTGGTCAGTAAAAGGGATAATCCGAAAAATGCCGCCTACGCCAAAAACATGTGAAAATGGAAAAATTGAAATTGATCTTTTAATATTTTTTATAAATTCAACAATTCCGATTTTTGCTGTTTTTTTCGATTTTTTCGCTCATTTTTGGATTGCTGATCCATTGGAACCATATATTCGTCATTGGTTTCTTGGTAG</canonical>
            <polymorphic>TACAGTAATCAGACCCGCCGACTGGAAGCATGCCAAAACGAAATGTCTTAAAAGTGAGCAATGGAGAATCGAGGGGTATTCTGGAGCCTTTCCGAATAGGAGAAACATTGTTTGCCACGTGGAAAGGAGGTAGAATGGCCAATAGAGGATTTGGGCGGAGAATGTGGCAAAGGAGATGGAGTTCTGGATATTGGGATTCGGATATTCTTTTTTCACATTCTGAGAAACTCCAGATTCCAGATTTCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCAAATTCTAGAAAATTCCGATTTCCTTTCAGAATAAAAAGTTAAAAACCCACCGCAAACTCCAGCAACAACTTCTTCCGTTTCCACAAAAAAACACAAAGGGYCATACTGGCCAACAGGGATACTGTATCCACAAACCACTCCGACAGTAACCTATGTGAATGCTCAATGGCAGTATAAGTTGGCTCAAAAATATCATCCCATCCCGTTTTATCAATAGAGCGTATTTTGTGAATTTTCGCATCTGTCGATTTGTACAAATATGGATAGAGATCATATAGGGAATGGTTCATTTTTAGGTAAATCTGAAAGTTCTGAAAATTAAAAAATCTGAAAAAAATACCAAAAAAAGAAATGTTAAAACCAAAACATACAATGTTTTTACAAAATCGAAAGAGGACAAAAAATTCTGGTCAGTAAAAGGGATAATCCGAAAAATGCCGCCTACGCCAAAAACATGTGAAAATGGAAAAATTGAAATTGATCTTTTAATATTTTTTATAAATTCAACAATTCCGATTTTTGCTGTTTTTTTCGATTTTTTCGCTCATTTTTGGATTGCTGATCCATTGGAACCATATATTCGTCATTGGTTTCTTGGTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCCNNNNNGGC</site>
                <isoschizomers>
                    <enzyme>BglI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>492 361 138 9</canonical_bands>
                <polymorphic_bands>492 370 138</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>505 337 158</canonical_bands>
                <polymorphic_bands>842 158</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>419 361 86 73 52 9</canonical_bands>
                <polymorphic_bands>419 370 86 73 52</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCCNNNNNGGCC</site>
                <isoschizomers>
                    <enzyme>SfiI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTCTAGAAAATTCCGATTTC</pcr_primer_p1>
		<pcr_primer_p2>GATGCGAAAATTCACAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAATTCTAGAAAATTCCGATTTCCTTTCAGAATAAAAAGTTAAAAACCCACCGCAAACTCCAGCAACAACTTCTTCCGTTTCCACAAAAAAACACAAAGGGCCATACTGGCCAACAGGGATACTGTATCCACAAACCACTCCGACAGTAACCTATGTGAATGCTCAATGGCAGTATAAGTTGGCTCAAAAATATCATCCCATCCCGTTTTATCAATAGAGCGTATTTTGTGAATTTTCGCATC</canonical_amplicon>
		<polymorphic_amplicon>AAATTCTAGAAAATTCCGATTTCCTTTCAGAATAAAAAGTTAAAAACCCACCGCAAACTCCAGCAACAACTTCTTCCGTTTCCACAAAAAAACACAAAGGGYCATACTGGCCAACAGGGATACTGTATCCACAAACCACTCCGACAGTAACCTATGTGAATGCTCAATGGCAGTATAAGTTGGCTCAAAAATATCATCCCATCCCGTTTTATCAATAGAGCGTATTTTGTGAATTTTCGCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15949</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>187688</contig_pos>
        <strand></strand>
        <context>TGGCCAACAG[G/C]GATACTGTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AACTTCTTCCGTTTCCACAAAAAAACACAAAGGGCCATACTGGCCAACAG</left_flank>
        <right_flank>GATACTGTATCCACAAACCACTCCGACAGTAACCTATGTGAATGCTCAAT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCGACTGGAAGCATGCCAAAACGAAATGTCTTAAAAGTGAGCAATGGAGAATCGAGGGGTATTCTGGAGCCTTTCCGAATAGGAGAAACATTGTTTGCCACGTGGAAAGGAGGTAGAATGGCCAATAGAGGATTTGGGCGGAGAATGTGGCAAAGGAGATGGAGTTCTGGATATTGGGATTCGGATATTCTTTTTTCACATTCTGAGAAACTCCAGATTCCAGATTTCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCAAATTCTAGAAAATTCCGATTTCCTTTCAGAATAAAAAGTTAAAAACCCACCGCAAACTCCAGCAACAACTTCTTCCGTTTCCACAAAAAAACACAAAGGGCCATACTGGCCAACAGGGATACTGTATCCACAAACCACTCCGACAGTAACCTATGTGAATGCTCAATGGCAGTATAAGTTGGCTCAAAAATATCATCCCATCCCGTTTTATCAATAGAGCGTATTTTGTGAATTTTCGCATCTGTCGATTTGTACAAATATGGATAGAGATCATATAGGGAATGGTTCATTTTTAGGTAAATCTGAAAGTTCTGAAAATTAAAAAATCTGAAAAAAATACCAAAAAAAGAAATGTTAAAACCAAAACATACAATGTTTTTACAAAATCGAAAGAGGACAAAAAATTCTGGTCAGTAAAAGGGATAATCCGAAAAATGCCGCCTACGCCAAAAACATGTGAAAATGGAAAAATTGAAATTGATCTTTTAATATTTTTTATAAATTCAACAATTCCGATTTTTGCTGTTTTTTTCGATTTTTTCGCTCATTTTTGGATTGCTGATCCATTGGAACCATATATTCGTCATTGGTTTCTTGGTAGCGCATTGATGGTTGAT</canonical>
            <polymorphic>GCCGACTGGAAGCATGCCAAAACGAAATGTCTTAAAAGTGAGCAATGGAGAATCGAGGGGTATTCTGGAGCCTTTCCGAATAGGAGAAACATTGTTTGCCACGTGGAAAGGAGGTAGAATGGCCAATAGAGGATTTGGGCGGAGAATGTGGCAAAGGAGATGGAGTTCTGGATATTGGGATTCGGATATTCTTTTTTCACATTCTGAGAAACTCCAGATTCCAGATTTCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCAAATTCTAGAAAATTCCGATTTCCTTTCAGAATAAAAAGTTAAAAACCCACCGCAAACTCCAGCAACAACTTCTTCCGTTTCCACAAAAAAACACAAAGGGCCATACTGGCCAACAGSGATACTGTATCCACAAACCACTCCGACAGTAACCTATGTGAATGCTCAATGGCAGTATAAGTTGGCTCAAAAATATCATCCCATCCCGTTTTATCAATAGAGCGTATTTTGTGAATTTTCGCATCTGTCGATTTGTACAAATATGGATAGAGATCATATAGGGAATGGTTCATTTTTAGGTAAATCTGAAAGTTCTGAAAATTAAAAAATCTGAAAAAAATACCAAAAAAAGAAATGTTAAAACCAAAACATACAATGTTTTTACAAAATCGAAAGAGGACAAAAAATTCTGGTCAGTAAAAGGGATAATCCGAAAAATGCCGCCTACGCCAAAAACATGTGAAAATGGAAAAATTGAAATTGATCTTTTAATATTTTTTATAAATTCAACAATTCCGATTTTTGCTGTTTTTTTCGATTTTTTCGCTCATTTTTGGATTGCTGATCCATTGGAACCATATATTCGTCATTGGTTTCTTGGTAGCGCATTGATGGTTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTCCAGCAACAACTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>GATTTACCTAAAAATGAACCATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACTCCAGCAACAACTTCTTCCGTTTCCACAAAAAAACACAAAGGGCCATACTGGCCAACAGGGATACTGTATCCACAAACCACTCCGACAGTAACCTATGTGAATGCTCAATGGCAGTATAAGTTGGCTCAAAAATATCATCCCATCCCGTTTTATCAATAGAGCGTATTTTGTGAATTTTCGCATCTGTCGATTTGTACAAATATGGATAGAGATCATATAGGGAATGGTTCATTTTTAGGTAAATC</canonical_amplicon>
		<polymorphic_amplicon>AACTCCAGCAACAACTTCTTCCGTTTCCACAAAAAAACACAAAGGGCCATACTGGCCAACAGSGATACTGTATCCACAAACCACTCCGACAGTAACCTATGTGAATGCTCAATGGCAGTATAAGTTGGCTCAAAAATATCATCCCATCCCGTTTTATCAATAGAGCGTATTTTGTGAATTTTCGCATCTGTCGATTTGTACAAATATGGATAGAGATCATATAGGGAATGGTTCATTTTTAGGTAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15950</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>187793</contig_pos>
        <strand></strand>
        <context>CAATAGAGCG[T/C]ATTTTGTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTATAAGTTGGCTCAAAAATATCATCCCATCCCGTTTTATCAATAGAGCG</left_flank>
        <right_flank>ATTTTGTGAATTTTCGCATCTGTCGATTTGTACAAATATGGATAGAGATC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAGGAGGTAGAATGGCCAATAGAGGATTTGGGCGGAGAATGTGGCAAAGGAGATGGAGTTCTGGATATTGGGATTCGGATATTCTTTTTTCACATTCTGAGAAACTCCAGATTCCAGATTTCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCAAATTCTAGAAAATTCCGATTTCCTTTCAGAATAAAAAGTTAAAAACCCACCGCAAACTCCAGCAACAACTTCTTCCGTTTCCACAAAAAAACACAAAGGGCCATACTGGCCAACAGGGATACTGTATCCACAAACCACTCCGACAGTAACCTATGTGAATGCTCAATGGCAGTATAAGTTGGCTCAAAAATATCATCCCATCCCGTTTTATCAATAGAGCGTATTTTGTGAATTTTCGCATCTGTCGATTTGTACAAATATGGATAGAGATCATATAGGGAATGGTTCATTTTTAGGTAAATCTGAAAGTTCTGAAAATTAAAAAATCTGAAAAAAATACCAAAAAAAGAAATGTTAAAACCAAAACATACAATGTTTTTACAAAATCGAAAGAGGACAAAAAATTCTGGTCAGTAAAAGGGATAATCCGAAAAATGCCGCCTACGCCAAAAACATGTGAAAATGGAAAAATTGAAATTGATCTTTTAATATTTTTTATAAATTCAACAATTCCGATTTTTGCTGTTTTTTTCGATTTTTTCGCTCATTTTTGGATTGCTGATCCATTGGAACCATATATTCGTCATTGGTTTCTTGGTAGCGCATTGATGGTTGATTTCCTATAATTAGGGTTAATTGGAAATGTTTAATTAGCCTAAAAAAGATTTTTCAGCTAACTTTCCACATTTTTCAACAATTTTCTAGCCTAATTAAAAGATAAT</canonical>
            <polymorphic>GAAAGGAGGTAGAATGGCCAATAGAGGATTTGGGCGGAGAATGTGGCAAAGGAGATGGAGTTCTGGATATTGGGATTCGGATATTCTTTTTTCACATTCTGAGAAACTCCAGATTCCAGATTTCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCAAATTCTAGAAAATTCCGATTTCCTTTCAGAATAAAAAGTTAAAAACCCACCGCAAACTCCAGCAACAACTTCTTCCGTTTCCACAAAAAAACACAAAGGGCCATACTGGCCAACAGGGATACTGTATCCACAAACCACTCCGACAGTAACCTATGTGAATGCTCAATGGCAGTATAAGTTGGCTCAAAAATATCATCCCATCCCGTTTTATCAATAGAGCGYATTTTGTGAATTTTCGCATCTGTCGATTTGTACAAATATGGATAGAGATCATATAGGGAATGGTTCATTTTTAGGTAAATCTGAAAGTTCTGAAAATTAAAAAATCTGAAAAAAATACCAAAAAAAGAAATGTTAAAACCAAAACATACAATGTTTTTACAAAATCGAAAGAGGACAAAAAATTCTGGTCAGTAAAAGGGATAATCCGAAAAATGCCGCCTACGCCAAAAACATGTGAAAATGGAAAAATTGAAATTGATCTTTTAATATTTTTTATAAATTCAACAATTCCGATTTTTGCTGTTTTTTTCGATTTTTTCGCTCATTTTTGGATTGCTGATCCATTGGAACCATATATTCGTCATTGGTTTCTTGGTAGCGCATTGATGGTTGATTTCCTATAATTAGGGTTAATTGGAAATGTTTAATTAGCCTAAAAAAGATTTTTCAGCTAACTTTCCACATTTTTCAACAATTTTCTAGCCTAATTAAAAGATAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTAACCTATGTGAATGCTCAAT</pcr_primer_p1>
		<pcr_primer_p2>CGATTTTGTAAAAACATTGTATG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGTAACCTATGTGAATGCTCAATGGCAGTATAAGTTGGCTCAAAAATATCATCCCATCCCGTTTTATCAATAGAGCGTATTTTGTGAATTTTCGCATCTGTCGATTTGTACAAATATGGATAGAGATCATATAGGGAATGGTTCATTTTTAGGTAAATCTGAAAGTTCTGAAAATTAAAAAATCTGAAAAAAATACCAAAAAAAGAAATGTTAAAACCAAAACATACAATGTTTTTACAAAATCG</canonical_amplicon>
		<polymorphic_amplicon>AGTAACCTATGTGAATGCTCAATGGCAGTATAAGTTGGCTCAAAAATATCATCCCATCCCGTTTTATCAATAGAGCGYATTTTGTGAATTTTCGCATCTGTCGATTTGTACAAATATGGATAGAGATCATATAGGGAATGGTTCATTTTTAGGTAAATCTGAAAGTTCTGAAAATTAAAAAATCTGAAAAAAATACCAAAAAAAGAAATGTTAAAACCAAAACATACAATGTTTTTACAAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15951</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>187814</contig_pos>
        <strand></strand>
        <context>TTTTCGCATC[T/A]GTCGATTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCATCCCATCCCGTTTTATCAATAGAGCGTATTTTGTGAATTTTCGCATC</left_flank>
        <right_flank>GTCGATTTGTACAAATATGGATAGAGATCATATAGGGAATGGTTCATTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAGGATTTGGGCGGAGAATGTGGCAAAGGAGATGGAGTTCTGGATATTGGGATTCGGATATTCTTTTTTCACATTCTGAGAAACTCCAGATTCCAGATTTCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCAAATTCTAGAAAATTCCGATTTCCTTTCAGAATAAAAAGTTAAAAACCCACCGCAAACTCCAGCAACAACTTCTTCCGTTTCCACAAAAAAACACAAAGGGCCATACTGGCCAACAGGGATACTGTATCCACAAACCACTCCGACAGTAACCTATGTGAATGCTCAATGGCAGTATAAGTTGGCTCAAAAATATCATCCCATCCCGTTTTATCAATAGAGCGTATTTTGTGAATTTTCGCATCTGTCGATTTGTACAAATATGGATAGAGATCATATAGGGAATGGTTCATTTTTAGGTAAATCTGAAAGTTCTGAAAATTAAAAAATCTGAAAAAAATACCAAAAAAAGAAATGTTAAAACCAAAACATACAATGTTTTTACAAAATCGAAAGAGGACAAAAAATTCTGGTCAGTAAAAGGGATAATCCGAAAAATGCCGCCTACGCCAAAAACATGTGAAAATGGAAAAATTGAAATTGATCTTTTAATATTTTTTATAAATTCAACAATTCCGATTTTTGCTGTTTTTTTCGATTTTTTCGCTCATTTTTGGATTGCTGATCCATTGGAACCATATATTCGTCATTGGTTTCTTGGTAGCGCATTGATGGTTGATTTCCTATAATTAGGGTTAATTGGAAATGTTTAATTAGCCTAAAAAAGATTTTTCAGCTAACTTTCCACATTTTTCAACAATTTTCTAGCCTAATTAAAAGATAATTACCTAAATACTGTGCCATAT</canonical>
            <polymorphic>TAGAGGATTTGGGCGGAGAATGTGGCAAAGGAGATGGAGTTCTGGATATTGGGATTCGGATATTCTTTTTTCACATTCTGAGAAACTCCAGATTCCAGATTTCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCAAATTCTAGAAAATTCCGATTTCCTTTCAGAATAAAAAGTTAAAAACCCACCGCAAACTCCAGCAACAACTTCTTCCGTTTCCACAAAAAAACACAAAGGGCCATACTGGCCAACAGGGATACTGTATCCACAAACCACTCCGACAGTAACCTATGTGAATGCTCAATGGCAGTATAAGTTGGCTCAAAAATATCATCCCATCCCGTTTTATCAATAGAGCGTATTTTGTGAATTTTCGCATCWGTCGATTTGTACAAATATGGATAGAGATCATATAGGGAATGGTTCATTTTTAGGTAAATCTGAAAGTTCTGAAAATTAAAAAATCTGAAAAAAATACCAAAAAAAGAAATGTTAAAACCAAAACATACAATGTTTTTACAAAATCGAAAGAGGACAAAAAATTCTGGTCAGTAAAAGGGATAATCCGAAAAATGCCGCCTACGCCAAAAACATGTGAAAATGGAAAAATTGAAATTGATCTTTTAATATTTTTTATAAATTCAACAATTCCGATTTTTGCTGTTTTTTTCGATTTTTTCGCTCATTTTTGGATTGCTGATCCATTGGAACCATATATTCGTCATTGGTTTCTTGGTAGCGCATTGATGGTTGATTTCCTATAATTAGGGTTAATTGGAAATGTTTAATTAGCCTAAAAAAGATTTTTCAGCTAACTTTCCACATTTTTCAACAATTTTCTAGCCTAATTAAAAGATAATTACCTAAATACTGTGCCATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGTTGGCTCAAAAATATCATC</pcr_primer_p1>
		<pcr_primer_p2>TTATCCCTTTTACTGACCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAAGTTGGCTCAAAAATATCATCCCATCCCGTTTTATCAATAGAGCGTATTTTGTGAATTTTCGCATCTGTCGATTTGTACAAATATGGATAGAGATCATATAGGGAATGGTTCATTTTTAGGTAAATCTGAAAGTTCTGAAAATTAAAAAATCTGAAAAAAATACCAAAAAAAGAAATGTTAAAACCAAAACATACAATGTTTTTACAAAATCGAAAGAGGACAAAAAATTCTGGTCAGTAAAAGGGATAA</canonical_amplicon>
		<polymorphic_amplicon>TAAGTTGGCTCAAAAATATCATCCCATCCCGTTTTATCAATAGAGCGTATTTTGTGAATTTTCGCATCWGTCGATTTGTACAAATATGGATAGAGATCATATAGGGAATGGTTCATTTTTAGGTAAATCTGAAAGTTCTGAAAATTAAAAAATCTGAAAAAAATACCAAAAAAAGAAATGTTAAAACCAAAACATACAATGTTTTTACAAAATCGAAAGAGGACAAAAAATTCTGGTCAGTAAAAGGGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15952</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>190308</contig_pos>
        <strand>+</strand>
        <context>CAATATCAGC[C/T]CTGCACCCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCAACTCCAAAATCAATTCTACAACTCACATTAACCACAATATCAGC</left_flank>
        <right_flank>CTGCACCCTTCCAAATGACACTGAGAATTCAGATAATCCATCTGATTGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCTGTAGAAGATGCCAAACATTTGTTAACTGATAAATTGCTTATCATAGTATCACCAATGTTTTATCAGTTGACACTTTATTGATATTTCTTATAGGAACTGAGATAATTGAGCTCAAAGTGACCATACCTGAAATATCCTTAAGCGCTGGACACGGGATACACGACTCCACAAACCACCGGAATTGAGTCGATGGGGTGGGATCAGACATGCTGGATACGTTAACCTTGAAATTATTAGTAATTAAATTTTTAATTAGGATATTTAGGGCAAGAAGTTAAAAAAGTTGTGAGTAATTAAGTTGTTAATTAGTCTTATTACTCACATGATAATCCTTATTGCTTTCCTTGGACCCACTAAGTAGGTCCTTGAAAAATACCGAAGCATGGCAGAGTTGGTGGCGACATAACATGAATCGGGTGGACTAGAAAACGTCATTTTTGAAAATTTTCAACTCCAAAATCAATTCTACAACTCACATTAACCACAATATCAGCTCTGCACCCTTCCAAATGACACTGAGAATTCAGATAATCCATCTGATTGATCACAGCTGTAGACGGACCCATTTTCTTTTGTGGCGACTTTGATTTGCTTTTCAGCTTTCTCTCCTCATTCGATTCTCGTTTCATTTTCCTTGGAGAATGTGATCGAGCCCTCATAAGTGGTCCAGGAACTGGAGCTTCAAATTGTGGAGACTTGGATGGTGGGTAGAAGACGTCGTCGATTTCTCGCGGCTCCGTGTTCCAGGAATGGATTCCGAATGACTCCTGAAATTATGGTTGAGTTGAATGAAACTATGAAAATCGAATTTTCCAGGCACAAAACTTTCAAATACCGCTTAATATGATATCAGATAGTTGGCAAGTCTGAAAACTTTGGGTTACTGCAACTAGAATCGTTGTACAGTACCGGTCAATAAGATATACAAAAACAAACGTATTTTAAGTTGTTTTTTAGCAGTTTCGACTATCTTCAGTGGTCTGGAAACCAACGTT</canonical>
            <polymorphic>TTCCTGTAGAAGATGCCAAACATTTGTTAACTGATAAATTGCTTATCATAGTATCACCAATGTTTTATCAGTTGACACTTTATTGATATTTCTTATAGGAACTGAGATAATTGAGCTCAAAGTGACCATACCTGAAATATCCTTAAGCGCTGGACACGGGATACACGACTCCACAAACCACCGGAATTGAGTCGATGGGGTGGGATCAGACATGCTGGATACGTTAACCTTGAAATTATTAGTAATTAAATTTTTAATTAGGATATTTAGGGCAAGAAGTTAAAAAAGTTGTGAGTAATTAAGTTGTTAATTAGTCTTATTACTCACATGATAATCCTTATTGCTTTCCTTGGACCCACTAAGTAGGTCCTTGAAAAATACCGAAGCATGGCAGAGTTGGTGGCGACATAACATGAATCGGGTGGACTAGAAAACGTCATTTTTGAAAATTTTCAACTCCAAAATCAATTCTACAACTCACATTAACCACAATATCAGCYCTGCACCCTTCCAAATGACACTGAGAATTCAGATAATCCATCTGATTGATCACAGCTGTAGACGGACCCATTTTCTTTTGTGGCGACTTTGATTTGCTTTTCAGCTTTCTCTCCTCATTCGATTCTCGTTTCATTTTCCTTGGAGAATGTGATCGAGCCCTCATAAGTGGTCCAGGAACTGGAGCTTCAAATTGTGGAGACTTGGATGGTGGGTAGAAGACGTCGTCGATTTCTCGCGGCTCCGTGTTCCAGGAATGGATTCCGAATGACTCCTGAAATTATGGTTGAGTTGAATGAAACTATGAAAATCGAATTTTCCAGGCACAAAACTTTCAAATACCGCTTAATATGATATCAGATAGTTGGCAAGTCTGAAAACTTTGGGTTACTGCAACTAGAATCGTTGTACAGTACCGGTCAATAAGATATACAAAAACAAACGTATTTTAAGTTGTTTTTTAGCAGTTTCGACTATCTTCAGTGGTCTGGAAACCAACGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>383 316 115 80 57 49</canonical_bands>
                <polymorphic_bands>440 316 115 80 49</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>383 261 115 57 55 53 49 27</canonical_bands>
                <polymorphic_bands>440 261 115 55 53 49 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACTAAGTAGGTCCTTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGCTGAAAAGCAAATCAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCACTAAGTAGGTCCTTGAAAAATACCGAAGCATGGCAGAGTTGGTGGCGACATAACATGAATCGGGTGGACTAGAAAACGTCATTTTTGAAAATTTTCAACTCCAAAATCAATTCTACAACTCACATTAACCACAATATCAGCTCTGCACCCTTCCAAATGACACTGAGAATTCAGATAATCCATCTGATTGATCACAGCTGTAGACGGACCCATTTTCTTTTGTGGCGACTTTGATTTGCTTTTCAGCT</canonical_amplicon>
		<polymorphic_amplicon>CCACTAAGTAGGTCCTTGAAAAATACCGAAGCATGGCAGAGTTGGTGGCGACATAACATGAATCGGGTGGACTAGAAAACGTCATTTTTGAAAATTTTCAACTCCAAAATCAATTCTACAACTCACATTAACCACAATATCAGCYCTGCACCCTTCCAAATGACACTGAGAATTCAGATAATCCATCTGATTGATCACAGCTGTAGACGGACCCATTTTCTTTTGTGGCGACTTTGATTTGCTTTTCAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15953</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>190282</contig_pos>
        <strand>+</strand>
        <context>ATCAATTCTA[A/C]AACTCACATT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGACTAGAAAACGTCATTTTTGAAAATTTTCAACTCCAAAATCAATTCTA</left_flank>
        <right_flank>AACTCACATTAACCACAATATCAGCTCTGCACCCTTCCAAATGACACTGA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGCTCTTTGAGCTTAATTATCTCGGTTCCTGTAGAAGATGCCAAACATTTGTTAACTGATAAATTGCTTATCATAGTATCACCAATGTTTTATCAGTTGACACTTTATTGATATTTCTTATAGGAACTGAGATAATTGAGCTCAAAGTGACCATACCTGAAATATCCTTAAGCGCTGGACACGGGATACACGACTCCACAAACCACCGGAATTGAGTCGATGGGGTGGGATCAGACATGCTGGATACGTTAACCTTGAAATTATTAGTAATTAAATTTTTAATTAGGATATTTAGGGCAAGAAGTTAAAAAAGTTGTGAGTAATTAAGTTGTTAATTAGTCTTATTACTCACATGATAATCCTTATTGCTTTCCTTGGACCCACTAAGTAGGTCCTTGAAAAATACCGAAGCATGGCAGAGTTGGTGGCGACATAACATGAATCGGGTGGACTAGAAAACGTCATTTTTGAAAATTTTCAACTCCAAAATCAATTCTACAACTCACATTAACCACAATATCAGCTCTGCACCCTTCCAAATGACACTGAGAATTCAGATAATCCATCTGATTGATCACAGCTGTAGACGGACCCATTTTCTTTTGTGGCGACTTTGATTTGCTTTTCAGCTTTCTCTCCTCATTCGATTCTCGTTTCATTTTCCTTGGAGAATGTGATCGAGCCCTCATAAGTGGTCCAGGAACTGGAGCTTCAAATTGTGGAGACTTGGATGGTGGGTAGAAGACGTCGTCGATTTCTCGCGGCTCCGTGTTCCAGGAATGGATTCCGAATGACTCCTGAAATTATGGTTGAGTTGAATGAAACTATGAAAATCGAATTTTCCAGGCACAAAACTTTCAAATACCGCTTAATATGATATCAGATAGTTGGCAAGTCTGAAAACTTTGGGTTACTGCAACTAGAATCGTTGTACAGTACCGGTCAATAAGATATACAAAAACAAACGTATTTTAAGTTGTTTTTTAGCAGTTTCGACTA</canonical>
            <polymorphic>GTGCTCTTTGAGCTTAATTATCTCGGTTCCTGTAGAAGATGCCAAACATTTGTTAACTGATAAATTGCTTATCATAGTATCACCAATGTTTTATCAGTTGACACTTTATTGATATTTCTTATAGGAACTGAGATAATTGAGCTCAAAGTGACCATACCTGAAATATCCTTAAGCGCTGGACACGGGATACACGACTCCACAAACCACCGGAATTGAGTCGATGGGGTGGGATCAGACATGCTGGATACGTTAACCTTGAAATTATTAGTAATTAAATTTTTAATTAGGATATTTAGGGCAAGAAGTTAAAAAAGTTGTGAGTAATTAAGTTGTTAATTAGTCTTATTACTCACATGATAATCCTTATTGCTTTCCTTGGACCCACTAAGTAGGTCCTTGAAAAATACCGAAGCATGGCAGAGTTGGTGGCGACATAACATGAATCGGGTGGACTAGAAAACGTCATTTTTGAAAATTTTCAACTCCAAAATCAATTCTAMAACTCACATTAACCACAATATCAGCTCTGCACCCTTCCAAATGACACTGAGAATTCAGATAATCCATCTGATTGATCACAGCTGTAGACGGACCCATTTTCTTTTGTGGCGACTTTGATTTGCTTTTCAGCTTTCTCTCCTCATTCGATTCTCGTTTCATTTTCCTTGGAGAATGTGATCGAGCCCTCATAAGTGGTCCAGGAACTGGAGCTTCAAATTGTGGAGACTTGGATGGTGGGTAGAAGACGTCGTCGATTTCTCGCGGCTCCGTGTTCCAGGAATGGATTCCGAATGACTCCTGAAATTATGGTTGAGTTGAATGAAACTATGAAAATCGAATTTTCCAGGCACAAAACTTTCAAATACCGCTTAATATGATATCAGATAGTTGGCAAGTCTGAAAACTTTGGGTTACTGCAACTAGAATCGTTGTACAGTACCGGTCAATAAGATATACAAAAACAAACGTATTTTAAGTTGTTTTTTAGCAGTTTCGACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACTAAGTAGGTCCTTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGCTGAAAAGCAAATCAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCACTAAGTAGGTCCTTGAAAAATACCGAAGCATGGCAGAGTTGGTGGCGACATAACATGAATCGGGTGGACTAGAAAACGTCATTTTTGAAAATTTTCAACTCCAAAATCAATTCTACAACTCACATTAACCACAATATCAGCTCTGCACCCTTCCAAATGACACTGAGAATTCAGATAATCCATCTGATTGATCACAGCTGTAGACGGACCCATTTTCTTTTGTGGCGACTTTGATTTGCTTTTCAGCT</canonical_amplicon>
		<polymorphic_amplicon>CCACTAAGTAGGTCCTTGAAAAATACCGAAGCATGGCAGAGTTGGTGGCGACATAACATGAATCGGGTGGACTAGAAAACGTCATTTTTGAAAATTTTCAACTCCAAAATCAATTCTAMAACTCACATTAACCACAATATCAGCTCTGCACCCTTCCAAATGACACTGAGAATTCAGATAATCCATCTGATTGATCACAGCTGTAGACGGACCCATTTTCTTTTGTGGCGACTTTGATTTGCTTTTCAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15954</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>190267</contig_pos>
        <strand>+</strand>
        <context>ATTTTCAACT[C/T]CAAAATCAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAACATGAATCGGGTGGACTAGAAAACGTCATTTTTGAAAATTTTCAACT</left_flank>
        <right_flank>CAAAATCAATTCTACAACTCACATTAACCACAATATCAGCTCTGCACCCT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAAACCTTATATGTGCTCTTTGAGCTTAATTATCTCGGTTCCTGTAGAAGATGCCAAACATTTGTTAACTGATAAATTGCTTATCATAGTATCACCAATGTTTTATCAGTTGACACTTTATTGATATTTCTTATAGGAACTGAGATAATTGAGCTCAAAGTGACCATACCTGAAATATCCTTAAGCGCTGGACACGGGATACACGACTCCACAAACCACCGGAATTGAGTCGATGGGGTGGGATCAGACATGCTGGATACGTTAACCTTGAAATTATTAGTAATTAAATTTTTAATTAGGATATTTAGGGCAAGAAGTTAAAAAAGTTGTGAGTAATTAAGTTGTTAATTAGTCTTATTACTCACATGATAATCCTTATTGCTTTCCTTGGACCCACTAAGTAGGTCCTTGAAAAATACCGAAGCATGGCAGAGTTGGTGGCGACATAACATGAATCGGGTGGACTAGAAAACGTCATTTTTGAAAATTTTCAACTCCAAAATCAATTCTACAACTCACATTAACCACAATATCAGCTCTGCACCCTTCCAAATGACACTGAGAATTCAGATAATCCATCTGATTGATCACAGCTGTAGACGGACCCATTTTCTTTTGTGGCGACTTTGATTTGCTTTTCAGCTTTCTCTCCTCATTCGATTCTCGTTTCATTTTCCTTGGAGAATGTGATCGAGCCCTCATAAGTGGTCCAGGAACTGGAGCTTCAAATTGTGGAGACTTGGATGGTGGGTAGAAGACGTCGTCGATTTCTCGCGGCTCCGTGTTCCAGGAATGGATTCCGAATGACTCCTGAAATTATGGTTGAGTTGAATGAAACTATGAAAATCGAATTTTCCAGGCACAAAACTTTCAAATACCGCTTAATATGATATCAGATAGTTGGCAAGTCTGAAAACTTTGGGTTACTGCAACTAGAATCGTTGTACAGTACCGGTCAATAAGATATACAAAAACAAACGTATTTTAAGTTGTTTTT</canonical>
            <polymorphic>GAAAAAACCTTATATGTGCTCTTTGAGCTTAATTATCTCGGTTCCTGTAGAAGATGCCAAACATTTGTTAACTGATAAATTGCTTATCATAGTATCACCAATGTTTTATCAGTTGACACTTTATTGATATTTCTTATAGGAACTGAGATAATTGAGCTCAAAGTGACCATACCTGAAATATCCTTAAGCGCTGGACACGGGATACACGACTCCACAAACCACCGGAATTGAGTCGATGGGGTGGGATCAGACATGCTGGATACGTTAACCTTGAAATTATTAGTAATTAAATTTTTAATTAGGATATTTAGGGCAAGAAGTTAAAAAAGTTGTGAGTAATTAAGTTGTTAATTAGTCTTATTACTCACATGATAATCCTTATTGCTTTCCTTGGACCCACTAAGTAGGTCCTTGAAAAATACCGAAGCATGGCAGAGTTGGTGGCGACATAACATGAATCGGGTGGACTAGAAAACGTCATTTTTGAAAATTTTCAACTYCAAAATCAATTCTACAACTCACATTAACCACAATATCAGCTCTGCACCCTTCCAAATGACACTGAGAATTCAGATAATCCATCTGATTGATCACAGCTGTAGACGGACCCATTTTCTTTTGTGGCGACTTTGATTTGCTTTTCAGCTTTCTCTCCTCATTCGATTCTCGTTTCATTTTCCTTGGAGAATGTGATCGAGCCCTCATAAGTGGTCCAGGAACTGGAGCTTCAAATTGTGGAGACTTGGATGGTGGGTAGAAGACGTCGTCGATTTCTCGCGGCTCCGTGTTCCAGGAATGGATTCCGAATGACTCCTGAAATTATGGTTGAGTTGAATGAAACTATGAAAATCGAATTTTCCAGGCACAAAACTTTCAAATACCGCTTAATATGATATCAGATAGTTGGCAAGTCTGAAAACTTTGGGTTACTGCAACTAGAATCGTTGTACAGTACCGGTCAATAAGATATACAAAAACAAACGTATTTTAAGTTGTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACTAAGTAGGTCCTTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGCTGAAAAGCAAATCAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCACTAAGTAGGTCCTTGAAAAATACCGAAGCATGGCAGAGTTGGTGGCGACATAACATGAATCGGGTGGACTAGAAAACGTCATTTTTGAAAATTTTCAACTCCAAAATCAATTCTACAACTCACATTAACCACAATATCAGCTCTGCACCCTTCCAAATGACACTGAGAATTCAGATAATCCATCTGATTGATCACAGCTGTAGACGGACCCATTTTCTTTTGTGGCGACTTTGATTTGCTTTTCAGCT</canonical_amplicon>
		<polymorphic_amplicon>CCACTAAGTAGGTCCTTGAAAAATACCGAAGCATGGCAGAGTTGGTGGCGACATAACATGAATCGGGTGGACTAGAAAACGTCATTTTTGAAAATTTTCAACTYCAAAATCAATTCTACAACTCACATTAACCACAATATCAGCTCTGCACCCTTCCAAATGACACTGAGAATTCAGATAATCCATCTGATTGATCACAGCTGTAGACGGACCCATTTTCTTTTGTGGCGACTTTGATTTGCTTTTCAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15955</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>190090</contig_pos>
        <strand>+</strand>
        <context>GCAAGAAGTT[A/G]AAAAAGTTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAATTATTAGTAATTAAATTTTTAATTAGGATATTTAGGGCAAGAAGTT</left_flank>
        <right_flank>AAAAAGTTGTGAGTAATTAAGTTGTTAATTAGTCTTATTACTCACATGAT</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTAAGCCAGCAAAGCGCCACAATTGGTTGACGGAGGTGTGCCTAAAATTGGGTAATTAACAATCGCTAATAAATATATTTTTACATTTTCAATTAAATATTTCATACAGCGAAGTTCGAGGCCTTTAGCTTGGAACCTTTGTGAGAGCCGCATGCAGGTTTCTAGGGTTTCATCTGAAAAAACCTTATATGTGCTCTTTGAGCTTAATTATCTCGGTTCCTGTAGAAGATGCCAAACATTTGTTAACTGATAAATTGCTTATCATAGTATCACCAATGTTTTATCAGTTGACACTTTATTGATATTTCTTATAGGAACTGAGATAATTGAGCTCAAAGTGACCATACCTGAAATATCCTTAAGCGCTGGACACGGGATACACGACTCCACAAACCACCGGAATTGAGTCGATGGGGTGGGATCAGACATGCTGGATACGTTAACCTTGAAATTATTAGTAATTAAATTTTTAATTAGGATATTTAGGGCAAGAAGTTAAAAAAGTTGTGAGTAATTAAGTTGTTAATTAGTCTTATTACTCACATGATAATCCTTATTGCTTTCCTTGGACCCACTAAGTAGGTCCTTGAAAAATACCGAAGCATGGCAGAGTTGGTGGCGACATAACATGAATCGGGTGGACTAGAAAACGTCATTTTTGAAAATTTTCAACTCCAAAATCAATTCTACAACTCACATTAACCACAATATCAGCTCTGCACCCTTCCAAATGACACTGAGAATTCAGATAATCCATCTGATTGATCACAGCTGTAGACGGACCCATTTTCTTTTGTGGCGACTTTGATTTGCTTTTCAGCTTTCTCTCCTCATTCGATTCTCGTTTCATTTTCCTTGGAGAATGTGATCGAGCCCTCATAAGTGGTCCAGGAACTGGAGCTTCAAATTGTGGAGACTTGGATGGTGGGTAGAAGACGTCGTCGATTTCTCGCGGCTCCGTGTTCCAGGAATGGATTCCGAATGACTCCTGAAATTAT</canonical>
            <polymorphic>AATTAAGCCAGCAAAGCGCCACAATTGGTTGACGGAGGTGTGCCTAAAATTGGGTAATTAACAATCGCTAATAAATATATTTTTACATTTTCAATTAAATATTTCATACAGCGAAGTTCGAGGCCTTTAGCTTGGAACCTTTGTGAGAGCCGCATGCAGGTTTCTAGGGTTTCATCTGAAAAAACCTTATATGTGCTCTTTGAGCTTAATTATCTCGGTTCCTGTAGAAGATGCCAAACATTTGTTAACTGATAAATTGCTTATCATAGTATCACCAATGTTTTATCAGTTGACACTTTATTGATATTTCTTATAGGAACTGAGATAATTGAGCTCAAAGTGACCATACCTGAAATATCCTTAAGCGCTGGACACGGGATACACGACTCCACAAACCACCGGAATTGAGTCGATGGGGTGGGATCAGACATGCTGGATACGTTAACCTTGAAATTATTAGTAATTAAATTTTTAATTAGGATATTTAGGGCAAGAAGTTRAAAAAGTTGTGAGTAATTAAGTTGTTAATTAGTCTTATTACTCACATGATAATCCTTATTGCTTTCCTTGGACCCACTAAGTAGGTCCTTGAAAAATACCGAAGCATGGCAGAGTTGGTGGCGACATAACATGAATCGGGTGGACTAGAAAACGTCATTTTTGAAAATTTTCAACTCCAAAATCAATTCTACAACTCACATTAACCACAATATCAGCTCTGCACCCTTCCAAATGACACTGAGAATTCAGATAATCCATCTGATTGATCACAGCTGTAGACGGACCCATTTTCTTTTGTGGCGACTTTGATTTGCTTTTCAGCTTTCTCTCCTCATTCGATTCTCGTTTCATTTTCCTTGGAGAATGTGATCGAGCCCTCATAAGTGGTCCAGGAACTGGAGCTTCAAATTGTGGAGACTTGGATGGTGGGTAGAAGACGTCGTCGATTTCTCGCGGCTCCGTGTTCCAGGAATGGATTCCGAATGACTCCTGAAATTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>299 176 116 111 81 55 39 37 26 22 19 8 8 3</canonical_bands>
                <polymorphic_bands>299 176 116 111 81 55 45 39 37 22 8 8 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGACATGCTGGATACGTTA</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAAAATGACGTTTTCTAGT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CAGACATGCTGGATACGTTAACCTTGAAATTATTAGTAATTAAATTTTTAATTAGGATATTTAGGGCAAGAAGTTAAAAAAGTTGTGAGTAATTAAGTTGTTAATTAGTCTTATTACTCACATGATAATCCTTATTGCTTTCCTTGGACCCACTAAGTAGGTCCTTGAAAAATACCGAAGCATGGCAGAGTTGGTGGCGACATAACATGAATCGGGTGGACTAGAAAACGTCATTTTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>CAGACATGCTGGATACGTTAACCTTGAAATTATTAGTAATTAAATTTTTAATTAGGATATTTAGGGCAAGAAGTTRAAAAAGTTGTGAGTAATTAAGTTGTTAATTAGTCTTATTACTCACATGATAATCCTTATTGCTTTCCTTGGACCCACTAAGTAGGTCCTTGAAAAATACCGAAGCATGGCAGAGTTGGTGGCGACATAACATGAATCGGGTGGACTAGAAAACGTCATTTTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15984</snp_id>
        <super_contig>c009100934.Contig1</super_contig>
        <contig_pos>95975</contig_pos>
        <strand>+</strand>
        <context>GGAACTTTCC[A/G]AAAGTATCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATCAAAGTGTGGCAGCGATAGATCAAAAACGAATAATGGGAACTTTCC</left_flank>
        <right_flank>AAAGTATCTTATCAAAGTTCTACTTCATATCCCACCACTTCTTATCAGTG</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCAAAAAAAGGATTTTCAGATAATATGCTTTTTACTAGACACTCATCTGACGTTACTGGTATCTCCAATAGCTTATTTTCCGGCACTTCTTGGAGTTTCTCATGGGTTCTATTCGAAAATTTTATCGATTAGGACACATTATCAAATTGTATGTACCTTACTTCGAGCTCAGTTATCTCAGTTCATATGCAAGATATCAAAAATGTGTCAACTGATAAAATATTGGTTTGTGATATTATGATAAACAATTTATTAGTTGACAACTTTTCAATATCTTTGACAGGAACCGAGATAAATTGGCTCAAAGTTGACGGGGCCCTTCTATTGCAGGTGTTTATGTAGATCATTTTTGAAACGAATACGATCTGGAAATTCTTTTTTTCAGAATATAATATTCACCTTGATAGTTCTTCAAATCACCTCTCTCCTGTGCAGTTTTATCAAAAAACATCAAAGTGTGGCAGCGATAGATCAAAAACGAATAATGGGAACTTTCCGAAAGTATCTTATCAAAGTTCTACTTCATATCCCACCACTTCTTATCAGTGTATCATTTGGATTCTCAAATTTGGATAAAGCCGAAGAAATTGAAATAGCCAATGCTGAATATCCAAAACTAGTTCATTTGCTATCCCTACCTAATGCAGAATTGTACTCAACATCGTCTGTTTCCATTAAAATTACATTAGTGATAATGATAGGGACTTTTGTCCTATTTTGTTCGTTATTCCTTTTTTATTACATTCAAATTCTACAAATGCTGCATGGTCATCGGCAATTTATGGCAGCGAGAACTTATTCAAAACATGTTTCAGCAGTTTTGAGTTTGGTGGCACAGGTGAGGAATAATTTCACTTTTTATCTAATTTATCTCATTTCCTATCAAAGATATCAAAAAACTGTCAACTGATAAAATGTTATTGATGTTCTGGTAAACATTTTATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAGATAAATCAGCTTAAAA</canonical>
            <polymorphic>AATCAAAAAAAGGATTTTCAGATAATATGCTTTTTACTAGACACTCATCTGACGTTACTGGTATCTCCAATAGCTTATTTTCCGGCACTTCTTGGAGTTTCTCATGGGTTCTATTCGAAAATTTTATCGATTAGGACACATTATCAAATTGTATGTACCTTACTTCGAGCTCAGTTATCTCAGTTCATATGCAAGATATCAAAAATGTGTCAACTGATAAAATATTGGTTTGTGATATTATGATAAACAATTTATTAGTTGACAACTTTTCAATATCTTTGACAGGAACCGAGATAAATTGGCTCAAAGTTGACGGGGCCCTTCTATTGCAGGTGTTTATGTAGATCATTTTTGAAACGAATACGATCTGGAAATTCTTTTTTTCAGAATATAATATTCACCTTGATAGTTCTTCAAATCACCTCTCTCCTGTGCAGTTTTATCAAAAAACATCAAAGTGTGGCAGCGATAGATCAAAAACGAATAATGGGAACTTTCCRAAAGTATCTTATCAAAGTTCTACTTCATATCCCACCACTTCTTATCAGTGTATCATTTGGATTCTCAAATTTGGATAAAGCCGAAGAAATTGAAATAGCCAATGCTGAATATCCAAAACTAGTTCATTTGCTATCCCTACCTAATGCAGAATTGTACTCAACATCGTCTGTTTCCATTAAAATTACATTAGTGATAATGATAGGGACTTTTGTCCTATTTTGTTCGTTATTCCTTTTTTATTACATTCAAATTCTACAAATGCTGCATGGTCATCGGCAATTTATGGCAGCGAGAACTTATTCAAAACATGTTTCAGCAGTTTTGAGTTTGGTGGCACAGGTGAGGAATAATTTCACTTTTTATCTAATTTATCTCATTTCCTATCAAAGATATCAAAAAACTGTCAACTGATAAAATGTTATTGATGTTCTGGTAAACATTTTATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAGATAAATCAGCTTAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>501 336 113 30 20</canonical_bands>
                <polymorphic_bands>614 336 30 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATAGTTCTTCAAATCACCTCT</pcr_primer_p1>
		<pcr_primer_p2>AATTCTGCATTAGGTAGGGATAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGATAGTTCTTCAAATCACCTCTCTCCTGTGCAGTTTTATCAAAAAACATCAAAGTGTGGCAGCGATAGATCAAAAACGAATAATGGGAACTTTCCGAAAGTATCTTATCAAAGTTCTACTTCATATCCCACCACTTCTTATCAGTGTATCATTTGGATTCTCAAATTTGGATAAAGCCGAAGAAATTGAAATAGCCAATGCTGAATATCCAAAACTAGTTCATTTGCTATCCCTACCTAATGCAGAATT</canonical_amplicon>
		<polymorphic_amplicon>TGATAGTTCTTCAAATCACCTCTCTCCTGTGCAGTTTTATCAAAAAACATCAAAGTGTGGCAGCGATAGATCAAAAACGAATAATGGGAACTTTCCRAAAGTATCTTATCAAAGTTCTACTTCATATCCCACCACTTCTTATCAGTGTATCATTTGGATTCTCAAATTTGGATAAAGCCGAAGAAATTGAAATAGCCAATGCTGAATATCCAAAACTAGTTCATTTGCTATCCCTACCTAATGCAGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15985</snp_id>
        <super_contig>c009100934.Contig1</super_contig>
        <contig_pos>96078</contig_pos>
        <strand>+</strand>
        <context>AAATAGCCAA[G/T]GCTGAATATC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCATTTGGATTCTCAAATTTGGATAAAGCCGAAGAAATTGAAATAGCCAA</left_flank>
        <right_flank>GCTGAATATCCAAAACTAGTTCATTTGCTATCCCTACCTAATGCAGAATT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGGTTCTATTCGAAAATTTTATCGATTAGGACACATTATCAAATTGTATGTACCTTACTTCGAGCTCAGTTATCTCAGTTCATATGCAAGATATCAAAAATGTGTCAACTGATAAAATATTGGTTTGTGATATTATGATAAACAATTTATTAGTTGACAACTTTTCAATATCTTTGACAGGAACCGAGATAAATTGGCTCAAAGTTGACGGGGCCCTTCTATTGCAGGTGTTTATGTAGATCATTTTTGAAACGAATACGATCTGGAAATTCTTTTTTTCAGAATATAATATTCACCTTGATAGTTCTTCAAATCACCTCTCTCCTGTGCAGTTTTATCAAAAAACATCAAAGTGTGGCAGCGATAGATCAAAAACGAATAATGGGAACTTTCCGAAAGTATCTTATCAAAGTTCTACTTCATATCCCACCACTTCTTATCAGTGTATCATTTGGATTCTCAAATTTGGATAAAGCCGAAGAAATTGAAATAGCCAATGCTGAATATCCAAAACTAGTTCATTTGCTATCCCTACCTAATGCAGAATTGTACTCAACATCGTCTGTTTCCATTAAAATTACATTAGTGATAATGATAGGGACTTTTGTCCTATTTTGTTCGTTATTCCTTTTTTATTACATTCAAATTCTACAAATGCTGCATGGTCATCGGCAATTTATGGCAGCGAGAACTTATTCAAAACATGTTTCAGCAGTTTTGAGTTTGGTGGCACAGGTGAGGAATAATTTCACTTTTTATCTAATTTATCTCATTTCCTATCAAAGATATCAAAAAACTGTCAACTGATAAAATGTTATTGATGTTCTGGTAAACATTTTATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAGATAAATCAGCTTAAAATTGGCTACCGTAGCCCAAATGTGGGCCTGGCCAACAAGCTAAACTGCTCGAAAAGCTTATATGAACGAAATTTCGAGAAAATTTTTTTTCCATATCTCCCCCC</canonical>
            <polymorphic>ATGGGTTCTATTCGAAAATTTTATCGATTAGGACACATTATCAAATTGTATGTACCTTACTTCGAGCTCAGTTATCTCAGTTCATATGCAAGATATCAAAAATGTGTCAACTGATAAAATATTGGTTTGTGATATTATGATAAACAATTTATTAGTTGACAACTTTTCAATATCTTTGACAGGAACCGAGATAAATTGGCTCAAAGTTGACGGGGCCCTTCTATTGCAGGTGTTTATGTAGATCATTTTTGAAACGAATACGATCTGGAAATTCTTTTTTTCAGAATATAATATTCACCTTGATAGTTCTTCAAATCACCTCTCTCCTGTGCAGTTTTATCAAAAAACATCAAAGTGTGGCAGCGATAGATCAAAAACGAATAATGGGAACTTTCCGAAAGTATCTTATCAAAGTTCTACTTCATATCCCACCACTTCTTATCAGTGTATCATTTGGATTCTCAAATTTGGATAAAGCCGAAGAAATTGAAATAGCCAAKGCTGAATATCCAAAACTAGTTCATTTGCTATCCCTACCTAATGCAGAATTGTACTCAACATCGTCTGTTTCCATTAAAATTACATTAGTGATAATGATAGGGACTTTTGTCCTATTTTGTTCGTTATTCCTTTTTTATTACATTCAAATTCTACAAATGCTGCATGGTCATCGGCAATTTATGGCAGCGAGAACTTATTCAAAACATGTTTCAGCAGTTTTGAGTTTGGTGGCACAGGTGAGGAATAATTTCACTTTTTATCTAATTTATCTCATTTCCTATCAAAGATATCAAAAAACTGTCAACTGATAAAATGTTATTGATGTTCTGGTAAACATTTTATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAGATAAATCAGCTTAAAATTGGCTACCGTAGCCCAAATGTGGGCCTGGCCAACAAGCTAAACTGCTCGAAAAGCTTATATGAACGAAATTTCGAGAAAATTTTTTTTCCATATCTCCCCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCGATAGATCAAAAACGAATA</pcr_primer_p1>
		<pcr_primer_p2>GACAAAAGTCCCTATCATTATCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCGATAGATCAAAAACGAATAATGGGAACTTTCCGAAAGTATCTTATCAAAGTTCTACTTCATATCCCACCACTTCTTATCAGTGTATCATTTGGATTCTCAAATTTGGATAAAGCCGAAGAAATTGAAATAGCCAATGCTGAATATCCAAAACTAGTTCATTTGCTATCCCTACCTAATGCAGAATTGTACTCAACATCGTCTGTTTCCATTAAAATTACATTAGTGATAATGATAGGGACTTTTGTC</canonical_amplicon>
		<polymorphic_amplicon>AGCGATAGATCAAAAACGAATAATGGGAACTTTCCGAAAGTATCTTATCAAAGTTCTACTTCATATCCCACCACTTCTTATCAGTGTATCATTTGGATTCTCAAATTTGGATAAAGCCGAAGAAATTGAAATAGCCAAKGCTGAATATCCAAAACTAGTTCATTTGCTATCCCTACCTAATGCAGAATTGTACTCAACATCGTCTGTTTCCATTAAAATTACATTAGTGATAATGATAGGGACTTTTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15986</snp_id>
        <super_contig>c009100934.Contig1</super_contig>
        <contig_pos>96099</contig_pos>
        <strand>+</strand>
        <context>CAAAACTAGT[C/T]CATTTGCTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATAAAGCCGAAGAAATTGAAATAGCCAATGCTGAATATCCAAAACTAGT</left_flank>
        <right_flank>CATTTGCTATCCCTACCTAATGCAGAATTGTACTCAACATCGTCTGTTTC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCGATTAGGACACATTATCAAATTGTATGTACCTTACTTCGAGCTCAGTTATCTCAGTTCATATGCAAGATATCAAAAATGTGTCAACTGATAAAATATTGGTTTGTGATATTATGATAAACAATTTATTAGTTGACAACTTTTCAATATCTTTGACAGGAACCGAGATAAATTGGCTCAAAGTTGACGGGGCCCTTCTATTGCAGGTGTTTATGTAGATCATTTTTGAAACGAATACGATCTGGAAATTCTTTTTTTCAGAATATAATATTCACCTTGATAGTTCTTCAAATCACCTCTCTCCTGTGCAGTTTTATCAAAAAACATCAAAGTGTGGCAGCGATAGATCAAAAACGAATAATGGGAACTTTCCGAAAGTATCTTATCAAAGTTCTACTTCATATCCCACCACTTCTTATCAGTGTATCATTTGGATTCTCAAATTTGGATAAAGCCGAAGAAATTGAAATAGCCAATGCTGAATATCCAAAACTAGTTCATTTGCTATCCCTACCTAATGCAGAATTGTACTCAACATCGTCTGTTTCCATTAAAATTACATTAGTGATAATGATAGGGACTTTTGTCCTATTTTGTTCGTTATTCCTTTTTTATTACATTCAAATTCTACAAATGCTGCATGGTCATCGGCAATTTATGGCAGCGAGAACTTATTCAAAACATGTTTCAGCAGTTTTGAGTTTGGTGGCACAGGTGAGGAATAATTTCACTTTTTATCTAATTTATCTCATTTCCTATCAAAGATATCAAAAAACTGTCAACTGATAAAATGTTATTGATGTTCTGGTAAACATTTTATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAGATAAATCAGCTTAAAATTGGCTACCGTAGCCCAAATGTGGGCCTGGCCAACAAGCTAAACTGCTCGAAAAGCTTATATGAACGAAATTTCGAGAAAATTTTTTTTCCATATCTCCCCCCCCCCCCTTCCTCTTAAATTAG</canonical>
            <polymorphic>TATCGATTAGGACACATTATCAAATTGTATGTACCTTACTTCGAGCTCAGTTATCTCAGTTCATATGCAAGATATCAAAAATGTGTCAACTGATAAAATATTGGTTTGTGATATTATGATAAACAATTTATTAGTTGACAACTTTTCAATATCTTTGACAGGAACCGAGATAAATTGGCTCAAAGTTGACGGGGCCCTTCTATTGCAGGTGTTTATGTAGATCATTTTTGAAACGAATACGATCTGGAAATTCTTTTTTTCAGAATATAATATTCACCTTGATAGTTCTTCAAATCACCTCTCTCCTGTGCAGTTTTATCAAAAAACATCAAAGTGTGGCAGCGATAGATCAAAAACGAATAATGGGAACTTTCCGAAAGTATCTTATCAAAGTTCTACTTCATATCCCACCACTTCTTATCAGTGTATCATTTGGATTCTCAAATTTGGATAAAGCCGAAGAAATTGAAATAGCCAATGCTGAATATCCAAAACTAGTYCATTTGCTATCCCTACCTAATGCAGAATTGTACTCAACATCGTCTGTTTCCATTAAAATTACATTAGTGATAATGATAGGGACTTTTGTCCTATTTTGTTCGTTATTCCTTTTTTATTACATTCAAATTCTACAAATGCTGCATGGTCATCGGCAATTTATGGCAGCGAGAACTTATTCAAAACATGTTTCAGCAGTTTTGAGTTTGGTGGCACAGGTGAGGAATAATTTCACTTTTTATCTAATTTATCTCATTTCCTATCAAAGATATCAAAAAACTGTCAACTGATAAAATGTTATTGATGTTCTGGTAAACATTTTATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAGATAAATCAGCTTAAAATTGGCTACCGTAGCCCAAATGTGGGCCTGGCCAACAAGCTAAACTGCTCGAAAAGCTTATATGAACGAAATTTCGAGAAAATTTTTTTTCCATATCTCCCCCCCCCCCCTTCCTCTTAAATTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCGATAGATCAAAAACGAATA</pcr_primer_p1>
		<pcr_primer_p2>GACAAAAGTCCCTATCATTATCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCGATAGATCAAAAACGAATAATGGGAACTTTCCGAAAGTATCTTATCAAAGTTCTACTTCATATCCCACCACTTCTTATCAGTGTATCATTTGGATTCTCAAATTTGGATAAAGCCGAAGAAATTGAAATAGCCAATGCTGAATATCCAAAACTAGTTCATTTGCTATCCCTACCTAATGCAGAATTGTACTCAACATCGTCTGTTTCCATTAAAATTACATTAGTGATAATGATAGGGACTTTTGTC</canonical_amplicon>
		<polymorphic_amplicon>AGCGATAGATCAAAAACGAATAATGGGAACTTTCCGAAAGTATCTTATCAAAGTTCTACTTCATATCCCACCACTTCTTATCAGTGTATCATTTGGATTCTCAAATTTGGATAAAGCCGAAGAAATTGAAATAGCCAATGCTGAATATCCAAAACTAGTYCATTTGCTATCCCTACCTAATGCAGAATTGTACTCAACATCGTCTGTTTCCATTAAAATTACATTAGTGATAATGATAGGGACTTTTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15987</snp_id>
        <super_contig>c009100934.Contig1</super_contig>
        <contig_pos>96245</contig_pos>
        <strand>+</strand>
        <context>ATGCTGCATG[A/G]TCATCGGCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGTTCGTTATTCCTTTTTTATTACATTCAAATTCTACAAATGCTGCATG</left_flank>
        <right_flank>TCATCGGCAATTTATGGCAGCGAGAACTTATTCAAAACATGTTTCAGCAG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATATCTTTGACAGGAACCGAGATAAATTGGCTCAAAGTTGACGGGGCCCTTCTATTGCAGGTGTTTATGTAGATCATTTTTGAAACGAATACGATCTGGAAATTCTTTTTTTCAGAATATAATATTCACCTTGATAGTTCTTCAAATCACCTCTCTCCTGTGCAGTTTTATCAAAAAACATCAAAGTGTGGCAGCGATAGATCAAAAACGAATAATGGGAACTTTCCGAAAGTATCTTATCAAAGTTCTACTTCATATCCCACCACTTCTTATCAGTGTATCATTTGGATTCTCAAATTTGGATAAAGCCGAAGAAATTGAAATAGCCAATGCTGAATATCCAAAACTAGTTCATTTGCTATCCCTACCTAATGCAGAATTGTACTCAACATCGTCTGTTTCCATTAAAATTACATTAGTGATAATGATAGGGACTTTTGTCCTATTTTGTTCGTTATTCCTTTTTTATTACATTCAAATTCTACAAATGCTGCATGGTCATCGGCAATTTATGGCAGCGAGAACTTATTCAAAACATGTTTCAGCAGTTTTGAGTTTGGTGGCACAGGTGAGGAATAATTTCACTTTTTATCTAATTTATCTCATTTCCTATCAAAGATATCAAAAAACTGTCAACTGATAAAATGTTATTGATGTTCTGGTAAACATTTTATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAGATAAATCAGCTTAAAATTGGCTACCGTAGCCCAAATGTGGGCCTGGCCAACAAGCTAAACTGCTCGAAAAGCTTATATGAACGAAATTTCGAGAAAATTTTTTTTCCATATCTCCCCCCCCCCCCTTCCTCTTAAATTAGAGGTTTTACGGTAATTTAACCCATTTTCAGCTAACAGTCCTTGTCATCTGGTTGGCCATCCCTCTAGCTGTTCTGCTTGGCGATGTCATTCTACACATTGAAGGATTCGAAGCATTCTGTAATCTTCTAATTTGTCTATTCTCTAC</canonical>
            <polymorphic>CAATATCTTTGACAGGAACCGAGATAAATTGGCTCAAAGTTGACGGGGCCCTTCTATTGCAGGTGTTTATGTAGATCATTTTTGAAACGAATACGATCTGGAAATTCTTTTTTTCAGAATATAATATTCACCTTGATAGTTCTTCAAATCACCTCTCTCCTGTGCAGTTTTATCAAAAAACATCAAAGTGTGGCAGCGATAGATCAAAAACGAATAATGGGAACTTTCCGAAAGTATCTTATCAAAGTTCTACTTCATATCCCACCACTTCTTATCAGTGTATCATTTGGATTCTCAAATTTGGATAAAGCCGAAGAAATTGAAATAGCCAATGCTGAATATCCAAAACTAGTTCATTTGCTATCCCTACCTAATGCAGAATTGTACTCAACATCGTCTGTTTCCATTAAAATTACATTAGTGATAATGATAGGGACTTTTGTCCTATTTTGTTCGTTATTCCTTTTTTATTACATTCAAATTCTACAAATGCTGCATGRTCATCGGCAATTTATGGCAGCGAGAACTTATTCAAAACATGTTTCAGCAGTTTTGAGTTTGGTGGCACAGGTGAGGAATAATTTCACTTTTTATCTAATTTATCTCATTTCCTATCAAAGATATCAAAAAACTGTCAACTGATAAAATGTTATTGATGTTCTGGTAAACATTTTATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAGATAAATCAGCTTAAAATTGGCTACCGTAGCCCAAATGTGGGCCTGGCCAACAAGCTAAACTGCTCGAAAAGCTTATATGAACGAAATTTCGAGAAAATTTTTTTTCCATATCTCCCCCCCCCCCCTTCCTCTTAAATTAGAGGTTTTACGGTAATTTAACCCATTTTCAGCTAACAGTCCTTGTCATCTGGTTGGCCATCCCTCTAGCTGTTCTGCTTGGCGATGTCATTCTACACATTGAAGGATTCGAAGCATTCTGTAATCTTCTAATTTGTCTATTCTCTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTGTTCGTTATTCCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCGAGCAGTTTAGCTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>337</pcr_amplicon_size>
		<canonical_amplicon>TATTTTGTTCGTTATTCCTTTTTTATTACATTCAAATTCTACAAATGCTGCATGGTCATCGGCAATTTATGGCAGCGAGAACTTATTCAAAACATGTTTCAGCAGTTTTGAGTTTGGTGGCACAGGTGAGGAATAATTTCACTTTTTATCTAATTTATCTCATTTCCTATCAAAGATATCAAAAAACTGTCAACTGATAAAATGTTATTGATGTTCTGGTAAACATTTTATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAGATAAATCAGCTTAAAATTGGCTACCGTAGCCCAAATGTGGGCCTGGCCAACAAGCTAAACTGCTCGAA</canonical_amplicon>
		<polymorphic_amplicon>TATTTTGTTCGTTATTCCTTTTTTATTACATTCAAATTCTACAAATGCTGCATGRTCATCGGCAATTTATGGCAGCGAGAACTTATTCAAAACATGTTTCAGCAGTTTTGAGTTTGGTGGCACAGGTGAGGAATAATTTCACTTTTTATCTAATTTATCTCATTTCCTATCAAAGATATCAAAAAACTGTCAACTGATAAAATGTTATTGATGTTCTGGTAAACATTTTATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAGATAAATCAGCTTAAAATTGGCTACCGTAGCCCAAATGTGGGCCTGGCCAACAAGCTAAACTGCTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15988</snp_id>
        <super_contig>c009100934.Contig1</super_contig>
        <contig_pos>96286</contig_pos>
        <strand>+</strand>
        <context>TTCAAAACAT[G/T]TTTCAGCAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGCTGCATGGTCATCGGCAATTTATGGCAGCGAGAACTTATTCAAAACAT</left_flank>
        <right_flank>TTTCAGCAGTTTTGAGTTTGGTGGCACAGGTGAGGAATAATTTCACTTTT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACGGGGCCCTTCTATTGCAGGTGTTTATGTAGATCATTTTTGAAACGAATACGATCTGGAAATTCTTTTTTTCAGAATATAATATTCACCTTGATAGTTCTTCAAATCACCTCTCTCCTGTGCAGTTTTATCAAAAAACATCAAAGTGTGGCAGCGATAGATCAAAAACGAATAATGGGAACTTTCCGAAAGTATCTTATCAAAGTTCTACTTCATATCCCACCACTTCTTATCAGTGTATCATTTGGATTCTCAAATTTGGATAAAGCCGAAGAAATTGAAATAGCCAATGCTGAATATCCAAAACTAGTTCATTTGCTATCCCTACCTAATGCAGAATTGTACTCAACATCGTCTGTTTCCATTAAAATTACATTAGTGATAATGATAGGGACTTTTGTCCTATTTTGTTCGTTATTCCTTTTTTATTACATTCAAATTCTACAAATGCTGCATGGTCATCGGCAATTTATGGCAGCGAGAACTTATTCAAAACATGTTTCAGCAGTTTTGAGTTTGGTGGCACAGGTGAGGAATAATTTCACTTTTTATCTAATTTATCTCATTTCCTATCAAAGATATCAAAAAACTGTCAACTGATAAAATGTTATTGATGTTCTGGTAAACATTTTATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAGATAAATCAGCTTAAAATTGGCTACCGTAGCCCAAATGTGGGCCTGGCCAACAAGCTAAACTGCTCGAAAAGCTTATATGAACGAAATTTCGAGAAAATTTTTTTTCCATATCTCCCCCCCCCCCCTTCCTCTTAAATTAGAGGTTTTACGGTAATTTAACCCATTTTCAGCTAACAGTCCTTGTCATCTGGTTGGCCATCCCTCTAGCTGTTCTGCTTGGCGATGTCATTCTACACATTGAAGGATTCGAAGCATTCTGTAATCTTCTAATTTGTCTATTCTCTACACACTCTATCATGAGTACCATTGTTATGGTTTTCACATTTC</canonical>
            <polymorphic>GACGGGGCCCTTCTATTGCAGGTGTTTATGTAGATCATTTTTGAAACGAATACGATCTGGAAATTCTTTTTTTCAGAATATAATATTCACCTTGATAGTTCTTCAAATCACCTCTCTCCTGTGCAGTTTTATCAAAAAACATCAAAGTGTGGCAGCGATAGATCAAAAACGAATAATGGGAACTTTCCGAAAGTATCTTATCAAAGTTCTACTTCATATCCCACCACTTCTTATCAGTGTATCATTTGGATTCTCAAATTTGGATAAAGCCGAAGAAATTGAAATAGCCAATGCTGAATATCCAAAACTAGTTCATTTGCTATCCCTACCTAATGCAGAATTGTACTCAACATCGTCTGTTTCCATTAAAATTACATTAGTGATAATGATAGGGACTTTTGTCCTATTTTGTTCGTTATTCCTTTTTTATTACATTCAAATTCTACAAATGCTGCATGGTCATCGGCAATTTATGGCAGCGAGAACTTATTCAAAACATKTTTCAGCAGTTTTGAGTTTGGTGGCACAGGTGAGGAATAATTTCACTTTTTATCTAATTTATCTCATTTCCTATCAAAGATATCAAAAAACTGTCAACTGATAAAATGTTATTGATGTTCTGGTAAACATTTTATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAGATAAATCAGCTTAAAATTGGCTACCGTAGCCCAAATGTGGGCCTGGCCAACAAGCTAAACTGCTCGAAAAGCTTATATGAACGAAATTTCGAGAAAATTTTTTTTCCATATCTCCCCCCCCCCCCTTCCTCTTAAATTAGAGGTTTTACGGTAATTTAACCCATTTTCAGCTAACAGTCCTTGTCATCTGGTTGGCCATCCCTCTAGCTGTTCTGCTTGGCGATGTCATTCTACACATTGAAGGATTCGAAGCATTCTGTAATCTTCTAATTTGTCTATTCTCTACACACTCTATCATGAGTACCATTGTTATGGTTTTCACATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>472 455 42 31</canonical_bands>
                <polymorphic_bands>514 455 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTTTGTTCGTTATTCCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCGAGCAGTTTAGCTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>337</pcr_amplicon_size>
		<canonical_amplicon>TATTTTGTTCGTTATTCCTTTTTTATTACATTCAAATTCTACAAATGCTGCATGGTCATCGGCAATTTATGGCAGCGAGAACTTATTCAAAACATGTTTCAGCAGTTTTGAGTTTGGTGGCACAGGTGAGGAATAATTTCACTTTTTATCTAATTTATCTCATTTCCTATCAAAGATATCAAAAAACTGTCAACTGATAAAATGTTATTGATGTTCTGGTAAACATTTTATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAGATAAATCAGCTTAAAATTGGCTACCGTAGCCCAAATGTGGGCCTGGCCAACAAGCTAAACTGCTCGAA</canonical_amplicon>
		<polymorphic_amplicon>TATTTTGTTCGTTATTCCTTTTTTATTACATTCAAATTCTACAAATGCTGCATGGTCATCGGCAATTTATGGCAGCGAGAACTTATTCAAAACATKTTTCAGCAGTTTTGAGTTTGGTGGCACAGGTGAGGAATAATTTCACTTTTTATCTAATTTATCTCATTTCCTATCAAAGATATCAAAAAACTGTCAACTGATAAAATGTTATTGATGTTCTGGTAAACATTTTATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAGATAAATCAGCTTAAAATTGGCTACCGTAGCCCAAATGTGGGCCTGGCCAACAAGCTAAACTGCTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15989</snp_id>
        <super_contig>c009100934.Contig1</super_contig>
        <contig_pos>96619</contig_pos>
        <strand>+</strand>
        <context>GGTAATTTAA[C/T]CCATTTTCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTCCCCCCCCCCCCTTCCTCTTAAATTAGAGGTTTTACGGTAATTTAA</left_flank>
        <right_flank>CCATTTTCAGCTAACAGTCCTTGTCATCTGGTTGGCCATCCCTCTAGCTG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCAGAATTGTACTCAACATCGTCTGTTTCCATTAAAATTACATTAGTGATAATGATAGGGACTTTTGTCCTATTTTGTTCGTTATTCCTTTTTTATTACATTCAAATTCTACAAATGCTGCATGGTCATCGGCAATTTATGGCAGCGAGAACTTATTCAAAACATGTTTCAGCAGTTTTGAGTTTGGTGGCACAGGTGAGGAATAATTTCACTTTTTATCTAATTTATCTCATTTCCTATCAAAGATATCAAAAAACTGTCAACTGATAAAATGTTATTGATGTTCTGGTAAACATTTTATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAGATAAATCAGCTTAAAATTGGCTACCGTAGCCCAAATGTGGGCCTGGCCAACAAGCTAAACTGCTCGAAAAGCTTATATGAACGAAATTTCGAGAAAATTTTTTTTCCATATCTCCCCCCCCCCCCTTCCTCTTAAATTAGAGGTTTTACGGTAATTTAACCCATTTTCAGCTAACAGTCCTTGTCATCTGGTTGGCCATCCCTCTAGCTGTTCTGCTTGGCGATGTCATTCTACACATTGAAGGATTCGAAGCATTCTGTAATCTTCTAATTTGTCTATTCTCTACACACTCTATCATGAGTACCATTGTTATGGTTTTCACATTTCCAGCTTTTCGACGAGTGGTTTCTTGTAGAGAGAAGTGAGTTTCAAAAACCTCTAATATAAGGGCCCTCCTATTTTGACATTGAGCCAATTCATCTCAGCTCCTGTGAAAGATCAAAAAGCTGTCAACTGATGAATTGTTTATCATCATAACGCAAACATTTTATCAGTTGAGACATTTTGATATCTTGCATAGAAGCGGAGATAAATTAGGTCAAACTTGGAGACCCTTCTATTACAGGTCTTACGGTCTTTTCTTTATGATACACTGATAAATTTGGTAACTTTTCAGACCTATGTTCTCTCCCGCCACTACCATGGTCCAGCCAAGGAAAG</canonical>
            <polymorphic>TGCAGAATTGTACTCAACATCGTCTGTTTCCATTAAAATTACATTAGTGATAATGATAGGGACTTTTGTCCTATTTTGTTCGTTATTCCTTTTTTATTACATTCAAATTCTACAAATGCTGCATGGTCATCGGCAATTTATGGCAGCGAGAACTTATTCAAAACATGTTTCAGCAGTTTTGAGTTTGGTGGCACAGGTGAGGAATAATTTCACTTTTTATCTAATTTATCTCATTTCCTATCAAAGATATCAAAAAACTGTCAACTGATAAAATGTTATTGATGTTCTGGTAAACATTTTATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAGATAAATCAGCTTAAAATTGGCTACCGTAGCCCAAATGTGGGCCTGGCCAACAAGCTAAACTGCTCGAAAAGCTTATATGAACGAAATTTCGAGAAAATTTTTTTTCCATATCTCCCCCCCCCCCCTTCCTCTTAAATTAGAGGTTTTACGGTAATTTAAYCCATTTTCAGCTAACAGTCCTTGTCATCTGGTTGGCCATCCCTCTAGCTGTTCTGCTTGGCGATGTCATTCTACACATTGAAGGATTCGAAGCATTCTGTAATCTTCTAATTTGTCTATTCTCTACACACTCTATCATGAGTACCATTGTTATGGTTTTCACATTTCCAGCTTTTCGACGAGTGGTTTCTTGTAGAGAGAAGTGAGTTTCAAAAACCTCTAATATAAGGGCCCTCCTATTTTGACATTGAGCCAATTCATCTCAGCTCCTGTGAAAGATCAAAAAGCTGTCAACTGATGAATTGTTTATCATCATAACGCAAACATTTTATCAGTTGAGACATTTTGATATCTTGCATAGAAGCGGAGATAAATTAGGTCAAACTTGGAGACCCTTCTATTACAGGTCTTACGGTCTTTTCTTTATGATACACTGATAAATTTGGTAACTTTTCAGACCTATGTTCTCTCCCGCCACTACCATGGTCCAGCCAAGGAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGCTAAACTGCTCGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGATAGAGTGTGTAGAGAATAGACAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAAGCTAAACTGCTCGAAAAGCTTATATGAACGAAATTTCGAGAAAATTTTTTTTCCATATCTCCCCCCCCCCCCTTCCTCTTAAATTAGAGGTTTTACGGTAATTTAACCCATTTTCAGCTAACAGTCCTTGTCATCTGGTTGGCCATCCCTCTAGCTGTTCTGCTTGGCGATGTCATTCTACACATTGAAGGATTCGAAGCATTCTGTAATCTTCTAATTTGTCTATTCTCTACACACTCTATCA</canonical_amplicon>
		<polymorphic_amplicon>CAAGCTAAACTGCTCGAAAAGCTTATATGAACGAAATTTCGAGAAAATTTTTTTTCCATATCTCCCCCCCCCCCCTTCCTCTTAAATTAGAGGTTTTACGGTAATTTAAYCCATTTTCAGCTAACAGTCCTTGTCATCTGGTTGGCCATCCCTCTAGCTGTTCTGCTTGGCGATGTCATTCTACACATTGAAGGATTCGAAGCATTCTGTAATCTTCTAATTTGTCTATTCTCTACACACTCTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15990</snp_id>
        <super_contig>c009100934.Contig1</super_contig>
        <contig_pos>96695</contig_pos>
        <strand>+</strand>
        <context>TCATTCTACA[C/T]ATTGAAGGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTGGTTGGCCATCCCTCTAGCTGTTCTGCTTGGCGATGTCATTCTACA</left_flank>
        <right_flank>ATTGAAGGATTCGAAGCATTCTGTAATCTTCTAATTTGTCTATTCTCTAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTCGTTATTCCTTTTTTATTACATTCAAATTCTACAAATGCTGCATGGTCATCGGCAATTTATGGCAGCGAGAACTTATTCAAAACATGTTTCAGCAGTTTTGAGTTTGGTGGCACAGGTGAGGAATAATTTCACTTTTTATCTAATTTATCTCATTTCCTATCAAAGATATCAAAAAACTGTCAACTGATAAAATGTTATTGATGTTCTGGTAAACATTTTATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAGATAAATCAGCTTAAAATTGGCTACCGTAGCCCAAATGTGGGCCTGGCCAACAAGCTAAACTGCTCGAAAAGCTTATATGAACGAAATTTCGAGAAAATTTTTTTTCCATATCTCCCCCCCCCCCCTTCCTCTTAAATTAGAGGTTTTACGGTAATTTAACCCATTTTCAGCTAACAGTCCTTGTCATCTGGTTGGCCATCCCTCTAGCTGTTCTGCTTGGCGATGTCATTCTACACATTGAAGGATTCGAAGCATTCTGTAATCTTCTAATTTGTCTATTCTCTACACACTCTATCATGAGTACCATTGTTATGGTTTTCACATTTCCAGCTTTTCGACGAGTGGTTTCTTGTAGAGAGAAGTGAGTTTCAAAAACCTCTAATATAAGGGCCCTCCTATTTTGACATTGAGCCAATTCATCTCAGCTCCTGTGAAAGATCAAAAAGCTGTCAACTGATGAATTGTTTATCATCATAACGCAAACATTTTATCAGTTGAGACATTTTGATATCTTGCATAGAAGCGGAGATAAATTAGGTCAAACTTGGAGACCCTTCTATTACAGGTCTTACGGTCTTTTCTTTATGATACACTGATAAATTTGGTAACTTTTCAGACCTATGTTCTCTCCCGCCACTACCATGGTCCAGCCAAGGAAAGGGTTTCAGAATTGATCGGTTTATCGAAAAATAAATTATGTGATTCAATTATAATAGAACAAATCTACACAATGAAT</canonical>
            <polymorphic>TGTTCGTTATTCCTTTTTTATTACATTCAAATTCTACAAATGCTGCATGGTCATCGGCAATTTATGGCAGCGAGAACTTATTCAAAACATGTTTCAGCAGTTTTGAGTTTGGTGGCACAGGTGAGGAATAATTTCACTTTTTATCTAATTTATCTCATTTCCTATCAAAGATATCAAAAAACTGTCAACTGATAAAATGTTATTGATGTTCTGGTAAACATTTTATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAGATAAATCAGCTTAAAATTGGCTACCGTAGCCCAAATGTGGGCCTGGCCAACAAGCTAAACTGCTCGAAAAGCTTATATGAACGAAATTTCGAGAAAATTTTTTTTCCATATCTCCCCCCCCCCCCTTCCTCTTAAATTAGAGGTTTTACGGTAATTTAACCCATTTTCAGCTAACAGTCCTTGTCATCTGGTTGGCCATCCCTCTAGCTGTTCTGCTTGGCGATGTCATTCTACAYATTGAAGGATTCGAAGCATTCTGTAATCTTCTAATTTGTCTATTCTCTACACACTCTATCATGAGTACCATTGTTATGGTTTTCACATTTCCAGCTTTTCGACGAGTGGTTTCTTGTAGAGAGAAGTGAGTTTCAAAAACCTCTAATATAAGGGCCCTCCTATTTTGACATTGAGCCAATTCATCTCAGCTCCTGTGAAAGATCAAAAAGCTGTCAACTGATGAATTGTTTATCATCATAACGCAAACATTTTATCAGTTGAGACATTTTGATATCTTGCATAGAAGCGGAGATAAATTAGGTCAAACTTGGAGACCCTTCTATTACAGGTCTTACGGTCTTTTCTTTATGATACACTGATAAATTTGGTAACTTTTCAGACCTATGTTCTCTCCCGCCACTACCATGGTCCAGCCAAGGAAAGGGTTTCAGAATTGATCGGTTTATCGAAAAATAAATTATGTGATTCAATTATAATAGAACAAATCTACACAATGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>196 159 114 100 69 65 52 50 44 32 27 23 20 17 13 8 6 3 2</canonical_bands>
                <polymorphic_bands>248 159 114 100 69 65 50 44 32 27 23 20 17 13 8 6 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCCCTTCCTCTTAAATTAG</pcr_primer_p1>
		<pcr_primer_p2>CACTTCTCTCTACAAGAAACCAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CCCCCTTCCTCTTAAATTAGAGGTTTTACGGTAATTTAACCCATTTTCAGCTAACAGTCCTTGTCATCTGGTTGGCCATCCCTCTAGCTGTTCTGCTTGGCGATGTCATTCTACACATTGAAGGATTCGAAGCATTCTGTAATCTTCTAATTTGTCTATTCTCTACACACTCTATCATGAGTACCATTGTTATGGTTTTCACATTTCCAGCTTTTCGACGAGTGGTTTCTTGTAGAGAGAAGTG</canonical_amplicon>
		<polymorphic_amplicon>CCCCCTTCCTCTTAAATTAGAGGTTTTACGGTAATTTAACCCATTTTCAGCTAACAGTCCTTGTCATCTGGTTGGCCATCCCTCTAGCTGTTCTGCTTGGCGATGTCATTCTACAYATTGAAGGATTCGAAGCATTCTGTAATCTTCTAATTTGTCTATTCTCTACACACTCTATCATGAGTACCATTGTTATGGTTTTCACATTTCCAGCTTTTCGACGAGTGGTTTCTTGTAGAGAGAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15991</snp_id>
        <super_contig>c009100934.Contig1</super_contig>
        <contig_pos>96791</contig_pos>
        <strand>+</strand>
        <context>CATTTCCAGC[G/T]TTTCGACGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTACACACTCTATCATGAGTACCATTGTTATGGTTTTCACATTTCCAGC</left_flank>
        <right_flank>TTTCGACGAGTGGTTTCTTGTAGAGAGAAGTGAGTTTCAAAAACCTCTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAGTTTTGAGTTTGGTGGCACAGGTGAGGAATAATTTCACTTTTTATCTAATTTATCTCATTTCCTATCAAAGATATCAAAAAACTGTCAACTGATAAAATGTTATTGATGTTCTGGTAAACATTTTATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAGATAAATCAGCTTAAAATTGGCTACCGTAGCCCAAATGTGGGCCTGGCCAACAAGCTAAACTGCTCGAAAAGCTTATATGAACGAAATTTCGAGAAAATTTTTTTTCCATATCTCCCCCCCCCCCCTTCCTCTTAAATTAGAGGTTTTACGGTAATTTAACCCATTTTCAGCTAACAGTCCTTGTCATCTGGTTGGCCATCCCTCTAGCTGTTCTGCTTGGCGATGTCATTCTACACATTGAAGGATTCGAAGCATTCTGTAATCTTCTAATTTGTCTATTCTCTACACACTCTATCATGAGTACCATTGTTATGGTTTTCACATTTCCAGCTTTTCGACGAGTGGTTTCTTGTAGAGAGAAGTGAGTTTCAAAAACCTCTAATATAAGGGCCCTCCTATTTTGACATTGAGCCAATTCATCTCAGCTCCTGTGAAAGATCAAAAAGCTGTCAACTGATGAATTGTTTATCATCATAACGCAAACATTTTATCAGTTGAGACATTTTGATATCTTGCATAGAAGCGGAGATAAATTAGGTCAAACTTGGAGACCCTTCTATTACAGGTCTTACGGTCTTTTCTTTATGATACACTGATAAATTTGGTAACTTTTCAGACCTATGTTCTCTCCCGCCACTACCATGGTCCAGCCAAGGAAAGGGTTTCAGAATTGATCGGTTTATCGAAAAATAAATTATGTGATTCAATTATAATAGAACAAATCTACACAATGAATCAAACGTCTCTAGATCAACATATCAATTTGAGAGAAAACGAAATATGATTACAGATAATCGAGTAAGCGATTCGTCATGAATTCTGAGAAAAAAAA</canonical>
            <polymorphic>GCAGTTTTGAGTTTGGTGGCACAGGTGAGGAATAATTTCACTTTTTATCTAATTTATCTCATTTCCTATCAAAGATATCAAAAAACTGTCAACTGATAAAATGTTATTGATGTTCTGGTAAACATTTTATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAGATAAATCAGCTTAAAATTGGCTACCGTAGCCCAAATGTGGGCCTGGCCAACAAGCTAAACTGCTCGAAAAGCTTATATGAACGAAATTTCGAGAAAATTTTTTTTCCATATCTCCCCCCCCCCCCTTCCTCTTAAATTAGAGGTTTTACGGTAATTTAACCCATTTTCAGCTAACAGTCCTTGTCATCTGGTTGGCCATCCCTCTAGCTGTTCTGCTTGGCGATGTCATTCTACACATTGAAGGATTCGAAGCATTCTGTAATCTTCTAATTTGTCTATTCTCTACACACTCTATCATGAGTACCATTGTTATGGTTTTCACATTTCCAGCKTTTCGACGAGTGGTTTCTTGTAGAGAGAAGTGAGTTTCAAAAACCTCTAATATAAGGGCCCTCCTATTTTGACATTGAGCCAATTCATCTCAGCTCCTGTGAAAGATCAAAAAGCTGTCAACTGATGAATTGTTTATCATCATAACGCAAACATTTTATCAGTTGAGACATTTTGATATCTTGCATAGAAGCGGAGATAAATTAGGTCAAACTTGGAGACCCTTCTATTACAGGTCTTACGGTCTTTTCTTTATGATACACTGATAAATTTGGTAACTTTTCAGACCTATGTTCTCTCCCGCCACTACCATGGTCCAGCCAAGGAAAGGGTTTCAGAATTGATCGGTTTATCGAAAAATAAATTATGTGATTCAATTATAATAGAACAAATCTACACAATGAATCAAACGTCTCTAGATCAACATATCAATTTGAGAGAAAACGAAATATGATTACAGATAATCGAGTAAGCGATTCGTCATGAATTCTGAGAAAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>386 177 123 99 95 45 37 21 17</canonical_bands>
                <polymorphic_bands>386 218 177 99 45 37 21 17</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>204 182 177 123 99 60 25 21 21 17 14 12 12 11 9 8 5</canonical_bands>
                <polymorphic_bands>204 183 182 177 99 25 21 21 17 14 12 12 11 9 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTCTATTCTCTACACACTCTATCA</pcr_primer_p1>
		<pcr_primer_p2>AGTTACCAAATTTATCAGTGTATCAT</pcr_primer_p2>
		<pcr_amplicon_size>339</pcr_amplicon_size>
		<canonical_amplicon>TTGTCTATTCTCTACACACTCTATCATGAGTACCATTGTTATGGTTTTCACATTTCCAGCTTTTCGACGAGTGGTTTCTTGTAGAGAGAAGTGAGTTTCAAAAACCTCTAATATAAGGGCCCTCCTATTTTGACATTGAGCCAATTCATCTCAGCTCCTGTGAAAGATCAAAAAGCTGTCAACTGATGAATTGTTTATCATCATAACGCAAACATTTTATCAGTTGAGACATTTTGATATCTTGCATAGAAGCGGAGATAAATTAGGTCAAACTTGGAGACCCTTCTATTACAGGTCTTACGGTCTTTTCTTTATGATACACTGATAAATTTGGTAACT</canonical_amplicon>
		<polymorphic_amplicon>TTGTCTATTCTCTACACACTCTATCATGAGTACCATTGTTATGGTTTTCACATTTCCAGCKTTTCGACGAGTGGTTTCTTGTAGAGAGAAGTGAGTTTCAAAAACCTCTAATATAAGGGCCCTCCTATTTTGACATTGAGCCAATTCATCTCAGCTCCTGTGAAAGATCAAAAAGCTGTCAACTGATGAATTGTTTATCATCATAACGCAAACATTTTATCAGTTGAGACATTTTGATATCTTGCATAGAAGCGGAGATAAATTAGGTCAAACTTGGAGACCCTTCTATTACAGGTCTTACGGTCTTTTCTTTATGATACACTGATAAATTTGGTAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb15992</snp_id>
        <super_contig>c009100934.Contig1</super_contig>
        <contig_pos>98656</contig_pos>
        <strand>+</strand>
        <context>GACTCACATT[C/T]TATTGGCTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTTTTCTCTTCTTCTTCTTCTTCTTTCCCCTTCCAGTATGACTCACATT</left_flank>
        <right_flank>TATTGGCTTCGGAGACGATTTCCCACTCCTCTTCCTTTTCCAGAATATTT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTTTACAGGGACTGATATAAATTGGCTGAAATTCGGATGATCCGGTCATTCTTTTGGTATTTACAGTATATTTTTGTCAGCTAATTTTCAGATGATAGTATACCCTAAACTTCAATACCATTGTATTATTATCCAAAGTTACGACACTGACCTGTTTCCAGCTGTTCACTATAATATTTCAGTCAACAATAACAACAACAAAAGTTATTTTGTCTGTGATGTTTGGTCTTTTAAATTGAAACCAACAGGTTTATTATTTTTCACTAGAAACACCAGAAGAGGAGAAACTGTCATTTCCAAACCACCTATCCAGGTTAATCCCATCTCTTCTCTCAATGCATATTCATCCATTTCCAGCCATCATACTTTACCATTCATCTCACATCATCGTCATCGTCCTATTCATCCATAATGGTTTTTCTCTCTTCTCCTATTTCTATTTGTCTTCCTTTTCTCTTCTTCTTCTTCTTCTTTCCCCTTCCAGTATGACTCACATTTTATTGGCTTCGGAGACGATTTCCCACTCCTCTTCCTTTTCCAGAATATTTCAGATGACGTCAGTTGGAGTTCACTCTGCTCCAATGATCGTCGTGCACTTTTATGTTTTCTATCCCTCCTCTTCCGTGAGAAGCGAAAAAATATATGGGATCCCCTTCTTCGCTATACGAATACCCATATATTCCATGCGAGGGGTAAAATGGGAAAAACGGAAAACACTTTTTGTTGTCATGTTGTTTTTTGTTGTTCGTTTTCGTTTTTTTTTTGGAAAGAGAACGGAAAAACAAAAAATACGAGGAGTGTCTCGAAAATAGCTACACGATGACAACGACAAGAAGAATCTTCTTGTTGTCATCTGATGTGGAAAAGTGCAGAGAAGTCAGCTGGAAATAGTTAGTACCTGGAACTGAATTGTGCACTTTATATAGTGGATTATGAGGAATAGAAAGGTGAACTATTATAGAATATTCTGAAATTTTGAAATTCTGAAATACTGAAAT</canonical>
            <polymorphic>TCTTTTACAGGGACTGATATAAATTGGCTGAAATTCGGATGATCCGGTCATTCTTTTGGTATTTACAGTATATTTTTGTCAGCTAATTTTCAGATGATAGTATACCCTAAACTTCAATACCATTGTATTATTATCCAAAGTTACGACACTGACCTGTTTCCAGCTGTTCACTATAATATTTCAGTCAACAATAACAACAACAAAAGTTATTTTGTCTGTGATGTTTGGTCTTTTAAATTGAAACCAACAGGTTTATTATTTTTCACTAGAAACACCAGAAGAGGAGAAACTGTCATTTCCAAACCACCTATCCAGGTTAATCCCATCTCTTCTCTCAATGCATATTCATCCATTTCCAGCCATCATACTTTACCATTCATCTCACATCATCGTCATCGTCCTATTCATCCATAATGGTTTTTCTCTCTTCTCCTATTTCTATTTGTCTTCCTTTTCTCTTCTTCTTCTTCTTCTTTCCCCTTCCAGTATGACTCACATTYTATTGGCTTCGGAGACGATTTCCCACTCCTCTTCCTTTTCCAGAATATTTCAGATGACGTCAGTTGGAGTTCACTCTGCTCCAATGATCGTCGTGCACTTTTATGTTTTCTATCCCTCCTCTTCCGTGAGAAGCGAAAAAATATATGGGATCCCCTTCTTCGCTATACGAATACCCATATATTCCATGCGAGGGGTAAAATGGGAAAAACGGAAAACACTTTTTGTTGTCATGTTGTTTTTTGTTGTTCGTTTTCGTTTTTTTTTTGGAAAGAGAACGGAAAAACAAAAAATACGAGGAGTGTCTCGAAAATAGCTACACGATGACAACGACAAGAAGAATCTTCTTGTTGTCATCTGATGTGGAAAAGTGCAGAGAAGTCAGCTGGAAATAGTTAGTACCTGGAACTGAATTGTGCACTTTATATAGTGGATTATGAGGAATAGAAAGGTGAACTATTATAGAATATTCTGAAATTTTGAAATTCTGAAATACTGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTACCATTCATCTCACATCAT</pcr_primer_p1>
		<pcr_primer_p2>AGGGATAGAAAACATAAAAGTGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTACCATTCATCTCACATCATCGTCATCGTCCTATTCATCCATAATGGTTTTTCTCTCTTCTCCTATTTCTATTTGTCTTCCTTTTCTCTTCTTCTTCTTCTTCTTTCCCCTTCCAGTATGACTCACATTTTATTGGCTTCGGAGACGATTTCCCACTCCTCTTCCTTTTCCAGAATATTTCAGATGACGTCAGTTGGAGTTCACTCTGCTCCAATGATCGTCGTGCACTTTTATGTTTTCTATCCCT</canonical_amplicon>
		<polymorphic_amplicon>CTTTACCATTCATCTCACATCATCGTCATCGTCCTATTCATCCATAATGGTTTTTCTCTCTTCTCCTATTTCTATTTGTCTTCCTTTTCTCTTCTTCTTCTTCTTCTTTCCCCTTCCAGTATGACTCACATTYTATTGGCTTCGGAGACGATTTCCCACTCCTCTTCCTTTTCCAGAATATTTCAGATGACGTCAGTTGGAGTTCACTCTGCTCCAATGATCGTCGTGCACTTTTATGTTTTCTATCCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16011</snp_id>
        <super_contig>c009100934.Contig1</super_contig>
        <contig_pos>98613</contig_pos>
        <strand>+</strand>
        <context>cttccttttc[C/T]cttcttcttc</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCCATAATGGTTTTTCTCTCTTCTCCTATTTCTATTTGTCTTCCTTTTC</left_flank>
        <right_flank>CTTCTTCTTCTTCTTCTTTCCCCTTCCAGTATGACTCACATTTTATTGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATATTAAGATAAACATTTAGCCAGTTGACAGATTTTTGATATCTTTTACAGGGACTGATATAAATTGGCTGAAATTCGGATGATCCGGTCATTCTTTTGGTATTTACAGTATATTTTTGTCAGCTAATTTTCAGATGATAGTATACCCTAAACTTCAATACCATTGTATTATTATCCAAAGTTACGACACTGACCTGTTTCCAGCTGTTCACTATAATATTTCAGTCAACAATAACAACAACAAAAGTTATTTTGTCTGTGATGTTTGGTCTTTTAAATTGAAACCAACAGGTTTATTATTTTTCACTAGAAACACCAGAAGAGGAGAAACTGTCATTTCCAAACCACCTATCCAGGTTAATCCCATCTCTTCTCTCAATGCATATTCATCCATTTCCAGCCATCATACTTTACCATTCATCTCACATCATCGTCATCGTCCTATTCATCCATAATGGTTTTTCTCTCTTCTCCTATTTCTATTTGTCTTCCTTTTCTCTTCTTCTTCTTCTTCTTTCCCCTTCCAGTATGACTCACATTTTATTGGCTTCGGAGACGATTTCCCACTCCTCTTCCTTTTCCAGAATATTTCAGATGACGTCAGTTGGAGTTCACTCTGCTCCAATGATCGTCGTGCACTTTTATGTTTTCTATCCCTCCTCTTCCGTGAGAAGCGAAAAAATATATGGGATCCCCTTCTTCGCTATACGAATACCCATATATTCCATGCGAGGGGTAAAATGGGAAAAACGGAAAACACTTTTTGTTGTCATGTTGTTTTTTGTTGTTCGTTTTCGTTTTTTTTTTGGAAAGAGAACGGAAAAACAAAAAATACGAGGAGTGTCTCGAAAATAGCTACACGATGACAACGACAAGAAGAATCTTCTTGTTGTCATCTGATGTGGAAAAGTGCAGAGAAGTCAGCTGGAAATAGTTAGTACCTGGAACTGAATTGTGCACTTTATATAGTGGATTATGAGGAATAGAAAGGTGAACTA</canonical>
            <polymorphic>TGATATTAAGATAAACATTTAGCCAGTTGACAGATTTTTGATATCTTTTACAGGGACTGATATAAATTGGCTGAAATTCGGATGATCCGGTCATTCTTTTGGTATTTACAGTATATTTTTGTCAGCTAATTTTCAGATGATAGTATACCCTAAACTTCAATACCATTGTATTATTATCCAAAGTTACGACACTGACCTGTTTCCAGCTGTTCACTATAATATTTCAGTCAACAATAACAACAACAAAAGTTATTTTGTCTGTGATGTTTGGTCTTTTAAATTGAAACCAACAGGTTTATTATTTTTCACTAGAAACACCAGAAGAGGAGAAACTGTCATTTCCAAACCACCTATCCAGGTTAATCCCATCTCTTCTCTCAATGCATATTCATCCATTTCCAGCCATCATACTTTACCATTCATCTCACATCATCGTCATCGTCCTATTCATCCATAATGGTTTTTCTCTCTTCTCCTATTTCTATTTGTCTTCCTTTTCYCTTCTTCTTCTTCTTCTTTCCCCTTCCAGTATGACTCACATTTTATTGGCTTCGGAGACGATTTCCCACTCCTCTTCCTTTTCCAGAATATTTCAGATGACGTCAGTTGGAGTTCACTCTGCTCCAATGATCGTCGTGCACTTTTATGTTTTCTATCCCTCCTCTTCCGTGAGAAGCGAAAAAATATATGGGATCCCCTTCTTCGCTATACGAATACCCATATATTCCATGCGAGGGGTAAAATGGGAAAAACGGAAAACACTTTTTGTTGTCATGTTGTTTTTTGTTGTTCGTTTTCGTTTTTTTTTTGGAAAGAGAACGGAAAAACAAAAAATACGAGGAGTGTCTCGAAAATAGCTACACGATGACAACGACAAGAAGAATCTTCTTGTTGTCATCTGATGTGGAAAAGTGCAGAGAAGTCAGCTGGAAATAGTTAGTACCTGGAACTGAATTGTGCACTTTATATAGTGGATTATGAGGAATAGAAAGGTGAACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTACCATTCATCTCACATCAT</pcr_primer_p1>
		<pcr_primer_p2>AGGGATAGAAAACATAAAAGTGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTACCATTCATCTCACATCATCGTCATCGTCCTATTCATCCATAATGGTTTTTCTCTCTTCTCCTATTTCTATTTGTCTTCCTTTTCTCTTCTTCTTCTTCTTCTTTCCCCTTCCAGTATGACTCACATTTTATTGGCTTCGGAGACGATTTCCCACTCCTCTTCCTTTTCCAGAATATTTCAGATGACGTCAGTTGGAGTTCACTCTGCTCCAATGATCGTCGTGCACTTTTATGTTTTCTATCCCT</canonical_amplicon>
		<polymorphic_amplicon>CTTTACCATTCATCTCACATCATCGTCATCGTCCTATTCATCCATAATGGTTTTTCTCTCTTCTCCTATTTCTATTTGTCTTCCTTTTCYCTTCTTCTTCTTCTTCTTTCCCCTTCCAGTATGACTCACATTTTATTGGCTTCGGAGACGATTTCCCACTCCTCTTCCTTTTCCAGAATATTTCAGATGACGTCAGTTGGAGTTCACTCTGCTCCAATGATCGTCGTGCACTTTTATGTTTTCTATCCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16017</snp_id>
        <super_contig>c009100934.Contig1</super_contig>
        <contig_pos>98492</contig_pos>
        <strand>+</strand>
        <context>TCTCTTCTCT[C/T]AATGCATATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAACTGTCATTTCCAAACCACCTATCCAGGTTAATCCCATCTCTTCTCT</left_flank>
        <right_flank>AATGCATATTCATCCATTTCCAGCCATCATACTTTACCATTCATCTCACA</right_flank>
        <qual_score>149</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTAACCAAGAAAAAAGTGGTCAAAGTTGACTAGACCGCACACTCTAACTTTTAAGTTTGAGCCAATTTATCTCGGTCCCTGTAAAAGGTATCAAAAAGTGGTCAACTGACAAAGTGTTGTTGATATTAAGATAAACATTTAGCCAGTTGACAGATTTTTGATATCTTTTACAGGGACTGATATAAATTGGCTGAAATTCGGATGATCCGGTCATTCTTTTGGTATTTACAGTATATTTTTGTCAGCTAATTTTCAGATGATAGTATACCCTAAACTTCAATACCATTGTATTATTATCCAAAGTTACGACACTGACCTGTTTCCAGCTGTTCACTATAATATTTCAGTCAACAATAACAACAACAAAAGTTATTTTGTCTGTGATGTTTGGTCTTTTAAATTGAAACCAACAGGTTTATTATTTTTCACTAGAAACACCAGAAGAGGAGAAACTGTCATTTCCAAACCACCTATCCAGGTTAATCCCATCTCTTCTCTCAATGCATATTCATCCATTTCCAGCCATCATACTTTACCATTCATCTCACATCATCGTCATCGTCCTATTCATCCATAATGGTTTTTCTCTCTTCTCCTATTTCTATTTGTCTTCCTTTTCTCTTCTTCTTCTTCTTCTTTCCCCTTCCAGTATGACTCACATTTTATTGGCTTCGGAGACGATTTCCCACTCCTCTTCCTTTTCCAGAATATTTCAGATGACGTCAGTTGGAGTTCACTCTGCTCCAATGATCGTCGTGCACTTTTATGTTTTCTATCCCTCCTCTTCCGTGAGAAGCGAAAAAATATATGGGATCCCCTTCTTCGCTATACGAATACCCATATATTCCATGCGAGGGGTAAAATGGGAAAAACGGAAAACACTTTTTGTTGTCATGTTGTTTTTTGTTGTTCGTTTTCGTTTTTTTTTTGGAAAGAGAACGGAAAAACAAAAAATACGAGGAGTGTCTCGAAAATAGCTACACGATGACAACGACAAGA</canonical>
            <polymorphic>AGTAACCAAGAAAAAAGTGGTCAAAGTTGACTAGACCGCACACTCTAACTTTTAAGTTTGAGCCAATTTATCTCGGTCCCTGTAAAAGGTATCAAAAAGTGGTCAACTGACAAAGTGTTGTTGATATTAAGATAAACATTTAGCCAGTTGACAGATTTTTGATATCTTTTACAGGGACTGATATAAATTGGCTGAAATTCGGATGATCCGGTCATTCTTTTGGTATTTACAGTATATTTTTGTCAGCTAATTTTCAGATGATAGTATACCCTAAACTTCAATACCATTGTATTATTATCCAAAGTTACGACACTGACCTGTTTCCAGCTGTTCACTATAATATTTCAGTCAACAATAACAACAACAAAAGTTATTTTGTCTGTGATGTTTGGTCTTTTAAATTGAAACCAACAGGTTTATTATTTTTCACTAGAAACACCAGAAGAGGAGAAACTGTCATTTCCAAACCACCTATCCAGGTTAATCCCATCTCTTCTCTYAATGCATATTCATCCATTTCCAGCCATCATACTTTACCATTCATCTCACATCATCGTCATCGTCCTATTCATCCATAATGGTTTTTCTCTCTTCTCCTATTTCTATTTGTCTTCCTTTTCTCTTCTTCTTCTTCTTCTTTCCCCTTCCAGTATGACTCACATTTTATTGGCTTCGGAGACGATTTCCCACTCCTCTTCCTTTTCCAGAATATTTCAGATGACGTCAGTTGGAGTTCACTCTGCTCCAATGATCGTCGTGCACTTTTATGTTTTCTATCCCTCCTCTTCCGTGAGAAGCGAAAAAATATATGGGATCCCCTTCTTCGCTATACGAATACCCATATATTCCATGCGAGGGGTAAAATGGGAAAAACGGAAAACACTTTTTGTTGTCATGTTGTTTTTTGTTGTTCGTTTTCGTTTTTTTTTTGGAAAGAGAACGGAAAAACAAAAAATACGAGGAGTGTCTCGAAAATAGCTACACGATGACAACGACAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAACAATAACAACAACAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GGAGAAGAGAGAAAAACCATTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCAACAATAACAACAACAAAAGTTATTTTGTCTGTGATGTTTGGTCTTTTAAATTGAAACCAACAGGTTTATTATTTTTCACTAGAAACACCAGAAGAGGAGAAACTGTCATTTCCAAACCACCTATCCAGGTTAATCCCATCTCTTCTCTCAATGCATATTCATCCATTTCCAGCCATCATACTTTACCATTCATCTCACATCATCGTCATCGTCCTATTCATCCATAATGGTTTTTCTCTCTTCTCC</canonical_amplicon>
		<polymorphic_amplicon>GTCAACAATAACAACAACAAAAGTTATTTTGTCTGTGATGTTTGGTCTTTTAAATTGAAACCAACAGGTTTATTATTTTTCACTAGAAACACCAGAAGAGGAGAAACTGTCATTTCCAAACCACCTATCCAGGTTAATCCCATCTCTTCTCTYAATGCATATTCATCCATTTCCAGCCATCATACTTTACCATTCATCTCACATCATCGTCATCGTCCTATTCATCCATAATGGTTTTTCTCTCTTCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16018</snp_id>
        <super_contig>c009100934.Contig1</super_contig>
        <contig_pos>98480</contig_pos>
        <strand>+</strand>
        <context>AGGTTAATCC[C/T]ATCTCTTCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCAGAAGAGGAGAAACTGTCATTTCCAAACCACCTATCCAGGTTAATCC</left_flank>
        <right_flank>ATCTCTTCTCTCAATGCATATTCATCCATTTCCAGCCATCATACTTTACC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATATCTTTTTCAGTAACCAAGAAAAAAGTGGTCAAAGTTGACTAGACCGCACACTCTAACTTTTAAGTTTGAGCCAATTTATCTCGGTCCCTGTAAAAGGTATCAAAAAGTGGTCAACTGACAAAGTGTTGTTGATATTAAGATAAACATTTAGCCAGTTGACAGATTTTTGATATCTTTTACAGGGACTGATATAAATTGGCTGAAATTCGGATGATCCGGTCATTCTTTTGGTATTTACAGTATATTTTTGTCAGCTAATTTTCAGATGATAGTATACCCTAAACTTCAATACCATTGTATTATTATCCAAAGTTACGACACTGACCTGTTTCCAGCTGTTCACTATAATATTTCAGTCAACAATAACAACAACAAAAGTTATTTTGTCTGTGATGTTTGGTCTTTTAAATTGAAACCAACAGGTTTATTATTTTTCACTAGAAACACCAGAAGAGGAGAAACTGTCATTTCCAAACCACCTATCCAGGTTAATCCCATCTCTTCTCTCAATGCATATTCATCCATTTCCAGCCATCATACTTTACCATTCATCTCACATCATCGTCATCGTCCTATTCATCCATAATGGTTTTTCTCTCTTCTCCTATTTCTATTTGTCTTCCTTTTCTCTTCTTCTTCTTCTTCTTTCCCCTTCCAGTATGACTCACATTTTATTGGCTTCGGAGACGATTTCCCACTCCTCTTCCTTTTCCAGAATATTTCAGATGACGTCAGTTGGAGTTCACTCTGCTCCAATGATCGTCGTGCACTTTTATGTTTTCTATCCCTCCTCTTCCGTGAGAAGCGAAAAAATATATGGGATCCCCTTCTTCGCTATACGAATACCCATATATTCCATGCGAGGGGTAAAATGGGAAAAACGGAAAACACTTTTTGTTGTCATGTTGTTTTTTGTTGTTCGTTTTCGTTTTTTTTTTGGAAAGAGAACGGAAAAACAAAAAATACGAGGAGTGTCTCGAAAATAGCTACACGATG</canonical>
            <polymorphic>GATATCTTTTTCAGTAACCAAGAAAAAAGTGGTCAAAGTTGACTAGACCGCACACTCTAACTTTTAAGTTTGAGCCAATTTATCTCGGTCCCTGTAAAAGGTATCAAAAAGTGGTCAACTGACAAAGTGTTGTTGATATTAAGATAAACATTTAGCCAGTTGACAGATTTTTGATATCTTTTACAGGGACTGATATAAATTGGCTGAAATTCGGATGATCCGGTCATTCTTTTGGTATTTACAGTATATTTTTGTCAGCTAATTTTCAGATGATAGTATACCCTAAACTTCAATACCATTGTATTATTATCCAAAGTTACGACACTGACCTGTTTCCAGCTGTTCACTATAATATTTCAGTCAACAATAACAACAACAAAAGTTATTTTGTCTGTGATGTTTGGTCTTTTAAATTGAAACCAACAGGTTTATTATTTTTCACTAGAAACACCAGAAGAGGAGAAACTGTCATTTCCAAACCACCTATCCAGGTTAATCCYATCTCTTCTCTCAATGCATATTCATCCATTTCCAGCCATCATACTTTACCATTCATCTCACATCATCGTCATCGTCCTATTCATCCATAATGGTTTTTCTCTCTTCTCCTATTTCTATTTGTCTTCCTTTTCTCTTCTTCTTCTTCTTCTTTCCCCTTCCAGTATGACTCACATTTTATTGGCTTCGGAGACGATTTCCCACTCCTCTTCCTTTTCCAGAATATTTCAGATGACGTCAGTTGGAGTTCACTCTGCTCCAATGATCGTCGTGCACTTTTATGTTTTCTATCCCTCCTCTTCCGTGAGAAGCGAAAAAATATATGGGATCCCCTTCTTCGCTATACGAATACCCATATATTCCATGCGAGGGGTAAAATGGGAAAAACGGAAAACACTTTTTGTTGTCATGTTGTTTTTTGTTGTTCGTTTTCGTTTTTTTTTTGGAAAGAGAACGGAAAAACAAAAAATACGAGGAGTGTCTCGAAAATAGCTACACGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAACAATAACAACAACAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GGAGAAGAGAGAAAAACCATTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCAACAATAACAACAACAAAAGTTATTTTGTCTGTGATGTTTGGTCTTTTAAATTGAAACCAACAGGTTTATTATTTTTCACTAGAAACACCAGAAGAGGAGAAACTGTCATTTCCAAACCACCTATCCAGGTTAATCCCATCTCTTCTCTCAATGCATATTCATCCATTTCCAGCCATCATACTTTACCATTCATCTCACATCATCGTCATCGTCCTATTCATCCATAATGGTTTTTCTCTCTTCTCC</canonical_amplicon>
		<polymorphic_amplicon>GTCAACAATAACAACAACAAAAGTTATTTTGTCTGTGATGTTTGGTCTTTTAAATTGAAACCAACAGGTTTATTATTTTTCACTAGAAACACCAGAAGAGGAGAAACTGTCATTTCCAAACCACCTATCCAGGTTAATCCYATCTCTTCTCTCAATGCATATTCATCCATTTCCAGCCATCATACTTTACCATTCATCTCACATCATCGTCATCGTCCTATTCATCCATAATGGTTTTTCTCTCTTCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16019</snp_id>
        <super_contig>c009100934.Contig1</super_contig>
        <contig_pos>98427</contig_pos>
        <strand>+</strand>
        <context>TTTCACTAGA[A/T]ACACCAGAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGTTTGGTCTTTTAAATTGAAACCAACAGGTTTATTATTTTTCACTAGA</left_flank>
        <right_flank>ACACCAGAAGAGGAGAAACTGTCATTTCCAAACCACCTATCCAGGTTAAT</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATAAAATATTTATCATAATACCAACTACATTATGTTAGTTGACCCTTTTTTGATATCTTTTTCAGTAACCAAGAAAAAAGTGGTCAAAGTTGACTAGACCGCACACTCTAACTTTTAAGTTTGAGCCAATTTATCTCGGTCCCTGTAAAAGGTATCAAAAAGTGGTCAACTGACAAAGTGTTGTTGATATTAAGATAAACATTTAGCCAGTTGACAGATTTTTGATATCTTTTACAGGGACTGATATAAATTGGCTGAAATTCGGATGATCCGGTCATTCTTTTGGTATTTACAGTATATTTTTGTCAGCTAATTTTCAGATGATAGTATACCCTAAACTTCAATACCATTGTATTATTATCCAAAGTTACGACACTGACCTGTTTCCAGCTGTTCACTATAATATTTCAGTCAACAATAACAACAACAAAAGTTATTTTGTCTGTGATGTTTGGTCTTTTAAATTGAAACCAACAGGTTTATTATTTTTCACTAGAAACACCAGAAGAGGAGAAACTGTCATTTCCAAACCACCTATCCAGGTTAATCCCATCTCTTCTCTCAATGCATATTCATCCATTTCCAGCCATCATACTTTACCATTCATCTCACATCATCGTCATCGTCCTATTCATCCATAATGGTTTTTCTCTCTTCTCCTATTTCTATTTGTCTTCCTTTTCTCTTCTTCTTCTTCTTCTTTCCCCTTCCAGTATGACTCACATTTTATTGGCTTCGGAGACGATTTCCCACTCCTCTTCCTTTTCCAGAATATTTCAGATGACGTCAGTTGGAGTTCACTCTGCTCCAATGATCGTCGTGCACTTTTATGTTTTCTATCCCTCCTCTTCCGTGAGAAGCGAAAAAATATATGGGATCCCCTTCTTCGCTATACGAATACCCATATATTCCATGCGAGGGGTAAAATGGGAAAAACGGAAAACACTTTTTGTTGTCATGTTGTTTTTTGTTGTTCGTTTTCGTTTTTTTTTTGGAAA</canonical>
            <polymorphic>TGATAAAATATTTATCATAATACCAACTACATTATGTTAGTTGACCCTTTTTTGATATCTTTTTCAGTAACCAAGAAAAAAGTGGTCAAAGTTGACTAGACCGCACACTCTAACTTTTAAGTTTGAGCCAATTTATCTCGGTCCCTGTAAAAGGTATCAAAAAGTGGTCAACTGACAAAGTGTTGTTGATATTAAGATAAACATTTAGCCAGTTGACAGATTTTTGATATCTTTTACAGGGACTGATATAAATTGGCTGAAATTCGGATGATCCGGTCATTCTTTTGGTATTTACAGTATATTTTTGTCAGCTAATTTTCAGATGATAGTATACCCTAAACTTCAATACCATTGTATTATTATCCAAAGTTACGACACTGACCTGTTTCCAGCTGTTCACTATAATATTTCAGTCAACAATAACAACAACAAAAGTTATTTTGTCTGTGATGTTTGGTCTTTTAAATTGAAACCAACAGGTTTATTATTTTTCACTAGAWACACCAGAAGAGGAGAAACTGTCATTTCCAAACCACCTATCCAGGTTAATCCCATCTCTTCTCTCAATGCATATTCATCCATTTCCAGCCATCATACTTTACCATTCATCTCACATCATCGTCATCGTCCTATTCATCCATAATGGTTTTTCTCTCTTCTCCTATTTCTATTTGTCTTCCTTTTCTCTTCTTCTTCTTCTTCTTTCCCCTTCCAGTATGACTCACATTTTATTGGCTTCGGAGACGATTTCCCACTCCTCTTCCTTTTCCAGAATATTTCAGATGACGTCAGTTGGAGTTCACTCTGCTCCAATGATCGTCGTGCACTTTTATGTTTTCTATCCCTCCTCTTCCGTGAGAAGCGAAAAAATATATGGGATCCCCTTCTTCGCTATACGAATACCCATATATTCCATGCGAGGGGTAAAATGGGAAAAACGGAAAACACTTTTTGTTGTCATGTTGTTTTTTGTTGTTCGTTTTCGTTTTTTTTTTGGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAACAATAACAACAACAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GGAGAAGAGAGAAAAACCATTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCAACAATAACAACAACAAAAGTTATTTTGTCTGTGATGTTTGGTCTTTTAAATTGAAACCAACAGGTTTATTATTTTTCACTAGAAACACCAGAAGAGGAGAAACTGTCATTTCCAAACCACCTATCCAGGTTAATCCCATCTCTTCTCTCAATGCATATTCATCCATTTCCAGCCATCATACTTTACCATTCATCTCACATCATCGTCATCGTCCTATTCATCCATAATGGTTTTTCTCTCTTCTCC</canonical_amplicon>
		<polymorphic_amplicon>GTCAACAATAACAACAACAAAAGTTATTTTGTCTGTGATGTTTGGTCTTTTAAATTGAAACCAACAGGTTTATTATTTTTCACTAGAWACACCAGAAGAGGAGAAACTGTCATTTCCAAACCACCTATCCAGGTTAATCCCATCTCTTCTCTCAATGCATATTCATCCATTTCCAGCCATCATACTTTACCATTCATCTCACATCATCGTCATCGTCCTATTCATCCATAATGGTTTTTCTCTCTTCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16020</snp_id>
        <super_contig>c009100934.Contig1</super_contig>
        <contig_pos>98204</contig_pos>
        <strand>+</strand>
        <context>GATGATCCGG[C/T]CATTCTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATATCTTTTACAGGGACTGATATAAATTGGCTGAAATTCGGATGATCCGG</left_flank>
        <right_flank>CATTCTTTTGGTATTTACAGTATATTTTTGTCAGCTAATTTTCAGATGAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGGACATGGAAGGTCATTACCAATTCACGTAGCTTTTTTGTCTAATATTAAATTTTTCATAAGCTTTTTTGACACGTGCATTTTTTAAGAAAGTTTTTTCACCACGTTCAATTGATAATAGAAATTTGGCTCCGAAATTTGTGAAACCCACTAAAAAGATTGCCACTTTGAGATCAATTATCTCGGTCCCAGTGATAGATATCAAATATGTAGTAGTCAACTGATAAAATATTTATCATAATACCAACTACATTATGTTAGTTGACCCTTTTTTGATATCTTTTTCAGTAACCAAGAAAAAAGTGGTCAAAGTTGACTAGACCGCACACTCTAACTTTTAAGTTTGAGCCAATTTATCTCGGTCCCTGTAAAAGGTATCAAAAAGTGGTCAACTGACAAAGTGTTGTTGATATTAAGATAAACATTTAGCCAGTTGACAGATTTTTGATATCTTTTACAGGGACTGATATAAATTGGCTGAAATTCGGATGATCCGGTCATTCTTTTGGTATTTACAGTATATTTTTGTCAGCTAATTTTCAGATGATAGTATACCCTAAACTTCAATACCATTGTATTATTATCCAAAGTTACGACACTGACCTGTTTCCAGCTGTTCACTATAATATTTCAGTCAACAATAACAACAACAAAAGTTATTTTGTCTGTGATGTTTGGTCTTTTAAATTGAAACCAACAGGTTTATTATTTTTCACTAGAAACACCAGAAGAGGAGAAACTGTCATTTCCAAACCACCTATCCAGGTTAATCCCATCTCTTCTCTCAATGCATATTCATCCATTTCCAGCCATCATACTTTACCATTCATCTCACATCATCGTCATCGTCCTATTCATCCATAATGGTTTTTCTCTCTTCTCCTATTTCTATTTGTCTTCCTTTTCTCTTCTTCTTCTTCTTCTTTCCCCTTCCAGTATGACTCACATTTTATTGGCTTCGGAGACGATTTCCCACTCCTCTTCCTTTTCCAGAATAT</canonical>
            <polymorphic>ATGGGACATGGAAGGTCATTACCAATTCACGTAGCTTTTTTGTCTAATATTAAATTTTTCATAAGCTTTTTTGACACGTGCATTTTTTAAGAAAGTTTTTTCACCACGTTCAATTGATAATAGAAATTTGGCTCCGAAATTTGTGAAACCCACTAAAAAGATTGCCACTTTGAGATCAATTATCTCGGTCCCAGTGATAGATATCAAATATGTAGTAGTCAACTGATAAAATATTTATCATAATACCAACTACATTATGTTAGTTGACCCTTTTTTGATATCTTTTTCAGTAACCAAGAAAAAAGTGGTCAAAGTTGACTAGACCGCACACTCTAACTTTTAAGTTTGAGCCAATTTATCTCGGTCCCTGTAAAAGGTATCAAAAAGTGGTCAACTGACAAAGTGTTGTTGATATTAAGATAAACATTTAGCCAGTTGACAGATTTTTGATATCTTTTACAGGGACTGATATAAATTGGCTGAAATTCGGATGATCCGGYCATTCTTTTGGTATTTACAGTATATTTTTGTCAGCTAATTTTCAGATGATAGTATACCCTAAACTTCAATACCATTGTATTATTATCCAAAGTTACGACACTGACCTGTTTCCAGCTGTTCACTATAATATTTCAGTCAACAATAACAACAACAAAAGTTATTTTGTCTGTGATGTTTGGTCTTTTAAATTGAAACCAACAGGTTTATTATTTTTCACTAGAAACACCAGAAGAGGAGAAACTGTCATTTCCAAACCACCTATCCAGGTTAATCCCATCTCTTCTCTCAATGCATATTCATCCATTTCCAGCCATCATACTTTACCATTCATCTCACATCATCGTCATCGTCCTATTCATCCATAATGGTTTTTCTCTCTTCTCCTATTTCTATTTGTCTTCCTTTTCTCTTCTTCTTCTTCTTCTTTCCCCTTCCAGTATGACTCACATTTTATTGGCTTCGGAGACGATTTCCCACTCCTCTTCCTTTTCCAGAATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCATTACCAATTCACGTAGC</pcr_primer_p1>
		<pcr_primer_p2>GTTTAGGGTATACTATCATCTGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>550</pcr_amplicon_size>
		<canonical_amplicon>GTCATTACCAATTCACGTAGCTTTTTTGTCTAATATTAAATTTTTCATAAGCTTTTTTGACACGTGCATTTTTTAAGAAAGTTTTTTCACCACGTTCAATTGATAATAGAAATTTGGCTCCGAAATTTGTGAAACCCACTAAAAAGATTGCCACTTTGAGATCAATTATCTCGGTCCCAGTGATAGATATCAAATATGTAGTAGTCAACTGATAAAATATTTATCATAATACCAACTACATTATGTTAGTTGACCCTTTTTTGATATCTTTTTCAGTAACCAAGAAAAAAGTGGTCAAAGTTGACTAGACCGCACACTCTAACTTTTAAGTTTGAGCCAATTTATCTCGGTCCCTGTAAAAGGTATCAAAAAGTGGTCAACTGACAAAGTGTTGTTGATATTAAGATAAACATTTAGCCAGTTGACAGATTTTTGATATCTTTTACAGGGACTGATATAAATTGGCTGAAATTCGGATGATCCGGTCATTCTTTTGGTATTTACAGTATATTTTTGTCAGCTAATTTTCAGATGATAGTATACCCTAAAC</canonical_amplicon>
		<polymorphic_amplicon>GTCATTACCAATTCACGTAGCTTTTTTGTCTAATATTAAATTTTTCATAAGCTTTTTTGACACGTGCATTTTTTAAGAAAGTTTTTTCACCACGTTCAATTGATAATAGAAATTTGGCTCCGAAATTTGTGAAACCCACTAAAAAGATTGCCACTTTGAGATCAATTATCTCGGTCCCAGTGATAGATATCAAATATGTAGTAGTCAACTGATAAAATATTTATCATAATACCAACTACATTATGTTAGTTGACCCTTTTTTGATATCTTTTTCAGTAACCAAGAAAAAAGTGGTCAAAGTTGACTAGACCGCACACTCTAACTTTTAAGTTTGAGCCAATTTATCTCGGTCCCTGTAAAAGGTATCAAAAAGTGGTCAACTGACAAAGTGTTGTTGATATTAAGATAAACATTTAGCCAGTTGACAGATTTTTGATATCTTTTACAGGGACTGATATAAATTGGCTGAAATTCGGATGATCCGGYCATTCTTTTGGTATTTACAGTATATTTTTGTCAGCTAATTTTCAGATGATAGTATACCCTAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16049</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>48009</contig_pos>
        <strand>+</strand>
        <context>ATTTTCTATC[C/T]ACCTGAYAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAATCTTCTTAATTTAAAGTTCAAATTACTGCTAAAGACATTTTCTATC</left_flank>
        <right_flank>ACCTGACAATTAAACTAAAGCCCACTAACCAATAGAATAACTGAAATTGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTATAGCTCTTCGAAAAATTCAATAAATCGAAAATTTCATTTTTGGCACTGTTTAGTATTTTAGCCATAACTCGGCTCAAAATGCTCCGATATTTCTGAGTTTTAGACTTAATTGAAGCTAGACAAAAATTCTACAGGTTTACACAAAGTTTATAGCATTGATCCAAGCATTAGATTACTGTAAATCTTTTCGAAAAGTTAAATATGTCGAAATTTTTAATTTTTCGGAACTACTTCTTATTTTCACTATATTTTAGCTCAAAATTCTTCAATCTTTGTAGATTTTGGACCCAATTACATTTAGAAAAAAATAAACAAAATACATTTAAATTCAATGCATTATCGCAAAAATTAGATTACTGTAACCCCCTTTGAAGTCTCAACAAATCCGAATTTTTCATTTTTTGGCATTGTTTCTTATTTTAGCCATAACTCGGCTCAATATGCTTCAATCTTCTTAATTTAAAGTTCAAATTACTGCTAAAGACATTTTCTATCTACCTGACAATTAAACTAAAGCCCACTAACCAATAGAATAACTGAAATTGAATCCCATCGCTTGTCTGGAGGAACCCGATTTGAACACCATTTGAATGCGATTTGAATTCGAATCTATCTGTTTCTCCGGCTTAGTTTTCAGTCCAAATCCATCATTTTCATGAAGTGCCTTTCCTTTGCTCACAGAATTCTCAAACACTCTTACAGTATCCCCATCGGCCAAGTCAAACCGCTGAGCAATCAAACTAATCGATCTGTCCGCCTTCTGGTCCTCGGTTTCGATGGTATATGTGCATTGGACGTCGTTGGGGTATTCAGAAGACAGATATCCGGGAGAGATGATTTCTCCGAGGACGTCACTCATCGATAGGTCACATCCACGTTTGTAGGAAATTGAGAAACCGCGGGAATTTGAATTCTGACGAGTCATCATGTAGATGTAGATGTGGGAGGTGGAGGAGGTGACGTATTTCTTGGTGGTGAGGTTTCCAGAGAATCTGA</canonical>
            <polymorphic>TGTATAGCTCTTCGAAAAATTCAATAAATCGAAAATTTCATTTTTGGCACTGTTTAGTATTTTAGCCATAACTCGGCTCAAAATGCTCCGATATTTCTGAGTTTTAGACTTAATTGAAGCTAGACAAAAATTCTACAGGTTTACACAAAGTTTATAGCATTGATCCAAGCATTAGATTACTGTAAATCTTTTCGAAAAGTTAAATATGTCGAAATTTTTAATTTTTCGGAACTACTTCTTATTTTCACTATATTTTAGCTCAAAATTCTTCAATCTTTGTAGATTTTGGACCCAATTACATTTAGAAAAAAATAAACAAAATACATTTAAATTCAATGCATTATCGCAAAAATTAGATTACTGTAACCCCCTTTGAAGTCTCAACAAATCCGAATTTTTCATTTTTTGGCATTGTTTCTTATTTTAGCCATAACTCGGCTCAATATGCTTCAATCTTCTTAATTTAAAGTTCAAATTACTGCTAAAGACATTTTCTATCYACCTGACAATTAAACTAAAGCCCACTAACCAATAGAATAACTGAAATTGAATCCCATCGCTTGTCTGGAGGAACCCGATTTGAACACCATTTGAATGCGATTTGAATTCGAATCTATCTGTTTCTCCGGCTTAGTTTTCAGTCCAAATCCATCATTTTCATGAAGTGCCTTTCCTTTGCTCACAGAATTCTCAAACACTCTTACAGTATCCCCATCGGCCAAGTCAAACCGCTGAGCAATCAAACTAATCGATCTGTCCGCCTTCTGGTCCTCGGTTTCGATGGTATATGTGCATTGGACGTCGTTGGGGTATTCAGAAGACAGATATCCGGGAGAGATGATTTCTCCGAGGACGTCACTCATCGATAGGTCACATCCACGTTTGTAGGAAATTGAGAAACCGCGGGAATTTGAATTCTGACGAGTCATCATGTAGATGTAGATGTGGGAGGTGGAGGAGGTGACGTATTTCTTGGTGGTGAGGTTTCCAGAGAATCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAATATGCTTCAATCTTCTTAAT</pcr_primer_p1>
		<pcr_primer_p2>AATTCTGTGAGCAAAGGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAATATGCTTCAATCTTCTTAATTTAAAGTTCAAATTACTGCTAAAGACATTTTCTATCTACCTGACAATTAAACTAAAGCCCACTAACCAATAGAATAACTGAAATTGAATCCCATCGCTTGTCTGGAGGAACCCGATTTGAACACCATTTGAATGCGATTTGAATTCGAATCTATCTGTTTCTCCGGCTTAGTTTTCAGTCCAAATCCATCATTTTCATGAAGTGCCTTTCCTTTGCTCACAGAATT</canonical_amplicon>
		<polymorphic_amplicon>TCAATATGCTTCAATCTTCTTAATTTAAAGTTCAAATTACTGCTAAAGACATTTTCTATCYACCTGACAATTAAACTAAAGCCCACTAACCAATAGAATAACTGAAATTGAATCCCATCGCTTGTCTGGAGGAACCCGATTTGAACACCATTTGAATGCGATTTGAATTCGAATCTATCTGTTTCTCCGGCTTAGTTTTCAGTCCAAATCCATCATTTTCATGAAGTGCCTTTCCTTTGCTCACAGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16050</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>48016</contig_pos>
        <strand>+</strand>
        <context>ATCYACCTGA[C/T]AATTAAACTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTAATTTAAAGTTCAAATTACTGCTAAAGACATTTTCTATCTACCTGA</left_flank>
        <right_flank>AATTAAACTAAAGCCCACTAACCAATAGAATAACTGAAATTGAATCCCAT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTTCGAAAAATTCAATAAATCGAAAATTTCATTTTTGGCACTGTTTAGTATTTTAGCCATAACTCGGCTCAAAATGCTCCGATATTTCTGAGTTTTAGACTTAATTGAAGCTAGACAAAAATTCTACAGGTTTACACAAAGTTTATAGCATTGATCCAAGCATTAGATTACTGTAAATCTTTTCGAAAAGTTAAATATGTCGAAATTTTTAATTTTTCGGAACTACTTCTTATTTTCACTATATTTTAGCTCAAAATTCTTCAATCTTTGTAGATTTTGGACCCAATTACATTTAGAAAAAAATAAACAAAATACATTTAAATTCAATGCATTATCGCAAAAATTAGATTACTGTAACCCCCTTTGAAGTCTCAACAAATCCGAATTTTTCATTTTTTGGCATTGTTTCTTATTTTAGCCATAACTCGGCTCAATATGCTTCAATCTTCTTAATTTAAAGTTCAAATTACTGCTAAAGACATTTTCTATCTACCTGACAATTAAACTAAAGCCCACTAACCAATAGAATAACTGAAATTGAATCCCATCGCTTGTCTGGAGGAACCCGATTTGAACACCATTTGAATGCGATTTGAATTCGAATCTATCTGTTTCTCCGGCTTAGTTTTCAGTCCAAATCCATCATTTTCATGAAGTGCCTTTCCTTTGCTCACAGAATTCTCAAACACTCTTACAGTATCCCCATCGGCCAAGTCAAACCGCTGAGCAATCAAACTAATCGATCTGTCCGCCTTCTGGTCCTCGGTTTCGATGGTATATGTGCATTGGACGTCGTTGGGGTATTCAGAAGACAGATATCCGGGAGAGATGATTTCTCCGAGGACGTCACTCATCGATAGGTCACATCCACGTTTGTAGGAAATTGAGAAACCGCGGGAATTTGAATTCTGACGAGTCATCATGTAGATGTAGATGTGGGAGGTGGAGGAGGTGACGTATTTCTTGGTGGTGAGGTTTCCAGAGAATCTGAAAGTTGA</canonical>
            <polymorphic>CTCTTCGAAAAATTCAATAAATCGAAAATTTCATTTTTGGCACTGTTTAGTATTTTAGCCATAACTCGGCTCAAAATGCTCCGATATTTCTGAGTTTTAGACTTAATTGAAGCTAGACAAAAATTCTACAGGTTTACACAAAGTTTATAGCATTGATCCAAGCATTAGATTACTGTAAATCTTTTCGAAAAGTTAAATATGTCGAAATTTTTAATTTTTCGGAACTACTTCTTATTTTCACTATATTTTAGCTCAAAATTCTTCAATCTTTGTAGATTTTGGACCCAATTACATTTAGAAAAAAATAAACAAAATACATTTAAATTCAATGCATTATCGCAAAAATTAGATTACTGTAACCCCCTTTGAAGTCTCAACAAATCCGAATTTTTCATTTTTTGGCATTGTTTCTTATTTTAGCCATAACTCGGCTCAATATGCTTCAATCTTCTTAATTTAAAGTTCAAATTACTGCTAAAGACATTTTCTATCTACCTGAYAATTAAACTAAAGCCCACTAACCAATAGAATAACTGAAATTGAATCCCATCGCTTGTCTGGAGGAACCCGATTTGAACACCATTTGAATGCGATTTGAATTCGAATCTATCTGTTTCTCCGGCTTAGTTTTCAGTCCAAATCCATCATTTTCATGAAGTGCCTTTCCTTTGCTCACAGAATTCTCAAACACTCTTACAGTATCCCCATCGGCCAAGTCAAACCGCTGAGCAATCAAACTAATCGATCTGTCCGCCTTCTGGTCCTCGGTTTCGATGGTATATGTGCATTGGACGTCGTTGGGGTATTCAGAAGACAGATATCCGGGAGAGATGATTTCTCCGAGGACGTCACTCATCGATAGGTCACATCCACGTTTGTAGGAAATTGAGAAACCGCGGGAATTTGAATTCTGACGAGTCATCATGTAGATGTAGATGTGGGAGGTGGAGGAGGTGACGTATTTCTTGGTGGTGAGGTTTCCAGAGAATCTGAAAGTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAATATGCTTCAATCTTCTTAAT</pcr_primer_p1>
		<pcr_primer_p2>AATTCTGTGAGCAAAGGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAATATGCTTCAATCTTCTTAATTTAAAGTTCAAATTACTGCTAAAGACATTTTCTATCTACCTGACAATTAAACTAAAGCCCACTAACCAATAGAATAACTGAAATTGAATCCCATCGCTTGTCTGGAGGAACCCGATTTGAACACCATTTGAATGCGATTTGAATTCGAATCTATCTGTTTCTCCGGCTTAGTTTTCAGTCCAAATCCATCATTTTCATGAAGTGCCTTTCCTTTGCTCACAGAATT</canonical_amplicon>
		<polymorphic_amplicon>TCAATATGCTTCAATCTTCTTAATTTAAAGTTCAAATTACTGCTAAAGACATTTTCTATCTACCTGAYAATTAAACTAAAGCCCACTAACCAATAGAATAACTGAAATTGAATCCCATCGCTTGTCTGGAGGAACCCGATTTGAACACCATTTGAATGCGATTTGAATTCGAATCTATCTGTTTCTCCGGCTTAGTTTTCAGTCCAAATCCATCATTTTCATGAAGTGCCTTTCCTTTGCTCACAGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16051</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>48080</contig_pos>
        <strand>+</strand>
        <context>TTGTCTGGAG[G/T]AACCCGATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCCACTAACCAATAGAATAACTGAAATTGAATCCCATCGCTTGTCTGGAG</left_flank>
        <right_flank>AACCCGATTTGAACACCATTTGAATGCGATTTGAATTCGAATCTATCTGT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCGGCTCAAAATGCTCCGATATTTCTGAGTTTTAGACTTAATTGAAGCTAGACAAAAATTCTACAGGTTTACACAAAGTTTATAGCATTGATCCAAGCATTAGATTACTGTAAATCTTTTCGAAAAGTTAAATATGTCGAAATTTTTAATTTTTCGGAACTACTTCTTATTTTCACTATATTTTAGCTCAAAATTCTTCAATCTTTGTAGATTTTGGACCCAATTACATTTAGAAAAAAATAAACAAAATACATTTAAATTCAATGCATTATCGCAAAAATTAGATTACTGTAACCCCCTTTGAAGTCTCAACAAATCCGAATTTTTCATTTTTTGGCATTGTTTCTTATTTTAGCCATAACTCGGCTCAATATGCTTCAATCTTCTTAATTTAAAGTTCAAATTACTGCTAAAGACATTTTCTATCTACCTGACAATTAAACTAAAGCCCACTAACCAATAGAATAACTGAAATTGAATCCCATCGCTTGTCTGGAGGAACCCGATTTGAACACCATTTGAATGCGATTTGAATTCGAATCTATCTGTTTCTCCGGCTTAGTTTTCAGTCCAAATCCATCATTTTCATGAAGTGCCTTTCCTTTGCTCACAGAATTCTCAAACACTCTTACAGTATCCCCATCGGCCAAGTCAAACCGCTGAGCAATCAAACTAATCGATCTGTCCGCCTTCTGGTCCTCGGTTTCGATGGTATATGTGCATTGGACGTCGTTGGGGTATTCAGAAGACAGATATCCGGGAGAGATGATTTCTCCGAGGACGTCACTCATCGATAGGTCACATCCACGTTTGTAGGAAATTGAGAAACCGCGGGAATTTGAATTCTGACGAGTCATCATGTAGATGTAGATGTGGGAGGTGGAGGAGGTGACGTATTTCTTGGTGGTGAGGTTTCCAGAGAATCTGAAAGTTGATTTTTTTAGATTTGGAAGTCGTGAAAGTGTCGGAGCTCTGAAAAATTCCCAAAAATCCGAGCTC</canonical>
            <polymorphic>CTCGGCTCAAAATGCTCCGATATTTCTGAGTTTTAGACTTAATTGAAGCTAGACAAAAATTCTACAGGTTTACACAAAGTTTATAGCATTGATCCAAGCATTAGATTACTGTAAATCTTTTCGAAAAGTTAAATATGTCGAAATTTTTAATTTTTCGGAACTACTTCTTATTTTCACTATATTTTAGCTCAAAATTCTTCAATCTTTGTAGATTTTGGACCCAATTACATTTAGAAAAAAATAAACAAAATACATTTAAATTCAATGCATTATCGCAAAAATTAGATTACTGTAACCCCCTTTGAAGTCTCAACAAATCCGAATTTTTCATTTTTTGGCATTGTTTCTTATTTTAGCCATAACTCGGCTCAATATGCTTCAATCTTCTTAATTTAAAGTTCAAATTACTGCTAAAGACATTTTCTATCTACCTGACAATTAAACTAAAGCCCACTAACCAATAGAATAACTGAAATTGAATCCCATCGCTTGTCTGGAGKAACCCGATTTGAACACCATTTGAATGCGATTTGAATTCGAATCTATCTGTTTCTCCGGCTTAGTTTTCAGTCCAAATCCATCATTTTCATGAAGTGCCTTTCCTTTGCTCACAGAATTCTCAAACACTCTTACAGTATCCCCATCGGCCAAGTCAAACCGCTGAGCAATCAAACTAATCGATCTGTCCGCCTTCTGGTCCTCGGTTTCGATGGTATATGTGCATTGGACGTCGTTGGGGTATTCAGAAGACAGATATCCGGGAGAGATGATTTCTCCGAGGACGTCACTCATCGATAGGTCACATCCACGTTTGTAGGAAATTGAGAAACCGCGGGAATTTGAATTCTGACGAGTCATCATGTAGATGTAGATGTGGGAGGTGGAGGAGGTGACGTATTTCTTGGTGGTGAGGTTTCCAGAGAATCTGAAAGTTGATTTTTTTAGATTTGGAAGTCGTGAAAGTGTCGGAGCTCTGAAAAATTCCCAAAAATCCGAGCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>499 282 219</canonical_bands>
                <polymorphic_bands>781 219</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTCAAATTACTGCTAAAGACA</pcr_primer_p1>
		<pcr_primer_p2>ATGGGGATACTGTAAGAGTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGTTCAAATTACTGCTAAAGACATTTTCTATCTACCTGACAATTAAACTAAAGCCCACTAACCAATAGAATAACTGAAATTGAATCCCATCGCTTGTCTGGAGGAACCCGATTTGAACACCATTTGAATGCGATTTGAATTCGAATCTATCTGTTTCTCCGGCTTAGTTTTCAGTCCAAATCCATCATTTTCATGAAGTGCCTTTCCTTTGCTCACAGAATTCTCAAACACTCTTACAGTATCCCCAT</canonical_amplicon>
		<polymorphic_amplicon>AAGTTCAAATTACTGCTAAAGACATTTTCTATCTACCTGACAATTAAACTAAAGCCCACTAACCAATAGAATAACTGAAATTGAATCCCATCGCTTGTCTGGAGKAACCCGATTTGAACACCATTTGAATGCGATTTGAATTCGAATCTATCTGTTTCTCCGGCTTAGTTTTCAGTCCAAATCCATCATTTTCATGAAGTGCCTTTCCTTTGCTCACAGAATTCTCAAACACTCTTACAGTATCCCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16052</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>48154</contig_pos>
        <strand>+</strand>
        <context>TTTTCAGTCC[A/G]AATCCATCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGCGATTTGAATTCGAATCTATCTGTTTCTCCGGCTTAGTTTTCAGTCC</left_flank>
        <right_flank>AATCCATCATTTTCATGAAGTGCCTTTCCTTTGCTCACAGAATTCTCAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAGTTTATAGCATTGATCCAAGCATTAGATTACTGTAAATCTTTTCGAAAAGTTAAATATGTCGAAATTTTTAATTTTTCGGAACTACTTCTTATTTTCACTATATTTTAGCTCAAAATTCTTCAATCTTTGTAGATTTTGGACCCAATTACATTTAGAAAAAAATAAACAAAATACATTTAAATTCAATGCATTATCGCAAAAATTAGATTACTGTAACCCCCTTTGAAGTCTCAACAAATCCGAATTTTTCATTTTTTGGCATTGTTTCTTATTTTAGCCATAACTCGGCTCAATATGCTTCAATCTTCTTAATTTAAAGTTCAAATTACTGCTAAAGACATTTTCTATCTACCTGACAATTAAACTAAAGCCCACTAACCAATAGAATAACTGAAATTGAATCCCATCGCTTGTCTGGAGGAACCCGATTTGAACACCATTTGAATGCGATTTGAATTCGAATCTATCTGTTTCTCCGGCTTAGTTTTCAGTCCAAATCCATCATTTTCATGAAGTGCCTTTCCTTTGCTCACAGAATTCTCAAACACTCTTACAGTATCCCCATCGGCCAAGTCAAACCGCTGAGCAATCAAACTAATCGATCTGTCCGCCTTCTGGTCCTCGGTTTCGATGGTATATGTGCATTGGACGTCGTTGGGGTATTCAGAAGACAGATATCCGGGAGAGATGATTTCTCCGAGGACGTCACTCATCGATAGGTCACATCCACGTTTGTAGGAAATTGAGAAACCGCGGGAATTTGAATTCTGACGAGTCATCATGTAGATGTAGATGTGGGAGGTGGAGGAGGTGACGTATTTCTTGGTGGTGAGGTTTCCAGAGAATCTGAAAGTTGATTTTTTTAGATTTGGAAGTCGTGAAAGTGTCGGAGCTCTGAAAAATTCCCAAAAATCCGAGCTCAACTGGTCAAAAACACAAAACAACTAGGGATTGAATTCAAAATTGGAAACTTCGCGGAAATTTGGCCCAGGATA</canonical>
            <polymorphic>CAAAGTTTATAGCATTGATCCAAGCATTAGATTACTGTAAATCTTTTCGAAAAGTTAAATATGTCGAAATTTTTAATTTTTCGGAACTACTTCTTATTTTCACTATATTTTAGCTCAAAATTCTTCAATCTTTGTAGATTTTGGACCCAATTACATTTAGAAAAAAATAAACAAAATACATTTAAATTCAATGCATTATCGCAAAAATTAGATTACTGTAACCCCCTTTGAAGTCTCAACAAATCCGAATTTTTCATTTTTTGGCATTGTTTCTTATTTTAGCCATAACTCGGCTCAATATGCTTCAATCTTCTTAATTTAAAGTTCAAATTACTGCTAAAGACATTTTCTATCTACCTGACAATTAAACTAAAGCCCACTAACCAATAGAATAACTGAAATTGAATCCCATCGCTTGTCTGGAGGAACCCGATTTGAACACCATTTGAATGCGATTTGAATTCGAATCTATCTGTTTCTCCGGCTTAGTTTTCAGTCCRAATCCATCATTTTCATGAAGTGCCTTTCCTTTGCTCACAGAATTCTCAAACACTCTTACAGTATCCCCATCGGCCAAGTCAAACCGCTGAGCAATCAAACTAATCGATCTGTCCGCCTTCTGGTCCTCGGTTTCGATGGTATATGTGCATTGGACGTCGTTGGGGTATTCAGAAGACAGATATCCGGGAGAGATGATTTCTCCGAGGACGTCACTCATCGATAGGTCACATCCACGTTTGTAGGAAATTGAGAAACCGCGGGAATTTGAATTCTGACGAGTCATCATGTAGATGTAGATGTGGGAGGTGGAGGAGGTGACGTATTTCTTGGTGGTGAGGTTTCCAGAGAATCTGAAAGTTGATTTTTTTAGATTTGGAAGTCGTGAAAGTGTCGGAGCTCTGAAAAATTCCCAAAAATCCGAGCTCAACTGGTCAAAAACACAAAACAACTAGGGATTGAATTCAAAATTGGAAACTTCGCGGAAATTTGGCCCAGGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTCAAATTACTGCTAAAGACA</pcr_primer_p1>
		<pcr_primer_p2>ATGGGGATACTGTAAGAGTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGTTCAAATTACTGCTAAAGACATTTTCTATCTACCTGACAATTAAACTAAAGCCCACTAACCAATAGAATAACTGAAATTGAATCCCATCGCTTGTCTGGAGGAACCCGATTTGAACACCATTTGAATGCGATTTGAATTCGAATCTATCTGTTTCTCCGGCTTAGTTTTCAGTCCAAATCCATCATTTTCATGAAGTGCCTTTCCTTTGCTCACAGAATTCTCAAACACTCTTACAGTATCCCCAT</canonical_amplicon>
		<polymorphic_amplicon>AAGTTCAAATTACTGCTAAAGACATTTTCTATCTACCTGACAATTAAACTAAAGCCCACTAACCAATAGAATAACTGAAATTGAATCCCATCGCTTGTCTGGAGGAACCCGATTTGAACACCATTTGAATGCGATTTGAATTCGAATCTATCTGTTTCTCCGGCTTAGTTTTCAGTCCRAATCCATCATTTTCATGAAGTGCCTTTCCTTTGCTCACAGAATTCTCAAACACTCTTACAGTATCCCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16053</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>48298</contig_pos>
        <strand>+</strand>
        <context>CGATGGTATA[G/T]GTGCATTGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATCAAACTAATCGATCTGTCCGCCTTCTGGTCCTCGGTTTCGATGGTATA</left_flank>
        <right_flank>GTGCATTGGACGTCGTTGGGGTATTCAGAAGACAGATATCCGGGAGAGAT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCCAATTACATTTAGAAAAAAATAAACAAAATACATTTAAATTCAATGCATTATCGCAAAAATTAGATTACTGTAACCCCCTTTGAAGTCTCAACAAATCCGAATTTTTCATTTTTTGGCATTGTTTCTTATTTTAGCCATAACTCGGCTCAATATGCTTCAATCTTCTTAATTTAAAGTTCAAATTACTGCTAAAGACATTTTCTATCTACCTGACAATTAAACTAAAGCCCACTAACCAATAGAATAACTGAAATTGAATCCCATCGCTTGTCTGGAGGAACCCGATTTGAACACCATTTGAATGCGATTTGAATTCGAATCTATCTGTTTCTCCGGCTTAGTTTTCAGTCCAAATCCATCATTTTCATGAAGTGCCTTTCCTTTGCTCACAGAATTCTCAAACACTCTTACAGTATCCCCATCGGCCAAGTCAAACCGCTGAGCAATCAAACTAATCGATCTGTCCGCCTTCTGGTCCTCGGTTTCGATGGTATATGTGCATTGGACGTCGTTGGGGTATTCAGAAGACAGATATCCGGGAGAGATGATTTCTCCGAGGACGTCACTCATCGATAGGTCACATCCACGTTTGTAGGAAATTGAGAAACCGCGGGAATTTGAATTCTGACGAGTCATCATGTAGATGTAGATGTGGGAGGTGGAGGAGGTGACGTATTTCTTGGTGGTGAGGTTTCCAGAGAATCTGAAAGTTGATTTTTTTAGATTTGGAAGTCGTGAAAGTGTCGGAGCTCTGAAAAATTCCCAAAAATCCGAGCTCAACTGGTCAAAAACACAAAACAACTAGGGATTGAATTCAAAATTGGAAACTTCGCGGAAATTTGGCCCAGGATACTTTAGATTTCAAAATTTGAGTTTTCAATTTTATGTAGAGGGATGTAGAATTTTGAAAACCATCTAAAAATATTAAATTCAAAACAATCCGACTATTTGCAGCGAAGTTATAGACTTATTGGCTACCGTAGTCCGACATTTGAA</canonical>
            <polymorphic>ACCCAATTACATTTAGAAAAAAATAAACAAAATACATTTAAATTCAATGCATTATCGCAAAAATTAGATTACTGTAACCCCCTTTGAAGTCTCAACAAATCCGAATTTTTCATTTTTTGGCATTGTTTCTTATTTTAGCCATAACTCGGCTCAATATGCTTCAATCTTCTTAATTTAAAGTTCAAATTACTGCTAAAGACATTTTCTATCTACCTGACAATTAAACTAAAGCCCACTAACCAATAGAATAACTGAAATTGAATCCCATCGCTTGTCTGGAGGAACCCGATTTGAACACCATTTGAATGCGATTTGAATTCGAATCTATCTGTTTCTCCGGCTTAGTTTTCAGTCCAAATCCATCATTTTCATGAAGTGCCTTTCCTTTGCTCACAGAATTCTCAAACACTCTTACAGTATCCCCATCGGCCAAGTCAAACCGCTGAGCAATCAAACTAATCGATCTGTCCGCCTTCTGGTCCTCGGTTTCGATGGTATAKGTGCATTGGACGTCGTTGGGGTATTCAGAAGACAGATATCCGGGAGAGATGATTTCTCCGAGGACGTCACTCATCGATAGGTCACATCCACGTTTGTAGGAAATTGAGAAACCGCGGGAATTTGAATTCTGACGAGTCATCATGTAGATGTAGATGTGGGAGGTGGAGGAGGTGACGTATTTCTTGGTGGTGAGGTTTCCAGAGAATCTGAAAGTTGATTTTTTTAGATTTGGAAGTCGTGAAAGTGTCGGAGCTCTGAAAAATTCCCAAAAATCCGAGCTCAACTGGTCAAAAACACAAAACAACTAGGGATTGAATTCAAAATTGGAAACTTCGCGGAAATTTGGCCCAGGATACTTTAGATTTCAAAATTTGAGTTTTCAATTTTATGTAGAGGGATGTAGAATTTTGAAAACCATCTAAAAATATTAAATTCAAAACAATCCGACTATTTGCAGCGAAGTTATAGACTTATTGGCTACCGTAGTCCGACATTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCAAACTAATCGATCTGTCC</pcr_primer_p1>
		<pcr_primer_p2>AACCTCACCACCAAGAAATAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATCAAACTAATCGATCTGTCCGCCTTCTGGTCCTCGGTTTCGATGGTATATGTGCATTGGACGTCGTTGGGGTATTCAGAAGACAGATATCCGGGAGAGATGATTTCTCCGAGGACGTCACTCATCGATAGGTCACATCCACGTTTGTAGGAAATTGAGAAACCGCGGGAATTTGAATTCTGACGAGTCATCATGTAGATGTAGATGTGGGAGGTGGAGGAGGTGACGTATTTCTTGGTGGTGAGGTT</canonical_amplicon>
		<polymorphic_amplicon>AATCAAACTAATCGATCTGTCCGCCTTCTGGTCCTCGGTTTCGATGGTATAKGTGCATTGGACGTCGTTGGGGTATTCAGAAGACAGATATCCGGGAGAGATGATTTCTCCGAGGACGTCACTCATCGATAGGTCACATCCACGTTTGTAGGAAATTGAGAAACCGCGGGAATTTGAATTCTGACGAGTCATCATGTAGATGTAGATGTGGGAGGTGGAGGAGGTGACGTATTTCTTGGTGGTGAGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16054</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>51176</contig_pos>
        <strand>+</strand>
        <context>TTCATAGGTC[C/T]GGCAAGCCGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGATAGTTCGGTGAGCTTAATTGTCCACTTTCTCCTTTTTCATAGGTC</left_flank>
        <right_flank>GGCAAGCCGGTTGGAATGCTGATGGACAGTTTTGTTCATCGGATCCATCG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCGAACAAGTTTGAAGCAAGTTATGAGCCTGGAAAGAGACGCAGGTTCGCTAGAGTGCTCTCGTTTCTCTGCGTTTCTTTAAAGGCGCATAACTCGCTTCAAATTGAAGCTAGAAAAATGAAAATTAGATAGTTTTGTAGGAAATTTCAAAAGGACATTCCTAGAACATCAAGAAAGCCTTTTATTTGTGTGCGTCTAGCACTCTCTAGGAGATCTCTGGGAGTTTAAATGCGCATAACTTGTGTCAAAATGAAGTTAGAATGGAAATTTCAAGAATTTTCTAACAAAAACTCTTACCTGTTGTACTATTCTCCGCTGGTCCACCATCTAGCACTGTCAAAACATCAAAAACGGGTTCTGTCTCAAAATGCTCTATCGTCAACTCGATTCTCGAGTTCACGGGTCCTTCCAAAACATAACGGCAGTTTAAATTCGGGTCATAGCTATTTGGATAGTTCGGTGAGCTTAATTGTCCACTTTCTCCTTTTTCATAGGTCCGGCAAGCCGGTTGGAATGCTGATGGACAGTTTTGTTCATCGGATCCATCGTCACAATCATTGAATCCATTACACTTCTTGGATTCCGAGATACAGGATCCAGATGAGCAGAAATAGGATCCTTGAACGCATGCTGGACGTTCACAAACGAATCTGCGGAGGAGATTACAGGTTTCTAGTCTCCATTCGAGGTCTTTTCGTTCCACACGACCCATTGCACATGTCCCGTTTAGGAAGTTTGGCTGATCCTGTCTCCAGAAGCCCACGTAGCGAGATGTAGGCGTTCCGTCTGACCAAATGTAGAGCTCATCGTCGTCGAGGACCTGGAAAACACAGATTACGGTTAATTTGTTTGATTTGGGCGTTTTCTAAGCTTCAAAATAAGCTCAAATACGAGTATGGGGAAATTTTTAAAAGTCTTGTAACTTCATCAATTTTGATTCAAACTTCTCAGCATGAATCCCATTCAATTTGTTAAAAATAGAGCTTTAAAATGAGCCC</canonical>
            <polymorphic>AATCGAACAAGTTTGAAGCAAGTTATGAGCCTGGAAAGAGACGCAGGTTCGCTAGAGTGCTCTCGTTTCTCTGCGTTTCTTTAAAGGCGCATAACTCGCTTCAAATTGAAGCTAGAAAAATGAAAATTAGATAGTTTTGTAGGAAATTTCAAAAGGACATTCCTAGAACATCAAGAAAGCCTTTTATTTGTGTGCGTCTAGCACTCTCTAGGAGATCTCTGGGAGTTTAAATGCGCATAACTTGTGTCAAAATGAAGTTAGAATGGAAATTTCAAGAATTTTCTAACAAAAACTCTTACCTGTTGTACTATTCTCCGCTGGTCCACCATCTAGCACTGTCAAAACATCAAAAACGGGTTCTGTCTCAAAATGCTCTATCGTCAACTCGATTCTCGAGTTCACGGGTCCTTCCAAAACATAACGGCAGTTTAAATTCGGGTCATAGCTATTTGGATAGTTCGGTGAGCTTAATTGTCCACTTTCTCCTTTTTCATAGGTCYGGCAAGCCGGTTGGAATGCTGATGGACAGTTTTGTTCATCGGATCCATCGTCACAATCATTGAATCCATTACACTTCTTGGATTCCGAGATACAGGATCCAGATGAGCAGAAATAGGATCCTTGAACGCATGCTGGACGTTCACAAACGAATCTGCGGAGGAGATTACAGGTTTCTAGTCTCCATTCGAGGTCTTTTCGTTCCACACGACCCATTGCACATGTCCCGTTTAGGAAGTTTGGCTGATCCTGTCTCCAGAAGCCCACGTAGCGAGATGTAGGCGTTCCGTCTGACCAAATGTAGAGCTCATCGTCGTCGAGGACCTGGAAAACACAGATTACGGTTAATTTGTTTGATTTGGGCGTTTTCTAAGCTTCAAAATAAGCTCAAATACGAGTATGGGGAAATTTTTAAAAGTCTTGTAACTTCATCAATTTTGATTCAAACTTCTCAGCATGAATCCCATTCAATTTGTTAAAAATAGAGCTTTAAAATGAGCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>323 320 181 92 84</canonical_bands>
                <polymorphic_bands>415 320 181 84</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>323 320 181 92 84</canonical_bands>
                <polymorphic_bands>415 320 181 84</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 493 8</canonical_bands>
                <polymorphic_bands>507 493</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGCACTGTCAAAACATCAAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAGTGTAATGGATTCAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTAGCACTGTCAAAACATCAAAAACGGGTTCTGTCTCAAAATGCTCTATCGTCAACTCGATTCTCGAGTTCACGGGTCCTTCCAAAACATAACGGCAGTTTAAATTCGGGTCATAGCTATTTGGATAGTTCGGTGAGCTTAATTGTCCACTTTCTCCTTTTTCATAGGTCCGGCAAGCCGGTTGGAATGCTGATGGACAGTTTTGTTCATCGGATCCATCGTCACAATCATTGAATCCATTACACTTCT</canonical_amplicon>
		<polymorphic_amplicon>CTAGCACTGTCAAAACATCAAAAACGGGTTCTGTCTCAAAATGCTCTATCGTCAACTCGATTCTCGAGTTCACGGGTCCTTCCAAAACATAACGGCAGTTTAAATTCGGGTCATAGCTATTTGGATAGTTCGGTGAGCTTAATTGTCCACTTTCTCCTTTTTCATAGGTCYGGCAAGCCGGTTGGAATGCTGATGGACAGTTTTGTTCATCGGATCCATCGTCACAATCATTGAATCCATTACACTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16055</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>51160</contig_pos>
        <strand>+</strand>
        <context>GTCCACTTTC[C/T]CCTTTTTCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCGGGTCATAGCTATTTGGATAGTTCGGTGAGCTTAATTGTCCACTTTC</left_flank>
        <right_flank>CCTTTTTCATAGGTCCGGCAAGCCGGTTGGAATGCTGATGGACAGTTTTG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGCTATTTTTATAAAAATCGAACAAGTTTGAAGCAAGTTATGAGCCTGGAAAGAGACGCAGGTTCGCTAGAGTGCTCTCGTTTCTCTGCGTTTCTTTAAAGGCGCATAACTCGCTTCAAATTGAAGCTAGAAAAATGAAAATTAGATAGTTTTGTAGGAAATTTCAAAAGGACATTCCTAGAACATCAAGAAAGCCTTTTATTTGTGTGCGTCTAGCACTCTCTAGGAGATCTCTGGGAGTTTAAATGCGCATAACTTGTGTCAAAATGAAGTTAGAATGGAAATTTCAAGAATTTTCTAACAAAAACTCTTACCTGTTGTACTATTCTCCGCTGGTCCACCATCTAGCACTGTCAAAACATCAAAAACGGGTTCTGTCTCAAAATGCTCTATCGTCAACTCGATTCTCGAGTTCACGGGTCCTTCCAAAACATAACGGCAGTTTAAATTCGGGTCATAGCTATTTGGATAGTTCGGTGAGCTTAATTGTCCACTTTCTCCTTTTTCATAGGTCCGGCAAGCCGGTTGGAATGCTGATGGACAGTTTTGTTCATCGGATCCATCGTCACAATCATTGAATCCATTACACTTCTTGGATTCCGAGATACAGGATCCAGATGAGCAGAAATAGGATCCTTGAACGCATGCTGGACGTTCACAAACGAATCTGCGGAGGAGATTACAGGTTTCTAGTCTCCATTCGAGGTCTTTTCGTTCCACACGACCCATTGCACATGTCCCGTTTAGGAAGTTTGGCTGATCCTGTCTCCAGAAGCCCACGTAGCGAGATGTAGGCGTTCCGTCTGACCAAATGTAGAGCTCATCGTCGTCGAGGACCTGGAAAACACAGATTACGGTTAATTTGTTTGATTTGGGCGTTTTCTAAGCTTCAAAATAAGCTCAAATACGAGTATGGGGAAATTTTTAAAAGTCTTGTAACTTCATCAATTTTGATTCAAACTTCTCAGCATGAATCCCATTCAATTTGTTAAAAATAGA</canonical>
            <polymorphic>GTGCTATTTTTATAAAAATCGAACAAGTTTGAAGCAAGTTATGAGCCTGGAAAGAGACGCAGGTTCGCTAGAGTGCTCTCGTTTCTCTGCGTTTCTTTAAAGGCGCATAACTCGCTTCAAATTGAAGCTAGAAAAATGAAAATTAGATAGTTTTGTAGGAAATTTCAAAAGGACATTCCTAGAACATCAAGAAAGCCTTTTATTTGTGTGCGTCTAGCACTCTCTAGGAGATCTCTGGGAGTTTAAATGCGCATAACTTGTGTCAAAATGAAGTTAGAATGGAAATTTCAAGAATTTTCTAACAAAAACTCTTACCTGTTGTACTATTCTCCGCTGGTCCACCATCTAGCACTGTCAAAACATCAAAAACGGGTTCTGTCTCAAAATGCTCTATCGTCAACTCGATTCTCGAGTTCACGGGTCCTTCCAAAACATAACGGCAGTTTAAATTCGGGTCATAGCTATTTGGATAGTTCGGTGAGCTTAATTGTCCACTTTCYCCTTTTTCATAGGTCCGGCAAGCCGGTTGGAATGCTGATGGACAGTTTTGTTCATCGGATCCATCGTCACAATCATTGAATCCATTACACTTCTTGGATTCCGAGATACAGGATCCAGATGAGCAGAAATAGGATCCTTGAACGCATGCTGGACGTTCACAAACGAATCTGCGGAGGAGATTACAGGTTTCTAGTCTCCATTCGAGGTCTTTTCGTTCCACACGACCCATTGCACATGTCCCGTTTAGGAAGTTTGGCTGATCCTGTCTCCAGAAGCCCACGTAGCGAGATGTAGGCGTTCCGTCTGACCAAATGTAGAGCTCATCGTCGTCGAGGACCTGGAAAACACAGATTACGGTTAATTTGTTTGATTTGGGCGTTTTCTAAGCTTCAAAATAAGCTCAAATACGAGTATGGGGAAATTTTTAAAAGTCTTGTAACTTCATCAATTTTGATTCAAACTTCTCAGCATGAATCCCATTCAATTTGTTAAAAATAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGCACTGTCAAAACATCAAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAGTGTAATGGATTCAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTAGCACTGTCAAAACATCAAAAACGGGTTCTGTCTCAAAATGCTCTATCGTCAACTCGATTCTCGAGTTCACGGGTCCTTCCAAAACATAACGGCAGTTTAAATTCGGGTCATAGCTATTTGGATAGTTCGGTGAGCTTAATTGTCCACTTTCTCCTTTTTCATAGGTCCGGCAAGCCGGTTGGAATGCTGATGGACAGTTTTGTTCATCGGATCCATCGTCACAATCATTGAATCCATTACACTTCT</canonical_amplicon>
		<polymorphic_amplicon>CTAGCACTGTCAAAACATCAAAAACGGGTTCTGTCTCAAAATGCTCTATCGTCAACTCGATTCTCGAGTTCACGGGTCCTTCCAAAACATAACGGCAGTTTAAATTCGGGTCATAGCTATTTGGATAGTTCGGTGAGCTTAATTGTCCACTTTCYCCTTTTTCATAGGTCCGGCAAGCCGGTTGGAATGCTGATGGACAGTTTTGTTCATCGGATCCATCGTCACAATCATTGAATCCATTACACTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16057</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>87460</contig_pos>
        <strand>+</strand>
        <context>TTTTATTAAA[A/G]RTTGTACGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGAGATAACTGAGCCTAAACTTGACAGTATGGGGAATCTTTTATTAAA</left_flank>
        <right_flank>ATTGTACGGTATGCATTTTTTGATGTGTTGACCCAAAATGGAATTGTCTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGCTTCTTCCACGACTTCATCATCTGGATCATCCAGTTCATGCACTTCATATGCTGCCGATTCCAGCTCTGCGTGTGCCGACTGGGCAGCCAATGGGTTTTGCACCAACACATTCTATACAGTAGCCCAAAGAACTGCGTATTGTGCAACGACATGCAAACTTTGCTGAGAACATTTTTTAGAGGCAACCAACACAGGAAGACGATGACGACGATAATGGGTTCTTATTTTGTAATTTTCGTGTCTGACCAACAAGAAATAAAGTTTGAATCCATGCGAATTTAATATCTGATTAGCTAAAGTTTATGAATTATCGGAGAACTTGAATACCGTAAAATCTGCAATGGAAGGGCTCCCCGTTCTTTTTGCTTCGATCCAATGTTTCTTGGTTCCAATAAAAGATTAAAAAAAAGTAAACTGATAAAAAATGTAAACTGATTATTGAGATATTGAGATAACTGAGCCTAAACTTGACAGTATGGGGAATCTTTTATTAAAAATTGTACGGTATGCATTTTTTGATGTGTTGACCCAAAATGGAATTGTCTTTCCAATGCGTGAACCTTCGAAATTTTCTGGTCTTCCCTCCCAATTTATCTTCCTCAAGTGTTTTTAAAAGAAGATTTAAAGGCCTTCTCCATTTTTTGTATGTTTTTTTTTATTTCAGAAAGAGAATGTTGCTGATGATGTCAACGTTTTTCTACGTTTTATTCACGGTTACTGTACTTTTCTTATGCTCCAAGGTAAGATCTATCCCTCGTTTCTCCAGCCCATTTATGTCATATTCAGAAGAAAAAAGAACGAGGCAAAAAACTGAAGTCATCTGAATCTAGTCGCAAAGGGTCGAAAACTTCTAAATCTGAAGAAACCAAAGAAAAACCAAATCCTTCACATTTTCCCGATGTTGCTCCAGCTCCTCCAGAACTTTCTCCACCTACTCCAGTGGCTCCTGCCAAACCTGCAATGGCGGGTGAGCGCTCATTGATAGTTTTTCTAAAA</canonical>
            <polymorphic>GTGCTTCTTCCACGACTTCATCATCTGGATCATCCAGTTCATGCACTTCATATGCTGCCGATTCCAGCTCTGCGTGTGCCGACTGGGCAGCCAATGGGTTTTGCACCAACACATTCTATACAGTAGCCCAAAGAACTGCGTATTGTGCAACGACATGCAAACTTTGCTGAGAACATTTTTTAGAGGCAACCAACACAGGAAGACGATGACGACGATAATGGGTTCTTATTTTGTAATTTTCGTGTCTGACCAACAAGAAATAAAGTTTGAATCCATGCGAATTTAATATCTGATTAGCTAAAGTTTATGAATTATCGGAGAACTTGAATACCGTAAAATCTGCAATGGAAGGGCTCCCCGTTCTTTTTGCTTCGATCCAATGTTTCTTGGTTCCAATAAAAGATTAAAAAAAAGTAAACTGATAAAAAATGTAAACTGATTATTGAGATATTGAGATAACTGAGCCTAAACTTGACAGTATGGGGAATCTTTTATTAAARATTGTACGGTATGCATTTTTTGATGTGTTGACCCAAAATGGAATTGTCTTTCCAATGCGTGAACCTTCGAAATTTTCTGGTCTTCCCTCCCAATTTATCTTCCTCAAGTGTTTTTAAAAGAAGATTTAAAGGCCTTCTCCATTTTTTGTATGTTTTTTTTTATTTCAGAAAGAGAATGTTGCTGATGATGTCAACGTTTTTCTACGTTTTATTCACGGTTACTGTACTTTTCTTATGCTCCAAGGTAAGATCTATCCCTCGTTTCTCCAGCCCATTTATGTCATATTCAGAAGAAAAAAGAACGAGGCAAAAAACTGAAGTCATCTGAATCTAGTCGCAAAGGGTCGAAAACTTCTAAATCTGAAGAAACCAAAGAAAAACCAAATCCTTCACATTTTCCCGATGTTGCTCCAGCTCCTCCAGAACTTTCTCCACCTACTCCAGTGGCTCCTGCCAAACCTGCAATGGCGGGTGAGCGCTCATTGATAGTTTTTCTAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>409 234 190 45 42 30 29 21</canonical_bands>
                <polymorphic_bands>409 234 232 45 30 29 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGAATTATCGGAGAACTTGAA</pcr_primer_p1>
		<pcr_primer_p2>TTGGAAAGACAATTCCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATGAATTATCGGAGAACTTGAATACCGTAAAATCTGCAATGGAAGGGCTCCCCGTTCTTTTTGCTTCGATCCAATGTTTCTTGGTTCCAATAAAAGATTAAAAAAAAGTAAACTGATAAAAAATGTAAACTGATTATTGAGATATTGAGATAACTGAGCCTAAACTTGACAGTATGGGGAATCTTTTATTAAAAATTGTACGGTATGCATTTTTTGATGTGTTGACCCAAAATGGAATTGTCTTTCCAA</canonical_amplicon>
		<polymorphic_amplicon>TATGAATTATCGGAGAACTTGAATACCGTAAAATCTGCAATGGAAGGGCTCCCCGTTCTTTTTGCTTCGATCCAATGTTTCTTGGTTCCAATAAAAGATTAAAAAAAAGTAAACTGATAAAAAATGTAAACTGATTATTGAGATATTGAGATAACTGAGCCTAAACTTGACAGTATGGGGAATCTTTTATTAAARATTGTACGGTATGCATTTTTTGATGTGTTGACCCAAAATGGAATTGTCTTTCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16058</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>87461</contig_pos>
        <strand>+</strand>
        <context>TTTATTAAAR[A/G]TTGTACGGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAGATAACTGAGCCTAAACTTGACAGTATGGGGAATCTTTTATTAAAA</left_flank>
        <right_flank>TTGTACGGTATGCATTTTTTGATGTGTTGACCCAAAATGGAATTGTCTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCTTCTTCCACGACTTCATCATCTGGATCATCCAGTTCATGCACTTCATATGCTGCCGATTCCAGCTCTGCGTGTGCCGACTGGGCAGCCAATGGGTTTTGCACCAACACATTCTATACAGTAGCCCAAAGAACTGCGTATTGTGCAACGACATGCAAACTTTGCTGAGAACATTTTTTAGAGGCAACCAACACAGGAAGACGATGACGACGATAATGGGTTCTTATTTTGTAATTTTCGTGTCTGACCAACAAGAAATAAAGTTTGAATCCATGCGAATTTAATATCTGATTAGCTAAAGTTTATGAATTATCGGAGAACTTGAATACCGTAAAATCTGCAATGGAAGGGCTCCCCGTTCTTTTTGCTTCGATCCAATGTTTCTTGGTTCCAATAAAAGATTAAAAAAAAGTAAACTGATAAAAAATGTAAACTGATTATTGAGATATTGAGATAACTGAGCCTAAACTTGACAGTATGGGGAATCTTTTATTAAAAATTGTACGGTATGCATTTTTTGATGTGTTGACCCAAAATGGAATTGTCTTTCCAATGCGTGAACCTTCGAAATTTTCTGGTCTTCCCTCCCAATTTATCTTCCTCAAGTGTTTTTAAAAGAAGATTTAAAGGCCTTCTCCATTTTTTGTATGTTTTTTTTTATTTCAGAAAGAGAATGTTGCTGATGATGTCAACGTTTTTCTACGTTTTATTCACGGTTACTGTACTTTTCTTATGCTCCAAGGTAAGATCTATCCCTCGTTTCTCCAGCCCATTTATGTCATATTCAGAAGAAAAAAGAACGAGGCAAAAAACTGAAGTCATCTGAATCTAGTCGCAAAGGGTCGAAAACTTCTAAATCTGAAGAAACCAAAGAAAAACCAAATCCTTCACATTTTCCCGATGTTGCTCCAGCTCCTCCAGAACTTTCTCCACCTACTCCAGTGGCTCCTGCCAAACCTGCAATGGCGGGTGAGCGCTCATTGATAGTTTTTCTAAAAG</canonical>
            <polymorphic>TGCTTCTTCCACGACTTCATCATCTGGATCATCCAGTTCATGCACTTCATATGCTGCCGATTCCAGCTCTGCGTGTGCCGACTGGGCAGCCAATGGGTTTTGCACCAACACATTCTATACAGTAGCCCAAAGAACTGCGTATTGTGCAACGACATGCAAACTTTGCTGAGAACATTTTTTAGAGGCAACCAACACAGGAAGACGATGACGACGATAATGGGTTCTTATTTTGTAATTTTCGTGTCTGACCAACAAGAAATAAAGTTTGAATCCATGCGAATTTAATATCTGATTAGCTAAAGTTTATGAATTATCGGAGAACTTGAATACCGTAAAATCTGCAATGGAAGGGCTCCCCGTTCTTTTTGCTTCGATCCAATGTTTCTTGGTTCCAATAAAAGATTAAAAAAAAGTAAACTGATAAAAAATGTAAACTGATTATTGAGATATTGAGATAACTGAGCCTAAACTTGACAGTATGGGGAATCTTTTATTAAAARTTGTACGGTATGCATTTTTTGATGTGTTGACCCAAAATGGAATTGTCTTTCCAATGCGTGAACCTTCGAAATTTTCTGGTCTTCCCTCCCAATTTATCTTCCTCAAGTGTTTTTAAAAGAAGATTTAAAGGCCTTCTCCATTTTTTGTATGTTTTTTTTTATTTCAGAAAGAGAATGTTGCTGATGATGTCAACGTTTTTCTACGTTTTATTCACGGTTACTGTACTTTTCTTATGCTCCAAGGTAAGATCTATCCCTCGTTTCTCCAGCCCATTTATGTCATATTCAGAAGAAAAAAGAACGAGGCAAAAAACTGAAGTCATCTGAATCTAGTCGCAAAGGGTCGAAAACTTCTAAATCTGAAGAAACCAAAGAAAAACCAAATCCTTCACATTTTCCCGATGTTGCTCCAGCTCCTCCAGAACTTTCTCCACCTACTCCAGTGGCTCCTGCCAAACCTGCAATGGCGGGTGAGCGCTCATTGATAGTTTTTCTAAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>410 233 190 45 42 30 29 21</canonical_bands>
                <polymorphic_bands>410 233 232 45 30 29 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGAATTATCGGAGAACTTGAA</pcr_primer_p1>
		<pcr_primer_p2>TTGGAAAGACAATTCCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATGAATTATCGGAGAACTTGAATACCGTAAAATCTGCAATGGAAGGGCTCCCCGTTCTTTTTGCTTCGATCCAATGTTTCTTGGTTCCAATAAAAGATTAAAAAAAAGTAAACTGATAAAAAATGTAAACTGATTATTGAGATATTGAGATAACTGAGCCTAAACTTGACAGTATGGGGAATCTTTTATTAAAAATTGTACGGTATGCATTTTTTGATGTGTTGACCCAAAATGGAATTGTCTTTCCAA</canonical_amplicon>
		<polymorphic_amplicon>TATGAATTATCGGAGAACTTGAATACCGTAAAATCTGCAATGGAAGGGCTCCCCGTTCTTTTTGCTTCGATCCAATGTTTCTTGGTTCCAATAAAAGATTAAAAAAAAGTAAACTGATAAAAAATGTAAACTGATTATTGAGATATTGAGATAACTGAGCCTAAACTTGACAGTATGGGGAATCTTTTATTAAAARTTGTACGGTATGCATTTTTTGATGTGTTGACCCAAAATGGAATTGTCTTTCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16059</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>91909</contig_pos>
        <strand>+</strand>
        <context>GAGTGAAATG[C/G]TCTTATAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGGTAATTAAATAGAGAGCGAACATGGAGAAGACGAAGATGAGTGAAATG</left_flank>
        <right_flank>TCTTATAAATATAATTTTGTTAATGTATAACGAAGAAGCTTAGAACTTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATTTTCATGTTAATCATCATGATTTTCTGCACAAAATAAAGTGATAAGTATTTCACCGTACGAACGTACACCCCATTTAAAAACTTCATCTTTTATTACTCATACTTTTCCCAAAACCCACTCCAAAAAATCCTAATTACTATCTCGATTCCATTTTCTCCCGTTTTTCTCATCTTTCAACCCATTTGATTTTTCTAATGCTACTTGAACAAACACATTGCCTAATATAGGAAAGAATCAAATGCGCGAGAGAGTGCTAATTGAGTGGATAAAAGATGGCATACTAGTAAAAGAAGTAGTAGCTGACCTCGTTTTGAGTACTTCTTCTTCTTCTTCTTCTTCTCCAGAGGGTAATGGGATTGAGCATATGGTATATGCGAACGGGTAAAGAGCTCATGCGAGAATGAAGAAGATGGAAAAGAAAGTCAGAAGGAATAACTACGCAACGGGTAATTAAATAGAGAGCGAACATGGAGAAGACGAAGATGAGTGAAATGGTCTTATAAATATAATTTTGTTAATGTATAACGAAGAAGCTTAGAACTTATTTACCACAAATCAGAAATTGGAAGAATCGGGAATCTCCAGAATAGAGAAAGTTTCAAAGTTTCAGAACCTCAAAATTTCAGATTTTCAGAGTTTGATAACTTTAGAATCCAGATTTTTAGACTTTTATAATTTCAGATTTTTAGAATTTCAGAATTTCAAAATTTCAACATTTCAGAATTACGAAACTTCAGGTGGGTACCAAACGTTACCATAAGATTTTTCAGAACTCAAAAAAAAAAAACCCAAAAACATATATTTGGTTCATATAATCAGAATCTCCTTCAGACCCCTCTCAATTTCTTGATTGTTTACAAATCATGCTCAAATGACTCCGATCAAGTCTTGCGTAACAAATCCCGACAGGTACCATCTCTTACTGTTTTCCCCCATTTTTACCTAGCAGCTGTTGTATTCCTTTTCTTCTCCCTGCTTACTGTCTCCAGATGCTT</canonical>
            <polymorphic>TCATTTTCATGTTAATCATCATGATTTTCTGCACAAAATAAAGTGATAAGTATTTCACCGTACGAACGTACACCCCATTTAAAAACTTCATCTTTTATTACTCATACTTTTCCCAAAACCCACTCCAAAAAATCCTAATTACTATCTCGATTCCATTTTCTCCCGTTTTTCTCATCTTTCAACCCATTTGATTTTTCTAATGCTACTTGAACAAACACATTGCCTAATATAGGAAAGAATCAAATGCGCGAGAGAGTGCTAATTGAGTGGATAAAAGATGGCATACTAGTAAAAGAAGTAGTAGCTGACCTCGTTTTGAGTACTTCTTCTTCTTCTTCTTCTTCTCCAGAGGGTAATGGGATTGAGCATATGGTATATGCGAACGGGTAAAGAGCTCATGCGAGAATGAAGAAGATGGAAAAGAAAGTCAGAAGGAATAACTACGCAACGGGTAATTAAATAGAGAGCGAACATGGAGAAGACGAAGATGAGTGAAATGSTCTTATAAATATAATTTTGTTAATGTATAACGAAGAAGCTTAGAACTTATTTACCACAAATCAGAAATTGGAAGAATCGGGAATCTCCAGAATAGAGAAAGTTTCAAAGTTTCAGAACCTCAAAATTTCAGATTTTCAGAGTTTGATAACTTTAGAATCCAGATTTTTAGACTTTTATAATTTCAGATTTTTAGAATTTCAGAATTTCAAAATTTCAACATTTCAGAATTACGAAACTTCAGGTGGGTACCAAACGTTACCATAAGATTTTTCAGAACTCAAAAAAAAAAAACCCAAAAACATATATTTGGTTCATATAATCAGAATCTCCTTCAGACCCCTCTCAATTTCTTGATTGTTTACAAATCATGCTCAAATGACTCCGATCAAGTCTTGCGTAACAAATCCCGACAGGTACCATCTCTTACTGTTTTCCCCCATTTTTACCTAGCAGCTGTTGTATTCCTTTTCTTCTCCCTGCTTACTGTCTCCAGATGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGGATTGAGCATATGGTAT</pcr_primer_p1>
		<pcr_primer_p2>TGAAACTTTCTCTATTCTGGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGGATTGAGCATATGGTATATGCGAACGGGTAAAGAGCTCATGCGAGAATGAAGAAGATGGAAAAGAAAGTCAGAAGGAATAACTACGCAACGGGTAATTAAATAGAGAGCGAACATGGAGAAGACGAAGATGAGTGAAATGGTCTTATAAATATAATTTTGTTAATGTATAACGAAGAAGCTTAGAACTTATTTACCACAAATCAGAAATTGGAAGAATCGGGAATCTCCAGAATAGAGAAAGTTTCA</canonical_amplicon>
		<polymorphic_amplicon>TGGGATTGAGCATATGGTATATGCGAACGGGTAAAGAGCTCATGCGAGAATGAAGAAGATGGAAAAGAAAGTCAGAAGGAATAACTACGCAACGGGTAATTAAATAGAGAGCGAACATGGAGAAGACGAAGATGAGTGAAATGSTCTTATAAATATAATTTTGTTAATGTATAACGAAGAAGCTTAGAACTTATTTACCACAAATCAGAAATTGGAAGAATCGGGAATCTCCAGAATAGAGAAAGTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16080</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>157821</contig_pos>
        <strand>+</strand>
        <context>TCTTCGACCT[C/T]TCTGGATACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTGTTAGAGACAATACGGTATTTTCAAACAGATACGATGTCTTCGACCT</left_flank>
        <right_flank>TCTGGATACTTTGTTCTCTTTTTGTTTTAACCTAAAATTTTAACCTAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCGGTCCGGTGGAAAAATATCGAAGAAAAAGAAAAAAGGAAAACGGAGAGTCTCAAAGGTGCCCAATCCGATATCATTTTTCTACTTATTATTGGACATTCTCTTTTCGTTTTCCTCTTGGTTCCAGTCGAGGAAAAACAGCCGTTCATCTTTTTCTCCGTTTTATTCTTATCTTTTTCGTTTTTGGCCCATTTTTCTTCCTTTCCTACTTCAAAAAATAAACATACATAAATTTCGAAAAACTTTCAAAATAGTTCCGTATTCCAACTAATAGATTAGCACACCGCGAAGCCTGTAATAGAAGGGCCCCTAACTTCTAACTTCAAATCCAAAGTTTTTCGGTACCTGTCAAGGATTTTAAAAAAGTGGACAACTAATAATTTTTATCATAACATCACAAACATTTTGTCAATCGATACATTTTTTGTCATAGGAATTTATGGGTTTCTGTTAGAGACAATACGGTATTTTCAAACAGATACGATGTCTTCGACCTCTCTGGATACTTTGTTCTCTTTTTGTTTTAACCTAAAATTTTAACCTAAAAATTGCGTTTCTACTTTGTTACTTTCCGTTTCAATGAGCTCAAAAAAAGGGGGATATTCTAGACAAAAGGAGATACATTCTATTGTTTGTTTGTGAATTAGTGATAAAGAAACAGGGCACTTCTCTTCAAGGATCATCAGAAATTTTCATCTCATTGAGCACATTCTGCTTACTATTAGTCTTCTTCTACTTTTCCAAAGTTCACTAGAGAGCTTGAAACTTTGAAAAAAATGTGGGCTAAAACTTCAAAGCATTTAGCCATTCTATTTTCAGCTAATGTTAAACAAGGAACTTCTTTATTTTCCTTATCTCATAGTCAGCTCTTTTTTTGTTTTTTGCTCTTTAAACTTCCAGTTTTCATGCTTCTCTTTCTTGTTTTTTTGGGCATCTGACCCGTTGCTCCCGATTTCTGGTGGTTCCTTAATTCTCTCTTCTTTTCTCAATTTGATTT</canonical>
            <polymorphic>TTTCCGGTCCGGTGGAAAAATATCGAAGAAAAAGAAAAAAGGAAAACGGAGAGTCTCAAAGGTGCCCAATCCGATATCATTTTTCTACTTATTATTGGACATTCTCTTTTCGTTTTCCTCTTGGTTCCAGTCGAGGAAAAACAGCCGTTCATCTTTTTCTCCGTTTTATTCTTATCTTTTTCGTTTTTGGCCCATTTTTCTTCCTTTCCTACTTCAAAAAATAAACATACATAAATTTCGAAAAACTTTCAAAATAGTTCCGTATTCCAACTAATAGATTAGCACACCGCGAAGCCTGTAATAGAAGGGCCCCTAACTTCTAACTTCAAATCCAAAGTTTTTCGGTACCTGTCAAGGATTTTAAAAAAGTGGACAACTAATAATTTTTATCATAACATCACAAACATTTTGTCAATCGATACATTTTTTGTCATAGGAATTTATGGGTTTCTGTTAGAGACAATACGGTATTTTCAAACAGATACGATGTCTTCGACCTYTCTGGATACTTTGTTCTCTTTTTGTTTTAACCTAAAATTTTAACCTAAAAATTGCGTTTCTACTTTGTTACTTTCCGTTTCAATGAGCTCAAAAAAAGGGGGATATTCTAGACAAAAGGAGATACATTCTATTGTTTGTTTGTGAATTAGTGATAAAGAAACAGGGCACTTCTCTTCAAGGATCATCAGAAATTTTCATCTCATTGAGCACATTCTGCTTACTATTAGTCTTCTTCTACTTTTCCAAAGTTCACTAGAGAGCTTGAAACTTTGAAAAAAATGTGGGCTAAAACTTCAAAGCATTTAGCCATTCTATTTTCAGCTAATGTTAAACAAGGAACTTCTTTATTTTCCTTATCTCATAGTCAGCTCTTTTTTTGTTTTTTGCTCTTTAAACTTCCAGTTTTCATGCTTCTCTTTCTTGTTTTTTTGGGCATCTGACCCGTTGCTCCCGATTTCTGGTGGTTCCTTAATTCTCTCTTCTTTTCTCAATTTGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGGTTTCTGTTAGAGACAATAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTCTGATGATCCTTGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGGTTTCTGTTAGAGACAATACGGTATTTTCAAACAGATACGATGTCTTCGACCTCTCTGGATACTTTGTTCTCTTTTTGTTTTAACCTAAAATTTTAACCTAAAAATTGCGTTTCTACTTTGTTACTTTCCGTTTCAATGAGCTCAAAAAAAGGGGGATATTCTAGACAAAAGGAGATACATTCTATTGTTTGTTTGTGAATTAGTGATAAAGAAACAGGGCACTTCTCTTCAAGGATCATCAGAAAT</canonical_amplicon>
		<polymorphic_amplicon>TGGGTTTCTGTTAGAGACAATACGGTATTTTCAAACAGATACGATGTCTTCGACCTYTCTGGATACTTTGTTCTCTTTTTGTTTTAACCTAAAATTTTAACCTAAAAATTGCGTTTCTACTTTGTTACTTTCCGTTTCAATGAGCTCAAAAAAAGGGGGATATTCTAGACAAAAGGAGATACATTCTATTGTTTGTTTGTGAATTAGTGATAAAGAAACAGGGCACTTCTCTTCAAGGATCATCAGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16081</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>158038</contig_pos>
        <strand>+</strand>
        <context>AGCACATTCT[G/T]CTTACTATTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CACTTCTCTTCAAGGATCATCAGAAATTTTCATCTCATTGAGCACATTCT</left_flank>
        <right_flank>CTTACTATTAGTCTTCTTCTACTTTTCCAAAGTTCACTAGAGAGCTTGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATAAACATACATAAATTTCGAAAAACTTTCAAAATAGTTCCGTATTCCAACTAATAGATTAGCACACCGCGAAGCCTGTAATAGAAGGGCCCCTAACTTCTAACTTCAAATCCAAAGTTTTTCGGTACCTGTCAAGGATTTTAAAAAAGTGGACAACTAATAATTTTTATCATAACATCACAAACATTTTGTCAATCGATACATTTTTTGTCATAGGAATTTATGGGTTTCTGTTAGAGACAATACGGTATTTTCAAACAGATACGATGTCTTCGACCTCTCTGGATACTTTGTTCTCTTTTTGTTTTAACCTAAAATTTTAACCTAAAAATTGCGTTTCTACTTTGTTACTTTCCGTTTCAATGAGCTCAAAAAAAGGGGGATATTCTAGACAAAAGGAGATACATTCTATTGTTTGTTTGTGAATTAGTGATAAAGAAACAGGGCACTTCTCTTCAAGGATCATCAGAAATTTTCATCTCATTGAGCACATTCTGCTTACTATTAGTCTTCTTCTACTTTTCCAAAGTTCACTAGAGAGCTTGAAACTTTGAAAAAAATGTGGGCTAAAACTTCAAAGCATTTAGCCATTCTATTTTCAGCTAATGTTAAACAAGGAACTTCTTTATTTTCCTTATCTCATAGTCAGCTCTTTTTTTGTTTTTTGCTCTTTAAACTTCCAGTTTTCATGCTTCTCTTTCTTGTTTTTTTGGGCATCTGACCCGTTGCTCCCGATTTCTGGTGGTTCCTTAATTCTCTCTTCTTTTCTCAATTTGATTTTCGCCTGTTTTTGATACAGAATTAGGAGATGGAACGTTATCTTTGATTTTCTTTTTGACAGTGGAAAGTTCACCAACCTTTCTGACAACTGGTGTCTAGAAGTTCGTGTTTTCTTGAATAGAGTTGTAGGATTCTGGAATTTTCGAGTATTGTGCGACAAATCCATTGTTGTATTCTTGTCTATCTCGAAAGCCCTAACACCATAGTTAGCTAGCTG</canonical>
            <polymorphic>AAAATAAACATACATAAATTTCGAAAAACTTTCAAAATAGTTCCGTATTCCAACTAATAGATTAGCACACCGCGAAGCCTGTAATAGAAGGGCCCCTAACTTCTAACTTCAAATCCAAAGTTTTTCGGTACCTGTCAAGGATTTTAAAAAAGTGGACAACTAATAATTTTTATCATAACATCACAAACATTTTGTCAATCGATACATTTTTTGTCATAGGAATTTATGGGTTTCTGTTAGAGACAATACGGTATTTTCAAACAGATACGATGTCTTCGACCTCTCTGGATACTTTGTTCTCTTTTTGTTTTAACCTAAAATTTTAACCTAAAAATTGCGTTTCTACTTTGTTACTTTCCGTTTCAATGAGCTCAAAAAAAGGGGGATATTCTAGACAAAAGGAGATACATTCTATTGTTTGTTTGTGAATTAGTGATAAAGAAACAGGGCACTTCTCTTCAAGGATCATCAGAAATTTTCATCTCATTGAGCACATTCTKCTTACTATTAGTCTTCTTCTACTTTTCCAAAGTTCACTAGAGAGCTTGAAACTTTGAAAAAAATGTGGGCTAAAACTTCAAAGCATTTAGCCATTCTATTTTCAGCTAATGTTAAACAAGGAACTTCTTTATTTTCCTTATCTCATAGTCAGCTCTTTTTTTGTTTTTTGCTCTTTAAACTTCCAGTTTTCATGCTTCTCTTTCTTGTTTTTTTGGGCATCTGACCCGTTGCTCCCGATTTCTGGTGGTTCCTTAATTCTCTCTTCTTTTCTCAATTTGATTTTCGCCTGTTTTTGATACAGAATTAGGAGATGGAACGTTATCTTTGATTTTCTTTTTGACAGTGGAAAGTTCACCAACCTTTCTGACAACTGGTGTCTAGAAGTTCGTGTTTTCTTGAATAGAGTTGTAGGATTCTGGAATTTTCGAGTATTGTGCGACAAATCCATTGTTGTATTCTTGTCTATCTCGAAAGCCCTAACACCATAGTTAGCTAGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCANNNNNTGC</site>
                <isoschizomers>
                    <enzyme>ApaBI</enzyme>
                    <enzyme>BstAPI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTGCGTTTCTACTTTGTTA</pcr_primer_p1>
		<pcr_primer_p2>GAAGTTTTAGCCCACATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAATTGCGTTTCTACTTTGTTACTTTCCGTTTCAATGAGCTCAAAAAAAGGGGGATATTCTAGACAAAAGGAGATACATTCTATTGTTTGTTTGTGAATTAGTGATAAAGAAACAGGGCACTTCTCTTCAAGGATCATCAGAAATTTTCATCTCATTGAGCACATTCTGCTTACTATTAGTCTTCTTCTACTTTTCCAAAGTTCACTAGAGAGCTTGAAACTTTGAAAAAAATGTGGGCTAAAACTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAATTGCGTTTCTACTTTGTTACTTTCCGTTTCAATGAGCTCAAAAAAAGGGGGATATTCTAGACAAAAGGAGATACATTCTATTGTTTGTTTGTGAATTAGTGATAAAGAAACAGGGCACTTCTCTTCAAGGATCATCAGAAATTTTCATCTCATTGAGCACATTCTKCTTACTATTAGTCTTCTTCTACTTTTCCAAAGTTCACTAGAGAGCTTGAAACTTTGAAAAAAATGTGGGCTAAAACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16120</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>290967</contig_pos>
        <strand></strand>
        <context>AATTCGTTTA[G/A]AAGAAATAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAACGGTACTCTAAAAAAGGAGATCGACAAAAAAAAAATAAATTCGTTTA</left_flank>
        <right_flank>AAGAAATAAATGATAAGAAAACGGTTGAAAAATAGGAAAATCGGAAACCG</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATTAGAGCCAGCTTTTATTAGAGCAAGTACGATATGTGGTATTGAATAAACCCGACAATTTCAAAACCAAATGATTTACTATAAAACCTGTAATAGAAGGTCCCCCACACTAACAAGTTTGAGCCAGTTTATCTTGGCTCTTGTGCAAGGTTTGACAGGAGCATAGATATATTGGCTCATAGTTTAAGATTTCCTTCTATTACAGTGTCTACGGTATCTTCTTTTTGAAGTTACCGTATCAAGATATCGTAATCGTAGTTACAAGATAAATGTGAAACTAAAATTCAGAATAAAACATTGATTCGACGAACTTCGTCTAACAAGAGAATTCAAGAATGTTCTTGGGTTCAAATTAAAAATGGACTGTCCACCGAACCACTTCTTCTTCTAATCAAATGGCCACTTTCTCAATCGAATAACCGAAAAAAAAGAGACGGAAAACTGATGCAACGGTACTCTAAAAAAGGAGATCGACAAAAAAAAAATAAATTCGTTTAGAAGAAATAAATGATAAGAAAACGGTTGAAAAATAGGAAAATCGGAAACCGGAGAGGAAGAAAAAAACTAACAAAAAACTAATCAGTTTTTTTAGAAAAAAAAACCGTTTTCTTTTGTTTTTTTTTTCAAACAATAGAAAGAAAACAGGGCTTGGCTTTTTTATTGCCGATTCATAAAAACTGTGTTTCTCTGTTTTCTTATAAGGAACAGAGAAAACGACGGGGGATGGAAGGAGTTAAAGAAGAAGAAGGACCGCCGAAACAATTTGAGAGATAAGAGTGATAAGAGGAGATAGAGAGACGTAGAGTTTTTTGAAAGACGTTCTCGGTAAAAGCAGGAGGACGAAAAGGAATATGAAGAAGAGAAGAAGAAGAAACAACGGAAAGGAGGAAATGAGAGAAAATGTACTTGAGGACCAATTGGTGATTGGAAATAAAAGTGTCATGTGAGAAATAAAAAATAATTAAACTTCAGAAATTGACAATATACTTTAAACTATC</canonical>
            <polymorphic>TTATTAGAGCCAGCTTTTATTAGAGCAAGTACGATATGTGGTATTGAATAAACCCGACAATTTCAAAACCAAATGATTTACTATAAAACCTGTAATAGAAGGTCCCCCACACTAACAAGTTTGAGCCAGTTTATCTTGGCTCTTGTGCAAGGTTTGACAGGAGCATAGATATATTGGCTCATAGTTTAAGATTTCCTTCTATTACAGTGTCTACGGTATCTTCTTTTTGAAGTTACCGTATCAAGATATCGTAATCGTAGTTACAAGATAAATGTGAAACTAAAATTCAGAATAAAACATTGATTCGACGAACTTCGTCTAACAAGAGAATTCAAGAATGTTCTTGGGTTCAAATTAAAAATGGACTGTCCACCGAACCACTTCTTCTTCTAATCAAATGGCCACTTTCTCAATCGAATAACCGAAAAAAAAGAGACGGAAAACTGATGCAACGGTACTCTAAAAAAGGAGATCGACAAAAAAAAAATAAATTCGTTTARAAGAAATAAATGATAAGAAAACGGTTGAAAAATAGGAAAATCGGAAACCGGAGAGGAAGAAAAAAACTAACAAAAAACTAATCAGTTTTTTTAGAAAAAAAAACCGTTTTCTTTTGTTTTTTTTTTCAAACAATAGAAAGAAAACAGGGCTTGGCTTTTTTATTGCCGATTCATAAAAACTGTGTTTCTCTGTTTTCTTATAAGGAACAGAGAAAACGACGGGGGATGGAAGGAGTTAAAGAAGAAGAAGGACCGCCGAAACAATTTGAGAGATAAGAGTGATAAGAGGAGATAGAGAGACGTAGAGTTTTTTGAAAGACGTTCTCGGTAAAAGCAGGAGGACGAAAAGGAATATGAAGAAGAGAAGAAGAAGAAACAACGGAAAGGAGGAAATGAGAGAAAATGTACTTGAGGACCAATTGGTGATTGGAAATAAAAGTGTCATGTGAGAAATAAAAAATAATTAAACTTCAGAAATTGACAATATACTTTAAACTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGAGACGGAAAACTGAT</pcr_primer_p1>
		<pcr_primer_p2>TTTATGAATCGGCAATAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGAGACGGAAAACTGATGCAACGGTACTCTAAAAAAGGAGATCGACAAAAAAAAAATAAATTCGTTTAGAAGAAATAAATGATAAGAAAACGGTTGAAAAATAGGAAAATCGGAAACCGGAGAGGAAGAAAAAAACTAACAAAAAACTAATCAGTTTTTTTAGAAAAAAAAACCGTTTTCTTTTGTTTTTTTTTTCAAACAATAGAAAGAAAACAGGGCTTGGCTTTTTTATTGCCGATTCATAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGAGACGGAAAACTGATGCAACGGTACTCTAAAAAAGGAGATCGACAAAAAAAAAATAAATTCGTTTARAAGAAATAAATGATAAGAAAACGGTTGAAAAATAGGAAAATCGGAAACCGGAGAGGAAGAAAAAAACTAACAAAAAACTAATCAGTTTTTTTAGAAAAAAAAACCGTTTTCTTTTGTTTTTTTTTTCAAACAATAGAAAGAAAACAGGGCTTGGCTTTTTTATTGCCGATTCATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16121</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>291295</contig_pos>
        <strand></strand>
        <context>GACGTTCTCG[G/A]TAAAAGCAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGTGATAAGAGGAGATAGAGAGACGTAGAGTTTTTTGAAAGACGTTCTCG</left_flank>
        <right_flank>TAAAAGCAGGAGGACGAAAAGGAATATGAAGAAGAGAAGAAGAAGAAACA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCAAGAATGTTCTTGGGTTCAAATTAAAAATGGACTGTCCACCGAACCACTTCTTCTTCTAATCAAATGGCCACTTTCTCAATCGAATAACCGAAAAAAAAGAGACGGAAAACTGATGCAACGGTACTCTAAAAAAGGAGATCGACAAAAAAAAAATAAATTCGTTTAGAAGAAATAAATGATAAGAAAACGGTTGAAAAATAGGAAAATCGGAAACCGGAGAGGAAGAAAAAAACTAACAAAAAACTAATCAGTTTTTTTAGAAAAAAAAACCGTTTTCTTTTGTTTTTTTTTTCAAACAATAGAAAGAAAACAGGGCTTGGCTTTTTTATTGCCGATTCATAAAAACTGTGTTTCTCTGTTTTCTTATAAGGAACAGAGAAAACGACGGGGGATGGAAGGAGTTAAAGAAGAAGAAGGACCGCCGAAACAATTTGAGAGATAAGAGTGATAAGAGGAGATAGAGAGACGTAGAGTTTTTTGAAAGACGTTCTCGGTAAAAGCAGGAGGACGAAAAGGAATATGAAGAAGAGAAGAAGAAGAAACAACGGAAAGGAGGAAATGAGAGAAAATGTACTTGAGGACCAATTGGTGATTGGAAATAAAAGTGTCATGTGAGAAATAAAAAATAATTAAACTTCAGAAATTGACAATATACTTTAAACTATCTTTGGAAGATGCTCAAATCCTTTTGGAAATCCGAAAACGGGATGAGTCACAATCAGGAAAAAAAAAACTATGAAAACGGGATGAGTCACAATCAGGAATCAGTAATTTGGAAGGGAACCAAAACCTAGTGAATAGAAATTTAGAGAAATCGGATAAGGTTCAGGGTTTGAAAAGAAAATTCTAAATTTTTACAACATGAAAACGGAAATTTTGAAAAATTCCGATCTAATTTAAATCAGTGTCTTAGGCTGAGTTAATTTTAATGCTCTAGTCGGTTGTGCTGGTCCCTATAATTTTTTTTTCGGTCCTTTGATTTTTCTTTGGTCGT</canonical>
            <polymorphic>AATTCAAGAATGTTCTTGGGTTCAAATTAAAAATGGACTGTCCACCGAACCACTTCTTCTTCTAATCAAATGGCCACTTTCTCAATCGAATAACCGAAAAAAAAGAGACGGAAAACTGATGCAACGGTACTCTAAAAAAGGAGATCGACAAAAAAAAAATAAATTCGTTTAGAAGAAATAAATGATAAGAAAACGGTTGAAAAATAGGAAAATCGGAAACCGGAGAGGAAGAAAAAAACTAACAAAAAACTAATCAGTTTTTTTAGAAAAAAAAACCGTTTTCTTTTGTTTTTTTTTTCAAACAATAGAAAGAAAACAGGGCTTGGCTTTTTTATTGCCGATTCATAAAAACTGTGTTTCTCTGTTTTCTTATAAGGAACAGAGAAAACGACGGGGGATGGAAGGAGTTAAAGAAGAAGAAGGACCGCCGAAACAATTTGAGAGATAAGAGTGATAAGAGGAGATAGAGAGACGTAGAGTTTTTTGAAAGACGTTCTCGRTAAAAGCAGGAGGACGAAAAGGAATATGAAGAAGAGAAGAAGAAGAAACAACGGAAAGGAGGAAATGAGAGAAAATGTACTTGAGGACCAATTGGTGATTGGAAATAAAAGTGTCATGTGAGAAATAAAAAATAATTAAACTTCAGAAATTGACAATATACTTTAAACTATCTTTGGAAGATGCTCAAATCCTTTTGGAAATCCGAAAACGGGATGAGTCACAATCAGGAAAAAAAAAACTATGAAAACGGGATGAGTCACAATCAGGAATCAGTAATTTGGAAGGGAACCAAAACCTAGTGAATAGAAATTTAGAGAAATCGGATAAGGTTCAGGGTTTGAAAAGAAAATTCTAAATTTTTACAACATGAAAACGGAAATTTTGAAAAATTCCGATCTAATTTAAATCAGTGTCTTAGGCTGAGTTAATTTTAATGCTCTAGTCGGTTGTGCTGGTCCCTATAATTTTTTTTTCGGTCCTTTGATTTTTCTTTGGTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATAAGGAACAGAGAAAACGAC</pcr_primer_p1>
		<pcr_primer_p2>ACATGACACTTTTATTTCCAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTATAAGGAACAGAGAAAACGACGGGGGATGGAAGGAGTTAAAGAAGAAGAAGGACCGCCGAAACAATTTGAGAGATAAGAGTGATAAGAGGAGATAGAGAGACGTAGAGTTTTTTGAAAGACGTTCTCGGTAAAAGCAGGAGGACGAAAAGGAATATGAAGAAGAGAAGAAGAAGAAACAACGGAAAGGAGGAAATGAGAGAAAATGTACTTGAGGACCAATTGGTGATTGGAAATAAAAGTGTCATGT</canonical_amplicon>
		<polymorphic_amplicon>TTATAAGGAACAGAGAAAACGACGGGGGATGGAAGGAGTTAAAGAAGAAGAAGGACCGCCGAAACAATTTGAGAGATAAGAGTGATAAGAGGAGATAGAGAGACGTAGAGTTTTTTGAAAGACGTTCTCGRTAAAAGCAGGAGGACGAAAAGGAATATGAAGAAGAGAAGAAGAAGAAACAACGGAAAGGAGGAAATGAGAGAAAATGTACTTGAGGACCAATTGGTGATTGGAAATAAAAGTGTCATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16122</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>291155</contig_pos>
        <strand></strand>
        <context>AACTGTGTTT[C/T]TCTGTTTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGAAAACAGGGCTTGGCTTTTTTATTGCCGATTCATAAAAACTGTGTTT</left_flank>
        <right_flank>TCTGTTTTCTTATAAGGAACAGAGAAAACGACGGGGGATGGAAGGAGTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATTTCCTTCTATTACAGTGTCTACGGTATCTTCTTTTTGAAGTTACCGTATCAAGATATCGTAATCGTAGTTACAAGATAAATGTGAAACTAAAATTCAGAATAAAACATTGATTCGACGAACTTCGTCTAACAAGAGAATTCAAGAATGTTCTTGGGTTCAAATTAAAAATGGACTGTCCACCGAACCACTTCTTCTTCTAATCAAATGGCCACTTTCTCAATCGAATAACCGAAAAAAAAGAGACGGAAAACTGATGCAACGGTACTCTAAAAAAGGAGATCGACAAAAAAAAAATAAATTCGTTTAGAAGAAATAAATGATAAGAAAACGGTTGAAAAATAGGAAAATCGGAAACCGGAGAGGAAGAAAAAAACTAACAAAAAACTAATCAGTTTTTTTAGAAAAAAAAACCGTTTTCTTTTGTTTTTTTTTTCAAACAATAGAAAGAAAACAGGGCTTGGCTTTTTTATTGCCGATTCATAAAAACTGTGTTTCTCTGTTTTCTTATAAGGAACAGAGAAAACGACGGGGGATGGAAGGAGTTAAAGAAGAAGAAGGACCGCCGAAACAATTTGAGAGATAAGAGTGATAAGAGGAGATAGAGAGACGTAGAGTTTTTTGAAAGACGTTCTCGGTAAAAGCAGGAGGACGAAAAGGAATATGAAGAAGAGAAGAAGAAGAAACAACGGAAAGGAGGAAATGAGAGAAAATGTACTTGAGGACCAATTGGTGATTGGAAATAAAAGTGTCATGTGAGAAATAAAAAATAATTAAACTTCAGAAATTGACAATATACTTTAAACTATCTTTGGAAGATGCTCAAATCCTTTTGGAAATCCGAAAACGGGATGAGTCACAATCAGGAAAAAAAAAACTATGAAAACGGGATGAGTCACAATCAGGAATCAGTAATTTGGAAGGGAACCAAAACCTAGTGAATAGAAATTTAGAGAAATCGGATAAGGTTCAGGGTTTGAAAAGAAAATTCTAAATTT</canonical>
            <polymorphic>AGATTTCCTTCTATTACAGTGTCTACGGTATCTTCTTTTTGAAGTTACCGTATCAAGATATCGTAATCGTAGTTACAAGATAAATGTGAAACTAAAATTCAGAATAAAACATTGATTCGACGAACTTCGTCTAACAAGAGAATTCAAGAATGTTCTTGGGTTCAAATTAAAAATGGACTGTCCACCGAACCACTTCTTCTTCTAATCAAATGGCCACTTTCTCAATCGAATAACCGAAAAAAAAGAGACGGAAAACTGATGCAACGGTACTCTAAAAAAGGAGATCGACAAAAAAAAAATAAATTCGTTTAGAAGAAATAAATGATAAGAAAACGGTTGAAAAATAGGAAAATCGGAAACCGGAGAGGAAGAAAAAAACTAACAAAAAACTAATCAGTTTTTTTAGAAAAAAAAACCGTTTTCTTTTGTTTTTTTTTTCAAACAATAGAAAGAAAACAGGGCTTGGCTTTTTTATTGCCGATTCATAAAAACTGTGTTTYTCTGTTTTCTTATAAGGAACAGAGAAAACGACGGGGGATGGAAGGAGTTAAAGAAGAAGAAGGACCGCCGAAACAATTTGAGAGATAAGAGTGATAAGAGGAGATAGAGAGACGTAGAGTTTTTTGAAAGACGTTCTCGGTAAAAGCAGGAGGACGAAAAGGAATATGAAGAAGAGAAGAAGAAGAAACAACGGAAAGGAGGAAATGAGAGAAAATGTACTTGAGGACCAATTGGTGATTGGAAATAAAAGTGTCATGTGAGAAATAAAAAATAATTAAACTTCAGAAATTGACAATATACTTTAAACTATCTTTGGAAGATGCTCAAATCCTTTTGGAAATCCGAAAACGGGATGAGTCACAATCAGGAAAAAAAAAACTATGAAAACGGGATGAGTCACAATCAGGAATCAGTAATTTGGAAGGGAACCAAAACCTAGTGAATAGAAATTTAGAGAAATCGGATAAGGTTCAGGGTTTGAAAAGAAAATTCTAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAATGATAAGAAAACGGTTGA</pcr_primer_p1>
		<pcr_primer_p2>GTCCTTCTTCTTCTTTAACTCCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATAAATGATAAGAAAACGGTTGAAAAATAGGAAAATCGGAAACCGGAGAGGAAGAAAAAAACTAACAAAAAACTAATCAGTTTTTTTAGAAAAAAAAACCGTTTTCTTTTGTTTTTTTTTTCAAACAATAGAAAGAAAACAGGGCTTGGCTTTTTTATTGCCGATTCATAAAAACTGTGTTTCTCTGTTTTCTTATAAGGAACAGAGAAAACGACGGGGGATGGAAGGAGTTAAAGAAGAAGAAGGAC</canonical_amplicon>
		<polymorphic_amplicon>ATAAATGATAAGAAAACGGTTGAAAAATAGGAAAATCGGAAACCGGAGAGGAAGAAAAAAACTAACAAAAAACTAATCAGTTTTTTTAGAAAAAAAAACCGTTTTCTTTTGTTTTTTTTTTCAAACAATAGAAAGAAAACAGGGCTTGGCTTTTTTATTGCCGATTCATAAAAACTGTGTTTYTCTGTTTTCTTATAAGGAACAGAGAAAACGACGGGGGATGGAAGGAGTTAAAGAAGAAGAAGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16144</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>330890</contig_pos>
        <strand>+</strand>
        <context>CAACATCCTG[C/T]TGAAAAAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTGACGGCCTGAACAATTGGGCGGATAACTTGACGGCTCAACATCCTG</left_flank>
        <right_flank>TGAAAAAAGAAAGATTTGACCTTATTATGTTTGAGCAAGAATTAGAGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAATCGGTTTTTTGAAAGAGTATCAGCACTAGAGCTGGACAAATATATTCAGTCCTTTGAAAGGGAACCAAAGAGACCCAAAAATCTTTTATTTCTCGGTATAGATCGGACCATTACGTTGTAGACAGAAAATCAATTCCAAGATATGTCTCGAAGGTAACCAGAAGATAATTTGGCTATCGCAGAACGGAAAATTAAATTTTACGGACTTGCCTGCTCGAACAAAGTGATTTGATTTGAATCATAAAACAAAGTATTTTTAAAACTCTCCAGTCTCTTTTCAACACGATTTCTCAAAAATTCAAATTCTTTTGAAGAAAACATGTTGCATGATTTTTTTTAGTAATATTGTAAATCTTACAGCGGATGCCCAACCATCGTTAACGAAAGTATTTGGTCCTTGTCCGGTGAAAGTGACAGCCGATGGAGAGTGGCTGCTGTGGCCCTTTCTGACGGCCTGAACAATTGGGCGGATAACTTGACGGCTCAACATCCTGTTGAAAAAAGAAAGATTTGACCTTATTATGTTTGAGCAAGAATTAGAGAAAATGAAGATCTGAATTCGTGGTATCTTAAAAATTTTTATACAAGATAATAAAAAATGCTAGTCATGATATAAACAAGTTTTCGAACGTATTTATGCATGCATGTAGTAATTTTTTGTTTCTGAAAATAAATTTCACGAATAATCTTAATACGAATCAATTTTTTTACAAGGTCCTATATTTAACTCGGTCGGGAAAATAGCTTGAGTGTATATGTTCAAAGATGTGTTTTGAAGTTAATTATCGATTAGGATGAGAAAAATTTAAAACAAAAACATTTTAAGCTTGAAATATGAGAATTTAAGCAGAAAAGTTGGGCAGTCCGATCAAAATGAGTTACTTTAGCTGCGGAGCGGTCGCGCGCTGCGTGCGCTCTAAAGGGGCGCACTTCCTGAAATTTTTTTTGTCAATTTTTTTTCAACTGAAATTCAGGTTTTTATTGAGTTCAAATTT</canonical>
            <polymorphic>ATGAATCGGTTTTTTGAAAGAGTATCAGCACTAGAGCTGGACAAATATATTCAGTCCTTTGAAAGGGAACCAAAGAGACCCAAAAATCTTTTATTTCTCGGTATAGATCGGACCATTACGTTGTAGACAGAAAATCAATTCCAAGATATGTCTCGAAGGTAACCAGAAGATAATTTGGCTATCGCAGAACGGAAAATTAAATTTTACGGACTTGCCTGCTCGAACAAAGTGATTTGATTTGAATCATAAAACAAAGTATTTTTAAAACTCTCCAGTCTCTTTTCAACACGATTTCTCAAAAATTCAAATTCTTTTGAAGAAAACATGTTGCATGATTTTTTTTAGTAATATTGTAAATCTTACAGCGGATGCCCAACCATCGTTAACGAAAGTATTTGGTCCTTGTCCGGTGAAAGTGACAGCCGATGGAGAGTGGCTGCTGTGGCCCTTTCTGACGGCCTGAACAATTGGGCGGATAACTTGACGGCTCAACATCCTGYTGAAAAAAGAAAGATTTGACCTTATTATGTTTGAGCAAGAATTAGAGAAAATGAAGATCTGAATTCGTGGTATCTTAAAAATTTTTATACAAGATAATAAAAAATGCTAGTCATGATATAAACAAGTTTTCGAACGTATTTATGCATGCATGTAGTAATTTTTTGTTTCTGAAAATAAATTTCACGAATAATCTTAATACGAATCAATTTTTTTACAAGGTCCTATATTTAACTCGGTCGGGAAAATAGCTTGAGTGTATATGTTCAAAGATGTGTTTTGAAGTTAATTATCGATTAGGATGAGAAAAATTTAAAACAAAAACATTTTAAGCTTGAAATATGAGAATTTAAGCAGAAAAGTTGGGCAGTCCGATCAAAATGAGTTACTTTAGCTGCGGAGCGGTCGCGCGCTGCGTGCGCTCTAAAGGGGCGCACTTCCTGAAATTTTTTTTGTCAATTTTTTTTCAACTGAAATTCAGGTTTTTATTGAGTTCAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGTATTTGGTCCTTGTCC</pcr_primer_p1>
		<pcr_primer_p2>ACGTTCGAAAACTTGTTTATATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAGTATTTGGTCCTTGTCCGGTGAAAGTGACAGCCGATGGAGAGTGGCTGCTGTGGCCCTTTCTGACGGCCTGAACAATTGGGCGGATAACTTGACGGCTCAACATCCTGTTGAAAAAAGAAAGATTTGACCTTATTATGTTTGAGCAAGAATTAGAGAAAATGAAGATCTGAATTCGTGGTATCTTAAAAATTTTTATACAAGATAATAAAAAATGCTAGTCATGATATAAACAAGTTTTCGAACGT</canonical_amplicon>
		<polymorphic_amplicon>GAAAGTATTTGGTCCTTGTCCGGTGAAAGTGACAGCCGATGGAGAGTGGCTGCTGTGGCCCTTTCTGACGGCCTGAACAATTGGGCGGATAACTTGACGGCTCAACATCCTGYTGAAAAAAGAAAGATTTGACCTTATTATGTTTGAGCAAGAATTAGAGAAAATGAAGATCTGAATTCGTGGTATCTTAAAAATTTTTATACAAGATAATAAAAAATGCTAGTCATGATATAAACAAGTTTTCGAACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16145</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>330975</contig_pos>
        <strand>+</strand>
        <context>TTAAAAATTT[A/T]TATACAAGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCAAGAATTAGAGAAAATGAAGATCTGAATTCGTGGTATCTTAAAAATTT</left_flank>
        <right_flank>TATACAAGATAATAAAAAATGCTAGTCATGATATAAACAAGTTTTCGAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTTTTATTTCTCGGTATAGATCGGACCATTACGTTGTAGACAGAAAATCAATTCCAAGATATGTCTCGAAGGTAACCAGAAGATAATTTGGCTATCGCAGAACGGAAAATTAAATTTTACGGACTTGCCTGCTCGAACAAAGTGATTTGATTTGAATCATAAAACAAAGTATTTTTAAAACTCTCCAGTCTCTTTTCAACACGATTTCTCAAAAATTCAAATTCTTTTGAAGAAAACATGTTGCATGATTTTTTTTAGTAATATTGTAAATCTTACAGCGGATGCCCAACCATCGTTAACGAAAGTATTTGGTCCTTGTCCGGTGAAAGTGACAGCCGATGGAGAGTGGCTGCTGTGGCCCTTTCTGACGGCCTGAACAATTGGGCGGATAACTTGACGGCTCAACATCCTGTTGAAAAAAGAAAGATTTGACCTTATTATGTTTGAGCAAGAATTAGAGAAAATGAAGATCTGAATTCGTGGTATCTTAAAAATTTTTATACAAGATAATAAAAAATGCTAGTCATGATATAAACAAGTTTTCGAACGTATTTATGCATGCATGTAGTAATTTTTTGTTTCTGAAAATAAATTTCACGAATAATCTTAATACGAATCAATTTTTTTACAAGGTCCTATATTTAACTCGGTCGGGAAAATAGCTTGAGTGTATATGTTCAAAGATGTGTTTTGAAGTTAATTATCGATTAGGATGAGAAAAATTTAAAACAAAAACATTTTAAGCTTGAAATATGAGAATTTAAGCAGAAAAGTTGGGCAGTCCGATCAAAATGAGTTACTTTAGCTGCGGAGCGGTCGCGCGCTGCGTGCGCTCTAAAGGGGCGCACTTCCTGAAATTTTTTTTGTCAATTTTTTTTCAACTGAAATTCAGGTTTTTATTGAGTTCAAATTTTAATTTTTCTTTATGAAAAAAATCAATTTTTATAGCCAAAATGTCAAAACCGGGACGCCCAAACTTGTTTCTTGCCGGTAAACGA</canonical>
            <polymorphic>ATCTTTTATTTCTCGGTATAGATCGGACCATTACGTTGTAGACAGAAAATCAATTCCAAGATATGTCTCGAAGGTAACCAGAAGATAATTTGGCTATCGCAGAACGGAAAATTAAATTTTACGGACTTGCCTGCTCGAACAAAGTGATTTGATTTGAATCATAAAACAAAGTATTTTTAAAACTCTCCAGTCTCTTTTCAACACGATTTCTCAAAAATTCAAATTCTTTTGAAGAAAACATGTTGCATGATTTTTTTTAGTAATATTGTAAATCTTACAGCGGATGCCCAACCATCGTTAACGAAAGTATTTGGTCCTTGTCCGGTGAAAGTGACAGCCGATGGAGAGTGGCTGCTGTGGCCCTTTCTGACGGCCTGAACAATTGGGCGGATAACTTGACGGCTCAACATCCTGTTGAAAAAAGAAAGATTTGACCTTATTATGTTTGAGCAAGAATTAGAGAAAATGAAGATCTGAATTCGTGGTATCTTAAAAATTTWTATACAAGATAATAAAAAATGCTAGTCATGATATAAACAAGTTTTCGAACGTATTTATGCATGCATGTAGTAATTTTTTGTTTCTGAAAATAAATTTCACGAATAATCTTAATACGAATCAATTTTTTTACAAGGTCCTATATTTAACTCGGTCGGGAAAATAGCTTGAGTGTATATGTTCAAAGATGTGTTTTGAAGTTAATTATCGATTAGGATGAGAAAAATTTAAAACAAAAACATTTTAAGCTTGAAATATGAGAATTTAAGCAGAAAAGTTGGGCAGTCCGATCAAAATGAGTTACTTTAGCTGCGGAGCGGTCGCGCGCTGCGTGCGCTCTAAAGGGGCGCACTTCCTGAAATTTTTTTTGTCAATTTTTTTTCAACTGAAATTCAGGTTTTTATTGAGTTCAAATTTTAATTTTTCTTTATGAAAAAAATCAATTTTTATAGCCAAAATGTCAAAACCGGGACGCCCAAACTTGTTTCTTGCCGGTAAACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCAAGAATTAGAGAAAATGAA</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAACACATCTTTGAACATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGCAAGAATTAGAGAAAATGAAGATCTGAATTCGTGGTATCTTAAAAATTTTTATACAAGATAATAAAAAATGCTAGTCATGATATAAACAAGTTTTCGAACGTATTTATGCATGCATGTAGTAATTTTTTGTTTCTGAAAATAAATTTCACGAATAATCTTAATACGAATCAATTTTTTTACAAGGTCCTATATTTAACTCGGTCGGGAAAATAGCTTGAGTGTATATGTTCAAAGATGTGTTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GAGCAAGAATTAGAGAAAATGAAGATCTGAATTCGTGGTATCTTAAAAATTTWTATACAAGATAATAAAAAATGCTAGTCATGATATAAACAAGTTTTCGAACGTATTTATGCATGCATGTAGTAATTTTTTGTTTCTGAAAATAAATTTCACGAATAATCTTAATACGAATCAATTTTTTTACAAGGTCCTATATTTAACTCGGTCGGGAAAATAGCTTGAGTGTATATGTTCAAAGATGTGTTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16146</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>333296</contig_pos>
        <strand></strand>
        <context>TGAAATAGTA[C/T]YGAACAGTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTCAAAATAAAACTCAAAAAAGTTAGTTAATTATTCAGTGAAATAGTA</left_flank>
        <right_flank>TGAACAGTATAAAAAGTTCAGATAACGAATTGGAGCGGTTGCAGTGGAGC</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCATTAACTACCATGTTTTACTACATTCAGTGTTGTTTTTGTTACCGATTTGTTGTTATCCAGTTTTTATTTCCCTTTCATATTTACCACGTTCCTCTTTTTTTTCTAATTTGTTCAGTATTTCAATTTTCATATAAACGCACTTTCAAATTTAACGACTATGCTGGTACATACTTTTTCAGTCATCAGAGAAACTTTTTTCAATTCAGAGTGTTAGCAGAGGACCCAGAAGACACGAATATCGATCAGAAGTTGAAACTATTTCCAGAGGACCCGATTTGCTCCTCAAGGCGACCGACGAAGTTTTCAGCAAAAAAAACAATGATACGACTTTGAAAAATCAATTTCAGACATCAAGCGACGGAGGGTCAACTTCTATAACAAAATCTGTTGAAGATACTGGTTCGAAAGATAAAAGTAGTCAATCTCTAGTTAGAACCCATCATGTTCTCAAAATAAAACTCAAAAAAGTTAGTTAATTATTCAGTGAAATAGTACTGAACAGTATAAAAAGTTCAGATAACGAATTGGAGCGGTTGCAGTGGAGCAGCCTTGGATGATGAGCCATTCTATCACGGTTACATGTCTCGTGAAGAAGCAGAAAAATTGGTTCGTACACAGGGAGAATTTCTTCTTCGTAAGACAGAATCAACGAAGAGAGGAGAAGTCGTTGTACTCTCCGTATTCTGGGATGACACTGCCAATCATCTAGTCGTTGAAAAAGCCAACAATGGCTCCTCGTATTATCTGAAAGAGTTCTGCTTTGAGAATATCAGTGACCTAGTCCGTTATCATCATCAGACACGCGCCTCCGTCTATAAATCGGGAATCAAATTGTTCAGTTGGGTGATTAGAGAGGAATGGCAATTGTATCATGAACAGGTTACTGTAGTTTTGTTTTGAAAAATATATTACTTTAAAGTGCAGATAAATTTGGGAAAGAAATTGGGTAACGGAGAATTCGGAGAAGTTTTTCAAGGCATGTTGTCAGTGGGGAT</canonical>
            <polymorphic>TTTCATTAACTACCATGTTTTACTACATTCAGTGTTGTTTTTGTTACCGATTTGTTGTTATCCAGTTTTTATTTCCCTTTCATATTTACCACGTTCCTCTTTTTTTTCTAATTTGTTCAGTATTTCAATTTTCATATAAACGCACTTTCAAATTTAACGACTATGCTGGTACATACTTTTTCAGTCATCAGAGAAACTTTTTTCAATTCAGAGTGTTAGCAGAGGACCCAGAAGACACGAATATCGATCAGAAGTTGAAACTATTTCCAGAGGACCCGATTTGCTCCTCAAGGCGACCGACGAAGTTTTCAGCAAAAAAAACAATGATACGACTTTGAAAAATCAATTTCAGACATCAAGCGACGGAGGGTCAACTTCTATAACAAAATCTGTTGAAGATACTGGTTCGAAAGATAAAAGTAGTCAATCTCTAGTTAGAACCCATCATGTTCTCAAAATAAAACTCAAAAAAGTTAGTTAATTATTCAGTGAAATAGTAYTGAACAGTATAAAAAGTTCAGATAACGAATTGGAGCGGTTGCAGTGGAGCAGCCTTGGATGATGAGCCATTCTATCACGGTTACATGTCTCGTGAAGAAGCAGAAAAATTGGTTCGTACACAGGGAGAATTTCTTCTTCGTAAGACAGAATCAACGAAGAGAGGAGAAGTCGTTGTACTCTCCGTATTCTGGGATGACACTGCCAATCATCTAGTCGTTGAAAAAGCCAACAATGGCTCCTCGTATTATCTGAAAGAGTTCTGCTTTGAGAATATCAGTGACCTAGTCCGTTATCATCATCAGACACGCGCCTCCGTCTATAAATCGGGAATCAAATTGTTCAGTTGGGTGATTAGAGAGGAATGGCAATTGTATCATGAACAGGTTACTGTAGTTTTGTTTTGAAAAATATATTACTTTAAAGTGCAGATAAATTTGGGAAAGAAATTGGGTAACGGAGAATTCGGAGAAGTTTTTCAAGGCATGTTGTCAGTGGGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGTACT</site>
                <isoschizomers>
                    <enzyme>Acc113I</enzyme>
                    <enzyme>ScaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>328 324 170 119 59</canonical_bands>
                <polymorphic_bands>447 324 170 59</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>496 326 178</canonical_bands>
                <polymorphic_bands>674 326</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTAGTTAGAACCCATCATGTTC</pcr_primer_p1>
		<pcr_primer_p2>AGTACAACGACTTCTCCTCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTAGTTAGAACCCATCATGTTCTCAAAATAAAACTCAAAAAAGTTAGTTAATTATTCAGTGAAATAGTACTGAACAGTATAAAAAGTTCAGATAACGAATTGGAGCGGTTGCAGTGGAGCAGCCTTGGATGATGAGCCATTCTATCACGGTTACATGTCTCGTGAAGAAGCAGAAAAATTGGTTCGTACACAGGGAGAATTTCTTCTTCGTAAGACAGAATCAACGAAGAGAGGAGAAGTCGTTGTACT</canonical_amplicon>
		<polymorphic_amplicon>TCTAGTTAGAACCCATCATGTTCTCAAAATAAAACTCAAAAAAGTTAGTTAATTATTCAGTGAAATAGTAYTGAACAGTATAAAAAGTTCAGATAACGAATTGGAGCGGTTGCAGTGGAGCAGCCTTGGATGATGAGCCATTCTATCACGGTTACATGTCTCGTGAAGAAGCAGAAAAATTGGTTCGTACACAGGGAGAATTTCTTCTTCGTAAGACAGAATCAACGAAGAGAGGAGAAGTCGTTGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16147</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>338960</contig_pos>
        <strand>+</strand>
        <context>TGGATGACTC[C/T]TTGATTTAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGTCTTCTGGAGGGCACGTCCCCAGAGGCAGTTTCTTGATGGATGACTC</left_flank>
        <right_flank>TTGATTTAGGTGCTTCAACTTGTCGTTCTGTTTATCTTTGCTTTGAGTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCGGGAATTCAATTTGTTTCTTTTCCTCTTTTGTTGATTTGAAACCAACCAAAATCGGGATGTCTCTCCTTCTTTTGATATGATTATGATGATATCGGATAGAAAGAGAATGGATCATTACAGAAAAAGAGAAACTAGAGAAGAAATAGGGGCGGAGCTTAGGAAGAAAGACAAAGAAGAAGAAGACGTCGACGTTGGTTCGGTTTCTCTTTTTCTCTCTTCTCCTGACCCCAACATCAAGAAGCGTGTGCTGTCCAAGAGAAAAACTGTGGGAGAGGAAGAAAAAGAATCAAAAAAAATGCCACCCAATTCGGCACTTTTTCTATTAGCAGTAATACTTTTTGTGTCTCCAATTGATTCCAGAGGATTCTTTGGTATTCCAGGTAAGTTTCTTTTCTAGATCTCTTTCTTTCTTTCGTTTCGAATGGAAAGCCAAAGAAACGGGGACGTCTTCTGGAGGGCACGTCCCCAGAGGCAGTTTCTTGATGGATGACTCTTTGATTTAGGTGCTTCAACTTGTCGTTCTGTTTATCTTTGCTTTGAGTTTTTGGAAGAAGAGTGGGCCTAGATCAAAACAAAAAAGTAAACAAAAAAGATGCTAAACTATGATAGCATGTCAAAAATTTCAAGAAAAGATACGTTGTATAATTTTTTAGCAAAATTTGAATTCCCAAAATTATAAGAACATACAGATTGTACAGGGTGGCTCACAATTACCTGGACTGATAAACACAGGTATATCTTTAGACATAAGTATCTTGGAGGCACGAAAATCGGTAGAAATATAATTTTACATTTGATTCAAAGCTAATAAAATTTTCACAGCGATTCCTCAATTCTAGATATCATTCTTAGATAAATAAATGAAGTTGCCTCTCTTTCTCGATCTGTCCGAACACGTTGAAAAAGTTGAAATAAAATATAAATTTACGTGACCCTTTGAGTAAGACAGAGGAGCGAAGCGACGAACAGTGAAAAATATAGATTGAATCGCGCC</canonical>
            <polymorphic>ATTTCGGGAATTCAATTTGTTTCTTTTCCTCTTTTGTTGATTTGAAACCAACCAAAATCGGGATGTCTCTCCTTCTTTTGATATGATTATGATGATATCGGATAGAAAGAGAATGGATCATTACAGAAAAAGAGAAACTAGAGAAGAAATAGGGGCGGAGCTTAGGAAGAAAGACAAAGAAGAAGAAGACGTCGACGTTGGTTCGGTTTCTCTTTTTCTCTCTTCTCCTGACCCCAACATCAAGAAGCGTGTGCTGTCCAAGAGAAAAACTGTGGGAGAGGAAGAAAAAGAATCAAAAAAAATGCCACCCAATTCGGCACTTTTTCTATTAGCAGTAATACTTTTTGTGTCTCCAATTGATTCCAGAGGATTCTTTGGTATTCCAGGTAAGTTTCTTTTCTAGATCTCTTTCTTTCTTTCGTTTCGAATGGAAAGCCAAAGAAACGGGGACGTCTTCTGGAGGGCACGTCCCCAGAGGCAGTTTCTTGATGGATGACTCYTTGATTTAGGTGCTTCAACTTGTCGTTCTGTTTATCTTTGCTTTGAGTTTTTGGAAGAAGAGTGGGCCTAGATCAAAACAAAAAAGTAAACAAAAAAGATGCTAAACTATGATAGCATGTCAAAAATTTCAAGAAAAGATACGTTGTATAATTTTTTAGCAAAATTTGAATTCCCAAAATTATAAGAACATACAGATTGTACAGGGTGGCTCACAATTACCTGGACTGATAAACACAGGTATATCTTTAGACATAAGTATCTTGGAGGCACGAAAATCGGTAGAAATATAATTTTACATTTGATTCAAAGCTAATAAAATTTTCACAGCGATTCCTCAATTCTAGATATCATTCTTAGATAAATAAATGAAGTTGCCTCTCTTTCTCGATCTGTCCGAACACGTTGAAAAAGTTGAAATAAAATATAAATTTACGTGACCCTTTGAGTAAGACAGAGGAGCGAAGCGACGAACAGTGAAAAATATAGATTGAATCGCGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTTGGTATTCCAGGTAAGT</pcr_primer_p1>
		<pcr_primer_p2>CATGCTATCATAGTTTAGCATCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTTGGTATTCCAGGTAAGTTTCTTTTCTAGATCTCTTTCTTTCTTTCGTTTCGAATGGAAAGCCAAAGAAACGGGGACGTCTTCTGGAGGGCACGTCCCCAGAGGCAGTTTCTTGATGGATGACTCTTTGATTTAGGTGCTTCAACTTGTCGTTCTGTTTATCTTTGCTTTGAGTTTTTGGAAGAAGAGTGGGCCTAGATCAAAACAAAAAAGTAAACAAAAAAGATGCTAAACTATGATAGCATG</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTTGGTATTCCAGGTAAGTTTCTTTTCTAGATCTCTTTCTTTCTTTCGTTTCGAATGGAAAGCCAAAGAAACGGGGACGTCTTCTGGAGGGCACGTCCCCAGAGGCAGTTTCTTGATGGATGACTCYTTGATTTAGGTGCTTCAACTTGTCGTTCTGTTTATCTTTGCTTTGAGTTTTTGGAAGAAGAGTGGGCCTAGATCAAAACAAAAAAGTAAACAAAAAAGATGCTAAACTATGATAGCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16148</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>338908</contig_pos>
        <strand></strand>
        <context>AAAGAAACGG[G/A]GRCGTCTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTCTAGATCTCTTTCTTTCTTTCGTTTCGAATGGAAAGCCAAAGAAACGG</left_flank>
        <right_flank>GACGTCTTCTGGAGGGCACGTCCCCAGAGGCAGTTTCTTGATGGATGACT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCGAGCGGAAATATTGGTATATATGTGTTAAAAGAGAAGAAATCGAAGGGGATTTCGGGAATTCAATTTGTTTCTTTTCCTCTTTTGTTGATTTGAAACCAACCAAAATCGGGATGTCTCTCCTTCTTTTGATATGATTATGATGATATCGGATAGAAAGAGAATGGATCATTACAGAAAAAGAGAAACTAGAGAAGAAATAGGGGCGGAGCTTAGGAAGAAAGACAAAGAAGAAGAAGACGTCGACGTTGGTTCGGTTTCTCTTTTTCTCTCTTCTCCTGACCCCAACATCAAGAAGCGTGTGCTGTCCAAGAGAAAAACTGTGGGAGAGGAAGAAAAAGAATCAAAAAAAATGCCACCCAATTCGGCACTTTTTCTATTAGCAGTAATACTTTTTGTGTCTCCAATTGATTCCAGAGGATTCTTTGGTATTCCAGGTAAGTTTCTTTTCTAGATCTCTTTCTTTCTTTCGTTTCGAATGGAAAGCCAAAGAAACGGGGACGTCTTCTGGAGGGCACGTCCCCAGAGGCAGTTTCTTGATGGATGACTCTTTGATTTAGGTGCTTCAACTTGTCGTTCTGTTTATCTTTGCTTTGAGTTTTTGGAAGAAGAGTGGGCCTAGATCAAAACAAAAAAGTAAACAAAAAAGATGCTAAACTATGATAGCATGTCAAAAATTTCAAGAAAAGATACGTTGTATAATTTTTTAGCAAAATTTGAATTCCCAAAATTATAAGAACATACAGATTGTACAGGGTGGCTCACAATTACCTGGACTGATAAACACAGGTATATCTTTAGACATAAGTATCTTGGAGGCACGAAAATCGGTAGAAATATAATTTTACATTTGATTCAAAGCTAATAAAATTTTCACAGCGATTCCTCAATTCTAGATATCATTCTTAGATAAATAAATGAAGTTGCCTCTCTTTCTCGATCTGTCCGAACACGTTGAAAAAGTTGAAATAAAATATAAATTTACGTGACCCTTTGAGT</canonical>
            <polymorphic>GCCGAGCGGAAATATTGGTATATATGTGTTAAAAGAGAAGAAATCGAAGGGGATTTCGGGAATTCAATTTGTTTCTTTTCCTCTTTTGTTGATTTGAAACCAACCAAAATCGGGATGTCTCTCCTTCTTTTGATATGATTATGATGATATCGGATAGAAAGAGAATGGATCATTACAGAAAAAGAGAAACTAGAGAAGAAATAGGGGCGGAGCTTAGGAAGAAAGACAAAGAAGAAGAAGACGTCGACGTTGGTTCGGTTTCTCTTTTTCTCTCTTCTCCTGACCCCAACATCAAGAAGCGTGTGCTGTCCAAGAGAAAAACTGTGGGAGAGGAAGAAAAAGAATCAAAAAAAATGCCACCCAATTCGGCACTTTTTCTATTAGCAGTAATACTTTTTGTGTCTCCAATTGATTCCAGAGGATTCTTTGGTATTCCAGGTAAGTTTCTTTTCTAGATCTCTTTCTTTCTTTCGTTTCGAATGGAAAGCCAAAGAAACGGRGACGTCTTCTGGAGGGCACGTCCCCAGAGGCAGTTTCTTGATGGATGACTCTTTGATTTAGGTGCTTCAACTTGTCGTTCTGTTTATCTTTGCTTTGAGTTTTTGGAAGAAGAGTGGGCCTAGATCAAAACAAAAAAGTAAACAAAAAAGATGCTAAACTATGATAGCATGTCAAAAATTTCAAGAAAAGATACGTTGTATAATTTTTTAGCAAAATTTGAATTCCCAAAATTATAAGAACATACAGATTGTACAGGGTGGCTCACAATTACCTGGACTGATAAACACAGGTATATCTTTAGACATAAGTATCTTGGAGGCACGAAAATCGGTAGAAATATAATTTTACATTTGATTCAAAGCTAATAAAATTTTCACAGCGATTCCTCAATTCTAGATATCATTCTTAGATAAATAAATGAAGTTGCCTCTCTTTCTCGATCTGTCCGAACACGTTGAAAAAGTTGAAATAAAATATAAATTTACGTGACCCTTTGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTTGGTATTCCAGGTAAGT</pcr_primer_p1>
		<pcr_primer_p2>CATGCTATCATAGTTTAGCATCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTTGGTATTCCAGGTAAGTTTCTTTTCTAGATCTCTTTCTTTCTTTCGTTTCGAATGGAAAGCCAAAGAAACGGGGACGTCTTCTGGAGGGCACGTCCCCAGAGGCAGTTTCTTGATGGATGACTCTTTGATTTAGGTGCTTCAACTTGTCGTTCTGTTTATCTTTGCTTTGAGTTTTTGGAAGAAGAGTGGGCCTAGATCAAAACAAAAAAGTAAACAAAAAAGATGCTAAACTATGATAGCATG</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTTGGTATTCCAGGTAAGTTTCTTTTCTAGATCTCTTTCTTTCTTTCGTTTCGAATGGAAAGCCAAAGAAACGGRGACGTCTTCTGGAGGGCACGTCCCCAGAGGCAGTTTCTTGATGGATGACTCTTTGATTTAGGTGCTTCAACTTGTCGTTCTGTTTATCTTTGCTTTGAGTTTTTGGAAGAAGAGTGGGCCTAGATCAAAACAAAAAAGTAAACAAAAAAGATGCTAAACTATGATAGCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16149</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>387005</contig_pos>
        <strand>+</strand>
        <context>TCGGTTCGCT[A/T]CATTCTTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCTCAAGGTTCTTCTATGGAGGTAAGTTTCTCTCTCTTCTCGGTTCGCT</left_flank>
        <right_flank>CATTCTTGAAAATTAATTTCAGATCAGTTTGACAGTTTCGATAAGCACTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTATTTGGCATGATCGAATTAGTTTGCTGTTCCTCATCATATGACCTCTTTTTGTGTCAACAATATCCTCTATTTATGCTGAACAATAAATTTTTTTCAGGTGCGGTTCTCATTCAAAGTCCGTCCGAATGCACAGAACAATCAAGAAATTTGCGAGAAATGGCTGATGGTGAGTTCAATTATCTTTATGAATGAAGAGGAGATGAAGATGCCTATCTAATGGTTTTACAGCATTTTCGTTTTTTTTTTCAAAGTATTTACAAAAGACAAAGGAAGGGAATAATGGTAGAGAATAAAGCGAGACAGTATTCCGGTTAGAGATAAACATCGAAAGCTTCTCGCTCTCATCTCTGCCATCTTTTTCGTGTCATCTTTGTCTTTCTCTTCTTTGGGAATTCATTCAAAAAATGAGATTGTGTTCAGGTGACGCCTACTCACTACCAAATACCTCAAGGTTCTTCTATGGAGGTAAGTTTCTCTCTCTTCTCGGTTCGCTACATTCTTGAAAATTAATTTCAGATCAGTTTGACAGTTTCGATAAGCACTGATATTGTTCGACGAATCCAAGATATTTTACGAAATGGACAACTCCAAGAAATTCTCGTTTTACATCTTGAGAATGGACGCGATTATTTCATACCTGTTACTGCTGTCTACAACAATTCATGCTTTGGAAGTACTTTAGAAAAGCTTTTATCAGCAAGACCCAAGAAAGAAGTTAATTTAATTGATTTTGTAAGTTTCAAGAACCTATTTTTGTAAATTAAAATTTCCAAAAGTTCAGGATGACTTGGAGAGTTCTTTATCGGATAATTGTCCTCCGAATGTTCCTCGTGTCATTTATCGACTGGTGATGGCTCTCAGAGCTCGTGGTGCAGTGCAACTGAATATAGAAGAAGAACAAGATAACGAAGTGTTTAATCGAATTCGCCAAGCTCTTGAAACTGGACACCCTGACGACATGAGTGAGTTTTATTAAAGCGAAAATGAAGTTATA</canonical>
            <polymorphic>TGTTTATTTGGCATGATCGAATTAGTTTGCTGTTCCTCATCATATGACCTCTTTTTGTGTCAACAATATCCTCTATTTATGCTGAACAATAAATTTTTTTCAGGTGCGGTTCTCATTCAAAGTCCGTCCGAATGCACAGAACAATCAAGAAATTTGCGAGAAATGGCTGATGGTGAGTTCAATTATCTTTATGAATGAAGAGGAGATGAAGATGCCTATCTAATGGTTTTACAGCATTTTCGTTTTTTTTTTCAAAGTATTTACAAAAGACAAAGGAAGGGAATAATGGTAGAGAATAAAGCGAGACAGTATTCCGGTTAGAGATAAACATCGAAAGCTTCTCGCTCTCATCTCTGCCATCTTTTTCGTGTCATCTTTGTCTTTCTCTTCTTTGGGAATTCATTCAAAAAATGAGATTGTGTTCAGGTGACGCCTACTCACTACCAAATACCTCAAGGTTCTTCTATGGAGGTAAGTTTCTCTCTCTTCTCGGTTCGCTWCATTCTTGAAAATTAATTTCAGATCAGTTTGACAGTTTCGATAAGCACTGATATTGTTCGACGAATCCAAGATATTTTACGAAATGGACAACTCCAAGAAATTCTCGTTTTACATCTTGAGAATGGACGCGATTATTTCATACCTGTTACTGCTGTCTACAACAATTCATGCTTTGGAAGTACTTTAGAAAAGCTTTTATCAGCAAGACCCAAGAAAGAAGTTAATTTAATTGATTTTGTAAGTTTCAAGAACCTATTTTTGTAAATTAAAATTTCCAAAAGTTCAGGATGACTTGGAGAGTTCTTTATCGGATAATTGTCCTCCGAATGTTCCTCGTGTCATTTATCGACTGGTGATGGCTCTCAGAGCTCGTGGTGCAGTGCAACTGAATATAGAAGAAGAACAAGATAACGAAGTGTTTAATCGAATTCGCCAAGCTCTTGAAACTGGACACCCTGACGACATGAGTGAGTTTTATTAAAGCGAAAATGAAGTTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATTCCGGTTAGAGATAAACATC</pcr_primer_p1>
		<pcr_primer_p2>CAATATCAGTGCTTATCGAAACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTATTCCGGTTAGAGATAAACATCGAAAGCTTCTCGCTCTCATCTCTGCCATCTTTTTCGTGTCATCTTTGTCTTTCTCTTCTTTGGGAATTCATTCAAAAAATGAGATTGTGTTCAGGTGACGCCTACTCACTACCAAATACCTCAAGGTTCTTCTATGGAGGTAAGTTTCTCTCTCTTCTCGGTTCGCTACATTCTTGAAAATTAATTTCAGATCAGTTTGACAGTTTCGATAAGCACTGATATTG</canonical_amplicon>
		<polymorphic_amplicon>GTATTCCGGTTAGAGATAAACATCGAAAGCTTCTCGCTCTCATCTCTGCCATCTTTTTCGTGTCATCTTTGTCTTTCTCTTCTTTGGGAATTCATTCAAAAAATGAGATTGTGTTCAGGTGACGCCTACTCACTACCAAATACCTCAAGGTTCTTCTATGGAGGTAAGTTTCTCTCTCTTCTCGGTTCGCTWCATTCTTGAAAATTAATTTCAGATCAGTTTGACAGTTTCGATAAGCACTGATATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16150</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>387108</contig_pos>
        <strand>+</strand>
        <context>TCCAAGAAAT[C/T]CTCGTTTTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGTTCGACGAATCCAAGATATTTTACGAAATGGACAACTCCAAGAAAT</left_flank>
        <right_flank>CTCGTTTTACATCTTGAGAATGGACGCGATTATTTCATACCTGTTACTGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGCGGTTCTCATTCAAAGTCCGTCCGAATGCACAGAACAATCAAGAAATTTGCGAGAAATGGCTGATGGTGAGTTCAATTATCTTTATGAATGAAGAGGAGATGAAGATGCCTATCTAATGGTTTTACAGCATTTTCGTTTTTTTTTTCAAAGTATTTACAAAAGACAAAGGAAGGGAATAATGGTAGAGAATAAAGCGAGACAGTATTCCGGTTAGAGATAAACATCGAAAGCTTCTCGCTCTCATCTCTGCCATCTTTTTCGTGTCATCTTTGTCTTTCTCTTCTTTGGGAATTCATTCAAAAAATGAGATTGTGTTCAGGTGACGCCTACTCACTACCAAATACCTCAAGGTTCTTCTATGGAGGTAAGTTTCTCTCTCTTCTCGGTTCGCTACATTCTTGAAAATTAATTTCAGATCAGTTTGACAGTTTCGATAAGCACTGATATTGTTCGACGAATCCAAGATATTTTACGAAATGGACAACTCCAAGAAATTCTCGTTTTACATCTTGAGAATGGACGCGATTATTTCATACCTGTTACTGCTGTCTACAACAATTCATGCTTTGGAAGTACTTTAGAAAAGCTTTTATCAGCAAGACCCAAGAAAGAAGTTAATTTAATTGATTTTGTAAGTTTCAAGAACCTATTTTTGTAAATTAAAATTTCCAAAAGTTCAGGATGACTTGGAGAGTTCTTTATCGGATAATTGTCCTCCGAATGTTCCTCGTGTCATTTATCGACTGGTGATGGCTCTCAGAGCTCGTGGTGCAGTGCAACTGAATATAGAAGAAGAACAAGATAACGAAGTGTTTAATCGAATTCGCCAAGCTCTTGAAACTGGACACCCTGACGACATGAGTGAGTTTTATTAAAGCGAAAATGAAGTTATATTTTGTTTTTCAGGTCAAATAGCATCTTCTTATATGTTGTACAGTGCATTAATACGACTTCTCGATTCTCTAGATGAGCCAATTATTTTAGAAGGAATGTTCA</canonical>
            <polymorphic>GTGCGGTTCTCATTCAAAGTCCGTCCGAATGCACAGAACAATCAAGAAATTTGCGAGAAATGGCTGATGGTGAGTTCAATTATCTTTATGAATGAAGAGGAGATGAAGATGCCTATCTAATGGTTTTACAGCATTTTCGTTTTTTTTTTCAAAGTATTTACAAAAGACAAAGGAAGGGAATAATGGTAGAGAATAAAGCGAGACAGTATTCCGGTTAGAGATAAACATCGAAAGCTTCTCGCTCTCATCTCTGCCATCTTTTTCGTGTCATCTTTGTCTTTCTCTTCTTTGGGAATTCATTCAAAAAATGAGATTGTGTTCAGGTGACGCCTACTCACTACCAAATACCTCAAGGTTCTTCTATGGAGGTAAGTTTCTCTCTCTTCTCGGTTCGCTACATTCTTGAAAATTAATTTCAGATCAGTTTGACAGTTTCGATAAGCACTGATATTGTTCGACGAATCCAAGATATTTTACGAAATGGACAACTCCAAGAAATYCTCGTTTTACATCTTGAGAATGGACGCGATTATTTCATACCTGTTACTGCTGTCTACAACAATTCATGCTTTGGAAGTACTTTAGAAAAGCTTTTATCAGCAAGACCCAAGAAAGAAGTTAATTTAATTGATTTTGTAAGTTTCAAGAACCTATTTTTGTAAATTAAAATTTCCAAAAGTTCAGGATGACTTGGAGAGTTCTTTATCGGATAATTGTCCTCCGAATGTTCCTCGTGTCATTTATCGACTGGTGATGGCTCTCAGAGCTCGTGGTGCAGTGCAACTGAATATAGAAGAAGAACAAGATAACGAAGTGTTTAATCGAATTCGCCAAGCTCTTGAAACTGGACACCCTGACGACATGAGTGAGTTTTATTAAAGCGAAAATGAAGTTATATTTTGTTTTTCAGGTCAAATAGCATCTTCTTATATGTTGTACAGTGCATTAATACGACTTCTCGATTCTCTAGATGAGCCAATTATTTTAGAAGGAATGTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>246 203 176 171 157 47</canonical_bands>
                <polymorphic_bands>374 246 176 157 47</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>216 153 114 113 85 64 60 47 44 36 30 23 6 5 4</canonical_bands>
                <polymorphic_bands>216 153 149 114 113 60 47 44 36 30 23 6 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGAGATTGTGTTCAGGT</pcr_primer_p1>
		<pcr_primer_p2>GACAGCAGTAACAGGTATGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGAGATTGTGTTCAGGTGACGCCTACTCACTACCAAATACCTCAAGGTTCTTCTATGGAGGTAAGTTTCTCTCTCTTCTCGGTTCGCTACATTCTTGAAAATTAATTTCAGATCAGTTTGACAGTTTCGATAAGCACTGATATTGTTCGACGAATCCAAGATATTTTACGAAATGGACAACTCCAAGAAATTCTCGTTTTACATCTTGAGAATGGACGCGATTATTTCATACCTGTTACTGCTGTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGAGATTGTGTTCAGGTGACGCCTACTCACTACCAAATACCTCAAGGTTCTTCTATGGAGGTAAGTTTCTCTCTCTTCTCGGTTCGCTACATTCTTGAAAATTAATTTCAGATCAGTTTGACAGTTTCGATAAGCACTGATATTGTTCGACGAATCCAAGATATTTTACGAAATGGACAACTCCAAGAAATYCTCGTTTTACATCTTGAGAATGGACGCGATTATTTCATACCTGTTACTGCTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16151</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>387346</contig_pos>
        <strand>+</strand>
        <context>TTCCTCGTGT[C/G]ATTTATCGAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GACTTGGAGAGTTCTTTATCGGATAATTGTCCTCCGAATGTTCCTCGTGT</left_flank>
        <right_flank>ATTTATCGACTGGTGATGGCTCTCAGAGCTCGTGGTGCAGTGCAACTGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGCTCTCATCTCTGCCATCTTTTTCGTGTCATCTTTGTCTTTCTCTTCTTTGGGAATTCATTCAAAAAATGAGATTGTGTTCAGGTGACGCCTACTCACTACCAAATACCTCAAGGTTCTTCTATGGAGGTAAGTTTCTCTCTCTTCTCGGTTCGCTACATTCTTGAAAATTAATTTCAGATCAGTTTGACAGTTTCGATAAGCACTGATATTGTTCGACGAATCCAAGATATTTTACGAAATGGACAACTCCAAGAAATTCTCGTTTTACATCTTGAGAATGGACGCGATTATTTCATACCTGTTACTGCTGTCTACAACAATTCATGCTTTGGAAGTACTTTAGAAAAGCTTTTATCAGCAAGACCCAAGAAAGAAGTTAATTTAATTGATTTTGTAAGTTTCAAGAACCTATTTTTGTAAATTAAAATTTCCAAAAGTTCAGGATGACTTGGAGAGTTCTTTATCGGATAATTGTCCTCCGAATGTTCCTCGTGTCATTTATCGACTGGTGATGGCTCTCAGAGCTCGTGGTGCAGTGCAACTGAATATAGAAGAAGAACAAGATAACGAAGTGTTTAATCGAATTCGCCAAGCTCTTGAAACTGGACACCCTGACGACATGAGTGAGTTTTATTAAAGCGAAAATGAAGTTATATTTTGTTTTTCAGGTCAAATAGCATCTTCTTATATGTTGTACAGTGCATTAATACGACTTCTCGATTCTCTAGATGAGCCAATTATTTTAGAAGGAATGTTCAAGATAATACACAAAGAGATGATACGATACAGAACGGATGCTAGGCAGTGAGTCCGATATTTCAGTATACGGGTAACAGAAATACTTTTCAGACTGTGGACTGTGGTTCGATCAAGTCTTCCGAAGCCAAATCAAGCAGTTTTAGAACTTATTTGTCTTATGCTCCGCGAGTTTTTCAGCCAGAAATACGAACTCAGAGGTATCCTAACAAACAGAACTTTTTAATCCAATAAAATATC</canonical>
            <polymorphic>TCGCTCTCATCTCTGCCATCTTTTTCGTGTCATCTTTGTCTTTCTCTTCTTTGGGAATTCATTCAAAAAATGAGATTGTGTTCAGGTGACGCCTACTCACTACCAAATACCTCAAGGTTCTTCTATGGAGGTAAGTTTCTCTCTCTTCTCGGTTCGCTACATTCTTGAAAATTAATTTCAGATCAGTTTGACAGTTTCGATAAGCACTGATATTGTTCGACGAATCCAAGATATTTTACGAAATGGACAACTCCAAGAAATTCTCGTTTTACATCTTGAGAATGGACGCGATTATTTCATACCTGTTACTGCTGTCTACAACAATTCATGCTTTGGAAGTACTTTAGAAAAGCTTTTATCAGCAAGACCCAAGAAAGAAGTTAATTTAATTGATTTTGTAAGTTTCAAGAACCTATTTTTGTAAATTAAAATTTCCAAAAGTTCAGGATGACTTGGAGAGTTCTTTATCGGATAATTGTCCTCCGAATGTTCCTCGTGTSATTTATCGACTGGTGATGGCTCTCAGAGCTCGTGGTGCAGTGCAACTGAATATAGAAGAAGAACAAGATAACGAAGTGTTTAATCGAATTCGCCAAGCTCTTGAAACTGGACACCCTGACGACATGAGTGAGTTTTATTAAAGCGAAAATGAAGTTATATTTTGTTTTTCAGGTCAAATAGCATCTTCTTATATGTTGTACAGTGCATTAATACGACTTCTCGATTCTCTAGATGAGCCAATTATTTTAGAAGGAATGTTCAAGATAATACACAAAGAGATGATACGATACAGAACGGATGCTAGGCAGTGAGTCCGATATTTCAGTATACGGGTAACAGAAATACTTTTCAGACTGTGGACTGTGGTTCGATCAAGTCTTCCGAAGCCAAATCAAGCAGTTTTAGAACTTATTTGTCTTATGCTCCGCGAGTTTTTCAGCCAGAAATACGAACTCAGAGGTATCCTAACAAACAGAACTTTTTAATCCAATAAAATATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATGACTTGGAGAGTTCTTTAT</pcr_primer_p1>
		<pcr_primer_p2>ATAAGAAGATGCTATTTGACCTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGATGACTTGGAGAGTTCTTTATCGGATAATTGTCCTCCGAATGTTCCTCGTGTCATTTATCGACTGGTGATGGCTCTCAGAGCTCGTGGTGCAGTGCAACTGAATATAGAAGAAGAACAAGATAACGAAGTGTTTAATCGAATTCGCCAAGCTCTTGAAACTGGACACCCTGACGACATGAGTGAGTTTTATTAAAGCGAAAATGAAGTTATATTTTGTTTTTCAGGTCAAATAGCATCTTCTTAT</canonical_amplicon>
		<polymorphic_amplicon>GGATGACTTGGAGAGTTCTTTATCGGATAATTGTCCTCCGAATGTTCCTCGTGTSATTTATCGACTGGTGATGGCTCTCAGAGCTCGTGGTGCAGTGCAACTGAATATAGAAGAAGAACAAGATAACGAAGTGTTTAATCGAATTCGCCAAGCTCTTGAAACTGGACACCCTGACGACATGAGTGAGTTTTATTAAAGCGAAAATGAAGTTATATTTTGTTTTTCAGGTCAAATAGCATCTTCTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16152</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>389421</contig_pos>
        <strand>+</strand>
        <context>CCAGCAAATA[A/G]TGAATCAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTTAAGGAAGAAGAAGTTAAGCAAGAGTCTGAACAAGTTCCAGCAAATA</left_flank>
        <right_flank>TGAATCAGAAGAAGACGAGGAGGTGAAAGAGACTGTTCTCGAGCAACCAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGCCATGGCAAGGACTCCCGGACGAAGTTTCAGCAAAGAAGCAGATGATGTCATTGTCAACGGATACCAGAAACTTTCTTCGTGATTCTGCAGCCAATAGTGAATACAGTTTTGAGCAACAACAAGCAATGGCTGCTCTACTTCTCAGAGAAGACCCAAATTTAGCTAACGTTCGATTCCAATTAGTCCCAAAACAGTGAGCATCCGTTTTCAAGGAAAGTACAGTAGCCTGATTTCAGAGTCAAAGAAAACCAATTCTGGCAGAACTATTTCTATCGCATCGGACTTATTCGTCAATCTATGCTTAACCAGGGAACAGGAAGAATTAGTCCAGTTGTGGCTGCACCTGCAACGTCTACAGAAGAAAAGAAGGTTGAAGAGCAAAAGATAGAAGCTGCCCCGGAAGTTTCTGACACGCAGGAGGCGAAGGTTGAAGAACCAGAAGTCGTTAAGGAAGAAGAAGTTAAGCAAGAGTCTGAACAAGTTCCAGCAAATAATGAATCAGAAGAAGACGAGGAGGTGAAAGAGACTGTTCTCGAGCAACCAGCAGCTCCTGGAGAGCAGACATTAACTAGTGTCGGTGAGTCATATAAGACAGTCCGGCGGTCCAGTGGAGCTTGTATGTGCAGTGCCACGTCAGCTACTCACCGAAGCCACAACCACATAAAATCTTGAATGAATTTTCAGACGAAGAATGGGAACGAGAAATTCTCGCGGATCTCAATGACTACGAAGATGTCGTCGAAAAAACTGGAGGAAAAGACGAGGAAGCATGGGAGGCTGAGATTCAGGAACTCCTCAATGCTGAATAATTTTTCTTTTTATTCTCCTTATTTCACTTTCCCCCCAACAAATGTTTCGTGTAAAATTGTATATAACATCACCCCGTTTATGCTCTCCTGTCCCGATTTTTATCTGTATTGTGAATGAATCCGTCGTGATATAAAATACGGACTTTCCGTTGATTTCACCAATATTGTTAATCGTTGATTTCGAA</canonical>
            <polymorphic>ATTTGCCATGGCAAGGACTCCCGGACGAAGTTTCAGCAAAGAAGCAGATGATGTCATTGTCAACGGATACCAGAAACTTTCTTCGTGATTCTGCAGCCAATAGTGAATACAGTTTTGAGCAACAACAAGCAATGGCTGCTCTACTTCTCAGAGAAGACCCAAATTTAGCTAACGTTCGATTCCAATTAGTCCCAAAACAGTGAGCATCCGTTTTCAAGGAAAGTACAGTAGCCTGATTTCAGAGTCAAAGAAAACCAATTCTGGCAGAACTATTTCTATCGCATCGGACTTATTCGTCAATCTATGCTTAACCAGGGAACAGGAAGAATTAGTCCAGTTGTGGCTGCACCTGCAACGTCTACAGAAGAAAAGAAGGTTGAAGAGCAAAAGATAGAAGCTGCCCCGGAAGTTTCTGACACGCAGGAGGCGAAGGTTGAAGAACCAGAAGTCGTTAAGGAAGAAGAAGTTAAGCAAGAGTCTGAACAAGTTCCAGCAAATARTGAATCAGAAGAAGACGAGGAGGTGAAAGAGACTGTTCTCGAGCAACCAGCAGCTCCTGGAGAGCAGACATTAACTAGTGTCGGTGAGTCATATAAGACAGTCCGGCGGTCCAGTGGAGCTTGTATGTGCAGTGCCACGTCAGCTACTCACCGAAGCCACAACCACATAAAATCTTGAATGAATTTTCAGACGAAGAATGGGAACGAGAAATTCTCGCGGATCTCAATGACTACGAAGATGTCGTCGAAAAAACTGGAGGAAAAGACGAGGAAGCATGGGAGGCTGAGATTCAGGAACTCCTCAATGCTGAATAATTTTTCTTTTTATTCTCCTTATTTCACTTTCCCCCCAACAAATGTTTCGTGTAAAATTGTATATAACATCACCCCGTTTATGCTCTCCTGTCCCGATTTTTATCTGTATTGTGAATGAATCCGTCGTGATATAAAATACGGACTTTCCGTTGATTTCACCAATATTGTTAATCGTTGATTTCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACGTCTACAGAAGAAAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>GTCTTATATGACTCACCGACACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAACGTCTACAGAAGAAAAGAAGGTTGAAGAGCAAAAGATAGAAGCTGCCCCGGAAGTTTCTGACACGCAGGAGGCGAAGGTTGAAGAACCAGAAGTCGTTAAGGAAGAAGAAGTTAAGCAAGAGTCTGAACAAGTTCCAGCAAATAATGAATCAGAAGAAGACGAGGAGGTGAAAGAGACTGTTCTCGAGCAACCAGCAGCTCCTGGAGAGCAGACATTAACTAGTGTCGGTGAGTCATATAAGAC</canonical_amplicon>
		<polymorphic_amplicon>CAACGTCTACAGAAGAAAAGAAGGTTGAAGAGCAAAAGATAGAAGCTGCCCCGGAAGTTTCTGACACGCAGGAGGCGAAGGTTGAAGAACCAGAAGTCGTTAAGGAAGAAGAAGTTAAGCAAGAGTCTGAACAAGTTCCAGCAAATARTGAATCAGAAGAAGACGAGGAGGTGAAAGAGACTGTTCTCGAGCAACCAGCAGCTCCTGGAGAGCAGACATTAACTAGTGTCGGTGAGTCATATAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16153</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>389407</contig_pos>
        <strand>+</strand>
        <context>AGTCTGAACA[A/G]GTTCCAGCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGAACCAGAAGTCGTTAAGGAAGAAGAAGTTAAGCAAGAGTCTGAACA</left_flank>
        <right_flank>GTTCCAGCAAATAATGAATCAGAAGAAGACGAGGAGGTGAAAGAGACTGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCAAAAACATTGATTTGCCATGGCAAGGACTCCCGGACGAAGTTTCAGCAAAGAAGCAGATGATGTCATTGTCAACGGATACCAGAAACTTTCTTCGTGATTCTGCAGCCAATAGTGAATACAGTTTTGAGCAACAACAAGCAATGGCTGCTCTACTTCTCAGAGAAGACCCAAATTTAGCTAACGTTCGATTCCAATTAGTCCCAAAACAGTGAGCATCCGTTTTCAAGGAAAGTACAGTAGCCTGATTTCAGAGTCAAAGAAAACCAATTCTGGCAGAACTATTTCTATCGCATCGGACTTATTCGTCAATCTATGCTTAACCAGGGAACAGGAAGAATTAGTCCAGTTGTGGCTGCACCTGCAACGTCTACAGAAGAAAAGAAGGTTGAAGAGCAAAAGATAGAAGCTGCCCCGGAAGTTTCTGACACGCAGGAGGCGAAGGTTGAAGAACCAGAAGTCGTTAAGGAAGAAGAAGTTAAGCAAGAGTCTGAACAAGTTCCAGCAAATAATGAATCAGAAGAAGACGAGGAGGTGAAAGAGACTGTTCTCGAGCAACCAGCAGCTCCTGGAGAGCAGACATTAACTAGTGTCGGTGAGTCATATAAGACAGTCCGGCGGTCCAGTGGAGCTTGTATGTGCAGTGCCACGTCAGCTACTCACCGAAGCCACAACCACATAAAATCTTGAATGAATTTTCAGACGAAGAATGGGAACGAGAAATTCTCGCGGATCTCAATGACTACGAAGATGTCGTCGAAAAAACTGGAGGAAAAGACGAGGAAGCATGGGAGGCTGAGATTCAGGAACTCCTCAATGCTGAATAATTTTTCTTTTTATTCTCCTTATTTCACTTTCCCCCCAACAAATGTTTCGTGTAAAATTGTATATAACATCACCCCGTTTATGCTCTCCTGTCCCGATTTTTATCTGTATTGTGAATGAATCCGTCGTGATATAAAATACGGACTTTCCGTTGATTTCACCAATATTGTTAA</canonical>
            <polymorphic>ACTCAAAAACATTGATTTGCCATGGCAAGGACTCCCGGACGAAGTTTCAGCAAAGAAGCAGATGATGTCATTGTCAACGGATACCAGAAACTTTCTTCGTGATTCTGCAGCCAATAGTGAATACAGTTTTGAGCAACAACAAGCAATGGCTGCTCTACTTCTCAGAGAAGACCCAAATTTAGCTAACGTTCGATTCCAATTAGTCCCAAAACAGTGAGCATCCGTTTTCAAGGAAAGTACAGTAGCCTGATTTCAGAGTCAAAGAAAACCAATTCTGGCAGAACTATTTCTATCGCATCGGACTTATTCGTCAATCTATGCTTAACCAGGGAACAGGAAGAATTAGTCCAGTTGTGGCTGCACCTGCAACGTCTACAGAAGAAAAGAAGGTTGAAGAGCAAAAGATAGAAGCTGCCCCGGAAGTTTCTGACACGCAGGAGGCGAAGGTTGAAGAACCAGAAGTCGTTAAGGAAGAAGAAGTTAAGCAAGAGTCTGAACARGTTCCAGCAAATAATGAATCAGAAGAAGACGAGGAGGTGAAAGAGACTGTTCTCGAGCAACCAGCAGCTCCTGGAGAGCAGACATTAACTAGTGTCGGTGAGTCATATAAGACAGTCCGGCGGTCCAGTGGAGCTTGTATGTGCAGTGCCACGTCAGCTACTCACCGAAGCCACAACCACATAAAATCTTGAATGAATTTTCAGACGAAGAATGGGAACGAGAAATTCTCGCGGATCTCAATGACTACGAAGATGTCGTCGAAAAAACTGGAGGAAAAGACGAGGAAGCATGGGAGGCTGAGATTCAGGAACTCCTCAATGCTGAATAATTTTTCTTTTTATTCTCCTTATTTCACTTTCCCCCCAACAAATGTTTCGTGTAAAATTGTATATAACATCACCCCGTTTATGCTCTCCTGTCCCGATTTTTATCTGTATTGTGAATGAATCCGTCGTGATATAAAATACGGACTTTCCGTTGATTTCACCAATATTGTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACGTCTACAGAAGAAAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>GTCTTATATGACTCACCGACACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAACGTCTACAGAAGAAAAGAAGGTTGAAGAGCAAAAGATAGAAGCTGCCCCGGAAGTTTCTGACACGCAGGAGGCGAAGGTTGAAGAACCAGAAGTCGTTAAGGAAGAAGAAGTTAAGCAAGAGTCTGAACAAGTTCCAGCAAATAATGAATCAGAAGAAGACGAGGAGGTGAAAGAGACTGTTCTCGAGCAACCAGCAGCTCCTGGAGAGCAGACATTAACTAGTGTCGGTGAGTCATATAAGAC</canonical_amplicon>
		<polymorphic_amplicon>CAACGTCTACAGAAGAAAAGAAGGTTGAAGAGCAAAAGATAGAAGCTGCCCCGGAAGTTTCTGACACGCAGGAGGCGAAGGTTGAAGAACCAGAAGTCGTTAAGGAAGAAGAAGTTAAGCAAGAGTCTGAACARGTTCCAGCAAATAATGAATCAGAAGAAGACGAGGAGGTGAAAGAGACTGTTCTCGAGCAACCAGCAGCTCCTGGAGAGCAGACATTAACTAGTGTCGGTGAGTCATATAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16154</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>410073</contig_pos>
        <strand>+</strand>
        <context>TCATTTCTCT[G/T]CCTAGTTCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCAAGGATTTTCATGATTTTTATTACTAGCTATTTCAATTCATTTCTCT</left_flank>
        <right_flank>CCTAGTTCTTCCCTTTCCTGCATACAACAAATAATAATAATAATTCATAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCAATTCATTTCAACTCAAGTTTTCTGTGCAAATTGAAAATTTTTGAGTATTTTGAAAATTCCCATTTTCATCCAATAAACTTTTTCAGTTATTTGAATGCTGTGGAGTGACGAATTCATCAGATTGGCTCACTTTCACATCAATTCCCGACTCGTGTTGCGTCGAAGAAATGGAGGGATGCGTACGGGAGAATGCTCCACTGTTCGAAGCCGGATGCATTCACAGTGTTGAACGTTAGTCGTTTTTTTTTTTGAAAGAAGAAGAGATCAAAGTGTGCTCTGTTGCACTTTGTCAATAGGGCATGATTAGGTGGGAATTCAAAATTGAATTCTTCGAATTTCAGAATGGACACTCAAAAATGGAGCGATGGTTGGTGGGATCTGCGCAGTGTTGGCCGCCATTCAACTGGTTGGAGTCTGTTTCGCTTGTTGTCTTTCAAAATCAATTCTCAAGGATTTTCATGATTTTTATTACTAGCTATTTCAATTCATTTCTCTGCCTAGTTCTTCCCTTTCCTGCATACAACAAATAATAATAATAATTCATAATTTATTTTTTTACAATGAAAATGGAAATACAGACTTTGAATATAAGTAAAATTCGGTAATTGAATCATATTCAAAGTTCAGAAAAAAAGGACTGGGATGAAAATTGGGTTTACCCTGGTTGGAGAGCTCAAAGTGGAAAAGTGTGTGTACCTTGTGCTGGAGCTTTTGACAACAGAACAGAACGTGAGTAAAAAAGAGATACATAAAAATGGCAGCGACGAGATGAATAATAAGAACTGATCTACAGTAACCTGGACTTGAAATGCCAGTAACTTTTCCTTCTCTTTGCTTCTCGGGGAACATTTTCGTTTCGCTACTACTACACAAAAATATCATTTTTCCCAATCTCTTCGTTTTCCAAGAGTCTCTTCTTATTTTTCGTTTTGTGTTATATGGTGAGCGCATCTTTTTTGGAGCTGTGCTTTTCAGAAATGTGCTCGCGTCGCAACT</canonical>
            <polymorphic>CGCAATTCATTTCAACTCAAGTTTTCTGTGCAAATTGAAAATTTTTGAGTATTTTGAAAATTCCCATTTTCATCCAATAAACTTTTTCAGTTATTTGAATGCTGTGGAGTGACGAATTCATCAGATTGGCTCACTTTCACATCAATTCCCGACTCGTGTTGCGTCGAAGAAATGGAGGGATGCGTACGGGAGAATGCTCCACTGTTCGAAGCCGGATGCATTCACAGTGTTGAACGTTAGTCGTTTTTTTTTTTGAAAGAAGAAGAGATCAAAGTGTGCTCTGTTGCACTTTGTCAATAGGGCATGATTAGGTGGGAATTCAAAATTGAATTCTTCGAATTTCAGAATGGACACTCAAAAATGGAGCGATGGTTGGTGGGATCTGCGCAGTGTTGGCCGCCATTCAACTGGTTGGAGTCTGTTTCGCTTGTTGTCTTTCAAAATCAATTCTCAAGGATTTTCATGATTTTTATTACTAGCTATTTCAATTCATTTCTCTKCCTAGTTCTTCCCTTTCCTGCATACAACAAATAATAATAATAATTCATAATTTATTTTTTTACAATGAAAATGGAAATACAGACTTTGAATATAAGTAAAATTCGGTAATTGAATCATATTCAAAGTTCAGAAAAAAAGGACTGGGATGAAAATTGGGTTTACCCTGGTTGGAGAGCTCAAAGTGGAAAAGTGTGTGTACCTTGTGCTGGAGCTTTTGACAACAGAACAGAACGTGAGTAAAAAAGAGATACATAAAAATGGCAGCGACGAGATGAATAATAAGAACTGATCTACAGTAACCTGGACTTGAAATGCCAGTAACTTTTCCTTCTCTTTGCTTCTCGGGGAACATTTTCGTTTCGCTACTACTACACAAAAATATCATTTTTCCCAATCTCTTCGTTTTCCAAGAGTCTCTTCTTATTTTTCGTTTTGTGTTATATGGTGAGCGCATCTTTTTTGGAGCTGTGCTTTTCAGAAATGTGCTCGCGTCGCAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTTCAGAATGGACACTCA</pcr_primer_p1>
		<pcr_primer_p2>AGTCTGTATTTCCATTTTCATTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAATTTCAGAATGGACACTCAAAAATGGAGCGATGGTTGGTGGGATCTGCGCAGTGTTGGCCGCCATTCAACTGGTTGGAGTCTGTTTCGCTTGTTGTCTTTCAAAATCAATTCTCAAGGATTTTCATGATTTTTATTACTAGCTATTTCAATTCATTTCTCTGCCTAGTTCTTCCCTTTCCTGCATACAACAAATAATAATAATAATTCATAATTTATTTTTTTACAATGAAAATGGAAATACAGACT</canonical_amplicon>
		<polymorphic_amplicon>GAATTTCAGAATGGACACTCAAAAATGGAGCGATGGTTGGTGGGATCTGCGCAGTGTTGGCCGCCATTCAACTGGTTGGAGTCTGTTTCGCTTGTTGTCTTTCAAAATCAATTCTCAAGGATTTTCATGATTTTTATTACTAGCTATTTCAATTCATTTCTCTKCCTAGTTCTTCCCTTTCCTGCATACAACAAATAATAATAATAATTCATAATTTATTTTTTTACAATGAAAATGGAAATACAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16155</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>412567</contig_pos>
        <strand>+</strand>
        <context>TGGGTTTCTC[G/T]AGAACTGTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCGTTCTTCGCTGATAAGCACAATTCCCGACATGGCTGAATGGGTTTCTC</left_flank>
        <right_flank>AGAACTGTACAGACTGGAGCGTATACGGTACACAGGAACAGACGAATATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAAGGTGACAAGTGTGAAAAGTGAGCAGACGAAACAGGCAACAGACCAGGCTGCAGTCCAAATTCGAAGAATACGTCTCACGCGTCCGTCGAACATCATCGGTACCTGATTATCCGCTTCACACGTCAACGAACAATCAGGAAGACGTCCACTCAAAAGAGGGAGTGAAAAGTGAGAACCACTGGTGGTATGCATGACATGTGGGCATATTTTTGGAGATAGAACCACTTCATTAGCAATTGTGGAGACACCGAATGTGACGTCACTGCTGCTCCTGTAATTTGGACTATAAATCCTATAGATTTCATTGAAAAAAGAAACACTTACTTCTTAGAACTACTCGATTCACTAGAATTCTTTCCAACACACAAATCACTAACAGGAAATTTGTTACAGTCTAGCTGATCGGGCCATTGGAAACCAAACTTTTTCATCAGTGACTCGCAACCGTTCTTCGCTGATAAGCACAATTCCCGACATGGCTGAATGGGTTTCTCTAGAACTGTACAGACTGGAGCGTATACGGTACACAGGAACAGACGAATATCTTCAGAACATTTCACTTTGATTAGTGGATTGAACTGTGAAATGGCAGGATTGGCTTCGGACTGAGTTGTATGTCCGAGGAGATTGGGAAAAACTGTTTGGTTATAATCAAGGTTCTTGCACATCGGGATTGAGATTAGCTCGCATTTTCGTGGGCTCGACAATCCGCTCATCGATGAAATCGATGTGGACGATAGTCTTTGATCAGATGAAGAACATCCAAGAAAAATTGTGAAAAATATAAACAGAGGTCGATACATTGTGATTTAATTGGGTTCGATGGTTAGTTCATAGCACAGGTTGTGATTTATCTGAAACATGCGAGAATTTTTGAAGAAAGAAAAAATCAGAAGTAGAAAGTAAAAATTCAAATCAGGGATCTTCGGACTGTCGAAAACTCCGATTCTCAAAATTTCGGGTTTTTAAAAGTAGAATCAGAGAAGCGCGACAAA</canonical>
            <polymorphic>AGGAAGGTGACAAGTGTGAAAAGTGAGCAGACGAAACAGGCAACAGACCAGGCTGCAGTCCAAATTCGAAGAATACGTCTCACGCGTCCGTCGAACATCATCGGTACCTGATTATCCGCTTCACACGTCAACGAACAATCAGGAAGACGTCCACTCAAAAGAGGGAGTGAAAAGTGAGAACCACTGGTGGTATGCATGACATGTGGGCATATTTTTGGAGATAGAACCACTTCATTAGCAATTGTGGAGACACCGAATGTGACGTCACTGCTGCTCCTGTAATTTGGACTATAAATCCTATAGATTTCATTGAAAAAAGAAACACTTACTTCTTAGAACTACTCGATTCACTAGAATTCTTTCCAACACACAAATCACTAACAGGAAATTTGTTACAGTCTAGCTGATCGGGCCATTGGAAACCAAACTTTTTCATCAGTGACTCGCAACCGTTCTTCGCTGATAAGCACAATTCCCGACATGGCTGAATGGGTTTCTCKAGAACTGTACAGACTGGAGCGTATACGGTACACAGGAACAGACGAATATCTTCAGAACATTTCACTTTGATTAGTGGATTGAACTGTGAAATGGCAGGATTGGCTTCGGACTGAGTTGTATGTCCGAGGAGATTGGGAAAAACTGTTTGGTTATAATCAAGGTTCTTGCACATCGGGATTGAGATTAGCTCGCATTTTCGTGGGCTCGACAATCCGCTCATCGATGAAATCGATGTGGACGATAGTCTTTGATCAGATGAAGAACATCCAAGAAAAATTGTGAAAAATATAAACAGAGGTCGATACATTGTGATTTAATTGGGTTCGATGGTTAGTTCATAGCACAGGTTGTGATTTATCTGAAACATGCGAGAATTTTTGAAGAAAGAAAAAATCAGAAGTAGAAAGTAAAAATTCAAATCAGGGATCTTCGGACTGTCGAAAACTCCGATTCTCAAAATTTCGGGTTTTTAAAAGTAGAATCAGAGAAGCGCGACAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 351 99 49</canonical_bands>
                <polymorphic_bands>600 351 49</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCACTAGAATTCTTTCCAACAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTCACAGTTCAATCCACTAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTCACTAGAATTCTTTCCAACACACAAATCACTAACAGGAAATTTGTTACAGTCTAGCTGATCGGGCCATTGGAAACCAAACTTTTTCATCAGTGACTCGCAACCGTTCTTCGCTGATAAGCACAATTCCCGACATGGCTGAATGGGTTTCTCTAGAACTGTACAGACTGGAGCGTATACGGTACACAGGAACAGACGAATATCTTCAGAACATTTCACTTTGATTAGTGGATTGAACTGTGAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTCACTAGAATTCTTTCCAACACACAAATCACTAACAGGAAATTTGTTACAGTCTAGCTGATCGGGCCATTGGAAACCAAACTTTTTCATCAGTGACTCGCAACCGTTCTTCGCTGATAAGCACAATTCCCGACATGGCTGAATGGGTTTCTCKAGAACTGTACAGACTGGAGCGTATACGGTACACAGGAACAGACGAATATCTTCAGAACATTTCACTTTGATTAGTGGATTGAACTGTGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16156</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>426613</contig_pos>
        <strand>+</strand>
        <context>CTTTTACCAG[A/G]CATGAGAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATGTTTCAAGGTGTTAATAGCCTCTACGAAATTCATACTTTTACCAG</left_flank>
        <right_flank>CATGAGAACATAGAAACATGTAATTTCTAACATATGGCCCATGTGATCTA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGAAGATCATAACACGGCCAGGAATATGTTGAGCCCACGTCTTCCAAACATTGTAAGCTCGGGTATCAACATATTTTGCAGCAGTCATGATTGCGACCAGAATCAACCCCCGACGATGACCTGGAAGGCTTTGTGATCTGGTAAAGACGTCCGCGTCGGCTCTCAGACTGATGATATCGAGCTCTTCGGATCGGGAGACTTGTTGTTCTGGTCCGCATATTACCGGATCGGTGAGAGATTTGAGGGTGGTCAAATAGTGAGTGGCTGACAGACCGAAAAGAATGCCCAGTATGATGGTGAAGGTGGACCGTGAGATCGGCATTCTGCAGTTGCTTCGCTGAAACTTTAAAAAAACTAAAAAGAGAGAGACGATTTATAAAGGATCCGGTGAAAGGTAATCTGGTCTTGGAAAATGAGGAAAACTACAGTAATCTACCGATAAGACGACAAAATGTTTCAAGGTGTTAATAGCCTCTACGAAATTCATACTTTTACCAGGCATGAGAACATAGAAACATGTAATTTCTAACATATGGCCCATGTGATCTAGGGCTTTTTGTTTTGTCGATTTATCAAGAAATGACTCACCAGACGCATACTCTCGGTGTCTTGATTACCGGAATCGTTGAGCAAGAGTGTCTGCGCCTCCTCGTCCGTCGCCTTCTCTCCTCCGATCCGATACCGATTGATAGTGACACTCGTTTTGACTCTCGTTTCTTTGATTTTCAATAATATCTAATCGGTTGCTAAGTGTTTTCGTCAGGTGTCTCGATGGTGGTCGCAATGGGATAGTGAACTTCTTCTCGCGGGTTTGATGATGAAGATGATTGAGACTGAGTTGAGCAGGTGGCGACATATAATTGCGCGTCAGATGGCACTATGTTTCATTGATTTGCGTCGCTATTTACACCACCGCTGCTTCTCGTGTTAAAATTTGAGCAGAACGCTGAAACAAGACATCATAAGTTCAAATTTCAGATAATTTCAAAAACATATTTT</canonical>
            <polymorphic>ACGAAGATCATAACACGGCCAGGAATATGTTGAGCCCACGTCTTCCAAACATTGTAAGCTCGGGTATCAACATATTTTGCAGCAGTCATGATTGCGACCAGAATCAACCCCCGACGATGACCTGGAAGGCTTTGTGATCTGGTAAAGACGTCCGCGTCGGCTCTCAGACTGATGATATCGAGCTCTTCGGATCGGGAGACTTGTTGTTCTGGTCCGCATATTACCGGATCGGTGAGAGATTTGAGGGTGGTCAAATAGTGAGTGGCTGACAGACCGAAAAGAATGCCCAGTATGATGGTGAAGGTGGACCGTGAGATCGGCATTCTGCAGTTGCTTCGCTGAAACTTTAAAAAAACTAAAAAGAGAGAGACGATTTATAAAGGATCCGGTGAAAGGTAATCTGGTCTTGGAAAATGAGGAAAACTACAGTAATCTACCGATAAGACGACAAAATGTTTCAAGGTGTTAATAGCCTCTACGAAATTCATACTTTTACCAGRCATGAGAACATAGAAACATGTAATTTCTAACATATGGCCCATGTGATCTAGGGCTTTTTGTTTTGTCGATTTATCAAGAAATGACTCACCAGACGCATACTCTCGGTGTCTTGATTACCGGAATCGTTGAGCAAGAGTGTCTGCGCCTCCTCGTCCGTCGCCTTCTCTCCTCCGATCCGATACCGATTGATAGTGACACTCGTTTTGACTCTCGTTTCTTTGATTTTCAATAATATCTAATCGGTTGCTAAGTGTTTTCGTCAGGTGTCTCGATGGTGGTCGCAATGGGATAGTGAACTTCTTCTCGCGGGTTTGATGATGAAGATGATTGAGACTGAGTTGAGCAGGTGGCGACATATAATTGCGCGTCAGATGGCACTATGTTTCATTGATTTGCGTCGCTATTTACACCACCGCTGCTTCTCGTGTTAAAATTTGAGCAGAACGCTGAAACAAGACATCATAAGTTCAAATTTCAGATAATTTCAAAAACATATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>503 375 102 20</canonical_bands>
                <polymorphic_bands>878 102 20</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>503 375 102 20</canonical_bands>
                <polymorphic_bands>878 102 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAAATGTTTCAAGGTGTTAAT</pcr_primer_p1>
		<pcr_primer_p2>GAGTGTCACTATCAATCGGTATC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ACAAAATGTTTCAAGGTGTTAATAGCCTCTACGAAATTCATACTTTTACCAGGCATGAGAACATAGAAACATGTAATTTCTAACATATGGCCCATGTGATCTAGGGCTTTTTGTTTTGTCGATTTATCAAGAAATGACTCACCAGACGCATACTCTCGGTGTCTTGATTACCGGAATCGTTGAGCAAGAGTGTCTGCGCCTCCTCGTCCGTCGCCTTCTCTCCTCCGATCCGATACCGATTGATAGTGACACTC</canonical_amplicon>
		<polymorphic_amplicon>ACAAAATGTTTCAAGGTGTTAATAGCCTCTACGAAATTCATACTTTTACCAGRCATGAGAACATAGAAACATGTAATTTCTAACATATGGCCCATGTGATCTAGGGCTTTTTGTTTTGTCGATTTATCAAGAAATGACTCACCAGACGCATACTCTCGGTGTCTTGATTACCGGAATCGTTGAGCAAGAGTGTCTGCGCCTCCTCGTCCGTCGCCTTCTCTCCTCCGATCCGATACCGATTGATAGTGACACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16157</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>426691</contig_pos>
        <strand>+</strand>
        <context>GATTTATCAA[A/G]AAATGACTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAACATATGGCCCATGTGATCTAGGGCTTTTTGTTTTGTCGATTTATCAA</left_flank>
        <right_flank>AAATGACTCACCAGACGCATACTCTCGGTGTCTTGATTACCGGAATCGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAGCAGTCATGATTGCGACCAGAATCAACCCCCGACGATGACCTGGAAGGCTTTGTGATCTGGTAAAGACGTCCGCGTCGGCTCTCAGACTGATGATATCGAGCTCTTCGGATCGGGAGACTTGTTGTTCTGGTCCGCATATTACCGGATCGGTGAGAGATTTGAGGGTGGTCAAATAGTGAGTGGCTGACAGACCGAAAAGAATGCCCAGTATGATGGTGAAGGTGGACCGTGAGATCGGCATTCTGCAGTTGCTTCGCTGAAACTTTAAAAAAACTAAAAAGAGAGAGACGATTTATAAAGGATCCGGTGAAAGGTAATCTGGTCTTGGAAAATGAGGAAAACTACAGTAATCTACCGATAAGACGACAAAATGTTTCAAGGTGTTAATAGCCTCTACGAAATTCATACTTTTACCAGGCATGAGAACATAGAAACATGTAATTTCTAACATATGGCCCATGTGATCTAGGGCTTTTTGTTTTGTCGATTTATCAAGAAATGACTCACCAGACGCATACTCTCGGTGTCTTGATTACCGGAATCGTTGAGCAAGAGTGTCTGCGCCTCCTCGTCCGTCGCCTTCTCTCCTCCGATCCGATACCGATTGATAGTGACACTCGTTTTGACTCTCGTTTCTTTGATTTTCAATAATATCTAATCGGTTGCTAAGTGTTTTCGTCAGGTGTCTCGATGGTGGTCGCAATGGGATAGTGAACTTCTTCTCGCGGGTTTGATGATGAAGATGATTGAGACTGAGTTGAGCAGGTGGCGACATATAATTGCGCGTCAGATGGCACTATGTTTCATTGATTTGCGTCGCTATTTACACCACCGCTGCTTCTCGTGTTAAAATTTGAGCAGAACGCTGAAACAAGACATCATAAGTTCAAATTTCAGATAATTTCAAAAACATATTTTTGAGGTAAACGGAAGAGTCCGGGAAAAAAGAGATAGGTGGAAAACTGTAAGGCAGAAAGAAGAAAAGAGAGCAGATAA</canonical>
            <polymorphic>GCAGCAGTCATGATTGCGACCAGAATCAACCCCCGACGATGACCTGGAAGGCTTTGTGATCTGGTAAAGACGTCCGCGTCGGCTCTCAGACTGATGATATCGAGCTCTTCGGATCGGGAGACTTGTTGTTCTGGTCCGCATATTACCGGATCGGTGAGAGATTTGAGGGTGGTCAAATAGTGAGTGGCTGACAGACCGAAAAGAATGCCCAGTATGATGGTGAAGGTGGACCGTGAGATCGGCATTCTGCAGTTGCTTCGCTGAAACTTTAAAAAAACTAAAAAGAGAGAGACGATTTATAAAGGATCCGGTGAAAGGTAATCTGGTCTTGGAAAATGAGGAAAACTACAGTAATCTACCGATAAGACGACAAAATGTTTCAAGGTGTTAATAGCCTCTACGAAATTCATACTTTTACCAGGCATGAGAACATAGAAACATGTAATTTCTAACATATGGCCCATGTGATCTAGGGCTTTTTGTTTTGTCGATTTATCAARAAATGACTCACCAGACGCATACTCTCGGTGTCTTGATTACCGGAATCGTTGAGCAAGAGTGTCTGCGCCTCCTCGTCCGTCGCCTTCTCTCCTCCGATCCGATACCGATTGATAGTGACACTCGTTTTGACTCTCGTTTCTTTGATTTTCAATAATATCTAATCGGTTGCTAAGTGTTTTCGTCAGGTGTCTCGATGGTGGTCGCAATGGGATAGTGAACTTCTTCTCGCGGGTTTGATGATGAAGATGATTGAGACTGAGTTGAGCAGGTGGCGACATATAATTGCGCGTCAGATGGCACTATGTTTCATTGATTTGCGTCGCTATTTACACCACCGCTGCTTCTCGTGTTAAAATTTGAGCAGAACGCTGAAACAAGACATCATAAGTTCAAATTTCAGATAATTTCAAAAACATATTTTTGAGGTAAACGGAAGAGTCCGGGAAAAAAGAGATAGGTGGAAAACTGTAAGGCAGAAAGAAGAAAAGAGAGCAGATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>382 309 159 106 35 9</canonical_bands>
                <polymorphic_bands>417 309 159 106 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGTTAATAGCCTCTACGAAAT</pcr_primer_p1>
		<pcr_primer_p2>GAGTCAAAACGAGTGTCACTATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTGTTAATAGCCTCTACGAAATTCATACTTTTACCAGGCATGAGAACATAGAAACATGTAATTTCTAACATATGGCCCATGTGATCTAGGGCTTTTTGTTTTGTCGATTTATCAAGAAATGACTCACCAGACGCATACTCTCGGTGTCTTGATTACCGGAATCGTTGAGCAAGAGTGTCTGCGCCTCCTCGTCCGTCGCCTTCTCTCCTCCGATCCGATACCGATTGATAGTGACACTCGTTTTGACTC</canonical_amplicon>
		<polymorphic_amplicon>GGTGTTAATAGCCTCTACGAAATTCATACTTTTACCAGGCATGAGAACATAGAAACATGTAATTTCTAACATATGGCCCATGTGATCTAGGGCTTTTTGTTTTGTCGATTTATCAARAAATGACTCACCAGACGCATACTCTCGGTGTCTTGATTACCGGAATCGTTGAGCAAGAGTGTCTGCGCCTCCTCGTCCGTCGCCTTCTCTCCTCCGATCCGATACCGATTGATAGTGACACTCGTTTTGACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16158</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>427025</contig_pos>
        <strand>+</strand>
        <context>CTATTTACAC[C/T]ACCGCTGCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGCGCGTCAGATGGCACTATGTTTCATTGATTTGCGTCGCTATTTACAC</left_flank>
        <right_flank>ACCGCTGCTTCTCGTGTTAAAATTTGAGCAGAACGCTGAAACAAGACATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGAGGAAAACTACAGTAATCTACCGATAAGACGACAAAATGTTTCAAGGTGTTAATAGCCTCTACGAAATTCATACTTTTACCAGGCATGAGAACATAGAAACATGTAATTTCTAACATATGGCCCATGTGATCTAGGGCTTTTTGTTTTGTCGATTTATCAAGAAATGACTCACCAGACGCATACTCTCGGTGTCTTGATTACCGGAATCGTTGAGCAAGAGTGTCTGCGCCTCCTCGTCCGTCGCCTTCTCTCCTCCGATCCGATACCGATTGATAGTGACACTCGTTTTGACTCTCGTTTCTTTGATTTTCAATAATATCTAATCGGTTGCTAAGTGTTTTCGTCAGGTGTCTCGATGGTGGTCGCAATGGGATAGTGAACTTCTTCTCGCGGGTTTGATGATGAAGATGATTGAGACTGAGTTGAGCAGGTGGCGACATATAATTGCGCGTCAGATGGCACTATGTTTCATTGATTTGCGTCGCTATTTACACCACCGCTGCTTCTCGTGTTAAAATTTGAGCAGAACGCTGAAACAAGACATCATAAGTTCAAATTTCAGATAATTTCAAAAACATATTTTTGAGGTAAACGGAAGAGTCCGGGAAAAAAGAGATAGGTGGAAAACTGTAAGGCAGAAAGAAGAAAAGAGAGCAGATAAATAAAAAAGCGCGAAAAGATCACATACAGAGAGAGCAACAGAAACAAATTGCAGCCACCTAGTGAAAAGAAGATTTTTGCAGAAACGCAGAATCCAATGAAACAAAGAAATAATGCTAGTAACGGAATGGAAGGAGACAGTGACTTAGCACTTGAAAGATCGTCCGAAAGAGAGAAGAAACATAGAAGGATAGGGCCCAGCAATTAAAGTGGTGTGTGGCGCTGGAGACGGGAGAAAATTCATGGAATTCCGGAGAACGAATTCAGAAAGATTCACTTCCTTTCGTTTTCTCTTATGAATGATTGTGGCATTTCCGATTGAGAGAAAAGGCAGA</canonical>
            <polymorphic>AATGAGGAAAACTACAGTAATCTACCGATAAGACGACAAAATGTTTCAAGGTGTTAATAGCCTCTACGAAATTCATACTTTTACCAGGCATGAGAACATAGAAACATGTAATTTCTAACATATGGCCCATGTGATCTAGGGCTTTTTGTTTTGTCGATTTATCAAGAAATGACTCACCAGACGCATACTCTCGGTGTCTTGATTACCGGAATCGTTGAGCAAGAGTGTCTGCGCCTCCTCGTCCGTCGCCTTCTCTCCTCCGATCCGATACCGATTGATAGTGACACTCGTTTTGACTCTCGTTTCTTTGATTTTCAATAATATCTAATCGGTTGCTAAGTGTTTTCGTCAGGTGTCTCGATGGTGGTCGCAATGGGATAGTGAACTTCTTCTCGCGGGTTTGATGATGAAGATGATTGAGACTGAGTTGAGCAGGTGGCGACATATAATTGCGCGTCAGATGGCACTATGTTTCATTGATTTGCGTCGCTATTTACACYACCGCTGCTTCTCGTGTTAAAATTTGAGCAGAACGCTGAAACAAGACATCATAAGTTCAAATTTCAGATAATTTCAAAAACATATTTTTGAGGTAAACGGAAGAGTCCGGGAAAAAAGAGATAGGTGGAAAACTGTAAGGCAGAAAGAAGAAAAGAGAGCAGATAAATAAAAAAGCGCGAAAAGATCACATACAGAGAGAGCAACAGAAACAAATTGCAGCCACCTAGTGAAAAGAAGATTTTTGCAGAAACGCAGAATCCAATGAAACAAAGAAATAATGCTAGTAACGGAATGGAAGGAGACAGTGACTTAGCACTTGAAAGATCGTCCGAAAGAGAGAAGAAACATAGAAGGATAGGGCCCAGCAATTAAAGTGGTGTGTGGCGCTGGAGACGGGAGAAAATTCATGGAATTCCGGAGAACGAATTCAGAAAGATTCACTTCCTTTCGTTTTCTCTTATGAATGATTGTGGCATTTCCGATTGAGAGAAAAGGCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>111 80 78 61 61 57 56 56 55 53 43 35 32 32 31 28 27 20 17 15 13 11 8 7 3 3 3 2 2</canonical_bands>
                <polymorphic_bands>111 80 78 61 61 57 56 56 55 53 43 35 32 32 31 28 27 20 18 17 13 11 8 7 3 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGATGATTGAGACTGAGTTGAG</pcr_primer_p1>
		<pcr_primer_p2>CTCTTTTCTTCTTTCTGCCTTAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGATGATTGAGACTGAGTTGAGCAGGTGGCGACATATAATTGCGCGTCAGATGGCACTATGTTTCATTGATTTGCGTCGCTATTTACACCACCGCTGCTTCTCGTGTTAAAATTTGAGCAGAACGCTGAAACAAGACATCATAAGTTCAAATTTCAGATAATTTCAAAAACATATTTTTGAGGTAAACGGAAGAGTCCGGGAAAAAAGAGATAGGTGGAAAACTGTAAGGCAGAAAGAAGAAAAGAG</canonical_amplicon>
		<polymorphic_amplicon>AAGATGATTGAGACTGAGTTGAGCAGGTGGCGACATATAATTGCGCGTCAGATGGCACTATGTTTCATTGATTTGCGTCGCTATTTACACYACCGCTGCTTCTCGTGTTAAAATTTGAGCAGAACGCTGAAACAAGACATCATAAGTTCAAATTTCAGATAATTTCAAAAACATATTTTTGAGGTAAACGGAAGAGTCCGGGAAAAAAGAGATAGGTGGAAAACTGTAAGGCAGAAAGAAGAAAAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16159</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>479504</contig_pos>
        <strand>+</strand>
        <context>TATGAGTGGG[A/G]AAAAAATTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGGGTGGTCTGTTCTATCACCTGTATAAACACTACAAAATATGAGTGGG</left_flank>
        <right_flank>AAAAAATTAAGAGCTTTATTTGGAAATGAAATTAAACAAAAAGTGCACGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAAAAGATCTTATTGAAACAATGATCGAACGTATTTGGGCGTTTGGGCCTGATAGAGCCAGATCCAATATTCTATTCAACAATGTCGAAAGTTACGATAGAGATCTAATTTGGAGAAAAACCGAATTCGGTGTGAGACGATACGACCAAGCACTTGTTGGTGGATTCGAATTGTTCTGCAACTCTGGACCACTTTGTAATGAAATCATGCATGGAGTCGCTGTAATTGTGGAAGAATGGACTGTGGATGAGGAGGATGGTGCCATCGGAGGACAAATGATGTCAGCAATGAAGGCAACATGCTCAGCAGCTGCGAAAAAGTTGGCTCTTCGACTGGTAGCTGCCATGTACAAGTGTACCGTAACCACTGCTAGTCAGGCGTTGGGAAAAGTGCATGCGGTTTTGTCACAAAGGAAATCCAAGGTTGGTGAGGGATCATGGATCAGTTTTGGGTGGTCTGTTCTATCACCTGTATAAACACTACAAAATATGAGTGGGGAAAAAATTAAGAGCTTTATTTGGAAATGAAATTAAACAAAAAGTGCACGTTCAAATTTATATAATTTCAGGTCCTTTCCGAAGATATCAATGAGGCAACGAATCTCTTCGAAGTGGTATCACTGATGCCTGTTGTTGAGTCATTCTCATTCTGTGATCAACTTCGGAAGTTCACTTCTGGAATGGCATCTGCTCAGCTTCAATTCTCGCACTGGCAAGTGATTGATGAAGATCCCTACTGGACACCGACAACGTTGGAAGAAGTAGAAGAGTTCGGATTGAAAGGAGACAGTCCGAATCATGCCCGAGGATACATGGATGCTGTTAAAAGGCGTAAAGGATTGCCGACTGAAGATCTGATTGTGGAGTCTGCGGAGAAGCAGAGAAATTTGAAAAAAAATAAATAATTTATAGATTTTTATTTTACAGAGTTTCTTTCGATGATTTACTGTATCCTGTTCCAGTTTTTTGTTAACCTTGTTTTGTTAATTTGTTGTTTTT</canonical>
            <polymorphic>ACCAAAAGATCTTATTGAAACAATGATCGAACGTATTTGGGCGTTTGGGCCTGATAGAGCCAGATCCAATATTCTATTCAACAATGTCGAAAGTTACGATAGAGATCTAATTTGGAGAAAAACCGAATTCGGTGTGAGACGATACGACCAAGCACTTGTTGGTGGATTCGAATTGTTCTGCAACTCTGGACCACTTTGTAATGAAATCATGCATGGAGTCGCTGTAATTGTGGAAGAATGGACTGTGGATGAGGAGGATGGTGCCATCGGAGGACAAATGATGTCAGCAATGAAGGCAACATGCTCAGCAGCTGCGAAAAAGTTGGCTCTTCGACTGGTAGCTGCCATGTACAAGTGTACCGTAACCACTGCTAGTCAGGCGTTGGGAAAAGTGCATGCGGTTTTGTCACAAAGGAAATCCAAGGTTGGTGAGGGATCATGGATCAGTTTTGGGTGGTCTGTTCTATCACCTGTATAAACACTACAAAATATGAGTGGGRAAAAAATTAAGAGCTTTATTTGGAAATGAAATTAAACAAAAAGTGCACGTTCAAATTTATATAATTTCAGGTCCTTTCCGAAGATATCAATGAGGCAACGAATCTCTTCGAAGTGGTATCACTGATGCCTGTTGTTGAGTCATTCTCATTCTGTGATCAACTTCGGAAGTTCACTTCTGGAATGGCATCTGCTCAGCTTCAATTCTCGCACTGGCAAGTGATTGATGAAGATCCCTACTGGACACCGACAACGTTGGAAGAAGTAGAAGAGTTCGGATTGAAAGGAGACAGTCCGAATCATGCCCGAGGATACATGGATGCTGTTAAAAGGCGTAAAGGATTGCCGACTGAAGATCTGATTGTGGAGTCTGCGGAGAAGCAGAGAAATTTGAAAAAAAATAAATAATTTATAGATTTTTATTTTACAGAGTTTCTTTCGATGATTTACTGTATCCTGTTCCAGTTTTTTGTTAACCTTGTTTTGTTAATTTGTTGTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTACAAGTGTACCGTAACCAC</pcr_primer_p1>
		<pcr_primer_p2>ATTGATATCTTCGGAAAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATGTACAAGTGTACCGTAACCACTGCTAGTCAGGCGTTGGGAAAAGTGCATGCGGTTTTGTCACAAAGGAAATCCAAGGTTGGTGAGGGATCATGGATCAGTTTTGGGTGGTCTGTTCTATCACCTGTATAAACACTACAAAATATGAGTGGGGAAAAAATTAAGAGCTTTATTTGGAAATGAAATTAAACAAAAAGTGCACGTTCAAATTTATATAATTTCAGGTCCTTTCCGAAGATATCAAT</canonical_amplicon>
		<polymorphic_amplicon>ATGTACAAGTGTACCGTAACCACTGCTAGTCAGGCGTTGGGAAAAGTGCATGCGGTTTTGTCACAAAGGAAATCCAAGGTTGGTGAGGGATCATGGATCAGTTTTGGGTGGTCTGTTCTATCACCTGTATAAACACTACAAAATATGAGTGGGRAAAAAATTAAGAGCTTTATTTGGAAATGAAATTAAACAAAAAGTGCACGTTCAAATTTATATAATTTCAGGTCCTTTCCGAAGATATCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16160</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>480334</contig_pos>
        <strand>+</strand>
        <context>CTTGTCATGT[A/T]TGACCAGCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGCTTCCACTTTTTCGCTATTCCTACTTGTTCCATATTTCTTGTCATGT</left_flank>
        <right_flank>TGACCAGCGACTCTCGTTTTCTCTCTTTTTTGTCCTTACTGCTTGCCAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGTAAAGGATTGCCGACTGAAGATCTGATTGTGGAGTCTGCGGAGAAGCAGAGAAATTTGAAAAAAAATAAATAATTTATAGATTTTTATTTTACAGAGTTTCTTTCGATGATTTACTGTATCCTGTTCCAGTTTTTTGTTAACCTTGTTTTGTTAATTTGTTGTTTTTAATTCTGTTTTCGAGTATTCAGTAAAACAATGTTCTCTTGCTCTGTTCATTTGTAATGTTTCCGGAAGTGTGCTCATGTCACATGGCATACCTGAAACGTTTCTAAACCTTCATTCTCTCTTTATTCGCACTGTTTTATTTACGCGTAGCGGCAGGAGTAGAGCGTAGCGAGAGATTCGAGAGTCAGCGGCACTCTCTTTTTCCTTTTTCTGTGTCAGTGTCTGCGCCTCTACCGTTATCGATTGTCAACGTGCTGGCTGTCTCTTCTTCTGATGTTTTCTGCTTCCACTTTTTCGCTATTCCTACTTGTTCCATATTTCTTGTCATGTTTGACCAGCGACTCTCGTTTTCTCTCTTTTTTGTCCTTACTGCTTGCCAACGTTAGGCTTCTTCTTCTTTTTTCTTCTTCTCTTTTCCCTTTTCGTGTCATCCTTCTTCTTCTTCTGCTACGCGTTCCCTTCTTCTTCTTCTTCTTGTTTGTCAGTTCATTCAGTGTCAAAAGTTCATAGATGCCCATTAATGACTCAAGTCCCAATTAGCCACCATCTTGAGAACAAAGTACGCATCGCTAGCAAAGAATATAGGGGCATCGAACAATTCTCCAACTACATCGTGTAGTCTCAAAGATGGGGTTATTCCTTTATGAAAGACTTCCGCTATAATCAGTCCGTTAGTTTACATTTCCGTCTCTTTCTCCTCTCATTTTGATCGACATGGATTACGAATCGGTGCTCCATGATGCTCCAAATATAGAAGAAATGGACGAAGAGATGGCTGAAGTGGATGATAGTGAGTTATTCGTTTTTATATCCTTATTGGATTTGGTGAAA</canonical>
            <polymorphic>GCGTAAAGGATTGCCGACTGAAGATCTGATTGTGGAGTCTGCGGAGAAGCAGAGAAATTTGAAAAAAAATAAATAATTTATAGATTTTTATTTTACAGAGTTTCTTTCGATGATTTACTGTATCCTGTTCCAGTTTTTTGTTAACCTTGTTTTGTTAATTTGTTGTTTTTAATTCTGTTTTCGAGTATTCAGTAAAACAATGTTCTCTTGCTCTGTTCATTTGTAATGTTTCCGGAAGTGTGCTCATGTCACATGGCATACCTGAAACGTTTCTAAACCTTCATTCTCTCTTTATTCGCACTGTTTTATTTACGCGTAGCGGCAGGAGTAGAGCGTAGCGAGAGATTCGAGAGTCAGCGGCACTCTCTTTTTCCTTTTTCTGTGTCAGTGTCTGCGCCTCTACCGTTATCGATTGTCAACGTGCTGGCTGTCTCTTCTTCTGATGTTTTCTGCTTCCACTTTTTCGCTATTCCTACTTGTTCCATATTTCTTGTCATGTWTGACCAGCGACTCTCGTTTTCTCTCTTTTTTGTCCTTACTGCTTGCCAACGTTAGGCTTCTTCTTCTTTTTTCTTCTTCTCTTTTCCCTTTTCGTGTCATCCTTCTTCTTCTTCTGCTACGCGTTCCCTTCTTCTTCTTCTTCTTGTTTGTCAGTTCATTCAGTGTCAAAAGTTCATAGATGCCCATTAATGACTCAAGTCCCAATTAGCCACCATCTTGAGAACAAAGTACGCATCGCTAGCAAAGAATATAGGGGCATCGAACAATTCTCCAACTACATCGTGTAGTCTCAAAGATGGGGTTATTCCTTTATGAAAGACTTCCGCTATAATCAGTCCGTTAGTTTACATTTCCGTCTCTTTCTCCTCTCATTTTGATCGACATGGATTACGAATCGGTGCTCCATGATGCTCCAAATATAGAAGAAATGGACGAAGAGATGGCTGAAGTGGATGATAGTGAGTTATTCGTTTTTATATCCTTATTGGATTTGGTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCTCTTCTTCTGATGTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>TATGAACTTTTGACACTGAATGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTCTCTTCTTCTGATGTTTTCTGCTTCCACTTTTTCGCTATTCCTACTTGTTCCATATTTCTTGTCATGTTTGACCAGCGACTCTCGTTTTCTCTCTTTTTTGTCCTTACTGCTTGCCAACGTTAGGCTTCTTCTTCTTTTTTCTTCTTCTCTTTTCCCTTTTCGTGTCATCCTTCTTCTTCTTCTGCTACGCGTTCCCTTCTTCTTCTTCTTCTTGTTTGTCAGTTCATTCAGTGTCAAAAGTTCATA</canonical_amplicon>
		<polymorphic_amplicon>TGTCTCTTCTTCTGATGTTTTCTGCTTCCACTTTTTCGCTATTCCTACTTGTTCCATATTTCTTGTCATGTWTGACCAGCGACTCTCGTTTTCTCTCTTTTTTGTCCTTACTGCTTGCCAACGTTAGGCTTCTTCTTCTTTTTTCTTCTTCTCTTTTCCCTTTTCGTGTCATCCTTCTTCTTCTTCTGCTACGCGTTCCCTTCTTCTTCTTCTTCTTGTTTGTCAGTTCATTCAGTGTCAAAAGTTCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16161</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>481452</contig_pos>
        <strand>+</strand>
        <context>CGGAAATMTT[C/T]ATAATTCCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAACTATTCTCGAATATCAAAAATTATCACCTTATTCTTGCGGAAATCTT</left_flank>
        <right_flank>ATAATTCCTTTTTAAGTTGAAAAGGGTAGTTTCCATGTCAGTTTGGTTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAGTCTAGATCATCTATATTTGCACTTTCGGCTCAAAAGGCTTTGCATTTTTTTCGGTCTCCTAATAAAATCAATCTACGGATCTAACCTTTTTCCCCCGTCTTTCCATTTTTATTCCATTCGCTCCATCGAGAAAGATACGGATCGCCTGGACGCATTCGAAGACGACGACGACACAGTATTGTCCATTTTATGCGATCCATCCATTGCCCCTGGATGATCGAGAAGACTTTAGATTTAGTAGATCCTAGGTTCCGTGTGAGAAGATCCGATTTTTGTTCAATTAATTGAAGTTTTGAAAAAATGAAAAGTTCTTTCTGATTCGTTTTTTCTGTTTGCTCTCACAAATAGGTGATCTTTTTTTTGGTTATTCTCTCGTCATTCCGTTCAACAAAAATACTTCCCCTGTAGTTCCTTTTATAACTGACCACCTTTATAATTTTCATATAACTATTCTCGAATATCAAAAATTATCACCTTATTCTTGCGGAAATCTTTATAATTCCTTTTTAAGTTGAAAAGGGTAGTTTCCATGTCAGTTTGGTTCAAATGCTCTGTTTTGCATTTTCAAGCACAGGCTTCTTCTAAGAATATCATTTTTCAGCTTCTGGAAGCACCTTTAGAGTTTCAAATTTCGGGGAACAATCTTGCTCAATCTTCTGATATCCTTTTCATGCTTTGTGTATTGGTTCTATTATGATTTCATGTGACATTTAAAATTCGAATCTGGTAGAAGCAGTAATTATGAATAGGTGTGCTTACTTAGCAACCGATTTTCCAATTACACGGTGGACGAAAACCTCCTACATCACTACCAAAAATATTGCCAGAAAATAATCCTATGCGCTTTCATCTTCTTCTTCTCCTTCAATTGTGTGCACTCCTCACCGGTCCTTTATTATTATTTAGACAACACCTATTCGTTCTTCCACCTATTCGTTCCCCATTCCCCGATGATCATTGAAACACTATGACGTCATGGTCACTTTTTCTGCCAC</canonical>
            <polymorphic>TCAAGTCTAGATCATCTATATTTGCACTTTCGGCTCAAAAGGCTTTGCATTTTTTTCGGTCTCCTAATAAAATCAATCTACGGATCTAACCTTTTTCCCCCGTCTTTCCATTTTTATTCCATTCGCTCCATCGAGAAAGATACGGATCGCCTGGACGCATTCGAAGACGACGACGACACAGTATTGTCCATTTTATGCGATCCATCCATTGCCCCTGGATGATCGAGAAGACTTTAGATTTAGTAGATCCTAGGTTCCGTGTGAGAAGATCCGATTTTTGTTCAATTAATTGAAGTTTTGAAAAAATGAAAAGTTCTTTCTGATTCGTTTTTTCTGTTTGCTCTCACAAATAGGTGATCTTTTTTTTGGTTATTCTCTCGTCATTCCGTTCAACAAAAATACTTCCCCTGTAGTTCCTTTTATAACTGACCACCTTTATAATTTTCATATAACTATTCTCGAATATCAAAAATTATCACCTTATTCTTGCGGAAATCTTYATAATTCCTTTTTAAGTTGAAAAGGGTAGTTTCCATGTCAGTTTGGTTCAAATGCTCTGTTTTGCATTTTCAAGCACAGGCTTCTTCTAAGAATATCATTTTTCAGCTTCTGGAAGCACCTTTAGAGTTTCAAATTTCGGGGAACAATCTTGCTCAATCTTCTGATATCCTTTTCATGCTTTGTGTATTGGTTCTATTATGATTTCATGTGACATTTAAAATTCGAATCTGGTAGAAGCAGTAATTATGAATAGGTGTGCTTACTTAGCAACCGATTTTCCAATTACACGGTGGACGAAAACCTCCTACATCACTACCAAAAATATTGCCAGAAAATAATCCTATGCGCTTTCATCTTCTTCTTCTCCTTCAATTGTGTGCACTCCTCACCGGTCCTTTATTATTATTTAGACAACACCTATTCGTTCTTCCACCTATTCGTTCCCCATTCCCCGATGATCATTGAAACACTATGACGTCATGGTCACTTTTTCTGCCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>499 422 63 16</canonical_bands>
                <polymorphic_bands>562 422 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAAAAATACTTCCCCTGTAGT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTGAAACTCTAAAGGTGCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AACAAAAATACTTCCCCTGTAGTTCCTTTTATAACTGACCACCTTTATAATTTTCATATAACTATTCTCGAATATCAAAAATTATCACCTTATTCTTGCGGAAATCTTTATAATTCCTTTTTAAGTTGAAAAGGGTAGTTTCCATGTCAGTTTGGTTCAAATGCTCTGTTTTGCATTTTCAAGCACAGGCTTCTTCTAAGAATATCATTTTTCAGCTTCTGGAAGCACCTTTAGAGTTTCAAATTT</canonical_amplicon>
		<polymorphic_amplicon>AACAAAAATACTTCCCCTGTAGTTCCTTTTATAACTGACCACCTTTATAATTTTCATATAACTATTCTCGAATATCAAAAATTATCACCTTATTCTTGCGGAAATCTTYATAATTCCTTTTTAAGTTGAAAAGGGTAGTTTCCATGTCAGTTTGGTTCAAATGCTCTGTTTTGCATTTTCAAGCACAGGCTTCTTCTAAGAATATCATTTTTCAGCTTCTGGAAGCACCTTTAGAGTTTCAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16162</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>481449</contig_pos>
        <strand>+</strand>
        <context>TTGCGGAAAT[A/C]TTYATAATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATATAACTATTCTCGAATATCAAAAATTATCACCTTATTCTTGCGGAAAT</left_flank>
        <right_flank>TTTATAATTCCTTTTTAAGTTGAAAAGGGTAGTTTCCATGTCAGTTTGGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTCAAGTCTAGATCATCTATATTTGCACTTTCGGCTCAAAAGGCTTTGCATTTTTTTCGGTCTCCTAATAAAATCAATCTACGGATCTAACCTTTTTCCCCCGTCTTTCCATTTTTATTCCATTCGCTCCATCGAGAAAGATACGGATCGCCTGGACGCATTCGAAGACGACGACGACACAGTATTGTCCATTTTATGCGATCCATCCATTGCCCCTGGATGATCGAGAAGACTTTAGATTTAGTAGATCCTAGGTTCCGTGTGAGAAGATCCGATTTTTGTTCAATTAATTGAAGTTTTGAAAAAATGAAAAGTTCTTTCTGATTCGTTTTTTCTGTTTGCTCTCACAAATAGGTGATCTTTTTTTTGGTTATTCTCTCGTCATTCCGTTCAACAAAAATACTTCCCCTGTAGTTCCTTTTATAACTGACCACCTTTATAATTTTCATATAACTATTCTCGAATATCAAAAATTATCACCTTATTCTTGCGGAAATCTTTATAATTCCTTTTTAAGTTGAAAAGGGTAGTTTCCATGTCAGTTTGGTTCAAATGCTCTGTTTTGCATTTTCAAGCACAGGCTTCTTCTAAGAATATCATTTTTCAGCTTCTGGAAGCACCTTTAGAGTTTCAAATTTCGGGGAACAATCTTGCTCAATCTTCTGATATCCTTTTCATGCTTTGTGTATTGGTTCTATTATGATTTCATGTGACATTTAAAATTCGAATCTGGTAGAAGCAGTAATTATGAATAGGTGTGCTTACTTAGCAACCGATTTTCCAATTACACGGTGGACGAAAACCTCCTACATCACTACCAAAAATATTGCCAGAAAATAATCCTATGCGCTTTCATCTTCTTCTTCTCCTTCAATTGTGTGCACTCCTCACCGGTCCTTTATTATTATTTAGACAACACCTATTCGTTCTTCCACCTATTCGTTCCCCATTCCCCGATGATCATTGAAACACTATGACGTCATGGTCACTTTTTCTGC</canonical>
            <polymorphic>TTCTCAAGTCTAGATCATCTATATTTGCACTTTCGGCTCAAAAGGCTTTGCATTTTTTTCGGTCTCCTAATAAAATCAATCTACGGATCTAACCTTTTTCCCCCGTCTTTCCATTTTTATTCCATTCGCTCCATCGAGAAAGATACGGATCGCCTGGACGCATTCGAAGACGACGACGACACAGTATTGTCCATTTTATGCGATCCATCCATTGCCCCTGGATGATCGAGAAGACTTTAGATTTAGTAGATCCTAGGTTCCGTGTGAGAAGATCCGATTTTTGTTCAATTAATTGAAGTTTTGAAAAAATGAAAAGTTCTTTCTGATTCGTTTTTTCTGTTTGCTCTCACAAATAGGTGATCTTTTTTTTGGTTATTCTCTCGTCATTCCGTTCAACAAAAATACTTCCCCTGTAGTTCCTTTTATAACTGACCACCTTTATAATTTTCATATAACTATTCTCGAATATCAAAAATTATCACCTTATTCTTGCGGAAATMTTTATAATTCCTTTTTAAGTTGAAAAGGGTAGTTTCCATGTCAGTTTGGTTCAAATGCTCTGTTTTGCATTTTCAAGCACAGGCTTCTTCTAAGAATATCATTTTTCAGCTTCTGGAAGCACCTTTAGAGTTTCAAATTTCGGGGAACAATCTTGCTCAATCTTCTGATATCCTTTTCATGCTTTGTGTATTGGTTCTATTATGATTTCATGTGACATTTAAAATTCGAATCTGGTAGAAGCAGTAATTATGAATAGGTGTGCTTACTTAGCAACCGATTTTCCAATTACACGGTGGACGAAAACCTCCTACATCACTACCAAAAATATTGCCAGAAAATAATCCTATGCGCTTTCATCTTCTTCTTCTCCTTCAATTGTGTGCACTCCTCACCGGTCCTTTATTATTATTTAGACAACACCTATTCGTTCTTCCACCTATTCGTTCCCCATTCCCCGATGATCATTGAAACACTATGACGTCATGGTCACTTTTTCTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAAAAATACTTCCCCTGTAGT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTGAAACTCTAAAGGTGCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AACAAAAATACTTCCCCTGTAGTTCCTTTTATAACTGACCACCTTTATAATTTTCATATAACTATTCTCGAATATCAAAAATTATCACCTTATTCTTGCGGAAATCTTTATAATTCCTTTTTAAGTTGAAAAGGGTAGTTTCCATGTCAGTTTGGTTCAAATGCTCTGTTTTGCATTTTCAAGCACAGGCTTCTTCTAAGAATATCATTTTTCAGCTTCTGGAAGCACCTTTAGAGTTTCAAATTT</canonical_amplicon>
		<polymorphic_amplicon>AACAAAAATACTTCCCCTGTAGTTCCTTTTATAACTGACCACCTTTATAATTTTCATATAACTATTCTCGAATATCAAAAATTATCACCTTATTCTTGCGGAAATMTTTATAATTCCTTTTTAAGTTGAAAAGGGTAGTTTCCATGTCAGTTTGGTTCAAATGCTCTGTTTTGCATTTTCAAGCACAGGCTTCTTCTAAGAATATCATTTTTCAGCTTCTGGAAGCACCTTTAGAGTTTCAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16163</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>515870</contig_pos>
        <strand>+</strand>
        <context>GTTTTTCGAA[G/T]GAAGGGCACA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGAGAAGAAGTAAGAAAAGAAAGAAAACGGGAAGCAGATGTTTTTCGAA</left_flank>
        <right_flank>GAAGGGCACATAACGATTGAGACGCTGGGAAGCCTGTACTGCACAGAGTG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAGCTTTATCTGTTCCCATTGTCCATCTATTGTCATTGTTAACCTTGTCTTTTTTGTTGTTAGAATTTGATGTTTCATCTTGAAAAATAATAGGATGGATTTTATATCAGTTTTCAAAAATTATTAATACAAAATAATCGCAAAAAATCATCAAAAATAATATTATGAGAGAGAAAGAGACGGATTTCAGATTTTAGAATTAAAGCACAACCAAAGCAATCAGAGGAGAAGACAAAGTTGGGAATGTTGGAATGGTGGTAAAGCTTGAGTAATGAGAAAAATGAATTTTGGAATGAAATGATAACTAGAACAACACAGGGTAAAGGGATATCAATATCATATAACGATCTACTGAAAAGAAAATTTTGGGATTCAGAAGTTTGACAGGGAAATAGTTCTAGTATGGACAGACACACGTTTTGAATTTCGCTCCCAAATGTTGAGAGAAAGAGAAGAAGTAAGAAAAGAAAGAAAACGGGAAGCAGATGTTTTTCGAAGGAAGGGCACATAACGATTGAGACGCTGGGAAGCCTGTACTGCACAGAGTGGGAGGAACAGTATGTGGGAATGAGAGACGCAGACTTGGGAACGATGCAGGTGGCTCATTAACCGGAAGAAAATGAGTTTCACACAGAGGCTGTTGAAATGATAGGCTTCTAGGAAATTTTGGGTTTTCGTCGTTTCATAATCCTTGTTCAAAAGTTCCCCTGTTTTTCTAGGAGATCCATCACTCATAAAGAATTACACCTCATGTATACAAAAACAACAAATAAACTCTAGAGAGCTCTCTCATCAAGCATATACCATATTGTACAATTCACTTGACGAAGAAGGAGAGAAAGAAAAAAGGTCAATGACCGAATAAAGTATAACTGGCAAACTCGGACTGTGCAATCTGGCGACATCTGCCATTTTCTTAATACGGTCACTCTCATTCTTCTTTCCCTTTCCTCATTCATCCGTGTCTGTATATCGACATGATTGATGATGACGGTGAC</canonical>
            <polymorphic>GAAAGCTTTATCTGTTCCCATTGTCCATCTATTGTCATTGTTAACCTTGTCTTTTTTGTTGTTAGAATTTGATGTTTCATCTTGAAAAATAATAGGATGGATTTTATATCAGTTTTCAAAAATTATTAATACAAAATAATCGCAAAAAATCATCAAAAATAATATTATGAGAGAGAAAGAGACGGATTTCAGATTTTAGAATTAAAGCACAACCAAAGCAATCAGAGGAGAAGACAAAGTTGGGAATGTTGGAATGGTGGTAAAGCTTGAGTAATGAGAAAAATGAATTTTGGAATGAAATGATAACTAGAACAACACAGGGTAAAGGGATATCAATATCATATAACGATCTACTGAAAAGAAAATTTTGGGATTCAGAAGTTTGACAGGGAAATAGTTCTAGTATGGACAGACACACGTTTTGAATTTCGCTCCCAAATGTTGAGAGAAAGAGAAGAAGTAAGAAAAGAAAGAAAACGGGAAGCAGATGTTTTTCGAAKGAAGGGCACATAACGATTGAGACGCTGGGAAGCCTGTACTGCACAGAGTGGGAGGAACAGTATGTGGGAATGAGAGACGCAGACTTGGGAACGATGCAGGTGGCTCATTAACCGGAAGAAAATGAGTTTCACACAGAGGCTGTTGAAATGATAGGCTTCTAGGAAATTTTGGGTTTTCGTCGTTTCATAATCCTTGTTCAAAAGTTCCCCTGTTTTTCTAGGAGATCCATCACTCATAAAGAATTACACCTCATGTATACAAAAACAACAAATAAACTCTAGAGAGCTCTCTCATCAAGCATATACCATATTGTACAATTCACTTGACGAAGAAGGAGAGAAAGAAAAAAGGTCAATGACCGAATAAAGTATAACTGGCAAACTCGGACTGTGCAATCTGGCGACATCTGCCATTTTCTTAATACGGTCACTCTCATTCTTCTTTCCCTTTCCTCATTCATCCGTGTCTGTATATCGACATGATTGATGATGACGGTGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGAAATAGTTCTAGTATGGACAG</pcr_primer_p1>
		<pcr_primer_p2>CTCTGTGTGAAACTCATTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGGAAATAGTTCTAGTATGGACAGACACACGTTTTGAATTTCGCTCCCAAATGTTGAGAGAAAGAGAAGAAGTAAGAAAAGAAAGAAAACGGGAAGCAGATGTTTTTCGAAGGAAGGGCACATAACGATTGAGACGCTGGGAAGCCTGTACTGCACAGAGTGGGAGGAACAGTATGTGGGAATGAGAGACGCAGACTTGGGAACGATGCAGGTGGCTCATTAACCGGAAGAAAATGAGTTTCACACAGAG</canonical_amplicon>
		<polymorphic_amplicon>GGGAAATAGTTCTAGTATGGACAGACACACGTTTTGAATTTCGCTCCCAAATGTTGAGAGAAAGAGAAGAAGTAAGAAAAGAAAGAAAACGGGAAGCAGATGTTTTTCGAAKGAAGGGCACATAACGATTGAGACGCTGGGAAGCCTGTACTGCACAGAGTGGGAGGAACAGTATGTGGGAATGAGAGACGCAGACTTGGGAACGATGCAGGTGGCTCATTAACCGGAAGAAAATGAGTTTCACACAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16164</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>516305</contig_pos>
        <strand>+</strand>
        <context>CGGTCACTCT[C/T]ATTCTTCTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGACTGTGCAATCTGGCGACATCTGCCATTTTCTTAATACGGTCACTCT</left_flank>
        <right_flank>ATTCTTCTTTCCCTTTCCTCATTCATCCGTGTCTGTATATCGACATGATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATGTTGAGAGAAAGAGAAGAAGTAAGAAAAGAAAGAAAACGGGAAGCAGATGTTTTTCGAAGGAAGGGCACATAACGATTGAGACGCTGGGAAGCCTGTACTGCACAGAGTGGGAGGAACAGTATGTGGGAATGAGAGACGCAGACTTGGGAACGATGCAGGTGGCTCATTAACCGGAAGAAAATGAGTTTCACACAGAGGCTGTTGAAATGATAGGCTTCTAGGAAATTTTGGGTTTTCGTCGTTTCATAATCCTTGTTCAAAAGTTCCCCTGTTTTTCTAGGAGATCCATCACTCATAAAGAATTACACCTCATGTATACAAAAACAACAAATAAACTCTAGAGAGCTCTCTCATCAAGCATATACCATATTGTACAATTCACTTGACGAAGAAGGAGAGAAAGAAAAAAGGTCAATGACCGAATAAAGTATAACTGGCAAACTCGGACTGTGCAATCTGGCGACATCTGCCATTTTCTTAATACGGTCACTCTCATTCTTCTTTCCCTTTCCTCATTCATCCGTGTCTGTATATCGACATGATTGATGATGACGGTGACCACCGGGCGTAGGGAAGAGAGAAAACTACATACCGGAAAAAATAGAGAGACGCAGAAAAATAAATCAGTTTGAATGGGATTATAAAAACTATTTGGGAGAGGGAGTCCTAAGATATTGGAAAAGGGTATTATAAAGTAGCTTAGAATCCCTGTTGGGATTGAAATTGTGCCAACATCAGCTGAGCGAGAAGGGCGTTCTGATTCCCGAAATAAGCAGTTTGTGGCGAGTGGAACTGTGGAAACTGGACCGGTTGTTGTGGTCCGGTCATTTTCATAAGAGTCTCAGAGAGTCCAGGCATTCCAAGAAGTAGGGAAGATGGCGACATCTTCACTTCTGCAGGAGCAGGAGCCACTTTAGTTGGAGTCGATGGAACTTCGGGAATCGGAGCAACTACTACAGCTGGAGAATCACACTTCACTGGATCTTCTTTGACA</canonical>
            <polymorphic>CAAATGTTGAGAGAAAGAGAAGAAGTAAGAAAAGAAAGAAAACGGGAAGCAGATGTTTTTCGAAGGAAGGGCACATAACGATTGAGACGCTGGGAAGCCTGTACTGCACAGAGTGGGAGGAACAGTATGTGGGAATGAGAGACGCAGACTTGGGAACGATGCAGGTGGCTCATTAACCGGAAGAAAATGAGTTTCACACAGAGGCTGTTGAAATGATAGGCTTCTAGGAAATTTTGGGTTTTCGTCGTTTCATAATCCTTGTTCAAAAGTTCCCCTGTTTTTCTAGGAGATCCATCACTCATAAAGAATTACACCTCATGTATACAAAAACAACAAATAAACTCTAGAGAGCTCTCTCATCAAGCATATACCATATTGTACAATTCACTTGACGAAGAAGGAGAGAAAGAAAAAAGGTCAATGACCGAATAAAGTATAACTGGCAAACTCGGACTGTGCAATCTGGCGACATCTGCCATTTTCTTAATACGGTCACTCTYATTCTTCTTTCCCTTTCCTCATTCATCCGTGTCTGTATATCGACATGATTGATGATGACGGTGACCACCGGGCGTAGGGAAGAGAGAAAACTACATACCGGAAAAAATAGAGAGACGCAGAAAAATAAATCAGTTTGAATGGGATTATAAAAACTATTTGGGAGAGGGAGTCCTAAGATATTGGAAAAGGGTATTATAAAGTAGCTTAGAATCCCTGTTGGGATTGAAATTGTGCCAACATCAGCTGAGCGAGAAGGGCGTTCTGATTCCCGAAATAAGCAGTTTGTGGCGAGTGGAACTGTGGAAACTGGACCGGTTGTTGTGGTCCGGTCATTTTCATAAGAGTCTCAGAGAGTCCAGGCATTCCAAGAAGTAGGGAAGATGGCGACATCTTCACTTCTGCAGGAGCAGGAGCCACTTTAGTTGGAGTCGATGGAACTTCGGGAATCGGAGCAACTACTACAGCTGGAGAATCACACTTCACTGGATCTTCTTTGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACAATTCACTTGACGAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TATTTTTCTGCGTCTCTCTATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTACAATTCACTTGACGAAGAAGGAGAGAAAGAAAAAAGGTCAATGACCGAATAAAGTATAACTGGCAAACTCGGACTGTGCAATCTGGCGACATCTGCCATTTTCTTAATACGGTCACTCTCATTCTTCTTTCCCTTTCCTCATTCATCCGTGTCTGTATATCGACATGATTGATGATGACGGTGACCACCGGGCGTAGGGAAGAGAGAAAACTACATACCGGAAAAAATAGAGAGACGCAGAAAAATA</canonical_amplicon>
		<polymorphic_amplicon>GTACAATTCACTTGACGAAGAAGGAGAGAAAGAAAAAAGGTCAATGACCGAATAAAGTATAACTGGCAAACTCGGACTGTGCAATCTGGCGACATCTGCCATTTTCTTAATACGGTCACTCTYATTCTTCTTTCCCTTTCCTCATTCATCCGTGTCTGTATATCGACATGATTGATGATGACGGTGACCACCGGGCGTAGGGAAGAGAGAAAACTACATACCGGAAAAAATAGAGAGACGCAGAAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16165</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>520147</contig_pos>
        <strand>+</strand>
        <context>TAAAACACAG[A/G]CGGTTCCAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTATTTTTCCTTTCCTAATCCATACCATATGCCTTTTGTAAAACACAG</left_flank>
        <right_flank>CGGTTCCAGAGGGCCCCCACACATCAAAAAGAACGAATGAATGCATGATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGTGCCACCCAAACCGTAAACTTTGAGCCCATATATCTCGGTTCCTGTGAAAGGATTCAAAAAATAGTCAACTGACAAAATATTGTTGATATTATGATAAACATTTTGCCAGTTGACAACTTTTTGATATCTTCTACAGAAAACGAGGTATATGTGTTCAAAGTTTCAAAAACCATTCGAGCTACGCGGTCGATTTTTTTTTTGGCGTTTTGTAACTTTATTCATAGATACAGTTTTTTTAAATAATTTAGTTTTGTAGCACTTGAGTTTTTCTATCACATTCAATTTAGTTGGTCAGAAAAAAATAATTGTAAAAAAAACTATGACATGGATGAAAGAAGATACCAATGGTTACTTTCGAAAGGGCCACGAAAAGTTCTTCACACTGTCAAGTACAGTAATCTCAACACCTATTCAATCTCCATATGTCAACACCACCAAAAAAATCTTTATTTTTCCTTTCCTAATCCATACCATATGCCTTTTGTAAAACACAGACGGTTCCAGAGGGCCCCCACACATCAAAAAGAACGAATGAATGCATGATTAATGAGGCAGGACCTCTGAGATCACCACTTGCGGTAAAAAAAAACTACAATAGACTGGGAGGAGAAGGGAGGAAGCTTTTGATTGAACAAGAAAAAGAGGAAGTAACCAATGAGCCGAGTCTATTTTTCAAAAAGGAGACCGCCGACGCATGGATGATGTAACCCCTCTTTTTGGGAAGCACAATTGGTACAATTATCAATCGGAAAATGGGAATAAAAAGGGTGTCCAGGTCCGGAAATCACTACTTGTCGGTGTTCCCTTTTCGGAGCCAATATTTGCCTAGAAACGGGAAAAAGAAGAAAAAATGAAGGTGTTTCTTGGCAGAATCGATGCGATGAGGTAGATAAGATGAAGTTTTGATTTGTGTAAAAACTTTCTAGTCTTTTTTTTCTCAAGATAATCCGTTTCGATACTTTAAAATAGTTTCAAGAGAAATAAATAGTTTCTAA</canonical>
            <polymorphic>AGAGTGCCACCCAAACCGTAAACTTTGAGCCCATATATCTCGGTTCCTGTGAAAGGATTCAAAAAATAGTCAACTGACAAAATATTGTTGATATTATGATAAACATTTTGCCAGTTGACAACTTTTTGATATCTTCTACAGAAAACGAGGTATATGTGTTCAAAGTTTCAAAAACCATTCGAGCTACGCGGTCGATTTTTTTTTTGGCGTTTTGTAACTTTATTCATAGATACAGTTTTTTTAAATAATTTAGTTTTGTAGCACTTGAGTTTTTCTATCACATTCAATTTAGTTGGTCAGAAAAAAATAATTGTAAAAAAAACTATGACATGGATGAAAGAAGATACCAATGGTTACTTTCGAAAGGGCCACGAAAAGTTCTTCACACTGTCAAGTACAGTAATCTCAACACCTATTCAATCTCCATATGTCAACACCACCAAAAAAATCTTTATTTTTCCTTTCCTAATCCATACCATATGCCTTTTGTAAAACACAGRCGGTTCCAGAGGGCCCCCACACATCAAAAAGAACGAATGAATGCATGATTAATGAGGCAGGACCTCTGAGATCACCACTTGCGGTAAAAAAAAACTACAATAGACTGGGAGGAGAAGGGAGGAAGCTTTTGATTGAACAAGAAAAAGAGGAAGTAACCAATGAGCCGAGTCTATTTTTCAAAAAGGAGACCGCCGACGCATGGATGATGTAACCCCTCTTTTTGGGAAGCACAATTGGTACAATTATCAATCGGAAAATGGGAATAAAAAGGGTGTCCAGGTCCGGAAATCACTACTTGTCGGTGTTCCCTTTTCGGAGCCAATATTTGCCTAGAAACGGGAAAAAGAAGAAAAAATGAAGGTGTTTCTTGGCAGAATCGATGCGATGAGGTAGATAAGATGAAGTTTTGATTTGTGTAAAAACTTTCTAGTCTTTTTTTTCTCAAGATAATCCGTTTCGATACTTTAAAATAGTTTCAAGAGAAATAAATAGTTTCTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>498 217 155 103 17 10</canonical_bands>
                <polymorphic_bands>601 217 155 17 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACCTATTCAATCTCCATATGTC</pcr_primer_p1>
		<pcr_primer_p2>GGTTACTTCCTCTTTTTCTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CACCTATTCAATCTCCATATGTCAACACCACCAAAAAAATCTTTATTTTTCCTTTCCTAATCCATACCATATGCCTTTTGTAAAACACAGACGGTTCCAGAGGGCCCCCACACATCAAAAAGAACGAATGAATGCATGATTAATGAGGCAGGACCTCTGAGATCACCACTTGCGGTAAAAAAAAACTACAATAGACTGGGAGGAGAAGGGAGGAAGCTTTTGATTGAACAAGAAAAAGAGGAAGTAACC</canonical_amplicon>
		<polymorphic_amplicon>CACCTATTCAATCTCCATATGTCAACACCACCAAAAAAATCTTTATTTTTCCTTTCCTAATCCATACCATATGCCTTTTGTAAAACACAGRCGGTTCCAGAGGGCCCCCACACATCAAAAAGAACGAATGAATGCATGATTAATGAGGCAGGACCTCTGAGATCACCACTTGCGGTAAAAAAAAACTACAATAGACTGGGAGGAGAAGGGAGGAAGCTTTTGATTGAACAAGAAAAAGAGGAAGTAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16166</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>609992</contig_pos>
        <strand>+</strand>
        <context>AACTATACAA[A/C]TCCCCCTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTTATCAATTTTTCCTCCAATTTTATAGCGTATTTTTGAAACTATACAA</left_flank>
        <right_flank>TCCCCCTTCATGTTTACAAATTTAGTAGAAAAAATGCAGTGCTTTGTGTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGTAGGATACATCATCTGCACTTGAGTCACTGATTGTTGTCTCACTGGCCGCCTGGAAAAGATGTGAATGATTACATAACATCTGATTATCTAGAAAAGTCTGATTCTAATTTTTTCGCATGGTTAATTCTAAAAAGTTGAGGAGATTCATTCATTCGTAACCTAACGAGATATACGAGTATATAAGTGAATTTTTCAAGACATGAGCGATATCAATCTCGGTTCAGGGATGTTAGGAAAGACCTTTCCGGAATTTATCGGAATTCCGAAAATTCAGAAAGAAAGCTTTGGGAATACTCCGATCGGAACTTTCGAAATTCCAGATTCGTTCCGAACATCCCTGTGATAGCATTATCAATGTAAATTGGTATTATTTCAAAAAATTTTTCAGCCATACTAATTTTATGTGCTCTGATCTAACTTTATTTTTTCATTTGGCATAAACAACTCTTATCAATTTTTCCTCCAATTTTATAGCGTATTTTTGAAACTATACAAATCCCCCTTCATGTTTACAAATTTAGTAGAAAAAATGCAGTGCTTTGTGTTGAATATAGCAGGTCCCTCTGCATACCGTAACCTATATTTGTTCAAGATCCCCAACCGTCACTTCCTTCTTCACACGTTTTATAGGTCATTGAATTTTTATTTTTTGTTTGTTTGTTGCATGAAAAGGTTTTTTCAAACTTTTCATCGTCACTAAAAGTTTGACGTAGTCGTCGTGTTACTTCATAGTAGGTATAGTGTCGAATTTCTTCGAAATAGCAATTTTACATCGAAAAAGGCAGAAACATCGGGTTTTCTAGTTTTTAAGAGAATCAAGTTAATTGAAGAACGAAAACTGTATTGACTCATATTTACAGTACTGAATAAAATAGAACACTCACCTGAACACCATACCCGTTGCTCATTGTGCACTCTCCCCACTGGAAATGATTCTTCCTGGAAGTGTGGAGACACGCCTCTGTGTAGCCTGCCGAGATGGAACACACAGCAACG</canonical>
            <polymorphic>GCGTAGGATACATCATCTGCACTTGAGTCACTGATTGTTGTCTCACTGGCCGCCTGGAAAAGATGTGAATGATTACATAACATCTGATTATCTAGAAAAGTCTGATTCTAATTTTTTCGCATGGTTAATTCTAAAAAGTTGAGGAGATTCATTCATTCGTAACCTAACGAGATATACGAGTATATAAGTGAATTTTTCAAGACATGAGCGATATCAATCTCGGTTCAGGGATGTTAGGAAAGACCTTTCCGGAATTTATCGGAATTCCGAAAATTCAGAAAGAAAGCTTTGGGAATACTCCGATCGGAACTTTCGAAATTCCAGATTCGTTCCGAACATCCCTGTGATAGCATTATCAATGTAAATTGGTATTATTTCAAAAAATTTTTCAGCCATACTAATTTTATGTGCTCTGATCTAACTTTATTTTTTCATTTGGCATAAACAACTCTTATCAATTTTTCCTCCAATTTTATAGCGTATTTTTGAAACTATACAAMTCCCCCTTCATGTTTACAAATTTAGTAGAAAAAATGCAGTGCTTTGTGTTGAATATAGCAGGTCCCTCTGCATACCGTAACCTATATTTGTTCAAGATCCCCAACCGTCACTTCCTTCTTCACACGTTTTATAGGTCATTGAATTTTTATTTTTTGTTTGTTTGTTGCATGAAAAGGTTTTTTCAAACTTTTCATCGTCACTAAAAGTTTGACGTAGTCGTCGTGTTACTTCATAGTAGGTATAGTGTCGAATTTCTTCGAAATAGCAATTTTACATCGAAAAAGGCAGAAACATCGGGTTTTCTAGTTTTTAAGAGAATCAAGTTAATTGAAGAACGAAAACTGTATTGACTCATATTTACAGTACTGAATAAAATAGAACACTCACCTGAACACCATACCCGTTGCTCATTGTGCACTCTCCCCACTGGAAATGATTCTTCCTGGAAGTGTGGAGACACGCCTCTGTGTAGCCTGCCGAGATGGAACACACAGCAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCATACTAATTTTATGTGCTCT</pcr_primer_p1>
		<pcr_primer_p2>ATGACCTATAAAACGTGTGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCCATACTAATTTTATGTGCTCTGATCTAACTTTATTTTTTCATTTGGCATAAACAACTCTTATCAATTTTTCCTCCAATTTTATAGCGTATTTTTGAAACTATACAAATCCCCCTTCATGTTTACAAATTTAGTAGAAAAAATGCAGTGCTTTGTGTTGAATATAGCAGGTCCCTCTGCATACCGTAACCTATATTTGTTCAAGATCCCCAACCGTCACTTCCTTCTTCACACGTTTTATAGGTCAT</canonical_amplicon>
		<polymorphic_amplicon>GCCATACTAATTTTATGTGCTCTGATCTAACTTTATTTTTTCATTTGGCATAAACAACTCTTATCAATTTTTCCTCCAATTTTATAGCGTATTTTTGAAACTATACAAMTCCCCCTTCATGTTTACAAATTTAGTAGAAAAAATGCAGTGCTTTGTGTTGAATATAGCAGGTCCCTCTGCATACCGTAACCTATATTTGTTCAAGATCCCCAACCGTCACTTCCTTCTTCACACGTTTTATAGGTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16167</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>89002</contig_pos>
        <strand>+</strand>
        <context>TACTTTCTCT[C/T]CTCACCCGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCTTCGCCCAAAAGACATGACATCAAGTTAACACAATTACTTTCTCT</left_flank>
        <right_flank>CTCACCCGTGATTCTTTGACCCTCTTTTCTTCCGCAGTTTCTTTTTATGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTTTTTAATTACCAAAAATAGGTAAACCACACTCTAGTTGATTGGTTTATCAAAGAATTCGTTGTCTTCAGAAAAAAACCAAAAGACCATCTTGTGTTCATCAAAGTACCTACAGATTTGCTGATCACCCCAAAAGTTTCAATTTTGGGTTCCAAAAATCTCATAACATTTTAGAACCCCGTCATTGCCATCTGGTCTCCCCTCTTACTCACACTGAGCATGTGCATCATGAATAAAAAGAGATGCAATAATTAGAATACTGGTCAAAATCACGCGCATGATGTTTCTTCTTTTTCTTCTCGAAAAAGAGATCCGGTCATCTCCTGTATCATCTTTTTTCGCCTTTTTAAATACACGCCGAGAGAACCTATCATCAGCAAAACCAGTACCCACCCTCCATGTGTGTTTTCTTCCTCTTCTTCTTCGTCTTCTGAATCCCATTTCAAATTTTCTTCGCCCAAAAGACATGACATCAAGTTAACACAATTACTTTCTCTTCTCACCCGTGATTCTTTGACCCTCTTTTCTTCCGCAGTTTCTTTTTATGTGACACTAGCAGGAGTAGTAGTAAGATCCCATAAATAGAAAATTTGACGAGCATGTACACTTCATCTCCAGCCTGGACACTCCAGGACAGAAAGAGAAGAAGCATTGTTGGTTTTTGGGAAGGAAATGACGTAATTTGGGAAGAAGTGAGAGAAAAAACCAAAAGGGAACCAAAAAATTTGGTTGAAAGTGTCTGGAGTAGTAGAGCAGACAACAGATGAGAGCCCCCTTTGGATGACCAATAGGGCGCAGGGTCAGCTGACTTTTTTGAAACTAGGCTAGAGCACAATTTGACTGGAAAAAAAGTTATTAGAGTTTTTGGGTTTTCATTTTTTCAAACTTTCCAGTTAAAAGTTTATCCAGGAATAAATTCATGCAAAAATTCAGAAATTGAGAAGTTCTGGAATCCTGAAACTCAGAAACCCCAAAATCCAGAAATCTGAAGTTTCCGA</canonical>
            <polymorphic>GGTTTTTTAATTACCAAAAATAGGTAAACCACACTCTAGTTGATTGGTTTATCAAAGAATTCGTTGTCTTCAGAAAAAAACCAAAAGACCATCTTGTGTTCATCAAAGTACCTACAGATTTGCTGATCACCCCAAAAGTTTCAATTTTGGGTTCCAAAAATCTCATAACATTTTAGAACCCCGTCATTGCCATCTGGTCTCCCCTCTTACTCACACTGAGCATGTGCATCATGAATAAAAAGAGATGCAATAATTAGAATACTGGTCAAAATCACGCGCATGATGTTTCTTCTTTTTCTTCTCGAAAAAGAGATCCGGTCATCTCCTGTATCATCTTTTTTCGCCTTTTTAAATACACGCCGAGAGAACCTATCATCAGCAAAACCAGTACCCACCCTCCATGTGTGTTTTCTTCCTCTTCTTCTTCGTCTTCTGAATCCCATTTCAAATTTTCTTCGCCCAAAAGACATGACATCAAGTTAACACAATTACTTTCTCTYCTCACCCGTGATTCTTTGACCCTCTTTTCTTCCGCAGTTTCTTTTTATGTGACACTAGCAGGAGTAGTAGTAAGATCCCATAAATAGAAAATTTGACGAGCATGTACACTTCATCTCCAGCCTGGACACTCCAGGACAGAAAGAGAAGAAGCATTGTTGGTTTTTGGGAAGGAAATGACGTAATTTGGGAAGAAGTGAGAGAAAAAACCAAAAGGGAACCAAAAAATTTGGTTGAAAGTGTCTGGAGTAGTAGAGCAGACAACAGATGAGAGCCCCCTTTGGATGACCAATAGGGCGCAGGGTCAGCTGACTTTTTTGAAACTAGGCTAGAGCACAATTTGACTGGAAAAAAAGTTATTAGAGTTTTTGGGTTTTCATTTTTTCAAACTTTCCAGTTAAAAGTTTATCCAGGAATAAATTCATGCAAAAATTCAGAAATTGAGAAGTTCTGGAATCCTGAAACTCAGAAACCCCAAAATCCAGAAATCTGAAGTTTCCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCATCTCCTGTATCATCTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTCCTGCTAGTGTCACATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTCATCTCCTGTATCATCTTTTTTCGCCTTTTTAAATACACGCCGAGAGAACCTATCATCAGCAAAACCAGTACCCACCCTCCATGTGTGTTTTCTTCCTCTTCTTCTTCGTCTTCTGAATCCCATTTCAAATTTTCTTCGCCCAAAAGACATGACATCAAGTTAACACAATTACTTTCTCTTCTCACCCGTGATTCTTTGACCCTCTTTTCTTCCGCAGTTTCTTTTTATGTGACACTAGCAGGAGT</canonical_amplicon>
		<polymorphic_amplicon>GGTCATCTCCTGTATCATCTTTTTTCGCCTTTTTAAATACACGCCGAGAGAACCTATCATCAGCAAAACCAGTACCCACCCTCCATGTGTGTTTTCTTCCTCTTCTTCTTCGTCTTCTGAATCCCATTTCAAATTTTCTTCGCCCAAAAGACATGACATCAAGTTAACACAATTACTTTCTCTYCTCACCCGTGATTCTTTGACCCTCTTTTCTTCCGCAGTTTCTTTTTATGTGACACTAGCAGGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16168</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>89037</contig_pos>
        <strand>+</strand>
        <context>TTTTCTTCCG[A/C]AGTTTCTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACAATTACTTTCTCTTCTCACCCGTGATTCTTTGACCCTCTTTTCTTCCG</left_flank>
        <right_flank>AGTTTCTTTTTATGTGACACTAGCAGGAGTAGTAGTAAGATCCCATAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAGTTGATTGGTTTATCAAAGAATTCGTTGTCTTCAGAAAAAAACCAAAAGACCATCTTGTGTTCATCAAAGTACCTACAGATTTGCTGATCACCCCAAAAGTTTCAATTTTGGGTTCCAAAAATCTCATAACATTTTAGAACCCCGTCATTGCCATCTGGTCTCCCCTCTTACTCACACTGAGCATGTGCATCATGAATAAAAAGAGATGCAATAATTAGAATACTGGTCAAAATCACGCGCATGATGTTTCTTCTTTTTCTTCTCGAAAAAGAGATCCGGTCATCTCCTGTATCATCTTTTTTCGCCTTTTTAAATACACGCCGAGAGAACCTATCATCAGCAAAACCAGTACCCACCCTCCATGTGTGTTTTCTTCCTCTTCTTCTTCGTCTTCTGAATCCCATTTCAAATTTTCTTCGCCCAAAAGACATGACATCAAGTTAACACAATTACTTTCTCTTCTCACCCGTGATTCTTTGACCCTCTTTTCTTCCGCAGTTTCTTTTTATGTGACACTAGCAGGAGTAGTAGTAAGATCCCATAAATAGAAAATTTGACGAGCATGTACACTTCATCTCCAGCCTGGACACTCCAGGACAGAAAGAGAAGAAGCATTGTTGGTTTTTGGGAAGGAAATGACGTAATTTGGGAAGAAGTGAGAGAAAAAACCAAAAGGGAACCAAAAAATTTGGTTGAAAGTGTCTGGAGTAGTAGAGCAGACAACAGATGAGAGCCCCCTTTGGATGACCAATAGGGCGCAGGGTCAGCTGACTTTTTTGAAACTAGGCTAGAGCACAATTTGACTGGAAAAAAAGTTATTAGAGTTTTTGGGTTTTCATTTTTTCAAACTTTCCAGTTAAAAGTTTATCCAGGAATAAATTCATGCAAAAATTCAGAAATTGAGAAGTTCTGGAATCCTGAAACTCAGAAACCCCAAAATCCAGAAATCTGAAGTTTCCGAAAACAGAATATCCAGAAATCCAAAAACCAGACATC</canonical>
            <polymorphic>CTAGTTGATTGGTTTATCAAAGAATTCGTTGTCTTCAGAAAAAAACCAAAAGACCATCTTGTGTTCATCAAAGTACCTACAGATTTGCTGATCACCCCAAAAGTTTCAATTTTGGGTTCCAAAAATCTCATAACATTTTAGAACCCCGTCATTGCCATCTGGTCTCCCCTCTTACTCACACTGAGCATGTGCATCATGAATAAAAAGAGATGCAATAATTAGAATACTGGTCAAAATCACGCGCATGATGTTTCTTCTTTTTCTTCTCGAAAAAGAGATCCGGTCATCTCCTGTATCATCTTTTTTCGCCTTTTTAAATACACGCCGAGAGAACCTATCATCAGCAAAACCAGTACCCACCCTCCATGTGTGTTTTCTTCCTCTTCTTCTTCGTCTTCTGAATCCCATTTCAAATTTTCTTCGCCCAAAAGACATGACATCAAGTTAACACAATTACTTTCTCTTCTCACCCGTGATTCTTTGACCCTCTTTTCTTCCGMAGTTTCTTTTTATGTGACACTAGCAGGAGTAGTAGTAAGATCCCATAAATAGAAAATTTGACGAGCATGTACACTTCATCTCCAGCCTGGACACTCCAGGACAGAAAGAGAAGAAGCATTGTTGGTTTTTGGGAAGGAAATGACGTAATTTGGGAAGAAGTGAGAGAAAAAACCAAAAGGGAACCAAAAAATTTGGTTGAAAGTGTCTGGAGTAGTAGAGCAGACAACAGATGAGAGCCCCCTTTGGATGACCAATAGGGCGCAGGGTCAGCTGACTTTTTTGAAACTAGGCTAGAGCACAATTTGACTGGAAAAAAAGTTATTAGAGTTTTTGGGTTTTCATTTTTTCAAACTTTCCAGTTAAAAGTTTATCCAGGAATAAATTCATGCAAAAATTCAGAAATTGAGAAGTTCTGGAATCCTGAAACTCAGAAACCCCAAAATCCAGAAATCTGAAGTTTCCGAAAACAGAATATCCAGAAATCCAAAAACCAGACATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGTTTTCTTCCTCTTCTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>ATGCTTCTTCTCTTTCTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGTTTTCTTCCTCTTCTTCTTCGTCTTCTGAATCCCATTTCAAATTTTCTTCGCCCAAAAGACATGACATCAAGTTAACACAATTACTTTCTCTTCTCACCCGTGATTCTTTGACCCTCTTTTCTTCCGCAGTTTCTTTTTATGTGACACTAGCAGGAGTAGTAGTAAGATCCCATAAATAGAAAATTTGACGAGCATGTACACTTCATCTCCAGCCTGGACACTCCAGGACAGAAAGAGAAGAAGCAT</canonical_amplicon>
		<polymorphic_amplicon>GTGTTTTCTTCCTCTTCTTCTTCGTCTTCTGAATCCCATTTCAAATTTTCTTCGCCCAAAAGACATGACATCAAGTTAACACAATTACTTTCTCTTCTCACCCGTGATTCTTTGACCCTCTTTTCTTCCGMAGTTTCTTTTTATGTGACACTAGCAGGAGTAGTAGTAAGATCCCATAAATAGAAAATTTGACGAGCATGTACACTTCATCTCCAGCCTGGACACTCCAGGACAGAAAGAGAAGAAGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16169</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>89221</contig_pos>
        <strand>+</strand>
        <context>CAAAAGGGAA[A/C]CAAAAAATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGGAAATGACGTAATTTGGGAAGAAGTGAGAGAAAAAACCAAAAGGGAA</left_flank>
        <right_flank>CAAAAAATTTGGTTGAAAGTGTCTGGAGTAGTAGAGCAGACAACAGATGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCATGTGCATCATGAATAAAAAGAGATGCAATAATTAGAATACTGGTCAAAATCACGCGCATGATGTTTCTTCTTTTTCTTCTCGAAAAAGAGATCCGGTCATCTCCTGTATCATCTTTTTTCGCCTTTTTAAATACACGCCGAGAGAACCTATCATCAGCAAAACCAGTACCCACCCTCCATGTGTGTTTTCTTCCTCTTCTTCTTCGTCTTCTGAATCCCATTTCAAATTTTCTTCGCCCAAAAGACATGACATCAAGTTAACACAATTACTTTCTCTTCTCACCCGTGATTCTTTGACCCTCTTTTCTTCCGCAGTTTCTTTTTATGTGACACTAGCAGGAGTAGTAGTAAGATCCCATAAATAGAAAATTTGACGAGCATGTACACTTCATCTCCAGCCTGGACACTCCAGGACAGAAAGAGAAGAAGCATTGTTGGTTTTTGGGAAGGAAATGACGTAATTTGGGAAGAAGTGAGAGAAAAAACCAAAAGGGAACCAAAAAATTTGGTTGAAAGTGTCTGGAGTAGTAGAGCAGACAACAGATGAGAGCCCCCTTTGGATGACCAATAGGGCGCAGGGTCAGCTGACTTTTTTGAAACTAGGCTAGAGCACAATTTGACTGGAAAAAAAGTTATTAGAGTTTTTGGGTTTTCATTTTTTCAAACTTTCCAGTTAAAAGTTTATCCAGGAATAAATTCATGCAAAAATTCAGAAATTGAGAAGTTCTGGAATCCTGAAACTCAGAAACCCCAAAATCCAGAAATCTGAAGTTTCCGAAAACAGAATATCCAGAAATCCAAAAACCAGACATCGAGAAATCTAGAATTCCATTAGAACTGATAATCTACATAACTTGAAAATATTGGAAATTCTTAGAACCAAAAATCCAGAATTCCAAAATTTCAAGATTCCCAAGTCTGCAAATCTAGAAAATTGAAAATGCAGAATACAGAAAATCAGAAATTCCAAAGGAACCCAGAAATTAGTAATAAATTC</canonical>
            <polymorphic>GCATGTGCATCATGAATAAAAAGAGATGCAATAATTAGAATACTGGTCAAAATCACGCGCATGATGTTTCTTCTTTTTCTTCTCGAAAAAGAGATCCGGTCATCTCCTGTATCATCTTTTTTCGCCTTTTTAAATACACGCCGAGAGAACCTATCATCAGCAAAACCAGTACCCACCCTCCATGTGTGTTTTCTTCCTCTTCTTCTTCGTCTTCTGAATCCCATTTCAAATTTTCTTCGCCCAAAAGACATGACATCAAGTTAACACAATTACTTTCTCTTCTCACCCGTGATTCTTTGACCCTCTTTTCTTCCGCAGTTTCTTTTTATGTGACACTAGCAGGAGTAGTAGTAAGATCCCATAAATAGAAAATTTGACGAGCATGTACACTTCATCTCCAGCCTGGACACTCCAGGACAGAAAGAGAAGAAGCATTGTTGGTTTTTGGGAAGGAAATGACGTAATTTGGGAAGAAGTGAGAGAAAAAACCAAAAGGGAAMCAAAAAATTTGGTTGAAAGTGTCTGGAGTAGTAGAGCAGACAACAGATGAGAGCCCCCTTTGGATGACCAATAGGGCGCAGGGTCAGCTGACTTTTTTGAAACTAGGCTAGAGCACAATTTGACTGGAAAAAAAGTTATTAGAGTTTTTGGGTTTTCATTTTTTCAAACTTTCCAGTTAAAAGTTTATCCAGGAATAAATTCATGCAAAAATTCAGAAATTGAGAAGTTCTGGAATCCTGAAACTCAGAAACCCCAAAATCCAGAAATCTGAAGTTTCCGAAAACAGAATATCCAGAAATCCAAAAACCAGACATCGAGAAATCTAGAATTCCATTAGAACTGATAATCTACATAACTTGAAAATATTGGAAATTCTTAGAACCAAAAATCCAGAATTCCAAAATTTCAAGATTCCCAAGTCTGCAAATCTAGAAAATTGAAAATGCAGAATACAGAAAATCAGAAATTCCAAAGGAACCCAGAAATTAGTAATAAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>498 479 23</canonical_bands>
                <polymorphic_bands>977 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCCAGGACAGAAAGAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TGAAAACCCAAAAACTCTAATAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTCCAGGACAGAAAGAGAAGAAGCATTGTTGGTTTTTGGGAAGGAAATGACGTAATTTGGGAAGAAGTGAGAGAAAAAACCAAAAGGGAACCAAAAAATTTGGTTGAAAGTGTCTGGAGTAGTAGAGCAGACAACAGATGAGAGCCCCCTTTGGATGACCAATAGGGCGCAGGGTCAGCTGACTTTTTTGAAACTAGGCTAGAGCACAATTTGACTGGAAAAAAAGTTATTAGAGTTTTTGGGTTTTCA</canonical_amplicon>
		<polymorphic_amplicon>ACTCCAGGACAGAAAGAGAAGAAGCATTGTTGGTTTTTGGGAAGGAAATGACGTAATTTGGGAAGAAGTGAGAGAAAAAACCAAAAGGGAAMCAAAAAATTTGGTTGAAAGTGTCTGGAGTAGTAGAGCAGACAACAGATGAGAGCCCCCTTTGGATGACCAATAGGGCGCAGGGTCAGCTGACTTTTTTGAAACTAGGCTAGAGCACAATTTGACTGGAAAAAAAGTTATTAGAGTTTTTGGGTTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16170</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>152461</contig_pos>
        <strand>+</strand>
        <context>AAAAAGAGAA[C/T]RCGATTGTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCCAACGAAATCACGGTTGTACAAGTCCTTGGAGATCTGAAAAAGAGAA</left_flank>
        <right_flank>GCGATTGTTAATAAATGTGCAAAAAAACCACTTACTCTTGCCGTAGTTGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAGATGAATTATAAGGTGAGGACTGTGACTATAGCCAAAACAAATTAACTCACCTCCTCTCTAACAATCGACACGGTATGCCATTTTCCATCGTTGTAGTTCGAGTTCTCAGTCATGAACTGTTCGGTTCCGGATCCCAAATCCACGGATAACTTGATCAAACCATCAAAGAGTTCAAGAGACATGAAATCTCTATCCTTTCCGACAAAGAACAACAATCCTTGTGGAGAGAATGTCAAGAAGGAGAGCGAGATCTTGGTGGCCTTTCTTGGATTCCAGTGACTTGGTTTATAGGATGTATAACCTTCTCCGTCCAAAGAAATCACGAGCTCATCGGCGTTATCAGTCATCTTTGGCTTCTTCTGGGCTCCACCAACATTCACATTTCCCTTTTCTTTGGTGTTCCAGAGTCCGATTGGCTCTCCATGAAGCTTCAAAAGCTCAATGTCTCCAACGAAATCACGGTTGTACAAGTCCTTGGAGATCTGAAAAAGAGAACGCGATTGTTAATAAATGTGCAAAAAAACCACTTACTCTTGCCGTAGTTGGAATTCCTCCAATGAAAAGCTTCGAAATCTGTTGATTCAAATTGAGCACACTCTTATTTCCTCCGGCAACTGAGCTCTTCGTTTCTGCAGTTTCAACACTGTTTGGCTTGGATAGTGTCGCATTCACAGTCTTTCCGATTCTCTCAATATTCAATCTTCTCCACAATCCATCGTTAACCAGAGTCTCCAATTTAACAACAGCTGGAGCATCTCCCAAATCTACAGTAATCTTCAGGCGACCGTATTCGATTTCAGCAGCGACATAATCGGCAGTTGGCACCGCACGACTTCCGACAGCAGTTTCCTCGTTTCCGAAGAAGAATGGAATTCCGTGTTGTTCTTCGGTACGGAAATAGAATGAGATGTCAGCATGGGCGGCGGATCGAGTAACTCTTTGTGGGATGTTGAGGTCGAGAGATGATCCACGATTGAAGTGGGCTCCAAGCTTGAT</canonical>
            <polymorphic>TAAGATGAATTATAAGGTGAGGACTGTGACTATAGCCAAAACAAATTAACTCACCTCCTCTCTAACAATCGACACGGTATGCCATTTTCCATCGTTGTAGTTCGAGTTCTCAGTCATGAACTGTTCGGTTCCGGATCCCAAATCCACGGATAACTTGATCAAACCATCAAAGAGTTCAAGAGACATGAAATCTCTATCCTTTCCGACAAAGAACAACAATCCTTGTGGAGAGAATGTCAAGAAGGAGAGCGAGATCTTGGTGGCCTTTCTTGGATTCCAGTGACTTGGTTTATAGGATGTATAACCTTCTCCGTCCAAAGAAATCACGAGCTCATCGGCGTTATCAGTCATCTTTGGCTTCTTCTGGGCTCCACCAACATTCACATTTCCCTTTTCTTTGGTGTTCCAGAGTCCGATTGGCTCTCCATGAAGCTTCAAAAGCTCAATGTCTCCAACGAAATCACGGTTGTACAAGTCCTTGGAGATCTGAAAAAGAGAAYGCGATTGTTAATAAATGTGCAAAAAAACCACTTACTCTTGCCGTAGTTGGAATTCCTCCAATGAAAAGCTTCGAAATCTGTTGATTCAAATTGAGCACACTCTTATTTCCTCCGGCAACTGAGCTCTTCGTTTCTGCAGTTTCAACACTGTTTGGCTTGGATAGTGTCGCATTCACAGTCTTTCCGATTCTCTCAATATTCAATCTTCTCCACAATCCATCGTTAACCAGAGTCTCCAATTTAACAACAGCTGGAGCATCTCCCAAATCTACAGTAATCTTCAGGCGACCGTATTCGATTTCAGCAGCGACATAATCGGCAGTTGGCACCGCACGACTTCCGACAGCAGTTTCCTCGTTTCCGAAGAAGAATGGAATTCCGTGTTGTTCTTCGGTACGGAAATAGAATGAGATGTCAGCATGGGCGGCGGATCGAGTAACTCTTTGTGGGATGTTGAGGTCGAGAGATGATCCACGATTGAAGTGGGCTCCAAGCTTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTCATCTTTGGCTTCTTCTG</pcr_primer_p1>
		<pcr_primer_p2>CTCAATTTGAATCAACAGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTCATCTTTGGCTTCTTCTGGGCTCCACCAACATTCACATTTCCCTTTTCTTTGGTGTTCCAGAGTCCGATTGGCTCTCCATGAAGCTTCAAAAGCTCAATGTCTCCAACGAAATCACGGTTGTACAAGTCCTTGGAGATCTGAAAAAGAGAACGCGATTGTTAATAAATGTGCAAAAAAACCACTTACTCTTGCCGTAGTTGGAATTCCTCCAATGAAAAGCTTCGAAATCTGTTGATTCAAATTGAG</canonical_amplicon>
		<polymorphic_amplicon>AGTCATCTTTGGCTTCTTCTGGGCTCCACCAACATTCACATTTCCCTTTTCTTTGGTGTTCCAGAGTCCGATTGGCTCTCCATGAAGCTTCAAAAGCTCAATGTCTCCAACGAAATCACGGTTGTACAAGTCCTTGGAGATCTGAAAAAGAGAAYGCGATTGTTAATAAATGTGCAAAAAAACCACTTACTCTTGCCGTAGTTGGAATTCCTCCAATGAAAAGCTTCGAAATCTGTTGATTCAAATTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16171</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>152462</contig_pos>
        <strand>+</strand>
        <context>AAAAGAGAAY[A/G]CGATTGTTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCAACGAAATCACGGTTGTACAAGTCCTTGGAGATCTGAAAAAGAGAAC</left_flank>
        <right_flank>CGATTGTTAATAAATGTGCAAAAAAACCACTTACTCTTGCCGTAGTTGGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGATGAATTATAAGGTGAGGACTGTGACTATAGCCAAAACAAATTAACTCACCTCCTCTCTAACAATCGACACGGTATGCCATTTTCCATCGTTGTAGTTCGAGTTCTCAGTCATGAACTGTTCGGTTCCGGATCCCAAATCCACGGATAACTTGATCAAACCATCAAAGAGTTCAAGAGACATGAAATCTCTATCCTTTCCGACAAAGAACAACAATCCTTGTGGAGAGAATGTCAAGAAGGAGAGCGAGATCTTGGTGGCCTTTCTTGGATTCCAGTGACTTGGTTTATAGGATGTATAACCTTCTCCGTCCAAAGAAATCACGAGCTCATCGGCGTTATCAGTCATCTTTGGCTTCTTCTGGGCTCCACCAACATTCACATTTCCCTTTTCTTTGGTGTTCCAGAGTCCGATTGGCTCTCCATGAAGCTTCAAAAGCTCAATGTCTCCAACGAAATCACGGTTGTACAAGTCCTTGGAGATCTGAAAAAGAGAACGCGATTGTTAATAAATGTGCAAAAAAACCACTTACTCTTGCCGTAGTTGGAATTCCTCCAATGAAAAGCTTCGAAATCTGTTGATTCAAATTGAGCACACTCTTATTTCCTCCGGCAACTGAGCTCTTCGTTTCTGCAGTTTCAACACTGTTTGGCTTGGATAGTGTCGCATTCACAGTCTTTCCGATTCTCTCAATATTCAATCTTCTCCACAATCCATCGTTAACCAGAGTCTCCAATTTAACAACAGCTGGAGCATCTCCCAAATCTACAGTAATCTTCAGGCGACCGTATTCGATTTCAGCAGCGACATAATCGGCAGTTGGCACCGCACGACTTCCGACAGCAGTTTCCTCGTTTCCGAAGAAGAATGGAATTCCGTGTTGTTCTTCGGTACGGAAATAGAATGAGATGTCAGCATGGGCGGCGGATCGAGTAACTCTTTGTGGGATGTTGAGGTCGAGAGATGATCCACGATTGAAGTGGGCTCCAAGCTTGATC</canonical>
            <polymorphic>AAGATGAATTATAAGGTGAGGACTGTGACTATAGCCAAAACAAATTAACTCACCTCCTCTCTAACAATCGACACGGTATGCCATTTTCCATCGTTGTAGTTCGAGTTCTCAGTCATGAACTGTTCGGTTCCGGATCCCAAATCCACGGATAACTTGATCAAACCATCAAAGAGTTCAAGAGACATGAAATCTCTATCCTTTCCGACAAAGAACAACAATCCTTGTGGAGAGAATGTCAAGAAGGAGAGCGAGATCTTGGTGGCCTTTCTTGGATTCCAGTGACTTGGTTTATAGGATGTATAACCTTCTCCGTCCAAAGAAATCACGAGCTCATCGGCGTTATCAGTCATCTTTGGCTTCTTCTGGGCTCCACCAACATTCACATTTCCCTTTTCTTTGGTGTTCCAGAGTCCGATTGGCTCTCCATGAAGCTTCAAAAGCTCAATGTCTCCAACGAAATCACGGTTGTACAAGTCCTTGGAGATCTGAAAAAGAGAACRCGATTGTTAATAAATGTGCAAAAAAACCACTTACTCTTGCCGTAGTTGGAATTCCTCCAATGAAAAGCTTCGAAATCTGTTGATTCAAATTGAGCACACTCTTATTTCCTCCGGCAACTGAGCTCTTCGTTTCTGCAGTTTCAACACTGTTTGGCTTGGATAGTGTCGCATTCACAGTCTTTCCGATTCTCTCAATATTCAATCTTCTCCACAATCCATCGTTAACCAGAGTCTCCAATTTAACAACAGCTGGAGCATCTCCCAAATCTACAGTAATCTTCAGGCGACCGTATTCGATTTCAGCAGCGACATAATCGGCAGTTGGCACCGCACGACTTCCGACAGCAGTTTCCTCGTTTCCGAAGAAGAATGGAATTCCGTGTTGTTCTTCGGTACGGAAATAGAATGAGATGTCAGCATGGGCGGCGGATCGAGTAACTCTTTGTGGGATGTTGAGGTCGAGAGATGATCCACGATTGAAGTGGGCTCCAAGCTTGATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTCATCTTTGGCTTCTTCTG</pcr_primer_p1>
		<pcr_primer_p2>CTCAATTTGAATCAACAGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTCATCTTTGGCTTCTTCTGGGCTCCACCAACATTCACATTTCCCTTTTCTTTGGTGTTCCAGAGTCCGATTGGCTCTCCATGAAGCTTCAAAAGCTCAATGTCTCCAACGAAATCACGGTTGTACAAGTCCTTGGAGATCTGAAAAAGAGAACGCGATTGTTAATAAATGTGCAAAAAAACCACTTACTCTTGCCGTAGTTGGAATTCCTCCAATGAAAAGCTTCGAAATCTGTTGATTCAAATTGAG</canonical_amplicon>
		<polymorphic_amplicon>AGTCATCTTTGGCTTCTTCTGGGCTCCACCAACATTCACATTTCCCTTTTCTTTGGTGTTCCAGAGTCCGATTGGCTCTCCATGAAGCTTCAAAAGCTCAATGTCTCCAACGAAATCACGGTTGTACAAGTCCTTGGAGATCTGAAAAAGAGAACRCGATTGTTAATAAATGTGCAAAAAAACCACTTACTCTTGCCGTAGTTGGAATTCCTCCAATGAAAAGCTTCGAAATCTGTTGATTCAAATTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16172</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>156219</contig_pos>
        <strand>+</strand>
        <context>CGGACATCTA[A/G]AACATGCAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCCACTGTCATCGGTGGTTAGGAAAGAAGACATGTCGACGGACATCTA</left_flank>
        <right_flank>AACATGCAAGAATTTTAAAGACAGAAGTTCATTATTTTCAACTTACGGTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACAGAGTCAGCTCCATTCGGTTCAGAGATTTCGAGTCCGAATTCGTAGAGGGTGCTGGTCTTTGGATGATCAAAGTATGAAGCCTTCAAGGTAATATTTTGAAGAGAGTGGAGGACCTTCATCAGTTCTTCTCTAGTGACAGGCTTTCCTTCAGTCGTTAGGAAGTTCTCTGGAACAAGTTTGCACTTGACAGTGAATTGCTCTTCCGGATTAGTTGGTTGTTCGGTGGCCCAGTGTTCAATAGTCATGTTGGCTCCAGTGAGACGGATATCAGCGTCACTGTTCATCTTCTTCTTTCCGACACGTGGCACTGCGGACAGCTTGAAAGTGAGCTTGAGTCCGTAGCTGGTGGTGTAATCGTTGGTGACAATTGGAACAATGAAGTAAACAGAGTTTGGTGATGTCTCTTCAGAAGTGTAAAGTACGGTATCATCCTTGTTGTCAACCATTCCACTGTCATCGGTGGTTAGGAAAGAAGACATGTCGACGGACATCTAAAACATGCAAGAATTTTAAAGACAGAAGTTCATTATTTTCAACTTACGGTGGTCACTGGGAACATGCTGGATCTACAACTGTCAGTCACTCCAAAGCAGAAGCAGTTGACACATCCTAATGGATTTTCAGCGGACAAATCGAAAGTTCCAGCTTTGCAAGCCTCACATCTTGCTCCGTAAACGTTTTCCTTACACTTGCACTGAGCATTCGTCGCGTCACAAATCTCTTCAGTAGTTCCATCTCTATTACAAGAGCATCCGTAGCAATGTGGGAATCCGTAGAATCCAGCCAAGCAACGATCACACTGACGTCCTCCCATTGATTCACGGCACAAGCATTGCCCAGATTCTGGGTCACAAACGAGGTTTCCTCCTTCGGATCCTTGTGGATGACATCCACACTTTTGGCATCCGATGAGTGGATCGTATCCGAAAGCGTTGCTGACACATCTGTCACAGGATTGTCCTTCGACGTGTGGCGGGCAGAAGCATTGGCCGGTT</canonical>
            <polymorphic>TCACAGAGTCAGCTCCATTCGGTTCAGAGATTTCGAGTCCGAATTCGTAGAGGGTGCTGGTCTTTGGATGATCAAAGTATGAAGCCTTCAAGGTAATATTTTGAAGAGAGTGGAGGACCTTCATCAGTTCTTCTCTAGTGACAGGCTTTCCTTCAGTCGTTAGGAAGTTCTCTGGAACAAGTTTGCACTTGACAGTGAATTGCTCTTCCGGATTAGTTGGTTGTTCGGTGGCCCAGTGTTCAATAGTCATGTTGGCTCCAGTGAGACGGATATCAGCGTCACTGTTCATCTTCTTCTTTCCGACACGTGGCACTGCGGACAGCTTGAAAGTGAGCTTGAGTCCGTAGCTGGTGGTGTAATCGTTGGTGACAATTGGAACAATGAAGTAAACAGAGTTTGGTGATGTCTCTTCAGAAGTGTAAAGTACGGTATCATCCTTGTTGTCAACCATTCCACTGTCATCGGTGGTTAGGAAAGAAGACATGTCGACGGACATCTARAACATGCAAGAATTTTAAAGACAGAAGTTCATTATTTTCAACTTACGGTGGTCACTGGGAACATGCTGGATCTACAACTGTCAGTCACTCCAAAGCAGAAGCAGTTGACACATCCTAATGGATTTTCAGCGGACAAATCGAAAGTTCCAGCTTTGCAAGCCTCACATCTTGCTCCGTAAACGTTTTCCTTACACTTGCACTGAGCATTCGTCGCGTCACAAATCTCTTCAGTAGTTCCATCTCTATTACAAGAGCATCCGTAGCAATGTGGGAATCCGTAGAATCCAGCCAAGCAACGATCACACTGACGTCCTCCCATTGATTCACGGCACAAGCATTGCCCAGATTCTGGGTCACAAACGAGGTTTCCTCCTTCGGATCCTTGTGGATGACATCCACACTTTTGGCATCCGATGAGTGGATCGTATCCGAAAGCGTTGCTGACACATCTGTCACAGGATTGTCCTTCGACGTGTGGCGGGCAGAAGCATTGGCCGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAAGTAAACAGAGTTTGGTGA</pcr_primer_p1>
		<pcr_primer_p2>CTGAAAATCCATTAGGATGTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGAAGTAAACAGAGTTTGGTGATGTCTCTTCAGAAGTGTAAAGTACGGTATCATCCTTGTTGTCAACCATTCCACTGTCATCGGTGGTTAGGAAAGAAGACATGTCGACGGACATCTAAAACATGCAAGAATTTTAAAGACAGAAGTTCATTATTTTCAACTTACGGTGGTCACTGGGAACATGCTGGATCTACAACTGTCAGTCACTCCAAAGCAGAAGCAGTTGACACATCCTAATGGATTTTCAG</canonical_amplicon>
		<polymorphic_amplicon>ATGAAGTAAACAGAGTTTGGTGATGTCTCTTCAGAAGTGTAAAGTACGGTATCATCCTTGTTGTCAACCATTCCACTGTCATCGGTGGTTAGGAAAGAAGACATGTCGACGGACATCTARAACATGCAAGAATTTTAAAGACAGAAGTTCATTATTTTCAACTTACGGTGGTCACTGGGAACATGCTGGATCTACAACTGTCAGTCACTCCAAAGCAGAAGCAGTTGACACATCCTAATGGATTTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16173</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>213905</contig_pos>
        <strand>+</strand>
        <context>CCTATGTGGG[G/T]ATTATCCTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGGTGGCAAAATGGGGGAGAAATTGGGGCTGATGTGGGGCCTATGTGGG</left_flank>
        <right_flank>ATTATCCTGAGATGTTTTTAAATCTCCCAACATCACCCCTTTTTTAATTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTACTATAACCAATATTCTTCCTTCTCCGTACCCGAATCGTTCACGAAGGTAAACGAAAAAGGAACTTGTGAGTGATTTTCCTTGTTTCTATCGAAAGTTATTTTATTTTTTCAGGACTGGTACGGAAAAAGGAGAAAGACAACAACGATGAAAAACGGATTGAATAACTCCAGAGAAAGATTAATGAATCACGGAGAGAAAAATCGAGAATGTAGGTGTCATGAAAGGTTGTTCCCCCTATAATCTCCATTTTCCAGCAAACTCAGCAAAAAACTGTACAGGATCTGACCGACTACTCCAACAACATATAATTTCTTTACTTTCAATTCCAGCTCCATCTTTTGATTTTTACTGACTGTTTGTTCTTCTAGAGTCTATTTTGAAAGACTGTTTTGCGTTTATGTGTAACTAATAAATTTGGTTTTGAAAGCCTATGTCGTTTGGAAATCGGTGGCAAAATGGGGGAGAAATTGGGGCTGATGTGGGGCCTATGTGGGTATTATCCTGAGATGTTTTTAAATCTCCCAACATCACCCCTTTTTTAATTTTTGAAAATTCCCCTCCAGCTTCTTACAGCTGGAGAAATTGATAACTGGATAGTTTGTTCTTCCATCAAGGAACAGTACACTTTACTAATTTTTCCGGCACGTGGTATTTTCTGAAAACACCCTAAAACCACACCCGAATAATGATTTATAACTCCCGTTTCCTTCAAGTCATTCACAAACTCTAATGACGTTGTCACAACAGTAGACTACAGTGCTCCGGAACTAAAAGAACAAAAACCATAACTCAAACTCCCAGCACTCTCTAGCTTCTCTGCGTTTCTATCATGTGAATTCGTATGTTTTCTAGCGGTTTTTCTGAAAAATAAAACGAAATGGGGTTTCCCATAAACAACAAACGATTGTGTCGCTTCTTCTTTTTCATCATCATTCTTTCTTCCCATCCATTCAAATGATGATGCATCTCAAATTGTTCTCCGTGTTTCTTCTTCT</canonical>
            <polymorphic>TTTACTATAACCAATATTCTTCCTTCTCCGTACCCGAATCGTTCACGAAGGTAAACGAAAAAGGAACTTGTGAGTGATTTTCCTTGTTTCTATCGAAAGTTATTTTATTTTTTCAGGACTGGTACGGAAAAAGGAGAAAGACAACAACGATGAAAAACGGATTGAATAACTCCAGAGAAAGATTAATGAATCACGGAGAGAAAAATCGAGAATGTAGGTGTCATGAAAGGTTGTTCCCCCTATAATCTCCATTTTCCAGCAAACTCAGCAAAAAACTGTACAGGATCTGACCGACTACTCCAACAACATATAATTTCTTTACTTTCAATTCCAGCTCCATCTTTTGATTTTTACTGACTGTTTGTTCTTCTAGAGTCTATTTTGAAAGACTGTTTTGCGTTTATGTGTAACTAATAAATTTGGTTTTGAAAGCCTATGTCGTTTGGAAATCGGTGGCAAAATGGGGGAGAAATTGGGGCTGATGTGGGGCCTATGTGGGKATTATCCTGAGATGTTTTTAAATCTCCCAACATCACCCCTTTTTTAATTTTTGAAAATTCCCCTCCAGCTTCTTACAGCTGGAGAAATTGATAACTGGATAGTTTGTTCTTCCATCAAGGAACAGTACACTTTACTAATTTTTCCGGCACGTGGTATTTTCTGAAAACACCCTAAAACCACACCCGAATAATGATTTATAACTCCCGTTTCCTTCAAGTCATTCACAAACTCTAATGACGTTGTCACAACAGTAGACTACAGTGCTCCGGAACTAAAAGAACAAAAACCATAACTCAAACTCCCAGCACTCTCTAGCTTCTCTGCGTTTCTATCATGTGAATTCGTATGTTTTCTAGCGGTTTTTCTGAAAAATAAAACGAAATGGGGTTTCCCATAAACAACAAACGATTGTGTCGCTTCTTCTTTTTCATCATCATTCTTTCTTCCCATCCATTCAAATGATGATGCATCTCAAATTGTTCTCCGTGTTTCTTCTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTTGCGTTTATGTGTAACTA</pcr_primer_p1>
		<pcr_primer_p2>AGTAAAGTGTACTGTTCCTTGATG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TGTTTTGCGTTTATGTGTAACTAATAAATTTGGTTTTGAAAGCCTATGTCGTTTGGAAATCGGTGGCAAAATGGGGGAGAAATTGGGGCTGATGTGGGGCCTATGTGGGTATTATCCTGAGATGTTTTTAAATCTCCCAACATCACCCCTTTTTTAATTTTTGAAAATTCCCCTCCAGCTTCTTACAGCTGGAGAAATTGATAACTGGATAGTTTGTTCTTCCATCAAGGAACAGTACACTTTACT</canonical_amplicon>
		<polymorphic_amplicon>TGTTTTGCGTTTATGTGTAACTAATAAATTTGGTTTTGAAAGCCTATGTCGTTTGGAAATCGGTGGCAAAATGGGGGAGAAATTGGGGCTGATGTGGGGCCTATGTGGGKATTATCCTGAGATGTTTTTAAATCTCCCAACATCACCCCTTTTTTAATTTTTGAAAATTCCCCTCCAGCTTCTTACAGCTGGAGAAATTGATAACTGGATAGTTTGTTCTTCCATCAAGGAACAGTACACTTTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16174</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>214093</contig_pos>
        <strand>+</strand>
        <context>CCACACCCGA[A/C]TAATGATTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTTTCCGGCACGTGGTATTTTCTGAAAACACCCTAAAACCACACCCGA</left_flank>
        <right_flank>TAATGATTTATAACTCCCGTTTCCTTCAAGTCATTCACAAACTCTAATGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCACGGAGAGAAAAATCGAGAATGTAGGTGTCATGAAAGGTTGTTCCCCCTATAATCTCCATTTTCCAGCAAACTCAGCAAAAAACTGTACAGGATCTGACCGACTACTCCAACAACATATAATTTCTTTACTTTCAATTCCAGCTCCATCTTTTGATTTTTACTGACTGTTTGTTCTTCTAGAGTCTATTTTGAAAGACTGTTTTGCGTTTATGTGTAACTAATAAATTTGGTTTTGAAAGCCTATGTCGTTTGGAAATCGGTGGCAAAATGGGGGAGAAATTGGGGCTGATGTGGGGCCTATGTGGGTATTATCCTGAGATGTTTTTAAATCTCCCAACATCACCCCTTTTTTAATTTTTGAAAATTCCCCTCCAGCTTCTTACAGCTGGAGAAATTGATAACTGGATAGTTTGTTCTTCCATCAAGGAACAGTACACTTTACTAATTTTTCCGGCACGTGGTATTTTCTGAAAACACCCTAAAACCACACCCGAATAATGATTTATAACTCCCGTTTCCTTCAAGTCATTCACAAACTCTAATGACGTTGTCACAACAGTAGACTACAGTGCTCCGGAACTAAAAGAACAAAAACCATAACTCAAACTCCCAGCACTCTCTAGCTTCTCTGCGTTTCTATCATGTGAATTCGTATGTTTTCTAGCGGTTTTTCTGAAAAATAAAACGAAATGGGGTTTCCCATAAACAACAAACGATTGTGTCGCTTCTTCTTTTTCATCATCATTCTTTCTTCCCATCCATTCAAATGATGATGCATCTCAAATTGTTCTCCGTGTTTCTTCTTCTTTCTCTCTTACCGTTTCAATCTTCAGCTATCAAATGCTATGCAGGTAAGTTGCCACGTATTTCCGAAATGAATTATCGTTGGGGTCTCTGCTTTGATAAGAGGCGCAAAAAAGAGAAGACAAGTTATGATAAGCGATATTTTAGGTAGCCGCGGATTCATCAACGGAAAACTGGAGCAGAAATTCATC</canonical>
            <polymorphic>AATCACGGAGAGAAAAATCGAGAATGTAGGTGTCATGAAAGGTTGTTCCCCCTATAATCTCCATTTTCCAGCAAACTCAGCAAAAAACTGTACAGGATCTGACCGACTACTCCAACAACATATAATTTCTTTACTTTCAATTCCAGCTCCATCTTTTGATTTTTACTGACTGTTTGTTCTTCTAGAGTCTATTTTGAAAGACTGTTTTGCGTTTATGTGTAACTAATAAATTTGGTTTTGAAAGCCTATGTCGTTTGGAAATCGGTGGCAAAATGGGGGAGAAATTGGGGCTGATGTGGGGCCTATGTGGGTATTATCCTGAGATGTTTTTAAATCTCCCAACATCACCCCTTTTTTAATTTTTGAAAATTCCCCTCCAGCTTCTTACAGCTGGAGAAATTGATAACTGGATAGTTTGTTCTTCCATCAAGGAACAGTACACTTTACTAATTTTTCCGGCACGTGGTATTTTCTGAAAACACCCTAAAACCACACCCGAMTAATGATTTATAACTCCCGTTTCCTTCAAGTCATTCACAAACTCTAATGACGTTGTCACAACAGTAGACTACAGTGCTCCGGAACTAAAAGAACAAAAACCATAACTCAAACTCCCAGCACTCTCTAGCTTCTCTGCGTTTCTATCATGTGAATTCGTATGTTTTCTAGCGGTTTTTCTGAAAAATAAAACGAAATGGGGTTTCCCATAAACAACAAACGATTGTGTCGCTTCTTCTTTTTCATCATCATTCTTTCTTCCCATCCATTCAAATGATGATGCATCTCAAATTGTTCTCCGTGTTTCTTCTTCTTTCTCTCTTACCGTTTCAATCTTCAGCTATCAAATGCTATGCAGGTAAGTTGCCACGTATTTCCGAAATGAATTATCGTTGGGGTCTCTGCTTTGATAAGAGGCGCAAAAAAGAGAAGACAAGTTATGATAAGCGATATTTTAGGTAGCCGCGGATTCATCAACGGAAAACTGGAGCAGAAATTCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGGAGAAATTGATAACTGGATA</pcr_primer_p1>
		<pcr_primer_p2>AACGCAGAGAAGCTAGAGAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGGAGAAATTGATAACTGGATAGTTTGTTCTTCCATCAAGGAACAGTACACTTTACTAATTTTTCCGGCACGTGGTATTTTCTGAAAACACCCTAAAACCACACCCGAATAATGATTTATAACTCCCGTTTCCTTCAAGTCATTCACAAACTCTAATGACGTTGTCACAACAGTAGACTACAGTGCTCCGGAACTAAAAGAACAAAAACCATAACTCAAACTCCCAGCACTCTCTAGCTTCTCTGCGTT</canonical_amplicon>
		<polymorphic_amplicon>CTGGAGAAATTGATAACTGGATAGTTTGTTCTTCCATCAAGGAACAGTACACTTTACTAATTTTTCCGGCACGTGGTATTTTCTGAAAACACCCTAAAACCACACCCGAMTAATGATTTATAACTCCCGTTTCCTTCAAGTCATTCACAAACTCTAATGACGTTGTCACAACAGTAGACTACAGTGCTCCGGAACTAAAAGAACAAAAACCATAACTCAAACTCCCAGCACTCTCTAGCTTCTCTGCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16175</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>218163</contig_pos>
        <strand>+</strand>
        <context>TAGTGAGTTG[A/G]TCTTACAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCATCTGTCCATTTGGAGTCACTGGAAGCTTCTGCGAAATTAGTGAGTTG</left_flank>
        <right_flank>TCTTACAAAATAAAAATTAATTTGAATATTGTTAGTGTCCTGCCCAACGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACAATAACTACGCCCACACATTCAATGGATTCAGACAACGACCAGCAGTGTATTCCTCTTTTGCCACCACAACAGGCTTGACTGTTACAAGACTCAACTCTTACAACTCATCTATCATTCTCGGAGCAGTTGCTGATGCTGCAAAGTCCGCTTCTTGTGTCTTCAATTACCAACTCACAGCAGAATCATCATGCATTCCAGGACCATTCGTTCATAATGTTGTCGTCGCGGCCACTGACAGAAACAAGTATCGTGCCGTGCCAGGATACTGTTTCACTCCAGATACCCACTCGGCTCCTCTCTGGTCATGCATCAATAACGGTACCCGTAGCGGTGTGAGCAGTTGTAATTGCGCTACCAACTGGGATGGTCTTCATTGTGAAGTTCCGAAGTGTTTGAACGGCGGATACCCAGACAAGTTCCCCAACGGAGGAGGCCATGGAAACTGCATCTGTCCATTTGGAGTCACTGGAAGCTTCTGCGAAATTAGTGAGTTGGTCTTACAAAATAAAAATTAATTTGAATATTGTTAGTGTCCTGCCCAACGACATCTCCTGACACTTTTCAATCATACAACAGATCTTTTGCTCTCGTTGTTCAAAATTCGCTCTCTGCCAATCAAGCGATGCTCAGACTTAACGATGGACTCACAGCTATGCTCAACAAAGGACTATCCAATGATTTTGAAGATTACATTCTGACCACGTACAAGACCAGAGTTATTGGAGGACTACCAGTTCCGGATGTAACTTCTACCAAATTCAGCTCAGCGTCTGCTTTCGTGAATGCCACTACTGATGATGGAATCATGTGGTCATACTCTCCAAATGGTACCCAACCAGGATTGTTTGCCCTTGAGACCACACTGAGATCGATGGATTACGACAAGTCGTCTATTTTCTTTTTCACCGATTCCGAATCTTCGATGGTTGAGGGAACTTTGAACTTTACTGATATTGTGTGAGAACTTCAAAATCTGTGGTTATAGTTTTCAATGT</canonical>
            <polymorphic>TGACAATAACTACGCCCACACATTCAATGGATTCAGACAACGACCAGCAGTGTATTCCTCTTTTGCCACCACAACAGGCTTGACTGTTACAAGACTCAACTCTTACAACTCATCTATCATTCTCGGAGCAGTTGCTGATGCTGCAAAGTCCGCTTCTTGTGTCTTCAATTACCAACTCACAGCAGAATCATCATGCATTCCAGGACCATTCGTTCATAATGTTGTCGTCGCGGCCACTGACAGAAACAAGTATCGTGCCGTGCCAGGATACTGTTTCACTCCAGATACCCACTCGGCTCCTCTCTGGTCATGCATCAATAACGGTACCCGTAGCGGTGTGAGCAGTTGTAATTGCGCTACCAACTGGGATGGTCTTCATTGTGAAGTTCCGAAGTGTTTGAACGGCGGATACCCAGACAAGTTCCCCAACGGAGGAGGCCATGGAAACTGCATCTGTCCATTTGGAGTCACTGGAAGCTTCTGCGAAATTAGTGAGTTGRTCTTACAAAATAAAAATTAATTTGAATATTGTTAGTGTCCTGCCCAACGACATCTCCTGACACTTTTCAATCATACAACAGATCTTTTGCTCTCGTTGTTCAAAATTCGCTCTCTGCCAATCAAGCGATGCTCAGACTTAACGATGGACTCACAGCTATGCTCAACAAAGGACTATCCAATGATTTTGAAGATTACATTCTGACCACGTACAAGACCAGAGTTATTGGAGGACTACCAGTTCCGGATGTAACTTCTACCAAATTCAGCTCAGCGTCTGCTTTCGTGAATGCCACTACTGATGATGGAATCATGTGGTCATACTCTCCAAATGGTACCCAACCAGGATTGTTTGCCCTTGAGACCACACTGAGATCGATGGATTACGACAAGTCGTCTATTTTCTTTTTCACCGATTCCGAATCTTCGATGGTTGAGGGAACTTTGAACTTTACTGATATTGTGTGAGAACTTCAAAATCTGTGGTTATAGTTTTCAATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACTGCATCTGTCCATTT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAATCATTGGATAGTCCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAACTGCATCTGTCCATTTGGAGTCACTGGAAGCTTCTGCGAAATTAGTGAGTTGGTCTTACAAAATAAAAATTAATTTGAATATTGTTAGTGTCCTGCCCAACGACATCTCCTGACACTTTTCAATCATACAACAGATCTTTTGCTCTCGTTGTTCAAAATTCGCTCTCTGCCAATCAAGCGATGCTCAGACTTAACGATGGACTCACAGCTATGCTCAACAAAGGACTATCCAATGATTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GAAACTGCATCTGTCCATTTGGAGTCACTGGAAGCTTCTGCGAAATTAGTGAGTTGRTCTTACAAAATAAAAATTAATTTGAATATTGTTAGTGTCCTGCCCAACGACATCTCCTGACACTTTTCAATCATACAACAGATCTTTTGCTCTCGTTGTTCAAAATTCGCTCTCTGCCAATCAAGCGATGCTCAGACTTAACGATGGACTCACAGCTATGCTCAACAAAGGACTATCCAATGATTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16176</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>217905</contig_pos>
        <strand>+</strand>
        <context>GGCCACTGAC[A/G]GAAACAAGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATGCATTCCAGGACCATTCGTTCATAATGTTGTCGTCGCGGCCACTGAC</left_flank>
        <right_flank>GAAACAAGTATCGTGCCGTGCCAGGATACTGTTTCACTCCAGATACCCAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTCTCCGATTCTGCTACTCAAACCACCTTCGCCCTGATCACAGTTGAGAATGGATCTATCCCGAACGTTCAAGATAAGAATGGAAAGATGTTGGCTCCAGATGTTTCTGGAAAACGATTTGCGCTCTTCCGCGTCTATCAAAGTGTCACTGACTCCATCACAATTTCTGGAGATACTATCCCGGTTCACAGCACTCGAGTGTGGTTCCCATCTATGGACGACGTTCTCATTTCCTATTCTGATGATGATGCGGTTGACAATAACTACGCCCACACATTCAATGGATTCAGACAACGACCAGCAGTGTATTCCTCTTTTGCCACCACAACAGGCTTGACTGTTACAAGACTCAACTCTTACAACTCATCTATCATTCTCGGAGCAGTTGCTGATGCTGCAAAGTCCGCTTCTTGTGTCTTCAATTACCAACTCACAGCAGAATCATCATGCATTCCAGGACCATTCGTTCATAATGTTGTCGTCGCGGCCACTGACAGAAACAAGTATCGTGCCGTGCCAGGATACTGTTTCACTCCAGATACCCACTCGGCTCCTCTCTGGTCATGCATCAATAACGGTACCCGTAGCGGTGTGAGCAGTTGTAATTGCGCTACCAACTGGGATGGTCTTCATTGTGAAGTTCCGAAGTGTTTGAACGGCGGATACCCAGACAAGTTCCCCAACGGAGGAGGCCATGGAAACTGCATCTGTCCATTTGGAGTCACTGGAAGCTTCTGCGAAATTAGTGAGTTGGTCTTACAAAATAAAAATTAATTTGAATATTGTTAGTGTCCTGCCCAACGACATCTCCTGACACTTTTCAATCATACAACAGATCTTTTGCTCTCGTTGTTCAAAATTCGCTCTCTGCCAATCAAGCGATGCTCAGACTTAACGATGGACTCACAGCTATGCTCAACAAAGGACTATCCAATGATTTTGAAGATTACATTCTGACCACGTACAAGACCAGAGTTATTGGAGGACTACCAGTTC</canonical>
            <polymorphic>AATTTTCTCCGATTCTGCTACTCAAACCACCTTCGCCCTGATCACAGTTGAGAATGGATCTATCCCGAACGTTCAAGATAAGAATGGAAAGATGTTGGCTCCAGATGTTTCTGGAAAACGATTTGCGCTCTTCCGCGTCTATCAAAGTGTCACTGACTCCATCACAATTTCTGGAGATACTATCCCGGTTCACAGCACTCGAGTGTGGTTCCCATCTATGGACGACGTTCTCATTTCCTATTCTGATGATGATGCGGTTGACAATAACTACGCCCACACATTCAATGGATTCAGACAACGACCAGCAGTGTATTCCTCTTTTGCCACCACAACAGGCTTGACTGTTACAAGACTCAACTCTTACAACTCATCTATCATTCTCGGAGCAGTTGCTGATGCTGCAAAGTCCGCTTCTTGTGTCTTCAATTACCAACTCACAGCAGAATCATCATGCATTCCAGGACCATTCGTTCATAATGTTGTCGTCGCGGCCACTGACRGAAACAAGTATCGTGCCGTGCCAGGATACTGTTTCACTCCAGATACCCACTCGGCTCCTCTCTGGTCATGCATCAATAACGGTACCCGTAGCGGTGTGAGCAGTTGTAATTGCGCTACCAACTGGGATGGTCTTCATTGTGAAGTTCCGAAGTGTTTGAACGGCGGATACCCAGACAAGTTCCCCAACGGAGGAGGCCATGGAAACTGCATCTGTCCATTTGGAGTCACTGGAAGCTTCTGCGAAATTAGTGAGTTGGTCTTACAAAATAAAAATTAATTTGAATATTGTTAGTGTCCTGCCCAACGACATCTCCTGACACTTTTCAATCATACAACAGATCTTTTGCTCTCGTTGTTCAAAATTCGCTCTCTGCCAATCAAGCGATGCTCAGACTTAACGATGGACTCACAGCTATGCTCAACAAAGGACTATCCAATGATTTTGAAGATTACATTCTGACCACGTACAAGACCAGAGTTATTGGAGGACTACCAGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGGCTTGACTGTTACAAGAC</pcr_primer_p1>
		<pcr_primer_p2>GTTATTGATGCATGACCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAGGCTTGACTGTTACAAGACTCAACTCTTACAACTCATCTATCATTCTCGGAGCAGTTGCTGATGCTGCAAAGTCCGCTTCTTGTGTCTTCAATTACCAACTCACAGCAGAATCATCATGCATTCCAGGACCATTCGTTCATAATGTTGTCGTCGCGGCCACTGACAGAAACAAGTATCGTGCCGTGCCAGGATACTGTTTCACTCCAGATACCCACTCGGCTCCTCTCTGGTCATGCATCAATAAC</canonical_amplicon>
		<polymorphic_amplicon>ACAGGCTTGACTGTTACAAGACTCAACTCTTACAACTCATCTATCATTCTCGGAGCAGTTGCTGATGCTGCAAAGTCCGCTTCTTGTGTCTTCAATTACCAACTCACAGCAGAATCATCATGCATTCCAGGACCATTCGTTCATAATGTTGTCGTCGCGGCCACTGACRGAAACAAGTATCGTGCCGTGCCAGGATACTGTTTCACTCCAGATACCCACTCGGCTCCTCTCTGGTCATGCATCAATAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16177</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>217840</contig_pos>
        <strand>+</strand>
        <context>AATTACCAAC[A/T]CACAGCAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGCAGTTGCTGATGCTGCAAAGTCCGCTTCTTGTGTCTTCAATTACCAAC</left_flank>
        <right_flank>CACAGCAGAATCATCATGCATTCCAGGACCATTCGTTCATAATGTTGTCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACGCATTCATTGGCGGTCAGAACAGTTTTGTTCAGTACTACAACAGTGTCAGCAAAACTATCCCAATTTTCTCCGATTCTGCTACTCAAACCACCTTCGCCCTGATCACAGTTGAGAATGGATCTATCCCGAACGTTCAAGATAAGAATGGAAAGATGTTGGCTCCAGATGTTTCTGGAAAACGATTTGCGCTCTTCCGCGTCTATCAAAGTGTCACTGACTCCATCACAATTTCTGGAGATACTATCCCGGTTCACAGCACTCGAGTGTGGTTCCCATCTATGGACGACGTTCTCATTTCCTATTCTGATGATGATGCGGTTGACAATAACTACGCCCACACATTCAATGGATTCAGACAACGACCAGCAGTGTATTCCTCTTTTGCCACCACAACAGGCTTGACTGTTACAAGACTCAACTCTTACAACTCATCTATCATTCTCGGAGCAGTTGCTGATGCTGCAAAGTCCGCTTCTTGTGTCTTCAATTACCAACTCACAGCAGAATCATCATGCATTCCAGGACCATTCGTTCATAATGTTGTCGTCGCGGCCACTGACAGAAACAAGTATCGTGCCGTGCCAGGATACTGTTTCACTCCAGATACCCACTCGGCTCCTCTCTGGTCATGCATCAATAACGGTACCCGTAGCGGTGTGAGCAGTTGTAATTGCGCTACCAACTGGGATGGTCTTCATTGTGAAGTTCCGAAGTGTTTGAACGGCGGATACCCAGACAAGTTCCCCAACGGAGGAGGCCATGGAAACTGCATCTGTCCATTTGGAGTCACTGGAAGCTTCTGCGAAATTAGTGAGTTGGTCTTACAAAATAAAAATTAATTTGAATATTGTTAGTGTCCTGCCCAACGACATCTCCTGACACTTTTCAATCATACAACAGATCTTTTGCTCTCGTTGTTCAAAATTCGCTCTCTGCCAATCAAGCGATGCTCAGACTTAACGATGGACTCACAGCTATGCTCAACAAAGGACTATC</canonical>
            <polymorphic>TACGCATTCATTGGCGGTCAGAACAGTTTTGTTCAGTACTACAACAGTGTCAGCAAAACTATCCCAATTTTCTCCGATTCTGCTACTCAAACCACCTTCGCCCTGATCACAGTTGAGAATGGATCTATCCCGAACGTTCAAGATAAGAATGGAAAGATGTTGGCTCCAGATGTTTCTGGAAAACGATTTGCGCTCTTCCGCGTCTATCAAAGTGTCACTGACTCCATCACAATTTCTGGAGATACTATCCCGGTTCACAGCACTCGAGTGTGGTTCCCATCTATGGACGACGTTCTCATTTCCTATTCTGATGATGATGCGGTTGACAATAACTACGCCCACACATTCAATGGATTCAGACAACGACCAGCAGTGTATTCCTCTTTTGCCACCACAACAGGCTTGACTGTTACAAGACTCAACTCTTACAACTCATCTATCATTCTCGGAGCAGTTGCTGATGCTGCAAAGTCCGCTTCTTGTGTCTTCAATTACCAACWCACAGCAGAATCATCATGCATTCCAGGACCATTCGTTCATAATGTTGTCGTCGCGGCCACTGACAGAAACAAGTATCGTGCCGTGCCAGGATACTGTTTCACTCCAGATACCCACTCGGCTCCTCTCTGGTCATGCATCAATAACGGTACCCGTAGCGGTGTGAGCAGTTGTAATTGCGCTACCAACTGGGATGGTCTTCATTGTGAAGTTCCGAAGTGTTTGAACGGCGGATACCCAGACAAGTTCCCCAACGGAGGAGGCCATGGAAACTGCATCTGTCCATTTGGAGTCACTGGAAGCTTCTGCGAAATTAGTGAGTTGGTCTTACAAAATAAAAATTAATTTGAATATTGTTAGTGTCCTGCCCAACGACATCTCCTGACACTTTTCAATCATACAACAGATCTTTTGCTCTCGTTGTTCAAAATTCGCTCTCTGCCAATCAAGCGATGCTCAGACTTAACGATGGACTCACAGCTATGCTCAACAAAGGACTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCAGCAGTGTATTCCTCTTT</pcr_primer_p1>
		<pcr_primer_p2>GGGTATCTGGAGTGAAACAGTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACCAGCAGTGTATTCCTCTTTTGCCACCACAACAGGCTTGACTGTTACAAGACTCAACTCTTACAACTCATCTATCATTCTCGGAGCAGTTGCTGATGCTGCAAAGTCCGCTTCTTGTGTCTTCAATTACCAACTCACAGCAGAATCATCATGCATTCCAGGACCATTCGTTCATAATGTTGTCGTCGCGGCCACTGACAGAAACAAGTATCGTGCCGTGCCAGGATACTGTTTCACTCCAGATACCC</canonical_amplicon>
		<polymorphic_amplicon>ACCAGCAGTGTATTCCTCTTTTGCCACCACAACAGGCTTGACTGTTACAAGACTCAACTCTTACAACTCATCTATCATTCTCGGAGCAGTTGCTGATGCTGCAAAGTCCGCTTCTTGTGTCTTCAATTACCAACWCACAGCAGAATCATCATGCATTCCAGGACCATTCGTTCATAATGTTGTCGTCGCGGCCACTGACAGAAACAAGTATCGTGCCGTGCCAGGATACTGTTTCACTCCAGATACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16178</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>217800</contig_pos>
        <strand>+</strand>
        <context>AGCAGTTGCT[G/T]ATGCTGCAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTACAAGACTCAACTCTTACAACTCATCTATCATTCTCGGAGCAGTTGCT</left_flank>
        <right_flank>ATGCTGCAAAGTCCGCTTCTTGTGTCTTCAATTACCAACTCACAGCAGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACAAGTCTGAAGTCGTGGGAGTTATCAAGGAACTTCTATACGCATTCATTGGCGGTCAGAACAGTTTTGTTCAGTACTACAACAGTGTCAGCAAAACTATCCCAATTTTCTCCGATTCTGCTACTCAAACCACCTTCGCCCTGATCACAGTTGAGAATGGATCTATCCCGAACGTTCAAGATAAGAATGGAAAGATGTTGGCTCCAGATGTTTCTGGAAAACGATTTGCGCTCTTCCGCGTCTATCAAAGTGTCACTGACTCCATCACAATTTCTGGAGATACTATCCCGGTTCACAGCACTCGAGTGTGGTTCCCATCTATGGACGACGTTCTCATTTCCTATTCTGATGATGATGCGGTTGACAATAACTACGCCCACACATTCAATGGATTCAGACAACGACCAGCAGTGTATTCCTCTTTTGCCACCACAACAGGCTTGACTGTTACAAGACTCAACTCTTACAACTCATCTATCATTCTCGGAGCAGTTGCTGATGCTGCAAAGTCCGCTTCTTGTGTCTTCAATTACCAACTCACAGCAGAATCATCATGCATTCCAGGACCATTCGTTCATAATGTTGTCGTCGCGGCCACTGACAGAAACAAGTATCGTGCCGTGCCAGGATACTGTTTCACTCCAGATACCCACTCGGCTCCTCTCTGGTCATGCATCAATAACGGTACCCGTAGCGGTGTGAGCAGTTGTAATTGCGCTACCAACTGGGATGGTCTTCATTGTGAAGTTCCGAAGTGTTTGAACGGCGGATACCCAGACAAGTTCCCCAACGGAGGAGGCCATGGAAACTGCATCTGTCCATTTGGAGTCACTGGAAGCTTCTGCGAAATTAGTGAGTTGGTCTTACAAAATAAAAATTAATTTGAATATTGTTAGTGTCCTGCCCAACGACATCTCCTGACACTTTTCAATCATACAACAGATCTTTTGCTCTCGTTGTTCAAAATTCGCTCTCTGCCAATCAAGCGATGCTCAGAC</canonical>
            <polymorphic>TGACAAGTCTGAAGTCGTGGGAGTTATCAAGGAACTTCTATACGCATTCATTGGCGGTCAGAACAGTTTTGTTCAGTACTACAACAGTGTCAGCAAAACTATCCCAATTTTCTCCGATTCTGCTACTCAAACCACCTTCGCCCTGATCACAGTTGAGAATGGATCTATCCCGAACGTTCAAGATAAGAATGGAAAGATGTTGGCTCCAGATGTTTCTGGAAAACGATTTGCGCTCTTCCGCGTCTATCAAAGTGTCACTGACTCCATCACAATTTCTGGAGATACTATCCCGGTTCACAGCACTCGAGTGTGGTTCCCATCTATGGACGACGTTCTCATTTCCTATTCTGATGATGATGCGGTTGACAATAACTACGCCCACACATTCAATGGATTCAGACAACGACCAGCAGTGTATTCCTCTTTTGCCACCACAACAGGCTTGACTGTTACAAGACTCAACTCTTACAACTCATCTATCATTCTCGGAGCAGTTGCTKATGCTGCAAAGTCCGCTTCTTGTGTCTTCAATTACCAACTCACAGCAGAATCATCATGCATTCCAGGACCATTCGTTCATAATGTTGTCGTCGCGGCCACTGACAGAAACAAGTATCGTGCCGTGCCAGGATACTGTTTCACTCCAGATACCCACTCGGCTCCTCTCTGGTCATGCATCAATAACGGTACCCGTAGCGGTGTGAGCAGTTGTAATTGCGCTACCAACTGGGATGGTCTTCATTGTGAAGTTCCGAAGTGTTTGAACGGCGGATACCCAGACAAGTTCCCCAACGGAGGAGGCCATGGAAACTGCATCTGTCCATTTGGAGTCACTGGAAGCTTCTGCGAAATTAGTGAGTTGGTCTTACAAAATAAAAATTAATTTGAATATTGTTAGTGTCCTGCCCAACGACATCTCCTGACACTTTTCAATCATACAACAGATCTTTTGCTCTCGTTGTTCAAAATTCGCTCTCTGCCAATCAAGCGATGCTCAGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAGNNNCTG</site>
                <isoschizomers>
                    <enzyme>AlwNI</enzyme>
                    <enzyme>CaiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAGCAGTGTATTCCTCTTT</pcr_primer_p1>
		<pcr_primer_p2>GGGTATCTGGAGTGAAACAGTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACCAGCAGTGTATTCCTCTTTTGCCACCACAACAGGCTTGACTGTTACAAGACTCAACTCTTACAACTCATCTATCATTCTCGGAGCAGTTGCTGATGCTGCAAAGTCCGCTTCTTGTGTCTTCAATTACCAACTCACAGCAGAATCATCATGCATTCCAGGACCATTCGTTCATAATGTTGTCGTCGCGGCCACTGACAGAAACAAGTATCGTGCCGTGCCAGGATACTGTTTCACTCCAGATACCC</canonical_amplicon>
		<polymorphic_amplicon>ACCAGCAGTGTATTCCTCTTTTGCCACCACAACAGGCTTGACTGTTACAAGACTCAACTCTTACAACTCATCTATCATTCTCGGAGCAGTTGCTKATGCTGCAAAGTCCGCTTCTTGTGTCTTCAATTACCAACTCACAGCAGAATCATCATGCATTCCAGGACCATTCGTTCATAATGTTGTCGTCGCGGCCACTGACAGAAACAAGTATCGTGCCGTGCCAGGATACTGTTTCACTCCAGATACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16179</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>312841</contig_pos>
        <strand>+</strand>
        <context>TTTCTATCTA[C/G]AACGGGTCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATGGAAAAAATGATCGACTTGCCCGTTTGCGTTACCAAATTTCTATCTA</left_flank>
        <right_flank>AACGGGTCCAATCGAATGCGATGTGCTTCAGGAGCACGTCGAATGCTATA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGGGGTTTGGGTGGGCTTCTATAAGAAAAAATACAGCTTTCAGCTTTGAGCCACTTTATCTCGGTTTTTGTAAAAGATATGAAAAAGTGGTCAACTGATGAAATATTTTTGATATTATGATAAACATTTTATCAATTGATAAAATTTTCATATCTTCGATAGGGATTGAGATAAATTGGCTCAAAGTGGACATGGACTAAAACTTAAAAAGGACAAGCTTCCGCTTTGTAGTAGACGACGTTTTTTCGTCAAAGTTTTTCTAAAATAATAAACCAAACTTATTTATCCTATAAATTAAAGACTACCCTTTCTAAAGACTATCATTTCAATATTCCAGGATTGTCTCTATGCGATCGAATGCCGTAGTTTAAAACTCAACGACTCCCTCCCCGACCGATGCGCCATCTATCAATTTTTCGAGACGGATTTCAAAAAGTGTCGTGAGAGAATGGAAAAAATGATCGACTTGCCCGTTTGCGTTACCAAATTTCTATCTACAACGGGTCCAATCGAATGCGATGTGCTTCAGGAGCACGTCGAATGCTATAAAGATCATGTCAGTTTGATATGCGATGACGAGAGCTCGCTTTTTCATTTCTGGTTGCGCAGACATATTGACGATTACGCCCAGATTATTCAGTGTCAGTTGGAGTACTAATTTGTGGTGTCTTTTTTGGTGTGATTATTTTCAAAATTCCCTGTCATTCTTTTATTTCTTGTCGTCAGATCTCAATCACATCCCACTTTTTTTATTCAAGCGAACTTTTTTCAAATAAAAATTAATGAATCTTTAATAAATTAAACACTCATGAAGAAGCATGACGTCTTCTACAAACTCTTCGACCATCAGATCGGATCCACAGTTTTCAGTTATCTCGGCTGTCAGACATTCTCGATTTTTTTTAAACATCTCACACATTTCAGAGTTTTCCGCTTCCATGGTGCTCATGAGTGGAAGAAGGCATGGTGCGAAACCCAAGTTGAAACGCATTTGGAGC</canonical>
            <polymorphic>GGTGGGGTTTGGGTGGGCTTCTATAAGAAAAAATACAGCTTTCAGCTTTGAGCCACTTTATCTCGGTTTTTGTAAAAGATATGAAAAAGTGGTCAACTGATGAAATATTTTTGATATTATGATAAACATTTTATCAATTGATAAAATTTTCATATCTTCGATAGGGATTGAGATAAATTGGCTCAAAGTGGACATGGACTAAAACTTAAAAAGGACAAGCTTCCGCTTTGTAGTAGACGACGTTTTTTCGTCAAAGTTTTTCTAAAATAATAAACCAAACTTATTTATCCTATAAATTAAAGACTACCCTTTCTAAAGACTATCATTTCAATATTCCAGGATTGTCTCTATGCGATCGAATGCCGTAGTTTAAAACTCAACGACTCCCTCCCCGACCGATGCGCCATCTATCAATTTTTCGAGACGGATTTCAAAAAGTGTCGTGAGAGAATGGAAAAAATGATCGACTTGCCCGTTTGCGTTACCAAATTTCTATCTASAACGGGTCCAATCGAATGCGATGTGCTTCAGGAGCACGTCGAATGCTATAAAGATCATGTCAGTTTGATATGCGATGACGAGAGCTCGCTTTTTCATTTCTGGTTGCGCAGACATATTGACGATTACGCCCAGATTATTCAGTGTCAGTTGGAGTACTAATTTGTGGTGTCTTTTTTGGTGTGATTATTTTCAAAATTCCCTGTCATTCTTTTATTTCTTGTCGTCAGATCTCAATCACATCCCACTTTTTTTATTCAAGCGAACTTTTTTCAAATAAAAATTAATGAATCTTTAATAAATTAAACACTCATGAAGAAGCATGACGTCTTCTACAAACTCTTCGACCATCAGATCGGATCCACAGTTTTCAGTTATCTCGGCTGTCAGACATTCTCGATTTTTTTTAAACATCTCACACATTTCAGAGTTTTCCGCTTCCATGGTGCTCATGAGTGGAAGAAGGCATGGTGCGAAACCCAAGTTGAAACGCATTTGGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATCTATCAATTTTTCGAGAC</pcr_primer_p1>
		<pcr_primer_p2>CTCCAACTGACACTGAATAATCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCATCTATCAATTTTTCGAGACGGATTTCAAAAAGTGTCGTGAGAGAATGGAAAAAATGATCGACTTGCCCGTTTGCGTTACCAAATTTCTATCTACAACGGGTCCAATCGAATGCGATGTGCTTCAGGAGCACGTCGAATGCTATAAAGATCATGTCAGTTTGATATGCGATGACGAGAGCTCGCTTTTTCATTTCTGGTTGCGCAGACATATTGACGATTACGCCCAGATTATTCAGTGTCAGTTGGAG</canonical_amplicon>
		<polymorphic_amplicon>CCATCTATCAATTTTTCGAGACGGATTTCAAAAAGTGTCGTGAGAGAATGGAAAAAATGATCGACTTGCCCGTTTGCGTTACCAAATTTCTATCTASAACGGGTCCAATCGAATGCGATGTGCTTCAGGAGCACGTCGAATGCTATAAAGATCATGTCAGTTTGATATGCGATGACGAGAGCTCGCTTTTTCATTTCTGGTTGCGCAGACATATTGACGATTACGCCCAGATTATTCAGTGTCAGTTGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16180</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>312896</contig_pos>
        <strand>+</strand>
        <context>GCTATAAAGA[G/T]CATGTCAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGTCCAATCGAATGCGATGTGCTTCAGGAGCACGTCGAATGCTATAAAGA</left_flank>
        <right_flank>CATGTCAGTTTGATATGCGATGACGAGAGCTCGCTTTTTCATTTCTGGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTATCTCGGTTTTTGTAAAAGATATGAAAAAGTGGTCAACTGATGAAATATTTTTGATATTATGATAAACATTTTATCAATTGATAAAATTTTCATATCTTCGATAGGGATTGAGATAAATTGGCTCAAAGTGGACATGGACTAAAACTTAAAAAGGACAAGCTTCCGCTTTGTAGTAGACGACGTTTTTTCGTCAAAGTTTTTCTAAAATAATAAACCAAACTTATTTATCCTATAAATTAAAGACTACCCTTTCTAAAGACTATCATTTCAATATTCCAGGATTGTCTCTATGCGATCGAATGCCGTAGTTTAAAACTCAACGACTCCCTCCCCGACCGATGCGCCATCTATCAATTTTTCGAGACGGATTTCAAAAAGTGTCGTGAGAGAATGGAAAAAATGATCGACTTGCCCGTTTGCGTTACCAAATTTCTATCTACAACGGGTCCAATCGAATGCGATGTGCTTCAGGAGCACGTCGAATGCTATAAAGATCATGTCAGTTTGATATGCGATGACGAGAGCTCGCTTTTTCATTTCTGGTTGCGCAGACATATTGACGATTACGCCCAGATTATTCAGTGTCAGTTGGAGTACTAATTTGTGGTGTCTTTTTTGGTGTGATTATTTTCAAAATTCCCTGTCATTCTTTTATTTCTTGTCGTCAGATCTCAATCACATCCCACTTTTTTTATTCAAGCGAACTTTTTTCAAATAAAAATTAATGAATCTTTAATAAATTAAACACTCATGAAGAAGCATGACGTCTTCTACAAACTCTTCGACCATCAGATCGGATCCACAGTTTTCAGTTATCTCGGCTGTCAGACATTCTCGATTTTTTTTAAACATCTCACACATTTCAGAGTTTTCCGCTTCCATGGTGCTCATGAGTGGAAGAAGGCATGGTGCGAAACCCAAGTTGAAACGCATTTGGAGCTGAAAAAATCCATTTCCTTTGAGTTCAATTATCTCGGTTCATGGGAGAGATAGCA</canonical>
            <polymorphic>CTTTATCTCGGTTTTTGTAAAAGATATGAAAAAGTGGTCAACTGATGAAATATTTTTGATATTATGATAAACATTTTATCAATTGATAAAATTTTCATATCTTCGATAGGGATTGAGATAAATTGGCTCAAAGTGGACATGGACTAAAACTTAAAAAGGACAAGCTTCCGCTTTGTAGTAGACGACGTTTTTTCGTCAAAGTTTTTCTAAAATAATAAACCAAACTTATTTATCCTATAAATTAAAGACTACCCTTTCTAAAGACTATCATTTCAATATTCCAGGATTGTCTCTATGCGATCGAATGCCGTAGTTTAAAACTCAACGACTCCCTCCCCGACCGATGCGCCATCTATCAATTTTTCGAGACGGATTTCAAAAAGTGTCGTGAGAGAATGGAAAAAATGATCGACTTGCCCGTTTGCGTTACCAAATTTCTATCTACAACGGGTCCAATCGAATGCGATGTGCTTCAGGAGCACGTCGAATGCTATAAAGAKCATGTCAGTTTGATATGCGATGACGAGAGCTCGCTTTTTCATTTCTGGTTGCGCAGACATATTGACGATTACGCCCAGATTATTCAGTGTCAGTTGGAGTACTAATTTGTGGTGTCTTTTTTGGTGTGATTATTTTCAAAATTCCCTGTCATTCTTTTATTTCTTGTCGTCAGATCTCAATCACATCCCACTTTTTTTATTCAAGCGAACTTTTTTCAAATAAAAATTAATGAATCTTTAATAAATTAAACACTCATGAAGAAGCATGACGTCTTCTACAAACTCTTCGACCATCAGATCGGATCCACAGTTTTCAGTTATCTCGGCTGTCAGACATTCTCGATTTTTTTTAAACATCTCACACATTTCAGAGTTTTCCGCTTCCATGGTGCTCATGAGTGGAAGAAGGCATGGTGCGAAACCCAAGTTGAAACGCATTTGGAGCTGAAAAAATCCATTTCCTTTGAGTTCAATTATCTCGGTTCATGGGAGAGATAGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>298 199 175 124 108 91 5</canonical_bands>
                <polymorphic_bands>298 266 199 124 108 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGCGTTACCAAATTTCTATCTA</pcr_primer_p1>
		<pcr_primer_p2>GACGACAAGAAATAAAAGAATGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGCGTTACCAAATTTCTATCTACAACGGGTCCAATCGAATGCGATGTGCTTCAGGAGCACGTCGAATGCTATAAAGATCATGTCAGTTTGATATGCGATGACGAGAGCTCGCTTTTTCATTTCTGGTTGCGCAGACATATTGACGATTACGCCCAGATTATTCAGTGTCAGTTGGAGTACTAATTTGTGGTGTCTTTTTTGGTGTGATTATTTTCAAAATTCCCTGTCATTCTTTTATTTCTTGTCGTC</canonical_amplicon>
		<polymorphic_amplicon>TTGCGTTACCAAATTTCTATCTACAACGGGTCCAATCGAATGCGATGTGCTTCAGGAGCACGTCGAATGCTATAAAGAKCATGTCAGTTTGATATGCGATGACGAGAGCTCGCTTTTTCATTTCTGGTTGCGCAGACATATTGACGATTACGCCCAGATTATTCAGTGTCAGTTGGAGTACTAATTTGTGGTGTCTTTTTTGGTGTGATTATTTTCAAAATTCCCTGTCATTCTTTTATTTCTTGTCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16181</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>313141</contig_pos>
        <strand>+</strand>
        <context>TCTTTAATAA[A/G]TTAAACACTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTATTCAAGCGAACTTTTTTCAAATAAAAATTAATGAATCTTTAATAA</left_flank>
        <right_flank>TTAAACACTCATGAAGAAGCATGACGTCTTCTACAAACTCTTCGACCATC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGACTACCCTTTCTAAAGACTATCATTTCAATATTCCAGGATTGTCTCTATGCGATCGAATGCCGTAGTTTAAAACTCAACGACTCCCTCCCCGACCGATGCGCCATCTATCAATTTTTCGAGACGGATTTCAAAAAGTGTCGTGAGAGAATGGAAAAAATGATCGACTTGCCCGTTTGCGTTACCAAATTTCTATCTACAACGGGTCCAATCGAATGCGATGTGCTTCAGGAGCACGTCGAATGCTATAAAGATCATGTCAGTTTGATATGCGATGACGAGAGCTCGCTTTTTCATTTCTGGTTGCGCAGACATATTGACGATTACGCCCAGATTATTCAGTGTCAGTTGGAGTACTAATTTGTGGTGTCTTTTTTGGTGTGATTATTTTCAAAATTCCCTGTCATTCTTTTATTTCTTGTCGTCAGATCTCAATCACATCCCACTTTTTTTATTCAAGCGAACTTTTTTCAAATAAAAATTAATGAATCTTTAATAAATTAAACACTCATGAAGAAGCATGACGTCTTCTACAAACTCTTCGACCATCAGATCGGATCCACAGTTTTCAGTTATCTCGGCTGTCAGACATTCTCGATTTTTTTTAAACATCTCACACATTTCAGAGTTTTCCGCTTCCATGGTGCTCATGAGTGGAAGAAGGCATGGTGCGAAACCCAAGTTGAAACGCATTTGGAGCTGAAAAAATCCATTTCCTTTGAGTTCAATTATCTCGGTTCATGGGAGAGATAGCAAAGTTTGGTTGATAAAATTTTGATATCTTTTGATACAATTTTGATATCTTTTATAGGAACCGAGATAATTGAGTCCAAAGTGCCCATATATGTAGGGTGGGATTCCATAGAGCATTTTAATGAAGTTTTGGAAAATATGGAAATTTCAGGAAACTTCTAACATACCTTTTTCAAACAACCATTGTACTTGTTGACAGCTTTCTCAAAAACCGCACACGATGTTTTCACAAACTTGTACTCCATGG</canonical>
            <polymorphic>AGACTACCCTTTCTAAAGACTATCATTTCAATATTCCAGGATTGTCTCTATGCGATCGAATGCCGTAGTTTAAAACTCAACGACTCCCTCCCCGACCGATGCGCCATCTATCAATTTTTCGAGACGGATTTCAAAAAGTGTCGTGAGAGAATGGAAAAAATGATCGACTTGCCCGTTTGCGTTACCAAATTTCTATCTACAACGGGTCCAATCGAATGCGATGTGCTTCAGGAGCACGTCGAATGCTATAAAGATCATGTCAGTTTGATATGCGATGACGAGAGCTCGCTTTTTCATTTCTGGTTGCGCAGACATATTGACGATTACGCCCAGATTATTCAGTGTCAGTTGGAGTACTAATTTGTGGTGTCTTTTTTGGTGTGATTATTTTCAAAATTCCCTGTCATTCTTTTATTTCTTGTCGTCAGATCTCAATCACATCCCACTTTTTTTATTCAAGCGAACTTTTTTCAAATAAAAATTAATGAATCTTTAATAARTTAAACACTCATGAAGAAGCATGACGTCTTCTACAAACTCTTCGACCATCAGATCGGATCCACAGTTTTCAGTTATCTCGGCTGTCAGACATTCTCGATTTTTTTTAAACATCTCACACATTTCAGAGTTTTCCGCTTCCATGGTGCTCATGAGTGGAAGAAGGCATGGTGCGAAACCCAAGTTGAAACGCATTTGGAGCTGAAAAAATCCATTTCCTTTGAGTTCAATTATCTCGGTTCATGGGAGAGATAGCAAAGTTTGGTTGATAAAATTTTGATATCTTTTGATACAATTTTGATATCTTTTATAGGAACCGAGATAATTGAGTCCAAAGTGCCCATATATGTAGGGTGGGATTCCATAGAGCATTTTAATGAAGTTTTGGAAAATATGGAAATTTCAGGAAACTTCTAACATACCTTTTTCAAACAACCATTGTACTTGTTGACAGCTTTCTCAAAAACCGCACACGATGTTTTCACAAACTTGTACTCCATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>228 171 112 104 85 75 75 44 36 30 21 19</canonical_bands>
                <polymorphic_bands>247 171 112 104 85 75 75 44 36 30 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTATTCAGTGTCAGTTGGAGT</pcr_primer_p1>
		<pcr_primer_p2>CCGAGATAACTGAAAACTGTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATTATTCAGTGTCAGTTGGAGTACTAATTTGTGGTGTCTTTTTTGGTGTGATTATTTTCAAAATTCCCTGTCATTCTTTTATTTCTTGTCGTCAGATCTCAATCACATCCCACTTTTTTTATTCAAGCGAACTTTTTTCAAATAAAAATTAATGAATCTTTAATAAATTAAACACTCATGAAGAAGCATGACGTCTTCTACAAACTCTTCGACCATCAGATCGGATCCACAGTTTTCAGTTATCTCGG</canonical_amplicon>
		<polymorphic_amplicon>GATTATTCAGTGTCAGTTGGAGTACTAATTTGTGGTGTCTTTTTTGGTGTGATTATTTTCAAAATTCCCTGTCATTCTTTTATTTCTTGTCGTCAGATCTCAATCACATCCCACTTTTTTTATTCAAGCGAACTTTTTTCAAATAAAAATTAATGAATCTTTAATAARTTAAACACTCATGAAGAAGCATGACGTCTTCTACAAACTCTTCGACCATCAGATCGGATCCACAGTTTTCAGTTATCTCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16182</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>313254</contig_pos>
        <strand></strand>
        <context>TTTTAAACAT[C/T]TCACACATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGTTTTCAGTTATCTCGGCTGTCAGACATTCTCGATTTTTTTTAAACAT</left_flank>
        <right_flank>TCACACATTTCAGAGTTTTCCGCTTCCATGGTGCTCATGAGTGGAAGAAG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTCGAGACGGATTTCAAAAAGTGTCGTGAGAGAATGGAAAAAATGATCGACTTGCCCGTTTGCGTTACCAAATTTCTATCTACAACGGGTCCAATCGAATGCGATGTGCTTCAGGAGCACGTCGAATGCTATAAAGATCATGTCAGTTTGATATGCGATGACGAGAGCTCGCTTTTTCATTTCTGGTTGCGCAGACATATTGACGATTACGCCCAGATTATTCAGTGTCAGTTGGAGTACTAATTTGTGGTGTCTTTTTTGGTGTGATTATTTTCAAAATTCCCTGTCATTCTTTTATTTCTTGTCGTCAGATCTCAATCACATCCCACTTTTTTTATTCAAGCGAACTTTTTTCAAATAAAAATTAATGAATCTTTAATAAATTAAACACTCATGAAGAAGCATGACGTCTTCTACAAACTCTTCGACCATCAGATCGGATCCACAGTTTTCAGTTATCTCGGCTGTCAGACATTCTCGATTTTTTTTAAACATCTCACACATTTCAGAGTTTTCCGCTTCCATGGTGCTCATGAGTGGAAGAAGGCATGGTGCGAAACCCAAGTTGAAACGCATTTGGAGCTGAAAAAATCCATTTCCTTTGAGTTCAATTATCTCGGTTCATGGGAGAGATAGCAAAGTTTGGTTGATAAAATTTTGATATCTTTTGATACAATTTTGATATCTTTTATAGGAACCGAGATAATTGAGTCCAAAGTGCCCATATATGTAGGGTGGGATTCCATAGAGCATTTTAATGAAGTTTTGGAAAATATGGAAATTTCAGGAAACTTCTAACATACCTTTTTCAAACAACCATTGTACTTGTTGACAGCTTTCTCAAAAACCGCACACGATGTTTTCACAAACTTGTACTCCATGGTTATCGTTTTACATTTGATTGGGGTGATACATTCCTGAAATCACTTTTCATGAACGTTTAGAGTTTTTCACTAACCAATACAGTGGTGCAGGTAGCTGAAATATTCTGGAAGC</canonical>
            <polymorphic>ATTTTTCGAGACGGATTTCAAAAAGTGTCGTGAGAGAATGGAAAAAATGATCGACTTGCCCGTTTGCGTTACCAAATTTCTATCTACAACGGGTCCAATCGAATGCGATGTGCTTCAGGAGCACGTCGAATGCTATAAAGATCATGTCAGTTTGATATGCGATGACGAGAGCTCGCTTTTTCATTTCTGGTTGCGCAGACATATTGACGATTACGCCCAGATTATTCAGTGTCAGTTGGAGTACTAATTTGTGGTGTCTTTTTTGGTGTGATTATTTTCAAAATTCCCTGTCATTCTTTTATTTCTTGTCGTCAGATCTCAATCACATCCCACTTTTTTTATTCAAGCGAACTTTTTTCAAATAAAAATTAATGAATCTTTAATAAATTAAACACTCATGAAGAAGCATGACGTCTTCTACAAACTCTTCGACCATCAGATCGGATCCACAGTTTTCAGTTATCTCGGCTGTCAGACATTCTCGATTTTTTTTAAACATYTCACACATTTCAGAGTTTTCCGCTTCCATGGTGCTCATGAGTGGAAGAAGGCATGGTGCGAAACCCAAGTTGAAACGCATTTGGAGCTGAAAAAATCCATTTCCTTTGAGTTCAATTATCTCGGTTCATGGGAGAGATAGCAAAGTTTGGTTGATAAAATTTTGATATCTTTTGATACAATTTTGATATCTTTTATAGGAACCGAGATAATTGAGTCCAAAGTGCCCATATATGTAGGGTGGGATTCCATAGAGCATTTTAATGAAGTTTTGGAAAATATGGAAATTTCAGGAAACTTCTAACATACCTTTTTCAAACAACCATTGTACTTGTTGACAGCTTTCTCAAAAACCGCACACGATGTTTTCACAAACTTGTACTCCATGGTTATCGTTTTACATTTGATTGGGGTGATACATTCCTGAAATCACTTTTCATGAACGTTTAGAGTTTTTCACTAACCAATACAGTGGTGCAGGTAGCTGAAATATTCTGGAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCCACAGTTTTCAGTTATCTC</pcr_primer_p1>
		<pcr_primer_p2>TCATTAAAATGCTCTATGGAATC</pcr_primer_p2>
		<pcr_amplicon_size>322</pcr_amplicon_size>
		<canonical_amplicon>GATCCACAGTTTTCAGTTATCTCGGCTGTCAGACATTCTCGATTTTTTTTAAACATCTCACACATTTCAGAGTTTTCCGCTTCCATGGTGCTCATGAGTGGAAGAAGGCATGGTGCGAAACCCAAGTTGAAACGCATTTGGAGCTGAAAAAATCCATTTCCTTTGAGTTCAATTATCTCGGTTCATGGGAGAGATAGCAAAGTTTGGTTGATAAAATTTTGATATCTTTTGATACAATTTTGATATCTTTTATAGGAACCGAGATAATTGAGTCCAAAGTGCCCATATATGTAGGGTGGGATTCCATAGAGCATTTTAATGA</canonical_amplicon>
		<polymorphic_amplicon>GATCCACAGTTTTCAGTTATCTCGGCTGTCAGACATTCTCGATTTTTTTTAAACATYTCACACATTTCAGAGTTTTCCGCTTCCATGGTGCTCATGAGTGGAAGAAGGCATGGTGCGAAACCCAAGTTGAAACGCATTTGGAGCTGAAAAAATCCATTTCCTTTGAGTTCAATTATCTCGGTTCATGGGAGAGATAGCAAAGTTTGGTTGATAAAATTTTGATATCTTTTGATACAATTTTGATATCTTTTATAGGAACCGAGATAATTGAGTCCAAAGTGCCCATATATGTAGGGTGGGATTCCATAGAGCATTTTAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16183</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>85773</contig_pos>
        <strand>+</strand>
        <context>AGCCCAAAAG[C/G]AAGTGAGTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GACCGGAAATGGGCATGAAGAAGATGACCTTCTTCTCTGGAGCCCAAAAG</left_flank>
        <right_flank>AAGTGAGTATTTCAAGAAAAGAATTTTTAGTGTCATAAAAGAATTGTTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTATCGAGCCTACTGCACTCCCTAAAAGAACCTCACTTGAACCGTCAACTTTGAGCTTAATTGTCTCATTTCCGGTAAAATTTATGAAAAATTTGTTTACTGATAAATTATGTACCCCAATTTCACCAATATTTCATCAGTTGACATCGTTTTGATATCTTTTCTTGGAATCGAGATAATTGAGCTGAAAGTTGGCGGTTTCGATGTGGAAATACGGTATATTGAAAAAGATCCCAAGTATTTTTCTGATTCTGATGTTTTCAGTTCGCTCGTCGACTCCGAAGCCGATCTCTCTGCCGGAGAAGATTTCAGAGTCGGTTCTGGAGAACGTTCAAGGTTAGTTTTTTTTTCAGAGGCTTCGAATATTGGAAAAATACCGTAAGCTTGCAGGAAAAACCAAGAATCCTGAGAATGGCTCTGGGGAACTGGAGGCCTCACTCCAGGCTGTGACCGGAAATGGGCATGAAGAAGATGACCTTCTTCTCTGGAGCCCAAAAGCAAGTGAGTATTTCAAGAAAAGAATTTTTAGTGTCATAAAAGAATTGTTCTCTAGTTGAATCGAGGCTACATAACTGTACATAGCGTATTTTCTCTTTCGAAACGGTATATTCTAAGAAAACCCAAGTACTTTTTTTTGGGTGACCTGTTAACGGATCTTTTGCGAATAGCTTGTGTGAATATGAATTTCTCTTAACCATTATTTTTTCCAGATGGAGCACCTGCTCCAAAAGTCGAGGTCTCAGTTGTCGAGGCCCTAGCGGTCGAGGACCCAGCGATCGACGTCCAAGCGTCCAACACAGCAGCGGTCGAAGCTGCAGCAGGTCAGGAGACCAACGTTCGTCGCTCTGGCCGCAAGTCGGGAAAGCCGTCCCGCTTTGAGGAGTATCGTCTCGAAAAGGTGGCACCGCCACAGAAAAAGAGAAGAACTAAATAATTGTGGCTTTTTCGTATTCTACTTATTCGGTATTATTGTGCTCCTTTATTGTAAAACTACCTCTC</canonical>
            <polymorphic>TGTATCGAGCCTACTGCACTCCCTAAAAGAACCTCACTTGAACCGTCAACTTTGAGCTTAATTGTCTCATTTCCGGTAAAATTTATGAAAAATTTGTTTACTGATAAATTATGTACCCCAATTTCACCAATATTTCATCAGTTGACATCGTTTTGATATCTTTTCTTGGAATCGAGATAATTGAGCTGAAAGTTGGCGGTTTCGATGTGGAAATACGGTATATTGAAAAAGATCCCAAGTATTTTTCTGATTCTGATGTTTTCAGTTCGCTCGTCGACTCCGAAGCCGATCTCTCTGCCGGAGAAGATTTCAGAGTCGGTTCTGGAGAACGTTCAAGGTTAGTTTTTTTTTCAGAGGCTTCGAATATTGGAAAAATACCGTAAGCTTGCAGGAAAAACCAAGAATCCTGAGAATGGCTCTGGGGAACTGGAGGCCTCACTCCAGGCTGTGACCGGAAATGGGCATGAAGAAGATGACCTTCTTCTCTGGAGCCCAAAAGSAAGTGAGTATTTCAAGAAAAGAATTTTTAGTGTCATAAAAGAATTGTTCTCTAGTTGAATCGAGGCTACATAACTGTACATAGCGTATTTTCTCTTTCGAAACGGTATATTCTAAGAAAACCCAAGTACTTTTTTTTGGGTGACCTGTTAACGGATCTTTTGCGAATAGCTTGTGTGAATATGAATTTCTCTTAACCATTATTTTTTCCAGATGGAGCACCTGCTCCAAAAGTCGAGGTCTCAGTTGTCGAGGCCCTAGCGGTCGAGGACCCAGCGATCGACGTCCAAGCGTCCAACACAGCAGCGGTCGAAGCTGCAGCAGGTCAGGAGACCAACGTTCGTCGCTCTGGCCGCAAGTCGGGAAAGCCGTCCCGCTTTGAGGAGTATCGTCTCGAAAAGGTGGCACCGCCACAGAAAAAGAGAAGAACTAAATAATTGTGGCTTTTTCGTATTCTACTTATTCGGTATTATTGTGCTCCTTTATTGTAAAACTACCTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAACGTTCAAGGTTAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TATGTAGCCTCGATTCAACTAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAGAACGTTCAAGGTTAGTTTTTTTTTCAGAGGCTTCGAATATTGGAAAAATACCGTAAGCTTGCAGGAAAAACCAAGAATCCTGAGAATGGCTCTGGGGAACTGGAGGCCTCACTCCAGGCTGTGACCGGAAATGGGCATGAAGAAGATGACCTTCTTCTCTGGAGCCCAAAAGCAAGTGAGTATTTCAAGAAAAGAATTTTTAGTGTCATAAAAGAATTGTTCTCTAGTTGAATCGAGGCTACATA</canonical_amplicon>
		<polymorphic_amplicon>GAGAACGTTCAAGGTTAGTTTTTTTTTCAGAGGCTTCGAATATTGGAAAAATACCGTAAGCTTGCAGGAAAAACCAAGAATCCTGAGAATGGCTCTGGGGAACTGGAGGCCTCACTCCAGGCTGTGACCGGAAATGGGCATGAAGAAGATGACCTTCTTCTCTGGAGCCCAAAAGSAAGTGAGTATTTCAAGAAAAGAATTTTTAGTGTCATAAAAGAATTGTTCTCTAGTTGAATCGAGGCTACATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16184</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>235722</contig_pos>
        <strand>+</strand>
        <context>CTAAGAAAAC[G/T]TGAAAATTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTATTGCGAAAAGAGATGGCAACGTCTGGATGGGCAGAACTAAGAAAAC</left_flank>
        <right_flank>TGAAAATTAACTAAAAGCAAAACAACTTGAAGCAATGCTTTTCCGATGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTTTAATTCATTTTTCAGTATTTAGAGAAGTTAGGTTTCATACTGTATTTTTGAATCCATTTAAAAAATTGAAAGAAAAACATACATGTTTTGGGAATAAATACCAGACGAAGAGTCCCACAACCACTCCCAGCACATGCAAAGATATTGAGATTATCGTGTGCGTTGTGTAGGATAGCGTCCACATTGTGATTTACCTGAAAGAAATCGTCGTTATTGTGATTTGTAAGATTTAGAAATTCTGTAGAAAATATAGAGAAGCCTATAAAGAAAGCAGCGTTTGTAATCTATGGTTGTGTTGTCGTCGCACGCCGGCAGATTGGCCACAAACGATTTTCTGCGCGCAGAAAGATTTTCTCGTTTGGCGACGGCTTCTGCATCTCTTCCCATTAGCCGAGACAACAATGACACTGACCAATTCATTTTTTGAATGGCTGCCGTTCGTCGTGTATTGCGAAAAGAGATGGCAACGTCTGGATGGGCAGAACTAAGAAAACGTGAAAATTAACTAAAAGCAAAACAACTTGAAGCAATGCTTTTCCGATGAAGCCGTCAATAGCTTAACGGTCGAACCGGTTCTCGCTTTCTATGGGATATAAAGATTTTGCGTCATTCCACTCTTTTTATAGCCAAAAACAGAAACACTAGTCACGATATAAAGTCAAAAATGGAACATTTTGAAAATTCCCGATATGCAAATGATACAATTCATACTACAGTTGATTTCCTTCTTCATTCCCTCCCACTGAGCGTCGTCTCGAAGTCTTCTCTCTCGGAACGCCATTATCTCTAGCCAGTGTGACCCCGATCCGGTCGCTTACCGTCACAAAATGTGGTGTTGAGAGGGAAAAGGAAGGAAAAAGAGGAAGAAACTGAATAGAGTAGTTTGGAGTAAGAGAAAAGAAGCTTGGTCGGGATGAATAGAGATGGGTAGAGACTTGTTCCAGTTACTGTAAACTTGAAATGTTTACTTCTTTGAACTTGGAGTAATACTGAAG</canonical>
            <polymorphic>ATCTTTAATTCATTTTTCAGTATTTAGAGAAGTTAGGTTTCATACTGTATTTTTGAATCCATTTAAAAAATTGAAAGAAAAACATACATGTTTTGGGAATAAATACCAGACGAAGAGTCCCACAACCACTCCCAGCACATGCAAAGATATTGAGATTATCGTGTGCGTTGTGTAGGATAGCGTCCACATTGTGATTTACCTGAAAGAAATCGTCGTTATTGTGATTTGTAAGATTTAGAAATTCTGTAGAAAATATAGAGAAGCCTATAAAGAAAGCAGCGTTTGTAATCTATGGTTGTGTTGTCGTCGCACGCCGGCAGATTGGCCACAAACGATTTTCTGCGCGCAGAAAGATTTTCTCGTTTGGCGACGGCTTCTGCATCTCTTCCCATTAGCCGAGACAACAATGACACTGACCAATTCATTTTTTGAATGGCTGCCGTTCGTCGTGTATTGCGAAAAGAGATGGCAACGTCTGGATGGGCAGAACTAAGAAAACKTGAAAATTAACTAAAAGCAAAACAACTTGAAGCAATGCTTTTCCGATGAAGCCGTCAATAGCTTAACGGTCGAACCGGTTCTCGCTTTCTATGGGATATAAAGATTTTGCGTCATTCCACTCTTTTTATAGCCAAAAACAGAAACACTAGTCACGATATAAAGTCAAAAATGGAACATTTTGAAAATTCCCGATATGCAAATGATACAATTCATACTACAGTTGATTTCCTTCTTCATTCCCTCCCACTGAGCGTCGTCTCGAAGTCTTCTCTCTCGGAACGCCATTATCTCTAGCCAGTGTGACCCCGATCCGGTCGCTTACCGTCACAAAATGTGGTGTTGAGAGGGAAAAGGAAGGAAAAAGAGGAAGAAACTGAATAGAGTAGTTTGGAGTAAGAGAAAAGAAGCTTGGTCGGGATGAATAGAGATGGGTAGAGACTTGTTCCAGTTACTGTAAACTTGAAATGTTTACTTCTTTGAACTTGGAGTAATACTGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>160 122 117 94 84 77 54 51 39 30 27 26 25 17 14 11 9 9 7 7 7 6 3 2 2</canonical_bands>
                <polymorphic_bands>168 160 122 94 84 77 54 39 30 27 26 25 17 14 11 9 9 7 7 7 6 3 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>502 472 26</canonical_bands>
                <polymorphic_bands>528 472</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGACACTGACCAATTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>TCGTGACTAGTGTTTCTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGACACTGACCAATTCATTTTTTGAATGGCTGCCGTTCGTCGTGTATTGCGAAAAGAGATGGCAACGTCTGGATGGGCAGAACTAAGAAAACGTGAAAATTAACTAAAAGCAAAACAACTTGAAGCAATGCTTTTCCGATGAAGCCGTCAATAGCTTAACGGTCGAACCGGTTCTCGCTTTCTATGGGATATAAAGATTTTGCGTCATTCCACTCTTTTTATAGCCAAAAACAGAAACACTAGTCACGA</canonical_amplicon>
		<polymorphic_amplicon>ATGACACTGACCAATTCATTTTTTGAATGGCTGCCGTTCGTCGTGTATTGCGAAAAGAGATGGCAACGTCTGGATGGGCAGAACTAAGAAAACKTGAAAATTAACTAAAAGCAAAACAACTTGAAGCAATGCTTTTCCGATGAAGCCGTCAATAGCTTAACGGTCGAACCGGTTCTCGCTTTCTATGGGATATAAAGATTTTGCGTCATTCCACTCTTTTTATAGCCAAAAACAGAAACACTAGTCACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16185</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>238766</contig_pos>
        <strand>+</strand>
        <context>AAAACCACCA[A/G]TGCTACTTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTACCCCAAATAAATTTCCCAGCCAACGTGGATTCCACAAAAACCACCA</left_flank>
        <right_flank>TGCTACTTCCCCGAAAAAAGTTAGACCGATTTTCACAAATTCCACTGCTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAACCATGACAAAGTTGCCAGACATAGTTCGGACCTATTTCAGCGTGCCGTTCGTTTCGATCTCAACAACCCTGATTCACCGATCAAGTCATTCTACAGACAATGGGAGAAGGTGTGGAAGATGAAGGAAAAAAGTGCACTCGAGAATTCAAAGAAGGATGATAAGAAGAAAAAGAAAGAGGAAGAAGCGGCGAAGAAACGAAAAGCCACAGAGACGCTGGAAGACGACGACGATGAAGACGCCAAACCAACGATTCCAAAAGCCAAAAGGAAGAGAATCAAGATTGGAGCAGCTGCGAAGAGGGCGGATGCAACTGTTCCGGATCAATTCGCCGATATGTCACTGGCCAATTGGAGTGACGAGGATTAGACCTGTATTCAATTTTTATGTTGTTGATTTTATTGTTTTTTGGTTTTTTTGTTGTTTTTTTTCTAATTTTTTTATTATTTACCCCAAATAAATTTCCCAGCCAACGTGGATTCCACAAAAACCACCAATGCTACTTCCCCGAAAAAAGTTAGACCGATTTTCACAAATTCCACTGCTCACTTCTCGAAACTAGTAGCAACTCGAGAGTGTGGGCTGCTGTTCGCCACCAGAAGACACGTGTAATTGGCTGAACCTGAAAAAGAGAAAACAACCAACAAAATGGCATCGGTTAAAGATGATGAAGATCTCAGTAAGATTTTGGAATTCTGAGATTCGCGAAGTCAGACATTTTGGGATGAAGATTCAGTTTGTGAGGTTTTTAGGTTACTTTAGAGATTTGGAGTTCGTAAGATCCTGAGACTTTTAATCATCTAGATTGTCAGAAGATTTGAAATCCCGAGATTTGGAAAATTCGCAAAGTGACCGAACTTTCCCAACGCGCTTTTTCTAGGCCACCCTAGTTGGTTGATTGTAGCGTCTGATGTGTCTTCTAGGTCATTTTAACATGGCGGCTTAACTTTTGCAACTGGAGTTTTCTAGGTCACCAACTTTCATGTTTCGAACGTTC</canonical>
            <polymorphic>TTCAACCATGACAAAGTTGCCAGACATAGTTCGGACCTATTTCAGCGTGCCGTTCGTTTCGATCTCAACAACCCTGATTCACCGATCAAGTCATTCTACAGACAATGGGAGAAGGTGTGGAAGATGAAGGAAAAAAGTGCACTCGAGAATTCAAAGAAGGATGATAAGAAGAAAAAGAAAGAGGAAGAAGCGGCGAAGAAACGAAAAGCCACAGAGACGCTGGAAGACGACGACGATGAAGACGCCAAACCAACGATTCCAAAAGCCAAAAGGAAGAGAATCAAGATTGGAGCAGCTGCGAAGAGGGCGGATGCAACTGTTCCGGATCAATTCGCCGATATGTCACTGGCCAATTGGAGTGACGAGGATTAGACCTGTATTCAATTTTTATGTTGTTGATTTTATTGTTTTTTGGTTTTTTTGTTGTTTTTTTTCTAATTTTTTTATTATTTACCCCAAATAAATTTCCCAGCCAACGTGGATTCCACAAAAACCACCARTGCTACTTCCCCGAAAAAAGTTAGACCGATTTTCACAAATTCCACTGCTCACTTCTCGAAACTAGTAGCAACTCGAGAGTGTGGGCTGCTGTTCGCCACCAGAAGACACGTGTAATTGGCTGAACCTGAAAAAGAGAAAACAACCAACAAAATGGCATCGGTTAAAGATGATGAAGATCTCAGTAAGATTTTGGAATTCTGAGATTCGCGAAGTCAGACATTTTGGGATGAAGATTCAGTTTGTGAGGTTTTTAGGTTACTTTAGAGATTTGGAGTTCGTAAGATCCTGAGACTTTTAATCATCTAGATTGTCAGAAGATTTGAAATCCCGAGATTTGGAAAATTCGCAAAGTGACCGAACTTTCCCAACGCGCTTTTTCTAGGCCACCCTAGTTGGTTGATTGTAGCGTCTGATGTGTCTTCTAGGTCATTTTAACATGGCGGCTTAACTTTTGCAACTGGAGTTTTCTAGGTCACCAACTTTCATGTTTCGAACGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGACGAGGATTAGACCTGTAT</pcr_primer_p1>
		<pcr_primer_p2>CACTCTCGAGTTGCTACTAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>224</pcr_amplicon_size>
		<canonical_amplicon>AGTGACGAGGATTAGACCTGTATTCAATTTTTATGTTGTTGATTTTATTGTTTTTTGGTTTTTTTGTTGTTTTTTTTCTAATTTTTTTATTATTTACCCCAAATAAATTTCCCAGCCAACGTGGATTCCACAAAAACCACCAATGCTACTTCCCCGAAAAAAGTTAGACCGATTTTCACAAATTCCACTGCTCACTTCTCGAAACTAGTAGCAACTCGAGAGTG</canonical_amplicon>
		<polymorphic_amplicon>AGTGACGAGGATTAGACCTGTATTCAATTTTTATGTTGTTGATTTTATTGTTTTTTGGTTTTTTTGTTGTTTTTTTTCTAATTTTTTTATTATTTACCCCAAATAAATTTCCCAGCCAACGTGGATTCCACAAAAACCACCARTGCTACTTCCCCGAAAAAAGTTAGACCGATTTTCACAAATTCCACTGCTCACTTCTCGAAACTAGTAGCAACTCGAGAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16186</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>238718</contig_pos>
        <strand></strand>
        <context>ttttattatt[T/G]ACCCCAAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTATTGTTTTTTGGTTTTTTTGTTGTTTTTTTTCTAATTTTTTTATTATT</left_flank>
        <right_flank>ACCCCAAATAAATTTCCCAGCCAACGTGGATTCCACAAAAACCACCAATG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGCTCGAAAACACGTGGATTTGAATGATGAGATGCAAGTGGTACGTTTCAACCATGACAAAGTTGCCAGACATAGTTCGGACCTATTTCAGCGTGCCGTTCGTTTCGATCTCAACAACCCTGATTCACCGATCAAGTCATTCTACAGACAATGGGAGAAGGTGTGGAAGATGAAGGAAAAAAGTGCACTCGAGAATTCAAAGAAGGATGATAAGAAGAAAAAGAAAGAGGAAGAAGCGGCGAAGAAACGAAAAGCCACAGAGACGCTGGAAGACGACGACGATGAAGACGCCAAACCAACGATTCCAAAAGCCAAAAGGAAGAGAATCAAGATTGGAGCAGCTGCGAAGAGGGCGGATGCAACTGTTCCGGATCAATTCGCCGATATGTCACTGGCCAATTGGAGTGACGAGGATTAGACCTGTATTCAATTTTTATGTTGTTGATTTTATTGTTTTTTGGTTTTTTTGTTGTTTTTTTTCTAATTTTTTTATTATTTACCCCAAATAAATTTCCCAGCCAACGTGGATTCCACAAAAACCACCAATGCTACTTCCCCGAAAAAAGTTAGACCGATTTTCACAAATTCCACTGCTCACTTCTCGAAACTAGTAGCAACTCGAGAGTGTGGGCTGCTGTTCGCCACCAGAAGACACGTGTAATTGGCTGAACCTGAAAAAGAGAAAACAACCAACAAAATGGCATCGGTTAAAGATGATGAAGATCTCAGTAAGATTTTGGAATTCTGAGATTCGCGAAGTCAGACATTTTGGGATGAAGATTCAGTTTGTGAGGTTTTTAGGTTACTTTAGAGATTTGGAGTTCGTAAGATCCTGAGACTTTTAATCATCTAGATTGTCAGAAGATTTGAAATCCCGAGATTTGGAAAATTCGCAAAGTGACCGAACTTTCCCAACGCGCTTTTTCTAGGCCACCCTAGTTGGTTGATTGTAGCGTCTGATGTGTCTTCTAGGTCATTTTAACATGGCGGCTTAACTT</canonical>
            <polymorphic>TTGGCTCGAAAACACGTGGATTTGAATGATGAGATGCAAGTGGTACGTTTCAACCATGACAAAGTTGCCAGACATAGTTCGGACCTATTTCAGCGTGCCGTTCGTTTCGATCTCAACAACCCTGATTCACCGATCAAGTCATTCTACAGACAATGGGAGAAGGTGTGGAAGATGAAGGAAAAAAGTGCACTCGAGAATTCAAAGAAGGATGATAAGAAGAAAAAGAAAGAGGAAGAAGCGGCGAAGAAACGAAAAGCCACAGAGACGCTGGAAGACGACGACGATGAAGACGCCAAACCAACGATTCCAAAAGCCAAAAGGAAGAGAATCAAGATTGGAGCAGCTGCGAAGAGGGCGGATGCAACTGTTCCGGATCAATTCGCCGATATGTCACTGGCCAATTGGAGTGACGAGGATTAGACCTGTATTCAATTTTTATGTTGTTGATTTTATTGTTTTTTGGTTTTTTTGTTGTTTTTTTTCTAATTTTTTTATTATTKACCCCAAATAAATTTCCCAGCCAACGTGGATTCCACAAAAACCACCAATGCTACTTCCCCGAAAAAAGTTAGACCGATTTTCACAAATTCCACTGCTCACTTCTCGAAACTAGTAGCAACTCGAGAGTGTGGGCTGCTGTTCGCCACCAGAAGACACGTGTAATTGGCTGAACCTGAAAAAGAGAAAACAACCAACAAAATGGCATCGGTTAAAGATGATGAAGATCTCAGTAAGATTTTGGAATTCTGAGATTCGCGAAGTCAGACATTTTGGGATGAAGATTCAGTTTGTGAGGTTTTTAGGTTACTTTAGAGATTTGGAGTTCGTAAGATCCTGAGACTTTTAATCATCTAGATTGTCAGAAGATTTGAAATCCCGAGATTTGGAAAATTCGCAAAGTGACCGAACTTTCCCAACGCGCTTTTTCTAGGCCACCCTAGTTGGTTGATTGTAGCGTCTGATGTGTCTTCTAGGTCATTTTAACATGGCGGCTTAACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGACGAGGATTAGACCTGTAT</pcr_primer_p1>
		<pcr_primer_p2>CACTCTCGAGTTGCTACTAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>224</pcr_amplicon_size>
		<canonical_amplicon>AGTGACGAGGATTAGACCTGTATTCAATTTTTATGTTGTTGATTTTATTGTTTTTTGGTTTTTTTGTTGTTTTTTTTCTAATTTTTTTATTATTTACCCCAAATAAATTTCCCAGCCAACGTGGATTCCACAAAAACCACCAATGCTACTTCCCCGAAAAAAGTTAGACCGATTTTCACAAATTCCACTGCTCACTTCTCGAAACTAGTAGCAACTCGAGAGTG</canonical_amplicon>
		<polymorphic_amplicon>AGTGACGAGGATTAGACCTGTATTCAATTTTTATGTTGTTGATTTTATTGTTTTTTGGTTTTTTTGTTGTTTTTTTTCTAATTTTTTTATTATTKACCCCAAATAAATTTCCCAGCCAACGTGGATTCCACAAAAACCACCAATGCTACTTCCCCGAAAAAAGTTAGACCGATTTTCACAAATTCCACTGCTCACTTCTCGAAACTAGTAGCAACTCGAGAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16223</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>283458</contig_pos>
        <strand>+</strand>
        <context>GTAACAAAGA[A/G]CAAAGGTTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGTAAACTTTTTGGAGCAAGTTTGTGTGCTATTCGGATAGTAACAAAGA</left_flank>
        <right_flank>CAAAGGTTGGTTTTGGTGAACAACTTTTTTGTAGTCTAAAGAGATGTTTT</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTGGTTTTCTAGTCCCTCTAAAAAACGAGGCTATCATTCATTACTTTTGAGAGCTTCGGCACCAGACGTACAATCATAAAAGAAACATGACTTTTTGCAATATTTTCTAAAACAGCACCACAAAAAACTGTTTGAATGATTCCTTTTCATTAAGTTTTCCTAGTAAGATAGGGTATAGATTCTACTATGAATCCAGTTTCTTGTACATACATACATATAATTTGCACACAACCTTCGAACTCTGTTCAGCTTTTCCTTTAGTCTTCCGCGTATTGTTTGAGCAACGGAGAGCAACACAATGCTCTTTTCCGTTTAGGTTACTACGTGCAGGTTCTCGCTCGACTATTTTTGTTGCAAACCGATTTCGTTTCGGGTTATGCTTTCTGTTTTAAAAGTCAGTTCTATTTACTGAGTTGTTTACTATTGAAAATGCTAACAAACATGCTTGTAAACTTTTTGGAGCAAGTTTGTGTGCTATTCGGATAGTAACAAAGAGCAAAGGTTGGTTTTGGTGAACAACTTTTTTGTAGTCTAAAGAGATGTTTTGTAGTCTGAAATTTCGAAATTAATTCCAAATTAAATTCAAAACTTCCGAATTCTGAATCCATGGTCATTTTCAGTCAGCCAGTTTTGTCTAGACGTCATAAATTTAGCCCCTAGTTTCCTTTACCATACGATCCCACCTGAGGTCCCAACGATTACTCAATATTCTATGATTTCACTCAAAAATAGTTCGTCATGTCAAAGTTACAGTGATCAGAAAACAATTGGAAAAAAAGTTTCGAAAACATACGGATGATTCTCGACGATTTTCAGTAATTTCCGACACAACAAGATCATAAACAGACGGGGTACTTACAAGGGAAGTGTTTTCAGACAGTGGTTGAGAATTTCTTGAAAATTGGTACACATATACTTTCGGACATGGTCAATAACGAGACGACTTTTTTCGGGCCCCTCGGTACATAGAAGCTGAAAAAACGCGTCTGAAATTTC</canonical>
            <polymorphic>AAATTTGGTTTTCTAGTCCCTCTAAAAAACGAGGCTATCATTCATTACTTTTGAGAGCTTCGGCACCAGACGTACAATCATAAAAGAAACATGACTTTTTGCAATATTTTCTAAAACAGCACCACAAAAAACTGTTTGAATGATTCCTTTTCATTAAGTTTTCCTAGTAAGATAGGGTATAGATTCTACTATGAATCCAGTTTCTTGTACATACATACATATAATTTGCACACAACCTTCGAACTCTGTTCAGCTTTTCCTTTAGTCTTCCGCGTATTGTTTGAGCAACGGAGAGCAACACAATGCTCTTTTCCGTTTAGGTTACTACGTGCAGGTTCTCGCTCGACTATTTTTGTTGCAAACCGATTTCGTTTCGGGTTATGCTTTCTGTTTTAAAAGTCAGTTCTATTTACTGAGTTGTTTACTATTGAAAATGCTAACAAACATGCTTGTAAACTTTTTGGAGCAAGTTTGTGTGCTATTCGGATAGTAACAAAGARCAAAGGTTGGTTTTGGTGAACAACTTTTTTGTAGTCTAAAGAGATGTTTTGTAGTCTGAAATTTCGAAATTAATTCCAAATTAAATTCAAAACTTCCGAATTCTGAATCCATGGTCATTTTCAGTCAGCCAGTTTTGTCTAGACGTCATAAATTTAGCCCCTAGTTTCCTTTACCATACGATCCCACCTGAGGTCCCAACGATTACTCAATATTCTATGATTTCACTCAAAAATAGTTCGTCATGTCAAAGTTACAGTGATCAGAAAACAATTGGAAAAAAAGTTTCGAAAACATACGGATGATTCTCGACGATTTTCAGTAATTTCCGACACAACAAGATCATAAACAGACGGGGTACTTACAAGGGAAGTGTTTTCAGACAGTGGTTGAGAATTTCTTGAAAATTGGTACACATATACTTTCGGACATGGTCAATAACGAGACGACTTTTTTCGGGCCCCTCGGTACATAGAAGCTGAAAAAACGCGTCTGAAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGGTTACTACGTGCAGGTTC</pcr_primer_p1>
		<pcr_primer_p2>CGAAATTTCAGACTACAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAGGTTACTACGTGCAGGTTCTCGCTCGACTATTTTTGTTGCAAACCGATTTCGTTTCGGGTTATGCTTTCTGTTTTAAAAGTCAGTTCTATTTACTGAGTTGTTTACTATTGAAAATGCTAACAAACATGCTTGTAAACTTTTTGGAGCAAGTTTGTGTGCTATTCGGATAGTAACAAAGAGCAAAGGTTGGTTTTGGTGAACAACTTTTTTGTAGTCTAAAGAGATGTTTTGTAGTCTGAAATTTCG</canonical_amplicon>
		<polymorphic_amplicon>TTAGGTTACTACGTGCAGGTTCTCGCTCGACTATTTTTGTTGCAAACCGATTTCGTTTCGGGTTATGCTTTCTGTTTTAAAAGTCAGTTCTATTTACTGAGTTGTTTACTATTGAAAATGCTAACAAACATGCTTGTAAACTTTTTGGAGCAAGTTTGTGTGCTATTCGGATAGTAACAAAGARCAAAGGTTGGTTTTGGTGAACAACTTTTTTGTAGTCTAAAGAGATGTTTTGTAGTCTGAAATTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16225</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>291744</contig_pos>
        <strand>+</strand>
        <context>CCCCGTCTCC[C/T]TCTCTGTAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGGTCACATGCGGCGTCCCGGCGCCAGTTGAAGCGCCCGCCCCGTCTCC</left_flank>
        <right_flank>TCTCTGTAGAGGAAAAAAATTCCCGCTAACTGTCTAATTCTCTCCGTCGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGTTCTAGTCTTGCTAAAGTTGAGAATACTAGAAAATAATGGAACAGGTTTTGAGTATTAGGATTTTTGGATCCTAACGATGGTATTCGAGGTGTTCGTCATTCTAATGATCCTTGAGACAATAGTTCTTAGGTTCCGATATTTCTGAATTATTTGGAATTTTCAGATCTTATTCTGTGATAATCTGAAAACATCCTCTGATCTTGCAGAACAAAAATATTCTGTACCATATAATTTTCCAAGCGGGTTCAAATCCCAATGTGATCGTTCTCATATCGTTCTCTCTTCGCAAAAAAAATAAACCCATGTGAACCCCATGCGTTTATCTCTCTTATTTCATTTTGATTCTTAATTCTATCAATCTGAAACCGTTTCATTTTTTCACACACCTAGGCTCCTCCCATTTTCCTCTTCCCACCTGTGTGTGATATGGCGACAAACAAACCGGAGGTCACATGCGGCGTCCCGGCGCCAGTTGAAGCGCCCGCCCCGTCTCCTTCTCTGTAGAGGAAAAAAATTCCCGCTAACTGTCTAATTCTCTCCGTCGTCTAGAACATCTTTCACTTTTTCTCTAAGCCCCGCCCACTTTTCCCCCCATCCTTCCTCTTGGCTTCGCAATTCGTTCAAAGAGAGGAGCACTCTGTGTTCCACAAGTCCTACTCGACAGTATATAAAGAAGTACCTTAGGTTATCTTATATATCTTATATGTTTTTTGTTGTTTCTCAACTTTTATACTTTTTATAATATCACATACTTTATATAACATCTTATATCTACTTCTTATATTTTTCAGTATACAATTCCCCCTCTTCTCCTCCTTGAAACTCTGAAAATGATGGAAGTTGCCTCCTCATCGTCAGCCTTTGACGCCTCCAATCTTATCAACAATAACAATGAAGTGAAGCCTGCCCGTCCAAAAAGAGACTTCCGATTCAAAGTTATCGAAGTTCAAAACGGACCAAAATGGTTTGTATGGCCAAGCCGTAATCGTGGATCT</canonical>
            <polymorphic>TAGGTTCTAGTCTTGCTAAAGTTGAGAATACTAGAAAATAATGGAACAGGTTTTGAGTATTAGGATTTTTGGATCCTAACGATGGTATTCGAGGTGTTCGTCATTCTAATGATCCTTGAGACAATAGTTCTTAGGTTCCGATATTTCTGAATTATTTGGAATTTTCAGATCTTATTCTGTGATAATCTGAAAACATCCTCTGATCTTGCAGAACAAAAATATTCTGTACCATATAATTTTCCAAGCGGGTTCAAATCCCAATGTGATCGTTCTCATATCGTTCTCTCTTCGCAAAAAAAATAAACCCATGTGAACCCCATGCGTTTATCTCTCTTATTTCATTTTGATTCTTAATTCTATCAATCTGAAACCGTTTCATTTTTTCACACACCTAGGCTCCTCCCATTTTCCTCTTCCCACCTGTGTGTGATATGGCGACAAACAAACCGGAGGTCACATGCGGCGTCCCGGCGCCAGTTGAAGCGCCCGCCCCGTCTCCYTCTCTGTAGAGGAAAAAAATTCCCGCTAACTGTCTAATTCTCTCCGTCGTCTAGAACATCTTTCACTTTTTCTCTAAGCCCCGCCCACTTTTCCCCCCATCCTTCCTCTTGGCTTCGCAATTCGTTCAAAGAGAGGAGCACTCTGTGTTCCACAAGTCCTACTCGACAGTATATAAAGAAGTACCTTAGGTTATCTTATATATCTTATATGTTTTTTGTTGTTTCTCAACTTTTATACTTTTTATAATATCACATACTTTATATAACATCTTATATCTACTTCTTATATTTTTCAGTATACAATTCCCCCTCTTCTCCTCCTTGAAACTCTGAAAATGATGGAAGTTGCCTCCTCATCGTCAGCCTTTGACGCCTCCAATCTTATCAACAATAACAATGAAGTGAAGCCTGCCCGTCCAAAAAGAGACTTCCGATTCAAAGTTATCGAAGTTCAAAACGGACCAAAATGGTTTGTATGGCCAAGCCGTAATCGTGGATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGCGTTTATCTCTCTTATTTCA</pcr_primer_p1>
		<pcr_primer_p2>AAGTGAAAGATGTTCTAGACGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGCGTTTATCTCTCTTATTTCATTTTGATTCTTAATTCTATCAATCTGAAACCGTTTCATTTTTTCACACACCTAGGCTCCTCCCATTTTCCTCTTCCCACCTGTGTGTGATATGGCGACAAACAAACCGGAGGTCACATGCGGCGTCCCGGCGCCAGTTGAAGCGCCCGCCCCGTCTCCTTCTCTGTAGAGGAAAAAAATTCCCGCTAACTGTCTAATTCTCTCCGTCGTCTAGAACATCTTTCACTT</canonical_amplicon>
		<polymorphic_amplicon>ATGCGTTTATCTCTCTTATTTCATTTTGATTCTTAATTCTATCAATCTGAAACCGTTTCATTTTTTCACACACCTAGGCTCCTCCCATTTTCCTCTTCCCACCTGTGTGTGATATGGCGACAAACAAACCGGAGGTCACATGCGGCGTCCCGGCGCCAGTTGAAGCGCCCGCCCCGTCTCCYTCTCTGTAGAGGAAAAAAATTCCCGCTAACTGTCTAATTCTCTCCGTCGTCTAGAACATCTTTCACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16226</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>293717</contig_pos>
        <strand>+</strand>
        <context>ATGATTTTTA[C/T]AGACGTAACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCGGCGGAAGTCAAAACCAAATTTTAAGGTCATTTCAGATGATTTTTA</left_flank>
        <right_flank>AGACGTAACAGTCTGAAACCTCTGATAAAGTTGCACCCTGGAATTTTAGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATGTGCATATATGTGTTCTGTTATGTTTGCAAAGAAAAATATGCTGGGCAGAAAAACAGATCTTTGGGAAGGTGATGTCTGGGTTGATCAGAAAGAAACCAGGATCTTCAGTATGCTAACCTTGGAATTTCTAGATTTGGTTTGTAGGTCAAGCTGTTTGAGCCAACAGAACTCAACATGACACACTCGACAGTATCAACTCGCAGGACCATTTTATAACTGATCTCGTTTTGAAAATTAGACCACAATTAAGCACAAATTTACTTAAAGAACTGAGACCAGAGTCTTGAACTTTAAGCCTAAAGGTTCGAAGCCCAAGGTTCACAATCCCGCATTGTTTAATGTTTACCACAGATTTCTTCATAGGAATCCTCATTTAAAAATGATGAGCAATCCTTGCAGATTTTTTTAGTTGATCATAAGAACTTTGAAAAATAAACGGATTCCATTCGGCGGAAGTCAAAACCAAATTTTAAGGTCATTTCAGATGATTTTTACAGACGTAACAGTCTGAAACCTCTGATAAAGTTGCACCCTGGAATTTTAGTTAATGCCAGGTTTTTCTTGGTTGCTGTCACCAAACGAATCATAGCAGCAAAAATATTATATTCGTTGAGCATGTTTTGATATCTTTACCAGGAATCCAGAAAAAATGGCCCAAGGTTTCAGGGTGTCACTCTATTAGAGCTTTTATGGTAGCTTCTTCAGCCCTTGCTAAAATTAGGCCACCGCTCCTTTTTGTGCTTTACTCCGAACACACTTTTTCCGCCCTGAAACTCTATACCCCTGTGATTGCTCTGATTTTGACACTTGCAAAAAAAGTGTACCGGAAAAAAATCAATTAATTAAATAATTCCTCCTCCTCTCTTCCCTTTGTCCTCTCAACCCAGAACTACAATACAAAAGTGCAGAGTCAATGTTAGCTTGTCTTCTTTTCTTCAGCAGAAAAAAAGAGAACCATTGAGATCATCGATTCTATCGAACACACAAGGCCTTAC</canonical>
            <polymorphic>GTATGTGCATATATGTGTTCTGTTATGTTTGCAAAGAAAAATATGCTGGGCAGAAAAACAGATCTTTGGGAAGGTGATGTCTGGGTTGATCAGAAAGAAACCAGGATCTTCAGTATGCTAACCTTGGAATTTCTAGATTTGGTTTGTAGGTCAAGCTGTTTGAGCCAACAGAACTCAACATGACACACTCGACAGTATCAACTCGCAGGACCATTTTATAACTGATCTCGTTTTGAAAATTAGACCACAATTAAGCACAAATTTACTTAAAGAACTGAGACCAGAGTCTTGAACTTTAAGCCTAAAGGTTCGAAGCCCAAGGTTCACAATCCCGCATTGTTTAATGTTTACCACAGATTTCTTCATAGGAATCCTCATTTAAAAATGATGAGCAATCCTTGCAGATTTTTTTAGTTGATCATAAGAACTTTGAAAAATAAACGGATTCCATTCGGCGGAAGTCAAAACCAAATTTTAAGGTCATTTCAGATGATTTTTAYAGACGTAACAGTCTGAAACCTCTGATAAAGTTGCACCCTGGAATTTTAGTTAATGCCAGGTTTTTCTTGGTTGCTGTCACCAAACGAATCATAGCAGCAAAAATATTATATTCGTTGAGCATGTTTTGATATCTTTACCAGGAATCCAGAAAAAATGGCCCAAGGTTTCAGGGTGTCACTCTATTAGAGCTTTTATGGTAGCTTCTTCAGCCCTTGCTAAAATTAGGCCACCGCTCCTTTTTGTGCTTTACTCCGAACACACTTTTTCCGCCCTGAAACTCTATACCCCTGTGATTGCTCTGATTTTGACACTTGCAAAAAAAGTGTACCGGAAAAAAATCAATTAATTAAATAATTCCTCCTCCTCTCTTCCCTTTGTCCTCTCAACCCAGAACTACAATACAAAAGTGCAGAGTCAATGTTAGCTTGTCTTCTTTTCTTCAGCAGAAAAAAAGAGAACCATTGAGATCATCGATTCTATCGAACACACAAGGCCTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTGTTTAATGTTTACCACAGA</pcr_primer_p1>
		<pcr_primer_p2>AAAAACCTGGCATTAACTAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>CATTGTTTAATGTTTACCACAGATTTCTTCATAGGAATCCTCATTTAAAAATGATGAGCAATCCTTGCAGATTTTTTTAGTTGATCATAAGAACTTTGAAAAATAAACGGATTCCATTCGGCGGAAGTCAAAACCAAATTTTAAGGTCATTTCAGATGATTTTTACAGACGTAACAGTCTGAAACCTCTGATAAAGTTGCACCCTGGAATTTTAGTTAATGCCAGGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CATTGTTTAATGTTTACCACAGATTTCTTCATAGGAATCCTCATTTAAAAATGATGAGCAATCCTTGCAGATTTTTTTAGTTGATCATAAGAACTTTGAAAAATAAACGGATTCCATTCGGCGGAAGTCAAAACCAAATTTTAAGGTCATTTCAGATGATTTTTAYAGACGTAACAGTCTGAAACCTCTGATAAAGTTGCACCCTGGAATTTTAGTTAATGCCAGGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16227</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>293640</contig_pos>
        <strand></strand>
        <context>AGTTGATCAT[A/C]MGAACTTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCTCATTTAAAAATGATGAGCAATCCTTGCAGATTTTTTTAGTTGATCAT</left_flank>
        <right_flank>AGAACTTTGAAAAATAAACGGATTCCATTCGGCGGAAGTCAAAACCAAAT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGCAGCTATGGAAAAAAAAACACGGAACAAATATTTTTAGGGAAAAGAATAGGGATCAAAGCGTTTTGGGTGTGTATGTGCATATATGTGTTCTGTTATGTTTGCAAAGAAAAATATGCTGGGCAGAAAAACAGATCTTTGGGAAGGTGATGTCTGGGTTGATCAGAAAGAAACCAGGATCTTCAGTATGCTAACCTTGGAATTTCTAGATTTGGTTTGTAGGTCAAGCTGTTTGAGCCAACAGAACTCAACATGACACACTCGACAGTATCAACTCGCAGGACCATTTTATAACTGATCTCGTTTTGAAAATTAGACCACAATTAAGCACAAATTTACTTAAAGAACTGAGACCAGAGTCTTGAACTTTAAGCCTAAAGGTTCGAAGCCCAAGGTTCACAATCCCGCATTGTTTAATGTTTACCACAGATTTCTTCATAGGAATCCTCATTTAAAAATGATGAGCAATCCTTGCAGATTTTTTTAGTTGATCATAAGAACTTTGAAAAATAAACGGATTCCATTCGGCGGAAGTCAAAACCAAATTTTAAGGTCATTTCAGATGATTTTTACAGACGTAACAGTCTGAAACCTCTGATAAAGTTGCACCCTGGAATTTTAGTTAATGCCAGGTTTTTCTTGGTTGCTGTCACCAAACGAATCATAGCAGCAAAAATATTATATTCGTTGAGCATGTTTTGATATCTTTACCAGGAATCCAGAAAAAATGGCCCAAGGTTTCAGGGTGTCACTCTATTAGAGCTTTTATGGTAGCTTCTTCAGCCCTTGCTAAAATTAGGCCACCGCTCCTTTTTGTGCTTTACTCCGAACACACTTTTTCCGCCCTGAAACTCTATACCCCTGTGATTGCTCTGATTTTGACACTTGCAAAAAAAGTGTACCGGAAAAAAATCAATTAATTAAATAATTCCTCCTCCTCTCTTCCCTTTGTCCTCTCAACCCAGAACTACAATACAAAAGTGCAGAGTCAATGTT</canonical>
            <polymorphic>TTTTTGCAGCTATGGAAAAAAAAACACGGAACAAATATTTTTAGGGAAAAGAATAGGGATCAAAGCGTTTTGGGTGTGTATGTGCATATATGTGTTCTGTTATGTTTGCAAAGAAAAATATGCTGGGCAGAAAAACAGATCTTTGGGAAGGTGATGTCTGGGTTGATCAGAAAGAAACCAGGATCTTCAGTATGCTAACCTTGGAATTTCTAGATTTGGTTTGTAGGTCAAGCTGTTTGAGCCAACAGAACTCAACATGACACACTCGACAGTATCAACTCGCAGGACCATTTTATAACTGATCTCGTTTTGAAAATTAGACCACAATTAAGCACAAATTTACTTAAAGAACTGAGACCAGAGTCTTGAACTTTAAGCCTAAAGGTTCGAAGCCCAAGGTTCACAATCCCGCATTGTTTAATGTTTACCACAGATTTCTTCATAGGAATCCTCATTTAAAAATGATGAGCAATCCTTGCAGATTTTTTTAGTTGATCATMAGAACTTTGAAAAATAAACGGATTCCATTCGGCGGAAGTCAAAACCAAATTTTAAGGTCATTTCAGATGATTTTTACAGACGTAACAGTCTGAAACCTCTGATAAAGTTGCACCCTGGAATTTTAGTTAATGCCAGGTTTTTCTTGGTTGCTGTCACCAAACGAATCATAGCAGCAAAAATATTATATTCGTTGAGCATGTTTTGATATCTTTACCAGGAATCCAGAAAAAATGGCCCAAGGTTTCAGGGTGTCACTCTATTAGAGCTTTTATGGTAGCTTCTTCAGCCCTTGCTAAAATTAGGCCACCGCTCCTTTTTGTGCTTTACTCCGAACACACTTTTTCCGCCCTGAAACTCTATACCCCTGTGATTGCTCTGATTTTGACACTTGCAAAAAAAGTGTACCGGAAAAAAATCAATTAATTAAATAATTCCTCCTCCTCTCTTCCCTTTGTCCTCTCAACCCAGAACTACAATACAAAAGTGCAGAGTCAATGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAATTAGACCACAATTAAGC</pcr_primer_p1>
		<pcr_primer_p2>GACCTTAAAATTTGGTTTTGACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAAAATTAGACCACAATTAAGCACAAATTTACTTAAAGAACTGAGACCAGAGTCTTGAACTTTAAGCCTAAAGGTTCGAAGCCCAAGGTTCACAATCCCGCATTGTTTAATGTTTACCACAGATTTCTTCATAGGAATCCTCATTTAAAAATGATGAGCAATCCTTGCAGATTTTTTTAGTTGATCATAAGAACTTTGAAAAATAAACGGATTCCATTCGGCGGAAGTCAAAACCAAATTTTAAGGTC</canonical_amplicon>
		<polymorphic_amplicon>TGAAAATTAGACCACAATTAAGCACAAATTTACTTAAAGAACTGAGACCAGAGTCTTGAACTTTAAGCCTAAAGGTTCGAAGCCCAAGGTTCACAATCCCGCATTGTTTAATGTTTACCACAGATTTCTTCATAGGAATCCTCATTTAAAAATGATGAGCAATCCTTGCAGATTTTTTTAGTTGATCATMAGAACTTTGAAAAATAAACGGATTCCATTCGGCGGAAGTCAAAACCAAATTTTAAGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16228</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>293614</contig_pos>
        <strand>+</strand>
        <context>GATGAGCAAT[C/T]CTTGCAGATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTACCACAGATTTCTTCATAGGAATCCTCATTTAAAAATGATGAGCAAT</left_flank>
        <right_flank>CTTGCAGATTTTTTTAGTTGATCATAAGAACTTTGAAAAATAAACGGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGACAGTTTTGTTATTATTATTACTTTTTGCAGCTATGGAAAAAAAAACACGGAACAAATATTTTTAGGGAAAAGAATAGGGATCAAAGCGTTTTGGGTGTGTATGTGCATATATGTGTTCTGTTATGTTTGCAAAGAAAAATATGCTGGGCAGAAAAACAGATCTTTGGGAAGGTGATGTCTGGGTTGATCAGAAAGAAACCAGGATCTTCAGTATGCTAACCTTGGAATTTCTAGATTTGGTTTGTAGGTCAAGCTGTTTGAGCCAACAGAACTCAACATGACACACTCGACAGTATCAACTCGCAGGACCATTTTATAACTGATCTCGTTTTGAAAATTAGACCACAATTAAGCACAAATTTACTTAAAGAACTGAGACCAGAGTCTTGAACTTTAAGCCTAAAGGTTCGAAGCCCAAGGTTCACAATCCCGCATTGTTTAATGTTTACCACAGATTTCTTCATAGGAATCCTCATTTAAAAATGATGAGCAATCCTTGCAGATTTTTTTAGTTGATCATAAGAACTTTGAAAAATAAACGGATTCCATTCGGCGGAAGTCAAAACCAAATTTTAAGGTCATTTCAGATGATTTTTACAGACGTAACAGTCTGAAACCTCTGATAAAGTTGCACCCTGGAATTTTAGTTAATGCCAGGTTTTTCTTGGTTGCTGTCACCAAACGAATCATAGCAGCAAAAATATTATATTCGTTGAGCATGTTTTGATATCTTTACCAGGAATCCAGAAAAAATGGCCCAAGGTTTCAGGGTGTCACTCTATTAGAGCTTTTATGGTAGCTTCTTCAGCCCTTGCTAAAATTAGGCCACCGCTCCTTTTTGTGCTTTACTCCGAACACACTTTTTCCGCCCTGAAACTCTATACCCCTGTGATTGCTCTGATTTTGACACTTGCAAAAAAAGTGTACCGGAAAAAAATCAATTAATTAAATAATTCCTCCTCCTCTCTTCCCTTTGTCCTCTCAACCCAGAACTA</canonical>
            <polymorphic>TCAGACAGTTTTGTTATTATTATTACTTTTTGCAGCTATGGAAAAAAAAACACGGAACAAATATTTTTAGGGAAAAGAATAGGGATCAAAGCGTTTTGGGTGTGTATGTGCATATATGTGTTCTGTTATGTTTGCAAAGAAAAATATGCTGGGCAGAAAAACAGATCTTTGGGAAGGTGATGTCTGGGTTGATCAGAAAGAAACCAGGATCTTCAGTATGCTAACCTTGGAATTTCTAGATTTGGTTTGTAGGTCAAGCTGTTTGAGCCAACAGAACTCAACATGACACACTCGACAGTATCAACTCGCAGGACCATTTTATAACTGATCTCGTTTTGAAAATTAGACCACAATTAAGCACAAATTTACTTAAAGAACTGAGACCAGAGTCTTGAACTTTAAGCCTAAAGGTTCGAAGCCCAAGGTTCACAATCCCGCATTGTTTAATGTTTACCACAGATTTCTTCATAGGAATCCTCATTTAAAAATGATGAGCAATYCTTGCAGATTTTTTTAGTTGATCATAAGAACTTTGAAAAATAAACGGATTCCATTCGGCGGAAGTCAAAACCAAATTTTAAGGTCATTTCAGATGATTTTTACAGACGTAACAGTCTGAAACCTCTGATAAAGTTGCACCCTGGAATTTTAGTTAATGCCAGGTTTTTCTTGGTTGCTGTCACCAAACGAATCATAGCAGCAAAAATATTATATTCGTTGAGCATGTTTTGATATCTTTACCAGGAATCCAGAAAAAATGGCCCAAGGTTTCAGGGTGTCACTCTATTAGAGCTTTTATGGTAGCTTCTTCAGCCCTTGCTAAAATTAGGCCACCGCTCCTTTTTGTGCTTTACTCCGAACACACTTTTTCCGCCCTGAAACTCTATACCCCTGTGATTGCTCTGATTTTGACACTTGCAAAAAAAGTGTACCGGAAAAAAATCAATTAATTAAATAATTCCTCCTCCTCTCTTCCCTTTGTCCTCTCAACCCAGAACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAATTAGACCACAATTAAGC</pcr_primer_p1>
		<pcr_primer_p2>GACCTTAAAATTTGGTTTTGACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAAAATTAGACCACAATTAAGCACAAATTTACTTAAAGAACTGAGACCAGAGTCTTGAACTTTAAGCCTAAAGGTTCGAAGCCCAAGGTTCACAATCCCGCATTGTTTAATGTTTACCACAGATTTCTTCATAGGAATCCTCATTTAAAAATGATGAGCAATCCTTGCAGATTTTTTTAGTTGATCATAAGAACTTTGAAAAATAAACGGATTCCATTCGGCGGAAGTCAAAACCAAATTTTAAGGTC</canonical_amplicon>
		<polymorphic_amplicon>TGAAAATTAGACCACAATTAAGCACAAATTTACTTAAAGAACTGAGACCAGAGTCTTGAACTTTAAGCCTAAAGGTTCGAAGCCCAAGGTTCACAATCCCGCATTGTTTAATGTTTACCACAGATTTCTTCATAGGAATCCTCATTTAAAAATGATGAGCAATYCTTGCAGATTTTTTTAGTTGATCATAAGAACTTTGAAAAATAAACGGATTCCATTCGGCGGAAGTCAAAACCAAATTTTAAGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16229</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>345284</contig_pos>
        <strand>+</strand>
        <context>GATACCCATT[C/T]ATGTTTTGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCAACCAAATTTAAAGATTGATCTTCCCTCTTCCCCATGATACCCATT</left_flank>
        <right_flank>ATGTTTTGATCTCTGTTTCGGTCCCAAAATTCCACTCTTGTTATTTTGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCACAGGTACCTCTATCTCCAGATGACCCTATGTTCTTACACGTCTTCTATACAGCGTCTAAGTAACCGACTGGATAACTTATTAGGTTGTGGGACCATCTGGGGATTTTCCCTGGTGGTCTTCGAGTGATGACGAGGACCCACACGATGATACACTACACCGCACGGCGTTAGCACGCCGAACATCGCTGGAGGACCAGCAACGACAAGGAAGGAGCGATTAAAGGAAGGGTTTATGATAAATGTACTGTTTTGAATTGAAATCTGAAAGAATACATAATTTTTTTTCCATTTTAGCTTTTATGTCGCTCCTTATAATTCGACTCATTTATATTCTATGAGTTTATTAAAGTTAATTGATTTTTTTGTATTTTTCTATCGAAAATGAGTAGGGAAAGACAGATGGGATTTGGAAATTTCAAAATTGTGAGATTCAGCAATTTGAAAATTCAACCAAATTTAAAGATTGATCTTCCCTCTTCCCCATGATACCCATTCATGTTTTGATCTCTGTTTCGGTCCCAAAATTCCACTCTTGTTATTTTGAACCTTCGATCTTTTTACCAGGAATTGGTTTGATTCTCTGAGCTCTCTCCCAAACATTCTTCCATCCACTTCCCGATTTCCTCAAACTGCACGTTCCAATCCAGATGTATATACCCAAACAACCTCTGCTCTCTCCATATATAGTAAACTCTACGTAGGCAATGTCCATGAATGTGTGACTCTGTGGTGTAACACACATTAACACGATTAAATTTTCGAAAAAAAGAATATCTTCCAAGAATCGCAAACACGCTTCCTCTCCAATTCAGAATTTCCGAGTACCGTAGGAAAATTATTTTGCAAGAAGCGTTTCATTTTTCTTACTCCAACTCCATGGGGGGCACCAGGAGCAGACATATACAACAATTGAGCACGGGAATTCTGGACCTGAACATCTATTTCTGTCTCTCGATGATGTTCATAAAGAAAACTTTTTCGGGTTGGGAAAACAA</canonical>
            <polymorphic>TTTCACAGGTACCTCTATCTCCAGATGACCCTATGTTCTTACACGTCTTCTATACAGCGTCTAAGTAACCGACTGGATAACTTATTAGGTTGTGGGACCATCTGGGGATTTTCCCTGGTGGTCTTCGAGTGATGACGAGGACCCACACGATGATACACTACACCGCACGGCGTTAGCACGCCGAACATCGCTGGAGGACCAGCAACGACAAGGAAGGAGCGATTAAAGGAAGGGTTTATGATAAATGTACTGTTTTGAATTGAAATCTGAAAGAATACATAATTTTTTTTCCATTTTAGCTTTTATGTCGCTCCTTATAATTCGACTCATTTATATTCTATGAGTTTATTAAAGTTAATTGATTTTTTTGTATTTTTCTATCGAAAATGAGTAGGGAAAGACAGATGGGATTTGGAAATTTCAAAATTGTGAGATTCAGCAATTTGAAAATTCAACCAAATTTAAAGATTGATCTTCCCTCTTCCCCATGATACCCATTYATGTTTTGATCTCTGTTTCGGTCCCAAAATTCCACTCTTGTTATTTTGAACCTTCGATCTTTTTACCAGGAATTGGTTTGATTCTCTGAGCTCTCTCCCAAACATTCTTCCATCCACTTCCCGATTTCCTCAAACTGCACGTTCCAATCCAGATGTATATACCCAAACAACCTCTGCTCTCTCCATATATAGTAAACTCTACGTAGGCAATGTCCATGAATGTGTGACTCTGTGGTGTAACACACATTAACACGATTAAATTTTCGAAAAAAAGAATATCTTCCAAGAATCGCAAACACGCTTCCTCTCCAATTCAGAATTTCCGAGTACCGTAGGAAAATTATTTTGCAAGAAGCGTTTCATTTTTCTTACTCCAACTCCATGGGGGGCACCAGGAGCAGACATATACAACAATTGAGCACGGGAATTCTGGACCTGAACATCTATTTCTGTCTCTCGATGATGTTCATAAAGAAAACTTTTTCGGGTTGGGAAAACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>487 215 166 119 13</canonical_bands>
                <polymorphic_bands>487 228 166 119</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTCAACCAAATTTAAAGA</pcr_primer_p1>
		<pcr_primer_p2>CTATATATGGAGAGAGCAGAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTCAACCAAATTTAAAGATTGATCTTCCCTCTTCCCCATGATACCCATTCATGTTTTGATCTCTGTTTCGGTCCCAAAATTCCACTCTTGTTATTTTGAACCTTCGATCTTTTTACCAGGAATTGGTTTGATTCTCTGAGCTCTCTCCCAAACATTCTTCCATCCACTTCCCGATTTCCTCAAACTGCACGTTCCAATCCAGATGTATATACCCAAACAACCTCTGCTCTCTCCATATATAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTCAACCAAATTTAAAGATTGATCTTCCCTCTTCCCCATGATACCCATTYATGTTTTGATCTCTGTTTCGGTCCCAAAATTCCACTCTTGTTATTTTGAACCTTCGATCTTTTTACCAGGAATTGGTTTGATTCTCTGAGCTCTCTCCCAAACATTCTTCCATCCACTTCCCGATTTCCTCAAACTGCACGTTCCAATCCAGATGTATATACCCAAACAACCTCTGCTCTCTCCATATATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16230</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>345339</contig_pos>
        <strand>+</strand>
        <context>TTTGAACCTT[C/T]GATCTTTTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGATCTCTGTTTCGGTCCCAAAATTCCACTCTTGTTATTTTGAACCTT</left_flank>
        <right_flank>GATCTTTTTACCAGGAATTGGTTTGATTCTCTGAGCTCTCTCCCAAACAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCGTCTAAGTAACCGACTGGATAACTTATTAGGTTGTGGGACCATCTGGGGATTTTCCCTGGTGGTCTTCGAGTGATGACGAGGACCCACACGATGATACACTACACCGCACGGCGTTAGCACGCCGAACATCGCTGGAGGACCAGCAACGACAAGGAAGGAGCGATTAAAGGAAGGGTTTATGATAAATGTACTGTTTTGAATTGAAATCTGAAAGAATACATAATTTTTTTTCCATTTTAGCTTTTATGTCGCTCCTTATAATTCGACTCATTTATATTCTATGAGTTTATTAAAGTTAATTGATTTTTTTGTATTTTTCTATCGAAAATGAGTAGGGAAAGACAGATGGGATTTGGAAATTTCAAAATTGTGAGATTCAGCAATTTGAAAATTCAACCAAATTTAAAGATTGATCTTCCCTCTTCCCCATGATACCCATTCATGTTTTGATCTCTGTTTCGGTCCCAAAATTCCACTCTTGTTATTTTGAACCTTCGATCTTTTTACCAGGAATTGGTTTGATTCTCTGAGCTCTCTCCCAAACATTCTTCCATCCACTTCCCGATTTCCTCAAACTGCACGTTCCAATCCAGATGTATATACCCAAACAACCTCTGCTCTCTCCATATATAGTAAACTCTACGTAGGCAATGTCCATGAATGTGTGACTCTGTGGTGTAACACACATTAACACGATTAAATTTTCGAAAAAAAGAATATCTTCCAAGAATCGCAAACACGCTTCCTCTCCAATTCAGAATTTCCGAGTACCGTAGGAAAATTATTTTGCAAGAAGCGTTTCATTTTTCTTACTCCAACTCCATGGGGGGCACCAGGAGCAGACATATACAACAATTGAGCACGGGAATTCTGGACCTGAACATCTATTTCTGTCTCTCGATGATGTTCATAAAGAAAACTTTTTCGGGTTGGGAAAACAAGTTTGTGTGTTGGTCGTGTTCCAATTTTTATATTGAACTTTTTCGTAGCTTGAAA</canonical>
            <polymorphic>AGCGTCTAAGTAACCGACTGGATAACTTATTAGGTTGTGGGACCATCTGGGGATTTTCCCTGGTGGTCTTCGAGTGATGACGAGGACCCACACGATGATACACTACACCGCACGGCGTTAGCACGCCGAACATCGCTGGAGGACCAGCAACGACAAGGAAGGAGCGATTAAAGGAAGGGTTTATGATAAATGTACTGTTTTGAATTGAAATCTGAAAGAATACATAATTTTTTTTCCATTTTAGCTTTTATGTCGCTCCTTATAATTCGACTCATTTATATTCTATGAGTTTATTAAAGTTAATTGATTTTTTTGTATTTTTCTATCGAAAATGAGTAGGGAAAGACAGATGGGATTTGGAAATTTCAAAATTGTGAGATTCAGCAATTTGAAAATTCAACCAAATTTAAAGATTGATCTTCCCTCTTCCCCATGATACCCATTCATGTTTTGATCTCTGTTTCGGTCCCAAAATTCCACTCTTGTTATTTTGAACCTTYGATCTTTTTACCAGGAATTGGTTTGATTCTCTGAGCTCTCTCCCAAACATTCTTCCATCCACTTCCCGATTTCCTCAAACTGCACGTTCCAATCCAGATGTATATACCCAAACAACCTCTGCTCTCTCCATATATAGTAAACTCTACGTAGGCAATGTCCATGAATGTGTGACTCTGTGGTGTAACACACATTAACACGATTAAATTTTCGAAAAAAAGAATATCTTCCAAGAATCGCAAACACGCTTCCTCTCCAATTCAGAATTTCCGAGTACCGTAGGAAAATTATTTTGCAAGAAGCGTTTCATTTTTCTTACTCCAACTCCATGGGGGGCACCAGGAGCAGACATATACAACAATTGAGCACGGGAATTCTGGACCTGAACATCTATTTCTGTCTCTCGATGATGTTCATAAAGAAAACTTTTTCGGGTTGGGAAAACAAGTTTGTGTGTTGGTCGTGTTCCAATTTTTATATTGAACTTTTTCGTAGCTTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>210 197 193 173 97 71 59</canonical_bands>
                <polymorphic_bands>383 197 193 97 71 59</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTCAACCAAATTTAAAGA</pcr_primer_p1>
		<pcr_primer_p2>CTATATATGGAGAGAGCAGAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTCAACCAAATTTAAAGATTGATCTTCCCTCTTCCCCATGATACCCATTCATGTTTTGATCTCTGTTTCGGTCCCAAAATTCCACTCTTGTTATTTTGAACCTTCGATCTTTTTACCAGGAATTGGTTTGATTCTCTGAGCTCTCTCCCAAACATTCTTCCATCCACTTCCCGATTTCCTCAAACTGCACGTTCCAATCCAGATGTATATACCCAAACAACCTCTGCTCTCTCCATATATAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTCAACCAAATTTAAAGATTGATCTTCCCTCTTCCCCATGATACCCATTCATGTTTTGATCTCTGTTTCGGTCCCAAAATTCCACTCTTGTTATTTTGAACCTTYGATCTTTTTACCAGGAATTGGTTTGATTCTCTGAGCTCTCTCCCAAACATTCTTCCATCCACTTCCCGATTTCCTCAAACTGCACGTTCCAATCCAGATGTATATACCCAAACAACCTCTGCTCTCTCCATATATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16231</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>345354</contig_pos>
        <strand>+</strand>
        <context>TTTTTACCAG[A/G]AATTGGTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTCCCAAAATTCCACTCTTGTTATTTTGAACCTTCGATCTTTTTACCAG</left_flank>
        <right_flank>AATTGGTTTGATTCTCTGAGCTCTCTCCCAAACATTCTTCCATCCACTTC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACTGGATAACTTATTAGGTTGTGGGACCATCTGGGGATTTTCCCTGGTGGTCTTCGAGTGATGACGAGGACCCACACGATGATACACTACACCGCACGGCGTTAGCACGCCGAACATCGCTGGAGGACCAGCAACGACAAGGAAGGAGCGATTAAAGGAAGGGTTTATGATAAATGTACTGTTTTGAATTGAAATCTGAAAGAATACATAATTTTTTTTCCATTTTAGCTTTTATGTCGCTCCTTATAATTCGACTCATTTATATTCTATGAGTTTATTAAAGTTAATTGATTTTTTTGTATTTTTCTATCGAAAATGAGTAGGGAAAGACAGATGGGATTTGGAAATTTCAAAATTGTGAGATTCAGCAATTTGAAAATTCAACCAAATTTAAAGATTGATCTTCCCTCTTCCCCATGATACCCATTCATGTTTTGATCTCTGTTTCGGTCCCAAAATTCCACTCTTGTTATTTTGAACCTTCGATCTTTTTACCAGGAATTGGTTTGATTCTCTGAGCTCTCTCCCAAACATTCTTCCATCCACTTCCCGATTTCCTCAAACTGCACGTTCCAATCCAGATGTATATACCCAAACAACCTCTGCTCTCTCCATATATAGTAAACTCTACGTAGGCAATGTCCATGAATGTGTGACTCTGTGGTGTAACACACATTAACACGATTAAATTTTCGAAAAAAAGAATATCTTCCAAGAATCGCAAACACGCTTCCTCTCCAATTCAGAATTTCCGAGTACCGTAGGAAAATTATTTTGCAAGAAGCGTTTCATTTTTCTTACTCCAACTCCATGGGGGGCACCAGGAGCAGACATATACAACAATTGAGCACGGGAATTCTGGACCTGAACATCTATTTCTGTCTCTCGATGATGTTCATAAAGAAAACTTTTTCGGGTTGGGAAAACAAGTTTGTGTGTTGGTCGTGTTCCAATTTTTATATTGAACTTTTTCGTAGCTTGAAATTCGGCTCATGACTT</canonical>
            <polymorphic>GACTGGATAACTTATTAGGTTGTGGGACCATCTGGGGATTTTCCCTGGTGGTCTTCGAGTGATGACGAGGACCCACACGATGATACACTACACCGCACGGCGTTAGCACGCCGAACATCGCTGGAGGACCAGCAACGACAAGGAAGGAGCGATTAAAGGAAGGGTTTATGATAAATGTACTGTTTTGAATTGAAATCTGAAAGAATACATAATTTTTTTTCCATTTTAGCTTTTATGTCGCTCCTTATAATTCGACTCATTTATATTCTATGAGTTTATTAAAGTTAATTGATTTTTTTGTATTTTTCTATCGAAAATGAGTAGGGAAAGACAGATGGGATTTGGAAATTTCAAAATTGTGAGATTCAGCAATTTGAAAATTCAACCAAATTTAAAGATTGATCTTCCCTCTTCCCCATGATACCCATTCATGTTTTGATCTCTGTTTCGGTCCCAAAATTCCACTCTTGTTATTTTGAACCTTCGATCTTTTTACCAGRAATTGGTTTGATTCTCTGAGCTCTCTCCCAAACATTCTTCCATCCACTTCCCGATTTCCTCAAACTGCACGTTCCAATCCAGATGTATATACCCAAACAACCTCTGCTCTCTCCATATATAGTAAACTCTACGTAGGCAATGTCCATGAATGTGTGACTCTGTGGTGTAACACACATTAACACGATTAAATTTTCGAAAAAAAGAATATCTTCCAAGAATCGCAAACACGCTTCCTCTCCAATTCAGAATTTCCGAGTACCGTAGGAAAATTATTTTGCAAGAAGCGTTTCATTTTTCTTACTCCAACTCCATGGGGGGCACCAGGAGCAGACATATACAACAATTGAGCACGGGAATTCTGGACCTGAACATCTATTTCTGTCTCTCGATGATGTTCATAAAGAAAACTTTTTCGGGTTGGGAAAACAAGTTTGTGTGTTGGTCGTGTTCCAATTTTTATATTGAACTTTTTCGTAGCTTGAAATTCGGCTCATGACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>452 326 177 45</canonical_bands>
                <polymorphic_bands>778 177 45</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>452 326 177 45</canonical_bands>
                <polymorphic_bands>778 177 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTCAACCAAATTTAAAGA</pcr_primer_p1>
		<pcr_primer_p2>CTATATATGGAGAGAGCAGAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTCAACCAAATTTAAAGATTGATCTTCCCTCTTCCCCATGATACCCATTCATGTTTTGATCTCTGTTTCGGTCCCAAAATTCCACTCTTGTTATTTTGAACCTTCGATCTTTTTACCAGGAATTGGTTTGATTCTCTGAGCTCTCTCCCAAACATTCTTCCATCCACTTCCCGATTTCCTCAAACTGCACGTTCCAATCCAGATGTATATACCCAAACAACCTCTGCTCTCTCCATATATAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTCAACCAAATTTAAAGATTGATCTTCCCTCTTCCCCATGATACCCATTCATGTTTTGATCTCTGTTTCGGTCCCAAAATTCCACTCTTGTTATTTTGAACCTTCGATCTTTTTACCAGRAATTGGTTTGATTCTCTGAGCTCTCTCCCAAACATTCTTCCATCCACTTCCCGATTTCCTCAAACTGCACGTTCCAATCCAGATGTATATACCCAAACAACCTCTGCTCTCTCCATATATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16232</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>345365</contig_pos>
        <strand>+</strand>
        <context>AATTGGTTTG[A/G]TTCTCTGAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCACTCTTGTTATTTTGAACCTTCGATCTTTTTACCAGGAATTGGTTTG</left_flank>
        <right_flank>TTCTCTGAGCTCTCTCCCAAACATTCTTCCATCCACTTCCCGATTTCCTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATTAGGTTGTGGGACCATCTGGGGATTTTCCCTGGTGGTCTTCGAGTGATGACGAGGACCCACACGATGATACACTACACCGCACGGCGTTAGCACGCCGAACATCGCTGGAGGACCAGCAACGACAAGGAAGGAGCGATTAAAGGAAGGGTTTATGATAAATGTACTGTTTTGAATTGAAATCTGAAAGAATACATAATTTTTTTTCCATTTTAGCTTTTATGTCGCTCCTTATAATTCGACTCATTTATATTCTATGAGTTTATTAAAGTTAATTGATTTTTTTGTATTTTTCTATCGAAAATGAGTAGGGAAAGACAGATGGGATTTGGAAATTTCAAAATTGTGAGATTCAGCAATTTGAAAATTCAACCAAATTTAAAGATTGATCTTCCCTCTTCCCCATGATACCCATTCATGTTTTGATCTCTGTTTCGGTCCCAAAATTCCACTCTTGTTATTTTGAACCTTCGATCTTTTTACCAGGAATTGGTTTGATTCTCTGAGCTCTCTCCCAAACATTCTTCCATCCACTTCCCGATTTCCTCAAACTGCACGTTCCAATCCAGATGTATATACCCAAACAACCTCTGCTCTCTCCATATATAGTAAACTCTACGTAGGCAATGTCCATGAATGTGTGACTCTGTGGTGTAACACACATTAACACGATTAAATTTTCGAAAAAAAGAATATCTTCCAAGAATCGCAAACACGCTTCCTCTCCAATTCAGAATTTCCGAGTACCGTAGGAAAATTATTTTGCAAGAAGCGTTTCATTTTTCTTACTCCAACTCCATGGGGGGCACCAGGAGCAGACATATACAACAATTGAGCACGGGAATTCTGGACCTGAACATCTATTTCTGTCTCTCGATGATGTTCATAAAGAAAACTTTTTCGGGTTGGGAAAACAAGTTTGTGTGTTGGTCGTGTTCCAATTTTTATATTGAACTTTTTCGTAGCTTGAAATTCGGCTCATGACTTTGAAATCATAT</canonical>
            <polymorphic>TTATTAGGTTGTGGGACCATCTGGGGATTTTCCCTGGTGGTCTTCGAGTGATGACGAGGACCCACACGATGATACACTACACCGCACGGCGTTAGCACGCCGAACATCGCTGGAGGACCAGCAACGACAAGGAAGGAGCGATTAAAGGAAGGGTTTATGATAAATGTACTGTTTTGAATTGAAATCTGAAAGAATACATAATTTTTTTTCCATTTTAGCTTTTATGTCGCTCCTTATAATTCGACTCATTTATATTCTATGAGTTTATTAAAGTTAATTGATTTTTTTGTATTTTTCTATCGAAAATGAGTAGGGAAAGACAGATGGGATTTGGAAATTTCAAAATTGTGAGATTCAGCAATTTGAAAATTCAACCAAATTTAAAGATTGATCTTCCCTCTTCCCCATGATACCCATTCATGTTTTGATCTCTGTTTCGGTCCCAAAATTCCACTCTTGTTATTTTGAACCTTCGATCTTTTTACCAGGAATTGGTTTGRTTCTCTGAGCTCTCTCCCAAACATTCTTCCATCCACTTCCCGATTTCCTCAAACTGCACGTTCCAATCCAGATGTATATACCCAAACAACCTCTGCTCTCTCCATATATAGTAAACTCTACGTAGGCAATGTCCATGAATGTGTGACTCTGTGGTGTAACACACATTAACACGATTAAATTTTCGAAAAAAAGAATATCTTCCAAGAATCGCAAACACGCTTCCTCTCCAATTCAGAATTTCCGAGTACCGTAGGAAAATTATTTTGCAAGAAGCGTTTCATTTTTCTTACTCCAACTCCATGGGGGGCACCAGGAGCAGACATATACAACAATTGAGCACGGGAATTCTGGACCTGAACATCTATTTCTGTCTCTCGATGATGTTCATAAAGAAAACTTTTTCGGGTTGGGAAAACAAGTTTGTGTGTTGGTCGTGTTCCAATTTTTATATTGAACTTTTTCGTAGCTTGAAATTCGGCTCATGACTTTGAAATCATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>294 243 147 146 109 61</canonical_bands>
                <polymorphic_bands>294 293 243 109 61</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>352 294 207 147</canonical_bands>
                <polymorphic_bands>354 352 294</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTCAACCAAATTTAAAGA</pcr_primer_p1>
		<pcr_primer_p2>CTATATATGGAGAGAGCAGAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTCAACCAAATTTAAAGATTGATCTTCCCTCTTCCCCATGATACCCATTCATGTTTTGATCTCTGTTTCGGTCCCAAAATTCCACTCTTGTTATTTTGAACCTTCGATCTTTTTACCAGGAATTGGTTTGATTCTCTGAGCTCTCTCCCAAACATTCTTCCATCCACTTCCCGATTTCCTCAAACTGCACGTTCCAATCCAGATGTATATACCCAAACAACCTCTGCTCTCTCCATATATAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTCAACCAAATTTAAAGATTGATCTTCCCTCTTCCCCATGATACCCATTCATGTTTTGATCTCTGTTTCGGTCCCAAAATTCCACTCTTGTTATTTTGAACCTTCGATCTTTTTACCAGGAATTGGTTTGRTTCTCTGAGCTCTCTCCCAAACATTCTTCCATCCACTTCCCGATTTCCTCAAACTGCACGTTCCAATCCAGATGTATATACCCAAACAACCTCTGCTCTCTCCATATATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16233</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>345419</contig_pos>
        <strand>+</strand>
        <context>TTTCCTCAAA[C/T]TGCACGTTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTGAGCTCTCTCCCAAACATTCTTCCATCCACTTCCCGATTTCCTCAAA</left_flank>
        <right_flank>TGCACGTTCCAATCCAGATGTATATACCCAAACAACCTCTGCTCTCTCCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGGACCCACACGATGATACACTACACCGCACGGCGTTAGCACGCCGAACATCGCTGGAGGACCAGCAACGACAAGGAAGGAGCGATTAAAGGAAGGGTTTATGATAAATGTACTGTTTTGAATTGAAATCTGAAAGAATACATAATTTTTTTTCCATTTTAGCTTTTATGTCGCTCCTTATAATTCGACTCATTTATATTCTATGAGTTTATTAAAGTTAATTGATTTTTTTGTATTTTTCTATCGAAAATGAGTAGGGAAAGACAGATGGGATTTGGAAATTTCAAAATTGTGAGATTCAGCAATTTGAAAATTCAACCAAATTTAAAGATTGATCTTCCCTCTTCCCCATGATACCCATTCATGTTTTGATCTCTGTTTCGGTCCCAAAATTCCACTCTTGTTATTTTGAACCTTCGATCTTTTTACCAGGAATTGGTTTGATTCTCTGAGCTCTCTCCCAAACATTCTTCCATCCACTTCCCGATTTCCTCAAACTGCACGTTCCAATCCAGATGTATATACCCAAACAACCTCTGCTCTCTCCATATATAGTAAACTCTACGTAGGCAATGTCCATGAATGTGTGACTCTGTGGTGTAACACACATTAACACGATTAAATTTTCGAAAAAAAGAATATCTTCCAAGAATCGCAAACACGCTTCCTCTCCAATTCAGAATTTCCGAGTACCGTAGGAAAATTATTTTGCAAGAAGCGTTTCATTTTTCTTACTCCAACTCCATGGGGGGCACCAGGAGCAGACATATACAACAATTGAGCACGGGAATTCTGGACCTGAACATCTATTTCTGTCTCTCGATGATGTTCATAAAGAAAACTTTTTCGGGTTGGGAAAACAAGTTTGTGTGTTGGTCGTGTTCCAATTTTTATATTGAACTTTTTCGTAGCTTGAAATTCGGCTCATGACTTTGAAATCATATTTTGGTCTGCATTATCCTTTCAAGCTCAGCTAACCGCCGCCAAAAGATGCTTAC</canonical>
            <polymorphic>CGAGGACCCACACGATGATACACTACACCGCACGGCGTTAGCACGCCGAACATCGCTGGAGGACCAGCAACGACAAGGAAGGAGCGATTAAAGGAAGGGTTTATGATAAATGTACTGTTTTGAATTGAAATCTGAAAGAATACATAATTTTTTTTCCATTTTAGCTTTTATGTCGCTCCTTATAATTCGACTCATTTATATTCTATGAGTTTATTAAAGTTAATTGATTTTTTTGTATTTTTCTATCGAAAATGAGTAGGGAAAGACAGATGGGATTTGGAAATTTCAAAATTGTGAGATTCAGCAATTTGAAAATTCAACCAAATTTAAAGATTGATCTTCCCTCTTCCCCATGATACCCATTCATGTTTTGATCTCTGTTTCGGTCCCAAAATTCCACTCTTGTTATTTTGAACCTTCGATCTTTTTACCAGGAATTGGTTTGATTCTCTGAGCTCTCTCCCAAACATTCTTCCATCCACTTCCCGATTTCCTCAAAYTGCACGTTCCAATCCAGATGTATATACCCAAACAACCTCTGCTCTCTCCATATATAGTAAACTCTACGTAGGCAATGTCCATGAATGTGTGACTCTGTGGTGTAACACACATTAACACGATTAAATTTTCGAAAAAAAGAATATCTTCCAAGAATCGCAAACACGCTTCCTCTCCAATTCAGAATTTCCGAGTACCGTAGGAAAATTATTTTGCAAGAAGCGTTTCATTTTTCTTACTCCAACTCCATGGGGGGCACCAGGAGCAGACATATACAACAATTGAGCACGGGAATTCTGGACCTGAACATCTATTTCTGTCTCTCGATGATGTTCATAAAGAAAACTTTTTCGGGTTGGGAAAACAAGTTTGTGTGTTGGTCGTGTTCCAATTTTTATATTGAACTTTTTCGTAGCTTGAAATTCGGCTCATGACTTTGAAATCATATTTTGGTCTGCATTATCCTTTCAAGCTCAGCTAACCGCCGCCAAAAGATGCTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTCAACCAAATTTAAAGA</pcr_primer_p1>
		<pcr_primer_p2>CTATATATGGAGAGAGCAGAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTCAACCAAATTTAAAGATTGATCTTCCCTCTTCCCCATGATACCCATTCATGTTTTGATCTCTGTTTCGGTCCCAAAATTCCACTCTTGTTATTTTGAACCTTCGATCTTTTTACCAGGAATTGGTTTGATTCTCTGAGCTCTCTCCCAAACATTCTTCCATCCACTTCCCGATTTCCTCAAACTGCACGTTCCAATCCAGATGTATATACCCAAACAACCTCTGCTCTCTCCATATATAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTCAACCAAATTTAAAGATTGATCTTCCCTCTTCCCCATGATACCCATTCATGTTTTGATCTCTGTTTCGGTCCCAAAATTCCACTCTTGTTATTTTGAACCTTCGATCTTTTTACCAGGAATTGGTTTGATTCTCTGAGCTCTCTCCCAAACATTCTTCCATCCACTTCCCGATTTCCTCAAAYTGCACGTTCCAATCCAGATGTATATACCCAAACAACCTCTGCTCTCTCCATATATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16234</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>345496</contig_pos>
        <strand>+</strand>
        <context>CGTAGGCAAT[A/G]TCCATGAATG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCAAACAACCTCTGCTCTCTCCATATATAGTAAACTCTACGTAGGCAAT</left_flank>
        <right_flank>TCCATGAATGTGTGACTCTGTGGTGTAACACACATTAACACGATTAAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGGAGCGATTAAAGGAAGGGTTTATGATAAATGTACTGTTTTGAATTGAAATCTGAAAGAATACATAATTTTTTTTCCATTTTAGCTTTTATGTCGCTCCTTATAATTCGACTCATTTATATTCTATGAGTTTATTAAAGTTAATTGATTTTTTTGTATTTTTCTATCGAAAATGAGTAGGGAAAGACAGATGGGATTTGGAAATTTCAAAATTGTGAGATTCAGCAATTTGAAAATTCAACCAAATTTAAAGATTGATCTTCCCTCTTCCCCATGATACCCATTCATGTTTTGATCTCTGTTTCGGTCCCAAAATTCCACTCTTGTTATTTTGAACCTTCGATCTTTTTACCAGGAATTGGTTTGATTCTCTGAGCTCTCTCCCAAACATTCTTCCATCCACTTCCCGATTTCCTCAAACTGCACGTTCCAATCCAGATGTATATACCCAAACAACCTCTGCTCTCTCCATATATAGTAAACTCTACGTAGGCAATGTCCATGAATGTGTGACTCTGTGGTGTAACACACATTAACACGATTAAATTTTCGAAAAAAAGAATATCTTCCAAGAATCGCAAACACGCTTCCTCTCCAATTCAGAATTTCCGAGTACCGTAGGAAAATTATTTTGCAAGAAGCGTTTCATTTTTCTTACTCCAACTCCATGGGGGGCACCAGGAGCAGACATATACAACAATTGAGCACGGGAATTCTGGACCTGAACATCTATTTCTGTCTCTCGATGATGTTCATAAAGAAAACTTTTTCGGGTTGGGAAAACAAGTTTGTGTGTTGGTCGTGTTCCAATTTTTATATTGAACTTTTTCGTAGCTTGAAATTCGGCTCATGACTTTGAAATCATATTTTGGTCTGCATTATCCTTTCAAGCTCAGCTAACCGCCGCCAAAAGATGCTTACTACGAAAGTACCCTAGCAGTAAGTCCTCGGATAGAACCAACCAAATACGTGCACTTTGAGCTCAATTATCTCGGTTA</canonical>
            <polymorphic>GAAGGAGCGATTAAAGGAAGGGTTTATGATAAATGTACTGTTTTGAATTGAAATCTGAAAGAATACATAATTTTTTTTCCATTTTAGCTTTTATGTCGCTCCTTATAATTCGACTCATTTATATTCTATGAGTTTATTAAAGTTAATTGATTTTTTTGTATTTTTCTATCGAAAATGAGTAGGGAAAGACAGATGGGATTTGGAAATTTCAAAATTGTGAGATTCAGCAATTTGAAAATTCAACCAAATTTAAAGATTGATCTTCCCTCTTCCCCATGATACCCATTCATGTTTTGATCTCTGTTTCGGTCCCAAAATTCCACTCTTGTTATTTTGAACCTTCGATCTTTTTACCAGGAATTGGTTTGATTCTCTGAGCTCTCTCCCAAACATTCTTCCATCCACTTCCCGATTTCCTCAAACTGCACGTTCCAATCCAGATGTATATACCCAAACAACCTCTGCTCTCTCCATATATAGTAAACTCTACGTAGGCAATRTCCATGAATGTGTGACTCTGTGGTGTAACACACATTAACACGATTAAATTTTCGAAAAAAAGAATATCTTCCAAGAATCGCAAACACGCTTCCTCTCCAATTCAGAATTTCCGAGTACCGTAGGAAAATTATTTTGCAAGAAGCGTTTCATTTTTCTTACTCCAACTCCATGGGGGGCACCAGGAGCAGACATATACAACAATTGAGCACGGGAATTCTGGACCTGAACATCTATTTCTGTCTCTCGATGATGTTCATAAAGAAAACTTTTTCGGGTTGGGAAAACAAGTTTGTGTGTTGGTCGTGTTCCAATTTTTATATTGAACTTTTTCGTAGCTTGAAATTCGGCTCATGACTTTGAAATCATATTTTGGTCTGCATTATCCTTTCAAGCTCAGCTAACCGCCGCCAAAAGATGCTTACTACGAAAGTACCCTAGCAGTAAGTCCTCGGATAGAACCAACCAAATACGTGCACTTTGAGCTCAATTATCTCGGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCAGATGTATATACCCAAACA</pcr_primer_p1>
		<pcr_primer_p2>GAGTTGGAGTAAGAAAAATGAAA</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>ATCCAGATGTATATACCCAAACAACCTCTGCTCTCTCCATATATAGTAAACTCTACGTAGGCAATGTCCATGAATGTGTGACTCTGTGGTGTAACACACATTAACACGATTAAATTTTCGAAAAAAAGAATATCTTCCAAGAATCGCAAACACGCTTCCTCTCCAATTCAGAATTTCCGAGTACCGTAGGAAAATTATTTTGCAAGAAGCGTTTCATTTTTCTTACTCCAACTC</canonical_amplicon>
		<polymorphic_amplicon>ATCCAGATGTATATACCCAAACAACCTCTGCTCTCTCCATATATAGTAAACTCTACGTAGGCAATRTCCATGAATGTGTGACTCTGTGGTGTAACACACATTAACACGATTAAATTTTCGAAAAAAAGAATATCTTCCAAGAATCGCAAACACGCTTCCTCTCCAATTCAGAATTTCCGAGTACCGTAGGAAAATTATTTTGCAAGAAGCGTTTCATTTTTCTTACTCCAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16235</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>345550</contig_pos>
        <strand>+</strand>
        <context>TTAAATTTTC[G/T]AAAAAAAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGAATGTGTGACTCTGTGGTGTAACACACATTAACACGATTAAATTTTC</left_flank>
        <right_flank>AAAAAAAGAATATCTTCCAAGAATCGCAAACACGCTTCCTCTCCAATTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAAAGAATACATAATTTTTTTTCCATTTTAGCTTTTATGTCGCTCCTTATAATTCGACTCATTTATATTCTATGAGTTTATTAAAGTTAATTGATTTTTTTGTATTTTTCTATCGAAAATGAGTAGGGAAAGACAGATGGGATTTGGAAATTTCAAAATTGTGAGATTCAGCAATTTGAAAATTCAACCAAATTTAAAGATTGATCTTCCCTCTTCCCCATGATACCCATTCATGTTTTGATCTCTGTTTCGGTCCCAAAATTCCACTCTTGTTATTTTGAACCTTCGATCTTTTTACCAGGAATTGGTTTGATTCTCTGAGCTCTCTCCCAAACATTCTTCCATCCACTTCCCGATTTCCTCAAACTGCACGTTCCAATCCAGATGTATATACCCAAACAACCTCTGCTCTCTCCATATATAGTAAACTCTACGTAGGCAATGTCCATGAATGTGTGACTCTGTGGTGTAACACACATTAACACGATTAAATTTTCGAAAAAAAGAATATCTTCCAAGAATCGCAAACACGCTTCCTCTCCAATTCAGAATTTCCGAGTACCGTAGGAAAATTATTTTGCAAGAAGCGTTTCATTTTTCTTACTCCAACTCCATGGGGGGCACCAGGAGCAGACATATACAACAATTGAGCACGGGAATTCTGGACCTGAACATCTATTTCTGTCTCTCGATGATGTTCATAAAGAAAACTTTTTCGGGTTGGGAAAACAAGTTTGTGTGTTGGTCGTGTTCCAATTTTTATATTGAACTTTTTCGTAGCTTGAAATTCGGCTCATGACTTTGAAATCATATTTTGGTCTGCATTATCCTTTCAAGCTCAGCTAACCGCCGCCAAAAGATGCTTACTACGAAAGTACCCTAGCAGTAAGTCCTCGGATAGAACCAACCAAATACGTGCACTTTGAGCTCAATTATCTCGGTTACATTAAAAGATATCAAAATTTTATCAACTGATAAAATATTGGTGATATTATGAT</canonical>
            <polymorphic>CTGAAAGAATACATAATTTTTTTTCCATTTTAGCTTTTATGTCGCTCCTTATAATTCGACTCATTTATATTCTATGAGTTTATTAAAGTTAATTGATTTTTTTGTATTTTTCTATCGAAAATGAGTAGGGAAAGACAGATGGGATTTGGAAATTTCAAAATTGTGAGATTCAGCAATTTGAAAATTCAACCAAATTTAAAGATTGATCTTCCCTCTTCCCCATGATACCCATTCATGTTTTGATCTCTGTTTCGGTCCCAAAATTCCACTCTTGTTATTTTGAACCTTCGATCTTTTTACCAGGAATTGGTTTGATTCTCTGAGCTCTCTCCCAAACATTCTTCCATCCACTTCCCGATTTCCTCAAACTGCACGTTCCAATCCAGATGTATATACCCAAACAACCTCTGCTCTCTCCATATATAGTAAACTCTACGTAGGCAATGTCCATGAATGTGTGACTCTGTGGTGTAACACACATTAACACGATTAAATTTTCKAAAAAAAGAATATCTTCCAAGAATCGCAAACACGCTTCCTCTCCAATTCAGAATTTCCGAGTACCGTAGGAAAATTATTTTGCAAGAAGCGTTTCATTTTTCTTACTCCAACTCCATGGGGGGCACCAGGAGCAGACATATACAACAATTGAGCACGGGAATTCTGGACCTGAACATCTATTTCTGTCTCTCGATGATGTTCATAAAGAAAACTTTTTCGGGTTGGGAAAACAAGTTTGTGTGTTGGTCGTGTTCCAATTTTTATATTGAACTTTTTCGTAGCTTGAAATTCGGCTCATGACTTTGAAATCATATTTTGGTCTGCATTATCCTTTCAAGCTCAGCTAACCGCCGCCAAAAGATGCTTACTACGAAAGTACCCTAGCAGTAAGTCCTCGGATAGAACCAACCAAATACGTGCACTTTGAGCTCAATTATCTCGGTTACATTAAAAGATATCAAAATTTTATCAACTGATAAAATATTGGTGATATTATGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>308 210 193 173 59 57</canonical_bands>
                <polymorphic_bands>403 308 173 59 57</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAATGTGTGACTCTGTGGT</pcr_primer_p1>
		<pcr_primer_p2>ACATCATCGAGAGACAGAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATGAATGTGTGACTCTGTGGTGTAACACACATTAACACGATTAAATTTTCGAAAAAAAGAATATCTTCCAAGAATCGCAAACACGCTTCCTCTCCAATTCAGAATTTCCGAGTACCGTAGGAAAATTATTTTGCAAGAAGCGTTTCATTTTTCTTACTCCAACTCCATGGGGGGCACCAGGAGCAGACATATACAACAATTGAGCACGGGAATTCTGGACCTGAACATCTATTTCTGTCTCTCGATGATGT</canonical_amplicon>
		<polymorphic_amplicon>ATGAATGTGTGACTCTGTGGTGTAACACACATTAACACGATTAAATTTTCKAAAAAAAGAATATCTTCCAAGAATCGCAAACACGCTTCCTCTCCAATTCAGAATTTCCGAGTACCGTAGGAAAATTATTTTGCAAGAAGCGTTTCATTTTTCTTACTCCAACTCCATGGGGGGCACCAGGAGCAGACATATACAACAATTGAGCACGGGAATTCTGGACCTGAACATCTATTTCTGTCTCTCGATGATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16236</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>350286</contig_pos>
        <strand>+</strand>
        <context>TATTATTTTG[A/G]TAGAATAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTATATTCGGATTAGTTTTCTTTTCAAAAGTATTCATCTTATTATTTTG</left_flank>
        <right_flank>TAGAATAATTCGGACCTATGGAAGAGAATATAACAAATCACTATCTCATT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCACTATATTTACCAAAACTTCAGTTTCTCAGAACTTACTTTTTTTGAAATCCACCATCACCATCACCACTACACATTTTTGATCCACACAATAGAATATTCTGAGAGGCCATTCTTTTGTTGTATATCATAAGCCAGACATAATAAAAAAGGAAATGTGTGGTATATTTTTTTTGGGTTCTTGAAGTGAAAAGAGAAAAAAAGAACTTTTGACTGGGTGTTTTGAATCGAAATTGAAATTTATCGAACATCGTAAATCCAGAATGACAAAGATTGTACGGATTTAAATTTTGAGGTTCATCGAACACTAGGAAATAGATTTTTTAATTATAGAATTCAAAGAGTTCCTAAGTTCAGAAGATCTTCAGAATCACTGGATGTTTAGGTCTAGATTTTAGGTTTAAGTATTCCAAAATTCGAAAATACTGATTTTGAAAATTTCTGAGATTTTATATTCGGATTAGTTTTCTTTTCAAAAGTATTCATCTTATTATTTTGATAGAATAATTCGGACCTATGGAAGAGAATATAACAAATCACTATCTCATTTGTTACTGTGCCTAGTCATTTAATCTGTATTTTTTAATGAACCTGTCAACTTTGAGCCTATTTTTCTCGTTTCATGTAAGAGAGTTTTGAAATTTTTAACGCATAAAATATTTTTCTCATTTAAGTGAACATTTTTCAATTTACAACTTTTCGATATCTTTTTCAGAAAACGAGAGAAACTGGCTCAATCTTTTCTGGGGCTTCTATCGGAGGAAACTTGGTGTCTTCCCACCCGAACCCATTGAAGTCCAGACATCCAAACAACTTCTGATCCCATCTTCCTCGTCATGGAATTCCATTTCTAGCCCCTCGTTGCCATTTCTTACATTTCAAAGTACCCCTATACGAATTCTCTAGAGATGGACCACTGGGTGATATATGGGTGCCTACTTATTTCAATTCTTGCGTGACCAAGTTTGGACCCCATCATTTGGCAGCTCTATCATGAGA</canonical>
            <polymorphic>ATCACTATATTTACCAAAACTTCAGTTTCTCAGAACTTACTTTTTTTGAAATCCACCATCACCATCACCACTACACATTTTTGATCCACACAATAGAATATTCTGAGAGGCCATTCTTTTGTTGTATATCATAAGCCAGACATAATAAAAAAGGAAATGTGTGGTATATTTTTTTTGGGTTCTTGAAGTGAAAAGAGAAAAAAAGAACTTTTGACTGGGTGTTTTGAATCGAAATTGAAATTTATCGAACATCGTAAATCCAGAATGACAAAGATTGTACGGATTTAAATTTTGAGGTTCATCGAACACTAGGAAATAGATTTTTTAATTATAGAATTCAAAGAGTTCCTAAGTTCAGAAGATCTTCAGAATCACTGGATGTTTAGGTCTAGATTTTAGGTTTAAGTATTCCAAAATTCGAAAATACTGATTTTGAAAATTTCTGAGATTTTATATTCGGATTAGTTTTCTTTTCAAAAGTATTCATCTTATTATTTTGRTAGAATAATTCGGACCTATGGAAGAGAATATAACAAATCACTATCTCATTTGTTACTGTGCCTAGTCATTTAATCTGTATTTTTTAATGAACCTGTCAACTTTGAGCCTATTTTTCTCGTTTCATGTAAGAGAGTTTTGAAATTTTTAACGCATAAAATATTTTTCTCATTTAAGTGAACATTTTTCAATTTACAACTTTTCGATATCTTTTTCAGAAAACGAGAGAAACTGGCTCAATCTTTTCTGGGGCTTCTATCGGAGGAAACTTGGTGTCTTCCCACCCGAACCCATTGAAGTCCAGACATCCAAACAACTTCTGATCCCATCTTCCTCGTCATGGAATTCCATTTCTAGCCCCTCGTTGCCATTTCTTACATTTCAAAGTACCCCTATACGAATTCTCTAGAGATGGACCACTGGGTGATATATGGGTGCCTACTTATTTCAATTCTTGCGTGACCAAGTTTGGACCCCATCATTTGGCAGCTCTATCATGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAAAGAGTTCCTAAGTTCAGA</pcr_primer_p1>
		<pcr_primer_p2>ACAGATTAAATGACTAGGCACAG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTCAAAGAGTTCCTAAGTTCAGAAGATCTTCAGAATCACTGGATGTTTAGGTCTAGATTTTAGGTTTAAGTATTCCAAAATTCGAAAATACTGATTTTGAAAATTTCTGAGATTTTATATTCGGATTAGTTTTCTTTTCAAAAGTATTCATCTTATTATTTTGATAGAATAATTCGGACCTATGGAAGAGAATATAACAAATCACTATCTCATTTGTTACTGTGCCTAGTCATTTAATCTGT</canonical_amplicon>
		<polymorphic_amplicon>TTCAAAGAGTTCCTAAGTTCAGAAGATCTTCAGAATCACTGGATGTTTAGGTCTAGATTTTAGGTTTAAGTATTCCAAAATTCGAAAATACTGATTTTGAAAATTTCTGAGATTTTATATTCGGATTAGTTTTCTTTTCAAAAGTATTCATCTTATTATTTTGRTAGAATAATTCGGACCTATGGAAGAGAATATAACAAATCACTATCTCATTTGTTACTGTGCCTAGTCATTTAATCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16237</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>350212</contig_pos>
        <strand>+</strand>
        <context>ATTCGAAAAT[A/T]CTGATTTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGGATGTTTAGGTCTAGATTTTAGGTTTAAGTATTCCAAAATTCGAAAAT</left_flank>
        <right_flank>CTGATTTTGAAAATTTCTGAGATTTTATATTCGGATTAGTTTTCTTTTCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGCCGAAACTTGACCCCTATTTTTCGAAAATTTTCCCCGAACAGTAGTCTAGAAATCTCTGAAATATCAGATATCACTATATTTACCAAAACTTCAGTTTCTCAGAACTTACTTTTTTTGAAATCCACCATCACCATCACCACTACACATTTTTGATCCACACAATAGAATATTCTGAGAGGCCATTCTTTTGTTGTATATCATAAGCCAGACATAATAAAAAAGGAAATGTGTGGTATATTTTTTTTGGGTTCTTGAAGTGAAAAGAGAAAAAAAGAACTTTTGACTGGGTGTTTTGAATCGAAATTGAAATTTATCGAACATCGTAAATCCAGAATGACAAAGATTGTACGGATTTAAATTTTGAGGTTCATCGAACACTAGGAAATAGATTTTTTAATTATAGAATTCAAAGAGTTCCTAAGTTCAGAAGATCTTCAGAATCACTGGATGTTTAGGTCTAGATTTTAGGTTTAAGTATTCCAAAATTCGAAAATACTGATTTTGAAAATTTCTGAGATTTTATATTCGGATTAGTTTTCTTTTCAAAAGTATTCATCTTATTATTTTGATAGAATAATTCGGACCTATGGAAGAGAATATAACAAATCACTATCTCATTTGTTACTGTGCCTAGTCATTTAATCTGTATTTTTTAATGAACCTGTCAACTTTGAGCCTATTTTTCTCGTTTCATGTAAGAGAGTTTTGAAATTTTTAACGCATAAAATATTTTTCTCATTTAAGTGAACATTTTTCAATTTACAACTTTTCGATATCTTTTTCAGAAAACGAGAGAAACTGGCTCAATCTTTTCTGGGGCTTCTATCGGAGGAAACTTGGTGTCTTCCCACCCGAACCCATTGAAGTCCAGACATCCAAACAACTTCTGATCCCATCTTCCTCGTCATGGAATTCCATTTCTAGCCCCTCGTTGCCATTTCTTACATTTCAAAGTACCCCTATACGAATTCTCTAGAGATGGACCACTGGGTGAT</canonical>
            <polymorphic>AAAGCCGAAACTTGACCCCTATTTTTCGAAAATTTTCCCCGAACAGTAGTCTAGAAATCTCTGAAATATCAGATATCACTATATTTACCAAAACTTCAGTTTCTCAGAACTTACTTTTTTTGAAATCCACCATCACCATCACCACTACACATTTTTGATCCACACAATAGAATATTCTGAGAGGCCATTCTTTTGTTGTATATCATAAGCCAGACATAATAAAAAAGGAAATGTGTGGTATATTTTTTTTGGGTTCTTGAAGTGAAAAGAGAAAAAAAGAACTTTTGACTGGGTGTTTTGAATCGAAATTGAAATTTATCGAACATCGTAAATCCAGAATGACAAAGATTGTACGGATTTAAATTTTGAGGTTCATCGAACACTAGGAAATAGATTTTTTAATTATAGAATTCAAAGAGTTCCTAAGTTCAGAAGATCTTCAGAATCACTGGATGTTTAGGTCTAGATTTTAGGTTTAAGTATTCCAAAATTCGAAAATWCTGATTTTGAAAATTTCTGAGATTTTATATTCGGATTAGTTTTCTTTTCAAAAGTATTCATCTTATTATTTTGATAGAATAATTCGGACCTATGGAAGAGAATATAACAAATCACTATCTCATTTGTTACTGTGCCTAGTCATTTAATCTGTATTTTTTAATGAACCTGTCAACTTTGAGCCTATTTTTCTCGTTTCATGTAAGAGAGTTTTGAAATTTTTAACGCATAAAATATTTTTCTCATTTAAGTGAACATTTTTCAATTTACAACTTTTCGATATCTTTTTCAGAAAACGAGAGAAACTGGCTCAATCTTTTCTGGGGCTTCTATCGGAGGAAACTTGGTGTCTTCCCACCCGAACCCATTGAAGTCCAGACATCCAAACAACTTCTGATCCCATCTTCCTCGTCATGGAATTCCATTTCTAGCCCCTCGTTGCCATTTCTTACATTTCAAAGTACCCCTATACGAATTCTCTAGAGATGGACCACTGGGTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAAAGAGTTCCTAAGTTCAGA</pcr_primer_p1>
		<pcr_primer_p2>ACAGATTAAATGACTAGGCACAG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTCAAAGAGTTCCTAAGTTCAGAAGATCTTCAGAATCACTGGATGTTTAGGTCTAGATTTTAGGTTTAAGTATTCCAAAATTCGAAAATACTGATTTTGAAAATTTCTGAGATTTTATATTCGGATTAGTTTTCTTTTCAAAAGTATTCATCTTATTATTTTGATAGAATAATTCGGACCTATGGAAGAGAATATAACAAATCACTATCTCATTTGTTACTGTGCCTAGTCATTTAATCTGT</canonical_amplicon>
		<polymorphic_amplicon>TTCAAAGAGTTCCTAAGTTCAGAAGATCTTCAGAATCACTGGATGTTTAGGTCTAGATTTTAGGTTTAAGTATTCCAAAATTCGAAAATWCTGATTTTGAAAATTTCTGAGATTTTATATTCGGATTAGTTTTCTTTTCAAAAGTATTCATCTTATTATTTTGATAGAATAATTCGGACCTATGGAAGAGAATATAACAAATCACTATCTCATTTGTTACTGTGCCTAGTCATTTAATCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16238</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>350042</contig_pos>
        <strand>+</strand>
        <context>CGAACATCGT[A/T]AATCCAGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACTTTTGACTGGGTGTTTTGAATCGAAATTGAAATTTATCGAACATCGT</left_flank>
        <right_flank>AATCCAGAATGACAAAGATTGTACGGATTTAAATTTTGAGGTTCATCGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAAAAATTGGAGAGAGAGAGAAAATGTAGAGGGTCTAAAAAGGAACCCACAAACTCTATTTTAGGTAGGGTTCGAAAGTTTGAGAGCCAAAAAAGATGCGAATGTTTTTAATTTCGGTGGCGGAAACGAAAACTTAGGAGCGAAGAATTCAAAAACAAGAAGCTCTTAAAAGCCGAAACTTGACCCCTATTTTTCGAAAATTTTCCCCGAACAGTAGTCTAGAAATCTCTGAAATATCAGATATCACTATATTTACCAAAACTTCAGTTTCTCAGAACTTACTTTTTTTGAAATCCACCATCACCATCACCACTACACATTTTTGATCCACACAATAGAATATTCTGAGAGGCCATTCTTTTGTTGTATATCATAAGCCAGACATAATAAAAAAGGAAATGTGTGGTATATTTTTTTTGGGTTCTTGAAGTGAAAAGAGAAAAAAAGAACTTTTGACTGGGTGTTTTGAATCGAAATTGAAATTTATCGAACATCGTAAATCCAGAATGACAAAGATTGTACGGATTTAAATTTTGAGGTTCATCGAACACTAGGAAATAGATTTTTTAATTATAGAATTCAAAGAGTTCCTAAGTTCAGAAGATCTTCAGAATCACTGGATGTTTAGGTCTAGATTTTAGGTTTAAGTATTCCAAAATTCGAAAATACTGATTTTGAAAATTTCTGAGATTTTATATTCGGATTAGTTTTCTTTTCAAAAGTATTCATCTTATTATTTTGATAGAATAATTCGGACCTATGGAAGAGAATATAACAAATCACTATCTCATTTGTTACTGTGCCTAGTCATTTAATCTGTATTTTTTAATGAACCTGTCAACTTTGAGCCTATTTTTCTCGTTTCATGTAAGAGAGTTTTGAAATTTTTAACGCATAAAATATTTTTCTCATTTAAGTGAACATTTTTCAATTTACAACTTTTCGATATCTTTTTCAGAAAACGAGAGAAACTGGCTCAATCTTTTCTGGGGCTTCTA</canonical>
            <polymorphic>ACCAAAAATTGGAGAGAGAGAGAAAATGTAGAGGGTCTAAAAAGGAACCCACAAACTCTATTTTAGGTAGGGTTCGAAAGTTTGAGAGCCAAAAAAGATGCGAATGTTTTTAATTTCGGTGGCGGAAACGAAAACTTAGGAGCGAAGAATTCAAAAACAAGAAGCTCTTAAAAGCCGAAACTTGACCCCTATTTTTCGAAAATTTTCCCCGAACAGTAGTCTAGAAATCTCTGAAATATCAGATATCACTATATTTACCAAAACTTCAGTTTCTCAGAACTTACTTTTTTTGAAATCCACCATCACCATCACCACTACACATTTTTGATCCACACAATAGAATATTCTGAGAGGCCATTCTTTTGTTGTATATCATAAGCCAGACATAATAAAAAAGGAAATGTGTGGTATATTTTTTTTGGGTTCTTGAAGTGAAAAGAGAAAAAAAGAACTTTTGACTGGGTGTTTTGAATCGAAATTGAAATTTATCGAACATCGTWAATCCAGAATGACAAAGATTGTACGGATTTAAATTTTGAGGTTCATCGAACACTAGGAAATAGATTTTTTAATTATAGAATTCAAAGAGTTCCTAAGTTCAGAAGATCTTCAGAATCACTGGATGTTTAGGTCTAGATTTTAGGTTTAAGTATTCCAAAATTCGAAAATACTGATTTTGAAAATTTCTGAGATTTTATATTCGGATTAGTTTTCTTTTCAAAAGTATTCATCTTATTATTTTGATAGAATAATTCGGACCTATGGAAGAGAATATAACAAATCACTATCTCATTTGTTACTGTGCCTAGTCATTTAATCTGTATTTTTTAATGAACCTGTCAACTTTGAGCCTATTTTTCTCGTTTCATGTAAGAGAGTTTTGAAATTTTTAACGCATAAAATATTTTTCTCATTTAAGTGAACATTTTTCAATTTACAACTTTTCGATATCTTTTTCAGAAAACGAGAGAAACTGGCTCAATCTTTTCTGGGGCTTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCATTCTTTTGTTGTATATCAT</pcr_primer_p1>
		<pcr_primer_p2>TCTGAACTTAGGAACTCTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCCATTCTTTTGTTGTATATCATAAGCCAGACATAATAAAAAAGGAAATGTGTGGTATATTTTTTTTGGGTTCTTGAAGTGAAAAGAGAAAAAAAGAACTTTTGACTGGGTGTTTTGAATCGAAATTGAAATTTATCGAACATCGTAAATCCAGAATGACAAAGATTGTACGGATTTAAATTTTGAGGTTCATCGAACACTAGGAAATAGATTTTTTAATTATAGAATTCAAAGAGTTCCTAAGTTCAGA</canonical_amplicon>
		<polymorphic_amplicon>GCCATTCTTTTGTTGTATATCATAAGCCAGACATAATAAAAAAGGAAATGTGTGGTATATTTTTTTTGGGTTCTTGAAGTGAAAAGAGAAAAAAAGAACTTTTGACTGGGTGTTTTGAATCGAAATTGAAATTTATCGAACATCGTWAATCCAGAATGACAAAGATTGTACGGATTTAAATTTTGAGGTTCATCGAACACTAGGAAATAGATTTTTTAATTATAGAATTCAAAGAGTTCCTAAGTTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16239</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>349974</contig_pos>
        <strand>+</strand>
        <context>GGTTCTTGAA[A/G]TGAAAAGAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGACATAATAAAAAAGGAAATGTGTGGTATATTTTTTTTGGGTTCTTGAA</left_flank>
        <right_flank>TGAAAAGAGAAAAAAAGAACTTTTGACTGGGTGTTTTGAATCGAAATTGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATTCTTTTCACCCTAACACCCCGAAAAATTGCCCTTTAAAGTTCTATAGATTTAAAAGGATTAAAAACCAAAAATTGGAGAGAGAGAGAAAATGTAGAGGGTCTAAAAAGGAACCCACAAACTCTATTTTAGGTAGGGTTCGAAAGTTTGAGAGCCAAAAAAGATGCGAATGTTTTTAATTTCGGTGGCGGAAACGAAAACTTAGGAGCGAAGAATTCAAAAACAAGAAGCTCTTAAAAGCCGAAACTTGACCCCTATTTTTCGAAAATTTTCCCCGAACAGTAGTCTAGAAATCTCTGAAATATCAGATATCACTATATTTACCAAAACTTCAGTTTCTCAGAACTTACTTTTTTTGAAATCCACCATCACCATCACCACTACACATTTTTGATCCACACAATAGAATATTCTGAGAGGCCATTCTTTTGTTGTATATCATAAGCCAGACATAATAAAAAAGGAAATGTGTGGTATATTTTTTTTGGGTTCTTGAAGTGAAAAGAGAAAAAAAGAACTTTTGACTGGGTGTTTTGAATCGAAATTGAAATTTATCGAACATCGTAAATCCAGAATGACAAAGATTGTACGGATTTAAATTTTGAGGTTCATCGAACACTAGGAAATAGATTTTTTAATTATAGAATTCAAAGAGTTCCTAAGTTCAGAAGATCTTCAGAATCACTGGATGTTTAGGTCTAGATTTTAGGTTTAAGTATTCCAAAATTCGAAAATACTGATTTTGAAAATTTCTGAGATTTTATATTCGGATTAGTTTTCTTTTCAAAAGTATTCATCTTATTATTTTGATAGAATAATTCGGACCTATGGAAGAGAATATAACAAATCACTATCTCATTTGTTACTGTGCCTAGTCATTTAATCTGTATTTTTTAATGAACCTGTCAACTTTGAGCCTATTTTTCTCGTTTCATGTAAGAGAGTTTTGAAATTTTTAACGCATAAAATATTTTTCTCATTTAAGTGAACATTTTTCA</canonical>
            <polymorphic>TCATTCTTTTCACCCTAACACCCCGAAAAATTGCCCTTTAAAGTTCTATAGATTTAAAAGGATTAAAAACCAAAAATTGGAGAGAGAGAGAAAATGTAGAGGGTCTAAAAAGGAACCCACAAACTCTATTTTAGGTAGGGTTCGAAAGTTTGAGAGCCAAAAAAGATGCGAATGTTTTTAATTTCGGTGGCGGAAACGAAAACTTAGGAGCGAAGAATTCAAAAACAAGAAGCTCTTAAAAGCCGAAACTTGACCCCTATTTTTCGAAAATTTTCCCCGAACAGTAGTCTAGAAATCTCTGAAATATCAGATATCACTATATTTACCAAAACTTCAGTTTCTCAGAACTTACTTTTTTTGAAATCCACCATCACCATCACCACTACACATTTTTGATCCACACAATAGAATATTCTGAGAGGCCATTCTTTTGTTGTATATCATAAGCCAGACATAATAAAAAAGGAAATGTGTGGTATATTTTTTTTGGGTTCTTGAARTGAAAAGAGAAAAAAAGAACTTTTGACTGGGTGTTTTGAATCGAAATTGAAATTTATCGAACATCGTAAATCCAGAATGACAAAGATTGTACGGATTTAAATTTTGAGGTTCATCGAACACTAGGAAATAGATTTTTTAATTATAGAATTCAAAGAGTTCCTAAGTTCAGAAGATCTTCAGAATCACTGGATGTTTAGGTCTAGATTTTAGGTTTAAGTATTCCAAAATTCGAAAATACTGATTTTGAAAATTTCTGAGATTTTATATTCGGATTAGTTTTCTTTTCAAAAGTATTCATCTTATTATTTTGATAGAATAATTCGGACCTATGGAAGAGAATATAACAAATCACTATCTCATTTGTTACTGTGCCTAGTCATTTAATCTGTATTTTTTAATGAACCTGTCAACTTTGAGCCTATTTTTCTCGTTTCATGTAAGAGAGTTTTGAAATTTTTAACGCATAAAATATTTTTCTCATTTAAGTGAACATTTTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>166 127 117 99 87 71 70 66 51 31 27 20 13 12 11 8 6 6 5 3 2 2</canonical_bands>
                <polymorphic_bands>166 127 117 99 87 71 70 66 58 51 20 13 12 11 8 6 6 5 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCATTCTTTTGTTGTATATCAT</pcr_primer_p1>
		<pcr_primer_p2>TCTGAACTTAGGAACTCTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCCATTCTTTTGTTGTATATCATAAGCCAGACATAATAAAAAAGGAAATGTGTGGTATATTTTTTTTGGGTTCTTGAAGTGAAAAGAGAAAAAAAGAACTTTTGACTGGGTGTTTTGAATCGAAATTGAAATTTATCGAACATCGTAAATCCAGAATGACAAAGATTGTACGGATTTAAATTTTGAGGTTCATCGAACACTAGGAAATAGATTTTTTAATTATAGAATTCAAAGAGTTCCTAAGTTCAGA</canonical_amplicon>
		<polymorphic_amplicon>GCCATTCTTTTGTTGTATATCATAAGCCAGACATAATAAAAAAGGAAATGTGTGGTATATTTTTTTTGGGTTCTTGAARTGAAAAGAGAAAAAAAGAACTTTTGACTGGGTGTTTTGAATCGAAATTGAAATTTATCGAACATCGTAAATCCAGAATGACAAAGATTGTACGGATTTAAATTTTGAGGTTCATCGAACACTAGGAAATAGATTTTTTAATTATAGAATTCAAAGAGTTCCTAAGTTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16240</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>349956</contig_pos>
        <strand>+</strand>
        <context>TGTGGTATAT[C/T]TTTTTTGGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTTGTATATCATAAGCCAGACATAATAAAAAAGGAAATGTGTGGTATAT</left_flank>
        <right_flank>TTTTTTGGGTTCTTGAAGTGAAAAGAGAAAAAAAGAACTTTTGACTGGGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTCCCACTTTTTGTTTCATTCTTTTCACCCTAACACCCCGAAAAATTGCCCTTTAAAGTTCTATAGATTTAAAAGGATTAAAAACCAAAAATTGGAGAGAGAGAGAAAATGTAGAGGGTCTAAAAAGGAACCCACAAACTCTATTTTAGGTAGGGTTCGAAAGTTTGAGAGCCAAAAAAGATGCGAATGTTTTTAATTTCGGTGGCGGAAACGAAAACTTAGGAGCGAAGAATTCAAAAACAAGAAGCTCTTAAAAGCCGAAACTTGACCCCTATTTTTCGAAAATTTTCCCCGAACAGTAGTCTAGAAATCTCTGAAATATCAGATATCACTATATTTACCAAAACTTCAGTTTCTCAGAACTTACTTTTTTTGAAATCCACCATCACCATCACCACTACACATTTTTGATCCACACAATAGAATATTCTGAGAGGCCATTCTTTTGTTGTATATCATAAGCCAGACATAATAAAAAAGGAAATGTGTGGTATATTTTTTTTGGGTTCTTGAAGTGAAAAGAGAAAAAAAGAACTTTTGACTGGGTGTTTTGAATCGAAATTGAAATTTATCGAACATCGTAAATCCAGAATGACAAAGATTGTACGGATTTAAATTTTGAGGTTCATCGAACACTAGGAAATAGATTTTTTAATTATAGAATTCAAAGAGTTCCTAAGTTCAGAAGATCTTCAGAATCACTGGATGTTTAGGTCTAGATTTTAGGTTTAAGTATTCCAAAATTCGAAAATACTGATTTTGAAAATTTCTGAGATTTTATATTCGGATTAGTTTTCTTTTCAAAAGTATTCATCTTATTATTTTGATAGAATAATTCGGACCTATGGAAGAGAATATAACAAATCACTATCTCATTTGTTACTGTGCCTAGTCATTTAATCTGTATTTTTTAATGAACCTGTCAACTTTGAGCCTATTTTTCTCGTTTCATGTAAGAGAGTTTTGAAATTTTTAACGCATAAAATATTTTTCTCAT</canonical>
            <polymorphic>TTGTTCCCACTTTTTGTTTCATTCTTTTCACCCTAACACCCCGAAAAATTGCCCTTTAAAGTTCTATAGATTTAAAAGGATTAAAAACCAAAAATTGGAGAGAGAGAGAAAATGTAGAGGGTCTAAAAAGGAACCCACAAACTCTATTTTAGGTAGGGTTCGAAAGTTTGAGAGCCAAAAAAGATGCGAATGTTTTTAATTTCGGTGGCGGAAACGAAAACTTAGGAGCGAAGAATTCAAAAACAAGAAGCTCTTAAAAGCCGAAACTTGACCCCTATTTTTCGAAAATTTTCCCCGAACAGTAGTCTAGAAATCTCTGAAATATCAGATATCACTATATTTACCAAAACTTCAGTTTCTCAGAACTTACTTTTTTTGAAATCCACCATCACCATCACCACTACACATTTTTGATCCACACAATAGAATATTCTGAGAGGCCATTCTTTTGTTGTATATCATAAGCCAGACATAATAAAAAAGGAAATGTGTGGTATATYTTTTTTGGGTTCTTGAAGTGAAAAGAGAAAAAAAGAACTTTTGACTGGGTGTTTTGAATCGAAATTGAAATTTATCGAACATCGTAAATCCAGAATGACAAAGATTGTACGGATTTAAATTTTGAGGTTCATCGAACACTAGGAAATAGATTTTTTAATTATAGAATTCAAAGAGTTCCTAAGTTCAGAAGATCTTCAGAATCACTGGATGTTTAGGTCTAGATTTTAGGTTTAAGTATTCCAAAATTCGAAAATACTGATTTTGAAAATTTCTGAGATTTTATATTCGGATTAGTTTTCTTTTCAAAAGTATTCATCTTATTATTTTGATAGAATAATTCGGACCTATGGAAGAGAATATAACAAATCACTATCTCATTTGTTACTGTGCCTAGTCATTTAATCTGTATTTTTTAATGAACCTGTCAACTTTGAGCCTATTTTTCTCGTTTCATGTAAGAGAGTTTTGAAATTTTTAACGCATAAAATATTTTTCTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCATTCTTTTGTTGTATATCAT</pcr_primer_p1>
		<pcr_primer_p2>TCTGAACTTAGGAACTCTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCCATTCTTTTGTTGTATATCATAAGCCAGACATAATAAAAAAGGAAATGTGTGGTATATTTTTTTTGGGTTCTTGAAGTGAAAAGAGAAAAAAAGAACTTTTGACTGGGTGTTTTGAATCGAAATTGAAATTTATCGAACATCGTAAATCCAGAATGACAAAGATTGTACGGATTTAAATTTTGAGGTTCATCGAACACTAGGAAATAGATTTTTTAATTATAGAATTCAAAGAGTTCCTAAGTTCAGA</canonical_amplicon>
		<polymorphic_amplicon>GCCATTCTTTTGTTGTATATCATAAGCCAGACATAATAAAAAAGGAAATGTGTGGTATATYTTTTTTGGGTTCTTGAAGTGAAAAGAGAAAAAAAGAACTTTTGACTGGGTGTTTTGAATCGAAATTGAAATTTATCGAACATCGTAAATCCAGAATGACAAAGATTGTACGGATTTAAATTTTGAGGTTCATCGAACACTAGGAAATAGATTTTTTAATTATAGAATTCAAAGAGTTCCTAAGTTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16241</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>349943</contig_pos>
        <strand>+</strand>
        <context>AAAAAAGGAA[A/T]TGTGTGGTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGGCCATTCTTTTGTTGTATATCATAAGCCAGACATAATAAAAAAGGAA</left_flank>
        <right_flank>TGTGTGGTATATTTTTTTTGGGTTCTTGAAGTGAAAAGAGAAAAAAAGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTTGTTTGGCGTTGTTCCCACTTTTTGTTTCATTCTTTTCACCCTAACACCCCGAAAAATTGCCCTTTAAAGTTCTATAGATTTAAAAGGATTAAAAACCAAAAATTGGAGAGAGAGAGAAAATGTAGAGGGTCTAAAAAGGAACCCACAAACTCTATTTTAGGTAGGGTTCGAAAGTTTGAGAGCCAAAAAAGATGCGAATGTTTTTAATTTCGGTGGCGGAAACGAAAACTTAGGAGCGAAGAATTCAAAAACAAGAAGCTCTTAAAAGCCGAAACTTGACCCCTATTTTTCGAAAATTTTCCCCGAACAGTAGTCTAGAAATCTCTGAAATATCAGATATCACTATATTTACCAAAACTTCAGTTTCTCAGAACTTACTTTTTTTGAAATCCACCATCACCATCACCACTACACATTTTTGATCCACACAATAGAATATTCTGAGAGGCCATTCTTTTGTTGTATATCATAAGCCAGACATAATAAAAAAGGAAATGTGTGGTATATTTTTTTTGGGTTCTTGAAGTGAAAAGAGAAAAAAAGAACTTTTGACTGGGTGTTTTGAATCGAAATTGAAATTTATCGAACATCGTAAATCCAGAATGACAAAGATTGTACGGATTTAAATTTTGAGGTTCATCGAACACTAGGAAATAGATTTTTTAATTATAGAATTCAAAGAGTTCCTAAGTTCAGAAGATCTTCAGAATCACTGGATGTTTAGGTCTAGATTTTAGGTTTAAGTATTCCAAAATTCGAAAATACTGATTTTGAAAATTTCTGAGATTTTATATTCGGATTAGTTTTCTTTTCAAAAGTATTCATCTTATTATTTTGATAGAATAATTCGGACCTATGGAAGAGAATATAACAAATCACTATCTCATTTGTTACTGTGCCTAGTCATTTAATCTGTATTTTTTAATGAACCTGTCAACTTTGAGCCTATTTTTCTCGTTTCATGTAAGAGAGTTTTGAAATTTTTAACGCATAAA</canonical>
            <polymorphic>CAGTTGTTTGGCGTTGTTCCCACTTTTTGTTTCATTCTTTTCACCCTAACACCCCGAAAAATTGCCCTTTAAAGTTCTATAGATTTAAAAGGATTAAAAACCAAAAATTGGAGAGAGAGAGAAAATGTAGAGGGTCTAAAAAGGAACCCACAAACTCTATTTTAGGTAGGGTTCGAAAGTTTGAGAGCCAAAAAAGATGCGAATGTTTTTAATTTCGGTGGCGGAAACGAAAACTTAGGAGCGAAGAATTCAAAAACAAGAAGCTCTTAAAAGCCGAAACTTGACCCCTATTTTTCGAAAATTTTCCCCGAACAGTAGTCTAGAAATCTCTGAAATATCAGATATCACTATATTTACCAAAACTTCAGTTTCTCAGAACTTACTTTTTTTGAAATCCACCATCACCATCACCACTACACATTTTTGATCCACACAATAGAATATTCTGAGAGGCCATTCTTTTGTTGTATATCATAAGCCAGACATAATAAAAAAGGAAWTGTGTGGTATATTTTTTTTGGGTTCTTGAAGTGAAAAGAGAAAAAAAGAACTTTTGACTGGGTGTTTTGAATCGAAATTGAAATTTATCGAACATCGTAAATCCAGAATGACAAAGATTGTACGGATTTAAATTTTGAGGTTCATCGAACACTAGGAAATAGATTTTTTAATTATAGAATTCAAAGAGTTCCTAAGTTCAGAAGATCTTCAGAATCACTGGATGTTTAGGTCTAGATTTTAGGTTTAAGTATTCCAAAATTCGAAAATACTGATTTTGAAAATTTCTGAGATTTTATATTCGGATTAGTTTTCTTTTCAAAAGTATTCATCTTATTATTTTGATAGAATAATTCGGACCTATGGAAGAGAATATAACAAATCACTATCTCATTTGTTACTGTGCCTAGTCATTTAATCTGTATTTTTTAATGAACCTGTCAACTTTGAGCCTATTTTTCTCGTTTCATGTAAGAGAGTTTTGAAATTTTTAACGCATAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACCAAAACTTCAGTTTCTCAG</pcr_primer_p1>
		<pcr_primer_p2>ACGATGTTCGATAAATTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTACCAAAACTTCAGTTTCTCAGAACTTACTTTTTTTGAAATCCACCATCACCATCACCACTACACATTTTTGATCCACACAATAGAATATTCTGAGAGGCCATTCTTTTGTTGTATATCATAAGCCAGACATAATAAAAAAGGAAATGTGTGGTATATTTTTTTTGGGTTCTTGAAGTGAAAAGAGAAAAAAAGAACTTTTGACTGGGTGTTTTGAATCGAAATTGAAATTTATCGAACATCGT</canonical_amplicon>
		<polymorphic_amplicon>TTACCAAAACTTCAGTTTCTCAGAACTTACTTTTTTTGAAATCCACCATCACCATCACCACTACACATTTTTGATCCACACAATAGAATATTCTGAGAGGCCATTCTTTTGTTGTATATCATAAGCCAGACATAATAAAAAAGGAAWTGTGTGGTATATTTTTTTTGGGTTCTTGAAGTGAAAAGAGAAAAAAAGAACTTTTGACTGGGTGTTTTGAATCGAAATTGAAATTTATCGAACATCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16242</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>349689</contig_pos>
        <strand>+</strand>
        <context>TAGGAGCGAA[A/G]AATTCAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATGCGAATGTTTTTAATTTCGGTGGCGGAAACGAAAACTTAGGAGCGAA</left_flank>
        <right_flank>AATTCAAAAACAAGAAGCTCTTAAAAGCCGAAACTTGACCCCTATTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGACCATCTGAGATTCTGAAAATATTTCCAGAATTAGCTTGAATAATTTATCTCTGTCTGCTGAGTTTGTAGTTTGGTTTTCTTCAAAAATCCTAAAAATTCTCAATTTTCAAAGTTTGAAAAATCTTGTAGTTTGGCTTTCCATTTGAACTCTGATCCCACAAAAAAGGTGAAGGTTCAATATTGTCTTCTATTTCCTTTGATTGATTTGTCCGTAGAGAGGTGACACCAGTTTCAAATTTTGAGGCTGAGCAGTTGTTTGGCGTTGTTCCCACTTTTTGTTTCATTCTTTTCACCCTAACACCCCGAAAAATTGCCCTTTAAAGTTCTATAGATTTAAAAGGATTAAAAACCAAAAATTGGAGAGAGAGAGAAAATGTAGAGGGTCTAAAAAGGAACCCACAAACTCTATTTTAGGTAGGGTTCGAAAGTTTGAGAGCCAAAAAAGATGCGAATGTTTTTAATTTCGGTGGCGGAAACGAAAACTTAGGAGCGAAGAATTCAAAAACAAGAAGCTCTTAAAAGCCGAAACTTGACCCCTATTTTTCGAAAATTTTCCCCGAACAGTAGTCTAGAAATCTCTGAAATATCAGATATCACTATATTTACCAAAACTTCAGTTTCTCAGAACTTACTTTTTTTGAAATCCACCATCACCATCACCACTACACATTTTTGATCCACACAATAGAATATTCTGAGAGGCCATTCTTTTGTTGTATATCATAAGCCAGACATAATAAAAAAGGAAATGTGTGGTATATTTTTTTTGGGTTCTTGAAGTGAAAAGAGAAAAAAAGAACTTTTGACTGGGTGTTTTGAATCGAAATTGAAATTTATCGAACATCGTAAATCCAGAATGACAAAGATTGTACGGATTTAAATTTTGAGGTTCATCGAACACTAGGAAATAGATTTTTTAATTATAGAATTCAAAGAGTTCCTAAGTTCAGAAGATCTTCAGAATCACTGGATGTTTAGGTCTAGATTTTAGGTTT</canonical>
            <polymorphic>ATGGACCATCTGAGATTCTGAAAATATTTCCAGAATTAGCTTGAATAATTTATCTCTGTCTGCTGAGTTTGTAGTTTGGTTTTCTTCAAAAATCCTAAAAATTCTCAATTTTCAAAGTTTGAAAAATCTTGTAGTTTGGCTTTCCATTTGAACTCTGATCCCACAAAAAAGGTGAAGGTTCAATATTGTCTTCTATTTCCTTTGATTGATTTGTCCGTAGAGAGGTGACACCAGTTTCAAATTTTGAGGCTGAGCAGTTGTTTGGCGTTGTTCCCACTTTTTGTTTCATTCTTTTCACCCTAACACCCCGAAAAATTGCCCTTTAAAGTTCTATAGATTTAAAAGGATTAAAAACCAAAAATTGGAGAGAGAGAGAAAATGTAGAGGGTCTAAAAAGGAACCCACAAACTCTATTTTAGGTAGGGTTCGAAAGTTTGAGAGCCAAAAAAGATGCGAATGTTTTTAATTTCGGTGGCGGAAACGAAAACTTAGGAGCGAARAATTCAAAAACAAGAAGCTCTTAAAAGCCGAAACTTGACCCCTATTTTTCGAAAATTTTCCCCGAACAGTAGTCTAGAAATCTCTGAAATATCAGATATCACTATATTTACCAAAACTTCAGTTTCTCAGAACTTACTTTTTTTGAAATCCACCATCACCATCACCACTACACATTTTTGATCCACACAATAGAATATTCTGAGAGGCCATTCTTTTGTTGTATATCATAAGCCAGACATAATAAAAAAGGAAATGTGTGGTATATTTTTTTTGGGTTCTTGAAGTGAAAAGAGAAAAAAAGAACTTTTGACTGGGTGTTTTGAATCGAAATTGAAATTTATCGAACATCGTAAATCCAGAATGACAAAGATTGTACGGATTTAAATTTTGAGGTTCATCGAACACTAGGAAATAGATTTTTTAATTATAGAATTCAAAGAGTTCCTAAGTTCAGAAGATCTTCAGAATCACTGGATGTTTAGGTCTAGATTTTAGGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>282 261 140 99 69 53 49 47</canonical_bands>
                <polymorphic_bands>314 282 140 99 69 49 47</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>500 431 69</canonical_bands>
                <polymorphic_bands>931 69</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGAGGGTCTAAAAAGGAACC</pcr_primer_p1>
		<pcr_primer_p2>CTGAGAAACTGAAGTTTTGGTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAGAGGGTCTAAAAAGGAACCCACAAACTCTATTTTAGGTAGGGTTCGAAAGTTTGAGAGCCAAAAAAGATGCGAATGTTTTTAATTTCGGTGGCGGAAACGAAAACTTAGGAGCGAAGAATTCAAAAACAAGAAGCTCTTAAAAGCCGAAACTTGACCCCTATTTTTCGAAAATTTTCCCCGAACAGTAGTCTAGAAATCTCTGAAATATCAGATATCACTATATTTACCAAAACTTCAGTTTCTCAG</canonical_amplicon>
		<polymorphic_amplicon>GTAGAGGGTCTAAAAAGGAACCCACAAACTCTATTTTAGGTAGGGTTCGAAAGTTTGAGAGCCAAAAAAGATGCGAATGTTTTTAATTTCGGTGGCGGAAACGAAAACTTAGGAGCGAARAATTCAAAAACAAGAAGCTCTTAAAAGCCGAAACTTGACCCCTATTTTTCGAAAATTTTCCCCGAACAGTAGTCTAGAAATCTCTGAAATATCAGATATCACTATATTTACCAAAACTTCAGTTTCTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16243</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>377937</contig_pos>
        <strand>+</strand>
        <context>CACTTCGGAT[A/T]GTCACTTAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAACTTCACGACTACATAGCTACCCCTTGCCCGCCAGAACACTTCGGAT</left_flank>
        <right_flank>GTCACTTAATTTTACAACCACCCAGCTGTCTGGCATATGACATAACCACT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGAAGAAGTTTTGGAGCATCATTTCATTTGGATCCTTCTTCTGATTTCCTTGCTGAACTGGTGTCGACAGACCAATCTGCGCGAGAAGTGACTGCATGAGTTGATGGTTTGGTGTCAGTGGTGTCTCAGATTCTTCAGATTTCTGCTTCTTGGCACTTGGCTGCATTGAAAGATCGTCGTCGTCTACTGATGCGGATGAGTATGGTGCGGAGACGTGTCCATTGACGATAACAGATGAAGCGGCGGAGTCGACAGAAGACGTTGTGCTGGCTGCACTGCATCCTGTGGAAGTGGAGGTAGTTGGAAGGATCATGGAAGCAAGTTGGGAGTTGAGAGAGACCGCTGGTGTTGGAGATGGAGAAGCATCACGTCGTTCTTCGGATTCTGGTTGATCGGACTGTAATGAAGATTAGATTAGAATAAAATAGGGTCTTTATTGTCTAAAATTTAACTTCACGACTACATAGCTACCCCTTGCCCGCCAGAACACTTCGGATTGTCACTTAATTTTACAACCACCCAGCTGTCTGGCATATGACATAACCACTTTTCGAGTTTCCAAAAAATATCTAGAACAAATTAACTTTTGCATAAAAAACTCAGAAAACATTGCTAAGCCTCCATGACACGTCTTCTTCCAAATCTGAGTATTCCTAATCTATGTAAATCCCTCTTTTCCAACTTACCGACTGTTTCTGTTGCGTAAGTTTGGCAGCGATCTTCATAAAATCTGTAGTTCCACCCAACAATTCCATAATGGCAGATGGATTCTGCATCAGATCCTCTGCAACTTTTGCTTTCGTTGGCGACTCCAGATTCTGCTGTTGTTGCTGAAGAAGCATCTGCATCCACTGATTCTGTCCAGCTTGCAACATTTGGCTCTGGAGGAATTGCTCCTTCTCATCGGCCTCAGCCAGAATCGAAGACGACGATGGGGCTCCAGAAGACGAGGTTGGGCTAGTGGATCCTCCAGAATTGGTCATCTTCATGACGTTAAA</canonical>
            <polymorphic>TGGGAAGAAGTTTTGGAGCATCATTTCATTTGGATCCTTCTTCTGATTTCCTTGCTGAACTGGTGTCGACAGACCAATCTGCGCGAGAAGTGACTGCATGAGTTGATGGTTTGGTGTCAGTGGTGTCTCAGATTCTTCAGATTTCTGCTTCTTGGCACTTGGCTGCATTGAAAGATCGTCGTCGTCTACTGATGCGGATGAGTATGGTGCGGAGACGTGTCCATTGACGATAACAGATGAAGCGGCGGAGTCGACAGAAGACGTTGTGCTGGCTGCACTGCATCCTGTGGAAGTGGAGGTAGTTGGAAGGATCATGGAAGCAAGTTGGGAGTTGAGAGAGACCGCTGGTGTTGGAGATGGAGAAGCATCACGTCGTTCTTCGGATTCTGGTTGATCGGACTGTAATGAAGATTAGATTAGAATAAAATAGGGTCTTTATTGTCTAAAATTTAACTTCACGACTACATAGCTACCCCTTGCCCGCCAGAACACTTCGGATWGTCACTTAATTTTACAACCACCCAGCTGTCTGGCATATGACATAACCACTTTTCGAGTTTCCAAAAAATATCTAGAACAAATTAACTTTTGCATAAAAAACTCAGAAAACATTGCTAAGCCTCCATGACACGTCTTCTTCCAAATCTGAGTATTCCTAATCTATGTAAATCCCTCTTTTCCAACTTACCGACTGTTTCTGTTGCGTAAGTTTGGCAGCGATCTTCATAAAATCTGTAGTTCCACCCAACAATTCCATAATGGCAGATGGATTCTGCATCAGATCCTCTGCAACTTTTGCTTTCGTTGGCGACTCCAGATTCTGCTGTTGTTGCTGAAGAAGCATCTGCATCCACTGATTCTGTCCAGCTTGCAACATTTGGCTCTGGAGGAATTGCTCCTTCTCATCGGCCTCAGCCAGAATCGAAGACGACGATGGGGCTCCAGAAGACGAGGTTGGGCTAGTGGATCCTCCAGAATTGGTCATCTTCATGACGTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAAAATTTAACTTCACGACTACA</pcr_primer_p1>
		<pcr_primer_p2>GTAAGTTGGAAAAGAGGGATTTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTAAAATTTAACTTCACGACTACATAGCTACCCCTTGCCCGCCAGAACACTTCGGATTGTCACTTAATTTTACAACCACCCAGCTGTCTGGCATATGACATAACCACTTTTCGAGTTTCCAAAAAATATCTAGAACAAATTAACTTTTGCATAAAAAACTCAGAAAACATTGCTAAGCCTCCATGACACGTCTTCTTCCAAATCTGAGTATTCCTAATCTATGTAAATCCCTCTTTTCCAACTTAC</canonical_amplicon>
		<polymorphic_amplicon>TCTAAAATTTAACTTCACGACTACATAGCTACCCCTTGCCCGCCAGAACACTTCGGATWGTCACTTAATTTTACAACCACCCAGCTGTCTGGCATATGACATAACCACTTTTCGAGTTTCCAAAAAATATCTAGAACAAATTAACTTTTGCATAAAAAACTCAGAAAACATTGCTAAGCCTCCATGACACGTCTTCTTCCAAATCTGAGTATTCCTAATCTATGTAAATCCCTCTTTTCCAACTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16244</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>378261</contig_pos>
        <strand>+</strand>
        <context>CCAGATTCTG[C/T]TGTTGTTGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCATCAGATCCTCTGCAACTTTTGCTTTCGTTGGCGACTCCAGATTCTG</left_flank>
        <right_flank>TGTTGTTGCTGAAGAAGCATCTGCATCCACTGATTCTGTCCAGCTTGCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGGAGTTGAGAGAGACCGCTGGTGTTGGAGATGGAGAAGCATCACGTCGTTCTTCGGATTCTGGTTGATCGGACTGTAATGAAGATTAGATTAGAATAAAATAGGGTCTTTATTGTCTAAAATTTAACTTCACGACTACATAGCTACCCCTTGCCCGCCAGAACACTTCGGATTGTCACTTAATTTTACAACCACCCAGCTGTCTGGCATATGACATAACCACTTTTCGAGTTTCCAAAAAATATCTAGAACAAATTAACTTTTGCATAAAAAACTCAGAAAACATTGCTAAGCCTCCATGACACGTCTTCTTCCAAATCTGAGTATTCCTAATCTATGTAAATCCCTCTTTTCCAACTTACCGACTGTTTCTGTTGCGTAAGTTTGGCAGCGATCTTCATAAAATCTGTAGTTCCACCCAACAATTCCATAATGGCAGATGGATTCTGCATCAGATCCTCTGCAACTTTTGCTTTCGTTGGCGACTCCAGATTCTGCTGTTGTTGCTGAAGAAGCATCTGCATCCACTGATTCTGTCCAGCTTGCAACATTTGGCTCTGGAGGAATTGCTCCTTCTCATCGGCCTCAGCCAGAATCGAAGACGACGATGGGGCTCCAGAAGACGAGGTTGGGCTAGTGGATCCTCCAGAATTGGTCATCTTCATGACGTTAAACTGGTTGCTAGTCTGAAAATAAAGAAAAATGAAAATGGAATGGGAGAATGAAATGAGAGATTGAAATATTGTAAAATTCTTGCACTCGAAATATTAAAAGATAAAAGATCGTTGAGAAAAAGAGCTTAGAAGGTGTATCAGTAAATCGGTATTGGATAAAATGCAAAGGATTAGGGCACAAAAACTTGGATTTCGCGAATTCACATGACTTTCGTCCGCAGAAGAATTTTTCGGTTTTTTCTCACGCCCCGCGATTTGGAAAAAAAAGGAATCCGAATTTAGAATTTAGAATGTTGCCGACTGGCTGCTCGAGACCTCAGGAAT</canonical>
            <polymorphic>TTGGGAGTTGAGAGAGACCGCTGGTGTTGGAGATGGAGAAGCATCACGTCGTTCTTCGGATTCTGGTTGATCGGACTGTAATGAAGATTAGATTAGAATAAAATAGGGTCTTTATTGTCTAAAATTTAACTTCACGACTACATAGCTACCCCTTGCCCGCCAGAACACTTCGGATTGTCACTTAATTTTACAACCACCCAGCTGTCTGGCATATGACATAACCACTTTTCGAGTTTCCAAAAAATATCTAGAACAAATTAACTTTTGCATAAAAAACTCAGAAAACATTGCTAAGCCTCCATGACACGTCTTCTTCCAAATCTGAGTATTCCTAATCTATGTAAATCCCTCTTTTCCAACTTACCGACTGTTTCTGTTGCGTAAGTTTGGCAGCGATCTTCATAAAATCTGTAGTTCCACCCAACAATTCCATAATGGCAGATGGATTCTGCATCAGATCCTCTGCAACTTTTGCTTTCGTTGGCGACTCCAGATTCTGYTGTTGTTGCTGAAGAAGCATCTGCATCCACTGATTCTGTCCAGCTTGCAACATTTGGCTCTGGAGGAATTGCTCCTTCTCATCGGCCTCAGCCAGAATCGAAGACGACGATGGGGCTCCAGAAGACGAGGTTGGGCTAGTGGATCCTCCAGAATTGGTCATCTTCATGACGTTAAACTGGTTGCTAGTCTGAAAATAAAGAAAAATGAAAATGGAATGGGAGAATGAAATGAGAGATTGAAATATTGTAAAATTCTTGCACTCGAAATATTAAAAGATAAAAGATCGTTGAGAAAAAGAGCTTAGAAGGTGTATCAGTAAATCGGTATTGGATAAAATGCAAAGGATTAGGGCACAAAAACTTGGATTTCGCGAATTCACATGACTTTCGTCCGCAGAAGAATTTTTCGGTTTTTTCTCACGCCCCGCGATTTGGAAAAAAAAGGAATCCGAATTTAGAATTTAGAATGTTGCCGACTGGCTGCTCGAGACCTCAGGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>495 471 34</canonical_bands>
                <polymorphic_bands>486 471 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATAATGGCAGATGGATTCT</pcr_primer_p1>
		<pcr_primer_p2>TAACGTCATGAAGATGACCA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CATAATGGCAGATGGATTCTGCATCAGATCCTCTGCAACTTTTGCTTTCGTTGGCGACTCCAGATTCTGCTGTTGTTGCTGAAGAAGCATCTGCATCCACTGATTCTGTCCAGCTTGCAACATTTGGCTCTGGAGGAATTGCTCCTTCTCATCGGCCTCAGCCAGAATCGAAGACGACGATGGGGCTCCAGAAGACGAGGTTGGGCTAGTGGATCCTCCAGAATTGGTCATCTTCATGACGTTA</canonical_amplicon>
		<polymorphic_amplicon>CATAATGGCAGATGGATTCTGCATCAGATCCTCTGCAACTTTTGCTTTCGTTGGCGACTCCAGATTCTGYTGTTGTTGCTGAAGAAGCATCTGCATCCACTGATTCTGTCCAGCTTGCAACATTTGGCTCTGGAGGAATTGCTCCTTCTCATCGGCCTCAGCCAGAATCGAAGACGACGATGGGGCTCCAGAAGACGAGGTTGGGCTAGTGGATCCTCCAGAATTGGTCATCTTCATGACGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16245</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>386255</contig_pos>
        <strand>+</strand>
        <context>TCAGAAAATG[G/T]TTTTTTTAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATCGAAACATGATTTGGATGGTTTCGGAAAACTGGGTGGTCAGAAAATG</left_flank>
        <right_flank>TTTTTTTAAGTTGGTCAGTTGGAAATTTGATTCATAACAAGTTCTTGTAC</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATGGTAATTTGTTATGAAAATCCTTCTATCTCCTCTCGAACCGTCCGCCCTCCTCCCGTTCGAAAATTGATGTATCTCACTCTAGTGGTAATAGAGTAAAGCCAACAAGTTTTTTATAGATTTCGCGCCCAATCATTCGGGATAGTTTTGGATGGAAAACGAAGGATGAGGAGGGGGAGGACGAGGAACGGGTAATTTGGCGTTTCTTTTTTAAGGGTCTAGCTTTGGCTACTCACTGAAAAGGGAGAGAGGAGGTTTTTGGAACATTATCCAGTTGGATAACGACTAATTTTTTCGGAGAGGGGGGGGGGCGATCTAAACCAATCAGCTGATTTGATGGAAAATGAAAGGGGCGATGGAAGAAAAATGAATGAACGGAAACAAGGAAACAAGTATAGTTAGAAGAATTTTTGAGAAAATAGTGATAGGAAGAAATCAGAGTACCAGTATCGAAACATGATTTGGATGGTTTCGGAAAACTGGGTGGTCAGAAAATGTTTTTTTTAAGTTGGTCAGTTGGAAATTTGATTCATAACAAGTTCTTGTACAAAGTTTGGCTCCTGTTTTCTAGAGAAAATGAAATTTGGGTTGTGTTTCCTAGGATTTCAAGGATTTTGGAATGACTTCAAATTGTAGGCACGAAAAAAACCTAAACGGAAAGTGAATTTCCAGATCTCTGAAAATGTATGGCTGGAAGAAAATGTATTCGTGGATCCTTGAGAATTTTCACACCTAGGCATACAATAGCGTATTTTCTCTAATAGATCCGTTTGATTTGAGCTCAAATTTCTCGATTCCAGTGAAAGATACCAAACATTTGTCAACTGATAAAATATTGGTGATAATAGGATGAACAATTTATCTGTTAATCGCTTTTTGATATCTTTCACAGGAGCCGAGATAATCGATGGTTTGGGGTGGTCTTCTATAGAGGGGATACGGTAATCGAAATCCCAGTTTTTTGAAATGTCAGCTTCAGAATAAGTTAGGTCTAGTCA</canonical>
            <polymorphic>ACATGGTAATTTGTTATGAAAATCCTTCTATCTCCTCTCGAACCGTCCGCCCTCCTCCCGTTCGAAAATTGATGTATCTCACTCTAGTGGTAATAGAGTAAAGCCAACAAGTTTTTTATAGATTTCGCGCCCAATCATTCGGGATAGTTTTGGATGGAAAACGAAGGATGAGGAGGGGGAGGACGAGGAACGGGTAATTTGGCGTTTCTTTTTTAAGGGTCTAGCTTTGGCTACTCACTGAAAAGGGAGAGAGGAGGTTTTTGGAACATTATCCAGTTGGATAACGACTAATTTTTTCGGAGAGGGGGGGGGGCGATCTAAACCAATCAGCTGATTTGATGGAAAATGAAAGGGGCGATGGAAGAAAAATGAATGAACGGAAACAAGGAAACAAGTATAGTTAGAAGAATTTTTGAGAAAATAGTGATAGGAAGAAATCAGAGTACCAGTATCGAAACATGATTTGGATGGTTTCGGAAAACTGGGTGGTCAGAAAATGKTTTTTTTAAGTTGGTCAGTTGGAAATTTGATTCATAACAAGTTCTTGTACAAAGTTTGGCTCCTGTTTTCTAGAGAAAATGAAATTTGGGTTGTGTTTCCTAGGATTTCAAGGATTTTGGAATGACTTCAAATTGTAGGCACGAAAAAAACCTAAACGGAAAGTGAATTTCCAGATCTCTGAAAATGTATGGCTGGAAGAAAATGTATTCGTGGATCCTTGAGAATTTTCACACCTAGGCATACAATAGCGTATTTTCTCTAATAGATCCGTTTGATTTGAGCTCAAATTTCTCGATTCCAGTGAAAGATACCAAACATTTGTCAACTGATAAAATATTGGTGATAATAGGATGAACAATTTATCTGTTAATCGCTTTTTGATATCTTTCACAGGAGCCGAGATAATCGATGGTTTGGGGTGGTCTTCTATAGAGGGGATACGGTAATCGAAATCCCAGTTTTTTGAAATGTCAGCTTCAGAATAAGTTAGGTCTAGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAATCAGAGTACCAGTATCG</pcr_primer_p1>
		<pcr_primer_p2>TTCAGAGATCTGGAAATTCACT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAGAAATCAGAGTACCAGTATCGAAACATGATTTGGATGGTTTCGGAAAACTGGGTGGTCAGAAAATGTTTTTTTTAAGTTGGTCAGTTGGAAATTTGATTCATAACAAGTTCTTGTACAAAGTTTGGCTCCTGTTTTCTAGAGAAAATGAAATTTGGGTTGTGTTTCCTAGGATTTCAAGGATTTTGGAATGACTTCAAATTGTAGGCACGAAAAAAACCTAAACGGAAAGTGAATTTCCAGATCTCTGAA</canonical_amplicon>
		<polymorphic_amplicon>AAGAAATCAGAGTACCAGTATCGAAACATGATTTGGATGGTTTCGGAAAACTGGGTGGTCAGAAAATGKTTTTTTTAAGTTGGTCAGTTGGAAATTTGATTCATAACAAGTTCTTGTACAAAGTTTGGCTCCTGTTTTCTAGAGAAAATGAAATTTGGGTTGTGTTTCCTAGGATTTCAAGGATTTTGGAATGACTTCAAATTGTAGGCACGAAAAAAACCTAAACGGAAAGTGAATTTCCAGATCTCTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16246</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>386106</contig_pos>
        <strand>+</strand>
        <context>GGAAAATGAA[A/G]GGGGCGATGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAGGGGGGGGGGCGATCTAAACCAATCAGCTGATTTGATGGAAAATGAA</left_flank>
        <right_flank>GGGGCGATGGAAGAAAAATGAATGAACGGAAACAAGGAAACAAGTATAGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCGGTGCGTTTATTTTGTCAACGAGATTAAAACAGCTTGTGTCCCGCCTGTCTCCCCTCTGGACGGTAAAAACTATTTTACGGTTTTGCATATTGGTTGGCTAGTTAGCGAAAACGAAACTATATGAATATGTGAAAAAACAAAAAAACATGGTAATTTGTTATGAAAATCCTTCTATCTCCTCTCGAACCGTCCGCCCTCCTCCCGTTCGAAAATTGATGTATCTCACTCTAGTGGTAATAGAGTAAAGCCAACAAGTTTTTTATAGATTTCGCGCCCAATCATTCGGGATAGTTTTGGATGGAAAACGAAGGATGAGGAGGGGGAGGACGAGGAACGGGTAATTTGGCGTTTCTTTTTTAAGGGTCTAGCTTTGGCTACTCACTGAAAAGGGAGAGAGGAGGTTTTTGGAACATTATCCAGTTGGATAACGACTAATTTTTTCGGAGAGGGGGGGGGGCGATCTAAACCAATCAGCTGATTTGATGGAAAATGAAAGGGGCGATGGAAGAAAAATGAATGAACGGAAACAAGGAAACAAGTATAGTTAGAAGAATTTTTGAGAAAATAGTGATAGGAAGAAATCAGAGTACCAGTATCGAAACATGATTTGGATGGTTTCGGAAAACTGGGTGGTCAGAAAATGTTTTTTTTAAGTTGGTCAGTTGGAAATTTGATTCATAACAAGTTCTTGTACAAAGTTTGGCTCCTGTTTTCTAGAGAAAATGAAATTTGGGTTGTGTTTCCTAGGATTTCAAGGATTTTGGAATGACTTCAAATTGTAGGCACGAAAAAAACCTAAACGGAAAGTGAATTTCCAGATCTCTGAAAATGTATGGCTGGAAGAAAATGTATTCGTGGATCCTTGAGAATTTTCACACCTAGGCATACAATAGCGTATTTTCTCTAATAGATCCGTTTGATTTGAGCTCAAATTTCTCGATTCCAGTGAAAGATACCAAACATTTGTCAACTGATAAAATATTGGTGATAATAGG</canonical>
            <polymorphic>CTTCGGTGCGTTTATTTTGTCAACGAGATTAAAACAGCTTGTGTCCCGCCTGTCTCCCCTCTGGACGGTAAAAACTATTTTACGGTTTTGCATATTGGTTGGCTAGTTAGCGAAAACGAAACTATATGAATATGTGAAAAAACAAAAAAACATGGTAATTTGTTATGAAAATCCTTCTATCTCCTCTCGAACCGTCCGCCCTCCTCCCGTTCGAAAATTGATGTATCTCACTCTAGTGGTAATAGAGTAAAGCCAACAAGTTTTTTATAGATTTCGCGCCCAATCATTCGGGATAGTTTTGGATGGAAAACGAAGGATGAGGAGGGGGAGGACGAGGAACGGGTAATTTGGCGTTTCTTTTTTAAGGGTCTAGCTTTGGCTACTCACTGAAAAGGGAGAGAGGAGGTTTTTGGAACATTATCCAGTTGGATAACGACTAATTTTTTCGGAGAGGGGGGGGGGCGATCTAAACCAATCAGCTGATTTGATGGAAAATGAARGGGGCGATGGAAGAAAAATGAATGAACGGAAACAAGGAAACAAGTATAGTTAGAAGAATTTTTGAGAAAATAGTGATAGGAAGAAATCAGAGTACCAGTATCGAAACATGATTTGGATGGTTTCGGAAAACTGGGTGGTCAGAAAATGTTTTTTTTAAGTTGGTCAGTTGGAAATTTGATTCATAACAAGTTCTTGTACAAAGTTTGGCTCCTGTTTTCTAGAGAAAATGAAATTTGGGTTGTGTTTCCTAGGATTTCAAGGATTTTGGAATGACTTCAAATTGTAGGCACGAAAAAAACCTAAACGGAAAGTGAATTTCCAGATCTCTGAAAATGTATGGCTGGAAGAAAATGTATTCGTGGATCCTTGAGAATTTTCACACCTAGGCATACAATAGCGTATTTTCTCTAATAGATCCGTTTGATTTGAGCTCAAATTTCTCGATTCCAGTGAAAGATACCAAACATTTGTCAACTGATAAAATATTGGTGATAATAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGGGTCTAGCTTTGGCTAC</pcr_primer_p1>
		<pcr_primer_p2>TCATGTTTCGATACTGGTACTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAAGGGTCTAGCTTTGGCTACTCACTGAAAAGGGAGAGAGGAGGTTTTTGGAACATTATCCAGTTGGATAACGACTAATTTTTTCGGAGAGGGGGGGGGGCGATCTAAACCAATCAGCTGATTTGATGGAAAATGAAAGGGGCGATGGAAGAAAAATGAATGAACGGAAACAAGGAAACAAGTATAGTTAGAAGAATTTTTGAGAAAATAGTGATAGGAAGAAATCAGAGTACCAGTATCGAAACATGA</canonical_amplicon>
		<polymorphic_amplicon>TAAGGGTCTAGCTTTGGCTACTCACTGAAAAGGGAGAGAGGAGGTTTTTGGAACATTATCCAGTTGGATAACGACTAATTTTTTCGGAGAGGGGGGGGGGCGATCTAAACCAATCAGCTGATTTGATGGAAAATGAARGGGGCGATGGAAGAAAAATGAATGAACGGAAACAAGGAAACAAGTATAGTTAGAAGAATTTTTGAGAAAATAGTGATAGGAAGAAATCAGAGTACCAGTATCGAAACATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16247</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>386041</contig_pos>
        <strand>+</strand>
        <context>GTTGGATAAC[A/G]ACTAATTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACTGAAAAGGGAGAGAGGAGGTTTTTGGAACATTATCCAGTTGGATAAC</left_flank>
        <right_flank>ACTAATTTTTTCGGAGAGGGGGGGGGGCGATCTAAACCAATCAGCTGATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAAATATTCTTTATGTCCCTGTCCTACGCCCCTTGTCATTGCCAATAGCGGCTTGTTTATCCGCTTCGGTGCGTTTATTTTGTCAACGAGATTAAAACAGCTTGTGTCCCGCCTGTCTCCCCTCTGGACGGTAAAAACTATTTTACGGTTTTGCATATTGGTTGGCTAGTTAGCGAAAACGAAACTATATGAATATGTGAAAAAACAAAAAAACATGGTAATTTGTTATGAAAATCCTTCTATCTCCTCTCGAACCGTCCGCCCTCCTCCCGTTCGAAAATTGATGTATCTCACTCTAGTGGTAATAGAGTAAAGCCAACAAGTTTTTTATAGATTTCGCGCCCAATCATTCGGGATAGTTTTGGATGGAAAACGAAGGATGAGGAGGGGGAGGACGAGGAACGGGTAATTTGGCGTTTCTTTTTTAAGGGTCTAGCTTTGGCTACTCACTGAAAAGGGAGAGAGGAGGTTTTTGGAACATTATCCAGTTGGATAACGACTAATTTTTTCGGAGAGGGGGGGGGGCGATCTAAACCAATCAGCTGATTTGATGGAAAATGAAAGGGGCGATGGAAGAAAAATGAATGAACGGAAACAAGGAAACAAGTATAGTTAGAAGAATTTTTGAGAAAATAGTGATAGGAAGAAATCAGAGTACCAGTATCGAAACATGATTTGGATGGTTTCGGAAAACTGGGTGGTCAGAAAATGTTTTTTTTAAGTTGGTCAGTTGGAAATTTGATTCATAACAAGTTCTTGTACAAAGTTTGGCTCCTGTTTTCTAGAGAAAATGAAATTTGGGTTGTGTTTCCTAGGATTTCAAGGATTTTGGAATGACTTCAAATTGTAGGCACGAAAAAAACCTAAACGGAAAGTGAATTTCCAGATCTCTGAAAATGTATGGCTGGAAGAAAATGTATTCGTGGATCCTTGAGAATTTTCACACCTAGGCATACAATAGCGTATTTTCTCTAATAGATCCGTTTGATTTGAGCTCA</canonical>
            <polymorphic>CCAAAATATTCTTTATGTCCCTGTCCTACGCCCCTTGTCATTGCCAATAGCGGCTTGTTTATCCGCTTCGGTGCGTTTATTTTGTCAACGAGATTAAAACAGCTTGTGTCCCGCCTGTCTCCCCTCTGGACGGTAAAAACTATTTTACGGTTTTGCATATTGGTTGGCTAGTTAGCGAAAACGAAACTATATGAATATGTGAAAAAACAAAAAAACATGGTAATTTGTTATGAAAATCCTTCTATCTCCTCTCGAACCGTCCGCCCTCCTCCCGTTCGAAAATTGATGTATCTCACTCTAGTGGTAATAGAGTAAAGCCAACAAGTTTTTTATAGATTTCGCGCCCAATCATTCGGGATAGTTTTGGATGGAAAACGAAGGATGAGGAGGGGGAGGACGAGGAACGGGTAATTTGGCGTTTCTTTTTTAAGGGTCTAGCTTTGGCTACTCACTGAAAAGGGAGAGAGGAGGTTTTTGGAACATTATCCAGTTGGATAACRACTAATTTTTTCGGAGAGGGGGGGGGGCGATCTAAACCAATCAGCTGATTTGATGGAAAATGAAAGGGGCGATGGAAGAAAAATGAATGAACGGAAACAAGGAAACAAGTATAGTTAGAAGAATTTTTGAGAAAATAGTGATAGGAAGAAATCAGAGTACCAGTATCGAAACATGATTTGGATGGTTTCGGAAAACTGGGTGGTCAGAAAATGTTTTTTTTAAGTTGGTCAGTTGGAAATTTGATTCATAACAAGTTCTTGTACAAAGTTTGGCTCCTGTTTTCTAGAGAAAATGAAATTTGGGTTGTGTTTCCTAGGATTTCAAGGATTTTGGAATGACTTCAAATTGTAGGCACGAAAAAAACCTAAACGGAAAGTGAATTTCCAGATCTCTGAAAATGTATGGCTGGAAGAAAATGTATTCGTGGATCCTTGAGAATTTTCACACCTAGGCATACAATAGCGTATTTTCTCTAATAGATCCGTTTGATTTGAGCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGGGTCTAGCTTTGGCTAC</pcr_primer_p1>
		<pcr_primer_p2>TCATGTTTCGATACTGGTACTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAAGGGTCTAGCTTTGGCTACTCACTGAAAAGGGAGAGAGGAGGTTTTTGGAACATTATCCAGTTGGATAACGACTAATTTTTTCGGAGAGGGGGGGGGGCGATCTAAACCAATCAGCTGATTTGATGGAAAATGAAAGGGGCGATGGAAGAAAAATGAATGAACGGAAACAAGGAAACAAGTATAGTTAGAAGAATTTTTGAGAAAATAGTGATAGGAAGAAATCAGAGTACCAGTATCGAAACATGA</canonical_amplicon>
		<polymorphic_amplicon>TAAGGGTCTAGCTTTGGCTACTCACTGAAAAGGGAGAGAGGAGGTTTTTGGAACATTATCCAGTTGGATAACRACTAATTTTTTCGGAGAGGGGGGGGGGCGATCTAAACCAATCAGCTGATTTGATGGAAAATGAAAGGGGCGATGGAAGAAAAATGAATGAACGGAAACAAGGAAACAAGTATAGTTAGAAGAATTTTTGAGAAAATAGTGATAGGAAGAAATCAGAGTACCAGTATCGAAACATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16248</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>385998</contig_pos>
        <strand></strand>
        <context>ACTCACTGAA[A/G]RGGGAGAGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTAATTTGGCGTTTCTTTTTTAAGGGTCTAGCTTTGGCTACTCACTGAA</left_flank>
        <right_flank>AGGGAGAGAGGAGGTTTTTGGAACATTATCCAGTTGGATAACGACTAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGAAGAAGAAGACTGTACACAAATTTTTTTTGGAAATATGCCAAAATATTCTTTATGTCCCTGTCCTACGCCCCTTGTCATTGCCAATAGCGGCTTGTTTATCCGCTTCGGTGCGTTTATTTTGTCAACGAGATTAAAACAGCTTGTGTCCCGCCTGTCTCCCCTCTGGACGGTAAAAACTATTTTACGGTTTTGCATATTGGTTGGCTAGTTAGCGAAAACGAAACTATATGAATATGTGAAAAAACAAAAAAACATGGTAATTTGTTATGAAAATCCTTCTATCTCCTCTCGAACCGTCCGCCCTCCTCCCGTTCGAAAATTGATGTATCTCACTCTAGTGGTAATAGAGTAAAGCCAACAAGTTTTTTATAGATTTCGCGCCCAATCATTCGGGATAGTTTTGGATGGAAAACGAAGGATGAGGAGGGGGAGGACGAGGAACGGGTAATTTGGCGTTTCTTTTTTAAGGGTCTAGCTTTGGCTACTCACTGAAAAGGGAGAGAGGAGGTTTTTGGAACATTATCCAGTTGGATAACGACTAATTTTTTCGGAGAGGGGGGGGGGCGATCTAAACCAATCAGCTGATTTGATGGAAAATGAAAGGGGCGATGGAAGAAAAATGAATGAACGGAAACAAGGAAACAAGTATAGTTAGAAGAATTTTTGAGAAAATAGTGATAGGAAGAAATCAGAGTACCAGTATCGAAACATGATTTGGATGGTTTCGGAAAACTGGGTGGTCAGAAAATGTTTTTTTTAAGTTGGTCAGTTGGAAATTTGATTCATAACAAGTTCTTGTACAAAGTTTGGCTCCTGTTTTCTAGAGAAAATGAAATTTGGGTTGTGTTTCCTAGGATTTCAAGGATTTTGGAATGACTTCAAATTGTAGGCACGAAAAAAACCTAAACGGAAAGTGAATTTCCAGATCTCTGAAAATGTATGGCTGGAAGAAAATGTATTCGTGGATCCTTGAGAATTTTCACACCTAGGCATA</canonical>
            <polymorphic>AAAAGAAGAAGAAGACTGTACACAAATTTTTTTTGGAAATATGCCAAAATATTCTTTATGTCCCTGTCCTACGCCCCTTGTCATTGCCAATAGCGGCTTGTTTATCCGCTTCGGTGCGTTTATTTTGTCAACGAGATTAAAACAGCTTGTGTCCCGCCTGTCTCCCCTCTGGACGGTAAAAACTATTTTACGGTTTTGCATATTGGTTGGCTAGTTAGCGAAAACGAAACTATATGAATATGTGAAAAAACAAAAAAACATGGTAATTTGTTATGAAAATCCTTCTATCTCCTCTCGAACCGTCCGCCCTCCTCCCGTTCGAAAATTGATGTATCTCACTCTAGTGGTAATAGAGTAAAGCCAACAAGTTTTTTATAGATTTCGCGCCCAATCATTCGGGATAGTTTTGGATGGAAAACGAAGGATGAGGAGGGGGAGGACGAGGAACGGGTAATTTGGCGTTTCTTTTTTAAGGGTCTAGCTTTGGCTACTCACTGAARAGGGAGAGAGGAGGTTTTTGGAACATTATCCAGTTGGATAACGACTAATTTTTTCGGAGAGGGGGGGGGGCGATCTAAACCAATCAGCTGATTTGATGGAAAATGAAAGGGGCGATGGAAGAAAAATGAATGAACGGAAACAAGGAAACAAGTATAGTTAGAAGAATTTTTGAGAAAATAGTGATAGGAAGAAATCAGAGTACCAGTATCGAAACATGATTTGGATGGTTTCGGAAAACTGGGTGGTCAGAAAATGTTTTTTTTAAGTTGGTCAGTTGGAAATTTGATTCATAACAAGTTCTTGTACAAAGTTTGGCTCCTGTTTTCTAGAGAAAATGAAATTTGGGTTGTGTTTCCTAGGATTTCAAGGATTTTGGAATGACTTCAAATTGTAGGCACGAAAAAAACCTAAACGGAAAGTGAATTTCCAGATCTCTGAAAATGTATGGCTGGAAGAAAATGTATTCGTGGATCCTTGAGAATTTTCACACCTAGGCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTAATTTGGCGTTTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCTGATTTCTTCCTATCACTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTAATTTGGCGTTTCTTTTTTAAGGGTCTAGCTTTGGCTACTCACTGAAAAGGGAGAGAGGAGGTTTTTGGAACATTATCCAGTTGGATAACGACTAATTTTTTCGGAGAGGGGGGGGGGCGATCTAAACCAATCAGCTGATTTGATGGAAAATGAAAGGGGCGATGGAAGAAAAATGAATGAACGGAAACAAGGAAACAAGTATAGTTAGAAGAATTTTTGAGAAAATAGTGATAGGAAGAAATCAGA</canonical_amplicon>
		<polymorphic_amplicon>GGTAATTTGGCGTTTCTTTTTTAAGGGTCTAGCTTTGGCTACTCACTGAARAGGGAGAGAGGAGGTTTTTGGAACATTATCCAGTTGGATAACGACTAATTTTTTCGGAGAGGGGGGGGGGCGATCTAAACCAATCAGCTGATTTGATGGAAAATGAAAGGGGCGATGGAAGAAAAATGAATGAACGGAAACAAGGAAACAAGTATAGTTAGAAGAATTTTTGAGAAAATAGTGATAGGAAGAAATCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16249</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>385862</contig_pos>
        <strand>+</strand>
        <context>AGTAAAGCCA[A/G]CAAGTTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCGTTCGAAAATTGATGTATCTCACTCTAGTGGTAATAGAGTAAAGCCA</left_flank>
        <right_flank>CAAGTTTTTTATAGATTTCGCGCCCAATCATTCGGGATAGTTTTGGATGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGGGGTTTTTTTGATAAAAAATCGCGAAAAAAAGTGAGGAGAGTGATATAAATGATTCGGCGATCAGTGACGTCGTATACAACTTGACTGATCCACTCCCTTTCAAAAATTTACAAAATATAAAAATGAAAGAGAAAAGAAGAAGAAGACTGTACACAAATTTTTTTTGGAAATATGCCAAAATATTCTTTATGTCCCTGTCCTACGCCCCTTGTCATTGCCAATAGCGGCTTGTTTATCCGCTTCGGTGCGTTTATTTTGTCAACGAGATTAAAACAGCTTGTGTCCCGCCTGTCTCCCCTCTGGACGGTAAAAACTATTTTACGGTTTTGCATATTGGTTGGCTAGTTAGCGAAAACGAAACTATATGAATATGTGAAAAAACAAAAAAACATGGTAATTTGTTATGAAAATCCTTCTATCTCCTCTCGAACCGTCCGCCCTCCTCCCGTTCGAAAATTGATGTATCTCACTCTAGTGGTAATAGAGTAAAGCCAACAAGTTTTTTATAGATTTCGCGCCCAATCATTCGGGATAGTTTTGGATGGAAAACGAAGGATGAGGAGGGGGAGGACGAGGAACGGGTAATTTGGCGTTTCTTTTTTAAGGGTCTAGCTTTGGCTACTCACTGAAAAGGGAGAGAGGAGGTTTTTGGAACATTATCCAGTTGGATAACGACTAATTTTTTCGGAGAGGGGGGGGGGCGATCTAAACCAATCAGCTGATTTGATGGAAAATGAAAGGGGCGATGGAAGAAAAATGAATGAACGGAAACAAGGAAACAAGTATAGTTAGAAGAATTTTTGAGAAAATAGTGATAGGAAGAAATCAGAGTACCAGTATCGAAACATGATTTGGATGGTTTCGGAAAACTGGGTGGTCAGAAAATGTTTTTTTTAAGTTGGTCAGTTGGAAATTTGATTCATAACAAGTTCTTGTACAAAGTTTGGCTCCTGTTTTCTAGAGAAAATGAAATTTGGGTTGTGTTTCCTAGGATT</canonical>
            <polymorphic>TGGGGGGTTTTTTTGATAAAAAATCGCGAAAAAAAGTGAGGAGAGTGATATAAATGATTCGGCGATCAGTGACGTCGTATACAACTTGACTGATCCACTCCCTTTCAAAAATTTACAAAATATAAAAATGAAAGAGAAAAGAAGAAGAAGACTGTACACAAATTTTTTTTGGAAATATGCCAAAATATTCTTTATGTCCCTGTCCTACGCCCCTTGTCATTGCCAATAGCGGCTTGTTTATCCGCTTCGGTGCGTTTATTTTGTCAACGAGATTAAAACAGCTTGTGTCCCGCCTGTCTCCCCTCTGGACGGTAAAAACTATTTTACGGTTTTGCATATTGGTTGGCTAGTTAGCGAAAACGAAACTATATGAATATGTGAAAAAACAAAAAAACATGGTAATTTGTTATGAAAATCCTTCTATCTCCTCTCGAACCGTCCGCCCTCCTCCCGTTCGAAAATTGATGTATCTCACTCTAGTGGTAATAGAGTAAAGCCARCAAGTTTTTTATAGATTTCGCGCCCAATCATTCGGGATAGTTTTGGATGGAAAACGAAGGATGAGGAGGGGGAGGACGAGGAACGGGTAATTTGGCGTTTCTTTTTTAAGGGTCTAGCTTTGGCTACTCACTGAAAAGGGAGAGAGGAGGTTTTTGGAACATTATCCAGTTGGATAACGACTAATTTTTTCGGAGAGGGGGGGGGGCGATCTAAACCAATCAGCTGATTTGATGGAAAATGAAAGGGGCGATGGAAGAAAAATGAATGAACGGAAACAAGGAAACAAGTATAGTTAGAAGAATTTTTGAGAAAATAGTGATAGGAAGAAATCAGAGTACCAGTATCGAAACATGATTTGGATGGTTTCGGAAAACTGGGTGGTCAGAAAATGTTTTTTTTAAGTTGGTCAGTTGGAAATTTGATTCATAACAAGTTCTTGTACAAAGTTTGGCTCCTGTTTTCTAGAGAAAATGAAATTTGGGTTGTGTTTCCTAGGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTTTACGGTTTTGCATATTG</pcr_primer_p1>
		<pcr_primer_p2>GTTTTCCATCCAAAACTATCC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CTATTTTACGGTTTTGCATATTGGTTGGCTAGTTAGCGAAAACGAAACTATATGAATATGTGAAAAAACAAAAAAACATGGTAATTTGTTATGAAAATCCTTCTATCTCCTCTCGAACCGTCCGCCCTCCTCCCGTTCGAAAATTGATGTATCTCACTCTAGTGGTAATAGAGTAAAGCCAACAAGTTTTTTATAGATTTCGCGCCCAATCATTCGGGATAGTTTTGGATGGAAAAC</canonical_amplicon>
		<polymorphic_amplicon>CTATTTTACGGTTTTGCATATTGGTTGGCTAGTTAGCGAAAACGAAACTATATGAATATGTGAAAAAACAAAAAAACATGGTAATTTGTTATGAAAATCCTTCTATCTCCTCTCGAACCGTCCGCCCTCCTCCCGTTCGAAAATTGATGTATCTCACTCTAGTGGTAATAGAGTAAAGCCARCAAGTTTTTTATAGATTTCGCGCCCAATCATTCGGGATAGTTTTGGATGGAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16250</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>444475</contig_pos>
        <strand>+</strand>
        <context>GAATCGACGT[G/T]TCATGTATCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATGCAGAAATAGTATGCAGAAATGTGTAACTTCTATTCAGAATCGACGT</left_flank>
        <right_flank>TCATGTATCGCTCGAGGTCTGAGGAAACTGTCTCTGGCATCAAATAGTGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATCCAGCAGCTCTTCAGAATTGAAATCCTTGAATCTGGCCCATAACAAAATCTATACAATCTCGAGTCGTTCTTTTTCCGATTTGGATAACTTGCAACAACTTCGGCTTAGTCATAATAACATTCGAACTATACCGTCCATGACTTTTGCCAATTTGAAAAATCTACGCTATCTAGATCTATCTCATAATAGAATCATCAAAATTCTACCGAGTGCTCTATACCAACTGCCAGCCCTCGATGTACTTCATTTGGATCAGAACAACTTGAATGAAATCGATCGAGACGCGTTCCGTTCTTTCGGCGATCTTCAAACATTCAAACTGTCTCACAACGCATTCAGAAGATTCAGTTGCGAGTTTTTGGGCAGCATTACACAGATACATCAGCTGGACTTGAGTTCGAATCAGATCAATGAGTGAGTCTTCGATATCTATGCACTGCATAGTATGCAGAAATAGTATGCAGAAATGTGTAACTTCTATTCAGAATCGACGTGTCATGTATCGCTCGAGGTCTGAGGAAACTGTCTCTGGCATCAAATAGTGTTGAAAAAATACATAGGAAGCTGCTACAAGATGCTACTGAACTGGTCTCAATCGATATTTCTCATAATGGAATTATCGATGTGGATAGTGATGCGTTTGCCGAGTGTCGAAAATTAGCAGATGTGAAGCTTTCGCACAATTACATCAGGAATTTGTGGAAGGGCACTTTTCAATATCAGGTTGGACTATCTTTTTTATCAGTGCTAAAAGAGTTCAGTTTTCAGGAGAAACTCCATTCTCTGGACATTTCTTTCAACGATATTCTCTTTCTGCATCAAGGCACATTTGGCAAGAACAACATTCTACAGCTACATTTGAATAACAATAAACTGTCGAGAATTCCACTAGAAGCACTTTCATCTACAATGACATCGTTGCACTTACTGAATCTCTCTTTCAACAACATAAAGTAAGCGAAACTCATTCGTTCAGATTGATAGTATTAATGATT</canonical>
            <polymorphic>GGATCCAGCAGCTCTTCAGAATTGAAATCCTTGAATCTGGCCCATAACAAAATCTATACAATCTCGAGTCGTTCTTTTTCCGATTTGGATAACTTGCAACAACTTCGGCTTAGTCATAATAACATTCGAACTATACCGTCCATGACTTTTGCCAATTTGAAAAATCTACGCTATCTAGATCTATCTCATAATAGAATCATCAAAATTCTACCGAGTGCTCTATACCAACTGCCAGCCCTCGATGTACTTCATTTGGATCAGAACAACTTGAATGAAATCGATCGAGACGCGTTCCGTTCTTTCGGCGATCTTCAAACATTCAAACTGTCTCACAACGCATTCAGAAGATTCAGTTGCGAGTTTTTGGGCAGCATTACACAGATACATCAGCTGGACTTGAGTTCGAATCAGATCAATGAGTGAGTCTTCGATATCTATGCACTGCATAGTATGCAGAAATAGTATGCAGAAATGTGTAACTTCTATTCAGAATCGACGTKTCATGTATCGCTCGAGGTCTGAGGAAACTGTCTCTGGCATCAAATAGTGTTGAAAAAATACATAGGAAGCTGCTACAAGATGCTACTGAACTGGTCTCAATCGATATTTCTCATAATGGAATTATCGATGTGGATAGTGATGCGTTTGCCGAGTGTCGAAAATTAGCAGATGTGAAGCTTTCGCACAATTACATCAGGAATTTGTGGAAGGGCACTTTTCAATATCAGGTTGGACTATCTTTTTTATCAGTGCTAAAAGAGTTCAGTTTTCAGGAGAAACTCCATTCTCTGGACATTTCTTTCAACGATATTCTCTTTCTGCATCAAGGCACATTTGGCAAGAACAACATTCTACAGCTACATTTGAATAACAATAAACTGTCGAGAATTCCACTAGAAGCACTTTCATCTACAATGACATCGTTGCACTTACTGAATCTCTCTTTCAACAACATAAAGTAAGCGAAACTCATTCGTTCAGATTGATAGTATTAATGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 287 209</canonical_bands>
                <polymorphic_bands>713 287</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>217 115 83 79 72 62 49 46 44 38 35 26 24 21 19 19 16 11 9 8 7</canonical_bands>
                <polymorphic_bands>217 115 83 79 73 72 62 46 44 38 35 26 21 19 19 16 11 9 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACACAGATACATCAGCTGGAC</pcr_primer_p1>
		<pcr_primer_p2>TCCATTATGAGAAATATCGATTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TACACAGATACATCAGCTGGACTTGAGTTCGAATCAGATCAATGAGTGAGTCTTCGATATCTATGCACTGCATAGTATGCAGAAATAGTATGCAGAAATGTGTAACTTCTATTCAGAATCGACGTGTCATGTATCGCTCGAGGTCTGAGGAAACTGTCTCTGGCATCAAATAGTGTTGAAAAAATACATAGGAAGCTGCTACAAGATGCTACTGAACTGGTCTCAATCGATATTTCTCATAATGGA</canonical_amplicon>
		<polymorphic_amplicon>TACACAGATACATCAGCTGGACTTGAGTTCGAATCAGATCAATGAGTGAGTCTTCGATATCTATGCACTGCATAGTATGCAGAAATAGTATGCAGAAATGTGTAACTTCTATTCAGAATCGACGTKTCATGTATCGCTCGAGGTCTGAGGAAACTGTCTCTGGCATCAAATAGTGTTGAAAAAATACATAGGAAGCTGCTACAAGATGCTACTGAACTGGTCTCAATCGATATTTCTCATAATGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16251</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>445521</contig_pos>
        <strand>+</strand>
        <context>TCCGAAATTC[C/T]ATATACTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATACAACAGCTATATCAAGTAAGTTGAAACTACTTCGGAATCCGAAATTC</left_flank>
        <right_flank>ATATACTTTCAGTTAGAGACACTTCACATATCGAATATGCCATTCCTGAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCTATCATTCGCCAATAATAAAGTGGACTCAATCGAAGACGGAGCTTTTGAGAATCTGTTGAGTTTGAAGATCCTAGATCTCTCTAATAATCCAGTGACTTCATGGAGCCCCACAGCTTTCCGTGATTTAAGCCACTCCATAAGCTCCATCAACATGGCTAACACCGGTCTATTTTCAATGCCTAAATTCAGTCATCGGTCCATTCAATCGCTGAATATCAGCTGGTGAGAAAAGCTTTTTTAACAGATGAGATGATTTTTTTTTCATTCAGCAACAAAATCTACGAGCTATCGGAACGAGATTTGGCACCACTGACCAAACTTGTGGCTCTCGATATCTCTCACAATAATTTGAAACAAGTCAGTCCTCTAGCATTCGAACCTCTGATTCATCTAAAACAACTAAACATCTCTGCCAACCCGATCACTCATCTTACGAATGATCACATACAACAGCTATATCAAGTAAGTTGAAACTACTTCGGAATCCGAAATTCCATATACTTTCAGTTAGAGACACTTCACATATCGAATATGCCATTCCTGATCCGTCTTCCCGATTCACATGCATTCAGTCAGATGAATAACTTGAAGAACTTCTATGTAAGATTTCCCCCCCCCCCCCCCCCACCTCCCGAACTATATTTCTAAAATGCTGCAATTTCAGCTATACAACATTCCTGACATGGCTCGTCCTTATCAAATCAGCTCAATACTTTCAAATCTACCACCGTTACATACGATTTATGTGGATATCAAGGAACCAGTTCTTGATAGACAGTTCTACACAGCTGATACAAGATTACTACGACATTTAGTAGTGTTCGGAAAGAACATGACGCAGCTTGATGTTGGCGCTTTTGCAACAGTTCGAGGATTCAAGGTTCGAATAGAAGTTCATAACTCGTCTATTCAAGAGTTTCCAACGAGAATATTCGAAACGCTGACAGGAATCTCAATTTTGTCGTTGAGGTATTTTTGTAAAGATCGAACATTTT</canonical>
            <polymorphic>GTTCTATCATTCGCCAATAATAAAGTGGACTCAATCGAAGACGGAGCTTTTGAGAATCTGTTGAGTTTGAAGATCCTAGATCTCTCTAATAATCCAGTGACTTCATGGAGCCCCACAGCTTTCCGTGATTTAAGCCACTCCATAAGCTCCATCAACATGGCTAACACCGGTCTATTTTCAATGCCTAAATTCAGTCATCGGTCCATTCAATCGCTGAATATCAGCTGGTGAGAAAAGCTTTTTTAACAGATGAGATGATTTTTTTTTCATTCAGCAACAAAATCTACGAGCTATCGGAACGAGATTTGGCACCACTGACCAAACTTGTGGCTCTCGATATCTCTCACAATAATTTGAAACAAGTCAGTCCTCTAGCATTCGAACCTCTGATTCATCTAAAACAACTAAACATCTCTGCCAACCCGATCACTCATCTTACGAATGATCACATACAACAGCTATATCAAGTAAGTTGAAACTACTTCGGAATCCGAAATTCYATATACTTTCAGTTAGAGACACTTCACATATCGAATATGCCATTCCTGATCCGTCTTCCCGATTCACATGCATTCAGTCAGATGAATAACTTGAAGAACTTCTATGTAAGATTTCCCCCCCCCCCCCCCCCACCTCCCGAACTATATTTCTAAAATGCTGCAATTTCAGCTATACAACATTCCTGACATGGCTCGTCCTTATCAAATCAGCTCAATACTTTCAAATCTACCACCGTTACATACGATTTATGTGGATATCAAGGAACCAGTTCTTGATAGACAGTTCTACACAGCTGATACAAGATTACTACGACATTTAGTAGTGTTCGGAAAGAACATGACGCAGCTTGATGTTGGCGCTTTTGCAACAGTTCGAGGATTCAAGGTTCGAATAGAAGTTCATAACTCGTCTATTCAAGAGTTTCCAACGAGAATATTCGAAACGCTGACAGGAATCTCAATTTTGTCGTTGAGGTATTTTTGTAAAGATCGAACATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATTTGAAACAAGTCAGTCCTC</pcr_primer_p1>
		<pcr_primer_p2>TTCTTCAAGTTATTCATCTGACTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAATTTGAAACAAGTCAGTCCTCTAGCATTCGAACCTCTGATTCATCTAAAACAACTAAACATCTCTGCCAACCCGATCACTCATCTTACGAATGATCACATACAACAGCTATATCAAGTAAGTTGAAACTACTTCGGAATCCGAAATTCCATATACTTTCAGTTAGAGACACTTCACATATCGAATATGCCATTCCTGATCCGTCTTCCCGATTCACATGCATTCAGTCAGATGAATAACTTGAAGAA</canonical_amplicon>
		<polymorphic_amplicon>TAATTTGAAACAAGTCAGTCCTCTAGCATTCGAACCTCTGATTCATCTAAAACAACTAAACATCTCTGCCAACCCGATCACTCATCTTACGAATGATCACATACAACAGCTATATCAAGTAAGTTGAAACTACTTCGGAATCCGAAATTCYATATACTTTCAGTTAGAGACACTTCACATATCGAATATGCCATTCCTGATCCGTCTTCCCGATTCACATGCATTCAGTCAGATGAATAACTTGAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16252</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>446994</contig_pos>
        <strand>+</strand>
        <context>AATCAAAGCT[G/T]CCAAATTCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTTAAACGACGGAAGGGTTTGTCTGAGTGTTTTCTCGTCAATCAAAGCT</left_flank>
        <right_flank>CCAAATTCTCGCGATATTTGGCAAGAATCGTGTTTCTGTACGAGAAGATA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCCCATTCCTTCTCTATCACGGGTTTCTAACAAATTTCGAATTTCCTGATTTTGTCTACGGTTAATGAATCTTTCCCATTTTCCTGGTAAACTTACTTCTGGAATACTTTGATGTGAACATTTGTGAGGAACAATAATTTGGAGCATTTCTTCTCGATATCCTCAAACGTTTCTCCTTGGCCTGAAACAGACAATTCAATTTTCCACATCCAAACAGCGATTTCTCACCAAAAACTTTGTAGACTTGCTTGAAAAATAGCTGAAGGAAGAACGTCAGCTCGTCGCTACGGCATCCACCAATGATGTAAATGATTCCATTTCGTCGTGAAATCATGCCTTTCTGCTTGTTGTTGATGAGCAACTTTCCACTAAGCAAACGCAAAAGTATCGGCACAACGACTGATCGATGCTCGTCGGCTACCTGAACGTCACCTTCGTCATTGGACAGTTTAAACGACGGAAGGGTTTGTCTGAGTGTTTTCTCGTCAATCAAAGCTGCCAAATTCTCGCGATATTTGGCAAGAATCGTGTTTCTGTACGAGAAGATACAAGAGAGCGCAGCTTTTTGAATACTCTCATAACGTGATCCAAGAAGTTGTTCATACATTTGCAGAATTTGCGGCTCCATATAAACAGACTTTGCAGCATGGAACTTGGCGTAAACGCTCAGAAGAGCCGTCAACGTTTTCAGAACAACCGTTGTTTCTTGCTTTTGGTTCGAAAGGGCTTCTTCTGATTCTTCTGGTTGTTCGTCGTCATCTTCCTTTTCACCTTCCTCGCCTTTCGGAATAAAAAAAGTTGGAACCACAGAAGCCGTCAAACGCATATATTCTTCGTAGATATTAAGTAGAAGAGGACTGATAACTCGTGTTCTTCTTTCAACAACATCTGGAATGGTTTCCATGAAATTGAACAGTTGCATTCTGGCATTCACAAAATCGGAACGATTCGTTTGATCGATGCCGACAAGCCTGCCTTTCTCCGTTTCCCGCTCTCCA</canonical>
            <polymorphic>TTTCCCATTCCTTCTCTATCACGGGTTTCTAACAAATTTCGAATTTCCTGATTTTGTCTACGGTTAATGAATCTTTCCCATTTTCCTGGTAAACTTACTTCTGGAATACTTTGATGTGAACATTTGTGAGGAACAATAATTTGGAGCATTTCTTCTCGATATCCTCAAACGTTTCTCCTTGGCCTGAAACAGACAATTCAATTTTCCACATCCAAACAGCGATTTCTCACCAAAAACTTTGTAGACTTGCTTGAAAAATAGCTGAAGGAAGAACGTCAGCTCGTCGCTACGGCATCCACCAATGATGTAAATGATTCCATTTCGTCGTGAAATCATGCCTTTCTGCTTGTTGTTGATGAGCAACTTTCCACTAAGCAAACGCAAAAGTATCGGCACAACGACTGATCGATGCTCGTCGGCTACCTGAACGTCACCTTCGTCATTGGACAGTTTAAACGACGGAAGGGTTTGTCTGAGTGTTTTCTCGTCAATCAAAGCTKCCAAATTCTCGCGATATTTGGCAAGAATCGTGTTTCTGTACGAGAAGATACAAGAGAGCGCAGCTTTTTGAATACTCTCATAACGTGATCCAAGAAGTTGTTCATACATTTGCAGAATTTGCGGCTCCATATAAACAGACTTTGCAGCATGGAACTTGGCGTAAACGCTCAGAAGAGCCGTCAACGTTTTCAGAACAACCGTTGTTTCTTGCTTTTGGTTCGAAAGGGCTTCTTCTGATTCTTCTGGTTGTTCGTCGTCATCTTCCTTTTCACCTTCCTCGCCTTTCGGAATAAAAAAAGTTGGAACCACAGAAGCCGTCAAACGCATATATTCTTCGTAGATATTAAGTAGAAGAGGACTGATAACTCGTGTTCTTCTTTCAACAACATCTGGAATGGTTTCCATGAAATTGAACAGTTGCATTCTGGCATTCACAAAATCGGAACGATTCGTTTGATCGATGCCGACAAGCCTGCCTTTCTCCGTTTCCCGCTCTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 353 63 61 23</canonical_bands>
                <polymorphic_bands>563 353 61 23</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>497 356 84 63</canonical_bands>
                <polymorphic_bands>560 356 84</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTAAGCAAACGCAAAAGTATC</pcr_primer_p1>
		<pcr_primer_p2>ATTCTGCAAATGTATGAACAACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTAAGCAAACGCAAAAGTATCGGCACAACGACTGATCGATGCTCGTCGGCTACCTGAACGTCACCTTCGTCATTGGACAGTTTAAACGACGGAAGGGTTTGTCTGAGTGTTTTCTCGTCAATCAAAGCTGCCAAATTCTCGCGATATTTGGCAAGAATCGTGTTTCTGTACGAGAAGATACAAGAGAGCGCAGCTTTTTGAATACTCTCATAACGTGATCCAAGAAGTTGTTCATACATTTGCAGAAT</canonical_amplicon>
		<polymorphic_amplicon>ACTAAGCAAACGCAAAAGTATCGGCACAACGACTGATCGATGCTCGTCGGCTACCTGAACGTCACCTTCGTCATTGGACAGTTTAAACGACGGAAGGGTTTGTCTGAGTGTTTTCTCGTCAATCAAAGCTKCCAAATTCTCGCGATATTTGGCAAGAATCGTGTTTCTGTACGAGAAGATACAAGAGAGCGCAGCTTTTTGAATACTCTCATAACGTGATCCAAGAAGTTGTTCATACATTTGCAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16265</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>717491</contig_pos>
        <strand>+</strand>
        <context>ACTTCCACCA[A/G]TGGTGTTAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACGAAACGGAGCGTTGATTTATAGTTCAAAATCTGCTAGACTTCCACCA</left_flank>
        <right_flank>TGGTGTTAGGTGGTAATCAGGAATCAGGATTGAGGAGTGGGTAAGTGATT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAGGAGCGATTCGAAGTGTAAGGAAAAATGGAAAGAAACCTCATGTTGTTACAACCAATATTGAGCATCCGTCGATTATAAATCCACTGCAGAGAAGAGAAAATGATGGAGAAATTAGTTAGTTCTCTGGTAACATTTGAATTCTAATCTGTTTCATTCCAGCCGTAACTTATGTATCTATCAACCCATTAACGGGTTTCGTCACTCCTGAATCTGTTCTCCAGGCTGTTACTTCTGACACGTGTCTGGTCACTGTCATGTTGGCGAATAACGAAACTGGAGTTCTGCAGCCAGTTTCTGAAATCTGTCAATTGATTCGAAACAAGTTCAAAGAAAATTCTCCATTTCTACATTCAGATGTCGCACAGGCGGCTGGAAAGATTCCAATCGATGTCAAATTGCTTGGTGTTAATGCGGTTACTGTAGTTGGTCATAAGTTTTACGGACCACGAAACGGAGCGTTGATTTATAGTTCAAAATCTGCTAGACTTCCACCAATGGTGTTAGGTGGTAATCAGGAATCAGGATTGAGGAGTGGGTAAGTGATTTGAATTCATGATTCATATTTAATTCCAAATCTTTAGAACTGAAAACACACCGATGATAGTTGGATTGGGAGAGGCTGCTAGAATTTACAATGAAGGATCCTCGAATATTGAGAGTGTGCTCACTCAAAATAGAGACTACTTTGAAGAGCTTTTAGTGGTTCGTATAAAATTTTCAATCTGATTTGGATGTAAAGTTTTCAGAAACGTCTTCGTAATTCTCACTTGATTCATTTCCTCGGATCACCTCGTCTTCCGAATACTTCAAGTGTTGCTTTCTTGGATTACCCTTCTCACGGTTGTGATCTTCTGGAAAAGTGAGATTCTAAATGTTTTCTATTCTTGTCCGGCGGCGATGAATTAGGTGGCCGAAATTTTAATTAAAGGCACATCGTCAGCCCTGTAGCGAAAATATTATCCTTGTCAGAGAAAAAAAAGGTTGAGTCGAAGTTT</canonical>
            <polymorphic>TGAAGGAGCGATTCGAAGTGTAAGGAAAAATGGAAAGAAACCTCATGTTGTTACAACCAATATTGAGCATCCGTCGATTATAAATCCACTGCAGAGAAGAGAAAATGATGGAGAAATTAGTTAGTTCTCTGGTAACATTTGAATTCTAATCTGTTTCATTCCAGCCGTAACTTATGTATCTATCAACCCATTAACGGGTTTCGTCACTCCTGAATCTGTTCTCCAGGCTGTTACTTCTGACACGTGTCTGGTCACTGTCATGTTGGCGAATAACGAAACTGGAGTTCTGCAGCCAGTTTCTGAAATCTGTCAATTGATTCGAAACAAGTTCAAAGAAAATTCTCCATTTCTACATTCAGATGTCGCACAGGCGGCTGGAAAGATTCCAATCGATGTCAAATTGCTTGGTGTTAATGCGGTTACTGTAGTTGGTCATAAGTTTTACGGACCACGAAACGGAGCGTTGATTTATAGTTCAAAATCTGCTAGACTTCCACCARTGGTGTTAGGTGGTAATCAGGAATCAGGATTGAGGAGTGGGTAAGTGATTTGAATTCATGATTCATATTTAATTCCAAATCTTTAGAACTGAAAACACACCGATGATAGTTGGATTGGGAGAGGCTGCTAGAATTTACAATGAAGGATCCTCGAATATTGAGAGTGTGCTCACTCAAAATAGAGACTACTTTGAAGAGCTTTTAGTGGTTCGTATAAAATTTTCAATCTGATTTGGATGTAAAGTTTTCAGAAACGTCTTCGTAATTCTCACTTGATTCATTTCCTCGGATCACCTCGTCTTCCGAATACTTCAAGTGTTGCTTTCTTGGATTACCCTTCTCACGGTTGTGATCTTCTGGAAAAGTGAGATTCTAAATGTTTTCTATTCTTGTCCGGCGGCGATGAATTAGGTGGCCGAAATTTTAATTAAAGGCACATCGTCAGCCCTGTAGCGAAAATATTATCCTTGTCAGAGAAAAAAAAGGTTGAGTCGAAGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTTAATGCGGTTACTGTAGTT</pcr_primer_p1>
		<pcr_primer_p2>GAGGATCCTTCATTGTAAATTCT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GTGTTAATGCGGTTACTGTAGTTGGTCATAAGTTTTACGGACCACGAAACGGAGCGTTGATTTATAGTTCAAAATCTGCTAGACTTCCACCAATGGTGTTAGGTGGTAATCAGGAATCAGGATTGAGGAGTGGGTAAGTGATTTGAATTCATGATTCATATTTAATTCCAAATCTTTAGAACTGAAAACACACCGATGATAGTTGGATTGGGAGAGGCTGCTAGAATTTACAATGAAGGATCCTC</canonical_amplicon>
		<polymorphic_amplicon>GTGTTAATGCGGTTACTGTAGTTGGTCATAAGTTTTACGGACCACGAAACGGAGCGTTGATTTATAGTTCAAAATCTGCTAGACTTCCACCARTGGTGTTAGGTGGTAATCAGGAATCAGGATTGAGGAGTGGGTAAGTGATTTGAATTCATGATTCATATTTAATTCCAAATCTTTAGAACTGAAAACACACCGATGATAGTTGGATTGGGAGAGGCTGCTAGAATTTACAATGAAGGATCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16266</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>756650</contig_pos>
        <strand>+</strand>
        <context>TCTCGCGACC[C/T]CATTTTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAACCATTGCCGCTGGCTGTTTTTGGTTCGTATTCCTGCCTCTCGCGACC</left_flank>
        <right_flank>CATTTTTTTTCATTTTCTGTAGTTTTTTTTAATACTTGTATAGTCTTCCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAACATAAAAGATTTCACAGCTCGATAAGTTCTTTCTCCCGTGGCAGCAGTAGCACCATCAACAGTAGAATAACCAGATTTCAAAAGTTGCAGTACTTCTTCAAACATTCACTGTCTGTGTACACAACCATACTCCCCACTCTATTCTCTGCCGTCTCTTCAGCATATATTCCTCACTTCAACTTCCGCGCCTTCGTCAGCTGATCAACGTCTTGTGGCACACAAAAGTTGTTCTCATGTGCTTTCCGCATCTTCATCATCTTTCATCCCACGCGTAGGGTTTCCGCATCCTAGGGCCTGATATTTTTACGAATCAATCACAATACTACTTTTGATGAAATTTCAACGTCTGTTTCTCTTCTCCCTCTTCATCTCTCAGCGGGAATCGGGGGGGGGGGGGGGGGGGGCAGTGGCGATTTTGTAAACATTCATGTTTGTGTCGGCCGTCAACCATTGCCGCTGGCTGTTTTTGGTTCGTATTCCTGCCTCTCGCGACCTCATTTTTTTTCATTTTCTGTAGTTTTTTTTAATACTTGTATAGTCTTCCACCGAAGTAAATGAAAAATCGTCTTTTGAGCTTCTATTTCTGTGATCTTCTAAGAATTTGCAATCCAAATAGCTCTCAATGAAAATTCAACGACAATATGGTCCAGAAATTAAAAATTTTCACCTCGACCCCTTCAGGATTACTGTACCTCCCAAATATCGGACAAGTATATGGTTTTCTGCAAATTTTCGAAAAAAAGACAACAATTAGAATACACGGTTACAAAATTCACAATTCACAAAAAGACGAAAGTTTTCGAAAATACTAGAAAAGTGATATGTGGAAATAGAAAAAGAGACTGTTGACTGAAGAGTAAATATTGATGAGTTTGATATCGGAGAAAAACAGTTTGATATGCACGTCGTTAGTTTTTTTCAGGTACTTGTCTTTTTGTTTGATTGCTCAGCATTTCAAGATTCAGAGTCATCTAGTTTCTCCCAATTTTTCACAT</canonical>
            <polymorphic>TCTAACATAAAAGATTTCACAGCTCGATAAGTTCTTTCTCCCGTGGCAGCAGTAGCACCATCAACAGTAGAATAACCAGATTTCAAAAGTTGCAGTACTTCTTCAAACATTCACTGTCTGTGTACACAACCATACTCCCCACTCTATTCTCTGCCGTCTCTTCAGCATATATTCCTCACTTCAACTTCCGCGCCTTCGTCAGCTGATCAACGTCTTGTGGCACACAAAAGTTGTTCTCATGTGCTTTCCGCATCTTCATCATCTTTCATCCCACGCGTAGGGTTTCCGCATCCTAGGGCCTGATATTTTTACGAATCAATCACAATACTACTTTTGATGAAATTTCAACGTCTGTTTCTCTTCTCCCTCTTCATCTCTCAGCGGGAATCGGGGGGGGGGGGGGGGGGGGCAGTGGCGATTTTGTAAACATTCATGTTTGTGTCGGCCGTCAACCATTGCCGCTGGCTGTTTTTGGTTCGTATTCCTGCCTCTCGCGACCYCATTTTTTTTCATTTTCTGTAGTTTTTTTTAATACTTGTATAGTCTTCCACCGAAGTAAATGAAAAATCGTCTTTTGAGCTTCTATTTCTGTGATCTTCTAAGAATTTGCAATCCAAATAGCTCTCAATGAAAATTCAACGACAATATGGTCCAGAAATTAAAAATTTTCACCTCGACCCCTTCAGGATTACTGTACCTCCCAAATATCGGACAAGTATATGGTTTTCTGCAAATTTTCGAAAAAAAGACAACAATTAGAATACACGGTTACAAAATTCACAATTCACAAAAAGACGAAAGTTTTCGAAAATACTAGAAAAGTGATATGTGGAAATAGAAAAAGAGACTGTTGACTGAAGAGTAAATATTGATGAGTTTGATATCGGAGAAAAACAGTTTGATATGCACGTCGTTAGTTTTTTTCAGGTACTTGTCTTTTTGTTTGATTGCTCAGCATTTCAAGATTCAGAGTCATCTAGTTTCTCCCAATTTTTCACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATTTCAACGTCTGTTTCTC</pcr_primer_p1>
		<pcr_primer_p2>AATAGAAGCTCAAAAGACGATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAATTTCAACGTCTGTTTCTCTTCTCCCTCTTCATCTCTCAGCGGGAATCGGGGGGGGGGGGGGGGGGGGCAGTGGCGATTTTGTAAACATTCATGTTTGTGTCGGCCGTCAACCATTGCCGCTGGCTGTTTTTGGTTCGTATTCCTGCCTCTCGCGACCTCATTTTTTTTCATTTTCTGTAGTTTTTTTTAATACTTGTATAGTCTTCCACCGAAGTAAATGAAAAATCGTCTTTTGAGCTTCTATT</canonical_amplicon>
		<polymorphic_amplicon>GAAATTTCAACGTCTGTTTCTCTTCTCCCTCTTCATCTCTCAGCGGGAATCGGGGGGGGGGGGGGGGGGGGCAGTGGCGATTTTGTAAACATTCATGTTTGTGTCGGCCGTCAACCATTGCCGCTGGCTGTTTTTGGTTCGTATTCCTGCCTCTCGCGACCYCATTTTTTTTCATTTTCTGTAGTTTTTTTTAATACTTGTATAGTCTTCCACCGAAGTAAATGAAAAATCGTCTTTTGAGCTTCTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16284</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>759566</contig_pos>
        <strand>+</strand>
        <context>TGAGTAAGCC[C/G]ATTTGCATAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TATGCTTTTGATGAATAGTTCAAAGTTGAGTGAGTGACGATGAGTAAGCC</left_flank>
        <right_flank>ATTTGCATAGTAATAAGCGGGACTCCCCGGGCTGGTTTTTGATGTCTTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCATCCACTCTCTGATAATTGTTCTGTTTCATTGATGGCACGACTGAAGATATTTATTTCACGAACAACTTAAAGACTGTAGGAAGTTAAAATCTAAAAGGCTGTAAATCGATCTGAAAATGAAAATGGAAAAAATCTAGTAAATTTTTGAATTTTTGAATTTCATTGTTCTCCAAACCGGACAAGAATCTCTACAGTATTCTCAAGGGAAATCTTCGAAATTGTTGAATAGTCTGTAGATGGTTTCAAATGCAAACACACATGACATTGATCCACAATTAATCTTTTTTATTTTAAAGCTCTAAATGACGAAGGCGATCTGAGTACACCATTTCGAGTGCATTTCCTCCGTTGATAGCCACTTGAGCCAACTCTTATCACCGTGCGGCCTCCGATACTTTCGTTTTAAATGTTTCCATTTTCCCATTTATTTTTTTCGAATCGTCATATGCTTTTGATGAATAGTTCAAAGTTGAGTGAGTGACGATGAGTAAGCCGATTTGCATAGTAATAAGCGGGACTCCCCGGGCTGGTTTTTGATGTCTTCCAGGTGGGATTTTCATCTTTTCGTGGTTCTTTTCTTTTTTCCCTCTCTTTTCTTTTTTCCCTCCGAGATGATAATTATTAGACTCGTCGACGTCGCCGTTTGGAGACAACCGTGCCAGCCATATCCTTTCACTGAATTCTCTCGAGCAAATAGCCGGGATGAAATGAAGAGCTCATAAACCGAATTGGTGCATTTCAGAGTTTTCTTGTTTTTGAGAAAATGCAACTTGCATCTCTATTTGCGCCTCCATCAACCTAGATCTTTAGTTTTTAGTGTTCTGGGTTCAGTTCCATGGATCTTGAATCAACATTTTTCTGAAATTCCAAAACTTTCGTATATATTTACTCCACGAGTACTCGAAAAAATATTTTTGAAAATGATGTTTCATGAATTCTCATATGTTTTGTAACTGATGGAGTAGTCTATCCGTGGCTCACTCTTCCGAACTCTT</canonical>
            <polymorphic>TTTCATCCACTCTCTGATAATTGTTCTGTTTCATTGATGGCACGACTGAAGATATTTATTTCACGAACAACTTAAAGACTGTAGGAAGTTAAAATCTAAAAGGCTGTAAATCGATCTGAAAATGAAAATGGAAAAAATCTAGTAAATTTTTGAATTTTTGAATTTCATTGTTCTCCAAACCGGACAAGAATCTCTACAGTATTCTCAAGGGAAATCTTCGAAATTGTTGAATAGTCTGTAGATGGTTTCAAATGCAAACACACATGACATTGATCCACAATTAATCTTTTTTATTTTAAAGCTCTAAATGACGAAGGCGATCTGAGTACACCATTTCGAGTGCATTTCCTCCGTTGATAGCCACTTGAGCCAACTCTTATCACCGTGCGGCCTCCGATACTTTCGTTTTAAATGTTTCCATTTTCCCATTTATTTTTTTCGAATCGTCATATGCTTTTGATGAATAGTTCAAAGTTGAGTGAGTGACGATGAGTAAGCCSATTTGCATAGTAATAAGCGGGACTCCCCGGGCTGGTTTTTGATGTCTTCCAGGTGGGATTTTCATCTTTTCGTGGTTCTTTTCTTTTTTCCCTCTCTTTTCTTTTTTCCCTCCGAGATGATAATTATTAGACTCGTCGACGTCGCCGTTTGGAGACAACCGTGCCAGCCATATCCTTTCACTGAATTCTCTCGAGCAAATAGCCGGGATGAAATGAAGAGCTCATAAACCGAATTGGTGCATTTCAGAGTTTTCTTGTTTTTGAGAAAATGCAACTTGCATCTCTATTTGCGCCTCCATCAACCTAGATCTTTAGTTTTTAGTGTTCTGGGTTCAGTTCCATGGATCTTGAATCAACATTTTTCTGAAATTCCAAAACTTTCGTATATATTTACTCCACGAGTACTCGAAAAAATATTTTTGAAAATGATGTTTCATGAATTCTCATATGTTTTGTAACTGATGGAGTAGTCTATCCGTGGCTCACTCTTCCGAACTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAGTACACCATTTCGAGTG</pcr_primer_p1>
		<pcr_primer_p2>AAAAGATGAAAATCCCACCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTGAGTACACCATTTCGAGTGCATTTCCTCCGTTGATAGCCACTTGAGCCAACTCTTATCACCGTGCGGCCTCCGATACTTTCGTTTTAAATGTTTCCATTTTCCCATTTATTTTTTTCGAATCGTCATATGCTTTTGATGAATAGTTCAAAGTTGAGTGAGTGACGATGAGTAAGCCGATTTGCATAGTAATAAGCGGGACTCCCCGGGCTGGTTTTTGATGTCTTCCAGGTGGGATTTTCATCTTTT</canonical_amplicon>
		<polymorphic_amplicon>CTGAGTACACCATTTCGAGTGCATTTCCTCCGTTGATAGCCACTTGAGCCAACTCTTATCACCGTGCGGCCTCCGATACTTTCGTTTTAAATGTTTCCATTTTCCCATTTATTTTTTTCGAATCGTCATATGCTTTTGATGAATAGTTCAAAGTTGAGTGAGTGACGATGAGTAAGCCSATTTGCATAGTAATAAGCGGGACTCCCCGGGCTGGTTTTTGATGTCTTCCAGGTGGGATTTTCATCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16329</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>856426</contig_pos>
        <strand>+</strand>
        <context>TCAAAAAGCA[A/G]GTCATGGATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAAAACCGTGAGCCAAAATCCAAAGCTTCCAGATCAATATCAAAAAGCA</left_flank>
        <right_flank>GTCATGGATACGAAAACTGAATCACACAGAAACAAGTGCGAACACATGTC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCAAGTTCCCGATCACTTTGAAAATTTGGGAAGTTACAAAACAGACCTAGATTGAAAACTTTGCCTTCACAATATTTTTGAAAATTGTTCAACTTTTGGCGATTTTTGAAAGACCCTATGATTTCAGCACCAAAACGGGTCAAAAAGGGTGTCTTTCAGAAATCGGCAAATATCTGAAAAGTTAAGAATTTTCAATAAATTCTGTGAATACAAAGTTTTCAATCTAGGTATGTATCACATTCTACAAAATTTTCAAAGTGATCGGAAACTTGGCAGCTCCAGACTTCTGAAAATGGTTCAAATGGTCGGCACAAAGTTGACAGTCCGAGTGCACCTTTATTAGAGGTTTCAAGGTTCTTAGGGAATAATGTGAGCATGCTTGGAAGCTAAACCAGATAGTCATCGCTATTTTCTTCTAAGCATCACATTAAATTATTTACAAAAAACCGAAAACCGTGAGCCAAAATCCAAAGCTTCCAGATCAATATCAAAAAGCAGGTCATGGATACGAAAACTGAATCACACAGAAACAAGTGCGAACACATGTCGTTTAGAGAAGTATCTCCCTTGCTGCTCAATTTTCTTCGACAAACACTAACATTTTCTAATTATCGCCGCTCGTCTTTCTTTTCTTCTTTTTTTGCCCCCAGATGTGTTGAGCCATCCGAAATCTGAGAGCAATTCTTAATGTTTCAATCATGACAAGCACAGATATTGAAATCATCAATCGTTTGAAAACTAATTGCTTGTCACAAAAGAGTGCTATCAGTTGAAAGGAGAAGATTGAAGTCATGGAAAAATGAATGAAAGTGGTTAGATGGAAACTTGAAGAAGCCGATTTAATATTTCGAAACCTAACCTTTCTTTTCCGTTTTCAAAAAGACTTTTTGTGGTTGTCTAGAAAAGAGAGAAAAAAAGTCAGATGGACATGACAAAAAATAACACAAGCGGGCCTTCGTCAGATTTAGTCTTCTCCGTAGGATCTGCACCAATTGAAT</canonical>
            <polymorphic>TGTCAAGTTCCCGATCACTTTGAAAATTTGGGAAGTTACAAAACAGACCTAGATTGAAAACTTTGCCTTCACAATATTTTTGAAAATTGTTCAACTTTTGGCGATTTTTGAAAGACCCTATGATTTCAGCACCAAAACGGGTCAAAAAGGGTGTCTTTCAGAAATCGGCAAATATCTGAAAAGTTAAGAATTTTCAATAAATTCTGTGAATACAAAGTTTTCAATCTAGGTATGTATCACATTCTACAAAATTTTCAAAGTGATCGGAAACTTGGCAGCTCCAGACTTCTGAAAATGGTTCAAATGGTCGGCACAAAGTTGACAGTCCGAGTGCACCTTTATTAGAGGTTTCAAGGTTCTTAGGGAATAATGTGAGCATGCTTGGAAGCTAAACCAGATAGTCATCGCTATTTTCTTCTAAGCATCACATTAAATTATTTACAAAAAACCGAAAACCGTGAGCCAAAATCCAAAGCTTCCAGATCAATATCAAAAAGCARGTCATGGATACGAAAACTGAATCACACAGAAACAAGTGCGAACACATGTCGTTTAGAGAAGTATCTCCCTTGCTGCTCAATTTTCTTCGACAAACACTAACATTTTCTAATTATCGCCGCTCGTCTTTCTTTTCTTCTTTTTTTGCCCCCAGATGTGTTGAGCCATCCGAAATCTGAGAGCAATTCTTAATGTTTCAATCATGACAAGCACAGATATTGAAATCATCAATCGTTTGAAAACTAATTGCTTGTCACAAAAGAGTGCTATCAGTTGAAAGGAGAAGATTGAAGTCATGGAAAAATGAATGAAAGTGGTTAGATGGAAACTTGAAGAAGCCGATTTAATATTTCGAAACCTAACCTTTCTTTTCCGTTTTCAAAAAGACTTTTTGTGGTTGTCTAGAAAAGAGAGAAAAAAAGTCAGATGGACATGACAAAAAATAACACAAGCGGGCCTTCGTCAGATTTAGTCTTCTCCGTAGGATCTGCACCAATTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTTATTAGAGGTTTCAAGGTT</pcr_primer_p1>
		<pcr_primer_p2>GCAAGGGAGATACTTCTCTAAAC</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>CCTTTATTAGAGGTTTCAAGGTTCTTAGGGAATAATGTGAGCATGCTTGGAAGCTAAACCAGATAGTCATCGCTATTTTCTTCTAAGCATCACATTAAATTATTTACAAAAAACCGAAAACCGTGAGCCAAAATCCAAAGCTTCCAGATCAATATCAAAAAGCAGGTCATGGATACGAAAACTGAATCACACAGAAACAAGTGCGAACACATGTCGTTTAGAGAAGTATCTCCCTTGC</canonical_amplicon>
		<polymorphic_amplicon>CCTTTATTAGAGGTTTCAAGGTTCTTAGGGAATAATGTGAGCATGCTTGGAAGCTAAACCAGATAGTCATCGCTATTTTCTTCTAAGCATCACATTAAATTATTTACAAAAAACCGAAAACCGTGAGCCAAAATCCAAAGCTTCCAGATCAATATCAAAAAGCARGTCATGGATACGAAAACTGAATCACACAGAAACAAGTGCGAACACATGTCGTTTAGAGAAGTATCTCCCTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16330</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>856511</contig_pos>
        <strand>+</strand>
        <context>GCTCAATTTT[C/T]TTCGACAAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTGCGAACACATGTCGTTTAGAGAAGTATCTCCCTTGCTGCTCAATTTT</left_flank>
        <right_flank>TTCGACAAACACTAACATTTTCTAATTATCGCCGCTCGTCTTTCTTTTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGTTCAACTTTTGGCGATTTTTGAAAGACCCTATGATTTCAGCACCAAAACGGGTCAAAAAGGGTGTCTTTCAGAAATCGGCAAATATCTGAAAAGTTAAGAATTTTCAATAAATTCTGTGAATACAAAGTTTTCAATCTAGGTATGTATCACATTCTACAAAATTTTCAAAGTGATCGGAAACTTGGCAGCTCCAGACTTCTGAAAATGGTTCAAATGGTCGGCACAAAGTTGACAGTCCGAGTGCACCTTTATTAGAGGTTTCAAGGTTCTTAGGGAATAATGTGAGCATGCTTGGAAGCTAAACCAGATAGTCATCGCTATTTTCTTCTAAGCATCACATTAAATTATTTACAAAAAACCGAAAACCGTGAGCCAAAATCCAAAGCTTCCAGATCAATATCAAAAAGCAGGTCATGGATACGAAAACTGAATCACACAGAAACAAGTGCGAACACATGTCGTTTAGAGAAGTATCTCCCTTGCTGCTCAATTTTCTTCGACAAACACTAACATTTTCTAATTATCGCCGCTCGTCTTTCTTTTCTTCTTTTTTTGCCCCCAGATGTGTTGAGCCATCCGAAATCTGAGAGCAATTCTTAATGTTTCAATCATGACAAGCACAGATATTGAAATCATCAATCGTTTGAAAACTAATTGCTTGTCACAAAAGAGTGCTATCAGTTGAAAGGAGAAGATTGAAGTCATGGAAAAATGAATGAAAGTGGTTAGATGGAAACTTGAAGAAGCCGATTTAATATTTCGAAACCTAACCTTTCTTTTCCGTTTTCAAAAAGACTTTTTGTGGTTGTCTAGAAAAGAGAGAAAAAAAGTCAGATGGACATGACAAAAAATAACACAAGCGGGCCTTCGTCAGATTTAGTCTTCTCCGTAGGATCTGCACCAATTGAATTGGCAAGGAGGGCGACCAACGGGAGGAGACACGACGACACAATGACATTGTTGCTAACTTCGGACCCACAGATAGAGAAGAAATT</canonical>
            <polymorphic>ATTGTTCAACTTTTGGCGATTTTTGAAAGACCCTATGATTTCAGCACCAAAACGGGTCAAAAAGGGTGTCTTTCAGAAATCGGCAAATATCTGAAAAGTTAAGAATTTTCAATAAATTCTGTGAATACAAAGTTTTCAATCTAGGTATGTATCACATTCTACAAAATTTTCAAAGTGATCGGAAACTTGGCAGCTCCAGACTTCTGAAAATGGTTCAAATGGTCGGCACAAAGTTGACAGTCCGAGTGCACCTTTATTAGAGGTTTCAAGGTTCTTAGGGAATAATGTGAGCATGCTTGGAAGCTAAACCAGATAGTCATCGCTATTTTCTTCTAAGCATCACATTAAATTATTTACAAAAAACCGAAAACCGTGAGCCAAAATCCAAAGCTTCCAGATCAATATCAAAAAGCAGGTCATGGATACGAAAACTGAATCACACAGAAACAAGTGCGAACACATGTCGTTTAGAGAAGTATCTCCCTTGCTGCTCAATTTTYTTCGACAAACACTAACATTTTCTAATTATCGCCGCTCGTCTTTCTTTTCTTCTTTTTTTGCCCCCAGATGTGTTGAGCCATCCGAAATCTGAGAGCAATTCTTAATGTTTCAATCATGACAAGCACAGATATTGAAATCATCAATCGTTTGAAAACTAATTGCTTGTCACAAAAGAGTGCTATCAGTTGAAAGGAGAAGATTGAAGTCATGGAAAAATGAATGAAAGTGGTTAGATGGAAACTTGAAGAAGCCGATTTAATATTTCGAAACCTAACCTTTCTTTTCCGTTTTCAAAAAGACTTTTTGTGGTTGTCTAGAAAAGAGAGAAAAAAAGTCAGATGGACATGACAAAAAATAACACAAGCGGGCCTTCGTCAGATTTAGTCTTCTCCGTAGGATCTGCACCAATTGAATTGGCAAGGAGGGCGACCAACGGGAGGAGACACGACGACACAATGACATTGTTGCTAACTTCGGACCCACAGATAGAGAAGAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTGAATCACACAGAAACAAGT</pcr_primer_p1>
		<pcr_primer_p2>CTCTTTTGTGACAAGCAATTAGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AACTGAATCACACAGAAACAAGTGCGAACACATGTCGTTTAGAGAAGTATCTCCCTTGCTGCTCAATTTTCTTCGACAAACACTAACATTTTCTAATTATCGCCGCTCGTCTTTCTTTTCTTCTTTTTTTGCCCCCAGATGTGTTGAGCCATCCGAAATCTGAGAGCAATTCTTAATGTTTCAATCATGACAAGCACAGATATTGAAATCATCAATCGTTTGAAAACTAATTGCTTGTCACAAAAGAG</canonical_amplicon>
		<polymorphic_amplicon>AACTGAATCACACAGAAACAAGTGCGAACACATGTCGTTTAGAGAAGTATCTCCCTTGCTGCTCAATTTTYTTCGACAAACACTAACATTTTCTAATTATCGCCGCTCGTCTTTCTTTTCTTCTTTTTTTGCCCCCAGATGTGTTGAGCCATCCGAAATCTGAGAGCAATTCTTAATGTTTCAATCATGACAAGCACAGATATTGAAATCATCAATCGTTTGAAAACTAATTGCTTGTCACAAAAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16331</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>856656</contig_pos>
        <strand>+</strand>
        <context>AAATCATCAA[C/T]CGTTTGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCAATTCTTAATGTTTCAATCATGACAAGCACAGATATTGAAATCATCAA</left_flank>
        <right_flank>CGTTTGAAAACTAATTGCTTGTCACAAAAGAGTGCTATCAGTTGAAAGGA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGTATCACATTCTACAAAATTTTCAAAGTGATCGGAAACTTGGCAGCTCCAGACTTCTGAAAATGGTTCAAATGGTCGGCACAAAGTTGACAGTCCGAGTGCACCTTTATTAGAGGTTTCAAGGTTCTTAGGGAATAATGTGAGCATGCTTGGAAGCTAAACCAGATAGTCATCGCTATTTTCTTCTAAGCATCACATTAAATTATTTACAAAAAACCGAAAACCGTGAGCCAAAATCCAAAGCTTCCAGATCAATATCAAAAAGCAGGTCATGGATACGAAAACTGAATCACACAGAAACAAGTGCGAACACATGTCGTTTAGAGAAGTATCTCCCTTGCTGCTCAATTTTCTTCGACAAACACTAACATTTTCTAATTATCGCCGCTCGTCTTTCTTTTCTTCTTTTTTTGCCCCCAGATGTGTTGAGCCATCCGAAATCTGAGAGCAATTCTTAATGTTTCAATCATGACAAGCACAGATATTGAAATCATCAATCGTTTGAAAACTAATTGCTTGTCACAAAAGAGTGCTATCAGTTGAAAGGAGAAGATTGAAGTCATGGAAAAATGAATGAAAGTGGTTAGATGGAAACTTGAAGAAGCCGATTTAATATTTCGAAACCTAACCTTTCTTTTCCGTTTTCAAAAAGACTTTTTGTGGTTGTCTAGAAAAGAGAGAAAAAAAGTCAGATGGACATGACAAAAAATAACACAAGCGGGCCTTCGTCAGATTTAGTCTTCTCCGTAGGATCTGCACCAATTGAATTGGCAAGGAGGGCGACCAACGGGAGGAGACACGACGACACAATGACATTGTTGCTAACTTCGGACCCACAGATAGAGAAGAAATTACTCGTATGGCCAAAGTACATTGAAAAGAAGAAGAAGAAGAAGAAAACCGGAGAACTGATGGACCCGTGAATTGGAGGGAAGAAGAAGAACCAAATGATTGAAAAAAAAGAAGAAGAAATAGAAAATGAATAGGGAAACATGAAC</canonical>
            <polymorphic>TATGTATCACATTCTACAAAATTTTCAAAGTGATCGGAAACTTGGCAGCTCCAGACTTCTGAAAATGGTTCAAATGGTCGGCACAAAGTTGACAGTCCGAGTGCACCTTTATTAGAGGTTTCAAGGTTCTTAGGGAATAATGTGAGCATGCTTGGAAGCTAAACCAGATAGTCATCGCTATTTTCTTCTAAGCATCACATTAAATTATTTACAAAAAACCGAAAACCGTGAGCCAAAATCCAAAGCTTCCAGATCAATATCAAAAAGCAGGTCATGGATACGAAAACTGAATCACACAGAAACAAGTGCGAACACATGTCGTTTAGAGAAGTATCTCCCTTGCTGCTCAATTTTCTTCGACAAACACTAACATTTTCTAATTATCGCCGCTCGTCTTTCTTTTCTTCTTTTTTTGCCCCCAGATGTGTTGAGCCATCCGAAATCTGAGAGCAATTCTTAATGTTTCAATCATGACAAGCACAGATATTGAAATCATCAAYCGTTTGAAAACTAATTGCTTGTCACAAAAGAGTGCTATCAGTTGAAAGGAGAAGATTGAAGTCATGGAAAAATGAATGAAAGTGGTTAGATGGAAACTTGAAGAAGCCGATTTAATATTTCGAAACCTAACCTTTCTTTTCCGTTTTCAAAAAGACTTTTTGTGGTTGTCTAGAAAAGAGAGAAAAAAAGTCAGATGGACATGACAAAAAATAACACAAGCGGGCCTTCGTCAGATTTAGTCTTCTCCGTAGGATCTGCACCAATTGAATTGGCAAGGAGGGCGACCAACGGGAGGAGACACGACGACACAATGACATTGTTGCTAACTTCGGACCCACAGATAGAGAAGAAATTACTCGTATGGCCAAAGTACATTGAAAAGAAGAAGAAGAAGAAGAAAACCGGAGAACTGATGGACCCGTGAATTGGAGGGAAGAAGAAGAACCAAATGATTGAAAAAAAAGAAGAAGAAATAGAAAATGAATAGGGAAACATGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACACATGTCGTTTAGAGAAGT</pcr_primer_p1>
		<pcr_primer_p2>CAATCTTCTCCTTTCAACTGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAACACATGTCGTTTAGAGAAGTATCTCCCTTGCTGCTCAATTTTCTTCGACAAACACTAACATTTTCTAATTATCGCCGCTCGTCTTTCTTTTCTTCTTTTTTTGCCCCCAGATGTGTTGAGCCATCCGAAATCTGAGAGCAATTCTTAATGTTTCAATCATGACAAGCACAGATATTGAAATCATCAATCGTTTGAAAACTAATTGCTTGTCACAAAAGAGTGCTATCAGTTGAAAGGAGAAGATTG</canonical_amplicon>
		<polymorphic_amplicon>GAACACATGTCGTTTAGAGAAGTATCTCCCTTGCTGCTCAATTTTCTTCGACAAACACTAACATTTTCTAATTATCGCCGCTCGTCTTTCTTTTCTTCTTTTTTTGCCCCCAGATGTGTTGAGCCATCCGAAATCTGAGAGCAATTCTTAATGTTTCAATCATGACAAGCACAGATATTGAAATCATCAAYCGTTTGAAAACTAATTGCTTGTCACAAAAGAGTGCTATCAGTTGAAAGGAGAAGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16332</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>860994</contig_pos>
        <strand>+</strand>
        <context>TTCTTGAGCG[A/G]TCCGCCCGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTGCCTCGGGCCATCTTCCAGGCGCACAAACAGACAAAATTCTTGAGCG</left_flank>
        <right_flank>TCCGCCCGTCCCGAGAAATCTCCTCCGAAAGAAAACTGGACAGACAAGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAAGGTTCGTCGAGAAGCTAAACTGCCCTGCAAAGAAAGATTTGAATCTTTTAGAAGAAAAAAGCCAATTTATCTGAATTCTCCACATTTTCCACATCACTCTGGTCAGATGATTCTAACCGATAGATGCAAATTCTAGCGAGGTTTTTGAATTTTACAAAAAATGCACCAAAATCAAATTGGGTGGGGCAAGGGGACCAAAAAGAAACCAAATTTTTTTTTTGAGAAAAATTGAAAAACGAAGAAGAACAAGAAGAAGAAGATGAAGAAAAAACTGGGTGGGAAGGGTCACACACTGAATATTGAATTACCCGGTGTCGACTGAAGACAATCGAATCGAGGATGAGAGAAATGAACTGTGTGCATGACTTCCAAAAGAACAAAAATCTCGAAACTTTAGTCTGTTGTCTCTGAGAGAATATAAGAAGGGAAACGTGAAGTTTTCTGGTTGCCTCGGGCCATCTTCCAGGCGCACAAACAGACAAAATTCTTGAGCGATCCGCCCGTCCCGAGAAATCTCCTCCGAAAGAAAACTGGACAGACAAGAAGAGCAAAAGCAGAGCAGTGAGGTTTTTTCCAGGTTATTAGTGTATATATGGTGTGTGAAGAGATGTGGTGAGTGGGTCCGCCTATGTATGTGCGAGTGGGTGCTCCTCGGGTAGATGTCGGAGAAGGATGGGTCTTCTGAAGCCAGCAGCAGCACAAGTTCATCAAGAATGAAAGAAAATGAAAAATGAGAAAAAATGGGCAAGGGAGGAATAAAATAAGAAAAAGAAGAAATAAGACACATCCCACAGACAGGAAGTAGGTTAAATTGAAGGGCTCGATATGGGATGGAAAGGTTATTCCTAAAGAAAGATACAGAGAAAAGTGGGAATCTCCAGGATTACGGTACTTTTTCAGTTCCTCGAACTCTCTGGTATTTTTTAAGTTTTTCTCGGACAGACCAGCAACGTCCTCAGAGATGATCAGATTTCGGAATTCCTAAAATTCCGACC</canonical>
            <polymorphic>CCAAAGGTTCGTCGAGAAGCTAAACTGCCCTGCAAAGAAAGATTTGAATCTTTTAGAAGAAAAAAGCCAATTTATCTGAATTCTCCACATTTTCCACATCACTCTGGTCAGATGATTCTAACCGATAGATGCAAATTCTAGCGAGGTTTTTGAATTTTACAAAAAATGCACCAAAATCAAATTGGGTGGGGCAAGGGGACCAAAAAGAAACCAAATTTTTTTTTTGAGAAAAATTGAAAAACGAAGAAGAACAAGAAGAAGAAGATGAAGAAAAAACTGGGTGGGAAGGGTCACACACTGAATATTGAATTACCCGGTGTCGACTGAAGACAATCGAATCGAGGATGAGAGAAATGAACTGTGTGCATGACTTCCAAAAGAACAAAAATCTCGAAACTTTAGTCTGTTGTCTCTGAGAGAATATAAGAAGGGAAACGTGAAGTTTTCTGGTTGCCTCGGGCCATCTTCCAGGCGCACAAACAGACAAAATTCTTGAGCGRTCCGCCCGTCCCGAGAAATCTCCTCCGAAAGAAAACTGGACAGACAAGAAGAGCAAAAGCAGAGCAGTGAGGTTTTTTCCAGGTTATTAGTGTATATATGGTGTGTGAAGAGATGTGGTGAGTGGGTCCGCCTATGTATGTGCGAGTGGGTGCTCCTCGGGTAGATGTCGGAGAAGGATGGGTCTTCTGAAGCCAGCAGCAGCACAAGTTCATCAAGAATGAAAGAAAATGAAAAATGAGAAAAAATGGGCAAGGGAGGAATAAAATAAGAAAAAGAAGAAATAAGACACATCCCACAGACAGGAAGTAGGTTAAATTGAAGGGCTCGATATGGGATGGAAAGGTTATTCCTAAAGAAAGATACAGAGAAAAGTGGGAATCTCCAGGATTACGGTACTTTTTCAGTTCCTCGAACTCTCTGGTATTTTTTAAGTTTTTCTCGGACAGACCAGCAACGTCCTCAGAGATGATCAGATTTCGGAATTCCTAAAATTCCGACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>498 470 32</canonical_bands>
                <polymorphic_bands>968 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTCCAAAAGAACAAAAATCTC</pcr_primer_p1>
		<pcr_primer_p2>ACCACATCTCTTCACACACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTCCAAAAGAACAAAAATCTCGAAACTTTAGTCTGTTGTCTCTGAGAGAATATAAGAAGGGAAACGTGAAGTTTTCTGGTTGCCTCGGGCCATCTTCCAGGCGCACAAACAGACAAAATTCTTGAGCGATCCGCCCGTCCCGAGAAATCTCCTCCGAAAGAAAACTGGACAGACAAGAAGAGCAAAAGCAGAGCAGTGAGGTTTTTTCCAGGTTATTAGTGTATATATGGTGTGTGAAGAGATGTGGT</canonical_amplicon>
		<polymorphic_amplicon>ACTTCCAAAAGAACAAAAATCTCGAAACTTTAGTCTGTTGTCTCTGAGAGAATATAAGAAGGGAAACGTGAAGTTTTCTGGTTGCCTCGGGCCATCTTCCAGGCGCACAAACAGACAAAATTCTTGAGCGRTCCGCCCGTCCCGAGAAATCTCCTCCGAAAGAAAACTGGACAGACAAGAAGAGCAAAAGCAGAGCAGTGAGGTTTTTTCCAGGTTATTAGTGTATATATGGTGTGTGAAGAGATGTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16333</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>861170</contig_pos>
        <strand>+</strand>
        <context>TGTCGGAGAA[A/G]GATGGGTCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCCGCCTATGTATGTGCGAGTGGGTGCTCCTCGGGTAGATGTCGGAGAA</left_flank>
        <right_flank>GATGGGTCTTCTGAAGCCAGCAGCAGCACAAGTTCATCAAGAATGAAAGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAATTGGGTGGGGCAAGGGGACCAAAAAGAAACCAAATTTTTTTTTTGAGAAAAATTGAAAAACGAAGAAGAACAAGAAGAAGAAGATGAAGAAAAAACTGGGTGGGAAGGGTCACACACTGAATATTGAATTACCCGGTGTCGACTGAAGACAATCGAATCGAGGATGAGAGAAATGAACTGTGTGCATGACTTCCAAAAGAACAAAAATCTCGAAACTTTAGTCTGTTGTCTCTGAGAGAATATAAGAAGGGAAACGTGAAGTTTTCTGGTTGCCTCGGGCCATCTTCCAGGCGCACAAACAGACAAAATTCTTGAGCGATCCGCCCGTCCCGAGAAATCTCCTCCGAAAGAAAACTGGACAGACAAGAAGAGCAAAAGCAGAGCAGTGAGGTTTTTTCCAGGTTATTAGTGTATATATGGTGTGTGAAGAGATGTGGTGAGTGGGTCCGCCTATGTATGTGCGAGTGGGTGCTCCTCGGGTAGATGTCGGAGAAGGATGGGTCTTCTGAAGCCAGCAGCAGCACAAGTTCATCAAGAATGAAAGAAAATGAAAAATGAGAAAAAATGGGCAAGGGAGGAATAAAATAAGAAAAAGAAGAAATAAGACACATCCCACAGACAGGAAGTAGGTTAAATTGAAGGGCTCGATATGGGATGGAAAGGTTATTCCTAAAGAAAGATACAGAGAAAAGTGGGAATCTCCAGGATTACGGTACTTTTTCAGTTCCTCGAACTCTCTGGTATTTTTTAAGTTTTTCTCGGACAGACCAGCAACGTCCTCAGAGATGATCAGATTTCGGAATTCCTAAAATTCCGACCATTTTCTGAAATATTCTGATCGGAATATTTCCGGTTTTTTTCTCGGAATTGGAGCTTTATGGACTACGGTATTACAAAGACGCAGGAAAAAATCTCTGTGTGGGTCTCGAGTGTAATAACCGTAAACACTAATAAAAGGGCATTCGAACCGCCAACTTCGAGTCAATTTTTCTCAG</canonical>
            <polymorphic>TCAAATTGGGTGGGGCAAGGGGACCAAAAAGAAACCAAATTTTTTTTTTGAGAAAAATTGAAAAACGAAGAAGAACAAGAAGAAGAAGATGAAGAAAAAACTGGGTGGGAAGGGTCACACACTGAATATTGAATTACCCGGTGTCGACTGAAGACAATCGAATCGAGGATGAGAGAAATGAACTGTGTGCATGACTTCCAAAAGAACAAAAATCTCGAAACTTTAGTCTGTTGTCTCTGAGAGAATATAAGAAGGGAAACGTGAAGTTTTCTGGTTGCCTCGGGCCATCTTCCAGGCGCACAAACAGACAAAATTCTTGAGCGATCCGCCCGTCCCGAGAAATCTCCTCCGAAAGAAAACTGGACAGACAAGAAGAGCAAAAGCAGAGCAGTGAGGTTTTTTCCAGGTTATTAGTGTATATATGGTGTGTGAAGAGATGTGGTGAGTGGGTCCGCCTATGTATGTGCGAGTGGGTGCTCCTCGGGTAGATGTCGGAGAARGATGGGTCTTCTGAAGCCAGCAGCAGCACAAGTTCATCAAGAATGAAAGAAAATGAAAAATGAGAAAAAATGGGCAAGGGAGGAATAAAATAAGAAAAAGAAGAAATAAGACACATCCCACAGACAGGAAGTAGGTTAAATTGAAGGGCTCGATATGGGATGGAAAGGTTATTCCTAAAGAAAGATACAGAGAAAAGTGGGAATCTCCAGGATTACGGTACTTTTTCAGTTCCTCGAACTCTCTGGTATTTTTTAAGTTTTTCTCGGACAGACCAGCAACGTCCTCAGAGATGATCAGATTTCGGAATTCCTAAAATTCCGACCATTTTCTGAAATATTCTGATCGGAATATTTCCGGTTTTTTTCTCGGAATTGGAGCTTTATGGACTACGGTATTACAAAGACGCAGGAAAAAATCTCTGTGTGGGTCTCGAGTGTAATAACCGTAAACACTAATAAAAGGGCATTCGAACCGCCAACTTCGAGTCAATTTTTCTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTGGACAGACAAGAAGAGC</pcr_primer_p1>
		<pcr_primer_p2>TTCTTCTTTTTCTTATTTTATTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AACTGGACAGACAAGAAGAGCAAAAGCAGAGCAGTGAGGTTTTTTCCAGGTTATTAGTGTATATATGGTGTGTGAAGAGATGTGGTGAGTGGGTCCGCCTATGTATGTGCGAGTGGGTGCTCCTCGGGTAGATGTCGGAGAAGGATGGGTCTTCTGAAGCCAGCAGCAGCACAAGTTCATCAAGAATGAAAGAAAATGAAAAATGAGAAAAAATGGGCAAGGGAGGAATAAAATAAGAAAAAGAAGAA</canonical_amplicon>
		<polymorphic_amplicon>AACTGGACAGACAAGAAGAGCAAAAGCAGAGCAGTGAGGTTTTTTCCAGGTTATTAGTGTATATATGGTGTGTGAAGAGATGTGGTGAGTGGGTCCGCCTATGTATGTGCGAGTGGGTGCTCCTCGGGTAGATGTCGGAGAARGATGGGTCTTCTGAAGCCAGCAGCAGCACAAGTTCATCAAGAATGAAAGAAAATGAAAAATGAGAAAAAATGGGCAAGGGAGGAATAAAATAAGAAAAAGAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16334</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>862314</contig_pos>
        <strand>+</strand>
        <context>CAAATATTTT[C/G]AGTGATTCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTCTCTTTCATTCCCTCTTGATTTCGGAAAACCTAGAATTCAAATATTTT</left_flank>
        <right_flank>AGTGATTCTGGAAAAGTGTTTGTGTATGTTTTAAAAAAGTTAATTGGTTC</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAGAGTGTTTACGGTAAATTAATTTTTTTTTCAAATCTTTTTGTCAATTTTTCACCTTTTTTTAAAATTTTTCTGATGGGAAAATGGGATTTCTATGTTAAAAATTGAATGTTAAAAATTCTGAAAGTCCGATATTACAAAATTTGGAATTTTGGCATTCCGAGTTTAAAAAAATTGGAATATTCTGGATTTCCGATATTTTGAAATCGGAATACTAGGAAAAATAGAAATTTTAAAATTCGGAATTTTCGAGATTCCAAATTCCGAAAAGGCCATTCCGATTATTCCTAGAGTTTTTAATTCGGAAACCTATAATGAGATTTCTTAAAGGAAATTCATAATCTTCAGAAGAATATAATAAAAACTGAACACCGAACCTTCAGAAGAAAACGACGTCTTCTGTAAGTGACACATCCCAATACCAGAATTTTCTATATACTTCCTATTCTCTCTTTCATTCCCTCTTGATTTCGGAAAACCTAGAATTCAAATATTTTCAGTGATTCTGGAAAAGTGTTTGTGTATGTTTTAAAAAAGTTAATTGGTTCGTTCTATTCAGCCGTGCTCGATAGAAACACACAAAAGAGAAACGTGTCAGATTTACGAGGATAAAAGGCGGGATCCGTTGAACATCGGGAAGCAGTAAAATGAAGGCAATAAAGAGGAGGGCTCACATTAGAATATAATTAGCATAATTAAATGAATGATTGGTCAGATGAAAAGAGAAATAGAGACGAAAAAGAAGAAGAAGAAACCCACAAGATTAGACTTTGTTTACATGTGTATTGGAATAGATAAAATGTGCTTAAAAATGATTTATTGTGTGTGCACTTTGATGGGTATTTATTGGTATTATACTATTGCAGAAATACCACAATTACCTTCACAAAAATCGAAAATAGAAACAAATGAAAAAGTAATAAAAATAGATGATGTCACTTCCTGGATGAATAATCACAACCACTAATTCACCCAAATTCATTCATGCAAAGTGTTTC</canonical>
            <polymorphic>ATTAGAGTGTTTACGGTAAATTAATTTTTTTTTCAAATCTTTTTGTCAATTTTTCACCTTTTTTTAAAATTTTTCTGATGGGAAAATGGGATTTCTATGTTAAAAATTGAATGTTAAAAATTCTGAAAGTCCGATATTACAAAATTTGGAATTTTGGCATTCCGAGTTTAAAAAAATTGGAATATTCTGGATTTCCGATATTTTGAAATCGGAATACTAGGAAAAATAGAAATTTTAAAATTCGGAATTTTCGAGATTCCAAATTCCGAAAAGGCCATTCCGATTATTCCTAGAGTTTTTAATTCGGAAACCTATAATGAGATTTCTTAAAGGAAATTCATAATCTTCAGAAGAATATAATAAAAACTGAACACCGAACCTTCAGAAGAAAACGACGTCTTCTGTAAGTGACACATCCCAATACCAGAATTTTCTATATACTTCCTATTCTCTCTTTCATTCCCTCTTGATTTCGGAAAACCTAGAATTCAAATATTTTSAGTGATTCTGGAAAAGTGTTTGTGTATGTTTTAAAAAAGTTAATTGGTTCGTTCTATTCAGCCGTGCTCGATAGAAACACACAAAAGAGAAACGTGTCAGATTTACGAGGATAAAAGGCGGGATCCGTTGAACATCGGGAAGCAGTAAAATGAAGGCAATAAAGAGGAGGGCTCACATTAGAATATAATTAGCATAATTAAATGAATGATTGGTCAGATGAAAAGAGAAATAGAGACGAAAAAGAAGAAGAAGAAACCCACAAGATTAGACTTTGTTTACATGTGTATTGGAATAGATAAAATGTGCTTAAAAATGATTTATTGTGTGTGCACTTTGATGGGTATTTATTGGTATTATACTATTGCAGAAATACCACAATTACCTTCACAAAAATCGAAAATAGAAACAAATGAAAAAGTAATAAAAATAGATGATGTCACTTCCTGGATGAATAATCACAACCACTAATTCACCCAAATTCATTCATGCAAAGTGTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTCTCTCTTTCATTCCCTCT</pcr_primer_p1>
		<pcr_primer_p2>TATATTCTAATGTGAGCCCTCCT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTATTCTCTCTTTCATTCCCTCTTGATTTCGGAAAACCTAGAATTCAAATATTTTCAGTGATTCTGGAAAAGTGTTTGTGTATGTTTTAAAAAAGTTAATTGGTTCGTTCTATTCAGCCGTGCTCGATAGAAACACACAAAAGAGAAACGTGTCAGATTTACGAGGATAAAAGGCGGGATCCGTTGAACATCGGGAAGCAGTAAAATGAAGGCAATAAAGAGGAGGGCTCACATTAGAATATA</canonical_amplicon>
		<polymorphic_amplicon>CTATTCTCTCTTTCATTCCCTCTTGATTTCGGAAAACCTAGAATTCAAATATTTTSAGTGATTCTGGAAAAGTGTTTGTGTATGTTTTAAAAAAGTTAATTGGTTCGTTCTATTCAGCCGTGCTCGATAGAAACACACAAAAGAGAAACGTGTCAGATTTACGAGGATAAAAGGCGGGATCCGTTGAACATCGGGAAGCAGTAAAATGAAGGCAATAAAGAGGAGGGCTCACATTAGAATATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16335</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>863551</contig_pos>
        <strand>+</strand>
        <context>TCACTCTAAT[A/T]YAATTATTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTTTTAGGATCCGAACTTCCCCTTCTTTTCACTGTCCGTTCACTCTAAT</left_flank>
        <right_flank>CAATTATTTCTTCAACCTATTTTTCACGCCTAGAACTTATTTTTCCCGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAGAGTAATTTACCGTTATTGCGTCGTTATTGGTCTCACTTTTCATTTATTTTGCAAGAGAAAACCATATCTACCGTAAACAACAAATGGGATTTGGATTTTCTAGATCACGTCCCAGTTTTTCTAGGCCATGAACTAACTTTTTGGGTTTTTTAGGCCATGCCCTAATTTTCTGAACTTTCTAGGTCGTGACCTAATTATAAGGATTTTCTAGGTCATTTCCTAATTTTTAAATTTTCTAGTTCATAATTTTAATTTGATCCAATTTATCTTGGTTCCTGTGAAATATAGCAGAAAATGATGAGCTAAAAAGTTATTTTGAACATTATAATAGACATTTTGTTAGTTGATCACTTTCTGATATTTTTTGAGGGAAATGAAATACATAGAGGCTCAAGTTGACGGTTTAGGGACATTATATTAGAGTGTTTACGGTAGGTGTTTTTAGTTTTAGGATCCGAACTTCCCCTTCTTTTCACTGTCCGTTCACTCTAATTCAATTATTTCTTCAACCTATTTTTCACGCCTAGAACTTATTTTTCCCGAATTGAATTTCTCAAAAATCTGAAAATGGATCCAATTTCAAAACACCGTTTTCTTCGTCTTCGTTTTCTTCGACTTTCTACGCCCCGTTATTCGTTTTTCTCACACCCCTATCAGATTTCCGCAAAGGGATCTTTTCTCTCTTTTCTTCAGGTATATCAGGTCAAAACATGACACATCTTGGCTCTAGCCGTCCCTGTGTCCCATTTTTTCATCCGTCCATCAGTACAGGATGTATGACAAGCTAATATTTTCATCCGACGACTCTTTCTAGACACAGAATTTCTCCATCGTGTCTGCTTCATTCCGTTTATCTATTTCTCAGTGGATTTTTGCCTCTCGTTCTCTTTATCTCTCTACCTGCCACCAGCTGCTTTTGTTGGTCCCAGTGAGGAGGAGCATGGAAAGATGGAAACGAAAAAAAGAAAAGATTCTGATGAAACGAAGAATAATG</canonical>
            <polymorphic>TTTGAGAGTAATTTACCGTTATTGCGTCGTTATTGGTCTCACTTTTCATTTATTTTGCAAGAGAAAACCATATCTACCGTAAACAACAAATGGGATTTGGATTTTCTAGATCACGTCCCAGTTTTTCTAGGCCATGAACTAACTTTTTGGGTTTTTTAGGCCATGCCCTAATTTTCTGAACTTTCTAGGTCGTGACCTAATTATAAGGATTTTCTAGGTCATTTCCTAATTTTTAAATTTTCTAGTTCATAATTTTAATTTGATCCAATTTATCTTGGTTCCTGTGAAATATAGCAGAAAATGATGAGCTAAAAAGTTATTTTGAACATTATAATAGACATTTTGTTAGTTGATCACTTTCTGATATTTTTTGAGGGAAATGAAATACATAGAGGCTCAAGTTGACGGTTTAGGGACATTATATTAGAGTGTTTACGGTAGGTGTTTTTAGTTTTAGGATCCGAACTTCCCCTTCTTTTCACTGTCCGTTCACTCTAATWCAATTATTTCTTCAACCTATTTTTCACGCCTAGAACTTATTTTTCCCGAATTGAATTTCTCAAAAATCTGAAAATGGATCCAATTTCAAAACACCGTTTTCTTCGTCTTCGTTTTCTTCGACTTTCTACGCCCCGTTATTCGTTTTTCTCACACCCCTATCAGATTTCCGCAAAGGGATCTTTTCTCTCTTTTCTTCAGGTATATCAGGTCAAAACATGACACATCTTGGCTCTAGCCGTCCCTGTGTCCCATTTTTTCATCCGTCCATCAGTACAGGATGTATGACAAGCTAATATTTTCATCCGACGACTCTTTCTAGACACAGAATTTCTCCATCGTGTCTGCTTCATTCCGTTTATCTATTTCTCAGTGGATTTTTGCCTCTCGTTCTCTTTATCTCTCTACCTGCCACCAGCTGCTTTTGTTGGTCCCAGTGAGGAGGAGCATGGAAAGATGGAAACGAAAAAAAGAAAAGATTCTGATGAAACGAAGAATAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>245 230 174 160 47 29 29 28 15 10 9 8 6 5 5</canonical_bands>
                <polymorphic_bands>245 235 174 160 47 29 29 28 15 10 9 8 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTAGTTTTAGGATCCGAACTT</pcr_primer_p1>
		<pcr_primer_p2>GAAATCTGATAGGGGTGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>TTTTAGTTTTAGGATCCGAACTTCCCCTTCTTTTCACTGTCCGTTCACTCTAATTCAATTATTTCTTCAACCTATTTTTCACGCCTAGAACTTATTTTTCCCGAATTGAATTTCTCAAAAATCTGAAAATGGATCCAATTTCAAAACACCGTTTTCTTCGTCTTCGTTTTCTTCGACTTTCTACGCCCCGTTATTCGTTTTTCTCACACCCCTATCAGATTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTAGTTTTAGGATCCGAACTTCCCCTTCTTTTCACTGTCCGTTCACTCTAATWCAATTATTTCTTCAACCTATTTTTCACGCCTAGAACTTATTTTTCCCGAATTGAATTTCTCAAAAATCTGAAAATGGATCCAATTTCAAAACACCGTTTTCTTCGTCTTCGTTTTCTTCGACTTTCTACGCCCCGTTATTCGTTTTTCTCACACCCCTATCAGATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16336</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>863552</contig_pos>
        <strand>+</strand>
        <context>CACTCTAATW[C/T]AATTATTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTTAGGATCCGAACTTCCCCTTCTTTTCACTGTCCGTTCACTCTAATT</left_flank>
        <right_flank>AATTATTTCTTCAACCTATTTTTCACGCCTAGAACTTATTTTTCCCGAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAGAGTAATTTACCGTTATTGCGTCGTTATTGGTCTCACTTTTCATTTATTTTGCAAGAGAAAACCATATCTACCGTAAACAACAAATGGGATTTGGATTTTCTAGATCACGTCCCAGTTTTTCTAGGCCATGAACTAACTTTTTGGGTTTTTTAGGCCATGCCCTAATTTTCTGAACTTTCTAGGTCGTGACCTAATTATAAGGATTTTCTAGGTCATTTCCTAATTTTTAAATTTTCTAGTTCATAATTTTAATTTGATCCAATTTATCTTGGTTCCTGTGAAATATAGCAGAAAATGATGAGCTAAAAAGTTATTTTGAACATTATAATAGACATTTTGTTAGTTGATCACTTTCTGATATTTTTTGAGGGAAATGAAATACATAGAGGCTCAAGTTGACGGTTTAGGGACATTATATTAGAGTGTTTACGGTAGGTGTTTTTAGTTTTAGGATCCGAACTTCCCCTTCTTTTCACTGTCCGTTCACTCTAATTCAATTATTTCTTCAACCTATTTTTCACGCCTAGAACTTATTTTTCCCGAATTGAATTTCTCAAAAATCTGAAAATGGATCCAATTTCAAAACACCGTTTTCTTCGTCTTCGTTTTCTTCGACTTTCTACGCCCCGTTATTCGTTTTTCTCACACCCCTATCAGATTTCCGCAAAGGGATCTTTTCTCTCTTTTCTTCAGGTATATCAGGTCAAAACATGACACATCTTGGCTCTAGCCGTCCCTGTGTCCCATTTTTTCATCCGTCCATCAGTACAGGATGTATGACAAGCTAATATTTTCATCCGACGACTCTTTCTAGACACAGAATTTCTCCATCGTGTCTGCTTCATTCCGTTTATCTATTTCTCAGTGGATTTTTGCCTCTCGTTCTCTTTATCTCTCTACCTGCCACCAGCTGCTTTTGTTGGTCCCAGTGAGGAGGAGCATGGAAAGATGGAAACGAAAAAAAGAAAAGATTCTGATGAAACGAAGAATAATGG</canonical>
            <polymorphic>TTGAGAGTAATTTACCGTTATTGCGTCGTTATTGGTCTCACTTTTCATTTATTTTGCAAGAGAAAACCATATCTACCGTAAACAACAAATGGGATTTGGATTTTCTAGATCACGTCCCAGTTTTTCTAGGCCATGAACTAACTTTTTGGGTTTTTTAGGCCATGCCCTAATTTTCTGAACTTTCTAGGTCGTGACCTAATTATAAGGATTTTCTAGGTCATTTCCTAATTTTTAAATTTTCTAGTTCATAATTTTAATTTGATCCAATTTATCTTGGTTCCTGTGAAATATAGCAGAAAATGATGAGCTAAAAAGTTATTTTGAACATTATAATAGACATTTTGTTAGTTGATCACTTTCTGATATTTTTTGAGGGAAATGAAATACATAGAGGCTCAAGTTGACGGTTTAGGGACATTATATTAGAGTGTTTACGGTAGGTGTTTTTAGTTTTAGGATCCGAACTTCCCCTTCTTTTCACTGTCCGTTCACTCTAATTYAATTATTTCTTCAACCTATTTTTCACGCCTAGAACTTATTTTTCCCGAATTGAATTTCTCAAAAATCTGAAAATGGATCCAATTTCAAAACACCGTTTTCTTCGTCTTCGTTTTCTTCGACTTTCTACGCCCCGTTATTCGTTTTTCTCACACCCCTATCAGATTTCCGCAAAGGGATCTTTTCTCTCTTTTCTTCAGGTATATCAGGTCAAAACATGACACATCTTGGCTCTAGCCGTCCCTGTGTCCCATTTTTTCATCCGTCCATCAGTACAGGATGTATGACAAGCTAATATTTTCATCCGACGACTCTTTCTAGACACAGAATTTCTCCATCGTGTCTGCTTCATTCCGTTTATCTATTTCTCAGTGGATTTTTGCCTCTCGTTCTCTTTATCTCTCTACCTGCCACCAGCTGCTTTTGTTGGTCCCAGTGAGGAGGAGCATGGAAAGATGGAAACGAAAAAAAGAAAAGATTCTGATGAAACGAAGAATAATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTAGTTTTAGGATCCGAACTT</pcr_primer_p1>
		<pcr_primer_p2>GAAATCTGATAGGGGTGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>TTTTAGTTTTAGGATCCGAACTTCCCCTTCTTTTCACTGTCCGTTCACTCTAATTCAATTATTTCTTCAACCTATTTTTCACGCCTAGAACTTATTTTTCCCGAATTGAATTTCTCAAAAATCTGAAAATGGATCCAATTTCAAAACACCGTTTTCTTCGTCTTCGTTTTCTTCGACTTTCTACGCCCCGTTATTCGTTTTTCTCACACCCCTATCAGATTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTAGTTTTAGGATCCGAACTTCCCCTTCTTTTCACTGTCCGTTCACTCTAATTYAATTATTTCTTCAACCTATTTTTCACGCCTAGAACTTATTTTTCCCGAATTGAATTTCTCAAAAATCTGAAAATGGATCCAATTTCAAAACACCGTTTTCTTCGTCTTCGTTTTCTTCGACTTTCTACGCCCCGTTATTCGTTTTTCTCACACCCCTATCAGATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16337</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>863737</contig_pos>
        <strand>+</strand>
        <context>GGATCTTTTC[C/T]CTCTTTTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATTCGTTTTTCTCACACCCCTATCAGATTTCCGCAAAGGGATCTTTTC</left_flank>
        <right_flank>CTCTTTTCTTCAGGTATATCAGGTCAAAACATGACACATCTTGGCTCTAG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTCGTGACCTAATTATAAGGATTTTCTAGGTCATTTCCTAATTTTTAAATTTTCTAGTTCATAATTTTAATTTGATCCAATTTATCTTGGTTCCTGTGAAATATAGCAGAAAATGATGAGCTAAAAAGTTATTTTGAACATTATAATAGACATTTTGTTAGTTGATCACTTTCTGATATTTTTTGAGGGAAATGAAATACATAGAGGCTCAAGTTGACGGTTTAGGGACATTATATTAGAGTGTTTACGGTAGGTGTTTTTAGTTTTAGGATCCGAACTTCCCCTTCTTTTCACTGTCCGTTCACTCTAATTCAATTATTTCTTCAACCTATTTTTCACGCCTAGAACTTATTTTTCCCGAATTGAATTTCTCAAAAATCTGAAAATGGATCCAATTTCAAAACACCGTTTTCTTCGTCTTCGTTTTCTTCGACTTTCTACGCCCCGTTATTCGTTTTTCTCACACCCCTATCAGATTTCCGCAAAGGGATCTTTTCTCTCTTTTCTTCAGGTATATCAGGTCAAAACATGACACATCTTGGCTCTAGCCGTCCCTGTGTCCCATTTTTTCATCCGTCCATCAGTACAGGATGTATGACAAGCTAATATTTTCATCCGACGACTCTTTCTAGACACAGAATTTCTCCATCGTGTCTGCTTCATTCCGTTTATCTATTTCTCAGTGGATTTTTGCCTCTCGTTCTCTTTATCTCTCTACCTGCCACCAGCTGCTTTTGTTGGTCCCAGTGAGGAGGAGCATGGAAAGATGGAAACGAAAAAAAGAAAAGATTCTGATGAAACGAAGAATAATGGAAGATTGGAGAGATGAAGAGAAAGAGAAGCAGATACATAACAAGTGTTTTGACACTACAAGCAAAGAGTATTGATTGATTGGAATTTGATTGGCAGGTCCAAATGGAAAATTACGTGATCGGAAAACCAATGAATATTCGATCAACATGATTGGAATGAAAAGAGTAGAATGAAGAAATACGATA</canonical>
            <polymorphic>AGGTCGTGACCTAATTATAAGGATTTTCTAGGTCATTTCCTAATTTTTAAATTTTCTAGTTCATAATTTTAATTTGATCCAATTTATCTTGGTTCCTGTGAAATATAGCAGAAAATGATGAGCTAAAAAGTTATTTTGAACATTATAATAGACATTTTGTTAGTTGATCACTTTCTGATATTTTTTGAGGGAAATGAAATACATAGAGGCTCAAGTTGACGGTTTAGGGACATTATATTAGAGTGTTTACGGTAGGTGTTTTTAGTTTTAGGATCCGAACTTCCCCTTCTTTTCACTGTCCGTTCACTCTAATTCAATTATTTCTTCAACCTATTTTTCACGCCTAGAACTTATTTTTCCCGAATTGAATTTCTCAAAAATCTGAAAATGGATCCAATTTCAAAACACCGTTTTCTTCGTCTTCGTTTTCTTCGACTTTCTACGCCCCGTTATTCGTTTTTCTCACACCCCTATCAGATTTCCGCAAAGGGATCTTTTCYCTCTTTTCTTCAGGTATATCAGGTCAAAACATGACACATCTTGGCTCTAGCCGTCCCTGTGTCCCATTTTTTCATCCGTCCATCAGTACAGGATGTATGACAAGCTAATATTTTCATCCGACGACTCTTTCTAGACACAGAATTTCTCCATCGTGTCTGCTTCATTCCGTTTATCTATTTCTCAGTGGATTTTTGCCTCTCGTTCTCTTTATCTCTCTACCTGCCACCAGCTGCTTTTGTTGGTCCCAGTGAGGAGGAGCATGGAAAGATGGAAACGAAAAAAAGAAAAGATTCTGATGAAACGAAGAATAATGGAAGATTGGAGAGATGAAGAGAAAGAGAAGCAGATACATAACAAGTGTTTTGACACTACAAGCAAAGAGTATTGATTGATTGGAATTTGATTGGCAGGTCCAAATGGAAAATTACGTGATCGGAAAACCAATGAATATTCGATCAACATGATTGGAATGAAAAGAGTAGAATGAAGAAATACGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTGAATTTCTCAAAAATCTG</pcr_primer_p1>
		<pcr_primer_p2>TTAGCTTGTCATACATCCTGTACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAATTGAATTTCTCAAAAATCTGAAAATGGATCCAATTTCAAAACACCGTTTTCTTCGTCTTCGTTTTCTTCGACTTTCTACGCCCCGTTATTCGTTTTTCTCACACCCCTATCAGATTTCCGCAAAGGGATCTTTTCTCTCTTTTCTTCAGGTATATCAGGTCAAAACATGACACATCTTGGCTCTAGCCGTCCCTGTGTCCCATTTTTTCATCCGTCCATCAGTACAGGATGTATGACAAGCTAA</canonical_amplicon>
		<polymorphic_amplicon>GAATTGAATTTCTCAAAAATCTGAAAATGGATCCAATTTCAAAACACCGTTTTCTTCGTCTTCGTTTTCTTCGACTTTCTACGCCCCGTTATTCGTTTTTCTCACACCCCTATCAGATTTCCGCAAAGGGATCTTTTCYCTCTTTTCTTCAGGTATATCAGGTCAAAACATGACACATCTTGGCTCTAGCCGTCCCTGTGTCCCATTTTTTCATCCGTCCATCAGTACAGGATGTATGACAAGCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16338</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>865236</contig_pos>
        <strand>+</strand>
        <context>AAAAAAATTT[A/T]AAAATGGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGATAAGATATTCAAGAGTATGAGAAAGAGAATGAAAATCAAAAAAATTT</left_flank>
        <right_flank>AAAATGGTTTCGTCATCATAGTTGACGACAAGAAATTCTCCTGCGGCTGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACAACATTAATTACCCATTTTTTTACAAATTCACATACTTCGGAAATTACCGAATATCCTCTAATTTCGAAAGATTTTCGAAAAATCACTAAGTATTTAAAAATTCAAAAAAAAAGAGACCTACAGTACCAATATTCAAAACTTTCAACTAGGACTTTTATCACTTTTCTAAAAGCCTCTAAAACTGTCTTCCGTTTCGAAAAAAAAGTCAAACCATTATTATTCCTAGGTCGAAGCCTCCTCCTTCCACCACGTCTTCCAGGTCGCATCTCCGGTAACGTCTCCGTCCTTCGAAGCCCATTTGAATCTTTTCCATCTTCTTTCATACTCTGCCATCTTACAACTGGACGACGTACTCGTTCTTCGTACAGATCATCCAGTGGCTCCGGAGAGCTCTCCGTCATTTCTAAACTGTCAGATAAAAAAGGATTCGGATAATTTGGAAGTTGATAAGATATTCAAGAGTATGAGAAAGAGAATGAAAATCAAAAAAATTTTAAAATGGTTTCGTCATCATAGTTGACGACAAGAAATTCTCCTGCGGCTGGCCGTAGGGATAGGGAGGTACACGGGTATCTGTCTCGATTCCTCTGTCTCTGAGCTCTCTCCGTATACATTCTTCTACTACTAGGAAACAAAAAAAGAGATGAAGAGATGAGACCACCGCTCTTGAGGATGAAAAAAAGAGGAAGAATAAGAAGAAGACTTTTTTACAAGTGGAGGTTCGGAGAAGAAAAGCTGAAATTGTACTGATTTACGAGATACAAGGTGGTTGGAACAGGTGGATATCGTAGAGTTTTTTTTTTCTTTCGAATCGAAGTTTTATTGAGTCATCATGGCATAACGGGTTGTATGAATGGGACCGAGTTCAAAGATGAAAGTTTTATGAATTCCAGAGTTCGTTTTTATTGATCATGTGGTCGATAATTGCTGGATGAAAATCAGGTTGAACTAAACATTCTTTAATTCAGATTAGATGAGGACCGAAGACAGGGAAT</canonical>
            <polymorphic>AAACAACATTAATTACCCATTTTTTTACAAATTCACATACTTCGGAAATTACCGAATATCCTCTAATTTCGAAAGATTTTCGAAAAATCACTAAGTATTTAAAAATTCAAAAAAAAAGAGACCTACAGTACCAATATTCAAAACTTTCAACTAGGACTTTTATCACTTTTCTAAAAGCCTCTAAAACTGTCTTCCGTTTCGAAAAAAAAGTCAAACCATTATTATTCCTAGGTCGAAGCCTCCTCCTTCCACCACGTCTTCCAGGTCGCATCTCCGGTAACGTCTCCGTCCTTCGAAGCCCATTTGAATCTTTTCCATCTTCTTTCATACTCTGCCATCTTACAACTGGACGACGTACTCGTTCTTCGTACAGATCATCCAGTGGCTCCGGAGAGCTCTCCGTCATTTCTAAACTGTCAGATAAAAAAGGATTCGGATAATTTGGAAGTTGATAAGATATTCAAGAGTATGAGAAAGAGAATGAAAATCAAAAAAATTTWAAAATGGTTTCGTCATCATAGTTGACGACAAGAAATTCTCCTGCGGCTGGCCGTAGGGATAGGGAGGTACACGGGTATCTGTCTCGATTCCTCTGTCTCTGAGCTCTCTCCGTATACATTCTTCTACTACTAGGAAACAAAAAAAGAGATGAAGAGATGAGACCACCGCTCTTGAGGATGAAAAAAAGAGGAAGAATAAGAAGAAGACTTTTTTACAAGTGGAGGTTCGGAGAAGAAAAGCTGAAATTGTACTGATTTACGAGATACAAGGTGGTTGGAACAGGTGGATATCGTAGAGTTTTTTTTTTCTTTCGAATCGAAGTTTTATTGAGTCATCATGGCATAACGGGTTGTATGAATGGGACCGAGTTCAAAGATGAAAGTTTTATGAATTCCAGAGTTCGTTTTTATTGATCATGTGGTCGATAATTGCTGGATGAAAATCAGGTTGAACTAAACATTCTTTAATTCAGATTAGATGAGGACCGAAGACAGGGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 400 100</canonical_bands>
                <polymorphic_bands>900 100</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>466 400 90 35 9</canonical_bands>
                <polymorphic_bands>866 90 35 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACTCGTTCTTCGTACAGATCAT</pcr_primer_p1>
		<pcr_primer_p2>ACAGAGGAATCGAGACAGATAC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TACTCGTTCTTCGTACAGATCATCCAGTGGCTCCGGAGAGCTCTCCGTCATTTCTAAACTGTCAGATAAAAAAGGATTCGGATAATTTGGAAGTTGATAAGATATTCAAGAGTATGAGAAAGAGAATGAAAATCAAAAAAATTTTAAAATGGTTTCGTCATCATAGTTGACGACAAGAAATTCTCCTGCGGCTGGCCGTAGGGATAGGGAGGTACACGGGTATCTGTCTCGATTCCTCTGT</canonical_amplicon>
		<polymorphic_amplicon>TACTCGTTCTTCGTACAGATCATCCAGTGGCTCCGGAGAGCTCTCCGTCATTTCTAAACTGTCAGATAAAAAAGGATTCGGATAATTTGGAAGTTGATAAGATATTCAAGAGTATGAGAAAGAGAATGAAAATCAAAAAAATTTWAAAATGGTTTCGTCATCATAGTTGACGACAAGAAATTCTCCTGCGGCTGGCCGTAGGGATAGGGAGGTACACGGGTATCTGTCTCGATTCCTCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16339</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>864891</contig_pos>
        <strand></strand>
        <context>TTTCAACTAG[G/A]ACTTTTATCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTCAAAAAAAAAGAGACCTACAGTACCAATATTCAAAACTTTCAACTAG</left_flank>
        <right_flank>ACTTTTATCACTTTTCTAAAAGCCTCTAAAACTGTCTTCCGTTTCGAAAA</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGTGATATTTAAAATAATGAAAAAACAAACCTAACAGAAATTACAGCCGCATACCGTATTCCTCTAATAGAAGCCACACAGACGATCAACTTTGAACTCAATTATCTCGATTCCTGTAAAAGATATCAAAACTTTGCCAACTGATAAAATAATGGGGACATTATGATAAACATTTTATCAGTTGACAAGTTATTGATATCTTTTACAGAAATTGAGATAATTGGGCTTAAAGTCAATGGTTTAGGATGGCTTCTATTACAGGAAGCATGGTAAATGGAATTTGAAAAAAAATTGTAATCGGAGAAAAAAAAAATCGTAAACCGCAAAGCATTTTTTCATTGGAAAACAACATTAATTACCCATTTTTTTACAAATTCACATACTTCGGAAATTACCGAATATCCTCTAATTTCGAAAGATTTTCGAAAAATCACTAAGTATTTAAAAATTCAAAAAAAAAGAGACCTACAGTACCAATATTCAAAACTTTCAACTAGGACTTTTATCACTTTTCTAAAAGCCTCTAAAACTGTCTTCCGTTTCGAAAAAAAAGTCAAACCATTATTATTCCTAGGTCGAAGCCTCCTCCTTCCACCACGTCTTCCAGGTCGCATCTCCGGTAACGTCTCCGTCCTTCGAAGCCCATTTGAATCTTTTCCATCTTCTTTCATACTCTGCCATCTTACAACTGGACGACGTACTCGTTCTTCGTACAGATCATCCAGTGGCTCCGGAGAGCTCTCCGTCATTTCTAAACTGTCAGATAAAAAAGGATTCGGATAATTTGGAAGTTGATAAGATATTCAAGAGTATGAGAAAGAGAATGAAAATCAAAAAAATTTTAAAATGGTTTCGTCATCATAGTTGACGACAAGAAATTCTCCTGCGGCTGGCCGTAGGGATAGGGAGGTACACGGGTATCTGTCTCGATTCCTCTGTCTCTGAGCTCTCTCCGTATACATTCTTCTACTACTAGGAAACAAAAAAAGAGATGAAGA</canonical>
            <polymorphic>CTTGTGATATTTAAAATAATGAAAAAACAAACCTAACAGAAATTACAGCCGCATACCGTATTCCTCTAATAGAAGCCACACAGACGATCAACTTTGAACTCAATTATCTCGATTCCTGTAAAAGATATCAAAACTTTGCCAACTGATAAAATAATGGGGACATTATGATAAACATTTTATCAGTTGACAAGTTATTGATATCTTTTACAGAAATTGAGATAATTGGGCTTAAAGTCAATGGTTTAGGATGGCTTCTATTACAGGAAGCATGGTAAATGGAATTTGAAAAAAAATTGTAATCGGAGAAAAAAAAAATCGTAAACCGCAAAGCATTTTTTCATTGGAAAACAACATTAATTACCCATTTTTTTACAAATTCACATACTTCGGAAATTACCGAATATCCTCTAATTTCGAAAGATTTTCGAAAAATCACTAAGTATTTAAAAATTCAAAAAAAAAGAGACCTACAGTACCAATATTCAAAACTTTCAACTAGRACTTTTATCACTTTTCTAAAAGCCTCTAAAACTGTCTTCCGTTTCGAAAAAAAAGTCAAACCATTATTATTCCTAGGTCGAAGCCTCCTCCTTCCACCACGTCTTCCAGGTCGCATCTCCGGTAACGTCTCCGTCCTTCGAAGCCCATTTGAATCTTTTCCATCTTCTTTCATACTCTGCCATCTTACAACTGGACGACGTACTCGTTCTTCGTACAGATCATCCAGTGGCTCCGGAGAGCTCTCCGTCATTTCTAAACTGTCAGATAAAAAAGGATTCGGATAATTTGGAAGTTGATAAGATATTCAAGAGTATGAGAAAGAGAATGAAAATCAAAAAAATTTTAAAATGGTTTCGTCATCATAGTTGACGACAAGAAATTCTCCTGCGGCTGGCCGTAGGGATAGGGAGGTACACGGGTATCTGTCTCGATTCCTCTGTCTCTGAGCTCTCTCCGTATACATTCTTCTACTACTAGGAAACAAAAAAAGAGATGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCATTGGAAAACAACATTA</pcr_primer_p1>
		<pcr_primer_p2>GGCTTCGACCTAGGAATAATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTTCATTGGAAAACAACATTAATTACCCATTTTTTTACAAATTCACATACTTCGGAAATTACCGAATATCCTCTAATTTCGAAAGATTTTCGAAAAATCACTAAGTATTTAAAAATTCAAAAAAAAAGAGACCTACAGTACCAATATTCAAAACTTTCAACTAGGACTTTTATCACTTTTCTAAAAGCCTCTAAAACTGTCTTCCGTTTCGAAAAAAAAGTCAAACCATTATTATTCCTAGGTCGAAGCC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCATTGGAAAACAACATTAATTACCCATTTTTTTACAAATTCACATACTTCGGAAATTACCGAATATCCTCTAATTTCGAAAGATTTTCGAAAAATCACTAAGTATTTAAAAATTCAAAAAAAAAGAGACCTACAGTACCAATATTCAAAACTTTCAACTAGRACTTTTATCACTTTTCTAAAAGCCTCTAAAACTGTCTTCCGTTTCGAAAAAAAAGTCAAACCATTATTATTCCTAGGTCGAAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16352</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>1039131</contig_pos>
        <strand>+</strand>
        <context>AGGTGAGAAT[A/G]AGAGGAAGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGGCCAATTCGGGTTCATGGTTCTTTGATAAACTGAATGAGGTGAGAAT</left_flank>
        <right_flank>AGAGGAAGGAGGGGAGAGGTAATAGGCATGAAGAAGCGGAAAATGGACTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATCACCTGCACAGGAGCATGCTTGAATTCGTCGGCAGTTTCAAGGCAAAACTAGACTAATTTTTTTATTTGGGAGATACTGTAAAAGGGTCACTTCAAACGAATCCGGAAACCCCAACCCTCTCATAACATGGAATTATTCTTCCGGGAACTGGTAAAAACGACCAAAAAGAGAGAAGAGAATAATGGAATGGTATGCAGAAAGAAGAAAAACAAGTGAAGAAATGCAGATGGCAGTAGTCCCTTCCCTTGCGGTCAATCCACCCCTCCGACCACAAACGGACAGATGGTTTTCGAATGGAGTGGATATTGGAAATAGTGTATGAAACGAAGGAGAATTAGACATTTTAGTGGGAGGGGGAGCACATGCTTGTGTATGTGCATAGGAAGGCATACAATCTATCACATTACTGTATTACCTCCCTTTCTGGGAAGCATCGGTCACGACCGGCCAATTCGGGTTCATGGTTCTTTGATAAACTGAATGAGGTGAGAATAAGAGGAAGGAGGGGAGAGGTAATAGGCATGAAGAAGCGGAAAATGGACTGTTTGTATGGTTCGGATGGCAAAAAAAGGCCATATTCGTGAATGTGGAAGCTGCCGTAACACTCTAATAAAATGCCATCCAAACATTAGCATTGAGCCTATATATCTCGGTTCTTGTAAAAGATATCAAAAATTGATTAACTGACAAAACATGTTTGATATTATGATAAAGATTTTGTCTGTTGGCTACTTTTGATATCTTTCACAGGAACCGAGATAAATTGGCTCAAAGTTAAAAATTTTGGGGGGGGGGGCTTCTATTGCCGGTTTCACGGTAAGTATACAATAAGTTTGAAAATGAATGCTGGAGTGTTGGTGGTTTCAAAATCATTTTTCGGTCCGGCTAGAGAGCGTTATCGACATTGTCGACAACTCTCAAGCTAACTTTAGTCTGAATCAAATTTCAAGAAATCTAAATTTCCCATTTTCAAAAAATGGCACTATCGGAATAT</canonical>
            <polymorphic>AAAATCACCTGCACAGGAGCATGCTTGAATTCGTCGGCAGTTTCAAGGCAAAACTAGACTAATTTTTTTATTTGGGAGATACTGTAAAAGGGTCACTTCAAACGAATCCGGAAACCCCAACCCTCTCATAACATGGAATTATTCTTCCGGGAACTGGTAAAAACGACCAAAAAGAGAGAAGAGAATAATGGAATGGTATGCAGAAAGAAGAAAAACAAGTGAAGAAATGCAGATGGCAGTAGTCCCTTCCCTTGCGGTCAATCCACCCCTCCGACCACAAACGGACAGATGGTTTTCGAATGGAGTGGATATTGGAAATAGTGTATGAAACGAAGGAGAATTAGACATTTTAGTGGGAGGGGGAGCACATGCTTGTGTATGTGCATAGGAAGGCATACAATCTATCACATTACTGTATTACCTCCCTTTCTGGGAAGCATCGGTCACGACCGGCCAATTCGGGTTCATGGTTCTTTGATAAACTGAATGAGGTGAGAATRAGAGGAAGGAGGGGAGAGGTAATAGGCATGAAGAAGCGGAAAATGGACTGTTTGTATGGTTCGGATGGCAAAAAAAGGCCATATTCGTGAATGTGGAAGCTGCCGTAACACTCTAATAAAATGCCATCCAAACATTAGCATTGAGCCTATATATCTCGGTTCTTGTAAAAGATATCAAAAATTGATTAACTGACAAAACATGTTTGATATTATGATAAAGATTTTGTCTGTTGGCTACTTTTGATATCTTTCACAGGAACCGAGATAAATTGGCTCAAAGTTAAAAATTTTGGGGGGGGGGGCTTCTATTGCCGGTTTCACGGTAAGTATACAATAAGTTTGAAAATGAATGCTGGAGTGTTGGTGGTTTCAAAATCATTTTTCGGTCCGGCTAGAGAGCGTTATCGACATTGTCGACAACTCTCAAGCTAACTTTAGTCTGAATCAAATTTCAAGAAATCTAAATTTCCCATTTTCAAAAAATGGCACTATCGGAATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAGTGTATGAAACGAAGGAGA</pcr_primer_p1>
		<pcr_primer_p2>AACCATACAAACAGTCCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATAGTGTATGAAACGAAGGAGAATTAGACATTTTAGTGGGAGGGGGAGCACATGCTTGTGTATGTGCATAGGAAGGCATACAATCTATCACATTACTGTATTACCTCCCTTTCTGGGAAGCATCGGTCACGACCGGCCAATTCGGGTTCATGGTTCTTTGATAAACTGAATGAGGTGAGAATAAGAGGAAGGAGGGGAGAGGTAATAGGCATGAAGAAGCGGAAAATGGACTGTTTGTATGGTT</canonical_amplicon>
		<polymorphic_amplicon>AATAGTGTATGAAACGAAGGAGAATTAGACATTTTAGTGGGAGGGGGAGCACATGCTTGTGTATGTGCATAGGAAGGCATACAATCTATCACATTACTGTATTACCTCCCTTTCTGGGAAGCATCGGTCACGACCGGCCAATTCGGGTTCATGGTTCTTTGATAAACTGAATGAGGTGAGAATRAGAGGAAGGAGGGGAGAGGTAATAGGCATGAAGAAGCGGAAAATGGACTGTTTGTATGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16353</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>1061080</contig_pos>
        <strand>+</strand>
        <context>AAGAGGGGAG[A/G]GGTGGAGTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGATAACAGAAAAGGGGGTCTTTTTAAAAAGAGCAAAAAGAGGGGAG</left_flank>
        <right_flank>GGTGGAGTGAAACACAAAAATTCTTCTATGGAAACGTTGAGAGAGAAGTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATGGGGAACATAAACTCACTTCTAAGTACAGTCGTGTTGCTCAGATCCGTGGCCACTGCTCTTGCCGCTTCCATCGAATGAAAACAAATACAATTTGGGGATTAAATGATTCAAGGTCGATCTGAAAATTGAGAAAATTAAACAACTGGAATTCTTGAATTTTTTTTTTCAATTTCAAGCACTTAAAGAAAGCATCAACTATATAAATTTCGAAACTCCTAAAATTAACAAAACGGAGAAAACTGGAAGAAGTAATATATAAGGAGGGAAAGGCATACATGAATCAGAGTTTTCTCTGCGTCTCTCAACGCGATAACGATTTCTAAGCTTCTCCTCTTTCTATTCTCTCTTCATCGTATTATAATTTTTGGGGTTGGAAAACATATAGTTAGTGCTGCGTAACTGACAAGAGGAAAACCACGCCACCACCTTCTTTAGTGGAGAATTTTGATAACAGAAAAGGGGGTCTTTTTAAAAAGAGCAAAAAGAGGGGAGGGGTGGAGTGAAACACAAAAATTCTTCTATGGAAACGTTGAGAGAGAAGTGAAGATGAAGGAAAAACAGAGAAGAATCAAAGTGAAAAGAGCAAATATAGTAGATATGTAAACAATTTGGAATAGGAGGGAAGAAGAGGGAAAAGAAGAGAAAATACGGTCGTGAATCACGCATCATAAGGCATTTCACCGAACAACAACACAGACTGCGCAGGAGAGCTCAGAAGTGGAATAAGGTGCATAGACAAGCATGTTGATATTGGCAACATTGAATACATATCTTTTTAAAAGAGCACTTTTGTGACATTTTTATGACTTCATGCTCCGCAGCTAGCAGCCTAACTCGTCCCAAGCTTCAATATCTACTTTCCAGTACACCTGAGTCAGAAAAATGTCACAAAGTTTTTAAAACTGCAATTTCTATGCATGTAAATATTGAAAAAAAGGGATACAACCTAGGCAAATCTGAGGAACTATGGTAAAAGTATTCAACACAATTTCA</canonical>
            <polymorphic>AAAAATGGGGAACATAAACTCACTTCTAAGTACAGTCGTGTTGCTCAGATCCGTGGCCACTGCTCTTGCCGCTTCCATCGAATGAAAACAAATACAATTTGGGGATTAAATGATTCAAGGTCGATCTGAAAATTGAGAAAATTAAACAACTGGAATTCTTGAATTTTTTTTTTCAATTTCAAGCACTTAAAGAAAGCATCAACTATATAAATTTCGAAACTCCTAAAATTAACAAAACGGAGAAAACTGGAAGAAGTAATATATAAGGAGGGAAAGGCATACATGAATCAGAGTTTTCTCTGCGTCTCTCAACGCGATAACGATTTCTAAGCTTCTCCTCTTTCTATTCTCTCTTCATCGTATTATAATTTTTGGGGTTGGAAAACATATAGTTAGTGCTGCGTAACTGACAAGAGGAAAACCACGCCACCACCTTCTTTAGTGGAGAATTTTGATAACAGAAAAGGGGGTCTTTTTAAAAAGAGCAAAAAGAGGGGAGRGGTGGAGTGAAACACAAAAATTCTTCTATGGAAACGTTGAGAGAGAAGTGAAGATGAAGGAAAAACAGAGAAGAATCAAAGTGAAAAGAGCAAATATAGTAGATATGTAAACAATTTGGAATAGGAGGGAAGAAGAGGGAAAAGAAGAGAAAATACGGTCGTGAATCACGCATCATAAGGCATTTCACCGAACAACAACACAGACTGCGCAGGAGAGCTCAGAAGTGGAATAAGGTGCATAGACAAGCATGTTGATATTGGCAACATTGAATACATATCTTTTTAAAAGAGCACTTTTGTGACATTTTTATGACTTCATGCTCCGCAGCTAGCAGCCTAACTCGTCCCAAGCTTCAATATCTACTTTCCAGTACACCTGAGTCAGAAAAATGTCACAAAGTTTTTAAAACTGCAATTTCTATGCATGTAAATATTGAAAAAAAGGGATACAACCTAGGCAAATCTGAGGAACTATGGTAAAAGTATTCAACACAATTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAGTGGAGAATTTTGATAACAG</pcr_primer_p1>
		<pcr_primer_p2>GTGTTGTTGTTCGGTGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>TTTAGTGGAGAATTTTGATAACAGAAAAGGGGGTCTTTTTAAAAAGAGCAAAAAGAGGGGAGGGGTGGAGTGAAACACAAAAATTCTTCTATGGAAACGTTGAGAGAGAAGTGAAGATGAAGGAAAAACAGAGAAGAATCAAAGTGAAAAGAGCAAATATAGTAGATATGTAAACAATTTGGAATAGGAGGGAAGAAGAGGGAAAAGAAGAGAAAATACGGTCGTGAATCACGCATCATAAGGCATTTCACCGAACAACAACAC</canonical_amplicon>
		<polymorphic_amplicon>TTTAGTGGAGAATTTTGATAACAGAAAAGGGGGTCTTTTTAAAAAGAGCAAAAAGAGGGGAGRGGTGGAGTGAAACACAAAAATTCTTCTATGGAAACGTTGAGAGAGAAGTGAAGATGAAGGAAAAACAGAGAAGAATCAAAGTGAAAAGAGCAAATATAGTAGATATGTAAACAATTTGGAATAGGAGGGAAGAAGAGGGAAAAGAAGAGAAAATACGGTCGTGAATCACGCATCATAAGGCATTTCACCGAACAACAACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16354</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>1061317</contig_pos>
        <strand>+</strand>
        <context>GGAATAAGGT[A/G]CATAGACAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCGAACAACAACACAGACTGCGCAGGAGAGCTCAGAAGTGGAATAAGGT</left_flank>
        <right_flank>CATAGACAAGCATGTTGATATTGGCAACATTGAATACATATCTTTTTAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGAGAAAACTGGAAGAAGTAATATATAAGGAGGGAAAGGCATACATGAATCAGAGTTTTCTCTGCGTCTCTCAACGCGATAACGATTTCTAAGCTTCTCCTCTTTCTATTCTCTCTTCATCGTATTATAATTTTTGGGGTTGGAAAACATATAGTTAGTGCTGCGTAACTGACAAGAGGAAAACCACGCCACCACCTTCTTTAGTGGAGAATTTTGATAACAGAAAAGGGGGTCTTTTTAAAAAGAGCAAAAAGAGGGGAGGGGTGGAGTGAAACACAAAAATTCTTCTATGGAAACGTTGAGAGAGAAGTGAAGATGAAGGAAAAACAGAGAAGAATCAAAGTGAAAAGAGCAAATATAGTAGATATGTAAACAATTTGGAATAGGAGGGAAGAAGAGGGAAAAGAAGAGAAAATACGGTCGTGAATCACGCATCATAAGGCATTTCACCGAACAACAACACAGACTGCGCAGGAGAGCTCAGAAGTGGAATAAGGTGCATAGACAAGCATGTTGATATTGGCAACATTGAATACATATCTTTTTAAAAGAGCACTTTTGTGACATTTTTATGACTTCATGCTCCGCAGCTAGCAGCCTAACTCGTCCCAAGCTTCAATATCTACTTTCCAGTACACCTGAGTCAGAAAAATGTCACAAAGTTTTTAAAACTGCAATTTCTATGCATGTAAATATTGAAAAAAAGGGATACAACCTAGGCAAATCTGAGGAACTATGGTAAAAGTATTCAACACAATTTCAGATAAAGGAGGTTCCGTTTTACAGGACCCATAAATATCTAGAAGATTCTTTCTGGCGACTGGAATAATTTCGAAGTTGATAAGGTTGTTTAAACTTAGGAATCTTTTATATATACTCTTCGCTTCTCCAGAATATTCATTGTGTCATGTTTTCCATCTCGTGAGTCATATCAAAAACATTGATTAGAGCAGAAATCACGAAAAGATGTGATTTAATATAAGAGGGTTTAGATAGGCA</canonical>
            <polymorphic>CGGAGAAAACTGGAAGAAGTAATATATAAGGAGGGAAAGGCATACATGAATCAGAGTTTTCTCTGCGTCTCTCAACGCGATAACGATTTCTAAGCTTCTCCTCTTTCTATTCTCTCTTCATCGTATTATAATTTTTGGGGTTGGAAAACATATAGTTAGTGCTGCGTAACTGACAAGAGGAAAACCACGCCACCACCTTCTTTAGTGGAGAATTTTGATAACAGAAAAGGGGGTCTTTTTAAAAAGAGCAAAAAGAGGGGAGGGGTGGAGTGAAACACAAAAATTCTTCTATGGAAACGTTGAGAGAGAAGTGAAGATGAAGGAAAAACAGAGAAGAATCAAAGTGAAAAGAGCAAATATAGTAGATATGTAAACAATTTGGAATAGGAGGGAAGAAGAGGGAAAAGAAGAGAAAATACGGTCGTGAATCACGCATCATAAGGCATTTCACCGAACAACAACACAGACTGCGCAGGAGAGCTCAGAAGTGGAATAAGGTRCATAGACAAGCATGTTGATATTGGCAACATTGAATACATATCTTTTTAAAAGAGCACTTTTGTGACATTTTTATGACTTCATGCTCCGCAGCTAGCAGCCTAACTCGTCCCAAGCTTCAATATCTACTTTCCAGTACACCTGAGTCAGAAAAATGTCACAAAGTTTTTAAAACTGCAATTTCTATGCATGTAAATATTGAAAAAAAGGGATACAACCTAGGCAAATCTGAGGAACTATGGTAAAAGTATTCAACACAATTTCAGATAAAGGAGGTTCCGTTTTACAGGACCCATAAATATCTAGAAGATTCTTTCTGGCGACTGGAATAATTTCGAAGTTGATAAGGTTGTTTAAACTTAGGAATCTTTTATATATACTCTTCGCTTCTCCAGAATATTCATTGTGTCATGTTTTCCATCTCGTGAGTCATATCAAAAACATTGATTAGAGCAGAAATCACGAAAAGATGTGATTTAATATAAGAGGGTTTAGATAGGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 314 175 11</canonical_bands>
                <polymorphic_bands>675 314 11</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>161 151 97 80 74 60 56 36 35 33 28 27 26 20 19 19 13 12 12 10 8 5 5 5 5 3</canonical_bands>
                <polymorphic_bands>161 151 97 80 74 66 60 36 35 33 28 27 26 20 19 19 13 12 12 8 5 5 5 5 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCACCGAACAACAACAC</pcr_primer_p1>
		<pcr_primer_p2>AAACTTTGTGACATTTTTCTGAC</pcr_primer_p2>
		<pcr_amplicon_size>222</pcr_amplicon_size>
		<canonical_amplicon>ATTTCACCGAACAACAACACAGACTGCGCAGGAGAGCTCAGAAGTGGAATAAGGTGCATAGACAAGCATGTTGATATTGGCAACATTGAATACATATCTTTTTAAAAGAGCACTTTTGTGACATTTTTATGACTTCATGCTCCGCAGCTAGCAGCCTAACTCGTCCCAAGCTTCAATATCTACTTTCCAGTACACCTGAGTCAGAAAAATGTCACAAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTCACCGAACAACAACACAGACTGCGCAGGAGAGCTCAGAAGTGGAATAAGGTRCATAGACAAGCATGTTGATATTGGCAACATTGAATACATATCTTTTTAAAAGAGCACTTTTGTGACATTTTTATGACTTCATGCTCCGCAGCTAGCAGCCTAACTCGTCCCAAGCTTCAATATCTACTTTCCAGTACACCTGAGTCAGAAAAATGTCACAAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16355</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>1063206</contig_pos>
        <strand>+</strand>
        <context>CTTCGAGAAT[A/G]GACAATGCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAGACATCTAACACGATCTCGCGAATCGACAACATCGTCTTCGAGAAT</left_flank>
        <right_flank>GACAATGCTTTCGAAACAAACTCGTACACAACGGTATGATTGTCTTCGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCAGCAGAGACGTCCAGTTGAACAGCATTATCTTGGGTTCGAGAGATCAGTTCTTCAATGTGATCTACGTTGATCTGAAAACAAAATATACAATAAATTATCCATTGTAATGTTTCGATTACCTCAGCGCATTTATCTTCGTAATAATAGATATAGGCCGAAAGAAGTTGAATGAACAATTGTTGTTGAACTAACGGCTCCAAACATTCTCTGGCAATTTTTGCAGATTTCCTTAGAATATCGACCACTTTCTTTCCGTTCCTCATCTTATCGCCATTGGTTTCTAGTGTTTCCCCATGCCAATAAAGGGAAGCAACTGTGACAAGAGACCTCACTTGGTCTGGCTTTTTAAACATTTTCGCAGCAGCAAGAACTGTTTGATTGGCCAGCGGTTGCCAGTTTTCTTCTGGTAAATGCGTTGTTTTCAGAAGAGTTCCCACTGTCAATTGAAGACATCTAACACGATCTCGCGAATCGACAACATCGTCTTCGAGAATGGACAATGCTTTCGAAACAAACTCGTACACAACGGTATGATTGTCTTCGAACAAAACACGGTCTGCTGTGATAGCTCCCTGAAAAATTTTTAGGTCTACAAATTGAATTATAACTAAAATACTCACATTAAGATACAGTTTCATAGGCAATTCAGCCAGTTCAGCTGTGGAAACAAGAGCACCGATCGTTCCCATGGCACAAACAAACATTTTTCTGATCTTCACATCCCACTTCTCATCTTCATCTTTCATATCAGCGAATTGCAATACCAAACGGTACAGTTCGAAAATGATTGGTGGAAGTGTGTAACGAAGGCGATGACGACCACCTTCTCCAAGAACTTTCCGCGCACTGTTGAGAAGCTGAAAGTGGGCATGATCTTATGATAAGAATCTAGTAAGCATCAGAGATGTCCGGAATGACTTTTTCGAGAAACTTAATCTGGAATGAATCAATTTTCTCGGAAACTGGACTGAATTAAATTCGCTGAATGAAGAAAG</canonical>
            <polymorphic>CTTCAGCAGAGACGTCCAGTTGAACAGCATTATCTTGGGTTCGAGAGATCAGTTCTTCAATGTGATCTACGTTGATCTGAAAACAAAATATACAATAAATTATCCATTGTAATGTTTCGATTACCTCAGCGCATTTATCTTCGTAATAATAGATATAGGCCGAAAGAAGTTGAATGAACAATTGTTGTTGAACTAACGGCTCCAAACATTCTCTGGCAATTTTTGCAGATTTCCTTAGAATATCGACCACTTTCTTTCCGTTCCTCATCTTATCGCCATTGGTTTCTAGTGTTTCCCCATGCCAATAAAGGGAAGCAACTGTGACAAGAGACCTCACTTGGTCTGGCTTTTTAAACATTTTCGCAGCAGCAAGAACTGTTTGATTGGCCAGCGGTTGCCAGTTTTCTTCTGGTAAATGCGTTGTTTTCAGAAGAGTTCCCACTGTCAATTGAAGACATCTAACACGATCTCGCGAATCGACAACATCGTCTTCGAGAATRGACAATGCTTTCGAAACAAACTCGTACACAACGGTATGATTGTCTTCGAACAAAACACGGTCTGCTGTGATAGCTCCCTGAAAAATTTTTAGGTCTACAAATTGAATTATAACTAAAATACTCACATTAAGATACAGTTTCATAGGCAATTCAGCCAGTTCAGCTGTGGAAACAAGAGCACCGATCGTTCCCATGGCACAAACAAACATTTTTCTGATCTTCACATCCCACTTCTCATCTTCATCTTTCATATCAGCGAATTGCAATACCAAACGGTACAGTTCGAAAATGATTGGTGGAAGTGTGTAACGAAGGCGATGACGACCACCTTCTCCAAGAACTTTCCGCGCACTGTTGAGAAGCTGAAAGTGGGCATGATCTTATGATAAGAATCTAGTAAGCATCAGAGATGTCCGGAATGACTTTTTCGAGAAACTTAATCTGGAATGAATCAATTTTCTCGGAAACTGGACTGAATTAAATTCGCTGAATGAAGAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTGGTAAATGCGTTGTT</pcr_primer_p1>
		<pcr_primer_p2>CTGAATTGCCTATGAAACTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTCTGGTAAATGCGTTGTTTTCAGAAGAGTTCCCACTGTCAATTGAAGACATCTAACACGATCTCGCGAATCGACAACATCGTCTTCGAGAATGGACAATGCTTTCGAAACAAACTCGTACACAACGGTATGATTGTCTTCGAACAAAACACGGTCTGCTGTGATAGCTCCCTGAAAAATTTTTAGGTCTACAAATTGAATTATAACTAAAATACTCACATTAAGATACAGTTTCATAGGCAATTCAG</canonical_amplicon>
		<polymorphic_amplicon>CTTCTGGTAAATGCGTTGTTTTCAGAAGAGTTCCCACTGTCAATTGAAGACATCTAACACGATCTCGCGAATCGACAACATCGTCTTCGAGAATRGACAATGCTTTCGAAACAAACTCGTACACAACGGTATGATTGTCTTCGAACAAAACACGGTCTGCTGTGATAGCTCCCTGAAAAATTTTTAGGTCTACAAATTGAATTATAACTAAAATACTCACATTAAGATACAGTTTCATAGGCAATTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16356</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>1063059</contig_pos>
        <strand>+</strand>
        <context>CTGGCTTTTT[A/G]AACATTTTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATAAAGGGAAGCAACTGTGACAAGAGACCTCACTTGGTCTGGCTTTTT</left_flank>
        <right_flank>AACATTTTCGCAGCAGCAAGAACTGTTTGATTGGCCAGCGGTTGCCAGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGTTTTTAGAGCCCTTCATTTTCAGACGGAGGTTGTGGAAGATCGGGCTCTGTCCGTGGAGAGGCCACTTGAGAAGCGGCCACATCAATCTTAGCAAGTTGCAACCGGTGAATCGTTTCTCCAAGTTGCTTCTCTAGATTATCAGCTTCAGCAGAGACGTCCAGTTGAACAGCATTATCTTGGGTTCGAGAGATCAGTTCTTCAATGTGATCTACGTTGATCTGAAAACAAAATATACAATAAATTATCCATTGTAATGTTTCGATTACCTCAGCGCATTTATCTTCGTAATAATAGATATAGGCCGAAAGAAGTTGAATGAACAATTGTTGTTGAACTAACGGCTCCAAACATTCTCTGGCAATTTTTGCAGATTTCCTTAGAATATCGACCACTTTCTTTCCGTTCCTCATCTTATCGCCATTGGTTTCTAGTGTTTCCCCATGCCAATAAAGGGAAGCAACTGTGACAAGAGACCTCACTTGGTCTGGCTTTTTAAACATTTTCGCAGCAGCAAGAACTGTTTGATTGGCCAGCGGTTGCCAGTTTTCTTCTGGTAAATGCGTTGTTTTCAGAAGAGTTCCCACTGTCAATTGAAGACATCTAACACGATCTCGCGAATCGACAACATCGTCTTCGAGAATGGACAATGCTTTCGAAACAAACTCGTACACAACGGTATGATTGTCTTCGAACAAAACACGGTCTGCTGTGATAGCTCCCTGAAAAATTTTTAGGTCTACAAATTGAATTATAACTAAAATACTCACATTAAGATACAGTTTCATAGGCAATTCAGCCAGTTCAGCTGTGGAAACAAGAGCACCGATCGTTCCCATGGCACAAACAAACATTTTTCTGATCTTCACATCCCACTTCTCATCTTCATCTTTCATATCAGCGAATTGCAATACCAAACGGTACAGTTCGAAAATGATTGGTGGAAGTGTGTAACGAAGGCGATGACGACCACCTTCTCCAAGAACTTTCCGCGCACT</canonical>
            <polymorphic>TATGTTTTTAGAGCCCTTCATTTTCAGACGGAGGTTGTGGAAGATCGGGCTCTGTCCGTGGAGAGGCCACTTGAGAAGCGGCCACATCAATCTTAGCAAGTTGCAACCGGTGAATCGTTTCTCCAAGTTGCTTCTCTAGATTATCAGCTTCAGCAGAGACGTCCAGTTGAACAGCATTATCTTGGGTTCGAGAGATCAGTTCTTCAATGTGATCTACGTTGATCTGAAAACAAAATATACAATAAATTATCCATTGTAATGTTTCGATTACCTCAGCGCATTTATCTTCGTAATAATAGATATAGGCCGAAAGAAGTTGAATGAACAATTGTTGTTGAACTAACGGCTCCAAACATTCTCTGGCAATTTTTGCAGATTTCCTTAGAATATCGACCACTTTCTTTCCGTTCCTCATCTTATCGCCATTGGTTTCTAGTGTTTCCCCATGCCAATAAAGGGAAGCAACTGTGACAAGAGACCTCACTTGGTCTGGCTTTTTRAACATTTTCGCAGCAGCAAGAACTGTTTGATTGGCCAGCGGTTGCCAGTTTTCTTCTGGTAAATGCGTTGTTTTCAGAAGAGTTCCCACTGTCAATTGAAGACATCTAACACGATCTCGCGAATCGACAACATCGTCTTCGAGAATGGACAATGCTTTCGAAACAAACTCGTACACAACGGTATGATTGTCTTCGAACAAAACACGGTCTGCTGTGATAGCTCCCTGAAAAATTTTTAGGTCTACAAATTGAATTATAACTAAAATACTCACATTAAGATACAGTTTCATAGGCAATTCAGCCAGTTCAGCTGTGGAAACAAGAGCACCGATCGTTCCCATGGCACAAACAAACATTTTTCTGATCTTCACATCCCACTTCTCATCTTCATCTTTCATATCAGCGAATTGCAATACCAAACGGTACAGTTCGAAAATGATTGGTGGAAGTGTGTAACGAAGGCGATGACGACCACCTTCTCCAAGAACTTTCCGCGCACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>498 276 226</canonical_bands>
                <polymorphic_bands>774 226</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGCAGATTTCCTTAGAATA</pcr_primer_p1>
		<pcr_primer_p2>AGATCGTGTTAGATGTCTTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGCAGATTTCCTTAGAATATCGACCACTTTCTTTCCGTTCCTCATCTTATCGCCATTGGTTTCTAGTGTTTCCCCATGCCAATAAAGGGAAGCAACTGTGACAAGAGACCTCACTTGGTCTGGCTTTTTAAACATTTTCGCAGCAGCAAGAACTGTTTGATTGGCCAGCGGTTGCCAGTTTTCTTCTGGTAAATGCGTTGTTTTCAGAAGAGTTCCCACTGTCAATTGAAGACATCTAACACGATCT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGCAGATTTCCTTAGAATATCGACCACTTTCTTTCCGTTCCTCATCTTATCGCCATTGGTTTCTAGTGTTTCCCCATGCCAATAAAGGGAAGCAACTGTGACAAGAGACCTCACTTGGTCTGGCTTTTTRAACATTTTCGCAGCAGCAAGAACTGTTTGATTGGCCAGCGGTTGCCAGTTTTCTTCTGGTAAATGCGTTGTTTTCAGAAGAGTTCCCACTGTCAATTGAAGACATCTAACACGATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16357</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>1086780</contig_pos>
        <strand>+</strand>
        <context>AAAACTGGCA[A/G]AAACAGATTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGTCATTTGATACTCACACGAAGAGATAGAAATAGTGTGAAAACTGGCA</left_flank>
        <right_flank>AAACAGATTAACGGATCACCGATATCGGGTGAAAAAGACAATGAAAAGAA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGAATGGGAAAAGAGCCAAACGGCTGAATGACGCACGTGCAAGAATGTAGTTCTATGATGATGTTAGTATTGAAAGGAAATCCAATATGTTCTACATAGGACAAAGAACTACAACTAAAATATTGGTCCATCATGTTGAAAAAAGATTCTGAATGTCATGTCATTTCATGTTCTGACAAGTTTCTCGTGCCACCTGAGCAGGAGGGCGGTGATAAAATGAGTGATAAGAGACGCAGCAGCTTCTCTCAAGAAATGAGTCAATTTTTCTTTTTTTTTTCAGAGGGGAAGGGGCGGAAAAGAAAGCACTTCATCATTTTTGACTCACAATGGAGCATTGAACGGTGTGCGCTTTTGTGAAAAATGCCGCGTCATGTTCAGAATCTTTGAAATTCAGAAAGTTCAAAATGATTCACTGGAAATGGTCGAAAATCTGTTTCACTATATATTGTGTCATTTGATACTCACACGAAGAGATAGAAATAGTGTGAAAACTGGCAAAAACAGATTAACGGATCACCGATATCGGGTGAAAAAGACAATGAAAAGAACAGAGGAAGTGGGTGTTGGAACTTTTGAAAAAGTAGATGAGTTTGGGAAACGAGTAATATACTCGGCTGAATTTCTGGTCAACAGTTCAAAAGACTTTGGCTTTTCAACGGATATTGGTCAAATTCTGGTTGGAAATCGCCCAAAAACGGCTGTATAGCGAGCCATGGTCAGATATTGGAAGTTTGAACTAGATTGGAATTTTCATATTGAATAGAAATCTAAAAAAAAATAATATTCTTCTTTGAAAAGTTTGATGTTTGTCTTCCTGTTGGAGCTTGAGCGTTTGGCTTTTCAATTACCGTTAAACGTGTAATAGAAGAACCTACTAACTTTTAACTTCGACCCCATTTATCTCGGTTCCTCTCAAAGATATCAAAAAGTTGTCAACTAAAAATTGTTCATCATAATGTTATAAGTATTTTGTCATTTAATTACTTTTTGATATCTTC</canonical>
            <polymorphic>TTGGAATGGGAAAAGAGCCAAACGGCTGAATGACGCACGTGCAAGAATGTAGTTCTATGATGATGTTAGTATTGAAAGGAAATCCAATATGTTCTACATAGGACAAAGAACTACAACTAAAATATTGGTCCATCATGTTGAAAAAAGATTCTGAATGTCATGTCATTTCATGTTCTGACAAGTTTCTCGTGCCACCTGAGCAGGAGGGCGGTGATAAAATGAGTGATAAGAGACGCAGCAGCTTCTCTCAAGAAATGAGTCAATTTTTCTTTTTTTTTTCAGAGGGGAAGGGGCGGAAAAGAAAGCACTTCATCATTTTTGACTCACAATGGAGCATTGAACGGTGTGCGCTTTTGTGAAAAATGCCGCGTCATGTTCAGAATCTTTGAAATTCAGAAAGTTCAAAATGATTCACTGGAAATGGTCGAAAATCTGTTTCACTATATATTGTGTCATTTGATACTCACACGAAGAGATAGAAATAGTGTGAAAACTGGCARAAACAGATTAACGGATCACCGATATCGGGTGAAAAAGACAATGAAAAGAACAGAGGAAGTGGGTGTTGGAACTTTTGAAAAAGTAGATGAGTTTGGGAAACGAGTAATATACTCGGCTGAATTTCTGGTCAACAGTTCAAAAGACTTTGGCTTTTCAACGGATATTGGTCAAATTCTGGTTGGAAATCGCCCAAAAACGGCTGTATAGCGAGCCATGGTCAGATATTGGAAGTTTGAACTAGATTGGAATTTTCATATTGAATAGAAATCTAAAAAAAAATAATATTCTTCTTTGAAAAGTTTGATGTTTGTCTTCCTGTTGGAGCTTGAGCGTTTGGCTTTTCAATTACCGTTAAACGTGTAATAGAAGAACCTACTAACTTTTAACTTCGACCCCATTTATCTCGGTTCCTCTCAAAGATATCAAAAAGTTGTCAACTAAAAATTGTTCATCATAATGTTATAAGTATTTTGTCATTTAATTACTTTTTGATATCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTTCATCATTTTTGACTCAC</pcr_primer_p1>
		<pcr_primer_p2>TCTGTTCTTTTCATTGTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CACTTCATCATTTTTGACTCACAATGGAGCATTGAACGGTGTGCGCTTTTGTGAAAAATGCCGCGTCATGTTCAGAATCTTTGAAATTCAGAAAGTTCAAAATGATTCACTGGAAATGGTCGAAAATCTGTTTCACTATATATTGTGTCATTTGATACTCACACGAAGAGATAGAAATAGTGTGAAAACTGGCAAAAACAGATTAACGGATCACCGATATCGGGTGAAAAAGACAATGAAAAGAACAGA</canonical_amplicon>
		<polymorphic_amplicon>CACTTCATCATTTTTGACTCACAATGGAGCATTGAACGGTGTGCGCTTTTGTGAAAAATGCCGCGTCATGTTCAGAATCTTTGAAATTCAGAAAGTTCAAAATGATTCACTGGAAATGGTCGAAAATCTGTTTCACTATATATTGTGTCATTTGATACTCACACGAAGAGATAGAAATAGTGTGAAAACTGGCARAAACAGATTAACGGATCACCGATATCGGGTGAAAAAGACAATGAAAAGAACAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16358</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>1117447</contig_pos>
        <strand></strand>
        <context>TTATTTTTTA[A/T]TTGCGTGTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAAAAAATCAAACATCGCTCTCTGATTGTAATTGTAAGATTATTTTTTA</left_flank>
        <right_flank>TTGCGTGTGTGAAAAGTTTCATTCGAAATGCTACTAATCAATCAAATGGG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATGTAAAAAAAATGACATATACTGAAAATTTCAAAAAATGATGAAACATGTTCAAAGCAAGAAAATTTGGTGGAAACAACCCCAAAACGGGGAAAAAAGGGTAAATCTTAACTTAAGCATAATTTTTCCATTTGGCCCCCCCCCCTCTTTTCTCATGGGCCCCCCTTGTCATAAAGAGCCCAATTTTTTGGTTCTTTAATTTTCATGTTGAAATTTCGACTGGGTTACTGTAGACTTTAGGCTTTTTTCCAATTTTGCTCCAAAAAATGACGAAATCTGGGGACATGGATAAAAGGAACCATAACAAAACAAACGAAAGAAAAAATAATAAAGAAGCATATTCTGAAAAATTATAGGCTTCTGGGTTTGGTTTCTCAATAAACATCTAGACCTGAAAAACACTTCTCCTCGGATTTCCTTTTTTCCAATTTCCTGAATCCTTCTGATGAAAAAATCAAACATCGCTCTCTGATTGTAATTGTAAGATTATTTTTTAATTGCGTGTGTGAAAAGTTTCATTCGAAATGCTACTAATCAATCAAATGGGAGAGCAACTGGCCCATTACAATTTCTCAATGAGAGCAGATGAGGGGCAGATTTTAATTGGAAAAGAACATTTTATTTAAAAATCTATTAGGTGCCAGAAAATTACGAGTTTTGGTTTATCCTATAACAACGAAATTTATTATTCAGCCATTTGAGTGCATAGTAAAGTTTGAAAAACCTTTCGGCTAGAATAACTCCTATTTACTAACTCTGCAGAATTTTTACTTGTACAGGAGCCATTTCCACAGCTCTAAGAAAAACTGAAACATGCAGGCGCGGGTGATCAGAAAGAGTCGAATTCAGAAATTCGAACATTCATATACAGTAACAGTCAATAAGACAAACGTATTTTCAGTTGATTTTCGGTTATTTCTACCATTTTCAGGAGTTTGGAGCTCTGCTATCAAGTTTCCGATCACTTTGAAATTTTTGAATGGGGTAAAATAGAAAC</canonical>
            <polymorphic>AAAATGTAAAAAAAATGACATATACTGAAAATTTCAAAAAATGATGAAACATGTTCAAAGCAAGAAAATTTGGTGGAAACAACCCCAAAACGGGGAAAAAAGGGTAAATCTTAACTTAAGCATAATTTTTCCATTTGGCCCCCCCCCCTCTTTTCTCATGGGCCCCCCTTGTCATAAAGAGCCCAATTTTTTGGTTCTTTAATTTTCATGTTGAAATTTCGACTGGGTTACTGTAGACTTTAGGCTTTTTTCCAATTTTGCTCCAAAAAATGACGAAATCTGGGGACATGGATAAAAGGAACCATAACAAAACAAACGAAAGAAAAAATAATAAAGAAGCATATTCTGAAAAATTATAGGCTTCTGGGTTTGGTTTCTCAATAAACATCTAGACCTGAAAAACACTTCTCCTCGGATTTCCTTTTTTCCAATTTCCTGAATCCTTCTGATGAAAAAATCAAACATCGCTCTCTGATTGTAATTGTAAGATTATTTTTTAWTTGCGTGTGTGAAAAGTTTCATTCGAAATGCTACTAATCAATCAAATGGGAGAGCAACTGGCCCATTACAATTTCTCAATGAGAGCAGATGAGGGGCAGATTTTAATTGGAAAAGAACATTTTATTTAAAAATCTATTAGGTGCCAGAAAATTACGAGTTTTGGTTTATCCTATAACAACGAAATTTATTATTCAGCCATTTGAGTGCATAGTAAAGTTTGAAAAACCTTTCGGCTAGAATAACTCCTATTTACTAACTCTGCAGAATTTTTACTTGTACAGGAGCCATTTCCACAGCTCTAAGAAAAACTGAAACATGCAGGCGCGGGTGATCAGAAAGAGTCGAATTCAGAAATTCGAACATTCATATACAGTAACAGTCAATAAGACAAACGTATTTTCAGTTGATTTTCGGTTATTTCTACCATTTTCAGGAGTTTGGAGCTCTGCTATCAAGTTTCCGATCACTTTGAAATTTTTGAATGGGGTAAAATAGAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>374 298 111 106 83 23 5</canonical_bands>
                <polymorphic_bands>404 374 111 83 23 5</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>120 98 83 80 78 71 61 57 50 45 39 37 35 33 29 27 19 16 14 8</canonical_bands>
                <polymorphic_bands>120 98 90 83 80 78 61 57 50 45 39 37 35 33 29 27 16 14 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAACAAAACAAACGAAAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTCTCCCATTTGATTGATTAGTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATAACAAAACAAACGAAAGAAAAAATAATAAAGAAGCATATTCTGAAAAATTATAGGCTTCTGGGTTTGGTTTCTCAATAAACATCTAGACCTGAAAAACACTTCTCCTCGGATTTCCTTTTTTCCAATTTCCTGAATCCTTCTGATGAAAAAATCAAACATCGCTCTCTGATTGTAATTGTAAGATTATTTTTTAATTGCGTGTGTGAAAAGTTTCATTCGAAATGCTACTAATCAATCAAATGGGAGAG</canonical_amplicon>
		<polymorphic_amplicon>ATAACAAAACAAACGAAAGAAAAAATAATAAAGAAGCATATTCTGAAAAATTATAGGCTTCTGGGTTTGGTTTCTCAATAAACATCTAGACCTGAAAAACACTTCTCCTCGGATTTCCTTTTTTCCAATTTCCTGAATCCTTCTGATGAAAAAATCAAACATCGCTCTCTGATTGTAATTGTAAGATTATTTTTTAWTTGCGTGTGTGAAAAGTTTCATTCGAAATGCTACTAATCAATCAAATGGGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16359</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>1176516</contig_pos>
        <strand>+</strand>
        <context>CATAAAACTA[A/C]GTAGTCAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACATTCTTCAAATGTTTTCGCTGAAATTTTTAATGAGCCACATAAAACTA</left_flank>
        <right_flank>GTAGTCAGTTTGATATCTCCCTTTCTAGAATATACGTCGATTGGTCAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACGTCCGATCCGAACGAAAAGCCGAAGAATGTCAGAAGCACGAGCATCATCTCATCTGTGGACCAGAGAGACATTGTGATCGGACGTGTGAGAACTTGTTCAGGTAAGATAGTAAACATTATGAAACACTGTGCGGAAGGAATGTAGATGGAATTTGAGTCACTTGATAAAAACTGTGTTGATTAAACGTAATTGCCTCGTTGTTGATTAGTAGAACCAAGGACTAGAAATTCCAATCAAATTTTAACTATTTTCAGCCCTCCAAACTGCGAAAACCATCTGCACCATGCCAAATGTTACTTCCCTCGATGCGTCTGCAACCATGGATACGTTCGAGACGACAACGGTATCTGCATCCGACCCTCGCACTGTCCCAATACGTACTATGAGCCGGCATCGATGATCATGGAAGACGTGAGTTTTTGGGTTAAACAAAAAATCAGTGATCACATTCTTCAAATGTTTTCGCTGAAATTTTTAATGAGCCACATAAAACTAAGTAGTCAGTTTGATATCTCCCTTTCTAGAATATACGTCGATTGGTCAAAACACAGTGCTCTCTCTGTCTCGTCAAAAAACCTTGTCGCGTCCCCATTAAAAATTACCATTAAATTATTTTACGACCCAACACAAATATCGTTCGATCAACACAATCTATTGCACTTTTTTGGGTTCTCTGTTTAACGCTCTGATTTGAAAACTGATGATGTTTGCGCGTAGGAAAGAAATTTGATTTCGAAACGAAACACCTGATGATCCGACTCACCATTGACGTAGTTTTGACCTAGATTTTGCAAATGTGGTTCTGAAAAAGGGGCTGAAACTGCCTTAAACTGACATGTGATGCTTTTGCGCTCAAATGTGATATTTAACGATTATCAGCAAGCTTTTTTTTCTTAAGCGTCTTAAGGTGTCAAAAAACCTTTGAACTGGAGACGGGGAAAAGTTCCGGAATTGTAATTTATTTTGGGAGGAAATTTTGCAGAGGGTTTTGGCTAG</canonical>
            <polymorphic>CACGTCCGATCCGAACGAAAAGCCGAAGAATGTCAGAAGCACGAGCATCATCTCATCTGTGGACCAGAGAGACATTGTGATCGGACGTGTGAGAACTTGTTCAGGTAAGATAGTAAACATTATGAAACACTGTGCGGAAGGAATGTAGATGGAATTTGAGTCACTTGATAAAAACTGTGTTGATTAAACGTAATTGCCTCGTTGTTGATTAGTAGAACCAAGGACTAGAAATTCCAATCAAATTTTAACTATTTTCAGCCCTCCAAACTGCGAAAACCATCTGCACCATGCCAAATGTTACTTCCCTCGATGCGTCTGCAACCATGGATACGTTCGAGACGACAACGGTATCTGCATCCGACCCTCGCACTGTCCCAATACGTACTATGAGCCGGCATCGATGATCATGGAAGACGTGAGTTTTTGGGTTAAACAAAAAATCAGTGATCACATTCTTCAAATGTTTTCGCTGAAATTTTTAATGAGCCACATAAAACTAMGTAGTCAGTTTGATATCTCCCTTTCTAGAATATACGTCGATTGGTCAAAACACAGTGCTCTCTCTGTCTCGTCAAAAAACCTTGTCGCGTCCCCATTAAAAATTACCATTAAATTATTTTACGACCCAACACAAATATCGTTCGATCAACACAATCTATTGCACTTTTTTGGGTTCTCTGTTTAACGCTCTGATTTGAAAACTGATGATGTTTGCGCGTAGGAAAGAAATTTGATTTCGAAACGAAACACCTGATGATCCGACTCACCATTGACGTAGTTTTGACCTAGATTTTGCAAATGTGGTTCTGAAAAAGGGGCTGAAACTGCCTTAAACTGACATGTGATGCTTTTGCGCTCAAATGTGATATTTAACGATTATCAGCAAGCTTTTTTTTCTTAAGCGTCTTAAGGTGTCAAAAAACCTTTGAACTGGAGACGGGGAAAAGTTCCGGAATTGTAATTTATTTTGGGAGGAAATTTTGCAGAGGGTTTTGGCTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAGTGATCACATTCTTCAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATCAGAGCGTTAAACAGAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>ATCAGTGATCACATTCTTCAAATGTTTTCGCTGAAATTTTTAATGAGCCACATAAAACTAAGTAGTCAGTTTGATATCTCCCTTTCTAGAATATACGTCGATTGGTCAAAACACAGTGCTCTCTCTGTCTCGTCAAAAAACCTTGTCGCGTCCCCATTAAAAATTACCATTAAATTATTTTACGACCCAACACAAATATCGTTCGATCAACACAATCTATTGCACTTTTTTGGGTTCTCTGTTTAACGCTCTGAT</canonical_amplicon>
		<polymorphic_amplicon>ATCAGTGATCACATTCTTCAAATGTTTTCGCTGAAATTTTTAATGAGCCACATAAAACTAMGTAGTCAGTTTGATATCTCCCTTTCTAGAATATACGTCGATTGGTCAAAACACAGTGCTCTCTCTGTCTCGTCAAAAAACCTTGTCGCGTCCCCATTAAAAATTACCATTAAATTATTTTACGACCCAACACAAATATCGTTCGATCAACACAATCTATTGCACTTTTTTGGGTTCTCTGTTTAACGCTCTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16360</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>1202973</contig_pos>
        <strand>+</strand>
        <context>GTGCTTGTAT[A/T]ATCATTTCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCTCACAAGGAAAATATATAATTAAAGGGTTTTGATCATGTGCTTGTAT</left_flank>
        <right_flank>ATCATTTCAGGACATAAAAGATATTGTCAATGGAAGGATTGCATGTGTGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTTCCTCGTTTCTTCCTTATTGTCACCCTCTTCAAAAGTGGGCGGAGCACCTTCCGGTTGGTGGTCCCTTCCAAGAGAGGAGGAGCTTGCCTTCTAGGAACCTTTACCTTTCACTCGGTTATTATAACTATTCTATTTGTCAGAATGCCTTCTCCGCCATCTTCATCAGCTTGCTCTGTTCTACCTCCATCTAGTCTTGAACAGATTCTCAGAATCCGTGCGGAACGAAATCAAAGGACTCCGAAATGTGCGAGATGCCGGAATCATGGAGTTGTTTCCGCTTTGAAAGGTTTGTCTAGTTTGAGTAATTTCATTTTTCGACGGGTGCAACTGATATTTACTGCTGTAAATCTTATGATGTTGAAATTTGACCAACAGCAAAACAATTATAAATTTCTAAACCGTAATTACGCTCTGAAATTTCGTCATAGATGTTTTATACTTCAGGTCTCACAAGGAAAATATATAATTAAAGGGTTTTGATCATGTGCTTGTATAATCATTTCAGGACATAAAAGATATTGTCAATGGAAGGATTGCATGTGTGCGAAATGTACACTGATTGCTGAAAGACAACGTGTGATGGCTGCCCAGGTGGCGCTTCGTCGTCAGCAATCTCAAGAGGAAAAGGAGACGAGAGAGCTGGAAATCCTGTTTGGTGCTTCTGGAAATGGTAAGATTGATTGAGAACATTCAAGAGTAGCTTTTACTTATTTGGCTCCCATAAGGGTTACTGTAGGTTTACCACTCAAGCTGTTGGGGATTATATCGTTCGAAACGGAAAGCGAACACACCTTAAAGGGAGACATGAGATTTTTAGTTTTCTTGGAGTCACAGTATGAATTCTGACGTAACGGTTTACAGTGTTTAGTGTTCACATAGCGCGTTGCTATCGTGCCGCCATCGTTCAGCCTCCCCAGCTTGCGCCACCGTAACCCAGCTGGTAGCGGCGCGGCACCACCAGCGTTAAGTCCACAAGTTCAACTCCTCGAGGAGCA</canonical>
            <polymorphic>CCTTTCCTCGTTTCTTCCTTATTGTCACCCTCTTCAAAAGTGGGCGGAGCACCTTCCGGTTGGTGGTCCCTTCCAAGAGAGGAGGAGCTTGCCTTCTAGGAACCTTTACCTTTCACTCGGTTATTATAACTATTCTATTTGTCAGAATGCCTTCTCCGCCATCTTCATCAGCTTGCTCTGTTCTACCTCCATCTAGTCTTGAACAGATTCTCAGAATCCGTGCGGAACGAAATCAAAGGACTCCGAAATGTGCGAGATGCCGGAATCATGGAGTTGTTTCCGCTTTGAAAGGTTTGTCTAGTTTGAGTAATTTCATTTTTCGACGGGTGCAACTGATATTTACTGCTGTAAATCTTATGATGTTGAAATTTGACCAACAGCAAAACAATTATAAATTTCTAAACCGTAATTACGCTCTGAAATTTCGTCATAGATGTTTTATACTTCAGGTCTCACAAGGAAAATATATAATTAAAGGGTTTTGATCATGTGCTTGTATWATCATTTCAGGACATAAAAGATATTGTCAATGGAAGGATTGCATGTGTGCGAAATGTACACTGATTGCTGAAAGACAACGTGTGATGGCTGCCCAGGTGGCGCTTCGTCGTCAGCAATCTCAAGAGGAAAAGGAGACGAGAGAGCTGGAAATCCTGTTTGGTGCTTCTGGAAATGGTAAGATTGATTGAGAACATTCAAGAGTAGCTTTTACTTATTTGGCTCCCATAAGGGTTACTGTAGGTTTACCACTCAAGCTGTTGGGGATTATATCGTTCGAAACGGAAAGCGAACACACCTTAAAGGGAGACATGAGATTTTTAGTTTTCTTGGAGTCACAGTATGAATTCTGACGTAACGGTTTACAGTGTTTAGTGTTCACATAGCGCGTTGCTATCGTGCCGCCATCGTTCAGCCTCCCCAGCTTGCGCCACCGTAACCCAGCTGGTAGCGGCGCGGCACCACCAGCGTTAAGTCCACAAGTTCAACTCCTCGAGGAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGGTCTCACAAGGAAAATA</pcr_primer_p1>
		<pcr_primer_p2>AATGTTCTCAATCAATCTTACCA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCAGGTCTCACAAGGAAAATATATAATTAAAGGGTTTTGATCATGTGCTTGTATAATCATTTCAGGACATAAAAGATATTGTCAATGGAAGGATTGCATGTGTGCGAAATGTACACTGATTGCTGAAAGACAACGTGTGATGGCTGCCCAGGTGGCGCTTCGTCGTCAGCAATCTCAAGAGGAAAAGGAGACGAGAGAGCTGGAAATCCTGTTTGGTGCTTCTGGAAATGGTAAGATTGATTGAGAACATT</canonical_amplicon>
		<polymorphic_amplicon>TCAGGTCTCACAAGGAAAATATATAATTAAAGGGTTTTGATCATGTGCTTGTATWATCATTTCAGGACATAAAAGATATTGTCAATGGAAGGATTGCATGTGTGCGAAATGTACACTGATTGCTGAAAGACAACGTGTGATGGCTGCCCAGGTGGCGCTTCGTCGTCAGCAATCTCAAGAGGAAAAGGAGACGAGAGAGCTGGAAATCCTGTTTGGTGCTTCTGGAAATGGTAAGATTGATTGAGAACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16361</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>1205989</contig_pos>
        <strand>+</strand>
        <context>TGTTCTCAAG[C/T]TTGATGAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTGAACCTCAAATCTTGTCCCTTACCTTGTTTCTGCTCGTGTTCTCAAG</left_flank>
        <right_flank>TTGATGAACTTTCCATTTGGATCGCACTCAGAAATGGTCACATTTCCCTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGGTAGGAACCGAGAAGGACTATATCAAGAGAAATTATGGACAGAAACTAGAGAACTTGAGTGAAATGGGGAGGGCAGGGGTGGGATAAGAAGAGGGAAGGAGTTTATTGTCCGGATTGGATGGTCTTCTGGGTGTGGGTGGCACGTTCCTCTCCATCCTTGTTCACCAATGATGTCACGACGTTGGCTCCTATTCCCCATGTGTTCTCACCGTCGAAGACGAGAGACTCTGGTGGGTTGTTGATGCCTCCTTGGTCGCGGGCGTAGATCTGAACAATCAGAATTTGGGGATTTCGATACTTTTGTTATTCAACTCACGGTCAAATTCTTTCCTGGCTTGATGCTGACATTGGCTGGAATGCTGTAGACGATCTCGCGTCTTCCGTCCAACTTTCTTCTGATCTTGTGCTCACCGACGTTCTCATCCTGAAACAATTCTCTTTTATTTCTTGAACCTCAAATCTTGTCCCTTACCTTGTTTCTGCTCGTGTTCTCAAGTTTGATGAACTTTCCATTTGGATCGCACTCAGAAATGGTCACATTTCCCTTGGCAGACCTCTGGAAAGTGGTCTTAGTCGACACTTCACCGCGAACCGATCTCGTCGAGTCGGTGTTTTCTTGTTGTTGGAGAGAGTGAGTCTTGACGGCTTGCTCAACCATTTGGGTGAGTCCAACTCTGTAACAACATGGTGGAAACTCTTCAGAATACAAGGAATCTAACCTGCTCTCTTCTTGCTCAAGCATCTTTCTGTAGATGGCGATTTCGGCATCCAACATTTGCTTGGTATCCAAAAGGGCTTGGAGCTCAGCAACCAATGTCTGGCATTCCTCACGCATTCTTCTCAAAGTGGCATCTCTGTCGTTGAGAGCAGCCTCGTATTGTCTTTGATCGTCGGCCAACTGGTAGTTCAAGTTCTGGACTTCCTTCTCCAAAAGTGAGTTCTTGTTCTCCAAATCTCCCAATTTTCCACGGAGATCTCCAATGTTATCTCTCATTCT</canonical>
            <polymorphic>GGGGTAGGAACCGAGAAGGACTATATCAAGAGAAATTATGGACAGAAACTAGAGAACTTGAGTGAAATGGGGAGGGCAGGGGTGGGATAAGAAGAGGGAAGGAGTTTATTGTCCGGATTGGATGGTCTTCTGGGTGTGGGTGGCACGTTCCTCTCCATCCTTGTTCACCAATGATGTCACGACGTTGGCTCCTATTCCCCATGTGTTCTCACCGTCGAAGACGAGAGACTCTGGTGGGTTGTTGATGCCTCCTTGGTCGCGGGCGTAGATCTGAACAATCAGAATTTGGGGATTTCGATACTTTTGTTATTCAACTCACGGTCAAATTCTTTCCTGGCTTGATGCTGACATTGGCTGGAATGCTGTAGACGATCTCGCGTCTTCCGTCCAACTTTCTTCTGATCTTGTGCTCACCGACGTTCTCATCCTGAAACAATTCTCTTTTATTTCTTGAACCTCAAATCTTGTCCCTTACCTTGTTTCTGCTCGTGTTCTCAAGYTTGATGAACTTTCCATTTGGATCGCACTCAGAAATGGTCACATTTCCCTTGGCAGACCTCTGGAAAGTGGTCTTAGTCGACACTTCACCGCGAACCGATCTCGTCGAGTCGGTGTTTTCTTGTTGTTGGAGAGAGTGAGTCTTGACGGCTTGCTCAACCATTTGGGTGAGTCCAACTCTGTAACAACATGGTGGAAACTCTTCAGAATACAAGGAATCTAACCTGCTCTCTTCTTGCTCAAGCATCTTTCTGTAGATGGCGATTTCGGCATCCAACATTTGCTTGGTATCCAAAAGGGCTTGGAGCTCAGCAACCAATGTCTGGCATTCCTCACGCATTCTTCTCAAAGTGGCATCTCTGTCGTTGAGAGCAGCCTCGTATTGTCTTTGATCGTCGGCCAACTGGTAGTTCAAGTTCTGGACTTCCTTCTCCAAAAGTGAGTTCTTGTTCTCCAAATCTCCCAATTTTCCACGGAGATCTCCAATGTTATCTCTCATTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTATTTCTTGAACCTCAAATC</pcr_primer_p1>
		<pcr_primer_p2>CATGTTGTTACAGAGTTGGACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTATTTCTTGAACCTCAAATCTTGTCCCTTACCTTGTTTCTGCTCGTGTTCTCAAGTTTGATGAACTTTCCATTTGGATCGCACTCAGAAATGGTCACATTTCCCTTGGCAGACCTCTGGAAAGTGGTCTTAGTCGACACTTCACCGCGAACCGATCTCGTCGAGTCGGTGTTTTCTTGTTGTTGGAGAGAGTGAGTCTTGACGGCTTGCTCAACCATTTGGGTGAGTCCAACTCTGTAACAACATG</canonical_amplicon>
		<polymorphic_amplicon>TTTTATTTCTTGAACCTCAAATCTTGTCCCTTACCTTGTTTCTGCTCGTGTTCTCAAGYTTGATGAACTTTCCATTTGGATCGCACTCAGAAATGGTCACATTTCCCTTGGCAGACCTCTGGAAAGTGGTCTTAGTCGACACTTCACCGCGAACCGATCTCGTCGAGTCGGTGTTTTCTTGTTGTTGGAGAGAGTGAGTCTTGACGGCTTGCTCAACCATTTGGGTGAGTCCAACTCTGTAACAACATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16362</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>1209643</contig_pos>
        <strand>+</strand>
        <context>ATCAAACCGT[A/C]CATATCAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGAGCAAATAGGAGAGTTCCAATCAAACCGTACATATCAATCAAACCGT</left_flank>
        <right_flank>CATATCAAGACACGAGAAGTCTGATTTGGTATAGTCTCGTACAAAAAATA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATGTTTTCTATTTGCTTTTTGAGGTTTTATTCCCTTTCAAAATGTTGCCATTTCTTATTTATATGCCAAAATGTGTATTTGCCAAAGAACTGTGGTTTTTTTGCTGGACTAGTAGTGCACTTTGAATTTTCGTATTCTTCAGAAATTGATTTCGCTATTCGAATAGTTTGATCCGGGGGCGATTCCCGGAGGATTATGTTAATGAAAACTAATTCAGGGAGACAGATTTATGGGATTTTCGGGATTGATCCGATGTGGTGGTCTACTGACTAGACCGTATGGGAATCTTGAAAAGGGATTCCTAAATTATCTCCGATTCTTGATGTGTTTTCCCTATAATCTCGGTTTTTTTTAATTCTGAGTTTCAAAAATCGTCTTTCAATAAATTTGGCACTTGGAAAGAGTACTTGAGAAAACTAGTTTTCAGTTGTAAAATTTGTGATTTGTTGAGCAAATAGGAGAGTTCCAATCAAACCGTACATATCAATCAAACCGTCCATATCAAGACACGAGAAGTCTGATTTGGTATAGTCTCGTACAAAAAATATCCCATTTTGACAGATTCTGTGGAAAATAAATATTGTTTGGTTGGCCAAGAAAAAATATCAAAAACTTTTCGATCAGAAAATTTATTTCAAAGACCGTATTTCCTCCGATAAAAGCCCAGCCGTCAAATTTTAGTTCAATTATCTCGGTTCCTGTGAAAGATATCAAAAACTTGTCAACTAATAAAATGTTTATCATAATATTAGCAACATTTCATCTATCGACAGGTTTTTGATATCTTTCCCAAAAATCGAGATAATTGAGCTCAAAGTTGACGGCTTGGGTGGGATTCAATTAAAGGAAATACAGTACCTCCATTTTTGAATGTCCATTTTTCAAATTTACGCATAAAACATAGACCGAATGAAAATTTCAAGCAACATGTCTCTGTCAGATAAATTCTTATGGAAAGTTTTTAAACGCAAAAATGAAGATCTGCGTTCTTTCCAAC</canonical>
            <polymorphic>AAAATGTTTTCTATTTGCTTTTTGAGGTTTTATTCCCTTTCAAAATGTTGCCATTTCTTATTTATATGCCAAAATGTGTATTTGCCAAAGAACTGTGGTTTTTTTGCTGGACTAGTAGTGCACTTTGAATTTTCGTATTCTTCAGAAATTGATTTCGCTATTCGAATAGTTTGATCCGGGGGCGATTCCCGGAGGATTATGTTAATGAAAACTAATTCAGGGAGACAGATTTATGGGATTTTCGGGATTGATCCGATGTGGTGGTCTACTGACTAGACCGTATGGGAATCTTGAAAAGGGATTCCTAAATTATCTCCGATTCTTGATGTGTTTTCCCTATAATCTCGGTTTTTTTTAATTCTGAGTTTCAAAAATCGTCTTTCAATAAATTTGGCACTTGGAAAGAGTACTTGAGAAAACTAGTTTTCAGTTGTAAAATTTGTGATTTGTTGAGCAAATAGGAGAGTTCCAATCAAACCGTACATATCAATCAAACCGTMCATATCAAGACACGAGAAGTCTGATTTGGTATAGTCTCGTACAAAAAATATCCCATTTTGACAGATTCTGTGGAAAATAAATATTGTTTGGTTGGCCAAGAAAAAATATCAAAAACTTTTCGATCAGAAAATTTATTTCAAAGACCGTATTTCCTCCGATAAAAGCCCAGCCGTCAAATTTTAGTTCAATTATCTCGGTTCCTGTGAAAGATATCAAAAACTTGTCAACTAATAAAATGTTTATCATAATATTAGCAACATTTCATCTATCGACAGGTTTTTGATATCTTTCCCAAAAATCGAGATAATTGAGCTCAAAGTTGACGGCTTGGGTGGGATTCAATTAAAGGAAATACAGTACCTCCATTTTTGAATGTCCATTTTTCAAATTTACGCATAAAACATAGACCGAATGAAAATTTCAAGCAACATGTCTCTGTCAGATAAATTCTTATGGAAAGTTTTTAAACGCAAAAATGAAGATCTGCGTTCTTTCCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTGATGTGTTTTCCCTATAA</pcr_primer_p1>
		<pcr_primer_p2>AGAATCTGTCAAAATGGGATATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTTGATGTGTTTTCCCTATAATCTCGGTTTTTTTTAATTCTGAGTTTCAAAAATCGTCTTTCAATAAATTTGGCACTTGGAAAGAGTACTTGAGAAAACTAGTTTTCAGTTGTAAAATTTGTGATTTGTTGAGCAAATAGGAGAGTTCCAATCAAACCGTACATATCAATCAAACCGTCCATATCAAGACACGAGAAGTCTGATTTGGTATAGTCTCGTACAAAAAATATCCCATTTTGACAGATTCT</canonical_amplicon>
		<polymorphic_amplicon>TTCTTGATGTGTTTTCCCTATAATCTCGGTTTTTTTTAATTCTGAGTTTCAAAAATCGTCTTTCAATAAATTTGGCACTTGGAAAGAGTACTTGAGAAAACTAGTTTTCAGTTGTAAAATTTGTGATTTGTTGAGCAAATAGGAGAGTTCCAATCAAACCGTACATATCAATCAAACCGTMCATATCAAGACACGAGAAGTCTGATTTGGTATAGTCTCGTACAAAAAATATCCCATTTTGACAGATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16363</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>1210046</contig_pos>
        <strand>+</strand>
        <context>ACGCATAAAA[C/G]ATAGACCGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATACAGTACCTCCATTTTTGAATGTCCATTTTTCAAATTTACGCATAAAA</left_flank>
        <right_flank>ATAGACCGAATGAAAATTTCAAGCAACATGTCTCTGTCAGATAAATTCTT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGTACTTGAGAAAACTAGTTTTCAGTTGTAAAATTTGTGATTTGTTGAGCAAATAGGAGAGTTCCAATCAAACCGTACATATCAATCAAACCGTCCATATCAAGACACGAGAAGTCTGATTTGGTATAGTCTCGTACAAAAAATATCCCATTTTGACAGATTCTGTGGAAAATAAATATTGTTTGGTTGGCCAAGAAAAAATATCAAAAACTTTTCGATCAGAAAATTTATTTCAAAGACCGTATTTCCTCCGATAAAAGCCCAGCCGTCAAATTTTAGTTCAATTATCTCGGTTCCTGTGAAAGATATCAAAAACTTGTCAACTAATAAAATGTTTATCATAATATTAGCAACATTTCATCTATCGACAGGTTTTTGATATCTTTCCCAAAAATCGAGATAATTGAGCTCAAAGTTGACGGCTTGGGTGGGATTCAATTAAAGGAAATACAGTACCTCCATTTTTGAATGTCCATTTTTCAAATTTACGCATAAAACATAGACCGAATGAAAATTTCAAGCAACATGTCTCTGTCAGATAAATTCTTATGGAAAGTTTTTAAACGCAAAAATGAAGATCTGCGTTCTTTCCAACATTCTCAGATCAATCGAAAAATATCTGTGCATGTTCGGATTAAAATTTTCTACAGAAATTGTTAAAACTAGCTAGTTTCCAGAACACATTTATCTGTAATTTTTCCAAAATAAATACTCTGCTATCTACCGTAAAACCTGTAATAGAAAGTACCCACACTGTCAACTTTGAGCTCAATTATTTCACGATAGTTTTTTTCTAGAATAAATTCCACAGAAATCCTTTCCAAAAAGTATTATCTGTGGTCTACAAAGTTTCTATTCCTCCAACGTGTTATCTTTTTTCATTTTCCCCAAAATATCAACACGTTCGCACTGATAACGACTCAAACTCTCTCTCCTTCAATCGTTCAAATCTATTTTGCCACCCTCACTTTTTTTAGTATACAGTACTGTAAAAACCA</canonical>
            <polymorphic>AGAGTACTTGAGAAAACTAGTTTTCAGTTGTAAAATTTGTGATTTGTTGAGCAAATAGGAGAGTTCCAATCAAACCGTACATATCAATCAAACCGTCCATATCAAGACACGAGAAGTCTGATTTGGTATAGTCTCGTACAAAAAATATCCCATTTTGACAGATTCTGTGGAAAATAAATATTGTTTGGTTGGCCAAGAAAAAATATCAAAAACTTTTCGATCAGAAAATTTATTTCAAAGACCGTATTTCCTCCGATAAAAGCCCAGCCGTCAAATTTTAGTTCAATTATCTCGGTTCCTGTGAAAGATATCAAAAACTTGTCAACTAATAAAATGTTTATCATAATATTAGCAACATTTCATCTATCGACAGGTTTTTGATATCTTTCCCAAAAATCGAGATAATTGAGCTCAAAGTTGACGGCTTGGGTGGGATTCAATTAAAGGAAATACAGTACCTCCATTTTTGAATGTCCATTTTTCAAATTTACGCATAAAASATAGACCGAATGAAAATTTCAAGCAACATGTCTCTGTCAGATAAATTCTTATGGAAAGTTTTTAAACGCAAAAATGAAGATCTGCGTTCTTTCCAACATTCTCAGATCAATCGAAAAATATCTGTGCATGTTCGGATTAAAATTTTCTACAGAAATTGTTAAAACTAGCTAGTTTCCAGAACACATTTATCTGTAATTTTTCCAAAATAAATACTCTGCTATCTACCGTAAAACCTGTAATAGAAAGTACCCACACTGTCAACTTTGAGCTCAATTATTTCACGATAGTTTTTTTCTAGAATAAATTCCACAGAAATCCTTTCCAAAAAGTATTATCTGTGGTCTACAAAGTTTCTATTCCTCCAACGTGTTATCTTTTTTCATTTTCCCCAAAATATCAACACGTTCGCACTGATAACGACTCAAACTCTCTCTCCTTCAATCGTTCAAATCTATTTTGCCACCCTCACTTTTTTTAGTATACAGTACTGTAAAAACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGACCGTATTTCCTCCGATA</pcr_primer_p1>
		<pcr_primer_p2>CTTTCCATAAGAATTTATCTGACA</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>AGACCGTATTTCCTCCGATAAAAGCCCAGCCGTCAAATTTTAGTTCAATTATCTCGGTTCCTGTGAAAGATATCAAAAACTTGTCAACTAATAAAATGTTTATCATAATATTAGCAACATTTCATCTATCGACAGGTTTTTGATATCTTTCCCAAAAATCGAGATAATTGAGCTCAAAGTTGACGGCTTGGGTGGGATTCAATTAAAGGAAATACAGTACCTCCATTTTTGAATGTCCATTTTTCAAATTTACGCATAAAACATAGACCGAATGAAAATTTCAAGCAACATGTCTCTGTCAGATAAATTCTTATGGAAAG</canonical_amplicon>
		<polymorphic_amplicon>AGACCGTATTTCCTCCGATAAAAGCCCAGCCGTCAAATTTTAGTTCAATTATCTCGGTTCCTGTGAAAGATATCAAAAACTTGTCAACTAATAAAATGTTTATCATAATATTAGCAACATTTCATCTATCGACAGGTTTTTGATATCTTTCCCAAAAATCGAGATAATTGAGCTCAAAGTTGACGGCTTGGGTGGGATTCAATTAAAGGAAATACAGTACCTCCATTTTTGAATGTCCATTTTTCAAATTTACGCATAAAASATAGACCGAATGAAAATTTCAAGCAACATGTCTCTGTCAGATAAATTCTTATGGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16364</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>1247860</contig_pos>
        <strand>+</strand>
        <context>AATTCTTTRA[A/G]GAATATACCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACCTGAAATGTTTGTAGTAAGGAAGAAAAATGTACATGAAATTCTTTGA</left_flank>
        <right_flank>GAATATACCTTCTTTTTTAACTTAATTTACTGCAAATGATCTAATAGAAC</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTTTTTTTGTTTCTAGAGAAAAAGAGAGAAAGACAGCTGATAAATAAAATAACTGATAAGCAGTTTTCATCACTTTTTGGGATGCCTGCGTCTCTTTTTGGACCCCAGGGAAATTAATATTTGGAAAGAAATTAAAAATTCTTGTTGTGCTTTAATTTTTTTTCCTTGGAGACTAGTTAATCAGCAAAATAAACTTTGATCTATTAGAAATGATTTAATATTTCAGATGGCGGCTGGTGGACAACCCCAAGGCGCTGCACCGGGACAACCGGATCAGAACTTTGACTACATGTTCAAGGTGAGAGAGAGAGGATGAGGATATATTGAAAAAGGATTGCAATTAAATATAATACGATTGTGTCAAGGAAATTATTATTTTTCTTCAAGCCAAGCCAAATAAAATGGGCGGAGCCTAGAGAATGTAGTCCGAAATCTCGAGGTTTTCATACCTGAAATGTTTGTAGTAAGGAAGAAAAATGTACATGAAATTCTTTGAAGAATATACCTTCTTTTTTAACTTAATTTACTGCAAATGATCTAATAGAACGCCGTCTCTAACTTTCAACTTTGAGTCAATTTATCTCGGTTCCTGTGGAAGATATCAAAAACCTGTTAACTAAGAAAATGTTTATCATTTTATCAAATTGTTTATCATTTTATCACCAACAATTTATTAGTCAACACAAATTTGATATCTTTCATAGGAATTGAGATAATTAAGCTCAAAGATAGGGTGCGCTTCTAATAGAGCACTTCTTTGTTCCTTGGAAGTCGTGAGGTTTAAGGAAAATATCCGTTCTGAAGAAACGATTTTAAACTAAGTTATTTAATTACTTCAAATGAAAGCCATTAATTAGTTTCTTTACAGTAATCTTATAGTTTTTTCGGAACTATATTTGAAAAAAGCTCAACCGATTTCCAAATTCAAACCATTAACTTTGAGCCCGTATATCTCGAATCGTGTGAAAGATATCAAAAAGTTATTAACTGACAAAAT</canonical>
            <polymorphic>TATTTTTTTTTGTTTCTAGAGAAAAAGAGAGAAAGACAGCTGATAAATAAAATAACTGATAAGCAGTTTTCATCACTTTTTGGGATGCCTGCGTCTCTTTTTGGACCCCAGGGAAATTAATATTTGGAAAGAAATTAAAAATTCTTGTTGTGCTTTAATTTTTTTTCCTTGGAGACTAGTTAATCAGCAAAATAAACTTTGATCTATTAGAAATGATTTAATATTTCAGATGGCGGCTGGTGGACAACCCCAAGGCGCTGCACCGGGACAACCGGATCAGAACTTTGACTACATGTTCAAGGTGAGAGAGAGAGGATGAGGATATATTGAAAAAGGATTGCAATTAAATATAATACGATTGTGTCAAGGAAATTATTATTTTTCTTCAAGCCAAGCCAAATAAAATGGGCGGAGCCTAGAGAATGTAGTCCGAAATCTCGAGGTTTTCATACCTGAAATGTTTGTAGTAAGGAAGAAAAATGTACATGAAATTCTTTGARGAATATACCTTCTTTTTTAACTTAATTTACTGCAAATGATCTAATAGAACGCCGTCTCTAACTTTCAACTTTGAGTCAATTTATCTCGGTTCCTGTGGAAGATATCAAAAACCTGTTAACTAAGAAAATGTTTATCATTTTATCAAATTGTTTATCATTTTATCACCAACAATTTATTAGTCAACACAAATTTGATATCTTTCATAGGAATTGAGATAATTAAGCTCAAAGATAGGGTGCGCTTCTAATAGAGCACTTCTTTGTTCCTTGGAAGTCGTGAGGTTTAAGGAAAATATCCGTTCTGAAGAAACGATTTTAAACTAAGTTATTTAATTACTTCAAATGAAAGCCATTAATTAGTTTCTTTACAGTAATCTTATAGTTTTTTCGGAACTATATTTGAAAAAAGCTCAACCGATTTCCAAATTCAAACCATTAACTTTGAGCCCGTATATCTCGAATCGTGTGAAAGATATCAAAAAGTTATTAACTGACAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCATACCTGAAATGTTTGT</pcr_primer_p1>
		<pcr_primer_p2>TTCCAAGGAACAAAGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>331</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCATACCTGAAATGTTTGTAGTAAGGAAGAAAAATGTACATGAAATTCTTTGAAGAATATACCTTCTTTTTTAACTTAATTTACTGCAAATGATCTAATAGAACGCCGTCTCTAACTTTCAACTTTGAGTCAATTTATCTCGGTTCCTGTGGAAGATATCAAAAACCTGTTAACTAAGAAAATGTTTATCATTTTATCAAATTGTTTATCATTTTATCACCAACAATTTATTAGTCAACACAAATTTGATATCTTTCATAGGAATTGAGATAATTAAGCTCAAAGATAGGGTGCGCTTCTAATAGAGCACTTCTTTGTTCCTTGGAA</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCATACCTGAAATGTTTGTAGTAAGGAAGAAAAATGTACATGAAATTCTTTGARGAATATACCTTCTTTTTTAACTTAATTTACTGCAAATGATCTAATAGAACGCCGTCTCTAACTTTCAACTTTGAGTCAATTTATCTCGGTTCCTGTGGAAGATATCAAAAACCTGTTAACTAAGAAAATGTTTATCATTTTATCAAATTGTTTATCATTTTATCACCAACAATTTATTAGTCAACACAAATTTGATATCTTTCATAGGAATTGAGATAATTAAGCTCAAAGATAGGGTGCGCTTCTAATAGAGCACTTCTTTGTTCCTTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16365</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>1247858</contig_pos>
        <strand>+</strand>
        <context>GAAATTCTTT[A/G]ARGAATATAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATACCTGAAATGTTTGTAGTAAGGAAGAAAAATGTACATGAAATTCTTT</left_flank>
        <right_flank>AAGAATATACCTTCTTTTTTAACTTAATTTACTGCAAATGATCTAATAGA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATTTTTTTTTGTTTCTAGAGAAAAAGAGAGAAAGACAGCTGATAAATAAAATAACTGATAAGCAGTTTTCATCACTTTTTGGGATGCCTGCGTCTCTTTTTGGACCCCAGGGAAATTAATATTTGGAAAGAAATTAAAAATTCTTGTTGTGCTTTAATTTTTTTTCCTTGGAGACTAGTTAATCAGCAAAATAAACTTTGATCTATTAGAAATGATTTAATATTTCAGATGGCGGCTGGTGGACAACCCCAAGGCGCTGCACCGGGACAACCGGATCAGAACTTTGACTACATGTTCAAGGTGAGAGAGAGAGGATGAGGATATATTGAAAAAGGATTGCAATTAAATATAATACGATTGTGTCAAGGAAATTATTATTTTTCTTCAAGCCAAGCCAAATAAAATGGGCGGAGCCTAGAGAATGTAGTCCGAAATCTCGAGGTTTTCATACCTGAAATGTTTGTAGTAAGGAAGAAAAATGTACATGAAATTCTTTGAAGAATATACCTTCTTTTTTAACTTAATTTACTGCAAATGATCTAATAGAACGCCGTCTCTAACTTTCAACTTTGAGTCAATTTATCTCGGTTCCTGTGGAAGATATCAAAAACCTGTTAACTAAGAAAATGTTTATCATTTTATCAAATTGTTTATCATTTTATCACCAACAATTTATTAGTCAACACAAATTTGATATCTTTCATAGGAATTGAGATAATTAAGCTCAAAGATAGGGTGCGCTTCTAATAGAGCACTTCTTTGTTCCTTGGAAGTCGTGAGGTTTAAGGAAAATATCCGTTCTGAAGAAACGATTTTAAACTAAGTTATTTAATTACTTCAAATGAAAGCCATTAATTAGTTTCTTTACAGTAATCTTATAGTTTTTTCGGAACTATATTTGAAAAAAGCTCAACCGATTTCCAAATTCAAACCATTAACTTTGAGCCCGTATATCTCGAATCGTGTGAAAGATATCAAAAAGTTATTAACTGACAAA</canonical>
            <polymorphic>ATTATTTTTTTTTGTTTCTAGAGAAAAAGAGAGAAAGACAGCTGATAAATAAAATAACTGATAAGCAGTTTTCATCACTTTTTGGGATGCCTGCGTCTCTTTTTGGACCCCAGGGAAATTAATATTTGGAAAGAAATTAAAAATTCTTGTTGTGCTTTAATTTTTTTTCCTTGGAGACTAGTTAATCAGCAAAATAAACTTTGATCTATTAGAAATGATTTAATATTTCAGATGGCGGCTGGTGGACAACCCCAAGGCGCTGCACCGGGACAACCGGATCAGAACTTTGACTACATGTTCAAGGTGAGAGAGAGAGGATGAGGATATATTGAAAAAGGATTGCAATTAAATATAATACGATTGTGTCAAGGAAATTATTATTTTTCTTCAAGCCAAGCCAAATAAAATGGGCGGAGCCTAGAGAATGTAGTCCGAAATCTCGAGGTTTTCATACCTGAAATGTTTGTAGTAAGGAAGAAAAATGTACATGAAATTCTTTRAAGAATATACCTTCTTTTTTAACTTAATTTACTGCAAATGATCTAATAGAACGCCGTCTCTAACTTTCAACTTTGAGTCAATTTATCTCGGTTCCTGTGGAAGATATCAAAAACCTGTTAACTAAGAAAATGTTTATCATTTTATCAAATTGTTTATCATTTTATCACCAACAATTTATTAGTCAACACAAATTTGATATCTTTCATAGGAATTGAGATAATTAAGCTCAAAGATAGGGTGCGCTTCTAATAGAGCACTTCTTTGTTCCTTGGAAGTCGTGAGGTTTAAGGAAAATATCCGTTCTGAAGAAACGATTTTAAACTAAGTTATTTAATTACTTCAAATGAAAGCCATTAATTAGTTTCTTTACAGTAATCTTATAGTTTTTTCGGAACTATATTTGAAAAAAGCTCAACCGATTTCCAAATTCAAACCATTAACTTTGAGCCCGTATATCTCGAATCGTGTGAAAGATATCAAAAAGTTATTAACTGACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCATACCTGAAATGTTTGT</pcr_primer_p1>
		<pcr_primer_p2>TTCCAAGGAACAAAGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>331</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCATACCTGAAATGTTTGTAGTAAGGAAGAAAAATGTACATGAAATTCTTTGAAGAATATACCTTCTTTTTTAACTTAATTTACTGCAAATGATCTAATAGAACGCCGTCTCTAACTTTCAACTTTGAGTCAATTTATCTCGGTTCCTGTGGAAGATATCAAAAACCTGTTAACTAAGAAAATGTTTATCATTTTATCAAATTGTTTATCATTTTATCACCAACAATTTATTAGTCAACACAAATTTGATATCTTTCATAGGAATTGAGATAATTAAGCTCAAAGATAGGGTGCGCTTCTAATAGAGCACTTCTTTGTTCCTTGGAA</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCATACCTGAAATGTTTGTAGTAAGGAAGAAAAATGTACATGAAATTCTTTRAAGAATATACCTTCTTTTTTAACTTAATTTACTGCAAATGATCTAATAGAACGCCGTCTCTAACTTTCAACTTTGAGTCAATTTATCTCGGTTCCTGTGGAAGATATCAAAAACCTGTTAACTAAGAAAATGTTTATCATTTTATCAAATTGTTTATCATTTTATCACCAACAATTTATTAGTCAACACAAATTTGATATCTTTCATAGGAATTGAGATAATTAAGCTCAAAGATAGGGTGCGCTTCTAATAGAGCACTTCTTTGTTCCTTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16366</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>1269888</contig_pos>
        <strand>+</strand>
        <context>ATGTTGCATT[A/T]TGTTTCTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGGTCCATACAAGTCACTTGAGATCTGAAACAACGTCTAATGTTGCATT</left_flank>
        <right_flank>TGTTTCTTCAGTGGGAATTGTTCTACTTTCTGTTAACTGTTTTGCATTCG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCACCAATGAATCATTCCATGTTAAGCCAACAAGAAAAAATACTGAAAAGGTTCTGGGTTACAGGATATTTACAATTCTCTGGTTGTACGAGTTTCTGGAAGCGGCAGGCACTGATTTCGAAAATGTTAGAATCCGGGACAATTAACGAAGTCAGATGTGATTCCATTCAGTTTGGATAACTTCTATTTTTTATGAAGAAACATTGGATACATTATTAGAAATAATTTGAATAAGAGATAATTTCTTTCGAAGTGAATAAACTTTTTGAAAATCTAACTCAAAAATCAGTTCTCTTTCAATCATTCCTTCCTATCCGCAAGATTTCTGATTTTGAACAAGATTTTGAGCCTGGTGTTTCGATTTCTCTCGTCAGGGCGAAGCACAACCCTTGAACATAAAATTTAGTGCTGAGTCTGGCTCCCAAGCTTTCTAAGCCCCACCCTCCCGAGGTCCATACAAGTCACTTGAGATCTGAAACAACGTCTAATGTTGCATTATGTTTCTTCAGTGGGAATTGTTCTACTTTCTGTTAACTGTTTTGCATTCGACTGCTGGTTTGTTGTAGTTGATAATCATGATTAGATGCTTGTTAGTTTTAAGTAAATCAGAAAATGATGTTGGTGTTTGGAAAAGTGGTGAATGTCGACTTGGCCAATGGAACAATCAAATCGGAGAAGAACTGCATTAATGACTGTTACAATCAGGCAAATTGCTTTGTGGCATACATGAATTCCAATGGAAACTGTCTTTTCTTTAATTACAACCAGTCGGTTTACGCCCCCTGTCGGGGGCTCAACCTCCTGGCTTCCGCTTTCTGTATCTTTTAATTTCTAATTAAAAAATTTTCGAGTTTAATTTCTAATTAAAAAATTTTCGAGTTTCCGAATTCACCAAAATTTTCGAAAGTTTTGCATACTATCAATTTTCTTCGAGGAATATTTGATTTCCCAAATTTTCAAAATTTCCAAACTATTGAAAAAAGATTTGTTATGTTCTG</canonical>
            <polymorphic>CAGCACCAATGAATCATTCCATGTTAAGCCAACAAGAAAAAATACTGAAAAGGTTCTGGGTTACAGGATATTTACAATTCTCTGGTTGTACGAGTTTCTGGAAGCGGCAGGCACTGATTTCGAAAATGTTAGAATCCGGGACAATTAACGAAGTCAGATGTGATTCCATTCAGTTTGGATAACTTCTATTTTTTATGAAGAAACATTGGATACATTATTAGAAATAATTTGAATAAGAGATAATTTCTTTCGAAGTGAATAAACTTTTTGAAAATCTAACTCAAAAATCAGTTCTCTTTCAATCATTCCTTCCTATCCGCAAGATTTCTGATTTTGAACAAGATTTTGAGCCTGGTGTTTCGATTTCTCTCGTCAGGGCGAAGCACAACCCTTGAACATAAAATTTAGTGCTGAGTCTGGCTCCCAAGCTTTCTAAGCCCCACCCTCCCGAGGTCCATACAAGTCACTTGAGATCTGAAACAACGTCTAATGTTGCATTWTGTTTCTTCAGTGGGAATTGTTCTACTTTCTGTTAACTGTTTTGCATTCGACTGCTGGTTTGTTGTAGTTGATAATCATGATTAGATGCTTGTTAGTTTTAAGTAAATCAGAAAATGATGTTGGTGTTTGGAAAAGTGGTGAATGTCGACTTGGCCAATGGAACAATCAAATCGGAGAAGAACTGCATTAATGACTGTTACAATCAGGCAAATTGCTTTGTGGCATACATGAATTCCAATGGAAACTGTCTTTTCTTTAATTACAACCAGTCGGTTTACGCCCCCTGTCGGGGGCTCAACCTCCTGGCTTCCGCTTTCTGTATCTTTTAATTTCTAATTAAAAAATTTTCGAGTTTAATTTCTAATTAAAAAATTTTCGAGTTTCCGAATTCACCAAAATTTTCGAAAGTTTTGCATACTATCAATTTTCTTCGAGGAATATTTGATTTCCCAAATTTTCAAAATTTCCAAACTATTGAAAAAAGATTTGTTATGTTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGATTTTGAACAAGATTTTGAG</pcr_primer_p1>
		<pcr_primer_p2>TGATTATCAACTACAACAAACCAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTGATTTTGAACAAGATTTTGAGCCTGGTGTTTCGATTTCTCTCGTCAGGGCGAAGCACAACCCTTGAACATAAAATTTAGTGCTGAGTCTGGCTCCCAAGCTTTCTAAGCCCCACCCTCCCGAGGTCCATACAAGTCACTTGAGATCTGAAACAACGTCTAATGTTGCATTATGTTTCTTCAGTGGGAATTGTTCTACTTTCTGTTAACTGTTTTGCATTCGACTGCTGGTTTGTTGTAGTTGATAATCA</canonical_amplicon>
		<polymorphic_amplicon>CTGATTTTGAACAAGATTTTGAGCCTGGTGTTTCGATTTCTCTCGTCAGGGCGAAGCACAACCCTTGAACATAAAATTTAGTGCTGAGTCTGGCTCCCAAGCTTTCTAAGCCCCACCCTCCCGAGGTCCATACAAGTCACTTGAGATCTGAAACAACGTCTAATGTTGCATTWTGTTTCTTCAGTGGGAATTGTTCTACTTTCTGTTAACTGTTTTGCATTCGACTGCTGGTTTGTTGTAGTTGATAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16367</snp_id>
        <super_contig>c009300673.Contig1</super_contig>
        <contig_pos>30120</contig_pos>
        <strand>+</strand>
        <context>GATTTTTTAT[C/T]GAATTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCGATCAAACTGTCAGGGTTTTTCGGTCAAAATTCATGATTTTTTAT</left_flank>
        <right_flank>GAATTTTTTGAGTAAATTTGGCGATTTTCAGGAAACTTTTGGGTCAATTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTAGCATTTTTGAGCGATTTTCGGGTCAAAATTCACAATTTTTTATCGAATTTTTTGAAAATTTCGGGTCGAAATTCATGATTTTTGACGATTTTTGGCAATTTTCGGGATTTTCGTTCGAATTTCCCGGGTTTTTATGTCGAAATTAATGATTTTTGAGTCAATTTTCATGGATTTTCTGGCTTATCAGGGCTGAGCAATTCCCAATATTCAGCATTTTTAACGGGTTTTTGCCGATTTTCGATCAAATTTTCAGGGTTTTTGTGTCATAATTTATGATTTTTGGGTCAATTTGGCGATTTTCAGGAATTTTTGAGTCAATTTTCATAGATTTTGGATCAAATTTTATGATTTTTGTGTCAAAATTTTAGGATTTTTGGGTCATTTTTCATTATTTTTGAAGATTTCGGTCGATTTTTAATGATTTTCGAGCGATTTTTATGGATTTTCGATCAAACTGTCAGGGTTTTTCGGTCAAAATTCATGATTTTTTATTGAATTTTTTGAGTAAATTTGGCGATTTTCAGGAAACTTTTGGGTCAATTTTTATGATTTTTGGGTGATTTTTCATGGTTTTCGGGTCAATTTTAAAAGGATTCTGAGTTGGAAAAATCATAAAAATTGCCCATTTCTCGGGCAAAAATTGTTTTTTTCAAATTTTATCAAGGCTGAGCAATGTACGAAATTCAACATTCTTTATGAAAAATTCCTCAAAAATCCATGCTTTTTTCGTCGATTTTTTGAAATAAAAAATGACTTGAAATTCATTATTTTTGGATCAAATTTTCCAATTTTTTGAATTTTTCCAAAGTTGTGGGCGTTATGCCTAAAACCAACCTCTGCTGCTCAATTGCCGATCTCACAAACTCCGTCTGCGCGTTCATCATGCCAGCCACCGAATTGACGAAACTGGTCATCGCATGCATAAACTCCGCGCTTCCTTGAATCGGTGCGCCCACCGGAATCATCGGATTCGGAAATCCAAAATTCCCAAAA</canonical>
            <polymorphic>ATTTTTAGCATTTTTGAGCGATTTTCGGGTCAAAATTCACAATTTTTTATCGAATTTTTTGAAAATTTCGGGTCGAAATTCATGATTTTTGACGATTTTTGGCAATTTTCGGGATTTTCGTTCGAATTTCCCGGGTTTTTATGTCGAAATTAATGATTTTTGAGTCAATTTTCATGGATTTTCTGGCTTATCAGGGCTGAGCAATTCCCAATATTCAGCATTTTTAACGGGTTTTTGCCGATTTTCGATCAAATTTTCAGGGTTTTTGTGTCATAATTTATGATTTTTGGGTCAATTTGGCGATTTTCAGGAATTTTTGAGTCAATTTTCATAGATTTTGGATCAAATTTTATGATTTTTGTGTCAAAATTTTAGGATTTTTGGGTCATTTTTCATTATTTTTGAAGATTTCGGTCGATTTTTAATGATTTTCGAGCGATTTTTATGGATTTTCGATCAAACTGTCAGGGTTTTTCGGTCAAAATTCATGATTTTTTATYGAATTTTTTGAGTAAATTTGGCGATTTTCAGGAAACTTTTGGGTCAATTTTTATGATTTTTGGGTGATTTTTCATGGTTTTCGGGTCAATTTTAAAAGGATTCTGAGTTGGAAAAATCATAAAAATTGCCCATTTCTCGGGCAAAAATTGTTTTTTTCAAATTTTATCAAGGCTGAGCAATGTACGAAATTCAACATTCTTTATGAAAAATTCCTCAAAAATCCATGCTTTTTTCGTCGATTTTTTGAAATAAAAAATGACTTGAAATTCATTATTTTTGGATCAAATTTTCCAATTTTTTGAATTTTTCCAAAGTTGTGGGCGTTATGCCTAAAACCAACCTCTGCTGCTCAATTGCCGATCTCACAAACTCCGTCTGCGCGTTCATCATGCCAGCCACCGAATTGACGAAACTGGTCATCGCATGCATAAACTCCGCGCTTCCTTGAATCGGTGCGCCCACCGGAATCATCGGATTCGGAAATCCAAAATTCCCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTGGGTCATTTTTCATTAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTATGATTTTTCCAACTCAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTGGGTCATTTTTCATTATTTTTGAAGATTTCGGTCGATTTTTAATGATTTTCGAGCGATTTTTATGGATTTTCGATCAAACTGTCAGGGTTTTTCGGTCAAAATTCATGATTTTTTATTGAATTTTTTGAGTAAATTTGGCGATTTTCAGGAAACTTTTGGGTCAATTTTTATGATTTTTGGGTGATTTTTCATGGTTTTCGGGTCAATTTTAAAAGGATTCTGAGTTGGAAAAATCATAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTGGGTCATTTTTCATTATTTTTGAAGATTTCGGTCGATTTTTAATGATTTTCGAGCGATTTTTATGGATTTTCGATCAAACTGTCAGGGTTTTTCGGTCAAAATTCATGATTTTTTATYGAATTTTTTGAGTAAATTTGGCGATTTTCAGGAAACTTTTGGGTCAATTTTTATGATTTTTGGGTGATTTTTCATGGTTTTCGGGTCAATTTTAAAAGGATTCTGAGTTGGAAAAATCATAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16368</snp_id>
        <super_contig>c009300673.Contig1</super_contig>
        <contig_pos>32528</contig_pos>
        <strand></strand>
        <context>TTTGACTGAA[G/A]AATGGGAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCATCATTTTAGGGCAAAAAATGCGGAATTTTAGTTTTTTTTTGACTGAA</left_flank>
        <right_flank>AATGGGAATTTTTGAGGATTTTGAGTCAAAAATGAGAATTTTTGATTGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCGGGATTTTTAGGCCAAAAAAATGGAGAATTTTAGTGTTTTTTGACTGTAAATTTGGGATTTTTCGGCCGAAAAATTTTGAATTTTTATGTTTTTTTGGCTGAAAAATAGATATTTTTCATCATTTTCAGTCAAAAATAGCGAACTTTCATGATTTTTTGACTGAAAATGAGATTTTTAAGGGATTATTAGCGCAGAAAATGATGAATTTTGGGGTTTTTTGTTTTTTTGGGGTTTTTCTGAAAAATAGATATTTTTCATCATTTTAGAGCAAAAAATGCGGAATTTCAGTTTTTTTTGACTGAAAAATGGGATTTTTTGAGGATTTTTAGCGCAGAAAATGATGAATTTTGATGTTTTTCGGCTGAAAAATAGGAATTTTTAAGGGATTTTTAGGACAAAAAATGATGAAATTTGGGGTTTTTTGACTGAAAAATAGATATTTTTCATCATTTTAGGGCAAAAAATGCGGAATTTTAGTTTTTTTTTGACTGAAGAATGGGAATTTTTGAGGATTTTGAGTCAAAAATGAGAATTTTTGATTGAAATTTTGCAACTTTTTTGGGATTTTCGGCCAAAGAATGGTAAATGTTGGGTTTTTTTTCTGAAAAAATACGGTTTTTAAGGGACTTTTAGGGCAGAAAATGATGAATTTTGATATTTTTTGGTTGAAAAATGGGATTTTTTAGGGATTTTTTGGGGCGAAAAATAGTGAACTTCTAAGTTTTTTTGACGAAAAGTGGAAGATAATTTTTGGCCGAGAAACCCAATTTTTGAGTCAAAAATCGCAAATTTTTAATGTTTTTTGGCTGCAAATAGGGAATTTCAGGGAATTTTCAGTCAAAAAATCAGCATTTTTCATGATTTTTGATTCAATTTTCATGGTTTTGACCGAAAAATTTTGGATTTTCTGATTTTCTGTCTGGAAATCAGAGAAAAAATTCGAAAGTTTGAAAATTTAAGTGGATTTTTTTCAATTCCTTAGCCGAATTTCAAG</canonical>
            <polymorphic>TTTTCGGGATTTTTAGGCCAAAAAAATGGAGAATTTTAGTGTTTTTTGACTGTAAATTTGGGATTTTTCGGCCGAAAAATTTTGAATTTTTATGTTTTTTTGGCTGAAAAATAGATATTTTTCATCATTTTCAGTCAAAAATAGCGAACTTTCATGATTTTTTGACTGAAAATGAGATTTTTAAGGGATTATTAGCGCAGAAAATGATGAATTTTGGGGTTTTTTGTTTTTTTGGGGTTTTTCTGAAAAATAGATATTTTTCATCATTTTAGAGCAAAAAATGCGGAATTTCAGTTTTTTTTGACTGAAAAATGGGATTTTTTGAGGATTTTTAGCGCAGAAAATGATGAATTTTGATGTTTTTCGGCTGAAAAATAGGAATTTTTAAGGGATTTTTAGGACAAAAAATGATGAAATTTGGGGTTTTTTGACTGAAAAATAGATATTTTTCATCATTTTAGGGCAAAAAATGCGGAATTTTAGTTTTTTTTTGACTGAARAATGGGAATTTTTGAGGATTTTGAGTCAAAAATGAGAATTTTTGATTGAAATTTTGCAACTTTTTTGGGATTTTCGGCCAAAGAATGGTAAATGTTGGGTTTTTTTTCTGAAAAAATACGGTTTTTAAGGGACTTTTAGGGCAGAAAATGATGAATTTTGATATTTTTTGGTTGAAAAATGGGATTTTTTAGGGATTTTTTGGGGCGAAAAATAGTGAACTTCTAAGTTTTTTTGACGAAAAGTGGAAGATAATTTTTGGCCGAGAAACCCAATTTTTGAGTCAAAAATCGCAAATTTTTAATGTTTTTTGGCTGCAAATAGGGAATTTCAGGGAATTTTCAGTCAAAAAATCAGCATTTTTCATGATTTTTGATTCAATTTTCATGGTTTTGACCGAAAAATTTTGGATTTTCTGATTTTCTGTCTGGAAATCAGAGAAAAAATTCGAAAGTTTGAAAATTTAAGTGGATTTTTTTCAATTCCTTAGCCGAATTTCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGATGAATTTTGATGTTTTTC</pcr_primer_p1>
		<pcr_primer_p2>ACCCAACATTTACCATTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>AATGATGAATTTTGATGTTTTTCGGCTGAAAAATAGGAATTTTTAAGGGATTTTTAGGACAAAAAATGATGAAATTTGGGGTTTTTTGACTGAAAAATAGATATTTTTCATCATTTTAGGGCAAAAAATGCGGAATTTTAGTTTTTTTTTGACTGAAGAATGGGAATTTTTGAGGATTTTGAGTCAAAAATGAGAATTTTTGATTGAAATTTTGCAACTTTTTTGGGATTTTCGGCCAAAGAATGGTAAATGTTGGGT</canonical_amplicon>
		<polymorphic_amplicon>AATGATGAATTTTGATGTTTTTCGGCTGAAAAATAGGAATTTTTAAGGGATTTTTAGGACAAAAAATGATGAAATTTGGGGTTTTTTGACTGAAAAATAGATATTTTTCATCATTTTAGGGCAAAAAATGCGGAATTTTAGTTTTTTTTTGACTGAARAATGGGAATTTTTGAGGATTTTGAGTCAAAAATGAGAATTTTTGATTGAAATTTTGCAACTTTTTTGGGATTTTCGGCCAAAGAATGGTAAATGTTGGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16369</snp_id>
        <super_contig>c009401342.Contig1</super_contig>
        <contig_pos>9677</contig_pos>
        <strand>+</strand>
        <context>TACGGTACCC[C/T]GAACACCACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCCTCAACGACAGCCCCGCGAAAAACTACAGCAGAATACTACGGTACCC</left_flank>
        <right_flank>GAACACCACCACCATATCTGACGACTTTTTACCTGTCAAACAAACTACAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCGTGCCAACCCGCCGCTGCCTGGAAAATTTTGAATTTGATGTTTTAATTTTTTTTAATAGAAAATGCGCTCTATCGAACAAAAGTTATTCGAAGTTTCTAGCTTGATTTTGAAGATAGTTATGGGGGTTTAAAGATATTTAGAGTTTTTAAAAGTTTTAGAATTTTCAACCTGCGCCTCTTAAAACAAGACGTCTACAGTACACCCTTGAAGATAGCAAACAGAAATTTGCTGGATTGTACAGGTACAGTAATCCGAAAATTTCAGAGCAAAATGTTCACTTGGCAGTATCTATAAAGCTAGCGATTTGAATGCTGAAGCAATCCAATTGGCGTTATCTGTTGGTAGGTGTCTGTTTGTGTTTCTAAATTCCAGATGTCTCCGAATTTCAGATGAACGTATCCCCATATTTCGAACCACTTTAGCTACAGTACTCTCCACTACAGTATCCTCAACGACAGCCCCGCGAAAAACTACAGCAGAATACTACGGTACCCCGAACACCACCACCATATCTGACGACTTTTTACCTGTCAAACAAACTACAGTAACCCCGAAGACCACTTTAGAATCAAAACTATAGCTTGAAACTAACAAATCGGATAATGCAGCACCCTTCATTCCTCTAAGATCCCTAACCGTTACAGCAACCATAACTACAGTATCCCCAACGACTACAGTACCCTACCTGTATGATACGTAGCCGCTGTCGATAGTTATTTGCTCGTGTGTGATCGTTGATAATCGGTTGGACGTACGATGACGGAAACCATCCGCCCATGCTGTCACCGGCGGCTCTTTCTCCGAACAGCCATCCTGCAAAATTGAGGGTTACTGTAGGCAATTTTCAAAAATTCGAGCTTTTGAAGATTGTTCTCAATGAGTAGAACTCGTTGACCGAGAATTGGAGGTGTGGCAGCTACATCTCCCCTATCTCAGCAACTCGTAAAGATATCAAAAAACTGTCAACTGATAAAATGTGGAAAATCCAATTTTGT</canonical>
            <polymorphic>TTCCGTGCCAACCCGCCGCTGCCTGGAAAATTTTGAATTTGATGTTTTAATTTTTTTTAATAGAAAATGCGCTCTATCGAACAAAAGTTATTCGAAGTTTCTAGCTTGATTTTGAAGATAGTTATGGGGGTTTAAAGATATTTAGAGTTTTTAAAAGTTTTAGAATTTTCAACCTGCGCCTCTTAAAACAAGACGTCTACAGTACACCCTTGAAGATAGCAAACAGAAATTTGCTGGATTGTACAGGTACAGTAATCCGAAAATTTCAGAGCAAAATGTTCACTTGGCAGTATCTATAAAGCTAGCGATTTGAATGCTGAAGCAATCCAATTGGCGTTATCTGTTGGTAGGTGTCTGTTTGTGTTTCTAAATTCCAGATGTCTCCGAATTTCAGATGAACGTATCCCCATATTTCGAACCACTTTAGCTACAGTACTCTCCACTACAGTATCCTCAACGACAGCCCCGCGAAAAACTACAGCAGAATACTACGGTACCCYGAACACCACCACCATATCTGACGACTTTTTACCTGTCAAACAAACTACAGTAACCCCGAAGACCACTTTAGAATCAAAACTATAGCTTGAAACTAACAAATCGGATAATGCAGCACCCTTCATTCCTCTAAGATCCCTAACCGTTACAGCAACCATAACTACAGTATCCCCAACGACTACAGTACCCTACCTGTATGATACGTAGCCGCTGTCGATAGTTATTTGCTCGTGTGTGATCGTTGATAATCGGTTGGACGTACGATGACGGAAACCATCCGCCCATGCTGTCACCGGCGGCTCTTTCTCCGAACAGCCATCCTGCAAAATTGAGGGTTACTGTAGGCAATTTTCAAAAATTCGAGCTTTTGAAGATTGTTCTCAATGAGTAGAACTCGTTGACCGAGAATTGGAGGTGTGGCAGCTACATCTCCCCTATCTCAGCAACTCGTAAAGATATCAAAAAACTGTCAACTGATAAAATGTGGAAAATCCAATTTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTGTTTCTAAATTCCAGATGT</pcr_primer_p1>
		<pcr_primer_p2>TTATCCGATTTGTTAGTTTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGTGTTTCTAAATTCCAGATGTCTCCGAATTTCAGATGAACGTATCCCCATATTTCGAACCACTTTAGCTACAGTACTCTCCACTACAGTATCCTCAACGACAGCCCCGCGAAAAACTACAGCAGAATACTACGGTACCCCGAACACCACCACCATATCTGACGACTTTTTACCTGTCAAACAAACTACAGTAACCCCGAAGACCACTTTAGAATCAAAACTATAGCTTGAAACTAACAAATCGGATAA</canonical_amplicon>
		<polymorphic_amplicon>TTGTGTTTCTAAATTCCAGATGTCTCCGAATTTCAGATGAACGTATCCCCATATTTCGAACCACTTTAGCTACAGTACTCTCCACTACAGTATCCTCAACGACAGCCCCGCGAAAAACTACAGCAGAATACTACGGTACCCYGAACACCACCACCATATCTGACGACTTTTTACCTGTCAAACAAACTACAGTAACCCCGAAGACCACTTTAGAATCAAAACTATAGCTTGAAACTAACAAATCGGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16370</snp_id>
        <super_contig>c009401342.Contig1</super_contig>
        <contig_pos>11820</contig_pos>
        <strand>+</strand>
        <context>TTGGAACTTG[C/T]CAATGCTTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATCCTCCTCGCTCCTTCATTACAATCTCTAACCACTCGATTGGAACTTG</left_flank>
        <right_flank>CAATGCTTCAGTAGCAGTTTTGTAACGATCATCAGTAGTTGGGATTCTAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCACCGCACTCAGCCATCTTTCCCGATCCGTCTCACTATCAGCTGATAACAAGAGCTCCGTCTGCTTCTCCCTGGCATTCCTCATCAACGTACACAAGAACAAATGGGGTCTTCCAACTAGATTGCTAACAGCACCCAATGGAATTTTCGGATTATCCGGCTCAATCGGTTGCATATCAACGAACCGCCTCGCCGCGTAGTCCTTACACACGAATGTCCCATTCAGCTTCTTCTTTGTGATCATGATCATATCGGAGAACAGGAAGACGTGAAGGGTTCGTGCTTTTTGCCGACTTTGGAGGATGTTTGAGGATCTTCGCTCCACTAGCTGAGTCAAAACTCCCTTCTTGACCAGGTACCGACTATTGGACACCAATGGGATCCTCTTAAGATCCGCATCTTTGTAGATCAATCGTCGATCGATATCCAACAACTGTTCAGTCCTTTCCATCCTCCTCGCTCCTTCATTACAATCTCTAACCACTCGATTGGAACTTGCCAATGCTTCAGTAGCAGTTTTGTAACGATCATCAGTAGTTGGGATTCTATCCAAGATAGCGTACAGAAGCAGTGGATACCTTGTGATTCTTTGCATCGGAAGCATCAAGAAACTTCTCATATCGAGACCCTGACACTGTTTGTTCTCCTCTAATCGTTGAACGGCTGATAGGAATCCGGGATTTTCAGATTTCAAGCGTCTTAGGGTTCGATCTTGGTAGACTTGATTGGAACAGTACTTGATGTACACCTCGAAATGCTTCTCGAAGTGCTCAGAGAGAATGTCACAGATGTCGTCGAGAATCAGATTCTCTTCTAGACGAGTCTCCAAGTCGCACAGTAGTCTGAAAAATAAGTTTCTAGAAGGTTCATGACAGAAAATCAAATTCTGAGCATTTCACAACAAGTTTGAGATTTCTAGCTCATCTAGAACTCGAGAAAGAGTCGTTTGAAATTCAGGAGGATAGAGACGCAGAGAGTTTTGTCGTCTGCGTCTCTCCT</canonical>
            <polymorphic>CTCACCGCACTCAGCCATCTTTCCCGATCCGTCTCACTATCAGCTGATAACAAGAGCTCCGTCTGCTTCTCCCTGGCATTCCTCATCAACGTACACAAGAACAAATGGGGTCTTCCAACTAGATTGCTAACAGCACCCAATGGAATTTTCGGATTATCCGGCTCAATCGGTTGCATATCAACGAACCGCCTCGCCGCGTAGTCCTTACACACGAATGTCCCATTCAGCTTCTTCTTTGTGATCATGATCATATCGGAGAACAGGAAGACGTGAAGGGTTCGTGCTTTTTGCCGACTTTGGAGGATGTTTGAGGATCTTCGCTCCACTAGCTGAGTCAAAACTCCCTTCTTGACCAGGTACCGACTATTGGACACCAATGGGATCCTCTTAAGATCCGCATCTTTGTAGATCAATCGTCGATCGATATCCAACAACTGTTCAGTCCTTTCCATCCTCCTCGCTCCTTCATTACAATCTCTAACCACTCGATTGGAACTTGYCAATGCTTCAGTAGCAGTTTTGTAACGATCATCAGTAGTTGGGATTCTATCCAAGATAGCGTACAGAAGCAGTGGATACCTTGTGATTCTTTGCATCGGAAGCATCAAGAAACTTCTCATATCGAGACCCTGACACTGTTTGTTCTCCTCTAATCGTTGAACGGCTGATAGGAATCCGGGATTTTCAGATTTCAAGCGTCTTAGGGTTCGATCTTGGTAGACTTGATTGGAACAGTACTTGATGTACACCTCGAAATGCTTCTCGAAGTGCTCAGAGAGAATGTCACAGATGTCGTCGAGAATCAGATTCTCTTCTAGACGAGTCTCCAAGTCGCACAGTAGTCTGAAAAATAAGTTTCTAGAAGGTTCATGACAGAAAATCAAATTCTGAGCATTTCACAACAAGTTTGAGATTTCTAGCTCATCTAGAACTCGAGAAAGAGTCGTTTGAAATTCAGGAGGATAGAGACGCAGAGAGTTTTGTCGTCTGCGTCTCTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCACTAGCTGAGTCAAAACT</pcr_primer_p1>
		<pcr_primer_p2>TGTACGCTATCTTGGATAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTCCACTAGCTGAGTCAAAACTCCCTTCTTGACCAGGTACCGACTATTGGACACCAATGGGATCCTCTTAAGATCCGCATCTTTGTAGATCAATCGTCGATCGATATCCAACAACTGTTCAGTCCTTTCCATCCTCCTCGCTCCTTCATTACAATCTCTAACCACTCGATTGGAACTTGCCAATGCTTCAGTAGCAGTTTTGTAACGATCATCAGTAGTTGGGATTCTATCCAAGATAGCGTACA</canonical_amplicon>
		<polymorphic_amplicon>CTCCACTAGCTGAGTCAAAACTCCCTTCTTGACCAGGTACCGACTATTGGACACCAATGGGATCCTCTTAAGATCCGCATCTTTGTAGATCAATCGTCGATCGATATCCAACAACTGTTCAGTCCTTTCCATCCTCCTCGCTCCTTCATTACAATCTCTAACCACTCGATTGGAACTTGYCAATGCTTCAGTAGCAGTTTTGTAACGATCATCAGTAGTTGGGATTCTATCCAAGATAGCGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16371</snp_id>
        <super_contig>c009401342.Contig1</super_contig>
        <contig_pos>24554</contig_pos>
        <strand>+</strand>
        <context>ATGACACTAT[A/G]CAATCTATCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTTTTTTAGAATTCGATGGCCTGAAGGATTCTGGATCCAATGACACTAT</left_flank>
        <right_flank>CAATCTATCAAGAAAAAAACCACTCAGCTATGGAGAAATGACCATCCGAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCTCGAAATTTTCCTCAGGCCCGGCGCGGCCCGGGCCCGGGTTTTGGCGGGCGGGCCCGGATTTTTACAAGTATGCTGAAAATTATTATTTCTACACGAAACTGAAATTTTAAATATCTCATAGAAATCGGAAATTTAAGAATTCTGACATCAAAAGTATGCTGAACGTTTTGAAAAGTGAAAAACCCCTCAAAAATCAAAAATTCCGAAATTCTAAAATTTTAAAAAATTCTCAAAGTTCCGATTTTTTTTTGAAAATCTGAGAATCATTTGAGAAAATTGAAATGTCTAAAAACTCTGAATCTTTAAAAAAATCAAAAACCAAAATTACAATTTCGCGGGCATCCCGACAAACAGACACACAGATAGGCGCTCGAATTTCCGTAAAAAGTTCTATTCTTCCGTTTTTTTCCGGGTTTTTTAGAATTCGATGGCCTGAAGGATTCTGGATCCAATGACACTATACAATCTATCAAGAAAAAAACCACTCAGCTATGGAGAAATGACCATCCGAATCCGATAAAACCGATCATTTTCTATTCAGAAGAACGTGTTTCAGTTCTTCTTCTATTTCCCCAAGTACCATTTAGTAGGAAATGTATATTACTTGTAACATATATGGAAAATGAAGGGGAAACGTTTACAGGAACCTACTTGAACAAAAAAAAGAGAAGACGCGGAAGAAGGACATAAAGTATAATAAAAGGGTATTAAAAAACCTTGAAAAAGAACACGAAAAATGAAGTGAAAGTGTTTGAGGTCAGAATTTGGGAATCATTGGAATCTTAGAACTCCAAAATGGACCAGGATTTTCCTAGGCCACGGCCACTGTAAGCCTCAAAAAATAATTCACAGACTGCCCAAGAAAATGATCATAACACAGAAAAAGGGCGAAATTTTTCCGACTGTTTAGCCAGGAAGACATACTTTTGCACAAAGAGCAAGAAAACCGCGGGGGTGAAAAG</canonical>
            <polymorphic>ATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCTCGAAATTTTCCTCAGGCCCGGCGCGGCCCGGGCCCGGGTTTTGGCGGGCGGGCCCGGATTTTTACAAGTATGCTGAAAATTATTATTTCTACACGAAACTGAAATTTTAAATATCTCATAGAAATCGGAAATTTAAGAATTCTGACATCAAAAGTATGCTGAACGTTTTGAAAAGTGAAAAACCCCTCAAAAATCAAAAATTCCGAAATTCTAAAATTTTAAAAAATTCTCAAAGTTCCGATTTTTTTTTGAAAATCTGAGAATCATTTGAGAAAATTGAAATGTCTAAAAACTCTGAATCTTTAAAAAAATCAAAAACCAAAATTACAATTTCGCGGGCATCCCGACAAACAGACACACAGATAGGCGCTCGAATTTCCGTAAAAAGTTCTATTCTTCCGTTTTTTTCCGGGTTTTTTAGAATTCGATGGCCTGAAGGATTCTGGATCCAATGACACTATRCAATCTATCAAGAAAAAAACCACTCAGCTATGGAGAAATGACCATCCGAATCCGATAAAACCGATCATTTTCTATTCAGAAGAACGTGTTTCAGTTCTTCTTCTATTTCCCCAAGTACCATTTAGTAGGAAATGTATATTACTTGTAACATATATGGAAAATGAAGGGGAAACGTTTACAGGAACCTACTTGAACAAAAAAAAGAGAAGACGCGGAAGAAGGACATAAAGTATAATAAAAGGGTATTAAAAAACCTTGAAAAAGAACACGAAAAATGAAGTGAAAGTGTTTGAGGTCAGAATTTGGGAATCATTGGAATCTTAGAACTCCAAAATGGACCAGGATTTTCCTAGGCCACGGCCACTGTAAGCCTCAAAAAATAATTCACAGACTGCCCAAGAAAATGATCATAACACAGAAAAAGGGCGAAATTTTTCCGACTGTTTAGCCAGGAAGACATACTTTTGCACAAAGAGCAAGAAAACCGCGGGGGTGAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGACAAACAGACACACAGATAG</pcr_primer_p1>
		<pcr_primer_p2>TACTAAATGGTACTTGGGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CGACAAACAGACACACAGATAGGCGCTCGAATTTCCGTAAAAAGTTCTATTCTTCCGTTTTTTTCCGGGTTTTTTAGAATTCGATGGCCTGAAGGATTCTGGATCCAATGACACTATACAATCTATCAAGAAAAAAACCACTCAGCTATGGAGAAATGACCATCCGAATCCGATAAAACCGATCATTTTCTATTCAGAAGAACGTGTTTCAGTTCTTCTTCTATTTCCCCAAGTACCATTTAGTA</canonical_amplicon>
		<polymorphic_amplicon>CGACAAACAGACACACAGATAGGCGCTCGAATTTCCGTAAAAAGTTCTATTCTTCCGTTTTTTTCCGGGTTTTTTAGAATTCGATGGCCTGAAGGATTCTGGATCCAATGACACTATRCAATCTATCAAGAAAAAAACCACTCAGCTATGGAGAAATGACCATCCGAATCCGATAAAACCGATCATTTTCTATTCAGAAGAACGTGTTTCAGTTCTTCTTCTATTTCCCCAAGTACCATTTAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16372</snp_id>
        <super_contig>c009401342.Contig1</super_contig>
        <contig_pos>24941</contig_pos>
        <strand>+</strand>
        <context>AAAATAATTC[A/C]CAGACTGCCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GACCAGGATTTTCCTAGGCCACGGCCACTGTAAGCCTCAAAAAATAATTC</left_flank>
        <right_flank>CAGACTGCCCAAGAAAATGATCATAACACAGAAAAAGGGCGAAATTTTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAGACACACAGATAGGCGCTCGAATTTCCGTAAAAAGTTCTATTCTTCCGTTTTTTTCCGGGTTTTTTAGAATTCGATGGCCTGAAGGATTCTGGATCCAATGACACTATACAATCTATCAAGAAAAAAACCACTCAGCTATGGAGAAATGACCATCCGAATCCGATAAAACCGATCATTTTCTATTCAGAAGAACGTGTTTCAGTTCTTCTTCTATTTCCCCAAGTACCATTTAGTAGGAAATGTATATTACTTGTAACATATATGGAAAATGAAGGGGAAACGTTTACAGGAACCTACTTGAACAAAAAAAAGAGAAGACGCGGAAGAAGGACATAAAGTATAATAAAAGGGTATTAAAAAACCTTGAAAAAGAACACGAAAAATGAAGTGAAAGTGTTTGAGGTCAGAATTTGGGAATCATTGGAATCTTAGAACTCCAAAATGGACCAGGATTTTCCTAGGCCACGGCCACTGTAAGCCTCAAAAAATAATTCACAGACTGCCCAAGAAAATGATCATAACACAGAAAAAGGGCGAAATTTTTCCGACTGTTTAGCCAGGAAGACATACTTTTGCACAAAGAGCAAGAAAACCGCGGGGGTGAAAAGAAAATGTGTTGTTTTCTATTTGTCTATGTTTTCGTTGGGTAACTTCAATGACCAGAACCACTCTAACAATGGTTATCGTCACCTTTTTTACCGGGGGAAGGGGCATCTGGACAGATAGATTGACGGATAGGAAACGTTTGTGGACCAATCAGGCCAGATTTAGAACTTCAAACGCTTGTGAACCAAAAGAGAATAAGCCTCGTGAGGGGCATTTTTTCTGAGTCTTTCATGTCCTGCCCTCTATTGTTTCATTACACCGGTCAATAAATTAAATAAATAAATAAAAAAGAAGGTACAGTGCTTAGACGCTCTTGATGCGCTCCGAAAGGGCGTCATCCTATACTCCATCTTCAAGCTCAATTATCTCAATTAATATAAAAGATAGCA</canonical>
            <polymorphic>AACAGACACACAGATAGGCGCTCGAATTTCCGTAAAAAGTTCTATTCTTCCGTTTTTTTCCGGGTTTTTTAGAATTCGATGGCCTGAAGGATTCTGGATCCAATGACACTATACAATCTATCAAGAAAAAAACCACTCAGCTATGGAGAAATGACCATCCGAATCCGATAAAACCGATCATTTTCTATTCAGAAGAACGTGTTTCAGTTCTTCTTCTATTTCCCCAAGTACCATTTAGTAGGAAATGTATATTACTTGTAACATATATGGAAAATGAAGGGGAAACGTTTACAGGAACCTACTTGAACAAAAAAAAGAGAAGACGCGGAAGAAGGACATAAAGTATAATAAAAGGGTATTAAAAAACCTTGAAAAAGAACACGAAAAATGAAGTGAAAGTGTTTGAGGTCAGAATTTGGGAATCATTGGAATCTTAGAACTCCAAAATGGACCAGGATTTTCCTAGGCCACGGCCACTGTAAGCCTCAAAAAATAATTCMCAGACTGCCCAAGAAAATGATCATAACACAGAAAAAGGGCGAAATTTTTCCGACTGTTTAGCCAGGAAGACATACTTTTGCACAAAGAGCAAGAAAACCGCGGGGGTGAAAAGAAAATGTGTTGTTTTCTATTTGTCTATGTTTTCGTTGGGTAACTTCAATGACCAGAACCACTCTAACAATGGTTATCGTCACCTTTTTTACCGGGGGAAGGGGCATCTGGACAGATAGATTGACGGATAGGAAACGTTTGTGGACCAATCAGGCCAGATTTAGAACTTCAAACGCTTGTGAACCAAAAGAGAATAAGCCTCGTGAGGGGCATTTTTTCTGAGTCTTTCATGTCCTGCCCTCTATTGTTTCATTACACCGGTCAATAAATTAAATAAATAAATAAAAAAGAAGGTACAGTGCTTAGACGCTCTTGATGCGCTCCGAAAGGGCGTCATCCTATACTCCATCTTCAAGCTCAATTATCTCAATTAATATAAAAGATAGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>180 98 87 69 66 61 54 52 52 44 38 28 27 26 24 24 21 14 13 8 6 6 2</canonical_bands>
                <polymorphic_bands>180 98 87 69 66 61 54 52 52 52 44 38 27 26 24 21 14 13 8 6 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGAAGAAGGACATAAAGTATAA</pcr_primer_p1>
		<pcr_primer_p2>TATGTCTTCCTGGCTAAACAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGGAAGAAGGACATAAAGTATAATAAAAGGGTATTAAAAAACCTTGAAAAAGAACACGAAAAATGAAGTGAAAGTGTTTGAGGTCAGAATTTGGGAATCATTGGAATCTTAGAACTCCAAAATGGACCAGGATTTTCCTAGGCCACGGCCACTGTAAGCCTCAAAAAATAATTCACAGACTGCCCAAGAAAATGATCATAACACAGAAAAAGGGCGAAATTTTTCCGACTGTTTAGCCAGGAAGACATA</canonical_amplicon>
		<polymorphic_amplicon>CGGAAGAAGGACATAAAGTATAATAAAAGGGTATTAAAAAACCTTGAAAAAGAACACGAAAAATGAAGTGAAAGTGTTTGAGGTCAGAATTTGGGAATCATTGGAATCTTAGAACTCCAAAATGGACCAGGATTTTCCTAGGCCACGGCCACTGTAAGCCTCAAAAAATAATTCMCAGACTGCCCAAGAAAATGATCATAACACAGAAAAAGGGCGAAATTTTTCCGACTGTTTAGCCAGGAAGACATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16373</snp_id>
        <super_contig>c009401342.Contig1</super_contig>
        <contig_pos>27374</contig_pos>
        <strand>+</strand>
        <context>CAAATATTTG[A/G]GTTTTCTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTGAACCCCATGACCATCTCCCTTGCCCACCTAACAGACAAATATTTG</left_flank>
        <right_flank>GTTTTCTTTTCGAATGCAAGCCAACCGTAAACCCGTTTATTTACCGCACA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGGAAAATGTAGATTTTGAAAAGTTCTTCAAAATGATTTATAAATCGAATATATTGAAAAAGAAGTTTTTGATGTAACAATAGCAATAAAATATAGGCTCTCGACAACATAGCCAAACACTAGAGGGAGGGGGGAGAGGGGTTGTAAATCAATCAAATTTTATGAGTTATGAGGAATAGAGAATGTACTATTTTATGGGATCAGTGGCCTAGGAATTTGGTTTTAGAATAACACAGTGGCCTAGGACAGGGTGAAGCTAGGCCACGTCTTCTGGAAGAAGCTCTAGAATCTATAGAATCGGCTAAAATAAGGCCATATTTAGCAAAAAAAAAACTGTAGAAAACTATATATTAGCCTAGAAAAAAAATTAGAACATTCCGGAAAACTAGTTCATAAAAACGAAAAAAAAAACTAGTTCCACAGTTTCCAATGTACCTTTAATAACAAGTTGAACCCCATGACCATCTCCCTTGCCCACCTAACAGACAAATATTTGAGTTTTCTTTTCGAATGCAAGCCAACCGTAAACCCGTTTATTTACCGCACAGATCAAGAAAACGATTCACACATTCTTGGAAGATTTCGAACGTTTTAAAGGGACAGAGTTCTAGGAGACAGCAATTTTGGAACCTTTTTCTTTGACTTTATTTATCTTGCTTCCTGTAAAAGATATCAAAAAATAGTTAACTGATAAAATGTTCATCATAAAATCAGCAACATTTTATCAGTTAACATAATTTTGATATCTTTTCTAGGAGCTAAGATAATCTACGTTTAAGATATAACACCCATAAAAAGAGAGGAAGGTGGTGGCTTAAATTAGACGTTGTATAGGCTTTGAGGATCTTCAGTTTCTAATTTGAATTTTAAAGAAAACCGGGAAAACTTCAAAAAGAGGGGTATTATAGGTACAAATGAAAAGTAAATAAAAACAGAATAGAAAGTGTGGGGCGGGGGGGTTTAGGCGGTGTATCCCTTTTCCACCCCAAGGGGATTT</canonical>
            <polymorphic>AATTGGAAAATGTAGATTTTGAAAAGTTCTTCAAAATGATTTATAAATCGAATATATTGAAAAAGAAGTTTTTGATGTAACAATAGCAATAAAATATAGGCTCTCGACAACATAGCCAAACACTAGAGGGAGGGGGGAGAGGGGTTGTAAATCAATCAAATTTTATGAGTTATGAGGAATAGAGAATGTACTATTTTATGGGATCAGTGGCCTAGGAATTTGGTTTTAGAATAACACAGTGGCCTAGGACAGGGTGAAGCTAGGCCACGTCTTCTGGAAGAAGCTCTAGAATCTATAGAATCGGCTAAAATAAGGCCATATTTAGCAAAAAAAAAACTGTAGAAAACTATATATTAGCCTAGAAAAAAAATTAGAACATTCCGGAAAACTAGTTCATAAAAACGAAAAAAAAAACTAGTTCCACAGTTTCCAATGTACCTTTAATAACAAGTTGAACCCCATGACCATCTCCCTTGCCCACCTAACAGACAAATATTTGRGTTTTCTTTTCGAATGCAAGCCAACCGTAAACCCGTTTATTTACCGCACAGATCAAGAAAACGATTCACACATTCTTGGAAGATTTCGAACGTTTTAAAGGGACAGAGTTCTAGGAGACAGCAATTTTGGAACCTTTTTCTTTGACTTTATTTATCTTGCTTCCTGTAAAAGATATCAAAAAATAGTTAACTGATAAAATGTTCATCATAAAATCAGCAACATTTTATCAGTTAACATAATTTTGATATCTTTTCTAGGAGCTAAGATAATCTACGTTTAAGATATAACACCCATAAAAAGAGAGGAAGGTGGTGGCTTAAATTAGACGTTGTATAGGCTTTGAGGATCTTCAGTTTCTAATTTGAATTTTAAAGAAAACCGGGAAAACTTCAAAAAGAGGGGTATTATAGGTACAAATGAAAAGTAAATAAAAACAGAATAGAAAGTGTGGGGCGGGGGGGTTTAGGCGGTGTATCCCTTTTCCACCCCAAGGGGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTAGAACATTCCGGAAAACTA</pcr_primer_p1>
		<pcr_primer_p2>CTCCTAGAACTCTGTCCCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTAGAACATTCCGGAAAACTAGTTCATAAAAACGAAAAAAAAAACTAGTTCCACAGTTTCCAATGTACCTTTAATAACAAGTTGAACCCCATGACCATCTCCCTTGCCCACCTAACAGACAAATATTTGAGTTTTCTTTTCGAATGCAAGCCAACCGTAAACCCGTTTATTTACCGCACAGATCAAGAAAACGATTCACACATTCTTGGAAGATTTCGAACGTTTTAAAGGGACAGAGTTCTAGGAG</canonical_amplicon>
		<polymorphic_amplicon>AATTAGAACATTCCGGAAAACTAGTTCATAAAAACGAAAAAAAAAACTAGTTCCACAGTTTCCAATGTACCTTTAATAACAAGTTGAACCCCATGACCATCTCCCTTGCCCACCTAACAGACAAATATTTGRGTTTTCTTTTCGAATGCAAGCCAACCGTAAACCCGTTTATTTACCGCACAGATCAAGAAAACGATTCACACATTCTTGGAAGATTTCGAACGTTTTAAAGGGACAGAGTTCTAGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16374</snp_id>
        <super_contig>c009401342.Contig1</super_contig>
        <contig_pos>27347</contig_pos>
        <strand>+</strand>
        <context>GACCATCTCC[C/T]TTGCCCACCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAGTTTCCAATGTACCTTTAATAACAAGTTGAACCCCATGACCATCTCC</left_flank>
        <right_flank>TTGCCCACCTAACAGACAAATATTTGAGTTTTCTTTTCGAATGCAAGCCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAATTAATATTTTTAAATGAAAAAAATTGGAAAATGTAGATTTTGAAAAGTTCTTCAAAATGATTTATAAATCGAATATATTGAAAAAGAAGTTTTTGATGTAACAATAGCAATAAAATATAGGCTCTCGACAACATAGCCAAACACTAGAGGGAGGGGGGAGAGGGGTTGTAAATCAATCAAATTTTATGAGTTATGAGGAATAGAGAATGTACTATTTTATGGGATCAGTGGCCTAGGAATTTGGTTTTAGAATAACACAGTGGCCTAGGACAGGGTGAAGCTAGGCCACGTCTTCTGGAAGAAGCTCTAGAATCTATAGAATCGGCTAAAATAAGGCCATATTTAGCAAAAAAAAAACTGTAGAAAACTATATATTAGCCTAGAAAAAAAATTAGAACATTCCGGAAAACTAGTTCATAAAAACGAAAAAAAAAACTAGTTCCACAGTTTCCAATGTACCTTTAATAACAAGTTGAACCCCATGACCATCTCCCTTGCCCACCTAACAGACAAATATTTGAGTTTTCTTTTCGAATGCAAGCCAACCGTAAACCCGTTTATTTACCGCACAGATCAAGAAAACGATTCACACATTCTTGGAAGATTTCGAACGTTTTAAAGGGACAGAGTTCTAGGAGACAGCAATTTTGGAACCTTTTTCTTTGACTTTATTTATCTTGCTTCCTGTAAAAGATATCAAAAAATAGTTAACTGATAAAATGTTCATCATAAAATCAGCAACATTTTATCAGTTAACATAATTTTGATATCTTTTCTAGGAGCTAAGATAATCTACGTTTAAGATATAACACCCATAAAAAGAGAGGAAGGTGGTGGCTTAAATTAGACGTTGTATAGGCTTTGAGGATCTTCAGTTTCTAATTTGAATTTTAAAGAAAACCGGGAAAACTTCAAAAAGAGGGGTATTATAGGTACAAATGAAAAGTAAATAAAAACAGAATAGAAAGTGTGGGGCGGGGGGGTTTAGGCGGTG</canonical>
            <polymorphic>TCAAAATTAATATTTTTAAATGAAAAAAATTGGAAAATGTAGATTTTGAAAAGTTCTTCAAAATGATTTATAAATCGAATATATTGAAAAAGAAGTTTTTGATGTAACAATAGCAATAAAATATAGGCTCTCGACAACATAGCCAAACACTAGAGGGAGGGGGGAGAGGGGTTGTAAATCAATCAAATTTTATGAGTTATGAGGAATAGAGAATGTACTATTTTATGGGATCAGTGGCCTAGGAATTTGGTTTTAGAATAACACAGTGGCCTAGGACAGGGTGAAGCTAGGCCACGTCTTCTGGAAGAAGCTCTAGAATCTATAGAATCGGCTAAAATAAGGCCATATTTAGCAAAAAAAAAACTGTAGAAAACTATATATTAGCCTAGAAAAAAAATTAGAACATTCCGGAAAACTAGTTCATAAAAACGAAAAAAAAAACTAGTTCCACAGTTTCCAATGTACCTTTAATAACAAGTTGAACCCCATGACCATCTCCYTTGCCCACCTAACAGACAAATATTTGAGTTTTCTTTTCGAATGCAAGCCAACCGTAAACCCGTTTATTTACCGCACAGATCAAGAAAACGATTCACACATTCTTGGAAGATTTCGAACGTTTTAAAGGGACAGAGTTCTAGGAGACAGCAATTTTGGAACCTTTTTCTTTGACTTTATTTATCTTGCTTCCTGTAAAAGATATCAAAAAATAGTTAACTGATAAAATGTTCATCATAAAATCAGCAACATTTTATCAGTTAACATAATTTTGATATCTTTTCTAGGAGCTAAGATAATCTACGTTTAAGATATAACACCCATAAAAAGAGAGGAAGGTGGTGGCTTAAATTAGACGTTGTATAGGCTTTGAGGATCTTCAGTTTCTAATTTGAATTTTAAAGAAAACCGGGAAAACTTCAAAAAGAGGGGTATTATAGGTACAAATGAAAAGTAAATAAAAACAGAATAGAAAGTGTGGGGCGGGGGGGTTTAGGCGGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTAGAACATTCCGGAAAACTA</pcr_primer_p1>
		<pcr_primer_p2>CTCCTAGAACTCTGTCCCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTAGAACATTCCGGAAAACTAGTTCATAAAAACGAAAAAAAAAACTAGTTCCACAGTTTCCAATGTACCTTTAATAACAAGTTGAACCCCATGACCATCTCCCTTGCCCACCTAACAGACAAATATTTGAGTTTTCTTTTCGAATGCAAGCCAACCGTAAACCCGTTTATTTACCGCACAGATCAAGAAAACGATTCACACATTCTTGGAAGATTTCGAACGTTTTAAAGGGACAGAGTTCTAGGAG</canonical_amplicon>
		<polymorphic_amplicon>AATTAGAACATTCCGGAAAACTAGTTCATAAAAACGAAAAAAAAAACTAGTTCCACAGTTTCCAATGTACCTTTAATAACAAGTTGAACCCCATGACCATCTCCYTTGCCCACCTAACAGACAAATATTTGAGTTTTCTTTTCGAATGCAAGCCAACCGTAAACCCGTTTATTTACCGCACAGATCAAGAAAACGATTCACACATTCTTGGAAGATTTCGAACGTTTTAAAGGGACAGAGTTCTAGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16375</snp_id>
        <super_contig>c009401342.Contig1</super_contig>
        <contig_pos>27305</contig_pos>
        <strand></strand>
        <context>CCACAGTTTC[C/G]AATGTACCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCGGAAAACTAGTTCATAAAAACGAAAAAAAAAACTAGTTCCACAGTTTC</left_flank>
        <right_flank>AATGTACCTTTAATAACAAGTTGAACCCCATGACCATCTCCCTTGCCCAC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAGTTTCAAATATGGGGAAGCTTTTAGGCTCATAACTCCTTTCAAAATTAATATTTTTAAATGAAAAAAATTGGAAAATGTAGATTTTGAAAAGTTCTTCAAAATGATTTATAAATCGAATATATTGAAAAAGAAGTTTTTGATGTAACAATAGCAATAAAATATAGGCTCTCGACAACATAGCCAAACACTAGAGGGAGGGGGGAGAGGGGTTGTAAATCAATCAAATTTTATGAGTTATGAGGAATAGAGAATGTACTATTTTATGGGATCAGTGGCCTAGGAATTTGGTTTTAGAATAACACAGTGGCCTAGGACAGGGTGAAGCTAGGCCACGTCTTCTGGAAGAAGCTCTAGAATCTATAGAATCGGCTAAAATAAGGCCATATTTAGCAAAAAAAAAACTGTAGAAAACTATATATTAGCCTAGAAAAAAAATTAGAACATTCCGGAAAACTAGTTCATAAAAACGAAAAAAAAAACTAGTTCCACAGTTTCCAATGTACCTTTAATAACAAGTTGAACCCCATGACCATCTCCCTTGCCCACCTAACAGACAAATATTTGAGTTTTCTTTTCGAATGCAAGCCAACCGTAAACCCGTTTATTTACCGCACAGATCAAGAAAACGATTCACACATTCTTGGAAGATTTCGAACGTTTTAAAGGGACAGAGTTCTAGGAGACAGCAATTTTGGAACCTTTTTCTTTGACTTTATTTATCTTGCTTCCTGTAAAAGATATCAAAAAATAGTTAACTGATAAAATGTTCATCATAAAATCAGCAACATTTTATCAGTTAACATAATTTTGATATCTTTTCTAGGAGCTAAGATAATCTACGTTTAAGATATAACACCCATAAAAAGAGAGGAAGGTGGTGGCTTAAATTAGACGTTGTATAGGCTTTGAGGATCTTCAGTTTCTAATTTGAATTTTAAAGAAAACCGGGAAAACTTCAAAAAGAGGGGTATTATAGGTACAAATGAAAAGTAAATA</canonical>
            <polymorphic>GCAGTTTCAAATATGGGGAAGCTTTTAGGCTCATAACTCCTTTCAAAATTAATATTTTTAAATGAAAAAAATTGGAAAATGTAGATTTTGAAAAGTTCTTCAAAATGATTTATAAATCGAATATATTGAAAAAGAAGTTTTTGATGTAACAATAGCAATAAAATATAGGCTCTCGACAACATAGCCAAACACTAGAGGGAGGGGGGAGAGGGGTTGTAAATCAATCAAATTTTATGAGTTATGAGGAATAGAGAATGTACTATTTTATGGGATCAGTGGCCTAGGAATTTGGTTTTAGAATAACACAGTGGCCTAGGACAGGGTGAAGCTAGGCCACGTCTTCTGGAAGAAGCTCTAGAATCTATAGAATCGGCTAAAATAAGGCCATATTTAGCAAAAAAAAAACTGTAGAAAACTATATATTAGCCTAGAAAAAAAATTAGAACATTCCGGAAAACTAGTTCATAAAAACGAAAAAAAAAACTAGTTCCACAGTTTCSAATGTACCTTTAATAACAAGTTGAACCCCATGACCATCTCCCTTGCCCACCTAACAGACAAATATTTGAGTTTTCTTTTCGAATGCAAGCCAACCGTAAACCCGTTTATTTACCGCACAGATCAAGAAAACGATTCACACATTCTTGGAAGATTTCGAACGTTTTAAAGGGACAGAGTTCTAGGAGACAGCAATTTTGGAACCTTTTTCTTTGACTTTATTTATCTTGCTTCCTGTAAAAGATATCAAAAAATAGTTAACTGATAAAATGTTCATCATAAAATCAGCAACATTTTATCAGTTAACATAATTTTGATATCTTTTCTAGGAGCTAAGATAATCTACGTTTAAGATATAACACCCATAAAAAGAGAGGAAGGTGGTGGCTTAAATTAGACGTTGTATAGGCTTTGAGGATCTTCAGTTTCTAATTTGAATTTTAAAGAAAACCGGGAAAACTTCAAAAAGAGGGGTATTATAGGTACAAATGAAAAGTAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTAGAACATTCCGGAAAACTA</pcr_primer_p1>
		<pcr_primer_p2>CTCCTAGAACTCTGTCCCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTAGAACATTCCGGAAAACTAGTTCATAAAAACGAAAAAAAAAACTAGTTCCACAGTTTCCAATGTACCTTTAATAACAAGTTGAACCCCATGACCATCTCCCTTGCCCACCTAACAGACAAATATTTGAGTTTTCTTTTCGAATGCAAGCCAACCGTAAACCCGTTTATTTACCGCACAGATCAAGAAAACGATTCACACATTCTTGGAAGATTTCGAACGTTTTAAAGGGACAGAGTTCTAGGAG</canonical_amplicon>
		<polymorphic_amplicon>AATTAGAACATTCCGGAAAACTAGTTCATAAAAACGAAAAAAAAAACTAGTTCCACAGTTTCSAATGTACCTTTAATAACAAGTTGAACCCCATGACCATCTCCCTTGCCCACCTAACAGACAAATATTTGAGTTTTCTTTTCGAATGCAAGCCAACCGTAAACCCGTTTATTTACCGCACAGATCAAGAAAACGATTCACACATTCTTGGAAGATTTCGAACGTTTTAAAGGGACAGAGTTCTAGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16376</snp_id>
        <super_contig>c009401342.Contig1</super_contig>
        <contig_pos>27199</contig_pos>
        <strand>+</strand>
        <context>GYCATATTTA[C/G]CAAAAAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGGAAGAAGCTCTAGAATCTATAGAATCGGCTAAAATAAGGCCATATTTA</left_flank>
        <right_flank>CAAAAAAAAAACTGTAGAAAACTATATATTAGCCTAGAAAAAAAATTAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGAAAAATGTAGATTTTAAAAAGTTCTACAAAATGATATAAAATTTGACTATATTTGAAAAACACATTTCTTTACAGAAGACGCTAAAGTAGACGCCCATTCTGCAGTTTCAAATATGGGGAAGCTTTTAGGCTCATAACTCCTTTCAAAATTAATATTTTTAAATGAAAAAAATTGGAAAATGTAGATTTTGAAAAGTTCTTCAAAATGATTTATAAATCGAATATATTGAAAAAGAAGTTTTTGATGTAACAATAGCAATAAAATATAGGCTCTCGACAACATAGCCAAACACTAGAGGGAGGGGGGAGAGGGGTTGTAAATCAATCAAATTTTATGAGTTATGAGGAATAGAGAATGTACTATTTTATGGGATCAGTGGCCTAGGAATTTGGTTTTAGAATAACACAGTGGCCTAGGACAGGGTGAAGCTAGGCCACGTCTTCTGGAAGAAGCTCTAGAATCTATAGAATCGGCTAAAATAAGGCCATATTTAGCAAAAAAAAAACTGTAGAAAACTATATATTAGCCTAGAAAAAAAATTAGAACATTCCGGAAAACTAGTTCATAAAAACGAAAAAAAAAACTAGTTCCACAGTTTCCAATGTACCTTTAATAACAAGTTGAACCCCATGACCATCTCCCTTGCCCACCTAACAGACAAATATTTGAGTTTTCTTTTCGAATGCAAGCCAACCGTAAACCCGTTTATTTACCGCACAGATCAAGAAAACGATTCACACATTCTTGGAAGATTTCGAACGTTTTAAAGGGACAGAGTTCTAGGAGACAGCAATTTTGGAACCTTTTTCTTTGACTTTATTTATCTTGCTTCCTGTAAAAGATATCAAAAAATAGTTAACTGATAAAATGTTCATCATAAAATCAGCAACATTTTATCAGTTAACATAATTTTGATATCTTTTCTAGGAGCTAAGATAATCTACGTTTAAGATATAACACCCATAAAAAGAGAGGAAGGTGGTGGCTTAAATTA</canonical>
            <polymorphic>AATTGAAAAATGTAGATTTTAAAAAGTTCTACAAAATGATATAAAATTTGACTATATTTGAAAAACACATTTCTTTACAGAAGACGCTAAAGTAGACGCCCATTCTGCAGTTTCAAATATGGGGAAGCTTTTAGGCTCATAACTCCTTTCAAAATTAATATTTTTAAATGAAAAAAATTGGAAAATGTAGATTTTGAAAAGTTCTTCAAAATGATTTATAAATCGAATATATTGAAAAAGAAGTTTTTGATGTAACAATAGCAATAAAATATAGGCTCTCGACAACATAGCCAAACACTAGAGGGAGGGGGGAGAGGGGTTGTAAATCAATCAAATTTTATGAGTTATGAGGAATAGAGAATGTACTATTTTATGGGATCAGTGGCCTAGGAATTTGGTTTTAGAATAACACAGTGGCCTAGGACAGGGTGAAGCTAGGCCACGTCTTCTGGAAGAAGCTCTAGAATCTATAGAATCGGCTAAAATAAGGCCATATTTASCAAAAAAAAAACTGTAGAAAACTATATATTAGCCTAGAAAAAAAATTAGAACATTCCGGAAAACTAGTTCATAAAAACGAAAAAAAAAACTAGTTCCACAGTTTCCAATGTACCTTTAATAACAAGTTGAACCCCATGACCATCTCCCTTGCCCACCTAACAGACAAATATTTGAGTTTTCTTTTCGAATGCAAGCCAACCGTAAACCCGTTTATTTACCGCACAGATCAAGAAAACGATTCACACATTCTTGGAAGATTTCGAACGTTTTAAAGGGACAGAGTTCTAGGAGACAGCAATTTTGGAACCTTTTTCTTTGACTTTATTTATCTTGCTTCCTGTAAAAGATATCAAAAAATAGTTAACTGATAAAATGTTCATCATAAAATCAGCAACATTTTATCAGTTAACATAATTTTGATATCTTTTCTAGGAGCTAAGATAATCTACGTTTAAGATATAACACCCATAAAAAGAGAGGAAGGTGGTGGCTTAAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTAGGAATTTGGTTTTAGAATAA</pcr_primer_p1>
		<pcr_primer_p2>GGGTTCAACTTGTTATTAAAGGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCTAGGAATTTGGTTTTAGAATAACACAGTGGCCTAGGACAGGGTGAAGCTAGGCCACGTCTTCTGGAAGAAGCTCTAGAATCTATAGAATCGGCTAAAATAAGGCCATATTTAGCAAAAAAAAAACTGTAGAAAACTATATATTAGCCTAGAAAAAAAATTAGAACATTCCGGAAAACTAGTTCATAAAAACGAAAAAAAAAACTAGTTCCACAGTTTCCAATGTACCTTTAATAACAAGTTGAACCC</canonical_amplicon>
		<polymorphic_amplicon>CCTAGGAATTTGGTTTTAGAATAACACAGTGGCCTAGGACAGGGTGAAGCTAGGCCACGTCTTCTGGAAGAAGCTCTAGAATCTATAGAATCGGCTAAAATAAGGCCATATTTASCAAAAAAAAAACTGTAGAAAACTATATATTAGCCTAGAAAAAAAATTAGAACATTCCGGAAAACTAGTTCATAAAAACGAAAAAAAAAACTAGTTCCACAGTTTCCAATGTACCTTTAATAACAAGTTGAACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16377</snp_id>
        <super_contig>c009401342.Contig1</super_contig>
        <contig_pos>27190</contig_pos>
        <strand>+</strand>
        <context>TAAAATAAGG[C/T]CATATTTASC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACGTCTTCTGGAAGAAGCTCTAGAATCTATAGAATCGGCTAAAATAAGG</left_flank>
        <right_flank>CATATTTAGCAAAAAAAAAACTGTAGAAAACTATATATTAGCCTAGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGAAACAAATTGAAAAATGTAGATTTTAAAAAGTTCTACAAAATGATATAAAATTTGACTATATTTGAAAAACACATTTCTTTACAGAAGACGCTAAAGTAGACGCCCATTCTGCAGTTTCAAATATGGGGAAGCTTTTAGGCTCATAACTCCTTTCAAAATTAATATTTTTAAATGAAAAAAATTGGAAAATGTAGATTTTGAAAAGTTCTTCAAAATGATTTATAAATCGAATATATTGAAAAAGAAGTTTTTGATGTAACAATAGCAATAAAATATAGGCTCTCGACAACATAGCCAAACACTAGAGGGAGGGGGGAGAGGGGTTGTAAATCAATCAAATTTTATGAGTTATGAGGAATAGAGAATGTACTATTTTATGGGATCAGTGGCCTAGGAATTTGGTTTTAGAATAACACAGTGGCCTAGGACAGGGTGAAGCTAGGCCACGTCTTCTGGAAGAAGCTCTAGAATCTATAGAATCGGCTAAAATAAGGCCATATTTAGCAAAAAAAAAACTGTAGAAAACTATATATTAGCCTAGAAAAAAAATTAGAACATTCCGGAAAACTAGTTCATAAAAACGAAAAAAAAAACTAGTTCCACAGTTTCCAATGTACCTTTAATAACAAGTTGAACCCCATGACCATCTCCCTTGCCCACCTAACAGACAAATATTTGAGTTTTCTTTTCGAATGCAAGCCAACCGTAAACCCGTTTATTTACCGCACAGATCAAGAAAACGATTCACACATTCTTGGAAGATTTCGAACGTTTTAAAGGGACAGAGTTCTAGGAGACAGCAATTTTGGAACCTTTTTCTTTGACTTTATTTATCTTGCTTCCTGTAAAAGATATCAAAAAATAGTTAACTGATAAAATGTTCATCATAAAATCAGCAACATTTTATCAGTTAACATAATTTTGATATCTTTTCTAGGAGCTAAGATAATCTACGTTTAAGATATAACACCCATAAAAAGAGAGGAAGGTGGTGG</canonical>
            <polymorphic>CATGAAACAAATTGAAAAATGTAGATTTTAAAAAGTTCTACAAAATGATATAAAATTTGACTATATTTGAAAAACACATTTCTTTACAGAAGACGCTAAAGTAGACGCCCATTCTGCAGTTTCAAATATGGGGAAGCTTTTAGGCTCATAACTCCTTTCAAAATTAATATTTTTAAATGAAAAAAATTGGAAAATGTAGATTTTGAAAAGTTCTTCAAAATGATTTATAAATCGAATATATTGAAAAAGAAGTTTTTGATGTAACAATAGCAATAAAATATAGGCTCTCGACAACATAGCCAAACACTAGAGGGAGGGGGGAGAGGGGTTGTAAATCAATCAAATTTTATGAGTTATGAGGAATAGAGAATGTACTATTTTATGGGATCAGTGGCCTAGGAATTTGGTTTTAGAATAACACAGTGGCCTAGGACAGGGTGAAGCTAGGCCACGTCTTCTGGAAGAAGCTCTAGAATCTATAGAATCGGCTAAAATAAGGYCATATTTAGCAAAAAAAAAACTGTAGAAAACTATATATTAGCCTAGAAAAAAAATTAGAACATTCCGGAAAACTAGTTCATAAAAACGAAAAAAAAAACTAGTTCCACAGTTTCCAATGTACCTTTAATAACAAGTTGAACCCCATGACCATCTCCCTTGCCCACCTAACAGACAAATATTTGAGTTTTCTTTTCGAATGCAAGCCAACCGTAAACCCGTTTATTTACCGCACAGATCAAGAAAACGATTCACACATTCTTGGAAGATTTCGAACGTTTTAAAGGGACAGAGTTCTAGGAGACAGCAATTTTGGAACCTTTTTCTTTGACTTTATTTATCTTGCTTCCTGTAAAAGATATCAAAAAATAGTTAACTGATAAAATGTTCATCATAAAATCAGCAACATTTTATCAGTTAACATAATTTTGATATCTTTTCTAGGAGCTAAGATAATCTACGTTTAAGATATAACACCCATAAAAAGAGAGGAAGGTGGTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 394 51 32 22</canonical_bands>
                <polymorphic_bands>552 394 32 22</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>241 163 140 136 95 55 42 32 21 19 17 15 11 8 5</canonical_bands>
                <polymorphic_bands>241 163 140 136 95 55 53 32 21 19 17 15 8 5</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 394 51 32 22</canonical_bands>
                <polymorphic_bands>552 394 32 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTAGGAATTTGGTTTTAGAATAA</pcr_primer_p1>
		<pcr_primer_p2>GGGTTCAACTTGTTATTAAAGGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCTAGGAATTTGGTTTTAGAATAACACAGTGGCCTAGGACAGGGTGAAGCTAGGCCACGTCTTCTGGAAGAAGCTCTAGAATCTATAGAATCGGCTAAAATAAGGCCATATTTAGCAAAAAAAAAACTGTAGAAAACTATATATTAGCCTAGAAAAAAAATTAGAACATTCCGGAAAACTAGTTCATAAAAACGAAAAAAAAAACTAGTTCCACAGTTTCCAATGTACCTTTAATAACAAGTTGAACCC</canonical_amplicon>
		<polymorphic_amplicon>CCTAGGAATTTGGTTTTAGAATAACACAGTGGCCTAGGACAGGGTGAAGCTAGGCCACGTCTTCTGGAAGAAGCTCTAGAATCTATAGAATCGGCTAAAATAAGGYCATATTTAGCAAAAAAAAAACTGTAGAAAACTATATATTAGCCTAGAAAAAAAATTAGAACATTCCGGAAAACTAGTTCATAAAAACGAAAAAAAAAACTAGTTCCACAGTTTCCAATGTACCTTTAATAACAAGTTGAACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16378</snp_id>
        <super_contig>c009401342.Contig1</super_contig>
        <contig_pos>27038</contig_pos>
        <strand>+</strand>
        <context>AATCAAATTT[A/T]ATGAGTTATG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGCCAAACACTAGAGGGAGGGGGGAGAGGGGTTGTAAATCAATCAAATTT</left_flank>
        <right_flank>ATGAGTTATGAGGAATAGAGAATGTACTATTTTATGGGATCAGTGGCCTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAAGCTCTACAAAATAATATAAAATTTCATTATTTTTAAAAGAACTATTTTTTTTACAGAAGGCGCTAAAGTAGACGCCCATTCTGCAGTTTCAAATATGATAAGGCGCGGTTTCAACCTTATAGCTCGCGTCAACCTTAATATTTTTACATGAAACAAATTGAAAAATGTAGATTTTAAAAAGTTCTACAAAATGATATAAAATTTGACTATATTTGAAAAACACATTTCTTTACAGAAGACGCTAAAGTAGACGCCCATTCTGCAGTTTCAAATATGGGGAAGCTTTTAGGCTCATAACTCCTTTCAAAATTAATATTTTTAAATGAAAAAAATTGGAAAATGTAGATTTTGAAAAGTTCTTCAAAATGATTTATAAATCGAATATATTGAAAAAGAAGTTTTTGATGTAACAATAGCAATAAAATATAGGCTCTCGACAACATAGCCAAACACTAGAGGGAGGGGGGAGAGGGGTTGTAAATCAATCAAATTTTATGAGTTATGAGGAATAGAGAATGTACTATTTTATGGGATCAGTGGCCTAGGAATTTGGTTTTAGAATAACACAGTGGCCTAGGACAGGGTGAAGCTAGGCCACGTCTTCTGGAAGAAGCTCTAGAATCTATAGAATCGGCTAAAATAAGGCCATATTTAGCAAAAAAAAAACTGTAGAAAACTATATATTAGCCTAGAAAAAAAATTAGAACATTCCGGAAAACTAGTTCATAAAAACGAAAAAAAAAACTAGTTCCACAGTTTCCAATGTACCTTTAATAACAAGTTGAACCCCATGACCATCTCCCTTGCCCACCTAACAGACAAATATTTGAGTTTTCTTTTCGAATGCAAGCCAACCGTAAACCCGTTTATTTACCGCACAGATCAAGAAAACGATTCACACATTCTTGGAAGATTTCGAACGTTTTAAAGGGACAGAGTTCTAGGAGACAGCAATTTTGGAACCTTTTTCTTTGACTTTATTTATCTTGCTTCC</canonical>
            <polymorphic>TTTGAAGCTCTACAAAATAATATAAAATTTCATTATTTTTAAAAGAACTATTTTTTTTACAGAAGGCGCTAAAGTAGACGCCCATTCTGCAGTTTCAAATATGATAAGGCGCGGTTTCAACCTTATAGCTCGCGTCAACCTTAATATTTTTACATGAAACAAATTGAAAAATGTAGATTTTAAAAAGTTCTACAAAATGATATAAAATTTGACTATATTTGAAAAACACATTTCTTTACAGAAGACGCTAAAGTAGACGCCCATTCTGCAGTTTCAAATATGGGGAAGCTTTTAGGCTCATAACTCCTTTCAAAATTAATATTTTTAAATGAAAAAAATTGGAAAATGTAGATTTTGAAAAGTTCTTCAAAATGATTTATAAATCGAATATATTGAAAAAGAAGTTTTTGATGTAACAATAGCAATAAAATATAGGCTCTCGACAACATAGCCAAACACTAGAGGGAGGGGGGAGAGGGGTTGTAAATCAATCAAATTTWATGAGTTATGAGGAATAGAGAATGTACTATTTTATGGGATCAGTGGCCTAGGAATTTGGTTTTAGAATAACACAGTGGCCTAGGACAGGGTGAAGCTAGGCCACGTCTTCTGGAAGAAGCTCTAGAATCTATAGAATCGGCTAAAATAAGGCCATATTTAGCAAAAAAAAAACTGTAGAAAACTATATATTAGCCTAGAAAAAAAATTAGAACATTCCGGAAAACTAGTTCATAAAAACGAAAAAAAAAACTAGTTCCACAGTTTCCAATGTACCTTTAATAACAAGTTGAACCCCATGACCATCTCCCTTGCCCACCTAACAGACAAATATTTGAGTTTTCTTTTCGAATGCAAGCCAACCGTAAACCCGTTTATTTACCGCACAGATCAAGAAAACGATTCACACATTCTTGGAAGATTTCGAACGTTTTAAAGGGACAGAGTTCTAGGAGACAGCAATTTTGGAACCTTTTTCTTTGACTTTATTTATCTTGCTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGATGTAACAATAGCAATAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTAGGCCACTGTGTTATTCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>177</pcr_amplicon_size>
		<canonical_amplicon>TTTGATGTAACAATAGCAATAAAATATAGGCTCTCGACAACATAGCCAAACACTAGAGGGAGGGGGGAGAGGGGTTGTAAATCAATCAAATTTTATGAGTTATGAGGAATAGAGAATGTACTATTTTATGGGATCAGTGGCCTAGGAATTTGGTTTTAGAATAACACAGTGGCCTAG</canonical_amplicon>
		<polymorphic_amplicon>TTTGATGTAACAATAGCAATAAAATATAGGCTCTCGACAACATAGCCAAACACTAGAGGGAGGGGGGAGAGGGGTTGTAAATCAATCAAATTTWATGAGTTATGAGGAATAGAGAATGTACTATTTTATGGGATCAGTGGCCTAGGAATTTGGTTTTAGAATAACACAGTGGCCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16379</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>7489</contig_pos>
        <strand></strand>
        <context>TTCTCCAAAC[A/C]CCGAGTTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGTAACGACAAACGTCTCTAATATTATTCCACTTTTTTTTTCTCCAAAC</left_flank>
        <right_flank>CCGAGTTTTCCGCTCCAAAACAGCAGTTGGAATTACGGGAAAGGGATGTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAATAATGTCCATTGTGGTGTAGACACTATTAGACCCCACCAATATACTGATAAAACGACAGCCAATTTTTGATCTGAAAACTACCAGAACTCGGTGTTATTTGACTAAACCAACTAAAAATATTTTTTTAGATTGATGTTTGGCACTTTCGAAAAGTTTTCTCATGAAAACTACCACTGGAATATCAAAAAATCTAGAATGTCTTAAAAATATTGCCGGCTTACATATCGGTTTTTAGATGGTGCATGGAACGGAGAAGCGCTGAATTCATAAAACTTTGTCTCTAGAAATTATTTTTGGTTGTGAATCAAATGCCGTTCATAGTTTTTTGATATCTCTTTTAGTTTTTCCTGCGCGCTCAAAATCATATCGAGCCGCTACGCGCACGTTGCGCGCGCAAAAACACTGCTGCGCAATTTTACGGTAAACGTTAGGAACGGCAAACTTTTGTAACGACAAACGTCTCTAATATTATTCCACTTTTTTTTTCTCCAAACACCGAGTTTTCCGCTCCAAAACAGCAGTTGGAATTACGGGAAAGGGATGTAGATCAAAAATAGTTGGTGAAAAAAATGTGATCTCTAATTTGAGCTCAAAATTTTGATATATTTTTTGGGAAGCAAAACTTATTTTGTTCTCGAAAAAACATGAAATCGATTTTTTTGCCTTCCGTTTTTTTTTTCATCTGTTATCTTTTTATGAAAATTTCCAGAAATGAGCTACTCACCAAGCTCAGCGCAGCCAGAAATCAAGCCAATTCCTCATAAGACTCCAGGGATGGTGGGTTCATGTGCACAATGTGAAGTTTTGTAGTTATTTTTGAGTCTCAGAAATTTGAAAGTTCCTTTTTTTCAGATTTAAATTTCAAAATCCGCCAACTCGAAGACACCGTTCATAACTGCTCTCAAAATCTCGATGGCTCCAGAAACGAATGCTATGAAGAATTGAGATATTCCGGTAAGATTTCGTAAGATAGCTCTATTATCTCATTTCTATGC</canonical>
            <polymorphic>AGAATAATGTCCATTGTGGTGTAGACACTATTAGACCCCACCAATATACTGATAAAACGACAGCCAATTTTTGATCTGAAAACTACCAGAACTCGGTGTTATTTGACTAAACCAACTAAAAATATTTTTTTAGATTGATGTTTGGCACTTTCGAAAAGTTTTCTCATGAAAACTACCACTGGAATATCAAAAAATCTAGAATGTCTTAAAAATATTGCCGGCTTACATATCGGTTTTTAGATGGTGCATGGAACGGAGAAGCGCTGAATTCATAAAACTTTGTCTCTAGAAATTATTTTTGGTTGTGAATCAAATGCCGTTCATAGTTTTTTGATATCTCTTTTAGTTTTTCCTGCGCGCTCAAAATCATATCGAGCCGCTACGCGCACGTTGCGCGCGCAAAAACACTGCTGCGCAATTTTACGGTAAACGTTAGGAACGGCAAACTTTTGTAACGACAAACGTCTCTAATATTATTCCACTTTTTTTTTCTCCAAACMCCGAGTTTTCCGCTCCAAAACAGCAGTTGGAATTACGGGAAAGGGATGTAGATCAAAAATAGTTGGTGAAAAAAATGTGATCTCTAATTTGAGCTCAAAATTTTGATATATTTTTTGGGAAGCAAAACTTATTTTGTTCTCGAAAAAACATGAAATCGATTTTTTTGCCTTCCGTTTTTTTTTTCATCTGTTATCTTTTTATGAAAATTTCCAGAAATGAGCTACTCACCAAGCTCAGCGCAGCCAGAAATCAAGCCAATTCCTCATAAGACTCCAGGGATGGTGGGTTCATGTGCACAATGTGAAGTTTTGTAGTTATTTTTGAGTCTCAGAAATTTGAAAGTTCCTTTTTTTCAGATTTAAATTTCAAAATCCGCCAACTCGAAGACACCGTTCATAACTGCTCTCAAAATCTCGATGGCTCCAGAAACGAATGCTATGAAGAATTGAGATATTCCGGTAAGATTTCGTAAGATAGCTCTATTATCTCATTTCTATGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>149 110 86 81 74 68 68 61 58 57 49 31 19 19 18 13 11 10 7 6 3 2</canonical_bands>
                <polymorphic_bands>149 110 87 86 81 74 68 61 58 57 49 31 19 18 13 11 10 7 6 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATGCCGTTCATAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TATTTTTGATCTACATCCCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAAATGCCGTTCATAGTTTTTTGATATCTCTTTTAGTTTTTCCTGCGCGCTCAAAATCATATCGAGCCGCTACGCGCACGTTGCGCGCGCAAAAACACTGCTGCGCAATTTTACGGTAAACGTTAGGAACGGCAAACTTTTGTAACGACAAACGTCTCTAATATTATTCCACTTTTTTTTTCTCCAAACACCGAGTTTTCCGCTCCAAAACAGCAGTTGGAATTACGGGAAAGGGATGTAGATCAAAAATA</canonical_amplicon>
		<polymorphic_amplicon>CAAATGCCGTTCATAGTTTTTTGATATCTCTTTTAGTTTTTCCTGCGCGCTCAAAATCATATCGAGCCGCTACGCGCACGTTGCGCGCGCAAAAACACTGCTGCGCAATTTTACGGTAAACGTTAGGAACGGCAAACTTTTGTAACGACAAACGTCTCTAATATTATTCCACTTTTTTTTTCTCCAAACMCCGAGTTTTCCGCTCCAAAACAGCAGTTGGAATTACGGGAAAGGGATGTAGATCAAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16380</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>7416</contig_pos>
        <strand></strand>
        <context>AATTTTACGG[T/C]AAACGTTAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCGCTACGCGCACGTTGCGCGCGCAAAAACACTGCTGCGCAATTTTACGG</left_flank>
        <right_flank>AAACGTTAGGAACGGCAAACTTTTGTAACGACAAACGTCTCTAATATTAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATAATGGTAGTCCAAAAATGAAAATGATTAGGGCGAAAAACGTTAAGCATATCTCACTACCCGAGAAGTGGAGAATAATGTCCATTGTGGTGTAGACACTATTAGACCCCACCAATATACTGATAAAACGACAGCCAATTTTTGATCTGAAAACTACCAGAACTCGGTGTTATTTGACTAAACCAACTAAAAATATTTTTTTAGATTGATGTTTGGCACTTTCGAAAAGTTTTCTCATGAAAACTACCACTGGAATATCAAAAAATCTAGAATGTCTTAAAAATATTGCCGGCTTACATATCGGTTTTTAGATGGTGCATGGAACGGAGAAGCGCTGAATTCATAAAACTTTGTCTCTAGAAATTATTTTTGGTTGTGAATCAAATGCCGTTCATAGTTTTTTGATATCTCTTTTAGTTTTTCCTGCGCGCTCAAAATCATATCGAGCCGCTACGCGCACGTTGCGCGCGCAAAAACACTGCTGCGCAATTTTACGGTAAACGTTAGGAACGGCAAACTTTTGTAACGACAAACGTCTCTAATATTATTCCACTTTTTTTTTCTCCAAACACCGAGTTTTCCGCTCCAAAACAGCAGTTGGAATTACGGGAAAGGGATGTAGATCAAAAATAGTTGGTGAAAAAAATGTGATCTCTAATTTGAGCTCAAAATTTTGATATATTTTTTGGGAAGCAAAACTTATTTTGTTCTCGAAAAAACATGAAATCGATTTTTTTGCCTTCCGTTTTTTTTTTCATCTGTTATCTTTTTATGAAAATTTCCAGAAATGAGCTACTCACCAAGCTCAGCGCAGCCAGAAATCAAGCCAATTCCTCATAAGACTCCAGGGATGGTGGGTTCATGTGCACAATGTGAAGTTTTGTAGTTATTTTTGAGTCTCAGAAATTTGAAAGTTCCTTTTTTTCAGATTTAAATTTCAAAATCCGCCAACTCGAAGACACCGTTCATAACTGCTCTCAAAATCTCGATGGCTCCAG</canonical>
            <polymorphic>ATATAATGGTAGTCCAAAAATGAAAATGATTAGGGCGAAAAACGTTAAGCATATCTCACTACCCGAGAAGTGGAGAATAATGTCCATTGTGGTGTAGACACTATTAGACCCCACCAATATACTGATAAAACGACAGCCAATTTTTGATCTGAAAACTACCAGAACTCGGTGTTATTTGACTAAACCAACTAAAAATATTTTTTTAGATTGATGTTTGGCACTTTCGAAAAGTTTTCTCATGAAAACTACCACTGGAATATCAAAAAATCTAGAATGTCTTAAAAATATTGCCGGCTTACATATCGGTTTTTAGATGGTGCATGGAACGGAGAAGCGCTGAATTCATAAAACTTTGTCTCTAGAAATTATTTTTGGTTGTGAATCAAATGCCGTTCATAGTTTTTTGATATCTCTTTTAGTTTTTCCTGCGCGCTCAAAATCATATCGAGCCGCTACGCGCACGTTGCGCGCGCAAAAACACTGCTGCGCAATTTTACGGYAAACGTTAGGAACGGCAAACTTTTGTAACGACAAACGTCTCTAATATTATTCCACTTTTTTTTTCTCCAAACACCGAGTTTTCCGCTCCAAAACAGCAGTTGGAATTACGGGAAAGGGATGTAGATCAAAAATAGTTGGTGAAAAAAATGTGATCTCTAATTTGAGCTCAAAATTTTGATATATTTTTTGGGAAGCAAAACTTATTTTGTTCTCGAAAAAACATGAAATCGATTTTTTTGCCTTCCGTTTTTTTTTTCATCTGTTATCTTTTTATGAAAATTTCCAGAAATGAGCTACTCACCAAGCTCAGCGCAGCCAGAAATCAAGCCAATTCCTCATAAGACTCCAGGGATGGTGGGTTCATGTGCACAATGTGAAGTTTTGTAGTTATTTTTGAGTCTCAGAAATTTGAAAGTTCCTTTTTTTCAGATTTAAATTTCAAAATCCGCCAACTCGAAGACACCGTTCATAACTGCTCTCAAAATCTCGATGGCTCCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>498 467 35</canonical_bands>
                <polymorphic_bands>965 35</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>405 367 132 96</canonical_bands>
                <polymorphic_bands>772 132 96</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATTATTTTTGGTTGTGAATC</pcr_primer_p1>
		<pcr_primer_p2>GTAATTCCAACTGCTGTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAATTATTTTTGGTTGTGAATCAAATGCCGTTCATAGTTTTTTGATATCTCTTTTAGTTTTTCCTGCGCGCTCAAAATCATATCGAGCCGCTACGCGCACGTTGCGCGCGCAAAAACACTGCTGCGCAATTTTACGGTAAACGTTAGGAACGGCAAACTTTTGTAACGACAAACGTCTCTAATATTATTCCACTTTTTTTTTCTCCAAACACCGAGTTTTCCGCTCCAAAACAGCAGTTGGAATTAC</canonical_amplicon>
		<polymorphic_amplicon>GAAATTATTTTTGGTTGTGAATCAAATGCCGTTCATAGTTTTTTGATATCTCTTTTAGTTTTTCCTGCGCGCTCAAAATCATATCGAGCCGCTACGCGCACGTTGCGCGCGCAAAAACACTGCTGCGCAATTTTACGGYAAACGTTAGGAACGGCAAACTTTTGTAACGACAAACGTCTCTAATATTATTCCACTTTTTTTTTCTCCAAACACCGAGTTTTCCGCTCCAAAACAGCAGTTGGAATTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16381</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>7350</contig_pos>
        <strand></strand>
        <context>TCCTGCGCGC[T/C]CAAAATCATA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAAATGCCGTTCATAGTTTTTTGATATCTCTTTTAGTTTTTCCTGCGCGC</left_flank>
        <right_flank>CAAAATCATATCGAGCCGCTACGCGCACGTTGCGCGCGCAAAAACACTGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCGTTGTTTACCTCCACTAATCGGTAATGGATTTCAGCAGTATTCCGGTGAGTTGGAAATATAAATATAATGGTAGTCCAAAAATGAAAATGATTAGGGCGAAAAACGTTAAGCATATCTCACTACCCGAGAAGTGGAGAATAATGTCCATTGTGGTGTAGACACTATTAGACCCCACCAATATACTGATAAAACGACAGCCAATTTTTGATCTGAAAACTACCAGAACTCGGTGTTATTTGACTAAACCAACTAAAAATATTTTTTTAGATTGATGTTTGGCACTTTCGAAAAGTTTTCTCATGAAAACTACCACTGGAATATCAAAAAATCTAGAATGTCTTAAAAATATTGCCGGCTTACATATCGGTTTTTAGATGGTGCATGGAACGGAGAAGCGCTGAATTCATAAAACTTTGTCTCTAGAAATTATTTTTGGTTGTGAATCAAATGCCGTTCATAGTTTTTTGATATCTCTTTTAGTTTTTCCTGCGCGCTCAAAATCATATCGAGCCGCTACGCGCACGTTGCGCGCGCAAAAACACTGCTGCGCAATTTTACGGTAAACGTTAGGAACGGCAAACTTTTGTAACGACAAACGTCTCTAATATTATTCCACTTTTTTTTTCTCCAAACACCGAGTTTTCCGCTCCAAAACAGCAGTTGGAATTACGGGAAAGGGATGTAGATCAAAAATAGTTGGTGAAAAAAATGTGATCTCTAATTTGAGCTCAAAATTTTGATATATTTTTTGGGAAGCAAAACTTATTTTGTTCTCGAAAAAACATGAAATCGATTTTTTTGCCTTCCGTTTTTTTTTTCATCTGTTATCTTTTTATGAAAATTTCCAGAAATGAGCTACTCACCAAGCTCAGCGCAGCCAGAAATCAAGCCAATTCCTCATAAGACTCCAGGGATGGTGGGTTCATGTGCACAATGTGAAGTTTTGTAGTTATTTTTGAGTCTCAGAAATTTGAAAGTTCCTTTTTTTCAGATTT</canonical>
            <polymorphic>CTTCGTTGTTTACCTCCACTAATCGGTAATGGATTTCAGCAGTATTCCGGTGAGTTGGAAATATAAATATAATGGTAGTCCAAAAATGAAAATGATTAGGGCGAAAAACGTTAAGCATATCTCACTACCCGAGAAGTGGAGAATAATGTCCATTGTGGTGTAGACACTATTAGACCCCACCAATATACTGATAAAACGACAGCCAATTTTTGATCTGAAAACTACCAGAACTCGGTGTTATTTGACTAAACCAACTAAAAATATTTTTTTAGATTGATGTTTGGCACTTTCGAAAAGTTTTCTCATGAAAACTACCACTGGAATATCAAAAAATCTAGAATGTCTTAAAAATATTGCCGGCTTACATATCGGTTTTTAGATGGTGCATGGAACGGAGAAGCGCTGAATTCATAAAACTTTGTCTCTAGAAATTATTTTTGGTTGTGAATCAAATGCCGTTCATAGTTTTTTGATATCTCTTTTAGTTTTTCCTGCGCGCYCAAAATCATATCGAGCCGCTACGCGCACGTTGCGCGCGCAAAAACACTGCTGCGCAATTTTACGGTAAACGTTAGGAACGGCAAACTTTTGTAACGACAAACGTCTCTAATATTATTCCACTTTTTTTTTCTCCAAACACCGAGTTTTCCGCTCCAAAACAGCAGTTGGAATTACGGGAAAGGGATGTAGATCAAAAATAGTTGGTGAAAAAAATGTGATCTCTAATTTGAGCTCAAAATTTTGATATATTTTTTGGGAAGCAAAACTTATTTTGTTCTCGAAAAAACATGAAATCGATTTTTTTGCCTTCCGTTTTTTTTTTCATCTGTTATCTTTTTATGAAAATTTCCAGAAATGAGCTACTCACCAAGCTCAGCGCAGCCAGAAATCAAGCCAATTCCTCATAAGACTCCAGGGATGGTGGGTTCATGTGCACAATGTGAAGTTTTGTAGTTATTTTTGAGTCTCAGAAATTTGAAAGTTCCTTTTTTTCAGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACATATCGGTTTTTAGATGGT</pcr_primer_p1>
		<pcr_primer_p2>TATTAGAGACGTTTGTCGTTACA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTACATATCGGTTTTTAGATGGTGCATGGAACGGAGAAGCGCTGAATTCATAAAACTTTGTCTCTAGAAATTATTTTTGGTTGTGAATCAAATGCCGTTCATAGTTTTTTGATATCTCTTTTAGTTTTTCCTGCGCGCTCAAAATCATATCGAGCCGCTACGCGCACGTTGCGCGCGCAAAAACACTGCTGCGCAATTTTACGGTAAACGTTAGGAACGGCAAACTTTTGTAACGACAAACGTCTCTAATA</canonical_amplicon>
		<polymorphic_amplicon>TTACATATCGGTTTTTAGATGGTGCATGGAACGGAGAAGCGCTGAATTCATAAAACTTTGTCTCTAGAAATTATTTTTGGTTGTGAATCAAATGCCGTTCATAGTTTTTTGATATCTCTTTTAGTTTTTCCTGCGCGCYCAAAATCATATCGAGCCGCTACGCGCACGTTGCGCGCGCAAAAACACTGCTGCGCAATTTTACGGTAAACGTTAGGAACGGCAAACTTTTGTAACGACAAACGTCTCTAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16382</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>66224</contig_pos>
        <strand>+</strand>
        <context>ACCCGAACAA[C/T]GATGACTCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCGCTGGATGTCCGTTGTACATGGGACCAGAGCGCCTCGACCCGAACAA</left_flank>
        <right_flank>GATGACTCGTACGACATCAGAAGTGATGTGTGGTCGTTGGGACTCACGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACTGTCCGTACATTGTCCGTTGTTACGGCTACTTCATCACTACGGTAAGCTAACTTCGAAGGCATTCTTCAACTACATAATCCAACTTATTTTCAGTACGACGTCCGTGTGTGTATGGAGTGTATGGCTACATGTCTTGATCGTCTGCTCGATCGCATCAAAAAGCCATTTCCAGAAAGAATTATCGGCAAGCTTAGCATCAGTATTATCAAGGCTCTGCATTACCTCAAAACAAAGCATGTAAGTGTCAAACATAAATACGTATTAGGGAGCACTTAAGCGAAAAAAGCTCATCAATCATCCTTACTAATCCGTTCTTATTGTTTCCAGCAAATCATGCATCGCGATGTCAAGCCATCCAACATCCTGCTCGATTGGAGTGGTGTCATCAAGCTCTGCGACTTTGGAATCGCTGGGCGCCTGATCGAGTCGAGAGCTCATTCGAAGACCGCTGGATGTCCGTTGTACATGGGACCAGAGCGCCTCGACCCGAACAATGATGACTCGTACGACATCAGAAGTGATGTGTGGTCGTTGGGACTCACGTTGGTCGAGTTGGCCACCGGACGCTACCCATTCGGTGGTTCGGAGTTCGAAATGATGTCCAAGATTATCCACGACGAACCACCACGTTTGGATCCCGTAAGTGAAAGGGTGTCTGAAATTAGATGGCTAGATGGCAGGAAAATAAAAATTATCTTACCAGGAAACATACCATTATTCTATTTTCAGACCATGTTCTCGGCTGAATTCTGCGACATCGTGACGTGCTGCCTCCAGCGTGACCCAACAAAACGCATGAACTACGACCAGCTTCTTCAGCACCCGTTCATCTTGAAGCACGAAGGGGTCGACACCGATGTTGAGGAGTGGTTTGCTGATGTCATGTGCGACAGCGAATAGGCATTGTTTGTTTTGTGATCCTTCCAATTGTGATACCAAAAACCGTCTCTTTCAAACACTTTCTAATTCTGGTCAAACATTGAGCTTGAGCTCTC</canonical>
            <polymorphic>CGACTGTCCGTACATTGTCCGTTGTTACGGCTACTTCATCACTACGGTAAGCTAACTTCGAAGGCATTCTTCAACTACATAATCCAACTTATTTTCAGTACGACGTCCGTGTGTGTATGGAGTGTATGGCTACATGTCTTGATCGTCTGCTCGATCGCATCAAAAAGCCATTTCCAGAAAGAATTATCGGCAAGCTTAGCATCAGTATTATCAAGGCTCTGCATTACCTCAAAACAAAGCATGTAAGTGTCAAACATAAATACGTATTAGGGAGCACTTAAGCGAAAAAAGCTCATCAATCATCCTTACTAATCCGTTCTTATTGTTTCCAGCAAATCATGCATCGCGATGTCAAGCCATCCAACATCCTGCTCGATTGGAGTGGTGTCATCAAGCTCTGCGACTTTGGAATCGCTGGGCGCCTGATCGAGTCGAGAGCTCATTCGAAGACCGCTGGATGTCCGTTGTACATGGGACCAGAGCGCCTCGACCCGAACAAYGATGACTCGTACGACATCAGAAGTGATGTGTGGTCGTTGGGACTCACGTTGGTCGAGTTGGCCACCGGACGCTACCCATTCGGTGGTTCGGAGTTCGAAATGATGTCCAAGATTATCCACGACGAACCACCACGTTTGGATCCCGTAAGTGAAAGGGTGTCTGAAATTAGATGGCTAGATGGCAGGAAAATAAAAATTATCTTACCAGGAAACATACCATTATTCTATTTTCAGACCATGTTCTCGGCTGAATTCTGCGACATCGTGACGTGCTGCCTCCAGCGTGACCCAACAAAACGCATGAACTACGACCAGCTTCTTCAGCACCCGTTCATCTTGAAGCACGAAGGGGTCGACACCGATGTTGAGGAGTGGTTTGCTGATGTCATGTGCGACAGCGAATAGGCATTGTTTGTTTTGTGATCCTTCCAATTGTGATACCAAAAACCGTCTCTTTCAAACACTTTCTAATTCTGGTCAAACATTGAGCTTGAGCTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGGAGTGGTGTCATCAAG</pcr_primer_p1>
		<pcr_primer_p2>TGGATAATCTTGGACATCATTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATTGGAGTGGTGTCATCAAGCTCTGCGACTTTGGAATCGCTGGGCGCCTGATCGAGTCGAGAGCTCATTCGAAGACCGCTGGATGTCCGTTGTACATGGGACCAGAGCGCCTCGACCCGAACAATGATGACTCGTACGACATCAGAAGTGATGTGTGGTCGTTGGGACTCACGTTGGTCGAGTTGGCCACCGGACGCTACCCATTCGGTGGTTCGGAGTTCGAAATGATGTCCAAGATTATCCA</canonical_amplicon>
		<polymorphic_amplicon>ATTGGAGTGGTGTCATCAAGCTCTGCGACTTTGGAATCGCTGGGCGCCTGATCGAGTCGAGAGCTCATTCGAAGACCGCTGGATGTCCGTTGTACATGGGACCAGAGCGCCTCGACCCGAACAAYGATGACTCGTACGACATCAGAAGTGATGTGTGGTCGTTGGGACTCACGTTGGTCGAGTTGGCCACCGGACGCTACCCATTCGGTGGTTCGGAGTTCGAAATGATGTCCAAGATTATCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16383</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>68141</contig_pos>
        <strand>+</strand>
        <context>AAGTGCAATA[A/T]AAACAACCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAACAAATACAACTTTTGCAGATCGAAAACACTTTTTTGTAAGTGCAATA</left_flank>
        <right_flank>AAACAACCAGAAATCAGAGTGGGAAGATTTTTAGAAAACAACAATCCCAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTGCTGGCTAGTGTTCCCCTCCCTCGTCACGCCCGCCCGTCCGTCTTCCGCAAGGGCCTCAATTCATTTCCGTGAGCTACTGCATACCTCTTCAACCTACTACCTTATTTCTATTGAGCAGCATGTCTCTGTCTATAAAAGGTAGATGTTTTCTTTGATTATATGATTTTTACTATATTTTCAGGAAAAGCAGCTCATATTGCTCCAAGGCGACGGCTAAGCCAAGGAAGATCTGATCCGGTTAAAATAGATCAAACTAGATCGCAGACAAGCCACGGTAGAATTGATCAAAGTACTTGCAAGCAACCCGTGTAAGTTTTCATTAGCTTAAAATCACTTCTTAGAATGTACGGAATAAACAAGCAACTTTTTTGCAGCCATAATGCTACCGACCATGAAGCCAATGAGATTTCCAATCTTGCTGACCAATATGCGCAAAGTCTTCAGCAACAAATACAACTTTTGCAGATCGAAAACACTTTTTTGTAAGTGCAATAAAAACAACCAGAAATCAGAGTGGGAAGATTTTTAGAAAACAACAATCCCAGAAGGAGGAAGAAGCAGCAGCAGGGGAAAGGATTAGGCAGCAAGAGCTAGAGGAAGAGCGGTATCGGGAGGAACAGTTTCAAAGAGAACGGGATAGGGAACGGGAGATTCACGTTCGCGAAATGGAAGAAATGCAACAACGGCGCTCGTCAACAGCATCACAGAGAGATCAGTCGCGTCGTGGCACTACCACAAAGATTTTGGCAAGAGGAAATGAGGTGAAAATAGAATAGTTAGTTTATTGTGAAAAACAGGAAAAAATGATTCAGGTGTCGTTGAATGGAGAGACGTGGTGTCAACTTCCGTCGTACCATCCACCGATTCCAGCTATCATCAGTGACCGGTCTCAGTTTTCGCAACGGCTTGCGAGAGAAAGAGTGAGTCTAGTAGTAGTGAATGGGAGGAGAAAGAAGGAGAGTGATAATTATAGGAAATAGAAGAGAATTTAGGAA</canonical>
            <polymorphic>AGGTGCTGGCTAGTGTTCCCCTCCCTCGTCACGCCCGCCCGTCCGTCTTCCGCAAGGGCCTCAATTCATTTCCGTGAGCTACTGCATACCTCTTCAACCTACTACCTTATTTCTATTGAGCAGCATGTCTCTGTCTATAAAAGGTAGATGTTTTCTTTGATTATATGATTTTTACTATATTTTCAGGAAAAGCAGCTCATATTGCTCCAAGGCGACGGCTAAGCCAAGGAAGATCTGATCCGGTTAAAATAGATCAAACTAGATCGCAGACAAGCCACGGTAGAATTGATCAAAGTACTTGCAAGCAACCCGTGTAAGTTTTCATTAGCTTAAAATCACTTCTTAGAATGTACGGAATAAACAAGCAACTTTTTTGCAGCCATAATGCTACCGACCATGAAGCCAATGAGATTTCCAATCTTGCTGACCAATATGCGCAAAGTCTTCAGCAACAAATACAACTTTTGCAGATCGAAAACACTTTTTTGTAAGTGCAATAWAAACAACCAGAAATCAGAGTGGGAAGATTTTTAGAAAACAACAATCCCAGAAGGAGGAAGAAGCAGCAGCAGGGGAAAGGATTAGGCAGCAAGAGCTAGAGGAAGAGCGGTATCGGGAGGAACAGTTTCAAAGAGAACGGGATAGGGAACGGGAGATTCACGTTCGCGAAATGGAAGAAATGCAACAACGGCGCTCGTCAACAGCATCACAGAGAGATCAGTCGCGTCGTGGCACTACCACAAAGATTTTGGCAAGAGGAAATGAGGTGAAAATAGAATAGTTAGTTTATTGTGAAAAACAGGAAAAAATGATTCAGGTGTCGTTGAATGGAGAGACGTGGTGTCAACTTCCGTCGTACCATCCACCGATTCCAGCTATCATCAGTGACCGGTCTCAGTTTTCGCAACGGCTTGCGAGAGAAAGAGTGAGTCTAGTAGTAGTGAATGGGAGGAGAAAGAAGGAGAGTGATAATTATAGGAAATAGAAGAGAATTTAGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTTCAGCAACAAATACAACTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTTGCATTTCTTCCATTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTCTTCAGCAACAAATACAACTTTTGCAGATCGAAAACACTTTTTTGTAAGTGCAATAAAAACAACCAGAAATCAGAGTGGGAAGATTTTTAGAAAACAACAATCCCAGAAGGAGGAAGAAGCAGCAGCAGGGGAAAGGATTAGGCAGCAAGAGCTAGAGGAAGAGCGGTATCGGGAGGAACAGTTTCAAAGAGAACGGGATAGGGAACGGGAGATTCACGTTCGCGAAATGGAAGAAATGCAACAA</canonical_amplicon>
		<polymorphic_amplicon>GTCTTCAGCAACAAATACAACTTTTGCAGATCGAAAACACTTTTTTGTAAGTGCAATAWAAACAACCAGAAATCAGAGTGGGAAGATTTTTAGAAAACAACAATCCCAGAAGGAGGAAGAAGCAGCAGCAGGGGAAAGGATTAGGCAGCAAGAGCTAGAGGAAGAGCGGTATCGGGAGGAACAGTTTCAAAGAGAACGGGATAGGGAACGGGAGATTCACGTTCGCGAAATGGAAGAAATGCAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16384</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>67950</contig_pos>
        <strand>+</strand>
        <context>TYGCAAGCAA[C/T]CCGTGTAAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAGATCGCAGACAAGCCACGGTAGAATTGATCAAAGTACTTGCAAGCAA</left_flank>
        <right_flank>CCGTGTAAGTTTTCATTAGCTTAAAATCACTTCTTAGAATGTACGGAATA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGAAAAAGCGGAAGGAAAAATAAATCAATCAATGAAAAGTTGATAACACCGAAAACACCTGCCCTATGAAAAGAGATGCTTACTCAACAAAAGGATTCTCGCTCTGTCATACACTTCCGCAGGAAGGAGCCCTCTCAATATTATTGGGTATTCGCCCCTCCTCGATTGTCATGGTAACCAAAGGGACTCGAGGTGCTGGCTAGTGTTCCCCTCCCTCGTCACGCCCGCCCGTCCGTCTTCCGCAAGGGCCTCAATTCATTTCCGTGAGCTACTGCATACCTCTTCAACCTACTACCTTATTTCTATTGAGCAGCATGTCTCTGTCTATAAAAGGTAGATGTTTTCTTTGATTATATGATTTTTACTATATTTTCAGGAAAAGCAGCTCATATTGCTCCAAGGCGACGGCTAAGCCAAGGAAGATCTGATCCGGTTAAAATAGATCAAACTAGATCGCAGACAAGCCACGGTAGAATTGATCAAAGTACTTGCAAGCAACCCGTGTAAGTTTTCATTAGCTTAAAATCACTTCTTAGAATGTACGGAATAAACAAGCAACTTTTTTGCAGCCATAATGCTACCGACCATGAAGCCAATGAGATTTCCAATCTTGCTGACCAATATGCGCAAAGTCTTCAGCAACAAATACAACTTTTGCAGATCGAAAACACTTTTTTGTAAGTGCAATAAAAACAACCAGAAATCAGAGTGGGAAGATTTTTAGAAAACAACAATCCCAGAAGGAGGAAGAAGCAGCAGCAGGGGAAAGGATTAGGCAGCAAGAGCTAGAGGAAGAGCGGTATCGGGAGGAACAGTTTCAAAGAGAACGGGATAGGGAACGGGAGATTCACGTTCGCGAAATGGAAGAAATGCAACAACGGCGCTCGTCAACAGCATCACAGAGAGATCAGTCGCGTCGTGGCACTACCACAAAGATTTTGGCAAGAGGAAATGAGGTGAAAATAGAATAGTTAGTTTATTGTGAAAAACAGGAAAAAA</canonical>
            <polymorphic>CGGAAAAAGCGGAAGGAAAAATAAATCAATCAATGAAAAGTTGATAACACCGAAAACACCTGCCCTATGAAAAGAGATGCTTACTCAACAAAAGGATTCTCGCTCTGTCATACACTTCCGCAGGAAGGAGCCCTCTCAATATTATTGGGTATTCGCCCCTCCTCGATTGTCATGGTAACCAAAGGGACTCGAGGTGCTGGCTAGTGTTCCCCTCCCTCGTCACGCCCGCCCGTCCGTCTTCCGCAAGGGCCTCAATTCATTTCCGTGAGCTACTGCATACCTCTTCAACCTACTACCTTATTTCTATTGAGCAGCATGTCTCTGTCTATAAAAGGTAGATGTTTTCTTTGATTATATGATTTTTACTATATTTTCAGGAAAAGCAGCTCATATTGCTCCAAGGCGACGGCTAAGCCAAGGAAGATCTGATCCGGTTAAAATAGATCAAACTAGATCGCAGACAAGCCACGGTAGAATTGATCAAAGTACTTGCAAGCAAYCCGTGTAAGTTTTCATTAGCTTAAAATCACTTCTTAGAATGTACGGAATAAACAAGCAACTTTTTTGCAGCCATAATGCTACCGACCATGAAGCCAATGAGATTTCCAATCTTGCTGACCAATATGCGCAAAGTCTTCAGCAACAAATACAACTTTTGCAGATCGAAAACACTTTTTTGTAAGTGCAATAAAAACAACCAGAAATCAGAGTGGGAAGATTTTTAGAAAACAACAATCCCAGAAGGAGGAAGAAGCAGCAGCAGGGGAAAGGATTAGGCAGCAAGAGCTAGAGGAAGAGCGGTATCGGGAGGAACAGTTTCAAAGAGAACGGGATAGGGAACGGGAGATTCACGTTCGCGAAATGGAAGAAATGCAACAACGGCGCTCGTCAACAGCATCACAGAGAGATCAGTCGCGTCGTGGCACTACCACAAAGATTTTGGCAAGAGGAAATGAGGTGAAAATAGAATAGTTAGTTTATTGTGAAAAACAGGAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGATCTGATCCGGTTAAAATAG</pcr_primer_p1>
		<pcr_primer_p2>GATCTGCAAAAGTTGTATTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAGATCTGATCCGGTTAAAATAGATCAAACTAGATCGCAGACAAGCCACGGTAGAATTGATCAAAGTACTTGCAAGCAACCCGTGTAAGTTTTCATTAGCTTAAAATCACTTCTTAGAATGTACGGAATAAACAAGCAACTTTTTTGCAGCCATAATGCTACCGACCATGAAGCCAATGAGATTTCCAATCTTGCTGACCAATATGCGCAAAGTCTTCAGCAACAAATACAACTTTTGCAGATC</canonical_amplicon>
		<polymorphic_amplicon>AAGATCTGATCCGGTTAAAATAGATCAAACTAGATCGCAGACAAGCCACGGTAGAATTGATCAAAGTACTTGCAAGCAAYCCGTGTAAGTTTTCATTAGCTTAAAATCACTTCTTAGAATGTACGGAATAAACAAGCAACTTTTTTGCAGCCATAATGCTACCGACCATGAAGCCAATGAGATTTCCAATCTTGCTGACCAATATGCGCAAAGTCTTCAGCAACAAATACAACTTTTGCAGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16385</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>67941</contig_pos>
        <strand>+</strand>
        <context>TCAAAGTACT[C/T]GCAAGCAAYC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGATCAAACTAGATCGCAGACAAGCCACGGTAGAATTGATCAAAGTACT</left_flank>
        <right_flank>GCAAGCAACCCGTGTAAGTTTTCATTAGCTTAAAATCACTTCTTAGAATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAGTAGAACGGAAAAAGCGGAAGGAAAAATAAATCAATCAATGAAAAGTTGATAACACCGAAAACACCTGCCCTATGAAAAGAGATGCTTACTCAACAAAAGGATTCTCGCTCTGTCATACACTTCCGCAGGAAGGAGCCCTCTCAATATTATTGGGTATTCGCCCCTCCTCGATTGTCATGGTAACCAAAGGGACTCGAGGTGCTGGCTAGTGTTCCCCTCCCTCGTCACGCCCGCCCGTCCGTCTTCCGCAAGGGCCTCAATTCATTTCCGTGAGCTACTGCATACCTCTTCAACCTACTACCTTATTTCTATTGAGCAGCATGTCTCTGTCTATAAAAGGTAGATGTTTTCTTTGATTATATGATTTTTACTATATTTTCAGGAAAAGCAGCTCATATTGCTCCAAGGCGACGGCTAAGCCAAGGAAGATCTGATCCGGTTAAAATAGATCAAACTAGATCGCAGACAAGCCACGGTAGAATTGATCAAAGTACTTGCAAGCAACCCGTGTAAGTTTTCATTAGCTTAAAATCACTTCTTAGAATGTACGGAATAAACAAGCAACTTTTTTGCAGCCATAATGCTACCGACCATGAAGCCAATGAGATTTCCAATCTTGCTGACCAATATGCGCAAAGTCTTCAGCAACAAATACAACTTTTGCAGATCGAAAACACTTTTTTGTAAGTGCAATAAAAACAACCAGAAATCAGAGTGGGAAGATTTTTAGAAAACAACAATCCCAGAAGGAGGAAGAAGCAGCAGCAGGGGAAAGGATTAGGCAGCAAGAGCTAGAGGAAGAGCGGTATCGGGAGGAACAGTTTCAAAGAGAACGGGATAGGGAACGGGAGATTCACGTTCGCGAAATGGAAGAAATGCAACAACGGCGCTCGTCAACAGCATCACAGAGAGATCAGTCGCGTCGTGGCACTACCACAAAGATTTTGGCAAGAGGAAATGAGGTGAAAATAGAATAGTTAGTTTATTGTGAAAAAC</canonical>
            <polymorphic>CAAGTAGAACGGAAAAAGCGGAAGGAAAAATAAATCAATCAATGAAAAGTTGATAACACCGAAAACACCTGCCCTATGAAAAGAGATGCTTACTCAACAAAAGGATTCTCGCTCTGTCATACACTTCCGCAGGAAGGAGCCCTCTCAATATTATTGGGTATTCGCCCCTCCTCGATTGTCATGGTAACCAAAGGGACTCGAGGTGCTGGCTAGTGTTCCCCTCCCTCGTCACGCCCGCCCGTCCGTCTTCCGCAAGGGCCTCAATTCATTTCCGTGAGCTACTGCATACCTCTTCAACCTACTACCTTATTTCTATTGAGCAGCATGTCTCTGTCTATAAAAGGTAGATGTTTTCTTTGATTATATGATTTTTACTATATTTTCAGGAAAAGCAGCTCATATTGCTCCAAGGCGACGGCTAAGCCAAGGAAGATCTGATCCGGTTAAAATAGATCAAACTAGATCGCAGACAAGCCACGGTAGAATTGATCAAAGTACTYGCAAGCAACCCGTGTAAGTTTTCATTAGCTTAAAATCACTTCTTAGAATGTACGGAATAAACAAGCAACTTTTTTGCAGCCATAATGCTACCGACCATGAAGCCAATGAGATTTCCAATCTTGCTGACCAATATGCGCAAAGTCTTCAGCAACAAATACAACTTTTGCAGATCGAAAACACTTTTTTGTAAGTGCAATAAAAACAACCAGAAATCAGAGTGGGAAGATTTTTAGAAAACAACAATCCCAGAAGGAGGAAGAAGCAGCAGCAGGGGAAAGGATTAGGCAGCAAGAGCTAGAGGAAGAGCGGTATCGGGAGGAACAGTTTCAAAGAGAACGGGATAGGGAACGGGAGATTCACGTTCGCGAAATGGAAGAAATGCAACAACGGCGCTCGTCAACAGCATCACAGAGAGATCAGTCGCGTCGTGGCACTACCACAAAGATTTTGGCAAGAGGAAATGAGGTGAAAATAGAATAGTTAGTTTATTGTGAAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>284 217 188 118 91 75 27</canonical_bands>
                <polymorphic_bands>292 284 188 118 91 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTATTTCTATTGAGCAGCATGT</pcr_primer_p1>
		<pcr_primer_p2>CCGTACATTCTAAGAAGTGATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTATTTCTATTGAGCAGCATGTCTCTGTCTATAAAAGGTAGATGTTTTCTTTGATTATATGATTTTTACTATATTTTCAGGAAAAGCAGCTCATATTGCTCCAAGGCGACGGCTAAGCCAAGGAAGATCTGATCCGGTTAAAATAGATCAAACTAGATCGCAGACAAGCCACGGTAGAATTGATCAAAGTACTTGCAAGCAACCCGTGTAAGTTTTCATTAGCTTAAAATCACTTCTTAGAATGTACGG</canonical_amplicon>
		<polymorphic_amplicon>CTTATTTCTATTGAGCAGCATGTCTCTGTCTATAAAAGGTAGATGTTTTCTTTGATTATATGATTTTTACTATATTTTCAGGAAAAGCAGCTCATATTGCTCCAAGGCGACGGCTAAGCCAAGGAAGATCTGATCCGGTTAAAATAGATCAAACTAGATCGCAGACAAGCCACGGTAGAATTGATCAAAGTACTYGCAAGCAACCCGTGTAAGTTTTCATTAGCTTAAAATCACTTCTTAGAATGTACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16386</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>67861</contig_pos>
        <strand>+</strand>
        <context>AGGCGACGGC[A/T]AAGCCAAGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTACTATATTTTCAGGAAAAGCAGCTCATATTGCTCCAAGGCGACGGC</left_flank>
        <right_flank>AAGCCAAGGAAGATCTGATCCGGTTAAAATAGATCAAACTAGATCGCAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATAATTGACCTCAAACTTAACAGTGCGGGGACCCTTTTTCTACACTCAAATTTGTGAGAAAAGTGTAAGGAAAAAGTACAAGTAGAACGGAAAAAGCGGAAGGAAAAATAAATCAATCAATGAAAAGTTGATAACACCGAAAACACCTGCCCTATGAAAAGAGATGCTTACTCAACAAAAGGATTCTCGCTCTGTCATACACTTCCGCAGGAAGGAGCCCTCTCAATATTATTGGGTATTCGCCCCTCCTCGATTGTCATGGTAACCAAAGGGACTCGAGGTGCTGGCTAGTGTTCCCCTCCCTCGTCACGCCCGCCCGTCCGTCTTCCGCAAGGGCCTCAATTCATTTCCGTGAGCTACTGCATACCTCTTCAACCTACTACCTTATTTCTATTGAGCAGCATGTCTCTGTCTATAAAAGGTAGATGTTTTCTTTGATTATATGATTTTTACTATATTTTCAGGAAAAGCAGCTCATATTGCTCCAAGGCGACGGCTAAGCCAAGGAAGATCTGATCCGGTTAAAATAGATCAAACTAGATCGCAGACAAGCCACGGTAGAATTGATCAAAGTACTTGCAAGCAACCCGTGTAAGTTTTCATTAGCTTAAAATCACTTCTTAGAATGTACGGAATAAACAAGCAACTTTTTTGCAGCCATAATGCTACCGACCATGAAGCCAATGAGATTTCCAATCTTGCTGACCAATATGCGCAAAGTCTTCAGCAACAAATACAACTTTTGCAGATCGAAAACACTTTTTTGTAAGTGCAATAAAAACAACCAGAAATCAGAGTGGGAAGATTTTTAGAAAACAACAATCCCAGAAGGAGGAAGAAGCAGCAGCAGGGGAAAGGATTAGGCAGCAAGAGCTAGAGGAAGAGCGGTATCGGGAGGAACAGTTTCAAAGAGAACGGGATAGGGAACGGGAGATTCACGTTCGCGAAATGGAAGAAATGCAACAACGGCGCTCGTCAACAGCATCACAGAGAGATCA</canonical>
            <polymorphic>AAATAATTGACCTCAAACTTAACAGTGCGGGGACCCTTTTTCTACACTCAAATTTGTGAGAAAAGTGTAAGGAAAAAGTACAAGTAGAACGGAAAAAGCGGAAGGAAAAATAAATCAATCAATGAAAAGTTGATAACACCGAAAACACCTGCCCTATGAAAAGAGATGCTTACTCAACAAAAGGATTCTCGCTCTGTCATACACTTCCGCAGGAAGGAGCCCTCTCAATATTATTGGGTATTCGCCCCTCCTCGATTGTCATGGTAACCAAAGGGACTCGAGGTGCTGGCTAGTGTTCCCCTCCCTCGTCACGCCCGCCCGTCCGTCTTCCGCAAGGGCCTCAATTCATTTCCGTGAGCTACTGCATACCTCTTCAACCTACTACCTTATTTCTATTGAGCAGCATGTCTCTGTCTATAAAAGGTAGATGTTTTCTTTGATTATATGATTTTTACTATATTTTCAGGAAAAGCAGCTCATATTGCTCCAAGGCGACGGCWAAGCCAAGGAAGATCTGATCCGGTTAAAATAGATCAAACTAGATCGCAGACAAGCCACGGTAGAATTGATCAAAGTACTTGCAAGCAACCCGTGTAAGTTTTCATTAGCTTAAAATCACTTCTTAGAATGTACGGAATAAACAAGCAACTTTTTTGCAGCCATAATGCTACCGACCATGAAGCCAATGAGATTTCCAATCTTGCTGACCAATATGCGCAAAGTCTTCAGCAACAAATACAACTTTTGCAGATCGAAAACACTTTTTTGTAAGTGCAATAAAAACAACCAGAAATCAGAGTGGGAAGATTTTTAGAAAACAACAATCCCAGAAGGAGGAAGAAGCAGCAGCAGGGGAAAGGATTAGGCAGCAAGAGCTAGAGGAAGAGCGGTATCGGGAGGAACAGTTTCAAAGAGAACGGGATAGGGAACGGGAGATTCACGTTCGCGAAATGGAAGAAATGCAACAACGGCGCTCGTCAACAGCATCACAGAGAGATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCTNAGC</site>
                <isoschizomers>
                    <enzyme>BlpI</enzyme>
                    <enzyme>Bpu1102I</enzyme>
                    <enzyme>Bsp1720I</enzyme>
                    <enzyme>CelII</enzyme>
                    <enzyme>EspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>499 378 123</canonical_bands>
                <polymorphic_bands>622 378</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>219 193 125 117 70 54 51 51 49 23 23 20 5</canonical_bands>
                <polymorphic_bands>219 193 125 117 70 54 51 51 49 28 23 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTATTTCTATTGAGCAGCATGT</pcr_primer_p1>
		<pcr_primer_p2>CCGTACATTCTAAGAAGTGATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTATTTCTATTGAGCAGCATGTCTCTGTCTATAAAAGGTAGATGTTTTCTTTGATTATATGATTTTTACTATATTTTCAGGAAAAGCAGCTCATATTGCTCCAAGGCGACGGCTAAGCCAAGGAAGATCTGATCCGGTTAAAATAGATCAAACTAGATCGCAGACAAGCCACGGTAGAATTGATCAAAGTACTTGCAAGCAACCCGTGTAAGTTTTCATTAGCTTAAAATCACTTCTTAGAATGTACGG</canonical_amplicon>
		<polymorphic_amplicon>CTTATTTCTATTGAGCAGCATGTCTCTGTCTATAAAAGGTAGATGTTTTCTTTGATTATATGATTTTTACTATATTTTCAGGAAAAGCAGCTCATATTGCTCCAAGGCGACGGCWAAGCCAAGGAAGATCTGATCCGGTTAAAATAGATCAAACTAGATCGCAGACAAGCCACGGTAGAATTGATCAAAGTACTTGCAAGCAACCCGTGTAAGTTTTCATTAGCTTAAAATCACTTCTTAGAATGTACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16387</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>67807</contig_pos>
        <strand>+</strand>
        <context>TTTGATTATA[C/T]GATTTTTACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGAGCAGCATGTCTCTGTCTATAAAAGGTAGATGTTTTCTTTGATTATA</left_flank>
        <right_flank>GATTTTTACTATATTTTCAGGAAAAGCAGCTCATATTGCTCCAAGGCGAC</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATCAGAAATTTGTTGTCAGTTGACACATTTTTGAAACATTTCACAGGAATTGAAATAATTGACCTCAAACTTAACAGTGCGGGGACCCTTTTTCTACACTCAAATTTGTGAGAAAAGTGTAAGGAAAAAGTACAAGTAGAACGGAAAAAGCGGAAGGAAAAATAAATCAATCAATGAAAAGTTGATAACACCGAAAACACCTGCCCTATGAAAAGAGATGCTTACTCAACAAAAGGATTCTCGCTCTGTCATACACTTCCGCAGGAAGGAGCCCTCTCAATATTATTGGGTATTCGCCCCTCCTCGATTGTCATGGTAACCAAAGGGACTCGAGGTGCTGGCTAGTGTTCCCCTCCCTCGTCACGCCCGCCCGTCCGTCTTCCGCAAGGGCCTCAATTCATTTCCGTGAGCTACTGCATACCTCTTCAACCTACTACCTTATTTCTATTGAGCAGCATGTCTCTGTCTATAAAAGGTAGATGTTTTCTTTGATTATATGATTTTTACTATATTTTCAGGAAAAGCAGCTCATATTGCTCCAAGGCGACGGCTAAGCCAAGGAAGATCTGATCCGGTTAAAATAGATCAAACTAGATCGCAGACAAGCCACGGTAGAATTGATCAAAGTACTTGCAAGCAACCCGTGTAAGTTTTCATTAGCTTAAAATCACTTCTTAGAATGTACGGAATAAACAAGCAACTTTTTTGCAGCCATAATGCTACCGACCATGAAGCCAATGAGATTTCCAATCTTGCTGACCAATATGCGCAAAGTCTTCAGCAACAAATACAACTTTTGCAGATCGAAAACACTTTTTTGTAAGTGCAATAAAAACAACCAGAAATCAGAGTGGGAAGATTTTTAGAAAACAACAATCCCAGAAGGAGGAAGAAGCAGCAGCAGGGGAAAGGATTAGGCAGCAAGAGCTAGAGGAAGAGCGGTATCGGGAGGAACAGTTTCAAAGAGAACGGGATAGGGAACGGGAGATTCACGTTCG</canonical>
            <polymorphic>ATATCAGAAATTTGTTGTCAGTTGACACATTTTTGAAACATTTCACAGGAATTGAAATAATTGACCTCAAACTTAACAGTGCGGGGACCCTTTTTCTACACTCAAATTTGTGAGAAAAGTGTAAGGAAAAAGTACAAGTAGAACGGAAAAAGCGGAAGGAAAAATAAATCAATCAATGAAAAGTTGATAACACCGAAAACACCTGCCCTATGAAAAGAGATGCTTACTCAACAAAAGGATTCTCGCTCTGTCATACACTTCCGCAGGAAGGAGCCCTCTCAATATTATTGGGTATTCGCCCCTCCTCGATTGTCATGGTAACCAAAGGGACTCGAGGTGCTGGCTAGTGTTCCCCTCCCTCGTCACGCCCGCCCGTCCGTCTTCCGCAAGGGCCTCAATTCATTTCCGTGAGCTACTGCATACCTCTTCAACCTACTACCTTATTTCTATTGAGCAGCATGTCTCTGTCTATAAAAGGTAGATGTTTTCTTTGATTATAYGATTTTTACTATATTTTCAGGAAAAGCAGCTCATATTGCTCCAAGGCGACGGCTAAGCCAAGGAAGATCTGATCCGGTTAAAATAGATCAAACTAGATCGCAGACAAGCCACGGTAGAATTGATCAAAGTACTTGCAAGCAACCCGTGTAAGTTTTCATTAGCTTAAAATCACTTCTTAGAATGTACGGAATAAACAAGCAACTTTTTTGCAGCCATAATGCTACCGACCATGAAGCCAATGAGATTTCCAATCTTGCTGACCAATATGCGCAAAGTCTTCAGCAACAAATACAACTTTTGCAGATCGAAAACACTTTTTTGTAAGTGCAATAAAAACAACCAGAAATCAGAGTGGGAAGATTTTTAGAAAACAACAATCCCAGAAGGAGGAAGAAGCAGCAGCAGGGGAAAGGATTAGGCAGCAAGAGCTAGAGGAAGAGCGGTATCGGGAGGAACAGTTTCAAAGAGAACGGGATAGGGAACGGGAGATTCACGTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTATTTCTATTGAGCAGCATGT</pcr_primer_p1>
		<pcr_primer_p2>CCGTACATTCTAAGAAGTGATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTATTTCTATTGAGCAGCATGTCTCTGTCTATAAAAGGTAGATGTTTTCTTTGATTATATGATTTTTACTATATTTTCAGGAAAAGCAGCTCATATTGCTCCAAGGCGACGGCTAAGCCAAGGAAGATCTGATCCGGTTAAAATAGATCAAACTAGATCGCAGACAAGCCACGGTAGAATTGATCAAAGTACTTGCAAGCAACCCGTGTAAGTTTTCATTAGCTTAAAATCACTTCTTAGAATGTACGG</canonical_amplicon>
		<polymorphic_amplicon>CTTATTTCTATTGAGCAGCATGTCTCTGTCTATAAAAGGTAGATGTTTTCTTTGATTATAYGATTTTTACTATATTTTCAGGAAAAGCAGCTCATATTGCTCCAAGGCGACGGCTAAGCCAAGGAAGATCTGATCCGGTTAAAATAGATCAAACTAGATCGCAGACAAGCCACGGTAGAATTGATCAAAGTACTTGCAAGCAACCCGTGTAAGTTTTCATTAGCTTAAAATCACTTCTTAGAATGTACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16388</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>97236</contig_pos>
        <strand>+</strand>
        <context>TTTCAAAAAA[A/C]CCCTCTCTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCTAAACCGCCGGATGTGGGATTAGCGCACGTCTAAGATGTTTCAAAAAA</left_flank>
        <right_flank>CCCTCTCTCAAAAAAAGGACCAATTACGTGCCATCCGTACAAAACTGCCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTCGAAAAAATTGTGCATACCAAATCTTTCTTCATCTTTTGAAATAGTTGGAGTTTGAGCATTGGAAGTAGACATCTGAAAATCAGTATAGTCTCCTATTCGTATCATGAAATGGTCTCTTTGGATAGAAGAATGAAAAAACAATAATAAAAATATGTAGGAGGAAATCTAAAACTCGATACGATATAAGGAAATGAAAGAGAAGCACGCACATTACGCACCTGCCAAGAAAGAAGCGGAGATTAGAACGTCGGACTGAGGAAATAGGGCATTTTGGGATGGAACGTGTATTAGAGTAATTGGAAAATTGATATAGTTTTAAGTGTGGAAGTTTTGACTCACGAAACACTTTGATCGATTAAAAAATTCAATAAAAAGAAATCAGGTGACAGTCGGAAAATATGAAGCAACGATTCGTATCTAACAATGTCGCAATATCCTTTTTCCCTAAACCGCCGGATGTGGGATTAGCGCACGTCTAAGATGTTTCAAAAAACCCCTCTCTCAAAAAAAGGACCAATTACGTGCCATCCGTACAAAACTGCCAGCTGCTCGCTTTGTTACGCTCTTATCTTAATCCCATGATGGGCCTTTTTTGAAACCGTTTCTGCCGAACAATTAGATAGCCTAATTATTGGATCGAGCTTATCTGATCCTATCTGATTCCAGTGGCGTGGGTAAATGCCTAAAAAAGAGGGCAGATGTTTGCAAGGGAAACAAGAGGTGGTTTATTTGATTCGAATGTAAAACCTATAACAAAATTTCAGAAGCAAATTCGCAACGAAAAACAATTTAGTAAAATATTGGCAATCAAATACTCAATTCTTCGGATTTCACGACAGTTTGAAAGCTTTGTTTCCAAATGTCTCGCCTCCATTTTTTCCGTGAACAGAGTACATTTCACGTTCTTCCAACTGCCGTTTTTCCAGCTAAAAAACTCATGTTCGACCAGAAATGCGGTTACAGTTTGTATTTCTCTTGGACAATTTTCGAATGC</canonical>
            <polymorphic>TGTTTCGAAAAAATTGTGCATACCAAATCTTTCTTCATCTTTTGAAATAGTTGGAGTTTGAGCATTGGAAGTAGACATCTGAAAATCAGTATAGTCTCCTATTCGTATCATGAAATGGTCTCTTTGGATAGAAGAATGAAAAAACAATAATAAAAATATGTAGGAGGAAATCTAAAACTCGATACGATATAAGGAAATGAAAGAGAAGCACGCACATTACGCACCTGCCAAGAAAGAAGCGGAGATTAGAACGTCGGACTGAGGAAATAGGGCATTTTGGGATGGAACGTGTATTAGAGTAATTGGAAAATTGATATAGTTTTAAGTGTGGAAGTTTTGACTCACGAAACACTTTGATCGATTAAAAAATTCAATAAAAAGAAATCAGGTGACAGTCGGAAAATATGAAGCAACGATTCGTATCTAACAATGTCGCAATATCCTTTTTCCCTAAACCGCCGGATGTGGGATTAGCGCACGTCTAAGATGTTTCAAAAAAMCCCTCTCTCAAAAAAAGGACCAATTACGTGCCATCCGTACAAAACTGCCAGCTGCTCGCTTTGTTACGCTCTTATCTTAATCCCATGATGGGCCTTTTTTGAAACCGTTTCTGCCGAACAATTAGATAGCCTAATTATTGGATCGAGCTTATCTGATCCTATCTGATTCCAGTGGCGTGGGTAAATGCCTAAAAAAGAGGGCAGATGTTTGCAAGGGAAACAAGAGGTGGTTTATTTGATTCGAATGTAAAACCTATAACAAAATTTCAGAAGCAAATTCGCAACGAAAAACAATTTAGTAAAATATTGGCAATCAAATACTCAATTCTTCGGATTTCACGACAGTTTGAAAGCTTTGTTTCCAAATGTCTCGCCTCCATTTTTTCCGTGAACAGAGTACATTTCACGTTCTTCCAACTGCCGTTTTTCCAGCTAAAAAACTCATGTTCGACCAGAAATGCGGTTACAGTTTGTATTTCTCTTGGACAATTTTCGAATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCTAACAATGTCGCAATATCC</pcr_primer_p1>
		<pcr_primer_p2>TGGAATCAGATAGGATCAGATAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATCTAACAATGTCGCAATATCCTTTTTCCCTAAACCGCCGGATGTGGGATTAGCGCACGTCTAAGATGTTTCAAAAAACCCCTCTCTCAAAAAAAGGACCAATTACGTGCCATCCGTACAAAACTGCCAGCTGCTCGCTTTGTTACGCTCTTATCTTAATCCCATGATGGGCCTTTTTTGAAACCGTTTCTGCCGAACAATTAGATAGCCTAATTATTGGATCGAGCTTATCTGATCCTATCTGATTCCA</canonical_amplicon>
		<polymorphic_amplicon>TATCTAACAATGTCGCAATATCCTTTTTCCCTAAACCGCCGGATGTGGGATTAGCGCACGTCTAAGATGTTTCAAAAAAMCCCTCTCTCAAAAAAAGGACCAATTACGTGCCATCCGTACAAAACTGCCAGCTGCTCGCTTTGTTACGCTCTTATCTTAATCCCATGATGGGCCTTTTTTGAAACCGTTTCTGCCGAACAATTAGATAGCCTAATTATTGGATCGAGCTTATCTGATCCTATCTGATTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16389</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>157528</contig_pos>
        <strand>+</strand>
        <context>GATTTCGTTG[A/G]AAAAAAAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGTGTGAAAGGAGAAAGAGGTGTGAAATGGAAAAATTAGATTTCGTTG</left_flank>
        <right_flank>AAAAAAAAACTGCCGTCAAAGGATAGTTGTTCAGAATAAAATATAAGTCT</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGATCCAAAATTTTTTGCAAGGTTACCTCTTCGAAAACATTCTCAACTCGTTTTCCTCCATTTCTTGTCTGAAGTCGGTGCCAGGTGAATCGAATGGCTCGTTTCTGTATTTTGCTCAAGCGTGTATCATAGTTGTAATGTTTGAGGGCAGGTGTTGGCGGTGCAGCTGAAATTTCCATTAATATAATTTTATTTCAACTAAACAGGTTACCTTGATGTTGTAAATCATAAATGCTCGGCATACTGCTACTCTTTCTCGCCGTTTTTCCATCTTCCAGAAAGTTCGAGTCCACGGAGCCACAGCCAGTCTTCTTTCGAACGGTCCGGCTAGAACTCACGCTTCGCATTATGAAAAATTGATATGATAGCTACAACTGTTGGGCAATGCACAATGGGGGTTATAGACCCCTGGAGGTTAGATATTCATGCGAGATGTTTTGTGCTGCTTTTGTGTGAAAGGAGAAAGAGGTGTGAAATGGAAAAATTAGATTTCGTTGAAAAAAAAAACTGCCGTCAAAGGATAGTTGTTCAGAATAAAATATAAGTCTGGAGTTATGAACTAGAAAGAAAGAAAACTAAAAAGGTGACGCAAGACATATCTTGTTTTAGAGATGCTGAAATGACGTAAAACTGCAAAAATACCTTCTTTTCGGTCTGAACTGGGAAGAATCTCCAGCACGATCTTCTCCGTTTGCACTTGATTCTTTTCGCGCCTGGAAAAATAAGAAAAACTTTTTTTTGTTTTACTGCAAACTTTTCAACCACATCTATAACTAGTCAGGAATGTTCAGAATGACCTATACTGAATTTCGGGAAATTCGAGAAATCCAATTTTCAAAATTTCGGAGTTTCCCGATTTTGAAAAAGTCGGGGAATTCCAATTTGGAAAAATTCATAATTTTGAAAGTTTCAAAACTGTTCAATATTCAAATTTTAAAATAGAAATCCTATTTTTCCTATTAAAAAGAGCCAAAAAATTATGACAAATTGACAAAAAA</canonical>
            <polymorphic>CTTGATCCAAAATTTTTTGCAAGGTTACCTCTTCGAAAACATTCTCAACTCGTTTTCCTCCATTTCTTGTCTGAAGTCGGTGCCAGGTGAATCGAATGGCTCGTTTCTGTATTTTGCTCAAGCGTGTATCATAGTTGTAATGTTTGAGGGCAGGTGTTGGCGGTGCAGCTGAAATTTCCATTAATATAATTTTATTTCAACTAAACAGGTTACCTTGATGTTGTAAATCATAAATGCTCGGCATACTGCTACTCTTTCTCGCCGTTTTTCCATCTTCCAGAAAGTTCGAGTCCACGGAGCCACAGCCAGTCTTCTTTCGAACGGTCCGGCTAGAACTCACGCTTCGCATTATGAAAAATTGATATGATAGCTACAACTGTTGGGCAATGCACAATGGGGGTTATAGACCCCTGGAGGTTAGATATTCATGCGAGATGTTTTGTGCTGCTTTTGTGTGAAAGGAGAAAGAGGTGTGAAATGGAAAAATTAGATTTCGTTGRAAAAAAAAACTGCCGTCAAAGGATAGTTGTTCAGAATAAAATATAAGTCTGGAGTTATGAACTAGAAAGAAAGAAAACTAAAAAGGTGACGCAAGACATATCTTGTTTTAGAGATGCTGAAATGACGTAAAACTGCAAAAATACCTTCTTTTCGGTCTGAACTGGGAAGAATCTCCAGCACGATCTTCTCCGTTTGCACTTGATTCTTTTCGCGCCTGGAAAAATAAGAAAAACTTTTTTTTGTTTTACTGCAAACTTTTCAACCACATCTATAACTAGTCAGGAATGTTCAGAATGACCTATACTGAATTTCGGGAAATTCGAGAAATCCAATTTTCAAAATTTCGGAGTTTCCCGATTTTGAAAAAGTCGGGGAATTCCAATTTGGAAAAATTCATAATTTTGAAAGTTTCAAAACTGTTCAATATTCAAATTTTAAAATAGAAATCCTATTTTTCCTATTAAAAAGAGCCAAAAAATTATGACAAATTGACAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATAGACCCCTGGAGGTTAGAT</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAGGTATTTTTGCAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATAGACCCCTGGAGGTTAGATATTCATGCGAGATGTTTTGTGCTGCTTTTGTGTGAAAGGAGAAAGAGGTGTGAAATGGAAAAATTAGATTTCGTTGAAAAAAAAAACTGCCGTCAAAGGATAGTTGTTCAGAATAAAATATAAGTCTGGAGTTATGAACTAGAAAGAAAGAAAACTAAAAAGGTGACGCAAGACATATCTTGTTTTAGAGATGCTGAAATGACGTAAAACTGCAAAAATACCTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>TATAGACCCCTGGAGGTTAGATATTCATGCGAGATGTTTTGTGCTGCTTTTGTGTGAAAGGAGAAAGAGGTGTGAAATGGAAAAATTAGATTTCGTTGRAAAAAAAAACTGCCGTCAAAGGATAGTTGTTCAGAATAAAATATAAGTCTGGAGTTATGAACTAGAAAGAAAGAAAACTAAAAAGGTGACGCAAGACATATCTTGTTTTAGAGATGCTGAAATGACGTAAAACTGCAAAAATACCTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16390</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>157627</contig_pos>
        <strand>+</strand>
        <context>ACGCAAGACA[A/T]ATCTTGTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGGAGTTATGAACTAGAAAGAAAGAAAACTAAAAAGGTGACGCAAGACA</left_flank>
        <right_flank>ATCTTGTTTTAGAGATGCTGAAATGACGTAAAACTGCAAAAATACCTTCT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGTTTCTGTATTTTGCTCAAGCGTGTATCATAGTTGTAATGTTTGAGGGCAGGTGTTGGCGGTGCAGCTGAAATTTCCATTAATATAATTTTATTTCAACTAAACAGGTTACCTTGATGTTGTAAATCATAAATGCTCGGCATACTGCTACTCTTTCTCGCCGTTTTTCCATCTTCCAGAAAGTTCGAGTCCACGGAGCCACAGCCAGTCTTCTTTCGAACGGTCCGGCTAGAACTCACGCTTCGCATTATGAAAAATTGATATGATAGCTACAACTGTTGGGCAATGCACAATGGGGGTTATAGACCCCTGGAGGTTAGATATTCATGCGAGATGTTTTGTGCTGCTTTTGTGTGAAAGGAGAAAGAGGTGTGAAATGGAAAAATTAGATTTCGTTGAAAAAAAAAACTGCCGTCAAAGGATAGTTGTTCAGAATAAAATATAAGTCTGGAGTTATGAACTAGAAAGAAAGAAAACTAAAAAGGTGACGCAAGACATATCTTGTTTTAGAGATGCTGAAATGACGTAAAACTGCAAAAATACCTTCTTTTCGGTCTGAACTGGGAAGAATCTCCAGCACGATCTTCTCCGTTTGCACTTGATTCTTTTCGCGCCTGGAAAAATAAGAAAAACTTTTTTTTGTTTTACTGCAAACTTTTCAACCACATCTATAACTAGTCAGGAATGTTCAGAATGACCTATACTGAATTTCGGGAAATTCGAGAAATCCAATTTTCAAAATTTCGGAGTTTCCCGATTTTGAAAAAGTCGGGGAATTCCAATTTGGAAAAATTCATAATTTTGAAAGTTTCAAAACTGTTCAATATTCAAATTTTAAAATAGAAATCCTATTTTTCCTATTAAAAAGAGCCAAAAAATTATGACAAATTGACAAAAAAATTTCGGAACGAACAAAAAATTCAAGTGAATCTTCATAAGACCCGGCCGGAATATCATTCCAAACGTTTTCGAAATTTCCTGAATTCCAATTTTGGTTT</canonical>
            <polymorphic>CTCGTTTCTGTATTTTGCTCAAGCGTGTATCATAGTTGTAATGTTTGAGGGCAGGTGTTGGCGGTGCAGCTGAAATTTCCATTAATATAATTTTATTTCAACTAAACAGGTTACCTTGATGTTGTAAATCATAAATGCTCGGCATACTGCTACTCTTTCTCGCCGTTTTTCCATCTTCCAGAAAGTTCGAGTCCACGGAGCCACAGCCAGTCTTCTTTCGAACGGTCCGGCTAGAACTCACGCTTCGCATTATGAAAAATTGATATGATAGCTACAACTGTTGGGCAATGCACAATGGGGGTTATAGACCCCTGGAGGTTAGATATTCATGCGAGATGTTTTGTGCTGCTTTTGTGTGAAAGGAGAAAGAGGTGTGAAATGGAAAAATTAGATTTCGTTGAAAAAAAAAACTGCCGTCAAAGGATAGTTGTTCAGAATAAAATATAAGTCTGGAGTTATGAACTAGAAAGAAAGAAAACTAAAAAGGTGACGCAAGACAWATCTTGTTTTAGAGATGCTGAAATGACGTAAAACTGCAAAAATACCTTCTTTTCGGTCTGAACTGGGAAGAATCTCCAGCACGATCTTCTCCGTTTGCACTTGATTCTTTTCGCGCCTGGAAAAATAAGAAAAACTTTTTTTTGTTTTACTGCAAACTTTTCAACCACATCTATAACTAGTCAGGAATGTTCAGAATGACCTATACTGAATTTCGGGAAATTCGAGAAATCCAATTTTCAAAATTTCGGAGTTTCCCGATTTTGAAAAAGTCGGGGAATTCCAATTTGGAAAAATTCATAATTTTGAAAGTTTCAAAACTGTTCAATATTCAAATTTTAAAATAGAAATCCTATTTTTCCTATTAAAAAGAGCCAAAAAATTATGACAAATTGACAAAAAAATTTCGGAACGAACAAAAAATTCAAGTGAATCTTCATAAGACCCGGCCGGAATATCATTCCAAACGTTTTCGAAATTTCCTGAATTCCAATTTTGGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGACCCCTGGAGGTTAGATA</pcr_primer_p1>
		<pcr_primer_p2>GAAAAGAAGGTATTTTTGCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGACCCCTGGAGGTTAGATATTCATGCGAGATGTTTTGTGCTGCTTTTGTGTGAAAGGAGAAAGAGGTGTGAAATGGAAAAATTAGATTTCGTTGAAAAAAAAAACTGCCGTCAAAGGATAGTTGTTCAGAATAAAATATAAGTCTGGAGTTATGAACTAGAAAGAAAGAAAACTAAAAAGGTGACGCAAGACATATCTTGTTTTAGAGATGCTGAAATGACGTAAAACTGCAAAAATACCTTCTTTTC</canonical_amplicon>
		<polymorphic_amplicon>TAGACCCCTGGAGGTTAGATATTCATGCGAGATGTTTTGTGCTGCTTTTGTGTGAAAGGAGAAAGAGGTGTGAAATGGAAAAATTAGATTTCGTTGAAAAAAAAAACTGCCGTCAAAGGATAGTTGTTCAGAATAAAATATAAGTCTGGAGTTATGAACTAGAAAGAAAGAAAACTAAAAAGGTGACGCAAGACAWATCTTGTTTTAGAGATGCTGAAATGACGTAAAACTGCAAAAATACCTTCTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16430</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>162362</contig_pos>
        <strand>+</strand>
        <context>GTTACRATAG[A/G]GGTGGAGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAGAGTTTTCTGATGTTCCCTCCCCATCTCATTTTGGGGTTACGATAG</left_flank>
        <right_flank>GGTGGAGAATACATAAAAACAAAGGTTTTTTGTTTGTTGGGAAGTGCAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGGAGTGAGAAACAAATAAAAGGAATGAGCAAGTACTAAAAAAGTGGGAGCCGCCCGAAGCATGACAAGAAGAAGGCTCATAGAATGGAGTTCGACGGGGACTCGCCTTCAAATCGCTAATTTTATTCGAATTTGCAAAAACAAAGAGAAGAGACAAGAAGAAGGACAAGAGAAACAAATGAAGTCATTTCTTCTGTCTCTTGACGCGGGACCACAACTAGCGACTCGTGAGGAATCGGTTTCTCCTTCCTATTTTCTTCTCCGCCGCCTGTGTGCGCATCTCAACACCACCATCACTAACCATCCAACACCATCATTTGTTTTTTAACGCGACGAAAATTCCATCGGCATCTTGGACTCCGCCTTTTTTCCCAAAAAAAAGTGGCATGTAATTAAGAGAAAAGCAAAGGGAAATGCGGGAAGGACACTGGAATCAATCTCGGGAGAAGAAGAGTTTTCTGATGTTCCCTCCCCATCTCATTTTGGGGTTACGATAGGGGTGGAGAATACATAAAAACAAAGGTTTTTTGTTTGTTGGGAAGTGCAGATAAGATCCAAACATTTTCATACCAGCCTTTATAAATCTAGTATCCATATTTGAAAAATCGGGGTCCGGATTTCTCATATTAAAAAATGGTACCCAGTTTATTTTTCAAACTTCGTATTTGGCAAAAATTTCGCGGATATTTTTCATTGATCTCTGAATTTTTTTTTTGACAAGACAAAAATTCTGGAAATCCAAGTCGAAACGGGCTAGGTTCGAGCCGAAACGAGGAATTTCAAAGAGAAACCCGGCCCGTCACAAGTATGGTATAAATAGTGCTTACTGTGATAATTCGAATTTCCAGGTAAAAAAATGTTATTAGAAATTACAACATACAGACGTATTTAAACTTCTCTCTTGTCTTTCTAGTTTGCCAGTTTTCTAGTTCCACCCAGATTAAAAATTCAACAGTCAATTTGAAAAACTAAAACAATAAGAACCCCATTAACTATTC</canonical>
            <polymorphic>GGTGGAGTGAGAAACAAATAAAAGGAATGAGCAAGTACTAAAAAAGTGGGAGCCGCCCGAAGCATGACAAGAAGAAGGCTCATAGAATGGAGTTCGACGGGGACTCGCCTTCAAATCGCTAATTTTATTCGAATTTGCAAAAACAAAGAGAAGAGACAAGAAGAAGGACAAGAGAAACAAATGAAGTCATTTCTTCTGTCTCTTGACGCGGGACCACAACTAGCGACTCGTGAGGAATCGGTTTCTCCTTCCTATTTTCTTCTCCGCCGCCTGTGTGCGCATCTCAACACCACCATCACTAACCATCCAACACCATCATTTGTTTTTTAACGCGACGAAAATTCCATCGGCATCTTGGACTCCGCCTTTTTTCCCAAAAAAAAGTGGCATGTAATTAAGAGAAAAGCAAAGGGAAATGCGGGAAGGACACTGGAATCAATCTCGGGAGAAGAAGAGTTTTCTGATGTTCCCTCCCCATCTCATTTTGGGGTTACGATAGRGGTGGAGAATACATAAAAACAAAGGTTTTTTGTTTGTTGGGAAGTGCAGATAAGATCCAAACATTTTCATACCAGCCTTTATAAATCTAGTATCCATATTTGAAAAATCGGGGTCCGGATTTCTCATATTAAAAAATGGTACCCAGTTTATTTTTCAAACTTCGTATTTGGCAAAAATTTCGCGGATATTTTTCATTGATCTCTGAATTTTTTTTTTGACAAGACAAAAATTCTGGAAATCCAAGTCGAAACGGGCTAGGTTCGAGCCGAAACGAGGAATTTCAAAGAGAAACCCGGCCCGTCACAAGTATGGTATAAATAGTGCTTACTGTGATAATTCGAATTTCCAGGTAAAAAAATGTTATTAGAAATTACAACATACAGACGTATTTAAACTTCTCTCTTGTCTTTCTAGTTTGCCAGTTTTCTAGTTCCACCCAGATTAAAAATTCAACAGTCAATTTGAAAAACTAAAACAATAAGAACCCCATTAACTATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGGACACTGGAATCAATCT</pcr_primer_p1>
		<pcr_primer_p2>CCAAATACGAAGTTTGAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGGACACTGGAATCAATCTCGGGAGAAGAAGAGTTTTCTGATGTTCCCTCCCCATCTCATTTTGGGGTTACGATAGGGGTGGAGAATACATAAAAACAAAGGTTTTTTGTTTGTTGGGAAGTGCAGATAAGATCCAAACATTTTCATACCAGCCTTTATAAATCTAGTATCCATATTTGAAAAATCGGGGTCCGGATTTCTCATATTAAAAAATGGTACCCAGTTTATTTTTCAAACTTCGTATTTGG</canonical_amplicon>
		<polymorphic_amplicon>GAAGGACACTGGAATCAATCTCGGGAGAAGAAGAGTTTTCTGATGTTCCCTCCCCATCTCATTTTGGGGTTACGATAGRGGTGGAGAATACATAAAAACAAAGGTTTTTTGTTTGTTGGGAAGTGCAGATAAGATCCAAACATTTTCATACCAGCCTTTATAAATCTAGTATCCATATTTGAAAAATCGGGGTCCGGATTTCTCATATTAAAAAATGGTACCCAGTTTATTTTTCAAACTTCGTATTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16431</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>162357</contig_pos>
        <strand>+</strand>
        <context>TTGGGGTTAC[A/G]ATAGRGGTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAGAAGAAGAGTTTTCTGATGTTCCCTCCCCATCTCATTTTGGGGTTAC</left_flank>
        <right_flank>ATAGGGGTGGAGAATACATAAAAACAAAGGTTTTTTGTTTGTTGGGAAGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGAGGTGGAGTGAGAAACAAATAAAAGGAATGAGCAAGTACTAAAAAAGTGGGAGCCGCCCGAAGCATGACAAGAAGAAGGCTCATAGAATGGAGTTCGACGGGGACTCGCCTTCAAATCGCTAATTTTATTCGAATTTGCAAAAACAAAGAGAAGAGACAAGAAGAAGGACAAGAGAAACAAATGAAGTCATTTCTTCTGTCTCTTGACGCGGGACCACAACTAGCGACTCGTGAGGAATCGGTTTCTCCTTCCTATTTTCTTCTCCGCCGCCTGTGTGCGCATCTCAACACCACCATCACTAACCATCCAACACCATCATTTGTTTTTTAACGCGACGAAAATTCCATCGGCATCTTGGACTCCGCCTTTTTTCCCAAAAAAAAGTGGCATGTAATTAAGAGAAAAGCAAAGGGAAATGCGGGAAGGACACTGGAATCAATCTCGGGAGAAGAAGAGTTTTCTGATGTTCCCTCCCCATCTCATTTTGGGGTTACGATAGGGGTGGAGAATACATAAAAACAAAGGTTTTTTGTTTGTTGGGAAGTGCAGATAAGATCCAAACATTTTCATACCAGCCTTTATAAATCTAGTATCCATATTTGAAAAATCGGGGTCCGGATTTCTCATATTAAAAAATGGTACCCAGTTTATTTTTCAAACTTCGTATTTGGCAAAAATTTCGCGGATATTTTTCATTGATCTCTGAATTTTTTTTTTGACAAGACAAAAATTCTGGAAATCCAAGTCGAAACGGGCTAGGTTCGAGCCGAAACGAGGAATTTCAAAGAGAAACCCGGCCCGTCACAAGTATGGTATAAATAGTGCTTACTGTGATAATTCGAATTTCCAGGTAAAAAAATGTTATTAGAAATTACAACATACAGACGTATTTAAACTTCTCTCTTGTCTTTCTAGTTTGCCAGTTTTCTAGTTCCACCCAGATTAAAAATTCAACAGTCAATTTGAAAAACTAAAACAATAAGAACCCCATTAAC</canonical>
            <polymorphic>GAGGAGGTGGAGTGAGAAACAAATAAAAGGAATGAGCAAGTACTAAAAAAGTGGGAGCCGCCCGAAGCATGACAAGAAGAAGGCTCATAGAATGGAGTTCGACGGGGACTCGCCTTCAAATCGCTAATTTTATTCGAATTTGCAAAAACAAAGAGAAGAGACAAGAAGAAGGACAAGAGAAACAAATGAAGTCATTTCTTCTGTCTCTTGACGCGGGACCACAACTAGCGACTCGTGAGGAATCGGTTTCTCCTTCCTATTTTCTTCTCCGCCGCCTGTGTGCGCATCTCAACACCACCATCACTAACCATCCAACACCATCATTTGTTTTTTAACGCGACGAAAATTCCATCGGCATCTTGGACTCCGCCTTTTTTCCCAAAAAAAAGTGGCATGTAATTAAGAGAAAAGCAAAGGGAAATGCGGGAAGGACACTGGAATCAATCTCGGGAGAAGAAGAGTTTTCTGATGTTCCCTCCCCATCTCATTTTGGGGTTACRATAGGGGTGGAGAATACATAAAAACAAAGGTTTTTTGTTTGTTGGGAAGTGCAGATAAGATCCAAACATTTTCATACCAGCCTTTATAAATCTAGTATCCATATTTGAAAAATCGGGGTCCGGATTTCTCATATTAAAAAATGGTACCCAGTTTATTTTTCAAACTTCGTATTTGGCAAAAATTTCGCGGATATTTTTCATTGATCTCTGAATTTTTTTTTTGACAAGACAAAAATTCTGGAAATCCAAGTCGAAACGGGCTAGGTTCGAGCCGAAACGAGGAATTTCAAAGAGAAACCCGGCCCGTCACAAGTATGGTATAAATAGTGCTTACTGTGATAATTCGAATTTCCAGGTAAAAAAATGTTATTAGAAATTACAACATACAGACGTATTTAAACTTCTCTCTTGTCTTTCTAGTTTGCCAGTTTTCTAGTTCCACCCAGATTAAAAATTCAACAGTCAATTTGAAAAACTAAAACAATAAGAACCCCATTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGGACACTGGAATCAATCT</pcr_primer_p1>
		<pcr_primer_p2>CCAAATACGAAGTTTGAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGGACACTGGAATCAATCTCGGGAGAAGAAGAGTTTTCTGATGTTCCCTCCCCATCTCATTTTGGGGTTACGATAGGGGTGGAGAATACATAAAAACAAAGGTTTTTTGTTTGTTGGGAAGTGCAGATAAGATCCAAACATTTTCATACCAGCCTTTATAAATCTAGTATCCATATTTGAAAAATCGGGGTCCGGATTTCTCATATTAAAAAATGGTACCCAGTTTATTTTTCAAACTTCGTATTTGG</canonical_amplicon>
		<polymorphic_amplicon>GAAGGACACTGGAATCAATCTCGGGAGAAGAAGAGTTTTCTGATGTTCCCTCCCCATCTCATTTTGGGGTTACRATAGGGGTGGAGAATACATAAAAACAAAGGTTTTTTGTTTGTTGGGAAGTGCAGATAAGATCCAAACATTTTCATACCAGCCTTTATAAATCTAGTATCCATATTTGAAAAATCGGGGTCCGGATTTCTCATATTAAAAAATGGTACCCAGTTTATTTTTCAAACTTCGTATTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16432</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>184707</contig_pos>
        <strand>+</strand>
        <context>ATCGAGATGA[G/T]CCGAAAGAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATAAATAAAGCTTTTTGTTCCGAAAAAACTCACGCGTTAAATCGAGATGA</left_flank>
        <right_flank>CCGAAAGAAGGCAATTGTGTGCCTGTGTATGTTCCTTCACTCCGATTAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAGCAAGCCTTCTCATTAGGAGGTGGTTGCACTTTTTCCCTTTTTCTTATATTACTCTACAGCTCCAGACCGTTCTACGCCAAACGTCATATGCAAATCTTCTCTTCTGAAGATGTTTGCTTTTTTTCTATTGTATTTTTTTCTTTTTTTTTTCTGATGATTCTAACTTTCCAATCCAGCCAATACAGCAAATCTTTCAGACTAACCTCTGAAAAATGATCGCACTATTTCTTCTTGTTTGAGATGCGGCTGTAATCCTCTTCTCTAAAATTTTTAAATTTTTTTTCTTCTCTCCGACCATGTCTCTATTGTTTTTTCAAGATCCTAACAAATTAAACATCAATGCATATTCGGACATATATCAATTAATTGCATATTTGTGTCTCTTTTCCGTGTTAAAATCATTCATTCCCTTACTATTTTTGTATATTTTTCTCTATATTTTTCATAAATAAAGCTTTTTGTTCCGAAAAAACTCACGCGTTAAATCGAGATGATCCGAAAGAAGGCAATTGTGTGCCTGTGTATGTTCCTTCACTCCGATTAAGACGATGCGCGCGCACCCCCACACAACTATACTAGTCGGTTTCCCTGCTAAACAGAGCGCGGGGTGTGAAAGCGGAGTGTCGTTGCGTAAACGTGTCGACATTTGTTTATTAATGTTTTCTACGGAATTTATCGCGTTTCCCACTATTTTCTTTTAAATATTACCTCAAATAATTTTTTCCAGCACGAGAATGCCTAGAAAACGTGTAGCATTTCAAAAAGCGGACGGGAACGACCGGAGTTTTACAATTGCGTCGCTGGAATTTTGTTTATCTCAGCTGCGCAAAGCAGATCCGAACTTGGTAAAGAAAGCAATTGCATCGGGAGATGGACTTACTGAATCTAAAGGTGAGTATTACATTTTTAACTGATAAATGTTTTGAAAAATCGATGAATTAAGACGATGTGAGCACACGACTGTCCGAGGCGCATCGTTATGCCGTCCAGCAATG</canonical>
            <polymorphic>ATAAGCAAGCCTTCTCATTAGGAGGTGGTTGCACTTTTTCCCTTTTTCTTATATTACTCTACAGCTCCAGACCGTTCTACGCCAAACGTCATATGCAAATCTTCTCTTCTGAAGATGTTTGCTTTTTTTCTATTGTATTTTTTTCTTTTTTTTTTCTGATGATTCTAACTTTCCAATCCAGCCAATACAGCAAATCTTTCAGACTAACCTCTGAAAAATGATCGCACTATTTCTTCTTGTTTGAGATGCGGCTGTAATCCTCTTCTCTAAAATTTTTAAATTTTTTTTCTTCTCTCCGACCATGTCTCTATTGTTTTTTCAAGATCCTAACAAATTAAACATCAATGCATATTCGGACATATATCAATTAATTGCATATTTGTGTCTCTTTTCCGTGTTAAAATCATTCATTCCCTTACTATTTTTGTATATTTTTCTCTATATTTTTCATAAATAAAGCTTTTTGTTCCGAAAAAACTCACGCGTTAAATCGAGATGAKCCGAAAGAAGGCAATTGTGTGCCTGTGTATGTTCCTTCACTCCGATTAAGACGATGCGCGCGCACCCCCACACAACTATACTAGTCGGTTTCCCTGCTAAACAGAGCGCGGGGTGTGAAAGCGGAGTGTCGTTGCGTAAACGTGTCGACATTTGTTTATTAATGTTTTCTACGGAATTTATCGCGTTTCCCACTATTTTCTTTTAAATATTACCTCAAATAATTTTTTCCAGCACGAGAATGCCTAGAAAACGTGTAGCATTTCAAAAAGCGGACGGGAACGACCGGAGTTTTACAATTGCGTCGCTGGAATTTTGTTTATCTCAGCTGCGCAAAGCAGATCCGAACTTGGTAAAGAAAGCAATTGCATCGGGAGATGGACTTACTGAATCTAAAGGTGAGTATTACATTTTTAACTGATAAATGTTTTGAAAAATCGATGAATTAAGACGATGTGAGCACACGACTGTCCGAGGCGCATCGTTATGCCGTCCAGCAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>341 219 175 162 103</canonical_bands>
                <polymorphic_bands>516 219 162 103</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>300 128 115 110 85 58 47 44 41 32 29 11</canonical_bands>
                <polymorphic_bands>300 128 115 110 85 73 58 47 44 29 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTCATTCCCTTACTATTTTTG</pcr_primer_p1>
		<pcr_primer_p2>AACAAATGTCGACACGTTTAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CATTCATTCCCTTACTATTTTTGTATATTTTTCTCTATATTTTTCATAAATAAAGCTTTTTGTTCCGAAAAAACTCACGCGTTAAATCGAGATGATCCGAAAGAAGGCAATTGTGTGCCTGTGTATGTTCCTTCACTCCGATTAAGACGATGCGCGCGCACCCCCACACAACTATACTAGTCGGTTTCCCTGCTAAACAGAGCGCGGGGTGTGAAAGCGGAGTGTCGTTGCGTAAACGTGTCGACATTTGTT</canonical_amplicon>
		<polymorphic_amplicon>CATTCATTCCCTTACTATTTTTGTATATTTTTCTCTATATTTTTCATAAATAAAGCTTTTTGTTCCGAAAAAACTCACGCGTTAAATCGAGATGAKCCGAAAGAAGGCAATTGTGTGCCTGTGTATGTTCCTTCACTCCGATTAAGACGATGCGCGCGCACCCCCACACAACTATACTAGTCGGTTTCCCTGCTAAACAGAGCGCGGGGTGTGAAAGCGGAGTGTCGTTGCGTAAACGTGTCGACATTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16433</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>184907</contig_pos>
        <strand>+</strand>
        <context>CCACTATTTT[A/C]TTTTAAATAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTGTTTATTAATGTTTTCTACGGAATTTATCGCGTTTCCCACTATTTT</left_flank>
        <right_flank>TTTTAAATATTACCTCAAATAATTTTTTCCAGCACGAGAATGCCTAGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACTAACCTCTGAAAAATGATCGCACTATTTCTTCTTGTTTGAGATGCGGCTGTAATCCTCTTCTCTAAAATTTTTAAATTTTTTTTCTTCTCTCCGACCATGTCTCTATTGTTTTTTCAAGATCCTAACAAATTAAACATCAATGCATATTCGGACATATATCAATTAATTGCATATTTGTGTCTCTTTTCCGTGTTAAAATCATTCATTCCCTTACTATTTTTGTATATTTTTCTCTATATTTTTCATAAATAAAGCTTTTTGTTCCGAAAAAACTCACGCGTTAAATCGAGATGATCCGAAAGAAGGCAATTGTGTGCCTGTGTATGTTCCTTCACTCCGATTAAGACGATGCGCGCGCACCCCCACACAACTATACTAGTCGGTTTCCCTGCTAAACAGAGCGCGGGGTGTGAAAGCGGAGTGTCGTTGCGTAAACGTGTCGACATTTGTTTATTAATGTTTTCTACGGAATTTATCGCGTTTCCCACTATTTTCTTTTAAATATTACCTCAAATAATTTTTTCCAGCACGAGAATGCCTAGAAAACGTGTAGCATTTCAAAAAGCGGACGGGAACGACCGGAGTTTTACAATTGCGTCGCTGGAATTTTGTTTATCTCAGCTGCGCAAAGCAGATCCGAACTTGGTAAAGAAAGCAATTGCATCGGGAGATGGACTTACTGAATCTAAAGGTGAGTATTACATTTTTAACTGATAAATGTTTTGAAAAATCGATGAATTAAGACGATGTGAGCACACGACTGTCCGAGGCGCATCGTTATGCCGTCCAGCAATGTCTCGACAACTCGGAGTCACTAGCTCAGCTACATCATCAGCTCGTTCTTTGTGACAACGTCTTCGAGGTGAGAAGGAAACTGATAAAAAATATAGTAAAAAGGCCACGAGGCTGCGTACGCCACACAATTCCAAGAAAAACATTCTGAATTTCTTTTACAGCGCCTTCAAGCAACATTATACAGTTTTCAAGACAGTCTC</canonical>
            <polymorphic>AGACTAACCTCTGAAAAATGATCGCACTATTTCTTCTTGTTTGAGATGCGGCTGTAATCCTCTTCTCTAAAATTTTTAAATTTTTTTTCTTCTCTCCGACCATGTCTCTATTGTTTTTTCAAGATCCTAACAAATTAAACATCAATGCATATTCGGACATATATCAATTAATTGCATATTTGTGTCTCTTTTCCGTGTTAAAATCATTCATTCCCTTACTATTTTTGTATATTTTTCTCTATATTTTTCATAAATAAAGCTTTTTGTTCCGAAAAAACTCACGCGTTAAATCGAGATGATCCGAAAGAAGGCAATTGTGTGCCTGTGTATGTTCCTTCACTCCGATTAAGACGATGCGCGCGCACCCCCACACAACTATACTAGTCGGTTTCCCTGCTAAACAGAGCGCGGGGTGTGAAAGCGGAGTGTCGTTGCGTAAACGTGTCGACATTTGTTTATTAATGTTTTCTACGGAATTTATCGCGTTTCCCACTATTTTMTTTTAAATATTACCTCAAATAATTTTTTCCAGCACGAGAATGCCTAGAAAACGTGTAGCATTTCAAAAAGCGGACGGGAACGACCGGAGTTTTACAATTGCGTCGCTGGAATTTTGTTTATCTCAGCTGCGCAAAGCAGATCCGAACTTGGTAAAGAAAGCAATTGCATCGGGAGATGGACTTACTGAATCTAAAGGTGAGTATTACATTTTTAACTGATAAATGTTTTGAAAAATCGATGAATTAAGACGATGTGAGCACACGACTGTCCGAGGCGCATCGTTATGCCGTCCAGCAATGTCTCGACAACTCGGAGTCACTAGCTCAGCTACATCATCAGCTCGTTCTTTGTGACAACGTCTTCGAGGTGAGAAGGAAACTGATAAAAAATATAGTAAAAAGGCCACGAGGCTGCGTACGCCACACAATTCCAAGAAAAACATTCTGAATTTCTTTTACAGCGCCTTCAAGCAACATTATACAGTTTTCAAGACAGTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGACATTTGTTTATTAATGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTAGATTCAGTAAGTCCATCTCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCGACATTTGTTTATTAATGTTTTCTACGGAATTTATCGCGTTTCCCACTATTTTCTTTTAAATATTACCTCAAATAATTTTTTCCAGCACGAGAATGCCTAGAAAACGTGTAGCATTTCAAAAAGCGGACGGGAACGACCGGAGTTTTACAATTGCGTCGCTGGAATTTTGTTTATCTCAGCTGCGCAAAGCAGATCCGAACTTGGTAAAGAAAGCAATTGCATCGGGAGATGGACTTACTGAATCTAA</canonical_amplicon>
		<polymorphic_amplicon>TCGACATTTGTTTATTAATGTTTTCTACGGAATTTATCGCGTTTCCCACTATTTTMTTTTAAATATTACCTCAAATAATTTTTTCCAGCACGAGAATGCCTAGAAAACGTGTAGCATTTCAAAAAGCGGACGGGAACGACCGGAGTTTTACAATTGCGTCGCTGGAATTTTGTTTATCTCAGCTGCGCAAAGCAGATCCGAACTTGGTAAAGAAAGCAATTGCATCGGGAGATGGACTTACTGAATCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16434</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>187057</contig_pos>
        <strand>+</strand>
        <context>TGTCAACAAT[A/G]AAGAAGCTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTACAGCCACGAATTTCTGTTCATTACGGATTTTTTCCTTGTCAACAAT</left_flank>
        <right_flank>AAGAAGCTGTTGAGCTTCATAATAAGGTGATTAGAGTTTGTAAACTCTTC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGACACTGTGAGCAAGATGTTTTTCACATATTTCAAGGCCTACGCGGCTCGCCTCTTTAAGCTCTCGGTTAGTGAAAAATGAGCTCCCATTTCCTCTTGCTCACTCTCTGAGCCTCTCCGCATCTTCTCATCTCATTACTTCAGATGAAAGACGTCGCCACCAAAGACGACACACTCGGCAATATTGAATCGGCGAAGCCAGCTGGCCTTGGCTCGCTTTTCTCATCTAAACAACATGTTGTACGGAATAAAGCCACTGTGTTCTCCATCGGCCAACGTCACACGGTTCTGTCGGATGAGTTCTTCGGAGCACTAATTGTACCACACGCAGCTACACAGAATCATATATCGGTTATTTTGCTCTTTTAAATTATAATTGCTTATTGTTTTTTTTTCAGTATCAATTCGAATCACTCTTCCGATCTCTGCAGTTGGCATTTGTCGATCATTACAGCCACGAATTTCTGTTCATTACGGATTTTTTCCTTGTCAACAATAAAGAAGCTGTTGAGCTTCATAATAAGGTGATTAGAGTTTGTAAACTCTTCTTCACATTTTCAGTATTTAGGCTATTGCTCGAGCAATGTCAGTTGTGCTCAAAAGTTGTGAGGAGCAGATTGCGTTGAGTTTTGATGCTATAAGTCTCCATTTGTGCATTTGTCTGTGCGACAAGTTTGTCAACGTGCTTGCTGAGCGAGAAGTCCCAGAAGCCACCGAATACTGGAATACCGTCGCTAGTTTCCTCTGGACTCGTCTCAACTTTGTCATGGCCCAACACTACGACAGTGTCAAAGCGGTCGATGTGAAGAAACTGATGCATAGTGGATCTTTGGACACTAGACCTCACTATGTAAGTTGTTGATTGTGTTTCTTCCCATATTCAAAATGAGGAAAACCGATCAATAAGCTTACAGATTGTTCGACGATATGCCGAGTTGACTAGTGCCCATCTCACAATTGCACACACCAGTGGGAAGGAGATTGGTGACAAGATGGAA</canonical>
            <polymorphic>ATTGACACTGTGAGCAAGATGTTTTTCACATATTTCAAGGCCTACGCGGCTCGCCTCTTTAAGCTCTCGGTTAGTGAAAAATGAGCTCCCATTTCCTCTTGCTCACTCTCTGAGCCTCTCCGCATCTTCTCATCTCATTACTTCAGATGAAAGACGTCGCCACCAAAGACGACACACTCGGCAATATTGAATCGGCGAAGCCAGCTGGCCTTGGCTCGCTTTTCTCATCTAAACAACATGTTGTACGGAATAAAGCCACTGTGTTCTCCATCGGCCAACGTCACACGGTTCTGTCGGATGAGTTCTTCGGAGCACTAATTGTACCACACGCAGCTACACAGAATCATATATCGGTTATTTTGCTCTTTTAAATTATAATTGCTTATTGTTTTTTTTTCAGTATCAATTCGAATCACTCTTCCGATCTCTGCAGTTGGCATTTGTCGATCATTACAGCCACGAATTTCTGTTCATTACGGATTTTTTCCTTGTCAACAATRAAGAAGCTGTTGAGCTTCATAATAAGGTGATTAGAGTTTGTAAACTCTTCTTCACATTTTCAGTATTTAGGCTATTGCTCGAGCAATGTCAGTTGTGCTCAAAAGTTGTGAGGAGCAGATTGCGTTGAGTTTTGATGCTATAAGTCTCCATTTGTGCATTTGTCTGTGCGACAAGTTTGTCAACGTGCTTGCTGAGCGAGAAGTCCCAGAAGCCACCGAATACTGGAATACCGTCGCTAGTTTCCTCTGGACTCGTCTCAACTTTGTCATGGCCCAACACTACGACAGTGTCAAAGCGGTCGATGTGAAGAAACTGATGCATAGTGGATCTTTGGACACTAGACCTCACTATGTAAGTTGTTGATTGTGTTTCTTCCCATATTCAAAATGAGGAAAACCGATCAATAAGCTTACAGATTGTTCGACGATATGCCGAGTTGACTAGTGCCCATCTCACAATTGCACACACCAGTGGGAAGGAGATTGGTGACAAGATGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTATCAATTCGAATCACTCTT</pcr_primer_p1>
		<pcr_primer_p2>TGGAGACTTATAGCATCAAAACT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CAGTATCAATTCGAATCACTCTTCCGATCTCTGCAGTTGGCATTTGTCGATCATTACAGCCACGAATTTCTGTTCATTACGGATTTTTTCCTTGTCAACAATAAAGAAGCTGTTGAGCTTCATAATAAGGTGATTAGAGTTTGTAAACTCTTCTTCACATTTTCAGTATTTAGGCTATTGCTCGAGCAATGTCAGTTGTGCTCAAAAGTTGTGAGGAGCAGATTGCGTTGAGTTTTGATGCTATAAGTCTCCA</canonical_amplicon>
		<polymorphic_amplicon>CAGTATCAATTCGAATCACTCTTCCGATCTCTGCAGTTGGCATTTGTCGATCATTACAGCCACGAATTTCTGTTCATTACGGATTTTTTCCTTGTCAACAATRAAGAAGCTGTTGAGCTTCATAATAAGGTGATTAGAGTTTGTAAACTCTTCTTCACATTTTCAGTATTTAGGCTATTGCTCGAGCAATGTCAGTTGTGCTCAAAAGTTGTGAGGAGCAGATTGCGTTGAGTTTTGATGCTATAAGTCTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16435</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>200366</contig_pos>
        <strand>+</strand>
        <context>TGTGGACAAA[C/T]AAAATTGATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCACAACTTTTTAAATGTCACTTGGTATGTGTCGGAATTGTGGACAAA</left_flank>
        <right_flank>AAAATTGATATTGAAGAAGGAAAAGAACGAATAAGTAGGAAAAAGAGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTAAGAAAAACTAAGGCTTTAGTCTCTCATAACTGTACATACGATTCATGACAAAGGATTTTTCAAAGTTGTTGTCTCTTTTGCAGAGGAGCTCTATTGACAGAGTTCAACTCATTTGCAGCAATATTTTTTCTTCTTCACCAAAATGTTCATTGCCATTCTCCCCAAAACTTTTTTTCAGTAAATAATTCTTTGTAACGTTACAAGTGGTCCCTTCTTCCCCCTTATTGCATTTGTTCTATTAAAATTAAGCTTTCAACACAATACAGAAAACAAAGACAAACCGGTAGAGGGAACAGGAACGAGAAGAATGAATGTATCCGTATTTGAACTTTGCATAATGTTTGCATTCAACTGGTAGTAGTAGTCCAGTGTAATATTAGCCGTCTCCCGGTCGGACGGTCGTCATTCACGGGTGGTCGAGATGAAGCATCGTCTTCAACTGGTTCCACAACTTTTTAAATGTCACTTGGTATGTGTCGGAATTGTGGACAAACAAAATTGATATTGAAGAAGGAAAAGAACGAATAAGTAGGAAAAAGAGAAAAAGACTGAAAGATGGAAACAATAATGGAAGATGATGATGTTCCATGAAATTATTTGCTTTGTTAGAAAAGGGTTCAAAATACAAAGTACAAACTTGGAAATTTGAAAATTTCGTAAATGATCAAAAACCTCTCTTTTTCAGATTCTAGAAATTTTCTAGAAGTTGAGAACATCGCTTTTGAAAACCGCGGTCTTTGCTAATGAAACTGATATAACTGTACTGGAACTGGTTTTAAAATTTTTAGAAATGATAAGATAGATTATTCGTAATCTATCTTGAAGTTTACATCAAAATATAAGTTTATATGGTGTTCAGGTTAGGTTGCGAATTTTGATTTTATACAAGTTTTCAGAACGCCTATCACGTAAAATTATAGTCTCCAACCTGCACAAAATATAATGTTTCAGATGAAGTGAGTTCAACATTACACAATGAAACTCCTAAAAAAAT</canonical>
            <polymorphic>TTTCTAAGAAAAACTAAGGCTTTAGTCTCTCATAACTGTACATACGATTCATGACAAAGGATTTTTCAAAGTTGTTGTCTCTTTTGCAGAGGAGCTCTATTGACAGAGTTCAACTCATTTGCAGCAATATTTTTTCTTCTTCACCAAAATGTTCATTGCCATTCTCCCCAAAACTTTTTTTCAGTAAATAATTCTTTGTAACGTTACAAGTGGTCCCTTCTTCCCCCTTATTGCATTTGTTCTATTAAAATTAAGCTTTCAACACAATACAGAAAACAAAGACAAACCGGTAGAGGGAACAGGAACGAGAAGAATGAATGTATCCGTATTTGAACTTTGCATAATGTTTGCATTCAACTGGTAGTAGTAGTCCAGTGTAATATTAGCCGTCTCCCGGTCGGACGGTCGTCATTCACGGGTGGTCGAGATGAAGCATCGTCTTCAACTGGTTCCACAACTTTTTAAATGTCACTTGGTATGTGTCGGAATTGTGGACAAAYAAAATTGATATTGAAGAAGGAAAAGAACGAATAAGTAGGAAAAAGAGAAAAAGACTGAAAGATGGAAACAATAATGGAAGATGATGATGTTCCATGAAATTATTTGCTTTGTTAGAAAAGGGTTCAAAATACAAAGTACAAACTTGGAAATTTGAAAATTTCGTAAATGATCAAAAACCTCTCTTTTTCAGATTCTAGAAATTTTCTAGAAGTTGAGAACATCGCTTTTGAAAACCGCGGTCTTTGCTAATGAAACTGATATAACTGTACTGGAACTGGTTTTAAAATTTTTAGAAATGATAAGATAGATTATTCGTAATCTATCTTGAAGTTTACATCAAAATATAAGTTTATATGGTGTTCAGGTTAGGTTGCGAATTTTGATTTTATACAAGTTTTCAGAACGCCTATCACGTAAAATTATAGTCTCCAACCTGCACAAAATATAATGTTTCAGATGAAGTGAGTTCAACATTACACAATGAAACTCCTAAAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTATCCGTATTTGAACTTTG</pcr_primer_p1>
		<pcr_primer_p2>CCATCTTTCAGTCTTTTTCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATGTATCCGTATTTGAACTTTGCATAATGTTTGCATTCAACTGGTAGTAGTAGTCCAGTGTAATATTAGCCGTCTCCCGGTCGGACGGTCGTCATTCACGGGTGGTCGAGATGAAGCATCGTCTTCAACTGGTTCCACAACTTTTTAAATGTCACTTGGTATGTGTCGGAATTGTGGACAAACAAAATTGATATTGAAGAAGGAAAAGAACGAATAAGTAGGAAAAAGAGAAAAAGACTGAAAGATGG</canonical_amplicon>
		<polymorphic_amplicon>AATGTATCCGTATTTGAACTTTGCATAATGTTTGCATTCAACTGGTAGTAGTAGTCCAGTGTAATATTAGCCGTCTCCCGGTCGGACGGTCGTCATTCACGGGTGGTCGAGATGAAGCATCGTCTTCAACTGGTTCCACAACTTTTTAAATGTCACTTGGTATGTGTCGGAATTGTGGACAAAYAAAATTGATATTGAAGAAGGAAAAGAACGAATAAGTAGGAAAAAGAGAAAAAGACTGAAAGATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16436</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>200438</contig_pos>
        <strand>+</strand>
        <context>ATGGAAACAA[A/T]AATGGAAGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAGAACGAATAAGTAGGAAAAAGAGAAAAAGACTGAAAGATGGAAACAA</left_flank>
        <right_flank>AATGGAAGATGATGATGTTCCATGAAATTATTTGCTTTGTTAGAAAAGGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTGTCTCTTTTGCAGAGGAGCTCTATTGACAGAGTTCAACTCATTTGCAGCAATATTTTTTCTTCTTCACCAAAATGTTCATTGCCATTCTCCCCAAAACTTTTTTTCAGTAAATAATTCTTTGTAACGTTACAAGTGGTCCCTTCTTCCCCCTTATTGCATTTGTTCTATTAAAATTAAGCTTTCAACACAATACAGAAAACAAAGACAAACCGGTAGAGGGAACAGGAACGAGAAGAATGAATGTATCCGTATTTGAACTTTGCATAATGTTTGCATTCAACTGGTAGTAGTAGTCCAGTGTAATATTAGCCGTCTCCCGGTCGGACGGTCGTCATTCACGGGTGGTCGAGATGAAGCATCGTCTTCAACTGGTTCCACAACTTTTTAAATGTCACTTGGTATGTGTCGGAATTGTGGACAAACAAAATTGATATTGAAGAAGGAAAAGAACGAATAAGTAGGAAAAAGAGAAAAAGACTGAAAGATGGAAACAATAATGGAAGATGATGATGTTCCATGAAATTATTTGCTTTGTTAGAAAAGGGTTCAAAATACAAAGTACAAACTTGGAAATTTGAAAATTTCGTAAATGATCAAAAACCTCTCTTTTTCAGATTCTAGAAATTTTCTAGAAGTTGAGAACATCGCTTTTGAAAACCGCGGTCTTTGCTAATGAAACTGATATAACTGTACTGGAACTGGTTTTAAAATTTTTAGAAATGATAAGATAGATTATTCGTAATCTATCTTGAAGTTTACATCAAAATATAAGTTTATATGGTGTTCAGGTTAGGTTGCGAATTTTGATTTTATACAAGTTTTCAGAACGCCTATCACGTAAAATTATAGTCTCCAACCTGCACAAAATATAATGTTTCAGATGAAGTGAGTTCAACATTACACAATGAAACTCCTAAAAAAATTATTGCAACAACCTCTCAGTTTTCGTTAAACTGAAATTGATTTTTAACATACAAGATACAGATATTCTTTTT</canonical>
            <polymorphic>TGTTGTCTCTTTTGCAGAGGAGCTCTATTGACAGAGTTCAACTCATTTGCAGCAATATTTTTTCTTCTTCACCAAAATGTTCATTGCCATTCTCCCCAAAACTTTTTTTCAGTAAATAATTCTTTGTAACGTTACAAGTGGTCCCTTCTTCCCCCTTATTGCATTTGTTCTATTAAAATTAAGCTTTCAACACAATACAGAAAACAAAGACAAACCGGTAGAGGGAACAGGAACGAGAAGAATGAATGTATCCGTATTTGAACTTTGCATAATGTTTGCATTCAACTGGTAGTAGTAGTCCAGTGTAATATTAGCCGTCTCCCGGTCGGACGGTCGTCATTCACGGGTGGTCGAGATGAAGCATCGTCTTCAACTGGTTCCACAACTTTTTAAATGTCACTTGGTATGTGTCGGAATTGTGGACAAACAAAATTGATATTGAAGAAGGAAAAGAACGAATAAGTAGGAAAAAGAGAAAAAGACTGAAAGATGGAAACAAWAATGGAAGATGATGATGTTCCATGAAATTATTTGCTTTGTTAGAAAAGGGTTCAAAATACAAAGTACAAACTTGGAAATTTGAAAATTTCGTAAATGATCAAAAACCTCTCTTTTTCAGATTCTAGAAATTTTCTAGAAGTTGAGAACATCGCTTTTGAAAACCGCGGTCTTTGCTAATGAAACTGATATAACTGTACTGGAACTGGTTTTAAAATTTTTAGAAATGATAAGATAGATTATTCGTAATCTATCTTGAAGTTTACATCAAAATATAAGTTTATATGGTGTTCAGGTTAGGTTGCGAATTTTGATTTTATACAAGTTTTCAGAACGCCTATCACGTAAAATTATAGTCTCCAACCTGCACAAAATATAATGTTTCAGATGAAGTGAGTTCAACATTACACAATGAAACTCCTAAAAAAATTATTGCAACAACCTCTCAGTTTTCGTTAAACTGAAATTGATTTTTAACATACAAGATACAGATATTCTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGAAGGAAAAGAACGAATAAG</pcr_primer_p1>
		<pcr_primer_p2>TATCAGTTTCATTAGCAAAGACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAGAAGGAAAAGAACGAATAAGTAGGAAAAAGAGAAAAAGACTGAAAGATGGAAACAATAATGGAAGATGATGATGTTCCATGAAATTATTTGCTTTGTTAGAAAAGGGTTCAAAATACAAAGTACAAACTTGGAAATTTGAAAATTTCGTAAATGATCAAAAACCTCTCTTTTTCAGATTCTAGAAATTTTCTAGAAGTTGAGAACATCGCTTTTGAAAACCGCGGTCTTTGCTAATGAAACTGATA</canonical_amplicon>
		<polymorphic_amplicon>GAAGAAGGAAAAGAACGAATAAGTAGGAAAAAGAGAAAAAGACTGAAAGATGGAAACAAWAATGGAAGATGATGATGTTCCATGAAATTATTTGCTTTGTTAGAAAAGGGTTCAAAATACAAAGTACAAACTTGGAAATTTGAAAATTTCGTAAATGATCAAAAACCTCTCTTTTTCAGATTCTAGAAATTTTCTAGAAGTTGAGAACATCGCTTTTGAAAACCGCGGTCTTTGCTAATGAAACTGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16437</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>200487</contig_pos>
        <strand>+</strand>
        <context>GTTAGAAAAG[A/G]GTTCARAATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAATGGAAGATGATGATGTTCCATGAAATTATTTGCTTTGTTAGAAAAG</left_flank>
        <right_flank>GTTCAAAATACAAAGTACAAACTTGGAAATTTGAAAATTTCGTAAATGAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCAATATTTTTTCTTCTTCACCAAAATGTTCATTGCCATTCTCCCCAAAACTTTTTTTCAGTAAATAATTCTTTGTAACGTTACAAGTGGTCCCTTCTTCCCCCTTATTGCATTTGTTCTATTAAAATTAAGCTTTCAACACAATACAGAAAACAAAGACAAACCGGTAGAGGGAACAGGAACGAGAAGAATGAATGTATCCGTATTTGAACTTTGCATAATGTTTGCATTCAACTGGTAGTAGTAGTCCAGTGTAATATTAGCCGTCTCCCGGTCGGACGGTCGTCATTCACGGGTGGTCGAGATGAAGCATCGTCTTCAACTGGTTCCACAACTTTTTAAATGTCACTTGGTATGTGTCGGAATTGTGGACAAACAAAATTGATATTGAAGAAGGAAAAGAACGAATAAGTAGGAAAAAGAGAAAAAGACTGAAAGATGGAAACAATAATGGAAGATGATGATGTTCCATGAAATTATTTGCTTTGTTAGAAAAGGGTTCAAAATACAAAGTACAAACTTGGAAATTTGAAAATTTCGTAAATGATCAAAAACCTCTCTTTTTCAGATTCTAGAAATTTTCTAGAAGTTGAGAACATCGCTTTTGAAAACCGCGGTCTTTGCTAATGAAACTGATATAACTGTACTGGAACTGGTTTTAAAATTTTTAGAAATGATAAGATAGATTATTCGTAATCTATCTTGAAGTTTACATCAAAATATAAGTTTATATGGTGTTCAGGTTAGGTTGCGAATTTTGATTTTATACAAGTTTTCAGAACGCCTATCACGTAAAATTATAGTCTCCAACCTGCACAAAATATAATGTTTCAGATGAAGTGAGTTCAACATTACACAATGAAACTCCTAAAAAAATTATTGCAACAACCTCTCAGTTTTCGTTAAACTGAAATTGATTTTTAACATACAAGATACAGATATTCTTTTTCTCGTAATTCTGACTTTTTTGTCTCATCAGAATCGAACTCAGCAAAGAA</canonical>
            <polymorphic>CAGCAATATTTTTTCTTCTTCACCAAAATGTTCATTGCCATTCTCCCCAAAACTTTTTTTCAGTAAATAATTCTTTGTAACGTTACAAGTGGTCCCTTCTTCCCCCTTATTGCATTTGTTCTATTAAAATTAAGCTTTCAACACAATACAGAAAACAAAGACAAACCGGTAGAGGGAACAGGAACGAGAAGAATGAATGTATCCGTATTTGAACTTTGCATAATGTTTGCATTCAACTGGTAGTAGTAGTCCAGTGTAATATTAGCCGTCTCCCGGTCGGACGGTCGTCATTCACGGGTGGTCGAGATGAAGCATCGTCTTCAACTGGTTCCACAACTTTTTAAATGTCACTTGGTATGTGTCGGAATTGTGGACAAACAAAATTGATATTGAAGAAGGAAAAGAACGAATAAGTAGGAAAAAGAGAAAAAGACTGAAAGATGGAAACAATAATGGAAGATGATGATGTTCCATGAAATTATTTGCTTTGTTAGAAAAGRGTTCAAAATACAAAGTACAAACTTGGAAATTTGAAAATTTCGTAAATGATCAAAAACCTCTCTTTTTCAGATTCTAGAAATTTTCTAGAAGTTGAGAACATCGCTTTTGAAAACCGCGGTCTTTGCTAATGAAACTGATATAACTGTACTGGAACTGGTTTTAAAATTTTTAGAAATGATAAGATAGATTATTCGTAATCTATCTTGAAGTTTACATCAAAATATAAGTTTATATGGTGTTCAGGTTAGGTTGCGAATTTTGATTTTATACAAGTTTTCAGAACGCCTATCACGTAAAATTATAGTCTCCAACCTGCACAAAATATAATGTTTCAGATGAAGTGAGTTCAACATTACACAATGAAACTCCTAAAAAAATTATTGCAACAACCTCTCAGTTTTCGTTAAACTGAAATTGATTTTTAACATACAAGATACAGATATTCTTTTTCTCGTAATTCTGACTTTTTTGTCTCATCAGAATCGAACTCAGCAAAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGAAGGAAAAGAACGAATAAG</pcr_primer_p1>
		<pcr_primer_p2>TATCAGTTTCATTAGCAAAGACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAGAAGGAAAAGAACGAATAAGTAGGAAAAAGAGAAAAAGACTGAAAGATGGAAACAATAATGGAAGATGATGATGTTCCATGAAATTATTTGCTTTGTTAGAAAAGGGTTCAAAATACAAAGTACAAACTTGGAAATTTGAAAATTTCGTAAATGATCAAAAACCTCTCTTTTTCAGATTCTAGAAATTTTCTAGAAGTTGAGAACATCGCTTTTGAAAACCGCGGTCTTTGCTAATGAAACTGATA</canonical_amplicon>
		<polymorphic_amplicon>GAAGAAGGAAAAGAACGAATAAGTAGGAAAAAGAGAAAAAGACTGAAAGATGGAAACAATAATGGAAGATGATGATGTTCCATGAAATTATTTGCTTTGTTAGAAAAGRGTTCAAAATACAAAGTACAAACTTGGAAATTTGAAAATTTCGTAAATGATCAAAAACCTCTCTTTTTCAGATTCTAGAAATTTTCTAGAAGTTGAGAACATCGCTTTTGAAAACCGCGGTCTTTGCTAATGAAACTGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16438</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>200493</contig_pos>
        <strand>+</strand>
        <context>AAAGRGTTCA[A/G]AATACAAAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGATGATGATGTTCCATGAAATTATTTGCTTTGTTAGAAAAGGGTTCA</left_flank>
        <right_flank>AATACAAAGTACAAACTTGGAAATTTGAAAATTTCGTAAATGATCAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTTTTCTTCTTCACCAAAATGTTCATTGCCATTCTCCCCAAAACTTTTTTTCAGTAAATAATTCTTTGTAACGTTACAAGTGGTCCCTTCTTCCCCCTTATTGCATTTGTTCTATTAAAATTAAGCTTTCAACACAATACAGAAAACAAAGACAAACCGGTAGAGGGAACAGGAACGAGAAGAATGAATGTATCCGTATTTGAACTTTGCATAATGTTTGCATTCAACTGGTAGTAGTAGTCCAGTGTAATATTAGCCGTCTCCCGGTCGGACGGTCGTCATTCACGGGTGGTCGAGATGAAGCATCGTCTTCAACTGGTTCCACAACTTTTTAAATGTCACTTGGTATGTGTCGGAATTGTGGACAAACAAAATTGATATTGAAGAAGGAAAAGAACGAATAAGTAGGAAAAAGAGAAAAAGACTGAAAGATGGAAACAATAATGGAAGATGATGATGTTCCATGAAATTATTTGCTTTGTTAGAAAAGGGTTCAAAATACAAAGTACAAACTTGGAAATTTGAAAATTTCGTAAATGATCAAAAACCTCTCTTTTTCAGATTCTAGAAATTTTCTAGAAGTTGAGAACATCGCTTTTGAAAACCGCGGTCTTTGCTAATGAAACTGATATAACTGTACTGGAACTGGTTTTAAAATTTTTAGAAATGATAAGATAGATTATTCGTAATCTATCTTGAAGTTTACATCAAAATATAAGTTTATATGGTGTTCAGGTTAGGTTGCGAATTTTGATTTTATACAAGTTTTCAGAACGCCTATCACGTAAAATTATAGTCTCCAACCTGCACAAAATATAATGTTTCAGATGAAGTGAGTTCAACATTACACAATGAAACTCCTAAAAAAATTATTGCAACAACCTCTCAGTTTTCGTTAAACTGAAATTGATTTTTAACATACAAGATACAGATATTCTTTTTCTCGTAATTCTGACTTTTTTGTCTCATCAGAATCGAACTCAGCAAAGAAGTTATC</canonical>
            <polymorphic>TATTTTTTCTTCTTCACCAAAATGTTCATTGCCATTCTCCCCAAAACTTTTTTTCAGTAAATAATTCTTTGTAACGTTACAAGTGGTCCCTTCTTCCCCCTTATTGCATTTGTTCTATTAAAATTAAGCTTTCAACACAATACAGAAAACAAAGACAAACCGGTAGAGGGAACAGGAACGAGAAGAATGAATGTATCCGTATTTGAACTTTGCATAATGTTTGCATTCAACTGGTAGTAGTAGTCCAGTGTAATATTAGCCGTCTCCCGGTCGGACGGTCGTCATTCACGGGTGGTCGAGATGAAGCATCGTCTTCAACTGGTTCCACAACTTTTTAAATGTCACTTGGTATGTGTCGGAATTGTGGACAAACAAAATTGATATTGAAGAAGGAAAAGAACGAATAAGTAGGAAAAAGAGAAAAAGACTGAAAGATGGAAACAATAATGGAAGATGATGATGTTCCATGAAATTATTTGCTTTGTTAGAAAAGGGTTCARAATACAAAGTACAAACTTGGAAATTTGAAAATTTCGTAAATGATCAAAAACCTCTCTTTTTCAGATTCTAGAAATTTTCTAGAAGTTGAGAACATCGCTTTTGAAAACCGCGGTCTTTGCTAATGAAACTGATATAACTGTACTGGAACTGGTTTTAAAATTTTTAGAAATGATAAGATAGATTATTCGTAATCTATCTTGAAGTTTACATCAAAATATAAGTTTATATGGTGTTCAGGTTAGGTTGCGAATTTTGATTTTATACAAGTTTTCAGAACGCCTATCACGTAAAATTATAGTCTCCAACCTGCACAAAATATAATGTTTCAGATGAAGTGAGTTCAACATTACACAATGAAACTCCTAAAAAAATTATTGCAACAACCTCTCAGTTTTCGTTAAACTGAAATTGATTTTTAACATACAAGATACAGATATTCTTTTTCTCGTAATTCTGACTTTTTTGTCTCATCAGAATCGAACTCAGCAAAGAAGTTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGAAGGAAAAGAACGAATAAG</pcr_primer_p1>
		<pcr_primer_p2>TATCAGTTTCATTAGCAAAGACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAGAAGGAAAAGAACGAATAAGTAGGAAAAAGAGAAAAAGACTGAAAGATGGAAACAATAATGGAAGATGATGATGTTCCATGAAATTATTTGCTTTGTTAGAAAAGGGTTCAAAATACAAAGTACAAACTTGGAAATTTGAAAATTTCGTAAATGATCAAAAACCTCTCTTTTTCAGATTCTAGAAATTTTCTAGAAGTTGAGAACATCGCTTTTGAAAACCGCGGTCTTTGCTAATGAAACTGATA</canonical_amplicon>
		<polymorphic_amplicon>GAAGAAGGAAAAGAACGAATAAGTAGGAAAAAGAGAAAAAGACTGAAAGATGGAAACAATAATGGAAGATGATGATGTTCCATGAAATTATTTGCTTTGTTAGAAAAGGGTTCARAATACAAAGTACAAACTTGGAAATTTGAAAATTTCGTAAATGATCAAAAACCTCTCTTTTTCAGATTCTAGAAATTTTCTAGAAGTTGAGAACATCGCTTTTGAAAACCGCGGTCTTTGCTAATGAAACTGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16439</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>200561</contig_pos>
        <strand>+</strand>
        <context>TTTTCAGATT[C/T]TAGAAATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGAAATTTGAAAATTTCGTAAATGATCAAAAACCTCTCTTTTTCAGATT</left_flank>
        <right_flank>TAGAAATTTTCTAGAAGTTGAGAACATCGCTTTTGAAAACCGCGGTCTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTAACGTTACAAGTGGTCCCTTCTTCCCCCTTATTGCATTTGTTCTATTAAAATTAAGCTTTCAACACAATACAGAAAACAAAGACAAACCGGTAGAGGGAACAGGAACGAGAAGAATGAATGTATCCGTATTTGAACTTTGCATAATGTTTGCATTCAACTGGTAGTAGTAGTCCAGTGTAATATTAGCCGTCTCCCGGTCGGACGGTCGTCATTCACGGGTGGTCGAGATGAAGCATCGTCTTCAACTGGTTCCACAACTTTTTAAATGTCACTTGGTATGTGTCGGAATTGTGGACAAACAAAATTGATATTGAAGAAGGAAAAGAACGAATAAGTAGGAAAAAGAGAAAAAGACTGAAAGATGGAAACAATAATGGAAGATGATGATGTTCCATGAAATTATTTGCTTTGTTAGAAAAGGGTTCAAAATACAAAGTACAAACTTGGAAATTTGAAAATTTCGTAAATGATCAAAAACCTCTCTTTTTCAGATTCTAGAAATTTTCTAGAAGTTGAGAACATCGCTTTTGAAAACCGCGGTCTTTGCTAATGAAACTGATATAACTGTACTGGAACTGGTTTTAAAATTTTTAGAAATGATAAGATAGATTATTCGTAATCTATCTTGAAGTTTACATCAAAATATAAGTTTATATGGTGTTCAGGTTAGGTTGCGAATTTTGATTTTATACAAGTTTTCAGAACGCCTATCACGTAAAATTATAGTCTCCAACCTGCACAAAATATAATGTTTCAGATGAAGTGAGTTCAACATTACACAATGAAACTCCTAAAAAAATTATTGCAACAACCTCTCAGTTTTCGTTAAACTGAAATTGATTTTTAACATACAAGATACAGATATTCTTTTTCTCGTAATTCTGACTTTTTTGTCTCATCAGAATCGAACTCAGCAAAGAAGTTATCAATTAAAAATTAAAAAATAATTTTTTTTATTTTCCTTTTTTCAGAGCAATTTGAATATTATGGAATAC</canonical>
            <polymorphic>TTGTAACGTTACAAGTGGTCCCTTCTTCCCCCTTATTGCATTTGTTCTATTAAAATTAAGCTTTCAACACAATACAGAAAACAAAGACAAACCGGTAGAGGGAACAGGAACGAGAAGAATGAATGTATCCGTATTTGAACTTTGCATAATGTTTGCATTCAACTGGTAGTAGTAGTCCAGTGTAATATTAGCCGTCTCCCGGTCGGACGGTCGTCATTCACGGGTGGTCGAGATGAAGCATCGTCTTCAACTGGTTCCACAACTTTTTAAATGTCACTTGGTATGTGTCGGAATTGTGGACAAACAAAATTGATATTGAAGAAGGAAAAGAACGAATAAGTAGGAAAAAGAGAAAAAGACTGAAAGATGGAAACAATAATGGAAGATGATGATGTTCCATGAAATTATTTGCTTTGTTAGAAAAGGGTTCAAAATACAAAGTACAAACTTGGAAATTTGAAAATTTCGTAAATGATCAAAAACCTCTCTTTTTCAGATTYTAGAAATTTTCTAGAAGTTGAGAACATCGCTTTTGAAAACCGCGGTCTTTGCTAATGAAACTGATATAACTGTACTGGAACTGGTTTTAAAATTTTTAGAAATGATAAGATAGATTATTCGTAATCTATCTTGAAGTTTACATCAAAATATAAGTTTATATGGTGTTCAGGTTAGGTTGCGAATTTTGATTTTATACAAGTTTTCAGAACGCCTATCACGTAAAATTATAGTCTCCAACCTGCACAAAATATAATGTTTCAGATGAAGTGAGTTCAACATTACACAATGAAACTCCTAAAAAAATTATTGCAACAACCTCTCAGTTTTCGTTAAACTGAAATTGATTTTTAACATACAAGATACAGATATTCTTTTTCTCGTAATTCTGACTTTTTTGTCTCATCAGAATCGAACTCAGCAAAGAAGTTATCAATTAAAAATTAAAAAATAATTTTTTTTATTTTCCTTTTTTCAGAGCAATTTGAATATTATGGAATAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 489 11</canonical_bands>
                <polymorphic_bands>511 489</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>496 411 93</canonical_bands>
                <polymorphic_bands>907 93</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>370 271 229 119 11</canonical_bands>
                <polymorphic_bands>370 282 229 119</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>496 411 93</canonical_bands>
                <polymorphic_bands>907 93</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 490 11</canonical_bands>
                <polymorphic_bands>510 490</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGAAGGAAAAGAACGAATAAG</pcr_primer_p1>
		<pcr_primer_p2>TATCAGTTTCATTAGCAAAGACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAGAAGGAAAAGAACGAATAAGTAGGAAAAAGAGAAAAAGACTGAAAGATGGAAACAATAATGGAAGATGATGATGTTCCATGAAATTATTTGCTTTGTTAGAAAAGGGTTCAAAATACAAAGTACAAACTTGGAAATTTGAAAATTTCGTAAATGATCAAAAACCTCTCTTTTTCAGATTCTAGAAATTTTCTAGAAGTTGAGAACATCGCTTTTGAAAACCGCGGTCTTTGCTAATGAAACTGATA</canonical_amplicon>
		<polymorphic_amplicon>GAAGAAGGAAAAGAACGAATAAGTAGGAAAAAGAGAAAAAGACTGAAAGATGGAAACAATAATGGAAGATGATGATGTTCCATGAAATTATTTGCTTTGTTAGAAAAGGGTTCAAAATACAAAGTACAAACTTGGAAATTTGAAAATTTCGTAAATGATCAAAAACCTCTCTTTTTCAGATTYTAGAAATTTTCTAGAAGTTGAGAACATCGCTTTTGAAAACCGCGGTCTTTGCTAATGAAACTGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16440</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>201808</contig_pos>
        <strand>+</strand>
        <context>GATAGGTGAC[C/T]AATATCCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATACGCATTGTCCCGGAGAGCGTAGGTGGTGAGTGGTAGATAGGTGAC</left_flank>
        <right_flank>AATATCCAAAGTGGATATAAATTAAACTGAAGAATGTTTTCCTGTTCTTC</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACAATATTCATTACTATTTTTTGTATGTGTTGTAGATTATTTCATAACAATTTTTGAATTTAAAATTCTAACCTACAGTGTTCCTTGTGTTGTACACTATGCCCTCTTTACATATTTCACTACTCTCATAGTGCAATTTTAAGAACAAGAAAATTACTCTCTGCAATTTTCTAATCCACGCACTGGTCGTTTTTAGAAAAACCCTTCCATTCTTGGCCATAGTCCAGATAGATCAGCAAGACAACGACAAGGAAAATACCACAGCACAGAACTTGTACATAAAACCTTTCCTGACAACTTAAGTGTTTTGCACTTCACGCGATTGATATAGTGGGTCTGAATGAACTTTTGAAATTTTTATTTGGTTTTTTAGCGTTTAAGGCACCGTAGAACATCGCCGTAAAAAAGGAAGTGCGACAAAGTTTTGTACAAGGTCCGCCAGTAGATAAAATACGCATTGTCCCGGAGAGCGTAGGTGGTGAGTGGTAGATAGGTGACTAATATCCAAAGTGGATATAAATTAAACTGAAGAATGTTTTCCTGTTCTTCCTGACGGTCGAGTTGAAGGATATTTGAAATTCCTCTTCAGCCACCACCCACGTTCTTAATGAGTAATGTGCTAGGATCCTCAAACAGCATATCGTTGTGTTCTTCAGAAGAATCTCATCTAACGGTAGGAGAAACGCCAACGCACTAATCGGAATGCGAGCTGATTTGAATACGCGTATCGCGTGGTGTGTCTCGCTATCCTTCATCTCATTCAGGGCGTTAAGTTTAACGGCATCAAGTGTCGAAACGAAACATGGAATCATGGGTTGAATAGTACAAAGTATTGGAATCTGACTTTTTTTGGAAATTTATAGCTAAGCACAAAACTACACTATTGTTGGAACGGGTGGAGAAAATGATGTTTGACACAAAAAGTGTCAAGAGATTCGGTTTAGCAACGCTTCGAAGCACTCGAATCAGAATTAGGACCCACGAACAGTTCTGAACTTA</canonical>
            <polymorphic>CACAATATTCATTACTATTTTTTGTATGTGTTGTAGATTATTTCATAACAATTTTTGAATTTAAAATTCTAACCTACAGTGTTCCTTGTGTTGTACACTATGCCCTCTTTACATATTTCACTACTCTCATAGTGCAATTTTAAGAACAAGAAAATTACTCTCTGCAATTTTCTAATCCACGCACTGGTCGTTTTTAGAAAAACCCTTCCATTCTTGGCCATAGTCCAGATAGATCAGCAAGACAACGACAAGGAAAATACCACAGCACAGAACTTGTACATAAAACCTTTCCTGACAACTTAAGTGTTTTGCACTTCACGCGATTGATATAGTGGGTCTGAATGAACTTTTGAAATTTTTATTTGGTTTTTTAGCGTTTAAGGCACCGTAGAACATCGCCGTAAAAAAGGAAGTGCGACAAAGTTTTGTACAAGGTCCGCCAGTAGATAAAATACGCATTGTCCCGGAGAGCGTAGGTGGTGAGTGGTAGATAGGTGACYAATATCCAAAGTGGATATAAATTAAACTGAAGAATGTTTTCCTGTTCTTCCTGACGGTCGAGTTGAAGGATATTTGAAATTCCTCTTCAGCCACCACCCACGTTCTTAATGAGTAATGTGCTAGGATCCTCAAACAGCATATCGTTGTGTTCTTCAGAAGAATCTCATCTAACGGTAGGAGAAACGCCAACGCACTAATCGGAATGCGAGCTGATTTGAATACGCGTATCGCGTGGTGTGTCTCGCTATCCTTCATCTCATTCAGGGCGTTAAGTTTAACGGCATCAAGTGTCGAAACGAAACATGGAATCATGGGTTGAATAGTACAAAGTATTGGAATCTGACTTTTTTTGGAAATTTATAGCTAAGCACAAAACTACACTATTGTTGGAACGGGTGGAGAAAATGATGTTTGACACAAAAAGTGTCAAGAGATTCGGTTTAGCAACGCTTCGAAGCACTCGAATCAGAATTAGGACCCACGAACAGTTCTGAACTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTAGATAAAATACGCATTGTCC</pcr_primer_p1>
		<pcr_primer_p2>TTCTCCTACCGTTAGATGAGATT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AGTAGATAAAATACGCATTGTCCCGGAGAGCGTAGGTGGTGAGTGGTAGATAGGTGACTAATATCCAAAGTGGATATAAATTAAACTGAAGAATGTTTTCCTGTTCTTCCTGACGGTCGAGTTGAAGGATATTTGAAATTCCTCTTCAGCCACCACCCACGTTCTTAATGAGTAATGTGCTAGGATCCTCAAACAGCATATCGTTGTGTTCTTCAGAAGAATCTCATCTAACGGTAGGAGAA</canonical_amplicon>
		<polymorphic_amplicon>AGTAGATAAAATACGCATTGTCCCGGAGAGCGTAGGTGGTGAGTGGTAGATAGGTGACYAATATCCAAAGTGGATATAAATTAAACTGAAGAATGTTTTCCTGTTCTTCCTGACGGTCGAGTTGAAGGATATTTGAAATTCCTCTTCAGCCACCACCCACGTTCTTAATGAGTAATGTGCTAGGATCCTCAAACAGCATATCGTTGTGTTCTTCAGAAGAATCTCATCTAACGGTAGGAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16441</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>207042</contig_pos>
        <strand>+</strand>
        <context>ACGGCAATCC[C/T]ACAGGCTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGCCAATAACATAAAACTCCCTAGATTCCGTTCAGGATAACGGCAATCC</left_flank>
        <right_flank>ACAGGCTTCTAGATAATTATTTTAACCCTCTTCCAACGCAAAATTTCGCG</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAGGCGCCAAACTGACGGACGGGAAGCCCGAGAGTGGCCCCTTCGCATCGCGCAACGGCTACTTTTTGGGAGAATATGACCAGTTTTGTTGCGTTTCAAAACCGAAAACACTATTTCGCACCATACACACACAAGTCAGCCACCGTGAAAACATTGATGAACCCCGGGTCGACACCGGGGCCCGAGAGATTTGAGATTAAGAATAGAAAAGTGGGCGGAGAGGTAATCCAATTGGTTTTTGACAATAAGACAACAACCCTTCGAAAAACACGGAGGGTTTAAAAGAAAAGCTAGAGAGCCTGTTGCTGCATAAAACCTCATCTAGATAAAACGGCAAAGATAACGAGAAGTAGAAGCGTCAGAACGCATTGGTTGGCAAGGATATATAACGTAACATATAGCTAAGAAAGAAGGGAGGAAATTTGGATAGACGCTTCAAAAAAAACTCGCCAATAACATAAAACTCCCTAGATTCCGTTCAGGATAACGGCAATCCCACAGGCTTCTAGATAATTATTTTAACCCTCTTCCAACGCAAAATTTCGCGCGTTTTTCACACTTTTCGAAGATCGAAAATATAGACGCGCATGTTTGTTTGGGACTTTTGCAATTTTTAGAAGATTTGGAAGGGTGGGCAGTGCAAATCAGGAACTACAGTAGATGATATCTGTTCATATCTTTGGAATTTTGTAAATTCACCGCGCTAGCCAAACAATGTTTTTCTTATGGCTATCATCAGATTCAACGCTAACCGTCCATCAGGCGACGTGCAGGGGATGAAATAAGCAATTCATATTGATAAACGAGGTGCAAAAGAATTCTTTGAACATCCACACTCTCTCTTCCTTCCTTTTCGATCTTTAGGAAACGCTTTTCTGCAGAAATGATTCTGCGAAATTGGACACACACACAACTGTCGTTACGGTGCGTTGATGATGACTGACAAAAAAGTCGTTGAAAGAAAAAGGGAACGTTAGATCAGAACCCGACCCGAGAT</canonical>
            <polymorphic>AAAAAGGCGCCAAACTGACGGACGGGAAGCCCGAGAGTGGCCCCTTCGCATCGCGCAACGGCTACTTTTTGGGAGAATATGACCAGTTTTGTTGCGTTTCAAAACCGAAAACACTATTTCGCACCATACACACACAAGTCAGCCACCGTGAAAACATTGATGAACCCCGGGTCGACACCGGGGCCCGAGAGATTTGAGATTAAGAATAGAAAAGTGGGCGGAGAGGTAATCCAATTGGTTTTTGACAATAAGACAACAACCCTTCGAAAAACACGGAGGGTTTAAAAGAAAAGCTAGAGAGCCTGTTGCTGCATAAAACCTCATCTAGATAAAACGGCAAAGATAACGAGAAGTAGAAGCGTCAGAACGCATTGGTTGGCAAGGATATATAACGTAACATATAGCTAAGAAAGAAGGGAGGAAATTTGGATAGACGCTTCAAAAAAAACTCGCCAATAACATAAAACTCCCTAGATTCCGTTCAGGATAACGGCAATCCYACAGGCTTCTAGATAATTATTTTAACCCTCTTCCAACGCAAAATTTCGCGCGTTTTTCACACTTTTCGAAGATCGAAAATATAGACGCGCATGTTTGTTTGGGACTTTTGCAATTTTTAGAAGATTTGGAAGGGTGGGCAGTGCAAATCAGGAACTACAGTAGATGATATCTGTTCATATCTTTGGAATTTTGTAAATTCACCGCGCTAGCCAAACAATGTTTTTCTTATGGCTATCATCAGATTCAACGCTAACCGTCCATCAGGCGACGTGCAGGGGATGAAATAAGCAATTCATATTGATAAACGAGGTGCAAAAGAATTCTTTGAACATCCACACTCTCTCTTCCTTCCTTTTCGATCTTTAGGAAACGCTTTTCTGCAGAAATGATTCTGCGAAATTGGACACACACACAACTGTCGTTACGGTGCGTTGATGATGACTGACAAAAAAGTCGTTGAAAGAAAAAGGGAACGTTAGATCAGAACCCGACCCGAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>228 75 74 72 70 69 58 58 57 40 39 39 27 23 17 11 10 7 7 5 2 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>286 75 74 72 70 69 58 57 40 39 39 27 23 17 11 10 7 7 5 2 2 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTAGATAAAACGGCAAAGATAA</pcr_primer_p1>
		<pcr_primer_p2>ATCTTCGAAAAGTGTGAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTAGATAAAACGGCAAAGATAACGAGAAGTAGAAGCGTCAGAACGCATTGGTTGGCAAGGATATATAACGTAACATATAGCTAAGAAAGAAGGGAGGAAATTTGGATAGACGCTTCAAAAAAAACTCGCCAATAACATAAAACTCCCTAGATTCCGTTCAGGATAACGGCAATCCCACAGGCTTCTAGATAATTATTTTAACCCTCTTCCAACGCAAAATTTCGCGCGTTTTTCACACTTTTCGAAGAT</canonical_amplicon>
		<polymorphic_amplicon>TCTAGATAAAACGGCAAAGATAACGAGAAGTAGAAGCGTCAGAACGCATTGGTTGGCAAGGATATATAACGTAACATATAGCTAAGAAAGAAGGGAGGAAATTTGGATAGACGCTTCAAAAAAAACTCGCCAATAACATAAAACTCCCTAGATTCCGTTCAGGATAACGGCAATCCYACAGGCTTCTAGATAATTATTTTAACCCTCTTCCAACGCAAAATTTCGCGCGTTTTTCACACTTTTCGAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16442</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>290486</contig_pos>
        <strand>+</strand>
        <context>ATTGAATAAA[G/T]GAGAGGTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGTATTTGAAAATTTCTGAGAAGAGAACGGACATATGCAAATTGAATAAA</left_flank>
        <right_flank>GAGAGGTTTACACAAGATGAAAAAAAACAAGAGATTTAAAAAAGTGGGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAATTTGTGAATTTCAAATTGATGTAGAATATATTGTATTTGGAATTTTTCAACTTTTCGCTGATTTTAAGTTTCTGAAAGAAAGCAATGAGCATTTGTTCCAAAAAAATATTTTTTCAAAATTTTATAATTTATAACTTCAAGTTGCTAGAGCATTTCCTTTTAGAAGTTTCCCCTAGGTTTCTATAAAATCATTTTTTAGAAATTACATACTCCTCATTTTTGCTCCTCCCTGCCAGTCAATAAACTTTGCATCAAAATCAATCAGCTGCTCAAAGAACCTTGAAATTTCACGAAAAGTATCAGAAGCAAGTGTCTTCTTCTCCAAGAGCGAAACGCAATGAAACTGACGCGGAGAGCTAGGAAACCAATAAAATTGTTAAATTTCATGGGTCAAAGAAATGCTAGCTGCTACTCCTTGATTTTCGTTTGATTGATTATTAGAGAAGTATTTGAAAATTTCTGAGAAGAGAACGGACATATGCAAATTGAATAAATGAGAGGTTTACACAAGATGAAAAAAAACAAGAGATTTAAAAAAGTGGGATTTGGAGAAAAGGTTGAAAGAAGCGACGCCAGATTTGGAGAGGGGGTCACCAAAGATAAAGAAACGGAAGTTAACAGTAGTGATAAGAAAGCCTACCGGCGGTCAATCAACAAACAAGACCCTCCCTTGCGCACCCTCCCCAGGTTGCGTGCTCTCGAAGTGGTTGGCGACGGGAGCCTGAACACATCTGAGGCGCATCGAAAACAACCTCTAAACCTTAACAAACGCTTACCGTGTCGAGCTACTTGTCGGCCCCAAGGACATTTGCTCACCTTTTTCATTCAGTTCGTTTTTTGTCCGATTTTAACACGGTTTTAGTTAGAGATCAATTCGGGTGGAGTTCGGGAAGATCACAAAAAACACGTTTTAATGTGTCAAAAGATTTGGAACTTAGCAATTTTACTTTTAGAACTGATTGCTGAAAATACAGTACTGAGAAAAAAACTGTACA</canonical>
            <polymorphic>TTGAATTTGTGAATTTCAAATTGATGTAGAATATATTGTATTTGGAATTTTTCAACTTTTCGCTGATTTTAAGTTTCTGAAAGAAAGCAATGAGCATTTGTTCCAAAAAAATATTTTTTCAAAATTTTATAATTTATAACTTCAAGTTGCTAGAGCATTTCCTTTTAGAAGTTTCCCCTAGGTTTCTATAAAATCATTTTTTAGAAATTACATACTCCTCATTTTTGCTCCTCCCTGCCAGTCAATAAACTTTGCATCAAAATCAATCAGCTGCTCAAAGAACCTTGAAATTTCACGAAAAGTATCAGAAGCAAGTGTCTTCTTCTCCAAGAGCGAAACGCAATGAAACTGACGCGGAGAGCTAGGAAACCAATAAAATTGTTAAATTTCATGGGTCAAAGAAATGCTAGCTGCTACTCCTTGATTTTCGTTTGATTGATTATTAGAGAAGTATTTGAAAATTTCTGAGAAGAGAACGGACATATGCAAATTGAATAAAKGAGAGGTTTACACAAGATGAAAAAAAACAAGAGATTTAAAAAAGTGGGATTTGGAGAAAAGGTTGAAAGAAGCGACGCCAGATTTGGAGAGGGGGTCACCAAAGATAAAGAAACGGAAGTTAACAGTAGTGATAAGAAAGCCTACCGGCGGTCAATCAACAAACAAGACCCTCCCTTGCGCACCCTCCCCAGGTTGCGTGCTCTCGAAGTGGTTGGCGACGGGAGCCTGAACACATCTGAGGCGCATCGAAAACAACCTCTAAACCTTAACAAACGCTTACCGTGTCGAGCTACTTGTCGGCCCCAAGGACATTTGCTCACCTTTTTCATTCAGTTCGTTTTTTGTCCGATTTTAACACGGTTTTAGTTAGAGATCAATTCGGGTGGAGTTCGGGAAGATCACAAAAAACACGTTTTAATGTGTCAAAAGATTTGGAACTTAGCAATTTTACTTTTAGAACTGATTGCTGAAAATACAGTACTGAGAAAAAAACTGTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAAATGCTAGCTGCTACTC</pcr_primer_p1>
		<pcr_primer_p2>CGGTAGGCTTTCTTATCACTACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGAAATGCTAGCTGCTACTCCTTGATTTTCGTTTGATTGATTATTAGAGAAGTATTTGAAAATTTCTGAGAAGAGAACGGACATATGCAAATTGAATAAATGAGAGGTTTACACAAGATGAAAAAAAACAAGAGATTTAAAAAAGTGGGATTTGGAGAAAAGGTTGAAAGAAGCGACGCCAGATTTGGAGAGGGGGTCACCAAAGATAAAGAAACGGAAGTTAACAGTAGTGATAAGAAAGCCTACCG</canonical_amplicon>
		<polymorphic_amplicon>AAAGAAATGCTAGCTGCTACTCCTTGATTTTCGTTTGATTGATTATTAGAGAAGTATTTGAAAATTTCTGAGAAGAGAACGGACATATGCAAATTGAATAAAKGAGAGGTTTACACAAGATGAAAAAAAACAAGAGATTTAAAAAAGTGGGATTTGGAGAAAAGGTTGAAAGAAGCGACGCCAGATTTGGAGAGGGGGTCACCAAAGATAAAGAAACGGAAGTTAACAGTAGTGATAAGAAAGCCTACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16444</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>306889</contig_pos>
        <strand>+</strand>
        <context>TGTGACTTTG[A/G]CATTGGGATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACGACAAAAAAATTCCTTGAAATAGAAAACAAGTGATTCTGTGACTTTG</left_flank>
        <right_flank>CATTGGGATCTACTCAAGCTCCACAAGCACCTCTCCCTCGTCGACGGTGG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTAACTTGCTATTGACATTTGAATAGCAAAGAGAAAAATAAGCCAATTTTTCAGTAATATTCAAATCACTGAAAAGAAAAAAAAGGAAAAATTTCTCTTTTTCACAAAAAGGGAAAACGACAGAAGATATCTTTTTTTCTTTGGTGCTCCGTCATGAAACGAAAAAAGACACGAACTATCTTATTTTTTCCATCACTTTGTTATTTTTACTCTTCCAATGGTTACTTCTACAAAAATTTATTTTCTACGGGCTTGTAATACTTGAGATGAAATAAAACAGGGGTAGTTGTGAAAATAGGTCCGTGTTTTTTAAATGGAATACAACAGTTTGAGAGGGAAGGGTTTATGGCATAATTATATCATAAATATGGCTTTACGGGTAGAAAAAATGCGAGTGAACTTATCAGTCTCTATACCAGATGAGAGTGGCTTAAAAAATTGTACAAAAACGACAAAAAAATTCCTTGAAATAGAAAACAAGTGATTCTGTGACTTTGACATTGGGATCTACTCAAGCTCCACAAGCACCTCTCCCTCGTCGACGGTGGCTCCGACCTTGACGTTGACGGCCTTGACGCGTCCAGTCTTTCCGGCGTGAAGACTGTTTTGCATCTTCATGGCCTCCATGACGACAAGTTCTTGTCCTTCGGAAACCATGTCTCCTGGCTGAAATTTTTAAATTTTGATTACCAAGTTTTTCAAAATGAAATTTAATCAACTCACCTTAACATTAACGTTCTTGATGGCTCCTGGCATTGGGGAGAGGACGACAGTGGACAAGTCAACCTTGGCCTTCTCCTTCATGTACTGCAAGTACTTGACGGCTTGTTCTGGAAGAACCTGCACCTTGAATGGAGTTCCCTTGTAGAGAACAGTGATCTCTCCGGCGCGCTTTCCAACAATCTGGGTGGTGATGTGCTCTCCGTTGACCTCGATCGAGTTGACTGGGAGCGAGAGGCTCAAGTTTCCAGAAATGTCAATGACCTTTCCTCCGATCG</canonical>
            <polymorphic>ACCTAACTTGCTATTGACATTTGAATAGCAAAGAGAAAAATAAGCCAATTTTTCAGTAATATTCAAATCACTGAAAAGAAAAAAAAGGAAAAATTTCTCTTTTTCACAAAAAGGGAAAACGACAGAAGATATCTTTTTTTCTTTGGTGCTCCGTCATGAAACGAAAAAAGACACGAACTATCTTATTTTTTCCATCACTTTGTTATTTTTACTCTTCCAATGGTTACTTCTACAAAAATTTATTTTCTACGGGCTTGTAATACTTGAGATGAAATAAAACAGGGGTAGTTGTGAAAATAGGTCCGTGTTTTTTAAATGGAATACAACAGTTTGAGAGGGAAGGGTTTATGGCATAATTATATCATAAATATGGCTTTACGGGTAGAAAAAATGCGAGTGAACTTATCAGTCTCTATACCAGATGAGAGTGGCTTAAAAAATTGTACAAAAACGACAAAAAAATTCCTTGAAATAGAAAACAAGTGATTCTGTGACTTTGRCATTGGGATCTACTCAAGCTCCACAAGCACCTCTCCCTCGTCGACGGTGGCTCCGACCTTGACGTTGACGGCCTTGACGCGTCCAGTCTTTCCGGCGTGAAGACTGTTTTGCATCTTCATGGCCTCCATGACGACAAGTTCTTGTCCTTCGGAAACCATGTCTCCTGGCTGAAATTTTTAAATTTTGATTACCAAGTTTTTCAAAATGAAATTTAATCAACTCACCTTAACATTAACGTTCTTGATGGCTCCTGGCATTGGGGAGAGGACGACAGTGGACAAGTCAACCTTGGCCTTCTCCTTCATGTACTGCAAGTACTTGACGGCTTGTTCTGGAAGAACCTGCACCTTGAATGGAGTTCCCTTGTAGAGAACAGTGATCTCTCCGGCGCGCTTTCCAACAATCTGGGTGGTGATGTGCTCTCCGTTGACCTCGATCGAGTTGACTGGGAGCGAGAGGCTCAAGTTTCCAGAAATGTCAATGACCTTTCCTCCGATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTGTACAAAAACGACAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTAAAAATTTCAGCCAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTGTACAAAAACGACAAAAAAATTCCTTGAAATAGAAAACAAGTGATTCTGTGACTTTGACATTGGGATCTACTCAAGCTCCACAAGCACCTCTCCCTCGTCGACGGTGGCTCCGACCTTGACGTTGACGGCCTTGACGCGTCCAGTCTTTCCGGCGTGAAGACTGTTTTGCATCTTCATGGCCTCCATGACGACAAGTTCTTGTCCTTCGGAAACCATGTCTCCTGGCTGAAATTTTTAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTGTACAAAAACGACAAAAAAATTCCTTGAAATAGAAAACAAGTGATTCTGTGACTTTGRCATTGGGATCTACTCAAGCTCCACAAGCACCTCTCCCTCGTCGACGGTGGCTCCGACCTTGACGTTGACGGCCTTGACGCGTCCAGTCTTTCCGGCGTGAAGACTGTTTTGCATCTTCATGGCCTCCATGACGACAAGTTCTTGTCCTTCGGAAACCATGTCTCCTGGCTGAAATTTTTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16445</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>351962</contig_pos>
        <strand>+</strand>
        <context>TCAATTCGTA[A/C]AATTATCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAATCGTTTTCACTATTTTTGAAATTATCCTTGTACAAATTCAATTCGTA</left_flank>
        <right_flank>AATTATCAAATCACTTCTTAAAACGCTCTTTTGTCAGTTATATTAATTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATATTCCGATTTTCAAAACTAAAGAATTTCGAAATATCCCGATTATCAAAGTTTCGGAATTTCGTAGTATTGCGATTTTGATATTCTCAGGATCTTTAAAAATTAAAACTTTATAGTAGAAATTACATTTCCCATCACAAAAATGCCGAAAACGGGTGAAAATTGATCGAACGGTTTCGACAGAGAGCAAAAATATATATAAATACATTCCGTTCGAGACCCACAAGCAAATTTTTCGCGCGCATTCGTCATACCGTAGTTCAAAATCTCTCAAACGTTTCGGAAACGTTCGGTTGGATATTAATTCCAAAATAGTCGGAATATACGGAATTCCGAATTCCGTTCTGAACATCCCTGAATTGATCTATAAATCAAAACTTTTCTAATGATAACAATTAAAGAGCCCATATTCCGATTCTTATTAGGAACGGAGATTAAGAAATTCTGGAATCGTTTTCACTATTTTTGAAATTATCCTTGTACAAATTCAATTCGTAAAATTATCAAATCACTTCTTAAAACGCTCTTTTGTCAGTTATATTAATTTTCACAGGACCCTTAGAACCTTTTCCACGCACATTCCTTTTGGTCCCTTTTTGCATTTTTTACACGACTACTCCTTTTTTATTTTCAAAGAACCAGCGTAGTAAAAAGAAGTGAGTGTTTGTAGTCTCCTCTAATCTACGCTTCGAAAGTCCAAAAAATTAAACTGGTCCCAAATATTCTTTGAAGAAAAGGAACAACAAGTAACTCTATTTGGGCGGACACAACATTGAAAAGTTATGATGGAAAAGGGAAAAAGTAATAGAAAAGAAGTAGTCAAGTATAAGAAAAACGTGAGAAACTTCATGTTATCTCCTGAGTTCCTAAAGCATTGTCCCAAAAAAAAATATATATATATATATATCAATTGTTAGCGATTTTCTGGATAACAAGAACTCGATGTGGGAAAAAAAAGGAAAAAAAAGTCACATGATTTCAAAAAAAATTTGAGCAAA</canonical>
            <polymorphic>ACATATTCCGATTTTCAAAACTAAAGAATTTCGAAATATCCCGATTATCAAAGTTTCGGAATTTCGTAGTATTGCGATTTTGATATTCTCAGGATCTTTAAAAATTAAAACTTTATAGTAGAAATTACATTTCCCATCACAAAAATGCCGAAAACGGGTGAAAATTGATCGAACGGTTTCGACAGAGAGCAAAAATATATATAAATACATTCCGTTCGAGACCCACAAGCAAATTTTTCGCGCGCATTCGTCATACCGTAGTTCAAAATCTCTCAAACGTTTCGGAAACGTTCGGTTGGATATTAATTCCAAAATAGTCGGAATATACGGAATTCCGAATTCCGTTCTGAACATCCCTGAATTGATCTATAAATCAAAACTTTTCTAATGATAACAATTAAAGAGCCCATATTCCGATTCTTATTAGGAACGGAGATTAAGAAATTCTGGAATCGTTTTCACTATTTTTGAAATTATCCTTGTACAAATTCAATTCGTAMAATTATCAAATCACTTCTTAAAACGCTCTTTTGTCAGTTATATTAATTTTCACAGGACCCTTAGAACCTTTTCCACGCACATTCCTTTTGGTCCCTTTTTGCATTTTTTACACGACTACTCCTTTTTTATTTTCAAAGAACCAGCGTAGTAAAAAGAAGTGAGTGTTTGTAGTCTCCTCTAATCTACGCTTCGAAAGTCCAAAAAATTAAACTGGTCCCAAATATTCTTTGAAGAAAAGGAACAACAAGTAACTCTATTTGGGCGGACACAACATTGAAAAGTTATGATGGAAAAGGGAAAAAGTAATAGAAAAGAAGTAGTCAAGTATAAGAAAAACGTGAGAAACTTCATGTTATCTCCTGAGTTCCTAAAGCATTGTCCCAAAAAAAAATATATATATATATATATCAATTGTTAGCGATTTTCTGGATAACAAGAACTCGATGTGGGAAAAAAAAGGAAAAAAAAGTCACATGATTTCAAAAAAAATTTGAGCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTCTTATTAGGAACGGAGATT</pcr_primer_p1>
		<pcr_primer_p2>ACTTCTTTTTACTACGCTGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GATTCTTATTAGGAACGGAGATTAAGAAATTCTGGAATCGTTTTCACTATTTTTGAAATTATCCTTGTACAAATTCAATTCGTAAAATTATCAAATCACTTCTTAAAACGCTCTTTTGTCAGTTATATTAATTTTCACAGGACCCTTAGAACCTTTTCCACGCACATTCCTTTTGGTCCCTTTTTGCATTTTTTACACGACTACTCCTTTTTTATTTTCAAAGAACCAGCGTAGTAAAAAGAAGT</canonical_amplicon>
		<polymorphic_amplicon>GATTCTTATTAGGAACGGAGATTAAGAAATTCTGGAATCGTTTTCACTATTTTTGAAATTATCCTTGTACAAATTCAATTCGTAMAATTATCAAATCACTTCTTAAAACGCTCTTTTGTCAGTTATATTAATTTTCACAGGACCCTTAGAACCTTTTCCACGCACATTCCTTTTGGTCCCTTTTTGCATTTTTTACACGACTACTCCTTTTTTATTTTCAAAGAACCAGCGTAGTAAAAAGAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16494</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>353895</contig_pos>
        <strand></strand>
        <context>TTCgaaaagg[A/G]tatggaaacg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACTTTGCGATTGATATCTCAGTATCAACAAAATATATATTTCGAAAAGG</left_flank>
        <right_flank>TATGGAAACGAAAAAAAAACGAAAGGGAGGAAAAGAAATGGATAGAAACC</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGTACATAATATTATAACAAAAGAATGCGAATTTTGTATTCCGATCAGACATTCGATAACCTAAATTTTTATTGAAAATGATCTCTTGCTCAACATAGTATTTCAGTGAAAATCTCAAGGAATTCAGGAACCACTGAACAATATATTCTTTAAAGATTTCTTTTCCCAGCATCCCCCCCCCCCAACACTAAGAGTACATCAGGATGGGCAGACAGGAAACAAGAAAATATGGAATAAATAAGGATGTGGTCTACTAGCAAAAACTTTTTTCACAAAACGGGAGCTTGTTAGAAAATATGAGCAACAAGAAATCAAGTAGTAGAAGTGCGACGCCGTTGTCACTCCAAAAAGGTGCACGAATCCAATTAGGGTATATATCCATCGGGTGGAGTCAAAAGTCTGATTTTTGAGCAAAAATATATAAATTTAGGCAGAAACAGAAATATGACTTTGCGATTGATATCTCAGTATCAACAAAATATATATTTCGAAAAGGATATGGAAACGAAAAAAAAACGAAAGGGAGGAAAAGAAATGGATAGAAACCAATTTTGCGATACTGAAGAACCCTTAGATTTTTGACACCATTCGATTTATGTGAAAATTGTGTGTTCTGGCCGGAAAAAAAAACAAAACAAGGAAAAACGAGAAAAAGGAAGATCCAAAAAATATAGGGAAAGGGAAGCCATGTAAAATCGATAATTGTTACTTTCTAGGACCACAAAAAGTGTCACTAAATGAACTTCAAGCTATTTGCCGATTTCTGGACTACTGTATCCCGGAAAGAAATTGGACAAAATTCGAATGTAAACGAAAGAAACACACTTAAAAAGTGAGTTTGAGTCATTTGCACTTTCAAACTATAATTCTATAAATCGAAGCCACTATAACTCTGAAATAACTACAAAAAATTAGATTAAAACTGAAAGTTTGATCGAATAACCAAATTTCAGGCTGCGGAAATTCCTTAGAACATCGGTTTTTTAAAATATTATTA</canonical>
            <polymorphic>AATTGTACATAATATTATAACAAAAGAATGCGAATTTTGTATTCCGATCAGACATTCGATAACCTAAATTTTTATTGAAAATGATCTCTTGCTCAACATAGTATTTCAGTGAAAATCTCAAGGAATTCAGGAACCACTGAACAATATATTCTTTAAAGATTTCTTTTCCCAGCATCCCCCCCCCCCAACACTAAGAGTACATCAGGATGGGCAGACAGGAAACAAGAAAATATGGAATAAATAAGGATGTGGTCTACTAGCAAAAACTTTTTTCACAAAACGGGAGCTTGTTAGAAAATATGAGCAACAAGAAATCAAGTAGTAGAAGTGCGACGCCGTTGTCACTCCAAAAAGGTGCACGAATCCAATTAGGGTATATATCCATCGGGTGGAGTCAAAAGTCTGATTTTTGAGCAAAAATATATAAATTTAGGCAGAAACAGAAATATGACTTTGCGATTGATATCTCAGTATCAACAAAATATATATTTCGAAAAGGRTATGGAAACGAAAAAAAAACGAAAGGGAGGAAAAGAAATGGATAGAAACCAATTTTGCGATACTGAAGAACCCTTAGATTTTTGACACCATTCGATTTATGTGAAAATTGTGTGTTCTGGCCGGAAAAAAAAACAAAACAAGGAAAAACGAGAAAAAGGAAGATCCAAAAAATATAGGGAAAGGGAAGCCATGTAAAATCGATAATTGTTACTTTCTAGGACCACAAAAAGTGTCACTAAATGAACTTCAAGCTATTTGCCGATTTCTGGACTACTGTATCCCGGAAAGAAATTGGACAAAATTCGAATGTAAACGAAAGAAACACACTTAAAAAGTGAGTTTGAGTCATTTGCACTTTCAAACTATAATTCTATAAATCGAAGCCACTATAACTCTGAAATAACTACAAAAAATTAGATTAAAACTGAAAGTTTGATCGAATAACCAAATTTCAGGCTGCGGAAATTCCTTAGAACATCGGTTTTTTAAAATATTATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATATGACTTTGCGATTGATA</pcr_primer_p1>
		<pcr_primer_p2>GCTTCCCTTTCCCTATATTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAATATGACTTTGCGATTGATATCTCAGTATCAACAAAATATATATTTCGAAAAGGATATGGAAACGAAAAAAAAACGAAAGGGAGGAAAAGAAATGGATAGAAACCAATTTTGCGATACTGAAGAACCCTTAGATTTTTGACACCATTCGATTTATGTGAAAATTGTGTGTTCTGGCCGGAAAAAAAAACAAAACAAGGAAAAACGAGAAAAAGGAAGATCCAAAAAATATAGGGAAAGGGAAGC</canonical_amplicon>
		<polymorphic_amplicon>GAAATATGACTTTGCGATTGATATCTCAGTATCAACAAAATATATATTTCGAAAAGGRTATGGAAACGAAAAAAAAACGAAAGGGAGGAAAAGAAATGGATAGAAACCAATTTTGCGATACTGAAGAACCCTTAGATTTTTGACACCATTCGATTTATGTGAAAATTGTGTGTTCTGGCCGGAAAAAAAAACAAAACAAGGAAAAACGAGAAAAAGGAAGATCCAAAAAATATAGGGAAAGGGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16502</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>492782</contig_pos>
        <strand>+</strand>
        <context>TTTCCTGATT[G/T]AATAAAGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCGGTAACAAAATCTCAAATATCACTTACACCTATTATTTTTTCCTGATT</left_flank>
        <right_flank>AATAAAGTTTTCATTTCCAATCTCCTGTGCAAAACAAAAATCTCTTCATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTATTGTCATAGCTTTATTTCCCAAATTTCTTTCCTTCTCTTCTCGCCGTGTCCTCCAATGCTCCAGGATTCAAAGTCCCTTATTTCTATTCCAGTGATAATTTATTTTCCAAATTTTTTAAATGTAGCTCTTCTCTGTCTCCCTTATTGTATCTACTCTTCCGGGTACACTGCCTTCATTTTGTTCAACCTTTTTCCTTCTTTCTCCCCTCACATCCGCCCATTATCTTTTCAATAGACGTTGCTTTTGTGTGGAATTTTACACCATCAATAAGCAAAACGACGTTGGTTTCTTTAATTGCTCCTCACCTGCTTGTCCCACCATATTTTCGAATTTGTGCGGGATCGGCGTTTTCTATATACTTCTTCTTGTGATCTAATTTGCACTGTAGGGGTTTCTAAATCATTCTGACATATTTCTAATTGCCTTTCATTGTCTCTAAACTCGCGGTAACAAAATCTCAAATATCACTTACACCTATTATTTTTTCCTGATTTAATAAAGTTTTCATTTCCAATCTCCTGTGCAAAACAAAAATCTCTTCATGCGTTTCCTTGTGACTTCCCAAAACTAATTACATGGTCCGCATTGACTTTTGTGGGGTCATCAATTGCATAACAATAGAGCACATCCACAAGTTTATTCTATGATGTGCTCCGTGTTTGCCGACCAATTGAGAATCACTATTGTTACGTGAAAAGTAGAACTAGCTGCTTGCCTTGTTATATGAGTTACTTTGTTGTGCATACATCAATGATAGACAGGAAGAATTTGTGCAAGTTTTGCCATGCTTCGTTGGGTAGGTTTTTTTGAAAAAAGAGATTGCAGAGTGCAAGGTGTCAATTCAGACGGATTTCCGGGCAACCAAAAAGGAGGAAACAGGAGGAAAGAAAACAAGGAAAAAATATATCGCCCCGCAACATGTTCAATTAATTATCTTAAAGAAGGCACGCGACCGCTTCAAAGGCACCGCCACCTACATGATTGCTTACTATCT</canonical>
            <polymorphic>TTTTATTGTCATAGCTTTATTTCCCAAATTTCTTTCCTTCTCTTCTCGCCGTGTCCTCCAATGCTCCAGGATTCAAAGTCCCTTATTTCTATTCCAGTGATAATTTATTTTCCAAATTTTTTAAATGTAGCTCTTCTCTGTCTCCCTTATTGTATCTACTCTTCCGGGTACACTGCCTTCATTTTGTTCAACCTTTTTCCTTCTTTCTCCCCTCACATCCGCCCATTATCTTTTCAATAGACGTTGCTTTTGTGTGGAATTTTACACCATCAATAAGCAAAACGACGTTGGTTTCTTTAATTGCTCCTCACCTGCTTGTCCCACCATATTTTCGAATTTGTGCGGGATCGGCGTTTTCTATATACTTCTTCTTGTGATCTAATTTGCACTGTAGGGGTTTCTAAATCATTCTGACATATTTCTAATTGCCTTTCATTGTCTCTAAACTCGCGGTAACAAAATCTCAAATATCACTTACACCTATTATTTTTTCCTGATTKAATAAAGTTTTCATTTCCAATCTCCTGTGCAAAACAAAAATCTCTTCATGCGTTTCCTTGTGACTTCCCAAAACTAATTACATGGTCCGCATTGACTTTTGTGGGGTCATCAATTGCATAACAATAGAGCACATCCACAAGTTTATTCTATGATGTGCTCCGTGTTTGCCGACCAATTGAGAATCACTATTGTTACGTGAAAAGTAGAACTAGCTGCTTGCCTTGTTATATGAGTTACTTTGTTGTGCATACATCAATGATAGACAGGAAGAATTTGTGCAAGTTTTGCCATGCTTCGTTGGGTAGGTTTTTTTGAAAAAAGAGATTGCAGAGTGCAAGGTGTCAATTCAGACGGATTTCCGGGCAACCAAAAAGGAGGAAACAGGAGGAAAGAAAACAAGGAAAAAATATATCGCCCCGCAACATGTTCAATTAATTATCTTAAAGAAGGCACGCGACCGCTTCAAAGGCACCGCCACCTACATGATTGCTTACTATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>434 202 176 121 58 9</canonical_bands>
                <polymorphic_bands>636 176 121 58 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGACATATTTCTAATTGCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>GGAGCACATCATAGAATAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGACATATTTCTAATTGCCTTTCATTGTCTCTAAACTCGCGGTAACAAAATCTCAAATATCACTTACACCTATTATTTTTTCCTGATTTAATAAAGTTTTCATTTCCAATCTCCTGTGCAAAACAAAAATCTCTTCATGCGTTTCCTTGTGACTTCCCAAAACTAATTACATGGTCCGCATTGACTTTTGTGGGGTCATCAATTGCATAACAATAGAGCACATCCACAAGTTTATTCTATGATGTGCTCC</canonical_amplicon>
		<polymorphic_amplicon>TGACATATTTCTAATTGCCTTTCATTGTCTCTAAACTCGCGGTAACAAAATCTCAAATATCACTTACACCTATTATTTTTTCCTGATTKAATAAAGTTTTCATTTCCAATCTCCTGTGCAAAACAAAAATCTCTTCATGCGTTTCCTTGTGACTTCCCAAAACTAATTACATGGTCCGCATTGACTTTTGTGGGGTCATCAATTGCATAACAATAGAGCACATCCACAAGTTTATTCTATGATGTGCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16503</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>497174</contig_pos>
        <strand></strand>
        <context>aaacatattt[C/T]atctgwtgat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGCGAGGTTCCATAAATCGAAACGGAAGACAATAATATGAAACATATTT</left_flank>
        <right_flank>ATCTGTTGATAGATTTTCGTATCTTATATAAAAATCGAGATAATTGAACT</right_flank>
        <qual_score>46</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCCGGAGCCCACACTGTCCTGTTTCAGTTGATTTACCGTCATTCCTAGGCAAGATATCAAAAAATATGTTAGCTGACAAAACACTTCTGACATTATAACAAACAATTTCAAAAGGTCACTCTATATTGTTTTGAGCTCAAATATCTCATTTTTTATAAGAAATATCAAACATTTGTCAACTAATGGAATGTTGGTGATATTGTCGAATTGAAAAAAAAACTGGGACCTGAGGATTTGGAAACCTCCTCTTTTTTTATCTGCGAAAAAGCGCGACAAAATTGTAATATTTCAGACTTTTGCCTCGTTCGAGCTACTTTCGCAACTAAGTTCGGTTTTAATGAAAAACAGATTCTAGAGATGCTAGCGATCATTTCCATGCCAAGAAATCTAAGTTTTGTTCAGAAAAAAATCACAGAAGTAAGTTTCGTTTACTACTGCAGTGATTTTTGGGCGAGGTTCCATAAATCGAAACGGAAGACAATAATATGAAACATATTTCATCTGTTGATAGATTTTCGTATCTTATATAAAAATCGAGATAATTGAACTCAAAGTTATAAAGTGGCTTTCTATTAAAGTATTCACGGTATATGAGATTTCTGATGGATGCAAAAGCAAGAAACCATAAACCCACAGTCTTATGTCCCTTCATAGTTTCTAGTTATAACCTGATGTCCCATAATTTTGTTAAGCTGTTCCAATGATCTCTTCTTCTTTTTTCTTTCATCATTTCGTACACCATTAGGGACCCCTTCTGAGAAGGTCAACGTTGGGTCAAAATGGGTGCAGACATAACAAAAAACTAATTTCCCTTTTTTCAGGCTGCTCAACTCTATGCGAAGTTTGTCCAAAAGCACCCATCGACAAATGTTAAGGTTAGTTCAAAACACAAAACAATTAAATTGAAATCAACCGAAATATCCGTGATAGAGATTGAAGCCAAGAGAGTTTCATTTCTTAAATTGAGCCTTGTTTTTGTGGTTTTCTGCCTAAGGTAAT</canonical>
            <polymorphic>TCCCGGAGCCCACACTGTCCTGTTTCAGTTGATTTACCGTCATTCCTAGGCAAGATATCAAAAAATATGTTAGCTGACAAAACACTTCTGACATTATAACAAACAATTTCAAAAGGTCACTCTATATTGTTTTGAGCTCAAATATCTCATTTTTTATAAGAAATATCAAACATTTGTCAACTAATGGAATGTTGGTGATATTGTCGAATTGAAAAAAAAACTGGGACCTGAGGATTTGGAAACCTCCTCTTTTTTTATCTGCGAAAAAGCGCGACAAAATTGTAATATTTCAGACTTTTGCCTCGTTCGAGCTACTTTCGCAACTAAGTTCGGTTTTAATGAAAAACAGATTCTAGAGATGCTAGCGATCATTTCCATGCCAAGAAATCTAAGTTTTGTTCAGAAAAAAATCACAGAAGTAAGTTTCGTTTACTACTGCAGTGATTTTTGGGCGAGGTTCCATAAATCGAAACGGAAGACAATAATATGAAACATATTTYATCTGTTGATAGATTTTCGTATCTTATATAAAAATCGAGATAATTGAACTCAAAGTTATAAAGTGGCTTTCTATTAAAGTATTCACGGTATATGAGATTTCTGATGGATGCAAAAGCAAGAAACCATAAACCCACAGTCTTATGTCCCTTCATAGTTTCTAGTTATAACCTGATGTCCCATAATTTTGTTAAGCTGTTCCAATGATCTCTTCTTCTTTTTTCTTTCATCATTTCGTACACCATTAGGGACCCCTTCTGAGAAGGTCAACGTTGGGTCAAAATGGGTGCAGACATAACAAAAAACTAATTTCCCTTTTTTCAGGCTGCTCAACTCTATGCGAAGTTTGTCCAAAAGCACCCATCGACAAATGTTAAGGTTAGTTCAAAACACAAAACAATTAAATTGAAATCAACCGAAATATCCGTGATAGAGATTGAAGCCAAGAGAGTTTCATTTCTTAAATTGAGCCTTGTTTTTGTGGTTTTCTGCCTAAGGTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCCAGTGTGAACCTATTATT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGCATCCATCAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>836</pcr_amplicon_size>
		<canonical_amplicon>TCATCTGTTGATAGATTTTCGTATCTTATATAAAAATCGAGATAATTGAACTCAAAGTTATAAAGTGGCTTTCTATTAAAGTATTCACGGTATATGAGATTTCTGATGGATGCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>TYATCTGTTGATAGATTTTCGTATCTTATATAAAAATCGAGATAATTGAACTCAAAGTTATAAAGTGGCTTTCTATTAAAGTATTCACGGTATATGAGATTTCTGATGGATGCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16504</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>497180</contig_pos>
        <strand></strand>
        <context>atttyatctg[T/A]tgatagattt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GGTTCCATAAATCGAAACGGAAGACAATAATATGAAACATATTTCATCTG</left_flank>
        <right_flank>TGATAGATTTTCGTATCTTATATAAAAATCGAGATAATTGAACTCAAAGT</right_flank>
        <qual_score>47</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCCACACTGTCCTGTTTCAGTTGATTTACCGTCATTCCTAGGCAAGATATCAAAAAATATGTTAGCTGACAAAACACTTCTGACATTATAACAAACAATTTCAAAAGGTCACTCTATATTGTTTTGAGCTCAAATATCTCATTTTTTATAAGAAATATCAAACATTTGTCAACTAATGGAATGTTGGTGATATTGTCGAATTGAAAAAAAAACTGGGACCTGAGGATTTGGAAACCTCCTCTTTTTTTATCTGCGAAAAAGCGCGACAAAATTGTAATATTTCAGACTTTTGCCTCGTTCGAGCTACTTTCGCAACTAAGTTCGGTTTTAATGAAAAACAGATTCTAGAGATGCTAGCGATCATTTCCATGCCAAGAAATCTAAGTTTTGTTCAGAAAAAAATCACAGAAGTAAGTTTCGTTTACTACTGCAGTGATTTTTGGGCGAGGTTCCATAAATCGAAACGGAAGACAATAATATGAAACATATTTCATCTGTTGATAGATTTTCGTATCTTATATAAAAATCGAGATAATTGAACTCAAAGTTATAAAGTGGCTTTCTATTAAAGTATTCACGGTATATGAGATTTCTGATGGATGCAAAAGCAAGAAACCATAAACCCACAGTCTTATGTCCCTTCATAGTTTCTAGTTATAACCTGATGTCCCATAATTTTGTTAAGCTGTTCCAATGATCTCTTCTTCTTTTTTCTTTCATCATTTCGTACACCATTAGGGACCCCTTCTGAGAAGGTCAACGTTGGGTCAAAATGGGTGCAGACATAACAAAAAACTAATTTCCCTTTTTTCAGGCTGCTCAACTCTATGCGAAGTTTGTCCAAAAGCACCCATCGACAAATGTTAAGGTTAGTTCAAAACACAAAACAATTAAATTGAAATCAACCGAAATATCCGTGATAGAGATTGAAGCCAAGAGAGTTTCATTTCTTAAATTGAGCCTTGTTTTTGTGGTTTTCTGCCTAAGGTAATTGGTCT</canonical>
            <polymorphic>AGCCCACACTGTCCTGTTTCAGTTGATTTACCGTCATTCCTAGGCAAGATATCAAAAAATATGTTAGCTGACAAAACACTTCTGACATTATAACAAACAATTTCAAAAGGTCACTCTATATTGTTTTGAGCTCAAATATCTCATTTTTTATAAGAAATATCAAACATTTGTCAACTAATGGAATGTTGGTGATATTGTCGAATTGAAAAAAAAACTGGGACCTGAGGATTTGGAAACCTCCTCTTTTTTTATCTGCGAAAAAGCGCGACAAAATTGTAATATTTCAGACTTTTGCCTCGTTCGAGCTACTTTCGCAACTAAGTTCGGTTTTAATGAAAAACAGATTCTAGAGATGCTAGCGATCATTTCCATGCCAAGAAATCTAAGTTTTGTTCAGAAAAAAATCACAGAAGTAAGTTTCGTTTACTACTGCAGTGATTTTTGGGCGAGGTTCCATAAATCGAAACGGAAGACAATAATATGAAACATATTTCATCTGWTGATAGATTTTCGTATCTTATATAAAAATCGAGATAATTGAACTCAAAGTTATAAAGTGGCTTTCTATTAAAGTATTCACGGTATATGAGATTTCTGATGGATGCAAAAGCAAGAAACCATAAACCCACAGTCTTATGTCCCTTCATAGTTTCTAGTTATAACCTGATGTCCCATAATTTTGTTAAGCTGTTCCAATGATCTCTTCTTCTTTTTTCTTTCATCATTTCGTACACCATTAGGGACCCCTTCTGAGAAGGTCAACGTTGGGTCAAAATGGGTGCAGACATAACAAAAAACTAATTTCCCTTTTTTCAGGCTGCTCAACTCTATGCGAAGTTTGTCCAAAAGCACCCATCGACAAATGTTAAGGTTAGTTCAAAACACAAAACAATTAAATTGAAATCAACCGAAATATCCGTGATAGAGATTGAAGCCAAGAGAGTTTCATTTCTTAAATTGAGCCTTGTTTTTGTGGTTTTCTGCCTAAGGTAATTGGTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCCAGTGTGAACCTATTATT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGCATCCATCAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>836</pcr_amplicon_size>
		<canonical_amplicon>GTTGATAGATTTTCGTATCTTATATAAAAATCGAGATAATTGAACTCAAAGTTATAAAGTGGCTTTCTATTAAAGTATTCACGGTATATGAGATTTCTGATGGATGCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GWTGATAGATTTTCGTATCTTATATAAAAATCGAGATAATTGAACTCAAAGTTATAAAGTGGCTTTCTATTAAAGTATTCACGGTATATGAGATTTCTGATGGATGCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16507</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>497538</contig_pos>
        <strand>+</strand>
        <context>AGCACCCATC[C/G]ACAAATGTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTTTCAGGCTGCTCAACTCTATGCGAAGTTTGTCCAAAAGCACCCATC</left_flank>
        <right_flank>ACAAATGTTAAGGTTAGTTCAAAACACAAAACAATTAAATTGAAATCAAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGATCATTTCCATGCCAAGAAATCTAAGTTTTGTTCAGAAAAAAATCACAGAAGTAAGTTTCGTTTACTACTGCAGTGATTTTTGGGCGAGGTTCCATAAATCGAAACGGAAGACAATAATATGAAACATATTTCATCTGTTGATAGATTTTCGTATCTTATATAAAAATCGAGATAATTGAACTCAAAGTTATAAAGTGGCTTTCTATTAAAGTATTCACGGTATATGAGATTTCTGATGGATGCAAAAGCAAGAAACCATAAACCCACAGTCTTATGTCCCTTCATAGTTTCTAGTTATAACCTGATGTCCCATAATTTTGTTAAGCTGTTCCAATGATCTCTTCTTCTTTTTTCTTTCATCATTTCGTACACCATTAGGGACCCCTTCTGAGAAGGTCAACGTTGGGTCAAAATGGGTGCAGACATAACAAAAAACTAATTTCCCTTTTTTCAGGCTGCTCAACTCTATGCGAAGTTTGTCCAAAAGCACCCATCGACAAATGTTAAGGTTAGTTCAAAACACAAAACAATTAAATTGAAATCAACCGAAATATCCGTGATAGAGATTGAAGCCAAGAGAGTTTCATTTCTTAAATTGAGCCTTGTTTTTGTGGTTTTCTGCCTAAGGTAATTGGTCTTATCTACCAGTCGACCCTCAGACGGGGTATCCCATTACTCGAATGAGTAAAAGAAGCAGAAAAGGAAGAGACGATTTCTGGGAAGAAACTCTTCAGAAGAATAGTGGAGGAAAACGATGTTGCAACTCTTCATTTTCTTTTTTCCTGTTAGCGTTTCAATTTGATTAGCTACTCATTTCGTGTCTCAAAAGGACAATTGATTCATTTCCGTTTTTAACTCTTGGTCTCGGAAATATAGTATAGTAGGTCTACCCATCAAAAACCTTGAGTTCCAATTTTTCGACGGAAGTCAACTACTCAACACTCCTAATGATATAGTCGCCAGTTTTCGACCCATAAATCTTGACCACTTTCTCTC</canonical>
            <polymorphic>GCGATCATTTCCATGCCAAGAAATCTAAGTTTTGTTCAGAAAAAAATCACAGAAGTAAGTTTCGTTTACTACTGCAGTGATTTTTGGGCGAGGTTCCATAAATCGAAACGGAAGACAATAATATGAAACATATTTCATCTGTTGATAGATTTTCGTATCTTATATAAAAATCGAGATAATTGAACTCAAAGTTATAAAGTGGCTTTCTATTAAAGTATTCACGGTATATGAGATTTCTGATGGATGCAAAAGCAAGAAACCATAAACCCACAGTCTTATGTCCCTTCATAGTTTCTAGTTATAACCTGATGTCCCATAATTTTGTTAAGCTGTTCCAATGATCTCTTCTTCTTTTTTCTTTCATCATTTCGTACACCATTAGGGACCCCTTCTGAGAAGGTCAACGTTGGGTCAAAATGGGTGCAGACATAACAAAAAACTAATTTCCCTTTTTTCAGGCTGCTCAACTCTATGCGAAGTTTGTCCAAAAGCACCCATCSACAAATGTTAAGGTTAGTTCAAAACACAAAACAATTAAATTGAAATCAACCGAAATATCCGTGATAGAGATTGAAGCCAAGAGAGTTTCATTTCTTAAATTGAGCCTTGTTTTTGTGGTTTTCTGCCTAAGGTAATTGGTCTTATCTACCAGTCGACCCTCAGACGGGGTATCCCATTACTCGAATGAGTAAAAGAAGCAGAAAAGGAAGAGACGATTTCTGGGAAGAAACTCTTCAGAAGAATAGTGGAGGAAAACGATGTTGCAACTCTTCATTTTCTTTTTTCCTGTTAGCGTTTCAATTTGATTAGCTACTCATTTCGTGTCTCAAAAGGACAATTGATTCATTTCCGTTTTTAACTCTTGGTCTCGGAAATATAGTATAGTAGGTCTACCCATCAAAAACCTTGAGTTCCAATTTTTCGACGGAAGTCAACTACTCAACACTCCTAATGATATAGTCGCCAGTTTTCGACCCATAAATCTTGACCACTTTCTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>327 241 155 104 68 49 28 28</canonical_bands>
                <polymorphic_bands>482 241 104 68 49 28 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAGCTGTTCCAATGATCTCTT</pcr_primer_p1>
		<pcr_primer_p2>TTCAATCTCTATCACGGATATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAGCTGTTCCAATGATCTCTTCTTCTTTTTTCTTTCATCATTTCGTACACCATTAGGGACCCCTTCTGAGAAGGTCAACGTTGGGTCAAAATGGGTGCAGACATAACAAAAAACTAATTTCCCTTTTTTCAGGCTGCTCAACTCTATGCGAAGTTTGTCCAAAAGCACCCATCGACAAATGTTAAGGTTAGTTCAAAACACAAAACAATTAAATTGAAATCAACCGAAATATCCGTGATAGAGATTGAA</canonical_amplicon>
		<polymorphic_amplicon>TAAGCTGTTCCAATGATCTCTTCTTCTTTTTTCTTTCATCATTTCGTACACCATTAGGGACCCCTTCTGAGAAGGTCAACGTTGGGTCAAAATGGGTGCAGACATAACAAAAAACTAATTTCCCTTTTTTCAGGCTGCTCAACTCTATGCGAAGTTTGTCCAAAAGCACCCATCSACAAATGTTAAGGTTAGTTCAAAACACAAAACAATTAAATTGAAATCAACCGAAATATCCGTGATAGAGATTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16508</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>524666</contig_pos>
        <strand>+</strand>
        <context>AGAAGCATTC[A/T]GTTTTTTATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGATTTCAAAAGATTATGAGAAACGGAAAACAAATTTGGAAGAAGCATTC</left_flank>
        <right_flank>GTTTTTTATATGACGTCGTATGTATTTTTCTACATGGAAAAAGATAGCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACGCGATCGAAATTGTTCGGGATAAAGTGAAACGAGTGAGAGATAAAATGTGTGTCAGAAACGCAGACGCCAAACAGAAAGACTTTTGGACGGCATGTGTCTCTATTGATTTGCTATTATTGCCTGATTTGCCGGTGAAAAGGGAGAAAAAATTCCTTTAGATATTCTTTGAAATGCGAGGAGAAAATATGTTATACCGGAACCAGCACTTTTTTAAATCGCAAGAAGCCCACGATTACATATTAATCTTTAAACAAAAAACAAGAAGAGAAACGAGAAAAAATCACACCTAGAAATTTCTCCATTCCATTTAGACGTTTTTAACAAAAACATACAGAAAAAGAGTAAGAACTCAATGTTCAAACATCAAAAAAGAACCAAAGATTATGCGGAACAACACACACAGGCCAAGTTCAAATTGTTCTGTTGTGTTTTTTTTTGTTTTGAGATTTCAAAAGATTATGAGAAACGGAAAACAAATTTGGAAGAAGCATTCAGTTTTTTATATGACGTCGTATGTATTTTTCTACATGGAAAAAGATAGCAGAGCTTTGGAAAAATGAATTTCACAAGAAAAAAACTAGACTATATCATGAAAATCTGGAAAAAAATAGCCCATTTGTTTTTTTTCATTGATTCACACAATTTAACTGTGTCAAGCAGGGCTGGACAAAATCAGAACTATTCCGACAGATCGGATATCATTAATAGATTTTGGCTGACCACAGTTTTGAACTGTGACTCATTGTAGGCATATTTTTCACGTTTCATTCGTTTGCAAAAACAACGATTTGATATTGGAATACAAAAAAACATATATTGGGATTCATTACAAGTAAAAAAAAGATAAAGAAATAAAAAAAGGTAATTATCGTGGGTAATAGGAGAAAACACATTTTAACATTATGCAATACGACAAAAAAGACAATACGATAGGATGTAAGATGAAATAAAAATTTCCACGAATTGGTAGTTATTTCGAAAAACTCCTAACTAT</canonical>
            <polymorphic>AAAACGCGATCGAAATTGTTCGGGATAAAGTGAAACGAGTGAGAGATAAAATGTGTGTCAGAAACGCAGACGCCAAACAGAAAGACTTTTGGACGGCATGTGTCTCTATTGATTTGCTATTATTGCCTGATTTGCCGGTGAAAAGGGAGAAAAAATTCCTTTAGATATTCTTTGAAATGCGAGGAGAAAATATGTTATACCGGAACCAGCACTTTTTTAAATCGCAAGAAGCCCACGATTACATATTAATCTTTAAACAAAAAACAAGAAGAGAAACGAGAAAAAATCACACCTAGAAATTTCTCCATTCCATTTAGACGTTTTTAACAAAAACATACAGAAAAAGAGTAAGAACTCAATGTTCAAACATCAAAAAAGAACCAAAGATTATGCGGAACAACACACACAGGCCAAGTTCAAATTGTTCTGTTGTGTTTTTTTTTGTTTTGAGATTTCAAAAGATTATGAGAAACGGAAAACAAATTTGGAAGAAGCATTCWGTTTTTTATATGACGTCGTATGTATTTTTCTACATGGAAAAAGATAGCAGAGCTTTGGAAAAATGAATTTCACAAGAAAAAAACTAGACTATATCATGAAAATCTGGAAAAAAATAGCCCATTTGTTTTTTTTCATTGATTCACACAATTTAACTGTGTCAAGCAGGGCTGGACAAAATCAGAACTATTCCGACAGATCGGATATCATTAATAGATTTTGGCTGACCACAGTTTTGAACTGTGACTCATTGTAGGCATATTTTTCACGTTTCATTCGTTTGCAAAAACAACGATTTGATATTGGAATACAAAAAAACATATATTGGGATTCATTACAAGTAAAAAAAAGATAAAGAAATAAAAAAAGGTAATTATCGTGGGTAATAGGAGAAAACACATTTTAACATTATGCAATACGACAAAAAAGACAATACGATAGGATGTAAGATGAAATAAAAATTTCCACGAATTGGTAGTTATTTCGAAAAACTCCTAACTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTCAAATTGTTCTGTTGTGT</pcr_primer_p1>
		<pcr_primer_p2>CAGTTAAATTGTGTGAATCAATG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAGTTCAAATTGTTCTGTTGTGTTTTTTTTTGTTTTGAGATTTCAAAAGATTATGAGAAACGGAAAACAAATTTGGAAGAAGCATTCAGTTTTTTATATGACGTCGTATGTATTTTTCTACATGGAAAAAGATAGCAGAGCTTTGGAAAAATGAATTTCACAAGAAAAAAACTAGACTATATCATGAAAATCTGGAAAAAAATAGCCCATTTGTTTTTTTTCATTGATTCACACAATTTAACTG</canonical_amplicon>
		<polymorphic_amplicon>AAGTTCAAATTGTTCTGTTGTGTTTTTTTTTGTTTTGAGATTTCAAAAGATTATGAGAAACGGAAAACAAATTTGGAAGAAGCATTCWGTTTTTTATATGACGTCGTATGTATTTTTCTACATGGAAAAAGATAGCAGAGCTTTGGAAAAATGAATTTCACAAGAAAAAAACTAGACTATATCATGAAAATCTGGAAAAAAATAGCCCATTTGTTTTTTTTCATTGATTCACACAATTTAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16509</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>526291</contig_pos>
        <strand>+</strand>
        <context>TGGCGTTCCA[C/T]AATTTTTATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCAGATACGTTCAACGGAAAATAATCATTTTTAGTCGTCTGGCGTTCCA</left_flank>
        <right_flank>AATTTTTATCAAAACTTCTCTCCGACCCTGCTTAGGTGAAATATCAACAA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCTTGTTTCCCTTGAAAATGACGTAAAACAAAAGGAATAGTGCTATTGGGTTGAACTACTTCAACACATTCTGCCTGATAGGCTTTAGAATTCGGACTGAATGGTTCTGTGTATCCCAACGCGTAAAACATAATGTATTTCAAGTTTGGAGATTCTGAGAAAAAGTGTTCAAGGTTGGCGTAATCCGGGTCAATATCCATAACTTCAACACAAGCGAATATGTTTTGGAGCTGCGGAATAATATTCTCACAGTCGTCTGTTCTCCACAAATACTCCACAGAATTGCCGAATAGATGAAAATTATGATTGTGAATCGATTCGATGACAGATCTGCTCTCATCCGGTTCAAAAGATGCTACAAGAAGCGGTTCGAATTTATCGGATATTCTGAAAAAATAATTTTAATAATTTCTTGTTCATTGCAACTCACCTAAAATAAATAATTTTTCCAGATACGTTCAACGGAAAATAATCATTTTTAGTCGTCTGGCGTTCCACAATTTTTATCAAAACTTCTCTCCGACCCTGCTTAGGTGAAATATCAACAAACGGTTGTTTATTTGTATCATTACATGTATATCTGAGAGATCTGATATTTTTGAATCTATTGCTTTGAGTTAATTTGATCAACTTCTTCATTTTCGTCGAGACAAACGAAAGAAGAAATAGATTCTGATAATCGATGTTTTGGAGAATCTCTCTCTGGACCAAATAAGGATATTCGAAAAGTTTCATTTTGCAGTTCTGAAAATATAAAGCAGATTGCAGAGAAGAAAACAATTATTGGAAAGCGAGTGAAAGACATAAAGAGAGAGAGAGAGGACAACTTATCAAGAAAAAAGGTGTCTTCTGACGTGGCGAATAACCCAAAAGACACAGAGGAGGCAAAGAGAATGGTGGGTCCGAATCGAAGAGGGTGTATTGACTTTGACTAGTCAATAAGCAGTCTCTAGTGTCCCACAAAACCAACCCCTGGTTAGCACGTTCTACCTCACATG</canonical>
            <polymorphic>TTGCTTGTTTCCCTTGAAAATGACGTAAAACAAAAGGAATAGTGCTATTGGGTTGAACTACTTCAACACATTCTGCCTGATAGGCTTTAGAATTCGGACTGAATGGTTCTGTGTATCCCAACGCGTAAAACATAATGTATTTCAAGTTTGGAGATTCTGAGAAAAAGTGTTCAAGGTTGGCGTAATCCGGGTCAATATCCATAACTTCAACACAAGCGAATATGTTTTGGAGCTGCGGAATAATATTCTCACAGTCGTCTGTTCTCCACAAATACTCCACAGAATTGCCGAATAGATGAAAATTATGATTGTGAATCGATTCGATGACAGATCTGCTCTCATCCGGTTCAAAAGATGCTACAAGAAGCGGTTCGAATTTATCGGATATTCTGAAAAAATAATTTTAATAATTTCTTGTTCATTGCAACTCACCTAAAATAAATAATTTTTCCAGATACGTTCAACGGAAAATAATCATTTTTAGTCGTCTGGCGTTCCAYAATTTTTATCAAAACTTCTCTCCGACCCTGCTTAGGTGAAATATCAACAAACGGTTGTTTATTTGTATCATTACATGTATATCTGAGAGATCTGATATTTTTGAATCTATTGCTTTGAGTTAATTTGATCAACTTCTTCATTTTCGTCGAGACAAACGAAAGAAGAAATAGATTCTGATAATCGATGTTTTGGAGAATCTCTCTCTGGACCAAATAAGGATATTCGAAAAGTTTCATTTTGCAGTTCTGAAAATATAAAGCAGATTGCAGAGAAGAAAACAATTATTGGAAAGCGAGTGAAAGACATAAAGAGAGAGAGAGAGGACAACTTATCAAGAAAAAAGGTGTCTTCTGACGTGGCGAATAACCCAAAAGACACAGAGGAGGCAAAGAGAATGGTGGGTCCGAATCGAAGAGGGTGTATTGACTTTGACTAGTCAATAAGCAGTCTCTAGTGTCCCACAAAACCAACCCCTGGTTAGCACGTTCTACCTCACATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>261 118 68 56 48 45 44 43 39 39 36 34 24 23 22 20 19 17 12 12 11 5 4</canonical_bands>
                <polymorphic_bands>261 118 107 56 48 45 44 43 39 36 34 24 23 22 20 19 17 12 12 11 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTGCAACTCACCTAAAATAAA</pcr_primer_p1>
		<pcr_primer_p2>CTATTTCTTCTTTCGTTTGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CATTGCAACTCACCTAAAATAAATAATTTTTCCAGATACGTTCAACGGAAAATAATCATTTTTAGTCGTCTGGCGTTCCACAATTTTTATCAAAACTTCTCTCCGACCCTGCTTAGGTGAAATATCAACAAACGGTTGTTTATTTGTATCATTACATGTATATCTGAGAGATCTGATATTTTTGAATCTATTGCTTTGAGTTAATTTGATCAACTTCTTCATTTTCGTCGAGACAAACGAAAGAAGAAATAG</canonical_amplicon>
		<polymorphic_amplicon>CATTGCAACTCACCTAAAATAAATAATTTTTCCAGATACGTTCAACGGAAAATAATCATTTTTAGTCGTCTGGCGTTCCAYAATTTTTATCAAAACTTCTCTCCGACCCTGCTTAGGTGAAATATCAACAAACGGTTGTTTATTTGTATCATTACATGTATATCTGAGAGATCTGATATTTTTGAATCTATTGCTTTGAGTTAATTTGATCAACTTCTTCATTTTCGTCGAGACAAACGAAAGAAGAAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16510</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>526704</contig_pos>
        <strand>+</strand>
        <context>GTCCGAATCG[A/G]AGAGGGTGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATAACCCAAAAGACACAGAGGAGGCAAAGAGAATGGTGGGTCCGAATCG</left_flank>
        <right_flank>AGAGGGTGTATTGACTTTGACTAGTCAATAAGCAGTCTCTAGTGTCCCAC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTGTTCATTGCAACTCACCTAAAATAAATAATTTTTCCAGATACGTTCAACGGAAAATAATCATTTTTAGTCGTCTGGCGTTCCACAATTTTTATCAAAACTTCTCTCCGACCCTGCTTAGGTGAAATATCAACAAACGGTTGTTTATTTGTATCATTACATGTATATCTGAGAGATCTGATATTTTTGAATCTATTGCTTTGAGTTAATTTGATCAACTTCTTCATTTTCGTCGAGACAAACGAAAGAAGAAATAGATTCTGATAATCGATGTTTTGGAGAATCTCTCTCTGGACCAAATAAGGATATTCGAAAAGTTTCATTTTGCAGTTCTGAAAATATAAAGCAGATTGCAGAGAAGAAAACAATTATTGGAAAGCGAGTGAAAGACATAAAGAGAGAGAGAGAGGACAACTTATCAAGAAAAAAGGTGTCTTCTGACGTGGCGAATAACCCAAAAGACACAGAGGAGGCAAAGAGAATGGTGGGTCCGAATCGAAGAGGGTGTATTGACTTTGACTAGTCAATAAGCAGTCTCTAGTGTCCCACAAAACCAACCCCTGGTTAGCACGTTCTACCTCACATGAGCAACTGGAGGGAGGGCCAGAACACGTAGATCGTGTGTCTACCTTCCATTTTTTGTCCTTCGAAAACAGGTGGATTAGTTCGATAGCATTATTTCCTTACCTTTTAGGACCATTCTTATTGTTGCCTCAATGGGTTCGTTTTTTGCACCTACAAGAGCTGAAAGAAAATAACACGTCGAATGTTATTGATAGATTTTAGCCGACCATAATTTTGGACCCATTACATACGATGTTTTCAACCAGGGCTGATTTGCAACAAAAAAGAACTGGTCGGGTGTTGCTGGCAATTCTTGACCGATCATAGTTTTTGACTCTCATTAATTGTGCTCCCCTGTTTCTTACGTTGTATTCTTCACAAAAATGAAGACTTGACAGGAATATAAATAACATGTATACGATTGAAAAAGAGCAA</canonical>
            <polymorphic>CTTGTTCATTGCAACTCACCTAAAATAAATAATTTTTCCAGATACGTTCAACGGAAAATAATCATTTTTAGTCGTCTGGCGTTCCACAATTTTTATCAAAACTTCTCTCCGACCCTGCTTAGGTGAAATATCAACAAACGGTTGTTTATTTGTATCATTACATGTATATCTGAGAGATCTGATATTTTTGAATCTATTGCTTTGAGTTAATTTGATCAACTTCTTCATTTTCGTCGAGACAAACGAAAGAAGAAATAGATTCTGATAATCGATGTTTTGGAGAATCTCTCTCTGGACCAAATAAGGATATTCGAAAAGTTTCATTTTGCAGTTCTGAAAATATAAAGCAGATTGCAGAGAAGAAAACAATTATTGGAAAGCGAGTGAAAGACATAAAGAGAGAGAGAGAGGACAACTTATCAAGAAAAAAGGTGTCTTCTGACGTGGCGAATAACCCAAAAGACACAGAGGAGGCAAAGAGAATGGTGGGTCCGAATCGRAGAGGGTGTATTGACTTTGACTAGTCAATAAGCAGTCTCTAGTGTCCCACAAAACCAACCCCTGGTTAGCACGTTCTACCTCACATGAGCAACTGGAGGGAGGGCCAGAACACGTAGATCGTGTGTCTACCTTCCATTTTTTGTCCTTCGAAAACAGGTGGATTAGTTCGATAGCATTATTTCCTTACCTTTTAGGACCATTCTTATTGTTGCCTCAATGGGTTCGTTTTTTGCACCTACAAGAGCTGAAAGAAAATAACACGTCGAATGTTATTGATAGATTTTAGCCGACCATAATTTTGGACCCATTACATACGATGTTTTCAACCAGGGCTGATTTGCAACAAAAAAGAACTGGTCGGGTGTTGCTGGCAATTCTTGACCGATCATAGTTTTTGACTCTCATTAATTGTGCTCCCCTGTTTCTTACGTTGTATTCTTCACAAAAATGAAGACTTGACAGGAATATAAATAACATGTATACGATTGAAAAAGAGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>235 235 186 151 96 42 35 20</canonical_bands>
                <polymorphic_bands>337 235 235 96 42 35 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATATTCGAAAAGTTTCATTTTG</pcr_primer_p1>
		<pcr_primer_p2>GTTTTGTGGGACACTAGAGACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATATTCGAAAAGTTTCATTTTGCAGTTCTGAAAATATAAAGCAGATTGCAGAGAAGAAAACAATTATTGGAAAGCGAGTGAAAGACATAAAGAGAGAGAGAGAGGACAACTTATCAAGAAAAAAGGTGTCTTCTGACGTGGCGAATAACCCAAAAGACACAGAGGAGGCAAAGAGAATGGTGGGTCCGAATCGAAGAGGGTGTATTGACTTTGACTAGTCAATAAGCAGTCTCTAGTGTCCCACAAAAC</canonical_amplicon>
		<polymorphic_amplicon>GATATTCGAAAAGTTTCATTTTGCAGTTCTGAAAATATAAAGCAGATTGCAGAGAAGAAAACAATTATTGGAAAGCGAGTGAAAGACATAAAGAGAGAGAGAGAGGACAACTTATCAAGAAAAAAGGTGTCTTCTGACGTGGCGAATAACCCAAAAGACACAGAGGAGGCAAAGAGAATGGTGGGTCCGAATCGRAGAGGGTGTATTGACTTTGACTAGTCAATAAGCAGTCTCTAGTGTCCCACAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16511</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>526670</contig_pos>
        <strand>+</strand>
        <context>CCAAAAGACA[A/C]AGAGGAGGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTATCAAGAAAAAAGGTGTCTTCTGACGTGGCGAATAACCCAAAAGACA</left_flank>
        <right_flank>AGAGGAGGCAAAGAGAATGGTGGGTCCGAATCGAAGAGGGTGTATTGACT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGGATATTCTGAAAAAATAATTTTAATAATTTCTTGTTCATTGCAACTCACCTAAAATAAATAATTTTTCCAGATACGTTCAACGGAAAATAATCATTTTTAGTCGTCTGGCGTTCCACAATTTTTATCAAAACTTCTCTCCGACCCTGCTTAGGTGAAATATCAACAAACGGTTGTTTATTTGTATCATTACATGTATATCTGAGAGATCTGATATTTTTGAATCTATTGCTTTGAGTTAATTTGATCAACTTCTTCATTTTCGTCGAGACAAACGAAAGAAGAAATAGATTCTGATAATCGATGTTTTGGAGAATCTCTCTCTGGACCAAATAAGGATATTCGAAAAGTTTCATTTTGCAGTTCTGAAAATATAAAGCAGATTGCAGAGAAGAAAACAATTATTGGAAAGCGAGTGAAAGACATAAAGAGAGAGAGAGAGGACAACTTATCAAGAAAAAAGGTGTCTTCTGACGTGGCGAATAACCCAAAAGACACAGAGGAGGCAAAGAGAATGGTGGGTCCGAATCGAAGAGGGTGTATTGACTTTGACTAGTCAATAAGCAGTCTCTAGTGTCCCACAAAACCAACCCCTGGTTAGCACGTTCTACCTCACATGAGCAACTGGAGGGAGGGCCAGAACACGTAGATCGTGTGTCTACCTTCCATTTTTTGTCCTTCGAAAACAGGTGGATTAGTTCGATAGCATTATTTCCTTACCTTTTAGGACCATTCTTATTGTTGCCTCAATGGGTTCGTTTTTTGCACCTACAAGAGCTGAAAGAAAATAACACGTCGAATGTTATTGATAGATTTTAGCCGACCATAATTTTGGACCCATTACATACGATGTTTTCAACCAGGGCTGATTTGCAACAAAAAAGAACTGGTCGGGTGTTGCTGGCAATTCTTGACCGATCATAGTTTTTGACTCTCATTAATTGTGCTCCCCTGTTTCTTACGTTGTATTCTTCACAAAAATGAAGACTTGACAGGAA</canonical>
            <polymorphic>ATCGGATATTCTGAAAAAATAATTTTAATAATTTCTTGTTCATTGCAACTCACCTAAAATAAATAATTTTTCCAGATACGTTCAACGGAAAATAATCATTTTTAGTCGTCTGGCGTTCCACAATTTTTATCAAAACTTCTCTCCGACCCTGCTTAGGTGAAATATCAACAAACGGTTGTTTATTTGTATCATTACATGTATATCTGAGAGATCTGATATTTTTGAATCTATTGCTTTGAGTTAATTTGATCAACTTCTTCATTTTCGTCGAGACAAACGAAAGAAGAAATAGATTCTGATAATCGATGTTTTGGAGAATCTCTCTCTGGACCAAATAAGGATATTCGAAAAGTTTCATTTTGCAGTTCTGAAAATATAAAGCAGATTGCAGAGAAGAAAACAATTATTGGAAAGCGAGTGAAAGACATAAAGAGAGAGAGAGAGGACAACTTATCAAGAAAAAAGGTGTCTTCTGACGTGGCGAATAACCCAAAAGACAMAGAGGAGGCAAAGAGAATGGTGGGTCCGAATCGAAGAGGGTGTATTGACTTTGACTAGTCAATAAGCAGTCTCTAGTGTCCCACAAAACCAACCCCTGGTTAGCACGTTCTACCTCACATGAGCAACTGGAGGGAGGGCCAGAACACGTAGATCGTGTGTCTACCTTCCATTTTTTGTCCTTCGAAAACAGGTGGATTAGTTCGATAGCATTATTTCCTTACCTTTTAGGACCATTCTTATTGTTGCCTCAATGGGTTCGTTTTTTGCACCTACAAGAGCTGAAAGAAAATAACACGTCGAATGTTATTGATAGATTTTAGCCGACCATAATTTTGGACCCATTACATACGATGTTTTCAACCAGGGCTGATTTGCAACAAAAAAGAACTGGTCGGGTGTTGCTGGCAATTCTTGACCGATCATAGTTTTTGACTCTCATTAATTGTGCTCCCCTGTTTCTTACGTTGTATTCTTCACAAAAATGAAGACTTGACAGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>261 104 75 68 52 49 48 39 36 35 29 29 26 23 23 22 20 19 12 12 11 5 2</canonical_bands>
                <polymorphic_bands>261 104 75 68 52 49 48 42 39 36 35 29 29 26 23 22 20 12 12 11 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGATATTCGAAAAGTTTCATTT</pcr_primer_p1>
		<pcr_primer_p2>GGACACTAGAGACTGCTTATTGA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AGGATATTCGAAAAGTTTCATTTTGCAGTTCTGAAAATATAAAGCAGATTGCAGAGAAGAAAACAATTATTGGAAAGCGAGTGAAAGACATAAAGAGAGAGAGAGAGGACAACTTATCAAGAAAAAAGGTGTCTTCTGACGTGGCGAATAACCCAAAAGACACAGAGGAGGCAAAGAGAATGGTGGGTCCGAATCGAAGAGGGTGTATTGACTTTGACTAGTCAATAAGCAGTCTCTAGTGTCC</canonical_amplicon>
		<polymorphic_amplicon>AGGATATTCGAAAAGTTTCATTTTGCAGTTCTGAAAATATAAAGCAGATTGCAGAGAAGAAAACAATTATTGGAAAGCGAGTGAAAGACATAAAGAGAGAGAGAGAGGACAACTTATCAAGAAAAAAGGTGTCTTCTGACGTGGCGAATAACCCAAAAGACAMAGAGGAGGCAAAGAGAATGGTGGGTCCGAATCGAAGAGGGTGTATTGACTTTGACTAGTCAATAAGCAGTCTCTAGTGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16512</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>530965</contig_pos>
        <strand>+</strand>
        <context>acggtAGTTT[A/G]CGTCTGTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCAAAGTGAACAGTTAGGGGCCCTTCCATCACAGCTCTTACGGTAGTTT</left_flank>
        <right_flank>CGTCTGTTTTTTTTCATTCCATATTTTGAAAAACTATTTGACATCCCTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATCCAGTTCAAATAGATTAATTATGTGATAAACCAGAGAACTGGTTGTTCGGAATAGAACGGTTACATACTTATGAAAATTCGCGTAAAATACAGTTTTTGAACCGCCTTATTACTAGAACGTTCCTCAACTGACTAGTGATCCAAGGACATAAAAAATTTTTTTTCGATTCGATTCCGGAAAATAATGTTTCTAGTTTGTTGCAAACGTCATCAATTCCAACAGAATATTTTTGTGAAAATTATTTTATTGTAGCATTGGTGTTTGTAGTATTTCATTATTTCTGAGAACAAACCGTAAGACCCTTAATCTCAAGGTTGAGCTAATTTTTCTCGGCTCATTTGTGCAATATCAAAAATGTGTCAACTGAAAAATTTCGCGATATAATGATCAACAATTCATTAGTTGAAATGTTTCATATCTCTCACAGAAATCAAGATAAATTGACTCAAAGTGAACAGTTAGGGGCCCTTCCATCACAGCTCTTACGGTAGTTTGCGTCTGTTTTTTTTCATTCCATATTTTGAAAAACTATTTGACATCCCTGGGCAAGCACTTTCATCTCTCCCAATGAATTTTTTTCGAATATCCCCATGCCTCGATCCACGGAGACCCTAATACCCCACTAGTTGCCATTAGCCATGTTGCACACCTAAAAGGGGTTGGGGGTGTGATCTAGAAGGTAAAAAGGCGTTGTTTGTTTGTTCTGCCTTTGCTCCGCCCTTTTTTAGCCACACCCTGCCTTCCATTTGGTGTTGTAGGATTGATAGATTTTATTCATCATTTTTTCCAACGACGGTGTTTATTCTTTTTTCATCATTCCTGAGAACATTTTTTGAATTCTGTTTTTTCCCTTTTTCAATCATCTCACCCAGCCTTCTCATCATCAATCGTACCCTTTGGTTTTTTTCCGGCAAACATGAGGTCAACACGACGTGGGTAGTTTTTGCTAGTGTGTTGCCCGCACCTCTAACCGTTTTTCTCACCTTCTGCCTCTC</canonical>
            <polymorphic>ATATCCAGTTCAAATAGATTAATTATGTGATAAACCAGAGAACTGGTTGTTCGGAATAGAACGGTTACATACTTATGAAAATTCGCGTAAAATACAGTTTTTGAACCGCCTTATTACTAGAACGTTCCTCAACTGACTAGTGATCCAAGGACATAAAAAATTTTTTTTCGATTCGATTCCGGAAAATAATGTTTCTAGTTTGTTGCAAACGTCATCAATTCCAACAGAATATTTTTGTGAAAATTATTTTATTGTAGCATTGGTGTTTGTAGTATTTCATTATTTCTGAGAACAAACCGTAAGACCCTTAATCTCAAGGTTGAGCTAATTTTTCTCGGCTCATTTGTGCAATATCAAAAATGTGTCAACTGAAAAATTTCGCGATATAATGATCAACAATTCATTAGTTGAAATGTTTCATATCTCTCACAGAAATCAAGATAAATTGACTCAAAGTGAACAGTTAGGGGCCCTTCCATCACAGCTCTTACGGTAGTTTRCGTCTGTTTTTTTTCATTCCATATTTTGAAAAACTATTTGACATCCCTGGGCAAGCACTTTCATCTCTCCCAATGAATTTTTTTCGAATATCCCCATGCCTCGATCCACGGAGACCCTAATACCCCACTAGTTGCCATTAGCCATGTTGCACACCTAAAAGGGGTTGGGGGTGTGATCTAGAAGGTAAAAAGGCGTTGTTTGTTTGTTCTGCCTTTGCTCCGCCCTTTTTTAGCCACACCCTGCCTTCCATTTGGTGTTGTAGGATTGATAGATTTTATTCATCATTTTTTCCAACGACGGTGTTTATTCTTTTTTCATCATTCCTGAGAACATTTTTTGAATTCTGTTTTTTCCCTTTTTCAATCATCTCACCCAGCCTTCTCATCATCAATCGTACCCTTTGGTTTTTTTCCGGCAAACATGAGGTCAACACGACGTGGGTAGTTTTTGCTAGTGTGTTGCCCGCACCTCTAACCGTTTTTCTCACCTTCTGCCTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTCTGAGAACAAACCGTAAG</pcr_primer_p1>
		<pcr_primer_p2>CATTGGGAGAGATGAAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>295</pcr_amplicon_size>
		<canonical_amplicon>TATTTCTGAGAACAAACCGTAAGACCCTTAATCTCAAGGTTGAGCTAATTTTTCTCGGCTCATTTGTGCAATATCAAAAATGTGTCAACTGAAAAATTTCGCGATATAATGATCAACAATTCATTAGTTGAAATGTTTCATATCTCTCACAGAAATCAAGATAAATTGACTCAAAGTGAACAGTTAGGGGCCCTTCCATCACAGCTCTTACGGTAGTTTGCGTCTGTTTTTTTTCATTCCATATTTTGAAAAACTATTTGACATCCCTGGGCAAGCACTTTCATCTCTCCCAATG</canonical_amplicon>
		<polymorphic_amplicon>TATTTCTGAGAACAAACCGTAAGACCCTTAATCTCAAGGTTGAGCTAATTTTTCTCGGCTCATTTGTGCAATATCAAAAATGTGTCAACTGAAAAATTTCGCGATATAATGATCAACAATTCATTAGTTGAAATGTTTCATATCTCTCACAGAAATCAAGATAAATTGACTCAAAGTGAACAGTTAGGGGCCCTTCCATCACAGCTCTTACGGTAGTTTRCGTCTGTTTTTTTTCATTCCATATTTTGAAAAACTATTTGACATCCCTGGGCAAGCACTTTCATCTCTCCCAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16513</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>533785</contig_pos>
        <strand>+</strand>
        <context>TTCCAATCAA[A/C]CGTTTTTAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAAAAGTGTTTACCAAGCTATAGAAATGAATCTTAAGAATTCCAATCAA</left_flank>
        <right_flank>CGTTTTTAGGAAATATGAAACATGCTTTGGCAAAAGAATATGGTGCAGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAAGAAAACTTTTTTCGTTCTCAGCCAACAAACTGGCTCAAGAAGCCCGTAGCTTATAACACATTGCATACATTATAAAAGTCTCACGTGCTTTTGAATTACTTAAGTTAAAGTCCGAGACAGACAGGCATACCAACAGACTAAAAGATTTTTCGGTAAATCTCCTTACCTGCTATTTATACTAACTCATGAGATTCGAATGCCCGTGAAGAACAATGAATTTTTCAACAACAATAAGAAGATCGTACAAATTAGTGAAAATATTTTGATCGGTTTTAAATTATTTTCTCCTTCTCAAAAGTAACTCTTTCTGAAATCTGTTTTGTCATATTACCGAACCATATCCCATTTTCAGATAATCAATCAAGCGACAATGTTGCGTTTGGATGCACTTTGTACTAAGAAAATCACCAACTTCTACTTGAACGGTACGAAATTATTATTTTTAGAAAAGTGTTTACCAAGCTATAGAAATGAATCTTAAGAATTCCAATCAACCGTTTTTAGGAAATATGAAACATGCTTTGGCAAAAGAATATGGTGCAGATAAGCTTGTCGAAATGAGCAGAGTTTTGGAGATGAGCCAAAGCGAAATTTCCCAAGATGTCTTAAAACAATCCAATGGAAATTTCACGAAAGAGATGGCAGAGTCTGTGATTGGGGGACGTCATTTCACAGGAAGAATGGGAAAACGATTTGCGAAGCAACTGAAGGGAGCATTCGAAGCAAAAAACAATGCTACTTCTGAAGAAGACTTTGGAACATTCGGCGGACTGAGATTCGATAAAGTTACGATTGACAACGAAAACTTCAACAAACACTTCTGTGATGTGATTTTTGCTCAAGAGCTCGCAAGTTTGGTTATTTCCAATATGGATTCACCATTTTTCAATATGAAGGAAGTGCAATCAGATGATGGTAATTTTATTGCATTTTTATTATTATCAGAACTGTGTTTACATCATCGTTTCAGGTTCAAAGGAAAGCCAAGTCAAACT</canonical>
            <polymorphic>TTTAAGAAAACTTTTTTCGTTCTCAGCCAACAAACTGGCTCAAGAAGCCCGTAGCTTATAACACATTGCATACATTATAAAAGTCTCACGTGCTTTTGAATTACTTAAGTTAAAGTCCGAGACAGACAGGCATACCAACAGACTAAAAGATTTTTCGGTAAATCTCCTTACCTGCTATTTATACTAACTCATGAGATTCGAATGCCCGTGAAGAACAATGAATTTTTCAACAACAATAAGAAGATCGTACAAATTAGTGAAAATATTTTGATCGGTTTTAAATTATTTTCTCCTTCTCAAAAGTAACTCTTTCTGAAATCTGTTTTGTCATATTACCGAACCATATCCCATTTTCAGATAATCAATCAAGCGACAATGTTGCGTTTGGATGCACTTTGTACTAAGAAAATCACCAACTTCTACTTGAACGGTACGAAATTATTATTTTTAGAAAAGTGTTTACCAAGCTATAGAAATGAATCTTAAGAATTCCAATCAAMCGTTTTTAGGAAATATGAAACATGCTTTGGCAAAAGAATATGGTGCAGATAAGCTTGTCGAAATGAGCAGAGTTTTGGAGATGAGCCAAAGCGAAATTTCCCAAGATGTCTTAAAACAATCCAATGGAAATTTCACGAAAGAGATGGCAGAGTCTGTGATTGGGGGACGTCATTTCACAGGAAGAATGGGAAAACGATTTGCGAAGCAACTGAAGGGAGCATTCGAAGCAAAAAACAATGCTACTTCTGAAGAAGACTTTGGAACATTCGGCGGACTGAGATTCGATAAAGTTACGATTGACAACGAAAACTTCAACAAACACTTCTGTGATGTGATTTTTGCTCAAGAGCTCGCAAGTTTGGTTATTTCCAATATGGATTCACCATTTTTCAATATGAAGGAAGTGCAATCAGATGATGGTAATTTTATTGCATTTTTATTATTATCAGAACTGTGTTTACATCATCGTTTCAGGTTCAAAGGAAAGCCAAGTCAAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>453 430 71 46</canonical_bands>
                <polymorphic_bands>524 430 46</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTCTGAAATCTGTTTTGTCAT</pcr_primer_p1>
		<pcr_primer_p2>ACAAGCTTATCTGCACCATATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTCTGAAATCTGTTTTGTCATATTACCGAACCATATCCCATTTTCAGATAATCAATCAAGCGACAATGTTGCGTTTGGATGCACTTTGTACTAAGAAAATCACCAACTTCTACTTGAACGGTACGAAATTATTATTTTTAGAAAAGTGTTTACCAAGCTATAGAAATGAATCTTAAGAATTCCAATCAACCGTTTTTAGGAAATATGAAACATGCTTTGGCAAAAGAATATGGTGCAGATAAGCTTGT</canonical_amplicon>
		<polymorphic_amplicon>CTTTCTGAAATCTGTTTTGTCATATTACCGAACCATATCCCATTTTCAGATAATCAATCAAGCGACAATGTTGCGTTTGGATGCACTTTGTACTAAGAAAATCACCAACTTCTACTTGAACGGTACGAAATTATTATTTTTAGAAAAGTGTTTACCAAGCTATAGAAATGAATCTTAAGAATTCCAATCAAMCGTTTTTAGGAAATATGAAACATGCTTTGGCAAAAGAATATGGTGCAGATAAGCTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16514</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>533469</contig_pos>
        <strand>+</strand>
        <context>GCTATTTATA[C/T]TAACTCATGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCAACAGACTAAAAGATTTTTCGGTAAATCTCCTTACCTGCTATTTATA</left_flank>
        <right_flank>TAACTCATGAGATTCGAATGCCCGTGAAGAACAATGAATTTTTCAACAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGCATATATTGATTGAGATTTATTCACGAAGACGAGCGCACCACCCAATCTAAGATGTGTCTGCCGCGAGTCGTAAATTACGCAACAGACAGGGATTGTTTCAATGCTACGTAGTGTGGTACGCGTACAGAAAATGATGAGAGATGAGAGATAAGAGGAAAAAGAGAGCTAAGGAAAATGCGCTAACTTTTGATAGGGAAGGTTACATTTACACAGTTATCAGGGATAATCATATACGAGTTCAACCGTTCCCAGAGAATTACATGGAATTTGAGTCAATTCTGGAAAAAACATGATTTCCAAAAATTCTGAAGATTTAAGAAAACTTTTTTCGTTCTCAGCCAACAAACTGGCTCAAGAAGCCCGTAGCTTATAACACATTGCATACATTATAAAAGTCTCACGTGCTTTTGAATTACTTAAGTTAAAGTCCGAGACAGACAGGCATACCAACAGACTAAAAGATTTTTCGGTAAATCTCCTTACCTGCTATTTATACTAACTCATGAGATTCGAATGCCCGTGAAGAACAATGAATTTTTCAACAACAATAAGAAGATCGTACAAATTAGTGAAAATATTTTGATCGGTTTTAAATTATTTTCTCCTTCTCAAAAGTAACTCTTTCTGAAATCTGTTTTGTCATATTACCGAACCATATCCCATTTTCAGATAATCAATCAAGCGACAATGTTGCGTTTGGATGCACTTTGTACTAAGAAAATCACCAACTTCTACTTGAACGGTACGAAATTATTATTTTTAGAAAAGTGTTTACCAAGCTATAGAAATGAATCTTAAGAATTCCAATCAACCGTTTTTAGGAAATATGAAACATGCTTTGGCAAAAGAATATGGTGCAGATAAGCTTGTCGAAATGAGCAGAGTTTTGGAGATGAGCCAAAGCGAAATTTCCCAAGATGTCTTAAAACAATCCAATGGAAATTTCACGAAAGAGATGGCAGAGTCTGTGATTGGGGGACGTCATTTCACAGGAAG</canonical>
            <polymorphic>CTGCATATATTGATTGAGATTTATTCACGAAGACGAGCGCACCACCCAATCTAAGATGTGTCTGCCGCGAGTCGTAAATTACGCAACAGACAGGGATTGTTTCAATGCTACGTAGTGTGGTACGCGTACAGAAAATGATGAGAGATGAGAGATAAGAGGAAAAAGAGAGCTAAGGAAAATGCGCTAACTTTTGATAGGGAAGGTTACATTTACACAGTTATCAGGGATAATCATATACGAGTTCAACCGTTCCCAGAGAATTACATGGAATTTGAGTCAATTCTGGAAAAAACATGATTTCCAAAAATTCTGAAGATTTAAGAAAACTTTTTTCGTTCTCAGCCAACAAACTGGCTCAAGAAGCCCGTAGCTTATAACACATTGCATACATTATAAAAGTCTCACGTGCTTTTGAATTACTTAAGTTAAAGTCCGAGACAGACAGGCATACCAACAGACTAAAAGATTTTTCGGTAAATCTCCTTACCTGCTATTTATAYTAACTCATGAGATTCGAATGCCCGTGAAGAACAATGAATTTTTCAACAACAATAAGAAGATCGTACAAATTAGTGAAAATATTTTGATCGGTTTTAAATTATTTTCTCCTTCTCAAAAGTAACTCTTTCTGAAATCTGTTTTGTCATATTACCGAACCATATCCCATTTTCAGATAATCAATCAAGCGACAATGTTGCGTTTGGATGCACTTTGTACTAAGAAAATCACCAACTTCTACTTGAACGGTACGAAATTATTATTTTTAGAAAAGTGTTTACCAAGCTATAGAAATGAATCTTAAGAATTCCAATCAACCGTTTTTAGGAAATATGAAACATGCTTTGGCAAAAGAATATGGTGCAGATAAGCTTGTCGAAATGAGCAGAGTTTTGGAGATGAGCCAAAGCGAAATTTCCCAAGATGTCTTAAAACAATCCAATGGAAATTTCACGAAAGAGATGGCAGAGTCTGTGATTGGGGGACGTCATTTCACAGGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATTTCCAAAAATTCTGAAG</pcr_primer_p1>
		<pcr_primer_p2>TATTGTTGTTGAAAAATTCATTG</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>ATGATTTCCAAAAATTCTGAAGATTTAAGAAAACTTTTTTCGTTCTCAGCCAACAAACTGGCTCAAGAAGCCCGTAGCTTATAACACATTGCATACATTATAAAAGTCTCACGTGCTTTTGAATTACTTAAGTTAAAGTCCGAGACAGACAGGCATACCAACAGACTAAAAGATTTTTCGGTAAATCTCCTTACCTGCTATTTATACTAACTCATGAGATTCGAATGCCCGTGAAGAACAATGAATTTTTCAACAACAATA</canonical_amplicon>
		<polymorphic_amplicon>ATGATTTCCAAAAATTCTGAAGATTTAAGAAAACTTTTTTCGTTCTCAGCCAACAAACTGGCTCAAGAAGCCCGTAGCTTATAACACATTGCATACATTATAAAAGTCTCACGTGCTTTTGAATTACTTAAGTTAAAGTCCGAGACAGACAGGCATACCAACAGACTAAAAGATTTTTCGGTAAATCTCCTTACCTGCTATTTATAYTAACTCATGAGATTCGAATGCCCGTGAAGAACAATGAATTTTTCAACAACAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16515</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>595534</contig_pos>
        <strand>+</strand>
        <context>TTTTTCTTTT[A/G]GTGAATGGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGTGGAAAATGTTGAACCCCCACAGATTTGGAAAGAAGTTTTTCTTTT</left_flank>
        <right_flank>GTGAATGGTAAATAGTTTCTCTGGTTTGAACTTCAGAAGTTGAAGTAACA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAACTTACATCATGGACCGTAAAGGTAAGTGGTGTTGAATCAAGTGTCATACTAATCATTCAACAGTTGTTCTAGGACGTGAACGCAAGTTTCCTGGCATGAAAATCGTGATGCCACAGCCGGTCGAGACGCCAACAATGAATCTGGAAGACAGATGTCTTATCAAGTAAGTAATACGCGTGTCGGCGGCGCGGAGAAATAGGAACGGGCGGAACGACGCGGATTACATAAGATTTGAGAGTGATTTTGATTGATTCAGGCTGACAAACGAATCCGAGGAGATTGAGATTGCCGCCACTGACCTAATCGTCCTCGAGGAACTTGGTAAAGGAGGTTACGGGATTGTGGAGAAGATGCAGCACAGACAAAGTGGACTTATCATGGCAGTGAAGGTGAGAATTAGGAGAGGTTCTAGAGAATATTCGAAAAAGAACACCCTGGAGCCTAAAAAGTGGAAAATGTTGAACCCCCACAGATTTGGAAAGAAGTTTTTCTTTTAGTGAATGGTAAATAGTTTCTCTGGTTTGAACTTCAGAAGTTGAAGTAACAGTATCGGGACCACCGGTTCAGAAACCGGCACATAATTCGGAGGGTACAACGATTCGCGGGTACAAGAGGGTAAAAAGTGATTTAGGTGTACAAAATCCTCAATTTGGGGTACAAGTTTTGCCTTTTTCAGGTATTTTGTACCCCCGAGTTGAGGATTTTTGACCACTGAATCGTTTTTTTCCCCCAATAACCGCAAAATTTTCGTACTCTCCGAATTATATGCCTCAGAATGTTCCAGACTTTGGTTGAGAATGTTCCAGGCTTTGAAAAACCATAATCTAGGACTTTTTTGACTAAATGATCAATTGATAAGTTCGACACTACACTTAAGGTATACTGTAGCAGATCCCGACTGATTAGTCAGCCCCGGTGACTTCAACAGAGGGACTACATAAAAAAGCTGCACATCGGACACTCATGAGATAATCATTCGTTTAAATCTCTCTTAAG</canonical>
            <polymorphic>GAAACTTACATCATGGACCGTAAAGGTAAGTGGTGTTGAATCAAGTGTCATACTAATCATTCAACAGTTGTTCTAGGACGTGAACGCAAGTTTCCTGGCATGAAAATCGTGATGCCACAGCCGGTCGAGACGCCAACAATGAATCTGGAAGACAGATGTCTTATCAAGTAAGTAATACGCGTGTCGGCGGCGCGGAGAAATAGGAACGGGCGGAACGACGCGGATTACATAAGATTTGAGAGTGATTTTGATTGATTCAGGCTGACAAACGAATCCGAGGAGATTGAGATTGCCGCCACTGACCTAATCGTCCTCGAGGAACTTGGTAAAGGAGGTTACGGGATTGTGGAGAAGATGCAGCACAGACAAAGTGGACTTATCATGGCAGTGAAGGTGAGAATTAGGAGAGGTTCTAGAGAATATTCGAAAAAGAACACCCTGGAGCCTAAAAAGTGGAAAATGTTGAACCCCCACAGATTTGGAAAGAAGTTTTTCTTTTRGTGAATGGTAAATAGTTTCTCTGGTTTGAACTTCAGAAGTTGAAGTAACAGTATCGGGACCACCGGTTCAGAAACCGGCACATAATTCGGAGGGTACAACGATTCGCGGGTACAAGAGGGTAAAAAGTGATTTAGGTGTACAAAATCCTCAATTTGGGGTACAAGTTTTGCCTTTTTCAGGTATTTTGTACCCCCGAGTTGAGGATTTTTGACCACTGAATCGTTTTTTTCCCCCAATAACCGCAAAATTTTCGTACTCTCCGAATTATATGCCTCAGAATGTTCCAGACTTTGGTTGAGAATGTTCCAGGCTTTGAAAAACCATAATCTAGGACTTTTTTGACTAAATGATCAATTGATAAGTTCGACACTACACTTAAGGTATACTGTAGCAGATCCCGACTGATTAGTCAGCCCCGGTGACTTCAACAGAGGGACTACATAAAAAAGCTGCACATCGGACACTCATGAGATAATCATTCGTTTAAATCTCTCTTAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAACTTGGTAAAGGAGGTTA</pcr_primer_p1>
		<pcr_primer_p2>GTCCCGATACTGTTACTTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AGGAACTTGGTAAAGGAGGTTACGGGATTGTGGAGAAGATGCAGCACAGACAAAGTGGACTTATCATGGCAGTGAAGGTGAGAATTAGGAGAGGTTCTAGAGAATATTCGAAAAAGAACACCCTGGAGCCTAAAAAGTGGAAAATGTTGAACCCCCACAGATTTGGAAAGAAGTTTTTCTTTTAGTGAATGGTAAATAGTTTCTCTGGTTTGAACTTCAGAAGTTGAAGTAACAGTATCGGGAC</canonical_amplicon>
		<polymorphic_amplicon>AGGAACTTGGTAAAGGAGGTTACGGGATTGTGGAGAAGATGCAGCACAGACAAAGTGGACTTATCATGGCAGTGAAGGTGAGAATTAGGAGAGGTTCTAGAGAATATTCGAAAAAGAACACCCTGGAGCCTAAAAAGTGGAAAATGTTGAACCCCCACAGATTTGGAAAGAAGTTTTTCTTTTRGTGAATGGTAAATAGTTTCTCTGGTTTGAACTTCAGAAGTTGAAGTAACAGTATCGGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16516</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>595569</contig_pos>
        <strand>+</strand>
        <context>TTTGAACTTC[A/G]GAAGTTGAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAGTTTTTCTTTTAGTGAATGGTAAATAGTTTCTCTGGTTTGAACTTC</left_flank>
        <right_flank>GAAGTTGAAGTAACAGTATCGGGACCACCGGTTCAGAAACCGGCACATAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAATCAAGTGTCATACTAATCATTCAACAGTTGTTCTAGGACGTGAACGCAAGTTTCCTGGCATGAAAATCGTGATGCCACAGCCGGTCGAGACGCCAACAATGAATCTGGAAGACAGATGTCTTATCAAGTAAGTAATACGCGTGTCGGCGGCGCGGAGAAATAGGAACGGGCGGAACGACGCGGATTACATAAGATTTGAGAGTGATTTTGATTGATTCAGGCTGACAAACGAATCCGAGGAGATTGAGATTGCCGCCACTGACCTAATCGTCCTCGAGGAACTTGGTAAAGGAGGTTACGGGATTGTGGAGAAGATGCAGCACAGACAAAGTGGACTTATCATGGCAGTGAAGGTGAGAATTAGGAGAGGTTCTAGAGAATATTCGAAAAAGAACACCCTGGAGCCTAAAAAGTGGAAAATGTTGAACCCCCACAGATTTGGAAAGAAGTTTTTCTTTTAGTGAATGGTAAATAGTTTCTCTGGTTTGAACTTCAGAAGTTGAAGTAACAGTATCGGGACCACCGGTTCAGAAACCGGCACATAATTCGGAGGGTACAACGATTCGCGGGTACAAGAGGGTAAAAAGTGATTTAGGTGTACAAAATCCTCAATTTGGGGTACAAGTTTTGCCTTTTTCAGGTATTTTGTACCCCCGAGTTGAGGATTTTTGACCACTGAATCGTTTTTTTCCCCCAATAACCGCAAAATTTTCGTACTCTCCGAATTATATGCCTCAGAATGTTCCAGACTTTGGTTGAGAATGTTCCAGGCTTTGAAAAACCATAATCTAGGACTTTTTTGACTAAATGATCAATTGATAAGTTCGACACTACACTTAAGGTATACTGTAGCAGATCCCGACTGATTAGTCAGCCCCGGTGACTTCAACAGAGGGACTACATAAAAAAGCTGCACATCGGACACTCATGAGATAATCATTCGTTTAAATCTCTCTTAAGATATTCTATCCTAAATCAGTTTTTACTTCCTGTGC</canonical>
            <polymorphic>TTGAATCAAGTGTCATACTAATCATTCAACAGTTGTTCTAGGACGTGAACGCAAGTTTCCTGGCATGAAAATCGTGATGCCACAGCCGGTCGAGACGCCAACAATGAATCTGGAAGACAGATGTCTTATCAAGTAAGTAATACGCGTGTCGGCGGCGCGGAGAAATAGGAACGGGCGGAACGACGCGGATTACATAAGATTTGAGAGTGATTTTGATTGATTCAGGCTGACAAACGAATCCGAGGAGATTGAGATTGCCGCCACTGACCTAATCGTCCTCGAGGAACTTGGTAAAGGAGGTTACGGGATTGTGGAGAAGATGCAGCACAGACAAAGTGGACTTATCATGGCAGTGAAGGTGAGAATTAGGAGAGGTTCTAGAGAATATTCGAAAAAGAACACCCTGGAGCCTAAAAAGTGGAAAATGTTGAACCCCCACAGATTTGGAAAGAAGTTTTTCTTTTAGTGAATGGTAAATAGTTTCTCTGGTTTGAACTTCRGAAGTTGAAGTAACAGTATCGGGACCACCGGTTCAGAAACCGGCACATAATTCGGAGGGTACAACGATTCGCGGGTACAAGAGGGTAAAAAGTGATTTAGGTGTACAAAATCCTCAATTTGGGGTACAAGTTTTGCCTTTTTCAGGTATTTTGTACCCCCGAGTTGAGGATTTTTGACCACTGAATCGTTTTTTTCCCCCAATAACCGCAAAATTTTCGTACTCTCCGAATTATATGCCTCAGAATGTTCCAGACTTTGGTTGAGAATGTTCCAGGCTTTGAAAAACCATAATCTAGGACTTTTTTGACTAAATGATCAATTGATAAGTTCGACACTACACTTAAGGTATACTGTAGCAGATCCCGACTGATTAGTCAGCCCCGGTGACTTCAACAGAGGGACTACATAAAAAAGCTGCACATCGGACACTCATGAGATAATCATTCGTTTAAATCTCTCTTAAGATATTCTATCCTAAATCAGTTTTTACTTCCTGTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAGACAAAGTGGACTTATCAT</pcr_primer_p1>
		<pcr_primer_p2>GTTGTACCCTCCGAATTATGT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CACAGACAAAGTGGACTTATCATGGCAGTGAAGGTGAGAATTAGGAGAGGTTCTAGAGAATATTCGAAAAAGAACACCCTGGAGCCTAAAAAGTGGAAAATGTTGAACCCCCACAGATTTGGAAAGAAGTTTTTCTTTTAGTGAATGGTAAATAGTTTCTCTGGTTTGAACTTCAGAAGTTGAAGTAACAGTATCGGGACCACCGGTTCAGAAACCGGCACATAATTCGGAGGGTACAAC</canonical_amplicon>
		<polymorphic_amplicon>CACAGACAAAGTGGACTTATCATGGCAGTGAAGGTGAGAATTAGGAGAGGTTCTAGAGAATATTCGAAAAAGAACACCCTGGAGCCTAAAAAGTGGAAAATGTTGAACCCCCACAGATTTGGAAAGAAGTTTTTCTTTTAGTGAATGGTAAATAGTTTCTCTGGTTTGAACTTCRGAAGTTGAAGTAACAGTATCGGGACCACCGGTTCAGAAACCGGCACATAATTCGGAGGGTACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16517</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>595989</contig_pos>
        <strand>+</strand>
        <context>AAAAAGCTGC[A/T]CATCGGACAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATTAGTCAGCCCCGGTGACTTCAACAGAGGGACTACATAAAAAAGCTGC</left_flank>
        <right_flank>CATCGGACACTCATGAGATAATCATTCGTTTAAATCTCTCTTAAGATATT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAATGTTGAACCCCCACAGATTTGGAAAGAAGTTTTTCTTTTAGTGAATGGTAAATAGTTTCTCTGGTTTGAACTTCAGAAGTTGAAGTAACAGTATCGGGACCACCGGTTCAGAAACCGGCACATAATTCGGAGGGTACAACGATTCGCGGGTACAAGAGGGTAAAAAGTGATTTAGGTGTACAAAATCCTCAATTTGGGGTACAAGTTTTGCCTTTTTCAGGTATTTTGTACCCCCGAGTTGAGGATTTTTGACCACTGAATCGTTTTTTTCCCCCAATAACCGCAAAATTTTCGTACTCTCCGAATTATATGCCTCAGAATGTTCCAGACTTTGGTTGAGAATGTTCCAGGCTTTGAAAAACCATAATCTAGGACTTTTTTGACTAAATGATCAATTGATAAGTTCGACACTACACTTAAGGTATACTGTAGCAGATCCCGACTGATTAGTCAGCCCCGGTGACTTCAACAGAGGGACTACATAAAAAAGCTGCACATCGGACACTCATGAGATAATCATTCGTTTAAATCTCTCTTAAGATATTCTATCCTAAATCAGTTTTTACTTCCTGTGCTCAAAGAACCAGGGCCCAAAAAATCTGCAAAGCACGAATTCTATAGACTGTTCAATATAATTACCGCACGCCTTTCAAACCAATAATTGAGTTTTTTGGTGCATTGAAACAAAAGCTGAGCCCGCACAAAAAAGTGCAGCCTAGAGTAATTTGGTCAAATGGGGCAGAAGCATCAGACAAAGGATAAAATAACCCAGAGATAGAAAAATAGTTATACATCCGGGGTTCAGAGGAATTGAACGGAAAGGAAGTGTTGTTACCAAGGGCAACAAGAAAGGAAGATGAGTAAAAACTTATGGGGAGGCGAGAATCAATATGCTAACGTTTTGGGTTGAGAGAGAGAGAGAAAGAAGGAAAAGAATAGGGAACCCGCTGGCTTATCACGAGAAGGTGTGCATAAAACGGAATGAAGGGTTTTTT</canonical>
            <polymorphic>GAAAATGTTGAACCCCCACAGATTTGGAAAGAAGTTTTTCTTTTAGTGAATGGTAAATAGTTTCTCTGGTTTGAACTTCAGAAGTTGAAGTAACAGTATCGGGACCACCGGTTCAGAAACCGGCACATAATTCGGAGGGTACAACGATTCGCGGGTACAAGAGGGTAAAAAGTGATTTAGGTGTACAAAATCCTCAATTTGGGGTACAAGTTTTGCCTTTTTCAGGTATTTTGTACCCCCGAGTTGAGGATTTTTGACCACTGAATCGTTTTTTTCCCCCAATAACCGCAAAATTTTCGTACTCTCCGAATTATATGCCTCAGAATGTTCCAGACTTTGGTTGAGAATGTTCCAGGCTTTGAAAAACCATAATCTAGGACTTTTTTGACTAAATGATCAATTGATAAGTTCGACACTACACTTAAGGTATACTGTAGCAGATCCCGACTGATTAGTCAGCCCCGGTGACTTCAACAGAGGGACTACATAAAAAAGCTGCWCATCGGACACTCATGAGATAATCATTCGTTTAAATCTCTCTTAAGATATTCTATCCTAAATCAGTTTTTACTTCCTGTGCTCAAAGAACCAGGGCCCAAAAAATCTGCAAAGCACGAATTCTATAGACTGTTCAATATAATTACCGCACGCCTTTCAAACCAATAATTGAGTTTTTTGGTGCATTGAAACAAAAGCTGAGCCCGCACAAAAAAGTGCAGCCTAGAGTAATTTGGTCAAATGGGGCAGAAGCATCAGACAAAGGATAAAATAACCCAGAGATAGAAAAATAGTTATACATCCGGGGTTCAGAGGAATTGAACGGAAAGGAAGTGTTGTTACCAAGGGCAACAAGAAAGGAAGATGAGTAAAAACTTATGGGGAGGCGAGAATCAATATGCTAACGTTTTGGGTTGAGAGAGAGAGAGAAAGAAGGAAAAGAATAGGGAACCCGCTGGCTTATCACGAGAAGGTGTGCATAAAACGGAATGAAGGGTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>498 259 109 74 35 25</canonical_bands>
                <polymorphic_bands>607 259 74 35 25</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>155 130 117 77 70 59 49 47 35 34 33 33 30 25 25 18 18 10 10 9 9 5 2</canonical_bands>
                <polymorphic_bands>155 130 117 77 70 59 49 47 42 35 34 33 30 25 25 18 18 10 10 9 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATTGATAAGTTCGACACTACAC</pcr_primer_p1>
		<pcr_primer_p2>GCGGTAATTATATTGAACAGTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAATTGATAAGTTCGACACTACACTTAAGGTATACTGTAGCAGATCCCGACTGATTAGTCAGCCCCGGTGACTTCAACAGAGGGACTACATAAAAAAGCTGCACATCGGACACTCATGAGATAATCATTCGTTTAAATCTCTCTTAAGATATTCTATCCTAAATCAGTTTTTACTTCCTGTGCTCAAAGAACCAGGGCCCAAAAAATCTGCAAAGCACGAATTCTATAGACTGTTCAATATAATTACCGC</canonical_amplicon>
		<polymorphic_amplicon>CAATTGATAAGTTCGACACTACACTTAAGGTATACTGTAGCAGATCCCGACTGATTAGTCAGCCCCGGTGACTTCAACAGAGGGACTACATAAAAAAGCTGCWCATCGGACACTCATGAGATAATCATTCGTTTAAATCTCTCTTAAGATATTCTATCCTAAATCAGTTTTTACTTCCTGTGCTCAAAGAACCAGGGCCCAAAAAATCTGCAAAGCACGAATTCTATAGACTGTTCAATATAATTACCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16518</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>596104</contig_pos>
        <strand>+</strand>
        <context>CTGCAAAGCA[C/T]GAATTCTATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTACTTCCTGTGCTCAAAGAACCAGGGCCCAAAAAATCTGCAAAGCA</left_flank>
        <right_flank>GAATTCTATAGACTGTTCAATATAATTACCGCACGCCTTTCAAACCAATA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAACCGGCACATAATTCGGAGGGTACAACGATTCGCGGGTACAAGAGGGTAAAAAGTGATTTAGGTGTACAAAATCCTCAATTTGGGGTACAAGTTTTGCCTTTTTCAGGTATTTTGTACCCCCGAGTTGAGGATTTTTGACCACTGAATCGTTTTTTTCCCCCAATAACCGCAAAATTTTCGTACTCTCCGAATTATATGCCTCAGAATGTTCCAGACTTTGGTTGAGAATGTTCCAGGCTTTGAAAAACCATAATCTAGGACTTTTTTGACTAAATGATCAATTGATAAGTTCGACACTACACTTAAGGTATACTGTAGCAGATCCCGACTGATTAGTCAGCCCCGGTGACTTCAACAGAGGGACTACATAAAAAAGCTGCACATCGGACACTCATGAGATAATCATTCGTTTAAATCTCTCTTAAGATATTCTATCCTAAATCAGTTTTTACTTCCTGTGCTCAAAGAACCAGGGCCCAAAAAATCTGCAAAGCACGAATTCTATAGACTGTTCAATATAATTACCGCACGCCTTTCAAACCAATAATTGAGTTTTTTGGTGCATTGAAACAAAAGCTGAGCCCGCACAAAAAAGTGCAGCCTAGAGTAATTTGGTCAAATGGGGCAGAAGCATCAGACAAAGGATAAAATAACCCAGAGATAGAAAAATAGTTATACATCCGGGGTTCAGAGGAATTGAACGGAAAGGAAGTGTTGTTACCAAGGGCAACAAGAAAGGAAGATGAGTAAAAACTTATGGGGAGGCGAGAATCAATATGCTAACGTTTTGGGTTGAGAGAGAGAGAGAAAGAAGGAAAAGAATAGGGAACCCGCTGGCTTATCACGAGAAGGTGTGCATAAAACGGAATGAAGGGTTTTTTCACATCTCACCTTTTCTACGGCGTACGACCTCCCACTGATTGGTTTTTTGGCGGTCGGGGGGGGGGGGGGGCGCCCTCAATATGGCGTTGAGTATAGTTTCAAGGAAAAAAGAAT</canonical>
            <polymorphic>GAAACCGGCACATAATTCGGAGGGTACAACGATTCGCGGGTACAAGAGGGTAAAAAGTGATTTAGGTGTACAAAATCCTCAATTTGGGGTACAAGTTTTGCCTTTTTCAGGTATTTTGTACCCCCGAGTTGAGGATTTTTGACCACTGAATCGTTTTTTTCCCCCAATAACCGCAAAATTTTCGTACTCTCCGAATTATATGCCTCAGAATGTTCCAGACTTTGGTTGAGAATGTTCCAGGCTTTGAAAAACCATAATCTAGGACTTTTTTGACTAAATGATCAATTGATAAGTTCGACACTACACTTAAGGTATACTGTAGCAGATCCCGACTGATTAGTCAGCCCCGGTGACTTCAACAGAGGGACTACATAAAAAAGCTGCACATCGGACACTCATGAGATAATCATTCGTTTAAATCTCTCTTAAGATATTCTATCCTAAATCAGTTTTTACTTCCTGTGCTCAAAGAACCAGGGCCCAAAAAATCTGCAAAGCAYGAATTCTATAGACTGTTCAATATAATTACCGCACGCCTTTCAAACCAATAATTGAGTTTTTTGGTGCATTGAAACAAAAGCTGAGCCCGCACAAAAAAGTGCAGCCTAGAGTAATTTGGTCAAATGGGGCAGAAGCATCAGACAAAGGATAAAATAACCCAGAGATAGAAAAATAGTTATACATCCGGGGTTCAGAGGAATTGAACGGAAAGGAAGTGTTGTTACCAAGGGCAACAAGAAAGGAAGATGAGTAAAAACTTATGGGGAGGCGAGAATCAATATGCTAACGTTTTGGGTTGAGAGAGAGAGAGAAAGAAGGAAAAGAATAGGGAACCCGCTGGCTTATCACGAGAAGGTGTGCATAAAACGGAATGAAGGGTTTTTTCACATCTCACCTTTTCTACGGCGTACGACCTCCCACTGATTGGTTTTTTGGCGGTCGGGGGGGGGGGGGGGCGCCCTCAATATGGCGTTGAGTATAGTTTCAAGGAAAAAAGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>155 130 117 80 77 70 49 47 35 34 33 33 27 26 25 10 10 10 9 9 7 5 2</canonical_bands>
                <polymorphic_bands>155 130 117 80 77 70 69 49 47 33 33 27 26 25 10 10 10 9 9 7 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAGTTTTTACTTCCTGTGCT</pcr_primer_p1>
		<pcr_primer_p2>CCCGGATGTATAACTATTTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATCAGTTTTTACTTCCTGTGCTCAAAGAACCAGGGCCCAAAAAATCTGCAAAGCACGAATTCTATAGACTGTTCAATATAATTACCGCACGCCTTTCAAACCAATAATTGAGTTTTTTGGTGCATTGAAACAAAAGCTGAGCCCGCACAAAAAAGTGCAGCCTAGAGTAATTTGGTCAAATGGGGCAGAAGCATCAGACAAAGGATAAAATAACCCAGAGATAGAAAAATAGTTATACATCCGGG</canonical_amplicon>
		<polymorphic_amplicon>ATCAGTTTTTACTTCCTGTGCTCAAAGAACCAGGGCCCAAAAAATCTGCAAAGCAYGAATTCTATAGACTGTTCAATATAATTACCGCACGCCTTTCAAACCAATAATTGAGTTTTTTGGTGCATTGAAACAAAAGCTGAGCCCGCACAAAAAAGTGCAGCCTAGAGTAATTTGGTCAAATGGGGCAGAAGCATCAGACAAAGGATAAAATAACCCAGAGATAGAAAAATAGTTATACATCCGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16519</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>598132</contig_pos>
        <strand>+</strand>
        <context>GAAAATATTG[C/T]AGTCTAGTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAGGGAGGAGAATGAATAGAAAAATTGAATAATGTATTCGAAAATATTG</left_flank>
        <right_flank>AGTCTAGTCAGTTGAGAGAGACAGATGGAGGGAGGAAGACAGAACAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATAAATTCCTGAAAAACGTACCTCTCAAACAATCCTTCCAATTACAGCGTATCAAATCATCCATCAACGATCAGTCTCAAAAGCAGATGCTCAACGAGCTCGACGCGTGCAGAAGAAGTGATTGCTGTCCGCAGATGGTTCGATTCTATGGTGCAATGTTCCGCGAGGGAGACGTTTGGATTTGTATGGAAGTCATGGACACGTCACTCGACAAATTCTATCGTCACGCTTACAAGATTGGAAAGCACATTCCGGAACCATTCATCGGAAAGATGGCTCTTTCTGTGATCGAGGGATTGAATTTCATGAAGGAGCAATTGAATTTGATTCACCGTGATGTGAAACCATCGAACATCTTGCTCAATCGTCATGGACAAGTCAAAATTTGCGATTTCGGAATTTCGGGTCACTTGACAAACAGCTTGGCAAAGGTAAGACATCATAAGACTAGGGAGGAGAATGAATAGAAAAATTGAATAATGTATTCGAAAATATTGCAGTCTAGTCAGTTGAGAGAGACAGATGGAGGGAGGAAGACAGAACAATTTCTCACCCTAAAATCCAATTGGAATTTTTTTCTCAAAAAACGACGTCATTCTATTTGTCCAGAATGATGTCAAATCGTCCCACAGTCAATCGAACCATTTCGCAACACACGTGTCACATTTCGCAATCAAATCAATCGATATCGTTTTCAGACTGTTCAAGCCGGATGCAAGCCATATATGCCACCAGAGAGAATCGACGGCGAGACGAAAACTGCATATGACGTCAGAGCCGACGTGTGGAGTCTTGGAATTACCATCATCGAGATTGCTGTAGGAACTCATCCATACGCCAACTGGAAGACACCATTTGAACAGTTGAAGCAAGTCGTCAAGGAGCCACCACCAAAGCTTCCATCGGAATCTGGATTTAGTGCCGATTGTCAATTCTTCGTCAAGCGATGGTAAGAACGAGAAGAAGAGAGAGAGAGTATTGAAATAACCGAAATATAT</canonical>
            <polymorphic>AAATAAATTCCTGAAAAACGTACCTCTCAAACAATCCTTCCAATTACAGCGTATCAAATCATCCATCAACGATCAGTCTCAAAAGCAGATGCTCAACGAGCTCGACGCGTGCAGAAGAAGTGATTGCTGTCCGCAGATGGTTCGATTCTATGGTGCAATGTTCCGCGAGGGAGACGTTTGGATTTGTATGGAAGTCATGGACACGTCACTCGACAAATTCTATCGTCACGCTTACAAGATTGGAAAGCACATTCCGGAACCATTCATCGGAAAGATGGCTCTTTCTGTGATCGAGGGATTGAATTTCATGAAGGAGCAATTGAATTTGATTCACCGTGATGTGAAACCATCGAACATCTTGCTCAATCGTCATGGACAAGTCAAAATTTGCGATTTCGGAATTTCGGGTCACTTGACAAACAGCTTGGCAAAGGTAAGACATCATAAGACTAGGGAGGAGAATGAATAGAAAAATTGAATAATGTATTCGAAAATATTGYAGTCTAGTCAGTTGAGAGAGACAGATGGAGGGAGGAAGACAGAACAATTTCTCACCCTAAAATCCAATTGGAATTTTTTTCTCAAAAAACGACGTCATTCTATTTGTCCAGAATGATGTCAAATCGTCCCACAGTCAATCGAACCATTTCGCAACACACGTGTCACATTTCGCAATCAAATCAATCGATATCGTTTTCAGACTGTTCAAGCCGGATGCAAGCCATATATGCCACCAGAGAGAATCGACGGCGAGACGAAAACTGCATATGACGTCAGAGCCGACGTGTGGAGTCTTGGAATTACCATCATCGAGATTGCTGTAGGAACTCATCCATACGCCAACTGGAAGACACCATTTGAACAGTTGAAGCAAGTCGTCAAGGAGCCACCACCAAAGCTTCCATCGGAATCTGGATTTAGTGCCGATTGTCAATTCTTCGTCAAGCGATGGTAAGAACGAGAAGAAGAGAGAGAGAGTATTGAAATAACCGAAATATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>344 236 218 111 47 44</canonical_bands>
                <polymorphic_bands>562 236 111 47 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAGACTAGGGAGGAGAATGAA</pcr_primer_p1>
		<pcr_primer_p2>CGATATCGATTGATTTGATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAAGACTAGGGAGGAGAATGAATAGAAAAATTGAATAATGTATTCGAAAATATTGCAGTCTAGTCAGTTGAGAGAGACAGATGGAGGGAGGAAGACAGAACAATTTCTCACCCTAAAATCCAATTGGAATTTTTTTCTCAAAAAACGACGTCATTCTATTTGTCCAGAATGATGTCAAATCGTCCCACAGTCAATCGAACCATTTCGCAACACACGTGTCACATTTCGCAATCAAATCAATCGATATCG</canonical_amplicon>
		<polymorphic_amplicon>ATAAGACTAGGGAGGAGAATGAATAGAAAAATTGAATAATGTATTCGAAAATATTGYAGTCTAGTCAGTTGAGAGAGACAGATGGAGGGAGGAAGACAGAACAATTTCTCACCCTAAAATCCAATTGGAATTTTTTTCTCAAAAAACGACGTCATTCTATTTGTCCAGAATGATGTCAAATCGTCCCACAGTCAATCGAACCATTTCGCAACACACGTGTCACATTTCGCAATCAAATCAATCGATATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16520</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>597559</contig_pos>
        <strand>+</strand>
        <context>TAAATAAAAA[A/G]AAAGATGAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTCACAATGACTTCAGGACCGTTTCTTATCAGCCGACGCTAAATAAAAA</left_flank>
        <right_flank>AAAGATGAGTAACGCGTCTAGAAATTTGGGGCAGAGATCGGAAATAAATA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATTTTTGGCGGAAAATTTCGAAAATTGAAGAACTTTTTAAAATGAGTATTGAAAATCTGAAATTTCATATGATTCTCGTTATGATACAATGAATTTCAAATCCTGAAACTTTCTAGAAGTTGAGAAAGGTGTCATCGAAAGTTGCTGTTTTGCAGAGAAACAGGAGTTTTTTTTACTGAAAGTGATATAATTCAAACTGGTATAAACTGATATAACTCAGCTAAAACTGACGAGCGAATTCTCGAATTCTCGAAAATAGCCGAATTGGGTATTGTCAACATATCCTGTAATTTACATCAAAATCTGGATTTACAATTTGTTGAAGTTCTCTTGTAAGCGAAATATTTTAATATAATAAAAATGTCATCGAAGGATGATGCTAAAAAGAAGAAAAGTGTTTTTAATGGGAAGTAAGCACAAAGTTGATAATGATGCATGAGGAAGAGAGTTCACAATGACTTCAGGACCGTTTCTTATCAGCCGACGCTAAATAAAAAGAAAGATGAGTAACGCGTCTAGAAATTTGGGGCAGAGATCGGAAATAAATAATCTATGAGAAAATTATAATCAAAAATAAATTCCTGAAAAACGTACCTCTCAAACAATCCTTCCAATTACAGCGTATCAAATCATCCATCAACGATCAGTCTCAAAAGCAGATGCTCAACGAGCTCGACGCGTGCAGAAGAAGTGATTGCTGTCCGCAGATGGTTCGATTCTATGGTGCAATGTTCCGCGAGGGAGACGTTTGGATTTGTATGGAAGTCATGGACACGTCACTCGACAAATTCTATCGTCACGCTTACAAGATTGGAAAGCACATTCCGGAACCATTCATCGGAAAGATGGCTCTTTCTGTGATCGAGGGATTGAATTTCATGAAGGAGCAATTGAATTTGATTCACCGTGATGTGAAACCATCGAACATCTTGCTCAATCGTCATGGACAAGTCAAAATTTGCGATTTCGGAATTTCGGGTCACTTGACAAACAGCTTG</canonical>
            <polymorphic>CCATTTTTGGCGGAAAATTTCGAAAATTGAAGAACTTTTTAAAATGAGTATTGAAAATCTGAAATTTCATATGATTCTCGTTATGATACAATGAATTTCAAATCCTGAAACTTTCTAGAAGTTGAGAAAGGTGTCATCGAAAGTTGCTGTTTTGCAGAGAAACAGGAGTTTTTTTTACTGAAAGTGATATAATTCAAACTGGTATAAACTGATATAACTCAGCTAAAACTGACGAGCGAATTCTCGAATTCTCGAAAATAGCCGAATTGGGTATTGTCAACATATCCTGTAATTTACATCAAAATCTGGATTTACAATTTGTTGAAGTTCTCTTGTAAGCGAAATATTTTAATATAATAAAAATGTCATCGAAGGATGATGCTAAAAAGAAGAAAAGTGTTTTTAATGGGAAGTAAGCACAAAGTTGATAATGATGCATGAGGAAGAGAGTTCACAATGACTTCAGGACCGTTTCTTATCAGCCGACGCTAAATAAAAARAAAGATGAGTAACGCGTCTAGAAATTTGGGGCAGAGATCGGAAATAAATAATCTATGAGAAAATTATAATCAAAAATAAATTCCTGAAAAACGTACCTCTCAAACAATCCTTCCAATTACAGCGTATCAAATCATCCATCAACGATCAGTCTCAAAAGCAGATGCTCAACGAGCTCGACGCGTGCAGAAGAAGTGATTGCTGTCCGCAGATGGTTCGATTCTATGGTGCAATGTTCCGCGAGGGAGACGTTTGGATTTGTATGGAAGTCATGGACACGTCACTCGACAAATTCTATCGTCACGCTTACAAGATTGGAAAGCACATTCCGGAACCATTCATCGGAAAGATGGCTCTTTCTGTGATCGAGGGATTGAATTTCATGAAGGAGCAATTGAATTTGATTCACCGTGATGTGAAACCATCGAACATCTTGCTCAATCGTCATGGACAAGTCAAAATTTGCGATTTCGGAATTTCGGGTCACTTGACAAACAGCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGGATGATGCTAAAAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>GTAATTGGAAGGATTGTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGGATGATGCTAAAAAGAAGAAAAGTGTTTTTAATGGGAAGTAAGCACAAAGTTGATAATGATGCATGAGGAAGAGAGTTCACAATGACTTCAGGACCGTTTCTTATCAGCCGACGCTAAATAAAAAGAAAGATGAGTAACGCGTCTAGAAATTTGGGGCAGAGATCGGAAATAAATAATCTATGAGAAAATTATAATCAAAAATAAATTCCTGAAAAACGTACCTCTCAAACAATCCTTCCAATTAC</canonical_amplicon>
		<polymorphic_amplicon>GAAGGATGATGCTAAAAAGAAGAAAAGTGTTTTTAATGGGAAGTAAGCACAAAGTTGATAATGATGCATGAGGAAGAGAGTTCACAATGACTTCAGGACCGTTTCTTATCAGCCGACGCTAAATAAAAARAAAGATGAGTAACGCGTCTAGAAATTTGGGGCAGAGATCGGAAATAAATAATCTATGAGAAAATTATAATCAAAAATAAATTCCTGAAAAACGTACCTCTCAAACAATCCTTCCAATTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16521</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>16871</contig_pos>
        <strand></strand>
        <context>TTCAGACTTT[C/A]GAACGAGTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTTCAAACACTTTCTCTTTATTTCGTTTCTAAGGCGCGTTTCAGACTTT</left_flank>
        <right_flank>GAACGAGTGAAGAAAAATTTTGAAATTCGAAATTCGATTCTTACGTTTTT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCATCTTTCAACAGAACTGTCACATCCAGCACTCAGAACTATGGAACCCCAGGATCCGGAAACCGTGTTCTCAAAATCGTTACTGAGATGTCATCGTCATCAGTAGCCAGTGGCCTCTCTCCATACGGTCAGAATGCCGCTTCAACAATTCGTGACAACCGTGAACGTGAGAAAAAAGAGATTATGGAGTTGAACGACCGTCTTGCTGGATACATCGAGAAGGTCAGATTTTTGGAGGCACAGAACAGAAAGTTGGGAGCTGATTTGCAAATGCTCCAAGGTAGATTCGGAAAGAGCACCGGATCTGTCAAAGTGATGTATGAGCTGGAGATCACAACTGCACAGACAGTTGTGAAACAGACTGGAAAGGACAAGGAAGAGGCTGAAAGAGAGATCCGCAAGTTACAAGATCAGTTGGATGAGTTCCGTAAGAAGTGAGTTGTAAAGATTTTCAAACACTTTCTCTTTATTTCGTTTCTAAGGCGCGTTTCAGACTTTCGAACGAGTGAAGAAAAATTTTGAAATTCGAAATTCGATTCTTACGTTTTTAGAGGTATATTTGAATAGTAATATTGAATTGTCAATGCAGAGAATTTTTTTCGTTTCAAAAAAAGATTCAGAATTTTCAGTAGCTTTATGACTATTGTCGGTCTCATTGTCTTATGACTTAAATTATGGTTTTCAGGTGGGAGGAAGCCAACAGCGGACGTGCCGAGGATCGCCTAAAGATTGATGAGCTCCTCGTAACACTTTCCGGACTGGAAGCCGAAATTAACCTTCTGAAGAGACGTATGCCCTTCTGGAGGAAGAAATTGCACGTCTCAGAAAAGAAAATGCTAGACTCCAAGCTGAACTTCAACGTGTCAGAGTTGTAAGTTCATTTTAGAATGTTTGCTTTTTACATTTGTTTTTACATTACGTTGACCCATTCACTCATCTGAATGTTTCAGCAACTCGACCAAGAGACCCTTCTTCGCATTGACAACCAGAACAGAGTCA</canonical>
            <polymorphic>ACCATCTTTCAACAGAACTGTCACATCCAGCACTCAGAACTATGGAACCCCAGGATCCGGAAACCGTGTTCTCAAAATCGTTACTGAGATGTCATCGTCATCAGTAGCCAGTGGCCTCTCTCCATACGGTCAGAATGCCGCTTCAACAATTCGTGACAACCGTGAACGTGAGAAAAAAGAGATTATGGAGTTGAACGACCGTCTTGCTGGATACATCGAGAAGGTCAGATTTTTGGAGGCACAGAACAGAAAGTTGGGAGCTGATTTGCAAATGCTCCAAGGTAGATTCGGAAAGAGCACCGGATCTGTCAAAGTGATGTATGAGCTGGAGATCACAACTGCACAGACAGTTGTGAAACAGACTGGAAAGGACAAGGAAGAGGCTGAAAGAGAGATCCGCAAGTTACAAGATCAGTTGGATGAGTTCCGTAAGAAGTGAGTTGTAAAGATTTTCAAACACTTTCTCTTTATTTCGTTTCTAAGGCGCGTTTCAGACTTTMGAACGAGTGAAGAAAAATTTTGAAATTCGAAATTCGATTCTTACGTTTTTAGAGGTATATTTGAATAGTAATATTGAATTGTCAATGCAGAGAATTTTTTTCGTTTCAAAAAAAGATTCAGAATTTTCAGTAGCTTTATGACTATTGTCGGTCTCATTGTCTTATGACTTAAATTATGGTTTTCAGGTGGGAGGAAGCCAACAGCGGACGTGCCGAGGATCGCCTAAAGATTGATGAGCTCCTCGTAACACTTTCCGGACTGGAAGCCGAAATTAACCTTCTGAAGAGACGTATGCCCTTCTGGAGGAAGAAATTGCACGTCTCAGAAAAGAAAATGCTAGACTCCAAGCTGAACTTCAACGTGTCAGAGTTGTAAGTTCATTTTAGAATGTTTGCTTTTTACATTTGTTTTTACATTACGTTGACCCATTCACTCATCTGAATGTTTCAGCAACTCGACCAAGAGACCCTTCTTCGCATTGACAACCAGAACAGAGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>499 473 28</canonical_bands>
                <polymorphic_bands>527 473</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>422 283 217 43 28 7</canonical_bands>
                <polymorphic_bands>422 311 217 43 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACAAGATCAGTTGGATGAGTT</pcr_primer_p1>
		<pcr_primer_p2>GACCGACAATAGTCATAAAGCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTACAAGATCAGTTGGATGAGTTCCGTAAGAAGTGAGTTGTAAAGATTTTCAAACACTTTCTCTTTATTTCGTTTCTAAGGCGCGTTTCAGACTTTCGAACGAGTGAAGAAAAATTTTGAAATTCGAAATTCGATTCTTACGTTTTTAGAGGTATATTTGAATAGTAATATTGAATTGTCAATGCAGAGAATTTTTTTCGTTTCAAAAAAAGATTCAGAATTTTCAGTAGCTTTATGACTATTGTCGGTC</canonical_amplicon>
		<polymorphic_amplicon>TTACAAGATCAGTTGGATGAGTTCCGTAAGAAGTGAGTTGTAAAGATTTTCAAACACTTTCTCTTTATTTCGTTTCTAAGGCGCGTTTCAGACTTTMGAACGAGTGAAGAAAAATTTTGAAATTCGAAATTCGATTCTTACGTTTTTAGAGGTATATTTGAATAGTAATATTGAATTGTCAATGCAGAGAATTTTTTTCGTTTCAAAAAAAGATTCAGAATTTTCAGTAGCTTTATGACTATTGTCGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16523</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>34831</contig_pos>
        <strand>+</strand>
        <context>AATAGCCACG[C/T]CCCCAAATGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTTTCCCATCCTTCTTCCGATGCGAGTCCATGAAACGTAATAGCCACG</left_flank>
        <right_flank>CCCCAAATGTTTTTTCGACACAAAGGCGCAAAGGCATGAATTGTCAAGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCACCTCCAAGCATTCTGACCCCGCCTAGTAATTGTCTTCTTTTTTTACCAGCCACACTAGCTTCCCGAAAAAAACACAACATTTTCAGCGCGTCCATTGATCTTTGTGACTCGTAGTCTGCTCGTGGGAGTCCCCGGTAGTCAAAACAACTCGTAATCCGTTTTTCGTTGTCTCCATTGTCTAAACCTCCACGTATAGAAGATTCATTCTATATTCCAATTAGCTTCCCCGAGACGCGTGTCTTCCTTTCTTCTTCCATTTTTTGCTCTCTGACATATTCCTACATTCTTTCATTTACCGCTTCCTTCAATTCTCCGCTTGTTGTTTTATGTCTATCTCCACCTGGCACCGCCCCTCCTTCCATCTCTTTCACTTTTTTTTGGGTGCACACAAAACAATAAATTATTCGAAACAGCCATTGAAACATCCCTTTCGGAAATTGGCCCCGGTTTTTCCCATCCTTCTTCCGATGCGAGTCCATGAAACGTAATAGCCACGTCCCCAAATGTTTTTTCGACACAAAGGCGCAAAGGCATGAATTGTCAAGAAGATGAGGAGCATCGTTCTAAGAAGCTTTTTGCGACTAAAAAGCAGGAGAAGTTGTTTTTTGTTTACGGCTTCCCACCCATATATTTTCTGTCTGGGCGGCTTGTTTTCTCCTTTCCTGGTCATAGCTTTTACGAGAGGAAAACCGAAAATAGGGTTCTGAATTATTTTTCGTATTTTTTGCGAAGTAGTGAACCTCTTTTAGGTGATTCTTTCTACGTTTACTATTTTTCTTCATTGTTTTAAAATAATCTCTTTTAAATTCTCATGAAGCAATAAAAAATTGGCTCTACTCTTCCTCGCCACTCATTCTTTTTTCTGCTCGTCAACGTCTTCTGGTTTTTCTTTGCCCAAGCGTGTACCTCGATTCAGCCAGTTTTTGCCGCGGCTCCTCTTCAAGAAACGCTCAGGGGCGCGCCCGGTGTCAGCTCCTTTTCGATATGGTCTCTTCAC</canonical>
            <polymorphic>CCACCTCCAAGCATTCTGACCCCGCCTAGTAATTGTCTTCTTTTTTTACCAGCCACACTAGCTTCCCGAAAAAAACACAACATTTTCAGCGCGTCCATTGATCTTTGTGACTCGTAGTCTGCTCGTGGGAGTCCCCGGTAGTCAAAACAACTCGTAATCCGTTTTTCGTTGTCTCCATTGTCTAAACCTCCACGTATAGAAGATTCATTCTATATTCCAATTAGCTTCCCCGAGACGCGTGTCTTCCTTTCTTCTTCCATTTTTTGCTCTCTGACATATTCCTACATTCTTTCATTTACCGCTTCCTTCAATTCTCCGCTTGTTGTTTTATGTCTATCTCCACCTGGCACCGCCCCTCCTTCCATCTCTTTCACTTTTTTTTGGGTGCACACAAAACAATAAATTATTCGAAACAGCCATTGAAACATCCCTTTCGGAAATTGGCCCCGGTTTTTCCCATCCTTCTTCCGATGCGAGTCCATGAAACGTAATAGCCACGYCCCCAAATGTTTTTTCGACACAAAGGCGCAAAGGCATGAATTGTCAAGAAGATGAGGAGCATCGTTCTAAGAAGCTTTTTGCGACTAAAAAGCAGGAGAAGTTGTTTTTTGTTTACGGCTTCCCACCCATATATTTTCTGTCTGGGCGGCTTGTTTTCTCCTTTCCTGGTCATAGCTTTTACGAGAGGAAAACCGAAAATAGGGTTCTGAATTATTTTTCGTATTTTTTGCGAAGTAGTGAACCTCTTTTAGGTGATTCTTTCTACGTTTACTATTTTTCTTCATTGTTTTAAAATAATCTCTTTTAAATTCTCATGAAGCAATAAAAAATTGGCTCTACTCTTCCTCGCCACTCATTCTTTTTTCTGCTCGTCAACGTCTTCTGGTTTTTCTTTGCCCAAGCGTGTACCTCGATTCAGCCAGTTTTTGCCGCGGCTCCTCTTCAAGAAACGCTCAGGGGCGCGCCCGGTGTCAGCTCCTTTTCGATATGGTCTCTTCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>294 268 192 124 111 11</canonical_bands>
                <polymorphic_bands>294 279 192 124 111</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTTCCATCTCTTTCACTTT</pcr_primer_p1>
		<pcr_primer_p2>AACAACTTCTCCTGCTTTTTAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCTTCCATCTCTTTCACTTTTTTTTGGGTGCACACAAAACAATAAATTATTCGAAACAGCCATTGAAACATCCCTTTCGGAAATTGGCCCCGGTTTTTCCCATCCTTCTTCCGATGCGAGTCCATGAAACGTAATAGCCACGTCCCCAAATGTTTTTTCGACACAAAGGCGCAAAGGCATGAATTGTCAAGAAGATGAGGAGCATCGTTCTAAGAAGCTTTTTGCGACTAAAAAGCAGGAGAAGTTGTT</canonical_amplicon>
		<polymorphic_amplicon>TCCTTCCATCTCTTTCACTTTTTTTTGGGTGCACACAAAACAATAAATTATTCGAAACAGCCATTGAAACATCCCTTTCGGAAATTGGCCCCGGTTTTTCCCATCCTTCTTCCGATGCGAGTCCATGAAACGTAATAGCCACGYCCCCAAATGTTTTTTCGACACAAAGGCGCAAAGGCATGAATTGTCAAGAAGATGAGGAGCATCGTTCTAAGAAGCTTTTTGCGACTAAAAAGCAGGAGAAGTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16524</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>34888</contig_pos>
        <strand>+</strand>
        <context>AGAAGATGAG[A/G]AGCATCGTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGTTTTTTCGACACAAAGGCGCAAAGGCATGAATTGTCAAGAAGATGAG</left_flank>
        <right_flank>AGCATCGTTCTAAGAAGCTTTTTGCGACTAAAAAGCAGGAGAAGTTGTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGCTTCCCGAAAAAAACACAACATTTTCAGCGCGTCCATTGATCTTTGTGACTCGTAGTCTGCTCGTGGGAGTCCCCGGTAGTCAAAACAACTCGTAATCCGTTTTTCGTTGTCTCCATTGTCTAAACCTCCACGTATAGAAGATTCATTCTATATTCCAATTAGCTTCCCCGAGACGCGTGTCTTCCTTTCTTCTTCCATTTTTTGCTCTCTGACATATTCCTACATTCTTTCATTTACCGCTTCCTTCAATTCTCCGCTTGTTGTTTTATGTCTATCTCCACCTGGCACCGCCCCTCCTTCCATCTCTTTCACTTTTTTTTGGGTGCACACAAAACAATAAATTATTCGAAACAGCCATTGAAACATCCCTTTCGGAAATTGGCCCCGGTTTTTCCCATCCTTCTTCCGATGCGAGTCCATGAAACGTAATAGCCACGTCCCCAAATGTTTTTTCGACACAAAGGCGCAAAGGCATGAATTGTCAAGAAGATGAGGAGCATCGTTCTAAGAAGCTTTTTGCGACTAAAAAGCAGGAGAAGTTGTTTTTTGTTTACGGCTTCCCACCCATATATTTTCTGTCTGGGCGGCTTGTTTTCTCCTTTCCTGGTCATAGCTTTTACGAGAGGAAAACCGAAAATAGGGTTCTGAATTATTTTTCGTATTTTTTGCGAAGTAGTGAACCTCTTTTAGGTGATTCTTTCTACGTTTACTATTTTTCTTCATTGTTTTAAAATAATCTCTTTTAAATTCTCATGAAGCAATAAAAAATTGGCTCTACTCTTCCTCGCCACTCATTCTTTTTTCTGCTCGTCAACGTCTTCTGGTTTTTCTTTGCCCAAGCGTGTACCTCGATTCAGCCAGTTTTTGCCGCGGCTCCTCTTCAAGAAACGCTCAGGGGCGCGCCCGGTGTCAGCTCCTTTTCGATATGGTCTCTTCACTTCCAGTTTTCTCTGATGCTTCTTCGTGCGGCTCGTCTATCGATTATAAGATGAGCA</canonical>
            <polymorphic>CTAGCTTCCCGAAAAAAACACAACATTTTCAGCGCGTCCATTGATCTTTGTGACTCGTAGTCTGCTCGTGGGAGTCCCCGGTAGTCAAAACAACTCGTAATCCGTTTTTCGTTGTCTCCATTGTCTAAACCTCCACGTATAGAAGATTCATTCTATATTCCAATTAGCTTCCCCGAGACGCGTGTCTTCCTTTCTTCTTCCATTTTTTGCTCTCTGACATATTCCTACATTCTTTCATTTACCGCTTCCTTCAATTCTCCGCTTGTTGTTTTATGTCTATCTCCACCTGGCACCGCCCCTCCTTCCATCTCTTTCACTTTTTTTTGGGTGCACACAAAACAATAAATTATTCGAAACAGCCATTGAAACATCCCTTTCGGAAATTGGCCCCGGTTTTTCCCATCCTTCTTCCGATGCGAGTCCATGAAACGTAATAGCCACGTCCCCAAATGTTTTTTCGACACAAAGGCGCAAAGGCATGAATTGTCAAGAAGATGAGRAGCATCGTTCTAAGAAGCTTTTTGCGACTAAAAAGCAGGAGAAGTTGTTTTTTGTTTACGGCTTCCCACCCATATATTTTCTGTCTGGGCGGCTTGTTTTCTCCTTTCCTGGTCATAGCTTTTACGAGAGGAAAACCGAAAATAGGGTTCTGAATTATTTTTCGTATTTTTTGCGAAGTAGTGAACCTCTTTTAGGTGATTCTTTCTACGTTTACTATTTTTCTTCATTGTTTTAAAATAATCTCTTTTAAATTCTCATGAAGCAATAAAAAATTGGCTCTACTCTTCCTCGCCACTCATTCTTTTTTCTGCTCGTCAACGTCTTCTGGTTTTTCTTTGCCCAAGCGTGTACCTCGATTCAGCCAGTTTTTGCCGCGGCTCCTCTTCAAGAAACGCTCAGGGGCGCGCCCGGTGTCAGCTCCTTTTCGATATGGTCTCTTCACTTCCAGTTTTCTCTGATGCTTCTTCGTGCGGCTCGTCTATCGATTATAAGATGAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGTCCATGAAACGTAATAG</pcr_primer_p1>
		<pcr_primer_p2>AAATACGAAAAATAATTCAGAACC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CGAGTCCATGAAACGTAATAGCCACGTCCCCAAATGTTTTTTCGACACAAAGGCGCAAAGGCATGAATTGTCAAGAAGATGAGGAGCATCGTTCTAAGAAGCTTTTTGCGACTAAAAAGCAGGAGAAGTTGTTTTTTGTTTACGGCTTCCCACCCATATATTTTCTGTCTGGGCGGCTTGTTTTCTCCTTTCCTGGTCATAGCTTTTACGAGAGGAAAACCGAAAATAGGGTTCTGAATTATTTTTCGTATTT</canonical_amplicon>
		<polymorphic_amplicon>CGAGTCCATGAAACGTAATAGCCACGTCCCCAAATGTTTTTTCGACACAAAGGCGCAAAGGCATGAATTGTCAAGAAGATGAGRAGCATCGTTCTAAGAAGCTTTTTGCGACTAAAAAGCAGGAGAAGTTGTTTTTTGTTTACGGCTTCCCACCCATATATTTTCTGTCTGGGCGGCTTGTTTTCTCCTTTCCTGGTCATAGCTTTTACGAGAGGAAAACCGAAAATAGGGTTCTGAATTATTTTTCGTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16525</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>35229</contig_pos>
        <strand>+</strand>
        <context>TTTTCTTTGC[C/T]CAAGCGTGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGCCACTCATTCTTTTTTCTGCTCGTCAACGTCTTCTGGTTTTTCTTTGC</left_flank>
        <right_flank>CAAGCGTGTACCTCGATTCAGCCAGTTTTTGCCGCGGCTCCTCTTCAAGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAATTATTCGAAACAGCCATTGAAACATCCCTTTCGGAAATTGGCCCCGGTTTTTCCCATCCTTCTTCCGATGCGAGTCCATGAAACGTAATAGCCACGTCCCCAAATGTTTTTTCGACACAAAGGCGCAAAGGCATGAATTGTCAAGAAGATGAGGAGCATCGTTCTAAGAAGCTTTTTGCGACTAAAAAGCAGGAGAAGTTGTTTTTTGTTTACGGCTTCCCACCCATATATTTTCTGTCTGGGCGGCTTGTTTTCTCCTTTCCTGGTCATAGCTTTTACGAGAGGAAAACCGAAAATAGGGTTCTGAATTATTTTTCGTATTTTTTGCGAAGTAGTGAACCTCTTTTAGGTGATTCTTTCTACGTTTACTATTTTTCTTCATTGTTTTAAAATAATCTCTTTTAAATTCTCATGAAGCAATAAAAAATTGGCTCTACTCTTCCTCGCCACTCATTCTTTTTTCTGCTCGTCAACGTCTTCTGGTTTTTCTTTGCCCAAGCGTGTACCTCGATTCAGCCAGTTTTTGCCGCGGCTCCTCTTCAAGAAACGCTCAGGGGCGCGCCCGGTGTCAGCTCCTTTTCGATATGGTCTCTTCACTTCCAGTTTTCTCTGATGCTTCTTCGTGCGGCTCGTCTATCGATTATAAGATGAGCAGCTTCCTCACGGCGCCACGGCGCGTAGGAAGAATTGTGAGCTCGGGTTTTTTTTGCGCTCTTCCTCCTTCCCAATTCTGTCCTCTTACCGATGCATAAGAAGAAAAGCACAAATGCTCTTTCTCTGTGTCGCATCGGAGCAGGAGAAGATTTGAAGAGAGAAAAAGCAAAAAAGGAAGAATACAAAGATTGAAAGCAATGAGTAGAACGGAGACATATATAGGAAGGGGGTGCACATTTTGCTCTCTCTCTCTTTTTTGCTCTCTCTTACAAGCAAACATTTGAACTCATTCTCATTTGTTATCCAAAATACTTACTCGAAAATTCTTGAAAAGAGCACTG</canonical>
            <polymorphic>ATAAATTATTCGAAACAGCCATTGAAACATCCCTTTCGGAAATTGGCCCCGGTTTTTCCCATCCTTCTTCCGATGCGAGTCCATGAAACGTAATAGCCACGTCCCCAAATGTTTTTTCGACACAAAGGCGCAAAGGCATGAATTGTCAAGAAGATGAGGAGCATCGTTCTAAGAAGCTTTTTGCGACTAAAAAGCAGGAGAAGTTGTTTTTTGTTTACGGCTTCCCACCCATATATTTTCTGTCTGGGCGGCTTGTTTTCTCCTTTCCTGGTCATAGCTTTTACGAGAGGAAAACCGAAAATAGGGTTCTGAATTATTTTTCGTATTTTTTGCGAAGTAGTGAACCTCTTTTAGGTGATTCTTTCTACGTTTACTATTTTTCTTCATTGTTTTAAAATAATCTCTTTTAAATTCTCATGAAGCAATAAAAAATTGGCTCTACTCTTCCTCGCCACTCATTCTTTTTTCTGCTCGTCAACGTCTTCTGGTTTTTCTTTGCYCAAGCGTGTACCTCGATTCAGCCAGTTTTTGCCGCGGCTCCTCTTCAAGAAACGCTCAGGGGCGCGCCCGGTGTCAGCTCCTTTTCGATATGGTCTCTTCACTTCCAGTTTTCTCTGATGCTTCTTCGTGCGGCTCGTCTATCGATTATAAGATGAGCAGCTTCCTCACGGCGCCACGGCGCGTAGGAAGAATTGTGAGCTCGGGTTTTTTTTGCGCTCTTCCTCCTTCCCAATTCTGTCCTCTTACCGATGCATAAGAAGAAAAGCACAAATGCTCTTTCTCTGTGTCGCATCGGAGCAGGAGAAGATTTGAAGAGAGAAAAAGCAAAAAAGGAAGAATACAAAGATTGAAAGCAATGAGTAGAACGGAGACATATATAGGAAGGGGGTGCACATTTTGCTCTCTCTCTCTTTTTTGCTCTCTCTTACAAGCAAACATTTGAACTCATTCTCATTTGTTATCCAAAATACTTACTCGAAAATTCTTGAAAAGAGCACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCTCATGAAGCAATAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GCTGCTCATCTTATAATCGATAG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAATTCTCATGAAGCAATAAAAAATTGGCTCTACTCTTCCTCGCCACTCATTCTTTTTTCTGCTCGTCAACGTCTTCTGGTTTTTCTTTGCCCAAGCGTGTACCTCGATTCAGCCAGTTTTTGCCGCGGCTCCTCTTCAAGAAACGCTCAGGGGCGCGCCCGGTGTCAGCTCCTTTTCGATATGGTCTCTTCACTTCCAGTTTTCTCTGATGCTTCTTCGTGCGGCTCGTCTATCGATTATAAGATGAGCAGC</canonical_amplicon>
		<polymorphic_amplicon>AAATTCTCATGAAGCAATAAAAAATTGGCTCTACTCTTCCTCGCCACTCATTCTTTTTTCTGCTCGTCAACGTCTTCTGGTTTTTCTTTGCYCAAGCGTGTACCTCGATTCAGCCAGTTTTTGCCGCGGCTCCTCTTCAAGAAACGCTCAGGGGCGCGCCCGGTGTCAGCTCCTTTTCGATATGGTCTCTTCACTTCCAGTTTTCTCTGATGCTTCTTCGTGCGGCTCGTCTATCGATTATAAGATGAGCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16526</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>36550</contig_pos>
        <strand>+</strand>
        <context>AAAACCGAAA[A/T]TATTAAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTTCGGGTCTTCATAATCACTTTGCTCTGATTTGAAGAAAAAACCGAAA</left_flank>
        <right_flank>TATTAAATTTTTCTCCGAGATACCGATCTGTTTCAAACCTTTCTATACCA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGCCTGGTCTGATGTTTGATCATGGTTCTTACTGAGTATGGTAGGAGTAACAGAAAAGAGTCGTGAGTGACTGGAGGACCAAACCGTGCATCATATTGAAAATTACAACCGAAAGAAACAGCTTTGTTTTCGACTATCATATCAAACACAAAAATTGCTGAAAGCTGGAAAAATATAAGCTATTTTGGATCCTTAACTCCTGTTTTGAAATATTTCACTTTCCCAATTGTTGCAAAAATATGTTGACCAGGAGGTTCGAAAAAAAGTGAAGCAACGCAGATGCCCTGGTCGCTTTTTTTTTACACAGAAGCTTTATTTTGCACGCCTACTACTGGGTGTCCCACATTTCTTTTTTTTGTTTACGACTTGAGTTCTATTGGGCAGCTGTCAGTGTTCTTTGACAGGAAGGCGCCCGGCCGGCCATCTAATTTTTTGCAGCTTGAGCCATGTTTCGGGTCTTCATAATCACTTTGCTCTGATTTGAAGAAAAAACCGAAATTATTAAATTTTTCTCCGAGATACCGATCTGTTTCAAACCTTTCTATACCAGAACATAAAGTGAATACCGCGAACAAAAACGGCCTTGGAACCGACGAAACACAGGTGCCTCGTTTCTAATTTTATGGAGATTCCCTCTGTGTTCTATTTGAATTTTACTTATTCGGTTTTCCACATCTAGCGTTAGTTACCACAAACCAAGTTTTGATATTTTTCAGTCATAGAAAAAATTGATTTCGTTTTTTTTGCTTCCGTTTTTTTTTCGGCTCTTCCGTTTTTCGACATGTGTACCAAAAGCTAATAAGACGGGCGGGCGCCTCCTCTGCAGAGCCCAATGAATCAGAGCCAATGAAATTTCGAATTTTCCTTTTTCTTTTCTCCAAATCACACATGTCCCTTCCTTTTTTTCAAGCCATTCTCGTTTTTTTTCTCAGAAAAAAATCACTTGATATCATAGCTTTTTTCGTATTATTTGTGGTCGAGAAAGAAAGCGACGACACA</canonical>
            <polymorphic>CTGCCTGGTCTGATGTTTGATCATGGTTCTTACTGAGTATGGTAGGAGTAACAGAAAAGAGTCGTGAGTGACTGGAGGACCAAACCGTGCATCATATTGAAAATTACAACCGAAAGAAACAGCTTTGTTTTCGACTATCATATCAAACACAAAAATTGCTGAAAGCTGGAAAAATATAAGCTATTTTGGATCCTTAACTCCTGTTTTGAAATATTTCACTTTCCCAATTGTTGCAAAAATATGTTGACCAGGAGGTTCGAAAAAAAGTGAAGCAACGCAGATGCCCTGGTCGCTTTTTTTTTACACAGAAGCTTTATTTTGCACGCCTACTACTGGGTGTCCCACATTTCTTTTTTTTGTTTACGACTTGAGTTCTATTGGGCAGCTGTCAGTGTTCTTTGACAGGAAGGCGCCCGGCCGGCCATCTAATTTTTTGCAGCTTGAGCCATGTTTCGGGTCTTCATAATCACTTTGCTCTGATTTGAAGAAAAAACCGAAAWTATTAAATTTTTCTCCGAGATACCGATCTGTTTCAAACCTTTCTATACCAGAACATAAAGTGAATACCGCGAACAAAAACGGCCTTGGAACCGACGAAACACAGGTGCCTCGTTTCTAATTTTATGGAGATTCCCTCTGTGTTCTATTTGAATTTTACTTATTCGGTTTTCCACATCTAGCGTTAGTTACCACAAACCAAGTTTTGATATTTTTCAGTCATAGAAAAAATTGATTTCGTTTTTTTTGCTTCCGTTTTTTTTTCGGCTCTTCCGTTTTTCGACATGTGTACCAAAAGCTAATAAGACGGGCGGGCGCCTCCTCTGCAGAGCCCAATGAATCAGAGCCAATGAAATTTCGAATTTTCCTTTTTCTTTTCTCCAAATCACACATGTCCCTTCCTTTTTTTCAAGCCATTCTCGTTTTTTTTCTCAGAAAAAAATCACTTGATATCATAGCTTTTTTCGTATTATTTGTGGTCGAGAAAGAAAGCGACGACACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>202 142 124 112 101 77 72 70 52 33 8 7</canonical_bands>
                <polymorphic_bands>202 142 124 112 101 78 77 72 52 33 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTTTCGGGTCTTCATAATC</pcr_primer_p1>
		<pcr_primer_p2>TTGTGGTAACTAACGCTAGATGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATGTTTCGGGTCTTCATAATCACTTTGCTCTGATTTGAAGAAAAAACCGAAATTATTAAATTTTTCTCCGAGATACCGATCTGTTTCAAACCTTTCTATACCAGAACATAAAGTGAATACCGCGAACAAAAACGGCCTTGGAACCGACGAAACACAGGTGCCTCGTTTCTAATTTTATGGAGATTCCCTCTGTGTTCTATTTGAATTTTACTTATTCGGTTTTCCACATCTAGCGTTAGTTACCACAA</canonical_amplicon>
		<polymorphic_amplicon>ATGTTTCGGGTCTTCATAATCACTTTGCTCTGATTTGAAGAAAAAACCGAAAWTATTAAATTTTTCTCCGAGATACCGATCTGTTTCAAACCTTTCTATACCAGAACATAAAGTGAATACCGCGAACAAAAACGGCCTTGGAACCGACGAAACACAGGTGCCTCGTTTCTAATTTTATGGAGATTCCCTCTGTGTTCTATTTGAATTTTACTTATTCGGTTTTCCACATCTAGCGTTAGTTACCACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16527</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>68546</contig_pos>
        <strand></strand>
        <context>TTTGAAAATT[G/T]TTTTTTTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCCACATTGCTGCAATTATCTATATTTTGTTATTTTTTTTTGAAAATT</left_flank>
        <right_flank>TTTTTTTGAAAAAACAAGGAGTGCTTTGTTCTCTTTCAGCAAACTCGTGC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCTACTCTTTTTCTACTTGTTCTTCTCATTTTCTCACCACTTTTCTTCTTCTTTATCTTCTACCACCAAAGATTTTCACTAGTCTTTTTTTTGTTTTTTAACACCCGTTTGTCCTTGTGCCCTTTGAGTTTGTAGGGCAAAAATATTTATAAAAATTGCCTCCCGGAAAACTCAAAATAAAATATAAGGCAGGGAGCGTGATGTCTTAACAACCGAATGTCCTCGATTTGAACTTCTAGTCCTGCTAAGTTGTTTAAAAAAGTTTTTATGATCCAACGATTTAGGTCGTAAAATTCAGCGTATTAGCCTAAATTGACCATTCAAAAACAAGCTTCTTTAAAGTTCATAACAGTTTGAAATTAACCTCTCTAGATTAGTTTTGGAATAGAAACCTAAAAAAGTGTAAATTACTGAATTCCAATCTTTCGGCTAATTAGGGAATTTCATTTTCCACATTGCTGCAATTATCTATATTTTGTTATTTTTTTTTGAAAATTGTTTTTTTGAAAAAACAAGGAGTGCTTTGTTCTCTTTCAGCAAACTCGTGCATTTCCAGTGCTTTCTTATCAAAACAAAAATATCTGCACTAATAGGAATTGCCCAGTGAACGTTTGTTTTTGTTTGATCTAGAAGTACCGTCTCTTTTCTGAATAATGTCAGAAACCACAACGTTTGAAAGTCTATTTAATCGAAAAATTTTAAATATGTAGTCGAAAAATTGTTCTTATAATCTAATGCAGATTATGCAATACAATCAAACAAAGTGCTCTCTTCCTTTTTGAAATCCAAGTATCCCTTTTTCTCATTCCCTAATCCGTTGTTGGATTTGAGCCAAAGGATCACAGAAGCATCCGTCTTGTACTCCCTTTTCAGTGAGAACTCCACTAATAATATATTCCATGCATACTTTCTTTTGTCCTTTTCCTGGAACTCTCTGGTCACGTCTTTGAACTACCATAACATTAGTCTAACGCTTTTGCCCTTTACCGGAAACAAAG</canonical>
            <polymorphic>CTCCTACTCTTTTTCTACTTGTTCTTCTCATTTTCTCACCACTTTTCTTCTTCTTTATCTTCTACCACCAAAGATTTTCACTAGTCTTTTTTTTGTTTTTTAACACCCGTTTGTCCTTGTGCCCTTTGAGTTTGTAGGGCAAAAATATTTATAAAAATTGCCTCCCGGAAAACTCAAAATAAAATATAAGGCAGGGAGCGTGATGTCTTAACAACCGAATGTCCTCGATTTGAACTTCTAGTCCTGCTAAGTTGTTTAAAAAAGTTTTTATGATCCAACGATTTAGGTCGTAAAATTCAGCGTATTAGCCTAAATTGACCATTCAAAAACAAGCTTCTTTAAAGTTCATAACAGTTTGAAATTAACCTCTCTAGATTAGTTTTGGAATAGAAACCTAAAAAAGTGTAAATTACTGAATTCCAATCTTTCGGCTAATTAGGGAATTTCATTTTCCACATTGCTGCAATTATCTATATTTTGTTATTTTTTTTTGAAAATTKTTTTTTTGAAAAAACAAGGAGTGCTTTGTTCTCTTTCAGCAAACTCGTGCATTTCCAGTGCTTTCTTATCAAAACAAAAATATCTGCACTAATAGGAATTGCCCAGTGAACGTTTGTTTTTGTTTGATCTAGAAGTACCGTCTCTTTTCTGAATAATGTCAGAAACCACAACGTTTGAAAGTCTATTTAATCGAAAAATTTTAAATATGTAGTCGAAAAATTGTTCTTATAATCTAATGCAGATTATGCAATACAATCAAACAAAGTGCTCTCTTCCTTTTTGAAATCCAAGTATCCCTTTTTCTCATTCCCTAATCCGTTGTTGGATTTGAGCCAAAGGATCACAGAAGCATCCGTCTTGTACTCCCTTTTCAGTGAGAACTCCACTAATAATATATTCCATGCATACTTTCTTTTGTCCTTTTCCTGGAACTCTCTGGTCACGTCTTTGAACTACCATAACATTAGTCTAACGCTTTTGCCCTTTACCGGAAACAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGCTTCTTTAAAGTTCATAACAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTTTTGATAAGAAAGCACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAGCTTCTTTAAAGTTCATAACAGTTTGAAATTAACCTCTCTAGATTAGTTTTGGAATAGAAACCTAAAAAAGTGTAAATTACTGAATTCCAATCTTTCGGCTAATTAGGGAATTTCATTTTCCACATTGCTGCAATTATCTATATTTTGTTATTTTTTTTTGAAAATTGTTTTTTTGAAAAAACAAGGAGTGCTTTGTTCTCTTTCAGCAAACTCGTGCATTTCCAGTGCTTTCTTATCAAAACAAAA</canonical_amplicon>
		<polymorphic_amplicon>CAAGCTTCTTTAAAGTTCATAACAGTTTGAAATTAACCTCTCTAGATTAGTTTTGGAATAGAAACCTAAAAAAGTGTAAATTACTGAATTCCAATCTTTCGGCTAATTAGGGAATTTCATTTTCCACATTGCTGCAATTATCTATATTTTGTTATTTTTTTTTGAAAATTKTTTTTTTGAAAAAACAAGGAGTGCTTTGTTCTCTTTCAGCAAACTCGTGCATTTCCAGTGCTTTCTTATCAAAACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16528</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>68677</contig_pos>
        <strand>+</strand>
        <context>TGTTTGATCT[A/G]GAAGTACCGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATCTGCACTAATAGGAATTGCCCAGTGAACGTTTGTTTTTGTTTGATCT</left_flank>
        <right_flank>GAAGTACCGTCTCTTTTCTGAATAATGTCAGAAACCACAACGTTTGAAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTAGGGCAAAAATATTTATAAAAATTGCCTCCCGGAAAACTCAAAATAAAATATAAGGCAGGGAGCGTGATGTCTTAACAACCGAATGTCCTCGATTTGAACTTCTAGTCCTGCTAAGTTGTTTAAAAAAGTTTTTATGATCCAACGATTTAGGTCGTAAAATTCAGCGTATTAGCCTAAATTGACCATTCAAAAACAAGCTTCTTTAAAGTTCATAACAGTTTGAAATTAACCTCTCTAGATTAGTTTTGGAATAGAAACCTAAAAAAGTGTAAATTACTGAATTCCAATCTTTCGGCTAATTAGGGAATTTCATTTTCCACATTGCTGCAATTATCTATATTTTGTTATTTTTTTTTGAAAATTGTTTTTTTGAAAAAACAAGGAGTGCTTTGTTCTCTTTCAGCAAACTCGTGCATTTCCAGTGCTTTCTTATCAAAACAAAAATATCTGCACTAATAGGAATTGCCCAGTGAACGTTTGTTTTTGTTTGATCTAGAAGTACCGTCTCTTTTCTGAATAATGTCAGAAACCACAACGTTTGAAAGTCTATTTAATCGAAAAATTTTAAATATGTAGTCGAAAAATTGTTCTTATAATCTAATGCAGATTATGCAATACAATCAAACAAAGTGCTCTCTTCCTTTTTGAAATCCAAGTATCCCTTTTTCTCATTCCCTAATCCGTTGTTGGATTTGAGCCAAAGGATCACAGAAGCATCCGTCTTGTACTCCCTTTTCAGTGAGAACTCCACTAATAATATATTCCATGCATACTTTCTTTTGTCCTTTTCCTGGAACTCTCTGGTCACGTCTTTGAACTACCATAACATTAGTCTAACGCTTTTGCCCTTTACCGGAAACAAAGTGAAAAAAGAAACAGGAGAGATTCAACCAAAAATAGATGGGGTTCTCTGGTTTTAACATGTCTCAGAGGCTGGACACGTACTTTTTGGGGTTTCTAAAAAGGAAATTGAATAAACAGTAAAGTGCACAAGA</canonical>
            <polymorphic>TTGTAGGGCAAAAATATTTATAAAAATTGCCTCCCGGAAAACTCAAAATAAAATATAAGGCAGGGAGCGTGATGTCTTAACAACCGAATGTCCTCGATTTGAACTTCTAGTCCTGCTAAGTTGTTTAAAAAAGTTTTTATGATCCAACGATTTAGGTCGTAAAATTCAGCGTATTAGCCTAAATTGACCATTCAAAAACAAGCTTCTTTAAAGTTCATAACAGTTTGAAATTAACCTCTCTAGATTAGTTTTGGAATAGAAACCTAAAAAAGTGTAAATTACTGAATTCCAATCTTTCGGCTAATTAGGGAATTTCATTTTCCACATTGCTGCAATTATCTATATTTTGTTATTTTTTTTTGAAAATTGTTTTTTTGAAAAAACAAGGAGTGCTTTGTTCTCTTTCAGCAAACTCGTGCATTTCCAGTGCTTTCTTATCAAAACAAAAATATCTGCACTAATAGGAATTGCCCAGTGAACGTTTGTTTTTGTTTGATCTRGAAGTACCGTCTCTTTTCTGAATAATGTCAGAAACCACAACGTTTGAAAGTCTATTTAATCGAAAAATTTTAAATATGTAGTCGAAAAATTGTTCTTATAATCTAATGCAGATTATGCAATACAATCAAACAAAGTGCTCTCTTCCTTTTTGAAATCCAAGTATCCCTTTTTCTCATTCCCTAATCCGTTGTTGGATTTGAGCCAAAGGATCACAGAAGCATCCGTCTTGTACTCCCTTTTCAGTGAGAACTCCACTAATAATATATTCCATGCATACTTTCTTTTGTCCTTTTCCTGGAACTCTCTGGTCACGTCTTTGAACTACCATAACATTAGTCTAACGCTTTTGCCCTTTACCGGAAACAAAGTGAAAAAAGAAACAGGAGAGATTCAACCAAAAATAGATGGGGTTCTCTGGTTTTAACATGTCTCAGAGGCTGGACACGTACTTTTTGGGGTTTCTAAAAAGGAAATTGAATAAACAGTAAAGTGCACAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 258 133 107</canonical_bands>
                <polymorphic_bands>760 133 107</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>503 258 239</canonical_bands>
                <polymorphic_bands>761 239</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTGTTCTCTTTCAGCAAACT</pcr_primer_p1>
		<pcr_primer_p2>GAGAGCACTTTGTTTGATTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTGTTCTCTTTCAGCAAACTCGTGCATTTCCAGTGCTTTCTTATCAAAACAAAAATATCTGCACTAATAGGAATTGCCCAGTGAACGTTTGTTTTTGTTTGATCTAGAAGTACCGTCTCTTTTCTGAATAATGTCAGAAACCACAACGTTTGAAAGTCTATTTAATCGAAAAATTTTAAATATGTAGTCGAAAAATTGTTCTTATAATCTAATGCAGATTATGCAATACAATCAAACAAAGTGCTCTC</canonical_amplicon>
		<polymorphic_amplicon>CTTTGTTCTCTTTCAGCAAACTCGTGCATTTCCAGTGCTTTCTTATCAAAACAAAAATATCTGCACTAATAGGAATTGCCCAGTGAACGTTTGTTTTTGTTTGATCTRGAAGTACCGTCTCTTTTCTGAATAATGTCAGAAACCACAACGTTTGAAAGTCTATTTAATCGAAAAATTTTAAATATGTAGTCGAAAAATTGTTCTTATAATCTAATGCAGATTATGCAATACAATCAAACAAAGTGCTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16529</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>71522</contig_pos>
        <strand>+</strand>
        <context>AGGATATAAT[A/G]ATCTCAGCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGAAGTCTGCTTCCCATCTTCTTCAACGTTTGACTCTTCAGGATATAAT</left_flank>
        <right_flank>ATCTCAGCTTTTTGGGACCCATCTCAACACTTCAAGGGGAAGACCATCAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGGGGACAAGTCGCAGGACAATCGCAGTACTATCAGTCGGAAAGTGGTGCCACCGGACTATCTAATCCCATGTTTTACGGGTCTATGGGAGGATGGTATCAACCACCGCCAAACTTAAACTTTGATGGAGTCACTGAAGACGTTGGACCAACACCAGCGCCACCAGTAGCACCACCACTCCAACACCACCACATCACCATGATGCCTCCTCCCGGTTTGGCACCACCGCCACAGCCGAGAGTTTCGATTTCGGACGAGGAACTGTACCAGGCGTTAAATATGTCACCGCTTCCGTTGATTTCTACTGGATATCATGCTCAGCATCAGCAGCAAAAACAGCCACATAGCCAGGCAATGTTGTCACAGCTTCAATCACATCCACAGCTAGGTGAGGGTTCAAAGAAATGGATTATGTAGCGAACTCAGTGTTTTCAGACTATCTTTCGTCCGAAGTCTGCTTCCCATCTTCTTCAACGTTTGACTCTTCAGGATATAATAATCTCAGCTTTTTGGGACCCATCTCAACACTTCAAGGGGAAGACCATCATAATTACCAACATGGCAACGATGGTGATGACGAAGAATCGTTTGGAGATCCTGATAGATTTGAAACAATGTCTCCAACGTTTTCATTTCATTCTTGTGCTCAAACAGCATCCACCAATAACGCTGAGGATTTGGAGGTAATTTTTTTGTTAGATCTTTGTAGTTACTCCGTTATTCTGGGTGTATCAATCAGACAGCTGTAATGTCAGCTTTTCTAGTGACGTCAAAAATCTTGGCACGGCGCCAAAAGTTTGTTTAGTTAGCAGCCGTTTTTTCCCTATTTCTCTCGTTCACAATCTAATATTTTGTTGTTGTCATTTGAAAAGAGGAGAAGAGGAAAAGCACAGGGGGTACACACCGAAAATGTTTTTTTCTAGACCCAGACTCCTAGTTCGTTTTCCTCCTCGTGGTTTCGCAGTTTAGTTATTCTCTACATTGTACCACTACTGTCC</canonical>
            <polymorphic>CCTGGGGACAAGTCGCAGGACAATCGCAGTACTATCAGTCGGAAAGTGGTGCCACCGGACTATCTAATCCCATGTTTTACGGGTCTATGGGAGGATGGTATCAACCACCGCCAAACTTAAACTTTGATGGAGTCACTGAAGACGTTGGACCAACACCAGCGCCACCAGTAGCACCACCACTCCAACACCACCACATCACCATGATGCCTCCTCCCGGTTTGGCACCACCGCCACAGCCGAGAGTTTCGATTTCGGACGAGGAACTGTACCAGGCGTTAAATATGTCACCGCTTCCGTTGATTTCTACTGGATATCATGCTCAGCATCAGCAGCAAAAACAGCCACATAGCCAGGCAATGTTGTCACAGCTTCAATCACATCCACAGCTAGGTGAGGGTTCAAAGAAATGGATTATGTAGCGAACTCAGTGTTTTCAGACTATCTTTCGTCCGAAGTCTGCTTCCCATCTTCTTCAACGTTTGACTCTTCAGGATATAATRATCTCAGCTTTTTGGGACCCATCTCAACACTTCAAGGGGAAGACCATCATAATTACCAACATGGCAACGATGGTGATGACGAAGAATCGTTTGGAGATCCTGATAGATTTGAAACAATGTCTCCAACGTTTTCATTTCATTCTTGTGCTCAAACAGCATCCACCAATAACGCTGAGGATTTGGAGGTAATTTTTTTGTTAGATCTTTGTAGTTACTCCGTTATTCTGGGTGTATCAATCAGACAGCTGTAATGTCAGCTTTTCTAGTGACGTCAAAAATCTTGGCACGGCGCCAAAAGTTTGTTTAGTTAGCAGCCGTTTTTTCCCTATTTCTCTCGTTCACAATCTAATATTTTGTTGTTGTCATTTGAAAAGAGGAGAAGAGGAAAAGCACAGGGGGTACACACCGAAAATGTTTTTTTCTAGACCCAGACTCCTAGTTCGTTTTCCTCCTCGTGGTTTCGCAGTTTAGTTATTCTCTACATTGTACCACTACTGTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAAAGAAATGGATTATGTAGC</pcr_primer_p1>
		<pcr_primer_p2>AGCACAAGAATGAAATGAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTCAAAGAAATGGATTATGTAGCGAACTCAGTGTTTTCAGACTATCTTTCGTCCGAAGTCTGCTTCCCATCTTCTTCAACGTTTGACTCTTCAGGATATAATAATCTCAGCTTTTTGGGACCCATCTCAACACTTCAAGGGGAAGACCATCATAATTACCAACATGGCAACGATGGTGATGACGAAGAATCGTTTGGAGATCCTGATAGATTTGAAACAATGTCTCCAACGTTTTCATTTCATTCTTGTGCT</canonical_amplicon>
		<polymorphic_amplicon>TTCAAAGAAATGGATTATGTAGCGAACTCAGTGTTTTCAGACTATCTTTCGTCCGAAGTCTGCTTCCCATCTTCTTCAACGTTTGACTCTTCAGGATATAATRATCTCAGCTTTTTGGGACCCATCTCAACACTTCAAGGGGAAGACCATCATAATTACCAACATGGCAACGATGGTGATGACGAAGAATCGTTTGGAGATCCTGATAGATTTGAAACAATGTCTCCAACGTTTTCATTTCATTCTTGTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16530</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>139496</contig_pos>
        <strand>+</strand>
        <context>TCATAAAACA[C/G]TTTGTTCATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTTTTCCGACTTTACTTTTTCCTGACGTACCTTTCAACAATCATAAAACA</left_flank>
        <right_flank>TTTGTTCATGCAAAATAGCAAACTTTTTTCTCCCCGCATTCTTTACCCCC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTTACTATTCATTTTTAATAAATATCCGGCGGCATACTGTAACATGTGATTAGTTATACGATAATTGTTATTATTTTCGACATTTCTTCTCACATCAGTTATTTTTCTTCTAGATTCTCCTTCTTGAGACCGAGCCCGCCTCCCAACAGGCAAAATGAGCAAGAAATGAGCCACTTGAAAATCGTGTCGAGAGGTTTGTTTCGGTCCCTCGGATCTTGATTTGGCGCTTTTCCTTTGCCGTCTCTCATTTCAATTTCATCAAAGTGGTGGTGGCGTTAAATTTTTTCTGTGGTAGATTTTACGAGTGGTAGGGTATTACGGTACACCTCATCACATTCTCTTCGGGTTTCCTTCTATTTGTCATCTATCTCCCCCGAATTCTAATCAAGTATACAGTAGATTTACGACATTTGTCATAGAAGGGAGCCATCCATCCGCTTGATTGGAGTTTTCCGACTTTACTTTTTCCTGACGTACCTTTCAACAATCATAAAACACTTTGTTCATGCAAAATAGCAAACTTTTTTCTCCCCGCATTCTTTACCCCCCCCCCCCCCTGTCCTTTTTAAGTTTGTTTCTTTTTCCCCCACTAAAAACTAGTCAACCAATTTTTTACTCCTCTTTTTGCTCTCCCGTCTTTACTTCCATTTTTTGAATAGCCAAAAACGGAAAAGCACGGAAGCCTGGCTGATTTCTTTAAATATTGGGTACGGACATTTTACCTTTTCTTTTTCCTTTTCGCACCGCAATTTTTTGGCGGCCCGACCCGCCTCTTCGCATCATCATCAAAATGAAATGCAAATTTGCCTCGAGACTACTACAACCAGCCCGTTTTCTATTTGAGGCCGGGACGTCCGTCCTTCAAAATTTCTTGACGGTTACTTGATTTGTGAATGTTTTGATATCCCTATATTTTCTAGTACAGTGAAGTTTTTAAAAAACGTTTTTCAACAAATACAATATTGAAATTTCCATTTCACTGTTCAGGCCTTTTTTGA</canonical>
            <polymorphic>CGTTTACTATTCATTTTTAATAAATATCCGGCGGCATACTGTAACATGTGATTAGTTATACGATAATTGTTATTATTTTCGACATTTCTTCTCACATCAGTTATTTTTCTTCTAGATTCTCCTTCTTGAGACCGAGCCCGCCTCCCAACAGGCAAAATGAGCAAGAAATGAGCCACTTGAAAATCGTGTCGAGAGGTTTGTTTCGGTCCCTCGGATCTTGATTTGGCGCTTTTCCTTTGCCGTCTCTCATTTCAATTTCATCAAAGTGGTGGTGGCGTTAAATTTTTTCTGTGGTAGATTTTACGAGTGGTAGGGTATTACGGTACACCTCATCACATTCTCTTCGGGTTTCCTTCTATTTGTCATCTATCTCCCCCGAATTCTAATCAAGTATACAGTAGATTTACGACATTTGTCATAGAAGGGAGCCATCCATCCGCTTGATTGGAGTTTTCCGACTTTACTTTTTCCTGACGTACCTTTCAACAATCATAAAACASTTTGTTCATGCAAAATAGCAAACTTTTTTCTCCCCGCATTCTTTACCCCCCCCCCCCCCTGTCCTTTTTAAGTTTGTTTCTTTTTCCCCCACTAAAAACTAGTCAACCAATTTTTTACTCCTCTTTTTGCTCTCCCGTCTTTACTTCCATTTTTTGAATAGCCAAAAACGGAAAAGCACGGAAGCCTGGCTGATTTCTTTAAATATTGGGTACGGACATTTTACCTTTTCTTTTTCCTTTTCGCACCGCAATTTTTTGGCGGCCCGACCCGCCTCTTCGCATCATCATCAAAATGAAATGCAAATTTGCCTCGAGACTACTACAACCAGCCCGTTTTCTATTTGAGGCCGGGACGTCCGTCCTTCAAAATTTCTTGACGGTTACTTGATTTGTGAATGTTTTGATATCCCTATATTTTCTAGTACAGTGAAGTTTTTAAAAAACGTTTTTCAACAAATACAATATTGAAATTTCCATTTCACTGTTCAGGCCTTTTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>164 149 92 87 81 80 67 52 50 44 35 19 19 18 16 13 8 3 3</canonical_bands>
                <polymorphic_bands>256 149 87 81 80 67 52 50 44 35 19 19 18 16 13 8 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTCCTTCTATTTGTCATCTA</pcr_primer_p1>
		<pcr_primer_p2>GGGAAAAAGAAACAAACTTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GGTTTCCTTCTATTTGTCATCTATCTCCCCCGAATTCTAATCAAGTATACAGTAGATTTACGACATTTGTCATAGAAGGGAGCCATCCATCCGCTTGATTGGAGTTTTCCGACTTTACTTTTTCCTGACGTACCTTTCAACAATCATAAAACACTTTGTTCATGCAAAATAGCAAACTTTTTTCTCCCCGCATTCTTTACCCCCCCCCCCCCCTGTCCTTTTTAAGTTTGTTTCTTTTTCCC</canonical_amplicon>
		<polymorphic_amplicon>GGTTTCCTTCTATTTGTCATCTATCTCCCCCGAATTCTAATCAAGTATACAGTAGATTTACGACATTTGTCATAGAAGGGAGCCATCCATCCGCTTGATTGGAGTTTTCCGACTTTACTTTTTCCTGACGTACCTTTCAACAATCATAAAACASTTTGTTCATGCAAAATAGCAAACTTTTTTCTCCCCGCATTCTTTACCCCCCCCCCCCCCTGTCCTTTTTAAGTTTGTTTCTTTTTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16531</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>140952</contig_pos>
        <strand>+</strand>
        <context>TCTATCTTCG[A/G]TGCTCCTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTTAGAACTCACATTTTTTCGCTCCCCCCTTTTTCGTTTTCTATCTTCG</left_flank>
        <right_flank>TGCTCCTTCAAAAGGTTGAGGTCACTCTTGCTTATTCATAAATACTTGAA</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACAAACGTTTTCCACATCCAATCTTTTGTACTTTCGTTTCGAAAATTCGATTCTCTTCCATTTTTTAACACATTTAACATTCAGGAGAAGTTCGACAATTTCTAGAAAAACACGAAAAAAGACAAAAGAAAAGGGTGTCACTTGCACGCGTGCTTTTCCTTCTTCTCCTCCTTCCAAAAAAAGCTCCGAGGAGGTCTCTAACCGAGACATTGACATTGAGTTTGTTTGGTTTACTCTGACTTGTTGCATAGGAGAAGAAAAAAAAAAGTATCCCTTGTTTAGTGACCACGGCTGACCGAGGTGTTGGAAAAAAGGAGGAGAAGGGCGAGGAAGAAGTGAAAGATTGAATGAAATAGGGTAGGCAAAAAACAGGAGGGAAAAATGCGAAGAACGAGAGTTGCGAATTGAAGCCGAAGCGGTGTCAGCAAAAAGAGTAAAAATAAATGCTCCTTAGAACTCACATTTTTTCGCTCCCCCCTTTTTCGTTTTCTATCTTCGGTGCTCCTTCAAAAGGTTGAGGTCACTCTTGCTTATTCATAAATACTTGAAGCTTTTGTTGAATCTTTTTTTGCTTGTCGCTCCCCTCATCGTTTTTAGTCGCCTCCTAAAAAAACGACCGAAAAAATGAAGAACCGGCATGGATATATACATAGTTGGTATTTTTCCGTGATACTTGTCATTTTTTCATTTCTCCCGTGGGATCAATGTGTTGCCGGGCCCCTATCTCCGGCTGTTGGCCGTCTTTTCACACTTGTTTGTTTTGTTTTGTCTTCGCCCCTCCTACTCGATGACTTTAGAACTTTCCAGACCAGACGATGCTTTTCCATTTCTACATTTTTTTTTCGCCTTCTCAACCCCTTCTTCATCCCATGACAGCAAAAAGTAACCCGGGTTTTGATAGTGGGAAGGATTAGTTGAGAGTCATGTCCCAAAGGCAAGTGTCGTCACCATAGTCCTTGTTATTTTTTTTGGGAATCCAGTTTTTTGTTTCACAGTAAC</canonical>
            <polymorphic>CACAAACGTTTTCCACATCCAATCTTTTGTACTTTCGTTTCGAAAATTCGATTCTCTTCCATTTTTTAACACATTTAACATTCAGGAGAAGTTCGACAATTTCTAGAAAAACACGAAAAAAGACAAAAGAAAAGGGTGTCACTTGCACGCGTGCTTTTCCTTCTTCTCCTCCTTCCAAAAAAAGCTCCGAGGAGGTCTCTAACCGAGACATTGACATTGAGTTTGTTTGGTTTACTCTGACTTGTTGCATAGGAGAAGAAAAAAAAAAGTATCCCTTGTTTAGTGACCACGGCTGACCGAGGTGTTGGAAAAAAGGAGGAGAAGGGCGAGGAAGAAGTGAAAGATTGAATGAAATAGGGTAGGCAAAAAACAGGAGGGAAAAATGCGAAGAACGAGAGTTGCGAATTGAAGCCGAAGCGGTGTCAGCAAAAAGAGTAAAAATAAATGCTCCTTAGAACTCACATTTTTTCGCTCCCCCCTTTTTCGTTTTCTATCTTCGRTGCTCCTTCAAAAGGTTGAGGTCACTCTTGCTTATTCATAAATACTTGAAGCTTTTGTTGAATCTTTTTTTGCTTGTCGCTCCCCTCATCGTTTTTAGTCGCCTCCTAAAAAAACGACCGAAAAAATGAAGAACCGGCATGGATATATACATAGTTGGTATTTTTCCGTGATACTTGTCATTTTTTCATTTCTCCCGTGGGATCAATGTGTTGCCGGGCCCCTATCTCCGGCTGTTGGCCGTCTTTTCACACTTGTTTGTTTTGTTTTGTCTTCGCCCCTCCTACTCGATGACTTTAGAACTTTCCAGACCAGACGATGCTTTTCCATTTCTACATTTTTTTTTCGCCTTCTCAACCCCTTCTTCATCCCATGACAGCAAAAAGTAACCCGGGTTTTGATAGTGGGAAGGATTAGTTGAGAGTCATGTCCCAAAGGCAAGTGTCGTCACCATAGTCCTTGTTATTTTTTTTGGGAATCCAGTTTTTTGTTTCACAGTAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>504 280 216</canonical_bands>
                <polymorphic_bands>720 280</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>153 146 132 83 56 45 42 41 39 39 38 35 29 25 22 15 13 11 7 6 6 6 4 3 2 2</canonical_bands>
                <polymorphic_bands>153 146 132 83 63 56 45 42 39 39 38 35 29 25 15 13 11 7 6 6 6 4 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGTCAGCAAAAAGAGTAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CACGGAAAAATACCAACTATGTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTGTCAGCAAAAAGAGTAAAAATAAATGCTCCTTAGAACTCACATTTTTTCGCTCCCCCCTTTTTCGTTTTCTATCTTCGGTGCTCCTTCAAAAGGTTGAGGTCACTCTTGCTTATTCATAAATACTTGAAGCTTTTGTTGAATCTTTTTTTGCTTGTCGCTCCCCTCATCGTTTTTAGTCGCCTCCTAAAAAAACGACCGAAAAAATGAAGAACCGGCATGGATATATACATAGTTGGTATTTTTCCGTG</canonical_amplicon>
		<polymorphic_amplicon>GTGTCAGCAAAAAGAGTAAAAATAAATGCTCCTTAGAACTCACATTTTTTCGCTCCCCCCTTTTTCGTTTTCTATCTTCGRTGCTCCTTCAAAAGGTTGAGGTCACTCTTGCTTATTCATAAATACTTGAAGCTTTTGTTGAATCTTTTTTTGCTTGTCGCTCCCCTCATCGTTTTTAGTCGCCTCCTAAAAAAACGACCGAAAAAATGAAGAACCGGCATGGATATATACATAGTTGGTATTTTTCCGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16532</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>146918</contig_pos>
        <strand>+</strand>
        <context>GAACCTAGGT[C/T]TTTKTCTTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATACACTATTTCAAACGTCCAGTGGTTAAGACTCGGTTAAGAACCTAGGT</left_flank>
        <right_flank>TTTGTCTTGTGCTGCTCCGTTTTCACTTCGTTTTGTTTCATTTATAATGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTTTCATAAACTCGATTACGGTAGAGAAGGACTCAACTCGTCACAAGTAATATGAAGTGAAGAAGTTCATTCGATCAGACATTCAAAAAAACAAGTATCGCCTCTTTTTTCTGGCCAAGAAGTTATCTTCTTGATATTCTCCGTGAGTGTCTATCAAAATGAACCACTTCACTTCTGTGCCCCTCCAATAAAGAAAAAAACACACGAAGAATGTGCCAAAAGTTTTTTCTTTCCTCTGAGGAGGGGTGTTGCACTCTCTTTTTTGACTGTGTGTCTTCCTACTATCTTTCCTTCCTGCTCGCTTTTCGGTAGATGTCATCAATAATTCTGTCCAAACATGCTTTAAACTCATTGTTCTTCTTCTCCTTATCCCCTCGTCGCTCGGTGCCGCCAAAAAAGCGTCACGTTCCACTTTTTTCAAACCGAATGGCTTCAGTTTTTGGCATCATACACTATTTCAAACGTCCAGTGGTTAAGACTCGGTTAAGAACCTAGGTCTTTGTCTTGTGCTGCTCCGTTTTCACTTCGTTTTGTTTCATTTATAATGCGGACATATTACATCTCCCTCTTTTGCCCTTTTATAGCCTGCACTCTCTTCTGTTCAACATCACTTTTCCCCAGAGCAAATGATACTTTCTAGGAAATGAGAAATAAATTTAGATTCTGTCTCGTCGATGAACTTAAACTCAATATTTCAGGGTATCTGACCCCACAAGACAGCGACACGGACAGCGGAATAAGTGCCGATTGTGATCAAGGGTCGCCGAGGGCAGGATCAGTGTTTGGAACGCCGGTCAACGGAGTGGTCAACGGACAACAAGTCACTACACAACGCAGAATTCCTGGTAAAACGTTTAATTGAAAACTACTCAAACGTTATTGATCTTTTTAAGACCTCCCACAGCCATCCTATCAAAACTTTCGGAGTCAATCTTCGGCTGACTATTTGACTCCAAATTCGGCTCGTAAAATTGCTGGATACGGTACTACGCCACGTC</canonical>
            <polymorphic>GGTTTTCATAAACTCGATTACGGTAGAGAAGGACTCAACTCGTCACAAGTAATATGAAGTGAAGAAGTTCATTCGATCAGACATTCAAAAAAACAAGTATCGCCTCTTTTTTCTGGCCAAGAAGTTATCTTCTTGATATTCTCCGTGAGTGTCTATCAAAATGAACCACTTCACTTCTGTGCCCCTCCAATAAAGAAAAAAACACACGAAGAATGTGCCAAAAGTTTTTTCTTTCCTCTGAGGAGGGGTGTTGCACTCTCTTTTTTGACTGTGTGTCTTCCTACTATCTTTCCTTCCTGCTCGCTTTTCGGTAGATGTCATCAATAATTCTGTCCAAACATGCTTTAAACTCATTGTTCTTCTTCTCCTTATCCCCTCGTCGCTCGGTGCCGCCAAAAAAGCGTCACGTTCCACTTTTTTCAAACCGAATGGCTTCAGTTTTTGGCATCATACACTATTTCAAACGTCCAGTGGTTAAGACTCGGTTAAGAACCTAGGTYTTTGTCTTGTGCTGCTCCGTTTTCACTTCGTTTTGTTTCATTTATAATGCGGACATATTACATCTCCCTCTTTTGCCCTTTTATAGCCTGCACTCTCTTCTGTTCAACATCACTTTTCCCCAGAGCAAATGATACTTTCTAGGAAATGAGAAATAAATTTAGATTCTGTCTCGTCGATGAACTTAAACTCAATATTTCAGGGTATCTGACCCCACAAGACAGCGACACGGACAGCGGAATAAGTGCCGATTGTGATCAAGGGTCGCCGAGGGCAGGATCAGTGTTTGGAACGCCGGTCAACGGAGTGGTCAACGGACAACAAGTCACTACACAACGCAGAATTCCTGGTAAAACGTTTAATTGAAAACTACTCAAACGTTATTGATCTTTTTAAGACCTCCCACAGCCATCCTATCAAAACTTTCGGAGTCAATCTTCGGCTGACTATTTGACTCCAAATTCGGCTCGTAAAATTGCTGGATACGGTACTACGCCACGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCATCAATAATTCTGTCCAAAC</pcr_primer_p1>
		<pcr_primer_p2>GAGATGTAATATGTCCGCATTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCATCAATAATTCTGTCCAAACATGCTTTAAACTCATTGTTCTTCTTCTCCTTATCCCCTCGTCGCTCGGTGCCGCCAAAAAAGCGTCACGTTCCACTTTTTTCAAACCGAATGGCTTCAGTTTTTGGCATCATACACTATTTCAAACGTCCAGTGGTTAAGACTCGGTTAAGAACCTAGGTCTTTGTCTTGTGCTGCTCCGTTTTCACTTCGTTTTGTTTCATTTATAATGCGGACATATTACATCTC</canonical_amplicon>
		<polymorphic_amplicon>GTCATCAATAATTCTGTCCAAACATGCTTTAAACTCATTGTTCTTCTTCTCCTTATCCCCTCGTCGCTCGGTGCCGCCAAAAAAGCGTCACGTTCCACTTTTTTCAAACCGAATGGCTTCAGTTTTTGGCATCATACACTATTTCAAACGTCCAGTGGTTAAGACTCGGTTAAGAACCTAGGTYTTTGTCTTGTGCTGCTCCGTTTTCACTTCGTTTTGTTTCATTTATAATGCGGACATATTACATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16533</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>146922</contig_pos>
        <strand>+</strand>
        <context>CTAGGTYTTT[G/T]TCTTGTGCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTATTTCAAACGTCCAGTGGTTAAGACTCGGTTAAGAACCTAGGTCTTT</left_flank>
        <right_flank>TCTTGTGCTGCTCCGTTTTCACTTCGTTTTGTTTCATTTATAATGCGGAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCATAAACTCGATTACGGTAGAGAAGGACTCAACTCGTCACAAGTAATATGAAGTGAAGAAGTTCATTCGATCAGACATTCAAAAAAACAAGTATCGCCTCTTTTTTCTGGCCAAGAAGTTATCTTCTTGATATTCTCCGTGAGTGTCTATCAAAATGAACCACTTCACTTCTGTGCCCCTCCAATAAAGAAAAAAACACACGAAGAATGTGCCAAAAGTTTTTTCTTTCCTCTGAGGAGGGGTGTTGCACTCTCTTTTTTGACTGTGTGTCTTCCTACTATCTTTCCTTCCTGCTCGCTTTTCGGTAGATGTCATCAATAATTCTGTCCAAACATGCTTTAAACTCATTGTTCTTCTTCTCCTTATCCCCTCGTCGCTCGGTGCCGCCAAAAAAGCGTCACGTTCCACTTTTTTCAAACCGAATGGCTTCAGTTTTTGGCATCATACACTATTTCAAACGTCCAGTGGTTAAGACTCGGTTAAGAACCTAGGTCTTTGTCTTGTGCTGCTCCGTTTTCACTTCGTTTTGTTTCATTTATAATGCGGACATATTACATCTCCCTCTTTTGCCCTTTTATAGCCTGCACTCTCTTCTGTTCAACATCACTTTTCCCCAGAGCAAATGATACTTTCTAGGAAATGAGAAATAAATTTAGATTCTGTCTCGTCGATGAACTTAAACTCAATATTTCAGGGTATCTGACCCCACAAGACAGCGACACGGACAGCGGAATAAGTGCCGATTGTGATCAAGGGTCGCCGAGGGCAGGATCAGTGTTTGGAACGCCGGTCAACGGAGTGGTCAACGGACAACAAGTCACTACACAACGCAGAATTCCTGGTAAAACGTTTAATTGAAAACTACTCAAACGTTATTGATCTTTTTAAGACCTCCCACAGCCATCCTATCAAAACTTTCGGAGTCAATCTTCGGCTGACTATTTGACTCCAAATTCGGCTCGTAAAATTGCTGGATACGGTACTACGCCACGTCGCTT</canonical>
            <polymorphic>TTCATAAACTCGATTACGGTAGAGAAGGACTCAACTCGTCACAAGTAATATGAAGTGAAGAAGTTCATTCGATCAGACATTCAAAAAAACAAGTATCGCCTCTTTTTTCTGGCCAAGAAGTTATCTTCTTGATATTCTCCGTGAGTGTCTATCAAAATGAACCACTTCACTTCTGTGCCCCTCCAATAAAGAAAAAAACACACGAAGAATGTGCCAAAAGTTTTTTCTTTCCTCTGAGGAGGGGTGTTGCACTCTCTTTTTTGACTGTGTGTCTTCCTACTATCTTTCCTTCCTGCTCGCTTTTCGGTAGATGTCATCAATAATTCTGTCCAAACATGCTTTAAACTCATTGTTCTTCTTCTCCTTATCCCCTCGTCGCTCGGTGCCGCCAAAAAAGCGTCACGTTCCACTTTTTTCAAACCGAATGGCTTCAGTTTTTGGCATCATACACTATTTCAAACGTCCAGTGGTTAAGACTCGGTTAAGAACCTAGGTCTTTKTCTTGTGCTGCTCCGTTTTCACTTCGTTTTGTTTCATTTATAATGCGGACATATTACATCTCCCTCTTTTGCCCTTTTATAGCCTGCACTCTCTTCTGTTCAACATCACTTTTCCCCAGAGCAAATGATACTTTCTAGGAAATGAGAAATAAATTTAGATTCTGTCTCGTCGATGAACTTAAACTCAATATTTCAGGGTATCTGACCCCACAAGACAGCGACACGGACAGCGGAATAAGTGCCGATTGTGATCAAGGGTCGCCGAGGGCAGGATCAGTGTTTGGAACGCCGGTCAACGGAGTGGTCAACGGACAACAAGTCACTACACAACGCAGAATTCCTGGTAAAACGTTTAATTGAAAACTACTCAAACGTTATTGATCTTTTTAAGACCTCCCACAGCCATCCTATCAAAACTTTCGGAGTCAATCTTCGGCTGACTATTTGACTCCAAATTCGGCTCGTAAAATTGCTGGATACGGTACTACGCCACGTCGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCATCAATAATTCTGTCCAAAC</pcr_primer_p1>
		<pcr_primer_p2>GAGATGTAATATGTCCGCATTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCATCAATAATTCTGTCCAAACATGCTTTAAACTCATTGTTCTTCTTCTCCTTATCCCCTCGTCGCTCGGTGCCGCCAAAAAAGCGTCACGTTCCACTTTTTTCAAACCGAATGGCTTCAGTTTTTGGCATCATACACTATTTCAAACGTCCAGTGGTTAAGACTCGGTTAAGAACCTAGGTCTTTGTCTTGTGCTGCTCCGTTTTCACTTCGTTTTGTTTCATTTATAATGCGGACATATTACATCTC</canonical_amplicon>
		<polymorphic_amplicon>GTCATCAATAATTCTGTCCAAACATGCTTTAAACTCATTGTTCTTCTTCTCCTTATCCCCTCGTCGCTCGGTGCCGCCAAAAAAGCGTCACGTTCCACTTTTTTCAAACCGAATGGCTTCAGTTTTTGGCATCATACACTATTTCAAACGTCCAGTGGTTAAGACTCGGTTAAGAACCTAGGTCTTTKTCTTGTGCTGCTCCGTTTTCACTTCGTTTTGTTTCATTTATAATGCGGACATATTACATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16534</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>146944</contig_pos>
        <strand>+</strand>
        <context>TCCGTTTTCA[C/T]TTCGTTTTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAGACTCGGTTAAGAACCTAGGTCTTTGTCTTGTGCTGCTCCGTTTTCA</left_flank>
        <right_flank>TTCGTTTTGTTTCATTTATAATGCGGACATATTACATCTCCCTCTTTTGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAGGACTCAACTCGTCACAAGTAATATGAAGTGAAGAAGTTCATTCGATCAGACATTCAAAAAAACAAGTATCGCCTCTTTTTTCTGGCCAAGAAGTTATCTTCTTGATATTCTCCGTGAGTGTCTATCAAAATGAACCACTTCACTTCTGTGCCCCTCCAATAAAGAAAAAAACACACGAAGAATGTGCCAAAAGTTTTTTCTTTCCTCTGAGGAGGGGTGTTGCACTCTCTTTTTTGACTGTGTGTCTTCCTACTATCTTTCCTTCCTGCTCGCTTTTCGGTAGATGTCATCAATAATTCTGTCCAAACATGCTTTAAACTCATTGTTCTTCTTCTCCTTATCCCCTCGTCGCTCGGTGCCGCCAAAAAAGCGTCACGTTCCACTTTTTTCAAACCGAATGGCTTCAGTTTTTGGCATCATACACTATTTCAAACGTCCAGTGGTTAAGACTCGGTTAAGAACCTAGGTCTTTGTCTTGTGCTGCTCCGTTTTCACTTCGTTTTGTTTCATTTATAATGCGGACATATTACATCTCCCTCTTTTGCCCTTTTATAGCCTGCACTCTCTTCTGTTCAACATCACTTTTCCCCAGAGCAAATGATACTTTCTAGGAAATGAGAAATAAATTTAGATTCTGTCTCGTCGATGAACTTAAACTCAATATTTCAGGGTATCTGACCCCACAAGACAGCGACACGGACAGCGGAATAAGTGCCGATTGTGATCAAGGGTCGCCGAGGGCAGGATCAGTGTTTGGAACGCCGGTCAACGGAGTGGTCAACGGACAACAAGTCACTACACAACGCAGAATTCCTGGTAAAACGTTTAATTGAAAACTACTCAAACGTTATTGATCTTTTTAAGACCTCCCACAGCCATCCTATCAAAACTTTCGGAGTCAATCTTCGGCTGACTATTTGACTCCAAATTCGGCTCGTAAAATTGCTGGATACGGTACTACGCCACGTCGCTTGCCGCTGCAGCCACAACAGCAA</canonical>
            <polymorphic>AGAAGGACTCAACTCGTCACAAGTAATATGAAGTGAAGAAGTTCATTCGATCAGACATTCAAAAAAACAAGTATCGCCTCTTTTTTCTGGCCAAGAAGTTATCTTCTTGATATTCTCCGTGAGTGTCTATCAAAATGAACCACTTCACTTCTGTGCCCCTCCAATAAAGAAAAAAACACACGAAGAATGTGCCAAAAGTTTTTTCTTTCCTCTGAGGAGGGGTGTTGCACTCTCTTTTTTGACTGTGTGTCTTCCTACTATCTTTCCTTCCTGCTCGCTTTTCGGTAGATGTCATCAATAATTCTGTCCAAACATGCTTTAAACTCATTGTTCTTCTTCTCCTTATCCCCTCGTCGCTCGGTGCCGCCAAAAAAGCGTCACGTTCCACTTTTTTCAAACCGAATGGCTTCAGTTTTTGGCATCATACACTATTTCAAACGTCCAGTGGTTAAGACTCGGTTAAGAACCTAGGTCTTTGTCTTGTGCTGCTCCGTTTTCAYTTCGTTTTGTTTCATTTATAATGCGGACATATTACATCTCCCTCTTTTGCCCTTTTATAGCCTGCACTCTCTTCTGTTCAACATCACTTTTCCCCAGAGCAAATGATACTTTCTAGGAAATGAGAAATAAATTTAGATTCTGTCTCGTCGATGAACTTAAACTCAATATTTCAGGGTATCTGACCCCACAAGACAGCGACACGGACAGCGGAATAAGTGCCGATTGTGATCAAGGGTCGCCGAGGGCAGGATCAGTGTTTGGAACGCCGGTCAACGGAGTGGTCAACGGACAACAAGTCACTACACAACGCAGAATTCCTGGTAAAACGTTTAATTGAAAACTACTCAAACGTTATTGATCTTTTTAAGACCTCCCACAGCCATCCTATCAAAACTTTCGGAGTCAATCTTCGGCTGACTATTTGACTCCAAATTCGGCTCGTAAAATTGCTGGATACGGTACTACGCCACGTCGCTTGCCGCTGCAGCCACAACAGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>114 102 93 86 72 67 41 38 33 29 24 23 21 20 19 19 19 18 18 17 17 16 14 13 11 9 9 8 7 5 5 5 4 2 2</canonical_bands>
                <polymorphic_bands>114 102 93 86 81 72 41 38 33 29 24 23 21 20 19 19 19 18 18 17 17 16 13 11 9 9 8 7 5 5 5 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTGTTCTTCTTCTCCTTATCC</pcr_primer_p1>
		<pcr_primer_p2>AGAAGAGAGTGCAGGCTATAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTGTTCTTCTTCTCCTTATCCCCTCGTCGCTCGGTGCCGCCAAAAAAGCGTCACGTTCCACTTTTTTCAAACCGAATGGCTTCAGTTTTTGGCATCATACACTATTTCAAACGTCCAGTGGTTAAGACTCGGTTAAGAACCTAGGTCTTTGTCTTGTGCTGCTCCGTTTTCACTTCGTTTTGTTTCATTTATAATGCGGACATATTACATCTCCCTCTTTTGCCCTTTTATAGCCTGCACTCTCTTCT</canonical_amplicon>
		<polymorphic_amplicon>CATTGTTCTTCTTCTCCTTATCCCCTCGTCGCTCGGTGCCGCCAAAAAAGCGTCACGTTCCACTTTTTTCAAACCGAATGGCTTCAGTTTTTGGCATCATACACTATTTCAAACGTCCAGTGGTTAAGACTCGGTTAAGAACCTAGGTCTTTGTCTTGTGCTGCTCCGTTTTCAYTTCGTTTTGTTTCATTTATAATGCGGACATATTACATCTCCCTCTTTTGCCCTTTTATAGCCTGCACTCTCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16535</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>147041</contig_pos>
        <strand>+</strand>
        <context>CTTTTCCCCA[A/G]AGCAAATGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGCCCTTTTATAGCCTGCACTCTCTTCTGTTCAACATCACTTTTCCCCA</left_flank>
        <right_flank>AGCAAATGATACTTTCTAGGAAATGAGAAATAAATTTAGATTCTGTCTCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTATCTTCTTGATATTCTCCGTGAGTGTCTATCAAAATGAACCACTTCACTTCTGTGCCCCTCCAATAAAGAAAAAAACACACGAAGAATGTGCCAAAAGTTTTTTCTTTCCTCTGAGGAGGGGTGTTGCACTCTCTTTTTTGACTGTGTGTCTTCCTACTATCTTTCCTTCCTGCTCGCTTTTCGGTAGATGTCATCAATAATTCTGTCCAAACATGCTTTAAACTCATTGTTCTTCTTCTCCTTATCCCCTCGTCGCTCGGTGCCGCCAAAAAAGCGTCACGTTCCACTTTTTTCAAACCGAATGGCTTCAGTTTTTGGCATCATACACTATTTCAAACGTCCAGTGGTTAAGACTCGGTTAAGAACCTAGGTCTTTGTCTTGTGCTGCTCCGTTTTCACTTCGTTTTGTTTCATTTATAATGCGGACATATTACATCTCCCTCTTTTGCCCTTTTATAGCCTGCACTCTCTTCTGTTCAACATCACTTTTCCCCAGAGCAAATGATACTTTCTAGGAAATGAGAAATAAATTTAGATTCTGTCTCGTCGATGAACTTAAACTCAATATTTCAGGGTATCTGACCCCACAAGACAGCGACACGGACAGCGGAATAAGTGCCGATTGTGATCAAGGGTCGCCGAGGGCAGGATCAGTGTTTGGAACGCCGGTCAACGGAGTGGTCAACGGACAACAAGTCACTACACAACGCAGAATTCCTGGTAAAACGTTTAATTGAAAACTACTCAAACGTTATTGATCTTTTTAAGACCTCCCACAGCCATCCTATCAAAACTTTCGGAGTCAATCTTCGGCTGACTATTTGACTCCAAATTCGGCTCGTAAAATTGCTGGATACGGTACTACGCCACGTCGCTTGCCGCTGCAGCCACAACAGCAATCAGTACCACCGGCTGGCAAGACAAAGTATCGAGTCCGATTTGCTGATGAAGTCGATAGTGGGGCATCGACGTCCAGCGGAGCCTCCTCCACACACA</canonical>
            <polymorphic>GTTATCTTCTTGATATTCTCCGTGAGTGTCTATCAAAATGAACCACTTCACTTCTGTGCCCCTCCAATAAAGAAAAAAACACACGAAGAATGTGCCAAAAGTTTTTTCTTTCCTCTGAGGAGGGGTGTTGCACTCTCTTTTTTGACTGTGTGTCTTCCTACTATCTTTCCTTCCTGCTCGCTTTTCGGTAGATGTCATCAATAATTCTGTCCAAACATGCTTTAAACTCATTGTTCTTCTTCTCCTTATCCCCTCGTCGCTCGGTGCCGCCAAAAAAGCGTCACGTTCCACTTTTTTCAAACCGAATGGCTTCAGTTTTTGGCATCATACACTATTTCAAACGTCCAGTGGTTAAGACTCGGTTAAGAACCTAGGTCTTTGTCTTGTGCTGCTCCGTTTTCACTTCGTTTTGTTTCATTTATAATGCGGACATATTACATCTCCCTCTTTTGCCCTTTTATAGCCTGCACTCTCTTCTGTTCAACATCACTTTTCCCCARAGCAAATGATACTTTCTAGGAAATGAGAAATAAATTTAGATTCTGTCTCGTCGATGAACTTAAACTCAATATTTCAGGGTATCTGACCCCACAAGACAGCGACACGGACAGCGGAATAAGTGCCGATTGTGATCAAGGGTCGCCGAGGGCAGGATCAGTGTTTGGAACGCCGGTCAACGGAGTGGTCAACGGACAACAAGTCACTACACAACGCAGAATTCCTGGTAAAACGTTTAATTGAAAACTACTCAAACGTTATTGATCTTTTTAAGACCTCCCACAGCCATCCTATCAAAACTTTCGGAGTCAATCTTCGGCTGACTATTTGACTCCAAATTCGGCTCGTAAAATTGCTGGATACGGTACTACGCCACGTCGCTTGCCGCTGCAGCCACAACAGCAATCAGTACCACCGGCTGGCAAGACAAAGTATCGAGTCCGATTTGCTGATGAAGTCGATAGTGGGGCATCGACGTCCAGCGGAGCCTCCTCCACACACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTTGGCATCATACACTATTT</pcr_primer_p1>
		<pcr_primer_p2>TTAAGTTCATCGACGAGACAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTTTTGGCATCATACACTATTTCAAACGTCCAGTGGTTAAGACTCGGTTAAGAACCTAGGTCTTTGTCTTGTGCTGCTCCGTTTTCACTTCGTTTTGTTTCATTTATAATGCGGACATATTACATCTCCCTCTTTTGCCCTTTTATAGCCTGCACTCTCTTCTGTTCAACATCACTTTTCCCCAGAGCAAATGATACTTTCTAGGAAATGAGAAATAAATTTAGATTCTGTCTCGTCGATGAACTTAA</canonical_amplicon>
		<polymorphic_amplicon>GTTTTTGGCATCATACACTATTTCAAACGTCCAGTGGTTAAGACTCGGTTAAGAACCTAGGTCTTTGTCTTGTGCTGCTCCGTTTTCACTTCGTTTTGTTTCATTTATAATGCGGACATATTACATCTCCCTCTTTTGCCCTTTTATAGCCTGCACTCTCTTCTGTTCAACATCACTTTTCCCCARAGCAAATGATACTTTCTAGGAAATGAGAAATAAATTTAGATTCTGTCTCGTCGATGAACTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16536</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>147061</contig_pos>
        <strand>+</strand>
        <context>TACTTTCTAG[A/G]AAATGAGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCTCTTCTGTTCAACATCACTTTTCCCCAGAGCAAATGATACTTTCTAG</left_flank>
        <right_flank>AAATGAGAAATAAATTTAGATTCTGTCTCGTCGATGAACTTAAACTCAAT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTGAGTGTCTATCAAAATGAACCACTTCACTTCTGTGCCCCTCCAATAAAGAAAAAAACACACGAAGAATGTGCCAAAAGTTTTTTCTTTCCTCTGAGGAGGGGTGTTGCACTCTCTTTTTTGACTGTGTGTCTTCCTACTATCTTTCCTTCCTGCTCGCTTTTCGGTAGATGTCATCAATAATTCTGTCCAAACATGCTTTAAACTCATTGTTCTTCTTCTCCTTATCCCCTCGTCGCTCGGTGCCGCCAAAAAAGCGTCACGTTCCACTTTTTTCAAACCGAATGGCTTCAGTTTTTGGCATCATACACTATTTCAAACGTCCAGTGGTTAAGACTCGGTTAAGAACCTAGGTCTTTGTCTTGTGCTGCTCCGTTTTCACTTCGTTTTGTTTCATTTATAATGCGGACATATTACATCTCCCTCTTTTGCCCTTTTATAGCCTGCACTCTCTTCTGTTCAACATCACTTTTCCCCAGAGCAAATGATACTTTCTAGGAAATGAGAAATAAATTTAGATTCTGTCTCGTCGATGAACTTAAACTCAATATTTCAGGGTATCTGACCCCACAAGACAGCGACACGGACAGCGGAATAAGTGCCGATTGTGATCAAGGGTCGCCGAGGGCAGGATCAGTGTTTGGAACGCCGGTCAACGGAGTGGTCAACGGACAACAAGTCACTACACAACGCAGAATTCCTGGTAAAACGTTTAATTGAAAACTACTCAAACGTTATTGATCTTTTTAAGACCTCCCACAGCCATCCTATCAAAACTTTCGGAGTCAATCTTCGGCTGACTATTTGACTCCAAATTCGGCTCGTAAAATTGCTGGATACGGTACTACGCCACGTCGCTTGCCGCTGCAGCCACAACAGCAATCAGTACCACCGGCTGGCAAGACAAAGTATCGAGTCCGATTTGCTGATGAAGTCGATAGTGGGGCATCGACGTCCAGCGGAGCCTCCTCCACACACATCTCACCAAGGAATGATCCA</canonical>
            <polymorphic>CGTGAGTGTCTATCAAAATGAACCACTTCACTTCTGTGCCCCTCCAATAAAGAAAAAAACACACGAAGAATGTGCCAAAAGTTTTTTCTTTCCTCTGAGGAGGGGTGTTGCACTCTCTTTTTTGACTGTGTGTCTTCCTACTATCTTTCCTTCCTGCTCGCTTTTCGGTAGATGTCATCAATAATTCTGTCCAAACATGCTTTAAACTCATTGTTCTTCTTCTCCTTATCCCCTCGTCGCTCGGTGCCGCCAAAAAAGCGTCACGTTCCACTTTTTTCAAACCGAATGGCTTCAGTTTTTGGCATCATACACTATTTCAAACGTCCAGTGGTTAAGACTCGGTTAAGAACCTAGGTCTTTGTCTTGTGCTGCTCCGTTTTCACTTCGTTTTGTTTCATTTATAATGCGGACATATTACATCTCCCTCTTTTGCCCTTTTATAGCCTGCACTCTCTTCTGTTCAACATCACTTTTCCCCAGAGCAAATGATACTTTCTAGRAAATGAGAAATAAATTTAGATTCTGTCTCGTCGATGAACTTAAACTCAATATTTCAGGGTATCTGACCCCACAAGACAGCGACACGGACAGCGGAATAAGTGCCGATTGTGATCAAGGGTCGCCGAGGGCAGGATCAGTGTTTGGAACGCCGGTCAACGGAGTGGTCAACGGACAACAAGTCACTACACAACGCAGAATTCCTGGTAAAACGTTTAATTGAAAACTACTCAAACGTTATTGATCTTTTTAAGACCTCCCACAGCCATCCTATCAAAACTTTCGGAGTCAATCTTCGGCTGACTATTTGACTCCAAATTCGGCTCGTAAAATTGCTGGATACGGTACTACGCCACGTCGCTTGCCGCTGCAGCCACAACAGCAATCAGTACCACCGGCTGGCAAGACAAAGTATCGAGTCCGATTTGCTGATGAAGTCGATAGTGGGGCATCGACGTCCAGCGGAGCCTCCTCCACACACATCTCACCAAGGAATGATCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGTTAAGACTCGGTTAAGAAC</pcr_primer_p1>
		<pcr_primer_p2>TCAGATACCCTGAAATATTGAGT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GTGGTTAAGACTCGGTTAAGAACCTAGGTCTTTGTCTTGTGCTGCTCCGTTTTCACTTCGTTTTGTTTCATTTATAATGCGGACATATTACATCTCCCTCTTTTGCCCTTTTATAGCCTGCACTCTCTTCTGTTCAACATCACTTTTCCCCAGAGCAAATGATACTTTCTAGGAAATGAGAAATAAATTTAGATTCTGTCTCGTCGATGAACTTAAACTCAATATTTCAGGGTATCTGA</canonical_amplicon>
		<polymorphic_amplicon>GTGGTTAAGACTCGGTTAAGAACCTAGGTCTTTGTCTTGTGCTGCTCCGTTTTCACTTCGTTTTGTTTCATTTATAATGCGGACATATTACATCTCCCTCTTTTGCCCTTTTATAGCCTGCACTCTCTTCTGTTCAACATCACTTTTCCCCAGAGCAAATGATACTTTCTAGRAAATGAGAAATAAATTTAGATTCTGTCTCGTCGATGAACTTAAACTCAATATTTCAGGGTATCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16537</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>186196</contig_pos>
        <strand>+</strand>
        <context>CAGAATATTC[G/T]CAGAGAAAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGAGAAAAATGAAAAAAAAAATTCTTAATGAGATTTCGACCAGAATATTC</left_flank>
        <right_flank>CAGAGAAAGTTATTTTCAAAAGTTTGAGAGTTTCATTAATTGCTAATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGCGCGTCATAATTATAGGCCCCCCCCCCTCGAAATGAGTAAACTGAAAAAACCAAAAATGCTAACAGAAATCTGTAAACGCAGTTTTATTCAGCTTGTAAAAAAACCTACGTGTATTAATTTTCAGCTCAATTGAGTCATTTTTAAGCTCAGAGGGCTCAAAAGTCACTTCTTAGGCCGCGTCATGATTATAAGACCCCCTGGGAAAGGAAAAATCTGAAGTTTTTTAAGGAAAATTTTTAAATGTCAAAATGGTCTCAAAACAGCTGATTTTGACAATATACACAACTATTGAACCCTCTATTCATGTTTCAAAAAAAAATTGCTTTCAGACATTTTCGTCATTTTCAGATTTTTTGGAATAAATCGTGAATAACTTTGCTCCTACTTAAGCTTATGAGCTGAAATTTGTGGGAAAAATTCTAAATGTAAAATGAAGCAAGAATACGAGAAAAATGAAAAAAAAAATTCTTAATGAGATTTCGACCAGAATATTCGCAGAGAAAGTTATTTTCAAAAGTTTGAGAGTTTCATTAATTGCTAATTTTTTGTTGGGATATAGTTTCTGATTTTGAGAGACCTAGAATGATCCGAAATTCCAAAAATTGAATGCTCAGAAACTTTAAAGTTGCTGCAGTTCCACTCCACACATCCAACAGCATATTGTTTTAAAACGTTTTTCTAACAACTAGTTGTACTAGAAGTGATAGTTTTGACAGTGGATAAAAAATCCGATCTTAAAGAATGGATTAGATAATAAATGATGAAAAAATGTTGTGTTGTTTTCGATGTCACTAAATTAAACACTTTGATTGTGATGTACTTACTTGGCTCAGTGGCTGCTGAAGAAGGGTTGCTCACTGTGGATCCCAAGGAGCTAGTTTTTCCAGGGGTTACAGATGAGACAGGAGTCAGGGTGGAGTGATCTGTTATTGTGGATCCCATGGAACTAGATGTTTCAGGTGTGATTGGTGGGACAGGAGATGAAGAAGAGGGTT</canonical>
            <polymorphic>AACGCGCGTCATAATTATAGGCCCCCCCCCCTCGAAATGAGTAAACTGAAAAAACCAAAAATGCTAACAGAAATCTGTAAACGCAGTTTTATTCAGCTTGTAAAAAAACCTACGTGTATTAATTTTCAGCTCAATTGAGTCATTTTTAAGCTCAGAGGGCTCAAAAGTCACTTCTTAGGCCGCGTCATGATTATAAGACCCCCTGGGAAAGGAAAAATCTGAAGTTTTTTAAGGAAAATTTTTAAATGTCAAAATGGTCTCAAAACAGCTGATTTTGACAATATACACAACTATTGAACCCTCTATTCATGTTTCAAAAAAAAATTGCTTTCAGACATTTTCGTCATTTTCAGATTTTTTGGAATAAATCGTGAATAACTTTGCTCCTACTTAAGCTTATGAGCTGAAATTTGTGGGAAAAATTCTAAATGTAAAATGAAGCAAGAATACGAGAAAAATGAAAAAAAAAATTCTTAATGAGATTTCGACCAGAATATTCKCAGAGAAAGTTATTTTCAAAAGTTTGAGAGTTTCATTAATTGCTAATTTTTTGTTGGGATATAGTTTCTGATTTTGAGAGACCTAGAATGATCCGAAATTCCAAAAATTGAATGCTCAGAAACTTTAAAGTTGCTGCAGTTCCACTCCACACATCCAACAGCATATTGTTTTAAAACGTTTTTCTAACAACTAGTTGTACTAGAAGTGATAGTTTTGACAGTGGATAAAAAATCCGATCTTAAAGAATGGATTAGATAATAAATGATGAAAAAATGTTGTGTTGTTTTCGATGTCACTAAATTAAACACTTTGATTGTGATGTACTTACTTGGCTCAGTGGCTGCTGAAGAAGGGTTGCTCACTGTGGATCCCAAGGAGCTAGTTTTTCCAGGGGTTACAGATGAGACAGGAGTCAGGGTGGAGTGATCTGTTATTGTGGATCCCATGGAACTAGATGTTTCAGGTGTGATTGGTGGGACAGGAGATGAAGAAGAGGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTAAATGTAAAATGAAGCAAGA</pcr_primer_p1>
		<pcr_primer_p2>AAAACAATATGCTGTTGGATGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTAAATGTAAAATGAAGCAAGAATACGAGAAAAATGAAAAAAAAAATTCTTAATGAGATTTCGACCAGAATATTCGCAGAGAAAGTTATTTTCAAAAGTTTGAGAGTTTCATTAATTGCTAATTTTTTGTTGGGATATAGTTTCTGATTTTGAGAGACCTAGAATGATCCGAAATTCCAAAAATTGAATGCTCAGAAACTTTAAAGTTGCTGCAGTTCCACTCCACACATCCAACAGCATATTGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTCTAAATGTAAAATGAAGCAAGAATACGAGAAAAATGAAAAAAAAAATTCTTAATGAGATTTCGACCAGAATATTCKCAGAGAAAGTTATTTTCAAAAGTTTGAGAGTTTCATTAATTGCTAATTTTTTGTTGGGATATAGTTTCTGATTTTGAGAGACCTAGAATGATCCGAAATTCCAAAAATTGAATGCTCAGAAACTTTAAAGTTGCTGCAGTTCCACTCCACACATCCAACAGCATATTGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16573</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>187327</contig_pos>
        <strand></strand>
        <context>GATGGGACAG[G/A]AGATGGAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAG</left_flank>
        <right_flank>AGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTAGATGTTG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGACTAGAGGAGCCGACTACTGTGGATCCTATGGAGCTGGATGATGCGGCTGTGGTAGATGGGACTGGAGATGAAGTAAGGGAACCGGTTACTGTGGATCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGGTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAGAAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGGAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTAGATGTTGCCTGTGTGGTTGATGGGACAGCGGATAAAGAAGAAGATTTGGTTACTGTGGATTTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAGGAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGGAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTAGATGTTGCCTGTGTGGTTGATGGGACAGCGGATAAAGAAGAAGATTTGGTTACTGTGGATTTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGG</canonical>
            <polymorphic>GGACTAGAGGAGCCGACTACTGTGGATCCTATGGAGCTGGATGATGCGGCTGTGGTAGATGGGACTGGAGATGAAGTAAGGGAACCGGTTACTGTGGATCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGGTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAGAAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGRAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTAGATGTTGCCTGTGTGGTTGATGGGACAGCGGATAAAGAAGAAGATTTGGTTACTGTGGATTTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAGGAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGGAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTAGATGTTGCCTGTGTGGTTGATGGGACAGCGGATAAAGAAGAAGATTTGGTTACTGTGGATTTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGATGTTGAGGTTGTGGTAGT</pcr_primer_p1>
		<pcr_primer_p2>TTCATCTCCAGTCCCATCTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAGAAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGGAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTAGATGTTGCCTGTGTGGTTGATGGGACAGCGGATAAAGAAGAAGATTTGGTTACTGTGGATTTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAA</canonical_amplicon>
		<polymorphic_amplicon>CTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAGAAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGRAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTAGATGTTGCCTGTGTGGTTGATGGGACAGCGGATAAAGAAGAAGATTTGGTTACTGTGGATTTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16574</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>187269</contig_pos>
        <strand></strand>
        <context>WGGACTAGAG[A/G]AGCCAATGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAG</left_flank>
        <right_flank>AGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTATTGTGGATCCCAAGAAAGTAGATGTTGAAGCTGTGTTAGTTGGGACAGAAGATGGACTAGAGGAGCCGACTACTGTGGATCCTATGGAGCTGGATGATGCGGCTGTGGTAGATGGGACTGGAGATGAAGTAAGGGAACCGGTTACTGTGGATCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGGTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAGAAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGGAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTAGATGTTGCCTGTGTGGTTGATGGGACAGCGGATAAAGAAGAAGATTTGGTTACTGTGGATTTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAGGAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGGAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTAGATGTTGCCTGTGTGGTTGATGGGACAGCGGATAAAGAAGAAGATTTG</canonical>
            <polymorphic>GGTTATTGTGGATCCCAAGAAAGTAGATGTTGAAGCTGTGTTAGTTGGGACAGAAGATGGACTAGAGGAGCCGACTACTGTGGATCCTATGGAGCTGGATGATGCGGCTGTGGTAGATGGGACTGGAGATGAAGTAAGGGAACCGGTTACTGTGGATCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGGTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAGRAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGGAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTAGATGTTGCCTGTGTGGTTGATGGGACAGCGGATAAAGAAGAAGATTTGGTTACTGTGGATTTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAGGAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGGAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTAGATGTTGCCTGTGTGGTTGATGGGACAGCGGATAAAGAAGAAGATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATCTCATGGAACTAGATGTT</pcr_primer_p1>
		<pcr_primer_p2>TAGTTCTAAGGGTTCCACAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>GGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAGAAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGGAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTA</canonical_amplicon>
		<polymorphic_amplicon>GGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAGRAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGGAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16575</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>187259</contig_pos>
        <strand></strand>
        <context>GGATAGGAGA[A/T]GGACTAGAGR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGA</left_flank>
        <right_flank>GGACTAGAGAAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAGGAGCCGGTTATTGTGGATCCCAAGAAAGTAGATGTTGAAGCTGTGTTAGTTGGGACAGAAGATGGACTAGAGGAGCCGACTACTGTGGATCCTATGGAGCTGGATGATGCGGCTGTGGTAGATGGGACTGGAGATGAAGTAAGGGAACCGGTTACTGTGGATCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGGTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAGAAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGGAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTAGATGTTGCCTGTGTGGTTGATGGGACAGCGGATAAAGAAGAAGATTTGGTTACTGTGGATTTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAGGAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGGAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTAGATGTTGCCTGTGTGGTTGATGGGACAGCGGATAAAGA</canonical>
            <polymorphic>TAGAGGAGCCGGTTATTGTGGATCCCAAGAAAGTAGATGTTGAAGCTGTGTTAGTTGGGACAGAAGATGGACTAGAGGAGCCGACTACTGTGGATCCTATGGAGCTGGATGATGCGGCTGTGGTAGATGGGACTGGAGATGAAGTAAGGGAACCGGTTACTGTGGATCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGGTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAWGGACTAGAGAAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGGAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTAGATGTTGCCTGTGTGGTTGATGGGACAGCGGATAAAGAAGAAGATTTGGTTACTGTGGATTTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAGGAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGGAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTAGATGTTGCCTGTGTGGTTGATGGGACAGCGGATAAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATCTCATGGAACTAGATGTT</pcr_primer_p1>
		<pcr_primer_p2>TAGTTCTAAGGGTTCCACAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>GGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAGAAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGGAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTA</canonical_amplicon>
		<polymorphic_amplicon>GGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAWGGACTAGAGAAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGGAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16576</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>187108</contig_pos>
        <strand></strand>
        <context>GTRGATGRGA[C/A]TGGAGATGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGGGA</left_flank>
        <right_flank>TGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCAGGGTGGAGTGATCTGTTATTGTGGATCCCATGGAACTAGATGTTTCAGGTGTGATTGGTGGGACAGGAGATGAAGAAGAGGGTTTGGTTACTGTGGATCCCGCATAGCTAGATGATACGGCTGAGGTTGATGGTACATGAGATGAAGTAGAGGAGCCGGTTATTGTGGATCCCAAGAAAGTAGATGTTGAAGCTGTGTTAGTTGGGACAGAAGATGGACTAGAGGAGCCGACTACTGTGGATCCTATGGAGCTGGATGATGCGGCTGTGGTAGATGGGACTGGAGATGAAGTAAGGGAACCGGTTACTGTGGATCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGGTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAGAAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGGAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTAGATGTTGCCTGTGTGGTTGATGGGACAGCGGATAAAGAAGAAGATTTGGTTACTGTGGATTTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAG</canonical>
            <polymorphic>GTCAGGGTGGAGTGATCTGTTATTGTGGATCCCATGGAACTAGATGTTTCAGGTGTGATTGGTGGGACAGGAGATGAAGAAGAGGGTTTGGTTACTGTGGATCCCGCATAGCTAGATGATACGGCTGAGGTTGATGGTACATGAGATGAAGTAGAGGAGCCGGTTATTGTGGATCCCAAGAAAGTAGATGTTGAAGCTGTGTTAGTTGGGACAGAAGATGGACTAGAGGAGCCGACTACTGTGGATCCTATGGAGCTGGATGATGCGGCTGTGGTAGATGGGAMTGGAGATGAAGTAAGGGAACCGGTTACTGTGGATCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGGTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAGAAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGGAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTAGATGTTGCCTGTGTGGTTGATGGGACAGCGGATAAAGAAGAAGATTTGGTTACTGTGGATTTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTTACTGTGGATCCTATG</pcr_primer_p1>
		<pcr_primer_p2>AACCTCAACATCTAGCACCTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGGTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTT</canonical_amplicon>
		<polymorphic_amplicon>CGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGGTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16577</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>187105</contig_pos>
        <strand></strand>
        <context>GCGGTRGATG[G/A]GAMTGGAGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATG</left_flank>
        <right_flank>GACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGTCAGGGTGGAGTGATCTGTTATTGTGGATCCCATGGAACTAGATGTTTCAGGTGTGATTGGTGGGACAGGAGATGAAGAAGAGGGTTTGGTTACTGTGGATCCCGCATAGCTAGATGATACGGCTGAGGTTGATGGTACATGAGATGAAGTAGAGGAGCCGGTTATTGTGGATCCCAAGAAAGTAGATGTTGAAGCTGTGTTAGTTGGGACAGAAGATGGACTAGAGGAGCCGACTACTGTGGATCCTATGGAGCTGGATGATGCGGCTGTGGTAGATGGGACTGGAGATGAAGTAAGGGAACCGGTTACTGTGGATCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGGTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAGAAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGGAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTAGATGTTGCCTGTGTGGTTGATGGGACAGCGGATAAAGAAGAAGATTTGGTTACTGTGGATTTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAG</canonical>
            <polymorphic>GGAGTCAGGGTGGAGTGATCTGTTATTGTGGATCCCATGGAACTAGATGTTTCAGGTGTGATTGGTGGGACAGGAGATGAAGAAGAGGGTTTGGTTACTGTGGATCCCGCATAGCTAGATGATACGGCTGAGGTTGATGGTACATGAGATGAAGTAGAGGAGCCGGTTATTGTGGATCCCAAGAAAGTAGATGTTGAAGCTGTGTTAGTTGGGACAGAAGATGGACTAGAGGAGCCGACTACTGTGGATCCTATGGAGCTGGATGATGCGGCTGTGGTAGATGGGACTGGAGATGAAGTAAGGGAACCGGTTACTGTGGATCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGGTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGRGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAGAAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGGAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTAGATGTTGCCTGTGTGGTTGATGGGACAGCGGATAAAGAAGAAGATTTGGTTACTGTGGATTTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTTACTGTGGATCCTATG</pcr_primer_p1>
		<pcr_primer_p2>AACCTCAACATCTAGCACCTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGGTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTT</canonical_amplicon>
		<polymorphic_amplicon>CGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGGTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGRGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16578</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>187100</contig_pos>
        <strand></strand>
        <context>CGGCGGCGGT[A/G]GATGRGAMTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGT</left_flank>
        <right_flank>GATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACAGGAGTCAGGGTGGAGTGATCTGTTATTGTGGATCCCATGGAACTAGATGTTTCAGGTGTGATTGGTGGGACAGGAGATGAAGAAGAGGGTTTGGTTACTGTGGATCCCGCATAGCTAGATGATACGGCTGAGGTTGATGGTACATGAGATGAAGTAGAGGAGCCGGTTATTGTGGATCCCAAGAAAGTAGATGTTGAAGCTGTGTTAGTTGGGACAGAAGATGGACTAGAGGAGCCGACTACTGTGGATCCTATGGAGCTGGATGATGCGGCTGTGGTAGATGGGACTGGAGATGAAGTAAGGGAACCGGTTACTGTGGATCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGGTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAGAAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGGAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTAGATGTTGCCTGTGTGGTTGATGGGACAGCGGATAAAGAAGAAGATTTGGTTACTGTGGATTTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGG</canonical>
            <polymorphic>AGACAGGAGTCAGGGTGGAGTGATCTGTTATTGTGGATCCCATGGAACTAGATGTTTCAGGTGTGATTGGTGGGACAGGAGATGAAGAAGAGGGTTTGGTTACTGTGGATCCCGCATAGCTAGATGATACGGCTGAGGTTGATGGTACATGAGATGAAGTAGAGGAGCCGGTTATTGTGGATCCCAAGAAAGTAGATGTTGAAGCTGTGTTAGTTGGGACAGAAGATGGACTAGAGGAGCCGACTACTGTGGATCCTATGGAGCTGGATGATGCGGCTGTGGTAGATGGGACTGGAGATGAAGTAAGGGAACCGGTTACTGTGGATCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGGTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTRGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAGAAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGGAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTAGATGTTGCCTGTGTGGTTGATGGGACAGCGGATAAAGAAGAAGATTTGGTTACTGTGGATTTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAAAGGAACTAGATGTTGAG</pcr_primer_p1>
		<pcr_primer_p2>CTAGTTCCATGAGATCCACAGTA</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>TCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGGTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAG</canonical_amplicon>
		<polymorphic_amplicon>TCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGGTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTRGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16579</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>187044</contig_pos>
        <strand></strand>
        <context>TACAGGAGAT[A/G]AAGTAGAGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGGTACAGGAGAT</left_flank>
        <right_flank>AAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAGGGTTGCTCACTGTGGATCCCAAGGAGCTAGTTTTTCCAGGGGTTACAGATGAGACAGGAGTCAGGGTGGAGTGATCTGTTATTGTGGATCCCATGGAACTAGATGTTTCAGGTGTGATTGGTGGGACAGGAGATGAAGAAGAGGGTTTGGTTACTGTGGATCCCGCATAGCTAGATGATACGGCTGAGGTTGATGGTACATGAGATGAAGTAGAGGAGCCGGTTATTGTGGATCCCAAGAAAGTAGATGTTGAAGCTGTGTTAGTTGGGACAGAAGATGGACTAGAGGAGCCGACTACTGTGGATCCTATGGAGCTGGATGATGCGGCTGTGGTAGATGGGACTGGAGATGAAGTAAGGGAACCGGTTACTGTGGATCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGGTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAGAAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGGAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTAGATGTTGCCTGTGTGGTTGATGGGACAGCGGATAAAGAAGAAGATTTGGTTACTGTGGATTTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTA</canonical>
            <polymorphic>AGAAGGGTTGCTCACTGTGGATCCCAAGGAGCTAGTTTTTCCAGGGGTTACAGATGAGACAGGAGTCAGGGTGGAGTGATCTGTTATTGTGGATCCCATGGAACTAGATGTTTCAGGTGTGATTGGTGGGACAGGAGATGAAGAAGAGGGTTTGGTTACTGTGGATCCCGCATAGCTAGATGATACGGCTGAGGTTGATGGTACATGAGATGAAGTAGAGGAGCCGGTTATTGTGGATCCCAAGAAAGTAGATGTTGAAGCTGTGTTAGTTGGGACAGAAGATGGACTAGAGGAGCCGACTACTGTGGATCCTATGGAGCTGGATGATGCGGCTGTGGTAGATGGGACTGGAGATGAAGTAAGGGAACCGGTTACTGTGGATCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGGTACAGGAGATRAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAGAAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGGAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTAGATGTTGCCTGTGTGGTTGATGGGACAGCGGATAAAGAAGAAGATTTGGTTACTGTGGATTTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAAAGGAACTAGATGTTGAG</pcr_primer_p1>
		<pcr_primer_p2>CTAGTTCCATGAGATCCACAGTA</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>TCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGGTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAG</canonical_amplicon>
		<polymorphic_amplicon>TCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGGTACAGGAGATRAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16580</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>187033</contig_pos>
        <strand></strand>
        <context>GAGCTGGATR[G/A]TACAGGAGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATG</left_flank>
        <right_flank>TACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGGCTGCTGAAGAAGGGTTGCTCACTGTGGATCCCAAGGAGCTAGTTTTTCCAGGGGTTACAGATGAGACAGGAGTCAGGGTGGAGTGATCTGTTATTGTGGATCCCATGGAACTAGATGTTTCAGGTGTGATTGGTGGGACAGGAGATGAAGAAGAGGGTTTGGTTACTGTGGATCCCGCATAGCTAGATGATACGGCTGAGGTTGATGGTACATGAGATGAAGTAGAGGAGCCGGTTATTGTGGATCCCAAGAAAGTAGATGTTGAAGCTGTGTTAGTTGGGACAGAAGATGGACTAGAGGAGCCGACTACTGTGGATCCTATGGAGCTGGATGATGCGGCTGTGGTAGATGGGACTGGAGATGAAGTAAGGGAACCGGTTACTGTGGATCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGGTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAGAAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGGAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTAGATGTTGCCTGTGTGGTTGATGGGACAGCGGATAAAGAAGAAGATTTGGTTACTGTGGATTTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAA</canonical>
            <polymorphic>GTGGCTGCTGAAGAAGGGTTGCTCACTGTGGATCCCAAGGAGCTAGTTTTTCCAGGGGTTACAGATGAGACAGGAGTCAGGGTGGAGTGATCTGTTATTGTGGATCCCATGGAACTAGATGTTTCAGGTGTGATTGGTGGGACAGGAGATGAAGAAGAGGGTTTGGTTACTGTGGATCCCGCATAGCTAGATGATACGGCTGAGGTTGATGGTACATGAGATGAAGTAGAGGAGCCGGTTATTGTGGATCCCAAGAAAGTAGATGTTGAAGCTGTGTTAGTTGGGACAGAAGATGGACTAGAGGAGCCGACTACTGTGGATCCTATGGAGCTGGATGATGCGGCTGTGGTAGATGGGACTGGAGATGAAGTAAGGGAACCGGTTACTGTGGATCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGRTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAGAAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGGAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTAGATGTTGCCTGTGTGGTTGATGGGACAGCGGATAAAGAAGAAGATTTGGTTACTGTGGATTTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>328 288 213 171</canonical_bands>
                <polymorphic_bands>459 328 213</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCAAAGGAACTAGATGTTGAG</pcr_primer_p1>
		<pcr_primer_p2>CTAGTTCCATGAGATCCACAGTA</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>TCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGGTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAG</canonical_amplicon>
		<polymorphic_amplicon>TCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGRTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16581</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>187032</contig_pos>
        <strand></strand>
        <context>TGAGCTGGAT[G/A]RTACAGGAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGAT</left_flank>
        <right_flank>GTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGGCTGCTGAAGAAGGGTTGCTCACTGTGGATCCCAAGGAGCTAGTTTTTCCAGGGGTTACAGATGAGACAGGAGTCAGGGTGGAGTGATCTGTTATTGTGGATCCCATGGAACTAGATGTTTCAGGTGTGATTGGTGGGACAGGAGATGAAGAAGAGGGTTTGGTTACTGTGGATCCCGCATAGCTAGATGATACGGCTGAGGTTGATGGTACATGAGATGAAGTAGAGGAGCCGGTTATTGTGGATCCCAAGAAAGTAGATGTTGAAGCTGTGTTAGTTGGGACAGAAGATGGACTAGAGGAGCCGACTACTGTGGATCCTATGGAGCTGGATGATGCGGCTGTGGTAGATGGGACTGGAGATGAAGTAAGGGAACCGGTTACTGTGGATCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGGTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAGAAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGGAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTAGATGTTGCCTGTGTGGTTGATGGGACAGCGGATAAAGAAGAAGATTTGGTTACTGTGGATTTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCA</canonical>
            <polymorphic>AGTGGCTGCTGAAGAAGGGTTGCTCACTGTGGATCCCAAGGAGCTAGTTTTTCCAGGGGTTACAGATGAGACAGGAGTCAGGGTGGAGTGATCTGTTATTGTGGATCCCATGGAACTAGATGTTTCAGGTGTGATTGGTGGGACAGGAGATGAAGAAGAGGGTTTGGTTACTGTGGATCCCGCATAGCTAGATGATACGGCTGAGGTTGATGGTACATGAGATGAAGTAGAGGAGCCGGTTATTGTGGATCCCAAGAAAGTAGATGTTGAAGCTGTGTTAGTTGGGACAGAAGATGGACTAGAGGAGCCGACTACTGTGGATCCTATGGAGCTGGATGATGCGGCTGTGGTAGATGGGACTGGAGATGAAGTAAGGGAACCGGTTACTGTGGATCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATRGTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAGAAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGGAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTAGATGTTGCCTGTGTGGTTGATGGGACAGCGGATAAAGAAGAAGATTTGGTTACTGTGGATTTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAAAGGAACTAGATGTTGAG</pcr_primer_p1>
		<pcr_primer_p2>CTAGTTCCATGAGATCCACAGTA</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>TCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGGTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAG</canonical_amplicon>
		<polymorphic_amplicon>TCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATRGTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16582</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>186955</contig_pos>
        <strand></strand>
        <context>GAGGCTGTGG[A/T]AGTTGGGACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGGGAACCGGTTACTGTGGATCCAAAGGAACTAGATGTTGAGGCTGTGG</left_flank>
        <right_flank>AGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATGATGAAAAAATGTTGTGTTGTTTTCGATGTCACTAAATTAAACACTTTGATTGTGATGTACTTACTTGGCTCAGTGGCTGCTGAAGAAGGGTTGCTCACTGTGGATCCCAAGGAGCTAGTTTTTCCAGGGGTTACAGATGAGACAGGAGTCAGGGTGGAGTGATCTGTTATTGTGGATCCCATGGAACTAGATGTTTCAGGTGTGATTGGTGGGACAGGAGATGAAGAAGAGGGTTTGGTTACTGTGGATCCCGCATAGCTAGATGATACGGCTGAGGTTGATGGTACATGAGATGAAGTAGAGGAGCCGGTTATTGTGGATCCCAAGAAAGTAGATGTTGAAGCTGTGTTAGTTGGGACAGAAGATGGACTAGAGGAGCCGACTACTGTGGATCCTATGGAGCTGGATGATGCGGCTGTGGTAGATGGGACTGGAGATGAAGTAAGGGAACCGGTTACTGTGGATCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGGTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAGAAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGGAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTAGATGTTGCCTGTGTGGTTGATGGGACAGCGGATAAAGAAGAAGATTTGGTTACTGTGGATTTAGATGTTACGGCGGCGGTAGATG</canonical>
            <polymorphic>TAAATGATGAAAAAATGTTGTGTTGTTTTCGATGTCACTAAATTAAACACTTTGATTGTGATGTACTTACTTGGCTCAGTGGCTGCTGAAGAAGGGTTGCTCACTGTGGATCCCAAGGAGCTAGTTTTTCCAGGGGTTACAGATGAGACAGGAGTCAGGGTGGAGTGATCTGTTATTGTGGATCCCATGGAACTAGATGTTTCAGGTGTGATTGGTGGGACAGGAGATGAAGAAGAGGGTTTGGTTACTGTGGATCCCGCATAGCTAGATGATACGGCTGAGGTTGATGGTACATGAGATGAAGTAGAGGAGCCGGTTATTGTGGATCCCAAGAAAGTAGATGTTGAAGCTGTGTTAGTTGGGACAGAAGATGGACTAGAGGAGCCGACTACTGTGGATCCTATGGAGCTGGATGATGCGGCTGTGGTAGATGGGACTGGAGATGAAGTAAGGGAACCGGTTACTGTGGATCCAAAGGAACTAGATGTTGAGGCTGTGGWAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGGTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAGAAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGGAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTAGATGTTGCCTGTGTGGTTGATGGGACAGCGGATAAAGAAGAAGATTTGGTTACTGTGGATTTAGATGTTACGGCGGCGGTAGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTGTGGATCCCAAGAAAGTA</pcr_primer_p1>
		<pcr_primer_p2>GCAACATCTAGCTCCATAGG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TATTGTGGATCCCAAGAAAGTAGATGTTGAAGCTGTGTTAGTTGGGACAGAAGATGGACTAGAGGAGCCGACTACTGTGGATCCTATGGAGCTGGATGATGCGGCTGTGGTAGATGGGACTGGAGATGAAGTAAGGGAACCGGTTACTGTGGATCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGC</canonical_amplicon>
		<polymorphic_amplicon>TATTGTGGATCCCAAGAAAGTAGATGTTGAAGCTGTGTTAGTTGGGACAGAAGATGGACTAGAGGAGCCGACTACTGTGGATCCTATGGAGCTGGATGATGCGGCTGTGGTAGATGGGACTGGAGATGAAGTAAGGGAACCGGTTACTGTGGATCCAAAGGAACTAGATGTTGAGGCTGTGGWAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16584</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>6066</contig_pos>
        <strand>+</strand>
        <context>TTAATTAACT[A/C]AAATTAAGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATTAGTTTTCAGATTGGATGCGTTTCCTGAAATTTTTAATTAATTAACT</left_flank>
        <right_flank>AAATTAAGCAGTAATTAATTAAACCATGAGTGAGGGTGATTTGGCGGCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATGGGATATGGAGACAAATTATATGATGATCGTAACCGGTGTGACCATGATTGACGTAACCGGAAGTTTTCCACATGTTTCAAGTTTCGAAAATTTTTTGATGAGGGGATAAAGCAAAGATGACCAAAAAAATATTGGAGGATATTAATGGCAGAATGGTGTAACATTCAACTATGAGCCAATTTATCCCGGTTTATGTAAAAGATATCGAAAATTGGTCAATTGGCAAAATTTTCGCCAGATAATAAAAAACATTTCGTCTGATGACAACTTTTTGATGCCTTTTACAGAAAACGAGACATATAGGCTCAACGTTGACGATTTGGAGAGGGGGAGAAGCATTATGTTAAAGTGATTACAGTTATTATGCCAGTATGTTAGCCACATCGTTTTGCACTATTTTCTTTTTTAACTCCTTGATGATGTTCACAAGGTCCAAAACTTCAAGATTAGTTTTCAGATTGGATGCGTTTCCTGAAATTTTTAATTAATTAACTCAAATTAAGCAGTAATTAATTAAACCATGAGTGAGGGTGATTTGGCGGCAATATGGGCAGTAAACGAATTGTTTGCCGTTCTGAAGCGAGAGGTTGTGAGCACAATCGGCGCATAGAGTGTGACCGCATTCAATCAATATTTTTGGGAGGAGTTTCTCGGAGTATTCAAAACTGCAGATATGACATTCTGACCTGAAAAAAAACGATAAGGTGTTTATGGAATCATATGTCTCTAAACAATTGCTGGAAAAAAAAACGTACGAGTGTTGTTTATCTTGAGCGCCGGGTTCTTTATCGACCGGTTGAATTGAAACCAAATTACTTCCCGGGAAAAATGTGCGTTGTTCCGCCAGAATATGAAGAAAGTCGAGGCTTGCAATGAAGGTGATTGGAGAGAAGATTCCTTGAACCATGATGATAGCAGCAAAATCCCATCCAGCAGTTATTTCATATGCGATCCGAATTGAAGCAACCAAGATCACAGCGTTTCCAACAAATACA</canonical>
            <polymorphic>ACATGGGATATGGAGACAAATTATATGATGATCGTAACCGGTGTGACCATGATTGACGTAACCGGAAGTTTTCCACATGTTTCAAGTTTCGAAAATTTTTTGATGAGGGGATAAAGCAAAGATGACCAAAAAAATATTGGAGGATATTAATGGCAGAATGGTGTAACATTCAACTATGAGCCAATTTATCCCGGTTTATGTAAAAGATATCGAAAATTGGTCAATTGGCAAAATTTTCGCCAGATAATAAAAAACATTTCGTCTGATGACAACTTTTTGATGCCTTTTACAGAAAACGAGACATATAGGCTCAACGTTGACGATTTGGAGAGGGGGAGAAGCATTATGTTAAAGTGATTACAGTTATTATGCCAGTATGTTAGCCACATCGTTTTGCACTATTTTCTTTTTTAACTCCTTGATGATGTTCACAAGGTCCAAAACTTCAAGATTAGTTTTCAGATTGGATGCGTTTCCTGAAATTTTTAATTAATTAACTMAAATTAAGCAGTAATTAATTAAACCATGAGTGAGGGTGATTTGGCGGCAATATGGGCAGTAAACGAATTGTTTGCCGTTCTGAAGCGAGAGGTTGTGAGCACAATCGGCGCATAGAGTGTGACCGCATTCAATCAATATTTTTGGGAGGAGTTTCTCGGAGTATTCAAAACTGCAGATATGACATTCTGACCTGAAAAAAAACGATAAGGTGTTTATGGAATCATATGTCTCTAAACAATTGCTGGAAAAAAAAACGTACGAGTGTTGTTTATCTTGAGCGCCGGGTTCTTTATCGACCGGTTGAATTGAAACCAAATTACTTCCCGGGAAAAATGTGCGTTGTTCCGCCAGAATATGAAGAAAGTCGAGGCTTGCAATGAAGGTGATTGGAGAGAAGATTCCTTGAACCATGATGATAGCAGCAAAATCCCATCCAGCAGTTATTTCATATGCGATCCGAATTGAAGCAACCAAGATCACAGCGTTTCCAACAAATACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTAACTCCTTGATGATGTTC</pcr_primer_p1>
		<pcr_primer_p2>GAGAAACTCCTCCCAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTAACTCCTTGATGATGTTCACAAGGTCCAAAACTTCAAGATTAGTTTTCAGATTGGATGCGTTTCCTGAAATTTTTAATTAATTAACTCAAATTAAGCAGTAATTAATTAAACCATGAGTGAGGGTGATTTGGCGGCAATATGGGCAGTAAACGAATTGTTTGCCGTTCTGAAGCGAGAGGTTGTGAGCACAATCGGCGCATAGAGTGTGACCGCATTCAATCAATATTTTTGGGAGGAGTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTAACTCCTTGATGATGTTCACAAGGTCCAAAACTTCAAGATTAGTTTTCAGATTGGATGCGTTTCCTGAAATTTTTAATTAATTAACTMAAATTAAGCAGTAATTAATTAAACCATGAGTGAGGGTGATTTGGCGGCAATATGGGCAGTAAACGAATTGTTTGCCGTTCTGAAGCGAGAGGTTGTGAGCACAATCGGCGCATAGAGTGTGACCGCATTCAATCAATATTTTTGGGAGGAGTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16585</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>6149</contig_pos>
        <strand>+</strand>
        <context>TGCCGTTCTG[A/G]AGCGAGAGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGGTGATTTGGCGGCAATATGGGCAGTAAACGAATTGTTTGCCGTTCTG</left_flank>
        <right_flank>AGCGAGAGGTTGTGAGCACAATCGGCGCATAGAGTGTGACCGCATTCAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTTTCGAAAATTTTTTGATGAGGGGATAAAGCAAAGATGACCAAAAAAATATTGGAGGATATTAATGGCAGAATGGTGTAACATTCAACTATGAGCCAATTTATCCCGGTTTATGTAAAAGATATCGAAAATTGGTCAATTGGCAAAATTTTCGCCAGATAATAAAAAACATTTCGTCTGATGACAACTTTTTGATGCCTTTTACAGAAAACGAGACATATAGGCTCAACGTTGACGATTTGGAGAGGGGGAGAAGCATTATGTTAAAGTGATTACAGTTATTATGCCAGTATGTTAGCCACATCGTTTTGCACTATTTTCTTTTTTAACTCCTTGATGATGTTCACAAGGTCCAAAACTTCAAGATTAGTTTTCAGATTGGATGCGTTTCCTGAAATTTTTAATTAATTAACTCAAATTAAGCAGTAATTAATTAAACCATGAGTGAGGGTGATTTGGCGGCAATATGGGCAGTAAACGAATTGTTTGCCGTTCTGAAGCGAGAGGTTGTGAGCACAATCGGCGCATAGAGTGTGACCGCATTCAATCAATATTTTTGGGAGGAGTTTCTCGGAGTATTCAAAACTGCAGATATGACATTCTGACCTGAAAAAAAACGATAAGGTGTTTATGGAATCATATGTCTCTAAACAATTGCTGGAAAAAAAAACGTACGAGTGTTGTTTATCTTGAGCGCCGGGTTCTTTATCGACCGGTTGAATTGAAACCAAATTACTTCCCGGGAAAAATGTGCGTTGTTCCGCCAGAATATGAAGAAAGTCGAGGCTTGCAATGAAGGTGATTGGAGAGAAGATTCCTTGAACCATGATGATAGCAGCAAAATCCCATCCAGCAGTTATTTCATATGCGATCCGAATTGAAGCAACCAAGATCACAGCGTTTCCAACAAATACAAAAGAAACTACGTCTTCATTGTAGAAAATTTCAGTTGGGAATTGATAGCGGTTCAAGTAAAGAACCAAGTGTATGATGATGAG</canonical>
            <polymorphic>AAGTTTCGAAAATTTTTTGATGAGGGGATAAAGCAAAGATGACCAAAAAAATATTGGAGGATATTAATGGCAGAATGGTGTAACATTCAACTATGAGCCAATTTATCCCGGTTTATGTAAAAGATATCGAAAATTGGTCAATTGGCAAAATTTTCGCCAGATAATAAAAAACATTTCGTCTGATGACAACTTTTTGATGCCTTTTACAGAAAACGAGACATATAGGCTCAACGTTGACGATTTGGAGAGGGGGAGAAGCATTATGTTAAAGTGATTACAGTTATTATGCCAGTATGTTAGCCACATCGTTTTGCACTATTTTCTTTTTTAACTCCTTGATGATGTTCACAAGGTCCAAAACTTCAAGATTAGTTTTCAGATTGGATGCGTTTCCTGAAATTTTTAATTAATTAACTCAAATTAAGCAGTAATTAATTAAACCATGAGTGAGGGTGATTTGGCGGCAATATGGGCAGTAAACGAATTGTTTGCCGTTCTGRAGCGAGAGGTTGTGAGCACAATCGGCGCATAGAGTGTGACCGCATTCAATCAATATTTTTGGGAGGAGTTTCTCGGAGTATTCAAAACTGCAGATATGACATTCTGACCTGAAAAAAAACGATAAGGTGTTTATGGAATCATATGTCTCTAAACAATTGCTGGAAAAAAAAACGTACGAGTGTTGTTTATCTTGAGCGCCGGGTTCTTTATCGACCGGTTGAATTGAAACCAAATTACTTCCCGGGAAAAATGTGCGTTGTTCCGCCAGAATATGAAGAAAGTCGAGGCTTGCAATGAAGGTGATTGGAGAGAAGATTCCTTGAACCATGATGATAGCAGCAAAATCCCATCCAGCAGTTATTTCATATGCGATCCGAATTGAAGCAACCAAGATCACAGCGTTTCCAACAAATACAAAAGAAACTACGTCTTCATTGTAGAAAATTTCAGTTGGGAATTGATAGCGGTTCAAGTAAAGAACCAAGTGTATGATGATGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>271 197 181 124 120 77 30</canonical_bands>
                <polymorphic_bands>271 197 197 181 124 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTAACTCCTTGATGATGTTC</pcr_primer_p1>
		<pcr_primer_p2>GAGAAACTCCTCCCAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTAACTCCTTGATGATGTTCACAAGGTCCAAAACTTCAAGATTAGTTTTCAGATTGGATGCGTTTCCTGAAATTTTTAATTAATTAACTCAAATTAAGCAGTAATTAATTAAACCATGAGTGAGGGTGATTTGGCGGCAATATGGGCAGTAAACGAATTGTTTGCCGTTCTGAAGCGAGAGGTTGTGAGCACAATCGGCGCATAGAGTGTGACCGCATTCAATCAATATTTTTGGGAGGAGTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTAACTCCTTGATGATGTTCACAAGGTCCAAAACTTCAAGATTAGTTTTCAGATTGGATGCGTTTCCTGAAATTTTTAATTAATTAACTCAAATTAAGCAGTAATTAATTAAACCATGAGTGAGGGTGATTTGGCGGCAATATGGGCAGTAAACGAATTGTTTGCCGTTCTGRAGCGAGAGGTTGTGAGCACAATCGGCGCATAGAGTGTGACCGCATTCAATCAATATTTTTGGGAGGAGTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16586</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>6320</contig_pos>
        <strand>+</strand>
        <context>TGGYAAAAAA[A/C]ACGTACGAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATAAGGTGTTTATGGAATCATATGTCTCTAAACAATTGCTGGAAAAAAA</left_flank>
        <right_flank>ACGTACGAGTGTTGTTTATCTTGAGCGCCGGGTTCTTTATCGACCGGTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTCGTCTGATGACAACTTTTTGATGCCTTTTACAGAAAACGAGACATATAGGCTCAACGTTGACGATTTGGAGAGGGGGAGAAGCATTATGTTAAAGTGATTACAGTTATTATGCCAGTATGTTAGCCACATCGTTTTGCACTATTTTCTTTTTTAACTCCTTGATGATGTTCACAAGGTCCAAAACTTCAAGATTAGTTTTCAGATTGGATGCGTTTCCTGAAATTTTTAATTAATTAACTCAAATTAAGCAGTAATTAATTAAACCATGAGTGAGGGTGATTTGGCGGCAATATGGGCAGTAAACGAATTGTTTGCCGTTCTGAAGCGAGAGGTTGTGAGCACAATCGGCGCATAGAGTGTGACCGCATTCAATCAATATTTTTGGGAGGAGTTTCTCGGAGTATTCAAAACTGCAGATATGACATTCTGACCTGAAAAAAAACGATAAGGTGTTTATGGAATCATATGTCTCTAAACAATTGCTGGAAAAAAAAACGTACGAGTGTTGTTTATCTTGAGCGCCGGGTTCTTTATCGACCGGTTGAATTGAAACCAAATTACTTCCCGGGAAAAATGTGCGTTGTTCCGCCAGAATATGAAGAAAGTCGAGGCTTGCAATGAAGGTGATTGGAGAGAAGATTCCTTGAACCATGATGATAGCAGCAAAATCCCATCCAGCAGTTATTTCATATGCGATCCGAATTGAAGCAACCAAGATCACAGCGTTTCCAACAAATACAAAAGAAACTACGTCTTCATTGTAGAAAATTTCAGTTGGGAATTGATAGCGGTTCAAGTAAAGAACCAAGTGTATGATGATGAGTGGAGCAATCACGAGGAGGATCAACATCTAAAATTCTGAGCTTGCCGTTTTTGCTGATGCACTTTGAGCTTAATTATCTAGGTTTCTGTGAGAGATATCAAAAATTGACCAACGGATGAATACCAGGTGATGTTATAATAAGTAATTCATCAGTAGAACATTTTTTGATAT</canonical>
            <polymorphic>CATTTCGTCTGATGACAACTTTTTGATGCCTTTTACAGAAAACGAGACATATAGGCTCAACGTTGACGATTTGGAGAGGGGGAGAAGCATTATGTTAAAGTGATTACAGTTATTATGCCAGTATGTTAGCCACATCGTTTTGCACTATTTTCTTTTTTAACTCCTTGATGATGTTCACAAGGTCCAAAACTTCAAGATTAGTTTTCAGATTGGATGCGTTTCCTGAAATTTTTAATTAATTAACTCAAATTAAGCAGTAATTAATTAAACCATGAGTGAGGGTGATTTGGCGGCAATATGGGCAGTAAACGAATTGTTTGCCGTTCTGAAGCGAGAGGTTGTGAGCACAATCGGCGCATAGAGTGTGACCGCATTCAATCAATATTTTTGGGAGGAGTTTCTCGGAGTATTCAAAACTGCAGATATGACATTCTGACCTGAAAAAAAACGATAAGGTGTTTATGGAATCATATGTCTCTAAACAATTGCTGGAAAAAAAMACGTACGAGTGTTGTTTATCTTGAGCGCCGGGTTCTTTATCGACCGGTTGAATTGAAACCAAATTACTTCCCGGGAAAAATGTGCGTTGTTCCGCCAGAATATGAAGAAAGTCGAGGCTTGCAATGAAGGTGATTGGAGAGAAGATTCCTTGAACCATGATGATAGCAGCAAAATCCCATCCAGCAGTTATTTCATATGCGATCCGAATTGAAGCAACCAAGATCACAGCGTTTCCAACAAATACAAAAGAAACTACGTCTTCATTGTAGAAAATTTCAGTTGGGAATTGATAGCGGTTCAAGTAAAGAACCAAGTGTATGATGATGAGTGGAGCAATCACGAGGAGGATCAACATCTAAAATTCTGAGCTTGCCGTTTTTGCTGATGCACTTTGAGCTTAATTATCTAGGTTTCTGTGAGAGATATCAAAAATTGACCAACGGATGAATACCAGGTGATGTTATAATAAGTAATTCATCAGTAGAACATTTTTTGATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATATGACATTCTGACCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>CTGCTATCATCATGGTTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGATATGACATTCTGACCTGAAAAAAAACGATAAGGTGTTTATGGAATCATATGTCTCTAAACAATTGCTGGAAAAAAAAACGTACGAGTGTTGTTTATCTTGAGCGCCGGGTTCTTTATCGACCGGTTGAATTGAAACCAAATTACTTCCCGGGAAAAATGTGCGTTGTTCCGCCAGAATATGAAGAAAGTCGAGGCTTGCAATGAAGGTGATTGGAGAGAAGATTCCTTGAACCATGATGATAGCAG</canonical_amplicon>
		<polymorphic_amplicon>AGATATGACATTCTGACCTGAAAAAAAACGATAAGGTGTTTATGGAATCATATGTCTCTAAACAATTGCTGGAAAAAAAMACGTACGAGTGTTGTTTATCTTGAGCGCCGGGTTCTTTATCGACCGGTTGAATTGAAACCAAATTACTTCCCGGGAAAAATGTGCGTTGTTCCGCCAGAATATGAAGAAAGTCGAGGCTTGCAATGAAGGTGATTGGAGAGAAGATTCCTTGAACCATGATGATAGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16588</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>6334</contig_pos>
        <strand>+</strand>
        <context>TACGAGTGTT[C/G]TTTATCTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGAATCATATGTCTCTAAACAATTGCTGGAAAAAAAAACGTACGAGTGTT</left_flank>
        <right_flank>TTTATCTTGAGCGCCGGGTTCTTTATCGACCGGTTGAATTGAAACCAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAACTTTTTGATGCCTTTTACAGAAAACGAGACATATAGGCTCAACGTTGACGATTTGGAGAGGGGGAGAAGCATTATGTTAAAGTGATTACAGTTATTATGCCAGTATGTTAGCCACATCGTTTTGCACTATTTTCTTTTTTAACTCCTTGATGATGTTCACAAGGTCCAAAACTTCAAGATTAGTTTTCAGATTGGATGCGTTTCCTGAAATTTTTAATTAATTAACTCAAATTAAGCAGTAATTAATTAAACCATGAGTGAGGGTGATTTGGCGGCAATATGGGCAGTAAACGAATTGTTTGCCGTTCTGAAGCGAGAGGTTGTGAGCACAATCGGCGCATAGAGTGTGACCGCATTCAATCAATATTTTTGGGAGGAGTTTCTCGGAGTATTCAAAACTGCAGATATGACATTCTGACCTGAAAAAAAACGATAAGGTGTTTATGGAATCATATGTCTCTAAACAATTGCTGGAAAAAAAAACGTACGAGTGTTGTTTATCTTGAGCGCCGGGTTCTTTATCGACCGGTTGAATTGAAACCAAATTACTTCCCGGGAAAAATGTGCGTTGTTCCGCCAGAATATGAAGAAAGTCGAGGCTTGCAATGAAGGTGATTGGAGAGAAGATTCCTTGAACCATGATGATAGCAGCAAAATCCCATCCAGCAGTTATTTCATATGCGATCCGAATTGAAGCAACCAAGATCACAGCGTTTCCAACAAATACAAAAGAAACTACGTCTTCATTGTAGAAAATTTCAGTTGGGAATTGATAGCGGTTCAAGTAAAGAACCAAGTGTATGATGATGAGTGGAGCAATCACGAGGAGGATCAACATCTAAAATTCTGAGCTTGCCGTTTTTGCTGATGCACTTTGAGCTTAATTATCTAGGTTTCTGTGAGAGATATCAAAAATTGACCAACGGATGAATACCAGGTGATGTTATAATAAGTAATTCATCAGTAGAACATTTTTTGATATTTTTTGAAGGAACT</canonical>
            <polymorphic>ACAACTTTTTGATGCCTTTTACAGAAAACGAGACATATAGGCTCAACGTTGACGATTTGGAGAGGGGGAGAAGCATTATGTTAAAGTGATTACAGTTATTATGCCAGTATGTTAGCCACATCGTTTTGCACTATTTTCTTTTTTAACTCCTTGATGATGTTCACAAGGTCCAAAACTTCAAGATTAGTTTTCAGATTGGATGCGTTTCCTGAAATTTTTAATTAATTAACTCAAATTAAGCAGTAATTAATTAAACCATGAGTGAGGGTGATTTGGCGGCAATATGGGCAGTAAACGAATTGTTTGCCGTTCTGAAGCGAGAGGTTGTGAGCACAATCGGCGCATAGAGTGTGACCGCATTCAATCAATATTTTTGGGAGGAGTTTCTCGGAGTATTCAAAACTGCAGATATGACATTCTGACCTGAAAAAAAACGATAAGGTGTTTATGGAATCATATGTCTCTAAACAATTGCTGGAAAAAAAAACGTACGAGTGTTSTTTATCTTGAGCGCCGGGTTCTTTATCGACCGGTTGAATTGAAACCAAATTACTTCCCGGGAAAAATGTGCGTTGTTCCGCCAGAATATGAAGAAAGTCGAGGCTTGCAATGAAGGTGATTGGAGAGAAGATTCCTTGAACCATGATGATAGCAGCAAAATCCCATCCAGCAGTTATTTCATATGCGATCCGAATTGAAGCAACCAAGATCACAGCGTTTCCAACAAATACAAAAGAAACTACGTCTTCATTGTAGAAAATTTCAGTTGGGAATTGATAGCGGTTCAAGTAAAGAACCAAGTGTATGATGATGAGTGGAGCAATCACGAGGAGGATCAACATCTAAAATTCTGAGCTTGCCGTTTTTGCTGATGCACTTTGAGCTTAATTATCTAGGTTTCTGTGAGAGATATCAAAAATTGACCAACGGATGAATACCAGGTGATGTTATAATAAGTAATTCATCAGTAGAACATTTTTTGATATTTTTTGAAGGAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATATGACATTCTGACCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>CTGCTATCATCATGGTTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGATATGACATTCTGACCTGAAAAAAAACGATAAGGTGTTTATGGAATCATATGTCTCTAAACAATTGCTGGAAAAAAAAACGTACGAGTGTTGTTTATCTTGAGCGCCGGGTTCTTTATCGACCGGTTGAATTGAAACCAAATTACTTCCCGGGAAAAATGTGCGTTGTTCCGCCAGAATATGAAGAAAGTCGAGGCTTGCAATGAAGGTGATTGGAGAGAAGATTCCTTGAACCATGATGATAGCAG</canonical_amplicon>
		<polymorphic_amplicon>AGATATGACATTCTGACCTGAAAAAAAACGATAAGGTGTTTATGGAATCATATGTCTCTAAACAATTGCTGGAAAAAAAAACGTACGAGTGTTSTTTATCTTGAGCGCCGGGTTCTTTATCGACCGGTTGAATTGAAACCAAATTACTTCCCGGGAAAAATGTGCGTTGTTCCGCCAGAATATGAAGAAAGTCGAGGCTTGCAATGAAGGTGATTGGAGAGAAGATTCCTTGAACCATGATGATAGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16597</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>9144</contig_pos>
        <strand>+</strand>
        <context>AAAATAGAAA[A/C]CAATTGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTCTCAAAAAATAGAAA</left_flank>
        <right_flank>CAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGCGCAAAAAAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAAACGTCGGGTGCTGAAACGTCCAAGATTCGATTTAGGCTTTTCGGAGCTTCCGAGAGCTCTCAACAAAAAAAAGAAAAAAAAAGAAAAGGAAATGATAAAATTAGTGATTATGTGAGCTTTTATACTCATTCAAATTTCACACTTTTGTTTCTCTGCGTCTTTCTTCTCTATCTCGTTACTAAGCGACCAGCTCGTGGTTGGCACTATAGGTTTACTAATTGCGGACTCCTGGGGCTAAATCAGGAAAAATTTTCTGCTGATAGAAGTCTCTTGAAAAGTTAAATTCGTATAGTTGGCTCTTGTTTTTCAAATGATCACTAGAATTGCTAGAAGGAGCATTCTGTTTGGATAGATAGGGAACATTTCTATGATGGAACGATTCATCATGTCTTCATAACCTCAAAGCAGGATCCGATAAAAAAAATAGCATCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTCTCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGCGCAAAAAAATTTTGCCAACGCATATAAGTTTATTTAGGCGTACTTTTAGTAATGACATCGTTTTCGAAATTATGAGCAAAATTTTCGTTTTTTTTTAAGTTTCCGACTGTGAGCTTAGCAATATTTGTAGTACGGTAGAGAAGAAAATAAATTTTTTTTAAACAAAAAACAACGAATTGGAATGAACAATGAGCGTTCGGTGTGTAAAACCGCTATGTAACAATGCAGAAAAGTTCTGAAACGTCGGGTTCTGAATCATCGAGTTTTGAAATGTTGAGTTCTGCAACGTCGGGGGCTTATACGTCCAGGATCCGATTTTCAACAGGCCTCTAAGAGCTTCCGAAAGCCTTCACCAGAGAAAGAAAAAAGTGAAAATGATAAAATTAGTGTTTATCGGAGCTTTTATACTCATTCTAATTTCACACTTTTGTTTCTCTGCGTCTCTCTTCTCTCTCTCTCGTT</canonical>
            <polymorphic>CTGAAACGTCGGGTGCTGAAACGTCCAAGATTCGATTTAGGCTTTTCGGAGCTTCCGAGAGCTCTCAACAAAAAAAAGAAAAAAAAAGAAAAGGAAATGATAAAATTAGTGATTATGTGAGCTTTTATACTCATTCAAATTTCACACTTTTGTTTCTCTGCGTCTTTCTTCTCTATCTCGTTACTAAGCGACCAGCTCGTGGTTGGCACTATAGGTTTACTAATTGCGGACTCCTGGGGCTAAATCAGGAAAAATTTTCTGCTGATAGAAGTCTCTTGAAAAGTTAAATTCGTATAGTTGGCTCTTGTTTTTCAAATGATCACTAGAATTGCTAGAAGGAGCATTCTGTTTGGATAGATAGGGAACATTTCTATGATGGAACGATTCATCATGTCTTCATAACCTCAAAGCAGGATCCGATAAAAAAAATAGCATCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTCTCAAAAAATAGAAAMCAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGCGCAAAAAAATTTTGCCAACGCATATAAGTTTATTTAGGCGTACTTTTAGTAATGACATCGTTTTCGAAATTATGAGCAAAATTTTCGTTTTTTTTTAAGTTTCCGACTGTGAGCTTAGCAATATTTGTAGTACGGTAGAGAAGAAAATAAATTTTTTTTAAACAAAAAACAACGAATTGGAATGAACAATGAGCGTTCGGTGTGTAAAACCGCTATGTAACAATGCAGAAAAGTTCTGAAACGTCGGGTTCTGAATCATCGAGTTTTGAAATGTTGAGTTCTGCAACGTCGGGGGCTTATACGTCCAGGATCCGATTTTCAACAGGCCTCTAAGAGCTTCCGAAAGCCTTCACCAGAGAAAGAAAAAAGTGAAAATGATAAAATTAGTGTTTATCGGAGCTTTTATACTCATTCTAATTTCACACTTTTGTTTCTCTGCGTCTCTCTTCTCTCTCTCTCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGATTCATCATGTCTTCATAAC</pcr_primer_p1>
		<pcr_primer_p2>AAAAACGAAAATTTTGCTCATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGATTCATCATGTCTTCATAACCTCAAAGCAGGATCCGATAAAAAAAATAGCATCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTCTCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGCGCAAAAAAATTTTGCCAACGCATATAAGTTTATTTAGGCGTACTTTTAGTAATGACATCGTTTTCGAAATTATGAGCAAAATTTTCGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>ACGATTCATCATGTCTTCATAACCTCAAAGCAGGATCCGATAAAAAAAATAGCATCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTCTCAAAAAATAGAAAMCAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGCGCAAAAAAATTTTGCCAACGCATATAAGTTTATTTAGGCGTACTTTTAGTAATGACATCGTTTTCGAAATTATGAGCAAAATTTTCGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16598</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>9129</contig_pos>
        <strand></strand>
        <context>CTCCAAAATT[C/T]TCAAAAAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATT</left_flank>
        <right_flank>TCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAACGTCGGGGTTCTGAAACGTCGGGTGCTGAAACGTCCAAGATTCGATTTAGGCTTTTCGGAGCTTCCGAGAGCTCTCAACAAAAAAAAGAAAAAAAAAGAAAAGGAAATGATAAAATTAGTGATTATGTGAGCTTTTATACTCATTCAAATTTCACACTTTTGTTTCTCTGCGTCTTTCTTCTCTATCTCGTTACTAAGCGACCAGCTCGTGGTTGGCACTATAGGTTTACTAATTGCGGACTCCTGGGGCTAAATCAGGAAAAATTTTCTGCTGATAGAAGTCTCTTGAAAAGTTAAATTCGTATAGTTGGCTCTTGTTTTTCAAATGATCACTAGAATTGCTAGAAGGAGCATTCTGTTTGGATAGATAGGGAACATTTCTATGATGGAACGATTCATCATGTCTTCATAACCTCAAAGCAGGATCCGATAAAAAAAATAGCATCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTCTCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGCGCAAAAAAATTTTGCCAACGCATATAAGTTTATTTAGGCGTACTTTTAGTAATGACATCGTTTTCGAAATTATGAGCAAAATTTTCGTTTTTTTTTAAGTTTCCGACTGTGAGCTTAGCAATATTTGTAGTACGGTAGAGAAGAAAATAAATTTTTTTTAAACAAAAAACAACGAATTGGAATGAACAATGAGCGTTCGGTGTGTAAAACCGCTATGTAACAATGCAGAAAAGTTCTGAAACGTCGGGTTCTGAATCATCGAGTTTTGAAATGTTGAGTTCTGCAACGTCGGGGGCTTATACGTCCAGGATCCGATTTTCAACAGGCCTCTAAGAGCTTCCGAAAGCCTTCACCAGAGAAAGAAAAAAGTGAAAATGATAAAATTAGTGTTTATCGGAGCTTTTATACTCATTCTAATTTCACACTTTTGTTTCTCTGCGTCTCTCT</canonical>
            <polymorphic>TGAAACGTCGGGGTTCTGAAACGTCGGGTGCTGAAACGTCCAAGATTCGATTTAGGCTTTTCGGAGCTTCCGAGAGCTCTCAACAAAAAAAAGAAAAAAAAAGAAAAGGAAATGATAAAATTAGTGATTATGTGAGCTTTTATACTCATTCAAATTTCACACTTTTGTTTCTCTGCGTCTTTCTTCTCTATCTCGTTACTAAGCGACCAGCTCGTGGTTGGCACTATAGGTTTACTAATTGCGGACTCCTGGGGCTAAATCAGGAAAAATTTTCTGCTGATAGAAGTCTCTTGAAAAGTTAAATTCGTATAGTTGGCTCTTGTTTTTCAAATGATCACTAGAATTGCTAGAAGGAGCATTCTGTTTGGATAGATAGGGAACATTTCTATGATGGAACGATTCATCATGTCTTCATAACCTCAAAGCAGGATCCGATAAAAAAAATAGCATCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTYTCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGCGCAAAAAAATTTTGCCAACGCATATAAGTTTATTTAGGCGTACTTTTAGTAATGACATCGTTTTCGAAATTATGAGCAAAATTTTCGTTTTTTTTTAAGTTTCCGACTGTGAGCTTAGCAATATTTGTAGTACGGTAGAGAAGAAAATAAATTTTTTTTAAACAAAAAACAACGAATTGGAATGAACAATGAGCGTTCGGTGTGTAAAACCGCTATGTAACAATGCAGAAAAGTTCTGAAACGTCGGGTTCTGAATCATCGAGTTTTGAAATGTTGAGTTCTGCAACGTCGGGGGCTTATACGTCCAGGATCCGATTTTCAACAGGCCTCTAAGAGCTTCCGAAAGCCTTCACCAGAGAAAGAAAAAAGTGAAAATGATAAAATTAGTGTTTATCGGAGCTTTTATACTCATTCTAATTTCACACTTTTGTTTCTCTGCGTCTCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>298 194 152 115 72 70 37 34 28</canonical_bands>
                <polymorphic_bands>298 222 152 115 72 70 37 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGATTCATCATGTCTTCATAAC</pcr_primer_p1>
		<pcr_primer_p2>AAAAACGAAAATTTTGCTCATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGATTCATCATGTCTTCATAACCTCAAAGCAGGATCCGATAAAAAAAATAGCATCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTCTCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGCGCAAAAAAATTTTGCCAACGCATATAAGTTTATTTAGGCGTACTTTTAGTAATGACATCGTTTTCGAAATTATGAGCAAAATTTTCGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>ACGATTCATCATGTCTTCATAACCTCAAAGCAGGATCCGATAAAAAAAATAGCATCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTYTCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGCGCAAAAAAATTTTGCCAACGCATATAAGTTTATTTAGGCGTACTTTTAGTAATGACATCGTTTTCGAAATTATGAGCAAAATTTTCGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16599</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>9080</contig_pos>
        <strand></strand>
        <context>AAAATAGCYT[C/T]TCTACATTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATCATGTCTTCATAACCTCAAAGCAGGATCCGATAAAAAAAATAGCAT</left_flank>
        <right_flank>TCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTCT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACAATGCAGAAAAGTTCTGAAACGTCAGGTTCTGAATTGTCTAGTTCTGAAACGTCGGGGTTCTGAAACGTCGGGTGCTGAAACGTCCAAGATTCGATTTAGGCTTTTCGGAGCTTCCGAGAGCTCTCAACAAAAAAAAGAAAAAAAAAGAAAAGGAAATGATAAAATTAGTGATTATGTGAGCTTTTATACTCATTCAAATTTCACACTTTTGTTTCTCTGCGTCTTTCTTCTCTATCTCGTTACTAAGCGACCAGCTCGTGGTTGGCACTATAGGTTTACTAATTGCGGACTCCTGGGGCTAAATCAGGAAAAATTTTCTGCTGATAGAAGTCTCTTGAAAAGTTAAATTCGTATAGTTGGCTCTTGTTTTTCAAATGATCACTAGAATTGCTAGAAGGAGCATTCTGTTTGGATAGATAGGGAACATTTCTATGATGGAACGATTCATCATGTCTTCATAACCTCAAAGCAGGATCCGATAAAAAAAATAGCATCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTCTCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGCGCAAAAAAATTTTGCCAACGCATATAAGTTTATTTAGGCGTACTTTTAGTAATGACATCGTTTTCGAAATTATGAGCAAAATTTTCGTTTTTTTTTAAGTTTCCGACTGTGAGCTTAGCAATATTTGTAGTACGGTAGAGAAGAAAATAAATTTTTTTTAAACAAAAAACAACGAATTGGAATGAACAATGAGCGTTCGGTGTGTAAAACCGCTATGTAACAATGCAGAAAAGTTCTGAAACGTCGGGTTCTGAATCATCGAGTTTTGAAATGTTGAGTTCTGCAACGTCGGGGGCTTATACGTCCAGGATCCGATTTTCAACAGGCCTCTAAGAGCTTCCGAAAGCCTTCACCAGAGAAAGAAAAAAGTGAAAATGATAAAATTAGTGTTTATCGGA</canonical>
            <polymorphic>CAACAATGCAGAAAAGTTCTGAAACGTCAGGTTCTGAATTGTCTAGTTCTGAAACGTCGGGGTTCTGAAACGTCGGGTGCTGAAACGTCCAAGATTCGATTTAGGCTTTTCGGAGCTTCCGAGAGCTCTCAACAAAAAAAAGAAAAAAAAAGAAAAGGAAATGATAAAATTAGTGATTATGTGAGCTTTTATACTCATTCAAATTTCACACTTTTGTTTCTCTGCGTCTTTCTTCTCTATCTCGTTACTAAGCGACCAGCTCGTGGTTGGCACTATAGGTTTACTAATTGCGGACTCCTGGGGCTAAATCAGGAAAAATTTTCTGCTGATAGAAGTCTCTTGAAAAGTTAAATTCGTATAGTTGGCTCTTGTTTTTCAAATGATCACTAGAATTGCTAGAAGGAGCATTCTGTTTGGATAGATAGGGAACATTTCTATGATGGAACGATTCATCATGTCTTCATAACCTCAAAGCAGGATCCGATAAAAAAAATAGCATYTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTCTCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGCGCAAAAAAATTTTGCCAACGCATATAAGTTTATTTAGGCGTACTTTTAGTAATGACATCGTTTTCGAAATTATGAGCAAAATTTTCGTTTTTTTTTAAGTTTCCGACTGTGAGCTTAGCAATATTTGTAGTACGGTAGAGAAGAAAATAAATTTTTTTTAAACAAAAAACAACGAATTGGAATGAACAATGAGCGTTCGGTGTGTAAAACCGCTATGTAACAATGCAGAAAAGTTCTGAAACGTCGGGTTCTGAATCATCGAGTTTTGAAATGTTGAGTTCTGCAACGTCGGGGGCTTATACGTCCAGGATCCGATTTTCAACAGGCCTCTAAGAGCTTCCGAAAGCCTTCACCAGAGAAAGAAAAAAGTGAAAATGATAAAATTAGTGTTTATCGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATAGTTGGCTCTTGTTTTTCA</pcr_primer_p1>
		<pcr_primer_p2>GCACTTTTAGACATCGTTTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTATAGTTGGCTCTTGTTTTTCAAATGATCACTAGAATTGCTAGAAGGAGCATTCTGTTTGGATAGATAGGGAACATTTCTATGATGGAACGATTCATCATGTCTTCATAACCTCAAAGCAGGATCCGATAAAAAAAATAGCATCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTCTCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGC</canonical_amplicon>
		<polymorphic_amplicon>GTATAGTTGGCTCTTGTTTTTCAAATGATCACTAGAATTGCTAGAAGGAGCATTCTGTTTGGATAGATAGGGAACATTTCTATGATGGAACGATTCATCATGTCTTCATAACCTCAAAGCAGGATCCGATAAAAAAAATAGCATYTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTCTCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16600</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>9621</contig_pos>
        <strand>+</strand>
        <context>TGTTTCTCTG[C/G]GTCTCTCTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTTTATCGGAGCTTTTATACTCATTCTAATTTCACACTTTTGTTTCTCTG</left_flank>
        <right_flank>GTCTCTCTTCTCTCTCTCTCGTTGCTAAGCGACGAGCTCGTTGTTGGCAC</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAATTCTCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGCGCAAAAAAATTTTGCCAACGCATATAAGTTTATTTAGGCGTACTTTTAGTAATGACATCGTTTTCGAAATTATGAGCAAAATTTTCGTTTTTTTTTAAGTTTCCGACTGTGAGCTTAGCAATATTTGTAGTACGGTAGAGAAGAAAATAAATTTTTTTTAAACAAAAAACAACGAATTGGAATGAACAATGAGCGTTCGGTGTGTAAAACCGCTATGTAACAATGCAGAAAAGTTCTGAAACGTCGGGTTCTGAATCATCGAGTTTTGAAATGTTGAGTTCTGCAACGTCGGGGGCTTATACGTCCAGGATCCGATTTTCAACAGGCCTCTAAGAGCTTCCGAAAGCCTTCACCAGAGAAAGAAAAAAGTGAAAATGATAAAATTAGTGTTTATCGGAGCTTTTATACTCATTCTAATTTCACACTTTTGTTTCTCTGCGTCTCTCTTCTCTCTCTCTCGTTGCTAAGCGACGAGCTCGTTGTTGGCACTATAGGTTAACTAATTGCAGACTCTTGGGACTTAATCAGGAAAAATTTCTGCCGAAAAGAAGTCGTCTGAAAAACAAAATCGTATAGTTGGGGCTTTTGAAGTGATCACATGGAAGTTTTTTGAGCGAGTTTTCGTTTTGATGGACAGGGTACAATAGGATACGAGGGTCCGATGGTGAAAAATCCTTCATGAAATTAGGCGATTCTCAGGACAGAAAGCGGATTTTTATAAAAACAGCTGTTCGGCGCTCATAGGTGTTGGTCATTTGTGAAGATTCAGTGATGTCAGCTACCGTATGGTGGTCAAATACAGTACCGGCCAATATGATATACAAAATCGTATTTTCAGTTGATTTTTACCATTTTCAAAGTCGACTGTCAAGTTTTCGATCACTTTGAAAATTTTGGAGGGTTTGAAACAGAGCTAGCATTAAAAATTTAGTTTCCCCG</canonical>
            <polymorphic>CAAAATTCTCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGCGCAAAAAAATTTTGCCAACGCATATAAGTTTATTTAGGCGTACTTTTAGTAATGACATCGTTTTCGAAATTATGAGCAAAATTTTCGTTTTTTTTTAAGTTTCCGACTGTGAGCTTAGCAATATTTGTAGTACGGTAGAGAAGAAAATAAATTTTTTTTAAACAAAAAACAACGAATTGGAATGAACAATGAGCGTTCGGTGTGTAAAACCGCTATGTAACAATGCAGAAAAGTTCTGAAACGTCGGGTTCTGAATCATCGAGTTTTGAAATGTTGAGTTCTGCAACGTCGGGGGCTTATACGTCCAGGATCCGATTTTCAACAGGCCTCTAAGAGCTTCCGAAAGCCTTCACCAGAGAAAGAAAAAAGTGAAAATGATAAAATTAGTGTTTATCGGAGCTTTTATACTCATTCTAATTTCACACTTTTGTTTCTCTGSGTCTCTCTTCTCTCTCTCTCGTTGCTAAGCGACGAGCTCGTTGTTGGCACTATAGGTTAACTAATTGCAGACTCTTGGGACTTAATCAGGAAAAATTTCTGCCGAAAAGAAGTCGTCTGAAAAACAAAATCGTATAGTTGGGGCTTTTGAAGTGATCACATGGAAGTTTTTTGAGCGAGTTTTCGTTTTGATGGACAGGGTACAATAGGATACGAGGGTCCGATGGTGAAAAATCCTTCATGAAATTAGGCGATTCTCAGGACAGAAAGCGGATTTTTATAAAAACAGCTGTTCGGCGCTCATAGGTGTTGGTCATTTGTGAAGATTCAGTGATGTCAGCTACCGTATGGTGGTCAAATACAGTACCGGCCAATATGATATACAAAATCGTATTTTCAGTTGATTTTTACCATTTTCAAAGTCGACTGTCAAGTTTTCGATCACTTTGAAAATTTTGGAGGGTTTGAAACAGAGCTAGCATTAAAAATTTAGTTTCCCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTCAACAGGCCTCTAAG</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTCAGACGACTTCTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GATTTTCAACAGGCCTCTAAGAGCTTCCGAAAGCCTTCACCAGAGAAAGAAAAAAGTGAAAATGATAAAATTAGTGTTTATCGGAGCTTTTATACTCATTCTAATTTCACACTTTTGTTTCTCTGCGTCTCTCTTCTCTCTCTCTCGTTGCTAAGCGACGAGCTCGTTGTTGGCACTATAGGTTAACTAATTGCAGACTCTTGGGACTTAATCAGGAAAAATTTCTGCCGAAAAGAAGTCGTCTGAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>GATTTTCAACAGGCCTCTAAGAGCTTCCGAAAGCCTTCACCAGAGAAAGAAAAAAGTGAAAATGATAAAATTAGTGTTTATCGGAGCTTTTATACTCATTCTAATTTCACACTTTTGTTTCTCTGSGTCTCTCTTCTCTCTCTCTCGTTGCTAAGCGACGAGCTCGTTGTTGGCACTATAGGTTAACTAATTGCAGACTCTTGGGACTTAATCAGGAAAAATTTCTGCCGAAAAGAAGTCGTCTGAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16601</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>9530</contig_pos>
        <strand>+</strand>
        <context>TTCCGAAAGC[C/T]TTCACCAGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATACGTCCAGGATCCGATTTTCAACAGGCCTCTAAGAGCTTCCGAAAGC</left_flank>
        <right_flank>TTCACCAGAGAAAGAAAAAAGTGAAAATGATAAAATTAGTGTTTATCGGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCATGTCTTCATAACCTCAAAGCAGGATCCGATAAAAAAAATAGCATCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTCTCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGCGCAAAAAAATTTTGCCAACGCATATAAGTTTATTTAGGCGTACTTTTAGTAATGACATCGTTTTCGAAATTATGAGCAAAATTTTCGTTTTTTTTTAAGTTTCCGACTGTGAGCTTAGCAATATTTGTAGTACGGTAGAGAAGAAAATAAATTTTTTTTAAACAAAAAACAACGAATTGGAATGAACAATGAGCGTTCGGTGTGTAAAACCGCTATGTAACAATGCAGAAAAGTTCTGAAACGTCGGGTTCTGAATCATCGAGTTTTGAAATGTTGAGTTCTGCAACGTCGGGGGCTTATACGTCCAGGATCCGATTTTCAACAGGCCTCTAAGAGCTTCCGAAAGCCTTCACCAGAGAAAGAAAAAAGTGAAAATGATAAAATTAGTGTTTATCGGAGCTTTTATACTCATTCTAATTTCACACTTTTGTTTCTCTGCGTCTCTCTTCTCTCTCTCTCGTTGCTAAGCGACGAGCTCGTTGTTGGCACTATAGGTTAACTAATTGCAGACTCTTGGGACTTAATCAGGAAAAATTTCTGCCGAAAAGAAGTCGTCTGAAAAACAAAATCGTATAGTTGGGGCTTTTGAAGTGATCACATGGAAGTTTTTTGAGCGAGTTTTCGTTTTGATGGACAGGGTACAATAGGATACGAGGGTCCGATGGTGAAAAATCCTTCATGAAATTAGGCGATTCTCAGGACAGAAAGCGGATTTTTATAAAAACAGCTGTTCGGCGCTCATAGGTGTTGGTCATTTGTGAAGATTCAGTGATGTCAGCTACCGTATGGTGGTCAAATACAGTACCGGCCAATATGATATACAAAATCGTATTTTCAGTTGATTTTTA</canonical>
            <polymorphic>CATCATGTCTTCATAACCTCAAAGCAGGATCCGATAAAAAAAATAGCATCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTCTCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGCGCAAAAAAATTTTGCCAACGCATATAAGTTTATTTAGGCGTACTTTTAGTAATGACATCGTTTTCGAAATTATGAGCAAAATTTTCGTTTTTTTTTAAGTTTCCGACTGTGAGCTTAGCAATATTTGTAGTACGGTAGAGAAGAAAATAAATTTTTTTTAAACAAAAAACAACGAATTGGAATGAACAATGAGCGTTCGGTGTGTAAAACCGCTATGTAACAATGCAGAAAAGTTCTGAAACGTCGGGTTCTGAATCATCGAGTTTTGAAATGTTGAGTTCTGCAACGTCGGGGGCTTATACGTCCAGGATCCGATTTTCAACAGGCCTCTAAGAGCTTCCGAAAGCYTTCACCAGAGAAAGAAAAAAGTGAAAATGATAAAATTAGTGTTTATCGGAGCTTTTATACTCATTCTAATTTCACACTTTTGTTTCTCTGCGTCTCTCTTCTCTCTCTCTCGTTGCTAAGCGACGAGCTCGTTGTTGGCACTATAGGTTAACTAATTGCAGACTCTTGGGACTTAATCAGGAAAAATTTCTGCCGAAAAGAAGTCGTCTGAAAAACAAAATCGTATAGTTGGGGCTTTTGAAGTGATCACATGGAAGTTTTTTGAGCGAGTTTTCGTTTTGATGGACAGGGTACAATAGGATACGAGGGTCCGATGGTGAAAAATCCTTCATGAAATTAGGCGATTCTCAGGACAGAAAGCGGATTTTTATAAAAACAGCTGTTCGGCGCTCATAGGTGTTGGTCATTTGTGAAGATTCAGTGATGTCAGCTACCGTATGGTGGTCAAATACAGTACCGGCCAATATGATATACAAAATCGTATTTTCAGTTGATTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>265 182 145 107 76 53 51 40 31 30 10 10</canonical_bands>
                <polymorphic_bands>265 182 145 107 76 63 51 40 31 30 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGTAAAACCGCTATGTAACAAT</pcr_primer_p1>
		<pcr_primer_p2>CAGAGAAACAAAAGTGTGAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GTGTAAAACCGCTATGTAACAATGCAGAAAAGTTCTGAAACGTCGGGTTCTGAATCATCGAGTTTTGAAATGTTGAGTTCTGCAACGTCGGGGGCTTATACGTCCAGGATCCGATTTTCAACAGGCCTCTAAGAGCTTCCGAAAGCCTTCACCAGAGAAAGAAAAAAGTGAAAATGATAAAATTAGTGTTTATCGGAGCTTTTATACTCATTCTAATTTCACACTTTTGTTTCTCTG</canonical_amplicon>
		<polymorphic_amplicon>GTGTAAAACCGCTATGTAACAATGCAGAAAAGTTCTGAAACGTCGGGTTCTGAATCATCGAGTTTTGAAATGTTGAGTTCTGCAACGTCGGGGGCTTATACGTCCAGGATCCGATTTTCAACAGGCCTCTAAGAGCTTCCGAAAGCYTTCACCAGAGAAAGAAAAAAGTGAAAATGATAAAATTAGTGTTTATCGGAGCTTTTATACTCATTCTAATTTCACACTTTTGTTTCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16602</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>52975</contig_pos>
        <strand>+</strand>
        <context>TTTTAGTGCG[C/T]TTTTTGTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTACGGTCATCTGGTTGAAATTCTTTTTCTTCAAAGACTTTTAGTGCG</left_flank>
        <right_flank>TTTTTGTCAAATCTTCTCATGTAAAATCTGATGTTTTAGTTGAAAATTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACCCCTTGTTTTTGGCCCTTTTTTGAAATCAAAACGTAAAATACAAGTTTCTTGCAGAAATCGGCAAATAGCTGAAGAAATAGAACTTTTCGAAAATCCTGAAATTGCTAAATTTTCAATTTAGGTCTGTTTTACACCTTTCAAAATTTTCAAACTAATCGGAAACTTGACAGACGAGCTTCAGACTCCGGAAGATGATCAAAATAGCTGAAAATCCACGGAAATTCCTTTTTTAAAATATTTTTTTGACGGGTACTGTAGCTTCAGGCGCCTAAAAAACAAAAACCCACATTAAAATTGATGGCATGGTCGTTGCATAGCACTCTGTCAATTATACTACCGGCGAAAATGGATAAATTGAGCTTTTCGCATAAAATGAGCAATCCGTCCTTGTCCAATAATCCATTACGTTCAGAGTTGCATGAGTTGAATAACTGCAAAACACGGGATTACGGTCATCTGGTTGAAATTCTTTTTCTTCAAAGACTTTTAGTGCGTTTTTTGTCAAATCTTCTCATGTAAAATCTGATGTTTTAGTTGAAAATTCAAAAATCAATACACTCACCCTTTTAAGTTCCTTTACATGTACGTTTTCATCGCTCAAACCTTCATCTTGTTGAGCCATTGACTGCATTCAAATCATTTCGAGAATATTCCTGTAAAAAAGTGATTTTTATTTTCCAATAAACCATCAAAACGCCACGTTTTCAAAAAAAAAAACGAATTTACATAAAAAGGAAAAGCGTATACCGAGAGGAAATAGAAAAAAGAAAAGTAATTTCGAAATAACGGTTGAGAAAAAAATATAAGAAAATATAAATGGTGGGAGGGCGGCAAAAAAGCAAATATGTGTGTATACGAAAACGAGCGTGGGGGTGGAAAATAAAAAATAAAAATGACAAGAAAACGAAAAGAAGCAGCAAGTTATGGACCAAATAGCGAATCAGAATATATGGTCCCATGAGAGATGGAATCTGACGGAACGTACGAAGAGGAGG</canonical>
            <polymorphic>AAACCCCTTGTTTTTGGCCCTTTTTTGAAATCAAAACGTAAAATACAAGTTTCTTGCAGAAATCGGCAAATAGCTGAAGAAATAGAACTTTTCGAAAATCCTGAAATTGCTAAATTTTCAATTTAGGTCTGTTTTACACCTTTCAAAATTTTCAAACTAATCGGAAACTTGACAGACGAGCTTCAGACTCCGGAAGATGATCAAAATAGCTGAAAATCCACGGAAATTCCTTTTTTAAAATATTTTTTTGACGGGTACTGTAGCTTCAGGCGCCTAAAAAACAAAAACCCACATTAAAATTGATGGCATGGTCGTTGCATAGCACTCTGTCAATTATACTACCGGCGAAAATGGATAAATTGAGCTTTTCGCATAAAATGAGCAATCCGTCCTTGTCCAATAATCCATTACGTTCAGAGTTGCATGAGTTGAATAACTGCAAAACACGGGATTACGGTCATCTGGTTGAAATTCTTTTTCTTCAAAGACTTTTAGTGCGYTTTTTGTCAAATCTTCTCATGTAAAATCTGATGTTTTAGTTGAAAATTCAAAAATCAATACACTCACCCTTTTAAGTTCCTTTACATGTACGTTTTCATCGCTCAAACCTTCATCTTGTTGAGCCATTGACTGCATTCAAATCATTTCGAGAATATTCCTGTAAAAAAGTGATTTTTATTTTCCAATAAACCATCAAAACGCCACGTTTTCAAAAAAAAAAACGAATTTACATAAAAAGGAAAAGCGTATACCGAGAGGAAATAGAAAAAAGAAAAGTAATTTCGAAATAACGGTTGAGAAAAAAATATAAGAAAATATAAATGGTGGGAGGGCGGCAAAAAAGCAAATATGTGTGTATACGAAAACGAGCGTGGGGGTGGAAAATAAAAAATAAAAATGACAAGAAAACGAAAAGAAGCAGCAAGTTATGGACCAAATAGCGAATCAGAATATATGGTCCCATGAGAGATGGAATCTGACGGAACGTACGAAGAGGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATGGATAAATTGAGCTTTTC</pcr_primer_p1>
		<pcr_primer_p2>GAAAACGTACATGTAAAGGAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATGGATAAATTGAGCTTTTCGCATAAAATGAGCAATCCGTCCTTGTCCAATAATCCATTACGTTCAGAGTTGCATGAGTTGAATAACTGCAAAACACGGGATTACGGTCATCTGGTTGAAATTCTTTTTCTTCAAAGACTTTTAGTGCGTTTTTTGTCAAATCTTCTCATGTAAAATCTGATGTTTTAGTTGAAAATTCAAAAATCAATACACTCACCCTTTTAAGTTCCTTTACATGTACGTTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAATGGATAAATTGAGCTTTTCGCATAAAATGAGCAATCCGTCCTTGTCCAATAATCCATTACGTTCAGAGTTGCATGAGTTGAATAACTGCAAAACACGGGATTACGGTCATCTGGTTGAAATTCTTTTTCTTCAAAGACTTTTAGTGCGYTTTTTGTCAAATCTTCTCATGTAAAATCTGATGTTTTAGTTGAAAATTCAAAAATCAATACACTCACCCTTTTAAGTTCCTTTACATGTACGTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16603</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>63160</contig_pos>
        <strand>+</strand>
        <context>GCAAGGTTCC[G/T]TAAGCCGATG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTTAAAGTTTTTTAGCTTAATGAAGGGTCTTACGTGAAGCAAGGTTCC</left_flank>
        <right_flank>TAAGCCGATGTTTGACTCCAATGACCTTTGTTATTCTCCTTGAAATTCCA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCAGTGAAAATTCCTCCACCGGCCCGGCCCGCGACATGTATGCTTTAAAATATTTGTTGAAACAATCGGAAACTTGACAGTTGACCCCTAGTCTCCTGAAAATGATCAAAATAAACGGGAATCAGAGGTAAACTAACAACTAAGAGGTAAACTAACTAAAGATGTTGTACATTTCATTGGATGGTACTGTATCGACCATTCGAGCTACCTAATGTGAGCTTGGTTCAAGTCAGTAGCTCCAAAAAATCAACACTGTAAATCGAGTTTTTCAAGAAAAAAACCGCTTTGTAAAGACACATTCTGGCTTTTTAGCATCCTTTATTTCAAAAGAAAGTAATTGGAGGCTGCTAAATTTGTATTCAATTGGTGAAGTTTTTAATCTCTGTATTTTGAGCGTCAATATGGCATCTATAGCTTGAAGCATGAATAGCTTGAAACAGGGCTTTCTAATTTAAAGTTTTTTAGCTTAATGAAGGGTCTTACGTGAAGCAAGGTTCCTTAAGCCGATGTTTGACTCCAATGACCTTTGTTATTCTCCTTGAAATTCCAACCACTCAACTCCCGAATTTTCCAGCGAGCTCACCGACGGAATCGACATTCTTGACGAGAACGGACAGGTGATTGGACAATCACCAGGTGTCGCCAAGTCGGCTATCAGCCAGGTCGTCGTCTCTCGCGTCTTCATGGCAACCCCTACATTCGGTAAGAGAAAAAGATGAATTAAAAATTACAATGAACCCTAATTTTCTCTCCCTTTCAGCTTTCATTCCAGTCGTTGTGAATGCCCTCGAGAAGCGACCATACTTCAAGGCCAATCCGAAGATGTTCCTTCCTCTTCAGACCATCCTCTGCGGCCTTGTTCTCTCCGTGTCGACACCAGTCGGATGCGCGTTGTTCCCACAATTGACACCAGTCACTTTCGACCAAATCGAGCCAGAGCTTGCCGAGAAGCTCAAGAATTTGCCGAACCCGCCAAAGCAGCTTTATTGCAACAAAGGA</canonical>
            <polymorphic>GCCAGTGAAAATTCCTCCACCGGCCCGGCCCGCGACATGTATGCTTTAAAATATTTGTTGAAACAATCGGAAACTTGACAGTTGACCCCTAGTCTCCTGAAAATGATCAAAATAAACGGGAATCAGAGGTAAACTAACAACTAAGAGGTAAACTAACTAAAGATGTTGTACATTTCATTGGATGGTACTGTATCGACCATTCGAGCTACCTAATGTGAGCTTGGTTCAAGTCAGTAGCTCCAAAAAATCAACACTGTAAATCGAGTTTTTCAAGAAAAAAACCGCTTTGTAAAGACACATTCTGGCTTTTTAGCATCCTTTATTTCAAAAGAAAGTAATTGGAGGCTGCTAAATTTGTATTCAATTGGTGAAGTTTTTAATCTCTGTATTTTGAGCGTCAATATGGCATCTATAGCTTGAAGCATGAATAGCTTGAAACAGGGCTTTCTAATTTAAAGTTTTTTAGCTTAATGAAGGGTCTTACGTGAAGCAAGGTTCCKTAAGCCGATGTTTGACTCCAATGACCTTTGTTATTCTCCTTGAAATTCCAACCACTCAACTCCCGAATTTTCCAGCGAGCTCACCGACGGAATCGACATTCTTGACGAGAACGGACAGGTGATTGGACAATCACCAGGTGTCGCCAAGTCGGCTATCAGCCAGGTCGTCGTCTCTCGCGTCTTCATGGCAACCCCTACATTCGGTAAGAGAAAAAGATGAATTAAAAATTACAATGAACCCTAATTTTCTCTCCCTTTCAGCTTTCATTCCAGTCGTTGTGAATGCCCTCGAGAAGCGACCATACTTCAAGGCCAATCCGAAGATGTTCCTTCCTCTTCAGACCATCCTCTGCGGCCTTGTTCTCTCCGTGTCGACACCAGTCGGATGCGCGTTGTTCCCACAATTGACACCAGTCACTTTCGACCAAATCGAGCCAGAGCTTGCCGAGAAGCTCAAGAATTTGCCGAACCCGCCAAAGCAGCTTTATTGCAACAAAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTTAAG</site>
                <isoschizomers>
                    <enzyme>AflII</enzyme>
                    <enzyme>BfrI</enzyme>
                    <enzyme>BspTI</enzyme>
                    <enzyme>Bst98I</enzyme>
                    <enzyme>MspCI</enzyme>
                    <enzyme>Vha464I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>331 278 222 76 46 32 15</canonical_bands>
                <polymorphic_bands>331 278 254 76 46 15</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>499 289 165 47</canonical_bands>
                <polymorphic_bands>788 165 47</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGCTTTCTAATTTAAAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTCTTACCGAATGTAGG</pcr_primer_p2>
		<pcr_amplicon_size>275</pcr_amplicon_size>
		<canonical_amplicon>GGGCTTTCTAATTTAAAGTTTTTTAGCTTAATGAAGGGTCTTACGTGAAGCAAGGTTCCTTAAGCCGATGTTTGACTCCAATGACCTTTGTTATTCTCCTTGAAATTCCAACCACTCAACTCCCGAATTTTCCAGCGAGCTCACCGACGGAATCGACATTCTTGACGAGAACGGACAGGTGATTGGACAATCACCAGGTGTCGCCAAGTCGGCTATCAGCCAGGTCGTCGTCTCTCGCGTCTTCATGGCAACCCCTACATTCGGTAAGAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGGCTTTCTAATTTAAAGTTTTTTAGCTTAATGAAGGGTCTTACGTGAAGCAAGGTTCCKTAAGCCGATGTTTGACTCCAATGACCTTTGTTATTCTCCTTGAAATTCCAACCACTCAACTCCCGAATTTTCCAGCGAGCTCACCGACGGAATCGACATTCTTGACGAGAACGGACAGGTGATTGGACAATCACCAGGTGTCGCCAAGTCGGCTATCAGCCAGGTCGTCGTCTCTCGCGTCTTCATGGCAACCCCTACATTCGGTAAGAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16604</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>63196</contig_pos>
        <strand>+</strand>
        <context>CTTTGTTATT[C/T]TCCTTGAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAGCAAGGTTCCTTAAGCCGATGTTTGACTCCAATGACCTTTGTTATT</left_flank>
        <right_flank>TCCTTGAAATTCCAACCACTCAACTCCCGAATTTTCCAGCGAGCTCACCG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTATGCTTTAAAATATTTGTTGAAACAATCGGAAACTTGACAGTTGACCCCTAGTCTCCTGAAAATGATCAAAATAAACGGGAATCAGAGGTAAACTAACAACTAAGAGGTAAACTAACTAAAGATGTTGTACATTTCATTGGATGGTACTGTATCGACCATTCGAGCTACCTAATGTGAGCTTGGTTCAAGTCAGTAGCTCCAAAAAATCAACACTGTAAATCGAGTTTTTCAAGAAAAAAACCGCTTTGTAAAGACACATTCTGGCTTTTTAGCATCCTTTATTTCAAAAGAAAGTAATTGGAGGCTGCTAAATTTGTATTCAATTGGTGAAGTTTTTAATCTCTGTATTTTGAGCGTCAATATGGCATCTATAGCTTGAAGCATGAATAGCTTGAAACAGGGCTTTCTAATTTAAAGTTTTTTAGCTTAATGAAGGGTCTTACGTGAAGCAAGGTTCCTTAAGCCGATGTTTGACTCCAATGACCTTTGTTATTCTCCTTGAAATTCCAACCACTCAACTCCCGAATTTTCCAGCGAGCTCACCGACGGAATCGACATTCTTGACGAGAACGGACAGGTGATTGGACAATCACCAGGTGTCGCCAAGTCGGCTATCAGCCAGGTCGTCGTCTCTCGCGTCTTCATGGCAACCCCTACATTCGGTAAGAGAAAAAGATGAATTAAAAATTACAATGAACCCTAATTTTCTCTCCCTTTCAGCTTTCATTCCAGTCGTTGTGAATGCCCTCGAGAAGCGACCATACTTCAAGGCCAATCCGAAGATGTTCCTTCCTCTTCAGACCATCCTCTGCGGCCTTGTTCTCTCCGTGTCGACACCAGTCGGATGCGCGTTGTTCCCACAATTGACACCAGTCACTTTCGACCAAATCGAGCCAGAGCTTGCCGAGAAGCTCAAGAATTTGCCGAACCCGCCAAAGCAGCTTTATTGCAACAAAGGATTGTGAATGTGTATCAGTGATAAGCTCTTTCCTGTG</canonical>
            <polymorphic>ATGTATGCTTTAAAATATTTGTTGAAACAATCGGAAACTTGACAGTTGACCCCTAGTCTCCTGAAAATGATCAAAATAAACGGGAATCAGAGGTAAACTAACAACTAAGAGGTAAACTAACTAAAGATGTTGTACATTTCATTGGATGGTACTGTATCGACCATTCGAGCTACCTAATGTGAGCTTGGTTCAAGTCAGTAGCTCCAAAAAATCAACACTGTAAATCGAGTTTTTCAAGAAAAAAACCGCTTTGTAAAGACACATTCTGGCTTTTTAGCATCCTTTATTTCAAAAGAAAGTAATTGGAGGCTGCTAAATTTGTATTCAATTGGTGAAGTTTTTAATCTCTGTATTTTGAGCGTCAATATGGCATCTATAGCTTGAAGCATGAATAGCTTGAAACAGGGCTTTCTAATTTAAAGTTTTTTAGCTTAATGAAGGGTCTTACGTGAAGCAAGGTTCCTTAAGCCGATGTTTGACTCCAATGACCTTTGTTATTYTCCTTGAAATTCCAACCACTCAACTCCCGAATTTTCCAGCGAGCTCACCGACGGAATCGACATTCTTGACGAGAACGGACAGGTGATTGGACAATCACCAGGTGTCGCCAAGTCGGCTATCAGCCAGGTCGTCGTCTCTCGCGTCTTCATGGCAACCCCTACATTCGGTAAGAGAAAAAGATGAATTAAAAATTACAATGAACCCTAATTTTCTCTCCCTTTCAGCTTTCATTCCAGTCGTTGTGAATGCCCTCGAGAAGCGACCATACTTCAAGGCCAATCCGAAGATGTTCCTTCCTCTTCAGACCATCCTCTGCGGCCTTGTTCTCTCCGTGTCGACACCAGTCGGATGCGCGTTGTTCCCACAATTGACACCAGTCACTTTCGACCAAATCGAGCCAGAGCTTGCCGAGAAGCTCAAGAATTTGCCGAACCCGCCAAAGCAGCTTTATTGCAACAAAGGATTGTGAATGTGTATCAGTGATAAGCTCTTTCCTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGCTTAATGAAGGGTCTTACG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTCTTACCGAATGTAGG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAGCTTAATGAAGGGTCTTACGTGAAGCAAGGTTCCTTAAGCCGATGTTTGACTCCAATGACCTTTGTTATTCTCCTTGAAATTCCAACCACTCAACTCCCGAATTTTCCAGCGAGCTCACCGACGGAATCGACATTCTTGACGAGAACGGACAGGTGATTGGACAATCACCAGGTGTCGCCAAGTCGGCTATCAGCCAGGTCGTCGTCTCTCGCGTCTTCATGGCAACCCCTACATTCGGTAAGAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TAGCTTAATGAAGGGTCTTACGTGAAGCAAGGTTCCTTAAGCCGATGTTTGACTCCAATGACCTTTGTTATTYTCCTTGAAATTCCAACCACTCAACTCCCGAATTTTCCAGCGAGCTCACCGACGGAATCGACATTCTTGACGAGAACGGACAGGTGATTGGACAATCACCAGGTGTCGCCAAGTCGGCTATCAGCCAGGTCGTCGTCTCTCGCGTCTTCATGGCAACCCCTACATTCGGTAAGAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16605</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>63278</contig_pos>
        <strand>+</strand>
        <context>AGAACGGACA[C/G]GTGATTGGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTCCAGCGAGCTCACCGACGGAATCGACATTCTTGACGAGAACGGACA</left_flank>
        <right_flank>GTGATTGGACAATCACCAGGTGTCGCCAAGTCGGCTATCAGCCAGGTCGT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAATCAGAGGTAAACTAACAACTAAGAGGTAAACTAACTAAAGATGTTGTACATTTCATTGGATGGTACTGTATCGACCATTCGAGCTACCTAATGTGAGCTTGGTTCAAGTCAGTAGCTCCAAAAAATCAACACTGTAAATCGAGTTTTTCAAGAAAAAAACCGCTTTGTAAAGACACATTCTGGCTTTTTAGCATCCTTTATTTCAAAAGAAAGTAATTGGAGGCTGCTAAATTTGTATTCAATTGGTGAAGTTTTTAATCTCTGTATTTTGAGCGTCAATATGGCATCTATAGCTTGAAGCATGAATAGCTTGAAACAGGGCTTTCTAATTTAAAGTTTTTTAGCTTAATGAAGGGTCTTACGTGAAGCAAGGTTCCTTAAGCCGATGTTTGACTCCAATGACCTTTGTTATTCTCCTTGAAATTCCAACCACTCAACTCCCGAATTTTCCAGCGAGCTCACCGACGGAATCGACATTCTTGACGAGAACGGACAGGTGATTGGACAATCACCAGGTGTCGCCAAGTCGGCTATCAGCCAGGTCGTCGTCTCTCGCGTCTTCATGGCAACCCCTACATTCGGTAAGAGAAAAAGATGAATTAAAAATTACAATGAACCCTAATTTTCTCTCCCTTTCAGCTTTCATTCCAGTCGTTGTGAATGCCCTCGAGAAGCGACCATACTTCAAGGCCAATCCGAAGATGTTCCTTCCTCTTCAGACCATCCTCTGCGGCCTTGTTCTCTCCGTGTCGACACCAGTCGGATGCGCGTTGTTCCCACAATTGACACCAGTCACTTTCGACCAAATCGAGCCAGAGCTTGCCGAGAAGCTCAAGAATTTGCCGAACCCGCCAAAGCAGCTTTATTGCAACAAAGGATTGTGAATGTGTATCAGTGATAAGCTCTTTCCTGTGTCTTATAAATAACTAAAGATAGCATTTGCCCCCCGGTTTTTATCATTTTTTGTCCTACGTGTGTGTTTATATTGCATTGAAA</canonical>
            <polymorphic>GGAATCAGAGGTAAACTAACAACTAAGAGGTAAACTAACTAAAGATGTTGTACATTTCATTGGATGGTACTGTATCGACCATTCGAGCTACCTAATGTGAGCTTGGTTCAAGTCAGTAGCTCCAAAAAATCAACACTGTAAATCGAGTTTTTCAAGAAAAAAACCGCTTTGTAAAGACACATTCTGGCTTTTTAGCATCCTTTATTTCAAAAGAAAGTAATTGGAGGCTGCTAAATTTGTATTCAATTGGTGAAGTTTTTAATCTCTGTATTTTGAGCGTCAATATGGCATCTATAGCTTGAAGCATGAATAGCTTGAAACAGGGCTTTCTAATTTAAAGTTTTTTAGCTTAATGAAGGGTCTTACGTGAAGCAAGGTTCCTTAAGCCGATGTTTGACTCCAATGACCTTTGTTATTCTCCTTGAAATTCCAACCACTCAACTCCCGAATTTTCCAGCGAGCTCACCGACGGAATCGACATTCTTGACGAGAACGGACASGTGATTGGACAATCACCAGGTGTCGCCAAGTCGGCTATCAGCCAGGTCGTCGTCTCTCGCGTCTTCATGGCAACCCCTACATTCGGTAAGAGAAAAAGATGAATTAAAAATTACAATGAACCCTAATTTTCTCTCCCTTTCAGCTTTCATTCCAGTCGTTGTGAATGCCCTCGAGAAGCGACCATACTTCAAGGCCAATCCGAAGATGTTCCTTCCTCTTCAGACCATCCTCTGCGGCCTTGTTCTCTCCGTGTCGACACCAGTCGGATGCGCGTTGTTCCCACAATTGACACCAGTCACTTTCGACCAAATCGAGCCAGAGCTTGCCGAGAAGCTCAAGAATTTGCCGAACCCGCCAAAGCAGCTTTATTGCAACAAAGGATTGTGAATGTGTATCAGTGATAAGCTCTTTCCTGTGTCTTATAAATAACTAAAGATAGCATTTGCCCCCCGGTTTTTATCATTTTTTGTCCTACGTGTGTGTTTATATTGCATTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGCTTAATGAAGGGTCTTACG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTCTTACCGAATGTAGG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAGCTTAATGAAGGGTCTTACGTGAAGCAAGGTTCCTTAAGCCGATGTTTGACTCCAATGACCTTTGTTATTCTCCTTGAAATTCCAACCACTCAACTCCCGAATTTTCCAGCGAGCTCACCGACGGAATCGACATTCTTGACGAGAACGGACAGGTGATTGGACAATCACCAGGTGTCGCCAAGTCGGCTATCAGCCAGGTCGTCGTCTCTCGCGTCTTCATGGCAACCCCTACATTCGGTAAGAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TAGCTTAATGAAGGGTCTTACGTGAAGCAAGGTTCCTTAAGCCGATGTTTGACTCCAATGACCTTTGTTATTCTCCTTGAAATTCCAACCACTCAACTCCCGAATTTTCCAGCGAGCTCACCGACGGAATCGACATTCTTGACGAGAACGGACASGTGATTGGACAATCACCAGGTGTCGCCAAGTCGGCTATCAGCCAGGTCGTCGTCTCTCGCGTCTTCATGGCAACCCCTACATTCGGTAAGAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16606</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>65841</contig_pos>
        <strand>+</strand>
        <context>GCCAGAGATT[A/T]GAAGCTGTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCAAAATTTGAAAGGTTTTGAGATTTTGCAAGTGTTTCGGCCAGAGATT</left_flank>
        <right_flank>GAAGCTGTGCTGTATTTTTCTATAGTTTGATGGTTTATAAGGCTCTTGGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGGAAACAGCAAGACGGCGAGAGTGGAGAAGCACAGGGTCCGCCCCACCGTCTTTTTCTAACAGATACCACGAGATGGAATTTATAGAGAACGGAGAGACAAGAAAAGCTGGAGCTTTTTTTCTCCATTTTCGCCGTGCTAGAAGACGTTTTGAGACGAATAAAGGAGAAGGGAAAATTGCTGTGGGTTTTTTGTTGCTTTCTCTGAAACGCAAAAGAAGCGAACCAAGAAAGAATCGGGTTGGAAAAAGAAGAACACTGCAGAGGAAAAACGAGGGAACAAAAATGAAAAAAGAAGAAGAAGAAGAGAGCGAGCGAGAGAAGGTTCACCCATATACAACGTACCGGAAATTTTGAATGGGGCTCATAAAAATGAAAGACGAGTGCGTTTTGTTTTTTAAAACGGGTTTTTGGGGGAAGAGAGTAACGAATGGAAGGGGTCATGAGGTTCAAAATTTGAAAGGTTTTGAGATTTTGCAAGTGTTTCGGCCAGAGATTAGAAGCTGTGCTGTATTTTTCTATAGTTTGATGGTTTATAAGGCTCTTGGACATTTCGCCACAGTGGTAATACAGGCGGATGGATAGGTTTGGGACAACAAAAATATTTGAAAAGTTTTCAATTTTGCAATTACCAATAGAACATATTCTGAAACTCTTTTTTTTTTCACTTTCCAAATTTTTTGTTGTGTTTTATTAGAGAAAAAAACATTTTTAACAGACCTAAAACGGTTTTTGTAGCCTCAAACTTATCACTGTGACAAAATATCTCAGAATCGTTTTTTACAGTATTCCTATGGTAGTCTGAAAGCCAGGAAGTTCAATTTAGTATGTAAAACCTGGCAAGAAATCAGCTGAAATTTAAATGCTGAACTTTTCTTCCGAAAAGTGCATACATTTTTGAAACTTCACGAAATGAAAATGCTGAGTTTATTTGAGTTCAAGGATTTTTTAAAATTCTGATATCAAAATTCAGGGTACGTCACAGATTCTAAAAATTAG</canonical>
            <polymorphic>TTCGGAAACAGCAAGACGGCGAGAGTGGAGAAGCACAGGGTCCGCCCCACCGTCTTTTTCTAACAGATACCACGAGATGGAATTTATAGAGAACGGAGAGACAAGAAAAGCTGGAGCTTTTTTTCTCCATTTTCGCCGTGCTAGAAGACGTTTTGAGACGAATAAAGGAGAAGGGAAAATTGCTGTGGGTTTTTTGTTGCTTTCTCTGAAACGCAAAAGAAGCGAACCAAGAAAGAATCGGGTTGGAAAAAGAAGAACACTGCAGAGGAAAAACGAGGGAACAAAAATGAAAAAAGAAGAAGAAGAAGAGAGCGAGCGAGAGAAGGTTCACCCATATACAACGTACCGGAAATTTTGAATGGGGCTCATAAAAATGAAAGACGAGTGCGTTTTGTTTTTTAAAACGGGTTTTTGGGGGAAGAGAGTAACGAATGGAAGGGGTCATGAGGTTCAAAATTTGAAAGGTTTTGAGATTTTGCAAGTGTTTCGGCCAGAGATTWGAAGCTGTGCTGTATTTTTCTATAGTTTGATGGTTTATAAGGCTCTTGGACATTTCGCCACAGTGGTAATACAGGCGGATGGATAGGTTTGGGACAACAAAAATATTTGAAAAGTTTTCAATTTTGCAATTACCAATAGAACATATTCTGAAACTCTTTTTTTTTTCACTTTCCAAATTTTTTGTTGTGTTTTATTAGAGAAAAAAACATTTTTAACAGACCTAAAACGGTTTTTGTAGCCTCAAACTTATCACTGTGACAAAATATCTCAGAATCGTTTTTTACAGTATTCCTATGGTAGTCTGAAAGCCAGGAAGTTCAATTTAGTATGTAAAACCTGGCAAGAAATCAGCTGAAATTTAAATGCTGAACTTTTCTTCCGAAAAGTGCATACATTTTTGAAACTTCACGAAATGAAAATGCTGAGTTTATTTGAGTTCAAGGATTTTTTAAAATTCTGATATCAAAATTCAGGGTACGTCACAGATTCTAAAAATTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCATAAAAATGAAAGACGAGTG</pcr_primer_p1>
		<pcr_primer_p2>CTTTTCAAATATTTTTGTTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCATAAAAATGAAAGACGAGTGCGTTTTGTTTTTTAAAACGGGTTTTTGGGGGAAGAGAGTAACGAATGGAAGGGGTCATGAGGTTCAAAATTTGAAAGGTTTTGAGATTTTGCAAGTGTTTCGGCCAGAGATTAGAAGCTGTGCTGTATTTTTCTATAGTTTGATGGTTTATAAGGCTCTTGGACATTTCGCCACAGTGGTAATACAGGCGGATGGATAGGTTTGGGACAACAAAAATATTTGAAAAG</canonical_amplicon>
		<polymorphic_amplicon>CTCATAAAAATGAAAGACGAGTGCGTTTTGTTTTTTAAAACGGGTTTTTGGGGGAAGAGAGTAACGAATGGAAGGGGTCATGAGGTTCAAAATTTGAAAGGTTTTGAGATTTTGCAAGTGTTTCGGCCAGAGATTWGAAGCTGTGCTGTATTTTTCTATAGTTTGATGGTTTATAAGGCTCTTGGACATTTCGCCACAGTGGTAATACAGGCGGATGGATAGGTTTGGGACAACAAAAATATTTGAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16671</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>65569</contig_pos>
        <strand>+</strand>
        <context>AGAAGCGAAC[C/T]AAGAAAGAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTGCTGTGGGTTTTTTGTTGCTTTCTCTGAAACGCAAAAGAAGCGAAC</left_flank>
        <right_flank>AAGAAAGAATCGGGTTGGAAAAAGAAGAACACTGCAGAGGAAAAACGAGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCATGGAGCAGAAACGAATTCTTCAGTTTTGAAAAATGATTGGAAAGGAGCAAGCACATGAAAAGAAAAATGAAAAGGAGCGAAAAAAAATTGGTTGTGGTGTACTTCGTATGACAACAGCGGTTTGCTCTCAATGTGCCCCTTTCGCTTTTTGGAAGCCGTGTCTGTCTGGCACCTCTCCGTTCTCCATATAATCTAATGAATGACAGAGAATGAAAAACGGGTTGGCATGGGACCTGTGTCTCTCCGAACACGCCGTTCTCTTTCGTTTCGGAAACAGCAAGACGGCGAGAGTGGAGAAGCACAGGGTCCGCCCCACCGTCTTTTTCTAACAGATACCACGAGATGGAATTTATAGAGAACGGAGAGACAAGAAAAGCTGGAGCTTTTTTTCTCCATTTTCGCCGTGCTAGAAGACGTTTTGAGACGAATAAAGGAGAAGGGAAAATTGCTGTGGGTTTTTTGTTGCTTTCTCTGAAACGCAAAAGAAGCGAACCAAGAAAGAATCGGGTTGGAAAAAGAAGAACACTGCAGAGGAAAAACGAGGGAACAAAAATGAAAAAAGAAGAAGAAGAAGAGAGCGAGCGAGAGAAGGTTCACCCATATACAACGTACCGGAAATTTTGAATGGGGCTCATAAAAATGAAAGACGAGTGCGTTTTGTTTTTTAAAACGGGTTTTTGGGGGAAGAGAGTAACGAATGGAAGGGGTCATGAGGTTCAAAATTTGAAAGGTTTTGAGATTTTGCAAGTGTTTCGGCCAGAGATTAGAAGCTGTGCTGTATTTTTCTATAGTTTGATGGTTTATAAGGCTCTTGGACATTTCGCCACAGTGGTAATACAGGCGGATGGATAGGTTTGGGACAACAAAAATATTTGAAAAGTTTTCAATTTTGCAATTACCAATAGAACATATTCTGAAACTCTTTTTTTTTTCACTTTCCAAATTTTTTGTTGTGTTTTATTAGAGAAAAAAACATTTTTAACAGACCTAAAAC</canonical>
            <polymorphic>AATTCATGGAGCAGAAACGAATTCTTCAGTTTTGAAAAATGATTGGAAAGGAGCAAGCACATGAAAAGAAAAATGAAAAGGAGCGAAAAAAAATTGGTTGTGGTGTACTTCGTATGACAACAGCGGTTTGCTCTCAATGTGCCCCTTTCGCTTTTTGGAAGCCGTGTCTGTCTGGCACCTCTCCGTTCTCCATATAATCTAATGAATGACAGAGAATGAAAAACGGGTTGGCATGGGACCTGTGTCTCTCCGAACACGCCGTTCTCTTTCGTTTCGGAAACAGCAAGACGGCGAGAGTGGAGAAGCACAGGGTCCGCCCCACCGTCTTTTTCTAACAGATACCACGAGATGGAATTTATAGAGAACGGAGAGACAAGAAAAGCTGGAGCTTTTTTTCTCCATTTTCGCCGTGCTAGAAGACGTTTTGAGACGAATAAAGGAGAAGGGAAAATTGCTGTGGGTTTTTTGTTGCTTTCTCTGAAACGCAAAAGAAGCGAACYAAGAAAGAATCGGGTTGGAAAAAGAAGAACACTGCAGAGGAAAAACGAGGGAACAAAAATGAAAAAAGAAGAAGAAGAAGAGAGCGAGCGAGAGAAGGTTCACCCATATACAACGTACCGGAAATTTTGAATGGGGCTCATAAAAATGAAAGACGAGTGCGTTTTGTTTTTTAAAACGGGTTTTTGGGGGAAGAGAGTAACGAATGGAAGGGGTCATGAGGTTCAAAATTTGAAAGGTTTTGAGATTTTGCAAGTGTTTCGGCCAGAGATTAGAAGCTGTGCTGTATTTTTCTATAGTTTGATGGTTTATAAGGCTCTTGGACATTTCGCCACAGTGGTAATACAGGCGGATGGATAGGTTTGGGACAACAAAAATATTTGAAAAGTTTTCAATTTTGCAATTACCAATAGAACATATTCTGAAACTCTTTTTTTTTTCACTTTCCAAATTTTTTGTTGTGTTTTATTAGAGAAAAAAACATTTTTAACAGACCTAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAAGACGTTTTGAGACGAATA</pcr_primer_p1>
		<pcr_primer_p2>CACTCGTCTTTCATTTTTATGAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TAGAAGACGTTTTGAGACGAATAAAGGAGAAGGGAAAATTGCTGTGGGTTTTTTGTTGCTTTCTCTGAAACGCAAAAGAAGCGAACCAAGAAAGAATCGGGTTGGAAAAAGAAGAACACTGCAGAGGAAAAACGAGGGAACAAAAATGAAAAAAGAAGAAGAAGAAGAGAGCGAGCGAGAGAAGGTTCACCCATATACAACGTACCGGAAATTTTGAATGGGGCTCATAAAAATGAAAGACGAGTG</canonical_amplicon>
		<polymorphic_amplicon>TAGAAGACGTTTTGAGACGAATAAAGGAGAAGGGAAAATTGCTGTGGGTTTTTTGTTGCTTTCTCTGAAACGCAAAAGAAGCGAACYAAGAAAGAATCGGGTTGGAAAAAGAAGAACACTGCAGAGGAAAAACGAGGGAACAAAAATGAAAAAAGAAGAAGAAGAAGAGAGCGAGCGAGAGAAGGTTCACCCATATACAACGTACCGGAAATTTTGAATGGGGCTCATAAAAATGAAAGACGAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16672</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>65460</contig_pos>
        <strand>+</strand>
        <context>AGCTGGAGCT[C/T]TTTTTCTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCACGAGATGGAATTTATAGAGAACGGAGAGACAAGAAAAGCTGGAGCT</left_flank>
        <right_flank>TTTTTCTCCATTTTCGCCGTGCTAGAAGACGTTTTGAGACGAATAAAGGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAAATTGATCAGAAACTTTGCACACGAGCTTCAGACTTCTGAAAATGGCCAAAATGACTGAAAACCGACATTAAAAAAATGTTTTATGTCTTATTGGCCGTTACGGTAATTCATGGAGCAGAAACGAATTCTTCAGTTTTGAAAAATGATTGGAAAGGAGCAAGCACATGAAAAGAAAAATGAAAAGGAGCGAAAAAAAATTGGTTGTGGTGTACTTCGTATGACAACAGCGGTTTGCTCTCAATGTGCCCCTTTCGCTTTTTGGAAGCCGTGTCTGTCTGGCACCTCTCCGTTCTCCATATAATCTAATGAATGACAGAGAATGAAAAACGGGTTGGCATGGGACCTGTGTCTCTCCGAACACGCCGTTCTCTTTCGTTTCGGAAACAGCAAGACGGCGAGAGTGGAGAAGCACAGGGTCCGCCCCACCGTCTTTTTCTAACAGATACCACGAGATGGAATTTATAGAGAACGGAGAGACAAGAAAAGCTGGAGCTTTTTTTCTCCATTTTCGCCGTGCTAGAAGACGTTTTGAGACGAATAAAGGAGAAGGGAAAATTGCTGTGGGTTTTTTGTTGCTTTCTCTGAAACGCAAAAGAAGCGAACCAAGAAAGAATCGGGTTGGAAAAAGAAGAACACTGCAGAGGAAAAACGAGGGAACAAAAATGAAAAAAGAAGAAGAAGAAGAGAGCGAGCGAGAGAAGGTTCACCCATATACAACGTACCGGAAATTTTGAATGGGGCTCATAAAAATGAAAGACGAGTGCGTTTTGTTTTTTAAAACGGGTTTTTGGGGGAAGAGAGTAACGAATGGAAGGGGTCATGAGGTTCAAAATTTGAAAGGTTTTGAGATTTTGCAAGTGTTTCGGCCAGAGATTAGAAGCTGTGCTGTATTTTTCTATAGTTTGATGGTTTATAAGGCTCTTGGACATTTCGCCACAGTGGTAATACAGGCGGATGGATAGGTTTGGGACAACAAAAATATTTGAAAAGTTTTC</canonical>
            <polymorphic>TTCAAATTGATCAGAAACTTTGCACACGAGCTTCAGACTTCTGAAAATGGCCAAAATGACTGAAAACCGACATTAAAAAAATGTTTTATGTCTTATTGGCCGTTACGGTAATTCATGGAGCAGAAACGAATTCTTCAGTTTTGAAAAATGATTGGAAAGGAGCAAGCACATGAAAAGAAAAATGAAAAGGAGCGAAAAAAAATTGGTTGTGGTGTACTTCGTATGACAACAGCGGTTTGCTCTCAATGTGCCCCTTTCGCTTTTTGGAAGCCGTGTCTGTCTGGCACCTCTCCGTTCTCCATATAATCTAATGAATGACAGAGAATGAAAAACGGGTTGGCATGGGACCTGTGTCTCTCCGAACACGCCGTTCTCTTTCGTTTCGGAAACAGCAAGACGGCGAGAGTGGAGAAGCACAGGGTCCGCCCCACCGTCTTTTTCTAACAGATACCACGAGATGGAATTTATAGAGAACGGAGAGACAAGAAAAGCTGGAGCTYTTTTTCTCCATTTTCGCCGTGCTAGAAGACGTTTTGAGACGAATAAAGGAGAAGGGAAAATTGCTGTGGGTTTTTTGTTGCTTTCTCTGAAACGCAAAAGAAGCGAACCAAGAAAGAATCGGGTTGGAAAAAGAAGAACACTGCAGAGGAAAAACGAGGGAACAAAAATGAAAAAAGAAGAAGAAGAAGAGAGCGAGCGAGAGAAGGTTCACCCATATACAACGTACCGGAAATTTTGAATGGGGCTCATAAAAATGAAAGACGAGTGCGTTTTGTTTTTTAAAACGGGTTTTTGGGGGAAGAGAGTAACGAATGGAAGGGGTCATGAGGTTCAAAATTTGAAAGGTTTTGAGATTTTGCAAGTGTTTCGGCCAGAGATTAGAAGCTGTGCTGTATTTTTCTATAGTTTGATGGTTTATAAGGCTCTTGGACATTTCGCCACAGTGGTAATACAGGCGGATGGATAGGTTTGGGACAACAAAAATATTTGAAAAGTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAATGACAGAGAATGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTCTCCTTTATTCGTCTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATGAATGACAGAGAATGAAAAACGGGTTGGCATGGGACCTGTGTCTCTCCGAACACGCCGTTCTCTTTCGTTTCGGAAACAGCAAGACGGCGAGAGTGGAGAAGCACAGGGTCCGCCCCACCGTCTTTTTCTAACAGATACCACGAGATGGAATTTATAGAGAACGGAGAGACAAGAAAAGCTGGAGCTTTTTTTCTCCATTTTCGCCGTGCTAGAAGACGTTTTGAGACGAATAAAGGAGAAG</canonical_amplicon>
		<polymorphic_amplicon>AATGAATGACAGAGAATGAAAAACGGGTTGGCATGGGACCTGTGTCTCTCCGAACACGCCGTTCTCTTTCGTTTCGGAAACAGCAAGACGGCGAGAGTGGAGAAGCACAGGGTCCGCCCCACCGTCTTTTTCTAACAGATACCACGAGATGGAATTTATAGAGAACGGAGAGACAAGAAAAGCTGGAGCTYTTTTTCTCCATTTTCGCCGTGCTAGAAGACGTTTTGAGACGAATAAAGGAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16673</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>65421</contig_pos>
        <strand></strand>
        <context>CCACGAGATG[G/T]KATTTATAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAGCACAGGGTCCGCCCCACCGTCTTTTTCTAACAGATACCACGAGATG</left_flank>
        <right_flank>AATTTATAGAGAACGGAGAGACAAGAAAAGCTGGAGCTTTTTTTCTCCAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGTAAATGCAGATATCTGTTTTACACCTTCCAGAAATTTCAAATTGATCAGAAACTTTGCACACGAGCTTCAGACTTCTGAAAATGGCCAAAATGACTGAAAACCGACATTAAAAAAATGTTTTATGTCTTATTGGCCGTTACGGTAATTCATGGAGCAGAAACGAATTCTTCAGTTTTGAAAAATGATTGGAAAGGAGCAAGCACATGAAAAGAAAAATGAAAAGGAGCGAAAAAAAATTGGTTGTGGTGTACTTCGTATGACAACAGCGGTTTGCTCTCAATGTGCCCCTTTCGCTTTTTGGAAGCCGTGTCTGTCTGGCACCTCTCCGTTCTCCATATAATCTAATGAATGACAGAGAATGAAAAACGGGTTGGCATGGGACCTGTGTCTCTCCGAACACGCCGTTCTCTTTCGTTTCGGAAACAGCAAGACGGCGAGAGTGGAGAAGCACAGGGTCCGCCCCACCGTCTTTTTCTAACAGATACCACGAGATGGAATTTATAGAGAACGGAGAGACAAGAAAAGCTGGAGCTTTTTTTCTCCATTTTCGCCGTGCTAGAAGACGTTTTGAGACGAATAAAGGAGAAGGGAAAATTGCTGTGGGTTTTTTGTTGCTTTCTCTGAAACGCAAAAGAAGCGAACCAAGAAAGAATCGGGTTGGAAAAAGAAGAACACTGCAGAGGAAAAACGAGGGAACAAAAATGAAAAAAGAAGAAGAAGAAGAGAGCGAGCGAGAGAAGGTTCACCCATATACAACGTACCGGAAATTTTGAATGGGGCTCATAAAAATGAAAGACGAGTGCGTTTTGTTTTTTAAAACGGGTTTTTGGGGGAAGAGAGTAACGAATGGAAGGGGTCATGAGGTTCAAAATTTGAAAGGTTTTGAGATTTTGCAAGTGTTTCGGCCAGAGATTAGAAGCTGTGCTGTATTTTTCTATAGTTTGATGGTTTATAAGGCTCTTGGACATTTCGCCACAGTGGTAATACAGGCGGAT</canonical>
            <polymorphic>TCTGTAAATGCAGATATCTGTTTTACACCTTCCAGAAATTTCAAATTGATCAGAAACTTTGCACACGAGCTTCAGACTTCTGAAAATGGCCAAAATGACTGAAAACCGACATTAAAAAAATGTTTTATGTCTTATTGGCCGTTACGGTAATTCATGGAGCAGAAACGAATTCTTCAGTTTTGAAAAATGATTGGAAAGGAGCAAGCACATGAAAAGAAAAATGAAAAGGAGCGAAAAAAAATTGGTTGTGGTGTACTTCGTATGACAACAGCGGTTTGCTCTCAATGTGCCCCTTTCGCTTTTTGGAAGCCGTGTCTGTCTGGCACCTCTCCGTTCTCCATATAATCTAATGAATGACAGAGAATGAAAAACGGGTTGGCATGGGACCTGTGTCTCTCCGAACACGCCGTTCTCTTTCGTTTCGGAAACAGCAAGACGGCGAGAGTGGAGAAGCACAGGGTCCGCCCCACCGTCTTTTTCTAACAGATACCACGAGATGKAATTTATAGAGAACGGAGAGACAAGAAAAGCTGGAGCTTTTTTTCTCCATTTTCGCCGTGCTAGAAGACGTTTTGAGACGAATAAAGGAGAAGGGAAAATTGCTGTGGGTTTTTTGTTGCTTTCTCTGAAACGCAAAAGAAGCGAACCAAGAAAGAATCGGGTTGGAAAAAGAAGAACACTGCAGAGGAAAAACGAGGGAACAAAAATGAAAAAAGAAGAAGAAGAAGAGAGCGAGCGAGAGAAGGTTCACCCATATACAACGTACCGGAAATTTTGAATGGGGCTCATAAAAATGAAAGACGAGTGCGTTTTGTTTTTTAAAACGGGTTTTTGGGGGAAGAGAGTAACGAATGGAAGGGGTCATGAGGTTCAAAATTTGAAAGGTTTTGAGATTTTGCAAGTGTTTCGGCCAGAGATTAGAAGCTGTGCTGTATTTTTCTATAGTTTGATGGTTTATAAGGCTCTTGGACATTTCGCCACAGTGGTAATACAGGCGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNTGG</site>
                <isoschizomers>
                    <enzyme>AccB7I</enzyme>
                    <enzyme>PflBI</enzyme>
                    <enzyme>PflMI</enzyme>
                    <enzyme>Van91I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>333 270 131 126 104 36</canonical_bands>
                <polymorphic_bands>603 131 126 104 36</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGAATGACAGAGAATGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTCTCCTTTATTCGTCTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATGAATGACAGAGAATGAAAAACGGGTTGGCATGGGACCTGTGTCTCTCCGAACACGCCGTTCTCTTTCGTTTCGGAAACAGCAAGACGGCGAGAGTGGAGAAGCACAGGGTCCGCCCCACCGTCTTTTTCTAACAGATACCACGAGATGGAATTTATAGAGAACGGAGAGACAAGAAAAGCTGGAGCTTTTTTTCTCCATTTTCGCCGTGCTAGAAGACGTTTTGAGACGAATAAAGGAGAAG</canonical_amplicon>
		<polymorphic_amplicon>AATGAATGACAGAGAATGAAAAACGGGTTGGCATGGGACCTGTGTCTCTCCGAACACGCCGTTCTCTTTCGTTTCGGAAACAGCAAGACGGCGAGAGTGGAGAAGCACAGGGTCCGCCCCACCGTCTTTTTCTAACAGATACCACGAGATGKAATTTATAGAGAACGGAGAGACAAGAAAAGCTGGAGCTTTTTTTCTCCATTTTCGCCGTGCTAGAAGACGTTTTGAGACGAATAAAGGAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16674</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>65360</contig_pos>
        <strand>+</strand>
        <context>CAGCAAGACG[A/G]CGAGAGTGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTGTCTCTCCGAACACGCCGTTCTCTTTCGTTTCGGAAACAGCAAGACG</left_flank>
        <right_flank>CGAGAGTGGAGAAGCACAGGGTCCGCCCCACCGTCTTTTTCTAACAGATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAACCAGCACCTTTCCGAAATCAGCATCTAGCTTAAAAGCAAGAAAATTTATGCAAGTTCTGTAAATGCAGATATCTGTTTTACACCTTCCAGAAATTTCAAATTGATCAGAAACTTTGCACACGAGCTTCAGACTTCTGAAAATGGCCAAAATGACTGAAAACCGACATTAAAAAAATGTTTTATGTCTTATTGGCCGTTACGGTAATTCATGGAGCAGAAACGAATTCTTCAGTTTTGAAAAATGATTGGAAAGGAGCAAGCACATGAAAAGAAAAATGAAAAGGAGCGAAAAAAAATTGGTTGTGGTGTACTTCGTATGACAACAGCGGTTTGCTCTCAATGTGCCCCTTTCGCTTTTTGGAAGCCGTGTCTGTCTGGCACCTCTCCGTTCTCCATATAATCTAATGAATGACAGAGAATGAAAAACGGGTTGGCATGGGACCTGTGTCTCTCCGAACACGCCGTTCTCTTTCGTTTCGGAAACAGCAAGACGGCGAGAGTGGAGAAGCACAGGGTCCGCCCCACCGTCTTTTTCTAACAGATACCACGAGATGGAATTTATAGAGAACGGAGAGACAAGAAAAGCTGGAGCTTTTTTTCTCCATTTTCGCCGTGCTAGAAGACGTTTTGAGACGAATAAAGGAGAAGGGAAAATTGCTGTGGGTTTTTTGTTGCTTTCTCTGAAACGCAAAAGAAGCGAACCAAGAAAGAATCGGGTTGGAAAAAGAAGAACACTGCAGAGGAAAAACGAGGGAACAAAAATGAAAAAAGAAGAAGAAGAAGAGAGCGAGCGAGAGAAGGTTCACCCATATACAACGTACCGGAAATTTTGAATGGGGCTCATAAAAATGAAAGACGAGTGCGTTTTGTTTTTTAAAACGGGTTTTTGGGGGAAGAGAGTAACGAATGGAAGGGGTCATGAGGTTCAAAATTTGAAAGGTTTTGAGATTTTGCAAGTGTTTCGGCCAGAGATTAGAAGCTGTGCTGTATTTTT</canonical>
            <polymorphic>AAAAAACCAGCACCTTTCCGAAATCAGCATCTAGCTTAAAAGCAAGAAAATTTATGCAAGTTCTGTAAATGCAGATATCTGTTTTACACCTTCCAGAAATTTCAAATTGATCAGAAACTTTGCACACGAGCTTCAGACTTCTGAAAATGGCCAAAATGACTGAAAACCGACATTAAAAAAATGTTTTATGTCTTATTGGCCGTTACGGTAATTCATGGAGCAGAAACGAATTCTTCAGTTTTGAAAAATGATTGGAAAGGAGCAAGCACATGAAAAGAAAAATGAAAAGGAGCGAAAAAAAATTGGTTGTGGTGTACTTCGTATGACAACAGCGGTTTGCTCTCAATGTGCCCCTTTCGCTTTTTGGAAGCCGTGTCTGTCTGGCACCTCTCCGTTCTCCATATAATCTAATGAATGACAGAGAATGAAAAACGGGTTGGCATGGGACCTGTGTCTCTCCGAACACGCCGTTCTCTTTCGTTTCGGAAACAGCAAGACGRCGAGAGTGGAGAAGCACAGGGTCCGCCCCACCGTCTTTTTCTAACAGATACCACGAGATGGAATTTATAGAGAACGGAGAGACAAGAAAAGCTGGAGCTTTTTTTCTCCATTTTCGCCGTGCTAGAAGACGTTTTGAGACGAATAAAGGAGAAGGGAAAATTGCTGTGGGTTTTTTGTTGCTTTCTCTGAAACGCAAAAGAAGCGAACCAAGAAAGAATCGGGTTGGAAAAAGAAGAACACTGCAGAGGAAAAACGAGGGAACAAAAATGAAAAAAGAAGAAGAAGAAGAGAGCGAGCGAGAGAAGGTTCACCCATATACAACGTACCGGAAATTTTGAATGGGGCTCATAAAAATGAAAGACGAGTGCGTTTTGTTTTTTAAAACGGGTTTTTGGGGGAAGAGAGTAACGAATGGAAGGGGTCATGAGGTTCAAAATTTGAAAGGTTTTGAGATTTTGCAAGTGTTTCGGCCAGAGATTAGAAGCTGTGCTGTATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGTGGTGTACTTCGTATGAC</pcr_primer_p1>
		<pcr_primer_p2>CGTGGTATCTGTTAGAAAAAGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTGTGGTGTACTTCGTATGACAACAGCGGTTTGCTCTCAATGTGCCCCTTTCGCTTTTTGGAAGCCGTGTCTGTCTGGCACCTCTCCGTTCTCCATATAATCTAATGAATGACAGAGAATGAAAAACGGGTTGGCATGGGACCTGTGTCTCTCCGAACACGCCGTTCTCTTTCGTTTCGGAAACAGCAAGACGGCGAGAGTGGAGAAGCACAGGGTCCGCCCCACCGTCTTTTTCTAACAGATACCACG</canonical_amplicon>
		<polymorphic_amplicon>GTTGTGGTGTACTTCGTATGACAACAGCGGTTTGCTCTCAATGTGCCCCTTTCGCTTTTTGGAAGCCGTGTCTGTCTGGCACCTCTCCGTTCTCCATATAATCTAATGAATGACAGAGAATGAAAAACGGGTTGGCATGGGACCTGTGTCTCTCCGAACACGCCGTTCTCTTTCGTTTCGGAAACAGCAAGACGRCGAGAGTGGAGAAGCACAGGGTCCGCCCCACCGTCTTTTTCTAACAGATACCACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16675</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>99701</contig_pos>
        <strand></strand>
        <context>TGTTTTTTTT[A/T]AATTTATTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGACCAGGAATTTCAGCTGAAAAATTGATTGCCATTTTTTTGTTTTTTTT</left_flank>
        <right_flank>AATTTATTCTACGATCACTATTTCCAAAAAAAAATACCTCATTCCCATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACGACAGTGCGATAATGCCTTTGCTTCCAACACGACAGTGCGATAATGCCTGTCACCAGAGGCATCTGCCAAAAACTCATGTCGTTTGGCTGGACTTTTTTTTTTGCACCCATCGAATTTTCCGGGCCTTACCCTTCTGAATGAATAGTTGTTTGGATCTCTTTGACATCATCTTGATAGAAAAGACTCCGAGTGAAAAGATCACATAAAAATGGAGTTTACCCACGTTTTCAATCGCAGCCCTCCTCGTTCTGAGCCGATGGAATCAAAAAATTACCAGTGCGTTACCAGACAACTATCAATAGTCATGGACGTTACATTCGTTGATCTAATCCCCTCCGCTTCGAGAAAAATTCCATCAAAATTTTGCCAAAATCGAAAGAAACTTATGCACCAACCTAATACTTCCTTCAAAATTGCGTTTCTACTCTGAACCAATTATCATTCCGACCAGGAATTTCAGCTGAAAAATTGATTGCCATTTTTTTGTTTTTTTTAAATTTATTCTACGATCACTATTTCCAAAAAAAAATACCTCATTCCCATTTTGTTGACGCCAGAAATCTAAAAGTTTTTGATACTTTTTCCAAAGAATGCTCTTGGATCAGATCTGTTCTGTGAGTCATTCATTATTAGTTTTAGCTCCACTGATAATTATTAGTTTTAGCTCCACTGATAATAATTTTATTCAAAATGTTAATATTGTCATTGTTCCACATGAATATTATCATTGTTGCTACAATCCATCGCAAAAATCACCTTTTTCGCGAACAAAAAATCGCATAAAACTATTTTTTATGTTCCTCTTTTTGAAAGTTTTATGTTCAAATTTTAGTGTCGAAAAGTACCACACCGTTTGCCCCCACATGTCAATCGTACGTATGCCTTTTTCACTGTCGTATTAATATACATAAAACACTACTATTTATAAATGTCATTTCTGAAATTTACAGAAATCAAACCGGTTCCCCTTCTACTCTTTTCGCGATGAGGATCAC</canonical>
            <polymorphic>ACACGACAGTGCGATAATGCCTTTGCTTCCAACACGACAGTGCGATAATGCCTGTCACCAGAGGCATCTGCCAAAAACTCATGTCGTTTGGCTGGACTTTTTTTTTTGCACCCATCGAATTTTCCGGGCCTTACCCTTCTGAATGAATAGTTGTTTGGATCTCTTTGACATCATCTTGATAGAAAAGACTCCGAGTGAAAAGATCACATAAAAATGGAGTTTACCCACGTTTTCAATCGCAGCCCTCCTCGTTCTGAGCCGATGGAATCAAAAAATTACCAGTGCGTTACCAGACAACTATCAATAGTCATGGACGTTACATTCGTTGATCTAATCCCCTCCGCTTCGAGAAAAATTCCATCAAAATTTTGCCAAAATCGAAAGAAACTTATGCACCAACCTAATACTTCCTTCAAAATTGCGTTTCTACTCTGAACCAATTATCATTCCGACCAGGAATTTCAGCTGAAAAATTGATTGCCATTTTTTTGTTTTTTTTWAATTTATTCTACGATCACTATTTCCAAAAAAAAATACCTCATTCCCATTTTGTTGACGCCAGAAATCTAAAAGTTTTTGATACTTTTTCCAAAGAATGCTCTTGGATCAGATCTGTTCTGTGAGTCATTCATTATTAGTTTTAGCTCCACTGATAATTATTAGTTTTAGCTCCACTGATAATAATTTTATTCAAAATGTTAATATTGTCATTGTTCCACATGAATATTATCATTGTTGCTACAATCCATCGCAAAAATCACCTTTTTCGCGAACAAAAAATCGCATAAAACTATTTTTTATGTTCCTCTTTTTGAAAGTTTTATGTTCAAATTTTAGTGTCGAAAAGTACCACACCGTTTGCCCCCACATGTCAATCGTACGTATGCCTTTTTCACTGTCGTATTAATATACATAAAACACTACTATTTATAAATGTCATTTCTGAAATTTACAGAAATCAAACCGGTTCCCCTTCTACTCTTTTCGCGATGAGGATCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>329 236 117 117 93 54 43 11</canonical_bands>
                <polymorphic_bands>372 236 117 117 93 54 11</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>498 205 201 96</canonical_bands>
                <polymorphic_bands>699 205 96</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTGCGTTTCTACTCTGAAC</pcr_primer_p1>
		<pcr_primer_p2>TCAGTGGAGCTAAAACTAATAATG</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AAATTGCGTTTCTACTCTGAACCAATTATCATTCCGACCAGGAATTTCAGCTGAAAAATTGATTGCCATTTTTTTGTTTTTTTTAAATTTATTCTACGATCACTATTTCCAAAAAAAAATACCTCATTCCCATTTTGTTGACGCCAGAAATCTAAAAGTTTTTGATACTTTTTCCAAAGAATGCTCTTGGATCAGATCTGTTCTGTGAGTCATTCATTATTAGTTTTAGCTCCACTGA</canonical_amplicon>
		<polymorphic_amplicon>AAATTGCGTTTCTACTCTGAACCAATTATCATTCCGACCAGGAATTTCAGCTGAAAAATTGATTGCCATTTTTTTGTTTTTTTTWAATTTATTCTACGATCACTATTTCCAAAAAAAAATACCTCATTCCCATTTTGTTGACGCCAGAAATCTAAAAGTTTTTGATACTTTTTCCAAAGAATGCTCTTGGATCAGATCTGTTCTGTGAGTCATTCATTATTAGTTTTAGCTCCACTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16676</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>99897</contig_pos>
        <strand>+</strand>
        <context>TTTATTCAAA[A/T]TGTTAATATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCACTGATAATTATTAGTTTTAGCTCCACTGATAATAATTTTATTCAAA</left_flank>
        <right_flank>TGTTAATATTGTCATTGTTCCACATGAATATTATCATTGTTGCTACAATC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAGATCACATAAAAATGGAGTTTACCCACGTTTTCAATCGCAGCCCTCCTCGTTCTGAGCCGATGGAATCAAAAAATTACCAGTGCGTTACCAGACAACTATCAATAGTCATGGACGTTACATTCGTTGATCTAATCCCCTCCGCTTCGAGAAAAATTCCATCAAAATTTTGCCAAAATCGAAAGAAACTTATGCACCAACCTAATACTTCCTTCAAAATTGCGTTTCTACTCTGAACCAATTATCATTCCGACCAGGAATTTCAGCTGAAAAATTGATTGCCATTTTTTTGTTTTTTTTAAATTTATTCTACGATCACTATTTCCAAAAAAAAATACCTCATTCCCATTTTGTTGACGCCAGAAATCTAAAAGTTTTTGATACTTTTTCCAAAGAATGCTCTTGGATCAGATCTGTTCTGTGAGTCATTCATTATTAGTTTTAGCTCCACTGATAATTATTAGTTTTAGCTCCACTGATAATAATTTTATTCAAAATGTTAATATTGTCATTGTTCCACATGAATATTATCATTGTTGCTACAATCCATCGCAAAAATCACCTTTTTCGCGAACAAAAAATCGCATAAAACTATTTTTTATGTTCCTCTTTTTGAAAGTTTTATGTTCAAATTTTAGTGTCGAAAAGTACCACACCGTTTGCCCCCACATGTCAATCGTACGTATGCCTTTTTCACTGTCGTATTAATATACATAAAACACTACTATTTATAAATGTCATTTCTGAAATTTACAGAAATCAAACCGGTTCCCCTTCTACTCTTTTCGCGATGAGGATCACTATCTTCTTGGTGTTCCTAATTTGTGGTGTTCTAATTCAGGTGTATGTATTTTCACACTTAGAAAAACGGTTTTTTTTTTCAGGAAGTGCATGGATTACGAATGCAGAATTGTGATTACTGTGTTAAAGTTCTTCAGTGTGTTTATGGTCAATTGAGAAAAAGTGTCCGTAGTAAACGTTTGTTAGGGAGCAAGTT</canonical>
            <polymorphic>GAAAAGATCACATAAAAATGGAGTTTACCCACGTTTTCAATCGCAGCCCTCCTCGTTCTGAGCCGATGGAATCAAAAAATTACCAGTGCGTTACCAGACAACTATCAATAGTCATGGACGTTACATTCGTTGATCTAATCCCCTCCGCTTCGAGAAAAATTCCATCAAAATTTTGCCAAAATCGAAAGAAACTTATGCACCAACCTAATACTTCCTTCAAAATTGCGTTTCTACTCTGAACCAATTATCATTCCGACCAGGAATTTCAGCTGAAAAATTGATTGCCATTTTTTTGTTTTTTTTAAATTTATTCTACGATCACTATTTCCAAAAAAAAATACCTCATTCCCATTTTGTTGACGCCAGAAATCTAAAAGTTTTTGATACTTTTTCCAAAGAATGCTCTTGGATCAGATCTGTTCTGTGAGTCATTCATTATTAGTTTTAGCTCCACTGATAATTATTAGTTTTAGCTCCACTGATAATAATTTTATTCAAAWTGTTAATATTGTCATTGTTCCACATGAATATTATCATTGTTGCTACAATCCATCGCAAAAATCACCTTTTTCGCGAACAAAAAATCGCATAAAACTATTTTTTATGTTCCTCTTTTTGAAAGTTTTATGTTCAAATTTTAGTGTCGAAAAGTACCACACCGTTTGCCCCCACATGTCAATCGTACGTATGCCTTTTTCACTGTCGTATTAATATACATAAAACACTACTATTTATAAATGTCATTTCTGAAATTTACAGAAATCAAACCGGTTCCCCTTCTACTCTTTTCGCGATGAGGATCACTATCTTCTTGGTGTTCCTAATTTGTGGTGTTCTAATTCAGGTGTATGTATTTTCACACTTAGAAAAACGGTTTTTTTTTTCAGGAAGTGCATGGATTACGAATGCAGAATTGTGATTACTGTGTTAAAGTTCTTCAGTGTGTTTATGGTCAATTGAGAAAAAGTGTCCGTAGTAAACGTTTGTTAGGGAGCAAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAGATCTGTTCTGTGAGTCAT</pcr_primer_p1>
		<pcr_primer_p2>GTGTGGTACTTTTCGACACTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCAGATCTGTTCTGTGAGTCATTCATTATTAGTTTTAGCTCCACTGATAATTATTAGTTTTAGCTCCACTGATAATAATTTTATTCAAAATGTTAATATTGTCATTGTTCCACATGAATATTATCATTGTTGCTACAATCCATCGCAAAAATCACCTTTTTCGCGAACAAAAAATCGCATAAAACTATTTTTTATGTTCCTCTTTTTGAAAGTTTTATGTTCAAATTTTAGTGTCGAAAAGTACCACAC</canonical_amplicon>
		<polymorphic_amplicon>ATCAGATCTGTTCTGTGAGTCATTCATTATTAGTTTTAGCTCCACTGATAATTATTAGTTTTAGCTCCACTGATAATAATTTTATTCAAAWTGTTAATATTGTCATTGTTCCACATGAATATTATCATTGTTGCTACAATCCATCGCAAAAATCACCTTTTTCGCGAACAAAAAATCGCATAAAACTATTTTTTATGTTCCTCTTTTTGAAAGTTTTATGTTCAAATTTTAGTGTCGAAAAGTACCACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16677</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>100088</contig_pos>
        <strand>+</strand>
        <context>CGTACGTATG[A/C]YTTTTTCACT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTGTCGAAAAGTACCACACCGTTTGCCCCCACATGTCAATCGTACGTATG</left_flank>
        <right_flank>CTTTTTCACTGTCGTATTAATATACATAAAACACTACTATTTATAAATGT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTATGCACCAACCTAATACTTCCTTCAAAATTGCGTTTCTACTCTGAACCAATTATCATTCCGACCAGGAATTTCAGCTGAAAAATTGATTGCCATTTTTTTGTTTTTTTTAAATTTATTCTACGATCACTATTTCCAAAAAAAAATACCTCATTCCCATTTTGTTGACGCCAGAAATCTAAAAGTTTTTGATACTTTTTCCAAAGAATGCTCTTGGATCAGATCTGTTCTGTGAGTCATTCATTATTAGTTTTAGCTCCACTGATAATTATTAGTTTTAGCTCCACTGATAATAATTTTATTCAAAATGTTAATATTGTCATTGTTCCACATGAATATTATCATTGTTGCTACAATCCATCGCAAAAATCACCTTTTTCGCGAACAAAAAATCGCATAAAACTATTTTTTATGTTCCTCTTTTTGAAAGTTTTATGTTCAAATTTTAGTGTCGAAAAGTACCACACCGTTTGCCCCCACATGTCAATCGTACGTATGCCTTTTTCACTGTCGTATTAATATACATAAAACACTACTATTTATAAATGTCATTTCTGAAATTTACAGAAATCAAACCGGTTCCCCTTCTACTCTTTTCGCGATGAGGATCACTATCTTCTTGGTGTTCCTAATTTGTGGTGTTCTAATTCAGGTGTATGTATTTTCACACTTAGAAAAACGGTTTTTTTTTTCAGGAAGTGCATGGATTACGAATGCAGAATTGTGATTACTGTGTTAAAGTTCTTCAGTGTGTTTATGGTCAATTGAGAAAAAGTGTCCGTAGTAAACGTTTGTTAGGGAGCAAGTTGACGCACACATGTAAACGGTATCCTGAGGTATGTCTCTCAAAATTTGAAATTTCTGGTACAGTACCGGTCAAAAAAATATTGTAAAATGTATTTTTCATAGGGGTACGTACATACGTTGATTTTGTTGAATTTTTTTTCGAAATTTCTGGAATTTTTTCAAAACTTTAAACAAAAACGACCTATTTTTCGA</canonical>
            <polymorphic>CTTATGCACCAACCTAATACTTCCTTCAAAATTGCGTTTCTACTCTGAACCAATTATCATTCCGACCAGGAATTTCAGCTGAAAAATTGATTGCCATTTTTTTGTTTTTTTTAAATTTATTCTACGATCACTATTTCCAAAAAAAAATACCTCATTCCCATTTTGTTGACGCCAGAAATCTAAAAGTTTTTGATACTTTTTCCAAAGAATGCTCTTGGATCAGATCTGTTCTGTGAGTCATTCATTATTAGTTTTAGCTCCACTGATAATTATTAGTTTTAGCTCCACTGATAATAATTTTATTCAAAATGTTAATATTGTCATTGTTCCACATGAATATTATCATTGTTGCTACAATCCATCGCAAAAATCACCTTTTTCGCGAACAAAAAATCGCATAAAACTATTTTTTATGTTCCTCTTTTTGAAAGTTTTATGTTCAAATTTTAGTGTCGAAAAGTACCACACCGTTTGCCCCCACATGTCAATCGTACGTATGMCTTTTTCACTGTCGTATTAATATACATAAAACACTACTATTTATAAATGTCATTTCTGAAATTTACAGAAATCAAACCGGTTCCCCTTCTACTCTTTTCGCGATGAGGATCACTATCTTCTTGGTGTTCCTAATTTGTGGTGTTCTAATTCAGGTGTATGTATTTTCACACTTAGAAAAACGGTTTTTTTTTTCAGGAAGTGCATGGATTACGAATGCAGAATTGTGATTACTGTGTTAAAGTTCTTCAGTGTGTTTATGGTCAATTGAGAAAAAGTGTCCGTAGTAAACGTTTGTTAGGGAGCAAGTTGACGCACACATGTAAACGGTATCCTGAGGTATGTCTCTCAAAATTTGAAATTTCTGGTACAGTACCGGTCAAAAAAATATTGTAAAATGTATTTTTCATAGGGGTACGTACATACGTTGATTTTGTTGAATTTTTTTTCGAAATTTCTGGAATTTTTTCAAAACTTTAAACAAAAACGACCTATTTTTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCTCTTTTTGAAAGTTTTATG</pcr_primer_p1>
		<pcr_primer_p2>ACATACACCTGAATTAGAACACC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTCCTCTTTTTGAAAGTTTTATGTTCAAATTTTAGTGTCGAAAAGTACCACACCGTTTGCCCCCACATGTCAATCGTACGTATGCCTTTTTCACTGTCGTATTAATATACATAAAACACTACTATTTATAAATGTCATTTCTGAAATTTACAGAAATCAAACCGGTTCCCCTTCTACTCTTTTCGCGATGAGGATCACTATCTTCTTGGTGTTCCTAATTTGTGGTGTTCTAATTCAGGTGTATGT</canonical_amplicon>
		<polymorphic_amplicon>TTCCTCTTTTTGAAAGTTTTATGTTCAAATTTTAGTGTCGAAAAGTACCACACCGTTTGCCCCCACATGTCAATCGTACGTATGMCTTTTTCACTGTCGTATTAATATACATAAAACACTACTATTTATAAATGTCATTTCTGAAATTTACAGAAATCAAACCGGTTCCCCTTCTACTCTTTTCGCGATGAGGATCACTATCTTCTTGGTGTTCCTAATTTGTGGTGTTCTAATTCAGGTGTATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16678</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>100089</contig_pos>
        <strand>+</strand>
        <context>GTACGTATGM[C/T]TTTTTCACTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTCGAAAAGTACCACACCGTTTGCCCCCACATGTCAATCGTACGTATGC</left_flank>
        <right_flank>TTTTTCACTGTCGTATTAATATACATAAAACACTACTATTTATAAATGTC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATGCACCAACCTAATACTTCCTTCAAAATTGCGTTTCTACTCTGAACCAATTATCATTCCGACCAGGAATTTCAGCTGAAAAATTGATTGCCATTTTTTTGTTTTTTTTAAATTTATTCTACGATCACTATTTCCAAAAAAAAATACCTCATTCCCATTTTGTTGACGCCAGAAATCTAAAAGTTTTTGATACTTTTTCCAAAGAATGCTCTTGGATCAGATCTGTTCTGTGAGTCATTCATTATTAGTTTTAGCTCCACTGATAATTATTAGTTTTAGCTCCACTGATAATAATTTTATTCAAAATGTTAATATTGTCATTGTTCCACATGAATATTATCATTGTTGCTACAATCCATCGCAAAAATCACCTTTTTCGCGAACAAAAAATCGCATAAAACTATTTTTTATGTTCCTCTTTTTGAAAGTTTTATGTTCAAATTTTAGTGTCGAAAAGTACCACACCGTTTGCCCCCACATGTCAATCGTACGTATGCCTTTTTCACTGTCGTATTAATATACATAAAACACTACTATTTATAAATGTCATTTCTGAAATTTACAGAAATCAAACCGGTTCCCCTTCTACTCTTTTCGCGATGAGGATCACTATCTTCTTGGTGTTCCTAATTTGTGGTGTTCTAATTCAGGTGTATGTATTTTCACACTTAGAAAAACGGTTTTTTTTTTCAGGAAGTGCATGGATTACGAATGCAGAATTGTGATTACTGTGTTAAAGTTCTTCAGTGTGTTTATGGTCAATTGAGAAAAAGTGTCCGTAGTAAACGTTTGTTAGGGAGCAAGTTGACGCACACATGTAAACGGTATCCTGAGGTATGTCTCTCAAAATTTGAAATTTCTGGTACAGTACCGGTCAAAAAAATATTGTAAAATGTATTTTTCATAGGGGTACGTACATACGTTGATTTTGTTGAATTTTTTTTCGAAATTTCTGGAATTTTTTCAAAACTTTAAACAAAAACGACCTATTTTTCGAC</canonical>
            <polymorphic>TTATGCACCAACCTAATACTTCCTTCAAAATTGCGTTTCTACTCTGAACCAATTATCATTCCGACCAGGAATTTCAGCTGAAAAATTGATTGCCATTTTTTTGTTTTTTTTAAATTTATTCTACGATCACTATTTCCAAAAAAAAATACCTCATTCCCATTTTGTTGACGCCAGAAATCTAAAAGTTTTTGATACTTTTTCCAAAGAATGCTCTTGGATCAGATCTGTTCTGTGAGTCATTCATTATTAGTTTTAGCTCCACTGATAATTATTAGTTTTAGCTCCACTGATAATAATTTTATTCAAAATGTTAATATTGTCATTGTTCCACATGAATATTATCATTGTTGCTACAATCCATCGCAAAAATCACCTTTTTCGCGAACAAAAAATCGCATAAAACTATTTTTTATGTTCCTCTTTTTGAAAGTTTTATGTTCAAATTTTAGTGTCGAAAAGTACCACACCGTTTGCCCCCACATGTCAATCGTACGTATGCYTTTTTCACTGTCGTATTAATATACATAAAACACTACTATTTATAAATGTCATTTCTGAAATTTACAGAAATCAAACCGGTTCCCCTTCTACTCTTTTCGCGATGAGGATCACTATCTTCTTGGTGTTCCTAATTTGTGGTGTTCTAATTCAGGTGTATGTATTTTCACACTTAGAAAAACGGTTTTTTTTTTCAGGAAGTGCATGGATTACGAATGCAGAATTGTGATTACTGTGTTAAAGTTCTTCAGTGTGTTTATGGTCAATTGAGAAAAAGTGTCCGTAGTAAACGTTTGTTAGGGAGCAAGTTGACGCACACATGTAAACGGTATCCTGAGGTATGTCTCTCAAAATTTGAAATTTCTGGTACAGTACCGGTCAAAAAAATATTGTAAAATGTATTTTTCATAGGGGTACGTACATACGTTGATTTTGTTGAATTTTTTTTCGAAATTTCTGGAATTTTTTCAAAACTTTAAACAAAAACGACCTATTTTTCGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCTCTTTTTGAAAGTTTTATG</pcr_primer_p1>
		<pcr_primer_p2>ACATACACCTGAATTAGAACACC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTCCTCTTTTTGAAAGTTTTATGTTCAAATTTTAGTGTCGAAAAGTACCACACCGTTTGCCCCCACATGTCAATCGTACGTATGCCTTTTTCACTGTCGTATTAATATACATAAAACACTACTATTTATAAATGTCATTTCTGAAATTTACAGAAATCAAACCGGTTCCCCTTCTACTCTTTTCGCGATGAGGATCACTATCTTCTTGGTGTTCCTAATTTGTGGTGTTCTAATTCAGGTGTATGT</canonical_amplicon>
		<polymorphic_amplicon>TTCCTCTTTTTGAAAGTTTTATGTTCAAATTTTAGTGTCGAAAAGTACCACACCGTTTGCCCCCACATGTCAATCGTACGTATGCYTTTTTCACTGTCGTATTAATATACATAAAACACTACTATTTATAAATGTCATTTCTGAAATTTACAGAAATCAAACCGGTTCCCCTTCTACTCTTTTCGCGATGAGGATCACTATCTTCTTGGTGTTCCTAATTTGTGGTGTTCTAATTCAGGTGTATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16679</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>100134</contig_pos>
        <strand>+</strand>
        <context>ACTATTTATA[A/C]ATGTCATTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATGCCTTTTTCACTGTCGTATTAATATACATAAAACACTACTATTTATA</left_flank>
        <right_flank>ATGTCATTTCTGAAATTTACAGAAATCAAACCGGTTCCCCTTCTACTCTT</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACCAATTATCATTCCGACCAGGAATTTCAGCTGAAAAATTGATTGCCATTTTTTTGTTTTTTTTAAATTTATTCTACGATCACTATTTCCAAAAAAAAATACCTCATTCCCATTTTGTTGACGCCAGAAATCTAAAAGTTTTTGATACTTTTTCCAAAGAATGCTCTTGGATCAGATCTGTTCTGTGAGTCATTCATTATTAGTTTTAGCTCCACTGATAATTATTAGTTTTAGCTCCACTGATAATAATTTTATTCAAAATGTTAATATTGTCATTGTTCCACATGAATATTATCATTGTTGCTACAATCCATCGCAAAAATCACCTTTTTCGCGAACAAAAAATCGCATAAAACTATTTTTTATGTTCCTCTTTTTGAAAGTTTTATGTTCAAATTTTAGTGTCGAAAAGTACCACACCGTTTGCCCCCACATGTCAATCGTACGTATGCCTTTTTCACTGTCGTATTAATATACATAAAACACTACTATTTATAAATGTCATTTCTGAAATTTACAGAAATCAAACCGGTTCCCCTTCTACTCTTTTCGCGATGAGGATCACTATCTTCTTGGTGTTCCTAATTTGTGGTGTTCTAATTCAGGTGTATGTATTTTCACACTTAGAAAAACGGTTTTTTTTTTCAGGAAGTGCATGGATTACGAATGCAGAATTGTGATTACTGTGTTAAAGTTCTTCAGTGTGTTTATGGTCAATTGAGAAAAAGTGTCCGTAGTAAACGTTTGTTAGGGAGCAAGTTGACGCACACATGTAAACGGTATCCTGAGGTATGTCTCTCAAAATTTGAAATTTCTGGTACAGTACCGGTCAAAAAAATATTGTAAAATGTATTTTTCATAGGGGTACGTACATACGTTGATTTTGTTGAATTTTTTTTCGAAATTTCTGGAATTTTTTCAAAACTTTAAACAAAAACGACCTATTTTTCGACTACTTTCTACTTTGTTAATTATGTTAACTAATGTAACATTTTTTC</canonical>
            <polymorphic>GAACCAATTATCATTCCGACCAGGAATTTCAGCTGAAAAATTGATTGCCATTTTTTTGTTTTTTTTAAATTTATTCTACGATCACTATTTCCAAAAAAAAATACCTCATTCCCATTTTGTTGACGCCAGAAATCTAAAAGTTTTTGATACTTTTTCCAAAGAATGCTCTTGGATCAGATCTGTTCTGTGAGTCATTCATTATTAGTTTTAGCTCCACTGATAATTATTAGTTTTAGCTCCACTGATAATAATTTTATTCAAAATGTTAATATTGTCATTGTTCCACATGAATATTATCATTGTTGCTACAATCCATCGCAAAAATCACCTTTTTCGCGAACAAAAAATCGCATAAAACTATTTTTTATGTTCCTCTTTTTGAAAGTTTTATGTTCAAATTTTAGTGTCGAAAAGTACCACACCGTTTGCCCCCACATGTCAATCGTACGTATGCCTTTTTCACTGTCGTATTAATATACATAAAACACTACTATTTATAMATGTCATTTCTGAAATTTACAGAAATCAAACCGGTTCCCCTTCTACTCTTTTCGCGATGAGGATCACTATCTTCTTGGTGTTCCTAATTTGTGGTGTTCTAATTCAGGTGTATGTATTTTCACACTTAGAAAAACGGTTTTTTTTTTCAGGAAGTGCATGGATTACGAATGCAGAATTGTGATTACTGTGTTAAAGTTCTTCAGTGTGTTTATGGTCAATTGAGAAAAAGTGTCCGTAGTAAACGTTTGTTAGGGAGCAAGTTGACGCACACATGTAAACGGTATCCTGAGGTATGTCTCTCAAAATTTGAAATTTCTGGTACAGTACCGGTCAAAAAAATATTGTAAAATGTATTTTTCATAGGGGTACGTACATACGTTGATTTTGTTGAATTTTTTTTCGAAATTTCTGGAATTTTTTCAAAACTTTAAACAAAAACGACCTATTTTTCGACTACTTTCTACTTTGTTAATTATGTTAACTAATGTAACATTTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCTCTTTTTGAAAGTTTTATG</pcr_primer_p1>
		<pcr_primer_p2>ACATACACCTGAATTAGAACACC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTCCTCTTTTTGAAAGTTTTATGTTCAAATTTTAGTGTCGAAAAGTACCACACCGTTTGCCCCCACATGTCAATCGTACGTATGCCTTTTTCACTGTCGTATTAATATACATAAAACACTACTATTTATAAATGTCATTTCTGAAATTTACAGAAATCAAACCGGTTCCCCTTCTACTCTTTTCGCGATGAGGATCACTATCTTCTTGGTGTTCCTAATTTGTGGTGTTCTAATTCAGGTGTATGT</canonical_amplicon>
		<polymorphic_amplicon>TTCCTCTTTTTGAAAGTTTTATGTTCAAATTTTAGTGTCGAAAAGTACCACACCGTTTGCCCCCACATGTCAATCGTACGTATGCCTTTTTCACTGTCGTATTAATATACATAAAACACTACTATTTATAMATGTCATTTCTGAAATTTACAGAAATCAAACCGGTTCCCCTTCTACTCTTTTCGCGATGAGGATCACTATCTTCTTGGTGTTCCTAATTTGTGGTGTTCTAATTCAGGTGTATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16680</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>103662</contig_pos>
        <strand>+</strand>
        <context>TATTGTTCTT[C/T]TAATTGCATA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGATCATTTATGACAAGTCTCGTGTTCACTACATAGTTCCTATTGTTCTT</left_flank>
        <right_flank>TAATTGCATATTCTGTCCTTGGTGGCCTTATATTTTGGTCAATTGAACGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGCTTTCATGATTTTAAGCACATCGGAAGGTGGGCTTCTATTAGAGGTGGGCTTCAATTAAAGGTGGGCCTCTATTAGAGAAAATACGGTAATGGTGAACAACACATTAGTTGCCATCTTTTTTTTATATCCTTGACAGAAACCGAGAAAAATTGGTGTAAAATTAAAAGTTGGATGACTTCGTTGTTACATACTTTTGGGTACTCAATGAAAATGATGATTTTTGTATTTTCCCCGAAACTTCTATTTTAAAATTCTGATTACGAAATTAATCTTATTCAGCATCTTCTGCTCCATGAGAGCATTTGGAGTCATGCTTTCAAAAAGAAGAGGAAGCGTGCATCCAGCAAAAACCGCCCCTCCAAATTGAAACGATTTGTGTCACTTCTCCAGGTAATCCAAAATTTCAGCAGTTTTAAAACACTCTTATTTTCCAAAGCCTTTTCAGATCATTTATGACAAGTCTCGTGTTCACTACATAGTTCCTATTGTTCTTTTAATTGCATATTCTGTCCTTGGTGGCCTTATATTTTGGTCAATTGAACGACCGAATGAAGAAATAATGTTAGCTGATAAGGTGATAAGGCATCTGAAATGATAAATAACAAGAAAGATGATTTCAGAGGAATTACATCGCAGCGTTGACAGATGATTTGGTGGAAGTTCTCCTGCAGATTCATAACCGGTTGATTGATTTCAACAGGGCGTATGCCAATAACACATACTTGTTGATGTTACACTATCGAGGGTATCGGAAGTTTGCCTTGAATCAGATTCACAAAGTTTGCCAGGGTTTCAAGAATCCCAAAAATTTGTTTTTAAATTTTAGAGTGTCTACTGGTACACCCTCTCTACATTCTATCTGACAGAGCACGAAATGCACAAAGTTGTAGCTCTCCGTCCGAAAAATCCTGAGCAATTGTGGAAAAGGCATTTTGAGAGCAATTTCGGGAGAATAAGAGCTCTGAAAAATTATACAGAGCAGGTATAAAACAAG</canonical>
            <polymorphic>TTCTGCTTTCATGATTTTAAGCACATCGGAAGGTGGGCTTCTATTAGAGGTGGGCTTCAATTAAAGGTGGGCCTCTATTAGAGAAAATACGGTAATGGTGAACAACACATTAGTTGCCATCTTTTTTTTATATCCTTGACAGAAACCGAGAAAAATTGGTGTAAAATTAAAAGTTGGATGACTTCGTTGTTACATACTTTTGGGTACTCAATGAAAATGATGATTTTTGTATTTTCCCCGAAACTTCTATTTTAAAATTCTGATTACGAAATTAATCTTATTCAGCATCTTCTGCTCCATGAGAGCATTTGGAGTCATGCTTTCAAAAAGAAGAGGAAGCGTGCATCCAGCAAAAACCGCCCCTCCAAATTGAAACGATTTGTGTCACTTCTCCAGGTAATCCAAAATTTCAGCAGTTTTAAAACACTCTTATTTTCCAAAGCCTTTTCAGATCATTTATGACAAGTCTCGTGTTCACTACATAGTTCCTATTGTTCTTYTAATTGCATATTCTGTCCTTGGTGGCCTTATATTTTGGTCAATTGAACGACCGAATGAAGAAATAATGTTAGCTGATAAGGTGATAAGGCATCTGAAATGATAAATAACAAGAAAGATGATTTCAGAGGAATTACATCGCAGCGTTGACAGATGATTTGGTGGAAGTTCTCCTGCAGATTCATAACCGGTTGATTGATTTCAACAGGGCGTATGCCAATAACACATACTTGTTGATGTTACACTATCGAGGGTATCGGAAGTTTGCCTTGAATCAGATTCACAAAGTTTGCCAGGGTTTCAAGAATCCCAAAAATTTGTTTTTAAATTTTAGAGTGTCTACTGGTACACCCTCTCTACATTCTATCTGACAGAGCACGAAATGCACAAAGTTGTAGCTCTCCGTCCGAAAAATCCTGAGCAATTGTGGAAAAGGCATTTTGAGAGCAATTTCGGGAGAATAAGAGCTCTGAAAAATTATACAGAGCAGGTATAAAACAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>322 178 147 106 85 81 44 20 17</canonical_bands>
                <polymorphic_bands>403 178 147 106 85 44 20 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTCTCCAGGTAATCCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGTAATTCCTCTGAAATCATCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTCTCCAGGTAATCCAAAATTTCAGCAGTTTTAAAACACTCTTATTTTCCAAAGCCTTTTCAGATCATTTATGACAAGTCTCGTGTTCACTACATAGTTCCTATTGTTCTTTTAATTGCATATTCTGTCCTTGGTGGCCTTATATTTTGGTCAATTGAACGACCGAATGAAGAAATAATGTTAGCTGATAAGGTGATAAGGCATCTGAAATGATAAATAACAAGAAAGATGATTTCAGAGGAATTACA</canonical_amplicon>
		<polymorphic_amplicon>ACTTCTCCAGGTAATCCAAAATTTCAGCAGTTTTAAAACACTCTTATTTTCCAAAGCCTTTTCAGATCATTTATGACAAGTCTCGTGTTCACTACATAGTTCCTATTGTTCTTYTAATTGCATATTCTGTCCTTGGTGGCCTTATATTTTGGTCAATTGAACGACCGAATGAAGAAATAATGTTAGCTGATAAGGTGATAAGGCATCTGAAATGATAAATAACAAGAAAGATGATTTCAGAGGAATTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16682</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>133780</contig_pos>
        <strand>+</strand>
        <context>GTTTAATAAA[A/G]ACCACTCTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAGAAACTCTTTTGAGCTCTTCATTTTCTCATTTCCCCGTTTAATAAA</left_flank>
        <right_flank>ACCACTCTTTCTCACCGTTTTCCCCCACCCAAATGAATTTTCTTTCTCTC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAACTGCGTCCGCCTCGGGCTCGCACTCAATTACTCGGTCTTCTTCTATGAAGTAGCCTCCAGTCCCGATAGAGCGTGTCAGCTCTCCAAGCAGGTGCCCGTCTAAGAGTTTCTATAAATAGCACAAGGCGAAATTGACTTAATATTCATGGTTTCCTTTCCAGGCCTTCGATGACGCCATCGCTGAGCTCGACACTCTCAACGAGGACTCCTACAAGGACTCGACACTCATCATGCAGCTTCTCCGTGACAACCTCACTCTCTGGACCTCGGACGCTGCTACCGATGATACCGATGCCAACGAGCAAGAAGGAGGAAACTAGATAATTGCTCTTCTTTCTCTCCACCAATCTCCACTCTCGCCTCAATCACCCCCACTCCCAATCCGATCTGAAACATGATAAATAATATTATTTGTCATATATTTATTAATACTGTCTAGTTAAAGAAAAGAAACTCTTTTGAGCTCTTCATTTTCTCATTTCCCCGTTTAATAAAAACCACTCTTTCTCACCGTTTTCCCCCACCCAAATGAATTTTCTTTCTCTCTCTCTCTCTCTCTCTCTGTAATAATCTCTCTTAAAATGCATCAACTTGCACCCCCCGCCCCGACAAAAAAAATTAAATTTTCCGTTGTATTACGGCGTTCCTTTCCCCTCTCAATCTCGACATTCGAACAGACCCCCAAGCTTTTTGAGACACATAATAAAGTACTATGTTATCATTCTGTGTCCAGGTTGATATTCAGAGGTGCTGGAGCCTAAAAATGTTGTTCAATGGTCTCGATATTACAGTTTACAACTTACAGAAAACCTTTAAAAAGGTTTTCAGATAATCAAGGAGTGAATTAAGCAGAGGAAGACATCGACACAGGATTACATAGAAGAATAAGCTCTAGAAGACCAAAAGCTGAAACTCAGAGAATTTTCGCTGTGAAAATCCGTTAAAATCCTATAAAAAGATATTTAAAAACATTTTGTCGTCTCAAACGTAAGCCCA</canonical>
            <polymorphic>CAAACTGCGTCCGCCTCGGGCTCGCACTCAATTACTCGGTCTTCTTCTATGAAGTAGCCTCCAGTCCCGATAGAGCGTGTCAGCTCTCCAAGCAGGTGCCCGTCTAAGAGTTTCTATAAATAGCACAAGGCGAAATTGACTTAATATTCATGGTTTCCTTTCCAGGCCTTCGATGACGCCATCGCTGAGCTCGACACTCTCAACGAGGACTCCTACAAGGACTCGACACTCATCATGCAGCTTCTCCGTGACAACCTCACTCTCTGGACCTCGGACGCTGCTACCGATGATACCGATGCCAACGAGCAAGAAGGAGGAAACTAGATAATTGCTCTTCTTTCTCTCCACCAATCTCCACTCTCGCCTCAATCACCCCCACTCCCAATCCGATCTGAAACATGATAAATAATATTATTTGTCATATATTTATTAATACTGTCTAGTTAAAGAAAAGAAACTCTTTTGAGCTCTTCATTTTCTCATTTCCCCGTTTAATAAARACCACTCTTTCTCACCGTTTTCCCCCACCCAAATGAATTTTCTTTCTCTCTCTCTCTCTCTCTCTCTGTAATAATCTCTCTTAAAATGCATCAACTTGCACCCCCCGCCCCGACAAAAAAAATTAAATTTTCCGTTGTATTACGGCGTTCCTTTCCCCTCTCAATCTCGACATTCGAACAGACCCCCAAGCTTTTTGAGACACATAATAAAGTACTATGTTATCATTCTGTGTCCAGGTTGATATTCAGAGGTGCTGGAGCCTAAAAATGTTGTTCAATGGTCTCGATATTACAGTTTACAACTTACAGAAAACCTTTAAAAAGGTTTTCAGATAATCAAGGAGTGAATTAAGCAGAGGAAGACATCGACACAGGATTACATAGAAGAATAAGCTCTAGAAGACCAAAAGCTGAAACTCAGAGAATTTTCGCTGTGAAAATCCGTTAAAATCCTATAAAAAGATATTTAAAAACATTTTGTCGTCTCAAACGTAAGCCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGATCTGAAACATGATAAATAA</pcr_primer_p1>
		<pcr_primer_p2>AAGTTGATGCATTTTAAGAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>211</pcr_amplicon_size>
		<canonical_amplicon>CCGATCTGAAACATGATAAATAATATTATTTGTCATATATTTATTAATACTGTCTAGTTAAAGAAAAGAAACTCTTTTGAGCTCTTCATTTTCTCATTTCCCCGTTTAATAAAAACCACTCTTTCTCACCGTTTTCCCCCACCCAAATGAATTTTCTTTCTCTCTCTCTCTCTCTCTCTCTGTAATAATCTCTCTTAAAATGCATCAACTT</canonical_amplicon>
		<polymorphic_amplicon>CCGATCTGAAACATGATAAATAATATTATTTGTCATATATTTATTAATACTGTCTAGTTAAAGAAAAGAAACTCTTTTGAGCTCTTCATTTTCTCATTTCCCCGTTTAATAAARACCACTCTTTCTCACCGTTTTCCCCCACCCAAATGAATTTTCTTTCTCTCTCTCTCTCTCTCTCTCTGTAATAATCTCTCTTAAAATGCATCAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16683</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>133804</contig_pos>
        <strand>+</strand>
        <context>ACCGTTTTCC[C/T]CCACCCAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTCTCATTTCCCCGTTTAATAAAAACCACTCTTTCTCACCGTTTTCC</left_flank>
        <right_flank>CCACCCAAATGAATTTTCTTTCTCTCTCTCTCTCTCTCTCTCTGTAATAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTCAATTACTCGGTCTTCTTCTATGAAGTAGCCTCCAGTCCCGATAGAGCGTGTCAGCTCTCCAAGCAGGTGCCCGTCTAAGAGTTTCTATAAATAGCACAAGGCGAAATTGACTTAATATTCATGGTTTCCTTTCCAGGCCTTCGATGACGCCATCGCTGAGCTCGACACTCTCAACGAGGACTCCTACAAGGACTCGACACTCATCATGCAGCTTCTCCGTGACAACCTCACTCTCTGGACCTCGGACGCTGCTACCGATGATACCGATGCCAACGAGCAAGAAGGAGGAAACTAGATAATTGCTCTTCTTTCTCTCCACCAATCTCCACTCTCGCCTCAATCACCCCCACTCCCAATCCGATCTGAAACATGATAAATAATATTATTTGTCATATATTTATTAATACTGTCTAGTTAAAGAAAAGAAACTCTTTTGAGCTCTTCATTTTCTCATTTCCCCGTTTAATAAAAACCACTCTTTCTCACCGTTTTCCCCCACCCAAATGAATTTTCTTTCTCTCTCTCTCTCTCTCTCTCTGTAATAATCTCTCTTAAAATGCATCAACTTGCACCCCCCGCCCCGACAAAAAAAATTAAATTTTCCGTTGTATTACGGCGTTCCTTTCCCCTCTCAATCTCGACATTCGAACAGACCCCCAAGCTTTTTGAGACACATAATAAAGTACTATGTTATCATTCTGTGTCCAGGTTGATATTCAGAGGTGCTGGAGCCTAAAAATGTTGTTCAATGGTCTCGATATTACAGTTTACAACTTACAGAAAACCTTTAAAAAGGTTTTCAGATAATCAAGGAGTGAATTAAGCAGAGGAAGACATCGACACAGGATTACATAGAAGAATAAGCTCTAGAAGACCAAAAGCTGAAACTCAGAGAATTTTCGCTGTGAAAATCCGTTAAAATCCTATAAAAAGATATTTAAAAACATTTTGTCGTCTCAAACGTAAGCCCACATATTATCCAAAGCGGTTAACCT</canonical>
            <polymorphic>CACTCAATTACTCGGTCTTCTTCTATGAAGTAGCCTCCAGTCCCGATAGAGCGTGTCAGCTCTCCAAGCAGGTGCCCGTCTAAGAGTTTCTATAAATAGCACAAGGCGAAATTGACTTAATATTCATGGTTTCCTTTCCAGGCCTTCGATGACGCCATCGCTGAGCTCGACACTCTCAACGAGGACTCCTACAAGGACTCGACACTCATCATGCAGCTTCTCCGTGACAACCTCACTCTCTGGACCTCGGACGCTGCTACCGATGATACCGATGCCAACGAGCAAGAAGGAGGAAACTAGATAATTGCTCTTCTTTCTCTCCACCAATCTCCACTCTCGCCTCAATCACCCCCACTCCCAATCCGATCTGAAACATGATAAATAATATTATTTGTCATATATTTATTAATACTGTCTAGTTAAAGAAAAGAAACTCTTTTGAGCTCTTCATTTTCTCATTTCCCCGTTTAATAAAAACCACTCTTTCTCACCGTTTTCCYCCACCCAAATGAATTTTCTTTCTCTCTCTCTCTCTCTCTCTCTGTAATAATCTCTCTTAAAATGCATCAACTTGCACCCCCCGCCCCGACAAAAAAAATTAAATTTTCCGTTGTATTACGGCGTTCCTTTCCCCTCTCAATCTCGACATTCGAACAGACCCCCAAGCTTTTTGAGACACATAATAAAGTACTATGTTATCATTCTGTGTCCAGGTTGATATTCAGAGGTGCTGGAGCCTAAAAATGTTGTTCAATGGTCTCGATATTACAGTTTACAACTTACAGAAAACCTTTAAAAAGGTTTTCAGATAATCAAGGAGTGAATTAAGCAGAGGAAGACATCGACACAGGATTACATAGAAGAATAAGCTCTAGAAGACCAAAAGCTGAAACTCAGAGAATTTTCGCTGTGAAAATCCGTTAAAATCCTATAAAAAGATATTTAAAAACATTTTGTCGTCTCAAACGTAAGCCCACATATTATCCAAAGCGGTTAACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGATCTGAAACATGATAAATAA</pcr_primer_p1>
		<pcr_primer_p2>AAGTTGATGCATTTTAAGAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>211</pcr_amplicon_size>
		<canonical_amplicon>CCGATCTGAAACATGATAAATAATATTATTTGTCATATATTTATTAATACTGTCTAGTTAAAGAAAAGAAACTCTTTTGAGCTCTTCATTTTCTCATTTCCCCGTTTAATAAAAACCACTCTTTCTCACCGTTTTCCCCCACCCAAATGAATTTTCTTTCTCTCTCTCTCTCTCTCTCTCTGTAATAATCTCTCTTAAAATGCATCAACTT</canonical_amplicon>
		<polymorphic_amplicon>CCGATCTGAAACATGATAAATAATATTATTTGTCATATATTTATTAATACTGTCTAGTTAAAGAAAAGAAACTCTTTTGAGCTCTTCATTTTCTCATTTCCCCGTTTAATAAAAACCACTCTTTCTCACCGTTTTCCYCCACCCAAATGAATTTTCTTTCTCTCTCTCTCTCTCTCTCTCTGTAATAATCTCTCTTAAAATGCATCAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16697</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>135152</contig_pos>
        <strand>+</strand>
        <context>AATGCTGATT[C/T]TGGTCCTGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTACTCAACAACAGGTATCGAAGCATTTCAAGCTGCTCACAATGCTGATT</left_flank>
        <right_flank>TGGTCCTGAGACACGTTTGTCAAGAGAATATACACCTGTTTCAAAAAGTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTTTCCGAAGCTACATCTGTTCTGAAACTCACCACTAGTTCATTACCTACGTCTGTTAAGGCAAGTTTCCCACTTCTGACGATAATAATCAAAATTCCAAGTTCGCAGGCAGTTTTCACTTCAGAAGCACTACTTCCATCAGCCAGCAATAGCTGTATTATCCGATGGAGCGTGTGAAGACAATACAACGCTTTGAAAATCGAAAATAATAAAGTGTTTAAAAAACACTATGTTGAAAGCCAAAAACCGTGTCATAACACAGAATTTATAGCAAATCAATCAATTTTCGGGTAGTTCTGGGCCCCAATGATCAACGTATTCTCCAAGGTACAGACTAATCCATGACGTGTTTCGAAGAAGATAATTTATGGATTTTCTTCCCAGTTCACTAAGTTTTTCTCTGTTTTCAGACTTCTCAATAGACATATCGTACCTTATTGCAAATCGGTACTCAACAACAGGTATCGAAGCATTTCAAGCTGCTCACAATGCTGATTTTGGTCCTGAGACACGTTTGTCAAGAGAATATACACCTGTTTCAAAAAGTCTTGCTTTAATCAAACCACATTCCTGAAGTGGAATTGTTTTTGCTGAAACCTTCCGAGTAGTTTCGTGCAACTCTCTCTGGTTATTGCAACGCCTCGATTGCGAATATCAAAAGATAGTATTGAAATTTAAAAAATGATTGGAACAATGACAAAAAAGCGCATTTTGAATATTTCAGTTTTTCTCGTTTCTGAAAATACAATTTCCGCGCTCTACAATTAAATGTCGAATGAAATTTAGTAGCGCGCGTTTGAAATACGACTGGCGCGGATGTTGCGAAATTCAAATGAATCAGATTCTGGACAAATAATATCGAAAAAGAAATGCAGTAGCGATTAAAGAACGATAGAAAACCGAATTTCGGAGTTTGGTTGAAGGAAGAAGAATCCTGAAAATTTGTAGGGCACAAAAATATTATTTTCTGAGATTCTGAAAATACTGAATTCGCTCAA</canonical>
            <polymorphic>CAGTTTCCGAAGCTACATCTGTTCTGAAACTCACCACTAGTTCATTACCTACGTCTGTTAAGGCAAGTTTCCCACTTCTGACGATAATAATCAAAATTCCAAGTTCGCAGGCAGTTTTCACTTCAGAAGCACTACTTCCATCAGCCAGCAATAGCTGTATTATCCGATGGAGCGTGTGAAGACAATACAACGCTTTGAAAATCGAAAATAATAAAGTGTTTAAAAAACACTATGTTGAAAGCCAAAAACCGTGTCATAACACAGAATTTATAGCAAATCAATCAATTTTCGGGTAGTTCTGGGCCCCAATGATCAACGTATTCTCCAAGGTACAGACTAATCCATGACGTGTTTCGAAGAAGATAATTTATGGATTTTCTTCCCAGTTCACTAAGTTTTTCTCTGTTTTCAGACTTCTCAATAGACATATCGTACCTTATTGCAAATCGGTACTCAACAACAGGTATCGAAGCATTTCAAGCTGCTCACAATGCTGATTYTGGTCCTGAGACACGTTTGTCAAGAGAATATACACCTGTTTCAAAAAGTCTTGCTTTAATCAAACCACATTCCTGAAGTGGAATTGTTTTTGCTGAAACCTTCCGAGTAGTTTCGTGCAACTCTCTCTGGTTATTGCAACGCCTCGATTGCGAATATCAAAAGATAGTATTGAAATTTAAAAAATGATTGGAACAATGACAAAAAAGCGCATTTTGAATATTTCAGTTTTTCTCGTTTCTGAAAATACAATTTCCGCGCTCTACAATTAAATGTCGAATGAAATTTAGTAGCGCGCGTTTGAAATACGACTGGCGCGGATGTTGCGAAATTCAAATGAATCAGATTCTGGACAAATAATATCGAAAAAGAAATGCAGTAGCGATTAAAGAACGATAGAAAACCGAATTTCGGAGTTTGGTTGAAGGAAGAAGAATCCTGAAAATTTGTAGGGCACAAAAATATTATTTTCTGAGATTCTGAAAATACTGAATTCGCTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTATTCTCCAAGGTACAGACTA</pcr_primer_p1>
		<pcr_primer_p2>GGTTTGATTAAAGCAAGACTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTATTCTCCAAGGTACAGACTAATCCATGACGTGTTTCGAAGAAGATAATTTATGGATTTTCTTCCCAGTTCACTAAGTTTTTCTCTGTTTTCAGACTTCTCAATAGACATATCGTACCTTATTGCAAATCGGTACTCAACAACAGGTATCGAAGCATTTCAAGCTGCTCACAATGCTGATTTTGGTCCTGAGACACGTTTGTCAAGAGAATATACACCTGTTTCAAAAAGTCTTGCTTTAATCAAACC</canonical_amplicon>
		<polymorphic_amplicon>CGTATTCTCCAAGGTACAGACTAATCCATGACGTGTTTCGAAGAAGATAATTTATGGATTTTCTTCCCAGTTCACTAAGTTTTTCTCTGTTTTCAGACTTCTCAATAGACATATCGTACCTTATTGCAAATCGGTACTCAACAACAGGTATCGAAGCATTTCAAGCTGCTCACAATGCTGATTYTGGTCCTGAGACACGTTTGTCAAGAGAATATACACCTGTTTCAAAAAGTCTTGCTTTAATCAAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16698</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>135079</contig_pos>
        <strand>+</strand>
        <context>CTCAATAGAC[A/T]TATCGTACCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCTTCCCAGTTCACTAAGTTTTTCTCTGTTTTCAGACTTCTCAATAGAC</left_flank>
        <right_flank>TATCGTACCTTATTGCAAATCGGTACTCAACAACAGGTATCGAAGCATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCGCTTTATTTCCTGACTAAGACTGGATTTGAACGGAAGATTTCGAATCAATGTGTATCTGGGCGTAGTGTCAGTTTCCGAAGCTACATCTGTTCTGAAACTCACCACTAGTTCATTACCTACGTCTGTTAAGGCAAGTTTCCCACTTCTGACGATAATAATCAAAATTCCAAGTTCGCAGGCAGTTTTCACTTCAGAAGCACTACTTCCATCAGCCAGCAATAGCTGTATTATCCGATGGAGCGTGTGAAGACAATACAACGCTTTGAAAATCGAAAATAATAAAGTGTTTAAAAAACACTATGTTGAAAGCCAAAAACCGTGTCATAACACAGAATTTATAGCAAATCAATCAATTTTCGGGTAGTTCTGGGCCCCAATGATCAACGTATTCTCCAAGGTACAGACTAATCCATGACGTGTTTCGAAGAAGATAATTTATGGATTTTCTTCCCAGTTCACTAAGTTTTTCTCTGTTTTCAGACTTCTCAATAGACATATCGTACCTTATTGCAAATCGGTACTCAACAACAGGTATCGAAGCATTTCAAGCTGCTCACAATGCTGATTTTGGTCCTGAGACACGTTTGTCAAGAGAATATACACCTGTTTCAAAAAGTCTTGCTTTAATCAAACCACATTCCTGAAGTGGAATTGTTTTTGCTGAAACCTTCCGAGTAGTTTCGTGCAACTCTCTCTGGTTATTGCAACGCCTCGATTGCGAATATCAAAAGATAGTATTGAAATTTAAAAAATGATTGGAACAATGACAAAAAAGCGCATTTTGAATATTTCAGTTTTTCTCGTTTCTGAAAATACAATTTCCGCGCTCTACAATTAAATGTCGAATGAAATTTAGTAGCGCGCGTTTGAAATACGACTGGCGCGGATGTTGCGAAATTCAAATGAATCAGATTCTGGACAAATAATATCGAAAAAGAAATGCAGTAGCGATTAAAGAACGATAGAAAACCGAATTTCGGAGTTTGGTTGAAGGA</canonical>
            <polymorphic>AATCGCTTTATTTCCTGACTAAGACTGGATTTGAACGGAAGATTTCGAATCAATGTGTATCTGGGCGTAGTGTCAGTTTCCGAAGCTACATCTGTTCTGAAACTCACCACTAGTTCATTACCTACGTCTGTTAAGGCAAGTTTCCCACTTCTGACGATAATAATCAAAATTCCAAGTTCGCAGGCAGTTTTCACTTCAGAAGCACTACTTCCATCAGCCAGCAATAGCTGTATTATCCGATGGAGCGTGTGAAGACAATACAACGCTTTGAAAATCGAAAATAATAAAGTGTTTAAAAAACACTATGTTGAAAGCCAAAAACCGTGTCATAACACAGAATTTATAGCAAATCAATCAATTTTCGGGTAGTTCTGGGCCCCAATGATCAACGTATTCTCCAAGGTACAGACTAATCCATGACGTGTTTCGAAGAAGATAATTTATGGATTTTCTTCCCAGTTCACTAAGTTTTTCTCTGTTTTCAGACTTCTCAATAGACWTATCGTACCTTATTGCAAATCGGTACTCAACAACAGGTATCGAAGCATTTCAAGCTGCTCACAATGCTGATTTTGGTCCTGAGACACGTTTGTCAAGAGAATATACACCTGTTTCAAAAAGTCTTGCTTTAATCAAACCACATTCCTGAAGTGGAATTGTTTTTGCTGAAACCTTCCGAGTAGTTTCGTGCAACTCTCTCTGGTTATTGCAACGCCTCGATTGCGAATATCAAAAGATAGTATTGAAATTTAAAAAATGATTGGAACAATGACAAAAAAGCGCATTTTGAATATTTCAGTTTTTCTCGTTTCTGAAAATACAATTTCCGCGCTCTACAATTAAATGTCGAATGAAATTTAGTAGCGCGCGTTTGAAATACGACTGGCGCGGATGTTGCGAAATTCAAATGAATCAGATTCTGGACAAATAATATCGAAAAAGAAATGCAGTAGCGATTAAAGAACGATAGAAAACCGAATTTCGGAGTTTGGTTGAAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTATTCTCCAAGGTACAGACTA</pcr_primer_p1>
		<pcr_primer_p2>GGTTTGATTAAAGCAAGACTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTATTCTCCAAGGTACAGACTAATCCATGACGTGTTTCGAAGAAGATAATTTATGGATTTTCTTCCCAGTTCACTAAGTTTTTCTCTGTTTTCAGACTTCTCAATAGACATATCGTACCTTATTGCAAATCGGTACTCAACAACAGGTATCGAAGCATTTCAAGCTGCTCACAATGCTGATTTTGGTCCTGAGACACGTTTGTCAAGAGAATATACACCTGTTTCAAAAAGTCTTGCTTTAATCAAACC</canonical_amplicon>
		<polymorphic_amplicon>CGTATTCTCCAAGGTACAGACTAATCCATGACGTGTTTCGAAGAAGATAATTTATGGATTTTCTTCCCAGTTCACTAAGTTTTTCTCTGTTTTCAGACTTCTCAATAGACWTATCGTACCTTATTGCAAATCGGTACTCAACAACAGGTATCGAAGCATTTCAAGCTGCTCACAATGCTGATTTTGGTCCTGAGACACGTTTGTCAAGAGAATATACACCTGTTTCAAAAAGTCTTGCTTTAATCAAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16699</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>135056</contig_pos>
        <strand>+</strand>
        <context>AGTTTTTCTC[A/T]GTTTTCAGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGAAGAAGATAATTTATGGATTTTCTTCCCAGTTCACTAAGTTTTTCTC</left_flank>
        <right_flank>GTTTTCAGACTTCTCAATAGACATATCGTACCTTATTGCAAATCGGTACT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCGGAACAGAAGAATCCAACGAAATCGCTTTATTTCCTGACTAAGACTGGATTTGAACGGAAGATTTCGAATCAATGTGTATCTGGGCGTAGTGTCAGTTTCCGAAGCTACATCTGTTCTGAAACTCACCACTAGTTCATTACCTACGTCTGTTAAGGCAAGTTTCCCACTTCTGACGATAATAATCAAAATTCCAAGTTCGCAGGCAGTTTTCACTTCAGAAGCACTACTTCCATCAGCCAGCAATAGCTGTATTATCCGATGGAGCGTGTGAAGACAATACAACGCTTTGAAAATCGAAAATAATAAAGTGTTTAAAAAACACTATGTTGAAAGCCAAAAACCGTGTCATAACACAGAATTTATAGCAAATCAATCAATTTTCGGGTAGTTCTGGGCCCCAATGATCAACGTATTCTCCAAGGTACAGACTAATCCATGACGTGTTTCGAAGAAGATAATTTATGGATTTTCTTCCCAGTTCACTAAGTTTTTCTCTGTTTTCAGACTTCTCAATAGACATATCGTACCTTATTGCAAATCGGTACTCAACAACAGGTATCGAAGCATTTCAAGCTGCTCACAATGCTGATTTTGGTCCTGAGACACGTTTGTCAAGAGAATATACACCTGTTTCAAAAAGTCTTGCTTTAATCAAACCACATTCCTGAAGTGGAATTGTTTTTGCTGAAACCTTCCGAGTAGTTTCGTGCAACTCTCTCTGGTTATTGCAACGCCTCGATTGCGAATATCAAAAGATAGTATTGAAATTTAAAAAATGATTGGAACAATGACAAAAAAGCGCATTTTGAATATTTCAGTTTTTCTCGTTTCTGAAAATACAATTTCCGCGCTCTACAATTAAATGTCGAATGAAATTTAGTAGCGCGCGTTTGAAATACGACTGGCGCGGATGTTGCGAAATTCAAATGAATCAGATTCTGGACAAATAATATCGAAAAAGAAATGCAGTAGCGATTAAAGAACGATAGAAAACCG</canonical>
            <polymorphic>ACCGGAACAGAAGAATCCAACGAAATCGCTTTATTTCCTGACTAAGACTGGATTTGAACGGAAGATTTCGAATCAATGTGTATCTGGGCGTAGTGTCAGTTTCCGAAGCTACATCTGTTCTGAAACTCACCACTAGTTCATTACCTACGTCTGTTAAGGCAAGTTTCCCACTTCTGACGATAATAATCAAAATTCCAAGTTCGCAGGCAGTTTTCACTTCAGAAGCACTACTTCCATCAGCCAGCAATAGCTGTATTATCCGATGGAGCGTGTGAAGACAATACAACGCTTTGAAAATCGAAAATAATAAAGTGTTTAAAAAACACTATGTTGAAAGCCAAAAACCGTGTCATAACACAGAATTTATAGCAAATCAATCAATTTTCGGGTAGTTCTGGGCCCCAATGATCAACGTATTCTCCAAGGTACAGACTAATCCATGACGTGTTTCGAAGAAGATAATTTATGGATTTTCTTCCCAGTTCACTAAGTTTTTCTCWGTTTTCAGACTTCTCAATAGACATATCGTACCTTATTGCAAATCGGTACTCAACAACAGGTATCGAAGCATTTCAAGCTGCTCACAATGCTGATTTTGGTCCTGAGACACGTTTGTCAAGAGAATATACACCTGTTTCAAAAAGTCTTGCTTTAATCAAACCACATTCCTGAAGTGGAATTGTTTTTGCTGAAACCTTCCGAGTAGTTTCGTGCAACTCTCTCTGGTTATTGCAACGCCTCGATTGCGAATATCAAAAGATAGTATTGAAATTTAAAAAATGATTGGAACAATGACAAAAAAGCGCATTTTGAATATTTCAGTTTTTCTCGTTTCTGAAAATACAATTTCCGCGCTCTACAATTAAATGTCGAATGAAATTTAGTAGCGCGCGTTTGAAATACGACTGGCGCGGATGTTGCGAAATTCAAATGAATCAGATTCTGGACAAATAATATCGAAAAAGAAATGCAGTAGCGATTAAAGAACGATAGAAAACCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTATTCTCCAAGGTACAGACTA</pcr_primer_p1>
		<pcr_primer_p2>GGTTTGATTAAAGCAAGACTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTATTCTCCAAGGTACAGACTAATCCATGACGTGTTTCGAAGAAGATAATTTATGGATTTTCTTCCCAGTTCACTAAGTTTTTCTCTGTTTTCAGACTTCTCAATAGACATATCGTACCTTATTGCAAATCGGTACTCAACAACAGGTATCGAAGCATTTCAAGCTGCTCACAATGCTGATTTTGGTCCTGAGACACGTTTGTCAAGAGAATATACACCTGTTTCAAAAAGTCTTGCTTTAATCAAACC</canonical_amplicon>
		<polymorphic_amplicon>CGTATTCTCCAAGGTACAGACTAATCCATGACGTGTTTCGAAGAAGATAATTTATGGATTTTCTTCCCAGTTCACTAAGTTTTTCTCWGTTTTCAGACTTCTCAATAGACATATCGTACCTTATTGCAAATCGGTACTCAACAACAGGTATCGAAGCATTTCAAGCTGCTCACAATGCTGATTTTGGTCCTGAGACACGTTTGTCAAGAGAATATACACCTGTTTCAAAAAGTCTTGCTTTAATCAAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16700</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>134923</contig_pos>
        <strand>+</strand>
        <context>ACAGAATTTA[A/T]AGCAAATCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAAAAACACTATGTTGAAAGCCAAAAACCGTGTCATAACACAGAATTTA</left_flank>
        <right_flank>AGCAAATCAATCAATTTTCGGGTAGTTCTGGGCCCCAATGATCAACGTAT</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATGAAATAATAAACGTTTTTGAGAGAGAAAAAAACGGAAATGATAATAGGAAACAATAAAAAGAACGGTCCTAAAATAGCTAAAGTATGAAAAATCTAAACCAAGCTGTCTTGTTGAATGGCTGAAACTCCACCGGAACAGAAGAATCCAACGAAATCGCTTTATTTCCTGACTAAGACTGGATTTGAACGGAAGATTTCGAATCAATGTGTATCTGGGCGTAGTGTCAGTTTCCGAAGCTACATCTGTTCTGAAACTCACCACTAGTTCATTACCTACGTCTGTTAAGGCAAGTTTCCCACTTCTGACGATAATAATCAAAATTCCAAGTTCGCAGGCAGTTTTCACTTCAGAAGCACTACTTCCATCAGCCAGCAATAGCTGTATTATCCGATGGAGCGTGTGAAGACAATACAACGCTTTGAAAATCGAAAATAATAAAGTGTTTAAAAAACACTATGTTGAAAGCCAAAAACCGTGTCATAACACAGAATTTATAGCAAATCAATCAATTTTCGGGTAGTTCTGGGCCCCAATGATCAACGTATTCTCCAAGGTACAGACTAATCCATGACGTGTTTCGAAGAAGATAATTTATGGATTTTCTTCCCAGTTCACTAAGTTTTTCTCTGTTTTCAGACTTCTCAATAGACATATCGTACCTTATTGCAAATCGGTACTCAACAACAGGTATCGAAGCATTTCAAGCTGCTCACAATGCTGATTTTGGTCCTGAGACACGTTTGTCAAGAGAATATACACCTGTTTCAAAAAGTCTTGCTTTAATCAAACCACATTCCTGAAGTGGAATTGTTTTTGCTGAAACCTTCCGAGTAGTTTCGTGCAACTCTCTCTGGTTATTGCAACGCCTCGATTGCGAATATCAAAAGATAGTATTGAAATTTAAAAAATGATTGGAACAATGACAAAAAAGCGCATTTTGAATATTTCAGTTTTTCTCGTTTCTGAAAATACAATTTCCGCGCTCTACAATTAAA</canonical>
            <polymorphic>TGATGAAATAATAAACGTTTTTGAGAGAGAAAAAAACGGAAATGATAATAGGAAACAATAAAAAGAACGGTCCTAAAATAGCTAAAGTATGAAAAATCTAAACCAAGCTGTCTTGTTGAATGGCTGAAACTCCACCGGAACAGAAGAATCCAACGAAATCGCTTTATTTCCTGACTAAGACTGGATTTGAACGGAAGATTTCGAATCAATGTGTATCTGGGCGTAGTGTCAGTTTCCGAAGCTACATCTGTTCTGAAACTCACCACTAGTTCATTACCTACGTCTGTTAAGGCAAGTTTCCCACTTCTGACGATAATAATCAAAATTCCAAGTTCGCAGGCAGTTTTCACTTCAGAAGCACTACTTCCATCAGCCAGCAATAGCTGTATTATCCGATGGAGCGTGTGAAGACAATACAACGCTTTGAAAATCGAAAATAATAAAGTGTTTAAAAAACACTATGTTGAAAGCCAAAAACCGTGTCATAACACAGAATTTAWAGCAAATCAATCAATTTTCGGGTAGTTCTGGGCCCCAATGATCAACGTATTCTCCAAGGTACAGACTAATCCATGACGTGTTTCGAAGAAGATAATTTATGGATTTTCTTCCCAGTTCACTAAGTTTTTCTCTGTTTTCAGACTTCTCAATAGACATATCGTACCTTATTGCAAATCGGTACTCAACAACAGGTATCGAAGCATTTCAAGCTGCTCACAATGCTGATTTTGGTCCTGAGACACGTTTGTCAAGAGAATATACACCTGTTTCAAAAAGTCTTGCTTTAATCAAACCACATTCCTGAAGTGGAATTGTTTTTGCTGAAACCTTCCGAGTAGTTTCGTGCAACTCTCTCTGGTTATTGCAACGCCTCGATTGCGAATATCAAAAGATAGTATTGAAATTTAAAAAATGATTGGAACAATGACAAAAAAGCGCATTTTGAATATTTCAGTTTTTCTCGTTTCTGAAAATACAATTTCCGCGCTCTACAATTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCCAGCAATAGCTGTATTATC</pcr_primer_p1>
		<pcr_primer_p2>TTAGTGAACTGGGAAGAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGCCAGCAATAGCTGTATTATCCGATGGAGCGTGTGAAGACAATACAACGCTTTGAAAATCGAAAATAATAAAGTGTTTAAAAAACACTATGTTGAAAGCCAAAAACCGTGTCATAACACAGAATTTATAGCAAATCAATCAATTTTCGGGTAGTTCTGGGCCCCAATGATCAACGTATTCTCCAAGGTACAGACTAATCCATGACGTGTTTCGAAGAAGATAATTTATGGATTTTCTTCCCAGTTCACTAA</canonical_amplicon>
		<polymorphic_amplicon>AGCCAGCAATAGCTGTATTATCCGATGGAGCGTGTGAAGACAATACAACGCTTTGAAAATCGAAAATAATAAAGTGTTTAAAAAACACTATGTTGAAAGCCAAAAACCGTGTCATAACACAGAATTTAWAGCAAATCAATCAATTTTCGGGTAGTTCTGGGCCCCAATGATCAACGTATTCTCCAAGGTACAGACTAATCCATGACGTGTTTCGAAGAAGATAATTTATGGATTTTCTTCCCAGTTCACTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16702</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>143844</contig_pos>
        <strand></strand>
        <context>GCGAGAAGAA[T/G]ATGACACGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AAATTACAATAATCGACCCCTAAATCTGTCAAAATTCATGGCGAGAAGAA</left_flank>
        <right_flank>ATGACACGATTCTGAGAAGGAAGAGTCGCAAATGTTTGTTGTTTTCTATT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCGCGAGCTGCGTCTCCTCGATCTGCGCACTATCTCCTTAACCTACCGACGCGTTACCTCTCCGTTCATTGTGTCTGCGCACACTGTGTCCCGTTGCACTTACTTTTGTCCTGCCCTCCTCCTCCCTTTCTTACCAATTTTCTACATAACAACACATACGTTTCTTTCCCGTTGTATACAGCTTTTGTTTTTCTTTTTTTCGAAATTAGTTGTGGTCAACTTCTTCACTTTGCTTTTCTGTCTTTTGCCACGTATTCTTTATGTTCCCCACGTAGAATTTCCTATTTTCTGTCGAAAGTTTAACGTCGGCCAAATGTGGACCATAGATAGACATCTCTAAAGGCGCGAAAAATTTATGAGTGGGTTTTGGCAGATCGTCATCTCGCATTCTACTCGTTATCTCATCTTTTTTCGACTGTCGGTCATGTCATTTTATTATTCCTCCGTAAATTACAATAATCGACCCCTAAATCTGTCAAAATTCATGGCGAGAAGAATATGACACGATTCTGAGAAGGAAGAGTCGCAAATGTTTGTTGTTTTCTATTTCTAGAAGGTTTTGAGTGAGTTTTAGATAATTTTCTGGGTATTTAGACTGTTTCGGCTGTTGAATTCCGAATTCATGTATTTCGGGTAGCATTTTGCACGGAGAATATATATTAAAACGTTATAGTAGTTGATTTTTGCCTATTCTGACTATTTCCAGAAATCTGATGCTCGTCTCTCTACTTTCAGCTCACTATGAAAATTTCGGAAGGTGTAAAACATACCTAGATTCGTTCTAGAATTTGTTCATATTTTGCGAAATTCGAATTGAGCTATTGTTACCTTCAACCAAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTACCGTTTCAGATTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAAC</canonical>
            <polymorphic>TTCCGCGAGCTGCGTCTCCTCGATCTGCGCACTATCTCCTTAACCTACCGACGCGTTACCTCTCCGTTCATTGTGTCTGCGCACACTGTGTCCCGTTGCACTTACTTTTGTCCTGCCCTCCTCCTCCCTTTCTTACCAATTTTCTACATAACAACACATACGTTTCTTTCCCGTTGTATACAGCTTTTGTTTTTCTTTTTTTCGAAATTAGTTGTGGTCAACTTCTTCACTTTGCTTTTCTGTCTTTTGCCACGTATTCTTTATGTTCCCCACGTAGAATTTCCTATTTTCTGTCGAAAGTTTAACGTCGGCCAAATGTGGACCATAGATAGACATCTCTAAAGGCGCGAAAAATTTATGAGTGGGTTTTGGCAGATCGTCATCTCGCATTCTACTCGTTATCTCATCTTTTTTCGACTGTCGGTCATGTCATTTTATTATTCCTCCGTAAATTACAATAATCGACCCCTAAATCTGTCAAAATTCATGGCGAGAAGAAKATGACACGATTCTGAGAAGGAAGAGTCGCAAATGTTTGTTGTTTTCTATTTCTAGAAGGTTTTGAGTGAGTTTTAGATAATTTTCTGGGTATTTAGACTGTTTCGGCTGTTGAATTCCGAATTCATGTATTTCGGGTAGCATTTTGCACGGAGAATATATATTAAAACGTTATAGTAGTTGATTTTTGCCTATTCTGACTATTTCCAGAAATCTGATGCTCGTCTCTCTACTTTCAGCTCACTATGAAAATTTCGGAAGGTGTAAAACATACCTAGATTCGTTCTAGAATTTGTTCATATTTTGCGAAATTCGAATTGAGCTATTGTTACCTTCAACCAAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTACCGTTTCAGATTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTTATGAGTGGGTTTTG</pcr_primer_p1>
		<pcr_primer_p2>GAAACAGTCTAAATACCCAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTTATGAGTGGGTTTTGGCAGATCGTCATCTCGCATTCTACTCGTTATCTCATCTTTTTTCGACTGTCGGTCATGTCATTTTATTATTCCTCCGTAAATTACAATAATCGACCCCTAAATCTGTCAAAATTCATGGCGAGAAGAATATGACACGATTCTGAGAAGGAAGAGTCGCAAATGTTTGTTGTTTTCTATTTCTAGAAGGTTTTGAGTGAGTTTTAGATAATTTTCTGGGTATTTAGACTGTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTTATGAGTGGGTTTTGGCAGATCGTCATCTCGCATTCTACTCGTTATCTCATCTTTTTTCGACTGTCGGTCATGTCATTTTATTATTCCTCCGTAAATTACAATAATCGACCCCTAAATCTGTCAAAATTCATGGCGAGAAGAAKATGACACGATTCTGAGAAGGAAGAGTCGCAAATGTTTGTTGTTTTCTATTTCTAGAAGGTTTTGAGTGAGTTTTAGATAATTTTCTGGGTATTTAGACTGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16703</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>143891</contig_pos>
        <strand></strand>
        <context>TGTTGTTTTC[T/G]ATTTCTAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GAATATGACACGATTCTGAGAAGGAAGAGTCGCAAATGTTTGTTGTTTTC</left_flank>
        <right_flank>ATTTCTAGAAGGTTTTGAGTGAGTTTTAGATAATTTTCTGGGTATTTAGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGACGCGTTACCTCTCCGTTCATTGTGTCTGCGCACACTGTGTCCCGTTGCACTTACTTTTGTCCTGCCCTCCTCCTCCCTTTCTTACCAATTTTCTACATAACAACACATACGTTTCTTTCCCGTTGTATACAGCTTTTGTTTTTCTTTTTTTCGAAATTAGTTGTGGTCAACTTCTTCACTTTGCTTTTCTGTCTTTTGCCACGTATTCTTTATGTTCCCCACGTAGAATTTCCTATTTTCTGTCGAAAGTTTAACGTCGGCCAAATGTGGACCATAGATAGACATCTCTAAAGGCGCGAAAAATTTATGAGTGGGTTTTGGCAGATCGTCATCTCGCATTCTACTCGTTATCTCATCTTTTTTCGACTGTCGGTCATGTCATTTTATTATTCCTCCGTAAATTACAATAATCGACCCCTAAATCTGTCAAAATTCATGGCGAGAAGAATATGACACGATTCTGAGAAGGAAGAGTCGCAAATGTTTGTTGTTTTCTATTTCTAGAAGGTTTTGAGTGAGTTTTAGATAATTTTCTGGGTATTTAGACTGTTTCGGCTGTTGAATTCCGAATTCATGTATTTCGGGTAGCATTTTGCACGGAGAATATATATTAAAACGTTATAGTAGTTGATTTTTGCCTATTCTGACTATTTCCAGAAATCTGATGCTCGTCTCTCTACTTTCAGCTCACTATGAAAATTTCGGAAGGTGTAAAACATACCTAGATTCGTTCTAGAATTTGTTCATATTTTGCGAAATTCGAATTGAGCTATTGTTACCTTCAACCAAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTACCGTTTCAGATTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGA</canonical>
            <polymorphic>CCGACGCGTTACCTCTCCGTTCATTGTGTCTGCGCACACTGTGTCCCGTTGCACTTACTTTTGTCCTGCCCTCCTCCTCCCTTTCTTACCAATTTTCTACATAACAACACATACGTTTCTTTCCCGTTGTATACAGCTTTTGTTTTTCTTTTTTTCGAAATTAGTTGTGGTCAACTTCTTCACTTTGCTTTTCTGTCTTTTGCCACGTATTCTTTATGTTCCCCACGTAGAATTTCCTATTTTCTGTCGAAAGTTTAACGTCGGCCAAATGTGGACCATAGATAGACATCTCTAAAGGCGCGAAAAATTTATGAGTGGGTTTTGGCAGATCGTCATCTCGCATTCTACTCGTTATCTCATCTTTTTTCGACTGTCGGTCATGTCATTTTATTATTCCTCCGTAAATTACAATAATCGACCCCTAAATCTGTCAAAATTCATGGCGAGAAGAATATGACACGATTCTGAGAAGGAAGAGTCGCAAATGTTTGTTGTTTTCKATTTCTAGAAGGTTTTGAGTGAGTTTTAGATAATTTTCTGGGTATTTAGACTGTTTCGGCTGTTGAATTCCGAATTCATGTATTTCGGGTAGCATTTTGCACGGAGAATATATATTAAAACGTTATAGTAGTTGATTTTTGCCTATTCTGACTATTTCCAGAAATCTGATGCTCGTCTCTCTACTTTCAGCTCACTATGAAAATTTCGGAAGGTGTAAAACATACCTAGATTCGTTCTAGAATTTGTTCATATTTTGCGAAATTCGAATTGAGCTATTGTTACCTTCAACCAAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTACCGTTTCAGATTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTTATGAGTGGGTTTTG</pcr_primer_p1>
		<pcr_primer_p2>GAAACAGTCTAAATACCCAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTTATGAGTGGGTTTTGGCAGATCGTCATCTCGCATTCTACTCGTTATCTCATCTTTTTTCGACTGTCGGTCATGTCATTTTATTATTCCTCCGTAAATTACAATAATCGACCCCTAAATCTGTCAAAATTCATGGCGAGAAGAATATGACACGATTCTGAGAAGGAAGAGTCGCAAATGTTTGTTGTTTTCTATTTCTAGAAGGTTTTGAGTGAGTTTTAGATAATTTTCTGGGTATTTAGACTGTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTTATGAGTGGGTTTTGGCAGATCGTCATCTCGCATTCTACTCGTTATCTCATCTTTTTTCGACTGTCGGTCATGTCATTTTATTATTCCTCCGTAAATTACAATAATCGACCCCTAAATCTGTCAAAATTCATGGCGAGAAGAATATGACACGATTCTGAGAAGGAAGAGTCGCAAATGTTTGTTGTTTTCKATTTCTAGAAGGTTTTGAGTGAGTTTTAGATAATTTTCTGGGTATTTAGACTGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16704</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>143983</contig_pos>
        <strand>+</strand>
        <context>ATTTCGGGTA[A/G]CATTTTGCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTATTTAGACTGTTTCGGCTGTTGAATTCCGAATTCATGTATTTCGGGTA</left_flank>
        <right_flank>CATTTTGCACGGAGAATATATATTAAAACGTTATAGTAGTTGATTTTTGC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCTACATAACAACACATACGTTTCTTTCCCGTTGTATACAGCTTTTGTTTTTCTTTTTTTCGAAATTAGTTGTGGTCAACTTCTTCACTTTGCTTTTCTGTCTTTTGCCACGTATTCTTTATGTTCCCCACGTAGAATTTCCTATTTTCTGTCGAAAGTTTAACGTCGGCCAAATGTGGACCATAGATAGACATCTCTAAAGGCGCGAAAAATTTATGAGTGGGTTTTGGCAGATCGTCATCTCGCATTCTACTCGTTATCTCATCTTTTTTCGACTGTCGGTCATGTCATTTTATTATTCCTCCGTAAATTACAATAATCGACCCCTAAATCTGTCAAAATTCATGGCGAGAAGAATATGACACGATTCTGAGAAGGAAGAGTCGCAAATGTTTGTTGTTTTCTATTTCTAGAAGGTTTTGAGTGAGTTTTAGATAATTTTCTGGGTATTTAGACTGTTTCGGCTGTTGAATTCCGAATTCATGTATTTCGGGTAGCATTTTGCACGGAGAATATATATTAAAACGTTATAGTAGTTGATTTTTGCCTATTCTGACTATTTCCAGAAATCTGATGCTCGTCTCTCTACTTTCAGCTCACTATGAAAATTTCGGAAGGTGTAAAACATACCTAGATTCGTTCTAGAATTTGTTCATATTTTGCGAAATTCGAATTGAGCTATTGTTACCTTCAACCAAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTACCGTTTCAGATTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGAACTATCTCGATTCGTGTGAAAGATATCAAAAATGGGTCAACTGATAAAAGACAAGCATTTTATCAGTTGACAGTTTTTTGATACCTTTGACA</canonical>
            <polymorphic>TTTTCTACATAACAACACATACGTTTCTTTCCCGTTGTATACAGCTTTTGTTTTTCTTTTTTTCGAAATTAGTTGTGGTCAACTTCTTCACTTTGCTTTTCTGTCTTTTGCCACGTATTCTTTATGTTCCCCACGTAGAATTTCCTATTTTCTGTCGAAAGTTTAACGTCGGCCAAATGTGGACCATAGATAGACATCTCTAAAGGCGCGAAAAATTTATGAGTGGGTTTTGGCAGATCGTCATCTCGCATTCTACTCGTTATCTCATCTTTTTTCGACTGTCGGTCATGTCATTTTATTATTCCTCCGTAAATTACAATAATCGACCCCTAAATCTGTCAAAATTCATGGCGAGAAGAATATGACACGATTCTGAGAAGGAAGAGTCGCAAATGTTTGTTGTTTTCTATTTCTAGAAGGTTTTGAGTGAGTTTTAGATAATTTTCTGGGTATTTAGACTGTTTCGGCTGTTGAATTCCGAATTCATGTATTTCGGGTARCATTTTGCACGGAGAATATATATTAAAACGTTATAGTAGTTGATTTTTGCCTATTCTGACTATTTCCAGAAATCTGATGCTCGTCTCTCTACTTTCAGCTCACTATGAAAATTTCGGAAGGTGTAAAACATACCTAGATTCGTTCTAGAATTTGTTCATATTTTGCGAAATTCGAATTGAGCTATTGTTACCTTCAACCAAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTACCGTTTCAGATTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGAACTATCTCGATTCGTGTGAAAGATATCAAAAATGGGTCAACTGATAAAAGACAAGCATTTTATCAGTTGACAGTTTTTTGATACCTTTGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTGGGTATTTAGACTGTTTC</pcr_primer_p1>
		<pcr_primer_p2>TGAAGGTAACAATAGCTCAATTC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTTCTGGGTATTTAGACTGTTTCGGCTGTTGAATTCCGAATTCATGTATTTCGGGTAGCATTTTGCACGGAGAATATATATTAAAACGTTATAGTAGTTGATTTTTGCCTATTCTGACTATTTCCAGAAATCTGATGCTCGTCTCTCTACTTTCAGCTCACTATGAAAATTTCGGAAGGTGTAAAACATACCTAGATTCGTTCTAGAATTTGTTCATATTTTGCGAAATTCGAATTGAGCTATTGTTACCTTCA</canonical_amplicon>
		<polymorphic_amplicon>TTTCTGGGTATTTAGACTGTTTCGGCTGTTGAATTCCGAATTCATGTATTTCGGGTARCATTTTGCACGGAGAATATATATTAAAACGTTATAGTAGTTGATTTTTGCCTATTCTGACTATTTCCAGAAATCTGATGCTCGTCTCTCTACTTTCAGCTCACTATGAAAATTTCGGAAGGTGTAAAACATACCTAGATTCGTTCTAGAATTTGTTCATATTTTGCGAAATTCGAATTGAGCTATTGTTACCTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16705</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>144223</contig_pos>
        <strand>+</strand>
        <context>CACAATCTAC[A/C]GTTTCAGAWY</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACCTTCAACCAAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTAC</left_flank>
        <right_flank>GTTTCAGATTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATCTCGCATTCTACTCGTTATCTCATCTTTTTTCGACTGTCGGTCATGTCATTTTATTATTCCTCCGTAAATTACAATAATCGACCCCTAAATCTGTCAAAATTCATGGCGAGAAGAATATGACACGATTCTGAGAAGGAAGAGTCGCAAATGTTTGTTGTTTTCTATTTCTAGAAGGTTTTGAGTGAGTTTTAGATAATTTTCTGGGTATTTAGACTGTTTCGGCTGTTGAATTCCGAATTCATGTATTTCGGGTAGCATTTTGCACGGAGAATATATATTAAAACGTTATAGTAGTTGATTTTTGCCTATTCTGACTATTTCCAGAAATCTGATGCTCGTCTCTCTACTTTCAGCTCACTATGAAAATTTCGGAAGGTGTAAAACATACCTAGATTCGTTCTAGAATTTGTTCATATTTTGCGAAATTCGAATTGAGCTATTGTTACCTTCAACCAAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTACCGTTTCAGATTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGAACTATCTCGATTCGTGTGAAAGATATCAAAAATGGGTCAACTGATAAAAGACAAGCATTTTATCAGTTGACAGTTTTTTGATACCTTTGACAGGGACCGAGATAATTTAGGTCAAAGTTGAAAGTTAAGTGTTTCTTCTTATACTGGGTATACGTTATAAAGACATTTTGATATCAGTCTCCACGGATAGAAAATTTCTAGAAACATCATTTTCTAGAATTCCCTATTCAGCTCTAACCAAGCTTTCACCATACTTTCTCTCCTCCACGGATACTGTCACTTGTTTTCGATTTCTTGTTTCTCATCCCCAATGCCCCTAATTATTCGTCCCC</canonical>
            <polymorphic>TCATCTCGCATTCTACTCGTTATCTCATCTTTTTTCGACTGTCGGTCATGTCATTTTATTATTCCTCCGTAAATTACAATAATCGACCCCTAAATCTGTCAAAATTCATGGCGAGAAGAATATGACACGATTCTGAGAAGGAAGAGTCGCAAATGTTTGTTGTTTTCTATTTCTAGAAGGTTTTGAGTGAGTTTTAGATAATTTTCTGGGTATTTAGACTGTTTCGGCTGTTGAATTCCGAATTCATGTATTTCGGGTAGCATTTTGCACGGAGAATATATATTAAAACGTTATAGTAGTTGATTTTTGCCTATTCTGACTATTTCCAGAAATCTGATGCTCGTCTCTCTACTTTCAGCTCACTATGAAAATTTCGGAAGGTGTAAAACATACCTAGATTCGTTCTAGAATTTGTTCATATTTTGCGAAATTCGAATTGAGCTATTGTTACCTTCAACCAAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTACMGTTTCAGATTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGAACTATCTCGATTCGTGTGAAAGATATCAAAAATGGGTCAACTGATAAAAGACAAGCATTTTATCAGTTGACAGTTTTTTGATACCTTTGACAGGGACCGAGATAATTTAGGTCAAAGTTGAAAGTTAAGTGTTTCTTCTTATACTGGGTATACGTTATAAAGACATTTTGATATCAGTCTCCACGGATAGAAAATTTCTAGAAACATCATTTTCTAGAATTCCCTATTCAGCTCTAACCAAGCTTTCACCATACTTTCTCTCCTCCACGGATACTGTCACTTGTTTTCGATTTCTTGTTTCTCATCCCCAATGCCCCTAATTATTCGTCCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTGAGCTATTGTTACCTTCA</pcr_primer_p1>
		<pcr_primer_p2>TAATCTATTTGAGTTGGGAAATG</pcr_primer_p2>
		<pcr_amplicon_size>123</pcr_amplicon_size>
		<canonical_amplicon>GAATTGAGCTATTGTTACCTTCAACCAAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTACCGTTTCAGATTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTA</canonical_amplicon>
		<polymorphic_amplicon>GAATTGAGCTATTGTTACCTTCAACCAAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTACMGTTTCAGATTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16706</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>144232</contig_pos>
        <strand>+</strand>
        <context>CMGTTTCAGA[A/T]YTTTTTTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTACCGTTTCAGA</left_flank>
        <right_flank>TTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAAC</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTACTCGTTATCTCATCTTTTTTCGACTGTCGGTCATGTCATTTTATTATTCCTCCGTAAATTACAATAATCGACCCCTAAATCTGTCAAAATTCATGGCGAGAAGAATATGACACGATTCTGAGAAGGAAGAGTCGCAAATGTTTGTTGTTTTCTATTTCTAGAAGGTTTTGAGTGAGTTTTAGATAATTTTCTGGGTATTTAGACTGTTTCGGCTGTTGAATTCCGAATTCATGTATTTCGGGTAGCATTTTGCACGGAGAATATATATTAAAACGTTATAGTAGTTGATTTTTGCCTATTCTGACTATTTCCAGAAATCTGATGCTCGTCTCTCTACTTTCAGCTCACTATGAAAATTTCGGAAGGTGTAAAACATACCTAGATTCGTTCTAGAATTTGTTCATATTTTGCGAAATTCGAATTGAGCTATTGTTACCTTCAACCAAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTACCGTTTCAGATTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGAACTATCTCGATTCGTGTGAAAGATATCAAAAATGGGTCAACTGATAAAAGACAAGCATTTTATCAGTTGACAGTTTTTTGATACCTTTGACAGGGACCGAGATAATTTAGGTCAAAGTTGAAAGTTAAGTGTTTCTTCTTATACTGGGTATACGTTATAAAGACATTTTGATATCAGTCTCCACGGATAGAAAATTTCTAGAAACATCATTTTCTAGAATTCCCTATTCAGCTCTAACCAAGCTTTCACCATACTTTCTCTCCTCCACGGATACTGTCACTTGTTTTCGATTTCTTGTTTCTCATCCCCAATGCCCCTAATTATTCGTCCCCCTTCTCTCT</canonical>
            <polymorphic>ATTCTACTCGTTATCTCATCTTTTTTCGACTGTCGGTCATGTCATTTTATTATTCCTCCGTAAATTACAATAATCGACCCCTAAATCTGTCAAAATTCATGGCGAGAAGAATATGACACGATTCTGAGAAGGAAGAGTCGCAAATGTTTGTTGTTTTCTATTTCTAGAAGGTTTTGAGTGAGTTTTAGATAATTTTCTGGGTATTTAGACTGTTTCGGCTGTTGAATTCCGAATTCATGTATTTCGGGTAGCATTTTGCACGGAGAATATATATTAAAACGTTATAGTAGTTGATTTTTGCCTATTCTGACTATTTCCAGAAATCTGATGCTCGTCTCTCTACTTTCAGCTCACTATGAAAATTTCGGAAGGTGTAAAACATACCTAGATTCGTTCTAGAATTTGTTCATATTTTGCGAAATTCGAATTGAGCTATTGTTACCTTCAACCAAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTACCGTTTCAGAWTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGAACTATCTCGATTCGTGTGAAAGATATCAAAAATGGGTCAACTGATAAAAGACAAGCATTTTATCAGTTGACAGTTTTTTGATACCTTTGACAGGGACCGAGATAATTTAGGTCAAAGTTGAAAGTTAAGTGTTTCTTCTTATACTGGGTATACGTTATAAAGACATTTTGATATCAGTCTCCACGGATAGAAAATTTCTAGAAACATCATTTTCTAGAATTCCCTATTCAGCTCTAACCAAGCTTTCACCATACTTTCTCTCCTCCACGGATACTGTCACTTGTTTTCGATTTCTTGTTTCTCATCCCCAATGCCCCTAATTATTCGTCCCCCTTCTCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCAAAATTTGATTAATGTGCT</pcr_primer_p1>
		<pcr_primer_p2>TGGAGACTGATATCAAAATGTCT</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>ACCAAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTACCGTTTCAGATTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGAACTATCTCGATTCGTGTGAAAGATATCAAAAATGGGTCAACTGATAAAAGACAAGCATTTTATCAGTTGACAGTTTTTTGATACCTTTGACAGGGACCGAGATAATTTAGGTCAAAGTTGAAAGTTAAGTGTTTCTTCTTATACTGGGTATACGTTATAAAGACATTTTGATATCAGTCTCCA</canonical_amplicon>
		<polymorphic_amplicon>ACCAAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTACCGTTTCAGAWTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGAACTATCTCGATTCGTGTGAAAGATATCAAAAATGGGTCAACTGATAAAAGACAAGCATTTTATCAGTTGACAGTTTTTTGATACCTTTGACAGGGACCGAGATAATTTAGGTCAAAGTTGAAAGTTAAGTGTTTCTTCTTATACTGGGTATACGTTATAAAGACATTTTGATATCAGTCTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16707</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>144246</contig_pos>
        <strand></strand>
        <context>TTTTTCGATT[C/T]TCGTACAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTGCTTGTAACGGATTCACAATCTACCGTTTCAGATTTTTTTTTCGATT</left_flank>
        <right_flank>TCGTACAATTCATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCATCTTTTTTCGACTGTCGGTCATGTCATTTTATTATTCCTCCGTAAATTACAATAATCGACCCCTAAATCTGTCAAAATTCATGGCGAGAAGAATATGACACGATTCTGAGAAGGAAGAGTCGCAAATGTTTGTTGTTTTCTATTTCTAGAAGGTTTTGAGTGAGTTTTAGATAATTTTCTGGGTATTTAGACTGTTTCGGCTGTTGAATTCCGAATTCATGTATTTCGGGTAGCATTTTGCACGGAGAATATATATTAAAACGTTATAGTAGTTGATTTTTGCCTATTCTGACTATTTCCAGAAATCTGATGCTCGTCTCTCTACTTTCAGCTCACTATGAAAATTTCGGAAGGTGTAAAACATACCTAGATTCGTTCTAGAATTTGTTCATATTTTGCGAAATTCGAATTGAGCTATTGTTACCTTCAACCAAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTACCGTTTCAGATTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGAACTATCTCGATTCGTGTGAAAGATATCAAAAATGGGTCAACTGATAAAAGACAAGCATTTTATCAGTTGACAGTTTTTTGATACCTTTGACAGGGACCGAGATAATTTAGGTCAAAGTTGAAAGTTAAGTGTTTCTTCTTATACTGGGTATACGTTATAAAGACATTTTGATATCAGTCTCCACGGATAGAAAATTTCTAGAAACATCATTTTCTAGAATTCCCTATTCAGCTCTAACCAAGCTTTCACCATACTTTCTCTCCTCCACGGATACTGTCACTTGTTTTCGATTTCTTGTTTCTCATCCCCAATGCCCCTAATTATTCGTCCCCCTTCTCTCTCCCTACTAGCTTAC</canonical>
            <polymorphic>CTCATCTTTTTTCGACTGTCGGTCATGTCATTTTATTATTCCTCCGTAAATTACAATAATCGACCCCTAAATCTGTCAAAATTCATGGCGAGAAGAATATGACACGATTCTGAGAAGGAAGAGTCGCAAATGTTTGTTGTTTTCTATTTCTAGAAGGTTTTGAGTGAGTTTTAGATAATTTTCTGGGTATTTAGACTGTTTCGGCTGTTGAATTCCGAATTCATGTATTTCGGGTAGCATTTTGCACGGAGAATATATATTAAAACGTTATAGTAGTTGATTTTTGCCTATTCTGACTATTTCCAGAAATCTGATGCTCGTCTCTCTACTTTCAGCTCACTATGAAAATTTCGGAAGGTGTAAAACATACCTAGATTCGTTCTAGAATTTGTTCATATTTTGCGAAATTCGAATTGAGCTATTGTTACCTTCAACCAAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTACCGTTTCAGATTTTTTTTTCGATTYTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGAACTATCTCGATTCGTGTGAAAGATATCAAAAATGGGTCAACTGATAAAAGACAAGCATTTTATCAGTTGACAGTTTTTTGATACCTTTGACAGGGACCGAGATAATTTAGGTCAAAGTTGAAAGTTAAGTGTTTCTTCTTATACTGGGTATACGTTATAAAGACATTTTGATATCAGTCTCCACGGATAGAAAATTTCTAGAAACATCATTTTCTAGAATTCCCTATTCAGCTCTAACCAAGCTTTCACCATACTTTCTCTCCTCCACGGATACTGTCACTTGTTTTCGATTTCTTGTTTCTCATCCCCAATGCCCCTAATTATTCGTCCCCCTTCTCTCTCCCTACTAGCTTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>346 253 158 106 89 33 15</canonical_bands>
                <polymorphic_bands>346 253 191 106 89 15</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>346 268 158 106 89 33</canonical_bands>
                <polymorphic_bands>346 268 191 106 89</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATGTGCTTGTAACGGATTC</pcr_primer_p1>
		<pcr_primer_p2>TGGAGACTGATATCAAAATGTCT</pcr_primer_p2>
		<pcr_amplicon_size>382</pcr_amplicon_size>
		<canonical_amplicon>TAATGTGCTTGTAACGGATTCACAATCTACCGTTTCAGATTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGAACTATCTCGATTCGTGTGAAAGATATCAAAAATGGGTCAACTGATAAAAGACAAGCATTTTATCAGTTGACAGTTTTTTGATACCTTTGACAGGGACCGAGATAATTTAGGTCAAAGTTGAAAGTTAAGTGTTTCTTCTTATACTGGGTATACGTTATAAAGACATTTTGATATCAGTCTCCA</canonical_amplicon>
		<polymorphic_amplicon>TAATGTGCTTGTAACGGATTCACAATCTACCGTTTCAGATTTTTTTTTCGATTYTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGAACTATCTCGATTCGTGTGAAAGATATCAAAAATGGGTCAACTGATAAAAGACAAGCATTTTATCAGTTGACAGTTTTTTGATACCTTTGACAGGGACCGAGATAATTTAGGTCAAAGTTGAAAGTTAAGTGTTTCTTCTTATACTGGGTATACGTTATAAAGACATTTTGATATCAGTCTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16708</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>144281</contig_pos>
        <strand>+</strand>
        <context>AATAGATTAA[A/G]CAARTTTCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAA</left_flank>
        <right_flank>CAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGA</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATTCCTCCGTAAATTACAATAATCGACCCCTAAATCTGTCAAAATTCATGGCGAGAAGAATATGACACGATTCTGAGAAGGAAGAGTCGCAAATGTTTGTTGTTTTCTATTTCTAGAAGGTTTTGAGTGAGTTTTAGATAATTTTCTGGGTATTTAGACTGTTTCGGCTGTTGAATTCCGAATTCATGTATTTCGGGTAGCATTTTGCACGGAGAATATATATTAAAACGTTATAGTAGTTGATTTTTGCCTATTCTGACTATTTCCAGAAATCTGATGCTCGTCTCTCTACTTTCAGCTCACTATGAAAATTTCGGAAGGTGTAAAACATACCTAGATTCGTTCTAGAATTTGTTCATATTTTGCGAAATTCGAATTGAGCTATTGTTACCTTCAACCAAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTACCGTTTCAGATTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGAACTATCTCGATTCGTGTGAAAGATATCAAAAATGGGTCAACTGATAAAAGACAAGCATTTTATCAGTTGACAGTTTTTTGATACCTTTGACAGGGACCGAGATAATTTAGGTCAAAGTTGAAAGTTAAGTGTTTCTTCTTATACTGGGTATACGTTATAAAGACATTTTGATATCAGTCTCCACGGATAGAAAATTTCTAGAAACATCATTTTCTAGAATTCCCTATTCAGCTCTAACCAAGCTTTCACCATACTTTCTCTCCTCCACGGATACTGTCACTTGTTTTCGATTTCTTGTTTCTCATCCCCAATGCCCCTAATTATTCGTCCCCCTTCTCTCTCCCTACTAGCTTACCGTGAAATGACGATATTGTCGTTCTAGCAAATTTG</canonical>
            <polymorphic>TTATTCCTCCGTAAATTACAATAATCGACCCCTAAATCTGTCAAAATTCATGGCGAGAAGAATATGACACGATTCTGAGAAGGAAGAGTCGCAAATGTTTGTTGTTTTCTATTTCTAGAAGGTTTTGAGTGAGTTTTAGATAATTTTCTGGGTATTTAGACTGTTTCGGCTGTTGAATTCCGAATTCATGTATTTCGGGTAGCATTTTGCACGGAGAATATATATTAAAACGTTATAGTAGTTGATTTTTGCCTATTCTGACTATTTCCAGAAATCTGATGCTCGTCTCTCTACTTTCAGCTCACTATGAAAATTTCGGAAGGTGTAAAACATACCTAGATTCGTTCTAGAATTTGTTCATATTTTGCGAAATTCGAATTGAGCTATTGTTACCTTCAACCAAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTACCGTTTCAGATTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAARCAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGAACTATCTCGATTCGTGTGAAAGATATCAAAAATGGGTCAACTGATAAAAGACAAGCATTTTATCAGTTGACAGTTTTTTGATACCTTTGACAGGGACCGAGATAATTTAGGTCAAAGTTGAAAGTTAAGTGTTTCTTCTTATACTGGGTATACGTTATAAAGACATTTTGATATCAGTCTCCACGGATAGAAAATTTCTAGAAACATCATTTTCTAGAATTCCCTATTCAGCTCTAACCAAGCTTTCACCATACTTTCTCTCCTCCACGGATACTGTCACTTGTTTTCGATTTCTTGTTTCTCATCCCCAATGCCCCTAATTATTCGTCCCCCTTCTCTCTCCCTACTAGCTTACCGTGAAATGACGATATTGTCGTTCTAGCAAATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGTAACGGATTCACAATCTAC</pcr_primer_p1>
		<pcr_primer_p2>TGGAGACTGATATCAAAATGTCT</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>CTTGTAACGGATTCACAATCTACCGTTTCAGATTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGAACTATCTCGATTCGTGTGAAAGATATCAAAAATGGGTCAACTGATAAAAGACAAGCATTTTATCAGTTGACAGTTTTTTGATACCTTTGACAGGGACCGAGATAATTTAGGTCAAAGTTGAAAGTTAAGTGTTTCTTCTTATACTGGGTATACGTTATAAAGACATTTTGATATCAGTCTCCA</canonical_amplicon>
		<polymorphic_amplicon>CTTGTAACGGATTCACAATCTACCGTTTCAGATTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAARCAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGAACTATCTCGATTCGTGTGAAAGATATCAAAAATGGGTCAACTGATAAAAGACAAGCATTTTATCAGTTGACAGTTTTTTGATACCTTTGACAGGGACCGAGATAATTTAGGTCAAAGTTGAAAGTTAAGTGTTTCTTCTTATACTGGGTATACGTTATAAAGACATTTTGATATCAGTCTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16709</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>144313</contig_pos>
        <strand>+</strand>
        <context>TTGAATATAT[C/T]GTAAATTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATAT</left_flank>
        <right_flank>GTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAG</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATCTGTCAAAATTCATGGCGAGAAGAATATGACACGATTCTGAGAAGGAAGAGTCGCAAATGTTTGTTGTTTTCTATTTCTAGAAGGTTTTGAGTGAGTTTTAGATAATTTTCTGGGTATTTAGACTGTTTCGGCTGTTGAATTCCGAATTCATGTATTTCGGGTAGCATTTTGCACGGAGAATATATATTAAAACGTTATAGTAGTTGATTTTTGCCTATTCTGACTATTTCCAGAAATCTGATGCTCGTCTCTCTACTTTCAGCTCACTATGAAAATTTCGGAAGGTGTAAAACATACCTAGATTCGTTCTAGAATTTGTTCATATTTTGCGAAATTCGAATTGAGCTATTGTTACCTTCAACCAAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTACCGTTTCAGATTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGAACTATCTCGATTCGTGTGAAAGATATCAAAAATGGGTCAACTGATAAAAGACAAGCATTTTATCAGTTGACAGTTTTTTGATACCTTTGACAGGGACCGAGATAATTTAGGTCAAAGTTGAAAGTTAAGTGTTTCTTCTTATACTGGGTATACGTTATAAAGACATTTTGATATCAGTCTCCACGGATAGAAAATTTCTAGAAACATCATTTTCTAGAATTCCCTATTCAGCTCTAACCAAGCTTTCACCATACTTTCTCTCCTCCACGGATACTGTCACTTGTTTTCGATTTCTTGTTTCTCATCCCCAATGCCCCTAATTATTCGTCCCCCTTCTCTCTCCCTACTAGCTTACCGTGAAATGACGATATTGTCGTTCTAGCAAATTTGTCTCCTTCACACAGACAGACCGTCAGTCAGTA</canonical>
            <polymorphic>TAAATCTGTCAAAATTCATGGCGAGAAGAATATGACACGATTCTGAGAAGGAAGAGTCGCAAATGTTTGTTGTTTTCTATTTCTAGAAGGTTTTGAGTGAGTTTTAGATAATTTTCTGGGTATTTAGACTGTTTCGGCTGTTGAATTCCGAATTCATGTATTTCGGGTAGCATTTTGCACGGAGAATATATATTAAAACGTTATAGTAGTTGATTTTTGCCTATTCTGACTATTTCCAGAAATCTGATGCTCGTCTCTCTACTTTCAGCTCACTATGAAAATTTCGGAAGGTGTAAAACATACCTAGATTCGTTCTAGAATTTGTTCATATTTTGCGAAATTCGAATTGAGCTATTGTTACCTTCAACCAAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTACCGTTTCAGATTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATATYGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGAACTATCTCGATTCGTGTGAAAGATATCAAAAATGGGTCAACTGATAAAAGACAAGCATTTTATCAGTTGACAGTTTTTTGATACCTTTGACAGGGACCGAGATAATTTAGGTCAAAGTTGAAAGTTAAGTGTTTCTTCTTATACTGGGTATACGTTATAAAGACATTTTGATATCAGTCTCCACGGATAGAAAATTTCTAGAAACATCATTTTCTAGAATTCCCTATTCAGCTCTAACCAAGCTTTCACCATACTTTCTCTCCTCCACGGATACTGTCACTTGTTTTCGATTTCTTGTTTCTCATCCCCAATGCCCCTAATTATTCGTCCCCCTTCTCTCTCCCTACTAGCTTACCGTGAAATGACGATATTGTCGTTCTAGCAAATTTGTCTCCTTCACACAGACAGACCGTCAGTCAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTCCCAACTCAAATAGATTA</pcr_primer_p1>
		<pcr_primer_p2>TGGAGACTGATATCAAAATGTCT</pcr_primer_p2>
		<pcr_amplicon_size>318</pcr_amplicon_size>
		<canonical_amplicon>CATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGAACTATCTCGATTCGTGTGAAAGATATCAAAAATGGGTCAACTGATAAAAGACAAGCATTTTATCAGTTGACAGTTTTTTGATACCTTTGACAGGGACCGAGATAATTTAGGTCAAAGTTGAAAGTTAAGTGTTTCTTCTTATACTGGGTATACGTTATAAAGACATTTTGATATCAGTCTCCA</canonical_amplicon>
		<polymorphic_amplicon>CATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATATYGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGAACTATCTCGATTCGTGTGAAAGATATCAAAAATGGGTCAACTGATAAAAGACAAGCATTTTATCAGTTGACAGTTTTTTGATACCTTTGACAGGGACCGAGATAATTTAGGTCAAAGTTGAAAGTTAAGTGTTTCTTCTTATACTGGGTATACGTTATAAAGACATTTTGATATCAGTCTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16710</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>182253</contig_pos>
        <strand>+</strand>
        <context>ACTATATTTT[G/T]CAGAATAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTGTACATCATTCGAATTTAGACACAAAATCTCATTGGAAACTATATTTT</left_flank>
        <right_flank>CAGAATAAAAACTTTCTGAAACTAATATACAATACAATTCCTATTGAAGT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACCTAGAGAAAAGTTGTTGAATTCCAAATTTTTTAGATATCAAAAATATAATTTCGATTTTAATTACTGTTGAAAAAGGGAAGAACCTACAGCTGTTCAATATAACCCAATATTTGAGCTTATGGGTTGAACACTTCTTTAAAATTTTTCCAAGAAAAGGATATCATATGCGGCCAAATTCACGGAATTTTCTTGTATACATTTTTACGTCTACAATACAAAAACGGACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTGAAAAACTAGGAATTTATTAGAAGTTCTGCACATTCAAAGTTATCCATCTATGTATGCTTCACACTCTCTAAAATTTTCAAATTATTCGGAAATTTGACATCCGAGGTCCAGACCCTTGAAAATGGTCAACATGACCGAAAATCAAATGAAAAATACGTTTATGTAGGTATATCTTATGTTTACTGTACATCATTCGAATTTAGACACAAAATCTCATTGGAAACTATATTTTGCAGAATAAAAACTTTCTGAAACTAATATACAATACAATTCCTATTGAAGTGGATTACTAAAAATTCTTCTTTTCCAATGCTGGTTTCTTTTAAAAATTGCATTGTTCCCAAACAATGTTATTCTCAAGAATGAGAAGAAAAATTGAAAAACTCGGTTATGTTTAACACGTTCTCCCGTTTTTTTTACATCTCTCCCATCGCCGACAAAGATGCGAAAATAGGCGTGAGCCATTCAGAAATAATAGAGATGCGCGGTCCCGCCGCAGCTCTGCGCCGGACAGCAAGATGACCACAAAAGTAAAGCTTATAGGGACCACAAAAATCGAAAGAAGTGTAGAAGAAGAAAACGAAGAAAAAAGGAGCAAGAAAAAAAATAGGAGAGATGTAGACGAAGAGCAAAATAGGGATGAGAAGAGAAGGCGAAGGCCTGGGGGTGGCCGCCATGCTTTTTCGTTTCGCACTTCTTTTTTTTCGCTCCTCATTCCTCCTAGAAGAAAGTG</canonical>
            <polymorphic>GACCTAGAGAAAAGTTGTTGAATTCCAAATTTTTTAGATATCAAAAATATAATTTCGATTTTAATTACTGTTGAAAAAGGGAAGAACCTACAGCTGTTCAATATAACCCAATATTTGAGCTTATGGGTTGAACACTTCTTTAAAATTTTTCCAAGAAAAGGATATCATATGCGGCCAAATTCACGGAATTTTCTTGTATACATTTTTACGTCTACAATACAAAAACGGACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTGAAAAACTAGGAATTTATTAGAAGTTCTGCACATTCAAAGTTATCCATCTATGTATGCTTCACACTCTCTAAAATTTTCAAATTATTCGGAAATTTGACATCCGAGGTCCAGACCCTTGAAAATGGTCAACATGACCGAAAATCAAATGAAAAATACGTTTATGTAGGTATATCTTATGTTTACTGTACATCATTCGAATTTAGACACAAAATCTCATTGGAAACTATATTTTKCAGAATAAAAACTTTCTGAAACTAATATACAATACAATTCCTATTGAAGTGGATTACTAAAAATTCTTCTTTTCCAATGCTGGTTTCTTTTAAAAATTGCATTGTTCCCAAACAATGTTATTCTCAAGAATGAGAAGAAAAATTGAAAAACTCGGTTATGTTTAACACGTTCTCCCGTTTTTTTTACATCTCTCCCATCGCCGACAAAGATGCGAAAATAGGCGTGAGCCATTCAGAAATAATAGAGATGCGCGGTCCCGCCGCAGCTCTGCGCCGGACAGCAAGATGACCACAAAAGTAAAGCTTATAGGGACCACAAAAATCGAAAGAAGTGTAGAAGAAGAAAACGAAGAAAAAAGGAGCAAGAAAAAAAATAGGAGAGATGTAGACGAAGAGCAAAATAGGGATGAGAAGAGAAGGCGAAGGCCTGGGGGTGGCCGCCATGCTTTTTCGTTTCGCACTTCTTTTTTTTCGCTCCTCATTCCTCCTAGAAGAAAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>401 295 205 99</canonical_bands>
                <polymorphic_bands>401 304 295</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTTTTCCAAGAAAAGGATA</pcr_primer_p1>
		<pcr_primer_p2>TAATCCACTTCAATAGGAATTGT</pcr_primer_p2>
		<pcr_amplicon_size>415</pcr_amplicon_size>
		<canonical_amplicon>AAAATTTTTCCAAGAAAAGGATATCATATGCGGCCAAATTCACGGAATTTTCTTGTATACATTTTTACGTCTACAATACAAAAACGGACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTGAAAAACTAGGAATTTATTAGAAGTTCTGCACATTCAAAGTTATCCATCTATGTATGCTTCACACTCTCTAAAATTTTCAAATTATTCGGAAATTTGACATCCGAGGTCCAGACCCTTGAAAATGGTCAACATGACCGAAAATCAAATGAAAAATACGTTTATGTAGGTATATCTTATGTTTACTGTACATCATTCGAATTTAGACACAAAATCTCATTGGAAACTATATTTTGCAGAATAAAAACTTTCTGAAACTAATATACAATACAATTCCTATTGAAGTGGATTA</canonical_amplicon>
		<polymorphic_amplicon>AAAATTTTTCCAAGAAAAGGATATCATATGCGGCCAAATTCACGGAATTTTCTTGTATACATTTTTACGTCTACAATACAAAAACGGACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTGAAAAACTAGGAATTTATTAGAAGTTCTGCACATTCAAAGTTATCCATCTATGTATGCTTCACACTCTCTAAAATTTTCAAATTATTCGGAAATTTGACATCCGAGGTCCAGACCCTTGAAAATGGTCAACATGACCGAAAATCAAATGAAAAATACGTTTATGTAGGTATATCTTATGTTTACTGTACATCATTCGAATTTAGACACAAAATCTCATTGGAAACTATATTTTKCAGAATAAAAACTTTCTGAAACTAATATACAATACAATTCCTATTGAAGTGGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16711</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>182390</contig_pos>
        <strand>+</strand>
        <context>AGRATGAGAA[A/G]AAAAATTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTTAAAAATTGCATTGTTCCCAAACAATGTTATTCTCAAGAATGAGAA</left_flank>
        <right_flank>AAAAATTGAAAAACTCGGTTATGTTTAACACGTTCTCCCGTTTTTTTTAC</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTAAAATTTTTCCAAGAAAAGGATATCATATGCGGCCAAATTCACGGAATTTTCTTGTATACATTTTTACGTCTACAATACAAAAACGGACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTGAAAAACTAGGAATTTATTAGAAGTTCTGCACATTCAAAGTTATCCATCTATGTATGCTTCACACTCTCTAAAATTTTCAAATTATTCGGAAATTTGACATCCGAGGTCCAGACCCTTGAAAATGGTCAACATGACCGAAAATCAAATGAAAAATACGTTTATGTAGGTATATCTTATGTTTACTGTACATCATTCGAATTTAGACACAAAATCTCATTGGAAACTATATTTTGCAGAATAAAAACTTTCTGAAACTAATATACAATACAATTCCTATTGAAGTGGATTACTAAAAATTCTTCTTTTCCAATGCTGGTTTCTTTTAAAAATTGCATTGTTCCCAAACAATGTTATTCTCAAGAATGAGAAGAAAAATTGAAAAACTCGGTTATGTTTAACACGTTCTCCCGTTTTTTTTACATCTCTCCCATCGCCGACAAAGATGCGAAAATAGGCGTGAGCCATTCAGAAATAATAGAGATGCGCGGTCCCGCCGCAGCTCTGCGCCGGACAGCAAGATGACCACAAAAGTAAAGCTTATAGGGACCACAAAAATCGAAAGAAGTGTAGAAGAAGAAAACGAAGAAAAAAGGAGCAAGAAAAAAAATAGGAGAGATGTAGACGAAGAGCAAAATAGGGATGAGAAGAGAAGGCGAAGGCCTGGGGGTGGCCGCCATGCTTTTTCGTTTCGCACTTCTTTTTTTTCGCTCCTCATTCCTCCTAGAAGAAAGTGCCCCACCCTTTCTTCTGCCCGTAATAGGAATGAAATGTGGAATAGTATGCAAAAAGTTTTGGGGAAGTGCATAAATTGATGTGAATACGCGGAGGAGAGGGGCGTGGTCCCATCCACTCTTCTTTTCTTAGAACACA</canonical>
            <polymorphic>CTTTAAAATTTTTCCAAGAAAAGGATATCATATGCGGCCAAATTCACGGAATTTTCTTGTATACATTTTTACGTCTACAATACAAAAACGGACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTGAAAAACTAGGAATTTATTAGAAGTTCTGCACATTCAAAGTTATCCATCTATGTATGCTTCACACTCTCTAAAATTTTCAAATTATTCGGAAATTTGACATCCGAGGTCCAGACCCTTGAAAATGGTCAACATGACCGAAAATCAAATGAAAAATACGTTTATGTAGGTATATCTTATGTTTACTGTACATCATTCGAATTTAGACACAAAATCTCATTGGAAACTATATTTTGCAGAATAAAAACTTTCTGAAACTAATATACAATACAATTCCTATTGAAGTGGATTACTAAAAATTCTTCTTTTCCAATGCTGGTTTCTTTTAAAAATTGCATTGTTCCCAAACAATGTTATTCTCAAGAATGAGAARAAAAATTGAAAAACTCGGTTATGTTTAACACGTTCTCCCGTTTTTTTTACATCTCTCCCATCGCCGACAAAGATGCGAAAATAGGCGTGAGCCATTCAGAAATAATAGAGATGCGCGGTCCCGCCGCAGCTCTGCGCCGGACAGCAAGATGACCACAAAAGTAAAGCTTATAGGGACCACAAAAATCGAAAGAAGTGTAGAAGAAGAAAACGAAGAAAAAAGGAGCAAGAAAAAAAATAGGAGAGATGTAGACGAAGAGCAAAATAGGGATGAGAAGAGAAGGCGAAGGCCTGGGGGTGGCCGCCATGCTTTTTCGTTTCGCACTTCTTTTTTTTCGCTCCTCATTCCTCCTAGAAGAAAGTGCCCCACCCTTTCTTCTGCCCGTAATAGGAATGAAATGTGGAATAGTATGCAAAAAGTTTTGGGGAAGTGCATAAATTGATGTGAATACGCGGAGGAGAGGGGCGTGGTCCCATCCACTCTTCTTTTCTTAGAACACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAAAAATTCTTCTTTTCCAATG</pcr_primer_p1>
		<pcr_primer_p2>TAAGCTTTACTTTTGTGGTCATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTAAAAATTCTTCTTTTCCAATGCTGGTTTCTTTTAAAAATTGCATTGTTCCCAAACAATGTTATTCTCAAGAATGAGAAGAAAAATTGAAAAACTCGGTTATGTTTAACACGTTCTCCCGTTTTTTTTACATCTCTCCCATCGCCGACAAAGATGCGAAAATAGGCGTGAGCCATTCAGAAATAATAGAGATGCGCGGTCCCGCCGCAGCTCTGCGCCGGACAGCAAGATGACCACAAAAGTAAAGCTTA</canonical_amplicon>
		<polymorphic_amplicon>CTAAAAATTCTTCTTTTCCAATGCTGGTTTCTTTTAAAAATTGCATTGTTCCCAAACAATGTTATTCTCAAGAATGAGAARAAAAATTGAAAAACTCGGTTATGTTTAACACGTTCTCCCGTTTTTTTTACATCTCTCCCATCGCCGACAAAGATGCGAAAATAGGCGTGAGCCATTCAGAAATAATAGAGATGCGCGGTCCCGCCGCAGCTCTGCGCCGGACAGCAAGATGACCACAAAAGTAAAGCTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16712</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>182445</contig_pos>
        <strand>+</strand>
        <context>TTTTACATCT[C/T]TCCCATCGCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGAAAAACTCGGTTATGTTTAACACGTTCTCCCGTTTTTTTTACATCT</left_flank>
        <right_flank>TCCCATCGCCGACAAAGATGCGAAAATAGGCGTGAGCCATTCAGAAATAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGTATACATTTTTACGTCTACAATACAAAAACGGACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTGAAAAACTAGGAATTTATTAGAAGTTCTGCACATTCAAAGTTATCCATCTATGTATGCTTCACACTCTCTAAAATTTTCAAATTATTCGGAAATTTGACATCCGAGGTCCAGACCCTTGAAAATGGTCAACATGACCGAAAATCAAATGAAAAATACGTTTATGTAGGTATATCTTATGTTTACTGTACATCATTCGAATTTAGACACAAAATCTCATTGGAAACTATATTTTGCAGAATAAAAACTTTCTGAAACTAATATACAATACAATTCCTATTGAAGTGGATTACTAAAAATTCTTCTTTTCCAATGCTGGTTTCTTTTAAAAATTGCATTGTTCCCAAACAATGTTATTCTCAAGAATGAGAAGAAAAATTGAAAAACTCGGTTATGTTTAACACGTTCTCCCGTTTTTTTTACATCTCTCCCATCGCCGACAAAGATGCGAAAATAGGCGTGAGCCATTCAGAAATAATAGAGATGCGCGGTCCCGCCGCAGCTCTGCGCCGGACAGCAAGATGACCACAAAAGTAAAGCTTATAGGGACCACAAAAATCGAAAGAAGTGTAGAAGAAGAAAACGAAGAAAAAAGGAGCAAGAAAAAAAATAGGAGAGATGTAGACGAAGAGCAAAATAGGGATGAGAAGAGAAGGCGAAGGCCTGGGGGTGGCCGCCATGCTTTTTCGTTTCGCACTTCTTTTTTTTCGCTCCTCATTCCTCCTAGAAGAAAGTGCCCCACCCTTTCTTCTGCCCGTAATAGGAATGAAATGTGGAATAGTATGCAAAAAGTTTTGGGGAAGTGCATAAATTGATGTGAATACGCGGAGGAGAGGGGCGTGGTCCCATCCACTCTTCTTTTCTTAGAACACACACACACACAATGAGCTTCCTCTTTTGAGCTATTCTACAAAAAGACGTAGTAGGA</canonical>
            <polymorphic>CTTGTATACATTTTTACGTCTACAATACAAAAACGGACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTGAAAAACTAGGAATTTATTAGAAGTTCTGCACATTCAAAGTTATCCATCTATGTATGCTTCACACTCTCTAAAATTTTCAAATTATTCGGAAATTTGACATCCGAGGTCCAGACCCTTGAAAATGGTCAACATGACCGAAAATCAAATGAAAAATACGTTTATGTAGGTATATCTTATGTTTACTGTACATCATTCGAATTTAGACACAAAATCTCATTGGAAACTATATTTTGCAGAATAAAAACTTTCTGAAACTAATATACAATACAATTCCTATTGAAGTGGATTACTAAAAATTCTTCTTTTCCAATGCTGGTTTCTTTTAAAAATTGCATTGTTCCCAAACAATGTTATTCTCAAGAATGAGAAGAAAAATTGAAAAACTCGGTTATGTTTAACACGTTCTCCCGTTTTTTTTACATCTYTCCCATCGCCGACAAAGATGCGAAAATAGGCGTGAGCCATTCAGAAATAATAGAGATGCGCGGTCCCGCCGCAGCTCTGCGCCGGACAGCAAGATGACCACAAAAGTAAAGCTTATAGGGACCACAAAAATCGAAAGAAGTGTAGAAGAAGAAAACGAAGAAAAAAGGAGCAAGAAAAAAAATAGGAGAGATGTAGACGAAGAGCAAAATAGGGATGAGAAGAGAAGGCGAAGGCCTGGGGGTGGCCGCCATGCTTTTTCGTTTCGCACTTCTTTTTTTTCGCTCCTCATTCCTCCTAGAAGAAAGTGCCCCACCCTTTCTTCTGCCCGTAATAGGAATGAAATGTGGAATAGTATGCAAAAAGTTTTGGGGAAGTGCATAAATTGATGTGAATACGCGGAGGAGAGGGGCGTGGTCCCATCCACTCTTCTTTTCTTAGAACACACACACACACAATGAGCTTCCTCTTTTGAGCTATTCTACAAAAAGACGTAGTAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAAAAATTCTTCTTTTCCAATG</pcr_primer_p1>
		<pcr_primer_p2>TAAGCTTTACTTTTGTGGTCATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTAAAAATTCTTCTTTTCCAATGCTGGTTTCTTTTAAAAATTGCATTGTTCCCAAACAATGTTATTCTCAAGAATGAGAAGAAAAATTGAAAAACTCGGTTATGTTTAACACGTTCTCCCGTTTTTTTTACATCTCTCCCATCGCCGACAAAGATGCGAAAATAGGCGTGAGCCATTCAGAAATAATAGAGATGCGCGGTCCCGCCGCAGCTCTGCGCCGGACAGCAAGATGACCACAAAAGTAAAGCTTA</canonical_amplicon>
		<polymorphic_amplicon>CTAAAAATTCTTCTTTTCCAATGCTGGTTTCTTTTAAAAATTGCATTGTTCCCAAACAATGTTATTCTCAAGAATGAGAAGAAAAATTGAAAAACTCGGTTATGTTTAACACGTTCTCCCGTTTTTTTTACATCTYTCCCATCGCCGACAAAGATGCGAAAATAGGCGTGAGCCATTCAGAAATAATAGAGATGCGCGGTCCCGCCGCAGCTCTGCGCCGGACAGCAAGATGACCACAAAAGTAAAGCTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16713</snp_id>
        <super_contig>c009500792.Contig1</super_contig>
        <contig_pos>7262</contig_pos>
        <strand></strand>
        <context>AACGAACAAC[G/A]AAAAAGGAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATCCAAGATTTTCCAACAAAAAAAAGTCTTATACCTGCTCAACGAACAAC</left_flank>
        <right_flank>AAAAAGGAGACGAACTCTTTTTTTTTCATTGCTCAGCTTTGTGGAAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTACATATACCCTTTTTCCCCTTTTGGCCCCAAACCTCAATTTTTATGTCTCCCACACAACAAAACATATTTTTCTCAAAATGTTTTTTTTTCTCACGGGATTTTCCTCCAAAATCTGCTGAATCTTGTCGTACTCGTGCCGNNNNNNNNNNCCCCCCCCCCCCCCCCCCGAGAGGAGTTTGGAAAAATAGAAGGGCCCTGTAATAGAAGGGCCCTCGTAATAGAAGGGCCCCATGTAAAGAAGGACCCCCTTCAAAATAGTCATGAAATAAAAAAATTTCCGCACTTTTTTAATGAAAAATGTTCCGGGAATTCTAAAATTTAATAGAAATCTGTTGGAAAACAACTTTTTTGCTCAAAAACTTAATTAATTTTGGTGAAATTGACAGATTTTCATGACTTTTGAACGAAAATTCGCCTAAATTTGATTCAAGTACCATTTTTTAGAATCCAAGATTTTCCAACAAAAAAAAGTCTTATACCTGCTCAACGAACAACGAAAAAGGAGACGAACTCTTTTTTTTTCATTGCTCAGCTTTGTGGAAAAAAGGGGAAATGGTGTCGTACTATTGTTCAAAGAGTACACACACACACATCATGAAAAGGAAGGTCCTTCTCGAAGAAAAGGGGAACAGAATGGAGATGAAAAAGAGGAGAAATTTTGCTGGTTTCCATGGAGACCAGCAAAATAAGAGGACGAGGAGGCAAAAACCAAAGTTTTTTCGTTTCCCATGAGTACTAGGGAGACTCTCCCTGGCGTGTGTAATGGATTGCGTGTCAAATTATTAATGTGTATATCTAGAAGGGGGGGGGGGTGAATCTCAAACTTTATAGGATCTTTATTACTGGTACTCTTTTTTTGACTTGAATGAATTTTTAAACGATTTTTCTGAAAATTAGAAATGATTTTCTAGATCTGGGTCTATTCTATTTTTTATATTTATTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>ATTACATATACCCTTTTTCCCCTTTTGGCCCCAAACCTCAATTTTTATGTCTCCCACACAACAAAACATATTTTTCTCAAAATGTTTTTTTTTCTCACGGGATTTTCCTCCAAAATCTGCTGAATCTTGTCGTACTCGTGCCGNNNNNNNNNNCCCCCCCCCCCCCCCCCCGAGAGGAGTTTGGAAAAATAGAAGGGCCCTGTAATAGAAGGGCCCTCGTAATAGAAGGGCCCCATGTAAAGAAGGACCCCCTTCAAAATAGTCATGAAATAAAAAAATTTCCGCACTTTTTTAATGAAAAATGTTCCGGGAATTCTAAAATTTAATAGAAATCTGTTGGAAAACAACTTTTTTGCTCAAAAACTTAATTAATTTTGGTGAAATTGACAGATTTTCATGACTTTTGAACGAAAATTCGCCTAAATTTGATTCAAGTACCATTTTTTAGAATCCAAGATTTTCCAACAAAAAAAAGTCTTATACCTGCTCAACGAACAACRAAAAAGGAGACGAACTCTTTTTTTTTCATTGCTCAGCTTTGTGGAAAAAAGGGGAAATGGTGTCGTACTATTGTTCAAAGAGTACACACACACACATCATGAAAAGGAAGGTCCTTCTCGAAGAAAAGGGGAACAGAATGGAGATGAAAAAGAGGAGAAATTTTGCTGGTTTCCATGGAGACCAGCAAAATAAGAGGACGAGGAGGCAAAAACCAAAGTTTTTTCGTTTCCCATGAGTACTAGGGAGACTCTCCCTGGCGTGTGTAATGGATTGCGTGTCAAATTATTAATGTGTATATCTAGAAGGGGGGGGGGGTGAATCTCAAACTTTATAGGATCTTTATTACTGGTACTCTTTTTTTGACTTGAATGAATTTTTAAACGATTTTTCTGAAAATTAGAAATGATTTTCTAGATCTGGGTCTATTCTATTTTTTATATTTATTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAAATCTGTTGGAAAACAACT</pcr_primer_p1>
		<pcr_primer_p2>GAACAATAGTACGACACCATTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGAAATCTGTTGGAAAACAACTTTTTTGCTCAAAAACTTAATTAATTTTGGTGAAATTGACAGATTTTCATGACTTTTGAACGAAAATTCGCCTAAATTTGATTCAAGTACCATTTTTTAGAATCCAAGATTTTCCAACAAAAAAAAGTCTTATACCTGCTCAACGAACAACGAAAAAGGAGACGAACTCTTTTTTTTTCATTGCTCAGCTTTGTGGAAAAAAGGGGAAATGGTGTCGTACTATTGTTC</canonical_amplicon>
		<polymorphic_amplicon>TAGAAATCTGTTGGAAAACAACTTTTTTGCTCAAAAACTTAATTAATTTTGGTGAAATTGACAGATTTTCATGACTTTTGAACGAAAATTCGCCTAAATTTGATTCAAGTACCATTTTTTAGAATCCAAGATTTTCCAACAAAAAAAAGTCTTATACCTGCTCAACGAACAACRAAAAAGGAGACGAACTCTTTTTTTTTCATTGCTCAGCTTTGTGGAAAAAAGGGGAAATGGTGTCGTACTATTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16714</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>4260</contig_pos>
        <strand>+</strand>
        <context>TGGCCGACTG[A/G]ATTCGGGATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCGAAAGACCTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTG</left_flank>
        <right_flank>ATTCGGGATCTAGAAAAATAGGACATTTAAATTGGGGTCCGATTTTTAGC</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTTATAGTTGCGCCGAGTTGTAGCAAGAACTCTTCCAGTTTCTCCTTTTCCAGTTGTCTCCAGAAGAAGTCGTTATTGTTCAGGTTTGGAATAATAAACGATGTAATGAACTGAAAAAATTAACAAATTTTGTGGCACAATTTGAATTCTCACCTCGTAATTTTTCTCCAAAATATTACAATCAATAGATGCACTCTTCTCAATCGCCCATACTCGAATCCATCCATTTGTGTGACAAACAGCTCGAGATAAGGCGATTCTCAACCAGATAAACTCGATTCTACCATCACGAACGGCGTTCAAGAGGGCTTCAAAGCGTGGAAGTACCGGACGAATGATATGGAACTGAAATCCTTACTTTTAACCTAAAACTTTGAGTGATAAAGGCACCTGTGGCTCTTCAAGGGCTTCGATTAGCGTATAGAAATCTGTCCATGCTGATCCAGAGCGAAAGACCTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTGAATTCGGGATCTAGAAAAATAGGACATTTAAATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGCGGGCATACGGTAGACGATGATAGGTAAGCAAACACCGCGGCGGCAAAGTGCACAGAATGAAAGGTTGTGTGATTTTTTTCAGGTTTTTCAAACGGATTTTGAGGGGAATTAGCTGAAAAATAGCAAAAACACAGGAGAGGACACATTAGAGAATTTCTTGCAATTAGAAACATTCCAGAATTTTTTGATAATCATACCTAACAACACATCAGCACATATTCCTTCTAAATCCCTTTTTCTCGCATTCGTAATATCTTTCTCTGCCACAATGCAAAGCGTCGGAAGGACAATTTGAAAGGTATTCTGGTCAACGAGTCGCATGTGTCTGAAATTCAGTCATTCAGAATATTAAGAAAAAAAAAATCATTAAGTACGCCAGATAATCCGCAAGTTGCTCATCGCCATCG</canonical>
            <polymorphic>GAATTTATAGTTGCGCCGAGTTGTAGCAAGAACTCTTCCAGTTTCTCCTTTTCCAGTTGTCTCCAGAAGAAGTCGTTATTGTTCAGGTTTGGAATAATAAACGATGTAATGAACTGAAAAAATTAACAAATTTTGTGGCACAATTTGAATTCTCACCTCGTAATTTTTCTCCAAAATATTACAATCAATAGATGCACTCTTCTCAATCGCCCATACTCGAATCCATCCATTTGTGTGACAAACAGCTCGAGATAAGGCGATTCTCAACCAGATAAACTCGATTCTACCATCACGAACGGCGTTCAAGAGGGCTTCAAAGCGTGGAAGTACCGGACGAATGATATGGAACTGAAATCCTTACTTTTAACCTAAAACTTTGAGTGATAAAGGCACCTGTGGCTCTTCAAGGGCTTCGATTAGCGTATAGAAATCTGTCCATGCTGATCCAGAGCGAAAGACCTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTGRATTCGGGATCTAGAAAAATAGGACATTTAAATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGCGGGCATACGGTAGACGATGATAGGTAAGCAAACACCGCGGCGGCAAAGTGCACAGAATGAAAGGTTGTGTGATTTTTTTCAGGTTTTTCAAACGGATTTTGAGGGGAATTAGCTGAAAAATAGCAAAAACACAGGAGAGGACACATTAGAGAATTTCTTGCAATTAGAAACATTCCAGAATTTTTTGATAATCATACCTAACAACACATCAGCACATATTCCTTCTAAATCCCTTTTTCTCGCATTCGTAATATCTTTCTCTGCCACAATGCAAAGCGTCGGAAGGACAATTTGAAAGGTATTCTGGTCAACGAGTCGCATGTGTCTGAAATTCAGTCATTCAGAATATTAAGAAAAAAAAAATCATTAAGTACGCCAGATAATCCGCAAGTTGCTCATCGCCATCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>352 181 151 127 78 55 27 19 9 1</canonical_bands>
                <polymorphic_bands>407 181 151 127 78 27 19 9 1</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>501 352 147</canonical_bands>
                <polymorphic_bands>853 147</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>338 126 119 110 78 45 41 30 25 17 14 13 10 10 9 8 6 1</canonical_bands>
                <polymorphic_bands>368 126 119 110 78 45 41 25 17 14 13 10 10 9 8 6 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGAACTGAAATCCTTACTTTTA</pcr_primer_p1>
		<pcr_primer_p2>GCCCTTCATTTCTTCTAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGAACTGAAATCCTTACTTTTAACCTAAAACTTTGAGTGATAAAGGCACCTGTGGCTCTTCAAGGGCTTCGATTAGCGTATAGAAATCTGTCCATGCTGATCCAGAGCGAAAGACCTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTGAATTCGGGATCTAGAAAAATAGGACATTTAAATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGC</canonical_amplicon>
		<polymorphic_amplicon>TGGAACTGAAATCCTTACTTTTAACCTAAAACTTTGAGTGATAAAGGCACCTGTGGCTCTTCAAGGGCTTCGATTAGCGTATAGAAATCTGTCCATGCTGATCCAGAGCGAAAGACCTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTGRATTCGGGATCTAGAAAAATAGGACATTTAAATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16715</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>4281</contig_pos>
        <strand>+</strand>
        <context>TAGAAAAATA[G/T]GAMATTTAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAAGAACTGCTCGTCGGGATGGCCGACTGAATTCGGGATCTAGAAAAATA</left_flank>
        <right_flank>GACATTTAAATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTAGCAAGAACTCTTCCAGTTTCTCCTTTTCCAGTTGTCTCCAGAAGAAGTCGTTATTGTTCAGGTTTGGAATAATAAACGATGTAATGAACTGAAAAAATTAACAAATTTTGTGGCACAATTTGAATTCTCACCTCGTAATTTTTCTCCAAAATATTACAATCAATAGATGCACTCTTCTCAATCGCCCATACTCGAATCCATCCATTTGTGTGACAAACAGCTCGAGATAAGGCGATTCTCAACCAGATAAACTCGATTCTACCATCACGAACGGCGTTCAAGAGGGCTTCAAAGCGTGGAAGTACCGGACGAATGATATGGAACTGAAATCCTTACTTTTAACCTAAAACTTTGAGTGATAAAGGCACCTGTGGCTCTTCAAGGGCTTCGATTAGCGTATAGAAATCTGTCCATGCTGATCCAGAGCGAAAGACCTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTGAATTCGGGATCTAGAAAAATAGGACATTTAAATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGCGGGCATACGGTAGACGATGATAGGTAAGCAAACACCGCGGCGGCAAAGTGCACAGAATGAAAGGTTGTGTGATTTTTTTCAGGTTTTTCAAACGGATTTTGAGGGGAATTAGCTGAAAAATAGCAAAAACACAGGAGAGGACACATTAGAGAATTTCTTGCAATTAGAAACATTCCAGAATTTTTTGATAATCATACCTAACAACACATCAGCACATATTCCTTCTAAATCCCTTTTTCTCGCATTCGTAATATCTTTCTCTGCCACAATGCAAAGCGTCGGAAGGACAATTTGAAAGGTATTCTGGTCAACGAGTCGCATGTGTCTGAAATTCAGTCATTCAGAATATTAAGAAAAAAAAAATCATTAAGTACGCCAGATAATCCGCAAGTTGCTCATCGCCATCGACATTTTCAGCTCGTTGGCTC</canonical>
            <polymorphic>TGTAGCAAGAACTCTTCCAGTTTCTCCTTTTCCAGTTGTCTCCAGAAGAAGTCGTTATTGTTCAGGTTTGGAATAATAAACGATGTAATGAACTGAAAAAATTAACAAATTTTGTGGCACAATTTGAATTCTCACCTCGTAATTTTTCTCCAAAATATTACAATCAATAGATGCACTCTTCTCAATCGCCCATACTCGAATCCATCCATTTGTGTGACAAACAGCTCGAGATAAGGCGATTCTCAACCAGATAAACTCGATTCTACCATCACGAACGGCGTTCAAGAGGGCTTCAAAGCGTGGAAGTACCGGACGAATGATATGGAACTGAAATCCTTACTTTTAACCTAAAACTTTGAGTGATAAAGGCACCTGTGGCTCTTCAAGGGCTTCGATTAGCGTATAGAAATCTGTCCATGCTGATCCAGAGCGAAAGACCTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTGAATTCGGGATCTAGAAAAATAKGACATTTAAATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGCGGGCATACGGTAGACGATGATAGGTAAGCAAACACCGCGGCGGCAAAGTGCACAGAATGAAAGGTTGTGTGATTTTTTTCAGGTTTTTCAAACGGATTTTGAGGGGAATTAGCTGAAAAATAGCAAAAACACAGGAGAGGACACATTAGAGAATTTCTTGCAATTAGAAACATTCCAGAATTTTTTGATAATCATACCTAACAACACATCAGCACATATTCCTTCTAAATCCCTTTTTCTCGCATTCGTAATATCTTTCTCTGCCACAATGCAAAGCGTCGGAAGGACAATTTGAAAGGTATTCTGGTCAACGAGTCGCATGTGTCTGAAATTCAGTCATTCAGAATATTAAGAAAAAAAAAATCATTAAGTACGCCAGATAATCCGCAAGTTGCTCATCGCCATCGACATTTTCAGCTCGTTGGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAACTGAAATCCTTACTTTTA</pcr_primer_p1>
		<pcr_primer_p2>GCCCTTCATTTCTTCTAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGAACTGAAATCCTTACTTTTAACCTAAAACTTTGAGTGATAAAGGCACCTGTGGCTCTTCAAGGGCTTCGATTAGCGTATAGAAATCTGTCCATGCTGATCCAGAGCGAAAGACCTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTGAATTCGGGATCTAGAAAAATAGGACATTTAAATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGC</canonical_amplicon>
		<polymorphic_amplicon>TGGAACTGAAATCCTTACTTTTAACCTAAAACTTTGAGTGATAAAGGCACCTGTGGCTCTTCAAGGGCTTCGATTAGCGTATAGAAATCTGTCCATGCTGATCCAGAGCGAAAGACCTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTGAATTCGGGATCTAGAAAAATAKGACATTTAAATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16716</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>4284</contig_pos>
        <strand>+</strand>
        <context>AAAAATAKGA[A/C]ATTTAAATTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAACTGCTCGTCGGGATGGCCGACTGAATTCGGGATCTAGAAAAATAGGA</left_flank>
        <right_flank>ATTTAAATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCAAGAACTCTTCCAGTTTCTCCTTTTCCAGTTGTCTCCAGAAGAAGTCGTTATTGTTCAGGTTTGGAATAATAAACGATGTAATGAACTGAAAAAATTAACAAATTTTGTGGCACAATTTGAATTCTCACCTCGTAATTTTTCTCCAAAATATTACAATCAATAGATGCACTCTTCTCAATCGCCCATACTCGAATCCATCCATTTGTGTGACAAACAGCTCGAGATAAGGCGATTCTCAACCAGATAAACTCGATTCTACCATCACGAACGGCGTTCAAGAGGGCTTCAAAGCGTGGAAGTACCGGACGAATGATATGGAACTGAAATCCTTACTTTTAACCTAAAACTTTGAGTGATAAAGGCACCTGTGGCTCTTCAAGGGCTTCGATTAGCGTATAGAAATCTGTCCATGCTGATCCAGAGCGAAAGACCTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTGAATTCGGGATCTAGAAAAATAGGACATTTAAATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGCGGGCATACGGTAGACGATGATAGGTAAGCAAACACCGCGGCGGCAAAGTGCACAGAATGAAAGGTTGTGTGATTTTTTTCAGGTTTTTCAAACGGATTTTGAGGGGAATTAGCTGAAAAATAGCAAAAACACAGGAGAGGACACATTAGAGAATTTCTTGCAATTAGAAACATTCCAGAATTTTTTGATAATCATACCTAACAACACATCAGCACATATTCCTTCTAAATCCCTTTTTCTCGCATTCGTAATATCTTTCTCTGCCACAATGCAAAGCGTCGGAAGGACAATTTGAAAGGTATTCTGGTCAACGAGTCGCATGTGTCTGAAATTCAGTCATTCAGAATATTAAGAAAAAAAAAATCATTAAGTACGCCAGATAATCCGCAAGTTGCTCATCGCCATCGACATTTTCAGCTCGTTGGCTCCAA</canonical>
            <polymorphic>AGCAAGAACTCTTCCAGTTTCTCCTTTTCCAGTTGTCTCCAGAAGAAGTCGTTATTGTTCAGGTTTGGAATAATAAACGATGTAATGAACTGAAAAAATTAACAAATTTTGTGGCACAATTTGAATTCTCACCTCGTAATTTTTCTCCAAAATATTACAATCAATAGATGCACTCTTCTCAATCGCCCATACTCGAATCCATCCATTTGTGTGACAAACAGCTCGAGATAAGGCGATTCTCAACCAGATAAACTCGATTCTACCATCACGAACGGCGTTCAAGAGGGCTTCAAAGCGTGGAAGTACCGGACGAATGATATGGAACTGAAATCCTTACTTTTAACCTAAAACTTTGAGTGATAAAGGCACCTGTGGCTCTTCAAGGGCTTCGATTAGCGTATAGAAATCTGTCCATGCTGATCCAGAGCGAAAGACCTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTGAATTCGGGATCTAGAAAAATAGGAMATTTAAATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGCGGGCATACGGTAGACGATGATAGGTAAGCAAACACCGCGGCGGCAAAGTGCACAGAATGAAAGGTTGTGTGATTTTTTTCAGGTTTTTCAAACGGATTTTGAGGGGAATTAGCTGAAAAATAGCAAAAACACAGGAGAGGACACATTAGAGAATTTCTTGCAATTAGAAACATTCCAGAATTTTTTGATAATCATACCTAACAACACATCAGCACATATTCCTTCTAAATCCCTTTTTCTCGCATTCGTAATATCTTTCTCTGCCACAATGCAAAGCGTCGGAAGGACAATTTGAAAGGTATTCTGGTCAACGAGTCGCATGTGTCTGAAATTCAGTCATTCAGAATATTAAGAAAAAAAAAATCATTAAGTACGCCAGATAATCCGCAAGTTGCTCATCGCCATCGACATTTTCAGCTCGTTGGCTCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAACTGAAATCCTTACTTTTA</pcr_primer_p1>
		<pcr_primer_p2>GCCCTTCATTTCTTCTAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGAACTGAAATCCTTACTTTTAACCTAAAACTTTGAGTGATAAAGGCACCTGTGGCTCTTCAAGGGCTTCGATTAGCGTATAGAAATCTGTCCATGCTGATCCAGAGCGAAAGACCTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTGAATTCGGGATCTAGAAAAATAGGACATTTAAATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGC</canonical_amplicon>
		<polymorphic_amplicon>TGGAACTGAAATCCTTACTTTTAACCTAAAACTTTGAGTGATAAAGGCACCTGTGGCTCTTCAAGGGCTTCGATTAGCGTATAGAAATCTGTCCATGCTGATCCAGAGCGAAAGACCTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTGAATTCGGGATCTAGAAAAATAGGAMATTTAAATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16717</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>4307</contig_pos>
        <strand>+</strand>
        <context>GTCCGATTTT[C/T]AGCTGCAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGAATTCGGGATCTAGAAAAATAGGACATTTAAATTGGGGTCCGATTTT</left_flank>
        <right_flank>AGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGCGGGC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTCCAGTTGTCTCCAGAAGAAGTCGTTATTGTTCAGGTTTGGAATAATAAACGATGTAATGAACTGAAAAAATTAACAAATTTTGTGGCACAATTTGAATTCTCACCTCGTAATTTTTCTCCAAAATATTACAATCAATAGATGCACTCTTCTCAATCGCCCATACTCGAATCCATCCATTTGTGTGACAAACAGCTCGAGATAAGGCGATTCTCAACCAGATAAACTCGATTCTACCATCACGAACGGCGTTCAAGAGGGCTTCAAAGCGTGGAAGTACCGGACGAATGATATGGAACTGAAATCCTTACTTTTAACCTAAAACTTTGAGTGATAAAGGCACCTGTGGCTCTTCAAGGGCTTCGATTAGCGTATAGAAATCTGTCCATGCTGATCCAGAGCGAAAGACCTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTGAATTCGGGATCTAGAAAAATAGGACATTTAAATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGCGGGCATACGGTAGACGATGATAGGTAAGCAAACACCGCGGCGGCAAAGTGCACAGAATGAAAGGTTGTGTGATTTTTTTCAGGTTTTTCAAACGGATTTTGAGGGGAATTAGCTGAAAAATAGCAAAAACACAGGAGAGGACACATTAGAGAATTTCTTGCAATTAGAAACATTCCAGAATTTTTTGATAATCATACCTAACAACACATCAGCACATATTCCTTCTAAATCCCTTTTTCTCGCATTCGTAATATCTTTCTCTGCCACAATGCAAAGCGTCGGAAGGACAATTTGAAAGGTATTCTGGTCAACGAGTCGCATGTGTCTGAAATTCAGTCATTCAGAATATTAAGAAAAAAAAAATCATTAAGTACGCCAGATAATCCGCAAGTTGCTCATCGCCATCGACATTTTCAGCTCGTTGGCTCCAATTTTCTCGAATTGAAGATTCCGC</canonical>
            <polymorphic>CTTTTCCAGTTGTCTCCAGAAGAAGTCGTTATTGTTCAGGTTTGGAATAATAAACGATGTAATGAACTGAAAAAATTAACAAATTTTGTGGCACAATTTGAATTCTCACCTCGTAATTTTTCTCCAAAATATTACAATCAATAGATGCACTCTTCTCAATCGCCCATACTCGAATCCATCCATTTGTGTGACAAACAGCTCGAGATAAGGCGATTCTCAACCAGATAAACTCGATTCTACCATCACGAACGGCGTTCAAGAGGGCTTCAAAGCGTGGAAGTACCGGACGAATGATATGGAACTGAAATCCTTACTTTTAACCTAAAACTTTGAGTGATAAAGGCACCTGTGGCTCTTCAAGGGCTTCGATTAGCGTATAGAAATCTGTCCATGCTGATCCAGAGCGAAAGACCTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTGAATTCGGGATCTAGAAAAATAGGACATTTAAATTGGGGTCCGATTTTYAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGCGGGCATACGGTAGACGATGATAGGTAAGCAAACACCGCGGCGGCAAAGTGCACAGAATGAAAGGTTGTGTGATTTTTTTCAGGTTTTTCAAACGGATTTTGAGGGGAATTAGCTGAAAAATAGCAAAAACACAGGAGAGGACACATTAGAGAATTTCTTGCAATTAGAAACATTCCAGAATTTTTTGATAATCATACCTAACAACACATCAGCACATATTCCTTCTAAATCCCTTTTTCTCGCATTCGTAATATCTTTCTCTGCCACAATGCAAAGCGTCGGAAGGACAATTTGAAAGGTATTCTGGTCAACGAGTCGCATGTGTCTGAAATTCAGTCATTCAGAATATTAAGAAAAAAAAAATCATTAAGTACGCCAGATAATCCGCAAGTTGCTCATCGCCATCGACATTTTCAGCTCGTTGGCTCCAATTTTCTCGAATTGAAGATTCCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGATTAGCGTATAGAAATCTG</pcr_primer_p1>
		<pcr_primer_p2>CCTTTCATTCTGTGCACTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTCGATTAGCGTATAGAAATCTGTCCATGCTGATCCAGAGCGAAAGACCTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTGAATTCGGGATCTAGAAAAATAGGACATTTAAATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGCGGGCATACGGTAGACGATGATAGGTAAGCAAACACCGCGGCGGCAAAGTGCACAGAATGAAAGG</canonical_amplicon>
		<polymorphic_amplicon>TTCGATTAGCGTATAGAAATCTGTCCATGCTGATCCAGAGCGAAAGACCTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTGAATTCGGGATCTAGAAAAATAGGACATTTAAATTGGGGTCCGATTTTYAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGCGGGCATACGGTAGACGATGATAGGTAAGCAAACACCGCGGCGGCAAAGTGCACAGAATGAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16718</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>4355</contig_pos>
        <strand>+</strand>
        <context>ATGAAGGGCG[A/G]GCATACGGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGCG</left_flank>
        <right_flank>GCATACGGTAGACGATGATAGGTAAGCAAACACCGCGGCGGCAAAGTGCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAAACGATGTAATGAACTGAAAAAATTAACAAATTTTGTGGCACAATTTGAATTCTCACCTCGTAATTTTTCTCCAAAATATTACAATCAATAGATGCACTCTTCTCAATCGCCCATACTCGAATCCATCCATTTGTGTGACAAACAGCTCGAGATAAGGCGATTCTCAACCAGATAAACTCGATTCTACCATCACGAACGGCGTTCAAGAGGGCTTCAAAGCGTGGAAGTACCGGACGAATGATATGGAACTGAAATCCTTACTTTTAACCTAAAACTTTGAGTGATAAAGGCACCTGTGGCTCTTCAAGGGCTTCGATTAGCGTATAGAAATCTGTCCATGCTGATCCAGAGCGAAAGACCTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTGAATTCGGGATCTAGAAAAATAGGACATTTAAATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGCGGGCATACGGTAGACGATGATAGGTAAGCAAACACCGCGGCGGCAAAGTGCACAGAATGAAAGGTTGTGTGATTTTTTTCAGGTTTTTCAAACGGATTTTGAGGGGAATTAGCTGAAAAATAGCAAAAACACAGGAGAGGACACATTAGAGAATTTCTTGCAATTAGAAACATTCCAGAATTTTTTGATAATCATACCTAACAACACATCAGCACATATTCCTTCTAAATCCCTTTTTCTCGCATTCGTAATATCTTTCTCTGCCACAATGCAAAGCGTCGGAAGGACAATTTGAAAGGTATTCTGGTCAACGAGTCGCATGTGTCTGAAATTCAGTCATTCAGAATATTAAGAAAAAAAAAATCATTAAGTACGCCAGATAATCCGCAAGTTGCTCATCGCCATCGACATTTTCAGCTCGTTGGCTCCAATTTTCTCGAATTGAAGATTCCGCCACGACGACGTCATCTGATGACATCTTCTGATAATATGATCGGTTTTA</canonical>
            <polymorphic>AATAAACGATGTAATGAACTGAAAAAATTAACAAATTTTGTGGCACAATTTGAATTCTCACCTCGTAATTTTTCTCCAAAATATTACAATCAATAGATGCACTCTTCTCAATCGCCCATACTCGAATCCATCCATTTGTGTGACAAACAGCTCGAGATAAGGCGATTCTCAACCAGATAAACTCGATTCTACCATCACGAACGGCGTTCAAGAGGGCTTCAAAGCGTGGAAGTACCGGACGAATGATATGGAACTGAAATCCTTACTTTTAACCTAAAACTTTGAGTGATAAAGGCACCTGTGGCTCTTCAAGGGCTTCGATTAGCGTATAGAAATCTGTCCATGCTGATCCAGAGCGAAAGACCTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTGAATTCGGGATCTAGAAAAATAGGACATTTAAATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGCGRGCATACGGTAGACGATGATAGGTAAGCAAACACCGCGGCGGCAAAGTGCACAGAATGAAAGGTTGTGTGATTTTTTTCAGGTTTTTCAAACGGATTTTGAGGGGAATTAGCTGAAAAATAGCAAAAACACAGGAGAGGACACATTAGAGAATTTCTTGCAATTAGAAACATTCCAGAATTTTTTGATAATCATACCTAACAACACATCAGCACATATTCCTTCTAAATCCCTTTTTCTCGCATTCGTAATATCTTTCTCTGCCACAATGCAAAGCGTCGGAAGGACAATTTGAAAGGTATTCTGGTCAACGAGTCGCATGTGTCTGAAATTCAGTCATTCAGAATATTAAGAAAAAAAAAATCATTAAGTACGCCAGATAATCCGCAAGTTGCTCATCGCCATCGACATTTTCAGCTCGTTGGCTCCAATTTTCTCGAATTGAAGATTCCGCCACGACGACGTCATCTGATGACATCTTCTGATAATATGATCGGTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>496 346 66 51 37 4</canonical_bands>
                <polymorphic_bands>533 346 66 51 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCGATTAGCGTATAGAAATCTG</pcr_primer_p1>
		<pcr_primer_p2>CCTTTCATTCTGTGCACTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTCGATTAGCGTATAGAAATCTGTCCATGCTGATCCAGAGCGAAAGACCTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTGAATTCGGGATCTAGAAAAATAGGACATTTAAATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGCGGGCATACGGTAGACGATGATAGGTAAGCAAACACCGCGGCGGCAAAGTGCACAGAATGAAAGG</canonical_amplicon>
		<polymorphic_amplicon>TTCGATTAGCGTATAGAAATCTGTCCATGCTGATCCAGAGCGAAAGACCTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTGAATTCGGGATCTAGAAAAATAGGACATTTAAATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGCGRGCATACGGTAGACGATGATAGGTAAGCAAACACCGCGGCGGCAAAGTGCACAGAATGAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16719</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>4376</contig_pos>
        <strand>+</strand>
        <context>GACGATGATA[C/G]GTAAGCAAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTGTAAAATTAGAAGAAATGAAGGGCGGGCATACGGTAGACGATGATA</left_flank>
        <right_flank>GTAAGCAAACACCGCGGCGGCAAAGTGCACAGAATGAAAGGTTGTGTGAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAATTAACAAATTTTGTGGCACAATTTGAATTCTCACCTCGTAATTTTTCTCCAAAATATTACAATCAATAGATGCACTCTTCTCAATCGCCCATACTCGAATCCATCCATTTGTGTGACAAACAGCTCGAGATAAGGCGATTCTCAACCAGATAAACTCGATTCTACCATCACGAACGGCGTTCAAGAGGGCTTCAAAGCGTGGAAGTACCGGACGAATGATATGGAACTGAAATCCTTACTTTTAACCTAAAACTTTGAGTGATAAAGGCACCTGTGGCTCTTCAAGGGCTTCGATTAGCGTATAGAAATCTGTCCATGCTGATCCAGAGCGAAAGACCTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTGAATTCGGGATCTAGAAAAATAGGACATTTAAATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGCGGGCATACGGTAGACGATGATAGGTAAGCAAACACCGCGGCGGCAAAGTGCACAGAATGAAAGGTTGTGTGATTTTTTTCAGGTTTTTCAAACGGATTTTGAGGGGAATTAGCTGAAAAATAGCAAAAACACAGGAGAGGACACATTAGAGAATTTCTTGCAATTAGAAACATTCCAGAATTTTTTGATAATCATACCTAACAACACATCAGCACATATTCCTTCTAAATCCCTTTTTCTCGCATTCGTAATATCTTTCTCTGCCACAATGCAAAGCGTCGGAAGGACAATTTGAAAGGTATTCTGGTCAACGAGTCGCATGTGTCTGAAATTCAGTCATTCAGAATATTAAGAAAAAAAAAATCATTAAGTACGCCAGATAATCCGCAAGTTGCTCATCGCCATCGACATTTTCAGCTCGTTGGCTCCAATTTTCTCGAATTGAAGATTCCGCCACGACGACGTCATCTGATGACATCTTCTGATAATATGATCGGTTTTATAAAAATTTAGCTGTATTATG</canonical>
            <polymorphic>AAAAAATTAACAAATTTTGTGGCACAATTTGAATTCTCACCTCGTAATTTTTCTCCAAAATATTACAATCAATAGATGCACTCTTCTCAATCGCCCATACTCGAATCCATCCATTTGTGTGACAAACAGCTCGAGATAAGGCGATTCTCAACCAGATAAACTCGATTCTACCATCACGAACGGCGTTCAAGAGGGCTTCAAAGCGTGGAAGTACCGGACGAATGATATGGAACTGAAATCCTTACTTTTAACCTAAAACTTTGAGTGATAAAGGCACCTGTGGCTCTTCAAGGGCTTCGATTAGCGTATAGAAATCTGTCCATGCTGATCCAGAGCGAAAGACCTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTGAATTCGGGATCTAGAAAAATAGGACATTTAAATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGCGGGCATACGGTAGACGATGATASGTAAGCAAACACCGCGGCGGCAAAGTGCACAGAATGAAAGGTTGTGTGATTTTTTTCAGGTTTTTCAAACGGATTTTGAGGGGAATTAGCTGAAAAATAGCAAAAACACAGGAGAGGACACATTAGAGAATTTCTTGCAATTAGAAACATTCCAGAATTTTTTGATAATCATACCTAACAACACATCAGCACATATTCCTTCTAAATCCCTTTTTCTCGCATTCGTAATATCTTTCTCTGCCACAATGCAAAGCGTCGGAAGGACAATTTGAAAGGTATTCTGGTCAACGAGTCGCATGTGTCTGAAATTCAGTCATTCAGAATATTAAGAAAAAAAAAATCATTAAGTACGCCAGATAATCCGCAAGTTGCTCATCGCCATCGACATTTTCAGCTCGTTGGCTCCAATTTTCTCGAATTGAAGATTCCGCCACGACGACGTCATCTGATGACATCTTCTGATAATATGATCGGTTTTATAAAAATTTAGCTGTATTATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGCGAAAGACCTTGAGAC</pcr_primer_p1>
		<pcr_primer_p2>CTCAAAATCCGTTTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGAGCGAAAGACCTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTGAATTCGGGATCTAGAAAAATAGGACATTTAAATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGCGGGCATACGGTAGACGATGATAGGTAAGCAAACACCGCGGCGGCAAAGTGCACAGAATGAAAGGTTGTGTGATTTTTTTCAGGTTTTTCAAACGGATTTTGAG</canonical_amplicon>
		<polymorphic_amplicon>AGAGCGAAAGACCTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTGAATTCGGGATCTAGAAAAATAGGACATTTAAATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGCGGGCATACGGTAGACGATGATASGTAAGCAAACACCGCGGCGGCAAAGTGCACAGAATGAAAGGTTGTGTGATTTTTTTCAGGTTTTTCAAACGGATTTTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16720</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>4420</contig_pos>
        <strand>+</strand>
        <context>ATGAAAGGTT[G/T]TGTGATTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGATAGGTAAGCAAACACCGCGGCGGCAAAGTGCACAGAATGAAAGGTT</left_flank>
        <right_flank>TGTGATTTTTTTCAGGTTTTTCAAACGGATTTTGAGGGGAATTAGCTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATTTTTCTCCAAAATATTACAATCAATAGATGCACTCTTCTCAATCGCCCATACTCGAATCCATCCATTTGTGTGACAAACAGCTCGAGATAAGGCGATTCTCAACCAGATAAACTCGATTCTACCATCACGAACGGCGTTCAAGAGGGCTTCAAAGCGTGGAAGTACCGGACGAATGATATGGAACTGAAATCCTTACTTTTAACCTAAAACTTTGAGTGATAAAGGCACCTGTGGCTCTTCAAGGGCTTCGATTAGCGTATAGAAATCTGTCCATGCTGATCCAGAGCGAAAGACCTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTGAATTCGGGATCTAGAAAAATAGGACATTTAAATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGCGGGCATACGGTAGACGATGATAGGTAAGCAAACACCGCGGCGGCAAAGTGCACAGAATGAAAGGTTGTGTGATTTTTTTCAGGTTTTTCAAACGGATTTTGAGGGGAATTAGCTGAAAAATAGCAAAAACACAGGAGAGGACACATTAGAGAATTTCTTGCAATTAGAAACATTCCAGAATTTTTTGATAATCATACCTAACAACACATCAGCACATATTCCTTCTAAATCCCTTTTTCTCGCATTCGTAATATCTTTCTCTGCCACAATGCAAAGCGTCGGAAGGACAATTTGAAAGGTATTCTGGTCAACGAGTCGCATGTGTCTGAAATTCAGTCATTCAGAATATTAAGAAAAAAAAAATCATTAAGTACGCCAGATAATCCGCAAGTTGCTCATCGCCATCGACATTTTCAGCTCGTTGGCTCCAATTTTCTCGAATTGAAGATTCCGCCACGACGACGTCATCTGATGACATCTTCTGATAATATGATCGGTTTTATAAAAATTTAGCTGTATTATGCTTGTCTGAGAAAAAAAAGGTTGAGACGCAGAGAAAAAGTGTCT</canonical>
            <polymorphic>TAATTTTTCTCCAAAATATTACAATCAATAGATGCACTCTTCTCAATCGCCCATACTCGAATCCATCCATTTGTGTGACAAACAGCTCGAGATAAGGCGATTCTCAACCAGATAAACTCGATTCTACCATCACGAACGGCGTTCAAGAGGGCTTCAAAGCGTGGAAGTACCGGACGAATGATATGGAACTGAAATCCTTACTTTTAACCTAAAACTTTGAGTGATAAAGGCACCTGTGGCTCTTCAAGGGCTTCGATTAGCGTATAGAAATCTGTCCATGCTGATCCAGAGCGAAAGACCTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTGAATTCGGGATCTAGAAAAATAGGACATTTAAATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGCGGGCATACGGTAGACGATGATAGGTAAGCAAACACCGCGGCGGCAAAGTGCACAGAATGAAAGGTTKTGTGATTTTTTTCAGGTTTTTCAAACGGATTTTGAGGGGAATTAGCTGAAAAATAGCAAAAACACAGGAGAGGACACATTAGAGAATTTCTTGCAATTAGAAACATTCCAGAATTTTTTGATAATCATACCTAACAACACATCAGCACATATTCCTTCTAAATCCCTTTTTCTCGCATTCGTAATATCTTTCTCTGCCACAATGCAAAGCGTCGGAAGGACAATTTGAAAGGTATTCTGGTCAACGAGTCGCATGTGTCTGAAATTCAGTCATTCAGAATATTAAGAAAAAAAAAATCATTAAGTACGCCAGATAATCCGCAAGTTGCTCATCGCCATCGACATTTTCAGCTCGTTGGCTCCAATTTTCTCGAATTGAAGATTCCGCCACGACGACGTCATCTGATGACATCTTCTGATAATATGATCGGTTTTATAAAAATTTAGCTGTATTATGCTTGTCTGAGAAAAAAAAGGTTGAGACGCAGAGAAAAAGTGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>229 132 108 63 60 60 58 55 52 39 36 31 17 16 12 9 8 6 3 2 2 2</canonical_bands>
                <polymorphic_bands>229 132 108 63 60 60 58 55 52 39 36 31 19 16 12 9 8 6 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTGAGACAGGCAAGAACTG</pcr_primer_p1>
		<pcr_primer_p2>CTGTGTTTTTGCTATTTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>CTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTGAATTCGGGATCTAGAAAAATAGGACATTTAAATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGCGGGCATACGGTAGACGATGATAGGTAAGCAAACACCGCGGCGGCAAAGTGCACAGAATGAAAGGTTGTGTGATTTTTTTCAGGTTTTTCAAACGGATTTTGAGGGGAATTAGCTGAAAAATAGCAAAAACACAG</canonical_amplicon>
		<polymorphic_amplicon>CTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTGAATTCGGGATCTAGAAAAATAGGACATTTAAATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGCGGGCATACGGTAGACGATGATAGGTAAGCAAACACCGCGGCGGCAAAGTGCACAGAATGAAAGGTTKTGTGATTTTTTTCAGGTTTTTCAAACGGATTTTGAGGGGAATTAGCTGAAAAATAGCAAAAACACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16721</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>4464</contig_pos>
        <strand>+</strand>
        <context>GAGGGGAATT[A/C]GCTGAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGGTTGTGTGATTTTTTTCAGGTTTTTCAAACGGATTTTGAGGGGAATT</left_flank>
        <right_flank>GCTGAAAAATAGCAAAAACACAGGAGAGGACACATTAGAGAATTTCTTGC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCGCCCATACTCGAATCCATCCATTTGTGTGACAAACAGCTCGAGATAAGGCGATTCTCAACCAGATAAACTCGATTCTACCATCACGAACGGCGTTCAAGAGGGCTTCAAAGCGTGGAAGTACCGGACGAATGATATGGAACTGAAATCCTTACTTTTAACCTAAAACTTTGAGTGATAAAGGCACCTGTGGCTCTTCAAGGGCTTCGATTAGCGTATAGAAATCTGTCCATGCTGATCCAGAGCGAAAGACCTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTGAATTCGGGATCTAGAAAAATAGGACATTTAAATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGCGGGCATACGGTAGACGATGATAGGTAAGCAAACACCGCGGCGGCAAAGTGCACAGAATGAAAGGTTGTGTGATTTTTTTCAGGTTTTTCAAACGGATTTTGAGGGGAATTAGCTGAAAAATAGCAAAAACACAGGAGAGGACACATTAGAGAATTTCTTGCAATTAGAAACATTCCAGAATTTTTTGATAATCATACCTAACAACACATCAGCACATATTCCTTCTAAATCCCTTTTTCTCGCATTCGTAATATCTTTCTCTGCCACAATGCAAAGCGTCGGAAGGACAATTTGAAAGGTATTCTGGTCAACGAGTCGCATGTGTCTGAAATTCAGTCATTCAGAATATTAAGAAAAAAAAAATCATTAAGTACGCCAGATAATCCGCAAGTTGCTCATCGCCATCGACATTTTCAGCTCGTTGGCTCCAATTTTCTCGAATTGAAGATTCCGCCACGACGACGTCATCTGATGACATCTTCTGATAATATGATCGGTTTTATAAAAATTTAGCTGTATTATGCTTGTCTGAGAAAAAAAAGGTTGAGACGCAGAGAAAAAGTGTCTGCGTCTCCACCGTTTGTGTGCTATTTAGGCTCTCCGCTTCGATA</canonical>
            <polymorphic>AATCGCCCATACTCGAATCCATCCATTTGTGTGACAAACAGCTCGAGATAAGGCGATTCTCAACCAGATAAACTCGATTCTACCATCACGAACGGCGTTCAAGAGGGCTTCAAAGCGTGGAAGTACCGGACGAATGATATGGAACTGAAATCCTTACTTTTAACCTAAAACTTTGAGTGATAAAGGCACCTGTGGCTCTTCAAGGGCTTCGATTAGCGTATAGAAATCTGTCCATGCTGATCCAGAGCGAAAGACCTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTGAATTCGGGATCTAGAAAAATAGGACATTTAAATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGCGGGCATACGGTAGACGATGATAGGTAAGCAAACACCGCGGCGGCAAAGTGCACAGAATGAAAGGTTGTGTGATTTTTTTCAGGTTTTTCAAACGGATTTTGAGGGGAATTMGCTGAAAAATAGCAAAAACACAGGAGAGGACACATTAGAGAATTTCTTGCAATTAGAAACATTCCAGAATTTTTTGATAATCATACCTAACAACACATCAGCACATATTCCTTCTAAATCCCTTTTTCTCGCATTCGTAATATCTTTCTCTGCCACAATGCAAAGCGTCGGAAGGACAATTTGAAAGGTATTCTGGTCAACGAGTCGCATGTGTCTGAAATTCAGTCATTCAGAATATTAAGAAAAAAAAAATCATTAAGTACGCCAGATAATCCGCAAGTTGCTCATCGCCATCGACATTTTCAGCTCGTTGGCTCCAATTTTCTCGAATTGAAGATTCCGCCACGACGACGTCATCTGATGACATCTTCTGATAATATGATCGGTTTTATAAAAATTTAGCTGTATTATGCTTGTCTGAGAAAAAAAAGGTTGAGACGCAGAGAAAAAGTGTCTGCGTCTCCACCGTTTGTGTGCTATTTAGGCTCTCCGCTTCGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>305 304 156 98 96 41</canonical_bands>
                <polymorphic_bands>461 304 98 96 41</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>305 156 88 88 83 82 66 57 41 15 11 8</canonical_bands>
                <polymorphic_bands>461 88 88 83 82 66 57 41 15 11 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAGTGCACAGAATGAAAG</pcr_primer_p1>
		<pcr_primer_p2>ATATTACGAATGCGAGAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>211</pcr_amplicon_size>
		<canonical_amplicon>CAAAGTGCACAGAATGAAAGGTTGTGTGATTTTTTTCAGGTTTTTCAAACGGATTTTGAGGGGAATTAGCTGAAAAATAGCAAAAACACAGGAGAGGACACATTAGAGAATTTCTTGCAATTAGAAACATTCCAGAATTTTTTGATAATCATACCTAACAACACATCAGCACATATTCCTTCTAAATCCCTTTTTCTCGCATTCGTAATAT</canonical_amplicon>
		<polymorphic_amplicon>CAAAGTGCACAGAATGAAAGGTTGTGTGATTTTTTTCAGGTTTTTCAAACGGATTTTGAGGGGAATTMGCTGAAAAATAGCAAAAACACAGGAGAGGACACATTAGAGAATTTCTTGCAATTAGAAACATTCCAGAATTTTTTGATAATCATACCTAACAACACATCAGCACATATTCCTTCTAAATCCCTTTTTCTCGCATTCGTAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16722</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>4608</contig_pos>
        <strand>+</strand>
        <context>TTCGTAATAT[C/T]TTTCTCTGCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACATCAGCACATATTCCTTCTAAATCCCTTTTTCTCGCATTCGTAATAT</left_flank>
        <right_flank>TTTCTCTGCCACAATGCAAAGCGTCGGAAGGACAATTTGAAAGGTATTCT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAAATCCTTACTTTTAACCTAAAACTTTGAGTGATAAAGGCACCTGTGGCTCTTCAAGGGCTTCGATTAGCGTATAGAAATCTGTCCATGCTGATCCAGAGCGAAAGACCTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTGAATTCGGGATCTAGAAAAATAGGACATTTAAATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGCGGGCATACGGTAGACGATGATAGGTAAGCAAACACCGCGGCGGCAAAGTGCACAGAATGAAAGGTTGTGTGATTTTTTTCAGGTTTTTCAAACGGATTTTGAGGGGAATTAGCTGAAAAATAGCAAAAACACAGGAGAGGACACATTAGAGAATTTCTTGCAATTAGAAACATTCCAGAATTTTTTGATAATCATACCTAACAACACATCAGCACATATTCCTTCTAAATCCCTTTTTCTCGCATTCGTAATATCTTTCTCTGCCACAATGCAAAGCGTCGGAAGGACAATTTGAAAGGTATTCTGGTCAACGAGTCGCATGTGTCTGAAATTCAGTCATTCAGAATATTAAGAAAAAAAAAATCATTAAGTACGCCAGATAATCCGCAAGTTGCTCATCGCCATCGACATTTTCAGCTCGTTGGCTCCAATTTTCTCGAATTGAAGATTCCGCCACGACGACGTCATCTGATGACATCTTCTGATAATATGATCGGTTTTATAAAAATTTAGCTGTATTATGCTTGTCTGAGAAAAAAAAGGTTGAGACGCAGAGAAAAAGTGTCTGCGTCTCCACCGTTTGTGTGCTATTTAGGCTCTCCGCTTCGATATCTCTACCGTATTCAGACTGCAAAAAATACTCTTAACGTTTTTTTTCTCAGACAAGCATAATAAAAACGATATTCAATTGGTTTCCGTAGATTCCAAAAAAAGTAGAGAAAAAAGAGATAATGGGTGAAATCCTAATCACTAAA</canonical>
            <polymorphic>CTGAAATCCTTACTTTTAACCTAAAACTTTGAGTGATAAAGGCACCTGTGGCTCTTCAAGGGCTTCGATTAGCGTATAGAAATCTGTCCATGCTGATCCAGAGCGAAAGACCTTGAGACAGGCAAGAACTGCTCGTCGGGATGGCCGACTGAATTCGGGATCTAGAAAAATAGGACATTTAAATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGCGGGCATACGGTAGACGATGATAGGTAAGCAAACACCGCGGCGGCAAAGTGCACAGAATGAAAGGTTGTGTGATTTTTTTCAGGTTTTTCAAACGGATTTTGAGGGGAATTAGCTGAAAAATAGCAAAAACACAGGAGAGGACACATTAGAGAATTTCTTGCAATTAGAAACATTCCAGAATTTTTTGATAATCATACCTAACAACACATCAGCACATATTCCTTCTAAATCCCTTTTTCTCGCATTCGTAATATYTTTCTCTGCCACAATGCAAAGCGTCGGAAGGACAATTTGAAAGGTATTCTGGTCAACGAGTCGCATGTGTCTGAAATTCAGTCATTCAGAATATTAAGAAAAAAAAAATCATTAAGTACGCCAGATAATCCGCAAGTTGCTCATCGCCATCGACATTTTCAGCTCGTTGGCTCCAATTTTCTCGAATTGAAGATTCCGCCACGACGACGTCATCTGATGACATCTTCTGATAATATGATCGGTTTTATAAAAATTTAGCTGTATTATGCTTGTCTGAGAAAAAAAAGGTTGAGACGCAGAGAAAAAGTGTCTGCGTCTCCACCGTTTGTGTGCTATTTAGGCTCTCCGCTTCGATATCTCTACCGTATTCAGACTGCAAAAAATACTCTTAACGTTTTTTTTCTCAGACAAGCATAATAAAAACGATATTCAATTGGTTTCCGTAGATTCCAAAAAAAGTAGAGAAAAAAGAGATAATGGGTGAAATCCTAATCACTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGAGGACACATTAGAGAATTT</pcr_primer_p1>
		<pcr_primer_p2>TTATCTGGCGTACTTAATGATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAGAGGACACATTAGAGAATTTCTTGCAATTAGAAACATTCCAGAATTTTTTGATAATCATACCTAACAACACATCAGCACATATTCCTTCTAAATCCCTTTTTCTCGCATTCGTAATATCTTTCTCTGCCACAATGCAAAGCGTCGGAAGGACAATTTGAAAGGTATTCTGGTCAACGAGTCGCATGTGTCTGAAATTCAGTCATTCAGAATATTAAGAAAAAAAAAATCATTAAGTACGCCAGATAA</canonical_amplicon>
		<polymorphic_amplicon>GGAGAGGACACATTAGAGAATTTCTTGCAATTAGAAACATTCCAGAATTTTTTGATAATCATACCTAACAACACATCAGCACATATTCCTTCTAAATCCCTTTTTCTCGCATTCGTAATATYTTTCTCTGCCACAATGCAAAGCGTCGGAAGGACAATTTGAAAGGTATTCTGGTCAACGAGTCGCATGTGTCTGAAATTCAGTCATTCAGAATATTAAGAAAAAAAAAATCATTAAGTACGCCAGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16723</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>7302</contig_pos>
        <strand>+</strand>
        <context>ATTAAGACTG[C/T]AAATCAAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCAAATGTTAGAAAATTTATACTAAGAAACACAAATATAATTAAGACTG</left_flank>
        <right_flank>AAATCAAGTTAAAAAGGTTTAAAATGACAAGGAAGTTGGAAAACCAGTAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTTTTGACCAACTGCAAAAAATGCAATGCAATTCCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAAAATTCAACAAAGACTTGGAATCGAATTCTGAATTTTCTAAGTCAAGTGGCGGTGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGAAAATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAGAAATTGCGGCGAATTAGAAATTTTTTCCCGACAGGCAGATGGAAGAGGTTTCGCAGCGCAAACGCTAGGTCGCCGAGTAAGTAAAAGCGCGCGCGTTTGAAAATCAGTTTCTAAATAAAAGAAGAAAGGAAGAAGGAAATCACGAAATAGGAACAAATAAGCTCAAATGTTAGAAAATTTATACTAAGAAACACAAATATAATTAAGACTGTAAATCAAGTTAAAAAGGTTTAAAATGACAAGGAAGTTGGAAAACCAGTATCAAACAATTTCACTTTTTTCTTCTCCTTGACCAAAACGGATGGCGTCTATCCAATATGATAGCGTGATCGCAATTTGTTCCGGTCGAATTTATCAATTCTTCTGATATCTAATTGTATTCAGGAATCGAATGTTTAAACAACAAATGCGGATAATTCAACGGTAAACTTTAAGCATACTTTTATTTTTTGTATTTAGAGTAGTTTTGTTCAAACTGTGAATTTTCGGTTTATTGAAACTTATTTTTCTTGGAATTTCAAGGTCAAAACAAACAGAAATCTTTTGGTACAAATAAAACGGATCTGTGGAAGAGAAACGCCGGTGGTCGTAGCCGAATGTCCCACAACGATAACTAACCTAAAAATACTTTATTTCCAGAATTTATTTTCGTCGATTTTTCCGTTATTTTTGCGCCCAAATAGTCGGAAAATCAGTATTTTTAAAATGAATA</canonical>
            <polymorphic>AGCTTTTGACCAACTGCAAAAAATGCAATGCAATTCCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAAAATTCAACAAAGACTTGGAATCGAATTCTGAATTTTCTAAGTCAAGTGGCGGTGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGAAAATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAGAAATTGCGGCGAATTAGAAATTTTTTCCCGACAGGCAGATGGAAGAGGTTTCGCAGCGCAAACGCTAGGTCGCCGAGTAAGTAAAAGCGCGCGCGTTTGAAAATCAGTTTCTAAATAAAAGAAGAAAGGAAGAAGGAAATCACGAAATAGGAACAAATAAGCTCAAATGTTAGAAAATTTATACTAAGAAACACAAATATAATTAAGACTGYAAATCAAGTTAAAAAGGTTTAAAATGACAAGGAAGTTGGAAAACCAGTATCAAACAATTTCACTTTTTTCTTCTCCTTGACCAAAACGGATGGCGTCTATCCAATATGATAGCGTGATCGCAATTTGTTCCGGTCGAATTTATCAATTCTTCTGATATCTAATTGTATTCAGGAATCGAATGTTTAAACAACAAATGCGGATAATTCAACGGTAAACTTTAAGCATACTTTTATTTTTTGTATTTAGAGTAGTTTTGTTCAAACTGTGAATTTTCGGTTTATTGAAACTTATTTTTCTTGGAATTTCAAGGTCAAAACAAACAGAAATCTTTTGGTACAAATAAAACGGATCTGTGGAAGAGAAACGCCGGTGGTCGTAGCCGAATGTCCCACAACGATAACTAACCTAAAAATACTTTATTTCCAGAATTTATTTTCGTCGATTTTTCCGTTATTTTTGCGCCCAAATAGTCGGAAAATCAGTATTTTTAAAATGAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>498 235 213 54</canonical_bands>
                <polymorphic_bands>711 235 54</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATAGGAACAAATAAGCTCAA</pcr_primer_p1>
		<pcr_primer_p2>TTCGATTCCTGAATACAATTAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAATAGGAACAAATAAGCTCAAATGTTAGAAAATTTATACTAAGAAACACAAATATAATTAAGACTGTAAATCAAGTTAAAAAGGTTTAAAATGACAAGGAAGTTGGAAAACCAGTATCAAACAATTTCACTTTTTTCTTCTCCTTGACCAAAACGGATGGCGTCTATCCAATATGATAGCGTGATCGCAATTTGTTCCGGTCGAATTTATCAATTCTTCTGATATCTAATTGTATTCAGGAATCGAA</canonical_amplicon>
		<polymorphic_amplicon>GAAATAGGAACAAATAAGCTCAAATGTTAGAAAATTTATACTAAGAAACACAAATATAATTAAGACTGYAAATCAAGTTAAAAAGGTTTAAAATGACAAGGAAGTTGGAAAACCAGTATCAAACAATTTCACTTTTTTCTTCTCCTTGACCAAAACGGATGGCGTCTATCCAATATGATAGCGTGATCGCAATTTGTTCCGGTCGAATTTATCAATTCTTCTGATATCTAATTGTATTCAGGAATCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16724</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>7119</contig_pos>
        <strand>+</strand>
        <context>AATTTTTTCC[C/T]GACAGGCAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATCAACAACATAAACGCTAGAAATTGCGGCGAATTAGAAATTTTTTCC</left_flank>
        <right_flank>GACAGGCAGATGGAAGAGGTTTCGCAGCGCAAACGCTAGGTCGCCGAGTA</right_flank>
        <qual_score>134</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGAGTTCACTTCAGCATGATACATGCTATCCCCGAAGAGTTTTTCCAAGCTATCCTTAATTTCCAGCAAATCGAATTTGTCGGTAAAGTTGAAGGTACGACCATCATAATTGAAATCATTCAAGCCATGGACACTGATCACCATCAAGGCCTTCGGTTTTTCAAACAACGTACTAGACGATAGCTTTTGACCAACTGCAAAAAATGCAATGCAATTCCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAAAATTCAACAAAGACTTGGAATCGAATTCTGAATTTTCTAAGTCAAGTGGCGGTGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGAAAATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAGAAATTGCGGCGAATTAGAAATTTTTTCCCGACAGGCAGATGGAAGAGGTTTCGCAGCGCAAACGCTAGGTCGCCGAGTAAGTAAAAGCGCGCGCGTTTGAAAATCAGTTTCTAAATAAAAGAAGAAAGGAAGAAGGAAATCACGAAATAGGAACAAATAAGCTCAAATGTTAGAAAATTTATACTAAGAAACACAAATATAATTAAGACTGTAAATCAAGTTAAAAAGGTTTAAAATGACAAGGAAGTTGGAAAACCAGTATCAAACAATTTCACTTTTTTCTTCTCCTTGACCAAAACGGATGGCGTCTATCCAATATGATAGCGTGATCGCAATTTGTTCCGGTCGAATTTATCAATTCTTCTGATATCTAATTGTATTCAGGAATCGAATGTTTAAACAACAAATGCGGATAATTCAACGGTAAACTTTAAGCATACTTTTATTTTTTGTATTTAGAGTAGTTTTGTTCAAACTGTGAATTTTCGGTTTATTGAAACTTATTTTTCTTGGAATTTCAAGGTCAAAA</canonical>
            <polymorphic>GAGGAGTTCACTTCAGCATGATACATGCTATCCCCGAAGAGTTTTTCCAAGCTATCCTTAATTTCCAGCAAATCGAATTTGTCGGTAAAGTTGAAGGTACGACCATCATAATTGAAATCATTCAAGCCATGGACACTGATCACCATCAAGGCCTTCGGTTTTTCAAACAACGTACTAGACGATAGCTTTTGACCAACTGCAAAAAATGCAATGCAATTCCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAAAATTCAACAAAGACTTGGAATCGAATTCTGAATTTTCTAAGTCAAGTGGCGGTGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGAAAATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAGAAATTGCGGCGAATTAGAAATTTTTTCCYGACAGGCAGATGGAAGAGGTTTCGCAGCGCAAACGCTAGGTCGCCGAGTAAGTAAAAGCGCGCGCGTTTGAAAATCAGTTTCTAAATAAAAGAAGAAAGGAAGAAGGAAATCACGAAATAGGAACAAATAAGCTCAAATGTTAGAAAATTTATACTAAGAAACACAAATATAATTAAGACTGTAAATCAAGTTAAAAAGGTTTAAAATGACAAGGAAGTTGGAAAACCAGTATCAAACAATTTCACTTTTTTCTTCTCCTTGACCAAAACGGATGGCGTCTATCCAATATGATAGCGTGATCGCAATTTGTTCCGGTCGAATTTATCAATTCTTCTGATATCTAATTGTATTCAGGAATCGAATGTTTAAACAACAAATGCGGATAATTCAACGGTAAACTTTAAGCATACTTTTATTTTTTGTATTTAGAGTAGTTTTGTTCAAACTGTGAATTTTCGGTTTATTGAAACTTATTTTTCTTGGAATTTCAAGGTCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGAATTTTCTAAGTCAAGTGG</pcr_primer_p1>
		<pcr_primer_p2>TTTACTTACTCGGCGACCTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTGAATTTTCTAAGTCAAGTGGCGGTGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGAAAATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAGAAATTGCGGCGAATTAGAAATTTTTTCCCGACAGGCAGATGGAAGAGGTTTCGCAGCGCAAACGCTAGGTCGCCGAGTAAGTAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTGAATTTTCTAAGTCAAGTGGCGGTGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGAAAATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAGAAATTGCGGCGAATTAGAAATTTTTTCCYGACAGGCAGATGGAAGAGGTTTCGCAGCGCAAACGCTAGGTCGCCGAGTAAGTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16725</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>7091</contig_pos>
        <strand>+</strand>
        <context>TAAACGCTAG[A/G]AATTGCGGCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAG</left_flank>
        <right_flank>AATTGCGGCGAATTAGAAATTTTTTCCCGACAGGCAGATGGAAGAGGTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGAAATTAGGTGAACCGAAAATGCCCGAGGAGTTCACTTCAGCATGATACATGCTATCCCCGAAGAGTTTTTCCAAGCTATCCTTAATTTCCAGCAAATCGAATTTGTCGGTAAAGTTGAAGGTACGACCATCATAATTGAAATCATTCAAGCCATGGACACTGATCACCATCAAGGCCTTCGGTTTTTCAAACAACGTACTAGACGATAGCTTTTGACCAACTGCAAAAAATGCAATGCAATTCCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAAAATTCAACAAAGACTTGGAATCGAATTCTGAATTTTCTAAGTCAAGTGGCGGTGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGAAAATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAGAAATTGCGGCGAATTAGAAATTTTTTCCCGACAGGCAGATGGAAGAGGTTTCGCAGCGCAAACGCTAGGTCGCCGAGTAAGTAAAAGCGCGCGCGTTTGAAAATCAGTTTCTAAATAAAAGAAGAAAGGAAGAAGGAAATCACGAAATAGGAACAAATAAGCTCAAATGTTAGAAAATTTATACTAAGAAACACAAATATAATTAAGACTGTAAATCAAGTTAAAAAGGTTTAAAATGACAAGGAAGTTGGAAAACCAGTATCAAACAATTTCACTTTTTTCTTCTCCTTGACCAAAACGGATGGCGTCTATCCAATATGATAGCGTGATCGCAATTTGTTCCGGTCGAATTTATCAATTCTTCTGATATCTAATTGTATTCAGGAATCGAATGTTTAAACAACAAATGCGGATAATTCAACGGTAAACTTTAAGCATACTTTTATTTTTTGTATTTAGAGTAGTTTTGTTCAAACTGTGAATTTTCGGTTTATTGAAACT</canonical>
            <polymorphic>CTTGAAATTAGGTGAACCGAAAATGCCCGAGGAGTTCACTTCAGCATGATACATGCTATCCCCGAAGAGTTTTTCCAAGCTATCCTTAATTTCCAGCAAATCGAATTTGTCGGTAAAGTTGAAGGTACGACCATCATAATTGAAATCATTCAAGCCATGGACACTGATCACCATCAAGGCCTTCGGTTTTTCAAACAACGTACTAGACGATAGCTTTTGACCAACTGCAAAAAATGCAATGCAATTCCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAAAATTCAACAAAGACTTGGAATCGAATTCTGAATTTTCTAAGTCAAGTGGCGGTGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGAAAATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAGRAATTGCGGCGAATTAGAAATTTTTTCCCGACAGGCAGATGGAAGAGGTTTCGCAGCGCAAACGCTAGGTCGCCGAGTAAGTAAAAGCGCGCGCGTTTGAAAATCAGTTTCTAAATAAAAGAAGAAAGGAAGAAGGAAATCACGAAATAGGAACAAATAAGCTCAAATGTTAGAAAATTTATACTAAGAAACACAAATATAATTAAGACTGTAAATCAAGTTAAAAAGGTTTAAAATGACAAGGAAGTTGGAAAACCAGTATCAAACAATTTCACTTTTTTCTTCTCCTTGACCAAAACGGATGGCGTCTATCCAATATGATAGCGTGATCGCAATTTGTTCCGGTCGAATTTATCAATTCTTCTGATATCTAATTGTATTCAGGAATCGAATGTTTAAACAACAAATGCGGATAATTCAACGGTAAACTTTAAGCATACTTTTATTTTTTGTATTTAGAGTAGTTTTGTTCAAACTGTGAATTTTCGGTTTATTGAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGAATTTTCTAAGTCAAGTGG</pcr_primer_p1>
		<pcr_primer_p2>TTTACTTACTCGGCGACCTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTGAATTTTCTAAGTCAAGTGGCGGTGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGAAAATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAGAAATTGCGGCGAATTAGAAATTTTTTCCCGACAGGCAGATGGAAGAGGTTTCGCAGCGCAAACGCTAGGTCGCCGAGTAAGTAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTGAATTTTCTAAGTCAAGTGGCGGTGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGAAAATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAGRAATTGCGGCGAATTAGAAATTTTTTCCCGACAGGCAGATGGAAGAGGTTTCGCAGCGCAAACGCTAGGTCGCCGAGTAAGTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16726</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>7031</contig_pos>
        <strand>+</strand>
        <context>WATTTTTGAA[A/G]AGAAAAATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGAAAATTTTTGAA</left_flank>
        <right_flank>AGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTGAATGTCTTGGTAATTTGGTTCGATCTCGATTTCGTCATCAGAAGGGGACTCTCTCTTGAAATTAGGTGAACCGAAAATGCCCGAGGAGTTCACTTCAGCATGATACATGCTATCCCCGAAGAGTTTTTCCAAGCTATCCTTAATTTCCAGCAAATCGAATTTGTCGGTAAAGTTGAAGGTACGACCATCATAATTGAAATCATTCAAGCCATGGACACTGATCACCATCAAGGCCTTCGGTTTTTCAAACAACGTACTAGACGATAGCTTTTGACCAACTGCAAAAAATGCAATGCAATTCCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAAAATTCAACAAAGACTTGGAATCGAATTCTGAATTTTCTAAGTCAAGTGGCGGTGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGAAAATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAGAAATTGCGGCGAATTAGAAATTTTTTCCCGACAGGCAGATGGAAGAGGTTTCGCAGCGCAAACGCTAGGTCGCCGAGTAAGTAAAAGCGCGCGCGTTTGAAAATCAGTTTCTAAATAAAAGAAGAAAGGAAGAAGGAAATCACGAAATAGGAACAAATAAGCTCAAATGTTAGAAAATTTATACTAAGAAACACAAATATAATTAAGACTGTAAATCAAGTTAAAAAGGTTTAAAATGACAAGGAAGTTGGAAAACCAGTATCAAACAATTTCACTTTTTTCTTCTCCTTGACCAAAACGGATGGCGTCTATCCAATATGATAGCGTGATCGCAATTTGTTCCGGTCGAATTTATCAATTCTTCTGATATCTAATTGTATTCAGGAATCGAATGTTTAAACAACAAATGCGGATAATTCAACGGTAAACTTTAAGCATACT</canonical>
            <polymorphic>GTTTTGAATGTCTTGGTAATTTGGTTCGATCTCGATTTCGTCATCAGAAGGGGACTCTCTCTTGAAATTAGGTGAACCGAAAATGCCCGAGGAGTTCACTTCAGCATGATACATGCTATCCCCGAAGAGTTTTTCCAAGCTATCCTTAATTTCCAGCAAATCGAATTTGTCGGTAAAGTTGAAGGTACGACCATCATAATTGAAATCATTCAAGCCATGGACACTGATCACCATCAAGGCCTTCGGTTTTTCAAACAACGTACTAGACGATAGCTTTTGACCAACTGCAAAAAATGCAATGCAATTCCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAAAATTCAACAAAGACTTGGAATCGAATTCTGAATTTTCTAAGTCAAGTGGCGGTGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGAAAATTTTTGAARAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAGAAATTGCGGCGAATTAGAAATTTTTTCCCGACAGGCAGATGGAAGAGGTTTCGCAGCGCAAACGCTAGGTCGCCGAGTAAGTAAAAGCGCGCGCGTTTGAAAATCAGTTTCTAAATAAAAGAAGAAAGGAAGAAGGAAATCACGAAATAGGAACAAATAAGCTCAAATGTTAGAAAATTTATACTAAGAAACACAAATATAATTAAGACTGTAAATCAAGTTAAAAAGGTTTAAAATGACAAGGAAGTTGGAAAACCAGTATCAAACAATTTCACTTTTTTCTTCTCCTTGACCAAAACGGATGGCGTCTATCCAATATGATAGCGTGATCGCAATTTGTTCCGGTCGAATTTATCAATTCTTCTGATATCTAATTGTATTCAGGAATCGAATGTTTAAACAACAAATGCGGATAATTCAACGGTAAACTTTAAGCATACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGATGATTTTATGAAACAAATA</pcr_primer_p1>
		<pcr_primer_p2>CTAGCGTTTATGTTGTTGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAAAATTCAACAAAGACTTGGAATCGAATTCTGAATTTTCTAAGTCAAGTGGCGGTGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGAAAATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAG</canonical_amplicon>
		<polymorphic_amplicon>CCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAAAATTCAACAAAGACTTGGAATCGAATTCTGAATTTTCTAAGTCAAGTGGCGGTGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGAAAATTTTTGAARAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16729</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>7005</contig_pos>
        <strand>+</strand>
        <context>CAGGCTGTAA[A/T]TTTAATTTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAA</left_flank>
        <right_flank>TTTAATTTTAGAGAAAATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAATAATTGCCGTCAGTTTATCCATGTTTTGAATGTCTTGGTAATTTGGTTCGATCTCGATTTCGTCATCAGAAGGGGACTCTCTCTTGAAATTAGGTGAACCGAAAATGCCCGAGGAGTTCACTTCAGCATGATACATGCTATCCCCGAAGAGTTTTTCCAAGCTATCCTTAATTTCCAGCAAATCGAATTTGTCGGTAAAGTTGAAGGTACGACCATCATAATTGAAATCATTCAAGCCATGGACACTGATCACCATCAAGGCCTTCGGTTTTTCAAACAACGTACTAGACGATAGCTTTTGACCAACTGCAAAAAATGCAATGCAATTCCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAAAATTCAACAAAGACTTGGAATCGAATTCTGAATTTTCTAAGTCAAGTGGCGGTGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGAAAATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAGAAATTGCGGCGAATTAGAAATTTTTTCCCGACAGGCAGATGGAAGAGGTTTCGCAGCGCAAACGCTAGGTCGCCGAGTAAGTAAAAGCGCGCGCGTTTGAAAATCAGTTTCTAAATAAAAGAAGAAAGGAAGAAGGAAATCACGAAATAGGAACAAATAAGCTCAAATGTTAGAAAATTTATACTAAGAAACACAAATATAATTAAGACTGTAAATCAAGTTAAAAAGGTTTAAAATGACAAGGAAGTTGGAAAACCAGTATCAAACAATTTCACTTTTTTCTTCTCCTTGACCAAAACGGATGGCGTCTATCCAATATGATAGCGTGATCGCAATTTGTTCCGGTCGAATTTATCAATTCTTCTGATATCTAATTGTATTCAGGAATCGAATGTTTAAACAACAAATGCGGATA</canonical>
            <polymorphic>CGAATAATTGCCGTCAGTTTATCCATGTTTTGAATGTCTTGGTAATTTGGTTCGATCTCGATTTCGTCATCAGAAGGGGACTCTCTCTTGAAATTAGGTGAACCGAAAATGCCCGAGGAGTTCACTTCAGCATGATACATGCTATCCCCGAAGAGTTTTTCCAAGCTATCCTTAATTTCCAGCAAATCGAATTTGTCGGTAAAGTTGAAGGTACGACCATCATAATTGAAATCATTCAAGCCATGGACACTGATCACCATCAAGGCCTTCGGTTTTTCAAACAACGTACTAGACGATAGCTTTTGACCAACTGCAAAAAATGCAATGCAATTCCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAAAATTCAACAAAGACTTGGAATCGAATTCTGAATTTTCTAAGTCAAGTGGCGGTGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAWTTTAATTTTAGAGAAAATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAGAAATTGCGGCGAATTAGAAATTTTTTCCCGACAGGCAGATGGAAGAGGTTTCGCAGCGCAAACGCTAGGTCGCCGAGTAAGTAAAAGCGCGCGCGTTTGAAAATCAGTTTCTAAATAAAAGAAGAAAGGAAGAAGGAAATCACGAAATAGGAACAAATAAGCTCAAATGTTAGAAAATTTATACTAAGAAACACAAATATAATTAAGACTGTAAATCAAGTTAAAAAGGTTTAAAATGACAAGGAAGTTGGAAAACCAGTATCAAACAATTTCACTTTTTTCTTCTCCTTGACCAAAACGGATGGCGTCTATCCAATATGATAGCGTGATCGCAATTTGTTCCGGTCGAATTTATCAATTCTTCTGATATCTAATTGTATTCAGGAATCGAATGTTTAAACAACAAATGCGGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>208 189 173 157 72 71 67 23 17 16 7</canonical_bands>
                <polymorphic_bands>208 189 173 157 88 72 67 23 16 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>157 105 82 71 69 67 66 55 48 43 38 34 25 23 16 16 16 15 12 10 8 7 7 5 5</canonical_bands>
                <polymorphic_bands>157 105 82 76 69 67 66 55 48 43 38 34 25 23 16 16 16 15 12 10 8 7 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGATGATTTTATGAAACAAATA</pcr_primer_p1>
		<pcr_primer_p2>CTAGCGTTTATGTTGTTGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAAAATTCAACAAAGACTTGGAATCGAATTCTGAATTTTCTAAGTCAAGTGGCGGTGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGAAAATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAG</canonical_amplicon>
		<polymorphic_amplicon>CCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAAAATTCAACAAAGACTTGGAATCGAATTCTGAATTTTCTAAGTCAAGTGGCGGTGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAWTTTAATTTTAGAGAAAATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16730</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>6955</contig_pos>
        <strand>+</strand>
        <context>CAAGTGGCGG[C/T]GCATCGTCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAACAAAGACTTGGAATCGAATTCTGAATTTTCTAAGTCAAGTGGCGG</left_flank>
        <right_flank>GCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGAATGCGGTAATAGTCGATGACGTTGGCTTGTTTTCGATCTTTTACCCGAATAATTGCCGTCAGTTTATCCATGTTTTGAATGTCTTGGTAATTTGGTTCGATCTCGATTTCGTCATCAGAAGGGGACTCTCTCTTGAAATTAGGTGAACCGAAAATGCCCGAGGAGTTCACTTCAGCATGATACATGCTATCCCCGAAGAGTTTTTCCAAGCTATCCTTAATTTCCAGCAAATCGAATTTGTCGGTAAAGTTGAAGGTACGACCATCATAATTGAAATCATTCAAGCCATGGACACTGATCACCATCAAGGCCTTCGGTTTTTCAAACAACGTACTAGACGATAGCTTTTGACCAACTGCAAAAAATGCAATGCAATTCCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAAAATTCAACAAAGACTTGGAATCGAATTCTGAATTTTCTAAGTCAAGTGGCGGTGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGAAAATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAGAAATTGCGGCGAATTAGAAATTTTTTCCCGACAGGCAGATGGAAGAGGTTTCGCAGCGCAAACGCTAGGTCGCCGAGTAAGTAAAAGCGCGCGCGTTTGAAAATCAGTTTCTAAATAAAAGAAGAAAGGAAGAAGGAAATCACGAAATAGGAACAAATAAGCTCAAATGTTAGAAAATTTATACTAAGAAACACAAATATAATTAAGACTGTAAATCAAGTTAAAAAGGTTTAAAATGACAAGGAAGTTGGAAAACCAGTATCAAACAATTTCACTTTTTTCTTCTCCTTGACCAAAACGGATGGCGTCTATCCAATATGATAGCGTGATCGCAATTTGTTCCGGTCGAATTTATCAATTCTTCT</canonical>
            <polymorphic>GATGAATGCGGTAATAGTCGATGACGTTGGCTTGTTTTCGATCTTTTACCCGAATAATTGCCGTCAGTTTATCCATGTTTTGAATGTCTTGGTAATTTGGTTCGATCTCGATTTCGTCATCAGAAGGGGACTCTCTCTTGAAATTAGGTGAACCGAAAATGCCCGAGGAGTTCACTTCAGCATGATACATGCTATCCCCGAAGAGTTTTTCCAAGCTATCCTTAATTTCCAGCAAATCGAATTTGTCGGTAAAGTTGAAGGTACGACCATCATAATTGAAATCATTCAAGCCATGGACACTGATCACCATCAAGGCCTTCGGTTTTTCAAACAACGTACTAGACGATAGCTTTTGACCAACTGCAAAAAATGCAATGCAATTCCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAAAATTCAACAAAGACTTGGAATCGAATTCTGAATTTTCTAAGTCAAGTGGCGGYGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGAAAATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAGAAATTGCGGCGAATTAGAAATTTTTTCCCGACAGGCAGATGGAAGAGGTTTCGCAGCGCAAACGCTAGGTCGCCGAGTAAGTAAAAGCGCGCGCGTTTGAAAATCAGTTTCTAAATAAAAGAAGAAAGGAAGAAGGAAATCACGAAATAGGAACAAATAAGCTCAAATGTTAGAAAATTTATACTAAGAAACACAAATATAATTAAGACTGTAAATCAAGTTAAAAAGGTTTAAAATGACAAGGAAGTTGGAAAACCAGTATCAAACAATTTCACTTTTTTCTTCTCCTTGACCAAAACGGATGGCGTCTATCCAATATGATAGCGTGATCGCAATTTGTTCCGGTCGAATTTATCAATTCTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>477 363 124 22 9 5</canonical_bands>
                <polymorphic_bands>477 363 146 9 5</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>276 189 150 125 81 54 51 37 24 7 6</canonical_bands>
                <polymorphic_bands>282 189 150 125 81 54 51 37 24 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGATGATTTTATGAAACAAATA</pcr_primer_p1>
		<pcr_primer_p2>CTAGCGTTTATGTTGTTGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAAAATTCAACAAAGACTTGGAATCGAATTCTGAATTTTCTAAGTCAAGTGGCGGTGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGAAAATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAG</canonical_amplicon>
		<polymorphic_amplicon>CCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAAAATTCAACAAAGACTTGGAATCGAATTCTGAATTTTCTAAGTCAAGTGGCGGYGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGAAAATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16734</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>9510</contig_pos>
        <strand></strand>
        <context>acaggaatcg[A/G]rattaattar</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAATTATCTCGATTTCTGCGAAAGTTTCTGATATTTTTCACAGGAATCG</left_flank>
        <right_flank>AATTAATTAGCTTACAGTTGGCGGGTTGGTTGGGCATTACAGGAAATACG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAGCTCCCAATAGATTCAGCTGGTCATAATATGAACTTGGCTCATTACAAATGTATGGAAAAGATGATAAAACTTGCAAACTGGGACTACTTTGTTCTGATGCAGGTAAACCATTTGAATTGGGGGGGGGGGTTCAAAATTGAAAAAAAATGTATTTAAAAAAATTTGGTCGGAGTCCCCTCCTCAAAGGATCTCTGGTCCTACTTTTTCGATTCTCAGAATCACGACGTCATTGGAAAAACGGTCTACGAAATTTCACGGATTTTCGAGATCCTTGATGGAGCCAATGATATTGATATTGATAAGGAATTCGGTAGAGTTGAGGAGAGATTCGAATGGGATCTGAAGAAACTTCGACTGTTTCGAGATGGTTTGTATTTTTTTTTCATATTTTCCAATTACCGTATTCTCTTTAATCGAAGCCCATCCAAACGGTATATTTTGAGCTCAATTATCTCGATTTCTGCGAAAGTTTCTGATATTTTTCACAGGAATCGAAATTAATTAGCTTACAGTTGGCGGGTTGGTTGGGCATTACAGGAAATACGTTAAGTGGTTTTATTGTAGAATCAAGTCTTTCTTCCGGTTTTCTGAACCACACGCTAAGACTATCAAAAGGATCAGTTCAAGGATCTTTATCGCGAGAAGCAGTGGAATGGATGGTGAAGACAGTAAATCCAAAGAAGTATCTGGATCAATGGAATGAGGGGGTGAGTCTACTGACTTTAAAGCGAATTTACCGTATTTCCTGTATTGAGGCTCATTCGAACACTCACCTTTGAGCTCGAATACCTAAATTTCTATAAAAGATAAGAAAACACTGTAAACTGAAAAAATATTCATCATAATTCCACTAATATTTCATCAGTTGACAAATTTTGGACATATCTTATGGGAATCGAGATAATTGAGTTCAAAGTTGACGGATTGTGAGCTTCAATCAGAGAGAATACGGTAGGTGGTTTCAGTCTTACGGCGTCGACGAGCAATGGATTTCA</canonical>
            <polymorphic>AAGAGCTCCCAATAGATTCAGCTGGTCATAATATGAACTTGGCTCATTACAAATGTATGGAAAAGATGATAAAACTTGCAAACTGGGACTACTTTGTTCTGATGCAGGTAAACCATTTGAATTGGGGGGGGGGGTTCAAAATTGAAAAAAAATGTATTTAAAAAAATTTGGTCGGAGTCCCCTCCTCAAAGGATCTCTGGTCCTACTTTTTCGATTCTCAGAATCACGACGTCATTGGAAAAACGGTCTACGAAATTTCACGGATTTTCGAGATCCTTGATGGAGCCAATGATATTGATATTGATAAGGAATTCGGTAGAGTTGAGGAGAGATTCGAATGGGATCTGAAGAAACTTCGACTGTTTCGAGATGGTTTGTATTTTTTTTTCATATTTTCCAATTACCGTATTCTCTTTAATCGAAGCCCATCCAAACGGTATATTTTGAGCTCAATTATCTCGATTTCTGCGAAAGTTTCTGATATTTTTCACAGGAATCGRAATTAATTAGCTTACAGTTGGCGGGTTGGTTGGGCATTACAGGAAATACGTTAAGTGGTTTTATTGTAGAATCAAGTCTTTCTTCCGGTTTTCTGAACCACACGCTAAGACTATCAAAAGGATCAGTTCAAGGATCTTTATCGCGAGAAGCAGTGGAATGGATGGTGAAGACAGTAAATCCAAAGAAGTATCTGGATCAATGGAATGAGGGGGTGAGTCTACTGACTTTAAAGCGAATTTACCGTATTTCCTGTATTGAGGCTCATTCGAACACTCACCTTTGAGCTCGAATACCTAAATTTCTATAAAAGATAAGAAAACACTGTAAACTGAAAAAATATTCATCATAATTCCACTAATATTTCATCAGTTGACAAATTTTGGACATATCTTATGGGAATCGAGATAATTGAGTTCAAAGTTGACGGATTGTGAGCTTCAATCAGAGAGAATACGGTAGGTGGTTTCAGTCTTACGGCGTCGACGAGCAATGGATTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>270 212 114 80 66 57 54 40 38 22 20 18 9</canonical_bands>
                <polymorphic_bands>308 212 114 80 66 57 54 40 22 20 18 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCCAATTACCGTATTCTCT</pcr_primer_p1>
		<pcr_primer_p2>GATAAAGATCCTTGAACTGATCC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCCAATTACCGTATTCTCTTTAATCGAAGCCCATCCAAACGGTATATTTTGAGCTCAATTATCTCGATTTCTGCGAAAGTTTCTGATATTTTTCACAGGAATCGAAATTAATTAGCTTACAGTTGGCGGGTTGGTTGGGCATTACAGGAAATACGTTAAGTGGTTTTATTGTAGAATCAAGTCTTTCTTCCGGTTTTCTGAACCACACGCTAAGACTATCAAAAGGATCAGTTCAAGGATCTTTATC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCCAATTACCGTATTCTCTTTAATCGAAGCCCATCCAAACGGTATATTTTGAGCTCAATTATCTCGATTTCTGCGAAAGTTTCTGATATTTTTCACAGGAATCGRAATTAATTAGCTTACAGTTGGCGGGTTGGTTGGGCATTACAGGAAATACGTTAAGTGGTTTTATTGTAGAATCAAGTCTTTCTTCCGGTTTTCTGAACCACACGCTAAGACTATCAAAAGGATCAGTTCAAGGATCTTTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16735</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>9511</contig_pos>
        <strand></strand>
        <context>caggaatcgr[A/G]attaattarc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATTATCTCGATTTCTGCGAAAGTTTCTGATATTTTTCACAGGAATCGA</left_flank>
        <right_flank>ATTAATTAGCTTACAGTTGGCGGGTTGGTTGGGCATTACAGGAAATACGT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGCTCCCAATAGATTCAGCTGGTCATAATATGAACTTGGCTCATTACAAATGTATGGAAAAGATGATAAAACTTGCAAACTGGGACTACTTTGTTCTGATGCAGGTAAACCATTTGAATTGGGGGGGGGGGTTCAAAATTGAAAAAAAATGTATTTAAAAAAATTTGGTCGGAGTCCCCTCCTCAAAGGATCTCTGGTCCTACTTTTTCGATTCTCAGAATCACGACGTCATTGGAAAAACGGTCTACGAAATTTCACGGATTTTCGAGATCCTTGATGGAGCCAATGATATTGATATTGATAAGGAATTCGGTAGAGTTGAGGAGAGATTCGAATGGGATCTGAAGAAACTTCGACTGTTTCGAGATGGTTTGTATTTTTTTTTCATATTTTCCAATTACCGTATTCTCTTTAATCGAAGCCCATCCAAACGGTATATTTTGAGCTCAATTATCTCGATTTCTGCGAAAGTTTCTGATATTTTTCACAGGAATCGAAATTAATTAGCTTACAGTTGGCGGGTTGGTTGGGCATTACAGGAAATACGTTAAGTGGTTTTATTGTAGAATCAAGTCTTTCTTCCGGTTTTCTGAACCACACGCTAAGACTATCAAAAGGATCAGTTCAAGGATCTTTATCGCGAGAAGCAGTGGAATGGATGGTGAAGACAGTAAATCCAAAGAAGTATCTGGATCAATGGAATGAGGGGGTGAGTCTACTGACTTTAAAGCGAATTTACCGTATTTCCTGTATTGAGGCTCATTCGAACACTCACCTTTGAGCTCGAATACCTAAATTTCTATAAAAGATAAGAAAACACTGTAAACTGAAAAAATATTCATCATAATTCCACTAATATTTCATCAGTTGACAAATTTTGGACATATCTTATGGGAATCGAGATAATTGAGTTCAAAGTTGACGGATTGTGAGCTTCAATCAGAGAGAATACGGTAGGTGGTTTCAGTCTTACGGCGTCGACGAGCAATGGATTTCAA</canonical>
            <polymorphic>AGAGCTCCCAATAGATTCAGCTGGTCATAATATGAACTTGGCTCATTACAAATGTATGGAAAAGATGATAAAACTTGCAAACTGGGACTACTTTGTTCTGATGCAGGTAAACCATTTGAATTGGGGGGGGGGGTTCAAAATTGAAAAAAAATGTATTTAAAAAAATTTGGTCGGAGTCCCCTCCTCAAAGGATCTCTGGTCCTACTTTTTCGATTCTCAGAATCACGACGTCATTGGAAAAACGGTCTACGAAATTTCACGGATTTTCGAGATCCTTGATGGAGCCAATGATATTGATATTGATAAGGAATTCGGTAGAGTTGAGGAGAGATTCGAATGGGATCTGAAGAAACTTCGACTGTTTCGAGATGGTTTGTATTTTTTTTTCATATTTTCCAATTACCGTATTCTCTTTAATCGAAGCCCATCCAAACGGTATATTTTGAGCTCAATTATCTCGATTTCTGCGAAAGTTTCTGATATTTTTCACAGGAATCGARATTAATTAGCTTACAGTTGGCGGGTTGGTTGGGCATTACAGGAAATACGTTAAGTGGTTTTATTGTAGAATCAAGTCTTTCTTCCGGTTTTCTGAACCACACGCTAAGACTATCAAAAGGATCAGTTCAAGGATCTTTATCGCGAGAAGCAGTGGAATGGATGGTGAAGACAGTAAATCCAAAGAAGTATCTGGATCAATGGAATGAGGGGGTGAGTCTACTGACTTTAAAGCGAATTTACCGTATTTCCTGTATTGAGGCTCATTCGAACACTCACCTTTGAGCTCGAATACCTAAATTTCTATAAAAGATAAGAAAACACTGTAAACTGAAAAAATATTCATCATAATTCCACTAATATTTCATCAGTTGACAAATTTTGGACATATCTTATGGGAATCGAGATAATTGAGTTCAAAGTTGACGGATTGTGAGCTTCAATCAGAGAGAATACGGTAGGTGGTTTCAGTCTTACGGCGTCGACGAGCAATGGATTTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>231 118 94 89 89 62 56 53 51 49 31 28 25 20 4</canonical_bands>
                <polymorphic_bands>231 118 94 89 89 62 56 53 53 51 31 28 25 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCCAATTACCGTATTCTCT</pcr_primer_p1>
		<pcr_primer_p2>GATAAAGATCCTTGAACTGATCC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCCAATTACCGTATTCTCTTTAATCGAAGCCCATCCAAACGGTATATTTTGAGCTCAATTATCTCGATTTCTGCGAAAGTTTCTGATATTTTTCACAGGAATCGAAATTAATTAGCTTACAGTTGGCGGGTTGGTTGGGCATTACAGGAAATACGTTAAGTGGTTTTATTGTAGAATCAAGTCTTTCTTCCGGTTTTCTGAACCACACGCTAAGACTATCAAAAGGATCAGTTCAAGGATCTTTATC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCCAATTACCGTATTCTCTTTAATCGAAGCCCATCCAAACGGTATATTTTGAGCTCAATTATCTCGATTTCTGCGAAAGTTTCTGATATTTTTCACAGGAATCGARATTAATTAGCTTACAGTTGGCGGGTTGGTTGGGCATTACAGGAAATACGTTAAGTGGTTTTATTGTAGAATCAAGTCTTTCTTCCGGTTTTCTGAACCACACGCTAAGACTATCAAAAGGATCAGTTCAAGGATCTTTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16736</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>9568</contig_pos>
        <strand></strand>
        <context>ACGTTAAGTG[G/A]TTTTATTGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAGCTTACAGTTGGCGGGTTGGTTGGGCATTACAGGAAATACGTTAAGTG</left_flank>
        <right_flank>TTTTATTGTAGAATCAAGTCTTTCTTCCGGTTTTCTGAACCACACGCTAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAAAGATGATAAAACTTGCAAACTGGGACTACTTTGTTCTGATGCAGGTAAACCATTTGAATTGGGGGGGGGGGTTCAAAATTGAAAAAAAATGTATTTAAAAAAATTTGGTCGGAGTCCCCTCCTCAAAGGATCTCTGGTCCTACTTTTTCGATTCTCAGAATCACGACGTCATTGGAAAAACGGTCTACGAAATTTCACGGATTTTCGAGATCCTTGATGGAGCCAATGATATTGATATTGATAAGGAATTCGGTAGAGTTGAGGAGAGATTCGAATGGGATCTGAAGAAACTTCGACTGTTTCGAGATGGTTTGTATTTTTTTTTCATATTTTCCAATTACCGTATTCTCTTTAATCGAAGCCCATCCAAACGGTATATTTTGAGCTCAATTATCTCGATTTCTGCGAAAGTTTCTGATATTTTTCACAGGAATCGAAATTAATTAGCTTACAGTTGGCGGGTTGGTTGGGCATTACAGGAAATACGTTAAGTGGTTTTATTGTAGAATCAAGTCTTTCTTCCGGTTTTCTGAACCACACGCTAAGACTATCAAAAGGATCAGTTCAAGGATCTTTATCGCGAGAAGCAGTGGAATGGATGGTGAAGACAGTAAATCCAAAGAAGTATCTGGATCAATGGAATGAGGGGGTGAGTCTACTGACTTTAAAGCGAATTTACCGTATTTCCTGTATTGAGGCTCATTCGAACACTCACCTTTGAGCTCGAATACCTAAATTTCTATAAAAGATAAGAAAACACTGTAAACTGAAAAAATATTCATCATAATTCCACTAATATTTCATCAGTTGACAAATTTTGGACATATCTTATGGGAATCGAGATAATTGAGTTCAAAGTTGACGGATTGTGAGCTTCAATCAGAGAGAATACGGTAGGTGGTTTCAGTCTTACGGCGTCGACGAGCAATGGATTTCAACATTTCAAGCCAATGAGTTTTTGAAGATGCCTGGTCATTTCACGGATAAGTGTTTGG</canonical>
            <polymorphic>GGAAAAGATGATAAAACTTGCAAACTGGGACTACTTTGTTCTGATGCAGGTAAACCATTTGAATTGGGGGGGGGGGTTCAAAATTGAAAAAAAATGTATTTAAAAAAATTTGGTCGGAGTCCCCTCCTCAAAGGATCTCTGGTCCTACTTTTTCGATTCTCAGAATCACGACGTCATTGGAAAAACGGTCTACGAAATTTCACGGATTTTCGAGATCCTTGATGGAGCCAATGATATTGATATTGATAAGGAATTCGGTAGAGTTGAGGAGAGATTCGAATGGGATCTGAAGAAACTTCGACTGTTTCGAGATGGTTTGTATTTTTTTTTCATATTTTCCAATTACCGTATTCTCTTTAATCGAAGCCCATCCAAACGGTATATTTTGAGCTCAATTATCTCGATTTCTGCGAAAGTTTCTGATATTTTTCACAGGAATCGAAATTAATTAGCTTACAGTTGGCGGGTTGGTTGGGCATTACAGGAAATACGTTAAGTGRTTTTATTGTAGAATCAAGTCTTTCTTCCGGTTTTCTGAACCACACGCTAAGACTATCAAAAGGATCAGTTCAAGGATCTTTATCGCGAGAAGCAGTGGAATGGATGGTGAAGACAGTAAATCCAAAGAAGTATCTGGATCAATGGAATGAGGGGGTGAGTCTACTGACTTTAAAGCGAATTTACCGTATTTCCTGTATTGAGGCTCATTCGAACACTCACCTTTGAGCTCGAATACCTAAATTTCTATAAAAGATAAGAAAACACTGTAAACTGAAAAAATATTCATCATAATTCCACTAATATTTCATCAGTTGACAAATTTTGGACATATCTTATGGGAATCGAGATAATTGAGTTCAAAGTTGACGGATTGTGAGCTTCAATCAGAGAGAATACGGTAGGTGGTTTCAGTCTTACGGCGTCGACGAGCAATGGATTTCAACATTTCAAGCCAATGAGTTTTTGAAGATGCCTGGTCATTTCACGGATAAGTGTTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCCAATTACCGTATTCTCT</pcr_primer_p1>
		<pcr_primer_p2>GATAAAGATCCTTGAACTGATCC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCCAATTACCGTATTCTCTTTAATCGAAGCCCATCCAAACGGTATATTTTGAGCTCAATTATCTCGATTTCTGCGAAAGTTTCTGATATTTTTCACAGGAATCGAAATTAATTAGCTTACAGTTGGCGGGTTGGTTGGGCATTACAGGAAATACGTTAAGTGGTTTTATTGTAGAATCAAGTCTTTCTTCCGGTTTTCTGAACCACACGCTAAGACTATCAAAAGGATCAGTTCAAGGATCTTTATC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCCAATTACCGTATTCTCTTTAATCGAAGCCCATCCAAACGGTATATTTTGAGCTCAATTATCTCGATTTCTGCGAAAGTTTCTGATATTTTTCACAGGAATCGAAATTAATTAGCTTACAGTTGGCGGGTTGGTTGGGCATTACAGGAAATACGTTAAGTGRTTTTATTGTAGAATCAAGTCTTTCTTCCGGTTTTCTGAACCACACGCTAAGACTATCAAAAGGATCAGTTCAAGGATCTTTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16737</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>11961</contig_pos>
        <strand>+</strand>
        <context>TGACGACGAA[A/C]GAATAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATATAACTGCGAATGATTCGTTTTCTGAGCTATTAGATAATGACGACGAA</left_flank>
        <right_flank>GAATAAAAAAGATAAGAAACTACAAAAAGCATAAAATAGTTTGTCATTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAGCACAAGTCTCCGAGCACATTATTTTATGTATTAGCTAAGGCTTGTGGGAGGCTTGGCCAAGACTTGTAAAGTCATGAAATTGGTCGGCACTCGCAGCCGAGCATTTTGATTTTGATCATTTTGAGGAGTCCGGAGCTCGGCTCTCAAGTTTCCGATCACTTTGAAGCCTGTTTTTTCCCGTCTTCAGTCCAAAAAAATGGCCTAAATGGGATGTTTGTTAGAGATCGGCAAATAGCTGAAAAACTAGGAATTTTCGAAAAAATTCTGTGAATGCAAAATTTTCAATTTGGGCCTGTTTTGCACCGTGTAAAGTTTTCCAGACTCCTGAAAATTGTCAAAATGGTCGAAAATCAACTGAGAACCACATTTGTGTATATCTAATTGACCGATACTGTATTTTCACTAATTTTTAGGGTAACTGCCGACTGGTAGAGTCTGAAAATCATATAACTGCGAATGATTCGTTTTCTGAGCTATTAGATAATGACGACGAAAGAATAAAAAAGATAAGAAACTACAAAAAGCATAAAATAGTTTGTCATTTAAGTTTGTGTACATATCATGAAGAATACTTCTTTGAAATGGTTCATTGAAATACACAAAAATTACAAATGACAAATGATTCGAGAAATTTGATCAGCCACCCATTGCGAATTGGATTCAGTTGCAGTGAAATACCAATCCTCACTCTCTGCCAAATCTCCAAAATAGTTTGGCTGAGGTCCGATAGAGACTGCGATCGCACGGAACCCATATGTTGATTGCAATTGGTGGAGGTAGCTTGTGGCACTTCCATCGAACACTGCTCCATCACTGAAATGTACTTGATATCTTTGAATTTTTCTTTCTTCAGACTCACTCAACACCAACAGTAATCAAGACATTAGTGGTGGAATTTCCCGGGTCTCTTTCTTCCAGAATGTACTCGTATGCTCTGGAAAAAAAGATTTTGTTTGGTTTACCCTACAAATTAGGCAATGACTAACCTTTCAATT</canonical>
            <polymorphic>TCTAGCACAAGTCTCCGAGCACATTATTTTATGTATTAGCTAAGGCTTGTGGGAGGCTTGGCCAAGACTTGTAAAGTCATGAAATTGGTCGGCACTCGCAGCCGAGCATTTTGATTTTGATCATTTTGAGGAGTCCGGAGCTCGGCTCTCAAGTTTCCGATCACTTTGAAGCCTGTTTTTTCCCGTCTTCAGTCCAAAAAAATGGCCTAAATGGGATGTTTGTTAGAGATCGGCAAATAGCTGAAAAACTAGGAATTTTCGAAAAAATTCTGTGAATGCAAAATTTTCAATTTGGGCCTGTTTTGCACCGTGTAAAGTTTTCCAGACTCCTGAAAATTGTCAAAATGGTCGAAAATCAACTGAGAACCACATTTGTGTATATCTAATTGACCGATACTGTATTTTCACTAATTTTTAGGGTAACTGCCGACTGGTAGAGTCTGAAAATCATATAACTGCGAATGATTCGTTTTCTGAGCTATTAGATAATGACGACGAAMGAATAAAAAAGATAAGAAACTACAAAAAGCATAAAATAGTTTGTCATTTAAGTTTGTGTACATATCATGAAGAATACTTCTTTGAAATGGTTCATTGAAATACACAAAAATTACAAATGACAAATGATTCGAGAAATTTGATCAGCCACCCATTGCGAATTGGATTCAGTTGCAGTGAAATACCAATCCTCACTCTCTGCCAAATCTCCAAAATAGTTTGGCTGAGGTCCGATAGAGACTGCGATCGCACGGAACCCATATGTTGATTGCAATTGGTGGAGGTAGCTTGTGGCACTTCCATCGAACACTGCTCCATCACTGAAATGTACTTGATATCTTTGAATTTTTCTTTCTTCAGACTCACTCAACACCAACAGTAATCAAGACATTAGTGGTGGAATTTCCCGGGTCTCTTTCTTCCAGAATGTACTCGTATGCTCTGGAAAAAAAGATTTTGTTTGGTTTACCCTACAAATTAGGCAATGACTAACCTTTCAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATCATATAACTGCGAATGA</pcr_primer_p1>
		<pcr_primer_p2>AGTGAGGATTGGTATTTCACTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GAAAATCATATAACTGCGAATGATTCGTTTTCTGAGCTATTAGATAATGACGACGAAAGAATAAAAAAGATAAGAAACTACAAAAAGCATAAAATAGTTTGTCATTTAAGTTTGTGTACATATCATGAAGAATACTTCTTTGAAATGGTTCATTGAAATACACAAAAATTACAAATGACAAATGATTCGAGAAATTTGATCAGCCACCCATTGCGAATTGGATTCAGTTGCAGTGAAATACCAATCCTCACT</canonical_amplicon>
		<polymorphic_amplicon>GAAAATCATATAACTGCGAATGATTCGTTTTCTGAGCTATTAGATAATGACGACGAAMGAATAAAAAAGATAAGAAACTACAAAAAGCATAAAATAGTTTGTCATTTAAGTTTGTGTACATATCATGAAGAATACTTCTTTGAAATGGTTCATTGAAATACACAAAAATTACAAATGACAAATGATTCGAGAAATTTGATCAGCCACCCATTGCGAATTGGATTCAGTTGCAGTGAAATACCAATCCTCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16739</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>38539</contig_pos>
        <strand>+</strand>
        <context>GATAATTAGA[A/G]AAAGGACTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATTAATTATGTGAACATAGTAGGAGAACAGGAAAAAAAGATAATTAGA</left_flank>
        <right_flank>AAAGGACTAGAGACCCGTGTTTTTGGAGATGAACTGGATGGGCAAGTGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAATTATCTCGGTTACTGTAAGAGATATGGAAAATTTGTCAACTGATACAATGCTTATCATAATATCATCAACATTTCTCAGGTTAACAGATTTTTGATATCTCTTTTGGAAATTGGGATAATTGAGATCGTATAGAGTGGCCTAAATTAGAGTATTTATGGTTTCTCTGAATTTTCAGACAGCGGTCACCAAGTGTCGTACTAAAGAACTGAAACGTCTTTCAGAGAAGAAAAGAAGACAATTGTTGTTGTTTTGGCATCAACGTCCTCTGTTCTCACTCTGGCTCACGGTGTTTCTCCGGGGGAATCCAATTAAAATGAAAAGAAGCGTCCGGCGACTTCTTCTAAAGTCTTCAAGAATAGTCATTTGTTGTCTAATGAGGAAAAGAGCAAATTTTGTATCTGCTTTTCTTGCTGGAAAAGGGATTTAGAAGATCCAGGGGATCGACATTAATTATGTGAACATAGTAGGAGAACAGGAAAAAAAGATAATTAGAGAAAGGACTAGAGACCCGTGTTTTTGGAGATGAACTGGATGGGCAAGTGAGTAAAATGACTAGGAATTTGTGGTCATAATGATAAAAATAGAAATATCGGATTACAAAAATCATAAAATATTGATGAATCAATAAGACGAGATCTGTGGGAAAACTCGGCACCTGTTTTTTATTGCAAATTCTACAAATTTTAGGAGACTAAAGCTGTTCTGGTCTGACTTCAATGCAGAAAATTCGAGCTTAGGCTCGGCAGAAAAATCCTTAAAGGTGCATTTATAGGAGCAGGTACCGTAAACACTCTAATAGAACGCCACCCCTAACTTTCCTTTTTGAGCTAATTTATCTCTATTCCTGTGAAAGATATCAAAAAGTGGCCATTTGAAAAAATGTTTATCATGTGATTACTTTTTGAAATCTTTTACGGAAACCGAGATAAATTGGTTCAAAGGTGATTGTTACCGGTGGCGTTCTACATTTTTCGAAAATGACTCATTTTCTGGT</canonical>
            <polymorphic>CTCAATTATCTCGGTTACTGTAAGAGATATGGAAAATTTGTCAACTGATACAATGCTTATCATAATATCATCAACATTTCTCAGGTTAACAGATTTTTGATATCTCTTTTGGAAATTGGGATAATTGAGATCGTATAGAGTGGCCTAAATTAGAGTATTTATGGTTTCTCTGAATTTTCAGACAGCGGTCACCAAGTGTCGTACTAAAGAACTGAAACGTCTTTCAGAGAAGAAAAGAAGACAATTGTTGTTGTTTTGGCATCAACGTCCTCTGTTCTCACTCTGGCTCACGGTGTTTCTCCGGGGGAATCCAATTAAAATGAAAAGAAGCGTCCGGCGACTTCTTCTAAAGTCTTCAAGAATAGTCATTTGTTGTCTAATGAGGAAAAGAGCAAATTTTGTATCTGCTTTTCTTGCTGGAAAAGGGATTTAGAAGATCCAGGGGATCGACATTAATTATGTGAACATAGTAGGAGAACAGGAAAAAAAGATAATTAGARAAAGGACTAGAGACCCGTGTTTTTGGAGATGAACTGGATGGGCAAGTGAGTAAAATGACTAGGAATTTGTGGTCATAATGATAAAAATAGAAATATCGGATTACAAAAATCATAAAATATTGATGAATCAATAAGACGAGATCTGTGGGAAAACTCGGCACCTGTTTTTTATTGCAAATTCTACAAATTTTAGGAGACTAAAGCTGTTCTGGTCTGACTTCAATGCAGAAAATTCGAGCTTAGGCTCGGCAGAAAAATCCTTAAAGGTGCATTTATAGGAGCAGGTACCGTAAACACTCTAATAGAACGCCACCCCTAACTTTCCTTTTTGAGCTAATTTATCTCTATTCCTGTGAAAGATATCAAAAAGTGGCCATTTGAAAAAATGTTTATCATGTGATTACTTTTTGAAATCTTTTACGGAAACCGAGATAAATTGGTTCAAAGGTGATTGTTACCGGTGGCGTTCTACATTTTTCGAAAATGACTCATTTTCTGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTTGTATCTGCTTTTCTTG</pcr_primer_p1>
		<pcr_primer_p2>CAGATCTCGTCTTATTGATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAATTTTGTATCTGCTTTTCTTGCTGGAAAAGGGATTTAGAAGATCCAGGGGATCGACATTAATTATGTGAACATAGTAGGAGAACAGGAAAAAAAGATAATTAGAGAAAGGACTAGAGACCCGTGTTTTTGGAGATGAACTGGATGGGCAAGTGAGTAAAATGACTAGGAATTTGTGGTCATAATGATAAAAATAGAAATATCGGATTACAAAAATCATAAAATATTGATGAATCAATAAGACGAGATCTG</canonical_amplicon>
		<polymorphic_amplicon>AAATTTTGTATCTGCTTTTCTTGCTGGAAAAGGGATTTAGAAGATCCAGGGGATCGACATTAATTATGTGAACATAGTAGGAGAACAGGAAAAAAAGATAATTAGARAAAGGACTAGAGACCCGTGTTTTTGGAGATGAACTGGATGGGCAAGTGAGTAAAATGACTAGGAATTTGTGGTCATAATGATAAAAATAGAAATATCGGATTACAAAAATCATAAAATATTGATGAATCAATAAGACGAGATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16745</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>49728</contig_pos>
        <strand></strand>
        <context>TCTTCTTTTT[T/C]CTATCTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CATGCACTAGACGATGCAAGTGCGCGCCAGACAAGAGTTTTCTTCTTTTT</left_flank>
        <right_flank>CTATCTTTTCGCAGAGGAATTTACGCGCGATATTCGAATATTGAGAGAGC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATATTTTATCAGATGACAAATTTTTGATATCTCTCATAGAAATTGAGATAATTGAACTCAAAGTGAATTTTTTTATAGCTTTCCATGGAATTTTTCAAAATGTGGTTAACCAAAAAATGGATTTCTTGCAACAGTCGATTTTTTTCGAAATTTCTGAATCAATTGATTACGACAAAGTCAGCCTATTTGAAAACCCAAGAAACCGATTTTCAGGCTTTCCTTGCAAAAATTCCGGAATGAAAATACAACATTTTTTTCGAAACGAATTCCTTATCAATTTTTCTCATTTTATTAAAATTTGTCTAGTTAGTGATAAAAACGCTTTAAAAACTTTAAAAGTTCACAGCTTTCCCGGTACAAACCAAGAAAAAAACAGCCGGAAAAATCCGAAAAAAAACAACGCAAAAACAAGATAAACAAAAATTTCTTTTCTTATTTTCGTACACATGCACTAGACGATGCAAGTGCGCGCCAGACAAGAGTTTTCTTCTTTTTTCTATCTTTTCGCAGAGGAATTTACGCGCGATATTCGAATATTGAGAGAGCGGAGGTCTTTCGCAACAATTCAAAAAGTGTGCGCGCGGCGAAGAGAGCAAACAGGGTGGTGAGAGAAAAGAGGCATTTGAAACTTTGGACAACGTTTTCTCAGGCGTGAGAAAATCAAGAGTAATCATGTTTTATATAATTCTGTAGGGTTTTTCAAGAGCTACAATTTGAATGTTGATACATAAAAAACTAATAAGTTTGAAGAAAGTTATTCCCCTTATAATGTCAAAGGGAAGTAAGGTTTTGACTTGAAGGGTGTAACTCGGAAGCTAGACAATCAAACAAAGGGGTTTTCAGTGATTGTCTAGGGCTTGTTAAGAACTACAATTTGAACCCTGATTCGTAGGAAATTAATGAGCTTGAAGAAAGTTATACGTCTTTTAATGTCAACATGGAGAATAGTTTTGGTTTAAAGGAGGCCAGACACCAAAAAAAAAAGGTTTCCTGGTA</canonical>
            <polymorphic>AAAAATATTTTATCAGATGACAAATTTTTGATATCTCTCATAGAAATTGAGATAATTGAACTCAAAGTGAATTTTTTTATAGCTTTCCATGGAATTTTTCAAAATGTGGTTAACCAAAAAATGGATTTCTTGCAACAGTCGATTTTTTTCGAAATTTCTGAATCAATTGATTACGACAAAGTCAGCCTATTTGAAAACCCAAGAAACCGATTTTCAGGCTTTCCTTGCAAAAATTCCGGAATGAAAATACAACATTTTTTTCGAAACGAATTCCTTATCAATTTTTCTCATTTTATTAAAATTTGTCTAGTTAGTGATAAAAACGCTTTAAAAACTTTAAAAGTTCACAGCTTTCCCGGTACAAACCAAGAAAAAAACAGCCGGAAAAATCCGAAAAAAAACAACGCAAAAACAAGATAAACAAAAATTTCTTTTCTTATTTTCGTACACATGCACTAGACGATGCAAGTGCGCGCCAGACAAGAGTTTTCTTCTTTTTYCTATCTTTTCGCAGAGGAATTTACGCGCGATATTCGAATATTGAGAGAGCGGAGGTCTTTCGCAACAATTCAAAAAGTGTGCGCGCGGCGAAGAGAGCAAACAGGGTGGTGAGAGAAAAGAGGCATTTGAAACTTTGGACAACGTTTTCTCAGGCGTGAGAAAATCAAGAGTAATCATGTTTTATATAATTCTGTAGGGTTTTTCAAGAGCTACAATTTGAATGTTGATACATAAAAAACTAATAAGTTTGAAGAAAGTTATTCCCCTTATAATGTCAAAGGGAAGTAAGGTTTTGACTTGAAGGGTGTAACTCGGAAGCTAGACAATCAAACAAAGGGGTTTTCAGTGATTGTCTAGGGCTTGTTAAGAACTACAATTTGAACCCTGATTCGTAGGAAATTAATGAGCTTGAAGAAAGTTATACGTCTTTTAATGTCAACATGGAGAATAGTTTTGGTTTAAAGGAGGCCAGACACCAAAAAAAAAAGGTTTCCTGGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTTTCTTATTTTCGTACACA</pcr_primer_p1>
		<pcr_primer_p2>CATGATTACTCTTGATTTTCTCAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTTTCTTATTTTCGTACACATGCACTAGACGATGCAAGTGCGCGCCAGACAAGAGTTTTCTTCTTTTTTCTATCTTTTCGCAGAGGAATTTACGCGCGATATTCGAATATTGAGAGAGCGGAGGTCTTTCGCAACAATTCAAAAAGTGTGCGCGCGGCGAAGAGAGCAAACAGGGTGGTGAGAGAAAAGAGGCATTTGAAACTTTGGACAACGTTTTCTCAGGCGTGAGAAAATCAAGAGTAATCATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTTTCTTATTTTCGTACACATGCACTAGACGATGCAAGTGCGCGCCAGACAAGAGTTTTCTTCTTTTTYCTATCTTTTCGCAGAGGAATTTACGCGCGATATTCGAATATTGAGAGAGCGGAGGTCTTTCGCAACAATTCAAAAAGTGTGCGCGCGGCGAAGAGAGCAAACAGGGTGGTGAGAGAAAAGAGGCATTTGAAACTTTGGACAACGTTTTCTCAGGCGTGAGAAAATCAAGAGTAATCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16747</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>53928</contig_pos>
        <strand>+</strand>
        <context>CTCATTAGAT[C/G]AGAAGTATAt</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTTGAAGTTTCCAGGAATCAATTTCTATATTGTCGACTTCTCATTAGAT</left_flank>
        <right_flank>AGAAGTATATATTAGGTTGGCAGGAAAGTAACTGTCCCTTGTTTTATTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCTTCTGCCCACGTGGTCGATTGATAAGAGAAAATATTAGACATCTTCTCCTATATATTCACATCTTGTTTCCAATTAGAAATATTTCGTCTTGTACATATTGTGACATATTTTCTATTTTGATTGTTTTGTTGAATATGTTTTGGATGTTATATGTAGTAGGTTTGAATCGTGTGAAATGATAATAATGTGTATTCGAGTTTTCCAGTTTCAGTTAGTTTACAAAATAACTGTCTGAGCTTGGTTGTTGTTCTTCTACGAATTTCACGCTGAGATATGCATTTTCCAATTTAGGCTAGCTATAAGCAGTTTCGTTCGTTCCAGGATGAACGGTCCTAGTGTGGGTCCTGGGGTTTGGTAAGTTAGGATCGTGAACATTGGGAATTTGTTGGGATCAGCGGTCCATCGTGATACCGCTCTTCTCGGAAAGAGCGAGCATTATTAGTGCATTTGAAGTTTCCAGGAATCAATTTCTATATTGTCGACTTCTCATTAGATGAGAAGTATATATTAGGTTGGCAGGAAAGTAACTGTCCCTTGTTTTATTTGTGAATAATACAAAAGCAGGATTAATCCAAGATTAGCAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGTTTTTTAATTTTGTTCCTTATTCCTTCTTCCTTCTTCCTGATTTTTTTTTGTTATTCCTTTTCAAAACTTTAAACGTTCTAAATTGCCGCGTAACATTTTATTTGCACGGTTTTTCGGAAATTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTGTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGACAAATTAACTTTTTGTTCACTCAATTTGAAAAATTGTGGCCTTAAAAACTGATAATTCACAATTATGATTTTGTTTTTTAGTTTTTAATTTCTAGTTTGAGAGTTCCCTCTCCATTTTTCTTGT</canonical>
            <polymorphic>CCCTTCTGCCCACGTGGTCGATTGATAAGAGAAAATATTAGACATCTTCTCCTATATATTCACATCTTGTTTCCAATTAGAAATATTTCGTCTTGTACATATTGTGACATATTTTCTATTTTGATTGTTTTGTTGAATATGTTTTGGATGTTATATGTAGTAGGTTTGAATCGTGTGAAATGATAATAATGTGTATTCGAGTTTTCCAGTTTCAGTTAGTTTACAAAATAACTGTCTGAGCTTGGTTGTTGTTCTTCTACGAATTTCACGCTGAGATATGCATTTTCCAATTTAGGCTAGCTATAAGCAGTTTCGTTCGTTCCAGGATGAACGGTCCTAGTGTGGGTCCTGGGGTTTGGTAAGTTAGGATCGTGAACATTGGGAATTTGTTGGGATCAGCGGTCCATCGTGATACCGCTCTTCTCGGAAAGAGCGAGCATTATTAGTGCATTTGAAGTTTCCAGGAATCAATTTCTATATTGTCGACTTCTCATTAGATSAGAAGTATATATTAGGTTGGCAGGAAAGTAACTGTCCCTTGTTTTATTTGTGAATAATACAAAAGCAGGATTAATCCAAGATTAGCAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGTTTTTTAATTTTGTTCCTTATTCCTTCTTCCTTCTTCCTGATTTTTTTTTGTTATTCCTTTTCAAAACTTTAAACGTTCTAAATTGCCGCGTAACATTTTATTTGCACGGTTTTTCGGAAATTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTGTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGACAAATTAACTTTTTGTTCACTCAATTTGAAAAATTGTGGCCTTAAAAACTGATAATTCACAATTATGATTTTGTTTTTTAGTTTTTAATTTCTAGTTTGAGAGTTCCCTCTCCATTTTTCTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGAACATTGGGAATTTGTT</pcr_primer_p1>
		<pcr_primer_p2>CGTGCAAATAAAATGTTACG</pcr_primer_p2>
		<pcr_amplicon_size>414</pcr_amplicon_size>
		<canonical_amplicon>GTGAACATTGGGAATTTGTTGGGATCAGCGGTCCATCGTGATACCGCTCTTCTCGGAAAGAGCGAGCATTATTAGTGCATTTGAAGTTTCCAGGAATCAATTTCTATATTGTCGACTTCTCATTAGATGAGAAGTATATATTAGGTTGGCAGGAAAGTAACTGTCCCTTGTTTTATTTGTGAATAATACAAAAGCAGGATTAATCCAAGATTAGCAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGTTTTTTAATTTTGTTCCTTATTCCTTCTTCCTTCTTCCTGATTTTTTTTTGTTATTCCTTTTCAAAACTTTAAACGTTCTAAATTGCCGCGTAACATTTTATTTGCACG</canonical_amplicon>
		<polymorphic_amplicon>GTGAACATTGGGAATTTGTTGGGATCAGCGGTCCATCGTGATACCGCTCTTCTCGGAAAGAGCGAGCATTATTAGTGCATTTGAAGTTTCCAGGAATCAATTTCTATATTGTCGACTTCTCATTAGATSAGAAGTATATATTAGGTTGGCAGGAAAGTAACTGTCCCTTGTTTTATTTGTGAATAATACAAAAGCAGGATTAATCCAAGATTAGCAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGTTTTTTAATTTTGTTCCTTATTCCTTCTTCCTTCTTCCTGATTTTTTTTTGTTATTCCTTTTCAAAACTTTAAACGTTCTAAATTGCCGCGTAACATTTTATTTGCACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16748</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>53864</contig_pos>
        <strand></strand>
        <context>GGAAAGAGCG[A/G]RCATTATTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGTTGGGATCAGCGGTCCATCGTGATACCGCTCTTCTCGGAAAGAGCG</left_flank>
        <right_flank>GCATTATTAGTGCATTTGAAGTTTCCAGGAATCAATTTCTATATTGTCGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAAAGAGAAGAAACCTGATATTTTAATAAACGGCCAGTCACCCTCCTAATATTGAGGACTTCCCTTCTGCCCACGTGGTCGATTGATAAGAGAAAATATTAGACATCTTCTCCTATATATTCACATCTTGTTTCCAATTAGAAATATTTCGTCTTGTACATATTGTGACATATTTTCTATTTTGATTGTTTTGTTGAATATGTTTTGGATGTTATATGTAGTAGGTTTGAATCGTGTGAAATGATAATAATGTGTATTCGAGTTTTCCAGTTTCAGTTAGTTTACAAAATAACTGTCTGAGCTTGGTTGTTGTTCTTCTACGAATTTCACGCTGAGATATGCATTTTCCAATTTAGGCTAGCTATAAGCAGTTTCGTTCGTTCCAGGATGAACGGTCCTAGTGTGGGTCCTGGGGTTTGGTAAGTTAGGATCGTGAACATTGGGAATTTGTTGGGATCAGCGGTCCATCGTGATACCGCTCTTCTCGGAAAGAGCGAGCATTATTAGTGCATTTGAAGTTTCCAGGAATCAATTTCTATATTGTCGACTTCTCATTAGATGAGAAGTATATATTAGGTTGGCAGGAAAGTAACTGTCCCTTGTTTTATTTGTGAATAATACAAAAGCAGGATTAATCCAAGATTAGCAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGTTTTTTAATTTTGTTCCTTATTCCTTCTTCCTTCTTCCTGATTTTTTTTTGTTATTCCTTTTCAAAACTTTAAACGTTCTAAATTGCCGCGTAACATTTTATTTGCACGGTTTTTCGGAAATTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTGTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGACAAATTAACTTTTTGTTCACTCAATTTGAAAAATTGTGGCCTTAAAAACTGATAATTCAC</canonical>
            <polymorphic>TGAAAAAGAGAAGAAACCTGATATTTTAATAAACGGCCAGTCACCCTCCTAATATTGAGGACTTCCCTTCTGCCCACGTGGTCGATTGATAAGAGAAAATATTAGACATCTTCTCCTATATATTCACATCTTGTTTCCAATTAGAAATATTTCGTCTTGTACATATTGTGACATATTTTCTATTTTGATTGTTTTGTTGAATATGTTTTGGATGTTATATGTAGTAGGTTTGAATCGTGTGAAATGATAATAATGTGTATTCGAGTTTTCCAGTTTCAGTTAGTTTACAAAATAACTGTCTGAGCTTGGTTGTTGTTCTTCTACGAATTTCACGCTGAGATATGCATTTTCCAATTTAGGCTAGCTATAAGCAGTTTCGTTCGTTCCAGGATGAACGGTCCTAGTGTGGGTCCTGGGGTTTGGTAAGTTAGGATCGTGAACATTGGGAATTTGTTGGGATCAGCGGTCCATCGTGATACCGCTCTTCTCGGAAAGAGCGRGCATTATTAGTGCATTTGAAGTTTCCAGGAATCAATTTCTATATTGTCGACTTCTCATTAGATGAGAAGTATATATTAGGTTGGCAGGAAAGTAACTGTCCCTTGTTTTATTTGTGAATAATACAAAAGCAGGATTAATCCAAGATTAGCAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGTTTTTTAATTTTGTTCCTTATTCCTTCTTCCTTCTTCCTGATTTTTTTTTGTTATTCCTTTTCAAAACTTTAAACGTTCTAAATTGCCGCGTAACATTTTATTTGCACGGTTTTTCGGAAATTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTGTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGACAAATTAACTTTTTGTTCACTCAATTTGAAAAATTGTGGCCTTAAAAACTGATAATTCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTGTTCTTCTACGAATTTCAC</pcr_primer_p1>
		<pcr_primer_p2>AATGAGAAGTCGACAATATAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTTGTTCTTCTACGAATTTCACGCTGAGATATGCATTTTCCAATTTAGGCTAGCTATAAGCAGTTTCGTTCGTTCCAGGATGAACGGTCCTAGTGTGGGTCCTGGGGTTTGGTAAGTTAGGATCGTGAACATTGGGAATTTGTTGGGATCAGCGGTCCATCGTGATACCGCTCTTCTCGGAAAGAGCGAGCATTATTAGTGCATTTGAAGTTTCCAGGAATCAATTTCTATATTGTCGACTTCTCATT</canonical_amplicon>
		<polymorphic_amplicon>TGTTGTTCTTCTACGAATTTCACGCTGAGATATGCATTTTCCAATTTAGGCTAGCTATAAGCAGTTTCGTTCGTTCCAGGATGAACGGTCCTAGTGTGGGTCCTGGGGTTTGGTAAGTTAGGATCGTGAACATTGGGAATTTGTTGGGATCAGCGGTCCATCGTGATACCGCTCTTCTCGGAAAGAGCGRGCATTATTAGTGCATTTGAAGTTTCCAGGAATCAATTTCTATATTGTCGACTTCTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16749</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>129564</contig_pos>
        <strand></strand>
        <context>ACTACTCTGT[T/C]GAAAACTGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCTCATATAGGAACCAAGACAATTTAGCTCAAAGTGGAAAACTACTCTGT</left_flank>
        <right_flank>GAAAACTGGGGTGCAGTACAATTTGATCCCCAGGAAATCTGCATTAGAAG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGGCAGCTTCCTCCTCGCTTTGTTGGATCTGAATCGTTTCCTCCTTGAGTTTGAAGACGTCAACCTGACTTACCATGAGTAATATTGCACTGTCTGTTAGAGCACGAATACACCTTTTGGTCAGAAACACTTCTTCGGAAAAATGCTCCACAAGCCGCGCAACTGATGGCACCAAAATGATAACCCTCGGCTTTGTCCGAGCAAATTGAGCAGATCATTTCTTGAGGTGGAGCGCTGGAAAAAAGAAGTTTTCGGTGCAACAAGGTTCGAAGGTTAGGTATTAAGATTCTAAGATCCTAAGTTAGGACGTCTAGCAATTGGGTACTTTTTCTGAAGACAATTGGAGCTCAATTATCCCAACTTCTGTAAGAGATATAAACATTTTGTCAACTGATAAAATAATTGTGATATTATGATAAACAGTTTATCAGTTGACAACTTTTTGATATCTCATATAGGAACCAAGACAATTTAGCTCAAAGTGGAAAACTACTCTGTTGAAAACTGGGGTGCAGTACAATTTGATCCCCAGGAAATCTGCATTAGAAGTCATCCGATTAGACTAAAAATATTCTGGGTGCACTAAAGAAAACTAGAGCTTTAATTTTGCAGTTGAGACCTTTTTGTACAAATTCATTCAAATGATATATATCAAAATGTTTGTGACATTTTACAAAGCATTTTATCAGTTAACGGATTTTTTATATTTCTTATTGGAACCGAGATGATTGAGTGGAAAGTTGACGGGGTCGCTATTATCTCGGTGTTTTCCTGTTTCATAATGGCAATGAATACAGTTGAAGTATATTTTTTCACTGTAGCCATTCTTTGAGCTATTTTCAGTTTCACGCGCTCCAATTATTTCAGACCTTTTGACTAATAAAAATCAAGTTATTTTTCAATTCAAAATGGGTCAATTTAGCATCGCATAAAAATTTCTTTCTGTTTCAAAAGGCCCATAAAAATTGGGGAACAATGAATTGTTTAATAGTATCATCT</canonical>
            <polymorphic>CCGGCAGCTTCCTCCTCGCTTTGTTGGATCTGAATCGTTTCCTCCTTGAGTTTGAAGACGTCAACCTGACTTACCATGAGTAATATTGCACTGTCTGTTAGAGCACGAATACACCTTTTGGTCAGAAACACTTCTTCGGAAAAATGCTCCACAAGCCGCGCAACTGATGGCACCAAAATGATAACCCTCGGCTTTGTCCGAGCAAATTGAGCAGATCATTTCTTGAGGTGGAGCGCTGGAAAAAAGAAGTTTTCGGTGCAACAAGGTTCGAAGGTTAGGTATTAAGATTCTAAGATCCTAAGTTAGGACGTCTAGCAATTGGGTACTTTTTCTGAAGACAATTGGAGCTCAATTATCCCAACTTCTGTAAGAGATATAAACATTTTGTCAACTGATAAAATAATTGTGATATTATGATAAACAGTTTATCAGTTGACAACTTTTTGATATCTCATATAGGAACCAAGACAATTTAGCTCAAAGTGGAAAACTACTCTGTYGAAAACTGGGGTGCAGTACAATTTGATCCCCAGGAAATCTGCATTAGAAGTCATCCGATTAGACTAAAAATATTCTGGGTGCACTAAAGAAAACTAGAGCTTTAATTTTGCAGTTGAGACCTTTTTGTACAAATTCATTCAAATGATATATATCAAAATGTTTGTGACATTTTACAAAGCATTTTATCAGTTAACGGATTTTTTATATTTCTTATTGGAACCGAGATGATTGAGTGGAAAGTTGACGGGGTCGCTATTATCTCGGTGTTTTCCTGTTTCATAATGGCAATGAATACAGTTGAAGTATATTTTTTCACTGTAGCCATTCTTTGAGCTATTTTCAGTTTCACGCGCTCCAATTATTTCAGACCTTTTGACTAATAAAAATCAAGTTATTTTTCAATTCAAAATGGGTCAATTTAGCATCGCATAAAAATTTCTTTCTGTTTCAAAAGGCCCATAAAAATTGGGGAACAATGAATTGTTTAATAGTATCATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGGGTACTTTTTCTGAAGAC</pcr_primer_p1>
		<pcr_primer_p2>CATTATGAAACAGGAAAACACC</pcr_primer_p2>
		<pcr_amplicon_size>469</pcr_amplicon_size>
		<canonical_amplicon>AATTGGGTACTTTTTCTGAAGACAATTGGAGCTCAATTATCCCAACTTCTGTAAGAGATATAAACATTTTGTCAACTGATAAAATAATTGTGATATTATGATAAACAGTTTATCAGTTGACAACTTTTTGATATCTCATATAGGAACCAAGACAATTTAGCTCAAAGTGGAAAACTACTCTGTTGAAAACTGGGGTGCAGTACAATTTGATCCCCAGGAAATCTGCATTAGAAGTCATCCGATTAGACTAAAAATATTCTGGGTGCACTAAAGAAAACTAGAGCTTTAATTTTGCAGTTGAGACCTTTTTGTACAAATTCATTCAAATGATATATATCAAAATGTTTGTGACATTTTACAAAGCATTTTATCAGTTAACGGATTTTTTATATTTCTTATTGGAACCGAGATGATTGAGTGGAAAGTTGACGGGGTCGCTATTATCTCGGTGTTTTCCTGTTTCATAATG</canonical_amplicon>
		<polymorphic_amplicon>AATTGGGTACTTTTTCTGAAGACAATTGGAGCTCAATTATCCCAACTTCTGTAAGAGATATAAACATTTTGTCAACTGATAAAATAATTGTGATATTATGATAAACAGTTTATCAGTTGACAACTTTTTGATATCTCATATAGGAACCAAGACAATTTAGCTCAAAGTGGAAAACTACTCTGTYGAAAACTGGGGTGCAGTACAATTTGATCCCCAGGAAATCTGCATTAGAAGTCATCCGATTAGACTAAAAATATTCTGGGTGCACTAAAGAAAACTAGAGCTTTAATTTTGCAGTTGAGACCTTTTTGTACAAATTCATTCAAATGATATATATCAAAATGTTTGTGACATTTTACAAAGCATTTTATCAGTTAACGGATTTTTTATATTTCTTATTGGAACCGAGATGATTGAGTGGAAAGTTGACGGGGTCGCTATTATCTCGGTGTTTTCCTGTTTCATAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16751</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>137925</contig_pos>
        <strand>+</strand>
        <context>GTAAAATCCT[A/T]TCAGTGGAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAAAAACTATCGAAATAAAATTTGTCAATCTTATTTTTGTAAAATCCT</left_flank>
        <right_flank>TCAGTGGAAGGATCATACGTATTCAGATTTAAACAAATACTAAAATTTCA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCTAGGACCAACAAAACAATTTATCTAAAACATTTGGTTGCAGAATAAAGTATTTAAAACTGGAGATTCCGTGTCGGATTGTACAAAAGTTAGTGTTTGAGCAAAAAATTAAATCGCAACTTCCCCAAAAAAGTTTACTTCCAATTAAGTACTTTGAGTTGAAGAGACGCTAATACTGAAAAAAAAACAGTTTCGAAAACTTCATTTAATTATCTATTTTGAATTGAAAGTCAATGTCGTTATCAATCAGTTATCGAAGATATACGCTTACAGATTGTGTTAAATAAAGTTCAATTTCATAGTTTTATTGATGAAGAAGTGAATTTATGGGTGAACAAAAGTTACAAAACATTTTTCAGATTCCGAATTTTTAATCATATTCCAACGACTTCTGAAAACTTACTAGACCGAATTCACTTGAAAAGGGAATATTCTAACACGTGATTTAAAAAAAACTATCGAAATAAAATTTGTCAATCTTATTTTTGTAAAATCCTATCAGTGGAAGGATCATACGTATTCAGATTTAAACAAATACTAAAATTTCATAGGTCTCCGAAATTATAAAACTACACAAAAATAGTGATCGAAGAAATACATATTCGTCATAAAATGTTTTGGGAGGTTTTATTTCCTAGTTCACTTTTTTTTCGTGTTACAGGAGTTTTATAAGGTTAGTGTAGTTTAGATAGTTTAGTTTAGATATCATTACATGTTGAGGATGCCTGGTGGAACTGATTTGAAAAATTTCAGACAGAGCGTTCCATTTTTCAAGTTTGTCACTATTTTCAAAATTCTATAATACCGTAAAACCTGTATTGGAAGTCTTATCAAGTGTTTGGAACAGTAAAAAATAAATTTTACATTGAAACACTTGTTTAGAAAAAATTATATTATAGATCTTTCATTTTCTCTATTATTGAATCGGCTTGTATATAGTTTCTCCTAAAGCTTTCGAACTTTTGGCTGAAACTTTTGGCTTTTGGCTGAAAATCTTG</canonical>
            <polymorphic>TTCCTAGGACCAACAAAACAATTTATCTAAAACATTTGGTTGCAGAATAAAGTATTTAAAACTGGAGATTCCGTGTCGGATTGTACAAAAGTTAGTGTTTGAGCAAAAAATTAAATCGCAACTTCCCCAAAAAAGTTTACTTCCAATTAAGTACTTTGAGTTGAAGAGACGCTAATACTGAAAAAAAAACAGTTTCGAAAACTTCATTTAATTATCTATTTTGAATTGAAAGTCAATGTCGTTATCAATCAGTTATCGAAGATATACGCTTACAGATTGTGTTAAATAAAGTTCAATTTCATAGTTTTATTGATGAAGAAGTGAATTTATGGGTGAACAAAAGTTACAAAACATTTTTCAGATTCCGAATTTTTAATCATATTCCAACGACTTCTGAAAACTTACTAGACCGAATTCACTTGAAAAGGGAATATTCTAACACGTGATTTAAAAAAAACTATCGAAATAAAATTTGTCAATCTTATTTTTGTAAAATCCTWTCAGTGGAAGGATCATACGTATTCAGATTTAAACAAATACTAAAATTTCATAGGTCTCCGAAATTATAAAACTACACAAAAATAGTGATCGAAGAAATACATATTCGTCATAAAATGTTTTGGGAGGTTTTATTTCCTAGTTCACTTTTTTTTCGTGTTACAGGAGTTTTATAAGGTTAGTGTAGTTTAGATAGTTTAGTTTAGATATCATTACATGTTGAGGATGCCTGGTGGAACTGATTTGAAAAATTTCAGACAGAGCGTTCCATTTTTCAAGTTTGTCACTATTTTCAAAATTCTATAATACCGTAAAACCTGTATTGGAAGTCTTATCAAGTGTTTGGAACAGTAAAAAATAAATTTTACATTGAAACACTTGTTTAGAAAAAATTATATTATAGATCTTTCATTTTCTCTATTATTGAATCGGCTTGTATATAGTTTCTCCTAAAGCTTTCGAACTTTTGGCTGAAACTTTTGGCTTTTGGCTGAAAATCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGATTCCGAATTTTTAATCATA</pcr_primer_p1>
		<pcr_primer_p2>ACGAATATGTATTTCTTCGATCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGATTCCGAATTTTTAATCATATTCCAACGACTTCTGAAAACTTACTAGACCGAATTCACTTGAAAAGGGAATATTCTAACACGTGATTTAAAAAAAACTATCGAAATAAAATTTGTCAATCTTATTTTTGTAAAATCCTATCAGTGGAAGGATCATACGTATTCAGATTTAAACAAATACTAAAATTTCATAGGTCTCCGAAATTATAAAACTACACAAAAATAGTGATCGAAGAAATACATATTCGT</canonical_amplicon>
		<polymorphic_amplicon>CAGATTCCGAATTTTTAATCATATTCCAACGACTTCTGAAAACTTACTAGACCGAATTCACTTGAAAAGGGAATATTCTAACACGTGATTTAAAAAAAACTATCGAAATAAAATTTGTCAATCTTATTTTTGTAAAATCCTWTCAGTGGAAGGATCATACGTATTCAGATTTAAACAAATACTAAAATTTCATAGGTCTCCGAAATTATAAAACTACACAAAAATAGTGATCGAAGAAATACATATTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16752</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>80536</contig_pos>
        <strand>+</strand>
        <context>GATTTATGGT[C/T]ATGttcgagg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGT</left_flank>
        <right_flank>ATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTTGAGAATGTGATGTGATGGCTCTTCAGATTTTTCTTTTCAATTCTGAAGCGATTTCATATTTGAGAACTTAGGGTCCCAGTCCGTTGACAGTATTACAATTTCCACCTTAACCAAGATGCCAAACCGAATTCTCATCACCTGATATATAAATCCATCAAAATCGATGATGAGCTACGCGGTCGCAATTCTCCGTTTTTGGCGCACAGTGGGTGGTGACGGCGAAAAAGAGGGAGAAAGATGATGATGATTAAATGAGAAGAAAAATGTGAAAATACACACGCCATATAAGACAATGTCCTTTTCCTTTGAACATCTGCCTCTAAACCCATCATCGCCTTTTTGAAATTCCACTTTTTTTAGGTGACACCCTCTTAAGAATCCGCTTAGTACGCCCTTCTCCAGAGGGAGGTCCGAAAGGGGTGGCTGAATCAATTAAACCTTATTTATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAAAATTCAGGACTACAAAACTTCTGACATTCCGAATTTCTGTTTTCTGAGTTTTTGAATATCTAAATTTCCCAACTTCAAAGGTTCTGAATATCTGAATTTCCTGAGATTTCCAAAACTTTGAATTATCTGAAATTAATAAAATCTGAATTATTCAATTTCTAAAGTTGTGAAATTATTGATTCTATTTTTTCAAAAGATTTTCCAATTTTCTAAAATTTCCTATTTCTCGGGTTTCCTTTTGGATTTGAGTTTTTTTTTTGAATTTTGAGTTTCTGGAATTTTGTTCAAAATTTTGAATTTTTGACTTTTT</canonical>
            <polymorphic>AACTTGAGAATGTGATGTGATGGCTCTTCAGATTTTTCTTTTCAATTCTGAAGCGATTTCATATTTGAGAACTTAGGGTCCCAGTCCGTTGACAGTATTACAATTTCCACCTTAACCAAGATGCCAAACCGAATTCTCATCACCTGATATATAAATCCATCAAAATCGATGATGAGCTACGCGGTCGCAATTCTCCGTTTTTGGCGCACAGTGGGTGGTGACGGCGAAAAAGAGGGAGAAAGATGATGATGATTAAATGAGAAGAAAAATGTGAAAATACACACGCCATATAAGACAATGTCCTTTTCCTTTGAACATCTGCCTCTAAACCCATCATCGCCTTTTTGAAATTCCACTTTTTTTAGGTGACACCCTCTTAAGAATCCGCTTAGTACGCCCTTCTCCAGAGGGAGGTCCGAAAGGGGTGGCTGAATCAATTAAACCTTATTTATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTYATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAAAATTCAGGACTACAAAACTTCTGACATTCCGAATTTCTGTTTTCTGAGTTTTTGAATATCTAAATTTCCCAACTTCAAAGGTTCTGAATATCTGAATTTCCTGAGATTTCCAAAACTTTGAATTATCTGAAATTAATAAAATCTGAATTATTCAATTTCTAAAGTTGTGAAATTATTGATTCTATTTTTTCAAAAGATTTTCCAATTTTCTAAAATTTCCTATTTCTCGGGTTTCCTTTTGGATTTGAGTTTTTTTTTTGAATTTTGAGTTTCTGGAATTTTGTTCAAAATTTTGAATTTTTGACTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTAAGAATCCGCTTAGTACG</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAATCATTTGCAACTTT</pcr_primer_p2>
		<pcr_amplicon_size>316</pcr_amplicon_size>
		<canonical_amplicon>TCTTAAGAATCCGCTTAGTACGCCCTTCTCCAGAGGGAGGTCCGAAAGGGGTGGCTGAATCAATTAAACCTTATTTATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTAAGAATCCGCTTAGTACGCCCTTCTCCAGAGGGAGGTCCGAAAGGGGTGGCTGAATCAATTAAACCTTATTTATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTYATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16753</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>80516</contig_pos>
        <strand>+</strand>
        <context>TTGTTTTGCG[A/G]CAAGATGCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAATCAATTAAACCTTATTTATTGGAAATTTTTCTCTTTTTGTTTTGCG</left_flank>
        <right_flank>CAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTGAGATAACTGAGCTCAAACTTGAGAATGTGATGTGATGGCTCTTCAGATTTTTCTTTTCAATTCTGAAGCGATTTCATATTTGAGAACTTAGGGTCCCAGTCCGTTGACAGTATTACAATTTCCACCTTAACCAAGATGCCAAACCGAATTCTCATCACCTGATATATAAATCCATCAAAATCGATGATGAGCTACGCGGTCGCAATTCTCCGTTTTTGGCGCACAGTGGGTGGTGACGGCGAAAAAGAGGGAGAAAGATGATGATGATTAAATGAGAAGAAAAATGTGAAAATACACACGCCATATAAGACAATGTCCTTTTCCTTTGAACATCTGCCTCTAAACCCATCATCGCCTTTTTGAAATTCCACTTTTTTTAGGTGACACCCTCTTAAGAATCCGCTTAGTACGCCCTTCTCCAGAGGGAGGTCCGAAAGGGGTGGCTGAATCAATTAAACCTTATTTATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAAAATTCAGGACTACAAAACTTCTGACATTCCGAATTTCTGTTTTCTGAGTTTTTGAATATCTAAATTTCCCAACTTCAAAGGTTCTGAATATCTGAATTTCCTGAGATTTCCAAAACTTTGAATTATCTGAAATTAATAAAATCTGAATTATTCAATTTCTAAAGTTGTGAAATTATTGATTCTATTTTTTCAAAAGATTTTCCAATTTTCTAAAATTTCCTATTTCTCGGGTTTCCTTTTGGATTTGAGTTTTTTTTTTGAATTTTGAGTTTCTGGAATTTTGTTCAAAA</canonical>
            <polymorphic>TATTGAGATAACTGAGCTCAAACTTGAGAATGTGATGTGATGGCTCTTCAGATTTTTCTTTTCAATTCTGAAGCGATTTCATATTTGAGAACTTAGGGTCCCAGTCCGTTGACAGTATTACAATTTCCACCTTAACCAAGATGCCAAACCGAATTCTCATCACCTGATATATAAATCCATCAAAATCGATGATGAGCTACGCGGTCGCAATTCTCCGTTTTTGGCGCACAGTGGGTGGTGACGGCGAAAAAGAGGGAGAAAGATGATGATGATTAAATGAGAAGAAAAATGTGAAAATACACACGCCATATAAGACAATGTCCTTTTCCTTTGAACATCTGCCTCTAAACCCATCATCGCCTTTTTGAAATTCCACTTTTTTTAGGTGACACCCTCTTAAGAATCCGCTTAGTACGCCCTTCTCCAGAGGGAGGTCCGAAAGGGGTGGCTGAATCAATTAAACCTTATTTATTGGAAATTTTTCTCTTTTTGTTTTGCGRCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAAAATTCAGGACTACAAAACTTCTGACATTCCGAATTTCTGTTTTCTGAGTTTTTGAATATCTAAATTTCCCAACTTCAAAGGTTCTGAATATCTGAATTTCCTGAGATTTCCAAAACTTTGAATTATCTGAAATTAATAAAATCTGAATTATTCAATTTCTAAAGTTGTGAAATTATTGATTCTATTTTTTCAAAAGATTTTCCAATTTTCTAAAATTTCCTATTTCTCGGGTTTCCTTTTGGATTTGAGTTTTTTTTTTGAATTTTGAGTTTCTGGAATTTTGTTCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTAAGAATCCGCTTAGTACG</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAATCATTTGCAACTTT</pcr_primer_p2>
		<pcr_amplicon_size>316</pcr_amplicon_size>
		<canonical_amplicon>TCTTAAGAATCCGCTTAGTACGCCCTTCTCCAGAGGGAGGTCCGAAAGGGGTGGCTGAATCAATTAAACCTTATTTATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTAAGAATCCGCTTAGTACGCCCTTCTCCAGAGGGAGGTCCGAAAGGGGTGGCTGAATCAATTAAACCTTATTTATTGGAAATTTTTCTCTTTTTGTTTTGCGRCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16754</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>80479</contig_pos>
        <strand>+</strand>
        <context>ATCAATTAAA[C/T]CTTATTTATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACGCCCTTCTCCAGAGGGAGGTCCGAAAGGGGTGGCTGAATCAATTAAA</left_flank>
        <right_flank>CTTATTTATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATTTAGCTAACACGTTTTTGATATCTTACATAGGTATTGAGATAACTGAGCTCAAACTTGAGAATGTGATGTGATGGCTCTTCAGATTTTTCTTTTCAATTCTGAAGCGATTTCATATTTGAGAACTTAGGGTCCCAGTCCGTTGACAGTATTACAATTTCCACCTTAACCAAGATGCCAAACCGAATTCTCATCACCTGATATATAAATCCATCAAAATCGATGATGAGCTACGCGGTCGCAATTCTCCGTTTTTGGCGCACAGTGGGTGGTGACGGCGAAAAAGAGGGAGAAAGATGATGATGATTAAATGAGAAGAAAAATGTGAAAATACACACGCCATATAAGACAATGTCCTTTTCCTTTGAACATCTGCCTCTAAACCCATCATCGCCTTTTTGAAATTCCACTTTTTTTAGGTGACACCCTCTTAAGAATCCGCTTAGTACGCCCTTCTCCAGAGGGAGGTCCGAAAGGGGTGGCTGAATCAATTAAACCTTATTTATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAAAATTCAGGACTACAAAACTTCTGACATTCCGAATTTCTGTTTTCTGAGTTTTTGAATATCTAAATTTCCCAACTTCAAAGGTTCTGAATATCTGAATTTCCTGAGATTTCCAAAACTTTGAATTATCTGAAATTAATAAAATCTGAATTATTCAATTTCTAAAGTTGTGAAATTATTGATTCTATTTTTTCAAAAGATTTTCCAATTTTCTAAAATTTCCTATTTCTCGGGTTTCCTTTTGGATTTGAGTTTT</canonical>
            <polymorphic>TTTATTTAGCTAACACGTTTTTGATATCTTACATAGGTATTGAGATAACTGAGCTCAAACTTGAGAATGTGATGTGATGGCTCTTCAGATTTTTCTTTTCAATTCTGAAGCGATTTCATATTTGAGAACTTAGGGTCCCAGTCCGTTGACAGTATTACAATTTCCACCTTAACCAAGATGCCAAACCGAATTCTCATCACCTGATATATAAATCCATCAAAATCGATGATGAGCTACGCGGTCGCAATTCTCCGTTTTTGGCGCACAGTGGGTGGTGACGGCGAAAAAGAGGGAGAAAGATGATGATGATTAAATGAGAAGAAAAATGTGAAAATACACACGCCATATAAGACAATGTCCTTTTCCTTTGAACATCTGCCTCTAAACCCATCATCGCCTTTTTGAAATTCCACTTTTTTTAGGTGACACCCTCTTAAGAATCCGCTTAGTACGCCCTTCTCCAGAGGGAGGTCCGAAAGGGGTGGCTGAATCAATTAAAYCTTATTTATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAAAATTCAGGACTACAAAACTTCTGACATTCCGAATTTCTGTTTTCTGAGTTTTTGAATATCTAAATTTCCCAACTTCAAAGGTTCTGAATATCTGAATTTCCTGAGATTTCCAAAACTTTGAATTATCTGAAATTAATAAAATCTGAATTATTCAATTTCTAAAGTTGTGAAATTATTGATTCTATTTTTTCAAAAGATTTTCCAATTTTCTAAAATTTCCTATTTCTCGGGTTTCCTTTTGGATTTGAGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTAAGAATCCGCTTAGTACG</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAATCATTTGCAACTTT</pcr_primer_p2>
		<pcr_amplicon_size>316</pcr_amplicon_size>
		<canonical_amplicon>TCTTAAGAATCCGCTTAGTACGCCCTTCTCCAGAGGGAGGTCCGAAAGGGGTGGCTGAATCAATTAAACCTTATTTATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTAAGAATCCGCTTAGTACGCCCTTCTCCAGAGGGAGGTCCGAAAGGGGTGGCTGAATCAATTAAAYCTTATTTATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16755</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>80408</contig_pos>
        <strand>+</strand>
        <context>TTAGGTGACA[C/T]CCTCTTAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTCTAAACCCATCATCGCCTTTTTGAAATTCCACTTTTTTTAGGTGACA</left_flank>
        <right_flank>CCTCTTAAGAATCCGCTTAGTACGCCCTTCTCCAGAGGGAGGTCCGAAAG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATCTCTATTGTTGTAAAATATATTAAAAGTTGTCAACTGATAAATTGTTTATCATAATATGACACACATTTTATTTAGCTAACACGTTTTTGATATCTTACATAGGTATTGAGATAACTGAGCTCAAACTTGAGAATGTGATGTGATGGCTCTTCAGATTTTTCTTTTCAATTCTGAAGCGATTTCATATTTGAGAACTTAGGGTCCCAGTCCGTTGACAGTATTACAATTTCCACCTTAACCAAGATGCCAAACCGAATTCTCATCACCTGATATATAAATCCATCAAAATCGATGATGAGCTACGCGGTCGCAATTCTCCGTTTTTGGCGCACAGTGGGTGGTGACGGCGAAAAAGAGGGAGAAAGATGATGATGATTAAATGAGAAGAAAAATGTGAAAATACACACGCCATATAAGACAATGTCCTTTTCCTTTGAACATCTGCCTCTAAACCCATCATCGCCTTTTTGAAATTCCACTTTTTTTAGGTGACACCCTCTTAAGAATCCGCTTAGTACGCCCTTCTCCAGAGGGAGGTCCGAAAGGGGTGGCTGAATCAATTAAACCTTATTTATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAAAATTCAGGACTACAAAACTTCTGACATTCCGAATTTCTGTTTTCTGAGTTTTTGAATATCTAAATTTCCCAACTTCAAAGGTTCTGAATATCTGAATTTCCTGAGATTTCCAAAACTTTGAATTATCTGAAATTAATAAAATCTGAATTATTCAATTTCTAAAGTTGTGAAATTATTGATTC</canonical>
            <polymorphic>TTATCTCTATTGTTGTAAAATATATTAAAAGTTGTCAACTGATAAATTGTTTATCATAATATGACACACATTTTATTTAGCTAACACGTTTTTGATATCTTACATAGGTATTGAGATAACTGAGCTCAAACTTGAGAATGTGATGTGATGGCTCTTCAGATTTTTCTTTTCAATTCTGAAGCGATTTCATATTTGAGAACTTAGGGTCCCAGTCCGTTGACAGTATTACAATTTCCACCTTAACCAAGATGCCAAACCGAATTCTCATCACCTGATATATAAATCCATCAAAATCGATGATGAGCTACGCGGTCGCAATTCTCCGTTTTTGGCGCACAGTGGGTGGTGACGGCGAAAAAGAGGGAGAAAGATGATGATGATTAAATGAGAAGAAAAATGTGAAAATACACACGCCATATAAGACAATGTCCTTTTCCTTTGAACATCTGCCTCTAAACCCATCATCGCCTTTTTGAAATTCCACTTTTTTTAGGTGACAYCCTCTTAAGAATCCGCTTAGTACGCCCTTCTCCAGAGGGAGGTCCGAAAGGGGTGGCTGAATCAATTAAACCTTATTTATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAAAATTCAGGACTACAAAACTTCTGACATTCCGAATTTCTGTTTTCTGAGTTTTTGAATATCTAAATTTCCCAACTTCAAAGGTTCTGAATATCTGAATTTCCTGAGATTTCCAAAACTTTGAATTATCTGAAATTAATAAAATCTGAATTATTCAATTTCTAAAGTTGTGAAATTATTGATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>308 114 90 72 66 66 56 56 53 33 18 13 13 10 8 5 5 4 3 3 2 2</canonical_bands>
                <polymorphic_bands>308 114 90 72 66 66 59 56 53 33 18 13 13 10 8 5 5 4 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAAGAGGGAGAAAGATGAT</pcr_primer_p1>
		<pcr_primer_p2>CAAAAAGAGAAAAATTTCCAATA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAAAAGAGGGAGAAAGATGATGATGATTAAATGAGAAGAAAAATGTGAAAATACACACGCCATATAAGACAATGTCCTTTTCCTTTGAACATCTGCCTCTAAACCCATCATCGCCTTTTTGAAATTCCACTTTTTTTAGGTGACACCCTCTTAAGAATCCGCTTAGTACGCCCTTCTCCAGAGGGAGGTCCGAAAGGGGTGGCTGAATCAATTAAACCTTATTTATTGGAAATTTTTCTCTTTTTG</canonical_amplicon>
		<polymorphic_amplicon>GAAAAAGAGGGAGAAAGATGATGATGATTAAATGAGAAGAAAAATGTGAAAATACACACGCCATATAAGACAATGTCCTTTTCCTTTGAACATCTGCCTCTAAACCCATCATCGCCTTTTTGAAATTCCACTTTTTTTAGGTGACAYCCTCTTAAGAATCCGCTTAGTACGCCCTTCTCCAGAGGGAGGTCCGAAAGGGGTGGCTGAATCAATTAAACCTTATTTATTGGAAATTTTTCTCTTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16756</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>80286</contig_pos>
        <strand>+</strand>
        <context>AAGATGATGA[A/T]GATTAAATGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGGCGCACAGTGGGTGGTGACGGCGAAAAAGAGGGAGAAAGATGATGA</left_flank>
        <right_flank>GATTAAATGAGAAGAAAAATGTGAAAATACACACGCCATATAAGACAATG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCAGATTTTATAGAATAAAAATTCATGTTTCTTCAGAAAATCAATTTTGGATTCTAGAGAACAAGTGCTCAGTAACCGTGAAACCTGAAATATCGCCCTAACTTTTAACTTTGAGCCAATTTATCTCTATTGTTGTAAAATATATTAAAAGTTGTCAACTGATAAATTGTTTATCATAATATGACACACATTTTATTTAGCTAACACGTTTTTGATATCTTACATAGGTATTGAGATAACTGAGCTCAAACTTGAGAATGTGATGTGATGGCTCTTCAGATTTTTCTTTTCAATTCTGAAGCGATTTCATATTTGAGAACTTAGGGTCCCAGTCCGTTGACAGTATTACAATTTCCACCTTAACCAAGATGCCAAACCGAATTCTCATCACCTGATATATAAATCCATCAAAATCGATGATGAGCTACGCGGTCGCAATTCTCCGTTTTTGGCGCACAGTGGGTGGTGACGGCGAAAAAGAGGGAGAAAGATGATGATGATTAAATGAGAAGAAAAATGTGAAAATACACACGCCATATAAGACAATGTCCTTTTCCTTTGAACATCTGCCTCTAAACCCATCATCGCCTTTTTGAAATTCCACTTTTTTTAGGTGACACCCTCTTAAGAATCCGCTTAGTACGCCCTTCTCCAGAGGGAGGTCCGAAAGGGGTGGCTGAATCAATTAAACCTTATTTATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAAAATTCAGGACTACAAAACTTCTGACATTCCGAATTTCTGTTTTCTGAGTTTTTGAATATC</canonical>
            <polymorphic>CTTCAGATTTTATAGAATAAAAATTCATGTTTCTTCAGAAAATCAATTTTGGATTCTAGAGAACAAGTGCTCAGTAACCGTGAAACCTGAAATATCGCCCTAACTTTTAACTTTGAGCCAATTTATCTCTATTGTTGTAAAATATATTAAAAGTTGTCAACTGATAAATTGTTTATCATAATATGACACACATTTTATTTAGCTAACACGTTTTTGATATCTTACATAGGTATTGAGATAACTGAGCTCAAACTTGAGAATGTGATGTGATGGCTCTTCAGATTTTTCTTTTCAATTCTGAAGCGATTTCATATTTGAGAACTTAGGGTCCCAGTCCGTTGACAGTATTACAATTTCCACCTTAACCAAGATGCCAAACCGAATTCTCATCACCTGATATATAAATCCATCAAAATCGATGATGAGCTACGCGGTCGCAATTCTCCGTTTTTGGCGCACAGTGGGTGGTGACGGCGAAAAAGAGGGAGAAAGATGATGAWGATTAAATGAGAAGAAAAATGTGAAAATACACACGCCATATAAGACAATGTCCTTTTCCTTTGAACATCTGCCTCTAAACCCATCATCGCCTTTTTGAAATTCCACTTTTTTTAGGTGACACCCTCTTAAGAATCCGCTTAGTACGCCCTTCTCCAGAGGGAGGTCCGAAAGGGGTGGCTGAATCAATTAAACCTTATTTATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAAAATTCAGGACTACAAAACTTCTGACATTCCGAATTTCTGTTTTCTGAGTTTTTGAATATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCCGTTGACAGTATTACAATTT</pcr_primer_p1>
		<pcr_primer_p2>GTTTAGAGGCAGATGTTCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTCCGTTGACAGTATTACAATTTCCACCTTAACCAAGATGCCAAACCGAATTCTCATCACCTGATATATAAATCCATCAAAATCGATGATGAGCTACGCGGTCGCAATTCTCCGTTTTTGGCGCACAGTGGGTGGTGACGGCGAAAAAGAGGGAGAAAGATGATGATGATTAAATGAGAAGAAAAATGTGAAAATACACACGCCATATAAGACAATGTCCTTTTCCTTTGAACATCTGCCTCTAAAC</canonical_amplicon>
		<polymorphic_amplicon>GTCCGTTGACAGTATTACAATTTCCACCTTAACCAAGATGCCAAACCGAATTCTCATCACCTGATATATAAATCCATCAAAATCGATGATGAGCTACGCGGTCGCAATTCTCCGTTTTTGGCGCACAGTGGGTGGTGACGGCGAAAAAGAGGGAGAAAGATGATGAWGATTAAATGAGAAGAAAAATGTGAAAATACACACGCCATATAAGACAATGTCCTTTTCCTTTGAACATCTGCCTCTAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16758</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>112982</contig_pos>
        <strand>+</strand>
        <context>ACTACTGGGA[A/G]GTTACTGTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGTACCATCAAAAATTCCCGTATTTTTTGCAGGGTGTCCACTACTGGGA</left_flank>
        <right_flank>GTTACTGTAGACCGTCATGACGGTCATGCAGACATCGTCATCGGCGTTGC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTCTGGTCCCGACACGATTTGTACCATCGACGGACTTCATTTCAATACCGTCTACACAGCTCGCGTCAAATCATTCAATTCGGCTGGCGAAAGTGAATACAGCGAATCGATTTGTCTTCAAACCGCCCAAGTTGCATGGTTCCAACTCACCAAATCTCCATCTCAACGGGATATGATACTCTCAAATGAATGTGCAACACTGTGTGGTAACACTTTGGAACATCGCACTGTTCTAGGATCAATCGCTTTTTCAAAGGTACAGTATTCTTTCTCGATCTTGGATATTTTGAATTTTTATCAATTTTCGAGGTGTGACAGTTTGATTTTAGTCTTCTGAAAATTCCGAAATTTTGAAAATTTCTGGTTACTGTAAATCCGGAACTTTTCAAGTTTTCCAAGAAGATACAACCGCGAGCCCACCAGCTCAACTCCTCTAGGGGCGCATGTATGTACCATCAAAAATTCCCGTATTTTTTGCAGGGTGTCCACTACTGGGAAGTTACTGTAGACCGTCATGACGGTCATGCAGACATCGTCATCGGCGTTGCTCAGCCGGCGGTCAATCGAAATCTGATGCTCGGAAAAGATCTTCACGGATGGTCCATGTATGTGGATGGAGAGAGATCTTGGTATCTGCACAACGAAACGCATCACAATCGAATTCTTGGCGGCGTCGGAAGAGGTAACTATCAGGAACCTAGATACATTGGTTCAAAGTTGAACATTTCAAATACCTCTCACGAGGAACCTAAGTTTTCTAGTCAAGAAATCATTGATTTCAAAAACCATTAAAATTCTGAAATGTTTGATGTGCAGGTACCGTAATTGGTGTGAAATTGGACTGCGATCGAGGTGTGATGGAGTTCACGATCAATGATAGGAAACGAATGTATCAAGGAAATCCAGTGGCGTTTACGTAAGTTCTCTGTTTTTATCCGAAAAATATTGAACCTCGAAAGTTCAGAATTTCAGCATCTTGATATTTCAGGTTATGAGAA</canonical>
            <polymorphic>TACTCTGGTCCCGACACGATTTGTACCATCGACGGACTTCATTTCAATACCGTCTACACAGCTCGCGTCAAATCATTCAATTCGGCTGGCGAAAGTGAATACAGCGAATCGATTTGTCTTCAAACCGCCCAAGTTGCATGGTTCCAACTCACCAAATCTCCATCTCAACGGGATATGATACTCTCAAATGAATGTGCAACACTGTGTGGTAACACTTTGGAACATCGCACTGTTCTAGGATCAATCGCTTTTTCAAAGGTACAGTATTCTTTCTCGATCTTGGATATTTTGAATTTTTATCAATTTTCGAGGTGTGACAGTTTGATTTTAGTCTTCTGAAAATTCCGAAATTTTGAAAATTTCTGGTTACTGTAAATCCGGAACTTTTCAAGTTTTCCAAGAAGATACAACCGCGAGCCCACCAGCTCAACTCCTCTAGGGGCGCATGTATGTACCATCAAAAATTCCCGTATTTTTTGCAGGGTGTCCACTACTGGGARGTTACTGTAGACCGTCATGACGGTCATGCAGACATCGTCATCGGCGTTGCTCAGCCGGCGGTCAATCGAAATCTGATGCTCGGAAAAGATCTTCACGGATGGTCCATGTATGTGGATGGAGAGAGATCTTGGTATCTGCACAACGAAACGCATCACAATCGAATTCTTGGCGGCGTCGGAAGAGGTAACTATCAGGAACCTAGATACATTGGTTCAAAGTTGAACATTTCAAATACCTCTCACGAGGAACCTAAGTTTTCTAGTCAAGAAATCATTGATTTCAAAAACCATTAAAATTCTGAAATGTTTGATGTGCAGGTACCGTAATTGGTGTGAAATTGGACTGCGATCGAGGTGTGATGGAGTTCACGATCAATGATAGGAAACGAATGTATCAAGGAAATCCAGTGGCGTTTACGTAAGTTCTCTGTTTTTATCCGAAAAATATTGAACCTCGAAAGTTCAGAATTTCAGCATCTTGATATTTCAGGTTATGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAAGTTTTCCAAGAAGATA</pcr_primer_p1>
		<pcr_primer_p2>AAGATCTCTCTCCATCCACATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAAGTTTTCCAAGAAGATACAACCGCGAGCCCACCAGCTCAACTCCTCTAGGGGCGCATGTATGTACCATCAAAAATTCCCGTATTTTTTGCAGGGTGTCCACTACTGGGAAGTTACTGTAGACCGTCATGACGGTCATGCAGACATCGTCATCGGCGTTGCTCAGCCGGCGGTCAATCGAAATCTGATGCTCGGAAAAGATCTTCACGGATGGTCCATGTATGTGGATGGAGAGAGATCTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAAGTTTTCCAAGAAGATACAACCGCGAGCCCACCAGCTCAACTCCTCTAGGGGCGCATGTATGTACCATCAAAAATTCCCGTATTTTTTGCAGGGTGTCCACTACTGGGARGTTACTGTAGACCGTCATGACGGTCATGCAGACATCGTCATCGGCGTTGCTCAGCCGGCGGTCAATCGAAATCTGATGCTCGGAAAAGATCTTCACGGATGGTCCATGTATGTGGATGGAGAGAGATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16759</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>112951</contig_pos>
        <strand>+</strand>
        <context>CAAAAATTCC[C/T]GTATTTTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCACCAGCTCAACTCCTCTAGGGGCGCATGTATGTACCATCAAAAATTCC</left_flank>
        <right_flank>GTATTTTTTGCAGGGTGTCCACTACTGGGAAGTTACTGTAGACCGTCATG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCAAAATAATCCAAATTTTCAGGAAGTCTACTCTGGTCCCGACACGATTTGTACCATCGACGGACTTCATTTCAATACCGTCTACACAGCTCGCGTCAAATCATTCAATTCGGCTGGCGAAAGTGAATACAGCGAATCGATTTGTCTTCAAACCGCCCAAGTTGCATGGTTCCAACTCACCAAATCTCCATCTCAACGGGATATGATACTCTCAAATGAATGTGCAACACTGTGTGGTAACACTTTGGAACATCGCACTGTTCTAGGATCAATCGCTTTTTCAAAGGTACAGTATTCTTTCTCGATCTTGGATATTTTGAATTTTTATCAATTTTCGAGGTGTGACAGTTTGATTTTAGTCTTCTGAAAATTCCGAAATTTTGAAAATTTCTGGTTACTGTAAATCCGGAACTTTTCAAGTTTTCCAAGAAGATACAACCGCGAGCCCACCAGCTCAACTCCTCTAGGGGCGCATGTATGTACCATCAAAAATTCCCGTATTTTTTGCAGGGTGTCCACTACTGGGAAGTTACTGTAGACCGTCATGACGGTCATGCAGACATCGTCATCGGCGTTGCTCAGCCGGCGGTCAATCGAAATCTGATGCTCGGAAAAGATCTTCACGGATGGTCCATGTATGTGGATGGAGAGAGATCTTGGTATCTGCACAACGAAACGCATCACAATCGAATTCTTGGCGGCGTCGGAAGAGGTAACTATCAGGAACCTAGATACATTGGTTCAAAGTTGAACATTTCAAATACCTCTCACGAGGAACCTAAGTTTTCTAGTCAAGAAATCATTGATTTCAAAAACCATTAAAATTCTGAAATGTTTGATGTGCAGGTACCGTAATTGGTGTGAAATTGGACTGCGATCGAGGTGTGATGGAGTTCACGATCAATGATAGGAAACGAATGTATCAAGGAAATCCAGTGGCGTTTACGTAAGTTCTCTGTTTTTATCCGAAAAATATTGAACCTCGAAAGTTCAGAAT</canonical>
            <polymorphic>ATTTCAAAATAATCCAAATTTTCAGGAAGTCTACTCTGGTCCCGACACGATTTGTACCATCGACGGACTTCATTTCAATACCGTCTACACAGCTCGCGTCAAATCATTCAATTCGGCTGGCGAAAGTGAATACAGCGAATCGATTTGTCTTCAAACCGCCCAAGTTGCATGGTTCCAACTCACCAAATCTCCATCTCAACGGGATATGATACTCTCAAATGAATGTGCAACACTGTGTGGTAACACTTTGGAACATCGCACTGTTCTAGGATCAATCGCTTTTTCAAAGGTACAGTATTCTTTCTCGATCTTGGATATTTTGAATTTTTATCAATTTTCGAGGTGTGACAGTTTGATTTTAGTCTTCTGAAAATTCCGAAATTTTGAAAATTTCTGGTTACTGTAAATCCGGAACTTTTCAAGTTTTCCAAGAAGATACAACCGCGAGCCCACCAGCTCAACTCCTCTAGGGGCGCATGTATGTACCATCAAAAATTCCYGTATTTTTTGCAGGGTGTCCACTACTGGGAAGTTACTGTAGACCGTCATGACGGTCATGCAGACATCGTCATCGGCGTTGCTCAGCCGGCGGTCAATCGAAATCTGATGCTCGGAAAAGATCTTCACGGATGGTCCATGTATGTGGATGGAGAGAGATCTTGGTATCTGCACAACGAAACGCATCACAATCGAATTCTTGGCGGCGTCGGAAGAGGTAACTATCAGGAACCTAGATACATTGGTTCAAAGTTGAACATTTCAAATACCTCTCACGAGGAACCTAAGTTTTCTAGTCAAGAAATCATTGATTTCAAAAACCATTAAAATTCTGAAATGTTTGATGTGCAGGTACCGTAATTGGTGTGAAATTGGACTGCGATCGAGGTGTGATGGAGTTCACGATCAATGATAGGAAACGAATGTATCAAGGAAATCCAGTGGCGTTTACGTAAGTTCTCTGTTTTTATCCGAAAAATATTGAACCTCGAAAGTTCAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAAGTTTTCCAAGAAGATA</pcr_primer_p1>
		<pcr_primer_p2>AAGATCTCTCTCCATCCACATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAAGTTTTCCAAGAAGATACAACCGCGAGCCCACCAGCTCAACTCCTCTAGGGGCGCATGTATGTACCATCAAAAATTCCCGTATTTTTTGCAGGGTGTCCACTACTGGGAAGTTACTGTAGACCGTCATGACGGTCATGCAGACATCGTCATCGGCGTTGCTCAGCCGGCGGTCAATCGAAATCTGATGCTCGGAAAAGATCTTCACGGATGGTCCATGTATGTGGATGGAGAGAGATCTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAAGTTTTCCAAGAAGATACAACCGCGAGCCCACCAGCTCAACTCCTCTAGGGGCGCATGTATGTACCATCAAAAATTCCYGTATTTTTTGCAGGGTGTCCACTACTGGGAAGTTACTGTAGACCGTCATGACGGTCATGCAGACATCGTCATCGGCGTTGCTCAGCCGGCGGTCAATCGAAATCTGATGCTCGGAAAAGATCTTCACGGATGGTCCATGTATGTGGATGGAGAGAGATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16760</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>112796</contig_pos>
        <strand>+</strand>
        <context>TTTTCGAGGT[G/T]TGACAGTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTATTCTTTCTCGATCTTGGATATTTTGAATTTTTATCAATTTTCGAGGT</left_flank>
        <right_flank>TGACAGTTTGATTTTAGTCTTCTGAAAATTCCGAAATTTTGAAAATTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTCAAGTTTCCTCCAAAATATATATTCAGAAAAATGTTTTTTTTTTCAATTCCGAATTTCTGCAATTTTCGATTCCTGAATTACATTTTTTAAATTGGAAATTTCAAATCACATATTTCAAAATAATCCAAATTTTCAGGAAGTCTACTCTGGTCCCGACACGATTTGTACCATCGACGGACTTCATTTCAATACCGTCTACACAGCTCGCGTCAAATCATTCAATTCGGCTGGCGAAAGTGAATACAGCGAATCGATTTGTCTTCAAACCGCCCAAGTTGCATGGTTCCAACTCACCAAATCTCCATCTCAACGGGATATGATACTCTCAAATGAATGTGCAACACTGTGTGGTAACACTTTGGAACATCGCACTGTTCTAGGATCAATCGCTTTTTCAAAGGTACAGTATTCTTTCTCGATCTTGGATATTTTGAATTTTTATCAATTTTCGAGGTGTGACAGTTTGATTTTAGTCTTCTGAAAATTCCGAAATTTTGAAAATTTCTGGTTACTGTAAATCCGGAACTTTTCAAGTTTTCCAAGAAGATACAACCGCGAGCCCACCAGCTCAACTCCTCTAGGGGCGCATGTATGTACCATCAAAAATTCCCGTATTTTTTGCAGGGTGTCCACTACTGGGAAGTTACTGTAGACCGTCATGACGGTCATGCAGACATCGTCATCGGCGTTGCTCAGCCGGCGGTCAATCGAAATCTGATGCTCGGAAAAGATCTTCACGGATGGTCCATGTATGTGGATGGAGAGAGATCTTGGTATCTGCACAACGAAACGCATCACAATCGAATTCTTGGCGGCGTCGGAAGAGGTAACTATCAGGAACCTAGATACATTGGTTCAAAGTTGAACATTTCAAATACCTCTCACGAGGAACCTAAGTTTTCTAGTCAAGAAATCATTGATTTCAAAAACCATTAAAATTCTGAAATGTTTGATGT</canonical>
            <polymorphic>TCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTCAAGTTTCCTCCAAAATATATATTCAGAAAAATGTTTTTTTTTTCAATTCCGAATTTCTGCAATTTTCGATTCCTGAATTACATTTTTTAAATTGGAAATTTCAAATCACATATTTCAAAATAATCCAAATTTTCAGGAAGTCTACTCTGGTCCCGACACGATTTGTACCATCGACGGACTTCATTTCAATACCGTCTACACAGCTCGCGTCAAATCATTCAATTCGGCTGGCGAAAGTGAATACAGCGAATCGATTTGTCTTCAAACCGCCCAAGTTGCATGGTTCCAACTCACCAAATCTCCATCTCAACGGGATATGATACTCTCAAATGAATGTGCAACACTGTGTGGTAACACTTTGGAACATCGCACTGTTCTAGGATCAATCGCTTTTTCAAAGGTACAGTATTCTTTCTCGATCTTGGATATTTTGAATTTTTATCAATTTTCGAGGTKTGACAGTTTGATTTTAGTCTTCTGAAAATTCCGAAATTTTGAAAATTTCTGGTTACTGTAAATCCGGAACTTTTCAAGTTTTCCAAGAAGATACAACCGCGAGCCCACCAGCTCAACTCCTCTAGGGGCGCATGTATGTACCATCAAAAATTCCCGTATTTTTTGCAGGGTGTCCACTACTGGGAAGTTACTGTAGACCGTCATGACGGTCATGCAGACATCGTCATCGGCGTTGCTCAGCCGGCGGTCAATCGAAATCTGATGCTCGGAAAAGATCTTCACGGATGGTCCATGTATGTGGATGGAGAGAGATCTTGGTATCTGCACAACGAAACGCATCACAATCGAATTCTTGGCGGCGTCGGAAGAGGTAACTATCAGGAACCTAGATACATTGGTTCAAAGTTGAACATTTCAAATACCTCTCACGAGGAACCTAAGTTTTCTAGTCAAGAAATCATTGATTTCAAAAACCATTAAAATTCTGAAATGTTTGATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>152 105 105 87 85 72 65 54 50 45 42 39 26 19 15 15 6 5 5 4 2 2</canonical_bands>
                <polymorphic_bands>192 152 105 87 72 65 54 50 45 42 39 26 19 15 15 6 5 5 4 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>394 184 135 130 105 52</canonical_bands>
                <polymorphic_bands>394 184 157 135 130</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTCAACGGGATATGATACTCT</pcr_primer_p1>
		<pcr_primer_p2>GTTGTATCTTCTTGGAAAACTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTCAACGGGATATGATACTCTCAAATGAATGTGCAACACTGTGTGGTAACACTTTGGAACATCGCACTGTTCTAGGATCAATCGCTTTTTCAAAGGTACAGTATTCTTTCTCGATCTTGGATATTTTGAATTTTTATCAATTTTCGAGGTGTGACAGTTTGATTTTAGTCTTCTGAAAATTCCGAAATTTTGAAAATTTCTGGTTACTGTAAATCCGGAACTTTTCAAGTTTTCCAAGAAGATACAAC</canonical_amplicon>
		<polymorphic_amplicon>ATCTCAACGGGATATGATACTCTCAAATGAATGTGCAACACTGTGTGGTAACACTTTGGAACATCGCACTGTTCTAGGATCAATCGCTTTTTCAAAGGTACAGTATTCTTTCTCGATCTTGGATATTTTGAATTTTTATCAATTTTCGAGGTKTGACAGTTTGATTTTAGTCTTCTGAAAATTCCGAAATTTTGAAAATTTCTGGTTACTGTAAATCCGGAACTTTTCAAGTTTTCCAAGAAGATACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16761</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>145596</contig_pos>
        <strand></strand>
        <context>TTTTTCCTAA[T/C]TTCAACCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTTCTTCTGATTTATTAGATTTTTTTTTTGATTTTCTAGATTTTTCCTAA</left_flank>
        <right_flank>TTCAACCAAACTTCCCGACTTTTCCCAACCAAAGATTTGAAAAGTTGACA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGGGGGGGGCTCCTATTAGAGGGAACACGATGTTACAAACTTCAAAATTAAACGTTTTCGATGGTTTCTATATTTGAAACAACAAAAATTATTTATTATTATTACGGATTGTTATTCAATGAGATTTGAATCTCAAATTATCTGATTTTTTACGAAAGTCTCTTTTCTGTGGATTTTTGTGTATAAATCTGGGAAATGTTTTTTTTTCAAAATTGTATCAAATTCCAATAGTTTCTATGAAAACTCTCTATTTTCAGGTTTTTTTTGAAAAAAAATCTTTTTCGGCATCCAAAAGTTTAAAAAATTCAAAACCTTTGATCTCTAGTTTTCGGATGTTCGAGGCTTGCAAAACCAACAAAAAAAACAATTCCGTCTGTCTGTATGTATCTGTTTGTCCAAAAAAAGAAATGAGTTTCCATTTCGATTTTCAAAAATTTCAATATTTCAGCTTCTTCTGATTTATTAGATTTTTTTTTTGATTTTCTAGATTTTTCCTAATTTCAACCAAACTTCCCGACTTTTCCCAACCAAAGATTTGAAAAGTTGACAATACTCGATTTCAAAAAATCAATCGACTTTTTGATTTTCTACCCTTCTCGTCTCAAATTTTCAAAATCCCAAAGGTTCCCAAATTTCCAGTCCTTCTCAAGCTTGTCCCAAATATCCCCAAAAAAGGAGATGAAGTCACCGGGAGCGGTGATATCACTCTATATTCGACGATTTTTCCGATGGACCGGCGTACAAGTGTATCAGTGAGTCATTTCTTCGTCTTTTTAATGCAAATTTTCACCTCGTTTTCACTTTTTTGTTGTTCCCGAAATGTCATTTTCAAGGTACATACACTAAAGTGCAAATAGGGTGTGAAAAGTTAAAAAAAATGGTTTAAAACATTTTCAAAACTCCGTGCACCTTTAAGGTTTCCAGATTTCTCGAAGTAGTGTTTTAAAGCCTGATTTTCTTATTTTTATGAATGAAAATAGCAAAAAATAAACTGATTGA</canonical>
            <polymorphic>GGGGGGGGGGCTCCTATTAGAGGGAACACGATGTTACAAACTTCAAAATTAAACGTTTTCGATGGTTTCTATATTTGAAACAACAAAAATTATTTATTATTATTACGGATTGTTATTCAATGAGATTTGAATCTCAAATTATCTGATTTTTTACGAAAGTCTCTTTTCTGTGGATTTTTGTGTATAAATCTGGGAAATGTTTTTTTTTCAAAATTGTATCAAATTCCAATAGTTTCTATGAAAACTCTCTATTTTCAGGTTTTTTTTGAAAAAAAATCTTTTTCGGCATCCAAAAGTTTAAAAAATTCAAAACCTTTGATCTCTAGTTTTCGGATGTTCGAGGCTTGCAAAACCAACAAAAAAAACAATTCCGTCTGTCTGTATGTATCTGTTTGTCCAAAAAAAGAAATGAGTTTCCATTTCGATTTTCAAAAATTTCAATATTTCAGCTTCTTCTGATTTATTAGATTTTTTTTTTGATTTTCTAGATTTTTCCTAAYTTCAACCAAACTTCCCGACTTTTCCCAACCAAAGATTTGAAAAGTTGACAATACTCGATTTCAAAAAATCAATCGACTTTTTGATTTTCTACCCTTCTCGTCTCAAATTTTCAAAATCCCAAAGGTTCCCAAATTTCCAGTCCTTCTCAAGCTTGTCCCAAATATCCCCAAAAAAGGAGATGAAGTCACCGGGAGCGGTGATATCACTCTATATTCGACGATTTTTCCGATGGACCGGCGTACAAGTGTATCAGTGAGTCATTTCTTCGTCTTTTTAATGCAAATTTTCACCTCGTTTTCACTTTTTTGTTGTTCCCGAAATGTCATTTTCAAGGTACATACACTAAAGTGCAAATAGGGTGTGAAAAGTTAAAAAAAATGGTTTAAAACATTTTCAAAACTCCGTGCACCTTTAAGGTTTCCAGATTTCTCGAAGTAGTGTTTTAAAGCCTGATTTTCTTATTTTTATGAATGAAAATAGCAAAAAATAAACTGATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>218 151 108 82 75 67 64 63 49 46 41 26 10</canonical_bands>
                <polymorphic_bands>218 172 151 82 75 67 63 49 46 41 26 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGATCTCTAGTTTTCGGATGT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAATCGAGTATTGTCAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGATCTCTAGTTTTCGGATGTTCGAGGCTTGCAAAACCAACAAAAAAAACAATTCCGTCTGTCTGTATGTATCTGTTTGTCCAAAAAAAGAAATGAGTTTCCATTTCGATTTTCAAAAATTTCAATATTTCAGCTTCTTCTGATTTATTAGATTTTTTTTTTGATTTTCTAGATTTTTCCTAATTTCAACCAAACTTCCCGACTTTTCCCAACCAAAGATTTGAAAAGTTGACAATACTCGATTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>TTGATCTCTAGTTTTCGGATGTTCGAGGCTTGCAAAACCAACAAAAAAAACAATTCCGTCTGTCTGTATGTATCTGTTTGTCCAAAAAAAGAAATGAGTTTCCATTTCGATTTTCAAAAATTTCAATATTTCAGCTTCTTCTGATTTATTAGATTTTTTTTTTGATTTTCTAGATTTTTCCTAAYTTCAACCAAACTTCCCGACTTTTCCCAACCAAAGATTTGAAAAGTTGACAATACTCGATTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16762</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>255435</contig_pos>
        <strand>+</strand>
        <context>GGTTGAAATA[A/G]GCGTAGACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCAATAGCAGCGAGATAGAGGATGAACATTGGCACACTCTGGTTGAAATA</left_flank>
        <right_flank>GCGTAGACAATTTCGTTGAGCTGGGAGAAGACGACAGTTCCGATACCCGA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAGACAGCTAGAGTCATAAAGCTTGGCGAGAAGAGAAGATCCTTATCGAGAACCGAGTAGAGGGATTCCTTGAATTGCGTGAATTTCGACTTCTTGACGACGTGCACAACGGTATGCTGCTCGGTAGCATGGACGACATGGGCGGCTTCGGCTTTCTCCACTGAAATCTTATTGATTAAAAGAAGCCGAGTTCCTGAAACTCCTGAAGCTTAGAAACAAAGAAAAAACTCACAAGCCTCAACTGGCGGATTTCCAACATAGAATGCATCCGACTGGTGTCCAGGACGGTTGAGCTCATCCAAATCGTTACGAACATTTTCCAGAAGTCTCTCGGTTGGCTCCTCAGTTTTTCCTTCGTAGGCACGGACCATCTTGGCAACCTTCTTCACTTGTTGATCAGATGCTTTCAGGGGGGCGAAGAACAGAGAGAAGATGGCTCCAGTGGATGCAATAGCAGCGAGATAGAGGATGAACATTGGCACACTCTGGTTGAAATAAGCGTAGACAATTTCGTTGAGCTGGGAGAAGACGACAGTTCCGATACCCGATCCACATACAGCGATTCCTGTGGCCACGCTACGACGTTTAGCGAAATAGGTGGAGAGCACAACGATGGATGGGAGGTACATGGCTCCGAAACCGAGTCCAGCGAGAACTCCAAATGACAAATAGGTTGCGATTTGACCCTCGGTACGGCTGCAAAGCAGGAAGGCGGTGGTGGAGATGATGGATCCGGCGATGGCGACTGGACGAATTCCGAAGACGTTGACGAACGCGGCGACGATTGGACCTGGAATTCGAAGGATTTTCGAGTGACCGGGGGATCGTTAAAGTTCCTAAATCAGAGACTTCTCGGACCAGAAACCCCAGGTTCGGGAATTTCGGAAATATCTTACCACTGATGTAATAGCATCCGGTGAGAAGAGAGAAGGTGAGCGAAGCCGTAGCTTCGGAGCCGAATCTCAGCGCCCATGGCTTTTTGAGAATGTTGGCGACAG</canonical>
            <polymorphic>CAGAGACAGCTAGAGTCATAAAGCTTGGCGAGAAGAGAAGATCCTTATCGAGAACCGAGTAGAGGGATTCCTTGAATTGCGTGAATTTCGACTTCTTGACGACGTGCACAACGGTATGCTGCTCGGTAGCATGGACGACATGGGCGGCTTCGGCTTTCTCCACTGAAATCTTATTGATTAAAAGAAGCCGAGTTCCTGAAACTCCTGAAGCTTAGAAACAAAGAAAAAACTCACAAGCCTCAACTGGCGGATTTCCAACATAGAATGCATCCGACTGGTGTCCAGGACGGTTGAGCTCATCCAAATCGTTACGAACATTTTCCAGAAGTCTCTCGGTTGGCTCCTCAGTTTTTCCTTCGTAGGCACGGACCATCTTGGCAACCTTCTTCACTTGTTGATCAGATGCTTTCAGGGGGGCGAAGAACAGAGAGAAGATGGCTCCAGTGGATGCAATAGCAGCGAGATAGAGGATGAACATTGGCACACTCTGGTTGAAATARGCGTAGACAATTTCGTTGAGCTGGGAGAAGACGACAGTTCCGATACCCGATCCACATACAGCGATTCCTGTGGCCACGCTACGACGTTTAGCGAAATAGGTGGAGAGCACAACGATGGATGGGAGGTACATGGCTCCGAAACCGAGTCCAGCGAGAACTCCAAATGACAAATAGGTTGCGATTTGACCCTCGGTACGGCTGCAAAGCAGGAAGGCGGTGGTGGAGATGATGGATCCGGCGATGGCGACTGGACGAATTCCGAAGACGTTGACGAACGCGGCGACGATTGGACCTGGAATTCGAAGGATTTTCGAGTGACCGGGGGATCGTTAAAGTTCCTAAATCAGAGACTTCTCGGACCAGAAACCCCAGGTTCGGGAATTTCGGAAATATCTTACCACTGATGTAATAGCATCCGGTGAGAAGAGAGAAGGTGAGCGAAGCCGTAGCTTCGGAGCCGAATCTCAGCGCCCATGGCTTTTTGAGAATGTTGGCGACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACATTTTCCAGAAGTCTCTC</pcr_primer_p1>
		<pcr_primer_p2>CTGTATGTGGATCGGGTATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAACATTTTCCAGAAGTCTCTCGGTTGGCTCCTCAGTTTTTCCTTCGTAGGCACGGACCATCTTGGCAACCTTCTTCACTTGTTGATCAGATGCTTTCAGGGGGGCGAAGAACAGAGAGAAGATGGCTCCAGTGGATGCAATAGCAGCGAGATAGAGGATGAACATTGGCACACTCTGGTTGAAATAAGCGTAGACAATTTCGTTGAGCTGGGAGAAGACGACAGTTCCGATACCCGATCCACATACAG</canonical_amplicon>
		<polymorphic_amplicon>GAACATTTTCCAGAAGTCTCTCGGTTGGCTCCTCAGTTTTTCCTTCGTAGGCACGGACCATCTTGGCAACCTTCTTCACTTGTTGATCAGATGCTTTCAGGGGGGCGAAGAACAGAGAGAAGATGGCTCCAGTGGATGCAATAGCAGCGAGATAGAGGATGAACATTGGCACACTCTGGTTGAAATARGCGTAGACAATTTCGTTGAGCTGGGAGAAGACGACAGTTCCGATACCCGATCCACATACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16763</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>255600</contig_pos>
        <strand>+</strand>
        <context>GAACTCCAAA[C/T]GACAAATAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGGATGGGAGGTACATGGCTCCGAAACCGAGTCCAGCGAGAACTCCAAA</left_flank>
        <right_flank>GACAAATAGGTTGCGATTTGACCCTCGGTACGGCTGCAAAGCAGGAAGGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCTTATTGATTAAAAGAAGCCGAGTTCCTGAAACTCCTGAAGCTTAGAAACAAAGAAAAAACTCACAAGCCTCAACTGGCGGATTTCCAACATAGAATGCATCCGACTGGTGTCCAGGACGGTTGAGCTCATCCAAATCGTTACGAACATTTTCCAGAAGTCTCTCGGTTGGCTCCTCAGTTTTTCCTTCGTAGGCACGGACCATCTTGGCAACCTTCTTCACTTGTTGATCAGATGCTTTCAGGGGGGCGAAGAACAGAGAGAAGATGGCTCCAGTGGATGCAATAGCAGCGAGATAGAGGATGAACATTGGCACACTCTGGTTGAAATAAGCGTAGACAATTTCGTTGAGCTGGGAGAAGACGACAGTTCCGATACCCGATCCACATACAGCGATTCCTGTGGCCACGCTACGACGTTTAGCGAAATAGGTGGAGAGCACAACGATGGATGGGAGGTACATGGCTCCGAAACCGAGTCCAGCGAGAACTCCAAATGACAAATAGGTTGCGATTTGACCCTCGGTACGGCTGCAAAGCAGGAAGGCGGTGGTGGAGATGATGGATCCGGCGATGGCGACTGGACGAATTCCGAAGACGTTGACGAACGCGGCGACGATTGGACCTGGAATTCGAAGGATTTTCGAGTGACCGGGGGATCGTTAAAGTTCCTAAATCAGAGACTTCTCGGACCAGAAACCCCAGGTTCGGGAATTTCGGAAATATCTTACCACTGATGTAATAGCATCCGGTGAGAAGAGAGAAGGTGAGCGAAGCCGTAGCTTCGGAGCCGAATCTCAGCGCCCATGGCTTTTTGAGAATGTTGGCGACAGTGTAAATAATACCGTCCACAGCCATGTTGACGAGGAAACTCGCAGCGACGACCACCCATCCGTAGCCGCCTGGAAATTTCGGTCATTTTTTTAAACTTCAATTTCTGAAATTCCGAATCTTGAATACTAGAAGCCAATGACGTCATTTCAGTCGGAATTCAATTT</canonical>
            <polymorphic>AAATCTTATTGATTAAAAGAAGCCGAGTTCCTGAAACTCCTGAAGCTTAGAAACAAAGAAAAAACTCACAAGCCTCAACTGGCGGATTTCCAACATAGAATGCATCCGACTGGTGTCCAGGACGGTTGAGCTCATCCAAATCGTTACGAACATTTTCCAGAAGTCTCTCGGTTGGCTCCTCAGTTTTTCCTTCGTAGGCACGGACCATCTTGGCAACCTTCTTCACTTGTTGATCAGATGCTTTCAGGGGGGCGAAGAACAGAGAGAAGATGGCTCCAGTGGATGCAATAGCAGCGAGATAGAGGATGAACATTGGCACACTCTGGTTGAAATAAGCGTAGACAATTTCGTTGAGCTGGGAGAAGACGACAGTTCCGATACCCGATCCACATACAGCGATTCCTGTGGCCACGCTACGACGTTTAGCGAAATAGGTGGAGAGCACAACGATGGATGGGAGGTACATGGCTCCGAAACCGAGTCCAGCGAGAACTCCAAAYGACAAATAGGTTGCGATTTGACCCTCGGTACGGCTGCAAAGCAGGAAGGCGGTGGTGGAGATGATGGATCCGGCGATGGCGACTGGACGAATTCCGAAGACGTTGACGAACGCGGCGACGATTGGACCTGGAATTCGAAGGATTTTCGAGTGACCGGGGGATCGTTAAAGTTCCTAAATCAGAGACTTCTCGGACCAGAAACCCCAGGTTCGGGAATTTCGGAAATATCTTACCACTGATGTAATAGCATCCGGTGAGAAGAGAGAAGGTGAGCGAAGCCGTAGCTTCGGAGCCGAATCTCAGCGCCCATGGCTTTTTGAGAATGTTGGCGACAGTGTAAATAATACCGTCCACAGCCATGTTGACGAGGAAACTCGCAGCGACGACCACCCATCCGTAGCCGCCTGGAAATTTCGGTCATTTTTTTAAACTTCAATTTCTGAAATTCCGAATCTTGAATACTAGAAGCCAATGACGTCATTTCAGTCGGAATTCAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATAGGTGGAGAGCACAA</pcr_primer_p1>
		<pcr_primer_p2>GAAGTCTCTGATTTAGGAACTTTAAC</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>GAAATAGGTGGAGAGCACAACGATGGATGGGAGGTACATGGCTCCGAAACCGAGTCCAGCGAGAACTCCAAATGACAAATAGGTTGCGATTTGACCCTCGGTACGGCTGCAAAGCAGGAAGGCGGTGGTGGAGATGATGGATCCGGCGATGGCGACTGGACGAATTCCGAAGACGTTGACGAACGCGGCGACGATTGGACCTGGAATTCGAAGGATTTTCGAGTGACCGGGGGATCGTTAAAGTTCCTAAATCAGAGACTTC</canonical_amplicon>
		<polymorphic_amplicon>GAAATAGGTGGAGAGCACAACGATGGATGGGAGGTACATGGCTCCGAAACCGAGTCCAGCGAGAACTCCAAAYGACAAATAGGTTGCGATTTGACCCTCGGTACGGCTGCAAAGCAGGAAGGCGGTGGTGGAGATGATGGATCCGGCGATGGCGACTGGACGAATTCCGAAGACGTTGACGAACGCGGCGACGATTGGACCTGGAATTCGAAGGATTTTCGAGTGACCGGGGGATCGTTAAAGTTCCTAAATCAGAGACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16764</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>255681</contig_pos>
        <strand>+</strand>
        <context>CGGCGATGGC[G/T]ACTGGACGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGGCTGCAAAGCAGGAAGGCGGTGGTGGAGATGATGGATCCGGCGATGGC</left_flank>
        <right_flank>ACTGGACGAATTCCGAAGACGTTGACGAACGCGGCGACGATTGGACCTGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGGATTTCCAACATAGAATGCATCCGACTGGTGTCCAGGACGGTTGAGCTCATCCAAATCGTTACGAACATTTTCCAGAAGTCTCTCGGTTGGCTCCTCAGTTTTTCCTTCGTAGGCACGGACCATCTTGGCAACCTTCTTCACTTGTTGATCAGATGCTTTCAGGGGGGCGAAGAACAGAGAGAAGATGGCTCCAGTGGATGCAATAGCAGCGAGATAGAGGATGAACATTGGCACACTCTGGTTGAAATAAGCGTAGACAATTTCGTTGAGCTGGGAGAAGACGACAGTTCCGATACCCGATCCACATACAGCGATTCCTGTGGCCACGCTACGACGTTTAGCGAAATAGGTGGAGAGCACAACGATGGATGGGAGGTACATGGCTCCGAAACCGAGTCCAGCGAGAACTCCAAATGACAAATAGGTTGCGATTTGACCCTCGGTACGGCTGCAAAGCAGGAAGGCGGTGGTGGAGATGATGGATCCGGCGATGGCGACTGGACGAATTCCGAAGACGTTGACGAACGCGGCGACGATTGGACCTGGAATTCGAAGGATTTTCGAGTGACCGGGGGATCGTTAAAGTTCCTAAATCAGAGACTTCTCGGACCAGAAACCCCAGGTTCGGGAATTTCGGAAATATCTTACCACTGATGTAATAGCATCCGGTGAGAAGAGAGAAGGTGAGCGAAGCCGTAGCTTCGGAGCCGAATCTCAGCGCCCATGGCTTTTTGAGAATGTTGGCGACAGTGTAAATAATACCGTCCACAGCCATGTTGACGAGGAAACTCGCAGCGACGACCACCCATCCGTAGCCGCCTGGAAATTTCGGTCATTTTTTTAAACTTCAATTTCTGAAATTCCGAATCTTGAATACTAGAAGCCAATGACGTCATTTCAGTCGGAATTCAATTTAAAAAAAAACGGTTTGGAACATAAAACTATTATTGTTTTGTGGGGGAGGGGAGGAAAATAAGCAAAAACCAACTGATCAGA</canonical>
            <polymorphic>GCGGATTTCCAACATAGAATGCATCCGACTGGTGTCCAGGACGGTTGAGCTCATCCAAATCGTTACGAACATTTTCCAGAAGTCTCTCGGTTGGCTCCTCAGTTTTTCCTTCGTAGGCACGGACCATCTTGGCAACCTTCTTCACTTGTTGATCAGATGCTTTCAGGGGGGCGAAGAACAGAGAGAAGATGGCTCCAGTGGATGCAATAGCAGCGAGATAGAGGATGAACATTGGCACACTCTGGTTGAAATAAGCGTAGACAATTTCGTTGAGCTGGGAGAAGACGACAGTTCCGATACCCGATCCACATACAGCGATTCCTGTGGCCACGCTACGACGTTTAGCGAAATAGGTGGAGAGCACAACGATGGATGGGAGGTACATGGCTCCGAAACCGAGTCCAGCGAGAACTCCAAATGACAAATAGGTTGCGATTTGACCCTCGGTACGGCTGCAAAGCAGGAAGGCGGTGGTGGAGATGATGGATCCGGCGATGGCKACTGGACGAATTCCGAAGACGTTGACGAACGCGGCGACGATTGGACCTGGAATTCGAAGGATTTTCGAGTGACCGGGGGATCGTTAAAGTTCCTAAATCAGAGACTTCTCGGACCAGAAACCCCAGGTTCGGGAATTTCGGAAATATCTTACCACTGATGTAATAGCATCCGGTGAGAAGAGAGAAGGTGAGCGAAGCCGTAGCTTCGGAGCCGAATCTCAGCGCCCATGGCTTTTTGAGAATGTTGGCGACAGTGTAAATAATACCGTCCACAGCCATGTTGACGAGGAAACTCGCAGCGACGACCACCCATCCGTAGCCGCCTGGAAATTTCGGTCATTTTTTTAAACTTCAATTTCTGAAATTCCGAATCTTGAATACTAGAAGCCAATGACGTCATTTCAGTCGGAATTCAATTTAAAAAAAAACGGTTTGGAACATAAAACTATTATTGTTTTGTGGGGGAGGGGAGGAAAATAAGCAAAAACCAACTGATCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAATAGGTTGCGATTTGAC</pcr_primer_p1>
		<pcr_primer_p2>GGATGCTATTACATCAGTGGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAATAGGTTGCGATTTGACCCTCGGTACGGCTGCAAAGCAGGAAGGCGGTGGTGGAGATGATGGATCCGGCGATGGCGACTGGACGAATTCCGAAGACGTTGACGAACGCGGCGACGATTGGACCTGGAATTCGAAGGATTTTCGAGTGACCGGGGGATCGTTAAAGTTCCTAAATCAGAGACTTCTCGGACCAGAAACCCCAGGTTCGGGAATTTCGGAAATATCTTACCACTGATGTAATAGCATCC</canonical_amplicon>
		<polymorphic_amplicon>CAAATAGGTTGCGATTTGACCCTCGGTACGGCTGCAAAGCAGGAAGGCGGTGGTGGAGATGATGGATCCGGCGATGGCKACTGGACGAATTCCGAAGACGTTGACGAACGCGGCGACGATTGGACCTGGAATTCGAAGGATTTTCGAGTGACCGGGGGATCGTTAAAGTTCCTAAATCAGAGACTTCTCGGACCAGAAACCCCAGGTTCGGGAATTTCGGAAATATCTTACCACTGATGTAATAGCATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16765</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>255736</contig_pos>
        <strand>+</strand>
        <context>ACCTGGAATT[A/C]GAAGGATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GACGAATTCCGAAGACGTTGACGAACGCGGCGACGATTGGACCTGGAATT</left_flank>
        <right_flank>GAAGGATTTTCGAGTGACCGGGGGATCGTTAAAGTTCCTAAATCAGAGAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAATCGTTACGAACATTTTCCAGAAGTCTCTCGGTTGGCTCCTCAGTTTTTCCTTCGTAGGCACGGACCATCTTGGCAACCTTCTTCACTTGTTGATCAGATGCTTTCAGGGGGGCGAAGAACAGAGAGAAGATGGCTCCAGTGGATGCAATAGCAGCGAGATAGAGGATGAACATTGGCACACTCTGGTTGAAATAAGCGTAGACAATTTCGTTGAGCTGGGAGAAGACGACAGTTCCGATACCCGATCCACATACAGCGATTCCTGTGGCCACGCTACGACGTTTAGCGAAATAGGTGGAGAGCACAACGATGGATGGGAGGTACATGGCTCCGAAACCGAGTCCAGCGAGAACTCCAAATGACAAATAGGTTGCGATTTGACCCTCGGTACGGCTGCAAAGCAGGAAGGCGGTGGTGGAGATGATGGATCCGGCGATGGCGACTGGACGAATTCCGAAGACGTTGACGAACGCGGCGACGATTGGACCTGGAATTCGAAGGATTTTCGAGTGACCGGGGGATCGTTAAAGTTCCTAAATCAGAGACTTCTCGGACCAGAAACCCCAGGTTCGGGAATTTCGGAAATATCTTACCACTGATGTAATAGCATCCGGTGAGAAGAGAGAAGGTGAGCGAAGCCGTAGCTTCGGAGCCGAATCTCAGCGCCCATGGCTTTTTGAGAATGTTGGCGACAGTGTAAATAATACCGTCCACAGCCATGTTGACGAGGAAACTCGCAGCGACGACCACCCATCCGTAGCCGCCTGGAAATTTCGGTCATTTTTTTAAACTTCAATTTCTGAAATTCCGAATCTTGAATACTAGAAGCCAATGACGTCATTTCAGTCGGAATTCAATTTAAAAAAAAACGGTTTGGAACATAAAACTATTATTGTTTTGTGGGGGAGGGGAGGAAAATAAGCAAAAACCAACTGATCAGAGAGCAAACGGTTTTTTGATTGAAGGAAATCTAGAAAATTCTAGAATTACGATTTT</canonical>
            <polymorphic>CAAATCGTTACGAACATTTTCCAGAAGTCTCTCGGTTGGCTCCTCAGTTTTTCCTTCGTAGGCACGGACCATCTTGGCAACCTTCTTCACTTGTTGATCAGATGCTTTCAGGGGGGCGAAGAACAGAGAGAAGATGGCTCCAGTGGATGCAATAGCAGCGAGATAGAGGATGAACATTGGCACACTCTGGTTGAAATAAGCGTAGACAATTTCGTTGAGCTGGGAGAAGACGACAGTTCCGATACCCGATCCACATACAGCGATTCCTGTGGCCACGCTACGACGTTTAGCGAAATAGGTGGAGAGCACAACGATGGATGGGAGGTACATGGCTCCGAAACCGAGTCCAGCGAGAACTCCAAATGACAAATAGGTTGCGATTTGACCCTCGGTACGGCTGCAAAGCAGGAAGGCGGTGGTGGAGATGATGGATCCGGCGATGGCGACTGGACGAATTCCGAAGACGTTGACGAACGCGGCGACGATTGGACCTGGAATTMGAAGGATTTTCGAGTGACCGGGGGATCGTTAAAGTTCCTAAATCAGAGACTTCTCGGACCAGAAACCCCAGGTTCGGGAATTTCGGAAATATCTTACCACTGATGTAATAGCATCCGGTGAGAAGAGAGAAGGTGAGCGAAGCCGTAGCTTCGGAGCCGAATCTCAGCGCCCATGGCTTTTTGAGAATGTTGGCGACAGTGTAAATAATACCGTCCACAGCCATGTTGACGAGGAAACTCGCAGCGACGACCACCCATCCGTAGCCGCCTGGAAATTTCGGTCATTTTTTTAAACTTCAATTTCTGAAATTCCGAATCTTGAATACTAGAAGCCAATGACGTCATTTCAGTCGGAATTCAATTTAAAAAAAAACGGTTTGGAACATAAAACTATTATTGTTTTGTGGGGGAGGGGAGGAAAATAAGCAAAAACCAACTGATCAGAGAGCAAACGGTTTTTTGATTGAAGGAAATCTAGAAAATTCTAGAATTACGATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>453 195 126 83 47 42 34 20</canonical_bands>
                <polymorphic_bands>453 195 126 125 47 34 20</polymorphic_bands>
            </assay>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>453 359 146 42</canonical_bands>
                <polymorphic_bands>453 401 146</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 489 11</canonical_bands>
                <polymorphic_bands>511 489</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATAGGTTGCGATTTGAC</pcr_primer_p1>
		<pcr_primer_p2>GGATGCTATTACATCAGTGGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAATAGGTTGCGATTTGACCCTCGGTACGGCTGCAAAGCAGGAAGGCGGTGGTGGAGATGATGGATCCGGCGATGGCGACTGGACGAATTCCGAAGACGTTGACGAACGCGGCGACGATTGGACCTGGAATTCGAAGGATTTTCGAGTGACCGGGGGATCGTTAAAGTTCCTAAATCAGAGACTTCTCGGACCAGAAACCCCAGGTTCGGGAATTTCGGAAATATCTTACCACTGATGTAATAGCATCC</canonical_amplicon>
		<polymorphic_amplicon>CAAATAGGTTGCGATTTGACCCTCGGTACGGCTGCAAAGCAGGAAGGCGGTGGTGGAGATGATGGATCCGGCGATGGCGACTGGACGAATTCCGAAGACGTTGACGAACGCGGCGACGATTGGACCTGGAATTMGAAGGATTTTCGAGTGACCGGGGGATCGTTAAAGTTCCTAAATCAGAGACTTCTCGGACCAGAAACCCCAGGTTCGGGAATTTCGGAAATATCTTACCACTGATGTAATAGCATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16766</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>255943</contig_pos>
        <strand>+</strand>
        <context>CAGTGTAAAT[A/G]ATACCGTCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGAATCTCAGCGCCCATGGCTTTTTGAGAATGTTGGCGACAGTGTAAAT</left_flank>
        <right_flank>ATACCGTCCACAGCCATGTTGACGAGGAAACTCGCAGCGACGACCACCCA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTCGTTGAGCTGGGAGAAGACGACAGTTCCGATACCCGATCCACATACAGCGATTCCTGTGGCCACGCTACGACGTTTAGCGAAATAGGTGGAGAGCACAACGATGGATGGGAGGTACATGGCTCCGAAACCGAGTCCAGCGAGAACTCCAAATGACAAATAGGTTGCGATTTGACCCTCGGTACGGCTGCAAAGCAGGAAGGCGGTGGTGGAGATGATGGATCCGGCGATGGCGACTGGACGAATTCCGAAGACGTTGACGAACGCGGCGACGATTGGACCTGGAATTCGAAGGATTTTCGAGTGACCGGGGGATCGTTAAAGTTCCTAAATCAGAGACTTCTCGGACCAGAAACCCCAGGTTCGGGAATTTCGGAAATATCTTACCACTGATGTAATAGCATCCGGTGAGAAGAGAGAAGGTGAGCGAAGCCGTAGCTTCGGAGCCGAATCTCAGCGCCCATGGCTTTTTGAGAATGTTGGCGACAGTGTAAATAATACCGTCCACAGCCATGTTGACGAGGAAACTCGCAGCGACGACCACCCATCCGTAGCCGCCTGGAAATTTCGGTCATTTTTTTAAACTTCAATTTCTGAAATTCCGAATCTTGAATACTAGAAGCCAATGACGTCATTTCAGTCGGAATTCAATTTAAAAAAAAACGGTTTGGAACATAAAACTATTATTGTTTTGTGGGGGAGGGGAGGAAAATAAGCAAAAACCAACTGATCAGAGAGCAAACGGTTTTTTGATTGAAGGAAATCTAGAAAATTCTAGAATTACGATTTTTAGGATTCAGAATCCTTGATTTGCATCCTAGATACTCAAATTTTGGTCTTCAGAAGGCAAAACAGAGTTTTTTAGATCTTCAAAATGAGTTAAAATTTCTACAGTGCTCCAGGAGTTTAGAATTTTGAGCAAGTCGATAGTAAGCTAGATTCTGACGTTTTCAGAATTCAGATTTTTTAAATGTGTCAAAAGGTCTACAGTAGTCCA</canonical>
            <polymorphic>AATTTCGTTGAGCTGGGAGAAGACGACAGTTCCGATACCCGATCCACATACAGCGATTCCTGTGGCCACGCTACGACGTTTAGCGAAATAGGTGGAGAGCACAACGATGGATGGGAGGTACATGGCTCCGAAACCGAGTCCAGCGAGAACTCCAAATGACAAATAGGTTGCGATTTGACCCTCGGTACGGCTGCAAAGCAGGAAGGCGGTGGTGGAGATGATGGATCCGGCGATGGCGACTGGACGAATTCCGAAGACGTTGACGAACGCGGCGACGATTGGACCTGGAATTCGAAGGATTTTCGAGTGACCGGGGGATCGTTAAAGTTCCTAAATCAGAGACTTCTCGGACCAGAAACCCCAGGTTCGGGAATTTCGGAAATATCTTACCACTGATGTAATAGCATCCGGTGAGAAGAGAGAAGGTGAGCGAAGCCGTAGCTTCGGAGCCGAATCTCAGCGCCCATGGCTTTTTGAGAATGTTGGCGACAGTGTAAATRATACCGTCCACAGCCATGTTGACGAGGAAACTCGCAGCGACGACCACCCATCCGTAGCCGCCTGGAAATTTCGGTCATTTTTTTAAACTTCAATTTCTGAAATTCCGAATCTTGAATACTAGAAGCCAATGACGTCATTTCAGTCGGAATTCAATTTAAAAAAAAACGGTTTGGAACATAAAACTATTATTGTTTTGTGGGGGAGGGGAGGAAAATAAGCAAAAACCAACTGATCAGAGAGCAAACGGTTTTTTGATTGAAGGAAATCTAGAAAATTCTAGAATTACGATTTTTAGGATTCAGAATCCTTGATTTGCATCCTAGATACTCAAATTTTGGTCTTCAGAAGGCAAAACAGAGTTTTTTAGATCTTCAAAATGAGTTAAAATTTCTACAGTGCTCCAGGAGTTTAGAATTTTGAGCAAGTCGATAGTAAGCTAGATTCTGACGTTTTCAGAATTCAGATTTTTTAAATGTGTCAAAAGGTCTACAGTAGTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATCTTACCACTGATGTAATAGCA</pcr_primer_p1>
		<pcr_primer_p2>CATTGGCTTCTAGTATTCAAGATT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATATCTTACCACTGATGTAATAGCATCCGGTGAGAAGAGAGAAGGTGAGCGAAGCCGTAGCTTCGGAGCCGAATCTCAGCGCCCATGGCTTTTTGAGAATGTTGGCGACAGTGTAAATAATACCGTCCACAGCCATGTTGACGAGGAAACTCGCAGCGACGACCACCCATCCGTAGCCGCCTGGAAATTTCGGTCATTTTTTTAAACTTCAATTTCTGAAATTCCGAATCTTGAATACTAGAAGCCAATG</canonical_amplicon>
		<polymorphic_amplicon>AATATCTTACCACTGATGTAATAGCATCCGGTGAGAAGAGAGAAGGTGAGCGAAGCCGTAGCTTCGGAGCCGAATCTCAGCGCCCATGGCTTTTTGAGAATGTTGGCGACAGTGTAAATRATACCGTCCACAGCCATGTTGACGAGGAAACTCGCAGCGACGACCACCCATCCGTAGCCGCCTGGAAATTTCGGTCATTTTTTTAAACTTCAATTTCTGAAATTCCGAATCTTGAATACTAGAAGCCAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16767</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>257621</contig_pos>
        <strand>+</strand>
        <context>TCAATTAAAA[G/T]AAATTAAAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGAAAAACGGTCGATTTTCAAATCAAAAAGGAAGTTTCTGTCAATTAAAA</left_flank>
        <right_flank>AAATTAAAGGACAATTTCCAAAGTGCACCCCTTTGTGTGCGGAGGTTCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGAAAGAAAGGGAAATCATCAATTTATCAATATAAAAATGATATGAAGAAACAGCCATCCCACTTGAAGAGCCTTTTTCTCGGCACGCTTGGGGCATTAAATGAATGACAATTCCGCCTGTTGGGGGATATATTGAGGATCGAAAAGGGGGCGGGGCTTAGGGCTCTGTATGTTTTGATTACAACGTCCCGTGCGCAAGGGGCAGATGACGAAATTGAGAAACAATGAAAAACACAGAAAAAATTCAGGAGACGAGATAGTGCAGGATTTCCGGAGAGCGCCTATTTGTCACTGCATATAGTGACGAATTTAATGGGGAAGGAAAACAAGCTACAGTACTCCCGAGAACAGAAGTCTAGAAAGCAAAGGAAACGACAATGAAAGCCAACGTGCATAGAACCTACAGTAGTCGAGAATGGCTAGATTGCTTATACAGCGTTTTTAACTGGAAAAACGGTCGATTTTCAAATCAAAAAGGAAGTTTCTGTCAATTAAAAGAAATTAAAGGACAATTTCCAAAGTGCACCCCTTTGTGTGCGGAGGTTCAATGGGCGTCCAAAGTGGCACCATAATGACCTCTTTATCAGTGGAAATACGCTTTTTTGAATTGACGACGGCACGGCAGCCAGCTGACCGACACAGTGGATTGTCAGCGAAAATTGCTTATCAGTAGTTTTCAGAGGAAACAAAAAACGCTTCAAACTCAATTTATTAGTTTTTTAACAACGGATGGTTGGTGGGCGAGAACGAAGGAGAACATTTTCTATTTCTAGGATAAGATCAAAGGGAATAGTGCCGCCGTTTCTGAAAAGTAAATTTCAGTGTCTGAAATTTTCAGACTTTCGATTGCAAAGGGAAGAAATGCTGCTTCTAAACCCTATTCTGAAGGAATACTTTTTTAGACTATGTGAATCCCTCTATCAGATCCTAGAAGTCTCCAGAATCCCATGACGCTGTTTCTGAACCCCTTGGCCTGAAATACCAAAACTTTTAGACTT</canonical>
            <polymorphic>GGAGAAAGAAAGGGAAATCATCAATTTATCAATATAAAAATGATATGAAGAAACAGCCATCCCACTTGAAGAGCCTTTTTCTCGGCACGCTTGGGGCATTAAATGAATGACAATTCCGCCTGTTGGGGGATATATTGAGGATCGAAAAGGGGGCGGGGCTTAGGGCTCTGTATGTTTTGATTACAACGTCCCGTGCGCAAGGGGCAGATGACGAAATTGAGAAACAATGAAAAACACAGAAAAAATTCAGGAGACGAGATAGTGCAGGATTTCCGGAGAGCGCCTATTTGTCACTGCATATAGTGACGAATTTAATGGGGAAGGAAAACAAGCTACAGTACTCCCGAGAACAGAAGTCTAGAAAGCAAAGGAAACGACAATGAAAGCCAACGTGCATAGAACCTACAGTAGTCGAGAATGGCTAGATTGCTTATACAGCGTTTTTAACTGGAAAAACGGTCGATTTTCAAATCAAAAAGGAAGTTTCTGTCAATTAAAAKAAATTAAAGGACAATTTCCAAAGTGCACCCCTTTGTGTGCGGAGGTTCAATGGGCGTCCAAAGTGGCACCATAATGACCTCTTTATCAGTGGAAATACGCTTTTTTGAATTGACGACGGCACGGCAGCCAGCTGACCGACACAGTGGATTGTCAGCGAAAATTGCTTATCAGTAGTTTTCAGAGGAAACAAAAAACGCTTCAAACTCAATTTATTAGTTTTTTAACAACGGATGGTTGGTGGGCGAGAACGAAGGAGAACATTTTCTATTTCTAGGATAAGATCAAAGGGAATAGTGCCGCCGTTTCTGAAAAGTAAATTTCAGTGTCTGAAATTTTCAGACTTTCGATTGCAAAGGGAAGAAATGCTGCTTCTAAACCCTATTCTGAAGGAATACTTTTTTAGACTATGTGAATCCCTCTATCAGATCCTAGAAGTCTCCAGAATCCCATGACGCTGTTTCTGAACCCCTTGGCCTGAAATACCAAAACTTTTAGACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACAGAAGTCTAGAAAGCAAAG</pcr_primer_p1>
		<pcr_primer_p2>TATTTCCACTGATAAAGAGGTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAACAGAAGTCTAGAAAGCAAAGGAAACGACAATGAAAGCCAACGTGCATAGAACCTACAGTAGTCGAGAATGGCTAGATTGCTTATACAGCGTTTTTAACTGGAAAAACGGTCGATTTTCAAATCAAAAAGGAAGTTTCTGTCAATTAAAAGAAATTAAAGGACAATTTCCAAAGTGCACCCCTTTGTGTGCGGAGGTTCAATGGGCGTCCAAAGTGGCACCATAATGACCTCTTTATCAGTGGAAATA</canonical_amplicon>
		<polymorphic_amplicon>GAACAGAAGTCTAGAAAGCAAAGGAAACGACAATGAAAGCCAACGTGCATAGAACCTACAGTAGTCGAGAATGGCTAGATTGCTTATACAGCGTTTTTAACTGGAAAAACGGTCGATTTTCAAATCAAAAAGGAAGTTTCTGTCAATTAAAAKAAATTAAAGGACAATTTCCAAAGTGCACCCCTTTGTGTGCGGAGGTTCAATGGGCGTCCAAAGTGGCACCATAATGACCTCTTTATCAGTGGAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16768</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>257516</contig_pos>
        <strand>+</strand>
        <context>AGCCAACGTG[C/T]ATAGAACCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAGAACAGAAGTCTAGAAAGCAAAGGAAACGACAATGAAAGCCAACGTG</left_flank>
        <right_flank>ATAGAACCTACAGTAGTCGAGAATGGCTAGATTGCTTATACAGCGTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAAATCGTCAAGGTCTTCCTTCTCCCCCCACGTGGGGGGACGGTCTCCTCGAAGAGCAAATAGATCAAAGCCAACAGATAGTAGTGGCGGATGAAAAAGAAGGAGAAAGAAAGGGAAATCATCAATTTATCAATATAAAAATGATATGAAGAAACAGCCATCCCACTTGAAGAGCCTTTTTCTCGGCACGCTTGGGGCATTAAATGAATGACAATTCCGCCTGTTGGGGGATATATTGAGGATCGAAAAGGGGGCGGGGCTTAGGGCTCTGTATGTTTTGATTACAACGTCCCGTGCGCAAGGGGCAGATGACGAAATTGAGAAACAATGAAAAACACAGAAAAAATTCAGGAGACGAGATAGTGCAGGATTTCCGGAGAGCGCCTATTTGTCACTGCATATAGTGACGAATTTAATGGGGAAGGAAAACAAGCTACAGTACTCCCGAGAACAGAAGTCTAGAAAGCAAAGGAAACGACAATGAAAGCCAACGTGCATAGAACCTACAGTAGTCGAGAATGGCTAGATTGCTTATACAGCGTTTTTAACTGGAAAAACGGTCGATTTTCAAATCAAAAAGGAAGTTTCTGTCAATTAAAAGAAATTAAAGGACAATTTCCAAAGTGCACCCCTTTGTGTGCGGAGGTTCAATGGGCGTCCAAAGTGGCACCATAATGACCTCTTTATCAGTGGAAATACGCTTTTTTGAATTGACGACGGCACGGCAGCCAGCTGACCGACACAGTGGATTGTCAGCGAAAATTGCTTATCAGTAGTTTTCAGAGGAAACAAAAAACGCTTCAAACTCAATTTATTAGTTTTTTAACAACGGATGGTTGGTGGGCGAGAACGAAGGAGAACATTTTCTATTTCTAGGATAAGATCAAAGGGAATAGTGCCGCCGTTTCTGAAAAGTAAATTTCAGTGTCTGAAATTTTCAGACTTTCGATTGCAAAGGGAAGAAATGCTGCTTCTAAACCCTATTCTGAAGGAATA</canonical>
            <polymorphic>AAAAAAAATCGTCAAGGTCTTCCTTCTCCCCCCACGTGGGGGGACGGTCTCCTCGAAGAGCAAATAGATCAAAGCCAACAGATAGTAGTGGCGGATGAAAAAGAAGGAGAAAGAAAGGGAAATCATCAATTTATCAATATAAAAATGATATGAAGAAACAGCCATCCCACTTGAAGAGCCTTTTTCTCGGCACGCTTGGGGCATTAAATGAATGACAATTCCGCCTGTTGGGGGATATATTGAGGATCGAAAAGGGGGCGGGGCTTAGGGCTCTGTATGTTTTGATTACAACGTCCCGTGCGCAAGGGGCAGATGACGAAATTGAGAAACAATGAAAAACACAGAAAAAATTCAGGAGACGAGATAGTGCAGGATTTCCGGAGAGCGCCTATTTGTCACTGCATATAGTGACGAATTTAATGGGGAAGGAAAACAAGCTACAGTACTCCCGAGAACAGAAGTCTAGAAAGCAAAGGAAACGACAATGAAAGCCAACGTGYATAGAACCTACAGTAGTCGAGAATGGCTAGATTGCTTATACAGCGTTTTTAACTGGAAAAACGGTCGATTTTCAAATCAAAAAGGAAGTTTCTGTCAATTAAAAGAAATTAAAGGACAATTTCCAAAGTGCACCCCTTTGTGTGCGGAGGTTCAATGGGCGTCCAAAGTGGCACCATAATGACCTCTTTATCAGTGGAAATACGCTTTTTTGAATTGACGACGGCACGGCAGCCAGCTGACCGACACAGTGGATTGTCAGCGAAAATTGCTTATCAGTAGTTTTCAGAGGAAACAAAAAACGCTTCAAACTCAATTTATTAGTTTTTTAACAACGGATGGTTGGTGGGCGAGAACGAAGGAGAACATTTTCTATTTCTAGGATAAGATCAAAGGGAATAGTGCCGCCGTTTCTGAAAAGTAAATTTCAGTGTCTGAAATTTTCAGACTTTCGATTGCAAAGGGAAGAAATGCTGCTTCTAAACCCTATTCTGAAGGAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>369 326 131 98 44 32</canonical_bands>
                <polymorphic_bands>369 326 229 44 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTCAGGAGACGAGATAGT</pcr_primer_p1>
		<pcr_primer_p2>GACAGAAACTTCCTTTTTGATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTCAGGAGACGAGATAGTGCAGGATTTCCGGAGAGCGCCTATTTGTCACTGCATATAGTGACGAATTTAATGGGGAAGGAAAACAAGCTACAGTACTCCCGAGAACAGAAGTCTAGAAAGCAAAGGAAACGACAATGAAAGCCAACGTGCATAGAACCTACAGTAGTCGAGAATGGCTAGATTGCTTATACAGCGTTTTTAACTGGAAAAACGGTCGATTTTCAAATCAAAAAGGAAGTTTCTGTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTCAGGAGACGAGATAGTGCAGGATTTCCGGAGAGCGCCTATTTGTCACTGCATATAGTGACGAATTTAATGGGGAAGGAAAACAAGCTACAGTACTCCCGAGAACAGAAGTCTAGAAAGCAAAGGAAACGACAATGAAAGCCAACGTGYATAGAACCTACAGTAGTCGAGAATGGCTAGATTGCTTATACAGCGTTTTTAACTGGAAAAACGGTCGATTTTCAAATCAAAAAGGAAGTTTCTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16769</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>257222</contig_pos>
        <strand>+</strand>
        <context>TTGGGGCATT[A/G]AATGAATGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACAGCCATCCCACTTGAAGAGCCTTTTTCTCGGCACGCTTGGGGCATT</left_flank>
        <right_flank>AATGAATGACAATTCCGCCTGTTGGGGGATATATTGAGGATCGAAAAGGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTCTCTGACTCCTACAGTAACCTGCACCCATCTAAAACTCACCATCTGGCGGCGTGACTTTTCCAACCTCCTCGACCTTCTCCTCGAAATCCTCGGCAGCCGTCACGGCGATGCTCAACTCCTTCTTCTTCGGCCCGTCATGGATCGGTTGTTTGGACATGGTGTCTGTAAAAAAAATTGTAAAAAGGGTAAAACGGACGGCTGAGGTTGCAAAAAGTGATCAAAAAATTACGTCGCGCGGGTCGGGCAGCAAAAAAAATCCCGGGTTAAGCAGAGGTTTAAATAAAGGAGTGAAAAAAAATCGTCAAGGTCTTCCTTCTCCCCCCACGTGGGGGGACGGTCTCCTCGAAGAGCAAATAGATCAAAGCCAACAGATAGTAGTGGCGGATGAAAAAGAAGGAGAAAGAAAGGGAAATCATCAATTTATCAATATAAAAATGATATGAAGAAACAGCCATCCCACTTGAAGAGCCTTTTTCTCGGCACGCTTGGGGCATTAAATGAATGACAATTCCGCCTGTTGGGGGATATATTGAGGATCGAAAAGGGGGCGGGGCTTAGGGCTCTGTATGTTTTGATTACAACGTCCCGTGCGCAAGGGGCAGATGACGAAATTGAGAAACAATGAAAAACACAGAAAAAATTCAGGAGACGAGATAGTGCAGGATTTCCGGAGAGCGCCTATTTGTCACTGCATATAGTGACGAATTTAATGGGGAAGGAAAACAAGCTACAGTACTCCCGAGAACAGAAGTCTAGAAAGCAAAGGAAACGACAATGAAAGCCAACGTGCATAGAACCTACAGTAGTCGAGAATGGCTAGATTGCTTATACAGCGTTTTTAACTGGAAAAACGGTCGATTTTCAAATCAAAAAGGAAGTTTCTGTCAATTAAAAGAAATTAAAGGACAATTTCCAAAGTGCACCCCTTTGTGTGCGGAGGTTCAATGGGCGTCCAAAGTGGCACCATAATGACCTCTTTATCAGTGGAAATACGCT</canonical>
            <polymorphic>CCTCTCTGACTCCTACAGTAACCTGCACCCATCTAAAACTCACCATCTGGCGGCGTGACTTTTCCAACCTCCTCGACCTTCTCCTCGAAATCCTCGGCAGCCGTCACGGCGATGCTCAACTCCTTCTTCTTCGGCCCGTCATGGATCGGTTGTTTGGACATGGTGTCTGTAAAAAAAATTGTAAAAAGGGTAAAACGGACGGCTGAGGTTGCAAAAAGTGATCAAAAAATTACGTCGCGCGGGTCGGGCAGCAAAAAAAATCCCGGGTTAAGCAGAGGTTTAAATAAAGGAGTGAAAAAAAATCGTCAAGGTCTTCCTTCTCCCCCCACGTGGGGGGACGGTCTCCTCGAAGAGCAAATAGATCAAAGCCAACAGATAGTAGTGGCGGATGAAAAAGAAGGAGAAAGAAAGGGAAATCATCAATTTATCAATATAAAAATGATATGAAGAAACAGCCATCCCACTTGAAGAGCCTTTTTCTCGGCACGCTTGGGGCATTRAATGAATGACAATTCCGCCTGTTGGGGGATATATTGAGGATCGAAAAGGGGGCGGGGCTTAGGGCTCTGTATGTTTTGATTACAACGTCCCGTGCGCAAGGGGCAGATGACGAAATTGAGAAACAATGAAAAACACAGAAAAAATTCAGGAGACGAGATAGTGCAGGATTTCCGGAGAGCGCCTATTTGTCACTGCATATAGTGACGAATTTAATGGGGAAGGAAAACAAGCTACAGTACTCCCGAGAACAGAAGTCTAGAAAGCAAAGGAAACGACAATGAAAGCCAACGTGCATAGAACCTACAGTAGTCGAGAATGGCTAGATTGCTTATACAGCGTTTTTAACTGGAAAAACGGTCGATTTTCAAATCAAAAAGGAAGTTTCTGTCAATTAAAAGAAATTAAAGGACAATTTCCAAAGTGCACCCCTTTGTGTGCGGAGGTTCAATGGGCGTCCAAAGTGGCACCATAATGACCTCTTTATCAGTGGAAATACGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>268 218 213 132 97 50 12 10</canonical_bands>
                <polymorphic_bands>431 268 132 97 50 12 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCCTCGAAGAGCAAATAGAT</pcr_primer_p1>
		<pcr_primer_p2>ACGTTGTAATCAAAACATACAGAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTCCTCGAAGAGCAAATAGATCAAAGCCAACAGATAGTAGTGGCGGATGAAAAAGAAGGAGAAAGAAAGGGAAATCATCAATTTATCAATATAAAAATGATATGAAGAAACAGCCATCCCACTTGAAGAGCCTTTTTCTCGGCACGCTTGGGGCATTAAATGAATGACAATTCCGCCTGTTGGGGGATATATTGAGGATCGAAAAGGGGGCGGGGCTTAGGGCTCTGTATGTTTTGATTACAACGT</canonical_amplicon>
		<polymorphic_amplicon>CTCCTCGAAGAGCAAATAGATCAAAGCCAACAGATAGTAGTGGCGGATGAAAAAGAAGGAGAAAGAAAGGGAAATCATCAATTTATCAATATAAAAATGATATGAAGAAACAGCCATCCCACTTGAAGAGCCTTTTTCTCGGCACGCTTGGGGCATTRAATGAATGACAATTCCGCCTGTTGGGGGATATATTGAGGATCGAAAAGGGGGCGGGGCTTAGGGCTCTGTATGTTTTGATTACAACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16770</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>316895</contig_pos>
        <strand></strand>
        <context>TTAATTGAAA[C/A]ATTGtaaaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTGTTTTTTATTCGCTAAAAAATTTCAAATCTTCAATTTTTTAATTGAAA</left_flank>
        <right_flank>ATTGTAAAAAAAAATTTAAAAATTTAAAGTTTCTCAGAATTTCAGAACAT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACAATTTACTTTTTTGAATTGCAAAATTACGATAGAAAAAAGTTCCGGTTTCATTCTGAATTGTTCGAAACTTTTCAACAATTTGATATTGAAAGAAAAAGGTTTAATCAAAACATTCAAATAGAAACAGATGAAACATTTTATTTTCGAAAATAAAAAACCAATCACACAATCTGAGAAATTGACAAAAGCAGTACCACGATAATCAAATCCAGGTTTTTGGCGAATTTGTACGGTGGACGAGTATTTGCTTCTTTTATGAGAGTGTCTAAAAGTATTTTAAAAAGACTGTTAGACTTTCAAAGAACAATCTTACAACAACTTTTCCCATCGAAGCTTGGTCTTTCCCAACCGTCTTGACCAAGTTCGTTTTCAAAAAATGAGCAATACTTTGGGTCCAAAATGAACTCCTGGGTGTTATTTGTAAACACAACTGACGATTCTCCATTGTTTTTTATTCGCTAAAAAATTTCAAATCTTCAATTTTTTAATTGAAACATTGTAAAAAAAAATTTAAAAATTTAAAGTTTCTCAGAATTTCAGAACATCTAGAAATTCAATTTTTTGATTTTTCAAAATTCAGAAAAAATGTTTTTTGTTAAATTTTTTAGTTATATAAAACTAACTTAAACAAACCTTGAGATTTGGAAATGAGAAATTCGATAGATACGGATTATTTTGAACAGTAATCGCTGGATAGCCATCTGAAAAATTTTCAAAATTGATTTCTCAAATTGAATTTTTTTTCAAATCTCTAAATATTAAAAAAAAAACTCACATCCCAATGCTGAAATATACTTCAGATTTTGCAAAAAATCAATAGTCGTCAAGTTGGTTTTTTCGATGTATAAAACTCCGAAAATGATTTCCACCGAGCTCAATTTTTGTACATTTTGCACATTTTTGGAATTGATAACCAATTTTCCAAACATCTGTGTGCATCCATCTTGAATTTCGGTTTCCTCATCCACGTTATACGAAGCGTTGCACAACTTTCC</canonical>
            <polymorphic>TCACAATTTACTTTTTTGAATTGCAAAATTACGATAGAAAAAAGTTCCGGTTTCATTCTGAATTGTTCGAAACTTTTCAACAATTTGATATTGAAAGAAAAAGGTTTAATCAAAACATTCAAATAGAAACAGATGAAACATTTTATTTTCGAAAATAAAAAACCAATCACACAATCTGAGAAATTGACAAAAGCAGTACCACGATAATCAAATCCAGGTTTTTGGCGAATTTGTACGGTGGACGAGTATTTGCTTCTTTTATGAGAGTGTCTAAAAGTATTTTAAAAAGACTGTTAGACTTTCAAAGAACAATCTTACAACAACTTTTCCCATCGAAGCTTGGTCTTTCCCAACCGTCTTGACCAAGTTCGTTTTCAAAAAATGAGCAATACTTTGGGTCCAAAATGAACTCCTGGGTGTTATTTGTAAACACAACTGACGATTCTCCATTGTTTTTTATTCGCTAAAAAATTTCAAATCTTCAATTTTTTAATTGAAAMATTGTAAAAAAAAATTTAAAAATTTAAAGTTTCTCAGAATTTCAGAACATCTAGAAATTCAATTTTTTGATTTTTCAAAATTCAGAAAAAATGTTTTTTGTTAAATTTTTTAGTTATATAAAACTAACTTAAACAAACCTTGAGATTTGGAAATGAGAAATTCGATAGATACGGATTATTTTGAACAGTAATCGCTGGATAGCCATCTGAAAAATTTTCAAAATTGATTTCTCAAATTGAATTTTTTTTCAAATCTCTAAATATTAAAAAAAAAACTCACATCCCAATGCTGAAATATACTTCAGATTTTGCAAAAAATCAATAGTCGTCAAGTTGGTTTTTTCGATGTATAAAACTCCGAAAATGATTTCCACCGAGCTCAATTTTTGTACATTTTGCACATTTTTGGAATTGATAACCAATTTTCCAAACATCTGTGTGCATCCATCTTGAATTTCGGTTTCCTCATCCACGTTATACGAAGCGTTGCACAACTTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAAACACAACTGACGATTCT</pcr_primer_p1>
		<pcr_primer_p2>CGTATCTATCGAATTTCTCATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTAAACACAACTGACGATTCTCCATTGTTTTTTATTCGCTAAAAAATTTCAAATCTTCAATTTTTTAATTGAAACATTGTAAAAAAAAATTTAAAAATTTAAAGTTTCTCAGAATTTCAGAACATCTAGAAATTCAATTTTTTGATTTTTCAAAATTCAGAAAAAATGTTTTTTGTTAAATTTTTTAGTTATATAAAACTAACTTAAACAAACCTTGAGATTTGGAAATGAGAAATTCGATAGATACG</canonical_amplicon>
		<polymorphic_amplicon>TGTAAACACAACTGACGATTCTCCATTGTTTTTTATTCGCTAAAAAATTTCAAATCTTCAATTTTTTAATTGAAAMATTGTAAAAAAAAATTTAAAAATTTAAAGTTTCTCAGAATTTCAGAACATCTAGAAATTCAATTTTTTGATTTTTCAAAATTCAGAAAAAATGTTTTTTGTTAAATTTTTTAGTTATATAAAACTAACTTAAACAAACCTTGAGATTTGGAAATGAGAAATTCGATAGATACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16771</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>316768</contig_pos>
        <strand></strand>
        <context>CCAAGTTCGT[T/C]TTCAAAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACTTTTCCCATCGAAGCTTGGTCTTTCCCAACCGTCTTGACCAAGTTCGT</left_flank>
        <right_flank>TTCAAAAAATGAGCAATACTTTGGGTCCAAAATGAACTCCTGGGTGTTAT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGGGGTTCTCTAGGCAAAATATCATGAAACTTTTTTTTATGCCTATCCTCCTTTAAAGTGTGAAAAAAAGGATTTTCCCAGGAGGCGGGACTACACAGGTCAAGAAATGACAACATTACCGTTTTTCACAATTTACTTTTTTGAATTGCAAAATTACGATAGAAAAAAGTTCCGGTTTCATTCTGAATTGTTCGAAACTTTTCAACAATTTGATATTGAAAGAAAAAGGTTTAATCAAAACATTCAAATAGAAACAGATGAAACATTTTATTTTCGAAAATAAAAAACCAATCACACAATCTGAGAAATTGACAAAAGCAGTACCACGATAATCAAATCCAGGTTTTTGGCGAATTTGTACGGTGGACGAGTATTTGCTTCTTTTATGAGAGTGTCTAAAAGTATTTTAAAAAGACTGTTAGACTTTCAAAGAACAATCTTACAACAACTTTTCCCATCGAAGCTTGGTCTTTCCCAACCGTCTTGACCAAGTTCGTTTTCAAAAAATGAGCAATACTTTGGGTCCAAAATGAACTCCTGGGTGTTATTTGTAAACACAACTGACGATTCTCCATTGTTTTTTATTCGCTAAAAAATTTCAAATCTTCAATTTTTTAATTGAAACATTGTAAAAAAAAATTTAAAAATTTAAAGTTTCTCAGAATTTCAGAACATCTAGAAATTCAATTTTTTGATTTTTCAAAATTCAGAAAAAATGTTTTTTGTTAAATTTTTTAGTTATATAAAACTAACTTAAACAAACCTTGAGATTTGGAAATGAGAAATTCGATAGATACGGATTATTTTGAACAGTAATCGCTGGATAGCCATCTGAAAAATTTTCAAAATTGATTTCTCAAATTGAATTTTTTTTCAAATCTCTAAATATTAAAAAAAAAACTCACATCCCAATGCTGAAATATACTTCAGATTTTGCAAAAAATCAATAGTCGTCAAGTTGGTTTTTTCGATGTATAAAACTCCGAAAATGATTTCCA</canonical>
            <polymorphic>ATGGGGGTTCTCTAGGCAAAATATCATGAAACTTTTTTTTATGCCTATCCTCCTTTAAAGTGTGAAAAAAAGGATTTTCCCAGGAGGCGGGACTACACAGGTCAAGAAATGACAACATTACCGTTTTTCACAATTTACTTTTTTGAATTGCAAAATTACGATAGAAAAAAGTTCCGGTTTCATTCTGAATTGTTCGAAACTTTTCAACAATTTGATATTGAAAGAAAAAGGTTTAATCAAAACATTCAAATAGAAACAGATGAAACATTTTATTTTCGAAAATAAAAAACCAATCACACAATCTGAGAAATTGACAAAAGCAGTACCACGATAATCAAATCCAGGTTTTTGGCGAATTTGTACGGTGGACGAGTATTTGCTTCTTTTATGAGAGTGTCTAAAAGTATTTTAAAAAGACTGTTAGACTTTCAAAGAACAATCTTACAACAACTTTTCCCATCGAAGCTTGGTCTTTCCCAACCGTCTTGACCAAGTTCGTYTTCAAAAAATGAGCAATACTTTGGGTCCAAAATGAACTCCTGGGTGTTATTTGTAAACACAACTGACGATTCTCCATTGTTTTTTATTCGCTAAAAAATTTCAAATCTTCAATTTTTTAATTGAAACATTGTAAAAAAAAATTTAAAAATTTAAAGTTTCTCAGAATTTCAGAACATCTAGAAATTCAATTTTTTGATTTTTCAAAATTCAGAAAAAATGTTTTTTGTTAAATTTTTTAGTTATATAAAACTAACTTAAACAAACCTTGAGATTTGGAAATGAGAAATTCGATAGATACGGATTATTTTGAACAGTAATCGCTGGATAGCCATCTGAAAAATTTTCAAAATTGATTTCTCAAATTGAATTTTTTTTCAAATCTCTAAATATTAAAAAAAAAACTCACATCCCAATGCTGAAATATACTTCAGATTTTGCAAAAAATCAATAGTCGTCAAGTTGGTTTTTTCGATGTATAAAACTCCGAAAATGATTTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTGACAAAAGCAGTACCAC</pcr_primer_p1>
		<pcr_primer_p2>GTTTACAAATAACACCCAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAATTGACAAAAGCAGTACCACGATAATCAAATCCAGGTTTTTGGCGAATTTGTACGGTGGACGAGTATTTGCTTCTTTTATGAGAGTGTCTAAAAGTATTTTAAAAAGACTGTTAGACTTTCAAAGAACAATCTTACAACAACTTTTCCCATCGAAGCTTGGTCTTTCCCAACCGTCTTGACCAAGTTCGTTTTCAAAAAATGAGCAATACTTTGGGTCCAAAATGAACTCCTGGGTGTTATTTGTAAAC</canonical_amplicon>
		<polymorphic_amplicon>AAATTGACAAAAGCAGTACCACGATAATCAAATCCAGGTTTTTGGCGAATTTGTACGGTGGACGAGTATTTGCTTCTTTTATGAGAGTGTCTAAAAGTATTTTAAAAAGACTGTTAGACTTTCAAAGAACAATCTTACAACAACTTTTCCCATCGAAGCTTGGTCTTTCCCAACCGTCTTGACCAAGTTCGTYTTCAAAAAATGAGCAATACTTTGGGTCCAAAATGAACTCCTGGGTGTTATTTGTAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16772</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>380646</contig_pos>
        <strand>+</strand>
        <context>TCAACTCTAT[A/G]GCTATACTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGCAGAAGTGTTGAACGCACTAGTTTTTGCTACGGGTATCAACTCTAT</left_flank>
        <right_flank>GCTATACTTTTTGTTTCGGAACTATTTCCACCAAGTGCAAGAACAGCCAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGACACAACTTCTGTTATGGTCATCTACACAATCCTTCTTCATAAAGAGGCTGGATTTACGGTTCAAACGGTGGGATATATTATTTTTTCTTAACACTTTTCTATGTGTGTGTGTCGGTGTGTGGGGGTGTGTGTGGGTGTGTGTGTCTCCAGGGAGATCTAACTAGTTGTGACTACGGTAATGATACATTATTACAGGCTATGAATATCACTCTCATTATCACAGTCATAACTCTTCCAACCAAATTTTTCGGTACTTTTATGTTGGATGGTCTGGGAAGGGGACCGACGCTTTTCATTGCTGGTGTTATGCAGTATACAAAATCGATTTTGCTCTTATCGACTCAAACTACAATTTATTTTGTTGGCTCAAGTCTACTGACTCAAGGTTTGTGTAGGCTAAAAGTTGCGGAGACTAATAATATTTTCTGGAATTTTCGGATTTAATTGCAGAAGTGTTGAACGCACTAGTTTTTGCTACGGGTATCAACTCTATAGCTATACTTTTTGTTTCGGAACTATTTCCACCAAGTGCAAGAACAGCCATATCCCAGGTGAGCCGTTAGTTCAGGTCAATTGAAAATATCAAAACTTTCGTTAGGCTCTAATGGTCAGTTACATGTTTCTAAATGCTCCAATAATCACCTTGTTTCCAATTTTCGACTCGATTTTCCCACCAATTTTTTTTCCATTTTAATTGTTCAACTAGTTTTTGGAGTTTATCTGTATCGGTAAGAATATTTTGTTTGGGTGCCTCAAGTTTTAAAGAAGATTTTAGGTACATGCCTGAAACTCAAGGGAAACCAGTCTACGAAATTATTGAGTCTATGGATAGAGATATGAAATCCAGGAAAGCGACAATGGTTGATGAGAAAACACCTATTATCAGAGATCGGGTAATCTTTTTTTAACTATCAAAAATGAACAATAAATTATTTTCAGGCTTTGACATTTCAGGGTTCGACCTGCTAACTTTATTATTTTTTGCATTTCACAA</canonical>
            <polymorphic>TTTCGACACAACTTCTGTTATGGTCATCTACACAATCCTTCTTCATAAAGAGGCTGGATTTACGGTTCAAACGGTGGGATATATTATTTTTTCTTAACACTTTTCTATGTGTGTGTGTCGGTGTGTGGGGGTGTGTGTGGGTGTGTGTGTCTCCAGGGAGATCTAACTAGTTGTGACTACGGTAATGATACATTATTACAGGCTATGAATATCACTCTCATTATCACAGTCATAACTCTTCCAACCAAATTTTTCGGTACTTTTATGTTGGATGGTCTGGGAAGGGGACCGACGCTTTTCATTGCTGGTGTTATGCAGTATACAAAATCGATTTTGCTCTTATCGACTCAAACTACAATTTATTTTGTTGGCTCAAGTCTACTGACTCAAGGTTTGTGTAGGCTAAAAGTTGCGGAGACTAATAATATTTTCTGGAATTTTCGGATTTAATTGCAGAAGTGTTGAACGCACTAGTTTTTGCTACGGGTATCAACTCTATRGCTATACTTTTTGTTTCGGAACTATTTCCACCAAGTGCAAGAACAGCCATATCCCAGGTGAGCCGTTAGTTCAGGTCAATTGAAAATATCAAAACTTTCGTTAGGCTCTAATGGTCAGTTACATGTTTCTAAATGCTCCAATAATCACCTTGTTTCCAATTTTCGACTCGATTTTCCCACCAATTTTTTTTCCATTTTAATTGTTCAACTAGTTTTTGGAGTTTATCTGTATCGGTAAGAATATTTTGTTTGGGTGCCTCAAGTTTTAAAGAAGATTTTAGGTACATGCCTGAAACTCAAGGGAAACCAGTCTACGAAATTATTGAGTCTATGGATAGAGATATGAAATCCAGGAAAGCGACAATGGTTGATGAGAAAACACCTATTATCAGAGATCGGGTAATCTTTTTTTAACTATCAAAAATGAACAATAAATTATTTTCAGGCTTTGACATTTCAGGGTTCGACCTGCTAACTTTATTATTTTTTGCATTTCACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>341 169 149 99 54 53 45 43 31 16</canonical_bands>
                <polymorphic_bands>341 169 149 144 54 53 43 31 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTCTACTGACTCAAGGTTTGTG</pcr_primer_p1>
		<pcr_primer_p2>AACATGTAACTGACCATTAGAGC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGTCTACTGACTCAAGGTTTGTGTAGGCTAAAAGTTGCGGAGACTAATAATATTTTCTGGAATTTTCGGATTTAATTGCAGAAGTGTTGAACGCACTAGTTTTTGCTACGGGTATCAACTCTATAGCTATACTTTTTGTTTCGGAACTATTTCCACCAAGTGCAAGAACAGCCATATCCCAGGTGAGCCGTTAGTTCAGGTCAATTGAAAATATCAAAACTTTCGTTAGGCTCTAATGGTCAGTTACATGTT</canonical_amplicon>
		<polymorphic_amplicon>AGTCTACTGACTCAAGGTTTGTGTAGGCTAAAAGTTGCGGAGACTAATAATATTTTCTGGAATTTTCGGATTTAATTGCAGAAGTGTTGAACGCACTAGTTTTTGCTACGGGTATCAACTCTATRGCTATACTTTTTGTTTCGGAACTATTTCCACCAAGTGCAAGAACAGCCATATCCCAGGTGAGCCGTTAGTTCAGGTCAATTGAAAATATCAAAACTTTCGTTAGGCTCTAATGGTCAGTTACATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16773</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>380728</contig_pos>
        <strand>+</strand>
        <context>CAGGTCAATT[A/G]AAAATATCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAGTGCAAGAACAGCCATATCCCAGGTGAGCCGTTAGTTCAGGTCAATT</left_flank>
        <right_flank>AAAATATCAAAACTTTCGTTAGGCTCTAATGGTCAGTTACATGTTTCTAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTATTTTTTCTTAACACTTTTCTATGTGTGTGTGTCGGTGTGTGGGGGTGTGTGTGGGTGTGTGTGTCTCCAGGGAGATCTAACTAGTTGTGACTACGGTAATGATACATTATTACAGGCTATGAATATCACTCTCATTATCACAGTCATAACTCTTCCAACCAAATTTTTCGGTACTTTTATGTTGGATGGTCTGGGAAGGGGACCGACGCTTTTCATTGCTGGTGTTATGCAGTATACAAAATCGATTTTGCTCTTATCGACTCAAACTACAATTTATTTTGTTGGCTCAAGTCTACTGACTCAAGGTTTGTGTAGGCTAAAAGTTGCGGAGACTAATAATATTTTCTGGAATTTTCGGATTTAATTGCAGAAGTGTTGAACGCACTAGTTTTTGCTACGGGTATCAACTCTATAGCTATACTTTTTGTTTCGGAACTATTTCCACCAAGTGCAAGAACAGCCATATCCCAGGTGAGCCGTTAGTTCAGGTCAATTGAAAATATCAAAACTTTCGTTAGGCTCTAATGGTCAGTTACATGTTTCTAAATGCTCCAATAATCACCTTGTTTCCAATTTTCGACTCGATTTTCCCACCAATTTTTTTTCCATTTTAATTGTTCAACTAGTTTTTGGAGTTTATCTGTATCGGTAAGAATATTTTGTTTGGGTGCCTCAAGTTTTAAAGAAGATTTTAGGTACATGCCTGAAACTCAAGGGAAACCAGTCTACGAAATTATTGAGTCTATGGATAGAGATATGAAATCCAGGAAAGCGACAATGGTTGATGAGAAAACACCTATTATCAGAGATCGGGTAATCTTTTTTTAACTATCAAAAATGAACAATAAATTATTTTCAGGCTTTGACATTTCAGGGTTCGACCTGCTAACTTTATTATTTTTTGCATTTCACAATAAAAATTTTGAACACAAAGTTCAATTCATGACACTACATATAAAATATTTTGCACGAATGTTCATTTTGCAGATGGTCAAA</canonical>
            <polymorphic>ATTATTTTTTCTTAACACTTTTCTATGTGTGTGTGTCGGTGTGTGGGGGTGTGTGTGGGTGTGTGTGTCTCCAGGGAGATCTAACTAGTTGTGACTACGGTAATGATACATTATTACAGGCTATGAATATCACTCTCATTATCACAGTCATAACTCTTCCAACCAAATTTTTCGGTACTTTTATGTTGGATGGTCTGGGAAGGGGACCGACGCTTTTCATTGCTGGTGTTATGCAGTATACAAAATCGATTTTGCTCTTATCGACTCAAACTACAATTTATTTTGTTGGCTCAAGTCTACTGACTCAAGGTTTGTGTAGGCTAAAAGTTGCGGAGACTAATAATATTTTCTGGAATTTTCGGATTTAATTGCAGAAGTGTTGAACGCACTAGTTTTTGCTACGGGTATCAACTCTATAGCTATACTTTTTGTTTCGGAACTATTTCCACCAAGTGCAAGAACAGCCATATCCCAGGTGAGCCGTTAGTTCAGGTCAATTRAAAATATCAAAACTTTCGTTAGGCTCTAATGGTCAGTTACATGTTTCTAAATGCTCCAATAATCACCTTGTTTCCAATTTTCGACTCGATTTTCCCACCAATTTTTTTTCCATTTTAATTGTTCAACTAGTTTTTGGAGTTTATCTGTATCGGTAAGAATATTTTGTTTGGGTGCCTCAAGTTTTAAAGAAGATTTTAGGTACATGCCTGAAACTCAAGGGAAACCAGTCTACGAAATTATTGAGTCTATGGATAGAGATATGAAATCCAGGAAAGCGACAATGGTTGATGAGAAAACACCTATTATCAGAGATCGGGTAATCTTTTTTTAACTATCAAAAATGAACAATAAATTATTTTCAGGCTTTGACATTTCAGGGTTCGACCTGCTAACTTTATTATTTTTTGCATTTCACAATAAAAATTTTGAACACAAAGTTCAATTCATGACACTACATATAAAATATTTTGCACGAATGTTCATTTTGCAGATGGTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAAAAGTTGCGGAGACTAATAA</pcr_primer_p1>
		<pcr_primer_p2>TGATTATTGGAGCATTTAGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTAAAAGTTGCGGAGACTAATAATATTTTCTGGAATTTTCGGATTTAATTGCAGAAGTGTTGAACGCACTAGTTTTTGCTACGGGTATCAACTCTATAGCTATACTTTTTGTTTCGGAACTATTTCCACCAAGTGCAAGAACAGCCATATCCCAGGTGAGCCGTTAGTTCAGGTCAATTGAAAATATCAAAACTTTCGTTAGGCTCTAATGGTCAGTTACATGTTTCTAAATGCTCCAATAATCA</canonical_amplicon>
		<polymorphic_amplicon>CTAAAAGTTGCGGAGACTAATAATATTTTCTGGAATTTTCGGATTTAATTGCAGAAGTGTTGAACGCACTAGTTTTTGCTACGGGTATCAACTCTATAGCTATACTTTTTGTTTCGGAACTATTTCCACCAAGTGCAAGAACAGCCATATCCCAGGTGAGCCGTTAGTTCAGGTCAATTRAAAATATCAAAACTTTCGTTAGGCTCTAATGGTCAGTTACATGTTTCTAAATGCTCCAATAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16774</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>380746</contig_pos>
        <strand>+</strand>
        <context>CAAAACTTTC[G/T]TTAGGCTCTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATCCCAGGTGAGCCGTTAGTTCAGGTCAATTGAAAATATCAAAACTTTC</left_flank>
        <right_flank>TTAGGCTCTAATGGTCAGTTACATGTTTCTAAATGCTCCAATAATCACCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCTATGTGTGTGTGTCGGTGTGTGGGGGTGTGTGTGGGTGTGTGTGTCTCCAGGGAGATCTAACTAGTTGTGACTACGGTAATGATACATTATTACAGGCTATGAATATCACTCTCATTATCACAGTCATAACTCTTCCAACCAAATTTTTCGGTACTTTTATGTTGGATGGTCTGGGAAGGGGACCGACGCTTTTCATTGCTGGTGTTATGCAGTATACAAAATCGATTTTGCTCTTATCGACTCAAACTACAATTTATTTTGTTGGCTCAAGTCTACTGACTCAAGGTTTGTGTAGGCTAAAAGTTGCGGAGACTAATAATATTTTCTGGAATTTTCGGATTTAATTGCAGAAGTGTTGAACGCACTAGTTTTTGCTACGGGTATCAACTCTATAGCTATACTTTTTGTTTCGGAACTATTTCCACCAAGTGCAAGAACAGCCATATCCCAGGTGAGCCGTTAGTTCAGGTCAATTGAAAATATCAAAACTTTCGTTAGGCTCTAATGGTCAGTTACATGTTTCTAAATGCTCCAATAATCACCTTGTTTCCAATTTTCGACTCGATTTTCCCACCAATTTTTTTTCCATTTTAATTGTTCAACTAGTTTTTGGAGTTTATCTGTATCGGTAAGAATATTTTGTTTGGGTGCCTCAAGTTTTAAAGAAGATTTTAGGTACATGCCTGAAACTCAAGGGAAACCAGTCTACGAAATTATTGAGTCTATGGATAGAGATATGAAATCCAGGAAAGCGACAATGGTTGATGAGAAAACACCTATTATCAGAGATCGGGTAATCTTTTTTTAACTATCAAAAATGAACAATAAATTATTTTCAGGCTTTGACATTTCAGGGTTCGACCTGCTAACTTTATTATTTTTTGCATTTCACAATAAAAATTTTGAACACAAAGTTCAATTCATGACACTACATATAAAATATTTTGCACGAATGTTCATTTTGCAGATGGTCAAAAAAACTCCTGATAAGAAC</canonical>
            <polymorphic>TTTTCTATGTGTGTGTGTCGGTGTGTGGGGGTGTGTGTGGGTGTGTGTGTCTCCAGGGAGATCTAACTAGTTGTGACTACGGTAATGATACATTATTACAGGCTATGAATATCACTCTCATTATCACAGTCATAACTCTTCCAACCAAATTTTTCGGTACTTTTATGTTGGATGGTCTGGGAAGGGGACCGACGCTTTTCATTGCTGGTGTTATGCAGTATACAAAATCGATTTTGCTCTTATCGACTCAAACTACAATTTATTTTGTTGGCTCAAGTCTACTGACTCAAGGTTTGTGTAGGCTAAAAGTTGCGGAGACTAATAATATTTTCTGGAATTTTCGGATTTAATTGCAGAAGTGTTGAACGCACTAGTTTTTGCTACGGGTATCAACTCTATAGCTATACTTTTTGTTTCGGAACTATTTCCACCAAGTGCAAGAACAGCCATATCCCAGGTGAGCCGTTAGTTCAGGTCAATTGAAAATATCAAAACTTTCKTTAGGCTCTAATGGTCAGTTACATGTTTCTAAATGCTCCAATAATCACCTTGTTTCCAATTTTCGACTCGATTTTCCCACCAATTTTTTTTCCATTTTAATTGTTCAACTAGTTTTTGGAGTTTATCTGTATCGGTAAGAATATTTTGTTTGGGTGCCTCAAGTTTTAAAGAAGATTTTAGGTACATGCCTGAAACTCAAGGGAAACCAGTCTACGAAATTATTGAGTCTATGGATAGAGATATGAAATCCAGGAAAGCGACAATGGTTGATGAGAAAACACCTATTATCAGAGATCGGGTAATCTTTTTTTAACTATCAAAAATGAACAATAAATTATTTTCAGGCTTTGACATTTCAGGGTTCGACCTGCTAACTTTATTATTTTTTGCATTTCACAATAAAAATTTTGAACACAAAGTTCAATTCATGACACTACATATAAAATATTTTGCACGAATGTTCATTTTGCAGATGGTCAAAAAAACTCCTGATAAGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGCTACGGGTATCAACTCTAT</pcr_primer_p1>
		<pcr_primer_p2>AAACTCCAAAAACTAGTTGAACA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTGCTACGGGTATCAACTCTATAGCTATACTTTTTGTTTCGGAACTATTTCCACCAAGTGCAAGAACAGCCATATCCCAGGTGAGCCGTTAGTTCAGGTCAATTGAAAATATCAAAACTTTCGTTAGGCTCTAATGGTCAGTTACATGTTTCTAAATGCTCCAATAATCACCTTGTTTCCAATTTTCGACTCGATTTTCCCACCAATTTTTTTTCCATTTTAATTGTTCAACTAGTTTTTGGAGTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGCTACGGGTATCAACTCTATAGCTATACTTTTTGTTTCGGAACTATTTCCACCAAGTGCAAGAACAGCCATATCCCAGGTGAGCCGTTAGTTCAGGTCAATTGAAAATATCAAAACTTTCKTTAGGCTCTAATGGTCAGTTACATGTTTCTAAATGCTCCAATAATCACCTTGTTTCCAATTTTCGACTCGATTTTCCCACCAATTTTTTTTCCATTTTAATTGTTCAACTAGTTTTTGGAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16775</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>380997</contig_pos>
        <strand>+</strand>
        <context>ATATGAAATC[C/G]AGGAAAGCGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGGAAACCAGTCTACGAAATTATTGAGTCTATGGATAGAGATATGAAATC</left_flank>
        <right_flank>AGGAAAGCGACAATGGTTGATGAGAAAACACCTATTATCAGAGATCGGGT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTACAATTTATTTTGTTGGCTCAAGTCTACTGACTCAAGGTTTGTGTAGGCTAAAAGTTGCGGAGACTAATAATATTTTCTGGAATTTTCGGATTTAATTGCAGAAGTGTTGAACGCACTAGTTTTTGCTACGGGTATCAACTCTATAGCTATACTTTTTGTTTCGGAACTATTTCCACCAAGTGCAAGAACAGCCATATCCCAGGTGAGCCGTTAGTTCAGGTCAATTGAAAATATCAAAACTTTCGTTAGGCTCTAATGGTCAGTTACATGTTTCTAAATGCTCCAATAATCACCTTGTTTCCAATTTTCGACTCGATTTTCCCACCAATTTTTTTTCCATTTTAATTGTTCAACTAGTTTTTGGAGTTTATCTGTATCGGTAAGAATATTTTGTTTGGGTGCCTCAAGTTTTAAAGAAGATTTTAGGTACATGCCTGAAACTCAAGGGAAACCAGTCTACGAAATTATTGAGTCTATGGATAGAGATATGAAATCCAGGAAAGCGACAATGGTTGATGAGAAAACACCTATTATCAGAGATCGGGTAATCTTTTTTTAACTATCAAAAATGAACAATAAATTATTTTCAGGCTTTGACATTTCAGGGTTCGACCTGCTAACTTTATTATTTTTTGCATTTCACAATAAAAATTTTGAACACAAAGTTCAATTCATGACACTACATATAAAATATTTTGCACGAATGTTCATTTTGCAGATGGTCAAAAAAACTCCTGATAAGAACTTTTGCCATATGGAAGTTAGGCATTTTCCAGAACGATTAAACTGTTTTGTTCAAAATGAAATTCTCTGTCCCCAAAAATATTCTATTCCTGATATTCGGTTTTTTAATCCTGGATACTATAAACCAATCGCAAGTTTTAGTATTTTCATCGTTAGCTGAAATTATTCAAGAAATGAATAATCATACATTAACAACACACTTTGGAATTGAGCCAACTGCCACTAGGTTTTGACATCTAAATTTTTGCAATT</canonical>
            <polymorphic>ACTACAATTTATTTTGTTGGCTCAAGTCTACTGACTCAAGGTTTGTGTAGGCTAAAAGTTGCGGAGACTAATAATATTTTCTGGAATTTTCGGATTTAATTGCAGAAGTGTTGAACGCACTAGTTTTTGCTACGGGTATCAACTCTATAGCTATACTTTTTGTTTCGGAACTATTTCCACCAAGTGCAAGAACAGCCATATCCCAGGTGAGCCGTTAGTTCAGGTCAATTGAAAATATCAAAACTTTCGTTAGGCTCTAATGGTCAGTTACATGTTTCTAAATGCTCCAATAATCACCTTGTTTCCAATTTTCGACTCGATTTTCCCACCAATTTTTTTTCCATTTTAATTGTTCAACTAGTTTTTGGAGTTTATCTGTATCGGTAAGAATATTTTGTTTGGGTGCCTCAAGTTTTAAAGAAGATTTTAGGTACATGCCTGAAACTCAAGGGAAACCAGTCTACGAAATTATTGAGTCTATGGATAGAGATATGAAATCSAGGAAAGCGACAATGGTTGATGAGAAAACACCTATTATCAGAGATCGGGTAATCTTTTTTTAACTATCAAAAATGAACAATAAATTATTTTCAGGCTTTGACATTTCAGGGTTCGACCTGCTAACTTTATTATTTTTTGCATTTCACAATAAAAATTTTGAACACAAAGTTCAATTCATGACACTACATATAAAATATTTTGCACGAATGTTCATTTTGCAGATGGTCAAAAAAACTCCTGATAAGAACTTTTGCCATATGGAAGTTAGGCATTTTCCAGAACGATTAAACTGTTTTGTTCAAAATGAAATTCTCTGTCCCCAAAAATATTCTATTCCTGATATTCGGTTTTTTAATCCTGGATACTATAAACCAATCGCAAGTTTTAGTATTTTCATCGTTAGCTGAAATTATTCAAGAAATGAATAATCATACATTAACAACACACTTTGGAATTGAGCCAACTGCCACTAGGTTTTGACATCTAAATTTTTGCAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>359 296 204 141</canonical_bands>
                <polymorphic_bands>655 204 141</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>359 296 204 141</canonical_bands>
                <polymorphic_bands>655 204 141</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>498 359 143</canonical_bands>
                <polymorphic_bands>857 143</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTTGGAGTTTATCTGTATCG</pcr_primer_p1>
		<pcr_primer_p2>AAATGTCAAAGCCTGAAAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTTTTGGAGTTTATCTGTATCGGTAAGAATATTTTGTTTGGGTGCCTCAAGTTTTAAAGAAGATTTTAGGTACATGCCTGAAACTCAAGGGAAACCAGTCTACGAAATTATTGAGTCTATGGATAGAGATATGAAATCCAGGAAAGCGACAATGGTTGATGAGAAAACACCTATTATCAGAGATCGGGTAATCTTTTTTTAACTATCAAAAATGAACAATAAATTATTTTCAGGCTTTGACATTT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTTGGAGTTTATCTGTATCGGTAAGAATATTTTGTTTGGGTGCCTCAAGTTTTAAAGAAGATTTTAGGTACATGCCTGAAACTCAAGGGAAACCAGTCTACGAAATTATTGAGTCTATGGATAGAGATATGAAATCSAGGAAAGCGACAATGGTTGATGAGAAAACACCTATTATCAGAGATCGGGTAATCTTTTTTTAACTATCAAAAATGAACAATAAATTATTTTCAGGCTTTGACATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16776</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>383280</contig_pos>
        <strand></strand>
        <context>ACCTTTCCAG[A/G]RTATGAATAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGTGTGCGGGTTTGATTGTGATTACGGTAATTGTACAAAACCTTTCCAG</left_flank>
        <right_flank>CTATGAATATCACTCTAATCCTGACTTTCATAACGGTCCCGACCAAATTC</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCTACATCTTTTTTCTGTTATCAGTTCTGTTGCTGTTCTATTCTTTTTACTTCGTTTCCCAGAATCGCCGAAATGGCTTGTTCAGCAGAATAGGATTCAAGAAGCGAAGAACTCCATAAAAATTTATCATGGGAGGAACTGCGAAATTGGTTGGTTGCCTTGGGTCGTAAAAATATCAAAGTACCAGTTTAGAGCAAGTTGTGACGTCCATGATAAAAGAGAAGAATTTGACTGATGAGGAAAAACTAACTCTACGCCAAATTTGGGAAAATGAGACTTTGCGGCAGGTAGAGTTAGCTTTTTTGTGGAGATGTATACATGTCAGGATACAGGCATTTAAAATTTTGATGGCTTTGCTGATTTTCAATGTTTTTGACACAACTATGGTTCTATCAGTTTATACAATTCTCCTCCATAAGGAAGCTGGATTCACTGTGCAGATGGTGGGTGTGTGCGGGTTTGATTGTGATTACGGTAATTGTACAAAACCTTTCCAGACTATGAATATCACTCTAATCCTGACTTTCATAACGGTCCCGACCAAATTCTTTGGTACTTTTATGTTGGATGGTTTGGGAAGACGACCGACACTTTTAATTGCTGGTGTTATGGAATATATGAAATCGAGTTTACTCTTGACGACTCAAACTATAATATATTTTGTTGGCTCAAGTCTACTAACTCAAATTTTGTGTAAGCTCAAAATTTCGGTTACAGCAAAAAAATTTTTTTTTTCAGATGTGATTTCCGAATTTCTAAATGCAATCGTTCCTGCAACCGGCGTTCACACTATTCGCATACTCTTTGTGACCGAGCTGTTCCCACCGAGCGCACGGACTGCAGTTGCACAGGTAACAATCAATTTTACATGAAAAACATTTAAAATCCTAAATTTTAGGCGTTAATGTTTGGTGGTATGATTCTGAGCACTCCAATCACCACATTGTTCCCAATAATAGACTCTATATTTCCGCCAATTTATTATTTTCCATTTGTAA</canonical>
            <polymorphic>AACCTACATCTTTTTTCTGTTATCAGTTCTGTTGCTGTTCTATTCTTTTTACTTCGTTTCCCAGAATCGCCGAAATGGCTTGTTCAGCAGAATAGGATTCAAGAAGCGAAGAACTCCATAAAAATTTATCATGGGAGGAACTGCGAAATTGGTTGGTTGCCTTGGGTCGTAAAAATATCAAAGTACCAGTTTAGAGCAAGTTGTGACGTCCATGATAAAAGAGAAGAATTTGACTGATGAGGAAAAACTAACTCTACGCCAAATTTGGGAAAATGAGACTTTGCGGCAGGTAGAGTTAGCTTTTTTGTGGAGATGTATACATGTCAGGATACAGGCATTTAAAATTTTGATGGCTTTGCTGATTTTCAATGTTTTTGACACAACTATGGTTCTATCAGTTTATACAATTCTCCTCCATAAGGAAGCTGGATTCACTGTGCAGATGGTGGGTGTGTGCGGGTTTGATTGTGATTACGGTAATTGTACAAAACCTTTCCAGRCTATGAATATCACTCTAATCCTGACTTTCATAACGGTCCCGACCAAATTCTTTGGTACTTTTATGTTGGATGGTTTGGGAAGACGACCGACACTTTTAATTGCTGGTGTTATGGAATATATGAAATCGAGTTTACTCTTGACGACTCAAACTATAATATATTTTGTTGGCTCAAGTCTACTAACTCAAATTTTGTGTAAGCTCAAAATTTCGGTTACAGCAAAAAAATTTTTTTTTTCAGATGTGATTTCCGAATTTCTAAATGCAATCGTTCCTGCAACCGGCGTTCACACTATTCGCATACTCTTTGTGACCGAGCTGTTCCCACCGAGCGCACGGACTGCAGTTGCACAGGTAACAATCAATTTTACATGAAAAACATTTAAAATCCTAAATTTTAGGCGTTAATGTTTGGTGGTATGATTCTGAGCACTCCAATCACCACATTGTTCCCAATAATAGACTCTATATTTCCGCCAATTTATTATTTTCCATTTGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>363 225 171 100 99 24 18</canonical_bands>
                <polymorphic_bands>363 225 195 100 99 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCAATGTTTTTGACACAAC</pcr_primer_p1>
		<pcr_primer_p2>TAACACCAGCAATTAAAAGTGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCAATGTTTTTGACACAACTATGGTTCTATCAGTTTATACAATTCTCCTCCATAAGGAAGCTGGATTCACTGTGCAGATGGTGGGTGTGTGCGGGTTTGATTGTGATTACGGTAATTGTACAAAACCTTTCCAGACTATGAATATCACTCTAATCCTGACTTTCATAACGGTCCCGACCAAATTCTTTGGTACTTTTATGTTGGATGGTTTGGGAAGACGACCGACACTTTTAATTGCTGGTGTTA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCAATGTTTTTGACACAACTATGGTTCTATCAGTTTATACAATTCTCCTCCATAAGGAAGCTGGATTCACTGTGCAGATGGTGGGTGTGTGCGGGTTTGATTGTGATTACGGTAATTGTACAAAACCTTTCCAGRCTATGAATATCACTCTAATCCTGACTTTCATAACGGTCCCGACCAAATTCTTTGGTACTTTTATGTTGGATGGTTTGGGAAGACGACCGACACTTTTAATTGCTGGTGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16777</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>383261</contig_pos>
        <strand>+</strand>
        <context>ATTACGGTAR[C/T]TGTACAAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCACTGTGCAGATGGTGGGTGTGTGCGGGTTTGATTGTGATTACGGTAA</left_flank>
        <right_flank>TGTACAAAACCTTTCCAGACTATGAATATCACTCTAATCCTGACTTTCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATAATGTGATAGGTACAAAACCTACATCTTTTTTCTGTTATCAGTTCTGTTGCTGTTCTATTCTTTTTACTTCGTTTCCCAGAATCGCCGAAATGGCTTGTTCAGCAGAATAGGATTCAAGAAGCGAAGAACTCCATAAAAATTTATCATGGGAGGAACTGCGAAATTGGTTGGTTGCCTTGGGTCGTAAAAATATCAAAGTACCAGTTTAGAGCAAGTTGTGACGTCCATGATAAAAGAGAAGAATTTGACTGATGAGGAAAAACTAACTCTACGCCAAATTTGGGAAAATGAGACTTTGCGGCAGGTAGAGTTAGCTTTTTTGTGGAGATGTATACATGTCAGGATACAGGCATTTAAAATTTTGATGGCTTTGCTGATTTTCAATGTTTTTGACACAACTATGGTTCTATCAGTTTATACAATTCTCCTCCATAAGGAAGCTGGATTCACTGTGCAGATGGTGGGTGTGTGCGGGTTTGATTGTGATTACGGTAATTGTACAAAACCTTTCCAGACTATGAATATCACTCTAATCCTGACTTTCATAACGGTCCCGACCAAATTCTTTGGTACTTTTATGTTGGATGGTTTGGGAAGACGACCGACACTTTTAATTGCTGGTGTTATGGAATATATGAAATCGAGTTTACTCTTGACGACTCAAACTATAATATATTTTGTTGGCTCAAGTCTACTAACTCAAATTTTGTGTAAGCTCAAAATTTCGGTTACAGCAAAAAAATTTTTTTTTTCAGATGTGATTTCCGAATTTCTAAATGCAATCGTTCCTGCAACCGGCGTTCACACTATTCGCATACTCTTTGTGACCGAGCTGTTCCCACCGAGCGCACGGACTGCAGTTGCACAGGTAACAATCAATTTTACATGAAAAACATTTAAAATCCTAAATTTTAGGCGTTAATGTTTGGTGGTATGATTCTGAGCACTCCAATCACCACATTGTTCCCAATAATAGACTCTATATTTCCGCCAATT</canonical>
            <polymorphic>GATAATGTGATAGGTACAAAACCTACATCTTTTTTCTGTTATCAGTTCTGTTGCTGTTCTATTCTTTTTACTTCGTTTCCCAGAATCGCCGAAATGGCTTGTTCAGCAGAATAGGATTCAAGAAGCGAAGAACTCCATAAAAATTTATCATGGGAGGAACTGCGAAATTGGTTGGTTGCCTTGGGTCGTAAAAATATCAAAGTACCAGTTTAGAGCAAGTTGTGACGTCCATGATAAAAGAGAAGAATTTGACTGATGAGGAAAAACTAACTCTACGCCAAATTTGGGAAAATGAGACTTTGCGGCAGGTAGAGTTAGCTTTTTTGTGGAGATGTATACATGTCAGGATACAGGCATTTAAAATTTTGATGGCTTTGCTGATTTTCAATGTTTTTGACACAACTATGGTTCTATCAGTTTATACAATTCTCCTCCATAAGGAAGCTGGATTCACTGTGCAGATGGTGGGTGTGTGCGGGTTTGATTGTGATTACGGTAAYTGTACAAAACCTTTCCAGACTATGAATATCACTCTAATCCTGACTTTCATAACGGTCCCGACCAAATTCTTTGGTACTTTTATGTTGGATGGTTTGGGAAGACGACCGACACTTTTAATTGCTGGTGTTATGGAATATATGAAATCGAGTTTACTCTTGACGACTCAAACTATAATATATTTTGTTGGCTCAAGTCTACTAACTCAAATTTTGTGTAAGCTCAAAATTTCGGTTACAGCAAAAAAATTTTTTTTTTCAGATGTGATTTCCGAATTTCTAAATGCAATCGTTCCTGCAACCGGCGTTCACACTATTCGCATACTCTTTGTGACCGAGCTGTTCCCACCGAGCGCACGGACTGCAGTTGCACAGGTAACAATCAATTTTACATGAAAAACATTTAAAATCCTAAATTTTAGGCGTTAATGTTTGGTGGTATGATTCTGAGCACTCCAATCACCACATTGTTCCCAATAATAGACTCTATATTTCCGCCAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>141 110 90 85 81 80 73 67 63 52 35 30 27 24 20 18 4</canonical_bands>
                <polymorphic_bands>141 140 110 90 85 81 80 63 52 35 30 27 24 20 18 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCAATGTTTTTGACACAAC</pcr_primer_p1>
		<pcr_primer_p2>TAACACCAGCAATTAAAAGTGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCAATGTTTTTGACACAACTATGGTTCTATCAGTTTATACAATTCTCCTCCATAAGGAAGCTGGATTCACTGTGCAGATGGTGGGTGTGTGCGGGTTTGATTGTGATTACGGTAATTGTACAAAACCTTTCCAGACTATGAATATCACTCTAATCCTGACTTTCATAACGGTCCCGACCAAATTCTTTGGTACTTTTATGTTGGATGGTTTGGGAAGACGACCGACACTTTTAATTGCTGGTGTTA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCAATGTTTTTGACACAACTATGGTTCTATCAGTTTATACAATTCTCCTCCATAAGGAAGCTGGATTCACTGTGCAGATGGTGGGTGTGTGCGGGTTTGATTGTGATTACGGTAAYTGTACAAAACCTTTCCAGACTATGAATATCACTCTAATCCTGACTTTCATAACGGTCCCGACCAAATTCTTTGGTACTTTTATGTTGGATGGTTTGGGAAGACGACCGACACTTTTAATTGCTGGTGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16778</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>383260</contig_pos>
        <strand>+</strand>
        <context>GATTACGGTA[A/G]YTGTACAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCACTGTGCAGATGGTGGGTGTGTGCGGGTTTGATTGTGATTACGGTA</left_flank>
        <right_flank>TTGTACAAAACCTTTCCAGACTATGAATATCACTCTAATCCTGACTTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATAATGTGATAGGTACAAAACCTACATCTTTTTTCTGTTATCAGTTCTGTTGCTGTTCTATTCTTTTTACTTCGTTTCCCAGAATCGCCGAAATGGCTTGTTCAGCAGAATAGGATTCAAGAAGCGAAGAACTCCATAAAAATTTATCATGGGAGGAACTGCGAAATTGGTTGGTTGCCTTGGGTCGTAAAAATATCAAAGTACCAGTTTAGAGCAAGTTGTGACGTCCATGATAAAAGAGAAGAATTTGACTGATGAGGAAAAACTAACTCTACGCCAAATTTGGGAAAATGAGACTTTGCGGCAGGTAGAGTTAGCTTTTTTGTGGAGATGTATACATGTCAGGATACAGGCATTTAAAATTTTGATGGCTTTGCTGATTTTCAATGTTTTTGACACAACTATGGTTCTATCAGTTTATACAATTCTCCTCCATAAGGAAGCTGGATTCACTGTGCAGATGGTGGGTGTGTGCGGGTTTGATTGTGATTACGGTAATTGTACAAAACCTTTCCAGACTATGAATATCACTCTAATCCTGACTTTCATAACGGTCCCGACCAAATTCTTTGGTACTTTTATGTTGGATGGTTTGGGAAGACGACCGACACTTTTAATTGCTGGTGTTATGGAATATATGAAATCGAGTTTACTCTTGACGACTCAAACTATAATATATTTTGTTGGCTCAAGTCTACTAACTCAAATTTTGTGTAAGCTCAAAATTTCGGTTACAGCAAAAAAATTTTTTTTTTCAGATGTGATTTCCGAATTTCTAAATGCAATCGTTCCTGCAACCGGCGTTCACACTATTCGCATACTCTTTGTGACCGAGCTGTTCCCACCGAGCGCACGGACTGCAGTTGCACAGGTAACAATCAATTTTACATGAAAAACATTTAAAATCCTAAATTTTAGGCGTTAATGTTTGGTGGTATGATTCTGAGCACTCCAATCACCACATTGTTCCCAATAATAGACTCTATATTTCCGCCAAT</canonical>
            <polymorphic>TGATAATGTGATAGGTACAAAACCTACATCTTTTTTCTGTTATCAGTTCTGTTGCTGTTCTATTCTTTTTACTTCGTTTCCCAGAATCGCCGAAATGGCTTGTTCAGCAGAATAGGATTCAAGAAGCGAAGAACTCCATAAAAATTTATCATGGGAGGAACTGCGAAATTGGTTGGTTGCCTTGGGTCGTAAAAATATCAAAGTACCAGTTTAGAGCAAGTTGTGACGTCCATGATAAAAGAGAAGAATTTGACTGATGAGGAAAAACTAACTCTACGCCAAATTTGGGAAAATGAGACTTTGCGGCAGGTAGAGTTAGCTTTTTTGTGGAGATGTATACATGTCAGGATACAGGCATTTAAAATTTTGATGGCTTTGCTGATTTTCAATGTTTTTGACACAACTATGGTTCTATCAGTTTATACAATTCTCCTCCATAAGGAAGCTGGATTCACTGTGCAGATGGTGGGTGTGTGCGGGTTTGATTGTGATTACGGTARTTGTACAAAACCTTTCCAGACTATGAATATCACTCTAATCCTGACTTTCATAACGGTCCCGACCAAATTCTTTGGTACTTTTATGTTGGATGGTTTGGGAAGACGACCGACACTTTTAATTGCTGGTGTTATGGAATATATGAAATCGAGTTTACTCTTGACGACTCAAACTATAATATATTTTGTTGGCTCAAGTCTACTAACTCAAATTTTGTGTAAGCTCAAAATTTCGGTTACAGCAAAAAAATTTTTTTTTTCAGATGTGATTTCCGAATTTCTAAATGCAATCGTTCCTGCAACCGGCGTTCACACTATTCGCATACTCTTTGTGACCGAGCTGTTCCCACCGAGCGCACGGACTGCAGTTGCACAGGTAACAATCAATTTTACATGAAAAACATTTAAAATCCTAAATTTTAGGCGTTAATGTTTGGTGGTATGATTCTGAGCACTCCAATCACCACATTGTTCCCAATAATAGACTCTATATTTCCGCCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>142 110 90 88 81 80 73 67 63 52 35 30 27 24 20 18</canonical_bands>
                <polymorphic_bands>142 140 110 90 88 81 80 63 52 35 30 27 24 20 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCAATGTTTTTGACACAAC</pcr_primer_p1>
		<pcr_primer_p2>TAACACCAGCAATTAAAAGTGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCAATGTTTTTGACACAACTATGGTTCTATCAGTTTATACAATTCTCCTCCATAAGGAAGCTGGATTCACTGTGCAGATGGTGGGTGTGTGCGGGTTTGATTGTGATTACGGTAATTGTACAAAACCTTTCCAGACTATGAATATCACTCTAATCCTGACTTTCATAACGGTCCCGACCAAATTCTTTGGTACTTTTATGTTGGATGGTTTGGGAAGACGACCGACACTTTTAATTGCTGGTGTTA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCAATGTTTTTGACACAACTATGGTTCTATCAGTTTATACAATTCTCCTCCATAAGGAAGCTGGATTCACTGTGCAGATGGTGGGTGTGTGCGGGTTTGATTGTGATTACGGTARTTGTACAAAACCTTTCCAGACTATGAATATCACTCTAATCCTGACTTTCATAACGGTCCCGACCAAATTCTTTGGTACTTTTATGTTGGATGGTTTGGGAAGACGACCGACACTTTTAATTGCTGGTGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16779</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>383180</contig_pos>
        <strand>+</strand>
        <context>TTCTATCAGT[C/T]TATACAATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGGCTTTGCTGATTTTCAATGTTTTTGACACAACTATGGTTCTATCAGT</left_flank>
        <right_flank>TATACAATTCTCCTCCATAAGGAAGCTGGATTCACTGTGCAGATGGTGGG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATGTTCACTGCAGCGTCTCCAAGTTTACTCGGAACAACATCTTCCTGGTTCATTTTCCCGCTCGTCACAATGATAAGGTGATAATGTGATAGGTACAAAACCTACATCTTTTTTCTGTTATCAGTTCTGTTGCTGTTCTATTCTTTTTACTTCGTTTCCCAGAATCGCCGAAATGGCTTGTTCAGCAGAATAGGATTCAAGAAGCGAAGAACTCCATAAAAATTTATCATGGGAGGAACTGCGAAATTGGTTGGTTGCCTTGGGTCGTAAAAATATCAAAGTACCAGTTTAGAGCAAGTTGTGACGTCCATGATAAAAGAGAAGAATTTGACTGATGAGGAAAAACTAACTCTACGCCAAATTTGGGAAAATGAGACTTTGCGGCAGGTAGAGTTAGCTTTTTTGTGGAGATGTATACATGTCAGGATACAGGCATTTAAAATTTTGATGGCTTTGCTGATTTTCAATGTTTTTGACACAACTATGGTTCTATCAGTTTATACAATTCTCCTCCATAAGGAAGCTGGATTCACTGTGCAGATGGTGGGTGTGTGCGGGTTTGATTGTGATTACGGTAATTGTACAAAACCTTTCCAGACTATGAATATCACTCTAATCCTGACTTTCATAACGGTCCCGACCAAATTCTTTGGTACTTTTATGTTGGATGGTTTGGGAAGACGACCGACACTTTTAATTGCTGGTGTTATGGAATATATGAAATCGAGTTTACTCTTGACGACTCAAACTATAATATATTTTGTTGGCTCAAGTCTACTAACTCAAATTTTGTGTAAGCTCAAAATTTCGGTTACAGCAAAAAAATTTTTTTTTTCAGATGTGATTTCCGAATTTCTAAATGCAATCGTTCCTGCAACCGGCGTTCACACTATTCGCATACTCTTTGTGACCGAGCTGTTCCCACCGAGCGCACGGACTGCAGTTGCACAGGTAACAATCAATTTTACATGAAAAACATTTAAAATCCTAAATTTTAG</canonical>
            <polymorphic>TCATGTTCACTGCAGCGTCTCCAAGTTTACTCGGAACAACATCTTCCTGGTTCATTTTCCCGCTCGTCACAATGATAAGGTGATAATGTGATAGGTACAAAACCTACATCTTTTTTCTGTTATCAGTTCTGTTGCTGTTCTATTCTTTTTACTTCGTTTCCCAGAATCGCCGAAATGGCTTGTTCAGCAGAATAGGATTCAAGAAGCGAAGAACTCCATAAAAATTTATCATGGGAGGAACTGCGAAATTGGTTGGTTGCCTTGGGTCGTAAAAATATCAAAGTACCAGTTTAGAGCAAGTTGTGACGTCCATGATAAAAGAGAAGAATTTGACTGATGAGGAAAAACTAACTCTACGCCAAATTTGGGAAAATGAGACTTTGCGGCAGGTAGAGTTAGCTTTTTTGTGGAGATGTATACATGTCAGGATACAGGCATTTAAAATTTTGATGGCTTTGCTGATTTTCAATGTTTTTGACACAACTATGGTTCTATCAGTYTATACAATTCTCCTCCATAAGGAAGCTGGATTCACTGTGCAGATGGTGGGTGTGTGCGGGTTTGATTGTGATTACGGTAATTGTACAAAACCTTTCCAGACTATGAATATCACTCTAATCCTGACTTTCATAACGGTCCCGACCAAATTCTTTGGTACTTTTATGTTGGATGGTTTGGGAAGACGACCGACACTTTTAATTGCTGGTGTTATGGAATATATGAAATCGAGTTTACTCTTGACGACTCAAACTATAATATATTTTGTTGGCTCAAGTCTACTAACTCAAATTTTGTGTAAGCTCAAAATTTCGGTTACAGCAAAAAAATTTTTTTTTTCAGATGTGATTTCCGAATTTCTAAATGCAATCGTTCCTGCAACCGGCGTTCACACTATTCGCATACTCTTTGTGACCGAGCTGTTCCCACCGAGCGCACGGACTGCAGTTGCACAGGTAACAATCAATTTTACATGAAAAACATTTAAAATCCTAAATTTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCAGGTAGAGTTAGCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CGTTATGAAAGTCAGGATTAGAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGCAGGTAGAGTTAGCTTTTTTGTGGAGATGTATACATGTCAGGATACAGGCATTTAAAATTTTGATGGCTTTGCTGATTTTCAATGTTTTTGACACAACTATGGTTCTATCAGTTTATACAATTCTCCTCCATAAGGAAGCTGGATTCACTGTGCAGATGGTGGGTGTGTGCGGGTTTGATTGTGATTACGGTAATTGTACAAAACCTTTCCAGACTATGAATATCACTCTAATCCTGACTTTCATAACG</canonical_amplicon>
		<polymorphic_amplicon>GGCAGGTAGAGTTAGCTTTTTTGTGGAGATGTATACATGTCAGGATACAGGCATTTAAAATTTTGATGGCTTTGCTGATTTTCAATGTTTTTGACACAACTATGGTTCTATCAGTYTATACAATTCTCCTCCATAAGGAAGCTGGATTCACTGTGCAGATGGTGGGTGTGTGCGGGTTTGATTGTGATTACGGTAATTGTACAAAACCTTTCCAGACTATGAATATCACTCTAATCCTGACTTTCATAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16780</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>383120</contig_pos>
        <strand>+</strand>
        <context>TACAGGCATT[A/T]AAAATTTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTAGAGTTAGCTTTTTTGTGGAGATGTATACATGTCAGGATACAGGCATT</left_flank>
        <right_flank>AAAATTTTGATGGCTTTGCTGATTTTCAATGTTTTTGACACAACTATGGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCGATTTCCAGGATTCGCTGGAACGTTTCTCGTGTTCGATTATGTTTTAGCAAAACTGTTCATGTTCACTGCAGCGTCTCCAAGTTTACTCGGAACAACATCTTCCTGGTTCATTTTCCCGCTCGTCACAATGATAAGGTGATAATGTGATAGGTACAAAACCTACATCTTTTTTCTGTTATCAGTTCTGTTGCTGTTCTATTCTTTTTACTTCGTTTCCCAGAATCGCCGAAATGGCTTGTTCAGCAGAATAGGATTCAAGAAGCGAAGAACTCCATAAAAATTTATCATGGGAGGAACTGCGAAATTGGTTGGTTGCCTTGGGTCGTAAAAATATCAAAGTACCAGTTTAGAGCAAGTTGTGACGTCCATGATAAAAGAGAAGAATTTGACTGATGAGGAAAAACTAACTCTACGCCAAATTTGGGAAAATGAGACTTTGCGGCAGGTAGAGTTAGCTTTTTTGTGGAGATGTATACATGTCAGGATACAGGCATTTAAAATTTTGATGGCTTTGCTGATTTTCAATGTTTTTGACACAACTATGGTTCTATCAGTTTATACAATTCTCCTCCATAAGGAAGCTGGATTCACTGTGCAGATGGTGGGTGTGTGCGGGTTTGATTGTGATTACGGTAATTGTACAAAACCTTTCCAGACTATGAATATCACTCTAATCCTGACTTTCATAACGGTCCCGACCAAATTCTTTGGTACTTTTATGTTGGATGGTTTGGGAAGACGACCGACACTTTTAATTGCTGGTGTTATGGAATATATGAAATCGAGTTTACTCTTGACGACTCAAACTATAATATATTTTGTTGGCTCAAGTCTACTAACTCAAATTTTGTGTAAGCTCAAAATTTCGGTTACAGCAAAAAAATTTTTTTTTTCAGATGTGATTTCCGAATTTCTAAATGCAATCGTTCCTGCAACCGGCGTTCACACTATTCGCATACTCTTTGTGACCGAGCTGTTCCCACCGAGCGCACGGAC</canonical>
            <polymorphic>CCCGATTTCCAGGATTCGCTGGAACGTTTCTCGTGTTCGATTATGTTTTAGCAAAACTGTTCATGTTCACTGCAGCGTCTCCAAGTTTACTCGGAACAACATCTTCCTGGTTCATTTTCCCGCTCGTCACAATGATAAGGTGATAATGTGATAGGTACAAAACCTACATCTTTTTTCTGTTATCAGTTCTGTTGCTGTTCTATTCTTTTTACTTCGTTTCCCAGAATCGCCGAAATGGCTTGTTCAGCAGAATAGGATTCAAGAAGCGAAGAACTCCATAAAAATTTATCATGGGAGGAACTGCGAAATTGGTTGGTTGCCTTGGGTCGTAAAAATATCAAAGTACCAGTTTAGAGCAAGTTGTGACGTCCATGATAAAAGAGAAGAATTTGACTGATGAGGAAAAACTAACTCTACGCCAAATTTGGGAAAATGAGACTTTGCGGCAGGTAGAGTTAGCTTTTTTGTGGAGATGTATACATGTCAGGATACAGGCATTWAAAATTTTGATGGCTTTGCTGATTTTCAATGTTTTTGACACAACTATGGTTCTATCAGTTTATACAATTCTCCTCCATAAGGAAGCTGGATTCACTGTGCAGATGGTGGGTGTGTGCGGGTTTGATTGTGATTACGGTAATTGTACAAAACCTTTCCAGACTATGAATATCACTCTAATCCTGACTTTCATAACGGTCCCGACCAAATTCTTTGGTACTTTTATGTTGGATGGTTTGGGAAGACGACCGACACTTTTAATTGCTGGTGTTATGGAATATATGAAATCGAGTTTACTCTTGACGACTCAAACTATAATATATTTTGTTGGCTCAAGTCTACTAACTCAAATTTTGTGTAAGCTCAAAATTTCGGTTACAGCAAAAAAATTTTTTTTTTCAGATGTGATTTCCGAATTTCTAAATGCAATCGTTCCTGCAACCGGCGTTCACACTATTCGCATACTCTTTGTGACCGAGCTGTTCCCACCGAGCGCACGGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>499 257 244</canonical_bands>
                <polymorphic_bands>756 244</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAGTACCAGTTTAGAGCAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTCCTTATGGAGGAGAATTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAAAGTACCAGTTTAGAGCAAGTTGTGACGTCCATGATAAAAGAGAAGAATTTGACTGATGAGGAAAAACTAACTCTACGCCAAATTTGGGAAAATGAGACTTTGCGGCAGGTAGAGTTAGCTTTTTTGTGGAGATGTATACATGTCAGGATACAGGCATTTAAAATTTTGATGGCTTTGCTGATTTTCAATGTTTTTGACACAACTATGGTTCTATCAGTTTATACAATTCTCCTCCATAAGGAA</canonical_amplicon>
		<polymorphic_amplicon>CAAAGTACCAGTTTAGAGCAAGTTGTGACGTCCATGATAAAAGAGAAGAATTTGACTGATGAGGAAAAACTAACTCTACGCCAAATTTGGGAAAATGAGACTTTGCGGCAGGTAGAGTTAGCTTTTTTGTGGAGATGTATACATGTCAGGATACAGGCATTWAAAATTTTGATGGCTTTGCTGATTTTCAATGTTTTTGACACAACTATGGTTCTATCAGTTTATACAATTCTCCTCCATAAGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16781</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>382918</contig_pos>
        <strand></strand>
        <context>ATCATGGGAG[G/A]RACTGCGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAGAATAGGATTCAAGAAGCGAAGAACTCCATAAAAATTTATCATGGGAG</left_flank>
        <right_flank>AACTGCGAAATTGGTTGGTTGCCTTGGGTCGTAAAAATATCAAAGTACCA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTCAGAATTGCTATAACCCTTCTTGTTGGATCGTGCCAATTTTTAGCAGCAGTTTTCCAAGCTTCAGAAGTTTTTCTTTTGGGACAGATGATTTTAGGATCACATTATTCTATACGCCACTTCACGAGCATTATGTATATTTTGGAGTGTACACCGGACAATTGTAGAGGTATCAAATCACTTTTGAAGCTATAGAAACCCCGATTTCCAGGATTCGCTGGAACGTTTCTCGTGTTCGATTATGTTTTAGCAAAACTGTTCATGTTCACTGCAGCGTCTCCAAGTTTACTCGGAACAACATCTTCCTGGTTCATTTTCCCGCTCGTCACAATGATAAGGTGATAATGTGATAGGTACAAAACCTACATCTTTTTTCTGTTATCAGTTCTGTTGCTGTTCTATTCTTTTTACTTCGTTTCCCAGAATCGCCGAAATGGCTTGTTCAGCAGAATAGGATTCAAGAAGCGAAGAACTCCATAAAAATTTATCATGGGAGGAACTGCGAAATTGGTTGGTTGCCTTGGGTCGTAAAAATATCAAAGTACCAGTTTAGAGCAAGTTGTGACGTCCATGATAAAAGAGAAGAATTTGACTGATGAGGAAAAACTAACTCTACGCCAAATTTGGGAAAATGAGACTTTGCGGCAGGTAGAGTTAGCTTTTTTGTGGAGATGTATACATGTCAGGATACAGGCATTTAAAATTTTGATGGCTTTGCTGATTTTCAATGTTTTTGACACAACTATGGTTCTATCAGTTTATACAATTCTCCTCCATAAGGAAGCTGGATTCACTGTGCAGATGGTGGGTGTGTGCGGGTTTGATTGTGATTACGGTAATTGTACAAAACCTTTCCAGACTATGAATATCACTCTAATCCTGACTTTCATAACGGTCCCGACCAAATTCTTTGGTACTTTTATGTTGGATGGTTTGGGAAGACGACCGACACTTTTAATTGCTGGTGTTATGGAATATATGAAATCGAGTTTACTCT</canonical>
            <polymorphic>ATTTTCAGAATTGCTATAACCCTTCTTGTTGGATCGTGCCAATTTTTAGCAGCAGTTTTCCAAGCTTCAGAAGTTTTTCTTTTGGGACAGATGATTTTAGGATCACATTATTCTATACGCCACTTCACGAGCATTATGTATATTTTGGAGTGTACACCGGACAATTGTAGAGGTATCAAATCACTTTTGAAGCTATAGAAACCCCGATTTCCAGGATTCGCTGGAACGTTTCTCGTGTTCGATTATGTTTTAGCAAAACTGTTCATGTTCACTGCAGCGTCTCCAAGTTTACTCGGAACAACATCTTCCTGGTTCATTTTCCCGCTCGTCACAATGATAAGGTGATAATGTGATAGGTACAAAACCTACATCTTTTTTCTGTTATCAGTTCTGTTGCTGTTCTATTCTTTTTACTTCGTTTCCCAGAATCGCCGAAATGGCTTGTTCAGCAGAATAGGATTCAAGAAGCGAAGAACTCCATAAAAATTTATCATGGGAGRAACTGCGAAATTGGTTGGTTGCCTTGGGTCGTAAAAATATCAAAGTACCAGTTTAGAGCAAGTTGTGACGTCCATGATAAAAGAGAAGAATTTGACTGATGAGGAAAAACTAACTCTACGCCAAATTTGGGAAAATGAGACTTTGCGGCAGGTAGAGTTAGCTTTTTTGTGGAGATGTATACATGTCAGGATACAGGCATTTAAAATTTTGATGGCTTTGCTGATTTTCAATGTTTTTGACACAACTATGGTTCTATCAGTTTATACAATTCTCCTCCATAAGGAAGCTGGATTCACTGTGCAGATGGTGGGTGTGTGCGGGTTTGATTGTGATTACGGTAATTGTACAAAACCTTTCCAGACTATGAATATCACTCTAATCCTGACTTTCATAACGGTCCCGACCAAATTCTTTGGTACTTTTATGTTGGATGGTTTGGGAAGACGACCGACACTTTTAATTGCTGGTGTTATGGAATATATGAAATCGAGTTTACTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTATCAGTTCTGTTGCTGTTCT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTGGCGTAGAGTTAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTATCAGTTCTGTTGCTGTTCTATTCTTTTTACTTCGTTTCCCAGAATCGCCGAAATGGCTTGTTCAGCAGAATAGGATTCAAGAAGCGAAGAACTCCATAAAAATTTATCATGGGAGGAACTGCGAAATTGGTTGGTTGCCTTGGGTCGTAAAAATATCAAAGTACCAGTTTAGAGCAAGTTGTGACGTCCATGATAAAAGAGAAGAATTTGACTGATGAGGAAAAACTAACTCTACGCCAAATTT</canonical_amplicon>
		<polymorphic_amplicon>GTTATCAGTTCTGTTGCTGTTCTATTCTTTTTACTTCGTTTCCCAGAATCGCCGAAATGGCTTGTTCAGCAGAATAGGATTCAAGAAGCGAAGAACTCCATAAAAATTTATCATGGGAGRAACTGCGAAATTGGTTGGTTGCCTTGGGTCGTAAAAATATCAAAGTACCAGTTTAGAGCAAGTTGTGACGTCCATGATAAAAGAGAAGAATTTGACTGATGAGGAAAAACTAACTCTACGCCAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16782</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>398205</contig_pos>
        <strand>+</strand>
        <context>CTACAGAAGA[G/T]ATTTTGAATG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATGCTCTTCCTACGGTCGGTGCCAACATTGCTCAGCCGCCTACAGAAGA</left_flank>
        <right_flank>ATTTTGAATGACCGCCCTATAGGGTTTGTGAAGCCAGATCATGACAATTG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATGAGATTTGACAAAAAAGTTGTCTCTTACAAAAACGAAGCTCTATTTATGTTAAGTCTTCTCTGAAATTTTCATTCGAATCGGAAAATTCTGAACCACTTGTTCGGGGCTCTAAATAACCTAGTTGCCACCTAGCCGCCGCCCAGCCGCCGTACAGCCTGCCGCGGCCTACTTTCCGCCAGTCTTGCTGAAAAGGCCAAAAAATGAGGTCTGTTTCTGTCATGTTTTTTAAACTGTACATGACTGTAAATGCCAAGATATTTAAAAAATAAATACATTTCTAGGCGACAAGAGAAGAAAAGTCAACAGCTGCACTACTGATGGTTTCTCGGCACATGGTCCATTATAATTATTTTTCATTTATACTACCACATTCAAAATGTTCACATTATACTGAATTCGGATATTCACAGTAGACGGCATATTAGTGGTTGTTTTTCCCTCAAACATGCTCTTCCTACGGTCGGTGCCAACATTGCTCAGCCGCCTACAGAAGATATTTTGAATGACCGCCCTATAGGGTTTGTGAAGCCAGATCATGACAATTGTAGATGAGACACCATGTAGGGAGTATATAATAAAGGTAATGTTGTTGGCTGCCTGGTTATAATAATGAAGAGGAACAGCCACACCAAGGTAGAACAATGGGACGCCCATGTTCAGAAGTATCATTAGAATCTGAAGTAAAAATCAAAGTATGGAGTGTTTATACTCATTTGGAAGCTCTCAATCTAACAAATTGGAATTTTTATGAAAAATTTAAGGTACCTGAATGTATAAAGCTCGCAGAAACTTTTTCTGAATTATCACACAGTTGATTGACACTGTTCTCTCCCTTAACGCTTTCGACGCTCCCAGAAATATCAAAACCACAAAGGCCAACGCCTCGGCTACAATCAACACTCCCATAAGTACAACCGAACCAATAACCAGTGAGAAATCAATAGCAACCACATAAATAGGCATTCTTCTGATTCTTTCTGGGAGCTCTGGTAGGT</canonical>
            <polymorphic>AGATGAGATTTGACAAAAAAGTTGTCTCTTACAAAAACGAAGCTCTATTTATGTTAAGTCTTCTCTGAAATTTTCATTCGAATCGGAAAATTCTGAACCACTTGTTCGGGGCTCTAAATAACCTAGTTGCCACCTAGCCGCCGCCCAGCCGCCGTACAGCCTGCCGCGGCCTACTTTCCGCCAGTCTTGCTGAAAAGGCCAAAAAATGAGGTCTGTTTCTGTCATGTTTTTTAAACTGTACATGACTGTAAATGCCAAGATATTTAAAAAATAAATACATTTCTAGGCGACAAGAGAAGAAAAGTCAACAGCTGCACTACTGATGGTTTCTCGGCACATGGTCCATTATAATTATTTTTCATTTATACTACCACATTCAAAATGTTCACATTATACTGAATTCGGATATTCACAGTAGACGGCATATTAGTGGTTGTTTTTCCCTCAAACATGCTCTTCCTACGGTCGGTGCCAACATTGCTCAGCCGCCTACAGAAGAKATTTTGAATGACCGCCCTATAGGGTTTGTGAAGCCAGATCATGACAATTGTAGATGAGACACCATGTAGGGAGTATATAATAAAGGTAATGTTGTTGGCTGCCTGGTTATAATAATGAAGAGGAACAGCCACACCAAGGTAGAACAATGGGACGCCCATGTTCAGAAGTATCATTAGAATCTGAAGTAAAAATCAAAGTATGGAGTGTTTATACTCATTTGGAAGCTCTCAATCTAACAAATTGGAATTTTTATGAAAAATTTAAGGTACCTGAATGTATAAAGCTCGCAGAAACTTTTTCTGAATTATCACACAGTTGATTGACACTGTTCTCTCCCTTAACGCTTTCGACGCTCCCAGAAATATCAAAACCACAAAGGCCAACGCCTCGGCTACAATCAACACTCCCATAAGTACAACCGAACCAATAACCAGTGAGAAATCAATAGCAACCACATAAATAGGCATTCTTCTGATTCTTTCTGGGAGCTCTGGTAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCATTTATACTACCACATTCA</pcr_primer_p1>
		<pcr_primer_p2>AGCCAACAACATTACCTTTATTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCATTTATACTACCACATTCAAAATGTTCACATTATACTGAATTCGGATATTCACAGTAGACGGCATATTAGTGGTTGTTTTTCCCTCAAACATGCTCTTCCTACGGTCGGTGCCAACATTGCTCAGCCGCCTACAGAAGATATTTTGAATGACCGCCCTATAGGGTTTGTGAAGCCAGATCATGACAATTGTAGATGAGACACCATGTAGGGAGTATATAATAAAGGTAATGTTGTTGGCT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCATTTATACTACCACATTCAAAATGTTCACATTATACTGAATTCGGATATTCACAGTAGACGGCATATTAGTGGTTGTTTTTCCCTCAAACATGCTCTTCCTACGGTCGGTGCCAACATTGCTCAGCCGCCTACAGAAGAKATTTTGAATGACCGCCCTATAGGGTTTGTGAAGCCAGATCATGACAATTGTAGATGAGACACCATGTAGGGAGTATATAATAAAGGTAATGTTGTTGGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16783</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>398274</contig_pos>
        <strand>+</strand>
        <context>ACACCATGTA[A/G]GGAGTATATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAGGGTTTGTGAAGCCAGATCATGACAATTGTAGATGAGACACCATGTA</left_flank>
        <right_flank>GGAGTATATAATAAAGGTAATGTTGTTGGCTGCCTGGTTATAATAATGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTCATTCGAATCGGAAAATTCTGAACCACTTGTTCGGGGCTCTAAATAACCTAGTTGCCACCTAGCCGCCGCCCAGCCGCCGTACAGCCTGCCGCGGCCTACTTTCCGCCAGTCTTGCTGAAAAGGCCAAAAAATGAGGTCTGTTTCTGTCATGTTTTTTAAACTGTACATGACTGTAAATGCCAAGATATTTAAAAAATAAATACATTTCTAGGCGACAAGAGAAGAAAAGTCAACAGCTGCACTACTGATGGTTTCTCGGCACATGGTCCATTATAATTATTTTTCATTTATACTACCACATTCAAAATGTTCACATTATACTGAATTCGGATATTCACAGTAGACGGCATATTAGTGGTTGTTTTTCCCTCAAACATGCTCTTCCTACGGTCGGTGCCAACATTGCTCAGCCGCCTACAGAAGATATTTTGAATGACCGCCCTATAGGGTTTGTGAAGCCAGATCATGACAATTGTAGATGAGACACCATGTAGGGAGTATATAATAAAGGTAATGTTGTTGGCTGCCTGGTTATAATAATGAAGAGGAACAGCCACACCAAGGTAGAACAATGGGACGCCCATGTTCAGAAGTATCATTAGAATCTGAAGTAAAAATCAAAGTATGGAGTGTTTATACTCATTTGGAAGCTCTCAATCTAACAAATTGGAATTTTTATGAAAAATTTAAGGTACCTGAATGTATAAAGCTCGCAGAAACTTTTTCTGAATTATCACACAGTTGATTGACACTGTTCTCTCCCTTAACGCTTTCGACGCTCCCAGAAATATCAAAACCACAAAGGCCAACGCCTCGGCTACAATCAACACTCCCATAAGTACAACCGAACCAATAACCAGTGAGAAATCAATAGCAACCACATAAATAGGCATTCTTCTGATTCTTTCTGGGAGCTCTGGTAGGTTTTCATGAAGTTTTTGTAGTCCGGTAGCTTGATCAGGAGCGTTGAGATAGGCGGGAAGGAATATTAAGA</canonical>
            <polymorphic>ATTTTCATTCGAATCGGAAAATTCTGAACCACTTGTTCGGGGCTCTAAATAACCTAGTTGCCACCTAGCCGCCGCCCAGCCGCCGTACAGCCTGCCGCGGCCTACTTTCCGCCAGTCTTGCTGAAAAGGCCAAAAAATGAGGTCTGTTTCTGTCATGTTTTTTAAACTGTACATGACTGTAAATGCCAAGATATTTAAAAAATAAATACATTTCTAGGCGACAAGAGAAGAAAAGTCAACAGCTGCACTACTGATGGTTTCTCGGCACATGGTCCATTATAATTATTTTTCATTTATACTACCACATTCAAAATGTTCACATTATACTGAATTCGGATATTCACAGTAGACGGCATATTAGTGGTTGTTTTTCCCTCAAACATGCTCTTCCTACGGTCGGTGCCAACATTGCTCAGCCGCCTACAGAAGATATTTTGAATGACCGCCCTATAGGGTTTGTGAAGCCAGATCATGACAATTGTAGATGAGACACCATGTARGGAGTATATAATAAAGGTAATGTTGTTGGCTGCCTGGTTATAATAATGAAGAGGAACAGCCACACCAAGGTAGAACAATGGGACGCCCATGTTCAGAAGTATCATTAGAATCTGAAGTAAAAATCAAAGTATGGAGTGTTTATACTCATTTGGAAGCTCTCAATCTAACAAATTGGAATTTTTATGAAAAATTTAAGGTACCTGAATGTATAAAGCTCGCAGAAACTTTTTCTGAATTATCACACAGTTGATTGACACTGTTCTCTCCCTTAACGCTTTCGACGCTCCCAGAAATATCAAAACCACAAAGGCCAACGCCTCGGCTACAATCAACACTCCCATAAGTACAACCGAACCAATAACCAGTGAGAAATCAATAGCAACCACATAAATAGGCATTCTTCTGATTCTTTCTGGGAGCTCTGGTAGGTTTTCATGAAGTTTTTGTAGTCCGGTAGCTTGATCAGGAGCGTTGAGATAGGCGGGAAGGAATATTAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTCGGATATTCACAGTAGAC</pcr_primer_p1>
		<pcr_primer_p2>GTGGCTGTTCCTCTTCATTAT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>GAATTCGGATATTCACAGTAGACGGCATATTAGTGGTTGTTTTTCCCTCAAACATGCTCTTCCTACGGTCGGTGCCAACATTGCTCAGCCGCCTACAGAAGATATTTTGAATGACCGCCCTATAGGGTTTGTGAAGCCAGATCATGACAATTGTAGATGAGACACCATGTAGGGAGTATATAATAAAGGTAATGTTGTTGGCTGCCTGGTTATAATAATGAAGAGGAACAGCCAC</canonical_amplicon>
		<polymorphic_amplicon>GAATTCGGATATTCACAGTAGACGGCATATTAGTGGTTGTTTTTCCCTCAAACATGCTCTTCCTACGGTCGGTGCCAACATTGCTCAGCCGCCTACAGAAGATATTTTGAATGACCGCCCTATAGGGTTTGTGAAGCCAGATCATGACAATTGTAGATGAGACACCATGTARGGAGTATATAATAAAGGTAATGTTGTTGGCTGCCTGGTTATAATAATGAAGAGGAACAGCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16784</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>398348</contig_pos>
        <strand>+</strand>
        <context>ACCAAGGTAG[A/C]ACAATGGGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGTTGGCTGCCTGGTTATAATAATGAAGAGGAACAGCCACACCAAGGTAG</left_flank>
        <right_flank>ACAATGGGACGCCCATGTTCAGAAGTATCATTAGAATCTGAAGTAAAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCAGCCGCCGTACAGCCTGCCGCGGCCTACTTTCCGCCAGTCTTGCTGAAAAGGCCAAAAAATGAGGTCTGTTTCTGTCATGTTTTTTAAACTGTACATGACTGTAAATGCCAAGATATTTAAAAAATAAATACATTTCTAGGCGACAAGAGAAGAAAAGTCAACAGCTGCACTACTGATGGTTTCTCGGCACATGGTCCATTATAATTATTTTTCATTTATACTACCACATTCAAAATGTTCACATTATACTGAATTCGGATATTCACAGTAGACGGCATATTAGTGGTTGTTTTTCCCTCAAACATGCTCTTCCTACGGTCGGTGCCAACATTGCTCAGCCGCCTACAGAAGATATTTTGAATGACCGCCCTATAGGGTTTGTGAAGCCAGATCATGACAATTGTAGATGAGACACCATGTAGGGAGTATATAATAAAGGTAATGTTGTTGGCTGCCTGGTTATAATAATGAAGAGGAACAGCCACACCAAGGTAGAACAATGGGACGCCCATGTTCAGAAGTATCATTAGAATCTGAAGTAAAAATCAAAGTATGGAGTGTTTATACTCATTTGGAAGCTCTCAATCTAACAAATTGGAATTTTTATGAAAAATTTAAGGTACCTGAATGTATAAAGCTCGCAGAAACTTTTTCTGAATTATCACACAGTTGATTGACACTGTTCTCTCCCTTAACGCTTTCGACGCTCCCAGAAATATCAAAACCACAAAGGCCAACGCCTCGGCTACAATCAACACTCCCATAAGTACAACCGAACCAATAACCAGTGAGAAATCAATAGCAACCACATAAATAGGCATTCTTCTGATTCTTTCTGGGAGCTCTGGTAGGTTTTCATGAAGTTTTTGTAGTCCGGTAGCTTGATCAGGAGCGTTGAGATAGGCGGGAAGGAATATTAAGAAGGCAAGGAAGTAGTTGAATAGCATGCATGGGATACGGAAGTGGCGCCAGCAAGAATTTTTACCGAACGATAGG</canonical>
            <polymorphic>CCCAGCCGCCGTACAGCCTGCCGCGGCCTACTTTCCGCCAGTCTTGCTGAAAAGGCCAAAAAATGAGGTCTGTTTCTGTCATGTTTTTTAAACTGTACATGACTGTAAATGCCAAGATATTTAAAAAATAAATACATTTCTAGGCGACAAGAGAAGAAAAGTCAACAGCTGCACTACTGATGGTTTCTCGGCACATGGTCCATTATAATTATTTTTCATTTATACTACCACATTCAAAATGTTCACATTATACTGAATTCGGATATTCACAGTAGACGGCATATTAGTGGTTGTTTTTCCCTCAAACATGCTCTTCCTACGGTCGGTGCCAACATTGCTCAGCCGCCTACAGAAGATATTTTGAATGACCGCCCTATAGGGTTTGTGAAGCCAGATCATGACAATTGTAGATGAGACACCATGTAGGGAGTATATAATAAAGGTAATGTTGTTGGCTGCCTGGTTATAATAATGAAGAGGAACAGCCACACCAAGGTAGMACAATGGGACGCCCATGTTCAGAAGTATCATTAGAATCTGAAGTAAAAATCAAAGTATGGAGTGTTTATACTCATTTGGAAGCTCTCAATCTAACAAATTGGAATTTTTATGAAAAATTTAAGGTACCTGAATGTATAAAGCTCGCAGAAACTTTTTCTGAATTATCACACAGTTGATTGACACTGTTCTCTCCCTTAACGCTTTCGACGCTCCCAGAAATATCAAAACCACAAAGGCCAACGCCTCGGCTACAATCAACACTCCCATAAGTACAACCGAACCAATAACCAGTGAGAAATCAATAGCAACCACATAAATAGGCATTCTTCTGATTCTTTCTGGGAGCTCTGGTAGGTTTTCATGAAGTTTTTGTAGTCCGGTAGCTTGATCAGGAGCGTTGAGATAGGCGGGAAGGAATATTAAGAAGGCAAGGAAGTAGTTGAATAGCATGCATGGGATACGGAAGTGGCGCCAGCAAGAATTTTTACCGAACGATAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAATTGTAGATGAGACACCAT</pcr_primer_p1>
		<pcr_primer_p2>CTGCGAGCTTTATACATTCAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GACAATTGTAGATGAGACACCATGTAGGGAGTATATAATAAAGGTAATGTTGTTGGCTGCCTGGTTATAATAATGAAGAGGAACAGCCACACCAAGGTAGAACAATGGGACGCCCATGTTCAGAAGTATCATTAGAATCTGAAGTAAAAATCAAAGTATGGAGTGTTTATACTCATTTGGAAGCTCTCAATCTAACAAATTGGAATTTTTATGAAAAATTTAAGGTACCTGAATGTATAAAGCTCGCAG</canonical_amplicon>
		<polymorphic_amplicon>GACAATTGTAGATGAGACACCATGTAGGGAGTATATAATAAAGGTAATGTTGTTGGCTGCCTGGTTATAATAATGAAGAGGAACAGCCACACCAAGGTAGMACAATGGGACGCCCATGTTCAGAAGTATCATTAGAATCTGAAGTAAAAATCAAAGTATGGAGTGTTTATACTCATTTGGAAGCTCTCAATCTAACAAATTGGAATTTTTATGAAAAATTTAAGGTACCTGAATGTATAAAGCTCGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16785</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>398545</contig_pos>
        <strand>+</strand>
        <context>TTCTCTCCCT[C/T]AACGCTTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAACTTTTTCTGAATTATCACACAGTTGATTGACACTGTTCTCTCCCT</left_flank>
        <right_flank>AACGCTTTCGACGCTCCCAGAAATATCAAAACCACAAAGGCCAACGCCTC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCCATTATAATTATTTTTCATTTATACTACCACATTCAAAATGTTCACATTATACTGAATTCGGATATTCACAGTAGACGGCATATTAGTGGTTGTTTTTCCCTCAAACATGCTCTTCCTACGGTCGGTGCCAACATTGCTCAGCCGCCTACAGAAGATATTTTGAATGACCGCCCTATAGGGTTTGTGAAGCCAGATCATGACAATTGTAGATGAGACACCATGTAGGGAGTATATAATAAAGGTAATGTTGTTGGCTGCCTGGTTATAATAATGAAGAGGAACAGCCACACCAAGGTAGAACAATGGGACGCCCATGTTCAGAAGTATCATTAGAATCTGAAGTAAAAATCAAAGTATGGAGTGTTTATACTCATTTGGAAGCTCTCAATCTAACAAATTGGAATTTTTATGAAAAATTTAAGGTACCTGAATGTATAAAGCTCGCAGAAACTTTTTCTGAATTATCACACAGTTGATTGACACTGTTCTCTCCCTTAACGCTTTCGACGCTCCCAGAAATATCAAAACCACAAAGGCCAACGCCTCGGCTACAATCAACACTCCCATAAGTACAACCGAACCAATAACCAGTGAGAAATCAATAGCAACCACATAAATAGGCATTCTTCTGATTCTTTCTGGGAGCTCTGGTAGGTTTTCATGAAGTTTTTGTAGTCCGGTAGCTTGATCAGGAGCGTTGAGATAGGCGGGAAGGAATATTAAGAAGGCAAGGAAGTAGTTGAATAGCATGCATGGGATACGGAAGTGGCGCCAGCAAGAATTTTTACCGAACGATAGGTAATATCGGTTTTCGAAGATGGAAACAATGGCGGCACAAACGACTGTAACTTATTTTTTCTTGGTTGGCTATGGAGCAAAATGGGAAGATTCCCTCCGAGATAATTGCGAAAATTTTATTTTTGAAAAGTTGAAACGAATGACTGTAGGTATACGGTATTTACGATAACCTAATTTTTGTAACTCGTCAAAAAATGA</canonical>
            <polymorphic>GTCCATTATAATTATTTTTCATTTATACTACCACATTCAAAATGTTCACATTATACTGAATTCGGATATTCACAGTAGACGGCATATTAGTGGTTGTTTTTCCCTCAAACATGCTCTTCCTACGGTCGGTGCCAACATTGCTCAGCCGCCTACAGAAGATATTTTGAATGACCGCCCTATAGGGTTTGTGAAGCCAGATCATGACAATTGTAGATGAGACACCATGTAGGGAGTATATAATAAAGGTAATGTTGTTGGCTGCCTGGTTATAATAATGAAGAGGAACAGCCACACCAAGGTAGAACAATGGGACGCCCATGTTCAGAAGTATCATTAGAATCTGAAGTAAAAATCAAAGTATGGAGTGTTTATACTCATTTGGAAGCTCTCAATCTAACAAATTGGAATTTTTATGAAAAATTTAAGGTACCTGAATGTATAAAGCTCGCAGAAACTTTTTCTGAATTATCACACAGTTGATTGACACTGTTCTCTCCCTYAACGCTTTCGACGCTCCCAGAAATATCAAAACCACAAAGGCCAACGCCTCGGCTACAATCAACACTCCCATAAGTACAACCGAACCAATAACCAGTGAGAAATCAATAGCAACCACATAAATAGGCATTCTTCTGATTCTTTCTGGGAGCTCTGGTAGGTTTTCATGAAGTTTTTGTAGTCCGGTAGCTTGATCAGGAGCGTTGAGATAGGCGGGAAGGAATATTAAGAAGGCAAGGAAGTAGTTGAATAGCATGCATGGGATACGGAAGTGGCGCCAGCAAGAATTTTTACCGAACGATAGGTAATATCGGTTTTCGAAGATGGAAACAATGGCGGCACAAACGACTGTAACTTATTTTTTCTTGGTTGGCTATGGAGCAAAATGGGAAGATTCCCTCCGAGATAATTGCGAAAATTTTATTTTTGAAAAGTTGAAACGAATGACTGTAGGTATACGGTATTTACGATAACCTAATTTTTGTAACTCGTCAAAAAATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>422 276 225 77</canonical_bands>
                <polymorphic_bands>422 302 276</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGTACCTGAATGTATAAAGCTC</pcr_primer_p1>
		<pcr_primer_p2>AAACTTCATGAAAACCTACCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGGTACCTGAATGTATAAAGCTCGCAGAAACTTTTTCTGAATTATCACACAGTTGATTGACACTGTTCTCTCCCTTAACGCTTTCGACGCTCCCAGAAATATCAAAACCACAAAGGCCAACGCCTCGGCTACAATCAACACTCCCATAAGTACAACCGAACCAATAACCAGTGAGAAATCAATAGCAACCACATAAATAGGCATTCTTCTGATTCTTTCTGGGAGCTCTGGTAGGTTTTCATGAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>AAGGTACCTGAATGTATAAAGCTCGCAGAAACTTTTTCTGAATTATCACACAGTTGATTGACACTGTTCTCTCCCTYAACGCTTTCGACGCTCCCAGAAATATCAAAACCACAAAGGCCAACGCCTCGGCTACAATCAACACTCCCATAAGTACAACCGAACCAATAACCAGTGAGAAATCAATAGCAACCACATAAATAGGCATTCTTCTGATTCTTTCTGGGAGCTCTGGTAGGTTTTCATGAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16788</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>140221</contig_pos>
        <strand>+</strand>
        <context>GATTTCCGGT[C/T]CGGTCCATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGTAGTGAATCAGAATTGCCACCACTCCACATCCAGTTCGATTTCCGGT</left_flank>
        <right_flank>CGGTCCATTCCTGGAAAAGTTTGTAGTTTGTAGTTTGTGGTTTGTAGTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAAATTCAGAATTTAAGAATCGCAGAATTTCAGAATCGCAGAATCGCAGAATTTCAGAATCGCAGAAATTCAGAATCGCAGAATTTCAGAATTTAAGAATCGCAGAATTTCAGAACCGCAGAATTTCAGAATCTGAAAATCGAAGAATCGTAATTCTGCGACATTCTTACAATTAGTTTTTTTTTAACTTCCAGATTCTCAAATATCAAAATTTGTCATTCTTATCAAATTTCCAGAATTTTTTCCCAAGCTCCGCCCACTCACTATGTATCCGTTCCATAGTCCTCCCATTTGACACCAGCTGACACTGCCACAATAATCGCGGGACATCCATAACAGAACAAATAATACAGGAATATTCTGGTTCTGTTCGGTTCGAAAACCTGGATGAGCATCATGTACAACTGGTATCCTTCCAGAAGCATCCAACAGAAAGATGCCAAGAAAAAGTAGTGAATCAGAATTGCCACCACTCCACATCCAGTTCGATTTCCGGTCCGGTCCATTCCTGGAAAAGTTTGTAGTTTGTAGTTTGTGGTTTGTAGTTTGTAGTTTAAAATTTTTAGTTTGTGTATGTACTTTGTAGTTTGTAGTTCATAAAGAGAAACCCGGACAAAAAATATTCGTTACATTTTTTTCAGTGGAACATAGTTAACTTTAGAGCTACAAAAGTGGTACAGCATTTCACGATTTGTCTGAAAATTTCAGCGTACATTAAAGAAAATTAGAGCTTCAATTTTGTAGTTGACAACTTTTTTCTAGCTACAAAAATATTTGAGATAAGCGCCTTTAAAATACCATCCCTTCCTCATATTTATCATCAAGATAGAGGGAGAGGGAGGTGGTATTTTTCAAAAGCACATATCTTGAAAACCAAGAGAGCTACAAAAAAGTTGTCAACTACAAAATTGAAGCTCTATTTTTAATTAATACATTCTGAAATTTTCAGACAAATCGAAAAACCCTGGGCTACTTTCGTAGGACTCCAAATTTAAGAA</canonical>
            <polymorphic>CAGAAATTCAGAATTTAAGAATCGCAGAATTTCAGAATCGCAGAATCGCAGAATTTCAGAATCGCAGAAATTCAGAATCGCAGAATTTCAGAATTTAAGAATCGCAGAATTTCAGAACCGCAGAATTTCAGAATCTGAAAATCGAAGAATCGTAATTCTGCGACATTCTTACAATTAGTTTTTTTTTAACTTCCAGATTCTCAAATATCAAAATTTGTCATTCTTATCAAATTTCCAGAATTTTTTCCCAAGCTCCGCCCACTCACTATGTATCCGTTCCATAGTCCTCCCATTTGACACCAGCTGACACTGCCACAATAATCGCGGGACATCCATAACAGAACAAATAATACAGGAATATTCTGGTTCTGTTCGGTTCGAAAACCTGGATGAGCATCATGTACAACTGGTATCCTTCCAGAAGCATCCAACAGAAAGATGCCAAGAAAAAGTAGTGAATCAGAATTGCCACCACTCCACATCCAGTTCGATTTCCGGTYCGGTCCATTCCTGGAAAAGTTTGTAGTTTGTAGTTTGTGGTTTGTAGTTTGTAGTTTAAAATTTTTAGTTTGTGTATGTACTTTGTAGTTTGTAGTTCATAAAGAGAAACCCGGACAAAAAATATTCGTTACATTTTTTTCAGTGGAACATAGTTAACTTTAGAGCTACAAAAGTGGTACAGCATTTCACGATTTGTCTGAAAATTTCAGCGTACATTAAAGAAAATTAGAGCTTCAATTTTGTAGTTGACAACTTTTTTCTAGCTACAAAAATATTTGAGATAAGCGCCTTTAAAATACCATCCCTTCCTCATATTTATCATCAAGATAGAGGGAGAGGGAGGTGGTATTTTTCAAAAGCACATATCTTGAAAACCAAGAGAGCTACAAAAAAGTTGTCAACTACAAAATTGAAGCTCTATTTTTAATTAATACATTCTGAAATTTTCAGACAAATCGAAAAACCCTGGGCTACTTTCGTAGGACTCCAAATTTAAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>495 389 111 5</canonical_bands>
                <polymorphic_bands>495 389 116</polymorphic_bands>
            </assay>
            <assay>
                <site>CGGWCCG</site>
                <isoschizomers>
                    <enzyme>CpoI</enzyme>
                    <enzyme>CspI</enzyme>
                    <enzyme>Rsr2I</enzyme>
                    <enzyme>RsrII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAGAAAAAGTAGTGAATCAGA</pcr_primer_p1>
		<pcr_primer_p2>GAAATGCTGTACCACTTTTGTAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCAAGAAAAAGTAGTGAATCAGAATTGCCACCACTCCACATCCAGTTCGATTTCCGGTCCGGTCCATTCCTGGAAAAGTTTGTAGTTTGTAGTTTGTGGTTTGTAGTTTGTAGTTTAAAATTTTTAGTTTGTGTATGTACTTTGTAGTTTGTAGTTCATAAAGAGAAACCCGGACAAAAAATATTCGTTACATTTTTTTCAGTGGAACATAGTTAACTTTAGAGCTACAAAAGTGGTACAGCATTTC</canonical_amplicon>
		<polymorphic_amplicon>CCAAGAAAAAGTAGTGAATCAGAATTGCCACCACTCCACATCCAGTTCGATTTCCGGTYCGGTCCATTCCTGGAAAAGTTTGTAGTTTGTAGTTTGTGGTTTGTAGTTTGTAGTTTAAAATTTTTAGTTTGTGTATGTACTTTGTAGTTTGTAGTTCATAAAGAGAAACCCGGACAAAAAATATTCGTTACATTTTTTTCAGTGGAACATAGTTAACTTTAGAGCTACAAAAGTGGTACAGCATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16789</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>140283</contig_pos>
        <strand>+</strand>
        <context>TAGTTTAAAA[G/T]TTTTAGTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGGAAAAGTTTGTAGTTTGTAGTTTGTGGTTTGTAGTTTGTAGTTTAAAA</left_flank>
        <right_flank>TTTTAGTTTGTGTATGTACTTTGTAGTTTGTAGTTCATAAAGAGAAACCC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCAGAAATTCAGAATCGCAGAATTTCAGAATTTAAGAATCGCAGAATTTCAGAACCGCAGAATTTCAGAATCTGAAAATCGAAGAATCGTAATTCTGCGACATTCTTACAATTAGTTTTTTTTTAACTTCCAGATTCTCAAATATCAAAATTTGTCATTCTTATCAAATTTCCAGAATTTTTTCCCAAGCTCCGCCCACTCACTATGTATCCGTTCCATAGTCCTCCCATTTGACACCAGCTGACACTGCCACAATAATCGCGGGACATCCATAACAGAACAAATAATACAGGAATATTCTGGTTCTGTTCGGTTCGAAAACCTGGATGAGCATCATGTACAACTGGTATCCTTCCAGAAGCATCCAACAGAAAGATGCCAAGAAAAAGTAGTGAATCAGAATTGCCACCACTCCACATCCAGTTCGATTTCCGGTCCGGTCCATTCCTGGAAAAGTTTGTAGTTTGTAGTTTGTGGTTTGTAGTTTGTAGTTTAAAATTTTTAGTTTGTGTATGTACTTTGTAGTTTGTAGTTCATAAAGAGAAACCCGGACAAAAAATATTCGTTACATTTTTTTCAGTGGAACATAGTTAACTTTAGAGCTACAAAAGTGGTACAGCATTTCACGATTTGTCTGAAAATTTCAGCGTACATTAAAGAAAATTAGAGCTTCAATTTTGTAGTTGACAACTTTTTTCTAGCTACAAAAATATTTGAGATAAGCGCCTTTAAAATACCATCCCTTCCTCATATTTATCATCAAGATAGAGGGAGAGGGAGGTGGTATTTTTCAAAAGCACATATCTTGAAAACCAAGAGAGCTACAAAAAAGTTGTCAACTACAAAATTGAAGCTCTATTTTTAATTAATACATTCTGAAATTTTCAGACAAATCGAAAAACCCTGGGCTACTTTCGTAGGACTCCAAATTTAAGAATTTCATTGAAAAATGTCAAAATATGACTATTTTGGGTACTGTAGCTTGCAGCCTTACCTATC</canonical>
            <polymorphic>CGCAGAAATTCAGAATCGCAGAATTTCAGAATTTAAGAATCGCAGAATTTCAGAACCGCAGAATTTCAGAATCTGAAAATCGAAGAATCGTAATTCTGCGACATTCTTACAATTAGTTTTTTTTTAACTTCCAGATTCTCAAATATCAAAATTTGTCATTCTTATCAAATTTCCAGAATTTTTTCCCAAGCTCCGCCCACTCACTATGTATCCGTTCCATAGTCCTCCCATTTGACACCAGCTGACACTGCCACAATAATCGCGGGACATCCATAACAGAACAAATAATACAGGAATATTCTGGTTCTGTTCGGTTCGAAAACCTGGATGAGCATCATGTACAACTGGTATCCTTCCAGAAGCATCCAACAGAAAGATGCCAAGAAAAAGTAGTGAATCAGAATTGCCACCACTCCACATCCAGTTCGATTTCCGGTCCGGTCCATTCCTGGAAAAGTTTGTAGTTTGTAGTTTGTGGTTTGTAGTTTGTAGTTTAAAAKTTTTAGTTTGTGTATGTACTTTGTAGTTTGTAGTTCATAAAGAGAAACCCGGACAAAAAATATTCGTTACATTTTTTTCAGTGGAACATAGTTAACTTTAGAGCTACAAAAGTGGTACAGCATTTCACGATTTGTCTGAAAATTTCAGCGTACATTAAAGAAAATTAGAGCTTCAATTTTGTAGTTGACAACTTTTTTCTAGCTACAAAAATATTTGAGATAAGCGCCTTTAAAATACCATCCCTTCCTCATATTTATCATCAAGATAGAGGGAGAGGGAGGTGGTATTTTTCAAAAGCACATATCTTGAAAACCAAGAGAGCTACAAAAAAGTTGTCAACTACAAAATTGAAGCTCTATTTTTAATTAATACATTCTGAAATTTTCAGACAAATCGAAAAACCCTGGGCTACTTTCGTAGGACTCCAAATTTAAGAATTTCATTGAAAAATGTCAAAATATGACTATTTTGGGTACTGTAGCTTGCAGCCTTACCTATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>321 240 143 88 64 48 18 16 16 15 9 8 8 6</canonical_bands>
                <polymorphic_bands>464 240 88 64 48 18 16 16 15 9 8 8 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>225 172 143 96 64 48 39 30 22 19 18 18 16 16 16 15 12 9 8 8 6</canonical_bands>
                <polymorphic_bands>239 225 172 64 48 39 30 22 19 18 18 16 16 16 15 12 9 8 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAGAAAAAGTAGTGAATCAGA</pcr_primer_p1>
		<pcr_primer_p2>GAAATGCTGTACCACTTTTGTAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCAAGAAAAAGTAGTGAATCAGAATTGCCACCACTCCACATCCAGTTCGATTTCCGGTCCGGTCCATTCCTGGAAAAGTTTGTAGTTTGTAGTTTGTGGTTTGTAGTTTGTAGTTTAAAATTTTTAGTTTGTGTATGTACTTTGTAGTTTGTAGTTCATAAAGAGAAACCCGGACAAAAAATATTCGTTACATTTTTTTCAGTGGAACATAGTTAACTTTAGAGCTACAAAAGTGGTACAGCATTTC</canonical_amplicon>
		<polymorphic_amplicon>CCAAGAAAAAGTAGTGAATCAGAATTGCCACCACTCCACATCCAGTTCGATTTCCGGTCCGGTCCATTCCTGGAAAAGTTTGTAGTTTGTAGTTTGTGGTTTGTAGTTTGTAGTTTAAAAKTTTTAGTTTGTGTATGTACTTTGTAGTTTGTAGTTCATAAAGAGAAACCCGGACAAAAAATATTCGTTACATTTTTTTCAGTGGAACATAGTTAACTTTAGAGCTACAAAAGTGGTACAGCATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16790</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>140348</contig_pos>
        <strand>+</strand>
        <context>AAAAAATATT[A/C]GTTACATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGTACTTTGTAGTTTGTAGTTCATAAAGAGAAACCCGGACAAAAAATATT</left_flank>
        <right_flank>GTTACATTTTTTTCAGTGGAACATAGTTAACTTTAGAGCTACAAAAGTGG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGAATCTGAAAATCGAAGAATCGTAATTCTGCGACATTCTTACAATTAGTTTTTTTTTAACTTCCAGATTCTCAAATATCAAAATTTGTCATTCTTATCAAATTTCCAGAATTTTTTCCCAAGCTCCGCCCACTCACTATGTATCCGTTCCATAGTCCTCCCATTTGACACCAGCTGACACTGCCACAATAATCGCGGGACATCCATAACAGAACAAATAATACAGGAATATTCTGGTTCTGTTCGGTTCGAAAACCTGGATGAGCATCATGTACAACTGGTATCCTTCCAGAAGCATCCAACAGAAAGATGCCAAGAAAAAGTAGTGAATCAGAATTGCCACCACTCCACATCCAGTTCGATTTCCGGTCCGGTCCATTCCTGGAAAAGTTTGTAGTTTGTAGTTTGTGGTTTGTAGTTTGTAGTTTAAAATTTTTAGTTTGTGTATGTACTTTGTAGTTTGTAGTTCATAAAGAGAAACCCGGACAAAAAATATTCGTTACATTTTTTTCAGTGGAACATAGTTAACTTTAGAGCTACAAAAGTGGTACAGCATTTCACGATTTGTCTGAAAATTTCAGCGTACATTAAAGAAAATTAGAGCTTCAATTTTGTAGTTGACAACTTTTTTCTAGCTACAAAAATATTTGAGATAAGCGCCTTTAAAATACCATCCCTTCCTCATATTTATCATCAAGATAGAGGGAGAGGGAGGTGGTATTTTTCAAAAGCACATATCTTGAAAACCAAGAGAGCTACAAAAAAGTTGTCAACTACAAAATTGAAGCTCTATTTTTAATTAATACATTCTGAAATTTTCAGACAAATCGAAAAACCCTGGGCTACTTTCGTAGGACTCCAAATTTAAGAATTTCATTGAAAAATGTCAAAATATGACTATTTTGGGTACTGTAGCTTGCAGCCTTACCTATCACAAAAACCAACTCTGCTATCAACAAACAAAGACAGAGATTCCGATGAATTGAATTTCTGACATT</canonical>
            <polymorphic>TCAGAATCTGAAAATCGAAGAATCGTAATTCTGCGACATTCTTACAATTAGTTTTTTTTTAACTTCCAGATTCTCAAATATCAAAATTTGTCATTCTTATCAAATTTCCAGAATTTTTTCCCAAGCTCCGCCCACTCACTATGTATCCGTTCCATAGTCCTCCCATTTGACACCAGCTGACACTGCCACAATAATCGCGGGACATCCATAACAGAACAAATAATACAGGAATATTCTGGTTCTGTTCGGTTCGAAAACCTGGATGAGCATCATGTACAACTGGTATCCTTCCAGAAGCATCCAACAGAAAGATGCCAAGAAAAAGTAGTGAATCAGAATTGCCACCACTCCACATCCAGTTCGATTTCCGGTCCGGTCCATTCCTGGAAAAGTTTGTAGTTTGTAGTTTGTGGTTTGTAGTTTGTAGTTTAAAATTTTTAGTTTGTGTATGTACTTTGTAGTTTGTAGTTCATAAAGAGAAACCCGGACAAAAAATATTMGTTACATTTTTTTCAGTGGAACATAGTTAACTTTAGAGCTACAAAAGTGGTACAGCATTTCACGATTTGTCTGAAAATTTCAGCGTACATTAAAGAAAATTAGAGCTTCAATTTTGTAGTTGACAACTTTTTTCTAGCTACAAAAATATTTGAGATAAGCGCCTTTAAAATACCATCCCTTCCTCATATTTATCATCAAGATAGAGGGAGAGGGAGGTGGTATTTTTCAAAAGCACATATCTTGAAAACCAAGAGAGCTACAAAAAAGTTGTCAACTACAAAATTGAAGCTCTATTTTTAATTAATACATTCTGAAATTTTCAGACAAATCGAAAAACCCTGGGCTACTTTCGTAGGACTCCAAATTTAAGAATTTCATTGAAAAATGTCAAAATATGACTATTTTGGGTACTGTAGCTTGCAGCCTTACCTATCACAAAAACCAACTCTGCTATCAACAAACAAAGACAGAGATTCCGATGAATTGAATTTCTGACATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAGAAAAAGTAGTGAATCAGA</pcr_primer_p1>
		<pcr_primer_p2>GAAATGCTGTACCACTTTTGTAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCAAGAAAAAGTAGTGAATCAGAATTGCCACCACTCCACATCCAGTTCGATTTCCGGTCCGGTCCATTCCTGGAAAAGTTTGTAGTTTGTAGTTTGTGGTTTGTAGTTTGTAGTTTAAAATTTTTAGTTTGTGTATGTACTTTGTAGTTTGTAGTTCATAAAGAGAAACCCGGACAAAAAATATTCGTTACATTTTTTTCAGTGGAACATAGTTAACTTTAGAGCTACAAAAGTGGTACAGCATTTC</canonical_amplicon>
		<polymorphic_amplicon>CCAAGAAAAAGTAGTGAATCAGAATTGCCACCACTCCACATCCAGTTCGATTTCCGGTCCGGTCCATTCCTGGAAAAGTTTGTAGTTTGTAGTTTGTGGTTTGTAGTTTGTAGTTTAAAATTTTTAGTTTGTGTATGTACTTTGTAGTTTGTAGTTCATAAAGAGAAACCCGGACAAAAAATATTMGTTACATTTTTTTCAGTGGAACATAGTTAACTTTAGAGCTACAAAAGTGGTACAGCATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16791</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>142298</contig_pos>
        <strand>+</strand>
        <context>TTGARCTTTT[C/T]GAAGATCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATAATTCCCTGAACAAACAAAAATGGTTTGGTTTCTCTTTGAGCTTTT</left_flank>
        <right_flank>GAAGATCAAAAATTTCGAAAAAGAAATATTTTTTGCATGTTTTCAGTAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGAAGTGTCACACTTCTAGTAGCATTCTCAATCGATGCTCCAATCACTTGACTGTTGATTACAGTATGCTCTCCGTTATTCAACAAAGCTCCAAATCCAGCAAACGCATATGTTCCAAGTTTTATAGGATTTCTGTTTAAATTTGGAACGGCTCCTTGAGCCACTGGAGTATCGTCTTGGAACGATGAAAGGATACTGGGACCACCTCCGAATACTGTAGGTTGGGAAGAAGAGACAGCAGAGCTCAGAAGAGACGCAGACGGAAGAGTGATTGATGGAGACAGTTTTAAGGATGGGAAGACGATGGTGGTGTTGGTTTCGGCTGGTTGAAGAGGGGGTGCAGCACCCATAACTCTGGAAAAAGGGATTTCAGAAGGATGCTTTAATTTCTGATTTTCAATTTTCGAAATTTCAATTTTTTGAAAATTGAATTCTTTTTTGATCTCCCAATAATTCCCTGAACAAACAAAAATGGTTTGGTTTCTCTTTGAGCTTTTTGAAGATCAAAAATTTCGAAAAAGAAATATTTTTTGCATGTTTTCAGTAAATCCATCTGAAATACAAATTTCAGGCTGGAATTTTCAAAAAAAAAAAGATCACCTCATCATTCCCATATCATCCTGAACGTTTGGAGGAGCGGCAGCAGCTCCGAATGCCTGAGATTCTGGTTCGGAGCGTTCCACTTCCATCGCTGAAATTTTCAAAGGTTAGGATTTTGAAAAAGTCCAATAGAGCGCACTTTCAAACTCAGGATTTCAAATTTCTGGGATTCAAACTCTAAGTTTCGGATTCCCGATTCTGAATTTTCTGAATTCTGAGTTCTGAACCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAG</canonical>
            <polymorphic>TGGGAAGTGTCACACTTCTAGTAGCATTCTCAATCGATGCTCCAATCACTTGACTGTTGATTACAGTATGCTCTCCGTTATTCAACAAAGCTCCAAATCCAGCAAACGCATATGTTCCAAGTTTTATAGGATTTCTGTTTAAATTTGGAACGGCTCCTTGAGCCACTGGAGTATCGTCTTGGAACGATGAAAGGATACTGGGACCACCTCCGAATACTGTAGGTTGGGAAGAAGAGACAGCAGAGCTCAGAAGAGACGCAGACGGAAGAGTGATTGATGGAGACAGTTTTAAGGATGGGAAGACGATGGTGGTGTTGGTTTCGGCTGGTTGAAGAGGGGGTGCAGCACCCATAACTCTGGAAAAAGGGATTTCAGAAGGATGCTTTAATTTCTGATTTTCAATTTTCGAAATTTCAATTTTTTGAAAATTGAATTCTTTTTTGATCTCCCAATAATTCCCTGAACAAACAAAAATGGTTTGGTTTCTCTTTGAGCTTTTYGAAGATCAAAAATTTCGAAAAAGAAATATTTTTTGCATGTTTTCAGTAAATCCATCTGAAATACAAATTTCAGGCTGGAATTTTCAAAAAAAAAAAGATCACCTCATCATTCCCATATCATCCTGAACGTTTGGAGGAGCGGCAGCAGCTCCGAATGCCTGAGATTCTGGTTCGGAGCGTTCCACTTCCATCGCTGAAATTTTCAAAGGTTAGGATTTTGAAAAAGTCCAATAGAGCGCACTTTCAAACTCAGGATTTCAAATTTCTGGGATTCAAACTCTAAGTTTCGGATTCCCGATTCTGAATTTTCTGAATTCTGAGTTCTGAACCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCAGAAGGATGCTTTAATTT</pcr_primer_p1>
		<pcr_primer_p2>ATATGGGAATGATGAGGTGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTCAGAAGGATGCTTTAATTTCTGATTTTCAATTTTCGAAATTTCAATTTTTTGAAAATTGAATTCTTTTTTGATCTCCCAATAATTCCCTGAACAAACAAAAATGGTTTGGTTTCTCTTTGAGCTTTTTGAAGATCAAAAATTTCGAAAAAGAAATATTTTTTGCATGTTTTCAGTAAATCCATCTGAAATACAAATTTCAGGCTGGAATTTTCAAAAAAAAAAAGATCACCTCATCATTCCCATAT</canonical_amplicon>
		<polymorphic_amplicon>ATTTCAGAAGGATGCTTTAATTTCTGATTTTCAATTTTCGAAATTTCAATTTTTTGAAAATTGAATTCTTTTTTGATCTCCCAATAATTCCCTGAACAAACAAAAATGGTTTGGTTTCTCTTTGAGCTTTTYGAAGATCAAAAATTTCGAAAAAGAAATATTTTTTGCATGTTTTCAGTAAATCCATCTGAAATACAAATTTCAGGCTGGAATTTTCAAAAAAAAAAAGATCACCTCATCATTCCCATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16792</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>142292</contig_pos>
        <strand>+</strand>
        <context>TTCTCTTTGA[A/G]CTTTTYGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCTCCCAATAATTCCCTGAACAAACAAAAATGGTTTGGTTTCTCTTTGA</left_flank>
        <right_flank>CTTTTTGAAGATCAAAAATTTCGAAAAAGAAATATTTTTTGCATGTTTTC</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATCATTGGGAAGTGTCACACTTCTAGTAGCATTCTCAATCGATGCTCCAATCACTTGACTGTTGATTACAGTATGCTCTCCGTTATTCAACAAAGCTCCAAATCCAGCAAACGCATATGTTCCAAGTTTTATAGGATTTCTGTTTAAATTTGGAACGGCTCCTTGAGCCACTGGAGTATCGTCTTGGAACGATGAAAGGATACTGGGACCACCTCCGAATACTGTAGGTTGGGAAGAAGAGACAGCAGAGCTCAGAAGAGACGCAGACGGAAGAGTGATTGATGGAGACAGTTTTAAGGATGGGAAGACGATGGTGGTGTTGGTTTCGGCTGGTTGAAGAGGGGGTGCAGCACCCATAACTCTGGAAAAAGGGATTTCAGAAGGATGCTTTAATTTCTGATTTTCAATTTTCGAAATTTCAATTTTTTGAAAATTGAATTCTTTTTTGATCTCCCAATAATTCCCTGAACAAACAAAAATGGTTTGGTTTCTCTTTGAGCTTTTTGAAGATCAAAAATTTCGAAAAAGAAATATTTTTTGCATGTTTTCAGTAAATCCATCTGAAATACAAATTTCAGGCTGGAATTTTCAAAAAAAAAAAGATCACCTCATCATTCCCATATCATCCTGAACGTTTGGAGGAGCGGCAGCAGCTCCGAATGCCTGAGATTCTGGTTCGGAGCGTTCCACTTCCATCGCTGAAATTTTCAAAGGTTAGGATTTTGAAAAAGTCCAATAGAGCGCACTTTCAAACTCAGGATTTCAAATTTCTGGGATTCAAACTCTAAGTTTCGGATTCCCGATTCTGAATTTTCTGAATTCTGAGTTCTGAACCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGA</canonical>
            <polymorphic>GATCATTGGGAAGTGTCACACTTCTAGTAGCATTCTCAATCGATGCTCCAATCACTTGACTGTTGATTACAGTATGCTCTCCGTTATTCAACAAAGCTCCAAATCCAGCAAACGCATATGTTCCAAGTTTTATAGGATTTCTGTTTAAATTTGGAACGGCTCCTTGAGCCACTGGAGTATCGTCTTGGAACGATGAAAGGATACTGGGACCACCTCCGAATACTGTAGGTTGGGAAGAAGAGACAGCAGAGCTCAGAAGAGACGCAGACGGAAGAGTGATTGATGGAGACAGTTTTAAGGATGGGAAGACGATGGTGGTGTTGGTTTCGGCTGGTTGAAGAGGGGGTGCAGCACCCATAACTCTGGAAAAAGGGATTTCAGAAGGATGCTTTAATTTCTGATTTTCAATTTTCGAAATTTCAATTTTTTGAAAATTGAATTCTTTTTTGATCTCCCAATAATTCCCTGAACAAACAAAAATGGTTTGGTTTCTCTTTGARCTTTTTGAAGATCAAAAATTTCGAAAAAGAAATATTTTTTGCATGTTTTCAGTAAATCCATCTGAAATACAAATTTCAGGCTGGAATTTTCAAAAAAAAAAAGATCACCTCATCATTCCCATATCATCCTGAACGTTTGGAGGAGCGGCAGCAGCTCCGAATGCCTGAGATTCTGGTTCGGAGCGTTCCACTTCCATCGCTGAAATTTTCAAAGGTTAGGATTTTGAAAAAGTCCAATAGAGCGCACTTTCAAACTCAGGATTTCAAATTTCTGGGATTCAAACTCTAAGTTTCGGATTCCCGATTCTGAATTTTCTGAATTCTGAGTTCTGAACCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>346 249 155 154 96</canonical_bands>
                <polymorphic_bands>403 346 155 96</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>346 170 96 83 80 79 74 63 9</canonical_bands>
                <polymorphic_bands>346 250 96 83 79 74 63 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCAGAAGGATGCTTTAATTT</pcr_primer_p1>
		<pcr_primer_p2>ATATGGGAATGATGAGGTGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTCAGAAGGATGCTTTAATTTCTGATTTTCAATTTTCGAAATTTCAATTTTTTGAAAATTGAATTCTTTTTTGATCTCCCAATAATTCCCTGAACAAACAAAAATGGTTTGGTTTCTCTTTGAGCTTTTTGAAGATCAAAAATTTCGAAAAAGAAATATTTTTTGCATGTTTTCAGTAAATCCATCTGAAATACAAATTTCAGGCTGGAATTTTCAAAAAAAAAAAGATCACCTCATCATTCCCATAT</canonical_amplicon>
		<polymorphic_amplicon>ATTTCAGAAGGATGCTTTAATTTCTGATTTTCAATTTTCGAAATTTCAATTTTTTGAAAATTGAATTCTTTTTTGATCTCCCAATAATTCCCTGAACAAACAAAAATGGTTTGGTTTCTCTTTGARCTTTTTGAAGATCAAAAATTTCGAAAAAGAAATATTTTTTGCATGTTTTCAGTAAATCCATCTGAAATACAAATTTCAGGCTGGAATTTTCAAAAAAAAAAAGATCACCTCATCATTCCCATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16793</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>142255</contig_pos>
        <strand>+</strand>
        <context>TCCCAATAAT[C/T]CCCTGAACAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAAATTTCAATTTTTTGAAAATTGAATTCTTTTTTGATCTCCCAATAAT</left_flank>
        <right_flank>CCCTGAACAAACAAAAATGGTTTGGTTTCTCTTTGAGCTTTTTGAAGATC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGTTGTCAAATGTTGAAAGGTAAAAGTGACTGGATGATCATTGGGAAGTGTCACACTTCTAGTAGCATTCTCAATCGATGCTCCAATCACTTGACTGTTGATTACAGTATGCTCTCCGTTATTCAACAAAGCTCCAAATCCAGCAAACGCATATGTTCCAAGTTTTATAGGATTTCTGTTTAAATTTGGAACGGCTCCTTGAGCCACTGGAGTATCGTCTTGGAACGATGAAAGGATACTGGGACCACCTCCGAATACTGTAGGTTGGGAAGAAGAGACAGCAGAGCTCAGAAGAGACGCAGACGGAAGAGTGATTGATGGAGACAGTTTTAAGGATGGGAAGACGATGGTGGTGTTGGTTTCGGCTGGTTGAAGAGGGGGTGCAGCACCCATAACTCTGGAAAAAGGGATTTCAGAAGGATGCTTTAATTTCTGATTTTCAATTTTCGAAATTTCAATTTTTTGAAAATTGAATTCTTTTTTGATCTCCCAATAATTCCCTGAACAAACAAAAATGGTTTGGTTTCTCTTTGAGCTTTTTGAAGATCAAAAATTTCGAAAAAGAAATATTTTTTGCATGTTTTCAGTAAATCCATCTGAAATACAAATTTCAGGCTGGAATTTTCAAAAAAAAAAAGATCACCTCATCATTCCCATATCATCCTGAACGTTTGGAGGAGCGGCAGCAGCTCCGAATGCCTGAGATTCTGGTTCGGAGCGTTCCACTTCCATCGCTGAAATTTTCAAAGGTTAGGATTTTGAAAAAGTCCAATAGAGCGCACTTTCAAACTCAGGATTTCAAATTTCTGGGATTCAAACTCTAAGTTTCGGATTCCCGATTCTGAATTTTCTGAATTCTGAGTTCTGAACCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCA</canonical>
            <polymorphic>TTCGTTGTCAAATGTTGAAAGGTAAAAGTGACTGGATGATCATTGGGAAGTGTCACACTTCTAGTAGCATTCTCAATCGATGCTCCAATCACTTGACTGTTGATTACAGTATGCTCTCCGTTATTCAACAAAGCTCCAAATCCAGCAAACGCATATGTTCCAAGTTTTATAGGATTTCTGTTTAAATTTGGAACGGCTCCTTGAGCCACTGGAGTATCGTCTTGGAACGATGAAAGGATACTGGGACCACCTCCGAATACTGTAGGTTGGGAAGAAGAGACAGCAGAGCTCAGAAGAGACGCAGACGGAAGAGTGATTGATGGAGACAGTTTTAAGGATGGGAAGACGATGGTGGTGTTGGTTTCGGCTGGTTGAAGAGGGGGTGCAGCACCCATAACTCTGGAAAAAGGGATTTCAGAAGGATGCTTTAATTTCTGATTTTCAATTTTCGAAATTTCAATTTTTTGAAAATTGAATTCTTTTTTGATCTCCCAATAATYCCCTGAACAAACAAAAATGGTTTGGTTTCTCTTTGAGCTTTTTGAAGATCAAAAATTTCGAAAAAGAAATATTTTTTGCATGTTTTCAGTAAATCCATCTGAAATACAAATTTCAGGCTGGAATTTTCAAAAAAAAAAAGATCACCTCATCATTCCCATATCATCCTGAACGTTTGGAGGAGCGGCAGCAGCTCCGAATGCCTGAGATTCTGGTTCGGAGCGTTCCACTTCCATCGCTGAAATTTTCAAAGGTTAGGATTTTGAAAAAGTCCAATAGAGCGCACTTTCAAACTCAGGATTTCAAATTTCTGGGATTCAAACTCTAAGTTTCGGATTCCCGATTCTGAATTTTCTGAATTCTGAGTTCTGAACCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>245 184 145 119 63 57 55 43 22 14 13 11 9 9 6 5</canonical_bands>
                <polymorphic_bands>245 184 145 119 79 63 55 43 14 13 11 9 9 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGATGGAGACAGTTTTAAGG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCGAAATTTTTGATCTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTGATGGAGACAGTTTTAAGGATGGGAAGACGATGGTGGTGTTGGTTTCGGCTGGTTGAAGAGGGGGTGCAGCACCCATAACTCTGGAAAAAGGGATTTCAGAAGGATGCTTTAATTTCTGATTTTCAATTTTCGAAATTTCAATTTTTTGAAAATTGAATTCTTTTTTGATCTCCCAATAATTCCCTGAACAAACAAAAATGGTTTGGTTTCTCTTTGAGCTTTTTGAAGATCAAAAATTTCGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTGATGGAGACAGTTTTAAGGATGGGAAGACGATGGTGGTGTTGGTTTCGGCTGGTTGAAGAGGGGGTGCAGCACCCATAACTCTGGAAAAAGGGATTTCAGAAGGATGCTTTAATTTCTGATTTTCAATTTTCGAAATTTCAATTTTTTGAAAATTGAATTCTTTTTTGATCTCCCAATAATYCCCTGAACAAACAAAAATGGTTTGGTTTCTCTTTGAGCTTTTTGAAGATCAAAAATTTCGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16794</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>142211</contig_pos>
        <strand></strand>
        <context>TTTTCGAAAT[T/G]TCAATTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AAAGGGATTTCAGAAGGATGCTTTAATTTCTGATTTTCAATTTTCGAAAT</left_flank>
        <right_flank>TCAATTTTTTGAAAATTGAATTCTTTTTTGATCTCCCAATAATTCCCTGA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCCTGAAGATCCCAATAGACACATCTAGGGTTTGAAACCCCTTTCGTTGTCAAATGTTGAAAGGTAAAAGTGACTGGATGATCATTGGGAAGTGTCACACTTCTAGTAGCATTCTCAATCGATGCTCCAATCACTTGACTGTTGATTACAGTATGCTCTCCGTTATTCAACAAAGCTCCAAATCCAGCAAACGCATATGTTCCAAGTTTTATAGGATTTCTGTTTAAATTTGGAACGGCTCCTTGAGCCACTGGAGTATCGTCTTGGAACGATGAAAGGATACTGGGACCACCTCCGAATACTGTAGGTTGGGAAGAAGAGACAGCAGAGCTCAGAAGAGACGCAGACGGAAGAGTGATTGATGGAGACAGTTTTAAGGATGGGAAGACGATGGTGGTGTTGGTTTCGGCTGGTTGAAGAGGGGGTGCAGCACCCATAACTCTGGAAAAAGGGATTTCAGAAGGATGCTTTAATTTCTGATTTTCAATTTTCGAAATTTCAATTTTTTGAAAATTGAATTCTTTTTTGATCTCCCAATAATTCCCTGAACAAACAAAAATGGTTTGGTTTCTCTTTGAGCTTTTTGAAGATCAAAAATTTCGAAAAAGAAATATTTTTTGCATGTTTTCAGTAAATCCATCTGAAATACAAATTTCAGGCTGGAATTTTCAAAAAAAAAAAGATCACCTCATCATTCCCATATCATCCTGAACGTTTGGAGGAGCGGCAGCAGCTCCGAATGCCTGAGATTCTGGTTCGGAGCGTTCCACTTCCATCGCTGAAATTTTCAAAGGTTAGGATTTTGAAAAAGTCCAATAGAGCGCACTTTCAAACTCAGGATTTCAAATTTCTGGGATTCAAACTCTAAGTTTCGGATTCCCGATTCTGAATTTTCTGAATTCTGAGTTCTGAACCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTC</canonical>
            <polymorphic>TCTCCTGAAGATCCCAATAGACACATCTAGGGTTTGAAACCCCTTTCGTTGTCAAATGTTGAAAGGTAAAAGTGACTGGATGATCATTGGGAAGTGTCACACTTCTAGTAGCATTCTCAATCGATGCTCCAATCACTTGACTGTTGATTACAGTATGCTCTCCGTTATTCAACAAAGCTCCAAATCCAGCAAACGCATATGTTCCAAGTTTTATAGGATTTCTGTTTAAATTTGGAACGGCTCCTTGAGCCACTGGAGTATCGTCTTGGAACGATGAAAGGATACTGGGACCACCTCCGAATACTGTAGGTTGGGAAGAAGAGACAGCAGAGCTCAGAAGAGACGCAGACGGAAGAGTGATTGATGGAGACAGTTTTAAGGATGGGAAGACGATGGTGGTGTTGGTTTCGGCTGGTTGAAGAGGGGGTGCAGCACCCATAACTCTGGAAAAAGGGATTTCAGAAGGATGCTTTAATTTCTGATTTTCAATTTTCGAAATKTCAATTTTTTGAAAATTGAATTCTTTTTTGATCTCCCAATAATTCCCTGAACAAACAAAAATGGTTTGGTTTCTCTTTGAGCTTTTTGAAGATCAAAAATTTCGAAAAAGAAATATTTTTTGCATGTTTTCAGTAAATCCATCTGAAATACAAATTTCAGGCTGGAATTTTCAAAAAAAAAAAGATCACCTCATCATTCCCATATCATCCTGAACGTTTGGAGGAGCGGCAGCAGCTCCGAATGCCTGAGATTCTGGTTCGGAGCGTTCCACTTCCATCGCTGAAATTTTCAAAGGTTAGGATTTTGAAAAAGTCCAATAGAGCGCACTTTCAAACTCAGGATTTCAAATTTCTGGGATTCAAACTCTAAGTTTCGGATTCCCGATTCTGAATTTTCTGAATTCTGAGTTCTGAACCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>268 228 119 101 79 63 55 43 22 13 9</canonical_bands>
                <polymorphic_bands>290 228 119 101 79 63 55 43 13 9</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>245 228 119 101 63 57 55 43 22 14 13 11 9 9 6 5</canonical_bands>
                <polymorphic_bands>245 228 119 101 63 57 55 43 22 15 14 13 11 9 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGATGGAGACAGTTTTAAGG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCGAAATTTTTGATCTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTGATGGAGACAGTTTTAAGGATGGGAAGACGATGGTGGTGTTGGTTTCGGCTGGTTGAAGAGGGGGTGCAGCACCCATAACTCTGGAAAAAGGGATTTCAGAAGGATGCTTTAATTTCTGATTTTCAATTTTCGAAATTTCAATTTTTTGAAAATTGAATTCTTTTTTGATCTCCCAATAATTCCCTGAACAAACAAAAATGGTTTGGTTTCTCTTTGAGCTTTTTGAAGATCAAAAATTTCGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTGATGGAGACAGTTTTAAGGATGGGAAGACGATGGTGGTGTTGGTTTCGGCTGGTTGAAGAGGGGGTGCAGCACCCATAACTCTGGAAAAAGGGATTTCAGAAGGATGCTTTAATTTCTGATTTTCAATTTTCGAAATKTCAATTTTTTGAAAATTGAATTCTTTTTTGATCTCCCAATAATTCCCTGAACAAACAAAAATGGTTTGGTTTCTCTTTGAGCTTTTTGAAGATCAAAAATTTCGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16795</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>142010</contig_pos>
        <strand>+</strand>
        <context>GACCACCTCC[A/G]AATACTGTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCACTGGAGTATCGTCTTGGAACGATGAAAGGATACTGGGACCACCTCC</left_flank>
        <right_flank>AATACTGTAGGTTGGGAAGAAGAGACAGCAGAGCTCAGAAGAGACGCAGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGTTTAGGGGTAGTTAGGTATAATCAATTTTTGAGAAAATTCTAAAAAATTGTAGTTCCAAATATTAGAATTTTCGGTTTTCTAAATTTCAGAAGTTCAAAATTTTGATTTTTTTAGGTTTTTGGAATTTCTCAATTTTAGAATTTCAATGAAGAATTCAGAATTTCTGAATTTCCTGAAACTTCTAGACGCTTCTCACCTCTCCTGAAGATCCCAATAGACACATCTAGGGTTTGAAACCCCTTTCGTTGTCAAATGTTGAAAGGTAAAAGTGACTGGATGATCATTGGGAAGTGTCACACTTCTAGTAGCATTCTCAATCGATGCTCCAATCACTTGACTGTTGATTACAGTATGCTCTCCGTTATTCAACAAAGCTCCAAATCCAGCAAACGCATATGTTCCAAGTTTTATAGGATTTCTGTTTAAATTTGGAACGGCTCCTTGAGCCACTGGAGTATCGTCTTGGAACGATGAAAGGATACTGGGACCACCTCCGAATACTGTAGGTTGGGAAGAAGAGACAGCAGAGCTCAGAAGAGACGCAGACGGAAGAGTGATTGATGGAGACAGTTTTAAGGATGGGAAGACGATGGTGGTGTTGGTTTCGGCTGGTTGAAGAGGGGGTGCAGCACCCATAACTCTGGAAAAAGGGATTTCAGAAGGATGCTTTAATTTCTGATTTTCAATTTTCGAAATTTCAATTTTTTGAAAATTGAATTCTTTTTTGATCTCCCAATAATTCCCTGAACAAACAAAAATGGTTTGGTTTCTCTTTGAGCTTTTTGAAGATCAAAAATTTCGAAAAAGAAATATTTTTTGCATGTTTTCAGTAAATCCATCTGAAATACAAATTTCAGGCTGGAATTTTCAAAAAAAAAAAGATCACCTCATCATTCCCATATCATCCTGAACGTTTGGAGGAGCGGCAGCAGCTCCGAATGCCTGAGATTCTGGTTCGGAGCGTTCCACTTCCATCGCTGAAATTTTCAAAGGTTA</canonical>
            <polymorphic>TAGTTTAGGGGTAGTTAGGTATAATCAATTTTTGAGAAAATTCTAAAAAATTGTAGTTCCAAATATTAGAATTTTCGGTTTTCTAAATTTCAGAAGTTCAAAATTTTGATTTTTTTAGGTTTTTGGAATTTCTCAATTTTAGAATTTCAATGAAGAATTCAGAATTTCTGAATTTCCTGAAACTTCTAGACGCTTCTCACCTCTCCTGAAGATCCCAATAGACACATCTAGGGTTTGAAACCCCTTTCGTTGTCAAATGTTGAAAGGTAAAAGTGACTGGATGATCATTGGGAAGTGTCACACTTCTAGTAGCATTCTCAATCGATGCTCCAATCACTTGACTGTTGATTACAGTATGCTCTCCGTTATTCAACAAAGCTCCAAATCCAGCAAACGCATATGTTCCAAGTTTTATAGGATTTCTGTTTAAATTTGGAACGGCTCCTTGAGCCACTGGAGTATCGTCTTGGAACGATGAAAGGATACTGGGACCACCTCCRAATACTGTAGGTTGGGAAGAAGAGACAGCAGAGCTCAGAAGAGACGCAGACGGAAGAGTGATTGATGGAGACAGTTTTAAGGATGGGAAGACGATGGTGGTGTTGGTTTCGGCTGGTTGAAGAGGGGGTGCAGCACCCATAACTCTGGAAAAAGGGATTTCAGAAGGATGCTTTAATTTCTGATTTTCAATTTTCGAAATTTCAATTTTTTGAAAATTGAATTCTTTTTTGATCTCCCAATAATTCCCTGAACAAACAAAAATGGTTTGGTTTCTCTTTGAGCTTTTTGAAGATCAAAAATTTCGAAAAAGAAATATTTTTTGCATGTTTTCAGTAAATCCATCTGAAATACAAATTTCAGGCTGGAATTTTCAAAAAAAAAAAGATCACCTCATCATTCCCATATCATCCTGAACGTTTGGAGGAGCGGCAGCAGCTCCGAATGCCTGAGATTCTGGTTCGGAGCGTTCCACTTCCATCGCTGAAATTTTCAAAGGTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>330 164 125 95 92 69 38 38 22 19 8</canonical_bands>
                <polymorphic_bands>368 164 125 95 92 69 38 22 19 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATCACTTGACTGTTGATTACA</pcr_primer_p1>
		<pcr_primer_p2>TAAAACTGTCTCCATCAATCACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAATCACTTGACTGTTGATTACAGTATGCTCTCCGTTATTCAACAAAGCTCCAAATCCAGCAAACGCATATGTTCCAAGTTTTATAGGATTTCTGTTTAAATTTGGAACGGCTCCTTGAGCCACTGGAGTATCGTCTTGGAACGATGAAAGGATACTGGGACCACCTCCGAATACTGTAGGTTGGGAAGAAGAGACAGCAGAGCTCAGAAGAGACGCAGACGGAAGAGTGATTGATGGAGACAGTTTTA</canonical_amplicon>
		<polymorphic_amplicon>CAATCACTTGACTGTTGATTACAGTATGCTCTCCGTTATTCAACAAAGCTCCAAATCCAGCAAACGCATATGTTCCAAGTTTTATAGGATTTCTGTTTAAATTTGGAACGGCTCCTTGAGCCACTGGAGTATCGTCTTGGAACGATGAAAGGATACTGGGACCACCTCCRAATACTGTAGGTTGGGAAGAAGAGACAGCAGAGCTCAGAAGAGACGCAGACGGAAGAGTGATTGATGGAGACAGTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16796</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>253861</contig_pos>
        <strand>+</strand>
        <context>AACTAGGCCA[A/C]CAATATAGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATGCCACATTGACTGGGTTTGTGGCCTAGAAGCTCGTAAAACTAGGCCA</left_flank>
        <right_flank>CAATATAGGGTCTAAGCTTAAATTGCGTCTGTTGTGATGACCTAGCTTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGAGGAGACTGTGAGAAGATATCTTCGTCGCAAACCACATACCACCAAGGTAGGTTGTGGCCTAGCTGTTTCTAGGCCGCGCTGGCTGGGAATGGAAGAATCCATGTTGGTGGCCTAGAAACTCCTAAAAACTGGGCCACCACGTAATAGGAACCGATTTTTCGTAGTTCAAATTGCGTTCTATGATGACCTAGCTTTTTCTAGGCCACATTGACTGGGTTAGCCCCTTAAAATTAGCAAAAACTAGGCCACGGGATAGTGACTGTTTATAATAAGTTAAATTGCGTCTGTATGGCCTAGAGTTTTCTAGGTCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTCGGCAATTACAATTTCGTCGTTTTTCAACCGCATTCTTTACCAGCCTGTTGTGATGGCCTAGCTTTTTCTATGCCACATTGACTGGGTTTGTGGCCTAGAAGCTCGTAAAACTAGGCCAACAATATAGGGTCTAAGCTTAAATTGCGTCTGTTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGAATACAAATCAAGGATAGGGTGGCCTAGAAACTCACTAGAAAAAACTAGGCCACCAATATCGGGACTAGCTTTTGTAATTTAATTTTAGTTTCCTAAGACCTCTGTATTGATGGCCTAGCTTTTTCCTAGGCCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTTTGGAATTAACATTACGTCGTTTTTTGACCACATTCTTTACCAGCCTGTTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGTATACAAATCAAGCATAGGTGGTCTAGAAGCCCGGAAAAACTAGGCTGCGTAATACGAATTTTTTTGTTTTTAAAATTTAGATTATGATGGCCTAGATTTTCCTAGGTCACTGGGGAATACGGATTCCAGGATAATGGCCTA</canonical>
            <polymorphic>ACGAGGAGACTGTGAGAAGATATCTTCGTCGCAAACCACATACCACCAAGGTAGGTTGTGGCCTAGCTGTTTCTAGGCCGCGCTGGCTGGGAATGGAAGAATCCATGTTGGTGGCCTAGAAACTCCTAAAAACTGGGCCACCACGTAATAGGAACCGATTTTTCGTAGTTCAAATTGCGTTCTATGATGACCTAGCTTTTTCTAGGCCACATTGACTGGGTTAGCCCCTTAAAATTAGCAAAAACTAGGCCACGGGATAGTGACTGTTTATAATAAGTTAAATTGCGTCTGTATGGCCTAGAGTTTTCTAGGTCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTCGGCAATTACAATTTCGTCGTTTTTCAACCGCATTCTTTACCAGCCTGTTGTGATGGCCTAGCTTTTTCTATGCCACATTGACTGGGTTTGTGGCCTAGAAGCTCGTAAAACTAGGCCAMCAATATAGGGTCTAAGCTTAAATTGCGTCTGTTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGAATACAAATCAAGGATAGGGTGGCCTAGAAACTCACTAGAAAAAACTAGGCCACCAATATCGGGACTAGCTTTTGTAATTTAATTTTAGTTTCCTAAGACCTCTGTATTGATGGCCTAGCTTTTTCCTAGGCCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTTTGGAATTAACATTACGTCGTTTTTTGACCACATTCTTTACCAGCCTGTTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGTATACAAATCAAGCATAGGTGGTCTAGAAGCCCGGAAAAACTAGGCTGCGTAATACGAATTTTTTTGTTTTTAAAATTTAGATTATGATGGCCTAGATTTTCCTAGGTCACTGGGGAATACGGATTCCAGGATAATGGCCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTATGCCACATTGACT</pcr_primer_p1>
		<pcr_primer_p2>GCCATCAATACAGAGGTCTTAG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTATGCCACATTGACTGGGTTTGTGGCCTAGAAGCTCGTAAAACTAGGCCAACAATATAGGGTCTAAGCTTAAATTGCGTCTGTTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGAATACAAATCAAGGATAGGGTGGCCTAGAAACTCACTAGAAAAAACTAGGCCACCAATATCGGGACTAGCTTTTGTAATTTAATTTTAGTTTCCTAAGACCTCTGTATTGATGGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTATGCCACATTGACTGGGTTTGTGGCCTAGAAGCTCGTAAAACTAGGCCAMCAATATAGGGTCTAAGCTTAAATTGCGTCTGTTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGAATACAAATCAAGGATAGGGTGGCCTAGAAACTCACTAGAAAAAACTAGGCCACCAATATCGGGACTAGCTTTTGTAATTTAATTTTAGTTTCCTAAGACCTCTGTATTGATGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16797</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>254002</contig_pos>
        <strand></strand>
        <context>TCGGGACTAG[C/A]TTTTGTAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GTGGCCTAGAAACTCACTAGAAAAAACTAGGCCACCAATATCGGGACTAG</left_flank>
        <right_flank>TTTTGTAATTTAATTTTAGTTTCCTAAGACCTCTGTATTGATGGCCTAGC</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACGTAATAGGAACCGATTTTTCGTAGTTCAAATTGCGTTCTATGATGACCTAGCTTTTTCTAGGCCACATTGACTGGGTTAGCCCCTTAAAATTAGCAAAAACTAGGCCACGGGATAGTGACTGTTTATAATAAGTTAAATTGCGTCTGTATGGCCTAGAGTTTTCTAGGTCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTCGGCAATTACAATTTCGTCGTTTTTCAACCGCATTCTTTACCAGCCTGTTGTGATGGCCTAGCTTTTTCTATGCCACATTGACTGGGTTTGTGGCCTAGAAGCTCGTAAAACTAGGCCAACAATATAGGGTCTAAGCTTAAATTGCGTCTGTTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGAATACAAATCAAGGATAGGGTGGCCTAGAAACTCACTAGAAAAAACTAGGCCACCAATATCGGGACTAGCTTTTGTAATTTAATTTTAGTTTCCTAAGACCTCTGTATTGATGGCCTAGCTTTTTCCTAGGCCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTTTGGAATTAACATTACGTCGTTTTTTGACCACATTCTTTACCAGCCTGTTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGTATACAAATCAAGCATAGGTGGTCTAGAAGCCCGGAAAAACTAGGCTGCGTAATACGAATTTTTTTGTTTTTAAAATTTAGATTATGATGGCCTAGATTTTCCTAGGTCACTGGGGAATACGGATTCCAGGATAATGGCCTAGAAGCTCAGAAAACTAGGTCGCCAATATTGGGGTCTTTTTTTTGTAATTCCAATTTTGATGGCCTAGCTTTTTCTAGGCCAAGTTGGCTGGAAAGAGAGTTGATGGCCTAGAGGCTCAGAAAACTAGGCTACCATTATAGA</canonical>
            <polymorphic>CACGTAATAGGAACCGATTTTTCGTAGTTCAAATTGCGTTCTATGATGACCTAGCTTTTTCTAGGCCACATTGACTGGGTTAGCCCCTTAAAATTAGCAAAAACTAGGCCACGGGATAGTGACTGTTTATAATAAGTTAAATTGCGTCTGTATGGCCTAGAGTTTTCTAGGTCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTCGGCAATTACAATTTCGTCGTTTTTCAACCGCATTCTTTACCAGCCTGTTGTGATGGCCTAGCTTTTTCTATGCCACATTGACTGGGTTTGTGGCCTAGAAGCTCGTAAAACTAGGCCAACAATATAGGGTCTAAGCTTAAATTGCGTCTGTTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGAATACAAATCAAGGATAGGGTGGCCTAGAAACTCACTAGAAAAAACTAGGCCACCAATATCGGGACTAGMTTTTGTAATTTAATTTTAGTTTCCTAAGACCTCTGTATTGATGGCCTAGCTTTTTCCTAGGCCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTTTGGAATTAACATTACGTCGTTTTTTGACCACATTCTTTACCAGCCTGTTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGTATACAAATCAAGCATAGGTGGTCTAGAAGCCCGGAAAAACTAGGCTGCGTAATACGAATTTTTTTGTTTTTAAAATTTAGATTATGATGGCCTAGATTTTCCTAGGTCACTGGGGAATACGGATTCCAGGATAATGGCCTAGAAGCTCAGAAAACTAGGTCGCCAATATTGGGGTCTTTTTTTTGTAATTCCAATTTTGATGGCCTAGCTTTTTCTAGGCCAAGTTGGCTGGAAAGAGAGTTGATGGCCTAGAGGCTCAGAAAACTAGGCTACCATTATAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>247 172 142 95 74 63 54 50 40 34 29</canonical_bands>
                <polymorphic_bands>247 172 145 142 74 63 54 40 34 29</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>69 69 58 54 47 47 46 45 36 32 29 29 27 25 25 22 22 20 19 19 18 18 15 14 14 13 13 12 12 12 11 11 11 11 9 9 9 9 8 8 8 5 5 5</canonical_bands>
                <polymorphic_bands>69 69 64 58 54 47 47 46 36 32 29 29 27 25 25 22 22 20 19 18 18 15 14 14 13 13 12 12 12 11 11 11 11 9 9 9 9 8 8 8 5 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTGATGACCTAGCTTTTTCTA</pcr_primer_p1>
		<pcr_primer_p2>TTCCAAAATTAATCCCTATTACA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGAATACAAATCAAGGATAGGGTGGCCTAGAAACTCACTAGAAAAAACTAGGCCACCAATATCGGGACTAGCTTTTGTAATTTAATTTTAGTTTCCTAAGACCTCTGTATTGATGGCCTAGCTTTTTCCTAGGCCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTTTGGAA</canonical_amplicon>
		<polymorphic_amplicon>TTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGAATACAAATCAAGGATAGGGTGGCCTAGAAACTCACTAGAAAAAACTAGGCCACCAATATCGGGACTAGMTTTTGTAATTTAATTTTAGTTTCCTAAGACCTCTGTATTGATGGCCTAGCTTTTTCCTAGGCCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTTTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16798</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>254058</contig_pos>
        <strand>+</strand>
        <context>CTAGCTTTTT[C/T]CTAGGCCACG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATTTAATTTTAGTTTCCTAAGACCTCTGTATTGATGGCCTAGCTTTTT</left_flank>
        <right_flank>CTAGGCCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCC</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCTAGGCCACATTGACTGGGTTAGCCCCTTAAAATTAGCAAAAACTAGGCCACGGGATAGTGACTGTTTATAATAAGTTAAATTGCGTCTGTATGGCCTAGAGTTTTCTAGGTCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTCGGCAATTACAATTTCGTCGTTTTTCAACCGCATTCTTTACCAGCCTGTTGTGATGGCCTAGCTTTTTCTATGCCACATTGACTGGGTTTGTGGCCTAGAAGCTCGTAAAACTAGGCCAACAATATAGGGTCTAAGCTTAAATTGCGTCTGTTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGAATACAAATCAAGGATAGGGTGGCCTAGAAACTCACTAGAAAAAACTAGGCCACCAATATCGGGACTAGCTTTTGTAATTTAATTTTAGTTTCCTAAGACCTCTGTATTGATGGCCTAGCTTTTTCCTAGGCCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTTTGGAATTAACATTACGTCGTTTTTTGACCACATTCTTTACCAGCCTGTTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGTATACAAATCAAGCATAGGTGGTCTAGAAGCCCGGAAAAACTAGGCTGCGTAATACGAATTTTTTTGTTTTTAAAATTTAGATTATGATGGCCTAGATTTTCCTAGGTCACTGGGGAATACGGATTCCAGGATAATGGCCTAGAAGCTCAGAAAACTAGGTCGCCAATATTGGGGTCTTTTTTTTGTAATTCCAATTTTGATGGCCTAGCTTTTTCTAGGCCAAGTTGGCTGGAAAGAGAGTTGATGGCCTAGAGGCTCAGAAAACTAGGCTACCATTATAGAGACTAACTTTTCTAATTCAAAAAGCGTCGTTTTTTGACCTCATTCTCCCTCAGCCT</canonical>
            <polymorphic>TTTTCTAGGCCACATTGACTGGGTTAGCCCCTTAAAATTAGCAAAAACTAGGCCACGGGATAGTGACTGTTTATAATAAGTTAAATTGCGTCTGTATGGCCTAGAGTTTTCTAGGTCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTCGGCAATTACAATTTCGTCGTTTTTCAACCGCATTCTTTACCAGCCTGTTGTGATGGCCTAGCTTTTTCTATGCCACATTGACTGGGTTTGTGGCCTAGAAGCTCGTAAAACTAGGCCAACAATATAGGGTCTAAGCTTAAATTGCGTCTGTTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGAATACAAATCAAGGATAGGGTGGCCTAGAAACTCACTAGAAAAAACTAGGCCACCAATATCGGGACTAGCTTTTGTAATTTAATTTTAGTTTCCTAAGACCTCTGTATTGATGGCCTAGCTTTTTYCTAGGCCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTTTGGAATTAACATTACGTCGTTTTTTGACCACATTCTTTACCAGCCTGTTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGTATACAAATCAAGCATAGGTGGTCTAGAAGCCCGGAAAAACTAGGCTGCGTAATACGAATTTTTTTGTTTTTAAAATTTAGATTATGATGGCCTAGATTTTCCTAGGTCACTGGGGAATACGGATTCCAGGATAATGGCCTAGAAGCTCAGAAAACTAGGTCGCCAATATTGGGGTCTTTTTTTTGTAATTCCAATTTTGATGGCCTAGCTTTTTCTAGGCCAAGTTGGCTGGAAAGAGAGTTGATGGCCTAGAGGCTCAGAAAACTAGGCTACCATTATAGAGACTAACTTTTCTAATTCAAAAAGCGTCGTTTTTTGACCTCATTCTCCCTCAGCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCTAGG</site>
                <isoschizomers>
                    <enzyme>AvrII</enzyme>
                    <enzyme>BlnI</enzyme>
                    <enzyme>BspA2I</enzyme>
                    <enzyme>XmaJI</enzyme>
                </isoschizomers>
                <canonical_bands>363 237 236 137 27</canonical_bands>
                <polymorphic_bands>390 237 236 137</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>363 237 236 84 53 27</canonical_bands>
                <polymorphic_bands>390 237 236 84 53</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>363 237 236 137 27</canonical_bands>
                <polymorphic_bands>390 237 236 137</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTGATGACCTAGCTTTTTCTA</pcr_primer_p1>
		<pcr_primer_p2>TTCCAAAATTAATCCCTATTACA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGAATACAAATCAAGGATAGGGTGGCCTAGAAACTCACTAGAAAAAACTAGGCCACCAATATCGGGACTAGCTTTTGTAATTTAATTTTAGTTTCCTAAGACCTCTGTATTGATGGCCTAGCTTTTTCCTAGGCCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTTTGGAA</canonical_amplicon>
		<polymorphic_amplicon>TTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGAATACAAATCAAGGATAGGGTGGCCTAGAAACTCACTAGAAAAAACTAGGCCACCAATATCGGGACTAGCTTTTGTAATTTAATTTTAGTTTCCTAAGACCTCTGTATTGATGGCCTAGCTTTTTYCTAGGCCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTTTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16799</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>254072</contig_pos>
        <strand>+</strand>
        <context>GGCCACGTTG[A/G]CTGGGATGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCCTAAGACCTCTGTATTGATGGCCTAGCTTTTTCCTAGGCCACGTTG</left_flank>
        <right_flank>CTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAG</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGACTGGGTTAGCCCCTTAAAATTAGCAAAAACTAGGCCACGGGATAGTGACTGTTTATAATAAGTTAAATTGCGTCTGTATGGCCTAGAGTTTTCTAGGTCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTCGGCAATTACAATTTCGTCGTTTTTCAACCGCATTCTTTACCAGCCTGTTGTGATGGCCTAGCTTTTTCTATGCCACATTGACTGGGTTTGTGGCCTAGAAGCTCGTAAAACTAGGCCAACAATATAGGGTCTAAGCTTAAATTGCGTCTGTTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGAATACAAATCAAGGATAGGGTGGCCTAGAAACTCACTAGAAAAAACTAGGCCACCAATATCGGGACTAGCTTTTGTAATTTAATTTTAGTTTCCTAAGACCTCTGTATTGATGGCCTAGCTTTTTCCTAGGCCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTTTGGAATTAACATTACGTCGTTTTTTGACCACATTCTTTACCAGCCTGTTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGTATACAAATCAAGCATAGGTGGTCTAGAAGCCCGGAAAAACTAGGCTGCGTAATACGAATTTTTTTGTTTTTAAAATTTAGATTATGATGGCCTAGATTTTCCTAGGTCACTGGGGAATACGGATTCCAGGATAATGGCCTAGAAGCTCAGAAAACTAGGTCGCCAATATTGGGGTCTTTTTTTTGTAATTCCAATTTTGATGGCCTAGCTTTTTCTAGGCCAAGTTGGCTGGAAAGAGAGTTGATGGCCTAGAGGCTCAGAAAACTAGGCTACCATTATAGAGACTAACTTTTCTAATTCAAAAAGCGTCGTTTTTTGACCTCATTCTCCCTCAGCCTGTTTCGATGGCCTA</canonical>
            <polymorphic>TTGACTGGGTTAGCCCCTTAAAATTAGCAAAAACTAGGCCACGGGATAGTGACTGTTTATAATAAGTTAAATTGCGTCTGTATGGCCTAGAGTTTTCTAGGTCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTCGGCAATTACAATTTCGTCGTTTTTCAACCGCATTCTTTACCAGCCTGTTGTGATGGCCTAGCTTTTTCTATGCCACATTGACTGGGTTTGTGGCCTAGAAGCTCGTAAAACTAGGCCAACAATATAGGGTCTAAGCTTAAATTGCGTCTGTTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGAATACAAATCAAGGATAGGGTGGCCTAGAAACTCACTAGAAAAAACTAGGCCACCAATATCGGGACTAGCTTTTGTAATTTAATTTTAGTTTCCTAAGACCTCTGTATTGATGGCCTAGCTTTTTCCTAGGCCACGTTGRCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTTTGGAATTAACATTACGTCGTTTTTTGACCACATTCTTTACCAGCCTGTTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGTATACAAATCAAGCATAGGTGGTCTAGAAGCCCGGAAAAACTAGGCTGCGTAATACGAATTTTTTTGTTTTTAAAATTTAGATTATGATGGCCTAGATTTTCCTAGGTCACTGGGGAATACGGATTCCAGGATAATGGCCTAGAAGCTCAGAAAACTAGGTCGCCAATATTGGGGTCTTTTTTTTGTAATTCCAATTTTGATGGCCTAGCTTTTTCTAGGCCAAGTTGGCTGGAAAGAGAGTTGATGGCCTAGAGGCTCAGAAAACTAGGCTACCATTATAGAGACTAACTTTTCTAATTCAAAAAGCGTCGTTTTTTGACCTCATTCTCCCTCAGCCTGTTTCGATGGCCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCCNNNNNGGC</site>
                <isoschizomers>
                    <enzyme>BglI</enzyme>
                </isoschizomers>
                <canonical_bands>351 235 146 141 127</canonical_bands>
                <polymorphic_bands>351 287 235 127</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>311 235 146 141 127 40</canonical_bands>
                <polymorphic_bands>311 287 235 127 40</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>69 69 66 58 47 47 46 45 36 32 29 29 27 25 25 22 22 20 19 19 18 15 14 14 13 13 13 12 12 12 11 11 11 9 9 9 9 8 8 8 5 5 5 4</canonical_bands>
                <polymorphic_bands>69 69 66 58 47 47 46 45 36 32 29 29 27 25 25 22 22 21 20 19 19 18 15 14 14 13 13 13 12 12 11 11 11 9 9 9 8 8 8 5 5 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTGATGACCTAGCTTTTTCTA</pcr_primer_p1>
		<pcr_primer_p2>TTCCAAAATTAATCCCTATTACA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGAATACAAATCAAGGATAGGGTGGCCTAGAAACTCACTAGAAAAAACTAGGCCACCAATATCGGGACTAGCTTTTGTAATTTAATTTTAGTTTCCTAAGACCTCTGTATTGATGGCCTAGCTTTTTCCTAGGCCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTTTGGAA</canonical_amplicon>
		<polymorphic_amplicon>TTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGAATACAAATCAAGGATAGGGTGGCCTAGAAACTCACTAGAAAAAACTAGGCCACCAATATCGGGACTAGCTTTTGTAATTTAATTTTAGTTTCCTAAGACCTCTGTATTGATGGCCTAGCTTTTTCCTAGGCCACGTTGRCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTTTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16800</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>258614</contig_pos>
        <strand></strand>
        <context>CATTTCAATG[A/G]AAGTTTAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTTACCGAATATTATAATAACATTTTTCTCGCTTTTATCATTTCAATG</left_flank>
        <right_flank>AAGTTTAATTTTTCATGATCTCCACATCAGGGATGTTTGGAATGACCTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAACTTTTGTTGCCGAAAGTTGCCGAAATTGCCGAATTTTTGTTTCGGCAAATTGCCGAGTTGCCGAATTGCCGAAAAAATTTTGTTGCTGCACAGGCCTGATTTGCATTCATTTACAAAATTCGGAAACTCTTTTGCTGAAAATCAAACTCTCAAACTCCAAAATTTCCGAATTTTTCATAGTTTCAATTTCTCATAGTTATTAAATAAGTCCCGCCCCCTTACCCTTAAACTGTGATTTTTCAATTTTTATTCAATTGTCGCTTACCCATTCCATTTCCACTTTTGTAATTACGCCATAAAAGGTGAGCCGTACCTCTCGGTACCTGTCTAGACTTCCCCCTTCTCTCCGCTCTCTTATCCTTGTATAGTTTCTCTTATTTTTCTTCTTCTTCTTTCTCATTTCTTTTCCTCACTTTCTTATTGTAACACATGACTTACATCACACTTTTACCGAATATTATAATAACATTTTTCTCGCTTTTATCATTTCAATGAAAGTTTAATTTTTCATGATCTCCACATCAGGGATGTTTGGAATGACCTTGTTGGATTTTTTCGGAATGTCGAATATTCCGATTTCAAAATTTTCGGAATTTAAGAAGTTTTTTTTAAATACTCATGTTTTGAAGTAGAAATTACATTTTACCATCACAAAAACGACGAATAGGTGAAAAATTGGCAAAAAGAGTTCGAAAACGCGAAAAATGGGAAGCACACCTCTAATAGAAGCCCATGAGTTTCTATTTTTACTATTAACAATCACCAAATTCTGTCTGTGTGTCCGTTTGTTCCCGGTTCCACGACCCTAGCGAAGTCCCCAGTAGTCCAAAATTCTCAAATTTTCACAGATTATCAGAAATAGCAGCGAGATGTTGCCCGTCTATTTTTCATTTTGAAATTTTGTTTCTGACGTCATCTGGAGACGTTACTCCATTCCTTCAGTGCAACTCTTTAGAAAATTATTTTCACGTCACTTCCGTCCAACCTCTCTATTT</canonical>
            <polymorphic>CAAAACTTTTGTTGCCGAAAGTTGCCGAAATTGCCGAATTTTTGTTTCGGCAAATTGCCGAGTTGCCGAATTGCCGAAAAAATTTTGTTGCTGCACAGGCCTGATTTGCATTCATTTACAAAATTCGGAAACTCTTTTGCTGAAAATCAAACTCTCAAACTCCAAAATTTCCGAATTTTTCATAGTTTCAATTTCTCATAGTTATTAAATAAGTCCCGCCCCCTTACCCTTAAACTGTGATTTTTCAATTTTTATTCAATTGTCGCTTACCCATTCCATTTCCACTTTTGTAATTACGCCATAAAAGGTGAGCCGTACCTCTCGGTACCTGTCTAGACTTCCCCCTTCTCTCCGCTCTCTTATCCTTGTATAGTTTCTCTTATTTTTCTTCTTCTTCTTTCTCATTTCTTTTCCTCACTTTCTTATTGTAACACATGACTTACATCACACTTTTACCGAATATTATAATAACATTTTTCTCGCTTTTATCATTTCAATGRAAGTTTAATTTTTCATGATCTCCACATCAGGGATGTTTGGAATGACCTTGTTGGATTTTTTCGGAATGTCGAATATTCCGATTTCAAAATTTTCGGAATTTAAGAAGTTTTTTTTAAATACTCATGTTTTGAAGTAGAAATTACATTTTACCATCACAAAAACGACGAATAGGTGAAAAATTGGCAAAAAGAGTTCGAAAACGCGAAAAATGGGAAGCACACCTCTAATAGAAGCCCATGAGTTTCTATTTTTACTATTAACAATCACCAAATTCTGTCTGTGTGTCCGTTTGTTCCCGGTTCCACGACCCTAGCGAAGTCCCCAGTAGTCCAAAATTCTCAAATTTTCACAGATTATCAGAAATAGCAGCGAGATGTTGCCCGTCTATTTTTCATTTTGAAATTTTGTTTCTGACGTCATCTGGAGACGTTACTCCATTCCTTCAGTGCAACTCTTTAGAAAATTATTTTCACGTCACTTCCGTCCAACCTCTCTATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACATGACTTACATCACACTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCAGAATTTTAAAGGTTACTGAACT</pcr_primer_p2>
		<pcr_amplicon_size>683</pcr_amplicon_size>
		<canonical_amplicon>CACATGACTTACATCACACTTTTACCGAATATTATAATAACATTTTTCTCGCTTTTATCATTTCAATGAAAGTTTAATTTTTCATGATCTCCA</canonical_amplicon>
		<polymorphic_amplicon>CACATGACTTACATCACACTTTTACCGAATATTATAATAACATTTTTCTCGCTTTTATCATTTCAATGRAAGTTTAATTTTTCATGATCTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16801</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>258571</contig_pos>
        <strand></strand>
        <context>ACACTTTTAC[C/A]GAATATTATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TCTTTTCCTCACTTTCTTATTGTAACACATGACTTACATCACACTTTTAC</left_flank>
        <right_flank>GAATATTATAATAACATTTTTCTCGCTTTTATCATTTCAATGAAAGTTTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCATGTGAGTTACGTATCGATTTTAATTAAAAAAAAGACACAAAACTTTTGTTGCCGAAAGTTGCCGAAATTGCCGAATTTTTGTTTCGGCAAATTGCCGAGTTGCCGAATTGCCGAAAAAATTTTGTTGCTGCACAGGCCTGATTTGCATTCATTTACAAAATTCGGAAACTCTTTTGCTGAAAATCAAACTCTCAAACTCCAAAATTTCCGAATTTTTCATAGTTTCAATTTCTCATAGTTATTAAATAAGTCCCGCCCCCTTACCCTTAAACTGTGATTTTTCAATTTTTATTCAATTGTCGCTTACCCATTCCATTTCCACTTTTGTAATTACGCCATAAAAGGTGAGCCGTACCTCTCGGTACCTGTCTAGACTTCCCCCTTCTCTCCGCTCTCTTATCCTTGTATAGTTTCTCTTATTTTTCTTCTTCTTCTTTCTCATTTCTTTTCCTCACTTTCTTATTGTAACACATGACTTACATCACACTTTTACCGAATATTATAATAACATTTTTCTCGCTTTTATCATTTCAATGAAAGTTTAATTTTTCATGATCTCCACATCAGGGATGTTTGGAATGACCTTGTTGGATTTTTTCGGAATGTCGAATATTCCGATTTCAAAATTTTCGGAATTTAAGAAGTTTTTTTTAAATACTCATGTTTTGAAGTAGAAATTACATTTTACCATCACAAAAACGACGAATAGGTGAAAAATTGGCAAAAAGAGTTCGAAAACGCGAAAAATGGGAAGCACACCTCTAATAGAAGCCCATGAGTTTCTATTTTTACTATTAACAATCACCAAATTCTGTCTGTGTGTCCGTTTGTTCCCGGTTCCACGACCCTAGCGAAGTCCCCAGTAGTCCAAAATTCTCAAATTTTCACAGATTATCAGAAATAGCAGCGAGATGTTGCCCGTCTATTTTTCATTTTGAAATTTTGTTTCTGACGTCATCTGGAGACGTTACTCCATTCCTTCAGTGCAACTCTT</canonical>
            <polymorphic>TTTTCATGTGAGTTACGTATCGATTTTAATTAAAAAAAAGACACAAAACTTTTGTTGCCGAAAGTTGCCGAAATTGCCGAATTTTTGTTTCGGCAAATTGCCGAGTTGCCGAATTGCCGAAAAAATTTTGTTGCTGCACAGGCCTGATTTGCATTCATTTACAAAATTCGGAAACTCTTTTGCTGAAAATCAAACTCTCAAACTCCAAAATTTCCGAATTTTTCATAGTTTCAATTTCTCATAGTTATTAAATAAGTCCCGCCCCCTTACCCTTAAACTGTGATTTTTCAATTTTTATTCAATTGTCGCTTACCCATTCCATTTCCACTTTTGTAATTACGCCATAAAAGGTGAGCCGTACCTCTCGGTACCTGTCTAGACTTCCCCCTTCTCTCCGCTCTCTTATCCTTGTATAGTTTCTCTTATTTTTCTTCTTCTTCTTTCTCATTTCTTTTCCTCACTTTCTTATTGTAACACATGACTTACATCACACTTTTACMGAATATTATAATAACATTTTTCTCGCTTTTATCATTTCAATGAAAGTTTAATTTTTCATGATCTCCACATCAGGGATGTTTGGAATGACCTTGTTGGATTTTTTCGGAATGTCGAATATTCCGATTTCAAAATTTTCGGAATTTAAGAAGTTTTTTTTAAATACTCATGTTTTGAAGTAGAAATTACATTTTACCATCACAAAAACGACGAATAGGTGAAAAATTGGCAAAAAGAGTTCGAAAACGCGAAAAATGGGAAGCACACCTCTAATAGAAGCCCATGAGTTTCTATTTTTACTATTAACAATCACCAAATTCTGTCTGTGTGTCCGTTTGTTCCCGGTTCCACGACCCTAGCGAAGTCCCCAGTAGTCCAAAATTCTCAAATTTTCACAGATTATCAGAAATAGCAGCGAGATGTTGCCCGTCTATTTTTCATTTTGAAATTTTGTTTCTGACGTCATCTGGAGACGTTACTCCATTCCTTCAGTGCAACTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGCTCTCTTATCCTTGTATAG</pcr_primer_p1>
		<pcr_primer_p2>TCAGAATTTTAAAGGTTACTGAACT</pcr_primer_p2>
		<pcr_amplicon_size>763</pcr_amplicon_size>
		<canonical_amplicon>CCGCTCTCTTATCCTTGTATAGTTTCTCTTATTTTTCTTCTTCTTCTTTCTCATTTCTTTTCCTCACTTTCTTATTGTAACACATGACTTACATCACACTTTTACCGAATATTATAATAACATTTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>CCGCTCTCTTATCCTTGTATAGTTTCTCTTATTTTTCTTCTTCTTCTTTCTCATTTCTTTTCCTCACTTTCTTATTGTAACACATGACTTACATCACACTTTTACMGAATATTATAATAACATTTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16802</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>125241</contig_pos>
        <strand>+</strand>
        <context>TCTTGCTCCA[A/G]AATCTTCTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAACAAACCCCGCCCACTTTTTGGTGGCCTGACTTTTTTCTTGCTCCA</left_flank>
        <right_flank>AATCTTCTGGACTAGGGTCAGGTGTTCCTGGGACACGCCAACTGGCTCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACCACCAGCCCCTTGGCGCCTCTATCTCTCAATGACCCTTTTTTATTGCGCATAATACCGTATTCCGCTGGTTTTATAGGCGAGAGTTTCACGTGAAACGTGATAGTTTTCTGATGCCTATACCGTATATTTTTTCTTTCCCTTTTTTCAAAGAAAGGATAGAAGATTAGGTGATCGGATCATTTTCTGAACTTCCACTTGTAGGAGACGGTTTTGGTCATTAAGGACACGAATGGAACGGGTTTTAAGGTGATATCATGTTTTGATAGGAAATTAGAACTCTATTGGTAAGCCTAGGTTACTGTACCCCGTGGGTACTGTAGACGCACAGTCTCATCAAGAGCTTCAACTAGAATATGAGCATCTAGGGTGTTACTATAACTCGAAAATCACTGCTCCAAAGAACACGCACCCCCAATTGAGCCTCTCTCTCCCGCTTCTTTTTTTCGAAAACAAACCCCGCCCACTTTTTGGTGGCCTGACTTTTTTCTTGCTCCAGAATCTTCTGGACTAGGGTCAGGTGTTCCTGGGACACGCCAACTGGCTCTATGTGTCAATTTTGCGACATCCACCTCGAAAATATTTTTGGATCAAAGTTGAGATTGAAGAGCTAGATTGGATGCACGTGAAGTCAATTTTTCAGAACGAGAAGGGGGAGAGGGGAAGCCCTGTGTGAAGTACCAGATGGCACAAAACACATGTGGCCGAGTTACAGCTGGCCTAAGAAAATCGGGTCACGAATTACGAGTGTTCAGTTGAACATTTTCTGTGAAGTCGGATCAGGTCTAAATATGGTTATTTACGATGGCCTAGGTTTCATTGGTGTGGCCTAGAAATTTGTAGCGAGCTCCTAAAAATCTTAGCTCCGCCGGCAACCAAAATTGGTTCATTTGGAGCAGATGCTGAGAAATTTCAAGCTTTGTGGTTTGAGAATATCCGGTCTAGATTGAAGCCAAGATCTGAAGACCCTTCAAATCTGGTGCAAGTTTTATAATAAAG</canonical>
            <polymorphic>TACCACCAGCCCCTTGGCGCCTCTATCTCTCAATGACCCTTTTTTATTGCGCATAATACCGTATTCCGCTGGTTTTATAGGCGAGAGTTTCACGTGAAACGTGATAGTTTTCTGATGCCTATACCGTATATTTTTTCTTTCCCTTTTTTCAAAGAAAGGATAGAAGATTAGGTGATCGGATCATTTTCTGAACTTCCACTTGTAGGAGACGGTTTTGGTCATTAAGGACACGAATGGAACGGGTTTTAAGGTGATATCATGTTTTGATAGGAAATTAGAACTCTATTGGTAAGCCTAGGTTACTGTACCCCGTGGGTACTGTAGACGCACAGTCTCATCAAGAGCTTCAACTAGAATATGAGCATCTAGGGTGTTACTATAACTCGAAAATCACTGCTCCAAAGAACACGCACCCCCAATTGAGCCTCTCTCTCCCGCTTCTTTTTTTCGAAAACAAACCCCGCCCACTTTTTGGTGGCCTGACTTTTTTCTTGCTCCARAATCTTCTGGACTAGGGTCAGGTGTTCCTGGGACACGCCAACTGGCTCTATGTGTCAATTTTGCGACATCCACCTCGAAAATATTTTTGGATCAAAGTTGAGATTGAAGAGCTAGATTGGATGCACGTGAAGTCAATTTTTCAGAACGAGAAGGGGGAGAGGGGAAGCCCTGTGTGAAGTACCAGATGGCACAAAACACATGTGGCCGAGTTACAGCTGGCCTAAGAAAATCGGGTCACGAATTACGAGTGTTCAGTTGAACATTTTCTGTGAAGTCGGATCAGGTCTAAATATGGTTATTTACGATGGCCTAGGTTTCATTGGTGTGGCCTAGAAATTTGTAGCGAGCTCCTAAAAATCTTAGCTCCGCCGGCAACCAAAATTGGTTCATTTGGAGCAGATGCTGAGAAATTTCAAGCTTTGTGGTTTGAGAATATCCGGTCTAGATTGAAGCCAAGATCTGAAGACCCTTCAAATCTGGTGCAAGTTTTATAATAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>339 230 206 158 57 10</canonical_bands>
                <polymorphic_bands>339 230 206 168 57</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATATGAGCATCTAGGGTGTTA</pcr_primer_p1>
		<pcr_primer_p2>ATCTCAACTTTGATCCAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAATATGAGCATCTAGGGTGTTACTATAACTCGAAAATCACTGCTCCAAAGAACACGCACCCCCAATTGAGCCTCTCTCTCCCGCTTCTTTTTTTCGAAAACAAACCCCGCCCACTTTTTGGTGGCCTGACTTTTTTCTTGCTCCAGAATCTTCTGGACTAGGGTCAGGTGTTCCTGGGACACGCCAACTGGCTCTATGTGTCAATTTTGCGACATCCACCTCGAAAATATTTTTGGATCAAAGTTGAGAT</canonical_amplicon>
		<polymorphic_amplicon>GAATATGAGCATCTAGGGTGTTACTATAACTCGAAAATCACTGCTCCAAAGAACACGCACCCCCAATTGAGCCTCTCTCTCCCGCTTCTTTTTTTCGAAAACAAACCCCGCCCACTTTTTGGTGGCCTGACTTTTTTCTTGCTCCARAATCTTCTGGACTAGGGTCAGGTGTTCCTGGGACACGCCAACTGGCTCTATGTGTCAATTTTGCGACATCCACCTCGAAAATATTTTTGGATCAAAGTTGAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16803</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>125283</contig_pos>
        <strand>+</strand>
        <context>GACACGCCAA[A/C]TGGCTCTATG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGCTCCAGAATCTTCTGGACTAGGGTCAGGTGTTCCTGGGACACGCCAA</left_flank>
        <right_flank>TGGCTCTATGTGTCAATTTTGCGACATCCACCTCGAAAATATTTTTGGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATTGCGCATAATACCGTATTCCGCTGGTTTTATAGGCGAGAGTTTCACGTGAAACGTGATAGTTTTCTGATGCCTATACCGTATATTTTTTCTTTCCCTTTTTTCAAAGAAAGGATAGAAGATTAGGTGATCGGATCATTTTCTGAACTTCCACTTGTAGGAGACGGTTTTGGTCATTAAGGACACGAATGGAACGGGTTTTAAGGTGATATCATGTTTTGATAGGAAATTAGAACTCTATTGGTAAGCCTAGGTTACTGTACCCCGTGGGTACTGTAGACGCACAGTCTCATCAAGAGCTTCAACTAGAATATGAGCATCTAGGGTGTTACTATAACTCGAAAATCACTGCTCCAAAGAACACGCACCCCCAATTGAGCCTCTCTCTCCCGCTTCTTTTTTTCGAAAACAAACCCCGCCCACTTTTTGGTGGCCTGACTTTTTTCTTGCTCCAGAATCTTCTGGACTAGGGTCAGGTGTTCCTGGGACACGCCAACTGGCTCTATGTGTCAATTTTGCGACATCCACCTCGAAAATATTTTTGGATCAAAGTTGAGATTGAAGAGCTAGATTGGATGCACGTGAAGTCAATTTTTCAGAACGAGAAGGGGGAGAGGGGAAGCCCTGTGTGAAGTACCAGATGGCACAAAACACATGTGGCCGAGTTACAGCTGGCCTAAGAAAATCGGGTCACGAATTACGAGTGTTCAGTTGAACATTTTCTGTGAAGTCGGATCAGGTCTAAATATGGTTATTTACGATGGCCTAGGTTTCATTGGTGTGGCCTAGAAATTTGTAGCGAGCTCCTAAAAATCTTAGCTCCGCCGGCAACCAAAATTGGTTCATTTGGAGCAGATGCTGAGAAATTTCAAGCTTTGTGGTTTGAGAATATCCGGTCTAGATTGAAGCCAAGATCTGAAGACCCTTCAAATCTGGTGCAAGTTTTATAATAAAGCGAATTTCTTGGAAATACTGTAAAACCTCTATTAAAAGGGCC</canonical>
            <polymorphic>TTTATTGCGCATAATACCGTATTCCGCTGGTTTTATAGGCGAGAGTTTCACGTGAAACGTGATAGTTTTCTGATGCCTATACCGTATATTTTTTCTTTCCCTTTTTTCAAAGAAAGGATAGAAGATTAGGTGATCGGATCATTTTCTGAACTTCCACTTGTAGGAGACGGTTTTGGTCATTAAGGACACGAATGGAACGGGTTTTAAGGTGATATCATGTTTTGATAGGAAATTAGAACTCTATTGGTAAGCCTAGGTTACTGTACCCCGTGGGTACTGTAGACGCACAGTCTCATCAAGAGCTTCAACTAGAATATGAGCATCTAGGGTGTTACTATAACTCGAAAATCACTGCTCCAAAGAACACGCACCCCCAATTGAGCCTCTCTCTCCCGCTTCTTTTTTTCGAAAACAAACCCCGCCCACTTTTTGGTGGCCTGACTTTTTTCTTGCTCCAGAATCTTCTGGACTAGGGTCAGGTGTTCCTGGGACACGCCAAMTGGCTCTATGTGTCAATTTTGCGACATCCACCTCGAAAATATTTTTGGATCAAAGTTGAGATTGAAGAGCTAGATTGGATGCACGTGAAGTCAATTTTTCAGAACGAGAAGGGGGAGAGGGGAAGCCCTGTGTGAAGTACCAGATGGCACAAAACACATGTGGCCGAGTTACAGCTGGCCTAAGAAAATCGGGTCACGAATTACGAGTGTTCAGTTGAACATTTTCTGTGAAGTCGGATCAGGTCTAAATATGGTTATTTACGATGGCCTAGGTTTCATTGGTGTGGCCTAGAAATTTGTAGCGAGCTCCTAAAAATCTTAGCTCCGCCGGCAACCAAAATTGGTTCATTTGGAGCAGATGCTGAGAAATTTCAAGCTTTGTGGTTTGAGAATATCCGGTCTAGATTGAAGCCAAGATCTGAAGACCCTTCAAATCTGGTGCAAGTTTTATAATAAAGCGAATTTCTTGGAAATACTGTAAAACCTCTATTAAAAGGGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATATGAGCATCTAGGGTGTTA</pcr_primer_p1>
		<pcr_primer_p2>ATCTCAACTTTGATCCAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAATATGAGCATCTAGGGTGTTACTATAACTCGAAAATCACTGCTCCAAAGAACACGCACCCCCAATTGAGCCTCTCTCTCCCGCTTCTTTTTTTCGAAAACAAACCCCGCCCACTTTTTGGTGGCCTGACTTTTTTCTTGCTCCAGAATCTTCTGGACTAGGGTCAGGTGTTCCTGGGACACGCCAACTGGCTCTATGTGTCAATTTTGCGACATCCACCTCGAAAATATTTTTGGATCAAAGTTGAGAT</canonical_amplicon>
		<polymorphic_amplicon>GAATATGAGCATCTAGGGTGTTACTATAACTCGAAAATCACTGCTCCAAAGAACACGCACCCCCAATTGAGCCTCTCTCTCCCGCTTCTTTTTTTCGAAAACAAACCCCGCCCACTTTTTGGTGGCCTGACTTTTTTCTTGCTCCAGAATCTTCTGGACTAGGGTCAGGTGTTCCTGGGACACGCCAAMTGGCTCTATGTGTCAATTTTGCGACATCCACCTCGAAAATATTTTTGGATCAAAGTTGAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16804</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>125402</contig_pos>
        <strand>+</strand>
        <context>AAGGGGGAGA[A/G]GGGAARCCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTAGATTGGATGCACGTGAAGTCAATTTTTCAGAACGAGAAGGGGGAGA</left_flank>
        <right_flank>GGGAAGCCCTGTGTGAAGTACCAGATGGCACAAAACACATGTGGCCGAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAGATTAGGTGATCGGATCATTTTCTGAACTTCCACTTGTAGGAGACGGTTTTGGTCATTAAGGACACGAATGGAACGGGTTTTAAGGTGATATCATGTTTTGATAGGAAATTAGAACTCTATTGGTAAGCCTAGGTTACTGTACCCCGTGGGTACTGTAGACGCACAGTCTCATCAAGAGCTTCAACTAGAATATGAGCATCTAGGGTGTTACTATAACTCGAAAATCACTGCTCCAAAGAACACGCACCCCCAATTGAGCCTCTCTCTCCCGCTTCTTTTTTTCGAAAACAAACCCCGCCCACTTTTTGGTGGCCTGACTTTTTTCTTGCTCCAGAATCTTCTGGACTAGGGTCAGGTGTTCCTGGGACACGCCAACTGGCTCTATGTGTCAATTTTGCGACATCCACCTCGAAAATATTTTTGGATCAAAGTTGAGATTGAAGAGCTAGATTGGATGCACGTGAAGTCAATTTTTCAGAACGAGAAGGGGGAGAGGGGAAGCCCTGTGTGAAGTACCAGATGGCACAAAACACATGTGGCCGAGTTACAGCTGGCCTAAGAAAATCGGGTCACGAATTACGAGTGTTCAGTTGAACATTTTCTGTGAAGTCGGATCAGGTCTAAATATGGTTATTTACGATGGCCTAGGTTTCATTGGTGTGGCCTAGAAATTTGTAGCGAGCTCCTAAAAATCTTAGCTCCGCCGGCAACCAAAATTGGTTCATTTGGAGCAGATGCTGAGAAATTTCAAGCTTTGTGGTTTGAGAATATCCGGTCTAGATTGAAGCCAAGATCTGAAGACCCTTCAAATCTGGTGCAAGTTTTATAATAAAGCGAATTTCTTGGAAATACTGTAAAACCTCTATTAAAAGGGCCTCACTAACAGAGGAGACCTTCGGAAATGCCTCGGAGCAATACGTCCGACTCTTCTAATACGGGTTCTATGGTAGCTACAGAATTAAGCTCTGTTCTTGAATTTCCGCAAGATTAAGCCT</canonical>
            <polymorphic>AGAAGATTAGGTGATCGGATCATTTTCTGAACTTCCACTTGTAGGAGACGGTTTTGGTCATTAAGGACACGAATGGAACGGGTTTTAAGGTGATATCATGTTTTGATAGGAAATTAGAACTCTATTGGTAAGCCTAGGTTACTGTACCCCGTGGGTACTGTAGACGCACAGTCTCATCAAGAGCTTCAACTAGAATATGAGCATCTAGGGTGTTACTATAACTCGAAAATCACTGCTCCAAAGAACACGCACCCCCAATTGAGCCTCTCTCTCCCGCTTCTTTTTTTCGAAAACAAACCCCGCCCACTTTTTGGTGGCCTGACTTTTTTCTTGCTCCAGAATCTTCTGGACTAGGGTCAGGTGTTCCTGGGACACGCCAACTGGCTCTATGTGTCAATTTTGCGACATCCACCTCGAAAATATTTTTGGATCAAAGTTGAGATTGAAGAGCTAGATTGGATGCACGTGAAGTCAATTTTTCAGAACGAGAAGGGGGAGARGGGAAGCCCTGTGTGAAGTACCAGATGGCACAAAACACATGTGGCCGAGTTACAGCTGGCCTAAGAAAATCGGGTCACGAATTACGAGTGTTCAGTTGAACATTTTCTGTGAAGTCGGATCAGGTCTAAATATGGTTATTTACGATGGCCTAGGTTTCATTGGTGTGGCCTAGAAATTTGTAGCGAGCTCCTAAAAATCTTAGCTCCGCCGGCAACCAAAATTGGTTCATTTGGAGCAGATGCTGAGAAATTTCAAGCTTTGTGGTTTGAGAATATCCGGTCTAGATTGAAGCCAAGATCTGAAGACCCTTCAAATCTGGTGCAAGTTTTATAATAAAGCGAATTTCTTGGAAATACTGTAAAACCTCTATTAAAAGGGCCTCACTAACAGAGGAGACCTTCGGAAATGCCTCGGAGCAATACGTCCGACTCTTCTAATACGGGTTCTATGGTAGCTACAGAATTAAGCTCTGTTCTTGAATTTCCGCAAGATTAAGCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTTTTGGATCAAAGTTGAGA</pcr_primer_p1>
		<pcr_primer_p2>AGGCCATCGTAAATAACCATA</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ATATTTTTGGATCAAAGTTGAGATTGAAGAGCTAGATTGGATGCACGTGAAGTCAATTTTTCAGAACGAGAAGGGGGAGAGGGGAAGCCCTGTGTGAAGTACCAGATGGCACAAAACACATGTGGCCGAGTTACAGCTGGCCTAAGAAAATCGGGTCACGAATTACGAGTGTTCAGTTGAACATTTTCTGTGAAGTCGGATCAGGTCTAAATATGGTTATTTACGATGGCCT</canonical_amplicon>
		<polymorphic_amplicon>ATATTTTTGGATCAAAGTTGAGATTGAAGAGCTAGATTGGATGCACGTGAAGTCAATTTTTCAGAACGAGAAGGGGGAGARGGGAAGCCCTGTGTGAAGTACCAGATGGCACAAAACACATGTGGCCGAGTTACAGCTGGCCTAAGAAAATCGGGTCACGAATTACGAGTGTTCAGTTGAACATTTTCTGTGAAGTCGGATCAGGTCTAAATATGGTTATTTACGATGGCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16805</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>125408</contig_pos>
        <strand>+</strand>
        <context>GAGARGGGAA[A/G]CCCTGTGTGW</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGGATGCACGTGAAGTCAATTTTTCAGAACGAGAAGGGGGAGAGGGGAA</left_flank>
        <right_flank>CCCTGTGTGAAGTACCAGATGGCACAAAACACATGTGGCCGAGTTACAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAGGTGATCGGATCATTTTCTGAACTTCCACTTGTAGGAGACGGTTTTGGTCATTAAGGACACGAATGGAACGGGTTTTAAGGTGATATCATGTTTTGATAGGAAATTAGAACTCTATTGGTAAGCCTAGGTTACTGTACCCCGTGGGTACTGTAGACGCACAGTCTCATCAAGAGCTTCAACTAGAATATGAGCATCTAGGGTGTTACTATAACTCGAAAATCACTGCTCCAAAGAACACGCACCCCCAATTGAGCCTCTCTCTCCCGCTTCTTTTTTTCGAAAACAAACCCCGCCCACTTTTTGGTGGCCTGACTTTTTTCTTGCTCCAGAATCTTCTGGACTAGGGTCAGGTGTTCCTGGGACACGCCAACTGGCTCTATGTGTCAATTTTGCGACATCCACCTCGAAAATATTTTTGGATCAAAGTTGAGATTGAAGAGCTAGATTGGATGCACGTGAAGTCAATTTTTCAGAACGAGAAGGGGGAGAGGGGAAGCCCTGTGTGAAGTACCAGATGGCACAAAACACATGTGGCCGAGTTACAGCTGGCCTAAGAAAATCGGGTCACGAATTACGAGTGTTCAGTTGAACATTTTCTGTGAAGTCGGATCAGGTCTAAATATGGTTATTTACGATGGCCTAGGTTTCATTGGTGTGGCCTAGAAATTTGTAGCGAGCTCCTAAAAATCTTAGCTCCGCCGGCAACCAAAATTGGTTCATTTGGAGCAGATGCTGAGAAATTTCAAGCTTTGTGGTTTGAGAATATCCGGTCTAGATTGAAGCCAAGATCTGAAGACCCTTCAAATCTGGTGCAAGTTTTATAATAAAGCGAATTTCTTGGAAATACTGTAAAACCTCTATTAAAAGGGCCTCACTAACAGAGGAGACCTTCGGAAATGCCTCGGAGCAATACGTCCGACTCTTCTAATACGGGTTCTATGGTAGCTACAGAATTAAGCTCTGTTCTTGAATTTCCGCAAGATTAAGCCTTGTTTT</canonical>
            <polymorphic>TTAGGTGATCGGATCATTTTCTGAACTTCCACTTGTAGGAGACGGTTTTGGTCATTAAGGACACGAATGGAACGGGTTTTAAGGTGATATCATGTTTTGATAGGAAATTAGAACTCTATTGGTAAGCCTAGGTTACTGTACCCCGTGGGTACTGTAGACGCACAGTCTCATCAAGAGCTTCAACTAGAATATGAGCATCTAGGGTGTTACTATAACTCGAAAATCACTGCTCCAAAGAACACGCACCCCCAATTGAGCCTCTCTCTCCCGCTTCTTTTTTTCGAAAACAAACCCCGCCCACTTTTTGGTGGCCTGACTTTTTTCTTGCTCCAGAATCTTCTGGACTAGGGTCAGGTGTTCCTGGGACACGCCAACTGGCTCTATGTGTCAATTTTGCGACATCCACCTCGAAAATATTTTTGGATCAAAGTTGAGATTGAAGAGCTAGATTGGATGCACGTGAAGTCAATTTTTCAGAACGAGAAGGGGGAGAGGGGAARCCCTGTGTGAAGTACCAGATGGCACAAAACACATGTGGCCGAGTTACAGCTGGCCTAAGAAAATCGGGTCACGAATTACGAGTGTTCAGTTGAACATTTTCTGTGAAGTCGGATCAGGTCTAAATATGGTTATTTACGATGGCCTAGGTTTCATTGGTGTGGCCTAGAAATTTGTAGCGAGCTCCTAAAAATCTTAGCTCCGCCGGCAACCAAAATTGGTTCATTTGGAGCAGATGCTGAGAAATTTCAAGCTTTGTGGTTTGAGAATATCCGGTCTAGATTGAAGCCAAGATCTGAAGACCCTTCAAATCTGGTGCAAGTTTTATAATAAAGCGAATTTCTTGGAAATACTGTAAAACCTCTATTAAAAGGGCCTCACTAACAGAGGAGACCTTCGGAAATGCCTCGGAGCAATACGTCCGACTCTTCTAATACGGGTTCTATGGTAGCTACAGAATTAAGCTCTGTTCTTGAATTTCCGCAAGATTAAGCCTTGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>126 89 87 80 76 67 66 56 54 54 51 38 35 29 20 19 16 13 11 9 4</canonical_bands>
                <polymorphic_bands>126 94 89 87 80 76 67 66 54 54 51 35 29 20 19 16 13 11 9 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATTTTTGGATCAAAGTTGAGA</pcr_primer_p1>
		<pcr_primer_p2>AGGCCATCGTAAATAACCATA</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ATATTTTTGGATCAAAGTTGAGATTGAAGAGCTAGATTGGATGCACGTGAAGTCAATTTTTCAGAACGAGAAGGGGGAGAGGGGAAGCCCTGTGTGAAGTACCAGATGGCACAAAACACATGTGGCCGAGTTACAGCTGGCCTAAGAAAATCGGGTCACGAATTACGAGTGTTCAGTTGAACATTTTCTGTGAAGTCGGATCAGGTCTAAATATGGTTATTTACGATGGCCT</canonical_amplicon>
		<polymorphic_amplicon>ATATTTTTGGATCAAAGTTGAGATTGAAGAGCTAGATTGGATGCACGTGAAGTCAATTTTTCAGAACGAGAAGGGGGAGAGGGGAARCCCTGTGTGAAGTACCAGATGGCACAAAACACATGTGGCCGAGTTACAGCTGGCCTAAGAAAATCGGGTCACGAATTACGAGTGTTCAGTTGAACATTTTCTGTGAAGTCGGATCAGGTCTAAATATGGTTATTTACGATGGCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16806</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>125418</contig_pos>
        <strand>+</strand>
        <context>RCCCTGTGTG[A/T]AGTACCAGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGAAGTCAATTTTTCAGAACGAGAAGGGGGAGAGGGGAAGCCCTGTGTG</left_flank>
        <right_flank>AGTACCAGATGGCACAAAACACATGTGGCCGAGTTACAGCTGGCCTAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATCATTTTCTGAACTTCCACTTGTAGGAGACGGTTTTGGTCATTAAGGACACGAATGGAACGGGTTTTAAGGTGATATCATGTTTTGATAGGAAATTAGAACTCTATTGGTAAGCCTAGGTTACTGTACCCCGTGGGTACTGTAGACGCACAGTCTCATCAAGAGCTTCAACTAGAATATGAGCATCTAGGGTGTTACTATAACTCGAAAATCACTGCTCCAAAGAACACGCACCCCCAATTGAGCCTCTCTCTCCCGCTTCTTTTTTTCGAAAACAAACCCCGCCCACTTTTTGGTGGCCTGACTTTTTTCTTGCTCCAGAATCTTCTGGACTAGGGTCAGGTGTTCCTGGGACACGCCAACTGGCTCTATGTGTCAATTTTGCGACATCCACCTCGAAAATATTTTTGGATCAAAGTTGAGATTGAAGAGCTAGATTGGATGCACGTGAAGTCAATTTTTCAGAACGAGAAGGGGGAGAGGGGAAGCCCTGTGTGAAGTACCAGATGGCACAAAACACATGTGGCCGAGTTACAGCTGGCCTAAGAAAATCGGGTCACGAATTACGAGTGTTCAGTTGAACATTTTCTGTGAAGTCGGATCAGGTCTAAATATGGTTATTTACGATGGCCTAGGTTTCATTGGTGTGGCCTAGAAATTTGTAGCGAGCTCCTAAAAATCTTAGCTCCGCCGGCAACCAAAATTGGTTCATTTGGAGCAGATGCTGAGAAATTTCAAGCTTTGTGGTTTGAGAATATCCGGTCTAGATTGAAGCCAAGATCTGAAGACCCTTCAAATCTGGTGCAAGTTTTATAATAAAGCGAATTTCTTGGAAATACTGTAAAACCTCTATTAAAAGGGCCTCACTAACAGAGGAGACCTTCGGAAATGCCTCGGAGCAATACGTCCGACTCTTCTAATACGGGTTCTATGGTAGCTACAGAATTAAGCTCTGTTCTTGAATTTCCGCAAGATTAAGCCTTGTTTTATACTACTAG</canonical>
            <polymorphic>GGATCATTTTCTGAACTTCCACTTGTAGGAGACGGTTTTGGTCATTAAGGACACGAATGGAACGGGTTTTAAGGTGATATCATGTTTTGATAGGAAATTAGAACTCTATTGGTAAGCCTAGGTTACTGTACCCCGTGGGTACTGTAGACGCACAGTCTCATCAAGAGCTTCAACTAGAATATGAGCATCTAGGGTGTTACTATAACTCGAAAATCACTGCTCCAAAGAACACGCACCCCCAATTGAGCCTCTCTCTCCCGCTTCTTTTTTTCGAAAACAAACCCCGCCCACTTTTTGGTGGCCTGACTTTTTTCTTGCTCCAGAATCTTCTGGACTAGGGTCAGGTGTTCCTGGGACACGCCAACTGGCTCTATGTGTCAATTTTGCGACATCCACCTCGAAAATATTTTTGGATCAAAGTTGAGATTGAAGAGCTAGATTGGATGCACGTGAAGTCAATTTTTCAGAACGAGAAGGGGGAGAGGGGAAGCCCTGTGTGWAGTACCAGATGGCACAAAACACATGTGGCCGAGTTACAGCTGGCCTAAGAAAATCGGGTCACGAATTACGAGTGTTCAGTTGAACATTTTCTGTGAAGTCGGATCAGGTCTAAATATGGTTATTTACGATGGCCTAGGTTTCATTGGTGTGGCCTAGAAATTTGTAGCGAGCTCCTAAAAATCTTAGCTCCGCCGGCAACCAAAATTGGTTCATTTGGAGCAGATGCTGAGAAATTTCAAGCTTTGTGGTTTGAGAATATCCGGTCTAGATTGAAGCCAAGATCTGAAGACCCTTCAAATCTGGTGCAAGTTTTATAATAAAGCGAATTTCTTGGAAATACTGTAAAACCTCTATTAAAAGGGCCTCACTAACAGAGGAGACCTTCGGAAATGCCTCGGAGCAATACGTCCGACTCTTCTAATACGGGTTCTATGGTAGCTACAGAATTAAGCTCTGTTCTTGAATTTCCGCAAGATTAAGCCTTGTTTTATACTACTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGTGAAGTCAATTTTTCAGA</pcr_primer_p1>
		<pcr_primer_p2>CGGAGCTAAGATTTTTAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACGTGAAGTCAATTTTTCAGAACGAGAAGGGGGAGAGGGGAAGCCCTGTGTGAAGTACCAGATGGCACAAAACACATGTGGCCGAGTTACAGCTGGCCTAAGAAAATCGGGTCACGAATTACGAGTGTTCAGTTGAACATTTTCTGTGAAGTCGGATCAGGTCTAAATATGGTTATTTACGATGGCCTAGGTTTCATTGGTGTGGCCTAGAAATTTGTAGCGAGCTCCTAAAAATCTTAGCTCCG</canonical_amplicon>
		<polymorphic_amplicon>ACGTGAAGTCAATTTTTCAGAACGAGAAGGGGGAGAGGGGAAGCCCTGTGTGWAGTACCAGATGGCACAAAACACATGTGGCCGAGTTACAGCTGGCCTAAGAAAATCGGGTCACGAATTACGAGTGTTCAGTTGAACATTTTCTGTGAAGTCGGATCAGGTCTAAATATGGTTATTTACGATGGCCTAGGTTTCATTGGTGTGGCCTAGAAATTTGTAGCGAGCTCCTAAAAATCTTAGCTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16807</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>129534</contig_pos>
        <strand>+</strand>
        <context>TCGCCGACCA[A/C]GCTGGCCGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATAAGGCGTCCATGGTCGAAAATCGGCGACCGCCGACCGATCGCCGACCA</left_flank>
        <right_flank>GCTGGCCGAATTTTTGTATTGTGATTCACGAAACGCGTCGTAAAATAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCAGGAGAAGAAGAAGGTGGCTGTTCTTCTTCTTCTTATTCTTTTGATAGTGATATACTGTAGCTGATTTCTTCTTCTTCTTCTTTTATTCTTCAAAGACATCTTTCTCATTTTCTTCTCTTTCATCTATTTCTTGTCCTTTTCTCTCCATTTACGTGACTTCCCTCATCTTCTTCTTTTCAGCACCCCACTCTCTGGAAATGCTCCTCGCCAGCAGCAGCCCAAATCCACGTGGCGCCATGAAGCTGCTCCTCGAGCCAGTGTGCTCCAATGACAACAATAACAAATCCACATATTTCGACGATTCGTGCTGCTCCGAACCCAACTCACCGGATTCCGGATTCTCATCAGATGATAGTATTGCATCCGACGTCTCGTTCTGTGAAAGACTGTGAGTTTGGGGATACTGTAGATTGCTCAGCATTAAGAACCAAATTGAAATAAATCATAAGGCGTCCATGGTCGAAAATCGGCGACCGCCGACCGATCGCCGACCACGCTGGCCGAATTTTTGTATTGTGATTCACGAAACGCGTCGTAAAATAAAATATTGCTTACGCAAACACTGGAATATGGAAATGCAAAAAATCGGCCGGCTTGGTCGGCGGACGGTCGGCGCGGTCGGTCGGCGCGGACCGTCAATGGTCCGTCGATGGTCCGTCGGTGATCCATCGGTGATCCGTCGTTGGTCCCTCATTGGTCCGTCGTTGGTCCGTCGGTGGTCCGCCGGCGGTCCGTCGGCGGTCGCTCGGTCGGCTGTCGGTCGGCTAAGTTTCATCCCTCTTCTCATCTTCTATTTTCTTCCTCTTTTTCTCCCGAATCACCTAGAAACTACGGGTGTTATCAACCGCGCATCACCCCTCTATCACTTTGTGGTACTTGTTTACCCTACCTTACATAGAAAGAATCGGAAACCATATGATTTATTGCCTTATCTCTCCTCCCCATGTCTTCTAAAAAAACTTTGCTTTCTGTGGTCTTTTGTTCCGTTTCGTGAT</canonical>
            <polymorphic>TATCAGGAGAAGAAGAAGGTGGCTGTTCTTCTTCTTCTTATTCTTTTGATAGTGATATACTGTAGCTGATTTCTTCTTCTTCTTCTTTTATTCTTCAAAGACATCTTTCTCATTTTCTTCTCTTTCATCTATTTCTTGTCCTTTTCTCTCCATTTACGTGACTTCCCTCATCTTCTTCTTTTCAGCACCCCACTCTCTGGAAATGCTCCTCGCCAGCAGCAGCCCAAATCCACGTGGCGCCATGAAGCTGCTCCTCGAGCCAGTGTGCTCCAATGACAACAATAACAAATCCACATATTTCGACGATTCGTGCTGCTCCGAACCCAACTCACCGGATTCCGGATTCTCATCAGATGATAGTATTGCATCCGACGTCTCGTTCTGTGAAAGACTGTGAGTTTGGGGATACTGTAGATTGCTCAGCATTAAGAACCAAATTGAAATAAATCATAAGGCGTCCATGGTCGAAAATCGGCGACCGCCGACCGATCGCCGACCAMGCTGGCCGAATTTTTGTATTGTGATTCACGAAACGCGTCGTAAAATAAAATATTGCTTACGCAAACACTGGAATATGGAAATGCAAAAAATCGGCCGGCTTGGTCGGCGGACGGTCGGCGCGGTCGGTCGGCGCGGACCGTCAATGGTCCGTCGATGGTCCGTCGGTGATCCATCGGTGATCCGTCGTTGGTCCCTCATTGGTCCGTCGTTGGTCCGTCGGTGGTCCGCCGGCGGTCCGTCGGCGGTCGCTCGGTCGGCTGTCGGTCGGCTAAGTTTCATCCCTCTTCTCATCTTCTATTTTCTTCCTCTTTTTCTCCCGAATCACCTAGAAACTACGGGTGTTATCAACCGCGCATCACCCCTCTATCACTTTGTGGTACTTGTTTACCCTACCTTACATAGAAAGAATCGGAAACCATATGATTTATTGCCTTATCTCTCCTCCCCATGTCTTCTAAAAAAACTTTGCTTTCTGTGGTCTTTTGTTCCGTTTCGTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>106 103 102 101 101 55 44 40 39 33 29 27 26 24 21 20 19 19 17 17 11 11 10 7 5 5 4 2 2</canonical_bands>
                <polymorphic_bands>127 106 102 101 101 55 44 40 39 33 29 27 26 21 20 19 19 17 17 11 11 10 7 5 5 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTCGTTCTGTGAAAGACTGT</pcr_primer_p1>
		<pcr_primer_p2>TTGCATTTCCATATTCCAGT</pcr_primer_p2>
		<pcr_amplicon_size>213</pcr_amplicon_size>
		<canonical_amplicon>GTCTCGTTCTGTGAAAGACTGTGAGTTTGGGGATACTGTAGATTGCTCAGCATTAAGAACCAAATTGAAATAAATCATAAGGCGTCCATGGTCGAAAATCGGCGACCGCCGACCGATCGCCGACCACGCTGGCCGAATTTTTGTATTGTGATTCACGAAACGCGTCGTAAAATAAAATATTGCTTACGCAAACACTGGAATATGGAAATGCAA</canonical_amplicon>
		<polymorphic_amplicon>GTCTCGTTCTGTGAAAGACTGTGAGTTTGGGGATACTGTAGATTGCTCAGCATTAAGAACCAAATTGAAATAAATCATAAGGCGTCCATGGTCGAAAATCGGCGACCGCCGACCGATCGCCGACCAMGCTGGCCGAATTTTTGTATTGTGATTCACGAAACGCGTCGTAAAATAAAATATTGCTTACGCAAACACTGGAATATGGAAATGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16808</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>129496</contig_pos>
        <strand>+</strand>
        <context>AAGGCGTCCA[C/T]GGTCGAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGATTGCTCAGCATTAAGAACCAAATTGAAATAAATCATAAGGCGTCCA</left_flank>
        <right_flank>GGTCGAAAATCGGCGACCGCCGACCGATCGCCGACCACGCTGGCCGAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTCACGTAGTACCTCCTGTATAAACAGTGTCTGTTTTATCAGGAGAAGAAGAAGGTGGCTGTTCTTCTTCTTCTTATTCTTTTGATAGTGATATACTGTAGCTGATTTCTTCTTCTTCTTCTTTTATTCTTCAAAGACATCTTTCTCATTTTCTTCTCTTTCATCTATTTCTTGTCCTTTTCTCTCCATTTACGTGACTTCCCTCATCTTCTTCTTTTCAGCACCCCACTCTCTGGAAATGCTCCTCGCCAGCAGCAGCCCAAATCCACGTGGCGCCATGAAGCTGCTCCTCGAGCCAGTGTGCTCCAATGACAACAATAACAAATCCACATATTTCGACGATTCGTGCTGCTCCGAACCCAACTCACCGGATTCCGGATTCTCATCAGATGATAGTATTGCATCCGACGTCTCGTTCTGTGAAAGACTGTGAGTTTGGGGATACTGTAGATTGCTCAGCATTAAGAACCAAATTGAAATAAATCATAAGGCGTCCATGGTCGAAAATCGGCGACCGCCGACCGATCGCCGACCACGCTGGCCGAATTTTTGTATTGTGATTCACGAAACGCGTCGTAAAATAAAATATTGCTTACGCAAACACTGGAATATGGAAATGCAAAAAATCGGCCGGCTTGGTCGGCGGACGGTCGGCGCGGTCGGTCGGCGCGGACCGTCAATGGTCCGTCGATGGTCCGTCGGTGATCCATCGGTGATCCGTCGTTGGTCCCTCATTGGTCCGTCGTTGGTCCGTCGGTGGTCCGCCGGCGGTCCGTCGGCGGTCGCTCGGTCGGCTGTCGGTCGGCTAAGTTTCATCCCTCTTCTCATCTTCTATTTTCTTCCTCTTTTTCTCCCGAATCACCTAGAAACTACGGGTGTTATCAACCGCGCATCACCCCTCTATCACTTTGTGGTACTTGTTTACCCTACCTTACATAGAAAGAATCGGAAACCATATGATTTATTGCCTTATCTCTCCTCCCCATGTCTTCTAAAAA</canonical>
            <polymorphic>TCTTCACGTAGTACCTCCTGTATAAACAGTGTCTGTTTTATCAGGAGAAGAAGAAGGTGGCTGTTCTTCTTCTTCTTATTCTTTTGATAGTGATATACTGTAGCTGATTTCTTCTTCTTCTTCTTTTATTCTTCAAAGACATCTTTCTCATTTTCTTCTCTTTCATCTATTTCTTGTCCTTTTCTCTCCATTTACGTGACTTCCCTCATCTTCTTCTTTTCAGCACCCCACTCTCTGGAAATGCTCCTCGCCAGCAGCAGCCCAAATCCACGTGGCGCCATGAAGCTGCTCCTCGAGCCAGTGTGCTCCAATGACAACAATAACAAATCCACATATTTCGACGATTCGTGCTGCTCCGAACCCAACTCACCGGATTCCGGATTCTCATCAGATGATAGTATTGCATCCGACGTCTCGTTCTGTGAAAGACTGTGAGTTTGGGGATACTGTAGATTGCTCAGCATTAAGAACCAAATTGAAATAAATCATAAGGCGTCCAYGGTCGAAAATCGGCGACCGCCGACCGATCGCCGACCACGCTGGCCGAATTTTTGTATTGTGATTCACGAAACGCGTCGTAAAATAAAATATTGCTTACGCAAACACTGGAATATGGAAATGCAAAAAATCGGCCGGCTTGGTCGGCGGACGGTCGGCGCGGTCGGTCGGCGCGGACCGTCAATGGTCCGTCGATGGTCCGTCGGTGATCCATCGGTGATCCGTCGTTGGTCCCTCATTGGTCCGTCGTTGGTCCGTCGGTGGTCCGCCGGCGGTCCGTCGGCGGTCGCTCGGTCGGCTGTCGGTCGGCTAAGTTTCATCCCTCTTCTCATCTTCTATTTTCTTCCTCTTTTTCTCCCGAATCACCTAGAAACTACGGGTGTTATCAACCGCGCATCACCCCTCTATCACTTTGTGGTACTTGTTTACCCTACCTTACATAGAAAGAATCGGAAACCATATGATTTATTGCCTTATCTCTCCTCCCCATGTCTTCTAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCATGG</site>
                <isoschizomers>
                    <enzyme>Bsp19I</enzyme>
                    <enzyme>NcoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>488 279 219 14</canonical_bands>
                <polymorphic_bands>707 279 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCCACATATTTCGACGAT</pcr_primer_p1>
		<pcr_primer_p2>TTTCGTGAATCACAATACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATCCACATATTTCGACGATTCGTGCTGCTCCGAACCCAACTCACCGGATTCCGGATTCTCATCAGATGATAGTATTGCATCCGACGTCTCGTTCTGTGAAAGACTGTGAGTTTGGGGATACTGTAGATTGCTCAGCATTAAGAACCAAATTGAAATAAATCATAAGGCGTCCATGGTCGAAAATCGGCGACCGCCGACCGATCGCCGACCACGCTGGCCGAATTTTTGTATTGTGATTCACGAAA</canonical_amplicon>
		<polymorphic_amplicon>AAATCCACATATTTCGACGATTCGTGCTGCTCCGAACCCAACTCACCGGATTCCGGATTCTCATCAGATGATAGTATTGCATCCGACGTCTCGTTCTGTGAAAGACTGTGAGTTTGGGGATACTGTAGATTGCTCAGCATTAAGAACCAAATTGAAATAAATCATAAGGCGTCCAYGGTCGAAAATCGGCGACCGCCGACCGATCGCCGACCACGCTGGCCGAATTTTTGTATTGTGATTCACGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16809</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>142937</contig_pos>
        <strand>+</strand>
        <context>CATCGGCTCT[C/T]TCTTGGGATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCATGGGAATAGGCAAAGGGGGCGGAGTCACAACGTTACCATCGGCTCT</left_flank>
        <right_flank>TCTTGGGATGTAGCTCCGCCGGTTTTCGAGGAGGAGCTAGAAGCGGTGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACAACCAGGTAGTTAGAAGGCTAGCTTACTTTTAGAATTTTTAGAATTTTCAAAAATCTAGAATTTCCAAATAGTTCCCAAACATTCTAGTCCCAAAAAAACTGTTCTATTTATATTTGCTTTAAAAAAAAATCGGCGAAAACCGAGACGCAGACATTTCCCGAACGATCTAATTTGTTTACTTTTTGTCACTCTCTTCCTCTTGTCAAAGTTCAGAACGGTTCTGTTGACTCGTCAACTTCTCCCTTTTCAGGAGAAAAAGTCAGAAAACAAAAAACTTCAGGAAATGCTCAATAGCTTAGCCCCCTCAGATTTTTGATCTCTCAAAAAAATCAAAACTTACAATGGAGTCAATCCCTCAGTCAACGAAACTCGATTCCTCTTCGCCGGCGGTCCTTGCAGTCCATTATTTGAAGCTGATGACGTGGCAGATGGAGAAGGTGTCACCGCCATGGGAATAGGCAAAGGGGGCGGAGTCACAACGTTACCATCGGCTCTTTCTTGGGATGTAGCTCCGCCGGTTTTCGAGGAGGAGCTAGAAGCGGTGGAAGCAGAGCTGGAATCCACATCGGTTGAGGATTTTGATGAATGAGTTTCTTGGGTTCGAATCAATTCATTTTCGATGAATGACATGGCTGCTTCCATTGGAGACACGTGGCCTGGACCACTACCAGCTTCGTTCTTGATTGAGTGATCGGAGGAGGGGTTGGAGTCGGTTTCATCGGTGCTGGAATATGAGGATTTGGGTTATTCAAGTAGTTATAGAGGTCTGAAAAACTAGTTTTGCATAATCAGGTTGTCCGTAAAACCTGTAATAGAAGGACCCCCTGTCTTTCAACTTTGAGCCAATTTATCTCGGTTTCTGACAAAGATTTACAAAAGTTGTCAACTGATAAACTGTTCATCATAATATTAGAAGTGTTCTGTCAGTTGATACATTTTTGATATCTTTCACAGGAAGCTAATGTTAAATTGTTTTCTGAATTTCTAGTTTTTGAT</canonical>
            <polymorphic>CACAACCAGGTAGTTAGAAGGCTAGCTTACTTTTAGAATTTTTAGAATTTTCAAAAATCTAGAATTTCCAAATAGTTCCCAAACATTCTAGTCCCAAAAAAACTGTTCTATTTATATTTGCTTTAAAAAAAAATCGGCGAAAACCGAGACGCAGACATTTCCCGAACGATCTAATTTGTTTACTTTTTGTCACTCTCTTCCTCTTGTCAAAGTTCAGAACGGTTCTGTTGACTCGTCAACTTCTCCCTTTTCAGGAGAAAAAGTCAGAAAACAAAAAACTTCAGGAAATGCTCAATAGCTTAGCCCCCTCAGATTTTTGATCTCTCAAAAAAATCAAAACTTACAATGGAGTCAATCCCTCAGTCAACGAAACTCGATTCCTCTTCGCCGGCGGTCCTTGCAGTCCATTATTTGAAGCTGATGACGTGGCAGATGGAGAAGGTGTCACCGCCATGGGAATAGGCAAAGGGGGCGGAGTCACAACGTTACCATCGGCTCTYTCTTGGGATGTAGCTCCGCCGGTTTTCGAGGAGGAGCTAGAAGCGGTGGAAGCAGAGCTGGAATCCACATCGGTTGAGGATTTTGATGAATGAGTTTCTTGGGTTCGAATCAATTCATTTTCGATGAATGACATGGCTGCTTCCATTGGAGACACGTGGCCTGGACCACTACCAGCTTCGTTCTTGATTGAGTGATCGGAGGAGGGGTTGGAGTCGGTTTCATCGGTGCTGGAATATGAGGATTTGGGTTATTCAAGTAGTTATAGAGGTCTGAAAAACTAGTTTTGCATAATCAGGTTGTCCGTAAAACCTGTAATAGAAGGACCCCCTGTCTTTCAACTTTGAGCCAATTTATCTCGGTTTCTGACAAAGATTTACAAAAGTTGTCAACTGATAAACTGTTCATCATAATATTAGAAGTGTTCTGTCAGTTGATACATTTTTGATATCTTTCACAGGAAGCTAATGTTAAATTGTTTTCTGAATTTCTAGTTTTTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCCTCAGTCAACGAAACT</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAACTCATTCATCAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATCCCTCAGTCAACGAAACTCGATTCCTCTTCGCCGGCGGTCCTTGCAGTCCATTATTTGAAGCTGATGACGTGGCAGATGGAGAAGGTGTCACCGCCATGGGAATAGGCAAAGGGGGCGGAGTCACAACGTTACCATCGGCTCTTTCTTGGGATGTAGCTCCGCCGGTTTTCGAGGAGGAGCTAGAAGCGGTGGAAGCAGAGCTGGAATCCACATCGGTTGAGGATTTTGATGAATGAGTTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>ATCCCTCAGTCAACGAAACTCGATTCCTCTTCGCCGGCGGTCCTTGCAGTCCATTATTTGAAGCTGATGACGTGGCAGATGGAGAAGGTGTCACCGCCATGGGAATAGGCAAAGGGGGCGGAGTCACAACGTTACCATCGGCTCTYTCTTGGGATGTAGCTCCGCCGGTTTTCGAGGAGGAGCTAGAAGCGGTGGAAGCAGAGCTGGAATCCACATCGGTTGAGGATTTTGATGAATGAGTTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16810</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>146924</contig_pos>
        <strand>+</strand>
        <context>AAATCTATTG[C/T]GAAAGTTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTATTTTTCACAATCAAATTATTTTGGAATTCTAAAACAAATCTATTG</left_flank>
        <right_flank>GAAAGTTTTCAGAACATCGATTTTCGGCAACGGAAAATTCAAAAATAAAA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTATAGCCCCCTCTGAAATTCATTCAAGCACATTTGAAGGATAGACAGTAAGTGGGAATTGGAAACTTTAATAGAGGCCCACCCCCGTTTGAGCTCAATTATCTCGGTTTCTGTAACAGATATCAAAAATCTGTCAACTGATAAAATAATGGCGACGTTATGATAAACATTTTACCAGTTGACCACTTTTTGATATATTTTAAAAGAACGCAGTAAATTCAGATCAAGCGCGCATATAGGGAAGGTTTCTATTAGAGCTTCTCCTCTACGTGCTCTATAATATTGTTGATTTTATGATAAAAATTTTATCAGTTGAAAACTTTTTGATATTTTCCGAAGAAACCAAGATAATTGAGCTCAAAGTGTATGTATAGGGTAGGCTTCTTATTGAGCACATAGGGTAATTAACAATTGAAGAACATATGTTGTCAACTCTGGAACCTGGAAAATCTATTTTTCACAATCAAATTATTTTGGAATTCTAAAACAAATCTATTGCGAAAGTTTTCAGAACATCGATTTTCGGCAACGGAAAATTCAAAAATAAAAACTGTCGAAATACCGTAACTCAATCAGTTTTGCTTTAAACTCAACAAAATTTGAATATATCAATTTCTCATCATGCGAGCTTCAAATTGAGTATAAACACGCCTAGGCTCCGCCCATTTTCAAAATTCGGAACCCATTGTGCATTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTAGTGCAAAGCCATTTTTGAATATGGAAACTATAACAGATGCAGATGAAAATTGCCTTACAAATTTTGTCAGAAAAATTGGAAAAAATTGAGAATTTTCGAAAACTCGTTTTTAAAGTTTGAAAAAATTGTTATTTACGGAATTATAATTATTATAACATGGAAGAAAAGTTTTAAAAATTTAAGGATGGGGTTGTGTTTTTACAAACGACAGTGATGACATATGGACACAGATACAGATATAACATAC</canonical>
            <polymorphic>CCTATAGCCCCCTCTGAAATTCATTCAAGCACATTTGAAGGATAGACAGTAAGTGGGAATTGGAAACTTTAATAGAGGCCCACCCCCGTTTGAGCTCAATTATCTCGGTTTCTGTAACAGATATCAAAAATCTGTCAACTGATAAAATAATGGCGACGTTATGATAAACATTTTACCAGTTGACCACTTTTTGATATATTTTAAAAGAACGCAGTAAATTCAGATCAAGCGCGCATATAGGGAAGGTTTCTATTAGAGCTTCTCCTCTACGTGCTCTATAATATTGTTGATTTTATGATAAAAATTTTATCAGTTGAAAACTTTTTGATATTTTCCGAAGAAACCAAGATAATTGAGCTCAAAGTGTATGTATAGGGTAGGCTTCTTATTGAGCACATAGGGTAATTAACAATTGAAGAACATATGTTGTCAACTCTGGAACCTGGAAAATCTATTTTTCACAATCAAATTATTTTGGAATTCTAAAACAAATCTATTGYGAAAGTTTTCAGAACATCGATTTTCGGCAACGGAAAATTCAAAAATAAAAACTGTCGAAATACCGTAACTCAATCAGTTTTGCTTTAAACTCAACAAAATTTGAATATATCAATTTCTCATCATGCGAGCTTCAAATTGAGTATAAACACGCCTAGGCTCCGCCCATTTTCAAAATTCGGAACCCATTGTGCATTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTAGTGCAAAGCCATTTTTGAATATGGAAACTATAACAGATGCAGATGAAAATTGCCTTACAAATTTTGTCAGAAAAATTGGAAAAAATTGAGAATTTTCGAAAACTCGTTTTTAAAGTTTGAAAAAATTGTTATTTACGGAATTATAATTATTATAACATGGAAGAAAAGTTTTAAAAATTTAAGGATGGGGTTGTGTTTTTACAAACGACAGTGATGACATATGGACACAGATACAGATATAACATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATAGGGTAGGCTTCTTATTG</pcr_primer_p1>
		<pcr_primer_p2>CGACAGTTTTTATTTTTGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>189</pcr_amplicon_size>
		<canonical_amplicon>TGTATAGGGTAGGCTTCTTATTGAGCACATAGGGTAATTAACAATTGAAGAACATATGTTGTCAACTCTGGAACCTGGAAAATCTATTTTTCACAATCAAATTATTTTGGAATTCTAAAACAAATCTATTGCGAAAGTTTTCAGAACATCGATTTTCGGCAACGGAAAATTCAAAAATAAAAACTGTCG</canonical_amplicon>
		<polymorphic_amplicon>TGTATAGGGTAGGCTTCTTATTGAGCACATAGGGTAATTAACAATTGAAGAACATATGTTGTCAACTCTGGAACCTGGAAAATCTATTTTTCACAATCAAATTATTTTGGAATTCTAAAACAAATCTATTGYGAAAGTTTTCAGAACATCGATTTTCGGCAACGGAAAATTCAAAAATAAAAACTGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16811</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>146880</contig_pos>
        <strand>+</strand>
        <context>GAAAATCTAT[A/T]TTTCACAATC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAACAATTGAAGAACATATGTTGTCAACTCTGGAACCTGGAAAATCTAT</left_flank>
        <right_flank>TTTCACAATCAAATTATTTTGGAATTCTAAAACAAATCTATTGCGAAAGT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGAAGCTTCAGAATACCGGAAATGATCTAGTAGAAGCCCACCCTATAGCCCCCTCTGAAATTCATTCAAGCACATTTGAAGGATAGACAGTAAGTGGGAATTGGAAACTTTAATAGAGGCCCACCCCCGTTTGAGCTCAATTATCTCGGTTTCTGTAACAGATATCAAAAATCTGTCAACTGATAAAATAATGGCGACGTTATGATAAACATTTTACCAGTTGACCACTTTTTGATATATTTTAAAAGAACGCAGTAAATTCAGATCAAGCGCGCATATAGGGAAGGTTTCTATTAGAGCTTCTCCTCTACGTGCTCTATAATATTGTTGATTTTATGATAAAAATTTTATCAGTTGAAAACTTTTTGATATTTTCCGAAGAAACCAAGATAATTGAGCTCAAAGTGTATGTATAGGGTAGGCTTCTTATTGAGCACATAGGGTAATTAACAATTGAAGAACATATGTTGTCAACTCTGGAACCTGGAAAATCTATTTTTCACAATCAAATTATTTTGGAATTCTAAAACAAATCTATTGCGAAAGTTTTCAGAACATCGATTTTCGGCAACGGAAAATTCAAAAATAAAAACTGTCGAAATACCGTAACTCAATCAGTTTTGCTTTAAACTCAACAAAATTTGAATATATCAATTTCTCATCATGCGAGCTTCAAATTGAGTATAAACACGCCTAGGCTCCGCCCATTTTCAAAATTCGGAACCCATTGTGCATTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTAGTGCAAAGCCATTTTTGAATATGGAAACTATAACAGATGCAGATGAAAATTGCCTTACAAATTTTGTCAGAAAAATTGGAAAAAATTGAGAATTTTCGAAAACTCGTTTTTAAAGTTTGAAAAAATTGTTATTTACGGAATTATAATTATTATAACATGGAAGAAAAGTTTTAAAAATTTAAGGATGGGGTTGTGTTTTTACA</canonical>
            <polymorphic>TTTGGAAGCTTCAGAATACCGGAAATGATCTAGTAGAAGCCCACCCTATAGCCCCCTCTGAAATTCATTCAAGCACATTTGAAGGATAGACAGTAAGTGGGAATTGGAAACTTTAATAGAGGCCCACCCCCGTTTGAGCTCAATTATCTCGGTTTCTGTAACAGATATCAAAAATCTGTCAACTGATAAAATAATGGCGACGTTATGATAAACATTTTACCAGTTGACCACTTTTTGATATATTTTAAAAGAACGCAGTAAATTCAGATCAAGCGCGCATATAGGGAAGGTTTCTATTAGAGCTTCTCCTCTACGTGCTCTATAATATTGTTGATTTTATGATAAAAATTTTATCAGTTGAAAACTTTTTGATATTTTCCGAAGAAACCAAGATAATTGAGCTCAAAGTGTATGTATAGGGTAGGCTTCTTATTGAGCACATAGGGTAATTAACAATTGAAGAACATATGTTGTCAACTCTGGAACCTGGAAAATCTATWTTTCACAATCAAATTATTTTGGAATTCTAAAACAAATCTATTGCGAAAGTTTTCAGAACATCGATTTTCGGCAACGGAAAATTCAAAAATAAAAACTGTCGAAATACCGTAACTCAATCAGTTTTGCTTTAAACTCAACAAAATTTGAATATATCAATTTCTCATCATGCGAGCTTCAAATTGAGTATAAACACGCCTAGGCTCCGCCCATTTTCAAAATTCGGAACCCATTGTGCATTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTAGTGCAAAGCCATTTTTGAATATGGAAACTATAACAGATGCAGATGAAAATTGCCTTACAAATTTTGTCAGAAAAATTGGAAAAAATTGAGAATTTTCGAAAACTCGTTTTTAAAGTTTGAAAAAATTGTTATTTACGGAATTATAATTATTATAACATGGAAGAAAAGTTTTAAAAATTTAAGGATGGGGTTGTGTTTTTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATAGGGTAGGCTTCTTATTG</pcr_primer_p1>
		<pcr_primer_p2>CGACAGTTTTTATTTTTGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>189</pcr_amplicon_size>
		<canonical_amplicon>TGTATAGGGTAGGCTTCTTATTGAGCACATAGGGTAATTAACAATTGAAGAACATATGTTGTCAACTCTGGAACCTGGAAAATCTATTTTTCACAATCAAATTATTTTGGAATTCTAAAACAAATCTATTGCGAAAGTTTTCAGAACATCGATTTTCGGCAACGGAAAATTCAAAAATAAAAACTGTCG</canonical_amplicon>
		<polymorphic_amplicon>TGTATAGGGTAGGCTTCTTATTGAGCACATAGGGTAATTAACAATTGAAGAACATATGTTGTCAACTCTGGAACCTGGAAAATCTATWTTTCACAATCAAATTATTTTGGAATTCTAAAACAAATCTATTGCGAAAGTTTTCAGAACATCGATTTTCGGCAACGGAAAATTCAAAAATAAAAACTGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16812</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>157938</contig_pos>
        <strand>+</strand>
        <context>TTATCTTTCC[C/T]AGCTGAGCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATAAGAATTTTGAGCCACTTTCGGGTTATTTTCCAAGAATTATCTTTCC</left_flank>
        <right_flank>AGCTGAGCTAGGCTAGATCTCAGAAAGTCATAAGGGTCCTAAACCTAGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAGAAGGAGCGAAGACAAAGCGAAATACACAACACCACAAAATCGGTTTGATTCATAACGGGCGGACAGCTCCTTTCCCCCTCGCTTCATTTTTTCCGTTTTCCAATTCGAACGATGTCGGCATATGTAGTCGTCATGACGAAACCAATTCTGCTAAATTCAAGGGATACGGTGAGGCCAAGTGACGTGGACCTTTTCGCTTCTCTCGATTTTTTCACAACTTTGGGCTTCGGAATCCCGAGATAGACGGGAAGGGAAAAAAGTTGGGAAGGCGGATCGAAACGATCCCCGGGGAGTATTACATTTATACAAAGAAGAAAGAAGGAATAGAAGAAGAAAGACTCATCCTCGGCTATCACTCTCTTCTTTTTCTCGTTTGGTTTTCCAAAAATTTCGTATTTGGAAGTTGGCTGAATTCGTCATGTTTTTGAATTTTTGAAGGTCAAAATAAGAATTTTGAGCCACTTTCGGGTTATTTTCCAAGAATTATCTTTCCCAGCTGAGCTAGGCTAGATCTCAGAAAGTCATAAGGGTCCTAAACCTAGATAGGTCAGATTCTAGAACTATCCAATCTATCTGGAGCTCAGGTTGGCTGGCCTTATTTGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAG</canonical>
            <polymorphic>AAAAAGAAGGAGCGAAGACAAAGCGAAATACACAACACCACAAAATCGGTTTGATTCATAACGGGCGGACAGCTCCTTTCCCCCTCGCTTCATTTTTTCCGTTTTCCAATTCGAACGATGTCGGCATATGTAGTCGTCATGACGAAACCAATTCTGCTAAATTCAAGGGATACGGTGAGGCCAAGTGACGTGGACCTTTTCGCTTCTCTCGATTTTTTCACAACTTTGGGCTTCGGAATCCCGAGATAGACGGGAAGGGAAAAAAGTTGGGAAGGCGGATCGAAACGATCCCCGGGGAGTATTACATTTATACAAAGAAGAAAGAAGGAATAGAAGAAGAAAGACTCATCCTCGGCTATCACTCTCTTCTTTTTCTCGTTTGGTTTTCCAAAAATTTCGTATTTGGAAGTTGGCTGAATTCGTCATGTTTTTGAATTTTTGAAGGTCAAAATAAGAATTTTGAGCCACTTTCGGGTTATTTTCCAAGAATTATCTTTCCYAGCTGAGCTAGGCTAGATCTCAGAAAGTCATAAGGGTCCTAAACCTAGATAGGTCAGATTCTAGAACTATCCAATCTATCTGGAGCTCAGGTTGGCTGGCCTTATTTGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAAGAAGAAAGAAGGAATAGAA</pcr_primer_p1>
		<pcr_primer_p2>AATCTGACCTATCTAGGTTTAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAAAGAAGAAAGAAGGAATAGAAGAAGAAAGACTCATCCTCGGCTATCACTCTCTTCTTTTTCTCGTTTGGTTTTCCAAAAATTTCGTATTTGGAAGTTGGCTGAATTCGTCATGTTTTTGAATTTTTGAAGGTCAAAATAAGAATTTTGAGCCACTTTCGGGTTATTTTCCAAGAATTATCTTTCCCAGCTGAGCTAGGCTAGATCTCAGAAAGTCATAAGGGTCCTAAACCTAGATAGGTCAGATT</canonical_amplicon>
		<polymorphic_amplicon>ACAAAGAAGAAAGAAGGAATAGAAGAAGAAAGACTCATCCTCGGCTATCACTCTCTTCTTTTTCTCGTTTGGTTTTCCAAAAATTTCGTATTTGGAAGTTGGCTGAATTCGTCATGTTTTTGAATTTTTGAAGGTCAAAATAAGAATTTTGAGCCACTTTCGGGTTATTTTCCAAGAATTATCTTTCCYAGCTGAGCTAGGCTAGATCTCAGAAAGTCATAAGGGTCCTAAACCTAGATAGGTCAGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16813</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>158007</contig_pos>
        <strand>+</strand>
        <context>TTCTAGAACT[A/T]TCCAATCTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCAGAAAGTCATAAGGGTCCTAAACCTAGATAGGTCAGATTCTAGAACT</left_flank>
        <right_flank>TCCAATCTATCTGGAGCTCAGGTTGGCTGGCCTTATTTGCTCTTATAGCA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCTCCTTTCCCCCTCGCTTCATTTTTTCCGTTTTCCAATTCGAACGATGTCGGCATATGTAGTCGTCATGACGAAACCAATTCTGCTAAATTCAAGGGATACGGTGAGGCCAAGTGACGTGGACCTTTTCGCTTCTCTCGATTTTTTCACAACTTTGGGCTTCGGAATCCCGAGATAGACGGGAAGGGAAAAAAGTTGGGAAGGCGGATCGAAACGATCCCCGGGGAGTATTACATTTATACAAAGAAGAAAGAAGGAATAGAAGAAGAAAGACTCATCCTCGGCTATCACTCTCTTCTTTTTCTCGTTTGGTTTTCCAAAAATTTCGTATTTGGAAGTTGGCTGAATTCGTCATGTTTTTGAATTTTTGAAGGTCAAAATAAGAATTTTGAGCCACTTTCGGGTTATTTTCCAAGAATTATCTTTCCCAGCTGAGCTAGGCTAGATCTCAGAAAGTCATAAGGGTCCTAAACCTAGATAGGTCAGATTCTAGAACTATCCAATCTATCTGGAGCTCAGGTTGGCTGGCCTTATTTGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGGGGGGATACGGTATGAACCTTCCTAGATTTTCCAATTTCTGGAGGTCTAACCTTTTAGCCTCTGAAAGT</canonical>
            <polymorphic>CAGCTCCTTTCCCCCTCGCTTCATTTTTTCCGTTTTCCAATTCGAACGATGTCGGCATATGTAGTCGTCATGACGAAACCAATTCTGCTAAATTCAAGGGATACGGTGAGGCCAAGTGACGTGGACCTTTTCGCTTCTCTCGATTTTTTCACAACTTTGGGCTTCGGAATCCCGAGATAGACGGGAAGGGAAAAAAGTTGGGAAGGCGGATCGAAACGATCCCCGGGGAGTATTACATTTATACAAAGAAGAAAGAAGGAATAGAAGAAGAAAGACTCATCCTCGGCTATCACTCTCTTCTTTTTCTCGTTTGGTTTTCCAAAAATTTCGTATTTGGAAGTTGGCTGAATTCGTCATGTTTTTGAATTTTTGAAGGTCAAAATAAGAATTTTGAGCCACTTTCGGGTTATTTTCCAAGAATTATCTTTCCCAGCTGAGCTAGGCTAGATCTCAGAAAGTCATAAGGGTCCTAAACCTAGATAGGTCAGATTCTAGAACTWTCCAATCTATCTGGAGCTCAGGTTGGCTGGCCTTATTTGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGGGGGGATACGGTATGAACCTTCCTAGATTTTCCAATTTCTGGAGGTCTAACCTTTTAGCCTCTGAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCTAGATCTCAGAAAGTCATAA</pcr_primer_p1>
		<pcr_primer_p2>CCTCCCATCCCTTCTAATAA</pcr_primer_p2>
		<pcr_amplicon_size>491</pcr_amplicon_size>
		<canonical_amplicon>GGCTAGATCTCAGAAAGTCATAAGGGTCCTAAACCTAGATAGGTCAGATTCTAGAACTATCCAATCTATCTGGAGCTCAGGTTGGCTGGCCTTATTTGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGG</canonical_amplicon>
		<polymorphic_amplicon>GGCTAGATCTCAGAAAGTCATAAGGGTCCTAAACCTAGATAGGTCAGATTCTAGAACTWTCCAATCTATCTGGAGCTCAGGTTGGCTGGCCTTATTTGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16814</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>158042</contig_pos>
        <strand>+</strand>
        <context>GGCTGGCCTT[A/G]TTTGCTCTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAGATTCTAGAACTATCCAATCTATCTGGAGCTCAGGTTGGCTGGCCTT</left_flank>
        <right_flank>TTTGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAATTCGAACGATGTCGGCATATGTAGTCGTCATGACGAAACCAATTCTGCTAAATTCAAGGGATACGGTGAGGCCAAGTGACGTGGACCTTTTCGCTTCTCTCGATTTTTTCACAACTTTGGGCTTCGGAATCCCGAGATAGACGGGAAGGGAAAAAAGTTGGGAAGGCGGATCGAAACGATCCCCGGGGAGTATTACATTTATACAAAGAAGAAAGAAGGAATAGAAGAAGAAAGACTCATCCTCGGCTATCACTCTCTTCTTTTTCTCGTTTGGTTTTCCAAAAATTTCGTATTTGGAAGTTGGCTGAATTCGTCATGTTTTTGAATTTTTGAAGGTCAAAATAAGAATTTTGAGCCACTTTCGGGTTATTTTCCAAGAATTATCTTTCCCAGCTGAGCTAGGCTAGATCTCAGAAAGTCATAAGGGTCCTAAACCTAGATAGGTCAGATTCTAGAACTATCCAATCTATCTGGAGCTCAGGTTGGCTGGCCTTATTTGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGGGGGGATACGGTATGAACCTTCCTAGATTTTCCAATTTCTGGAGGTCTAACCTTTTAGCCTCTGAAAGTTCAAAAATCCAGACGACACAACCATCTTTTTTTTC</canonical>
            <polymorphic>TCCAATTCGAACGATGTCGGCATATGTAGTCGTCATGACGAAACCAATTCTGCTAAATTCAAGGGATACGGTGAGGCCAAGTGACGTGGACCTTTTCGCTTCTCTCGATTTTTTCACAACTTTGGGCTTCGGAATCCCGAGATAGACGGGAAGGGAAAAAAGTTGGGAAGGCGGATCGAAACGATCCCCGGGGAGTATTACATTTATACAAAGAAGAAAGAAGGAATAGAAGAAGAAAGACTCATCCTCGGCTATCACTCTCTTCTTTTTCTCGTTTGGTTTTCCAAAAATTTCGTATTTGGAAGTTGGCTGAATTCGTCATGTTTTTGAATTTTTGAAGGTCAAAATAAGAATTTTGAGCCACTTTCGGGTTATTTTCCAAGAATTATCTTTCCCAGCTGAGCTAGGCTAGATCTCAGAAAGTCATAAGGGTCCTAAACCTAGATAGGTCAGATTCTAGAACTATCCAATCTATCTGGAGCTCAGGTTGGCTGGCCTTRTTTGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGGGGGGATACGGTATGAACCTTCCTAGATTTTCCAATTTCTGGAGGTCTAACCTTTTAGCCTCTGAAAGTTCAAAAATCCAGACGACACAACCATCTTTTTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTAAACCTAGATAGGTCAGATTC</pcr_primer_p1>
		<pcr_primer_p2>CCTCCCATCCCTTCTAATAA</pcr_primer_p2>
		<pcr_amplicon_size>464</pcr_amplicon_size>
		<canonical_amplicon>CCTAAACCTAGATAGGTCAGATTCTAGAACTATCCAATCTATCTGGAGCTCAGGTTGGCTGGCCTTATTTGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGG</canonical_amplicon>
		<polymorphic_amplicon>CCTAAACCTAGATAGGTCAGATTCTAGAACTATCCAATCTATCTGGAGCTCAGGTTGGCTGGCCTTRTTTGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16815</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>158417</contig_pos>
        <strand></strand>
        <context>RTACAACGGG[A/C]TTTTATTAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGG</left_flank>
        <right_flank>TTTTATTAGAAGGGATGGGAGGGGGGATACGGTATGAACCTTCCTAGATT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCAAGAATTATCTTTCCCAGCTGAGCTAGGCTAGATCTCAGAAAGTCATAAGGGTCCTAAACCTAGATAGGTCAGATTCTAGAACTATCCAATCTATCTGGAGCTCAGGTTGGCTGGCCTTATTTGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGGGGGGATACGGTATGAACCTTCCTAGATTTTCCAATTTCTGGAGGTCTAACCTTTTAGCCTCTGAAAGTTCAAAAATCCAGACGACACAACCATCTTTTTTTTCTAACACCACCTTATTTTTTGTCTTCGAAAGTTTTCTTTTGTATGCACTCACTCTTACTTAAAAATTCTCCGTTTTTTCGGAAAACTTGAAAATTCGAAAAAAAAAGAAGATATAGTAGAAGAGGTGGTTGGTGGGAAGAAGAAGAAGAAGAAGACGTCGCACTCTTTTCTCTTCTGGAAGTCGGCGTCTGACGACATCCTCACGAAAATCTGAGCAAAGTTAGAGAGAGCGCTGGAATCGAGGAGACGCCGACGCTAACTCAGTTTCCGCGAACAATCCCAATCAGTGCCGACGTCTTCTTAGGAAGAAGGCGAAAACTTCGAAACAGAATAAAACGTCGTCTTCCCTTCCCTCGCAACGTCTTCGAGAATATTC</canonical>
            <polymorphic>TTTCCAAGAATTATCTTTCCCAGCTGAGCTAGGCTAGATCTCAGAAAGTCATAAGGGTCCTAAACCTAGATAGGTCAGATTCTAGAACTATCCAATCTATCTGGAGCTCAGGTTGGCTGGCCTTATTTGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGMTTTTATTAGAAGGGATGGGAGGGGGGATACGGTATGAACCTTCCTAGATTTTCCAATTTCTGGAGGTCTAACCTTTTAGCCTCTGAAAGTTCAAAAATCCAGACGACACAACCATCTTTTTTTTCTAACACCACCTTATTTTTTGTCTTCGAAAGTTTTCTTTTGTATGCACTCACTCTTACTTAAAAATTCTCCGTTTTTTCGGAAAACTTGAAAATTCGAAAAAAAAAGAAGATATAGTAGAAGAGGTGGTTGGTGGGAAGAAGAAGAAGAAGAAGACGTCGCACTCTTTTCTCTTCTGGAAGTCGGCGTCTGACGACATCCTCACGAAAATCTGAGCAAAGTTAGAGAGAGCGCTGGAATCGAGGAGACGCCGACGCTAACTCAGTTTCCGCGAACAATCCCAATCAGTGCCGACGTCTTCTTAGGAAGAAGGCGAAAACTTCGAAACAGAATAAAACGTCGTCTTCCCTTCCCTCGCAACGTCTTCGAGAATATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTCTTATAGCAGCCTACTG</pcr_primer_p1>
		<pcr_primer_p2>AATTGGAAAATCTAGGAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>431</pcr_amplicon_size>
		<canonical_amplicon>TGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGGGGGGATACGGTATGAACCTTCCTAGATTTTCCAATT</canonical_amplicon>
		<polymorphic_amplicon>TGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGMTTTTATTAGAAGGGATGGGAGGGGGGATACGGTATGAACCTTCCTAGATTTTCCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16836</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>221304</contig_pos>
        <strand>+</strand>
        <context>TTGGAATTTA[A/T]AAATGCCGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCAGTGTTACATTGGCGATTTTCTTAGATACTTTCTGAAATTGGAATTTA</left_flank>
        <right_flank>AAATGCCGGATTTTCTGGAATAACTTACTTTGCATTCATTATCGTCCTCG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTCGCGATTTTTCAAAATAAAGTACAGTTAGGACCCACTTTTCAATTTTCTTCTGCATACTAGACGTCTGATGAGCATTCTGCGATCGTCGGGCATGCAACTTTCGATCGAGTGGCGGTTGGAACGGTGGACTGTGTGTTGGTGTCGTATCGCTGGCCTCGCCAACGTCTCCAACCCAGTCACTCTGCTCATCATCTGCTTCCTGTCCTTTGTTATCTTCAGAAGCCGATTCGTCGCTAGAAGAGATGTGCGACTCGAAACCATCACAATCCATGTATTCTGAAATATTCGTATACTTTTTTGGCTTTAGAGCTTGATTCTCACTTTCTGCTTTATTTCTTGGCGTTGGATCCACATCCATTTGCTGTCCCTTCTTCTTCGTTCGCTTCTTTCTTCGAACCGCTCGATCTTCAGCGGTCTGTGGAGATTCGGGTAGAGAATCCGATTCCAGTGTTACATTGGCGATTTTCTTAGATACTTTCTGAAATTGGAATTTAAAAATGCCGGATTTTCTGGAATAACTTACTTTGCATTCATTATCGTCCTCGTCCGGATCGCTGGTTTGGTCTTCGCGTTCGCTGAGGTCCATCTGGAAGAAAAGAATTTGTAGGGTGTTTGCTATTTGAACGGAAAAATGGAGGAGGAGAAGCTAACAAAACACGCAACGACACTCAAAATCAATAGATTGGTTCGGCTAGCTTGTTTTGATGAGCGCGAGGAGGAGGAGACGGCGCAGCGAAAACCACGAGACGCGCCGTTCGTTTCTAGCCGCCAGGGAGCGGAAACAATAACGAAAAAACAAAACATATCGGAATACATAACACGAAAATAAATAGTTTTTTTGAATTATGACTGGTGAGGAGGAGTGAAAAAAGGGATTCATGTCAAAAATTGGTTTATGAGATTTATAGAATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCACTTGGCCTACA</canonical>
            <polymorphic>TGGTCGCGATTTTTCAAAATAAAGTACAGTTAGGACCCACTTTTCAATTTTCTTCTGCATACTAGACGTCTGATGAGCATTCTGCGATCGTCGGGCATGCAACTTTCGATCGAGTGGCGGTTGGAACGGTGGACTGTGTGTTGGTGTCGTATCGCTGGCCTCGCCAACGTCTCCAACCCAGTCACTCTGCTCATCATCTGCTTCCTGTCCTTTGTTATCTTCAGAAGCCGATTCGTCGCTAGAAGAGATGTGCGACTCGAAACCATCACAATCCATGTATTCTGAAATATTCGTATACTTTTTTGGCTTTAGAGCTTGATTCTCACTTTCTGCTTTATTTCTTGGCGTTGGATCCACATCCATTTGCTGTCCCTTCTTCTTCGTTCGCTTCTTTCTTCGAACCGCTCGATCTTCAGCGGTCTGTGGAGATTCGGGTAGAGAATCCGATTCCAGTGTTACATTGGCGATTTTCTTAGATACTTTCTGAAATTGGAATTTAWAAATGCCGGATTTTCTGGAATAACTTACTTTGCATTCATTATCGTCCTCGTCCGGATCGCTGGTTTGGTCTTCGCGTTCGCTGAGGTCCATCTGGAAGAAAAGAATTTGTAGGGTGTTTGCTATTTGAACGGAAAAATGGAGGAGGAGAAGCTAACAAAACACGCAACGACACTCAAAATCAATAGATTGGTTCGGCTAGCTTGTTTTGATGAGCGCGAGGAGGAGGAGACGGCGCAGCGAAAACCACGAGACGCGCCGTTCGTTTCTAGCCGCCAGGGAGCGGAAACAATAACGAAAAAACAAAACATATCGGAATACATAACACGAAAATAAATAGTTTTTTTGAATTATGACTGGTGAGGAGGAGTGAAAAAAGGGATTCATGTCAAAAATTGGTTTATGAGATTTATAGAATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCACTTGGCCTACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTGCTGTCCCTTCTTCTT</pcr_primer_p1>
		<pcr_primer_p2>TACAAATTCTTTTCTTCCAGATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTGCTGTCCCTTCTTCTTCGTTCGCTTCTTTCTTCGAACCGCTCGATCTTCAGCGGTCTGTGGAGATTCGGGTAGAGAATCCGATTCCAGTGTTACATTGGCGATTTTCTTAGATACTTTCTGAAATTGGAATTTAAAAATGCCGGATTTTCTGGAATAACTTACTTTGCATTCATTATCGTCCTCGTCCGGATCGCTGGTTTGGTCTTCGCGTTCGCTGAGGTCCATCTGGAAGAAAAGAATTTGTA</canonical_amplicon>
		<polymorphic_amplicon>ATTTGCTGTCCCTTCTTCTTCGTTCGCTTCTTTCTTCGAACCGCTCGATCTTCAGCGGTCTGTGGAGATTCGGGTAGAGAATCCGATTCCAGTGTTACATTGGCGATTTTCTTAGATACTTTCTGAAATTGGAATTTAWAAATGCCGGATTTTCTGGAATAACTTACTTTGCATTCATTATCGTCCTCGTCCGGATCGCTGGTTTGGTCTTCGCGTTCGCTGAGGTCCATCTGGAAGAAAAGAATTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16837</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>221725</contig_pos>
        <strand>+</strand>
        <context>TAGAATTCAC[A/G]GTTGCTGCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAAGGGATTCATGTCAAAAATTGGTTTATGAGATTTATAGAATTCAC</left_flank>
        <right_flank>GTTGCTGCATATTGCAATGCAAGCAGTCCCATTCACAGTTGCTGCATATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGGAGATTCGGGTAGAGAATCCGATTCCAGTGTTACATTGGCGATTTTCTTAGATACTTTCTGAAATTGGAATTTAAAAATGCCGGATTTTCTGGAATAACTTACTTTGCATTCATTATCGTCCTCGTCCGGATCGCTGGTTTGGTCTTCGCGTTCGCTGAGGTCCATCTGGAAGAAAAGAATTTGTAGGGTGTTTGCTATTTGAACGGAAAAATGGAGGAGGAGAAGCTAACAAAACACGCAACGACACTCAAAATCAATAGATTGGTTCGGCTAGCTTGTTTTGATGAGCGCGAGGAGGAGGAGACGGCGCAGCGAAAACCACGAGACGCGCCGTTCGTTTCTAGCCGCCAGGGAGCGGAAACAATAACGAAAAAACAAAACATATCGGAATACATAACACGAAAATAAATAGTTTTTTTGAATTATGACTGGTGAGGAGGAGTGAAAAAAGGGATTCATGTCAAAAATTGGTTTATGAGATTTATAGAATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCACTTGGCCTACAGGACTCTAGTCGGCCCGCCTGGTCATTTTACTTTTTTATTTGTACAGGTCCCATTTCTTGCCAAATTATCTATCGATTTCCCCCCATGCATTGCAAATAAATATATTATTATTATTATTATTACAGTGGGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAATTTGATAACAAAGAAAGCGCTTTCAAAGACGAAACAATCAACAAATTAGTTTATTATTAATTTGGGACCTTCAGATTCCCTTTTTCGTTGTTTTTCCTGAAGGATCGCTTTCTAGCATGAAATTCATGTTGAAATAATTGAAAATATGGTAAAAACAACCGGAAAAACTGAAATTTGCATCAAAAAATAAAACAATATTGTTTTGAAAATCTCAGTTTACCGCAAACACCGCCCACTCATAGTGCACT</canonical>
            <polymorphic>TGTGGAGATTCGGGTAGAGAATCCGATTCCAGTGTTACATTGGCGATTTTCTTAGATACTTTCTGAAATTGGAATTTAAAAATGCCGGATTTTCTGGAATAACTTACTTTGCATTCATTATCGTCCTCGTCCGGATCGCTGGTTTGGTCTTCGCGTTCGCTGAGGTCCATCTGGAAGAAAAGAATTTGTAGGGTGTTTGCTATTTGAACGGAAAAATGGAGGAGGAGAAGCTAACAAAACACGCAACGACACTCAAAATCAATAGATTGGTTCGGCTAGCTTGTTTTGATGAGCGCGAGGAGGAGGAGACGGCGCAGCGAAAACCACGAGACGCGCCGTTCGTTTCTAGCCGCCAGGGAGCGGAAACAATAACGAAAAAACAAAACATATCGGAATACATAACACGAAAATAAATAGTTTTTTTGAATTATGACTGGTGAGGAGGAGTGAAAAAAGGGATTCATGTCAAAAATTGGTTTATGAGATTTATAGAATTCACRGTTGCTGCATATTGCAATGCAAGCAGTCCCATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCACTTGGCCTACAGGACTCTAGTCGGCCCGCCTGGTCATTTTACTTTTTTATTTGTACAGGTCCCATTTCTTGCCAAATTATCTATCGATTTCCCCCCATGCATTGCAAATAAATATATTATTATTATTATTATTACAGTGGGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAATTTGATAACAAAGAAAGCGCTTTCAAAGACGAAACAATCAACAAATTAGTTTATTATTAATTTGGGACCTTCAGATTCCCTTTTTCGTTGTTTTTCCTGAAGGATCGCTTTCTAGCATGAAATTCATGTTGAAATAATTGAAAATATGGTAAAAACAACCGGAAAAACTGAAATTTGCATCAAAAAATAAAACAATATTGTTTTGAAAATCTCAGTTTACCGCAAACACCGCCCACTCATAGTGCACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAGNNNCTG</site>
                <isoschizomers>
                    <enzyme>AlwNI</enzyme>
                    <enzyme>CaiI</enzyme>
                </isoschizomers>
                <canonical_bands>504 459 37</canonical_bands>
                <polymorphic_bands>541 459</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACAAAACATATCGGAATACA</pcr_primer_p1>
		<pcr_primer_p2>CAATATGCAGCAACTGTGAA</pcr_primer_p2>
		<pcr_amplicon_size>175</pcr_amplicon_size>
		<canonical_amplicon>AAAACAAAACATATCGGAATACATAACACGAAAATAAATAGTTTTTTTGAATTATGACTGGTGAGGAGGAGTGAAAAAAGGGATTCATGTCAAAAATTGGTTTATGAGATTTATAGAATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCATTCACAGTTGCTGCATATTG</canonical_amplicon>
		<polymorphic_amplicon>AAAACAAAACATATCGGAATACATAACACGAAAATAAATAGTTTTTTTGAATTATGACTGGTGAGGAGGAGTGAAAAAAGGGATTCATGTCAAAAATTGGTTTATGAGATTTATAGAATTCACRGTTGCTGCATATTGCAATGCAAGCAGTCCCATTCACAGTTGCTGCATATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16838</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>221704</contig_pos>
        <strand>+</strand>
        <context>AAAATTGGTT[A/T]ATGAGATTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATGACTGGTGAGGAGGAGTGAAAAAAGGGATTCATGTCAAAAATTGGTT</left_flank>
        <right_flank>ATGAGATTTATAGAATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCGCTCGATCTTCAGCGGTCTGTGGAGATTCGGGTAGAGAATCCGATTCCAGTGTTACATTGGCGATTTTCTTAGATACTTTCTGAAATTGGAATTTAAAAATGCCGGATTTTCTGGAATAACTTACTTTGCATTCATTATCGTCCTCGTCCGGATCGCTGGTTTGGTCTTCGCGTTCGCTGAGGTCCATCTGGAAGAAAAGAATTTGTAGGGTGTTTGCTATTTGAACGGAAAAATGGAGGAGGAGAAGCTAACAAAACACGCAACGACACTCAAAATCAATAGATTGGTTCGGCTAGCTTGTTTTGATGAGCGCGAGGAGGAGGAGACGGCGCAGCGAAAACCACGAGACGCGCCGTTCGTTTCTAGCCGCCAGGGAGCGGAAACAATAACGAAAAAACAAAACATATCGGAATACATAACACGAAAATAAATAGTTTTTTTGAATTATGACTGGTGAGGAGGAGTGAAAAAAGGGATTCATGTCAAAAATTGGTTTATGAGATTTATAGAATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCACTTGGCCTACAGGACTCTAGTCGGCCCGCCTGGTCATTTTACTTTTTTATTTGTACAGGTCCCATTTCTTGCCAAATTATCTATCGATTTCCCCCCATGCATTGCAAATAAATATATTATTATTATTATTATTACAGTGGGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAATTTGATAACAAAGAAAGCGCTTTCAAAGACGAAACAATCAACAAATTAGTTTATTATTAATTTGGGACCTTCAGATTCCCTTTTTCGTTGTTTTTCCTGAAGGATCGCTTTCTAGCATGAAATTCATGTTGAAATAATTGAAAATATGGTAAAAACAACCGGAAAAACTGAAATTTGCATCAAAAAATAAAACAATATTGTTTTGAAAATCTCAGTTTACCGCAAAC</canonical>
            <polymorphic>ACCGCTCGATCTTCAGCGGTCTGTGGAGATTCGGGTAGAGAATCCGATTCCAGTGTTACATTGGCGATTTTCTTAGATACTTTCTGAAATTGGAATTTAAAAATGCCGGATTTTCTGGAATAACTTACTTTGCATTCATTATCGTCCTCGTCCGGATCGCTGGTTTGGTCTTCGCGTTCGCTGAGGTCCATCTGGAAGAAAAGAATTTGTAGGGTGTTTGCTATTTGAACGGAAAAATGGAGGAGGAGAAGCTAACAAAACACGCAACGACACTCAAAATCAATAGATTGGTTCGGCTAGCTTGTTTTGATGAGCGCGAGGAGGAGGAGACGGCGCAGCGAAAACCACGAGACGCGCCGTTCGTTTCTAGCCGCCAGGGAGCGGAAACAATAACGAAAAAACAAAACATATCGGAATACATAACACGAAAATAAATAGTTTTTTTGAATTATGACTGGTGAGGAGGAGTGAAAAAAGGGATTCATGTCAAAAATTGGTTWATGAGATTTATAGAATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCACTTGGCCTACAGGACTCTAGTCGGCCCGCCTGGTCATTTTACTTTTTTATTTGTACAGGTCCCATTTCTTGCCAAATTATCTATCGATTTCCCCCCATGCATTGCAAATAAATATATTATTATTATTATTATTACAGTGGGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAATTTGATAACAAAGAAAGCGCTTTCAAAGACGAAACAATCAACAAATTAGTTTATTATTAATTTGGGACCTTCAGATTCCCTTTTTCGTTGTTTTTCCTGAAGGATCGCTTTCTAGCATGAAATTCATGTTGAAATAATTGAAAATATGGTAAAAACAACCGGAAAAACTGAAATTTGCATCAAAAAATAAAACAATATTGTTTTGAAAATCTCAGTTTACCGCAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACAAAACATATCGGAATACA</pcr_primer_p1>
		<pcr_primer_p2>CAATATGCAGCAACTGTGAA</pcr_primer_p2>
		<pcr_amplicon_size>175</pcr_amplicon_size>
		<canonical_amplicon>AAAACAAAACATATCGGAATACATAACACGAAAATAAATAGTTTTTTTGAATTATGACTGGTGAGGAGGAGTGAAAAAAGGGATTCATGTCAAAAATTGGTTTATGAGATTTATAGAATTCACAGTTGCTGCATATTG</canonical_amplicon>
		<polymorphic_amplicon>AAAACAAAACATATCGGAATACATAACACGAAAATAAATAGTTTTTTTGAATTATGACTGGTGAGGAGGAGTGAAAAAAGGGATTCATGTCAAAAATTGGTTWATGAGATTTATAGAATTCACAGTTGCTGCATATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16839</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>222217</contig_pos>
        <strand>+</strand>
        <context>CGCCCACTCA[A/T]AGTGCACTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAACAATATTGTTTTGAAAATCTCAGTTTACCGCAAACACCGCCCACTCA</left_flank>
        <right_flank>AGTGCACTATTTCGCAACACTTTCCAAAAAGTCCGCAAGTTTGGGTGGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCACTTGGCCTACAGGACTCTAGTCGGCCCGCCTGGTCATTTTACTTTTTTATTTGTACAGGTCCCATTTCTTGCCAAATTATCTATCGATTTCCCCCCATGCATTGCAAATAAATATATTATTATTATTATTATTACAGTGGGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAATTTGATAACAAAGAAAGCGCTTTCAAAGACGAAACAATCAACAAATTAGTTTATTATTAATTTGGGACCTTCAGATTCCCTTTTTCGTTGTTTTTCCTGAAGGATCGCTTTCTAGCATGAAATTCATGTTGAAATAATTGAAAATATGGTAAAAACAACCGGAAAAACTGAAATTTGCATCAAAAAATAAAACAATATTGTTTTGAAAATCTCAGTTTACCGCAAACACCGCCCACTCATAGTGCACTATTTCGCAACACTTTCCAAAAAGTCCGCAAGTTTGGGTGGCGGTATTTGCAGACCTAGTAGAAAATATATGTTTTTTTTCGCAAATAAATATTTTGTTTCCAAAAAATACATGTTCTAGGTTCCGAAAATGTATAAATTGACACAAGAGGAGTATGAAAAGCACCGAGGCGCACTCTTCAGACATTTTTTGCCAGATGAGCCGGGGACAAGCAGAGATGGTTGAAAAGAAACTGAACAAAATAAATATTGAAAAATGTTGGAAATTCAGGAAACCGGGGAGGAATCAAGACAGCGGCGCAAGAATTGATAGAAACGAAAAGGAAATCTATTGAGAGCTATTTCAGTCGATTTTTTAGGTGAATGAAGACAACAAAAGTGAATTTCACACTAGTTTATCAAGTTTAGAGAGCTAAAAGGAGAAACCAACGATCACTTCGACTTGAAAAGAGTGAAATTCGATGATTTGGTATTCCACAAGATACTGGAGGATT</canonical>
            <polymorphic>AATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCACTTGGCCTACAGGACTCTAGTCGGCCCGCCTGGTCATTTTACTTTTTTATTTGTACAGGTCCCATTTCTTGCCAAATTATCTATCGATTTCCCCCCATGCATTGCAAATAAATATATTATTATTATTATTATTACAGTGGGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAATTTGATAACAAAGAAAGCGCTTTCAAAGACGAAACAATCAACAAATTAGTTTATTATTAATTTGGGACCTTCAGATTCCCTTTTTCGTTGTTTTTCCTGAAGGATCGCTTTCTAGCATGAAATTCATGTTGAAATAATTGAAAATATGGTAAAAACAACCGGAAAAACTGAAATTTGCATCAAAAAATAAAACAATATTGTTTTGAAAATCTCAGTTTACCGCAAACACCGCCCACTCAWAGTGCACTATTTCGCAACACTTTCCAAAAAGTCCGCAAGTTTGGGTGGCGGTATTTGCAGACCTAGTAGAAAATATATGTTTTTTTTCGCAAATAAATATTTTGTTTCCAAAAAATACATGTTCTAGGTTCCGAAAATGTATAAATTGACACAAGAGGAGTATGAAAAGCACCGAGGCGCACTCTTCAGACATTTTTTGCCAGATGAGCCGGGGACAAGCAGAGATGGTTGAAAAGAAACTGAACAAAATAAATATTGAAAAATGTTGGAAATTCAGGAAACCGGGGAGGAATCAAGACAGCGGCGCAAGAATTGATAGAAACGAAAAGGAAATCTATTGAGAGCTATTTCAGTCGATTTTTTAGGTGAATGAAGACAACAAAAGTGAATTTCACACTAGTTTATCAAGTTTAGAGAGCTAAAAGGAGAAACCAACGATCACTTCGACTTGAAAAGAGTGAAATTCGATGATTTGGTATTCCACAAGATACTGGAGGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACTGAAATTTGCATCA</pcr_primer_p1>
		<pcr_primer_p2>TTTCATACTCCTCTTGTGTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACTGAAATTTGCATCAAAAAATAAAACAATATTGTTTTGAAAATCTCAGTTTACCGCAAACACCGCCCACTCATAGTGCACTATTTCGCAACACTTTCCAAAAAGTCCGCAAGTTTGGGTGGCGGTATTTGCAGACCTAGTAGAAAATATATGTTTTTTTTCGCAAATAAATATTTTGTTTCCAAAAAATACATGTTCTAGGTTCCGAAAATGTATAAATTGACACAAGAGGAGTATGAAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACTGAAATTTGCATCAAAAAATAAAACAATATTGTTTTGAAAATCTCAGTTTACCGCAAACACCGCCCACTCAWAGTGCACTATTTCGCAACACTTTCCAAAAAGTCCGCAAGTTTGGGTGGCGGTATTTGCAGACCTAGTAGAAAATATATGTTTTTTTTCGCAAATAAATATTTTGTTTCCAAAAAATACATGTTCTAGGTTCCGAAAATGTATAAATTGACACAAGAGGAGTATGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16842</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>222027</contig_pos>
        <strand>+</strand>
        <context>AACAAATTAG[C/T]TTATTATTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTGATAACAAAGAAAGCGCTTTCAAAGACGAAACAATCAACAAATTAG</left_flank>
        <right_flank>TTATTATTAATTTGGGACCTTCAGATTCCCTTTTTCGTTGTTTTTCCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGAGACGGCGCAGCGAAAACCACGAGACGCGCCGTTCGTTTCTAGCCGCCAGGGAGCGGAAACAATAACGAAAAAACAAAACATATCGGAATACATAACACGAAAATAAATAGTTTTTTTGAATTATGACTGGTGAGGAGGAGTGAAAAAAGGGATTCATGTCAAAAATTGGTTTATGAGATTTATAGAATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCACTTGGCCTACAGGACTCTAGTCGGCCCGCCTGGTCATTTTACTTTTTTATTTGTACAGGTCCCATTTCTTGCCAAATTATCTATCGATTTCCCCCCATGCATTGCAAATAAATATATTATTATTATTATTATTACAGTGGGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAATTTGATAACAAAGAAAGCGCTTTCAAAGACGAAACAATCAACAAATTAGTTTATTATTAATTTGGGACCTTCAGATTCCCTTTTTCGTTGTTTTTCCTGAAGGATCGCTTTCTAGCATGAAATTCATGTTGAAATAATTGAAAATATGGTAAAAACAACCGGAAAAACTGAAATTTGCATCAAAAAATAAAACAATATTGTTTTGAAAATCTCAGTTTACCGCAAACACCGCCCACTCATAGTGCACTATTTCGCAACACTTTCCAAAAAGTCCGCAAGTTTGGGTGGCGGTATTTGCAGACCTAGTAGAAAATATATGTTTTTTTTCGCAAATAAATATTTTGTTTCCAAAAAATACATGTTCTAGGTTCCGAAAATGTATAAATTGACACAAGAGGAGTATGAAAAGCACCGAGGCGCACTCTTCAGACATTTTTTGCCAGATGAGCCGGGGACAAGCAGAGATGGTTGAAAAGAAACTGAACAAAATAAATATTGAAAAATGTTGGAAATTCAGGAAACCGGGGAGGAATCAAGACAGCGGCGCAAG</canonical>
            <polymorphic>GAGGAGACGGCGCAGCGAAAACCACGAGACGCGCCGTTCGTTTCTAGCCGCCAGGGAGCGGAAACAATAACGAAAAAACAAAACATATCGGAATACATAACACGAAAATAAATAGTTTTTTTGAATTATGACTGGTGAGGAGGAGTGAAAAAAGGGATTCATGTCAAAAATTGGTTTATGAGATTTATAGAATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCACTTGGCCTACAGGACTCTAGTCGGCCCGCCTGGTCATTTTACTTTTTTATTTGTACAGGTCCCATTTCTTGCCAAATTATCTATCGATTTCCCCCCATGCATTGCAAATAAATATATTATTATTATTATTATTACAGTGGGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAATTTGATAACAAAGAAAGCGCTTTCAAAGACGAAACAATCAACAAATTAGYTTATTATTAATTTGGGACCTTCAGATTCCCTTTTTCGTTGTTTTTCCTGAAGGATCGCTTTCTAGCATGAAATTCATGTTGAAATAATTGAAAATATGGTAAAAACAACCGGAAAAACTGAAATTTGCATCAAAAAATAAAACAATATTGTTTTGAAAATCTCAGTTTACCGCAAACACCGCCCACTCATAGTGCACTATTTCGCAACACTTTCCAAAAAGTCCGCAAGTTTGGGTGGCGGTATTTGCAGACCTAGTAGAAAATATATGTTTTTTTTCGCAAATAAATATTTTGTTTCCAAAAAATACATGTTCTAGGTTCCGAAAATGTATAAATTGACACAAGAGGAGTATGAAAAGCACCGAGGCGCACTCTTCAGACATTTTTTGCCAGATGAGCCGGGGACAAGCAGAGATGGTTGAAAAGAAACTGAACAAAATAAATATTGAAAAATGTTGGAAATTCAGGAAACCGGGGAGGAATCAAGACAGCGGCGCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGGACTCATGAAACAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGATGCAAATTTCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>GGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAATTTGATAACAAAGAAAGCGCTTTCAAAGACGAAACAATCAACAAATTAGTTTATTATTAATTTGGGACCTTCAGATTCCCTTTTTCGTTGTTTTTCCTGAAGGATCGCTTTCTAGCATGAAATTCATGTTGAAATAATTGAAAATATGGTAAAAACAACCGGAAAAACTGAAATTTGCATCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAATTTGATAACAAAGAAAGCGCTTTCAAAGACGAAACAATCAACAAATTAGYTTATTATTAATTTGGGACCTTCAGATTCCCTTTTTCGTTGTTTTTCCTGAAGGATCGCTTTCTAGCATGAAATTCATGTTGAAATAATTGAAAATATGGTAAAAACAACCGGAAAAACTGAAATTTGCATCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16843</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>222011</contig_pos>
        <strand>+</strand>
        <context>CAAAGACGAA[A/G]CAATCAACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCCGTATTATATGAATTTGATAACAAAGAAAGCGCTTTCAAAGACGAA</left_flank>
        <right_flank>CAATCAACAAATTAGTTTATTATTAATTTGGGACCTTCAGATTCCCTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATGAGCGCGAGGAGGAGGAGACGGCGCAGCGAAAACCACGAGACGCGCCGTTCGTTTCTAGCCGCCAGGGAGCGGAAACAATAACGAAAAAACAAAACATATCGGAATACATAACACGAAAATAAATAGTTTTTTTGAATTATGACTGGTGAGGAGGAGTGAAAAAAGGGATTCATGTCAAAAATTGGTTTATGAGATTTATAGAATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCACTTGGCCTACAGGACTCTAGTCGGCCCGCCTGGTCATTTTACTTTTTTATTTGTACAGGTCCCATTTCTTGCCAAATTATCTATCGATTTCCCCCCATGCATTGCAAATAAATATATTATTATTATTATTATTACAGTGGGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAATTTGATAACAAAGAAAGCGCTTTCAAAGACGAAACAATCAACAAATTAGTTTATTATTAATTTGGGACCTTCAGATTCCCTTTTTCGTTGTTTTTCCTGAAGGATCGCTTTCTAGCATGAAATTCATGTTGAAATAATTGAAAATATGGTAAAAACAACCGGAAAAACTGAAATTTGCATCAAAAAATAAAACAATATTGTTTTGAAAATCTCAGTTTACCGCAAACACCGCCCACTCATAGTGCACTATTTCGCAACACTTTCCAAAAAGTCCGCAAGTTTGGGTGGCGGTATTTGCAGACCTAGTAGAAAATATATGTTTTTTTTCGCAAATAAATATTTTGTTTCCAAAAAATACATGTTCTAGGTTCCGAAAATGTATAAATTGACACAAGAGGAGTATGAAAAGCACCGAGGCGCACTCTTCAGACATTTTTTGCCAGATGAGCCGGGGACAAGCAGAGATGGTTGAAAAGAAACTGAACAAAATAAATATTGAAAAATGTTGGAAATTCAGGAAACCGGGGAGGAATC</canonical>
            <polymorphic>TGATGAGCGCGAGGAGGAGGAGACGGCGCAGCGAAAACCACGAGACGCGCCGTTCGTTTCTAGCCGCCAGGGAGCGGAAACAATAACGAAAAAACAAAACATATCGGAATACATAACACGAAAATAAATAGTTTTTTTGAATTATGACTGGTGAGGAGGAGTGAAAAAAGGGATTCATGTCAAAAATTGGTTTATGAGATTTATAGAATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCACTTGGCCTACAGGACTCTAGTCGGCCCGCCTGGTCATTTTACTTTTTTATTTGTACAGGTCCCATTTCTTGCCAAATTATCTATCGATTTCCCCCCATGCATTGCAAATAAATATATTATTATTATTATTATTACAGTGGGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAATTTGATAACAAAGAAAGCGCTTTCAAAGACGAARCAATCAACAAATTAGTTTATTATTAATTTGGGACCTTCAGATTCCCTTTTTCGTTGTTTTTCCTGAAGGATCGCTTTCTAGCATGAAATTCATGTTGAAATAATTGAAAATATGGTAAAAACAACCGGAAAAACTGAAATTTGCATCAAAAAATAAAACAATATTGTTTTGAAAATCTCAGTTTACCGCAAACACCGCCCACTCATAGTGCACTATTTCGCAACACTTTCCAAAAAGTCCGCAAGTTTGGGTGGCGGTATTTGCAGACCTAGTAGAAAATATATGTTTTTTTTCGCAAATAAATATTTTGTTTCCAAAAAATACATGTTCTAGGTTCCGAAAATGTATAAATTGACACAAGAGGAGTATGAAAAGCACCGAGGCGCACTCTTCAGACATTTTTTGCCAGATGAGCCGGGGACAAGCAGAGATGGTTGAAAAGAAACTGAACAAAATAAATATTGAAAAATGTTGGAAATTCAGGAAACCGGGGAGGAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGGACTCATGAAACAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGATGCAAATTTCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>GGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAATTTGATAACAAAGAAAGCGCTTTCAAAGACGAAACAATCAACAAATTAGTTTATTATTAATTTGGGACCTTCAGATTCCCTTTTTCGTTGTTTTTCCTGAAGGATCGCTTTCTAGCATGAAATTCATGTTGAAATAATTGAAAATATGGTAAAAACAACCGGAAAAACTGAAATTTGCATCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAATTTGATAACAAAGAAAGCGCTTTCAAAGACGAARCAATCAACAAATTAGTTTATTATTAATTTGGGACCTTCAGATTCCCTTTTTCGTTGTTTTTCCTGAAGGATCGCTTTCTAGCATGAAATTCATGTTGAAATAATTGAAAATATGGTAAAAACAACCGGAAAAACTGAAATTTGCATCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16844</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>221981</contig_pos>
        <strand>+</strand>
        <context>ATATGAATTT[G/T]ATAACAAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGGGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAATTT</left_flank>
        <right_flank>ATAACAAAGAAAGCGCTTTCAAAGACGAAACAATCAACAAATTAGTTTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCAATAGATTGGTTCGGCTAGCTTGTTTTGATGAGCGCGAGGAGGAGGAGACGGCGCAGCGAAAACCACGAGACGCGCCGTTCGTTTCTAGCCGCCAGGGAGCGGAAACAATAACGAAAAAACAAAACATATCGGAATACATAACACGAAAATAAATAGTTTTTTTGAATTATGACTGGTGAGGAGGAGTGAAAAAAGGGATTCATGTCAAAAATTGGTTTATGAGATTTATAGAATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCACTTGGCCTACAGGACTCTAGTCGGCCCGCCTGGTCATTTTACTTTTTTATTTGTACAGGTCCCATTTCTTGCCAAATTATCTATCGATTTCCCCCCATGCATTGCAAATAAATATATTATTATTATTATTATTACAGTGGGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAATTTGATAACAAAGAAAGCGCTTTCAAAGACGAAACAATCAACAAATTAGTTTATTATTAATTTGGGACCTTCAGATTCCCTTTTTCGTTGTTTTTCCTGAAGGATCGCTTTCTAGCATGAAATTCATGTTGAAATAATTGAAAATATGGTAAAAACAACCGGAAAAACTGAAATTTGCATCAAAAAATAAAACAATATTGTTTTGAAAATCTCAGTTTACCGCAAACACCGCCCACTCATAGTGCACTATTTCGCAACACTTTCCAAAAAGTCCGCAAGTTTGGGTGGCGGTATTTGCAGACCTAGTAGAAAATATATGTTTTTTTTCGCAAATAAATATTTTGTTTCCAAAAAATACATGTTCTAGGTTCCGAAAATGTATAAATTGACACAAGAGGAGTATGAAAAGCACCGAGGCGCACTCTTCAGACATTTTTTGCCAGATGAGCCGGGGACAAGCAGAGATGGTTGAAAAGAAACTGAACAAAATAAATATTGAAAAAT</canonical>
            <polymorphic>AATCAATAGATTGGTTCGGCTAGCTTGTTTTGATGAGCGCGAGGAGGAGGAGACGGCGCAGCGAAAACCACGAGACGCGCCGTTCGTTTCTAGCCGCCAGGGAGCGGAAACAATAACGAAAAAACAAAACATATCGGAATACATAACACGAAAATAAATAGTTTTTTTGAATTATGACTGGTGAGGAGGAGTGAAAAAAGGGATTCATGTCAAAAATTGGTTTATGAGATTTATAGAATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCACTTGGCCTACAGGACTCTAGTCGGCCCGCCTGGTCATTTTACTTTTTTATTTGTACAGGTCCCATTTCTTGCCAAATTATCTATCGATTTCCCCCCATGCATTGCAAATAAATATATTATTATTATTATTATTACAGTGGGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAATTTKATAACAAAGAAAGCGCTTTCAAAGACGAAACAATCAACAAATTAGTTTATTATTAATTTGGGACCTTCAGATTCCCTTTTTCGTTGTTTTTCCTGAAGGATCGCTTTCTAGCATGAAATTCATGTTGAAATAATTGAAAATATGGTAAAAACAACCGGAAAAACTGAAATTTGCATCAAAAAATAAAACAATATTGTTTTGAAAATCTCAGTTTACCGCAAACACCGCCCACTCATAGTGCACTATTTCGCAACACTTTCCAAAAAGTCCGCAAGTTTGGGTGGCGGTATTTGCAGACCTAGTAGAAAATATATGTTTTTTTTCGCAAATAAATATTTTGTTTCCAAAAAATACATGTTCTAGGTTCCGAAAATGTATAAATTGACACAAGAGGAGTATGAAAAGCACCGAGGCGCACTCTTCAGACATTTTTTGCCAGATGAGCCGGGGACAAGCAGAGATGGTTGAAAAGAAACTGAACAAAATAAATATTGAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGATTCATGTCAAAAATTG</pcr_primer_p1>
		<pcr_primer_p2>GAATCTGAAGGTCCCAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>GGGATTCATGTCAAAAATTGGTTTATGAGATTTATAGAATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCACTTGGCCTACAGGACTCTAGTCGGCCCGCCTGGTCATTTTACTTTTTTATTTGTACAGGTCCCATTTCTTGCCAAATTATCTATCGATTTCCCCCCATGCATTGCAAATAAATATATTATTATTATTATTATTACAGTGGGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAATTTGATAACAAAGAAAGCGCTTTCAAAGACGAAACAATCAACAAATTAGTTTATTATTAATTTGGGACCTTCAGATTC</canonical_amplicon>
		<polymorphic_amplicon>GGGATTCATGTCAAAAATTGGTTTATGAGATTTATAGAATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCACTTGGCCTACAGGACTCTAGTCGGCCCGCCTGGTCATTTTACTTTTTTATTTGTACAGGTCCCATTTCTTGCCAAATTATCTATCGATTTCCCCCCATGCATTGCAAATAAATATATTATTATTATTATTATTACAGTGGGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAATTTKATAACAAAGAAAGCGCTTTCAAAGACGAAACAATCAACAAATTAGTTTATTATTAATTTGGGACCTTCAGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16848</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>235100</contig_pos>
        <strand></strand>
        <context>TAAATTTACC[A/T]ACTTCCCGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGCAAAATTATTATATACAGGACAGAACAAACTTTTAAATAAATTTACC</left_flank>
        <right_flank>ACTTCCCGTTTTACTGAAATTGCGTTTCGTCCGTTTTTGAGCCGCCGATC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAACAATAATTTTCAATTAGTTCTGGTTTCTTGATTTTGATGAAATTGCATTTCGTCCGTTTTTGAGCCGCCAATCATCCGTTTCAAATAGTTAACTTTTTGTGGACCACCTGTACAACGATTTTGAAGTTCCTGGGGCACAAGGGGTACTAAACCCTCAATTTAGATATACAAAACAATTGAAAAAGTTAAATTTAGTTCTTCAGTACCTATCAGATTTATGTCACTGGCTGGTAATTAGCACATCATGTCAGAAACCATTTTTCTTTGAGTAAACCGACCTAATTGCTCTCTTTAATTGATTTTTTTTCATTCTCTTACCCTGTCTTTTCCTGTCATATTGGTCCGACAGCGTGAGCCGCTCATCGTCCGTTTTTAACAATTTCAAACTGAATACGTCCGAATAGTGGTAGATACATATTTAATTGTGTTATTTATCACTTTTATTAGCAAAATTATTATATACAGGACAGAACAAACTTTTAAATAAATTTACCAACTTCCCGTTTTACTGAAATTGCGTTTCGTCCGTTTTTGAGCCGCCGATCATCCGGTTTTCCTAACTTTTGACCAAGTTCTGCTTTTTTAAACTACATTAAATTTTATTGTATCAGGCTAAAAAATTTAAACCCCACTGAACAAAAATATAGAGCTTCGATTTCGTAGTTGACAACTTTTTCGTAATAATGCATCCAACTGGAATATCTTTTGTCTGGTACAGTAGGTCAGCTACCCATTTTTGGAAAGCGGACCAGCGACATGAGATGCATTGCTTGAAAGCAACCAAATGCCAAAACTTCCTAAAAATGGTACTGTAGGTTAGATACCGATTCTTAGTATGCAGAAAATTTTTGTTCTCTATGATACCTGCTGGGCAGCTGCCCTCACCCATTTATGACTGACAAAAAAGACCAATTAGCCCCTCCTACCTTGCCACGTCACAACTACCCCTGCCTTCTTCTTTTTCCTATGTCTTATCGTTGCTTCGTTCGCTATTA</canonical>
            <polymorphic>ATCAACAATAATTTTCAATTAGTTCTGGTTTCTTGATTTTGATGAAATTGCATTTCGTCCGTTTTTGAGCCGCCAATCATCCGTTTCAAATAGTTAACTTTTTGTGGACCACCTGTACAACGATTTTGAAGTTCCTGGGGCACAAGGGGTACTAAACCCTCAATTTAGATATACAAAACAATTGAAAAAGTTAAATTTAGTTCTTCAGTACCTATCAGATTTATGTCACTGGCTGGTAATTAGCACATCATGTCAGAAACCATTTTTCTTTGAGTAAACCGACCTAATTGCTCTCTTTAATTGATTTTTTTTCATTCTCTTACCCTGTCTTTTCCTGTCATATTGGTCCGACAGCGTGAGCCGCTCATCGTCCGTTTTTAACAATTTCAAACTGAATACGTCCGAATAGTGGTAGATACATATTTAATTGTGTTATTTATCACTTTTATTAGCAAAATTATTATATACAGGACAGAACAAACTTTTAAATAAATTTACCWACTTCCCGTTTTACTGAAATTGCGTTTCGTCCGTTTTTGAGCCGCCGATCATCCGGTTTTCCTAACTTTTGACCAAGTTCTGCTTTTTTAAACTACATTAAATTTTATTGTATCAGGCTAAAAAATTTAAACCCCACTGAACAAAAATATAGAGCTTCGATTTCGTAGTTGACAACTTTTTCGTAATAATGCATCCAACTGGAATATCTTTTGTCTGGTACAGTAGGTCAGCTACCCATTTTTGGAAAGCGGACCAGCGACATGAGATGCATTGCTTGAAAGCAACCAAATGCCAAAACTTCCTAAAAATGGTACTGTAGGTTAGATACCGATTCTTAGTATGCAGAAAATTTTTGTTCTCTATGATACCTGCTGGGCAGCTGCCCTCACCCATTTATGACTGACAAAAAAGACCAATTAGCCCCTCCTACCTTGCCACGTCACAACTACCCCTGCCTTCTTCTTTTTCCTATGTCTTATCGTTGCTTCGTTCGCTATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGTTATTTATCACTTTTATTAGCA</pcr_primer_p1>
		<pcr_primer_p2>CTGACCTACTGTACCAGACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>TGTGTTATTTATCACTTTTATTAGCAAAATTATTATATACAGGACAGAACAAACTTTTAAATAAATTTACCAACTTCCCGTTTTACTGAAATTGCGTTTCGTCCGTTTTTGAGCCGCCGATCATCCGGTTTTCCTAACTTTTGACCAAGTTCTGCTTTTTTAAACTACATTAAATTTTATTGTATCAGGCTAAAAAATTTAAACCCCACTGAACAAAAATATAGAGCTTCGATTTCGTAGTTGACAACTTTTTCGTAATAATGCATCCAACTGGAATATCTTTTGTCTGGTACAGTAGGTCAG</canonical_amplicon>
		<polymorphic_amplicon>TGTGTTATTTATCACTTTTATTAGCAAAATTATTATATACAGGACAGAACAAACTTTTAAATAAATTTACCWACTTCCCGTTTTACTGAAATTGCGTTTCGTCCGTTTTTGAGCCGCCGATCATCCGGTTTTCCTAACTTTTGACCAAGTTCTGCTTTTTTAAACTACATTAAATTTTATTGTATCAGGCTAAAAAATTTAAACCCCACTGAACAAAAATATAGAGCTTCGATTTCGTAGTTGACAACTTTTTCGTAATAATGCATCCAACTGGAATATCTTTTGTCTGGTACAGTAGGTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16849</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>235141</contig_pos>
        <strand></strand>
        <context>CCGTTTTTGA[G/A]CCGCCGATCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAATTTACCAACTTCCCGTTTTACTGAAATTGCGTTTCGTCCGTTTTTGA</left_flank>
        <right_flank>CCGCCGATCATCCGGTTTTCCTAACTTTTGACCAAGTTCTGCTTTTTTAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAAATTGCATTTCGTCCGTTTTTGAGCCGCCAATCATCCGTTTCAAATAGTTAACTTTTTGTGGACCACCTGTACAACGATTTTGAAGTTCCTGGGGCACAAGGGGTACTAAACCCTCAATTTAGATATACAAAACAATTGAAAAAGTTAAATTTAGTTCTTCAGTACCTATCAGATTTATGTCACTGGCTGGTAATTAGCACATCATGTCAGAAACCATTTTTCTTTGAGTAAACCGACCTAATTGCTCTCTTTAATTGATTTTTTTTCATTCTCTTACCCTGTCTTTTCCTGTCATATTGGTCCGACAGCGTGAGCCGCTCATCGTCCGTTTTTAACAATTTCAAACTGAATACGTCCGAATAGTGGTAGATACATATTTAATTGTGTTATTTATCACTTTTATTAGCAAAATTATTATATACAGGACAGAACAAACTTTTAAATAAATTTACCAACTTCCCGTTTTACTGAAATTGCGTTTCGTCCGTTTTTGAGCCGCCGATCATCCGGTTTTCCTAACTTTTGACCAAGTTCTGCTTTTTTAAACTACATTAAATTTTATTGTATCAGGCTAAAAAATTTAAACCCCACTGAACAAAAATATAGAGCTTCGATTTCGTAGTTGACAACTTTTTCGTAATAATGCATCCAACTGGAATATCTTTTGTCTGGTACAGTAGGTCAGCTACCCATTTTTGGAAAGCGGACCAGCGACATGAGATGCATTGCTTGAAAGCAACCAAATGCCAAAACTTCCTAAAAATGGTACTGTAGGTTAGATACCGATTCTTAGTATGCAGAAAATTTTTGTTCTCTATGATACCTGCTGGGCAGCTGCCCTCACCCATTTATGACTGACAAAAAAGACCAATTAGCCCCTCCTACCTTGCCACGTCACAACTACCCCTGCCTTCTTCTTTTTCCTATGTCTTATCGTTGCTTCGTTCGCTATTAAACATCCTATCCATGGTTCTCTGAAAATGCGATCTTTCCAA</canonical>
            <polymorphic>ATGAAATTGCATTTCGTCCGTTTTTGAGCCGCCAATCATCCGTTTCAAATAGTTAACTTTTTGTGGACCACCTGTACAACGATTTTGAAGTTCCTGGGGCACAAGGGGTACTAAACCCTCAATTTAGATATACAAAACAATTGAAAAAGTTAAATTTAGTTCTTCAGTACCTATCAGATTTATGTCACTGGCTGGTAATTAGCACATCATGTCAGAAACCATTTTTCTTTGAGTAAACCGACCTAATTGCTCTCTTTAATTGATTTTTTTTCATTCTCTTACCCTGTCTTTTCCTGTCATATTGGTCCGACAGCGTGAGCCGCTCATCGTCCGTTTTTAACAATTTCAAACTGAATACGTCCGAATAGTGGTAGATACATATTTAATTGTGTTATTTATCACTTTTATTAGCAAAATTATTATATACAGGACAGAACAAACTTTTAAATAAATTTACCAACTTCCCGTTTTACTGAAATTGCGTTTCGTCCGTTTTTGARCCGCCGATCATCCGGTTTTCCTAACTTTTGACCAAGTTCTGCTTTTTTAAACTACATTAAATTTTATTGTATCAGGCTAAAAAATTTAAACCCCACTGAACAAAAATATAGAGCTTCGATTTCGTAGTTGACAACTTTTTCGTAATAATGCATCCAACTGGAATATCTTTTGTCTGGTACAGTAGGTCAGCTACCCATTTTTGGAAAGCGGACCAGCGACATGAGATGCATTGCTTGAAAGCAACCAAATGCCAAAACTTCCTAAAAATGGTACTGTAGGTTAGATACCGATTCTTAGTATGCAGAAAATTTTTGTTCTCTATGATACCTGCTGGGCAGCTGCCCTCACCCATTTATGACTGACAAAAAAGACCAATTAGCCCCTCCTACCTTGCCACGTCACAACTACCCCTGCCTTCTTCTTTTTCCTATGTCTTATCGTTGCTTCGTTCGCTATTAAACATCCTATCCATGGTTCTCTGAAAATGCGATCTTTCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>336 291 181 161 31</canonical_bands>
                <polymorphic_bands>517 291 161 31</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>181 163 149 128 120 77 76 41 37 28</canonical_bands>
                <polymorphic_bands>257 163 149 128 120 77 41 37 28</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>497 291 181 31</canonical_bands>
                <polymorphic_bands>678 291 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAAAATTATTATATACAGGACAGAA</pcr_primer_p1>
		<pcr_primer_p2>TGACCTACTGTACCAGACAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>279</pcr_amplicon_size>
		<canonical_amplicon>GCAAAATTATTATATACAGGACAGAACAAACTTTTAAATAAATTTACCAACTTCCCGTTTTACTGAAATTGCGTTTCGTCCGTTTTTGAGCCGCCGATCATCCGGTTTTCCTAACTTTTGACCAAGTTCTGCTTTTTTAAACTACATTAAATTTTATTGTATCAGGCTAAAAAATTTAAACCCCACTGAACAAAAATATAGAGCTTCGATTTCGTAGTTGACAACTTTTTCGTAATAATGCATCCAACTGGAATATCTTTTGTCTGGTACAGTAGGTCA</canonical_amplicon>
		<polymorphic_amplicon>GCAAAATTATTATATACAGGACAGAACAAACTTTTAAATAAATTTACCAACTTCCCGTTTTACTGAAATTGCGTTTCGTCCGTTTTTGARCCGCCGATCATCCGGTTTTCCTAACTTTTGACCAAGTTCTGCTTTTTTAAACTACATTAAATTTTATTGTATCAGGCTAAAAAATTTAAACCCCACTGAACAAAAATATAGAGCTTCGATTTCGTAGTTGACAACTTTTTCGTAATAATGCATCCAACTGGAATATCTTTTGTCTGGTACAGTAGGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16850</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>235163</contig_pos>
        <strand></strand>
        <context>CCGGttttcc[T/C]aacttttgac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACTGAAATTGCGTTTCGTCCGTTTTTGAGCCGCCGATCATCCGGTTTTCC</left_flank>
        <right_flank>AACTTTTGACCAAGTTCTGCTTTTTTAAACTACATTAAATTTTATTGTAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAGCCGCCAATCATCCGTTTCAAATAGTTAACTTTTTGTGGACCACCTGTACAACGATTTTGAAGTTCCTGGGGCACAAGGGGTACTAAACCCTCAATTTAGATATACAAAACAATTGAAAAAGTTAAATTTAGTTCTTCAGTACCTATCAGATTTATGTCACTGGCTGGTAATTAGCACATCATGTCAGAAACCATTTTTCTTTGAGTAAACCGACCTAATTGCTCTCTTTAATTGATTTTTTTTCATTCTCTTACCCTGTCTTTTCCTGTCATATTGGTCCGACAGCGTGAGCCGCTCATCGTCCGTTTTTAACAATTTCAAACTGAATACGTCCGAATAGTGGTAGATACATATTTAATTGTGTTATTTATCACTTTTATTAGCAAAATTATTATATACAGGACAGAACAAACTTTTAAATAAATTTACCAACTTCCCGTTTTACTGAAATTGCGTTTCGTCCGTTTTTGAGCCGCCGATCATCCGGTTTTCCTAACTTTTGACCAAGTTCTGCTTTTTTAAACTACATTAAATTTTATTGTATCAGGCTAAAAAATTTAAACCCCACTGAACAAAAATATAGAGCTTCGATTTCGTAGTTGACAACTTTTTCGTAATAATGCATCCAACTGGAATATCTTTTGTCTGGTACAGTAGGTCAGCTACCCATTTTTGGAAAGCGGACCAGCGACATGAGATGCATTGCTTGAAAGCAACCAAATGCCAAAACTTCCTAAAAATGGTACTGTAGGTTAGATACCGATTCTTAGTATGCAGAAAATTTTTGTTCTCTATGATACCTGCTGGGCAGCTGCCCTCACCCATTTATGACTGACAAAAAAGACCAATTAGCCCCTCCTACCTTGCCACGTCACAACTACCCCTGCCTTCTTCTTTTTCCTATGTCTTATCGTTGCTTCGTTCGCTATTAAACATCCTATCCATGGTTCTCTGAAAATGCGATCTTTCCAACCTTTTCCTCCTGTCTCATTGT</canonical>
            <polymorphic>TTTGAGCCGCCAATCATCCGTTTCAAATAGTTAACTTTTTGTGGACCACCTGTACAACGATTTTGAAGTTCCTGGGGCACAAGGGGTACTAAACCCTCAATTTAGATATACAAAACAATTGAAAAAGTTAAATTTAGTTCTTCAGTACCTATCAGATTTATGTCACTGGCTGGTAATTAGCACATCATGTCAGAAACCATTTTTCTTTGAGTAAACCGACCTAATTGCTCTCTTTAATTGATTTTTTTTCATTCTCTTACCCTGTCTTTTCCTGTCATATTGGTCCGACAGCGTGAGCCGCTCATCGTCCGTTTTTAACAATTTCAAACTGAATACGTCCGAATAGTGGTAGATACATATTTAATTGTGTTATTTATCACTTTTATTAGCAAAATTATTATATACAGGACAGAACAAACTTTTAAATAAATTTACCAACTTCCCGTTTTACTGAAATTGCGTTTCGTCCGTTTTTGAGCCGCCGATCATCCGGTTTTCCYAACTTTTGACCAAGTTCTGCTTTTTTAAACTACATTAAATTTTATTGTATCAGGCTAAAAAATTTAAACCCCACTGAACAAAAATATAGAGCTTCGATTTCGTAGTTGACAACTTTTTCGTAATAATGCATCCAACTGGAATATCTTTTGTCTGGTACAGTAGGTCAGCTACCCATTTTTGGAAAGCGGACCAGCGACATGAGATGCATTGCTTGAAAGCAACCAAATGCCAAAACTTCCTAAAAATGGTACTGTAGGTTAGATACCGATTCTTAGTATGCAGAAAATTTTTGTTCTCTATGATACCTGCTGGGCAGCTGCCCTCACCCATTTATGACTGACAAAAAAGACCAATTAGCCCCTCCTACCTTGCCACGTCACAACTACCCCTGCCTTCTTCTTTTTCCTATGTCTTATCGTTGCTTCGTTCGCTATTAAACATCCTATCCATGGTTCTCTGAAAATGCGATCTTTCCAACCTTTTCCTCCTGTCTCATTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCCGTTTTACTGAAATTG</pcr_primer_p1>
		<pcr_primer_p2>CTGACCTACTGTACCAGACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>TTCCCGTTTTACTGAAATTGCGTTTCGTCCGTTTTTGAGCCGCCGATCATCCGGTTTTCCTAACTTTTGACCAAGTTCTGCTTTTTTAAACTACATTAAATTTTATTGTATCAGGCTAAAAAATTTAAACCCCACTGAACAAAAATATAGAGCTTCGATTTCGTAGTTGACAACTTTTTCGTAATAATGCATCCAACTGGAATATCTTTTGTCTGGTACAGTAGGTCAG</canonical_amplicon>
		<polymorphic_amplicon>TTCCCGTTTTACTGAAATTGCGTTTCGTCCGTTTTTGAGCCGCCGATCATCCGGTTTTCCYAACTTTTGACCAAGTTCTGCTTTTTTAAACTACATTAAATTTTATTGTATCAGGCTAAAAAATTTAAACCCCACTGAACAAAAATATAGAGCTTCGATTTCGTAGTTGACAACTTTTTCGTAATAATGCATCCAACTGGAATATCTTTTGTCTGGTACAGTAGGTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16851</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>235435</contig_pos>
        <strand></strand>
        <context>GATACCGATT[C/T]TTAGTATGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCAAATGCCAAAACTTCCTAAAAATGGTACTGTAGGTTAGATACCGATT</left_flank>
        <right_flank>TTAGTATGCAGAAAATTTTTGTTCTCTATGATACCTGCTGGGCAGCTGCC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTCATATTGGTCCGACAGCGTGAGCCGCTCATCGTCCGTTTTTAACAATTTCAAACTGAATACGTCCGAATAGTGGTAGATACATATTTAATTGTGTTATTTATCACTTTTATTAGCAAAATTATTATATACAGGACAGAACAAACTTTTAAATAAATTTACCAACTTCCCGTTTTACTGAAATTGCGTTTCGTCCGTTTTTGAGCCGCCGATCATCCGGTTTTCCTAACTTTTGACCAAGTTCTGCTTTTTTAAACTACATTAAATTTTATTGTATCAGGCTAAAAAATTTAAACCCCACTGAACAAAAATATAGAGCTTCGATTTCGTAGTTGACAACTTTTTCGTAATAATGCATCCAACTGGAATATCTTTTGTCTGGTACAGTAGGTCAGCTACCCATTTTTGGAAAGCGGACCAGCGACATGAGATGCATTGCTTGAAAGCAACCAAATGCCAAAACTTCCTAAAAATGGTACTGTAGGTTAGATACCGATTCTTAGTATGCAGAAAATTTTTGTTCTCTATGATACCTGCTGGGCAGCTGCCCTCACCCATTTATGACTGACAAAAAAGACCAATTAGCCCCTCCTACCTTGCCACGTCACAACTACCCCTGCCTTCTTCTTTTTCCTATGTCTTATCGTTGCTTCGTTCGCTATTAAACATCCTATCCATGGTTCTCTGAAAATGCGATCTTTCCAACCTTTTCCTCCTGTCTCATTGTCCAATTCCTTATTTCATGCTTCCCCTTCGTTACTCGTTCCATCTACAACCCTCAACATTAATCAATAACCATTTATTTCCAGAGACGACGGGAAGACGACGGCATCAATCTACAAACAACCATCCGCTATCATCGTCGTCATCCTCAACGTCCTCAACAGCACCACCAACACCATCATCTGGCGTGCCCTCAGCTTCGTCAGCGTCGTCGCTGATGAGTAATCGAAAGGGAGGAGGCGGTGCAGGTGATTATCAGGAGGTGATCGAATCGCT</canonical>
            <polymorphic>TGTCATATTGGTCCGACAGCGTGAGCCGCTCATCGTCCGTTTTTAACAATTTCAAACTGAATACGTCCGAATAGTGGTAGATACATATTTAATTGTGTTATTTATCACTTTTATTAGCAAAATTATTATATACAGGACAGAACAAACTTTTAAATAAATTTACCAACTTCCCGTTTTACTGAAATTGCGTTTCGTCCGTTTTTGAGCCGCCGATCATCCGGTTTTCCTAACTTTTGACCAAGTTCTGCTTTTTTAAACTACATTAAATTTTATTGTATCAGGCTAAAAAATTTAAACCCCACTGAACAAAAATATAGAGCTTCGATTTCGTAGTTGACAACTTTTTCGTAATAATGCATCCAACTGGAATATCTTTTGTCTGGTACAGTAGGTCAGCTACCCATTTTTGGAAAGCGGACCAGCGACATGAGATGCATTGCTTGAAAGCAACCAAATGCCAAAACTTCCTAAAAATGGTACTGTAGGTTAGATACCGATTYTTAGTATGCAGAAAATTTTTGTTCTCTATGATACCTGCTGGGCAGCTGCCCTCACCCATTTATGACTGACAAAAAAGACCAATTAGCCCCTCCTACCTTGCCACGTCACAACTACCCCTGCCTTCTTCTTTTTCCTATGTCTTATCGTTGCTTCGTTCGCTATTAAACATCCTATCCATGGTTCTCTGAAAATGCGATCTTTCCAACCTTTTCCTCCTGTCTCATTGTCCAATTCCTTATTTCATGCTTCCCCTTCGTTACTCGTTCCATCTACAACCCTCAACATTAATCAATAACCATTTATTTCCAGAGACGACGGGAAGACGACGGCATCAATCTACAAACAACCATCCGCTATCATCGTCGTCATCCTCAACGTCCTCAACAGCACCACCAACACCATCATCTGGCGTGCCCTCAGCTTCGTCAGCGTCGTCGCTGATGAGTAATCGAAAGGGAGGAGGCGGTGCAGGTGATTATCAGGAGGTGATCGAATCGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 417 83</canonical_bands>
                <polymorphic_bands>917 83</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>497 496 7</canonical_bands>
                <polymorphic_bands>993 7</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>497 496 7</canonical_bands>
                <polymorphic_bands>993 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCTACCCATTTTTGGAAAG</pcr_primer_p1>
		<pcr_primer_p2>CGATAAGACATAGGAAAAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AGCTACCCATTTTTGGAAAGCGGACCAGCGACATGAGATGCATTGCTTGAAAGCAACCAAATGCCAAAACTTCCTAAAAATGGTACTGTAGGTTAGATACCGATTCTTAGTATGCAGAAAATTTTTGTTCTCTATGATACCTGCTGGGCAGCTGCCCTCACCCATTTATGACTGACAAAAAAGACCAATTAGCCCCTCCTACCTTGCCACGTCACAACTACCCCTGCCTTCTTCTTTTTCCTATGTCTTATCG</canonical_amplicon>
		<polymorphic_amplicon>AGCTACCCATTTTTGGAAAGCGGACCAGCGACATGAGATGCATTGCTTGAAAGCAACCAAATGCCAAAACTTCCTAAAAATGGTACTGTAGGTTAGATACCGATTYTTAGTATGCAGAAAATTTTTGTTCTCTATGATACCTGCTGGGCAGCTGCCCTCACCCATTTATGACTGACAAAAAAGACCAATTAGCCCCTCCTACCTTGCCACGTCACAACTACCCCTGCCTTCTTCTTTTTCCTATGTCTTATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16852</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>236937</contig_pos>
        <strand>+</strand>
        <context>AATTGCTTGG[A/G]CCAACCGTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAAATGTTGTCTACCAAGTATTTCACTAATTGAGTCTCTAATTGCTTGG</left_flank>
        <right_flank>CCAACCGTAATCACCCTTATCTGCTAATCTGCTTTCTATAACTCCAAATT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCACTTTGAGCCAATTTATCTCAGTTCCTATAACAGATATCCTGAAGTGTCAATTAACAAAATGTTTATTATAATATCAGAAACATTTTGTCAGTTGACTACTTTTTGATATCTTTCACAGGAACCGAGGTAAATTAGCTGAAAGTAAAAGTATAGGTTGACCTTCTGTGAGGGGGAGGGAGCGAGGGCTAGTAAGAGACGCAGAGAAGCTAGATGATCTAGCTTCTCAGTGTCTCCGATTAGAAAGAGCAGGTAGCTGTCTAGAAATATTTGACTCATAATCGACATATGTATCCGTAAATTTTATTGCACCTCCGCCGTTTTTTGAACCACGCGCCGTATGTTCCGATCTCTCATGAGCTGCTTCTTTTTGTCTTCTTTTGCTTTCTTCATGATTATAAAACACTCCGGAGCTTTCTCTTTTCTTCCACCCCCATCTCCATGAGATCCAAATGTTGTCTACCAAGTATTTCACTAATTGAGTCTCTAATTGCTTGGACCAACCGTAATCACCCTTATCTGCTAATCTGCTTTCTATAACTCCAAATTTGCAGGCAACACACCATCGGTGACAATCCCGAGTCAGTGTCAAGTGATGACACCCCGAATATCATCGCCATCATCTGTGATGGCACCGTCGGTTACAGTAACCTCGGGAACCGTACAACAAGGGAAGACGTTCGCCAGAATTCAAGGAAGCTCGCCGAGTAATACAACCCACTCGACACCAACCGTCGCTCAAGCCATGCAAAGCGTCGCTCCACACATCCCAATCGTCGGAGCCGGTGCAGATGATAGCAGTGCTGAAATTCTATCGGTTTTCGAGTGCCCAGTTTGTTTGGAATACATGCTACCACCATACATGCAATGCCCATCTGGCCATTTGGTGTGCTCGAACTGCCGACCAAAACTTCAGTGCTGCCCAACTTGCCGTGGACCAACTCGTGAGTTTTGATTCAAAACTTTTGAAATTCGAATTATCATCTTTGAAGTAATAGC</canonical>
            <polymorphic>TGCACTTTGAGCCAATTTATCTCAGTTCCTATAACAGATATCCTGAAGTGTCAATTAACAAAATGTTTATTATAATATCAGAAACATTTTGTCAGTTGACTACTTTTTGATATCTTTCACAGGAACCGAGGTAAATTAGCTGAAAGTAAAAGTATAGGTTGACCTTCTGTGAGGGGGAGGGAGCGAGGGCTAGTAAGAGACGCAGAGAAGCTAGATGATCTAGCTTCTCAGTGTCTCCGATTAGAAAGAGCAGGTAGCTGTCTAGAAATATTTGACTCATAATCGACATATGTATCCGTAAATTTTATTGCACCTCCGCCGTTTTTTGAACCACGCGCCGTATGTTCCGATCTCTCATGAGCTGCTTCTTTTTGTCTTCTTTTGCTTTCTTCATGATTATAAAACACTCCGGAGCTTTCTCTTTTCTTCCACCCCCATCTCCATGAGATCCAAATGTTGTCTACCAAGTATTTCACTAATTGAGTCTCTAATTGCTTGGRCCAACCGTAATCACCCTTATCTGCTAATCTGCTTTCTATAACTCCAAATTTGCAGGCAACACACCATCGGTGACAATCCCGAGTCAGTGTCAAGTGATGACACCCCGAATATCATCGCCATCATCTGTGATGGCACCGTCGGTTACAGTAACCTCGGGAACCGTACAACAAGGGAAGACGTTCGCCAGAATTCAAGGAAGCTCGCCGAGTAATACAACCCACTCGACACCAACCGTCGCTCAAGCCATGCAAAGCGTCGCTCCACACATCCCAATCGTCGGAGCCGGTGCAGATGATAGCAGTGCTGAAATTCTATCGGTTTTCGAGTGCCCAGTTTGTTTGGAATACATGCTACCACCATACATGCAATGCCCATCTGGCCATTTGGTGTGCTCGAACTGCCGACCAAAACTTCAGTGCTGCCCAACTTGCCGTGGACCAACTCGTGAGTTTTGATTCAAAACTTTTGAAATTCGAATTATCATCTTTGAAGTAATAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>498 438 64</canonical_bands>
                <polymorphic_bands>936 64</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGCTTCTTTTTGTCTTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTGTCATCACTTGACACTGACT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CTGCTTCTTTTTGTCTTCTTTTGCTTTCTTCATGATTATAAAACACTCCGGAGCTTTCTCTTTTCTTCCACCCCCATCTCCATGAGATCCAAATGTTGTCTACCAAGTATTTCACTAATTGAGTCTCTAATTGCTTGGACCAACCGTAATCACCCTTATCTGCTAATCTGCTTTCTATAACTCCAAATTTGCAGGCAACACACCATCGGTGACAATCCCGAGTCAGTGTCAAGTGATGACAC</canonical_amplicon>
		<polymorphic_amplicon>CTGCTTCTTTTTGTCTTCTTTTGCTTTCTTCATGATTATAAAACACTCCGGAGCTTTCTCTTTTCTTCCACCCCCATCTCCATGAGATCCAAATGTTGTCTACCAAGTATTTCACTAATTGAGTCTCTAATTGCTTGGRCCAACCGTAATCACCCTTATCTGCTAATCTGCTTTCTATAACTCCAAATTTGCAGGCAACACACCATCGGTGACAATCCCGAGTCAGTGTCAAGTGATGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16853</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>236772</contig_pos>
        <strand>+</strand>
        <context>TTTGAACCAC[C/G]CGCCGTATGT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GACATATGTATCCGTAAATTTTATTGCACCTCCGCCGTTTTTTGAACCAC</left_flank>
        <right_flank>CGCCGTATGTTCCGATCTCTCATGAGCTGCTTCTTTTTGTCTTCTTTTGC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTACCCTTTCATCCGGAATACACCAAACCCCCACATGTACATTTGACTGACTAAACGACACCAATTAGGAGCCGAAGCGGACGCAAATCGCTTTCTTTTGTTTCCCACTTTAAGGAACTACAAATGACCATTTTGACAGATTTTGTTCGGAGAAGCTCATGCTTGCACTTTGAGCCAATTTATCTCAGTTCCTATAACAGATATCCTGAAGTGTCAATTAACAAAATGTTTATTATAATATCAGAAACATTTTGTCAGTTGACTACTTTTTGATATCTTTCACAGGAACCGAGGTAAATTAGCTGAAAGTAAAAGTATAGGTTGACCTTCTGTGAGGGGGAGGGAGCGAGGGCTAGTAAGAGACGCAGAGAAGCTAGATGATCTAGCTTCTCAGTGTCTCCGATTAGAAAGAGCAGGTAGCTGTCTAGAAATATTTGACTCATAATCGACATATGTATCCGTAAATTTTATTGCACCTCCGCCGTTTTTTGAACCACGCGCCGTATGTTCCGATCTCTCATGAGCTGCTTCTTTTTGTCTTCTTTTGCTTTCTTCATGATTATAAAACACTCCGGAGCTTTCTCTTTTCTTCCACCCCCATCTCCATGAGATCCAAATGTTGTCTACCAAGTATTTCACTAATTGAGTCTCTAATTGCTTGGACCAACCGTAATCACCCTTATCTGCTAATCTGCTTTCTATAACTCCAAATTTGCAGGCAACACACCATCGGTGACAATCCCGAGTCAGTGTCAAGTGATGACACCCCGAATATCATCGCCATCATCTGTGATGGCACCGTCGGTTACAGTAACCTCGGGAACCGTACAACAAGGGAAGACGTTCGCCAGAATTCAAGGAAGCTCGCCGAGTAATACAACCCACTCGACACCAACCGTCGCTCAAGCCATGCAAAGCGTCGCTCCACACATCCCAATCGTCGGAGCCGGTGCAGATGATAGCAGTGCTGAAATTCTATCGGTTTTCGAGTGCCCAGT</canonical>
            <polymorphic>TGGTACCCTTTCATCCGGAATACACCAAACCCCCACATGTACATTTGACTGACTAAACGACACCAATTAGGAGCCGAAGCGGACGCAAATCGCTTTCTTTTGTTTCCCACTTTAAGGAACTACAAATGACCATTTTGACAGATTTTGTTCGGAGAAGCTCATGCTTGCACTTTGAGCCAATTTATCTCAGTTCCTATAACAGATATCCTGAAGTGTCAATTAACAAAATGTTTATTATAATATCAGAAACATTTTGTCAGTTGACTACTTTTTGATATCTTTCACAGGAACCGAGGTAAATTAGCTGAAAGTAAAAGTATAGGTTGACCTTCTGTGAGGGGGAGGGAGCGAGGGCTAGTAAGAGACGCAGAGAAGCTAGATGATCTAGCTTCTCAGTGTCTCCGATTAGAAAGAGCAGGTAGCTGTCTAGAAATATTTGACTCATAATCGACATATGTATCCGTAAATTTTATTGCACCTCCGCCGTTTTTTGAACCACSCGCCGTATGTTCCGATCTCTCATGAGCTGCTTCTTTTTGTCTTCTTTTGCTTTCTTCATGATTATAAAACACTCCGGAGCTTTCTCTTTTCTTCCACCCCCATCTCCATGAGATCCAAATGTTGTCTACCAAGTATTTCACTAATTGAGTCTCTAATTGCTTGGACCAACCGTAATCACCCTTATCTGCTAATCTGCTTTCTATAACTCCAAATTTGCAGGCAACACACCATCGGTGACAATCCCGAGTCAGTGTCAAGTGATGACACCCCGAATATCATCGCCATCATCTGTGATGGCACCGTCGGTTACAGTAACCTCGGGAACCGTACAACAAGGGAAGACGTTCGCCAGAATTCAAGGAAGCTCGCCGAGTAATACAACCCACTCGACACCAACCGTCGCTCAAGCCATGCAAAGCGTCGCTCCACACATCCCAATCGTCGGAGCCGGTGCAGATGATAGCAGTGCTGAAATTCTATCGGTTTTCGAGTGCCCAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCGACATATGTATCCGTAAAT</pcr_primer_p1>
		<pcr_primer_p2>CAGATTAGCAGATAAGGGTGAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATCGACATATGTATCCGTAAATTTTATTGCACCTCCGCCGTTTTTTGAACCACGCGCCGTATGTTCCGATCTCTCATGAGCTGCTTCTTTTTGTCTTCTTTTGCTTTCTTCATGATTATAAAACACTCCGGAGCTTTCTCTTTTCTTCCACCCCCATCTCCATGAGATCCAAATGTTGTCTACCAAGTATTTCACTAATTGAGTCTCTAATTGCTTGGACCAACCGTAATCACCCTTATCTGCTAATCTG</canonical_amplicon>
		<polymorphic_amplicon>AATCGACATATGTATCCGTAAATTTTATTGCACCTCCGCCGTTTTTTGAACCACSCGCCGTATGTTCCGATCTCTCATGAGCTGCTTCTTTTTGTCTTCTTTTGCTTTCTTCATGATTATAAAACACTCCGGAGCTTTCTCTTTTCTTCCACCCCCATCTCCATGAGATCCAAATGTTGTCTACCAAGTATTTCACTAATTGAGTCTCTAATTGCTTGGACCAACCGTAATCACCCTTATCTGCTAATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16854</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>239816</contig_pos>
        <strand>+</strand>
        <context>ATCACAAGCT[A/C]CTGATTCTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCCATTGGGCCATGAAATCATTGAAAGCCAAATTGTAAGATCACAAGCT</left_flank>
        <right_flank>CTGATTCTTCCAGATTCGATTATTTCAAAATTTTAGAGTTCTTGCGTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAATTTTGATGATGTTGATGACACTACGGCTTTCTTCTTTTCCCACCACAGTTTTTTCTTATCCTTTAATTTTTTGCAGCTCTTTTCTCCCACATTTTTTTCTCATATGAGCTTTCCAGTGTTGTTTTTTTTTTGAAAATTGTGTAGATTCCTTTCTTCTTCTATTCAATTTCCCTTTTCAACAACATAGCCATGTTTGAGTTCAGAAAGTTATTTTTTGCAAATAATCCAAAAAAAAATTAAGTGTAAAAATAAATAAATCGTTCCCCAGATAAATGAAATGTTGTTTTTGAAAGCGAAAATACTATGAAACAAAGTTGATCAAATAATTTGAAACTTGACCAGTTTACCGACAAAATATTTGAGCTTTTGCACTGCGAGTTTGAGCCCAGTACAACGCAATTCTTAAATTTTATGCTAGCACAAACTTGAGTCGTTTGACTTCTACATCCATTGGGCCATGAAATCATTGAAAGCCAAATTGTAAGATCACAAGCTACTGATTCTTCCAGATTCGATTATTTCAAAATTTTAGAGTTCTTGCGTTTGGAGCTCGTTGATCCCATAACTTTAAAATTCTGATTTGTTAAATCTATCTAAATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATTGACTGTTACCGCTGAAAAAGGCGCAAGATAGCAGTAAAAATTTGACAGTTATAAACTTTGTAGTATAAAATCACAAGCATTTAATTGGTGGAAAGTTTTTTTTGATATTTCTTTCCGGAACAAAGACACCGTATTTGCTCTAGAAGCCCGCTGAAAAAGTCAACTTTGAACTTAATTATCTCGATTCCTGTGAAAAATATAAAAAAGTATCCAATTAGCTAAATATTGCTGATATCATGATAAAAATTTTATCAGTTGAGATTTTTTTATATCTTTTACAGGATCCGAGAAAAACTGACTTTAAGTTT</canonical>
            <polymorphic>TTAATTTTGATGATGTTGATGACACTACGGCTTTCTTCTTTTCCCACCACAGTTTTTTCTTATCCTTTAATTTTTTGCAGCTCTTTTCTCCCACATTTTTTTCTCATATGAGCTTTCCAGTGTTGTTTTTTTTTTGAAAATTGTGTAGATTCCTTTCTTCTTCTATTCAATTTCCCTTTTCAACAACATAGCCATGTTTGAGTTCAGAAAGTTATTTTTTGCAAATAATCCAAAAAAAAATTAAGTGTAAAAATAAATAAATCGTTCCCCAGATAAATGAAATGTTGTTTTTGAAAGCGAAAATACTATGAAACAAAGTTGATCAAATAATTTGAAACTTGACCAGTTTACCGACAAAATATTTGAGCTTTTGCACTGCGAGTTTGAGCCCAGTACAACGCAATTCTTAAATTTTATGCTAGCACAAACTTGAGTCGTTTGACTTCTACATCCATTGGGCCATGAAATCATTGAAAGCCAAATTGTAAGATCACAAGCTMCTGATTCTTCCAGATTCGATTATTTCAAAATTTTAGAGTTCTTGCGTTTGGAGCTCGTTGATCCCATAACTTTAAAATTCTGATTTGTTAAATCTATCTAAATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATTGACTGTTACCGCTGAAAAAGGCGCAAGATAGCAGTAAAAATTTGACAGTTATAAACTTTGTAGTATAAAATCACAAGCATTTAATTGGTGGAAAGTTTTTTTTGATATTTCTTTCCGGAACAAAGACACCGTATTTGCTCTAGAAGCCCGCTGAAAAAGTCAACTTTGAACTTAATTATCTCGATTCCTGTGAAAAATATAAAAAAGTATCCAATTAGCTAAATATTGCTGATATCATGATAAAAATTTTATCAGTTGAGATTTTTTTATATCTTTTACAGGATCCGAGAAAAACTGACTTTAAGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAAAGCGAAAATACTATGAAA</pcr_primer_p1>
		<pcr_primer_p2>CCAAACGCAAGAACTCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>TTGAAAGCGAAAATACTATGAAACAAAGTTGATCAAATAATTTGAAACTTGACCAGTTTACCGACAAAATATTTGAGCTTTTGCACTGCGAGTTTGAGCCCAGTACAACGCAATTCTTAAATTTTATGCTAGCACAAACTTGAGTCGTTTGACTTCTACATCCATTGGGCCATGAAATCATTGAAAGCCAAATTGTAAGATCACAAGCTACTGATTCTTCCAGATTCGATTATTTCAAAATTTTAGAGTTCTTGCGTTTGG</canonical_amplicon>
		<polymorphic_amplicon>TTGAAAGCGAAAATACTATGAAACAAAGTTGATCAAATAATTTGAAACTTGACCAGTTTACCGACAAAATATTTGAGCTTTTGCACTGCGAGTTTGAGCCCAGTACAACGCAATTCTTAAATTTTATGCTAGCACAAACTTGAGTCGTTTGACTTCTACATCCATTGGGCCATGAAATCATTGAAAGCCAAATTGTAAGATCACAAGCTMCTGATTCTTCCAGATTCGATTATTTCAAAATTTTAGAGTTCTTGCGTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16855</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>239890</contig_pos>
        <strand>+</strand>
        <context>CCATAACTTT[A/T]AAATTKTGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCAAAATTTTAGAGTTCTTGCGTTTGGAGCTCGTTGATCCCATAACTTT</left_flank>
        <right_flank>AAATTCTGATTTGTTAAATCTATCTAAATGAATTGTATGGATATTTTAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCAGCTCTTTTCTCCCACATTTTTTTCTCATATGAGCTTTCCAGTGTTGTTTTTTTTTTGAAAATTGTGTAGATTCCTTTCTTCTTCTATTCAATTTCCCTTTTCAACAACATAGCCATGTTTGAGTTCAGAAAGTTATTTTTTGCAAATAATCCAAAAAAAAATTAAGTGTAAAAATAAATAAATCGTTCCCCAGATAAATGAAATGTTGTTTTTGAAAGCGAAAATACTATGAAACAAAGTTGATCAAATAATTTGAAACTTGACCAGTTTACCGACAAAATATTTGAGCTTTTGCACTGCGAGTTTGAGCCCAGTACAACGCAATTCTTAAATTTTATGCTAGCACAAACTTGAGTCGTTTGACTTCTACATCCATTGGGCCATGAAATCATTGAAAGCCAAATTGTAAGATCACAAGCTACTGATTCTTCCAGATTCGATTATTTCAAAATTTTAGAGTTCTTGCGTTTGGAGCTCGTTGATCCCATAACTTTAAAATTCTGATTTGTTAAATCTATCTAAATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATTGACTGTTACCGCTGAAAAAGGCGCAAGATAGCAGTAAAAATTTGACAGTTATAAACTTTGTAGTATAAAATCACAAGCATTTAATTGGTGGAAAGTTTTTTTTGATATTTCTTTCCGGAACAAAGACACCGTATTTGCTCTAGAAGCCCGCTGAAAAAGTCAACTTTGAACTTAATTATCTCGATTCCTGTGAAAAATATAAAAAAGTATCCAATTAGCTAAATATTGCTGATATCATGATAAAAATTTTATCAGTTGAGATTTTTTTATATCTTTTACAGGATCCGAGAAAAACTGACTTTAAGTTTCTTCATTTTTGTTCACATTTGGCTCAAGTGAATCTTAGCATTCTTTTCGAAAGCCGGGCCGGCCCTGGCAGAGT</canonical>
            <polymorphic>TTGCAGCTCTTTTCTCCCACATTTTTTTCTCATATGAGCTTTCCAGTGTTGTTTTTTTTTTGAAAATTGTGTAGATTCCTTTCTTCTTCTATTCAATTTCCCTTTTCAACAACATAGCCATGTTTGAGTTCAGAAAGTTATTTTTTGCAAATAATCCAAAAAAAAATTAAGTGTAAAAATAAATAAATCGTTCCCCAGATAAATGAAATGTTGTTTTTGAAAGCGAAAATACTATGAAACAAAGTTGATCAAATAATTTGAAACTTGACCAGTTTACCGACAAAATATTTGAGCTTTTGCACTGCGAGTTTGAGCCCAGTACAACGCAATTCTTAAATTTTATGCTAGCACAAACTTGAGTCGTTTGACTTCTACATCCATTGGGCCATGAAATCATTGAAAGCCAAATTGTAAGATCACAAGCTACTGATTCTTCCAGATTCGATTATTTCAAAATTTTAGAGTTCTTGCGTTTGGAGCTCGTTGATCCCATAACTTTWAAATTCTGATTTGTTAAATCTATCTAAATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATTGACTGTTACCGCTGAAAAAGGCGCAAGATAGCAGTAAAAATTTGACAGTTATAAACTTTGTAGTATAAAATCACAAGCATTTAATTGGTGGAAAGTTTTTTTTGATATTTCTTTCCGGAACAAAGACACCGTATTTGCTCTAGAAGCCCGCTGAAAAAGTCAACTTTGAACTTAATTATCTCGATTCCTGTGAAAAATATAAAAAAGTATCCAATTAGCTAAATATTGCTGATATCATGATAAAAATTTTATCAGTTGAGATTTTTTTATATCTTTTACAGGATCCGAGAAAAACTGACTTTAAGTTTCTTCATTTTTGTTCACATTTGGCTCAAGTGAATCTTAGCATTCTTTTCGAAAGCCGGGCCGGCCCTGGCAGAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 437 64</canonical_bands>
                <polymorphic_bands>563 437</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>167 166 165 137 129 91 81 32 16 16</canonical_bands>
                <polymorphic_bands>181 167 166 137 129 91 81 32 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTGAAAGCCAAATTGTAAG</pcr_primer_p1>
		<pcr_primer_p2>AATTTTGGACTTTGGAAATCTT</pcr_primer_p2>
		<pcr_amplicon_size>224</pcr_amplicon_size>
		<canonical_amplicon>CATTGAAAGCCAAATTGTAAGATCACAAGCTACTGATTCTTCCAGATTCGATTATTTCAAAATTTTAGAGTTCTTGCGTTTGGAGCTCGTTGATCCCATAACTTTAAAATTCTGATTTGTTAAATCTATCTAAATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATT</canonical_amplicon>
		<polymorphic_amplicon>CATTGAAAGCCAAATTGTAAGATCACAAGCTACTGATTCTTCCAGATTCGATTATTTCAAAATTTTAGAGTTCTTGCGTTTGGAGCTCGTTGATCCCATAACTTTWAAATTCTGATTTGTTAAATCTATCTAAATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16856</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>239916</contig_pos>
        <strand>+</strand>
        <context>AAATCTATCT[A/T]RATGAATTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAGCTCGTTGATCCCATAACTTTAAAATTCTGATTTGTTAAATCTATCT</left_flank>
        <right_flank>AATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTCATATGAGCTTTCCAGTGTTGTTTTTTTTTTGAAAATTGTGTAGATTCCTTTCTTCTTCTATTCAATTTCCCTTTTCAACAACATAGCCATGTTTGAGTTCAGAAAGTTATTTTTTGCAAATAATCCAAAAAAAAATTAAGTGTAAAAATAAATAAATCGTTCCCCAGATAAATGAAATGTTGTTTTTGAAAGCGAAAATACTATGAAACAAAGTTGATCAAATAATTTGAAACTTGACCAGTTTACCGACAAAATATTTGAGCTTTTGCACTGCGAGTTTGAGCCCAGTACAACGCAATTCTTAAATTTTATGCTAGCACAAACTTGAGTCGTTTGACTTCTACATCCATTGGGCCATGAAATCATTGAAAGCCAAATTGTAAGATCACAAGCTACTGATTCTTCCAGATTCGATTATTTCAAAATTTTAGAGTTCTTGCGTTTGGAGCTCGTTGATCCCATAACTTTAAAATTCTGATTTGTTAAATCTATCTAAATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATTGACTGTTACCGCTGAAAAAGGCGCAAGATAGCAGTAAAAATTTGACAGTTATAAACTTTGTAGTATAAAATCACAAGCATTTAATTGGTGGAAAGTTTTTTTTGATATTTCTTTCCGGAACAAAGACACCGTATTTGCTCTAGAAGCCCGCTGAAAAAGTCAACTTTGAACTTAATTATCTCGATTCCTGTGAAAAATATAAAAAAGTATCCAATTAGCTAAATATTGCTGATATCATGATAAAAATTTTATCAGTTGAGATTTTTTTATATCTTTTACAGGATCCGAGAAAAACTGACTTTAAGTTTCTTCATTTTTGTTCACATTTGGCTCAAGTGAATCTTAGCATTCTTTTCGAAAGCCGGGCCGGCCCTGGCAGAGTCAAAATGAAAAATTCTTCGGCCCAGT</canonical>
            <polymorphic>TTCTCATATGAGCTTTCCAGTGTTGTTTTTTTTTTGAAAATTGTGTAGATTCCTTTCTTCTTCTATTCAATTTCCCTTTTCAACAACATAGCCATGTTTGAGTTCAGAAAGTTATTTTTTGCAAATAATCCAAAAAAAAATTAAGTGTAAAAATAAATAAATCGTTCCCCAGATAAATGAAATGTTGTTTTTGAAAGCGAAAATACTATGAAACAAAGTTGATCAAATAATTTGAAACTTGACCAGTTTACCGACAAAATATTTGAGCTTTTGCACTGCGAGTTTGAGCCCAGTACAACGCAATTCTTAAATTTTATGCTAGCACAAACTTGAGTCGTTTGACTTCTACATCCATTGGGCCATGAAATCATTGAAAGCCAAATTGTAAGATCACAAGCTACTGATTCTTCCAGATTCGATTATTTCAAAATTTTAGAGTTCTTGCGTTTGGAGCTCGTTGATCCCATAACTTTAAAATTCTGATTTGTTAAATCTATCTWAATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATTGACTGTTACCGCTGAAAAAGGCGCAAGATAGCAGTAAAAATTTGACAGTTATAAACTTTGTAGTATAAAATCACAAGCATTTAATTGGTGGAAAGTTTTTTTTGATATTTCTTTCCGGAACAAAGACACCGTATTTGCTCTAGAAGCCCGCTGAAAAAGTCAACTTTGAACTTAATTATCTCGATTCCTGTGAAAAATATAAAAAAGTATCCAATTAGCTAAATATTGCTGATATCATGATAAAAATTTTATCAGTTGAGATTTTTTTATATCTTTTACAGGATCCGAGAAAAACTGACTTTAAGTTTCTTCATTTTTGTTCACATTTGGCTCAAGTGAATCTTAGCATTCTTTTCGAAAGCCGGGCCGGCCCTGGCAGAGTCAAAATGAAAAATTCTTCGGCCCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTAGAGTTCTTGCGTTTG</pcr_primer_p1>
		<pcr_primer_p2>CCAATTAAATGCTTGTGATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AATTTTAGAGTTCTTGCGTTTGGAGCTCGTTGATCCCATAACTTTAAAATTCTGATTTGTTAAATCTATCTAAATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATTGACTGTTACCGCTGAAAAAGGCGCAAGATAGCAGTAAAAATTTGACAGTTATAAACTTTGTAGTATAAAATCACAAGCATTTAATTGG</canonical_amplicon>
		<polymorphic_amplicon>AATTTTAGAGTTCTTGCGTTTGGAGCTCGTTGATCCCATAACTTTAAAATTCTGATTTGTTAAATCTATCTWAATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATTGACTGTTACCGCTGAAAAAGGCGCAAGATAGCAGTAAAAATTTGACAGTTATAAACTTTGTAGTATAAAATCACAAGCATTTAATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16857</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>239917</contig_pos>
        <strand>+</strand>
        <context>AATCTATCTW[A/G]ATGAATTGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGCTCGTTGATCCCATAACTTTAAAATTCTGATTTGTTAAATCTATCTA</left_flank>
        <right_flank>ATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCATATGAGCTTTCCAGTGTTGTTTTTTTTTTGAAAATTGTGTAGATTCCTTTCTTCTTCTATTCAATTTCCCTTTTCAACAACATAGCCATGTTTGAGTTCAGAAAGTTATTTTTTGCAAATAATCCAAAAAAAAATTAAGTGTAAAAATAAATAAATCGTTCCCCAGATAAATGAAATGTTGTTTTTGAAAGCGAAAATACTATGAAACAAAGTTGATCAAATAATTTGAAACTTGACCAGTTTACCGACAAAATATTTGAGCTTTTGCACTGCGAGTTTGAGCCCAGTACAACGCAATTCTTAAATTTTATGCTAGCACAAACTTGAGTCGTTTGACTTCTACATCCATTGGGCCATGAAATCATTGAAAGCCAAATTGTAAGATCACAAGCTACTGATTCTTCCAGATTCGATTATTTCAAAATTTTAGAGTTCTTGCGTTTGGAGCTCGTTGATCCCATAACTTTAAAATTCTGATTTGTTAAATCTATCTAAATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATTGACTGTTACCGCTGAAAAAGGCGCAAGATAGCAGTAAAAATTTGACAGTTATAAACTTTGTAGTATAAAATCACAAGCATTTAATTGGTGGAAAGTTTTTTTTGATATTTCTTTCCGGAACAAAGACACCGTATTTGCTCTAGAAGCCCGCTGAAAAAGTCAACTTTGAACTTAATTATCTCGATTCCTGTGAAAAATATAAAAAAGTATCCAATTAGCTAAATATTGCTGATATCATGATAAAAATTTTATCAGTTGAGATTTTTTTATATCTTTTACAGGATCCGAGAAAAACTGACTTTAAGTTTCTTCATTTTTGTTCACATTTGGCTCAAGTGAATCTTAGCATTCTTTTCGAAAGCCGGGCCGGCCCTGGCAGAGTCAAAATGAAAAATTCTTCGGCCCAGTT</canonical>
            <polymorphic>TCTCATATGAGCTTTCCAGTGTTGTTTTTTTTTTGAAAATTGTGTAGATTCCTTTCTTCTTCTATTCAATTTCCCTTTTCAACAACATAGCCATGTTTGAGTTCAGAAAGTTATTTTTTGCAAATAATCCAAAAAAAAATTAAGTGTAAAAATAAATAAATCGTTCCCCAGATAAATGAAATGTTGTTTTTGAAAGCGAAAATACTATGAAACAAAGTTGATCAAATAATTTGAAACTTGACCAGTTTACCGACAAAATATTTGAGCTTTTGCACTGCGAGTTTGAGCCCAGTACAACGCAATTCTTAAATTTTATGCTAGCACAAACTTGAGTCGTTTGACTTCTACATCCATTGGGCCATGAAATCATTGAAAGCCAAATTGTAAGATCACAAGCTACTGATTCTTCCAGATTCGATTATTTCAAAATTTTAGAGTTCTTGCGTTTGGAGCTCGTTGATCCCATAACTTTAAAATTCTGATTTGTTAAATCTATCTARATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATTGACTGTTACCGCTGAAAAAGGCGCAAGATAGCAGTAAAAATTTGACAGTTATAAACTTTGTAGTATAAAATCACAAGCATTTAATTGGTGGAAAGTTTTTTTTGATATTTCTTTCCGGAACAAAGACACCGTATTTGCTCTAGAAGCCCGCTGAAAAAGTCAACTTTGAACTTAATTATCTCGATTCCTGTGAAAAATATAAAAAAGTATCCAATTAGCTAAATATTGCTGATATCATGATAAAAATTTTATCAGTTGAGATTTTTTTATATCTTTTACAGGATCCGAGAAAAACTGACTTTAAGTTTCTTCATTTTTGTTCACATTTGGCTCAAGTGAATCTTAGCATTCTTTTCGAAAGCCGGGCCGGCCCTGGCAGAGTCAAAATGAAAAATTCTTCGGCCCAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTAGAGTTCTTGCGTTTG</pcr_primer_p1>
		<pcr_primer_p2>CCAATTAAATGCTTGTGATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AATTTTAGAGTTCTTGCGTTTGGAGCTCGTTGATCCCATAACTTTAAAATTCTGATTTGTTAAATCTATCTAAATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATTGACTGTTACCGCTGAAAAAGGCGCAAGATAGCAGTAAAAATTTGACAGTTATAAACTTTGTAGTATAAAATCACAAGCATTTAATTGG</canonical_amplicon>
		<polymorphic_amplicon>AATTTTAGAGTTCTTGCGTTTGGAGCTCGTTGATCCCATAACTTTAAAATTCTGATTTGTTAAATCTATCTARATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATTGACTGTTACCGCTGAAAAAGGCGCAAGATAGCAGTAAAAATTTGACAGTTATAAACTTTGTAGTATAAAATCACAAGCATTTAATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16859</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>240011</contig_pos>
        <strand>+</strand>
        <context>CCAAAATTGA[C/T]TGTTACCGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATTGA</left_flank>
        <right_flank>TGTTACCGCTGAAAAAGGCGCAAGATAGCAGTAAAAATTTGACAGTTATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTGAGTTCAGAAAGTTATTTTTTGCAAATAATCCAAAAAAAAATTAAGTGTAAAAATAAATAAATCGTTCCCCAGATAAATGAAATGTTGTTTTTGAAAGCGAAAATACTATGAAACAAAGTTGATCAAATAATTTGAAACTTGACCAGTTTACCGACAAAATATTTGAGCTTTTGCACTGCGAGTTTGAGCCCAGTACAACGCAATTCTTAAATTTTATGCTAGCACAAACTTGAGTCGTTTGACTTCTACATCCATTGGGCCATGAAATCATTGAAAGCCAAATTGTAAGATCACAAGCTACTGATTCTTCCAGATTCGATTATTTCAAAATTTTAGAGTTCTTGCGTTTGGAGCTCGTTGATCCCATAACTTTAAAATTCTGATTTGTTAAATCTATCTAAATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATTGACTGTTACCGCTGAAAAAGGCGCAAGATAGCAGTAAAAATTTGACAGTTATAAACTTTGTAGTATAAAATCACAAGCATTTAATTGGTGGAAAGTTTTTTTTGATATTTCTTTCCGGAACAAAGACACCGTATTTGCTCTAGAAGCCCGCTGAAAAAGTCAACTTTGAACTTAATTATCTCGATTCCTGTGAAAAATATAAAAAAGTATCCAATTAGCTAAATATTGCTGATATCATGATAAAAATTTTATCAGTTGAGATTTTTTTATATCTTTTACAGGATCCGAGAAAAACTGACTTTAAGTTTCTTCATTTTTGTTCACATTTGGCTCAAGTGAATCTTAGCATTCTTTTCGAAAGCCGGGCCGGCCCTGGCAGAGTCAAAATGAAAAATTCTTCGGCCCAGTTCCGATTTCGAAATTTCAAAATTTTTTGAAGGACTCATTGAAGAAAAATTTGAAAATTTCAAAGTTTCGACACTGTTTAAAGGGCAGAATATTTT</canonical>
            <polymorphic>GTTTGAGTTCAGAAAGTTATTTTTTGCAAATAATCCAAAAAAAAATTAAGTGTAAAAATAAATAAATCGTTCCCCAGATAAATGAAATGTTGTTTTTGAAAGCGAAAATACTATGAAACAAAGTTGATCAAATAATTTGAAACTTGACCAGTTTACCGACAAAATATTTGAGCTTTTGCACTGCGAGTTTGAGCCCAGTACAACGCAATTCTTAAATTTTATGCTAGCACAAACTTGAGTCGTTTGACTTCTACATCCATTGGGCCATGAAATCATTGAAAGCCAAATTGTAAGATCACAAGCTACTGATTCTTCCAGATTCGATTATTTCAAAATTTTAGAGTTCTTGCGTTTGGAGCTCGTTGATCCCATAACTTTAAAATTCTGATTTGTTAAATCTATCTAAATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATTGAYTGTTACCGCTGAAAAAGGCGCAAGATAGCAGTAAAAATTTGACAGTTATAAACTTTGTAGTATAAAATCACAAGCATTTAATTGGTGGAAAGTTTTTTTTGATATTTCTTTCCGGAACAAAGACACCGTATTTGCTCTAGAAGCCCGCTGAAAAAGTCAACTTTGAACTTAATTATCTCGATTCCTGTGAAAAATATAAAAAAGTATCCAATTAGCTAAATATTGCTGATATCATGATAAAAATTTTATCAGTTGAGATTTTTTTATATCTTTTACAGGATCCGAGAAAAACTGACTTTAAGTTTCTTCATTTTTGTTCACATTTGGCTCAAGTGAATCTTAGCATTCTTTTCGAAAGCCGGGCCGGCCCTGGCAGAGTCAAAATGAAAAATTCTTCGGCCCAGTTCCGATTTCGAAATTTCAAAATTTTTTGAAGGACTCATTGAAGAAAAATTTGAAAATTTCAAAGTTTCGACACTGTTTAAAGGGCAGAATATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 352 83 43 21</canonical_bands>
                <polymorphic_bands>544 352 83 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTTAGAGTTCTTGCGTTTG</pcr_primer_p1>
		<pcr_primer_p2>CCAATTAAATGCTTGTGATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AATTTTAGAGTTCTTGCGTTTGGAGCTCGTTGATCCCATAACTTTAAAATTCTGATTTGTTAAATCTATCTAAATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATTGACTGTTACCGCTGAAAAAGGCGCAAGATAGCAGTAAAAATTTGACAGTTATAAACTTTGTAGTATAAAATCACAAGCATTTAATTGG</canonical_amplicon>
		<polymorphic_amplicon>AATTTTAGAGTTCTTGCGTTTGGAGCTCGTTGATCCCATAACTTTAAAATTCTGATTTGTTAAATCTATCTAAATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATTGAYTGTTACCGCTGAAAAAGGCGCAAGATAGCAGTAAAAATTTGACAGTTATAAACTTTGTAGTATAAAATCACAAGCATTTAATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16860</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>240048</contig_pos>
        <strand>+</strand>
        <context>AGCAGTAAAA[A/T]TTTGACAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTCCAAAATTGACTGTTACCGCTGAAAAAGGCGCAAGATAGCAGTAAAA</left_flank>
        <right_flank>TTTGACAGTTATAAACTTTGTAGTATAAAATCACAAGCATTTAATTGGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAAATTAAGTGTAAAAATAAATAAATCGTTCCCCAGATAAATGAAATGTTGTTTTTGAAAGCGAAAATACTATGAAACAAAGTTGATCAAATAATTTGAAACTTGACCAGTTTACCGACAAAATATTTGAGCTTTTGCACTGCGAGTTTGAGCCCAGTACAACGCAATTCTTAAATTTTATGCTAGCACAAACTTGAGTCGTTTGACTTCTACATCCATTGGGCCATGAAATCATTGAAAGCCAAATTGTAAGATCACAAGCTACTGATTCTTCCAGATTCGATTATTTCAAAATTTTAGAGTTCTTGCGTTTGGAGCTCGTTGATCCCATAACTTTAAAATTCTGATTTGTTAAATCTATCTAAATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATTGACTGTTACCGCTGAAAAAGGCGCAAGATAGCAGTAAAAATTTGACAGTTATAAACTTTGTAGTATAAAATCACAAGCATTTAATTGGTGGAAAGTTTTTTTTGATATTTCTTTCCGGAACAAAGACACCGTATTTGCTCTAGAAGCCCGCTGAAAAAGTCAACTTTGAACTTAATTATCTCGATTCCTGTGAAAAATATAAAAAAGTATCCAATTAGCTAAATATTGCTGATATCATGATAAAAATTTTATCAGTTGAGATTTTTTTATATCTTTTACAGGATCCGAGAAAAACTGACTTTAAGTTTCTTCATTTTTGTTCACATTTGGCTCAAGTGAATCTTAGCATTCTTTTCGAAAGCCGGGCCGGCCCTGGCAGAGTCAAAATGAAAAATTCTTCGGCCCAGTTCCGATTTCGAAATTTCAAAATTTTTTGAAGGACTCATTGAAGAAAAATTTGAAAATTTCAAAGTTTCGACACTGTTTAAAGGGCAGAATATTTTAGGAACACTTTTTTTTGAGGTTTCACTGAACAAATTT</canonical>
            <polymorphic>AAAAAAAATTAAGTGTAAAAATAAATAAATCGTTCCCCAGATAAATGAAATGTTGTTTTTGAAAGCGAAAATACTATGAAACAAAGTTGATCAAATAATTTGAAACTTGACCAGTTTACCGACAAAATATTTGAGCTTTTGCACTGCGAGTTTGAGCCCAGTACAACGCAATTCTTAAATTTTATGCTAGCACAAACTTGAGTCGTTTGACTTCTACATCCATTGGGCCATGAAATCATTGAAAGCCAAATTGTAAGATCACAAGCTACTGATTCTTCCAGATTCGATTATTTCAAAATTTTAGAGTTCTTGCGTTTGGAGCTCGTTGATCCCATAACTTTAAAATTCTGATTTGTTAAATCTATCTAAATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATTGACTGTTACCGCTGAAAAAGGCGCAAGATAGCAGTAAAAWTTTGACAGTTATAAACTTTGTAGTATAAAATCACAAGCATTTAATTGGTGGAAAGTTTTTTTTGATATTTCTTTCCGGAACAAAGACACCGTATTTGCTCTAGAAGCCCGCTGAAAAAGTCAACTTTGAACTTAATTATCTCGATTCCTGTGAAAAATATAAAAAAGTATCCAATTAGCTAAATATTGCTGATATCATGATAAAAATTTTATCAGTTGAGATTTTTTTATATCTTTTACAGGATCCGAGAAAAACTGACTTTAAGTTTCTTCATTTTTGTTCACATTTGGCTCAAGTGAATCTTAGCATTCTTTTCGAAAGCCGGGCCGGCCCTGGCAGAGTCAAAATGAAAAATTCTTCGGCCCAGTTCCGATTTCGAAATTTCAAAATTTTTTGAAGGACTCATTGAAGAAAAATTTGAAAATTTCAAAGTTTCGACACTGTTTAAAGGGCAGAATATTTTAGGAACACTTTTTTTTGAGGTTTCACTGAACAAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>206 177 155 148 119 73 47 27 27 8 8 5</canonical_bands>
                <polymorphic_bands>361 177 148 119 73 47 27 27 8 8 5</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>148 91 90 84 73 73 71 48 47 44 42 39 32 29 27 27 8 8 8 6 5</canonical_bands>
                <polymorphic_bands>148 91 90 86 84 73 73 71 48 47 39 32 29 27 27 8 8 8 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCTCGTTGATCCCATAACT</pcr_primer_p1>
		<pcr_primer_p2>CCGGAAAGAAATATCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>AGCTCGTTGATCCCATAACTTTAAAATTCTGATTTGTTAAATCTATCTAAATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATTGACTGTTACCGCTGAAAAAGGCGCAAGATAGCAGTAAAAATTTGACAGTTATAAACTTTGTAGTATAAAATCACAAGCATTTAATTGGTGGAAAGTTTTTTTTGATATTTCTTTCCGG</canonical_amplicon>
		<polymorphic_amplicon>AGCTCGTTGATCCCATAACTTTAAAATTCTGATTTGTTAAATCTATCTAAATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATTGACTGTTACCGCTGAAAAAGGCGCAAGATAGCAGTAAAAWTTTGACAGTTATAAACTTTGTAGTATAAAATCACAAGCATTTAATTGGTGGAAAGTTTTTTTTGATATTTCTTTCCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16862</snp_id>
        <super_contig>c009701473.Contig1</super_contig>
        <contig_pos>8704</contig_pos>
        <strand></strand>
        <context>TAACGTGTCA[A/G]GCAACATAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTATTGAGTAACCCCCATAATAGAGCCAGAACCTTGGTTAACGTGTCA</left_flank>
        <right_flank>GCAACATAAAAAAGCAAACAAGGAAAACACAGTTACAAAAAGTGTCGATT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATTAATCCAAATGCATACAACCATCCGAGAAAGTCAATTTAATTGAATTTTTAGCAAAAAAATCAAACTTCATTAAGTCAAGGATGAAAAAATTTCGAAATTTTCAAAAAGCGGGCTGGCCATGTGTAATTTTTTCCGGCCCGGCCCGGCCCGCTTTCAGAAAAATCCCGGCCATGGCCCCGCCCAGCCGCCCCCTGTCCGGCCCGCGGGCAGGCCATCTTTAACACAAGTATGGAACAAAGTTACAAGTCATAAAGTGGCCGGGCCGGGCATTGGTTTTTTGGCTGTAACTTTGTTCATAGACAAGACACAGTTTTCCAAATAACATCATTTTGTAACATTCGCCGAGTTCTATCATCTGTAATTTAGTTGGTCAAAAAATATTGATTTTAAAAGAAGCTATGGCAGATCCCGCAAAGGCCCGGTCACAAGTATGCTGATTTGCTTCTTATTGAGTAACCCCCATAATAGAGCCAGAACCTTGGTTAACGTGTCAAGCAACATAAAAAAGCAAACAAGGAAAACACAGTTACAAAAAGTGTCGATTATGAAAGTCTAGAATTCCAATCAAACATGAAGAATATATCCCTCTCCACTTTCACAGAGGCAATCAATCCATCAGATTCTCTCACTATATCGAATGCATTCGTGCAGTTCAGCAAATCGAAATTGAAACAATCGAGATCAAAGTAATTTGAGAATTGAGGACCACTGAATTCTTCGAACTGGAAAACTCTTCCAAGTCTGTAACAACATTATGGTGTTGAGTTCGGTGAATAGAAATAACTTACGGTGCACTTTGAACATATCTAGCTGGTCTCTTCTTTGGATCCCATCTTCTGGTCTGGATTCCATCAAATAATATGTCTTCCCTAATACCATTATAACTAGCAATTATCATTGTTTCCAAGTTGGTATTGTCGCTGTACAACCAGTGTTTCAAACATGAATTCAAATGTTGTGTTGTATTCTCGTGTATATAAATAAAAGCATTTTT</canonical>
            <polymorphic>AATATTAATCCAAATGCATACAACCATCCGAGAAAGTCAATTTAATTGAATTTTTAGCAAAAAAATCAAACTTCATTAAGTCAAGGATGAAAAAATTTCGAAATTTTCAAAAAGCGGGCTGGCCATGTGTAATTTTTTCCGGCCCGGCCCGGCCCGCTTTCAGAAAAATCCCGGCCATGGCCCCGCCCAGCCGCCCCCTGTCCGGCCCGCGGGCAGGCCATCTTTAACACAAGTATGGAACAAAGTTACAAGTCATAAAGTGGCCGGGCCGGGCATTGGTTTTTTGGCTGTAACTTTGTTCATAGACAAGACACAGTTTTCCAAATAACATCATTTTGTAACATTCGCCGAGTTCTATCATCTGTAATTTAGTTGGTCAAAAAATATTGATTTTAAAAGAAGCTATGGCAGATCCCGCAAAGGCCCGGTCACAAGTATGCTGATTTGCTTCTTATTGAGTAACCCCCATAATAGAGCCAGAACCTTGGTTAACGTGTCARGCAACATAAAAAAGCAAACAAGGAAAACACAGTTACAAAAAGTGTCGATTATGAAAGTCTAGAATTCCAATCAAACATGAAGAATATATCCCTCTCCACTTTCACAGAGGCAATCAATCCATCAGATTCTCTCACTATATCGAATGCATTCGTGCAGTTCAGCAAATCGAAATTGAAACAATCGAGATCAAAGTAATTTGAGAATTGAGGACCACTGAATTCTTCGAACTGGAAAACTCTTCCAAGTCTGTAACAACATTATGGTGTTGAGTTCGGTGAATAGAAATAACTTACGGTGCACTTTGAACATATCTAGCTGGTCTCTTCTTTGGATCCCATCTTCTGGTCTGGATTCCATCAAATAATATGTCTTCCCTAATACCATTATAACTAGCAATTATCATTGTTTCCAAGTTGGTATTGTCGCTGTACAACCAGTGTTTCAAACATGAATTCAAATGTTGTGTTGTATTCTCGTGTATATAAATAAAAGCATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTATTGAGTAACCCCCATA</pcr_primer_p1>
		<pcr_primer_p2>CAAATTACTTTGATCTCGATTGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTCTTATTGAGTAACCCCCATAATAGAGCCAGAACCTTGGTTAACGTGTCAAGCAACATAAAAAAGCAAACAAGGAAAACACAGTTACAAAAAGTGTCGATTATGAAAGTCTAGAATTCCAATCAAACATGAAGAATATATCCCTCTCCACTTTCACAGAGGCAATCAATCCATCAGATTCTCTCACTATATCGAATGCATTCGTGCAGTTCAGCAAATCGAAATTGAAACAATCGAGATCAAAGTAATTTG</canonical_amplicon>
		<polymorphic_amplicon>TTCTTATTGAGTAACCCCCATAATAGAGCCAGAACCTTGGTTAACGTGTCARGCAACATAAAAAAGCAAACAAGGAAAACACAGTTACAAAAAGTGTCGATTATGAAAGTCTAGAATTCCAATCAAACATGAAGAATATATCCCTCTCCACTTTCACAGAGGCAATCAATCCATCAGATTCTCTCACTATATCGAATGCATTCGTGCAGTTCAGCAAATCGAAATTGAAACAATCGAGATCAAAGTAATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16863</snp_id>
        <super_contig>c009801795.Contig1</super_contig>
        <contig_pos>22612</contig_pos>
        <strand>+</strand>
        <context>aattttCAAA[A/G]TTCCCAGGGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTACGGTTTTCAGGGTCAAATTTTGTGTTTTTTGACAATTTTCAAA</left_flank>
        <right_flank>TTCCCAGGGCACAATTCTGCCTGTTAAGAAAGTTTTTGACACTTAAAAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGAACATTTTGGAAAATGTGAGGCGAAATGGTCTGAAATCGGCCAAAAGTCATTTTCAGGAGAGTCGATGCACCATGTTGACTAATCCTTGGGGTCATATCTCAAAAACTAGAGGTCCCAGCAAAAAATGGTCAACTAGAAAAATGTAGAGCATACAATTTTACATTAGAGTCAATTTTGAAAATTCAAAAAAATTCAGGTTAAAAACTTTTTGGTAGCTCGAAAGCTGGAAATCCCATTTTTGGCCCCAAAAAAACTCAAAAATGCTCAAAAAACCTCAATTTTCTATTTTCAAGCTCTGGATTGTCGTTTTTGAGCATTGCAACAAAATCAAAAAATAATTAGCCTCAGTGGGGTTTGAACCCGGGTCGTGAGATTGATAGAAAATTCATGAAAAAACCCACTGAGCCATTTGAGCACTTTTTCCAAAATTGTTCTAAAAATTGTTTTTTACGGTTTTCAGGGTCAAATTTTGTGTTTTTTGACAATTTTCAAAATTCCCAGGGCACAATTCTGCCTGTTAAGAAAGTTTTTGACACTTAAAAAACGTAAAAAACCGCTCTATGTTATCAAAAATTTCCTTAAAAATAGTACTAAACAAAGCCGCTTCAAAATACAAGAAACAGCTTGAGAAAAGAGGATTTCGATGTAATTTTTTTTGCAAAATTTGCCGAACTAAATCACAGAAAAAAACCGAGAACCGCCAGACACCTTCTCTCCTAACTATAAGATGTGTTCACCTGTGTGACGGGTGGAGGGGTCAAACTTTACACTAAATCAATCAGAAAAAAGAGAGAGAGAGAGAGACGGGTGACGTGTGCACAACATATACACTTGTTGACCAATAATACATTCTTCCTACCTTTATGTACCTATTCCAACTGTTAGATGGGGAGAGAAGAGGCGTTTTTCTTTCGTTTTTACACTGAAATCTTCGTTTTTGCCTGGTAGCGTGCTCAAAAAACTAACAATTTTTGGCTAAAAATAGCCAAAAATA</canonical>
            <polymorphic>AATTGAACATTTTGGAAAATGTGAGGCGAAATGGTCTGAAATCGGCCAAAAGTCATTTTCAGGAGAGTCGATGCACCATGTTGACTAATCCTTGGGGTCATATCTCAAAAACTAGAGGTCCCAGCAAAAAATGGTCAACTAGAAAAATGTAGAGCATACAATTTTACATTAGAGTCAATTTTGAAAATTCAAAAAAATTCAGGTTAAAAACTTTTTGGTAGCTCGAAAGCTGGAAATCCCATTTTTGGCCCCAAAAAAACTCAAAAATGCTCAAAAAACCTCAATTTTCTATTTTCAAGCTCTGGATTGTCGTTTTTGAGCATTGCAACAAAATCAAAAAATAATTAGCCTCAGTGGGGTTTGAACCCGGGTCGTGAGATTGATAGAAAATTCATGAAAAAACCCACTGAGCCATTTGAGCACTTTTTCCAAAATTGTTCTAAAAATTGTTTTTTACGGTTTTCAGGGTCAAATTTTGTGTTTTTTGACAATTTTCAAARTTCCCAGGGCACAATTCTGCCTGTTAAGAAAGTTTTTGACACTTAAAAAACGTAAAAAACCGCTCTATGTTATCAAAAATTTCCTTAAAAATAGTACTAAACAAAGCCGCTTCAAAATACAAGAAACAGCTTGAGAAAAGAGGATTTCGATGTAATTTTTTTTGCAAAATTTGCCGAACTAAATCACAGAAAAAAACCGAGAACCGCCAGACACCTTCTCTCCTAACTATAAGATGTGTTCACCTGTGTGACGGGTGGAGGGGTCAAACTTTACACTAAATCAATCAGAAAAAAGAGAGAGAGAGAGAGACGGGTGACGTGTGCACAACATATACACTTGTTGACCAATAATACATTCTTCCTACCTTTATGTACCTATTCCAACTGTTAGATGGGGAGAGAAGAGGCGTTTTTCTTTCGTTTTTACACTGAAATCTTCGTTTTTGCCTGGTAGCGTGCTCAAAAAACTAACAATTTTTGGCTAAAAATAGCCAAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>333 193 185 90 83 79 27 10</canonical_bands>
                <polymorphic_bands>333 193 185 106 90 83 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>305 159 87 76 65 60 46 44 28 27 18 17 14 14 12 10 9 9 0</canonical_bands>
                <polymorphic_bands>305 159 87 76 65 60 46 44 28 27 23 18 17 14 12 10 9 0</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAATTTTCACCCAATTTTAT</pcr_primer_p1>
		<pcr_primer_p2>GCGGCTTTGTTTAGTACTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>746</pcr_amplicon_size>
		<canonical_amplicon>AATTCCCAGGGCACAATTCTGCCTGTTAAGAAAGTTTTTGACACTTAAAAAACGTAAAAAACCGCTCTATGTTATCAAAAATTTCCTTAAAAATAGTACTAAACAAAGCCGC</canonical_amplicon>
		<polymorphic_amplicon>ARTTCCCAGGGCACAATTCTGCCTGTTAAGAAAGTTTTTGACACTTAAAAAACGTAAAAAACCGCTCTATGTTATCAAAAATTTCCTTAAAAATAGTACTAAACAAAGCCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16864</snp_id>
        <super_contig>c009801795.Contig1</super_contig>
        <contig_pos>22683</contig_pos>
        <strand>+</strand>
        <context>CGCTCTATGT[A/T]ATCAAAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGTTAAGAAAGTTTTTGACACTTAAAAAACGTAAAAAACCGCTCTATGT</left_flank>
        <right_flank>ATCAAAAATTTCCTTAAAAATAGTACTAAACAAAGCCGCTTCAAAATACA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCACCATGTTGACTAATCCTTGGGGTCATATCTCAAAAACTAGAGGTCCCAGCAAAAAATGGTCAACTAGAAAAATGTAGAGCATACAATTTTACATTAGAGTCAATTTTGAAAATTCAAAAAAATTCAGGTTAAAAACTTTTTGGTAGCTCGAAAGCTGGAAATCCCATTTTTGGCCCCAAAAAAACTCAAAAATGCTCAAAAAACCTCAATTTTCTATTTTCAAGCTCTGGATTGTCGTTTTTGAGCATTGCAACAAAATCAAAAAATAATTAGCCTCAGTGGGGTTTGAACCCGGGTCGTGAGATTGATAGAAAATTCATGAAAAAACCCACTGAGCCATTTGAGCACTTTTTCCAAAATTGTTCTAAAAATTGTTTTTTACGGTTTTCAGGGTCAAATTTTGTGTTTTTTGACAATTTTCAAAATTCCCAGGGCACAATTCTGCCTGTTAAGAAAGTTTTTGACACTTAAAAAACGTAAAAAACCGCTCTATGTTATCAAAAATTTCCTTAAAAATAGTACTAAACAAAGCCGCTTCAAAATACAAGAAACAGCTTGAGAAAAGAGGATTTCGATGTAATTTTTTTTGCAAAATTTGCCGAACTAAATCACAGAAAAAAACCGAGAACCGCCAGACACCTTCTCTCCTAACTATAAGATGTGTTCACCTGTGTGACGGGTGGAGGGGTCAAACTTTACACTAAATCAATCAGAAAAAAGAGAGAGAGAGAGAGACGGGTGACGTGTGCACAACATATACACTTGTTGACCAATAATACATTCTTCCTACCTTTATGTACCTATTCCAACTGTTAGATGGGGAGAGAAGAGGCGTTTTTCTTTCGTTTTTACACTGAAATCTTCGTTTTTGCCTGGTAGCGTGCTCAAAAAACTAACAATTTTTGGCTAAAAATAGCCAAAAATAGCTTCGAAATAGTTGAAAAATGGCCCAAGTGTGACTCAAAAATAGCTCAAAAGTCCCAAAAAATTAGGTAA</canonical>
            <polymorphic>TGCACCATGTTGACTAATCCTTGGGGTCATATCTCAAAAACTAGAGGTCCCAGCAAAAAATGGTCAACTAGAAAAATGTAGAGCATACAATTTTACATTAGAGTCAATTTTGAAAATTCAAAAAAATTCAGGTTAAAAACTTTTTGGTAGCTCGAAAGCTGGAAATCCCATTTTTGGCCCCAAAAAAACTCAAAAATGCTCAAAAAACCTCAATTTTCTATTTTCAAGCTCTGGATTGTCGTTTTTGAGCATTGCAACAAAATCAAAAAATAATTAGCCTCAGTGGGGTTTGAACCCGGGTCGTGAGATTGATAGAAAATTCATGAAAAAACCCACTGAGCCATTTGAGCACTTTTTCCAAAATTGTTCTAAAAATTGTTTTTTACGGTTTTCAGGGTCAAATTTTGTGTTTTTTGACAATTTTCAAAATTCCCAGGGCACAATTCTGCCTGTTAAGAAAGTTTTTGACACTTAAAAAACGTAAAAAACCGCTCTATGTWATCAAAAATTTCCTTAAAAATAGTACTAAACAAAGCCGCTTCAAAATACAAGAAACAGCTTGAGAAAAGAGGATTTCGATGTAATTTTTTTTGCAAAATTTGCCGAACTAAATCACAGAAAAAAACCGAGAACCGCCAGACACCTTCTCTCCTAACTATAAGATGTGTTCACCTGTGTGACGGGTGGAGGGGTCAAACTTTACACTAAATCAATCAGAAAAAAGAGAGAGAGAGAGAGACGGGTGACGTGTGCACAACATATACACTTGTTGACCAATAATACATTCTTCCTACCTTTATGTACCTATTCCAACTGTTAGATGGGGAGAGAAGAGGCGTTTTTCTTTCGTTTTTACACTGAAATCTTCGTTTTTGCCTGGTAGCGTGCTCAAAAAACTAACAATTTTTGGCTAAAAATAGCCAAAAATAGCTTCGAAATAGTTGAAAAATGGCCCAAGTGTGACTCAAAAATAGCTCAAAAGTCCCAAAAAATTAGGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAATTCTGCCTGTTAAGAAAG</pcr_primer_p1>
		<pcr_primer_p2>CACACAGGTGAACACATCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>ACAATTCTGCCTGTTAAGAAAGTTTTTGACACTTAAAAAACGTAAAAAACCGCTCTATGTTATCAAAAATTTCCTTAAAAATAGTACTAAACAAAGCCGCTTCAAAATACAAGAAACAGCTTGAGAAAAGAGGATTTCGATGTAATTTTTTTTGCAAAATTTGCCGAACTAAATCACAGAAAAAAACCGAGAACCGCCAGACACCTTCTCTCCTAACTATAAGATGTGTTCACCTGTGTG</canonical_amplicon>
		<polymorphic_amplicon>ACAATTCTGCCTGTTAAGAAAGTTTTTGACACTTAAAAAACGTAAAAAACCGCTCTATGTWATCAAAAATTTCCTTAAAAATAGTACTAAACAAAGCCGCTTCAAAATACAAGAAACAGCTTGAGAAAAGAGGATTTCGATGTAATTTTTTTTGCAAAATTTGCCGAACTAAATCACAGAAAAAAACCGAGAACCGCCAGACACCTTCTCTCCTAACTATAAGATGTGTTCACCTGTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16865</snp_id>
        <super_contig>c009801795.Contig1</super_contig>
        <contig_pos>22768</contig_pos>
        <strand>+</strand>
        <context>TTCGATGTAA[A/T]TTTTTTTGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCCGCTTCAAAATACAAGAAACAGCTTGAGAAAAGAGGATTTCGATGTAA</left_flank>
        <right_flank>TTTTTTTGCAAAATTTGCCGAACTAAATCACAGAAAAAAACCGAGAACCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACAATTTTACATTAGAGTCAATTTTGAAAATTCAAAAAAATTCAGGTTAAAAACTTTTTGGTAGCTCGAAAGCTGGAAATCCCATTTTTGGCCCCAAAAAAACTCAAAAATGCTCAAAAAACCTCAATTTTCTATTTTCAAGCTCTGGATTGTCGTTTTTGAGCATTGCAACAAAATCAAAAAATAATTAGCCTCAGTGGGGTTTGAACCCGGGTCGTGAGATTGATAGAAAATTCATGAAAAAACCCACTGAGCCATTTGAGCACTTTTTCCAAAATTGTTCTAAAAATTGTTTTTTACGGTTTTCAGGGTCAAATTTTGTGTTTTTTGACAATTTTCAAAATTCCCAGGGCACAATTCTGCCTGTTAAGAAAGTTTTTGACACTTAAAAAACGTAAAAAACCGCTCTATGTTATCAAAAATTTCCTTAAAAATAGTACTAAACAAAGCCGCTTCAAAATACAAGAAACAGCTTGAGAAAAGAGGATTTCGATGTAATTTTTTTTGCAAAATTTGCCGAACTAAATCACAGAAAAAAACCGAGAACCGCCAGACACCTTCTCTCCTAACTATAAGATGTGTTCACCTGTGTGACGGGTGGAGGGGTCAAACTTTACACTAAATCAATCAGAAAAAAGAGAGAGAGAGAGAGACGGGTGACGTGTGCACAACATATACACTTGTTGACCAATAATACATTCTTCCTACCTTTATGTACCTATTCCAACTGTTAGATGGGGAGAGAAGAGGCGTTTTTCTTTCGTTTTTACACTGAAATCTTCGTTTTTGCCTGGTAGCGTGCTCAAAAAACTAACAATTTTTGGCTAAAAATAGCCAAAAATAGCTTCGAAATAGTTGAAAAATGGCCCAAGTGTGACTCAAAAATAGCTCAAAAGTCCCAAAAAATTAGGTAAAATCCATGGAAAAAAATGATCAAAAAACAGCTCAAAAATGGCACAAAATGACCTTTCTAGCTTCCAAATTTGTGCCAATTTATCT</canonical>
            <polymorphic>TACAATTTTACATTAGAGTCAATTTTGAAAATTCAAAAAAATTCAGGTTAAAAACTTTTTGGTAGCTCGAAAGCTGGAAATCCCATTTTTGGCCCCAAAAAAACTCAAAAATGCTCAAAAAACCTCAATTTTCTATTTTCAAGCTCTGGATTGTCGTTTTTGAGCATTGCAACAAAATCAAAAAATAATTAGCCTCAGTGGGGTTTGAACCCGGGTCGTGAGATTGATAGAAAATTCATGAAAAAACCCACTGAGCCATTTGAGCACTTTTTCCAAAATTGTTCTAAAAATTGTTTTTTACGGTTTTCAGGGTCAAATTTTGTGTTTTTTGACAATTTTCAAAATTCCCAGGGCACAATTCTGCCTGTTAAGAAAGTTTTTGACACTTAAAAAACGTAAAAAACCGCTCTATGTTATCAAAAATTTCCTTAAAAATAGTACTAAACAAAGCCGCTTCAAAATACAAGAAACAGCTTGAGAAAAGAGGATTTCGATGTAAWTTTTTTTGCAAAATTTGCCGAACTAAATCACAGAAAAAAACCGAGAACCGCCAGACACCTTCTCTCCTAACTATAAGATGTGTTCACCTGTGTGACGGGTGGAGGGGTCAAACTTTACACTAAATCAATCAGAAAAAAGAGAGAGAGAGAGAGACGGGTGACGTGTGCACAACATATACACTTGTTGACCAATAATACATTCTTCCTACCTTTATGTACCTATTCCAACTGTTAGATGGGGAGAGAAGAGGCGTTTTTCTTTCGTTTTTACACTGAAATCTTCGTTTTTGCCTGGTAGCGTGCTCAAAAAACTAACAATTTTTGGCTAAAAATAGCCAAAAATAGCTTCGAAATAGTTGAAAAATGGCCCAAGTGTGACTCAAAAATAGCTCAAAAGTCCCAAAAAATTAGGTAAAATCCATGGAAAAAAATGATCAAAAAACAGCTCAAAAATGGCACAAAATGACCTTTCTAGCTTCCAAATTTGTGCCAATTTATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>305 89 87 76 76 65 60 46 44 27 18 17 14 14 12 10 10 9 9 9 3</canonical_bands>
                <polymorphic_bands>305 90 89 87 76 65 60 46 44 27 18 17 14 12 10 10 9 9 9 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAATTCTGCCTGTTAAGAAAG</pcr_primer_p1>
		<pcr_primer_p2>CACACAGGTGAACACATCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>ACAATTCTGCCTGTTAAGAAAGTTTTTGACACTTAAAAAACGTAAAAAACCGCTCTATGTTATCAAAAATTTCCTTAAAAATAGTACTAAACAAAGCCGCTTCAAAATACAAGAAACAGCTTGAGAAAAGAGGATTTCGATGTAATTTTTTTTGCAAAATTTGCCGAACTAAATCACAGAAAAAAACCGAGAACCGCCAGACACCTTCTCTCCTAACTATAAGATGTGTTCACCTGTGTG</canonical_amplicon>
		<polymorphic_amplicon>ACAATTCTGCCTGTTAAGAAAGTTTTTGACACTTAAAAAACGTAAAAAACCGCTCTATGTTATCAAAAATTTCCTTAAAAATAGTACTAAACAAAGCCGCTTCAAAATACAAGAAACAGCTTGAGAAAAGAGGATTTCGATGTAAWTTTTTTTGCAAAATTTGCCGAACTAAATCACAGAAAAAAACCGAGAACCGCCAGACACCTTCTCTCCTAACTATAAGATGTGTTCACCTGTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16866</snp_id>
        <super_contig>c009801795.Contig1</super_contig>
        <contig_pos>22835</contig_pos>
        <strand>+</strand>
        <context>ACCTTCTCTC[C/T]TAACTATAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCGAACTAAATCACAGAAAAAAACCGAGAACCGCCAGACACCTTCTCTC</left_flank>
        <right_flank>TAACTATAAGATGTGTTCACCTGTGTGACGGGTGGAGGGGTCAAACTTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAAAGCTGGAAATCCCATTTTTGGCCCCAAAAAAACTCAAAAATGCTCAAAAAACCTCAATTTTCTATTTTCAAGCTCTGGATTGTCGTTTTTGAGCATTGCAACAAAATCAAAAAATAATTAGCCTCAGTGGGGTTTGAACCCGGGTCGTGAGATTGATAGAAAATTCATGAAAAAACCCACTGAGCCATTTGAGCACTTTTTCCAAAATTGTTCTAAAAATTGTTTTTTACGGTTTTCAGGGTCAAATTTTGTGTTTTTTGACAATTTTCAAAATTCCCAGGGCACAATTCTGCCTGTTAAGAAAGTTTTTGACACTTAAAAAACGTAAAAAACCGCTCTATGTTATCAAAAATTTCCTTAAAAATAGTACTAAACAAAGCCGCTTCAAAATACAAGAAACAGCTTGAGAAAAGAGGATTTCGATGTAATTTTTTTTGCAAAATTTGCCGAACTAAATCACAGAAAAAAACCGAGAACCGCCAGACACCTTCTCTCCTAACTATAAGATGTGTTCACCTGTGTGACGGGTGGAGGGGTCAAACTTTACACTAAATCAATCAGAAAAAAGAGAGAGAGAGAGAGACGGGTGACGTGTGCACAACATATACACTTGTTGACCAATAATACATTCTTCCTACCTTTATGTACCTATTCCAACTGTTAGATGGGGAGAGAAGAGGCGTTTTTCTTTCGTTTTTACACTGAAATCTTCGTTTTTGCCTGGTAGCGTGCTCAAAAAACTAACAATTTTTGGCTAAAAATAGCCAAAAATAGCTTCGAAATAGTTGAAAAATGGCCCAAGTGTGACTCAAAAATAGCTCAAAAGTCCCAAAAAATTAGGTAAAATCCATGGAAAAAAATGATCAAAAAACAGCTCAAAAATGGCACAAAATGACCTTTCTAGCTTCCAAATTTGTGCCAATTTATCTCAATTTCCATAAAAGATATCAAAAAGTGGGGAACTGATAAAATGTTTATCATGTTAACAACTACATT</canonical>
            <polymorphic>CGAAAGCTGGAAATCCCATTTTTGGCCCCAAAAAAACTCAAAAATGCTCAAAAAACCTCAATTTTCTATTTTCAAGCTCTGGATTGTCGTTTTTGAGCATTGCAACAAAATCAAAAAATAATTAGCCTCAGTGGGGTTTGAACCCGGGTCGTGAGATTGATAGAAAATTCATGAAAAAACCCACTGAGCCATTTGAGCACTTTTTCCAAAATTGTTCTAAAAATTGTTTTTTACGGTTTTCAGGGTCAAATTTTGTGTTTTTTGACAATTTTCAAAATTCCCAGGGCACAATTCTGCCTGTTAAGAAAGTTTTTGACACTTAAAAAACGTAAAAAACCGCTCTATGTTATCAAAAATTTCCTTAAAAATAGTACTAAACAAAGCCGCTTCAAAATACAAGAAACAGCTTGAGAAAAGAGGATTTCGATGTAATTTTTTTTGCAAAATTTGCCGAACTAAATCACAGAAAAAAACCGAGAACCGCCAGACACCTTCTCTCYTAACTATAAGATGTGTTCACCTGTGTGACGGGTGGAGGGGTCAAACTTTACACTAAATCAATCAGAAAAAAGAGAGAGAGAGAGAGACGGGTGACGTGTGCACAACATATACACTTGTTGACCAATAATACATTCTTCCTACCTTTATGTACCTATTCCAACTGTTAGATGGGGAGAGAAGAGGCGTTTTTCTTTCGTTTTTACACTGAAATCTTCGTTTTTGCCTGGTAGCGTGCTCAAAAAACTAACAATTTTTGGCTAAAAATAGCCAAAAATAGCTTCGAAATAGTTGAAAAATGGCCCAAGTGTGACTCAAAAATAGCTCAAAAGTCCCAAAAAATTAGGTAAAATCCATGGAAAAAAATGATCAAAAAACAGCTCAAAAATGGCACAAAATGACCTTTCTAGCTTCCAAATTTGTGCCAATTTATCTCAATTTCCATAAAAGATATCAAAAAGTGGGGAACTGATAAAATGTTTATCATGTTAACAACTACATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATACAAGAAACAGCTTGAGA</pcr_primer_p1>
		<pcr_primer_p2>GGAAGAATGTATTATTGGTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAATACAAGAAACAGCTTGAGAAAAGAGGATTTCGATGTAATTTTTTTTGCAAAATTTGCCGAACTAAATCACAGAAAAAAACCGAGAACCGCCAGACACCTTCTCTCCTAACTATAAGATGTGTTCACCTGTGTGACGGGTGGAGGGGTCAAACTTTACACTAAATCAATCAGAAAAAAGAGAGAGAGAGAGAGACGGGTGACGTGTGCACAACATATACACTTGTTGACCAATAATACATTCTTCC</canonical_amplicon>
		<polymorphic_amplicon>AAAATACAAGAAACAGCTTGAGAAAAGAGGATTTCGATGTAATTTTTTTTGCAAAATTTGCCGAACTAAATCACAGAAAAAAACCGAGAACCGCCAGACACCTTCTCTCYTAACTATAAGATGTGTTCACCTGTGTGACGGGTGGAGGGGTCAAACTTTACACTAAATCAATCAGAAAAAAGAGAGAGAGAGAGAGACGGGTGACGTGTGCACAACATATACACTTGTTGACCAATAATACATTCTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16868</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>13063</contig_pos>
        <strand>+</strand>
        <context>TCACAATTGA[A/C]ATCAATCCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACAATCAGTTGTTACGCCTATTCAACAGAAGACTCAAAGTTCACAATTGA</left_flank>
        <right_flank>ATCAATCCTTCGTTTTTCTCTTTCTCTTCCTCCACACATTCCTCTCGCTT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACAAATAATGCTGGACTGAACTGGAAACTGAACTGGAAATAGTCTTCCGCCGAAATATGACTATTTTTGAAAAATGATCTTCTAATCTTTTTATGATGTTTTCTTGTGTTCTTTATGTATATACTTCAGCTTGAAAATAATTGTTTTGATATCAGAAAACAATTATTTTCCACTTTTGTTCAAATGTTTCGGATCCACTATCCGTGGGAAAATATAGGTCAATTATCATTTTAAAATTGATTTTCAGAAAAAGTATTCTTTGCAACAAAACCAGTTGTTATTTTGTTTTTCGCTCCTCTATTCGTTTTCTGAACACTGATGTCTTGCAAGAAGTGTTGCCCTCTCTCTGTGGCTACCGAGCGTGGTCGACGCTCATTGAAATTCGAATCATGTTCCTGAAATGGGAAAGCCCCTAGAAACGTATTCCTATCAACGCATGGGCATTGAAACAATCAGTTGTTACGCCTATTCAACAGAAGACTCAAAGTTCACAATTGACATCAATCCTTCGTTTTTCTCTTTCTCTTCCTCCACACATTCCTCTCGCTTGTTTTCGTTTTCAATGTTTCGTTTTTTTTTAAACTAGACGCACTTTTTTCATGACTCCTGTTCTATCTCCCAAACTGTAAGGATAATGTACTTTGTAATGAGTCTTTAATTCAATATTTCGAAACTGAGCTGCAAGAATTTCGTTGGTTTCGGGAGACCTATTCTGTAGTTACAAAACATCGGAGCTGTGGAAGAGAAACGCCGCTGGCCGTGGCCGAAGGTCCCACAACGACAACTACCGTAACCTAAAAAGTGCATATTGTTGGATTACGGTAGTTGTCGTTGTGGGACATTCGGGCATGGCCCCCAGTGTTCCTAATCAAACCTGATCTGCAAGAAAGTCGTAGTGCGAGACTGAGATTTTCTAATTTCTTTTTATTACATTTTATTTCGACTGGGAAGGAAATAGACAAACTTTTCAATGCTTCAATAGGCTAACTAGTTAAAGAT</canonical>
            <polymorphic>CACAAATAATGCTGGACTGAACTGGAAACTGAACTGGAAATAGTCTTCCGCCGAAATATGACTATTTTTGAAAAATGATCTTCTAATCTTTTTATGATGTTTTCTTGTGTTCTTTATGTATATACTTCAGCTTGAAAATAATTGTTTTGATATCAGAAAACAATTATTTTCCACTTTTGTTCAAATGTTTCGGATCCACTATCCGTGGGAAAATATAGGTCAATTATCATTTTAAAATTGATTTTCAGAAAAAGTATTCTTTGCAACAAAACCAGTTGTTATTTTGTTTTTCGCTCCTCTATTCGTTTTCTGAACACTGATGTCTTGCAAGAAGTGTTGCCCTCTCTCTGTGGCTACCGAGCGTGGTCGACGCTCATTGAAATTCGAATCATGTTCCTGAAATGGGAAAGCCCCTAGAAACGTATTCCTATCAACGCATGGGCATTGAAACAATCAGTTGTTACGCCTATTCAACAGAAGACTCAAAGTTCACAATTGAMATCAATCCTTCGTTTTTCTCTTTCTCTTCCTCCACACATTCCTCTCGCTTGTTTTCGTTTTCAATGTTTCGTTTTTTTTTAAACTAGACGCACTTTTTTCATGACTCCTGTTCTATCTCCCAAACTGTAAGGATAATGTACTTTGTAATGAGTCTTTAATTCAATATTTCGAAACTGAGCTGCAAGAATTTCGTTGGTTTCGGGAGACCTATTCTGTAGTTACAAAACATCGGAGCTGTGGAAGAGAAACGCCGCTGGCCGTGGCCGAAGGTCCCACAACGACAACTACCGTAACCTAAAAAGTGCATATTGTTGGATTACGGTAGTTGTCGTTGTGGGACATTCGGGCATGGCCCCCAGTGTTCCTAATCAAACCTGATCTGCAAGAAAGTCGTAGTGCGAGACTGAGATTTTCTAATTTCTTTTTATTACATTTTATTTCGACTGGGAAGGAAATAGACAAACTTTTCAATGCTTCAATAGGCTAACTAGTTAAAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTGAAATTCGAATCATGT</pcr_primer_p1>
		<pcr_primer_p2>GAGATAGAACAGGAGTCATGAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCATTGAAATTCGAATCATGTTCCTGAAATGGGAAAGCCCCTAGAAACGTATTCCTATCAACGCATGGGCATTGAAACAATCAGTTGTTACGCCTATTCAACAGAAGACTCAAAGTTCACAATTGACATCAATCCTTCGTTTTTCTCTTTCTCTTCCTCCACACATTCCTCTCGCTTGTTTTCGTTTTCAATGTTTCGTTTTTTTTTAAACTAGACGCACTTTTTTCATGACTCCTGTTCTATCTC</canonical_amplicon>
		<polymorphic_amplicon>TCATTGAAATTCGAATCATGTTCCTGAAATGGGAAAGCCCCTAGAAACGTATTCCTATCAACGCATGGGCATTGAAACAATCAGTTGTTACGCCTATTCAACAGAAGACTCAAAGTTCACAATTGAMATCAATCCTTCGTTTTTCTCTTTCTCTTCCTCCACACATTCCTCTCGCTTGTTTTCGTTTTCAATGTTTCGTTTTTTTTTAAACTAGACGCACTTTTTTCATGACTCCTGTTCTATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16869</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>14987</contig_pos>
        <strand>+</strand>
        <context>TTCAAATCAC[A/T]AGGGAATCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACGAAAAATGGTTAAATTCAGAAAGGTAAATGCTGTCAATTCAAATCAC</left_flank>
        <right_flank>AGGGAATCATCCTCTGTCTAAAAAGGAGTCATTTGTTTTCTTTTTTCAGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCACCAGTTGGAATATCTCCTGCTAGTCTCACAAATGGAGCACTTGCCGGAGTATCGGCCGCATCAATGGCCAATATCATGCAGAATCCAGGATTCGCGAATCTGATCCACCAAGCTCTCCGTAATGTGAGTTATCATTAATATATCATTAATATGAAACCATCTGACTTCGTTCCCTGGTGTACTTGAAAATGACGTGAACACAATAAGCGTATGATGGTGATGATCTAGAGACTAGCATAAAAATAGAAACCGAAAATGGGCATATACAGAAAAAAATAGGGGAGGAGTAAAAGAGAAAAGCGAGAGAAAGAAAACCGGTTGAGAGAGAATATTAGATTTTTTTTTCTCAAACAAGTGTATGAGGTCAAGACACTTTGATTACTTTCTTCTCGAAATTGATATTTCATCTCACCGAATTTCGGTTTGATTTTCTGAACCAATGTTTCAACGAAAAATGGTTAAATTCAGAAAGGTAAATGCTGTCAATTCAAATCACAAGGGAATCATCCTCTGTCTAAAAAGGAGTCATTTGTTTTCTTTTTTCAGCAACTTGAAACACAAGCAGTGGCTCAACAGTTAGCAGCTAATCCACAATATCAACTCAATGGAACTTCTTCAGCTGCTTCGTTACTTCTTGCTCCACAAGCAGCGGTTGCTCTTCCACCACAGCCTACTGTAGTTGTGAACGGTGTTGCTGAAACCATAAGTATGCTTTTTTATAGTTTTCAACAACAGTTTTCCTCGTTGCAGAACACATAACAGAACTTGCTCATCGACACTTCCAGACAGCAAATTACGCAGATGCTGAAAAGCTTTGTAATTCAGTTTTCCAAACCGATCCTAACAATATACCCATTCTACTCTTGCTCTCTGCAATCAATTTTCAAGTGAAGAATCTGGAAAAGTTAGTTTTTTTCATTTAATTGTAAAAATCGTCAAATTATTAATTTACAGATCTATGCAGTTCTCGAAGCTGGCTATAAAAGTGAATAGTAAT</canonical>
            <polymorphic>GCACCAGTTGGAATATCTCCTGCTAGTCTCACAAATGGAGCACTTGCCGGAGTATCGGCCGCATCAATGGCCAATATCATGCAGAATCCAGGATTCGCGAATCTGATCCACCAAGCTCTCCGTAATGTGAGTTATCATTAATATATCATTAATATGAAACCATCTGACTTCGTTCCCTGGTGTACTTGAAAATGACGTGAACACAATAAGCGTATGATGGTGATGATCTAGAGACTAGCATAAAAATAGAAACCGAAAATGGGCATATACAGAAAAAAATAGGGGAGGAGTAAAAGAGAAAAGCGAGAGAAAGAAAACCGGTTGAGAGAGAATATTAGATTTTTTTTTCTCAAACAAGTGTATGAGGTCAAGACACTTTGATTACTTTCTTCTCGAAATTGATATTTCATCTCACCGAATTTCGGTTTGATTTTCTGAACCAATGTTTCAACGAAAAATGGTTAAATTCAGAAAGGTAAATGCTGTCAATTCAAATCACWAGGGAATCATCCTCTGTCTAAAAAGGAGTCATTTGTTTTCTTTTTTCAGCAACTTGAAACACAAGCAGTGGCTCAACAGTTAGCAGCTAATCCACAATATCAACTCAATGGAACTTCTTCAGCTGCTTCGTTACTTCTTGCTCCACAAGCAGCGGTTGCTCTTCCACCACAGCCTACTGTAGTTGTGAACGGTGTTGCTGAAACCATAAGTATGCTTTTTTATAGTTTTCAACAACAGTTTTCCTCGTTGCAGAACACATAACAGAACTTGCTCATCGACACTTCCAGACAGCAAATTACGCAGATGCTGAAAAGCTTTGTAATTCAGTTTTCCAAACCGATCCTAACAATATACCCATTCTACTCTTGCTCTCTGCAATCAATTTTCAAGTGAAGAATCTGGAAAAGTTAGTTTTTTTCATTTAATTGTAAAAATCGTCAAATTATTAATTTACAGATCTATGCAGTTCTCGAAGCTGGCTATAAAAGTGAATAGTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGAGGTCAAGACACTTTGATT</pcr_primer_p1>
		<pcr_primer_p2>CATTGAGTTGATATTGTGGATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATGAGGTCAAGACACTTTGATTACTTTCTTCTCGAAATTGATATTTCATCTCACCGAATTTCGGTTTGATTTTCTGAACCAATGTTTCAACGAAAAATGGTTAAATTCAGAAAGGTAAATGCTGTCAATTCAAATCACAAGGGAATCATCCTCTGTCTAAAAAGGAGTCATTTGTTTTCTTTTTTCAGCAACTTGAAACACAAGCAGTGGCTCAACAGTTAGCAGCTAATCCACAATATCAACTCAATG</canonical_amplicon>
		<polymorphic_amplicon>TATGAGGTCAAGACACTTTGATTACTTTCTTCTCGAAATTGATATTTCATCTCACCGAATTTCGGTTTGATTTTCTGAACCAATGTTTCAACGAAAAATGGTTAAATTCAGAAAGGTAAATGCTGTCAATTCAAATCACWAGGGAATCATCCTCTGTCTAAAAAGGAGTCATTTGTTTTCTTTTTTCAGCAACTTGAAACACAAGCAGTGGCTCAACAGTTAGCAGCTAATCCACAATATCAACTCAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16870</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>14731</contig_pos>
        <strand>+</strand>
        <context>ACTAGCATAA[A/G]AATAGAAACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACGTGAACACAATAAGCGTATGATGGTGATGATCTAGAGACTAGCATAA</left_flank>
        <right_flank>AATAGAAACCGAAAATGGGCATATACAGAAAAAAATAGGGGAGGAGTAAA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACAATAAGGTACAGTTTTCTAGTCTATAACTTATATAAATCTAAATTTGTATAGCATAATCTAATTTTGCTCAAAACTTTATTGGACGAAATGATTTTTTTTTCATAAAAACTAAATAAACAAAAATATGACTCTTAAAATCTTAAAAGAACGTTTTGAAAGTTTCAGGTAATAGGGCGACAGGAGAACAGTTAGCTCCCGGAGCAGTACCAGCTCACCCGGTACTTGCTCCGGTTATTGCCCCAGGAGGAGCCGCACCAGTTGGAATATCTCCTGCTAGTCTCACAAATGGAGCACTTGCCGGAGTATCGGCCGCATCAATGGCCAATATCATGCAGAATCCAGGATTCGCGAATCTGATCCACCAAGCTCTCCGTAATGTGAGTTATCATTAATATATCATTAATATGAAACCATCTGACTTCGTTCCCTGGTGTACTTGAAAATGACGTGAACACAATAAGCGTATGATGGTGATGATCTAGAGACTAGCATAAAAATAGAAACCGAAAATGGGCATATACAGAAAAAAATAGGGGAGGAGTAAAAGAGAAAAGCGAGAGAAAGAAAACCGGTTGAGAGAGAATATTAGATTTTTTTTTCTCAAACAAGTGTATGAGGTCAAGACACTTTGATTACTTTCTTCTCGAAATTGATATTTCATCTCACCGAATTTCGGTTTGATTTTCTGAACCAATGTTTCAACGAAAAATGGTTAAATTCAGAAAGGTAAATGCTGTCAATTCAAATCACAAGGGAATCATCCTCTGTCTAAAAAGGAGTCATTTGTTTTCTTTTTTCAGCAACTTGAAACACAAGCAGTGGCTCAACAGTTAGCAGCTAATCCACAATATCAACTCAATGGAACTTCTTCAGCTGCTTCGTTACTTCTTGCTCCACAAGCAGCGGTTGCTCTTCCACCACAGCCTACTGTAGTTGTGAACGGTGTTGCTGAAACCATAAGTATGCTTTTTTATAGTTTTCAACAACAGTTTTCC</canonical>
            <polymorphic>GTACAATAAGGTACAGTTTTCTAGTCTATAACTTATATAAATCTAAATTTGTATAGCATAATCTAATTTTGCTCAAAACTTTATTGGACGAAATGATTTTTTTTTCATAAAAACTAAATAAACAAAAATATGACTCTTAAAATCTTAAAAGAACGTTTTGAAAGTTTCAGGTAATAGGGCGACAGGAGAACAGTTAGCTCCCGGAGCAGTACCAGCTCACCCGGTACTTGCTCCGGTTATTGCCCCAGGAGGAGCCGCACCAGTTGGAATATCTCCTGCTAGTCTCACAAATGGAGCACTTGCCGGAGTATCGGCCGCATCAATGGCCAATATCATGCAGAATCCAGGATTCGCGAATCTGATCCACCAAGCTCTCCGTAATGTGAGTTATCATTAATATATCATTAATATGAAACCATCTGACTTCGTTCCCTGGTGTACTTGAAAATGACGTGAACACAATAAGCGTATGATGGTGATGATCTAGAGACTAGCATAARAATAGAAACCGAAAATGGGCATATACAGAAAAAAATAGGGGAGGAGTAAAAGAGAAAAGCGAGAGAAAGAAAACCGGTTGAGAGAGAATATTAGATTTTTTTTTCTCAAACAAGTGTATGAGGTCAAGACACTTTGATTACTTTCTTCTCGAAATTGATATTTCATCTCACCGAATTTCGGTTTGATTTTCTGAACCAATGTTTCAACGAAAAATGGTTAAATTCAGAAAGGTAAATGCTGTCAATTCAAATCACAAGGGAATCATCCTCTGTCTAAAAAGGAGTCATTTGTTTTCTTTTTTCAGCAACTTGAAACACAAGCAGTGGCTCAACAGTTAGCAGCTAATCCACAATATCAACTCAATGGAACTTCTTCAGCTGCTTCGTTACTTCTTGCTCCACAAGCAGCGGTTGCTCTTCCACCACAGCCTACTGTAGTTGTGAACGGTGTTGCTGAAACCATAAGTATGCTTTTTTATAGTTTTCAACAACAGTTTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTAATATGAAACCATCTGACTT</pcr_primer_p1>
		<pcr_primer_p2>TCGAGAAGAAAGTAATCAAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTAATATGAAACCATCTGACTTCGTTCCCTGGTGTACTTGAAAATGACGTGAACACAATAAGCGTATGATGGTGATGATCTAGAGACTAGCATAAAAATAGAAACCGAAAATGGGCATATACAGAAAAAAATAGGGGAGGAGTAAAAGAGAAAAGCGAGAGAAAGAAAACCGGTTGAGAGAGAATATTAGATTTTTTTTTCTCAAACAAGTGTATGAGGTCAAGACACTTTGATTACTTTCTTCTCGA</canonical_amplicon>
		<polymorphic_amplicon>CATTAATATGAAACCATCTGACTTCGTTCCCTGGTGTACTTGAAAATGACGTGAACACAATAAGCGTATGATGGTGATGATCTAGAGACTAGCATAARAATAGAAACCGAAAATGGGCATATACAGAAAAAAATAGGGGAGGAGTAAAAGAGAAAAGCGAGAGAAAGAAAACCGGTTGAGAGAGAATATTAGATTTTTTTTTCTCAAACAAGTGTATGAGGTCAAGACACTTTGATTACTTTCTTCTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16871</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>48832</contig_pos>
        <strand>+</strand>
        <context>CTTTTGCCTT[C/T]TGTCTTTTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCTTCGTGAAGTCTTTTGTCATCTCCACCACCTGTGTTCTTTTGCCTT</left_flank>
        <right_flank>TGTCTTTTGTCTCCTGTTTTCTGAATCATATATTTTCTTACTCGACGTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTCGTTTCATCAGCTCTCACCAGACCTACTATGATGAGGAAATTGAGTTCAAACTTCCGGGTCTGGGATTCTCAAAAAACACGTGGGGTGAGAAAGTTTGAGGTATACGATCAGCTAGTTATATAGATCAGAGATGTTAGAAATTCTGACTTCCGAATTCCCAATTCGAAAACTAGCTTCCGACTTCCGACCCTTGAACTCCGCCATAGAATTTTTGCAAAAAAAATGCAAGATTTGTTCGTTTTTGAGCAGAAAAATCCAAAAATGTCGAAATTAGCCCCAATATCATAATTTTATGCTCCGGGATATTTAACAGAACAAGCTAGCTTCTTCTTAGTTTACTTCCGACTTCCGAGTTCAAAAGTTGACTTCCTGAAATCTCTGAAATGTACATCTCCCGGGAATCTCATTTTTTCTATCCGGAATTCTCTTCTTGAACTTCCTTTCTCTTCGTGAAGTCTTTTGTCATCTCCACCACCTGTGTTCTTTTGCCTTCTGTCTTTTGTCTCCTGTTTTCTGAATCATATATTTTCTTACTCGACGTCAATCTGTTCACCGACAAATTGCATATTTTCCCAGGCTCTCTGATCACAAGAAAGTTCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTACTTTGCTGCATATATCCCAGAAAATGCAGAATGCCCAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTAGAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACTATTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTT</canonical>
            <polymorphic>TTTTTTCGTTTCATCAGCTCTCACCAGACCTACTATGATGAGGAAATTGAGTTCAAACTTCCGGGTCTGGGATTCTCAAAAAACACGTGGGGTGAGAAAGTTTGAGGTATACGATCAGCTAGTTATATAGATCAGAGATGTTAGAAATTCTGACTTCCGAATTCCCAATTCGAAAACTAGCTTCCGACTTCCGACCCTTGAACTCCGCCATAGAATTTTTGCAAAAAAAATGCAAGATTTGTTCGTTTTTGAGCAGAAAAATCCAAAAATGTCGAAATTAGCCCCAATATCATAATTTTATGCTCCGGGATATTTAACAGAACAAGCTAGCTTCTTCTTAGTTTACTTCCGACTTCCGAGTTCAAAAGTTGACTTCCTGAAATCTCTGAAATGTACATCTCCCGGGAATCTCATTTTTTCTATCCGGAATTCTCTTCTTGAACTTCCTTTCTCTTCGTGAAGTCTTTTGTCATCTCCACCACCTGTGTTCTTTTGCCTTYTGTCTTTTGTCTCCTGTTTTCTGAATCATATATTTTCTTACTCGACGTCAATCTGTTCACCGACAAATTGCATATTTTCCCAGGCTCTCTGATCACAAGAAAGTTCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTACTTTGCTGCATATATCCCAGAAAATGCAGAATGCCCAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTAGAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACTATTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTCTTCTTGAACTTCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATAGGAGTAGGTGGAGAGAAATAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTCTCTTCTTGAACTTCCTTTCTCTTCGTGAAGTCTTTTGTCATCTCCACCACCTGTGTTCTTTTGCCTTCTGTCTTTTGTCTCCTGTTTTCTGAATCATATATTTTCTTACTCGACGTCAATCTGTTCACCGACAAATTGCATATTTTCCCAGGCTCTCTGATCACAAGAAAGTTCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTAT</canonical_amplicon>
		<polymorphic_amplicon>ATTCTCTTCTTGAACTTCCTTTCTCTTCGTGAAGTCTTTTGTCATCTCCACCACCTGTGTTCTTTTGCCTTYTGTCTTTTGTCTCCTGTTTTCTGAATCATATATTTTCTTACTCGACGTCAATCTGTTCACCGACAAATTGCATATTTTCCCAGGCTCTCTGATCACAAGAAAGTTCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16872</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>48914</contig_pos>
        <strand>+</strand>
        <context>ATATTTTCCC[A/T]GGCTCTCTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTCTTACTCGACGTCAATCTGTTCACCGACAAATTGCATATTTTCCC</left_flank>
        <right_flank>GGCTCTCTGATCACAAGAAAGTTCATTGAAACTACACATTTCCTCATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACGTGGGGTGAGAAAGTTTGAGGTATACGATCAGCTAGTTATATAGATCAGAGATGTTAGAAATTCTGACTTCCGAATTCCCAATTCGAAAACTAGCTTCCGACTTCCGACCCTTGAACTCCGCCATAGAATTTTTGCAAAAAAAATGCAAGATTTGTTCGTTTTTGAGCAGAAAAATCCAAAAATGTCGAAATTAGCCCCAATATCATAATTTTATGCTCCGGGATATTTAACAGAACAAGCTAGCTTCTTCTTAGTTTACTTCCGACTTCCGAGTTCAAAAGTTGACTTCCTGAAATCTCTGAAATGTACATCTCCCGGGAATCTCATTTTTTCTATCCGGAATTCTCTTCTTGAACTTCCTTTCTCTTCGTGAAGTCTTTTGTCATCTCCACCACCTGTGTTCTTTTGCCTTCTGTCTTTTGTCTCCTGTTTTCTGAATCATATATTTTCTTACTCGACGTCAATCTGTTCACCGACAAATTGCATATTTTCCCAGGCTCTCTGATCACAAGAAAGTTCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTACTTTGCTGCATATATCCCAGAAAATGCAGAATGCCCAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTAGAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACTATTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAAACTAAAAATACATGTTCCAAAAAATATGTGATA</canonical>
            <polymorphic>ACACGTGGGGTGAGAAAGTTTGAGGTATACGATCAGCTAGTTATATAGATCAGAGATGTTAGAAATTCTGACTTCCGAATTCCCAATTCGAAAACTAGCTTCCGACTTCCGACCCTTGAACTCCGCCATAGAATTTTTGCAAAAAAAATGCAAGATTTGTTCGTTTTTGAGCAGAAAAATCCAAAAATGTCGAAATTAGCCCCAATATCATAATTTTATGCTCCGGGATATTTAACAGAACAAGCTAGCTTCTTCTTAGTTTACTTCCGACTTCCGAGTTCAAAAGTTGACTTCCTGAAATCTCTGAAATGTACATCTCCCGGGAATCTCATTTTTTCTATCCGGAATTCTCTTCTTGAACTTCCTTTCTCTTCGTGAAGTCTTTTGTCATCTCCACCACCTGTGTTCTTTTGCCTTCTGTCTTTTGTCTCCTGTTTTCTGAATCATATATTTTCTTACTCGACGTCAATCTGTTCACCGACAAATTGCATATTTTCCCWGGCTCTCTGATCACAAGAAAGTTCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTACTTTGCTGCATATATCCCAGAAAATGCAGAATGCCCAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTAGAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACTATTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAAACTAAAAATACATGTTCCAAAAAATATGTGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTCTTCTTGAACTTCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATAGGAGTAGGTGGAGAGAAATAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTCTCTTCTTGAACTTCCTTTCTCTTCGTGAAGTCTTTTGTCATCTCCACCACCTGTGTTCTTTTGCCTTCTGTCTTTTGTCTCCTGTTTTCTGAATCATATATTTTCTTACTCGACGTCAATCTGTTCACCGACAAATTGCATATTTTCCCAGGCTCTCTGATCACAAGAAAGTTCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTAT</canonical_amplicon>
		<polymorphic_amplicon>ATTCTCTTCTTGAACTTCCTTTCTCTTCGTGAAGTCTTTTGTCATCTCCACCACCTGTGTTCTTTTGCCTTCTGTCTTTTGTCTCCTGTTTTCTGAATCATATATTTTCTTACTCGACGTCAATCTGTTCACCGACAAATTGCATATTTTCCCWGGCTCTCTGATCACAAGAAAGTTCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16873</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>49014</contig_pos>
        <strand>+</strand>
        <context>CCTATTTCTA[C/T]TTTGCTGCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTA</left_flank>
        <right_flank>TTTGCTGCATATATCCCAGAAAATGCAGAATGCCCAATCTCTCTTTTGGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCGACTTCCGACCCTTGAACTCCGCCATAGAATTTTTGCAAAAAAAATGCAAGATTTGTTCGTTTTTGAGCAGAAAAATCCAAAAATGTCGAAATTAGCCCCAATATCATAATTTTATGCTCCGGGATATTTAACAGAACAAGCTAGCTTCTTCTTAGTTTACTTCCGACTTCCGAGTTCAAAAGTTGACTTCCTGAAATCTCTGAAATGTACATCTCCCGGGAATCTCATTTTTTCTATCCGGAATTCTCTTCTTGAACTTCCTTTCTCTTCGTGAAGTCTTTTGTCATCTCCACCACCTGTGTTCTTTTGCCTTCTGTCTTTTGTCTCCTGTTTTCTGAATCATATATTTTCTTACTCGACGTCAATCTGTTCACCGACAAATTGCATATTTTCCCAGGCTCTCTGATCACAAGAAAGTTCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTACTTTGCTGCATATATCCCAGAAAATGCAGAATGCCCAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTAGAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACTATTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAAACTAAAAATACATGTTCCAAAAAATATGTGATAGAGACCAATTTTGAGATCAAGGAAGTAGAAAAAAAAACAAGATTTGCAAAACCAGCTGATTCATTGTCTTTAATAAATCTTGTCTCATTCTTAATTCTCC</canonical>
            <polymorphic>TCCGACTTCCGACCCTTGAACTCCGCCATAGAATTTTTGCAAAAAAAATGCAAGATTTGTTCGTTTTTGAGCAGAAAAATCCAAAAATGTCGAAATTAGCCCCAATATCATAATTTTATGCTCCGGGATATTTAACAGAACAAGCTAGCTTCTTCTTAGTTTACTTCCGACTTCCGAGTTCAAAAGTTGACTTCCTGAAATCTCTGAAATGTACATCTCCCGGGAATCTCATTTTTTCTATCCGGAATTCTCTTCTTGAACTTCCTTTCTCTTCGTGAAGTCTTTTGTCATCTCCACCACCTGTGTTCTTTTGCCTTCTGTCTTTTGTCTCCTGTTTTCTGAATCATATATTTTCTTACTCGACGTCAATCTGTTCACCGACAAATTGCATATTTTCCCAGGCTCTCTGATCACAAGAAAGTTCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTAYTTTGCTGCATATATCCCAGAAAATGCAGAATGCCCAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTAGAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACTATTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAAACTAAAAATACATGTTCCAAAAAATATGTGATAGAGACCAATTTTGAGATCAAGGAAGTAGAAAAAAAAACAAGATTTGCAAAACCAGCTGATTCATTGTCTTTAATAAATCTTGTCTCATTCTTAATTCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTGAAACTACACATTTCCTC</pcr_primer_p1>
		<pcr_primer_p2>CAAGACTAATCCGTTTTAAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTACTTTGCTGCATATATCCCAGAAAATGCAGAATGCCCAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTAGAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTG</canonical_amplicon>
		<polymorphic_amplicon>TCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTAYTTTGCTGCATATATCCCAGAAAATGCAGAATGCCCAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTAGAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16874</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>49047</contig_pos>
        <strand>+</strand>
        <context>ATGCAGAATG[C/T]CYAATCTCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCTACTCCTATTTCTACTTTGCTGCATATATCCCAGAAAATGCAGAATG</left_flank>
        <right_flank>CCAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTAGAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGCAAAAAAAATGCAAGATTTGTTCGTTTTTGAGCAGAAAAATCCAAAAATGTCGAAATTAGCCCCAATATCATAATTTTATGCTCCGGGATATTTAACAGAACAAGCTAGCTTCTTCTTAGTTTACTTCCGACTTCCGAGTTCAAAAGTTGACTTCCTGAAATCTCTGAAATGTACATCTCCCGGGAATCTCATTTTTTCTATCCGGAATTCTCTTCTTGAACTTCCTTTCTCTTCGTGAAGTCTTTTGTCATCTCCACCACCTGTGTTCTTTTGCCTTCTGTCTTTTGTCTCCTGTTTTCTGAATCATATATTTTCTTACTCGACGTCAATCTGTTCACCGACAAATTGCATATTTTCCCAGGCTCTCTGATCACAAGAAAGTTCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTACTTTGCTGCATATATCCCAGAAAATGCAGAATGCCCAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTAGAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACTATTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAAACTAAAAATACATGTTCCAAAAAATATGTGATAGAGACCAATTTTGAGATCAAGGAAGTAGAAAAAAAAACAAGATTTGCAAAACCAGCTGATTCATTGTCTTTAATAAATCTTGTCTCATTCTTAATTCTCCAGACTAATCCTTTTCACTTTGATTTTCACTTTG</canonical>
            <polymorphic>TTTTTGCAAAAAAAATGCAAGATTTGTTCGTTTTTGAGCAGAAAAATCCAAAAATGTCGAAATTAGCCCCAATATCATAATTTTATGCTCCGGGATATTTAACAGAACAAGCTAGCTTCTTCTTAGTTTACTTCCGACTTCCGAGTTCAAAAGTTGACTTCCTGAAATCTCTGAAATGTACATCTCCCGGGAATCTCATTTTTTCTATCCGGAATTCTCTTCTTGAACTTCCTTTCTCTTCGTGAAGTCTTTTGTCATCTCCACCACCTGTGTTCTTTTGCCTTCTGTCTTTTGTCTCCTGTTTTCTGAATCATATATTTTCTTACTCGACGTCAATCTGTTCACCGACAAATTGCATATTTTCCCAGGCTCTCTGATCACAAGAAAGTTCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTACTTTGCTGCATATATCCCAGAAAATGCAGAATGYCCAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTAGAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACTATTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAAACTAAAAATACATGTTCCAAAAAATATGTGATAGAGACCAATTTTGAGATCAAGGAAGTAGAAAAAAAAACAAGATTTGCAAAACCAGCTGATTCATTGTCTTTAATAAATCTTGTCTCATTCTTAATTCTCCAGACTAATCCTTTTCACTTTGATTTTCACTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTGAAACTACACATTTCCTC</pcr_primer_p1>
		<pcr_primer_p2>CAAGACTAATCCGTTTTAAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTACTTTGCTGCATATATCCCAGAAAATGCAGAATGCCCAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTAGAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTG</canonical_amplicon>
		<polymorphic_amplicon>TCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTACTTTGCTGCATATATCCCAGAAAATGCAGAATGYCCAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTAGAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16875</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>49049</contig_pos>
        <strand>+</strand>
        <context>GCAGAATGYC[C/T]AATCTCTCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTACTCCTATTTCTACTTTGCTGCATATATCCCAGAAAATGCAGAATGCC</left_flank>
        <right_flank>AATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTAGAAAAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGCAAAAAAAATGCAAGATTTGTTCGTTTTTGAGCAGAAAAATCCAAAAATGTCGAAATTAGCCCCAATATCATAATTTTATGCTCCGGGATATTTAACAGAACAAGCTAGCTTCTTCTTAGTTTACTTCCGACTTCCGAGTTCAAAAGTTGACTTCCTGAAATCTCTGAAATGTACATCTCCCGGGAATCTCATTTTTTCTATCCGGAATTCTCTTCTTGAACTTCCTTTCTCTTCGTGAAGTCTTTTGTCATCTCCACCACCTGTGTTCTTTTGCCTTCTGTCTTTTGTCTCCTGTTTTCTGAATCATATATTTTCTTACTCGACGTCAATCTGTTCACCGACAAATTGCATATTTTCCCAGGCTCTCTGATCACAAGAAAGTTCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTACTTTGCTGCATATATCCCAGAAAATGCAGAATGCCCAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTAGAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACTATTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAAACTAAAAATACATGTTCCAAAAAATATGTGATAGAGACCAATTTTGAGATCAAGGAAGTAGAAAAAAAAACAAGATTTGCAAAACCAGCTGATTCATTGTCTTTAATAAATCTTGTCTCATTCTTAATTCTCCAGACTAATCCTTTTCACTTTGATTTTCACTTTGAC</canonical>
            <polymorphic>TTTGCAAAAAAAATGCAAGATTTGTTCGTTTTTGAGCAGAAAAATCCAAAAATGTCGAAATTAGCCCCAATATCATAATTTTATGCTCCGGGATATTTAACAGAACAAGCTAGCTTCTTCTTAGTTTACTTCCGACTTCCGAGTTCAAAAGTTGACTTCCTGAAATCTCTGAAATGTACATCTCCCGGGAATCTCATTTTTTCTATCCGGAATTCTCTTCTTGAACTTCCTTTCTCTTCGTGAAGTCTTTTGTCATCTCCACCACCTGTGTTCTTTTGCCTTCTGTCTTTTGTCTCCTGTTTTCTGAATCATATATTTTCTTACTCGACGTCAATCTGTTCACCGACAAATTGCATATTTTCCCAGGCTCTCTGATCACAAGAAAGTTCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTACTTTGCTGCATATATCCCAGAAAATGCAGAATGCCYAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTAGAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACTATTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAAACTAAAAATACATGTTCCAAAAAATATGTGATAGAGACCAATTTTGAGATCAAGGAAGTAGAAAAAAAAACAAGATTTGCAAAACCAGCTGATTCATTGTCTTTAATAAATCTTGTCTCATTCTTAATTCTCCAGACTAATCCTTTTCACTTTGATTTTCACTTTGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTGAAACTACACATTTCCTC</pcr_primer_p1>
		<pcr_primer_p2>CAAGACTAATCCGTTTTAAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTACTTTGCTGCATATATCCCAGAAAATGCAGAATGCCCAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTAGAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTG</canonical_amplicon>
		<polymorphic_amplicon>TCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTACTTTGCTGCATATATCCCAGAAAATGCAGAATGCCYAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTAGAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16876</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>49092</contig_pos>
        <strand>+</strand>
        <context>TTGCAAAGTT[A/T]GAAAAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAATGCCCAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTT</left_flank>
        <right_flank>GAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCAAAAATGTCGAAATTAGCCCCAATATCATAATTTTATGCTCCGGGATATTTAACAGAACAAGCTAGCTTCTTCTTAGTTTACTTCCGACTTCCGAGTTCAAAAGTTGACTTCCTGAAATCTCTGAAATGTACATCTCCCGGGAATCTCATTTTTTCTATCCGGAATTCTCTTCTTGAACTTCCTTTCTCTTCGTGAAGTCTTTTGTCATCTCCACCACCTGTGTTCTTTTGCCTTCTGTCTTTTGTCTCCTGTTTTCTGAATCATATATTTTCTTACTCGACGTCAATCTGTTCACCGACAAATTGCATATTTTCCCAGGCTCTCTGATCACAAGAAAGTTCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTACTTTGCTGCATATATCCCAGAAAATGCAGAATGCCCAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTAGAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACTATTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAAACTAAAAATACATGTTCCAAAAAATATGTGATAGAGACCAATTTTGAGATCAAGGAAGTAGAAAAAAAAACAAGATTTGCAAAACCAGCTGATTCATTGTCTTTAATAAATCTTGTCTCATTCTTAATTCTCCAGACTAATCCTTTTCACTTTGATTTTCACTTTGACTTACCCTTATTAATTTGATCTCTCTATGTCTCTTTTTTGAGCC</canonical>
            <polymorphic>ATCCAAAAATGTCGAAATTAGCCCCAATATCATAATTTTATGCTCCGGGATATTTAACAGAACAAGCTAGCTTCTTCTTAGTTTACTTCCGACTTCCGAGTTCAAAAGTTGACTTCCTGAAATCTCTGAAATGTACATCTCCCGGGAATCTCATTTTTTCTATCCGGAATTCTCTTCTTGAACTTCCTTTCTCTTCGTGAAGTCTTTTGTCATCTCCACCACCTGTGTTCTTTTGCCTTCTGTCTTTTGTCTCCTGTTTTCTGAATCATATATTTTCTTACTCGACGTCAATCTGTTCACCGACAAATTGCATATTTTCCCAGGCTCTCTGATCACAAGAAAGTTCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTACTTTGCTGCATATATCCCAGAAAATGCAGAATGCCCAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTWGAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACTATTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAAACTAAAAATACATGTTCCAAAAAATATGTGATAGAGACCAATTTTGAGATCAAGGAAGTAGAAAAAAAAACAAGATTTGCAAAACCAGCTGATTCATTGTCTTTAATAAATCTTGTCTCATTCTTAATTCTCCAGACTAATCCTTTTCACTTTGATTTTCACTTTGACTTACCCTTATTAATTTGATCTCTCTATGTCTCTTTTTTGAGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTGAAACTACACATTTCCTC</pcr_primer_p1>
		<pcr_primer_p2>CAAGACTAATCCGTTTTAAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTACTTTGCTGCATATATCCCAGAAAATGCAGAATGCCCAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTAGAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTG</canonical_amplicon>
		<polymorphic_amplicon>TCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTACTTTGCTGCATATATCCCAGAAAATGCAGAATGCCCAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTWGAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16877</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>49235</contig_pos>
        <strand>+</strand>
        <context>GAAGAGCACT[A/T]TTGGTGTGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACT</left_flank>
        <right_flank>TTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGAATCTCATTTTTTCTATCCGGAATTCTCTTCTTGAACTTCCTTTCTCTTCGTGAAGTCTTTTGTCATCTCCACCACCTGTGTTCTTTTGCCTTCTGTCTTTTGTCTCCTGTTTTCTGAATCATATATTTTCTTACTCGACGTCAATCTGTTCACCGACAAATTGCATATTTTCCCAGGCTCTCTGATCACAAGAAAGTTCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTACTTTGCTGCATATATCCCAGAAAATGCAGAATGCCCAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTAGAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACTATTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAAACTAAAAATACATGTTCCAAAAAATATGTGATAGAGACCAATTTTGAGATCAAGGAAGTAGAAAAAAAAACAAGATTTGCAAAACCAGCTGATTCATTGTCTTTAATAAATCTTGTCTCATTCTTAATTCTCCAGACTAATCCTTTTCACTTTGATTTTCACTTTGACTTACCCTTATTAATTTGATCTCTCTATGTCTCTTTTTTGAGCCTTTTGCAAATATCTGCGTCTCTACCTTCGGGACACATTGTCTACAACTCTCTCGTTCCTCTATAACTTCACTGGGTCTCTTGCCCTTCCCACTATCTAATTTCTCGAGACAAACTCTCGTATTGGCATCCCCGTGGTTACTCT</canonical>
            <polymorphic>GGGAATCTCATTTTTTCTATCCGGAATTCTCTTCTTGAACTTCCTTTCTCTTCGTGAAGTCTTTTGTCATCTCCACCACCTGTGTTCTTTTGCCTTCTGTCTTTTGTCTCCTGTTTTCTGAATCATATATTTTCTTACTCGACGTCAATCTGTTCACCGACAAATTGCATATTTTCCCAGGCTCTCTGATCACAAGAAAGTTCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTACTTTGCTGCATATATCCCAGAAAATGCAGAATGCCCAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTAGAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACTWTTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAAACTAAAAATACATGTTCCAAAAAATATGTGATAGAGACCAATTTTGAGATCAAGGAAGTAGAAAAAAAAACAAGATTTGCAAAACCAGCTGATTCATTGTCTTTAATAAATCTTGTCTCATTCTTAATTCTCCAGACTAATCCTTTTCACTTTGATTTTCACTTTGACTTACCCTTATTAATTTGATCTCTCTATGTCTCTTTTTTGAGCCTTTTGCAAATATCTGCGTCTCTACCTTCGGGACACATTGTCTACAACTCTCTCGTTCCTCTATAACTTCACTGGGTCTCTTGCCCTTCCCACTATCTAATTTCTCGAGACAAACTCTCGTATTGGCATCCCCGTGGTTACTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATCTTTTTCAGTCTACTTGATG</pcr_primer_p1>
		<pcr_primer_p2>TTCCAAAAATTTTAGTGTTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACTATTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAA</canonical_amplicon>
		<polymorphic_amplicon>TGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACTWTTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16878</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>49254</contig_pos>
        <strand>+</strand>
        <context>ACTTCTTGTG[C/T]CTAATATTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATGCACGTTCAGTATAGGAGAAGAGCACTATTGGTGTGACTTCTTGTG</left_flank>
        <right_flank>CTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCGGAATTCTCTTCTTGAACTTCCTTTCTCTTCGTGAAGTCTTTTGTCATCTCCACCACCTGTGTTCTTTTGCCTTCTGTCTTTTGTCTCCTGTTTTCTGAATCATATATTTTCTTACTCGACGTCAATCTGTTCACCGACAAATTGCATATTTTCCCAGGCTCTCTGATCACAAGAAAGTTCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTACTTTGCTGCATATATCCCAGAAAATGCAGAATGCCCAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTAGAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACTATTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAAACTAAAAATACATGTTCCAAAAAATATGTGATAGAGACCAATTTTGAGATCAAGGAAGTAGAAAAAAAAACAAGATTTGCAAAACCAGCTGATTCATTGTCTTTAATAAATCTTGTCTCATTCTTAATTCTCCAGACTAATCCTTTTCACTTTGATTTTCACTTTGACTTACCCTTATTAATTTGATCTCTCTATGTCTCTTTTTTGAGCCTTTTGCAAATATCTGCGTCTCTACCTTCGGGACACATTGTCTACAACTCTCTCGTTCCTCTATAACTTCACTGGGTCTCTTGCCCTTCCCACTATCTAATTTCTCGAGACAAACTCTCGTATTGGCATCCCCGTGGTTACTCTCTCTTCCTTCACATTTCGG</canonical>
            <polymorphic>TCCGGAATTCTCTTCTTGAACTTCCTTTCTCTTCGTGAAGTCTTTTGTCATCTCCACCACCTGTGTTCTTTTGCCTTCTGTCTTTTGTCTCCTGTTTTCTGAATCATATATTTTCTTACTCGACGTCAATCTGTTCACCGACAAATTGCATATTTTCCCAGGCTCTCTGATCACAAGAAAGTTCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTACTTTGCTGCATATATCCCAGAAAATGCAGAATGCCCAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTAGAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACTATTGGTGTGACTTCTTGTGYCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAAACTAAAAATACATGTTCCAAAAAATATGTGATAGAGACCAATTTTGAGATCAAGGAAGTAGAAAAAAAAACAAGATTTGCAAAACCAGCTGATTCATTGTCTTTAATAAATCTTGTCTCATTCTTAATTCTCCAGACTAATCCTTTTCACTTTGATTTTCACTTTGACTTACCCTTATTAATTTGATCTCTCTATGTCTCTTTTTTGAGCCTTTTGCAAATATCTGCGTCTCTACCTTCGGGACACATTGTCTACAACTCTCTCGTTCCTCTATAACTTCACTGGGTCTCTTGCCCTTCCCACTATCTAATTTCTCGAGACAAACTCTCGTATTGGCATCCCCGTGGTTACTCTCTCTTCCTTCACATTTCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATCTTTTTCAGTCTACTTGATG</pcr_primer_p1>
		<pcr_primer_p2>TTCCAAAAATTTTAGTGTTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACTATTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAA</canonical_amplicon>
		<polymorphic_amplicon>TGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACTATTGGTGTGACTTCTTGTGYCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16879</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>49293</contig_pos>
        <strand>+</strand>
        <context>ATTATAACTC[G/T]TTGATTTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTC</left_flank>
        <right_flank>TTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTTTTGTCATCTCCACCACCTGTGTTCTTTTGCCTTCTGTCTTTTGTCTCCTGTTTTCTGAATCATATATTTTCTTACTCGACGTCAATCTGTTCACCGACAAATTGCATATTTTCCCAGGCTCTCTGATCACAAGAAAGTTCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTACTTTGCTGCATATATCCCAGAAAATGCAGAATGCCCAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTAGAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACTATTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAAACTAAAAATACATGTTCCAAAAAATATGTGATAGAGACCAATTTTGAGATCAAGGAAGTAGAAAAAAAAACAAGATTTGCAAAACCAGCTGATTCATTGTCTTTAATAAATCTTGTCTCATTCTTAATTCTCCAGACTAATCCTTTTCACTTTGATTTTCACTTTGACTTACCCTTATTAATTTGATCTCTCTATGTCTCTTTTTTGAGCCTTTTGCAAATATCTGCGTCTCTACCTTCGGGACACATTGTCTACAACTCTCTCGTTCCTCTATAACTTCACTGGGTCTCTTGCCCTTCCCACTATCTAATTTCTCGAGACAAACTCTCGTATTGGCATCCCCGTGGTTACTCTCTCTTCCTTCACATTTCGGTCTCTGTCTCTTTCCATCTCTCGTCATCGTCCCCCACCT</canonical>
            <polymorphic>GTCTTTTGTCATCTCCACCACCTGTGTTCTTTTGCCTTCTGTCTTTTGTCTCCTGTTTTCTGAATCATATATTTTCTTACTCGACGTCAATCTGTTCACCGACAAATTGCATATTTTCCCAGGCTCTCTGATCACAAGAAAGTTCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTACTTTGCTGCATATATCCCAGAAAATGCAGAATGCCCAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTAGAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACTATTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCKTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAAACTAAAAATACATGTTCCAAAAAATATGTGATAGAGACCAATTTTGAGATCAAGGAAGTAGAAAAAAAAACAAGATTTGCAAAACCAGCTGATTCATTGTCTTTAATAAATCTTGTCTCATTCTTAATTCTCCAGACTAATCCTTTTCACTTTGATTTTCACTTTGACTTACCCTTATTAATTTGATCTCTCTATGTCTCTTTTTTGAGCCTTTTGCAAATATCTGCGTCTCTACCTTCGGGACACATTGTCTACAACTCTCTCGTTCCTCTATAACTTCACTGGGTCTCTTGCCCTTCCCACTATCTAATTTCTCGAGACAAACTCTCGTATTGGCATCCCCGTGGTTACTCTCTCTTCCTTCACATTTCGGTCTCTGTCTCTTTCCATCTCTCGTCATCGTCCCCCACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATCTTTTTCAGTCTACTTGATG</pcr_primer_p1>
		<pcr_primer_p2>TTCCAAAAATTTTAGTGTTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACTATTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAA</canonical_amplicon>
		<polymorphic_amplicon>TGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACTATTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCKTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16880</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>49344</contig_pos>
        <strand></strand>
        <context>ATAAATATAG[C/T]CAGAAATGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAG</left_flank>
        <right_flank>CAGAAATGTATACTAGAAAACACTAAAATTTTTGGAAACTAAAAATACAT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTGTTTTCTGAATCATATATTTTCTTACTCGACGTCAATCTGTTCACCGACAAATTGCATATTTTCCCAGGCTCTCTGATCACAAGAAAGTTCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTACTTTGCTGCATATATCCCAGAAAATGCAGAATGCCCAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTAGAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACTATTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAAACTAAAAATACATGTTCCAAAAAATATGTGATAGAGACCAATTTTGAGATCAAGGAAGTAGAAAAAAAAACAAGATTTGCAAAACCAGCTGATTCATTGTCTTTAATAAATCTTGTCTCATTCTTAATTCTCCAGACTAATCCTTTTCACTTTGATTTTCACTTTGACTTACCCTTATTAATTTGATCTCTCTATGTCTCTTTTTTGAGCCTTTTGCAAATATCTGCGTCTCTACCTTCGGGACACATTGTCTACAACTCTCTCGTTCCTCTATAACTTCACTGGGTCTCTTGCCCTTCCCACTATCTAATTTCTCGAGACAAACTCTCGTATTGGCATCCCCGTGGTTACTCTCTCTTCCTTCACATTTCGGTCTCTGTCTCTTTCCATCTCTCGTCATCGTCCCCCACCTTTCCAACCTTTCATTTCTTTTCCCTCTCCACTTTTCCTATGATCTCTGATT</canonical>
            <polymorphic>CCTGTTTTCTGAATCATATATTTTCTTACTCGACGTCAATCTGTTCACCGACAAATTGCATATTTTCCCAGGCTCTCTGATCACAAGAAAGTTCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTACTTTGCTGCATATATCCCAGAAAATGCAGAATGCCCAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTAGAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACTATTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAGYCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAAACTAAAAATACATGTTCCAAAAAATATGTGATAGAGACCAATTTTGAGATCAAGGAAGTAGAAAAAAAAACAAGATTTGCAAAACCAGCTGATTCATTGTCTTTAATAAATCTTGTCTCATTCTTAATTCTCCAGACTAATCCTTTTCACTTTGATTTTCACTTTGACTTACCCTTATTAATTTGATCTCTCTATGTCTCTTTTTTGAGCCTTTTGCAAATATCTGCGTCTCTACCTTCGGGACACATTGTCTACAACTCTCTCGTTCCTCTATAACTTCACTGGGTCTCTTGCCCTTCCCACTATCTAATTTCTCGAGACAAACTCTCGTATTGGCATCCCCGTGGTTACTCTCTCTTCCTTCACATTTCGGTCTCTGTCTCTTTCCATCTCTCGTCATCGTCCCCCACCTTTCCAACCTTTCATTTCTTTTCCCTCTCCACTTTTCCTATGATCTCTGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>254 194 160 126 121 73 72</canonical_bands>
                <polymorphic_bands>254 199 194 160 121 72</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAGACAGCTGCAAATAGATA</pcr_primer_p1>
		<pcr_primer_p2>TGGAGAATTAAGAATGAGACAAG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAAACTAAAAATACATGTTCCAAAAAATATGTGATAGAGACCAATTTTGAGATCAAGGAAGTAGAAAAAAAAACAAGATTTGCAAAACCAGCTGATTCATTGTCTTTAATAAATCTTGTCTCATTCTTAATTCTCCA</canonical_amplicon>
		<polymorphic_amplicon>TTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAGYCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAAACTAAAAATACATGTTCCAAAAAATATGTGATAGAGACCAATTTTGAGATCAAGGAAGTAGAAAAAAAAACAAGATTTGCAAAACCAGCTGATTCATTGTCTTTAATAAATCTTGTCTCATTCTTAATTCTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16881</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>53002</contig_pos>
        <strand>+</strand>
        <context>TTTGATATTA[A/G]ATAAAAATGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCCAATATATGATCTGCCTCTTTTGATACTTTATTCATGTTTGATATTA</left_flank>
        <right_flank>ATAAAAATGTATATTTCAATAAAAAGAGTTAATTAAAAGAAATATTGATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGCCGGCGATCGGTAAGAGATACAAAATCGTAACAATTCATTCAATTATAAGTTTTGAAGATTTGGTCGACTCCTTCTTCTGGGAACTGTACTTGCAACAATGGCTGTGGAGATGAAAGAAGCTGTTTTGGTTGCTGATTTCTTTGATCAAATTCAATTTTCTACTTTCGCAAAACAACTTTTATTTGGAATCAAAACAGAGTCAGATATTTGAAATTTTTAAAAATACTCTTTCATTTAGTTTTCTGTTGTTTAACCTGTCGATATTCATCCATCATAGTGCCTTTTCTTCAAAAATCAGTGATATACCAAACCACCTTCCGATTGTAATTTAACTAAAAAATATTGTTCCGAACGGGTATTTGTTATCAGTTAATAGTATCCGTTATTCTCCCAAAAACTGTCACCTCATTACCATTTTCAGCCAAATTTGTCGTCTAGATTCTGTCCCAATATATGATCTGCCTCTTTTGATACTTTATTCATGTTTGATATTAAATAAAAATGTATATTTCAATAAAAAGAGTTAATTAAAAGAAATATTGATAAAGATTACTCTAACAAAAGATGTACAATAACTAAGGAATTTGGAATCCGGAATTCGGACAAAAATCTTTTTCACGGAATCCGGAATTAAAAAATAACACACACACAGAATCCGAAATACTGAAACCGGAAACAGAACATCTCTGGTTTACACTAGTAATAAGTATTTGTACACCGTTACGTCAGAATAGATACCGTAACTCCAAAAACGAAACATTTCCTGCCCCGCCTCCTTCAATCAAGAAGACCGGGCGCTGCGTGATGTAAAACCCATTGAAATTCGAAAAAATAAACATTTAGCAAATATTGACCTGTATATATATATGTACTCATTTCCCAAAATAAATCGATTCTTATTTTTTTTCTGTATAATCATCTTCTTCTGTTTTTCGTTTGTGTTTTTCCATGCTGATTTTTCTGACCACTGCCTCTGGAAAGCTGTCCAAATAGTT</canonical>
            <polymorphic>GATGCCGGCGATCGGTAAGAGATACAAAATCGTAACAATTCATTCAATTATAAGTTTTGAAGATTTGGTCGACTCCTTCTTCTGGGAACTGTACTTGCAACAATGGCTGTGGAGATGAAAGAAGCTGTTTTGGTTGCTGATTTCTTTGATCAAATTCAATTTTCTACTTTCGCAAAACAACTTTTATTTGGAATCAAAACAGAGTCAGATATTTGAAATTTTTAAAAATACTCTTTCATTTAGTTTTCTGTTGTTTAACCTGTCGATATTCATCCATCATAGTGCCTTTTCTTCAAAAATCAGTGATATACCAAACCACCTTCCGATTGTAATTTAACTAAAAAATATTGTTCCGAACGGGTATTTGTTATCAGTTAATAGTATCCGTTATTCTCCCAAAAACTGTCACCTCATTACCATTTTCAGCCAAATTTGTCGTCTAGATTCTGTCCCAATATATGATCTGCCTCTTTTGATACTTTATTCATGTTTGATATTARATAAAAATGTATATTTCAATAAAAAGAGTTAATTAAAAGAAATATTGATAAAGATTACTCTAACAAAAGATGTACAATAACTAAGGAATTTGGAATCCGGAATTCGGACAAAAATCTTTTTCACGGAATCCGGAATTAAAAAATAACACACACACAGAATCCGAAATACTGAAACCGGAAACAGAACATCTCTGGTTTACACTAGTAATAAGTATTTGTACACCGTTACGTCAGAATAGATACCGTAACTCCAAAAACGAAACATTTCCTGCCCCGCCTCCTTCAATCAAGAAGACCGGGCGCTGCGTGATGTAAAACCCATTGAAATTCGAAAAAATAAACATTTAGCAAATATTGACCTGTATATATATATGTACTCATTTCCCAAAATAAATCGATTCTTATTTTTTTTCTGTATAATCATCTTCTTCTGTTTTTCGTTTGTGTTTTTCCATGCTGATTTTTCTGACCACTGCCTCTGGAAAGCTGTCCAAATAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>364 222 122 103 79 41 33 32 4</canonical_bands>
                <polymorphic_bands>364 222 154 103 79 41 33 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATTCTGTCCCAATATATGATCT</pcr_primer_p1>
		<pcr_primer_p2>TTACTAGTGTAAACCAGAGATGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>AGATTCTGTCCCAATATATGATCTGCCTCTTTTGATACTTTATTCATGTTTGATATTAAATAAAAATGTATATTTCAATAAAAAGAGTTAATTAAAAGAAATATTGATAAAGATTACTCTAACAAAAGATGTACAATAACTAAGGAATTTGGAATCCGGAATTCGGACAAAAATCTTTTTCACGGAATCCGGAATTAAAAAATAACACACACACAGAATCCGAAATACTGAAACCGGAAACAGAACATCTCTGGTTTACACTAGTAA</canonical_amplicon>
		<polymorphic_amplicon>AGATTCTGTCCCAATATATGATCTGCCTCTTTTGATACTTTATTCATGTTTGATATTARATAAAAATGTATATTTCAATAAAAAGAGTTAATTAAAAGAAATATTGATAAAGATTACTCTAACAAAAGATGTACAATAACTAAGGAATTTGGAATCCGGAATTCGGACAAAAATCTTTTTCACGGAATCCGGAATTAAAAAATAACACACACACAGAATCCGAAATACTGAAACCGGAAACAGAACATCTCTGGTTTACACTAGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16882</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>52841</contig_pos>
        <strand>+</strand>
        <context>GTAATTTAAC[C/T]AAAAAATATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTTCAAAAATCAGTGATATACCAAACCACCTTCCGATTGTAATTTAAC</left_flank>
        <right_flank>AAAAAATATTGTTCCGAACGGGTATTTGTTATCAGTTAATAGTATCCGTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAAATTGATATGACTGAGTTTGCTGCATTCAAAGCAATTTTCTTCCTCAATCCAGATGCAGATGACGTTGATGCAAATGCCAAGAAAATGTTGAGTGATGGCAGAAGCGCCATTACTAATGCTCTTTATCGCTATATGGTCAAGAAGAAGGGGCCAGAAGATGCCGGCGATCGGTAAGAGATACAAAATCGTAACAATTCATTCAATTATAAGTTTTGAAGATTTGGTCGACTCCTTCTTCTGGGAACTGTACTTGCAACAATGGCTGTGGAGATGAAAGAAGCTGTTTTGGTTGCTGATTTCTTTGATCAAATTCAATTTTCTACTTTCGCAAAACAACTTTTATTTGGAATCAAAACAGAGTCAGATATTTGAAATTTTTAAAAATACTCTTTCATTTAGTTTTCTGTTGTTTAACCTGTCGATATTCATCCATCATAGTGCCTTTTCTTCAAAAATCAGTGATATACCAAACCACCTTCCGATTGTAATTTAACTAAAAAATATTGTTCCGAACGGGTATTTGTTATCAGTTAATAGTATCCGTTATTCTCCCAAAAACTGTCACCTCATTACCATTTTCAGCCAAATTTGTCGTCTAGATTCTGTCCCAATATATGATCTGCCTCTTTTGATACTTTATTCATGTTTGATATTAAATAAAAATGTATATTTCAATAAAAAGAGTTAATTAAAAGAAATATTGATAAAGATTACTCTAACAAAAGATGTACAATAACTAAGGAATTTGGAATCCGGAATTCGGACAAAAATCTTTTTCACGGAATCCGGAATTAAAAAATAACACACACACAGAATCCGAAATACTGAAACCGGAAACAGAACATCTCTGGTTTACACTAGTAATAAGTATTTGTACACCGTTACGTCAGAATAGATACCGTAACTCCAAAAACGAAACATTTCCTGCCCCGCCTCCTTCAATCAAGAAGACCGGGCGCTGCGTGATGTAAAACCCATTGAAATTCGAAAAAATA</canonical>
            <polymorphic>TGGAAATTGATATGACTGAGTTTGCTGCATTCAAAGCAATTTTCTTCCTCAATCCAGATGCAGATGACGTTGATGCAAATGCCAAGAAAATGTTGAGTGATGGCAGAAGCGCCATTACTAATGCTCTTTATCGCTATATGGTCAAGAAGAAGGGGCCAGAAGATGCCGGCGATCGGTAAGAGATACAAAATCGTAACAATTCATTCAATTATAAGTTTTGAAGATTTGGTCGACTCCTTCTTCTGGGAACTGTACTTGCAACAATGGCTGTGGAGATGAAAGAAGCTGTTTTGGTTGCTGATTTCTTTGATCAAATTCAATTTTCTACTTTCGCAAAACAACTTTTATTTGGAATCAAAACAGAGTCAGATATTTGAAATTTTTAAAAATACTCTTTCATTTAGTTTTCTGTTGTTTAACCTGTCGATATTCATCCATCATAGTGCCTTTTCTTCAAAAATCAGTGATATACCAAACCACCTTCCGATTGTAATTTAACYAAAAAATATTGTTCCGAACGGGTATTTGTTATCAGTTAATAGTATCCGTTATTCTCCCAAAAACTGTCACCTCATTACCATTTTCAGCCAAATTTGTCGTCTAGATTCTGTCCCAATATATGATCTGCCTCTTTTGATACTTTATTCATGTTTGATATTAAATAAAAATGTATATTTCAATAAAAAGAGTTAATTAAAAGAAATATTGATAAAGATTACTCTAACAAAAGATGTACAATAACTAAGGAATTTGGAATCCGGAATTCGGACAAAAATCTTTTTCACGGAATCCGGAATTAAAAAATAACACACACACAGAATCCGAAATACTGAAACCGGAAACAGAACATCTCTGGTTTACACTAGTAATAAGTATTTGTACACCGTTACGTCAGAATAGATACCGTAACTCCAAAAACGAAACATTTCCTGCCCCGCCTCCTTCAATCAAGAAGACCGGGCGCTGCGTGATGTAAAACCCATTGAAATTCGAAAAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAACAACTTTTATTTGGAATC</pcr_primer_p1>
		<pcr_primer_p2>AAATGGTAATGAGGTGACAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAACAACTTTTATTTGGAATCAAAACAGAGTCAGATATTTGAAATTTTTAAAAATACTCTTTCATTTAGTTTTCTGTTGTTTAACCTGTCGATATTCATCCATCATAGTGCCTTTTCTTCAAAAATCAGTGATATACCAAACCACCTTCCGATTGTAATTTAACTAAAAAATATTGTTCCGAACGGGTATTTGTTATCAGTTAATAGTATCCGTTATTCTCCCAAAAACTGTCACCTCATTACCATTT</canonical_amplicon>
		<polymorphic_amplicon>CAAAACAACTTTTATTTGGAATCAAAACAGAGTCAGATATTTGAAATTTTTAAAAATACTCTTTCATTTAGTTTTCTGTTGTTTAACCTGTCGATATTCATCCATCATAGTGCCTTTTCTTCAAAAATCAGTGATATACCAAACCACCTTCCGATTGTAATTTAACYAAAAAATATTGTTCCGAACGGGTATTTGTTATCAGTTAATAGTATCCGTTATTCTCCCAAAAACTGTCACCTCATTACCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16883</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>58126</contig_pos>
        <strand>+</strand>
        <context>GAGCAGGACC[A/G]TTTTTGGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGAGATCATCGACTTCTAGAAAGCCAGCTGTCAATGAATGAGCAGGACC</left_flank>
        <right_flank>TTTTTGGTTTCAGCAATAGTTTTCAGATGCTGGATTCCTCTTTTCAACAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTGTTTAAATCATCAAGAAAATGATTGATAACATCAGGATCTATGGTGAGAACCACTTTGTCAACCCAATTCTGGACGTCATGGACCAATGTATTCATTTTCTCGAATACCAATTTCTCAATATCGAAATTTGTGAAGTTCCGATTTCCGGGTTCCAAGGTCACATTAGCATAACAAGAACTGACAGTGTTATTGAGACTATGCAACGCATCGACATCAATATGTTGTGAGCGATCTTCTACTACTATCAGCATCTTTGCGGTGATTTCCAATTCATCACTCGATGCACTGAACTCGGCTTGAAAGTTCTTCCATCGTTCCCTCAGTTTGACCATTCTCTCTCCAAACTCGAAAAATCCATGAAGACTCTTTTCCAGTTCTTCTGTACTTTTTCCTCTAGAAATTTCCTTTTTGAACCAGTCACTTTTCAAGTCAGCAGAAACTTTGATGAGATCATCGACTTCTAGAAAGCCAGCTGTCAATGAATGAGCAGGACCATTTTTGGTTTCAGCAATAGTTTTCAGATGCTGGATTCCTCTTTTCAACATTTTTCCAACAGTTGTAATTTTCTCTTGTTTCATGGAACTTTCCAATTTGGTTGCCATCGACATCAGGGTATTCACATAGTTTCCTAAGTTTTCCAGTTCAGAAGCATTATTTATCTTGTCAATATTCTGCCTCATCAGTAGGATATCGCCGATTGTTTCGTATTCGTCATCAAATGGTTCCCGTACTTTTCTACCGTAGTTCTTGAAGTTTTGCATGCACATCTTCAATTTATCACTGTTATCTTTCAATGTTTTAACAGTTTGTTTATCCTCATTGGTATACAAAGACACGATATCCTTTTTGTCGGATAGATCATAATATTTCTTCGCATTTTCAACAACGGTCGAATCACATGCGATAAAATTGTTTTTGAAATGTATATCATTGATATGATCCAGAAACGTTTGTACATGTGAACCGATTCCTTTTTTAAATCTGTTGAAGTTCGT</canonical>
            <polymorphic>GGCTGTTTAAATCATCAAGAAAATGATTGATAACATCAGGATCTATGGTGAGAACCACTTTGTCAACCCAATTCTGGACGTCATGGACCAATGTATTCATTTTCTCGAATACCAATTTCTCAATATCGAAATTTGTGAAGTTCCGATTTCCGGGTTCCAAGGTCACATTAGCATAACAAGAACTGACAGTGTTATTGAGACTATGCAACGCATCGACATCAATATGTTGTGAGCGATCTTCTACTACTATCAGCATCTTTGCGGTGATTTCCAATTCATCACTCGATGCACTGAACTCGGCTTGAAAGTTCTTCCATCGTTCCCTCAGTTTGACCATTCTCTCTCCAAACTCGAAAAATCCATGAAGACTCTTTTCCAGTTCTTCTGTACTTTTTCCTCTAGAAATTTCCTTTTTGAACCAGTCACTTTTCAAGTCAGCAGAAACTTTGATGAGATCATCGACTTCTAGAAAGCCAGCTGTCAATGAATGAGCAGGACCRTTTTTGGTTTCAGCAATAGTTTTCAGATGCTGGATTCCTCTTTTCAACATTTTTCCAACAGTTGTAATTTTCTCTTGTTTCATGGAACTTTCCAATTTGGTTGCCATCGACATCAGGGTATTCACATAGTTTCCTAAGTTTTCCAGTTCAGAAGCATTATTTATCTTGTCAATATTCTGCCTCATCAGTAGGATATCGCCGATTGTTTCGTATTCGTCATCAAATGGTTCCCGTACTTTTCTACCGTAGTTCTTGAAGTTTTGCATGCACATCTTCAATTTATCACTGTTATCTTTCAATGTTTTAACAGTTTGTTTATCCTCATTGGTATACAAAGACACGATATCCTTTTTGTCGGATAGATCATAATATTTCTTCGCATTTTCAACAACGGTCGAATCACATGCGATAAAATTGTTTTTGAAATGTATATCATTGATATGATCCAGAAACGTTTGTACATGTGAACCGATTCCTTTTTTAAATCTGTTGAAGTTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTCTAGAAATTTCCTTTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>TGGAAAACTTAGGAAACTATGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTCTAGAAATTTCCTTTTTGAACCAGTCACTTTTCAAGTCAGCAGAAACTTTGATGAGATCATCGACTTCTAGAAAGCCAGCTGTCAATGAATGAGCAGGACCATTTTTGGTTTCAGCAATAGTTTTCAGATGCTGGATTCCTCTTTTCAACATTTTTCCAACAGTTGTAATTTTCTCTTGTTTCATGGAACTTTCCAATTTGGTTGCCATCGACATCAGGGTATTCACATAGTTTCCTAAGTTTTCCA</canonical_amplicon>
		<polymorphic_amplicon>CCTCTAGAAATTTCCTTTTTGAACCAGTCACTTTTCAAGTCAGCAGAAACTTTGATGAGATCATCGACTTCTAGAAAGCCAGCTGTCAATGAATGAGCAGGACCRTTTTTGGTTTCAGCAATAGTTTTCAGATGCTGGATTCCTCTTTTCAACATTTTTCCAACAGTTGTAATTTTCTCTTGTTTCATGGAACTTTCCAATTTGGTTGCCATCGACATCAGGGTATTCACATAGTTTCCTAAGTTTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16884</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>172795</contig_pos>
        <strand>+</strand>
        <context>AGAAAGTCAC[C/T]TATAAGTTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCACATCTTTCCATATTTACATTGACGATCGGACCGAGGAGAAAGTCAC</left_flank>
        <right_flank>TATAAGTTCATGGTCAAATTTGAATCTATTGTATGTTCTGAAAATTTCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATAACAAAGAATGTCATATGTGATGCAGTACGAGAAGTAAACTCTCAAAATCTACTTGCAGCTGTCAAATCGGGAGCCTATATCAATGTTTATAACAGTTAGTGCAATAATAAGTATTCGGAGCATACTGTTTTCATTTTCAGAGTTTGGAAATACTGGCCTGCATGTGGCAACTAAACGAGGTCACTATCAACTGGTGGATATTCTCATTCGACATGGAGCTGATCGCACACTTTTGAACGCTGAGAACAAGACTCCGGAGCAGATGATCAAAGTGATGAATACAACAATCAAAAATGAAGAAGAGAAAGAACAAGTGGATAAGTACAAGAAAGTCGAAATGATCTATAATAAGTATCGAAAGAAGAAATTTGGAAAACGTAAGGATGTGAATGAAGATATACATCGTTTCTTTGTCAATGTTTAGGTGTACCGAATACGTTTCCAACCACATCTTTCCATATTTACATTGACGATCGGACCGAGGAGAAAGTCACCTATAAGTTCATGGTCAAATTTGAATCTATTGTATGTTCTGAAAATTTCTTATTTATTCTGTTTCATTTATTTTTCAGACATCTCATGAACCACTTCCAACTACTACTCATTGTATCGTGAAAACAGATGAGAATGGGATTTTAGAGTCTGATGATTTCAATCTGCTCTCTTGGATTTTCAATGGGGTGATAATAGTGAAAGAATCCTGGATGACTGATTGTTTGCAAAATCAGAATCTGATTTCTAAAGACATTGACTATTTGGTGAATACGGTAAAATACAATGGTGTAGTCTACGATAACGCTATTCTCCCTTGGAGTTTAGCAATGGCAAAAGGAACGATGCCATATTTGTACGGTGTTCAAGTAGCAGTGGTTATGAAGGACTATCCTAATTGTAAGATAGATTTAAAATTGAATAATAATTTTGCTTCTTTTCCAGTATTCACTCTTGCTGCAGTGGTTTCCAATCTTGGCGGCTTCATGCTGAATCAGTTTCCA</canonical>
            <polymorphic>ATATAACAAAGAATGTCATATGTGATGCAGTACGAGAAGTAAACTCTCAAAATCTACTTGCAGCTGTCAAATCGGGAGCCTATATCAATGTTTATAACAGTTAGTGCAATAATAAGTATTCGGAGCATACTGTTTTCATTTTCAGAGTTTGGAAATACTGGCCTGCATGTGGCAACTAAACGAGGTCACTATCAACTGGTGGATATTCTCATTCGACATGGAGCTGATCGCACACTTTTGAACGCTGAGAACAAGACTCCGGAGCAGATGATCAAAGTGATGAATACAACAATCAAAAATGAAGAAGAGAAAGAACAAGTGGATAAGTACAAGAAAGTCGAAATGATCTATAATAAGTATCGAAAGAAGAAATTTGGAAAACGTAAGGATGTGAATGAAGATATACATCGTTTCTTTGTCAATGTTTAGGTGTACCGAATACGTTTCCAACCACATCTTTCCATATTTACATTGACGATCGGACCGAGGAGAAAGTCACYTATAAGTTCATGGTCAAATTTGAATCTATTGTATGTTCTGAAAATTTCTTATTTATTCTGTTTCATTTATTTTTCAGACATCTCATGAACCACTTCCAACTACTACTCATTGTATCGTGAAAACAGATGAGAATGGGATTTTAGAGTCTGATGATTTCAATCTGCTCTCTTGGATTTTCAATGGGGTGATAATAGTGAAAGAATCCTGGATGACTGATTGTTTGCAAAATCAGAATCTGATTTCTAAAGACATTGACTATTTGGTGAATACGGTAAAATACAATGGTGTAGTCTACGATAACGCTATTCTCCCTTGGAGTTTAGCAATGGCAAAAGGAACGATGCCATATTTGTACGGTGTTCAAGTAGCAGTGGTTATGAAGGACTATCCTAATTGTAAGATAGATTTAAAATTGAATAATAATTTTGCTTCTTTTCCAGTATTCACTCTTGCTGCAGTGGTTTCCAATCTTGGCGGCTTCATGCTGAATCAGTTTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACATCGTTTCTTTGTCAATGT</pcr_primer_p1>
		<pcr_primer_p2>ATCAGACTCTAAAATCCCATTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATACATCGTTTCTTTGTCAATGTTTAGGTGTACCGAATACGTTTCCAACCACATCTTTCCATATTTACATTGACGATCGGACCGAGGAGAAAGTCACCTATAAGTTCATGGTCAAATTTGAATCTATTGTATGTTCTGAAAATTTCTTATTTATTCTGTTTCATTTATTTTTCAGACATCTCATGAACCACTTCCAACTACTACTCATTGTATCGTGAAAACAGATGAGAATGGGATTTTAGAGTCTGAT</canonical_amplicon>
		<polymorphic_amplicon>ATACATCGTTTCTTTGTCAATGTTTAGGTGTACCGAATACGTTTCCAACCACATCTTTCCATATTTACATTGACGATCGGACCGAGGAGAAAGTCACYTATAAGTTCATGGTCAAATTTGAATCTATTGTATGTTCTGAAAATTTCTTATTTATTCTGTTTCATTTATTTTTCAGACATCTCATGAACCACTTCCAACTACTACTCATTGTATCGTGAAAACAGATGAGAATGGGATTTTAGAGTCTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16885</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>172739</contig_pos>
        <strand>+</strand>
        <context>ACCGAATACG[A/T]TTCCAACCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATGAAGATATACATCGTTTCTTTGTCAATGTTTAGGTGTACCGAATACG</left_flank>
        <right_flank>TTCCAACCACATCTTTCCATATTTACATTGACGATCGGACCGAGGAGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAATTCCAAAGGTTTAGGGGATATATTCATTTTTAGCTGTTCCTGGACAGAGTGGATATAACAAAGAATGTCATATGTGATGCAGTACGAGAAGTAAACTCTCAAAATCTACTTGCAGCTGTCAAATCGGGAGCCTATATCAATGTTTATAACAGTTAGTGCAATAATAAGTATTCGGAGCATACTGTTTTCATTTTCAGAGTTTGGAAATACTGGCCTGCATGTGGCAACTAAACGAGGTCACTATCAACTGGTGGATATTCTCATTCGACATGGAGCTGATCGCACACTTTTGAACGCTGAGAACAAGACTCCGGAGCAGATGATCAAAGTGATGAATACAACAATCAAAAATGAAGAAGAGAAAGAACAAGTGGATAAGTACAAGAAAGTCGAAATGATCTATAATAAGTATCGAAAGAAGAAATTTGGAAAACGTAAGGATGTGAATGAAGATATACATCGTTTCTTTGTCAATGTTTAGGTGTACCGAATACGTTTCCAACCACATCTTTCCATATTTACATTGACGATCGGACCGAGGAGAAAGTCACCTATAAGTTCATGGTCAAATTTGAATCTATTGTATGTTCTGAAAATTTCTTATTTATTCTGTTTCATTTATTTTTCAGACATCTCATGAACCACTTCCAACTACTACTCATTGTATCGTGAAAACAGATGAGAATGGGATTTTAGAGTCTGATGATTTCAATCTGCTCTCTTGGATTTTCAATGGGGTGATAATAGTGAAAGAATCCTGGATGACTGATTGTTTGCAAAATCAGAATCTGATTTCTAAAGACATTGACTATTTGGTGAATACGGTAAAATACAATGGTGTAGTCTACGATAACGCTATTCTCCCTTGGAGTTTAGCAATGGCAAAAGGAACGATGCCATATTTGTACGGTGTTCAAGTAGCAGTGGTTATGAAGGACTATCCTAATTGTAAGATAGATTTAAAATTGAATAATAATTTTGCTTCTTTTCCAGTAT</canonical>
            <polymorphic>CTAATTCCAAAGGTTTAGGGGATATATTCATTTTTAGCTGTTCCTGGACAGAGTGGATATAACAAAGAATGTCATATGTGATGCAGTACGAGAAGTAAACTCTCAAAATCTACTTGCAGCTGTCAAATCGGGAGCCTATATCAATGTTTATAACAGTTAGTGCAATAATAAGTATTCGGAGCATACTGTTTTCATTTTCAGAGTTTGGAAATACTGGCCTGCATGTGGCAACTAAACGAGGTCACTATCAACTGGTGGATATTCTCATTCGACATGGAGCTGATCGCACACTTTTGAACGCTGAGAACAAGACTCCGGAGCAGATGATCAAAGTGATGAATACAACAATCAAAAATGAAGAAGAGAAAGAACAAGTGGATAAGTACAAGAAAGTCGAAATGATCTATAATAAGTATCGAAAGAAGAAATTTGGAAAACGTAAGGATGTGAATGAAGATATACATCGTTTCTTTGTCAATGTTTAGGTGTACCGAATACGWTTCCAACCACATCTTTCCATATTTACATTGACGATCGGACCGAGGAGAAAGTCACCTATAAGTTCATGGTCAAATTTGAATCTATTGTATGTTCTGAAAATTTCTTATTTATTCTGTTTCATTTATTTTTCAGACATCTCATGAACCACTTCCAACTACTACTCATTGTATCGTGAAAACAGATGAGAATGGGATTTTAGAGTCTGATGATTTCAATCTGCTCTCTTGGATTTTCAATGGGGTGATAATAGTGAAAGAATCCTGGATGACTGATTGTTTGCAAAATCAGAATCTGATTTCTAAAGACATTGACTATTTGGTGAATACGGTAAAATACAATGGTGTAGTCTACGATAACGCTATTCTCCCTTGGAGTTTAGCAATGGCAAAAGGAACGATGCCATATTTGTACGGTGTTCAAGTAGCAGTGGTTATGAAGGACTATCCTAATTGTAAGATAGATTTAAAATTGAATAATAATTTTGCTTCTTTTCCAGTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>503 437 60</canonical_bands>
                <polymorphic_bands>563 437</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGTAAGGATGTGAATGAAGATA</pcr_primer_p1>
		<pcr_primer_p2>ATCTGTTTTCACGATACAATGAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACGTAAGGATGTGAATGAAGATATACATCGTTTCTTTGTCAATGTTTAGGTGTACCGAATACGTTTCCAACCACATCTTTCCATATTTACATTGACGATCGGACCGAGGAGAAAGTCACCTATAAGTTCATGGTCAAATTTGAATCTATTGTATGTTCTGAAAATTTCTTATTTATTCTGTTTCATTTATTTTTCAGACATCTCATGAACCACTTCCAACTACTACTCATTGTATCGTGAAAACAGAT</canonical_amplicon>
		<polymorphic_amplicon>ACGTAAGGATGTGAATGAAGATATACATCGTTTCTTTGTCAATGTTTAGGTGTACCGAATACGWTTCCAACCACATCTTTCCATATTTACATTGACGATCGGACCGAGGAGAAAGTCACCTATAAGTTCATGGTCAAATTTGAATCTATTGTATGTTCTGAAAATTTCTTATTTATTCTGTTTCATTTATTTTTCAGACATCTCATGAACCACTTCCAACTACTACTCATTGTATCGTGAAAACAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16886</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>172482</contig_pos>
        <strand>+</strand>
        <context>TAAACGAGGT[A/C]ACTATCAACT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATTTTCAGAGTTTGGAAATACTGGCCTGCATGTGGCAACTAAACGAGGT</left_flank>
        <right_flank>ACTATCAACTGGTGGATATTCTCATTCGACATGGAGCTGATCGCACACTT</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTGAAACCAACAGCAGGTGTCACACGAATGTAAGCTCTTTTTTGGACAATATTTTTAAATATCTTGGTTTTTACAGAATTTCTGATCCATTTAATACTATCATCGGTTGTGTAGTCGTTGTCATTCTTCTTGGTATCGGATTCATTTTAATTTACGGTTTGACGAAAAATGGAAAAGAGAGATACAAGAAACTGTATTTGTATTATTTTGGAAAACAGGAAGATTTTGAGAAAAGATGGAGATATTCTGTAAGTTTCTAATTCCAAAGGTTTAGGGGATATATTCATTTTTAGCTGTTCCTGGACAGAGTGGATATAACAAAGAATGTCATATGTGATGCAGTACGAGAAGTAAACTCTCAAAATCTACTTGCAGCTGTCAAATCGGGAGCCTATATCAATGTTTATAACAGTTAGTGCAATAATAAGTATTCGGAGCATACTGTTTTCATTTTCAGAGTTTGGAAATACTGGCCTGCATGTGGCAACTAAACGAGGTCACTATCAACTGGTGGATATTCTCATTCGACATGGAGCTGATCGCACACTTTTGAACGCTGAGAACAAGACTCCGGAGCAGATGATCAAAGTGATGAATACAACAATCAAAAATGAAGAAGAGAAAGAACAAGTGGATAAGTACAAGAAAGTCGAAATGATCTATAATAAGTATCGAAAGAAGAAATTTGGAAAACGTAAGGATGTGAATGAAGATATACATCGTTTCTTTGTCAATGTTTAGGTGTACCGAATACGTTTCCAACCACATCTTTCCATATTTACATTGACGATCGGACCGAGGAGAAAGTCACCTATAAGTTCATGGTCAAATTTGAATCTATTGTATGTTCTGAAAATTTCTTATTTATTCTGTTTCATTTATTTTTCAGACATCTCATGAACCACTTCCAACTACTACTCATTGTATCGTGAAAACAGATGAGAATGGGATTTTAGAGTCTGATGATTTCAATCTGCTCTCTTGGATTTTCAATGGGGT</canonical>
            <polymorphic>AGTGAAACCAACAGCAGGTGTCACACGAATGTAAGCTCTTTTTTGGACAATATTTTTAAATATCTTGGTTTTTACAGAATTTCTGATCCATTTAATACTATCATCGGTTGTGTAGTCGTTGTCATTCTTCTTGGTATCGGATTCATTTTAATTTACGGTTTGACGAAAAATGGAAAAGAGAGATACAAGAAACTGTATTTGTATTATTTTGGAAAACAGGAAGATTTTGAGAAAAGATGGAGATATTCTGTAAGTTTCTAATTCCAAAGGTTTAGGGGATATATTCATTTTTAGCTGTTCCTGGACAGAGTGGATATAACAAAGAATGTCATATGTGATGCAGTACGAGAAGTAAACTCTCAAAATCTACTTGCAGCTGTCAAATCGGGAGCCTATATCAATGTTTATAACAGTTAGTGCAATAATAAGTATTCGGAGCATACTGTTTTCATTTTCAGAGTTTGGAAATACTGGCCTGCATGTGGCAACTAAACGAGGTMACTATCAACTGGTGGATATTCTCATTCGACATGGAGCTGATCGCACACTTTTGAACGCTGAGAACAAGACTCCGGAGCAGATGATCAAAGTGATGAATACAACAATCAAAAATGAAGAAGAGAAAGAACAAGTGGATAAGTACAAGAAAGTCGAAATGATCTATAATAAGTATCGAAAGAAGAAATTTGGAAAACGTAAGGATGTGAATGAAGATATACATCGTTTCTTTGTCAATGTTTAGGTGTACCGAATACGTTTCCAACCACATCTTTCCATATTTACATTGACGATCGGACCGAGGAGAAAGTCACCTATAAGTTCATGGTCAAATTTGAATCTATTGTATGTTCTGAAAATTTCTTATTTATTCTGTTTCATTTATTTTTCAGACATCTCATGAACCACTTCCAACTACTACTCATTGTATCGTGAAAACAGATGAGAATGGGATTTTAGAGTCTGATGATTTCAATCTGCTCTCTTGGATTTTCAATGGGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>200 94 87 82 72 68 65 45 45 42 39 31 27 25 21 17 16 13 4 3 2 2</canonical_bands>
                <polymorphic_bands>200 94 87 82 72 68 65 45 45 42 39 31 30 27 25 21 16 4 3 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>478 310 193 19</canonical_bands>
                <polymorphic_bands>788 193 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTGTTTTCATTTTCAGAGTTTG</pcr_primer_p1>
		<pcr_primer_p2>CCAAATTTCTTCTTTCGATACTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTGTTTTCATTTTCAGAGTTTGGAAATACTGGCCTGCATGTGGCAACTAAACGAGGTCACTATCAACTGGTGGATATTCTCATTCGACATGGAGCTGATCGCACACTTTTGAACGCTGAGAACAAGACTCCGGAGCAGATGATCAAAGTGATGAATACAACAATCAAAAATGAAGAAGAGAAAGAACAAGTGGATAAGTACAAGAAAGTCGAAATGATCTATAATAAGTATCGAAAGAAGAAATTTGG</canonical_amplicon>
		<polymorphic_amplicon>ACTGTTTTCATTTTCAGAGTTTGGAAATACTGGCCTGCATGTGGCAACTAAACGAGGTMACTATCAACTGGTGGATATTCTCATTCGACATGGAGCTGATCGCACACTTTTGAACGCTGAGAACAAGACTCCGGAGCAGATGATCAAAGTGATGAATACAACAATCAAAAATGAAGAAGAGAAAGAACAAGTGGATAAGTACAAGAAAGTCGAAATGATCTATAATAAGTATCGAAAGAAGAAATTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16887</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>184284</contig_pos>
        <strand></strand>
        <context>TGGGGAAAAG[C/A]MTTTTAATGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AGATCTTGACGGTCATTATGAGATCGTTGAGCCAAAGTTCTGGGGAAAAG</left_flank>
        <right_flank>ATTTTAATGGACACTTTGAAAGCTATAAATAAATTTATCCTTTTTTCAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCATGCATTCCCAGAATAGAGCATAGTCGTTCTTGTTGGCAGAAGCAACTTTTAATAGTTCGGTCCATTTTGAAAGCCTGATCGTAGAATCTGATGTACTTCGACTCGCAACCACCTCCACAGTTGTATGGATTACAGTCTCCATCGATTGGTCCTTTACACCATTTTGAATTGTATTCGTATTTCCTTGGTTGGCTGAAACAATACCGTTCAAAGGTCAATGCAAGTGTAACCGGATCTGAGATTGTCAACTACGATATCCCTGATATTTTACACTTTTTTTGCTACAACTCTCCCACTTTTTTCTCATTTTCCCAACACACTCATCGACCTTTTTGGAATCCCTAAATGTAACATTTTATTTAGTTGCGAGTGTGATCATCACATCTGGTTGACGGCAAGCGGGGGAGACCGAAAGACCGCCCGTATCGCTTGAAAAAAAGAGGAAGAGATCTTGACGGTCATTATGAGATCGTTGAGCCAAAGTTCTGGGGAAAAGCATTTTAATGGACACTTTGAAAGCTATAAATAAATTTATCCTTTTTTCAAAAATGTCAAGGTTTTCATGTGAAGTGTCAATCAGAGTTATCAGTTGAAATAAGCTTTCTTCTTTTATGTCCAATGTTTGGAATGACGTATTTGTATAACTGAATTTCAAGTTTACTTCTGACTGCAAAAGGTTGTTGGTCAGCGACCTCAAAGTGTTTCGGACTACAGTAATCTTGTCTTTAAGATCTTTTTATTACCACCAAAACATGAATTCAAAAGTCTGAATTCATTAAACAGTACCTGGACAAACTGTTTGAAGATGTTTCAACTATTTCCAACTGCTTGAAAAGTAATACCAAAGTGAGAAGTAGGTTCCTGATTGATAGTGTCATCAGTAGTTGTTGATCTCTGAAGATTAAATGATACTGATAAGAAAAAAGAGCAAGGGAGTGAAATGAAGATGGGGGACTCCAAGGAAGACGAAGAAGCTTGACAACTGACACTGGTCAGA</canonical>
            <polymorphic>GCATGCATTCCCAGAATAGAGCATAGTCGTTCTTGTTGGCAGAAGCAACTTTTAATAGTTCGGTCCATTTTGAAAGCCTGATCGTAGAATCTGATGTACTTCGACTCGCAACCACCTCCACAGTTGTATGGATTACAGTCTCCATCGATTGGTCCTTTACACCATTTTGAATTGTATTCGTATTTCCTTGGTTGGCTGAAACAATACCGTTCAAAGGTCAATGCAAGTGTAACCGGATCTGAGATTGTCAACTACGATATCCCTGATATTTTACACTTTTTTTGCTACAACTCTCCCACTTTTTTCTCATTTTCCCAACACACTCATCGACCTTTTTGGAATCCCTAAATGTAACATTTTATTTAGTTGCGAGTGTGATCATCACATCTGGTTGACGGCAAGCGGGGGAGACCGAAAGACCGCCCGTATCGCTTGAAAAAAAGAGGAAGAGATCTTGACGGTCATTATGAGATCGTTGAGCCAAAGTTCTGGGGAAAAGMATTTTAATGGACACTTTGAAAGCTATAAATAAATTTATCCTTTTTTCAAAAATGTCAAGGTTTTCATGTGAAGTGTCAATCAGAGTTATCAGTTGAAATAAGCTTTCTTCTTTTATGTCCAATGTTTGGAATGACGTATTTGTATAACTGAATTTCAAGTTTACTTCTGACTGCAAAAGGTTGTTGGTCAGCGACCTCAAAGTGTTTCGGACTACAGTAATCTTGTCTTTAAGATCTTTTTATTACCACCAAAACATGAATTCAAAAGTCTGAATTCATTAAACAGTACCTGGACAAACTGTTTGAAGATGTTTCAACTATTTCCAACTGCTTGAAAAGTAATACCAAAGTGAGAAGTAGGTTCCTGATTGATAGTGTCATCAGTAGTTGTTGATCTCTGAAGATTAAATGATACTGATAAGAAAAAAGAGCAAGGGAGTGAAATGAAGATGGGGGACTCCAAGGAAGACGAAGAAGCTTGACAACTGACACTGGTCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACATTTTATTTAGTTGCGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCAACTGATAACTCTGATTGACA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AACATTTTATTTAGTTGCGAGTGTGATCATCACATCTGGTTGACGGCAAGCGGGGGAGACCGAAAGACCGCCCGTATCGCTTGAAAAAAAGAGGAAGAGATCTTGACGGTCATTATGAGATCGTTGAGCCAAAGTTCTGGGGAAAAGCATTTTAATGGACACTTTGAAAGCTATAAATAAATTTATCCTTTTTTCAAAAATGTCAAGGTTTTCATGTGAAGTGTCAATCAGAGTTATCAGTTGA</canonical_amplicon>
		<polymorphic_amplicon>AACATTTTATTTAGTTGCGAGTGTGATCATCACATCTGGTTGACGGCAAGCGGGGGAGACCGAAAGACCGCCCGTATCGCTTGAAAAAAAGAGGAAGAGATCTTGACGGTCATTATGAGATCGTTGAGCCAAAGTTCTGGGGAAAAGMATTTTAATGGACACTTTGAAAGCTATAAATAAATTTATCCTTTTTTCAAAAATGTCAAGGTTTTCATGTGAAGTGTCAATCAGAGTTATCAGTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16888</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>184121</contig_pos>
        <strand>+</strand>
        <context>TCGACCTTTT[C/T]GGAATCCCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAACTCTCCCACTTTTTTCTCATTTTCCCAACACACTCATCGACCTTTT</left_flank>
        <right_flank>GGAATCCCTAAATGTAACATTTTATTTAGTTGCGAGTGTGATCATCACAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGACGAACACTATTGGAATGACGATTCTTGTGGTCACGACGATCCATGCTCCAGTATCTGAAGATCATTCGGTTCGATATTTTCGAAATTTATAAAATATTTACCTGACAAACTTCTGAGCAACAGAGCTCAACTGGTAGTATGATTTACATCCGCTAAATGCATGCATTCCCAGAATAGAGCATAGTCGTTCTTGTTGGCAGAAGCAACTTTTAATAGTTCGGTCCATTTTGAAAGCCTGATCGTAGAATCTGATGTACTTCGACTCGCAACCACCTCCACAGTTGTATGGATTACAGTCTCCATCGATTGGTCCTTTACACCATTTTGAATTGTATTCGTATTTCCTTGGTTGGCTGAAACAATACCGTTCAAAGGTCAATGCAAGTGTAACCGGATCTGAGATTGTCAACTACGATATCCCTGATATTTTACACTTTTTTTGCTACAACTCTCCCACTTTTTTCTCATTTTCCCAACACACTCATCGACCTTTTTGGAATCCCTAAATGTAACATTTTATTTAGTTGCGAGTGTGATCATCACATCTGGTTGACGGCAAGCGGGGGAGACCGAAAGACCGCCCGTATCGCTTGAAAAAAAGAGGAAGAGATCTTGACGGTCATTATGAGATCGTTGAGCCAAAGTTCTGGGGAAAAGCATTTTAATGGACACTTTGAAAGCTATAAATAAATTTATCCTTTTTTCAAAAATGTCAAGGTTTTCATGTGAAGTGTCAATCAGAGTTATCAGTTGAAATAAGCTTTCTTCTTTTATGTCCAATGTTTGGAATGACGTATTTGTATAACTGAATTTCAAGTTTACTTCTGACTGCAAAAGGTTGTTGGTCAGCGACCTCAAAGTGTTTCGGACTACAGTAATCTTGTCTTTAAGATCTTTTTATTACCACCAAAACATGAATTCAAAAGTCTGAATTCATTAAACAGTACCTGGACAAACTGTTTGAAGATGTTTCAACTATTTCCAACTGCTTGAAA</canonical>
            <polymorphic>GATGACGAACACTATTGGAATGACGATTCTTGTGGTCACGACGATCCATGCTCCAGTATCTGAAGATCATTCGGTTCGATATTTTCGAAATTTATAAAATATTTACCTGACAAACTTCTGAGCAACAGAGCTCAACTGGTAGTATGATTTACATCCGCTAAATGCATGCATTCCCAGAATAGAGCATAGTCGTTCTTGTTGGCAGAAGCAACTTTTAATAGTTCGGTCCATTTTGAAAGCCTGATCGTAGAATCTGATGTACTTCGACTCGCAACCACCTCCACAGTTGTATGGATTACAGTCTCCATCGATTGGTCCTTTACACCATTTTGAATTGTATTCGTATTTCCTTGGTTGGCTGAAACAATACCGTTCAAAGGTCAATGCAAGTGTAACCGGATCTGAGATTGTCAACTACGATATCCCTGATATTTTACACTTTTTTTGCTACAACTCTCCCACTTTTTTCTCATTTTCCCAACACACTCATCGACCTTTTYGGAATCCCTAAATGTAACATTTTATTTAGTTGCGAGTGTGATCATCACATCTGGTTGACGGCAAGCGGGGGAGACCGAAAGACCGCCCGTATCGCTTGAAAAAAAGAGGAAGAGATCTTGACGGTCATTATGAGATCGTTGAGCCAAAGTTCTGGGGAAAAGCATTTTAATGGACACTTTGAAAGCTATAAATAAATTTATCCTTTTTTCAAAAATGTCAAGGTTTTCATGTGAAGTGTCAATCAGAGTTATCAGTTGAAATAAGCTTTCTTCTTTTATGTCCAATGTTTGGAATGACGTATTTGTATAACTGAATTTCAAGTTTACTTCTGACTGCAAAAGGTTGTTGGTCAGCGACCTCAAAGTGTTTCGGACTACAGTAATCTTGTCTTTAAGATCTTTTTATTACCACCAAAACATGAATTCAAAAGTCTGAATTCATTAAACAGTACCTGGACAAACTGTTTGAAGATGTTTCAACTATTTCCAACTGCTTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTACAACTCTCCCACTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTATAGCTTTCAAAGTGTCCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GCTACAACTCTCCCACTTTTTTCTCATTTTCCCAACACACTCATCGACCTTTTTGGAATCCCTAAATGTAACATTTTATTTAGTTGCGAGTGTGATCATCACATCTGGTTGACGGCAAGCGGGGGAGACCGAAAGACCGCCCGTATCGCTTGAAAAAAAGAGGAAGAGATCTTGACGGTCATTATGAGATCGTTGAGCCAAAGTTCTGGGGAAAAGCATTTTAATGGACACTTTGAAAGCTATAAAT</canonical_amplicon>
		<polymorphic_amplicon>GCTACAACTCTCCCACTTTTTTCTCATTTTCCCAACACACTCATCGACCTTTTYGGAATCCCTAAATGTAACATTTTATTTAGTTGCGAGTGTGATCATCACATCTGGTTGACGGCAAGCGGGGGAGACCGAAAGACCGCCCGTATCGCTTGAAAAAAAGAGGAAGAGATCTTGACGGTCATTATGAGATCGTTGAGCCAAAGTTCTGGGGAAAAGCATTTTAATGGACACTTTGAAAGCTATAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16889</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>188897</contig_pos>
        <strand>+</strand>
        <context>TGGCCCCCAA[A/G]AAAGTTTAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTCTCTCATCTGTACTGTGATAATACGATTTATTGTATGGCCCCCAA</left_flank>
        <right_flank>AAAGTTTAAAATATGTTAACCATAAGAGATTGTAAACGACTCCTTCCCAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGCAACCACTGTTCTTTATACACTCCCGCTATTCTGATCAATGATTTCCTCTTTGAAGCCGATAACGTTGAAGACGCGCAAAAGAATTTCGACGATATGATGGACTTGCAAACGAGCATTGGTGAGTGATCCTAATTTCGACTGATATATAGTCATTTGTTCTCAGAGCATGTTGATGAAGGATGGGAACGTGCGTTGACTCCTGAAGAGATGGAATCAGTGCGAACACCAATCGAAGATCTTCATTTCGTGGATTACGATGGATCGAGCGATTCCTGGTGTACTACGAAAACTCTTCTTATCACAATTGCCATGATTATCGGAATTTTAGCTTCTATCATTTATTTCACCGTTGCCCATTCTTGAGATGTTTCATGTTTACGAAATTGTGCATTTTGCACCACCTTCTCCATGCCATTGCATATTTTCAAGTATTTATTTTTTCGTTTTTTCTCTCATCTGTACTGTGATAATACGATTTATTGTATGGCCCCCAAGAAAGTTTAAAATATGTTAACCATAAGAGATTGTAAACGACTCCTTCCCAAAAAATTTAATAAAGTTGAGTGTTAGATGTGGGATGTTTGTCCGTTGCAACGAATGGTAGCTCCTGTGACGAAGGAACTGAGGTCTTTGGCAGATTGGGCAAAGCTGGAAGAAAACATATGAGACTACCATTTTTTTTGAAAGGAAACTTACAGCTGAGCAATTCCACAATCGGCATCAGTGAACATGTATTTGAGAACACTTGCTCCTTCGAATCCAGTGGTCACTTGTCGATGGGCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGC</canonical>
            <polymorphic>CCAGCAACCACTGTTCTTTATACACTCCCGCTATTCTGATCAATGATTTCCTCTTTGAAGCCGATAACGTTGAAGACGCGCAAAAGAATTTCGACGATATGATGGACTTGCAAACGAGCATTGGTGAGTGATCCTAATTTCGACTGATATATAGTCATTTGTTCTCAGAGCATGTTGATGAAGGATGGGAACGTGCGTTGACTCCTGAAGAGATGGAATCAGTGCGAACACCAATCGAAGATCTTCATTTCGTGGATTACGATGGATCGAGCGATTCCTGGTGTACTACGAAAACTCTTCTTATCACAATTGCCATGATTATCGGAATTTTAGCTTCTATCATTTATTTCACCGTTGCCCATTCTTGAGATGTTTCATGTTTACGAAATTGTGCATTTTGCACCACCTTCTCCATGCCATTGCATATTTTCAAGTATTTATTTTTTCGTTTTTTCTCTCATCTGTACTGTGATAATACGATTTATTGTATGGCCCCCAARAAAGTTTAAAATATGTTAACCATAAGAGATTGTAAACGACTCCTTCCCAAAAAATTTAATAAAGTTGAGTGTTAGATGTGGGATGTTTGTCCGTTGCAACGAATGGTAGCTCCTGTGACGAAGGAACTGAGGTCTTTGGCAGATTGGGCAAAGCTGGAAGAAAACATATGAGACTACCATTTTTTTTGAAAGGAAACTTACAGCTGAGCAATTCCACAATCGGCATCAGTGAACATGTATTTGAGAACACTTGCTCCTTCGAATCCAGTGGTCACTTGTCGATGGGCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAGCTTCTATCATTTATTTCACC</pcr_primer_p1>
		<pcr_primer_p2>CCCACATCTAACACTCAACTTTA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTTAGCTTCTATCATTTATTTCACCGTTGCCCATTCTTGAGATGTTTCATGTTTACGAAATTGTGCATTTTGCACCACCTTCTCCATGCCATTGCATATTTTCAAGTATTTATTTTTTCGTTTTTTCTCTCATCTGTACTGTGATAATACGATTTATTGTATGGCCCCCAAGAAAGTTTAAAATATGTTAACCATAAGAGATTGTAAACGACTCCTTCCCAAAAAATTTAATAAAGTTGAGTGTTAGATGTGGG</canonical_amplicon>
		<polymorphic_amplicon>TTTAGCTTCTATCATTTATTTCACCGTTGCCCATTCTTGAGATGTTTCATGTTTACGAAATTGTGCATTTTGCACCACCTTCTCCATGCCATTGCATATTTTCAAGTATTTATTTTTTCGTTTTTTCTCTCATCTGTACTGTGATAATACGATTTATTGTATGGCCCCCAARAAAGTTTAAAATATGTTAACCATAAGAGATTGTAAACGACTCCTTCCCAAAAAATTTAATAAAGTTGAGTGTTAGATGTGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16890</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>188997</contig_pos>
        <strand>+</strand>
        <context>TCCGTTGCAA[C/T]GAATGGTAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATTTAATAAAGTTGAGTGTTAGATGTGGGATGTTTGTCCGTTGCAA</left_flank>
        <right_flank>GAATGGTAGCTCCTGTGACGAAGGAACTGAGGTCTTTGGCAGATTGGGCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGGACTTGCAAACGAGCATTGGTGAGTGATCCTAATTTCGACTGATATATAGTCATTTGTTCTCAGAGCATGTTGATGAAGGATGGGAACGTGCGTTGACTCCTGAAGAGATGGAATCAGTGCGAACACCAATCGAAGATCTTCATTTCGTGGATTACGATGGATCGAGCGATTCCTGGTGTACTACGAAAACTCTTCTTATCACAATTGCCATGATTATCGGAATTTTAGCTTCTATCATTTATTTCACCGTTGCCCATTCTTGAGATGTTTCATGTTTACGAAATTGTGCATTTTGCACCACCTTCTCCATGCCATTGCATATTTTCAAGTATTTATTTTTTCGTTTTTTCTCTCATCTGTACTGTGATAATACGATTTATTGTATGGCCCCCAAGAAAGTTTAAAATATGTTAACCATAAGAGATTGTAAACGACTCCTTCCCAAAAAATTTAATAAAGTTGAGTGTTAGATGTGGGATGTTTGTCCGTTGCAACGAATGGTAGCTCCTGTGACGAAGGAACTGAGGTCTTTGGCAGATTGGGCAAAGCTGGAAGAAAACATATGAGACTACCATTTTTTTTGAAAGGAAACTTACAGCTGAGCAATTCCACAATCGGCATCAGTGAACATGTATTTGAGAACACTTGCTCCTTCGAATCCAGTGGTCACTTGTCGATGGGCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTC</canonical>
            <polymorphic>GATGGACTTGCAAACGAGCATTGGTGAGTGATCCTAATTTCGACTGATATATAGTCATTTGTTCTCAGAGCATGTTGATGAAGGATGGGAACGTGCGTTGACTCCTGAAGAGATGGAATCAGTGCGAACACCAATCGAAGATCTTCATTTCGTGGATTACGATGGATCGAGCGATTCCTGGTGTACTACGAAAACTCTTCTTATCACAATTGCCATGATTATCGGAATTTTAGCTTCTATCATTTATTTCACCGTTGCCCATTCTTGAGATGTTTCATGTTTACGAAATTGTGCATTTTGCACCACCTTCTCCATGCCATTGCATATTTTCAAGTATTTATTTTTTCGTTTTTTCTCTCATCTGTACTGTGATAATACGATTTATTGTATGGCCCCCAAGAAAGTTTAAAATATGTTAACCATAAGAGATTGTAAACGACTCCTTCCCAAAAAATTTAATAAAGTTGAGTGTTAGATGTGGGATGTTTGTCCGTTGCAAYGAATGGTAGCTCCTGTGACGAAGGAACTGAGGTCTTTGGCAGATTGGGCAAAGCTGGAAGAAAACATATGAGACTACCATTTTTTTTGAAAGGAAACTTACAGCTGAGCAATTCCACAATCGGCATCAGTGAACATGTATTTGAGAACACTTGCTCCTTCGAATCCAGTGGTCACTTGTCGATGGGCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTCATCTGTACTGTGATAATACG</pcr_primer_p1>
		<pcr_primer_p2>GCTGTAAGTTTCCTTTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTCATCTGTACTGTGATAATACGATTTATTGTATGGCCCCCAAGAAAGTTTAAAATATGTTAACCATAAGAGATTGTAAACGACTCCTTCCCAAAAAATTTAATAAAGTTGAGTGTTAGATGTGGGATGTTTGTCCGTTGCAACGAATGGTAGCTCCTGTGACGAAGGAACTGAGGTCTTTGGCAGATTGGGCAAAGCTGGAAGAAAACATATGAGACTACCATTTTTTTTGAAAGGAAACTTACAGC</canonical_amplicon>
		<polymorphic_amplicon>CTCTCATCTGTACTGTGATAATACGATTTATTGTATGGCCCCCAAGAAAGTTTAAAATATGTTAACCATAAGAGATTGTAAACGACTCCTTCCCAAAAAATTTAATAAAGTTGAGTGTTAGATGTGGGATGTTTGTCCGTTGCAAYGAATGGTAGCTCCTGTGACGAAGGAACTGAGGTCTTTGGCAGATTGGGCAAAGCTGGAAGAAAACATATGAGACTACCATTTTTTTTGAAAGGAAACTTACAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16891</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>189169</contig_pos>
        <strand>+</strand>
        <context>AATCCAGTGG[C/T]CACTTGTCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCATCAGTGAACATGTATTTGAGAACACTTGCTCCTTCGAATCCAGTGG</left_flank>
        <right_flank>CACTTGTCGATGGGCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTCCTGGTGTACTACGAAAACTCTTCTTATCACAATTGCCATGATTATCGGAATTTTAGCTTCTATCATTTATTTCACCGTTGCCCATTCTTGAGATGTTTCATGTTTACGAAATTGTGCATTTTGCACCACCTTCTCCATGCCATTGCATATTTTCAAGTATTTATTTTTTCGTTTTTTCTCTCATCTGTACTGTGATAATACGATTTATTGTATGGCCCCCAAGAAAGTTTAAAATATGTTAACCATAAGAGATTGTAAACGACTCCTTCCCAAAAAATTTAATAAAGTTGAGTGTTAGATGTGGGATGTTTGTCCGTTGCAACGAATGGTAGCTCCTGTGACGAAGGAACTGAGGTCTTTGGCAGATTGGGCAAAGCTGGAAGAAAACATATGAGACTACCATTTTTTTTGAAAGGAAACTTACAGCTGAGCAATTCCACAATCGGCATCAGTGAACATGTATTTGAGAACACTTGCTCCTTCGAATCCAGTGGTCACTTGTCGATGGGCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAGCCCTTTTATACCAGTTCAAGTGTTGACTGACCATTTCACTTTTTATATGACTCTATTGTTAAGGTTGTTTGATATTAACACATTTACTGTAGTCGTCCTGATCAAATAGTACTACTGTTTGATGACACTAGGAAATTTGTTGGTTGGAAAAATGCAAATCATGTTGTGGT</canonical>
            <polymorphic>GATTCCTGGTGTACTACGAAAACTCTTCTTATCACAATTGCCATGATTATCGGAATTTTAGCTTCTATCATTTATTTCACCGTTGCCCATTCTTGAGATGTTTCATGTTTACGAAATTGTGCATTTTGCACCACCTTCTCCATGCCATTGCATATTTTCAAGTATTTATTTTTTCGTTTTTTCTCTCATCTGTACTGTGATAATACGATTTATTGTATGGCCCCCAAGAAAGTTTAAAATATGTTAACCATAAGAGATTGTAAACGACTCCTTCCCAAAAAATTTAATAAAGTTGAGTGTTAGATGTGGGATGTTTGTCCGTTGCAACGAATGGTAGCTCCTGTGACGAAGGAACTGAGGTCTTTGGCAGATTGGGCAAAGCTGGAAGAAAACATATGAGACTACCATTTTTTTTGAAAGGAAACTTACAGCTGAGCAATTCCACAATCGGCATCAGTGAACATGTATTTGAGAACACTTGCTCCTTCGAATCCAGTGGYCACTTGTCGATGGGCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAGCCCTTTTATACCAGTTCAAGTGTTGACTGACCATTTCACTTTTTATATGACTCTATTGTTAAGGTTGTTTGATATTAACACATTTACTGTAGTCGTCCTGATCAAATAGTACTACTGTTTGATGACACTAGGAAATTTGTTGGTTGGAAAAATGCAAATCATGTTGTGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 342 156</canonical_bands>
                <polymorphic_bands>658 342</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>502 342 156</canonical_bands>
                <polymorphic_bands>658 342</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCTGGAAGAAAACATATGAG</pcr_primer_p1>
		<pcr_primer_p2>GAACTTCAAACAACTTTGACATC</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>AAGCTGGAAGAAAACATATGAGACTACCATTTTTTTTGAAAGGAAACTTACAGCTGAGCAATTCCACAATCGGCATCAGTGAACATGTATTTGAGAACACTTGCTCCTTCGAATCCAGTGGTCACTTGTCGATGGGCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTC</canonical_amplicon>
		<polymorphic_amplicon>AAGCTGGAAGAAAACATATGAGACTACCATTTTTTTTGAAAGGAAACTTACAGCTGAGCAATTCCACAATCGGCATCAGTGAACATGTATTTGAGAACACTTGCTCCTTCGAATCCAGTGGYCACTTGTCGATGGGCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16892</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>189235</contig_pos>
        <strand>+</strand>
        <context>TCGATTTTCG[A/C]GAATTCCACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCG</left_flank>
        <right_flank>GAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCATTTATTTCACCGTTGCCCATTCTTGAGATGTTTCATGTTTACGAAATTGTGCATTTTGCACCACCTTCTCCATGCCATTGCATATTTTCAAGTATTTATTTTTTCGTTTTTTCTCTCATCTGTACTGTGATAATACGATTTATTGTATGGCCCCCAAGAAAGTTTAAAATATGTTAACCATAAGAGATTGTAAACGACTCCTTCCCAAAAAATTTAATAAAGTTGAGTGTTAGATGTGGGATGTTTGTCCGTTGCAACGAATGGTAGCTCCTGTGACGAAGGAACTGAGGTCTTTGGCAGATTGGGCAAAGCTGGAAGAAAACATATGAGACTACCATTTTTTTTGAAAGGAAACTTACAGCTGAGCAATTCCACAATCGGCATCAGTGAACATGTATTTGAGAACACTTGCTCCTTCGAATCCAGTGGTCACTTGTCGATGGGCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAGCCCTTTTATACCAGTTCAAGTGTTGACTGACCATTTCACTTTTTATATGACTCTATTGTTAAGGTTGTTTGATATTAACACATTTACTGTAGTCGTCCTGATCAAATAGTACTACTGTTTGATGACACTAGGAAATTTGTTGGTTGGAAAAATGCAAATCATGTTGTGGTTTCTAAGAGATATTATTCTCGTACAGAAAAATCGGAGCTGTGGAAGAGATACTTCGGTAGGCCGAA</canonical>
            <polymorphic>ATCATTTATTTCACCGTTGCCCATTCTTGAGATGTTTCATGTTTACGAAATTGTGCATTTTGCACCACCTTCTCCATGCCATTGCATATTTTCAAGTATTTATTTTTTCGTTTTTTCTCTCATCTGTACTGTGATAATACGATTTATTGTATGGCCCCCAAGAAAGTTTAAAATATGTTAACCATAAGAGATTGTAAACGACTCCTTCCCAAAAAATTTAATAAAGTTGAGTGTTAGATGTGGGATGTTTGTCCGTTGCAACGAATGGTAGCTCCTGTGACGAAGGAACTGAGGTCTTTGGCAGATTGGGCAAAGCTGGAAGAAAACATATGAGACTACCATTTTTTTTGAAAGGAAACTTACAGCTGAGCAATTCCACAATCGGCATCAGTGAACATGTATTTGAGAACACTTGCTCCTTCGAATCCAGTGGTCACTTGTCGATGGGCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGMGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAGCCCTTTTATACCAGTTCAAGTGTTGACTGACCATTTCACTTTTTATATGACTCTATTGTTAAGGTTGTTTGATATTAACACATTTACTGTAGTCGTCCTGATCAAATAGTACTACTGTTTGATGACACTAGGAAATTTGTTGGTTGGAAAAATGCAAATCATGTTGTGGTTTCTAAGAGATATTATTCTCGTACAGAAAAATCGGAGCTGTGGAAGAGATACTTCGGTAGGCCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 422 49 20 7</canonical_bands>
                <polymorphic_bands>509 422 49 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTTGTCTAGAAGTTTTTGGTA</pcr_primer_p1>
		<pcr_primer_p2>AACTTCTCCACTACTCAACAATG</pcr_primer_p2>
		<pcr_amplicon_size>286</pcr_amplicon_size>
		<canonical_amplicon>GCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTT</canonical_amplicon>
		<polymorphic_amplicon>GCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGMGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16893</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>189283</contig_pos>
        <strand>+</strand>
        <context>AGTTCAATGT[A/G]CACGATGGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGT</left_flank>
        <right_flank>CACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGTGCATTTTGCACCACCTTCTCCATGCCATTGCATATTTTCAAGTATTTATTTTTTCGTTTTTTCTCTCATCTGTACTGTGATAATACGATTTATTGTATGGCCCCCAAGAAAGTTTAAAATATGTTAACCATAAGAGATTGTAAACGACTCCTTCCCAAAAAATTTAATAAAGTTGAGTGTTAGATGTGGGATGTTTGTCCGTTGCAACGAATGGTAGCTCCTGTGACGAAGGAACTGAGGTCTTTGGCAGATTGGGCAAAGCTGGAAGAAAACATATGAGACTACCATTTTTTTTGAAAGGAAACTTACAGCTGAGCAATTCCACAATCGGCATCAGTGAACATGTATTTGAGAACACTTGCTCCTTCGAATCCAGTGGTCACTTGTCGATGGGCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAGCCCTTTTATACCAGTTCAAGTGTTGACTGACCATTTCACTTTTTATATGACTCTATTGTTAAGGTTGTTTGATATTAACACATTTACTGTAGTCGTCCTGATCAAATAGTACTACTGTTTGATGACACTAGGAAATTTGTTGGTTGGAAAAATGCAAATCATGTTGTGGTTTCTAAGAGATATTATTCTCGTACAGAAAAATCGGAGCTGTGGAAGAGATACTTCGGTAGGCCGAAGCTCCCACAACGAAAACTACGGTAGTTTATTTTTCGAATTTTTTCGCT</canonical>
            <polymorphic>AATTGTGCATTTTGCACCACCTTCTCCATGCCATTGCATATTTTCAAGTATTTATTTTTTCGTTTTTTCTCTCATCTGTACTGTGATAATACGATTTATTGTATGGCCCCCAAGAAAGTTTAAAATATGTTAACCATAAGAGATTGTAAACGACTCCTTCCCAAAAAATTTAATAAAGTTGAGTGTTAGATGTGGGATGTTTGTCCGTTGCAACGAATGGTAGCTCCTGTGACGAAGGAACTGAGGTCTTTGGCAGATTGGGCAAAGCTGGAAGAAAACATATGAGACTACCATTTTTTTTGAAAGGAAACTTACAGCTGAGCAATTCCACAATCGGCATCAGTGAACATGTATTTGAGAACACTTGCTCCTTCGAATCCAGTGGTCACTTGTCGATGGGCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTRCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAGCCCTTTTATACCAGTTCAAGTGTTGACTGACCATTTCACTTTTTATATGACTCTATTGTTAAGGTTGTTTGATATTAACACATTTACTGTAGTCGTCCTGATCAAATAGTACTACTGTTTGATGACACTAGGAAATTTGTTGGTTGGAAAAATGCAAATCATGTTGTGGTTTCTAAGAGATATTATTCTCGTACAGAAAAATCGGAGCTGTGGAAGAGATACTTCGGTAGGCCGAAGCTCCCACAACGAAAACTACGGTAGTTTATTTTTCGAATTTTTTCGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>498 436 66</canonical_bands>
                <polymorphic_bands>564 436</polymorphic_bands>
            </assay>
            <assay>
                <site>GTGCAC</site>
                <isoschizomers>
                    <enzyme>Alw44I</enzyme>
                    <enzyme>ApaLI</enzyme>
                    <enzyme>VneI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>498 436 66</canonical_bands>
                <polymorphic_bands>564 436</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>290 277 174 130 93 22 7 7</canonical_bands>
                <polymorphic_bands>383 277 174 130 22 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>100 99 72 66 61 47 44 44 42 41 41 37 35 31 30 28 21 20 18 16 15 14 12 12 9 9 8 7 5 5 4 3 2 2</canonical_bands>
                <polymorphic_bands>100 99 72 66 61 47 44 44 42 41 41 37 37 31 30 28 21 20 18 16 15 14 12 12 9 9 8 7 5 5 4 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTAGAAGTTTTTGGTACTCCTC</pcr_primer_p1>
		<pcr_primer_p2>TTCTCCACTACTCAACAATGTCT</pcr_primer_p2>
		<pcr_amplicon_size>278</pcr_amplicon_size>
		<canonical_amplicon>GTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAA</canonical_amplicon>
		<polymorphic_amplicon>GTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTRCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16894</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>189324</contig_pos>
        <strand>+</strand>
        <context>TTTACGATCA[C/T]CGGKRGKTKT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCA</left_flank>
        <right_flank>CGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCAAGTATTTATTTTTTCGTTTTTTCTCTCATCTGTACTGTGATAATACGATTTATTGTATGGCCCCCAAGAAAGTTTAAAATATGTTAACCATAAGAGATTGTAAACGACTCCTTCCCAAAAAATTTAATAAAGTTGAGTGTTAGATGTGGGATGTTTGTCCGTTGCAACGAATGGTAGCTCCTGTGACGAAGGAACTGAGGTCTTTGGCAGATTGGGCAAAGCTGGAAGAAAACATATGAGACTACCATTTTTTTTGAAAGGAAACTTACAGCTGAGCAATTCCACAATCGGCATCAGTGAACATGTATTTGAGAACACTTGCTCCTTCGAATCCAGTGGTCACTTGTCGATGGGCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAGCCCTTTTATACCAGTTCAAGTGTTGACTGACCATTTCACTTTTTATATGACTCTATTGTTAAGGTTGTTTGATATTAACACATTTACTGTAGTCGTCCTGATCAAATAGTACTACTGTTTGATGACACTAGGAAATTTGTTGGTTGGAAAAATGCAAATCATGTTGTGGTTTCTAAGAGATATTATTCTCGTACAGAAAAATCGGAGCTGTGGAAGAGATACTTCGGTAGGCCGAAGCTCCCACAACGAAAACTACGGTAGTTTATTTTTCGAATTTTTTCGCTCGTTTTTCGCCGAGTTTTCCGTTTTTTTTCTCAAAAAAATC</canonical>
            <polymorphic>TTTCAAGTATTTATTTTTTCGTTTTTTCTCTCATCTGTACTGTGATAATACGATTTATTGTATGGCCCCCAAGAAAGTTTAAAATATGTTAACCATAAGAGATTGTAAACGACTCCTTCCCAAAAAATTTAATAAAGTTGAGTGTTAGATGTGGGATGTTTGTCCGTTGCAACGAATGGTAGCTCCTGTGACGAAGGAACTGAGGTCTTTGGCAGATTGGGCAAAGCTGGAAGAAAACATATGAGACTACCATTTTTTTTGAAAGGAAACTTACAGCTGAGCAATTCCACAATCGGCATCAGTGAACATGTATTTGAGAACACTTGCTCCTTCGAATCCAGTGGTCACTTGTCGATGGGCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCAYCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAGCCCTTTTATACCAGTTCAAGTGTTGACTGACCATTTCACTTTTTATATGACTCTATTGTTAAGGTTGTTTGATATTAACACATTTACTGTAGTCGTCCTGATCAAATAGTACTACTGTTTGATGACACTAGGAAATTTGTTGGTTGGAAAAATGCAAATCATGTTGTGGTTTCTAAGAGATATTATTCTCGTACAGAAAAATCGGAGCTGTGGAAGAGATACTTCGGTAGGCCGAAGCTCCCACAACGAAAACTACGGTAGTTTATTTTTCGAATTTTTTCGCTCGTTTTTCGCCGAGTTTTCCGTTTTTTTTCTCAAAAAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>500 384 116</canonical_bands>
                <polymorphic_bands>616 384</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>100 99 82 72 61 47 44 44 44 42 41 37 35 31 30 28 21 20 18 16 15 14 12 12 9 8 5 5 4 2 2</canonical_bands>
                <polymorphic_bands>100 99 82 72 61 47 44 44 44 44 42 41 37 35 31 28 21 20 18 16 15 12 12 9 8 5 5 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGCAGATGTCAAAGTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>CTGAATAAAATCTTCAAAGCATAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAG</canonical_amplicon>
		<polymorphic_amplicon>CAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCAYCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16895</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>189328</contig_pos>
        <strand>+</strand>
        <context>CGATCAYCGG[G/T]RGKTKTGKGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGG</left_flank>
        <right_flank>GGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTATTTATTTTTTCGTTTTTTCTCTCATCTGTACTGTGATAATACGATTTATTGTATGGCCCCCAAGAAAGTTTAAAATATGTTAACCATAAGAGATTGTAAACGACTCCTTCCCAAAAAATTTAATAAAGTTGAGTGTTAGATGTGGGATGTTTGTCCGTTGCAACGAATGGTAGCTCCTGTGACGAAGGAACTGAGGTCTTTGGCAGATTGGGCAAAGCTGGAAGAAAACATATGAGACTACCATTTTTTTTGAAAGGAAACTTACAGCTGAGCAATTCCACAATCGGCATCAGTGAACATGTATTTGAGAACACTTGCTCCTTCGAATCCAGTGGTCACTTGTCGATGGGCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAGCCCTTTTATACCAGTTCAAGTGTTGACTGACCATTTCACTTTTTATATGACTCTATTGTTAAGGTTGTTTGATATTAACACATTTACTGTAGTCGTCCTGATCAAATAGTACTACTGTTTGATGACACTAGGAAATTTGTTGGTTGGAAAAATGCAAATCATGTTGTGGTTTCTAAGAGATATTATTCTCGTACAGAAAAATCGGAGCTGTGGAAGAGATACTTCGGTAGGCCGAAGCTCCCACAACGAAAACTACGGTAGTTTATTTTTCGAATTTTTTCGCTCGTTTTTCGCCGAGTTTTCCGTTTTTTTTCTCAAAAAAATCGGAA</canonical>
            <polymorphic>AAGTATTTATTTTTTCGTTTTTTCTCTCATCTGTACTGTGATAATACGATTTATTGTATGGCCCCCAAGAAAGTTTAAAATATGTTAACCATAAGAGATTGTAAACGACTCCTTCCCAAAAAATTTAATAAAGTTGAGTGTTAGATGTGGGATGTTTGTCCGTTGCAACGAATGGTAGCTCCTGTGACGAAGGAACTGAGGTCTTTGGCAGATTGGGCAAAGCTGGAAGAAAACATATGAGACTACCATTTTTTTTGAAAGGAAACTTACAGCTGAGCAATTCCACAATCGGCATCAGTGAACATGTATTTGAGAACACTTGCTCCTTCGAATCCAGTGGTCACTTGTCGATGGGCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGKGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAGCCCTTTTATACCAGTTCAAGTGTTGACTGACCATTTCACTTTTTATATGACTCTATTGTTAAGGTTGTTTGATATTAACACATTTACTGTAGTCGTCCTGATCAAATAGTACTACTGTTTGATGACACTAGGAAATTTGTTGGTTGGAAAAATGCAAATCATGTTGTGGTTTCTAAGAGATATTATTCTCGTACAGAAAAATCGGAGCTGTGGAAGAGATACTTCGGTAGGCCGAAGCTCCCACAACGAAAACTACGGTAGTTTATTTTTCGAATTTTTTCGCTCGTTTTTCGCCGAGTTTTCCGTTTTTTTTCTCAAAAAAATCGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>504 380 116</canonical_bands>
                <polymorphic_bands>620 380</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGCAGATGTCAAAGTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>CTGAATAAAATCTTCAAAGCATAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAG</canonical_amplicon>
		<polymorphic_amplicon>CAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGKGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16896</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>189329</contig_pos>
        <strand>+</strand>
        <context>GATCAYCGGK[A/G]GKTKTGKGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGG</left_flank>
        <right_flank>GGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTATTTATTTTTTCGTTTTTTCTCTCATCTGTACTGTGATAATACGATTTATTGTATGGCCCCCAAGAAAGTTTAAAATATGTTAACCATAAGAGATTGTAAACGACTCCTTCCCAAAAAATTTAATAAAGTTGAGTGTTAGATGTGGGATGTTTGTCCGTTGCAACGAATGGTAGCTCCTGTGACGAAGGAACTGAGGTCTTTGGCAGATTGGGCAAAGCTGGAAGAAAACATATGAGACTACCATTTTTTTTGAAAGGAAACTTACAGCTGAGCAATTCCACAATCGGCATCAGTGAACATGTATTTGAGAACACTTGCTCCTTCGAATCCAGTGGTCACTTGTCGATGGGCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAGCCCTTTTATACCAGTTCAAGTGTTGACTGACCATTTCACTTTTTATATGACTCTATTGTTAAGGTTGTTTGATATTAACACATTTACTGTAGTCGTCCTGATCAAATAGTACTACTGTTTGATGACACTAGGAAATTTGTTGGTTGGAAAAATGCAAATCATGTTGTGGTTTCTAAGAGATATTATTCTCGTACAGAAAAATCGGAGCTGTGGAAGAGATACTTCGGTAGGCCGAAGCTCCCACAACGAAAACTACGGTAGTTTATTTTTCGAATTTTTTCGCTCGTTTTTCGCCGAGTTTTCCGTTTTTTTTCTCAAAAAAATCGGAAA</canonical>
            <polymorphic>AGTATTTATTTTTTCGTTTTTTCTCTCATCTGTACTGTGATAATACGATTTATTGTATGGCCCCCAAGAAAGTTTAAAATATGTTAACCATAAGAGATTGTAAACGACTCCTTCCCAAAAAATTTAATAAAGTTGAGTGTTAGATGTGGGATGTTTGTCCGTTGCAACGAATGGTAGCTCCTGTGACGAAGGAACTGAGGTCTTTGGCAGATTGGGCAAAGCTGGAAGAAAACATATGAGACTACCATTTTTTTTGAAAGGAAACTTACAGCTGAGCAATTCCACAATCGGCATCAGTGAACATGTATTTGAGAACACTTGCTCCTTCGAATCCAGTGGTCACTTGTCGATGGGCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGRGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAGCCCTTTTATACCAGTTCAAGTGTTGACTGACCATTTCACTTTTTATATGACTCTATTGTTAAGGTTGTTTGATATTAACACATTTACTGTAGTCGTCCTGATCAAATAGTACTACTGTTTGATGACACTAGGAAATTTGTTGGTTGGAAAAATGCAAATCATGTTGTGGTTTCTAAGAGATATTATTCTCGTACAGAAAAATCGGAGCTGTGGAAGAGATACTTCGGTAGGCCGAAGCTCCCACAACGAAAACTACGGTAGTTTATTTTTCGAATTTTTTCGCTCGTTTTTCGCCGAGTTTTCCGTTTTTTTTCTCAAAAAAATCGGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>505 379 116</canonical_bands>
                <polymorphic_bands>621 379</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGCAGATGTCAAAGTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>CTGAATAAAATCTTCAAAGCATAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAG</canonical_amplicon>
		<polymorphic_amplicon>CAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGRGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16897</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>189331</contig_pos>
        <strand>+</strand>
        <context>TCAYCGGKRG[G/T]TKTGKGTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGG</left_flank>
        <right_flank>TTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTATTTTTTCGTTTTTTCTCTCATCTGTACTGTGATAATACGATTTATTGTATGGCCCCCAAGAAAGTTTAAAATATGTTAACCATAAGAGATTGTAAACGACTCCTTCCCAAAAAATTTAATAAAGTTGAGTGTTAGATGTGGGATGTTTGTCCGTTGCAACGAATGGTAGCTCCTGTGACGAAGGAACTGAGGTCTTTGGCAGATTGGGCAAAGCTGGAAGAAAACATATGAGACTACCATTTTTTTTGAAAGGAAACTTACAGCTGAGCAATTCCACAATCGGCATCAGTGAACATGTATTTGAGAACACTTGCTCCTTCGAATCCAGTGGTCACTTGTCGATGGGCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAGCCCTTTTATACCAGTTCAAGTGTTGACTGACCATTTCACTTTTTATATGACTCTATTGTTAAGGTTGTTTGATATTAACACATTTACTGTAGTCGTCCTGATCAAATAGTACTACTGTTTGATGACACTAGGAAATTTGTTGGTTGGAAAAATGCAAATCATGTTGTGGTTTCTAAGAGATATTATTCTCGTACAGAAAAATCGGAGCTGTGGAAGAGATACTTCGGTAGGCCGAAGCTCCCACAACGAAAACTACGGTAGTTTATTTTTCGAATTTTTTCGCTCGTTTTTCGCCGAGTTTTCCGTTTTTTTTCTCAAAAAAATCGGAAAAT</canonical>
            <polymorphic>TATTTATTTTTTCGTTTTTTCTCTCATCTGTACTGTGATAATACGATTTATTGTATGGCCCCCAAGAAAGTTTAAAATATGTTAACCATAAGAGATTGTAAACGACTCCTTCCCAAAAAATTTAATAAAGTTGAGTGTTAGATGTGGGATGTTTGTCCGTTGCAACGAATGGTAGCTCCTGTGACGAAGGAACTGAGGTCTTTGGCAGATTGGGCAAAGCTGGAAGAAAACATATGAGACTACCATTTTTTTTGAAAGGAAACTTACAGCTGAGCAATTCCACAATCGGCATCAGTGAACATGTATTTGAGAACACTTGCTCCTTCGAATCCAGTGGTCACTTGTCGATGGGCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGKTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAGCCCTTTTATACCAGTTCAAGTGTTGACTGACCATTTCACTTTTTATATGACTCTATTGTTAAGGTTGTTTGATATTAACACATTTACTGTAGTCGTCCTGATCAAATAGTACTACTGTTTGATGACACTAGGAAATTTGTTGGTTGGAAAAATGCAAATCATGTTGTGGTTTCTAAGAGATATTATTCTCGTACAGAAAAATCGGAGCTGTGGAAGAGATACTTCGGTAGGCCGAAGCTCCCACAACGAAAACTACGGTAGTTTATTTTTCGAATTTTTTCGCTCGTTTTTCGCCGAGTTTTCCGTTTTTTTTCTCAAAAAAATCGGAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCAGATGTCAAAGTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>CTGAATAAAATCTTCAAAGCATAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAG</canonical_amplicon>
		<polymorphic_amplicon>CAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGKTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16898</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>189333</contig_pos>
        <strand>+</strand>
        <context>AYCGGKRGKT[G/T]TGKGTGAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGT</left_flank>
        <right_flank>TGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATTTTTTCGTTTTTTCTCTCATCTGTACTGTGATAATACGATTTATTGTATGGCCCCCAAGAAAGTTTAAAATATGTTAACCATAAGAGATTGTAAACGACTCCTTCCCAAAAAATTTAATAAAGTTGAGTGTTAGATGTGGGATGTTTGTCCGTTGCAACGAATGGTAGCTCCTGTGACGAAGGAACTGAGGTCTTTGGCAGATTGGGCAAAGCTGGAAGAAAACATATGAGACTACCATTTTTTTTGAAAGGAAACTTACAGCTGAGCAATTCCACAATCGGCATCAGTGAACATGTATTTGAGAACACTTGCTCCTTCGAATCCAGTGGTCACTTGTCGATGGGCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAGCCCTTTTATACCAGTTCAAGTGTTGACTGACCATTTCACTTTTTATATGACTCTATTGTTAAGGTTGTTTGATATTAACACATTTACTGTAGTCGTCCTGATCAAATAGTACTACTGTTTGATGACACTAGGAAATTTGTTGGTTGGAAAAATGCAAATCATGTTGTGGTTTCTAAGAGATATTATTCTCGTACAGAAAAATCGGAGCTGTGGAAGAGATACTTCGGTAGGCCGAAGCTCCCACAACGAAAACTACGGTAGTTTATTTTTCGAATTTTTTCGCTCGTTTTTCGCCGAGTTTTCCGTTTTTTTTCTCAAAAAAATCGGAAAATAA</canonical>
            <polymorphic>TTTATTTTTTCGTTTTTTCTCTCATCTGTACTGTGATAATACGATTTATTGTATGGCCCCCAAGAAAGTTTAAAATATGTTAACCATAAGAGATTGTAAACGACTCCTTCCCAAAAAATTTAATAAAGTTGAGTGTTAGATGTGGGATGTTTGTCCGTTGCAACGAATGGTAGCTCCTGTGACGAAGGAACTGAGGTCTTTGGCAGATTGGGCAAAGCTGGAAGAAAACATATGAGACTACCATTTTTTTTGAAAGGAAACTTACAGCTGAGCAATTCCACAATCGGCATCAGTGAACATGTATTTGAGAACACTTGCTCCTTCGAATCCAGTGGTCACTTGTCGATGGGCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTKTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAGCCCTTTTATACCAGTTCAAGTGTTGACTGACCATTTCACTTTTTATATGACTCTATTGTTAAGGTTGTTTGATATTAACACATTTACTGTAGTCGTCCTGATCAAATAGTACTACTGTTTGATGACACTAGGAAATTTGTTGGTTGGAAAAATGCAAATCATGTTGTGGTTTCTAAGAGATATTATTCTCGTACAGAAAAATCGGAGCTGTGGAAGAGATACTTCGGTAGGCCGAAGCTCCCACAACGAAAACTACGGTAGTTTATTTTTCGAATTTTTTCGCTCGTTTTTCGCCGAGTTTTCCGTTTTTTTTCTCAAAAAAATCGGAAAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCAGATGTCAAAGTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>CTGAATAAAATCTTCAAAGCATAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAG</canonical_amplicon>
		<polymorphic_amplicon>CAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTKTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16899</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>189336</contig_pos>
        <strand>+</strand>
        <context>GGKRGKTKTG[G/T]GTGAAGAAKT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTG</left_flank>
        <right_flank>GTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTTCGTTTTTTCTCTCATCTGTACTGTGATAATACGATTTATTGTATGGCCCCCAAGAAAGTTTAAAATATGTTAACCATAAGAGATTGTAAACGACTCCTTCCCAAAAAATTTAATAAAGTTGAGTGTTAGATGTGGGATGTTTGTCCGTTGCAACGAATGGTAGCTCCTGTGACGAAGGAACTGAGGTCTTTGGCAGATTGGGCAAAGCTGGAAGAAAACATATGAGACTACCATTTTTTTTGAAAGGAAACTTACAGCTGAGCAATTCCACAATCGGCATCAGTGAACATGTATTTGAGAACACTTGCTCCTTCGAATCCAGTGGTCACTTGTCGATGGGCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAGCCCTTTTATACCAGTTCAAGTGTTGACTGACCATTTCACTTTTTATATGACTCTATTGTTAAGGTTGTTTGATATTAACACATTTACTGTAGTCGTCCTGATCAAATAGTACTACTGTTTGATGACACTAGGAAATTTGTTGGTTGGAAAAATGCAAATCATGTTGTGGTTTCTAAGAGATATTATTCTCGTACAGAAAAATCGGAGCTGTGGAAGAGATACTTCGGTAGGCCGAAGCTCCCACAACGAAAACTACGGTAGTTTATTTTTCGAATTTTTTCGCTCGTTTTTCGCCGAGTTTTCCGTTTTTTTTCTCAAAAAAATCGGAAAATAAAAA</canonical>
            <polymorphic>ATTTTTTCGTTTTTTCTCTCATCTGTACTGTGATAATACGATTTATTGTATGGCCCCCAAGAAAGTTTAAAATATGTTAACCATAAGAGATTGTAAACGACTCCTTCCCAAAAAATTTAATAAAGTTGAGTGTTAGATGTGGGATGTTTGTCCGTTGCAACGAATGGTAGCTCCTGTGACGAAGGAACTGAGGTCTTTGGCAGATTGGGCAAAGCTGGAAGAAAACATATGAGACTACCATTTTTTTTGAAAGGAAACTTACAGCTGAGCAATTCCACAATCGGCATCAGTGAACATGTATTTGAGAACACTTGCTCCTTCGAATCCAGTGGTCACTTGTCGATGGGCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGKGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAGCCCTTTTATACCAGTTCAAGTGTTGACTGACCATTTCACTTTTTATATGACTCTATTGTTAAGGTTGTTTGATATTAACACATTTACTGTAGTCGTCCTGATCAAATAGTACTACTGTTTGATGACACTAGGAAATTTGTTGGTTGGAAAAATGCAAATCATGTTGTGGTTTCTAAGAGATATTATTCTCGTACAGAAAAATCGGAGCTGTGGAAGAGATACTTCGGTAGGCCGAAGCTCCCACAACGAAAACTACGGTAGTTTATTTTTCGAATTTTTTCGCTCGTTTTTCGCCGAGTTTTCCGTTTTTTTTCTCAAAAAAATCGGAAAATAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>100 99 94 72 61 47 44 44 42 41 37 35 32 31 30 28 21 20 18 16 15 14 12 12 9 8 5 5 4 2 2</canonical_bands>
                <polymorphic_bands>100 99 94 72 61 47 44 44 42 41 37 35 32 31 30 28 21 20 18 16 16 15 12 12 9 8 5 5 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGCAGATGTCAAAGTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>CTGAATAAAATCTTCAAAGCATAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAG</canonical_amplicon>
		<polymorphic_amplicon>CAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGKGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16900</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>189345</contig_pos>
        <strand>+</strand>
        <context>GKGTGAAGAA[G/T]TATYCACAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAA</left_flank>
        <right_flank>TATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTCTCTCATCTGTACTGTGATAATACGATTTATTGTATGGCCCCCAAGAAAGTTTAAAATATGTTAACCATAAGAGATTGTAAACGACTCCTTCCCAAAAAATTTAATAAAGTTGAGTGTTAGATGTGGGATGTTTGTCCGTTGCAACGAATGGTAGCTCCTGTGACGAAGGAACTGAGGTCTTTGGCAGATTGGGCAAAGCTGGAAGAAAACATATGAGACTACCATTTTTTTTGAAAGGAAACTTACAGCTGAGCAATTCCACAATCGGCATCAGTGAACATGTATTTGAGAACACTTGCTCCTTCGAATCCAGTGGTCACTTGTCGATGGGCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAGCCCTTTTATACCAGTTCAAGTGTTGACTGACCATTTCACTTTTTATATGACTCTATTGTTAAGGTTGTTTGATATTAACACATTTACTGTAGTCGTCCTGATCAAATAGTACTACTGTTTGATGACACTAGGAAATTTGTTGGTTGGAAAAATGCAAATCATGTTGTGGTTTCTAAGAGATATTATTCTCGTACAGAAAAATCGGAGCTGTGGAAGAGATACTTCGGTAGGCCGAAGCTCCCACAACGAAAACTACGGTAGTTTATTTTTCGAATTTTTTCGCTCGTTTTTCGCCGAGTTTTCCGTTTTTTTTCTCAAAAAAATCGGAAAATAAAAATTTTCGACA</canonical>
            <polymorphic>TTTTTTCTCTCATCTGTACTGTGATAATACGATTTATTGTATGGCCCCCAAGAAAGTTTAAAATATGTTAACCATAAGAGATTGTAAACGACTCCTTCCCAAAAAATTTAATAAAGTTGAGTGTTAGATGTGGGATGTTTGTCCGTTGCAACGAATGGTAGCTCCTGTGACGAAGGAACTGAGGTCTTTGGCAGATTGGGCAAAGCTGGAAGAAAACATATGAGACTACCATTTTTTTTGAAAGGAAACTTACAGCTGAGCAATTCCACAATCGGCATCAGTGAACATGTATTTGAGAACACTTGCTCCTTCGAATCCAGTGGTCACTTGTCGATGGGCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAKTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAGCCCTTTTATACCAGTTCAAGTGTTGACTGACCATTTCACTTTTTATATGACTCTATTGTTAAGGTTGTTTGATATTAACACATTTACTGTAGTCGTCCTGATCAAATAGTACTACTGTTTGATGACACTAGGAAATTTGTTGGTTGGAAAAATGCAAATCATGTTGTGGTTTCTAAGAGATATTATTCTCGTACAGAAAAATCGGAGCTGTGGAAGAGATACTTCGGTAGGCCGAAGCTCCCACAACGAAAACTACGGTAGTTTATTTTTCGAATTTTTTCGCTCGTTTTTCGCCGAGTTTTCCGTTTTTTTTCTCAAAAAAATCGGAAAATAAAAATTTTCGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCAGATGTCAAAGTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>CTGAATAAAATCTTCAAAGCATAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAG</canonical_amplicon>
		<polymorphic_amplicon>CAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAKTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16901</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>189349</contig_pos>
        <strand>+</strand>
        <context>GAAGAAKTAT[C/T]CACAGTAGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTAT</left_flank>
        <right_flank>CACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTCTCATCTGTACTGTGATAATACGATTTATTGTATGGCCCCCAAGAAAGTTTAAAATATGTTAACCATAAGAGATTGTAAACGACTCCTTCCCAAAAAATTTAATAAAGTTGAGTGTTAGATGTGGGATGTTTGTCCGTTGCAACGAATGGTAGCTCCTGTGACGAAGGAACTGAGGTCTTTGGCAGATTGGGCAAAGCTGGAAGAAAACATATGAGACTACCATTTTTTTTGAAAGGAAACTTACAGCTGAGCAATTCCACAATCGGCATCAGTGAACATGTATTTGAGAACACTTGCTCCTTCGAATCCAGTGGTCACTTGTCGATGGGCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAGCCCTTTTATACCAGTTCAAGTGTTGACTGACCATTTCACTTTTTATATGACTCTATTGTTAAGGTTGTTTGATATTAACACATTTACTGTAGTCGTCCTGATCAAATAGTACTACTGTTTGATGACACTAGGAAATTTGTTGGTTGGAAAAATGCAAATCATGTTGTGGTTTCTAAGAGATATTATTCTCGTACAGAAAAATCGGAGCTGTGGAAGAGATACTTCGGTAGGCCGAAGCTCCCACAACGAAAACTACGGTAGTTTATTTTTCGAATTTTTTCGCTCGTTTTTCGCCGAGTTTTCCGTTTTTTTTCTCAAAAAAATCGGAAAATAAAAATTTTCGACAATGA</canonical>
            <polymorphic>TTCTCTCATCTGTACTGTGATAATACGATTTATTGTATGGCCCCCAAGAAAGTTTAAAATATGTTAACCATAAGAGATTGTAAACGACTCCTTCCCAAAAAATTTAATAAAGTTGAGTGTTAGATGTGGGATGTTTGTCCGTTGCAACGAATGGTAGCTCCTGTGACGAAGGAACTGAGGTCTTTGGCAGATTGGGCAAAGCTGGAAGAAAACATATGAGACTACCATTTTTTTTGAAAGGAAACTTACAGCTGAGCAATTCCACAATCGGCATCAGTGAACATGTATTTGAGAACACTTGCTCCTTCGAATCCAGTGGTCACTTGTCGATGGGCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATYCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAGCCCTTTTATACCAGTTCAAGTGTTGACTGACCATTTCACTTTTTATATGACTCTATTGTTAAGGTTGTTTGATATTAACACATTTACTGTAGTCGTCCTGATCAAATAGTACTACTGTTTGATGACACTAGGAAATTTGTTGGTTGGAAAAATGCAAATCATGTTGTGGTTTCTAAGAGATATTATTCTCGTACAGAAAAATCGGAGCTGTGGAAGAGATACTTCGGTAGGCCGAAGCTCCCACAACGAAAACTACGGTAGTTTATTTTTCGAATTTTTTCGCTCGTTTTTCGCCGAGTTTTCCGTTTTTTTTCTCAAAAAAATCGGAAAATAAAAATTTTCGACAATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCAGATGTCAAAGTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>CTGAATAAAATCTTCAAAGCATAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAG</canonical_amplicon>
		<polymorphic_amplicon>CAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATYCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16902</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>192606</contig_pos>
        <strand>+</strand>
        <context>TTCAATCAGT[A/T]TACTACATAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATTTTGATCCTTTCTTCCGAATTTTCGAAATTCTAGTATTTCAATCAGT</left_flank>
        <right_flank>TACTACATACTTGTAAAATTCCGCCGCCAAAGCCCGGGCCTGGGGAAATT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCTGCGTTTTTCGATGTTTGTCAACACATACTCCGACCCGTCCGTTCGTTTCCTATCCTTCAAGTTGAAAAATTACTTTTGAAAACGTTCACCTTAAATTATGACTCTGAAAAAAGTAAGGAACAAACAATAAGAGCATCCAAATAAAAACAGTGATGCCTAGAAAAAGAGCAACATATAAGAAGTAGAAAAAGGGGGAAGCATCTAAAGTGTCTCCCAAGAATATCCATTTTCAGAAAGAGACGGGGGACCATCTTCTTATTCTTCTCGATTTTCATTCCAGTGGTGAAATGACGGAAGAGAGAACAAAAAGAAGAATGTTTGCTCTTATTTACGTTATTATTTTTTTTGTTTAGTTATTTTTTCTGGCTCTTCTTTTGCCCTTCTTGCACTCATAAAGTTGAGGAACGAGAAAGTGAAATTCGAGTGAATTCGTCCGCAGCTAGGATTTTGATCCTTTCTTCCGAATTTTCGAAATTCTAGTATTTCAATCAGTTTACTACATACTTGTAAAATTCCGCCGCCAAAGCCCGGGCCTGGGGAAATTTTCAAGGCCCGAGCCCGGCCCGGAAGGCCCGGTATCAAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTCTCCATTTTTTTGTTTTTTGGATTGTTTGTCTGTTTGATCTAAAAAATTAGAAAAAACTCGAACAAAAATTTTTGATCGAAAAAAATCAAATAAGGGTCCCCTGTTATGTGTTTTTTGAAAATTTAAAAACTTGTGAAATGACGGGCCCGCCGGGCCTTCGAAATTCGGAAAAAAACCCGGCCCGGCCCGTTACAAGTATATTATACTAGAACTTCGGAATTTCGAAAAAAAAGTATAATTAAATATACAGAGAATATATATAAAACTTGAAAGAGAAGAGTCCACTGACCCCAAACTTTGACCCAATCAGCTAGATTCCTGTCAAAGATATAAGAAAATTGTCAACGAATTAATTGTTTATCATA</canonical>
            <polymorphic>TTTTCTGCGTTTTTCGATGTTTGTCAACACATACTCCGACCCGTCCGTTCGTTTCCTATCCTTCAAGTTGAAAAATTACTTTTGAAAACGTTCACCTTAAATTATGACTCTGAAAAAAGTAAGGAACAAACAATAAGAGCATCCAAATAAAAACAGTGATGCCTAGAAAAAGAGCAACATATAAGAAGTAGAAAAAGGGGGAAGCATCTAAAGTGTCTCCCAAGAATATCCATTTTCAGAAAGAGACGGGGGACCATCTTCTTATTCTTCTCGATTTTCATTCCAGTGGTGAAATGACGGAAGAGAGAACAAAAAGAAGAATGTTTGCTCTTATTTACGTTATTATTTTTTTTGTTTAGTTATTTTTTCTGGCTCTTCTTTTGCCCTTCTTGCACTCATAAAGTTGAGGAACGAGAAAGTGAAATTCGAGTGAATTCGTCCGCAGCTAGGATTTTGATCCTTTCTTCCGAATTTTCGAAATTCTAGTATTTCAATCAGTWTACTACATACTTGTAAAATTCCGCCGCCAAAGCCCGGGCCTGGGGAAATTTTCAAGGCCCGAGCCCGGCCCGGAAGGCCCGGTATCAAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTCTCCATTTTTTTGTTTTTTGGATTGTTTGTCTGTTTGATCTAAAAAATTAGAAAAAACTCGAACAAAAATTTTTGATCGAAAAAAATCAAATAAGGGTCCCCTGTTATGTGTTTTTTGAAAATTTAAAAACTTGTGAAATGACGGGCCCGCCGGGCCTTCGAAATTCGGAAAAAAACCCGGCCCGGCCCGTTACAAGTATATTATACTAGAACTTCGGAATTTCGAAAAAAAAGTATAATTAAATATACAGAGAATATATATAAAACTTGAAAGAGAAGAGTCCACTGACCCCAAACTTTGACCCAATCAGCTAGATTCCTGTCAAAGATATAAGAAAATTGTCAACGAATTAATTGTTTATCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAGGATTTTGATCCTTTCTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTAGATCAAACAGACAAACA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>GCTAGGATTTTGATCCTTTCTTCCGAATTTTCGAAATTCTAGTATTTCAATCAGTTTACTACATACTTGTAAAATTCCGCCGCCAAAGCCCGGGCCTGGGGAAATTTTCAAGGCCCGAGCCCGGCCCGGAAGGCCCGGTATCAAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTCTCCATTTTTTTGTTTTTTGGATTGTTTGTCTGTTTGATCTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GCTAGGATTTTGATCCTTTCTTCCGAATTTTCGAAATTCTAGTATTTCAATCAGTWTACTACATACTTGTAAAATTCCGCCGCCAAAGCCCGGGCCTGGGGAAATTTTCAAGGCCCGAGCCCGGCCCGGAAGGCCCGGTATCAAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTCTCCATTTTTTTGTTTTTTGGATTGTTTGTCTGTTTGATCTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16903</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>192510</contig_pos>
        <strand>+</strand>
        <context>ACTCATAAAG[C/T]TGAGGAACGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTAGTTATTTTTTCTGGCTCTTCTTTTGCCCTTCTTGCACTCATAAAG</left_flank>
        <right_flank>TGAGGAACGAGAAAGTGAAATTCGAGTGAATTCGTCCGCAGCTAGGATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAGAAATTTACTTCGAGTTGAACGATTACTAATTCATAAGATTTCTTCGTCGTCCCGTATGTTGCACGAGCGTAAAAAAGTTCTGCGTAGCCAGTTTTCTGCGTTTTTCGATGTTTGTCAACACATACTCCGACCCGTCCGTTCGTTTCCTATCCTTCAAGTTGAAAAATTACTTTTGAAAACGTTCACCTTAAATTATGACTCTGAAAAAAGTAAGGAACAAACAATAAGAGCATCCAAATAAAAACAGTGATGCCTAGAAAAAGAGCAACATATAAGAAGTAGAAAAAGGGGGAAGCATCTAAAGTGTCTCCCAAGAATATCCATTTTCAGAAAGAGACGGGGGACCATCTTCTTATTCTTCTCGATTTTCATTCCAGTGGTGAAATGACGGAAGAGAGAACAAAAAGAAGAATGTTTGCTCTTATTTACGTTATTATTTTTTTTGTTTAGTTATTTTTTCTGGCTCTTCTTTTGCCCTTCTTGCACTCATAAAGTTGAGGAACGAGAAAGTGAAATTCGAGTGAATTCGTCCGCAGCTAGGATTTTGATCCTTTCTTCCGAATTTTCGAAATTCTAGTATTTCAATCAGTTTACTACATACTTGTAAAATTCCGCCGCCAAAGCCCGGGCCTGGGGAAATTTTCAAGGCCCGAGCCCGGCCCGGAAGGCCCGGTATCAAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTCTCCATTTTTTTGTTTTTTGGATTGTTTGTCTGTTTGATCTAAAAAATTAGAAAAAACTCGAACAAAAATTTTTGATCGAAAAAAATCAAATAAGGGTCCCCTGTTATGTGTTTTTTGAAAATTTAAAAACTTGTGAAATGACGGGCCCGCCGGGCCTTCGAAATTCGGAAAAAAACCCGGCCCGGCCCGTTACAAGTATATTATACTAGAACTTCGGAATTTCGAAAAAAAAGTATAATTAAATATACAGAGAATATATATAAAACTTG</canonical>
            <polymorphic>TTTAGAAATTTACTTCGAGTTGAACGATTACTAATTCATAAGATTTCTTCGTCGTCCCGTATGTTGCACGAGCGTAAAAAAGTTCTGCGTAGCCAGTTTTCTGCGTTTTTCGATGTTTGTCAACACATACTCCGACCCGTCCGTTCGTTTCCTATCCTTCAAGTTGAAAAATTACTTTTGAAAACGTTCACCTTAAATTATGACTCTGAAAAAAGTAAGGAACAAACAATAAGAGCATCCAAATAAAAACAGTGATGCCTAGAAAAAGAGCAACATATAAGAAGTAGAAAAAGGGGGAAGCATCTAAAGTGTCTCCCAAGAATATCCATTTTCAGAAAGAGACGGGGGACCATCTTCTTATTCTTCTCGATTTTCATTCCAGTGGTGAAATGACGGAAGAGAGAACAAAAAGAAGAATGTTTGCTCTTATTTACGTTATTATTTTTTTTGTTTAGTTATTTTTTCTGGCTCTTCTTTTGCCCTTCTTGCACTCATAAAGYTGAGGAACGAGAAAGTGAAATTCGAGTGAATTCGTCCGCAGCTAGGATTTTGATCCTTTCTTCCGAATTTTCGAAATTCTAGTATTTCAATCAGTTTACTACATACTTGTAAAATTCCGCCGCCAAAGCCCGGGCCTGGGGAAATTTTCAAGGCCCGAGCCCGGCCCGGAAGGCCCGGTATCAAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTCTCCATTTTTTTGTTTTTTGGATTGTTTGTCTGTTTGATCTAAAAAATTAGAAAAAACTCGAACAAAAATTTTTGATCGAAAAAAATCAAATAAGGGTCCCCTGTTATGTGTTTTTTGAAAATTTAAAAACTTGTGAAATGACGGGCCCGCCGGGCCTTCGAAATTCGGAAAAAAACCCGGCCCGGCCCGTTACAAGTATATTATACTAGAACTTCGGAATTTCGAAAAAAAAGTATAATTAAATATACAGAGAATATATATAAAACTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCATTCCAGTGGTGAA</pcr_primer_p1>
		<pcr_primer_p2>GCGGAATTTTACAAGTATGTAGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCATTCCAGTGGTGAAATGACGGAAGAGAGAACAAAAAGAAGAATGTTTGCTCTTATTTACGTTATTATTTTTTTTGTTTAGTTATTTTTTCTGGCTCTTCTTTTGCCCTTCTTGCACTCATAAAGTTGAGGAACGAGAAAGTGAAATTCGAGTGAATTCGTCCGCAGCTAGGATTTTGATCCTTTCTTCCGAATTTTCGAAATTCTAGTATTTCAATCAGTTTACTACATACTTGTAAAATTCCGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCATTCCAGTGGTGAAATGACGGAAGAGAGAACAAAAAGAAGAATGTTTGCTCTTATTTACGTTATTATTTTTTTTGTTTAGTTATTTTTTCTGGCTCTTCTTTTGCCCTTCTTGCACTCATAAAGYTGAGGAACGAGAAAGTGAAATTCGAGTGAATTCGTCCGCAGCTAGGATTTTGATCCTTTCTTCCGAATTTTCGAAATTCTAGTATTTCAATCAGTTTACTACATACTTGTAAAATTCCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16929</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>349052</contig_pos>
        <strand>+</strand>
        <context>TAAGTATGTT[C/T]CTTCGAAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCGGATTCTAGAGATATCGAGTCGAACTCTTGCCTCATTTAAGTATGTT</left_flank>
        <right_flank>CTTCGAAATTGTAGGGGACATGCTTTTGAGAGGTACAACATGATATCGAA</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCCATGATTGGTTCCGCAGTGAATTCTTCACCTGAGAAAACGAAAATTCAGTTGGAATTAAAAACAAAGAATGAACTAAGATTAATGAGACGATTACTGATCATGAAGTACAAGAACCACCCGTGGCAACGTTTTGAGAGTAAATTTATCAAATAAGGTTATCCAGCTATATAATAGAGAACATCATAGATAAAAACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCAATCTATTTTTTTCAAATGTTCGTCGCTTCGTTTTTCACTTTTTCTAAATAAAAGGGTCACGTAAATATATATATATATATATATGTTTTTTTTCAATTTTTTCAAAAGTCCACAGACGGACACGAGGACGAACAGACGCCTCTAGCGTTTTATTAATAAGGAAGATCGTTTTTTTTGCTTTGAATAAATGGGCAAGCGAAGAAAGTCTTACAGTATTTTTTCGGATTCTAGAGATATCGAGTCGAACTCTTGCCTCATTTAAGTATGTTCCTTCGAAATTGTAGGGGACATGCTTTTGAGAGGTACAACATGATATCGAATTGGTGCGATACAGAGAATTATGACGAATTTTAAATTTAAAATCAGTTAACTATTTTTGAAACTAGATAAAAACAGAGGATTTCACTATTCTATGACAGAAACCAGAGTGGAGAATAATATAACGGTTTTTGGACAACTGAAATATCGAGACGTCAGCGATTTCGAGGCGGATTTAAGTAAAAGTTGAAACGCCGCACCGATTTTCTCGGAATCGGCTCTTCGGAGACAACGCCTTCCTCGGAATCGGTGGAGTCTCAAAATATCTAGAGTTTTTTTTTGAAAGTTGCGACTTCCCGGAAAAAATGTCAACTTTTAAATTCAAATTCGACACTTCGCGCCATGCGCAACAGAGCGCACTTGAAGGAGTAAAATAATTTGCGGAGACCCCGCAAATTCCGGAGAAAAAAATTTCCGGGAAAAAAAAACTCCGGAGAAAAGTGGGCGGAGTC</canonical>
            <polymorphic>GTTCCATGATTGGTTCCGCAGTGAATTCTTCACCTGAGAAAACGAAAATTCAGTTGGAATTAAAAACAAAGAATGAACTAAGATTAATGAGACGATTACTGATCATGAAGTACAAGAACCACCCGTGGCAACGTTTTGAGAGTAAATTTATCAAATAAGGTTATCCAGCTATATAATAGAGAACATCATAGATAAAAACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCAATCTATTTTTTTCAAATGTTCGTCGCTTCGTTTTTCACTTTTTCTAAATAAAAGGGTCACGTAAATATATATATATATATATATGTTTTTTTTCAATTTTTTCAAAAGTCCACAGACGGACACGAGGACGAACAGACGCCTCTAGCGTTTTATTAATAAGGAAGATCGTTTTTTTTGCTTTGAATAAATGGGCAAGCGAAGAAAGTCTTACAGTATTTTTTCGGATTCTAGAGATATCGAGTCGAACTCTTGCCTCATTTAAGTATGTTYCTTCGAAATTGTAGGGGACATGCTTTTGAGAGGTACAACATGATATCGAATTGGTGCGATACAGAGAATTATGACGAATTTTAAATTTAAAATCAGTTAACTATTTTTGAAACTAGATAAAAACAGAGGATTTCACTATTCTATGACAGAAACCAGAGTGGAGAATAATATAACGGTTTTTGGACAACTGAAATATCGAGACGTCAGCGATTTCGAGGCGGATTTAAGTAAAAGTTGAAACGCCGCACCGATTTTCTCGGAATCGGCTCTTCGGAGACAACGCCTTCCTCGGAATCGGTGGAGTCTCAAAATATCTAGAGTTTTTTTTTGAAAGTTGCGACTTCCCGGAAAAAATGTCAACTTTTAAATTCAAATTCGACACTTCGCGCCATGCGCAACAGAGCGCACTTGAAGGAGTAAAATAATTTGCGGAGACCCCGCAAATTCCGGAGAAAAAAATTTCCGGGAAAAAAAAACTCCGGAGAAAAGTGGGCGGAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCGAAGAAAGTCTTACAGTATT</pcr_primer_p1>
		<pcr_primer_p2>CCGTTATATTATTCTCCACTCTG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAGCGAAGAAAGTCTTACAGTATTTTTTCGGATTCTAGAGATATCGAGTCGAACTCTTGCCTCATTTAAGTATGTTCCTTCGAAATTGTAGGGGACATGCTTTTGAGAGGTACAACATGATATCGAATTGGTGCGATACAGAGAATTATGACGAATTTTAAATTTAAAATCAGTTAACTATTTTTGAAACTAGATAAAAACAGAGGATTTCACTATTCTATGACAGAAACCAGAGTGGAGAATAATATAACGG</canonical_amplicon>
		<polymorphic_amplicon>AAGCGAAGAAAGTCTTACAGTATTTTTTCGGATTCTAGAGATATCGAGTCGAACTCTTGCCTCATTTAAGTATGTTYCTTCGAAATTGTAGGGGACATGCTTTTGAGAGGTACAACATGATATCGAATTGGTGCGATACAGAGAATTATGACGAATTTTAAATTTAAAATCAGTTAACTATTTTTGAAACTAGATAAAAACAGAGGATTTCACTATTCTATGACAGAAACCAGAGTGGAGAATAATATAACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16930</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>374545</contig_pos>
        <strand></strand>
        <context>GCWTTTTTTT[T/A]AAATTAAATG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GGAAATATACATAGAAACATTTATATCTATCTCAATTTCAGCTTTTTTTT</left_flank>
        <right_flank>AAATTAAATGAAACGTTTTAAAATCCGCACGTAATCATAAAACGATGTTT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACAATTTCAGAATAAAATAAATAAAGTTGGATTAAAACTGCAGTGAAATCTTCAACAACCAAAACAGACAGTATTGCTAACATATACCAGATTCGTCGGTTAAGAATCAAAAAAGAGTTACAAGGTGGCCGAGTAGTGCAACCCCGCCGGCCACGGCCTCTGCCTTTGGATAGTTAGCAAAACTGGTTCTTTGTGTGTACAGCAGTACAATCAACTCTATTGATGTTCATTTACCAGCATTTACCGGCATTCTCTGGTTGTACTGAGTTTGTATCGATAGAAATTATATTTTTATATACGATTGGTGCATACCTTGTAATTTAAATATTTTAGTTGAATATTTTAAACTATAGAATATTAATGTATTAGATAAAAGTTTTAGAAAAGTACATTGATGGTTATTTTTATTCCAGAAATCTGCAATGCCGCTTGTATTTCTCAGATACCGGAAATATACATAGAAACATTTATATCTATCTCAATTTCAGCTTTTTTTTTAAATTAAATGAAACGTTTTAAAATCCGCACGTAATCATAAAACGATGTTTTTACGGTACTTACTGTTTGTTTTTTCGAATTTCCCTTCTCTTGTTTTGCAATTTTAAAATTTTTAATACCGTAACATTGAAGGCGCATTCTAAAGTTTTGTTCGAGGGTCTCGCAGTCGTCACTCGTGACGATTTACGAGCTTCTTTGTGTTATTTTTATCAGCAGCCTGCATTTGTTTTAAACAAAAATCCTCCATCTTCATCTTCACAAGAATGCGTACAAAATTTATATAACCAATTTTTGAATTTCTAGATATGATTTCGTTCGAAGATTTCCTCCTCCGCCCTTCCAAGGTTGTCGATCCATTCAATCGTTTCGTAGCAAAAATTGACCCGTTTCTCACTCTTGTGGAATTTTGTCAAGTGATTGGACCCAGACCTCTCGCTGTTGTCTCTCAACAACCAAACGACAAAAGTAAGCTCAAAATAATTTTTTTCGAAAACGTTTGA</canonical>
            <polymorphic>AAACAATTTCAGAATAAAATAAATAAAGTTGGATTAAAACTGCAGTGAAATCTTCAACAACCAAAACAGACAGTATTGCTAACATATACCAGATTCGTCGGTTAAGAATCAAAAAAGAGTTACAAGGTGGCCGAGTAGTGCAACCCCGCCGGCCACGGCCTCTGCCTTTGGATAGTTAGCAAAACTGGTTCTTTGTGTGTACAGCAGTACAATCAACTCTATTGATGTTCATTTACCAGCATTTACCGGCATTCTCTGGTTGTACTGAGTTTGTATCGATAGAAATTATATTTTTATATACGATTGGTGCATACCTTGTAATTTAAATATTTTAGTTGAATATTTTAAACTATAGAATATTAATGTATTAGATAAAAGTTTTAGAAAAGTACATTGATGGTTATTTTTATTCCAGAAATCTGCAATGCCGCTTGTATTTCTCAGATACCGGAAATATACATAGAAACATTTATATCTATCTCAATTTCAGCTTTTTTTTWAAATTAAATGAAACGTTTTAAAATCCGCACGTAATCATAAAACGATGTTTTTACGGTACTTACTGTTTGTTTTTTCGAATTTCCCTTCTCTTGTTTTGCAATTTTAAAATTTTTAATACCGTAACATTGAAGGCGCATTCTAAAGTTTTGTTCGAGGGTCTCGCAGTCGTCACTCGTGACGATTTACGAGCTTCTTTGTGTTATTTTTATCAGCAGCCTGCATTTGTTTTAAACAAAAATCCTCCATCTTCATCTTCACAAGAATGCGTACAAAATTTATATAACCAATTTTTGAATTTCTAGATATGATTTCGTTCGAAGATTTCCTCCTCCGCCCTTCCAAGGTTGTCGATCCATTCAATCGTTTCGTAGCAAAAATTGACCCGTTTCTCACTCTTGTGGAATTTTGTCAAGTGATTGGACCCAGACCTCTCGCTGTTGTCTCTCAACAACCAAACGACAAAAGTAAGCTCAAAATAATTTTTTTCGAAAACGTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>324 270 154 125 86 22 19</canonical_bands>
                <polymorphic_bands>324 270 173 125 86 22</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>271 221 139 116 86 68 34 22 15 14 9 5</canonical_bands>
                <polymorphic_bands>271 221 144 116 86 68 34 22 15 14 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGGTGCATACCTTGTAATTT</pcr_primer_p1>
		<pcr_primer_p2>CGTAAAAACATCGTTTTATGATTA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ATTGGTGCATACCTTGTAATTTAAATATTTTAGTTGAATATTTTAAACTATAGAATATTAATGTATTAGATAAAAGTTTTAGAAAAGTACATTGATGGTTATTTTTATTCCAGAAATCTGCAATGCCGCTTGTATTTCTCAGATACCGGAAATATACATAGAAACATTTATATCTATCTCAATTTCAGCTTTTTTTTTAAATTAAATGAAACGTTTTAAAATCCGCACGTAATCATAAAACGATGTTTTTACG</canonical_amplicon>
		<polymorphic_amplicon>ATTGGTGCATACCTTGTAATTTAAATATTTTAGTTGAATATTTTAAACTATAGAATATTAATGTATTAGATAAAAGTTTTAGAAAAGTACATTGATGGTTATTTTTATTCCAGAAATCTGCAATGCCGCTTGTATTTCTCAGATACCGGAAATATACATAGAAACATTTATATCTATCTCAATTTCAGCTTTTTTTTWAAATTAAATGAAACGTTTTAAAATCCGCACGTAATCATAAAACGATGTTTTTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16931</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>553555</contig_pos>
        <strand>+</strand>
        <context>AAAATCCCGA[C/T]AAAATCAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAGCGTCTTCAAATTATCCTTTTTTGTCCCACAAGGAAGAAAATCCCGA</left_flank>
        <right_flank>AAAATCAAAAATAGATGAATCCACACCTTTGAAAATTATGACGTTAAATC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCTAGGGTACCGCACTCTTACCGTACTCTTCTTCCTACTCTTTCTGTAAAAATTTTTGCTTCAACTTTTCTAGGTGTCCAAACTTTTAGGAATTGAGTTCCTAGTTTCAGTTATTTTTCAATTTTTAGTCCCTACGCATTTGTTCCACAACAAGGATACCAACAACAGAATAACTTCCAACCATACAACGGATATCCTCAACAACAACAACAACAACAACAACAAGGAAATCAGTATTACAACTATAATAATGGAAACTACAATCAGGTATGTAATGATTTTGAAATTTTTTATTCATCTTCTTGACTGTCGGCTCGTAACTTTTAGTCAGAAGTTGTGGAGGTTTCGGCTTTTAGACGGAACTTGCCCAAAAACGGCTGTATGGCGGGTCACGGGCAGGTTTTGGTCGGAACCTTGTCATAAGTTTTTTAGAGTTTCCTCGACGCCCGAGCGTCTTCAAATTATCCTTTTTTGTCCCACAAGGAAGAAAATCCCGATAAAATCAAAAATAGATGAATCCACACCTTTGAAAATTATGACGTTAAATCGGATAAGGTGTTGAAGTGTGTCTCTTGTCAGATTGGTTTTTGGTTGGATGGTATGCCTATGGCATCGCCGTTTTGCAGTGTCATCCTTTATGAGAAAACACGTCCTGGAAAAAGAAAAGAGGCAACACACAGGATAATTGAACTGGATAACGGGAGGAACACAAAGACAAAAACGAATAATCGAAAAGAAAGAAAATGACGAATTTGGGCAGATACATAGAAAATATCTGGTTGGATGAATAATCGACTTTTTATAAAGACAAATTCCAAAGATACTTTAGTCTTTTGGAATTACTAATATTTCAAATTGCAGCAACAACAATACAATGGATACAACAACAACAATCAACAACAGCAACAATACAATAACTACAACCAACAGCAACAAATTGTTCAACAACCACAACAACCACAGGTTCCTCAACAACCCCAACCACAACCACAAGTACC</canonical>
            <polymorphic>AATCTAGGGTACCGCACTCTTACCGTACTCTTCTTCCTACTCTTTCTGTAAAAATTTTTGCTTCAACTTTTCTAGGTGTCCAAACTTTTAGGAATTGAGTTCCTAGTTTCAGTTATTTTTCAATTTTTAGTCCCTACGCATTTGTTCCACAACAAGGATACCAACAACAGAATAACTTCCAACCATACAACGGATATCCTCAACAACAACAACAACAACAACAACAAGGAAATCAGTATTACAACTATAATAATGGAAACTACAATCAGGTATGTAATGATTTTGAAATTTTTTATTCATCTTCTTGACTGTCGGCTCGTAACTTTTAGTCAGAAGTTGTGGAGGTTTCGGCTTTTAGACGGAACTTGCCCAAAAACGGCTGTATGGCGGGTCACGGGCAGGTTTTGGTCGGAACCTTGTCATAAGTTTTTTAGAGTTTCCTCGACGCCCGAGCGTCTTCAAATTATCCTTTTTTGTCCCACAAGGAAGAAAATCCCGAYAAAATCAAAAATAGATGAATCCACACCTTTGAAAATTATGACGTTAAATCGGATAAGGTGTTGAAGTGTGTCTCTTGTCAGATTGGTTTTTGGTTGGATGGTATGCCTATGGCATCGCCGTTTTGCAGTGTCATCCTTTATGAGAAAACACGTCCTGGAAAAAGAAAAGAGGCAACACACAGGATAATTGAACTGGATAACGGGAGGAACACAAAGACAAAAACGAATAATCGAAAAGAAAGAAAATGACGAATTTGGGCAGATACATAGAAAATATCTGGTTGGATGAATAATCGACTTTTTATAAAGACAAATTCCAAAGATACTTTAGTCTTTTGGAATTACTAATATTTCAAATTGCAGCAACAACAATACAATGGATACAACAACAACAATCAACAACAGCAACAATACAATAACTACAACCAACAGCAACAAATTGTTCAACAACCACAACAACCACAGGTTCCTCAACAACCCCAACCACAACCACAAGTACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATCAGGTATGTAATGATTTTGA</pcr_primer_p1>
		<pcr_primer_p2>TATCCGATTTAACGTCATAATTT</pcr_primer_p2>
		<pcr_amplicon_size>293</pcr_amplicon_size>
		<canonical_amplicon>CAATCAGGTATGTAATGATTTTGAAATTTTTTATTCATCTTCTTGACTGTCGGCTCGTAACTTTTAGTCAGAAGTTGTGGAGGTTTCGGCTTTTAGACGGAACTTGCCCAAAAACGGCTGTATGGCGGGTCACGGGCAGGTTTTGGTCGGAACCTTGTCATAAGTTTTTTAGAGTTTCCTCGACGCCCGAGCGTCTTCAAATTATCCTTTTTTGTCCCACAAGGAAGAAAATCCCGATAAAATCAAAAATAGATGAATCCACACCTTTGAAAATTATGACGTTAAATCGGATA</canonical_amplicon>
		<polymorphic_amplicon>CAATCAGGTATGTAATGATTTTGAAATTTTTTATTCATCTTCTTGACTGTCGGCTCGTAACTTTTAGTCAGAAGTTGTGGAGGTTTCGGCTTTTAGACGGAACTTGCCCAAAAACGGCTGTATGGCGGGTCACGGGCAGGTTTTGGTCGGAACCTTGTCATAAGTTTTTTAGAGTTTCCTCGACGCCCGAGCGTCTTCAAATTATCCTTTTTTGTCCCACAAGGAAGAAAATCCCGAYAAAATCAAAAATAGATGAATCCACACCTTTGAAAATTATGACGTTAAATCGGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16932</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>553733</contig_pos>
        <strand>+</strand>
        <context>AGAGGCAACA[C/G]ACAGGATAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTGTCATCCTTTATGAGAAAACACGTCCTGGAAAAAGAAAAGAGGCAACA</left_flank>
        <right_flank>ACAGGATAATTGAACTGGATAACGGGAGGAACACAAAGACAAAAACGAAT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAACCATACAACGGATATCCTCAACAACAACAACAACAACAACAACAAGGAAATCAGTATTACAACTATAATAATGGAAACTACAATCAGGTATGTAATGATTTTGAAATTTTTTATTCATCTTCTTGACTGTCGGCTCGTAACTTTTAGTCAGAAGTTGTGGAGGTTTCGGCTTTTAGACGGAACTTGCCCAAAAACGGCTGTATGGCGGGTCACGGGCAGGTTTTGGTCGGAACCTTGTCATAAGTTTTTTAGAGTTTCCTCGACGCCCGAGCGTCTTCAAATTATCCTTTTTTGTCCCACAAGGAAGAAAATCCCGATAAAATCAAAAATAGATGAATCCACACCTTTGAAAATTATGACGTTAAATCGGATAAGGTGTTGAAGTGTGTCTCTTGTCAGATTGGTTTTTGGTTGGATGGTATGCCTATGGCATCGCCGTTTTGCAGTGTCATCCTTTATGAGAAAACACGTCCTGGAAAAAGAAAAGAGGCAACACACAGGATAATTGAACTGGATAACGGGAGGAACACAAAGACAAAAACGAATAATCGAAAAGAAAGAAAATGACGAATTTGGGCAGATACATAGAAAATATCTGGTTGGATGAATAATCGACTTTTTATAAAGACAAATTCCAAAGATACTTTAGTCTTTTGGAATTACTAATATTTCAAATTGCAGCAACAACAATACAATGGATACAACAACAACAATCAACAACAGCAACAATACAATAACTACAACCAACAGCAACAAATTGTTCAACAACCACAACAACCACAGGTTCCTCAACAACCCCAACCACAACCACAAGTACCACACCAATCGGTTCAACCAGTTCAACCACAACAGCCACCAGTGCCATCGCCACAAAACGGTGGACCACAACAAGTGCAATCCTTCGAATCGAACACTCAAATCGTTCAACCAGTCAGAGCAGTTCAAGCCAATGCTCAAGTTGTTCAGCCAGTTTTAAAACCAGCTGTAAGTTTTTTT</canonical>
            <polymorphic>CCAACCATACAACGGATATCCTCAACAACAACAACAACAACAACAACAAGGAAATCAGTATTACAACTATAATAATGGAAACTACAATCAGGTATGTAATGATTTTGAAATTTTTTATTCATCTTCTTGACTGTCGGCTCGTAACTTTTAGTCAGAAGTTGTGGAGGTTTCGGCTTTTAGACGGAACTTGCCCAAAAACGGCTGTATGGCGGGTCACGGGCAGGTTTTGGTCGGAACCTTGTCATAAGTTTTTTAGAGTTTCCTCGACGCCCGAGCGTCTTCAAATTATCCTTTTTTGTCCCACAAGGAAGAAAATCCCGATAAAATCAAAAATAGATGAATCCACACCTTTGAAAATTATGACGTTAAATCGGATAAGGTGTTGAAGTGTGTCTCTTGTCAGATTGGTTTTTGGTTGGATGGTATGCCTATGGCATCGCCGTTTTGCAGTGTCATCCTTTATGAGAAAACACGTCCTGGAAAAAGAAAAGAGGCAACASACAGGATAATTGAACTGGATAACGGGAGGAACACAAAGACAAAAACGAATAATCGAAAAGAAAGAAAATGACGAATTTGGGCAGATACATAGAAAATATCTGGTTGGATGAATAATCGACTTTTTATAAAGACAAATTCCAAAGATACTTTAGTCTTTTGGAATTACTAATATTTCAAATTGCAGCAACAACAATACAATGGATACAACAACAACAATCAACAACAGCAACAATACAATAACTACAACCAACAGCAACAAATTGTTCAACAACCACAACAACCACAGGTTCCTCAACAACCCCAACCACAACCACAAGTACCACACCAATCGGTTCAACCAGTTCAACCACAACAGCCACCAGTGCCATCGCCACAAAACGGTGGACCACAACAAGTGCAATCCTTCGAATCGAACACTCAAATCGTTCAACCAGTCAGAGCAGTTCAAGCCAATGCTCAAGTTGTTCAGCCAGTTTTAAAACCAGCTGTAAGTTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>242 163 87 83 60 53 42 35 32 27 25 24 20 19 10 9 9 9 9 9 8 6 6 5 2 2 2 2</canonical_bands>
                <polymorphic_bands>242 163 87 83 61 60 53 42 35 25 24 20 19 10 9 9 9 9 9 8 6 6 5 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATAGATGAATCCACACCTT</pcr_primer_p1>
		<pcr_primer_p2>AAATTCGTCATTTTCTTTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAATAGATGAATCCACACCTTTGAAAATTATGACGTTAAATCGGATAAGGTGTTGAAGTGTGTCTCTTGTCAGATTGGTTTTTGGTTGGATGGTATGCCTATGGCATCGCCGTTTTGCAGTGTCATCCTTTATGAGAAAACACGTCCTGGAAAAAGAAAAGAGGCAACACACAGGATAATTGAACTGGATAACGGGAGGAACACAAAGACAAAAACGAATAATCGAAAAGAAAGAAAATGACGAATTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATAGATGAATCCACACCTTTGAAAATTATGACGTTAAATCGGATAAGGTGTTGAAGTGTGTCTCTTGTCAGATTGGTTTTTGGTTGGATGGTATGCCTATGGCATCGCCGTTTTGCAGTGTCATCCTTTATGAGAAAACACGTCCTGGAAAAAGAAAAGAGGCAACASACAGGATAATTGAACTGGATAACGGGAGGAACACAAAGACAAAAACGAATAATCGAAAAGAAAGAAAATGACGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16933</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>14996</contig_pos>
        <strand>+</strand>
        <context>CTTAATTAGA[C/G]GGTGCCTTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACGTATAGAGTGAGCTCATATTACGGTAATCGATAAAACACTTAATTAGA</left_flank>
        <right_flank>GGTGCCTTTATAACCCTGCCTATTTGTAACTATTTGGCCTTTTTCTGACG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCACAATAGGGGGTAGAATGTGTAAATAAATGTGGGTGGAACAAAAATGTATGCACATAAAAATGAGTGGTCGATTATAAGCATAACCTTTTTTTGGGGATGTTGGAATTTCGGGGGAATGGTGGGATGAGGAGAGCAAAGAAACAGATAATAATGAATTGATTTTTGGGATTTTTTGAAAAGTCAAAAATTGAAACAATAAAAATGACATGAAACGAAGTTAGTATAATATTGAAACAAGCACTTTGTGCTTGCAGTTTGAGCTCAATTATCTCAGTTCTTATGAAAGATTTCAACAACTTCTCAACTGATAAATTATAGGTGATATTATGATAAATATTTTATCAGTTGACAAATGTTTGATATCTCTCAAAGGAACCGAGATAATTGAGCTCAAAGCACGTGTATAGGGTAGGCGTCTATTACAGCAACTGTGGTAAAAGTGAAACGTATAGAGTGAGCTCATATTACGGTAATCGATAAAACACTTAATTAGACGGTGCCTTTATAACCCTGCCTATTTGTAACTATTTGGCCTTTTTCTGACGGGGGGGGGGCATGAGAAAAGGGGGCCATGGGAAAAGGGGGACCCATGAGAAAAAGGAGGGGGGGGGGGGCATTGGAAAAATTATACCTAAGTTAAGATTAACCAATTTTCTCAATTTTTGTGGTTGTTTCCATTAAATTTCGCATACTTGCGAAAATCGTCGAAAGCGCGGAAGGCCCGGGCCGGCCCTTGAAAAATTTTGAGGGCCCGGTCCGGCCCGGAAGGCCCGGCAGGTATTTTTTGGTCGAAATTTCTCAAAAAAAATTTTTTTTGATAAATTTTTGAGAATTTTTAAACAAAAAAACTAGTTTTTGAGAAAAAAAATGTTCTTTTGCTTCAAAAATGCAATTTTTTCTTCGAGTTCAACTTTGGAAACATTCAGGAAAAAAACATTTTTCAAAAAATTGTTTAAACATTTACAAATTCAATATTTACAATTTAGCTTAAAATT</canonical>
            <polymorphic>AAGCACAATAGGGGGTAGAATGTGTAAATAAATGTGGGTGGAACAAAAATGTATGCACATAAAAATGAGTGGTCGATTATAAGCATAACCTTTTTTTGGGGATGTTGGAATTTCGGGGGAATGGTGGGATGAGGAGAGCAAAGAAACAGATAATAATGAATTGATTTTTGGGATTTTTTGAAAAGTCAAAAATTGAAACAATAAAAATGACATGAAACGAAGTTAGTATAATATTGAAACAAGCACTTTGTGCTTGCAGTTTGAGCTCAATTATCTCAGTTCTTATGAAAGATTTCAACAACTTCTCAACTGATAAATTATAGGTGATATTATGATAAATATTTTATCAGTTGACAAATGTTTGATATCTCTCAAAGGAACCGAGATAATTGAGCTCAAAGCACGTGTATAGGGTAGGCGTCTATTACAGCAACTGTGGTAAAAGTGAAACGTATAGAGTGAGCTCATATTACGGTAATCGATAAAACACTTAATTAGASGGTGCCTTTATAACCCTGCCTATTTGTAACTATTTGGCCTTTTTCTGACGGGGGGGGGGCATGAGAAAAGGGGGCCATGGGAAAAGGGGGACCCATGAGAAAAAGGAGGGGGGGGGGGGCATTGGAAAAATTATACCTAAGTTAAGATTAACCAATTTTCTCAATTTTTGTGGTTGTTTCCATTAAATTTCGCATACTTGCGAAAATCGTCGAAAGCGCGGAAGGCCCGGGCCGGCCCTTGAAAAATTTTGAGGGCCCGGTCCGGCCCGGAAGGCCCGGCAGGTATTTTTTGGTCGAAATTTCTCAAAAAAAATTTTTTTTGATAAATTTTTGAGAATTTTTAAACAAAAAAACTAGTTTTTGAGAAAAAAAATGTTCTTTTGCTTCAAAAATGCAATTTTTTCTTCGAGTTCAACTTTGGAAACATTCAGGAAAAAAACATTTTTCAAAAAATTGTTTAAACATTTACAAATTCAATATTTACAATTTAGCTTAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>499 435 39 27</canonical_bands>
                <polymorphic_bands>526 435 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTAAAAGTGAAACGTATAGAGTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTGATTTGTTCTGAATTTGTAA</pcr_primer_p2>
		<pcr_amplicon_size>938</pcr_amplicon_size>
		<canonical_amplicon>GGTAAAAGTGAAACGTATAGAGTGAGCTCATATTACGGTAATCGATAAAACACTTAATTAGACGGTGCCTTTATAACCCTGCCTA</canonical_amplicon>
		<polymorphic_amplicon>GGTAAAAGTGAAACGTATAGAGTGAGCTCATATTACGGTAATCGATAAAACACTTAATTAGASGGTGCCTTTATAACCCTGCCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16940</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>142770</contig_pos>
        <strand>+</strand>
        <context>TTAAAATTCA[C/T]AATTTATAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCA</left_flank>
        <right_flank>AATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTAAAACAGTTCTTTCAGATAGTCGAATTACGCGCGAAGCACGTAATTTATGACGCAAATTGGATGATGCTGTGTTATTTTTCGCAAAAAAAAGTTATAGGTGTGTGTGTGTGTGTGTGTGACAGATTATAATTTTTAGACAGTTTTCATGGAGAAGCTGGCGACCGGAAATACAGCTACAGTAGCATTTTTGGGTTACTGTAATTTCGAATTTTTGGAAGTTTGAAAAGTTTCCAAAATGATGAGAGAAGTTAGGAAAAACTACAGTAGCATTGTTAGGTTACTGTAGGGATTTGGAAATTAAAAAATTATTTTTAAAACTTAAAATTTAGAAGATTTTAGTGTCGGGTTACTGTAGGAATTTGGGACCTTGGAAATCCCGAAAAACTAGAGAAAAAAATCAGAAATTTTAAATTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACTTTACGAAAAAAAGGATTATGAGAGAGAGAGAGAGAGAGAGATTAAAGATTACTGTAGGTTACGGTAGCTACTGTAGTGAATCTTTAGTGTTATTGGAAGAGTACTATAGGTGAGCAAAAATTTTTCTGTTTGGAAAATTTTTTAATTTTCAAAATAGAAATTTCCAATACCTATTTCCCAGATTACTGTAGCTCTACGAAATAATGATTATTATGAAATTTTCTCAAAATCCAGTTTGAAAGATTACTGTAGCCAAAGTACTGTATTTGCAAAGCAAGCGTAGTAATCCTTATAAATGTCATAAGGATTACTGTAACAGACTGTTCATGAGGTTA</canonical>
            <polymorphic>CTTTAAAACAGTTCTTTCAGATAGTCGAATTACGCGCGAAGCACGTAATTTATGACGCAAATTGGATGATGCTGTGTTATTTTTCGCAAAAAAAAGTTATAGGTGTGTGTGTGTGTGTGTGTGACAGATTATAATTTTTAGACAGTTTTCATGGAGAAGCTGGCGACCGGAAATACAGCTACAGTAGCATTTTTGGGTTACTGTAATTTCGAATTTTTGGAAGTTTGAAAAGTTTCCAAAATGATGAGAGAAGTTAGGAAAAACTACAGTAGCATTGTTAGGTTACTGTAGGGATTTGGAAATTAAAAAATTATTTTTAAAACTTAAAATTTAGAAGATTTTAGTGTCGGGTTACTGTAGGAATTTGGGACCTTGGAAATCCCGAAAAACTAGAGAAAAAAATCAGAAATTTTAAATTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCAYAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACTTTACGAAAAAAAGGATTATGAGAGAGAGAGAGAGAGAGAGATTAAAGATTACTGTAGGTTACGGTAGCTACTGTAGTGAATCTTTAGTGTTATTGGAAGAGTACTATAGGTGAGCAAAAATTTTTCTGTTTGGAAAATTTTTTAATTTTCAAAATAGAAATTTCCAATACCTATTTCCCAGATTACTGTAGCTCTACGAAATAATGATTATTATGAAATTTTCTCAAAATCCAGTTTGAAAGATTACTGTAGCCAAAGTACTGTATTTGCAAAGCAAGCGTAGTAATCCTTATAAATGTCATAAGGATTACTGTAACAGACTGTTCATGAGGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTCTCCAGATTACTGTAGC</pcr_primer_p1>
		<pcr_primer_p2>AGTCATCCAGAAAAATTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCAYAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16941</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>142810</contig_pos>
        <strand>+</strand>
        <context>TCATTCTTAA[A/T]TTGATTGGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAA</left_flank>
        <right_flank>TTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCGGAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCACGTAATTTATGACGCAAATTGGATGATGCTGTGTTATTTTTCGCAAAAAAAAGTTATAGGTGTGTGTGTGTGTGTGTGTGACAGATTATAATTTTTAGACAGTTTTCATGGAGAAGCTGGCGACCGGAAATACAGCTACAGTAGCATTTTTGGGTTACTGTAATTTCGAATTTTTGGAAGTTTGAAAAGTTTCCAAAATGATGAGAGAAGTTAGGAAAAACTACAGTAGCATTGTTAGGTTACTGTAGGGATTTGGAAATTAAAAAATTATTTTTAAAACTTAAAATTTAGAAGATTTTAGTGTCGGGTTACTGTAGGAATTTGGGACCTTGGAAATCCCGAAAAACTAGAGAAAAAAATCAGAAATTTTAAATTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACTTTACGAAAAAAAGGATTATGAGAGAGAGAGAGAGAGAGAGATTAAAGATTACTGTAGGTTACGGTAGCTACTGTAGTGAATCTTTAGTGTTATTGGAAGAGTACTATAGGTGAGCAAAAATTTTTCTGTTTGGAAAATTTTTTAATTTTCAAAATAGAAATTTCCAATACCTATTTCCCAGATTACTGTAGCTCTACGAAATAATGATTATTATGAAATTTTCTCAAAATCCAGTTTGAAAGATTACTGTAGCCAAAGTACTGTATTTGCAAAGCAAGCGTAGTAATCCTTATAAATGTCATAAGGATTACTGTAACAGACTGTTCATGAGGTTATGGTAGGTTGGGATACTGTAATTGAGATCAAAGGGTTACT</canonical>
            <polymorphic>GCACGTAATTTATGACGCAAATTGGATGATGCTGTGTTATTTTTCGCAAAAAAAAGTTATAGGTGTGTGTGTGTGTGTGTGTGACAGATTATAATTTTTAGACAGTTTTCATGGAGAAGCTGGCGACCGGAAATACAGCTACAGTAGCATTTTTGGGTTACTGTAATTTCGAATTTTTGGAAGTTTGAAAAGTTTCCAAAATGATGAGAGAAGTTAGGAAAAACTACAGTAGCATTGTTAGGTTACTGTAGGGATTTGGAAATTAAAAAATTATTTTTAAAACTTAAAATTTAGAAGATTTTAGTGTCGGGTTACTGTAGGAATTTGGGACCTTGGAAATCCCGAAAAACTAGAGAAAAAAATCAGAAATTTTAAATTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAAWTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACTTTACGAAAAAAAGGATTATGAGAGAGAGAGAGAGAGAGAGATTAAAGATTACTGTAGGTTACGGTAGCTACTGTAGTGAATCTTTAGTGTTATTGGAAGAGTACTATAGGTGAGCAAAAATTTTTCTGTTTGGAAAATTTTTTAATTTTCAAAATAGAAATTTCCAATACCTATTTCCCAGATTACTGTAGCTCTACGAAATAATGATTATTATGAAATTTTCTCAAAATCCAGTTTGAAAGATTACTGTAGCCAAAGTACTGTATTTGCAAAGCAAGCGTAGTAATCCTTATAAATGTCATAAGGATTACTGTAACAGACTGTTCATGAGGTTATGGTAGGTTGGGATACTGTAATTGAGATCAAAGGGTTACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>138 135 89 73 72 58 52 46 42 40 39 37 34 21 19 17 15 13 10 8 8 7 7 7 7 6</canonical_bands>
                <polymorphic_bands>138 135 89 79 73 72 58 52 46 40 39 34 21 19 17 15 13 10 8 8 7 7 7 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTCTCCAGATTACTGTAGC</pcr_primer_p1>
		<pcr_primer_p2>AGTCATCCAGAAAAATTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAAWTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16942</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>142855</contig_pos>
        <strand>+</strand>
        <context>TGTAGARWTT[C/T]GRAACTTTSA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTT</left_flank>
        <right_flank>GGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAAAAAAAAGTTATAGGTGTGTGTGTGTGTGTGTGTGACAGATTATAATTTTTAGACAGTTTTCATGGAGAAGCTGGCGACCGGAAATACAGCTACAGTAGCATTTTTGGGTTACTGTAATTTCGAATTTTTGGAAGTTTGAAAAGTTTCCAAAATGATGAGAGAAGTTAGGAAAAACTACAGTAGCATTGTTAGGTTACTGTAGGGATTTGGAAATTAAAAAATTATTTTTAAAACTTAAAATTTAGAAGATTTTAGTGTCGGGTTACTGTAGGAATTTGGGACCTTGGAAATCCCGAAAAACTAGAGAAAAAAATCAGAAATTTTAAATTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACTTTACGAAAAAAAGGATTATGAGAGAGAGAGAGAGAGAGAGATTAAAGATTACTGTAGGTTACGGTAGCTACTGTAGTGAATCTTTAGTGTTATTGGAAGAGTACTATAGGTGAGCAAAAATTTTTCTGTTTGGAAAATTTTTTAATTTTCAAAATAGAAATTTCCAATACCTATTTCCCAGATTACTGTAGCTCTACGAAATAATGATTATTATGAAATTTTCTCAAAATCCAGTTTGAAAGATTACTGTAGCCAAAGTACTGTATTTGCAAAGCAAGCGTAGTAATCCTTATAAATGTCATAAGGATTACTGTAACAGACTGTTCATGAGGTTATGGTAGGTTGGGATACTGTAATTGAGATCAAAGGGTTACTGTAGGTATGACATTTTCAAAGATTACGGTAGATGTGAATATAAAG</canonical>
            <polymorphic>GCAAAAAAAAGTTATAGGTGTGTGTGTGTGTGTGTGTGACAGATTATAATTTTTAGACAGTTTTCATGGAGAAGCTGGCGACCGGAAATACAGCTACAGTAGCATTTTTGGGTTACTGTAATTTCGAATTTTTGGAAGTTTGAAAAGTTTCCAAAATGATGAGAGAAGTTAGGAAAAACTACAGTAGCATTGTTAGGTTACTGTAGGGATTTGGAAATTAAAAAATTATTTTTAAAACTTAAAATTTAGAAGATTTTAGTGTCGGGTTACTGTAGGAATTTGGGACCTTGGAAATCCCGAAAAACTAGAGAAAAAAATCAGAAATTTTAAATTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTYGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACTTTACGAAAAAAAGGATTATGAGAGAGAGAGAGAGAGAGAGATTAAAGATTACTGTAGGTTACGGTAGCTACTGTAGTGAATCTTTAGTGTTATTGGAAGAGTACTATAGGTGAGCAAAAATTTTTCTGTTTGGAAAATTTTTTAATTTTCAAAATAGAAATTTCCAATACCTATTTCCCAGATTACTGTAGCTCTACGAAATAATGATTATTATGAAATTTTCTCAAAATCCAGTTTGAAAGATTACTGTAGCCAAAGTACTGTATTTGCAAAGCAAGCGTAGTAATCCTTATAAATGTCATAAGGATTACTGTAACAGACTGTTCATGAGGTTATGGTAGGTTGGGATACTGTAATTGAGATCAAAGGGTTACTGTAGGTATGACATTTTCAAAGATTACGGTAGATGTGAATATAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>499 320 181</canonical_bands>
                <polymorphic_bands>680 320</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTCTCCAGATTACTGTAGC</pcr_primer_p1>
		<pcr_primer_p2>AGTCATCCAGAAAAATTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTYGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16943</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>142864</contig_pos>
        <strand>+</strand>
        <context>TYGRAACTTT[C/G]AGTGGAAACG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCGGAACTTT</left_flank>
        <right_flank>AGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTATAGGTGTGTGTGTGTGTGTGTGTGACAGATTATAATTTTTAGACAGTTTTCATGGAGAAGCTGGCGACCGGAAATACAGCTACAGTAGCATTTTTGGGTTACTGTAATTTCGAATTTTTGGAAGTTTGAAAAGTTTCCAAAATGATGAGAGAAGTTAGGAAAAACTACAGTAGCATTGTTAGGTTACTGTAGGGATTTGGAAATTAAAAAATTATTTTTAAAACTTAAAATTTAGAAGATTTTAGTGTCGGGTTACTGTAGGAATTTGGGACCTTGGAAATCCCGAAAAACTAGAGAAAAAAATCAGAAATTTTAAATTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACTTTACGAAAAAAAGGATTATGAGAGAGAGAGAGAGAGAGAGATTAAAGATTACTGTAGGTTACGGTAGCTACTGTAGTGAATCTTTAGTGTTATTGGAAGAGTACTATAGGTGAGCAAAAATTTTTCTGTTTGGAAAATTTTTTAATTTTCAAAATAGAAATTTCCAATACCTATTTCCCAGATTACTGTAGCTCTACGAAATAATGATTATTATGAAATTTTCTCAAAATCCAGTTTGAAAGATTACTGTAGCCAAAGTACTGTATTTGCAAAGCAAGCGTAGTAATCCTTATAAATGTCATAAGGATTACTGTAACAGACTGTTCATGAGGTTATGGTAGGTTGGGATACTGTAATTGAGATCAAAGGGTTACTGTAGGTATGACATTTTCAAAGATTACGGTAGATGTGAATATAAAGCGTCAAAAA</canonical>
            <polymorphic>AGTTATAGGTGTGTGTGTGTGTGTGTGTGACAGATTATAATTTTTAGACAGTTTTCATGGAGAAGCTGGCGACCGGAAATACAGCTACAGTAGCATTTTTGGGTTACTGTAATTTCGAATTTTTGGAAGTTTGAAAAGTTTCCAAAATGATGAGAGAAGTTAGGAAAAACTACAGTAGCATTGTTAGGTTACTGTAGGGATTTGGAAATTAAAAAATTATTTTTAAAACTTAAAATTTAGAAGATTTTAGTGTCGGGTTACTGTAGGAATTTGGGACCTTGGAAATCCCGAAAAACTAGAGAAAAAAATCAGAAATTTTAAATTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCGGAACTTTSAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACTTTACGAAAAAAAGGATTATGAGAGAGAGAGAGAGAGAGAGATTAAAGATTACTGTAGGTTACGGTAGCTACTGTAGTGAATCTTTAGTGTTATTGGAAGAGTACTATAGGTGAGCAAAAATTTTTCTGTTTGGAAAATTTTTTAATTTTCAAAATAGAAATTTCCAATACCTATTTCCCAGATTACTGTAGCTCTACGAAATAATGATTATTATGAAATTTTCTCAAAATCCAGTTTGAAAGATTACTGTAGCCAAAGTACTGTATTTGCAAAGCAAGCGTAGTAATCCTTATAAATGTCATAAGGATTACTGTAACAGACTGTTCATGAGGTTATGGTAGGTTGGGATACTGTAATTGAGATCAAAGGGTTACTGTAGGTATGACATTTTCAAAGATTACGGTAGATGTGAATATAAAGCGTCAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTCTCCAGATTACTGTAGC</pcr_primer_p1>
		<pcr_primer_p2>AGTCATCCAGAAAAATTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCGGAACTTTSAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16966</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>143024</contig_pos>
        <strand>+</strand>
        <context>AATCTTTAGT[A/G]TTATTGGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGATTAAAGATTACTGTAGGTTACGGTAGCTACTGTAGTGAATCTTTAGT</left_flank>
        <right_flank>TTATTGGAAGAGTACTATAGGTGAGCAAAAATTTTTCTGTTTGGAAAATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGGAAAAACTACAGTAGCATTGTTAGGTTACTGTAGGGATTTGGAAATTAAAAAATTATTTTTAAAACTTAAAATTTAGAAGATTTTAGTGTCGGGTTACTGTAGGAATTTGGGACCTTGGAAATCCCGAAAAACTAGAGAAAAAAATCAGAAATTTTAAATTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACTTTACGAAAAAAAGGATTATGAGAGAGAGAGAGAGAGAGAGATTAAAGATTACTGTAGGTTACGGTAGCTACTGTAGTGAATCTTTAGTGTTATTGGAAGAGTACTATAGGTGAGCAAAAATTTTTCTGTTTGGAAAATTTTTTAATTTTCAAAATAGAAATTTCCAATACCTATTTCCCAGATTACTGTAGCTCTACGAAATAATGATTATTATGAAATTTTCTCAAAATCCAGTTTGAAAGATTACTGTAGCCAAAGTACTGTATTTGCAAAGCAAGCGTAGTAATCCTTATAAATGTCATAAGGATTACTGTAACAGACTGTTCATGAGGTTATGGTAGGTTGGGATACTGTAATTGAGATCAAAGGGTTACTGTAGGTATGACATTTTCAAAGATTACGGTAGATGTGAATATAAAGCGTCAAAAAAAATTATTTTTGGAAGGAATAAACAGGATTACAAATAATTTCAAAATCAAAAATTAATTTGTTAACTTGGACGTTTTTTTAGGCTCCGCCCACTTTTTTCTCAAGAAAATGACACAAAGAATGATGAGAGATTTCATCAACTTTCAGAAATCATTTCTGA</canonical>
            <polymorphic>TAGGAAAAACTACAGTAGCATTGTTAGGTTACTGTAGGGATTTGGAAATTAAAAAATTATTTTTAAAACTTAAAATTTAGAAGATTTTAGTGTCGGGTTACTGTAGGAATTTGGGACCTTGGAAATCCCGAAAAACTAGAGAAAAAAATCAGAAATTTTAAATTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACTTTACGAAAAAAAGGATTATGAGAGAGAGAGAGAGAGAGAGATTAAAGATTACTGTAGGTTACGGTAGCTACTGTAGTGAATCTTTAGTRTTATTGGAAGAGTACTATAGGTGAGCAAAAATTTTTCTGTTTGGAAAATTTTTTAATTTTCAAAATAGAAATTTCCAATACCTATTTCCCAGATTACTGTAGCTCTACGAAATAATGATTATTATGAAATTTTCTCAAAATCCAGTTTGAAAGATTACTGTAGCCAAAGTACTGTATTTGCAAAGCAAGCGTAGTAATCCTTATAAATGTCATAAGGATTACTGTAACAGACTGTTCATGAGGTTATGGTAGGTTGGGATACTGTAATTGAGATCAAAGGGTTACTGTAGGTATGACATTTTCAAAGATTACGGTAGATGTGAATATAAAGCGTCAAAAAAAATTATTTTTGGAAGGAATAAACAGGATTACAAATAATTTCAAAATCAAAAATTAATTTGTTAACTTGGACGTTTTTTTAGGCTCCGCCCACTTTTTTCTCAAGAAAATGACACAAAGAATGATGAGAGATTTCATCAACTTTCAGAAATCATTTCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>299 252 145 110 92 46 23 22 11</canonical_bands>
                <polymorphic_bands>299 252 145 110 92 46 34 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAACGGATTACTGTAGAGATT</pcr_primer_p1>
		<pcr_primer_p2>CTGGGAAATAGGTATTGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACTTTACGAAAAAAAGGATTATGAGAGAGAGAGAGAGAGAGAGATTAAAGATTACTGTAGGTTACGGTAGCTACTGTAGTGAATCTTTAGTGTTATTGGAAGAGTACTATAGGTGAGCAAAAATTTTTCTGTTTGGAAAATTTTTTAATTTTCAAAATAGAAATTTCCAATACCTATTTCCCAG</canonical_amplicon>
		<polymorphic_amplicon>GGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACTTTACGAAAAAAAGGATTATGAGAGAGAGAGAGAGAGAGAGATTAAAGATTACTGTAGGTTACGGTAGCTACTGTAGTGAATCTTTAGTRTTATTGGAAGAGTACTATAGGTGAGCAAAAATTTTTCTGTTTGGAAAATTTTTTAATTTTCAAAATAGAAATTTCCAATACCTATTTCCCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16967</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>143062</contig_pos>
        <strand></strand>
        <context>AAAATTTTTC[T/A]GTTTGGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGAATCTTTAGTGTTATTGGAAGAGTACTATAGGTGAGCAAAAATTTTTC</left_flank>
        <right_flank>GTTTGGAAAATTTTTTAATTTTCAAAATAGAAATTTCCAATACCTATTTC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTGGAAATTAAAAAATTATTTTTAAAACTTAAAATTTAGAAGATTTTAGTGTCGGGTTACTGTAGGAATTTGGGACCTTGGAAATCCCGAAAAACTAGAGAAAAAAATCAGAAATTTTAAATTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACTTTACGAAAAAAAGGATTATGAGAGAGAGAGAGAGAGAGAGATTAAAGATTACTGTAGGTTACGGTAGCTACTGTAGTGAATCTTTAGTGTTATTGGAAGAGTACTATAGGTGAGCAAAAATTTTTCTGTTTGGAAAATTTTTTAATTTTCAAAATAGAAATTTCCAATACCTATTTCCCAGATTACTGTAGCTCTACGAAATAATGATTATTATGAAATTTTCTCAAAATCCAGTTTGAAAGATTACTGTAGCCAAAGTACTGTATTTGCAAAGCAAGCGTAGTAATCCTTATAAATGTCATAAGGATTACTGTAACAGACTGTTCATGAGGTTATGGTAGGTTGGGATACTGTAATTGAGATCAAAGGGTTACTGTAGGTATGACATTTTCAAAGATTACGGTAGATGTGAATATAAAGCGTCAAAAAAAATTATTTTTGGAAGGAATAAACAGGATTACAAATAATTTCAAAATCAAAAATTAATTTGTTAACTTGGACGTTTTTTTAGGCTCCGCCCACTTTTTTCTCAAGAAAATGACACAAAGAATGATGAGAGATTTCATCAACTTTCAGAAATCATTTCTGACTCAAAATGTCAAAACTACAGTAATCCCTTATCAGTGT</canonical>
            <polymorphic>GATTTGGAAATTAAAAAATTATTTTTAAAACTTAAAATTTAGAAGATTTTAGTGTCGGGTTACTGTAGGAATTTGGGACCTTGGAAATCCCGAAAAACTAGAGAAAAAAATCAGAAATTTTAAATTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACTTTACGAAAAAAAGGATTATGAGAGAGAGAGAGAGAGAGAGATTAAAGATTACTGTAGGTTACGGTAGCTACTGTAGTGAATCTTTAGTGTTATTGGAAGAGTACTATAGGTGAGCAAAAATTTTTCWGTTTGGAAAATTTTTTAATTTTCAAAATAGAAATTTCCAATACCTATTTCCCAGATTACTGTAGCTCTACGAAATAATGATTATTATGAAATTTTCTCAAAATCCAGTTTGAAAGATTACTGTAGCCAAAGTACTGTATTTGCAAAGCAAGCGTAGTAATCCTTATAAATGTCATAAGGATTACTGTAACAGACTGTTCATGAGGTTATGGTAGGTTGGGATACTGTAATTGAGATCAAAGGGTTACTGTAGGTATGACATTTTCAAAGATTACGGTAGATGTGAATATAAAGCGTCAAAAAAAATTATTTTTGGAAGGAATAAACAGGATTACAAATAATTTCAAAATCAAAAATTAATTTGTTAACTTGGACGTTTTTTTAGGCTCCGCCCACTTTTTTCTCAAGAAAATGACACAAAGAATGATGAGAGATTTCATCAACTTTCAGAAATCATTTCTGACTCAAAATGTCAAAACTACAGTAATCCCTTATCAGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAACGGATTACTGTAGAGATT</pcr_primer_p1>
		<pcr_primer_p2>CTGGGAAATAGGTATTGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACTTTACGAAAAAAAGGATTATGAGAGAGAGAGAGAGAGAGAGATTAAAGATTACTGTAGGTTACGGTAGCTACTGTAGTGAATCTTTAGTGTTATTGGAAGAGTACTATAGGTGAGCAAAAATTTTTCTGTTTGGAAAATTTTTTAATTTTCAAAATAGAAATTTCCAATACCTATTTCCCAG</canonical_amplicon>
		<polymorphic_amplicon>GGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACTTTACGAAAAAAAGGATTATGAGAGAGAGAGAGAGAGAGAGATTAAAGATTACTGTAGGTTACGGTAGCTACTGTAGTGAATCTTTAGTGTTATTGGAAGAGTACTATAGGTGAGCAAAAATTTTTCWGTTTGGAAAATTTTTTAATTTTCAAAATAGAAATTTCCAATACCTATTTCCCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16968</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>143089</contig_pos>
        <strand>+</strand>
        <context>AATTTTCAAA[A/C]TAGAAATTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTATAGGTGAGCAAAAATTTTTCTGTTTGGAAAATTTTTTAATTTTCAAA</left_flank>
        <right_flank>TAGAAATTTCCAATACCTATTTCCCAGATTACTGTAGCTCTACGAAATAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTTAAAATTTAGAAGATTTTAGTGTCGGGTTACTGTAGGAATTTGGGACCTTGGAAATCCCGAAAAACTAGAGAAAAAAATCAGAAATTTTAAATTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACTTTACGAAAAAAAGGATTATGAGAGAGAGAGAGAGAGAGAGATTAAAGATTACTGTAGGTTACGGTAGCTACTGTAGTGAATCTTTAGTGTTATTGGAAGAGTACTATAGGTGAGCAAAAATTTTTCTGTTTGGAAAATTTTTTAATTTTCAAAATAGAAATTTCCAATACCTATTTCCCAGATTACTGTAGCTCTACGAAATAATGATTATTATGAAATTTTCTCAAAATCCAGTTTGAAAGATTACTGTAGCCAAAGTACTGTATTTGCAAAGCAAGCGTAGTAATCCTTATAAATGTCATAAGGATTACTGTAACAGACTGTTCATGAGGTTATGGTAGGTTGGGATACTGTAATTGAGATCAAAGGGTTACTGTAGGTATGACATTTTCAAAGATTACGGTAGATGTGAATATAAAGCGTCAAAAAAAATTATTTTTGGAAGGAATAAACAGGATTACAAATAATTTCAAAATCAAAAATTAATTTGTTAACTTGGACGTTTTTTTAGGCTCCGCCCACTTTTTTCTCAAGAAAATGACACAAAGAATGATGAGAGATTTCATCAACTTTCAGAAATCATTTCTGACTCAAAATGTCAAAACTACAGTAATCCCTTATCAGTGTTTACCATGAATATTGTCAAAAGTTTAA</canonical>
            <polymorphic>AAACTTAAAATTTAGAAGATTTTAGTGTCGGGTTACTGTAGGAATTTGGGACCTTGGAAATCCCGAAAAACTAGAGAAAAAAATCAGAAATTTTAAATTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACTTTACGAAAAAAAGGATTATGAGAGAGAGAGAGAGAGAGAGATTAAAGATTACTGTAGGTTACGGTAGCTACTGTAGTGAATCTTTAGTGTTATTGGAAGAGTACTATAGGTGAGCAAAAATTTTTCTGTTTGGAAAATTTTTTAATTTTCAAAMTAGAAATTTCCAATACCTATTTCCCAGATTACTGTAGCTCTACGAAATAATGATTATTATGAAATTTTCTCAAAATCCAGTTTGAAAGATTACTGTAGCCAAAGTACTGTATTTGCAAAGCAAGCGTAGTAATCCTTATAAATGTCATAAGGATTACTGTAACAGACTGTTCATGAGGTTATGGTAGGTTGGGATACTGTAATTGAGATCAAAGGGTTACTGTAGGTATGACATTTTCAAAGATTACGGTAGATGTGAATATAAAGCGTCAAAAAAAATTATTTTTGGAAGGAATAAACAGGATTACAAATAATTTCAAAATCAAAAATTAATTTGTTAACTTGGACGTTTTTTTAGGCTCCGCCCACTTTTTTCTCAAGAAAATGACACAAAGAATGATGAGAGATTTCATCAACTTTCAGAAATCATTTCTGACTCAAAATGTCAAAACTACAGTAATCCCTTATCAGTGTTTACCATGAATATTGTCAAAAGTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGAGTACTATAGGTGAGCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTACCATAACCTCATGAACAGTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAGAGTACTATAGGTGAGCAAAAATTTTTCTGTTTGGAAAATTTTTTAATTTTCAAAATAGAAATTTCCAATACCTATTTCCCAGATTACTGTAGCTCTACGAAATAATGATTATTATGAAATTTTCTCAAAATCCAGTTTGAAAGATTACTGTAGCCAAAGTACTGTATTTGCAAAGCAAGCGTAGTAATCCTTATAAATGTCATAAGGATTACTGTAACAGACTGTTCATGAGGTTATGGTAG</canonical_amplicon>
		<polymorphic_amplicon>GAAGAGTACTATAGGTGAGCAAAAATTTTTCTGTTTGGAAAATTTTTTAATTTTCAAAMTAGAAATTTCCAATACCTATTTCCCAGATTACTGTAGCTCTACGAAATAATGATTATTATGAAATTTTCTCAAAATCCAGTTTGAAAGATTACTGTAGCCAAAGTACTGTATTTGCAAAGCAAGCGTAGTAATCCTTATAAATGTCATAAGGATTACTGTAACAGACTGTTCATGAGGTTATGGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16969</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>144161</contig_pos>
        <strand>+</strand>
        <context>TAAACAAGAG[A/C]AAAAAGATGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCAAAGCACACACATTTGAAAAAAGGCGTTAAATCAGCAATAAACAAGAG</left_flank>
        <right_flank>AAAAAGATGTTAGCATCGAATGGGCTCGAACCCACGCACCTCAAAATCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCAAGATAACGACAGACAATTGCGGGGGAGAAAAGAATTTCTCGGAAAAAGGGGCGGATCCTATTTTGGTTTGGGCTGGAGAACTGATATGGAGAGAGAGATGGAGAGGAGAGAGAGAGAGAGAAAAAGGAGGAAGTGGTTTTTTTTTGAAATTGAAGGATCTATGATTTTCAGAATATTCTGGAATTTCAGAATTTTAGAATCTTGAAAAAGTTCCAAAAATTCGAAATTCCACAAAAAAGTTTTCAAACTAAAAAAAAAAAACGTTGCGAAGTGACGAATCGACACAGGAAGAATCTTATAATAAGTACCTCTTATCACTAGGAATTTTTGCGGAAAATGAGGAAAAATTAGTCTCCCAAAGGTTGGTGCTCTCTTCTCTTTTACAAACAATGAGTCGAAATGTGTAAATGTCGTTTGCTTCTTCCTCCGATTTTTTGATATTAAGCAAAGCACACACATTTGAAAAAAGGCGTTAAATCAGCAATAAACAAGAGCAAAAAGATGTTAGCATCGAATGGGCTCGAACCCACGCACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAG</canonical>
            <polymorphic>CTTCAAGATAACGACAGACAATTGCGGGGGAGAAAAGAATTTCTCGGAAAAAGGGGCGGATCCTATTTTGGTTTGGGCTGGAGAACTGATATGGAGAGAGAGATGGAGAGGAGAGAGAGAGAGAGAAAAAGGAGGAAGTGGTTTTTTTTTGAAATTGAAGGATCTATGATTTTCAGAATATTCTGGAATTTCAGAATTTTAGAATCTTGAAAAAGTTCCAAAAATTCGAAATTCCACAAAAAAGTTTTCAAACTAAAAAAAAAAAACGTTGCGAAGTGACGAATCGACACAGGAAGAATCTTATAATAAGTACCTCTTATCACTAGGAATTTTTGCGGAAAATGAGGAAAAATTAGTCTCCCAAAGGTTGGTGCTCTCTTCTCTTTTACAAACAATGAGTCGAAATGTGTAAATGTCGTTTGCTTCTTCCTCCGATTTTTTGATATTAAGCAAAGCACACACATTTGAAAAAAGGCGTTAAATCAGCAATAAACAAGAGMAAAAAGATGTTAGCATCGAATGGGCTCGAACCCACGCACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAGTCGAAATGTGTAAATGT</pcr_primer_p1>
		<pcr_primer_p2>CATCTCTTCATCCTTTATCATTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AATGAGTCGAAATGTGTAAATGTCGTTTGCTTCTTCCTCCGATTTTTTGATATTAAGCAAAGCACACACATTTGAAAAAAGGCGTTAAATCAGCAATAAACAAGAGCAAAAAGATGTTAGCATCGAATGGGCTCGAACCCACGCACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATG</canonical_amplicon>
		<polymorphic_amplicon>AATGAGTCGAAATGTGTAAATGTCGTTTGCTTCTTCCTCCGATTTTTTGATATTAAGCAAAGCACACACATTTGAAAAAAGGCGTTAAATCAGCAATAAACAAGAGMAAAAAGATGTTAGCATCGAATGGGCTCGAACCCACGCACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16970</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>144241</contig_pos>
        <strand>+</strand>
        <context>GAGGAGCGTT[A/G]CCACTGAGCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCCACGCACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTT</left_flank>
        <right_flank>CCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAACTGATATGGAGAGAGAGATGGAGAGGAGAGAGAGAGAGAGAAAAAGGAGGAAGTGGTTTTTTTTTGAAATTGAAGGATCTATGATTTTCAGAATATTCTGGAATTTCAGAATTTTAGAATCTTGAAAAAGTTCCAAAAATTCGAAATTCCACAAAAAAGTTTTCAAACTAAAAAAAAAAAACGTTGCGAAGTGACGAATCGACACAGGAAGAATCTTATAATAAGTACCTCTTATCACTAGGAATTTTTGCGGAAAATGAGGAAAAATTAGTCTCCCAAAGGTTGGTGCTCTCTTCTCTTTTACAAACAATGAGTCGAAATGTGTAAATGTCGTTTGCTTCTTCCTCCGATTTTTTGATATTAAGCAAAGCACACACATTTGAAAAAAGGCGTTAAATCAGCAATAAACAAGAGCAAAAAGATGTTAGCATCGAATGGGCTCGAACCCACGCACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAA</canonical>
            <polymorphic>GAGAACTGATATGGAGAGAGAGATGGAGAGGAGAGAGAGAGAGAGAAAAAGGAGGAAGTGGTTTTTTTTTGAAATTGAAGGATCTATGATTTTCAGAATATTCTGGAATTTCAGAATTTTAGAATCTTGAAAAAGTTCCAAAAATTCGAAATTCCACAAAAAAGTTTTCAAACTAAAAAAAAAAAACGTTGCGAAGTGACGAATCGACACAGGAAGAATCTTATAATAAGTACCTCTTATCACTAGGAATTTTTGCGGAAAATGAGGAAAAATTAGTCTCCCAAAGGTTGGTGCTCTCTTCTCTTTTACAAACAATGAGTCGAAATGTGTAAATGTCGTTTGCTTCTTCCTCCGATTTTTTGATATTAAGCAAAGCACACACATTTGAAAAAAGGCGTTAAATCAGCAATAAACAAGAGCAAAAAGATGTTAGCATCGAATGGGCTCGAACCCACGCACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTRCCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 301 195</canonical_bands>
                <polymorphic_bands>805 195</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGAGTCGAAATGTGTAAATGT</pcr_primer_p1>
		<pcr_primer_p2>CATCTCTTCATCCTTTATCATTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AATGAGTCGAAATGTGTAAATGTCGTTTGCTTCTTCCTCCGATTTTTTGATATTAAGCAAAGCACACACATTTGAAAAAAGGCGTTAAATCAGCAATAAACAAGAGCAAAAAGATGTTAGCATCGAATGGGCTCGAACCCACGCACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATG</canonical_amplicon>
		<polymorphic_amplicon>AATGAGTCGAAATGTGTAAATGTCGTTTGCTTCTTCCTCCGATTTTTTGATATTAAGCAAAGCACACACATTTGAAAAAAGGCGTTAAATCAGCAATAAACAAGAGCAAAAAGATGTTAGCATCGAATGGGCTCGAACCCACGCACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTRCCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16971</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>144253</contig_pos>
        <strand>+</strand>
        <context>CACTGAGCCA[C/T]GCGGGCAGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCA</left_flank>
        <right_flank>GCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGAGAGAGATGGAGAGGAGAGAGAGAGAGAGAAAAAGGAGGAAGTGGTTTTTTTTTGAAATTGAAGGATCTATGATTTTCAGAATATTCTGGAATTTCAGAATTTTAGAATCTTGAAAAAGTTCCAAAAATTCGAAATTCCACAAAAAAGTTTTCAAACTAAAAAAAAAAAACGTTGCGAAGTGACGAATCGACACAGGAAGAATCTTATAATAAGTACCTCTTATCACTAGGAATTTTTGCGGAAAATGAGGAAAAATTAGTCTCCCAAAGGTTGGTGCTCTCTTCTCTTTTACAAACAATGAGTCGAAATGTGTAAATGTCGTTTGCTTCTTCCTCCGATTTTTTGATATTAAGCAAAGCACACACATTTGAAAAAAGGCGTTAAATCAGCAATAAACAAGAGCAAAAAGATGTTAGCATCGAATGGGCTCGAACCCACGCACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGT</canonical>
            <polymorphic>GGAGAGAGAGATGGAGAGGAGAGAGAGAGAGAGAAAAAGGAGGAAGTGGTTTTTTTTTGAAATTGAAGGATCTATGATTTTCAGAATATTCTGGAATTTCAGAATTTTAGAATCTTGAAAAAGTTCCAAAAATTCGAAATTCCACAAAAAAGTTTTCAAACTAAAAAAAAAAAACGTTGCGAAGTGACGAATCGACACAGGAAGAATCTTATAATAAGTACCTCTTATCACTAGGAATTTTTGCGGAAAATGAGGAAAAATTAGTCTCCCAAAGGTTGGTGCTCTCTTCTCTTTTACAAACAATGAGTCGAAATGTGTAAATGTCGTTTGCTTCTTCCTCCGATTTTTTGATATTAAGCAAAGCACACACATTTGAAAAAAGGCGTTAAATCAGCAATAAACAAGAGCAAAAAGATGTTAGCATCGAATGGGCTCGAACCCACGCACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCAYGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 493 6</canonical_bands>
                <polymorphic_bands>994 6</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>97 96 93 91 73 51 51 49 48 48 44 42 36 33 33 23 20 18 13 12 11 8 4 2 2 2</canonical_bands>
                <polymorphic_bands>99 97 96 93 73 51 51 49 48 48 44 42 36 33 33 23 20 18 13 12 11 4 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCTCAAAATCAAAATGTGTG</pcr_primer_p1>
		<pcr_primer_p2>ACAGTAAAATCGTGCTTTATGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGT</canonical_amplicon>
		<polymorphic_amplicon>ACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCAYGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16972</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>144319</contig_pos>
        <strand>+</strand>
        <context>GGAGGGGAGT[A/G]AGGGACTCGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGT</left_flank>
        <right_flank>AGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGG</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGATCTATGATTTTCAGAATATTCTGGAATTTCAGAATTTTAGAATCTTGAAAAAGTTCCAAAAATTCGAAATTCCACAAAAAAGTTTTCAAACTAAAAAAAAAAAACGTTGCGAAGTGACGAATCGACACAGGAAGAATCTTATAATAAGTACCTCTTATCACTAGGAATTTTTGCGGAAAATGAGGAAAAATTAGTCTCCCAAAGGTTGGTGCTCTCTTCTCTTTTACAAACAATGAGTCGAAATGTGTAAATGTCGTTTGCTTCTTCCTCCGATTTTTTGATATTAAGCAAAGCACACACATTTGAAAAAAGGCGTTAAATCAGCAATAAACAAGAGCAAAAAGATGTTAGCATCGAATGGGCTCGAACCCACGCACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATC</canonical>
            <polymorphic>AGGATCTATGATTTTCAGAATATTCTGGAATTTCAGAATTTTAGAATCTTGAAAAAGTTCCAAAAATTCGAAATTCCACAAAAAAGTTTTCAAACTAAAAAAAAAAAACGTTGCGAAGTGACGAATCGACACAGGAAGAATCTTATAATAAGTACCTCTTATCACTAGGAATTTTTGCGGAAAATGAGGAAAAATTAGTCTCCCAAAGGTTGGTGCTCTCTTCTCTTTTACAAACAATGAGTCGAAATGTGTAAATGTCGTTTGCTTCTTCCTCCGATTTTTTGATATTAAGCAAAGCACACACATTTGAAAAAAGGCGTTAAATCAGCAATAAACAAGAGCAAAAAGATGTTAGCATCGAATGGGCTCGAACCCACGCACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTRAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTCAAAATCAAAATGTGTG</pcr_primer_p1>
		<pcr_primer_p2>ACAGTAAAATCGTGCTTTATGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGT</canonical_amplicon>
		<polymorphic_amplicon>ACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTRAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16973</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>144340</contig_pos>
        <strand>+</strand>
        <context>CCGGAGAGTT[C/T]GTGTTGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTT</left_flank>
        <right_flank>GTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTGGAATTTCAGAATTTTAGAATCTTGAAAAAGTTCCAAAAATTCGAAATTCCACAAAAAAGTTTTCAAACTAAAAAAAAAAAACGTTGCGAAGTGACGAATCGACACAGGAAGAATCTTATAATAAGTACCTCTTATCACTAGGAATTTTTGCGGAAAATGAGGAAAAATTAGTCTCCCAAAGGTTGGTGCTCTCTTCTCTTTTACAAACAATGAGTCGAAATGTGTAAATGTCGTTTGCTTCTTCCTCCGATTTTTTGATATTAAGCAAAGCACACACATTTGAAAAAAGGCGTTAAATCAGCAATAAACAAGAGCAAAAAGATGTTAGCATCGAATGGGCTCGAACCCACGCACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTG</canonical>
            <polymorphic>ATTCTGGAATTTCAGAATTTTAGAATCTTGAAAAAGTTCCAAAAATTCGAAATTCCACAAAAAAGTTTTCAAACTAAAAAAAAAAAACGTTGCGAAGTGACGAATCGACACAGGAAGAATCTTATAATAAGTACCTCTTATCACTAGGAATTTTTGCGGAAAATGAGGAAAAATTAGTCTCCCAAAGGTTGGTGCTCTCTTCTCTTTTACAAACAATGAGTCGAAATGTGTAAATGTCGTTTGCTTCTTCCTCCGATTTTTTGATATTAAGCAAAGCACACACATTTGAAAAAAGGCGTTAAATCAGCAATAAACAAGAGCAAAAAGATGTTAGCATCGAATGGGCTCGAACCCACGCACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTYGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTCAAAATCAAAATGTGTG</pcr_primer_p1>
		<pcr_primer_p2>ACAGTAAAATCGTGCTTTATGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGT</canonical_amplicon>
		<polymorphic_amplicon>ACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTYGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16974</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>144365</contig_pos>
        <strand>+</strand>
        <context>TCTGAAATTT[A/T]WAGGCTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTT</left_flank>
        <right_flank>AAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGG</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTGAAAAAGTTCCAAAAATTCGAAATTCCACAAAAAAGTTTTCAAACTAAAAAAAAAAAACGTTGCGAAGTGACGAATCGACACAGGAAGAATCTTATAATAAGTACCTCTTATCACTAGGAATTTTTGCGGAAAATGAGGAAAAATTAGTCTCCCAAAGGTTGGTGCTCTCTTCTCTTTTACAAACAATGAGTCGAAATGTGTAAATGTCGTTTGCTTCTTCCTCCGATTTTTTGATATTAAGCAAAGCACACACATTTGAAAAAAGGCGTTAAATCAGCAATAAACAAGAGCAAAAAGATGTTAGCATCGAATGGGCTCGAACCCACGCACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACG</canonical>
            <polymorphic>TCTTGAAAAAGTTCCAAAAATTCGAAATTCCACAAAAAAGTTTTCAAACTAAAAAAAAAAAACGTTGCGAAGTGACGAATCGACACAGGAAGAATCTTATAATAAGTACCTCTTATCACTAGGAATTTTTGCGGAAAATGAGGAAAAATTAGTCTCCCAAAGGTTGGTGCTCTCTTCTCTTTTACAAACAATGAGTCGAAATGTGTAAATGTCGTTTGCTTCTTCCTCCGATTTTTTGATATTAAGCAAAGCACACACATTTGAAAAAAGGCGTTAAATCAGCAATAAACAAGAGCAAAAAGATGTTAGCATCGAATGGGCTCGAACCCACGCACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTWAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>343 242 146 141 84 32 12</canonical_bands>
                <polymorphic_bands>484 242 146 84 32 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCTCAAAATCAAAATGTGTG</pcr_primer_p1>
		<pcr_primer_p2>ACAGTAAAATCGTGCTTTATGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGT</canonical_amplicon>
		<polymorphic_amplicon>ACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTWAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16975</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>144366</contig_pos>
        <strand>+</strand>
        <context>CTGAAATTTW[A/T]AGGCTTTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTT</left_flank>
        <right_flank>AGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTGAAAAAGTTCCAAAAATTCGAAATTCCACAAAAAAGTTTTCAAACTAAAAAAAAAAAACGTTGCGAAGTGACGAATCGACACAGGAAGAATCTTATAATAAGTACCTCTTATCACTAGGAATTTTTGCGGAAAATGAGGAAAAATTAGTCTCCCAAAGGTTGGTGCTCTCTTCTCTTTTACAAACAATGAGTCGAAATGTGTAAATGTCGTTTGCTTCTTCCTCCGATTTTTTGATATTAAGCAAAGCACACACATTTGAAAAAAGGCGTTAAATCAGCAATAAACAAGAGCAAAAAGATGTTAGCATCGAATGGGCTCGAACCCACGCACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGT</canonical>
            <polymorphic>CTTGAAAAAGTTCCAAAAATTCGAAATTCCACAAAAAAGTTTTCAAACTAAAAAAAAAAAACGTTGCGAAGTGACGAATCGACACAGGAAGAATCTTATAATAAGTACCTCTTATCACTAGGAATTTTTGCGGAAAATGAGGAAAAATTAGTCTCCCAAAGGTTGGTGCTCTCTTCTCTTTTACAAACAATGAGTCGAAATGTGTAAATGTCGTTTGCTTCTTCCTCCGATTTTTTGATATTAAGCAAAGCACACACATTTGAAAAAAGGCGTTAAATCAGCAATAAACAAGAGCAAAAAGATGTTAGCATCGAATGGGCTCGAACCCACGCACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTWAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>343 241 146 141 84 32 13</canonical_bands>
                <polymorphic_bands>484 241 146 84 32 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCTCAAAATCAAAATGTGTG</pcr_primer_p1>
		<pcr_primer_p2>ACAGTAAAATCGTGCTTTATGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGT</canonical_amplicon>
		<polymorphic_amplicon>ACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTWAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16976</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>144393</contig_pos>
        <strand>+</strand>
        <context>CTGTAGTTTT[C/T]GTAGTTTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTT</left_flank>
        <right_flank>GTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCACAAAAAAGTTTTCAAACTAAAAAAAAAAAACGTTGCGAAGTGACGAATCGACACAGGAAGAATCTTATAATAAGTACCTCTTATCACTAGGAATTTTTGCGGAAAATGAGGAAAAATTAGTCTCCCAAAGGTTGGTGCTCTCTTCTCTTTTACAAACAATGAGTCGAAATGTGTAAATGTCGTTTGCTTCTTCCTCCGATTTTTTGATATTAAGCAAAGCACACACATTTGAAAAAAGGCGTTAAATCAGCAATAAACAAGAGCAAAAAGATGTTAGCATCGAATGGGCTCGAACCCACGCACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATT</canonical>
            <polymorphic>TCCACAAAAAAGTTTTCAAACTAAAAAAAAAAAACGTTGCGAAGTGACGAATCGACACAGGAAGAATCTTATAATAAGTACCTCTTATCACTAGGAATTTTTGCGGAAAATGAGGAAAAATTAGTCTCCCAAAGGTTGGTGCTCTCTTCTCTTTTACAAACAATGAGTCGAAATGTGTAAATGTCGTTTGCTTCTTCCTCCGATTTTTTGATATTAAGCAAAGCACACACATTTGAAAAAAGGCGTTAAATCAGCAATAAACAAGAGCAAAAAGATGTTAGCATCGAATGGGCTCGAACCCACGCACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTYGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTCAAAATCAAAATGTGTG</pcr_primer_p1>
		<pcr_primer_p2>ACAGTAAAATCGTGCTTTATGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGT</canonical_amplicon>
		<polymorphic_amplicon>ACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTYGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16977</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>144416</contig_pos>
        <strand>+</strand>
        <context>GTATCCATGG[C/T]TTGTAGCTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGG</left_flank>
        <right_flank>TTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAAAAAACGTTGCGAAGTGACGAATCGACACAGGAAGAATCTTATAATAAGTACCTCTTATCACTAGGAATTTTTGCGGAAAATGAGGAAAAATTAGTCTCCCAAAGGTTGGTGCTCTCTTCTCTTTTACAAACAATGAGTCGAAATGTGTAAATGTCGTTTGCTTCTTCCTCCGATTTTTTGATATTAAGCAAAGCACACACATTTGAAAAAAGGCGTTAAATCAGCAATAAACAAGAGCAAAAAGATGTTAGCATCGAATGGGCTCGAACCCACGCACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATA</canonical>
            <polymorphic>AAAAAAAAAAACGTTGCGAAGTGACGAATCGACACAGGAAGAATCTTATAATAAGTACCTCTTATCACTAGGAATTTTTGCGGAAAATGAGGAAAAATTAGTCTCCCAAAGGTTGGTGCTCTCTTCTCTTTTACAAACAATGAGTCGAAATGTGTAAATGTCGTTTGCTTCTTCCTCCGATTTTTTGATATTAAGCAAAGCACACACATTTGAAAAAAGGCGTTAAATCAGCAATAAACAAGAGCAAAAAGATGTTAGCATCGAATGGGCTCGAACCCACGCACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGYTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAGGCAATGATAAAGGATGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAAAAGTCAGAGAAGTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>ATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGYTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16978</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>145188</contig_pos>
        <strand>+</strand>
        <context>TTCTYCTAAA[A/T]TATCTGGTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTTCTAAA</left_flank>
        <right_flank>TATCTGGTGTCAAATGAGCACTTGAGTTCTAAAGGGGGTCTTGAGAGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTTCTAAAATATCTGGTGTCAAATGAGCACTTGAGTTCTAAAGGGGGTCTTGAGAGAAATTTCAGAAAATTCTAGAGACAAAAAGGTCGACTTTCTTCAATTTTCGATAAATTTCGGTTTTTAATTTTTAATCAGGGCATCACTGTATAGAAAAACAAGCTGAAAAACAACAACAAAAACTTTATTTTCAGAATTTTTTTCCAGATGACGTGCCGATGACATGCAACTCCTGAATTCTCTGAAAAAATCCTTTAATTTTGAATGAATTTCTTTAAAAATGTGATTGCTTTTGTCTGTAAAAACATGTATTTATTTTTAAATAAAACAAAAAAGCAGATCTGTAAAAATAACAAAAAACAAATTTCAAAAAATTAGCTCTCCCGCGAATTTTTTTTTCACATTTGAACTTGCCACGTTGCAGCACCACCCAACCTGAATTTTTCGTTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTTTGAAAAATTCTCTTTTTTC</canonical>
            <polymorphic>TGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTTCTAAAWTATCTGGTGTCAAATGAGCACTTGAGTTCTAAAGGGGGTCTTGAGAGAAATTTCAGAAAATTCTAGAGACAAAAAGGTCGACTTTCTTCAATTTTCGATAAATTTCGGTTTTTAATTTTTAATCAGGGCATCACTGTATAGAAAAACAAGCTGAAAAACAACAACAAAAACTTTATTTTCAGAATTTTTTTCCAGATGACGTGCCGATGACATGCAACTCCTGAATTCTCTGAAAAAATCCTTTAATTTTGAATGAATTTCTTTAAAAATGTGATTGCTTTTGTCTGTAAAAACATGTATTTATTTTTAAATAAAACAAAAAAGCAGATCTGTAAAAATAACAAAAAACAAATTTCAAAAAATTAGCTCTCCCGCGAATTTTTTTTTCACATTTGAACTTGCCACGTTGCAGCACCACCCAACCTGAATTTTTCGTTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTTTGAAAAATTCTCTTTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGTTTTAAAAAGTGCGTATT</pcr_primer_p1>
		<pcr_primer_p2>TTCTGAAATTTCTCTCAAGACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTTCTAAAATATCTGGTGTCAAATGAGCACTTGAGTTCTAAAGGGGGTCTTGAGAGAAATTTCAGAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTTCTAAAWTATCTGGTGTCAAATGAGCACTTGAGTTCTAAAGGGGGTCTTGAGAGAAATTTCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16979</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>145182</contig_pos>
        <strand>+</strand>
        <context>TCTTTTTTCT[C/T]CTAAAWTATC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCT</left_flank>
        <right_flank>CTAAAATATCTGGTGTCAAATGAGCACTTGAGTTCTAAAGGGGGTCTTGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTTCTAAAATATCTGGTGTCAAATGAGCACTTGAGTTCTAAAGGGGGTCTTGAGAGAAATTTCAGAAAATTCTAGAGACAAAAAGGTCGACTTTCTTCAATTTTCGATAAATTTCGGTTTTTAATTTTTAATCAGGGCATCACTGTATAGAAAAACAAGCTGAAAAACAACAACAAAAACTTTATTTTCAGAATTTTTTTCCAGATGACGTGCCGATGACATGCAACTCCTGAATTCTCTGAAAAAATCCTTTAATTTTGAATGAATTTCTTTAAAAATGTGATTGCTTTTGTCTGTAAAAACATGTATTTATTTTTAAATAAAACAAAAAAGCAGATCTGTAAAAATAACAAAAAACAAATTTCAAAAAATTAGCTCTCCCGCGAATTTTTTTTTCACATTTGAACTTGCCACGTTGCAGCACCACCCAACCTGAATTTTTCGTTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTTTGAAAAATTCTCT</canonical>
            <polymorphic>ATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTYCTAAAATATCTGGTGTCAAATGAGCACTTGAGTTCTAAAGGGGGTCTTGAGAGAAATTTCAGAAAATTCTAGAGACAAAAAGGTCGACTTTCTTCAATTTTCGATAAATTTCGGTTTTTAATTTTTAATCAGGGCATCACTGTATAGAAAAACAAGCTGAAAAACAACAACAAAAACTTTATTTTCAGAATTTTTTTCCAGATGACGTGCCGATGACATGCAACTCCTGAATTCTCTGAAAAAATCCTTTAATTTTGAATGAATTTCTTTAAAAATGTGATTGCTTTTGTCTGTAAAAACATGTATTTATTTTTAAATAAAACAAAAAAGCAGATCTGTAAAAATAACAAAAAACAAATTTCAAAAAATTAGCTCTCCCGCGAATTTTTTTTTCACATTTGAACTTGCCACGTTGCAGCACCACCCAACCTGAATTTTTCGTTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTTTGAAAAATTCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGTTTTAAAAAGTGCGTATT</pcr_primer_p1>
		<pcr_primer_p2>TTCTGAAATTTCTCTCAAGACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTTCTAAAATATCTGGTGTCAAATGAGCACTTGAGTTCTAAAGGGGGTCTTGAGAGAAATTTCAGAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTYCTAAAATATCTGGTGTCAAATGAGCACTTGAGTTCTAAAGGGGGTCTTGAGAGAAATTTCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16980</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>145072</contig_pos>
        <strand></strand>
        <context>ATACGGAAAA[C/A]ATTTGCAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAA</left_flank>
        <right_flank>ATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTTCTAAAATATCTGGTGTCAAATGAGCACTTGAGTTCTAAAGGGGGTCTTGAGAGAAATTTCAGAAAATTCTAGAGACAAAAAGGTCGACTTTCTTCAATTTTCGATAAATTTCGGTTTTTAATTTTTAATCAGGGCATCACTGTATAGAAAAACAAGCTGAAAAACAACAACAAAAACTTTATTTTCAGAATTTTTTTCCAGATGACGTGCCGATGACATGCAACTCCTGAATTCTCTGAAAAAATCCTTTAATTTTGAATGAATTTCTTTAAAAATGTGATTGCTTTTGTCTGTAAAAACATGTATTTATTTTTAAATAAAACAAAAAAGCAGATCTGTAAAAATAACAAAAAACAAATTTCAAAAAATTAGCTCTCCCGCGAATTTTTT</canonical>
            <polymorphic>GTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAAMATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTTCTAAAATATCTGGTGTCAAATGAGCACTTGAGTTCTAAAGGGGGTCTTGAGAGAAATTTCAGAAAATTCTAGAGACAAAAAGGTCGACTTTCTTCAATTTTCGATAAATTTCGGTTTTTAATTTTTAATCAGGGCATCACTGTATAGAAAAACAAGCTGAAAAACAACAACAAAAACTTTATTTTCAGAATTTTTTTCCAGATGACGTGCCGATGACATGCAACTCCTGAATTCTCTGAAAAAATCCTTTAATTTTGAATGAATTTCTTTAAAAATGTGATTGCTTTTGTCTGTAAAAACATGTATTTATTTTTAAATAAAACAAAAAAGCAGATCTGTAAAAATAACAAAAAACAAATTTCAAAAAATTAGCTCTCCCGCGAATTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGTTTTAAAAAGTGCGTATT</pcr_primer_p1>
		<pcr_primer_p2>TTCTGAAATTTCTCTCAAGACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTTCTAAAATATCTGGTGTCAAATGAGCACTTGAGTTCTAAAGGGGGTCTTGAGAGAAATTTCAGAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAAMATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTTCTAAAATATCTGGTGTCAAATGAGCACTTGAGTTCTAAAGGGGGTCTTGAGAGAAATTTCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16981</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>144891</contig_pos>
        <strand>+</strand>
        <context>CAGCAGAATA[A/T]TTATATTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATA</left_flank>
        <right_flank>TTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTTCTAAAATATCTGGTGTCAAATGAGCACTTGAGTTCTAAAGGGGGTCTTGAGAGAAATTTCAGAAAATTCTAGAGACAAAAAGGTCGACTTTCTTCAATTTTCGATAAATTTCGGTTTTTAATTTTTAATCAGGGCATCACTGTATAGAAAAACAAGCTGAAAAACAACAACAAAAACTTTATTTTCAGAATTTTTTTCCAGATGACGTG</canonical>
            <polymorphic>TTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAWTTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTTCTAAAATATCTGGTGTCAAATGAGCACTTGAGTTCTAAAGGGGGTCTTGAGAGAAATTTCAGAAAATTCTAGAGACAAAAAGGTCGACTTTCTTCAATTTTCGATAAATTTCGGTTTTTAATTTTTAATCAGGGCATCACTGTATAGAAAAACAAGCTGAAAAACAACAACAAAAACTTTATTTTCAGAATTTTTTTCCAGATGACGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>218 122 116 69 62 61 58 57 46 35 31 31 21 17 14 13 11 10 8</canonical_bands>
                <polymorphic_bands>218 122 116 69 66 62 61 58 57 46 31 21 17 14 13 11 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATTCGAATTTTCAACTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>AATACGCACTTTTTAAAACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATT</canonical_amplicon>
		<polymorphic_amplicon>AGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAWTTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16982</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>144867</contig_pos>
        <strand>+</strand>
        <context>TTGAACACGT[C/T]ACTTTTCGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGT</left_flank>
        <right_flank>ACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTTCTAAAATATCTGGTGTCAAATGAGCACTTGAGTTCTAAAGGGGGTCTTGAGAGAAATTTCAGAAAATTCTAGAGACAAAAAGGTCGACTTTCTTCAATTTTCGATAAATTTCGGTTTTTAATTTTTAATCAGGGCATCACTGTATAGAAAAACAAGCTGAAAAACAACAACAAAAACTTTATTTT</canonical>
            <polymorphic>GGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTYACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTTCTAAAATATCTGGTGTCAAATGAGCACTTGAGTTCTAAAGGGGGTCTTGAGAGAAATTTCAGAAAATTCTAGAGACAAAAAGGTCGACTTTCTTCAATTTTCGATAAATTTCGGTTTTTAATTTTTAATCAGGGCATCACTGTATAGAAAAACAAGCTGAAAAACAACAACAAAAACTTTATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATTCGAATTTTCAACTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>AATACGCACTTTTTAAAACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATT</canonical_amplicon>
		<polymorphic_amplicon>AGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTYACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16983</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>144843</contig_pos>
        <strand>+</strand>
        <context>TGTCRTTGAA[G/T]TTTCAGCTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAA</left_flank>
        <right_flank>TTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTTCTAAAATATCTGGTGTCAAATGAGCACTTGAGTTCTAAAGGGGGTCTTGAGAGAAATTTCAGAAAATTCTAGAGACAAAAAGGTCGACTTTCTTCAATTTTCGATAAATTTCGGTTTTTAATTTTTAATCAGGGCATCACTGTATAGAAAAACAAGCTGAA</canonical>
            <polymorphic>TTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAAKTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTTCTAAAATATCTGGTGTCAAATGAGCACTTGAGTTCTAAAGGGGGTCTTGAGAGAAATTTCAGAAAATTCTAGAGACAAAAAGGTCGACTTTCTTCAATTTTCGATAAATTTCGGTTTTTAATTTTTAATCAGGGCATCACTGTATAGAAAAACAAGCTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>316 307 116 80 58 55 42 16 10</canonical_bands>
                <polymorphic_bands>316 307 138 116 55 42 16 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>218 122 116 89 62 61 58 46 42 35 31 31 17 16 14 13 11 10 8</canonical_bands>
                <polymorphic_bands>218 122 116 89 72 62 61 46 42 35 31 31 17 16 13 11 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATTCGAATTTTCAACTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>AATACGCACTTTTTAAAACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATT</canonical_amplicon>
		<polymorphic_amplicon>AGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAAKTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16984</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>144837</contig_pos>
        <strand>+</strand>
        <context>ATTMTTTGTC[A/G]TTGAAKTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTC</left_flank>
        <right_flank>TTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTTCTAAAATATCTGGTGTCAAATGAGCACTTGAGTTCTAAAGGGGGTCTTGAGAGAAATTTCAGAAAATTCTAGAGACAAAAAGGTCGACTTTCTTCAATTTTCGATAAATTTCGGTTTTTAATTTTTAATCAGGGCATCACTGTATAGAAAAACAA</canonical>
            <polymorphic>TTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCRTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTTCTAAAATATCTGGTGTCAAATGAGCACTTGAGTTCTAAAGGGGGTCTTGAGAGAAATTTCAGAAAATTCTAGAGACAAAAAGGTCGACTTTCTTCAATTTTCGATAAATTTCGGTTTTTAATTTTTAATCAGGGCATCACTGTATAGAAAAACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATTCGAATTTTCAACTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>AATACGCACTTTTTAAAACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATT</canonical_amplicon>
		<polymorphic_amplicon>AGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCRTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16985</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>144830</contig_pos>
        <strand>+</strand>
        <context>TCWGTCCATT[A/C]TTTGTCRTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATT</left_flank>
        <right_flank>TTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTTCTAAAATATCTGGTGTCAAATGAGCACTTGAGTTCTAAAGGGGGTCTTGAGAGAAATTTCAGAAAATTCTAGAGACAAAAAGGTCGACTTTCTTCAATTTTCGATAAATTTCGGTTTTTAATTTTTAATCAGGGCATCACTGTATAGA</canonical>
            <polymorphic>CGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTMTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTTCTAAAATATCTGGTGTCAAATGAGCACTTGAGTTCTAAAGGGGGTCTTGAGAGAAATTTCAGAAAATTCTAGAGACAAAAAGGTCGACTTTCTTCAATTTTCGATAAATTTCGGTTTTTAATTTTTAATCAGGGCATCACTGTATAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATTCGAATTTTCAACTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>AATACGCACTTTTTAAAACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATT</canonical_amplicon>
		<polymorphic_amplicon>AGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTMTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16986</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>144822</contig_pos>
        <strand>+</strand>
        <context>GCTCGATCTC[A/T]GTCCATTMTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTC</left_flank>
        <right_flank>GTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTTCTAAAATATCTGGTGTCAAATGAGCACTTGAGTTCTAAAGGGGGTCTTGAGAGAAATTTCAGAAAATTCTAGAGACAAAAAGGTCGACTTTCTTCAATTTTCGATAAATTTCGGTTTTTAATTTTTAATCAGGGCATCAC</canonical>
            <polymorphic>GACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCWGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTTCTAAAATATCTGGTGTCAAATGAGCACTTGAGTTCTAAAGGGGGTCTTGAGAGAAATTTCAGAAAATTCTAGAGACAAAAAGGTCGACTTTCTTCAATTTTCGATAAATTTCGGTTTTTAATTTTTAATCAGGGCATCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTATTCAGCGAAAATCATTA</pcr_primer_p1>
		<pcr_primer_p2>GAAATAATTGTCGAATTTTCCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTC</canonical_amplicon>
		<polymorphic_amplicon>TTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCWGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16987</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>144810</contig_pos>
        <strand>+</strand>
        <context>GCAAAAACCA[A/G]TGCTCGATCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCA</left_flank>
        <right_flank>TGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTTCTAAAATATCTGGTGTCAAATGAGCACTTGAGTTCTAAAGGGGGTCTTGAGAGAAATTTCAGAAAATTCTAGAGACAAAAAGGTCGACTTTCTTCAATTTTCGATAAATTTCGGTTTTTAATTTTTAA</canonical>
            <polymorphic>AGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCARTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTTCTAAAATATCTGGTGTCAAATGAGCACTTGAGTTCTAAAGGGGGTCTTGAGAGAAATTTCAGAAAATTCTAGAGACAAAAAGGTCGACTTTCTTCAATTTTCGATAAATTTCGGTTTTTAATTTTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>504 352 102 42</canonical_bands>
                <polymorphic_bands>856 102 42</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>504 352 102 42</canonical_bands>
                <polymorphic_bands>856 102 42</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>153 102 97 93 86 64 52 51 51 49 44 34 33 31 23 20 11 6</canonical_bands>
                <polymorphic_bands>153 103 102 97 93 86 64 51 49 44 34 33 31 23 20 11 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTATTCAGCGAAAATCATTA</pcr_primer_p1>
		<pcr_primer_p2>GAAATAATTGTCGAATTTTCCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTC</canonical_amplicon>
		<polymorphic_amplicon>TTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCARTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16988</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>144717</contig_pos>
        <strand>+</strand>
        <context>TTAAAGAATY[A/T]TCACTGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATC</left_flank>
        <right_flank>TCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTTCTAAAATATCTGGTGTCAAATGAGCACTTGAGTTC</canonical>
            <polymorphic>TGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCWTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTTCTAAAATATCTGGTGTCAAATGAGCACTTGAGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTCAGAGAACAGCACGTAGT</pcr_primer_p1>
		<pcr_primer_p2>TATTCTGCTGAAAATCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATA</canonical_amplicon>
		<polymorphic_amplicon>AACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCWTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16989</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>144716</contig_pos>
        <strand>+</strand>
        <context>ATTAAAGAAT[C/T]WTCACTGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAAT</left_flank>
        <right_flank>TTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTTCTAAAATATCTGGTGTCAAATGAGCACTTGAGTT</canonical>
            <polymorphic>GTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATYTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTTCTAAAATATCTGGTGTCAAATGAGCACTTGAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>439 389 107 65</canonical_bands>
                <polymorphic_bands>454 439 107</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>496 439 65</canonical_bands>
                <polymorphic_bands>561 439</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTCAGAGAACAGCACGTAGT</pcr_primer_p1>
		<pcr_primer_p2>TATTCTGCTGAAAATCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATA</canonical_amplicon>
		<polymorphic_amplicon>AACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATYTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16990</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>176080</contig_pos>
        <strand></strand>
        <context>GTCATTTTTG[T/G]GGTGTGCAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AAAATACTCTTATCAAACTCTGCCGATTAGACAATATAATGTCATTTTTG</left_flank>
        <right_flank>GGTGTGCAGTGCAGAATGCTATAGTATTAGAAATATTCACGGCTCATTGA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCCACGTGGCAAGCTCCTCATGAATGTTGACCTATTTTATTCAAAAAATGATGAATGTTGACCTATTTTATTCAAAAAATGTATAAATTTTAAGCCAATAACATGTTTTTTTTTCGAAAAAAAAATATATAAGCGGAACACCATCAGGCACTTTATTTGCACACCTGTTTGCCCAGGGCGATAGGTTTTTCGATATACCTTTCGCTCCAAAAATGGGGGGGAAACGAGAGAGATAGAGAGGGGTTAGAGATACAGGCATCTACACTCTCTCCGGTCGATGATTCTAGGCCATTGGAGAGGTTTCACACATTCTTCACTTGGGGTTGTGAGATAAGAAATTTCTTAAGGAACAATAGGGAATTTTTTGAAAAAAAAATAAATTTAGGCCACAATTTTCGGGGGGAAAACGAAAGCTAAATAGCGAAAGTTGGGTCTCGATTTCTGGAAAAAATACTCTTATCAAACTCTGCCGATTAGACAATATAATGTCATTTTTGTGGTGTGCAGTGCAGAATGCTATAGTATTAGAAATATTCACGGCTCATTGAGCACCGGGCGCGAGATTCCAGATTCCAGGTCAATAAGATTCTGCTTCGCTGGGTTCTACTTGCGCTTCATTAAGAAATCGTAACGTGGCAAAGTTTTAGGTCATTCACCTTCTCATTAGAGCGCAACAGCATCCTGTGCGATGGCGGAAGCTATGGAAAAATTAGAAAATCAAGAGGCTATGAATGTCAAAAATGGACATAACAAATCGGCACAATTTGATAGGGAGAAAGAACAGGAATTTTCGGTTCAGCGCGGCACACAAAGCGGACACACTGAACAGCGGAAACAGCCAGCAGCAGCATGTATTTGCAAGAGCTCCAAGAATCGCCAACATCAGAGCTAGATAATCGGAACAGAGAGTGAACGGAGACCCGACTGGCGGGGAGGTCGCTGACGGAGACTCAATGGACGAAACATGTGTGTGAATAGAAGAGGTGTTAGAGAAACTT</canonical>
            <polymorphic>AAGCCACGTGGCAAGCTCCTCATGAATGTTGACCTATTTTATTCAAAAAATGATGAATGTTGACCTATTTTATTCAAAAAATGTATAAATTTTAAGCCAATAACATGTTTTTTTTTCGAAAAAAAAATATATAAGCGGAACACCATCAGGCACTTTATTTGCACACCTGTTTGCCCAGGGCGATAGGTTTTTCGATATACCTTTCGCTCCAAAAATGGGGGGGAAACGAGAGAGATAGAGAGGGGTTAGAGATACAGGCATCTACACTCTCTCCGGTCGATGATTCTAGGCCATTGGAGAGGTTTCACACATTCTTCACTTGGGGTTGTGAGATAAGAAATTTCTTAAGGAACAATAGGGAATTTTTTGAAAAAAAAATAAATTTAGGCCACAATTTTCGGGGGGAAAACGAAAGCTAAATAGCGAAAGTTGGGTCTCGATTTCTGGAAAAAATACTCTTATCAAACTCTGCCGATTAGACAATATAATGTCATTTTTGKGGTGTGCAGTGCAGAATGCTATAGTATTAGAAATATTCACGGCTCATTGAGCACCGGGCGCGAGATTCCAGATTCCAGGTCAATAAGATTCTGCTTCGCTGGGTTCTACTTGCGCTTCATTAAGAAATCGTAACGTGGCAAAGTTTTAGGTCATTCACCTTCTCATTAGAGCGCAACAGCATCCTGTGCGATGGCGGAAGCTATGGAAAAATTAGAAAATCAAGAGGCTATGAATGTCAAAAATGGACATAACAAATCGGCACAATTTGATAGGGAGAAAGAACAGGAATTTTCGGTTCAGCGCGGCACACAAAGCGGACACACTGAACAGCGGAAACAGCCAGCAGCAGCATGTATTTGCAAGAGCTCCAAGAATCGCCAACATCAGAGCTAGATAATCGGAACAGAGAGTGAACGGAGACCCGACTGGCGGGGAGGTCGCTGACGGAGACTCAATGGACGAAACATGTGTGTGAATAGAAGAGGTGTTAGAGAAACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>132 110 101 90 84 74 61 58 46 41 31 28 20 14 13 12 12 11 11 10 9 6 5 4 3 2 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>132 113 101 90 84 74 61 58 46 41 31 28 20 14 13 12 12 11 11 10 9 6 5 4 2 2 2 2 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>496 474 30</canonical_bands>
                <polymorphic_bands>970 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTAAGGAACAATAGGGAATTT</pcr_primer_p1>
		<pcr_primer_p2>AGAATCTTATTGACCTGGAATCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTAAGGAACAATAGGGAATTTTTTGAAAAAAAAATAAATTTAGGCCACAATTTTCGGGGGGAAAACGAAAGCTAAATAGCGAAAGTTGGGTCTCGATTTCTGGAAAAAATACTCTTATCAAACTCTGCCGATTAGACAATATAATGTCATTTTTGTGGTGTGCAGTGCAGAATGCTATAGTATTAGAAATATTCACGGCTCATTGAGCACCGGGCGCGAGATTCCAGATTCCAGGTCAATAAGATTCT</canonical_amplicon>
		<polymorphic_amplicon>TCTTAAGGAACAATAGGGAATTTTTTGAAAAAAAAATAAATTTAGGCCACAATTTTCGGGGGGAAAACGAAAGCTAAATAGCGAAAGTTGGGTCTCGATTTCTGGAAAAAATACTCTTATCAAACTCTGCCGATTAGACAATATAATGTCATTTTTGKGGTGTGCAGTGCAGAATGCTATAGTATTAGAAATATTCACGGCTCATTGAGCACCGGGCGCGAGATTCCAGATTCCAGGTCAATAAGATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16992</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>179288</contig_pos>
        <strand>+</strand>
        <context>GGGTGTKGAG[C/T]TAGACAAACC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACAATACCGAACTTTTCACATTTTTTTAAAACAACATTCGGGTGTTGAG</left_flank>
        <right_flank>TAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGGATTTGAAGCCTTGCAAATTCTCGACATCCTGGAACCAACACAAATAAGTCATTTCCTTCCTGATGGCATTCGTGAAGCAGTTTAATAACTGAGGTTTCCTCCGAGTATACCAGAAATAGGTAGGTGTACGATGTCACTGGAATAGGCTTTCCGCAGACTAAAATATTTTTCGGCCCTCTCTCATAACCGTCTATAAATAATTATCTTCATTTTTAAGGCCTTTTTTGAGTCAAAAACCCATTTTCTTACCTTTTTTATAGTATCCATTGGCATACATGAAGACCCAATATTTTTTTATTTCGTTAAAAACCTTTTTTTCAAATATTTAGGTCTTTAAAAATCTTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTTCCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTTAAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGAGCCAAAAGAGAGAGCATAATAATCACAGAAGAATTGACTTTTTTGATCCAGGAAATGGCAAAAAATAGAGAAAAAAAACTGAATGTGTATAGATGGCAAGTAAGAGAGACATTATGGAAAATCGAGAGAATTAGAGAAAAAAAAGTGAAATAATCGAAATATTAATCAACTCCTGAGAAGATTTCCGAGTTTTCAATAGCCGTTAACAGTTTTGATTTGAGTTCTTTGAATGTTGTGTAAGGCGGCAGGTCGAGGCGATTGAAGCTGAAAAAAGGTAAAATTTAAATTGTTTCGTAATGCAATTGCGCTTTATTGAGAGTCTACTTACCATGTATGCGCTCTTGGCAACATATCGGCACTTCCCCAACGCTCGATCGTAAACTTTTGAAGTCCATTCGATCCATACAACTCTCGGAAT</canonical>
            <polymorphic>GACGGATTTGAAGCCTTGCAAATTCTCGACATCCTGGAACCAACACAAATAAGTCATTTCCTTCCTGATGGCATTCGTGAAGCAGTTTAATAACTGAGGTTTCCTCCGAGTATACCAGAAATAGGTAGGTGTACGATGTCACTGGAATAGGCTTTCCGCAGACTAAAATATTTTTCGGCCCTCTCTCATAACCGTCTATAAATAATTATCTTCATTTTTAAGGCCTTTTTTGAGTCAAAAACCCATTTTCTTACCTTTTTTATAGTATCCATTGGCATACATGAAGACCCAATATTTTTTTATTTCGTTAAAAACCTTTTTTTCAAATATTTAGGTCTTTAAAAATCTTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTTCCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTTAAAACAACATTCGGGTGTTGAGYTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGAGCCAAAAGAGAGAGCATAATAATCACAGAAGAATTGACTTTTTTGATCCAGGAAATGGCAAAAAATAGAGAAAAAAAACTGAATGTGTATAGATGGCAAGTAAGAGAGACATTATGGAAAATCGAGAGAATTAGAGAAAAAAAAGTGAAATAATCGAAATATTAATCAACTCCTGAGAAGATTTCCGAGTTTTCAATAGCCGTTAACAGTTTTGATTTGAGTTCTTTGAATGTTGTGTAAGGCGGCAGGTCGAGGCGATTGAAGCTGAAAAAAGGTAAAATTTAAATTGTTTCGTAATGCAATTGCGCTTTATTGAGAGTCTACTTACCATGTATGCGCTCTTGGCAACATATCGGCACTTCCCCAACGCTCGATCGTAAACTTTTGAAGTCCATTCGATCCATACAACTCTCGGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAACGAACAATACCGAACTTT</pcr_primer_p1>
		<pcr_primer_p2>TGTCTCTCTTACTTGCCATCTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAACGAACAATACCGAACTTTTCACATTTTTTTAAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGAGCCAAAAGAGAGAGCATAATAATCACAGAAGAATTGACTTTTTTGATCCAGGAAATGGCAAAAAATAGAGAAAAAAAACTGAATGTGTATAGATGGCAAGTAAGAGAGACA</canonical_amplicon>
		<polymorphic_amplicon>TTAACGAACAATACCGAACTTTTCACATTTTTTTAAAACAACATTCGGGTGTTGAGYTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGAGCCAAAAGAGAGAGCATAATAATCACAGAAGAATTGACTTTTTTGATCCAGGAAATGGCAAAAAATAGAGAAAAAAAACTGAATGTGTATAGATGGCAAGTAAGAGAGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16993</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>179284</contig_pos>
        <strand>+</strand>
        <context>ATTCGGGTGT[G/T]GAGYTAGACA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACGAACAATACCGAACTTTTCACATTTTTTTAAAACAACATTCGGGTGT</left_flank>
        <right_flank>GAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGGACGGATTTGAAGCCTTGCAAATTCTCGACATCCTGGAACCAACACAAATAAGTCATTTCCTTCCTGATGGCATTCGTGAAGCAGTTTAATAACTGAGGTTTCCTCCGAGTATACCAGAAATAGGTAGGTGTACGATGTCACTGGAATAGGCTTTCCGCAGACTAAAATATTTTTCGGCCCTCTCTCATAACCGTCTATAAATAATTATCTTCATTTTTAAGGCCTTTTTTGAGTCAAAAACCCATTTTCTTACCTTTTTTATAGTATCCATTGGCATACATGAAGACCCAATATTTTTTTATTTCGTTAAAAACCTTTTTTTCAAATATTTAGGTCTTTAAAAATCTTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTTCCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTTAAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGAGCCAAAAGAGAGAGCATAATAATCACAGAAGAATTGACTTTTTTGATCCAGGAAATGGCAAAAAATAGAGAAAAAAAACTGAATGTGTATAGATGGCAAGTAAGAGAGACATTATGGAAAATCGAGAGAATTAGAGAAAAAAAAGTGAAATAATCGAAATATTAATCAACTCCTGAGAAGATTTCCGAGTTTTCAATAGCCGTTAACAGTTTTGATTTGAGTTCTTTGAATGTTGTGTAAGGCGGCAGGTCGAGGCGATTGAAGCTGAAAAAAGGTAAAATTTAAATTGTTTCGTAATGCAATTGCGCTTTATTGAGAGTCTACTTACCATGTATGCGCTCTTGGCAACATATCGGCACTTCCCCAACGCTCGATCGTAAACTTTTGAAGTCCATTCGATCCATACAACTCTCG</canonical>
            <polymorphic>CAAGGACGGATTTGAAGCCTTGCAAATTCTCGACATCCTGGAACCAACACAAATAAGTCATTTCCTTCCTGATGGCATTCGTGAAGCAGTTTAATAACTGAGGTTTCCTCCGAGTATACCAGAAATAGGTAGGTGTACGATGTCACTGGAATAGGCTTTCCGCAGACTAAAATATTTTTCGGCCCTCTCTCATAACCGTCTATAAATAATTATCTTCATTTTTAAGGCCTTTTTTGAGTCAAAAACCCATTTTCTTACCTTTTTTATAGTATCCATTGGCATACATGAAGACCCAATATTTTTTTATTTCGTTAAAAACCTTTTTTTCAAATATTTAGGTCTTTAAAAATCTTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTTCCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTTAAAACAACATTCGGGTGTKGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGAGCCAAAAGAGAGAGCATAATAATCACAGAAGAATTGACTTTTTTGATCCAGGAAATGGCAAAAAATAGAGAAAAAAAACTGAATGTGTATAGATGGCAAGTAAGAGAGACATTATGGAAAATCGAGAGAATTAGAGAAAAAAAAGTGAAATAATCGAAATATTAATCAACTCCTGAGAAGATTTCCGAGTTTTCAATAGCCGTTAACAGTTTTGATTTGAGTTCTTTGAATGTTGTGTAAGGCGGCAGGTCGAGGCGATTGAAGCTGAAAAAAGGTAAAATTTAAATTGTTTCGTAATGCAATTGCGCTTTATTGAGAGTCTACTTACCATGTATGCGCTCTTGGCAACATATCGGCACTTCCCCAACGCTCGATCGTAAACTTTTGAAGTCCATTCGATCCATACAACTCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAACGAACAATACCGAACTTT</pcr_primer_p1>
		<pcr_primer_p2>TGTCTCTCTTACTTGCCATCTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAACGAACAATACCGAACTTTTCACATTTTTTTAAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGAGCCAAAAGAGAGAGCATAATAATCACAGAAGAATTGACTTTTTTGATCCAGGAAATGGCAAAAAATAGAGAAAAAAAACTGAATGTGTATAGATGGCAAGTAAGAGAGACA</canonical_amplicon>
		<polymorphic_amplicon>TTAACGAACAATACCGAACTTTTCACATTTTTTTAAAACAACATTCGGGTGTKGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGAGCCAAAAGAGAGAGCATAATAATCACAGAAGAATTGACTTTTTTGATCCAGGAAATGGCAAAAAATAGAGAAAAAAAACTGAATGTGTATAGATGGCAAGTAAGAGAGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16994</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>179266</contig_pos>
        <strand></strand>
        <context>ACATYTTTTT[A/C]AAACMACATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTT</left_flank>
        <right_flank>AAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGGCGTTGTGAATGAACCAAGGACGGATTTGAAGCCTTGCAAATTCTCGACATCCTGGAACCAACACAAATAAGTCATTTCCTTCCTGATGGCATTCGTGAAGCAGTTTAATAACTGAGGTTTCCTCCGAGTATACCAGAAATAGGTAGGTGTACGATGTCACTGGAATAGGCTTTCCGCAGACTAAAATATTTTTCGGCCCTCTCTCATAACCGTCTATAAATAATTATCTTCATTTTTAAGGCCTTTTTTGAGTCAAAAACCCATTTTCTTACCTTTTTTATAGTATCCATTGGCATACATGAAGACCCAATATTTTTTTATTTCGTTAAAAACCTTTTTTTCAAATATTTAGGTCTTTAAAAATCTTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTTCCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTTAAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGAGCCAAAAGAGAGAGCATAATAATCACAGAAGAATTGACTTTTTTGATCCAGGAAATGGCAAAAAATAGAGAAAAAAAACTGAATGTGTATAGATGGCAAGTAAGAGAGACATTATGGAAAATCGAGAGAATTAGAGAAAAAAAAGTGAAATAATCGAAATATTAATCAACTCCTGAGAAGATTTCCGAGTTTTCAATAGCCGTTAACAGTTTTGATTTGAGTTCTTTGAATGTTGTGTAAGGCGGCAGGTCGAGGCGATTGAAGCTGAAAAAAGGTAAAATTTAAATTGTTTCGTAATGCAATTGCGCTTTATTGAGAGTCTACTTACCATGTATGCGCTCTTGGCAACATATCGGCACTTCCCCAACGCTCGATCGTAAACTTTTGAAGTCCATT</canonical>
            <polymorphic>AAGGCGTTGTGAATGAACCAAGGACGGATTTGAAGCCTTGCAAATTCTCGACATCCTGGAACCAACACAAATAAGTCATTTCCTTCCTGATGGCATTCGTGAAGCAGTTTAATAACTGAGGTTTCCTCCGAGTATACCAGAAATAGGTAGGTGTACGATGTCACTGGAATAGGCTTTCCGCAGACTAAAATATTTTTCGGCCCTCTCTCATAACCGTCTATAAATAATTATCTTCATTTTTAAGGCCTTTTTTGAGTCAAAAACCCATTTTCTTACCTTTTTTATAGTATCCATTGGCATACATGAAGACCCAATATTTTTTTATTTCGTTAAAAACCTTTTTTTCAAATATTTAGGTCTTTAAAAATCTTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTTCCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTTMAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGAGCCAAAAGAGAGAGCATAATAATCACAGAAGAATTGACTTTTTTGATCCAGGAAATGGCAAAAAATAGAGAAAAAAAACTGAATGTGTATAGATGGCAAGTAAGAGAGACATTATGGAAAATCGAGAGAATTAGAGAAAAAAAAGTGAAATAATCGAAATATTAATCAACTCCTGAGAAGATTTCCGAGTTTTCAATAGCCGTTAACAGTTTTGATTTGAGTTCTTTGAATGTTGTGTAAGGCGGCAGGTCGAGGCGATTGAAGCTGAAAAAAGGTAAAATTTAAATTGTTTCGTAATGCAATTGCGCTTTATTGAGAGTCTACTTACCATGTATGCGCTCTTGGCAACATATCGGCACTTCCCCAACGCTCGATCGTAAACTTTTGAAGTCCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>388 362 137 113</canonical_bands>
                <polymorphic_bands>525 362 113</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>268 131 114 109 105 90 79 41 32 31</canonical_bands>
                <polymorphic_bands>300 131 114 109 105 90 79 41 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACACCGCTTGCATTTAAC</pcr_primer_p1>
		<pcr_primer_p2>GCCATCTATACACATTCAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTTAAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGAGCCAAAAGAGAGAGCATAATAATCACAGAAGAATTGACTTTTTTGATCCAGGAAATGGCAAAAAATAGAGAAAAAAAACTGAATGTGTATAGATGGC</canonical_amplicon>
		<polymorphic_amplicon>ATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTTMAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGAGCCAAAAGAGAGAGCATAATAATCACAGAAGAATTGACTTTTTTGATCCAGGAAATGGCAAAAAATAGAGAAAAAAAACTGAATGTGTATAGATGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16995</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>179255</contig_pos>
        <strand></strand>
        <context>CCGAACTTTT[C/T]ACATYTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTTTT</left_flank>
        <right_flank>ACATTTTTTTAAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACAC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAGATGTAGAAGGCGTTGTGAATGAACCAAGGACGGATTTGAAGCCTTGCAAATTCTCGACATCCTGGAACCAACACAAATAAGTCATTTCCTTCCTGATGGCATTCGTGAAGCAGTTTAATAACTGAGGTTTCCTCCGAGTATACCAGAAATAGGTAGGTGTACGATGTCACTGGAATAGGCTTTCCGCAGACTAAAATATTTTTCGGCCCTCTCTCATAACCGTCTATAAATAATTATCTTCATTTTTAAGGCCTTTTTTGAGTCAAAAACCCATTTTCTTACCTTTTTTATAGTATCCATTGGCATACATGAAGACCCAATATTTTTTTATTTCGTTAAAAACCTTTTTTTCAAATATTTAGGTCTTTAAAAATCTTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTTCCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTTAAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGAGCCAAAAGAGAGAGCATAATAATCACAGAAGAATTGACTTTTTTGATCCAGGAAATGGCAAAAAATAGAGAAAAAAAACTGAATGTGTATAGATGGCAAGTAAGAGAGACATTATGGAAAATCGAGAGAATTAGAGAAAAAAAAGTGAAATAATCGAAATATTAATCAACTCCTGAGAAGATTTCCGAGTTTTCAATAGCCGTTAACAGTTTTGATTTGAGTTCTTTGAATGTTGTGTAAGGCGGCAGGTCGAGGCGATTGAAGCTGAAAAAAGGTAAAATTTAAATTGTTTCGTAATGCAATTGCGCTTTATTGAGAGTCTACTTACCATGTATGCGCTCTTGGCAACATATCGGCACTTCCCCAACGCTCGATCGTAAACTTT</canonical>
            <polymorphic>TGGAGATGTAGAAGGCGTTGTGAATGAACCAAGGACGGATTTGAAGCCTTGCAAATTCTCGACATCCTGGAACCAACACAAATAAGTCATTTCCTTCCTGATGGCATTCGTGAAGCAGTTTAATAACTGAGGTTTCCTCCGAGTATACCAGAAATAGGTAGGTGTACGATGTCACTGGAATAGGCTTTCCGCAGACTAAAATATTTTTCGGCCCTCTCTCATAACCGTCTATAAATAATTATCTTCATTTTTAAGGCCTTTTTTGAGTCAAAAACCCATTTTCTTACCTTTTTTATAGTATCCATTGGCATACATGAAGACCCAATATTTTTTTATTTCGTTAAAAACCTTTTTTTCAAATATTTAGGTCTTTAAAAATCTTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTTCCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTTTTYACATTTTTTTAAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGAGCCAAAAGAGAGAGCATAATAATCACAGAAGAATTGACTTTTTTGATCCAGGAAATGGCAAAAAATAGAGAAAAAAAACTGAATGTGTATAGATGGCAAGTAAGAGAGACATTATGGAAAATCGAGAGAATTAGAGAAAAAAAAGTGAAATAATCGAAATATTAATCAACTCCTGAGAAGATTTCCGAGTTTTCAATAGCCGTTAACAGTTTTGATTTGAGTTCTTTGAATGTTGTGTAAGGCGGCAGGTCGAGGCGATTGAAGCTGAAAAAAGGTAAAATTTAAATTGTTTCGTAATGCAATTGCGCTTTATTGAGAGTCTACTTACCATGTATGCGCTCTTGGCAACATATCGGCACTTCCCCAACGCTCGATCGTAAACTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>256 121 91 90 62 60 56 52 35 34 27 26 22 22 18 10 10 6 2</canonical_bands>
                <polymorphic_bands>256 121 91 90 62 61 60 56 52 34 27 22 22 18 10 10 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATTTTATTCTGAAGCGATTTT</pcr_primer_p1>
		<pcr_primer_p2>TCCTTGACATCTGTTTTATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>TTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTTCCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTTAAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGA</canonical_amplicon>
		<polymorphic_amplicon>TTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTTCCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTTTTYACATTTTTTTAAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16996</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>179216</contig_pos>
        <strand>+</strand>
        <context>TGTGCACCGA[C/T]ATACACCGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGACCTCCCGTACTGTAGTGCATTTCCGCGTAGCGGTGCATGTGCACCGA</left_flank>
        <right_flank>ATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACGATGAATATCAATGCATCGATTGTTCAGAGCTTTGTTGGAGATGTAGAAGGCGTTGTGAATGAACCAAGGACGGATTTGAAGCCTTGCAAATTCTCGACATCCTGGAACCAACACAAATAAGTCATTTCCTTCCTGATGGCATTCGTGAAGCAGTTTAATAACTGAGGTTTCCTCCGAGTATACCAGAAATAGGTAGGTGTACGATGTCACTGGAATAGGCTTTCCGCAGACTAAAATATTTTTCGGCCCTCTCTCATAACCGTCTATAAATAATTATCTTCATTTTTAAGGCCTTTTTTGAGTCAAAAACCCATTTTCTTACCTTTTTTATAGTATCCATTGGCATACATGAAGACCCAATATTTTTTTATTTCGTTAAAAACCTTTTTTTCAAATATTTAGGTCTTTAAAAATCTTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTTCCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTTAAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGAGCCAAAAGAGAGAGCATAATAATCACAGAAGAATTGACTTTTTTGATCCAGGAAATGGCAAAAAATAGAGAAAAAAAACTGAATGTGTATAGATGGCAAGTAAGAGAGACATTATGGAAAATCGAGAGAATTAGAGAAAAAAAAGTGAAATAATCGAAATATTAATCAACTCCTGAGAAGATTTCCGAGTTTTCAATAGCCGTTAACAGTTTTGATTTGAGTTCTTTGAATGTTGTGTAAGGCGGCAGGTCGAGGCGATTGAAGCTGAAAAAAGGTAAAATTTAAATTGTTTCGTAATGCAATTGCGCTTTATTGAGAGTCTACTTACCATGTATGCGCTCTTGGC</canonical>
            <polymorphic>TACGATGAATATCAATGCATCGATTGTTCAGAGCTTTGTTGGAGATGTAGAAGGCGTTGTGAATGAACCAAGGACGGATTTGAAGCCTTGCAAATTCTCGACATCCTGGAACCAACACAAATAAGTCATTTCCTTCCTGATGGCATTCGTGAAGCAGTTTAATAACTGAGGTTTCCTCCGAGTATACCAGAAATAGGTAGGTGTACGATGTCACTGGAATAGGCTTTCCGCAGACTAAAATATTTTTCGGCCCTCTCTCATAACCGTCTATAAATAATTATCTTCATTTTTAAGGCCTTTTTTGAGTCAAAAACCCATTTTCTTACCTTTTTTATAGTATCCATTGGCATACATGAAGACCCAATATTTTTTTATTTCGTTAAAAACCTTTTTTTCAAATATTTAGGTCTTTAAAAATCTTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTTCCGCGTAGCGGTGCATGTGCACCGAYATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTTAAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGAGCCAAAAGAGAGAGCATAATAATCACAGAAGAATTGACTTTTTTGATCCAGGAAATGGCAAAAAATAGAGAAAAAAAACTGAATGTGTATAGATGGCAAGTAAGAGAGACATTATGGAAAATCGAGAGAATTAGAGAAAAAAAAGTGAAATAATCGAAATATTAATCAACTCCTGAGAAGATTTCCGAGTTTTCAATAGCCGTTAACAGTTTTGATTTGAGTTCTTTGAATGTTGTGTAAGGCGGCAGGTCGAGGCGATTGAAGCTGAAAAAAGGTAAAATTTAAATTGTTTCGTAATGCAATTGCGCTTTATTGAGAGTCTACTTACCATGTATGCGCTCTTGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTTTATTCTGAAGCGATTTT</pcr_primer_p1>
		<pcr_primer_p2>TCCTTGACATCTGTTTTATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>TTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTTCCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTTAAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGA</canonical_amplicon>
		<polymorphic_amplicon>TTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTTCCGCGTAGCGGTGCATGTGCACCGAYATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTTAAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16997</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>179191</contig_pos>
        <strand>+</strand>
        <context>TAGTGYATTT[C/T]CGCGTAGCGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTT</left_flank>
        <right_flank>CGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCGGAAGTCCTCCAACGAAGACGGTACGATGAATATCAATGCATCGATTGTTCAGAGCTTTGTTGGAGATGTAGAAGGCGTTGTGAATGAACCAAGGACGGATTTGAAGCCTTGCAAATTCTCGACATCCTGGAACCAACACAAATAAGTCATTTCCTTCCTGATGGCATTCGTGAAGCAGTTTAATAACTGAGGTTTCCTCCGAGTATACCAGAAATAGGTAGGTGTACGATGTCACTGGAATAGGCTTTCCGCAGACTAAAATATTTTTCGGCCCTCTCTCATAACCGTCTATAAATAATTATCTTCATTTTTAAGGCCTTTTTTGAGTCAAAAACCCATTTTCTTACCTTTTTTATAGTATCCATTGGCATACATGAAGACCCAATATTTTTTTATTTCGTTAAAAACCTTTTTTTCAAATATTTAGGTCTTTAAAAATCTTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTTCCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTTAAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGAGCCAAAAGAGAGAGCATAATAATCACAGAAGAATTGACTTTTTTGATCCAGGAAATGGCAAAAAATAGAGAAAAAAAACTGAATGTGTATAGATGGCAAGTAAGAGAGACATTATGGAAAATCGAGAGAATTAGAGAAAAAAAAGTGAAATAATCGAAATATTAATCAACTCCTGAGAAGATTTCCGAGTTTTCAATAGCCGTTAACAGTTTTGATTTGAGTTCTTTGAATGTTGTGTAAGGCGGCAGGTCGAGGCGATTGAAGCTGAAAAAAGGTAAAATTTAAATTGTTTCGTAATGCAATTGCGCTTTATTGAGAGTC</canonical>
            <polymorphic>CTCGGAAGTCCTCCAACGAAGACGGTACGATGAATATCAATGCATCGATTGTTCAGAGCTTTGTTGGAGATGTAGAAGGCGTTGTGAATGAACCAAGGACGGATTTGAAGCCTTGCAAATTCTCGACATCCTGGAACCAACACAAATAAGTCATTTCCTTCCTGATGGCATTCGTGAAGCAGTTTAATAACTGAGGTTTCCTCCGAGTATACCAGAAATAGGTAGGTGTACGATGTCACTGGAATAGGCTTTCCGCAGACTAAAATATTTTTCGGCCCTCTCTCATAACCGTCTATAAATAATTATCTTCATTTTTAAGGCCTTTTTTGAGTCAAAAACCCATTTTCTTACCTTTTTTATAGTATCCATTGGCATACATGAAGACCCAATATTTTTTTATTTCGTTAAAAACCTTTTTTTCAAATATTTAGGTCTTTAAAAATCTTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTTYCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTTAAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGAGCCAAAAGAGAGAGCATAATAATCACAGAAGAATTGACTTTTTTGATCCAGGAAATGGCAAAAAATAGAGAAAAAAAACTGAATGTGTATAGATGGCAAGTAAGAGAGACATTATGGAAAATCGAGAGAATTAGAGAAAAAAAAGTGAAATAATCGAAATATTAATCAACTCCTGAGAAGATTTCCGAGTTTTCAATAGCCGTTAACAGTTTTGATTTGAGTTCTTTGAATGTTGTGTAAGGCGGCAGGTCGAGGCGATTGAAGCTGAAAAAAGGTAAAATTTAAATTGTTTCGTAATGCAATTGCGCTTTATTGAGAGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>389 253 247 80 31</canonical_bands>
                <polymorphic_bands>389 278 253 80</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>288 267 227 218</canonical_bands>
                <polymorphic_bands>515 267 218</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATTTTATTCTGAAGCGATTTT</pcr_primer_p1>
		<pcr_primer_p2>TCCTTGACATCTGTTTTATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>TTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTTCCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTTAAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGA</canonical_amplicon>
		<polymorphic_amplicon>TTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTTYCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTTAAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16998</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>179186</contig_pos>
        <strand>+</strand>
        <context>TACTGTAGTG[C/T]ATTTYCGCGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTG</left_flank>
        <right_flank>ATTTCCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAATCTCGGAAGTCCTCCAACGAAGACGGTACGATGAATATCAATGCATCGATTGTTCAGAGCTTTGTTGGAGATGTAGAAGGCGTTGTGAATGAACCAAGGACGGATTTGAAGCCTTGCAAATTCTCGACATCCTGGAACCAACACAAATAAGTCATTTCCTTCCTGATGGCATTCGTGAAGCAGTTTAATAACTGAGGTTTCCTCCGAGTATACCAGAAATAGGTAGGTGTACGATGTCACTGGAATAGGCTTTCCGCAGACTAAAATATTTTTCGGCCCTCTCTCATAACCGTCTATAAATAATTATCTTCATTTTTAAGGCCTTTTTTGAGTCAAAAACCCATTTTCTTACCTTTTTTATAGTATCCATTGGCATACATGAAGACCCAATATTTTTTTATTTCGTTAAAAACCTTTTTTTCAAATATTTAGGTCTTTAAAAATCTTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTTCCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTTAAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGAGCCAAAAGAGAGAGCATAATAATCACAGAAGAATTGACTTTTTTGATCCAGGAAATGGCAAAAAATAGAGAAAAAAAACTGAATGTGTATAGATGGCAAGTAAGAGAGACATTATGGAAAATCGAGAGAATTAGAGAAAAAAAAGTGAAATAATCGAAATATTAATCAACTCCTGAGAAGATTTCCGAGTTTTCAATAGCCGTTAACAGTTTTGATTTGAGTTCTTTGAATGTTGTGTAAGGCGGCAGGTCGAGGCGATTGAAGCTGAAAAAAGGTAAAATTTAAATTGTTTCGTAATGCAATTGCGCTTTATTGA</canonical>
            <polymorphic>CAAATCTCGGAAGTCCTCCAACGAAGACGGTACGATGAATATCAATGCATCGATTGTTCAGAGCTTTGTTGGAGATGTAGAAGGCGTTGTGAATGAACCAAGGACGGATTTGAAGCCTTGCAAATTCTCGACATCCTGGAACCAACACAAATAAGTCATTTCCTTCCTGATGGCATTCGTGAAGCAGTTTAATAACTGAGGTTTCCTCCGAGTATACCAGAAATAGGTAGGTGTACGATGTCACTGGAATAGGCTTTCCGCAGACTAAAATATTTTTCGGCCCTCTCTCATAACCGTCTATAAATAATTATCTTCATTTTTAAGGCCTTTTTTGAGTCAAAAACCCATTTTCTTACCTTTTTTATAGTATCCATTGGCATACATGAAGACCCAATATTTTTTTATTTCGTTAAAAACCTTTTTTTCAAATATTTAGGTCTTTAAAAATCTTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGYATTTCCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTTAAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGAGCCAAAAGAGAGAGCATAATAATCACAGAAGAATTGACTTTTTTGATCCAGGAAATGGCAAAAAATAGAGAAAAAAAACTGAATGTGTATAGATGGCAAGTAAGAGAGACATTATGGAAAATCGAGAGAATTAGAGAAAAAAAAGTGAAATAATCGAAATATTAATCAACTCCTGAGAAGATTTCCGAGTTTTCAATAGCCGTTAACAGTTTTGATTTGAGTTCTTTGAATGTTGTGTAAGGCGGCAGGTCGAGGCGATTGAAGCTGAAAAAAGGTAAAATTTAAATTGTTTCGTAATGCAATTGCGCTTTATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>441 379 73 47 19 18 17 6</canonical_bands>
                <polymorphic_bands>441 397 73 47 19 17 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTCAAAAACCCATTTTCTTA</pcr_primer_p1>
		<pcr_primer_p2>AAGTTCGGTATTGTTCGTTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>GAGTCAAAAACCCATTTTCTTACCTTTTTTATAGTATCCATTGGCATACATGAAGACCCAATATTTTTTTATTTCGTTAAAAACCTTTTTTTCAAATATTTAGGTCTTTAAAAATCTTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTTCCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTT</canonical_amplicon>
		<polymorphic_amplicon>GAGTCAAAAACCCATTTTCTTACCTTTTTTATAGTATCCATTGGCATACATGAAGACCCAATATTTTTTTATTTCGTTAAAAACCTTTTTTTCAAATATTTAGGTCTTTAAAAATCTTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGYATTTCCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb16999</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>179091</contig_pos>
        <strand>+</strand>
        <context>TATTTTTTTA[A/T]TTCGTTAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCTTTTTTATAGTATCCATTGGCATACATGAAGACCCAATATTTTTTTA</left_flank>
        <right_flank>TTCGTTAAAAACCTTTTTTTCAAATATTTAGGTCTTTAAAAATCTTATTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCCTTCGGATATCCATAGTTTTCATCCATATCAATATTGACGAGTAGAACCTTTCCGAATCCTGAAAACACTTGAGCAATCTTCTCGGCTGTCACAAATCTCGGAAGTCCTCCAACGAAGACGGTACGATGAATATCAATGCATCGATTGTTCAGAGCTTTGTTGGAGATGTAGAAGGCGTTGTGAATGAACCAAGGACGGATTTGAAGCCTTGCAAATTCTCGACATCCTGGAACCAACACAAATAAGTCATTTCCTTCCTGATGGCATTCGTGAAGCAGTTTAATAACTGAGGTTTCCTCCGAGTATACCAGAAATAGGTAGGTGTACGATGTCACTGGAATAGGCTTTCCGCAGACTAAAATATTTTTCGGCCCTCTCTCATAACCGTCTATAAATAATTATCTTCATTTTTAAGGCCTTTTTTGAGTCAAAAACCCATTTTCTTACCTTTTTTATAGTATCCATTGGCATACATGAAGACCCAATATTTTTTTATTTCGTTAAAAACCTTTTTTTCAAATATTTAGGTCTTTAAAAATCTTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTTCCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTTAAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGAGCCAAAAGAGAGAGCATAATAATCACAGAAGAATTGACTTTTTTGATCCAGGAAATGGCAAAAAATAGAGAAAAAAAACTGAATGTGTATAGATGGCAAGTAAGAGAGACATTATGGAAAATCGAGAGAATTAGAGAAAAAAAAGTGAAATAATCGAAATATTAATCAACTCCTGAGAAGATTTCCGAGTTTTCAATAGCCGTTAACAGTTTTGATTTGAG</canonical>
            <polymorphic>ACCCTTCGGATATCCATAGTTTTCATCCATATCAATATTGACGAGTAGAACCTTTCCGAATCCTGAAAACACTTGAGCAATCTTCTCGGCTGTCACAAATCTCGGAAGTCCTCCAACGAAGACGGTACGATGAATATCAATGCATCGATTGTTCAGAGCTTTGTTGGAGATGTAGAAGGCGTTGTGAATGAACCAAGGACGGATTTGAAGCCTTGCAAATTCTCGACATCCTGGAACCAACACAAATAAGTCATTTCCTTCCTGATGGCATTCGTGAAGCAGTTTAATAACTGAGGTTTCCTCCGAGTATACCAGAAATAGGTAGGTGTACGATGTCACTGGAATAGGCTTTCCGCAGACTAAAATATTTTTCGGCCCTCTCTCATAACCGTCTATAAATAATTATCTTCATTTTTAAGGCCTTTTTTGAGTCAAAAACCCATTTTCTTACCTTTTTTATAGTATCCATTGGCATACATGAAGACCCAATATTTTTTTAWTTCGTTAAAAACCTTTTTTTCAAATATTTAGGTCTTTAAAAATCTTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTTCCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTTAAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGAGCCAAAAGAGAGAGCATAATAATCACAGAAGAATTGACTTTTTTGATCCAGGAAATGGCAAAAAATAGAGAAAAAAAACTGAATGTGTATAGATGGCAAGTAAGAGAGACATTATGGAAAATCGAGAGAATTAGAGAAAAAAAAGTGAAATAATCGAAATATTAATCAACTCCTGAGAAGATTTCCGAGTTTTCAATAGCCGTTAACAGTTTTGATTTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATAGGTAGGTGTACGATGTCA</pcr_primer_p1>
		<pcr_primer_p2>AATCGCTTCAGAATAAAATAAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATAGGTAGGTGTACGATGTCACTGGAATAGGCTTTCCGCAGACTAAAATATTTTTCGGCCCTCTCTCATAACCGTCTATAAATAATTATCTTCATTTTTAAGGCCTTTTTTGAGTCAAAAACCCATTTTCTTACCTTTTTTATAGTATCCATTGGCATACATGAAGACCCAATATTTTTTTATTTCGTTAAAAACCTTTTTTTCAAATATTTAGGTCTTTAAAAATCTTATTTTATTCTGAAGCGATT</canonical_amplicon>
		<polymorphic_amplicon>AAATAGGTAGGTGTACGATGTCACTGGAATAGGCTTTCCGCAGACTAAAATATTTTTCGGCCCTCTCTCATAACCGTCTATAAATAATTATCTTCATTTTTAAGGCCTTTTTTGAGTCAAAAACCCATTTTCTTACCTTTTTTATAGTATCCATTGGCATACATGAAGACCCAATATTTTTTTAWTTCGTTAAAAACCTTTTTTTCAAATATTTAGGTCTTTAAAAATCTTATTTTATTCTGAAGCGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17000</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>179115</contig_pos>
        <strand>+</strand>
        <context>TTTTTTTCAA[A/T]TATTTAGGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATACATGAAGACCCAATATTTTTTTATTTCGTTAAAAACCTTTTTTTCAA</left_flank>
        <right_flank>TATTTAGGTCTTTAAAAATCTTATTTTATTCTGAAGCGATTTTATTTTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCATATCAATATTGACGAGTAGAACCTTTCCGAATCCTGAAAACACTTGAGCAATCTTCTCGGCTGTCACAAATCTCGGAAGTCCTCCAACGAAGACGGTACGATGAATATCAATGCATCGATTGTTCAGAGCTTTGTTGGAGATGTAGAAGGCGTTGTGAATGAACCAAGGACGGATTTGAAGCCTTGCAAATTCTCGACATCCTGGAACCAACACAAATAAGTCATTTCCTTCCTGATGGCATTCGTGAAGCAGTTTAATAACTGAGGTTTCCTCCGAGTATACCAGAAATAGGTAGGTGTACGATGTCACTGGAATAGGCTTTCCGCAGACTAAAATATTTTTCGGCCCTCTCTCATAACCGTCTATAAATAATTATCTTCATTTTTAAGGCCTTTTTTGAGTCAAAAACCCATTTTCTTACCTTTTTTATAGTATCCATTGGCATACATGAAGACCCAATATTTTTTTATTTCGTTAAAAACCTTTTTTTCAAATATTTAGGTCTTTAAAAATCTTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTTCCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTTAAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGAGCCAAAAGAGAGAGCATAATAATCACAGAAGAATTGACTTTTTTGATCCAGGAAATGGCAAAAAATAGAGAAAAAAAACTGAATGTGTATAGATGGCAAGTAAGAGAGACATTATGGAAAATCGAGAGAATTAGAGAAAAAAAAGTGAAATAATCGAAATATTAATCAACTCCTGAGAAGATTTCCGAGTTTTCAATAGCCGTTAACAGTTTTGATTTGAGTTCTTTGAATGTTGTGTAAGGCGG</canonical>
            <polymorphic>ATCCATATCAATATTGACGAGTAGAACCTTTCCGAATCCTGAAAACACTTGAGCAATCTTCTCGGCTGTCACAAATCTCGGAAGTCCTCCAACGAAGACGGTACGATGAATATCAATGCATCGATTGTTCAGAGCTTTGTTGGAGATGTAGAAGGCGTTGTGAATGAACCAAGGACGGATTTGAAGCCTTGCAAATTCTCGACATCCTGGAACCAACACAAATAAGTCATTTCCTTCCTGATGGCATTCGTGAAGCAGTTTAATAACTGAGGTTTCCTCCGAGTATACCAGAAATAGGTAGGTGTACGATGTCACTGGAATAGGCTTTCCGCAGACTAAAATATTTTTCGGCCCTCTCTCATAACCGTCTATAAATAATTATCTTCATTTTTAAGGCCTTTTTTGAGTCAAAAACCCATTTTCTTACCTTTTTTATAGTATCCATTGGCATACATGAAGACCCAATATTTTTTTATTTCGTTAAAAACCTTTTTTTCAAWTATTTAGGTCTTTAAAAATCTTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTTCCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTTAAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGAGCCAAAAGAGAGAGCATAATAATCACAGAAGAATTGACTTTTTTGATCCAGGAAATGGCAAAAAATAGAGAAAAAAAACTGAATGTGTATAGATGGCAAGTAAGAGAGACATTATGGAAAATCGAGAGAATTAGAGAAAAAAAAGTGAAATAATCGAAATATTAATCAACTCCTGAGAAGATTTCCGAGTTTTCAATAGCCGTTAACAGTTTTGATTTGAGTTCTTTGAATGTTGTGTAAGGCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>414 330 124 85 35 12</canonical_bands>
                <polymorphic_bands>449 330 124 85 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTCAAAAACCCATTTTCTTA</pcr_primer_p1>
		<pcr_primer_p2>AAGTTCGGTATTGTTCGTTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>GAGTCAAAAACCCATTTTCTTACCTTTTTTATAGTATCCATTGGCATACATGAAGACCCAATATTTTTTTATTTCGTTAAAAACCTTTTTTTCAAATATTTAGGTCTTTAAAAATCTTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTTCCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTT</canonical_amplicon>
		<polymorphic_amplicon>GAGTCAAAAACCCATTTTCTTACCTTTTTTATAGTATCCATTGGCATACATGAAGACCCAATATTTTTTTATTTCGTTAAAAACCTTTTTTTCAAWTATTTAGGTCTTTAAAAATCTTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTTCCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17010</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>276868</contig_pos>
        <strand>+</strand>
        <context>ACATCAGAAA[C/G]CACTATTAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TATTGCGAAAAATTTCAAAATATGGCGAAAAATTACGAGAACATCAGAAA</left_flank>
        <right_flank>CACTATTAAAAGCTACTTATCGTGTTTTGAGCGATTTTCTCTCTGAAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAACTTCTGGAGCAAAAGTCACTGGTGGCAGCTTGACTAGCTGTTTGATGAGCAATCGCATCGCTTCGCAGATGACGTCAACGTCGGTGTGGTGATCTGAGAAGTGATTTTGAGATGAAAAATCACAGTTTTTGCCTCTGGAAAACGGACCTTTTTGGTCCGAAATTCTGTGTCAAATTGGGTCTTTTTTGATCTGACCATTTCCAGGCGATTTTTTTCAGATTTTTAAACCTTTTTTCTCCATTTTTCAAAAAAAAACTCACAATTCTCTACAACCCGTAATCTATAAACAATTGCCGCTGTCAAATCTCCTGAAATCTCGTTTTCTCCATTCTTGATGACCCATCGGGCAAGTCCGAGTGCCAGATCTCGTGCACCCATTCCTTGAAGACTTTTTCTATTTGAATTGTTTCTTTTTTTTTGGATTTTATCTGAAAAAAATCGGAATATTGCGAAAAATTTCAAAATATGGCGAAAAATTACGAGAACATCAGAAAGCACTATTAAAAGCTACTTATCGTGTTTTGAGCGATTTTCTCTCTGAAAATTTCGATTTTTCAGGTTCGAAATTGCGAATTAACTAAAAAAAATAAGGATTGATCTTTGAAATAGCTTAATATCCCTATTTCTCAATTAAATTTGGCTCGTTTTGTACTTAAAAAATTCGAAATTATCTCTACTTTACAAATAAATAGGTCTTATCAGCGGAAGCTCACAAAATCCAGGTCAAAATCAGAGATAAACACGTGCAGTCATCAAAAATAAACAGAAAAGGGGCGGAGTAGGTGGACGCCCTGCCGCGGGGTTGCAGAAATCGCGTGCCAGGCTTGCGTTTTGATTTTTCGAAAAGTTTTCGGTGCGCGCGCAGCGGTTTTTCTATCAATTTTTCTCATTCTTCGCGGTTTTTTTTTCTGGGAAATGTTCTTTTTTTTCTCTACGAAAGTAGAAAATCTAGTCTGAATTAATGGACCAACTAGGCTAATAATCGGGCAGTATTG</canonical>
            <polymorphic>CCAAACTTCTGGAGCAAAAGTCACTGGTGGCAGCTTGACTAGCTGTTTGATGAGCAATCGCATCGCTTCGCAGATGACGTCAACGTCGGTGTGGTGATCTGAGAAGTGATTTTGAGATGAAAAATCACAGTTTTTGCCTCTGGAAAACGGACCTTTTTGGTCCGAAATTCTGTGTCAAATTGGGTCTTTTTTGATCTGACCATTTCCAGGCGATTTTTTTCAGATTTTTAAACCTTTTTTCTCCATTTTTCAAAAAAAAACTCACAATTCTCTACAACCCGTAATCTATAAACAATTGCCGCTGTCAAATCTCCTGAAATCTCGTTTTCTCCATTCTTGATGACCCATCGGGCAAGTCCGAGTGCCAGATCTCGTGCACCCATTCCTTGAAGACTTTTTCTATTTGAATTGTTTCTTTTTTTTTGGATTTTATCTGAAAAAAATCGGAATATTGCGAAAAATTTCAAAATATGGCGAAAAATTACGAGAACATCAGAAASCACTATTAAAAGCTACTTATCGTGTTTTGAGCGATTTTCTCTCTGAAAATTTCGATTTTTCAGGTTCGAAATTGCGAATTAACTAAAAAAAATAAGGATTGATCTTTGAAATAGCTTAATATCCCTATTTCTCAATTAAATTTGGCTCGTTTTGTACTTAAAAAATTCGAAATTATCTCTACTTTACAAATAAATAGGTCTTATCAGCGGAAGCTCACAAAATCCAGGTCAAAATCAGAGATAAACACGTGCAGTCATCAAAAATAAACAGAAAAGGGGCGGAGTAGGTGGACGCCCTGCCGCGGGGTTGCAGAAATCGCGTGCCAGGCTTGCGTTTTGATTTTTCGAAAAGTTTTCGGTGCGCGCGCAGCGGTTTTTCTATCAATTTTTCTCATTCTTCGCGGTTTTTTTTTCTGGGAAATGTTCTTTTTTTTCTCTACGAAAGTAGAAAATCTAGTCTGAATTAATGGACCAACTAGGCTAATAATCGGGCAGTATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTGAAGACTTTTTCTATTTGA</pcr_primer_p1>
		<pcr_primer_p2>AATTGAGAAATAGGGATATTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CCTTGAAGACTTTTTCTATTTGAATTGTTTCTTTTTTTTTGGATTTTATCTGAAAAAAATCGGAATATTGCGAAAAATTTCAAAATATGGCGAAAAATTACGAGAACATCAGAAAGCACTATTAAAAGCTACTTATCGTGTTTTGAGCGATTTTCTCTCTGAAAATTTCGATTTTTCAGGTTCGAAATTGCGAATTAACTAAAAAAAATAAGGATTGATCTTTGAAATAGCTTAATATCCCTATTTCTCAATT</canonical_amplicon>
		<polymorphic_amplicon>CCTTGAAGACTTTTTCTATTTGAATTGTTTCTTTTTTTTTGGATTTTATCTGAAAAAAATCGGAATATTGCGAAAAATTTCAAAATATGGCGAAAAATTACGAGAACATCAGAAASCACTATTAAAAGCTACTTATCGTGTTTTGAGCGATTTTCTCTCTGAAAATTTCGATTTTTCAGGTTCGAAATTGCGAATTAACTAAAAAAAATAAGGATTGATCTTTGAAATAGCTTAATATCCCTATTTCTCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17012</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>276496</contig_pos>
        <strand>+</strand>
        <context>TGAAAAATCA[C/G]AGTTTTTGCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGTCAACGTCGGTGTGGTGATCTGAGAAGTGATTTTGAGATGAAAAATCA</left_flank>
        <right_flank>AGTTTTTGCCTCTGGAAAACGGACCTTTTTGGTCCGAAATTCTGTGTCAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCGAAAATGTGTCAAAAATGTTTCGTTCCAAAAGCCAACTCGCTTGTTTCGCCGACTCATTTGTCGTCGAAATCTTGATATCCTCCCATGAACCGCCCATCATTTTCTCCATGAGTTCCCCAAAATCACAGCCCCAAATCGCCGAAAAAACTCGTCGAGGCAGTCCGATTTCCAGGACGGCTTCTCTTGAAATCGTCGTGATTTGTTCGCAAGTTTTTAGGCCAGAATTAGGCGGCAATTCGGAATCCACGTCGTCTAGATTCTCATCTGGAGCTGATGACGTGGCAATATGAGACAAATCAATGGTTATCATCATATCAGACCATAGGGGTTCAATGCCTCCTTCGATGATTGCTGTGAGGATGGGAATCCAAACTTCTGGAGCAAAAGTCACTGGTGGCAGCTTGACTAGCTGTTTGATGAGCAATCGCATCGCTTCGCAGATGACGTCAACGTCGGTGTGGTGATCTGAGAAGTGATTTTGAGATGAAAAATCACAGTTTTTGCCTCTGGAAAACGGACCTTTTTGGTCCGAAATTCTGTGTCAAATTGGGTCTTTTTTGATCTGACCATTTCCAGGCGATTTTTTTCAGATTTTTAAACCTTTTTTCTCCATTTTTCAAAAAAAAACTCACAATTCTCTACAACCCGTAATCTATAAACAATTGCCGCTGTCAAATCTCCTGAAATCTCGTTTTCTCCATTCTTGATGACCCATCGGGCAAGTCCGAGTGCCAGATCTCGTGCACCCATTCCTTGAAGACTTTTTCTATTTGAATTGTTTCTTTTTTTTTGGATTTTATCTGAAAAAAATCGGAATATTGCGAAAAATTTCAAAATATGGCGAAAAATTACGAGAACATCAGAAAGCACTATTAAAAGCTACTTATCGTGTTTTGAGCGATTTTCTCTCTGAAAATTTCGATTTTTCAGGTTCGAAATTGCGAATTAACTAAAAAAAATAAGGATTGATCTTTGAAATAGCTTAATATCCCTAT</canonical>
            <polymorphic>CTCCGAAAATGTGTCAAAAATGTTTCGTTCCAAAAGCCAACTCGCTTGTTTCGCCGACTCATTTGTCGTCGAAATCTTGATATCCTCCCATGAACCGCCCATCATTTTCTCCATGAGTTCCCCAAAATCACAGCCCCAAATCGCCGAAAAAACTCGTCGAGGCAGTCCGATTTCCAGGACGGCTTCTCTTGAAATCGTCGTGATTTGTTCGCAAGTTTTTAGGCCAGAATTAGGCGGCAATTCGGAATCCACGTCGTCTAGATTCTCATCTGGAGCTGATGACGTGGCAATATGAGACAAATCAATGGTTATCATCATATCAGACCATAGGGGTTCAATGCCTCCTTCGATGATTGCTGTGAGGATGGGAATCCAAACTTCTGGAGCAAAAGTCACTGGTGGCAGCTTGACTAGCTGTTTGATGAGCAATCGCATCGCTTCGCAGATGACGTCAACGTCGGTGTGGTGATCTGAGAAGTGATTTTGAGATGAAAAATCASAGTTTTTGCCTCTGGAAAACGGACCTTTTTGGTCCGAAATTCTGTGTCAAATTGGGTCTTTTTTGATCTGACCATTTCCAGGCGATTTTTTTCAGATTTTTAAACCTTTTTTCTCCATTTTTCAAAAAAAAACTCACAATTCTCTACAACCCGTAATCTATAAACAATTGCCGCTGTCAAATCTCCTGAAATCTCGTTTTCTCCATTCTTGATGACCCATCGGGCAAGTCCGAGTGCCAGATCTCGTGCACCCATTCCTTGAAGACTTTTTCTATTTGAATTGTTTCTTTTTTTTTGGATTTTATCTGAAAAAAATCGGAATATTGCGAAAAATTTCAAAATATGGCGAAAAATTACGAGAACATCAGAAAGCACTATTAAAAGCTACTTATCGTGTTTTGAGCGATTTTCTCTCTGAAAATTTCGATTTTTCAGGTTCGAAATTGCGAATTAACTAAAAAAAATAAGGATTGATCTTTGAAATAGCTTAATATCCCTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>124 117 104 100 90 75 72 62 49 47 35 34 22 19 13 12 12 6 3 2 2</canonical_bands>
                <polymorphic_bands>124 117 104 100 90 75 72 66 62 49 35 34 22 13 12 12 6 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCTTGACTAGCTGTTTGATG</pcr_primer_p1>
		<pcr_primer_p2>GGTTGTAGAGAATTGTGAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGCTTGACTAGCTGTTTGATGAGCAATCGCATCGCTTCGCAGATGACGTCAACGTCGGTGTGGTGATCTGAGAAGTGATTTTGAGATGAAAAATCACAGTTTTTGCCTCTGGAAAACGGACCTTTTTGGTCCGAAATTCTGTGTCAAATTGGGTCTTTTTTGATCTGACCATTTCCAGGCGATTTTTTTCAGATTTTTAAACCTTTTTTCTCCATTTTTCAAAAAAAAACTCACAATTCTCTACAACC</canonical_amplicon>
		<polymorphic_amplicon>AGCTTGACTAGCTGTTTGATGAGCAATCGCATCGCTTCGCAGATGACGTCAACGTCGGTGTGGTGATCTGAGAAGTGATTTTGAGATGAAAAATCASAGTTTTTGCCTCTGGAAAACGGACCTTTTTGGTCCGAAATTCTGTGTCAAATTGGGTCTTTTTTGATCTGACCATTTCCAGGCGATTTTTTTCAGATTTTTAAACCTTTTTTCTCCATTTTTCAAAAAAAAACTCACAATTCTCTACAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17013</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>355197</contig_pos>
        <strand>+</strand>
        <context>AGCTCAATAT[C/G]ACGTTCGTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAAAACACAAAACTAAGAAGTTGAAAACAATTATAAGCAAGCTCAATAT</left_flank>
        <right_flank>ACGTTCGTAAAAGAATCGTGTGGATCGAAAAGGGTCTCGAGGGGAAAACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAAAATCGTTTAGGAAAAAAAAATCCGGTTTTTAGAAATTTTAAGACTAAATTTCAAAAAAACCGGCAAAAATGGTATTTCGTGGCGATGATCCAAAAAATTCTTCATAGCCTGCGCCTTTAAAGTTTTTGTAATTTATTGAAAATTTTGATGTTTGGGGGTTTTTCTTGAAAAAATCCGACTGAAAATAAAAGATTATATGGATTTCAGAGCAAAAAAAAACACTTCAATCAAACAAAAATTTGAGTTTCTTTAAAGTTTTTAAAGTTATTTCAAAGGCACAAAATCAAATTACAATAAAAATTACCCTCTGTGCCTTTAATATACGGTAATTTTGTGTGAAAACCGGGGGAACGGGTAATAGAAAGGATTCCACATTTCACATATATTACGAAATACCATTAAAAAAAGTCCCTTGAATCCAAAGAGCATTCTAGAAGATTAACAAAAAAACACAAAACTAAGAAGTTGAAAACAATTATAAGCAAGCTCAATATGACGTTCGTAAAAGAATCGTGTGGATCGAAAAGGGTCTCGAGGGGAAAACACATTCGGAACACACACACTTACACAAATCTCTGCGTCTCTCCCCCCTCAACACACCCGTCTGGCTTTTCTCGGCACTCTCCATCAAACCCATTATACCTCTCGCTGTTCCGTCGACTGCCTCTTCCCTTTTTAAGCACCCAATTAATATTTGTCTGACTGTCTGGCGCTCTCTCCTCTCTCGAACACTCTCTCACTTCTCGTTCTCTCCCCGAGAGAGGAGGCGCCTTCCCTCCCGTCTTTCTCTTCTTGTATCCCTTGTGTTGCCTGTGTTACCCCGTCCTCCCATCCATCCATTTTCCCCCCGCCGTCACCCCCAGCCTCTCCCTCCACCATCTTCCCCCCCTTTTCAAAAATCGATACTTTTGACAGGGCTGAAAAATCTCAAAAATCCCAAAAAAGTCCTTTCTGATAAAAGAAGGATTCATGAAATTCCCCCAACTAAATGAAAA</canonical>
            <polymorphic>TTTAAAATCGTTTAGGAAAAAAAAATCCGGTTTTTAGAAATTTTAAGACTAAATTTCAAAAAAACCGGCAAAAATGGTATTTCGTGGCGATGATCCAAAAAATTCTTCATAGCCTGCGCCTTTAAAGTTTTTGTAATTTATTGAAAATTTTGATGTTTGGGGGTTTTTCTTGAAAAAATCCGACTGAAAATAAAAGATTATATGGATTTCAGAGCAAAAAAAAACACTTCAATCAAACAAAAATTTGAGTTTCTTTAAAGTTTTTAAAGTTATTTCAAAGGCACAAAATCAAATTACAATAAAAATTACCCTCTGTGCCTTTAATATACGGTAATTTTGTGTGAAAACCGGGGGAACGGGTAATAGAAAGGATTCCACATTTCACATATATTACGAAATACCATTAAAAAAAGTCCCTTGAATCCAAAGAGCATTCTAGAAGATTAACAAAAAAACACAAAACTAAGAAGTTGAAAACAATTATAAGCAAGCTCAATATSACGTTCGTAAAAGAATCGTGTGGATCGAAAAGGGTCTCGAGGGGAAAACACATTCGGAACACACACACTTACACAAATCTCTGCGTCTCTCCCCCCTCAACACACCCGTCTGGCTTTTCTCGGCACTCTCCATCAAACCCATTATACCTCTCGCTGTTCCGTCGACTGCCTCTTCCCTTTTTAAGCACCCAATTAATATTTGTCTGACTGTCTGGCGCTCTCTCCTCTCTCGAACACTCTCTCACTTCTCGTTCTCTCCCCGAGAGAGGAGGCGCCTTCCCTCCCGTCTTTCTCTTCTTGTATCCCTTGTGTTGCCTGTGTTACCCCGTCCTCCCATCCATCCATTTTCCCCCCGCCGTCACCCCCAGCCTCTCCCTCCACCATCTTCCCCCCCTTTTCAAAAATCGATACTTTTGACAGGGCTGAAAAATCTCAAAAATCCCAAAAAAGTCCTTTCTGATAAAAGAAGGATTCATGAAATTCCCCCAACTAAATGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACGGTAATTTTGTGTGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTGTGTAAGTGTGTGTGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATACGGTAATTTTGTGTGAAAACCGGGGGAACGGGTAATAGAAAGGATTCCACATTTCACATATATTACGAAATACCATTAAAAAAAGTCCCTTGAATCCAAAGAGCATTCTAGAAGATTAACAAAAAAACACAAAACTAAGAAGTTGAAAACAATTATAAGCAAGCTCAATATGACGTTCGTAAAAGAATCGTGTGGATCGAAAAGGGTCTCGAGGGGAAAACACATTCGGAACACACACACTTACACAAA</canonical_amplicon>
		<polymorphic_amplicon>ATACGGTAATTTTGTGTGAAAACCGGGGGAACGGGTAATAGAAAGGATTCCACATTTCACATATATTACGAAATACCATTAAAAAAAGTCCCTTGAATCCAAAGAGCATTCTAGAAGATTAACAAAAAAACACAAAACTAAGAAGTTGAAAACAATTATAAGCAAGCTCAATATSACGTTCGTAAAAGAATCGTGTGGATCGAAAAGGGTCTCGAGGGGAAAACACATTCGGAACACACACACTTACACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17014</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>356930</contig_pos>
        <strand>+</strand>
        <context>GGCCATAAGC[C/T]CTCCAATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGCGCTCTAATGAGAATGCCCTTGACGGGGTCTTAAATAGGCCATAAGC</left_flank>
        <right_flank>CTCCAATTTTGAGCCTTTTTTCTAAAGTTTACACTAACTTGTTCGAAATT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATAAGTCCTAAAGTTTTTCTTCAGTTTACAAGGTTTTTGTTTCAAAACATTGGAATTTTTATTGTATTTTTCCAAATTTGTTGGTCACAAAAACGGGGAAAAACATTTTTGATTTTATTCGGACTCATGACTCATTGATGTAGGAAACGTCCTTGATGTAGATTGATGCTAATTTGATTAGAATTGAGAATTTTTTTTTGGAAAGTTATCAGATTAAAAAGAATTTGAGATAGTATTAATCTGATTAAAAGGAATCGTAATCATTTGTTGAAAAAAATTGGAATCTGAAAATCCAATTTTAATTGACCGTATTTTTTGGTAATTTGCTCATAACTTGGATAATATTTTACCGATTCATTAGATTTTTATGCCAAAATGGAGAAAATTCCAGAAGCTACAATTTTTTGGTTAAGCACTTTTCCCAATAGTTTGATCTACCTGGTGAAAATGCGCTCTAATGAGAATGCCCTTGACGGGGTCTTAAATAGGCCATAAGCTCTCCAATTTTGAGCCTTTTTTCTAAAGTTTACACTAACTTGTTCGAAATTTCATTGTTTTTAAGATTTTCATAATTCACTATACATTATTCTTGGAAATTTCTAGAATTTCCAGAGTTTCTTCCGCCTTTATGACTTCAAATTTCAAATTAGGTTCATCTGACCAAAAATATTTTTAGAAGTAATTTTTAGCGAAAACTAGATTTTGTTATTTTCAATTGCTAACCTTGTTTACAGGTATAAATTACTTGAAGTGGAAGGAAAATTTTTTGGTAGAAAAAATATTTTTGAAGGAGTTTTTTCTAAATTTTGAAAAATTGGGAGTACTGTAGAACACTACTGTAAAAATGAATTACTGTAGTGAAGTTCAAAATATCAGACCATAATTGTACTTTGTGGTCTTGACCGTTTTCTTGGTTTAAGAGGATTATGTAAAAAAATTCAAATTTTAGTTTTTTCCCAAAAATTTAGTTCTGATTGTGAGTTTAATTATTCATAACT</canonical>
            <polymorphic>TTATAAGTCCTAAAGTTTTTCTTCAGTTTACAAGGTTTTTGTTTCAAAACATTGGAATTTTTATTGTATTTTTCCAAATTTGTTGGTCACAAAAACGGGGAAAAACATTTTTGATTTTATTCGGACTCATGACTCATTGATGTAGGAAACGTCCTTGATGTAGATTGATGCTAATTTGATTAGAATTGAGAATTTTTTTTTGGAAAGTTATCAGATTAAAAAGAATTTGAGATAGTATTAATCTGATTAAAAGGAATCGTAATCATTTGTTGAAAAAAATTGGAATCTGAAAATCCAATTTTAATTGACCGTATTTTTTGGTAATTTGCTCATAACTTGGATAATATTTTACCGATTCATTAGATTTTTATGCCAAAATGGAGAAAATTCCAGAAGCTACAATTTTTTGGTTAAGCACTTTTCCCAATAGTTTGATCTACCTGGTGAAAATGCGCTCTAATGAGAATGCCCTTGACGGGGTCTTAAATAGGCCATAAGCYCTCCAATTTTGAGCCTTTTTTCTAAAGTTTACACTAACTTGTTCGAAATTTCATTGTTTTTAAGATTTTCATAATTCACTATACATTATTCTTGGAAATTTCTAGAATTTCCAGAGTTTCTTCCGCCTTTATGACTTCAAATTTCAAATTAGGTTCATCTGACCAAAAATATTTTTAGAAGTAATTTTTAGCGAAAACTAGATTTTGTTATTTTCAATTGCTAACCTTGTTTACAGGTATAAATTACTTGAAGTGGAAGGAAAATTTTTTGGTAGAAAAAATATTTTTGAAGGAGTTTTTTCTAAATTTTGAAAAATTGGGAGTACTGTAGAACACTACTGTAAAAATGAATTACTGTAGTGAAGTTCAAAATATCAGACCATAATTGTACTTTGTGGTCTTGACCGTTTTCTTGGTTTAAGAGGATTATGTAAAAAAATTCAAATTTTAGTTTTTTCCCAAAAATTTAGTTCTGATTGTGAGTTTAATTATTCATAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>502 396 102</canonical_bands>
                <polymorphic_bands>604 396</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>487 396 95 15 7</canonical_bands>
                <polymorphic_bands>487 396 95 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAGTTTGATCTACCTGGTGAA</pcr_primer_p1>
		<pcr_primer_p2>AATATTTTTGGTCAGATGAACCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATAGTTTGATCTACCTGGTGAAAATGCGCTCTAATGAGAATGCCCTTGACGGGGTCTTAAATAGGCCATAAGCTCTCCAATTTTGAGCCTTTTTTCTAAAGTTTACACTAACTTGTTCGAAATTTCATTGTTTTTAAGATTTTCATAATTCACTATACATTATTCTTGGAAATTTCTAGAATTTCCAGAGTTTCTTCCGCCTTTATGACTTCAAATTTCAAATTAGGTTCATCTGACCAAAAATATT</canonical_amplicon>
		<polymorphic_amplicon>AATAGTTTGATCTACCTGGTGAAAATGCGCTCTAATGAGAATGCCCTTGACGGGGTCTTAAATAGGCCATAAGCYCTCCAATTTTGAGCCTTTTTTCTAAAGTTTACACTAACTTGTTCGAAATTTCATTGTTTTTAAGATTTTCATAATTCACTATACATTATTCTTGGAAATTTCTAGAATTTCCAGAGTTTCTTCCGCCTTTATGACTTCAAATTTCAAATTAGGTTCATCTGACCAAAAATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17015</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>357010</contig_pos>
        <strand>+</strand>
        <context>CATAATTCAC[A/T]ATACATTATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TACACTAACTTGTTCGAAATTTCATTGTTTTTAAGATTTTCATAATTCAC</left_flank>
        <right_flank>ATACATTATTCTTGGAAATTTCTAGAATTTCCAGAGTTTCTTCCGCCTTT</right_flank>
        <qual_score>149</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTGGTCACAAAAACGGGGAAAAACATTTTTGATTTTATTCGGACTCATGACTCATTGATGTAGGAAACGTCCTTGATGTAGATTGATGCTAATTTGATTAGAATTGAGAATTTTTTTTTGGAAAGTTATCAGATTAAAAAGAATTTGAGATAGTATTAATCTGATTAAAAGGAATCGTAATCATTTGTTGAAAAAAATTGGAATCTGAAAATCCAATTTTAATTGACCGTATTTTTTGGTAATTTGCTCATAACTTGGATAATATTTTACCGATTCATTAGATTTTTATGCCAAAATGGAGAAAATTCCAGAAGCTACAATTTTTTGGTTAAGCACTTTTCCCAATAGTTTGATCTACCTGGTGAAAATGCGCTCTAATGAGAATGCCCTTGACGGGGTCTTAAATAGGCCATAAGCTCTCCAATTTTGAGCCTTTTTTCTAAAGTTTACACTAACTTGTTCGAAATTTCATTGTTTTTAAGATTTTCATAATTCACTATACATTATTCTTGGAAATTTCTAGAATTTCCAGAGTTTCTTCCGCCTTTATGACTTCAAATTTCAAATTAGGTTCATCTGACCAAAAATATTTTTAGAAGTAATTTTTAGCGAAAACTAGATTTTGTTATTTTCAATTGCTAACCTTGTTTACAGGTATAAATTACTTGAAGTGGAAGGAAAATTTTTTGGTAGAAAAAATATTTTTGAAGGAGTTTTTTCTAAATTTTGAAAAATTGGGAGTACTGTAGAACACTACTGTAAAAATGAATTACTGTAGTGAAGTTCAAAATATCAGACCATAATTGTACTTTGTGGTCTTGACCGTTTTCTTGGTTTAAGAGGATTATGTAAAAAAATTCAAATTTTAGTTTTTTCCCAAAAATTTAGTTCTGATTGTGAGTTTAATTATTCATAACTTTTCAATTTTTGGCTAAACTGCTATAAATTTTACACTAAAATGTTGGAAATTTTATAATCTACAAACTTGTAGTAAAACA</canonical>
            <polymorphic>TGTTGGTCACAAAAACGGGGAAAAACATTTTTGATTTTATTCGGACTCATGACTCATTGATGTAGGAAACGTCCTTGATGTAGATTGATGCTAATTTGATTAGAATTGAGAATTTTTTTTTGGAAAGTTATCAGATTAAAAAGAATTTGAGATAGTATTAATCTGATTAAAAGGAATCGTAATCATTTGTTGAAAAAAATTGGAATCTGAAAATCCAATTTTAATTGACCGTATTTTTTGGTAATTTGCTCATAACTTGGATAATATTTTACCGATTCATTAGATTTTTATGCCAAAATGGAGAAAATTCCAGAAGCTACAATTTTTTGGTTAAGCACTTTTCCCAATAGTTTGATCTACCTGGTGAAAATGCGCTCTAATGAGAATGCCCTTGACGGGGTCTTAAATAGGCCATAAGCTCTCCAATTTTGAGCCTTTTTTCTAAAGTTTACACTAACTTGTTCGAAATTTCATTGTTTTTAAGATTTTCATAATTCACWATACATTATTCTTGGAAATTTCTAGAATTTCCAGAGTTTCTTCCGCCTTTATGACTTCAAATTTCAAATTAGGTTCATCTGACCAAAAATATTTTTAGAAGTAATTTTTAGCGAAAACTAGATTTTGTTATTTTCAATTGCTAACCTTGTTTACAGGTATAAATTACTTGAAGTGGAAGGAAAATTTTTTGGTAGAAAAAATATTTTTGAAGGAGTTTTTTCTAAATTTTGAAAAATTGGGAGTACTGTAGAACACTACTGTAAAAATGAATTACTGTAGTGAAGTTCAAAATATCAGACCATAATTGTACTTTGTGGTCTTGACCGTTTTCTTGGTTTAAGAGGATTATGTAAAAAAATTCAAATTTTAGTTTTTTCCCAAAAATTTAGTTCTGATTGTGAGTTTAATTATTCATAACTTTTCAATTTTTGGCTAAACTGCTATAAATTTTACACTAAAATGTTGGAAATTTTATAATCTACAAACTTGTAGTAAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAGTTTGATCTACCTGGTGAA</pcr_primer_p1>
		<pcr_primer_p2>AATATTTTTGGTCAGATGAACCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATAGTTTGATCTACCTGGTGAAAATGCGCTCTAATGAGAATGCCCTTGACGGGGTCTTAAATAGGCCATAAGCTCTCCAATTTTGAGCCTTTTTTCTAAAGTTTACACTAACTTGTTCGAAATTTCATTGTTTTTAAGATTTTCATAATTCACTATACATTATTCTTGGAAATTTCTAGAATTTCCAGAGTTTCTTCCGCCTTTATGACTTCAAATTTCAAATTAGGTTCATCTGACCAAAAATATT</canonical_amplicon>
		<polymorphic_amplicon>AATAGTTTGATCTACCTGGTGAAAATGCGCTCTAATGAGAATGCCCTTGACGGGGTCTTAAATAGGCCATAAGCTCTCCAATTTTGAGCCTTTTTTCTAAAGTTTACACTAACTTGTTCGAAATTTCATTGTTTTTAAGATTTTCATAATTCACWATACATTATTCTTGGAAATTTCTAGAATTTCCAGAGTTTCTTCCGCCTTTATGACTTCAAATTTCAAATTAGGTTCATCTGACCAAAAATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17017</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>359779</contig_pos>
        <strand></strand>
        <context>AGAGAGATTT[G/T]TGGGCGGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATATGTCTTGAACACAATTTTTTTTGAATAGAATTCGTTAGAGAGATTT</left_flank>
        <right_flank>TGGGCGGATTATGTATCGAATAGATTTTTTTATTTCTTTTGGATTTTTCT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAAAATTTGTGAAATTTTATAGCTTTTAATTTTGTAGTTTACCTCTTTTAATTAAAATTTGATCTACCTAGTGAAAATGCGCCCTAATGACAACTAAATATCTGTCGAAACCAGAGCTGCGTATGATTTTGGATGGCTCATAACTCTCCTAATTTTTATTCAATTATGAAGACTTTTTTTTCAAAATGTGGGAAGATTTATGCCATTCATTTTTGCTGTTATACACTTTTAAAGAAAATTTGATCTAAGCTGTGAAAATGCGCTCTAATGAAACCCTACAAAACTCTTGTTGGTTTTTGGCCTAAAATTCTGATGACGTCAATTTCTTTTTCCTAGATTTTTCTAAATCTTGTATTTCTTAAGACACAGAGAAAGTTCCAGATTTTTTCCAAGATTTGATTACGTCAGTAGTCCCTTCCCAAAAAGGATCAGAGATAATCCTCTGATAATATGTCTTGAACACAATTTTTTTTGAATAGAATTCGTTAGAGAGATTTGTGGGCGGATTATGTATCGAATAGATTTTTTTATTTCTTTTGGATTTTTCTAGAATTCCAGAATAACAATGAGCAATGAATAAATTCAGGGGAAAGGAAAACAAGGAAAAAGGAAAAAAGAAGCAACCCAATTTTCGAACAATCTTAACTATTGGAATATTGGCTAGAACTTTTTGAAAATGTACATAAATTGTGCAGAATTTTATTATCTACAATTTATTATTTAAACACTCTTCACAAAAATTAGATCTACCTAGTGAAAATGCGCTCTAATGACAGTATGTCATTTTTGACGTATAGAAATTGAGATGACCTATAACTTTTGTAGTTTTCAACCAATTCGAAAGATTTTTAGATCAAAAAGTGTAAAATATTATAATCAACAAATTTGCTGTAATACACTTTTTTATGAAGGTTTGACCGCCGTGGTGAAAATGTGCTCTTATGAGAATTCACCTTAATAATGGAATTTGGCATATAACTCTCCCATTTCTAAACCGA</canonical>
            <polymorphic>ATCAAAATTTGTGAAATTTTATAGCTTTTAATTTTGTAGTTTACCTCTTTTAATTAAAATTTGATCTACCTAGTGAAAATGCGCCCTAATGACAACTAAATATCTGTCGAAACCAGAGCTGCGTATGATTTTGGATGGCTCATAACTCTCCTAATTTTTATTCAATTATGAAGACTTTTTTTTCAAAATGTGGGAAGATTTATGCCATTCATTTTTGCTGTTATACACTTTTAAAGAAAATTTGATCTAAGCTGTGAAAATGCGCTCTAATGAAACCCTACAAAACTCTTGTTGGTTTTTGGCCTAAAATTCTGATGACGTCAATTTCTTTTTCCTAGATTTTTCTAAATCTTGTATTTCTTAAGACACAGAGAAAGTTCCAGATTTTTTCCAAGATTTGATTACGTCAGTAGTCCCTTCCCAAAAAGGATCAGAGATAATCCTCTGATAATATGTCTTGAACACAATTTTTTTTGAATAGAATTCGTTAGAGAGATTTKTGGGCGGATTATGTATCGAATAGATTTTTTTATTTCTTTTGGATTTTTCTAGAATTCCAGAATAACAATGAGCAATGAATAAATTCAGGGGAAAGGAAAACAAGGAAAAAGGAAAAAAGAAGCAACCCAATTTTCGAACAATCTTAACTATTGGAATATTGGCTAGAACTTTTTGAAAATGTACATAAATTGTGCAGAATTTTATTATCTACAATTTATTATTTAAACACTCTTCACAAAAATTAGATCTACCTAGTGAAAATGCGCTCTAATGACAGTATGTCATTTTTGACGTATAGAAATTGAGATGACCTATAACTTTTGTAGTTTTCAACCAATTCGAAAGATTTTTAGATCAAAAAGTGTAAAATATTATAATCAACAAATTTGCTGTAATACACTTTTTTATGAAGGTTTGACCGCCGTGGTGAAAATGTGCTCTTATGAGAATTCACCTTAATAATGGAATTTGGCATATAACTCTCCCATTTCTAAACCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>192 117 112 107 96 62 46 38 35 35 35 29 27 22 16 13 8 7 3</canonical_bands>
                <polymorphic_bands>230 117 112 107 96 62 46 35 35 35 29 27 22 16 13 8 7 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGATGACGTCAATTTCTT</pcr_primer_p1>
		<pcr_primer_p2>GGAATTCTAGAAAAATCCAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGATGACGTCAATTTCTTTTTCCTAGATTTTTCTAAATCTTGTATTTCTTAAGACACAGAGAAAGTTCCAGATTTTTTCCAAGATTTGATTACGTCAGTAGTCCCTTCCCAAAAAGGATCAGAGATAATCCTCTGATAATATGTCTTGAACACAATTTTTTTTGAATAGAATTCGTTAGAGAGATTTGTGGGCGGATTATGTATCGAATAGATTTTTTTATTTCTTTTGGATTTTTCTAGAATTCC</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGATGACGTCAATTTCTTTTTCCTAGATTTTTCTAAATCTTGTATTTCTTAAGACACAGAGAAAGTTCCAGATTTTTTCCAAGATTTGATTACGTCAGTAGTCCCTTCCCAAAAAGGATCAGAGATAATCCTCTGATAATATGTCTTGAACACAATTTTTTTTGAATAGAATTCGTTAGAGAGATTTKTGGGCGGATTATGTATCGAATAGATTTTTTTATTTCTTTTGGATTTTTCTAGAATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17018</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>566037</contig_pos>
        <strand>+</strand>
        <context>GCGGCAGGCG[A/G]CGGGGTTTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTGAAGAAGAAGCTGACGTCTTCTACTCCCCTCCAGCTGCGGCAGGCG</left_flank>
        <right_flank>CGGGGTTTAGTACACAGAAGAGGGAGAATTATATGTAAAGCTTGTGGCGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATCGAAAAGTCAGGAACTCATTTTGAAGCTGAAAATCTAGACTTCGAAATTTGAATTTCTAGAAGATGCTGAAATTCGGAATTTTCAATTTTTTTTAGAAAATCGGAAATTTCAAATTTCAAGCTTTGGATTGTAAACATCCGGATCCTGAATTCTTCGATTCTAGAATCCTAATCATTATCAAAAGATCAGACGCCTCAACAAGCAAAATAGAAAAAAACTGCAAAAGTGGCAACAACACAGATAAGCCGAAACGGCAACACACAGGAGAGGTCTACGGATCACGTATATCGGAAGAAGAAGAAGAAGGAAAAAAAGATGGTGTGAGAAAAGAAGAAGAAGAAGCGATTGGCAGTATAGATACACATACACAGCAGCAGCAGCGCGGCAGGGATAGTCCAGGCAGGATTCGATGCGGAAAACCCGATGGAGAGGGAGAATCTGGATTTCTGAAGAAGAAGCTGACGTCTTCTACTCCCCTCCAGCTGCGGCAGGCGACGGGGTTTAGTACACAGAAGAGGGAGAATTATATGTAAAGCTTGTGGCGTTATGCTTCGTGATTATTCTCCGATATATTCAACATGTGTAATACCTGAATAAAGCGCGGTGGCGGGATCTGGTTAGCCTATCCCCACCGCTGCTGCCTCCTAATCATAAAAGGCATTACGGTCACTCTGGCGATATCCATAAAAAAGCGGCGAACACTTTTTTTTGGGAAGTGTGGTCACCACACACTTTTTTTGATGAATATCTCCTGATTACGCTAGATGTAGTGACCGTAATGCATTAGGCCAACTATGCTAGCTTGTTGGGCAATCGTTTTTTTTCCGCAAAGAAGGAGGAGGAGAAGGAGTGATTTTTGGAATAATGATGGAGTTTTAATGACCATATATAAAGAGGGGTCGGGTTTGATGAATGAAAACTTTGGTGTTTTGGGACTGGACGGCAAGAAGTCAGGAAATTTGATTTCAAATGAAGGGAGAGAAAATACCCCGAAC</canonical>
            <polymorphic>AAATCGAAAAGTCAGGAACTCATTTTGAAGCTGAAAATCTAGACTTCGAAATTTGAATTTCTAGAAGATGCTGAAATTCGGAATTTTCAATTTTTTTTAGAAAATCGGAAATTTCAAATTTCAAGCTTTGGATTGTAAACATCCGGATCCTGAATTCTTCGATTCTAGAATCCTAATCATTATCAAAAGATCAGACGCCTCAACAAGCAAAATAGAAAAAAACTGCAAAAGTGGCAACAACACAGATAAGCCGAAACGGCAACACACAGGAGAGGTCTACGGATCACGTATATCGGAAGAAGAAGAAGAAGGAAAAAAAGATGGTGTGAGAAAAGAAGAAGAAGAAGCGATTGGCAGTATAGATACACATACACAGCAGCAGCAGCGCGGCAGGGATAGTCCAGGCAGGATTCGATGCGGAAAACCCGATGGAGAGGGAGAATCTGGATTTCTGAAGAAGAAGCTGACGTCTTCTACTCCCCTCCAGCTGCGGCAGGCGRCGGGGTTTAGTACACAGAAGAGGGAGAATTATATGTAAAGCTTGTGGCGTTATGCTTCGTGATTATTCTCCGATATATTCAACATGTGTAATACCTGAATAAAGCGCGGTGGCGGGATCTGGTTAGCCTATCCCCACCGCTGCTGCCTCCTAATCATAAAAGGCATTACGGTCACTCTGGCGATATCCATAAAAAAGCGGCGAACACTTTTTTTTGGGAAGTGTGGTCACCACACACTTTTTTTGATGAATATCTCCTGATTACGCTAGATGTAGTGACCGTAATGCATTAGGCCAACTATGCTAGCTTGTTGGGCAATCGTTTTTTTTCCGCAAAGAAGGAGGAGGAGAAGGAGTGATTTTTGGAATAATGATGGAGTTTTAATGACCATATATAAAGAGGGGTCGGGTTTGATGAATGAAAACTTTGGTGTTTTGGGACTGGACGGCAAGAAGTCAGGAAATTTGATTTCAAATGAAGGGAGAGAAAATACCCCGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATTGGCAGTATAGATACACA</pcr_primer_p1>
		<pcr_primer_p2>ACACATGTTGAATATATCGGAGA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CGATTGGCAGTATAGATACACATACACAGCAGCAGCAGCGCGGCAGGGATAGTCCAGGCAGGATTCGATGCGGAAAACCCGATGGAGAGGGAGAATCTGGATTTCTGAAGAAGAAGCTGACGTCTTCTACTCCCCTCCAGCTGCGGCAGGCGACGGGGTTTAGTACACAGAAGAGGGAGAATTATATGTAAAGCTTGTGGCGTTATGCTTCGTGATTATTCTCCGATATATTCAACATGTGT</canonical_amplicon>
		<polymorphic_amplicon>CGATTGGCAGTATAGATACACATACACAGCAGCAGCAGCGCGGCAGGGATAGTCCAGGCAGGATTCGATGCGGAAAACCCGATGGAGAGGGAGAATCTGGATTTCTGAAGAAGAAGCTGACGTCTTCTACTCCCCTCCAGCTGCGGCAGGCGRCGGGGTTTAGTACACAGAAGAGGGAGAATTATATGTAAAGCTTGTGGCGTTATGCTTCGTGATTATTCTCCGATATATTCAACATGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17043</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>650769</contig_pos>
        <strand>+</strand>
        <context>TTAGATACTG[G/T]TGGTTCTAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTG</left_flank>
        <right_flank>TGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGG</right_flank>
        <qual_score>145</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTCTAATCATGTTTTATAGAAACTAAAAATTTCAGAAAAATCAGCCAAATTTGAGTAATTATTTTTAAAGATTGAAGTGGGCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTACAAAATCGCTATGAAGCCAACAAATGAATAAGCGAAAAGACCATTAACACGAAACACAAAACAATAAATCAGCTTTTTCTTCTTTTTCATGTCCTTATCACCTAGCCGTGGGCCGTCTATCAAA</canonical>
            <polymorphic>AGCTCTAATCATGTTTTATAGAAACTAAAAATTTCAGAAAAATCAGCCAAATTTGAGTAATTATTTTTAAAGATTGAAGTGGGCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGKTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTACAAAATCGCTATGAAGCCAACAAATGAATAAGCGAAAAGACCATTAACACGAAACACAAAACAATAAATCAGCTTTTTCTTCTTTTTCATGTCCTTATCACCTAGCCGTGGGCCGTCTATCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>287 282 216 146 57 12</canonical_bands>
                <polymorphic_bands>503 282 146 57 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGACCTCTAAAAGAATCAAT</pcr_primer_p1>
		<pcr_primer_p2>AGCCTAGTTTTTACAATGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>512</pcr_amplicon_size>
		<canonical_amplicon>GCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCT</canonical_amplicon>
		<polymorphic_amplicon>GCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGKTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17044</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>650832</contig_pos>
        <strand>+</strand>
        <context>CTAGTTGAAG[C/T]TTGCTATAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAG</left_flank>
        <right_flank>TTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTAAAGATTGAAGTGGGCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTACAAAATCGCTATGAAGCCAACAAATGAATAAGCGAAAAGACCATTAACACGAAACACAAAACAATAAATCAGCTTTTTCTTCTTTTTCATGTCCTTATCACCTAGCCGTGGGCCGTCTATCAAAAGACACAATTGTTGCAACAAATTAATGACGCATTCCTCGCTTTTCCTTTCTTTTCTCCTGCCT</canonical>
            <polymorphic>TTTTTAAAGATTGAAGTGGGCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGYTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTACAAAATCGCTATGAAGCCAACAAATGAATAAGCGAAAAGACCATTAACACGAAACACAAAACAATAAATCAGCTTTTTCTTCTTTTTCATGTCCTTATCACCTAGCCGTGGGCCGTCTATCAAAAGACACAATTGTTGCAACAAATTAATGACGCATTCCTCGCTTTTCCTTTCTTTTCTCCTGCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>330 191 178 130 115 56</canonical_bands>
                <polymorphic_bands>330 234 191 130 115</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>191 123 120 85 75 68 58 56 45 44 33 30 26 20 14 7 5</canonical_bands>
                <polymorphic_bands>191 150 123 85 75 68 58 56 45 44 33 26 20 14 7 5</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGACCTCTAAAAGAATCAAT</pcr_primer_p1>
		<pcr_primer_p2>TAGTTCTTTTCACAGGGGTTACT</pcr_primer_p2>
		<pcr_amplicon_size>794</pcr_amplicon_size>
		<canonical_amplicon>GCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTA</canonical_amplicon>
		<polymorphic_amplicon>GCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGYTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17045</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>650911</contig_pos>
        <strand>+</strand>
        <context>AGTGGGCCGG[C/T]YYTAACATGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGG</left_flank>
        <right_flank>TCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTACAAAATCGCTATGAAGCCAACAAATGAATAAGCGAAAAGACCATTAACACGAAACACAAAACAATAAATCAGCTTTTTCTTCTTTTTCATGTCCTTATCACCTAGCCGTGGGCCGTCTATCAAAAGACACAATTGTTGCAACAAATTAATGACGCATTCCTCGCTTTTCCTTTCTTTTCTCCTGCCTTTATTGTCTACCTTCCCAAAACCCCAATCATCAGAAGACTCCTCCTCTGTGTCTACCCCCCGAAATTCTTGGACCCCCC</canonical>
            <polymorphic>AACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGYTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTACAAAATCGCTATGAAGCCAACAAATGAATAAGCGAAAAGACCATTAACACGAAACACAAAACAATAAATCAGCTTTTTCTTCTTTTTCATGTCCTTATCACCTAGCCGTGGGCCGTCTATCAAAAGACACAATTGTTGCAACAAATTAATGACGCATTCCTCGCTTTTCCTTTCTTTTCTCCTGCCTTTATTGTCTACCTTCCCAAAACCCCAATCATCAGAAGACTCCTCCTCTGTGTCTACCCCCCGAAATTCTTGGACCCCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTAGGCTTAGCGACTCATA</pcr_primer_p1>
		<pcr_primer_p2>TAGTTCTTTTCACAGGGGTTACT</pcr_primer_p2>
		<pcr_amplicon_size>292</pcr_amplicon_size>
		<canonical_amplicon>AAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTA</canonical_amplicon>
		<polymorphic_amplicon>AAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGYTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17046</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>650912</contig_pos>
        <strand>+</strand>
        <context>GTGGGCCGGY[C/T]YTAACATGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGT</left_flank>
        <right_flank>CTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTACAAAATCGCTATGAAGCCAACAAATGAATAAGCGAAAAGACCATTAACACGAAACACAAAACAATAAATCAGCTTTTTCTTCTTTTTCATGTCCTTATCACCTAGCCGTGGGCCGTCTATCAAAAGACACAATTGTTGCAACAAATTAATGACGCATTCCTCGCTTTTCCTTTCTTTTCTCCTGCCTTTATTGTCTACCTTCCCAAAACCCCAATCATCAGAAGACTCCTCCTCTGTGTCTACCCCCCGAAATTCTTGGACCCCCCT</canonical>
            <polymorphic>ACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTYCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTACAAAATCGCTATGAAGCCAACAAATGAATAAGCGAAAAGACCATTAACACGAAACACAAAACAATAAATCAGCTTTTTCTTCTTTTTCATGTCCTTATCACCTAGCCGTGGGCCGTCTATCAAAAGACACAATTGTTGCAACAAATTAATGACGCATTCCTCGCTTTTCCTTTCTTTTCTCCTGCCTTTATTGTCTACCTTCCCAAAACCCCAATCATCAGAAGACTCCTCCTCTGTGTCTACCCCCCGAAATTCTTGGACCCCCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTAGGCTTAGCGACTCATA</pcr_primer_p1>
		<pcr_primer_p2>TAGTTCTTTTCACAGGGGTTACT</pcr_primer_p2>
		<pcr_amplicon_size>292</pcr_amplicon_size>
		<canonical_amplicon>AAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTA</canonical_amplicon>
		<polymorphic_amplicon>AAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTYCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17047</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>650913</contig_pos>
        <strand>+</strand>
        <context>TGGGCCGGYY[C/T]TAACATGTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTT</left_flank>
        <right_flank>TAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTACAAAATCGCTATGAAGCCAACAAATGAATAAGCGAAAAGACCATTAACACGAAACACAAAACAATAAATCAGCTTTTTCTTCTTTTTCATGTCCTTATCACCTAGCCGTGGGCCGTCTATCAAAAGACACAATTGTTGCAACAAATTAATGACGCATTCCTCGCTTTTCCTTTCTTTTCTCCTGCCTTTATTGTCTACCTTCCCAAAACCCCAATCATCAGAAGACTCCTCCTCTGTGTCTACCCCCCGAAATTCTTGGACCCCCCTT</canonical>
            <polymorphic>CTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTYTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTACAAAATCGCTATGAAGCCAACAAATGAATAAGCGAAAAGACCATTAACACGAAACACAAAACAATAAATCAGCTTTTTCTTCTTTTTCATGTCCTTATCACCTAGCCGTGGGCCGTCTATCAAAAGACACAATTGTTGCAACAAATTAATGACGCATTCCTCGCTTTTCCTTTCTTTTCTCCTGCCTTTATTGTCTACCTTCCCAAAACCCCAATCATCAGAAGACTCCTCCTCTGTGTCTACCCCCCGAAATTCTTGGACCCCCCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTAGGCTTAGCGACTCATA</pcr_primer_p1>
		<pcr_primer_p2>TAGTTCTTTTCACAGGGGTTACT</pcr_primer_p2>
		<pcr_amplicon_size>292</pcr_amplicon_size>
		<canonical_amplicon>AAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTA</canonical_amplicon>
		<polymorphic_amplicon>AAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTYTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17052</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>650929</contig_pos>
        <strand>+</strand>
        <context>TGTTGAAGAT[A/G]ATCCcaattt</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGAT</left_flank>
        <right_flank>ATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAA</right_flank>
        <qual_score>134</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTACAAAATCGCTATGAAGCCAACAAATGAATAAGCGAAAAGACCATTAACACGAAACACAAAACAATAAATCAGCTTTTTCTTCTTTTTCATGTCCTTATCACCTAGCCGTGGGCCGTCTATCAAAAGACACAATTGTTGCAACAAATTAATGACGCATTCCTCGCTTTTCCTTTCTTTTCTCCTGCCTTTATTGTCTACCTTCCCAAAACCCCAATCATCAGAAGACTCCTCCTCTGTGTCTACCCCCCGAAATTCTTGGACCCCCCTTTCTCTAGCCACCCTCT</canonical>
            <polymorphic>GAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATRATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTACAAAATCGCTATGAAGCCAACAAATGAATAAGCGAAAAGACCATTAACACGAAACACAAAACAATAAATCAGCTTTTTCTTCTTTTTCATGTCCTTATCACCTAGCCGTGGGCCGTCTATCAAAAGACACAATTGTTGCAACAAATTAATGACGCATTCCTCGCTTTTCCTTTCTTTTCTCCTGCCTTTATTGTCTACCTTCCCAAAACCCCAATCATCAGAAGACTCCTCCTCTGTGTCTACCCCCCGAAATTCTTGGACCCCCCTTTCTCTAGCCACCCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>501 258 241</canonical_bands>
                <polymorphic_bands>742 258</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTAGGCTTAGCGACTCATA</pcr_primer_p1>
		<pcr_primer_p2>TAGTTCTTTTCACAGGGGTTACT</pcr_primer_p2>
		<pcr_amplicon_size>292</pcr_amplicon_size>
		<canonical_amplicon>AAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTA</canonical_amplicon>
		<polymorphic_amplicon>AAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATRATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17053</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>652432</contig_pos>
        <strand>+</strand>
        <context>CTCTCAATCT[C/G]TTTTTGCTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGTCTTTCAATCTGGAACTTGTTGGTTCGACTCCCACCACCTCTCAATCT</left_flank>
        <right_flank>TTTTTGCTTTCTTTTTTAATCAATTAAGATTTAATTCAGGCTCAACAGTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCAGATGTGTAAGTTTTAAGGGTTCAATTTGAAAACTTTTTGTTATTTTTAGTGAAATCTCGATCTACGACATCTTCTAGTGGAAAAACATCGAATGGCGAATATTCTGGCGAGCGAATCAGGGCGAAAAGTGTGAAAGCCGTTGAAGAAGACATTCCCCCAGTACCATTTGGAATACCACCGTTAGAAGTCAATGGTTTGTATCGGGACGATGGTTTGGATGAGGAGGAGCACTATAGCGATATGGATTGGTTAGTAAAAAAGAGGCAAAATAGATTTGAGAGGGGGAGGAGTCGAACTTTGGTGTTGAGATTGGTAGACAAGTTTCTTACCAGTTGCGCTATACCGGCGCGCGCGGCTACGCCCAATGTTTTGATATAAGAAAAACCCGAACGACAGTGGTGGCTGGCTCCCACTGTCCTCATTGTGGCGCAATGGTAGCAGCTCTGTCTTTCAATCTGGAACTTGTTGGTTCGACTCCCACCACCTCTCAATCTGTTTTTGCTTTCTTTTTTAATCAATTAAGATTTAATTCAGGCTCAACAGTCAACGTTCAAGCAGATTCCCAGAGGAACCCATACCGAAATCTGCACCTGTCAAGTCCAAAACTCCAGAAGTTCCGAAATCTGTGAAATTTTCGGAACCAGTCAAAAAAATAGCTTCAAGAGCGAGACCGATTCAGAAATCTGATGCTCAGATTCAAACTGATCAGTTGGTGTTGAAGAAGGATGAGCAAGAAGAGAATTTGAAGAAAACTAGTGGGAGGAGTGAGAAAATTGTAAGTTTTTAATTTGAGCCTAAATAACTCGGTTCCTGTGAAAGATATCAAGAAGTAGTAAACTGCCAAAATATTGGAAATTTTATAACAAACATTTTGTTAGTTAACCACTTTTTGATATCTCTTGTAAAAACTGAGATAATAAAGCTCAACGTAAGCTACTTGGTCGGCGTCACCACTATGCTTGCACTTTAAGCTCTACTATCTAGATTTCTGTAAG</canonical>
            <polymorphic>AGCCAGATGTGTAAGTTTTAAGGGTTCAATTTGAAAACTTTTTGTTATTTTTAGTGAAATCTCGATCTACGACATCTTCTAGTGGAAAAACATCGAATGGCGAATATTCTGGCGAGCGAATCAGGGCGAAAAGTGTGAAAGCCGTTGAAGAAGACATTCCCCCAGTACCATTTGGAATACCACCGTTAGAAGTCAATGGTTTGTATCGGGACGATGGTTTGGATGAGGAGGAGCACTATAGCGATATGGATTGGTTAGTAAAAAAGAGGCAAAATAGATTTGAGAGGGGGAGGAGTCGAACTTTGGTGTTGAGATTGGTAGACAAGTTTCTTACCAGTTGCGCTATACCGGCGCGCGCGGCTACGCCCAATGTTTTGATATAAGAAAAACCCGAACGACAGTGGTGGCTGGCTCCCACTGTCCTCATTGTGGCGCAATGGTAGCAGCTCTGTCTTTCAATCTGGAACTTGTTGGTTCGACTCCCACCACCTCTCAATCTSTTTTTGCTTTCTTTTTTAATCAATTAAGATTTAATTCAGGCTCAACAGTCAACGTTCAAGCAGATTCCCAGAGGAACCCATACCGAAATCTGCACCTGTCAAGTCCAAAACTCCAGAAGTTCCGAAATCTGTGAAATTTTCGGAACCAGTCAAAAAAATAGCTTCAAGAGCGAGACCGATTCAGAAATCTGATGCTCAGATTCAAACTGATCAGTTGGTGTTGAAGAAGGATGAGCAAGAAGAGAATTTGAAGAAAACTAGTGGGAGGAGTGAGAAAATTGTAAGTTTTTAATTTGAGCCTAAATAACTCGGTTCCTGTGAAAGATATCAAGAAGTAGTAAACTGCCAAAATATTGGAAATTTTATAACAAACATTTTGTTAGTTAACCACTTTTTGATATCTCTTGTAAAAACTGAGATAATAAAGCTCAACGTAAGCTACTTGGTCGGCGTCACCACTATGCTTGCACTTTAAGCTCTACTATCTAGATTTCTGTAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGCAGCTCTGTCTTTCAATCT</pcr_primer_p1>
		<pcr_primer_p2>ATCAGATTTCTGAATCGGTCT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TAGCAGCTCTGTCTTTCAATCTGGAACTTGTTGGTTCGACTCCCACCACCTCTCAATCTGTTTTTGCTTTCTTTTTTAATCAATTAAGATTTAATTCAGGCTCAACAGTCAACGTTCAAGCAGATTCCCAGAGGAACCCATACCGAAATCTGCACCTGTCAAGTCCAAAACTCCAGAAGTTCCGAAATCTGTGAAATTTTCGGAACCAGTCAAAAAAATAGCTTCAAGAGCGAGACCGATTCAGAAATCTGAT</canonical_amplicon>
		<polymorphic_amplicon>TAGCAGCTCTGTCTTTCAATCTGGAACTTGTTGGTTCGACTCCCACCACCTCTCAATCTSTTTTTGCTTTCTTTTTTAATCAATTAAGATTTAATTCAGGCTCAACAGTCAACGTTCAAGCAGATTCCCAGAGGAACCCATACCGAAATCTGCACCTGTCAAGTCCAAAACTCCAGAAGTTCCGAAATCTGTGAAATTTTCGGAACCAGTCAAAAAAATAGCTTCAAGAGCGAGACCGATTCAGAAATCTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17054</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>652397</contig_pos>
        <strand>+</strand>
        <context>TTCAATCTGG[A/C]ACTTGTTGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCACTGTCCTCATTGTGGCGCAATGGTAGCAGCTCTGTCTTTCAATCTGG</left_flank>
        <right_flank>ACTTGTTGGTTCGACTCCCACCACCTCTCAATCTGTTTTTGCTTTCTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCCCAGCTAAACGGTCAACAACTCAAATGTGTCAGCCAGATGTGTAAGTTTTAAGGGTTCAATTTGAAAACTTTTTGTTATTTTTAGTGAAATCTCGATCTACGACATCTTCTAGTGGAAAAACATCGAATGGCGAATATTCTGGCGAGCGAATCAGGGCGAAAAGTGTGAAAGCCGTTGAAGAAGACATTCCCCCAGTACCATTTGGAATACCACCGTTAGAAGTCAATGGTTTGTATCGGGACGATGGTTTGGATGAGGAGGAGCACTATAGCGATATGGATTGGTTAGTAAAAAAGAGGCAAAATAGATTTGAGAGGGGGAGGAGTCGAACTTTGGTGTTGAGATTGGTAGACAAGTTTCTTACCAGTTGCGCTATACCGGCGCGCGCGGCTACGCCCAATGTTTTGATATAAGAAAAACCCGAACGACAGTGGTGGCTGGCTCCCACTGTCCTCATTGTGGCGCAATGGTAGCAGCTCTGTCTTTCAATCTGGAACTTGTTGGTTCGACTCCCACCACCTCTCAATCTGTTTTTGCTTTCTTTTTTAATCAATTAAGATTTAATTCAGGCTCAACAGTCAACGTTCAAGCAGATTCCCAGAGGAACCCATACCGAAATCTGCACCTGTCAAGTCCAAAACTCCAGAAGTTCCGAAATCTGTGAAATTTTCGGAACCAGTCAAAAAAATAGCTTCAAGAGCGAGACCGATTCAGAAATCTGATGCTCAGATTCAAACTGATCAGTTGGTGTTGAAGAAGGATGAGCAAGAAGAGAATTTGAAGAAAACTAGTGGGAGGAGTGAGAAAATTGTAAGTTTTTAATTTGAGCCTAAATAACTCGGTTCCTGTGAAAGATATCAAGAAGTAGTAAACTGCCAAAATATTGGAAATTTTATAACAAACATTTTGTTAGTTAACCACTTTTTGATATCTCTTGTAAAAACTGAGATAATAAAGCTCAACGTAAGCTACTTGGTCGGCGTCACCACTATGCT</canonical>
            <polymorphic>TATCCCAGCTAAACGGTCAACAACTCAAATGTGTCAGCCAGATGTGTAAGTTTTAAGGGTTCAATTTGAAAACTTTTTGTTATTTTTAGTGAAATCTCGATCTACGACATCTTCTAGTGGAAAAACATCGAATGGCGAATATTCTGGCGAGCGAATCAGGGCGAAAAGTGTGAAAGCCGTTGAAGAAGACATTCCCCCAGTACCATTTGGAATACCACCGTTAGAAGTCAATGGTTTGTATCGGGACGATGGTTTGGATGAGGAGGAGCACTATAGCGATATGGATTGGTTAGTAAAAAAGAGGCAAAATAGATTTGAGAGGGGGAGGAGTCGAACTTTGGTGTTGAGATTGGTAGACAAGTTTCTTACCAGTTGCGCTATACCGGCGCGCGCGGCTACGCCCAATGTTTTGATATAAGAAAAACCCGAACGACAGTGGTGGCTGGCTCCCACTGTCCTCATTGTGGCGCAATGGTAGCAGCTCTGTCTTTCAATCTGGMACTTGTTGGTTCGACTCCCACCACCTCTCAATCTGTTTTTGCTTTCTTTTTTAATCAATTAAGATTTAATTCAGGCTCAACAGTCAACGTTCAAGCAGATTCCCAGAGGAACCCATACCGAAATCTGCACCTGTCAAGTCCAAAACTCCAGAAGTTCCGAAATCTGTGAAATTTTCGGAACCAGTCAAAAAAATAGCTTCAAGAGCGAGACCGATTCAGAAATCTGATGCTCAGATTCAAACTGATCAGTTGGTGTTGAAGAAGGATGAGCAAGAAGAGAATTTGAAGAAAACTAGTGGGAGGAGTGAGAAAATTGTAAGTTTTTAATTTGAGCCTAAATAACTCGGTTCCTGTGAAAGATATCAAGAAGTAGTAAACTGCCAAAATATTGGAAATTTTATAACAAACATTTTGTTAGTTAACCACTTTTTGATATCTCTTGTAAAAACTGAGATAATAAAGCTCAACGTAAGCTACTTGGTCGGCGTCACCACTATGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>254 164 152 146 136 96 52</canonical_bands>
                <polymorphic_bands>406 164 146 136 96 52</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATAAGAAAAACCCGAACGAC</pcr_primer_p1>
		<pcr_primer_p2>GAACTTCTGGAGTTTTGGACT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TATAAGAAAAACCCGAACGACAGTGGTGGCTGGCTCCCACTGTCCTCATTGTGGCGCAATGGTAGCAGCTCTGTCTTTCAATCTGGAACTTGTTGGTTCGACTCCCACCACCTCTCAATCTGTTTTTGCTTTCTTTTTTAATCAATTAAGATTTAATTCAGGCTCAACAGTCAACGTTCAAGCAGATTCCCAGAGGAACCCATACCGAAATCTGCACCTGTCAAGTCCAAAACTCCAGAAGTTC</canonical_amplicon>
		<polymorphic_amplicon>TATAAGAAAAACCCGAACGACAGTGGTGGCTGGCTCCCACTGTCCTCATTGTGGCGCAATGGTAGCAGCTCTGTCTTTCAATCTGGMACTTGTTGGTTCGACTCCCACCACCTCTCAATCTGTTTTTGCTTTCTTTTTTAATCAATTAAGATTTAATTCAGGCTCAACAGTCAACGTTCAAGCAGATTCCCAGAGGAACCCATACCGAAATCTGCACCTGTCAAGTCCAAAACTCCAGAAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17055</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>652304</contig_pos>
        <strand></strand>
        <context>WACGCCCAAT[G/A]RTTTGATATA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACAAGTTTCTTACCAGTTGCGCTATACCGGCGCGCGCGGCTACGCCCAAT</left_flank>
        <right_flank>TTTTGATATAAGAAAAACCCGAACGACAGTGGTGGCTGGCTCCCACTGTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACTCCGGTTTCGATGGTTTCCTGAAACTCCAAGAAGACATCAAAGAATCTCTCAGGAATTTTATGCGATTCGGGCAAAAGTCCGATTTATTATCCCAGCTAAACGGTCAACAACTCAAATGTGTCAGCCAGATGTGTAAGTTTTAAGGGTTCAATTTGAAAACTTTTTGTTATTTTTAGTGAAATCTCGATCTACGACATCTTCTAGTGGAAAAACATCGAATGGCGAATATTCTGGCGAGCGAATCAGGGCGAAAAGTGTGAAAGCCGTTGAAGAAGACATTCCCCCAGTACCATTTGGAATACCACCGTTAGAAGTCAATGGTTTGTATCGGGACGATGGTTTGGATGAGGAGGAGCACTATAGCGATATGGATTGGTTAGTAAAAAAGAGGCAAAATAGATTTGAGAGGGGGAGGAGTCGAACTTTGGTGTTGAGATTGGTAGACAAGTTTCTTACCAGTTGCGCTATACCGGCGCGCGCGGCTACGCCCAATGTTTTGATATAAGAAAAACCCGAACGACAGTGGTGGCTGGCTCCCACTGTCCTCATTGTGGCGCAATGGTAGCAGCTCTGTCTTTCAATCTGGAACTTGTTGGTTCGACTCCCACCACCTCTCAATCTGTTTTTGCTTTCTTTTTTAATCAATTAAGATTTAATTCAGGCTCAACAGTCAACGTTCAAGCAGATTCCCAGAGGAACCCATACCGAAATCTGCACCTGTCAAGTCCAAAACTCCAGAAGTTCCGAAATCTGTGAAATTTTCGGAACCAGTCAAAAAAATAGCTTCAAGAGCGAGACCGATTCAGAAATCTGATGCTCAGATTCAAACTGATCAGTTGGTGTTGAAGAAGGATGAGCAAGAAGAGAATTTGAAGAAAACTAGTGGGAGGAGTGAGAAAATTGTAAGTTTTTAATTTGAGCCTAAATAACTCGGTTCCTGTGAAAGATATCAAGAAGTAGTAAACTGCCAAAATATTGGAAATTTTATAACAAA</canonical>
            <polymorphic>AAAACTCCGGTTTCGATGGTTTCCTGAAACTCCAAGAAGACATCAAAGAATCTCTCAGGAATTTTATGCGATTCGGGCAAAAGTCCGATTTATTATCCCAGCTAAACGGTCAACAACTCAAATGTGTCAGCCAGATGTGTAAGTTTTAAGGGTTCAATTTGAAAACTTTTTGTTATTTTTAGTGAAATCTCGATCTACGACATCTTCTAGTGGAAAAACATCGAATGGCGAATATTCTGGCGAGCGAATCAGGGCGAAAAGTGTGAAAGCCGTTGAAGAAGACATTCCCCCAGTACCATTTGGAATACCACCGTTAGAAGTCAATGGTTTGTATCGGGACGATGGTTTGGATGAGGAGGAGCACTATAGCGATATGGATTGGTTAGTAAAAAAGAGGCAAAATAGATTTGAGAGGGGGAGGAGTCGAACTTTGGTGTTGAGATTGGTAGACAAGTTTCTTACCAGTTGCGCTATACCGGCGCGCGCGGCTACGCCCAATRTTTTGATATAAGAAAAACCCGAACGACAGTGGTGGCTGGCTCCCACTGTCCTCATTGTGGCGCAATGGTAGCAGCTCTGTCTTTCAATCTGGAACTTGTTGGTTCGACTCCCACCACCTCTCAATCTGTTTTTGCTTTCTTTTTTAATCAATTAAGATTTAATTCAGGCTCAACAGTCAACGTTCAAGCAGATTCCCAGAGGAACCCATACCGAAATCTGCACCTGTCAAGTCCAAAACTCCAGAAGTTCCGAAATCTGTGAAATTTTCGGAACCAGTCAAAAAAATAGCTTCAAGAGCGAGACCGATTCAGAAATCTGATGCTCAGATTCAAACTGATCAGTTGGTGTTGAAGAAGGATGAGCAAGAAGAGAATTTGAAGAAAACTAGTGGGAGGAGTGAGAAAATTGTAAGTTTTTAATTTGAGCCTAAATAACTCGGTTCCTGTGAAAGATATCAAGAAGTAGTAAACTGCCAAAATATTGGAAATTTTATAACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTATAGCGATATGGATTGGTTA</pcr_primer_p1>
		<pcr_primer_p2>AGATTGAAAGACAGAGCTGCTA</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>ACTATAGCGATATGGATTGGTTAGTAAAAAAGAGGCAAAATAGATTTGAGAGGGGGAGGAGTCGAACTTTGGTGTTGAGATTGGTAGACAAGTTTCTTACCAGTTGCGCTATACCGGCGCGCGCGGCTACGCCCAATGTTTTGATATAAGAAAAACCCGAACGACAGTGGTGGCTGGCTCCCACTGTCCTCATTGTGGCGCAATGGTAGCAGCTCTGTCTTTCAATCT</canonical_amplicon>
		<polymorphic_amplicon>ACTATAGCGATATGGATTGGTTAGTAAAAAAGAGGCAAAATAGATTTGAGAGGGGGAGGAGTCGAACTTTGGTGTTGAGATTGGTAGACAAGTTTCTTACCAGTTGCGCTATACCGGCGCGCGCGGCTACGCCCAATRTTTTGATATAAGAAAAACCCGAACGACAGTGGTGGCTGGCTCCCACTGTCCTCATTGTGGCGCAATGGTAGCAGCTCTGTCTTTCAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17056</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>652294</contig_pos>
        <strand>+</strand>
        <context>CGCGCGCGGC[A/T]ACGCCCAATR</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGATTGGTAGACAAGTTTCTTACCAGTTGCGCTATACCGGCGCGCGCGGC</left_flank>
        <right_flank>ACGCCCAATGTTTTGATATAAGAAAAACCCGAACGACAGTGGTGGCTGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATCTCGACAAAAACTCCGGTTTCGATGGTTTCCTGAAACTCCAAGAAGACATCAAAGAATCTCTCAGGAATTTTATGCGATTCGGGCAAAAGTCCGATTTATTATCCCAGCTAAACGGTCAACAACTCAAATGTGTCAGCCAGATGTGTAAGTTTTAAGGGTTCAATTTGAAAACTTTTTGTTATTTTTAGTGAAATCTCGATCTACGACATCTTCTAGTGGAAAAACATCGAATGGCGAATATTCTGGCGAGCGAATCAGGGCGAAAAGTGTGAAAGCCGTTGAAGAAGACATTCCCCCAGTACCATTTGGAATACCACCGTTAGAAGTCAATGGTTTGTATCGGGACGATGGTTTGGATGAGGAGGAGCACTATAGCGATATGGATTGGTTAGTAAAAAAGAGGCAAAATAGATTTGAGAGGGGGAGGAGTCGAACTTTGGTGTTGAGATTGGTAGACAAGTTTCTTACCAGTTGCGCTATACCGGCGCGCGCGGCTACGCCCAATGTTTTGATATAAGAAAAACCCGAACGACAGTGGTGGCTGGCTCCCACTGTCCTCATTGTGGCGCAATGGTAGCAGCTCTGTCTTTCAATCTGGAACTTGTTGGTTCGACTCCCACCACCTCTCAATCTGTTTTTGCTTTCTTTTTTAATCAATTAAGATTTAATTCAGGCTCAACAGTCAACGTTCAAGCAGATTCCCAGAGGAACCCATACCGAAATCTGCACCTGTCAAGTCCAAAACTCCAGAAGTTCCGAAATCTGTGAAATTTTCGGAACCAGTCAAAAAAATAGCTTCAAGAGCGAGACCGATTCAGAAATCTGATGCTCAGATTCAAACTGATCAGTTGGTGTTGAAGAAGGATGAGCAAGAAGAGAATTTGAAGAAAACTAGTGGGAGGAGTGAGAAAATTGTAAGTTTTTAATTTGAGCCTAAATAACTCGGTTCCTGTGAAAGATATCAAGAAGTAGTAAACTGCCAAAATATTGGAAATT</canonical>
            <polymorphic>GATCTCGACAAAAACTCCGGTTTCGATGGTTTCCTGAAACTCCAAGAAGACATCAAAGAATCTCTCAGGAATTTTATGCGATTCGGGCAAAAGTCCGATTTATTATCCCAGCTAAACGGTCAACAACTCAAATGTGTCAGCCAGATGTGTAAGTTTTAAGGGTTCAATTTGAAAACTTTTTGTTATTTTTAGTGAAATCTCGATCTACGACATCTTCTAGTGGAAAAACATCGAATGGCGAATATTCTGGCGAGCGAATCAGGGCGAAAAGTGTGAAAGCCGTTGAAGAAGACATTCCCCCAGTACCATTTGGAATACCACCGTTAGAAGTCAATGGTTTGTATCGGGACGATGGTTTGGATGAGGAGGAGCACTATAGCGATATGGATTGGTTAGTAAAAAAGAGGCAAAATAGATTTGAGAGGGGGAGGAGTCGAACTTTGGTGTTGAGATTGGTAGACAAGTTTCTTACCAGTTGCGCTATACCGGCGCGCGCGGCWACGCCCAATGTTTTGATATAAGAAAAACCCGAACGACAGTGGTGGCTGGCTCCCACTGTCCTCATTGTGGCGCAATGGTAGCAGCTCTGTCTTTCAATCTGGAACTTGTTGGTTCGACTCCCACCACCTCTCAATCTGTTTTTGCTTTCTTTTTTAATCAATTAAGATTTAATTCAGGCTCAACAGTCAACGTTCAAGCAGATTCCCAGAGGAACCCATACCGAAATCTGCACCTGTCAAGTCCAAAACTCCAGAAGTTCCGAAATCTGTGAAATTTTCGGAACCAGTCAAAAAAATAGCTTCAAGAGCGAGACCGATTCAGAAATCTGATGCTCAGATTCAAACTGATCAGTTGGTGTTGAAGAAGGATGAGCAAGAAGAGAATTTGAAGAAAACTAGTGGGAGGAGTGAGAAAATTGTAAGTTTTTAATTTGAGCCTAAATAACTCGGTTCCTGTGAAAGATATCAAGAAGTAGTAAACTGCCAAAATATTGGAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>219 139 137 121 111 94 64 47 35 29 4</canonical_bands>
                <polymorphic_bands>266 139 137 121 111 94 64 35 29 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTATAGCGATATGGATTGGTTA</pcr_primer_p1>
		<pcr_primer_p2>AGATTGAAAGACAGAGCTGCTA</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>ACTATAGCGATATGGATTGGTTAGTAAAAAAGAGGCAAAATAGATTTGAGAGGGGGAGGAGTCGAACTTTGGTGTTGAGATTGGTAGACAAGTTTCTTACCAGTTGCGCTATACCGGCGCGCGCGGCTACGCCCAATGTTTTGATATAAGAAAAACCCGAACGACAGTGGTGGCTGGCTCCCACTGTCCTCATTGTGGCGCAATGGTAGCAGCTCTGTCTTTCAATCT</canonical_amplicon>
		<polymorphic_amplicon>ACTATAGCGATATGGATTGGTTAGTAAAAAAGAGGCAAAATAGATTTGAGAGGGGGAGGAGTCGAACTTTGGTGTTGAGATTGGTAGACAAGTTTCTTACCAGTTGCGCTATACCGGCGCGCGCGGCWACGCCCAATGTTTTGATATAAGAAAAACCCGAACGACAGTGGTGGCTGGCTCCCACTGTCCTCATTGTGGCGCAATGGTAGCAGCTCTGTCTTTCAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17104</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>652207</contig_pos>
        <strand></strand>
        <context>AGAGGcaaaa[T/C]agatttgaga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAGGAGGAGCACTATAGCGATATGGATTGGTTAGTAAAAAAGAGGCAAAA</left_flank>
        <right_flank>AGATTTGAGAGGGGGAGGAGTCGAACTTTGGTGTTGAGATTGGTAGACAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGATTTTCATAATGCGTAAGTATTTTAAAGTGGCCTAGAAAACCTAAACCTCGGCCATTACAGTCTTCTCTCACTCCAAATGCCAGATCTCGACAAAAACTCCGGTTTCGATGGTTTCCTGAAACTCCAAGAAGACATCAAAGAATCTCTCAGGAATTTTATGCGATTCGGGCAAAAGTCCGATTTATTATCCCAGCTAAACGGTCAACAACTCAAATGTGTCAGCCAGATGTGTAAGTTTTAAGGGTTCAATTTGAAAACTTTTTGTTATTTTTAGTGAAATCTCGATCTACGACATCTTCTAGTGGAAAAACATCGAATGGCGAATATTCTGGCGAGCGAATCAGGGCGAAAAGTGTGAAAGCCGTTGAAGAAGACATTCCCCCAGTACCATTTGGAATACCACCGTTAGAAGTCAATGGTTTGTATCGGGACGATGGTTTGGATGAGGAGGAGCACTATAGCGATATGGATTGGTTAGTAAAAAAGAGGCAAAATAGATTTGAGAGGGGGAGGAGTCGAACTTTGGTGTTGAGATTGGTAGACAAGTTTCTTACCAGTTGCGCTATACCGGCGCGCGCGGCTACGCCCAATGTTTTGATATAAGAAAAACCCGAACGACAGTGGTGGCTGGCTCCCACTGTCCTCATTGTGGCGCAATGGTAGCAGCTCTGTCTTTCAATCTGGAACTTGTTGGTTCGACTCCCACCACCTCTCAATCTGTTTTTGCTTTCTTTTTTAATCAATTAAGATTTAATTCAGGCTCAACAGTCAACGTTCAAGCAGATTCCCAGAGGAACCCATACCGAAATCTGCACCTGTCAAGTCCAAAACTCCAGAAGTTCCGAAATCTGTGAAATTTTCGGAACCAGTCAAAAAAATAGCTTCAAGAGCGAGACCGATTCAGAAATCTGATGCTCAGATTCAAACTGATCAGTTGGTGTTGAAGAAGGATGAGCAAGAAGAGAATTTGAAGAAAACTAGTGGGAGGAGTGAGA</canonical>
            <polymorphic>CATGATTTTCATAATGCGTAAGTATTTTAAAGTGGCCTAGAAAACCTAAACCTCGGCCATTACAGTCTTCTCTCACTCCAAATGCCAGATCTCGACAAAAACTCCGGTTTCGATGGTTTCCTGAAACTCCAAGAAGACATCAAAGAATCTCTCAGGAATTTTATGCGATTCGGGCAAAAGTCCGATTTATTATCCCAGCTAAACGGTCAACAACTCAAATGTGTCAGCCAGATGTGTAAGTTTTAAGGGTTCAATTTGAAAACTTTTTGTTATTTTTAGTGAAATCTCGATCTACGACATCTTCTAGTGGAAAAACATCGAATGGCGAATATTCTGGCGAGCGAATCAGGGCGAAAAGTGTGAAAGCCGTTGAAGAAGACATTCCCCCAGTACCATTTGGAATACCACCGTTAGAAGTCAATGGTTTGTATCGGGACGATGGTTTGGATGAGGAGGAGCACTATAGCGATATGGATTGGTTAGTAAAAAAGAGGCAAAAYAGATTTGAGAGGGGGAGGAGTCGAACTTTGGTGTTGAGATTGGTAGACAAGTTTCTTACCAGTTGCGCTATACCGGCGCGCGCGGCTACGCCCAATGTTTTGATATAAGAAAAACCCGAACGACAGTGGTGGCTGGCTCCCACTGTCCTCATTGTGGCGCAATGGTAGCAGCTCTGTCTTTCAATCTGGAACTTGTTGGTTCGACTCCCACCACCTCTCAATCTGTTTTTGCTTTCTTTTTTAATCAATTAAGATTTAATTCAGGCTCAACAGTCAACGTTCAAGCAGATTCCCAGAGGAACCCATACCGAAATCTGCACCTGTCAAGTCCAAAACTCCAGAAGTTCCGAAATCTGTGAAATTTTCGGAACCAGTCAAAAAAATAGCTTCAAGAGCGAGACCGATTCAGAAATCTGATGCTCAGATTCAAACTGATCAGTTGGTGTTGAAGAAGGATGAGCAAGAAGAGAATTTGAAGAAAACTAGTGGGAGGAGTGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAGACATTCCCCCAGTA</pcr_primer_p1>
		<pcr_primer_p2>CGTTCGGGTTTTTCTTATATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAAGACATTCCCCCAGTACCATTTGGAATACCACCGTTAGAAGTCAATGGTTTGTATCGGGACGATGGTTTGGATGAGGAGGAGCACTATAGCGATATGGATTGGTTAGTAAAAAAGAGGCAAAATAGATTTGAGAGGGGGAGGAGTCGAACTTTGGTGTTGAGATTGGTAGACAAGTTTCTTACCAGTTGCGCTATACCGGCGCGCGCGGCTACGCCCAATGTTTTGATATAAGAAAAACCCGAACG</canonical_amplicon>
		<polymorphic_amplicon>AAGAAGACATTCCCCCAGTACCATTTGGAATACCACCGTTAGAAGTCAATGGTTTGTATCGGGACGATGGTTTGGATGAGGAGGAGCACTATAGCGATATGGATTGGTTAGTAAAAAAGAGGCAAAAYAGATTTGAGAGGGGGAGGAGTCGAACTTTGGTGTTGAGATTGGTAGACAAGTTTCTTACCAGTTGCGCTATACCGGCGCGCGCGGCTACGCCCAATGTTTTGATATAAGAAAAACCCGAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17110</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>691045</contig_pos>
        <strand>+</strand>
        <context>AGCAATTTAA[A/C]ATCGAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTAAAAAATTAATTTTAAGGCTGAAAAAAACTCGATTTCTAGCAATTTAA</left_flank>
        <right_flank>ATCGAAAAATACAAATTTTGGGGTCTAAAAACTCAAAAATCGACCTAAAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTCGTGGAAATCCCATTTTCAGAAGGTTGGCACATACATCTGAGTAGCTGAGCACTGTCTGAAAATTTGTGGTTTTTTCTGGCTGAAAATTCTAGAAAGGTCCGAAATGCCTCAAAATCGTACCATTTTATCACTCAATTCGCATTGAATCAAGAATGGAAGCGTTTGATCTACCGTACTCATTCCAGTCTTTTCAATCGTTCGACACGCCTTCATGTAGTATTCAATCTGAAAAAGTTGGATCTTTAGGATGAAAATTCTGATTTTTCGTTCAATTTTCAGTTTTGAAACACTGATTTTACCCCAAAAAAACCATTTGGAAGTCTAGAAATCTCAAACAATTGTTTTTTTTTGAAAGTTTGAAAATTTCGGTTTCCCGCTTTCAGTACGACACTCCGCGATAACGCCTAGTGCGCCCGGTTTAGCGTAAATCGACATTACCAAAAATTAAAAAATTAATTTTAAGGCTGAAAAAAACTCGATTTCTAGCAATTTAAAATCGAAAAATACAAATTTTGGGGTCTAAAAACTCAAAAATCGACCTAAAAAACACATTTCTCACATGAACTAATCGATTTTTCGGCAACAAATTCAGCGATTTTTCCACCAAATCCGTTCGATATCCCTTCGTCAGCAGCCTCTTTTTCAGCTCCTCCTGCTGCGTTTTTCCCAATTTCTCTGGAACATTTTCAGCCGATTTTTCAGTAGGCTTCATATGATTATTGTTGTTGTTCTGGAATGGTAACGGAGACGACGATGATGATGATGAAGGGGGCGGAGCTTGAGGGGGCGGAGTCGATGTGTTCCAGGGATTTGTGAGCATTAGGACCTGCAAAAAATGGGTGTCAATGGCTAGTTTTTTGGATTTTCAGAGTCAAAATTTCCATTTTTAAGTCTGAAATTCACTTTTTTTCAAGCCAAAAATGTATATTTTTCATCTGAAAATCGAGCGTTTTTTAGCACAAATTTGATATTTTTAGGTCCAAAAATGCCATTTT</canonical>
            <polymorphic>ATCTCGTGGAAATCCCATTTTCAGAAGGTTGGCACATACATCTGAGTAGCTGAGCACTGTCTGAAAATTTGTGGTTTTTTCTGGCTGAAAATTCTAGAAAGGTCCGAAATGCCTCAAAATCGTACCATTTTATCACTCAATTCGCATTGAATCAAGAATGGAAGCGTTTGATCTACCGTACTCATTCCAGTCTTTTCAATCGTTCGACACGCCTTCATGTAGTATTCAATCTGAAAAAGTTGGATCTTTAGGATGAAAATTCTGATTTTTCGTTCAATTTTCAGTTTTGAAACACTGATTTTACCCCAAAAAAACCATTTGGAAGTCTAGAAATCTCAAACAATTGTTTTTTTTTGAAAGTTTGAAAATTTCGGTTTCCCGCTTTCAGTACGACACTCCGCGATAACGCCTAGTGCGCCCGGTTTAGCGTAAATCGACATTACCAAAAATTAAAAAATTAATTTTAAGGCTGAAAAAAACTCGATTTCTAGCAATTTAAMATCGAAAAATACAAATTTTGGGGTCTAAAAACTCAAAAATCGACCTAAAAAACACATTTCTCACATGAACTAATCGATTTTTCGGCAACAAATTCAGCGATTTTTCCACCAAATCCGTTCGATATCCCTTCGTCAGCAGCCTCTTTTTCAGCTCCTCCTGCTGCGTTTTTCCCAATTTCTCTGGAACATTTTCAGCCGATTTTTCAGTAGGCTTCATATGATTATTGTTGTTGTTCTGGAATGGTAACGGAGACGACGATGATGATGATGAAGGGGGCGGAGCTTGAGGGGGCGGAGTCGATGTGTTCCAGGGATTTGTGAGCATTAGGACCTGCAAAAAATGGGTGTCAATGGCTAGTTTTTTGGATTTTCAGAGTCAAAATTTCCATTTTTAAGTCTGAAATTCACTTTTTTTCAAGCCAAAAATGTATATTTTTCATCTGAAAATCGAGCGTTTTTTAGCACAAATTTGATATTTTTAGGTCCAAAAATGCCATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAGTCTAGAAATCTCAAACAA</pcr_primer_p1>
		<pcr_primer_p2>GTTCATGTGAGAAATGTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAAGTCTAGAAATCTCAAACAATTGTTTTTTTTTGAAAGTTTGAAAATTTCGGTTTCCCGCTTTCAGTACGACACTCCGCGATAACGCCTAGTGCGCCCGGTTTAGCGTAAATCGACATTACCAAAAATTAAAAAATTAATTTTAAGGCTGAAAAAAACTCGATTTCTAGCAATTTAAAATCGAAAAATACAAATTTTGGGGTCTAAAAACTCAAAAATCGACCTAAAAAACACATTTCTCACATGAAC</canonical_amplicon>
		<polymorphic_amplicon>GGAAGTCTAGAAATCTCAAACAATTGTTTTTTTTTGAAAGTTTGAAAATTTCGGTTTCCCGCTTTCAGTACGACACTCCGCGATAACGCCTAGTGCGCCCGGTTTAGCGTAAATCGACATTACCAAAAATTAAAAAATTAATTTTAAGGCTGAAAAAAACTCGATTTCTAGCAATTTAAMATCGAAAAATACAAATTTTGGGGTCTAAAAACTCAAAAATCGACCTAAAAAACACATTTCTCACATGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17111</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>691078</contig_pos>
        <strand>+</strand>
        <context>GTCTAAAAAC[G/T]CAAAAATCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATTTCTAGCAATTTAAAATCGAAAAATACAAATTTTGGGGTCTAAAAAC</left_flank>
        <right_flank>CAAAAATCGACCTAAAAAACACATTTCTCACATGAACTAATCGATTTTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATACATCTGAGTAGCTGAGCACTGTCTGAAAATTTGTGGTTTTTTCTGGCTGAAAATTCTAGAAAGGTCCGAAATGCCTCAAAATCGTACCATTTTATCACTCAATTCGCATTGAATCAAGAATGGAAGCGTTTGATCTACCGTACTCATTCCAGTCTTTTCAATCGTTCGACACGCCTTCATGTAGTATTCAATCTGAAAAAGTTGGATCTTTAGGATGAAAATTCTGATTTTTCGTTCAATTTTCAGTTTTGAAACACTGATTTTACCCCAAAAAAACCATTTGGAAGTCTAGAAATCTCAAACAATTGTTTTTTTTTGAAAGTTTGAAAATTTCGGTTTCCCGCTTTCAGTACGACACTCCGCGATAACGCCTAGTGCGCCCGGTTTAGCGTAAATCGACATTACCAAAAATTAAAAAATTAATTTTAAGGCTGAAAAAAACTCGATTTCTAGCAATTTAAAATCGAAAAATACAAATTTTGGGGTCTAAAAACTCAAAAATCGACCTAAAAAACACATTTCTCACATGAACTAATCGATTTTTCGGCAACAAATTCAGCGATTTTTCCACCAAATCCGTTCGATATCCCTTCGTCAGCAGCCTCTTTTTCAGCTCCTCCTGCTGCGTTTTTCCCAATTTCTCTGGAACATTTTCAGCCGATTTTTCAGTAGGCTTCATATGATTATTGTTGTTGTTCTGGAATGGTAACGGAGACGACGATGATGATGATGAAGGGGGCGGAGCTTGAGGGGGCGGAGTCGATGTGTTCCAGGGATTTGTGAGCATTAGGACCTGCAAAAAATGGGTGTCAATGGCTAGTTTTTTGGATTTTCAGAGTCAAAATTTCCATTTTTAAGTCTGAAATTCACTTTTTTTCAAGCCAAAAATGTATATTTTTCATCTGAAAATCGAGCGTTTTTTAGCACAAATTTGATATTTTTAGGTCCAAAAATGCCATTTTTAGCAACTAAAATTGAGCTTTTTGAGCTTAAAA</canonical>
            <polymorphic>ACATACATCTGAGTAGCTGAGCACTGTCTGAAAATTTGTGGTTTTTTCTGGCTGAAAATTCTAGAAAGGTCCGAAATGCCTCAAAATCGTACCATTTTATCACTCAATTCGCATTGAATCAAGAATGGAAGCGTTTGATCTACCGTACTCATTCCAGTCTTTTCAATCGTTCGACACGCCTTCATGTAGTATTCAATCTGAAAAAGTTGGATCTTTAGGATGAAAATTCTGATTTTTCGTTCAATTTTCAGTTTTGAAACACTGATTTTACCCCAAAAAAACCATTTGGAAGTCTAGAAATCTCAAACAATTGTTTTTTTTTGAAAGTTTGAAAATTTCGGTTTCCCGCTTTCAGTACGACACTCCGCGATAACGCCTAGTGCGCCCGGTTTAGCGTAAATCGACATTACCAAAAATTAAAAAATTAATTTTAAGGCTGAAAAAAACTCGATTTCTAGCAATTTAAAATCGAAAAATACAAATTTTGGGGTCTAAAAACKCAAAAATCGACCTAAAAAACACATTTCTCACATGAACTAATCGATTTTTCGGCAACAAATTCAGCGATTTTTCCACCAAATCCGTTCGATATCCCTTCGTCAGCAGCCTCTTTTTCAGCTCCTCCTGCTGCGTTTTTCCCAATTTCTCTGGAACATTTTCAGCCGATTTTTCAGTAGGCTTCATATGATTATTGTTGTTGTTCTGGAATGGTAACGGAGACGACGATGATGATGATGAAGGGGGCGGAGCTTGAGGGGGCGGAGTCGATGTGTTCCAGGGATTTGTGAGCATTAGGACCTGCAAAAAATGGGTGTCAATGGCTAGTTTTTTGGATTTTCAGAGTCAAAATTTCCATTTTTAAGTCTGAAATTCACTTTTTTTCAAGCCAAAAATGTATATTTTTCATCTGAAAATCGAGCGTTTTTTAGCACAAATTTGATATTTTTAGGTCCAAAAATGCCATTTTTAGCAACTAAAATTGAGCTTTTTGAGCTTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTTGAAAATTTCGGTTTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATCGCTGAATTTGTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGTTTGAAAATTTCGGTTTCCCGCTTTCAGTACGACACTCCGCGATAACGCCTAGTGCGCCCGGTTTAGCGTAAATCGACATTACCAAAAATTAAAAAATTAATTTTAAGGCTGAAAAAAACTCGATTTCTAGCAATTTAAAATCGAAAAATACAAATTTTGGGGTCTAAAAACTCAAAAATCGACCTAAAAAACACATTTCTCACATGAACTAATCGATTTTTCGGCAACAAATTCAGCGATTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAGTTTGAAAATTTCGGTTTCCCGCTTTCAGTACGACACTCCGCGATAACGCCTAGTGCGCCCGGTTTAGCGTAAATCGACATTACCAAAAATTAAAAAATTAATTTTAAGGCTGAAAAAAACTCGATTTCTAGCAATTTAAAATCGAAAAATACAAATTTTGGGGTCTAAAAACKCAAAAATCGACCTAAAAAACACATTTCTCACATGAACTAATCGATTTTTCGGCAACAAATTCAGCGATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17112</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>691224</contig_pos>
        <strand>+</strand>
        <context>TTCCCAATTT[C/T]TCTGGAACAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCGTCAGCAGCCTCTTTTTCAGCTCCTCCTGCTGCGTTTTTCCCAATTT</left_flank>
        <right_flank>TCTGGAACATTTTCAGCCGATTTTTCAGTAGGCTTCATATGATTATTGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCATTCCAGTCTTTTCAATCGTTCGACACGCCTTCATGTAGTATTCAATCTGAAAAAGTTGGATCTTTAGGATGAAAATTCTGATTTTTCGTTCAATTTTCAGTTTTGAAACACTGATTTTACCCCAAAAAAACCATTTGGAAGTCTAGAAATCTCAAACAATTGTTTTTTTTTGAAAGTTTGAAAATTTCGGTTTCCCGCTTTCAGTACGACACTCCGCGATAACGCCTAGTGCGCCCGGTTTAGCGTAAATCGACATTACCAAAAATTAAAAAATTAATTTTAAGGCTGAAAAAAACTCGATTTCTAGCAATTTAAAATCGAAAAATACAAATTTTGGGGTCTAAAAACTCAAAAATCGACCTAAAAAACACATTTCTCACATGAACTAATCGATTTTTCGGCAACAAATTCAGCGATTTTTCCACCAAATCCGTTCGATATCCCTTCGTCAGCAGCCTCTTTTTCAGCTCCTCCTGCTGCGTTTTTCCCAATTTCTCTGGAACATTTTCAGCCGATTTTTCAGTAGGCTTCATATGATTATTGTTGTTGTTCTGGAATGGTAACGGAGACGACGATGATGATGATGAAGGGGGCGGAGCTTGAGGGGGCGGAGTCGATGTGTTCCAGGGATTTGTGAGCATTAGGACCTGCAAAAAATGGGTGTCAATGGCTAGTTTTTTGGATTTTCAGAGTCAAAATTTCCATTTTTAAGTCTGAAATTCACTTTTTTTCAAGCCAAAAATGTATATTTTTCATCTGAAAATCGAGCGTTTTTTAGCACAAATTTGATATTTTTAGGTCCAAAAATGCCATTTTTAGCAACTAAAATTGAGCTTTTTGAGCTTAAAACAGTTCGTTCAAGGTCAAAATTCATATTTTTCGGCTCAAAATTGAGATTTTCGTGTTCGAAATCCACAATTTCGGAACCGAAATTCGTATTTTTTGGTTTGAAAAATGCTGATTTTCAAGTCGAAAAAGGTCATTTTCAGTTCTGA</canonical>
            <polymorphic>ACTCATTCCAGTCTTTTCAATCGTTCGACACGCCTTCATGTAGTATTCAATCTGAAAAAGTTGGATCTTTAGGATGAAAATTCTGATTTTTCGTTCAATTTTCAGTTTTGAAACACTGATTTTACCCCAAAAAAACCATTTGGAAGTCTAGAAATCTCAAACAATTGTTTTTTTTTGAAAGTTTGAAAATTTCGGTTTCCCGCTTTCAGTACGACACTCCGCGATAACGCCTAGTGCGCCCGGTTTAGCGTAAATCGACATTACCAAAAATTAAAAAATTAATTTTAAGGCTGAAAAAAACTCGATTTCTAGCAATTTAAAATCGAAAAATACAAATTTTGGGGTCTAAAAACTCAAAAATCGACCTAAAAAACACATTTCTCACATGAACTAATCGATTTTTCGGCAACAAATTCAGCGATTTTTCCACCAAATCCGTTCGATATCCCTTCGTCAGCAGCCTCTTTTTCAGCTCCTCCTGCTGCGTTTTTCCCAATTTYTCTGGAACATTTTCAGCCGATTTTTCAGTAGGCTTCATATGATTATTGTTGTTGTTCTGGAATGGTAACGGAGACGACGATGATGATGATGAAGGGGGCGGAGCTTGAGGGGGCGGAGTCGATGTGTTCCAGGGATTTGTGAGCATTAGGACCTGCAAAAAATGGGTGTCAATGGCTAGTTTTTTGGATTTTCAGAGTCAAAATTTCCATTTTTAAGTCTGAAATTCACTTTTTTTCAAGCCAAAAATGTATATTTTTCATCTGAAAATCGAGCGTTTTTTAGCACAAATTTGATATTTTTAGGTCCAAAAATGCCATTTTTAGCAACTAAAATTGAGCTTTTTGAGCTTAAAACAGTTCGTTCAAGGTCAAAATTCATATTTTTCGGCTCAAAATTGAGATTTTCGTGTTCGAAATCCACAATTTCGGAACCGAAATTCGTATTTTTTGGTTTGAAAAATGCTGATTTTCAAGTCGAAAAAGGTCATTTTCAGTTCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATACAAATTTTGGGGTCTA</pcr_primer_p1>
		<pcr_primer_p2>CATTCCAGAACAACAACAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AAAAATACAAATTTTGGGGTCTAAAAACTCAAAAATCGACCTAAAAAACACATTTCTCACATGAACTAATCGATTTTTCGGCAACAAATTCAGCGATTTTTCCACCAAATCCGTTCGATATCCCTTCGTCAGCAGCCTCTTTTTCAGCTCCTCCTGCTGCGTTTTTCCCAATTTCTCTGGAACATTTTCAGCCGATTTTTCAGTAGGCTTCATATGATTATTGTTGTTGTTCTGGAATG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATACAAATTTTGGGGTCTAAAAACTCAAAAATCGACCTAAAAAACACATTTCTCACATGAACTAATCGATTTTTCGGCAACAAATTCAGCGATTTTTCCACCAAATCCGTTCGATATCCCTTCGTCAGCAGCCTCTTTTTCAGCTCCTCCTGCTGCGTTTTTCCCAATTTYTCTGGAACATTTTCAGCCGATTTTTCAGTAGGCTTCATATGATTATTGTTGTTGTTCTGGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17113</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>691494</contig_pos>
        <strand>+</strand>
        <context>ATCTGAAAAT[C/T]GAGCGTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAATTCACTTTTTTTCAAGCCAAAAATGTATATTTTTCATCTGAAAAT</left_flank>
        <right_flank>GAGCGTTTTTTAGCACAAATTTGATATTTTTAGGTCCAAAAATGCCATTT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAAAAAATTAATTTTAAGGCTGAAAAAAACTCGATTTCTAGCAATTTAAAATCGAAAAATACAAATTTTGGGGTCTAAAAACTCAAAAATCGACCTAAAAAACACATTTCTCACATGAACTAATCGATTTTTCGGCAACAAATTCAGCGATTTTTCCACCAAATCCGTTCGATATCCCTTCGTCAGCAGCCTCTTTTTCAGCTCCTCCTGCTGCGTTTTTCCCAATTTCTCTGGAACATTTTCAGCCGATTTTTCAGTAGGCTTCATATGATTATTGTTGTTGTTCTGGAATGGTAACGGAGACGACGATGATGATGATGAAGGGGGCGGAGCTTGAGGGGGCGGAGTCGATGTGTTCCAGGGATTTGTGAGCATTAGGACCTGCAAAAAATGGGTGTCAATGGCTAGTTTTTTGGATTTTCAGAGTCAAAATTTCCATTTTTAAGTCTGAAATTCACTTTTTTTCAAGCCAAAAATGTATATTTTTCATCTGAAAATCGAGCGTTTTTTAGCACAAATTTGATATTTTTAGGTCCAAAAATGCCATTTTTAGCAACTAAAATTGAGCTTTTTGAGCTTAAAACAGTTCGTTCAAGGTCAAAATTCATATTTTTCGGCTCAAAATTGAGATTTTCGTGTTCGAAATCCACAATTTCGGAACCGAAATTCGTATTTTTTGGTTTGAAAAATGCTGATTTTCAAGTCGAAAAAGGTCATTTTCAGTTCTGAATTTCACATTTTTCCATCCAAAAATTCATATTTTTCAGTTCAAAATTGAGATTTTCGAGTCCTAAATCCGCCAATTTTGAGCTCAAAATTCAATTATTCTGATTTGAAAAATGCACATTTTCAGGTCCAAAAAGGCTCCAAATTTGAGATTTTTAGGTCCAAAATTTGCATTTTTTGAGTAGAAAATTTGCTTTTTTTAGCGTCATATTTCCAGTATTTCGAAGCTTATTTTTGACAGCTTCTGGTCCAATTTTTGTCTTTTTTGAGCCA</canonical>
            <polymorphic>TTAAAAAATTAATTTTAAGGCTGAAAAAAACTCGATTTCTAGCAATTTAAAATCGAAAAATACAAATTTTGGGGTCTAAAAACTCAAAAATCGACCTAAAAAACACATTTCTCACATGAACTAATCGATTTTTCGGCAACAAATTCAGCGATTTTTCCACCAAATCCGTTCGATATCCCTTCGTCAGCAGCCTCTTTTTCAGCTCCTCCTGCTGCGTTTTTCCCAATTTCTCTGGAACATTTTCAGCCGATTTTTCAGTAGGCTTCATATGATTATTGTTGTTGTTCTGGAATGGTAACGGAGACGACGATGATGATGATGAAGGGGGCGGAGCTTGAGGGGGCGGAGTCGATGTGTTCCAGGGATTTGTGAGCATTAGGACCTGCAAAAAATGGGTGTCAATGGCTAGTTTTTTGGATTTTCAGAGTCAAAATTTCCATTTTTAAGTCTGAAATTCACTTTTTTTCAAGCCAAAAATGTATATTTTTCATCTGAAAATYGAGCGTTTTTTAGCACAAATTTGATATTTTTAGGTCCAAAAATGCCATTTTTAGCAACTAAAATTGAGCTTTTTGAGCTTAAAACAGTTCGTTCAAGGTCAAAATTCATATTTTTCGGCTCAAAATTGAGATTTTCGTGTTCGAAATCCACAATTTCGGAACCGAAATTCGTATTTTTTGGTTTGAAAAATGCTGATTTTCAAGTCGAAAAAGGTCATTTTCAGTTCTGAATTTCACATTTTTCCATCCAAAAATTCATATTTTTCAGTTCAAAATTGAGATTTTCGAGTCCTAAATCCGCCAATTTTGAGCTCAAAATTCAATTATTCTGATTTGAAAAATGCACATTTTCAGGTCCAAAAAGGCTCCAAATTTGAGATTTTTAGGTCCAAAATTTGCATTTTTTGAGTAGAAAATTTGCTTTTTTTAGCGTCATATTTCCAGTATTTCGAAGCTTATTTTTGACAGCTTCTGGTCCAATTTTTGTCTTTTTTGAGCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>179 164 150 142 80 64 50 45 38 34 33 21</canonical_bands>
                <polymorphic_bands>292 179 164 80 64 50 45 38 34 33 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGTGAGCATTAGGACCTG</pcr_primer_p1>
		<pcr_primer_p2>AAAAATATGAATTTTGACCTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGTGAGCATTAGGACCTGCAAAAAATGGGTGTCAATGGCTAGTTTTTTGGATTTTCAGAGTCAAAATTTCCATTTTTAAGTCTGAAATTCACTTTTTTTCAAGCCAAAAATGTATATTTTTCATCTGAAAATCGAGCGTTTTTTAGCACAAATTTGATATTTTTAGGTCCAAAAATGCCATTTTTAGCAACTAAAATTGAGCTTTTTGAGCTTAAAACAGTTCGTTCAAGGTCAAAATTCATATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTGTGAGCATTAGGACCTGCAAAAAATGGGTGTCAATGGCTAGTTTTTTGGATTTTCAGAGTCAAAATTTCCATTTTTAAGTCTGAAATTCACTTTTTTTCAAGCCAAAAATGTATATTTTTCATCTGAAAATYGAGCGTTTTTTAGCACAAATTTGATATTTTTAGGTCCAAAAATGCCATTTTTAGCAACTAAAATTGAGCTTTTTGAGCTTAAAACAGTTCGTTCAAGGTCAAAATTCATATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17114</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>691551</contig_pos>
        <strand>+</strand>
        <context>ATTTTTAGCA[A/T]CTAAAATTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTAGCACAAATTTGATATTTTTAGGTCCAAAAATGCCATTTTTAGCA</left_flank>
        <right_flank>CTAAAATTGAGCTTTTTGAGCTTAAAACAGTTCGTTCAAGGTCAAAATTC</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATACAAATTTTGGGGTCTAAAAACTCAAAAATCGACCTAAAAAACACATTTCTCACATGAACTAATCGATTTTTCGGCAACAAATTCAGCGATTTTTCCACCAAATCCGTTCGATATCCCTTCGTCAGCAGCCTCTTTTTCAGCTCCTCCTGCTGCGTTTTTCCCAATTTCTCTGGAACATTTTCAGCCGATTTTTCAGTAGGCTTCATATGATTATTGTTGTTGTTCTGGAATGGTAACGGAGACGACGATGATGATGATGAAGGGGGCGGAGCTTGAGGGGGCGGAGTCGATGTGTTCCAGGGATTTGTGAGCATTAGGACCTGCAAAAAATGGGTGTCAATGGCTAGTTTTTTGGATTTTCAGAGTCAAAATTTCCATTTTTAAGTCTGAAATTCACTTTTTTTCAAGCCAAAAATGTATATTTTTCATCTGAAAATCGAGCGTTTTTTAGCACAAATTTGATATTTTTAGGTCCAAAAATGCCATTTTTAGCAACTAAAATTGAGCTTTTTGAGCTTAAAACAGTTCGTTCAAGGTCAAAATTCATATTTTTCGGCTCAAAATTGAGATTTTCGTGTTCGAAATCCACAATTTCGGAACCGAAATTCGTATTTTTTGGTTTGAAAAATGCTGATTTTCAAGTCGAAAAAGGTCATTTTCAGTTCTGAATTTCACATTTTTCCATCCAAAAATTCATATTTTTCAGTTCAAAATTGAGATTTTCGAGTCCTAAATCCGCCAATTTTGAGCTCAAAATTCAATTATTCTGATTTGAAAAATGCACATTTTCAGGTCCAAAAAGGCTCCAAATTTGAGATTTTTAGGTCCAAAATTTGCATTTTTTGAGTAGAAAATTTGCTTTTTTTAGCGTCATATTTCCAGTATTTCGAAGCTTATTTTTGACAGCTTCTGGTCCAATTTTTGTCTTTTTTGAGCCAAGAAAACGCATTTTTGAGTATTTTAAGCCATTTTTCTCACCTCCTGCAACGCTTTCT</canonical>
            <polymorphic>AAATACAAATTTTGGGGTCTAAAAACTCAAAAATCGACCTAAAAAACACATTTCTCACATGAACTAATCGATTTTTCGGCAACAAATTCAGCGATTTTTCCACCAAATCCGTTCGATATCCCTTCGTCAGCAGCCTCTTTTTCAGCTCCTCCTGCTGCGTTTTTCCCAATTTCTCTGGAACATTTTCAGCCGATTTTTCAGTAGGCTTCATATGATTATTGTTGTTGTTCTGGAATGGTAACGGAGACGACGATGATGATGATGAAGGGGGCGGAGCTTGAGGGGGCGGAGTCGATGTGTTCCAGGGATTTGTGAGCATTAGGACCTGCAAAAAATGGGTGTCAATGGCTAGTTTTTTGGATTTTCAGAGTCAAAATTTCCATTTTTAAGTCTGAAATTCACTTTTTTTCAAGCCAAAAATGTATATTTTTCATCTGAAAATCGAGCGTTTTTTAGCACAAATTTGATATTTTTAGGTCCAAAAATGCCATTTTTAGCAWCTAAAATTGAGCTTTTTGAGCTTAAAACAGTTCGTTCAAGGTCAAAATTCATATTTTTCGGCTCAAAATTGAGATTTTCGTGTTCGAAATCCACAATTTCGGAACCGAAATTCGTATTTTTTGGTTTGAAAAATGCTGATTTTCAAGTCGAAAAAGGTCATTTTCAGTTCTGAATTTCACATTTTTCCATCCAAAAATTCATATTTTTCAGTTCAAAATTGAGATTTTCGAGTCCTAAATCCGCCAATTTTGAGCTCAAAATTCAATTATTCTGATTTGAAAAATGCACATTTTCAGGTCCAAAAAGGCTCCAAATTTGAGATTTTTAGGTCCAAAATTTGCATTTTTTGAGTAGAAAATTTGCTTTTTTTAGCGTCATATTTCCAGTATTTCGAAGCTTATTTTTGACAGCTTCTGGTCCAATTTTTGTCTTTTTTGAGCCAAGAAAACGCATTTTTGAGTATTTTAAGCCATTTTTCTCACCTCCTGCAACGCTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTGAGCATTAGGACCTG</pcr_primer_p1>
		<pcr_primer_p2>AAAAATATGAATTTTGACCTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGTGAGCATTAGGACCTGCAAAAAATGGGTGTCAATGGCTAGTTTTTTGGATTTTCAGAGTCAAAATTTCCATTTTTAAGTCTGAAATTCACTTTTTTTCAAGCCAAAAATGTATATTTTTCATCTGAAAATCGAGCGTTTTTTAGCACAAATTTGATATTTTTAGGTCCAAAAATGCCATTTTTAGCAACTAAAATTGAGCTTTTTGAGCTTAAAACAGTTCGTTCAAGGTCAAAATTCATATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTGTGAGCATTAGGACCTGCAAAAAATGGGTGTCAATGGCTAGTTTTTTGGATTTTCAGAGTCAAAATTTCCATTTTTAAGTCTGAAATTCACTTTTTTTCAAGCCAAAAATGTATATTTTTCATCTGAAAATCGAGCGTTTTTTAGCACAAATTTGATATTTTTAGGTCCAAAAATGCCATTTTTAGCAWCTAAAATTGAGCTTTTTGAGCTTAAAACAGTTCGTTCAAGGTCAAAATTCATATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17116</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>692889</contig_pos>
        <strand>+</strand>
        <context>ATTTTAGATM[C/T]AAAAATTGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTTAGAGAATCGGTGGATTTTTGGTCTAAAATGCACTATTTTAGATC</left_flank>
        <right_flank>AAAAATTGTGAATTTAGAAGCCGAAATTCCGATTTTCAGGCCAAAGTTGG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAGATTTTTAGCGTCTAATTTCGTATTTTTAGGTCCAAAATAGTATTTTTAGAGCTCAAATCAATTGGATTTTCGGTCGAAAATGCACTATTTTTGATCTAAAAATTGTGAATTCTCAGAAGCCGAAATTCAGATTTTCAATCCAAAATTGGAAATTTTTCCTTCTGGAAAAAGTAATAAATTTGAGTAGAAATTTGTATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAAAAGTGAGCCGAAATCGATATTTTTATGTGAAAAATCCATATTCTGGGCTGAAAATCTAGAATTTTTTAGTTAAAAAATTACAAAATTTAGGAGCAAAACTCCATTTTTTAAGCTCGATTTTGAGATTTTTAGGTCCAAAATCAAGTATTTTAAAGTATAAAATGTGTATTTTTAGAGAATCGGTGGATTTTTGGTCTAAAATGCACTATTTTAGATCTAAAAATTGTGAATTTAGAAGCCGAAATTCCGATTTTCAGGCCAAAGTTGGACATTTTTCCTTCTGGAAAAATTAGTGAATTTGGGTAGAAATTTGTATTTTCAGAGTTGAGAATGAGCTAAAAATCGTGTTTTTTAGGTCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAGTGAGCTACAAATCGTATTTTTCAGGTATGGATCCGGCTAGAAATTGAGCATTTTTGGGCTCAAAATTTACCAAATTTAAGAGCAAAACTTTATTTTTTAAAGCTCGATTTTTGATTTTTTTTTTTGAGATTTTCAGGTCCAAAATAAAGTATTTTAAAACTCAAAAAATGCATTTTTAAAGCTCAAATCTGTGTATTTTCGGTCTAAAATGCACAATTTTAGATCCAAAAATTGTGAATTTCAAGCCAAATTTGGACCTTTTTAGGTTTAAAAATTGGAAAAAAAGCCTTTTTTTCTAAAAAATCACCTGTGACAACACAT</canonical>
            <polymorphic>TTTGAGATTTTTAGCGTCTAATTTCGTATTTTTAGGTCCAAAATAGTATTTTTAGAGCTCAAATCAATTGGATTTTCGGTCGAAAATGCACTATTTTTGATCTAAAAATTGTGAATTCTCAGAAGCCGAAATTCAGATTTTCAATCCAAAATTGGAAATTTTTCCTTCTGGAAAAAGTAATAAATTTGAGTAGAAATTTGTATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAAAAGTGAGCCGAAATCGATATTTTTATGTGAAAAATCCATATTCTGGGCTGAAAATCTAGAATTTTTTAGTTAAAAAATTACAAAATTTAGGAGCAAAACTCCATTTTTTAAGCTCGATTTTGAGATTTTTAGGTCCAAAATCAAGTATTTTAAAGTATAAAATGTGTATTTTTAGAGAATCGGTGGATTTTTGGTCTAAAATGCACTATTTTAGATCYAAAAATTGTGAATTTAGAAGCCGAAATTCCGATTTTCAGGCCAAAGTTGGACATTTTTCCTTCTGGAAAAATTAGTGAATTTGGGTAGAAATTTGTATTTTCAGAGTTGAGAATGAGCTAAAAATCGTGTTTTTTAGGTCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAGTGAGCTACAAATCGTATTTTTCAGGTATGGATCCGGCTAGAAATTGAGCATTTTTGGGCTCAAAATTTACCAAATTTAAGAGCAAAACTTTATTTTTTAAAGCTCGATTTTTGATTTTTTTTTTTGAGATTTTCAGGTCCAAAATAAAGTATTTTAAAACTCAAAAAATGCATTTTTAAAGCTCAAATCTGTGTATTTTCGGTCTAAAATGCACAATTTTAGATCCAAAAATTGTGAATTTCAAGCCAAATTTGGACCTTTTTAGGTTTAAAAATTGGAAAAAAAGCCTTTTTTTCTAAAAAATCACCTGTGACAACACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>495 213 192 100</canonical_bands>
                <polymorphic_bands>708 192 100</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATTTTTAGAGAATCGGTGGA</pcr_primer_p1>
		<pcr_primer_p2>AATACGATTTGTAGCTCACTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTATTTTTAGAGAATCGGTGGATTTTTGGTCTAAAATGCACTATTTTAGATCTAAAAATTGTGAATTTAGAAGCCGAAATTCCGATTTTCAGGCCAAAGTTGGACATTTTTCCTTCTGGAAAAATTAGTGAATTTGGGTAGAAATTTGTATTTTCAGAGTTGAGAATGAGCTAAAAATCGTGTTTTTTAGGTCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAGTGAGCTACAAATCGTATT</canonical_amplicon>
		<polymorphic_amplicon>GTATTTTTAGAGAATCGGTGGATTTTTGGTCTAAAATGCACTATTTTAGATCYAAAAATTGTGAATTTAGAAGCCGAAATTCCGATTTTCAGGCCAAAGTTGGACATTTTTCCTTCTGGAAAAATTAGTGAATTTGGGTAGAAATTTGTATTTTCAGAGTTGAGAATGAGCTAAAAATCGTGTTTTTTAGGTCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAGTGAGCTACAAATCGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17117</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>692888</contig_pos>
        <strand>+</strand>
        <context>TATTTTAGAT[A/C]YAAAAATTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATTTTTAGAGAATCGGTGGATTTTTGGTCTAAAATGCACTATTTTAGAT</left_flank>
        <right_flank>TAAAAATTGTGAATTTAGAAGCCGAAATTCCGATTTTCAGGCCAAAGTTG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGAGATTTTTAGCGTCTAATTTCGTATTTTTAGGTCCAAAATAGTATTTTTAGAGCTCAAATCAATTGGATTTTCGGTCGAAAATGCACTATTTTTGATCTAAAAATTGTGAATTCTCAGAAGCCGAAATTCAGATTTTCAATCCAAAATTGGAAATTTTTCCTTCTGGAAAAAGTAATAAATTTGAGTAGAAATTTGTATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAAAAGTGAGCCGAAATCGATATTTTTATGTGAAAAATCCATATTCTGGGCTGAAAATCTAGAATTTTTTAGTTAAAAAATTACAAAATTTAGGAGCAAAACTCCATTTTTTAAGCTCGATTTTGAGATTTTTAGGTCCAAAATCAAGTATTTTAAAGTATAAAATGTGTATTTTTAGAGAATCGGTGGATTTTTGGTCTAAAATGCACTATTTTAGATCTAAAAATTGTGAATTTAGAAGCCGAAATTCCGATTTTCAGGCCAAAGTTGGACATTTTTCCTTCTGGAAAAATTAGTGAATTTGGGTAGAAATTTGTATTTTCAGAGTTGAGAATGAGCTAAAAATCGTGTTTTTTAGGTCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAGTGAGCTACAAATCGTATTTTTCAGGTATGGATCCGGCTAGAAATTGAGCATTTTTGGGCTCAAAATTTACCAAATTTAAGAGCAAAACTTTATTTTTTAAAGCTCGATTTTTGATTTTTTTTTTTGAGATTTTCAGGTCCAAAATAAAGTATTTTAAAACTCAAAAAATGCATTTTTAAAGCTCAAATCTGTGTATTTTCGGTCTAAAATGCACAATTTTAGATCCAAAAATTGTGAATTTCAAGCCAAATTTGGACCTTTTTAGGTTTAAAAATTGGAAAAAAAGCCTTTTTTTCTAAAAAATCACCTGTGACAACACA</canonical>
            <polymorphic>TTTTGAGATTTTTAGCGTCTAATTTCGTATTTTTAGGTCCAAAATAGTATTTTTAGAGCTCAAATCAATTGGATTTTCGGTCGAAAATGCACTATTTTTGATCTAAAAATTGTGAATTCTCAGAAGCCGAAATTCAGATTTTCAATCCAAAATTGGAAATTTTTCCTTCTGGAAAAAGTAATAAATTTGAGTAGAAATTTGTATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAAAAGTGAGCCGAAATCGATATTTTTATGTGAAAAATCCATATTCTGGGCTGAAAATCTAGAATTTTTTAGTTAAAAAATTACAAAATTTAGGAGCAAAACTCCATTTTTTAAGCTCGATTTTGAGATTTTTAGGTCCAAAATCAAGTATTTTAAAGTATAAAATGTGTATTTTTAGAGAATCGGTGGATTTTTGGTCTAAAATGCACTATTTTAGATMTAAAAATTGTGAATTTAGAAGCCGAAATTCCGATTTTCAGGCCAAAGTTGGACATTTTTCCTTCTGGAAAAATTAGTGAATTTGGGTAGAAATTTGTATTTTCAGAGTTGAGAATGAGCTAAAAATCGTGTTTTTTAGGTCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAGTGAGCTACAAATCGTATTTTTCAGGTATGGATCCGGCTAGAAATTGAGCATTTTTGGGCTCAAAATTTACCAAATTTAAGAGCAAAACTTTATTTTTTAAAGCTCGATTTTTGATTTTTTTTTTTGAGATTTTCAGGTCCAAAATAAAGTATTTTAAAACTCAAAAAATGCATTTTTAAAGCTCAAATCTGTGTATTTTCGGTCTAAAATGCACAATTTTAGATCCAAAAATTGTGAATTTCAAGCCAAATTTGGACCTTTTTAGGTTTAAAAATTGGAAAAAAAGCCTTTTTTTCTAAAAAATCACCTGTGACAACACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>397 213 192 99 99</canonical_bands>
                <polymorphic_bands>610 192 99 99</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>496 213 192 99</canonical_bands>
                <polymorphic_bands>709 192 99</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATTTTTAGAGAATCGGTGGA</pcr_primer_p1>
		<pcr_primer_p2>AATACGATTTGTAGCTCACTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTATTTTTAGAGAATCGGTGGATTTTTGGTCTAAAATGCACTATTTTAGATCTAAAAATTGTGAATTTAGAAGCCGAAATTCCGATTTTCAGGCCAAAGTTGGACATTTTTCCTTCTGGAAAAATTAGTGAATTTGGGTAGAAATTTGTATTTTCAGAGTTGAGAATGAGCTAAAAATCGTGTTTTTTAGGTCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAGTGAGCTACAAATCGTATT</canonical_amplicon>
		<polymorphic_amplicon>GTATTTTTAGAGAATCGGTGGATTTTTGGTCTAAAATGCACTATTTTAGATMTAAAAATTGTGAATTTAGAAGCCGAAATTCCGATTTTCAGGCCAAAGTTGGACATTTTTCCTTCTGGAAAAATTAGTGAATTTGGGTAGAAATTTGTATTTTCAGAGTTGAGAATGAGCTAAAAATCGTGTTTTTTAGGTCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAGTGAGCTACAAATCGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17118</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>692828</contig_pos>
        <strand>+</strand>
        <context>ATTTTAAAGT[A/T]TAAAATGTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTAAGCTCGATTTTGAGATTTTTAGGTCCAAAATCAAGTATTTTAAAGT</left_flank>
        <right_flank>TAAAATGTGTATTTTTAGAGAATCGGTGGATTTTTGGTCTAAAATGCACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACCAAATTTAGGAGCAAAATTGGCTTTTTTTGCTCCGAAACTCACTTTTTTAGCTGGATTTTGAGATTTTTAGCGTCTAATTTCGTATTTTTAGGTCCAAAATAGTATTTTTAGAGCTCAAATCAATTGGATTTTCGGTCGAAAATGCACTATTTTTGATCTAAAAATTGTGAATTCTCAGAAGCCGAAATTCAGATTTTCAATCCAAAATTGGAAATTTTTCCTTCTGGAAAAAGTAATAAATTTGAGTAGAAATTTGTATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAAAAGTGAGCCGAAATCGATATTTTTATGTGAAAAATCCATATTCTGGGCTGAAAATCTAGAATTTTTTAGTTAAAAAATTACAAAATTTAGGAGCAAAACTCCATTTTTTAAGCTCGATTTTGAGATTTTTAGGTCCAAAATCAAGTATTTTAAAGTATAAAATGTGTATTTTTAGAGAATCGGTGGATTTTTGGTCTAAAATGCACTATTTTAGATCTAAAAATTGTGAATTTAGAAGCCGAAATTCCGATTTTCAGGCCAAAGTTGGACATTTTTCCTTCTGGAAAAATTAGTGAATTTGGGTAGAAATTTGTATTTTCAGAGTTGAGAATGAGCTAAAAATCGTGTTTTTTAGGTCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAGTGAGCTACAAATCGTATTTTTCAGGTATGGATCCGGCTAGAAATTGAGCATTTTTGGGCTCAAAATTTACCAAATTTAAGAGCAAAACTTTATTTTTTAAAGCTCGATTTTTGATTTTTTTTTTTGAGATTTTCAGGTCCAAAATAAAGTATTTTAAAACTCAAAAAATGCATTTTTAAAGCTCAAATCTGTGTATTTTCGGTCTAAAATGCACAATTTTAGATCCAAAAATTGTGAATTTCAAGCCAAATTTGGACCTT</canonical>
            <polymorphic>CTACCAAATTTAGGAGCAAAATTGGCTTTTTTTGCTCCGAAACTCACTTTTTTAGCTGGATTTTGAGATTTTTAGCGTCTAATTTCGTATTTTTAGGTCCAAAATAGTATTTTTAGAGCTCAAATCAATTGGATTTTCGGTCGAAAATGCACTATTTTTGATCTAAAAATTGTGAATTCTCAGAAGCCGAAATTCAGATTTTCAATCCAAAATTGGAAATTTTTCCTTCTGGAAAAAGTAATAAATTTGAGTAGAAATTTGTATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAAAAGTGAGCCGAAATCGATATTTTTATGTGAAAAATCCATATTCTGGGCTGAAAATCTAGAATTTTTTAGTTAAAAAATTACAAAATTTAGGAGCAAAACTCCATTTTTTAAGCTCGATTTTGAGATTTTTAGGTCCAAAATCAAGTATTTTAAAGTWTAAAATGTGTATTTTTAGAGAATCGGTGGATTTTTGGTCTAAAATGCACTATTTTAGATCTAAAAATTGTGAATTTAGAAGCCGAAATTCCGATTTTCAGGCCAAAGTTGGACATTTTTCCTTCTGGAAAAATTAGTGAATTTGGGTAGAAATTTGTATTTTCAGAGTTGAGAATGAGCTAAAAATCGTGTTTTTTAGGTCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAGTGAGCTACAAATCGTATTTTTCAGGTATGGATCCGGCTAGAAATTGAGCATTTTTGGGCTCAAAATTTACCAAATTTAAGAGCAAAACTTTATTTTTTAAAGCTCGATTTTTGATTTTTTTTTTTGAGATTTTCAGGTCCAAAATAAAGTATTTTAAAACTCAAAAAATGCATTTTTAAAGCTCAAATCTGTGTATTTTCGGTCTAAAATGCACAATTTTAGATCCAAAAATTGTGAATTTCAAGCCAAATTTGGACCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTACAAAATTTAGGAGCAAAA</pcr_primer_p1>
		<pcr_primer_p2>TACAAATTTCTACCCAAATTCAC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AATTACAAAATTTAGGAGCAAAACTCCATTTTTTAAGCTCGATTTTGAGATTTTTAGGTCCAAAATCAAGTATTTTAAAGTATAAAATGTGTATTTTTAGAGAATCGGTGGATTTTTGGTCTAAAATGCACTATTTTAGATCTAAAAATTGTGAATTTAGAAGCCGAAATTCCGATTTTCAGGCCAAAGTTGGACATTTTTCCTTCTGGAAAAATTAGTGAATTTGGGTAGAAATTTGTA</canonical_amplicon>
		<polymorphic_amplicon>AATTACAAAATTTAGGAGCAAAACTCCATTTTTTAAGCTCGATTTTGAGATTTTTAGGTCCAAAATCAAGTATTTTAAAGTWTAAAATGTGTATTTTTAGAGAATCGGTGGATTTTTGGTCTAAAATGCACTATTTTAGATCTAAAAATTGTGAATTTAGAAGCCGAAATTCCGATTTTCAGGCCAAAGTTGGACATTTTTCCTTCTGGAAAAATTAGTGAATTTGGGTAGAAATTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17119</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>692717</contig_pos>
        <strand>+</strand>
        <context>CCATATTCTG[A/G]GCTGAAAATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAAAGTGAGCCGAAATCGATATTTTTATGTGAAAAATCCATATTCTG</left_flank>
        <right_flank>GCTGAAAATCTAGAATTTTTTAGTTAAAAAATTACAAAATTTAGGAGCAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTATAGAATTTTGGTTGAAAATTGGCATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATGTCCGAATCAGGCTAGAAATTGAGCATTTTTGGGCTACAAATCTACCAAATTTAGGAGCAAAATTGGCTTTTTTTGCTCCGAAACTCACTTTTTTAGCTGGATTTTGAGATTTTTAGCGTCTAATTTCGTATTTTTAGGTCCAAAATAGTATTTTTAGAGCTCAAATCAATTGGATTTTCGGTCGAAAATGCACTATTTTTGATCTAAAAATTGTGAATTCTCAGAAGCCGAAATTCAGATTTTCAATCCAAAATTGGAAATTTTTCCTTCTGGAAAAAGTAATAAATTTGAGTAGAAATTTGTATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAAAAGTGAGCCGAAATCGATATTTTTATGTGAAAAATCCATATTCTGGGCTGAAAATCTAGAATTTTTTAGTTAAAAAATTACAAAATTTAGGAGCAAAACTCCATTTTTTAAGCTCGATTTTGAGATTTTTAGGTCCAAAATCAAGTATTTTAAAGTATAAAATGTGTATTTTTAGAGAATCGGTGGATTTTTGGTCTAAAATGCACTATTTTAGATCTAAAAATTGTGAATTTAGAAGCCGAAATTCCGATTTTCAGGCCAAAGTTGGACATTTTTCCTTCTGGAAAAATTAGTGAATTTGGGTAGAAATTTGTATTTTCAGAGTTGAGAATGAGCTAAAAATCGTGTTTTTTAGGTCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAGTGAGCTACAAATCGTATTTTTCAGGTATGGATCCGGCTAGAAATTGAGCATTTTTGGGCTCAAAATTTACCAAATTTAAGAGCAAAACTTTATTTTTTAAAGCTCGATTTTTGATTTTTTTTTTTGAGATTTTCAGGTCCAAAATAAAG</canonical>
            <polymorphic>AAGTATAGAATTTTGGTTGAAAATTGGCATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATGTCCGAATCAGGCTAGAAATTGAGCATTTTTGGGCTACAAATCTACCAAATTTAGGAGCAAAATTGGCTTTTTTTGCTCCGAAACTCACTTTTTTAGCTGGATTTTGAGATTTTTAGCGTCTAATTTCGTATTTTTAGGTCCAAAATAGTATTTTTAGAGCTCAAATCAATTGGATTTTCGGTCGAAAATGCACTATTTTTGATCTAAAAATTGTGAATTCTCAGAAGCCGAAATTCAGATTTTCAATCCAAAATTGGAAATTTTTCCTTCTGGAAAAAGTAATAAATTTGAGTAGAAATTTGTATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAAAAGTGAGCCGAAATCGATATTTTTATGTGAAAAATCCATATTCTGRGCTGAAAATCTAGAATTTTTTAGTTAAAAAATTACAAAATTTAGGAGCAAAACTCCATTTTTTAAGCTCGATTTTGAGATTTTTAGGTCCAAAATCAAGTATTTTAAAGTATAAAATGTGTATTTTTAGAGAATCGGTGGATTTTTGGTCTAAAATGCACTATTTTAGATCTAAAAATTGTGAATTTAGAAGCCGAAATTCCGATTTTCAGGCCAAAGTTGGACATTTTTCCTTCTGGAAAAATTAGTGAATTTGGGTAGAAATTTGTATTTTCAGAGTTGAGAATGAGCTAAAAATCGTGTTTTTTAGGTCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAGTGAGCTACAAATCGTATTTTTCAGGTATGGATCCGGCTAGAAATTGAGCATTTTTGGGCTCAAAATTTACCAAATTTAAGAGCAAAACTTTATTTTTTAAAGCTCGATTTTTGATTTTTTTTTTTGAGATTTTCAGGTCCAAAATAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNTGG</site>
                <isoschizomers>
                    <enzyme>AccB7I</enzyme>
                    <enzyme>PflBI</enzyme>
                    <enzyme>PflMI</enzyme>
                    <enzyme>Van91I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>504 375 121</canonical_bands>
                <polymorphic_bands>879 121</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>126 97 77 68 65 63 49 47 44 40 37 34 33 32 32 32 30 30 22 22 20</canonical_bands>
                <polymorphic_bands>126 105 97 77 68 63 49 47 44 37 34 33 32 32 32 30 30 22 22 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCCTTCTGGAAAAAGTAATAA</pcr_primer_p1>
		<pcr_primer_p2>AAATCTCAAAATCGAGCTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCCTTCTGGAAAAAGTAATAAATTTGAGTAGAAATTTGTATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAAAAGTGAGCCGAAATCGATATTTTTATGTGAAAAATCCATATTCTGGGCTGAAAATCTAGAATTTTTTAGTTAAAAAATTACAAAATTTAGGAGCAAAACTCCATTTTTTAAGCTCGATTTTGAGATTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCCTTCTGGAAAAAGTAATAAATTTGAGTAGAAATTTGTATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAAAAGTGAGCCGAAATCGATATTTTTATGTGAAAAATCCATATTCTGRGCTGAAAATCTAGAATTTTTTAGTTAAAAAATTACAAAATTTAGGAGCAAAACTCCATTTTTTAAGCTCGATTTTGAGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17120</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>692697</contig_pos>
        <strand></strand>
        <context>GATATTTTTA[T/A]GTGAAAAATC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAAGCGGAATTTTTTAGAAAAAAAAAAGTGAGCCGAAATCGATATTTTTA</left_flank>
        <right_flank>GTGAAAAATCCATATTCTGGGCTGAAAATCTAGAATTTTTTAGTTAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGAGAACGTTCTGGAAGAAAAGTATAGAATTTTGGTTGAAAATTGGCATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATGTCCGAATCAGGCTAGAAATTGAGCATTTTTGGGCTACAAATCTACCAAATTTAGGAGCAAAATTGGCTTTTTTTGCTCCGAAACTCACTTTTTTAGCTGGATTTTGAGATTTTTAGCGTCTAATTTCGTATTTTTAGGTCCAAAATAGTATTTTTAGAGCTCAAATCAATTGGATTTTCGGTCGAAAATGCACTATTTTTGATCTAAAAATTGTGAATTCTCAGAAGCCGAAATTCAGATTTTCAATCCAAAATTGGAAATTTTTCCTTCTGGAAAAAGTAATAAATTTGAGTAGAAATTTGTATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAAAAGTGAGCCGAAATCGATATTTTTATGTGAAAAATCCATATTCTGGGCTGAAAATCTAGAATTTTTTAGTTAAAAAATTACAAAATTTAGGAGCAAAACTCCATTTTTTAAGCTCGATTTTGAGATTTTTAGGTCCAAAATCAAGTATTTTAAAGTATAAAATGTGTATTTTTAGAGAATCGGTGGATTTTTGGTCTAAAATGCACTATTTTAGATCTAAAAATTGTGAATTTAGAAGCCGAAATTCCGATTTTCAGGCCAAAGTTGGACATTTTTCCTTCTGGAAAAATTAGTGAATTTGGGTAGAAATTTGTATTTTCAGAGTTGAGAATGAGCTAAAAATCGTGTTTTTTAGGTCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAGTGAGCTACAAATCGTATTTTTCAGGTATGGATCCGGCTAGAAATTGAGCATTTTTGGGCTCAAAATTTACCAAATTTAAGAGCAAAACTTTATTTTTTAAAGCTCGATTTTTGATTTTTTTTTTTGAGA</canonical>
            <polymorphic>ACGAGAACGTTCTGGAAGAAAAGTATAGAATTTTGGTTGAAAATTGGCATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATGTCCGAATCAGGCTAGAAATTGAGCATTTTTGGGCTACAAATCTACCAAATTTAGGAGCAAAATTGGCTTTTTTTGCTCCGAAACTCACTTTTTTAGCTGGATTTTGAGATTTTTAGCGTCTAATTTCGTATTTTTAGGTCCAAAATAGTATTTTTAGAGCTCAAATCAATTGGATTTTCGGTCGAAAATGCACTATTTTTGATCTAAAAATTGTGAATTCTCAGAAGCCGAAATTCAGATTTTCAATCCAAAATTGGAAATTTTTCCTTCTGGAAAAAGTAATAAATTTGAGTAGAAATTTGTATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAAAAGTGAGCCGAAATCGATATTTTTAWGTGAAAAATCCATATTCTGGGCTGAAAATCTAGAATTTTTTAGTTAAAAAATTACAAAATTTAGGAGCAAAACTCCATTTTTTAAGCTCGATTTTGAGATTTTTAGGTCCAAAATCAAGTATTTTAAAGTATAAAATGTGTATTTTTAGAGAATCGGTGGATTTTTGGTCTAAAATGCACTATTTTAGATCTAAAAATTGTGAATTTAGAAGCCGAAATTCCGATTTTCAGGCCAAAGTTGGACATTTTTCCTTCTGGAAAAATTAGTGAATTTGGGTAGAAATTTGTATTTTCAGAGTTGAGAATGAGCTAAAAATCGTGTTTTTTAGGTCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAGTGAGCTACAAATCGTATTTTTCAGGTATGGATCCGGCTAGAAATTGAGCATTTTTGGGCTCAAAATTTACCAAATTTAAGAGCAAAACTTTATTTTTTAAAGCTCGATTTTTGATTTTTTTTTTTGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCTTCTGGAAAAAGTAATAA</pcr_primer_p1>
		<pcr_primer_p2>AAATCTCAAAATCGAGCTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCCTTCTGGAAAAAGTAATAAATTTGAGTAGAAATTTGTATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAAAAGTGAGCCGAAATCGATATTTTTATGTGAAAAATCCATATTCTGGGCTGAAAATCTAGAATTTTTTAGTTAAAAAATTACAAAATTTAGGAGCAAAACTCCATTTTTTAAGCTCGATTTTGAGATTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCCTTCTGGAAAAAGTAATAAATTTGAGTAGAAATTTGTATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAAAAGTGAGCCGAAATCGATATTTTTAWGTGAAAAATCCATATTCTGGGCTGAAAATCTAGAATTTTTTAGTTAAAAAATTACAAAATTTAGGAGCAAAACTCCATTTTTTAAGCTCGATTTTGAGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17121</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>692578</contig_pos>
        <strand>+</strand>
        <context>AATAAATTTG[A/G]GTAGAAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCAATCCAAAATTGGAAATTTTTCCTTCTGGAAAAAGTAATAAATTTG</left_flank>
        <right_flank>GTAGAAATTTGTATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCAAAAACGTTATTCGTCGATTCGAATTCGTGAAGTGAGTGTGGCATGGATACGGTATTCGGTGTCGTTGGATTCGCCGCCGTTCGTATTGAGGGGGCAGAGTTAACGGGACATGGGACGAGAACGTTCTGGAAGAAAAGTATAGAATTTTGGTTGAAAATTGGCATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATGTCCGAATCAGGCTAGAAATTGAGCATTTTTGGGCTACAAATCTACCAAATTTAGGAGCAAAATTGGCTTTTTTTGCTCCGAAACTCACTTTTTTAGCTGGATTTTGAGATTTTTAGCGTCTAATTTCGTATTTTTAGGTCCAAAATAGTATTTTTAGAGCTCAAATCAATTGGATTTTCGGTCGAAAATGCACTATTTTTGATCTAAAAATTGTGAATTCTCAGAAGCCGAAATTCAGATTTTCAATCCAAAATTGGAAATTTTTCCTTCTGGAAAAAGTAATAAATTTGAGTAGAAATTTGTATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAAAAGTGAGCCGAAATCGATATTTTTATGTGAAAAATCCATATTCTGGGCTGAAAATCTAGAATTTTTTAGTTAAAAAATTACAAAATTTAGGAGCAAAACTCCATTTTTTAAGCTCGATTTTGAGATTTTTAGGTCCAAAATCAAGTATTTTAAAGTATAAAATGTGTATTTTTAGAGAATCGGTGGATTTTTGGTCTAAAATGCACTATTTTAGATCTAAAAATTGTGAATTTAGAAGCCGAAATTCCGATTTTCAGGCCAAAGTTGGACATTTTTCCTTCTGGAAAAATTAGTGAATTTGGGTAGAAATTTGTATTTTCAGAGTTGAGAATGAGCTAAAAATCGTGTTTTTTAGGTCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAGTGAGCTACAA</canonical>
            <polymorphic>CATCAAAAACGTTATTCGTCGATTCGAATTCGTGAAGTGAGTGTGGCATGGATACGGTATTCGGTGTCGTTGGATTCGCCGCCGTTCGTATTGAGGGGGCAGAGTTAACGGGACATGGGACGAGAACGTTCTGGAAGAAAAGTATAGAATTTTGGTTGAAAATTGGCATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATGTCCGAATCAGGCTAGAAATTGAGCATTTTTGGGCTACAAATCTACCAAATTTAGGAGCAAAATTGGCTTTTTTTGCTCCGAAACTCACTTTTTTAGCTGGATTTTGAGATTTTTAGCGTCTAATTTCGTATTTTTAGGTCCAAAATAGTATTTTTAGAGCTCAAATCAATTGGATTTTCGGTCGAAAATGCACTATTTTTGATCTAAAAATTGTGAATTCTCAGAAGCCGAAATTCAGATTTTCAATCCAAAATTGGAAATTTTTCCTTCTGGAAAAAGTAATAAATTTGRGTAGAAATTTGTATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAAAAGTGAGCCGAAATCGATATTTTTATGTGAAAAATCCATATTCTGGGCTGAAAATCTAGAATTTTTTAGTTAAAAAATTACAAAATTTAGGAGCAAAACTCCATTTTTTAAGCTCGATTTTGAGATTTTTAGGTCCAAAATCAAGTATTTTAAAGTATAAAATGTGTATTTTTAGAGAATCGGTGGATTTTTGGTCTAAAATGCACTATTTTAGATCTAAAAATTGTGAATTTAGAAGCCGAAATTCCGATTTTCAGGCCAAAGTTGGACATTTTTCCTTCTGGAAAAATTAGTGAATTTGGGTAGAAATTTGTATTTTCAGAGTTGAGAATGAGCTAAAAATCGTGTTTTTTAGGTCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAGTGAGCTACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGATTTTTAGCGTCTAATTTC</pcr_primer_p1>
		<pcr_primer_p2>ATTCGGATAAAAACCACGAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TGAGATTTTTAGCGTCTAATTTCGTATTTTTAGGTCCAAAATAGTATTTTTAGAGCTCAAATCAATTGGATTTTCGGTCGAAAATGCACTATTTTTGATCTAAAAATTGTGAATTCTCAGAAGCCGAAATTCAGATTTTCAATCCAAAATTGGAAATTTTTCCTTCTGGAAAAAGTAATAAATTTGAGTAGAAATTTGTATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATCCGAAT</canonical_amplicon>
		<polymorphic_amplicon>TGAGATTTTTAGCGTCTAATTTCGTATTTTTAGGTCCAAAATAGTATTTTTAGAGCTCAAATCAATTGGATTTTCGGTCGAAAATGCACTATTTTTGATCTAAAAATTGTGAATTCTCAGAAGCCGAAATTCAGATTTTCAATCCAAAATTGGAAATTTTTCCTTCTGGAAAAAGTAATAAATTTGRGTAGAAATTTGTATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATCCGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17122</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>692508</contig_pos>
        <strand>+</strand>
        <context>TTGTGAATTC[C/T]CAGAAGCCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGATTTTCGGTCGAAAATGCACTATTTTTGATCTAAAAATTGTGAATTC</left_flank>
        <right_flank>CAGAAGCCGAAATTCAGATTTTCAATCCAAAATTGGAAATTTTTCCTTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGTATTTTAAGCCATTTTTCTCACCTCCTGCAACGCTTTCTTATCATCCAGAGCCAAAATTTGCATATCATCAAAAACGTTATTCGTCGATTCGAATTCGTGAAGTGAGTGTGGCATGGATACGGTATTCGGTGTCGTTGGATTCGCCGCCGTTCGTATTGAGGGGGCAGAGTTAACGGGACATGGGACGAGAACGTTCTGGAAGAAAAGTATAGAATTTTGGTTGAAAATTGGCATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATGTCCGAATCAGGCTAGAAATTGAGCATTTTTGGGCTACAAATCTACCAAATTTAGGAGCAAAATTGGCTTTTTTTGCTCCGAAACTCACTTTTTTAGCTGGATTTTGAGATTTTTAGCGTCTAATTTCGTATTTTTAGGTCCAAAATAGTATTTTTAGAGCTCAAATCAATTGGATTTTCGGTCGAAAATGCACTATTTTTGATCTAAAAATTGTGAATTCTCAGAAGCCGAAATTCAGATTTTCAATCCAAAATTGGAAATTTTTCCTTCTGGAAAAAGTAATAAATTTGAGTAGAAATTTGTATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAAAAGTGAGCCGAAATCGATATTTTTATGTGAAAAATCCATATTCTGGGCTGAAAATCTAGAATTTTTTAGTTAAAAAATTACAAAATTTAGGAGCAAAACTCCATTTTTTAAGCTCGATTTTGAGATTTTTAGGTCCAAAATCAAGTATTTTAAAGTATAAAATGTGTATTTTTAGAGAATCGGTGGATTTTTGGTCTAAAATGCACTATTTTAGATCTAAAAATTGTGAATTTAGAAGCCGAAATTCCGATTTTCAGGCCAAAGTTGGACATTTTTCCTTCTGGAAAAATTAGTGAATTTGGGTAGAAATTTGTATTTTCAGAGTTGAGAATGAGCT</canonical>
            <polymorphic>TGAGTATTTTAAGCCATTTTTCTCACCTCCTGCAACGCTTTCTTATCATCCAGAGCCAAAATTTGCATATCATCAAAAACGTTATTCGTCGATTCGAATTCGTGAAGTGAGTGTGGCATGGATACGGTATTCGGTGTCGTTGGATTCGCCGCCGTTCGTATTGAGGGGGCAGAGTTAACGGGACATGGGACGAGAACGTTCTGGAAGAAAAGTATAGAATTTTGGTTGAAAATTGGCATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATGTCCGAATCAGGCTAGAAATTGAGCATTTTTGGGCTACAAATCTACCAAATTTAGGAGCAAAATTGGCTTTTTTTGCTCCGAAACTCACTTTTTTAGCTGGATTTTGAGATTTTTAGCGTCTAATTTCGTATTTTTAGGTCCAAAATAGTATTTTTAGAGCTCAAATCAATTGGATTTTCGGTCGAAAATGCACTATTTTTGATCTAAAAATTGTGAATTCYCAGAAGCCGAAATTCAGATTTTCAATCCAAAATTGGAAATTTTTCCTTCTGGAAAAAGTAATAAATTTGAGTAGAAATTTGTATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAAAAGTGAGCCGAAATCGATATTTTTATGTGAAAAATCCATATTCTGGGCTGAAAATCTAGAATTTTTTAGTTAAAAAATTACAAAATTTAGGAGCAAAACTCCATTTTTTAAGCTCGATTTTGAGATTTTTAGGTCCAAAATCAAGTATTTTAAAGTATAAAATGTGTATTTTTAGAGAATCGGTGGATTTTTGGTCTAAAATGCACTATTTTAGATCTAAAAATTGTGAATTTAGAAGCCGAAATTCCGATTTTCAGGCCAAAGTTGGACATTTTTCCTTCTGGAAAAATTAGTGAATTTGGGTAGAAATTTGTATTTTCAGAGTTGAGAATGAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>286 282 144 109 76 73 16 14</canonical_bands>
                <polymorphic_bands>286 282 158 109 76 73 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGCTGGATTTTGAGATTTTTA</pcr_primer_p1>
		<pcr_primer_p2>ACGATTTTTAGCTCATTTTTAACT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTAGCTGGATTTTGAGATTTTTAGCGTCTAATTTCGTATTTTTAGGTCCAAAATAGTATTTTTAGAGCTCAAATCAATTGGATTTTCGGTCGAAAATGCACTATTTTTGATCTAAAAATTGTGAATTCTCAGAAGCCGAAATTCAGATTTTCAATCCAAAATTGGAAATTTTTCCTTCTGGAAAAAGTAATAAATTTGAGTAGAAATTTGTATTTTTAGAGTTAAAAATGAGCTAAAAATCGT</canonical_amplicon>
		<polymorphic_amplicon>TTAGCTGGATTTTGAGATTTTTAGCGTCTAATTTCGTATTTTTAGGTCCAAAATAGTATTTTTAGAGCTCAAATCAATTGGATTTTCGGTCGAAAATGCACTATTTTTGATCTAAAAATTGTGAATTCYCAGAAGCCGAAATTCAGATTTTCAATCCAAAATTGGAAATTTTTCCTTCTGGAAAAAGTAATAAATTTGAGTAGAAATTTGTATTTTTAGAGTTAAAAATGAGCTAAAAATCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17123</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>692340</contig_pos>
        <strand>+</strand>
        <context>TACCAAATTT[A/C]GGAGCAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGAATCAGGCTAGAAATTGAGCATTTTTGGGCTACAAATCTACCAAATTT</left_flank>
        <right_flank>GGAGCAAAATTGGCTTTTTTTGCTCCGAAACTCACTTTTTTAGCTGGATT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTCAGGTCCAAAAAGGCTCCAAATTTGAGATTTTTAGGTCCAAAATTTGCATTTTTTGAGTAGAAAATTTGCTTTTTTTAGCGTCATATTTCCAGTATTTCGAAGCTTATTTTTGACAGCTTCTGGTCCAATTTTTGTCTTTTTTGAGCCAAGAAAACGCATTTTTGAGTATTTTAAGCCATTTTTCTCACCTCCTGCAACGCTTTCTTATCATCCAGAGCCAAAATTTGCATATCATCAAAAACGTTATTCGTCGATTCGAATTCGTGAAGTGAGTGTGGCATGGATACGGTATTCGGTGTCGTTGGATTCGCCGCCGTTCGTATTGAGGGGGCAGAGTTAACGGGACATGGGACGAGAACGTTCTGGAAGAAAAGTATAGAATTTTGGTTGAAAATTGGCATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATGTCCGAATCAGGCTAGAAATTGAGCATTTTTGGGCTACAAATCTACCAAATTTAGGAGCAAAATTGGCTTTTTTTGCTCCGAAACTCACTTTTTTAGCTGGATTTTGAGATTTTTAGCGTCTAATTTCGTATTTTTAGGTCCAAAATAGTATTTTTAGAGCTCAAATCAATTGGATTTTCGGTCGAAAATGCACTATTTTTGATCTAAAAATTGTGAATTCTCAGAAGCCGAAATTCAGATTTTCAATCCAAAATTGGAAATTTTTCCTTCTGGAAAAAGTAATAAATTTGAGTAGAAATTTGTATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAAAAGTGAGCCGAAATCGATATTTTTATGTGAAAAATCCATATTCTGGGCTGAAAATCTAGAATTTTTTAGTTAAAAAATTACAAAATTTAGGAGCAAAACTCCATTTTTTAAGCTCGATTTTGAGATTTTTAGGTCCAAAATCAAGTATTTTAAAGTATAAAATGTGTAT</canonical>
            <polymorphic>ATTTTCAGGTCCAAAAAGGCTCCAAATTTGAGATTTTTAGGTCCAAAATTTGCATTTTTTGAGTAGAAAATTTGCTTTTTTTAGCGTCATATTTCCAGTATTTCGAAGCTTATTTTTGACAGCTTCTGGTCCAATTTTTGTCTTTTTTGAGCCAAGAAAACGCATTTTTGAGTATTTTAAGCCATTTTTCTCACCTCCTGCAACGCTTTCTTATCATCCAGAGCCAAAATTTGCATATCATCAAAAACGTTATTCGTCGATTCGAATTCGTGAAGTGAGTGTGGCATGGATACGGTATTCGGTGTCGTTGGATTCGCCGCCGTTCGTATTGAGGGGGCAGAGTTAACGGGACATGGGACGAGAACGTTCTGGAAGAAAAGTATAGAATTTTGGTTGAAAATTGGCATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATGTCCGAATCAGGCTAGAAATTGAGCATTTTTGGGCTACAAATCTACCAAATTTMGGAGCAAAATTGGCTTTTTTTGCTCCGAAACTCACTTTTTTAGCTGGATTTTGAGATTTTTAGCGTCTAATTTCGTATTTTTAGGTCCAAAATAGTATTTTTAGAGCTCAAATCAATTGGATTTTCGGTCGAAAATGCACTATTTTTGATCTAAAAATTGTGAATTCTCAGAAGCCGAAATTCAGATTTTCAATCCAAAATTGGAAATTTTTCCTTCTGGAAAAAGTAATAAATTTGAGTAGAAATTTGTATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAAAAGTGAGCCGAAATCGATATTTTTATGTGAAAAATCCATATTCTGGGCTGAAAATCTAGAATTTTTTAGTTAAAAAATTACAAAATTTAGGAGCAAAACTCCATTTTTTAAGCTCGATTTTGAGATTTTTAGGTCCAAAATCAAGTATTTTAAAGTATAAAATGTGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTCTGGAAGAAAAGTATAGAA</pcr_primer_p1>
		<pcr_primer_p2>CTATTTTGGACCTAAAAATACGA</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>CGTTCTGGAAGAAAAGTATAGAATTTTGGTTGAAAATTGGCATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATGTCCGAATCAGGCTAGAAATTGAGCATTTTTGGGCTACAAATCTACCAAATTTAGGAGCAAAATTGGCTTTTTTTGCTCCGAAACTCACTTTTTTAGCTGGATTTTGAGATTTTTAGCGTCTAATTTCGTATTTTTAGGTCCAAAATAG</canonical_amplicon>
		<polymorphic_amplicon>CGTTCTGGAAGAAAAGTATAGAATTTTGGTTGAAAATTGGCATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATGTCCGAATCAGGCTAGAAATTGAGCATTTTTGGGCTACAAATCTACCAAATTTMGGAGCAAAATTGGCTTTTTTTGCTCCGAAACTCACTTTTTTAGCTGGATTTTGAGATTTTTAGCGTCTAATTTCGTATTTTTAGGTCCAAAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17124</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>887986</contig_pos>
        <strand></strand>
        <context>GATCTTTTCT[T/C]GACATTGCGC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTGAAGAAAATTGCATTTTCCAAGCAACGACTCACTTTTAGATCTTTTCT</left_flank>
        <right_flank>GACATTGCGCTCAATCGGGATACATAGTTGGCGAGCACTGGGAACTTCCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTTCTCGAAGAATTCCAGACAATTCGAAAGTGCCGTGTCCACTGAATTCATCTCATCCGGTTTCATGTATTGACAGAGGGTCACCACCGACTGAAGCACCAATTCCACTTTGTTGATTCGTTTTTCTTCCTGAAAAAAAAAGGAATACCGTAAAACCTGTATTAGAAGGGCCTCTCTAATAGAAGGGCCCTCTCCGGAGGTTTCTTGGAACAATAGAAGGGCCGGCCCTTCTAATACAGGTTTTACGGTGATTTCGAAATTTTCGTGAAGTTAGAAATTTTGGAAATCTGAAAGTTCAGATTCCGAATTTTAGGAACTTTTTTTAAAATTTTCGAAATTTCCCCAACTTTGATTTTTCTGAAATTTCTTTTTTTTTCGAATATTCGATTTTTCTCTGGAATTTCTGAATTTTTCGAAAATTTCGGGTTTTCCGGAATTTGTCAGTTTTTGAAGAAAATTGCATTTTCCAAGCAACGACTCACTTTTAGATCTTTTCTTGACATTGCGCTCAATCGGGATACATAGTTGGCGAGCACTGGGAACTTCCTGAAAAGTCATCGTAGCGGTCCCTGGTGGCCTAACTTTTGCAAGTTGAGTTTTCTAGGCCAACGAATTTTATGACCTAGAAATGACCTGATGGGTTTTCTAGGCCATTTTAACATGCTGACCTAGAAAATTCAACTTGAAAAAGTTAGGTCATCATCTTTTGCTAGTGAGTTTTCTAGTTGCCTTACTTTTGCAAGTTGAATTTTTTAGACCACCAACTTTTATGGCTTATAAATTACCTGATATACCTAGTGGGGTTTCTAGGCCATTTCAACATGGTGGCCTAGAAAATTCAACTTGCAAAAGCTAGGTCGTCATGGTAAAATGGCCTCATACTACCCTGGTATGTTTTCTAGGCCATTCTAACATGGTGGCTCTAAAACCCAACTGGCGAAAGTTATGCCACCATGTGACAATAGCCTATAAAACCAACCAGGCGAATATCAAACCAT</canonical>
            <polymorphic>TGCTTCTCGAAGAATTCCAGACAATTCGAAAGTGCCGTGTCCACTGAATTCATCTCATCCGGTTTCATGTATTGACAGAGGGTCACCACCGACTGAAGCACCAATTCCACTTTGTTGATTCGTTTTTCTTCCTGAAAAAAAAAGGAATACCGTAAAACCTGTATTAGAAGGGCCTCTCTAATAGAAGGGCCCTCTCCGGAGGTTTCTTGGAACAATAGAAGGGCCGGCCCTTCTAATACAGGTTTTACGGTGATTTCGAAATTTTCGTGAAGTTAGAAATTTTGGAAATCTGAAAGTTCAGATTCCGAATTTTAGGAACTTTTTTTAAAATTTTCGAAATTTCCCCAACTTTGATTTTTCTGAAATTTCTTTTTTTTTCGAATATTCGATTTTTCTCTGGAATTTCTGAATTTTTCGAAAATTTCGGGTTTTCCGGAATTTGTCAGTTTTTGAAGAAAATTGCATTTTCCAAGCAACGACTCACTTTTAGATCTTTTCTYGACATTGCGCTCAATCGGGATACATAGTTGGCGAGCACTGGGAACTTCCTGAAAAGTCATCGTAGCGGTCCCTGGTGGCCTAACTTTTGCAAGTTGAGTTTTCTAGGCCAACGAATTTTATGACCTAGAAATGACCTGATGGGTTTTCTAGGCCATTTTAACATGCTGACCTAGAAAATTCAACTTGAAAAAGTTAGGTCATCATCTTTTGCTAGTGAGTTTTCTAGTTGCCTTACTTTTGCAAGTTGAATTTTTTAGACCACCAACTTTTATGGCTTATAAATTACCTGATATACCTAGTGGGGTTTCTAGGCCATTTCAACATGGTGGCCTAGAAAATTCAACTTGCAAAAGCTAGGTCGTCATGGTAAAATGGCCTCATACTACCCTGGTATGTTTTCTAGGCCATTCTAACATGGTGGCTCTAAAACCCAACTGGCGAAAGTTATGCCACCATGTGACAATAGCCTATAAAACCAACCAGGCGAATATCAAACCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCAACTTTGATTTTTCTGA</pcr_primer_p1>
		<pcr_primer_p2>CTACGATGACTTTTCAGGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>222</pcr_amplicon_size>
		<canonical_amplicon>CCCAACTTTGATTTTTCTGAAATTTCTTTTTTTTTCGAATATTCGATTTTTCTCTGGAATTTCTGAATTTTTCGAAAATTTCGGGTTTTCCGGAATTTGTCAGTTTTTGAAGAAAATTGCATTTTCCAAGCAACGACTCACTTTTAGATCTTTTCTTGACATTGCGCTCAATCGGGATACATAGTTGGCGAGCACTGGGAACTTCCTGAAAAGTCATCGTAG</canonical_amplicon>
		<polymorphic_amplicon>CCCAACTTTGATTTTTCTGAAATTTCTTTTTTTTTCGAATATTCGATTTTTCTCTGGAATTTCTGAATTTTTCGAAAATTTCGGGTTTTCCGGAATTTGTCAGTTTTTGAAGAAAATTGCATTTTCCAAGCAACGACTCACTTTTAGATCTTTTCTYGACATTGCGCTCAATCGGGATACATAGTTGGCGAGCACTGGGAACTTCCTGAAAAGTCATCGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17125</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>890137</contig_pos>
        <strand>+</strand>
        <context>GCACTCGCAA[C/T]GACGACACCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATCTCCGAATACACGAATCCCGCGATTCGATATTGCTCAGCACTCGCAA</left_flank>
        <right_flank>GACGACACCATGCCCACTTTGTACTGTAGATAGAGCAGCGAGTCCGAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCAACTATGGTACCTATGGTGACAATGGTAACTATGGTAACTATGGTACTATGGTAGCTTTGGTAACTATGGTAGCTATGGTACTATGGTAGCTTTGGTAACTATGGTAAATATGGTAGCTATGGTACTCGTGGTAATTATGGTGACTATGGTAACTATGGTAACTATGGTACCTATGATGACTATGGTAACTATGGTAACTATGGTATCTATGGTGACTATGGTAACTATGGTGACTATGGCAACTATGGTACCTATGGTACCTATGGTGATTATGGTAACTATGGTAACTATGATGACTATGGTAACTATGGTAACTAGGGCAGTTTTCGACGATTTTTAAGCTCAAAAGGTCCATACCTTCTCCCTCTCCTCTTCACATATATCCTCGGACAACTGTGCACTCGGATCCAGTGCCATCTCAACGATTCGATCCACAATCTGCTCACATCTCCGAATACACGAATCCCGCGATTCGATATTGCTCAGCACTCGCAATGACGACACCATGCCCACTTTGTACTGTAGATAGAGCAGCGAGTCCGAGAGAAGTTCCAGAAGACGTTGAGCGGTTCGACGGCGGATTGGCGACGCGTTCGCACAGCACGTCTGGAGGAGAGCTCGTGCGAAGAGGTAGCCGATTCGAGTGCCTCCTTGGGTTTCGAGCGCACTGATTAGAGAGACGATTTGCGTGTCGTAGTCATCCGTGTCGGTGGCCTAAAAATTTAGGAATTTTGAGGGATTCTAGGCCAGCATTTTTTTTCGTAAAATTTATAGCCGCCAACTTTGAGCCAGGAAACAGGGTCTCGGCTTTTCGGGACCGGTATTTCTTAGTGTTTTCTAGGACATTTCAACCTGCTGGCCTAACTTTTTCAGGTAAAGTTTTCTAGACTATCATGTTAAAAGGACCTAGAAATGGTTTGATATTCGCCTGGTTGGTTTTCTAGGCTATTGTAACATGCTGGCCTAACTTTCGCAAGTTGGGTTTTCTAGGCCAAC</canonical>
            <polymorphic>GGCAACTATGGTACCTATGGTGACAATGGTAACTATGGTAACTATGGTACTATGGTAGCTTTGGTAACTATGGTAGCTATGGTACTATGGTAGCTTTGGTAACTATGGTAAATATGGTAGCTATGGTACTCGTGGTAATTATGGTGACTATGGTAACTATGGTAACTATGGTACCTATGATGACTATGGTAACTATGGTAACTATGGTATCTATGGTGACTATGGTAACTATGGTGACTATGGCAACTATGGTACCTATGGTACCTATGGTGATTATGGTAACTATGGTAACTATGATGACTATGGTAACTATGGTAACTAGGGCAGTTTTCGACGATTTTTAAGCTCAAAAGGTCCATACCTTCTCCCTCTCCTCTTCACATATATCCTCGGACAACTGTGCACTCGGATCCAGTGCCATCTCAACGATTCGATCCACAATCTGCTCACATCTCCGAATACACGAATCCCGCGATTCGATATTGCTCAGCACTCGCAAYGACGACACCATGCCCACTTTGTACTGTAGATAGAGCAGCGAGTCCGAGAGAAGTTCCAGAAGACGTTGAGCGGTTCGACGGCGGATTGGCGACGCGTTCGCACAGCACGTCTGGAGGAGAGCTCGTGCGAAGAGGTAGCCGATTCGAGTGCCTCCTTGGGTTTCGAGCGCACTGATTAGAGAGACGATTTGCGTGTCGTAGTCATCCGTGTCGGTGGCCTAAAAATTTAGGAATTTTGAGGGATTCTAGGCCAGCATTTTTTTTCGTAAAATTTATAGCCGCCAACTTTGAGCCAGGAAACAGGGTCTCGGCTTTTCGGGACCGGTATTTCTTAGTGTTTTCTAGGACATTTCAACCTGCTGGCCTAACTTTTTCAGGTAAAGTTTTCTAGACTATCATGTTAAAAGGACCTAGAAATGGTTTGATATTCGCCTGGTTGGTTTTCTAGGCTATTGTAACATGCTGGCCTAACTTTCGCAAGTTGGGTTTTCTAGGCCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGCTCACATCTCCGAATAC</pcr_primer_p1>
		<pcr_primer_p2>GCAAATCGTCTCTCTAATCAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGCTCACATCTCCGAATACACGAATCCCGCGATTCGATATTGCTCAGCACTCGCAATGACGACACCATGCCCACTTTGTACTGTAGATAGAGCAGCGAGTCCGAGAGAAGTTCCAGAAGACGTTGAGCGGTTCGACGGCGGATTGGCGACGCGTTCGCACAGCACGTCTGGAGGAGAGCTCGTGCGAAGAGGTAGCCGATTCGAGTGCCTCCTTGGGTTTCGAGCGCACTGATTAGAGAGACGATTTGC</canonical_amplicon>
		<polymorphic_amplicon>CTGCTCACATCTCCGAATACACGAATCCCGCGATTCGATATTGCTCAGCACTCGCAAYGACGACACCATGCCCACTTTGTACTGTAGATAGAGCAGCGAGTCCGAGAGAAGTTCCAGAAGACGTTGAGCGGTTCGACGGCGGATTGGCGACGCGTTCGCACAGCACGTCTGGAGGAGAGCTCGTGCGAAGAGGTAGCCGATTCGAGTGCCTCCTTGGGTTTCGAGCGCACTGATTAGAGAGACGATTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17126</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>1000335</contig_pos>
        <strand>+</strand>
        <context>AAAAATAGGG[A/G]AAAAGTCAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAAAAACTTTATTAGCAAAAATCAGCATATTAAGGTCGAAAAATAGGG</left_flank>
        <right_flank>AAAAGTCAGATTTATCGATAATTTTAGTGTTCGACATCCGGTTTATCAGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGGCGGTGTCCTCCTCGGTGGCTTTTGTCACCAATTCGATGGCCTTCTGAAAAAATTGCGAACATTTTAAATTTTCAGGTACGAAATCGAGTTTTTCATCGATTTCTCACAGAAAAATCCGTTTTTAATGCTAACAAACCTGTAGAGCAGTGTTCGACATTTCAAGTCGATTGGAGAGCGAAGATGGGCGACGCTGAAGAAAAAGAGGTTAAAAATCGATGGAAAACTAGTTTAGAAGCTGAAAAACGCATACAGAATGAGTGTAGATTGGGTGTAACAATAGCGGTGAAAATCAAGGTCAAATTTTTCAAAAAAAGGAATTTTTCTCAAAAAAAAGTCGAATTTTAAAGGTATAAAATAATCAGTTTTCTAGCGAAAAAAAAAGCAAAAAATCATCATAAGGAAGTGGTAAAAATTTCGAAATTTGACAAAAAAAAATAGGAAAAAATTCAAAAACTTTATTAGCAAAAATCAGCATATTAAGGTCGAAAAATAGGGGAAAAGTCAGATTTATCGATAATTTTAGTGTTCGACATCCGGTTTATCAGCGAAATTTGCCATTTTTATCGATTGTGAAATCAATATTAAAGCGAGAAAATGAGTCATACGCTTTTCGGTTTTTTCCTCGCTTGGCGCCTCTCGCGATCCTTGGTGAAAACGGAAAGTGCGTCAGTGGCGATGGCTGGCGCGCTTTGTAATATTCCGGCGGGAAGGTGACAAATTAGTGGGTCTTGCTGATAAGGGGCTTTGTTTTGGATTTTAAATTTTAAAGAAAATTAAAGAAGGGAAACTGAGGAGTATTTTAAGCTATCGAGCTAAAAGATTGATAAAGGAAGAAGAGAGTTACAGAGCTTAGAAGTTGGAGTATTTTTTATTTACCGTATTTCTAAAAGCCTCCATGTTCCAGAAAAATTGTAGGGGTGAAGTAGATCAGAAAATACACATTACTTAGGTTTTCCAGTCATTTTCTCTTTGTTTTTTCCATGTCAAAGTTCACGA</canonical>
            <polymorphic>CCGGCGGTGTCCTCCTCGGTGGCTTTTGTCACCAATTCGATGGCCTTCTGAAAAAATTGCGAACATTTTAAATTTTCAGGTACGAAATCGAGTTTTTCATCGATTTCTCACAGAAAAATCCGTTTTTAATGCTAACAAACCTGTAGAGCAGTGTTCGACATTTCAAGTCGATTGGAGAGCGAAGATGGGCGACGCTGAAGAAAAAGAGGTTAAAAATCGATGGAAAACTAGTTTAGAAGCTGAAAAACGCATACAGAATGAGTGTAGATTGGGTGTAACAATAGCGGTGAAAATCAAGGTCAAATTTTTCAAAAAAAGGAATTTTTCTCAAAAAAAAGTCGAATTTTAAAGGTATAAAATAATCAGTTTTCTAGCGAAAAAAAAAGCAAAAAATCATCATAAGGAAGTGGTAAAAATTTCGAAATTTGACAAAAAAAAATAGGAAAAAATTCAAAAACTTTATTAGCAAAAATCAGCATATTAAGGTCGAAAAATAGGGRAAAAGTCAGATTTATCGATAATTTTAGTGTTCGACATCCGGTTTATCAGCGAAATTTGCCATTTTTATCGATTGTGAAATCAATATTAAAGCGAGAAAATGAGTCATACGCTTTTCGGTTTTTTCCTCGCTTGGCGCCTCTCGCGATCCTTGGTGAAAACGGAAAGTGCGTCAGTGGCGATGGCTGGCGCGCTTTGTAATATTCCGGCGGGAAGGTGACAAATTAGTGGGTCTTGCTGATAAGGGGCTTTGTTTTGGATTTTAAATTTTAAAGAAAATTAAAGAAGGGAAACTGAGGAGTATTTTAAGCTATCGAGCTAAAAGATTGATAAAGGAAGAAGAGAGTTACAGAGCTTAGAAGTTGGAGTATTTTTTATTTACCGTATTTCTAAAAGCCTCCATGTTCCAGAAAAATTGTAGGGGTGAAGTAGATCAGAAAATACACATTACTTAGGTTTTCCAGTCATTTTCTCTTTGTTTTTTCCATGTCAAAGTTCACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCATCATAAGGAAGTGGT</pcr_primer_p1>
		<pcr_primer_p2>AAAGCGTATGACTCATTTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCATCATAAGGAAGTGGTAAAAATTTCGAAATTTGACAAAAAAAAATAGGAAAAAATTCAAAAACTTTATTAGCAAAAATCAGCATATTAAGGTCGAAAAATAGGGGAAAAGTCAGATTTATCGATAATTTTAGTGTTCGACATCCGGTTTATCAGCGAAATTTGCCATTTTTATCGATTGTGAAATCAATATTAAAGCGAGAAAATGAGTCATACGCTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCATCATAAGGAAGTGGTAAAAATTTCGAAATTTGACAAAAAAAAATAGGAAAAAATTCAAAAACTTTATTAGCAAAAATCAGCATATTAAGGTCGAAAAATAGGGRAAAAGTCAGATTTATCGATAATTTTAGTGTTCGACATCCGGTTTATCAGCGAAATTTGCCATTTTTATCGATTGTGAAATCAATATTAAAGCGAGAAAATGAGTCATACGCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17127</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>1000370</contig_pos>
        <strand>+</strand>
        <context>TAGTGTTCGA[A/C]ATCCGGTTYA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGTCGAAAAATAGGGGAAAAGTCAGATTTATCGATAATTTTAGTGTTCGA</left_flank>
        <right_flank>ATCCGGTTTATCAGCGAAATTTGCCATTTTTATCGATTGTGAAATCAATA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGATGGCCTTCTGAAAAAATTGCGAACATTTTAAATTTTCAGGTACGAAATCGAGTTTTTCATCGATTTCTCACAGAAAAATCCGTTTTTAATGCTAACAAACCTGTAGAGCAGTGTTCGACATTTCAAGTCGATTGGAGAGCGAAGATGGGCGACGCTGAAGAAAAAGAGGTTAAAAATCGATGGAAAACTAGTTTAGAAGCTGAAAAACGCATACAGAATGAGTGTAGATTGGGTGTAACAATAGCGGTGAAAATCAAGGTCAAATTTTTCAAAAAAAGGAATTTTTCTCAAAAAAAAGTCGAATTTTAAAGGTATAAAATAATCAGTTTTCTAGCGAAAAAAAAAGCAAAAAATCATCATAAGGAAGTGGTAAAAATTTCGAAATTTGACAAAAAAAAATAGGAAAAAATTCAAAAACTTTATTAGCAAAAATCAGCATATTAAGGTCGAAAAATAGGGGAAAAGTCAGATTTATCGATAATTTTAGTGTTCGACATCCGGTTTATCAGCGAAATTTGCCATTTTTATCGATTGTGAAATCAATATTAAAGCGAGAAAATGAGTCATACGCTTTTCGGTTTTTTCCTCGCTTGGCGCCTCTCGCGATCCTTGGTGAAAACGGAAAGTGCGTCAGTGGCGATGGCTGGCGCGCTTTGTAATATTCCGGCGGGAAGGTGACAAATTAGTGGGTCTTGCTGATAAGGGGCTTTGTTTTGGATTTTAAATTTTAAAGAAAATTAAAGAAGGGAAACTGAGGAGTATTTTAAGCTATCGAGCTAAAAGATTGATAAAGGAAGAAGAGAGTTACAGAGCTTAGAAGTTGGAGTATTTTTTATTTACCGTATTTCTAAAAGCCTCCATGTTCCAGAAAAATTGTAGGGGTGAAGTAGATCAGAAAATACACATTACTTAGGTTTTCCAGTCATTTTCTCTTTGTTTTTTCCATGTCAAAGTTCACGAAAAAGAATTTCAGATGTCTGAAAATGTGTTTCAGA</canonical>
            <polymorphic>TTCGATGGCCTTCTGAAAAAATTGCGAACATTTTAAATTTTCAGGTACGAAATCGAGTTTTTCATCGATTTCTCACAGAAAAATCCGTTTTTAATGCTAACAAACCTGTAGAGCAGTGTTCGACATTTCAAGTCGATTGGAGAGCGAAGATGGGCGACGCTGAAGAAAAAGAGGTTAAAAATCGATGGAAAACTAGTTTAGAAGCTGAAAAACGCATACAGAATGAGTGTAGATTGGGTGTAACAATAGCGGTGAAAATCAAGGTCAAATTTTTCAAAAAAAGGAATTTTTCTCAAAAAAAAGTCGAATTTTAAAGGTATAAAATAATCAGTTTTCTAGCGAAAAAAAAAGCAAAAAATCATCATAAGGAAGTGGTAAAAATTTCGAAATTTGACAAAAAAAAATAGGAAAAAATTCAAAAACTTTATTAGCAAAAATCAGCATATTAAGGTCGAAAAATAGGGGAAAAGTCAGATTTATCGATAATTTTAGTGTTCGAMATCCGGTTTATCAGCGAAATTTGCCATTTTTATCGATTGTGAAATCAATATTAAAGCGAGAAAATGAGTCATACGCTTTTCGGTTTTTTCCTCGCTTGGCGCCTCTCGCGATCCTTGGTGAAAACGGAAAGTGCGTCAGTGGCGATGGCTGGCGCGCTTTGTAATATTCCGGCGGGAAGGTGACAAATTAGTGGGTCTTGCTGATAAGGGGCTTTGTTTTGGATTTTAAATTTTAAAGAAAATTAAAGAAGGGAAACTGAGGAGTATTTTAAGCTATCGAGCTAAAAGATTGATAAAGGAAGAAGAGAGTTACAGAGCTTAGAAGTTGGAGTATTTTTTATTTACCGTATTTCTAAAAGCCTCCATGTTCCAGAAAAATTGTAGGGGTGAAGTAGATCAGAAAATACACATTACTTAGGTTTTCCAGTCATTTTCTCTTTGTTTTTTCCATGTCAAAGTTCACGAAAAAGAATTTCAGATGTCTGAAAATGTGTTTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCATCATAAGGAAGTGGT</pcr_primer_p1>
		<pcr_primer_p2>AAAGCGTATGACTCATTTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCATCATAAGGAAGTGGTAAAAATTTCGAAATTTGACAAAAAAAAATAGGAAAAAATTCAAAAACTTTATTAGCAAAAATCAGCATATTAAGGTCGAAAAATAGGGGAAAAGTCAGATTTATCGATAATTTTAGTGTTCGACATCCGGTTTATCAGCGAAATTTGCCATTTTTATCGATTGTGAAATCAATATTAAAGCGAGAAAATGAGTCATACGCTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCATCATAAGGAAGTGGTAAAAATTTCGAAATTTGACAAAAAAAAATAGGAAAAAATTCAAAAACTTTATTAGCAAAAATCAGCATATTAAGGTCGAAAAATAGGGGAAAAGTCAGATTTATCGATAATTTTAGTGTTCGAMATCCGGTTTATCAGCGAAATTTGCCATTTTTATCGATTGTGAAATCAATATTAAAGCGAGAAAATGAGTCATACGCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17128</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>1000379</contig_pos>
        <strand>+</strand>
        <context>AMATCCGGTT[C/T]ATCAGCGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAGGGGAAAAGTCAGATTTATCGATAATTTTAGTGTTCGACATCCGGTT</left_flank>
        <right_flank>ATCAGCGAAATTTGCCATTTTTATCGATTGTGAAATCAATATTAAAGCGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCTGAAAAAATTGCGAACATTTTAAATTTTCAGGTACGAAATCGAGTTTTTCATCGATTTCTCACAGAAAAATCCGTTTTTAATGCTAACAAACCTGTAGAGCAGTGTTCGACATTTCAAGTCGATTGGAGAGCGAAGATGGGCGACGCTGAAGAAAAAGAGGTTAAAAATCGATGGAAAACTAGTTTAGAAGCTGAAAAACGCATACAGAATGAGTGTAGATTGGGTGTAACAATAGCGGTGAAAATCAAGGTCAAATTTTTCAAAAAAAGGAATTTTTCTCAAAAAAAAGTCGAATTTTAAAGGTATAAAATAATCAGTTTTCTAGCGAAAAAAAAAGCAAAAAATCATCATAAGGAAGTGGTAAAAATTTCGAAATTTGACAAAAAAAAATAGGAAAAAATTCAAAAACTTTATTAGCAAAAATCAGCATATTAAGGTCGAAAAATAGGGGAAAAGTCAGATTTATCGATAATTTTAGTGTTCGACATCCGGTTTATCAGCGAAATTTGCCATTTTTATCGATTGTGAAATCAATATTAAAGCGAGAAAATGAGTCATACGCTTTTCGGTTTTTTCCTCGCTTGGCGCCTCTCGCGATCCTTGGTGAAAACGGAAAGTGCGTCAGTGGCGATGGCTGGCGCGCTTTGTAATATTCCGGCGGGAAGGTGACAAATTAGTGGGTCTTGCTGATAAGGGGCTTTGTTTTGGATTTTAAATTTTAAAGAAAATTAAAGAAGGGAAACTGAGGAGTATTTTAAGCTATCGAGCTAAAAGATTGATAAAGGAAGAAGAGAGTTACAGAGCTTAGAAGTTGGAGTATTTTTTATTTACCGTATTTCTAAAAGCCTCCATGTTCCAGAAAAATTGTAGGGGTGAAGTAGATCAGAAAATACACATTACTTAGGTTTTCCAGTCATTTTCTCTTTGTTTTTTCCATGTCAAAGTTCACGAAAAAGAATTTCAGATGTCTGAAAATGTGTTTCAGATTTTTGAAA</canonical>
            <polymorphic>CTTCTGAAAAAATTGCGAACATTTTAAATTTTCAGGTACGAAATCGAGTTTTTCATCGATTTCTCACAGAAAAATCCGTTTTTAATGCTAACAAACCTGTAGAGCAGTGTTCGACATTTCAAGTCGATTGGAGAGCGAAGATGGGCGACGCTGAAGAAAAAGAGGTTAAAAATCGATGGAAAACTAGTTTAGAAGCTGAAAAACGCATACAGAATGAGTGTAGATTGGGTGTAACAATAGCGGTGAAAATCAAGGTCAAATTTTTCAAAAAAAGGAATTTTTCTCAAAAAAAAGTCGAATTTTAAAGGTATAAAATAATCAGTTTTCTAGCGAAAAAAAAAGCAAAAAATCATCATAAGGAAGTGGTAAAAATTTCGAAATTTGACAAAAAAAAATAGGAAAAAATTCAAAAACTTTATTAGCAAAAATCAGCATATTAAGGTCGAAAAATAGGGGAAAAGTCAGATTTATCGATAATTTTAGTGTTCGACATCCGGTTYATCAGCGAAATTTGCCATTTTTATCGATTGTGAAATCAATATTAAAGCGAGAAAATGAGTCATACGCTTTTCGGTTTTTTCCTCGCTTGGCGCCTCTCGCGATCCTTGGTGAAAACGGAAAGTGCGTCAGTGGCGATGGCTGGCGCGCTTTGTAATATTCCGGCGGGAAGGTGACAAATTAGTGGGTCTTGCTGATAAGGGGCTTTGTTTTGGATTTTAAATTTTAAAGAAAATTAAAGAAGGGAAACTGAGGAGTATTTTAAGCTATCGAGCTAAAAGATTGATAAAGGAAGAAGAGAGTTACAGAGCTTAGAAGTTGGAGTATTTTTTATTTACCGTATTTCTAAAAGCCTCCATGTTCCAGAAAAATTGTAGGGGTGAAGTAGATCAGAAAATACACATTACTTAGGTTTTCCAGTCATTTTCTCTTTGTTTTTTCCATGTCAAAGTTCACGAAAAAGAATTTCAGATGTCTGAAAATGTGTTTCAGATTTTTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCATCATAAGGAAGTGGT</pcr_primer_p1>
		<pcr_primer_p2>AAAGCGTATGACTCATTTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCATCATAAGGAAGTGGTAAAAATTTCGAAATTTGACAAAAAAAAATAGGAAAAAATTCAAAAACTTTATTAGCAAAAATCAGCATATTAAGGTCGAAAAATAGGGGAAAAGTCAGATTTATCGATAATTTTAGTGTTCGACATCCGGTTTATCAGCGAAATTTGCCATTTTTATCGATTGTGAAATCAATATTAAAGCGAGAAAATGAGTCATACGCTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCATCATAAGGAAGTGGTAAAAATTTCGAAATTTGACAAAAAAAAATAGGAAAAAATTCAAAAACTTTATTAGCAAAAATCAGCATATTAAGGTCGAAAAATAGGGGAAAAGTCAGATTTATCGATAATTTTAGTGTTCGACATCCGGTTYATCAGCGAAATTTGCCATTTTTATCGATTGTGAAATCAATATTAAAGCGAGAAAATGAGTCATACGCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17129</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>1000420</contig_pos>
        <strand>+</strand>
        <context>TGAAATCAAT[A/T]TTAAAGCGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATCCGGTTTATCAGCGAAATTTGCCATTTTTATCGATTGTGAAATCAAT</left_flank>
        <right_flank>TTAAAGCGAGAAAATGAGTCATACGCTTTTCGGTTTTTTCCTCGCTTGGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCGAGTTTTTCATCGATTTCTCACAGAAAAATCCGTTTTTAATGCTAACAAACCTGTAGAGCAGTGTTCGACATTTCAAGTCGATTGGAGAGCGAAGATGGGCGACGCTGAAGAAAAAGAGGTTAAAAATCGATGGAAAACTAGTTTAGAAGCTGAAAAACGCATACAGAATGAGTGTAGATTGGGTGTAACAATAGCGGTGAAAATCAAGGTCAAATTTTTCAAAAAAAGGAATTTTTCTCAAAAAAAAGTCGAATTTTAAAGGTATAAAATAATCAGTTTTCTAGCGAAAAAAAAAGCAAAAAATCATCATAAGGAAGTGGTAAAAATTTCGAAATTTGACAAAAAAAAATAGGAAAAAATTCAAAAACTTTATTAGCAAAAATCAGCATATTAAGGTCGAAAAATAGGGGAAAAGTCAGATTTATCGATAATTTTAGTGTTCGACATCCGGTTTATCAGCGAAATTTGCCATTTTTATCGATTGTGAAATCAATATTAAAGCGAGAAAATGAGTCATACGCTTTTCGGTTTTTTCCTCGCTTGGCGCCTCTCGCGATCCTTGGTGAAAACGGAAAGTGCGTCAGTGGCGATGGCTGGCGCGCTTTGTAATATTCCGGCGGGAAGGTGACAAATTAGTGGGTCTTGCTGATAAGGGGCTTTGTTTTGGATTTTAAATTTTAAAGAAAATTAAAGAAGGGAAACTGAGGAGTATTTTAAGCTATCGAGCTAAAAGATTGATAAAGGAAGAAGAGAGTTACAGAGCTTAGAAGTTGGAGTATTTTTTATTTACCGTATTTCTAAAAGCCTCCATGTTCCAGAAAAATTGTAGGGGTGAAGTAGATCAGAAAATACACATTACTTAGGTTTTCCAGTCATTTTCTCTTTGTTTTTTCCATGTCAAAGTTCACGAAAAAGAATTTCAGATGTCTGAAAATGTGTTTCAGATTTTTGAAAATCGAAATACTTTGAAATTTGGAAAGTATACGGTATAATAA</canonical>
            <polymorphic>AATCGAGTTTTTCATCGATTTCTCACAGAAAAATCCGTTTTTAATGCTAACAAACCTGTAGAGCAGTGTTCGACATTTCAAGTCGATTGGAGAGCGAAGATGGGCGACGCTGAAGAAAAAGAGGTTAAAAATCGATGGAAAACTAGTTTAGAAGCTGAAAAACGCATACAGAATGAGTGTAGATTGGGTGTAACAATAGCGGTGAAAATCAAGGTCAAATTTTTCAAAAAAAGGAATTTTTCTCAAAAAAAAGTCGAATTTTAAAGGTATAAAATAATCAGTTTTCTAGCGAAAAAAAAAGCAAAAAATCATCATAAGGAAGTGGTAAAAATTTCGAAATTTGACAAAAAAAAATAGGAAAAAATTCAAAAACTTTATTAGCAAAAATCAGCATATTAAGGTCGAAAAATAGGGGAAAAGTCAGATTTATCGATAATTTTAGTGTTCGACATCCGGTTTATCAGCGAAATTTGCCATTTTTATCGATTGTGAAATCAATWTTAAAGCGAGAAAATGAGTCATACGCTTTTCGGTTTTTTCCTCGCTTGGCGCCTCTCGCGATCCTTGGTGAAAACGGAAAGTGCGTCAGTGGCGATGGCTGGCGCGCTTTGTAATATTCCGGCGGGAAGGTGACAAATTAGTGGGTCTTGCTGATAAGGGGCTTTGTTTTGGATTTTAAATTTTAAAGAAAATTAAAGAAGGGAAACTGAGGAGTATTTTAAGCTATCGAGCTAAAAGATTGATAAAGGAAGAAGAGAGTTACAGAGCTTAGAAGTTGGAGTATTTTTTATTTACCGTATTTCTAAAAGCCTCCATGTTCCAGAAAAATTGTAGGGGTGAAGTAGATCAGAAAATACACATTACTTAGGTTTTCCAGTCATTTTCTCTTTGTTTTTTCCATGTCAAAGTTCACGAAAAAGAATTTCAGATGTCTGAAAATGTGTTTCAGATTTTTGAAAATCGAAATACTTTGAAATTTGGAAAGTATACGGTATAATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 385 116</canonical_bands>
                <polymorphic_bands>615 385</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAGCATATTAAGGTCGAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAAGACCCACTAATTTGTCAC</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>ATCAGCATATTAAGGTCGAAAAATAGGGGAAAAGTCAGATTTATCGATAATTTTAGTGTTCGACATCCGGTTTATCAGCGAAATTTGCCATTTTTATCGATTGTGAAATCAATATTAAAGCGAGAAAATGAGTCATACGCTTTTCGGTTTTTTCCTCGCTTGGCGCCTCTCGCGATCCTTGGTGAAAACGGAAAGTGCGTCAGTGGCGATGGCTGGCGCGCTTTGTAATATTCCGGCGGGAAGGTGACAAATTAGTGGGTCTTG</canonical_amplicon>
		<polymorphic_amplicon>ATCAGCATATTAAGGTCGAAAAATAGGGGAAAAGTCAGATTTATCGATAATTTTAGTGTTCGACATCCGGTTTATCAGCGAAATTTGCCATTTTTATCGATTGTGAAATCAATWTTAAAGCGAGAAAATGAGTCATACGCTTTTCGGTTTTTTCCTCGCTTGGCGCCTCTCGCGATCCTTGGTGAAAACGGAAAGTGCGTCAGTGGCGATGGCTGGCGCGCTTTGTAATATTCCGGCGGGAAGGTGACAAATTAGTGGGTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17130</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>1000475</contig_pos>
        <strand>+</strand>
        <context>CTTGGCGCCT[C/T]TCGCGATYCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCGAGAAAATGAGTCATACGCTTTTCGGTTTTTTCCTCGCTTGGCGCCT</left_flank>
        <right_flank>TCGCGATCCTTGGTGAAAACGGAAAGTGCGTCAGTGGCGATGGCTGGCGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTAGAGCAGTGTTCGACATTTCAAGTCGATTGGAGAGCGAAGATGGGCGACGCTGAAGAAAAAGAGGTTAAAAATCGATGGAAAACTAGTTTAGAAGCTGAAAAACGCATACAGAATGAGTGTAGATTGGGTGTAACAATAGCGGTGAAAATCAAGGTCAAATTTTTCAAAAAAAGGAATTTTTCTCAAAAAAAAGTCGAATTTTAAAGGTATAAAATAATCAGTTTTCTAGCGAAAAAAAAAGCAAAAAATCATCATAAGGAAGTGGTAAAAATTTCGAAATTTGACAAAAAAAAATAGGAAAAAATTCAAAAACTTTATTAGCAAAAATCAGCATATTAAGGTCGAAAAATAGGGGAAAAGTCAGATTTATCGATAATTTTAGTGTTCGACATCCGGTTTATCAGCGAAATTTGCCATTTTTATCGATTGTGAAATCAATATTAAAGCGAGAAAATGAGTCATACGCTTTTCGGTTTTTTCCTCGCTTGGCGCCTCTCGCGATCCTTGGTGAAAACGGAAAGTGCGTCAGTGGCGATGGCTGGCGCGCTTTGTAATATTCCGGCGGGAAGGTGACAAATTAGTGGGTCTTGCTGATAAGGGGCTTTGTTTTGGATTTTAAATTTTAAAGAAAATTAAAGAAGGGAAACTGAGGAGTATTTTAAGCTATCGAGCTAAAAGATTGATAAAGGAAGAAGAGAGTTACAGAGCTTAGAAGTTGGAGTATTTTTTATTTACCGTATTTCTAAAAGCCTCCATGTTCCAGAAAAATTGTAGGGGTGAAGTAGATCAGAAAATACACATTACTTAGGTTTTCCAGTCATTTTCTCTTTGTTTTTTCCATGTCAAAGTTCACGAAAAAGAATTTCAGATGTCTGAAAATGTGTTTCAGATTTTTGAAAATCGAAATACTTTGAAATTTGGAAAGTATACGGTATAATAAATACCAAACAAAAATGGAGATCTGGGTCTAAAGTTGTCAAATATTCTAGAAAATT</canonical>
            <polymorphic>CTGTAGAGCAGTGTTCGACATTTCAAGTCGATTGGAGAGCGAAGATGGGCGACGCTGAAGAAAAAGAGGTTAAAAATCGATGGAAAACTAGTTTAGAAGCTGAAAAACGCATACAGAATGAGTGTAGATTGGGTGTAACAATAGCGGTGAAAATCAAGGTCAAATTTTTCAAAAAAAGGAATTTTTCTCAAAAAAAAGTCGAATTTTAAAGGTATAAAATAATCAGTTTTCTAGCGAAAAAAAAAGCAAAAAATCATCATAAGGAAGTGGTAAAAATTTCGAAATTTGACAAAAAAAAATAGGAAAAAATTCAAAAACTTTATTAGCAAAAATCAGCATATTAAGGTCGAAAAATAGGGGAAAAGTCAGATTTATCGATAATTTTAGTGTTCGACATCCGGTTTATCAGCGAAATTTGCCATTTTTATCGATTGTGAAATCAATATTAAAGCGAGAAAATGAGTCATACGCTTTTCGGTTTTTTCCTCGCTTGGCGCCTYTCGCGATCCTTGGTGAAAACGGAAAGTGCGTCAGTGGCGATGGCTGGCGCGCTTTGTAATATTCCGGCGGGAAGGTGACAAATTAGTGGGTCTTGCTGATAAGGGGCTTTGTTTTGGATTTTAAATTTTAAAGAAAATTAAAGAAGGGAAACTGAGGAGTATTTTAAGCTATCGAGCTAAAAGATTGATAAAGGAAGAAGAGAGTTACAGAGCTTAGAAGTTGGAGTATTTTTTATTTACCGTATTTCTAAAAGCCTCCATGTTCCAGAAAAATTGTAGGGGTGAAGTAGATCAGAAAATACACATTACTTAGGTTTTCCAGTCATTTTCTCTTTGTTTTTTCCATGTCAAAGTTCACGAAAAAGAATTTCAGATGTCTGAAAATGTGTTTCAGATTTTTGAAAATCGAAATACTTTGAAATTTGGAAAGTATACGGTATAATAAATACCAAACAAAAATGGAGATCTGGGTCTAAAGTTGTCAAATATTCTAGAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGCGAGAAAATGAGTCATAC</pcr_primer_p1>
		<pcr_primer_p2>TATCAATCTTTTAGCTCGATAGC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAAGCGAGAAAATGAGTCATACGCTTTTCGGTTTTTTCCTCGCTTGGCGCCTCTCGCGATCCTTGGTGAAAACGGAAAGTGCGTCAGTGGCGATGGCTGGCGCGCTTTGTAATATTCCGGCGGGAAGGTGACAAATTAGTGGGTCTTGCTGATAAGGGGCTTTGTTTTGGATTTTAAATTTTAAAGAAAATTAAAGAAGGGAAACTGAGGAGTATTTTAAGCTATCGAGCTAAAAGATTGATA</canonical_amplicon>
		<polymorphic_amplicon>AAAGCGAGAAAATGAGTCATACGCTTTTCGGTTTTTTCCTCGCTTGGCGCCTYTCGCGATCCTTGGTGAAAACGGAAAGTGCGTCAGTGGCGATGGCTGGCGCGCTTTGTAATATTCCGGCGGGAAGGTGACAAATTAGTGGGTCTTGCTGATAAGGGGCTTTGTTTTGGATTTTAAATTTTAAAGAAAATTAAAGAAGGGAAACTGAGGAGTATTTTAAGCTATCGAGCTAAAAGATTGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17131</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>1000483</contig_pos>
        <strand>+</strand>
        <context>CTYTCGCGAT[C/T]CTTGGTGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGAGTCATACGCTTTTCGGTTTTTTCCTCGCTTGGCGCCTCTCGCGAT</left_flank>
        <right_flank>CTTGGTGAAAACGGAAAGTGCGTCAGTGGCGATGGCTGGCGCGCTTTGTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTGTTCGACATTTCAAGTCGATTGGAGAGCGAAGATGGGCGACGCTGAAGAAAAAGAGGTTAAAAATCGATGGAAAACTAGTTTAGAAGCTGAAAAACGCATACAGAATGAGTGTAGATTGGGTGTAACAATAGCGGTGAAAATCAAGGTCAAATTTTTCAAAAAAAGGAATTTTTCTCAAAAAAAAGTCGAATTTTAAAGGTATAAAATAATCAGTTTTCTAGCGAAAAAAAAAGCAAAAAATCATCATAAGGAAGTGGTAAAAATTTCGAAATTTGACAAAAAAAAATAGGAAAAAATTCAAAAACTTTATTAGCAAAAATCAGCATATTAAGGTCGAAAAATAGGGGAAAAGTCAGATTTATCGATAATTTTAGTGTTCGACATCCGGTTTATCAGCGAAATTTGCCATTTTTATCGATTGTGAAATCAATATTAAAGCGAGAAAATGAGTCATACGCTTTTCGGTTTTTTCCTCGCTTGGCGCCTCTCGCGATCCTTGGTGAAAACGGAAAGTGCGTCAGTGGCGATGGCTGGCGCGCTTTGTAATATTCCGGCGGGAAGGTGACAAATTAGTGGGTCTTGCTGATAAGGGGCTTTGTTTTGGATTTTAAATTTTAAAGAAAATTAAAGAAGGGAAACTGAGGAGTATTTTAAGCTATCGAGCTAAAAGATTGATAAAGGAAGAAGAGAGTTACAGAGCTTAGAAGTTGGAGTATTTTTTATTTACCGTATTTCTAAAAGCCTCCATGTTCCAGAAAAATTGTAGGGGTGAAGTAGATCAGAAAATACACATTACTTAGGTTTTCCAGTCATTTTCTCTTTGTTTTTTCCATGTCAAAGTTCACGAAAAAGAATTTCAGATGTCTGAAAATGTGTTTCAGATTTTTGAAAATCGAAATACTTTGAAATTTGGAAAGTATACGGTATAATAAATACCAAACAAAAATGGAGATCTGGGTCTAAAGTTGTCAAATATTCTAGAAAATTTGAGCTAG</canonical>
            <polymorphic>CAGTGTTCGACATTTCAAGTCGATTGGAGAGCGAAGATGGGCGACGCTGAAGAAAAAGAGGTTAAAAATCGATGGAAAACTAGTTTAGAAGCTGAAAAACGCATACAGAATGAGTGTAGATTGGGTGTAACAATAGCGGTGAAAATCAAGGTCAAATTTTTCAAAAAAAGGAATTTTTCTCAAAAAAAAGTCGAATTTTAAAGGTATAAAATAATCAGTTTTCTAGCGAAAAAAAAAGCAAAAAATCATCATAAGGAAGTGGTAAAAATTTCGAAATTTGACAAAAAAAAATAGGAAAAAATTCAAAAACTTTATTAGCAAAAATCAGCATATTAAGGTCGAAAAATAGGGGAAAAGTCAGATTTATCGATAATTTTAGTGTTCGACATCCGGTTTATCAGCGAAATTTGCCATTTTTATCGATTGTGAAATCAATATTAAAGCGAGAAAATGAGTCATACGCTTTTCGGTTTTTTCCTCGCTTGGCGCCTCTCGCGATYCTTGGTGAAAACGGAAAGTGCGTCAGTGGCGATGGCTGGCGCGCTTTGTAATATTCCGGCGGGAAGGTGACAAATTAGTGGGTCTTGCTGATAAGGGGCTTTGTTTTGGATTTTAAATTTTAAAGAAAATTAAAGAAGGGAAACTGAGGAGTATTTTAAGCTATCGAGCTAAAAGATTGATAAAGGAAGAAGAGAGTTACAGAGCTTAGAAGTTGGAGTATTTTTTATTTACCGTATTTCTAAAAGCCTCCATGTTCCAGAAAAATTGTAGGGGTGAAGTAGATCAGAAAATACACATTACTTAGGTTTTCCAGTCATTTTCTCTTTGTTTTTTCCATGTCAAAGTTCACGAAAAAGAATTTCAGATGTCTGAAAATGTGTTTCAGATTTTTGAAAATCGAAATACTTTGAAATTTGGAAAGTATACGGTATAATAAATACCAAACAAAAATGGAGATCTGGGTCTAAAGTTGTCAAATATTCTAGAAAATTTGAGCTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>496 285 174 45</canonical_bands>
                <polymorphic_bands>781 174 45</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGCGAGAAAATGAGTCATAC</pcr_primer_p1>
		<pcr_primer_p2>TATCAATCTTTTAGCTCGATAGC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAAGCGAGAAAATGAGTCATACGCTTTTCGGTTTTTTCCTCGCTTGGCGCCTCTCGCGATCCTTGGTGAAAACGGAAAGTGCGTCAGTGGCGATGGCTGGCGCGCTTTGTAATATTCCGGCGGGAAGGTGACAAATTAGTGGGTCTTGCTGATAAGGGGCTTTGTTTTGGATTTTAAATTTTAAAGAAAATTAAAGAAGGGAAACTGAGGAGTATTTTAAGCTATCGAGCTAAAAGATTGATA</canonical_amplicon>
		<polymorphic_amplicon>AAAGCGAGAAAATGAGTCATACGCTTTTCGGTTTTTTCCTCGCTTGGCGCCTCTCGCGATYCTTGGTGAAAACGGAAAGTGCGTCAGTGGCGATGGCTGGCGCGCTTTGTAATATTCCGGCGGGAAGGTGACAAATTAGTGGGTCTTGCTGATAAGGGGCTTTGTTTTGGATTTTAAATTTTAAAGAAAATTAAAGAAGGGAAACTGAGGAGTATTTTAAGCTATCGAGCTAAAAGATTGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17132</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>1000498</contig_pos>
        <strand>+</strand>
        <context>GTGAAAACGG[A/G]AAGTGCGTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCGGTTTTTTCCTCGCTTGGCGCCTCTCGCGATCCTTGGTGAAAACGG</left_flank>
        <right_flank>AAGTGCGTCAGTGGCGATGGCTGGCGCGCTTTGTAATATTCCGGCGGGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGTCGATTGGAGAGCGAAGATGGGCGACGCTGAAGAAAAAGAGGTTAAAAATCGATGGAAAACTAGTTTAGAAGCTGAAAAACGCATACAGAATGAGTGTAGATTGGGTGTAACAATAGCGGTGAAAATCAAGGTCAAATTTTTCAAAAAAAGGAATTTTTCTCAAAAAAAAGTCGAATTTTAAAGGTATAAAATAATCAGTTTTCTAGCGAAAAAAAAAGCAAAAAATCATCATAAGGAAGTGGTAAAAATTTCGAAATTTGACAAAAAAAAATAGGAAAAAATTCAAAAACTTTATTAGCAAAAATCAGCATATTAAGGTCGAAAAATAGGGGAAAAGTCAGATTTATCGATAATTTTAGTGTTCGACATCCGGTTTATCAGCGAAATTTGCCATTTTTATCGATTGTGAAATCAATATTAAAGCGAGAAAATGAGTCATACGCTTTTCGGTTTTTTCCTCGCTTGGCGCCTCTCGCGATCCTTGGTGAAAACGGAAAGTGCGTCAGTGGCGATGGCTGGCGCGCTTTGTAATATTCCGGCGGGAAGGTGACAAATTAGTGGGTCTTGCTGATAAGGGGCTTTGTTTTGGATTTTAAATTTTAAAGAAAATTAAAGAAGGGAAACTGAGGAGTATTTTAAGCTATCGAGCTAAAAGATTGATAAAGGAAGAAGAGAGTTACAGAGCTTAGAAGTTGGAGTATTTTTTATTTACCGTATTTCTAAAAGCCTCCATGTTCCAGAAAAATTGTAGGGGTGAAGTAGATCAGAAAATACACATTACTTAGGTTTTCCAGTCATTTTCTCTTTGTTTTTTCCATGTCAAAGTTCACGAAAAAGAATTTCAGATGTCTGAAAATGTGTTTCAGATTTTTGAAAATCGAAATACTTTGAAATTTGGAAAGTATACGGTATAATAAATACCAAACAAAAATGGAGATCTGGGTCTAAAGTTGTCAAATATTCTAGAAAATTTGAGCTAGATGATCTATGTCGTT</canonical>
            <polymorphic>CAAGTCGATTGGAGAGCGAAGATGGGCGACGCTGAAGAAAAAGAGGTTAAAAATCGATGGAAAACTAGTTTAGAAGCTGAAAAACGCATACAGAATGAGTGTAGATTGGGTGTAACAATAGCGGTGAAAATCAAGGTCAAATTTTTCAAAAAAAGGAATTTTTCTCAAAAAAAAGTCGAATTTTAAAGGTATAAAATAATCAGTTTTCTAGCGAAAAAAAAAGCAAAAAATCATCATAAGGAAGTGGTAAAAATTTCGAAATTTGACAAAAAAAAATAGGAAAAAATTCAAAAACTTTATTAGCAAAAATCAGCATATTAAGGTCGAAAAATAGGGGAAAAGTCAGATTTATCGATAATTTTAGTGTTCGACATCCGGTTTATCAGCGAAATTTGCCATTTTTATCGATTGTGAAATCAATATTAAAGCGAGAAAATGAGTCATACGCTTTTCGGTTTTTTCCTCGCTTGGCGCCTCTCGCGATCCTTGGTGAAAACGGRAAGTGCGTCAGTGGCGATGGCTGGCGCGCTTTGTAATATTCCGGCGGGAAGGTGACAAATTAGTGGGTCTTGCTGATAAGGGGCTTTGTTTTGGATTTTAAATTTTAAAGAAAATTAAAGAAGGGAAACTGAGGAGTATTTTAAGCTATCGAGCTAAAAGATTGATAAAGGAAGAAGAGAGTTACAGAGCTTAGAAGTTGGAGTATTTTTTATTTACCGTATTTCTAAAAGCCTCCATGTTCCAGAAAAATTGTAGGGGTGAAGTAGATCAGAAAATACACATTACTTAGGTTTTCCAGTCATTTTCTCTTTGTTTTTTCCATGTCAAAGTTCACGAAAAAGAATTTCAGATGTCTGAAAATGTGTTTCAGATTTTTGAAAATCGAAATACTTTGAAATTTGGAAAGTATACGGTATAATAAATACCAAACAAAAATGGAGATCTGGGTCTAAAGTTGTCAAATATTCTAGAAAATTTGAGCTAGATGATCTATGTCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGCGAGAAAATGAGTCATAC</pcr_primer_p1>
		<pcr_primer_p2>TATCAATCTTTTAGCTCGATAGC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAAGCGAGAAAATGAGTCATACGCTTTTCGGTTTTTTCCTCGCTTGGCGCCTCTCGCGATCCTTGGTGAAAACGGAAAGTGCGTCAGTGGCGATGGCTGGCGCGCTTTGTAATATTCCGGCGGGAAGGTGACAAATTAGTGGGTCTTGCTGATAAGGGGCTTTGTTTTGGATTTTAAATTTTAAAGAAAATTAAAGAAGGGAAACTGAGGAGTATTTTAAGCTATCGAGCTAAAAGATTGATA</canonical_amplicon>
		<polymorphic_amplicon>AAAGCGAGAAAATGAGTCATACGCTTTTCGGTTTTTTCCTCGCTTGGCGCCTCTCGCGATCCTTGGTGAAAACGGRAAGTGCGTCAGTGGCGATGGCTGGCGCGCTTTGTAATATTCCGGCGGGAAGGTGACAAATTAGTGGGTCTTGCTGATAAGGGGCTTTGTTTTGGATTTTAAATTTTAAAGAAAATTAAAGAAGGGAAACTGAGGAGTATTTTAAGCTATCGAGCTAAAAGATTGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17133</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>1003385</contig_pos>
        <strand></strand>
        <context>GGATGAATCT[C/T]TAAAAAATAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAACAAATACAATAAATGAAAAGCTGCAAAACTTGAAGCGGATGAATCT</left_flank>
        <right_flank>TAAAAAATAGACACCTTAGAAAATTGGAATGCCATATTCTGTATGCATCT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAACTGCTAAATGATCAGATTGTCGGTTTGTTCGTGAATTTCAGTAATCTCGAATTCCAAGTTTCCAGAATTCCTCTTGGAACCTGAACTCTTTAGCTTGATTTTTAAATGAGAATTCTCTAATAAAATTGAAACTACCGTACTCTATCTTTGTTGGCTGGACTGGCTATCTTGTTTCTAGGCACTACCTTATCTATTAATTTTAGTAGTCACAGTTGAAACTTTCATTTGTTTTATTCTCCTTGATTACAGGTTCTAGTTAATTACAAATTTTAGAAATTATTAGACCCCACAGTGGTCTATCTTATTTCCAGGAAATCTGCCGTCCCAGGAAGTCCTACTGCCTTGATTTTAATGACAGAATCATAGTTCCAGACAAGAACGCATATGAATTTAATTTTAGAAATTTCAGGAGTTCAGTGGACCCAGGATGTTTAATAGAAAAGCTCAAACAAATACAATAAATGAAAAGCTGCAAAACTTGAAGCGGATGAATCTCTAAAAAATAGACACCTTAGAAAATTGGAATGCCATATTCTGTATGCATCTTTACTGAACTACCGTAACCACTCTAACAGAACGCCCCGAGTCATCAACTTTAAGCCCATGTAGCTCATTTTCTGTGAAAGATATCAGAAAGTGGTCAACTAACAAAATCTTCCTTATATATAAAACGCTAGACGCGTCCACAGGTAAAGGCGGACTGCCGAAAAACTGCTAAATGACAGCTGAAGAGGCGAAAACTGGCGAATGACTGCTATTTGGCAGCCGAAGGAGAACTGACGGGCCGTCGACGGTCCGTCGACGGACAGTCGGTACCGATTGGAAAACGTACTTGAAGGTTCTGATTGGAAATCATGCAGAAAACAATTTCTCATACTCCCACTAGATTATAGAATGTTGATAGAATCTTATTTTCCTCAAATATGACCACCTCAAAAAATAGGTTGTTGAACGACTGCTAAATGACAGTCGAAAAGGCGCTGACTGGCCAACGAC</canonical>
            <polymorphic>GAAACTGCTAAATGATCAGATTGTCGGTTTGTTCGTGAATTTCAGTAATCTCGAATTCCAAGTTTCCAGAATTCCTCTTGGAACCTGAACTCTTTAGCTTGATTTTTAAATGAGAATTCTCTAATAAAATTGAAACTACCGTACTCTATCTTTGTTGGCTGGACTGGCTATCTTGTTTCTAGGCACTACCTTATCTATTAATTTTAGTAGTCACAGTTGAAACTTTCATTTGTTTTATTCTCCTTGATTACAGGTTCTAGTTAATTACAAATTTTAGAAATTATTAGACCCCACAGTGGTCTATCTTATTTCCAGGAAATCTGCCGTCCCAGGAAGTCCTACTGCCTTGATTTTAATGACAGAATCATAGTTCCAGACAAGAACGCATATGAATTTAATTTTAGAAATTTCAGGAGTTCAGTGGACCCAGGATGTTTAATAGAAAAGCTCAAACAAATACAATAAATGAAAAGCTGCAAAACTTGAAGCGGATGAATCTYTAAAAAATAGACACCTTAGAAAATTGGAATGCCATATTCTGTATGCATCTTTACTGAACTACCGTAACCACTCTAACAGAACGCCCCGAGTCATCAACTTTAAGCCCATGTAGCTCATTTTCTGTGAAAGATATCAGAAAGTGGTCAACTAACAAAATCTTCCTTATATATAAAACGCTAGACGCGTCCACAGGTAAAGGCGGACTGCCGAAAAACTGCTAAATGACAGCTGAAGAGGCGAAAACTGGCGAATGACTGCTATTTGGCAGCCGAAGGAGAACTGACGGGCCGTCGACGGTCCGTCGACGGACAGTCGGTACCGATTGGAAAACGTACTTGAAGGTTCTGATTGGAAATCATGCAGAAAACAATTTCTCATACTCCCACTAGATTATAGAATGTTGATAGAATCTTATTTTCCTCAAATATGACCACCTCAAAAAATAGGTTGTTGAACGACTGCTAAATGACAGTCGAAAAGGCGCTGACTGGCCAACGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCCTACTGCCTTGATTTTA</pcr_primer_p1>
		<pcr_primer_p2>TCAGTAAAGATGCATACAGAATATG</pcr_primer_p2>
		<pcr_amplicon_size>224</pcr_amplicon_size>
		<canonical_amplicon>AAGTCCTACTGCCTTGATTTTAATGACAGAATCATAGTTCCAGACAAGAACGCATATGAATTTAATTTTAGAAATTTCAGGAGTTCAGTGGACCCAGGATGTTTAATAGAAAAGCTCAAACAAATACAATAAATGAAAAGCTGCAAAACTTGAAGCGGATGAATCTCTAAAAAATAGACACCTTAGAAAATTGGAATGCCATATTCTGTATGCATCTTTACTGA</canonical_amplicon>
		<polymorphic_amplicon>AAGTCCTACTGCCTTGATTTTAATGACAGAATCATAGTTCCAGACAAGAACGCATATGAATTTAATTTTAGAAATTTCAGGAGTTCAGTGGACCCAGGATGTTTAATAGAAAAGCTCAAACAAATACAATAAATGAAAAGCTGCAAAACTTGAAGCGGATGAATCTYTAAAAAATAGACACCTTAGAAAATTGGAATGCCATATTCTGTATGCATCTTTACTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17134</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>1003210</contig_pos>
        <strand></strand>
        <context>GGAARTCTGC[C/A]GTCCCAGGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TAGAAATTATTAGACCCCACAGTGGTCTATCTTATTTCCAGGAAATCTGC</left_flank>
        <right_flank>GTCCCAGGAAGTCCTACTGCCTTGATTTTAATGACAGAATCATAGTTCCA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGTTTCAACTGATAAAATAATTTTGATAGTATGATAAACATTTTATCAGTTGACCGCATTTTGATATCTTCTGTAGGAAATGATATATATTGTCTCAAAGTTGATGGTTTGGGGAGTTACGGTATTTCAGATTTCAGAAAAGGCCACCTTCAGTTTGTGTCTCCTGCAAAGTCGAAACTGCTAAATGATCAGATTGTCGGTTTGTTCGTGAATTTCAGTAATCTCGAATTCCAAGTTTCCAGAATTCCTCTTGGAACCTGAACTCTTTAGCTTGATTTTTAAATGAGAATTCTCTAATAAAATTGAAACTACCGTACTCTATCTTTGTTGGCTGGACTGGCTATCTTGTTTCTAGGCACTACCTTATCTATTAATTTTAGTAGTCACAGTTGAAACTTTCATTTGTTTTATTCTCCTTGATTACAGGTTCTAGTTAATTACAAATTTTAGAAATTATTAGACCCCACAGTGGTCTATCTTATTTCCAGGAAATCTGCCGTCCCAGGAAGTCCTACTGCCTTGATTTTAATGACAGAATCATAGTTCCAGACAAGAACGCATATGAATTTAATTTTAGAAATTTCAGGAGTTCAGTGGACCCAGGATGTTTAATAGAAAAGCTCAAACAAATACAATAAATGAAAAGCTGCAAAACTTGAAGCGGATGAATCTCTAAAAAATAGACACCTTAGAAAATTGGAATGCCATATTCTGTATGCATCTTTACTGAACTACCGTAACCACTCTAACAGAACGCCCCGAGTCATCAACTTTAAGCCCATGTAGCTCATTTTCTGTGAAAGATATCAGAAAGTGGTCAACTAACAAAATCTTCCTTATATATAAAACGCTAGACGCGTCCACAGGTAAAGGCGGACTGCCGAAAAACTGCTAAATGACAGCTGAAGAGGCGAAAACTGGCGAATGACTGCTATTTGGCAGCCGAAGGAGAACTGACGGGCCGTCGACGGTCCGTCGACGGACAGTCGGTACCGATT</canonical>
            <polymorphic>ATTGTTTCAACTGATAAAATAATTTTGATAGTATGATAAACATTTTATCAGTTGACCGCATTTTGATATCTTCTGTAGGAAATGATATATATTGTCTCAAAGTTGATGGTTTGGGGAGTTACGGTATTTCAGATTTCAGAAAAGGCCACCTTCAGTTTGTGTCTCCTGCAAAGTCGAAACTGCTAAATGATCAGATTGTCGGTTTGTTCGTGAATTTCAGTAATCTCGAATTCCAAGTTTCCAGAATTCCTCTTGGAACCTGAACTCTTTAGCTTGATTTTTAAATGAGAATTCTCTAATAAAATTGAAACTACCGTACTCTATCTTTGTTGGCTGGACTGGCTATCTTGTTTCTAGGCACTACCTTATCTATTAATTTTAGTAGTCACAGTTGAAACTTTCATTTGTTTTATTCTCCTTGATTACAGGTTCTAGTTAATTACAAATTTTAGAAATTATTAGACCCCACAGTGGTCTATCTTATTTCCAGGAAATCTGCMGTCCCAGGAAGTCCTACTGCCTTGATTTTAATGACAGAATCATAGTTCCAGACAAGAACGCATATGAATTTAATTTTAGAAATTTCAGGAGTTCAGTGGACCCAGGATGTTTAATAGAAAAGCTCAAACAAATACAATAAATGAAAAGCTGCAAAACTTGAAGCGGATGAATCTCTAAAAAATAGACACCTTAGAAAATTGGAATGCCATATTCTGTATGCATCTTTACTGAACTACCGTAACCACTCTAACAGAACGCCCCGAGTCATCAACTTTAAGCCCATGTAGCTCATTTTCTGTGAAAGATATCAGAAAGTGGTCAACTAACAAAATCTTCCTTATATATAAAACGCTAGACGCGTCCACAGGTAAAGGCGGACTGCCGAAAAACTGCTAAATGACAGCTGAAGAGGCGAAAACTGGCGAATGACTGCTATTTGGCAGCCGAAGGAGAACTGACGGGCCGTCGACGGTCCGTCGACGGACAGTCGGTACCGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTGTTTTATTCTCCTTGATT</pcr_primer_p1>
		<pcr_primer_p2>GCAGCTTTTCATTTATTGTATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CATTTGTTTTATTCTCCTTGATTACAGGTTCTAGTTAATTACAAATTTTAGAAATTATTAGACCCCACAGTGGTCTATCTTATTTCCAGGAAATCTGCCGTCCCAGGAAGTCCTACTGCCTTGATTTTAATGACAGAATCATAGTTCCAGACAAGAACGCATATGAATTTAATTTTAGAAATTTCAGGAGTTCAGTGGACCCAGGATGTTTAATAGAAAAGCTCAAACAAATACAATAAATGAAAAGCTGC</canonical_amplicon>
		<polymorphic_amplicon>CATTTGTTTTATTCTCCTTGATTACAGGTTCTAGTTAATTACAAATTTTAGAAATTATTAGACCCCACAGTGGTCTATCTTATTTCCAGGAAATCTGCMGTCCCAGGAAGTCCTACTGCCTTGATTTTAATGACAGAATCATAGTTCCAGACAAGAACGCATATGAATTTAATTTTAGAAATTTCAGGAGTTCAGTGGACCCAGGATGTTTAATAGAAAAGCTCAAACAAATACAATAAATGAAAAGCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17135</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>1003204</contig_pos>
        <strand></strand>
        <context>TTTCCAGGAA[A/G]TCTGCMGTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTTTAGAAATTATTAGACCCCACAGTGGTCTATCTTATTTCCAGGAA</left_flank>
        <right_flank>TCTGCCGTCCCAGGAAGTCCTACTGCCTTGATTTTAATGACAGAATCATA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTAAATTGTTTCAACTGATAAAATAATTTTGATAGTATGATAAACATTTTATCAGTTGACCGCATTTTGATATCTTCTGTAGGAAATGATATATATTGTCTCAAAGTTGATGGTTTGGGGAGTTACGGTATTTCAGATTTCAGAAAAGGCCACCTTCAGTTTGTGTCTCCTGCAAAGTCGAAACTGCTAAATGATCAGATTGTCGGTTTGTTCGTGAATTTCAGTAATCTCGAATTCCAAGTTTCCAGAATTCCTCTTGGAACCTGAACTCTTTAGCTTGATTTTTAAATGAGAATTCTCTAATAAAATTGAAACTACCGTACTCTATCTTTGTTGGCTGGACTGGCTATCTTGTTTCTAGGCACTACCTTATCTATTAATTTTAGTAGTCACAGTTGAAACTTTCATTTGTTTTATTCTCCTTGATTACAGGTTCTAGTTAATTACAAATTTTAGAAATTATTAGACCCCACAGTGGTCTATCTTATTTCCAGGAAATCTGCCGTCCCAGGAAGTCCTACTGCCTTGATTTTAATGACAGAATCATAGTTCCAGACAAGAACGCATATGAATTTAATTTTAGAAATTTCAGGAGTTCAGTGGACCCAGGATGTTTAATAGAAAAGCTCAAACAAATACAATAAATGAAAAGCTGCAAAACTTGAAGCGGATGAATCTCTAAAAAATAGACACCTTAGAAAATTGGAATGCCATATTCTGTATGCATCTTTACTGAACTACCGTAACCACTCTAACAGAACGCCCCGAGTCATCAACTTTAAGCCCATGTAGCTCATTTTCTGTGAAAGATATCAGAAAGTGGTCAACTAACAAAATCTTCCTTATATATAAAACGCTAGACGCGTCCACAGGTAAAGGCGGACTGCCGAAAAACTGCTAAATGACAGCTGAAGAGGCGAAAACTGGCGAATGACTGCTATTTGGCAGCCGAAGGAGAACTGACGGGCCGTCGACGGTCCGTCGACGGACAGTCGGTA</canonical>
            <polymorphic>ATCTAAATTGTTTCAACTGATAAAATAATTTTGATAGTATGATAAACATTTTATCAGTTGACCGCATTTTGATATCTTCTGTAGGAAATGATATATATTGTCTCAAAGTTGATGGTTTGGGGAGTTACGGTATTTCAGATTTCAGAAAAGGCCACCTTCAGTTTGTGTCTCCTGCAAAGTCGAAACTGCTAAATGATCAGATTGTCGGTTTGTTCGTGAATTTCAGTAATCTCGAATTCCAAGTTTCCAGAATTCCTCTTGGAACCTGAACTCTTTAGCTTGATTTTTAAATGAGAATTCTCTAATAAAATTGAAACTACCGTACTCTATCTTTGTTGGCTGGACTGGCTATCTTGTTTCTAGGCACTACCTTATCTATTAATTTTAGTAGTCACAGTTGAAACTTTCATTTGTTTTATTCTCCTTGATTACAGGTTCTAGTTAATTACAAATTTTAGAAATTATTAGACCCCACAGTGGTCTATCTTATTTCCAGGAARTCTGCCGTCCCAGGAAGTCCTACTGCCTTGATTTTAATGACAGAATCATAGTTCCAGACAAGAACGCATATGAATTTAATTTTAGAAATTTCAGGAGTTCAGTGGACCCAGGATGTTTAATAGAAAAGCTCAAACAAATACAATAAATGAAAAGCTGCAAAACTTGAAGCGGATGAATCTCTAAAAAATAGACACCTTAGAAAATTGGAATGCCATATTCTGTATGCATCTTTACTGAACTACCGTAACCACTCTAACAGAACGCCCCGAGTCATCAACTTTAAGCCCATGTAGCTCATTTTCTGTGAAAGATATCAGAAAGTGGTCAACTAACAAAATCTTCCTTATATATAAAACGCTAGACGCGTCCACAGGTAAAGGCGGACTGCCGAAAAACTGCTAAATGACAGCTGAAGAGGCGAAAACTGGCGAATGACTGCTATTTGGCAGCCGAAGGAGAACTGACGGGCCGTCGACGGTCCGTCGACGGACAGTCGGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTGTTTTATTCTCCTTGATT</pcr_primer_p1>
		<pcr_primer_p2>GCAGCTTTTCATTTATTGTATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CATTTGTTTTATTCTCCTTGATTACAGGTTCTAGTTAATTACAAATTTTAGAAATTATTAGACCCCACAGTGGTCTATCTTATTTCCAGGAAATCTGCCGTCCCAGGAAGTCCTACTGCCTTGATTTTAATGACAGAATCATAGTTCCAGACAAGAACGCATATGAATTTAATTTTAGAAATTTCAGGAGTTCAGTGGACCCAGGATGTTTAATAGAAAAGCTCAAACAAATACAATAAATGAAAAGCTGC</canonical_amplicon>
		<polymorphic_amplicon>CATTTGTTTTATTCTCCTTGATTACAGGTTCTAGTTAATTACAAATTTTAGAAATTATTAGACCCCACAGTGGTCTATCTTATTTCCAGGAARTCTGCCGTCCCAGGAAGTCCTACTGCCTTGATTTTAATGACAGAATCATAGTTCCAGACAAGAACGCATATGAATTTAATTTTAGAAATTTCAGGAGTTCAGTGGACCCAGGATGTTTAATAGAAAAGCTCAAACAAATACAATAAATGAAAAGCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17136</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>1003053</contig_pos>
        <strand></strand>
        <context>GCTGGACTGR[C/A]TATCTTGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TCTCTAATAAAATTGAAACTACCGTACTCTATCTTTGTTGGCTGGACTGG</left_flank>
        <right_flank>TATCTTGTTTCTAGGCACTACCTTATCTATTAATTTTAGTAGTCACAGTT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCATCTGGGTTACTGTAAGAGATATCAAAAAGTGATCAACTGATAAAATGTTTATCATACTATCAGCGACATTTTATTACTTAACACATTTTGGATGCCTTTCACAGGAATCCAGGAAATTGGCAATTTATCTGGGTTCCTGTGAAAGGTATCTAAATTGTTTCAACTGATAAAATAATTTTGATAGTATGATAAACATTTTATCAGTTGACCGCATTTTGATATCTTCTGTAGGAAATGATATATATTGTCTCAAAGTTGATGGTTTGGGGAGTTACGGTATTTCAGATTTCAGAAAAGGCCACCTTCAGTTTGTGTCTCCTGCAAAGTCGAAACTGCTAAATGATCAGATTGTCGGTTTGTTCGTGAATTTCAGTAATCTCGAATTCCAAGTTTCCAGAATTCCTCTTGGAACCTGAACTCTTTAGCTTGATTTTTAAATGAGAATTCTCTAATAAAATTGAAACTACCGTACTCTATCTTTGTTGGCTGGACTGGCTATCTTGTTTCTAGGCACTACCTTATCTATTAATTTTAGTAGTCACAGTTGAAACTTTCATTTGTTTTATTCTCCTTGATTACAGGTTCTAGTTAATTACAAATTTTAGAAATTATTAGACCCCACAGTGGTCTATCTTATTTCCAGGAAATCTGCCGTCCCAGGAAGTCCTACTGCCTTGATTTTAATGACAGAATCATAGTTCCAGACAAGAACGCATATGAATTTAATTTTAGAAATTTCAGGAGTTCAGTGGACCCAGGATGTTTAATAGAAAAGCTCAAACAAATACAATAAATGAAAAGCTGCAAAACTTGAAGCGGATGAATCTCTAAAAAATAGACACCTTAGAAAATTGGAATGCCATATTCTGTATGCATCTTTACTGAACTACCGTAACCACTCTAACAGAACGCCCCGAGTCATCAACTTTAAGCCCATGTAGCTCATTTTCTGTGAAAGATATCAGAAAGTGGTCAACTAACAAAATCTTCCTTATA</canonical>
            <polymorphic>TTCATCTGGGTTACTGTAAGAGATATCAAAAAGTGATCAACTGATAAAATGTTTATCATACTATCAGCGACATTTTATTACTTAACACATTTTGGATGCCTTTCACAGGAATCCAGGAAATTGGCAATTTATCTGGGTTCCTGTGAAAGGTATCTAAATTGTTTCAACTGATAAAATAATTTTGATAGTATGATAAACATTTTATCAGTTGACCGCATTTTGATATCTTCTGTAGGAAATGATATATATTGTCTCAAAGTTGATGGTTTGGGGAGTTACGGTATTTCAGATTTCAGAAAAGGCCACCTTCAGTTTGTGTCTCCTGCAAAGTCGAAACTGCTAAATGATCAGATTGTCGGTTTGTTCGTGAATTTCAGTAATCTCGAATTCCAAGTTTCCAGAATTCCTCTTGGAACCTGAACTCTTTAGCTTGATTTTTAAATGAGAATTCTCTAATAAAATTGAAACTACCGTACTCTATCTTTGTTGGCTGGACTGGMTATCTTGTTTCTAGGCACTACCTTATCTATTAATTTTAGTAGTCACAGTTGAAACTTTCATTTGTTTTATTCTCCTTGATTACAGGTTCTAGTTAATTACAAATTTTAGAAATTATTAGACCCCACAGTGGTCTATCTTATTTCCAGGAAATCTGCCGTCCCAGGAAGTCCTACTGCCTTGATTTTAATGACAGAATCATAGTTCCAGACAAGAACGCATATGAATTTAATTTTAGAAATTTCAGGAGTTCAGTGGACCCAGGATGTTTAATAGAAAAGCTCAAACAAATACAATAAATGAAAAGCTGCAAAACTTGAAGCGGATGAATCTCTAAAAAATAGACACCTTAGAAAATTGGAATGCCATATTCTGTATGCATCTTTACTGAACTACCGTAACCACTCTAACAGAACGCCCCGAGTCATCAACTTTAAGCCCATGTAGCTCATTTTCTGTGAAAGATATCAGAAAGTGGTCAACTAACAAAATCTTCCTTATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>496 446 58</canonical_bands>
                <polymorphic_bands>942 58</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>302 280 131 127 61 55 26 9 9</canonical_bands>
                <polymorphic_bands>302 289 131 127 61 55 26 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTGCTAAATGATCAGATTGTC</pcr_primer_p1>
		<pcr_primer_p2>TGTAATCAAGGAGAATAAAACAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACTGCTAAATGATCAGATTGTCGGTTTGTTCGTGAATTTCAGTAATCTCGAATTCCAAGTTTCCAGAATTCCTCTTGGAACCTGAACTCTTTAGCTTGATTTTTAAATGAGAATTCTCTAATAAAATTGAAACTACCGTACTCTATCTTTGTTGGCTGGACTGGCTATCTTGTTTCTAGGCACTACCTTATCTATTAATTTTAGTAGTCACAGTTGAAACTTTCATTTGTTTTATTCTCCTTGATTACA</canonical_amplicon>
		<polymorphic_amplicon>AACTGCTAAATGATCAGATTGTCGGTTTGTTCGTGAATTTCAGTAATCTCGAATTCCAAGTTTCCAGAATTCCTCTTGGAACCTGAACTCTTTAGCTTGATTTTTAAATGAGAATTCTCTAATAAAATTGAAACTACCGTACTCTATCTTTGTTGGCTGGACTGGMTATCTTGTTTCTAGGCACTACCTTATCTATTAATTTTAGTAGTCACAGTTGAAACTTTCATTTGTTTTATTCTCCTTGATTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17137</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>1003052</contig_pos>
        <strand></strand>
        <context>GGCTGGACTG[G/A]MTATCTTGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTCTCTAATAAAATTGAAACTACCGTACTCTATCTTTGTTGGCTGGACTG</left_flank>
        <right_flank>CTATCTTGTTTCTAGGCACTACCTTATCTATTAATTTTAGTAGTCACAGT</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCATCTGGGTTACTGTAAGAGATATCAAAAAGTGATCAACTGATAAAATGTTTATCATACTATCAGCGACATTTTATTACTTAACACATTTTGGATGCCTTTCACAGGAATCCAGGAAATTGGCAATTTATCTGGGTTCCTGTGAAAGGTATCTAAATTGTTTCAACTGATAAAATAATTTTGATAGTATGATAAACATTTTATCAGTTGACCGCATTTTGATATCTTCTGTAGGAAATGATATATATTGTCTCAAAGTTGATGGTTTGGGGAGTTACGGTATTTCAGATTTCAGAAAAGGCCACCTTCAGTTTGTGTCTCCTGCAAAGTCGAAACTGCTAAATGATCAGATTGTCGGTTTGTTCGTGAATTTCAGTAATCTCGAATTCCAAGTTTCCAGAATTCCTCTTGGAACCTGAACTCTTTAGCTTGATTTTTAAATGAGAATTCTCTAATAAAATTGAAACTACCGTACTCTATCTTTGTTGGCTGGACTGGCTATCTTGTTTCTAGGCACTACCTTATCTATTAATTTTAGTAGTCACAGTTGAAACTTTCATTTGTTTTATTCTCCTTGATTACAGGTTCTAGTTAATTACAAATTTTAGAAATTATTAGACCCCACAGTGGTCTATCTTATTTCCAGGAAATCTGCCGTCCCAGGAAGTCCTACTGCCTTGATTTTAATGACAGAATCATAGTTCCAGACAAGAACGCATATGAATTTAATTTTAGAAATTTCAGGAGTTCAGTGGACCCAGGATGTTTAATAGAAAAGCTCAAACAAATACAATAAATGAAAAGCTGCAAAACTTGAAGCGGATGAATCTCTAAAAAATAGACACCTTAGAAAATTGGAATGCCATATTCTGTATGCATCTTTACTGAACTACCGTAACCACTCTAACAGAACGCCCCGAGTCATCAACTTTAAGCCCATGTAGCTCATTTTCTGTGAAAGATATCAGAAAGTGGTCAACTAACAAAATCTTCCTTAT</canonical>
            <polymorphic>ATTCATCTGGGTTACTGTAAGAGATATCAAAAAGTGATCAACTGATAAAATGTTTATCATACTATCAGCGACATTTTATTACTTAACACATTTTGGATGCCTTTCACAGGAATCCAGGAAATTGGCAATTTATCTGGGTTCCTGTGAAAGGTATCTAAATTGTTTCAACTGATAAAATAATTTTGATAGTATGATAAACATTTTATCAGTTGACCGCATTTTGATATCTTCTGTAGGAAATGATATATATTGTCTCAAAGTTGATGGTTTGGGGAGTTACGGTATTTCAGATTTCAGAAAAGGCCACCTTCAGTTTGTGTCTCCTGCAAAGTCGAAACTGCTAAATGATCAGATTGTCGGTTTGTTCGTGAATTTCAGTAATCTCGAATTCCAAGTTTCCAGAATTCCTCTTGGAACCTGAACTCTTTAGCTTGATTTTTAAATGAGAATTCTCTAATAAAATTGAAACTACCGTACTCTATCTTTGTTGGCTGGACTGRCTATCTTGTTTCTAGGCACTACCTTATCTATTAATTTTAGTAGTCACAGTTGAAACTTTCATTTGTTTTATTCTCCTTGATTACAGGTTCTAGTTAATTACAAATTTTAGAAATTATTAGACCCCACAGTGGTCTATCTTATTTCCAGGAAATCTGCCGTCCCAGGAAGTCCTACTGCCTTGATTTTAATGACAGAATCATAGTTCCAGACAAGAACGCATATGAATTTAATTTTAGAAATTTCAGGAGTTCAGTGGACCCAGGATGTTTAATAGAAAAGCTCAAACAAATACAATAAATGAAAAGCTGCAAAACTTGAAGCGGATGAATCTCTAAAAAATAGACACCTTAGAAAATTGGAATGCCATATTCTGTATGCATCTTTACTGAACTACCGTAACCACTCTAACAGAACGCCCCGAGTCATCAACTTTAAGCCCATGTAGCTCATTTTCTGTGAAAGATATCAGAAAGTGGTCAACTAACAAAATCTTCCTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>497 446 57</canonical_bands>
                <polymorphic_bands>943 57</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>303 280 131 127 61 54 26 9 9</canonical_bands>
                <polymorphic_bands>303 289 131 127 61 54 26 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTGCTAAATGATCAGATTGTC</pcr_primer_p1>
		<pcr_primer_p2>TGTAATCAAGGAGAATAAAACAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACTGCTAAATGATCAGATTGTCGGTTTGTTCGTGAATTTCAGTAATCTCGAATTCCAAGTTTCCAGAATTCCTCTTGGAACCTGAACTCTTTAGCTTGATTTTTAAATGAGAATTCTCTAATAAAATTGAAACTACCGTACTCTATCTTTGTTGGCTGGACTGGCTATCTTGTTTCTAGGCACTACCTTATCTATTAATTTTAGTAGTCACAGTTGAAACTTTCATTTGTTTTATTCTCCTTGATTACA</canonical_amplicon>
		<polymorphic_amplicon>AACTGCTAAATGATCAGATTGTCGGTTTGTTCGTGAATTTCAGTAATCTCGAATTCCAAGTTTCCAGAATTCCTCTTGGAACCTGAACTCTTTAGCTTGATTTTTAAATGAGAATTCTCTAATAAAATTGAAACTACCGTACTCTATCTTTGTTGGCTGGACTGRCTATCTTGTTTCTAGGCACTACCTTATCTATTAATTTTAGTAGTCACAGTTGAAACTTTCATTTGTTTTATTCTCCTTGATTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17138</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>1011292</contig_pos>
        <strand>+</strand>
        <context>TGTTTCAAAM[A/T]MAAAAATCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAATTAGTTTTTGGAAAAGTGAAGAGAACAGAAAAGTGATTGTTTCAAAA</left_flank>
        <right_flank>AAAAAATCAGAATCATCAGAAAGCTCATAAAATTTCAAATCGTTCTGTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCGTGTGCTTGCTGCCTGTTGATGTGATAAAAATGCTATGTGCCTTCTTCTTCTCTTTCTCTCTCTCTCTCTTCTTTTTCGCCTCTTGATAAACAAATCAAGCCACCGGGAGGACGGAGAAAAAGAGACGTTTTTCGTCTCTAGCTTCTCTCACTCTCTCGTTCTCTGAAAAATGGAGAATCTATTTTTAGAATTGCTCTCCCCCTCCTCTCGGCCCGCCCGGGTGCCGCTTATCGATTTTAAGGCATATAATGCATACAAATGTGCAGGCAGCACATGCTCTCTTTTTCTTTTTTCGGGGCAGGGACCAAAAAGAGAGAGAGAGAGAGGAGGAAGAGGTCCTCCAAGTGCTCCTAAAAGAAGGGAATTGGAAAAGATGTGATTTTCATGGAGAAGAGTGAGGACCACTTGAAAAGAAGACATAGAAAAGATGGGGTTAATTGAATTTCAATTAGTTTTTGGAAAAGTGAAGAGAACAGAAAAGTGATTGTTTCAAAAAAAAAAATCAGAATCATCAGAAAGCTCATAAAATTTCAAATCGTTCTGTAAAAGAACTAAGTTTTTAGGACCACGGAGAGCTGAGATATAGCCCTTTGAAGTTTGCAGCGAAAGAGGGAGACACAGGCGCGCAGACAGTCTGCCTGTCGGCGTCTCCTCCTTCCTCACGCTTCCTCGCGAGCCTAAAACTTCTAACGATTGTAACTCAGCTTCTATAAGTGCTAGAAACTTGATTTTTGTACTACTCAAACTGAAATTTCGTGGGGTTTTTGTGAATACATGTTTGTTACAATTTTGATGACAAAACTATATTACAATAATGGGGAAATTGAGCTCAAACGGGGATTCTATAAGTTGAATCCACCTTTTAAAATCTATATTTTTCAGGTAATGCTAAAAGCAATGGAAGAAATCGACCCGCCAATCGCCCTCGACCAGCCAAGCACCGCTGCCAGCAGAGACTACGTGATGAGCGTCACCAACGATCCAGAAGACAATTAT</canonical>
            <polymorphic>GGCGTGTGCTTGCTGCCTGTTGATGTGATAAAAATGCTATGTGCCTTCTTCTTCTCTTTCTCTCTCTCTCTCTTCTTTTTCGCCTCTTGATAAACAAATCAAGCCACCGGGAGGACGGAGAAAAAGAGACGTTTTTCGTCTCTAGCTTCTCTCACTCTCTCGTTCTCTGAAAAATGGAGAATCTATTTTTAGAATTGCTCTCCCCCTCCTCTCGGCCCGCCCGGGTGCCGCTTATCGATTTTAAGGCATATAATGCATACAAATGTGCAGGCAGCACATGCTCTCTTTTTCTTTTTTCGGGGCAGGGACCAAAAAGAGAGAGAGAGAGAGGAGGAAGAGGTCCTCCAAGTGCTCCTAAAAGAAGGGAATTGGAAAAGATGTGATTTTCATGGAGAAGAGTGAGGACCACTTGAAAAGAAGACATAGAAAAGATGGGGTTAATTGAATTTCAATTAGTTTTTGGAAAAGTGAAGAGAACAGAAAAGTGATTGTTTCAAAAWAAAAAATCAGAATCATCAGAAAGCTCATAAAATTTCAAATCGTTCTGTAAAAGAACTAAGTTTTTAGGACCACGGAGAGCTGAGATATAGCCCTTTGAAGTTTGCAGCGAAAGAGGGAGACACAGGCGCGCAGACAGTCTGCCTGTCGGCGTCTCCTCCTTCCTCACGCTTCCTCGCGAGCCTAAAACTTCTAACGATTGTAACTCAGCTTCTATAAGTGCTAGAAACTTGATTTTTGTACTACTCAAACTGAAATTTCGTGGGGTTTTTGTGAATACATGTTTGTTACAATTTTGATGACAAAACTATATTACAATAATGGGGAAATTGAGCTCAAACGGGGATTCTATAAGTTGAATCCACCTTTTAAAATCTATATTTTTCAGGTAATGCTAAAAGCAATGGAAGAAATCGACCCGCCAATCGCCCTCGACCAGCCAAGCACCGCTGCCAGCAGAGACTACGTGATGAGCGTCACCAACGATCCAGAAGACAATTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAATTAGTTTTTGGAAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>CCACGAAATTTCAGTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>316</pcr_amplicon_size>
		<canonical_amplicon>TTCAATTAGTTTTTGGAAAAGTGAAGAGAACAGAAAAGTGATTGTTTCAAAAAAAAAAATCAGAATCATCAGAAAGCTCATAAAATTTCAAATCGTTCTGTAAAAGAACTAAGTTTTTAGGACCACGGAGAGCTGAGATATAGCCCTTTGAAGTTTGCAGCGAAAGAGGGAGACACAGGCGCGCAGACAGTCTGCCTGTCGGCGTCTCCTCCTTCCTCACGCTTCCTCGCGAGCCTAAAACTTCTAACGATTGTAACTCAGCTTCTATAAGTGCTAGAAACTTGATTTTTGTACTACTCAAACTGAAATTTCGTGG</canonical_amplicon>
		<polymorphic_amplicon>TTCAATTAGTTTTTGGAAAAGTGAAGAGAACAGAAAAGTGATTGTTTCAAAAWAAAAAATCAGAATCATCAGAAAGCTCATAAAATTTCAAATCGTTCTGTAAAAGAACTAAGTTTTTAGGACCACGGAGAGCTGAGATATAGCCCTTTGAAGTTTGCAGCGAAAGAGGGAGACACAGGCGCGCAGACAGTCTGCCTGTCGGCGTCTCCTCCTTCCTCACGCTTCCTCGCGAGCCTAAAACTTCTAACGATTGTAACTCAGCTTCTATAAGTGCTAGAAACTTGATTTTTGTACTACTCAAACTGAAATTTCGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17139</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>1011293</contig_pos>
        <strand>+</strand>
        <context>GTTTCAAAMW[A/C]AAAAATCAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTAGTTTTTGGAAAAGTGAAGAGAACAGAAAAGTGATTGTTTCAAAAA</left_flank>
        <right_flank>AAAAATCAGAATCATCAGAAAGCTCATAAAATTTCAAATCGTTCTGTAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGTGTGCTTGCTGCCTGTTGATGTGATAAAAATGCTATGTGCCTTCTTCTTCTCTTTCTCTCTCTCTCTCTTCTTTTTCGCCTCTTGATAAACAAATCAAGCCACCGGGAGGACGGAGAAAAAGAGACGTTTTTCGTCTCTAGCTTCTCTCACTCTCTCGTTCTCTGAAAAATGGAGAATCTATTTTTAGAATTGCTCTCCCCCTCCTCTCGGCCCGCCCGGGTGCCGCTTATCGATTTTAAGGCATATAATGCATACAAATGTGCAGGCAGCACATGCTCTCTTTTTCTTTTTTCGGGGCAGGGACCAAAAAGAGAGAGAGAGAGAGGAGGAAGAGGTCCTCCAAGTGCTCCTAAAAGAAGGGAATTGGAAAAGATGTGATTTTCATGGAGAAGAGTGAGGACCACTTGAAAAGAAGACATAGAAAAGATGGGGTTAATTGAATTTCAATTAGTTTTTGGAAAAGTGAAGAGAACAGAAAAGTGATTGTTTCAAAAAAAAAAATCAGAATCATCAGAAAGCTCATAAAATTTCAAATCGTTCTGTAAAAGAACTAAGTTTTTAGGACCACGGAGAGCTGAGATATAGCCCTTTGAAGTTTGCAGCGAAAGAGGGAGACACAGGCGCGCAGACAGTCTGCCTGTCGGCGTCTCCTCCTTCCTCACGCTTCCTCGCGAGCCTAAAACTTCTAACGATTGTAACTCAGCTTCTATAAGTGCTAGAAACTTGATTTTTGTACTACTCAAACTGAAATTTCGTGGGGTTTTTGTGAATACATGTTTGTTACAATTTTGATGACAAAACTATATTACAATAATGGGGAAATTGAGCTCAAACGGGGATTCTATAAGTTGAATCCACCTTTTAAAATCTATATTTTTCAGGTAATGCTAAAAGCAATGGAAGAAATCGACCCGCCAATCGCCCTCGACCAGCCAAGCACCGCTGCCAGCAGAGACTACGTGATGAGCGTCACCAACGATCCAGAAGACAATTATC</canonical>
            <polymorphic>GCGTGTGCTTGCTGCCTGTTGATGTGATAAAAATGCTATGTGCCTTCTTCTTCTCTTTCTCTCTCTCTCTCTTCTTTTTCGCCTCTTGATAAACAAATCAAGCCACCGGGAGGACGGAGAAAAAGAGACGTTTTTCGTCTCTAGCTTCTCTCACTCTCTCGTTCTCTGAAAAATGGAGAATCTATTTTTAGAATTGCTCTCCCCCTCCTCTCGGCCCGCCCGGGTGCCGCTTATCGATTTTAAGGCATATAATGCATACAAATGTGCAGGCAGCACATGCTCTCTTTTTCTTTTTTCGGGGCAGGGACCAAAAAGAGAGAGAGAGAGAGGAGGAAGAGGTCCTCCAAGTGCTCCTAAAAGAAGGGAATTGGAAAAGATGTGATTTTCATGGAGAAGAGTGAGGACCACTTGAAAAGAAGACATAGAAAAGATGGGGTTAATTGAATTTCAATTAGTTTTTGGAAAAGTGAAGAGAACAGAAAAGTGATTGTTTCAAAAAMAAAAATCAGAATCATCAGAAAGCTCATAAAATTTCAAATCGTTCTGTAAAAGAACTAAGTTTTTAGGACCACGGAGAGCTGAGATATAGCCCTTTGAAGTTTGCAGCGAAAGAGGGAGACACAGGCGCGCAGACAGTCTGCCTGTCGGCGTCTCCTCCTTCCTCACGCTTCCTCGCGAGCCTAAAACTTCTAACGATTGTAACTCAGCTTCTATAAGTGCTAGAAACTTGATTTTTGTACTACTCAAACTGAAATTTCGTGGGGTTTTTGTGAATACATGTTTGTTACAATTTTGATGACAAAACTATATTACAATAATGGGGAAATTGAGCTCAAACGGGGATTCTATAAGTTGAATCCACCTTTTAAAATCTATATTTTTCAGGTAATGCTAAAAGCAATGGAAGAAATCGACCCGCCAATCGCCCTCGACCAGCCAAGCACCGCTGCCAGCAGAGACTACGTGATGAGCGTCACCAACGATCCAGAAGACAATTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAATTAGTTTTTGGAAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>CCACGAAATTTCAGTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>316</pcr_amplicon_size>
		<canonical_amplicon>TTCAATTAGTTTTTGGAAAAGTGAAGAGAACAGAAAAGTGATTGTTTCAAAAAAAAAAATCAGAATCATCAGAAAGCTCATAAAATTTCAAATCGTTCTGTAAAAGAACTAAGTTTTTAGGACCACGGAGAGCTGAGATATAGCCCTTTGAAGTTTGCAGCGAAAGAGGGAGACACAGGCGCGCAGACAGTCTGCCTGTCGGCGTCTCCTCCTTCCTCACGCTTCCTCGCGAGCCTAAAACTTCTAACGATTGTAACTCAGCTTCTATAAGTGCTAGAAACTTGATTTTTGTACTACTCAAACTGAAATTTCGTGG</canonical_amplicon>
		<polymorphic_amplicon>TTCAATTAGTTTTTGGAAAAGTGAAGAGAACAGAAAAGTGATTGTTTCAAAAAMAAAAATCAGAATCATCAGAAAGCTCATAAAATTTCAAATCGTTCTGTAAAAGAACTAAGTTTTTAGGACCACGGAGAGCTGAGATATAGCCCTTTGAAGTTTGCAGCGAAAGAGGGAGACACAGGCGCGCAGACAGTCTGCCTGTCGGCGTCTCCTCCTTCCTCACGCTTCCTCGCGAGCCTAAAACTTCTAACGATTGTAACTCAGCTTCTATAAGTGCTAGAAACTTGATTTTTGTACTACTCAAACTGAAATTTCGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17141</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>1012732</contig_pos>
        <strand>+</strand>
        <context>CGCTGAAATT[C/T]TTCGAGAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACGGGTCTAGCTAGAATTTTGCGGGCTTTCTTATGACTACGCTGAAATT</left_flank>
        <right_flank>TTCGAGAAATTTGAATTTCAAACTTTCAAATCTCCAAAATTTTTCAGCTT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGACAGAGTGCCTCGTTGTCTGCGTCTCCCCCTTCTCCACGCTCTTTCGTAGAAGCTTGGAAAGCTGATATCTCGGCTCCTAGAGCTCCTAGAAACTTGATTTAAAAACAGGTTTGTAGGGAAAAGCAGTGGCTATTAGATGAAACCGATTGCTAATAACTTTTTCAAATCTTTTTCGACAGTTTTCAAACAAAAACTTATATTCTTTTATATTTTCTGAAAGCCTGAAAAATTTGAATTCATAGTGTCAAAAAACGAGTCTTCTAGCTCACCGGAGAGCCGAAATATGGCTCGCGCAAGTTTGCGGCGAGCGGGAAGGGGAGGAGAGACGCAGGCGCACAGGCTGCCTCCCTGTCGGCGTCTCCTCTTTCCGTACACTCCCTCACGCGCCTAAAACTACAAATGCTTGTAACTCCGCTCCTATTGGGTCTAGAAACTTGGTTTCTTTACGGGTCTAGCTAGAATTTTGCGGGCTTTCTTATGACTACGCTGAAATTTTTCGAGAAATTTGAATTTCAAACTTTCAAATCTCCAAAATTTTTCAGCTTCCTCGACAAAGTCGACATCGTCCGCCAGAACAACTACGATCCATCCGAGCAAGATATCCTTAGATGTCGTGTCATGACCACCGGAATTTTCGAGACCAAATTCGAAGTCGACAAAGTTAGATTCCAGTGAGTCCTGAGAGAGTCCAATAGAGCACATTTACCTTTTTTGAATTCCAGCATGTTCGACGTCGGAGGCCAAAGAGACGAACGACGAAAATGGATTCAGTGCTTCAACGATGTGACGGCTATTATCTTCGTCTGCGCTTCATCGTCCTACAATCTCGTTCTCTGGGAGGATAACACCCAAAATCGGTGAGTTTAAAATCTTTTTCCTTGTTTTCAGTATCCAAAATTTGATATACTGTACTTTATCAGAAAGCTCTTAAAATTTCACAAATTTCTAAAAAAGAACCAAATCTCTAGGACCACTGAGAGCCGAGATATAAGCTT</canonical>
            <polymorphic>ACAGACAGAGTGCCTCGTTGTCTGCGTCTCCCCCTTCTCCACGCTCTTTCGTAGAAGCTTGGAAAGCTGATATCTCGGCTCCTAGAGCTCCTAGAAACTTGATTTAAAAACAGGTTTGTAGGGAAAAGCAGTGGCTATTAGATGAAACCGATTGCTAATAACTTTTTCAAATCTTTTTCGACAGTTTTCAAACAAAAACTTATATTCTTTTATATTTTCTGAAAGCCTGAAAAATTTGAATTCATAGTGTCAAAAAACGAGTCTTCTAGCTCACCGGAGAGCCGAAATATGGCTCGCGCAAGTTTGCGGCGAGCGGGAAGGGGAGGAGAGACGCAGGCGCACAGGCTGCCTCCCTGTCGGCGTCTCCTCTTTCCGTACACTCCCTCACGCGCCTAAAACTACAAATGCTTGTAACTCCGCTCCTATTGGGTCTAGAAACTTGGTTTCTTTACGGGTCTAGCTAGAATTTTGCGGGCTTTCTTATGACTACGCTGAAATTYTTCGAGAAATTTGAATTTCAAACTTTCAAATCTCCAAAATTTTTCAGCTTCCTCGACAAAGTCGACATCGTCCGCCAGAACAACTACGATCCATCCGAGCAAGATATCCTTAGATGTCGTGTCATGACCACCGGAATTTTCGAGACCAAATTCGAAGTCGACAAAGTTAGATTCCAGTGAGTCCTGAGAGAGTCCAATAGAGCACATTTACCTTTTTTGAATTCCAGCATGTTCGACGTCGGAGGCCAAAGAGACGAACGACGAAAATGGATTCAGTGCTTCAACGATGTGACGGCTATTATCTTCGTCTGCGCTTCATCGTCCTACAATCTCGTTCTCTGGGAGGATAACACCCAAAATCGGTGAGTTTAAAATCTTTTTCCTTGTTTTCAGTATCCAAAATTTGATATACTGTACTTTATCAGAAAGCTCTTAAAATTTCACAAATTTCTAAAAAAGAACCAAATCTCTAGGACCACTGAGAGCCGAGATATAAGCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>232 226 181 97 71 55 36 31 24 14 12 9 6 6</canonical_bands>
                <polymorphic_bands>232 226 181 97 71 55 43 36 24 14 9 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTGGTTTCTTTACGGGTCTA</pcr_primer_p1>
		<pcr_primer_p2>AGGACTCACTGGAATCTAACTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTTGGTTTCTTTACGGGTCTAGCTAGAATTTTGCGGGCTTTCTTATGACTACGCTGAAATTTTTCGAGAAATTTGAATTTCAAACTTTCAAATCTCCAAAATTTTTCAGCTTCCTCGACAAAGTCGACATCGTCCGCCAGAACAACTACGATCCATCCGAGCAAGATATCCTTAGATGTCGTGTCATGACCACCGGAATTTTCGAGACCAAATTCGAAGTCGACAAAGTTAGATTCCAGTGAGTCCT</canonical_amplicon>
		<polymorphic_amplicon>CTTGGTTTCTTTACGGGTCTAGCTAGAATTTTGCGGGCTTTCTTATGACTACGCTGAAATTYTTCGAGAAATTTGAATTTCAAACTTTCAAATCTCCAAAATTTTTCAGCTTCCTCGACAAAGTCGACATCGTCCGCCAGAACAACTACGATCCATCCGAGCAAGATATCCTTAGATGTCGTGTCATGACCACCGGAATTTTCGAGACCAAATTCGAAGTCGACAAAGTTAGATTCCAGTGAGTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17142</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>1012462</contig_pos>
        <strand>+</strand>
        <context>TGAAAGCCTG[A/T]AAAATTTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACAGTTTTCAAACAAAAACTTATATTCTTTTATATTTTCTGAAAGCCTG</left_flank>
        <right_flank>AAAATTTGAATTCATAGTGTCAAAAAACGAGTCTTCTAGCTCACCGGAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATAACAGAAACTACCGTAGTCATTCATCTAAATTTTCTATGATTCCAGGAGTTCTACGATCACATCCTCGTCTGCTGGAAGGATAAGGGAGTCATCGCATGCTTCGAGAGATCCAGCGAGTACCAACTCATCGATTGCGCACAATAGTGAGTTTTTTTTTTTTTCCAAAAAAAAATACCAACAATTTTACACAATTATGTGAAAAAATCAAGTCTCTAGCTCTTCTGGGAGCCGAGATATAGCGGTTTGAAGTTTGGGAAGACGCAGACAGACAGAGTGCCTCGTTGTCTGCGTCTCCCCCTTCTCCACGCTCTTTCGTAGAAGCTTGGAAAGCTGATATCTCGGCTCCTAGAGCTCCTAGAAACTTGATTTAAAAACAGGTTTGTAGGGAAAAGCAGTGGCTATTAGATGAAACCGATTGCTAATAACTTTTTCAAATCTTTTTCGACAGTTTTCAAACAAAAACTTATATTCTTTTATATTTTCTGAAAGCCTGAAAAATTTGAATTCATAGTGTCAAAAAACGAGTCTTCTAGCTCACCGGAGAGCCGAAATATGGCTCGCGCAAGTTTGCGGCGAGCGGGAAGGGGAGGAGAGACGCAGGCGCACAGGCTGCCTCCCTGTCGGCGTCTCCTCTTTCCGTACACTCCCTCACGCGCCTAAAACTACAAATGCTTGTAACTCCGCTCCTATTGGGTCTAGAAACTTGGTTTCTTTACGGGTCTAGCTAGAATTTTGCGGGCTTTCTTATGACTACGCTGAAATTTTTCGAGAAATTTGAATTTCAAACTTTCAAATCTCCAAAATTTTTCAGCTTCCTCGACAAAGTCGACATCGTCCGCCAGAACAACTACGATCCATCCGAGCAAGATATCCTTAGATGTCGTGTCATGACCACCGGAATTTTCGAGACCAAATTCGAAGTCGACAAAGTTAGATTCCAGTGAGTCCTGAGAGAGTCCAATAGAGCACATTTACCTTTTTTGAATTCCAGCAT</canonical>
            <polymorphic>AAAATAACAGAAACTACCGTAGTCATTCATCTAAATTTTCTATGATTCCAGGAGTTCTACGATCACATCCTCGTCTGCTGGAAGGATAAGGGAGTCATCGCATGCTTCGAGAGATCCAGCGAGTACCAACTCATCGATTGCGCACAATAGTGAGTTTTTTTTTTTTTCCAAAAAAAAATACCAACAATTTTACACAATTATGTGAAAAAATCAAGTCTCTAGCTCTTCTGGGAGCCGAGATATAGCGGTTTGAAGTTTGGGAAGACGCAGACAGACAGAGTGCCTCGTTGTCTGCGTCTCCCCCTTCTCCACGCTCTTTCGTAGAAGCTTGGAAAGCTGATATCTCGGCTCCTAGAGCTCCTAGAAACTTGATTTAAAAACAGGTTTGTAGGGAAAAGCAGTGGCTATTAGATGAAACCGATTGCTAATAACTTTTTCAAATCTTTTTCGACAGTTTTCAAACAAAAACTTATATTCTTTTATATTTTCTGAAAGCCTGWAAAATTTGAATTCATAGTGTCAAAAAACGAGTCTTCTAGCTCACCGGAGAGCCGAAATATGGCTCGCGCAAGTTTGCGGCGAGCGGGAAGGGGAGGAGAGACGCAGGCGCACAGGCTGCCTCCCTGTCGGCGTCTCCTCTTTCCGTACACTCCCTCACGCGCCTAAAACTACAAATGCTTGTAACTCCGCTCCTATTGGGTCTAGAAACTTGGTTTCTTTACGGGTCTAGCTAGAATTTTGCGGGCTTTCTTATGACTACGCTGAAATTTTTCGAGAAATTTGAATTTCAAACTTTCAAATCTCCAAAATTTTTCAGCTTCCTCGACAAAGTCGACATCGTCCGCCAGAACAACTACGATCCATCCGAGCAAGATATCCTTAGATGTCGTGTCATGACCACCGGAATTTTCGAGACCAAATTCGAAGTCGACAAAGTTAGATTCCAGTGAGTCCTGAGAGAGTCCAATAGAGCACATTTACCTTTTTTGAATTCCAGCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCTTTTTCGACAGTTTTCA</pcr_primer_p1>
		<pcr_primer_p2>GGAGTTACAAGCATTTGTAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATCTTTTTCGACAGTTTTCAAACAAAAACTTATATTCTTTTATATTTTCTGAAAGCCTGAAAAATTTGAATTCATAGTGTCAAAAAACGAGTCTTCTAGCTCACCGGAGAGCCGAAATATGGCTCGCGCAAGTTTGCGGCGAGCGGGAAGGGGAGGAGAGACGCAGGCGCACAGGCTGCCTCCCTGTCGGCGTCTCCTCTTTCCGTACACTCCCTCACGCGCCTAAAACTACAAATGCTTGTAACTCC</canonical_amplicon>
		<polymorphic_amplicon>AAATCTTTTTCGACAGTTTTCAAACAAAAACTTATATTCTTTTATATTTTCTGAAAGCCTGWAAAATTTGAATTCATAGTGTCAAAAAACGAGTCTTCTAGCTCACCGGAGAGCCGAAATATGGCTCGCGCAAGTTTGCGGCGAGCGGGAAGGGGAGGAGAGACGCAGGCGCACAGGCTGCCTCCCTGTCGGCGTCTCCTCTTTCCGTACACTCCCTCACGCGCCTAAAACTACAAATGCTTGTAACTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17143</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>1012360</contig_pos>
        <strand>+</strand>
        <context>GTAGGGAAAA[A/G]CAGTGGCTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTCCTAGAGCTCCTAGAAACTTGATTTAAAAACAGGTTTGTAGGGAAAA</left_flank>
        <right_flank>CAGTGGCTATTAGATGAAACCGATTGCTAATAACTTTTTCAAATCTTTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGAGCCGAGATATGAGCATTTGAAGTTCTAGGAGTTTTCGTCTCTTCAAATGACTATATCTCGGCTTACAGAAATCCTAGAAAAATGGTTTTCTCTGGAAAAATAACAGAAACTACCGTAGTCATTCATCTAAATTTTCTATGATTCCAGGAGTTCTACGATCACATCCTCGTCTGCTGGAAGGATAAGGGAGTCATCGCATGCTTCGAGAGATCCAGCGAGTACCAACTCATCGATTGCGCACAATAGTGAGTTTTTTTTTTTTTCCAAAAAAAAATACCAACAATTTTACACAATTATGTGAAAAAATCAAGTCTCTAGCTCTTCTGGGAGCCGAGATATAGCGGTTTGAAGTTTGGGAAGACGCAGACAGACAGAGTGCCTCGTTGTCTGCGTCTCCCCCTTCTCCACGCTCTTTCGTAGAAGCTTGGAAAGCTGATATCTCGGCTCCTAGAGCTCCTAGAAACTTGATTTAAAAACAGGTTTGTAGGGAAAAGCAGTGGCTATTAGATGAAACCGATTGCTAATAACTTTTTCAAATCTTTTTCGACAGTTTTCAAACAAAAACTTATATTCTTTTATATTTTCTGAAAGCCTGAAAAATTTGAATTCATAGTGTCAAAAAACGAGTCTTCTAGCTCACCGGAGAGCCGAAATATGGCTCGCGCAAGTTTGCGGCGAGCGGGAAGGGGAGGAGAGACGCAGGCGCACAGGCTGCCTCCCTGTCGGCGTCTCCTCTTTCCGTACACTCCCTCACGCGCCTAAAACTACAAATGCTTGTAACTCCGCTCCTATTGGGTCTAGAAACTTGGTTTCTTTACGGGTCTAGCTAGAATTTTGCGGGCTTTCTTATGACTACGCTGAAATTTTTCGAGAAATTTGAATTTCAAACTTTCAAATCTCCAAAATTTTTCAGCTTCCTCGACAAAGTCGACATCGTCCGCCAGAACAACTACGATCCATCCGAGCAAGATATCCTTAGATGTCGTGTCATGAC</canonical>
            <polymorphic>TTTGGAGCCGAGATATGAGCATTTGAAGTTCTAGGAGTTTTCGTCTCTTCAAATGACTATATCTCGGCTTACAGAAATCCTAGAAAAATGGTTTTCTCTGGAAAAATAACAGAAACTACCGTAGTCATTCATCTAAATTTTCTATGATTCCAGGAGTTCTACGATCACATCCTCGTCTGCTGGAAGGATAAGGGAGTCATCGCATGCTTCGAGAGATCCAGCGAGTACCAACTCATCGATTGCGCACAATAGTGAGTTTTTTTTTTTTTCCAAAAAAAAATACCAACAATTTTACACAATTATGTGAAAAAATCAAGTCTCTAGCTCTTCTGGGAGCCGAGATATAGCGGTTTGAAGTTTGGGAAGACGCAGACAGACAGAGTGCCTCGTTGTCTGCGTCTCCCCCTTCTCCACGCTCTTTCGTAGAAGCTTGGAAAGCTGATATCTCGGCTCCTAGAGCTCCTAGAAACTTGATTTAAAAACAGGTTTGTAGGGAAAARCAGTGGCTATTAGATGAAACCGATTGCTAATAACTTTTTCAAATCTTTTTCGACAGTTTTCAAACAAAAACTTATATTCTTTTATATTTTCTGAAAGCCTGAAAAATTTGAATTCATAGTGTCAAAAAACGAGTCTTCTAGCTCACCGGAGAGCCGAAATATGGCTCGCGCAAGTTTGCGGCGAGCGGGAAGGGGAGGAGAGACGCAGGCGCACAGGCTGCCTCCCTGTCGGCGTCTCCTCTTTCCGTACACTCCCTCACGCGCCTAAAACTACAAATGCTTGTAACTCCGCTCCTATTGGGTCTAGAAACTTGGTTTCTTTACGGGTCTAGCTAGAATTTTGCGGGCTTTCTTATGACTACGCTGAAATTTTTCGAGAAATTTGAATTTCAAACTTTCAAATCTCCAAAATTTTTCAGCTTCCTCGACAAAGTCGACATCGTCCGCCAGAACAACTACGATCCATCCGAGCAAGATATCCTTAGATGTCGTGTCATGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGCGCACAATAGTGAGTT</pcr_primer_p1>
		<pcr_primer_p2>GTCGAAAAAGATTTGAAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>316</pcr_amplicon_size>
		<canonical_amplicon>ATTGCGCACAATAGTGAGTTTTTTTTTTTTTCCAAAAAAAAATACCAACAATTTTACACAATTATGTGAAAAAATCAAGTCTCTAGCTCTTCTGGGAGCCGAGATATAGCGGTTTGAAGTTTGGGAAGACGCAGACAGACAGAGTGCCTCGTTGTCTGCGTCTCCCCCTTCTCCACGCTCTTTCGTAGAAGCTTGGAAAGCTGATATCTCGGCTCCTAGAGCTCCTAGAAACTTGATTTAAAAACAGGTTTGTAGGGAAAAGCAGTGGCTATTAGATGAAACCGATTGCTAATAACTTTTTCAAATCTTTTTCGAC</canonical_amplicon>
		<polymorphic_amplicon>ATTGCGCACAATAGTGAGTTTTTTTTTTTTTCCAAAAAAAAATACCAACAATTTTACACAATTATGTGAAAAAATCAAGTCTCTAGCTCTTCTGGGAGCCGAGATATAGCGGTTTGAAGTTTGGGAAGACGCAGACAGACAGAGTGCCTCGTTGTCTGCGTCTCCCCCTTCTCCACGCTCTTTCGTAGAAGCTTGGAAAGCTGATATCTCGGCTCCTAGAGCTCCTAGAAACTTGATTTAAAAACAGGTTTGTAGGGAAAARCAGTGGCTATTAGATGAAACCGATTGCTAATAACTTTTTCAAATCTTTTTCGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17144</snp_id>
        <super_contig>c009802110.Contig1</super_contig>
        <contig_pos>23499</contig_pos>
        <strand>+</strand>
        <context>TCATTATTAT[A/T]TATGAACACA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGCTGAATCTAATGGCTTAGGTGTGATTTTTGATCTTTTTCATTATTAT</left_flank>
        <right_flank>TATGAACACAAAATAAATCCTATCATATAAATCTCATATTGCAATACATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGACCAAAAACCAGCTTTCTAGTACTACTAGTACCCGAGATACAGCCATTTTAAGTTTTGAAGAGACGCAGGCAGTTAGAGTGTCTCGTTGTCTGCGTCTCTAGCCTTCAAAACTTCAAACGGCTGTATCTCCGCTCCTAGATCAGCTAAAGATCTCAAAGTTTTTGTAAAATTCTCAAAATTTTTAGAGCAATCTGATAAAACTTAAAATTCTCAATAAAAACTTCATGATCCATGATTTTTTCAAAACTTGAATTTTGGAAGTTTTGTTTAGATTTTGAAGATTTGAAAAAGTCATTCATTTCTCTTCAAAAATCAGTTTTCTAGCTGATCTAGAAACCAAAATACAGCGGATTGAAGTTTTGAAGAGACCCAGACAGTCAGAGTGTCTCGTGGTCTGCGTCTCTAGCCTTTTAAACTTTAACTGACTGTATCTCGGCTCCTCGATATGCTGAATCTAATGGCTTAGGTGTGATTTTTGATCTTTTTCATTATTATTTATGAACACAAAATAAATCCTATCATATAAATCTCATATTGCAATACATAATATCTACTTATTCTTATAGGTGTTCACAATTTTTAATGAAAAAAACAAGAAAAAACATAATCTAGAACATCCTATAAGATTTATGAATCATTTTTTCTCTAGAAAATGCAGGGGAAAAAACTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGTAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCCCGAACAATATATTTTTTTTCTGAAACCTTTTAAGTGA</canonical>
            <polymorphic>CTGACCAAAAACCAGCTTTCTAGTACTACTAGTACCCGAGATACAGCCATTTTAAGTTTTGAAGAGACGCAGGCAGTTAGAGTGTCTCGTTGTCTGCGTCTCTAGCCTTCAAAACTTCAAACGGCTGTATCTCCGCTCCTAGATCAGCTAAAGATCTCAAAGTTTTTGTAAAATTCTCAAAATTTTTAGAGCAATCTGATAAAACTTAAAATTCTCAATAAAAACTTCATGATCCATGATTTTTTCAAAACTTGAATTTTGGAAGTTTTGTTTAGATTTTGAAGATTTGAAAAAGTCATTCATTTCTCTTCAAAAATCAGTTTTCTAGCTGATCTAGAAACCAAAATACAGCGGATTGAAGTTTTGAAGAGACCCAGACAGTCAGAGTGTCTCGTGGTCTGCGTCTCTAGCCTTTTAAACTTTAACTGACTGTATCTCGGCTCCTCGATATGCTGAATCTAATGGCTTAGGTGTGATTTTTGATCTTTTTCATTATTATWTATGAACACAAAATAAATCCTATCATATAAATCTCATATTGCAATACATAATATCTACTTATTCTTATAGGTGTTCACAATTTTTAATGAAAAAAACAAGAAAAAACATAATCTAGAACATCCTATAAGATTTATGAATCATTTTTTCTCTAGAAAATGCAGGGGAAAAAACTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGTAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCCCGAACAATATATTTTTTTTCTGAAACCTTTTAAGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAGTTTTGTTTAGATTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTGTGAACACCTATAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>325</pcr_amplicon_size>
		<canonical_amplicon>GGAAGTTTTGTTTAGATTTTGAAGATTTGAAAAAGTCATTCATTTCTCTTCAAAAATCAGTTTTCTAGCTGATCTAGAAACCAAAATACAGCGGATTGAAGTTTTGAAGAGACCCAGACAGTCAGAGTGTCTCGTGGTCTGCGTCTCTAGCCTTTTAAACTTTAACTGACTGTATCTCGGCTCCTCGATATGCTGAATCTAATGGCTTAGGTGTGATTTTTGATCTTTTTCATTATTATTTATGAACACAAAATAAATCCTATCATATAAATCTCATATTGCAATACATAATATCTACTTATTCTTATAGGTGTTCACAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>GGAAGTTTTGTTTAGATTTTGAAGATTTGAAAAAGTCATTCATTTCTCTTCAAAAATCAGTTTTCTAGCTGATCTAGAAACCAAAATACAGCGGATTGAAGTTTTGAAGAGACCCAGACAGTCAGAGTGTCTCGTGGTCTGCGTCTCTAGCCTTTTAAACTTTAACTGACTGTATCTCGGCTCCTCGATATGCTGAATCTAATGGCTTAGGTGTGATTTTTGATCTTTTTCATTATTATWTATGAACACAAAATAAATCCTATCATATAAATCTCATATTGCAATACATAATATCTACTTATTCTTATAGGTGTTCACAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17145</snp_id>
        <super_contig>c009802110.Contig1</super_contig>
        <contig_pos>23525</contig_pos>
        <strand>+</strand>
        <context>AATCCTATCA[A/T]ATAAATCTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTTGATCTTTTTCATTATTATTTATGAACACAAAATAAATCCTATCA</left_flank>
        <right_flank>ATAAATCTCATATTGCAATACATAATATCTACTTATTCTTATAGGTGTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTAGTACCCGAGATACAGCCATTTTAAGTTTTGAAGAGACGCAGGCAGTTAGAGTGTCTCGTTGTCTGCGTCTCTAGCCTTCAAAACTTCAAACGGCTGTATCTCCGCTCCTAGATCAGCTAAAGATCTCAAAGTTTTTGTAAAATTCTCAAAATTTTTAGAGCAATCTGATAAAACTTAAAATTCTCAATAAAAACTTCATGATCCATGATTTTTTCAAAACTTGAATTTTGGAAGTTTTGTTTAGATTTTGAAGATTTGAAAAAGTCATTCATTTCTCTTCAAAAATCAGTTTTCTAGCTGATCTAGAAACCAAAATACAGCGGATTGAAGTTTTGAAGAGACCCAGACAGTCAGAGTGTCTCGTGGTCTGCGTCTCTAGCCTTTTAAACTTTAACTGACTGTATCTCGGCTCCTCGATATGCTGAATCTAATGGCTTAGGTGTGATTTTTGATCTTTTTCATTATTATTTATGAACACAAAATAAATCCTATCATATAAATCTCATATTGCAATACATAATATCTACTTATTCTTATAGGTGTTCACAATTTTTAATGAAAAAAACAAGAAAAAACATAATCTAGAACATCCTATAAGATTTATGAATCATTTTTTCTCTAGAAAATGCAGGGGAAAAAACTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGTAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCCCGAACAATATATTTTTTTTCTGAAACCTTTTAAGTGATTTTTCTCTCTCTTTATCACTAGTTT</canonical>
            <polymorphic>TACTAGTACCCGAGATACAGCCATTTTAAGTTTTGAAGAGACGCAGGCAGTTAGAGTGTCTCGTTGTCTGCGTCTCTAGCCTTCAAAACTTCAAACGGCTGTATCTCCGCTCCTAGATCAGCTAAAGATCTCAAAGTTTTTGTAAAATTCTCAAAATTTTTAGAGCAATCTGATAAAACTTAAAATTCTCAATAAAAACTTCATGATCCATGATTTTTTCAAAACTTGAATTTTGGAAGTTTTGTTTAGATTTTGAAGATTTGAAAAAGTCATTCATTTCTCTTCAAAAATCAGTTTTCTAGCTGATCTAGAAACCAAAATACAGCGGATTGAAGTTTTGAAGAGACCCAGACAGTCAGAGTGTCTCGTGGTCTGCGTCTCTAGCCTTTTAAACTTTAACTGACTGTATCTCGGCTCCTCGATATGCTGAATCTAATGGCTTAGGTGTGATTTTTGATCTTTTTCATTATTATTTATGAACACAAAATAAATCCTATCAWATAAATCTCATATTGCAATACATAATATCTACTTATTCTTATAGGTGTTCACAATTTTTAATGAAAAAAACAAGAAAAAACATAATCTAGAACATCCTATAAGATTTATGAATCATTTTTTCTCTAGAAAATGCAGGGGAAAAAACTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGTAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCCCGAACAATATATTTTTTTTCTGAAACCTTTTAAGTGATTTTTCTCTCTCTTTATCACTAGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCTAATGGCTTAGGTGTGATT</pcr_primer_p1>
		<pcr_primer_p2>TTCATTAAAAATTGTGAACACCT</pcr_primer_p2>
		<pcr_amplicon_size>136</pcr_amplicon_size>
		<canonical_amplicon>AATCTAATGGCTTAGGTGTGATTTTTGATCTTTTTCATTATTATTTATGAACACAAAATAAATCCTATCATATAAATCTCATATTGCAATACATAATATCTACTTATTCTTATAGGTGTTCACAATTTTTAATGAA</canonical_amplicon>
		<polymorphic_amplicon>AATCTAATGGCTTAGGTGTGATTTTTGATCTTTTTCATTATTATTTATGAACACAAAATAAATCCTATCAWATAAATCTCATATTGCAATACATAATATCTACTTATTCTTATAGGTGTTCACAATTTTTAATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17147</snp_id>
        <super_contig>c009802110.Contig1</super_contig>
        <contig_pos>27497</contig_pos>
        <strand></strand>
        <context>TGAGTTWCCT[C/G]AAAAAAACCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTGAAATATTCAACATGTTTTTTTTTCAAATCTCGAAATTTGAGTTTCCT</left_flank>
        <right_flank>AAAAAAACCAACGTTCATGTTTTCAAGGAAGTGACCAGGTTTTCTGACTG</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAGGCTTAGGAATGCATTTTTTTTTGACAATTATCTAAGCCTGAGAAACAGCATAATCACGGAGTGATTACTGTATTGCCCAAATTTTCCTCATATGTAAATTGGGTTCATCGGCAAGATGCGAGAGAATAGGAGCTAAAATTGTTAGGAGTAGTCATGTCATCCTATAAGACCTTAAAACTCAAACTACTCGCACAGTTCAAATACTAGTACATTATTCCAACATCTGCGCGTTTTTCGTATTTTGGACCTCTATTTTTTCTTGGGACTTCTAAACTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTATTTTGGGACCTCTAATTTTTTTTCGGACCTCTAAATTTTTTTGGAACCTCTAAACTAGAAAAGAGCCGAATTTTTTTCAATGAAAAATCCAGAAATTCAGAAAATCATCAAACTCGGTCCCAGACAAATTCTGAAATATTCAACATGTTTTTTTTTCAAATCTCGAAATTTGAGTTTCCTCAAAAAAACCAACGTTCATGTTTTCAAGGAAGTGACCAGGTTTTCTGACTGAGTGGGAGAGGAAATAATTTTCAGATTTTTTTCAGAAATTTCTGGAAAAAACATGTTCCCATTTTTTCGTGGACACAGGAAATTGGGGGGGGGGGTGTTTGGGAAGGAGGTAATAGAAGAATGTTTGTGTTTTTCTGAGCAATGGTAGCAATTATTTTTGTTTGAGGATTCATTATTCAGAATTTCTAGATTTTCAATAATTTTCCTTTTTCTGTTTGTCCAAATGTCCGCAAAAAAAAAAATATAAAATGTACCCATTTTCCACTCAGAACGGGCGGATTTTTGATGTTTCTCCCCAAGTATTTCATATCCCTTTAATGCAAATTTTATTGGAGAATTTTGAGAGAGAGAGAGAGAGGAAGAGAAGAGAGACGCAGAGAAAAAAATTGATAAAAAATTTCTGGAAGTTTTATACTTCCTTTGGGCTATTTTCCTTTTTTTTTTGAGTCA</canonical>
            <polymorphic>AATAGGCTTAGGAATGCATTTTTTTTTGACAATTATCTAAGCCTGAGAAACAGCATAATCACGGAGTGATTACTGTATTGCCCAAATTTTCCTCATATGTAAATTGGGTTCATCGGCAAGATGCGAGAGAATAGGAGCTAAAATTGTTAGGAGTAGTCATGTCATCCTATAAGACCTTAAAACTCAAACTACTCGCACAGTTCAAATACTAGTACATTATTCCAACATCTGCGCGTTTTTCGTATTTTGGACCTCTATTTTTTCTTGGGACTTCTAAACTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTATTTTGGGACCTCTAATTTTTTTTCGGACCTCTAAATTTTTTTGGAACCTCTAAACTAGAAAAGAGCCGAATTTTTTTCAATGAAAAATCCAGAAATTCAGAAAATCATCAAACTCGGTCCCAGACAAATTCTGAAATATTCAACATGTTTTTTTTTCAAATCTCGAAATTTGAGTTTCCTSAAAAAAACCAACGTTCATGTTTTCAAGGAAGTGACCAGGTTTTCTGACTGAGTGGGAGAGGAAATAATTTTCAGATTTTTTTCAGAAATTTCTGGAAAAAACATGTTCCCATTTTTTCGTGGACACAGGAAATTGGGGGGGGGGGTGTTTGGGAAGGAGGTAATAGAAGAATGTTTGTGTTTTTCTGAGCAATGGTAGCAATTATTTTTGTTTGAGGATTCATTATTCAGAATTTCTAGATTTTCAATAATTTTCCTTTTTCTGTTTGTCCAAATGTCCGCAAAAAAAAAAATATAAAATGTACCCATTTTCCACTCAGAACGGGCGGATTTTTGATGTTTCTCCCCAAGTATTTCATATCCCTTTAATGCAAATTTTATTGGAGAATTTTGAGAGAGAGAGAGAGAGGAAGAGAAGAGAGACGCAGAGAAAAAAATTGATAAAAAATTTCTGGAAGTTTTATACTTCCTTTGGGCTATTTTCCTTTTTTTTTTGAGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGACAAATTCTGAAATATTCAAC</pcr_primer_p1>
		<pcr_primer_p2>CTCAGAAAAACACAAACATTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGACAAATTCTGAAATATTCAACATGTTTTTTTTTCAAATCTCGAAATTTGAGTTTCCTCAAAAAAACCAACGTTCATGTTTTCAAGGAAGTGACCAGGTTTTCTGACTGAGTGGGAGAGGAAATAATTTTCAGATTTTTTTCAGAAATTTCTGGAAAAAACATGTTCCCATTTTTTCGTGGACACAGGAAATTGGGGGGGGGGGTGTTTGGGAAGGAGGTAATAGAAGAATGTTTGTGTTTTTCTGAG</canonical_amplicon>
		<polymorphic_amplicon>CAGACAAATTCTGAAATATTCAACATGTTTTTTTTTCAAATCTCGAAATTTGAGTTTCCTSAAAAAAACCAACGTTCATGTTTTCAAGGAAGTGACCAGGTTTTCTGACTGAGTGGGAGAGGAAATAATTTTCAGATTTTTTTCAGAAATTTCTGGAAAAAACATGTTCCCATTTTTTCGTGGACACAGGAAATTGGGGGGGGGGGTGTTTGGGAAGGAGGTAATAGAAGAATGTTTGTGTTTTTCTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17148</snp_id>
        <super_contig>c009802110.Contig1</super_contig>
        <contig_pos>41871</contig_pos>
        <strand>+</strand>
        <context>AAACTGTTTC[A/G]AATTTTCAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTCTTTTTTTTCATGCTAATTGATTAATGATCGCTTATAAACTGTTTC</left_flank>
        <right_flank>AATTTTCAGAAACTCTACAACGAATCTACTAGAATCAACGTCTTCTGAAT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTCAGAAATTCAGAAATTCTGAATTTTGAAAATTCTAGAAATCCCAAGACATTCCAAATTCCAAATCCCATCTTTCAAACTTTTCTAGAATTTTCTAAATCTTCCTTTTTTCTCTAAATCTCCAATCCCTCCAAATTTGGGTCCACGTGATTCCAATCACCTGATTCCATTCATCAAATTCATTATCTTCGAAAATCACAAAAATTCTTTTTCTGGGCCACGTCACCAATTTTTGTACATAAAAACGGAAAATAATATATGAATATAATTATTACAATCAAAACAAGAAATTCCTTCTCCTCTTCCGATCATTGGACACTTTTTCTTCCCCTTTTGTTGCCCCAAAATTATCGTAAAAATCAAAATTCAAATTTCCCGCCAAAATACACTTTGATCACTGATTGCTGAATTTTCTCAAATTTTGTAACTTCCAAAATTTTGATTTTTTCTCTTTTTTTTCATGCTAATTGATTAATGATCGCTTATAAACTGTTTCGAATTTTCAGAAACTCTACAACGAATCTACTAGAATCAACGTCTTCTGAATAAGTCAATAACATTTTTTTTGAATTTTTTTTTAAATAAAAAATGGTCCTCCTCTCGGCAATCGATCAGGGAACCTCGTCCAGCCGATTCCTGGTTTTTGAAGCGGATACCGGAGAATTGGTGACCAGCCATCAGGTACAGTAACCCAGAATTTTTTTCAAGTTTTGAAAATTTTTCAGATCGAAGTCCGTCAACTATTTCCGGCGGCAGGATGGGTGGAAATGGACCCAATGGAAATTTACGATACCGTAATCTCGTGTATTCAAAAAACTATCGAGAAATTGGAAAACCTGGGAATCACCGCCGATGAGATCAAGTCGGTGGGCGTGGCCAATCAGAGAGGTACTGTAGAAACTAGTTTTTGGGTTACTGTAGCGCTTTCTTACTGAATCATTATCACTAAAATCATTATCAGAAGGACTACTGTATCTTTTCAAAACATTGGGTTACT</canonical>
            <polymorphic>AAATTCAGAAATTCAGAAATTCTGAATTTTGAAAATTCTAGAAATCCCAAGACATTCCAAATTCCAAATCCCATCTTTCAAACTTTTCTAGAATTTTCTAAATCTTCCTTTTTTCTCTAAATCTCCAATCCCTCCAAATTTGGGTCCACGTGATTCCAATCACCTGATTCCATTCATCAAATTCATTATCTTCGAAAATCACAAAAATTCTTTTTCTGGGCCACGTCACCAATTTTTGTACATAAAAACGGAAAATAATATATGAATATAATTATTACAATCAAAACAAGAAATTCCTTCTCCTCTTCCGATCATTGGACACTTTTTCTTCCCCTTTTGTTGCCCCAAAATTATCGTAAAAATCAAAATTCAAATTTCCCGCCAAAATACACTTTGATCACTGATTGCTGAATTTTCTCAAATTTTGTAACTTCCAAAATTTTGATTTTTTCTCTTTTTTTTCATGCTAATTGATTAATGATCGCTTATAAACTGTTTCRAATTTTCAGAAACTCTACAACGAATCTACTAGAATCAACGTCTTCTGAATAAGTCAATAACATTTTTTTTGAATTTTTTTTTAAATAAAAAATGGTCCTCCTCTCGGCAATCGATCAGGGAACCTCGTCCAGCCGATTCCTGGTTTTTGAAGCGGATACCGGAGAATTGGTGACCAGCCATCAGGTACAGTAACCCAGAATTTTTTTCAAGTTTTGAAAATTTTTCAGATCGAAGTCCGTCAACTATTTCCGGCGGCAGGATGGGTGGAAATGGACCCAATGGAAATTTACGATACCGTAATCTCGTGTATTCAAAAAACTATCGAGAAATTGGAAAACCTGGGAATCACCGCCGATGAGATCAAGTCGGTGGGCGTGGCCAATCAGAGAGGTACTGTAGAAACTAGTTTTTGGGTTACTGTAGCGCTTTCTTACTGAATCATTATCACTAAAATCATTATCAGAAGGACTACTGTATCTTTTCAAAACATTGGGTTACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>216 127 86 75 71 66 63 45 43 38 32 26 26 20 17 10 9 8 8 7 6 1</canonical_bands>
                <polymorphic_bands>216 134 127 86 75 66 45 43 38 32 26 26 20 17 10 9 8 8 7 6 1</polymorphic_bands>
            </assay>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 306 192</canonical_bands>
                <polymorphic_bands>808 192</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>306 193 176 119 113 93</canonical_bands>
                <polymorphic_bands>419 193 176 119 93</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCATTGGACACTTTTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>TGACTTATTCAGAAGACGTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GATCATTGGACACTTTTTCTTCCCCTTTTGTTGCCCCAAAATTATCGTAAAAATCAAAATTCAAATTTCCCGCCAAAATACACTTTGATCACTGATTGCTGAATTTTCTCAAATTTTGTAACTTCCAAAATTTTGATTTTTTCTCTTTTTTTTCATGCTAATTGATTAATGATCGCTTATAAACTGTTTCGAATTTTCAGAAACTCTACAACGAATCTACTAGAATCAACGTCTTCTGAATAAGTCA</canonical_amplicon>
		<polymorphic_amplicon>GATCATTGGACACTTTTTCTTCCCCTTTTGTTGCCCCAAAATTATCGTAAAAATCAAAATTCAAATTTCCCGCCAAAATACACTTTGATCACTGATTGCTGAATTTTCTCAAATTTTGTAACTTCCAAAATTTTGATTTTTTCTCTTTTTTTTCATGCTAATTGATTAATGATCGCTTATAAACTGTTTCRAATTTTCAGAAACTCTACAACGAATCTACTAGAATCAACGTCTTCTGAATAAGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17149</snp_id>
        <super_contig>c009802110.Contig1</super_contig>
        <contig_pos>41929</contig_pos>
        <strand>+</strand>
        <context>AATAAGTCAA[A/T]AACatttttt</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAAACTCTACAACGAATCTACTAGAATCAACGTCTTCTGAATAAGTCAA</left_flank>
        <right_flank>AACATTTTTTTTGAATTTTTTTTTAAATAAAAAATGGTCCTCCTCTCGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTCCAAATCCCATCTTTCAAACTTTTCTAGAATTTTCTAAATCTTCCTTTTTTCTCTAAATCTCCAATCCCTCCAAATTTGGGTCCACGTGATTCCAATCACCTGATTCCATTCATCAAATTCATTATCTTCGAAAATCACAAAAATTCTTTTTCTGGGCCACGTCACCAATTTTTGTACATAAAAACGGAAAATAATATATGAATATAATTATTACAATCAAAACAAGAAATTCCTTCTCCTCTTCCGATCATTGGACACTTTTTCTTCCCCTTTTGTTGCCCCAAAATTATCGTAAAAATCAAAATTCAAATTTCCCGCCAAAATACACTTTGATCACTGATTGCTGAATTTTCTCAAATTTTGTAACTTCCAAAATTTTGATTTTTTCTCTTTTTTTTCATGCTAATTGATTAATGATCGCTTATAAACTGTTTCGAATTTTCAGAAACTCTACAACGAATCTACTAGAATCAACGTCTTCTGAATAAGTCAATAACATTTTTTTTGAATTTTTTTTTAAATAAAAAATGGTCCTCCTCTCGGCAATCGATCAGGGAACCTCGTCCAGCCGATTCCTGGTTTTTGAAGCGGATACCGGAGAATTGGTGACCAGCCATCAGGTACAGTAACCCAGAATTTTTTTCAAGTTTTGAAAATTTTTCAGATCGAAGTCCGTCAACTATTTCCGGCGGCAGGATGGGTGGAAATGGACCCAATGGAAATTTACGATACCGTAATCTCGTGTATTCAAAAAACTATCGAGAAATTGGAAAACCTGGGAATCACCGCCGATGAGATCAAGTCGGTGGGCGTGGCCAATCAGAGAGGTACTGTAGAAACTAGTTTTTGGGTTACTGTAGCGCTTTCTTACTGAATCATTATCACTAAAATCATTATCAGAAGGACTACTGTATCTTTTCAAAACATTGGGTTACTATAGTGTGAACTACCGTAATCCGGAATTTTCAAAGAAATGTTTTTGAGGTTACTGTAT</canonical>
            <polymorphic>AAATTCCAAATCCCATCTTTCAAACTTTTCTAGAATTTTCTAAATCTTCCTTTTTTCTCTAAATCTCCAATCCCTCCAAATTTGGGTCCACGTGATTCCAATCACCTGATTCCATTCATCAAATTCATTATCTTCGAAAATCACAAAAATTCTTTTTCTGGGCCACGTCACCAATTTTTGTACATAAAAACGGAAAATAATATATGAATATAATTATTACAATCAAAACAAGAAATTCCTTCTCCTCTTCCGATCATTGGACACTTTTTCTTCCCCTTTTGTTGCCCCAAAATTATCGTAAAAATCAAAATTCAAATTTCCCGCCAAAATACACTTTGATCACTGATTGCTGAATTTTCTCAAATTTTGTAACTTCCAAAATTTTGATTTTTTCTCTTTTTTTTCATGCTAATTGATTAATGATCGCTTATAAACTGTTTCGAATTTTCAGAAACTCTACAACGAATCTACTAGAATCAACGTCTTCTGAATAAGTCAAWAACATTTTTTTTGAATTTTTTTTTAAATAAAAAATGGTCCTCCTCTCGGCAATCGATCAGGGAACCTCGTCCAGCCGATTCCTGGTTTTTGAAGCGGATACCGGAGAATTGGTGACCAGCCATCAGGTACAGTAACCCAGAATTTTTTTCAAGTTTTGAAAATTTTTCAGATCGAAGTCCGTCAACTATTTCCGGCGGCAGGATGGGTGGAAATGGACCCAATGGAAATTTACGATACCGTAATCTCGTGTATTCAAAAAACTATCGAGAAATTGGAAAACCTGGGAATCACCGCCGATGAGATCAAGTCGGTGGGCGTGGCCAATCAGAGAGGTACTGTAGAAACTAGTTTTTGGGTTACTGTAGCGCTTTCTTACTGAATCATTATCACTAAAATCATTATCAGAAGGACTACTGTATCTTTTCAAAACATTGGGTTACTATAGTGTGAACTACCGTAATCCGGAATTTTCAAAGAAATGTTTTTGAGGTTACTGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAGAAACTCTACAACGAATCT</pcr_primer_p1>
		<pcr_primer_p2>ATAGTTGACGGACTTCGATCT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTCAGAAACTCTACAACGAATCTACTAGAATCAACGTCTTCTGAATAAGTCAATAACATTTTTTTTGAATTTTTTTTTAAATAAAAAATGGTCCTCCTCTCGGCAATCGATCAGGGAACCTCGTCCAGCCGATTCCTGGTTTTTGAAGCGGATACCGGAGAATTGGTGACCAGCCATCAGGTACAGTAACCCAGAATTTTTTTCAAGTTTTGAAAATTTTTCAGATCGAAGTCCGTCAACTAT</canonical_amplicon>
		<polymorphic_amplicon>TTCAGAAACTCTACAACGAATCTACTAGAATCAACGTCTTCTGAATAAGTCAAWAACATTTTTTTTGAATTTTTTTTTAAATAAAAAATGGTCCTCCTCTCGGCAATCGATCAGGGAACCTCGTCCAGCCGATTCCTGGTTTTTGAAGCGGATACCGGAGAATTGGTGACCAGCCATCAGGTACAGTAACCCAGAATTTTTTTCAAGTTTTGAAAATTTTTCAGATCGAAGTCCGTCAACTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17159</snp_id>
        <super_contig>c009802110.Contig1</super_contig>
        <contig_pos>41942</contig_pos>
        <strand></strand>
        <context>Catttttttt[G/T]rawttttttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGAATCTACTAGAATCAACGTCTTCTGAATAAGTCAATAACATTTTTTTT</left_flank>
        <right_flank>AATTTTTTTTTAAATAAAAAATGGTCCTCCTCTCGGCAATCGATCAGGGA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCTTTCAAACTTTTCTAGAATTTTCTAAATCTTCCTTTTTTCTCTAAATCTCCAATCCCTCCAAATTTGGGTCCACGTGATTCCAATCACCTGATTCCATTCATCAAATTCATTATCTTCGAAAATCACAAAAATTCTTTTTCTGGGCCACGTCACCAATTTTTGTACATAAAAACGGAAAATAATATATGAATATAATTATTACAATCAAAACAAGAAATTCCTTCTCCTCTTCCGATCATTGGACACTTTTTCTTCCCCTTTTGTTGCCCCAAAATTATCGTAAAAATCAAAATTCAAATTTCCCGCCAAAATACACTTTGATCACTGATTGCTGAATTTTCTCAAATTTTGTAACTTCCAAAATTTTGATTTTTTCTCTTTTTTTTCATGCTAATTGATTAATGATCGCTTATAAACTGTTTCGAATTTTCAGAAACTCTACAACGAATCTACTAGAATCAACGTCTTCTGAATAAGTCAATAACATTTTTTTTGAATTTTTTTTTAAATAAAAAATGGTCCTCCTCTCGGCAATCGATCAGGGAACCTCGTCCAGCCGATTCCTGGTTTTTGAAGCGGATACCGGAGAATTGGTGACCAGCCATCAGGTACAGTAACCCAGAATTTTTTTCAAGTTTTGAAAATTTTTCAGATCGAAGTCCGTCAACTATTTCCGGCGGCAGGATGGGTGGAAATGGACCCAATGGAAATTTACGATACCGTAATCTCGTGTATTCAAAAAACTATCGAGAAATTGGAAAACCTGGGAATCACCGCCGATGAGATCAAGTCGGTGGGCGTGGCCAATCAGAGAGGTACTGTAGAAACTAGTTTTTGGGTTACTGTAGCGCTTTCTTACTGAATCATTATCACTAAAATCATTATCAGAAGGACTACTGTATCTTTTCAAAACATTGGGTTACTATAGTGTGAACTACCGTAATCCGGAATTTTCAAAGAAATGTTTTTGAGGTTACTGTATGATTACTGTAGCT</canonical>
            <polymorphic>CATCTTTCAAACTTTTCTAGAATTTTCTAAATCTTCCTTTTTTCTCTAAATCTCCAATCCCTCCAAATTTGGGTCCACGTGATTCCAATCACCTGATTCCATTCATCAAATTCATTATCTTCGAAAATCACAAAAATTCTTTTTCTGGGCCACGTCACCAATTTTTGTACATAAAAACGGAAAATAATATATGAATATAATTATTACAATCAAAACAAGAAATTCCTTCTCCTCTTCCGATCATTGGACACTTTTTCTTCCCCTTTTGTTGCCCCAAAATTATCGTAAAAATCAAAATTCAAATTTCCCGCCAAAATACACTTTGATCACTGATTGCTGAATTTTCTCAAATTTTGTAACTTCCAAAATTTTGATTTTTTCTCTTTTTTTTCATGCTAATTGATTAATGATCGCTTATAAACTGTTTCGAATTTTCAGAAACTCTACAACGAATCTACTAGAATCAACGTCTTCTGAATAAGTCAATAACATTTTTTTTKAATTTTTTTTTAAATAAAAAATGGTCCTCCTCTCGGCAATCGATCAGGGAACCTCGTCCAGCCGATTCCTGGTTTTTGAAGCGGATACCGGAGAATTGGTGACCAGCCATCAGGTACAGTAACCCAGAATTTTTTTCAAGTTTTGAAAATTTTTCAGATCGAAGTCCGTCAACTATTTCCGGCGGCAGGATGGGTGGAAATGGACCCAATGGAAATTTACGATACCGTAATCTCGTGTATTCAAAAAACTATCGAGAAATTGGAAAACCTGGGAATCACCGCCGATGAGATCAAGTCGGTGGGCGTGGCCAATCAGAGAGGTACTGTAGAAACTAGTTTTTGGGTTACTGTAGCGCTTTCTTACTGAATCATTATCACTAAAATCATTATCAGAAGGACTACTGTATCTTTTCAAAACATTGGGTTACTATAGTGTGAACTACCGTAATCCGGAATTTTCAAAGAAATGTTTTTGAGGTTACTGTATGATTACTGTAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>240 127 86 75 71 66 63 47 45 43 38 26 20 20 17 10 6</canonical_bands>
                <polymorphic_bands>240 198 86 75 66 63 47 45 43 38 26 20 20 17 10 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAGAAACTCTACAACGAATCT</pcr_primer_p1>
		<pcr_primer_p2>ATAGTTGACGGACTTCGATCT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTCAGAAACTCTACAACGAATCTACTAGAATCAACGTCTTCTGAATAAGTCAATAACATTTTTTTTGAATTTTTTTTTAAATAAAAAATGGTCCTCCTCTCGGCAATCGATCAGGGAACCTCGTCCAGCCGATTCCTGGTTTTTGAAGCGGATACCGGAGAATTGGTGACCAGCCATCAGGTACAGTAACCCAGAATTTTTTTCAAGTTTTGAAAATTTTTCAGATCGAAGTCCGTCAACTAT</canonical_amplicon>
		<polymorphic_amplicon>TTCAGAAACTCTACAACGAATCTACTAGAATCAACGTCTTCTGAATAAGTCAATAACATTTTTTTTKAATTTTTTTTTAAATAAAAAATGGTCCTCCTCTCGGCAATCGATCAGGGAACCTCGTCCAGCCGATTCCTGGTTTTTGAAGCGGATACCGGAGAATTGGTGACCAGCCATCAGGTACAGTAACCCAGAATTTTTTTCAAGTTTTGAAAATTTTTCAGATCGAAGTCCGTCAACTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17160</snp_id>
        <super_contig>c009802110.Contig1</super_contig>
        <contig_pos>41943</contig_pos>
        <strand></strand>
        <context>attttttttk[A/G]awtttttttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATCTACTAGAATCAACGTCTTCTGAATAAGTCAATAACATTTTTTTTG</left_flank>
        <right_flank>ATTTTTTTTTAAATAAAAAATGGTCCTCCTCTCGGCAATCGATCAGGGAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTTTCAAACTTTTCTAGAATTTTCTAAATCTTCCTTTTTTCTCTAAATCTCCAATCCCTCCAAATTTGGGTCCACGTGATTCCAATCACCTGATTCCATTCATCAAATTCATTATCTTCGAAAATCACAAAAATTCTTTTTCTGGGCCACGTCACCAATTTTTGTACATAAAAACGGAAAATAATATATGAATATAATTATTACAATCAAAACAAGAAATTCCTTCTCCTCTTCCGATCATTGGACACTTTTTCTTCCCCTTTTGTTGCCCCAAAATTATCGTAAAAATCAAAATTCAAATTTCCCGCCAAAATACACTTTGATCACTGATTGCTGAATTTTCTCAAATTTTGTAACTTCCAAAATTTTGATTTTTTCTCTTTTTTTTCATGCTAATTGATTAATGATCGCTTATAAACTGTTTCGAATTTTCAGAAACTCTACAACGAATCTACTAGAATCAACGTCTTCTGAATAAGTCAATAACATTTTTTTTGAATTTTTTTTTAAATAAAAAATGGTCCTCCTCTCGGCAATCGATCAGGGAACCTCGTCCAGCCGATTCCTGGTTTTTGAAGCGGATACCGGAGAATTGGTGACCAGCCATCAGGTACAGTAACCCAGAATTTTTTTCAAGTTTTGAAAATTTTTCAGATCGAAGTCCGTCAACTATTTCCGGCGGCAGGATGGGTGGAAATGGACCCAATGGAAATTTACGATACCGTAATCTCGTGTATTCAAAAAACTATCGAGAAATTGGAAAACCTGGGAATCACCGCCGATGAGATCAAGTCGGTGGGCGTGGCCAATCAGAGAGGTACTGTAGAAACTAGTTTTTGGGTTACTGTAGCGCTTTCTTACTGAATCATTATCACTAAAATCATTATCAGAAGGACTACTGTATCTTTTCAAAACATTGGGTTACTATAGTGTGAACTACCGTAATCCGGAATTTTCAAAGAAATGTTTTTGAGGTTACTGTATGATTACTGTAGCTC</canonical>
            <polymorphic>ATCTTTCAAACTTTTCTAGAATTTTCTAAATCTTCCTTTTTTCTCTAAATCTCCAATCCCTCCAAATTTGGGTCCACGTGATTCCAATCACCTGATTCCATTCATCAAATTCATTATCTTCGAAAATCACAAAAATTCTTTTTCTGGGCCACGTCACCAATTTTTGTACATAAAAACGGAAAATAATATATGAATATAATTATTACAATCAAAACAAGAAATTCCTTCTCCTCTTCCGATCATTGGACACTTTTTCTTCCCCTTTTGTTGCCCCAAAATTATCGTAAAAATCAAAATTCAAATTTCCCGCCAAAATACACTTTGATCACTGATTGCTGAATTTTCTCAAATTTTGTAACTTCCAAAATTTTGATTTTTTCTCTTTTTTTTCATGCTAATTGATTAATGATCGCTTATAAACTGTTTCGAATTTTCAGAAACTCTACAACGAATCTACTAGAATCAACGTCTTCTGAATAAGTCAATAACATTTTTTTTGRATTTTTTTTTAAATAAAAAATGGTCCTCCTCTCGGCAATCGATCAGGGAACCTCGTCCAGCCGATTCCTGGTTTTTGAAGCGGATACCGGAGAATTGGTGACCAGCCATCAGGTACAGTAACCCAGAATTTTTTTCAAGTTTTGAAAATTTTTCAGATCGAAGTCCGTCAACTATTTCCGGCGGCAGGATGGGTGGAAATGGACCCAATGGAAATTTACGATACCGTAATCTCGTGTATTCAAAAAACTATCGAGAAATTGGAAAACCTGGGAATCACCGCCGATGAGATCAAGTCGGTGGGCGTGGCCAATCAGAGAGGTACTGTAGAAACTAGTTTTTGGGTTACTGTAGCGCTTTCTTACTGAATCATTATCACTAAAATCATTATCAGAAGGACTACTGTATCTTTTCAAAACATTGGGTTACTATAGTGTGAACTACCGTAATCCGGAATTTTCAAAGAAATGTTTTTGAGGTTACTGTATGATTACTGTAGCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>240 127 86 75 71 66 63 48 45 43 38 26 20 19 17 10 6</canonical_bands>
                <polymorphic_bands>240 198 86 75 66 63 48 45 43 38 26 20 19 17 10 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>196 93 71 66 57 48 45 44 43 39 38 34 32 31 26 25 22 20 19 18 17 10 6</canonical_bands>
                <polymorphic_bands>196 164 66 57 48 45 44 43 39 38 34 32 31 26 25 22 20 19 18 17 10 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAGAAACTCTACAACGAATCT</pcr_primer_p1>
		<pcr_primer_p2>ATAGTTGACGGACTTCGATCT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTCAGAAACTCTACAACGAATCTACTAGAATCAACGTCTTCTGAATAAGTCAATAACATTTTTTTTGAATTTTTTTTTAAATAAAAAATGGTCCTCCTCTCGGCAATCGATCAGGGAACCTCGTCCAGCCGATTCCTGGTTTTTGAAGCGGATACCGGAGAATTGGTGACCAGCCATCAGGTACAGTAACCCAGAATTTTTTTCAAGTTTTGAAAATTTTTCAGATCGAAGTCCGTCAACTAT</canonical_amplicon>
		<polymorphic_amplicon>TTCAGAAACTCTACAACGAATCTACTAGAATCAACGTCTTCTGAATAAGTCAATAACATTTTTTTTGRATTTTTTTTTAAATAAAAAATGGTCCTCCTCTCGGCAATCGATCAGGGAACCTCGTCCAGCCGATTCCTGGTTTTTGAAGCGGATACCGGAGAATTGGTGACCAGCCATCAGGTACAGTAACCCAGAATTTTTTTCAAGTTTTGAAAATTTTTCAGATCGAAGTCCGTCAACTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17162</snp_id>
        <super_contig>c009802110.Contig1</super_contig>
        <contig_pos>41945</contig_pos>
        <strand></strand>
        <context>tttttttkra[T/A]ttttttttaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATCTACTAGAATCAACGTCTTCTGAATAAGTCAATAACATTTTTTTTGAA</left_flank>
        <right_flank>TTTTTTTTAAATAAAAAATGGTCCTCCTCTCGGCAATCGATCAGGGAACC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTCAAACTTTTCTAGAATTTTCTAAATCTTCCTTTTTTCTCTAAATCTCCAATCCCTCCAAATTTGGGTCCACGTGATTCCAATCACCTGATTCCATTCATCAAATTCATTATCTTCGAAAATCACAAAAATTCTTTTTCTGGGCCACGTCACCAATTTTTGTACATAAAAACGGAAAATAATATATGAATATAATTATTACAATCAAAACAAGAAATTCCTTCTCCTCTTCCGATCATTGGACACTTTTTCTTCCCCTTTTGTTGCCCCAAAATTATCGTAAAAATCAAAATTCAAATTTCCCGCCAAAATACACTTTGATCACTGATTGCTGAATTTTCTCAAATTTTGTAACTTCCAAAATTTTGATTTTTTCTCTTTTTTTTCATGCTAATTGATTAATGATCGCTTATAAACTGTTTCGAATTTTCAGAAACTCTACAACGAATCTACTAGAATCAACGTCTTCTGAATAAGTCAATAACATTTTTTTTGAATTTTTTTTTAAATAAAAAATGGTCCTCCTCTCGGCAATCGATCAGGGAACCTCGTCCAGCCGATTCCTGGTTTTTGAAGCGGATACCGGAGAATTGGTGACCAGCCATCAGGTACAGTAACCCAGAATTTTTTTCAAGTTTTGAAAATTTTTCAGATCGAAGTCCGTCAACTATTTCCGGCGGCAGGATGGGTGGAAATGGACCCAATGGAAATTTACGATACCGTAATCTCGTGTATTCAAAAAACTATCGAGAAATTGGAAAACCTGGGAATCACCGCCGATGAGATCAAGTCGGTGGGCGTGGCCAATCAGAGAGGTACTGTAGAAACTAGTTTTTGGGTTACTGTAGCGCTTTCTTACTGAATCATTATCACTAAAATCATTATCAGAAGGACTACTGTATCTTTTCAAAACATTGGGTTACTATAGTGTGAACTACCGTAATCCGGAATTTTCAAAGAAATGTTTTTGAGGTTACTGTATGATTACTGTAGCTCTA</canonical>
            <polymorphic>CTTTCAAACTTTTCTAGAATTTTCTAAATCTTCCTTTTTTCTCTAAATCTCCAATCCCTCCAAATTTGGGTCCACGTGATTCCAATCACCTGATTCCATTCATCAAATTCATTATCTTCGAAAATCACAAAAATTCTTTTTCTGGGCCACGTCACCAATTTTTGTACATAAAAACGGAAAATAATATATGAATATAATTATTACAATCAAAACAAGAAATTCCTTCTCCTCTTCCGATCATTGGACACTTTTTCTTCCCCTTTTGTTGCCCCAAAATTATCGTAAAAATCAAAATTCAAATTTCCCGCCAAAATACACTTTGATCACTGATTGCTGAATTTTCTCAAATTTTGTAACTTCCAAAATTTTGATTTTTTCTCTTTTTTTTCATGCTAATTGATTAATGATCGCTTATAAACTGTTTCGAATTTTCAGAAACTCTACAACGAATCTACTAGAATCAACGTCTTCTGAATAAGTCAATAACATTTTTTTTGAAWTTTTTTTTAAATAAAAAATGGTCCTCCTCTCGGCAATCGATCAGGGAACCTCGTCCAGCCGATTCCTGGTTTTTGAAGCGGATACCGGAGAATTGGTGACCAGCCATCAGGTACAGTAACCCAGAATTTTTTTCAAGTTTTGAAAATTTTTCAGATCGAAGTCCGTCAACTATTTCCGGCGGCAGGATGGGTGGAAATGGACCCAATGGAAATTTACGATACCGTAATCTCGTGTATTCAAAAAACTATCGAGAAATTGGAAAACCTGGGAATCACCGCCGATGAGATCAAGTCGGTGGGCGTGGCCAATCAGAGAGGTACTGTAGAAACTAGTTTTTGGGTTACTGTAGCGCTTTCTTACTGAATCATTATCACTAAAATCATTATCAGAAGGACTACTGTATCTTTTCAAAACATTGGGTTACTATAGTGTGAACTACCGTAATCCGGAATTTTCAAAGAAATGTTTTTGAGGTTACTGTATGATTACTGTAGCTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>240 127 86 75 71 66 63 50 45 43 38 26 20 17 17 10 6</canonical_bands>
                <polymorphic_bands>240 198 86 75 66 63 50 45 43 38 26 20 17 17 10 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>196 93 71 66 57 50 45 44 43 39 38 34 32 31 26 25 22 20 18 17 17 10 6</canonical_bands>
                <polymorphic_bands>196 164 66 57 50 45 44 43 39 38 34 32 31 26 25 22 20 18 17 17 10 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAGAAACTCTACAACGAATCT</pcr_primer_p1>
		<pcr_primer_p2>ATAGTTGACGGACTTCGATCT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTCAGAAACTCTACAACGAATCTACTAGAATCAACGTCTTCTGAATAAGTCAATAACATTTTTTTTGAATTTTTTTTTAAATAAAAAATGGTCCTCCTCTCGGCAATCGATCAGGGAACCTCGTCCAGCCGATTCCTGGTTTTTGAAGCGGATACCGGAGAATTGGTGACCAGCCATCAGGTACAGTAACCCAGAATTTTTTTCAAGTTTTGAAAATTTTTCAGATCGAAGTCCGTCAACTAT</canonical_amplicon>
		<polymorphic_amplicon>TTCAGAAACTCTACAACGAATCTACTAGAATCAACGTCTTCTGAATAAGTCAATAACATTTTTTTTGAAWTTTTTTTTAAATAAAAAATGGTCCTCCTCTCGGCAATCGATCAGGGAACCTCGTCCAGCCGATTCCTGGTTTTTGAAGCGGATACCGGAGAATTGGTGACCAGCCATCAGGTACAGTAACCCAGAATTTTTTTCAAGTTTTGAAAATTTTTCAGATCGAAGTCCGTCAACTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17182</snp_id>
        <super_contig>c009802110.Contig1</super_contig>
        <contig_pos>42043</contig_pos>
        <strand>+</strand>
        <context>GAGAATTGGT[C/G]ACCAGCCATC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACCTCGTCCAGCCGATTCCTGGTTTTTGAAGCGGATACCGGAGAATTGGT</left_flank>
        <right_flank>ACCAGCCATCAGGTACAGTAACCCAGAATTTTTTTCAAGTTTTGAAAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCATCAAATTCATTATCTTCGAAAATCACAAAAATTCTTTTTCTGGGCCACGTCACCAATTTTTGTACATAAAAACGGAAAATAATATATGAATATAATTATTACAATCAAAACAAGAAATTCCTTCTCCTCTTCCGATCATTGGACACTTTTTCTTCCCCTTTTGTTGCCCCAAAATTATCGTAAAAATCAAAATTCAAATTTCCCGCCAAAATACACTTTGATCACTGATTGCTGAATTTTCTCAAATTTTGTAACTTCCAAAATTTTGATTTTTTCTCTTTTTTTTCATGCTAATTGATTAATGATCGCTTATAAACTGTTTCGAATTTTCAGAAACTCTACAACGAATCTACTAGAATCAACGTCTTCTGAATAAGTCAATAACATTTTTTTTGAATTTTTTTTTAAATAAAAAATGGTCCTCCTCTCGGCAATCGATCAGGGAACCTCGTCCAGCCGATTCCTGGTTTTTGAAGCGGATACCGGAGAATTGGTGACCAGCCATCAGGTACAGTAACCCAGAATTTTTTTCAAGTTTTGAAAATTTTTCAGATCGAAGTCCGTCAACTATTTCCGGCGGCAGGATGGGTGGAAATGGACCCAATGGAAATTTACGATACCGTAATCTCGTGTATTCAAAAAACTATCGAGAAATTGGAAAACCTGGGAATCACCGCCGATGAGATCAAGTCGGTGGGCGTGGCCAATCAGAGAGGTACTGTAGAAACTAGTTTTTGGGTTACTGTAGCGCTTTCTTACTGAATCATTATCACTAAAATCATTATCAGAAGGACTACTGTATCTTTTCAAAACATTGGGTTACTATAGTGTGAACTACCGTAATCCGGAATTTTCAAAGAAATGTTTTTGAGGTTACTGTATGATTACTGTAGCTCTATTTCTTTTCAGAAACCAGCATTGTTTGGGACAAAACCACTGGTAAACCACTGTACAATGCGATCGTTTGGTTGGATACCAGAACTTCTGGATTGGCGG</canonical>
            <polymorphic>TTCATCAAATTCATTATCTTCGAAAATCACAAAAATTCTTTTTCTGGGCCACGTCACCAATTTTTGTACATAAAAACGGAAAATAATATATGAATATAATTATTACAATCAAAACAAGAAATTCCTTCTCCTCTTCCGATCATTGGACACTTTTTCTTCCCCTTTTGTTGCCCCAAAATTATCGTAAAAATCAAAATTCAAATTTCCCGCCAAAATACACTTTGATCACTGATTGCTGAATTTTCTCAAATTTTGTAACTTCCAAAATTTTGATTTTTTCTCTTTTTTTTCATGCTAATTGATTAATGATCGCTTATAAACTGTTTCGAATTTTCAGAAACTCTACAACGAATCTACTAGAATCAACGTCTTCTGAATAAGTCAATAACATTTTTTTTGAATTTTTTTTTAAATAAAAAATGGTCCTCCTCTCGGCAATCGATCAGGGAACCTCGTCCAGCCGATTCCTGGTTTTTGAAGCGGATACCGGAGAATTGGTSACCAGCCATCAGGTACAGTAACCCAGAATTTTTTTCAAGTTTTGAAAATTTTTCAGATCGAAGTCCGTCAACTATTTCCGGCGGCAGGATGGGTGGAAATGGACCCAATGGAAATTTACGATACCGTAATCTCGTGTATTCAAAAAACTATCGAGAAATTGGAAAACCTGGGAATCACCGCCGATGAGATCAAGTCGGTGGGCGTGGCCAATCAGAGAGGTACTGTAGAAACTAGTTTTTGGGTTACTGTAGCGCTTTCTTACTGAATCATTATCACTAAAATCATTATCAGAAGGACTACTGTATCTTTTCAAAACATTGGGTTACTATAGTGTGAACTACCGTAATCCGGAATTTTCAAAGAAATGTTTTTGAGGTTACTGTATGATTACTGTAGCTCTATTTCTTTTCAGAAACCAGCATTGTTTGGGACAAAACCACTGGTAAACCACTGTACAATGCGATCGTTTGGTTGGATACCAGAACTTCTGGATTGGCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>272 104 95 93 70 70 58 49 41 41 29 23 22 11 9 6 5 2</canonical_bands>
                <polymorphic_bands>367 104 93 70 70 58 49 41 41 29 23 22 11 9 6 5 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>503 445 52</canonical_bands>
                <polymorphic_bands>948 52</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAGAAACTCTACAACGAATCT</pcr_primer_p1>
		<pcr_primer_p2>ATAGTTGACGGACTTCGATCT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTCAGAAACTCTACAACGAATCTACTAGAATCAACGTCTTCTGAATAAGTCAATAACATTTTTTTTGAATTTTTTTTTAAATAAAAAATGGTCCTCCTCTCGGCAATCGATCAGGGAACCTCGTCCAGCCGATTCCTGGTTTTTGAAGCGGATACCGGAGAATTGGTGACCAGCCATCAGGTACAGTAACCCAGAATTTTTTTCAAGTTTTGAAAATTTTTCAGATCGAAGTCCGTCAACTAT</canonical_amplicon>
		<polymorphic_amplicon>TTCAGAAACTCTACAACGAATCTACTAGAATCAACGTCTTCTGAATAAGTCAATAACATTTTTTTTGAATTTTTTTTTAAATAAAAAATGGTCCTCCTCTCGGCAATCGATCAGGGAACCTCGTCCAGCCGATTCCTGGTTTTTGAAGCGGATACCGGAGAATTGGTSACCAGCCATCAGGTACAGTAACCCAGAATTTTTTTCAAGTTTTGAAAATTTTTCAGATCGAAGTCCGTCAACTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17183</snp_id>
        <super_contig>c009802110.Contig1</super_contig>
        <contig_pos>42382</contig_pos>
        <strand>+</strand>
        <context>ATAGTGTGAA[C/G]TACCGTAATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCAGAAGGACTACTGTATCTTTTCAAAACATTGGGTTACTATAGTGTGAA</left_flank>
        <right_flank>TACCGTAATCCGGAATTTTCAAAGAAATGTTTTTGAGGTTACTGTATGAT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCTACAACGAATCTACTAGAATCAACGTCTTCTGAATAAGTCAATAACATTTTTTTTGAATTTTTTTTTAAATAAAAAATGGTCCTCCTCTCGGCAATCGATCAGGGAACCTCGTCCAGCCGATTCCTGGTTTTTGAAGCGGATACCGGAGAATTGGTGACCAGCCATCAGGTACAGTAACCCAGAATTTTTTTCAAGTTTTGAAAATTTTTCAGATCGAAGTCCGTCAACTATTTCCGGCGGCAGGATGGGTGGAAATGGACCCAATGGAAATTTACGATACCGTAATCTCGTGTATTCAAAAAACTATCGAGAAATTGGAAAACCTGGGAATCACCGCCGATGAGATCAAGTCGGTGGGCGTGGCCAATCAGAGAGGTACTGTAGAAACTAGTTTTTGGGTTACTGTAGCGCTTTCTTACTGAATCATTATCACTAAAATCATTATCAGAAGGACTACTGTATCTTTTCAAAACATTGGGTTACTATAGTGTGAACTACCGTAATCCGGAATTTTCAAAGAAATGTTTTTGAGGTTACTGTATGATTACTGTAGCTCTATTTCTTTTCAGAAACCAGCATTGTTTGGGACAAAACCACTGGTAAACCACTGTACAATGCGATCGTTTGGTTGGATACCAGAACTTCTGGATTGGCGGATGAGGCGATTTCCAGGACCCAGTCAAAGTGAGTAGATCAACTTTTTTTTCAATTAAAAAAACTGGAAATTGAGCAAAATTAAATTTCCAACATTTCGATATATTTTTCATGAGAATCGGGTGAAAATTAAAACAGTTATGGAGTTCGAAATTGTTTGCAAATGCTAGAAACCCAGCCAGACGTAGATTGAGTGATTTTCAAAAACAGATGGCGCCAGTTTTTCTAAGAAATTCTGGTAATAAGAAAAATCACAATTTTTGCTCCATTTATCAATTTAAACCACTCTTCTAGCTCATCTAAGAGCCGAGTTACAGCGATTCAAAGTTTTGAAAATTGGA</canonical>
            <polymorphic>ACTCTACAACGAATCTACTAGAATCAACGTCTTCTGAATAAGTCAATAACATTTTTTTTGAATTTTTTTTTAAATAAAAAATGGTCCTCCTCTCGGCAATCGATCAGGGAACCTCGTCCAGCCGATTCCTGGTTTTTGAAGCGGATACCGGAGAATTGGTGACCAGCCATCAGGTACAGTAACCCAGAATTTTTTTCAAGTTTTGAAAATTTTTCAGATCGAAGTCCGTCAACTATTTCCGGCGGCAGGATGGGTGGAAATGGACCCAATGGAAATTTACGATACCGTAATCTCGTGTATTCAAAAAACTATCGAGAAATTGGAAAACCTGGGAATCACCGCCGATGAGATCAAGTCGGTGGGCGTGGCCAATCAGAGAGGTACTGTAGAAACTAGTTTTTGGGTTACTGTAGCGCTTTCTTACTGAATCATTATCACTAAAATCATTATCAGAAGGACTACTGTATCTTTTCAAAACATTGGGTTACTATAGTGTGAASTACCGTAATCCGGAATTTTCAAAGAAATGTTTTTGAGGTTACTGTATGATTACTGTAGCTCTATTTCTTTTCAGAAACCAGCATTGTTTGGGACAAAACCACTGGTAAACCACTGTACAATGCGATCGTTTGGTTGGATACCAGAACTTCTGGATTGGCGGATGAGGCGATTTCCAGGACCCAGTCAAAGTGAGTAGATCAACTTTTTTTTCAATTAAAAAAACTGGAAATTGAGCAAAATTAAATTTCCAACATTTCGATATATTTTTCATGAGAATCGGGTGAAAATTAAAACAGTTATGGAGTTCGAAATTGTTTGCAAATGCTAGAAACCCAGCCAGACGTAGATTGAGTGATTTTCAAAAACAGATGGCGCCAGTTTTTCTAAGAAATTCTGGTAATAAGAAAAATCACAATTTTTGCTCCATTTATCAATTTAAACCACTCTTCTAGCTCATCTAAGAGCCGAGTTACAGCGATTCAAAGTTTTGAAAATTGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>393 267 230 110</canonical_bands>
                <polymorphic_bands>393 377 230</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAATCAGAGAGGTACTGTAGAA</pcr_primer_p1>
		<pcr_primer_p2>GTGGTTTACCAGTGGTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CCAATCAGAGAGGTACTGTAGAAACTAGTTTTTGGGTTACTGTAGCGCTTTCTTACTGAATCATTATCACTAAAATCATTATCAGAAGGACTACTGTATCTTTTCAAAACATTGGGTTACTATAGTGTGAACTACCGTAATCCGGAATTTTCAAAGAAATGTTTTTGAGGTTACTGTATGATTACTGTAGCTCTATTTCTTTTCAGAAACCAGCATTGTTTGGGACAAAACCACTGGTAAACCAC</canonical_amplicon>
		<polymorphic_amplicon>CCAATCAGAGAGGTACTGTAGAAACTAGTTTTTGGGTTACTGTAGCGCTTTCTTACTGAATCATTATCACTAAAATCATTATCAGAAGGACTACTGTATCTTTTCAAAACATTGGGTTACTATAGTGTGAASTACCGTAATCCGGAATTTTCAAAGAAATGTTTTTGAGGTTACTGTATGATTACTGTAGCTCTATTTCTTTTCAGAAACCAGCATTGTTTGGGACAAAACCACTGGTAAACCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17184</snp_id>
        <super_contig>c009802110.Contig1</super_contig>
        <contig_pos>44202</contig_pos>
        <strand>+</strand>
        <context>AAAAAGAAAT[A/G]TTTCAGTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGAACGGAGATATGAAGGTTTGAAGTTCGGGTAGATCAAAAAGAAAT</left_flank>
        <right_flank>TTTCAGTTTCAAAATGAGCTAGGCATTCGAAAATTTGTCCAGTAGAAGAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGACACTTCTGGTGTCTACTTCGTCCCATCCTTCACTGGACTCTATACCCCGTACTGGGACTCAACGGCAAGAGGGACTATCCTTGGCCTTACTCAGGTCTCTCAAAGAGAGCACATCTGTTTGGCAGCTCTTCGCGCTGTGGCATTCCAAAGTGCTGAAATGGTGGCTGCTGTTGAGCAGGATCTGGATAATGGGACAAAAGTGACGACGCTTAAAGTGGATGGTGGAATGATTGCCAACAAATTGTTCAATGAGATTCAGGCGGACATTATGGGTGTGGATATTGTGACACCGAAGATTACGGAGATTTCGGGATGGGGAGCGGCGGTGGCTGGTGGTATTGGCGCACAGCAGATTAGTTTGGACGAGTTCTTAGAGCAGAGTAGTGAGGTAAGCTGGAGAAAAAAATGTTACACTTTTTAATTTTTGTAGCACCTCGCTAGATAGATTTTGAACGGAGATATGAAGGTTTGAAGTTCGGGTAGATCAAAAAGAAATATTTCAGTTTCAAAATGAGCTAGGCATTCGAAAATTTGTCCAGTAGAAGAATTACGTATTTCCAATAATTTTGCCAAATTTCAAAACGCTAGCACCATGAAAAGCCGAGATATGGCGCCTCGAAGTTCTAGTGGAAACCGCGACGCGACCGCAACGCGCCTCTCAAAACTTCTGGCCTCCGTATCTCAGCTGTCATTGGTCCTAGTATCTTGAAATTTGGTGAGCAGGCTAAACATAGTATTTTCAACAGTTTCACCTTTTTTTTCTAATGTGATCACTGAAACCGCGACGCGACCGCAACACGACTCTCAAAACTTCAAAACTCCATATCTCAGTTTTCGTTTGACCTAGGAATCTGAAATTTTCAGCATTATCTTGAAACTTGTTAAACTTCTAAATTTTCTATTTTTCTAAAATTCAAAATTTTCAGGACAATCGCTATACCCCACAAAAGGATGAGCAATGGCGATCGAAAGAAATGGCTCGTTGGAAAGAGGCCGT</canonical>
            <polymorphic>AGACACTTCTGGTGTCTACTTCGTCCCATCCTTCACTGGACTCTATACCCCGTACTGGGACTCAACGGCAAGAGGGACTATCCTTGGCCTTACTCAGGTCTCTCAAAGAGAGCACATCTGTTTGGCAGCTCTTCGCGCTGTGGCATTCCAAAGTGCTGAAATGGTGGCTGCTGTTGAGCAGGATCTGGATAATGGGACAAAAGTGACGACGCTTAAAGTGGATGGTGGAATGATTGCCAACAAATTGTTCAATGAGATTCAGGCGGACATTATGGGTGTGGATATTGTGACACCGAAGATTACGGAGATTTCGGGATGGGGAGCGGCGGTGGCTGGTGGTATTGGCGCACAGCAGATTAGTTTGGACGAGTTCTTAGAGCAGAGTAGTGAGGTAAGCTGGAGAAAAAAATGTTACACTTTTTAATTTTTGTAGCACCTCGCTAGATAGATTTTGAACGGAGATATGAAGGTTTGAAGTTCGGGTAGATCAAAAAGAAATRTTTCAGTTTCAAAATGAGCTAGGCATTCGAAAATTTGTCCAGTAGAAGAATTACGTATTTCCAATAATTTTGCCAAATTTCAAAACGCTAGCACCATGAAAAGCCGAGATATGGCGCCTCGAAGTTCTAGTGGAAACCGCGACGCGACCGCAACGCGCCTCTCAAAACTTCTGGCCTCCGTATCTCAGCTGTCATTGGTCCTAGTATCTTGAAATTTGGTGAGCAGGCTAAACATAGTATTTTCAACAGTTTCACCTTTTTTTTCTAATGTGATCACTGAAACCGCGACGCGACCGCAACACGACTCTCAAAACTTCAAAACTCCATATCTCAGTTTTCGTTTGACCTAGGAATCTGAAATTTTCAGCATTATCTTGAAACTTGTTAAACTTCTAAATTTTCTATTTTTCTAAAATTCAAAATTTTCAGGACAATCGCTATACCCCACAAAAGGATGAGCAATGGCGATCGAAAGAAATGGCTCGTTGGAAAGAGGCCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAGTTCTTAGAGCAGAGTAGTG</pcr_primer_p1>
		<pcr_primer_p2>ATATCTCGGCTTTTCATGGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CGAGTTCTTAGAGCAGAGTAGTGAGGTAAGCTGGAGAAAAAAATGTTACACTTTTTAATTTTTGTAGCACCTCGCTAGATAGATTTTGAACGGAGATATGAAGGTTTGAAGTTCGGGTAGATCAAAAAGAAATATTTCAGTTTCAAAATGAGCTAGGCATTCGAAAATTTGTCCAGTAGAAGAATTACGTATTTCCAATAATTTTGCCAAATTTCAAAACGCTAGCACCATGAAAAGCCGAGATAT</canonical_amplicon>
		<polymorphic_amplicon>CGAGTTCTTAGAGCAGAGTAGTGAGGTAAGCTGGAGAAAAAAATGTTACACTTTTTAATTTTTGTAGCACCTCGCTAGATAGATTTTGAACGGAGATATGAAGGTTTGAAGTTCGGGTAGATCAAAAAGAAATRTTTCAGTTTCAAAATGAGCTAGGCATTCGAAAATTTGTCCAGTAGAAGAATTACGTATTTCCAATAATTTTGCCAAATTTCAAAACGCTAGCACCATGAAAAGCCGAGATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17185</snp_id>
        <super_contig>c009802110.Contig1</super_contig>
        <contig_pos>44186</contig_pos>
        <strand>+</strand>
        <context>GAAGTTCGGG[C/T]AGATCAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACCTCGCTAGATAGATTTTGAACGGAGATATGAAGGTTTGAAGTTCGGG</left_flank>
        <right_flank>AGATCAAAAAGAAATATTTCAGTTTCAAAATGAGCTAGGCATTCGAAAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGTAGGAAGATTCAAGACACTTCTGGTGTCTACTTCGTCCCATCCTTCACTGGACTCTATACCCCGTACTGGGACTCAACGGCAAGAGGGACTATCCTTGGCCTTACTCAGGTCTCTCAAAGAGAGCACATCTGTTTGGCAGCTCTTCGCGCTGTGGCATTCCAAAGTGCTGAAATGGTGGCTGCTGTTGAGCAGGATCTGGATAATGGGACAAAAGTGACGACGCTTAAAGTGGATGGTGGAATGATTGCCAACAAATTGTTCAATGAGATTCAGGCGGACATTATGGGTGTGGATATTGTGACACCGAAGATTACGGAGATTTCGGGATGGGGAGCGGCGGTGGCTGGTGGTATTGGCGCACAGCAGATTAGTTTGGACGAGTTCTTAGAGCAGAGTAGTGAGGTAAGCTGGAGAAAAAAATGTTACACTTTTTAATTTTTGTAGCACCTCGCTAGATAGATTTTGAACGGAGATATGAAGGTTTGAAGTTCGGGTAGATCAAAAAGAAATATTTCAGTTTCAAAATGAGCTAGGCATTCGAAAATTTGTCCAGTAGAAGAATTACGTATTTCCAATAATTTTGCCAAATTTCAAAACGCTAGCACCATGAAAAGCCGAGATATGGCGCCTCGAAGTTCTAGTGGAAACCGCGACGCGACCGCAACGCGCCTCTCAAAACTTCTGGCCTCCGTATCTCAGCTGTCATTGGTCCTAGTATCTTGAAATTTGGTGAGCAGGCTAAACATAGTATTTTCAACAGTTTCACCTTTTTTTTCTAATGTGATCACTGAAACCGCGACGCGACCGCAACACGACTCTCAAAACTTCAAAACTCCATATCTCAGTTTTCGTTTGACCTAGGAATCTGAAATTTTCAGCATTATCTTGAAACTTGTTAAACTTCTAAATTTTCTATTTTTCTAAAATTCAAAATTTTCAGGACAATCGCTATACCCCACAAAAGGATGAGCAATGGCGATCGAAAGAAATGGCTC</canonical>
            <polymorphic>TTTGTAGGAAGATTCAAGACACTTCTGGTGTCTACTTCGTCCCATCCTTCACTGGACTCTATACCCCGTACTGGGACTCAACGGCAAGAGGGACTATCCTTGGCCTTACTCAGGTCTCTCAAAGAGAGCACATCTGTTTGGCAGCTCTTCGCGCTGTGGCATTCCAAAGTGCTGAAATGGTGGCTGCTGTTGAGCAGGATCTGGATAATGGGACAAAAGTGACGACGCTTAAAGTGGATGGTGGAATGATTGCCAACAAATTGTTCAATGAGATTCAGGCGGACATTATGGGTGTGGATATTGTGACACCGAAGATTACGGAGATTTCGGGATGGGGAGCGGCGGTGGCTGGTGGTATTGGCGCACAGCAGATTAGTTTGGACGAGTTCTTAGAGCAGAGTAGTGAGGTAAGCTGGAGAAAAAAATGTTACACTTTTTAATTTTTGTAGCACCTCGCTAGATAGATTTTGAACGGAGATATGAAGGTTTGAAGTTCGGGYAGATCAAAAAGAAATATTTCAGTTTCAAAATGAGCTAGGCATTCGAAAATTTGTCCAGTAGAAGAATTACGTATTTCCAATAATTTTGCCAAATTTCAAAACGCTAGCACCATGAAAAGCCGAGATATGGCGCCTCGAAGTTCTAGTGGAAACCGCGACGCGACCGCAACGCGCCTCTCAAAACTTCTGGCCTCCGTATCTCAGCTGTCATTGGTCCTAGTATCTTGAAATTTGGTGAGCAGGCTAAACATAGTATTTTCAACAGTTTCACCTTTTTTTTCTAATGTGATCACTGAAACCGCGACGCGACCGCAACACGACTCTCAAAACTTCAAAACTCCATATCTCAGTTTTCGTTTGACCTAGGAATCTGAAATTTTCAGCATTATCTTGAAACTTGTTAAACTTCTAAATTTTCTATTTTTCTAAAATTCAAAATTTTCAGGACAATCGCTATACCCCACAAAAGGATGAGCAATGGCGATCGAAAGAAATGGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGTTCTTAGAGCAGAGTAGTG</pcr_primer_p1>
		<pcr_primer_p2>ATATCTCGGCTTTTCATGGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CGAGTTCTTAGAGCAGAGTAGTGAGGTAAGCTGGAGAAAAAAATGTTACACTTTTTAATTTTTGTAGCACCTCGCTAGATAGATTTTGAACGGAGATATGAAGGTTTGAAGTTCGGGTAGATCAAAAAGAAATATTTCAGTTTCAAAATGAGCTAGGCATTCGAAAATTTGTCCAGTAGAAGAATTACGTATTTCCAATAATTTTGCCAAATTTCAAAACGCTAGCACCATGAAAAGCCGAGATAT</canonical_amplicon>
		<polymorphic_amplicon>CGAGTTCTTAGAGCAGAGTAGTGAGGTAAGCTGGAGAAAAAAATGTTACACTTTTTAATTTTTGTAGCACCTCGCTAGATAGATTTTGAACGGAGATATGAAGGTTTGAAGTTCGGGYAGATCAAAAAGAAATATTTCAGTTTCAAAATGAGCTAGGCATTCGAAAATTTGTCCAGTAGAAGAATTACGTATTTCCAATAATTTTGCCAAATTTCAAAACGCTAGCACCATGAAAAGCCGAGATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17186</snp_id>
        <super_contig>c009802110.Contig1</super_contig>
        <contig_pos>44118</contig_pos>
        <strand>+</strand>
        <context>AAAATGTTAC[A/C]CTTTTTAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACGAGTTCTTAGAGCAGAGTAGTGAGGTAAGCTGGAGAAAAAAATGTTAC</left_flank>
        <right_flank>CTTTTTAATTTTTGTAGCACCTCGCTAGATAGATTTTGAACGGAGATATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGCAACGTGGTTAGATTCTTGAGAGACAACTTCAAATTTATACAAGATGCAAAGGAGATGGAGGGGCTTTGTAGGAAGATTCAAGACACTTCTGGTGTCTACTTCGTCCCATCCTTCACTGGACTCTATACCCCGTACTGGGACTCAACGGCAAGAGGGACTATCCTTGGCCTTACTCAGGTCTCTCAAAGAGAGCACATCTGTTTGGCAGCTCTTCGCGCTGTGGCATTCCAAAGTGCTGAAATGGTGGCTGCTGTTGAGCAGGATCTGGATAATGGGACAAAAGTGACGACGCTTAAAGTGGATGGTGGAATGATTGCCAACAAATTGTTCAATGAGATTCAGGCGGACATTATGGGTGTGGATATTGTGACACCGAAGATTACGGAGATTTCGGGATGGGGAGCGGCGGTGGCTGGTGGTATTGGCGCACAGCAGATTAGTTTGGACGAGTTCTTAGAGCAGAGTAGTGAGGTAAGCTGGAGAAAAAAATGTTACACTTTTTAATTTTTGTAGCACCTCGCTAGATAGATTTTGAACGGAGATATGAAGGTTTGAAGTTCGGGTAGATCAAAAAGAAATATTTCAGTTTCAAAATGAGCTAGGCATTCGAAAATTTGTCCAGTAGAAGAATTACGTATTTCCAATAATTTTGCCAAATTTCAAAACGCTAGCACCATGAAAAGCCGAGATATGGCGCCTCGAAGTTCTAGTGGAAACCGCGACGCGACCGCAACGCGCCTCTCAAAACTTCTGGCCTCCGTATCTCAGCTGTCATTGGTCCTAGTATCTTGAAATTTGGTGAGCAGGCTAAACATAGTATTTTCAACAGTTTCACCTTTTTTTTCTAATGTGATCACTGAAACCGCGACGCGACCGCAACACGACTCTCAAAACTTCAAAACTCCATATCTCAGTTTTCGTTTGACCTAGGAATCTGAAATTTTCAGCATTATCTTGAAACTTGTTAAACTTCTAAATTTTCTATTTTTCTAAAAT</canonical>
            <polymorphic>AGGCAACGTGGTTAGATTCTTGAGAGACAACTTCAAATTTATACAAGATGCAAAGGAGATGGAGGGGCTTTGTAGGAAGATTCAAGACACTTCTGGTGTCTACTTCGTCCCATCCTTCACTGGACTCTATACCCCGTACTGGGACTCAACGGCAAGAGGGACTATCCTTGGCCTTACTCAGGTCTCTCAAAGAGAGCACATCTGTTTGGCAGCTCTTCGCGCTGTGGCATTCCAAAGTGCTGAAATGGTGGCTGCTGTTGAGCAGGATCTGGATAATGGGACAAAAGTGACGACGCTTAAAGTGGATGGTGGAATGATTGCCAACAAATTGTTCAATGAGATTCAGGCGGACATTATGGGTGTGGATATTGTGACACCGAAGATTACGGAGATTTCGGGATGGGGAGCGGCGGTGGCTGGTGGTATTGGCGCACAGCAGATTAGTTTGGACGAGTTCTTAGAGCAGAGTAGTGAGGTAAGCTGGAGAAAAAAATGTTACMCTTTTTAATTTTTGTAGCACCTCGCTAGATAGATTTTGAACGGAGATATGAAGGTTTGAAGTTCGGGTAGATCAAAAAGAAATATTTCAGTTTCAAAATGAGCTAGGCATTCGAAAATTTGTCCAGTAGAAGAATTACGTATTTCCAATAATTTTGCCAAATTTCAAAACGCTAGCACCATGAAAAGCCGAGATATGGCGCCTCGAAGTTCTAGTGGAAACCGCGACGCGACCGCAACGCGCCTCTCAAAACTTCTGGCCTCCGTATCTCAGCTGTCATTGGTCCTAGTATCTTGAAATTTGGTGAGCAGGCTAAACATAGTATTTTCAACAGTTTCACCTTTTTTTTCTAATGTGATCACTGAAACCGCGACGCGACCGCAACACGACTCTCAAAACTTCAAAACTCCATATCTCAGTTTTCGTTTGACCTAGGAATCTGAAATTTTCAGCATTATCTTGAAACTTGTTAAACTTCTAAATTTTCTATTTTTCTAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>158 115 89 79 79 51 40 39 39 39 33 28 27 25 21 19 18 15 13 11 11 10 9 9 7 7 4 3 2</canonical_bands>
                <polymorphic_bands>158 115 89 79 79 51 46 40 39 39 39 33 28 25 21 18 15 13 11 11 10 9 9 7 7 4 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAATTGTTCAATGAGATTCAG</pcr_primer_p1>
		<pcr_primer_p2>GAACTTCAAACCTTCATATCTCC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ACAAATTGTTCAATGAGATTCAGGCGGACATTATGGGTGTGGATATTGTGACACCGAAGATTACGGAGATTTCGGGATGGGGAGCGGCGGTGGCTGGTGGTATTGGCGCACAGCAGATTAGTTTGGACGAGTTCTTAGAGCAGAGTAGTGAGGTAAGCTGGAGAAAAAAATGTTACACTTTTTAATTTTTGTAGCACCTCGCTAGATAGATTTTGAACGGAGATATGAAGGTTTGAAGTTC</canonical_amplicon>
		<polymorphic_amplicon>ACAAATTGTTCAATGAGATTCAGGCGGACATTATGGGTGTGGATATTGTGACACCGAAGATTACGGAGATTTCGGGATGGGGAGCGGCGGTGGCTGGTGGTATTGGCGCACAGCAGATTAGTTTGGACGAGTTCTTAGAGCAGAGTAGTGAGGTAAGCTGGAGAAAAAAATGTTACMCTTTTTAATTTTTGTAGCACCTCGCTAGATAGATTTTGAACGGAGATATGAAGGTTTGAAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17187</snp_id>
        <super_contig>c009802110.Contig1</super_contig>
        <contig_pos>43685</contig_pos>
        <strand></strand>
        <context>AGATGGAGGG[G/A]CTTTGTAGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTCTTGAGAGACAACTTCAAATTTATACAAGATGCAAAGGAGATGGAGGG</left_flank>
        <right_flank>CTTTGTAGGAAGATTCAAGACACTTCTGGTGTCTACTTCGTCCCATCCTT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACTGTCGACACCTGGCTCATCTGGAAATTAACCGGCGCTTACGTCACCGACGTTTCGAACGCCTCCAGGACCCTTCTTCTAGATCTACACAAGAGAAAGTGGTCCACCGAACTTTGCGAGTTCTTTGATCTACCGATGGAGATTCTCCCCGAGATCAAGTCCTCTGCCGAGGTTTATGGATACCTTAAAAATGGTCCTTTAGAAGGAGTACCCCTCTCCGGATGTCTAGGAGATCAGCAAAGTGCAATGGTTGGACATCAGTGTCTAAACGCTGGCCAATCCAAGAACACCTATGGTACAGGCACTTTTATGTTGTGCAATATTGGAACAAGACCGATTATTTCGAAGAACGGATTGCTGACTACTGTAGGCTTCCAGTTTGGAGCCGATTCTCCTGTGGTATATGCGTTAGAAGGTTCTGGATCCATTGGAGGCAACGTGGTTAGATTCTTGAGAGACAACTTCAAATTTATACAAGATGCAAAGGAGATGGAGGGGCTTTGTAGGAAGATTCAAGACACTTCTGGTGTCTACTTCGTCCCATCCTTCACTGGACTCTATACCCCGTACTGGGACTCAACGGCAAGAGGGACTATCCTTGGCCTTACTCAGGTCTCTCAAAGAGAGCACATCTGTTTGGCAGCTCTTCGCGCTGTGGCATTCCAAAGTGCTGAAATGGTGGCTGCTGTTGAGCAGGATCTGGATAATGGGACAAAAGTGACGACGCTTAAAGTGGATGGTGGAATGATTGCCAACAAATTGTTCAATGAGATTCAGGCGGACATTATGGGTGTGGATATTGTGACACCGAAGATTACGGAGATTTCGGGATGGGGAGCGGCGGTGGCTGGTGGTATTGGCGCACAGCAGATTAGTTTGGACGAGTTCTTAGAGCAGAGTAGTGAGGTAAGCTGGAGAAAAAAATGTTACACTTTTTAATTTTTGTAGCACCTCGCTAGATAGATTTTGAACGGAGATATGAAGGTTTGAAGTTCGGG</canonical>
            <polymorphic>GAACTGTCGACACCTGGCTCATCTGGAAATTAACCGGCGCTTACGTCACCGACGTTTCGAACGCCTCCAGGACCCTTCTTCTAGATCTACACAAGAGAAAGTGGTCCACCGAACTTTGCGAGTTCTTTGATCTACCGATGGAGATTCTCCCCGAGATCAAGTCCTCTGCCGAGGTTTATGGATACCTTAAAAATGGTCCTTTAGAAGGAGTACCCCTCTCCGGATGTCTAGGAGATCAGCAAAGTGCAATGGTTGGACATCAGTGTCTAAACGCTGGCCAATCCAAGAACACCTATGGTACAGGCACTTTTATGTTGTGCAATATTGGAACAAGACCGATTATTTCGAAGAACGGATTGCTGACTACTGTAGGCTTCCAGTTTGGAGCCGATTCTCCTGTGGTATATGCGTTAGAAGGTTCTGGATCCATTGGAGGCAACGTGGTTAGATTCTTGAGAGACAACTTCAAATTTATACAAGATGCAAAGGAGATGGAGGGRCTTTGTAGGAAGATTCAAGACACTTCTGGTGTCTACTTCGTCCCATCCTTCACTGGACTCTATACCCCGTACTGGGACTCAACGGCAAGAGGGACTATCCTTGGCCTTACTCAGGTCTCTCAAAGAGAGCACATCTGTTTGGCAGCTCTTCGCGCTGTGGCATTCCAAAGTGCTGAAATGGTGGCTGCTGTTGAGCAGGATCTGGATAATGGGACAAAAGTGACGACGCTTAAAGTGGATGGTGGAATGATTGCCAACAAATTGTTCAATGAGATTCAGGCGGACATTATGGGTGTGGATATTGTGACACCGAAGATTACGGAGATTTCGGGATGGGGAGCGGCGGTGGCTGGTGGTATTGGCGCACAGCAGATTAGTTTGGACGAGTTCTTAGAGCAGAGTAGTGAGGTAAGCTGGAGAAAAAAATGTTACACTTTTTAATTTTTGTAGCACCTCGCTAGATAGATTTTGAACGGAGATATGAAGGTTTGAAGTTCGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>260 165 113 104 96 87 64 41 39 17 14</canonical_bands>
                <polymorphic_bands>260 217 165 96 87 64 41 39 17 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATTGGAACAAGACCGATTATT</pcr_primer_p1>
		<pcr_primer_p2>AGTACGGGGTATAGAGTCCAGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATATTGGAACAAGACCGATTATTTCGAAGAACGGATTGCTGACTACTGTAGGCTTCCAGTTTGGAGCCGATTCTCCTGTGGTATATGCGTTAGAAGGTTCTGGATCCATTGGAGGCAACGTGGTTAGATTCTTGAGAGACAACTTCAAATTTATACAAGATGCAAAGGAGATGGAGGGGCTTTGTAGGAAGATTCAAGACACTTCTGGTGTCTACTTCGTCCCATCCTTCACTGGACTCTATACCCCGTACT</canonical_amplicon>
		<polymorphic_amplicon>ATATTGGAACAAGACCGATTATTTCGAAGAACGGATTGCTGACTACTGTAGGCTTCCAGTTTGGAGCCGATTCTCCTGTGGTATATGCGTTAGAAGGTTCTGGATCCATTGGAGGCAACGTGGTTAGATTCTTGAGAGACAACTTCAAATTTATACAAGATGCAAAGGAGATGGAGGGRCTTTGTAGGAAGATTCAAGACACTTCTGGTGTCTACTTCGTCCCATCCTTCACTGGACTCTATACCCCGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17188</snp_id>
        <super_contig>c009802110.Contig1</super_contig>
        <contig_pos>103780</contig_pos>
        <strand>+</strand>
        <context>TAATAAAATA[G/T]CCCACATTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAGCAAAAAATAGTTTGGAAATGAGCTTTTTGGAAAATATAATAAAATA</left_flank>
        <right_flank>CCCACATTTGATTTCTAGTCTCTAAAATTTTCAGACAAATAACATTCTTC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGTTGTGACTGATGTGGTGGGTGTTCCAGTACCTTCACAGGGTACTGTGGACCGCGATGAGTGGGCGGAGCCGATTGGGGCGGTGCCGGTAATTGCTCATACCTCACCGAGTGTAGCGGAGCTAGCTCATAGCTCGCTGAACTCGGATTTGAATTCGAGTTTTGAAATTGGTGGGACGGTGGATTTTGAGAATTCGTCGTCCCATTCTGAGCACCGCCGTAAGCTCCGCCACCTCCTGATGACGTCGACGGTTCGCCGTATGTCACCTGACCATTGGATGTTGAGGATGATGATCCATTATTGTATGAATGATGATAGTCTTGGCTCGGACTTCTGGAAAATTAAATTTAGAAAAATTTGGAAAAAAAACTTTTTTCAAAAATTTTGGATCTTTAATTTTTGAATTTCTCTAAATGTCTTAATTTTCAATCAATTTTGATGGGATAAAAAGCAAAAAATAGTTTGGAAATGAGCTTTTTGGAAAATATAATAAAATATCCCACATTTGATTTCTAGTCTCTAAAATTTTCAGACAAATAACATTCTTCTTTTTTTCGAAATTTGACCAAAAAATCTTCATTTTCCATCAATTTTCATCGGATAAAAACTGTTAAAAATTAAAAACTCACTGAAAGTCCAAAAATCCCTGATACTGTTGTTGTGGGGGCGCCGTCGAGGGTCCTTGATGATGATGGTGGGAGGAGGACGGCAGTCGAAGCGGCGGGAGCTGATGATGATGGGGTGGATAAGAGGCGAGGGAGGAATGTCCCTCCATCGGCTCTATTTGCGCATTTACCTGTAAATTATGATTTTGAATGTTTGAATTTCAAAAAATTCAAAAATTTCCTCAAATTTTAACATTGATTTTGCAAAAATTGGCCAAAAATTGAGAAAGTTATAATTTTTAGAAAAATTTAATATTTTTTTTAATTTCAATGATTCTAACTTTTTCAGTTTTTGATTGATTTAAGTATTTTGCATATCAAAATGTAGGAAAT</canonical>
            <polymorphic>GTTGTTGTGACTGATGTGGTGGGTGTTCCAGTACCTTCACAGGGTACTGTGGACCGCGATGAGTGGGCGGAGCCGATTGGGGCGGTGCCGGTAATTGCTCATACCTCACCGAGTGTAGCGGAGCTAGCTCATAGCTCGCTGAACTCGGATTTGAATTCGAGTTTTGAAATTGGTGGGACGGTGGATTTTGAGAATTCGTCGTCCCATTCTGAGCACCGCCGTAAGCTCCGCCACCTCCTGATGACGTCGACGGTTCGCCGTATGTCACCTGACCATTGGATGTTGAGGATGATGATCCATTATTGTATGAATGATGATAGTCTTGGCTCGGACTTCTGGAAAATTAAATTTAGAAAAATTTGGAAAAAAAACTTTTTTCAAAAATTTTGGATCTTTAATTTTTGAATTTCTCTAAATGTCTTAATTTTCAATCAATTTTGATGGGATAAAAAGCAAAAAATAGTTTGGAAATGAGCTTTTTGGAAAATATAATAAAATAKCCCACATTTGATTTCTAGTCTCTAAAATTTTCAGACAAATAACATTCTTCTTTTTTTCGAAATTTGACCAAAAAATCTTCATTTTCCATCAATTTTCATCGGATAAAAACTGTTAAAAATTAAAAACTCACTGAAAGTCCAAAAATCCCTGATACTGTTGTTGTGGGGGCGCCGTCGAGGGTCCTTGATGATGATGGTGGGAGGAGGACGGCAGTCGAAGCGGCGGGAGCTGATGATGATGGGGTGGATAAGAGGCGAGGGAGGAATGTCCCTCCATCGGCTCTATTTGCGCATTTACCTGTAAATTATGATTTTGAATGTTTGAATTTCAAAAAATTCAAAAATTTCCTCAAATTTTAACATTGATTTTGCAAAAATTGGCCAAAAATTGAGAAAGTTATAATTTTTAGAAAAATTTAATATTTTTTTTAATTTCAATGATTCTAACTTTTTCAGTTTTTGATTGATTTAAGTATTTTGCATATCAAAATGTAGGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGATCTTTAATTTTTGAATTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTCAGTGAGTTTTTAATTTTTAACAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGGATCTTTAATTTTTGAATTTCTCTAAATGTCTTAATTTTCAATCAATTTTGATGGGATAAAAAGCAAAAAATAGTTTGGAAATGAGCTTTTTGGAAAATATAATAAAATATCCCACATTTGATTTCTAGTCTCTAAAATTTTCAGACAAATAACATTCTTCTTTTTTTCGAAATTTGACCAAAAAATCTTCATTTTCCATCAATTTTCATCGGATAAAAACTGTTAAAAATTAAAAACTCACTGAA</canonical_amplicon>
		<polymorphic_amplicon>TGGATCTTTAATTTTTGAATTTCTCTAAATGTCTTAATTTTCAATCAATTTTGATGGGATAAAAAGCAAAAAATAGTTTGGAAATGAGCTTTTTGGAAAATATAATAAAATAKCCCACATTTGATTTCTAGTCTCTAAAATTTTCAGACAAATAACATTCTTCTTTTTTTCGAAATTTGACCAAAAAATCTTCATTTTCCATCAATTTTCATCGGATAAAAACTGTTAAAAATTAAAAACTCACTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17189</snp_id>
        <super_contig>c009802110.Contig1</super_contig>
        <contig_pos>103917</contig_pos>
        <strand></strand>
        <context>CTCACTGAAA[G/A]TCCAAAAATC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CATCAATTTTCATCGGATAAAAACTGTTAAAAATTAAAAACTCACTGAAA</left_flank>
        <right_flank>TCCAAAAATCCCTGATACTGTTGTTGTGGGGGCGCCGTCGAGGGTCCTTG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTGAACTCGGATTTGAATTCGAGTTTTGAAATTGGTGGGACGGTGGATTTTGAGAATTCGTCGTCCCATTCTGAGCACCGCCGTAAGCTCCGCCACCTCCTGATGACGTCGACGGTTCGCCGTATGTCACCTGACCATTGGATGTTGAGGATGATGATCCATTATTGTATGAATGATGATAGTCTTGGCTCGGACTTCTGGAAAATTAAATTTAGAAAAATTTGGAAAAAAAACTTTTTTCAAAAATTTTGGATCTTTAATTTTTGAATTTCTCTAAATGTCTTAATTTTCAATCAATTTTGATGGGATAAAAAGCAAAAAATAGTTTGGAAATGAGCTTTTTGGAAAATATAATAAAATATCCCACATTTGATTTCTAGTCTCTAAAATTTTCAGACAAATAACATTCTTCTTTTTTTCGAAATTTGACCAAAAAATCTTCATTTTCCATCAATTTTCATCGGATAAAAACTGTTAAAAATTAAAAACTCACTGAAAGTCCAAAAATCCCTGATACTGTTGTTGTGGGGGCGCCGTCGAGGGTCCTTGATGATGATGGTGGGAGGAGGACGGCAGTCGAAGCGGCGGGAGCTGATGATGATGGGGTGGATAAGAGGCGAGGGAGGAATGTCCCTCCATCGGCTCTATTTGCGCATTTACCTGTAAATTATGATTTTGAATGTTTGAATTTCAAAAAATTCAAAAATTTCCTCAAATTTTAACATTGATTTTGCAAAAATTGGCCAAAAATTGAGAAAGTTATAATTTTTAGAAAAATTTAATATTTTTTTTAATTTCAATGATTCTAACTTTTTCAGTTTTTGATTGATTTAAGTATTTTGCATATCAAAATGTAGGAAATACAATTTCCTACATTTTGGTATAGCTTTCATGAAATTCGGTGAAAAATTGACAAAGTTATAGCATATTGAAAAAAAATGTCAAAAATTTTTTTTTTCAGAATTTTAAAATTTTTTTTTGGGTTTTTATATGAGAATT</canonical>
            <polymorphic>GCTGAACTCGGATTTGAATTCGAGTTTTGAAATTGGTGGGACGGTGGATTTTGAGAATTCGTCGTCCCATTCTGAGCACCGCCGTAAGCTCCGCCACCTCCTGATGACGTCGACGGTTCGCCGTATGTCACCTGACCATTGGATGTTGAGGATGATGATCCATTATTGTATGAATGATGATAGTCTTGGCTCGGACTTCTGGAAAATTAAATTTAGAAAAATTTGGAAAAAAAACTTTTTTCAAAAATTTTGGATCTTTAATTTTTGAATTTCTCTAAATGTCTTAATTTTCAATCAATTTTGATGGGATAAAAAGCAAAAAATAGTTTGGAAATGAGCTTTTTGGAAAATATAATAAAATATCCCACATTTGATTTCTAGTCTCTAAAATTTTCAGACAAATAACATTCTTCTTTTTTTCGAAATTTGACCAAAAAATCTTCATTTTCCATCAATTTTCATCGGATAAAAACTGTTAAAAATTAAAAACTCACTGAAARTCCAAAAATCCCTGATACTGTTGTTGTGGGGGCGCCGTCGAGGGTCCTTGATGATGATGGTGGGAGGAGGACGGCAGTCGAAGCGGCGGGAGCTGATGATGATGGGGTGGATAAGAGGCGAGGGAGGAATGTCCCTCCATCGGCTCTATTTGCGCATTTACCTGTAAATTATGATTTTGAATGTTTGAATTTCAAAAAATTCAAAAATTTCCTCAAATTTTAACATTGATTTTGCAAAAATTGGCCAAAAATTGAGAAAGTTATAATTTTTAGAAAAATTTAATATTTTTTTTAATTTCAATGATTCTAACTTTTTCAGTTTTTGATTGATTTAAGTATTTTGCATATCAAAATGTAGGAAATACAATTTCCTACATTTTGGTATAGCTTTCATGAAATTCGGTGAAAAATTGACAAAGTTATAGCATATTGAAAAAAAATGTCAAAAATTTTTTTTTTCAGAATTTTAAAATTTTTTTTTGGGTTTTTATATGAGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCTTCATTTTCCATCAAT</pcr_primer_p1>
		<pcr_primer_p2>CATTCAAAATCATAATTTACAGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCTTCATTTTCCATCAATTTTCATCGGATAAAAACTGTTAAAAATTAAAAACTCACTGAAAGTCCAAAAATCCCTGATACTGTTGTTGTGGGGGCGCCGTCGAGGGTCCTTGATGATGATGGTGGGAGGAGGACGGCAGTCGAAGCGGCGGGAGCTGATGATGATGGGGTGGATAAGAGGCGAGGGAGGAATGTCCCTCCATCGGCTCTATTTGCGCATTTACCTGTAAATTATGATTTTGAATG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCTTCATTTTCCATCAATTTTCATCGGATAAAAACTGTTAAAAATTAAAAACTCACTGAAARTCCAAAAATCCCTGATACTGTTGTTGTGGGGGCGCCGTCGAGGGTCCTTGATGATGATGGTGGGAGGAGGACGGCAGTCGAAGCGGCGGGAGCTGATGATGATGGGGTGGATAAGAGGCGAGGGAGGAATGTCCCTCCATCGGCTCTATTTGCGCATTTACCTGTAAATTATGATTTTGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17190</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>34077</contig_pos>
        <strand></strand>
        <context>TAAAAGACAG[G/A]AATTCTTTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAGATTATTATAGTCTAATTGTTTGGAAGATGTGTATGTATAAAAGACAG</left_flank>
        <right_flank>AATTCTTTATAAATTACTTTTTGTTAACCGGAAGTCTCAAATATTACTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACATGATAACGCTCGCCCACATGTTTCGAAACAGTGAAGCAGGAGCTGATGGGATATGGATGGAATGTTCTCCCTCACCCCCCGTATTCTCCTGATCTTGCTCCTTCCGACTATTGGTTATTTGGCGATATGACACGTGCCTTCGAAGGAAGAAGCTTCAATTCCCGTGGAGCGGTCGAAGCGGCACTCAAACAATACTTTGCCTCACGCCCGGCTGGATTCTACCGCAATGGAATCCAAAAATTGAGGGAACGTTGGAGACATGTTGTTGATAATGATGGACAATATAATTAATTATTCGGTTATTTTTTCTTTGAGAAATAAACTATTGAAAAAGTGACAAAGACTTTCCCGCCAACCTAATATTTCACCTAATTCATTTATTTTGAAATAGTATTTCTTTTGATTGATTGTTTCTCCATCAGAAGTCTCCTGAAGACGAATGTTCAGATTATTATAGTCTAATTGTTTGGAAGATGTGTATGTATAAAAGACAGGAATTCTTTATAAATTACTTTTTGTTAACCGGAAGTCTCAAATATTACTTTCAAGAACTTAATGATCCTAGAGCATTGTTTGAATTGAGAAAGGCTACATTTTGGGGGATTGTTTAGGAGGTAAGACTAGAATGCTATCTTTGTGACCCCTTAGCTCGGCTCAAAATGAAAATTCCTGTTTGATCTAAATACCAAAATGTAGAACTTGAAAAGGCCTACATCATGATATATAACTCGGCTATGTTTGAATTAGAAGTTTTGAACCACACAGTCAACGAAAAGTAGTAGGCGCTGTTCTAGCCAATATTGCAACGGGTCTGCTTTGACTAACTTCTAAACGGGGTTAGAATATAATCTAGTTTTGCACTTTGCTTTTGAATTCATTTTGTACATTTTCATAGGGCCTTCAAAATGATATCTAATTCAATTATACTTGAGCCCCGAAATACCGTCGGCGCTACACGGTCGGATTTTGCTGTTTAGGCTGTTTTAGGTCCTCTG</canonical>
            <polymorphic>CAACATGATAACGCTCGCCCACATGTTTCGAAACAGTGAAGCAGGAGCTGATGGGATATGGATGGAATGTTCTCCCTCACCCCCCGTATTCTCCTGATCTTGCTCCTTCCGACTATTGGTTATTTGGCGATATGACACGTGCCTTCGAAGGAAGAAGCTTCAATTCCCGTGGAGCGGTCGAAGCGGCACTCAAACAATACTTTGCCTCACGCCCGGCTGGATTCTACCGCAATGGAATCCAAAAATTGAGGGAACGTTGGAGACATGTTGTTGATAATGATGGACAATATAATTAATTATTCGGTTATTTTTTCTTTGAGAAATAAACTATTGAAAAAGTGACAAAGACTTTCCCGCCAACCTAATATTTCACCTAATTCATTTATTTTGAAATAGTATTTCTTTTGATTGATTGTTTCTCCATCAGAAGTCTCCTGAAGACGAATGTTCAGATTATTATAGTCTAATTGTTTGGAAGATGTGTATGTATAAAAGACAGRAATTCTTTATAAATTACTTTTTGTTAACCGGAAGTCTCAAATATTACTTTCAAGAACTTAATGATCCTAGAGCATTGTTTGAATTGAGAAAGGCTACATTTTGGGGGATTGTTTAGGAGGTAAGACTAGAATGCTATCTTTGTGACCCCTTAGCTCGGCTCAAAATGAAAATTCCTGTTTGATCTAAATACCAAAATGTAGAACTTGAAAAGGCCTACATCATGATATATAACTCGGCTATGTTTGAATTAGAAGTTTTGAACCACACAGTCAACGAAAAGTAGTAGGCGCTGTTCTAGCCAATATTGCAACGGGTCTGCTTTGACTAACTTCTAAACGGGGTTAGAATATAATCTAGTTTTGCACTTTGCTTTTGAATTCATTTTGTACATTTTCATAGGGCCTTCAAAATGATATCTAATTCAATTATACTTGAGCCCCGAAATACCGTCGGCGCTACACGGTCGGATTTTGCTGTTTAGGCTGTTTTAGGTCCTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>500 207 169 124</canonical_bands>
                <polymorphic_bands>669 207 124</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>500 376 124</canonical_bands>
                <polymorphic_bands>876 124</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTTTGATTGATTGTTTCTC</pcr_primer_p1>
		<pcr_primer_p2>GGGTCACAAAGATAGCATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTTTGATTGATTGTTTCTCCATCAGAAGTCTCCTGAAGACGAATGTTCAGATTATTATAGTCTAATTGTTTGGAAGATGTGTATGTATAAAAGACAGGAATTCTTTATAAATTACTTTTTGTTAACCGGAAGTCTCAAATATTACTTTCAAGAACTTAATGATCCTAGAGCATTGTTTGAATTGAGAAAGGCTACATTTTGGGGGATTGTTTAGGAGGTAAGACTAGAATGCTATCTTTGTGACCC</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTTTGATTGATTGTTTCTCCATCAGAAGTCTCCTGAAGACGAATGTTCAGATTATTATAGTCTAATTGTTTGGAAGATGTGTATGTATAAAAGACAGRAATTCTTTATAAATTACTTTTTGTTAACCGGAAGTCTCAAATATTACTTTCAAGAACTTAATGATCCTAGAGCATTGTTTGAATTGAGAAAGGCTACATTTTGGGGGATTGTTTAGGAGGTAAGACTAGAATGCTATCTTTGTGACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17195</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>34469</contig_pos>
        <strand></strand>
        <context>ATTTTGTACA[T/A]TTTCATAGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GTTAGAATATAATCTAGTTTTGCACTTTGCTTTTGAATTCATTTTGTACA</left_flank>
        <right_flank>TTTCATAGGGCCTTCAAAATGATATCTAATTCAATTATACTTGAGCCCCG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGTATTTCTTTTGATTGATTGTTTCTCCATCAGAAGTCTCCTGAAGACGAATGTTCAGATTATTATAGTCTAATTGTTTGGAAGATGTGTATGTATAAAAGACAGGAATTCTTTATAAATTACTTTTTGTTAACCGGAAGTCTCAAATATTACTTTCAAGAACTTAATGATCCTAGAGCATTGTTTGAATTGAGAAAGGCTACATTTTGGGGGATTGTTTAGGAGGTAAGACTAGAATGCTATCTTTGTGACCCCTTAGCTCGGCTCAAAATGAAAATTCCTGTTTGATCTAAATACCAAAATGTAGAACTTGAAAAGGCCTACATCATGATATATAACTCGGCTATGTTTGAATTAGAAGTTTTGAACCACACAGTCAACGAAAAGTAGTAGGCGCTGTTCTAGCCAATATTGCAACGGGTCTGCTTTGACTAACTTCTAAACGGGGTTAGAATATAATCTAGTTTTGCACTTTGCTTTTGAATTCATTTTGTACATTTTCATAGGGCCTTCAAAATGATATCTAATTCAATTATACTTGAGCCCCGAAATACCGTCGGCGCTACACGGTCGGATTTTGCTGTTTAGGCTGTTTTAGGTCCTCTGGCACCTAAATCAACTTTCCAATCTAATAAAATTATATATCACTTTGTAGATATTTTTAAGTTCTACATTTTGCTTTTTTATTCAAGCTGAAATTTTAATTTTGAGACAAGTTATGCGCCTGACAAGAACGCACATGAGTTTCGGTTGAAATCTTATTTTATTTTCATTTTCCGAATCAGAAAGTTATAACAATCAATAAAAATGTTTAAATTTTTTTCTGAGAAGTTTCCAGATTATCAGGCATCGTCCTCCCCATCTGAATCGTCTTCCATTGTGTTGCCTTCTTCAGAATACAAATGCAAAAGAGTTCTTTCTTTTTGCTTCCGCTCCTCGGTCACTTTTTCCAATTTCTCCATTAGTTTCGTCATTTGGATTCTGCGGAAATTAGGAAA</canonical>
            <polymorphic>ATAGTATTTCTTTTGATTGATTGTTTCTCCATCAGAAGTCTCCTGAAGACGAATGTTCAGATTATTATAGTCTAATTGTTTGGAAGATGTGTATGTATAAAAGACAGGAATTCTTTATAAATTACTTTTTGTTAACCGGAAGTCTCAAATATTACTTTCAAGAACTTAATGATCCTAGAGCATTGTTTGAATTGAGAAAGGCTACATTTTGGGGGATTGTTTAGGAGGTAAGACTAGAATGCTATCTTTGTGACCCCTTAGCTCGGCTCAAAATGAAAATTCCTGTTTGATCTAAATACCAAAATGTAGAACTTGAAAAGGCCTACATCATGATATATAACTCGGCTATGTTTGAATTAGAAGTTTTGAACCACACAGTCAACGAAAAGTAGTAGGCGCTGTTCTAGCCAATATTGCAACGGGTCTGCTTTGACTAACTTCTAAACGGGGTTAGAATATAATCTAGTTTTGCACTTTGCTTTTGAATTCATTTTGTACAWTTTCATAGGGCCTTCAAAATGATATCTAATTCAATTATACTTGAGCCCCGAAATACCGTCGGCGCTACACGGTCGGATTTTGCTGTTTAGGCTGTTTTAGGTCCTCTGGCACCTAAATCAACTTTCCAATCTAATAAAATTATATATCACTTTGTAGATATTTTTAAGTTCTACATTTTGCTTTTTTATTCAAGCTGAAATTTTAATTTTGAGACAAGTTATGCGCCTGACAAGAACGCACATGAGTTTCGGTTGAAATCTTATTTTATTTTCATTTTCCGAATCAGAAAGTTATAACAATCAATAAAAATGTTTAAATTTTTTTCTGAGAAGTTTCCAGATTATCAGGCATCGTCCTCCCCATCTGAATCGTCTTCCATTGTGTTGCCTTCTTCAGAATACAAATGCAAAAGAGTTCTTTCTTTTTGCTTCCGCTCCTCGGTCACTTTTTCCAATTTCTCCATTAGTTTCGTCATTTGGATTCTGCGGAAATTAGGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTTTAGGAGGTAAGACTAGAATG</pcr_primer_p1>
		<pcr_primer_p2>GTATTTCGGGGCTCAAGTAT</pcr_primer_p2>
		<pcr_amplicon_size>340</pcr_amplicon_size>
		<canonical_amplicon>TTGTTTAGGAGGTAAGACTAGAATGCTATCTTTGTGACCCCTTAGCTCGGCTCAAAATGAAAATTCCTGTTTGATCTAAATACCAAAATGTAGAACTTGAAAAGGCCTACATCATGATATATAACTCGGCTATGTTTGAATTAGAAGTTTTGAACCACACAGTCAACGAAAAGTAGTAGGCGCTGTTCTAGCCAATATTGCAACGGGTCTGCTTTGACTAACTTCTAAACGGGGTTAGAATATAATCTAGTTTTGCACTTTGCTTTTGAATTCATTTTGTACATTTTCATAGGGCCTTCAAAATGATATCTAATTCAATTATACTTGAGCCCCGAAATAC</canonical_amplicon>
		<polymorphic_amplicon>TTGTTTAGGAGGTAAGACTAGAATGCTATCTTTGTGACCCCTTAGCTCGGCTCAAAATGAAAATTCCTGTTTGATCTAAATACCAAAATGTAGAACTTGAAAAGGCCTACATCATGATATATAACTCGGCTATGTTTGAATTAGAAGTTTTGAACCACACAGTCAACGAAAAGTAGTAGGCGCTGTTCTAGCCAATATTGCAACGGGTCTGCTTTGACTAACTTCTAAACGGGGTTAGAATATAATCTAGTTTTGCACTTTGCTTTTGAATTCATTTTGTACAWTTTCATAGGGCCTTCAAAATGATATCTAATTCAATTATACTTGAGCCCCGAAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17196</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>34433</contig_pos>
        <strand></strand>
        <context>GAATATAATC[T/A]AGTTTTGCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTGCAACGGGTCTGCTTTGACTAACTTCTAAACGGGGTTAGAATATAATC</left_flank>
        <right_flank>AGTTTTGCACTTTGCTTTTGAATTCATTTTGTACATTTTCATAGGGCCTT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAACCTAATATTTCACCTAATTCATTTATTTTGAAATAGTATTTCTTTTGATTGATTGTTTCTCCATCAGAAGTCTCCTGAAGACGAATGTTCAGATTATTATAGTCTAATTGTTTGGAAGATGTGTATGTATAAAAGACAGGAATTCTTTATAAATTACTTTTTGTTAACCGGAAGTCTCAAATATTACTTTCAAGAACTTAATGATCCTAGAGCATTGTTTGAATTGAGAAAGGCTACATTTTGGGGGATTGTTTAGGAGGTAAGACTAGAATGCTATCTTTGTGACCCCTTAGCTCGGCTCAAAATGAAAATTCCTGTTTGATCTAAATACCAAAATGTAGAACTTGAAAAGGCCTACATCATGATATATAACTCGGCTATGTTTGAATTAGAAGTTTTGAACCACACAGTCAACGAAAAGTAGTAGGCGCTGTTCTAGCCAATATTGCAACGGGTCTGCTTTGACTAACTTCTAAACGGGGTTAGAATATAATCTAGTTTTGCACTTTGCTTTTGAATTCATTTTGTACATTTTCATAGGGCCTTCAAAATGATATCTAATTCAATTATACTTGAGCCCCGAAATACCGTCGGCGCTACACGGTCGGATTTTGCTGTTTAGGCTGTTTTAGGTCCTCTGGCACCTAAATCAACTTTCCAATCTAATAAAATTATATATCACTTTGTAGATATTTTTAAGTTCTACATTTTGCTTTTTTATTCAAGCTGAAATTTTAATTTTGAGACAAGTTATGCGCCTGACAAGAACGCACATGAGTTTCGGTTGAAATCTTATTTTATTTTCATTTTCCGAATCAGAAAGTTATAACAATCAATAAAAATGTTTAAATTTTTTTCTGAGAAGTTTCCAGATTATCAGGCATCGTCCTCCCCATCTGAATCGTCTTCCATTGTGTTGCCTTCTTCAGAATACAAATGCAAAAGAGTTCTTTCTTTTTGCTTCCGCTCCTCGGTCACTTTTTCCAATTTCTCCAT</canonical>
            <polymorphic>CCAACCTAATATTTCACCTAATTCATTTATTTTGAAATAGTATTTCTTTTGATTGATTGTTTCTCCATCAGAAGTCTCCTGAAGACGAATGTTCAGATTATTATAGTCTAATTGTTTGGAAGATGTGTATGTATAAAAGACAGGAATTCTTTATAAATTACTTTTTGTTAACCGGAAGTCTCAAATATTACTTTCAAGAACTTAATGATCCTAGAGCATTGTTTGAATTGAGAAAGGCTACATTTTGGGGGATTGTTTAGGAGGTAAGACTAGAATGCTATCTTTGTGACCCCTTAGCTCGGCTCAAAATGAAAATTCCTGTTTGATCTAAATACCAAAATGTAGAACTTGAAAAGGCCTACATCATGATATATAACTCGGCTATGTTTGAATTAGAAGTTTTGAACCACACAGTCAACGAAAAGTAGTAGGCGCTGTTCTAGCCAATATTGCAACGGGTCTGCTTTGACTAACTTCTAAACGGGGTTAGAATATAATCWAGTTTTGCACTTTGCTTTTGAATTCATTTTGTACATTTTCATAGGGCCTTCAAAATGATATCTAATTCAATTATACTTGAGCCCCGAAATACCGTCGGCGCTACACGGTCGGATTTTGCTGTTTAGGCTGTTTTAGGTCCTCTGGCACCTAAATCAACTTTCCAATCTAATAAAATTATATATCACTTTGTAGATATTTTTAAGTTCTACATTTTGCTTTTTTATTCAAGCTGAAATTTTAATTTTGAGACAAGTTATGCGCCTGACAAGAACGCACATGAGTTTCGGTTGAAATCTTATTTTATTTTCATTTTCCGAATCAGAAAGTTATAACAATCAATAAAAATGTTTAAATTTTTTTCTGAGAAGTTTCCAGATTATCAGGCATCGTCCTCCCCATCTGAATCGTCTTCCATTGTGTTGCCTTCTTCAGAATACAAATGCAAAAGAGTTCTTTCTTTTTGCTTCCGCTCCTCGGTCACTTTTTCCAATTTCTCCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 211 170 59 59</canonical_bands>
                <polymorphic_bands>560 211 170 59</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTAGAATGCTATCTTTGTGACC</pcr_primer_p1>
		<pcr_primer_p2>ATATCATTTTGAAGGCCCTAT</pcr_primer_p2>
		<pcr_amplicon_size>293</pcr_amplicon_size>
		<canonical_amplicon>ACTAGAATGCTATCTTTGTGACCCCTTAGCTCGGCTCAAAATGAAAATTCCTGTTTGATCTAAATACCAAAATGTAGAACTTGAAAAGGCCTACATCATGATATATAACTCGGCTATGTTTGAATTAGAAGTTTTGAACCACACAGTCAACGAAAAGTAGTAGGCGCTGTTCTAGCCAATATTGCAACGGGTCTGCTTTGACTAACTTCTAAACGGGGTTAGAATATAATCTAGTTTTGCACTTTGCTTTTGAATTCATTTTGTACATTTTCATAGGGCCTTCAAAATGATAT</canonical_amplicon>
		<polymorphic_amplicon>ACTAGAATGCTATCTTTGTGACCCCTTAGCTCGGCTCAAAATGAAAATTCCTGTTTGATCTAAATACCAAAATGTAGAACTTGAAAAGGCCTACATCATGATATATAACTCGGCTATGTTTGAATTAGAAGTTTTGAACCACACAGTCAACGAAAAGTAGTAGGCGCTGTTCTAGCCAATATTGCAACGGGTCTGCTTTGACTAACTTCTAAACGGGGTTAGAATATAATCWAGTTTTGCACTTTGCTTTTGAATTCATTTTGTACATTTTCATAGGGCCTTCAAAATGATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17197</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>34401</contig_pos>
        <strand></strand>
        <context>GGTCTGCTTT[G/A]ACTAACTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACGAAAAGTAGTAGGCGCTGTTCTAGCCAATATTGCAACGGGTCTGCTTT</left_flank>
        <right_flank>ACTAACTTCTAAACGGGGTTAGAATATAATCTAGTTTTGCACTTTGCTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTATTGAAAAAGTGACAAAGACTTTCCCGCCAACCTAATATTTCACCTAATTCATTTATTTTGAAATAGTATTTCTTTTGATTGATTGTTTCTCCATCAGAAGTCTCCTGAAGACGAATGTTCAGATTATTATAGTCTAATTGTTTGGAAGATGTGTATGTATAAAAGACAGGAATTCTTTATAAATTACTTTTTGTTAACCGGAAGTCTCAAATATTACTTTCAAGAACTTAATGATCCTAGAGCATTGTTTGAATTGAGAAAGGCTACATTTTGGGGGATTGTTTAGGAGGTAAGACTAGAATGCTATCTTTGTGACCCCTTAGCTCGGCTCAAAATGAAAATTCCTGTTTGATCTAAATACCAAAATGTAGAACTTGAAAAGGCCTACATCATGATATATAACTCGGCTATGTTTGAATTAGAAGTTTTGAACCACACAGTCAACGAAAAGTAGTAGGCGCTGTTCTAGCCAATATTGCAACGGGTCTGCTTTGACTAACTTCTAAACGGGGTTAGAATATAATCTAGTTTTGCACTTTGCTTTTGAATTCATTTTGTACATTTTCATAGGGCCTTCAAAATGATATCTAATTCAATTATACTTGAGCCCCGAAATACCGTCGGCGCTACACGGTCGGATTTTGCTGTTTAGGCTGTTTTAGGTCCTCTGGCACCTAAATCAACTTTCCAATCTAATAAAATTATATATCACTTTGTAGATATTTTTAAGTTCTACATTTTGCTTTTTTATTCAAGCTGAAATTTTAATTTTGAGACAAGTTATGCGCCTGACAAGAACGCACATGAGTTTCGGTTGAAATCTTATTTTATTTTCATTTTCCGAATCAGAAAGTTATAACAATCAATAAAAATGTTTAAATTTTTTTCTGAGAAGTTTCCAGATTATCAGGCATCGTCCTCCCCATCTGAATCGTCTTCCATTGTGTTGCCTTCTTCAGAATACAAATGCAAAAGAGTTCTTTCTTTTTGCTTC</canonical>
            <polymorphic>AAACTATTGAAAAAGTGACAAAGACTTTCCCGCCAACCTAATATTTCACCTAATTCATTTATTTTGAAATAGTATTTCTTTTGATTGATTGTTTCTCCATCAGAAGTCTCCTGAAGACGAATGTTCAGATTATTATAGTCTAATTGTTTGGAAGATGTGTATGTATAAAAGACAGGAATTCTTTATAAATTACTTTTTGTTAACCGGAAGTCTCAAATATTACTTTCAAGAACTTAATGATCCTAGAGCATTGTTTGAATTGAGAAAGGCTACATTTTGGGGGATTGTTTAGGAGGTAAGACTAGAATGCTATCTTTGTGACCCCTTAGCTCGGCTCAAAATGAAAATTCCTGTTTGATCTAAATACCAAAATGTAGAACTTGAAAAGGCCTACATCATGATATATAACTCGGCTATGTTTGAATTAGAAGTTTTGAACCACACAGTCAACGAAAAGTAGTAGGCGCTGTTCTAGCCAATATTGCAACGGGTCTGCTTTRACTAACTTCTAAACGGGGTTAGAATATAATCTAGTTTTGCACTTTGCTTTTGAATTCATTTTGTACATTTTCATAGGGCCTTCAAAATGATATCTAATTCAATTATACTTGAGCCCCGAAATACCGTCGGCGCTACACGGTCGGATTTTGCTGTTTAGGCTGTTTTAGGTCCTCTGGCACCTAAATCAACTTTCCAATCTAATAAAATTATATATCACTTTGTAGATATTTTTAAGTTCTACATTTTGCTTTTTTATTCAAGCTGAAATTTTAATTTTGAGACAAGTTATGCGCCTGACAAGAACGCACATGAGTTTCGGTTGAAATCTTATTTTATTTTCATTTTCCGAATCAGAAAGTTATAACAATCAATAAAAATGTTTAAATTTTTTTCTGAGAAGTTTCCAGATTATCAGGCATCGTCCTCCCCATCTGAATCGTCTTCCATTGTGTTGCCTTCTTCAGAATACAAATGCAAAAGAGTTCTTTCTTTTTGCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTAGAATGCTATCTTTGTGACC</pcr_primer_p1>
		<pcr_primer_p2>CAAAAGCAAAGTGCAAAACT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACTAGAATGCTATCTTTGTGACCCCTTAGCTCGGCTCAAAATGAAAATTCCTGTTTGATCTAAATACCAAAATGTAGAACTTGAAAAGGCCTACATCATGATATATAACTCGGCTATGTTTGAATTAGAAGTTTTGAACCACACAGTCAACGAAAAGTAGTAGGCGCTGTTCTAGCCAATATTGCAACGGGTCTGCTTTGACTAACTTCTAAACGGGGTTAGAATATAATCTAGTTTTGCACTTTGCTTTTG</canonical_amplicon>
		<polymorphic_amplicon>ACTAGAATGCTATCTTTGTGACCCCTTAGCTCGGCTCAAAATGAAAATTCCTGTTTGATCTAAATACCAAAATGTAGAACTTGAAAAGGCCTACATCATGATATATAACTCGGCTATGTTTGAATTAGAAGTTTTGAACCACACAGTCAACGAAAAGTAGTAGGCGCTGTTCTAGCCAATATTGCAACGGGTCTGCTTTRACTAACTTCTAAACGGGGTTAGAATATAATCTAGTTTTGCACTTTGCTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17198</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>34370</contig_pos>
        <strand></strand>
        <context>agtaggcGCT[G/T]TTCTAGCCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTGAATTAGAAGTTTTGAACCACACAGTCAACGAAAAGTAGTAGGCGCT</left_flank>
        <right_flank>TTCTAGCCAATATTGCAACGGGTCTGCTTTGACTAACTTCTAAACGGGGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTATTCGGTTATTTTTTCTTTGAGAAATAAACTATTGAAAAAGTGACAAAGACTTTCCCGCCAACCTAATATTTCACCTAATTCATTTATTTTGAAATAGTATTTCTTTTGATTGATTGTTTCTCCATCAGAAGTCTCCTGAAGACGAATGTTCAGATTATTATAGTCTAATTGTTTGGAAGATGTGTATGTATAAAAGACAGGAATTCTTTATAAATTACTTTTTGTTAACCGGAAGTCTCAAATATTACTTTCAAGAACTTAATGATCCTAGAGCATTGTTTGAATTGAGAAAGGCTACATTTTGGGGGATTGTTTAGGAGGTAAGACTAGAATGCTATCTTTGTGACCCCTTAGCTCGGCTCAAAATGAAAATTCCTGTTTGATCTAAATACCAAAATGTAGAACTTGAAAAGGCCTACATCATGATATATAACTCGGCTATGTTTGAATTAGAAGTTTTGAACCACACAGTCAACGAAAAGTAGTAGGCGCTGTTCTAGCCAATATTGCAACGGGTCTGCTTTGACTAACTTCTAAACGGGGTTAGAATATAATCTAGTTTTGCACTTTGCTTTTGAATTCATTTTGTACATTTTCATAGGGCCTTCAAAATGATATCTAATTCAATTATACTTGAGCCCCGAAATACCGTCGGCGCTACACGGTCGGATTTTGCTGTTTAGGCTGTTTTAGGTCCTCTGGCACCTAAATCAACTTTCCAATCTAATAAAATTATATATCACTTTGTAGATATTTTTAAGTTCTACATTTTGCTTTTTTATTCAAGCTGAAATTTTAATTTTGAGACAAGTTATGCGCCTGACAAGAACGCACATGAGTTTCGGTTGAAATCTTATTTTATTTTCATTTTCCGAATCAGAAAGTTATAACAATCAATAAAAATGTTTAAATTTTTTTCTGAGAAGTTTCCAGATTATCAGGCATCGTCCTCCCCATCTGAATCGTCTTCCATTGTGTTGCCTTCTTCAGAATA</canonical>
            <polymorphic>TAATTATTCGGTTATTTTTTCTTTGAGAAATAAACTATTGAAAAAGTGACAAAGACTTTCCCGCCAACCTAATATTTCACCTAATTCATTTATTTTGAAATAGTATTTCTTTTGATTGATTGTTTCTCCATCAGAAGTCTCCTGAAGACGAATGTTCAGATTATTATAGTCTAATTGTTTGGAAGATGTGTATGTATAAAAGACAGGAATTCTTTATAAATTACTTTTTGTTAACCGGAAGTCTCAAATATTACTTTCAAGAACTTAATGATCCTAGAGCATTGTTTGAATTGAGAAAGGCTACATTTTGGGGGATTGTTTAGGAGGTAAGACTAGAATGCTATCTTTGTGACCCCTTAGCTCGGCTCAAAATGAAAATTCCTGTTTGATCTAAATACCAAAATGTAGAACTTGAAAAGGCCTACATCATGATATATAACTCGGCTATGTTTGAATTAGAAGTTTTGAACCACACAGTCAACGAAAAGTAGTAGGCGCTKTTCTAGCCAATATTGCAACGGGTCTGCTTTGACTAACTTCTAAACGGGGTTAGAATATAATCTAGTTTTGCACTTTGCTTTTGAATTCATTTTGTACATTTTCATAGGGCCTTCAAAATGATATCTAATTCAATTATACTTGAGCCCCGAAATACCGTCGGCGCTACACGGTCGGATTTTGCTGTTTAGGCTGTTTTAGGTCCTCTGGCACCTAAATCAACTTTCCAATCTAATAAAATTATATATCACTTTGTAGATATTTTTAAGTTCTACATTTTGCTTTTTTATTCAAGCTGAAATTTTAATTTTGAGACAAGTTATGCGCCTGACAAGAACGCACATGAGTTTCGGTTGAAATCTTATTTTATTTTCATTTTCCGAATCAGAAAGTTATAACAATCAATAAAAATGTTTAAATTTTTTTCTGAGAAGTTTCCAGATTATCAGGCATCGTCCTCCCCATCTGAATCGTCTTCCATTGTGTTGCCTTCTTCAGAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGATTGTTTAGGAGGTAAGAC</pcr_primer_p1>
		<pcr_primer_p2>TCTAACCCCGTTTAGAAGTTAGT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GGGATTGTTTAGGAGGTAAGACTAGAATGCTATCTTTGTGACCCCTTAGCTCGGCTCAAAATGAAAATTCCTGTTTGATCTAAATACCAAAATGTAGAACTTGAAAAGGCCTACATCATGATATATAACTCGGCTATGTTTGAATTAGAAGTTTTGAACCACACAGTCAACGAAAAGTAGTAGGCGCTGTTCTAGCCAATATTGCAACGGGTCTGCTTTGACTAACTTCTAAACGGGGTTAGA</canonical_amplicon>
		<polymorphic_amplicon>GGGATTGTTTAGGAGGTAAGACTAGAATGCTATCTTTGTGACCCCTTAGCTCGGCTCAAAATGAAAATTCCTGTTTGATCTAAATACCAAAATGTAGAACTTGAAAAGGCCTACATCATGATATATAACTCGGCTATGTTTGAATTAGAAGTTTTGAACCACACAGTCAACGAAAAGTAGTAGGCGCTKTTCTAGCCAATATTGCAACGGGTCTGCTTTGACTAACTTCTAAACGGGGTTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17199</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>78492</contig_pos>
        <strand></strand>
        <context>cttgtcagtt[A/T]gatatttagc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGCGTTGGAGCCCCTTCTGTCCAGGCGGTTTTTCTGAAACTTGTCAGTT</left_flank>
        <right_flank>GATATTTAGCCAAATTAAGTATCATTTTGTAGCTCTCGCCGAGTTCTACA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACGATCCTGCTTTTAGCGCCAAGGTCAATTTACAAATTGATTCAGTGGTGAGGTTTGTGATTGGTCTAGTCATAAAATTTCGAGGGGATGAAAAATCTTGATTTAGTGTAAAAAGACCAAAAAAGTACAGTAACCTCTAGTCGATAGAATTTGTCATTTAGATTTTTACATGTTTCTTGGGATCGTTTTCAAGCGATTTTTAATCTTTTTGTATGAATTGTGACTGTGTAGCTTAGGTAGAAGGTAGAAGAATTTGAACACCGTAAAATCTGTGATAGAAGGGCTCCCACAATTTTAATTCCGAGCCAATTTATCTCGGTTCTTGTCAAGGATATCAAAAAAAAAACTCCAACTGATAAAATGTTAATGATAAAATGAAAAACATTTTATCAGTTGATATATTTTTGATATATCTGATAGGAAGCGAGATAATTGAGCGCAAATTTGATAGCGTTGGAGCCCCTTCTGTCCAGGCGGTTTTTCTGAAACTTGTCAGTTAGATATTTAGCCAAATTAAGTATCATTTTGTAGCTCTCGCCGAGTTCTACATGTTACTTCTTCAATCAAACTGAATTTCCAATTTTAAATCGAATTATGGGTTGAACTAGTTAACTTTCTGGATTGCCCCCCTTGGACAATCCGGGATCGATGTTCGATAAATTTTAAACGGACTTTCATAGGCCTCTATTCCTTGAATTTCAGACCGTTTTTAAGTGATTTTAAGTCTTTCTTTATACTTTGTTGACTACTTCTCAGTAAATTAGATTCCGATTGAATTTCGCTTTTATTTTTCATGATTTTTAGTTCAAAGGACCCCACACTGTCAACTTTGAGCCTATATATCTCGCTCCCTGTGAAAGATATCCAGAATTTGTCAACTTACAAAATACTTTTGATAAAATGATAAATAATTTATCAGGTGACCACTTCTTTGACAGGAACCAAGATAAATTGGCTCGGTTTTTAGCTTGTAACTTTGTTCATTTACAAGATACTGTA</canonical>
            <polymorphic>TACGATCCTGCTTTTAGCGCCAAGGTCAATTTACAAATTGATTCAGTGGTGAGGTTTGTGATTGGTCTAGTCATAAAATTTCGAGGGGATGAAAAATCTTGATTTAGTGTAAAAAGACCAAAAAAGTACAGTAACCTCTAGTCGATAGAATTTGTCATTTAGATTTTTACATGTTTCTTGGGATCGTTTTCAAGCGATTTTTAATCTTTTTGTATGAATTGTGACTGTGTAGCTTAGGTAGAAGGTAGAAGAATTTGAACACCGTAAAATCTGTGATAGAAGGGCTCCCACAATTTTAATTCCGAGCCAATTTATCTCGGTTCTTGTCAAGGATATCAAAAAAAAAACTCCAACTGATAAAATGTTAATGATAAAATGAAAAACATTTTATCAGTTGATATATTTTTGATATATCTGATAGGAAGCGAGATAATTGAGCGCAAATTTGATAGCGTTGGAGCCCCTTCTGTCCAGGCGGTTTTTCTGAAACTTGTCAGTTWGATATTTAGCCAAATTAAGTATCATTTTGTAGCTCTCGCCGAGTTCTACATGTTACTTCTTCAATCAAACTGAATTTCCAATTTTAAATCGAATTATGGGTTGAACTAGTTAACTTTCTGGATTGCCCCCCTTGGACAATCCGGGATCGATGTTCGATAAATTTTAAACGGACTTTCATAGGCCTCTATTCCTTGAATTTCAGACCGTTTTTAAGTGATTTTAAGTCTTTCTTTATACTTTGTTGACTACTTCTCAGTAAATTAGATTCCGATTGAATTTCGCTTTTATTTTTCATGATTTTTAGTTCAAAGGACCCCACACTGTCAACTTTGAGCCTATATATCTCGCTCCCTGTGAAAGATATCCAGAATTTGTCAACTTACAAAATACTTTTGATAAAATGATAAATAATTTATCAGGTGACCACTTCTTTGACAGGAACCAAGATAAATTGGCTCGGTTTTTAGCTTGTAACTTTGTTCATTTACAAGATACTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTGTGTAGCTTAGGTAGAAGGTA</pcr_primer_p1>
		<pcr_primer_p2>AAATTTATCGAACATCGATCC</pcr_primer_p2>
		<pcr_amplicon_size>442</pcr_amplicon_size>
		<canonical_amplicon>GACTGTGTAGCTTAGGTAGAAGGTAGAAGAATTTGAACACCGTAAAATCTGTGATAGAAGGGCTCCCACAATTTTAATTCCGAGCCAATTTATCTCGGTTCTTGTCAAGGATATCAAAAAAAAAACTCCAACTGATAAAATGTTAATGATAAAATGAAAAACATTTTATCAGTTGATATATTTTTGATATATCTGATAGGAAGCGAGATAATTGAGCGCAAATTTGATAGCGTTGGAGCCCCTTCTGTCCAGGCGGTTTTTCTGAAACTTGTCAGTTAGATATTTAGCCAAATTAAGTATCATTTTGTAGCTCTCGCCGAGTTCTACATGTTACTTCTTCAATCAAACTGAATTTCCAATTTTAAATCGAATTATGGGTTGAACTAGTTAACTTTCTGGATTGCCCCCCTTGGACAATCCGGGATCGATGTTCGATAAATTT</canonical_amplicon>
		<polymorphic_amplicon>GACTGTGTAGCTTAGGTAGAAGGTAGAAGAATTTGAACACCGTAAAATCTGTGATAGAAGGGCTCCCACAATTTTAATTCCGAGCCAATTTATCTCGGTTCTTGTCAAGGATATCAAAAAAAAAACTCCAACTGATAAAATGTTAATGATAAAATGAAAAACATTTTATCAGTTGATATATTTTTGATATATCTGATAGGAAGCGAGATAATTGAGCGCAAATTTGATAGCGTTGGAGCCCCTTCTGTCCAGGCGGTTTTTCTGAAACTTGTCAGTTWGATATTTAGCCAAATTAAGTATCATTTTGTAGCTCTCGCCGAGTTCTACATGTTACTTCTTCAATCAAACTGAATTTCCAATTTTAAATCGAATTATGGGTTGAACTAGTTAACTTTCTGGATTGCCCCCCTTGGACAATCCGGGATCGATGTTCGATAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17200</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>78618</contig_pos>
        <strand></strand>
        <context>TTCTGGATTG[C/G]CCCYCTTGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCCAATTTTAAATCGAATTATGGGTTGAACTAGTTAACTTTCTGGATTG</left_flank>
        <right_flank>CCCCCTTGGACAATCCGGGATCGATGTTCGATAAATTTTAAACGGACTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACAGTAACCTCTAGTCGATAGAATTTGTCATTTAGATTTTTACATGTTTCTTGGGATCGTTTTCAAGCGATTTTTAATCTTTTTGTATGAATTGTGACTGTGTAGCTTAGGTAGAAGGTAGAAGAATTTGAACACCGTAAAATCTGTGATAGAAGGGCTCCCACAATTTTAATTCCGAGCCAATTTATCTCGGTTCTTGTCAAGGATATCAAAAAAAAAACTCCAACTGATAAAATGTTAATGATAAAATGAAAAACATTTTATCAGTTGATATATTTTTGATATATCTGATAGGAAGCGAGATAATTGAGCGCAAATTTGATAGCGTTGGAGCCCCTTCTGTCCAGGCGGTTTTTCTGAAACTTGTCAGTTAGATATTTAGCCAAATTAAGTATCATTTTGTAGCTCTCGCCGAGTTCTACATGTTACTTCTTCAATCAAACTGAATTTCCAATTTTAAATCGAATTATGGGTTGAACTAGTTAACTTTCTGGATTGCCCCCCTTGGACAATCCGGGATCGATGTTCGATAAATTTTAAACGGACTTTCATAGGCCTCTATTCCTTGAATTTCAGACCGTTTTTAAGTGATTTTAAGTCTTTCTTTATACTTTGTTGACTACTTCTCAGTAAATTAGATTCCGATTGAATTTCGCTTTTATTTTTCATGATTTTTAGTTCAAAGGACCCCACACTGTCAACTTTGAGCCTATATATCTCGCTCCCTGTGAAAGATATCCAGAATTTGTCAACTTACAAAATACTTTTGATAAAATGATAAATAATTTATCAGGTGACCACTTCTTTGACAGGAACCAAGATAAATTGGCTCGGTTTTTAGCTTGTAACTTTGTTCATTTACAAGATACTGTATCCCAAATAATATCATTTTGTAGCTATTGAACTCTTCTATCACTTCCAATTTAGTAAATCTAGAAATATTCATCCTGAAGAAAGTTATGATAGGGACCGTTTTTCAAGTATGGAAAATTAGCTGAT</canonical>
            <polymorphic>TACAGTAACCTCTAGTCGATAGAATTTGTCATTTAGATTTTTACATGTTTCTTGGGATCGTTTTCAAGCGATTTTTAATCTTTTTGTATGAATTGTGACTGTGTAGCTTAGGTAGAAGGTAGAAGAATTTGAACACCGTAAAATCTGTGATAGAAGGGCTCCCACAATTTTAATTCCGAGCCAATTTATCTCGGTTCTTGTCAAGGATATCAAAAAAAAAACTCCAACTGATAAAATGTTAATGATAAAATGAAAAACATTTTATCAGTTGATATATTTTTGATATATCTGATAGGAAGCGAGATAATTGAGCGCAAATTTGATAGCGTTGGAGCCCCTTCTGTCCAGGCGGTTTTTCTGAAACTTGTCAGTTAGATATTTAGCCAAATTAAGTATCATTTTGTAGCTCTCGCCGAGTTCTACATGTTACTTCTTCAATCAAACTGAATTTCCAATTTTAAATCGAATTATGGGTTGAACTAGTTAACTTTCTGGATTGSCCCCCTTGGACAATCCGGGATCGATGTTCGATAAATTTTAAACGGACTTTCATAGGCCTCTATTCCTTGAATTTCAGACCGTTTTTAAGTGATTTTAAGTCTTTCTTTATACTTTGTTGACTACTTCTCAGTAAATTAGATTCCGATTGAATTTCGCTTTTATTTTTCATGATTTTTAGTTCAAAGGACCCCACACTGTCAACTTTGAGCCTATATATCTCGCTCCCTGTGAAAGATATCCAGAATTTGTCAACTTACAAAATACTTTTGATAAAATGATAAATAATTTATCAGGTGACCACTTCTTTGACAGGAACCAAGATAAATTGGCTCGGTTTTTAGCTTGTAACTTTGTTCATTTACAAGATACTGTATCCCAAATAATATCATTTTGTAGCTATTGAACTCTTCTATCACTTCCAATTTAGTAAATCTAGAAATATTCATCCTGAAGAAAGTTATGATAGGGACCGTTTTTCAAGTATGGAAAATTAGCTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTGTGTAGCTTAGGTAGAAGGTA</pcr_primer_p1>
		<pcr_primer_p2>CCTATGAAAGTCCGTTTAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>460</pcr_amplicon_size>
		<canonical_amplicon>GACTGTGTAGCTTAGGTAGAAGGTAGAAGAATTTGAACACCGTAAAATCTGTGATAGAAGGGCTCCCACAATTTTAATTCCGAGCCAATTTATCTCGGTTCTTGTCAAGGATATCAAAAAAAAAACTCCAACTGATAAAATGTTAATGATAAAATGAAAAACATTTTATCAGTTGATATATTTTTGATATATCTGATAGGAAGCGAGATAATTGAGCGCAAATTTGATAGCGTTGGAGCCCCTTCTGTCCAGGCGGTTTTTCTGAAACTTGTCAGTTAGATATTTAGCCAAATTAAGTATCATTTTGTAGCTCTCGCCGAGTTCTACATGTTACTTCTTCAATCAAACTGAATTTCCAATTTTAAATCGAATTATGGGTTGAACTAGTTAACTTTCTGGATTGCCCCCCTTGGACAATCCGGGATCGATGTTCGATAAATTTTAAACGGACTTTCATAGG</canonical_amplicon>
		<polymorphic_amplicon>GACTGTGTAGCTTAGGTAGAAGGTAGAAGAATTTGAACACCGTAAAATCTGTGATAGAAGGGCTCCCACAATTTTAATTCCGAGCCAATTTATCTCGGTTCTTGTCAAGGATATCAAAAAAAAAACTCCAACTGATAAAATGTTAATGATAAAATGAAAAACATTTTATCAGTTGATATATTTTTGATATATCTGATAGGAAGCGAGATAATTGAGCGCAAATTTGATAGCGTTGGAGCCCCTTCTGTCCAGGCGGTTTTTCTGAAACTTGTCAGTTAGATATTTAGCCAAATTAAGTATCATTTTGTAGCTCTCGCCGAGTTCTACATGTTACTTCTTCAATCAAACTGAATTTCCAATTTTAAATCGAATTATGGGTTGAACTAGTTAACTTTCTGGATTGSCCCCCTTGGACAATCCGGGATCGATGTTCGATAAATTTTAAACGGACTTTCATAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17201</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>78622</contig_pos>
        <strand></strand>
        <context>GGATTGSCCC[C/T]CTTGGACAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTTAAATCGAATTATGGGTTGAACTAGTTAACTTTCTGGATTGCCCC</left_flank>
        <right_flank>CTTGGACAATCCGGGATCGATGTTCGATAAATTTTAAACGGACTTTCATA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAACCTCTAGTCGATAGAATTTGTCATTTAGATTTTTACATGTTTCTTGGGATCGTTTTCAAGCGATTTTTAATCTTTTTGTATGAATTGTGACTGTGTAGCTTAGGTAGAAGGTAGAAGAATTTGAACACCGTAAAATCTGTGATAGAAGGGCTCCCACAATTTTAATTCCGAGCCAATTTATCTCGGTTCTTGTCAAGGATATCAAAAAAAAAACTCCAACTGATAAAATGTTAATGATAAAATGAAAAACATTTTATCAGTTGATATATTTTTGATATATCTGATAGGAAGCGAGATAATTGAGCGCAAATTTGATAGCGTTGGAGCCCCTTCTGTCCAGGCGGTTTTTCTGAAACTTGTCAGTTAGATATTTAGCCAAATTAAGTATCATTTTGTAGCTCTCGCCGAGTTCTACATGTTACTTCTTCAATCAAACTGAATTTCCAATTTTAAATCGAATTATGGGTTGAACTAGTTAACTTTCTGGATTGCCCCCCTTGGACAATCCGGGATCGATGTTCGATAAATTTTAAACGGACTTTCATAGGCCTCTATTCCTTGAATTTCAGACCGTTTTTAAGTGATTTTAAGTCTTTCTTTATACTTTGTTGACTACTTCTCAGTAAATTAGATTCCGATTGAATTTCGCTTTTATTTTTCATGATTTTTAGTTCAAAGGACCCCACACTGTCAACTTTGAGCCTATATATCTCGCTCCCTGTGAAAGATATCCAGAATTTGTCAACTTACAAAATACTTTTGATAAAATGATAAATAATTTATCAGGTGACCACTTCTTTGACAGGAACCAAGATAAATTGGCTCGGTTTTTAGCTTGTAACTTTGTTCATTTACAAGATACTGTATCCCAAATAATATCATTTTGTAGCTATTGAACTCTTCTATCACTTCCAATTTAGTAAATCTAGAAATATTCATCCTGAAGAAAGTTATGATAGGGACCGTTTTTCAAGTATGGAAAATTAGCTGATTATG</canonical>
            <polymorphic>GTAACCTCTAGTCGATAGAATTTGTCATTTAGATTTTTACATGTTTCTTGGGATCGTTTTCAAGCGATTTTTAATCTTTTTGTATGAATTGTGACTGTGTAGCTTAGGTAGAAGGTAGAAGAATTTGAACACCGTAAAATCTGTGATAGAAGGGCTCCCACAATTTTAATTCCGAGCCAATTTATCTCGGTTCTTGTCAAGGATATCAAAAAAAAAACTCCAACTGATAAAATGTTAATGATAAAATGAAAAACATTTTATCAGTTGATATATTTTTGATATATCTGATAGGAAGCGAGATAATTGAGCGCAAATTTGATAGCGTTGGAGCCCCTTCTGTCCAGGCGGTTTTTCTGAAACTTGTCAGTTAGATATTTAGCCAAATTAAGTATCATTTTGTAGCTCTCGCCGAGTTCTACATGTTACTTCTTCAATCAAACTGAATTTCCAATTTTAAATCGAATTATGGGTTGAACTAGTTAACTTTCTGGATTGCCCCYCTTGGACAATCCGGGATCGATGTTCGATAAATTTTAAACGGACTTTCATAGGCCTCTATTCCTTGAATTTCAGACCGTTTTTAAGTGATTTTAAGTCTTTCTTTATACTTTGTTGACTACTTCTCAGTAAATTAGATTCCGATTGAATTTCGCTTTTATTTTTCATGATTTTTAGTTCAAAGGACCCCACACTGTCAACTTTGAGCCTATATATCTCGCTCCCTGTGAAAGATATCCAGAATTTGTCAACTTACAAAATACTTTTGATAAAATGATAAATAATTTATCAGGTGACCACTTCTTTGACAGGAACCAAGATAAATTGGCTCGGTTTTTAGCTTGTAACTTTGTTCATTTACAAGATACTGTATCCCAAATAATATCATTTTGTAGCTATTGAACTCTTCTATCACTTCCAATTTAGTAAATCTAGAAATATTCATCCTGAAGAAAGTTATGATAGGGACCGTTTTTCAAGTATGGAAAATTAGCTGATTATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTGTGTAGCTTAGGTAGAAGGTA</pcr_primer_p1>
		<pcr_primer_p2>AGGAATAGAGGCCTATGAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>471</pcr_amplicon_size>
		<canonical_amplicon>GACTGTGTAGCTTAGGTAGAAGGTAGAAGAATTTGAACACCGTAAAATCTGTGATAGAAGGGCTCCCACAATTTTAATTCCGAGCCAATTTATCTCGGTTCTTGTCAAGGATATCAAAAAAAAAACTCCAACTGATAAAATGTTAATGATAAAATGAAAAACATTTTATCAGTTGATATATTTTTGATATATCTGATAGGAAGCGAGATAATTGAGCGCAAATTTGATAGCGTTGGAGCCCCTTCTGTCCAGGCGGTTTTTCTGAAACTTGTCAGTTAGATATTTAGCCAAATTAAGTATCATTTTGTAGCTCTCGCCGAGTTCTACATGTTACTTCTTCAATCAAACTGAATTTCCAATTTTAAATCGAATTATGGGTTGAACTAGTTAACTTTCTGGATTGCCCCCCTTGGACAATCCGGGATCGATGTTCGATAAATTTTAAACGGACTTTCATAGGCCTCTATTCCT</canonical_amplicon>
		<polymorphic_amplicon>GACTGTGTAGCTTAGGTAGAAGGTAGAAGAATTTGAACACCGTAAAATCTGTGATAGAAGGGCTCCCACAATTTTAATTCCGAGCCAATTTATCTCGGTTCTTGTCAAGGATATCAAAAAAAAAACTCCAACTGATAAAATGTTAATGATAAAATGAAAAACATTTTATCAGTTGATATATTTTTGATATATCTGATAGGAAGCGAGATAATTGAGCGCAAATTTGATAGCGTTGGAGCCCCTTCTGTCCAGGCGGTTTTTCTGAAACTTGTCAGTTAGATATTTAGCCAAATTAAGTATCATTTTGTAGCTCTCGCCGAGTTCTACATGTTACTTCTTCAATCAAACTGAATTTCCAATTTTAAATCGAATTATGGGTTGAACTAGTTAACTTTCTGGATTGCCCCYCTTGGACAATCCGGGATCGATGTTCGATAAATTTTAAACGGACTTTCATAGGCCTCTATTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17202</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>82720</contig_pos>
        <strand>+</strand>
        <context>ACAATTACCT[C/G]TGGCTATCGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTTTCTCAAAGTCTGCATTTCCGCGTAACGGTGTTTGCACAATTACCT</left_flank>
        <right_flank>TGGCTATCGTACCGATTTTAGCGTTTAAGCAAGCGCGTAGCTCTGTCGGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCAAGGTCTCTTTTACGACCTTGGATAAGGATGAGCAGCAGGTGTCAGTAAAATCGAAAAGTACAGTAATCCGTAGCGGCGCCGAAAAGTGTCAAAAAGTGAACATGCACATCATTTCCTGAAGCCCAAAAATGCCGCCAAAAGGAAACAGAAATAAACAAAAAAGGATGCTTACTTTTTTGCCACTGTCTAGTACTACTATTTTTCGCATTATCACTAATTTTATTCGGGACAGGAGGAAAACTGATAACCAGTGCGGAGTCCTTTTGAAATTTTGCCGCCATGGAAAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACCCAGCCAACCAGTTTTACAACCACCACCCGACTGCTGAAATCATATATCATTTTTGCTCCGGCGCAGTTAACAATTTTAATTTATTTTCATTTTATTGATTTTTTTTTCTCAAAGTCTGCATTTCCGCGTAACGGTGTTTGCACAATTACCTCTGGCTATCGTACCGATTTTAGCGTTTAAGCAAGCGCGTAGCTCTGTCGGTATAGGTGAATGACTCATATGAAGCCGAATAGGACATTTTTTTTTCGAAATTTGAAAAATTCGAAAAATATCGAATTTTGGATTATATATTTTTCACTATTTTTGGTCCCTATTTTCCCTCATCTTCTTCTCTGTATATTTCTTATTCTCCCTCACTTTTCTTCCATTCGTAATCTTAAAATAACATTAGCGCAATTAATTTTTAACGACTACGACGATCATATTTCCTCTTCTTCGCAATATCAATGATAAAATATGTGGTTTGTATGTATCAATAGAGTGTATCAATCAGTATCTAGGTTACTGTAGAGAATTTTATTGGTTACTGTAGAAGCTTTATATCATTATTTTTTTTTGGTTACTGTAGAAGCTTTATATCATTAGTGACCATCAATAAGCTTGTGATAAGGATTAAAGTTTATTGCTCCGGATGTTATGAGAAATTGCTCCG</canonical>
            <polymorphic>CTTCAAGGTCTCTTTTACGACCTTGGATAAGGATGAGCAGCAGGTGTCAGTAAAATCGAAAAGTACAGTAATCCGTAGCGGCGCCGAAAAGTGTCAAAAAGTGAACATGCACATCATTTCCTGAAGCCCAAAAATGCCGCCAAAAGGAAACAGAAATAAACAAAAAAGGATGCTTACTTTTTTGCCACTGTCTAGTACTACTATTTTTCGCATTATCACTAATTTTATTCGGGACAGGAGGAAAACTGATAACCAGTGCGGAGTCCTTTTGAAATTTTGCCGCCATGGAAAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACCCAGCCAACCAGTTTTACAACCACCACCCGACTGCTGAAATCATATATCATTTTTGCTCCGGCGCAGTTAACAATTTTAATTTATTTTCATTTTATTGATTTTTTTTTCTCAAAGTCTGCATTTCCGCGTAACGGTGTTTGCACAATTACCTSTGGCTATCGTACCGATTTTAGCGTTTAAGCAAGCGCGTAGCTCTGTCGGTATAGGTGAATGACTCATATGAAGCCGAATAGGACATTTTTTTTTCGAAATTTGAAAAATTCGAAAAATATCGAATTTTGGATTATATATTTTTCACTATTTTTGGTCCCTATTTTCCCTCATCTTCTTCTCTGTATATTTCTTATTCTCCCTCACTTTTCTTCCATTCGTAATCTTAAAATAACATTAGCGCAATTAATTTTTAACGACTACGACGATCATATTTCCTCTTCTTCGCAATATCAATGATAAAATATGTGGTTTGTATGTATCAATAGAGTGTATCAATCAGTATCTAGGTTACTGTAGAGAATTTTATTGGTTACTGTAGAAGCTTTATATCATTATTTTTTTTTGGTTACTGTAGAAGCTTTATATCATTAGTGACCATCAATAAGCTTGTGATAAGGATTAAAGTTTATTGCTCCGGATGTTATGAGAAATTGCTCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAACCAGTTTTACAACCAC</pcr_primer_p1>
		<pcr_primer_p2>GCTTCATATGAGTCATTCACCTA</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>CCAACCAGTTTTACAACCACCACCCGACTGCTGAAATCATATATCATTTTTGCTCCGGCGCAGTTAACAATTTTAATTTATTTTCATTTTATTGATTTTTTTTTCTCAAAGTCTGCATTTCCGCGTAACGGTGTTTGCACAATTACCTCTGGCTATCGTACCGATTTTAGCGTTTAAGCAAGCGCGTAGCTCTGTCGGTATAGGTGAATGACTCATATGAAGC</canonical_amplicon>
		<polymorphic_amplicon>CCAACCAGTTTTACAACCACCACCCGACTGCTGAAATCATATATCATTTTTGCTCCGGCGCAGTTAACAATTTTAATTTATTTTCATTTTATTGATTTTTTTTTCTCAAAGTCTGCATTTCCGCGTAACGGTGTTTGCACAATTACCTSTGGCTATCGTACCGATTTTAGCGTTTAAGCAAGCGCGTAGCTCTGTCGGTATAGGTGAATGACTCATATGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17203</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>82703</contig_pos>
        <strand>+</strand>
        <context>CGCGTAACGG[C/T]GTTTGCACAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCATTTTATTGATTTTTTTTTCTCAAAGTCTGCATTTCCGCGTAACGG</left_flank>
        <right_flank>GTTTGCACAATTACCTCTGGCTATCGTACCGATTTTAGCGTTTAAGCAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAGAAGACATCATTGCTTCAAGGTCTCTTTTACGACCTTGGATAAGGATGAGCAGCAGGTGTCAGTAAAATCGAAAAGTACAGTAATCCGTAGCGGCGCCGAAAAGTGTCAAAAAGTGAACATGCACATCATTTCCTGAAGCCCAAAAATGCCGCCAAAAGGAAACAGAAATAAACAAAAAAGGATGCTTACTTTTTTGCCACTGTCTAGTACTACTATTTTTCGCATTATCACTAATTTTATTCGGGACAGGAGGAAAACTGATAACCAGTGCGGAGTCCTTTTGAAATTTTGCCGCCATGGAAAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACCCAGCCAACCAGTTTTACAACCACCACCCGACTGCTGAAATCATATATCATTTTTGCTCCGGCGCAGTTAACAATTTTAATTTATTTTCATTTTATTGATTTTTTTTTCTCAAAGTCTGCATTTCCGCGTAACGGTGTTTGCACAATTACCTCTGGCTATCGTACCGATTTTAGCGTTTAAGCAAGCGCGTAGCTCTGTCGGTATAGGTGAATGACTCATATGAAGCCGAATAGGACATTTTTTTTTCGAAATTTGAAAAATTCGAAAAATATCGAATTTTGGATTATATATTTTTCACTATTTTTGGTCCCTATTTTCCCTCATCTTCTTCTCTGTATATTTCTTATTCTCCCTCACTTTTCTTCCATTCGTAATCTTAAAATAACATTAGCGCAATTAATTTTTAACGACTACGACGATCATATTTCCTCTTCTTCGCAATATCAATGATAAAATATGTGGTTTGTATGTATCAATAGAGTGTATCAATCAGTATCTAGGTTACTGTAGAGAATTTTATTGGTTACTGTAGAAGCTTTATATCATTATTTTTTTTTGGTTACTGTAGAAGCTTTATATCATTAGTGACCATCAATAAGCTTGTGATAAGGATTAAAGTTTATTGCTCCGGATGT</canonical>
            <polymorphic>AAAAGAAGACATCATTGCTTCAAGGTCTCTTTTACGACCTTGGATAAGGATGAGCAGCAGGTGTCAGTAAAATCGAAAAGTACAGTAATCCGTAGCGGCGCCGAAAAGTGTCAAAAAGTGAACATGCACATCATTTCCTGAAGCCCAAAAATGCCGCCAAAAGGAAACAGAAATAAACAAAAAAGGATGCTTACTTTTTTGCCACTGTCTAGTACTACTATTTTTCGCATTATCACTAATTTTATTCGGGACAGGAGGAAAACTGATAACCAGTGCGGAGTCCTTTTGAAATTTTGCCGCCATGGAAAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACCCAGCCAACCAGTTTTACAACCACCACCCGACTGCTGAAATCATATATCATTTTTGCTCCGGCGCAGTTAACAATTTTAATTTATTTTCATTTTATTGATTTTTTTTTCTCAAAGTCTGCATTTCCGCGTAACGGYGTTTGCACAATTACCTCTGGCTATCGTACCGATTTTAGCGTTTAAGCAAGCGCGTAGCTCTGTCGGTATAGGTGAATGACTCATATGAAGCCGAATAGGACATTTTTTTTTCGAAATTTGAAAAATTCGAAAAATATCGAATTTTGGATTATATATTTTTCACTATTTTTGGTCCCTATTTTCCCTCATCTTCTTCTCTGTATATTTCTTATTCTCCCTCACTTTTCTTCCATTCGTAATCTTAAAATAACATTAGCGCAATTAATTTTTAACGACTACGACGATCATATTTCCTCTTCTTCGCAATATCAATGATAAAATATGTGGTTTGTATGTATCAATAGAGTGTATCAATCAGTATCTAGGTTACTGTAGAGAATTTTATTGGTTACTGTAGAAGCTTTATATCATTATTTTTTTTTGGTTACTGTAGAAGCTTTATATCATTAGTGACCATCAATAAGCTTGTGATAAGGATTAAAGTTTATTGCTCCGGATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>373 292 122 84 71 36 22</canonical_bands>
                <polymorphic_bands>665 122 84 71 36 22</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>112 111 105 104 88 76 67 63 59 47 40 31 30 22 18 10 8 6 3</canonical_bands>
                <polymorphic_bands>117 112 105 104 88 76 67 63 59 47 40 31 30 22 18 10 8 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAACCAGTTTTACAACCAC</pcr_primer_p1>
		<pcr_primer_p2>GCTTCATATGAGTCATTCACCTA</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>CCAACCAGTTTTACAACCACCACCCGACTGCTGAAATCATATATCATTTTTGCTCCGGCGCAGTTAACAATTTTAATTTATTTTCATTTTATTGATTTTTTTTTCTCAAAGTCTGCATTTCCGCGTAACGGTGTTTGCACAATTACCTCTGGCTATCGTACCGATTTTAGCGTTTAAGCAAGCGCGTAGCTCTGTCGGTATAGGTGAATGACTCATATGAAGC</canonical_amplicon>
		<polymorphic_amplicon>CCAACCAGTTTTACAACCACCACCCGACTGCTGAAATCATATATCATTTTTGCTCCGGCGCAGTTAACAATTTTAATTTATTTTCATTTTATTGATTTTTTTTTCTCAAAGTCTGCATTTCCGCGTAACGGYGTTTGCACAATTACCTCTGGCTATCGTACCGATTTTAGCGTTTAAGCAAGCGCGTAGCTCTGTCGGTATAGGTGAATGACTCATATGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17204</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>82692</contig_pos>
        <strand>+</strand>
        <context>GTCTGCATTT[C/G]CGCGTAACGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTAATTTATTTTCATTTTATTGATTTTTTTTTCTCAAAGTCTGCATTT</left_flank>
        <right_flank>CGCGTAACGGTGTTTGCACAATTACCTCTGGCTATCGTACCGATTTTAGC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTGTCATACAAAAGAAGACATCATTGCTTCAAGGTCTCTTTTACGACCTTGGATAAGGATGAGCAGCAGGTGTCAGTAAAATCGAAAAGTACAGTAATCCGTAGCGGCGCCGAAAAGTGTCAAAAAGTGAACATGCACATCATTTCCTGAAGCCCAAAAATGCCGCCAAAAGGAAACAGAAATAAACAAAAAAGGATGCTTACTTTTTTGCCACTGTCTAGTACTACTATTTTTCGCATTATCACTAATTTTATTCGGGACAGGAGGAAAACTGATAACCAGTGCGGAGTCCTTTTGAAATTTTGCCGCCATGGAAAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACCCAGCCAACCAGTTTTACAACCACCACCCGACTGCTGAAATCATATATCATTTTTGCTCCGGCGCAGTTAACAATTTTAATTTATTTTCATTTTATTGATTTTTTTTTCTCAAAGTCTGCATTTCCGCGTAACGGTGTTTGCACAATTACCTCTGGCTATCGTACCGATTTTAGCGTTTAAGCAAGCGCGTAGCTCTGTCGGTATAGGTGAATGACTCATATGAAGCCGAATAGGACATTTTTTTTTCGAAATTTGAAAAATTCGAAAAATATCGAATTTTGGATTATATATTTTTCACTATTTTTGGTCCCTATTTTCCCTCATCTTCTTCTCTGTATATTTCTTATTCTCCCTCACTTTTCTTCCATTCGTAATCTTAAAATAACATTAGCGCAATTAATTTTTAACGACTACGACGATCATATTTCCTCTTCTTCGCAATATCAATGATAAAATATGTGGTTTGTATGTATCAATAGAGTGTATCAATCAGTATCTAGGTTACTGTAGAGAATTTTATTGGTTACTGTAGAAGCTTTATATCATTATTTTTTTTTGGTTACTGTAGAAGCTTTATATCATTAGTGACCATCAATAAGCTTGTGATAAGGATTAAAGTTTATT</canonical>
            <polymorphic>TATTGTCATACAAAAGAAGACATCATTGCTTCAAGGTCTCTTTTACGACCTTGGATAAGGATGAGCAGCAGGTGTCAGTAAAATCGAAAAGTACAGTAATCCGTAGCGGCGCCGAAAAGTGTCAAAAAGTGAACATGCACATCATTTCCTGAAGCCCAAAAATGCCGCCAAAAGGAAACAGAAATAAACAAAAAAGGATGCTTACTTTTTTGCCACTGTCTAGTACTACTATTTTTCGCATTATCACTAATTTTATTCGGGACAGGAGGAAAACTGATAACCAGTGCGGAGTCCTTTTGAAATTTTGCCGCCATGGAAAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACCCAGCCAACCAGTTTTACAACCACCACCCGACTGCTGAAATCATATATCATTTTTGCTCCGGCGCAGTTAACAATTTTAATTTATTTTCATTTTATTGATTTTTTTTTCTCAAAGTCTGCATTTSCGCGTAACGGTGTTTGCACAATTACCTCTGGCTATCGTACCGATTTTAGCGTTTAAGCAAGCGCGTAGCTCTGTCGGTATAGGTGAATGACTCATATGAAGCCGAATAGGACATTTTTTTTTCGAAATTTGAAAAATTCGAAAAATATCGAATTTTGGATTATATATTTTTCACTATTTTTGGTCCCTATTTTCCCTCATCTTCTTCTCTGTATATTTCTTATTCTCCCTCACTTTTCTTCCATTCGTAATCTTAAAATAACATTAGCGCAATTAATTTTTAACGACTACGACGATCATATTTCCTCTTCTTCGCAATATCAATGATAAAATATGTGGTTTGTATGTATCAATAGAGTGTATCAATCAGTATCTAGGTTACTGTAGAGAATTTTATTGGTTACTGTAGAAGCTTTATATCATTATTTTTTTTTGGTTACTGTAGAAGCTTTATATCATTAGTGACCATCAATAAGCTTGTGATAAGGATTAAAGTTTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>500 192 165 143</canonical_bands>
                <polymorphic_bands>692 165 143</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>494 335 171</canonical_bands>
                <polymorphic_bands>829 171</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAACCAGTTTTACAACCAC</pcr_primer_p1>
		<pcr_primer_p2>GCTTCATATGAGTCATTCACCTA</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>CCAACCAGTTTTACAACCACCACCCGACTGCTGAAATCATATATCATTTTTGCTCCGGCGCAGTTAACAATTTTAATTTATTTTCATTTTATTGATTTTTTTTTCTCAAAGTCTGCATTTCCGCGTAACGGTGTTTGCACAATTACCTCTGGCTATCGTACCGATTTTAGCGTTTAAGCAAGCGCGTAGCTCTGTCGGTATAGGTGAATGACTCATATGAAGC</canonical_amplicon>
		<polymorphic_amplicon>CCAACCAGTTTTACAACCACCACCCGACTGCTGAAATCATATATCATTTTTGCTCCGGCGCAGTTAACAATTTTAATTTATTTTCATTTTATTGATTTTTTTTTCTCAAAGTCTGCATTTSCGCGTAACGGTGTTTGCACAATTACCTCTGGCTATCGTACCGATTTTAGCGTTTAAGCAAGCGCGTAGCTCTGTCGGTATAGGTGAATGACTCATATGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17205</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>98893</contig_pos>
        <strand>+</strand>
        <context>AATATAAGAT[A/G]AATCCATATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAACCATACAAAAAAGATCAAATTTCAAGACTGGAATATGAATATAAGAT</left_flank>
        <right_flank>AATCCATATCTGACGAATAAACGACGATCGGAATTGTCACTTCAATTGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTACCAAGTCGGCTAAGACGCACACTTAGAGAAGCTAATGGGAAGGCGTATAGGGGCGCGGTGGTTTACGCAAGTTTTTAGGTACGCTATAACTTATCAGATGTGGGTCATGGAATAATCGACTACTATACTTGCAGTTCGATTACCTCGGTTCCTGTATAAGATATAAAAACTTTGTCCACTGATGAAATATTTGGCATAATATGACCTACATTTTATTAATTGACGAAATTTCGATATCTCTAATTGGAATCGAGATAATTGAGCTGCAAGATTAGATACTTGCTCAACTACTCCAGAATCTTTAAAGGCGCATACAGTACCTCAATTTTCAATTCTTACAGATGTAACAATTCCATCGTCAAACCGTTCATCAACTGCGACGACACCAAACGCATCAATGGCAACACTGTCATGGGCAATGGCATCGGAAGGGAAAAAGAAGAGACAACCATACAAAAAAGATCAAATTTCAAGACTGGAATATGAATATAAGATAAATCCATATCTGACGAATAAACGACGATCGGAATTGTCACTTCAATTGATGCTGGATGAGAAGCAGGTTAAAGTATGGTTCCAGGTTAGTTCGTTTTGGAGTTTAGGGGGAACGGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAAAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGA</canonical>
            <polymorphic>TTTACCAAGTCGGCTAAGACGCACACTTAGAGAAGCTAATGGGAAGGCGTATAGGGGCGCGGTGGTTTACGCAAGTTTTTAGGTACGCTATAACTTATCAGATGTGGGTCATGGAATAATCGACTACTATACTTGCAGTTCGATTACCTCGGTTCCTGTATAAGATATAAAAACTTTGTCCACTGATGAAATATTTGGCATAATATGACCTACATTTTATTAATTGACGAAATTTCGATATCTCTAATTGGAATCGAGATAATTGAGCTGCAAGATTAGATACTTGCTCAACTACTCCAGAATCTTTAAAGGCGCATACAGTACCTCAATTTTCAATTCTTACAGATGTAACAATTCCATCGTCAAACCGTTCATCAACTGCGACGACACCAAACGCATCAATGGCAACACTGTCATGGGCAATGGCATCGGAAGGGAAAAAGAAGAGACAACCATACAAAAAAGATCAAATTTCAAGACTGGAATATGAATATAAGATRAATCCATATCTGACGAATAAACGACGATCGGAATTGTCACTTCAATTGATGCTGGATGAGAAGCAGGTTAAAGTATGGTTCCAGGTTAGTTCGTTTTGGAGTTTAGGGGGAACGGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAAAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTCAATTTTCAATTCTTACAG</pcr_primer_p1>
		<pcr_primer_p2>CATACTTTAACCTGCTTCTCATC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>ACCTCAATTTTCAATTCTTACAGATGTAACAATTCCATCGTCAAACCGTTCATCAACTGCGACGACACCAAACGCATCAATGGCAACACTGTCATGGGCAATGGCATCGGAAGGGAAAAAGAAGAGACAACCATACAAAAAAGATCAAATTTCAAGACTGGAATATGAATATAAGATAAATCCATATCTGACGAATAAACGACGATCGGAATTGTCACTTCAATTGATGCTGGATGAGAAGCAGGTTAAAGTATG</canonical_amplicon>
		<polymorphic_amplicon>ACCTCAATTTTCAATTCTTACAGATGTAACAATTCCATCGTCAAACCGTTCATCAACTGCGACGACACCAAACGCATCAATGGCAACACTGTCATGGGCAATGGCATCGGAAGGGAAAAAGAAGAGACAACCATACAAAAAAGATCAAATTTCAAGACTGGAATATGAATATAAGATRAATCCATATCTGACGAATAAACGACGATCGGAATTGTCACTTCAATTGATGCTGGATGAGAAGCAGGTTAAAGTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17206</snp_id>
        <super_contig>c010001349.Contig1</super_contig>
        <contig_pos>6155</contig_pos>
        <strand>+</strand>
        <context>CGGTGTTCTT[C/T]TCCGGAAATC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGATGGCAAATTGATTAGAACAAGTGGATTCCCAATTTCCGGTGTTCTT</left_flank>
        <right_flank>TCCGGAAATCGAGTTGTTTTGTAGTTGAGAACTTTGCATTGACTCCAAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGCGAACTTCTAGATCATTTCCGCGGCGACGTTGGGACAAGAAGAAGAAGAAGACGCGGTGAGAAACACGAAGAAAAAAGATGAAAAAGAAAAAGAAAGAAGAGTAGTAGAAGAAGAAGAAGAAGCAACTCTATTGAATTGCGACGAAGACGGGCGGAGTCCACAGGGCACTGCGGCACATAAATCTTTCTTGAGCAGCATGTGCTAAAATGTCGCGAGTCCATAAACACGGGAGATTGGAAATGAGGAACAGGGGCAAGGAGAGGAAAAGACAACGCACATCAAAACTGCAGTTAGAATCCCGTATTCATGTTGGAACACCACCACTAACAATAAGTCCCTTTTGTTATTTTGACTCTGGAGACAGAGAAATACAACTAAAGCCGTTTTTTTCAGTTGTTTTTGTTGTCGATTGAGGGCATGATAATGAGGGAAAATGGACACAATAGAGATGGCAAATTGATTAGAACAAGTGGATTCCCAATTTCCGGTGTTCTTTTCCGGAAATCGAGTTGTTTTGTAGTTGAGAACTTTGCATTGACTCCAAATTTTGTAGGATTCTAGGAGAAGGTCAAACAACAACTTGAGAGGAAAAATAATGAGAAGAAGGATCAAATTTCAGAATCCCGACTTTCGAAAAAGAAATACGAAGTGAGAAAAAGGCATAATTAAAAAGAATCTCACGATTAGTATGAACCATCATACTGTACTATAAGGACTTCGGAGCATTTTATGGATTGGTTTTTGTTGGCTTTTCAAATTGAATAAAAATATCTGCTAGAATTCTAAGTTTCATAGGCTGAATACTGAGTTCCTTATTATTAGAAAATGTGTATGTTTGCCAATAATTTACAGTGAATTTGCAGAGCAACAGATTCTAATTAAATTCAGAAACTTGAACTTGAAAAAATCAAAATAAAATCACCAAGTTGTGTTGAATGAAAGAAACTTCAGACTGCACAATCACTTTAGATCGGGTGGCGAGGAAAATTATATAAA</canonical>
            <polymorphic>CTGCGAACTTCTAGATCATTTCCGCGGCGACGTTGGGACAAGAAGAAGAAGAAGACGCGGTGAGAAACACGAAGAAAAAAGATGAAAAAGAAAAAGAAAGAAGAGTAGTAGAAGAAGAAGAAGAAGCAACTCTATTGAATTGCGACGAAGACGGGCGGAGTCCACAGGGCACTGCGGCACATAAATCTTTCTTGAGCAGCATGTGCTAAAATGTCGCGAGTCCATAAACACGGGAGATTGGAAATGAGGAACAGGGGCAAGGAGAGGAAAAGACAACGCACATCAAAACTGCAGTTAGAATCCCGTATTCATGTTGGAACACCACCACTAACAATAAGTCCCTTTTGTTATTTTGACTCTGGAGACAGAGAAATACAACTAAAGCCGTTTTTTTCAGTTGTTTTTGTTGTCGATTGAGGGCATGATAATGAGGGAAAATGGACACAATAGAGATGGCAAATTGATTAGAACAAGTGGATTCCCAATTTCCGGTGTTCTTYTCCGGAAATCGAGTTGTTTTGTAGTTGAGAACTTTGCATTGACTCCAAATTTTGTAGGATTCTAGGAGAAGGTCAAACAACAACTTGAGAGGAAAAATAATGAGAAGAAGGATCAAATTTCAGAATCCCGACTTTCGAAAAAGAAATACGAAGTGAGAAAAAGGCATAATTAAAAAGAATCTCACGATTAGTATGAACCATCATACTGTACTATAAGGACTTCGGAGCATTTTATGGATTGGTTTTTGTTGGCTTTTCAAATTGAATAAAAATATCTGCTAGAATTCTAAGTTTCATAGGCTGAATACTGAGTTCCTTATTATTAGAAAATGTGTATGTTTGCCAATAATTTACAGTGAATTTGCAGAGCAACAGATTCTAATTAAATTCAGAAACTTGAACTTGAAAAAATCAAAATAAAATCACCAAGTTGTGTTGAATGAAAGAAACTTCAGACTGCACAATCACTTTAGATCGGGTGGCGAGGAAAATTATATAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCACTAACAATAAGTCCCTTTT</pcr_primer_p1>
		<pcr_primer_p2>ACCTTCTCCTAGAATCCTACAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCACTAACAATAAGTCCCTTTTGTTATTTTGACTCTGGAGACAGAGAAATACAACTAAAGCCGTTTTTTTCAGTTGTTTTTGTTGTCGATTGAGGGCATGATAATGAGGGAAAATGGACACAATAGAGATGGCAAATTGATTAGAACAAGTGGATTCCCAATTTCCGGTGTTCTTTTCCGGAAATCGAGTTGTTTTGTAGTTGAGAACTTTGCATTGACTCCAAATTTTGTAGGATTCTAGGAGAAGGT</canonical_amplicon>
		<polymorphic_amplicon>ACCACTAACAATAAGTCCCTTTTGTTATTTTGACTCTGGAGACAGAGAAATACAACTAAAGCCGTTTTTTTCAGTTGTTTTTGTTGTCGATTGAGGGCATGATAATGAGGGAAAATGGACACAATAGAGATGGCAAATTGATTAGAACAAGTGGATTCCCAATTTCCGGTGTTCTTYTCCGGAAATCGAGTTGTTTTGTAGTTGAGAACTTTGCATTGACTCCAAATTTTGTAGGATTCTAGGAGAAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17207</snp_id>
        <super_contig>c010001349.Contig1</super_contig>
        <contig_pos>6104</contig_pos>
        <strand>+</strand>
        <context>TGGACACAAT[A/G]GAGATGGCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTTTTGTTGTCGATTGAGGGCATGATAATGAGGGAAAATGGACACAAT</left_flank>
        <right_flank>GAGATGGCAAATTGATTAGAACAAGTGGATTCCCAATTTCCGGTGTTCTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATAAAAAGGCATTCTTCGGTAATCGGATCTCCCCGGGGAGTGCTTTCAGCTGCGAACTTCTAGATCATTTCCGCGGCGACGTTGGGACAAGAAGAAGAAGAAGACGCGGTGAGAAACACGAAGAAAAAAGATGAAAAAGAAAAAGAAAGAAGAGTAGTAGAAGAAGAAGAAGAAGCAACTCTATTGAATTGCGACGAAGACGGGCGGAGTCCACAGGGCACTGCGGCACATAAATCTTTCTTGAGCAGCATGTGCTAAAATGTCGCGAGTCCATAAACACGGGAGATTGGAAATGAGGAACAGGGGCAAGGAGAGGAAAAGACAACGCACATCAAAACTGCAGTTAGAATCCCGTATTCATGTTGGAACACCACCACTAACAATAAGTCCCTTTTGTTATTTTGACTCTGGAGACAGAGAAATACAACTAAAGCCGTTTTTTTCAGTTGTTTTTGTTGTCGATTGAGGGCATGATAATGAGGGAAAATGGACACAATAGAGATGGCAAATTGATTAGAACAAGTGGATTCCCAATTTCCGGTGTTCTTTTCCGGAAATCGAGTTGTTTTGTAGTTGAGAACTTTGCATTGACTCCAAATTTTGTAGGATTCTAGGAGAAGGTCAAACAACAACTTGAGAGGAAAAATAATGAGAAGAAGGATCAAATTTCAGAATCCCGACTTTCGAAAAAGAAATACGAAGTGAGAAAAAGGCATAATTAAAAAGAATCTCACGATTAGTATGAACCATCATACTGTACTATAAGGACTTCGGAGCATTTTATGGATTGGTTTTTGTTGGCTTTTCAAATTGAATAAAAATATCTGCTAGAATTCTAAGTTTCATAGGCTGAATACTGAGTTCCTTATTATTAGAAAATGTGTATGTTTGCCAATAATTTACAGTGAATTTGCAGAGCAACAGATTCTAATTAAATTCAGAAACTTGAACTTGAAAAAATCAAAATAAAATCACCAAGTTGTGTTGAATGAAAGAAA</canonical>
            <polymorphic>GAATAAAAAGGCATTCTTCGGTAATCGGATCTCCCCGGGGAGTGCTTTCAGCTGCGAACTTCTAGATCATTTCCGCGGCGACGTTGGGACAAGAAGAAGAAGAAGACGCGGTGAGAAACACGAAGAAAAAAGATGAAAAAGAAAAAGAAAGAAGAGTAGTAGAAGAAGAAGAAGAAGCAACTCTATTGAATTGCGACGAAGACGGGCGGAGTCCACAGGGCACTGCGGCACATAAATCTTTCTTGAGCAGCATGTGCTAAAATGTCGCGAGTCCATAAACACGGGAGATTGGAAATGAGGAACAGGGGCAAGGAGAGGAAAAGACAACGCACATCAAAACTGCAGTTAGAATCCCGTATTCATGTTGGAACACCACCACTAACAATAAGTCCCTTTTGTTATTTTGACTCTGGAGACAGAGAAATACAACTAAAGCCGTTTTTTTCAGTTGTTTTTGTTGTCGATTGAGGGCATGATAATGAGGGAAAATGGACACAATRGAGATGGCAAATTGATTAGAACAAGTGGATTCCCAATTTCCGGTGTTCTTTTCCGGAAATCGAGTTGTTTTGTAGTTGAGAACTTTGCATTGACTCCAAATTTTGTAGGATTCTAGGAGAAGGTCAAACAACAACTTGAGAGGAAAAATAATGAGAAGAAGGATCAAATTTCAGAATCCCGACTTTCGAAAAAGAAATACGAAGTGAGAAAAAGGCATAATTAAAAAGAATCTCACGATTAGTATGAACCATCATACTGTACTATAAGGACTTCGGAGCATTTTATGGATTGGTTTTTGTTGGCTTTTCAAATTGAATAAAAATATCTGCTAGAATTCTAAGTTTCATAGGCTGAATACTGAGTTCCTTATTATTAGAAAATGTGTATGTTTGCCAATAATTTACAGTGAATTTGCAGAGCAACAGATTCTAATTAAATTCAGAAACTTGAACTTGAAAAAATCAAAATAAAATCACCAAGTTGTGTTGAATGAAAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCACTAACAATAAGTCCCTTTT</pcr_primer_p1>
		<pcr_primer_p2>ACCTTCTCCTAGAATCCTACAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCACTAACAATAAGTCCCTTTTGTTATTTTGACTCTGGAGACAGAGAAATACAACTAAAGCCGTTTTTTTCAGTTGTTTTTGTTGTCGATTGAGGGCATGATAATGAGGGAAAATGGACACAATAGAGATGGCAAATTGATTAGAACAAGTGGATTCCCAATTTCCGGTGTTCTTTTCCGGAAATCGAGTTGTTTTGTAGTTGAGAACTTTGCATTGACTCCAAATTTTGTAGGATTCTAGGAGAAGGT</canonical_amplicon>
		<polymorphic_amplicon>ACCACTAACAATAAGTCCCTTTTGTTATTTTGACTCTGGAGACAGAGAAATACAACTAAAGCCGTTTTTTTCAGTTGTTTTTGTTGTCGATTGAGGGCATGATAATGAGGGAAAATGGACACAATRGAGATGGCAAATTGATTAGAACAAGTGGATTCCCAATTTCCGGTGTTCTTTTCCGGAAATCGAGTTGTTTTGTAGTTGAGAACTTTGCATTGACTCCAAATTTTGTAGGATTCTAGGAGAAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17209</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>4553</contig_pos>
        <strand>+</strand>
        <context>CAGAGCAGCC[A/T]TGTTGTCCGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCAACATGTTGTAACCAGGGTCAGAAGGCGTGCTGTCCTCCAGAGCAGCC</left_flank>
        <right_flank>TGTTGTCCGGAGCTTAAGCTGGATACCAGTTGTCTGGCTGCCGTACCACC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAAAATTCTTTTTTTTTCGAAATCCGTTATCAGTAATCTAGAATCCTCCTTCCAGCCTGCTGCTCATCTCAAAAACCCATCCCACTCGCTTGCTGCCCTCCACCTCCACCACCAAAACCCTGCTGCCAACCAGCATTCGGTCCATGTTGCCCAGCAACCCCAAACTGTTGCCCCAAACCCTGCTGCCGTGGTCGCCGTCCAGAATACGAGGAATACGAAGACGAGGAGGGCAATCCAGGAGGCGTTCCAGCACCACCAAATCCTCCAAGAACCTGCTGCCCACCACCAACACCAGCTGCTCCTCCACCACCTCCACCTCCACCACCCCCGGCCCCTGAGGCTCCCACTCAATGCTGCCCAGGTGCTCCATACGGCAGAACTCCCTGCAGATCCGGATGTCCGAATGGGGACTGTGGATGTGGAAGACCGTGCTGTTATTATCAGAATCCAACATGTTGTAACCAGGGTCAGAAGGCGTGCTGTCCTCCAGAGCAGCCATGTTGTCCGGAGCTTAAGCTGGATACCAGTTGTCTGGCTGCCGTACCACCATGCCTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCTCGGACCACGTAGAGTCCCCACCAACCGCCGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAG</canonical>
            <polymorphic>TCCAAAATTCTTTTTTTTTCGAAATCCGTTATCAGTAATCTAGAATCCTCCTTCCAGCCTGCTGCTCATCTCAAAAACCCATCCCACTCGCTTGCTGCCCTCCACCTCCACCACCAAAACCCTGCTGCCAACCAGCATTCGGTCCATGTTGCCCAGCAACCCCAAACTGTTGCCCCAAACCCTGCTGCCGTGGTCGCCGTCCAGAATACGAGGAATACGAAGACGAGGAGGGCAATCCAGGAGGCGTTCCAGCACCACCAAATCCTCCAAGAACCTGCTGCCCACCACCAACACCAGCTGCTCCTCCACCACCTCCACCTCCACCACCCCCGGCCCCTGAGGCTCCCACTCAATGCTGCCCAGGTGCTCCATACGGCAGAACTCCCTGCAGATCCGGATGTCCGAATGGGGACTGTGGATGTGGAAGACCGTGCTGTTATTATCAGAATCCAACATGTTGTAACCAGGGTCAGAAGGCGTGCTGTCCTCCAGAGCAGCCWTGTTGTCCGGAGCTTAAGCTGGATACCAGTTGTCTGGCTGCCGTACCACCATGCCTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCTCGGACCACGTAGAGTCCCCACCAACCGCCGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>360 309 145 63 51 45 27</canonical_bands>
                <polymorphic_bands>360 309 145 96 63 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTGTTATTATCAGAATCCAACA</pcr_primer_p1>
		<pcr_primer_p2>CTTGACTGGTTGAGAGATGAG</pcr_primer_p2>
		<pcr_amplicon_size>266</pcr_amplicon_size>
		<canonical_amplicon>GCTGTTATTATCAGAATCCAACATGTTGTAACCAGGGTCAGAAGGCGTGCTGTCCTCCAGAGCAGCCATGTTGTCCGGAGCTTAAGCTGGATACCAGTTGTCTGGCTGCCGTACCACCATGCCTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAG</canonical_amplicon>
		<polymorphic_amplicon>GCTGTTATTATCAGAATCCAACATGTTGTAACCAGGGTCAGAAGGCGTGCTGTCCTCCAGAGCAGCCWTGTTGTCCGGAGCTTAAGCTGGATACCAGTTGTCTGGCTGCCGTACCACCATGCCTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17210</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>4685</contig_pos>
        <strand>+</strand>
        <context>CGCCAGGACT[C/T]CATTGTCAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACT</left_flank>
        <right_flank>CATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGCATTCGGTCCATGTTGCCCAGCAACCCCAAACTGTTGCCCCAAACCCTGCTGCCGTGGTCGCCGTCCAGAATACGAGGAATACGAAGACGAGGAGGGCAATCCAGGAGGCGTTCCAGCACCACCAAATCCTCCAAGAACCTGCTGCCCACCACCAACACCAGCTGCTCCTCCACCACCTCCACCTCCACCACCCCCGGCCCCTGAGGCTCCCACTCAATGCTGCCCAGGTGCTCCATACGGCAGAACTCCCTGCAGATCCGGATGTCCGAATGGGGACTGTGGATGTGGAAGACCGTGCTGTTATTATCAGAATCCAACATGTTGTAACCAGGGTCAGAAGGCGTGCTGTCCTCCAGAGCAGCCATGTTGTCCGGAGCTTAAGCTGGATACCAGTTGTCTGGCTGCCGTACCACCATGCCTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCTCGGACCACGTAGAGTCCCCACCAACCGCCGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAA</canonical>
            <polymorphic>CAGCATTCGGTCCATGTTGCCCAGCAACCCCAAACTGTTGCCCCAAACCCTGCTGCCGTGGTCGCCGTCCAGAATACGAGGAATACGAAGACGAGGAGGGCAATCCAGGAGGCGTTCCAGCACCACCAAATCCTCCAAGAACCTGCTGCCCACCACCAACACCAGCTGCTCCTCCACCACCTCCACCTCCACCACCCCCGGCCCCTGAGGCTCCCACTCAATGCTGCCCAGGTGCTCCATACGGCAGAACTCCCTGCAGATCCGGATGTCCGAATGGGGACTGTGGATGTGGAAGACCGTGCTGTTATTATCAGAATCCAACATGTTGTAACCAGGGTCAGAAGGCGTGCTGTCCTCCAGAGCAGCCATGTTGTCCGGAGCTTAAGCTGGATACCAGTTGTCTGGCTGCCGTACCACCATGCCTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTYCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCTCGGACCACGTAGAGTCCCCACCAACCGCCGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>314 182 179 164 161</canonical_bands>
                <polymorphic_bands>346 314 179 161</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAAGCTGGATACCAGTTGTCT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTTGGTGACTGATACTGG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTAAGCTGGATACCAGTTGTCTGGCTGCCGTACCACCATGCCTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAG</canonical_amplicon>
		<polymorphic_amplicon>TTAAGCTGGATACCAGTTGTCTGGCTGCCGTACCACCATGCCTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTYCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17211</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>4730</contig_pos>
        <strand>+</strand>
        <context>CCCCACCAAC[A/G]CTCATCTCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAAC</left_flank>
        <right_flank>CTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCCTGCTGCCGTGGTCGCCGTCCAGAATACGAGGAATACGAAGACGAGGAGGGCAATCCAGGAGGCGTTCCAGCACCACCAAATCCTCCAAGAACCTGCTGCCCACCACCAACACCAGCTGCTCCTCCACCACCTCCACCTCCACCACCCCCGGCCCCTGAGGCTCCCACTCAATGCTGCCCAGGTGCTCCATACGGCAGAACTCCCTGCAGATCCGGATGTCCGAATGGGGACTGTGGATGTGGAAGACCGTGCTGTTATTATCAGAATCCAACATGTTGTAACCAGGGTCAGAAGGCGTGCTGTCCTCCAGAGCAGCCATGTTGTCCGGAGCTTAAGCTGGATACCAGTTGTCTGGCTGCCGTACCACCATGCCTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCTCGGACCACGTAGAGTCCCCACCAACCGCCGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACC</canonical>
            <polymorphic>AACCCTGCTGCCGTGGTCGCCGTCCAGAATACGAGGAATACGAAGACGAGGAGGGCAATCCAGGAGGCGTTCCAGCACCACCAAATCCTCCAAGAACCTGCTGCCCACCACCAACACCAGCTGCTCCTCCACCACCTCCACCTCCACCACCCCCGGCCCCTGAGGCTCCCACTCAATGCTGCCCAGGTGCTCCATACGGCAGAACTCCCTGCAGATCCGGATGTCCGAATGGGGACTGTGGATGTGGAAGACCGTGCTGTTATTATCAGAATCCAACATGTTGTAACCAGGGTCAGAAGGCGTGCTGTCCTCCAGAGCAGCCATGTTGTCCGGAGCTTAAGCTGGATACCAGTTGTCTGGCTGCCGTACCACCATGCCTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACRCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCTCGGACCACGTAGAGTCCCCACCAACCGCCGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAAGCTGGATACCAGTTGTCT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTTGGTGACTGATACTGG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTAAGCTGGATACCAGTTGTCTGGCTGCCGTACCACCATGCCTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAG</canonical_amplicon>
		<polymorphic_amplicon>TTAAGCTGGATACCAGTTGTCTGGCTGCCGTACCACCATGCCTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACRCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17212</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>4769</contig_pos>
        <strand>+</strand>
        <context>TCAAGTCTCG[A/C]GCYAARGCMG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCG</left_flank>
        <right_flank>GCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGAAGACGAGGAGGGCAATCCAGGAGGCGTTCCAGCACCACCAAATCCTCCAAGAACCTGCTGCCCACCACCAACACCAGCTGCTCCTCCACCACCTCCACCTCCACCACCCCCGGCCCCTGAGGCTCCCACTCAATGCTGCCCAGGTGCTCCATACGGCAGAACTCCCTGCAGATCCGGATGTCCGAATGGGGACTGTGGATGTGGAAGACCGTGCTGTTATTATCAGAATCCAACATGTTGTAACCAGGGTCAGAAGGCGTGCTGTCCTCCAGAGCAGCCATGTTGTCCGGAGCTTAAGCTGGATACCAGTTGTCTGGCTGCCGTACCACCATGCCTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCTCGGACCACGTAGAGTCCCCACCAACCGCCGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAAC</canonical>
            <polymorphic>ACGAAGACGAGGAGGGCAATCCAGGAGGCGTTCCAGCACCACCAAATCCTCCAAGAACCTGCTGCCCACCACCAACACCAGCTGCTCCTCCACCACCTCCACCTCCACCACCCCCGGCCCCTGAGGCTCCCACTCAATGCTGCCCAGGTGCTCCATACGGCAGAACTCCCTGCAGATCCGGATGTCCGAATGGGGACTGTGGATGTGGAAGACCGTGCTGTTATTATCAGAATCCAACATGTTGTAACCAGGGTCAGAAGGCGTGCTGTCCTCCAGAGCAGCCATGTTGTCCGGAGCTTAAGCTGGATACCAGTTGTCTGGCTGCCGTACCACCATGCCTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGMGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCTCGGACCACGTAGAGTCCCCACCAACCGCCGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTCGAG</site>
                <isoschizomers>
                    <enzyme>BssHI</enzyme>
                    <enzyme>PaeR7I</enzyme>
                    <enzyme>SciI</enzyme>
                    <enzyme>Sfr274I</enzyme>
                    <enzyme>SlaI</enzyme>
                    <enzyme>TliI</enzyme>
                    <enzyme>XhoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>219 163 155 81 76 70 57 38 36 24 23 19 15 9 9 6</canonical_bands>
                <polymorphic_bands>219 163 155 85 81 70 57 38 36 24 23 19 15 9 6</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 385 99 18</canonical_bands>
                <polymorphic_bands>883 99 18</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>430 188 178 95 54 20 18 17</canonical_bands>
                <polymorphic_bands>447 188 178 95 54 20 18</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>504 297 199</canonical_bands>
                <polymorphic_bands>703 297</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAAGCTGGATACCAGTTGTCT</pcr_primer_p1>
		<pcr_primer_p2>TCAGCTTTTTGGTGACTGATA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TTAAGCTGGATACCAGTTGTCTGGCTGCCGTACCACCATGCCTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGA</canonical_amplicon>
		<polymorphic_amplicon>TTAAGCTGGATACCAGTTGTCTGGCTGCCGTACCACCATGCCTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGMGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17213</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>4772</contig_pos>
        <strand>+</strand>
        <context>AGTCTCGMGC[C/T]AARGCMGCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGC</left_flank>
        <right_flank>AAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGACGAGGAGGGCAATCCAGGAGGCGTTCCAGCACCACCAAATCCTCCAAGAACCTGCTGCCCACCACCAACACCAGCTGCTCCTCCACCACCTCCACCTCCACCACCCCCGGCCCCTGAGGCTCCCACTCAATGCTGCCCAGGTGCTCCATACGGCAGAACTCCCTGCAGATCCGGATGTCCGAATGGGGACTGTGGATGTGGAAGACCGTGCTGTTATTATCAGAATCCAACATGTTGTAACCAGGGTCAGAAGGCGTGCTGTCCTCCAGAGCAGCCATGTTGTCCGGAGCTTAAGCTGGATACCAGTTGTCTGGCTGCCGTACCACCATGCCTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCTCGGACCACGTAGAGTCCCCACCAACCGCCGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAG</canonical>
            <polymorphic>AAGACGAGGAGGGCAATCCAGGAGGCGTTCCAGCACCACCAAATCCTCCAAGAACCTGCTGCCCACCACCAACACCAGCTGCTCCTCCACCACCTCCACCTCCACCACCCCCGGCCCCTGAGGCTCCCACTCAATGCTGCCCAGGTGCTCCATACGGCAGAACTCCCTGCAGATCCGGATGTCCGAATGGGGACTGTGGATGTGGAAGACCGTGCTGTTATTATCAGAATCCAACATGTTGTAACCAGGGTCAGAAGGCGTGCTGTCCTCCAGAGCAGCCATGTTGTCCGGAGCTTAAGCTGGATACCAGTTGTCTGGCTGCCGTACCACCATGCCTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCYAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCTCGGACCACGTAGAGTCCCCACCAACCGCCGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>219 166 155 78 76 70 57 38 36 24 23 19 15 9 9 6</canonical_bands>
                <polymorphic_bands>219 166 155 85 78 70 57 38 36 24 23 19 15 9 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAAGCTGGATACCAGTTGTCT</pcr_primer_p1>
		<pcr_primer_p2>AATCAGCTTTTTGGTGACTG</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TTAAGCTGGATACCAGTTGTCTGGCTGCCGTACCACCATGCCTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATT</canonical_amplicon>
		<polymorphic_amplicon>TTAAGCTGGATACCAGTTGTCTGGCTGCCGTACCACCATGCCTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCYAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17214</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>4775</contig_pos>
        <strand>+</strand>
        <context>CTCGMGCYAA[A/G]GCMGCTGGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAA</left_flank>
        <right_flank>GCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGAGGAGGGCAATCCAGGAGGCGTTCCAGCACCACCAAATCCTCCAAGAACCTGCTGCCCACCACCAACACCAGCTGCTCCTCCACCACCTCCACCTCCACCACCCCCGGCCCCTGAGGCTCCCACTCAATGCTGCCCAGGTGCTCCATACGGCAGAACTCCCTGCAGATCCGGATGTCCGAATGGGGACTGTGGATGTGGAAGACCGTGCTGTTATTATCAGAATCCAACATGTTGTAACCAGGGTCAGAAGGCGTGCTGTCCTCCAGAGCAGCCATGTTGTCCGGAGCTTAAGCTGGATACCAGTTGTCTGGCTGCCGTACCACCATGCCTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCTCGGACCACGTAGAGTCCCCACCAACCGCCGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACA</canonical>
            <polymorphic>ACGAGGAGGGCAATCCAGGAGGCGTTCCAGCACCACCAAATCCTCCAAGAACCTGCTGCCCACCACCAACACCAGCTGCTCCTCCACCACCTCCACCTCCACCACCCCCGGCCCCTGAGGCTCCCACTCAATGCTGCCCAGGTGCTCCATACGGCAGAACTCCCTGCAGATCCGGATGTCCGAATGGGGACTGTGGATGTGGAAGACCGTGCTGTTATTATCAGAATCCAACATGTTGTAACCAGGGTCAGAAGGCGTGCTGTCCTCCAGAGCAGCCATGTTGTCCGGAGCTTAAGCTGGATACCAGTTGTCTGGCTGCCGTACCACCATGCCTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAARGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCTCGGACCACGTAGAGTCCCCACCAACCGCCGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAGAGCTTGTCCATCTTG</pcr_primer_p1>
		<pcr_primer_p2>AGGATTGTTCAATCAGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>CTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCT</canonical_amplicon>
		<polymorphic_amplicon>CTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAARGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17215</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>4778</contig_pos>
        <strand>+</strand>
        <context>GMGCYAARGC[A/C]GCTGGCACCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGC</left_flank>
        <right_flank>GCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAGGGCAATCCAGGAGGCGTTCCAGCACCACCAAATCCTCCAAGAACCTGCTGCCCACCACCAACACCAGCTGCTCCTCCACCACCTCCACCTCCACCACCCCCGGCCCCTGAGGCTCCCACTCAATGCTGCCCAGGTGCTCCATACGGCAGAACTCCCTGCAGATCCGGATGTCCGAATGGGGACTGTGGATGTGGAAGACCGTGCTGTTATTATCAGAATCCAACATGTTGTAACCAGGGTCAGAAGGCGTGCTGTCCTCCAGAGCAGCCATGTTGTCCGGAGCTTAAGCTGGATACCAGTTGTCTGGCTGCCGTACCACCATGCCTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCTCGGACCACGTAGAGTCCCCACCAACCGCCGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAG</canonical>
            <polymorphic>AGGAGGGCAATCCAGGAGGCGTTCCAGCACCACCAAATCCTCCAAGAACCTGCTGCCCACCACCAACACCAGCTGCTCCTCCACCACCTCCACCTCCACCACCCCCGGCCCCTGAGGCTCCCACTCAATGCTGCCCAGGTGCTCCATACGGCAGAACTCCCTGCAGATCCGGATGTCCGAATGGGGACTGTGGATGTGGAAGACCGTGCTGTTATTATCAGAATCCAACATGTTGTAACCAGGGTCAGAAGGCGTGCTGTCCTCCAGAGCAGCCATGTTGTCCGGAGCTTAAGCTGGATACCAGTTGTCTGGCTGCCGTACCACCATGCCTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCMGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCTCGGACCACGTAGAGTCCCCACCAACCGCCGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>219 215 172 165 72 70 43 38 6</canonical_bands>
                <polymorphic_bands>219 215 203 172 72 70 43 6</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>219 172 155 76 72 70 57 38 36 24 23 19 15 9 9 6</canonical_bands>
                <polymorphic_bands>219 172 155 76 72 70 57 47 36 24 23 19 15 9 6</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>499 429 72</canonical_bands>
                <polymorphic_bands>928 72</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>499 429 72</canonical_bands>
                <polymorphic_bands>928 72</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>502 186 139 58 52 43 20</canonical_bands>
                <polymorphic_bands>688 139 58 52 43 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAGAGCTTGTCCATCTTG</pcr_primer_p1>
		<pcr_primer_p2>AGGATTGTTCAATCAGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>CTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCT</canonical_amplicon>
		<polymorphic_amplicon>CTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCMGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17216</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>4928</contig_pos>
        <strand>+</strand>
        <context>GCGAGGGAGG[A/G]TGTCAGTTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGG</left_flank>
        <right_flank>TGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAGAACTCCCTGCAGATCCGGATGTCCGAATGGGGACTGTGGATGTGGAAGACCGTGCTGTTATTATCAGAATCCAACATGTTGTAACCAGGGTCAGAAGGCGTGCTGTCCTCCAGAGCAGCCATGTTGTCCGGAGCTTAAGCTGGATACCAGTTGTCTGGCTGCCGTACCACCATGCCTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCTCGGACCACGTAGAGTCCCCACCAACCGCCGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGT</canonical>
            <polymorphic>GCAGAACTCCCTGCAGATCCGGATGTCCGAATGGGGACTGTGGATGTGGAAGACCGTGCTGTTATTATCAGAATCCAACATGTTGTAACCAGGGTCAGAAGGCGTGCTGTCCTCCAGAGCAGCCATGTTGTCCGGAGCTTAAGCTGGATACCAGTTGTCTGGCTGCCGTACCACCATGCCTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCTCGGACCACGTAGAGTCCCCACCAACCGCCGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGRTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>123 108 74 69 67 61 54 48 47 42 39 38 36 31 31 26 24 21 13 10 9 9 6 6 6 2</canonical_bands>
                <polymorphic_bands>123 108 74 69 67 61 54 48 48 47 42 38 36 31 31 26 24 21 13 10 9 6 6 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCATCTCTCAACCAGTCAAG</pcr_primer_p1>
		<pcr_primer_p2>CAAAGGATCTCTTCGTTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCTCGGACCACGTAGAGTCCCCACCAACCGCCGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTG</canonical_amplicon>
		<polymorphic_amplicon>CTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCTCGGACCACGTAGAGTCCCCACCAACCGCCGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGRTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17217</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>4940</contig_pos>
        <strand>+</strand>
        <context>GTCAGTTGTG[C/T]CTGAATGGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTG</left_flank>
        <right_flank>CTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAGATCCGGATGTCCGAATGGGGACTGTGGATGTGGAAGACCGTGCTGTTATTATCAGAATCCAACATGTTGTAACCAGGGTCAGAAGGCGTGCTGTCCTCCAGAGCAGCCATGTTGTCCGGAGCTTAAGCTGGATACCAGTTGTCTGGCTGCCGTACCACCATGCCTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCTCGGACCACGTAGAGTCCCCACCAACCGCCGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTT</canonical>
            <polymorphic>GCAGATCCGGATGTCCGAATGGGGACTGTGGATGTGGAAGACCGTGCTGTTATTATCAGAATCCAACATGTTGTAACCAGGGTCAGAAGGCGTGCTGTCCTCCAGAGCAGCCATGTTGTCCGGAGCTTAAGCTGGATACCAGTTGTCTGGCTGCCGTACCACCATGCCTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCTCGGACCACGTAGAGTCCCCACCAACCGCCGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGYCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>224 158 141 86 80 76 61 46 43 42 27 16</canonical_bands>
                <polymorphic_bands>224 158 141 122 86 80 61 43 42 27 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCAAGACCATTGTCAAGTCTC</pcr_primer_p1>
		<pcr_primer_p2>TACATGGCACACAATCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCTCGGACCACGTAGAGTCCCCACCAACCGCCGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTA</canonical_amplicon>
		<polymorphic_amplicon>GTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCTCGGACCACGTAGAGTCCCCACCAACCGCCGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGYCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17218</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>4955</contig_pos>
        <strand>+</strand>
        <context>ATGGAACTCC[A/G]TTGAAGAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCC</left_flank>
        <right_flank>TTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAATGGGGACTGTGGATGTGGAAGACCGTGCTGTTATTATCAGAATCCAACATGTTGTAACCAGGGTCAGAAGGCGTGCTGTCCTCCAGAGCAGCCATGTTGTCCGGAGCTTAAGCTGGATACCAGTTGTCTGGCTGCCGTACCACCATGCCTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCTCGGACCACGTAGAGTCCCCACCAACCGCCGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTT</canonical>
            <polymorphic>CGAATGGGGACTGTGGATGTGGAAGACCGTGCTGTTATTATCAGAATCCAACATGTTGTAACCAGGGTCAGAAGGCGTGCTGTCCTCCAGAGCAGCCATGTTGTCCGGAGCTTAAGCTGGATACCAGTTGTCTGGCTGCCGTACCACCATGCCTCAGAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCTCGGACCACGTAGAGTCCCCACCAACCGCCGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCRTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGAGCTCACGTCAGAGTTAAG</pcr_primer_p1>
		<pcr_primer_p2>CCAGCTCTCTTGGTTCTATG</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>GTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGG</canonical_amplicon>
		<polymorphic_amplicon>GTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCRTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17219</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>5111</contig_pos>
        <strand>+</strand>
        <context>AGAGAGCTGG[A/C]GTGAGTTGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGG</left_flank>
        <right_flank>GTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCTCGGACCACGTAGAGTCCCCACCAACCGCCGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAAC</canonical>
            <polymorphic>GAGCTTGTCCATCTTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCTCGGACCACGTAGAGTCCCCACCAACCGCCGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGMGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGTACTTATCTTCAACCACAA</pcr_primer_p1>
		<pcr_primer_p2>TTTATAACTACTCCCCGTCCA</pcr_primer_p2>
		<pcr_amplicon_size>654</pcr_amplicon_size>
		<canonical_amplicon>CATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTT</canonical_amplicon>
		<polymorphic_amplicon>CATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGMGTGAGTTGGTCTACTCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17220</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>5124</contig_pos>
        <strand>+</strand>
        <context>GAGTTGGTCT[A/T]YTCTTTTCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCT</left_flank>
        <right_flank>CTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCTCGGACCACGTAGAGTCCCCACCAACCGCCGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTG</canonical>
            <polymorphic>TTGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCTCGGACCACGTAGAGTCCCCACCAACCGCCGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTWCTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 409 89</canonical_bands>
                <polymorphic_bands>911 89</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGTACTTATCTTCAACCACAA</pcr_primer_p1>
		<pcr_primer_p2>TTTATAACTACTCCCCGTCCA</pcr_primer_p2>
		<pcr_amplicon_size>654</pcr_amplicon_size>
		<canonical_amplicon>CATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAA</canonical_amplicon>
		<polymorphic_amplicon>CATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTWCTCTTTTCAAGGGCGTATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17221</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>5125</contig_pos>
        <strand>+</strand>
        <context>AGTTGGTCTW[C/T]TCTTTTCAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTA</left_flank>
        <right_flank>TCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCTCGGACCACGTAGAGTCCCCACCAACCGCCGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGG</canonical>
            <polymorphic>TGCCCATGTAGAAAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCTCGGACCACGTAGAGTCCCCACCAACCGCCGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTAYTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>503 409 88</canonical_bands>
                <polymorphic_bands>912 88</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGTACTTATCTTCAACCACAA</pcr_primer_p1>
		<pcr_primer_p2>TTTATAACTACTCCCCGTCCA</pcr_primer_p2>
		<pcr_amplicon_size>654</pcr_amplicon_size>
		<canonical_amplicon>CATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAAC</canonical_amplicon>
		<polymorphic_amplicon>CATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTAYTCTTTTCAAGGGCGTATAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17223</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>5924</contig_pos>
        <strand>+</strand>
        <context>AGTGTTACTC[C/T]TTTAAAACAM</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAATTTAATTTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTACTC</left_flank>
        <right_flank>TTTAAAACAATCATATATTCCAGTGCTTGCCACATCCCCAATGCACGGTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAATAACTAACTAGTTTAGCAAGTTTCGATTTTTCGTCTAGATTATTTGGCTCATAACTACCTTCAAACTTAATATTTTTGATCAAACTAAAAATTAAAATGTAGATATTGACAAGAGCTGCAAAATGACATATAATTCAACTATATTCATGACATGGCTTCGCGAATCAGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTACTCCTTTAAAACAATCATATATTCCAGTGCTTGCCACATCCCCAATGCACGGTCCATGTCCGTCGCTACAAACGTAACCTAATCGGATCGCAATACTGTGAGCCTTGCAACGGTCACTACGGACGTAAGAAGAGAGAAGCCGAGAGAGATCAATGCTTGAGACGAGAGAAACGATACGCAGATGAGCAGTGTGATAATGATGAGTTCAGTATTAATGAGAGGAGCAAACGACAGGCATATAATCCGAAAGGAATCTTGGATATTGTGAAGCTGTTGTCAAAGGCGTCGTCGGGAGGTGAGTCTTGATTTTTGGGACTTTTTAAAGGCATCCTAAAATCGTAATTCTTCATTTTTGATAAGTTGATAAGAAGTCGCATAGCTCAGCGGATCTCCATGACTACTGCACATAATATCTCCCAATTTTCCAGGCAATAACCCAGGAGGCTGCATGAAATTCCCGGCATGTGTGTTAGCGCAAAAGAAGCGCAGAAAGCGTAACGCTGA</canonical>
            <polymorphic>CCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAATAACTAACTAGTTTAGCAAGTTTCGATTTTTCGTCTAGATTATTTGGCTCATAACTACCTTCAAACTTAATATTTTTGATCAAACTAAAAATTAAAATGTAGATATTGACAAGAGCTGCAAAATGACATATAATTCAACTATATTCATGACATGGCTTCGCGAATCAGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTACTCYTTTAAAACAATCATATATTCCAGTGCTTGCCACATCCCCAATGCACGGTCCATGTCCGTCGCTACAAACGTAACCTAATCGGATCGCAATACTGTGAGCCTTGCAACGGTCACTACGGACGTAAGAAGAGAGAAGCCGAGAGAGATCAATGCTTGAGACGAGAGAAACGATACGCAGATGAGCAGTGTGATAATGATGAGTTCAGTATTAATGAGAGGAGCAAACGACAGGCATATAATCCGAAAGGAATCTTGGATATTGTGAAGCTGTTGTCAAAGGCGTCGTCGGGAGGTGAGTCTTGATTTTTGGGACTTTTTAAAGGCATCCTAAAATCGTAATTCTTCATTTTTGATAAGTTGATAAGAAGTCGCATAGCTCAGCGGATCTCCATGACTACTGCACATAATATCTCCCAATTTTCCAGGCAATAACCCAGGAGGCTGCATGAAATTCCCGGCATGTGTGTTAGCGCAAAAGAAGCGCAGAAAGCGTAACGCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGTCTTTGAAGGGACTACTTC</pcr_primer_p1>
		<pcr_primer_p2>TCTCTCTTCTTACGTCCGTAGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTACTCCTTTAAAACAATCATATATTCCAGTGCTTGCCACATCCCCAATGCACGGTCCATGTCCGTCGCTACAAACGTAACCTAATCGGATCGCAATACTGTGAGCCTTGCAACGGTCACTACGGACGTAAGAAGAGAGA</canonical_amplicon>
		<polymorphic_amplicon>AGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTACTCYTTTAAAACAATCATATATTCCAGTGCTTGCCACATCCCCAATGCACGGTCCATGTCCGTCGCTACAAACGTAACCTAATCGGATCGCAATACTGTGAGCCTTGCAACGGTCACTACGGACGTAAGAAGAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17224</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>5873</contig_pos>
        <strand>+</strand>
        <context>TTTGCAAGAT[C/G]TAAATTTAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGTTTTTGCAAGAT</left_flank>
        <right_flank>TAAATTTAATTTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTACTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAATAACTAACTAGTTTAGCAAGTTTCGATTTTTCGTCTAGATTATTTGGCTCATAACTACCTTCAAACTTAATATTTTTGATCAAACTAAAAATTAAAATGTAGATATTGACAAGAGCTGCAAAATGACATATAATTCAACTATATTCATGACATGGCTTCGCGAATCAGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTACTCCTTTAAAACAATCATATATTCCAGTGCTTGCCACATCCCCAATGCACGGTCCATGTCCGTCGCTACAAACGTAACCTAATCGGATCGCAATACTGTGAGCCTTGCAACGGTCACTACGGACGTAAGAAGAGAGAAGCCGAGAGAGATCAATGCTTGAGACGAGAGAAACGATACGCAGATGAGCAGTGTGATAATGATGAGTTCAGTATTAATGAGAGGAGCAAACGACAGGCATATAATCCGAAAGGAATCTTGGATATTGTGAAGCTGTTGTCAAAGGCGTCGTCGGGAGGTGAGTCTTGATTTTTGGGACTTTTTAAAGGCATCCTAAAATCGTAATTCTTCATTTTTGATAAGTTGATAAGAAGTCGCATAGCTCAGCGGATCTCCATGACTACTGCACATAATATCTCCCAATTTTCCAGGCAATAACCCAGGAGGCTGCATGAA</canonical>
            <polymorphic>GAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAATAACTAACTAGTTTAGCAAGTTTCGATTTTTCGTCTAGATTATTTGGCTCATAACTACCTTCAAACTTAATATTTTTGATCAAACTAAAAATTAAAATGTAGATATTGACAAGAGCTGCAAAATGACATATAATTCAACTATATTCATGACATGGCTTCGCGAATCAGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGTTTTTGCAAGATSTAAATTTAATTTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTACTCCTTTAAAACAATCATATATTCCAGTGCTTGCCACATCCCCAATGCACGGTCCATGTCCGTCGCTACAAACGTAACCTAATCGGATCGCAATACTGTGAGCCTTGCAACGGTCACTACGGACGTAAGAAGAGAGAAGCCGAGAGAGATCAATGCTTGAGACGAGAGAAACGATACGCAGATGAGCAGTGTGATAATGATGAGTTCAGTATTAATGAGAGGAGCAAACGACAGGCATATAATCCGAAAGGAATCTTGGATATTGTGAAGCTGTTGTCAAAGGCGTCGTCGGGAGGTGAGTCTTGATTTTTGGGACTTTTTAAAGGCATCCTAAAATCGTAATTCTTCATTTTTGATAAGTTGATAAGAAGTCGCATAGCTCAGCGGATCTCCATGACTACTGCACATAATATCTCCCAATTTTCCAGGCAATAACCCAGGAGGCTGCATGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGTCTTTGAAGGGACTACTTC</pcr_primer_p1>
		<pcr_primer_p2>TCTCTCTTCTTACGTCCGTAGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTACTCCTTTAAAACAATCATATATTCCAGTGCTTGCCACATCCCCAATGCACGGTCCATGTCCGTCGCTACAAACGTAACCTAATCGGATCGCAATACTGTGAGCCTTGCAACGGTCACTACGGACGTAAGAAGAGAGA</canonical_amplicon>
		<polymorphic_amplicon>AGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGTTTTTGCAAGATSTAAATTTAATTTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTACTCCTTTAAAACAATCATATATTCCAGTGCTTGCCACATCCCCAATGCACGGTCCATGTCCGTCGCTACAAACGTAACCTAATCGGATCGCAATACTGTGAGCCTTGCAACGGTCACTACGGACGTAAGAAGAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17225</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>5860</contig_pos>
        <strand>+</strand>
        <context>GCTTCTGGTG[C/G]TTTTTGCAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTG</left_flank>
        <right_flank>TTTTTGCAAGATGTAAATTTAATTTTTTGACTTAAACCCCAACCACTAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAATAACTAACTAGTTTAGCAAGTTTCGATTTTTCGTCTAGATTATTTGGCTCATAACTACCTTCAAACTTAATATTTTTGATCAAACTAAAAATTAAAATGTAGATATTGACAAGAGCTGCAAAATGACATATAATTCAACTATATTCATGACATGGCTTCGCGAATCAGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTACTCCTTTAAAACAATCATATATTCCAGTGCTTGCCACATCCCCAATGCACGGTCCATGTCCGTCGCTACAAACGTAACCTAATCGGATCGCAATACTGTGAGCCTTGCAACGGTCACTACGGACGTAAGAAGAGAGAAGCCGAGAGAGATCAATGCTTGAGACGAGAGAAACGATACGCAGATGAGCAGTGTGATAATGATGAGTTCAGTATTAATGAGAGGAGCAAACGACAGGCATATAATCCGAAAGGAATCTTGGATATTGTGAAGCTGTTGTCAAAGGCGTCGTCGGGAGGTGAGTCTTGATTTTTGGGACTTTTTAAAGGCATCCTAAAATCGTAATTCTTCATTTTTGATAAGTTGATAAGAAGTCGCATAGCTCAGCGGATCTCCATGACTACTGCACATAATATCTCCCAATTTTCCAGGCAATAACCCAG</canonical>
            <polymorphic>CAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAATAACTAACTAGTTTAGCAAGTTTCGATTTTTCGTCTAGATTATTTGGCTCATAACTACCTTCAAACTTAATATTTTTGATCAAACTAAAAATTAAAATGTAGATATTGACAAGAGCTGCAAAATGACATATAATTCAACTATATTCATGACATGGCTTCGCGAATCAGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGSTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTACTCCTTTAAAACAATCATATATTCCAGTGCTTGCCACATCCCCAATGCACGGTCCATGTCCGTCGCTACAAACGTAACCTAATCGGATCGCAATACTGTGAGCCTTGCAACGGTCACTACGGACGTAAGAAGAGAGAAGCCGAGAGAGATCAATGCTTGAGACGAGAGAAACGATACGCAGATGAGCAGTGTGATAATGATGAGTTCAGTATTAATGAGAGGAGCAAACGACAGGCATATAATCCGAAAGGAATCTTGGATATTGTGAAGCTGTTGTCAAAGGCGTCGTCGGGAGGTGAGTCTTGATTTTTGGGACTTTTTAAAGGCATCCTAAAATCGTAATTCTTCATTTTTGATAAGTTGATAAGAAGTCGCATAGCTCAGCGGATCTCCATGACTACTGCACATAATATCTCCCAATTTTCCAGGCAATAACCCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCAGAGTCTTTGAAGGGACTA</pcr_primer_p1>
		<pcr_primer_p2>TTCTTACGTCCGTAGTGACC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATCAGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTACTCCTTTAAAACAATCATATATTCCAGTGCTTGCCACATCCCCAATGCACGGTCCATGTCCGTCGCTACAAACGTAACCTAATCGGATCGCAATACTGTGAGCCTTGCAACGGTCACTACGGACGTAAGAA</canonical_amplicon>
		<polymorphic_amplicon>AATCAGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGSTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTACTCCTTTAAAACAATCATATATTCCAGTGCTTGCCACATCCCCAATGCACGGTCCATGTCCGTCGCTACAAACGTAACCTAATCGGATCGCAATACTGTGAGCCTTGCAACGGTCACTACGGACGTAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17226</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>5848</contig_pos>
        <strand>+</strand>
        <context>GGATGTTTCT[A/G]GGCTTCTGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTTCGCGAATCAGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCT</left_flank>
        <right_flank>GGCTTCTGGTGGTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAAACC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAATAACTAACTAGTTTAGCAAGTTTCGATTTTTCGTCTAGATTATTTGGCTCATAACTACCTTCAAACTTAATATTTTTGATCAAACTAAAAATTAAAATGTAGATATTGACAAGAGCTGCAAAATGACATATAATTCAACTATATTCATGACATGGCTTCGCGAATCAGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTACTCCTTTAAAACAATCATATATTCCAGTGCTTGCCACATCCCCAATGCACGGTCCATGTCCGTCGCTACAAACGTAACCTAATCGGATCGCAATACTGTGAGCCTTGCAACGGTCACTACGGACGTAAGAAGAGAGAAGCCGAGAGAGATCAATGCTTGAGACGAGAGAAACGATACGCAGATGAGCAGTGTGATAATGATGAGTTCAGTATTAATGAGAGGAGCAAACGACAGGCATATAATCCGAAAGGAATCTTGGATATTGTGAAGCTGTTGTCAAAGGCGTCGTCGGGAGGTGAGTCTTGATTTTTGGGACTTTTTAAAGGCATCCTAAAATCGTAATTCTTCATTTTTGATAAGTTGATAAGAAGTCGCATAGCTCAGCGGATCTCCATGACTACTGCACATAATATCTCCCAATTTTCCAG</canonical>
            <polymorphic>GATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAATAACTAACTAGTTTAGCAAGTTTCGATTTTTCGTCTAGATTATTTGGCTCATAACTACCTTCAAACTTAATATTTTTGATCAAACTAAAAATTAAAATGTAGATATTGACAAGAGCTGCAAAATGACATATAATTCAACTATATTCATGACATGGCTTCGCGAATCAGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTRGGCTTCTGGTGGTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTACTCCTTTAAAACAATCATATATTCCAGTGCTTGCCACATCCCCAATGCACGGTCCATGTCCGTCGCTACAAACGTAACCTAATCGGATCGCAATACTGTGAGCCTTGCAACGGTCACTACGGACGTAAGAAGAGAGAAGCCGAGAGAGATCAATGCTTGAGACGAGAGAAACGATACGCAGATGAGCAGTGTGATAATGATGAGTTCAGTATTAATGAGAGGAGCAAACGACAGGCATATAATCCGAAAGGAATCTTGGATATTGTGAAGCTGTTGTCAAAGGCGTCGTCGGGAGGTGAGTCTTGATTTTTGGGACTTTTTAAAGGCATCCTAAAATCGTAATTCTTCATTTTTGATAAGTTGATAAGAAGTCGCATAGCTCAGCGGATCTCCATGACTACTGCACATAATATCTCCCAATTTTCCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 168 150 83 70 27</canonical_bands>
                <polymorphic_bands>670 150 83 70 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTTCGATTTTTCGTCTAGATT</pcr_primer_p1>
		<pcr_primer_p2>AGTTAGTGGTTGGGGTTTAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTTTCGATTTTTCGTCTAGATTATTTGGCTCATAACTACCTTCAAACTTAATATTTTTGATCAAACTAAAAATTAAAATGTAGATATTGACAAGAGCTGCAAAATGACATATAATTCAACTATATTCATGACATGGCTTCGCGAATCAGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAAACCCCAACCACTAACT</canonical_amplicon>
		<polymorphic_amplicon>AGTTTCGATTTTTCGTCTAGATTATTTGGCTCATAACTACCTTCAAACTTAATATTTTTGATCAAACTAAAAATTAAAATGTAGATATTGACAAGAGCTGCAAAATGACATATAATTCAACTATATTCATGACATGGCTTCGCGAATCAGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTRGGCTTCTGGTGGTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAAACCCCAACCACTAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17229</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>5589</contig_pos>
        <strand></strand>
        <context>ctaccaaaca[A/G]tatataattt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACA</left_flank>
        <right_flank>TATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAATAACTAACTAGTTTAGCAAGTTTCGATTTTTCGTCTAGATTATTTGGCTCATAACTACCTTCAAACTTAATATTTTTGATCAAACTAAAAATTAAAATGTAGATATTGACAAGAGCTGCAAAATGACATATAATTCAACTATATTCATGACATGGCTTCGCGAATCAGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTACTCCTTTAAAACAATCATATATTCCAGTGCTTGCCACATCCCCAATGCACGGTCCATGTCCGTCGCTACAAACGTAACCTAATCGGATCGCAATACTGTGAGCCTTGCAACGGTCACTACGGACGTAAGAAGAGAGAAGCCGAGAGAGATCAATGCTTGAGACGAGAGA</canonical>
            <polymorphic>GCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACARTATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAATAACTAACTAGTTTAGCAAGTTTCGATTTTTCGTCTAGATTATTTGGCTCATAACTACCTTCAAACTTAATATTTTTGATCAAACTAAAAATTAAAATGTAGATATTGACAAGAGCTGCAAAATGACATATAATTCAACTATATTCATGACATGGCTTCGCGAATCAGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTACTCCTTTAAAACAATCATATATTCCAGTGCTTGCCACATCCCCAATGCACGGTCCATGTCCGTCGCTACAAACGTAACCTAATCGGATCGCAATACTGTGAGCCTTGCAACGGTCACTACGGACGTAAGAAGAGAGAAGCCGAGAGAGATCAATGCTTGAGACGAGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGTACTTATCTTCAACCACAA</pcr_primer_p1>
		<pcr_primer_p2>TTTATAACTACTCCCCGTCCA</pcr_primer_p2>
		<pcr_amplicon_size>654</pcr_amplicon_size>
		<canonical_amplicon>AATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAA</canonical_amplicon>
		<polymorphic_amplicon>ARTATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17230</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>5577</contig_pos>
        <strand></strand>
        <context>actagwaacg[A/C]gctaccaaac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACG</left_flank>
        <right_flank>GCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGAC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAATAACTAACTAGTTTAGCAAGTTTCGATTTTTCGTCTAGATTATTTGGCTCATAACTACCTTCAAACTTAATATTTTTGATCAAACTAAAAATTAAAATGTAGATATTGACAAGAGCTGCAAAATGACATATAATTCAACTATATTCATGACATGGCTTCGCGAATCAGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTACTCCTTTAAAACAATCATATATTCCAGTGCTTGCCACATCCCCAATGCACGGTCCATGTCCGTCGCTACAAACGTAACCTAATCGGATCGCAATACTGTGAGCCTTGCAACGGTCACTACGGACGTAAGAAGAGAGAAGCCGAGAGAGATCAATGCT</canonical>
            <polymorphic>ACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGMGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAATAACTAACTAGTTTAGCAAGTTTCGATTTTTCGTCTAGATTATTTGGCTCATAACTACCTTCAAACTTAATATTTTTGATCAAACTAAAAATTAAAATGTAGATATTGACAAGAGCTGCAAAATGACATATAATTCAACTATATTCATGACATGGCTTCGCGAATCAGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTACTCCTTTAAAACAATCATATATTCCAGTGCTTGCCACATCCCCAATGCACGGTCCATGTCCGTCGCTACAAACGTAACCTAATCGGATCGCAATACTGTGAGCCTTGCAACGGTCACTACGGACGTAAGAAGAGAGAAGCCGAGAGAGATCAATGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>289 243 183 180 76 29</canonical_bands>
                <polymorphic_bands>363 289 243 76 29</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>289 183 172 112 68 40 37 36 29 18 16</canonical_bands>
                <polymorphic_bands>295 289 172 68 40 37 36 29 18 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGTACTTATCTTCAACCACAA</pcr_primer_p1>
		<pcr_primer_p2>TTTATAACTACTCCCCGTCCA</pcr_primer_p2>
		<pcr_amplicon_size>654</pcr_amplicon_size>
		<canonical_amplicon>GAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAA</canonical_amplicon>
		<polymorphic_amplicon>GMGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17231</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>5572</contig_pos>
        <strand></strand>
        <context>atagaactag[T/A]aacgmgctac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAG</left_flank>
        <right_flank>AACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAATAACTAACTAGTTTAGCAAGTTTCGATTTTTCGTCTAGATTATTTGGCTCATAACTACCTTCAAACTTAATATTTTTGATCAAACTAAAAATTAAAATGTAGATATTGACAAGAGCTGCAAAATGACATATAATTCAACTATATTCATGACATGGCTTCGCGAATCAGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTACTCCTTTAAAACAATCATATATTCCAGTGCTTGCCACATCCCCAATGCACGGTCCATGTCCGTCGCTACAAACGTAACCTAATCGGATCGCAATACTGTGAGCCTTGCAACGGTCACTACGGACGTAAGAAGAGAGAAGCCGAGAGAGATCA</canonical>
            <polymorphic>GGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGWAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAATAACTAACTAGTTTAGCAAGTTTCGATTTTTCGTCTAGATTATTTGGCTCATAACTACCTTCAAACTTAATATTTTTGATCAAACTAAAAATTAAAATGTAGATATTGACAAGAGCTGCAAAATGACATATAATTCAACTATATTCATGACATGGCTTCGCGAATCAGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTACTCCTTTAAAACAATCATATATTCCAGTGCTTGCCACATCCCCAATGCACGGTCCATGTCCGTCGCTACAAACGTAACCTAATCGGATCGCAATACTGTGAGCCTTGCAACGGTCACTACGGACGTAAGAAGAGAGAAGCCGAGAGAGATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACTAGT</site>
                <isoschizomers>
                    <enzyme>AhlI</enzyme>
                    <enzyme>BcuI</enzyme>
                    <enzyme>SpeI</enzyme>
                </isoschizomers>
                <canonical_bands>495 422 83</canonical_bands>
                <polymorphic_bands>578 422</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>407 346 77 57 40 39 34</canonical_bands>
                <polymorphic_bands>407 403 77 40 39 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGTACTTATCTTCAACCACAA</pcr_primer_p1>
		<pcr_primer_p2>TTTATAACTACTCCCCGTCCA</pcr_primer_p2>
		<pcr_amplicon_size>654</pcr_amplicon_size>
		<canonical_amplicon>GTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAA</canonical_amplicon>
		<polymorphic_amplicon>GWAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17232</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>5495</contig_pos>
        <strand></strand>
        <context>tttcgcttgc[T/C]ctctagatta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGC</left_flank>
        <right_flank>CTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAATAACTAACTAGTTTAGCAAGTTTCGATTTTTCGTCTAGATTATTTGGCTCATAACTACCTTCAAACTTAATATTTTTGATCAAACTAAAAATTAAAATGTAGATATTGACAAGAGCTGCAAAATGACATATAATTCAACTATATTCATGACATGGCTTCGCGAATCAGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTACTCCTTTAAAACAATCATATATTCCAGTGCTTGCCACATCCCCAATGCACGGTCCATGTCCGTCGCTACAAACGT</canonical>
            <polymorphic>CTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCYCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAATAACTAACTAGTTTAGCAAGTTTCGATTTTTCGTCTAGATTATTTGGCTCATAACTACCTTCAAACTTAATATTTTTGATCAAACTAAAAATTAAAATGTAGATATTGACAAGAGCTGCAAAATGACATATAATTCAACTATATTCATGACATGGCTTCGCGAATCAGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTACTCCTTTAAAACAATCATATATTCCAGTGCTTGCCACATCCCCAATGCACGGTCCATGTCCGTCGCTACAAACGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGTACTTATCTTCAACCACAA</pcr_primer_p1>
		<pcr_primer_p2>TTTATAACTACTCCCCGTCCA</pcr_primer_p2>
		<pcr_amplicon_size>654</pcr_amplicon_size>
		<canonical_amplicon>CTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAA</canonical_amplicon>
		<polymorphic_amplicon>CYCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17233</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>5463</contig_pos>
        <strand></strand>
        <context>gttaaacgag[G/A]catagggtag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAG</left_flank>
        <right_flank>CATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAATAACTAACTAGTTTAGCAAGTTTCGATTTTTCGTCTAGATTATTTGGCTCATAACTACCTTCAAACTTAATATTTTTGATCAAACTAAAAATTAAAATGTAGATATTGACAAGAGCTGCAAAATGACATATAATTCAACTATATTCATGACATGGCTTCGCGAATCAGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTACTCCTTTAAAACAATCATATATTCCAGTGCTTGCCACATCCCC</canonical>
            <polymorphic>AACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGRCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAATAACTAACTAGTTTAGCAAGTTTCGATTTTTCGTCTAGATTATTTGGCTCATAACTACCTTCAAACTTAATATTTTTGATCAAACTAAAAATTAAAATGTAGATATTGACAAGAGCTGCAAAATGACATATAATTCAACTATATTCATGACATGGCTTCGCGAATCAGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTACTCCTTTAAAACAATCATATATTCCAGTGCTTGCCACATCCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGTACTTATCTTCAACCACAA</pcr_primer_p1>
		<pcr_primer_p2>TTTATAACTACTCCCCGTCCA</pcr_primer_p2>
		<pcr_amplicon_size>654</pcr_amplicon_size>
		<canonical_amplicon>CATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAA</canonical_amplicon>
		<polymorphic_amplicon>CATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGRCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17234</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>5420</contig_pos>
        <strand></strand>
        <context>aaaatttgct[G/A]aataccgtat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCT</left_flank>
        <right_flank>AATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAATAACTAACTAGTTTAGCAAGTTTCGATTTTTCGTCTAGATTATTTGGCTCATAACTACCTTCAAACTTAATATTTTTGATCAAACTAAAAATTAAAATGTAGATATTGACAAGAGCTGCAAAATGACATATAATTCAACTATATTCATGACATGGCTTCGCGAATCAGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTA</canonical>
            <polymorphic>AGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTRAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAATAACTAACTAGTTTAGCAAGTTTCGATTTTTCGTCTAGATTATTTGGCTCATAACTACCTTCAAACTTAATATTTTTGATCAAACTAAAAATTAAAATGTAGATATTGACAAGAGCTGCAAAATGACATATAATTCAACTATATTCATGACATGGCTTCGCGAATCAGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGTACTTATCTTCAACCACAA</pcr_primer_p1>
		<pcr_primer_p2>TTTATAACTACTCCCCGTCCA</pcr_primer_p2>
		<pcr_amplicon_size>654</pcr_amplicon_size>
		<canonical_amplicon>CATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAA</canonical_amplicon>
		<polymorphic_amplicon>CATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTRAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17258</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>53398</contig_pos>
        <strand>+</strand>
        <context>TCTTTGCAGC[C/T]ACCAACAACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGTCAAAAACTGCCCAAAAAACTCGAAAAATTCGCAATTTCTTTGCAGC</left_flank>
        <right_flank>ACCAACAACAGAAGCACGCTACGTCGCCGACTTCATTTCGCTGTTTGTGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATAGTGCGAAATTCTTTAAAAGTTGTCTAAAATTCATCGAAAATTTATAAAAATTGAAAAAAAGACTTCTTAAAATCGTTAAAAAATGGTCCAAAATTCATGAAAAACAGTCCAAAAGCAAAAACAAAGACCCAAAATTCATGAAAAATGGACCAAAATTCATGGAAAATAGTTCAAAATTCATGAAAATTTGTTCAAAATTCATGAAAAATGGCTCGAAATTCATGAAAAACAGTCCAAAAGCAAGATTTAAAATGAATGGAAAATGGGCCAAAATTCAGGAAAACTGGTGCAAAATTCATGAAAAACAGTCCAAAATGCAAGAAAAATAGCTCAAAATTATCAAAATATGATCAAGAAAAAAGCCAAAAATAGATCGAAATTCATTGAAAATGGTTCAAAATCGATTTTTAAAAATCCAAAAATAAAGAATTTTTGGTCGAAAATGGTCAAAAACTGCCCAAAAAACTCGAAAAATTCGCAATTTCTTTGCAGCTACCAACAACAGAAGCACGCTACGTCGCCGACTTCATTTCGCTGTTTGTGGGCAGAAGAAACACTTGTGAAACCCTTCGGTGAGGAGCGAAAAGAAGAAAAAAGGAGAGCGCTTCCAATATAAAATGCATAATCTTTTTTTTTCGTCGTCGTTTTTTCTGCTTATTTTTGTTGCATTTTTTTTGATCCAGAAGAGCAACAGGCGATTTTTGATATTCATTGCCTTTTTCAGGGGAAATTTGAAGAAAAAACCGGAGCAAATAGACTGAAATTGCATATTTTGGTTAAAAAAAGGATTTATGTGAAAAATTAGAGAAGAAGTCATCAGAAATTGGCTGAAATCGCTGGAAAAACTGTCATTATTCTCCTATTTTTAGCGCCAAAAAACCGGAAATTCGAATTTTTGGACATCTGGAAACACAGAAATCTCTAAAACTTTGAAATTTTCACTCAAAAAACCGGAAAATAATAGATTTTCAATCGAAAAATCGTCATTTTTACC</canonical>
            <polymorphic>AAAATAGTGCGAAATTCTTTAAAAGTTGTCTAAAATTCATCGAAAATTTATAAAAATTGAAAAAAAGACTTCTTAAAATCGTTAAAAAATGGTCCAAAATTCATGAAAAACAGTCCAAAAGCAAAAACAAAGACCCAAAATTCATGAAAAATGGACCAAAATTCATGGAAAATAGTTCAAAATTCATGAAAATTTGTTCAAAATTCATGAAAAATGGCTCGAAATTCATGAAAAACAGTCCAAAAGCAAGATTTAAAATGAATGGAAAATGGGCCAAAATTCAGGAAAACTGGTGCAAAATTCATGAAAAACAGTCCAAAATGCAAGAAAAATAGCTCAAAATTATCAAAATATGATCAAGAAAAAAGCCAAAAATAGATCGAAATTCATTGAAAATGGTTCAAAATCGATTTTTAAAAATCCAAAAATAAAGAATTTTTGGTCGAAAATGGTCAAAAACTGCCCAAAAAACTCGAAAAATTCGCAATTTCTTTGCAGCYACCAACAACAGAAGCACGCTACGTCGCCGACTTCATTTCGCTGTTTGTGGGCAGAAGAAACACTTGTGAAACCCTTCGGTGAGGAGCGAAAAGAAGAAAAAAGGAGAGCGCTTCCAATATAAAATGCATAATCTTTTTTTTTCGTCGTCGTTTTTTCTGCTTATTTTTGTTGCATTTTTTTTGATCCAGAAGAGCAACAGGCGATTTTTGATATTCATTGCCTTTTTCAGGGGAAATTTGAAGAAAAAACCGGAGCAAATAGACTGAAATTGCATATTTTGGTTAAAAAAAGGATTTATGTGAAAAATTAGAGAAGAAGTCATCAGAAATTGGCTGAAATCGCTGGAAAAACTGTCATTATTCTCCTATTTTTAGCGCCAAAAAACCGGAAATTCGAATTTTTGGACATCTGGAAACACAGAAATCTCTAAAACTTTGAAATTTTCACTCAAAAAACCGGAAAATAATAGATTTTCAATCGAAAAATCGTCATTTTTACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>502 335 163</canonical_bands>
                <polymorphic_bands>665 335</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>335 217 167 130 62 56 33</canonical_bands>
                <polymorphic_bands>465 217 167 62 56 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAAGAAAAATAGCTCAAAATTA</pcr_primer_p1>
		<pcr_primer_p2>AGGGTTTCACAAGTGTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GCAAGAAAAATAGCTCAAAATTATCAAAATATGATCAAGAAAAAAGCCAAAAATAGATCGAAATTCATTGAAAATGGTTCAAAATCGATTTTTAAAAATCCAAAAATAAAGAATTTTTGGTCGAAAATGGTCAAAAACTGCCCAAAAAACTCGAAAAATTCGCAATTTCTTTGCAGCTACCAACAACAGAAGCACGCTACGTCGCCGACTTCATTTCGCTGTTTGTGGGCAGAAGAAACACTTGTGAAACCCT</canonical_amplicon>
		<polymorphic_amplicon>GCAAGAAAAATAGCTCAAAATTATCAAAATATGATCAAGAAAAAAGCCAAAAATAGATCGAAATTCATTGAAAATGGTTCAAAATCGATTTTTAAAAATCCAAAAATAAAGAATTTTTGGTCGAAAATGGTCAAAAACTGCCCAAAAAACTCGAAAAATTCGCAATTTCTTTGCAGCYACCAACAACAGAAGCACGCTACGTCGCCGACTTCATTTCGCTGTTTGTGGGCAGAAGAAACACTTGTGAAACCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17259</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>53669</contig_pos>
        <strand>+</strand>
        <context>AGACTGAAAT[C/T]GCATATTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTTTTTCAGGGGAAATTTGAAGAAAAAACCGGAGCAAATAGACTGAAAT</left_flank>
        <right_flank>GCATATTTTGGTTAAAAAAAGGATTTATGTGAAAAATTAGAGAAGAAGTC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCCAAAATTCAGGAAAACTGGTGCAAAATTCATGAAAAACAGTCCAAAATGCAAGAAAAATAGCTCAAAATTATCAAAATATGATCAAGAAAAAAGCCAAAAATAGATCGAAATTCATTGAAAATGGTTCAAAATCGATTTTTAAAAATCCAAAAATAAAGAATTTTTGGTCGAAAATGGTCAAAAACTGCCCAAAAAACTCGAAAAATTCGCAATTTCTTTGCAGCTACCAACAACAGAAGCACGCTACGTCGCCGACTTCATTTCGCTGTTTGTGGGCAGAAGAAACACTTGTGAAACCCTTCGGTGAGGAGCGAAAAGAAGAAAAAAGGAGAGCGCTTCCAATATAAAATGCATAATCTTTTTTTTTCGTCGTCGTTTTTTCTGCTTATTTTTGTTGCATTTTTTTTGATCCAGAAGAGCAACAGGCGATTTTTGATATTCATTGCCTTTTTCAGGGGAAATTTGAAGAAAAAACCGGAGCAAATAGACTGAAATTGCATATTTTGGTTAAAAAAAGGATTTATGTGAAAAATTAGAGAAGAAGTCATCAGAAATTGGCTGAAATCGCTGGAAAAACTGTCATTATTCTCCTATTTTTAGCGCCAAAAAACCGGAAATTCGAATTTTTGGACATCTGGAAACACAGAAATCTCTAAAACTTTGAAATTTTCACTCAAAAAACCGGAAAATAATAGATTTTCAATCGAAAAATCGTCATTTTTACCGATTTTGGCGCCTGAAACTCCGAAAATTTGATTTTCGGACATCTGGAAACATAGATAGGCAACTTTTTTATAGTTTTAGAATCTACAGTAATCTTGAAAATTCGAAAAAATGACTGAAAATCATAAAATTCAGACAAGAAATGGTAATTTTCCCTTAGTGTTTGGTAAAAATCACTATTTTTCTCAATTTTTGGCTCAAAAATGTCGGAAAATCGATTTTTGACAATTTTGGGACATCTGGAAACACATAAACACAAAAAATTTATAAATT</canonical>
            <polymorphic>GGCCAAAATTCAGGAAAACTGGTGCAAAATTCATGAAAAACAGTCCAAAATGCAAGAAAAATAGCTCAAAATTATCAAAATATGATCAAGAAAAAAGCCAAAAATAGATCGAAATTCATTGAAAATGGTTCAAAATCGATTTTTAAAAATCCAAAAATAAAGAATTTTTGGTCGAAAATGGTCAAAAACTGCCCAAAAAACTCGAAAAATTCGCAATTTCTTTGCAGCTACCAACAACAGAAGCACGCTACGTCGCCGACTTCATTTCGCTGTTTGTGGGCAGAAGAAACACTTGTGAAACCCTTCGGTGAGGAGCGAAAAGAAGAAAAAAGGAGAGCGCTTCCAATATAAAATGCATAATCTTTTTTTTTCGTCGTCGTTTTTTCTGCTTATTTTTGTTGCATTTTTTTTGATCCAGAAGAGCAACAGGCGATTTTTGATATTCATTGCCTTTTTCAGGGGAAATTTGAAGAAAAAACCGGAGCAAATAGACTGAAATYGCATATTTTGGTTAAAAAAAGGATTTATGTGAAAAATTAGAGAAGAAGTCATCAGAAATTGGCTGAAATCGCTGGAAAAACTGTCATTATTCTCCTATTTTTAGCGCCAAAAAACCGGAAATTCGAATTTTTGGACATCTGGAAACACAGAAATCTCTAAAACTTTGAAATTTTCACTCAAAAAACCGGAAAATAATAGATTTTCAATCGAAAAATCGTCATTTTTACCGATTTTGGCGCCTGAAACTCCGAAAATTTGATTTTCGGACATCTGGAAACATAGATAGGCAACTTTTTTATAGTTTTAGAATCTACAGTAATCTTGAAAATTCGAAAAAATGACTGAAAATCATAAAATTCAGACAAGAAATGGTAATTTTCCCTTAGTGTTTGGTAAAAATCACTATTTTTCTCAATTTTTGGCTCAAAAATGTCGGAAAATCGATTTTTGACAATTTTGGGACATCTGGAAACACATAAACACAAAAAATTTATAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>499 172 131 100 46 28 24</canonical_bands>
                <polymorphic_bands>599 172 131 46 28 24</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>249 85 74 63 50 45 43 43 42 40 39 38 35 33 28 22 21 19 8 7 6 6 4</canonical_bands>
                <polymorphic_bands>249 85 74 71 63 50 45 43 43 42 40 39 35 28 22 21 19 8 7 6 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTGATATTCATTGCCTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAGTTTTAGAGATTTCTGTG</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTGATATTCATTGCCTTTTTCAGGGGAAATTTGAAGAAAAAACCGGAGCAAATAGACTGAAATTGCATATTTTGGTTAAAAAAAGGATTTATGTGAAAAATTAGAGAAGAAGTCATCAGAAATTGGCTGAAATCGCTGGAAAAACTGTCATTATTCTCCTATTTTTAGCGCCAAAAAACCGGAAATTCGAATTTTTGGACATCTGGAAACACAGAAATCTCTAAAACTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTGATATTCATTGCCTTTTTCAGGGGAAATTTGAAGAAAAAACCGGAGCAAATAGACTGAAATYGCATATTTTGGTTAAAAAAAGGATTTATGTGAAAAATTAGAGAAGAAGTCATCAGAAATTGGCTGAAATCGCTGGAAAAACTGTCATTATTCTCCTATTTTTAGCGCCAAAAAACCGGAAATTCGAATTTTTGGACATCTGGAAACACAGAAATCTCTAAAACTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17260</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>53753</contig_pos>
        <strand>+</strand>
        <context>GGAAAAACTG[C/T]CATTATTCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTAGAGAAGAAGTCATCAGAAATTGGCTGAAATCGCTGGAAAAACTG</left_flank>
        <right_flank>CATTATTCTCCTATTTTTAGCGCCAAAAAACCGGAAATTCGAATTTTTGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAAGAAAAAAGCCAAAAATAGATCGAAATTCATTGAAAATGGTTCAAAATCGATTTTTAAAAATCCAAAAATAAAGAATTTTTGGTCGAAAATGGTCAAAAACTGCCCAAAAAACTCGAAAAATTCGCAATTTCTTTGCAGCTACCAACAACAGAAGCACGCTACGTCGCCGACTTCATTTCGCTGTTTGTGGGCAGAAGAAACACTTGTGAAACCCTTCGGTGAGGAGCGAAAAGAAGAAAAAAGGAGAGCGCTTCCAATATAAAATGCATAATCTTTTTTTTTCGTCGTCGTTTTTTCTGCTTATTTTTGTTGCATTTTTTTTGATCCAGAAGAGCAACAGGCGATTTTTGATATTCATTGCCTTTTTCAGGGGAAATTTGAAGAAAAAACCGGAGCAAATAGACTGAAATTGCATATTTTGGTTAAAAAAAGGATTTATGTGAAAAATTAGAGAAGAAGTCATCAGAAATTGGCTGAAATCGCTGGAAAAACTGTCATTATTCTCCTATTTTTAGCGCCAAAAAACCGGAAATTCGAATTTTTGGACATCTGGAAACACAGAAATCTCTAAAACTTTGAAATTTTCACTCAAAAAACCGGAAAATAATAGATTTTCAATCGAAAAATCGTCATTTTTACCGATTTTGGCGCCTGAAACTCCGAAAATTTGATTTTCGGACATCTGGAAACATAGATAGGCAACTTTTTTATAGTTTTAGAATCTACAGTAATCTTGAAAATTCGAAAAAATGACTGAAAATCATAAAATTCAGACAAGAAATGGTAATTTTCCCTTAGTGTTTGGTAAAAATCACTATTTTTCTCAATTTTTGGCTCAAAAATGTCGGAAAATCGATTTTTGACAATTTTGGGACATCTGGAAACACATAAACACAAAAAATTTATAAATTTTCATATTTTTTTAATCGGAAAATTCCGAATTTCAGAGCTAAAAAACAGAATTTCCAGTTTTTTAATTTGAAAATTCCAACAAA</canonical>
            <polymorphic>ATCAAGAAAAAAGCCAAAAATAGATCGAAATTCATTGAAAATGGTTCAAAATCGATTTTTAAAAATCCAAAAATAAAGAATTTTTGGTCGAAAATGGTCAAAAACTGCCCAAAAAACTCGAAAAATTCGCAATTTCTTTGCAGCTACCAACAACAGAAGCACGCTACGTCGCCGACTTCATTTCGCTGTTTGTGGGCAGAAGAAACACTTGTGAAACCCTTCGGTGAGGAGCGAAAAGAAGAAAAAAGGAGAGCGCTTCCAATATAAAATGCATAATCTTTTTTTTTCGTCGTCGTTTTTTCTGCTTATTTTTGTTGCATTTTTTTTGATCCAGAAGAGCAACAGGCGATTTTTGATATTCATTGCCTTTTTCAGGGGAAATTTGAAGAAAAAACCGGAGCAAATAGACTGAAATTGCATATTTTGGTTAAAAAAAGGATTTATGTGAAAAATTAGAGAAGAAGTCATCAGAAATTGGCTGAAATCGCTGGAAAAACTGYCATTATTCTCCTATTTTTAGCGCCAAAAAACCGGAAATTCGAATTTTTGGACATCTGGAAACACAGAAATCTCTAAAACTTTGAAATTTTCACTCAAAAAACCGGAAAATAATAGATTTTCAATCGAAAAATCGTCATTTTTACCGATTTTGGCGCCTGAAACTCCGAAAATTTGATTTTCGGACATCTGGAAACATAGATAGGCAACTTTTTTATAGTTTTAGAATCTACAGTAATCTTGAAAATTCGAAAAAATGACTGAAAATCATAAAATTCAGACAAGAAATGGTAATTTTCCCTTAGTGTTTGGTAAAAATCACTATTTTTCTCAATTTTTGGCTCAAAAATGTCGGAAAATCGATTTTTGACAATTTTGGGACATCTGGAAACACATAAACACAAAAAATTTATAAATTTTCATATTTTTTTAATCGGAAAATTCCGAATTTCAGAGCTAAAAAACAGAATTTCCAGTTTTTTAATTTGAAAATTCCAACAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>498 268 234</canonical_bands>
                <polymorphic_bands>732 268</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTGATATTCATTGCCTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAGTTTTAGAGATTTCTGTG</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTGATATTCATTGCCTTTTTCAGGGGAAATTTGAAGAAAAAACCGGAGCAAATAGACTGAAATTGCATATTTTGGTTAAAAAAAGGATTTATGTGAAAAATTAGAGAAGAAGTCATCAGAAATTGGCTGAAATCGCTGGAAAAACTGTCATTATTCTCCTATTTTTAGCGCCAAAAAACCGGAAATTCGAATTTTTGGACATCTGGAAACACAGAAATCTCTAAAACTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTGATATTCATTGCCTTTTTCAGGGGAAATTTGAAGAAAAAACCGGAGCAAATAGACTGAAATTGCATATTTTGGTTAAAAAAAGGATTTATGTGAAAAATTAGAGAAGAAGTCATCAGAAATTGGCTGAAATCGCTGGAAAAACTGYCATTATTCTCCTATTTTTAGCGCCAAAAAACCGGAAATTCGAATTTTTGGACATCTGGAAACACAGAAATCTCTAAAACTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17261</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>55853</contig_pos>
        <strand>+</strand>
        <context>ATTATTTTTT[A/G]GATTGAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGGAAATTTGAGCTTTTTTGAGGTTCTAGGCGATATTATATTATTTTTT</left_flank>
        <right_flank>GATTGAAAAACGCCAAAAAATCGTATAAAATAGCCAGGAAAAAGCCAAAT</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGGCGCGGACGACAGCTGTACGCAGAGTGGCATTAAGAGTTGTACACTGTCACGGTAGAATACATACTCTGGCCCCGAAAATCCCCAGTAAAATCTCCTGTCCCCCCCCCCCACCATTAAAAACACCTAAATTTCAAGGATTTTTCAGCCAGATTTCGAATTCTCGAAATTCAAATTTTTCCAGCGAATGGTGTGCCGAACGAATCGCCGACAACCGTCAACATTTGTACTTTTATCAGCCGGAACGCGATTTTCGAAGGTAAATTCATTTTATTTTTATTTAAAAAAATGTAATTTTTTTACAAAAAAATGACACAGAAAAATGGAAAAATCGATATTTACAGATTTCTATTCGAGGCTAGCAAATCGTTCGAGCTGGTCAACGACGATAAAGAGTTGGAGGGCGAGGTTGAGGTGAGAGAAAAAAGAGCAATCCATTGGACTAGCCAGGAAATTTGAGCTTTTTTGAGGTTCTAGGCGATATTATATTATTTTTTAGATTGAAAAACGCCAAAAAATCGTATAAAATAGCCAGGAAAAAGCCAAATTTTCAAATTACCGCCAAAGTTCAATAGAGCGTAATTGCATTTTCAAAAAATCTTCATAAAAAATAAGGAATTCCAGATAAAAGGACACTTGGACGGTCCATTGATCACCGTGTTCAACAAAGATCGTTTGTACAAAGCGACATCATAAATGATTACAAGAAGAAGAAGAGGATCTGTATCATTGCTCAGCACTATTTTATCCATTTTTTAAAAATTGTATTGTGTTCTTGTTAGGTTCTGCTGTTCAATTGTGTTTTTTTTTCAAAAATTTGAATTTTGTTTTTTTAATTTTTTGAATTTCGCGCCAAGAAATCTCTACAAATAGGTGACAAGAGGGGACGATGGGTTCAGCATACAGTCGCAACACGTCCGGACGTCGATTTGGCTCATTTGCCAGCGAGCGCACTCGCGAGTCCCGATGTTTCGAAGGACCTGGAAAGTTTGAAATTT</canonical>
            <polymorphic>AAAGGCGCGGACGACAGCTGTACGCAGAGTGGCATTAAGAGTTGTACACTGTCACGGTAGAATACATACTCTGGCCCCGAAAATCCCCAGTAAAATCTCCTGTCCCCCCCCCCCACCATTAAAAACACCTAAATTTCAAGGATTTTTCAGCCAGATTTCGAATTCTCGAAATTCAAATTTTTCCAGCGAATGGTGTGCCGAACGAATCGCCGACAACCGTCAACATTTGTACTTTTATCAGCCGGAACGCGATTTTCGAAGGTAAATTCATTTTATTTTTATTTAAAAAAATGTAATTTTTTTACAAAAAAATGACACAGAAAAATGGAAAAATCGATATTTACAGATTTCTATTCGAGGCTAGCAAATCGTTCGAGCTGGTCAACGACGATAAAGAGTTGGAGGGCGAGGTTGAGGTGAGAGAAAAAAGAGCAATCCATTGGACTAGCCAGGAAATTTGAGCTTTTTTGAGGTTCTAGGCGATATTATATTATTTTTTRGATTGAAAAACGCCAAAAAATCGTATAAAATAGCCAGGAAAAAGCCAAATTTTCAAATTACCGCCAAAGTTCAATAGAGCGTAATTGCATTTTCAAAAAATCTTCATAAAAAATAAGGAATTCCAGATAAAAGGACACTTGGACGGTCCATTGATCACCGTGTTCAACAAAGATCGTTTGTACAAAGCGACATCATAAATGATTACAAGAAGAAGAAGAGGATCTGTATCATTGCTCAGCACTATTTTATCCATTTTTTAAAAATTGTATTGTGTTCTTGTTAGGTTCTGCTGTTCAATTGTGTTTTTTTTTCAAAAATTTGAATTTTGTTTTTTTAATTTTTTGAATTTCGCGCCAAGAAATCTCTACAAATAGGTGACAAGAGGGGACGATGGGTTCAGCATACAGTCGCAACACGTCCGGACGTCGATTTGGCTCATTTGCCAGCGAGCGCACTCGCGAGTCCCGATGTTTCGAAGGACCTGGAAAGTTTGAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTATTCGAGGCTAGCAAAT</pcr_primer_p1>
		<pcr_primer_p2>GAAAATGCAATTACGCTCTATT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTCTATTCGAGGCTAGCAAATCGTTCGAGCTGGTCAACGACGATAAAGAGTTGGAGGGCGAGGTTGAGGTGAGAGAAAAAAGAGCAATCCATTGGACTAGCCAGGAAATTTGAGCTTTTTTGAGGTTCTAGGCGATATTATATTATTTTTTAGATTGAAAAACGCCAAAAAATCGTATAAAATAGCCAGGAAAAAGCCAAATTTTCAAATTACCGCCAAAGTTCAATAGAGCGTAATTGCATTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTCTATTCGAGGCTAGCAAATCGTTCGAGCTGGTCAACGACGATAAAGAGTTGGAGGGCGAGGTTGAGGTGAGAGAAAAAAGAGCAATCCATTGGACTAGCCAGGAAATTTGAGCTTTTTTGAGGTTCTAGGCGATATTATATTATTTTTTRGATTGAAAAACGCCAAAAAATCGTATAAAATAGCCAGGAAAAAGCCAAATTTTCAAATTACCGCCAAAGTTCAATAGAGCGTAATTGCATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17278</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>55650</contig_pos>
        <strand></strand>
        <context>aaaaatgtaw[T/A]ttttttacaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ACGCGATTTTCGAAGGTAAATTCATTTTATTTTTATTTAAAAAAATGTAA</left_flank>
        <right_flank>TTTTTTACAAAAAAATGACACAGAAAAATGGAAAAATCGATATTTACAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCAGCTAAAATTAATTTTAAAAAATTTCAGTAACATGAAATTCCCAAATTTCGTTGATTTTTTGCTTTAAAATTTTGAAAAATGAGCTTAAAGGTGGGGGGGGGGGGNNNNNNNNNNTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACGCGTGAAAAGGAAAAATGTTAGCCAGATTGCATACATAAAGGCGCGGACGACAGCTGTACGCAGAGTGGCATTAAGAGTTGTACACTGTCACGGTAGAATACATACTCTGGCCCCGAAAATCCCCAGTAAAATCTCCTGTCCCCCCCCCCCACCATTAAAAACACCTAAATTTCAAGGATTTTTCAGCCAGATTTCGAATTCTCGAAATTCAAATTTTTCCAGCGAATGGTGTGCCGAACGAATCGCCGACAACCGTCAACATTTGTACTTTTATCAGCCGGAACGCGATTTTCGAAGGTAAATTCATTTTATTTTTATTTAAAAAAATGTAATTTTTTTACAAAAAAATGACACAGAAAAATGGAAAAATCGATATTTACAGATTTCTATTCGAGGCTAGCAAATCGTTCGAGCTGGTCAACGACGATAAAGAGTTGGAGGGCGAGGTTGAGGTGAGAGAAAAAAGAGCAATCCATTGGACTAGCCAGGAAATTTGAGCTTTTTTGAGGTTCTAGGCGATATTATATTATTTTTTAGATTGAAAAACGCCAAAAAATCGTATAAAATAGCCAGGAAAAAGCCAAATTTTCAAATTACCGCCAAAGTTCAATAGAGCGTAATTGCATTTTCAAAAAATCTTCATAAAAAATAAGGAATTCCAGATAAAAGGACACTTGGACGGTCCATTGATCACCGTGTTCAACAAAGATCGTTTGTACAAAGCGACATCATAAATGATTACAAGAAGAAGAAGAGGATCTGTATCATTGCTCAGCACTATTTTATCCATTTTTTAAAAATTGTATTGTGTTCTTGTTAGGTTCTGCTGTTCA</canonical>
            <polymorphic>TTTCAGCTAAAATTAATTTTAAAAAATTTCAGTAACATGAAATTCCCAAATTTCGTTGATTTTTTGCTTTAAAATTTTGAAAAATGAGCTTAAAGGTGGGGGGGGGGGGNNNNNNNNNNTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACGCGTGAAAAGGAAAAATGTTAGCCAGATTGCATACATAAAGGCGCGGACGACAGCTGTACGCAGAGTGGCATTAAGAGTTGTACACTGTCACGGTAGAATACATACTCTGGCCCCGAAAATCCCCAGTAAAATCTCCTGTCCCCCCCCCCCACCATTAAAAACACCTAAATTTCAAGGATTTTTCAGCCAGATTTCGAATTCTCGAAATTCAAATTTTTCCAGCGAATGGTGTGCCGAACGAATCGCCGACAACCGTCAACATTTGTACTTTTATCAGCCGGAACGCGATTTTCGAAGGTAAATTCATTTTATTTTTATTTAAAAAAATGTAAWTTTTTTACAAAAAAATGACACAGAAAAATGGAAAAATCGATATTTACAGATTTCTATTCGAGGCTAGCAAATCGTTCGAGCTGGTCAACGACGATAAAGAGTTGGAGGGCGAGGTTGAGGTGAGAGAAAAAAGAGCAATCCATTGGACTAGCCAGGAAATTTGAGCTTTTTTGAGGTTCTAGGCGATATTATATTATTTTTTAGATTGAAAAACGCCAAAAAATCGTATAAAATAGCCAGGAAAAAGCCAAATTTTCAAATTACCGCCAAAGTTCAATAGAGCGTAATTGCATTTTCAAAAAATCTTCATAAAAAATAAGGAATTCCAGATAAAAGGACACTTGGACGGTCCATTGATCACCGTGTTCAACAAAGATCGTTTGTACAAAGCGACATCATAAATGATTACAAGAAGAAGAAGAGGATCTGTATCATTGCTCAGCACTATTTTATCCATTTTTTAAAAATTGTATTGTGTTCTTGTTAGGTTCTGCTGTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>262 160 144 93 89 36 35 30 29 27 24 16 10 10 9 8 8 6 4</canonical_bands>
                <polymorphic_bands>262 190 144 93 89 36 35 29 27 24 16 10 10 9 8 8 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACACCTAAATTTCAAGGAT</pcr_primer_p1>
		<pcr_primer_p2>TAGCCTCGAATAGAAATCTGTAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAAAACACCTAAATTTCAAGGATTTTTCAGCCAGATTTCGAATTCTCGAAATTCAAATTTTTCCAGCGAATGGTGTGCCGAACGAATCGCCGACAACCGTCAACATTTGTACTTTTATCAGCCGGAACGCGATTTTCGAAGGTAAATTCATTTTATTTTTATTTAAAAAAATGTAATTTTTTTACAAAAAAATGACACAGAAAAATGGAAAAATCGATATTTACAGATTTCTATTCGAGGCTA</canonical_amplicon>
		<polymorphic_amplicon>AAAAACACCTAAATTTCAAGGATTTTTCAGCCAGATTTCGAATTCTCGAAATTCAAATTTTTCCAGCGAATGGTGTGCCGAACGAATCGCCGACAACCGTCAACATTTGTACTTTTATCAGCCGGAACGCGATTTTCGAAGGTAAATTCATTTTATTTTTATTTAAAAAAATGTAAWTTTTTTACAAAAAAATGACACAGAAAAATGGAAAAATCGATATTTACAGATTTCTATTCGAGGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17279</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>55649</contig_pos>
        <strand></strand>
        <context>aaaaaatgta[A/T]wttttttaca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACGCGATTTTCGAAGGTAAATTCATTTTATTTTTATTTAAAAAAATGTA</left_flank>
        <right_flank>TTTTTTTACAAAAAAATGACACAGAAAAATGGAAAAATCGATATTTACAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCAGCTAAAATTAATTTTAAAAAATTTCAGTAACATGAAATTCCCAAATTTCGTTGATTTTTTGCTTTAAAATTTTGAAAAATGAGCTTAAAGGTGGGGGGGGGGGGNNNNNNNNNNTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACGCGTGAAAAGGAAAAATGTTAGCCAGATTGCATACATAAAGGCGCGGACGACAGCTGTACGCAGAGTGGCATTAAGAGTTGTACACTGTCACGGTAGAATACATACTCTGGCCCCGAAAATCCCCAGTAAAATCTCCTGTCCCCCCCCCCCACCATTAAAAACACCTAAATTTCAAGGATTTTTCAGCCAGATTTCGAATTCTCGAAATTCAAATTTTTCCAGCGAATGGTGTGCCGAACGAATCGCCGACAACCGTCAACATTTGTACTTTTATCAGCCGGAACGCGATTTTCGAAGGTAAATTCATTTTATTTTTATTTAAAAAAATGTAATTTTTTTACAAAAAAATGACACAGAAAAATGGAAAAATCGATATTTACAGATTTCTATTCGAGGCTAGCAAATCGTTCGAGCTGGTCAACGACGATAAAGAGTTGGAGGGCGAGGTTGAGGTGAGAGAAAAAAGAGCAATCCATTGGACTAGCCAGGAAATTTGAGCTTTTTTGAGGTTCTAGGCGATATTATATTATTTTTTAGATTGAAAAACGCCAAAAAATCGTATAAAATAGCCAGGAAAAAGCCAAATTTTCAAATTACCGCCAAAGTTCAATAGAGCGTAATTGCATTTTCAAAAAATCTTCATAAAAAATAAGGAATTCCAGATAAAAGGACACTTGGACGGTCCATTGATCACCGTGTTCAACAAAGATCGTTTGTACAAAGCGACATCATAAATGATTACAAGAAGAAGAAGAGGATCTGTATCATTGCTCAGCACTATTTTATCCATTTTTTAAAAATTGTATTGTGTTCTTGTTAGGTTCTGCTGTTC</canonical>
            <polymorphic>TTTTCAGCTAAAATTAATTTTAAAAAATTTCAGTAACATGAAATTCCCAAATTTCGTTGATTTTTTGCTTTAAAATTTTGAAAAATGAGCTTAAAGGTGGGGGGGGGGGGNNNNNNNNNNTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACGCGTGAAAAGGAAAAATGTTAGCCAGATTGCATACATAAAGGCGCGGACGACAGCTGTACGCAGAGTGGCATTAAGAGTTGTACACTGTCACGGTAGAATACATACTCTGGCCCCGAAAATCCCCAGTAAAATCTCCTGTCCCCCCCCCCCACCATTAAAAACACCTAAATTTCAAGGATTTTTCAGCCAGATTTCGAATTCTCGAAATTCAAATTTTTCCAGCGAATGGTGTGCCGAACGAATCGCCGACAACCGTCAACATTTGTACTTTTATCAGCCGGAACGCGATTTTCGAAGGTAAATTCATTTTATTTTTATTTAAAAAAATGTAWTTTTTTTACAAAAAAATGACACAGAAAAATGGAAAAATCGATATTTACAGATTTCTATTCGAGGCTAGCAAATCGTTCGAGCTGGTCAACGACGATAAAGAGTTGGAGGGCGAGGTTGAGGTGAGAGAAAAAAGAGCAATCCATTGGACTAGCCAGGAAATTTGAGCTTTTTTGAGGTTCTAGGCGATATTATATTATTTTTTAGATTGAAAAACGCCAAAAAATCGTATAAAATAGCCAGGAAAAAGCCAAATTTTCAAATTACCGCCAAAGTTCAATAGAGCGTAATTGCATTTTCAAAAAATCTTCATAAAAAATAAGGAATTCCAGATAAAAGGACACTTGGACGGTCCATTGATCACCGTGTTCAACAAAGATCGTTTGTACAAAGCGACATCATAAATGATTACAAGAAGAAGAAGAGGATCTGTATCATTGCTCAGCACTATTTTATCCATTTTTTAAAAATTGTATTGTGTTCTTGTTAGGTTCTGCTGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>262 160 144 93 89 36 34 30 29 27 24 16 11 10 9 8 8 6 4</canonical_bands>
                <polymorphic_bands>262 190 144 93 89 36 34 29 27 24 16 11 10 9 8 8 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACACCTAAATTTCAAGGAT</pcr_primer_p1>
		<pcr_primer_p2>TAGCCTCGAATAGAAATCTGTAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAAAACACCTAAATTTCAAGGATTTTTCAGCCAGATTTCGAATTCTCGAAATTCAAATTTTTCCAGCGAATGGTGTGCCGAACGAATCGCCGACAACCGTCAACATTTGTACTTTTATCAGCCGGAACGCGATTTTCGAAGGTAAATTCATTTTATTTTTATTTAAAAAAATGTAATTTTTTTACAAAAAAATGACACAGAAAAATGGAAAAATCGATATTTACAGATTTCTATTCGAGGCTA</canonical_amplicon>
		<polymorphic_amplicon>AAAAACACCTAAATTTCAAGGATTTTTCAGCCAGATTTCGAATTCTCGAAATTCAAATTTTTCCAGCGAATGGTGTGCCGAACGAATCGCCGACAACCGTCAACATTTGTACTTTTATCAGCCGGAACGCGATTTTCGAAGGTAAATTCATTTTATTTTTATTTAAAAAAATGTAWTTTTTTTACAAAAAAATGACACAGAAAAATGGAAAAATCGATATTTACAGATTTCTATTCGAGGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17306</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>45119</contig_pos>
        <strand></strand>
        <context>cacaaaaagc[G/A]aarraaaaat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATCGGGCTAGCAAGAAAAAAATTGTTGCCCCAAGTACTACACAAAAAGC</left_flank>
        <right_flank>AAGAAAAAATAGCATCTAGTGGATTTGAACCCGGGTAGTCAGTTTCGTAG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAGAAAATTTGCTTTCGTGTCGAGACCCATCGGCATAATTGCATGTTCCTTTAATCGCGAATTGCACAACAAGAAAGAAAATTTTGCAAAACGTCAAGGTTTTTCTCCCATCCTCGCCCACCCCTGAGCGAAAGCATAAAATTTTATTTTCTCAAAATTTTACCAAATTCTTGTAACAGCATGAAAAGTTATTACCTTTCCAATGCCAAAAACCTATAAATAAAATGAATGGCTATTCCATACACCGTAACTGCTATGAATCCACATAGGAGGTCTGAAATTGTGATAATTTGTTTTTAGTAGAGCACATTTGCAAACCTATGAAGAATTCAGCCACAGAAGGAGTTAAGTGCCGACTTTTAACATCGACAACCATGAAAAACGCACTTTTGTAGGTTTGAATGTTCTGGAATTTTAATTTTCACACTTCTGAAAAACCCGCTTTAAAATCGGGCTAGCAAGAAAAAAATTGTTGCCCCAAGTACTACACAAAAAGCGAAGAAAAAATAGCATCTAGTGGATTTGAACCCGGGTAGTCAGTTTCGTAGCCGGGGTGGTTACCAGTTGCGCCAAATGAGCGCAAATCGCGGCGAGTAGCTGTTACTTGCTCACCGGTTGAACGACCGCATCGATCAAAGAAAACAAAAGTGAGCAACAACAAAAATAGGTCATCAAATGGCGATAGGTACCCATAATTTTTGGGGATTCAGTGATAATCAGGTAGATGGATACGGTATTCACAAATGCTGATAAAATCACGGAACAAATTTGAATGGTGGTTTTGACATTGGCGAATGTTTCGATTTGCATTTGAAGTTTGGTTGAAAATGTAACTTTCACTAAAATGGAACATTGAACTTAAAATTGTTTTTTATTAAATGTTATTCCTATAACAGTAATACTATGTAAGCATTAAAATAGATGTTTGGTTTCACAGTAGGACATTTCTAGAAAAAAATAAATAAGAAAAAACGAATAACAGGAAGAAGACAACGGAA</canonical>
            <polymorphic>TAAAGAAAATTTGCTTTCGTGTCGAGACCCATCGGCATAATTGCATGTTCCTTTAATCGCGAATTGCACAACAAGAAAGAAAATTTTGCAAAACGTCAAGGTTTTTCTCCCATCCTCGCCCACCCCTGAGCGAAAGCATAAAATTTTATTTTCTCAAAATTTTACCAAATTCTTGTAACAGCATGAAAAGTTATTACCTTTCCAATGCCAAAAACCTATAAATAAAATGAATGGCTATTCCATACACCGTAACTGCTATGAATCCACATAGGAGGTCTGAAATTGTGATAATTTGTTTTTAGTAGAGCACATTTGCAAACCTATGAAGAATTCAGCCACAGAAGGAGTTAAGTGCCGACTTTTAACATCGACAACCATGAAAAACGCACTTTTGTAGGTTTGAATGTTCTGGAATTTTAATTTTCACACTTCTGAAAAACCCGCTTTAAAATCGGGCTAGCAAGAAAAAAATTGTTGCCCCAAGTACTACACAAAAAGCRAAGAAAAAATAGCATCTAGTGGATTTGAACCCGGGTAGTCAGTTTCGTAGCCGGGGTGGTTACCAGTTGCGCCAAATGAGCGCAAATCGCGGCGAGTAGCTGTTACTTGCTCACCGGTTGAACGACCGCATCGATCAAAGAAAACAAAAGTGAGCAACAACAAAAATAGGTCATCAAATGGCGATAGGTACCCATAATTTTTGGGGATTCAGTGATAATCAGGTAGATGGATACGGTATTCACAAATGCTGATAAAATCACGGAACAAATTTGAATGGTGGTTTTGACATTGGCGAATGTTTCGATTTGCATTTGAAGTTTGGTTGAAAATGTAACTTTCACTAAAATGGAACATTGAACTTAAAATTGTTTTTTATTAAATGTTATTCCTATAACAGTAATACTATGTAAGCATTAAAATAGATGTTTGGTTTCACAGTAGGACATTTCTAGAAAAAAATAAATAAGAAAAAACGAATAACAGGAAGAAGACAACGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGGAATTTTAATTTTCACACT</pcr_primer_p1>
		<pcr_primer_p2>GCTCACTTTTGTTTTCTTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTGGAATTTTAATTTTCACACTTCTGAAAAACCCGCTTTAAAATCGGGCTAGCAAGAAAAAAATTGTTGCCCCAAGTACTACACAAAAAGCGAAGAAAAAATAGCATCTAGTGGATTTGAACCCGGGTAGTCAGTTTCGTAGCCGGGGTGGTTACCAGTTGCGCCAAATGAGCGCAAATCGCGGCGAGTAGCTGTTACTTGCTCACCGGTTGAACGACCGCATCGATCAAAGAAAACAAAAGTGAGC</canonical_amplicon>
		<polymorphic_amplicon>TCTGGAATTTTAATTTTCACACTTCTGAAAAACCCGCTTTAAAATCGGGCTAGCAAGAAAAAAATTGTTGCCCCAAGTACTACACAAAAAGCRAAGAAAAAATAGCATCTAGTGGATTTGAACCCGGGTAGTCAGTTTCGTAGCCGGGGTGGTTACCAGTTGCGCCAAATGAGCGCAAATCGCGGCGAGTAGCTGTTACTTGCTCACCGGTTGAACGACCGCATCGATCAAAGAAAACAAAAGTGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17307</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>45122</contig_pos>
        <strand></strand>
        <context>aaaaagcraa[G/A]raaaaatagc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGGGCTAGCAAGAAAAAAATTGTTGCCCCAAGTACTACACAAAAAGCGAA</left_flank>
        <right_flank>AAAAAATAGCATCTAGTGGATTTGAACCCGGGTAGTCAGTTTCGTAGCCG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAAATTTGCTTTCGTGTCGAGACCCATCGGCATAATTGCATGTTCCTTTAATCGCGAATTGCACAACAAGAAAGAAAATTTTGCAAAACGTCAAGGTTTTTCTCCCATCCTCGCCCACCCCTGAGCGAAAGCATAAAATTTTATTTTCTCAAAATTTTACCAAATTCTTGTAACAGCATGAAAAGTTATTACCTTTCCAATGCCAAAAACCTATAAATAAAATGAATGGCTATTCCATACACCGTAACTGCTATGAATCCACATAGGAGGTCTGAAATTGTGATAATTTGTTTTTAGTAGAGCACATTTGCAAACCTATGAAGAATTCAGCCACAGAAGGAGTTAAGTGCCGACTTTTAACATCGACAACCATGAAAAACGCACTTTTGTAGGTTTGAATGTTCTGGAATTTTAATTTTCACACTTCTGAAAAACCCGCTTTAAAATCGGGCTAGCAAGAAAAAAATTGTTGCCCCAAGTACTACACAAAAAGCGAAGAAAAAATAGCATCTAGTGGATTTGAACCCGGGTAGTCAGTTTCGTAGCCGGGGTGGTTACCAGTTGCGCCAAATGAGCGCAAATCGCGGCGAGTAGCTGTTACTTGCTCACCGGTTGAACGACCGCATCGATCAAAGAAAACAAAAGTGAGCAACAACAAAAATAGGTCATCAAATGGCGATAGGTACCCATAATTTTTGGGGATTCAGTGATAATCAGGTAGATGGATACGGTATTCACAAATGCTGATAAAATCACGGAACAAATTTGAATGGTGGTTTTGACATTGGCGAATGTTTCGATTTGCATTTGAAGTTTGGTTGAAAATGTAACTTTCACTAAAATGGAACATTGAACTTAAAATTGTTTTTTATTAAATGTTATTCCTATAACAGTAATACTATGTAAGCATTAAAATAGATGTTTGGTTTCACAGTAGGACATTTCTAGAAAAAAATAAATAAGAAAAAACGAATAACAGGAAGAAGACAACGGAAGTT</canonical>
            <polymorphic>AGAAAATTTGCTTTCGTGTCGAGACCCATCGGCATAATTGCATGTTCCTTTAATCGCGAATTGCACAACAAGAAAGAAAATTTTGCAAAACGTCAAGGTTTTTCTCCCATCCTCGCCCACCCCTGAGCGAAAGCATAAAATTTTATTTTCTCAAAATTTTACCAAATTCTTGTAACAGCATGAAAAGTTATTACCTTTCCAATGCCAAAAACCTATAAATAAAATGAATGGCTATTCCATACACCGTAACTGCTATGAATCCACATAGGAGGTCTGAAATTGTGATAATTTGTTTTTAGTAGAGCACATTTGCAAACCTATGAAGAATTCAGCCACAGAAGGAGTTAAGTGCCGACTTTTAACATCGACAACCATGAAAAACGCACTTTTGTAGGTTTGAATGTTCTGGAATTTTAATTTTCACACTTCTGAAAAACCCGCTTTAAAATCGGGCTAGCAAGAAAAAAATTGTTGCCCCAAGTACTACACAAAAAGCGAARAAAAAATAGCATCTAGTGGATTTGAACCCGGGTAGTCAGTTTCGTAGCCGGGGTGGTTACCAGTTGCGCCAAATGAGCGCAAATCGCGGCGAGTAGCTGTTACTTGCTCACCGGTTGAACGACCGCATCGATCAAAGAAAACAAAAGTGAGCAACAACAAAAATAGGTCATCAAATGGCGATAGGTACCCATAATTTTTGGGGATTCAGTGATAATCAGGTAGATGGATACGGTATTCACAAATGCTGATAAAATCACGGAACAAATTTGAATGGTGGTTTTGACATTGGCGAATGTTTCGATTTGCATTTGAAGTTTGGTTGAAAATGTAACTTTCACTAAAATGGAACATTGAACTTAAAATTGTTTTTTATTAAATGTTATTCCTATAACAGTAATACTATGTAAGCATTAAAATAGATGTTTGGTTTCACAGTAGGACATTTCTAGAAAAAAATAAATAAGAAAAAACGAATAACAGGAAGAAGACAACGGAAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGGAATTTTAATTTTCACACT</pcr_primer_p1>
		<pcr_primer_p2>GCTCACTTTTGTTTTCTTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTGGAATTTTAATTTTCACACTTCTGAAAAACCCGCTTTAAAATCGGGCTAGCAAGAAAAAAATTGTTGCCCCAAGTACTACACAAAAAGCGAAGAAAAAATAGCATCTAGTGGATTTGAACCCGGGTAGTCAGTTTCGTAGCCGGGGTGGTTACCAGTTGCGCCAAATGAGCGCAAATCGCGGCGAGTAGCTGTTACTTGCTCACCGGTTGAACGACCGCATCGATCAAAGAAAACAAAAGTGAGC</canonical_amplicon>
		<polymorphic_amplicon>TCTGGAATTTTAATTTTCACACTTCTGAAAAACCCGCTTTAAAATCGGGCTAGCAAGAAAAAAATTGTTGCCCCAAGTACTACACAAAAAGCGAARAAAAAATAGCATCTAGTGGATTTGAACCCGGGTAGTCAGTTTCGTAGCCGGGGTGGTTACCAGTTGCGCCAAATGAGCGCAAATCGCGGCGAGTAGCTGTTACTTGCTCACCGGTTGAACGACCGCATCGATCAAAGAAAACAAAAGTGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17308</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>45123</contig_pos>
        <strand></strand>
        <context>aaaagcraar[A/G]aaaaatagca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGCTAGCAAGAAAAAAATTGTTGCCCCAAGTACTACACAAAAAGCGAAG</left_flank>
        <right_flank>AAAAATAGCATCTAGTGGATTTGAACCCGGGTAGTCAGTTTCGTAGCCGG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAATTTGCTTTCGTGTCGAGACCCATCGGCATAATTGCATGTTCCTTTAATCGCGAATTGCACAACAAGAAAGAAAATTTTGCAAAACGTCAAGGTTTTTCTCCCATCCTCGCCCACCCCTGAGCGAAAGCATAAAATTTTATTTTCTCAAAATTTTACCAAATTCTTGTAACAGCATGAAAAGTTATTACCTTTCCAATGCCAAAAACCTATAAATAAAATGAATGGCTATTCCATACACCGTAACTGCTATGAATCCACATAGGAGGTCTGAAATTGTGATAATTTGTTTTTAGTAGAGCACATTTGCAAACCTATGAAGAATTCAGCCACAGAAGGAGTTAAGTGCCGACTTTTAACATCGACAACCATGAAAAACGCACTTTTGTAGGTTTGAATGTTCTGGAATTTTAATTTTCACACTTCTGAAAAACCCGCTTTAAAATCGGGCTAGCAAGAAAAAAATTGTTGCCCCAAGTACTACACAAAAAGCGAAGAAAAAATAGCATCTAGTGGATTTGAACCCGGGTAGTCAGTTTCGTAGCCGGGGTGGTTACCAGTTGCGCCAAATGAGCGCAAATCGCGGCGAGTAGCTGTTACTTGCTCACCGGTTGAACGACCGCATCGATCAAAGAAAACAAAAGTGAGCAACAACAAAAATAGGTCATCAAATGGCGATAGGTACCCATAATTTTTGGGGATTCAGTGATAATCAGGTAGATGGATACGGTATTCACAAATGCTGATAAAATCACGGAACAAATTTGAATGGTGGTTTTGACATTGGCGAATGTTTCGATTTGCATTTGAAGTTTGGTTGAAAATGTAACTTTCACTAAAATGGAACATTGAACTTAAAATTGTTTTTTATTAAATGTTATTCCTATAACAGTAATACTATGTAAGCATTAAAATAGATGTTTGGTTTCACAGTAGGACATTTCTAGAAAAAAATAAATAAGAAAAAACGAATAACAGGAAGAAGACAACGGAAGTTA</canonical>
            <polymorphic>GAAAATTTGCTTTCGTGTCGAGACCCATCGGCATAATTGCATGTTCCTTTAATCGCGAATTGCACAACAAGAAAGAAAATTTTGCAAAACGTCAAGGTTTTTCTCCCATCCTCGCCCACCCCTGAGCGAAAGCATAAAATTTTATTTTCTCAAAATTTTACCAAATTCTTGTAACAGCATGAAAAGTTATTACCTTTCCAATGCCAAAAACCTATAAATAAAATGAATGGCTATTCCATACACCGTAACTGCTATGAATCCACATAGGAGGTCTGAAATTGTGATAATTTGTTTTTAGTAGAGCACATTTGCAAACCTATGAAGAATTCAGCCACAGAAGGAGTTAAGTGCCGACTTTTAACATCGACAACCATGAAAAACGCACTTTTGTAGGTTTGAATGTTCTGGAATTTTAATTTTCACACTTCTGAAAAACCCGCTTTAAAATCGGGCTAGCAAGAAAAAAATTGTTGCCCCAAGTACTACACAAAAAGCGAAGRAAAAATAGCATCTAGTGGATTTGAACCCGGGTAGTCAGTTTCGTAGCCGGGGTGGTTACCAGTTGCGCCAAATGAGCGCAAATCGCGGCGAGTAGCTGTTACTTGCTCACCGGTTGAACGACCGCATCGATCAAAGAAAACAAAAGTGAGCAACAACAAAAATAGGTCATCAAATGGCGATAGGTACCCATAATTTTTGGGGATTCAGTGATAATCAGGTAGATGGATACGGTATTCACAAATGCTGATAAAATCACGGAACAAATTTGAATGGTGGTTTTGACATTGGCGAATGTTTCGATTTGCATTTGAAGTTTGGTTGAAAATGTAACTTTCACTAAAATGGAACATTGAACTTAAAATTGTTTTTTATTAAATGTTATTCCTATAACAGTAATACTATGTAAGCATTAAAATAGATGTTTGGTTTCACAGTAGGACATTTCTAGAAAAAAATAAATAAGAAAAAACGAATAACAGGAAGAAGACAACGGAAGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGGAATTTTAATTTTCACACT</pcr_primer_p1>
		<pcr_primer_p2>GCTCACTTTTGTTTTCTTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTGGAATTTTAATTTTCACACTTCTGAAAAACCCGCTTTAAAATCGGGCTAGCAAGAAAAAAATTGTTGCCCCAAGTACTACACAAAAAGCGAAGAAAAAATAGCATCTAGTGGATTTGAACCCGGGTAGTCAGTTTCGTAGCCGGGGTGGTTACCAGTTGCGCCAAATGAGCGCAAATCGCGGCGAGTAGCTGTTACTTGCTCACCGGTTGAACGACCGCATCGATCAAAGAAAACAAAAGTGAGC</canonical_amplicon>
		<polymorphic_amplicon>TCTGGAATTTTAATTTTCACACTTCTGAAAAACCCGCTTTAAAATCGGGCTAGCAAGAAAAAAATTGTTGCCCCAAGTACTACACAAAAAGCGAAGRAAAAATAGCATCTAGTGGATTTGAACCCGGGTAGTCAGTTTCGTAGCCGGGGTGGTTACCAGTTGCGCCAAATGAGCGCAAATCGCGGCGAGTAGCTGTTACTTGCTCACCGGTTGAACGACCGCATCGATCAAAGAAAACAAAAGTGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17309</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>45188</contig_pos>
        <strand>+</strand>
        <context>GTTACCAGTT[A/G]CGCCAAATGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGGATTTGAACCCGGGTAGTCAGTTTCGTAGCCGGGGTGGTTACCAGTT</left_flank>
        <right_flank>CGCCAAATGAGCGCAAATCGCGGCGAGTAGCTGTTACTTGCTCACCGGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAAGAAAGAAAATTTTGCAAAACGTCAAGGTTTTTCTCCCATCCTCGCCCACCCCTGAGCGAAAGCATAAAATTTTATTTTCTCAAAATTTTACCAAATTCTTGTAACAGCATGAAAAGTTATTACCTTTCCAATGCCAAAAACCTATAAATAAAATGAATGGCTATTCCATACACCGTAACTGCTATGAATCCACATAGGAGGTCTGAAATTGTGATAATTTGTTTTTAGTAGAGCACATTTGCAAACCTATGAAGAATTCAGCCACAGAAGGAGTTAAGTGCCGACTTTTAACATCGACAACCATGAAAAACGCACTTTTGTAGGTTTGAATGTTCTGGAATTTTAATTTTCACACTTCTGAAAAACCCGCTTTAAAATCGGGCTAGCAAGAAAAAAATTGTTGCCCCAAGTACTACACAAAAAGCGAAGAAAAAATAGCATCTAGTGGATTTGAACCCGGGTAGTCAGTTTCGTAGCCGGGGTGGTTACCAGTTGCGCCAAATGAGCGCAAATCGCGGCGAGTAGCTGTTACTTGCTCACCGGTTGAACGACCGCATCGATCAAAGAAAACAAAAGTGAGCAACAACAAAAATAGGTCATCAAATGGCGATAGGTACCCATAATTTTTGGGGATTCAGTGATAATCAGGTAGATGGATACGGTATTCACAAATGCTGATAAAATCACGGAACAAATTTGAATGGTGGTTTTGACATTGGCGAATGTTTCGATTTGCATTTGAAGTTTGGTTGAAAATGTAACTTTCACTAAAATGGAACATTGAACTTAAAATTGTTTTTTATTAAATGTTATTCCTATAACAGTAATACTATGTAAGCATTAAAATAGATGTTTGGTTTCACAGTAGGACATTTCTAGAAAAAAATAAATAAGAAAAAACGAATAACAGGAAGAAGACAACGGAAGTTAGACGAAAAAAAAGTAATTAAATTTACCGATTCAGAGAATTCACAAAACATACAGTAGTACGAAGC</canonical>
            <polymorphic>AACAAGAAAGAAAATTTTGCAAAACGTCAAGGTTTTTCTCCCATCCTCGCCCACCCCTGAGCGAAAGCATAAAATTTTATTTTCTCAAAATTTTACCAAATTCTTGTAACAGCATGAAAAGTTATTACCTTTCCAATGCCAAAAACCTATAAATAAAATGAATGGCTATTCCATACACCGTAACTGCTATGAATCCACATAGGAGGTCTGAAATTGTGATAATTTGTTTTTAGTAGAGCACATTTGCAAACCTATGAAGAATTCAGCCACAGAAGGAGTTAAGTGCCGACTTTTAACATCGACAACCATGAAAAACGCACTTTTGTAGGTTTGAATGTTCTGGAATTTTAATTTTCACACTTCTGAAAAACCCGCTTTAAAATCGGGCTAGCAAGAAAAAAATTGTTGCCCCAAGTACTACACAAAAAGCGAAGAAAAAATAGCATCTAGTGGATTTGAACCCGGGTAGTCAGTTTCGTAGCCGGGGTGGTTACCAGTTRCGCCAAATGAGCGCAAATCGCGGCGAGTAGCTGTTACTTGCTCACCGGTTGAACGACCGCATCGATCAAAGAAAACAAAAGTGAGCAACAACAAAAATAGGTCATCAAATGGCGATAGGTACCCATAATTTTTGGGGATTCAGTGATAATCAGGTAGATGGATACGGTATTCACAAATGCTGATAAAATCACGGAACAAATTTGAATGGTGGTTTTGACATTGGCGAATGTTTCGATTTGCATTTGAAGTTTGGTTGAAAATGTAACTTTCACTAAAATGGAACATTGAACTTAAAATTGTTTTTTATTAAATGTTATTCCTATAACAGTAATACTATGTAAGCATTAAAATAGATGTTTGGTTTCACAGTAGGACATTTCTAGAAAAAAATAAATAAGAAAAAACGAATAACAGGAAGAAGACAACGGAAGTTAGACGAAAAAAAAGTAATTAAATTTACCGATTCAGAGAATTCACAAAACATACAGTAGTACGAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 487 11</canonical_bands>
                <polymorphic_bands>513 487</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGGAATTTTAATTTTCACACT</pcr_primer_p1>
		<pcr_primer_p2>GCTCACTTTTGTTTTCTTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTGGAATTTTAATTTTCACACTTCTGAAAAACCCGCTTTAAAATCGGGCTAGCAAGAAAAAAATTGTTGCCCCAAGTACTACACAAAAAGCGAAGAAAAAATAGCATCTAGTGGATTTGAACCCGGGTAGTCAGTTTCGTAGCCGGGGTGGTTACCAGTTGCGCCAAATGAGCGCAAATCGCGGCGAGTAGCTGTTACTTGCTCACCGGTTGAACGACCGCATCGATCAAAGAAAACAAAAGTGAGC</canonical_amplicon>
		<polymorphic_amplicon>TCTGGAATTTTAATTTTCACACTTCTGAAAAACCCGCTTTAAAATCGGGCTAGCAAGAAAAAAATTGTTGCCCCAAGTACTACACAAAAAGCGAAGAAAAAATAGCATCTAGTGGATTTGAACCCGGGTAGTCAGTTTCGTAGCCGGGGTGGTTACCAGTTRCGCCAAATGAGCGCAAATCGCGGCGAGTAGCTGTTACTTGCTCACCGGTTGAACGACCGCATCGATCAAAGAAAACAAAAGTGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17310</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>45226</contig_pos>
        <strand>+</strand>
        <context>TAGCTGTTAC[A/T]TGCTCACCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGGTTACCAGTTGCGCCAAATGAGCGCAAATCGCGGCGAGTAGCTGTTAC</left_flank>
        <right_flank>TGCTCACCGGTTGAACGACCGCATCGATCAAAGAAAACAAAAGTGAGCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCCATCCTCGCCCACCCCTGAGCGAAAGCATAAAATTTTATTTTCTCAAAATTTTACCAAATTCTTGTAACAGCATGAAAAGTTATTACCTTTCCAATGCCAAAAACCTATAAATAAAATGAATGGCTATTCCATACACCGTAACTGCTATGAATCCACATAGGAGGTCTGAAATTGTGATAATTTGTTTTTAGTAGAGCACATTTGCAAACCTATGAAGAATTCAGCCACAGAAGGAGTTAAGTGCCGACTTTTAACATCGACAACCATGAAAAACGCACTTTTGTAGGTTTGAATGTTCTGGAATTTTAATTTTCACACTTCTGAAAAACCCGCTTTAAAATCGGGCTAGCAAGAAAAAAATTGTTGCCCCAAGTACTACACAAAAAGCGAAGAAAAAATAGCATCTAGTGGATTTGAACCCGGGTAGTCAGTTTCGTAGCCGGGGTGGTTACCAGTTGCGCCAAATGAGCGCAAATCGCGGCGAGTAGCTGTTACTTGCTCACCGGTTGAACGACCGCATCGATCAAAGAAAACAAAAGTGAGCAACAACAAAAATAGGTCATCAAATGGCGATAGGTACCCATAATTTTTGGGGATTCAGTGATAATCAGGTAGATGGATACGGTATTCACAAATGCTGATAAAATCACGGAACAAATTTGAATGGTGGTTTTGACATTGGCGAATGTTTCGATTTGCATTTGAAGTTTGGTTGAAAATGTAACTTTCACTAAAATGGAACATTGAACTTAAAATTGTTTTTTATTAAATGTTATTCCTATAACAGTAATACTATGTAAGCATTAAAATAGATGTTTGGTTTCACAGTAGGACATTTCTAGAAAAAAATAAATAAGAAAAAACGAATAACAGGAAGAAGACAACGGAAGTTAGACGAAAAAAAAGTAATTAAATTTACCGATTCAGAGAATTCACAAAACATACAGTAGTACGAAGCTAGTTGCTTTACAGTGGAATCTATAGAATACTGTAGAT</canonical>
            <polymorphic>TCCCATCCTCGCCCACCCCTGAGCGAAAGCATAAAATTTTATTTTCTCAAAATTTTACCAAATTCTTGTAACAGCATGAAAAGTTATTACCTTTCCAATGCCAAAAACCTATAAATAAAATGAATGGCTATTCCATACACCGTAACTGCTATGAATCCACATAGGAGGTCTGAAATTGTGATAATTTGTTTTTAGTAGAGCACATTTGCAAACCTATGAAGAATTCAGCCACAGAAGGAGTTAAGTGCCGACTTTTAACATCGACAACCATGAAAAACGCACTTTTGTAGGTTTGAATGTTCTGGAATTTTAATTTTCACACTTCTGAAAAACCCGCTTTAAAATCGGGCTAGCAAGAAAAAAATTGTTGCCCCAAGTACTACACAAAAAGCGAAGAAAAAATAGCATCTAGTGGATTTGAACCCGGGTAGTCAGTTTCGTAGCCGGGGTGGTTACCAGTTGCGCCAAATGAGCGCAAATCGCGGCGAGTAGCTGTTACWTGCTCACCGGTTGAACGACCGCATCGATCAAAGAAAACAAAAGTGAGCAACAACAAAAATAGGTCATCAAATGGCGATAGGTACCCATAATTTTTGGGGATTCAGTGATAATCAGGTAGATGGATACGGTATTCACAAATGCTGATAAAATCACGGAACAAATTTGAATGGTGGTTTTGACATTGGCGAATGTTTCGATTTGCATTTGAAGTTTGGTTGAAAATGTAACTTTCACTAAAATGGAACATTGAACTTAAAATTGTTTTTTATTAAATGTTATTCCTATAACAGTAATACTATGTAAGCATTAAAATAGATGTTTGGTTTCACAGTAGGACATTTCTAGAAAAAAATAAATAAGAAAAAACGAATAACAGGAAGAAGACAACGGAAGTTAGACGAAAAAAAAGTAATTAAATTTACCGATTCAGAGAATTCACAAAACATACAGTAGTACGAAGCTAGTTGCTTTACAGTGGAATCTATAGAATACTGTAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGGAATTTTAATTTTCACACTT</pcr_primer_p1>
		<pcr_primer_p2>TGTTGCTCACTTTTGTTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTGGAATTTTAATTTTCACACTTCTGAAAAACCCGCTTTAAAATCGGGCTAGCAAGAAAAAAATTGTTGCCCCAAGTACTACACAAAAAGCGAAGAAAAAATAGCATCTAGTGGATTTGAACCCGGGTAGTCAGTTTCGTAGCCGGGGTGGTTACCAGTTGCGCCAAATGAGCGCAAATCGCGGCGAGTAGCTGTTACTTGCTCACCGGTTGAACGACCGCATCGATCAAAGAAAACAAAAGTGAGCAACA</canonical_amplicon>
		<polymorphic_amplicon>CTGGAATTTTAATTTTCACACTTCTGAAAAACCCGCTTTAAAATCGGGCTAGCAAGAAAAAAATTGTTGCCCCAAGTACTACACAAAAAGCGAAGAAAAAATAGCATCTAGTGGATTTGAACCCGGGTAGTCAGTTTCGTAGCCGGGGTGGTTACCAGTTGCGCCAAATGAGCGCAAATCGCGGCGAGTAGCTGTTACWTGCTCACCGGTTGAACGACCGCATCGATCAAAGAAAACAAAAGTGAGCAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17311</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>45329</contig_pos>
        <strand>+</strand>
        <context>TTTGGGGATT[C/T]AGTGATAATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAAAAATAGGTCATCAAATGGCGATAGGTACCCATAATTTTTGGGGATT</left_flank>
        <right_flank>AGTGATAATCAGGTAGATGGATACGGTATTCACAAATGCTGATAAAATCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACCTATAAATAAAATGAATGGCTATTCCATACACCGTAACTGCTATGAATCCACATAGGAGGTCTGAAATTGTGATAATTTGTTTTTAGTAGAGCACATTTGCAAACCTATGAAGAATTCAGCCACAGAAGGAGTTAAGTGCCGACTTTTAACATCGACAACCATGAAAAACGCACTTTTGTAGGTTTGAATGTTCTGGAATTTTAATTTTCACACTTCTGAAAAACCCGCTTTAAAATCGGGCTAGCAAGAAAAAAATTGTTGCCCCAAGTACTACACAAAAAGCGAAGAAAAAATAGCATCTAGTGGATTTGAACCCGGGTAGTCAGTTTCGTAGCCGGGGTGGTTACCAGTTGCGCCAAATGAGCGCAAATCGCGGCGAGTAGCTGTTACTTGCTCACCGGTTGAACGACCGCATCGATCAAAGAAAACAAAAGTGAGCAACAACAAAAATAGGTCATCAAATGGCGATAGGTACCCATAATTTTTGGGGATTCAGTGATAATCAGGTAGATGGATACGGTATTCACAAATGCTGATAAAATCACGGAACAAATTTGAATGGTGGTTTTGACATTGGCGAATGTTTCGATTTGCATTTGAAGTTTGGTTGAAAATGTAACTTTCACTAAAATGGAACATTGAACTTAAAATTGTTTTTTATTAAATGTTATTCCTATAACAGTAATACTATGTAAGCATTAAAATAGATGTTTGGTTTCACAGTAGGACATTTCTAGAAAAAAATAAATAAGAAAAAACGAATAACAGGAAGAAGACAACGGAAGTTAGACGAAAAAAAAGTAATTAAATTTACCGATTCAGAGAATTCACAAAACATACAGTAGTACGAAGCTAGTTGCTTTACAGTGGAATCTATAGAATACTGTAGATGTGTATACAAAATCAGAGATTTAAAAAGTAAATAAGATTGAAAAATTCCGAAATATAATTCAATAAAAATATGAAGTTTACAAGATTCACCCATGCTGAAGAT</canonical>
            <polymorphic>AAAACCTATAAATAAAATGAATGGCTATTCCATACACCGTAACTGCTATGAATCCACATAGGAGGTCTGAAATTGTGATAATTTGTTTTTAGTAGAGCACATTTGCAAACCTATGAAGAATTCAGCCACAGAAGGAGTTAAGTGCCGACTTTTAACATCGACAACCATGAAAAACGCACTTTTGTAGGTTTGAATGTTCTGGAATTTTAATTTTCACACTTCTGAAAAACCCGCTTTAAAATCGGGCTAGCAAGAAAAAAATTGTTGCCCCAAGTACTACACAAAAAGCGAAGAAAAAATAGCATCTAGTGGATTTGAACCCGGGTAGTCAGTTTCGTAGCCGGGGTGGTTACCAGTTGCGCCAAATGAGCGCAAATCGCGGCGAGTAGCTGTTACTTGCTCACCGGTTGAACGACCGCATCGATCAAAGAAAACAAAAGTGAGCAACAACAAAAATAGGTCATCAAATGGCGATAGGTACCCATAATTTTTGGGGATTYAGTGATAATCAGGTAGATGGATACGGTATTCACAAATGCTGATAAAATCACGGAACAAATTTGAATGGTGGTTTTGACATTGGCGAATGTTTCGATTTGCATTTGAAGTTTGGTTGAAAATGTAACTTTCACTAAAATGGAACATTGAACTTAAAATTGTTTTTTATTAAATGTTATTCCTATAACAGTAATACTATGTAAGCATTAAAATAGATGTTTGGTTTCACAGTAGGACATTTCTAGAAAAAAATAAATAAGAAAAAACGAATAACAGGAAGAAGACAACGGAAGTTAGACGAAAAAAAAGTAATTAAATTTACCGATTCAGAGAATTCACAAAACATACAGTAGTACGAAGCTAGTTGCTTTACAGTGGAATCTATAGAATACTGTAGATGTGTATACAAAATCAGAGATTTAAAAAGTAAATAAGATTGAAAAATTCCGAAATATAATTCAATAAAAATATGAAGTTTACAAGATTCACCCATGCTGAAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>446 326 105 54 50 19</canonical_bands>
                <polymorphic_bands>772 105 54 50 19</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>446 326 105 54 50 19</canonical_bands>
                <polymorphic_bands>772 105 54 50 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCGATCAAAGAAAACAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTTTAAGTTCAATGTTCCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>ATCGATCAAAGAAAACAAAAGTGAGCAACAACAAAAATAGGTCATCAAATGGCGATAGGTACCCATAATTTTTGGGGATTCAGTGATAATCAGGTAGATGGATACGGTATTCACAAATGCTGATAAAATCACGGAACAAATTTGAATGGTGGTTTTGACATTGGCGAATGTTTCGATTTGCATTTGAAGTTTGGTTGAAAATGTAACTTTCACTAAAATGGAACATTGAACTTAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATCGATCAAAGAAAACAAAAGTGAGCAACAACAAAAATAGGTCATCAAATGGCGATAGGTACCCATAATTTTTGGGGATTYAGTGATAATCAGGTAGATGGATACGGTATTCACAAATGCTGATAAAATCACGGAACAAATTTGAATGGTGGTTTTGACATTGGCGAATGTTTCGATTTGCATTTGAAGTTTGGTTGAAAATGTAACTTTCACTAAAATGGAACATTGAACTTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17312</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>45381</contig_pos>
        <strand>+</strand>
        <context>ATAAAATCAC[G/T]GAACAAATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGATAATCAGGTAGATGGATACGGTATTCACAAATGCTGATAAAATCAC</left_flank>
        <right_flank>GAACAAATTTGAATGGTGGTTTTGACATTGGCGAATGTTTCGATTTGCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCACATAGGAGGTCTGAAATTGTGATAATTTGTTTTTAGTAGAGCACATTTGCAAACCTATGAAGAATTCAGCCACAGAAGGAGTTAAGTGCCGACTTTTAACATCGACAACCATGAAAAACGCACTTTTGTAGGTTTGAATGTTCTGGAATTTTAATTTTCACACTTCTGAAAAACCCGCTTTAAAATCGGGCTAGCAAGAAAAAAATTGTTGCCCCAAGTACTACACAAAAAGCGAAGAAAAAATAGCATCTAGTGGATTTGAACCCGGGTAGTCAGTTTCGTAGCCGGGGTGGTTACCAGTTGCGCCAAATGAGCGCAAATCGCGGCGAGTAGCTGTTACTTGCTCACCGGTTGAACGACCGCATCGATCAAAGAAAACAAAAGTGAGCAACAACAAAAATAGGTCATCAAATGGCGATAGGTACCCATAATTTTTGGGGATTCAGTGATAATCAGGTAGATGGATACGGTATTCACAAATGCTGATAAAATCACGGAACAAATTTGAATGGTGGTTTTGACATTGGCGAATGTTTCGATTTGCATTTGAAGTTTGGTTGAAAATGTAACTTTCACTAAAATGGAACATTGAACTTAAAATTGTTTTTTATTAAATGTTATTCCTATAACAGTAATACTATGTAAGCATTAAAATAGATGTTTGGTTTCACAGTAGGACATTTCTAGAAAAAAATAAATAAGAAAAAACGAATAACAGGAAGAAGACAACGGAAGTTAGACGAAAAAAAAGTAATTAAATTTACCGATTCAGAGAATTCACAAAACATACAGTAGTACGAAGCTAGTTGCTTTACAGTGGAATCTATAGAATACTGTAGATGTGTATACAAAATCAGAGATTTAAAAAGTAAATAAGATTGAAAAATTCCGAAATATAATTCAATAAAAATATGAAGTTTACAAGATTCACCCATGCTGAAGATCAGTAAATTTTGTTTGGCTGATGATGTGTGACTCAATATATTTTTTCAAGCC</canonical>
            <polymorphic>TCCACATAGGAGGTCTGAAATTGTGATAATTTGTTTTTAGTAGAGCACATTTGCAAACCTATGAAGAATTCAGCCACAGAAGGAGTTAAGTGCCGACTTTTAACATCGACAACCATGAAAAACGCACTTTTGTAGGTTTGAATGTTCTGGAATTTTAATTTTCACACTTCTGAAAAACCCGCTTTAAAATCGGGCTAGCAAGAAAAAAATTGTTGCCCCAAGTACTACACAAAAAGCGAAGAAAAAATAGCATCTAGTGGATTTGAACCCGGGTAGTCAGTTTCGTAGCCGGGGTGGTTACCAGTTGCGCCAAATGAGCGCAAATCGCGGCGAGTAGCTGTTACTTGCTCACCGGTTGAACGACCGCATCGATCAAAGAAAACAAAAGTGAGCAACAACAAAAATAGGTCATCAAATGGCGATAGGTACCCATAATTTTTGGGGATTCAGTGATAATCAGGTAGATGGATACGGTATTCACAAATGCTGATAAAATCACKGAACAAATTTGAATGGTGGTTTTGACATTGGCGAATGTTTCGATTTGCATTTGAAGTTTGGTTGAAAATGTAACTTTCACTAAAATGGAACATTGAACTTAAAATTGTTTTTTATTAAATGTTATTCCTATAACAGTAATACTATGTAAGCATTAAAATAGATGTTTGGTTTCACAGTAGGACATTTCTAGAAAAAAATAAATAAGAAAAAACGAATAACAGGAAGAAGACAACGGAAGTTAGACGAAAAAAAAGTAATTAAATTTACCGATTCAGAGAATTCACAAAACATACAGTAGTACGAAGCTAGTTGCTTTACAGTGGAATCTATAGAATACTGTAGATGTGTATACAAAATCAGAGATTTAAAAAGTAAATAAGATTGAAAAATTCCGAAATATAATTCAATAAAAATATGAAGTTTACAAGATTCACCCATGCTGAAGATCAGTAAATTTTGTTTGGCTGATGATGTGTGACTCAATATATTTTTTCAAGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGATCAAAGAAAACAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTTTAAGTTCAATGTTCCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>ATCGATCAAAGAAAACAAAAGTGAGCAACAACAAAAATAGGTCATCAAATGGCGATAGGTACCCATAATTTTTGGGGATTCAGTGATAATCAGGTAGATGGATACGGTATTCACAAATGCTGATAAAATCACGGAACAAATTTGAATGGTGGTTTTGACATTGGCGAATGTTTCGATTTGCATTTGAAGTTTGGTTGAAAATGTAACTTTCACTAAAATGGAACATTGAACTTAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATCGATCAAAGAAAACAAAAGTGAGCAACAACAAAAATAGGTCATCAAATGGCGATAGGTACCCATAATTTTTGGGGATTCAGTGATAATCAGGTAGATGGATACGGTATTCACAAATGCTGATAAAATCACKGAACAAATTTGAATGGTGGTTTTGACATTGGCGAATGTTTCGATTTGCATTTGAAGTTTGGTTGAAAATGTAACTTTCACTAAAATGGAACATTGAACTTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17313</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>48362</contig_pos>
        <strand>+</strand>
        <context>AAATTTGATT[A/T]ATTAAGTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGCTATTCCAAAACTTCCACATAACGCATCTAAAAATTCAAAATTTGATT</left_flank>
        <right_flank>ATTAAGTTGAAAATTTCAAAAACTTACAAACTGCAAATTTCCCAAACCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAACGATGAAAGATCAATCATGTAGTTTTGTGAATTTCTAATTTGAAACCGAAATATTTTTTTTTTGAAAAAAAACTTCAATTAAAGGCCAATTCAAATACAAGGCTACGAACAATGGGGCAGCCAAGGCCAGCCGCGGCCAAAAAATAGCAAAAAGCTCACCTTATATACTCTGTTTCCATTTTGGTCTTTGGAAAAACGTAGGCGGTCACTAGGAACCACGCGGCTCCGCCCACCAGAGGAATCGAAAACCAAAAAATGAGAAATGCGCCTTTAAAGTATCGAATTCGGCCTTGTCTGAAAAAATCAACATTAAAATCTCAGAATTTCAGAATCCTAAAGTTTCAGATTCTTGGATTTTCAGAATCTCAGAATCTCAGAAGTTTAGAACCTCCTACCTCTCCAAAGCAAAAGATCGATAAACAAAATGAATTGCAATTCCATAAATTGCTATTCCAAAACTTCCACATAACGCATCTAAAAATTCAAAATTTGATTAATTAAGTTGAAAATTTCAAAAACTTACAAACTGCAAATTTCCCAAACCAAGGCGCAAAATTCCTTCTTTTCATATCCACAACCATGAAAAATGCACTTTTGTAGGTTAGGATATTCTGGAAAATCCCTATTAATTACTTAATTACACAAATTAAAATTACCGGCTGCACAATCACATCCAAAATTCCAAAAATCATGGAACAACAGCAAAAATAAACCATAAGATGGCGGTAATTTCCCATATTTTTTGGAGACTTTGTGATAATGAGGGTGATTAAGAGGGAGTTAATTAATAGGGAAGCAATTACAGATATCACTTGGATTGCGAGTTTCACGAGACGATAAGATTCGGTATTCATTTTTCGGTCTTTTTTTTCTGCGCCACAAAAACTTTTCGAATGAAAAAAAAAGAGTGATAATAATGAAATTTTTCGTTTTCTTTCATAAAAACAGAAACCGTAAATGAAGCAGAAGATTCTAATTAGTGAATACGAGACTTTT</canonical>
            <polymorphic>CCAACGATGAAAGATCAATCATGTAGTTTTGTGAATTTCTAATTTGAAACCGAAATATTTTTTTTTTGAAAAAAAACTTCAATTAAAGGCCAATTCAAATACAAGGCTACGAACAATGGGGCAGCCAAGGCCAGCCGCGGCCAAAAAATAGCAAAAAGCTCACCTTATATACTCTGTTTCCATTTTGGTCTTTGGAAAAACGTAGGCGGTCACTAGGAACCACGCGGCTCCGCCCACCAGAGGAATCGAAAACCAAAAAATGAGAAATGCGCCTTTAAAGTATCGAATTCGGCCTTGTCTGAAAAAATCAACATTAAAATCTCAGAATTTCAGAATCCTAAAGTTTCAGATTCTTGGATTTTCAGAATCTCAGAATCTCAGAAGTTTAGAACCTCCTACCTCTCCAAAGCAAAAGATCGATAAACAAAATGAATTGCAATTCCATAAATTGCTATTCCAAAACTTCCACATAACGCATCTAAAAATTCAAAATTTGATTWATTAAGTTGAAAATTTCAAAAACTTACAAACTGCAAATTTCCCAAACCAAGGCGCAAAATTCCTTCTTTTCATATCCACAACCATGAAAAATGCACTTTTGTAGGTTAGGATATTCTGGAAAATCCCTATTAATTACTTAATTACACAAATTAAAATTACCGGCTGCACAATCACATCCAAAATTCCAAAAATCATGGAACAACAGCAAAAATAAACCATAAGATGGCGGTAATTTCCCATATTTTTTGGAGACTTTGTGATAATGAGGGTGATTAAGAGGGAGTTAATTAATAGGGAAGCAATTACAGATATCACTTGGATTGCGAGTTTCACGAGACGATAAGATTCGGTATTCATTTTTCGGTCTTTTTTTTCTGCGCCACAAAAACTTTTCGAATGAAAAAAAAAGAGTGATAATAATGAAATTTTTCGTTTTCTTTCATAAAAACAGAAACCGTAAATGAAGCAGAAGATTCTAATTAGTGAATACGAGACTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>498 211 159 132</canonical_bands>
                <polymorphic_bands>630 211 159</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>211 192 184 128 123 83 39 13 11 8 4 4</canonical_bands>
                <polymorphic_bands>211 192 188 128 123 83 39 13 11 8 4</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAATTAA</site>
                <isoschizomers>
                    <enzyme>PacI</enzyme>
                </isoschizomers>
                <canonical_bands>502 287 211</canonical_bands>
                <polymorphic_bands>789 211</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>194 123 106 74 55 54 50 40 40 37 33 27 24 22 22 15 12 11 9 9 9 8 7 7 6 6</canonical_bands>
                <polymorphic_bands>194 123 106 74 55 54 50 40 40 37 33 27 24 22 22 21 15 11 9 9 8 7 7 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATAAATTGCTATTCCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GCCGGTAATTTTAATTTGTGTA</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>CCATAAATTGCTATTCCAAAACTTCCACATAACGCATCTAAAAATTCAAAATTTGATTAATTAAGTTGAAAATTTCAAAAACTTACAAACTGCAAATTTCCCAAACCAAGGCGCAAAATTCCTTCTTTTCATATCCACAACCATGAAAAATGCACTTTTGTAGGTTAGGATATTCTGGAAAATCCCTATTAATTACTTAATTACACAAATTAAAATTACCGGC</canonical_amplicon>
		<polymorphic_amplicon>CCATAAATTGCTATTCCAAAACTTCCACATAACGCATCTAAAAATTCAAAATTTGATTWATTAAGTTGAAAATTTCAAAAACTTACAAACTGCAAATTTCCCAAACCAAGGCGCAAAATTCCTTCTTTTCATATCCACAACCATGAAAAATGCACTTTTGTAGGTTAGGATATTCTGGAAAATCCCTATTAATTACTTAATTACACAAATTAAAATTACCGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17314</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>48277</contig_pos>
        <strand></strand>
        <context>CAAAGCAAAA[G/A]ATCGATAAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAATCTCAGAATCTCAGAAGTTTAGAACCTCCTACCTCTCCAAAGCAAAA</left_flank>
        <right_flank>ATCGATAAACAAAATGAATTGCAATTCCATAAATTGCTATTCCAAAACTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCATTGTAAGCACAATTGTCAATATCCATGTTGAACGTTTCGTTTACTATTGATCTATGGAAAATCGATTTTTAAAGTCAGGATTCCAACGATGAAAGATCAATCATGTAGTTTTGTGAATTTCTAATTTGAAACCGAAATATTTTTTTTTTGAAAAAAAACTTCAATTAAAGGCCAATTCAAATACAAGGCTACGAACAATGGGGCAGCCAAGGCCAGCCGCGGCCAAAAAATAGCAAAAAGCTCACCTTATATACTCTGTTTCCATTTTGGTCTTTGGAAAAACGTAGGCGGTCACTAGGAACCACGCGGCTCCGCCCACCAGAGGAATCGAAAACCAAAAAATGAGAAATGCGCCTTTAAAGTATCGAATTCGGCCTTGTCTGAAAAAATCAACATTAAAATCTCAGAATTTCAGAATCCTAAAGTTTCAGATTCTTGGATTTTCAGAATCTCAGAATCTCAGAAGTTTAGAACCTCCTACCTCTCCAAAGCAAAAGATCGATAAACAAAATGAATTGCAATTCCATAAATTGCTATTCCAAAACTTCCACATAACGCATCTAAAAATTCAAAATTTGATTAATTAAGTTGAAAATTTCAAAAACTTACAAACTGCAAATTTCCCAAACCAAGGCGCAAAATTCCTTCTTTTCATATCCACAACCATGAAAAATGCACTTTTGTAGGTTAGGATATTCTGGAAAATCCCTATTAATTACTTAATTACACAAATTAAAATTACCGGCTGCACAATCACATCCAAAATTCCAAAAATCATGGAACAACAGCAAAAATAAACCATAAGATGGCGGTAATTTCCCATATTTTTTGGAGACTTTGTGATAATGAGGGTGATTAAGAGGGAGTTAATTAATAGGGAAGCAATTACAGATATCACTTGGATTGCGAGTTTCACGAGACGATAAGATTCGGTATTCATTTTTCGGTCTTTTTTTTCTGCGCCACAAAAACTTTTCGAATGAAAAAAAAAGAGTGA</canonical>
            <polymorphic>GCATTGTAAGCACAATTGTCAATATCCATGTTGAACGTTTCGTTTACTATTGATCTATGGAAAATCGATTTTTAAAGTCAGGATTCCAACGATGAAAGATCAATCATGTAGTTTTGTGAATTTCTAATTTGAAACCGAAATATTTTTTTTTTGAAAAAAAACTTCAATTAAAGGCCAATTCAAATACAAGGCTACGAACAATGGGGCAGCCAAGGCCAGCCGCGGCCAAAAAATAGCAAAAAGCTCACCTTATATACTCTGTTTCCATTTTGGTCTTTGGAAAAACGTAGGCGGTCACTAGGAACCACGCGGCTCCGCCCACCAGAGGAATCGAAAACCAAAAAATGAGAAATGCGCCTTTAAAGTATCGAATTCGGCCTTGTCTGAAAAAATCAACATTAAAATCTCAGAATTTCAGAATCCTAAAGTTTCAGATTCTTGGATTTTCAGAATCTCAGAATCTCAGAAGTTTAGAACCTCCTACCTCTCCAAAGCAAAARATCGATAAACAAAATGAATTGCAATTCCATAAATTGCTATTCCAAAACTTCCACATAACGCATCTAAAAATTCAAAATTTGATTAATTAAGTTGAAAATTTCAAAAACTTACAAACTGCAAATTTCCCAAACCAAGGCGCAAAATTCCTTCTTTTCATATCCACAACCATGAAAAATGCACTTTTGTAGGTTAGGATATTCTGGAAAATCCCTATTAATTACTTAATTACACAAATTAAAATTACCGGCTGCACAATCACATCCAAAATTCCAAAAATCATGGAACAACAGCAAAAATAAACCATAAGATGGCGGTAATTTCCCATATTTTTTGGAGACTTTGTGATAATGAGGGTGATTAAGAGGGAGTTAATTAATAGGGAAGCAATTACAGATATCACTTGGATTGCGAGTTTCACGAGACGATAAGATTCGGTATTCATTTTTCGGTCTTTTTTTTCTGCGCCACAAAAACTTTTCGAATGAAAAAAAAAGAGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>501 402 51 46</canonical_bands>
                <polymorphic_bands>903 51 46</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAATGCGCCTTTAAAGTAT</pcr_primer_p1>
		<pcr_primer_p2>TTGAATTTTTAGATGCGTTATG</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>AGAAATGCGCCTTTAAAGTATCGAATTCGGCCTTGTCTGAAAAAATCAACATTAAAATCTCAGAATTTCAGAATCCTAAAGTTTCAGATTCTTGGATTTTCAGAATCTCAGAATCTCAGAAGTTTAGAACCTCCTACCTCTCCAAAGCAAAAGATCGATAAACAAAATGAATTGCAATTCCATAAATTGCTATTCCAAAACTTCCACATAACGCATCTAAAAATTCAA</canonical_amplicon>
		<polymorphic_amplicon>AGAAATGCGCCTTTAAAGTATCGAATTCGGCCTTGTCTGAAAAAATCAACATTAAAATCTCAGAATTTCAGAATCCTAAAGTTTCAGATTCTTGGATTTTCAGAATCTCAGAATCTCAGAAGTTTAGAACCTCCTACCTCTCCAAAGCAAAARATCGATAAACAAAATGAATTGCAATTCCATAAATTGCTATTCCAAAACTTCCACATAACGCATCTAAAAATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17315</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>77457</contig_pos>
        <strand></strand>
        <context>TCAAACCTTG[A/T]AATATTTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCTTTCCATCTTTTCCAATTTGTAACCTTTTTACCGTTTCTCAAACCTTG</left_flank>
        <right_flank>AATATTTTCTCAAATTGCTTTACTTCAGTTTCAAATAGCTTTACTTTCAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAAGTTTCAGAATTTTAAAAGTTTCAGAATTTCTATAAACCTAAGAACTGGAAAATTGCCTAAAATTTGAAATCCCAAATTGAAAAACAAATTATGTTTTTTCGGTAAACAACAGTTACTCAGTTCTTCCAAATTTTGTGTGTTTTTTTTAAAATCTATTTCCTAAATATCCGAATTTTTCTATCTCTAACAAATTTTTGCACTACTGTATGTCCAACGTATTTGATCATTCGCATCATAGAAAGAAAATGGACTACTAAATATGAAAAGTTTTGAAAAATCGCAGTTTGTTTTTGAACAAGGTCTGATTTTTTTTGTTCTGCTCTTACAGCGTTTCGTAGTAATCTGAAATAGTCTGGGTTTTAAGAATTCAGAAAGTTTCAATTTTCTAATTAGCTTTCCAATTTCATCTTTTGATTTGATTCTCTATGAAGATTTGCTTATTTTCCTTTCCATCTTTTCCAATTTGTAACCTTTTTACCGTTTCTCAAACCTTGAAATATTTTCTCAAATTGCTTTACTTCAGTTTCAAATAGCTTTACTTTCAATACTTTCAAAAAATTAATCATAAAAATAAGAAAAGCCAGACTACTGAATCTGGAAAAATCAGAAAATATTTTCCGAAAACTATACTGTTTCTGTTTCCTTTTCTGTGTTACATTTGAAGCATCTGTTTAGTGATTGGCGTTTTACATTTTCAGTGACTTTGAAAAACGATTTCCAAGATAATCCAATTATTAAGAATTTCGGAAAAAAATTTTTGTTTAAGTTTCCTATGTTATACACATTTTTGGAATTATTTTCCAGTGTTCCACGGCGATACATTACTCAATTTTCTCCCCACTTGCCGATTTTAGATCGTTGTTTTCTTTCAAAATTTCAAAATTTTCCCTCCTCTCTTATTTAATAAATCATCCTCGAACCTTATTCTCTCACTTTTTTTCTGAATAATCGAAATATATTTGGATCATAAAAACTTTGAAAAACTAGACTAATCA</canonical>
            <polymorphic>TAAAAGTTTCAGAATTTTAAAAGTTTCAGAATTTCTATAAACCTAAGAACTGGAAAATTGCCTAAAATTTGAAATCCCAAATTGAAAAACAAATTATGTTTTTTCGGTAAACAACAGTTACTCAGTTCTTCCAAATTTTGTGTGTTTTTTTTAAAATCTATTTCCTAAATATCCGAATTTTTCTATCTCTAACAAATTTTTGCACTACTGTATGTCCAACGTATTTGATCATTCGCATCATAGAAAGAAAATGGACTACTAAATATGAAAAGTTTTGAAAAATCGCAGTTTGTTTTTGAACAAGGTCTGATTTTTTTTGTTCTGCTCTTACAGCGTTTCGTAGTAATCTGAAATAGTCTGGGTTTTAAGAATTCAGAAAGTTTCAATTTTCTAATTAGCTTTCCAATTTCATCTTTTGATTTGATTCTCTATGAAGATTTGCTTATTTTCCTTTCCATCTTTTCCAATTTGTAACCTTTTTACCGTTTCTCAAACCTTGWAATATTTTCTCAAATTGCTTTACTTCAGTTTCAAATAGCTTTACTTTCAATACTTTCAAAAAATTAATCATAAAAATAAGAAAAGCCAGACTACTGAATCTGGAAAAATCAGAAAATATTTTCCGAAAACTATACTGTTTCTGTTTCCTTTTCTGTGTTACATTTGAAGCATCTGTTTAGTGATTGGCGTTTTACATTTTCAGTGACTTTGAAAAACGATTTCCAAGATAATCCAATTATTAAGAATTTCGGAAAAAAATTTTTGTTTAAGTTTCCTATGTTATACACATTTTTGGAATTATTTTCCAGTGTTCCACGGCGATACATTACTCAATTTTCTCCCCACTTGCCGATTTTAGATCGTTGTTTTCTTTCAAAATTTCAAAATTTTCCCTCCTCTCTTATTTAATAAATCATCCTCGAACCTTATTCTCTCACTTTTTTTCTGAATAATCGAAATATATTTGGATCATAAAAACTTTGAAAAACTAGACTAATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGATTTGCTTATTTTCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>CACTAAACAGATGCTTCAAATGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGATTTGCTTATTTTCCTTTCCATCTTTTCCAATTTGTAACCTTTTTACCGTTTCTCAAACCTTGAAATATTTTCTCAAATTGCTTTACTTCAGTTTCAAATAGCTTTACTTTCAATACTTTCAAAAAATTAATCATAAAAATAAGAAAAGCCAGACTACTGAATCTGGAAAAATCAGAAAATATTTTCCGAAAACTATACTGTTTCTGTTTCCTTTTCTGTGTTACATTTGAAGCATCTGTTTAGTG</canonical_amplicon>
		<polymorphic_amplicon>GAAGATTTGCTTATTTTCCTTTCCATCTTTTCCAATTTGTAACCTTTTTACCGTTTCTCAAACCTTGWAATATTTTCTCAAATTGCTTTACTTCAGTTTCAAATAGCTTTACTTTCAATACTTTCAAAAAATTAATCATAAAAATAAGAAAAGCCAGACTACTGAATCTGGAAAAATCAGAAAATATTTTCCGAAAACTATACTGTTTCTGTTTCCTTTTCTGTGTTACATTTGAAGCATCTGTTTAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17316</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>77508</contig_pos>
        <strand></strand>
        <context>TTACTTTCAA[T/A]ACTTTCAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATATTTTCTCAAATTGCTTTACTTCAGTTTCAAATAGCTTTACTTTCAA</left_flank>
        <right_flank>ACTTTCAAAAAATTAATCATAAAAATAAGAAAAGCCAGACTACTGAATCT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAAATTGCCTAAAATTTGAAATCCCAAATTGAAAAACAAATTATGTTTTTTCGGTAAACAACAGTTACTCAGTTCTTCCAAATTTTGTGTGTTTTTTTTAAAATCTATTTCCTAAATATCCGAATTTTTCTATCTCTAACAAATTTTTGCACTACTGTATGTCCAACGTATTTGATCATTCGCATCATAGAAAGAAAATGGACTACTAAATATGAAAAGTTTTGAAAAATCGCAGTTTGTTTTTGAACAAGGTCTGATTTTTTTTGTTCTGCTCTTACAGCGTTTCGTAGTAATCTGAAATAGTCTGGGTTTTAAGAATTCAGAAAGTTTCAATTTTCTAATTAGCTTTCCAATTTCATCTTTTGATTTGATTCTCTATGAAGATTTGCTTATTTTCCTTTCCATCTTTTCCAATTTGTAACCTTTTTACCGTTTCTCAAACCTTGAAATATTTTCTCAAATTGCTTTACTTCAGTTTCAAATAGCTTTACTTTCAATACTTTCAAAAAATTAATCATAAAAATAAGAAAAGCCAGACTACTGAATCTGGAAAAATCAGAAAATATTTTCCGAAAACTATACTGTTTCTGTTTCCTTTTCTGTGTTACATTTGAAGCATCTGTTTAGTGATTGGCGTTTTACATTTTCAGTGACTTTGAAAAACGATTTCCAAGATAATCCAATTATTAAGAATTTCGGAAAAAAATTTTTGTTTAAGTTTCCTATGTTATACACATTTTTGGAATTATTTTCCAGTGTTCCACGGCGATACATTACTCAATTTTCTCCCCACTTGCCGATTTTAGATCGTTGTTTTCTTTCAAAATTTCAAAATTTTCCCTCCTCTCTTATTTAATAAATCATCCTCGAACCTTATTCTCTCACTTTTTTTCTGAATAATCGAAATATATTTGGATCATAAAAACTTTGAAAAACTAGACTAATCAATCTGGAAGTTTTGGAAAATATTTTTCGAACATCTTACTGTACCATCCCCA</canonical>
            <polymorphic>GGAAAATTGCCTAAAATTTGAAATCCCAAATTGAAAAACAAATTATGTTTTTTCGGTAAACAACAGTTACTCAGTTCTTCCAAATTTTGTGTGTTTTTTTTAAAATCTATTTCCTAAATATCCGAATTTTTCTATCTCTAACAAATTTTTGCACTACTGTATGTCCAACGTATTTGATCATTCGCATCATAGAAAGAAAATGGACTACTAAATATGAAAAGTTTTGAAAAATCGCAGTTTGTTTTTGAACAAGGTCTGATTTTTTTTGTTCTGCTCTTACAGCGTTTCGTAGTAATCTGAAATAGTCTGGGTTTTAAGAATTCAGAAAGTTTCAATTTTCTAATTAGCTTTCCAATTTCATCTTTTGATTTGATTCTCTATGAAGATTTGCTTATTTTCCTTTCCATCTTTTCCAATTTGTAACCTTTTTACCGTTTCTCAAACCTTGAAATATTTTCTCAAATTGCTTTACTTCAGTTTCAAATAGCTTTACTTTCAAWACTTTCAAAAAATTAATCATAAAAATAAGAAAAGCCAGACTACTGAATCTGGAAAAATCAGAAAATATTTTCCGAAAACTATACTGTTTCTGTTTCCTTTTCTGTGTTACATTTGAAGCATCTGTTTAGTGATTGGCGTTTTACATTTTCAGTGACTTTGAAAAACGATTTCCAAGATAATCCAATTATTAAGAATTTCGGAAAAAAATTTTTGTTTAAGTTTCCTATGTTATACACATTTTTGGAATTATTTTCCAGTGTTCCACGGCGATACATTACTCAATTTTCTCCCCACTTGCCGATTTTAGATCGTTGTTTTCTTTCAAAATTTCAAAATTTTCCCTCCTCTCTTATTTAATAAATCATCCTCGAACCTTATTCTCTCACTTTTTTTCTGAATAATCGAAATATATTTGGATCATAAAAACTTTGAAAAACTAGACTAATCAATCTGGAAGTTTTGGAAAATATTTTTCGAACATCTTACTGTACCATCCCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGATTTGCTTATTTTCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>CACTAAACAGATGCTTCAAATGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGATTTGCTTATTTTCCTTTCCATCTTTTCCAATTTGTAACCTTTTTACCGTTTCTCAAACCTTGAAATATTTTCTCAAATTGCTTTACTTCAGTTTCAAATAGCTTTACTTTCAATACTTTCAAAAAATTAATCATAAAAATAAGAAAAGCCAGACTACTGAATCTGGAAAAATCAGAAAATATTTTCCGAAAACTATACTGTTTCTGTTTCCTTTTCTGTGTTACATTTGAAGCATCTGTTTAGTG</canonical_amplicon>
		<polymorphic_amplicon>GAAGATTTGCTTATTTTCCTTTCCATCTTTTCCAATTTGTAACCTTTTTACCGTTTCTCAAACCTTGAAATATTTTCTCAAATTGCTTTACTTCAGTTTCAAATAGCTTTACTTTCAAWACTTTCAAAAAATTAATCATAAAAATAAGAAAAGCCAGACTACTGAATCTGGAAAAATCAGAAAATATTTTCCGAAAACTATACTGTTTCTGTTTCCTTTTCTGTGTTACATTTGAAGCATCTGTTTAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17317</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>77670</contig_pos>
        <strand></strand>
        <context>GTGACTTTGA[A/G]AAACGATTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGAAGCATCTGTTTAGTGATTGGCGTTTTACATTTTCAGTGACTTTGA</left_flank>
        <right_flank>AAACGATTTCCAAGATAATCCAATTATTAAGAATTTCGGAAAAAAATTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCAACGTATTTGATCATTCGCATCATAGAAAGAAAATGGACTACTAAATATGAAAAGTTTTGAAAAATCGCAGTTTGTTTTTGAACAAGGTCTGATTTTTTTTGTTCTGCTCTTACAGCGTTTCGTAGTAATCTGAAATAGTCTGGGTTTTAAGAATTCAGAAAGTTTCAATTTTCTAATTAGCTTTCCAATTTCATCTTTTGATTTGATTCTCTATGAAGATTTGCTTATTTTCCTTTCCATCTTTTCCAATTTGTAACCTTTTTACCGTTTCTCAAACCTTGAAATATTTTCTCAAATTGCTTTACTTCAGTTTCAAATAGCTTTACTTTCAATACTTTCAAAAAATTAATCATAAAAATAAGAAAAGCCAGACTACTGAATCTGGAAAAATCAGAAAATATTTTCCGAAAACTATACTGTTTCTGTTTCCTTTTCTGTGTTACATTTGAAGCATCTGTTTAGTGATTGGCGTTTTACATTTTCAGTGACTTTGAAAAACGATTTCCAAGATAATCCAATTATTAAGAATTTCGGAAAAAAATTTTTGTTTAAGTTTCCTATGTTATACACATTTTTGGAATTATTTTCCAGTGTTCCACGGCGATACATTACTCAATTTTCTCCCCACTTGCCGATTTTAGATCGTTGTTTTCTTTCAAAATTTCAAAATTTTCCCTCCTCTCTTATTTAATAAATCATCCTCGAACCTTATTCTCTCACTTTTTTTCTGAATAATCGAAATATATTTGGATCATAAAAACTTTGAAAAACTAGACTAATCAATCTGGAAGTTTTGGAAAATATTTTTCGAACATCTTACTGTACCATCCCCATTTTTCACTTCAAATTAAGAAAAGATGACAGTTTCCCGGAGTAATTTATACTCAACAAGCGGATTCCTCCAGATTAAAAAAAGTCTGTGTTAGATTTTAGAAATTATTCAACTTTTCAAATAATATTTTTTTTTCAATGTTCTCCTGAATTTTCTGTAAACG</canonical>
            <polymorphic>GTCCAACGTATTTGATCATTCGCATCATAGAAAGAAAATGGACTACTAAATATGAAAAGTTTTGAAAAATCGCAGTTTGTTTTTGAACAAGGTCTGATTTTTTTTGTTCTGCTCTTACAGCGTTTCGTAGTAATCTGAAATAGTCTGGGTTTTAAGAATTCAGAAAGTTTCAATTTTCTAATTAGCTTTCCAATTTCATCTTTTGATTTGATTCTCTATGAAGATTTGCTTATTTTCCTTTCCATCTTTTCCAATTTGTAACCTTTTTACCGTTTCTCAAACCTTGAAATATTTTCTCAAATTGCTTTACTTCAGTTTCAAATAGCTTTACTTTCAATACTTTCAAAAAATTAATCATAAAAATAAGAAAAGCCAGACTACTGAATCTGGAAAAATCAGAAAATATTTTCCGAAAACTATACTGTTTCTGTTTCCTTTTCTGTGTTACATTTGAAGCATCTGTTTAGTGATTGGCGTTTTACATTTTCAGTGACTTTGARAAACGATTTCCAAGATAATCCAATTATTAAGAATTTCGGAAAAAAATTTTTGTTTAAGTTTCCTATGTTATACACATTTTTGGAATTATTTTCCAGTGTTCCACGGCGATACATTACTCAATTTTCTCCCCACTTGCCGATTTTAGATCGTTGTTTTCTTTCAAAATTTCAAAATTTTCCCTCCTCTCTTATTTAATAAATCATCCTCGAACCTTATTCTCTCACTTTTTTTCTGAATAATCGAAATATATTTGGATCATAAAAACTTTGAAAAACTAGACTAATCAATCTGGAAGTTTTGGAAAATATTTTTCGAACATCTTACTGTACCATCCCCATTTTTCACTTCAAATTAAGAAAAGATGACAGTTTCCCGGAGTAATTTATACTCAACAAGCGGATTCCTCCAGATTAAAAAAAGTCTGTGTTAGATTTTAGAAATTATTCAACTTTTCAAATAATATTTTTTTTTCAATGTTCTCCTGAATTTTCTGTAAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTGTTTCCTTTTCTGTGTTAC</pcr_primer_p1>
		<pcr_primer_p2>TTGAAATTTTGAAAGAAAACAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTCTGTTTCCTTTTCTGTGTTACATTTGAAGCATCTGTTTAGTGATTGGCGTTTTACATTTTCAGTGACTTTGAAAAACGATTTCCAAGATAATCCAATTATTAAGAATTTCGGAAAAAAATTTTTGTTTAAGTTTCCTATGTTATACACATTTTTGGAATTATTTTCCAGTGTTCCACGGCGATACATTACTCAATTTTCTCCCCACTTGCCGATTTTAGATCGTTGTTTTCTTTCAAAATTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TTCTGTTTCCTTTTCTGTGTTACATTTGAAGCATCTGTTTAGTGATTGGCGTTTTACATTTTCAGTGACTTTGARAAACGATTTCCAAGATAATCCAATTATTAAGAATTTCGGAAAAAAATTTTTGTTTAAGTTTCCTATGTTATACACATTTTTGGAATTATTTTCCAGTGTTCCACGGCGATACATTACTCAATTTTCTCCCCACTTGCCGATTTTAGATCGTTGTTTTCTTTCAAAATTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17318</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>77691</contig_pos>
        <strand></strand>
        <context>CAAGATAATC[C/T]AATTWTTAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGCGTTTTACATTTTCAGTGACTTTGAAAAACGATTTCCAAGATAATC</left_flank>
        <right_flank>AATTATTAAGAATTTCGGAAAAAAATTTTTGTTTAAGTTTCCTATGTTAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATCATAGAAAGAAAATGGACTACTAAATATGAAAAGTTTTGAAAAATCGCAGTTTGTTTTTGAACAAGGTCTGATTTTTTTTGTTCTGCTCTTACAGCGTTTCGTAGTAATCTGAAATAGTCTGGGTTTTAAGAATTCAGAAAGTTTCAATTTTCTAATTAGCTTTCCAATTTCATCTTTTGATTTGATTCTCTATGAAGATTTGCTTATTTTCCTTTCCATCTTTTCCAATTTGTAACCTTTTTACCGTTTCTCAAACCTTGAAATATTTTCTCAAATTGCTTTACTTCAGTTTCAAATAGCTTTACTTTCAATACTTTCAAAAAATTAATCATAAAAATAAGAAAAGCCAGACTACTGAATCTGGAAAAATCAGAAAATATTTTCCGAAAACTATACTGTTTCTGTTTCCTTTTCTGTGTTACATTTGAAGCATCTGTTTAGTGATTGGCGTTTTACATTTTCAGTGACTTTGAAAAACGATTTCCAAGATAATCCAATTATTAAGAATTTCGGAAAAAAATTTTTGTTTAAGTTTCCTATGTTATACACATTTTTGGAATTATTTTCCAGTGTTCCACGGCGATACATTACTCAATTTTCTCCCCACTTGCCGATTTTAGATCGTTGTTTTCTTTCAAAATTTCAAAATTTTCCCTCCTCTCTTATTTAATAAATCATCCTCGAACCTTATTCTCTCACTTTTTTTCTGAATAATCGAAATATATTTGGATCATAAAAACTTTGAAAAACTAGACTAATCAATCTGGAAGTTTTGGAAAATATTTTTCGAACATCTTACTGTACCATCCCCATTTTTCACTTCAAATTAAGAAAAGATGACAGTTTCCCGGAGTAATTTATACTCAACAAGCGGATTCCTCCAGATTAAAAAAAGTCTGTGTTAGATTTTAGAAATTATTCAACTTTTCAAATAATATTTTTTTTTCAATGTTCTCCTGAATTTTCTGTAAACGTTTTGTTAGTTTTCCTAATTT</canonical>
            <polymorphic>GCATCATAGAAAGAAAATGGACTACTAAATATGAAAAGTTTTGAAAAATCGCAGTTTGTTTTTGAACAAGGTCTGATTTTTTTTGTTCTGCTCTTACAGCGTTTCGTAGTAATCTGAAATAGTCTGGGTTTTAAGAATTCAGAAAGTTTCAATTTTCTAATTAGCTTTCCAATTTCATCTTTTGATTTGATTCTCTATGAAGATTTGCTTATTTTCCTTTCCATCTTTTCCAATTTGTAACCTTTTTACCGTTTCTCAAACCTTGAAATATTTTCTCAAATTGCTTTACTTCAGTTTCAAATAGCTTTACTTTCAATACTTTCAAAAAATTAATCATAAAAATAAGAAAAGCCAGACTACTGAATCTGGAAAAATCAGAAAATATTTTCCGAAAACTATACTGTTTCTGTTTCCTTTTCTGTGTTACATTTGAAGCATCTGTTTAGTGATTGGCGTTTTACATTTTCAGTGACTTTGAAAAACGATTTCCAAGATAATCYAATTATTAAGAATTTCGGAAAAAAATTTTTGTTTAAGTTTCCTATGTTATACACATTTTTGGAATTATTTTCCAGTGTTCCACGGCGATACATTACTCAATTTTCTCCCCACTTGCCGATTTTAGATCGTTGTTTTCTTTCAAAATTTCAAAATTTTCCCTCCTCTCTTATTTAATAAATCATCCTCGAACCTTATTCTCTCACTTTTTTTCTGAATAATCGAAATATATTTGGATCATAAAAACTTTGAAAAACTAGACTAATCAATCTGGAAGTTTTGGAAAATATTTTTCGAACATCTTACTGTACCATCCCCATTTTTCACTTCAAATTAAGAAAAGATGACAGTTTCCCGGAGTAATTTATACTCAACAAGCGGATTCCTCCAGATTAAAAAAAGTCTGTGTTAGATTTTAGAAATTATTCAACTTTTCAAATAATATTTTTTTTTCAATGTTCTCCTGAATTTTCTGTAAACGTTTTGTTAGTTTTCCTAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTGTTTCCTTTTCTGTGTTAC</pcr_primer_p1>
		<pcr_primer_p2>TTGAAATTTTGAAAGAAAACAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTCTGTTTCCTTTTCTGTGTTACATTTGAAGCATCTGTTTAGTGATTGGCGTTTTACATTTTCAGTGACTTTGAAAAACGATTTCCAAGATAATCCAATTATTAAGAATTTCGGAAAAAAATTTTTGTTTAAGTTTCCTATGTTATACACATTTTTGGAATTATTTTCCAGTGTTCCACGGCGATACATTACTCAATTTTCTCCCCACTTGCCGATTTTAGATCGTTGTTTTCTTTCAAAATTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TTCTGTTTCCTTTTCTGTGTTACATTTGAAGCATCTGTTTAGTGATTGGCGTTTTACATTTTCAGTGACTTTGAAAAACGATTTCCAAGATAATCYAATTATTAAGAATTTCGGAAAAAAATTTTTGTTTAAGTTTCCTATGTTATACACATTTTTGGAATTATTTTCCAGTGTTCCACGGCGATACATTACTCAATTTTCTCCCCACTTGCCGATTTTAGATCGTTGTTTTCTTTCAAAATTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17319</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>77696</contig_pos>
        <strand></strand>
        <context>TAATCYAATT[A/T]TTAAGAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTTTACATTTTCAGTGACTTTGAAAAACGATTTCCAAGATAATCCAATT</left_flank>
        <right_flank>TTAAGAATTTCGGAAAAAAATTTTTGTTTAAGTTTCCTATGTTATACACA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGAAAGAAAATGGACTACTAAATATGAAAAGTTTTGAAAAATCGCAGTTTGTTTTTGAACAAGGTCTGATTTTTTTTGTTCTGCTCTTACAGCGTTTCGTAGTAATCTGAAATAGTCTGGGTTTTAAGAATTCAGAAAGTTTCAATTTTCTAATTAGCTTTCCAATTTCATCTTTTGATTTGATTCTCTATGAAGATTTGCTTATTTTCCTTTCCATCTTTTCCAATTTGTAACCTTTTTACCGTTTCTCAAACCTTGAAATATTTTCTCAAATTGCTTTACTTCAGTTTCAAATAGCTTTACTTTCAATACTTTCAAAAAATTAATCATAAAAATAAGAAAAGCCAGACTACTGAATCTGGAAAAATCAGAAAATATTTTCCGAAAACTATACTGTTTCTGTTTCCTTTTCTGTGTTACATTTGAAGCATCTGTTTAGTGATTGGCGTTTTACATTTTCAGTGACTTTGAAAAACGATTTCCAAGATAATCCAATTATTAAGAATTTCGGAAAAAAATTTTTGTTTAAGTTTCCTATGTTATACACATTTTTGGAATTATTTTCCAGTGTTCCACGGCGATACATTACTCAATTTTCTCCCCACTTGCCGATTTTAGATCGTTGTTTTCTTTCAAAATTTCAAAATTTTCCCTCCTCTCTTATTTAATAAATCATCCTCGAACCTTATTCTCTCACTTTTTTTCTGAATAATCGAAATATATTTGGATCATAAAAACTTTGAAAAACTAGACTAATCAATCTGGAAGTTTTGGAAAATATTTTTCGAACATCTTACTGTACCATCCCCATTTTTCACTTCAAATTAAGAAAAGATGACAGTTTCCCGGAGTAATTTATACTCAACAAGCGGATTCCTCCAGATTAAAAAAAGTCTGTGTTAGATTTTAGAAATTATTCAACTTTTCAAATAATATTTTTTTTTCAATGTTCTCCTGAATTTTCTGTAAACGTTTTGTTAGTTTTCCTAATTTCGCAT</canonical>
            <polymorphic>ATAGAAAGAAAATGGACTACTAAATATGAAAAGTTTTGAAAAATCGCAGTTTGTTTTTGAACAAGGTCTGATTTTTTTTGTTCTGCTCTTACAGCGTTTCGTAGTAATCTGAAATAGTCTGGGTTTTAAGAATTCAGAAAGTTTCAATTTTCTAATTAGCTTTCCAATTTCATCTTTTGATTTGATTCTCTATGAAGATTTGCTTATTTTCCTTTCCATCTTTTCCAATTTGTAACCTTTTTACCGTTTCTCAAACCTTGAAATATTTTCTCAAATTGCTTTACTTCAGTTTCAAATAGCTTTACTTTCAATACTTTCAAAAAATTAATCATAAAAATAAGAAAAGCCAGACTACTGAATCTGGAAAAATCAGAAAATATTTTCCGAAAACTATACTGTTTCTGTTTCCTTTTCTGTGTTACATTTGAAGCATCTGTTTAGTGATTGGCGTTTTACATTTTCAGTGACTTTGAAAAACGATTTCCAAGATAATCCAATTWTTAAGAATTTCGGAAAAAAATTTTTGTTTAAGTTTCCTATGTTATACACATTTTTGGAATTATTTTCCAGTGTTCCACGGCGATACATTACTCAATTTTCTCCCCACTTGCCGATTTTAGATCGTTGTTTTCTTTCAAAATTTCAAAATTTTCCCTCCTCTCTTATTTAATAAATCATCCTCGAACCTTATTCTCTCACTTTTTTTCTGAATAATCGAAATATATTTGGATCATAAAAACTTTGAAAAACTAGACTAATCAATCTGGAAGTTTTGGAAAATATTTTTCGAACATCTTACTGTACCATCCCCATTTTTCACTTCAAATTAAGAAAAGATGACAGTTTCCCGGAGTAATTTATACTCAACAAGCGGATTCCTCCAGATTAAAAAAAGTCTGTGTTAGATTTTAGAAATTATTCAACTTTTCAAATAATATTTTTTTTTCAATGTTCTCCTGAATTTTCTGTAAACGTTTTGTTAGTTTTCCTAATTTCGCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTGTTTCCTTTTCTGTGTTAC</pcr_primer_p1>
		<pcr_primer_p2>TTGAAATTTTGAAAGAAAACAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTCTGTTTCCTTTTCTGTGTTACATTTGAAGCATCTGTTTAGTGATTGGCGTTTTACATTTTCAGTGACTTTGAAAAACGATTTCCAAGATAATCCAATTATTAAGAATTTCGGAAAAAAATTTTTGTTTAAGTTTCCTATGTTATACACATTTTTGGAATTATTTTCCAGTGTTCCACGGCGATACATTACTCAATTTTCTCCCCACTTGCCGATTTTAGATCGTTGTTTTCTTTCAAAATTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TTCTGTTTCCTTTTCTGTGTTACATTTGAAGCATCTGTTTAGTGATTGGCGTTTTACATTTTCAGTGACTTTGAAAAACGATTTCCAAGATAATCCAATTWTTAAGAATTTCGGAAAAAAATTTTTGTTTAAGTTTCCTATGTTATACACATTTTTGGAATTATTTTCCAGTGTTCCACGGCGATACATTACTCAATTTTCTCCCCACTTGCCGATTTTAGATCGTTGTTTTCTTTCAAAATTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17323</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>77751</contig_pos>
        <strand></strand>
        <context>TACACATTTT[T/C]GGAATTATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAATTTCGGAAAAAAATTTTTGTTTAAGTTTCCTATGTTATACACATTTT</left_flank>
        <right_flank>GGAATTATTTTCCAGTGTTCCACGGCGATACATTACTCAATTTTCTCCCC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAACAAGGTCTGATTTTTTTTGTTCTGCTCTTACAGCGTTTCGTAGTAATCTGAAATAGTCTGGGTTTTAAGAATTCAGAAAGTTTCAATTTTCTAATTAGCTTTCCAATTTCATCTTTTGATTTGATTCTCTATGAAGATTTGCTTATTTTCCTTTCCATCTTTTCCAATTTGTAACCTTTTTACCGTTTCTCAAACCTTGAAATATTTTCTCAAATTGCTTTACTTCAGTTTCAAATAGCTTTACTTTCAATACTTTCAAAAAATTAATCATAAAAATAAGAAAAGCCAGACTACTGAATCTGGAAAAATCAGAAAATATTTTCCGAAAACTATACTGTTTCTGTTTCCTTTTCTGTGTTACATTTGAAGCATCTGTTTAGTGATTGGCGTTTTACATTTTCAGTGACTTTGAAAAACGATTTCCAAGATAATCCAATTATTAAGAATTTCGGAAAAAAATTTTTGTTTAAGTTTCCTATGTTATACACATTTTTGGAATTATTTTCCAGTGTTCCACGGCGATACATTACTCAATTTTCTCCCCACTTGCCGATTTTAGATCGTTGTTTTCTTTCAAAATTTCAAAATTTTCCCTCCTCTCTTATTTAATAAATCATCCTCGAACCTTATTCTCTCACTTTTTTTCTGAATAATCGAAATATATTTGGATCATAAAAACTTTGAAAAACTAGACTAATCAATCTGGAAGTTTTGGAAAATATTTTTCGAACATCTTACTGTACCATCCCCATTTTTCACTTCAAATTAAGAAAAGATGACAGTTTCCCGGAGTAATTTATACTCAACAAGCGGATTCCTCCAGATTAAAAAAAGTCTGTGTTAGATTTTAGAAATTATTCAACTTTTCAAATAATATTTTTTTTTCAATGTTCTCCTGAATTTTCTGTAAACGTTTTGTTAGTTTTCCTAATTTCGCATGAAGACGTTTTTTTTTCGAATTTTCCAATTATCACCGTTTCTCATATTAGGTTGG</canonical>
            <polymorphic>TTTGAACAAGGTCTGATTTTTTTTGTTCTGCTCTTACAGCGTTTCGTAGTAATCTGAAATAGTCTGGGTTTTAAGAATTCAGAAAGTTTCAATTTTCTAATTAGCTTTCCAATTTCATCTTTTGATTTGATTCTCTATGAAGATTTGCTTATTTTCCTTTCCATCTTTTCCAATTTGTAACCTTTTTACCGTTTCTCAAACCTTGAAATATTTTCTCAAATTGCTTTACTTCAGTTTCAAATAGCTTTACTTTCAATACTTTCAAAAAATTAATCATAAAAATAAGAAAAGCCAGACTACTGAATCTGGAAAAATCAGAAAATATTTTCCGAAAACTATACTGTTTCTGTTTCCTTTTCTGTGTTACATTTGAAGCATCTGTTTAGTGATTGGCGTTTTACATTTTCAGTGACTTTGAAAAACGATTTCCAAGATAATCCAATTATTAAGAATTTCGGAAAAAAATTTTTGTTTAAGTTTCCTATGTTATACACATTTTYGGAATTATTTTCCAGTGTTCCACGGCGATACATTACTCAATTTTCTCCCCACTTGCCGATTTTAGATCGTTGTTTTCTTTCAAAATTTCAAAATTTTCCCTCCTCTCTTATTTAATAAATCATCCTCGAACCTTATTCTCTCACTTTTTTTCTGAATAATCGAAATATATTTGGATCATAAAAACTTTGAAAAACTAGACTAATCAATCTGGAAGTTTTGGAAAATATTTTTCGAACATCTTACTGTACCATCCCCATTTTTCACTTCAAATTAAGAAAAGATGACAGTTTCCCGGAGTAATTTATACTCAACAAGCGGATTCCTCCAGATTAAAAAAAGTCTGTGTTAGATTTTAGAAATTATTCAACTTTTCAAATAATATTTTTTTTTCAATGTTCTCCTGAATTTTCTGTAAACGTTTTGTTAGTTTTCCTAATTTCGCATGAAGACGTTTTTTTTTCGAATTTTCCAATTATCACCGTTTCTCATATTAGGTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTGTTTCCTTTTCTGTGTTAC</pcr_primer_p1>
		<pcr_primer_p2>TTGAAATTTTGAAAGAAAACAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTCTGTTTCCTTTTCTGTGTTACATTTGAAGCATCTGTTTAGTGATTGGCGTTTTACATTTTCAGTGACTTTGAAAAACGATTTCCAAGATAATCCAATTATTAAGAATTTCGGAAAAAAATTTTTGTTTAAGTTTCCTATGTTATACACATTTTTGGAATTATTTTCCAGTGTTCCACGGCGATACATTACTCAATTTTCTCCCCACTTGCCGATTTTAGATCGTTGTTTTCTTTCAAAATTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TTCTGTTTCCTTTTCTGTGTTACATTTGAAGCATCTGTTTAGTGATTGGCGTTTTACATTTTCAGTGACTTTGAAAAACGATTTCCAAGATAATCCAATTATTAAGAATTTCGGAAAAAAATTTTTGTTTAAGTTTCCTATGTTATACACATTTTYGGAATTATTTTCCAGTGTTCCACGGCGATACATTACTCAATTTTCTCCCCACTTGCCGATTTTAGATCGTTGTTTTCTTTCAAAATTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17324</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>77807</contig_pos>
        <strand></strand>
        <context>TCCCCACTTG[C/T]CGATTTTAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTTTCCAGTGTTCCACGGCGATACATTACTCAATTTTCTCCCCACTTG</left_flank>
        <right_flank>CGATTTTAGATCGTTGTTTTCTTTCAAAATTTCAAAATTTTCCCTCCTCT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATAGTCTGGGTTTTAAGAATTCAGAAAGTTTCAATTTTCTAATTAGCTTTCCAATTTCATCTTTTGATTTGATTCTCTATGAAGATTTGCTTATTTTCCTTTCCATCTTTTCCAATTTGTAACCTTTTTACCGTTTCTCAAACCTTGAAATATTTTCTCAAATTGCTTTACTTCAGTTTCAAATAGCTTTACTTTCAATACTTTCAAAAAATTAATCATAAAAATAAGAAAAGCCAGACTACTGAATCTGGAAAAATCAGAAAATATTTTCCGAAAACTATACTGTTTCTGTTTCCTTTTCTGTGTTACATTTGAAGCATCTGTTTAGTGATTGGCGTTTTACATTTTCAGTGACTTTGAAAAACGATTTCCAAGATAATCCAATTATTAAGAATTTCGGAAAAAAATTTTTGTTTAAGTTTCCTATGTTATACACATTTTTGGAATTATTTTCCAGTGTTCCACGGCGATACATTACTCAATTTTCTCCCCACTTGCCGATTTTAGATCGTTGTTTTCTTTCAAAATTTCAAAATTTTCCCTCCTCTCTTATTTAATAAATCATCCTCGAACCTTATTCTCTCACTTTTTTTCTGAATAATCGAAATATATTTGGATCATAAAAACTTTGAAAAACTAGACTAATCAATCTGGAAGTTTTGGAAAATATTTTTCGAACATCTTACTGTACCATCCCCATTTTTCACTTCAAATTAAGAAAAGATGACAGTTTCCCGGAGTAATTTATACTCAACAAGCGGATTCCTCCAGATTAAAAAAAGTCTGTGTTAGATTTTAGAAATTATTCAACTTTTCAAATAATATTTTTTTTTCAATGTTCTCCTGAATTTTCTGTAAACGTTTTGTTAGTTTTCCTAATTTCGCATGAAGACGTTTTTTTTTCGAATTTTCCAATTATCACCGTTTCTCATATTAGGTTGGCCGGAAAGTAACTGTCCATTTTTTGATTCGTGAATAACACAAAAGCAAGAGTTATC</canonical>
            <polymorphic>AAATAGTCTGGGTTTTAAGAATTCAGAAAGTTTCAATTTTCTAATTAGCTTTCCAATTTCATCTTTTGATTTGATTCTCTATGAAGATTTGCTTATTTTCCTTTCCATCTTTTCCAATTTGTAACCTTTTTACCGTTTCTCAAACCTTGAAATATTTTCTCAAATTGCTTTACTTCAGTTTCAAATAGCTTTACTTTCAATACTTTCAAAAAATTAATCATAAAAATAAGAAAAGCCAGACTACTGAATCTGGAAAAATCAGAAAATATTTTCCGAAAACTATACTGTTTCTGTTTCCTTTTCTGTGTTACATTTGAAGCATCTGTTTAGTGATTGGCGTTTTACATTTTCAGTGACTTTGAAAAACGATTTCCAAGATAATCCAATTATTAAGAATTTCGGAAAAAAATTTTTGTTTAAGTTTCCTATGTTATACACATTTTTGGAATTATTTTCCAGTGTTCCACGGCGATACATTACTCAATTTTCTCCCCACTTGYCGATTTTAGATCGTTGTTTTCTTTCAAAATTTCAAAATTTTCCCTCCTCTCTTATTTAATAAATCATCCTCGAACCTTATTCTCTCACTTTTTTTCTGAATAATCGAAATATATTTGGATCATAAAAACTTTGAAAAACTAGACTAATCAATCTGGAAGTTTTGGAAAATATTTTTCGAACATCTTACTGTACCATCCCCATTTTTCACTTCAAATTAAGAAAAGATGACAGTTTCCCGGAGTAATTTATACTCAACAAGCGGATTCCTCCAGATTAAAAAAAGTCTGTGTTAGATTTTAGAAATTATTCAACTTTTCAAATAATATTTTTTTTTCAATGTTCTCCTGAATTTTCTGTAAACGTTTTGTTAGTTTTCCTAATTTCGCATGAAGACGTTTTTTTTTCGAATTTTCCAATTATCACCGTTTCTCATATTAGGTTGGCCGGAAAGTAACTGTCCATTTTTTGATTCGTGAATAACACAAAAGCAAGAGTTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGAAGCATCTGTTTAGTGAT</pcr_primer_p1>
		<pcr_primer_p2>ATTAAATAAGAGAGGAGGGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTGAAGCATCTGTTTAGTGATTGGCGTTTTACATTTTCAGTGACTTTGAAAAACGATTTCCAAGATAATCCAATTATTAAGAATTTCGGAAAAAAATTTTTGTTTAAGTTTCCTATGTTATACACATTTTTGGAATTATTTTCCAGTGTTCCACGGCGATACATTACTCAATTTTCTCCCCACTTGCCGATTTTAGATCGTTGTTTTCTTTCAAAATTTCAAAATTTTCCCTCCTCTCTTATTTAAT</canonical_amplicon>
		<polymorphic_amplicon>ATTTGAAGCATCTGTTTAGTGATTGGCGTTTTACATTTTCAGTGACTTTGAAAAACGATTTCCAAGATAATCCAATTATTAAGAATTTCGGAAAAAAATTTTTGTTTAAGTTTCCTATGTTATACACATTTTTGGAATTATTTTCCAGTGTTCCACGGCGATACATTACTCAATTTTCTCCCCACTTGYCGATTTTAGATCGTTGTTTTCTTTCAAAATTTCAAAATTTTCCCTCCTCTCTTATTTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17325</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>79594</contig_pos>
        <strand>+</strand>
        <context>GTAATRTTCA[A/T]ATGTTTCAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCTCCAATTCTGTTCTTTCGTTTCGTTTCCTCTTTTTTGTAATATTCA</left_flank>
        <right_flank>ATGTTTCAGAACGATTCCCACGGGATTCACCTATTAAACAAATCCCTACA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACGTTTTCAGCTATTTTCAAAATTTCGCGGTCATTTGAGATGTTCGATTTCAGTTCATTCTTCACATATTCCTTTTTTCAAAAGTTAAGATTATTTGGATCATGACACTTTGTTCAAACAACAGCACTACTAAATTTTTACTTTTTGAGAACTATACTTTTTTCCTTTTTAGTTAGTTGGTATTTCAAAAATTTAAAATCAAATTTGAATAAAAAGTTCAGTTTCAGATTCCCAGTTTTTATAAGTTTTCAACTAATACTCCGGTTTGAGAAAAGCAAGTTTATTTTTATAATTTTATAAATTTTAATATTTTTTCAAAAAATGTTCATTCTATGTTCCAGAAATTTGAGTTTCATAATTTCTGATTCTCTGTATATGTTCCTATTTTCACAGCATTCATTTCTCCCACAGTTTTCAATTTTTACCGTTTATCACAATTCATAAACCTTTCTCCAATTCTGTTCTTTCGTTTCGTTTCCTCTTTTTTGTAATATTCATATGTTTCAGAACGATTCCCACGGGATTCACCTATTAAACAAATCCCTACAAAACTTTTCGAAAAAAAAAACATTGGGATTTTTTGGTTCCTCATCCACTCTGTTATAATATCGAAAAACGAAATGCCATTGTGGTAAAAACGAGTGAGAGAGTATCGAAAATCAAGAGACGCCAGAGAACAAAACAATTGGGACTGAGCAAATATTGGGAAACGAAAGCGAAAAGAAGGGGAAAAGGAGGAGCAGTTTGCGATCCGATATGGGTATGTTGTTTAATAAAATACGTTTGTGTGTGTTTATACGCCAAAAAACATGTATATGGTTATGATGTTTTGGCACCTAGACAATGTTTTTTTTTCTCAGAACTTCTAAAAAATTCATATAAGATTAACAAAGTTCCTAATTTTCATAACTTTGAGAAACCGAAAGTTTTTGAGAATCTGTTTCATATATGGTTCTGATTTCTATTTGAATTGCTGCCAATCTTCTTTGGATATTATT</canonical>
            <polymorphic>TTACGTTTTCAGCTATTTTCAAAATTTCGCGGTCATTTGAGATGTTCGATTTCAGTTCATTCTTCACATATTCCTTTTTTCAAAAGTTAAGATTATTTGGATCATGACACTTTGTTCAAACAACAGCACTACTAAATTTTTACTTTTTGAGAACTATACTTTTTTCCTTTTTAGTTAGTTGGTATTTCAAAAATTTAAAATCAAATTTGAATAAAAAGTTCAGTTTCAGATTCCCAGTTTTTATAAGTTTTCAACTAATACTCCGGTTTGAGAAAAGCAAGTTTATTTTTATAATTTTATAAATTTTAATATTTTTTCAAAAAATGTTCATTCTATGTTCCAGAAATTTGAGTTTCATAATTTCTGATTCTCTGTATATGTTCCTATTTTCACAGCATTCATTTCTCCCACAGTTTTCAATTTTTACCGTTTATCACAATTCATAAACCTTTCTCCAATTCTGTTCTTTCGTTTCGTTTCCTCTTTTTTGTAATATTCAWATGTTTCAGAACGATTCCCACGGGATTCACCTATTAAACAAATCCCTACAAAACTTTTCGAAAAAAAAAACATTGGGATTTTTTGGTTCCTCATCCACTCTGTTATAATATCGAAAAACGAAATGCCATTGTGGTAAAAACGAGTGAGAGAGTATCGAAAATCAAGAGACGCCAGAGAACAAAACAATTGGGACTGAGCAAATATTGGGAAACGAAAGCGAAAAGAAGGGGAAAAGGAGGAGCAGTTTGCGATCCGATATGGGTATGTTGTTTAATAAAATACGTTTGTGTGTGTTTATACGCCAAAAAACATGTATATGGTTATGATGTTTTGGCACCTAGACAATGTTTTTTTTTCTCAGAACTTCTAAAAAATTCATATAAGATTAACAAAGTTCCTAATTTTCATAACTTTGAGAAACCGAAAGTTTTTGAGAATCTGTTTCATATATGGTTCTGATTTCTATTTGAATTGCTGCCAATCTTCTTTGGATATTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATATG</site>
                <isoschizomers>
                    <enzyme>FauNDI</enzyme>
                    <enzyme>NdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAATTTTTACCGTTTATCAC</pcr_primer_p1>
		<pcr_primer_p2>TGATTTTCGATACTCTCTCACTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCAATTTTTACCGTTTATCACAATTCATAAACCTTTCTCCAATTCTGTTCTTTCGTTTCGTTTCCTCTTTTTTGTAATATTCATATGTTTCAGAACGATTCCCACGGGATTCACCTATTAAACAAATCCCTACAAAACTTTTCGAAAAAAAAAACATTGGGATTTTTTGGTTCCTCATCCACTCTGTTATAATATCGAAAAACGAAATGCCATTGTGGTAAAAACGAGTGAGAGAGTATCGAAAATCA</canonical_amplicon>
		<polymorphic_amplicon>TTTCAATTTTTACCGTTTATCACAATTCATAAACCTTTCTCCAATTCTGTTCTTTCGTTTCGTTTCCTCTTTTTTGTAATATTCAWATGTTTCAGAACGATTCCCACGGGATTCACCTATTAAACAAATCCCTACAAAACTTTTCGAAAAAAAAAACATTGGGATTTTTTGGTTCCTCATCCACTCTGTTATAATATCGAAAAACGAAATGCCATTGTGGTAAAAACGAGTGAGAGAGTATCGAAAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17326</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>79589</contig_pos>
        <strand>+</strand>
        <context>TTTTTGTAAT[A/G]TTCAWATGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACCTTTCTCCAATTCTGTTCTTTCGTTTCGTTTCCTCTTTTTTGTAAT</left_flank>
        <right_flank>TTCATATGTTTCAGAACGATTCCCACGGGATTCACCTATTAAACAAATCC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTCTTACGTTTTCAGCTATTTTCAAAATTTCGCGGTCATTTGAGATGTTCGATTTCAGTTCATTCTTCACATATTCCTTTTTTCAAAAGTTAAGATTATTTGGATCATGACACTTTGTTCAAACAACAGCACTACTAAATTTTTACTTTTTGAGAACTATACTTTTTTCCTTTTTAGTTAGTTGGTATTTCAAAAATTTAAAATCAAATTTGAATAAAAAGTTCAGTTTCAGATTCCCAGTTTTTATAAGTTTTCAACTAATACTCCGGTTTGAGAAAAGCAAGTTTATTTTTATAATTTTATAAATTTTAATATTTTTTCAAAAAATGTTCATTCTATGTTCCAGAAATTTGAGTTTCATAATTTCTGATTCTCTGTATATGTTCCTATTTTCACAGCATTCATTTCTCCCACAGTTTTCAATTTTTACCGTTTATCACAATTCATAAACCTTTCTCCAATTCTGTTCTTTCGTTTCGTTTCCTCTTTTTTGTAATATTCATATGTTTCAGAACGATTCCCACGGGATTCACCTATTAAACAAATCCCTACAAAACTTTTCGAAAAAAAAAACATTGGGATTTTTTGGTTCCTCATCCACTCTGTTATAATATCGAAAAACGAAATGCCATTGTGGTAAAAACGAGTGAGAGAGTATCGAAAATCAAGAGACGCCAGAGAACAAAACAATTGGGACTGAGCAAATATTGGGAAACGAAAGCGAAAAGAAGGGGAAAAGGAGGAGCAGTTTGCGATCCGATATGGGTATGTTGTTTAATAAAATACGTTTGTGTGTGTTTATACGCCAAAAAACATGTATATGGTTATGATGTTTTGGCACCTAGACAATGTTTTTTTTTCTCAGAACTTCTAAAAAATTCATATAAGATTAACAAAGTTCCTAATTTTCATAACTTTGAGAAACCGAAAGTTTTTGAGAATCTGTTTCATATATGGTTCTGATTTCTATTTGAATTGCTGCCAATCTTCTTTGGATA</canonical>
            <polymorphic>CTTTCTTACGTTTTCAGCTATTTTCAAAATTTCGCGGTCATTTGAGATGTTCGATTTCAGTTCATTCTTCACATATTCCTTTTTTCAAAAGTTAAGATTATTTGGATCATGACACTTTGTTCAAACAACAGCACTACTAAATTTTTACTTTTTGAGAACTATACTTTTTTCCTTTTTAGTTAGTTGGTATTTCAAAAATTTAAAATCAAATTTGAATAAAAAGTTCAGTTTCAGATTCCCAGTTTTTATAAGTTTTCAACTAATACTCCGGTTTGAGAAAAGCAAGTTTATTTTTATAATTTTATAAATTTTAATATTTTTTCAAAAAATGTTCATTCTATGTTCCAGAAATTTGAGTTTCATAATTTCTGATTCTCTGTATATGTTCCTATTTTCACAGCATTCATTTCTCCCACAGTTTTCAATTTTTACCGTTTATCACAATTCATAAACCTTTCTCCAATTCTGTTCTTTCGTTTCGTTTCCTCTTTTTTGTAATRTTCATATGTTTCAGAACGATTCCCACGGGATTCACCTATTAAACAAATCCCTACAAAACTTTTCGAAAAAAAAAACATTGGGATTTTTTGGTTCCTCATCCACTCTGTTATAATATCGAAAAACGAAATGCCATTGTGGTAAAAACGAGTGAGAGAGTATCGAAAATCAAGAGACGCCAGAGAACAAAACAATTGGGACTGAGCAAATATTGGGAAACGAAAGCGAAAAGAAGGGGAAAAGGAGGAGCAGTTTGCGATCCGATATGGGTATGTTGTTTAATAAAATACGTTTGTGTGTGTTTATACGCCAAAAAACATGTATATGGTTATGATGTTTTGGCACCTAGACAATGTTTTTTTTTCTCAGAACTTCTAAAAAATTCATATAAGATTAACAAAGTTCCTAATTTTCATAACTTTGAGAAACCGAAAGTTTTTGAGAATCTGTTTCATATATGGTTCTGATTTCTATTTGAATTGCTGCCAATCTTCTTTGGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>315 292 209 184</canonical_bands>
                <polymorphic_bands>393 315 292</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAATTTTTACCGTTTATCAC</pcr_primer_p1>
		<pcr_primer_p2>TGATTTTCGATACTCTCTCACTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCAATTTTTACCGTTTATCACAATTCATAAACCTTTCTCCAATTCTGTTCTTTCGTTTCGTTTCCTCTTTTTTGTAATATTCATATGTTTCAGAACGATTCCCACGGGATTCACCTATTAAACAAATCCCTACAAAACTTTTCGAAAAAAAAAACATTGGGATTTTTTGGTTCCTCATCCACTCTGTTATAATATCGAAAAACGAAATGCCATTGTGGTAAAAACGAGTGAGAGAGTATCGAAAATCA</canonical_amplicon>
		<polymorphic_amplicon>TTTCAATTTTTACCGTTTATCACAATTCATAAACCTTTCTCCAATTCTGTTCTTTCGTTTCGTTTCCTCTTTTTTGTAATRTTCATATGTTTCAGAACGATTCCCACGGGATTCACCTATTAAACAAATCCCTACAAAACTTTTCGAAAAAAAAAACATTGGGATTTTTTGGTTCCTCATCCACTCTGTTATAATATCGAAAAACGAAATGCCATTGTGGTAAAAACGAGTGAGAGAGTATCGAAAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17327</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>145955</contig_pos>
        <strand></strand>
        <context>CCTGAAAAGA[G/A]AGAAAAAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAGAATGAACTGAGCTACAGTAATCAAAAGCGCATGAAACCCTGAAAAGA</left_flank>
        <right_flank>AGAAAAAACATCGGAAAAATCTGCCAAAAAACGGACAAAAGAACGGTCCG</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACCTGGAAAATCCCATTTTGACTGTTTTTTTTTCTCAATCGTTGCCCGTTTTCAGGCTTTTTTTCCCACTGAAAAAGCAGTCGAAATCGAAAAACACCGTAATCTCTAGCTACATACATGCTCCTTTAAACGATTTTTCAAAAAGAAACAATTCAATTTTTCGACGATTTTGATAGTTTTTTTTTCGATGAAAATCGCCAAAAAGTCGATTAAAATAAGTGGAATTCGTCGAAAAAATGACCAAAAATAAGCTCGACAAACTTGAGACTACAGTAATCAAAGGCGCATGAAATCCAGAAAAAAGTTTAAAAAGTGAAAAAATGGTCAAGAAGGACCAAAAATGGACCAAGAACTGGCCGAAAATAGGTCAAAAACGGCTGAAAACATTACGGAAAACCTGGACTTTCTACAGTAATCAAAGGTTTATGAAATTTAATTTTTTGGATATAGAATGAACTGAGCTACAGTAATCAAAAGCGCATGAAACCCTGAAAAGAGAGAAAAAACATCGGAAAAATCTGCCAAAAAACGGACAAAAGAACGGTCCGAAAATTGCCATGAATGGTCCAAAAAAAAATCACGAAAATCGCCGAAAAATTGACCAAAAATATACTCGAAATACGGAAAGCTACAGTAATCAAAGGCGCATGAAATTCAGAAAAAAGTGAAAAACGGTCAGAAAACGGACCGAAAATGGACCGAGAACTGGCCGAAGATCAGTTAAAATAAACAAAAAAATTGGTTATCTACAGTAATCAAAGGTACATATAACCTTGAAATTTCGAAATTTTGGGCTACAGTAATCCAACTAGGATTACTGTAGCCCAAAATTTGATTATCGAAGGCGCAAAAACGGACCAAGAACTGGCCGAAAATCGGTCAAAAACAGCTGAAAATAATACGGAAAAATTGAACGTTCTACAGTAATCAAAGGCGCATGGAACCTTGAATTTTCAAAATTTTGTGCAACTGTAATCCAACTTGGATTACTGTAGCTC</canonical>
            <polymorphic>TAACCTGGAAAATCCCATTTTGACTGTTTTTTTTTCTCAATCGTTGCCCGTTTTCAGGCTTTTTTTCCCACTGAAAAAGCAGTCGAAATCGAAAAACACCGTAATCTCTAGCTACATACATGCTCCTTTAAACGATTTTTCAAAAAGAAACAATTCAATTTTTCGACGATTTTGATAGTTTTTTTTTCGATGAAAATCGCCAAAAAGTCGATTAAAATAAGTGGAATTCGTCGAAAAAATGACCAAAAATAAGCTCGACAAACTTGAGACTACAGTAATCAAAGGCGCATGAAATCCAGAAAAAAGTTTAAAAAGTGAAAAAATGGTCAAGAAGGACCAAAAATGGACCAAGAACTGGCCGAAAATAGGTCAAAAACGGCTGAAAACATTACGGAAAACCTGGACTTTCTACAGTAATCAAAGGTTTATGAAATTTAATTTTTTGGATATAGAATGAACTGAGCTACAGTAATCAAAAGCGCATGAAACCCTGAAAAGARAGAAAAAACATCGGAAAAATCTGCCAAAAAACGGACAAAAGAACGGTCCGAAAATTGCCATGAATGGTCCAAAAAAAAATCACGAAAATCGCCGAAAAATTGACCAAAAATATACTCGAAATACGGAAAGCTACAGTAATCAAAGGCGCATGAAATTCAGAAAAAAGTGAAAAACGGTCAGAAAACGGACCGAAAATGGACCGAGAACTGGCCGAAGATCAGTTAAAATAAACAAAAAAATTGGTTATCTACAGTAATCAAAGGTACATATAACCTTGAAATTTCGAAATTTTGGGCTACAGTAATCCAACTAGGATTACTGTAGCCCAAAATTTGATTATCGAAGGCGCAAAAACGGACCAAGAACTGGCCGAAAATCGGTCAAAAACAGCTGAAAATAATACGGAAAAATTGAACGTTCTACAGTAATCAAAGGCGCATGGAACCTTGAATTTTCAAAATTTTGTGCAACTGTAATCCAACTTGGATTACTGTAGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACGGCTGAAAACATTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTCGAGTATATTTTTGGTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAACGGCTGAAAACATTACGGAAAACCTGGACTTTCTACAGTAATCAAAGGTTTATGAAATTTAATTTTTTGGATATAGAATGAACTGAGCTACAGTAATCAAAAGCGCATGAAACCCTGAAAAGAGAGAAAAAACATCGGAAAAATCTGCCAAAAAACGGACAAAAGAACGGTCCGAAAATTGCCATGAATGGTCCAAAAAAAAATCACGAAAATCGCCGAAAAATTGACCAAAAATATACTCGAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAACGGCTGAAAACATTACGGAAAACCTGGACTTTCTACAGTAATCAAAGGTTTATGAAATTTAATTTTTTGGATATAGAATGAACTGAGCTACAGTAATCAAAAGCGCATGAAACCCTGAAAAGARAGAAAAAACATCGGAAAAATCTGCCAAAAAACGGACAAAAGAACGGTCCGAAAATTGCCATGAATGGTCCAAAAAAAAATCACGAAAATCGCCGAAAAATTGACCAAAAATATACTCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17351</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>211396</contig_pos>
        <strand></strand>
        <context>AGGTCAAGTG[G/T]RCGGGGCAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTG</left_flank>
        <right_flank>GCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAATAAATCATTTTTCGTCGATTTTCAATAAAGGCTGAAAATATTGAACATGTACTTAAACACTATATGAATCAGTATTTCTTCATCCTTCCAGTTTTTGATAGTCAATTTTCCGAGAAAAAAAACTAAAACGGAACACTCATGTTATACAACAGGATAAATGTTATTCCCACTTACAATCAGTTTTAGTTTTAACCAGAATATTTCATTTCATTCGGGAATACTCCAAAAAAATTCCAGCTTCACAAACATCTGAATTACACAGTTTTCTAAAATTAATTATTTATTTATTGCAAACGACCTAAAAGACCAGGCGGACCGGATATTGTGCTAAAAGTCAATTTCAGATTTTTTTCACACGAATCCTTACAGTATTTTCTGTTTCAAAGTGCTCAGATAACTTTTTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTGAAAAACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTTCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCGCTCAATTTGTCGCGGTGACATTCTCAATGGCAATTAACGCTGTTCTAATCATCCTCGTCGTTTATCACTCTCCAGATAAGATTGGAAACTACAAGTACCTCATGATTTAC</canonical>
            <polymorphic>ATCAATAAATCATTTTTCGTCGATTTTCAATAAAGGCTGAAAATATTGAACATGTACTTAAACACTATATGAATCAGTATTTCTTCATCCTTCCAGTTTTTGATAGTCAATTTTCCGAGAAAAAAAACTAAAACGGAACACTCATGTTATACAACAGGATAAATGTTATTCCCACTTACAATCAGTTTTAGTTTTAACCAGAATATTTCATTTCATTCGGGAATACTCCAAAAAAATTCCAGCTTCACAAACATCTGAATTACACAGTTTTCTAAAATTAATTATTTATTTATTGCAAACGACCTAAAAGACCAGGCGGACCGGATATTGTGCTAAAAGTCAATTTCAGATTTTTTTCACACGAATCCTTACAGTATTTTCTGTTTCAAAGTGCTCAGATAACTTTTTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGKGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTGAAAAACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTTCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCGCTCAATTTGTCGCGGTGACATTCTCAATGGCAATTAACGCTGTTCTAATCATCCTCGTCGTTTATCACTCTCCAGATAAGATTGGAAACTACAAGTACCTCATGATTTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>500 315 185</canonical_bands>
                <polymorphic_bands>685 315</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCGTTATTTAAAATTTCAGTG</pcr_primer_p1>
		<pcr_primer_p2>TGTACTTTTGAAATGAGCTATGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACA</canonical_amplicon>
		<polymorphic_amplicon>TTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGKGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17352</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>211397</contig_pos>
        <strand></strand>
        <context>GGTCAAGTGK[G/A]CGGGGCAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGG</left_flank>
        <right_flank>CGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAATAAATCATTTTTCGTCGATTTTCAATAAAGGCTGAAAATATTGAACATGTACTTAAACACTATATGAATCAGTATTTCTTCATCCTTCCAGTTTTTGATAGTCAATTTTCCGAGAAAAAAAACTAAAACGGAACACTCATGTTATACAACAGGATAAATGTTATTCCCACTTACAATCAGTTTTAGTTTTAACCAGAATATTTCATTTCATTCGGGAATACTCCAAAAAAATTCCAGCTTCACAAACATCTGAATTACACAGTTTTCTAAAATTAATTATTTATTTATTGCAAACGACCTAAAAGACCAGGCGGACCGGATATTGTGCTAAAAGTCAATTTCAGATTTTTTTCACACGAATCCTTACAGTATTTTCTGTTTCAAAGTGCTCAGATAACTTTTTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTGAAAAACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTTCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCGCTCAATTTGTCGCGGTGACATTCTCAATGGCAATTAACGCTGTTCTAATCATCCTCGTCGTTTATCACTCTCCAGATAAGATTGGAAACTACAAGTACCTCATGATTTACT</canonical>
            <polymorphic>TCAATAAATCATTTTTCGTCGATTTTCAATAAAGGCTGAAAATATTGAACATGTACTTAAACACTATATGAATCAGTATTTCTTCATCCTTCCAGTTTTTGATAGTCAATTTTCCGAGAAAAAAAACTAAAACGGAACACTCATGTTATACAACAGGATAAATGTTATTCCCACTTACAATCAGTTTTAGTTTTAACCAGAATATTTCATTTCATTCGGGAATACTCCAAAAAAATTCCAGCTTCACAAACATCTGAATTACACAGTTTTCTAAAATTAATTATTTATTTATTGCAAACGACCTAAAAGACCAGGCGGACCGGATATTGTGCTAAAAGTCAATTTCAGATTTTTTTCACACGAATCCTTACAGTATTTTCTGTTTCAAAGTGCTCAGATAACTTTTTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGRCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTGAAAAACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTTCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCGCTCAATTTGTCGCGGTGACATTCTCAATGGCAATTAACGCTGTTCTAATCATCCTCGTCGTTTATCACTCTCCAGATAAGATTGGAAACTACAAGTACCTCATGATTTACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 314 185</canonical_bands>
                <polymorphic_bands>686 314</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCGTTATTTAAAATTTCAGTG</pcr_primer_p1>
		<pcr_primer_p2>TGTACTTTTGAAATGAGCTATGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACA</canonical_amplicon>
		<polymorphic_amplicon>TTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGRCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17353</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>211416</contig_pos>
        <strand></strand>
        <context>GACTCTGCAT[T/C]TTCGCGTCGC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCAT</left_flank>
        <right_flank>TTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATTTTCAATAAAGGCTGAAAATATTGAACATGTACTTAAACACTATATGAATCAGTATTTCTTCATCCTTCCAGTTTTTGATAGTCAATTTTCCGAGAAAAAAAACTAAAACGGAACACTCATGTTATACAACAGGATAAATGTTATTCCCACTTACAATCAGTTTTAGTTTTAACCAGAATATTTCATTTCATTCGGGAATACTCCAAAAAAATTCCAGCTTCACAAACATCTGAATTACACAGTTTTCTAAAATTAATTATTTATTTATTGCAAACGACCTAAAAGACCAGGCGGACCGGATATTGTGCTAAAAGTCAATTTCAGATTTTTTTCACACGAATCCTTACAGTATTTTCTGTTTCAAAGTGCTCAGATAACTTTTTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTGAAAAACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTTCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCGCTCAATTTGTCGCGGTGACATTCTCAATGGCAATTAACGCTGTTCTAATCATCCTCGTCGTTTATCACTCTCCAGATAAGATTGGAAACTACAAGTACCTCATGATTTACTTCTGCTTGATCTCCATGTT</canonical>
            <polymorphic>CGATTTTCAATAAAGGCTGAAAATATTGAACATGTACTTAAACACTATATGAATCAGTATTTCTTCATCCTTCCAGTTTTTGATAGTCAATTTTCCGAGAAAAAAAACTAAAACGGAACACTCATGTTATACAACAGGATAAATGTTATTCCCACTTACAATCAGTTTTAGTTTTAACCAGAATATTTCATTTCATTCGGGAATACTCCAAAAAAATTCCAGCTTCACAAACATCTGAATTACACAGTTTTCTAAAATTAATTATTTATTTATTGCAAACGACCTAAAAGACCAGGCGGACCGGATATTGTGCTAAAAGTCAATTTCAGATTTTTTTCACACGAATCCTTACAGTATTTTCTGTTTCAAAGTGCTCAGATAACTTTTTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATYTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTGAAAAACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTTCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCGCTCAATTTGTCGCGGTGACATTCTCAATGGCAATTAACGCTGTTCTAATCATCCTCGTCGTTTATCACTCTCCAGATAAGATTGGAAACTACAAGTACCTCATGATTTACTTCTGCTTGATCTCCATGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCGTTATTTAAAATTTCAGTG</pcr_primer_p1>
		<pcr_primer_p2>TGTACTTTTGAAATGAGCTATGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACA</canonical_amplicon>
		<polymorphic_amplicon>TTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATYTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17354</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>211451</contig_pos>
        <strand></strand>
        <context>CACTTACCTT[T/G]CTCACCTCRT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTT</left_flank>
        <right_flank>CTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTAAACACTATATGAATCAGTATTTCTTCATCCTTCCAGTTTTTGATAGTCAATTTTCCGAGAAAAAAAACTAAAACGGAACACTCATGTTATACAACAGGATAAATGTTATTCCCACTTACAATCAGTTTTAGTTTTAACCAGAATATTTCATTTCATTCGGGAATACTCCAAAAAAATTCCAGCTTCACAAACATCTGAATTACACAGTTTTCTAAAATTAATTATTTATTTATTGCAAACGACCTAAAAGACCAGGCGGACCGGATATTGTGCTAAAAGTCAATTTCAGATTTTTTTCACACGAATCCTTACAGTATTTTCTGTTTCAAAGTGCTCAGATAACTTTTTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTGAAAAACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTTCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCGCTCAATTTGTCGCGGTGACATTCTCAATGGCAATTAACGCTGTTCTAATCATCCTCGTCGTTTATCACTCTCCAGATAAGATTGGAAACTACAAGTACCTCATGATTTACTTCTGCTTGATCTCCATGTTCTATGCGGCGATTGACTTTACTGTCCAACCGGTAA</canonical>
            <polymorphic>ACTTAAACACTATATGAATCAGTATTTCTTCATCCTTCCAGTTTTTGATAGTCAATTTTCCGAGAAAAAAAACTAAAACGGAACACTCATGTTATACAACAGGATAAATGTTATTCCCACTTACAATCAGTTTTAGTTTTAACCAGAATATTTCATTTCATTCGGGAATACTCCAAAAAAATTCCAGCTTCACAAACATCTGAATTACACAGTTTTCTAAAATTAATTATTTATTTATTGCAAACGACCTAAAAGACCAGGCGGACCGGATATTGTGCTAAAAGTCAATTTCAGATTTTTTTCACACGAATCCTTACAGTATTTTCTGTTTCAAAGTGCTCAGATAACTTTTTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTKCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTGAAAAACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTTCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCGCTCAATTTGTCGCGGTGACATTCTCAATGGCAATTAACGCTGTTCTAATCATCCTCGTCGTTTATCACTCTCCAGATAAGATTGGAAACTACAAGTACCTCATGATTTACTTCTGCTTGATCTCCATGTTCTATGCGGCGATTGACTTTACTGTCCAACCGGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCGTTATTTAAAATTTCAGTG</pcr_primer_p1>
		<pcr_primer_p2>TGTACTTTTGAAATGAGCTATGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACA</canonical_amplicon>
		<polymorphic_amplicon>TTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTKCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17355</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>211460</contig_pos>
        <strand></strand>
        <context>TKCTCACCTC[A/G]TAGCTCAGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTC</left_flank>
        <right_flank>TAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATATGAATCAGTATTTCTTCATCCTTCCAGTTTTTGATAGTCAATTTTCCGAGAAAAAAAACTAAAACGGAACACTCATGTTATACAACAGGATAAATGTTATTCCCACTTACAATCAGTTTTAGTTTTAACCAGAATATTTCATTTCATTCGGGAATACTCCAAAAAAATTCCAGCTTCACAAACATCTGAATTACACAGTTTTCTAAAATTAATTATTTATTTATTGCAAACGACCTAAAAGACCAGGCGGACCGGATATTGTGCTAAAAGTCAATTTCAGATTTTTTTCACACGAATCCTTACAGTATTTTCTGTTTCAAAGTGCTCAGATAACTTTTTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTGAAAAACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTTCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCGCTCAATTTGTCGCGGTGACATTCTCAATGGCAATTAACGCTGTTCTAATCATCCTCGTCGTTTATCACTCTCCAGATAAGATTGGAAACTACAAGTACCTCATGATTTACTTCTGCTTGATCTCCATGTTCTATGCGGCGATTGACTTTACTGTCCAACCGGTAACCTTCACCT</canonical>
            <polymorphic>CTATATGAATCAGTATTTCTTCATCCTTCCAGTTTTTGATAGTCAATTTTCCGAGAAAAAAAACTAAAACGGAACACTCATGTTATACAACAGGATAAATGTTATTCCCACTTACAATCAGTTTTAGTTTTAACCAGAATATTTCATTTCATTCGGGAATACTCCAAAAAAATTCCAGCTTCACAAACATCTGAATTACACAGTTTTCTAAAATTAATTATTTATTTATTGCAAACGACCTAAAAGACCAGGCGGACCGGATATTGTGCTAAAAGTCAATTTCAGATTTTTTTCACACGAATCCTTACAGTATTTTCTGTTTCAAAGTGCTCAGATAACTTTTTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCRTAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTGAAAAACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTTCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCGCTCAATTTGTCGCGGTGACATTCTCAATGGCAATTAACGCTGTTCTAATCATCCTCGTCGTTTATCACTCTCCAGATAAGATTGGAAACTACAAGTACCTCATGATTTACTTCTGCTTGATCTCCATGTTCTATGCGGCGATTGACTTTACTGTCCAACCGGTAACCTTCACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCGTTATTTAAAATTTCAGTG</pcr_primer_p1>
		<pcr_primer_p2>TGTACTTTTGAAATGAGCTATGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACA</canonical_amplicon>
		<polymorphic_amplicon>TTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCRTAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17356</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>211501</contig_pos>
        <strand></strand>
        <context>GACTTACTAG[G/C]YCAACTCCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAG</left_flank>
        <right_flank>TCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCAATTTTCCGAGAAAAAAAACTAAAACGGAACACTCATGTTATACAACAGGATAAATGTTATTCCCACTTACAATCAGTTTTAGTTTTAACCAGAATATTTCATTTCATTCGGGAATACTCCAAAAAAATTCCAGCTTCACAAACATCTGAATTACACAGTTTTCTAAAATTAATTATTTATTTATTGCAAACGACCTAAAAGACCAGGCGGACCGGATATTGTGCTAAAAGTCAATTTCAGATTTTTTTCACACGAATCCTTACAGTATTTTCTGTTTCAAAGTGCTCAGATAACTTTTTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTGAAAAACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTTCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCGCTCAATTTGTCGCGGTGACATTCTCAATGGCAATTAACGCTGTTCTAATCATCCTCGTCGTTTATCACTCTCCAGATAAGATTGGAAACTACAAGTACCTCATGATTTACTTCTGCTTGATCTCCATGTTCTATGCGGCGATTGACTTTACTGTCCAACCGGTAACCTTCACCTAATTGGAGATGATTGGCTAATTAGGCTAATTAACTTTTGTT</canonical>
            <polymorphic>GTCAATTTTCCGAGAAAAAAAACTAAAACGGAACACTCATGTTATACAACAGGATAAATGTTATTCCCACTTACAATCAGTTTTAGTTTTAACCAGAATATTTCATTTCATTCGGGAATACTCCAAAAAAATTCCAGCTTCACAAACATCTGAATTACACAGTTTTCTAAAATTAATTATTTATTTATTGCAAACGACCTAAAAGACCAGGCGGACCGGATATTGTGCTAAAAGTCAATTTCAGATTTTTTTCACACGAATCCTTACAGTATTTTCTGTTTCAAAGTGCTCAGATAACTTTTTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGSTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTGAAAAACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTTCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCGCTCAATTTGTCGCGGTGACATTCTCAATGGCAATTAACGCTGTTCTAATCATCCTCGTCGTTTATCACTCTCCAGATAAGATTGGAAACTACAAGTACCTCATGATTTACTTCTGCTTGATCTCCATGTTCTATGCGGCGATTGACTTTACTGTCCAACCGGTAACCTTCACCTAATTGGAGATGATTGGCTAATTAGGCTAATTAACTTTTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 429 73</canonical_bands>
                <polymorphic_bands>571 429</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTGCGCTAGAGATATACTGAT</pcr_primer_p1>
		<pcr_primer_p2>CACTTTTTATAAGCTTTTGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>CAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTG</canonical_amplicon>
		<polymorphic_amplicon>CAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGSTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17357</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>211502</contig_pos>
        <strand></strand>
        <context>ACTTACTAGS[T/C]CAACTCCTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGG</left_flank>
        <right_flank>CAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAATTTTCCGAGAAAAAAAACTAAAACGGAACACTCATGTTATACAACAGGATAAATGTTATTCCCACTTACAATCAGTTTTAGTTTTAACCAGAATATTTCATTTCATTCGGGAATACTCCAAAAAAATTCCAGCTTCACAAACATCTGAATTACACAGTTTTCTAAAATTAATTATTTATTTATTGCAAACGACCTAAAAGACCAGGCGGACCGGATATTGTGCTAAAAGTCAATTTCAGATTTTTTTCACACGAATCCTTACAGTATTTTCTGTTTCAAAGTGCTCAGATAACTTTTTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTGAAAAACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTTCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCGCTCAATTTGTCGCGGTGACATTCTCAATGGCAATTAACGCTGTTCTAATCATCCTCGTCGTTTATCACTCTCCAGATAAGATTGGAAACTACAAGTACCTCATGATTTACTTCTGCTTGATCTCCATGTTCTATGCGGCGATTGACTTTACTGTCCAACCGGTAACCTTCACCTAATTGGAGATGATTGGCTAATTAGGCTAATTAACTTTTGTTT</canonical>
            <polymorphic>TCAATTTTCCGAGAAAAAAAACTAAAACGGAACACTCATGTTATACAACAGGATAAATGTTATTCCCACTTACAATCAGTTTTAGTTTTAACCAGAATATTTCATTTCATTCGGGAATACTCCAAAAAAATTCCAGCTTCACAAACATCTGAATTACACAGTTTTCTAAAATTAATTATTTATTTATTGCAAACGACCTAAAAGACCAGGCGGACCGGATATTGTGCTAAAAGTCAATTTCAGATTTTTTTCACACGAATCCTTACAGTATTTTCTGTTTCAAAGTGCTCAGATAACTTTTTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGYCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTGAAAAACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTTCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCGCTCAATTTGTCGCGGTGACATTCTCAATGGCAATTAACGCTGTTCTAATCATCCTCGTCGTTTATCACTCTCCAGATAAGATTGGAAACTACAAGTACCTCATGATTTACTTCTGCTTGATCTCCATGTTCTATGCGGCGATTGACTTTACTGTCCAACCGGTAACCTTCACCTAATTGGAGATGATTGGCTAATTAGGCTAATTAACTTTTGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 428 73</canonical_bands>
                <polymorphic_bands>572 428</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTGCGCTAGAGATATACTGAT</pcr_primer_p1>
		<pcr_primer_p2>CACTTTTTATAAGCTTTTGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>CAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTG</canonical_amplicon>
		<polymorphic_amplicon>CAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGYCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17358</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>211515</contig_pos>
        <strand></strand>
        <context>ACTCCTCTAG[G/T]GCCTTCTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAG</left_flank>
        <right_flank>GCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAAACTAAAACGGAACACTCATGTTATACAACAGGATAAATGTTATTCCCACTTACAATCAGTTTTAGTTTTAACCAGAATATTTCATTTCATTCGGGAATACTCCAAAAAAATTCCAGCTTCACAAACATCTGAATTACACAGTTTTCTAAAATTAATTATTTATTTATTGCAAACGACCTAAAAGACCAGGCGGACCGGATATTGTGCTAAAAGTCAATTTCAGATTTTTTTCACACGAATCCTTACAGTATTTTCTGTTTCAAAGTGCTCAGATAACTTTTTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTGAAAAACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTTCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCGCTCAATTTGTCGCGGTGACATTCTCAATGGCAATTAACGCTGTTCTAATCATCCTCGTCGTTTATCACTCTCCAGATAAGATTGGAAACTACAAGTACCTCATGATTTACTTCTGCTTGATCTCCATGTTCTATGCGGCGATTGACTTTACTGTCCAACCGGTAACCTTCACCTAATTGGAGATGATTGGCTAATTAGGCTAATTAACTTTTGTTTAGTATCTTCACAG</canonical>
            <polymorphic>AAAAAAAACTAAAACGGAACACTCATGTTATACAACAGGATAAATGTTATTCCCACTTACAATCAGTTTTAGTTTTAACCAGAATATTTCATTTCATTCGGGAATACTCCAAAAAAATTCCAGCTTCACAAACATCTGAATTACACAGTTTTCTAAAATTAATTATTTATTTATTGCAAACGACCTAAAAGACCAGGCGGACCGGATATTGTGCTAAAAGTCAATTTCAGATTTTTTTCACACGAATCCTTACAGTATTTTCTGTTTCAAAGTGCTCAGATAACTTTTTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGKGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTGAAAAACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTTCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCGCTCAATTTGTCGCGGTGACATTCTCAATGGCAATTAACGCTGTTCTAATCATCCTCGTCGTTTATCACTCTCCAGATAAGATTGGAAACTACAAGTACCTCATGATTTACTTCTGCTTGATCTCCATGTTCTATGCGGCGATTGACTTTACTGTCCAACCGGTAACCTTCACCTAATTGGAGATGATTGGCTAATTAGGCTAATTAACTTTTGTTTAGTATCTTCACAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>501 300 199</canonical_bands>
                <polymorphic_bands>801 199</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>235 229 140 123 90 76 48 30 15 9 5</canonical_bands>
                <polymorphic_bands>235 229 140 123 90 76 63 30 9 5</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTGCGCTAGAGATATACTGAT</pcr_primer_p1>
		<pcr_primer_p2>CACTTTTTATAAGCTTTTGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>CAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTG</canonical_amplicon>
		<polymorphic_amplicon>CAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGKGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17359</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>211549</contig_pos>
        <strand></strand>
        <context>CAAAAGTACA[T/C]AATTCGAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACA</left_flank>
        <right_flank>AATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGGATAAATGTTATTCCCACTTACAATCAGTTTTAGTTTTAACCAGAATATTTCATTTCATTCGGGAATACTCCAAAAAAATTCCAGCTTCACAAACATCTGAATTACACAGTTTTCTAAAATTAATTATTTATTTATTGCAAACGACCTAAAAGACCAGGCGGACCGGATATTGTGCTAAAAGTCAATTTCAGATTTTTTTCACACGAATCCTTACAGTATTTTCTGTTTCAAAGTGCTCAGATAACTTTTTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTGAAAAACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTTCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCGCTCAATTTGTCGCGGTGACATTCTCAATGGCAATTAACGCTGTTCTAATCATCCTCGTCGTTTATCACTCTCCAGATAAGATTGGAAACTACAAGTACCTCATGATTTACTTCTGCTTGATCTCCATGTTCTATGCGGCGATTGACTTTACTGTCCAACCGGTAACCTTCACCTAATTGGAGATGATTGGCTAATTAGGCTAATTAACTTTTGTTTAGTATCTTCACAGCTACGGCTCCAGCTTCTCAATGATCATGGATCTT</canonical>
            <polymorphic>ACAGGATAAATGTTATTCCCACTTACAATCAGTTTTAGTTTTAACCAGAATATTTCATTTCATTCGGGAATACTCCAAAAAAATTCCAGCTTCACAAACATCTGAATTACACAGTTTTCTAAAATTAATTATTTATTTATTGCAAACGACCTAAAAGACCAGGCGGACCGGATATTGTGCTAAAAGTCAATTTCAGATTTTTTTCACACGAATCCTTACAGTATTTTCTGTTTCAAAGTGCTCAGATAACTTTTTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACAYAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTGAAAAACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTTCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCGCTCAATTTGTCGCGGTGACATTCTCAATGGCAATTAACGCTGTTCTAATCATCCTCGTCGTTTATCACTCTCCAGATAAGATTGGAAACTACAAGTACCTCATGATTTACTTCTGCTTGATCTCCATGTTCTATGCGGCGATTGACTTTACTGTCCAACCGGTAACCTTCACCTAATTGGAGATGATTGGCTAATTAGGCTAATTAACTTTTGTTTAGTATCTTCACAGCTACGGCTCCAGCTTCTCAATGATCATGGATCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATACCTTCAATCTTTGACTTA</pcr_primer_p1>
		<pcr_primer_p2>AACAATTTTAAAGGGGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTGAAAAACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTT</canonical_amplicon>
		<polymorphic_amplicon>CGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACAYAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTGAAAAACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17360</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>211577</contig_pos>
        <strand></strand>
        <context>TCACTTCTAC[T/C]TGACACATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTAC</left_flank>
        <right_flank>TGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTGAAAAACA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGTTTTAGTTTTAACCAGAATATTTCATTTCATTCGGGAATACTCCAAAAAAATTCCAGCTTCACAAACATCTGAATTACACAGTTTTCTAAAATTAATTATTTATTTATTGCAAACGACCTAAAAGACCAGGCGGACCGGATATTGTGCTAAAAGTCAATTTCAGATTTTTTTCACACGAATCCTTACAGTATTTTCTGTTTCAAAGTGCTCAGATAACTTTTTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTGAAAAACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTTCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCGCTCAATTTGTCGCGGTGACATTCTCAATGGCAATTAACGCTGTTCTAATCATCCTCGTCGTTTATCACTCTCCAGATAAGATTGGAAACTACAAGTACCTCATGATTTACTTCTGCTTGATCTCCATGTTCTATGCGGCGATTGACTTTACTGTCCAACCGGTAACCTTCACCTAATTGGAGATGATTGGCTAATTAGGCTAATTAACTTTTGTTTAGTATCTTCACAGCTACGGCTCCAGCTTCTCAATGATCATGGATCTTCGTGGGAGTGTCTTCCAGAACTTTCATT</canonical>
            <polymorphic>TCAGTTTTAGTTTTAACCAGAATATTTCATTTCATTCGGGAATACTCCAAAAAAATTCCAGCTTCACAAACATCTGAATTACACAGTTTTCTAAAATTAATTATTTATTTATTGCAAACGACCTAAAAGACCAGGCGGACCGGATATTGTGCTAAAAGTCAATTTCAGATTTTTTTCACACGAATCCTTACAGTATTTTCTGTTTCAAAGTGCTCAGATAACTTTTTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACYTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTGAAAAACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTTCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCGCTCAATTTGTCGCGGTGACATTCTCAATGGCAATTAACGCTGTTCTAATCATCCTCGTCGTTTATCACTCTCCAGATAAGATTGGAAACTACAAGTACCTCATGATTTACTTCTGCTTGATCTCCATGTTCTATGCGGCGATTGACTTTACTGTCCAACCGGTAACCTTCACCTAATTGGAGATGATTGGCTAATTAGGCTAATTAACTTTTGTTTAGTATCTTCACAGCTACGGCTCCAGCTTCTCAATGATCATGGATCTTCGTGGGAGTGTCTTCCAGAACTTTCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATCATAGCTCATTTCAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>CAAGTGAGAAAACGACATCTTAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTGAAAAACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTTCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTG</canonical_amplicon>
		<polymorphic_amplicon>GAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACYTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTGAAAAACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTTCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17361</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>211676</contig_pos>
        <strand></strand>
        <context>ATCATGAGTT[A/G]TTATGACYCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTT</left_flank>
        <right_flank>TTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCAC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATTTATTTATTGCAAACGACCTAAAAGACCAGGCGGACCGGATATTGTGCTAAAAGTCAATTTCAGATTTTTTTCACACGAATCCTTACAGTATTTTCTGTTTCAAAGTGCTCAGATAACTTTTTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTGAAAAACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTTCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCGCTCAATTTGTCGCGGTGACATTCTCAATGGCAATTAACGCTGTTCTAATCATCCTCGTCGTTTATCACTCTCCAGATAAGATTGGAAACTACAAGTACCTCATGATTTACTTCTGCTTGATCTCCATGTTCTATGCGGCGATTGACTTTACTGTCCAACCGGTAACCTTCACCTAATTGGAGATGATTGGCTAATTAGGCTAATTAACTTTTGTTTAGTATCTTCACAGCTACGGCTCCAGCTTCTCAATGATCATGGATCTTCGTGGGAGTGTCTTCCAGAACTTTCATTATGTTGCTTTTCTGTTAACCTCTTCTCTAGCCGGCTGCTTTGGTATGAGCATCTACGCAATCTCCATCAACTTTGTTTATCGATTTTTTGCGATTCAAA</canonical>
            <polymorphic>ATTATTTATTTATTGCAAACGACCTAAAAGACCAGGCGGACCGGATATTGTGCTAAAAGTCAATTTCAGATTTTTTTCACACGAATCCTTACAGTATTTTCTGTTTCAAAGTGCTCAGATAACTTTTTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTGAAAAACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTRTTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTTCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCGCTCAATTTGTCGCGGTGACATTCTCAATGGCAATTAACGCTGTTCTAATCATCCTCGTCGTTTATCACTCTCCAGATAAGATTGGAAACTACAAGTACCTCATGATTTACTTCTGCTTGATCTCCATGTTCTATGCGGCGATTGACTTTACTGTCCAACCGGTAACCTTCACCTAATTGGAGATGATTGGCTAATTAGGCTAATTAACTTTTGTTTAGTATCTTCACAGCTACGGCTCCAGCTTCTCAATGATCATGGATCTTCGTGGGAGTGTCTTCCAGAACTTTCATTATGTTGCTTTTCTGTTAACCTCTTCTCTAGCCGGCTGCTTTGGTATGAGCATCTACGCAATCTCCATCAACTTTGTTTATCGATTTTTTGCGATTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAATCGCGTTTTCTACTAAT</pcr_primer_p1>
		<pcr_primer_p2>CCAATCTTATCTGGAGAGTGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTTCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCGCTCAATTTGTCGCGGTGACATTCTCAATGGCAATTAACGCTGTTCTAATCATCCTCGTCGTTTATCACTCTCCAGATAAGATTGG</canonical_amplicon>
		<polymorphic_amplicon>AACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTRTTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTTCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCGCTCAATTTGTCGCGGTGACATTCTCAATGGCAATTAACGCTGTTCTAATCATCCTCGTCGTTTATCACTCTCCAGATAAGATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17362</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>211684</contig_pos>
        <strand></strand>
        <context>TTRTTATGAC[C/T]CCGATTTCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGAC</left_flank>
        <right_flank>CCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATTGCAAACGACCTAAAAGACCAGGCGGACCGGATATTGTGCTAAAAGTCAATTTCAGATTTTTTTCACACGAATCCTTACAGTATTTTCTGTTTCAAAGTGCTCAGATAACTTTTTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTGAAAAACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTTCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCGCTCAATTTGTCGCGGTGACATTCTCAATGGCAATTAACGCTGTTCTAATCATCCTCGTCGTTTATCACTCTCCAGATAAGATTGGAAACTACAAGTACCTCATGATTTACTTCTGCTTGATCTCCATGTTCTATGCGGCGATTGACTTTACTGTCCAACCGGTAACCTTCACCTAATTGGAGATGATTGGCTAATTAGGCTAATTAACTTTTGTTTAGTATCTTCACAGCTACGGCTCCAGCTTCTCAATGATCATGGATCTTCGTGGGAGTGTCTTCCAGAACTTTCATTATGTTGCTTTTCTGTTAACCTCTTCTCTAGCCGGCTGCTTTGGTATGAGCATCTACGCAATCTCCATCAACTTTGTTTATCGATTTTTTGCGATTCAAAGGTAACTA</canonical>
            <polymorphic>TTTATTGCAAACGACCTAAAAGACCAGGCGGACCGGATATTGTGCTAAAAGTCAATTTCAGATTTTTTTCACACGAATCCTTACAGTATTTTCTGTTTCAAAGTGCTCAGATAACTTTTTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTGAAAAACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACYCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTTCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCGCTCAATTTGTCGCGGTGACATTCTCAATGGCAATTAACGCTGTTCTAATCATCCTCGTCGTTTATCACTCTCCAGATAAGATTGGAAACTACAAGTACCTCATGATTTACTTCTGCTTGATCTCCATGTTCTATGCGGCGATTGACTTTACTGTCCAACCGGTAACCTTCACCTAATTGGAGATGATTGGCTAATTAGGCTAATTAACTTTTGTTTAGTATCTTCACAGCTACGGCTCCAGCTTCTCAATGATCATGGATCTTCGTGGGAGTGTCTTCCAGAACTTTCATTATGTTGCTTTTCTGTTAACCTCTTCTCTAGCCGGCTGCTTTGGTATGAGCATCTACGCAATCTCCATCAACTTTGTTTATCGATTTTTTGCGATTCAAAGGTAACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAATCGCGTTTTCTACTAAT</pcr_primer_p1>
		<pcr_primer_p2>CCAATCTTATCTGGAGAGTGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTTCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCGCTCAATTTGTCGCGGTGACATTCTCAATGGCAATTAACGCTGTTCTAATCATCCTCGTCGTTTATCACTCTCCAGATAAGATTGG</canonical_amplicon>
		<polymorphic_amplicon>AACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACYCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTTCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCGCTCAATTTGTCGCGGTGACATTCTCAATGGCAATTAACGCTGTTCTAATCATCCTCGTCGTTTATCACTCTCCAGATAAGATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17363</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>211736</contig_pos>
        <strand></strand>
        <context>CTTCATTCTT[T/C]CCAAATCTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTT</left_flank>
        <right_flank>CCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCG</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTTCAGATTTTTTTCACACGAATCCTTACAGTATTTTCTGTTTCAAAGTGCTCAGATAACTTTTTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTGAAAAACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTTCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCGCTCAATTTGTCGCGGTGACATTCTCAATGGCAATTAACGCTGTTCTAATCATCCTCGTCGTTTATCACTCTCCAGATAAGATTGGAAACTACAAGTACCTCATGATTTACTTCTGCTTGATCTCCATGTTCTATGCGGCGATTGACTTTACTGTCCAACCGGTAACCTTCACCTAATTGGAGATGATTGGCTAATTAGGCTAATTAACTTTTGTTTAGTATCTTCACAGCTACGGCTCCAGCTTCTCAATGATCATGGATCTTCGTGGGAGTGTCTTCCAGAACTTTCATTATGTTGCTTTTCTGTTAACCTCTTCTCTAGCCGGCTGCTTTGGTATGAGCATCTACGCAATCTCCATCAACTTTGTTTATCGATTTTTTGCGATTCAAAGGTAACTATTTCTTCGAGTTTGGTTACTGTACTTGAGCGACATTATCTCGGCTCCTATAC</canonical>
            <polymorphic>CAATTTCAGATTTTTTTCACACGAATCCTTACAGTATTTTCTGTTTCAAAGTGCTCAGATAACTTTTTCCGTTATTTAAAATTTCAGTGCGCTAGAGATATACTGATATTAGAATTTTTCAATTCGGAATTACTTAGCTACAGTACTGTAGGTCAAGTGGGCGGGGCAAGACTCTGCATTTTCGCGTCGCAGTGTACAGTTATACACTTACCTTTCTCACCTCATAGCTCAGCTGCCCGATACCTTCAATCTTTGACTTACTAGGTCAACTCCTCTAGGGCCTTCTGAATCATAGCTCATTTCAAAAGTACATAATTCGAAACTGATCTTTCACTTCTACTTGACACATTCAGAAACTAAAAAACCAAAAGCTTATAAAAAGTGAAAAACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTYCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCGCTCAATTTGTCGCGGTGACATTCTCAATGGCAATTAACGCTGTTCTAATCATCCTCGTCGTTTATCACTCTCCAGATAAGATTGGAAACTACAAGTACCTCATGATTTACTTCTGCTTGATCTCCATGTTCTATGCGGCGATTGACTTTACTGTCCAACCGGTAACCTTCACCTAATTGGAGATGATTGGCTAATTAGGCTAATTAACTTTTGTTTAGTATCTTCACAGCTACGGCTCCAGCTTCTCAATGATCATGGATCTTCGTGGGAGTGTCTTCCAGAACTTTCATTATGTTGCTTTTCTGTTAACCTCTTCTCTAGCCGGCTGCTTTGGTATGAGCATCTACGCAATCTCCATCAACTTTGTTTATCGATTTTTTGCGATTCAAAGGTAACTATTTCTTCGAGTTTGGTTACTGTACTTGAGCGACATTATCTCGGCTCCTATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAATCGCGTTTTCTACTAAT</pcr_primer_p1>
		<pcr_primer_p2>CCAATCTTATCTGGAGAGTGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTTCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCGCTCAATTTGTCGCGGTGACATTCTCAATGGCAATTAACGCTGTTCTAATCATCCTCGTCGTTTATCACTCTCCAGATAAGATTGG</canonical_amplicon>
		<polymorphic_amplicon>AACAATCGCGTTTTCTACTAATGAGGTATTCTCCAGAGAATTATCATGAGTTATTATGACCCCGATTTCTTGTTTCTCCTCCCCTTTAAAATTGTTTTCTCACTTCATTCTTYCCAAATCTCGGCTCCTAAGATGTCGTTTTCTCACTTGCTGAAAACGTTCGCTCAATTTGTCGCGGTGACATTCTCAATGGCAATTAACGCTGTTCTAATCATCCTCGTCGTTTATCACTCTCCAGATAAGATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17364</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>214216</contig_pos>
        <strand></strand>
        <context>AAGAATATYC[A/T]GATGAAAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGAATAAATATCCATCATACTTTCTGTTCTACTTTTCTCAAGAATATCC</left_flank>
        <right_flank>GATGAAAATGCTGAAATTTTTCTGAAAAAATCAAAAATGAATAGCTTCTA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCTTAGCTCCAATTGTCTATACCAGGCTGTCAAACACGGCGTGGCCGACTGCGGCTTTTTGGAGAGTTCCGATTTATACTCCAAACCGTTTTCCAGACTCTGATTCCGATCACCTTCCTCTTTATCCCAATCGGCATCCTATTCTCTGCGCCTCTTTTTGGTTTCGATCTCGAGAGATGGAGTTATTTGGTCACATTCTTCTACTCATTCTACCCTGTCGTTGACCCAATTCCAACCATCTTTTTCATTGACGAGTACCGGACTGCCTTTCTGAGTAAGTTCCGTCAGTTTCTAAGAATTTCAAAAAAAATATTCTTCAGACTTCTTCCGCCGAACACTAAACCGGAACCAAGTCACTCCAGTGAAGTCCATTGATATCGTACCGGAACTTCCGTAGATCGCATTAAATTTTTCCGTTTTTATTGCACTTTCTTCAATCAAAATATTTGAATAAATATCCATCATACTTTCTGTTCTACTTTTCTCAAGAATATCCAGATGAAAATGCTGAAATTTTTCTGAAAAAATCAAAAATGAATAGCTTCTACAAAGACTATTTTCCTTTCAAGTTTTCTAGCGGTTATCATATCCAAGGCCAAACAGGAATCAATGTTATTTTAGCTACAATATTTTTCAAATTTACATTCAAGCCGATTTTTCATTATGTTTATCATGTTTAATGGTAACTCCCGAAAAATGCCGTTAAAAGCGAAAAATTTTCAAAAAAAAGTTGCTAGGAGGGACGAGGATTTGAATTCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>TCTTCTTAGCTCCAATTGTCTATACCAGGCTGTCAAACACGGCGTGGCCGACTGCGGCTTTTTGGAGAGTTCCGATTTATACTCCAAACCGTTTTCCAGACTCTGATTCCGATCACCTTCCTCTTTATCCCAATCGGCATCCTATTCTCTGCGCCTCTTTTTGGTTTCGATCTCGAGAGATGGAGTTATTTGGTCACATTCTTCTACTCATTCTACCCTGTCGTTGACCCAATTCCAACCATCTTTTTCATTGACGAGTACCGGACTGCCTTTCTGAGTAAGTTCCGTCAGTTTCTAAGAATTTCAAAAAAAATATTCTTCAGACTTCTTCCGCCGAACACTAAACCGGAACCAAGTCACTCCAGTGAAGTCCATTGATATCGTACCGGAACTTCCGTAGATCGCATTAAATTTTTCCGTTTTTATTGCACTTTCTTCAATCAAAATATTTGAATAAATATCCATCATACTTTCTGTTCTACTTTTCTCAAGAATATCCWGATGAAAATGCTGAAATTTTTCTGAAAAAATCAAAAATGAATAGCTTCTACAAAGACTATTTTCCTTTCAAGTTTTCTAGCGGTTATCATATCCAAGGCCAAACAGGAATCAATGTTATTTTAGCTACAATATTTTTCAAATTTACATTCAAGCCGATTTTTCATTATGTTTATCATGTTTAATGGTAACTCCCGAAAAATGCCGTTAAAAGCGAAAAATTTTCAAAAAAAAGTTGCTAGGAGGGACGAGGATTTGAATTCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGATATCGTACCGGAACTT</pcr_primer_p1>
		<pcr_primer_p2>AAAATAACATTGATTCCTGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTGATATCGTACCGGAACTTCCGTAGATCGCATTAAATTTTTCCGTTTTTATTGCACTTTCTTCAATCAAAATATTTGAATAAATATCCATCATACTTTCTGTTCTACTTTTCTCAAGAATATCCAGATGAAAATGCTGAAATTTTTCTGAAAAAATCAAAAATGAATAGCTTCTACAAAGACTATTTTCCTTTCAAGTTTTCTAGCGGTTATCATATCCAAGGCCAAACAGGAATCAATGTTATTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTGATATCGTACCGGAACTTCCGTAGATCGCATTAAATTTTTCCGTTTTTATTGCACTTTCTTCAATCAAAATATTTGAATAAATATCCATCATACTTTCTGTTCTACTTTTCTCAAGAATATCCWGATGAAAATGCTGAAATTTTTCTGAAAAAATCAAAAATGAATAGCTTCTACAAAGACTATTTTCCTTTCAAGTTTTCTAGCGGTTATCATATCCAAGGCCAAACAGGAATCAATGTTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17365</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>214214</contig_pos>
        <strand></strand>
        <context>TCAAGAATAT[C/T]CWGATGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTGAATAAATATCCATCATACTTTCTGTTCTACTTTTCTCAAGAATAT</left_flank>
        <right_flank>CAGATGAAAATGCTGAAATTTTTCTGAAAAAATCAAAAATGAATAGCTTC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTCTTCTTAGCTCCAATTGTCTATACCAGGCTGTCAAACACGGCGTGGCCGACTGCGGCTTTTTGGAGAGTTCCGATTTATACTCCAAACCGTTTTCCAGACTCTGATTCCGATCACCTTCCTCTTTATCCCAATCGGCATCCTATTCTCTGCGCCTCTTTTTGGTTTCGATCTCGAGAGATGGAGTTATTTGGTCACATTCTTCTACTCATTCTACCCTGTCGTTGACCCAATTCCAACCATCTTTTTCATTGACGAGTACCGGACTGCCTTTCTGAGTAAGTTCCGTCAGTTTCTAAGAATTTCAAAAAAAATATTCTTCAGACTTCTTCCGCCGAACACTAAACCGGAACCAAGTCACTCCAGTGAAGTCCATTGATATCGTACCGGAACTTCCGTAGATCGCATTAAATTTTTCCGTTTTTATTGCACTTTCTTCAATCAAAATATTTGAATAAATATCCATCATACTTTCTGTTCTACTTTTCTCAAGAATATCCAGATGAAAATGCTGAAATTTTTCTGAAAAAATCAAAAATGAATAGCTTCTACAAAGACTATTTTCCTTTCAAGTTTTCTAGCGGTTATCATATCCAAGGCCAAACAGGAATCAATGTTATTTTAGCTACAATATTTTTCAAATTTACATTCAAGCCGATTTTTCATTATGTTTATCATGTTTAATGGTAACTCCCGAAAAATGCCGTTAAAAGCGAAAAATTTTCAAAAAAAAGTTGCTAGGAGGGACGAGGATTTGAATTCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>CGTCTTCTTAGCTCCAATTGTCTATACCAGGCTGTCAAACACGGCGTGGCCGACTGCGGCTTTTTGGAGAGTTCCGATTTATACTCCAAACCGTTTTCCAGACTCTGATTCCGATCACCTTCCTCTTTATCCCAATCGGCATCCTATTCTCTGCGCCTCTTTTTGGTTTCGATCTCGAGAGATGGAGTTATTTGGTCACATTCTTCTACTCATTCTACCCTGTCGTTGACCCAATTCCAACCATCTTTTTCATTGACGAGTACCGGACTGCCTTTCTGAGTAAGTTCCGTCAGTTTCTAAGAATTTCAAAAAAAATATTCTTCAGACTTCTTCCGCCGAACACTAAACCGGAACCAAGTCACTCCAGTGAAGTCCATTGATATCGTACCGGAACTTCCGTAGATCGCATTAAATTTTTCCGTTTTTATTGCACTTTCTTCAATCAAAATATTTGAATAAATATCCATCATACTTTCTGTTCTACTTTTCTCAAGAATATYCAGATGAAAATGCTGAAATTTTTCTGAAAAAATCAAAAATGAATAGCTTCTACAAAGACTATTTTCCTTTCAAGTTTTCTAGCGGTTATCATATCCAAGGCCAAACAGGAATCAATGTTATTTTAGCTACAATATTTTTCAAATTTACATTCAAGCCGATTTTTCATTATGTTTATCATGTTTAATGGTAACTCCCGAAAAATGCCGTTAAAAGCGAAAAATTTTCAAAAAAAAGTTGCTAGGAGGGACGAGGATTTGAATTCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>315 306 194 98 76 9 2</canonical_bands>
                <polymorphic_bands>315 306 203 98 76 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGATATCGTACCGGAACTT</pcr_primer_p1>
		<pcr_primer_p2>AAAATAACATTGATTCCTGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTGATATCGTACCGGAACTTCCGTAGATCGCATTAAATTTTTCCGTTTTTATTGCACTTTCTTCAATCAAAATATTTGAATAAATATCCATCATACTTTCTGTTCTACTTTTCTCAAGAATATCCAGATGAAAATGCTGAAATTTTTCTGAAAAAATCAAAAATGAATAGCTTCTACAAAGACTATTTTCCTTTCAAGTTTTCTAGCGGTTATCATATCCAAGGCCAAACAGGAATCAATGTTATTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTGATATCGTACCGGAACTTCCGTAGATCGCATTAAATTTTTCCGTTTTTATTGCACTTTCTTCAATCAAAATATTTGAATAAATATCCATCATACTTTCTGTTCTACTTTTCTCAAGAATATYCAGATGAAAATGCTGAAATTTTTCTGAAAAAATCAAAAATGAATAGCTTCTACAAAGACTATTTTCCTTTCAAGTTTTCTAGCGGTTATCATATCCAAGGCCAAACAGGAATCAATGTTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17366</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>214147</contig_pos>
        <strand></strand>
        <context>TTTTWTTGCA[C/T]TTTCTTCAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGTACCGGAACTTCCGTAGATCGCATTAAATTTTTCCGTTTTTATTGCA</left_flank>
        <right_flank>TTTCTTCAATCAAAATATTTGAATAAATATCCATCATACTTTCTGTTCTA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAACTGCTAGAATTGATCTCTTATTGCCCTCATAAGAACTGCCTGAAAGGGAAATGTCCCTGTTCCGTCTTCTTAGCTCCAATTGTCTATACCAGGCTGTCAAACACGGCGTGGCCGACTGCGGCTTTTTGGAGAGTTCCGATTTATACTCCAAACCGTTTTCCAGACTCTGATTCCGATCACCTTCCTCTTTATCCCAATCGGCATCCTATTCTCTGCGCCTCTTTTTGGTTTCGATCTCGAGAGATGGAGTTATTTGGTCACATTCTTCTACTCATTCTACCCTGTCGTTGACCCAATTCCAACCATCTTTTTCATTGACGAGTACCGGACTGCCTTTCTGAGTAAGTTCCGTCAGTTTCTAAGAATTTCAAAAAAAATATTCTTCAGACTTCTTCCGCCGAACACTAAACCGGAACCAAGTCACTCCAGTGAAGTCCATTGATATCGTACCGGAACTTCCGTAGATCGCATTAAATTTTTCCGTTTTTATTGCACTTTCTTCAATCAAAATATTTGAATAAATATCCATCATACTTTCTGTTCTACTTTTCTCAAGAATATCCAGATGAAAATGCTGAAATTTTTCTGAAAAAATCAAAAATGAATAGCTTCTACAAAGACTATTTTCCTTTCAAGTTTTCTAGCGGTTATCATATCCAAGGCCAAACAGGAATCAATGTTATTTTAGCTACAATATTTTTCAAATTTACATTCAAGCCGATTTTTCATTATGTTTATCATGTTTAATGGTAACTCCCGAAAAATGCCGTTAAAAGCGAAAAATTTTCAAAAAAAAGTTGCTAGGAGGGACGAGGATTTGAATTCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>TTTAACTGCTAGAATTGATCTCTTATTGCCCTCATAAGAACTGCCTGAAAGGGAAATGTCCCTGTTCCGTCTTCTTAGCTCCAATTGTCTATACCAGGCTGTCAAACACGGCGTGGCCGACTGCGGCTTTTTGGAGAGTTCCGATTTATACTCCAAACCGTTTTCCAGACTCTGATTCCGATCACCTTCCTCTTTATCCCAATCGGCATCCTATTCTCTGCGCCTCTTTTTGGTTTCGATCTCGAGAGATGGAGTTATTTGGTCACATTCTTCTACTCATTCTACCCTGTCGTTGACCCAATTCCAACCATCTTTTTCATTGACGAGTACCGGACTGCCTTTCTGAGTAAGTTCCGTCAGTTTCTAAGAATTTCAAAAAAAATATTCTTCAGACTTCTTCCGCCGAACACTAAACCGGAACCAAGTCACTCCAGTGAAGTCCATTGATATCGTACCGGAACTTCCGTAGATCGCATTAAATTTTTCCGTTTTTATTGCAYTTTCTTCAATCAAAATATTTGAATAAATATCCATCATACTTTCTGTTCTACTTTTCTCAAGAATATCCAGATGAAAATGCTGAAATTTTTCTGAAAAAATCAAAAATGAATAGCTTCTACAAAGACTATTTTCCTTTCAAGTTTTCTAGCGGTTATCATATCCAAGGCCAAACAGGAATCAATGTTATTTTAGCTACAATATTTTTCAAATTTACATTCAAGCCGATTTTTCATTATGTTTATCATGTTTAATGGTAACTCCCGAAAAATGCCGTTAAAAGCGAAAAATTTTCAAAAAAAAGTTGCTAGGAGGGACGAGGATTTGAATTCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>501 144 108 81 69 63 19 8 7</canonical_bands>
                <polymorphic_bands>564 144 108 81 69 19 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGTAAGTTCCGTCAGTTTCTA</pcr_primer_p1>
		<pcr_primer_p2>AGAAAAATTTCAGCATTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAGTAAGTTCCGTCAGTTTCTAAGAATTTCAAAAAAAATATTCTTCAGACTTCTTCCGCCGAACACTAAACCGGAACCAAGTCACTCCAGTGAAGTCCATTGATATCGTACCGGAACTTCCGTAGATCGCATTAAATTTTTCCGTTTTTATTGCACTTTCTTCAATCAAAATATTTGAATAAATATCCATCATACTTTCTGTTCTACTTTTCTCAAGAATATCCAGATGAAAATGCTGAAATTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>TGAGTAAGTTCCGTCAGTTTCTAAGAATTTCAAAAAAAATATTCTTCAGACTTCTTCCGCCGAACACTAAACCGGAACCAAGTCACTCCAGTGAAGTCCATTGATATCGTACCGGAACTTCCGTAGATCGCATTAAATTTTTCCGTTTTTATTGCAYTTTCTTCAATCAAAATATTTGAATAAATATCCATCATACTTTCTGTTCTACTTTTCTCAAGAATATCCAGATGAAAATGCTGAAATTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17367</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>214141</contig_pos>
        <strand></strand>
        <context>TTCCGTTTTT[A/T]TTGCAYTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGATATCGTACCGGAACTTCCGTAGATCGCATTAAATTTTTCCGTTTTT</left_flank>
        <right_flank>TTGCACTTTCTTCAATCAAAATATTTGAATAAATATCCATCATACTTTCT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACATGTTTAACTGCTAGAATTGATCTCTTATTGCCCTCATAAGAACTGCCTGAAAGGGAAATGTCCCTGTTCCGTCTTCTTAGCTCCAATTGTCTATACCAGGCTGTCAAACACGGCGTGGCCGACTGCGGCTTTTTGGAGAGTTCCGATTTATACTCCAAACCGTTTTCCAGACTCTGATTCCGATCACCTTCCTCTTTATCCCAATCGGCATCCTATTCTCTGCGCCTCTTTTTGGTTTCGATCTCGAGAGATGGAGTTATTTGGTCACATTCTTCTACTCATTCTACCCTGTCGTTGACCCAATTCCAACCATCTTTTTCATTGACGAGTACCGGACTGCCTTTCTGAGTAAGTTCCGTCAGTTTCTAAGAATTTCAAAAAAAATATTCTTCAGACTTCTTCCGCCGAACACTAAACCGGAACCAAGTCACTCCAGTGAAGTCCATTGATATCGTACCGGAACTTCCGTAGATCGCATTAAATTTTTCCGTTTTTATTGCACTTTCTTCAATCAAAATATTTGAATAAATATCCATCATACTTTCTGTTCTACTTTTCTCAAGAATATCCAGATGAAAATGCTGAAATTTTTCTGAAAAAATCAAAAATGAATAGCTTCTACAAAGACTATTTTCCTTTCAAGTTTTCTAGCGGTTATCATATCCAAGGCCAAACAGGAATCAATGTTATTTTAGCTACAATATTTTTCAAATTTACATTCAAGCCGATTTTTCATTATGTTTATCATGTTTAATGGTAACTCCCGAAAAATGCCGTTAAAAGCGAAAAATTTTCAAAAAAAAGTTGCTAGGAGGGACGAGGATTTGAATTCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>CACATGTTTAACTGCTAGAATTGATCTCTTATTGCCCTCATAAGAACTGCCTGAAAGGGAAATGTCCCTGTTCCGTCTTCTTAGCTCCAATTGTCTATACCAGGCTGTCAAACACGGCGTGGCCGACTGCGGCTTTTTGGAGAGTTCCGATTTATACTCCAAACCGTTTTCCAGACTCTGATTCCGATCACCTTCCTCTTTATCCCAATCGGCATCCTATTCTCTGCGCCTCTTTTTGGTTTCGATCTCGAGAGATGGAGTTATTTGGTCACATTCTTCTACTCATTCTACCCTGTCGTTGACCCAATTCCAACCATCTTTTTCATTGACGAGTACCGGACTGCCTTTCTGAGTAAGTTCCGTCAGTTTCTAAGAATTTCAAAAAAAATATTCTTCAGACTTCTTCCGCCGAACACTAAACCGGAACCAAGTCACTCCAGTGAAGTCCATTGATATCGTACCGGAACTTCCGTAGATCGCATTAAATTTTTCCGTTTTTWTTGCACTTTCTTCAATCAAAATATTTGAATAAATATCCATCATACTTTCTGTTCTACTTTTCTCAAGAATATCCAGATGAAAATGCTGAAATTTTTCTGAAAAAATCAAAAATGAATAGCTTCTACAAAGACTATTTTCCTTTCAAGTTTTCTAGCGGTTATCATATCCAAGGCCAAACAGGAATCAATGTTATTTTAGCTACAATATTTTTCAAATTTACATTCAAGCCGATTTTTCATTATGTTTATCATGTTTAATGGTAACTCCCGAAAAATGCCGTTAAAAGCGAAAAATTTTCAAAAAAAAGTTGCTAGGAGGGACGAGGATTTGAATTCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGTAAGTTCCGTCAGTTTCTA</pcr_primer_p1>
		<pcr_primer_p2>AGAAAAATTTCAGCATTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAGTAAGTTCCGTCAGTTTCTAAGAATTTCAAAAAAAATATTCTTCAGACTTCTTCCGCCGAACACTAAACCGGAACCAAGTCACTCCAGTGAAGTCCATTGATATCGTACCGGAACTTCCGTAGATCGCATTAAATTTTTCCGTTTTTATTGCACTTTCTTCAATCAAAATATTTGAATAAATATCCATCATACTTTCTGTTCTACTTTTCTCAAGAATATCCAGATGAAAATGCTGAAATTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>TGAGTAAGTTCCGTCAGTTTCTAAGAATTTCAAAAAAAATATTCTTCAGACTTCTTCCGCCGAACACTAAACCGGAACCAAGTCACTCCAGTGAAGTCCATTGATATCGTACCGGAACTTCCGTAGATCGCATTAAATTTTTCCGTTTTTWTTGCACTTTCTTCAATCAAAATATTTGAATAAATATCCATCATACTTTCTGTTCTACTTTTCTCAAGAATATCCAGATGAAAATGCTGAAATTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17368</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>213824</contig_pos>
        <strand></strand>
        <context>AGACTCTGAT[T/C]CCGATCACCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTTTTTGGAGAGTTCCGATTTATACTCCAAACCGTTTTCCAGACTCTGAT</left_flank>
        <right_flank>CCGATCACCTTCCTCTTTATCCCAATCGGCATCCTATTCTCTGCGCCTCT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATAATTCTAAACTCGCTGTGAGAGATATCAAAAACCTGTCAACGGATAAAATGTTTATTATATCATCAGCAACATTTTTGTAGTTAACATAATTTCGACACCTCTTACAGGAACATAGATAATCAATCTCAAAGCGCATGACAAGACCCCTTTCCAGAACACTGCCTTCTTCATCATTCTCTACTTTGGATACCGTACCAAAAAGATGATCAATTGTCTTACTACAAATAAAGGAGACACACGGTTTTCACAACGGTTACAAAAGCAATTGTATAACGCATTGGTTGCTCAGGTTGGTTTAAAAACCGACAACTGCACATGTTTAACTGCTAGAATTGATCTCTTATTGCCCTCATAAGAACTGCCTGAAAGGGAAATGTCCCTGTTCCGTCTTCTTAGCTCCAATTGTCTATACCAGGCTGTCAAACACGGCGTGGCCGACTGCGGCTTTTTGGAGAGTTCCGATTTATACTCCAAACCGTTTTCCAGACTCTGATTCCGATCACCTTCCTCTTTATCCCAATCGGCATCCTATTCTCTGCGCCTCTTTTTGGTTTCGATCTCGAGAGATGGAGTTATTTGGTCACATTCTTCTACTCATTCTACCCTGTCGTTGACCCAATTCCAACCATCTTTTTCATTGACGAGTACCGGACTGCCTTTCTGAGTAAGTTCCGTCAGTTTCTAAGAATTTCAAAAAAAATATTCTTCAGACTTCTTCCGCCGAACACTAAACCGGAACCAAGTCACTCCAGTGAAGTCCATTGATATCGTACCGGAACTTCCGTAGATCGCATTAAATTTTTCCGTTTTTATTGCACTTTCTTCAATCAAAATATTTGAATAAATATCCATCATACTTTCTGTTCTACTTTTCTCAAGAATATCCAGATGAAAATGCTGAAATTTTTCTGAAAAAATCAAAAATGAATAGCTTCTACAAAGACTATTTTCCTTTCAAGTTTTCTAGCGGTTATCATATCCAAGGCCAAACAGGA</canonical>
            <polymorphic>CAATAATTCTAAACTCGCTGTGAGAGATATCAAAAACCTGTCAACGGATAAAATGTTTATTATATCATCAGCAACATTTTTGTAGTTAACATAATTTCGACACCTCTTACAGGAACATAGATAATCAATCTCAAAGCGCATGACAAGACCCCTTTCCAGAACACTGCCTTCTTCATCATTCTCTACTTTGGATACCGTACCAAAAAGATGATCAATTGTCTTACTACAAATAAAGGAGACACACGGTTTTCACAACGGTTACAAAAGCAATTGTATAACGCATTGGTTGCTCAGGTTGGTTTAAAAACCGACAACTGCACATGTTTAACTGCTAGAATTGATCTCTTATTGCCCTCATAAGAACTGCCTGAAAGGGAAATGTCCCTGTTCCGTCTTCTTAGCTCCAATTGTCTATACCAGGCTGTCAAACACGGCGTGGCCGACTGCGGCTTTTTGGAGAGTTCCGATTTATACTCCAAACCGTTTTCCAGACTCTGATYCCGATCACCTTCCTCTTTATCCCAATCGGCATCCTATTCTCTGCGCCTCTTTTTGGTTTCGATCTCGAGAGATGGAGTTATTTGGTCACATTCTTCTACTCATTCTACCCTGTCGTTGACCCAATTCCAACCATCTTTTTCATTGACGAGTACCGGACTGCCTTTCTGAGTAAGTTCCGTCAGTTTCTAAGAATTTCAAAAAAAATATTCTTCAGACTTCTTCCGCCGAACACTAAACCGGAACCAAGTCACTCCAGTGAAGTCCATTGATATCGTACCGGAACTTCCGTAGATCGCATTAAATTTTTCCGTTTTTATTGCACTTTCTTCAATCAAAATATTTGAATAAATATCCATCATACTTTCTGTTCTACTTTTCTCAAGAATATCCAGATGAAAATGCTGAAATTTTTCTGAAAAAATCAAAAATGAATAGCTTCTACAAAGACTATTTTCCTTTCAAGTTTTCTAGCGGTTATCATATCCAAGGCCAAACAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>503 491 6</canonical_bands>
                <polymorphic_bands>509 491</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>465 201 165 85 47 31 6</canonical_bands>
                <polymorphic_bands>465 201 171 85 47 31</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTTATTGCCCTCATAAGAACT</pcr_primer_p1>
		<pcr_primer_p2>ATGTGACCAAATAACTCCATCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCTTATTGCCCTCATAAGAACTGCCTGAAAGGGAAATGTCCCTGTTCCGTCTTCTTAGCTCCAATTGTCTATACCAGGCTGTCAAACACGGCGTGGCCGACTGCGGCTTTTTGGAGAGTTCCGATTTATACTCCAAACCGTTTTCCAGACTCTGATTCCGATCACCTTCCTCTTTATCCCAATCGGCATCCTATTCTCTGCGCCTCTTTTTGGTTTCGATCTCGAGAGATGGAGTTATTTGGTCACAT</canonical_amplicon>
		<polymorphic_amplicon>CTCTTATTGCCCTCATAAGAACTGCCTGAAAGGGAAATGTCCCTGTTCCGTCTTCTTAGCTCCAATTGTCTATACCAGGCTGTCAAACACGGCGTGGCCGACTGCGGCTTTTTGGAGAGTTCCGATTTATACTCCAAACCGTTTTCCAGACTCTGATYCCGATCACCTTCCTCTTTATCCCAATCGGCATCCTATTCTCTGCGCCTCTTTTTGGTTTCGATCTCGAGAGATGGAGTTATTTGGTCACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17369</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>213788</contig_pos>
        <strand></strand>
        <context>TTKGAGAGTT[C/T]CGATTTATAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATACCAGGCTGTCAAACACGGCGTGGCCGACTGCGGCTTTTTGGAGAGTT</left_flank>
        <right_flank>CGATTTATACTCCAAACCGTTTTCCAGACTCTGATTCCGATCACCTTCCT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTAGTAATTCATTCTGATTGTTTCAGATTCCTTTCAATAATTCTAAACTCGCTGTGAGAGATATCAAAAACCTGTCAACGGATAAAATGTTTATTATATCATCAGCAACATTTTTGTAGTTAACATAATTTCGACACCTCTTACAGGAACATAGATAATCAATCTCAAAGCGCATGACAAGACCCCTTTCCAGAACACTGCCTTCTTCATCATTCTCTACTTTGGATACCGTACCAAAAAGATGATCAATTGTCTTACTACAAATAAAGGAGACACACGGTTTTCACAACGGTTACAAAAGCAATTGTATAACGCATTGGTTGCTCAGGTTGGTTTAAAAACCGACAACTGCACATGTTTAACTGCTAGAATTGATCTCTTATTGCCCTCATAAGAACTGCCTGAAAGGGAAATGTCCCTGTTCCGTCTTCTTAGCTCCAATTGTCTATACCAGGCTGTCAAACACGGCGTGGCCGACTGCGGCTTTTTGGAGAGTTCCGATTTATACTCCAAACCGTTTTCCAGACTCTGATTCCGATCACCTTCCTCTTTATCCCAATCGGCATCCTATTCTCTGCGCCTCTTTTTGGTTTCGATCTCGAGAGATGGAGTTATTTGGTCACATTCTTCTACTCATTCTACCCTGTCGTTGACCCAATTCCAACCATCTTTTTCATTGACGAGTACCGGACTGCCTTTCTGAGTAAGTTCCGTCAGTTTCTAAGAATTTCAAAAAAAATATTCTTCAGACTTCTTCCGCCGAACACTAAACCGGAACCAAGTCACTCCAGTGAAGTCCATTGATATCGTACCGGAACTTCCGTAGATCGCATTAAATTTTTCCGTTTTTATTGCACTTTCTTCAATCAAAATATTTGAATAAATATCCATCATACTTTCTGTTCTACTTTTCTCAAGAATATCCAGATGAAAATGCTGAAATTTTTCTGAAAAAATCAAAAATGAATAGCTTCTACAAAGACTATTTTCCTTTCAAG</canonical>
            <polymorphic>GGTTAGTAATTCATTCTGATTGTTTCAGATTCCTTTCAATAATTCTAAACTCGCTGTGAGAGATATCAAAAACCTGTCAACGGATAAAATGTTTATTATATCATCAGCAACATTTTTGTAGTTAACATAATTTCGACACCTCTTACAGGAACATAGATAATCAATCTCAAAGCGCATGACAAGACCCCTTTCCAGAACACTGCCTTCTTCATCATTCTCTACTTTGGATACCGTACCAAAAAGATGATCAATTGTCTTACTACAAATAAAGGAGACACACGGTTTTCACAACGGTTACAAAAGCAATTGTATAACGCATTGGTTGCTCAGGTTGGTTTAAAAACCGACAACTGCACATGTTTAACTGCTAGAATTGATCTCTTATTGCCCTCATAAGAACTGCCTGAAAGGGAAATGTCCCTGTTCCGTCTTCTTAGCTCCAATTGTCTATACCAGGCTGTCAAACACGGCGTGGCCGACTGCGGCTTTTTGGAGAGTTYCGATTTATACTCCAAACCGTTTTCCAGACTCTGATTCCGATCACCTTCCTCTTTATCCCAATCGGCATCCTATTCTCTGCGCCTCTTTTTGGTTTCGATCTCGAGAGATGGAGTTATTTGGTCACATTCTTCTACTCATTCTACCCTGTCGTTGACCCAATTCCAACCATCTTTTTCATTGACGAGTACCGGACTGCCTTTCTGAGTAAGTTCCGTCAGTTTCTAAGAATTTCAAAAAAAATATTCTTCAGACTTCTTCCGCCGAACACTAAACCGGAACCAAGTCACTCCAGTGAAGTCCATTGATATCGTACCGGAACTTCCGTAGATCGCATTAAATTTTTCCGTTTTTATTGCACTTTCTTCAATCAAAATATTTGAATAAATATCCATCATACTTTCTGTTCTACTTTTCTCAAGAATATCCAGATGAAAATGCTGAAATTTTTCTGAAAAAATCAAAAATGAATAGCTTCTACAAAGACTATTTTCCTTTCAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>474 201 165 49 47 31 17 10 6</canonical_bands>
                <polymorphic_bands>505 201 165 49 47 17 10 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTTATTGCCCTCATAAGAACT</pcr_primer_p1>
		<pcr_primer_p2>ATGTGACCAAATAACTCCATCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCTTATTGCCCTCATAAGAACTGCCTGAAAGGGAAATGTCCCTGTTCCGTCTTCTTAGCTCCAATTGTCTATACCAGGCTGTCAAACACGGCGTGGCCGACTGCGGCTTTTTGGAGAGTTCCGATTTATACTCCAAACCGTTTTCCAGACTCTGATTCCGATCACCTTCCTCTTTATCCCAATCGGCATCCTATTCTCTGCGCCTCTTTTTGGTTTCGATCTCGAGAGATGGAGTTATTTGGTCACAT</canonical_amplicon>
		<polymorphic_amplicon>CTCTTATTGCCCTCATAAGAACTGCCTGAAAGGGAAATGTCCCTGTTCCGTCTTCTTAGCTCCAATTGTCTATACCAGGCTGTCAAACACGGCGTGGCCGACTGCGGCTTTTTGGAGAGTTYCGATTTATACTCCAAACCGTTTTCCAGACTCTGATTCCGATCACCTTCCTCTTTATCCCAATCGGCATCCTATTCTCTGCGCCTCTTTTTGGTTTCGATCTCGAGAGATGGAGTTATTTGGTCACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17370</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>213780</contig_pos>
        <strand></strand>
        <context>GCGGCTTTTT[G/T]GAGAGTTYCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTGTCTATACCAGGCTGTCAAACACGGCGTGGCCGACTGCGGCTTTTT</left_flank>
        <right_flank>GAGAGTTCCGATTTATACTCCAAACCGTTTTCCAGACTCTGATTCCGATC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAATCATGGTTAGTAATTCATTCTGATTGTTTCAGATTCCTTTCAATAATTCTAAACTCGCTGTGAGAGATATCAAAAACCTGTCAACGGATAAAATGTTTATTATATCATCAGCAACATTTTTGTAGTTAACATAATTTCGACACCTCTTACAGGAACATAGATAATCAATCTCAAAGCGCATGACAAGACCCCTTTCCAGAACACTGCCTTCTTCATCATTCTCTACTTTGGATACCGTACCAAAAAGATGATCAATTGTCTTACTACAAATAAAGGAGACACACGGTTTTCACAACGGTTACAAAAGCAATTGTATAACGCATTGGTTGCTCAGGTTGGTTTAAAAACCGACAACTGCACATGTTTAACTGCTAGAATTGATCTCTTATTGCCCTCATAAGAACTGCCTGAAAGGGAAATGTCCCTGTTCCGTCTTCTTAGCTCCAATTGTCTATACCAGGCTGTCAAACACGGCGTGGCCGACTGCGGCTTTTTGGAGAGTTCCGATTTATACTCCAAACCGTTTTCCAGACTCTGATTCCGATCACCTTCCTCTTTATCCCAATCGGCATCCTATTCTCTGCGCCTCTTTTTGGTTTCGATCTCGAGAGATGGAGTTATTTGGTCACATTCTTCTACTCATTCTACCCTGTCGTTGACCCAATTCCAACCATCTTTTTCATTGACGAGTACCGGACTGCCTTTCTGAGTAAGTTCCGTCAGTTTCTAAGAATTTCAAAAAAAATATTCTTCAGACTTCTTCCGCCGAACACTAAACCGGAACCAAGTCACTCCAGTGAAGTCCATTGATATCGTACCGGAACTTCCGTAGATCGCATTAAATTTTTCCGTTTTTATTGCACTTTCTTCAATCAAAATATTTGAATAAATATCCATCATACTTTCTGTTCTACTTTTCTCAAGAATATCCAGATGAAAATGCTGAAATTTTTCTGAAAAAATCAAAAATGAATAGCTTCTACAAAGACTATTTTC</canonical>
            <polymorphic>GGAATCATGGTTAGTAATTCATTCTGATTGTTTCAGATTCCTTTCAATAATTCTAAACTCGCTGTGAGAGATATCAAAAACCTGTCAACGGATAAAATGTTTATTATATCATCAGCAACATTTTTGTAGTTAACATAATTTCGACACCTCTTACAGGAACATAGATAATCAATCTCAAAGCGCATGACAAGACCCCTTTCCAGAACACTGCCTTCTTCATCATTCTCTACTTTGGATACCGTACCAAAAAGATGATCAATTGTCTTACTACAAATAAAGGAGACACACGGTTTTCACAACGGTTACAAAAGCAATTGTATAACGCATTGGTTGCTCAGGTTGGTTTAAAAACCGACAACTGCACATGTTTAACTGCTAGAATTGATCTCTTATTGCCCTCATAAGAACTGCCTGAAAGGGAAATGTCCCTGTTCCGTCTTCTTAGCTCCAATTGTCTATACCAGGCTGTCAAACACGGCGTGGCCGACTGCGGCTTTTTKGAGAGTTCCGATTTATACTCCAAACCGTTTTCCAGACTCTGATTCCGATCACCTTCCTCTTTATCCCAATCGGCATCCTATTCTCTGCGCCTCTTTTTGGTTTCGATCTCGAGAGATGGAGTTATTTGGTCACATTCTTCTACTCATTCTACCCTGTCGTTGACCCAATTCCAACCATCTTTTTCATTGACGAGTACCGGACTGCCTTTCTGAGTAAGTTCCGTCAGTTTCTAAGAATTTCAAAAAAAATATTCTTCAGACTTCTTCCGCCGAACACTAAACCGGAACCAAGTCACTCCAGTGAAGTCCATTGATATCGTACCGGAACTTCCGTAGATCGCATTAAATTTTTCCGTTTTTATTGCACTTTCTTCAATCAAAATATTTGAATAAATATCCATCATACTTTCTGTTCTACTTTTCTCAAGAATATCCAGATGAAAATGCTGAAATTTTTCTGAAAAAATCAAAAATGAATAGCTTCTACAAAGACTATTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTTATTGCCCTCATAAGAACT</pcr_primer_p1>
		<pcr_primer_p2>ATGTGACCAAATAACTCCATCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCTTATTGCCCTCATAAGAACTGCCTGAAAGGGAAATGTCCCTGTTCCGTCTTCTTAGCTCCAATTGTCTATACCAGGCTGTCAAACACGGCGTGGCCGACTGCGGCTTTTTGGAGAGTTCCGATTTATACTCCAAACCGTTTTCCAGACTCTGATTCCGATCACCTTCCTCTTTATCCCAATCGGCATCCTATTCTCTGCGCCTCTTTTTGGTTTCGATCTCGAGAGATGGAGTTATTTGGTCACAT</canonical_amplicon>
		<polymorphic_amplicon>CTCTTATTGCCCTCATAAGAACTGCCTGAAAGGGAAATGTCCCTGTTCCGTCTTCTTAGCTCCAATTGTCTATACCAGGCTGTCAAACACGGCGTGGCCGACTGCGGCTTTTTKGAGAGTTCCGATTTATACTCCAAACCGTTTTCCAGACTCTGATTCCGATCACCTTCCTCTTTATCCCAATCGGCATCCTATTCTCTGCGCCTCTTTTTGGTTTCGATCTCGAGAGATGGAGTTATTTGGTCACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17371</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>258277</contig_pos>
        <strand>+</strand>
        <context>ACGTTCTGTT[C/T]AGTAKTGACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGAAATTTTGCTTCTACTTTTTCGGTGGCTGAGTTCTGAACGTTCTGTT</left_flank>
        <right_flank>AGTAGTGACTTTTGCGGTTAGAAAAGTGGAAAAAAAAATGAAATTTCTGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCTAAAAGATACTAGAAATGAATAATCTCTAGAATAATGAAGAGTCATTCAATTATGATAAGAAAATCTAGAAATTTCGGAACAAATGAGCTATGCGGTCGCAGCTGGTGATCGGTGTTTACACCTTTTACCTCGGCTACCGTAATCCTTCAGCTAACGCGTACCTCCCATAAGCTTCCCCAGGCTTCCATAGACCAAACATTGGGATGCCCGTTTCAATGTTATCATTTTTCGTCCGTCAGAAATTTTCTTACAATCTGTTGTTTATTTAAAACCAACAATTTTCAGACCACCTCATTTACTGTTGTCTGCTATTATGGATACAAAAGTTACGAAAGAATCACATCATTGATCTACGAAGGAGAGTCAGCGTACACCAGGAATCTACAGAAACAATTATACAAGGCGCTGGTTGTGCAGGTAAGGAAAACGCGCTCCAGCGAACACGAGAAATTTTGCTTCTACTTTTTCGGTGGCTGAGTTCTGAACGTTCTGTTTAGTAGTGACTTTTGCGGTTAGAAAAGTGGAAAAAAAAATGAAATTTCTGGTTAAAAATTCATAATGTTTCATTAATATTTTATCAATAAACTGTTACTGCTTGGAGATAAAACGTAGATGACAACTACAAAATTAAAGCTCTATTTTAGTTTAATATACCTAAAAACGTTAATTTTTATCTAACAAAACCTTGTAGACATTGAAAGTTGGCAATTTTCCACCAAAAAATAAGTAAATTCGTTTTGATCGATTTTTTTGCAGGCAATTATCCCAACCGTCCTAATGTATGCTCCAGTTGGTTCCTATCTAGTCCTTCCATTCTTCGGTGTCAATATTGCTCCATTCAGTAAACTTGTCACTTTTGTGTACGCTGCTTATCCGGCAGTTGATCCACTTCCATTGATGTTTATCATTGATAATTATCGGAATGCTATATCGGGTGAGTATTTCATTTAGCTCGCTTGCTGTAAGATATATCAAAAAGTAGTTAACTGACAAAA</canonical>
            <polymorphic>TCTCTAAAAGATACTAGAAATGAATAATCTCTAGAATAATGAAGAGTCATTCAATTATGATAAGAAAATCTAGAAATTTCGGAACAAATGAGCTATGCGGTCGCAGCTGGTGATCGGTGTTTACACCTTTTACCTCGGCTACCGTAATCCTTCAGCTAACGCGTACCTCCCATAAGCTTCCCCAGGCTTCCATAGACCAAACATTGGGATGCCCGTTTCAATGTTATCATTTTTCGTCCGTCAGAAATTTTCTTACAATCTGTTGTTTATTTAAAACCAACAATTTTCAGACCACCTCATTTACTGTTGTCTGCTATTATGGATACAAAAGTTACGAAAGAATCACATCATTGATCTACGAAGGAGAGTCAGCGTACACCAGGAATCTACAGAAACAATTATACAAGGCGCTGGTTGTGCAGGTAAGGAAAACGCGCTCCAGCGAACACGAGAAATTTTGCTTCTACTTTTTCGGTGGCTGAGTTCTGAACGTTCTGTTYAGTAGTGACTTTTGCGGTTAGAAAAGTGGAAAAAAAAATGAAATTTCTGGTTAAAAATTCATAATGTTTCATTAATATTTTATCAATAAACTGTTACTGCTTGGAGATAAAACGTAGATGACAACTACAAAATTAAAGCTCTATTTTAGTTTAATATACCTAAAAACGTTAATTTTTATCTAACAAAACCTTGTAGACATTGAAAGTTGGCAATTTTCCACCAAAAAATAAGTAAATTCGTTTTGATCGATTTTTTTGCAGGCAATTATCCCAACCGTCCTAATGTATGCTCCAGTTGGTTCCTATCTAGTCCTTCCATTCTTCGGTGTCAATATTGCTCCATTCAGTAAACTTGTCACTTTTGTGTACGCTGCTTATCCGGCAGTTGATCCACTTCCATTGATGTTTATCATTGATAATTATCGGAATGCTATATCGGGTGAGTATTTCATTTAGCTCGCTTGCTGTAAGATATATCAAAAAGTAGTTAACTGACAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGGATACAAAAGTTACGAAAGA</pcr_primer_p1>
		<pcr_primer_p2>AACATTATGAATTTTTAACCAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGGATACAAAAGTTACGAAAGAATCACATCATTGATCTACGAAGGAGAGTCAGCGTACACCAGGAATCTACAGAAACAATTATACAAGGCGCTGGTTGTGCAGGTAAGGAAAACGCGCTCCAGCGAACACGAGAAATTTTGCTTCTACTTTTTCGGTGGCTGAGTTCTGAACGTTCTGTTTAGTAGTGACTTTTGCGGTTAGAAAAGTGGAAAAAAAAATGAAATTTCTGGTTAAAAATTCATAATGTT</canonical_amplicon>
		<polymorphic_amplicon>ATGGATACAAAAGTTACGAAAGAATCACATCATTGATCTACGAAGGAGAGTCAGCGTACACCAGGAATCTACAGAAACAATTATACAAGGCGCTGGTTGTGCAGGTAAGGAAAACGCGCTCCAGCGAACACGAGAAATTTTGCTTCTACTTTTTCGGTGGCTGAGTTCTGAACGTTCTGTTYAGTAGTGACTTTTGCGGTTAGAAAAGTGGAAAAAAAAATGAAATTTCTGGTTAAAAATTCATAATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17372</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>258282</contig_pos>
        <strand>+</strand>
        <context>CTGTTYAGTA[G/T]TGACTTTTGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTTGCTTCTACTTTTTCGGTGGCTGAGTTCTGAACGTTCTGTTTAGTA</left_flank>
        <right_flank>TGACTTTTGCGGTTAGAAAAGTGGAAAAAAAAATGAAATTTCTGGTTAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAGATACTAGAAATGAATAATCTCTAGAATAATGAAGAGTCATTCAATTATGATAAGAAAATCTAGAAATTTCGGAACAAATGAGCTATGCGGTCGCAGCTGGTGATCGGTGTTTACACCTTTTACCTCGGCTACCGTAATCCTTCAGCTAACGCGTACCTCCCATAAGCTTCCCCAGGCTTCCATAGACCAAACATTGGGATGCCCGTTTCAATGTTATCATTTTTCGTCCGTCAGAAATTTTCTTACAATCTGTTGTTTATTTAAAACCAACAATTTTCAGACCACCTCATTTACTGTTGTCTGCTATTATGGATACAAAAGTTACGAAAGAATCACATCATTGATCTACGAAGGAGAGTCAGCGTACACCAGGAATCTACAGAAACAATTATACAAGGCGCTGGTTGTGCAGGTAAGGAAAACGCGCTCCAGCGAACACGAGAAATTTTGCTTCTACTTTTTCGGTGGCTGAGTTCTGAACGTTCTGTTTAGTAGTGACTTTTGCGGTTAGAAAAGTGGAAAAAAAAATGAAATTTCTGGTTAAAAATTCATAATGTTTCATTAATATTTTATCAATAAACTGTTACTGCTTGGAGATAAAACGTAGATGACAACTACAAAATTAAAGCTCTATTTTAGTTTAATATACCTAAAAACGTTAATTTTTATCTAACAAAACCTTGTAGACATTGAAAGTTGGCAATTTTCCACCAAAAAATAAGTAAATTCGTTTTGATCGATTTTTTTGCAGGCAATTATCCCAACCGTCCTAATGTATGCTCCAGTTGGTTCCTATCTAGTCCTTCCATTCTTCGGTGTCAATATTGCTCCATTCAGTAAACTTGTCACTTTTGTGTACGCTGCTTATCCGGCAGTTGATCCACTTCCATTGATGTTTATCATTGATAATTATCGGAATGCTATATCGGGTGAGTATTTCATTTAGCTCGCTTGCTGTAAGATATATCAAAAAGTAGTTAACTGACAAAATATTA</canonical>
            <polymorphic>AAAAGATACTAGAAATGAATAATCTCTAGAATAATGAAGAGTCATTCAATTATGATAAGAAAATCTAGAAATTTCGGAACAAATGAGCTATGCGGTCGCAGCTGGTGATCGGTGTTTACACCTTTTACCTCGGCTACCGTAATCCTTCAGCTAACGCGTACCTCCCATAAGCTTCCCCAGGCTTCCATAGACCAAACATTGGGATGCCCGTTTCAATGTTATCATTTTTCGTCCGTCAGAAATTTTCTTACAATCTGTTGTTTATTTAAAACCAACAATTTTCAGACCACCTCATTTACTGTTGTCTGCTATTATGGATACAAAAGTTACGAAAGAATCACATCATTGATCTACGAAGGAGAGTCAGCGTACACCAGGAATCTACAGAAACAATTATACAAGGCGCTGGTTGTGCAGGTAAGGAAAACGCGCTCCAGCGAACACGAGAAATTTTGCTTCTACTTTTTCGGTGGCTGAGTTCTGAACGTTCTGTTTAGTAKTGACTTTTGCGGTTAGAAAAGTGGAAAAAAAAATGAAATTTCTGGTTAAAAATTCATAATGTTTCATTAATATTTTATCAATAAACTGTTACTGCTTGGAGATAAAACGTAGATGACAACTACAAAATTAAAGCTCTATTTTAGTTTAATATACCTAAAAACGTTAATTTTTATCTAACAAAACCTTGTAGACATTGAAAGTTGGCAATTTTCCACCAAAAAATAAGTAAATTCGTTTTGATCGATTTTTTTGCAGGCAATTATCCCAACCGTCCTAATGTATGCTCCAGTTGGTTCCTATCTAGTCCTTCCATTCTTCGGTGTCAATATTGCTCCATTCAGTAAACTTGTCACTTTTGTGTACGCTGCTTATCCGGCAGTTGATCCACTTCCATTGATGTTTATCATTGATAATTATCGGAATGCTATATCGGGTGAGTATTTCATTTAGCTCGCTTGCTGTAAGATATATCAAAAAGTAGTTAACTGACAAAATATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>192 169 108 107 63 51 49 41 33 30 30 29 29 27 21 8 7 6</canonical_bands>
                <polymorphic_bands>192 169 108 107 63 51 51 49 41 33 30 29 29 27 8 7 6</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>325 262 174 151 88</canonical_bands>
                <polymorphic_bands>325 262 262 151</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>499 350 151</canonical_bands>
                <polymorphic_bands>849 151</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGGATACAAAAGTTACGAAAGA</pcr_primer_p1>
		<pcr_primer_p2>AACATTATGAATTTTTAACCAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGGATACAAAAGTTACGAAAGAATCACATCATTGATCTACGAAGGAGAGTCAGCGTACACCAGGAATCTACAGAAACAATTATACAAGGCGCTGGTTGTGCAGGTAAGGAAAACGCGCTCCAGCGAACACGAGAAATTTTGCTTCTACTTTTTCGGTGGCTGAGTTCTGAACGTTCTGTTTAGTAGTGACTTTTGCGGTTAGAAAAGTGGAAAAAAAAATGAAATTTCTGGTTAAAAATTCATAATGTT</canonical_amplicon>
		<polymorphic_amplicon>ATGGATACAAAAGTTACGAAAGAATCACATCATTGATCTACGAAGGAGAGTCAGCGTACACCAGGAATCTACAGAAACAATTATACAAGGCGCTGGTTGTGCAGGTAAGGAAAACGCGCTCCAGCGAACACGAGAAATTTTGCTTCTACTTTTTCGGTGGCTGAGTTCTGAACGTTCTGTTTAGTAKTGACTTTTGCGGTTAGAAAAGTGGAAAAAAAAATGAAATTTCTGGTTAAAAATTCATAATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17373</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>258506</contig_pos>
        <strand></strand>
        <context>caccaaaaaa[T/A]AAGTAAATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCTAACAAAACCTTGTAGACATTGAAAGTTGGCAATTTTCCACCAAAAAA</left_flank>
        <right_flank>AAGTAAATTCGTTTTGATCGATTTTTTTGCAGGCAATTATCCCAACCGTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCGTCCGTCAGAAATTTTCTTACAATCTGTTGTTTATTTAAAACCAACAATTTTCAGACCACCTCATTTACTGTTGTCTGCTATTATGGATACAAAAGTTACGAAAGAATCACATCATTGATCTACGAAGGAGAGTCAGCGTACACCAGGAATCTACAGAAACAATTATACAAGGCGCTGGTTGTGCAGGTAAGGAAAACGCGCTCCAGCGAACACGAGAAATTTTGCTTCTACTTTTTCGGTGGCTGAGTTCTGAACGTTCTGTTTAGTAGTGACTTTTGCGGTTAGAAAAGTGGAAAAAAAAATGAAATTTCTGGTTAAAAATTCATAATGTTTCATTAATATTTTATCAATAAACTGTTACTGCTTGGAGATAAAACGTAGATGACAACTACAAAATTAAAGCTCTATTTTAGTTTAATATACCTAAAAACGTTAATTTTTATCTAACAAAACCTTGTAGACATTGAAAGTTGGCAATTTTCCACCAAAAAATAAGTAAATTCGTTTTGATCGATTTTTTTGCAGGCAATTATCCCAACCGTCCTAATGTATGCTCCAGTTGGTTCCTATCTAGTCCTTCCATTCTTCGGTGTCAATATTGCTCCATTCAGTAAACTTGTCACTTTTGTGTACGCTGCTTATCCGGCAGTTGATCCACTTCCATTGATGTTTATCATTGATAATTATCGGAATGCTATATCGGGTGAGTATTTCATTTAGCTCGCTTGCTGTAAGATATATCAAAAAGTAGTTAACTGACAAAATATTATTGATATTCAGATAAACCATTTGTCAGTTGACCACTTTTTGATATCTTTCACAGGAAATGAGATAAATTGGCTCAAAGTTAGAGGGTCAGGTTTAACGGAAGTGTAAATTCTTAAAAAACGAAAAAACGTTTTTACCTCCTAAATATGTTGTTTAAACTGTGGCATTAAAAATGTACAATTCAAAATACCGTAAACACTCTAATATATAGCCCCTCCTAATTGA</canonical>
            <polymorphic>TTTTTCGTCCGTCAGAAATTTTCTTACAATCTGTTGTTTATTTAAAACCAACAATTTTCAGACCACCTCATTTACTGTTGTCTGCTATTATGGATACAAAAGTTACGAAAGAATCACATCATTGATCTACGAAGGAGAGTCAGCGTACACCAGGAATCTACAGAAACAATTATACAAGGCGCTGGTTGTGCAGGTAAGGAAAACGCGCTCCAGCGAACACGAGAAATTTTGCTTCTACTTTTTCGGTGGCTGAGTTCTGAACGTTCTGTTTAGTAGTGACTTTTGCGGTTAGAAAAGTGGAAAAAAAAATGAAATTTCTGGTTAAAAATTCATAATGTTTCATTAATATTTTATCAATAAACTGTTACTGCTTGGAGATAAAACGTAGATGACAACTACAAAATTAAAGCTCTATTTTAGTTTAATATACCTAAAAACGTTAATTTTTATCTAACAAAACCTTGTAGACATTGAAAGTTGGCAATTTTCCACCAAAAAAWAAGTAAATTCGTTTTGATCGATTTTTTTGCAGGCAATTATCCCAACCGTCCTAATGTATGCTCCAGTTGGTTCCTATCTAGTCCTTCCATTCTTCGGTGTCAATATTGCTCCATTCAGTAAACTTGTCACTTTTGTGTACGCTGCTTATCCGGCAGTTGATCCACTTCCATTGATGTTTATCATTGATAATTATCGGAATGCTATATCGGGTGAGTATTTCATTTAGCTCGCTTGCTGTAAGATATATCAAAAAGTAGTTAACTGACAAAATATTATTGATATTCAGATAAACCATTTGTCAGTTGACCACTTTTTGATATCTTTCACAGGAAATGAGATAAATTGGCTCAAAGTTAGAGGGTCAGGTTTAACGGAAGTGTAAATTCTTAAAAAACGAAAAAACGTTTTTACCTCCTAAATATGTTGTTTAAACTGTGGCATTAAAAATGTACAATTCAAAATACCGTAAACACTCTAATATATAGCCCCTCCTAATTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAAACTGTTACTGCTTGGAGA</pcr_primer_p1>
		<pcr_primer_p2>GAAGAATGGAAGGACTAGATAGG</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AATAAACTGTTACTGCTTGGAGATAAAACGTAGATGACAACTACAAAATTAAAGCTCTATTTTAGTTTAATATACCTAAAAACGTTAATTTTTATCTAACAAAACCTTGTAGACATTGAAAGTTGGCAATTTTCCACCAAAAAATAAGTAAATTCGTTTTGATCGATTTTTTTGCAGGCAATTATCCCAACCGTCCTAATGTATGCTCCAGTTGGTTCCTATCTAGTCCTTCCATTCTTC</canonical_amplicon>
		<polymorphic_amplicon>AATAAACTGTTACTGCTTGGAGATAAAACGTAGATGACAACTACAAAATTAAAGCTCTATTTTAGTTTAATATACCTAAAAACGTTAATTTTTATCTAACAAAACCTTGTAGACATTGAAAGTTGGCAATTTTCCACCAAAAAAWAAGTAAATTCGTTTTGATCGATTTTTTTGCAGGCAATTATCCCAACCGTCCTAATGTATGCTCCAGTTGGTTCCTATCTAGTCCTTCCATTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17374</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>259537</contig_pos>
        <strand>+</strand>
        <context>AAACTTTCTA[C/G]ATGTTGTTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGCAATAAAAATTTTTGGTCGGAGTCCCCTTTAAGAAATGAAACTTTCTA</left_flank>
        <right_flank>ATGTTGTTGAACGAGTGAGAAGTGCTTCGGACGACGTTCTTCAATTTATT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGCTCCAAAATAAAGAACGCCACCCTCCAATTGAATGCCACCTCTAGAATGCTACCTCAAAAAATAATTTACGATAAACCAGATTATTGAATTGTTGCTTTTTAGAGAGGGTTGGCCACATTGTGAAATGCGCAAGTAGATGATTTTATGACTTTATATCTTGATTATTTCCCACTTTTCGTATTTTCTCAAAATATTCTGAGCATCATCCAAATCTTTGCAAAAAACTTAAGTAACGAATAATAGAGTGCCACCCTCTAATTGAATGTCACCCTCTANNNNNNNNNNGTGCCGCGGTCTACGTTTCTCGCTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGGCGTTTTTCGGGGATTTCGGATTTTTTTTGATTTTTTTCGCAATAATATTCGGAAAATAGATAACTTTTAACACATTTTAATGCAATAAAAATTTTTGGTCGGAGTCCCCTTTAAGAAATGAAACTTTCTACATGTTGTTGAACGAGTGAGAAGTGCTTCGGACGACGTTCTTCAATTTATTGCTAGTTGTTGCATCTCCAAAGTTTCGGAAGAAGGTATATTGAATTATTTTAAGTTTAGTTCATAATTTGTTTGTAGGAGTGCAAAGGTTCTTGTCATCGCACGATGAGGAGTTCGCAAGAAAGGTGAAAGACCTATGGAATGTGAAAAGCAACGCCTATAGCCTTCATCACTTCTGTAATAATTGTGGGAAGAAAACTGGACCGAAAAAAAAGGTAAATCATTTTGTAAGAAATTAATAGAAACAATTTCTATTTAGTTGTGGAAAAGACCCCATGAAGTTTGTAAGAAATGGCATTATGCCTCAGCTGAAAGAAATCATGCAGTACCACATAGAAGACGTTTTGCAAAGAAGGGAGAATTTGAGAAGGGGAGAGGAGAAAATGCACAATCTGGGAGCTCCAATTTTTAGAAGAGTTTGGCAGCAAGAAACACCTAGTTCCCAACATCT</canonical>
            <polymorphic>TGTGCTCCAAAATAAAGAACGCCACCCTCCAATTGAATGCCACCTCTAGAATGCTACCTCAAAAAATAATTTACGATAAACCAGATTATTGAATTGTTGCTTTTTAGAGAGGGTTGGCCACATTGTGAAATGCGCAAGTAGATGATTTTATGACTTTATATCTTGATTATTTCCCACTTTTCGTATTTTCTCAAAATATTCTGAGCATCATCCAAATCTTTGCAAAAAACTTAAGTAACGAATAATAGAGTGCCACCCTCTAATTGAATGTCACCCTCTANNNNNNNNNNGTGCCGCGGTCTACGTTTCTCGCTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGGCGTTTTTCGGGGATTTCGGATTTTTTTTGATTTTTTTCGCAATAATATTCGGAAAATAGATAACTTTTAACACATTTTAATGCAATAAAAATTTTTGGTCGGAGTCCCCTTTAAGAAATGAAACTTTCTASATGTTGTTGAACGAGTGAGAAGTGCTTCGGACGACGTTCTTCAATTTATTGCTAGTTGTTGCATCTCCAAAGTTTCGGAAGAAGGTATATTGAATTATTTTAAGTTTAGTTCATAATTTGTTTGTAGGAGTGCAAAGGTTCTTGTCATCGCACGATGAGGAGTTCGCAAGAAAGGTGAAAGACCTATGGAATGTGAAAAGCAACGCCTATAGCCTTCATCACTTCTGTAATAATTGTGGGAAGAAAACTGGACCGAAAAAAAAGGTAAATCATTTTGTAAGAAATTAATAGAAACAATTTCTATTTAGTTGTGGAAAAGACCCCATGAAGTTTGTAAGAAATGGCATTATGCCTCAGCTGAAAGAAATCATGCAGTACCACATAGAAGACGTTTTGCAAAGAAGGGAGAATTTGAGAAGGGGAGAGGAGAAAATGCACAATCTGGGAGCTCCAATTTTTAGAAGAGTTTGGCAGCAAGAAACACCTAGTTCCCAACATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 324 131 45</canonical_bands>
                <polymorphic_bands>824 131 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAACTGTGGCATTAAAAATGTA</pcr_primer_p1>
		<pcr_primer_p2>CTAGCAATAAATTGAAGAACGTC</pcr_primer_p2>
		<pcr_amplicon_size>657</pcr_amplicon_size>
		<canonical_amplicon>ACATGTTGTTGAACGAGTGAGAAGTGCTTCGGACGACGTTCTTCAATTTATTGCTAG</canonical_amplicon>
		<polymorphic_amplicon>ASATGTTGTTGAACGAGTGAGAAGTGCTTCGGACGACGTTCTTCAATTTATTGCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17376</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>259715</contig_pos>
        <strand>+</strand>
        <context>AAGAAAGGTG[A/G]AAGACCTATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGTGCAAAGGTTCTTGTCATCGCACGATGAGGAGTTCGCAAGAAAGGTG</left_flank>
        <right_flank>AAGACCTATGGAATGTGAAAAGCAACGCCTATAGCCTTCATCACTTCTGT</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGTATTTTCTCAAAATATTCTGAGCATCATCCAAATCTTTGCAAAAAACTTAAGTAACGAATAATAGAGTGCCACCCTCTAATTGAATGTCACCCTCTANNNNNNNNNNGTGCCGCGGTCTACGTTTCTCGCTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGGCGTTTTTCGGGGATTTCGGATTTTTTTTGATTTTTTTCGCAATAATATTCGGAAAATAGATAACTTTTAACACATTTTAATGCAATAAAAATTTTTGGTCGGAGTCCCCTTTAAGAAATGAAACTTTCTACATGTTGTTGAACGAGTGAGAAGTGCTTCGGACGACGTTCTTCAATTTATTGCTAGTTGTTGCATCTCCAAAGTTTCGGAAGAAGGTATATTGAATTATTTTAAGTTTAGTTCATAATTTGTTTGTAGGAGTGCAAAGGTTCTTGTCATCGCACGATGAGGAGTTCGCAAGAAAGGTGAAAGACCTATGGAATGTGAAAAGCAACGCCTATAGCCTTCATCACTTCTGTAATAATTGTGGGAAGAAAACTGGACCGAAAAAAAAGGTAAATCATTTTGTAAGAAATTAATAGAAACAATTTCTATTTAGTTGTGGAAAAGACCCCATGAAGTTTGTAAGAAATGGCATTATGCCTCAGCTGAAAGAAATCATGCAGTACCACATAGAAGACGTTTTGCAAAGAAGGGAGAATTTGAGAAGGGGAGAGGAGAAAATGCACAATCTGGGAGCTCCAATTTTTAGAAGAGTTTGGCAGCAAGAAACACCTAGTTCCCAACATCTCCATCTGTCTGGAATCTTGTCAGTTGATGGAGTCAGTGTACCAGGATCTACGAAGTAATAGTTTTACTTTGTGATATGATAACTCTTAACTGTTTAGGAAGCTATGGCCGGTGTCTGTTATGATTGTGGATCTTAGCACGGCTGACATGCAGAAGAGTTCTAACATTATTCTGGAAGG</canonical>
            <polymorphic>TTTCGTATTTTCTCAAAATATTCTGAGCATCATCCAAATCTTTGCAAAAAACTTAAGTAACGAATAATAGAGTGCCACCCTCTAATTGAATGTCACCCTCTANNNNNNNNNNGTGCCGCGGTCTACGTTTCTCGCTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGGCGTTTTTCGGGGATTTCGGATTTTTTTTGATTTTTTTCGCAATAATATTCGGAAAATAGATAACTTTTAACACATTTTAATGCAATAAAAATTTTTGGTCGGAGTCCCCTTTAAGAAATGAAACTTTCTACATGTTGTTGAACGAGTGAGAAGTGCTTCGGACGACGTTCTTCAATTTATTGCTAGTTGTTGCATCTCCAAAGTTTCGGAAGAAGGTATATTGAATTATTTTAAGTTTAGTTCATAATTTGTTTGTAGGAGTGCAAAGGTTCTTGTCATCGCACGATGAGGAGTTCGCAAGAAAGGTGRAAGACCTATGGAATGTGAAAAGCAACGCCTATAGCCTTCATCACTTCTGTAATAATTGTGGGAAGAAAACTGGACCGAAAAAAAAGGTAAATCATTTTGTAAGAAATTAATAGAAACAATTTCTATTTAGTTGTGGAAAAGACCCCATGAAGTTTGTAAGAAATGGCATTATGCCTCAGCTGAAAGAAATCATGCAGTACCACATAGAAGACGTTTTGCAAAGAAGGGAGAATTTGAGAAGGGGAGAGGAGAAAATGCACAATCTGGGAGCTCCAATTTTTAGAAGAGTTTGGCAGCAAGAAACACCTAGTTCCCAACATCTCCATCTGTCTGGAATCTTGTCAGTTGATGGAGTCAGTGTACCAGGATCTACGAAGTAATAGTTTTACTTTGTGATATGATAACTCTTAACTGTTTAGGAAGCTATGGCCGGTGTCTGTTATGATTGTGGATCTTAGCACGGCTGACATGCAGAAGAGTTCTAACATTATTCTGGAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGTTTCGGAAGAAGGTATATT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCCACAACTAAATAGAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGTTTCGGAAGAAGGTATATTGAATTATTTTAAGTTTAGTTCATAATTTGTTTGTAGGAGTGCAAAGGTTCTTGTCATCGCACGATGAGGAGTTCGCAAGAAAGGTGAAAGACCTATGGAATGTGAAAAGCAACGCCTATAGCCTTCATCACTTCTGTAATAATTGTGGGAAGAAAACTGGACCGAAAAAAAAGGTAAATCATTTTGTAAGAAATTAATAGAAACAATTTCTATTTAGTTGTGGAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAGTTTCGGAAGAAGGTATATTGAATTATTTTAAGTTTAGTTCATAATTTGTTTGTAGGAGTGCAAAGGTTCTTGTCATCGCACGATGAGGAGTTCGCAAGAAAGGTGRAAGACCTATGGAATGTGAAAAGCAACGCCTATAGCCTTCATCACTTCTGTAATAATTGTGGGAAGAAAACTGGACCGAAAAAAAAGGTAAATCATTTTGTAAGAAATTAATAGAAACAATTTCTATTTAGTTGTGGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17377</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>261354</contig_pos>
        <strand>+</strand>
        <context>CAGCTCCYKK[C/T]AAATGAGATC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATACAGTAGTCGACTAAAGAAAAACTTCTGTGAGAGTGCCAGCTCCCGG</left_flank>
        <right_flank>AAATGAGATCTTTCAAATATTAATAAAAAGATACCATGCAGGGTTCTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACCATCTGAGCTCTCAAATGTCCACAAGAACCGGAATGGAACTGATAAGCTTACGGTAAGGAAATAAACTTTGAAAGTCTGAATTCCCTTTTCAGAAATTCCGTTGTGTGCTCTCATCTGTTGCCATCCATTCTGACGTGATCGGTCCTAAAGGAAGGTTTACTATTATAGCCCTTGCAATGACCGTGAATCGAATGTTCACCAATGCAAACGCTAGAGGTGTTTTTGACATCCAAATGACCGCAGCAGCGAATTGGTTCATTCAAGAGGCCAGTACAGAATACTTGTCTTCTTAATGCCACGTAAGAATCCCTTCTCGAATATAGTGAGTTTGGGAATGCGTTGCAGGAATATTTGTATCATCTTGCGGAGTCCAACAAGATGTATCGAAATGTGGGTCCAATCTCCACGTTTTCGTTTGAGAGCTCATACCAGTTTGTCTTGATGGGATACAGTAGTCGACTAAAGAAAAACTTCTGTGAGAGTGCCAGCTCCCGGTAAATGAGATCTTTCAAATATTAATAAAAAGATACCATGCAGGGTTCTTCTACACAACGCTGTGACACATGAAATCGCTAAAAGGTCCAAAAACCCTTCAAAGAAGTTAGCTCAGTTTCTATCACATACCAAAGGGCTTGTTCCTAGAAAGGAAACGATGAGAAATCCGGTGGATTCTCCAAATCAGATCGATGCAGAAGTCCTGAACGGGCAGTCACAATTTTTTTAGGCCTACTTTTATGACTTATTGCAACAAGTCGTAACCGTAGAAATCGATGGTTCGTCAAAAAAAGAACCCGCCGAAAGACAAAAAGTCCCCGGCCGTTTCGGTGAAATCACCTGCGTTAGAAGATTCTGAAGATGTCACGAAAATTTCGTCTAATTTGGAATCCCACGAAAAATCTTTCACCGATTTGAAGCGAATGCGATTTCCATTAATCGTAAGTGATCATTTTGTTATATAGCTATTAACGTGTTTTTTACAGAGAGATGGAGAAAATT</canonical>
            <polymorphic>TACCATCTGAGCTCTCAAATGTCCACAAGAACCGGAATGGAACTGATAAGCTTACGGTAAGGAAATAAACTTTGAAAGTCTGAATTCCCTTTTCAGAAATTCCGTTGTGTGCTCTCATCTGTTGCCATCCATTCTGACGTGATCGGTCCTAAAGGAAGGTTTACTATTATAGCCCTTGCAATGACCGTGAATCGAATGTTCACCAATGCAAACGCTAGAGGTGTTTTTGACATCCAAATGACCGCAGCAGCGAATTGGTTCATTCAAGAGGCCAGTACAGAATACTTGTCTTCTTAATGCCACGTAAGAATCCCTTCTCGAATATAGTGAGTTTGGGAATGCGTTGCAGGAATATTTGTATCATCTTGCGGAGTCCAACAAGATGTATCGAAATGTGGGTCCAATCTCCACGTTTTCGTTTGAGAGCTCATACCAGTTTGTCTTGATGGGATACAGTAGTCGACTAAAGAAAAACTTCTGTGAGAGTGCCAGCTCCCGGYAAATGAGATCTTTCAAATATTAATAAAAAGATACCATGCAGGGTTCTTCTACACAACGCTGTGACACATGAAATCGCTAAAAGGTCCAAAAACCCTTCAAAGAAGTTAGCTCAGTTTCTATCACATACCAAAGGGCTTGTTCCTAGAAAGGAAACGATGAGAAATCCGGTGGATTCTCCAAATCAGATCGATGCAGAAGTCCTGAACGGGCAGTCACAATTTTTTTAGGCCTACTTTTATGACTTATTGCAACAAGTCGTAACCGTAGAAATCGATGGTTCGTCAAAAAAAGAACCCGCCGAAAGACAAAAAGTCCCCGGCCGTTTCGGTGAAATCACCTGCGTTAGAAGATTCTGAAGATGTCACGAAAATTTCGTCTAATTTGGAATCCCACGAAAAATCTTTCACCGATTTGAAGCGAATGCGATTTCCATTAATCGTAAGTGATCATTTTGTTATATAGCTATTAACGTGTTTTTTACAGAGAGATGGAGAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCCAACAAGATGTATCGAAAT</pcr_primer_p1>
		<pcr_primer_p2>GAAACTGAGCTAACTTCTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTCCAACAAGATGTATCGAAATGTGGGTCCAATCTCCACGTTTTCGTTTGAGAGCTCATACCAGTTTGTCTTGATGGGATACAGTAGTCGACTAAAGAAAAACTTCTGTGAGAGTGCCAGCTCCCGGTAAATGAGATCTTTCAAATATTAATAAAAAGATACCATGCAGGGTTCTTCTACACAACGCTGTGACACATGAAATCGCTAAAAGGTCCAAAAACCCTTCAAAGAAGTTAGCTCAGTTTC</canonical_amplicon>
		<polymorphic_amplicon>GTCCAACAAGATGTATCGAAATGTGGGTCCAATCTCCACGTTTTCGTTTGAGAGCTCATACCAGTTTGTCTTGATGGGATACAGTAGTCGACTAAAGAAAAACTTCTGTGAGAGTGCCAGCTCCCGGYAAATGAGATCTTTCAAATATTAATAAAAAGATACCATGCAGGGTTCTTCTACACAACGCTGTGACACATGAAATCGCTAAAAGGTCCAAAAACCCTTCAAAGAAGTTAGCTCAGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17378</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>261353</contig_pos>
        <strand>+</strand>
        <context>CCAGCTCCYK[G/T]YAAATGAGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGATACAGTAGTCGACTAAAGAAAAACTTCTGTGAGAGTGCCAGCTCCCG</left_flank>
        <right_flank>TAAATGAGATCTTTCAAATATTAATAAAAAGATACCATGCAGGGTTCTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTACCATCTGAGCTCTCAAATGTCCACAAGAACCGGAATGGAACTGATAAGCTTACGGTAAGGAAATAAACTTTGAAAGTCTGAATTCCCTTTTCAGAAATTCCGTTGTGTGCTCTCATCTGTTGCCATCCATTCTGACGTGATCGGTCCTAAAGGAAGGTTTACTATTATAGCCCTTGCAATGACCGTGAATCGAATGTTCACCAATGCAAACGCTAGAGGTGTTTTTGACATCCAAATGACCGCAGCAGCGAATTGGTTCATTCAAGAGGCCAGTACAGAATACTTGTCTTCTTAATGCCACGTAAGAATCCCTTCTCGAATATAGTGAGTTTGGGAATGCGTTGCAGGAATATTTGTATCATCTTGCGGAGTCCAACAAGATGTATCGAAATGTGGGTCCAATCTCCACGTTTTCGTTTGAGAGCTCATACCAGTTTGTCTTGATGGGATACAGTAGTCGACTAAAGAAAAACTTCTGTGAGAGTGCCAGCTCCCGGTAAATGAGATCTTTCAAATATTAATAAAAAGATACCATGCAGGGTTCTTCTACACAACGCTGTGACACATGAAATCGCTAAAAGGTCCAAAAACCCTTCAAAGAAGTTAGCTCAGTTTCTATCACATACCAAAGGGCTTGTTCCTAGAAAGGAAACGATGAGAAATCCGGTGGATTCTCCAAATCAGATCGATGCAGAAGTCCTGAACGGGCAGTCACAATTTTTTTAGGCCTACTTTTATGACTTATTGCAACAAGTCGTAACCGTAGAAATCGATGGTTCGTCAAAAAAAGAACCCGCCGAAAGACAAAAAGTCCCCGGCCGTTTCGGTGAAATCACCTGCGTTAGAAGATTCTGAAGATGTCACGAAAATTTCGTCTAATTTGGAATCCCACGAAAAATCTTTCACCGATTTGAAGCGAATGCGATTTCCATTAATCGTAAGTGATCATTTTGTTATATAGCTATTAACGTGTTTTTTACAGAGAGATGGAGAAAAT</canonical>
            <polymorphic>CTACCATCTGAGCTCTCAAATGTCCACAAGAACCGGAATGGAACTGATAAGCTTACGGTAAGGAAATAAACTTTGAAAGTCTGAATTCCCTTTTCAGAAATTCCGTTGTGTGCTCTCATCTGTTGCCATCCATTCTGACGTGATCGGTCCTAAAGGAAGGTTTACTATTATAGCCCTTGCAATGACCGTGAATCGAATGTTCACCAATGCAAACGCTAGAGGTGTTTTTGACATCCAAATGACCGCAGCAGCGAATTGGTTCATTCAAGAGGCCAGTACAGAATACTTGTCTTCTTAATGCCACGTAAGAATCCCTTCTCGAATATAGTGAGTTTGGGAATGCGTTGCAGGAATATTTGTATCATCTTGCGGAGTCCAACAAGATGTATCGAAATGTGGGTCCAATCTCCACGTTTTCGTTTGAGAGCTCATACCAGTTTGTCTTGATGGGATACAGTAGTCGACTAAAGAAAAACTTCTGTGAGAGTGCCAGCTCCCGKTAAATGAGATCTTTCAAATATTAATAAAAAGATACCATGCAGGGTTCTTCTACACAACGCTGTGACACATGAAATCGCTAAAAGGTCCAAAAACCCTTCAAAGAAGTTAGCTCAGTTTCTATCACATACCAAAGGGCTTGTTCCTAGAAAGGAAACGATGAGAAATCCGGTGGATTCTCCAAATCAGATCGATGCAGAAGTCCTGAACGGGCAGTCACAATTTTTTTAGGCCTACTTTTATGACTTATTGCAACAAGTCGTAACCGTAGAAATCGATGGTTCGTCAAAAAAAGAACCCGCCGAAAGACAAAAAGTCCCCGGCCGTTTCGGTGAAATCACCTGCGTTAGAAGATTCTGAAGATGTCACGAAAATTTCGTCTAATTTGGAATCCCACGAAAAATCTTTCACCGATTTGAAGCGAATGCGATTTCCATTAATCGTAAGTGATCATTTTGTTATATAGCTATTAACGTGTTTTTTACAGAGAGATGGAGAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>497 321 182</canonical_bands>
                <polymorphic_bands>818 182</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>497 321 182</canonical_bands>
                <polymorphic_bands>818 182</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>464 182 170 151 33</canonical_bands>
                <polymorphic_bands>634 182 151 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCCAACAAGATGTATCGAAAT</pcr_primer_p1>
		<pcr_primer_p2>GAAACTGAGCTAACTTCTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTCCAACAAGATGTATCGAAATGTGGGTCCAATCTCCACGTTTTCGTTTGAGAGCTCATACCAGTTTGTCTTGATGGGATACAGTAGTCGACTAAAGAAAAACTTCTGTGAGAGTGCCAGCTCCCGGTAAATGAGATCTTTCAAATATTAATAAAAAGATACCATGCAGGGTTCTTCTACACAACGCTGTGACACATGAAATCGCTAAAAGGTCCAAAAACCCTTCAAAGAAGTTAGCTCAGTTTC</canonical_amplicon>
		<polymorphic_amplicon>GTCCAACAAGATGTATCGAAATGTGGGTCCAATCTCCACGTTTTCGTTTGAGAGCTCATACCAGTTTGTCTTGATGGGATACAGTAGTCGACTAAAGAAAAACTTCTGTGAGAGTGCCAGCTCCCGKTAAATGAGATCTTTCAAATATTAATAAAAAGATACCATGCAGGGTTCTTCTACACAACGCTGTGACACATGAAATCGCTAAAAGGTCCAAAAACCCTTCAAAGAAGTTAGCTCAGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17379</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>261352</contig_pos>
        <strand>+</strand>
        <context>GCCAGCTCCY[G/T]KYAAATGAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGGATACAGTAGTCGACTAAAGAAAAACTTCTGTGAGAGTGCCAGCTCCC</left_flank>
        <right_flank>GTAAATGAGATCTTTCAAATATTAATAAAAAGATACCATGCAGGGTTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTACCATCTGAGCTCTCAAATGTCCACAAGAACCGGAATGGAACTGATAAGCTTACGGTAAGGAAATAAACTTTGAAAGTCTGAATTCCCTTTTCAGAAATTCCGTTGTGTGCTCTCATCTGTTGCCATCCATTCTGACGTGATCGGTCCTAAAGGAAGGTTTACTATTATAGCCCTTGCAATGACCGTGAATCGAATGTTCACCAATGCAAACGCTAGAGGTGTTTTTGACATCCAAATGACCGCAGCAGCGAATTGGTTCATTCAAGAGGCCAGTACAGAATACTTGTCTTCTTAATGCCACGTAAGAATCCCTTCTCGAATATAGTGAGTTTGGGAATGCGTTGCAGGAATATTTGTATCATCTTGCGGAGTCCAACAAGATGTATCGAAATGTGGGTCCAATCTCCACGTTTTCGTTTGAGAGCTCATACCAGTTTGTCTTGATGGGATACAGTAGTCGACTAAAGAAAAACTTCTGTGAGAGTGCCAGCTCCCGGTAAATGAGATCTTTCAAATATTAATAAAAAGATACCATGCAGGGTTCTTCTACACAACGCTGTGACACATGAAATCGCTAAAAGGTCCAAAAACCCTTCAAAGAAGTTAGCTCAGTTTCTATCACATACCAAAGGGCTTGTTCCTAGAAAGGAAACGATGAGAAATCCGGTGGATTCTCCAAATCAGATCGATGCAGAAGTCCTGAACGGGCAGTCACAATTTTTTTAGGCCTACTTTTATGACTTATTGCAACAAGTCGTAACCGTAGAAATCGATGGTTCGTCAAAAAAAGAACCCGCCGAAAGACAAAAAGTCCCCGGCCGTTTCGGTGAAATCACCTGCGTTAGAAGATTCTGAAGATGTCACGAAAATTTCGTCTAATTTGGAATCCCACGAAAAATCTTTCACCGATTTGAAGCGAATGCGATTTCCATTAATCGTAAGTGATCATTTTGTTATATAGCTATTAACGTGTTTTTTACAGAGAGATGGAGAAAA</canonical>
            <polymorphic>TCTACCATCTGAGCTCTCAAATGTCCACAAGAACCGGAATGGAACTGATAAGCTTACGGTAAGGAAATAAACTTTGAAAGTCTGAATTCCCTTTTCAGAAATTCCGTTGTGTGCTCTCATCTGTTGCCATCCATTCTGACGTGATCGGTCCTAAAGGAAGGTTTACTATTATAGCCCTTGCAATGACCGTGAATCGAATGTTCACCAATGCAAACGCTAGAGGTGTTTTTGACATCCAAATGACCGCAGCAGCGAATTGGTTCATTCAAGAGGCCAGTACAGAATACTTGTCTTCTTAATGCCACGTAAGAATCCCTTCTCGAATATAGTGAGTTTGGGAATGCGTTGCAGGAATATTTGTATCATCTTGCGGAGTCCAACAAGATGTATCGAAATGTGGGTCCAATCTCCACGTTTTCGTTTGAGAGCTCATACCAGTTTGTCTTGATGGGATACAGTAGTCGACTAAAGAAAAACTTCTGTGAGAGTGCCAGCTCCCKGTAAATGAGATCTTTCAAATATTAATAAAAAGATACCATGCAGGGTTCTTCTACACAACGCTGTGACACATGAAATCGCTAAAAGGTCCAAAAACCCTTCAAAGAAGTTAGCTCAGTTTCTATCACATACCAAAGGGCTTGTTCCTAGAAAGGAAACGATGAGAAATCCGGTGGATTCTCCAAATCAGATCGATGCAGAAGTCCTGAACGGGCAGTCACAATTTTTTTAGGCCTACTTTTATGACTTATTGCAACAAGTCGTAACCGTAGAAATCGATGGTTCGTCAAAAAAAGAACCCGCCGAAAGACAAAAAGTCCCCGGCCGTTTCGGTGAAATCACCTGCGTTAGAAGATTCTGAAGATGTCACGAAAATTTCGTCTAATTTGGAATCCCACGAAAAATCTTTCACCGATTTGAAGCGAATGCGATTTCCATTAATCGTAAGTGATCATTTTGTTATATAGCTATTAACGTGTTTTTTACAGAGAGATGGAGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>498 321 181</canonical_bands>
                <polymorphic_bands>819 181</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>498 321 181</canonical_bands>
                <polymorphic_bands>819 181</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>464 181 170 151 34</canonical_bands>
                <polymorphic_bands>634 181 151 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCCAACAAGATGTATCGAAAT</pcr_primer_p1>
		<pcr_primer_p2>GAAACTGAGCTAACTTCTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTCCAACAAGATGTATCGAAATGTGGGTCCAATCTCCACGTTTTCGTTTGAGAGCTCATACCAGTTTGTCTTGATGGGATACAGTAGTCGACTAAAGAAAAACTTCTGTGAGAGTGCCAGCTCCCGGTAAATGAGATCTTTCAAATATTAATAAAAAGATACCATGCAGGGTTCTTCTACACAACGCTGTGACACATGAAATCGCTAAAAGGTCCAAAAACCCTTCAAAGAAGTTAGCTCAGTTTC</canonical_amplicon>
		<polymorphic_amplicon>GTCCAACAAGATGTATCGAAATGTGGGTCCAATCTCCACGTTTTCGTTTGAGAGCTCATACCAGTTTGTCTTGATGGGATACAGTAGTCGACTAAAGAAAAACTTCTGTGAGAGTGCCAGCTCCCKGTAAATGAGATCTTTCAAATATTAATAAAAAGATACCATGCAGGGTTCTTCTACACAACGCTGTGACACATGAAATCGCTAAAAGGTCCAAAAACCCTTCAAAGAAGTTAGCTCAGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17380</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>261351</contig_pos>
        <strand>+</strand>
        <context>TGCCAGCTCC[C/T]KKYAAATGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGGATACAGTAGTCGACTAAAGAAAAACTTCTGTGAGAGTGCCAGCTCC</left_flank>
        <right_flank>GGTAAATGAGATCTTTCAAATATTAATAAAAAGATACCATGCAGGGTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTACCATCTGAGCTCTCAAATGTCCACAAGAACCGGAATGGAACTGATAAGCTTACGGTAAGGAAATAAACTTTGAAAGTCTGAATTCCCTTTTCAGAAATTCCGTTGTGTGCTCTCATCTGTTGCCATCCATTCTGACGTGATCGGTCCTAAAGGAAGGTTTACTATTATAGCCCTTGCAATGACCGTGAATCGAATGTTCACCAATGCAAACGCTAGAGGTGTTTTTGACATCCAAATGACCGCAGCAGCGAATTGGTTCATTCAAGAGGCCAGTACAGAATACTTGTCTTCTTAATGCCACGTAAGAATCCCTTCTCGAATATAGTGAGTTTGGGAATGCGTTGCAGGAATATTTGTATCATCTTGCGGAGTCCAACAAGATGTATCGAAATGTGGGTCCAATCTCCACGTTTTCGTTTGAGAGCTCATACCAGTTTGTCTTGATGGGATACAGTAGTCGACTAAAGAAAAACTTCTGTGAGAGTGCCAGCTCCCGGTAAATGAGATCTTTCAAATATTAATAAAAAGATACCATGCAGGGTTCTTCTACACAACGCTGTGACACATGAAATCGCTAAAAGGTCCAAAAACCCTTCAAAGAAGTTAGCTCAGTTTCTATCACATACCAAAGGGCTTGTTCCTAGAAAGGAAACGATGAGAAATCCGGTGGATTCTCCAAATCAGATCGATGCAGAAGTCCTGAACGGGCAGTCACAATTTTTTTAGGCCTACTTTTATGACTTATTGCAACAAGTCGTAACCGTAGAAATCGATGGTTCGTCAAAAAAAGAACCCGCCGAAAGACAAAAAGTCCCCGGCCGTTTCGGTGAAATCACCTGCGTTAGAAGATTCTGAAGATGTCACGAAAATTTCGTCTAATTTGGAATCCCACGAAAAATCTTTCACCGATTTGAAGCGAATGCGATTTCCATTAATCGTAAGTGATCATTTTGTTATATAGCTATTAACGTGTTTTTTACAGAGAGATGGAGAAA</canonical>
            <polymorphic>TTCTACCATCTGAGCTCTCAAATGTCCACAAGAACCGGAATGGAACTGATAAGCTTACGGTAAGGAAATAAACTTTGAAAGTCTGAATTCCCTTTTCAGAAATTCCGTTGTGTGCTCTCATCTGTTGCCATCCATTCTGACGTGATCGGTCCTAAAGGAAGGTTTACTATTATAGCCCTTGCAATGACCGTGAATCGAATGTTCACCAATGCAAACGCTAGAGGTGTTTTTGACATCCAAATGACCGCAGCAGCGAATTGGTTCATTCAAGAGGCCAGTACAGAATACTTGTCTTCTTAATGCCACGTAAGAATCCCTTCTCGAATATAGTGAGTTTGGGAATGCGTTGCAGGAATATTTGTATCATCTTGCGGAGTCCAACAAGATGTATCGAAATGTGGGTCCAATCTCCACGTTTTCGTTTGAGAGCTCATACCAGTTTGTCTTGATGGGATACAGTAGTCGACTAAAGAAAAACTTCTGTGAGAGTGCCAGCTCCYGGTAAATGAGATCTTTCAAATATTAATAAAAAGATACCATGCAGGGTTCTTCTACACAACGCTGTGACACATGAAATCGCTAAAAGGTCCAAAAACCCTTCAAAGAAGTTAGCTCAGTTTCTATCACATACCAAAGGGCTTGTTCCTAGAAAGGAAACGATGAGAAATCCGGTGGATTCTCCAAATCAGATCGATGCAGAAGTCCTGAACGGGCAGTCACAATTTTTTTAGGCCTACTTTTATGACTTATTGCAACAAGTCGTAACCGTAGAAATCGATGGTTCGTCAAAAAAAGAACCCGCCGAAAGACAAAAAGTCCCCGGCCGTTTCGGTGAAATCACCTGCGTTAGAAGATTCTGAAGATGTCACGAAAATTTCGTCTAATTTGGAATCCCACGAAAAATCTTTCACCGATTTGAAGCGAATGCGATTTCCATTAATCGTAAGTGATCATTTTGTTATATAGCTATTAACGTGTTTTTTACAGAGAGATGGAGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>499 321 180</canonical_bands>
                <polymorphic_bands>820 180</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>464 180 170 151 35</canonical_bands>
                <polymorphic_bands>634 180 151 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCCAACAAGATGTATCGAAAT</pcr_primer_p1>
		<pcr_primer_p2>GAAACTGAGCTAACTTCTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTCCAACAAGATGTATCGAAATGTGGGTCCAATCTCCACGTTTTCGTTTGAGAGCTCATACCAGTTTGTCTTGATGGGATACAGTAGTCGACTAAAGAAAAACTTCTGTGAGAGTGCCAGCTCCCGGTAAATGAGATCTTTCAAATATTAATAAAAAGATACCATGCAGGGTTCTTCTACACAACGCTGTGACACATGAAATCGCTAAAAGGTCCAAAAACCCTTCAAAGAAGTTAGCTCAGTTTC</canonical_amplicon>
		<polymorphic_amplicon>GTCCAACAAGATGTATCGAAATGTGGGTCCAATCTCCACGTTTTCGTTTGAGAGCTCATACCAGTTTGTCTTGATGGGATACAGTAGTCGACTAAAGAAAAACTTCTGTGAGAGTGCCAGCTCCYGGTAAATGAGATCTTTCAAATATTAATAAAAAGATACCATGCAGGGTTCTTCTACACAACGCTGTGACACATGAAATCGCTAAAAGGTCCAAAAACCCTTCAAAGAAGTTAGCTCAGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17381</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>261326</contig_pos>
        <strand>+</strand>
        <context>GACTAAAGAA[A/G]AACTTCTGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGAGCTCATACCAGTTTGTCTTGATGGGATACAGTAGTCGACTAAAGAA</left_flank>
        <right_flank>AACTTCTGTGAGAGTGCCAGCTCCCGGTAAATGAGATCTTTCAAATATTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGAGACAGAAATGACTACAGTAATTCTACCATCTGAGCTCTCAAATGTCCACAAGAACCGGAATGGAACTGATAAGCTTACGGTAAGGAAATAAACTTTGAAAGTCTGAATTCCCTTTTCAGAAATTCCGTTGTGTGCTCTCATCTGTTGCCATCCATTCTGACGTGATCGGTCCTAAAGGAAGGTTTACTATTATAGCCCTTGCAATGACCGTGAATCGAATGTTCACCAATGCAAACGCTAGAGGTGTTTTTGACATCCAAATGACCGCAGCAGCGAATTGGTTCATTCAAGAGGCCAGTACAGAATACTTGTCTTCTTAATGCCACGTAAGAATCCCTTCTCGAATATAGTGAGTTTGGGAATGCGTTGCAGGAATATTTGTATCATCTTGCGGAGTCCAACAAGATGTATCGAAATGTGGGTCCAATCTCCACGTTTTCGTTTGAGAGCTCATACCAGTTTGTCTTGATGGGATACAGTAGTCGACTAAAGAAAAACTTCTGTGAGAGTGCCAGCTCCCGGTAAATGAGATCTTTCAAATATTAATAAAAAGATACCATGCAGGGTTCTTCTACACAACGCTGTGACACATGAAATCGCTAAAAGGTCCAAAAACCCTTCAAAGAAGTTAGCTCAGTTTCTATCACATACCAAAGGGCTTGTTCCTAGAAAGGAAACGATGAGAAATCCGGTGGATTCTCCAAATCAGATCGATGCAGAAGTCCTGAACGGGCAGTCACAATTTTTTTAGGCCTACTTTTATGACTTATTGCAACAAGTCGTAACCGTAGAAATCGATGGTTCGTCAAAAAAAGAACCCGCCGAAAGACAAAAAGTCCCCGGCCGTTTCGGTGAAATCACCTGCGTTAGAAGATTCTGAAGATGTCACGAAAATTTCGTCTAATTTGGAATCCCACGAAAAATCTTTCACCGATTTGAAGCGAATGCGATTTCCATTAATCGTAAGTGATCATTTTGTTATATAGCTATTAACG</canonical>
            <polymorphic>GTTGAGACAGAAATGACTACAGTAATTCTACCATCTGAGCTCTCAAATGTCCACAAGAACCGGAATGGAACTGATAAGCTTACGGTAAGGAAATAAACTTTGAAAGTCTGAATTCCCTTTTCAGAAATTCCGTTGTGTGCTCTCATCTGTTGCCATCCATTCTGACGTGATCGGTCCTAAAGGAAGGTTTACTATTATAGCCCTTGCAATGACCGTGAATCGAATGTTCACCAATGCAAACGCTAGAGGTGTTTTTGACATCCAAATGACCGCAGCAGCGAATTGGTTCATTCAAGAGGCCAGTACAGAATACTTGTCTTCTTAATGCCACGTAAGAATCCCTTCTCGAATATAGTGAGTTTGGGAATGCGTTGCAGGAATATTTGTATCATCTTGCGGAGTCCAACAAGATGTATCGAAATGTGGGTCCAATCTCCACGTTTTCGTTTGAGAGCTCATACCAGTTTGTCTTGATGGGATACAGTAGTCGACTAAAGAARAACTTCTGTGAGAGTGCCAGCTCCCGGTAAATGAGATCTTTCAAATATTAATAAAAAGATACCATGCAGGGTTCTTCTACACAACGCTGTGACACATGAAATCGCTAAAAGGTCCAAAAACCCTTCAAAGAAGTTAGCTCAGTTTCTATCACATACCAAAGGGCTTGTTCCTAGAAAGGAAACGATGAGAAATCCGGTGGATTCTCCAAATCAGATCGATGCAGAAGTCCTGAACGGGCAGTCACAATTTTTTTAGGCCTACTTTTATGACTTATTGCAACAAGTCGTAACCGTAGAAATCGATGGTTCGTCAAAAAAAGAACCCGCCGAAAGACAAAAAGTCCCCGGCCGTTTCGGTGAAATCACCTGCGTTAGAAGATTCTGAAGATGTCACGAAAATTTCGTCTAATTTGGAATCCCACGAAAAATCTTTCACCGATTTGAAGCGAATGCGATTTCCATTAATCGTAAGTGATCATTTTGTTATATAGCTATTAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCCAACAAGATGTATCGAAAT</pcr_primer_p1>
		<pcr_primer_p2>GAAACTGAGCTAACTTCTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTCCAACAAGATGTATCGAAATGTGGGTCCAATCTCCACGTTTTCGTTTGAGAGCTCATACCAGTTTGTCTTGATGGGATACAGTAGTCGACTAAAGAAAAACTTCTGTGAGAGTGCCAGCTCCCGGTAAATGAGATCTTTCAAATATTAATAAAAAGATACCATGCAGGGTTCTTCTACACAACGCTGTGACACATGAAATCGCTAAAAGGTCCAAAAACCCTTCAAAGAAGTTAGCTCAGTTTC</canonical_amplicon>
		<polymorphic_amplicon>GTCCAACAAGATGTATCGAAATGTGGGTCCAATCTCCACGTTTTCGTTTGAGAGCTCATACCAGTTTGTCTTGATGGGATACAGTAGTCGACTAAAGAARAACTTCTGTGAGAGTGCCAGCTCCCGGTAAATGAGATCTTTCAAATATTAATAAAAAGATACCATGCAGGGTTCTTCTACACAACGCTGTGACACATGAAATCGCTAAAAGGTCCAAAAACCCTTCAAAGAAGTTAGCTCAGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17382</snp_id>
        <super_contig>c010101502.Contig1</super_contig>
        <contig_pos>53513</contig_pos>
        <strand>+</strand>
        <context>TCGGATAGTG[A/G]CGTGGCTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTGCTTCACTGCCTGCTCGTAACTAGGTGGTCGACCTTTCGGATAGTG</left_flank>
        <right_flank>CGTGGCTGAAAATCCATATTTTGCTTTTTAATTGAGAATAATAGTTTTAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATACGGACTCATGATAACTGGCGGTGGTCCGACAATGACTGGAAGAGGTGGTGGAGGATAGTATGAAGGTGGAGGAGGACGATATCCGGGAGGTGGTGGTGGACGATGATGTGGCGGAGGCGGTGGACGTCGTTGGGGAGGAGGCGGTGGAGGTGGCTGATTCTTCGAGTGCTCACTACTCTTTTGTTTTGGCTCCGAAATTGATTTTGTGTCTTTTGATGCTGGAGGAGCAGCTGGAGCCGGAGAAGGATTCGGAGCATCTTCATCCTTCTCTTGATTGTCCACTGATTTCTCTACTGACTTTTCCATTGGCTTCTCAACAATCTTCTCTTCTTTCTCCCGGTTCGGATCCTCTTTTTGCTCTTCTTGCCTCATCATCGCTTCCTCTTTTTCTCTATTCTTCTCATTCTGAATTTTCGCTTCCTCTACACTTGATCTTCTAGCTGGTTTCTGCTTCACTGCCTGCTCGTAACTAGGTGGTCGACCTTTCGGATAGTGACGTGGCTGAAAATCCATATTTTGCTTTTTAATTGAGAATAATAGTTTTACCACTGGTTCTCTGCGAGTATTCTGCTGATCTCTAGCTTTTTTCGACTGACAGCATCCCATTTTTTGCGAGATATTTGAGTACTTTTGTTGATCAACTGATTCGAAATAACGATTTGGCGTCAGAGATTTTGAAACTTTGTGGATTCAAGAAGTGGAAACGGCGTGATGCTTCAAGTGTCGTGGTGACATAAATTGAACATGAAAAGAAATTTTCAAGGCTGTGCGAAAATCGGCCGCGGCCGAGGCCTTGAGTATTTTGCCGTGGACCAATCCGACCGTTCTTTTGAAAATAAGGTCAGCTACCCAGGTACTACTAGGGCCGATAGGCCGCCGTACCCTCCCTATCTCAGAAGTATCCTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAGCCTAGGAAATTTTTAACTAGAAAAGAATCGAAATTTTGCATGGAAAAATATTGCCTGGAA</canonical>
            <polymorphic>GATACGGACTCATGATAACTGGCGGTGGTCCGACAATGACTGGAAGAGGTGGTGGAGGATAGTATGAAGGTGGAGGAGGACGATATCCGGGAGGTGGTGGTGGACGATGATGTGGCGGAGGCGGTGGACGTCGTTGGGGAGGAGGCGGTGGAGGTGGCTGATTCTTCGAGTGCTCACTACTCTTTTGTTTTGGCTCCGAAATTGATTTTGTGTCTTTTGATGCTGGAGGAGCAGCTGGAGCCGGAGAAGGATTCGGAGCATCTTCATCCTTCTCTTGATTGTCCACTGATTTCTCTACTGACTTTTCCATTGGCTTCTCAACAATCTTCTCTTCTTTCTCCCGGTTCGGATCCTCTTTTTGCTCTTCTTGCCTCATCATCGCTTCCTCTTTTTCTCTATTCTTCTCATTCTGAATTTTCGCTTCCTCTACACTTGATCTTCTAGCTGGTTTCTGCTTCACTGCCTGCTCGTAACTAGGTGGTCGACCTTTCGGATAGTGRCGTGGCTGAAAATCCATATTTTGCTTTTTAATTGAGAATAATAGTTTTACCACTGGTTCTCTGCGAGTATTCTGCTGATCTCTAGCTTTTTTCGACTGACAGCATCCCATTTTTTGCGAGATATTTGAGTACTTTTGTTGATCAACTGATTCGAAATAACGATTTGGCGTCAGAGATTTTGAAACTTTGTGGATTCAAGAAGTGGAAACGGCGTGATGCTTCAAGTGTCGTGGTGACATAAATTGAACATGAAAAGAAATTTTCAAGGCTGTGCGAAAATCGGCCGCGGCCGAGGCCTTGAGTATTTTGCCGTGGACCAATCCGACCGTTCTTTTGAAAATAAGGTCAGCTACCCAGGTACTACTAGGGCCGATAGGCCGCCGTACCCTCCCTATCTCAGAAGTATCCTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAGCCTAGGAAATTTTTAACTAGAAAAGAATCGAAATTTTGCATGGAAAAATATTGCCTGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>500 372 128</canonical_bands>
                <polymorphic_bands>872 128</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>469 268 236 27</canonical_bands>
                <polymorphic_bands>469 268 263</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>496 268 236</canonical_bands>
                <polymorphic_bands>732 268</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTCTTTTTCTCTATTCTTCTCA</pcr_primer_p1>
		<pcr_primer_p2>AGTACTCAAATATCTCGCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCTCTTTTTCTCTATTCTTCTCATTCTGAATTTTCGCTTCCTCTACACTTGATCTTCTAGCTGGTTTCTGCTTCACTGCCTGCTCGTAACTAGGTGGTCGACCTTTCGGATAGTGACGTGGCTGAAAATCCATATTTTGCTTTTTAATTGAGAATAATAGTTTTACCACTGGTTCTCTGCGAGTATTCTGCTGATCTCTAGCTTTTTTCGACTGACAGCATCCCATTTTTTGCGAGATATTTGAGTACT</canonical_amplicon>
		<polymorphic_amplicon>TCCTCTTTTTCTCTATTCTTCTCATTCTGAATTTTCGCTTCCTCTACACTTGATCTTCTAGCTGGTTTCTGCTTCACTGCCTGCTCGTAACTAGGTGGTCGACCTTTCGGATAGTGRCGTGGCTGAAAATCCATATTTTGCTTTTTAATTGAGAATAATAGTTTTACCACTGGTTCTCTGCGAGTATTCTGCTGATCTCTAGCTTTTTTCGACTGACAGCATCCCATTTTTTGCGAGATATTTGAGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17383</snp_id>
        <super_contig>c010101502.Contig1</super_contig>
        <contig_pos>53552</contig_pos>
        <strand>+</strand>
        <context>TAATTGAGAA[G/T]AATAGTTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCGGATAGTGACGTGGCTGAAAATCCATATTTTGCTTTTTAATTGAGAA</left_flank>
        <right_flank>AATAGTTTTACCACTGGTTCTCTGCGAGTATTCTGCTGATCTCTAGCTTT</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGAAGAGGTGGTGGAGGATAGTATGAAGGTGGAGGAGGACGATATCCGGGAGGTGGTGGTGGACGATGATGTGGCGGAGGCGGTGGACGTCGTTGGGGAGGAGGCGGTGGAGGTGGCTGATTCTTCGAGTGCTCACTACTCTTTTGTTTTGGCTCCGAAATTGATTTTGTGTCTTTTGATGCTGGAGGAGCAGCTGGAGCCGGAGAAGGATTCGGAGCATCTTCATCCTTCTCTTGATTGTCCACTGATTTCTCTACTGACTTTTCCATTGGCTTCTCAACAATCTTCTCTTCTTTCTCCCGGTTCGGATCCTCTTTTTGCTCTTCTTGCCTCATCATCGCTTCCTCTTTTTCTCTATTCTTCTCATTCTGAATTTTCGCTTCCTCTACACTTGATCTTCTAGCTGGTTTCTGCTTCACTGCCTGCTCGTAACTAGGTGGTCGACCTTTCGGATAGTGACGTGGCTGAAAATCCATATTTTGCTTTTTAATTGAGAATAATAGTTTTACCACTGGTTCTCTGCGAGTATTCTGCTGATCTCTAGCTTTTTTCGACTGACAGCATCCCATTTTTTGCGAGATATTTGAGTACTTTTGTTGATCAACTGATTCGAAATAACGATTTGGCGTCAGAGATTTTGAAACTTTGTGGATTCAAGAAGTGGAAACGGCGTGATGCTTCAAGTGTCGTGGTGACATAAATTGAACATGAAAAGAAATTTTCAAGGCTGTGCGAAAATCGGCCGCGGCCGAGGCCTTGAGTATTTTGCCGTGGACCAATCCGACCGTTCTTTTGAAAATAAGGTCAGCTACCCAGGTACTACTAGGGCCGATAGGCCGCCGTACCCTCCCTATCTCAGAAGTATCCTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAGCCTAGGAAATTTTTAACTAGAAAAGAATCGAAATTTTGCATGGAAAAATATTGCCTGGAATCTGAAAGTTTCAAAAAATTACGCACTGAACCAGATTCG</canonical>
            <polymorphic>CTGGAAGAGGTGGTGGAGGATAGTATGAAGGTGGAGGAGGACGATATCCGGGAGGTGGTGGTGGACGATGATGTGGCGGAGGCGGTGGACGTCGTTGGGGAGGAGGCGGTGGAGGTGGCTGATTCTTCGAGTGCTCACTACTCTTTTGTTTTGGCTCCGAAATTGATTTTGTGTCTTTTGATGCTGGAGGAGCAGCTGGAGCCGGAGAAGGATTCGGAGCATCTTCATCCTTCTCTTGATTGTCCACTGATTTCTCTACTGACTTTTCCATTGGCTTCTCAACAATCTTCTCTTCTTTCTCCCGGTTCGGATCCTCTTTTTGCTCTTCTTGCCTCATCATCGCTTCCTCTTTTTCTCTATTCTTCTCATTCTGAATTTTCGCTTCCTCTACACTTGATCTTCTAGCTGGTTTCTGCTTCACTGCCTGCTCGTAACTAGGTGGTCGACCTTTCGGATAGTGACGTGGCTGAAAATCCATATTTTGCTTTTTAATTGAGAAKAATAGTTTTACCACTGGTTCTCTGCGAGTATTCTGCTGATCTCTAGCTTTTTTCGACTGACAGCATCCCATTTTTTGCGAGATATTTGAGTACTTTTGTTGATCAACTGATTCGAAATAACGATTTGGCGTCAGAGATTTTGAAACTTTGTGGATTCAAGAAGTGGAAACGGCGTGATGCTTCAAGTGTCGTGGTGACATAAATTGAACATGAAAAGAAATTTTCAAGGCTGTGCGAAAATCGGCCGCGGCCGAGGCCTTGAGTATTTTGCCGTGGACCAATCCGACCGTTCTTTTGAAAATAAGGTCAGCTACCCAGGTACTACTAGGGCCGATAGGCCGCCGTACCCTCCCTATCTCAGAAGTATCCTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAGCCTAGGAAATTTTTAACTAGAAAAGAATCGAAATTTTGCATGGAAAAATATTGCCTGGAATCTGAAAGTTTCAAAAAATTACGCACTGAACCAGATTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTCTTTTTCTCTATTCTTCTCA</pcr_primer_p1>
		<pcr_primer_p2>AGTACTCAAATATCTCGCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCTCTTTTTCTCTATTCTTCTCATTCTGAATTTTCGCTTCCTCTACACTTGATCTTCTAGCTGGTTTCTGCTTCACTGCCTGCTCGTAACTAGGTGGTCGACCTTTCGGATAGTGACGTGGCTGAAAATCCATATTTTGCTTTTTAATTGAGAATAATAGTTTTACCACTGGTTCTCTGCGAGTATTCTGCTGATCTCTAGCTTTTTTCGACTGACAGCATCCCATTTTTTGCGAGATATTTGAGTACT</canonical_amplicon>
		<polymorphic_amplicon>TCCTCTTTTTCTCTATTCTTCTCATTCTGAATTTTCGCTTCCTCTACACTTGATCTTCTAGCTGGTTTCTGCTTCACTGCCTGCTCGTAACTAGGTGGTCGACCTTTCGGATAGTGACGTGGCTGAAAATCCATATTTTGCTTTTTAATTGAGAAKAATAGTTTTACCACTGGTTCTCTGCGAGTATTCTGCTGATCTCTAGCTTTTTTCGACTGACAGCATCCCATTTTTTGCGAGATATTTGAGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17384</snp_id>
        <super_contig>c010101502.Contig1</super_contig>
        <contig_pos>53597</contig_pos>
        <strand>+</strand>
        <context>GCTGATCTCT[A/G]GCTTTTTTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGAATAATAGTTTTACCACTGGTTCTCTGCGAGTATTCTGCTGATCTCT</left_flank>
        <right_flank>GCTTTTTTCGACTGACAGCATCCCATTTTTTGCGAGATATTTGAGTACTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCGGGAGGTGGTGGTGGACGATGATGTGGCGGAGGCGGTGGACGTCGTTGGGGAGGAGGCGGTGGAGGTGGCTGATTCTTCGAGTGCTCACTACTCTTTTGTTTTGGCTCCGAAATTGATTTTGTGTCTTTTGATGCTGGAGGAGCAGCTGGAGCCGGAGAAGGATTCGGAGCATCTTCATCCTTCTCTTGATTGTCCACTGATTTCTCTACTGACTTTTCCATTGGCTTCTCAACAATCTTCTCTTCTTTCTCCCGGTTCGGATCCTCTTTTTGCTCTTCTTGCCTCATCATCGCTTCCTCTTTTTCTCTATTCTTCTCATTCTGAATTTTCGCTTCCTCTACACTTGATCTTCTAGCTGGTTTCTGCTTCACTGCCTGCTCGTAACTAGGTGGTCGACCTTTCGGATAGTGACGTGGCTGAAAATCCATATTTTGCTTTTTAATTGAGAATAATAGTTTTACCACTGGTTCTCTGCGAGTATTCTGCTGATCTCTAGCTTTTTTCGACTGACAGCATCCCATTTTTTGCGAGATATTTGAGTACTTTTGTTGATCAACTGATTCGAAATAACGATTTGGCGTCAGAGATTTTGAAACTTTGTGGATTCAAGAAGTGGAAACGGCGTGATGCTTCAAGTGTCGTGGTGACATAAATTGAACATGAAAAGAAATTTTCAAGGCTGTGCGAAAATCGGCCGCGGCCGAGGCCTTGAGTATTTTGCCGTGGACCAATCCGACCGTTCTTTTGAAAATAAGGTCAGCTACCCAGGTACTACTAGGGCCGATAGGCCGCCGTACCCTCCCTATCTCAGAAGTATCCTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAGCCTAGGAAATTTTTAACTAGAAAAGAATCGAAATTTTGCATGGAAAAATATTGCCTGGAATCTGAAAGTTTCAAAAAATTACGCACTGAACCAGATTCGGAACATTTTCTGTGGTTTTATATATTTTCAGATCCATTTCCATGA</canonical>
            <polymorphic>ATCCGGGAGGTGGTGGTGGACGATGATGTGGCGGAGGCGGTGGACGTCGTTGGGGAGGAGGCGGTGGAGGTGGCTGATTCTTCGAGTGCTCACTACTCTTTTGTTTTGGCTCCGAAATTGATTTTGTGTCTTTTGATGCTGGAGGAGCAGCTGGAGCCGGAGAAGGATTCGGAGCATCTTCATCCTTCTCTTGATTGTCCACTGATTTCTCTACTGACTTTTCCATTGGCTTCTCAACAATCTTCTCTTCTTTCTCCCGGTTCGGATCCTCTTTTTGCTCTTCTTGCCTCATCATCGCTTCCTCTTTTTCTCTATTCTTCTCATTCTGAATTTTCGCTTCCTCTACACTTGATCTTCTAGCTGGTTTCTGCTTCACTGCCTGCTCGTAACTAGGTGGTCGACCTTTCGGATAGTGACGTGGCTGAAAATCCATATTTTGCTTTTTAATTGAGAATAATAGTTTTACCACTGGTTCTCTGCGAGTATTCTGCTGATCTCTRGCTTTTTTCGACTGACAGCATCCCATTTTTTGCGAGATATTTGAGTACTTTTGTTGATCAACTGATTCGAAATAACGATTTGGCGTCAGAGATTTTGAAACTTTGTGGATTCAAGAAGTGGAAACGGCGTGATGCTTCAAGTGTCGTGGTGACATAAATTGAACATGAAAAGAAATTTTCAAGGCTGTGCGAAAATCGGCCGCGGCCGAGGCCTTGAGTATTTTGCCGTGGACCAATCCGACCGTTCTTTTGAAAATAAGGTCAGCTACCCAGGTACTACTAGGGCCGATAGGCCGCCGTACCCTCCCTATCTCAGAAGTATCCTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAGCCTAGGAAATTTTTAACTAGAAAAGAATCGAAATTTTGCATGGAAAAATATTGCCTGGAATCTGAAAGTTTCAAAAAATTACGCACTGAACCAGATTCGGAACATTTTCTGTGGTTTTATATATTTTCAGATCCATTTCCATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>264 235 210 150 141</canonical_bands>
                <polymorphic_bands>405 235 210 150</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>357 282 127 108 78 33 15</canonical_bands>
                <polymorphic_bands>390 357 127 78 33 15</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>183 144 131 80 73 73 61 54 49 41 36 20 15 14 8 6 6 6</canonical_bands>
                <polymorphic_bands>263 144 131 73 73 61 54 49 41 36 20 15 14 8 6 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATATTTTGCTTTTTAATTGAG</pcr_primer_p1>
		<pcr_primer_p2>TTCTTTTCATGTTCAATTTATGTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CCATATTTTGCTTTTTAATTGAGAATAATAGTTTTACCACTGGTTCTCTGCGAGTATTCTGCTGATCTCTAGCTTTTTTCGACTGACAGCATCCCATTTTTTGCGAGATATTTGAGTACTTTTGTTGATCAACTGATTCGAAATAACGATTTGGCGTCAGAGATTTTGAAACTTTGTGGATTCAAGAAGTGGAAACGGCGTGATGCTTCAAGTGTCGTGGTGACATAAATTGAACATGAAAAGAA</canonical_amplicon>
		<polymorphic_amplicon>CCATATTTTGCTTTTTAATTGAGAATAATAGTTTTACCACTGGTTCTCTGCGAGTATTCTGCTGATCTCTRGCTTTTTTCGACTGACAGCATCCCATTTTTTGCGAGATATTTGAGTACTTTTGTTGATCAACTGATTCGAAATAACGATTTGGCGTCAGAGATTTTGAAACTTTGTGGATTCAAGAAGTGGAAACGGCGTGATGCTTCAAGTGTCGTGGTGACATAAATTGAACATGAAAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17385</snp_id>
        <super_contig>c010101502.Contig1</super_contig>
        <contig_pos>53957</contig_pos>
        <strand></strand>
        <context>GGCACAGCCT[A/T]GGAAATTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCTCAGAAGTATCCTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAGCCT</left_flank>
        <right_flank>GGAAATTTTTAACTAGAAAAGAATCGAAATTTTGCATGGAAAAATATTGC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGGTTTCTGCTTCACTGCCTGCTCGTAACTAGGTGGTCGACCTTTCGGATAGTGACGTGGCTGAAAATCCATATTTTGCTTTTTAATTGAGAATAATAGTTTTACCACTGGTTCTCTGCGAGTATTCTGCTGATCTCTAGCTTTTTTCGACTGACAGCATCCCATTTTTTGCGAGATATTTGAGTACTTTTGTTGATCAACTGATTCGAAATAACGATTTGGCGTCAGAGATTTTGAAACTTTGTGGATTCAAGAAGTGGAAACGGCGTGATGCTTCAAGTGTCGTGGTGACATAAATTGAACATGAAAAGAAATTTTCAAGGCTGTGCGAAAATCGGCCGCGGCCGAGGCCTTGAGTATTTTGCCGTGGACCAATCCGACCGTTCTTTTGAAAATAAGGTCAGCTACCCAGGTACTACTAGGGCCGATAGGCCGCCGTACCCTCCCTATCTCAGAAGTATCCTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAGCCTAGGAAATTTTTAACTAGAAAAGAATCGAAATTTTGCATGGAAAAATATTGCCTGGAATCTGAAAGTTTCAAAAAATTACGCACTGAACCAGATTCGGAACATTTTCTGTGGTTTTATATATTTTCAGATCCATTTCCATGATGACATAAATTTCCAAATTTGAAGTTTCTAGGACATCAAAGTTGTTGGTACGTTTTCTAGTCTATTTGCCATTGTGGACTAGAAAACTCAACTTCCAAAACATAAGCCACCATGTTGAGATCGCCTAGAAAACACATCAGGTGCGTGATAATAAATTTTCGGGCAATCCACTACGATGGCCTAGAAAAATACAGTTGAGAAAGTTAGGCCACTATCCTAGGCAAGACAAAAAAAGTCATCTGAAATTCGATGAAGCTGGGGACACAAATTTCCAAAGTCTTCGTTAAATATTGTAGATAAAAATTTAGGTCAAATTTAGATAATTTTTAAGGAATCAAAAATCTTTAGATTTCATATTTT</canonical>
            <polymorphic>CTGGTTTCTGCTTCACTGCCTGCTCGTAACTAGGTGGTCGACCTTTCGGATAGTGACGTGGCTGAAAATCCATATTTTGCTTTTTAATTGAGAATAATAGTTTTACCACTGGTTCTCTGCGAGTATTCTGCTGATCTCTAGCTTTTTTCGACTGACAGCATCCCATTTTTTGCGAGATATTTGAGTACTTTTGTTGATCAACTGATTCGAAATAACGATTTGGCGTCAGAGATTTTGAAACTTTGTGGATTCAAGAAGTGGAAACGGCGTGATGCTTCAAGTGTCGTGGTGACATAAATTGAACATGAAAAGAAATTTTCAAGGCTGTGCGAAAATCGGCCGCGGCCGAGGCCTTGAGTATTTTGCCGTGGACCAATCCGACCGTTCTTTTGAAAATAAGGTCAGCTACCCAGGTACTACTAGGGCCGATAGGCCGCCGTACCCTCCCTATCTCAGAAGTATCCTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAGCCTWGGAAATTTTTAACTAGAAAAGAATCGAAATTTTGCATGGAAAAATATTGCCTGGAATCTGAAAGTTTCAAAAAATTACGCACTGAACCAGATTCGGAACATTTTCTGTGGTTTTATATATTTTCAGATCCATTTCCATGATGACATAAATTTCCAAATTTGAAGTTTCTAGGACATCAAAGTTGTTGGTACGTTTTCTAGTCTATTTGCCATTGTGGACTAGAAAACTCAACTTCCAAAACATAAGCCACCATGTTGAGATCGCCTAGAAAACACATCAGGTGCGTGATAATAAATTTTCGGGCAATCCACTACGATGGCCTAGAAAAATACAGTTGAGAAAGTTAGGCCACTATCCTAGGCAAGACAAAAAAAGTCATCTGAAATTCGATGAAGCTGGGGACACAAATTTCCAAAGTCTTCGTTAAATATTGTAGATAAAAATTTAGGTCAAATTTAGATAATTTTTAAGGAATCAAAAATCTTTAGATTTCATATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCTAGG</site>
                <isoschizomers>
                    <enzyme>AvrII</enzyme>
                    <enzyme>BlnI</enzyme>
                    <enzyme>BspA2I</enzyme>
                    <enzyme>XmaJI</enzyme>
                </isoschizomers>
                <canonical_bands>497 359 144</canonical_bands>
                <polymorphic_bands>856 144</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>282 155 143 108 78 56 46 36 30 29 22 15</canonical_bands>
                <polymorphic_bands>282 155 143 108 93 56 46 36 30 29 22</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>497 359 144</canonical_bands>
                <polymorphic_bands>856 144</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATAAATTGAACATGAAAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>CAGATTCCAGGCAATATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>ACATAAATTGAACATGAAAAGAAATTTTCAAGGCTGTGCGAAAATCGGCCGCGGCCGAGGCCTTGAGTATTTTGCCGTGGACCAATCCGACCGTTCTTTTGAAAATAAGGTCAGCTACCCAGGTACTACTAGGGCCGATAGGCCGCCGTACCCTCCCTATCTCAGAAGTATCCTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAGCCTAGGAAATTTTTAACTAGAAAAGAATCGAAATTTTGCATGGAAAAATATTGCCTGGAATCTG</canonical_amplicon>
		<polymorphic_amplicon>ACATAAATTGAACATGAAAAGAAATTTTCAAGGCTGTGCGAAAATCGGCCGCGGCCGAGGCCTTGAGTATTTTGCCGTGGACCAATCCGACCGTTCTTTTGAAAATAAGGTCAGCTACCCAGGTACTACTAGGGCCGATAGGCCGCCGTACCCTCCCTATCTCAGAAGTATCCTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAGCCTWGGAAATTTTTAACTAGAAAAGAATCGAAATTTTGCATGGAAAAATATTGCCTGGAATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17386</snp_id>
        <super_contig>c010101502.Contig1</super_contig>
        <contig_pos>53979</contig_pos>
        <strand>+</strand>
        <context>ACTAGAAAAG[A/T]ATCGAAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGTGCTGCGGCCGTTCTGGCACAGCCTAGGAAATTTTTAACTAGAAAAG</left_flank>
        <right_flank>ATCGAAATTTTGCATGGAAAAATATTGCCTGGAATCTGAAAGTTTCAAAA</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCGTAACTAGGTGGTCGACCTTTCGGATAGTGACGTGGCTGAAAATCCATATTTTGCTTTTTAATTGAGAATAATAGTTTTACCACTGGTTCTCTGCGAGTATTCTGCTGATCTCTAGCTTTTTTCGACTGACAGCATCCCATTTTTTGCGAGATATTTGAGTACTTTTGTTGATCAACTGATTCGAAATAACGATTTGGCGTCAGAGATTTTGAAACTTTGTGGATTCAAGAAGTGGAAACGGCGTGATGCTTCAAGTGTCGTGGTGACATAAATTGAACATGAAAAGAAATTTTCAAGGCTGTGCGAAAATCGGCCGCGGCCGAGGCCTTGAGTATTTTGCCGTGGACCAATCCGACCGTTCTTTTGAAAATAAGGTCAGCTACCCAGGTACTACTAGGGCCGATAGGCCGCCGTACCCTCCCTATCTCAGAAGTATCCTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAGCCTAGGAAATTTTTAACTAGAAAAGAATCGAAATTTTGCATGGAAAAATATTGCCTGGAATCTGAAAGTTTCAAAAAATTACGCACTGAACCAGATTCGGAACATTTTCTGTGGTTTTATATATTTTCAGATCCATTTCCATGATGACATAAATTTCCAAATTTGAAGTTTCTAGGACATCAAAGTTGTTGGTACGTTTTCTAGTCTATTTGCCATTGTGGACTAGAAAACTCAACTTCCAAAACATAAGCCACCATGTTGAGATCGCCTAGAAAACACATCAGGTGCGTGATAATAAATTTTCGGGCAATCCACTACGATGGCCTAGAAAAATACAGTTGAGAAAGTTAGGCCACTATCCTAGGCAAGACAAAAAAAGTCATCTGAAATTCGATGAAGCTGGGGACACAAATTTCCAAAGTCTTCGTTAAATATTGTAGATAAAAATTTAGGTCAAATTTAGATAATTTTTAAGGAATCAAAAATCTTTAGATTTCATATTTTTTCAAAGCTTTCATAGCTCTCG</canonical>
            <polymorphic>CTCGTAACTAGGTGGTCGACCTTTCGGATAGTGACGTGGCTGAAAATCCATATTTTGCTTTTTAATTGAGAATAATAGTTTTACCACTGGTTCTCTGCGAGTATTCTGCTGATCTCTAGCTTTTTTCGACTGACAGCATCCCATTTTTTGCGAGATATTTGAGTACTTTTGTTGATCAACTGATTCGAAATAACGATTTGGCGTCAGAGATTTTGAAACTTTGTGGATTCAAGAAGTGGAAACGGCGTGATGCTTCAAGTGTCGTGGTGACATAAATTGAACATGAAAAGAAATTTTCAAGGCTGTGCGAAAATCGGCCGCGGCCGAGGCCTTGAGTATTTTGCCGTGGACCAATCCGACCGTTCTTTTGAAAATAAGGTCAGCTACCCAGGTACTACTAGGGCCGATAGGCCGCCGTACCCTCCCTATCTCAGAAGTATCCTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAGCCTAGGAAATTTTTAACTAGAAAAGWATCGAAATTTTGCATGGAAAAATATTGCCTGGAATCTGAAAGTTTCAAAAAATTACGCACTGAACCAGATTCGGAACATTTTCTGTGGTTTTATATATTTTCAGATCCATTTCCATGATGACATAAATTTCCAAATTTGAAGTTTCTAGGACATCAAAGTTGTTGGTACGTTTTCTAGTCTATTTGCCATTGTGGACTAGAAAACTCAACTTCCAAAACATAAGCCACCATGTTGAGATCGCCTAGAAAACACATCAGGTGCGTGATAATAAATTTTCGGGCAATCCACTACGATGGCCTAGAAAAATACAGTTGAGAAAGTTAGGCCACTATCCTAGGCAAGACAAAAAAAGTCATCTGAAATTCGATGAAGCTGGGGACACAAATTTCCAAAGTCTTCGTTAAATATTGTAGATAAAAATTTAGGTCAAATTTAGATAATTTTTAAGGAATCAAAAATCTTTAGATTTCATATTTTTTCAAAGCTTTCATAGCTCTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>382 273 182 50 44 36 33</canonical_bands>
                <polymorphic_bands>382 306 182 50 44 36</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>382 273 182 50 44 36 33</canonical_bands>
                <polymorphic_bands>382 306 182 50 44 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATAAATTGAACATGAAAAGAAAT</pcr_primer_p1>
		<pcr_primer_p2>AATCTGGTTCAGTGCGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>CATAAATTGAACATGAAAAGAAATTTTCAAGGCTGTGCGAAAATCGGCCGCGGCCGAGGCCTTGAGTATTTTGCCGTGGACCAATCCGACCGTTCTTTTGAAAATAAGGTCAGCTACCCAGGTACTACTAGGGCCGATAGGCCGCCGTACCCTCCCTATCTCAGAAGTATCCTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAGCCTAGGAAATTTTTAACTAGAAAAGAATCGAAATTTTGCATGGAAAAATATTGCCTGGAATCTGAAAGTTTCAAAAAATTACGCACTGAACCAGATT</canonical_amplicon>
		<polymorphic_amplicon>CATAAATTGAACATGAAAAGAAATTTTCAAGGCTGTGCGAAAATCGGCCGCGGCCGAGGCCTTGAGTATTTTGCCGTGGACCAATCCGACCGTTCTTTTGAAAATAAGGTCAGCTACCCAGGTACTACTAGGGCCGATAGGCCGCCGTACCCTCCCTATCTCAGAAGTATCCTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAGCCTAGGAAATTTTTAACTAGAAAAGWATCGAAATTTTGCATGGAAAAATATTGCCTGGAATCTGAAAGTTTCAAAAAATTACGCACTGAACCAGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17387</snp_id>
        <super_contig>c010101502.Contig1</super_contig>
        <contig_pos>59380</contig_pos>
        <strand>+</strand>
        <context>TCGTGTTGAA[A/G]CTCTGATGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAATAGCCACGTTTTTCTCGTTTCACTTCATCATTACTATCGTGTTGAA</left_flank>
        <right_flank>CTCTGATGCATCATTATCGAGATCGTTGGGGCCAGAGTGTGAAGTTACGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACCTGAAAAATTTAGAAATTTTAGGATTCTGAGGTTCTGAGATTTGGAGATTTTCGAGATCATGAGATTCTGAGATTCCGAAACTCTCCATTTCTGAATTCCGAAACTCTAAGATTCTGAGATTCTGAAATTCGAAGATTCTGAGATTCTAACATTTTTCAACTATTCCTCAGAGATTCAAAAAACTCCTCAGAATGTCATTCGCCAATGAGAAACTTGGTATGACTCAACCTATTCTCAGAAAGTTCAACATCTATGAATCATCAATTTCTGATTCATCCAGAATCTTTCGAAACATTCTAGTAATCTCACTCAGCTGAATCAGTAACACCAACTCACCATTCGCCGATACCGATTGTGCTCGTGAACAATCCATTTCTTAAGATACTCGTTCGGATGCTCCGATCGAGCCAGAAGACCACCGTCATTTTGGAAGTTTGAAGGGAAGAAATAGCCACGTTTTTCTCGTTTCACTTCATCATTACTATCGTGTTGAAACTCTGATGCATCATTATCGAGATCGTTGGGGCCAGAGTGTGAAGTTACGGCTTGACCTGTAATTTTAAGCAATTTTCAAATGATCCGAATGTCTATTAGAACTCAGAAAAAGTGAACGGAGTATAATAGGTTTTTCTGAGAATTGTCCTAAACTACAGTATCCTAAATCTTGCATGCCGTGGGATTCCTAGTTATCCAAAGAGACTACCGTACTTCTCTAACAGAAGCCTACCCAAAACCGTCAACTTTGAGCTCAATTATCTCGATTCCTGTGAAAGATATCAAGAACTTGTCAACTGATAAAATGTTTTGATTATTATGATAAACAATTTATTAGTTGACAACTTTTCAATATCTCTGATAAGAACTGAGATAATTGAGCTCAAGTTGACGGGTTGGGTGGGCTTCTAATAGAGGGAATACGGTAGGCTTTGCTCCCACCACATGAACTACAGTAACCTGAATCTTGAATTCCATGAGAAAAAGAGAATAGTATTATT</canonical>
            <polymorphic>GTACCTGAAAAATTTAGAAATTTTAGGATTCTGAGGTTCTGAGATTTGGAGATTTTCGAGATCATGAGATTCTGAGATTCCGAAACTCTCCATTTCTGAATTCCGAAACTCTAAGATTCTGAGATTCTGAAATTCGAAGATTCTGAGATTCTAACATTTTTCAACTATTCCTCAGAGATTCAAAAAACTCCTCAGAATGTCATTCGCCAATGAGAAACTTGGTATGACTCAACCTATTCTCAGAAAGTTCAACATCTATGAATCATCAATTTCTGATTCATCCAGAATCTTTCGAAACATTCTAGTAATCTCACTCAGCTGAATCAGTAACACCAACTCACCATTCGCCGATACCGATTGTGCTCGTGAACAATCCATTTCTTAAGATACTCGTTCGGATGCTCCGATCGAGCCAGAAGACCACCGTCATTTTGGAAGTTTGAAGGGAAGAAATAGCCACGTTTTTCTCGTTTCACTTCATCATTACTATCGTGTTGAARCTCTGATGCATCATTATCGAGATCGTTGGGGCCAGAGTGTGAAGTTACGGCTTGACCTGTAATTTTAAGCAATTTTCAAATGATCCGAATGTCTATTAGAACTCAGAAAAAGTGAACGGAGTATAATAGGTTTTTCTGAGAATTGTCCTAAACTACAGTATCCTAAATCTTGCATGCCGTGGGATTCCTAGTTATCCAAAGAGACTACCGTACTTCTCTAACAGAAGCCTACCCAAAACCGTCAACTTTGAGCTCAATTATCTCGATTCCTGTGAAAGATATCAAGAACTTGTCAACTGATAAAATGTTTTGATTATTATGATAAACAATTTATTAGTTGACAACTTTTCAATATCTCTGATAAGAACTGAGATAATTGAGCTCAAGTTGACGGGTTGGGTGGGCTTCTAATAGAGGGAATACGGTAGGCTTTGCTCCCACCACATGAACTACAGTAACCTGAATCTTGAATTCCATGAGAAAAAGAGAATAGTATTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGTAACACCAACTCACCAT</pcr_primer_p1>
		<pcr_primer_p2>ATTGCTTAAAATTACAGGTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAGTAACACCAACTCACCATTCGCCGATACCGATTGTGCTCGTGAACAATCCATTTCTTAAGATACTCGTTCGGATGCTCCGATCGAGCCAGAAGACCACCGTCATTTTGGAAGTTTGAAGGGAAGAAATAGCCACGTTTTTCTCGTTTCACTTCATCATTACTATCGTGTTGAAACTCTGATGCATCATTATCGAGATCGTTGGGGCCAGAGTGTGAAGTTACGGCTTGACCTGTAATTTTAAGCAAT</canonical_amplicon>
		<polymorphic_amplicon>TCAGTAACACCAACTCACCATTCGCCGATACCGATTGTGCTCGTGAACAATCCATTTCTTAAGATACTCGTTCGGATGCTCCGATCGAGCCAGAAGACCACCGTCATTTTGGAAGTTTGAAGGGAAGAAATAGCCACGTTTTTCTCGTTTCACTTCATCATTACTATCGTGTTGAARCTCTGATGCATCATTATCGAGATCGTTGGGGCCAGAGTGTGAAGTTACGGCTTGACCTGTAATTTTAAGCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17388</snp_id>
        <super_contig>c010101502.Contig1</super_contig>
        <contig_pos>59354</contig_pos>
        <strand>+</strand>
        <context>TTTCTCGTTT[A/C]ACTTCATCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCGTCATTTTGGAAGTTTGAAGGGAAGAAATAGCCACGTTTTTCTCGTTT</left_flank>
        <right_flank>ACTTCATCATTACTATCGTGTTGAAACTCTGATGCATCATTATCGAGATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGAGCATGTTCATATCAGATGCTGGTACCTGAAAAATTTAGAAATTTTAGGATTCTGAGGTTCTGAGATTTGGAGATTTTCGAGATCATGAGATTCTGAGATTCCGAAACTCTCCATTTCTGAATTCCGAAACTCTAAGATTCTGAGATTCTGAAATTCGAAGATTCTGAGATTCTAACATTTTTCAACTATTCCTCAGAGATTCAAAAAACTCCTCAGAATGTCATTCGCCAATGAGAAACTTGGTATGACTCAACCTATTCTCAGAAAGTTCAACATCTATGAATCATCAATTTCTGATTCATCCAGAATCTTTCGAAACATTCTAGTAATCTCACTCAGCTGAATCAGTAACACCAACTCACCATTCGCCGATACCGATTGTGCTCGTGAACAATCCATTTCTTAAGATACTCGTTCGGATGCTCCGATCGAGCCAGAAGACCACCGTCATTTTGGAAGTTTGAAGGGAAGAAATAGCCACGTTTTTCTCGTTTCACTTCATCATTACTATCGTGTTGAAACTCTGATGCATCATTATCGAGATCGTTGGGGCCAGAGTGTGAAGTTACGGCTTGACCTGTAATTTTAAGCAATTTTCAAATGATCCGAATGTCTATTAGAACTCAGAAAAAGTGAACGGAGTATAATAGGTTTTTCTGAGAATTGTCCTAAACTACAGTATCCTAAATCTTGCATGCCGTGGGATTCCTAGTTATCCAAAGAGACTACCGTACTTCTCTAACAGAAGCCTACCCAAAACCGTCAACTTTGAGCTCAATTATCTCGATTCCTGTGAAAGATATCAAGAACTTGTCAACTGATAAAATGTTTTGATTATTATGATAAACAATTTATTAGTTGACAACTTTTCAATATCTCTGATAAGAACTGAGATAATTGAGCTCAAGTTGACGGGTTGGGTGGGCTTCTAATAGAGGGAATACGGTAGGCTTTGCTCCCACCACATGAACTACAGTAACCTGAATCTTGAATTC</canonical>
            <polymorphic>ATAGAGCATGTTCATATCAGATGCTGGTACCTGAAAAATTTAGAAATTTTAGGATTCTGAGGTTCTGAGATTTGGAGATTTTCGAGATCATGAGATTCTGAGATTCCGAAACTCTCCATTTCTGAATTCCGAAACTCTAAGATTCTGAGATTCTGAAATTCGAAGATTCTGAGATTCTAACATTTTTCAACTATTCCTCAGAGATTCAAAAAACTCCTCAGAATGTCATTCGCCAATGAGAAACTTGGTATGACTCAACCTATTCTCAGAAAGTTCAACATCTATGAATCATCAATTTCTGATTCATCCAGAATCTTTCGAAACATTCTAGTAATCTCACTCAGCTGAATCAGTAACACCAACTCACCATTCGCCGATACCGATTGTGCTCGTGAACAATCCATTTCTTAAGATACTCGTTCGGATGCTCCGATCGAGCCAGAAGACCACCGTCATTTTGGAAGTTTGAAGGGAAGAAATAGCCACGTTTTTCTCGTTTMACTTCATCATTACTATCGTGTTGAAACTCTGATGCATCATTATCGAGATCGTTGGGGCCAGAGTGTGAAGTTACGGCTTGACCTGTAATTTTAAGCAATTTTCAAATGATCCGAATGTCTATTAGAACTCAGAAAAAGTGAACGGAGTATAATAGGTTTTTCTGAGAATTGTCCTAAACTACAGTATCCTAAATCTTGCATGCCGTGGGATTCCTAGTTATCCAAAGAGACTACCGTACTTCTCTAACAGAAGCCTACCCAAAACCGTCAACTTTGAGCTCAATTATCTCGATTCCTGTGAAAGATATCAAGAACTTGTCAACTGATAAAATGTTTTGATTATTATGATAAACAATTTATTAGTTGACAACTTTTCAATATCTCTGATAAGAACTGAGATAATTGAGCTCAAGTTGACGGGTTGGGTGGGCTTCTAATAGAGGGAATACGGTAGGCTTTGCTCCCACCACATGAACTACAGTAACCTGAATCTTGAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>339 128 93 73 67 55 45 38 36 31 22 19 19 16 8 6 3 2</canonical_bands>
                <polymorphic_bands>339 128 93 73 67 55 45 38 36 35 31 22 19 8 6 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAGTAACACCAACTCACCAT</pcr_primer_p1>
		<pcr_primer_p2>ATTGCTTAAAATTACAGGTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAGTAACACCAACTCACCATTCGCCGATACCGATTGTGCTCGTGAACAATCCATTTCTTAAGATACTCGTTCGGATGCTCCGATCGAGCCAGAAGACCACCGTCATTTTGGAAGTTTGAAGGGAAGAAATAGCCACGTTTTTCTCGTTTCACTTCATCATTACTATCGTGTTGAAACTCTGATGCATCATTATCGAGATCGTTGGGGCCAGAGTGTGAAGTTACGGCTTGACCTGTAATTTTAAGCAAT</canonical_amplicon>
		<polymorphic_amplicon>TCAGTAACACCAACTCACCATTCGCCGATACCGATTGTGCTCGTGAACAATCCATTTCTTAAGATACTCGTTCGGATGCTCCGATCGAGCCAGAAGACCACCGTCATTTTGGAAGTTTGAAGGGAAGAAATAGCCACGTTTTTCTCGTTTMACTTCATCATTACTATCGTGTTGAAACTCTGATGCATCATTATCGAGATCGTTGGGGCCAGAGTGTGAAGTTACGGCTTGACCTGTAATTTTAAGCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17389</snp_id>
        <super_contig>c010101502.Contig1</super_contig>
        <contig_pos>59131</contig_pos>
        <strand>+</strand>
        <context>CAGAAAGTTC[A/G]ACATCTATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTCGCCAATGAGAAACTTGGTATGACTCAACCTATTCTCAGAAAGTTC</left_flank>
        <right_flank>ACATCTATGAATCATCAATTTCTGATTCATCCAGAATCTTTCGAAACATT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCATCCACATCTTGGATTGTGGACCTGTAATAGAAATAGAGAGATTGTTGGTAATTATGAGAATGTTGACTAACCTCGTTAAACCAGATTGAGATGGAGTCCGAGTAATTGCTGTAAGGTGCCGCCCAGATGTTCTCCCCGACGTTGATACGTCCACGTGAGTGACGGAAGTCACAAGTGTCGGCGTGACGTTGGGCAGATGCTGCCAACTCCTCGGACCAATAGAGCATGTTCATATCAGATGCTGGTACCTGAAAAATTTAGAAATTTTAGGATTCTGAGGTTCTGAGATTTGGAGATTTTCGAGATCATGAGATTCTGAGATTCCGAAACTCTCCATTTCTGAATTCCGAAACTCTAAGATTCTGAGATTCTGAAATTCGAAGATTCTGAGATTCTAACATTTTTCAACTATTCCTCAGAGATTCAAAAAACTCCTCAGAATGTCATTCGCCAATGAGAAACTTGGTATGACTCAACCTATTCTCAGAAAGTTCAACATCTATGAATCATCAATTTCTGATTCATCCAGAATCTTTCGAAACATTCTAGTAATCTCACTCAGCTGAATCAGTAACACCAACTCACCATTCGCCGATACCGATTGTGCTCGTGAACAATCCATTTCTTAAGATACTCGTTCGGATGCTCCGATCGAGCCAGAAGACCACCGTCATTTTGGAAGTTTGAAGGGAAGAAATAGCCACGTTTTTCTCGTTTCACTTCATCATTACTATCGTGTTGAAACTCTGATGCATCATTATCGAGATCGTTGGGGCCAGAGTGTGAAGTTACGGCTTGACCTGTAATTTTAAGCAATTTTCAAATGATCCGAATGTCTATTAGAACTCAGAAAAAGTGAACGGAGTATAATAGGTTTTTCTGAGAATTGTCCTAAACTACAGTATCCTAAATCTTGCATGCCGTGGGATTCCTAGTTATCCAAAGAGACTACCGTACTTCTCTAACAGAAGCCTACCCAAAACCGTCAACTTTGA</canonical>
            <polymorphic>TTGCATCCACATCTTGGATTGTGGACCTGTAATAGAAATAGAGAGATTGTTGGTAATTATGAGAATGTTGACTAACCTCGTTAAACCAGATTGAGATGGAGTCCGAGTAATTGCTGTAAGGTGCCGCCCAGATGTTCTCCCCGACGTTGATACGTCCACGTGAGTGACGGAAGTCACAAGTGTCGGCGTGACGTTGGGCAGATGCTGCCAACTCCTCGGACCAATAGAGCATGTTCATATCAGATGCTGGTACCTGAAAAATTTAGAAATTTTAGGATTCTGAGGTTCTGAGATTTGGAGATTTTCGAGATCATGAGATTCTGAGATTCCGAAACTCTCCATTTCTGAATTCCGAAACTCTAAGATTCTGAGATTCTGAAATTCGAAGATTCTGAGATTCTAACATTTTTCAACTATTCCTCAGAGATTCAAAAAACTCCTCAGAATGTCATTCGCCAATGAGAAACTTGGTATGACTCAACCTATTCTCAGAAAGTTCRACATCTATGAATCATCAATTTCTGATTCATCCAGAATCTTTCGAAACATTCTAGTAATCTCACTCAGCTGAATCAGTAACACCAACTCACCATTCGCCGATACCGATTGTGCTCGTGAACAATCCATTTCTTAAGATACTCGTTCGGATGCTCCGATCGAGCCAGAAGACCACCGTCATTTTGGAAGTTTGAAGGGAAGAAATAGCCACGTTTTTCTCGTTTCACTTCATCATTACTATCGTGTTGAAACTCTGATGCATCATTATCGAGATCGTTGGGGCCAGAGTGTGAAGTTACGGCTTGACCTGTAATTTTAAGCAATTTTCAAATGATCCGAATGTCTATTAGAACTCAGAAAAAGTGAACGGAGTATAATAGGTTTTTCTGAGAATTGTCCTAAACTACAGTATCCTAAATCTTGCATGCCGTGGGATTCCTAGTTATCCAAAGAGACTACCGTACTTCTCTAACAGAAGCCTACCCAAAACCGTCAACTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGAGATTCTAACATTTTTCAAC</pcr_primer_p1>
		<pcr_primer_p2>CGAGTATCTTAAGAAATGGATTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCTGAGATTCTAACATTTTTCAACTATTCCTCAGAGATTCAAAAAACTCCTCAGAATGTCATTCGCCAATGAGAAACTTGGTATGACTCAACCTATTCTCAGAAAGTTCAACATCTATGAATCATCAATTTCTGATTCATCCAGAATCTTTCGAAACATTCTAGTAATCTCACTCAGCTGAATCAGTAACACCAACTCACCATTCGCCGATACCGATTGTGCTCGTGAACAATCCATTTCTTAAGATACTCG</canonical_amplicon>
		<polymorphic_amplicon>TCTGAGATTCTAACATTTTTCAACTATTCCTCAGAGATTCAAAAAACTCCTCAGAATGTCATTCGCCAATGAGAAACTTGGTATGACTCAACCTATTCTCAGAAAGTTCRACATCTATGAATCATCAATTTCTGATTCATCCAGAATCTTTCGAAACATTCTAGTAATCTCACTCAGCTGAATCAGTAACACCAACTCACCATTCGCCGATACCGATTGTGCTCGTGAACAATCCATTTCTTAAGATACTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17390</snp_id>
        <super_contig>c010101502.Contig1</super_contig>
        <contig_pos>139730</contig_pos>
        <strand>+</strand>
        <context>CATCTGAAAA[A/T]TTTTCCATAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGAGAAACCGTAATAAGTAACAATGTTTGGATGGGATACCATCTGAAAA</left_flank>
        <right_flank>TTTTCCATAATTCGAAAATTCGAAAACTTTCGAAACCTCCAAAATCTCCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGAGTAACCTTCAATAGAAGGTGGAATCTGTTAACTACTTAATAACTATGTTTTTTTTCTACAATAGCGCAAATATTTTGAACGTTACTGTCATTGATATTTTTCAGATCAGTTGAAACAGTAATGACCTTATTTCGTTTTAACAGGACCCAAAATTGACAAAATAAGGCCAAAATTTAATCTGCTAGTGTGCCTTACTTTTTGGTATAAACCGGATGTTTCTTGATAAGAACATTTCTTGCCGCAAGATCTCCATGAACCACTGGCGGTGTTCGAGTGTGCAAAAAACTCATGCCTCTACAGATTTGAGCCAAAATATCCAGTCGTTCGTTTTCCGAGAGCATCGCATCAGTCTTTTCAATGAATTTATCCAACGAGGCATCCATCAATTCAAAAATCAAAAAGAGTTGGATTCCACCGGAAACTCCATTCATTCCACTACACATCATTGAGAAACCGTAATAAGTAACAATGTTTGGATGGGATACCATCTGAAAATTTTTCCATAATTCGAAAATTCGAAAACTTTCGAAACCTCCAAAATCTCCATTTCTGTAAATGCAGGATTTCTCTCATCCTTCTCATTCTCTCTCAACTGCAATTTTTTCACTGCTACCGGAACTTTTTCGCCCGAGTTTCGAATCAATTTTCCTTTATTCACTTGCCCAAATGCTCCTTTTCCAAGAGAATCTCTCGCGGATTCCTATAAAAAAGTGAATTTAGGAGATTGGACTGCAGAATTCAAAAAAAAAAGAGGGACGACTCACTATCTGCTTCAAGTCGATATAAAACGGAGAGTTGATTCGAATTGAGGTCTCGTGAGGTGGATATTTCTTCTTTGCAGCACTGACTTTGTCTTCTGATGGAGATCTTGGTATGTCAAGTTTTGCGAGATAAGAAGCCATGATATCCTTTTCAGATTCTCGAAGACTCAGCTGTCCTTCTATTACCTTATGACTCGGTTTTCCAACATCGAAGAGAGTTTTTGTGGCAAAAAGT</canonical>
            <polymorphic>GGGAGTAACCTTCAATAGAAGGTGGAATCTGTTAACTACTTAATAACTATGTTTTTTTTCTACAATAGCGCAAATATTTTGAACGTTACTGTCATTGATATTTTTCAGATCAGTTGAAACAGTAATGACCTTATTTCGTTTTAACAGGACCCAAAATTGACAAAATAAGGCCAAAATTTAATCTGCTAGTGTGCCTTACTTTTTGGTATAAACCGGATGTTTCTTGATAAGAACATTTCTTGCCGCAAGATCTCCATGAACCACTGGCGGTGTTCGAGTGTGCAAAAAACTCATGCCTCTACAGATTTGAGCCAAAATATCCAGTCGTTCGTTTTCCGAGAGCATCGCATCAGTCTTTTCAATGAATTTATCCAACGAGGCATCCATCAATTCAAAAATCAAAAAGAGTTGGATTCCACCGGAAACTCCATTCATTCCACTACACATCATTGAGAAACCGTAATAAGTAACAATGTTTGGATGGGATACCATCTGAAAAWTTTTCCATAATTCGAAAATTCGAAAACTTTCGAAACCTCCAAAATCTCCATTTCTGTAAATGCAGGATTTCTCTCATCCTTCTCATTCTCTCTCAACTGCAATTTTTTCACTGCTACCGGAACTTTTTCGCCCGAGTTTCGAATCAATTTTCCTTTATTCACTTGCCCAAATGCTCCTTTTCCAAGAGAATCTCTCGCGGATTCCTATAAAAAAGTGAATTTAGGAGATTGGACTGCAGAATTCAAAAAAAAAAGAGGGACGACTCACTATCTGCTTCAAGTCGATATAAAACGGAGAGTTGATTCGAATTGAGGTCTCGTGAGGTGGATATTTCTTCTTTGCAGCACTGACTTTGTCTTCTGATGGAGATCTTGGTATGTCAAGTTTTGCGAGATAAGAAGCCATGATATCCTTTTCAGATTCTCGAAGACTCAGCTGTCCTTCTATTACCTTATGACTCGGTTTTCCAACATCGAAGAGAGTTTTTGTGGCAAAAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>261 201 190 174 133 22 19</canonical_bands>
                <polymorphic_bands>261 201 190 174 152 22</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>193 190 154 109 84 72 68 45 24 22 20 11 8</canonical_bands>
                <polymorphic_bands>193 190 154 120 84 72 68 45 24 22 20 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTCTTTTCAATGAATTTATCC</pcr_primer_p1>
		<pcr_primer_p2>GCAGTTGAGAGAGAATGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGTCTTTTCAATGAATTTATCCAACGAGGCATCCATCAATTCAAAAATCAAAAAGAGTTGGATTCCACCGGAAACTCCATTCATTCCACTACACATCATTGAGAAACCGTAATAAGTAACAATGTTTGGATGGGATACCATCTGAAAATTTTTCCATAATTCGAAAATTCGAAAACTTTCGAAACCTCCAAAATCTCCATTTCTGTAAATGCAGGATTTCTCTCATCCTTCTCATTCTCTCTCAACTGC</canonical_amplicon>
		<polymorphic_amplicon>CAGTCTTTTCAATGAATTTATCCAACGAGGCATCCATCAATTCAAAAATCAAAAAGAGTTGGATTCCACCGGAAACTCCATTCATTCCACTACACATCATTGAGAAACCGTAATAAGTAACAATGTTTGGATGGGATACCATCTGAAAAWTTTTCCATAATTCGAAAATTCGAAAACTTTCGAAACCTCCAAAATCTCCATTTCTGTAAATGCAGGATTTCTCTCATCCTTCTCATTCTCTCTCAACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17414</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>68207</contig_pos>
        <strand>+</strand>
        <context>CCCAAGCGGA[C/T]ATGTTCTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGATGATTCAGGAGTCCGGGAAACGTGGAAAAGCTGGAACCCAAGCGGA</left_flank>
        <right_flank>ATGTTCTTTGTGCCTTACAACGTCGCGAATATTCAAGAATTCAACCCGAT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTATTCGGTGCTCTCGGACCCCAATAAGCGAAGACAGTACGATGTGAGTGGTCCGTCAGAGAATCAGCTGGATTTTGAGGGTTTTGATGTGTCGGAAATGGGTGGAGTTGGTGAGTAAAGTCTTCTTTGTGTTGTTTGAATCAAAACTTTGAATTTTTTAGGCCGCGTTTTCGGAGCCCTCTTCAGCAAACTCGGAGTCCCAATTCCCACTCAAATCGTCCCCAAAGTCCTCGCTCAAGCTCGCCAAATCTGTCTGGGGCAGGAAAGTGACATCCACGCAAGGCCGCTGGCCCCAGGAGACACTGTTACAGCTTCTGTGAGCAAGCAACATGCGCATTTCTATGAGATCAATATGCTGGAGGACTTTAGAAAGAATGGAGTGGCGATCATCTGCAAAAGCTCGTCGTCCAAATTCAAGCTAGTGCTTTTCGATAAGGAAGGAGGTGTGCGGATGATTCAGGAGTCCGGGAAACGTGGAAAAGCTGGAACCCAAGCGGATATGTTCTTTGTGCCTTACAACGTCGCGAATATTCAAGAATTCAACCCGATGAAGTATCATTTGGAAGACAAGGATACGCCGATAGCTTTCCACTATTTGGATTCGTTTGAAATGCAAACGGCGACACTTTTGGAGACCCGAAAACACTATATTGCTGTATATGGTGACAATTGGATAAGCGATGTGAAGTACTCTATAACCTTCTTACCGGTGGCGGCAGCTGCTAACGAGCAGCTTGTGGAGATTCAGGACACCGAAAAGGCGATATCCGTGATAAAAAAGGAAATGCTAGACTTCCAGAGAGAATTCACAGAAGCTAAGCGCAAATACGATGAGGCGGTTGCTAAGCTCAAAGTGCAGGACGACGTTATCCTGAAGGCCTTGTCGACCCGTGAGGATCTCTACAACGACGTCGTCAGGCAGTCTCAGGAGCCGTATAACAAGAAAGTGTCGCCGTCGAAATCGTCCGGCGGATTTTTGGGCGGATGGTTTAAATAATT</canonical>
            <polymorphic>CCTATTCGGTGCTCTCGGACCCCAATAAGCGAAGACAGTACGATGTGAGTGGTCCGTCAGAGAATCAGCTGGATTTTGAGGGTTTTGATGTGTCGGAAATGGGTGGAGTTGGTGAGTAAAGTCTTCTTTGTGTTGTTTGAATCAAAACTTTGAATTTTTTAGGCCGCGTTTTCGGAGCCCTCTTCAGCAAACTCGGAGTCCCAATTCCCACTCAAATCGTCCCCAAAGTCCTCGCTCAAGCTCGCCAAATCTGTCTGGGGCAGGAAAGTGACATCCACGCAAGGCCGCTGGCCCCAGGAGACACTGTTACAGCTTCTGTGAGCAAGCAACATGCGCATTTCTATGAGATCAATATGCTGGAGGACTTTAGAAAGAATGGAGTGGCGATCATCTGCAAAAGCTCGTCGTCCAAATTCAAGCTAGTGCTTTTCGATAAGGAAGGAGGTGTGCGGATGATTCAGGAGTCCGGGAAACGTGGAAAAGCTGGAACCCAAGCGGAYATGTTCTTTGTGCCTTACAACGTCGCGAATATTCAAGAATTCAACCCGATGAAGTATCATTTGGAAGACAAGGATACGCCGATAGCTTTCCACTATTTGGATTCGTTTGAAATGCAAACGGCGACACTTTTGGAGACCCGAAAACACTATATTGCTGTATATGGTGACAATTGGATAAGCGATGTGAAGTACTCTATAACCTTCTTACCGGTGGCGGCAGCTGCTAACGAGCAGCTTGTGGAGATTCAGGACACCGAAAAGGCGATATCCGTGATAAAAAAGGAAATGCTAGACTTCCAGAGAGAATTCACAGAAGCTAAGCGCAAATACGATGAGGCGGTTGCTAAGCTCAAAGTGCAGGACGACGTTATCCTGAAGGCCTTGTCGACCCGTGAGGATCTCTACAACGACGTCGTCAGGCAGTCTCAGGAGCCGTATAACAAGAAAGTGTCGCCGTCGAAATCGTCCGGCGGATTTTTGGGCGGATGGTTTAAATAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGACTTTAGAAAGAATGGAGT</pcr_primer_p1>
		<pcr_primer_p2>GAATCCAAATAGTGGAAAGCTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAGGACTTTAGAAAGAATGGAGTGGCGATCATCTGCAAAAGCTCGTCGTCCAAATTCAAGCTAGTGCTTTTCGATAAGGAAGGAGGTGTGCGGATGATTCAGGAGTCCGGGAAACGTGGAAAAGCTGGAACCCAAGCGGATATGTTCTTTGTGCCTTACAACGTCGCGAATATTCAAGAATTCAACCCGATGAAGTATCATTTGGAAGACAAGGATACGCCGATAGCTTTCCACTATTTGGATTC</canonical_amplicon>
		<polymorphic_amplicon>GAGGACTTTAGAAAGAATGGAGTGGCGATCATCTGCAAAAGCTCGTCGTCCAAATTCAAGCTAGTGCTTTTCGATAAGGAAGGAGGTGTGCGGATGATTCAGGAGTCCGGGAAACGTGGAAAAGCTGGAACCCAAGCGGAYATGTTCTTTGTGCCTTACAACGTCGCGAATATTCAAGAATTCAACCCGATGAAGTATCATTTGGAAGACAAGGATACGCCGATAGCTTTCCACTATTTGGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17415</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>105035</contig_pos>
        <strand>+</strand>
        <context>TACTGTAGCT[A/C]TTTTTCTCGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCT</left_flank>
        <right_flank>TTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGGGTTGCTTTTTCGAAGCCATAACTTTTTGGAAAAATCGAAATTTTTATGTTTTTAATAAAATCTTTTTATTACCCCCTACAAAAATTTTATGAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAAGAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTTTGAACTTGGCCATTCTAGAATGTTCTGTTCGTTTAGGATACTGTAGCTTTAGTCATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTGCAAAAGGATTACTGTAGTTCAGATATGTTTTTAAAGGTTAATGAGTCTCATAACCCATTAATGGGAATTTTTATTATTTGTTGACGTTTGAGGTTTTTGAACTTGGCTAGTCTAGAATTTTCCGTTTGTTTTGGGATACTGTAGCTCTCCGGGATACTGTAGTTTCCGTCATTTGCGAGTTTTACGTTCGTTCTGGAATACTGTAGCCAAAGGCTTTTTTATTTCCTCTCTGGGATACTGTAGCCTGCTGTTGTTTATTTCAGGTTTGGAGTACTGTAGCTCAATATTTTTCTGTTTGTTCAGGGATACTGTAGCTCTCTTTCTCCCGCCGCGTCCCTCGCACATCTGTTCCTCCAAATCTATTTTTTGAGCTCATTTCCGTACCTTGTG</canonical>
            <polymorphic>CTCGGGTTGCTTTTTCGAAGCCATAACTTTTTGGAAAAATCGAAATTTTTATGTTTTTAATAAAATCTTTTTATTACCCCCTACAAAAATTTTATGAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAAGAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTTTGAACTTGGCCATTCTAGAATGTTCTGTTCGTTTAGGATACTGTAGCTTTAGTCATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTMTTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTGCAAAAGGATTACTGTAGTTCAGATATGTTTTTAAAGGTTAATGAGTCTCATAACCCATTAATGGGAATTTTTATTATTTGTTGACGTTTGAGGTTTTTGAACTTGGCTAGTCTAGAATTTTCCGTTTGTTTTGGGATACTGTAGCTCTCCGGGATACTGTAGTTTCCGTCATTTGCGAGTTTTACGTTCGTTCTGGAATACTGTAGCCAAAGGCTTTTTTATTTCCTCTCTGGGATACTGTAGCCTGCTGTTGTTTATTTCAGGTTTGGAGTACTGTAGCTCAATATTTTTCTGTTTGTTCAGGGATACTGTAGCTCTCTTTCTCCCGCCGCGTCCCTCGCACATCTGTTCCTCCAAATCTATTTTTTGAGCTCATTTCCGTACCTTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGAGAGATTTTCGTTTGTT</pcr_primer_p1>
		<pcr_primer_p2>CACTTTTGAAAAAGAGCAACTAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTG</canonical_amplicon>
		<polymorphic_amplicon>ATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTMTTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17416</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>104987</contig_pos>
        <strand>+</strand>
        <context>GACRTTGCTT[A/G]TATCAGGTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTAACGCTTTATTATTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTT</left_flank>
        <right_flank>TATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTTAGATTCCAGAAATTGAGATATTTTTTGTAAAAACGCTCTTGCTCGGGTTGCTTTTTCGAAGCCATAACTTTTTGGAAAAATCGAAATTTTTATGTTTTTAATAAAATCTTTTTATTACCCCCTACAAAAATTTTATGAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAAGAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTTTGAACTTGGCCATTCTAGAATGTTCTGTTCGTTTAGGATACTGTAGCTTTAGTCATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTGCAAAAGGATTACTGTAGTTCAGATATGTTTTTAAAGGTTAATGAGTCTCATAACCCATTAATGGGAATTTTTATTATTTGTTGACGTTTGAGGTTTTTGAACTTGGCTAGTCTAGAATTTTCCGTTTGTTTTGGGATACTGTAGCTCTCCGGGATACTGTAGTTTCCGTCATTTGCGAGTTTTACGTTCGTTCTGGAATACTGTAGCCAAAGGCTTTTTTATTTCCTCTCTGGGATACTGTAGCCTGCTGTTGTTTATTTCAGGTTTGGAGTACTGTAGCTCAATATTTTTCTGTTTGTTCAGGGATACTGTAGCTCTCTTTCTCCCGCCGCGTCCCTCGCA</canonical>
            <polymorphic>AAAATTTAGATTCCAGAAATTGAGATATTTTTTGTAAAAACGCTCTTGCTCGGGTTGCTTTTTCGAAGCCATAACTTTTTGGAAAAATCGAAATTTTTATGTTTTTAATAAAATCTTTTTATTACCCCCTACAAAAATTTTATGAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAAGAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTTTGAACTTGGCCATTCTAGAATGTTCTGTTCGTTTAGGATACTGTAGCTTTAGTCATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTRTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTGCAAAAGGATTACTGTAGTTCAGATATGTTTTTAAAGGTTAATGAGTCTCATAACCCATTAATGGGAATTTTTATTATTTGTTGACGTTTGAGGTTTTTGAACTTGGCTAGTCTAGAATTTTCCGTTTGTTTTGGGATACTGTAGCTCTCCGGGATACTGTAGTTTCCGTCATTTGCGAGTTTTACGTTCGTTCTGGAATACTGTAGCCAAAGGCTTTTTTATTTCCTCTCTGGGATACTGTAGCCTGCTGTTGTTTATTTCAGGTTTGGAGTACTGTAGCTCAATATTTTTCTGTTTGTTCAGGGATACTGTAGCTCTCTTTCTCCCGCCGCGTCCCTCGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGAGAGATTTTCGTTTGTT</pcr_primer_p1>
		<pcr_primer_p2>CACTTTTGAAAAAGAGCAACTAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTG</canonical_amplicon>
		<polymorphic_amplicon>ATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTRTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17417</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>104980</contig_pos>
        <strand>+</strand>
        <context>GTAGCCTGAC[A/G]TTGCTTRTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTGTAGCCTAACGCTTTATTATTTCCGCTCTAAGATACTGTAGCCTGAC</left_flank>
        <right_flank>TTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTTTCAAAATTTAGATTCCAGAAATTGAGATATTTTTTGTAAAAACGCTCTTGCTCGGGTTGCTTTTTCGAAGCCATAACTTTTTGGAAAAATCGAAATTTTTATGTTTTTAATAAAATCTTTTTATTACCCCCTACAAAAATTTTATGAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAAGAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTTTGAACTTGGCCATTCTAGAATGTTCTGTTCGTTTAGGATACTGTAGCTTTAGTCATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTGCAAAAGGATTACTGTAGTTCAGATATGTTTTTAAAGGTTAATGAGTCTCATAACCCATTAATGGGAATTTTTATTATTTGTTGACGTTTGAGGTTTTTGAACTTGGCTAGTCTAGAATTTTCCGTTTGTTTTGGGATACTGTAGCTCTCCGGGATACTGTAGTTTCCGTCATTTGCGAGTTTTACGTTCGTTCTGGAATACTGTAGCCAAAGGCTTTTTTATTTCCTCTCTGGGATACTGTAGCCTGCTGTTGTTTATTTCAGGTTTGGAGTACTGTAGCTCAATATTTTTCTGTTTGTTCAGGGATACTGTAGCTCTCTTTCTCCCGCCGCGTC</canonical>
            <polymorphic>TGTTTTCAAAATTTAGATTCCAGAAATTGAGATATTTTTTGTAAAAACGCTCTTGCTCGGGTTGCTTTTTCGAAGCCATAACTTTTTGGAAAAATCGAAATTTTTATGTTTTTAATAAAATCTTTTTATTACCCCCTACAAAAATTTTATGAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAAGAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTTTGAACTTGGCCATTCTAGAATGTTCTGTTCGTTTAGGATACTGTAGCTTTAGTCATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCTAAGATACTGTAGCCTGACRTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTGCAAAAGGATTACTGTAGTTCAGATATGTTTTTAAAGGTTAATGAGTCTCATAACCCATTAATGGGAATTTTTATTATTTGTTGACGTTTGAGGTTTTTGAACTTGGCTAGTCTAGAATTTTCCGTTTGTTTTGGGATACTGTAGCTCTCCGGGATACTGTAGTTTCCGTCATTTGCGAGTTTTACGTTCGTTCTGGAATACTGTAGCCAAAGGCTTTTTTATTTCCTCTCTGGGATACTGTAGCCTGCTGTTGTTTATTTCAGGTTTGGAGTACTGTAGCTCAATATTTTTCTGTTTGTTCAGGGATACTGTAGCTCTCTTTCTCCCGCCGCGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>251 197 151 145 139 100 17</canonical_bands>
                <polymorphic_bands>396 197 151 139 100 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTGAGAGATTTTCGTTTGTT</pcr_primer_p1>
		<pcr_primer_p2>CACTTTTGAAAAAGAGCAACTAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTG</canonical_amplicon>
		<polymorphic_amplicon>ATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCTAAGATACTGTAGCCTGACRTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17418</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>104962</contig_pos>
        <strand>+</strand>
        <context>WTTCCGCTCT[A/G]AGATACTGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCT</left_flank>
        <right_flank>AGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGGACCATGAAAAATCTGTTTTCAAAATTTAGATTCCAGAAATTGAGATATTTTTTGTAAAAACGCTCTTGCTCGGGTTGCTTTTTCGAAGCCATAACTTTTTGGAAAAATCGAAATTTTTATGTTTTTAATAAAATCTTTTTATTACCCCCTACAAAAATTTTATGAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAAGAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTTTGAACTTGGCCATTCTAGAATGTTCTGTTCGTTTAGGATACTGTAGCTTTAGTCATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTGCAAAAGGATTACTGTAGTTCAGATATGTTTTTAAAGGTTAATGAGTCTCATAACCCATTAATGGGAATTTTTATTATTTGTTGACGTTTGAGGTTTTTGAACTTGGCTAGTCTAGAATTTTCCGTTTGTTTTGGGATACTGTAGCTCTCCGGGATACTGTAGTTTCCGTCATTTGCGAGTTTTACGTTCGTTCTGGAATACTGTAGCCAAAGGCTTTTTTATTTCCTCTCTGGGATACTGTAGCCTGCTGTTGTTTATTTCAGGTTTGGAGTACTGTAGCTCAATATTTTTCTGTTTGTTCAGGGATACTGTAGCTC</canonical>
            <polymorphic>CATGGACCATGAAAAATCTGTTTTCAAAATTTAGATTCCAGAAATTGAGATATTTTTTGTAAAAACGCTCTTGCTCGGGTTGCTTTTTCGAAGCCATAACTTTTTGGAAAAATCGAAATTTTTATGTTTTTAATAAAATCTTTTTATTACCCCCTACAAAAATTTTATGAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAAGAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTTTGAACTTGGCCATTCTAGAATGTTCTGTTCGTTTAGGATACTGTAGCTTTAGTCATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCTRAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTGCAAAAGGATTACTGTAGTTCAGATATGTTTTTAAAGGTTAATGAGTCTCATAACCCATTAATGGGAATTTTTATTATTTGTTGACGTTTGAGGTTTTTGAACTTGGCTAGTCTAGAATTTTCCGTTTGTTTTGGGATACTGTAGCTCTCCGGGATACTGTAGTTTCCGTCATTTGCGAGTTTTACGTTCGTTCTGGAATACTGTAGCCAAAGGCTTTTTTATTTCCTCTCTGGGATACTGTAGCCTGCTGTTGTTTATTTCAGGTTTGGAGTACTGTAGCTCAATATTTTTCTGTTTGTTCAGGGATACTGTAGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGAGAGATTTTCGTTTGTT</pcr_primer_p1>
		<pcr_primer_p2>CACTTTTGAAAAAGAGCAACTAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTG</canonical_amplicon>
		<polymorphic_amplicon>ATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCTRAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17419</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>104952</contig_pos>
        <strand>+</strand>
        <context>CGCTTTWTTA[A/T]TTCCGCTCTR</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTA</left_flank>
        <right_flank>TTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTAACCAAGCATGGACCATGAAAAATCTGTTTTCAAAATTTAGATTCCAGAAATTGAGATATTTTTTGTAAAAACGCTCTTGCTCGGGTTGCTTTTTCGAAGCCATAACTTTTTGGAAAAATCGAAATTTTTATGTTTTTAATAAAATCTTTTTATTACCCCCTACAAAAATTTTATGAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAAGAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTTTGAACTTGGCCATTCTAGAATGTTCTGTTCGTTTAGGATACTGTAGCTTTAGTCATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTGCAAAAGGATTACTGTAGTTCAGATATGTTTTTAAAGGTTAATGAGTCTCATAACCCATTAATGGGAATTTTTATTATTTGTTGACGTTTGAGGTTTTTGAACTTGGCTAGTCTAGAATTTTCCGTTTGTTTTGGGATACTGTAGCTCTCCGGGATACTGTAGTTTCCGTCATTTGCGAGTTTTACGTTCGTTCTGGAATACTGTAGCCAAAGGCTTTTTTATTTCCTCTCTGGGATACTGTAGCCTGCTGTTGTTTATTTCAGGTTTGGAGTACTGTAGCTCAATATTTTTCTGTTTGTTCAGGGAT</canonical>
            <polymorphic>ACTAACCAAGCATGGACCATGAAAAATCTGTTTTCAAAATTTAGATTCCAGAAATTGAGATATTTTTTGTAAAAACGCTCTTGCTCGGGTTGCTTTTTCGAAGCCATAACTTTTTGGAAAAATCGAAATTTTTATGTTTTTAATAAAATCTTTTTATTACCCCCTACAAAAATTTTATGAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAAGAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTTTGAACTTGGCCATTCTAGAATGTTCTGTTCGTTTAGGATACTGTAGCTTTAGTCATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTAWTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTGCAAAAGGATTACTGTAGTTCAGATATGTTTTTAAAGGTTAATGAGTCTCATAACCCATTAATGGGAATTTTTATTATTTGTTGACGTTTGAGGTTTTTGAACTTGGCTAGTCTAGAATTTTCCGTTTGTTTTGGGATACTGTAGCTCTCCGGGATACTGTAGTTTCCGTCATTTGCGAGTTTTACGTTCGTTCTGGAATACTGTAGCCAAAGGCTTTTTTATTTCCTCTCTGGGATACTGTAGCCTGCTGTTGTTTATTTCAGGTTTGGAGTACTGTAGCTCAATATTTTTCTGTTTGTTCAGGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAATGGCAATATAGTTGAT</pcr_primer_p1>
		<pcr_primer_p2>AACAGCTACAGTACCCTAGACCT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTTTGAACTTGGCCATTCTAGAATGTTCTGTTCGTTTAGGATACTGTAGCTTTAGTCATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTTTGAACTTGGCCATTCTAGAATGTTCTGTTCGTTTAGGATACTGTAGCTTTAGTCATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTAWTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17420</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>104948</contig_pos>
        <strand>+</strand>
        <context>CTAACGCTTT[A/T]TTAWTTCCGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTT</left_flank>
        <right_flank>TTATTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGACTAACCAAGCATGGACCATGAAAAATCTGTTTTCAAAATTTAGATTCCAGAAATTGAGATATTTTTTGTAAAAACGCTCTTGCTCGGGTTGCTTTTTCGAAGCCATAACTTTTTGGAAAAATCGAAATTTTTATGTTTTTAATAAAATCTTTTTATTACCCCCTACAAAAATTTTATGAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAAGAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTTTGAACTTGGCCATTCTAGAATGTTCTGTTCGTTTAGGATACTGTAGCTTTAGTCATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTGCAAAAGGATTACTGTAGTTCAGATATGTTTTTAAAGGTTAATGAGTCTCATAACCCATTAATGGGAATTTTTATTATTTGTTGACGTTTGAGGTTTTTGAACTTGGCTAGTCTAGAATTTTCCGTTTGTTTTGGGATACTGTAGCTCTCCGGGATACTGTAGTTTCCGTCATTTGCGAGTTTTACGTTCGTTCTGGAATACTGTAGCCAAAGGCTTTTTTATTTCCTCTCTGGGATACTGTAGCCTGCTGTTGTTTATTTCAGGTTTGGAGTACTGTAGCTCAATATTTTTCTGTTTGTTCAG</canonical>
            <polymorphic>ATGGACTAACCAAGCATGGACCATGAAAAATCTGTTTTCAAAATTTAGATTCCAGAAATTGAGATATTTTTTGTAAAAACGCTCTTGCTCGGGTTGCTTTTTCGAAGCCATAACTTTTTGGAAAAATCGAAATTTTTATGTTTTTAATAAAATCTTTTTATTACCCCCTACAAAAATTTTATGAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAAGAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTTTGAACTTGGCCATTCTAGAATGTTCTGTTCGTTTAGGATACTGTAGCTTTAGTCATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTWTTATTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTGCAAAAGGATTACTGTAGTTCAGATATGTTTTTAAAGGTTAATGAGTCTCATAACCCATTAATGGGAATTTTTATTATTTGTTGACGTTTGAGGTTTTTGAACTTGGCTAGTCTAGAATTTTCCGTTTGTTTTGGGATACTGTAGCTCTCCGGGATACTGTAGTTTCCGTCATTTGCGAGTTTTACGTTCGTTCTGGAATACTGTAGCCAAAGGCTTTTTTATTTCCTCTCTGGGATACTGTAGCCTGCTGTTGTTTATTTCAGGTTTGGAGTACTGTAGCTCAATATTTTTCTGTTTGTTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAATGGCAATATAGTTGAT</pcr_primer_p1>
		<pcr_primer_p2>AACAGCTACAGTACCCTAGACCT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTTTGAACTTGGCCATTCTAGAATGTTCTGTTCGTTTAGGATACTGTAGCTTTAGTCATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTTTGAACTTGGCCATTCTAGAATGTTCTGTTCGTTTAGGATACTGTAGCTTTAGTCATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTWTTATTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17421</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>104745</contig_pos>
        <strand>+</strand>
        <context>AGTGCAARAG[A/G]ATTACTGTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAAGAG</left_flank>
        <right_flank>ATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACCTTCCCTTGTGAGCTTCGAAATGAGTATAAACATGACTAGGTTTCTTAAATTTTGATTTTTGAGTTTAAAGGCGCATAAGACCCTCGAAAAAACTGATATATGCCAAAATGGGTCGTGTTTATATTCGTTTTGAAGCTCTTTGAAAATCAAAGTCGAAAACCATATTTTTATTATATTTAGACAAAAACTAGCCGAGTTATGGACTAACCAAGCATGGACCATGAAAAATCTGTTTTCAAAATTTAGATTCCAGAAATTGAGATATTTTTTGTAAAAACGCTCTTGCTCGGGTTGCTTTTTCGAAGCCATAACTTTTTGGAAAAATCGAAATTTTTATGTTTTTAATAAAATCTTTTTATTACCCCCTACAAAAATTTTATGAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAAGAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTTTGAACTTGGCCATTCTAGAATGTTCTGTTCGTTTAGGATACTGTAGCTTTAGTCATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTGCAAAAGGATTACTGTAGTTCAGATATGTTTTTAAAGGTTAATGAGTCTCATAACCCATTAATGGGAATTTTTATTATTTGTTGACGTTTGAGGTTTTTGA</canonical>
            <polymorphic>AAACCTTCCCTTGTGAGCTTCGAAATGAGTATAAACATGACTAGGTTTCTTAAATTTTGATTTTTGAGTTTAAAGGCGCATAAGACCCTCGAAAAAACTGATATATGCCAAAATGGGTCGTGTTTATATTCGTTTTGAAGCTCTTTGAAAATCAAAGTCGAAAACCATATTTTTATTATATTTAGACAAAAACTAGCCGAGTTATGGACTAACCAAGCATGGACCATGAAAAATCTGTTTTCAAAATTTAGATTCCAGAAATTGAGATATTTTTTGTAAAAACGCTCTTGCTCGGGTTGCTTTTTCGAAGCCATAACTTTTTGGAAAAATCGAAATTTTTATGTTTTTAATAAAATCTTTTTATTACCCCCTACAAAAATTTTATGAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAAGAGRATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTTTGAACTTGGCCATTCTAGAATGTTCTGTTCGTTTAGGATACTGTAGCTTTAGTCATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTGCAAAAGGATTACTGTAGTTCAGATATGTTTTTAAAGGTTAATGAGTCTCATAACCCATTAATGGGAATTTTTATTATTTGTTGACGTTTGAGGTTTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>466 192 74 52 44 38 35 34 30 20 15</canonical_bands>
                <polymorphic_bands>500 192 74 52 44 38 35 30 20 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCTTTTTATTACCCCCTACA</pcr_primer_p1>
		<pcr_primer_p2>AAAACCTCAAACGTCATTAAATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATCTTTTTATTACCCCCTACAAAAATTTTATGAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAAGAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAATCTTTTTATTACCCCCTACAAAAATTTTATGAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAAGAGRATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17422</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>104742</contig_pos>
        <strand>+</strand>
        <context>AAAAGTGCAA[A/G]AGRATTACTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAA</left_flank>
        <right_flank>AGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGAT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAACCTTCCCTTGTGAGCTTCGAAATGAGTATAAACATGACTAGGTTTCTTAAATTTTGATTTTTGAGTTTAAAGGCGCATAAGACCCTCGAAAAAACTGATATATGCCAAAATGGGTCGTGTTTATATTCGTTTTGAAGCTCTTTGAAAATCAAAGTCGAAAACCATATTTTTATTATATTTAGACAAAAACTAGCCGAGTTATGGACTAACCAAGCATGGACCATGAAAAATCTGTTTTCAAAATTTAGATTCCAGAAATTGAGATATTTTTTGTAAAAACGCTCTTGCTCGGGTTGCTTTTTCGAAGCCATAACTTTTTGGAAAAATCGAAATTTTTATGTTTTTAATAAAATCTTTTTATTACCCCCTACAAAAATTTTATGAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAAGAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTTTGAACTTGGCCATTCTAGAATGTTCTGTTCGTTTAGGATACTGTAGCTTTAGTCATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTGCAAAAGGATTACTGTAGTTCAGATATGTTTTTAAAGGTTAATGAGTCTCATAACCCATTAATGGGAATTTTTATTATTTGTTGACGTTTGAGGTTTT</canonical>
            <polymorphic>GAAAAACCTTCCCTTGTGAGCTTCGAAATGAGTATAAACATGACTAGGTTTCTTAAATTTTGATTTTTGAGTTTAAAGGCGCATAAGACCCTCGAAAAAACTGATATATGCCAAAATGGGTCGTGTTTATATTCGTTTTGAAGCTCTTTGAAAATCAAAGTCGAAAACCATATTTTTATTATATTTAGACAAAAACTAGCCGAGTTATGGACTAACCAAGCATGGACCATGAAAAATCTGTTTTCAAAATTTAGATTCCAGAAATTGAGATATTTTTTGTAAAAACGCTCTTGCTCGGGTTGCTTTTTCGAAGCCATAACTTTTTGGAAAAATCGAAATTTTTATGTTTTTAATAAAATCTTTTTATTACCCCCTACAAAAATTTTATGAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAARAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTTTGAACTTGGCCATTCTAGAATGTTCTGTTCGTTTAGGATACTGTAGCTTTAGTCATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTGCAAAAGGATTACTGTAGTTCAGATATGTTTTTAAAGGTTAATGAGTCTCATAACCCATTAATGGGAATTTTTATTATTTGTTGACGTTTGAGGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCTTTTTATTACCCCCTACA</pcr_primer_p1>
		<pcr_primer_p2>AAAACCTCAAACGTCATTAAATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATCTTTTTATTACCCCCTACAAAAATTTTATGAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAAGAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAATCTTTTTATTACCCCCTACAAAAATTTTATGAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAARAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17423</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>104727</contig_pos>
        <strand>+</strand>
        <context>TAGTTGTTCA[C/T]TTCTAAAAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGTAATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCA</left_flank>
        <right_flank>TTCTAAAAGTGCAAGAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAAT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCAACCGTTGTCTGAAAAACCTTCCCTTGTGAGCTTCGAAATGAGTATAAACATGACTAGGTTTCTTAAATTTTGATTTTTGAGTTTAAAGGCGCATAAGACCCTCGAAAAAACTGATATATGCCAAAATGGGTCGTGTTTATATTCGTTTTGAAGCTCTTTGAAAATCAAAGTCGAAAACCATATTTTTATTATATTTAGACAAAAACTAGCCGAGTTATGGACTAACCAAGCATGGACCATGAAAAATCTGTTTTCAAAATTTAGATTCCAGAAATTGAGATATTTTTTGTAAAAACGCTCTTGCTCGGGTTGCTTTTTCGAAGCCATAACTTTTTGGAAAAATCGAAATTTTTATGTTTTTAATAAAATCTTTTTATTACCCCCTACAAAAATTTTATGAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAAGAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTTTGAACTTGGCCATTCTAGAATGTTCTGTTCGTTTAGGATACTGTAGCTTTAGTCATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTGCAAAAGGATTACTGTAGTTCAGATATGTTTTTAAAGGTTAATGAGTCTCATAACCCATTAATGGGAATTTTTATTATTTGTT</canonical>
            <polymorphic>TCTCAACCGTTGTCTGAAAAACCTTCCCTTGTGAGCTTCGAAATGAGTATAAACATGACTAGGTTTCTTAAATTTTGATTTTTGAGTTTAAAGGCGCATAAGACCCTCGAAAAAACTGATATATGCCAAAATGGGTCGTGTTTATATTCGTTTTGAAGCTCTTTGAAAATCAAAGTCGAAAACCATATTTTTATTATATTTAGACAAAAACTAGCCGAGTTATGGACTAACCAAGCATGGACCATGAAAAATCTGTTTTCAAAATTTAGATTCCAGAAATTGAGATATTTTTTGTAAAAACGCTCTTGCTCGGGTTGCTTTTTCGAAGCCATAACTTTTTGGAAAAATCGAAATTTTTATGTTTTTAATAAAATCTTTTTATTACCCCCTACAAAAATTTTATGAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCAYTTCTAAAAGTGCAAGAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTTTGAACTTGGCCATTCTAGAATGTTCTGTTCGTTTAGGATACTGTAGCTTTAGTCATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTGCAAAAGGATTACTGTAGTTCAGATATGTTTTTAAAGGTTAATGAGTCTCATAACCCATTAATGGGAATTTTTATTATTTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>310 165 121 107 82 54 49 33 31 27 12 9</canonical_bands>
                <polymorphic_bands>310 165 121 107 82 61 54 33 31 27 9</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCTTTTTATTACCCCCTACA</pcr_primer_p1>
		<pcr_primer_p2>AAAACCTCAAACGTCATTAAATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATCTTTTTATTACCCCCTACAAAAATTTTATGAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAAGAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAATCTTTTTATTACCCCCTACAAAAATTTTATGAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCAYTTCTAAAAGTGCAAGAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17424</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>104706</contig_pos>
        <strand>+</strand>
        <context>GGGAATAGAA[A/C]TAGAAATTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATCAAATTTTCTAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAA</left_flank>
        <right_flank>TAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAAGAGAATTACTGTAGT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTACAAATTTTGAGCAAATTCTCAACCGTTGTCTGAAAAACCTTCCCTTGTGAGCTTCGAAATGAGTATAAACATGACTAGGTTTCTTAAATTTTGATTTTTGAGTTTAAAGGCGCATAAGACCCTCGAAAAAACTGATATATGCCAAAATGGGTCGTGTTTATATTCGTTTTGAAGCTCTTTGAAAATCAAAGTCGAAAACCATATTTTTATTATATTTAGACAAAAACTAGCCGAGTTATGGACTAACCAAGCATGGACCATGAAAAATCTGTTTTCAAAATTTAGATTCCAGAAATTGAGATATTTTTTGTAAAAACGCTCTTGCTCGGGTTGCTTTTTCGAAGCCATAACTTTTTGGAAAAATCGAAATTTTTATGTTTTTAATAAAATCTTTTTATTACCCCCTACAAAAATTTTATGAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAAGAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTTTGAACTTGGCCATTCTAGAATGTTCTGTTCGTTTAGGATACTGTAGCTTTAGTCATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTGCAAAAGGATTACTGTAGTTCAGATATGTTTTTAAAGGTTAATGAGTCTCATAACCCATTAA</canonical>
            <polymorphic>TTGTACAAATTTTGAGCAAATTCTCAACCGTTGTCTGAAAAACCTTCCCTTGTGAGCTTCGAAATGAGTATAAACATGACTAGGTTTCTTAAATTTTGATTTTTGAGTTTAAAGGCGCATAAGACCCTCGAAAAAACTGATATATGCCAAAATGGGTCGTGTTTATATTCGTTTTGAAGCTCTTTGAAAATCAAAGTCGAAAACCATATTTTTATTATATTTAGACAAAAACTAGCCGAGTTATGGACTAACCAAGCATGGACCATGAAAAATCTGTTTTCAAAATTTAGATTCCAGAAATTGAGATATTTTTTGTAAAAACGCTCTTGCTCGGGTTGCTTTTTCGAAGCCATAACTTTTTGGAAAAATCGAAATTTTTATGTTTTTAATAAAATCTTTTTATTACCCCCTACAAAAATTTTATGAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAAMTAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAAGAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTTTGAACTTGGCCATTCTAGAATGTTCTGTTCGTTTAGGATACTGTAGCTTTAGTCATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTGCAAAAGGATTACTGTAGTTCAGATATGTTTTTAAAGGTTAATGAGTCTCATAACCCATTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCTTTTTATTACCCCCTACA</pcr_primer_p1>
		<pcr_primer_p2>AAAACCTCAAACGTCATTAAATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATCTTTTTATTACCCCCTACAAAAATTTTATGAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAAGAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAATCTTTTTATTACCCCCTACAAAAATTTTATGAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAAMTAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAAGAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17438</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>310367</contig_pos>
        <strand></strand>
        <context>TTGATGGGCA[T/A]TTCCTGACCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CGGGTCAGTCCAAGTATGACGATGGCCCGCTACACAGCCGTTGATGGGCA</left_flank>
        <right_flank>TTCCTGACCAAAACTGACCATCTTGATTTATGTTTCTTAAAAAAGCAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGGTGTGCGGAATGGAACTTTTCGGAATCTTGGAATTTTTCTTTTTGTCCTGATTAACTTTGATCTAAAAGAAACATCCCTAATGTATCAGAATTTTCCGAATTCAGATTTTTGTTCTTTCTGAAAACCCGACATTCTGAAACTCGTTTGAAAACTCTGGGTGAACTAAAATAAAATTGACAAAAAAAACGAATTTATCAGGATCCTGGAATTCTGAGAAGCTGACCATGAACTGATCAAACTTCGACCTTACTTCCACTTTCGACCTAAACTTGAAGCCTGTAACAATAATCCCCCTTTACTTTGAGATAAGTTATCTCGGCTCCAATGGAAGATATTAAAAAGCGATCAACTAACAAAATATTTTCGATAGTATGATAAACATTTTATTAGTTGTTCACATTTTGATATCTCTCACAATAACCGAGATAATTTAAGTCAAAGTTGCGGGTCAGTCCAAGTATGACGATGGCCCGCTACACAGCCGTTGATGGGCATTTCCTGACCAAAACTGACCATCTTGATTTATGTTTCTTAAAAAAGCAATTTCCGTTTTTAAAGTAAAAGTCTAGATGATCCTAATTTTCTCGGTTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGGGGGGTTCGGCTTTTGGAAGGATTTTGGTCAGGTTTTTGTCAGAAGCTGCCCACTGACAGCAGTGGAACGGACAATGGTCAGATTTTGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGAAAGCTGGCCGGTAATTCGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGTTCTTTCGGACCGTCTGAATTCCCAATTTTGGATGAAGTCAGATTTCTTCAAATGCTTTACTAACCAGCTTCGTCTGTTTCATCTTGAAGTCTGATCCTGAAGTCATAACAATCCTTGAATTCCTGAATTTTTGAATTTTCATTCTTAAATTTCTCTCATAAAAAATTCTCATCCCAAAAAAAGCTTTTTGAACCTTCAA</canonical>
            <polymorphic>ATAGGTGTGCGGAATGGAACTTTTCGGAATCTTGGAATTTTTCTTTTTGTCCTGATTAACTTTGATCTAAAAGAAACATCCCTAATGTATCAGAATTTTCCGAATTCAGATTTTTGTTCTTTCTGAAAACCCGACATTCTGAAACTCGTTTGAAAACTCTGGGTGAACTAAAATAAAATTGACAAAAAAAACGAATTTATCAGGATCCTGGAATTCTGAGAAGCTGACCATGAACTGATCAAACTTCGACCTTACTTCCACTTTCGACCTAAACTTGAAGCCTGTAACAATAATCCCCCTTTACTTTGAGATAAGTTATCTCGGCTCCAATGGAAGATATTAAAAAGCGATCAACTAACAAAATATTTTCGATAGTATGATAAACATTTTATTAGTTGTTCACATTTTGATATCTCTCACAATAACCGAGATAATTTAAGTCAAAGTTGCGGGTCAGTCCAAGTATGACGATGGCCCGCTACACAGCCGTTGATGGGCAWTTCCTGACCAAAACTGACCATCTTGATTTATGTTTCTTAAAAAAGCAATTTCCGTTTTTAAAGTAAAAGTCTAGATGATCCTAATTTTCTCGGTTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGGGGGGTTCGGCTTTTGGAAGGATTTTGGTCAGGTTTTTGTCAGAAGCTGCCCACTGACAGCAGTGGAACGGACAATGGTCAGATTTTGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGAAAGCTGGCCGGTAATTCGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGTTCTTTCGGACCGTCTGAATTCCCAATTTTGGATGAAGTCAGATTTCTTCAAATGCTTTACTAACCAGCTTCGTCTGTTTCATCTTGAAGTCTGATCCTGAAGTCATAACAATCCTTGAATTCCTGAATTTTTGAATTTTCATTCTTAAATTTCTCTCATAAAAAATTCTCATCCCAAAAAAAGCTTTTTGAACCTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCACTTTCGACCTAAACTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTACTTTAAAAACGGAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>313</pcr_amplicon_size>
		<canonical_amplicon>TTCCACTTTCGACCTAAACTTGAAGCCTGTAACAATAATCCCCCTTTACTTTGAGATAAGTTATCTCGGCTCCAATGGAAGATATTAAAAAGCGATCAACTAACAAAATATTTTCGATAGTATGATAAACATTTTATTAGTTGTTCACATTTTGATATCTCTCACAATAACCGAGATAATTTAAGTCAAAGTTGCGGGTCAGTCCAAGTATGACGATGGCCCGCTACACAGCCGTTGATGGGCATTTCCTGACCAAAACTGACCATCTTGATTTATGTTTCTTAAAAAAGCAATTTCCGTTTTTAAAGTAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTCCACTTTCGACCTAAACTTGAAGCCTGTAACAATAATCCCCCTTTACTTTGAGATAAGTTATCTCGGCTCCAATGGAAGATATTAAAAAGCGATCAACTAACAAAATATTTTCGATAGTATGATAAACATTTTATTAGTTGTTCACATTTTGATATCTCTCACAATAACCGAGATAATTTAAGTCAAAGTTGCGGGTCAGTCCAAGTATGACGATGGCCCGCTACACAGCCGTTGATGGGCAWTTCCTGACCAAAACTGACCATCTTGATTTATGTTTCTTAAAAAAGCAATTTCCGTTTTTAAAGTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17439</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>310398</contig_pos>
        <strand></strand>
        <context>TCTTGATTTA[T/A]GTTTCTWAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ACACAGCCGTTGATGGGCATTTCCTGACCAAAACTGACCATCTTGATTTA</left_flank>
        <right_flank>GTTTCTTAAAAAAGCAATTTCCGTTTTTAAAGTAAAAGTCTAGATGATCC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGAATTTTTCTTTTTGTCCTGATTAACTTTGATCTAAAAGAAACATCCCTAATGTATCAGAATTTTCCGAATTCAGATTTTTGTTCTTTCTGAAAACCCGACATTCTGAAACTCGTTTGAAAACTCTGGGTGAACTAAAATAAAATTGACAAAAAAAACGAATTTATCAGGATCCTGGAATTCTGAGAAGCTGACCATGAACTGATCAAACTTCGACCTTACTTCCACTTTCGACCTAAACTTGAAGCCTGTAACAATAATCCCCCTTTACTTTGAGATAAGTTATCTCGGCTCCAATGGAAGATATTAAAAAGCGATCAACTAACAAAATATTTTCGATAGTATGATAAACATTTTATTAGTTGTTCACATTTTGATATCTCTCACAATAACCGAGATAATTTAAGTCAAAGTTGCGGGTCAGTCCAAGTATGACGATGGCCCGCTACACAGCCGTTGATGGGCATTTCCTGACCAAAACTGACCATCTTGATTTATGTTTCTTAAAAAAGCAATTTCCGTTTTTAAAGTAAAAGTCTAGATGATCCTAATTTTCTCGGTTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGGGGGGTTCGGCTTTTGGAAGGATTTTGGTCAGGTTTTTGTCAGAAGCTGCCCACTGACAGCAGTGGAACGGACAATGGTCAGATTTTGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGAAAGCTGGCCGGTAATTCGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGTTCTTTCGGACCGTCTGAATTCCCAATTTTGGATGAAGTCAGATTTCTTCAAATGCTTTACTAACCAGCTTCGTCTGTTTCATCTTGAAGTCTGATCCTGAAGTCATAACAATCCTTGAATTCCTGAATTTTTGAATTTTCATTCTTAAATTTCTCTCATAAAAAATTCTCATCCCAAAAAAAGCTTTTTGAACCTTCAATTTCCATTTTCAGCATCGCTCATAAATCTCT</canonical>
            <polymorphic>TTGGAATTTTTCTTTTTGTCCTGATTAACTTTGATCTAAAAGAAACATCCCTAATGTATCAGAATTTTCCGAATTCAGATTTTTGTTCTTTCTGAAAACCCGACATTCTGAAACTCGTTTGAAAACTCTGGGTGAACTAAAATAAAATTGACAAAAAAAACGAATTTATCAGGATCCTGGAATTCTGAGAAGCTGACCATGAACTGATCAAACTTCGACCTTACTTCCACTTTCGACCTAAACTTGAAGCCTGTAACAATAATCCCCCTTTACTTTGAGATAAGTTATCTCGGCTCCAATGGAAGATATTAAAAAGCGATCAACTAACAAAATATTTTCGATAGTATGATAAACATTTTATTAGTTGTTCACATTTTGATATCTCTCACAATAACCGAGATAATTTAAGTCAAAGTTGCGGGTCAGTCCAAGTATGACGATGGCCCGCTACACAGCCGTTGATGGGCATTTCCTGACCAAAACTGACCATCTTGATTTAWGTTTCTTAAAAAAGCAATTTCCGTTTTTAAAGTAAAAGTCTAGATGATCCTAATTTTCTCGGTTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGGGGGGTTCGGCTTTTGGAAGGATTTTGGTCAGGTTTTTGTCAGAAGCTGCCCACTGACAGCAGTGGAACGGACAATGGTCAGATTTTGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGAAAGCTGGCCGGTAATTCGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGTTCTTTCGGACCGTCTGAATTCCCAATTTTGGATGAAGTCAGATTTCTTCAAATGCTTTACTAACCAGCTTCGTCTGTTTCATCTTGAAGTCTGATCCTGAAGTCATAACAATCCTTGAATTCCTGAATTTTTGAATTTTCATTCTTAAATTTCTCTCATAAAAAATTCTCATCCCAAAAAAAGCTTTTTGAACCTTCAATTTCCATTTTCAGCATCGCTCATAAATCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCACTTTCGACCTAAACTT</pcr_primer_p1>
		<pcr_primer_p2>CCGAGAAAATTAGGATCATCT</pcr_primer_p2>
		<pcr_amplicon_size>338</pcr_amplicon_size>
		<canonical_amplicon>TTCCACTTTCGACCTAAACTTGAAGCCTGTAACAATAATCCCCCTTTACTTTGAGATAAGTTATCTCGGCTCCAATGGAAGATATTAAAAAGCGATCAACTAACAAAATATTTTCGATAGTATGATAAACATTTTATTAGTTGTTCACATTTTGATATCTCTCACAATAACCGAGATAATTTAAGTCAAAGTTGCGGGTCAGTCCAAGTATGACGATGGCCCGCTACACAGCCGTTGATGGGCATTTCCTGACCAAAACTGACCATCTTGATTTATGTTTCTTAAAAAAGCAATTTCCGTTTTTAAAGTAAAAGTCTAGATGATCCTAATTTTCTCGG</canonical_amplicon>
		<polymorphic_amplicon>TTCCACTTTCGACCTAAACTTGAAGCCTGTAACAATAATCCCCCTTTACTTTGAGATAAGTTATCTCGGCTCCAATGGAAGATATTAAAAAGCGATCAACTAACAAAATATTTTCGATAGTATGATAAACATTTTATTAGTTGTTCACATTTTGATATCTCTCACAATAACCGAGATAATTTAAGTCAAAGTTGCGGGTCAGTCCAAGTATGACGATGGCCCGCTACACAGCCGTTGATGGGCATTTCCTGACCAAAACTGACCATCTTGATTTAWGTTTCTTAAAAAAGCAATTTCCGTTTTTAAAGTAAAAGTCTAGATGATCCTAATTTTCTCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17440</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>310405</contig_pos>
        <strand></strand>
        <context>TTAWGTTTCT[T/A]AAAAAAGCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CGTTGATGGGCATTTCCTGACCAAAACTGACCATCTTGATTTATGTTTCT</left_flank>
        <right_flank>AAAAAAGCAATTTCCGTTTTTAAAGTAAAAGTCTAGATGATCCTAATTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCTTTTTGTCCTGATTAACTTTGATCTAAAAGAAACATCCCTAATGTATCAGAATTTTCCGAATTCAGATTTTTGTTCTTTCTGAAAACCCGACATTCTGAAACTCGTTTGAAAACTCTGGGTGAACTAAAATAAAATTGACAAAAAAAACGAATTTATCAGGATCCTGGAATTCTGAGAAGCTGACCATGAACTGATCAAACTTCGACCTTACTTCCACTTTCGACCTAAACTTGAAGCCTGTAACAATAATCCCCCTTTACTTTGAGATAAGTTATCTCGGCTCCAATGGAAGATATTAAAAAGCGATCAACTAACAAAATATTTTCGATAGTATGATAAACATTTTATTAGTTGTTCACATTTTGATATCTCTCACAATAACCGAGATAATTTAAGTCAAAGTTGCGGGTCAGTCCAAGTATGACGATGGCCCGCTACACAGCCGTTGATGGGCATTTCCTGACCAAAACTGACCATCTTGATTTATGTTTCTTAAAAAAGCAATTTCCGTTTTTAAAGTAAAAGTCTAGATGATCCTAATTTTCTCGGTTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGGGGGGTTCGGCTTTTGGAAGGATTTTGGTCAGGTTTTTGTCAGAAGCTGCCCACTGACAGCAGTGGAACGGACAATGGTCAGATTTTGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGAAAGCTGGCCGGTAATTCGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGTTCTTTCGGACCGTCTGAATTCCCAATTTTGGATGAAGTCAGATTTCTTCAAATGCTTTACTAACCAGCTTCGTCTGTTTCATCTTGAAGTCTGATCCTGAAGTCATAACAATCCTTGAATTCCTGAATTTTTGAATTTTCATTCTTAAATTTCTCTCATAAAAAATTCTCATCCCAAAAAAAGCTTTTTGAACCTTCAATTTCCATTTTCAGCATCGCTCATAAATCTCTCTGATTG</canonical>
            <polymorphic>TTTTCTTTTTGTCCTGATTAACTTTGATCTAAAAGAAACATCCCTAATGTATCAGAATTTTCCGAATTCAGATTTTTGTTCTTTCTGAAAACCCGACATTCTGAAACTCGTTTGAAAACTCTGGGTGAACTAAAATAAAATTGACAAAAAAAACGAATTTATCAGGATCCTGGAATTCTGAGAAGCTGACCATGAACTGATCAAACTTCGACCTTACTTCCACTTTCGACCTAAACTTGAAGCCTGTAACAATAATCCCCCTTTACTTTGAGATAAGTTATCTCGGCTCCAATGGAAGATATTAAAAAGCGATCAACTAACAAAATATTTTCGATAGTATGATAAACATTTTATTAGTTGTTCACATTTTGATATCTCTCACAATAACCGAGATAATTTAAGTCAAAGTTGCGGGTCAGTCCAAGTATGACGATGGCCCGCTACACAGCCGTTGATGGGCATTTCCTGACCAAAACTGACCATCTTGATTTATGTTTCTWAAAAAAGCAATTTCCGTTTTTAAAGTAAAAGTCTAGATGATCCTAATTTTCTCGGTTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGGGGGGTTCGGCTTTTGGAAGGATTTTGGTCAGGTTTTTGTCAGAAGCTGCCCACTGACAGCAGTGGAACGGACAATGGTCAGATTTTGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGAAAGCTGGCCGGTAATTCGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGTTCTTTCGGACCGTCTGAATTCCCAATTTTGGATGAAGTCAGATTTCTTCAAATGCTTTACTAACCAGCTTCGTCTGTTTCATCTTGAAGTCTGATCCTGAAGTCATAACAATCCTTGAATTCCTGAATTTTTGAATTTTCATTCTTAAATTTCTCTCATAAAAAATTCTCATCCCAAAAAAAGCTTTTTGAACCTTCAATTTCCATTTTCAGCATCGCTCATAAATCTCTCTGATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>284 208 180 101 96 92 21 18</canonical_bands>
                <polymorphic_bands>284 208 180 122 96 92 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCACTTTCGACCTAAACTT</pcr_primer_p1>
		<pcr_primer_p2>CCGAGAAAATTAGGATCATCT</pcr_primer_p2>
		<pcr_amplicon_size>338</pcr_amplicon_size>
		<canonical_amplicon>TTCCACTTTCGACCTAAACTTGAAGCCTGTAACAATAATCCCCCTTTACTTTGAGATAAGTTATCTCGGCTCCAATGGAAGATATTAAAAAGCGATCAACTAACAAAATATTTTCGATAGTATGATAAACATTTTATTAGTTGTTCACATTTTGATATCTCTCACAATAACCGAGATAATTTAAGTCAAAGTTGCGGGTCAGTCCAAGTATGACGATGGCCCGCTACACAGCCGTTGATGGGCATTTCCTGACCAAAACTGACCATCTTGATTTATGTTTCTTAAAAAAGCAATTTCCGTTTTTAAAGTAAAAGTCTAGATGATCCTAATTTTCTCGG</canonical_amplicon>
		<polymorphic_amplicon>TTCCACTTTCGACCTAAACTTGAAGCCTGTAACAATAATCCCCCTTTACTTTGAGATAAGTTATCTCGGCTCCAATGGAAGATATTAAAAAGCGATCAACTAACAAAATATTTTCGATAGTATGATAAACATTTTATTAGTTGTTCACATTTTGATATCTCTCACAATAACCGAGATAATTTAAGTCAAAGTTGCGGGTCAGTCCAAGTATGACGATGGCCCGCTACACAGCCGTTGATGGGCATTTCCTGACCAAAACTGACCATCTTGATTTATGTTTCTWAAAAAAGCAATTTCCGTTTTTAAAGTAAAAGTCTAGATGATCCTAATTTTCTCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17441</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>310438</contig_pos>
        <strand></strand>
        <context>AAGTAAAAGT[C/A]TAGATGATCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TCTTGATTTATGTTTCTTAAAAAAGCAATTTCCGTTTTTAAAGTAAAAGT</left_flank>
        <right_flank>TAGATGATCCTAATTTTCTCGGTTGTCGGCTTGCAACTTCTGGACGGAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAACATCCCTAATGTATCAGAATTTTCCGAATTCAGATTTTTGTTCTTTCTGAAAACCCGACATTCTGAAACTCGTTTGAAAACTCTGGGTGAACTAAAATAAAATTGACAAAAAAAACGAATTTATCAGGATCCTGGAATTCTGAGAAGCTGACCATGAACTGATCAAACTTCGACCTTACTTCCACTTTCGACCTAAACTTGAAGCCTGTAACAATAATCCCCCTTTACTTTGAGATAAGTTATCTCGGCTCCAATGGAAGATATTAAAAAGCGATCAACTAACAAAATATTTTCGATAGTATGATAAACATTTTATTAGTTGTTCACATTTTGATATCTCTCACAATAACCGAGATAATTTAAGTCAAAGTTGCGGGTCAGTCCAAGTATGACGATGGCCCGCTACACAGCCGTTGATGGGCATTTCCTGACCAAAACTGACCATCTTGATTTATGTTTCTTAAAAAAGCAATTTCCGTTTTTAAAGTAAAAGTCTAGATGATCCTAATTTTCTCGGTTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGGGGGGTTCGGCTTTTGGAAGGATTTTGGTCAGGTTTTTGTCAGAAGCTGCCCACTGACAGCAGTGGAACGGACAATGGTCAGATTTTGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGAAAGCTGGCCGGTAATTCGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGTTCTTTCGGACCGTCTGAATTCCCAATTTTGGATGAAGTCAGATTTCTTCAAATGCTTTACTAACCAGCTTCGTCTGTTTCATCTTGAAGTCTGATCCTGAAGTCATAACAATCCTTGAATTCCTGAATTTTTGAATTTTCATTCTTAAATTTCTCTCATAAAAAATTCTCATCCCAAAAAAAGCTTTTTGAACCTTCAATTTCCATTTTCAGCATCGCTCATAAATCTCTCTGATTGACGAGAGTCTACCCGATCATTCCAATTTAGATG</canonical>
            <polymorphic>AGAAACATCCCTAATGTATCAGAATTTTCCGAATTCAGATTTTTGTTCTTTCTGAAAACCCGACATTCTGAAACTCGTTTGAAAACTCTGGGTGAACTAAAATAAAATTGACAAAAAAAACGAATTTATCAGGATCCTGGAATTCTGAGAAGCTGACCATGAACTGATCAAACTTCGACCTTACTTCCACTTTCGACCTAAACTTGAAGCCTGTAACAATAATCCCCCTTTACTTTGAGATAAGTTATCTCGGCTCCAATGGAAGATATTAAAAAGCGATCAACTAACAAAATATTTTCGATAGTATGATAAACATTTTATTAGTTGTTCACATTTTGATATCTCTCACAATAACCGAGATAATTTAAGTCAAAGTTGCGGGTCAGTCCAAGTATGACGATGGCCCGCTACACAGCCGTTGATGGGCATTTCCTGACCAAAACTGACCATCTTGATTTATGTTTCTTAAAAAAGCAATTTCCGTTTTTAAAGTAAAAGTMTAGATGATCCTAATTTTCTCGGTTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGGGGGGTTCGGCTTTTGGAAGGATTTTGGTCAGGTTTTTGTCAGAAGCTGCCCACTGACAGCAGTGGAACGGACAATGGTCAGATTTTGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGAAAGCTGGCCGGTAATTCGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGTTCTTTCGGACCGTCTGAATTCCCAATTTTGGATGAAGTCAGATTTCTTCAAATGCTTTACTAACCAGCTTCGTCTGTTTCATCTTGAAGTCTGATCCTGAAGTCATAACAATCCTTGAATTCCTGAATTTTTGAATTTTCATTCTTAAATTTCTCTCATAAAAAATTCTCATCCCAAAAAAAGCTTTTTGAACCTTCAATTTCCATTTTCAGCATCGCTCATAAATCTCTCTGATTGACGAGAGTCTACCCGATCATTCCAATTTAGATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>302 273 148 130 49 40 26 19 13</canonical_bands>
                <polymorphic_bands>302 273 148 130 89 26 19 13</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAACTGACCATCTTGATTTA</pcr_primer_p1>
		<pcr_primer_p2>GTCCGAAAGAACAAAGACATT</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>CAAAACTGACCATCTTGATTTATGTTTCTTAAAAAAGCAATTTCCGTTTTTAAAGTAAAAGTCTAGATGATCCTAATTTTCTCGGTTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGGGGGGTTCGGCTTTTGGAAGGATTTTGGTCAGGTTTTTGTCAGAAGCTGCCCACTGACAGCAGTGGAACGGACAATGGTCAGATTTTGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGAAAGCTGGCCGGTAATTCGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGTTCTTTCGGAC</canonical_amplicon>
		<polymorphic_amplicon>CAAAACTGACCATCTTGATTTATGTTTCTTAAAAAAGCAATTTCCGTTTTTAAAGTAAAAGTMTAGATGATCCTAATTTTCTCGGTTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGGGGGGTTCGGCTTTTGGAAGGATTTTGGTCAGGTTTTTGTCAGAAGCTGCCCACTGACAGCAGTGGAACGGACAATGGTCAGATTTTGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGAAAGCTGGCCGGTAATTCGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGTTCTTTCGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17442</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>313990</contig_pos>
        <strand>+</strand>
        <context>CCTGTATGAT[A/C]AGAGAATAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATAGTTTTTCATTTTTCAAGCATCTTCGATTGTAAAAAACCTGTATGAT</left_flank>
        <right_flank>AGAGAATAAATTTTTGGATACACAACTTCTTTGAAATTTTGAAATTTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCATAGTATTGTCATTTTAAGATCAAGAATTTTGTTTTTGAAAAAAATTACATATTCGAAAATTGTAAACGGGCTCGTTAACTTTGACCCAATTTATCTCGGTTCCTATAAGAGTTATCAAAAAGTAATTAACTGGTAACCTATTGGTGATATTATGATAAACATTTTATCAGTTGATGTGTTTTTGATAGCTTTCACAGGCAACGAGATAAATTGACTCGAAGTTGAAGGCCAGGCATCACGATAAGCGACAATTTTTGGAAAGAGCATCTGAAAGATTCATTTTTCTGTAAACTACAAAATTTTTCAAATGCTCTTTATTATTTGTTTCCTAGAAATACGCTCTCACTCTCACTCTCACTCTCTATTTTCTTCATTTTTTGCGCTAAACAATTATAATGGATGCTTTCTCTCTCCCGCTATTTCCCTTTTCCGCAATTCTTTTTTTGATAGTTTTTCATTTTTCAAGCATCTTCGATTGTAAAAAACCTGTATGATAAGAGAATAAATTTTTGGATACACAACTTCTTTGAAATTTTGAAATTTTTGCATTTTTGAAGGTACAATTCCAAACGTTATCTGAATACATCGATTTTTTAAAGCGTTCACTGTGACCTAATTTATCTCGATTACTATAAGAGATATCAAAAAACGATCGACTGATAAAATATTGCTGATATTATGATCAATATTTTGTTAGTTGAACAATTTTTGATATTTTGTGCAGAAATCGAGATAAACTCGCTGAAAGTTGAGAAGTCGGCAGGCAACCAGTGCTGACTTTTTAAACTTTACTCAATTTATCTCGGTTCCGATAAGAAAAATCAAAAAGTGATCTACTAACAAAGTGTTAAAGGGGGCGTCCGCTAATTCCAAAAATTTTGAGGTTTTTATATCAATCGATCCAGAATTTTGGGTCGGGAATAAAACTCTCTTGGAGGATATCACTCCGAAAATCATTCGTTCTTAAGATATATGTCAAAAACAGGTCAAAAAAGT</canonical>
            <polymorphic>TGCATAGTATTGTCATTTTAAGATCAAGAATTTTGTTTTTGAAAAAAATTACATATTCGAAAATTGTAAACGGGCTCGTTAACTTTGACCCAATTTATCTCGGTTCCTATAAGAGTTATCAAAAAGTAATTAACTGGTAACCTATTGGTGATATTATGATAAACATTTTATCAGTTGATGTGTTTTTGATAGCTTTCACAGGCAACGAGATAAATTGACTCGAAGTTGAAGGCCAGGCATCACGATAAGCGACAATTTTTGGAAAGAGCATCTGAAAGATTCATTTTTCTGTAAACTACAAAATTTTTCAAATGCTCTTTATTATTTGTTTCCTAGAAATACGCTCTCACTCTCACTCTCACTCTCTATTTTCTTCATTTTTTGCGCTAAACAATTATAATGGATGCTTTCTCTCTCCCGCTATTTCCCTTTTCCGCAATTCTTTTTTTGATAGTTTTTCATTTTTCAAGCATCTTCGATTGTAAAAAACCTGTATGATMAGAGAATAAATTTTTGGATACACAACTTCTTTGAAATTTTGAAATTTTTGCATTTTTGAAGGTACAATTCCAAACGTTATCTGAATACATCGATTTTTTAAAGCGTTCACTGTGACCTAATTTATCTCGATTACTATAAGAGATATCAAAAAACGATCGACTGATAAAATATTGCTGATATTATGATCAATATTTTGTTAGTTGAACAATTTTTGATATTTTGTGCAGAAATCGAGATAAACTCGCTGAAAGTTGAGAAGTCGGCAGGCAACCAGTGCTGACTTTTTAAACTTTACTCAATTTATCTCGGTTCCGATAAGAAAAATCAAAAAGTGATCTACTAACAAAGTGTTAAAGGGGGCGTCCGCTAATTCCAAAAATTTTGAGGTTTTTATATCAATCGATCCAGAATTTTGGGTCGGGAATAAAACTCTCTTGGAGGATATCACTCCGAAAATCATTCGTTCTTAAGATATATGTCAAAAACAGGTCAAAAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGAAATACGCTCTCACTCTCA</pcr_primer_p1>
		<pcr_primer_p2>AGATAACGTTTGGAATTGTACCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAGAAATACGCTCTCACTCTCACTCTCACTCTCTATTTTCTTCATTTTTTGCGCTAAACAATTATAATGGATGCTTTCTCTCTCCCGCTATTTCCCTTTTCCGCAATTCTTTTTTTGATAGTTTTTCATTTTTCAAGCATCTTCGATTGTAAAAAACCTGTATGATAAGAGAATAAATTTTTGGATACACAACTTCTTTGAAATTTTGAAATTTTTGCATTTTTGAAGGTACAATTCCAAACGTTATCT</canonical_amplicon>
		<polymorphic_amplicon>CTAGAAATACGCTCTCACTCTCACTCTCACTCTCTATTTTCTTCATTTTTTGCGCTAAACAATTATAATGGATGCTTTCTCTCTCCCGCTATTTCCCTTTTCCGCAATTCTTTTTTTGATAGTTTTTCATTTTTCAAGCATCTTCGATTGTAAAAAACCTGTATGATMAGAGAATAAATTTTTGGATACACAACTTCTTTGAAATTTTGAAATTTTTGCATTTTTGAAGGTACAATTCCAAACGTTATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17443</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>313758</contig_pos>
        <strand>+</strand>
        <context>TTTGGAAAGA[G/T]CATCTGAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTCGAAGTTGAAGGCCAGGCATCACGATAAGCGACAATTTTTGGAAAGA</left_flank>
        <right_flank>CATCTGAAAGATTCATTTTTCTGTAAACTACAAAATTTTTCAAATGCTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTTATCTGGAGTTTATATTCCATTAGAAGTCACCAACATCGTTTGCTTCTTCTATATGCTTAAGAAATCCTGGGAAACGTATTTCGTCGTTATGGACCAACTATTCGAGTACACTGGATATGACGAATGGATTGATGAGAAGCTTGACTTCTTTTTCTTTTGATGATTTTTTTTTTGAAAATATTTTCTTGGTCCCTGATTTTAAATTTCAGCGCTTTTCGATCTCTTTTGCATAGTATTGTCATTTTAAGATCAAGAATTTTGTTTTTGAAAAAAATTACATATTCGAAAATTGTAAACGGGCTCGTTAACTTTGACCCAATTTATCTCGGTTCCTATAAGAGTTATCAAAAAGTAATTAACTGGTAACCTATTGGTGATATTATGATAAACATTTTATCAGTTGATGTGTTTTTGATAGCTTTCACAGGCAACGAGATAAATTGACTCGAAGTTGAAGGCCAGGCATCACGATAAGCGACAATTTTTGGAAAGAGCATCTGAAAGATTCATTTTTCTGTAAACTACAAAATTTTTCAAATGCTCTTTATTATTTGTTTCCTAGAAATACGCTCTCACTCTCACTCTCACTCTCTATTTTCTTCATTTTTTGCGCTAAACAATTATAATGGATGCTTTCTCTCTCCCGCTATTTCCCTTTTCCGCAATTCTTTTTTTGATAGTTTTTCATTTTTCAAGCATCTTCGATTGTAAAAAACCTGTATGATAAGAGAATAAATTTTTGGATACACAACTTCTTTGAAATTTTGAAATTTTTGCATTTTTGAAGGTACAATTCCAAACGTTATCTGAATACATCGATTTTTTAAAGCGTTCACTGTGACCTAATTTATCTCGATTACTATAAGAGATATCAAAAAACGATCGACTGATAAAATATTGCTGATATTATGATCAATATTTTGTTAGTTGAACAATTTTTGATATTTTGTGCAGAAATCGAGATAAACTCGCTGAAAGTTGAGAAGTCGGCAGG</canonical>
            <polymorphic>GATTTTATCTGGAGTTTATATTCCATTAGAAGTCACCAACATCGTTTGCTTCTTCTATATGCTTAAGAAATCCTGGGAAACGTATTTCGTCGTTATGGACCAACTATTCGAGTACACTGGATATGACGAATGGATTGATGAGAAGCTTGACTTCTTTTTCTTTTGATGATTTTTTTTTTGAAAATATTTTCTTGGTCCCTGATTTTAAATTTCAGCGCTTTTCGATCTCTTTTGCATAGTATTGTCATTTTAAGATCAAGAATTTTGTTTTTGAAAAAAATTACATATTCGAAAATTGTAAACGGGCTCGTTAACTTTGACCCAATTTATCTCGGTTCCTATAAGAGTTATCAAAAAGTAATTAACTGGTAACCTATTGGTGATATTATGATAAACATTTTATCAGTTGATGTGTTTTTGATAGCTTTCACAGGCAACGAGATAAATTGACTCGAAGTTGAAGGCCAGGCATCACGATAAGCGACAATTTTTGGAAAGAKCATCTGAAAGATTCATTTTTCTGTAAACTACAAAATTTTTCAAATGCTCTTTATTATTTGTTTCCTAGAAATACGCTCTCACTCTCACTCTCACTCTCTATTTTCTTCATTTTTTGCGCTAAACAATTATAATGGATGCTTTCTCTCTCCCGCTATTTCCCTTTTCCGCAATTCTTTTTTTGATAGTTTTTCATTTTTCAAGCATCTTCGATTGTAAAAAACCTGTATGATAAGAGAATAAATTTTTGGATACACAACTTCTTTGAAATTTTGAAATTTTTGCATTTTTGAAGGTACAATTCCAAACGTTATCTGAATACATCGATTTTTTAAAGCGTTCACTGTGACCTAATTTATCTCGATTACTATAAGAGATATCAAAAAACGATCGACTGATAAAATATTGCTGATATTATGATCAATATTTTGTTAGTTGAACAATTTTTGATATTTTGTGCAGAAATCGAGATAAACTCGCTGAAAGTTGAGAAGTCGGCAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATCAAGAATTTTGTTTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>AACAAATAATAAAGAGCATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>310</pcr_amplicon_size>
		<canonical_amplicon>AGATCAAGAATTTTGTTTTTGAAAAAAATTACATATTCGAAAATTGTAAACGGGCTCGTTAACTTTGACCCAATTTATCTCGGTTCCTATAAGAGTTATCAAAAAGTAATTAACTGGTAACCTATTGGTGATATTATGATAAACATTTTATCAGTTGATGTGTTTTTGATAGCTTTCACAGGCAACGAGATAAATTGACTCGAAGTTGAAGGCCAGGCATCACGATAAGCGACAATTTTTGGAAAGAGCATCTGAAAGATTCATTTTTCTGTAAACTACAAAATTTTTCAAATGCTCTTTATTATTTGTT</canonical_amplicon>
		<polymorphic_amplicon>AGATCAAGAATTTTGTTTTTGAAAAAAATTACATATTCGAAAATTGTAAACGGGCTCGTTAACTTTGACCCAATTTATCTCGGTTCCTATAAGAGTTATCAAAAAGTAATTAACTGGTAACCTATTGGTGATATTATGATAAACATTTTATCAGTTGATGTGTTTTTGATAGCTTTCACAGGCAACGAGATAAATTGACTCGAAGTTGAAGGCCAGGCATCACGATAAGCGACAATTTTTGGAAAGAKCATCTGAAAGATTCATTTTTCTGTAAACTACAAAATTTTTCAAATGCTCTTTATTATTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17444</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>52699</contig_pos>
        <strand>+</strand>
        <context>ATTACCATCA[A/G]ACTATAATCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAACAGAGAAGAGATGCAGATATTCAGACAGTTTCCTCAATTACCATCA</left_flank>
        <right_flank>ACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTGAAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCGGAAAGCCATAAGAAAAAGAAGAAAATTTTTGTTTAAAAAAGCAAAACTCATTCGAATGAAAACCTGAATTCAATAAATAATATTATGTATTACGACAATAATAATAATTAGATATGAAGTGTCAACGGAAAGGTGGGGCATGTGTGTGTTAGAAGGACACCTTTCTTATCTCAAAATCTATAGATGAGATTAATGGAGAAGAGGTTGTAAAACGGTAAGATCTTCACTAAATAGCTGAAATCAAATAACGAACGAGGTCAAGCACTTTACTCGTGAGTTTTTAAAAACATGCTTCGCCAAGGAATCTTTTTAAAGACACATATTCAGAAATTGAAACTTTAAGCAGTTGTTACTTTAAAAATCTCCTACAGACACCAAAAGTACATTTCCATTTCTCAGACGACGTAATAGATTTTGCCTATTTCACCGTAATCGTTGAGATACACGAACAGAGAAGAGATGCAGATATTCAGACAGTTTCCTCAATTACCATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTGAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGGCTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCCAAAAAAAAATATATTGAAATGCAATTATATCTGTACACATATATATTTATTTGGGGTAGTAGAAGAATAGAGAGAGTAACAGATGAAACAAGTGGATAATATGCGCATCTAGTACATACAATAATAACATGCCAAAAAAAAAGAAGTCGACTTCTTTTCCCCTCTTACTTGTAACTAACGCATCGAACCGGTAATGCTTATTCTATGGAGGAAATAAGAGACAAACAGAAGTTTTTAGAAAGACGGTAAGATGGATGGAATCATCCAGAATTTTTATTCTGCA</canonical>
            <polymorphic>CGCGGAAAGCCATAAGAAAAAGAAGAAAATTTTTGTTTAAAAAAGCAAAACTCATTCGAATGAAAACCTGAATTCAATAAATAATATTATGTATTACGACAATAATAATAATTAGATATGAAGTGTCAACGGAAAGGTGGGGCATGTGTGTGTTAGAAGGACACCTTTCTTATCTCAAAATCTATAGATGAGATTAATGGAGAAGAGGTTGTAAAACGGTAAGATCTTCACTAAATAGCTGAAATCAAATAACGAACGAGGTCAAGCACTTTACTCGTGAGTTTTTAAAAACATGCTTCGCCAAGGAATCTTTTTAAAGACACATATTCAGAAATTGAAACTTTAAGCAGTTGTTACTTTAAAAATCTCCTACAGACACCAAAAGTACATTTCCATTTCTCAGACGACGTAATAGATTTTGCCTATTTCACCGTAATCGTTGAGATACACGAACAGAGAAGAGATGCAGATATTCAGACAGTTTCCTCAATTACCATCARACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTGAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGGCTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCCAAAAAAAAATATATTGAAATGCAATTATATCTGTACACATATATATTTATTTGGGGTAGTAGAAGAATAGAGAGAGTAACAGATGAAACAAGTGGATAATATGCGCATCTAGTACATACAATAATAACATGCCAAAAAAAAAGAAGTCGACTTCTTTTCCCCTCTTACTTGTAACTAACGCATCGAACCGGTAATGCTTATTCTATGGAGGAAATAAGAGACAAACAGAAGTTTTTAGAAAGACGGTAAGATGGATGGAATCATCCAGAATTTTTATTCTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCAAAAGTACATTTCCATTTCT</pcr_primer_p1>
		<pcr_primer_p2>TGGATACAGTTCTCCCAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACCAAAAGTACATTTCCATTTCTCAGACGACGTAATAGATTTTGCCTATTTCACCGTAATCGTTGAGATACACGAACAGAGAAGAGATGCAGATATTCAGACAGTTTCCTCAATTACCATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTGAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCA</canonical_amplicon>
		<polymorphic_amplicon>ACCAAAAGTACATTTCCATTTCTCAGACGACGTAATAGATTTTGCCTATTTCACCGTAATCGTTGAGATACACGAACAGAGAAGAGATGCAGATATTCAGACAGTTTCCTCAATTACCATCARACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTGAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17445</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>52744</contig_pos>
        <strand>+</strand>
        <context>AGACAAGGTG[A/T]YAAAAAAARA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTG</left_flank>
        <right_flank>GAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAACTCATTCGAATGAAAACCTGAATTCAATAAATAATATTATGTATTACGACAATAATAATAATTAGATATGAAGTGTCAACGGAAAGGTGGGGCATGTGTGTGTTAGAAGGACACCTTTCTTATCTCAAAATCTATAGATGAGATTAATGGAGAAGAGGTTGTAAAACGGTAAGATCTTCACTAAATAGCTGAAATCAAATAACGAACGAGGTCAAGCACTTTACTCGTGAGTTTTTAAAAACATGCTTCGCCAAGGAATCTTTTTAAAGACACATATTCAGAAATTGAAACTTTAAGCAGTTGTTACTTTAAAAATCTCCTACAGACACCAAAAGTACATTTCCATTTCTCAGACGACGTAATAGATTTTGCCTATTTCACCGTAATCGTTGAGATACACGAACAGAGAAGAGATGCAGATATTCAGACAGTTTCCTCAATTACCATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTGAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGGCTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCCAAAAAAAAATATATTGAAATGCAATTATATCTGTACACATATATATTTATTTGGGGTAGTAGAAGAATAGAGAGAGTAACAGATGAAACAAGTGGATAATATGCGCATCTAGTACATACAATAATAACATGCCAAAAAAAAAGAAGTCGACTTCTTTTCCCCTCTTACTTGTAACTAACGCATCGAACCGGTAATGCTTATTCTATGGAGGAAATAAGAGACAAACAGAAGTTTTTAGAAAGACGGTAAGATGGATGGAATCATCCAGAATTTTTATTCTGCAAAACTTTCGAAATTTCATATGTCTGCATTCAGAAAATCATTCAAA</canonical>
            <polymorphic>CAAAACTCATTCGAATGAAAACCTGAATTCAATAAATAATATTATGTATTACGACAATAATAATAATTAGATATGAAGTGTCAACGGAAAGGTGGGGCATGTGTGTGTTAGAAGGACACCTTTCTTATCTCAAAATCTATAGATGAGATTAATGGAGAAGAGGTTGTAAAACGGTAAGATCTTCACTAAATAGCTGAAATCAAATAACGAACGAGGTCAAGCACTTTACTCGTGAGTTTTTAAAAACATGCTTCGCCAAGGAATCTTTTTAAAGACACATATTCAGAAATTGAAACTTTAAGCAGTTGTTACTTTAAAAATCTCCTACAGACACCAAAAGTACATTTCCATTTCTCAGACGACGTAATAGATTTTGCCTATTTCACCGTAATCGTTGAGATACACGAACAGAGAAGAGATGCAGATATTCAGACAGTTTCCTCAATTACCATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGWGAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGGCTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCCAAAAAAAAATATATTGAAATGCAATTATATCTGTACACATATATATTTATTTGGGGTAGTAGAAGAATAGAGAGAGTAACAGATGAAACAAGTGGATAATATGCGCATCTAGTACATACAATAATAACATGCCAAAAAAAAAGAAGTCGACTTCTTTTCCCCTCTTACTTGTAACTAACGCATCGAACCGGTAATGCTTATTCTATGGAGGAAATAAGAGACAAACAGAAGTTTTTAGAAAGACGGTAAGATGGATGGAATCATCCAGAATTTTTATTCTGCAAAACTTTCGAAATTTCATATGTCTGCATTCAGAAAATCATTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>234 95 93 80 77 67 57 56 52 43 38 38 19 14 11 11 9 2 2 2</canonical_bands>
                <polymorphic_bands>234 95 93 80 77 67 57 56 52 43 40 38 19 14 11 11 9 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATATTCAGACAGTTTCCTCAA</pcr_primer_p1>
		<pcr_primer_p2>GGAGTTGGTCTTTTTAACTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGATATTCAGACAGTTTCCTCAATTACCATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTGAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGGCTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCC</canonical_amplicon>
		<polymorphic_amplicon>AGATATTCAGACAGTTTCCTCAATTACCATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGWGAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGGCTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17446</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>52753</contig_pos>
        <strand></strand>
        <context>GWYAAAAAAA[A/G]ATTGAAAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTGAAAAAAA</left_flank>
        <right_flank>ATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTATAT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGAATGAAAACCTGAATTCAATAAATAATATTATGTATTACGACAATAATAATAATTAGATATGAAGTGTCAACGGAAAGGTGGGGCATGTGTGTGTTAGAAGGACACCTTTCTTATCTCAAAATCTATAGATGAGATTAATGGAGAAGAGGTTGTAAAACGGTAAGATCTTCACTAAATAGCTGAAATCAAATAACGAACGAGGTCAAGCACTTTACTCGTGAGTTTTTAAAAACATGCTTCGCCAAGGAATCTTTTTAAAGACACATATTCAGAAATTGAAACTTTAAGCAGTTGTTACTTTAAAAATCTCCTACAGACACCAAAAGTACATTTCCATTTCTCAGACGACGTAATAGATTTTGCCTATTTCACCGTAATCGTTGAGATACACGAACAGAGAAGAGATGCAGATATTCAGACAGTTTCCTCAATTACCATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTGAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGGCTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCCAAAAAAAAATATATTGAAATGCAATTATATCTGTACACATATATATTTATTTGGGGTAGTAGAAGAATAGAGAGAGTAACAGATGAAACAAGTGGATAATATGCGCATCTAGTACATACAATAATAACATGCCAAAAAAAAAGAAGTCGACTTCTTTTCCCCTCTTACTTGTAACTAACGCATCGAACCGGTAATGCTTATTCTATGGAGGAAATAAGAGACAAACAGAAGTTTTTAGAAAGACGGTAAGATGGATGGAATCATCCAGAATTTTTATTCTGCAAAACTTTCGAAATTTCATATGTCTGCATTCAGAAAATCATTCAAATATCCGACT</canonical>
            <polymorphic>TTCGAATGAAAACCTGAATTCAATAAATAATATTATGTATTACGACAATAATAATAATTAGATATGAAGTGTCAACGGAAAGGTGGGGCATGTGTGTGTTAGAAGGACACCTTTCTTATCTCAAAATCTATAGATGAGATTAATGGAGAAGAGGTTGTAAAACGGTAAGATCTTCACTAAATAGCTGAAATCAAATAACGAACGAGGTCAAGCACTTTACTCGTGAGTTTTTAAAAACATGCTTCGCCAAGGAATCTTTTTAAAGACACATATTCAGAAATTGAAACTTTAAGCAGTTGTTACTTTAAAAATCTCCTACAGACACCAAAAGTACATTTCCATTTCTCAGACGACGTAATAGATTTTGCCTATTTCACCGTAATCGTTGAGATACACGAACAGAGAAGAGATGCAGATATTCAGACAGTTTCCTCAATTACCATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTGAAAAAAARATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGGCTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCCAAAAAAAAATATATTGAAATGCAATTATATCTGTACACATATATATTTATTTGGGGTAGTAGAAGAATAGAGAGAGTAACAGATGAAACAAGTGGATAATATGCGCATCTAGTACATACAATAATAACATGCCAAAAAAAAAGAAGTCGACTTCTTTTCCCCTCTTACTTGTAACTAACGCATCGAACCGGTAATGCTTATTCTATGGAGGAAATAAGAGACAAACAGAAGTTTTTAGAAAGACGGTAAGATGGATGGAATCATCCAGAATTTTTATTCTGCAAAACTTTCGAAATTTCATATGTCTGCATTCAGAAAATCATTCAAATATCCGACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>246 223 186 156 65 44 39 25 16</canonical_bands>
                <polymorphic_bands>251 246 223 156 44 39 25 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATATTCAGACAGTTTCCTCAA</pcr_primer_p1>
		<pcr_primer_p2>GGAGTTGGTCTTTTTAACTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGATATTCAGACAGTTTCCTCAATTACCATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTGAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGGCTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCC</canonical_amplicon>
		<polymorphic_amplicon>AGATATTCAGACAGTTTCCTCAATTACCATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTGAAAAAAARATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGGCTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17447</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>52782</contig_pos>
        <strand></strand>
        <context>CTTTATTTTT[C/T]ACGAAAAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAGACAAGGTGTGAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTT</left_flank>
        <right_flank>ACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCAGAATGCGCAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATTATGTATTACGACAATAATAATAATTAGATATGAAGTGTCAACGGAAAGGTGGGGCATGTGTGTGTTAGAAGGACACCTTTCTTATCTCAAAATCTATAGATGAGATTAATGGAGAAGAGGTTGTAAAACGGTAAGATCTTCACTAAATAGCTGAAATCAAATAACGAACGAGGTCAAGCACTTTACTCGTGAGTTTTTAAAAACATGCTTCGCCAAGGAATCTTTTTAAAGACACATATTCAGAAATTGAAACTTTAAGCAGTTGTTACTTTAAAAATCTCCTACAGACACCAAAAGTACATTTCCATTTCTCAGACGACGTAATAGATTTTGCCTATTTCACCGTAATCGTTGAGATACACGAACAGAGAAGAGATGCAGATATTCAGACAGTTTCCTCAATTACCATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTGAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGGCTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCCAAAAAAAAATATATTGAAATGCAATTATATCTGTACACATATATATTTATTTGGGGTAGTAGAAGAATAGAGAGAGTAACAGATGAAACAAGTGGATAATATGCGCATCTAGTACATACAATAATAACATGCCAAAAAAAAAGAAGTCGACTTCTTTTCCCCTCTTACTTGTAACTAACGCATCGAACCGGTAATGCTTATTCTATGGAGGAAATAAGAGACAAACAGAAGTTTTTAGAAAGACGGTAAGATGGATGGAATCATCCAGAATTTTTATTCTGCAAAACTTTCGAAATTTCATATGTCTGCATTCAGAAAATCATTCAAATATCCGACTAGTAAGTCTAGTTCTCATAGTGAGCAGTA</canonical>
            <polymorphic>ATATTATGTATTACGACAATAATAATAATTAGATATGAAGTGTCAACGGAAAGGTGGGGCATGTGTGTGTTAGAAGGACACCTTTCTTATCTCAAAATCTATAGATGAGATTAATGGAGAAGAGGTTGTAAAACGGTAAGATCTTCACTAAATAGCTGAAATCAAATAACGAACGAGGTCAAGCACTTTACTCGTGAGTTTTTAAAAACATGCTTCGCCAAGGAATCTTTTTAAAGACACATATTCAGAAATTGAAACTTTAAGCAGTTGTTACTTTAAAAATCTCCTACAGACACCAAAAGTACATTTCCATTTCTCAGACGACGTAATAGATTTTGCCTATTTCACCGTAATCGTTGAGATACACGAACAGAGAAGAGATGCAGATATTCAGACAGTTTCCTCAATTACCATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTGAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTYACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGGCTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCCAAAAAAAAATATATTGAAATGCAATTATATCTGTACACATATATATTTATTTGGGGTAGTAGAAGAATAGAGAGAGTAACAGATGAAACAAGTGGATAATATGCGCATCTAGTACATACAATAATAACATGCCAAAAAAAAAGAAGTCGACTTCTTTTCCCCTCTTACTTGTAACTAACGCATCGAACCGGTAATGCTTATTCTATGGAGGAAATAAGAGACAAACAGAAGTTTTTAGAAAGACGGTAAGATGGATGGAATCATCCAGAATTTTTATTCTGCAAAACTTTCGAAATTTCATATGTCTGCATTCAGAAAATCATTCAAATATCCGACTAGTAAGTCTAGTTCTCATAGTGAGCAGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>265 95 93 77 67 57 56 52 43 42 38 38 19 14 11 11 9 7 2 2 2</canonical_bands>
                <polymorphic_bands>265 115 95 93 67 57 56 52 43 42 38 19 14 11 11 9 7 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>361 307 193 101 38</canonical_bands>
                <polymorphic_bands>361 345 193 101</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATATTCAGACAGTTTCCTCAA</pcr_primer_p1>
		<pcr_primer_p2>GGAGTTGGTCTTTTTAACTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGATATTCAGACAGTTTCCTCAATTACCATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTGAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGGCTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCC</canonical_amplicon>
		<polymorphic_amplicon>AGATATTCAGACAGTTTCCTCAATTACCATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTGAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTYACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGGCTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17448</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>52800</contig_pos>
        <strand>+</strand>
        <context>ATATTCCAGT[A/G]TATTTTGGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGT</left_flank>
        <right_flank>TATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGGCTACTAAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAATAATAATTAGATATGAAGTGTCAACGGAAAGGTGGGGCATGTGTGTGTTAGAAGGACACCTTTCTTATCTCAAAATCTATAGATGAGATTAATGGAGAAGAGGTTGTAAAACGGTAAGATCTTCACTAAATAGCTGAAATCAAATAACGAACGAGGTCAAGCACTTTACTCGTGAGTTTTTAAAAACATGCTTCGCCAAGGAATCTTTTTAAAGACACATATTCAGAAATTGAAACTTTAAGCAGTTGTTACTTTAAAAATCTCCTACAGACACCAAAAGTACATTTCCATTTCTCAGACGACGTAATAGATTTTGCCTATTTCACCGTAATCGTTGAGATACACGAACAGAGAAGAGATGCAGATATTCAGACAGTTTCCTCAATTACCATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTGAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGGCTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCCAAAAAAAAATATATTGAAATGCAATTATATCTGTACACATATATATTTATTTGGGGTAGTAGAAGAATAGAGAGAGTAACAGATGAAACAAGTGGATAATATGCGCATCTAGTACATACAATAATAACATGCCAAAAAAAAAGAAGTCGACTTCTTTTCCCCTCTTACTTGTAACTAACGCATCGAACCGGTAATGCTTATTCTATGGAGGAAATAAGAGACAAACAGAAGTTTTTAGAAAGACGGTAAGATGGATGGAATCATCCAGAATTTTTATTCTGCAAAACTTTCGAAATTTCATATGTCTGCATTCAGAAAATCATTCAAATATCCGACTAGTAAGTCTAGTTCTCATAGTGAGCAGTAAGATAAAAACAATCCTAG</canonical>
            <polymorphic>ATAATAATAATTAGATATGAAGTGTCAACGGAAAGGTGGGGCATGTGTGTGTTAGAAGGACACCTTTCTTATCTCAAAATCTATAGATGAGATTAATGGAGAAGAGGTTGTAAAACGGTAAGATCTTCACTAAATAGCTGAAATCAAATAACGAACGAGGTCAAGCACTTTACTCGTGAGTTTTTAAAAACATGCTTCGCCAAGGAATCTTTTTAAAGACACATATTCAGAAATTGAAACTTTAAGCAGTTGTTACTTTAAAAATCTCCTACAGACACCAAAAGTACATTTCCATTTCTCAGACGACGTAATAGATTTTGCCTATTTCACCGTAATCGTTGAGATACACGAACAGAGAAGAGATGCAGATATTCAGACAGTTTCCTCAATTACCATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTGAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTRTATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGGCTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCCAAAAAAAAATATATTGAAATGCAATTATATCTGTACACATATATATTTATTTGGGGTAGTAGAAGAATAGAGAGAGTAACAGATGAAACAAGTGGATAATATGCGCATCTAGTACATACAATAATAACATGCCAAAAAAAAAGAAGTCGACTTCTTTTCCCCTCTTACTTGTAACTAACGCATCGAACCGGTAATGCTTATTCTATGGAGGAAATAAGAGACAAACAGAAGTTTTTAGAAAGACGGTAAGATGGATGGAATCATCCAGAATTTTTATTCTGCAAAACTTTCGAAATTTCATATGTCTGCATTCAGAAAATCATTCAAATATCCGACTAGTAAGTCTAGTTCTCATAGTGAGCAGTAAGATAAAAACAATCCTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATATTCAGACAGTTTCCTCAA</pcr_primer_p1>
		<pcr_primer_p2>GGAGTTGGTCTTTTTAACTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGATATTCAGACAGTTTCCTCAATTACCATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTGAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGGCTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCC</canonical_amplicon>
		<polymorphic_amplicon>AGATATTCAGACAGTTTCCTCAATTACCATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTGAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTRTATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGGCTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17449</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>52841</contig_pos>
        <strand>+</strand>
        <context>AGAAGGATCG[A/G]CTACTAAATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTCCAGTATATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCG</left_flank>
        <right_flank>CTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGTGTGTGTTAGAAGGACACCTTTCTTATCTCAAAATCTATAGATGAGATTAATGGAGAAGAGGTTGTAAAACGGTAAGATCTTCACTAAATAGCTGAAATCAAATAACGAACGAGGTCAAGCACTTTACTCGTGAGTTTTTAAAAACATGCTTCGCCAAGGAATCTTTTTAAAGACACATATTCAGAAATTGAAACTTTAAGCAGTTGTTACTTTAAAAATCTCCTACAGACACCAAAAGTACATTTCCATTTCTCAGACGACGTAATAGATTTTGCCTATTTCACCGTAATCGTTGAGATACACGAACAGAGAAGAGATGCAGATATTCAGACAGTTTCCTCAATTACCATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTGAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGGCTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCCAAAAAAAAATATATTGAAATGCAATTATATCTGTACACATATATATTTATTTGGGGTAGTAGAAGAATAGAGAGAGTAACAGATGAAACAAGTGGATAATATGCGCATCTAGTACATACAATAATAACATGCCAAAAAAAAAGAAGTCGACTTCTTTTCCCCTCTTACTTGTAACTAACGCATCGAACCGGTAATGCTTATTCTATGGAGGAAATAAGAGACAAACAGAAGTTTTTAGAAAGACGGTAAGATGGATGGAATCATCCAGAATTTTTATTCTGCAAAACTTTCGAAATTTCATATGTCTGCATTCAGAAAATCATTCAAATATCCGACTAGTAAGTCTAGTTCTCATAGTGAGCAGTAAGATAAAAACAATCCTAGTTTTGTTCAGAAGATAATTCAAAAAGAATCCAACACATACA</canonical>
            <polymorphic>CATGTGTGTGTTAGAAGGACACCTTTCTTATCTCAAAATCTATAGATGAGATTAATGGAGAAGAGGTTGTAAAACGGTAAGATCTTCACTAAATAGCTGAAATCAAATAACGAACGAGGTCAAGCACTTTACTCGTGAGTTTTTAAAAACATGCTTCGCCAAGGAATCTTTTTAAAGACACATATTCAGAAATTGAAACTTTAAGCAGTTGTTACTTTAAAAATCTCCTACAGACACCAAAAGTACATTTCCATTTCTCAGACGACGTAATAGATTTTGCCTATTTCACCGTAATCGTTGAGATACACGAACAGAGAAGAGATGCAGATATTCAGACAGTTTCCTCAATTACCATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTGAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGRCTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCCAAAAAAAAATATATTGAAATGCAATTATATCTGTACACATATATATTTATTTGGGGTAGTAGAAGAATAGAGAGAGTAACAGATGAAACAAGTGGATAATATGCGCATCTAGTACATACAATAATAACATGCCAAAAAAAAAGAAGTCGACTTCTTTTCCCCTCTTACTTGTAACTAACGCATCGAACCGGTAATGCTTATTCTATGGAGGAAATAAGAGACAAACAGAAGTTTTTAGAAAGACGGTAAGATGGATGGAATCATCCAGAATTTTTATTCTGCAAAACTTTCGAAATTTCATATGTCTGCATTCAGAAAATCATTCAAATATCCGACTAGTAAGTCTAGTTCTCATAGTGAGCAGTAAGATAAAAACAATCCTAGTTTTGTTCAGAAGATAATTCAAAAAGAATCCAACACATACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>500 292 112 96</canonical_bands>
                <polymorphic_bands>612 292 96</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATATTCAGACAGTTTCCTCAA</pcr_primer_p1>
		<pcr_primer_p2>GGAGTTGGTCTTTTTAACTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGATATTCAGACAGTTTCCTCAATTACCATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTGAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGGCTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCC</canonical_amplicon>
		<polymorphic_amplicon>AGATATTCAGACAGTTTCCTCAATTACCATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTGAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGRCTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17451</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>53120</contig_pos>
        <strand>+</strand>
        <context>ATGCTTATTC[A/T]ATGGAGGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTTTCCCCTCTTACTTGTAACTAACGCATCGAACCGGTAATGCTTATTC</left_flank>
        <right_flank>ATGGAGGAAATAAGAGACAAACAGAAGTTTTTAGAAAGACGGTAAGATGG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTATTTCACCGTAATCGTTGAGATACACGAACAGAGAAGAGATGCAGATATTCAGACAGTTTCCTCAATTACCATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTGAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGGCTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCCAAAAAAAAATATATTGAAATGCAATTATATCTGTACACATATATATTTATTTGGGGTAGTAGAAGAATAGAGAGAGTAACAGATGAAACAAGTGGATAATATGCGCATCTAGTACATACAATAATAACATGCCAAAAAAAAAGAAGTCGACTTCTTTTCCCCTCTTACTTGTAACTAACGCATCGAACCGGTAATGCTTATTCTATGGAGGAAATAAGAGACAAACAGAAGTTTTTAGAAAGACGGTAAGATGGATGGAATCATCCAGAATTTTTATTCTGCAAAACTTTCGAAATTTCATATGTCTGCATTCAGAAAATCATTCAAATATCCGACTAGTAAGTCTAGTTCTCATAGTGAGCAGTAAGATAAAAACAATCCTAGTTTTGTTCAGAAGATAATTCAAAAAGAATCCAACACATACAATGGTTGACCATGTAGATAGTTCTTATAATATTTTCAAGTCTATTTCTCCGGGGTATTGAAAATCAAGTTATTACTGTTTCTAAGGAATCGTGGTGGCGTCGGCGCATGATGATCCCTCTGGTACATAATTGACGACACGCTAAGCAAACAGACAAATTCTAAAGTTTAGACTGTCGATTGAGATGAATATTAGTTCTGCATTCACAGGAATATTCTAGAAAATCAATGCTTCTCATAGGATTTTGAAACATTTTAGTGCTGACCAGGATTCTAAGTCA</canonical>
            <polymorphic>CCTATTTCACCGTAATCGTTGAGATACACGAACAGAGAAGAGATGCAGATATTCAGACAGTTTCCTCAATTACCATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTGAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGGCTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCCAAAAAAAAATATATTGAAATGCAATTATATCTGTACACATATATATTTATTTGGGGTAGTAGAAGAATAGAGAGAGTAACAGATGAAACAAGTGGATAATATGCGCATCTAGTACATACAATAATAACATGCCAAAAAAAAAGAAGTCGACTTCTTTTCCCCTCTTACTTGTAACTAACGCATCGAACCGGTAATGCTTATTCWATGGAGGAAATAAGAGACAAACAGAAGTTTTTAGAAAGACGGTAAGATGGATGGAATCATCCAGAATTTTTATTCTGCAAAACTTTCGAAATTTCATATGTCTGCATTCAGAAAATCATTCAAATATCCGACTAGTAAGTCTAGTTCTCATAGTGAGCAGTAAGATAAAAACAATCCTAGTTTTGTTCAGAAGATAATTCAAAAAGAATCCAACACATACAATGGTTGACCATGTAGATAGTTCTTATAATATTTTCAAGTCTATTTCTCCGGGGTATTGAAAATCAAGTTATTACTGTTTCTAAGGAATCGTGGTGGCGTCGGCGCATGATGATCCCTCTGGTACATAATTGACGACACGCTAAGCAAACAGACAAATTCTAAAGTTTAGACTGTCGATTGAGATGAATATTAGTTCTGCATTCACAGGAATATTCTAGAAAATCAATGCTTCTCATAGGATTTTGAAACATTTTAGTGCTGACCAGGATTCTAAGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGTAACAGATGAAACAAGTGG</pcr_primer_p1>
		<pcr_primer_p2>TTTCTGAATGCAGACATATGAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAGTAACAGATGAAACAAGTGGATAATATGCGCATCTAGTACATACAATAATAACATGCCAAAAAAAAAGAAGTCGACTTCTTTTCCCCTCTTACTTGTAACTAACGCATCGAACCGGTAATGCTTATTCTATGGAGGAAATAAGAGACAAACAGAAGTTTTTAGAAAGACGGTAAGATGGATGGAATCATCCAGAATTTTTATTCTGCAAAACTTTCGAAATTTCATATGTCTGCATTCAGAAA</canonical_amplicon>
		<polymorphic_amplicon>AGAGTAACAGATGAAACAAGTGGATAATATGCGCATCTAGTACATACAATAATAACATGCCAAAAAAAAAGAAGTCGACTTCTTTTCCCCTCTTACTTGTAACTAACGCATCGAACCGGTAATGCTTATTCWATGGAGGAAATAAGAGACAAACAGAAGTTTTTAGAAAGACGGTAAGATGGATGGAATCATCCAGAATTTTTATTCTGCAAAACTTTCGAAATTTCATATGTCTGCATTCAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17452</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>53144</contig_pos>
        <strand>+</strand>
        <context>GAGACAAACA[A/G]AAGTTTTTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGCATCGAACCGGTAATGCTTATTCTATGGAGGAAATAAGAGACAAACA</left_flank>
        <right_flank>AAGTTTTTAGAAAGACGGTAAGATGGATGGAATCATCCAGAATTTTTATT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACACGAACAGAGAAGAGATGCAGATATTCAGACAGTTTCCTCAATTACCATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTGAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGGCTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCCAAAAAAAAATATATTGAAATGCAATTATATCTGTACACATATATATTTATTTGGGGTAGTAGAAGAATAGAGAGAGTAACAGATGAAACAAGTGGATAATATGCGCATCTAGTACATACAATAATAACATGCCAAAAAAAAAGAAGTCGACTTCTTTTCCCCTCTTACTTGTAACTAACGCATCGAACCGGTAATGCTTATTCTATGGAGGAAATAAGAGACAAACAGAAGTTTTTAGAAAGACGGTAAGATGGATGGAATCATCCAGAATTTTTATTCTGCAAAACTTTCGAAATTTCATATGTCTGCATTCAGAAAATCATTCAAATATCCGACTAGTAAGTCTAGTTCTCATAGTGAGCAGTAAGATAAAAACAATCCTAGTTTTGTTCAGAAGATAATTCAAAAAGAATCCAACACATACAATGGTTGACCATGTAGATAGTTCTTATAATATTTTCAAGTCTATTTCTCCGGGGTATTGAAAATCAAGTTATTACTGTTTCTAAGGAATCGTGGTGGCGTCGGCGCATGATGATCCCTCTGGTACATAATTGACGACACGCTAAGCAAACAGACAAATTCTAAAGTTTAGACTGTCGATTGAGATGAATATTAGTTCTGCATTCACAGGAATATTCTAGAAAATCAATGCTTCTCATAGGATTTTGAAACATTTTAGTGCTGACCAGGATTCTAAGTCAAAATTACAATTTCAGTGGAAAATG</canonical>
            <polymorphic>TACACGAACAGAGAAGAGATGCAGATATTCAGACAGTTTCCTCAATTACCATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTGAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGGCTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCCAAAAAAAAATATATTGAAATGCAATTATATCTGTACACATATATATTTATTTGGGGTAGTAGAAGAATAGAGAGAGTAACAGATGAAACAAGTGGATAATATGCGCATCTAGTACATACAATAATAACATGCCAAAAAAAAAGAAGTCGACTTCTTTTCCCCTCTTACTTGTAACTAACGCATCGAACCGGTAATGCTTATTCTATGGAGGAAATAAGAGACAAACARAAGTTTTTAGAAAGACGGTAAGATGGATGGAATCATCCAGAATTTTTATTCTGCAAAACTTTCGAAATTTCATATGTCTGCATTCAGAAAATCATTCAAATATCCGACTAGTAAGTCTAGTTCTCATAGTGAGCAGTAAGATAAAAACAATCCTAGTTTTGTTCAGAAGATAATTCAAAAAGAATCCAACACATACAATGGTTGACCATGTAGATAGTTCTTATAATATTTTCAAGTCTATTTCTCCGGGGTATTGAAAATCAAGTTATTACTGTTTCTAAGGAATCGTGGTGGCGTCGGCGCATGATGATCCCTCTGGTACATAATTGACGACACGCTAAGCAAACAGACAAATTCTAAAGTTTAGACTGTCGATTGAGATGAATATTAGTTCTGCATTCACAGGAATATTCTAGAAAATCAATGCTTCTCATAGGATTTTGAAACATTTTAGTGCTGACCAGGATTCTAAGTCAAAATTACAATTTCAGTGGAAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTCCCCTCTTACTTGTAACT</pcr_primer_p1>
		<pcr_primer_p2>AATTATCTTCTGAACAAAACTAGGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTTCCCCTCTTACTTGTAACTAACGCATCGAACCGGTAATGCTTATTCTATGGAGGAAATAAGAGACAAACAGAAGTTTTTAGAAAGACGGTAAGATGGATGGAATCATCCAGAATTTTTATTCTGCAAAACTTTCGAAATTTCATATGTCTGCATTCAGAAAATCATTCAAATATCCGACTAGTAAGTCTAGTTCTCATAGTGAGCAGTAAGATAAAAACAATCCTAGTTTTGTTCAGAAGATAATT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTCCCCTCTTACTTGTAACTAACGCATCGAACCGGTAATGCTTATTCTATGGAGGAAATAAGAGACAAACARAAGTTTTTAGAAAGACGGTAAGATGGATGGAATCATCCAGAATTTTTATTCTGCAAAACTTTCGAAATTTCATATGTCTGCATTCAGAAAATCATTCAAATATCCGACTAGTAAGTCTAGTTCTCATAGTGAGCAGTAAGATAAAAACAATCCTAGTTTTGTTCAGAAGATAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17453</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>54540</contig_pos>
        <strand>+</strand>
        <context>CGGTATGTAT[G/T]TTTGTATCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAGTCAAAAAACATCTATACTTCTTACCATGGAAAGTTCCCGGTATGTAT</left_flank>
        <right_flank>TTTGTATCTTTGATAGGACAGTTATAAAGTTGAGAATCGACCATTTCAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTCGATTGTTCCATCAGACAAACTCGGTGTCCACAATACAAATTGAAATTTAGTTTAAAAAAATTACAAAACTAATGAGAAAACTGTAACGTTTGAATCAAAAAGACTAAAATTGAAGAAAATTAAAAAGTACTAGATTGCAAAGAAACTTCAGAGAAAAAATAAGAGTCGGTCGTCACAATGAAAGCGGTGTTTATTGGAAAATGAGAAATGTGGTGAAAACTGCAGTAATCCTTGGTTTTGGCGTACGGTTAATCTTCCGCGCGGAAGGTAACCCCCGCAGAGCAATATGAAAAGTTACCGGTCGTAATCGGTTGACAGAAGGGCAAATACAAATATATGCGCCTTCTCTTACTACTGTTTGTCTGTGAAAGAGCAATTCAGAAACTTTGGTGAGACTGGTAAAAAATGAAATGTCAATTTGAATTTGACAGGTGGCGAACAACTAGTCAAAAAACATCTATACTTCTTACCATGGAAAGTTCCCGGTATGTATTTTTGTATCTTTGATAGGACAGTTATAAAGTTGAGAATCGACCATTTCAAAAATATGCTTCAACTGAATAAAATTTGTTAAACAAACTACCCAGATACGAATTAAAAAATATCAGATTCCTGAAAGTCTAGAATACTAATTGGTGAATGTCGATATAATATAACGTATCGAGAAGCGAGCACATACTATCTTTCTAAAGAAACGCCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTCTGTTATTTTGTTTTCCGATTAAACACAAGAATTAAAAAAAATAGAGGAACTGAACCACAAAGCGGCTTTTCCCGTTTTGGTGTGCTCTTGACCCAACGCAGCGAAAAGTTCCAATTTTGGAGAAGCTTCTGTTTAGATGCGGGATGAGAGAGGGAGAAAGAAAGTGGGAGTATATAAATAAATACTTTTGTGATGAGAAATGTTAGAGAAA</canonical>
            <polymorphic>TTCTTCGATTGTTCCATCAGACAAACTCGGTGTCCACAATACAAATTGAAATTTAGTTTAAAAAAATTACAAAACTAATGAGAAAACTGTAACGTTTGAATCAAAAAGACTAAAATTGAAGAAAATTAAAAAGTACTAGATTGCAAAGAAACTTCAGAGAAAAAATAAGAGTCGGTCGTCACAATGAAAGCGGTGTTTATTGGAAAATGAGAAATGTGGTGAAAACTGCAGTAATCCTTGGTTTTGGCGTACGGTTAATCTTCCGCGCGGAAGGTAACCCCCGCAGAGCAATATGAAAAGTTACCGGTCGTAATCGGTTGACAGAAGGGCAAATACAAATATATGCGCCTTCTCTTACTACTGTTTGTCTGTGAAAGAGCAATTCAGAAACTTTGGTGAGACTGGTAAAAAATGAAATGTCAATTTGAATTTGACAGGTGGCGAACAACTAGTCAAAAAACATCTATACTTCTTACCATGGAAAGTTCCCGGTATGTATKTTTGTATCTTTGATAGGACAGTTATAAAGTTGAGAATCGACCATTTCAAAAATATGCTTCAACTGAATAAAATTTGTTAAACAAACTACCCAGATACGAATTAAAAAATATCAGATTCCTGAAAGTCTAGAATACTAATTGGTGAATGTCGATATAATATAACGTATCGAGAAGCGAGCACATACTATCTTTCTAAAGAAACGCCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTCTGTTATTTTGTTTTCCGATTAAACACAAGAATTAAAAAAAATAGAGGAACTGAACCACAAAGCGGCTTTTCCCGTTTTGGTGTGCTCTTGACCCAACGCAGCGAAAAGTTCCAATTTTGGAGAAGCTTCTGTTTAGATGCGGGATGAGAGAGGGAGAAAGAAAGTGGGAGTATATAAATAAATACTTTTGTGATGAGAAATGTTAGAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTACTGTTTGTCTGTGAAAGAGC</pcr_primer_p1>
		<pcr_primer_p2>TAATTCGTATCTGGGTAGTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTACTGTTTGTCTGTGAAAGAGCAATTCAGAAACTTTGGTGAGACTGGTAAAAAATGAAATGTCAATTTGAATTTGACAGGTGGCGAACAACTAGTCAAAAAACATCTATACTTCTTACCATGGAAAGTTCCCGGTATGTATTTTTGTATCTTTGATAGGACAGTTATAAAGTTGAGAATCGACCATTTCAAAAATATGCTTCAACTGAATAAAATTTGTTAAACAAACTACCCAGATACGAATTA</canonical_amplicon>
		<polymorphic_amplicon>CTACTGTTTGTCTGTGAAAGAGCAATTCAGAAACTTTGGTGAGACTGGTAAAAAATGAAATGTCAATTTGAATTTGACAGGTGGCGAACAACTAGTCAAAAAACATCTATACTTCTTACCATGGAAAGTTCCCGGTATGTATKTTTGTATCTTTGATAGGACAGTTATAAAGTTGAGAATCGACCATTTCAAAAATATGCTTCAACTGAATAAAATTTGTTAAACAAACTACCCAGATACGAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17454</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>55102</contig_pos>
        <strand>+</strand>
        <context>TATCAAAACA[A/G]TCAGTAAGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACAATCGACAAAAGAGTGCTCTCTCGAGAATTCATTTGATATCAAAACA</left_flank>
        <right_flank>TCAGTAAGTGATACCTTCTGAATTTATACGGTCTTTCTATAGTTCACAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAATAAAATTTGTTAAACAAACTACCCAGATACGAATTAAAAAATATCAGATTCCTGAAAGTCTAGAATACTAATTGGTGAATGTCGATATAATATAACGTATCGAGAAGCGAGCACATACTATCTTTCTAAAGAAACGCCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTCTGTTATTTTGTTTTCCGATTAAACACAAGAATTAAAAAAAATAGAGGAACTGAACCACAAAGCGGCTTTTCCCGTTTTGGTGTGCTCTTGACCCAACGCAGCGAAAAGTTCCAATTTTGGAGAAGCTTCTGTTTAGATGCGGGATGAGAGAGGGAGAAAGAAAGTGGGAGTATATAAATAAATACTTTTGTGATGAGAAATGTTAGAGAAATAGCAATTGTAAACAATCGACAAAAGAGTGCTCTCTCGAGAATTCATTTGATATCAAAACAATCAGTAAGTGATACCTTCTGAATTTATACGGTCTTTCTATAGTTCACAAACAAAAGTCAACAGAAGTTTGAATGTTGAAAACCAGTCCCGGAAAACTTCGTAAACTCATCCAGACAGTGAGAAAGTTTCTGAACCTCAAATCGGTATGACCTAGATTTGACCCAAATTACATAATCACGAATTTATCTTCTTTGAAATGAAAGTAACTTCAAAACGCAAAGAAAATAGAAAAATTAAATATGACACAAAAATACACTTTCAAGACCTAAAAACAGAGATTTCAGTAAAACACTGTCTCTAACAGTAGAAAAACGAACGTTAGATTCAATTCTGATCTTCCTTGAAAAAGTTTGGTTTGGTAGGTCTGGAGCGCAATTTTCGCATTTTTAAAAATTTAATTTTGTAAAAATTCAAGAGGATTCAGATTGAGTTTTGAAAAAAGGTCTATTTTCAGCATACTTGCGGAAAAGACGGCCGGGCCGAGTTTTTTTTGAAAACGG</canonical>
            <polymorphic>CTGAATAAAATTTGTTAAACAAACTACCCAGATACGAATTAAAAAATATCAGATTCCTGAAAGTCTAGAATACTAATTGGTGAATGTCGATATAATATAACGTATCGAGAAGCGAGCACATACTATCTTTCTAAAGAAACGCCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTCTGTTATTTTGTTTTCCGATTAAACACAAGAATTAAAAAAAATAGAGGAACTGAACCACAAAGCGGCTTTTCCCGTTTTGGTGTGCTCTTGACCCAACGCAGCGAAAAGTTCCAATTTTGGAGAAGCTTCTGTTTAGATGCGGGATGAGAGAGGGAGAAAGAAAGTGGGAGTATATAAATAAATACTTTTGTGATGAGAAATGTTAGAGAAATAGCAATTGTAAACAATCGACAAAAGAGTGCTCTCTCGAGAATTCATTTGATATCAAAACARTCAGTAAGTGATACCTTCTGAATTTATACGGTCTTTCTATAGTTCACAAACAAAAGTCAACAGAAGTTTGAATGTTGAAAACCAGTCCCGGAAAACTTCGTAAACTCATCCAGACAGTGAGAAAGTTTCTGAACCTCAAATCGGTATGACCTAGATTTGACCCAAATTACATAATCACGAATTTATCTTCTTTGAAATGAAAGTAACTTCAAAACGCAAAGAAAATAGAAAAATTAAATATGACACAAAAATACACTTTCAAGACCTAAAAACAGAGATTTCAGTAAAACACTGTCTCTAACAGTAGAAAAACGAACGTTAGATTCAATTCTGATCTTCCTTGAAAAAGTTTGGTTTGGTAGGTCTGGAGCGCAATTTTCGCATTTTTAAAAATTTAATTTTGTAAAAATTCAAGAGGATTCAGATTGAGTTTTGAAAAAAGGTCTATTTTCAGCATACTTGCGGAAAAGACGGCCGGGCCGAGTTTTTTTTGAAAACGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTAAACAATCGACAAAAGAGT</pcr_primer_p1>
		<pcr_primer_p2>TCAAAGAAGATAAATTCGTGATT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTGTAAACAATCGACAAAAGAGTGCTCTCTCGAGAATTCATTTGATATCAAAACAATCAGTAAGTGATACCTTCTGAATTTATACGGTCTTTCTATAGTTCACAAACAAAAGTCAACAGAAGTTTGAATGTTGAAAACCAGTCCCGGAAAACTTCGTAAACTCATCCAGACAGTGAGAAAGTTTCTGAACCTCAAATCGGTATGACCTAGATTTGACCCAAATTACATAATCACGAATTTATCTTCTTTGA</canonical_amplicon>
		<polymorphic_amplicon>TTGTAAACAATCGACAAAAGAGTGCTCTCTCGAGAATTCATTTGATATCAAAACARTCAGTAAGTGATACCTTCTGAATTTATACGGTCTTTCTATAGTTCACAAACAAAAGTCAACAGAAGTTTGAATGTTGAAAACCAGTCCCGGAAAACTTCGTAAACTCATCCAGACAGTGAGAAAGTTTCTGAACCTCAAATCGGTATGACCTAGATTTGACCCAAATTACATAATCACGAATTTATCTTCTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17455</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>54871</contig_pos>
        <strand></strand>
        <context>TTYAAAAAAA[T/C]AGAGGAACTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACAGTTCTCTGTTATTTTGTTTTCCGATTAAACACAAGAATTAAAAAAAA</left_flank>
        <right_flank>AGAGGAACTGAACCACAAAGCGGCTTTTCCCGTTTTGGTGTGCTCTTGAC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATACAAATATATGCGCCTTCTCTTACTACTGTTTGTCTGTGAAAGAGCAATTCAGAAACTTTGGTGAGACTGGTAAAAAATGAAATGTCAATTTGAATTTGACAGGTGGCGAACAACTAGTCAAAAAACATCTATACTTCTTACCATGGAAAGTTCCCGGTATGTATTTTTGTATCTTTGATAGGACAGTTATAAAGTTGAGAATCGACCATTTCAAAAATATGCTTCAACTGAATAAAATTTGTTAAACAAACTACCCAGATACGAATTAAAAAATATCAGATTCCTGAAAGTCTAGAATACTAATTGGTGAATGTCGATATAATATAACGTATCGAGAAGCGAGCACATACTATCTTTCTAAAGAAACGCCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTCTGTTATTTTGTTTTCCGATTAAACACAAGAATTAAAAAAAATAGAGGAACTGAACCACAAAGCGGCTTTTCCCGTTTTGGTGTGCTCTTGACCCAACGCAGCGAAAAGTTCCAATTTTGGAGAAGCTTCTGTTTAGATGCGGGATGAGAGAGGGAGAAAGAAAGTGGGAGTATATAAATAAATACTTTTGTGATGAGAAATGTTAGAGAAATAGCAATTGTAAACAATCGACAAAAGAGTGCTCTCTCGAGAATTCATTTGATATCAAAACAATCAGTAAGTGATACCTTCTGAATTTATACGGTCTTTCTATAGTTCACAAACAAAAGTCAACAGAAGTTTGAATGTTGAAAACCAGTCCCGGAAAACTTCGTAAACTCATCCAGACAGTGAGAAAGTTTCTGAACCTCAAATCGGTATGACCTAGATTTGACCCAAATTACATAATCACGAATTTATCTTCTTTGAAATGAAAGTAACTTCAAAACGCAAAGAAAATAGAAAAATTAAATATGACACAAAAATACACTTTCAAGACCTAA</canonical>
            <polymorphic>AATACAAATATATGCGCCTTCTCTTACTACTGTTTGTCTGTGAAAGAGCAATTCAGAAACTTTGGTGAGACTGGTAAAAAATGAAATGTCAATTTGAATTTGACAGGTGGCGAACAACTAGTCAAAAAACATCTATACTTCTTACCATGGAAAGTTCCCGGTATGTATTTTTGTATCTTTGATAGGACAGTTATAAAGTTGAGAATCGACCATTTCAAAAATATGCTTCAACTGAATAAAATTTGTTAAACAAACTACCCAGATACGAATTAAAAAATATCAGATTCCTGAAAGTCTAGAATACTAATTGGTGAATGTCGATATAATATAACGTATCGAGAAGCGAGCACATACTATCTTTCTAAAGAAACGCCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTCTGTTATTTTGTTTTCCGATTAAACACAAGAATTAAAAAAAAYAGAGGAACTGAACCACAAAGCGGCTTTTCCCGTTTTGGTGTGCTCTTGACCCAACGCAGCGAAAAGTTCCAATTTTGGAGAAGCTTCTGTTTAGATGCGGGATGAGAGAGGGAGAAAGAAAGTGGGAGTATATAAATAAATACTTTTGTGATGAGAAATGTTAGAGAAATAGCAATTGTAAACAATCGACAAAAGAGTGCTCTCTCGAGAATTCATTTGATATCAAAACAATCAGTAAGTGATACCTTCTGAATTTATACGGTCTTTCTATAGTTCACAAACAAAAGTCAACAGAAGTTTGAATGTTGAAAACCAGTCCCGGAAAACTTCGTAAACTCATCCAGACAGTGAGAAAGTTTCTGAACCTCAAATCGGTATGACCTAGATTTGACCCAAATTACATAATCACGAATTTATCTTCTTTGAAATGAAAGTAACTTCAAAACGCAAAGAAAATAGAAAAATTAAATATGACACAAAAATACACTTTCAAGACCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCATTTTTCTACAGTTCTCTGTT</pcr_primer_p1>
		<pcr_primer_p2>CGATTGTTTACAATTGCTATTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCATTTTTCTACAGTTCTCTGTTATTTTGTTTTCCGATTAAACACAAGAATTAAAAAAAATAGAGGAACTGAACCACAAAGCGGCTTTTCCCGTTTTGGTGTGCTCTTGACCCAACGCAGCGAAAAGTTCCAATTTTGGAGAAGCTTCTGTTTAGATGCGGGATGAGAGAGGGAGAAAGAAAGTGGGAGTATATAAATAAATACTTTTGTGATGAGAAATGTTAGAGAAATAGCAATTGTAAACAATCG</canonical_amplicon>
		<polymorphic_amplicon>GCATTTTTCTACAGTTCTCTGTTATTTTGTTTTCCGATTAAACACAAGAATTAAAAAAAAYAGAGGAACTGAACCACAAAGCGGCTTTTCCCGTTTTGGTGTGCTCTTGACCCAACGCAGCGAAAAGTTCCAATTTTGGAGAAGCTTCTGTTTAGATGCGGGATGAGAGAGGGAGAAAGAAAGTGGGAGTATATAAATAAATACTTTTGTGATGAGAAATGTTAGAGAAATAGCAATTGTAAACAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17456</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>54843</contig_pos>
        <strand>+</strand>
        <context>TATTTTGTTT[C/T]CCGATTAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTCTGTTATTTTGTTT</left_flank>
        <right_flank>CCGATTAAACACAAGAATTAAAAAAAATAGAGGAACTGAACCACAAAGCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGGTCGTAATCGGTTGACAGAAGGGCAAATACAAATATATGCGCCTTCTCTTACTACTGTTTGTCTGTGAAAGAGCAATTCAGAAACTTTGGTGAGACTGGTAAAAAATGAAATGTCAATTTGAATTTGACAGGTGGCGAACAACTAGTCAAAAAACATCTATACTTCTTACCATGGAAAGTTCCCGGTATGTATTTTTGTATCTTTGATAGGACAGTTATAAAGTTGAGAATCGACCATTTCAAAAATATGCTTCAACTGAATAAAATTTGTTAAACAAACTACCCAGATACGAATTAAAAAATATCAGATTCCTGAAAGTCTAGAATACTAATTGGTGAATGTCGATATAATATAACGTATCGAGAAGCGAGCACATACTATCTTTCTAAAGAAACGCCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTCTGTTATTTTGTTTTCCGATTAAACACAAGAATTAAAAAAAATAGAGGAACTGAACCACAAAGCGGCTTTTCCCGTTTTGGTGTGCTCTTGACCCAACGCAGCGAAAAGTTCCAATTTTGGAGAAGCTTCTGTTTAGATGCGGGATGAGAGAGGGAGAAAGAAAGTGGGAGTATATAAATAAATACTTTTGTGATGAGAAATGTTAGAGAAATAGCAATTGTAAACAATCGACAAAAGAGTGCTCTCTCGAGAATTCATTTGATATCAAAACAATCAGTAAGTGATACCTTCTGAATTTATACGGTCTTTCTATAGTTCACAAACAAAAGTCAACAGAAGTTTGAATGTTGAAAACCAGTCCCGGAAAACTTCGTAAACTCATCCAGACAGTGAGAAAGTTTCTGAACCTCAAATCGGTATGACCTAGATTTGACCCAAATTACATAATCACGAATTTATCTTCTTTGAAATGAAAGTAACTTCAAAACGCAAAGAAAATAGAAAAATTAAATAT</canonical>
            <polymorphic>CCGGTCGTAATCGGTTGACAGAAGGGCAAATACAAATATATGCGCCTTCTCTTACTACTGTTTGTCTGTGAAAGAGCAATTCAGAAACTTTGGTGAGACTGGTAAAAAATGAAATGTCAATTTGAATTTGACAGGTGGCGAACAACTAGTCAAAAAACATCTATACTTCTTACCATGGAAAGTTCCCGGTATGTATTTTTGTATCTTTGATAGGACAGTTATAAAGTTGAGAATCGACCATTTCAAAAATATGCTTCAACTGAATAAAATTTGTTAAACAAACTACCCAGATACGAATTAAAAAATATCAGATTCCTGAAAGTCTAGAATACTAATTGGTGAATGTCGATATAATATAACGTATCGAGAAGCGAGCACATACTATCTTTCTAAAGAAACGCCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTCTGTTATTTTGTTTYCCGATTAAACACAAGAATTAAAAAAAATAGAGGAACTGAACCACAAAGCGGCTTTTCCCGTTTTGGTGTGCTCTTGACCCAACGCAGCGAAAAGTTCCAATTTTGGAGAAGCTTCTGTTTAGATGCGGGATGAGAGAGGGAGAAAGAAAGTGGGAGTATATAAATAAATACTTTTGTGATGAGAAATGTTAGAGAAATAGCAATTGTAAACAATCGACAAAAGAGTGCTCTCTCGAGAATTCATTTGATATCAAAACAATCAGTAAGTGATACCTTCTGAATTTATACGGTCTTTCTATAGTTCACAAACAAAAGTCAACAGAAGTTTGAATGTTGAAAACCAGTCCCGGAAAACTTCGTAAACTCATCCAGACAGTGAGAAAGTTTCTGAACCTCAAATCGGTATGACCTAGATTTGACCCAAATTACATAATCACGAATTTATCTTCTTTGAAATGAAAGTAACTTCAAAACGCAAAGAAAATAGAAAAATTAAATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>276 227 192 111 111 83</canonical_bands>
                <polymorphic_bands>468 227 111 111 83</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTGGCAGTCTCTACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACTTTCTTTCTCCCTCTCTCAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTCTGTTATTTTGTTTTCCGATTAAACACAAGAATTAAAAAAAATAGAGGAACTGAACCACAAAGCGGCTTTTCCCGTTTTGGTGTGCTCTTGACCCAACGCAGCGAAAAGTTCCAATTTTGGAGAAGCTTCTGTTTAGATGCGGGATGAGAGAGGGAGAAAGAAAGT</canonical_amplicon>
		<polymorphic_amplicon>CCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTCTGTTATTTTGTTTYCCGATTAAACACAAGAATTAAAAAAAATAGAGGAACTGAACCACAAAGCGGCTTTTCCCGTTTTGGTGTGCTCTTGACCCAACGCAGCGAAAAGTTCCAATTTTGGAGAAGCTTCTGTTTAGATGCGGGATGAGAGAGGGAGAAAGAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17457</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>54743</contig_pos>
        <strand>+</strand>
        <context>CTAAAGAAAC[A/G]CCTGGCAGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATAATATAACGTATCGAGAAGCGAGCACATACTATCTTTCTAAAGAAAC</left_flank>
        <right_flank>CCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATGAGAAATGTGGTGAAAACTGCAGTAATCCTTGGTTTTGGCGTACGGTTAATCTTCCGCGCGGAAGGTAACCCCCGCAGAGCAATATGAAAAGTTACCGGTCGTAATCGGTTGACAGAAGGGCAAATACAAATATATGCGCCTTCTCTTACTACTGTTTGTCTGTGAAAGAGCAATTCAGAAACTTTGGTGAGACTGGTAAAAAATGAAATGTCAATTTGAATTTGACAGGTGGCGAACAACTAGTCAAAAAACATCTATACTTCTTACCATGGAAAGTTCCCGGTATGTATTTTTGTATCTTTGATAGGACAGTTATAAAGTTGAGAATCGACCATTTCAAAAATATGCTTCAACTGAATAAAATTTGTTAAACAAACTACCCAGATACGAATTAAAAAATATCAGATTCCTGAAAGTCTAGAATACTAATTGGTGAATGTCGATATAATATAACGTATCGAGAAGCGAGCACATACTATCTTTCTAAAGAAACGCCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTCTGTTATTTTGTTTTCCGATTAAACACAAGAATTAAAAAAAATAGAGGAACTGAACCACAAAGCGGCTTTTCCCGTTTTGGTGTGCTCTTGACCCAACGCAGCGAAAAGTTCCAATTTTGGAGAAGCTTCTGTTTAGATGCGGGATGAGAGAGGGAGAAAGAAAGTGGGAGTATATAAATAAATACTTTTGTGATGAGAAATGTTAGAGAAATAGCAATTGTAAACAATCGACAAAAGAGTGCTCTCTCGAGAATTCATTTGATATCAAAACAATCAGTAAGTGATACCTTCTGAATTTATACGGTCTTTCTATAGTTCACAAACAAAAGTCAACAGAAGTTTGAATGTTGAAAACCAGTCCCGGAAAACTTCGTAAACTCATCCAGACAGTGAGAAAGTTTCTGAACCTCAAAT</canonical>
            <polymorphic>AAAATGAGAAATGTGGTGAAAACTGCAGTAATCCTTGGTTTTGGCGTACGGTTAATCTTCCGCGCGGAAGGTAACCCCCGCAGAGCAATATGAAAAGTTACCGGTCGTAATCGGTTGACAGAAGGGCAAATACAAATATATGCGCCTTCTCTTACTACTGTTTGTCTGTGAAAGAGCAATTCAGAAACTTTGGTGAGACTGGTAAAAAATGAAATGTCAATTTGAATTTGACAGGTGGCGAACAACTAGTCAAAAAACATCTATACTTCTTACCATGGAAAGTTCCCGGTATGTATTTTTGTATCTTTGATAGGACAGTTATAAAGTTGAGAATCGACCATTTCAAAAATATGCTTCAACTGAATAAAATTTGTTAAACAAACTACCCAGATACGAATTAAAAAATATCAGATTCCTGAAAGTCTAGAATACTAATTGGTGAATGTCGATATAATATAACGTATCGAGAAGCGAGCACATACTATCTTTCTAAAGAAACRCCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTCTGTTATTTTGTTTTCCGATTAAACACAAGAATTAAAAAAAATAGAGGAACTGAACCACAAAGCGGCTTTTCCCGTTTTGGTGTGCTCTTGACCCAACGCAGCGAAAAGTTCCAATTTTGGAGAAGCTTCTGTTTAGATGCGGGATGAGAGAGGGAGAAAGAAAGTGGGAGTATATAAATAAATACTTTTGTGATGAGAAATGTTAGAGAAATAGCAATTGTAAACAATCGACAAAAGAGTGCTCTCTCGAGAATTCATTTGATATCAAAACAATCAGTAAGTGATACCTTCTGAATTTATACGGTCTTTCTATAGTTCACAAACAAAAGTCAACAGAAGTTTGAATGTTGAAAACCAGTCCCGGAAAACTTCGTAAACTCATCCAGACAGTGAGAAAGTTTCTGAACCTCAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTAAACAAACTACCCAGATACG</pcr_primer_p1>
		<pcr_primer_p2>GAGAACTGTAGAAAAATGCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>214</pcr_amplicon_size>
		<canonical_amplicon>GTTAAACAAACTACCCAGATACGAATTAAAAAATATCAGATTCCTGAAAGTCTAGAATACTAATTGGTGAATGTCGATATAATATAACGTATCGAGAAGCGAGCACATACTATCTTTCTAAAGAAACGCCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTC</canonical_amplicon>
		<polymorphic_amplicon>GTTAAACAAACTACCCAGATACGAATTAAAAAATATCAGATTCCTGAAAGTCTAGAATACTAATTGGTGAATGTCGATATAATATAACGTATCGAGAAGCGAGCACATACTATCTTTCTAAAGAAACRCCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17458</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>54724</contig_pos>
        <strand>+</strand>
        <context>GCGAGCACAT[A/G]CTATCTTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTAATTGGTGAATGTCGATATAATATAACGTATCGAGAAGCGAGCACAT</left_flank>
        <right_flank>CTATCTTTCTAAAGAAACGCCTGGCAGTCTCTACAAAAAAAGCCTGAAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAGCGGTGTTTATTGGAAAATGAGAAATGTGGTGAAAACTGCAGTAATCCTTGGTTTTGGCGTACGGTTAATCTTCCGCGCGGAAGGTAACCCCCGCAGAGCAATATGAAAAGTTACCGGTCGTAATCGGTTGACAGAAGGGCAAATACAAATATATGCGCCTTCTCTTACTACTGTTTGTCTGTGAAAGAGCAATTCAGAAACTTTGGTGAGACTGGTAAAAAATGAAATGTCAATTTGAATTTGACAGGTGGCGAACAACTAGTCAAAAAACATCTATACTTCTTACCATGGAAAGTTCCCGGTATGTATTTTTGTATCTTTGATAGGACAGTTATAAAGTTGAGAATCGACCATTTCAAAAATATGCTTCAACTGAATAAAATTTGTTAAACAAACTACCCAGATACGAATTAAAAAATATCAGATTCCTGAAAGTCTAGAATACTAATTGGTGAATGTCGATATAATATAACGTATCGAGAAGCGAGCACATACTATCTTTCTAAAGAAACGCCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTCTGTTATTTTGTTTTCCGATTAAACACAAGAATTAAAAAAAATAGAGGAACTGAACCACAAAGCGGCTTTTCCCGTTTTGGTGTGCTCTTGACCCAACGCAGCGAAAAGTTCCAATTTTGGAGAAGCTTCTGTTTAGATGCGGGATGAGAGAGGGAGAAAGAAAGTGGGAGTATATAAATAAATACTTTTGTGATGAGAAATGTTAGAGAAATAGCAATTGTAAACAATCGACAAAAGAGTGCTCTCTCGAGAATTCATTTGATATCAAAACAATCAGTAAGTGATACCTTCTGAATTTATACGGTCTTTCTATAGTTCACAAACAAAAGTCAACAGAAGTTTGAATGTTGAAAACCAGTCCCGGAAAACTTCGTAAACTCATCCAGACAGTGAGA</canonical>
            <polymorphic>TGAAAGCGGTGTTTATTGGAAAATGAGAAATGTGGTGAAAACTGCAGTAATCCTTGGTTTTGGCGTACGGTTAATCTTCCGCGCGGAAGGTAACCCCCGCAGAGCAATATGAAAAGTTACCGGTCGTAATCGGTTGACAGAAGGGCAAATACAAATATATGCGCCTTCTCTTACTACTGTTTGTCTGTGAAAGAGCAATTCAGAAACTTTGGTGAGACTGGTAAAAAATGAAATGTCAATTTGAATTTGACAGGTGGCGAACAACTAGTCAAAAAACATCTATACTTCTTACCATGGAAAGTTCCCGGTATGTATTTTTGTATCTTTGATAGGACAGTTATAAAGTTGAGAATCGACCATTTCAAAAATATGCTTCAACTGAATAAAATTTGTTAAACAAACTACCCAGATACGAATTAAAAAATATCAGATTCCTGAAAGTCTAGAATACTAATTGGTGAATGTCGATATAATATAACGTATCGAGAAGCGAGCACATRCTATCTTTCTAAAGAAACGCCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTCTGTTATTTTGTTTTCCGATTAAACACAAGAATTAAAAAAAATAGAGGAACTGAACCACAAAGCGGCTTTTCCCGTTTTGGTGTGCTCTTGACCCAACGCAGCGAAAAGTTCCAATTTTGGAGAAGCTTCTGTTTAGATGCGGGATGAGAGAGGGAGAAAGAAAGTGGGAGTATATAAATAAATACTTTTGTGATGAGAAATGTTAGAGAAATAGCAATTGTAAACAATCGACAAAAGAGTGCTCTCTCGAGAATTCATTTGATATCAAAACAATCAGTAAGTGATACCTTCTGAATTTATACGGTCTTTCTATAGTTCACAAACAAAAGTCAACAGAAGTTTGAATGTTGAAAACCAGTCCCGGAAAACTTCGTAAACTCATCCAGACAGTGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTAAACAAACTACCCAGATACG</pcr_primer_p1>
		<pcr_primer_p2>GAGAACTGTAGAAAAATGCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>214</pcr_amplicon_size>
		<canonical_amplicon>GTTAAACAAACTACCCAGATACGAATTAAAAAATATCAGATTCCTGAAAGTCTAGAATACTAATTGGTGAATGTCGATATAATATAACGTATCGAGAAGCGAGCACATACTATCTTTCTAAAGAAACGCCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTC</canonical_amplicon>
		<polymorphic_amplicon>GTTAAACAAACTACCCAGATACGAATTAAAAAATATCAGATTCCTGAAAGTCTAGAATACTAATTGGTGAATGTCGATATAATATAACGTATCGAGAAGCGAGCACATRCTATCTTTCTAAAGAAACGCCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17459</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>54683</contig_pos>
        <strand>+</strand>
        <context>TACTAATTGG[C/T]GAATGTCGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATACGAATTAAAAAATATCAGATTCCTGAAAGTCTAGAATACTAATTGG</left_flank>
        <right_flank>GAATGTCGATATAATATAACGTATCGAGAAGCGAGCACATACTATCTTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAGAAACTTCAGAGAAAAAATAAGAGTCGGTCGTCACAATGAAAGCGGTGTTTATTGGAAAATGAGAAATGTGGTGAAAACTGCAGTAATCCTTGGTTTTGGCGTACGGTTAATCTTCCGCGCGGAAGGTAACCCCCGCAGAGCAATATGAAAAGTTACCGGTCGTAATCGGTTGACAGAAGGGCAAATACAAATATATGCGCCTTCTCTTACTACTGTTTGTCTGTGAAAGAGCAATTCAGAAACTTTGGTGAGACTGGTAAAAAATGAAATGTCAATTTGAATTTGACAGGTGGCGAACAACTAGTCAAAAAACATCTATACTTCTTACCATGGAAAGTTCCCGGTATGTATTTTTGTATCTTTGATAGGACAGTTATAAAGTTGAGAATCGACCATTTCAAAAATATGCTTCAACTGAATAAAATTTGTTAAACAAACTACCCAGATACGAATTAAAAAATATCAGATTCCTGAAAGTCTAGAATACTAATTGGTGAATGTCGATATAATATAACGTATCGAGAAGCGAGCACATACTATCTTTCTAAAGAAACGCCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTCTGTTATTTTGTTTTCCGATTAAACACAAGAATTAAAAAAAATAGAGGAACTGAACCACAAAGCGGCTTTTCCCGTTTTGGTGTGCTCTTGACCCAACGCAGCGAAAAGTTCCAATTTTGGAGAAGCTTCTGTTTAGATGCGGGATGAGAGAGGGAGAAAGAAAGTGGGAGTATATAAATAAATACTTTTGTGATGAGAAATGTTAGAGAAATAGCAATTGTAAACAATCGACAAAAGAGTGCTCTCTCGAGAATTCATTTGATATCAAAACAATCAGTAAGTGATACCTTCTGAATTTATACGGTCTTTCTATAGTTCACAAACAAAAGTCAACAGAAGTTTGAATGTTGAAAA</canonical>
            <polymorphic>CAAAGAAACTTCAGAGAAAAAATAAGAGTCGGTCGTCACAATGAAAGCGGTGTTTATTGGAAAATGAGAAATGTGGTGAAAACTGCAGTAATCCTTGGTTTTGGCGTACGGTTAATCTTCCGCGCGGAAGGTAACCCCCGCAGAGCAATATGAAAAGTTACCGGTCGTAATCGGTTGACAGAAGGGCAAATACAAATATATGCGCCTTCTCTTACTACTGTTTGTCTGTGAAAGAGCAATTCAGAAACTTTGGTGAGACTGGTAAAAAATGAAATGTCAATTTGAATTTGACAGGTGGCGAACAACTAGTCAAAAAACATCTATACTTCTTACCATGGAAAGTTCCCGGTATGTATTTTTGTATCTTTGATAGGACAGTTATAAAGTTGAGAATCGACCATTTCAAAAATATGCTTCAACTGAATAAAATTTGTTAAACAAACTACCCAGATACGAATTAAAAAATATCAGATTCCTGAAAGTCTAGAATACTAATTGGYGAATGTCGATATAATATAACGTATCGAGAAGCGAGCACATACTATCTTTCTAAAGAAACGCCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTCTGTTATTTTGTTTTCCGATTAAACACAAGAATTAAAAAAAATAGAGGAACTGAACCACAAAGCGGCTTTTCCCGTTTTGGTGTGCTCTTGACCCAACGCAGCGAAAAGTTCCAATTTTGGAGAAGCTTCTGTTTAGATGCGGGATGAGAGAGGGAGAAAGAAAGTGGGAGTATATAAATAAATACTTTTGTGATGAGAAATGTTAGAGAAATAGCAATTGTAAACAATCGACAAAAGAGTGCTCTCTCGAGAATTCATTTGATATCAAAACAATCAGTAAGTGATACCTTCTGAATTTATACGGTCTTTCTATAGTTCACAAACAAAAGTCAACAGAAGTTTGAATGTTGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>204 152 85 82 49 49 42 42 38 36 36 35 32 26 25 25 23 14 3 2</canonical_bands>
                <polymorphic_bands>240 152 85 82 49 49 42 42 38 36 35 32 26 25 25 23 14 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTAAACAAACTACCCAGATACG</pcr_primer_p1>
		<pcr_primer_p2>GAGAACTGTAGAAAAATGCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>214</pcr_amplicon_size>
		<canonical_amplicon>GTTAAACAAACTACCCAGATACGAATTAAAAAATATCAGATTCCTGAAAGTCTAGAATACTAATTGGTGAATGTCGATATAATATAACGTATCGAGAAGCGAGCACATACTATCTTTCTAAAGAAACGCCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTC</canonical_amplicon>
		<polymorphic_amplicon>GTTAAACAAACTACCCAGATACGAATTAAAAAATATCAGATTCCTGAAAGTCTAGAATACTAATTGGYGAATGTCGATATAATATAACGTATCGAGAAGCGAGCACATACTATCTTTCTAAAGAAACGCCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17460</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>54670</contig_pos>
        <strand>+</strand>
        <context>TGAAAGTCTA[A/G]AATACTAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACAAACTACCCAGATACGAATTAAAAAATATCAGATTCCTGAAAGTCTA</left_flank>
        <right_flank>AATACTAATTGGTGAATGTCGATATAATATAACGTATCGAGAAGCGAGCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTACTAGATTGCAAAGAAACTTCAGAGAAAAAATAAGAGTCGGTCGTCACAATGAAAGCGGTGTTTATTGGAAAATGAGAAATGTGGTGAAAACTGCAGTAATCCTTGGTTTTGGCGTACGGTTAATCTTCCGCGCGGAAGGTAACCCCCGCAGAGCAATATGAAAAGTTACCGGTCGTAATCGGTTGACAGAAGGGCAAATACAAATATATGCGCCTTCTCTTACTACTGTTTGTCTGTGAAAGAGCAATTCAGAAACTTTGGTGAGACTGGTAAAAAATGAAATGTCAATTTGAATTTGACAGGTGGCGAACAACTAGTCAAAAAACATCTATACTTCTTACCATGGAAAGTTCCCGGTATGTATTTTTGTATCTTTGATAGGACAGTTATAAAGTTGAGAATCGACCATTTCAAAAATATGCTTCAACTGAATAAAATTTGTTAAACAAACTACCCAGATACGAATTAAAAAATATCAGATTCCTGAAAGTCTAGAATACTAATTGGTGAATGTCGATATAATATAACGTATCGAGAAGCGAGCACATACTATCTTTCTAAAGAAACGCCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTCTGTTATTTTGTTTTCCGATTAAACACAAGAATTAAAAAAAATAGAGGAACTGAACCACAAAGCGGCTTTTCCCGTTTTGGTGTGCTCTTGACCCAACGCAGCGAAAAGTTCCAATTTTGGAGAAGCTTCTGTTTAGATGCGGGATGAGAGAGGGAGAAAGAAAGTGGGAGTATATAAATAAATACTTTTGTGATGAGAAATGTTAGAGAAATAGCAATTGTAAACAATCGACAAAAGAGTGCTCTCTCGAGAATTCATTTGATATCAAAACAATCAGTAAGTGATACCTTCTGAATTTATACGGTCTTTCTATAGTTCACAAACAAAAGTCAACAGAAGTT</canonical>
            <polymorphic>AAGTACTAGATTGCAAAGAAACTTCAGAGAAAAAATAAGAGTCGGTCGTCACAATGAAAGCGGTGTTTATTGGAAAATGAGAAATGTGGTGAAAACTGCAGTAATCCTTGGTTTTGGCGTACGGTTAATCTTCCGCGCGGAAGGTAACCCCCGCAGAGCAATATGAAAAGTTACCGGTCGTAATCGGTTGACAGAAGGGCAAATACAAATATATGCGCCTTCTCTTACTACTGTTTGTCTGTGAAAGAGCAATTCAGAAACTTTGGTGAGACTGGTAAAAAATGAAATGTCAATTTGAATTTGACAGGTGGCGAACAACTAGTCAAAAAACATCTATACTTCTTACCATGGAAAGTTCCCGGTATGTATTTTTGTATCTTTGATAGGACAGTTATAAAGTTGAGAATCGACCATTTCAAAAATATGCTTCAACTGAATAAAATTTGTTAAACAAACTACCCAGATACGAATTAAAAAATATCAGATTCCTGAAAGTCTARAATACTAATTGGTGAATGTCGATATAATATAACGTATCGAGAAGCGAGCACATACTATCTTTCTAAAGAAACGCCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTCTGTTATTTTGTTTTCCGATTAAACACAAGAATTAAAAAAAATAGAGGAACTGAACCACAAAGCGGCTTTTCCCGTTTTGGTGTGCTCTTGACCCAACGCAGCGAAAAGTTCCAATTTTGGAGAAGCTTCTGTTTAGATGCGGGATGAGAGAGGGAGAAAGAAAGTGGGAGTATATAAATAAATACTTTTGTGATGAGAAATGTTAGAGAAATAGCAATTGTAAACAATCGACAAAAGAGTGCTCTCTCGAGAATTCATTTGATATCAAAACAATCAGTAAGTGATACCTTCTGAATTTATACGGTCTTTCTATAGTTCACAAACAAAAGTCAACAGAAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>392 313 178 111 6</canonical_bands>
                <polymorphic_bands>392 313 289 6</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>488 208 159 95 41 9</canonical_bands>
                <polymorphic_bands>488 208 159 95 50</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTAAACAAACTACCCAGATACG</pcr_primer_p1>
		<pcr_primer_p2>GAGAACTGTAGAAAAATGCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>214</pcr_amplicon_size>
		<canonical_amplicon>GTTAAACAAACTACCCAGATACGAATTAAAAAATATCAGATTCCTGAAAGTCTAGAATACTAATTGGTGAATGTCGATATAATATAACGTATCGAGAAGCGAGCACATACTATCTTTCTAAAGAAACGCCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTC</canonical_amplicon>
		<polymorphic_amplicon>GTTAAACAAACTACCCAGATACGAATTAAAAAATATCAGATTCCTGAAAGTCTARAATACTAATTGGTGAATGTCGATATAATATAACGTATCGAGAAGCGAGCACATACTATCTTTCTAAAGAAACGCCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17461</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>54644</contig_pos>
        <strand>+</strand>
        <context>ATACGAATTA[A/T]AAAATATCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGCTTCAACTGAATAAAATTTGTTAAACAAACTACCCAGATACGAATTA</left_flank>
        <right_flank>AAAATATCAGATTCCTGAAAGTCTAGAATACTAATTGGTGAATGTCGATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGACTAAAATTGAAGAAAATTAAAAAGTACTAGATTGCAAAGAAACTTCAGAGAAAAAATAAGAGTCGGTCGTCACAATGAAAGCGGTGTTTATTGGAAAATGAGAAATGTGGTGAAAACTGCAGTAATCCTTGGTTTTGGCGTACGGTTAATCTTCCGCGCGGAAGGTAACCCCCGCAGAGCAATATGAAAAGTTACCGGTCGTAATCGGTTGACAGAAGGGCAAATACAAATATATGCGCCTTCTCTTACTACTGTTTGTCTGTGAAAGAGCAATTCAGAAACTTTGGTGAGACTGGTAAAAAATGAAATGTCAATTTGAATTTGACAGGTGGCGAACAACTAGTCAAAAAACATCTATACTTCTTACCATGGAAAGTTCCCGGTATGTATTTTTGTATCTTTGATAGGACAGTTATAAAGTTGAGAATCGACCATTTCAAAAATATGCTTCAACTGAATAAAATTTGTTAAACAAACTACCCAGATACGAATTAAAAAATATCAGATTCCTGAAAGTCTAGAATACTAATTGGTGAATGTCGATATAATATAACGTATCGAGAAGCGAGCACATACTATCTTTCTAAAGAAACGCCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTCTGTTATTTTGTTTTCCGATTAAACACAAGAATTAAAAAAAATAGAGGAACTGAACCACAAAGCGGCTTTTCCCGTTTTGGTGTGCTCTTGACCCAACGCAGCGAAAAGTTCCAATTTTGGAGAAGCTTCTGTTTAGATGCGGGATGAGAGAGGGAGAAAGAAAGTGGGAGTATATAAATAAATACTTTTGTGATGAGAAATGTTAGAGAAATAGCAATTGTAAACAATCGACAAAAGAGTGCTCTCTCGAGAATTCATTTGATATCAAAACAATCAGTAAGTGATACCTTCTGAATTTATACGGTCTTTCTATAG</canonical>
            <polymorphic>AAAGACTAAAATTGAAGAAAATTAAAAAGTACTAGATTGCAAAGAAACTTCAGAGAAAAAATAAGAGTCGGTCGTCACAATGAAAGCGGTGTTTATTGGAAAATGAGAAATGTGGTGAAAACTGCAGTAATCCTTGGTTTTGGCGTACGGTTAATCTTCCGCGCGGAAGGTAACCCCCGCAGAGCAATATGAAAAGTTACCGGTCGTAATCGGTTGACAGAAGGGCAAATACAAATATATGCGCCTTCTCTTACTACTGTTTGTCTGTGAAAGAGCAATTCAGAAACTTTGGTGAGACTGGTAAAAAATGAAATGTCAATTTGAATTTGACAGGTGGCGAACAACTAGTCAAAAAACATCTATACTTCTTACCATGGAAAGTTCCCGGTATGTATTTTTGTATCTTTGATAGGACAGTTATAAAGTTGAGAATCGACCATTTCAAAAATATGCTTCAACTGAATAAAATTTGTTAAACAAACTACCCAGATACGAATTAWAAAATATCAGATTCCTGAAAGTCTAGAATACTAATTGGTGAATGTCGATATAATATAACGTATCGAGAAGCGAGCACATACTATCTTTCTAAAGAAACGCCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTCTGTTATTTTGTTTTCCGATTAAACACAAGAATTAAAAAAAATAGAGGAACTGAACCACAAAGCGGCTTTTCCCGTTTTGGTGTGCTCTTGACCCAACGCAGCGAAAAGTTCCAATTTTGGAGAAGCTTCTGTTTAGATGCGGGATGAGAGAGGGAGAAAGAAAGTGGGAGTATATAAATAAATACTTTTGTGATGAGAAATGTTAGAGAAATAGCAATTGTAAACAATCGACAAAAGAGTGCTCTCTCGAGAATTCATTTGATATCAAAACAATCAGTAAGTGATACCTTCTGAATTTATACGGTCTTTCTATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>322 283 207 129 24 22 13</canonical_bands>
                <polymorphic_bands>322 283 231 129 22 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCGAACAACTAGTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TCGCTTCTCGATACGTTATATT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>GGCGAACAACTAGTCAAAAAACATCTATACTTCTTACCATGGAAAGTTCCCGGTATGTATTTTTGTATCTTTGATAGGACAGTTATAAAGTTGAGAATCGACCATTTCAAAAATATGCTTCAACTGAATAAAATTTGTTAAACAAACTACCCAGATACGAATTAAAAAATATCAGATTCCTGAAAGTCTAGAATACTAATTGGTGAATGTCGATATAATATAACGTATCGAGAAGCGA</canonical_amplicon>
		<polymorphic_amplicon>GGCGAACAACTAGTCAAAAAACATCTATACTTCTTACCATGGAAAGTTCCCGGTATGTATTTTTGTATCTTTGATAGGACAGTTATAAAGTTGAGAATCGACCATTTCAAAAATATGCTTCAACTGAATAAAATTTGTTAAACAAACTACCCAGATACGAATTAWAAAATATCAGATTCCTGAAAGTCTAGAATACTAATTGGTGAATGTCGATATAATATAACGTATCGAGAAGCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17462</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>127986</contig_pos>
        <strand>+</strand>
        <context>GTACAAGCAA[A/T]GTTCGGAGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCTCGTGGCAAACCAGGTCAGTGGGAGGAGCCAATTGTTTGTACAAGCAA</left_flank>
        <right_flank>GTTCGGAGCAACACTACAGAAGTTATATCCAGATGTTCAGAAGGAGCAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCTTTCTTCTCCTTGACCGAAATTTCTTCTGAAACTAGTGATTATATGTTTTCAAAACTTGGATAGTTACTTACCGGAAAGCTTCTAGAACACTCTGAAATCTCTCATCCACATATCCACTAACATCGTCATCATTGACATAAGGAGTAAGCCAACAAGATAAGAAAGGTTGTACTACAAAGGGAATCGCAAATAGATATAAACATCCTAATGTGTCAAAATCTAGTCGCATTTCTGAAAGTAATTAAATTCAAGTTGATTAAACAAAAATAACAGAATGGGACAAAAACTGAAACGAGGAGTACTTATAATTGAAGAATTCGTACAGAAAGAATGTGACACCAAAACGAGGAACAAGTTTCTCAGGGAACAATGACCGAAAGTGTCTAAAAACAAAATGATGATAAAATCTTTGTGCCCTTTTATACAAACAGTTGTTGCTGCTGTCCTCGTGGCAAACCAGGTCAGTGGGAGGAGCCAATTGTTTGTACAAGCAATGTTCGGAGCAACACTACAGAAGTTATATCCAGATGTTCAGAAGGAGCAAAAAAGGGGAGAAACCCCGTAAAGTTGTTGTGTGTATGTTTTGAATTGACCAGAAGAGGGAGAGGACGTACCGAACTCGCCTATTGTGTTGTGGTGAGTGATAAGATTAAAAGAGGAGTGATAAGACCAGCGAAAGTTCAAAAATATAATATAGTGAGCTAGAGAGCAAAGTGATATGTAGCCCTAAGATTTTATAAAACCAGCTATTCCAGAACATTTGAAATCGTCTATTGTTAGATTTTCAAAGGGGTTATGGTTGCAAAAAGTGAATACGGCCTCATGGAAAATAGTTTTGCAGCACAACGTGGAAGTGAAAAGGCTGATACAGTACTCTGGAAGAATAAAAAAGACAACTGCAAAACTTTTTATTTATTTGTGATTGCATATTCTGATATTTTCAGAACGATCGGAGGTACCATCTAATGGACGATATGATTCTAATCCCAGAGGAC</canonical>
            <polymorphic>TCTCTTTCTTCTCCTTGACCGAAATTTCTTCTGAAACTAGTGATTATATGTTTTCAAAACTTGGATAGTTACTTACCGGAAAGCTTCTAGAACACTCTGAAATCTCTCATCCACATATCCACTAACATCGTCATCATTGACATAAGGAGTAAGCCAACAAGATAAGAAAGGTTGTACTACAAAGGGAATCGCAAATAGATATAAACATCCTAATGTGTCAAAATCTAGTCGCATTTCTGAAAGTAATTAAATTCAAGTTGATTAAACAAAAATAACAGAATGGGACAAAAACTGAAACGAGGAGTACTTATAATTGAAGAATTCGTACAGAAAGAATGTGACACCAAAACGAGGAACAAGTTTCTCAGGGAACAATGACCGAAAGTGTCTAAAAACAAAATGATGATAAAATCTTTGTGCCCTTTTATACAAACAGTTGTTGCTGCTGTCCTCGTGGCAAACCAGGTCAGTGGGAGGAGCCAATTGTTTGTACAAGCAAWGTTCGGAGCAACACTACAGAAGTTATATCCAGATGTTCAGAAGGAGCAAAAAAGGGGAGAAACCCCGTAAAGTTGTTGTGTGTATGTTTTGAATTGACCAGAAGAGGGAGAGGACGTACCGAACTCGCCTATTGTGTTGTGGTGAGTGATAAGATTAAAAGAGGAGTGATAAGACCAGCGAAAGTTCAAAAATATAATATAGTGAGCTAGAGAGCAAAGTGATATGTAGCCCTAAGATTTTATAAAACCAGCTATTCCAGAACATTTGAAATCGTCTATTGTTAGATTTTCAAAGGGGTTATGGTTGCAAAAAGTGAATACGGCCTCATGGAAAATAGTTTTGCAGCACAACGTGGAAGTGAAAAGGCTGATACAGTACTCTGGAAGAATAAAAAAGACAACTGCAAAACTTTTTATTTATTTGTGATTGCATATTCTGATATTTTCAGAACGATCGGAGGTACCATCTAATGGACGATATGATTCTAATCCCAGAGGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCTTTGTGCCCTTTTATAC</pcr_primer_p1>
		<pcr_primer_p2>TAATCTTATCACTCACCACAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATCTTTGTGCCCTTTTATACAAACAGTTGTTGCTGCTGTCCTCGTGGCAAACCAGGTCAGTGGGAGGAGCCAATTGTTTGTACAAGCAATGTTCGGAGCAACACTACAGAAGTTATATCCAGATGTTCAGAAGGAGCAAAAAAGGGGAGAAACCCCGTAAAGTTGTTGTGTGTATGTTTTGAATTGACCAGAAGAGGGAGAGGACGTACCGAACTCGCCTATTGTGTTGTGGTGAGTGATAAGATTA</canonical_amplicon>
		<polymorphic_amplicon>AAAATCTTTGTGCCCTTTTATACAAACAGTTGTTGCTGCTGTCCTCGTGGCAAACCAGGTCAGTGGGAGGAGCCAATTGTTTGTACAAGCAAWGTTCGGAGCAACACTACAGAAGTTATATCCAGATGTTCAGAAGGAGCAAAAAAGGGGAGAAACCCCGTAAAGTTGTTGTGTGTATGTTTTGAATTGACCAGAAGAGGGAGAGGACGTACCGAACTCGCCTATTGTGTTGTGGTGAGTGATAAGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17463</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>128149</contig_pos>
        <strand>+</strand>
        <context>GATTAAAAGA[A/G]GAGTGATAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACGTACCGAACTCGCCTATTGTGTTGTGGTGAGTGATAAGATTAAAAGA</left_flank>
        <right_flank>GAGTGATAAGACCAGCGAAAGTTCAAAAATATAATATAGTGAGCTAGAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAAGGTTGTACTACAAAGGGAATCGCAAATAGATATAAACATCCTAATGTGTCAAAATCTAGTCGCATTTCTGAAAGTAATTAAATTCAAGTTGATTAAACAAAAATAACAGAATGGGACAAAAACTGAAACGAGGAGTACTTATAATTGAAGAATTCGTACAGAAAGAATGTGACACCAAAACGAGGAACAAGTTTCTCAGGGAACAATGACCGAAAGTGTCTAAAAACAAAATGATGATAAAATCTTTGTGCCCTTTTATACAAACAGTTGTTGCTGCTGTCCTCGTGGCAAACCAGGTCAGTGGGAGGAGCCAATTGTTTGTACAAGCAATGTTCGGAGCAACACTACAGAAGTTATATCCAGATGTTCAGAAGGAGCAAAAAAGGGGAGAAACCCCGTAAAGTTGTTGTGTGTATGTTTTGAATTGACCAGAAGAGGGAGAGGACGTACCGAACTCGCCTATTGTGTTGTGGTGAGTGATAAGATTAAAAGAGGAGTGATAAGACCAGCGAAAGTTCAAAAATATAATATAGTGAGCTAGAGAGCAAAGTGATATGTAGCCCTAAGATTTTATAAAACCAGCTATTCCAGAACATTTGAAATCGTCTATTGTTAGATTTTCAAAGGGGTTATGGTTGCAAAAAGTGAATACGGCCTCATGGAAAATAGTTTTGCAGCACAACGTGGAAGTGAAAAGGCTGATACAGTACTCTGGAAGAATAAAAAAGACAACTGCAAAACTTTTTATTTATTTGTGATTGCATATTCTGATATTTTCAGAACGATCGGAGGTACCATCTAATGGACGATATGATTCTAATCCCAGAGGACCTAATATATTTCAAAATATCAAACAAAAAAAAAGGAAAATTATCAGAGAAAATATTAAAATAACCTACAGAGAGCCTCAACTCCTGTAGACTAAACCACCCGGCCCTAGTTCCTAGAAACTGATAACGGAAACTGCTGAATCTGTGCATTTTCTCCTCTCTCT</canonical>
            <polymorphic>AAGAAAGGTTGTACTACAAAGGGAATCGCAAATAGATATAAACATCCTAATGTGTCAAAATCTAGTCGCATTTCTGAAAGTAATTAAATTCAAGTTGATTAAACAAAAATAACAGAATGGGACAAAAACTGAAACGAGGAGTACTTATAATTGAAGAATTCGTACAGAAAGAATGTGACACCAAAACGAGGAACAAGTTTCTCAGGGAACAATGACCGAAAGTGTCTAAAAACAAAATGATGATAAAATCTTTGTGCCCTTTTATACAAACAGTTGTTGCTGCTGTCCTCGTGGCAAACCAGGTCAGTGGGAGGAGCCAATTGTTTGTACAAGCAATGTTCGGAGCAACACTACAGAAGTTATATCCAGATGTTCAGAAGGAGCAAAAAAGGGGAGAAACCCCGTAAAGTTGTTGTGTGTATGTTTTGAATTGACCAGAAGAGGGAGAGGACGTACCGAACTCGCCTATTGTGTTGTGGTGAGTGATAAGATTAAAAGARGAGTGATAAGACCAGCGAAAGTTCAAAAATATAATATAGTGAGCTAGAGAGCAAAGTGATATGTAGCCCTAAGATTTTATAAAACCAGCTATTCCAGAACATTTGAAATCGTCTATTGTTAGATTTTCAAAGGGGTTATGGTTGCAAAAAGTGAATACGGCCTCATGGAAAATAGTTTTGCAGCACAACGTGGAAGTGAAAAGGCTGATACAGTACTCTGGAAGAATAAAAAAGACAACTGCAAAACTTTTTATTTATTTGTGATTGCATATTCTGATATTTTCAGAACGATCGGAGGTACCATCTAATGGACGATATGATTCTAATCCCAGAGGACCTAATATATTTCAAAATATCAAACAAAAAAAAAGGAAAATTATCAGAGAAAATATTAAAATAACCTACAGAGAGCCTCAACTCCTGTAGACTAAACCACCCGGCCCTAGTTCCTAGAAACTGATAACGGAAACTGCTGAATCTGTGCATTTTCTCCTCTCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTGTGTATGTTTTGAATTGAC</pcr_primer_p1>
		<pcr_primer_p2>GTATTCACTTTTTGCAACCATAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTGTGTGTATGTTTTGAATTGACCAGAAGAGGGAGAGGACGTACCGAACTCGCCTATTGTGTTGTGGTGAGTGATAAGATTAAAAGAGGAGTGATAAGACCAGCGAAAGTTCAAAAATATAATATAGTGAGCTAGAGAGCAAAGTGATATGTAGCCCTAAGATTTTATAAAACCAGCTATTCCAGAACATTTGAAATCGTCTATTGTTAGATTTTCAAAGGGGTTATGGTTGCAAAAAGTGAATAC</canonical_amplicon>
		<polymorphic_amplicon>TTGTGTGTATGTTTTGAATTGACCAGAAGAGGGAGAGGACGTACCGAACTCGCCTATTGTGTTGTGGTGAGTGATAAGATTAAAAGARGAGTGATAAGACCAGCGAAAGTTCAAAAATATAATATAGTGAGCTAGAGAGCAAAGTGATATGTAGCCCTAAGATTTTATAAAACCAGCTATTCCAGAACATTTGAAATCGTCTATTGTTAGATTTTCAAAGGGGTTATGGTTGCAAAAAGTGAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17464</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>128220</contig_pos>
        <strand>+</strand>
        <context>ATGTAGCCCT[A/G]RGATTTTATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTCAAAAATATAATATAGTGAGCTAGAGAGCAAAGTGATATGTAGCCCT</left_flank>
        <right_flank>AGATTTTATAAAACCAGCTATTCCAGAACATTTGAAATCGTCTATTGTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGAAAGTAATTAAATTCAAGTTGATTAAACAAAAATAACAGAATGGGACAAAAACTGAAACGAGGAGTACTTATAATTGAAGAATTCGTACAGAAAGAATGTGACACCAAAACGAGGAACAAGTTTCTCAGGGAACAATGACCGAAAGTGTCTAAAAACAAAATGATGATAAAATCTTTGTGCCCTTTTATACAAACAGTTGTTGCTGCTGTCCTCGTGGCAAACCAGGTCAGTGGGAGGAGCCAATTGTTTGTACAAGCAATGTTCGGAGCAACACTACAGAAGTTATATCCAGATGTTCAGAAGGAGCAAAAAAGGGGAGAAACCCCGTAAAGTTGTTGTGTGTATGTTTTGAATTGACCAGAAGAGGGAGAGGACGTACCGAACTCGCCTATTGTGTTGTGGTGAGTGATAAGATTAAAAGAGGAGTGATAAGACCAGCGAAAGTTCAAAAATATAATATAGTGAGCTAGAGAGCAAAGTGATATGTAGCCCTAAGATTTTATAAAACCAGCTATTCCAGAACATTTGAAATCGTCTATTGTTAGATTTTCAAAGGGGTTATGGTTGCAAAAAGTGAATACGGCCTCATGGAAAATAGTTTTGCAGCACAACGTGGAAGTGAAAAGGCTGATACAGTACTCTGGAAGAATAAAAAAGACAACTGCAAAACTTTTTATTTATTTGTGATTGCATATTCTGATATTTTCAGAACGATCGGAGGTACCATCTAATGGACGATATGATTCTAATCCCAGAGGACCTAATATATTTCAAAATATCAAACAAAAAAAAAGGAAAATTATCAGAGAAAATATTAAAATAACCTACAGAGAGCCTCAACTCCTGTAGACTAAACCACCCGGCCCTAGTTCCTAGAAACTGATAACGGAAACTGCTGAATCTGTGCATTTTCTCCTCTCTCTTATGATACATGATATCTATTTTTGATCAGAAAGTGTGAACCCGAAGGCTAGTGCACACTGAACTTGCTCTT</canonical>
            <polymorphic>TTCTGAAAGTAATTAAATTCAAGTTGATTAAACAAAAATAACAGAATGGGACAAAAACTGAAACGAGGAGTACTTATAATTGAAGAATTCGTACAGAAAGAATGTGACACCAAAACGAGGAACAAGTTTCTCAGGGAACAATGACCGAAAGTGTCTAAAAACAAAATGATGATAAAATCTTTGTGCCCTTTTATACAAACAGTTGTTGCTGCTGTCCTCGTGGCAAACCAGGTCAGTGGGAGGAGCCAATTGTTTGTACAAGCAATGTTCGGAGCAACACTACAGAAGTTATATCCAGATGTTCAGAAGGAGCAAAAAAGGGGAGAAACCCCGTAAAGTTGTTGTGTGTATGTTTTGAATTGACCAGAAGAGGGAGAGGACGTACCGAACTCGCCTATTGTGTTGTGGTGAGTGATAAGATTAAAAGAGGAGTGATAAGACCAGCGAAAGTTCAAAAATATAATATAGTGAGCTAGAGAGCAAAGTGATATGTAGCCCTRAGATTTTATAAAACCAGCTATTCCAGAACATTTGAAATCGTCTATTGTTAGATTTTCAAAGGGGTTATGGTTGCAAAAAGTGAATACGGCCTCATGGAAAATAGTTTTGCAGCACAACGTGGAAGTGAAAAGGCTGATACAGTACTCTGGAAGAATAAAAAAGACAACTGCAAAACTTTTTATTTATTTGTGATTGCATATTCTGATATTTTCAGAACGATCGGAGGTACCATCTAATGGACGATATGATTCTAATCCCAGAGGACCTAATATATTTCAAAATATCAAACAAAAAAAAAGGAAAATTATCAGAGAAAATATTAAAATAACCTACAGAGAGCCTCAACTCCTGTAGACTAAACCACCCGGCCCTAGTTCCTAGAAACTGATAACGGAAACTGCTGAATCTGTGCATTTTCTCCTCTCTCTTATGATACATGATATCTATTTTTGATCAGAAAGTGTGAACCCGAAGGCTAGTGCACACTGAACTTGCTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTTGTGGTGAGTGATAAGATT</pcr_primer_p1>
		<pcr_primer_p2>CAGAGTACTGTATCAGCCTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGTTGTGGTGAGTGATAAGATTAAAAGAGGAGTGATAAGACCAGCGAAAGTTCAAAAATATAATATAGTGAGCTAGAGAGCAAAGTGATATGTAGCCCTAAGATTTTATAAAACCAGCTATTCCAGAACATTTGAAATCGTCTATTGTTAGATTTTCAAAGGGGTTATGGTTGCAAAAAGTGAATACGGCCTCATGGAAAATAGTTTTGCAGCACAACGTGGAAGTGAAAAGGCTGATACAGTACTCTG</canonical_amplicon>
		<polymorphic_amplicon>GTGTTGTGGTGAGTGATAAGATTAAAAGAGGAGTGATAAGACCAGCGAAAGTTCAAAAATATAATATAGTGAGCTAGAGAGCAAAGTGATATGTAGCCCTRAGATTTTATAAAACCAGCTATTCCAGAACATTTGAAATCGTCTATTGTTAGATTTTCAAAGGGGTTATGGTTGCAAAAAGTGAATACGGCCTCATGGAAAATAGTTTTGCAGCACAACGTGGAAGTGAAAAGGCTGATACAGTACTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17465</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>128221</contig_pos>
        <strand>+</strand>
        <context>TGTAGCCCTR[A/G]GATTTTATAM</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAAAAATATAATATAGTGAGCTAGAGAGCAAAGTGATATGTAGCCCTA</left_flank>
        <right_flank>GATTTTATAAAACCAGCTATTCCAGAACATTTGAAATCGTCTATTGTTAG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGAAAGTAATTAAATTCAAGTTGATTAAACAAAAATAACAGAATGGGACAAAAACTGAAACGAGGAGTACTTATAATTGAAGAATTCGTACAGAAAGAATGTGACACCAAAACGAGGAACAAGTTTCTCAGGGAACAATGACCGAAAGTGTCTAAAAACAAAATGATGATAAAATCTTTGTGCCCTTTTATACAAACAGTTGTTGCTGCTGTCCTCGTGGCAAACCAGGTCAGTGGGAGGAGCCAATTGTTTGTACAAGCAATGTTCGGAGCAACACTACAGAAGTTATATCCAGATGTTCAGAAGGAGCAAAAAAGGGGAGAAACCCCGTAAAGTTGTTGTGTGTATGTTTTGAATTGACCAGAAGAGGGAGAGGACGTACCGAACTCGCCTATTGTGTTGTGGTGAGTGATAAGATTAAAAGAGGAGTGATAAGACCAGCGAAAGTTCAAAAATATAATATAGTGAGCTAGAGAGCAAAGTGATATGTAGCCCTAAGATTTTATAAAACCAGCTATTCCAGAACATTTGAAATCGTCTATTGTTAGATTTTCAAAGGGGTTATGGTTGCAAAAAGTGAATACGGCCTCATGGAAAATAGTTTTGCAGCACAACGTGGAAGTGAAAAGGCTGATACAGTACTCTGGAAGAATAAAAAAGACAACTGCAAAACTTTTTATTTATTTGTGATTGCATATTCTGATATTTTCAGAACGATCGGAGGTACCATCTAATGGACGATATGATTCTAATCCCAGAGGACCTAATATATTTCAAAATATCAAACAAAAAAAAAGGAAAATTATCAGAGAAAATATTAAAATAACCTACAGAGAGCCTCAACTCCTGTAGACTAAACCACCCGGCCCTAGTTCCTAGAAACTGATAACGGAAACTGCTGAATCTGTGCATTTTCTCCTCTCTCTTATGATACATGATATCTATTTTTGATCAGAAAGTGTGAACCCGAAGGCTAGTGCACACTGAACTTGCTCTTG</canonical>
            <polymorphic>TCTGAAAGTAATTAAATTCAAGTTGATTAAACAAAAATAACAGAATGGGACAAAAACTGAAACGAGGAGTACTTATAATTGAAGAATTCGTACAGAAAGAATGTGACACCAAAACGAGGAACAAGTTTCTCAGGGAACAATGACCGAAAGTGTCTAAAAACAAAATGATGATAAAATCTTTGTGCCCTTTTATACAAACAGTTGTTGCTGCTGTCCTCGTGGCAAACCAGGTCAGTGGGAGGAGCCAATTGTTTGTACAAGCAATGTTCGGAGCAACACTACAGAAGTTATATCCAGATGTTCAGAAGGAGCAAAAAAGGGGAGAAACCCCGTAAAGTTGTTGTGTGTATGTTTTGAATTGACCAGAAGAGGGAGAGGACGTACCGAACTCGCCTATTGTGTTGTGGTGAGTGATAAGATTAAAAGAGGAGTGATAAGACCAGCGAAAGTTCAAAAATATAATATAGTGAGCTAGAGAGCAAAGTGATATGTAGCCCTARGATTTTATAAAACCAGCTATTCCAGAACATTTGAAATCGTCTATTGTTAGATTTTCAAAGGGGTTATGGTTGCAAAAAGTGAATACGGCCTCATGGAAAATAGTTTTGCAGCACAACGTGGAAGTGAAAAGGCTGATACAGTACTCTGGAAGAATAAAAAAGACAACTGCAAAACTTTTTATTTATTTGTGATTGCATATTCTGATATTTTCAGAACGATCGGAGGTACCATCTAATGGACGATATGATTCTAATCCCAGAGGACCTAATATATTTCAAAATATCAAACAAAAAAAAAGGAAAATTATCAGAGAAAATATTAAAATAACCTACAGAGAGCCTCAACTCCTGTAGACTAAACCACCCGGCCCTAGTTCCTAGAAACTGATAACGGAAACTGCTGAATCTGTGCATTTTCTCCTCTCTCTTATGATACATGATATCTATTTTTGATCAGAAAGTGTGAACCCGAAGGCTAGTGCACACTGAACTTGCTCTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 368 129</canonical_bands>
                <polymorphic_bands>871 129</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGTTGTGGTGAGTGATAAGATT</pcr_primer_p1>
		<pcr_primer_p2>CAGAGTACTGTATCAGCCTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGTTGTGGTGAGTGATAAGATTAAAAGAGGAGTGATAAGACCAGCGAAAGTTCAAAAATATAATATAGTGAGCTAGAGAGCAAAGTGATATGTAGCCCTAAGATTTTATAAAACCAGCTATTCCAGAACATTTGAAATCGTCTATTGTTAGATTTTCAAAGGGGTTATGGTTGCAAAAAGTGAATACGGCCTCATGGAAAATAGTTTTGCAGCACAACGTGGAAGTGAAAAGGCTGATACAGTACTCTG</canonical_amplicon>
		<polymorphic_amplicon>GTGTTGTGGTGAGTGATAAGATTAAAAGAGGAGTGATAAGACCAGCGAAAGTTCAAAAATATAATATAGTGAGCTAGAGAGCAAAGTGATATGTAGCCCTARGATTTTATAAAACCAGCTATTCCAGAACATTTGAAATCGTCTATTGTTAGATTTTCAAAGGGGTTATGGTTGCAAAAAGTGAATACGGCCTCATGGAAAATAGTTTTGCAGCACAACGTGGAAGTGAAAAGGCTGATACAGTACTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17466</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>128231</contig_pos>
        <strand>+</strand>
        <context>RGATTTTATA[A/C]AACCAGCTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAATATAGTGAGCTAGAGAGCAAAGTGATATGTAGCCCTAAGATTTTATA</left_flank>
        <right_flank>AACCAGCTATTCCAGAACATTTGAAATCGTCTATTGTTAGATTTTCAAAG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTAAATTCAAGTTGATTAAACAAAAATAACAGAATGGGACAAAAACTGAAACGAGGAGTACTTATAATTGAAGAATTCGTACAGAAAGAATGTGACACCAAAACGAGGAACAAGTTTCTCAGGGAACAATGACCGAAAGTGTCTAAAAACAAAATGATGATAAAATCTTTGTGCCCTTTTATACAAACAGTTGTTGCTGCTGTCCTCGTGGCAAACCAGGTCAGTGGGAGGAGCCAATTGTTTGTACAAGCAATGTTCGGAGCAACACTACAGAAGTTATATCCAGATGTTCAGAAGGAGCAAAAAAGGGGAGAAACCCCGTAAAGTTGTTGTGTGTATGTTTTGAATTGACCAGAAGAGGGAGAGGACGTACCGAACTCGCCTATTGTGTTGTGGTGAGTGATAAGATTAAAAGAGGAGTGATAAGACCAGCGAAAGTTCAAAAATATAATATAGTGAGCTAGAGAGCAAAGTGATATGTAGCCCTAAGATTTTATAAAACCAGCTATTCCAGAACATTTGAAATCGTCTATTGTTAGATTTTCAAAGGGGTTATGGTTGCAAAAAGTGAATACGGCCTCATGGAAAATAGTTTTGCAGCACAACGTGGAAGTGAAAAGGCTGATACAGTACTCTGGAAGAATAAAAAAGACAACTGCAAAACTTTTTATTTATTTGTGATTGCATATTCTGATATTTTCAGAACGATCGGAGGTACCATCTAATGGACGATATGATTCTAATCCCAGAGGACCTAATATATTTCAAAATATCAAACAAAAAAAAAGGAAAATTATCAGAGAAAATATTAAAATAACCTACAGAGAGCCTCAACTCCTGTAGACTAAACCACCCGGCCCTAGTTCCTAGAAACTGATAACGGAAACTGCTGAATCTGTGCATTTTCTCCTCTCTCTTATGATACATGATATCTATTTTTGATCAGAAAGTGTGAACCCGAAGGCTAGTGCACACTGAACTTGCTCTTGTTCTCTTTCT</canonical>
            <polymorphic>ATTAAATTCAAGTTGATTAAACAAAAATAACAGAATGGGACAAAAACTGAAACGAGGAGTACTTATAATTGAAGAATTCGTACAGAAAGAATGTGACACCAAAACGAGGAACAAGTTTCTCAGGGAACAATGACCGAAAGTGTCTAAAAACAAAATGATGATAAAATCTTTGTGCCCTTTTATACAAACAGTTGTTGCTGCTGTCCTCGTGGCAAACCAGGTCAGTGGGAGGAGCCAATTGTTTGTACAAGCAATGTTCGGAGCAACACTACAGAAGTTATATCCAGATGTTCAGAAGGAGCAAAAAAGGGGAGAAACCCCGTAAAGTTGTTGTGTGTATGTTTTGAATTGACCAGAAGAGGGAGAGGACGTACCGAACTCGCCTATTGTGTTGTGGTGAGTGATAAGATTAAAAGAGGAGTGATAAGACCAGCGAAAGTTCAAAAATATAATATAGTGAGCTAGAGAGCAAAGTGATATGTAGCCCTAAGATTTTATAMAACCAGCTATTCCAGAACATTTGAAATCGTCTATTGTTAGATTTTCAAAGGGGTTATGGTTGCAAAAAGTGAATACGGCCTCATGGAAAATAGTTTTGCAGCACAACGTGGAAGTGAAAAGGCTGATACAGTACTCTGGAAGAATAAAAAAGACAACTGCAAAACTTTTTATTTATTTGTGATTGCATATTCTGATATTTTCAGAACGATCGGAGGTACCATCTAATGGACGATATGATTCTAATCCCAGAGGACCTAATATATTTCAAAATATCAAACAAAAAAAAAGGAAAATTATCAGAGAAAATATTAAAATAACCTACAGAGAGCCTCAACTCCTGTAGACTAAACCACCCGGCCCTAGTTCCTAGAAACTGATAACGGAAACTGCTGAATCTGTGCATTTTCTCCTCTCTCTTATGATACATGATATCTATTTTTGATCAGAAAGTGTGAACCCGAAGGCTAGTGCACACTGAACTTGCTCTTGTTCTCTTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 432 65</canonical_bands>
                <polymorphic_bands>935 65</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGTTGTGGTGAGTGATAAGATT</pcr_primer_p1>
		<pcr_primer_p2>CAGAGTACTGTATCAGCCTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGTTGTGGTGAGTGATAAGATTAAAAGAGGAGTGATAAGACCAGCGAAAGTTCAAAAATATAATATAGTGAGCTAGAGAGCAAAGTGATATGTAGCCCTAAGATTTTATAAAACCAGCTATTCCAGAACATTTGAAATCGTCTATTGTTAGATTTTCAAAGGGGTTATGGTTGCAAAAAGTGAATACGGCCTCATGGAAAATAGTTTTGCAGCACAACGTGGAAGTGAAAAGGCTGATACAGTACTCTG</canonical_amplicon>
		<polymorphic_amplicon>GTGTTGTGGTGAGTGATAAGATTAAAAGAGGAGTGATAAGACCAGCGAAAGTTCAAAAATATAATATAGTGAGCTAGAGAGCAAAGTGATATGTAGCCCTAAGATTTTATAMAACCAGCTATTCCAGAACATTTGAAATCGTCTATTGTTAGATTTTCAAAGGGGTTATGGTTGCAAAAAGTGAATACGGCCTCATGGAAAATAGTTTTGCAGCACAACGTGGAAGTGAAAAGGCTGATACAGTACTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17467</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>128249</contig_pos>
        <strand>+</strand>
        <context>TATTCCAGAA[A/C]ATTTGAAATC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGCAAAGTGATATGTAGCCCTAAGATTTTATAAAACCAGCTATTCCAGAA</left_flank>
        <right_flank>ATTTGAAATCGTCTATTGTTAGATTTTCAAAGGGGTTATGGTTGCAAAAA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACAAAAATAACAGAATGGGACAAAAACTGAAACGAGGAGTACTTATAATTGAAGAATTCGTACAGAAAGAATGTGACACCAAAACGAGGAACAAGTTTCTCAGGGAACAATGACCGAAAGTGTCTAAAAACAAAATGATGATAAAATCTTTGTGCCCTTTTATACAAACAGTTGTTGCTGCTGTCCTCGTGGCAAACCAGGTCAGTGGGAGGAGCCAATTGTTTGTACAAGCAATGTTCGGAGCAACACTACAGAAGTTATATCCAGATGTTCAGAAGGAGCAAAAAAGGGGAGAAACCCCGTAAAGTTGTTGTGTGTATGTTTTGAATTGACCAGAAGAGGGAGAGGACGTACCGAACTCGCCTATTGTGTTGTGGTGAGTGATAAGATTAAAAGAGGAGTGATAAGACCAGCGAAAGTTCAAAAATATAATATAGTGAGCTAGAGAGCAAAGTGATATGTAGCCCTAAGATTTTATAAAACCAGCTATTCCAGAACATTTGAAATCGTCTATTGTTAGATTTTCAAAGGGGTTATGGTTGCAAAAAGTGAATACGGCCTCATGGAAAATAGTTTTGCAGCACAACGTGGAAGTGAAAAGGCTGATACAGTACTCTGGAAGAATAAAAAAGACAACTGCAAAACTTTTTATTTATTTGTGATTGCATATTCTGATATTTTCAGAACGATCGGAGGTACCATCTAATGGACGATATGATTCTAATCCCAGAGGACCTAATATATTTCAAAATATCAAACAAAAAAAAAGGAAAATTATCAGAGAAAATATTAAAATAACCTACAGAGAGCCTCAACTCCTGTAGACTAAACCACCCGGCCCTAGTTCCTAGAAACTGATAACGGAAACTGCTGAATCTGTGCATTTTCTCCTCTCTCTTATGATACATGATATCTATTTTTGATCAGAAAGTGTGAACCCGAAGGCTAGTGCACACTGAACTTGCTCTTGTTCTCTTTCTTGCCCATCTCATCAATTT</canonical>
            <polymorphic>AAACAAAAATAACAGAATGGGACAAAAACTGAAACGAGGAGTACTTATAATTGAAGAATTCGTACAGAAAGAATGTGACACCAAAACGAGGAACAAGTTTCTCAGGGAACAATGACCGAAAGTGTCTAAAAACAAAATGATGATAAAATCTTTGTGCCCTTTTATACAAACAGTTGTTGCTGCTGTCCTCGTGGCAAACCAGGTCAGTGGGAGGAGCCAATTGTTTGTACAAGCAATGTTCGGAGCAACACTACAGAAGTTATATCCAGATGTTCAGAAGGAGCAAAAAAGGGGAGAAACCCCGTAAAGTTGTTGTGTGTATGTTTTGAATTGACCAGAAGAGGGAGAGGACGTACCGAACTCGCCTATTGTGTTGTGGTGAGTGATAAGATTAAAAGAGGAGTGATAAGACCAGCGAAAGTTCAAAAATATAATATAGTGAGCTAGAGAGCAAAGTGATATGTAGCCCTAAGATTTTATAAAACCAGCTATTCCAGAAMATTTGAAATCGTCTATTGTTAGATTTTCAAAGGGGTTATGGTTGCAAAAAGTGAATACGGCCTCATGGAAAATAGTTTTGCAGCACAACGTGGAAGTGAAAAGGCTGATACAGTACTCTGGAAGAATAAAAAAGACAACTGCAAAACTTTTTATTTATTTGTGATTGCATATTCTGATATTTTCAGAACGATCGGAGGTACCATCTAATGGACGATATGATTCTAATCCCAGAGGACCTAATATATTTCAAAATATCAAACAAAAAAAAAGGAAAATTATCAGAGAAAATATTAAAATAACCTACAGAGAGCCTCAACTCCTGTAGACTAAACCACCCGGCCCTAGTTCCTAGAAACTGATAACGGAAACTGCTGAATCTGTGCATTTTCTCCTCTCTCTTATGATACATGATATCTATTTTTGATCAGAAAGTGTGAACCCGAAGGCTAGTGCACACTGAACTTGCTCTTGTTCTCTTTCTTGCCCATCTCATCAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTTGTGGTGAGTGATAAGATT</pcr_primer_p1>
		<pcr_primer_p2>CAGAGTACTGTATCAGCCTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGTTGTGGTGAGTGATAAGATTAAAAGAGGAGTGATAAGACCAGCGAAAGTTCAAAAATATAATATAGTGAGCTAGAGAGCAAAGTGATATGTAGCCCTAAGATTTTATAAAACCAGCTATTCCAGAACATTTGAAATCGTCTATTGTTAGATTTTCAAAGGGGTTATGGTTGCAAAAAGTGAATACGGCCTCATGGAAAATAGTTTTGCAGCACAACGTGGAAGTGAAAAGGCTGATACAGTACTCTG</canonical_amplicon>
		<polymorphic_amplicon>GTGTTGTGGTGAGTGATAAGATTAAAAGAGGAGTGATAAGACCAGCGAAAGTTCAAAAATATAATATAGTGAGCTAGAGAGCAAAGTGATATGTAGCCCTAAGATTTTATAAAACCAGCTATTCCAGAAMATTTGAAATCGTCTATTGTTAGATTTTCAAAGGGGTTATGGTTGCAAAAAGTGAATACGGCCTCATGGAAAATAGTTTTGCAGCACAACGTGGAAGTGAAAAGGCTGATACAGTACTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17468</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>129448</contig_pos>
        <strand>+</strand>
        <context>TTAAATTGAA[A/T]TTTTATGCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACGCTTCCTTCTCTCGAAAATAAATATGTATGTCTGAAATTAAATTGAA</left_flank>
        <right_flank>TTTTATGCTTTCAAAAATAACGATTTTTCGTTATTTTCCGAGGGAAACCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATTTGTGCTTTTTTGACGACTTGAGCAAATATCATTCGTTGTTCACAACTTCCGAGCATACGTAAAAAAAACAATTGACCGATATTTTGAAAGATGAAATAAATGTTTCGGTTGTTTAGAATCATGTCACAGGGATGAGGATTCATTTTCAGCAACTCAACTTTTCCCAGTTTTTATGTAATTTTCCTTGTTTATTCGAAAATGAAAATTATTAAATGTTAAAAAATTCAAATAAATTATTTCTTTTTTTGGACCCTAATAAATTGTTTTCTAGGTTTTGATTAAAAATTACAAGAATTTCCAGTTTTATACTTACAAAAATTTCCGGCCCATCATATTTCTATTTTCTTTTGTCATTAAAAGTTTCAAACCTAGGAAATCATTTTTTGCCAGTTTCCTTTTCAAAAGTTGAACTCAAAACTAGGAATAACTACAAACTCTATGTACAACGCTTCCTTCTCTCGAAAATAAATATGTATGTCTGAAATTAAATTGAATTTTTATGCTTTCAAAAATAACGATTTTTCGTTATTTTCCGAGGGAAACCACATTGAAAAATCCGTTTTCTTCTTTAAAACCAAAATTGTTTATCTGGTGACGTCAGACATCCAATAATTGGTTCAATCGAAGAGATAACTTGTCACAATGTGACATCTCATATATGGTATTTTGTTAAACCGGTCCATTGTTCTTCTGGGAAATCTAACTATATTTTATGTTCACTCTTACATAATGAACATCTTTAATAATTATTGTTTTTCCGATGATTAAAAAACGAGCAGTCAAGTTTCTGTTTATGTTTGCATTACTCATTCACACAGAATGTTTCACATTTTTTCTATTCTGTATCAAAGAGAATACCAAAAAAAGCGGAAGAAACTCATTGAAAACAACAACAAACTAGTATAAAACTAGTGGCAAATGATACTACAGCAAATCCTAACACAATGATCAAAAAAGTGTTGTTTCTATCCTTATTGGTAGAACTTGTATTAGGA</canonical>
            <polymorphic>ATATTTGTGCTTTTTTGACGACTTGAGCAAATATCATTCGTTGTTCACAACTTCCGAGCATACGTAAAAAAAACAATTGACCGATATTTTGAAAGATGAAATAAATGTTTCGGTTGTTTAGAATCATGTCACAGGGATGAGGATTCATTTTCAGCAACTCAACTTTTCCCAGTTTTTATGTAATTTTCCTTGTTTATTCGAAAATGAAAATTATTAAATGTTAAAAAATTCAAATAAATTATTTCTTTTTTTGGACCCTAATAAATTGTTTTCTAGGTTTTGATTAAAAATTACAAGAATTTCCAGTTTTATACTTACAAAAATTTCCGGCCCATCATATTTCTATTTTCTTTTGTCATTAAAAGTTTCAAACCTAGGAAATCATTTTTTGCCAGTTTCCTTTTCAAAAGTTGAACTCAAAACTAGGAATAACTACAAACTCTATGTACAACGCTTCCTTCTCTCGAAAATAAATATGTATGTCTGAAATTAAATTGAAWTTTTATGCTTTCAAAAATAACGATTTTTCGTTATTTTCCGAGGGAAACCACATTGAAAAATCCGTTTTCTTCTTTAAAACCAAAATTGTTTATCTGGTGACGTCAGACATCCAATAATTGGTTCAATCGAAGAGATAACTTGTCACAATGTGACATCTCATATATGGTATTTTGTTAAACCGGTCCATTGTTCTTCTGGGAAATCTAACTATATTTTATGTTCACTCTTACATAATGAACATCTTTAATAATTATTGTTTTTCCGATGATTAAAAAACGAGCAGTCAAGTTTCTGTTTATGTTTGCATTACTCATTCACACAGAATGTTTCACATTTTTTCTATTCTGTATCAAAGAGAATACCAAAAAAAGCGGAAGAAACTCATTGAAAACAACAACAAACTAGTATAAAACTAGTGGCAAATGATACTACAGCAAATCCTAACACAATGATCAAAAAAGTGTTGTTTCTATCCTTATTGGTAGAACTTGTATTAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>503 226 176 71 24</canonical_bands>
                <polymorphic_bands>679 226 71 24</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>251 166 134 107 86 74 32 27 27 25 24 18 10 9 5 5</canonical_bands>
                <polymorphic_bands>251 166 134 107 91 74 32 27 27 25 24 18 10 9 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAAAAGTTGAACTCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GTGACAAGTTATCTCTTCGATTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAAAAGTTGAACTCAAAACTAGGAATAACTACAAACTCTATGTACAACGCTTCCTTCTCTCGAAAATAAATATGTATGTCTGAAATTAAATTGAATTTTTATGCTTTCAAAAATAACGATTTTTCGTTATTTTCCGAGGGAAACCACATTGAAAAATCCGTTTTCTTCTTTAAAACCAAAATTGTTTATCTGGTGACGTCAGACATCCAATAATTGGTTCAATCGAAGAGATAACTTGTCAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAAAAGTTGAACTCAAAACTAGGAATAACTACAAACTCTATGTACAACGCTTCCTTCTCTCGAAAATAAATATGTATGTCTGAAATTAAATTGAAWTTTTATGCTTTCAAAAATAACGATTTTTCGTTATTTTCCGAGGGAAACCACATTGAAAAATCCGTTTTCTTCTTTAAAACCAAAATTGTTTATCTGGTGACGTCAGACATCCAATAATTGGTTCAATCGAAGAGATAACTTGTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17469</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>129520</contig_pos>
        <strand>+</strand>
        <context>CCGTTTTCTT[C/T]TTTAAAACCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTTTTCGTTATTTTCCGAGGGAAACCACATTGAAAAATCCGTTTTCTT</left_flank>
        <right_flank>TTTAAAACCAAAATTGTTTATCTGGTGACGTCAGACATCCAATAATTGGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAATTGACCGATATTTTGAAAGATGAAATAAATGTTTCGGTTGTTTAGAATCATGTCACAGGGATGAGGATTCATTTTCAGCAACTCAACTTTTCCCAGTTTTTATGTAATTTTCCTTGTTTATTCGAAAATGAAAATTATTAAATGTTAAAAAATTCAAATAAATTATTTCTTTTTTTGGACCCTAATAAATTGTTTTCTAGGTTTTGATTAAAAATTACAAGAATTTCCAGTTTTATACTTACAAAAATTTCCGGCCCATCATATTTCTATTTTCTTTTGTCATTAAAAGTTTCAAACCTAGGAAATCATTTTTTGCCAGTTTCCTTTTCAAAAGTTGAACTCAAAACTAGGAATAACTACAAACTCTATGTACAACGCTTCCTTCTCTCGAAAATAAATATGTATGTCTGAAATTAAATTGAATTTTTATGCTTTCAAAAATAACGATTTTTCGTTATTTTCCGAGGGAAACCACATTGAAAAATCCGTTTTCTTCTTTAAAACCAAAATTGTTTATCTGGTGACGTCAGACATCCAATAATTGGTTCAATCGAAGAGATAACTTGTCACAATGTGACATCTCATATATGGTATTTTGTTAAACCGGTCCATTGTTCTTCTGGGAAATCTAACTATATTTTATGTTCACTCTTACATAATGAACATCTTTAATAATTATTGTTTTTCCGATGATTAAAAAACGAGCAGTCAAGTTTCTGTTTATGTTTGCATTACTCATTCACACAGAATGTTTCACATTTTTTCTATTCTGTATCAAAGAGAATACCAAAAAAAGCGGAAGAAACTCATTGAAAACAACAACAAACTAGTATAAAACTAGTGGCAAATGATACTACAGCAAATCCTAACACAATGATCAAAAAAGTGTTGTTTCTATCCTTATTGGTAGAACTTGTATTAGGAGCTCCATTAAGCCATGATGATGTCATTTCGCCAGAATTTCGTCAGGTATGAACTATGTGAAAATACTGAAAG</canonical>
            <polymorphic>ACAATTGACCGATATTTTGAAAGATGAAATAAATGTTTCGGTTGTTTAGAATCATGTCACAGGGATGAGGATTCATTTTCAGCAACTCAACTTTTCCCAGTTTTTATGTAATTTTCCTTGTTTATTCGAAAATGAAAATTATTAAATGTTAAAAAATTCAAATAAATTATTTCTTTTTTTGGACCCTAATAAATTGTTTTCTAGGTTTTGATTAAAAATTACAAGAATTTCCAGTTTTATACTTACAAAAATTTCCGGCCCATCATATTTCTATTTTCTTTTGTCATTAAAAGTTTCAAACCTAGGAAATCATTTTTTGCCAGTTTCCTTTTCAAAAGTTGAACTCAAAACTAGGAATAACTACAAACTCTATGTACAACGCTTCCTTCTCTCGAAAATAAATATGTATGTCTGAAATTAAATTGAATTTTTATGCTTTCAAAAATAACGATTTTTCGTTATTTTCCGAGGGAAACCACATTGAAAAATCCGTTTTCTTYTTTAAAACCAAAATTGTTTATCTGGTGACGTCAGACATCCAATAATTGGTTCAATCGAAGAGATAACTTGTCACAATGTGACATCTCATATATGGTATTTTGTTAAACCGGTCCATTGTTCTTCTGGGAAATCTAACTATATTTTATGTTCACTCTTACATAATGAACATCTTTAATAATTATTGTTTTTCCGATGATTAAAAAACGAGCAGTCAAGTTTCTGTTTATGTTTGCATTACTCATTCACACAGAATGTTTCACATTTTTTCTATTCTGTATCAAAGAGAATACCAAAAAAAGCGGAAGAAACTCATTGAAAACAACAACAAACTAGTATAAAACTAGTGGCAAATGATACTACAGCAAATCCTAACACAATGATCAAAAAAGTGTTGTTTCTATCCTTATTGGTAGAACTTGTATTAGGAGCTCCATTAAGCCATGATGATGTCATTTCGCCAGAATTTCGTCAGGTATGAACTATGTGAAAATACTGAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAAAAGTTGAACTCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GTGACAAGTTATCTCTTCGATTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAAAAGTTGAACTCAAAACTAGGAATAACTACAAACTCTATGTACAACGCTTCCTTCTCTCGAAAATAAATATGTATGTCTGAAATTAAATTGAATTTTTATGCTTTCAAAAATAACGATTTTTCGTTATTTTCCGAGGGAAACCACATTGAAAAATCCGTTTTCTTCTTTAAAACCAAAATTGTTTATCTGGTGACGTCAGACATCCAATAATTGGTTCAATCGAAGAGATAACTTGTCAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAAAAGTTGAACTCAAAACTAGGAATAACTACAAACTCTATGTACAACGCTTCCTTCTCTCGAAAATAAATATGTATGTCTGAAATTAAATTGAATTTTTATGCTTTCAAAAATAACGATTTTTCGTTATTTTCCGAGGGAAACCACATTGAAAAATCCGTTTTCTTYTTTAAAACCAAAATTGTTTATCTGGTGACGTCAGACATCCAATAATTGGTTCAATCGAAGAGATAACTTGTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17470</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>131375</contig_pos>
        <strand>+</strand>
        <context>GATTTTATTC[A/T]TTTTTCTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCCGTTATTCCATGTGTCCACTTTCCAACTTCAAATATTGATTTTATTC</left_flank>
        <right_flank>TTTTTCTTGAAATGTAAAATGTCCTTGAATGTACTCGACCTCGAAGAACT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTCGCCGTTTCGGCCACGTGGATGCTCGCGGGAAGGACTATAAATTCAAATTTACGGAATCTCATAATGTTACTGAGAATCTTCTTCTCCGATCTTTTATTGCATGGACCAAAGGGACACCTTCCAATCAGTTTGCAATTCAAACTATCCGATACTATGGAGAATATTGACAACTTGGAATGACAATTGTTTCTAACTACTTATCTCTTTGTTAAATAAACTAATTTCATGAGACTATAGAATTATCTAGTTAGACTGAAAAACAGATTTCCATGATATTGAAGTTTGAAGTGGTCAATTTAGATTGTACATTTCAAATTGCTCATAAATTTACAGCTTGGCTATAAGTAATTGTTTTTTCTAAAATTAAAATGTTCACAGGCTCACATGAACTTCAGTGCATGCAATTCCAATCAAAAACCCTCACAAAAGTTTTCTTATCAGTATTTCCGTTATTCCATGTGTCCACTTTCCAACTTCAAATATTGATTTTATTCTTTTTTCTTGAAATGTAAAATGTCCTTGAATGTACTCGACCTCGAAGAACTTCATACTCCAGAGACTAGAACAGAGGAATGCGAGGTGAAAAAGGGAAAGAACGGAAACGGGTTTAGTGAGTTGAAAGTTAGATGCATATGACATTTAATACAACTTTTCAGCACTCCGTTCATATTTCGTAACATTTGTTGCCTTCCAGTTTGCCGTGTATTTTTGATTTTGGGGTTACTAAACTACAAAAAATGCTCACCGGTACCACGAATCCGAATTTGGATGATTTTGGTTGGAGCACTTTTGTGTTTGGAAAGAGGAATAGCCATTCGACGGCTGATTTCAAAATCAATATTTGATAAAGAAGATATTGAATTATCAGATCATGAAGCCTGTTTCAGACGGGAAACAAAAAGGAAACAATTGAAATCAAGACCGGTATCCCAGGATTTCATATGGCTGCTTTTAGTGGTTTTGTGAGTTTTCTTTCAAAAAATTTCTAGATTTTA</canonical>
            <polymorphic>GCTTCGCCGTTTCGGCCACGTGGATGCTCGCGGGAAGGACTATAAATTCAAATTTACGGAATCTCATAATGTTACTGAGAATCTTCTTCTCCGATCTTTTATTGCATGGACCAAAGGGACACCTTCCAATCAGTTTGCAATTCAAACTATCCGATACTATGGAGAATATTGACAACTTGGAATGACAATTGTTTCTAACTACTTATCTCTTTGTTAAATAAACTAATTTCATGAGACTATAGAATTATCTAGTTAGACTGAAAAACAGATTTCCATGATATTGAAGTTTGAAGTGGTCAATTTAGATTGTACATTTCAAATTGCTCATAAATTTACAGCTTGGCTATAAGTAATTGTTTTTTCTAAAATTAAAATGTTCACAGGCTCACATGAACTTCAGTGCATGCAATTCCAATCAAAAACCCTCACAAAAGTTTTCTTATCAGTATTTCCGTTATTCCATGTGTCCACTTTCCAACTTCAAATATTGATTTTATTCWTTTTTCTTGAAATGTAAAATGTCCTTGAATGTACTCGACCTCGAAGAACTTCATACTCCAGAGACTAGAACAGAGGAATGCGAGGTGAAAAAGGGAAAGAACGGAAACGGGTTTAGTGAGTTGAAAGTTAGATGCATATGACATTTAATACAACTTTTCAGCACTCCGTTCATATTTCGTAACATTTGTTGCCTTCCAGTTTGCCGTGTATTTTTGATTTTGGGGTTACTAAACTACAAAAAATGCTCACCGGTACCACGAATCCGAATTTGGATGATTTTGGTTGGAGCACTTTTGTGTTTGGAAAGAGGAATAGCCATTCGACGGCTGATTTCAAAATCAATATTTGATAAAGAAGATATTGAATTATCAGATCATGAAGCCTGTTTCAGACGGGAAACAAAAAGGAAACAATTGAAATCAAGACCGGTATCCCAGGATTTCATATGGCTGCTTTTAGTGGTTTTGTGAGTTTTCTTTCAAAAAATTTCTAGATTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATAAATTTACAGCTTGGCTAT</pcr_primer_p1>
		<pcr_primer_p2>TCTGTTCTAGTCTCTGGAGTATGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCATAAATTTACAGCTTGGCTATAAGTAATTGTTTTTTCTAAAATTAAAATGTTCACAGGCTCACATGAACTTCAGTGCATGCAATTCCAATCAAAAACCCTCACAAAAGTTTTCTTATCAGTATTTCCGTTATTCCATGTGTCCACTTTCCAACTTCAAATATTGATTTTATTCTTTTTTCTTGAAATGTAAAATGTCCTTGAATGTACTCGACCTCGAAGAACTTCATACTCCAGAGACTAGAACAGA</canonical_amplicon>
		<polymorphic_amplicon>TCATAAATTTACAGCTTGGCTATAAGTAATTGTTTTTTCTAAAATTAAAATGTTCACAGGCTCACATGAACTTCAGTGCATGCAATTCCAATCAAAAACCCTCACAAAAGTTTTCTTATCAGTATTTCCGTTATTCCATGTGTCCACTTTCCAACTTCAAATATTGATTTTATTCWTTTTTCTTGAAATGTAAAATGTCCTTGAATGTACTCGACCTCGAAGAACTTCATACTCCAGAGACTAGAACAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17471</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>131300</contig_pos>
        <strand>+</strand>
        <context>ATCAAAAACC[A/C]TCACAAAAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGTTCACAGGCTCACATGAACTTCAGTGCATGCAATTCCAATCAAAAACC</left_flank>
        <right_flank>TCACAAAAGTTTTCTTATCAGTATTTCCGTTATTCCATGTGTCCACTTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAACTCACAGAAACTCAACTAGATTCTTTCGTGGTTTGTAAACCTACTATTCTGTCAAGGATCTGTCAATTTCAGCTTCGCCGTTTCGGCCACGTGGATGCTCGCGGGAAGGACTATAAATTCAAATTTACGGAATCTCATAATGTTACTGAGAATCTTCTTCTCCGATCTTTTATTGCATGGACCAAAGGGACACCTTCCAATCAGTTTGCAATTCAAACTATCCGATACTATGGAGAATATTGACAACTTGGAATGACAATTGTTTCTAACTACTTATCTCTTTGTTAAATAAACTAATTTCATGAGACTATAGAATTATCTAGTTAGACTGAAAAACAGATTTCCATGATATTGAAGTTTGAAGTGGTCAATTTAGATTGTACATTTCAAATTGCTCATAAATTTACAGCTTGGCTATAAGTAATTGTTTTTTCTAAAATTAAAATGTTCACAGGCTCACATGAACTTCAGTGCATGCAATTCCAATCAAAAACCCTCACAAAAGTTTTCTTATCAGTATTTCCGTTATTCCATGTGTCCACTTTCCAACTTCAAATATTGATTTTATTCTTTTTTCTTGAAATGTAAAATGTCCTTGAATGTACTCGACCTCGAAGAACTTCATACTCCAGAGACTAGAACAGAGGAATGCGAGGTGAAAAAGGGAAAGAACGGAAACGGGTTTAGTGAGTTGAAAGTTAGATGCATATGACATTTAATACAACTTTTCAGCACTCCGTTCATATTTCGTAACATTTGTTGCCTTCCAGTTTGCCGTGTATTTTTGATTTTGGGGTTACTAAACTACAAAAAATGCTCACCGGTACCACGAATCCGAATTTGGATGATTTTGGTTGGAGCACTTTTGTGTTTGGAAAGAGGAATAGCCATTCGACGGCTGATTTCAAAATCAATATTTGATAAAGAAGATATTGAATTATCAGATCATGAAGCCTGTTTCAGACGGGAAACAAAAAGGAAACAATTGAAATCAAG</canonical>
            <polymorphic>GGAACTCACAGAAACTCAACTAGATTCTTTCGTGGTTTGTAAACCTACTATTCTGTCAAGGATCTGTCAATTTCAGCTTCGCCGTTTCGGCCACGTGGATGCTCGCGGGAAGGACTATAAATTCAAATTTACGGAATCTCATAATGTTACTGAGAATCTTCTTCTCCGATCTTTTATTGCATGGACCAAAGGGACACCTTCCAATCAGTTTGCAATTCAAACTATCCGATACTATGGAGAATATTGACAACTTGGAATGACAATTGTTTCTAACTACTTATCTCTTTGTTAAATAAACTAATTTCATGAGACTATAGAATTATCTAGTTAGACTGAAAAACAGATTTCCATGATATTGAAGTTTGAAGTGGTCAATTTAGATTGTACATTTCAAATTGCTCATAAATTTACAGCTTGGCTATAAGTAATTGTTTTTTCTAAAATTAAAATGTTCACAGGCTCACATGAACTTCAGTGCATGCAATTCCAATCAAAAACCMTCACAAAAGTTTTCTTATCAGTATTTCCGTTATTCCATGTGTCCACTTTCCAACTTCAAATATTGATTTTATTCTTTTTTCTTGAAATGTAAAATGTCCTTGAATGTACTCGACCTCGAAGAACTTCATACTCCAGAGACTAGAACAGAGGAATGCGAGGTGAAAAAGGGAAAGAACGGAAACGGGTTTAGTGAGTTGAAAGTTAGATGCATATGACATTTAATACAACTTTTCAGCACTCCGTTCATATTTCGTAACATTTGTTGCCTTCCAGTTTGCCGTGTATTTTTGATTTTGGGGTTACTAAACTACAAAAAATGCTCACCGGTACCACGAATCCGAATTTGGATGATTTTGGTTGGAGCACTTTTGTGTTTGGAAAGAGGAATAGCCATTCGACGGCTGATTTCAAAATCAATATTTGATAAAGAAGATATTGAATTATCAGATCATGAAGCCTGTTTCAGACGGGAAACAAAAAGGAAACAATTGAAATCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTTTGAAGTGGTCAATTTAG</pcr_primer_p1>
		<pcr_primer_p2>ATTCAAGGACATTTTACATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAGTTTGAAGTGGTCAATTTAGATTGTACATTTCAAATTGCTCATAAATTTACAGCTTGGCTATAAGTAATTGTTTTTTCTAAAATTAAAATGTTCACAGGCTCACATGAACTTCAGTGCATGCAATTCCAATCAAAAACCCTCACAAAAGTTTTCTTATCAGTATTTCCGTTATTCCATGTGTCCACTTTCCAACTTCAAATATTGATTTTATTCTTTTTTCTTGAAATGTAAAATGTCCTTGAAT</canonical_amplicon>
		<polymorphic_amplicon>GAAGTTTGAAGTGGTCAATTTAGATTGTACATTTCAAATTGCTCATAAATTTACAGCTTGGCTATAAGTAATTGTTTTTTCTAAAATTAAAATGTTCACAGGCTCACATGAACTTCAGTGCATGCAATTCCAATCAAAAACCMTCACAAAAGTTTTCTTATCAGTATTTCCGTTATTCCATGTGTCCACTTTCCAACTTCAAATATTGATTTTATTCTTTTTTCTTGAAATGTAAAATGTCCTTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17474</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>131486</contig_pos>
        <strand>+</strand>
        <context>ACGGAAACGG[A/G]TTTAGTGAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGACTAGAACAGAGGAATGCGAGGTGAAAAAGGGAAAGAACGGAAACGG</left_flank>
        <right_flank>TTTAGTGAGTTGAAAGTTAGATGCATATGACATTTAATACAACTTTTCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAGGGACACCTTCCAATCAGTTTGCAATTCAAACTATCCGATACTATGGAGAATATTGACAACTTGGAATGACAATTGTTTCTAACTACTTATCTCTTTGTTAAATAAACTAATTTCATGAGACTATAGAATTATCTAGTTAGACTGAAAAACAGATTTCCATGATATTGAAGTTTGAAGTGGTCAATTTAGATTGTACATTTCAAATTGCTCATAAATTTACAGCTTGGCTATAAGTAATTGTTTTTTCTAAAATTAAAATGTTCACAGGCTCACATGAACTTCAGTGCATGCAATTCCAATCAAAAACCCTCACAAAAGTTTTCTTATCAGTATTTCCGTTATTCCATGTGTCCACTTTCCAACTTCAAATATTGATTTTATTCTTTTTTCTTGAAATGTAAAATGTCCTTGAATGTACTCGACCTCGAAGAACTTCATACTCCAGAGACTAGAACAGAGGAATGCGAGGTGAAAAAGGGAAAGAACGGAAACGGGTTTAGTGAGTTGAAAGTTAGATGCATATGACATTTAATACAACTTTTCAGCACTCCGTTCATATTTCGTAACATTTGTTGCCTTCCAGTTTGCCGTGTATTTTTGATTTTGGGGTTACTAAACTACAAAAAATGCTCACCGGTACCACGAATCCGAATTTGGATGATTTTGGTTGGAGCACTTTTGTGTTTGGAAAGAGGAATAGCCATTCGACGGCTGATTTCAAAATCAATATTTGATAAAGAAGATATTGAATTATCAGATCATGAAGCCTGTTTCAGACGGGAAACAAAAAGGAAACAATTGAAATCAAGACCGGTATCCCAGGATTTCATATGGCTGCTTTTAGTGGTTTTGTGAGTTTTCTTTCAAAAAATTTCTAGATTTTAATTATAAAAACTCAGGATATAGAAATTTTTCAATTCACTTGCTTATGAGCTATTAATTTAAACTGTTACGGTTCCTATTTTCAGGTCAATGCTCAGTCTCACATGGCTTCT</canonical>
            <polymorphic>CAAAGGGACACCTTCCAATCAGTTTGCAATTCAAACTATCCGATACTATGGAGAATATTGACAACTTGGAATGACAATTGTTTCTAACTACTTATCTCTTTGTTAAATAAACTAATTTCATGAGACTATAGAATTATCTAGTTAGACTGAAAAACAGATTTCCATGATATTGAAGTTTGAAGTGGTCAATTTAGATTGTACATTTCAAATTGCTCATAAATTTACAGCTTGGCTATAAGTAATTGTTTTTTCTAAAATTAAAATGTTCACAGGCTCACATGAACTTCAGTGCATGCAATTCCAATCAAAAACCCTCACAAAAGTTTTCTTATCAGTATTTCCGTTATTCCATGTGTCCACTTTCCAACTTCAAATATTGATTTTATTCTTTTTTCTTGAAATGTAAAATGTCCTTGAATGTACTCGACCTCGAAGAACTTCATACTCCAGAGACTAGAACAGAGGAATGCGAGGTGAAAAAGGGAAAGAACGGAAACGGRTTTAGTGAGTTGAAAGTTAGATGCATATGACATTTAATACAACTTTTCAGCACTCCGTTCATATTTCGTAACATTTGTTGCCTTCCAGTTTGCCGTGTATTTTTGATTTTGGGGTTACTAAACTACAAAAAATGCTCACCGGTACCACGAATCCGAATTTGGATGATTTTGGTTGGAGCACTTTTGTGTTTGGAAAGAGGAATAGCCATTCGACGGCTGATTTCAAAATCAATATTTGATAAAGAAGATATTGAATTATCAGATCATGAAGCCTGTTTCAGACGGGAAACAAAAAGGAAACAATTGAAATCAAGACCGGTATCCCAGGATTTCATATGGCTGCTTTTAGTGGTTTTGTGAGTTTTCTTTCAAAAAATTTCTAGATTTTAATTATAAAAACTCAGGATATAGAAATTTTTCAATTCACTTGCTTATGAGCTATTAATTTAAACTGTTACGGTTCCTATTTTCAGGTCAATGCTCAGTCTCACATGGCTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTATTTCCGTTATTCCATGT</pcr_primer_p1>
		<pcr_primer_p2>CAACAAATGTTACGAAATATGAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGTATTTCCGTTATTCCATGTGTCCACTTTCCAACTTCAAATATTGATTTTATTCTTTTTTCTTGAAATGTAAAATGTCCTTGAATGTACTCGACCTCGAAGAACTTCATACTCCAGAGACTAGAACAGAGGAATGCGAGGTGAAAAAGGGAAAGAACGGAAACGGGTTTAGTGAGTTGAAAGTTAGATGCATATGACATTTAATACAACTTTTCAGCACTCCGTTCATATTTCGTAACATTTGTTG</canonical_amplicon>
		<polymorphic_amplicon>CAGTATTTCCGTTATTCCATGTGTCCACTTTCCAACTTCAAATATTGATTTTATTCTTTTTTCTTGAAATGTAAAATGTCCTTGAATGTACTCGACCTCGAAGAACTTCATACTCCAGAGACTAGAACAGAGGAATGCGAGGTGAAAAAGGGAAAGAACGGAAACGGRTTTAGTGAGTTGAAAGTTAGATGCATATGACATTTAATACAACTTTTCAGCACTCCGTTCATATTTCGTAACATTTGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17475</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>132681</contig_pos>
        <strand>+</strand>
        <context>AGATTTGCCT[G/T]GCTTTGACAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGGTCTATACTGTGTAGTTCTACTTCATACTTGAAAGTTCAGATTTGCCT</left_flank>
        <right_flank>GCTTTGACAATGTAGAGGAGCCAAAAGAAAAGATACTGACGATATCTTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCGTGGGGTTGATATTGGGGTTGCACAGCTGATGGTCTCTTGTTGCAACAGAAAAGTGTTTTGACTATAGCCATCATATTTCTCTTGTTGCAACTCAAATAAGATAGTTGCATTAAAACGGGTGTCACAATATTATCCACTGACATCAAGAAAAGAACAACAAAAAATGGTTGGAAATTATGAGCATGAATAAGAAAGCTAAGTGGAATAGTGATCTATAAAATAAGTTGAATAAATTACTATTAATAACACAACTTACTAATTTGAACAAAACTAAATTGAATGCCTGCCAAACGATATACCGTTCCGGATTACTGTATGAAGCACTTGCTCGTCGTTTCTTAATGCTTATCAGTAGAGGAATACACAAAAGTGACAATACAACATTAGAAATATTGAAGGCGATGAAAACCATCTGGAAAAGATTTCGTTCATTGTAAGCAGCAAAAGGTCTATACTGTGTAGTTCTACTTCATACTTGAAAGTTCAGATTTGCCTGGCTTTGACAATGTAGAGGAGCCAAAAGAAAAGATACTGACGATATCTTTTCCGGCAACCATTAAATAAATTAGATAAATCCAGTCATGTATAAACTTTTGAAAAGCTAATACAAATTGTTCAGTTGATGGAAAGAAGTGAGTGAAAAACTTAAAAAGAACCAAAAAAGCAGAGACAAACTGGAAGACTTGAATGGTAATGTGTATGATTAGGAAAGATAAAAAGGCAGGGACTGCCAAACCGATAATGATGAGTCTAAAATTTCAAAAAAATTTGAAAATGTTACAAAAGGATGTTTACGGTTGCTGCAAACCAACGTAGTACATGAAGCATAACATGATGCATATTATGAACAAGAAGAAGTAAATTTTCTTGACAATTTTGTAAAAATGTCGGGAATAAATAAAAACAGGAACTGTTCATCTCGTTTTTTATTTTTCCCGTTCACATAGATAAAAAAATGGAAATATAAAGATGAGGAGTAACAAAATGACAACAAAA</canonical>
            <polymorphic>TCCGTGGGGTTGATATTGGGGTTGCACAGCTGATGGTCTCTTGTTGCAACAGAAAAGTGTTTTGACTATAGCCATCATATTTCTCTTGTTGCAACTCAAATAAGATAGTTGCATTAAAACGGGTGTCACAATATTATCCACTGACATCAAGAAAAGAACAACAAAAAATGGTTGGAAATTATGAGCATGAATAAGAAAGCTAAGTGGAATAGTGATCTATAAAATAAGTTGAATAAATTACTATTAATAACACAACTTACTAATTTGAACAAAACTAAATTGAATGCCTGCCAAACGATATACCGTTCCGGATTACTGTATGAAGCACTTGCTCGTCGTTTCTTAATGCTTATCAGTAGAGGAATACACAAAAGTGACAATACAACATTAGAAATATTGAAGGCGATGAAAACCATCTGGAAAAGATTTCGTTCATTGTAAGCAGCAAAAGGTCTATACTGTGTAGTTCTACTTCATACTTGAAAGTTCAGATTTGCCTKGCTTTGACAATGTAGAGGAGCCAAAAGAAAAGATACTGACGATATCTTTTCCGGCAACCATTAAATAAATTAGATAAATCCAGTCATGTATAAACTTTTGAAAAGCTAATACAAATTGTTCAGTTGATGGAAAGAAGTGAGTGAAAAACTTAAAAAGAACCAAAAAAGCAGAGACAAACTGGAAGACTTGAATGGTAATGTGTATGATTAGGAAAGATAAAAAGGCAGGGACTGCCAAACCGATAATGATGAGTCTAAAATTTCAAAAAAATTTGAAAATGTTACAAAAGGATGTTTACGGTTGCTGCAAACCAACGTAGTACATGAAGCATAACATGATGCATATTATGAACAAGAAGAAGTAAATTTTCTTGACAATTTTGTAAAAATGTCGGGAATAAATAAAAACAGGAACTGTTCATCTCGTTTTTTATTTTTCCCGTTCACATAGATAAAAAAATGGAAATATAAAGATGAGGAGTAACAAAATGACAACAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>395 302 128 85 42 29 19</canonical_bands>
                <polymorphic_bands>395 321 128 85 42 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTAGAGGAATACACAAAAGTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAAAGTTTATACATGACTGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGTAGAGGAATACACAAAAGTGACAATACAACATTAGAAATATTGAAGGCGATGAAAACCATCTGGAAAAGATTTCGTTCATTGTAAGCAGCAAAAGGTCTATACTGTGTAGTTCTACTTCATACTTGAAAGTTCAGATTTGCCTGGCTTTGACAATGTAGAGGAGCCAAAAGAAAAGATACTGACGATATCTTTTCCGGCAACCATTAAATAAATTAGATAAATCCAGTCATGTATAAACTTTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>CAGTAGAGGAATACACAAAAGTGACAATACAACATTAGAAATATTGAAGGCGATGAAAACCATCTGGAAAAGATTTCGTTCATTGTAAGCAGCAAAAGGTCTATACTGTGTAGTTCTACTTCATACTTGAAAGTTCAGATTTGCCTKGCTTTGACAATGTAGAGGAGCCAAAAGAAAAGATACTGACGATATCTTTTCCGGCAACCATTAAATAAATTAGATAAATCCAGTCATGTATAAACTTTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17476</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>132656</contig_pos>
        <strand>+</strand>
        <context>AGTTCTMCTT[C/G]ATACTTGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GATTTCGTTCATTGTAAGCAGCAAAAGGTCTATACTGTGTAGTTCTACTT</left_flank>
        <right_flank>ATACTTGAAAGTTCAGATTTGCCTGGCTTTGACAATGTAGAGGAGCCAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTAATTTATGAATCTTCAGAACTTCCGTGGGGTTGATATTGGGGTTGCACAGCTGATGGTCTCTTGTTGCAACAGAAAAGTGTTTTGACTATAGCCATCATATTTCTCTTGTTGCAACTCAAATAAGATAGTTGCATTAAAACGGGTGTCACAATATTATCCACTGACATCAAGAAAAGAACAACAAAAAATGGTTGGAAATTATGAGCATGAATAAGAAAGCTAAGTGGAATAGTGATCTATAAAATAAGTTGAATAAATTACTATTAATAACACAACTTACTAATTTGAACAAAACTAAATTGAATGCCTGCCAAACGATATACCGTTCCGGATTACTGTATGAAGCACTTGCTCGTCGTTTCTTAATGCTTATCAGTAGAGGAATACACAAAAGTGACAATACAACATTAGAAATATTGAAGGCGATGAAAACCATCTGGAAAAGATTTCGTTCATTGTAAGCAGCAAAAGGTCTATACTGTGTAGTTCTACTTCATACTTGAAAGTTCAGATTTGCCTGGCTTTGACAATGTAGAGGAGCCAAAAGAAAAGATACTGACGATATCTTTTCCGGCAACCATTAAATAAATTAGATAAATCCAGTCATGTATAAACTTTTGAAAAGCTAATACAAATTGTTCAGTTGATGGAAAGAAGTGAGTGAAAAACTTAAAAAGAACCAAAAAAGCAGAGACAAACTGGAAGACTTGAATGGTAATGTGTATGATTAGGAAAGATAAAAAGGCAGGGACTGCCAAACCGATAATGATGAGTCTAAAATTTCAAAAAAATTTGAAAATGTTACAAAAGGATGTTTACGGTTGCTGCAAACCAACGTAGTACATGAAGCATAACATGATGCATATTATGAACAAGAAGAAGTAAATTTTCTTGACAATTTTGTAAAAATGTCGGGAATAAATAAAAACAGGAACTGTTCATCTCGTTTTTTATTTTTCCCGTTCACATAGATAAAAAAATGGAAATATAAAGAT</canonical>
            <polymorphic>GTTTAATTTATGAATCTTCAGAACTTCCGTGGGGTTGATATTGGGGTTGCACAGCTGATGGTCTCTTGTTGCAACAGAAAAGTGTTTTGACTATAGCCATCATATTTCTCTTGTTGCAACTCAAATAAGATAGTTGCATTAAAACGGGTGTCACAATATTATCCACTGACATCAAGAAAAGAACAACAAAAAATGGTTGGAAATTATGAGCATGAATAAGAAAGCTAAGTGGAATAGTGATCTATAAAATAAGTTGAATAAATTACTATTAATAACACAACTTACTAATTTGAACAAAACTAAATTGAATGCCTGCCAAACGATATACCGTTCCGGATTACTGTATGAAGCACTTGCTCGTCGTTTCTTAATGCTTATCAGTAGAGGAATACACAAAAGTGACAATACAACATTAGAAATATTGAAGGCGATGAAAACCATCTGGAAAAGATTTCGTTCATTGTAAGCAGCAAAAGGTCTATACTGTGTAGTTCTACTTSATACTTGAAAGTTCAGATTTGCCTGGCTTTGACAATGTAGAGGAGCCAAAAGAAAAGATACTGACGATATCTTTTCCGGCAACCATTAAATAAATTAGATAAATCCAGTCATGTATAAACTTTTGAAAAGCTAATACAAATTGTTCAGTTGATGGAAAGAAGTGAGTGAAAAACTTAAAAAGAACCAAAAAAGCAGAGACAAACTGGAAGACTTGAATGGTAATGTGTATGATTAGGAAAGATAAAAAGGCAGGGACTGCCAAACCGATAATGATGAGTCTAAAATTTCAAAAAAATTTGAAAATGTTACAAAAGGATGTTTACGGTTGCTGCAAACCAACGTAGTACATGAAGCATAACATGATGCATATTATGAACAAGAAGAAGTAAATTTTCTTGACAATTTTGTAAAAATGTCGGGAATAAATAAAAACAGGAACTGTTCATCTCGTTTTTTATTTTTCCCGTTCACATAGATAAAAAAATGGAAATATAAAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTAGAGGAATACACAAAAGTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAAAGTTTATACATGACTGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGTAGAGGAATACACAAAAGTGACAATACAACATTAGAAATATTGAAGGCGATGAAAACCATCTGGAAAAGATTTCGTTCATTGTAAGCAGCAAAAGGTCTATACTGTGTAGTTCTACTTCATACTTGAAAGTTCAGATTTGCCTGGCTTTGACAATGTAGAGGAGCCAAAAGAAAAGATACTGACGATATCTTTTCCGGCAACCATTAAATAAATTAGATAAATCCAGTCATGTATAAACTTTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>CAGTAGAGGAATACACAAAAGTGACAATACAACATTAGAAATATTGAAGGCGATGAAAACCATCTGGAAAAGATTTCGTTCATTGTAAGCAGCAAAAGGTCTATACTGTGTAGTTCTACTTSATACTTGAAAGTTCAGATTTGCCTGGCTTTGACAATGTAGAGGAGCCAAAAGAAAAGATACTGACGATATCTTTTCCGGCAACCATTAAATAAATTAGATAAATCCAGTCATGTATAAACTTTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17477</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>132652</contig_pos>
        <strand>+</strand>
        <context>GTGTAGTTCT[A/C]CTTSATACTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAAGATTTCGTTCATTGTAAGCAGCAAAAGGTCTATACTGTGTAGTTCT</left_flank>
        <right_flank>CTTCATACTTGAAAGTTCAGATTTGCCTGGCTTTGACAATGTAGAGGAGC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACGTTTAATTTATGAATCTTCAGAACTTCCGTGGGGTTGATATTGGGGTTGCACAGCTGATGGTCTCTTGTTGCAACAGAAAAGTGTTTTGACTATAGCCATCATATTTCTCTTGTTGCAACTCAAATAAGATAGTTGCATTAAAACGGGTGTCACAATATTATCCACTGACATCAAGAAAAGAACAACAAAAAATGGTTGGAAATTATGAGCATGAATAAGAAAGCTAAGTGGAATAGTGATCTATAAAATAAGTTGAATAAATTACTATTAATAACACAACTTACTAATTTGAACAAAACTAAATTGAATGCCTGCCAAACGATATACCGTTCCGGATTACTGTATGAAGCACTTGCTCGTCGTTTCTTAATGCTTATCAGTAGAGGAATACACAAAAGTGACAATACAACATTAGAAATATTGAAGGCGATGAAAACCATCTGGAAAAGATTTCGTTCATTGTAAGCAGCAAAAGGTCTATACTGTGTAGTTCTACTTCATACTTGAAAGTTCAGATTTGCCTGGCTTTGACAATGTAGAGGAGCCAAAAGAAAAGATACTGACGATATCTTTTCCGGCAACCATTAAATAAATTAGATAAATCCAGTCATGTATAAACTTTTGAAAAGCTAATACAAATTGTTCAGTTGATGGAAAGAAGTGAGTGAAAAACTTAAAAAGAACCAAAAAAGCAGAGACAAACTGGAAGACTTGAATGGTAATGTGTATGATTAGGAAAGATAAAAAGGCAGGGACTGCCAAACCGATAATGATGAGTCTAAAATTTCAAAAAAATTTGAAAATGTTACAAAAGGATGTTTACGGTTGCTGCAAACCAACGTAGTACATGAAGCATAACATGATGCATATTATGAACAAGAAGAAGTAAATTTTCTTGACAATTTTGTAAAAATGTCGGGAATAAATAAAAACAGGAACTGTTCATCTCGTTTTTTATTTTTCCCGTTCACATAGATAAAAAAATGGAAATATAA</canonical>
            <polymorphic>AAACGTTTAATTTATGAATCTTCAGAACTTCCGTGGGGTTGATATTGGGGTTGCACAGCTGATGGTCTCTTGTTGCAACAGAAAAGTGTTTTGACTATAGCCATCATATTTCTCTTGTTGCAACTCAAATAAGATAGTTGCATTAAAACGGGTGTCACAATATTATCCACTGACATCAAGAAAAGAACAACAAAAAATGGTTGGAAATTATGAGCATGAATAAGAAAGCTAAGTGGAATAGTGATCTATAAAATAAGTTGAATAAATTACTATTAATAACACAACTTACTAATTTGAACAAAACTAAATTGAATGCCTGCCAAACGATATACCGTTCCGGATTACTGTATGAAGCACTTGCTCGTCGTTTCTTAATGCTTATCAGTAGAGGAATACACAAAAGTGACAATACAACATTAGAAATATTGAAGGCGATGAAAACCATCTGGAAAAGATTTCGTTCATTGTAAGCAGCAAAAGGTCTATACTGTGTAGTTCTMCTTCATACTTGAAAGTTCAGATTTGCCTGGCTTTGACAATGTAGAGGAGCCAAAAGAAAAGATACTGACGATATCTTTTCCGGCAACCATTAAATAAATTAGATAAATCCAGTCATGTATAAACTTTTGAAAAGCTAATACAAATTGTTCAGTTGATGGAAAGAAGTGAGTGAAAAACTTAAAAAGAACCAAAAAAGCAGAGACAAACTGGAAGACTTGAATGGTAATGTGTATGATTAGGAAAGATAAAAAGGCAGGGACTGCCAAACCGATAATGATGAGTCTAAAATTTCAAAAAAATTTGAAAATGTTACAAAAGGATGTTTACGGTTGCTGCAAACCAACGTAGTACATGAAGCATAACATGATGCATATTATGAACAAGAAGAAGTAAATTTTCTTGACAATTTTGTAAAAATGTCGGGAATAAATAAAAACAGGAACTGTTCATCTCGTTTTTTATTTTTCCCGTTCACATAGATAAAAAAATGGAAATATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTAGAGGAATACACAAAAGTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAAAGTTTATACATGACTGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGTAGAGGAATACACAAAAGTGACAATACAACATTAGAAATATTGAAGGCGATGAAAACCATCTGGAAAAGATTTCGTTCATTGTAAGCAGCAAAAGGTCTATACTGTGTAGTTCTACTTCATACTTGAAAGTTCAGATTTGCCTGGCTTTGACAATGTAGAGGAGCCAAAAGAAAAGATACTGACGATATCTTTTCCGGCAACCATTAAATAAATTAGATAAATCCAGTCATGTATAAACTTTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>CAGTAGAGGAATACACAAAAGTGACAATACAACATTAGAAATATTGAAGGCGATGAAAACCATCTGGAAAAGATTTCGTTCATTGTAAGCAGCAAAAGGTCTATACTGTGTAGTTCTMCTTCATACTTGAAAGTTCAGATTTGCCTGGCTTTGACAATGTAGAGGAGCCAAAAGAAAAGATACTGACGATATCTTTTCCGGCAACCATTAAATAAATTAGATAAATCCAGTCATGTATAAACTTTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17478</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>132616</contig_pos>
        <strand>+</strand>
        <context>GATTTCGTTC[A/T]TTGTAAGCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACATTAGAAATATTGAAGGCGATGAAAACCATCTGGAAAAGATTTCGTTC</left_flank>
        <right_flank>TTGTAAGCAGCAAAAGGTCTATACTGTGTAGTTCTACTTCATACTTGAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTGTTGTGCAAAAAAATAGATCATGACTTCTTGAAAACGTTTAATTTATGAATCTTCAGAACTTCCGTGGGGTTGATATTGGGGTTGCACAGCTGATGGTCTCTTGTTGCAACAGAAAAGTGTTTTGACTATAGCCATCATATTTCTCTTGTTGCAACTCAAATAAGATAGTTGCATTAAAACGGGTGTCACAATATTATCCACTGACATCAAGAAAAGAACAACAAAAAATGGTTGGAAATTATGAGCATGAATAAGAAAGCTAAGTGGAATAGTGATCTATAAAATAAGTTGAATAAATTACTATTAATAACACAACTTACTAATTTGAACAAAACTAAATTGAATGCCTGCCAAACGATATACCGTTCCGGATTACTGTATGAAGCACTTGCTCGTCGTTTCTTAATGCTTATCAGTAGAGGAATACACAAAAGTGACAATACAACATTAGAAATATTGAAGGCGATGAAAACCATCTGGAAAAGATTTCGTTCATTGTAAGCAGCAAAAGGTCTATACTGTGTAGTTCTACTTCATACTTGAAAGTTCAGATTTGCCTGGCTTTGACAATGTAGAGGAGCCAAAAGAAAAGATACTGACGATATCTTTTCCGGCAACCATTAAATAAATTAGATAAATCCAGTCATGTATAAACTTTTGAAAAGCTAATACAAATTGTTCAGTTGATGGAAAGAAGTGAGTGAAAAACTTAAAAAGAACCAAAAAAGCAGAGACAAACTGGAAGACTTGAATGGTAATGTGTATGATTAGGAAAGATAAAAAGGCAGGGACTGCCAAACCGATAATGATGAGTCTAAAATTTCAAAAAAATTTGAAAATGTTACAAAAGGATGTTTACGGTTGCTGCAAACCAACGTAGTACATGAAGCATAACATGATGCATATTATGAACAAGAAGAAGTAAATTTTCTTGACAATTTTGTAAAAATGTCGGGAATAAATAAAAACAGGAACTGTTCATCTCGTTTTTTATT</canonical>
            <polymorphic>TGTTGTTGTGCAAAAAAATAGATCATGACTTCTTGAAAACGTTTAATTTATGAATCTTCAGAACTTCCGTGGGGTTGATATTGGGGTTGCACAGCTGATGGTCTCTTGTTGCAACAGAAAAGTGTTTTGACTATAGCCATCATATTTCTCTTGTTGCAACTCAAATAAGATAGTTGCATTAAAACGGGTGTCACAATATTATCCACTGACATCAAGAAAAGAACAACAAAAAATGGTTGGAAATTATGAGCATGAATAAGAAAGCTAAGTGGAATAGTGATCTATAAAATAAGTTGAATAAATTACTATTAATAACACAACTTACTAATTTGAACAAAACTAAATTGAATGCCTGCCAAACGATATACCGTTCCGGATTACTGTATGAAGCACTTGCTCGTCGTTTCTTAATGCTTATCAGTAGAGGAATACACAAAAGTGACAATACAACATTAGAAATATTGAAGGCGATGAAAACCATCTGGAAAAGATTTCGTTCWTTGTAAGCAGCAAAAGGTCTATACTGTGTAGTTCTACTTCATACTTGAAAGTTCAGATTTGCCTGGCTTTGACAATGTAGAGGAGCCAAAAGAAAAGATACTGACGATATCTTTTCCGGCAACCATTAAATAAATTAGATAAATCCAGTCATGTATAAACTTTTGAAAAGCTAATACAAATTGTTCAGTTGATGGAAAGAAGTGAGTGAAAAACTTAAAAAGAACCAAAAAAGCAGAGACAAACTGGAAGACTTGAATGGTAATGTGTATGATTAGGAAAGATAAAAAGGCAGGGACTGCCAAACCGATAATGATGAGTCTAAAATTTCAAAAAAATTTGAAAATGTTACAAAAGGATGTTTACGGTTGCTGCAAACCAACGTAGTACATGAAGCATAACATGATGCATATTATGAACAAGAAGAAGTAAATTTTCTTGACAATTTTGTAAAAATGTCGGGAATAAATAAAAACAGGAACTGTTCATCTCGTTTTTTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTAGAGGAATACACAAAAGTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAAAGTTTATACATGACTGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGTAGAGGAATACACAAAAGTGACAATACAACATTAGAAATATTGAAGGCGATGAAAACCATCTGGAAAAGATTTCGTTCATTGTAAGCAGCAAAAGGTCTATACTGTGTAGTTCTACTTCATACTTGAAAGTTCAGATTTGCCTGGCTTTGACAATGTAGAGGAGCCAAAAGAAAAGATACTGACGATATCTTTTCCGGCAACCATTAAATAAATTAGATAAATCCAGTCATGTATAAACTTTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>CAGTAGAGGAATACACAAAAGTGACAATACAACATTAGAAATATTGAAGGCGATGAAAACCATCTGGAAAAGATTTCGTTCWTTGTAAGCAGCAAAAGGTCTATACTGTGTAGTTCTACTTCATACTTGAAAGTTCAGATTTGCCTGGCTTTGACAATGTAGAGGAGCCAAAAGAAAAGATACTGACGATATCTTTTCCGGCAACCATTAAATAAATTAGATAAATCCAGTCATGTATAAACTTTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17479</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>132605</contig_pos>
        <strand>+</strand>
        <context>CATCTGGAAA[A/C]GATTTCGTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTGACAATACAACATTAGAAATATTGAAGGCGATGAAAACCATCTGGAAA</left_flank>
        <right_flank>GATTTCGTTCATTGTAAGCAGCAAAAGGTCTATACTGTGTAGTTCTACTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAGAAAAATTTGTTGTTGTGCAAAAAAATAGATCATGACTTCTTGAAAACGTTTAATTTATGAATCTTCAGAACTTCCGTGGGGTTGATATTGGGGTTGCACAGCTGATGGTCTCTTGTTGCAACAGAAAAGTGTTTTGACTATAGCCATCATATTTCTCTTGTTGCAACTCAAATAAGATAGTTGCATTAAAACGGGTGTCACAATATTATCCACTGACATCAAGAAAAGAACAACAAAAAATGGTTGGAAATTATGAGCATGAATAAGAAAGCTAAGTGGAATAGTGATCTATAAAATAAGTTGAATAAATTACTATTAATAACACAACTTACTAATTTGAACAAAACTAAATTGAATGCCTGCCAAACGATATACCGTTCCGGATTACTGTATGAAGCACTTGCTCGTCGTTTCTTAATGCTTATCAGTAGAGGAATACACAAAAGTGACAATACAACATTAGAAATATTGAAGGCGATGAAAACCATCTGGAAAAGATTTCGTTCATTGTAAGCAGCAAAAGGTCTATACTGTGTAGTTCTACTTCATACTTGAAAGTTCAGATTTGCCTGGCTTTGACAATGTAGAGGAGCCAAAAGAAAAGATACTGACGATATCTTTTCCGGCAACCATTAAATAAATTAGATAAATCCAGTCATGTATAAACTTTTGAAAAGCTAATACAAATTGTTCAGTTGATGGAAAGAAGTGAGTGAAAAACTTAAAAAGAACCAAAAAAGCAGAGACAAACTGGAAGACTTGAATGGTAATGTGTATGATTAGGAAAGATAAAAAGGCAGGGACTGCCAAACCGATAATGATGAGTCTAAAATTTCAAAAAAATTTGAAAATGTTACAAAAGGATGTTTACGGTTGCTGCAAACCAACGTAGTACATGAAGCATAACATGATGCATATTATGAACAAGAAGAAGTAAATTTTCTTGACAATTTTGTAAAAATGTCGGGAATAAATAAAAACAGGAACTGTTCATCT</canonical>
            <polymorphic>GTAGAAAAATTTGTTGTTGTGCAAAAAAATAGATCATGACTTCTTGAAAACGTTTAATTTATGAATCTTCAGAACTTCCGTGGGGTTGATATTGGGGTTGCACAGCTGATGGTCTCTTGTTGCAACAGAAAAGTGTTTTGACTATAGCCATCATATTTCTCTTGTTGCAACTCAAATAAGATAGTTGCATTAAAACGGGTGTCACAATATTATCCACTGACATCAAGAAAAGAACAACAAAAAATGGTTGGAAATTATGAGCATGAATAAGAAAGCTAAGTGGAATAGTGATCTATAAAATAAGTTGAATAAATTACTATTAATAACACAACTTACTAATTTGAACAAAACTAAATTGAATGCCTGCCAAACGATATACCGTTCCGGATTACTGTATGAAGCACTTGCTCGTCGTTTCTTAATGCTTATCAGTAGAGGAATACACAAAAGTGACAATACAACATTAGAAATATTGAAGGCGATGAAAACCATCTGGAAAMGATTTCGTTCATTGTAAGCAGCAAAAGGTCTATACTGTGTAGTTCTACTTCATACTTGAAAGTTCAGATTTGCCTGGCTTTGACAATGTAGAGGAGCCAAAAGAAAAGATACTGACGATATCTTTTCCGGCAACCATTAAATAAATTAGATAAATCCAGTCATGTATAAACTTTTGAAAAGCTAATACAAATTGTTCAGTTGATGGAAAGAAGTGAGTGAAAAACTTAAAAAGAACCAAAAAAGCAGAGACAAACTGGAAGACTTGAATGGTAATGTGTATGATTAGGAAAGATAAAAAGGCAGGGACTGCCAAACCGATAATGATGAGTCTAAAATTTCAAAAAAATTTGAAAATGTTACAAAAGGATGTTTACGGTTGCTGCAAACCAACGTAGTACATGAAGCATAACATGATGCATATTATGAACAAGAAGAAGTAAATTTTCTTGACAATTTTGTAAAAATGTCGGGAATAAATAAAAACAGGAACTGTTCATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTAGAGGAATACACAAAAGTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAAAGTTTATACATGACTGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGTAGAGGAATACACAAAAGTGACAATACAACATTAGAAATATTGAAGGCGATGAAAACCATCTGGAAAAGATTTCGTTCATTGTAAGCAGCAAAAGGTCTATACTGTGTAGTTCTACTTCATACTTGAAAGTTCAGATTTGCCTGGCTTTGACAATGTAGAGGAGCCAAAAGAAAAGATACTGACGATATCTTTTCCGGCAACCATTAAATAAATTAGATAAATCCAGTCATGTATAAACTTTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>CAGTAGAGGAATACACAAAAGTGACAATACAACATTAGAAATATTGAAGGCGATGAAAACCATCTGGAAAMGATTTCGTTCATTGTAAGCAGCAAAAGGTCTATACTGTGTAGTTCTACTTCATACTTGAAAGTTCAGATTTGCCTGGCTTTGACAATGTAGAGGAGCCAAAAGAAAAGATACTGACGATATCTTTTCCGGCAACCATTAAATAAATTAGATAAATCCAGTCATGTATAAACTTTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17480</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>132564</contig_pos>
        <strand>+</strand>
        <context>AGTGACAATA[A/C]AACATTAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCGTCGTTTCTTAATGCTTATCAGTAGAGGAATACACAAAAGTGACAATA</left_flank>
        <right_flank>AACATTAGAAATATTGAAGGCGATGAAAACCATCTGGAAAAGATTTCGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTTTTCTTGCTGTATTTTATGTATGTATATGTTTTTGTTGTAGAAAAATTTGTTGTTGTGCAAAAAAATAGATCATGACTTCTTGAAAACGTTTAATTTATGAATCTTCAGAACTTCCGTGGGGTTGATATTGGGGTTGCACAGCTGATGGTCTCTTGTTGCAACAGAAAAGTGTTTTGACTATAGCCATCATATTTCTCTTGTTGCAACTCAAATAAGATAGTTGCATTAAAACGGGTGTCACAATATTATCCACTGACATCAAGAAAAGAACAACAAAAAATGGTTGGAAATTATGAGCATGAATAAGAAAGCTAAGTGGAATAGTGATCTATAAAATAAGTTGAATAAATTACTATTAATAACACAACTTACTAATTTGAACAAAACTAAATTGAATGCCTGCCAAACGATATACCGTTCCGGATTACTGTATGAAGCACTTGCTCGTCGTTTCTTAATGCTTATCAGTAGAGGAATACACAAAAGTGACAATACAACATTAGAAATATTGAAGGCGATGAAAACCATCTGGAAAAGATTTCGTTCATTGTAAGCAGCAAAAGGTCTATACTGTGTAGTTCTACTTCATACTTGAAAGTTCAGATTTGCCTGGCTTTGACAATGTAGAGGAGCCAAAAGAAAAGATACTGACGATATCTTTTCCGGCAACCATTAAATAAATTAGATAAATCCAGTCATGTATAAACTTTTGAAAAGCTAATACAAATTGTTCAGTTGATGGAAAGAAGTGAGTGAAAAACTTAAAAAGAACCAAAAAAGCAGAGACAAACTGGAAGACTTGAATGGTAATGTGTATGATTAGGAAAGATAAAAAGGCAGGGACTGCCAAACCGATAATGATGAGTCTAAAATTTCAAAAAAATTTGAAAATGTTACAAAAGGATGTTTACGGTTGCTGCAAACCAACGTAGTACATGAAGCATAACATGATGCATATTATGAACAAGAAGAAGTAAATTTTCTTGACAATTTTG</canonical>
            <polymorphic>ATGTTTTCTTGCTGTATTTTATGTATGTATATGTTTTTGTTGTAGAAAAATTTGTTGTTGTGCAAAAAAATAGATCATGACTTCTTGAAAACGTTTAATTTATGAATCTTCAGAACTTCCGTGGGGTTGATATTGGGGTTGCACAGCTGATGGTCTCTTGTTGCAACAGAAAAGTGTTTTGACTATAGCCATCATATTTCTCTTGTTGCAACTCAAATAAGATAGTTGCATTAAAACGGGTGTCACAATATTATCCACTGACATCAAGAAAAGAACAACAAAAAATGGTTGGAAATTATGAGCATGAATAAGAAAGCTAAGTGGAATAGTGATCTATAAAATAAGTTGAATAAATTACTATTAATAACACAACTTACTAATTTGAACAAAACTAAATTGAATGCCTGCCAAACGATATACCGTTCCGGATTACTGTATGAAGCACTTGCTCGTCGTTTCTTAATGCTTATCAGTAGAGGAATACACAAAAGTGACAATAMAACATTAGAAATATTGAAGGCGATGAAAACCATCTGGAAAAGATTTCGTTCATTGTAAGCAGCAAAAGGTCTATACTGTGTAGTTCTACTTCATACTTGAAAGTTCAGATTTGCCTGGCTTTGACAATGTAGAGGAGCCAAAAGAAAAGATACTGACGATATCTTTTCCGGCAACCATTAAATAAATTAGATAAATCCAGTCATGTATAAACTTTTGAAAAGCTAATACAAATTGTTCAGTTGATGGAAAGAAGTGAGTGAAAAACTTAAAAAGAACCAAAAAAGCAGAGACAAACTGGAAGACTTGAATGGTAATGTGTATGATTAGGAAAGATAAAAAGGCAGGGACTGCCAAACCGATAATGATGAGTCTAAAATTTCAAAAAAATTTGAAAATGTTACAAAAGGATGTTTACGGTTGCTGCAAACCAACGTAGTACATGAAGCATAACATGATGCATATTATGAACAAGAAGAAGTAAATTTTCTTGACAATTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGATTACTGTATGAAGCACT</pcr_primer_p1>
		<pcr_primer_p2>GATATCGTCAGTATCTTTTCTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>CGGATTACTGTATGAAGCACTTGCTCGTCGTTTCTTAATGCTTATCAGTAGAGGAATACACAAAAGTGACAATACAACATTAGAAATATTGAAGGCGATGAAAACCATCTGGAAAAGATTTCGTTCATTGTAAGCAGCAAAAGGTCTATACTGTGTAGTTCTACTTCATACTTGAAAGTTCAGATTTGCCTGGCTTTGACAATGTAGAGGAGCCAAAAGAAAAGATACTGACGATATC</canonical_amplicon>
		<polymorphic_amplicon>CGGATTACTGTATGAAGCACTTGCTCGTCGTTTCTTAATGCTTATCAGTAGAGGAATACACAAAAGTGACAATAMAACATTAGAAATATTGAAGGCGATGAAAACCATCTGGAAAAGATTTCGTTCATTGTAAGCAGCAAAAGGTCTATACTGTGTAGTTCTACTTCATACTTGAAAGTTCAGATTTGCCTGGCTTTGACAATGTAGAGGAGCCAAAAGAAAAGATACTGACGATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17481</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>133955</contig_pos>
        <strand>+</strand>
        <context>AAACGTTGCA[C/T]AGACCAAGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTGTCTGAAAACACCAAGTAGACGAAGAACGAGAGCGAAACGTTGCA</left_flank>
        <right_flank>AGACCAAGGAAAACGGCTGAAATAGATGAAATCGTATTTAAATCTACTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATCAGTTTTTATTAATTCGAAGATTTACAAAAATGAATCGTCGTTTGTAGAAGACTTCTCGTTGAGAAGGTATGTCTCGGTGCACACGGATGCTGAAATTTACAATTTAATTCACAAAACTCTCTTCAAACATACATTCAGTCTCTGACGGTTTGATTCTGATCTGCTCACGAGCCAGAAGGTTTGTTCTCAGTTTTGGATCACTCGACTCATTTGAGTAATGGACAAGTGAACGTGGAGTTGAGCAGCAAGGCACGAGCTCGGTTAGACGACTGAAATTTTTAAAATTCTGATATCATTGAAAAATCAAAAATCTCTTCTGATTCTCAAAACATGTAATTTTTTGAATCGAGAATTTTCCTCTGAAATAAATTACAGATTACAAAACCCTCCTCCGCATTTCTGCTAATCACTTTGTTTTCACTCACGTTTTCACCATCTCTCGGAATTTGTCTGAAAACACCAAGTAGACGAAGAACGAGAGCGAAACGTTGCACAGACCAAGGAAAACGGCTGAAATAGATGAAATCGTATTTAAATCTACTGTCAAAAAATCAAACTAACCAATAGTGTTCCAAACGCAAATGGCTGGTTCATTAGTCACACCAGGACCGAATATAGTGGCGTACAAGAAAACAGGGATTGGGGGAAGTTCGGCAACTAACTGGAGTCCAGTAGTGATCAAAGTGATGCGGGTTACACAACGCTTTTCGGCTCTGTAAACATAGTTTCATGCTATAGAATAGCTGAAGTTTCAAATCGACTACTCACGTAAAATGGGTGACAAACTCGGTTTTCTTCAAAACCAATTTCCACAAAATTGATGATGCCATAAAGAGAAGTAGACCCATTGGAACGACAATAGCAAGGATCAGATTGGCAAAAGTGTGCAATTTCTCCAGACAGATCATTATGAAATCTGAGACTATGATTTTTAGAATTCTAGGATTTCAGTGGGGTTTGACCTTCAGATGCATGGATGGTTGGAATAACACGA</canonical>
            <polymorphic>AAAATCAGTTTTTATTAATTCGAAGATTTACAAAAATGAATCGTCGTTTGTAGAAGACTTCTCGTTGAGAAGGTATGTCTCGGTGCACACGGATGCTGAAATTTACAATTTAATTCACAAAACTCTCTTCAAACATACATTCAGTCTCTGACGGTTTGATTCTGATCTGCTCACGAGCCAGAAGGTTTGTTCTCAGTTTTGGATCACTCGACTCATTTGAGTAATGGACAAGTGAACGTGGAGTTGAGCAGCAAGGCACGAGCTCGGTTAGACGACTGAAATTTTTAAAATTCTGATATCATTGAAAAATCAAAAATCTCTTCTGATTCTCAAAACATGTAATTTTTTGAATCGAGAATTTTCCTCTGAAATAAATTACAGATTACAAAACCCTCCTCCGCATTTCTGCTAATCACTTTGTTTTCACTCACGTTTTCACCATCTCTCGGAATTTGTCTGAAAACACCAAGTAGACGAAGAACGAGAGCGAAACGTTGCAYAGACCAAGGAAAACGGCTGAAATAGATGAAATCGTATTTAAATCTACTGTCAAAAAATCAAACTAACCAATAGTGTTCCAAACGCAAATGGCTGGTTCATTAGTCACACCAGGACCGAATATAGTGGCGTACAAGAAAACAGGGATTGGGGGAAGTTCGGCAACTAACTGGAGTCCAGTAGTGATCAAAGTGATGCGGGTTACACAACGCTTTTCGGCTCTGTAAACATAGTTTCATGCTATAGAATAGCTGAAGTTTCAAATCGACTACTCACGTAAAATGGGTGACAAACTCGGTTTTCTTCAAAACCAATTTCCACAAAATTGATGATGCCATAAAGAGAAGTAGACCCATTGGAACGACAATAGCAAGGATCAGATTGGCAAAAGTGTGCAATTTCTCCAGACAGATCATTATGAAATCTGAGACTATGATTTTTAGAATTCTAGGATTTCAGTGGGGTTTGACCTTCAGATGCATGGATGGTTGGAATAACACGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>157 85 76 73 69 66 57 56 38 34 33 32 31 28 28 27 18 18 13 12 11 9 8 6 4 3 2 2 2 2</canonical_bands>
                <polymorphic_bands>157 110 85 73 69 66 57 56 38 33 32 31 28 28 27 18 18 13 12 11 9 8 6 4 3 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTTCTGCTAATCACTTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTTGTACGCCACTATATTC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CATTTCTGCTAATCACTTTGTTTTCACTCACGTTTTCACCATCTCTCGGAATTTGTCTGAAAACACCAAGTAGACGAAGAACGAGAGCGAAACGTTGCACAGACCAAGGAAAACGGCTGAAATAGATGAAATCGTATTTAAATCTACTGTCAAAAAATCAAACTAACCAATAGTGTTCCAAACGCAAATGGCTGGTTCATTAGTCACACCAGGACCGAATATAGTGGCGTACAAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>CATTTCTGCTAATCACTTTGTTTTCACTCACGTTTTCACCATCTCTCGGAATTTGTCTGAAAACACCAAGTAGACGAAGAACGAGAGCGAAACGTTGCAYAGACCAAGGAAAACGGCTGAAATAGATGAAATCGTATTTAAATCTACTGTCAAAAAATCAAACTAACCAATAGTGTTCCAAACGCAAATGGCTGGTTCATTAGTCACACCAGGACCGAATATAGTGGCGTACAAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17482</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>135752</contig_pos>
        <strand>+</strand>
        <context>CAAAGTTGAG[C/G]GCGATGAACG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTGAGTTCATTGCAACTCGGAACTTTCAAAGCAAAATGAACAAAGTTGAG</left_flank>
        <right_flank>GCGATGAACGAAGAAGCGAACGAGGCTCCACCCCCTTTTAAGACCAATTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGATCATTATCTAGGTTGCTGAAAGAAATTGAGGGAACTTAGGAATTTGTTTTTTTGCATATTTTTTAGGAGAAATCAAACGGTGCTACAACAAAACACTGAAAAACCACTTTAATCAAGAAAAAGCTCAGAAAGACATGAAATCTCTGTGAAAATATTCATATTCAAATGAAACGTTTCGAAGGAGAAGAGGAAATAACATATCTCCCCCATAAATTTATGTTCTTTCCTCTTCCGCTTCTTGTCACGAGTCGCACCAGTTTCTATAGAAATTAGAGTCGTAAATCTTCCGATTTTATATGCCTAATTTTAGTAGAGAAGTTTAAAAAAATGTTTTGAGCGAATCCAGGAAAAATCAAACACACAAAGTAACTCACCGCAATAGGATCCAACCCGAGCATTGGAGCAATAATTGATGGTGGAGGGTCATCATCGGTTTCGTTGAAAGTTGAGTTCATTGCAACTCGGAACTTTCAAAGCAAAATGAACAAAGTTGAGGGCGATGAACGAAGAAGCGAACGAGGCTCCACCCCCTTTTAAGACCAATTAAAGGGGCGGAGCTTTAGTCTTGAGAAGCGGGTTTTTAATCGGTATAAAATCTAAAATTATGTATAATTTGGTCATTTTGTTGGTGAAATATCACAAGGTAGCGGGAGAATAATTACAGATTACATAGAAAGAAGAATTCTTGGAAATCATTTTGCTCTGATACACATTTACTATTAGAAATGGATTTCTGATGATAAGTAGAAAAACGAAGAGAAAAAAAGTTTCGAAGAATGTGGATCAGAGATTTATACTTTGTACTCACTTTACAAAATACAAAAACGGAAGCTATACTACAAGGAACGATGGCGCATTTTTACCAAAAATAAAAAGCGAAACTCTGTGATCCGCCTAGATCCGGGAAAAAGTAGGCGAGCCAGTGATCATCCGAAAATGCATTCGTAAGTTCGAGATTTGTCGGATTAGGGATGAGCAATAGGAGAAAAATGCATT</canonical>
            <polymorphic>AAGATCATTATCTAGGTTGCTGAAAGAAATTGAGGGAACTTAGGAATTTGTTTTTTTGCATATTTTTTAGGAGAAATCAAACGGTGCTACAACAAAACACTGAAAAACCACTTTAATCAAGAAAAAGCTCAGAAAGACATGAAATCTCTGTGAAAATATTCATATTCAAATGAAACGTTTCGAAGGAGAAGAGGAAATAACATATCTCCCCCATAAATTTATGTTCTTTCCTCTTCCGCTTCTTGTCACGAGTCGCACCAGTTTCTATAGAAATTAGAGTCGTAAATCTTCCGATTTTATATGCCTAATTTTAGTAGAGAAGTTTAAAAAAATGTTTTGAGCGAATCCAGGAAAAATCAAACACACAAAGTAACTCACCGCAATAGGATCCAACCCGAGCATTGGAGCAATAATTGATGGTGGAGGGTCATCATCGGTTTCGTTGAAAGTTGAGTTCATTGCAACTCGGAACTTTCAAAGCAAAATGAACAAAGTTGAGSGCGATGAACGAAGAAGCGAACGAGGCTCCACCCCCTTTTAAGACCAATTAAAGGGGCGGAGCTTTAGTCTTGAGAAGCGGGTTTTTAATCGGTATAAAATCTAAAATTATGTATAATTTGGTCATTTTGTTGGTGAAATATCACAAGGTAGCGGGAGAATAATTACAGATTACATAGAAAGAAGAATTCTTGGAAATCATTTTGCTCTGATACACATTTACTATTAGAAATGGATTTCTGATGATAAGTAGAAAAACGAAGAGAAAAAAAGTTTCGAAGAATGTGGATCAGAGATTTATACTTTGTACTCACTTTACAAAATACAAAAACGGAAGCTATACTACAAGGAACGATGGCGCATTTTTACCAAAAATAAAAAGCGAAACTCTGTGATCCGCCTAGATCCGGGAAAAAGTAGGCGAGCCAGTGATCATCCGAAAATGCATTCGTAAGTTCGAGATTTGTCGGATTAGGGATGAGCAATAGGAGAAAAATGCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTCGTTGAAAGTTGAGTT</pcr_primer_p1>
		<pcr_primer_p2>ATCTGTAATTATTCTCCCGCTAC</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>GGTTTCGTTGAAAGTTGAGTTCATTGCAACTCGGAACTTTCAAAGCAAAATGAACAAAGTTGAGGGCGATGAACGAAGAAGCGAACGAGGCTCCACCCCCTTTTAAGACCAATTAAAGGGGCGGAGCTTTAGTCTTGAGAAGCGGGTTTTTAATCGGTATAAAATCTAAAATTATGTATAATTTGGTCATTTTGTTGGTGAAATATCACAAGGTAGCGGGAGAATAATTACAGAT</canonical_amplicon>
		<polymorphic_amplicon>GGTTTCGTTGAAAGTTGAGTTCATTGCAACTCGGAACTTTCAAAGCAAAATGAACAAAGTTGAGSGCGATGAACGAAGAAGCGAACGAGGCTCCACCCCCTTTTAAGACCAATTAAAGGGGCGGAGCTTTAGTCTTGAGAAGCGGGTTTTTAATCGGTATAAAATCTAAAATTATGTATAATTTGGTCATTTTGTTGGTGAAATATCACAAGGTAGCGGGAGAATAATTACAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17483</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>135839</contig_pos>
        <strand>+</strand>
        <context>GCGGGTTTTT[A/G]ATCGGTATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTAAGACCAATTAAAGGGGCGGAGCTTTAGTCTTGAGAAGCGGGTTTTT</left_flank>
        <right_flank>ATCGGTATAAAATCTAAAATTATGTATAATTTGGTCATTTTGTTGGTGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACAACAAAACACTGAAAAACCACTTTAATCAAGAAAAAGCTCAGAAAGACATGAAATCTCTGTGAAAATATTCATATTCAAATGAAACGTTTCGAAGGAGAAGAGGAAATAACATATCTCCCCCATAAATTTATGTTCTTTCCTCTTCCGCTTCTTGTCACGAGTCGCACCAGTTTCTATAGAAATTAGAGTCGTAAATCTTCCGATTTTATATGCCTAATTTTAGTAGAGAAGTTTAAAAAAATGTTTTGAGCGAATCCAGGAAAAATCAAACACACAAAGTAACTCACCGCAATAGGATCCAACCCGAGCATTGGAGCAATAATTGATGGTGGAGGGTCATCATCGGTTTCGTTGAAAGTTGAGTTCATTGCAACTCGGAACTTTCAAAGCAAAATGAACAAAGTTGAGGGCGATGAACGAAGAAGCGAACGAGGCTCCACCCCCTTTTAAGACCAATTAAAGGGGCGGAGCTTTAGTCTTGAGAAGCGGGTTTTTAATCGGTATAAAATCTAAAATTATGTATAATTTGGTCATTTTGTTGGTGAAATATCACAAGGTAGCGGGAGAATAATTACAGATTACATAGAAAGAAGAATTCTTGGAAATCATTTTGCTCTGATACACATTTACTATTAGAAATGGATTTCTGATGATAAGTAGAAAAACGAAGAGAAAAAAAGTTTCGAAGAATGTGGATCAGAGATTTATACTTTGTACTCACTTTACAAAATACAAAAACGGAAGCTATACTACAAGGAACGATGGCGCATTTTTACCAAAAATAAAAAGCGAAACTCTGTGATCCGCCTAGATCCGGGAAAAAGTAGGCGAGCCAGTGATCATCCGAAAATGCATTCGTAAGTTCGAGATTTGTCGGATTAGGGATGAGCAATAGGAGAAAAATGCATTATTTTTCAGTTTGAAGTGATTAAAGGACACCAGCAAAAAAAACTGGCATATTTTTTAATTAACAAAATTCGAGAGTATCATGACAAC</canonical>
            <polymorphic>TACAACAAAACACTGAAAAACCACTTTAATCAAGAAAAAGCTCAGAAAGACATGAAATCTCTGTGAAAATATTCATATTCAAATGAAACGTTTCGAAGGAGAAGAGGAAATAACATATCTCCCCCATAAATTTATGTTCTTTCCTCTTCCGCTTCTTGTCACGAGTCGCACCAGTTTCTATAGAAATTAGAGTCGTAAATCTTCCGATTTTATATGCCTAATTTTAGTAGAGAAGTTTAAAAAAATGTTTTGAGCGAATCCAGGAAAAATCAAACACACAAAGTAACTCACCGCAATAGGATCCAACCCGAGCATTGGAGCAATAATTGATGGTGGAGGGTCATCATCGGTTTCGTTGAAAGTTGAGTTCATTGCAACTCGGAACTTTCAAAGCAAAATGAACAAAGTTGAGGGCGATGAACGAAGAAGCGAACGAGGCTCCACCCCCTTTTAAGACCAATTAAAGGGGCGGAGCTTTAGTCTTGAGAAGCGGGTTTTTRATCGGTATAAAATCTAAAATTATGTATAATTTGGTCATTTTGTTGGTGAAATATCACAAGGTAGCGGGAGAATAATTACAGATTACATAGAAAGAAGAATTCTTGGAAATCATTTTGCTCTGATACACATTTACTATTAGAAATGGATTTCTGATGATAAGTAGAAAAACGAAGAGAAAAAAAGTTTCGAAGAATGTGGATCAGAGATTTATACTTTGTACTCACTTTACAAAATACAAAAACGGAAGCTATACTACAAGGAACGATGGCGCATTTTTACCAAAAATAAAAAGCGAAACTCTGTGATCCGCCTAGATCCGGGAAAAAGTAGGCGAGCCAGTGATCATCCGAAAATGCATTCGTAAGTTCGAGATTTGTCGGATTAGGGATGAGCAATAGGAGAAAAATGCATTATTTTTCAGTTTGAAGTGATTAAAGGACACCAGCAAAAAAAACTGGCATATTTTTTAATTAACAAAATTCGAGAGTATCATGACAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>435 214 211 37 35 28 26 10 4</canonical_bands>
                <polymorphic_bands>472 214 211 35 28 26 10 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACTTTCAAAGCAAAATGAAC</pcr_primer_p1>
		<pcr_primer_p2>AATGTGTATCAGAGCAAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAACTTTCAAAGCAAAATGAACAAAGTTGAGGGCGATGAACGAAGAAGCGAACGAGGCTCCACCCCCTTTTAAGACCAATTAAAGGGGCGGAGCTTTAGTCTTGAGAAGCGGGTTTTTAATCGGTATAAAATCTAAAATTATGTATAATTTGGTCATTTTGTTGGTGAAATATCACAAGGTAGCGGGAGAATAATTACAGATTACATAGAAAGAAGAATTCTTGGAAATCATTTTGCTCTGATACACATT</canonical_amplicon>
		<polymorphic_amplicon>GAACTTTCAAAGCAAAATGAACAAAGTTGAGGGCGATGAACGAAGAAGCGAACGAGGCTCCACCCCCTTTTAAGACCAATTAAAGGGGCGGAGCTTTAGTCTTGAGAAGCGGGTTTTTRATCGGTATAAAATCTAAAATTATGTATAATTTGGTCATTTTGTTGGTGAAATATCACAAGGTAGCGGGAGAATAATTACAGATTACATAGAAAGAAGAATTCTTGGAAATCATTTTGCTCTGATACACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17484</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>135852</contig_pos>
        <strand>+</strand>
        <context>CGGTATAAAA[C/T]CTAAAATTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGGGGCGGAGCTTTAGTCTTGAGAAGCGGGTTTTTAATCGGTATAAAA</left_flank>
        <right_flank>CTAAAATTATGTATAATTTGGTCATTTTGTTGGTGAAATATCACAAGGTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAAACCACTTTAATCAAGAAAAAGCTCAGAAAGACATGAAATCTCTGTGAAAATATTCATATTCAAATGAAACGTTTCGAAGGAGAAGAGGAAATAACATATCTCCCCCATAAATTTATGTTCTTTCCTCTTCCGCTTCTTGTCACGAGTCGCACCAGTTTCTATAGAAATTAGAGTCGTAAATCTTCCGATTTTATATGCCTAATTTTAGTAGAGAAGTTTAAAAAAATGTTTTGAGCGAATCCAGGAAAAATCAAACACACAAAGTAACTCACCGCAATAGGATCCAACCCGAGCATTGGAGCAATAATTGATGGTGGAGGGTCATCATCGGTTTCGTTGAAAGTTGAGTTCATTGCAACTCGGAACTTTCAAAGCAAAATGAACAAAGTTGAGGGCGATGAACGAAGAAGCGAACGAGGCTCCACCCCCTTTTAAGACCAATTAAAGGGGCGGAGCTTTAGTCTTGAGAAGCGGGTTTTTAATCGGTATAAAATCTAAAATTATGTATAATTTGGTCATTTTGTTGGTGAAATATCACAAGGTAGCGGGAGAATAATTACAGATTACATAGAAAGAAGAATTCTTGGAAATCATTTTGCTCTGATACACATTTACTATTAGAAATGGATTTCTGATGATAAGTAGAAAAACGAAGAGAAAAAAAGTTTCGAAGAATGTGGATCAGAGATTTATACTTTGTACTCACTTTACAAAATACAAAAACGGAAGCTATACTACAAGGAACGATGGCGCATTTTTACCAAAAATAAAAAGCGAAACTCTGTGATCCGCCTAGATCCGGGAAAAAGTAGGCGAGCCAGTGATCATCCGAAAATGCATTCGTAAGTTCGAGATTTGTCGGATTAGGGATGAGCAATAGGAGAAAAATGCATTATTTTTCAGTTTGAAGTGATTAAAGGACACCAGCAAAAAAAACTGGCATATTTTTTAATTAACAAAATTCGAGAGTATCATGACAACATAAAACAAAGAT</canonical>
            <polymorphic>TGAAAAACCACTTTAATCAAGAAAAAGCTCAGAAAGACATGAAATCTCTGTGAAAATATTCATATTCAAATGAAACGTTTCGAAGGAGAAGAGGAAATAACATATCTCCCCCATAAATTTATGTTCTTTCCTCTTCCGCTTCTTGTCACGAGTCGCACCAGTTTCTATAGAAATTAGAGTCGTAAATCTTCCGATTTTATATGCCTAATTTTAGTAGAGAAGTTTAAAAAAATGTTTTGAGCGAATCCAGGAAAAATCAAACACACAAAGTAACTCACCGCAATAGGATCCAACCCGAGCATTGGAGCAATAATTGATGGTGGAGGGTCATCATCGGTTTCGTTGAAAGTTGAGTTCATTGCAACTCGGAACTTTCAAAGCAAAATGAACAAAGTTGAGGGCGATGAACGAAGAAGCGAACGAGGCTCCACCCCCTTTTAAGACCAATTAAAGGGGCGGAGCTTTAGTCTTGAGAAGCGGGTTTTTAATCGGTATAAAAYCTAAAATTATGTATAATTTGGTCATTTTGTTGGTGAAATATCACAAGGTAGCGGGAGAATAATTACAGATTACATAGAAAGAAGAATTCTTGGAAATCATTTTGCTCTGATACACATTTACTATTAGAAATGGATTTCTGATGATAAGTAGAAAAACGAAGAGAAAAAAAGTTTCGAAGAATGTGGATCAGAGATTTATACTTTGTACTCACTTTACAAAATACAAAAACGGAAGCTATACTACAAGGAACGATGGCGCATTTTTACCAAAAATAAAAAGCGAAACTCTGTGATCCGCCTAGATCCGGGAAAAAGTAGGCGAGCCAGTGATCATCCGAAAATGCATTCGTAAGTTCGAGATTTGTCGGATTAGGGATGAGCAATAGGAGAAAAATGCATTATTTTTCAGTTTGAAGTGATTAAAGGACACCAGCAAAAAAAACTGGCATATTTTTTAATTAACAAAATTCGAGAGTATCATGACAACATAAAACAAAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTTTCAAAGCAAAATGAAC</pcr_primer_p1>
		<pcr_primer_p2>AATGTGTATCAGAGCAAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAACTTTCAAAGCAAAATGAACAAAGTTGAGGGCGATGAACGAAGAAGCGAACGAGGCTCCACCCCCTTTTAAGACCAATTAAAGGGGCGGAGCTTTAGTCTTGAGAAGCGGGTTTTTAATCGGTATAAAATCTAAAATTATGTATAATTTGGTCATTTTGTTGGTGAAATATCACAAGGTAGCGGGAGAATAATTACAGATTACATAGAAAGAAGAATTCTTGGAAATCATTTTGCTCTGATACACATT</canonical_amplicon>
		<polymorphic_amplicon>GAACTTTCAAAGCAAAATGAACAAAGTTGAGGGCGATGAACGAAGAAGCGAACGAGGCTCCACCCCCTTTTAAGACCAATTAAAGGGGCGGAGCTTTAGTCTTGAGAAGCGGGTTTTTAATCGGTATAAAAYCTAAAATTATGTATAATTTGGTCATTTTGTTGGTGAAATATCACAAGGTAGCGGGAGAATAATTACAGATTACATAGAAAGAAGAATTCTTGGAAATCATTTTGCTCTGATACACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17485</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>138339</contig_pos>
        <strand>+</strand>
        <context>TTGAAAACTT[C/G]CGGAAAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTGTAATAGAAGGGCTCTCTTCCAAATGTGTTGTTTGTAATTGAAAACTT</left_flank>
        <right_flank>CGGAAAAAAAATATAAAAAGATATTTCGGGAATTCCACGGTTTCACAGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATCCAGCAATACGAAGACTAATGAAAAAACTCTTTAAAAACCTATTTTTAAAAATTGAAAAGTTCGAAAAATTAACAGAACCAAAAATGAGAAACACTCAAATTTCACATCCCATTTGGTTCGAATGAGAATTGGTTCAAATGACCTTCGTATATCGTCTTTCGTTTTGAAACACAATTTTTGAAAACCAGAAAAAAAAGGATGTTTGAGCTTCAAAGGGTCAAAATGAGAAGATAAGGGAACTCCTGATAACTGATTTGCAAATTGGAAAGGTTTGAAAAGGGGAGTTTTCTGATAAATTATGTTTGAGAATAATATTGACCTTCCGGGAAAACAGTTAACAAAAAACAATAAAATGCTTATTTGCCATACTTGAGCAGTCACTAATTTATTTATGGTGCTAACAGTCTAAAGGTTTTTCTATTTCAGATTAATACCGTAAACCCTGTAATAGAAGGGCTCTCTTCCAAATGTGTTGTTTGTAATTGAAAACTTCCGGAAAAAAAATATAAAAAGATATTTCGGGAATTCCACGGTTTCACAGAAATTGTTGAAAAACGCTTTTTTTTGCTCAAAAACTTGCTCAATTATTGTGAAATTGATAGATTTTAATGATTTTTTTTTTTGAAAATTCCCTGCATTTTTCAATGTAACATTTTGAAAAAAAGGAAAATAGAGAGAGGGACCCTCTAATTGGAGGGTCCTCCGGGAGTATCTTGGAACACTAGGCGGGCCGGCCCTTCCGCAGGTTTGTTTTTTTACGGGTTTTACAGTATATGAAATCAGTACTTCTGTGATCTCAATAACAGTCTCATGCCTCTGTTCCCTTTGATGTTCAAAAACTTTCGACCTTTCCCACTCATCACATCTATTAAATTTTGTCTTCACATTGCCTCTTTTTTCTCTCGAAACACATTGAAACTGCTGCTCATTTATCTGTCGAAATGCCTATAGAATATTTGAAGAGAGGGGCGAGAGACAACTGTCACTTTCTTT</canonical>
            <polymorphic>AAAAATCCAGCAATACGAAGACTAATGAAAAAACTCTTTAAAAACCTATTTTTAAAAATTGAAAAGTTCGAAAAATTAACAGAACCAAAAATGAGAAACACTCAAATTTCACATCCCATTTGGTTCGAATGAGAATTGGTTCAAATGACCTTCGTATATCGTCTTTCGTTTTGAAACACAATTTTTGAAAACCAGAAAAAAAAGGATGTTTGAGCTTCAAAGGGTCAAAATGAGAAGATAAGGGAACTCCTGATAACTGATTTGCAAATTGGAAAGGTTTGAAAAGGGGAGTTTTCTGATAAATTATGTTTGAGAATAATATTGACCTTCCGGGAAAACAGTTAACAAAAAACAATAAAATGCTTATTTGCCATACTTGAGCAGTCACTAATTTATTTATGGTGCTAACAGTCTAAAGGTTTTTCTATTTCAGATTAATACCGTAAACCCTGTAATAGAAGGGCTCTCTTCCAAATGTGTTGTTTGTAATTGAAAACTTSCGGAAAAAAAATATAAAAAGATATTTCGGGAATTCCACGGTTTCACAGAAATTGTTGAAAAACGCTTTTTTTTGCTCAAAAACTTGCTCAATTATTGTGAAATTGATAGATTTTAATGATTTTTTTTTTTGAAAATTCCCTGCATTTTTCAATGTAACATTTTGAAAAAAAGGAAAATAGAGAGAGGGACCCTCTAATTGGAGGGTCCTCCGGGAGTATCTTGGAACACTAGGCGGGCCGGCCCTTCCGCAGGTTTGTTTTTTTACGGGTTTTACAGTATATGAAATCAGTACTTCTGTGATCTCAATAACAGTCTCATGCCTCTGTTCCCTTTGATGTTCAAAAACTTTCGACCTTTCCCACTCATCACATCTATTAAATTTTGTCTTCACATTGCCTCTTTTTTCTCTCGAAACACATTGAAACTGCTGCTCATTTATCTGTCGAAATGCCTATAGAATATTTGAAGAGAGGGGCGAGAGACAACTGTCACTTTCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCCGGA</site>
                <isoschizomers>
                    <enzyme>AccIII</enzyme>
                    <enzyme>BseAI</enzyme>
                    <enzyme>BsiMI</enzyme>
                    <enzyme>Bsp13I</enzyme>
                    <enzyme>BspEI</enzyme>
                    <enzyme>BspMII</enzyme>
                    <enzyme>Kpn2I</enzyme>
                    <enzyme>MroI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>330 262 210 170 28</canonical_bands>
                <polymorphic_bands>380 330 262 28</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>382 251 249 91 27</canonical_bands>
                <polymorphic_bands>382 278 249 91</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAATGCTTATTTGCCATACTT</pcr_primer_p1>
		<pcr_primer_p2>CAATAATTGAGCAAGTTTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TAAAATGCTTATTTGCCATACTTGAGCAGTCACTAATTTATTTATGGTGCTAACAGTCTAAAGGTTTTTCTATTTCAGATTAATACCGTAAACCCTGTAATAGAAGGGCTCTCTTCCAAATGTGTTGTTTGTAATTGAAAACTTCCGGAAAAAAAATATAAAAAGATATTTCGGGAATTCCACGGTTTCACAGAAATTGTTGAAAAACGCTTTTTTTTGCTCAAAAACTTGCTCAATTATTG</canonical_amplicon>
		<polymorphic_amplicon>TAAAATGCTTATTTGCCATACTTGAGCAGTCACTAATTTATTTATGGTGCTAACAGTCTAAAGGTTTTTCTATTTCAGATTAATACCGTAAACCCTGTAATAGAAGGGCTCTCTTCCAAATGTGTTGTTTGTAATTGAAAACTTSCGGAAAAAAAATATAAAAAGATATTTCGGGAATTCCACGGTTTCACAGAAATTGTTGAAAAACGCTTTTTTTTGCTCAAAAACTTGCTCAATTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17489</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>138303</contig_pos>
        <strand></strand>
        <context>aayagaaggg[C/T]tctCTTCCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAGGTTTTTCTATTTCAGATTAATACCGTAAACCCTGTAATAGAAGGG</left_flank>
        <right_flank>TCTCTTCCAAATGTGTTGTTTGTAATTGAAAACTTCCGGAAAAAAAATAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTACTACTGGATCACATGCACTTCTTTAAATGGCAAAAATCCAGCAATACGAAGACTAATGAAAAAACTCTTTAAAAACCTATTTTTAAAAATTGAAAAGTTCGAAAAATTAACAGAACCAAAAATGAGAAACACTCAAATTTCACATCCCATTTGGTTCGAATGAGAATTGGTTCAAATGACCTTCGTATATCGTCTTTCGTTTTGAAACACAATTTTTGAAAACCAGAAAAAAAAGGATGTTTGAGCTTCAAAGGGTCAAAATGAGAAGATAAGGGAACTCCTGATAACTGATTTGCAAATTGGAAAGGTTTGAAAAGGGGAGTTTTCTGATAAATTATGTTTGAGAATAATATTGACCTTCCGGGAAAACAGTTAACAAAAAACAATAAAATGCTTATTTGCCATACTTGAGCAGTCACTAATTTATTTATGGTGCTAACAGTCTAAAGGTTTTTCTATTTCAGATTAATACCGTAAACCCTGTAATAGAAGGGCTCTCTTCCAAATGTGTTGTTTGTAATTGAAAACTTCCGGAAAAAAAATATAAAAAGATATTTCGGGAATTCCACGGTTTCACAGAAATTGTTGAAAAACGCTTTTTTTTGCTCAAAAACTTGCTCAATTATTGTGAAATTGATAGATTTTAATGATTTTTTTTTTTGAAAATTCCCTGCATTTTTCAATGTAACATTTTGAAAAAAAGGAAAATAGAGAGAGGGACCCTCTAATTGGAGGGTCCTCCGGGAGTATCTTGGAACACTAGGCGGGCCGGCCCTTCCGCAGGTTTGTTTTTTTACGGGTTTTACAGTATATGAAATCAGTACTTCTGTGATCTCAATAACAGTCTCATGCCTCTGTTCCCTTTGATGTTCAAAAACTTTCGACCTTTCCCACTCATCACATCTATTAAATTTTGTCTTCACATTGCCTCTTTTTTCTCTCGAAACACATTGAAACTGCTGCTCATTTATCTGTCGAAATGCCTATAGAATATT</canonical>
            <polymorphic>AATTACTACTGGATCACATGCACTTCTTTAAATGGCAAAAATCCAGCAATACGAAGACTAATGAAAAAACTCTTTAAAAACCTATTTTTAAAAATTGAAAAGTTCGAAAAATTAACAGAACCAAAAATGAGAAACACTCAAATTTCACATCCCATTTGGTTCGAATGAGAATTGGTTCAAATGACCTTCGTATATCGTCTTTCGTTTTGAAACACAATTTTTGAAAACCAGAAAAAAAAGGATGTTTGAGCTTCAAAGGGTCAAAATGAGAAGATAAGGGAACTCCTGATAACTGATTTGCAAATTGGAAAGGTTTGAAAAGGGGAGTTTTCTGATAAATTATGTTTGAGAATAATATTGACCTTCCGGGAAAACAGTTAACAAAAAACAATAAAATGCTTATTTGCCATACTTGAGCAGTCACTAATTTATTTATGGTGCTAACAGTCTAAAGGTTTTTCTATTTCAGATTAATACCGTAAACCCTGTAATAGAAGGGYTCTCTTCCAAATGTGTTGTTTGTAATTGAAAACTTCCGGAAAAAAAATATAAAAAGATATTTCGGGAATTCCACGGTTTCACAGAAATTGTTGAAAAACGCTTTTTTTTGCTCAAAAACTTGCTCAATTATTGTGAAATTGATAGATTTTAATGATTTTTTTTTTTGAAAATTCCCTGCATTTTTCAATGTAACATTTTGAAAAAAAGGAAAATAGAGAGAGGGACCCTCTAATTGGAGGGTCCTCCGGGAGTATCTTGGAACACTAGGCGGGCCGGCCCTTCCGCAGGTTTGTTTTTTTACGGGTTTTACAGTATATGAAATCAGTACTTCTGTGATCTCAATAACAGTCTCATGCCTCTGTTCCCTTTGATGTTCAAAAACTTTCGACCTTTCCCACTCATCACATCTATTAAATTTTGTCTTCACATTGCCTCTTTTTTCTCTCGAAACACATTGAAACTGCTGCTCATTTATCTGTCGAAATGCCTATAGAATATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>274 250 249 223 4</canonical_bands>
                <polymorphic_bands>523 250 223 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAATGCTTATTTGCCATACTT</pcr_primer_p1>
		<pcr_primer_p2>CAATAATTGAGCAAGTTTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TAAAATGCTTATTTGCCATACTTGAGCAGTCACTAATTTATTTATGGTGCTAACAGTCTAAAGGTTTTTCTATTTCAGATTAATACCGTAAACCCTGTAATAGAAGGGCTCTCTTCCAAATGTGTTGTTTGTAATTGAAAACTTCCGGAAAAAAAATATAAAAAGATATTTCGGGAATTCCACGGTTTCACAGAAATTGTTGAAAAACGCTTTTTTTTGCTCAAAAACTTGCTCAATTATTG</canonical_amplicon>
		<polymorphic_amplicon>TAAAATGCTTATTTGCCATACTTGAGCAGTCACTAATTTATTTATGGTGCTAACAGTCTAAAGGTTTTTCTATTTCAGATTAATACCGTAAACCCTGTAATAGAAGGGYTCTCTTCCAAATGTGTTGTTTGTAATTGAAAACTTCCGGAAAAAAAATATAAAAAGATATTTCGGGAATTCCACGGTTTCACAGAAATTGTTGAAAAACGCTTTTTTTTGCTCAAAAACTTGCTCAATTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17497</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>138295</contig_pos>
        <strand></strand>
        <context>aaccctgtaa[T/C]agaagggytc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAACAGTCTAAAGGTTTTTCTATTTCAGATTAATACCGTAAACCCTGTAA</left_flank>
        <right_flank>AGAAGGGCTCTCTTCCAAATGTGTTGTTTGTAATTGAAAACTTCCGGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTAAAAAATTACTACTGGATCACATGCACTTCTTTAAATGGCAAAAATCCAGCAATACGAAGACTAATGAAAAAACTCTTTAAAAACCTATTTTTAAAAATTGAAAAGTTCGAAAAATTAACAGAACCAAAAATGAGAAACACTCAAATTTCACATCCCATTTGGTTCGAATGAGAATTGGTTCAAATGACCTTCGTATATCGTCTTTCGTTTTGAAACACAATTTTTGAAAACCAGAAAAAAAAGGATGTTTGAGCTTCAAAGGGTCAAAATGAGAAGATAAGGGAACTCCTGATAACTGATTTGCAAATTGGAAAGGTTTGAAAAGGGGAGTTTTCTGATAAATTATGTTTGAGAATAATATTGACCTTCCGGGAAAACAGTTAACAAAAAACAATAAAATGCTTATTTGCCATACTTGAGCAGTCACTAATTTATTTATGGTGCTAACAGTCTAAAGGTTTTTCTATTTCAGATTAATACCGTAAACCCTGTAATAGAAGGGCTCTCTTCCAAATGTGTTGTTTGTAATTGAAAACTTCCGGAAAAAAAATATAAAAAGATATTTCGGGAATTCCACGGTTTCACAGAAATTGTTGAAAAACGCTTTTTTTTGCTCAAAAACTTGCTCAATTATTGTGAAATTGATAGATTTTAATGATTTTTTTTTTTGAAAATTCCCTGCATTTTTCAATGTAACATTTTGAAAAAAAGGAAAATAGAGAGAGGGACCCTCTAATTGGAGGGTCCTCCGGGAGTATCTTGGAACACTAGGCGGGCCGGCCCTTCCGCAGGTTTGTTTTTTTACGGGTTTTACAGTATATGAAATCAGTACTTCTGTGATCTCAATAACAGTCTCATGCCTCTGTTCCCTTTGATGTTCAAAAACTTTCGACCTTTCCCACTCATCACATCTATTAAATTTTGTCTTCACATTGCCTCTTTTTTCTCTCGAAACACATTGAAACTGCTGCTCATTTATCTGTCGAAATGCCTAT</canonical>
            <polymorphic>AATTAAAAAATTACTACTGGATCACATGCACTTCTTTAAATGGCAAAAATCCAGCAATACGAAGACTAATGAAAAAACTCTTTAAAAACCTATTTTTAAAAATTGAAAAGTTCGAAAAATTAACAGAACCAAAAATGAGAAACACTCAAATTTCACATCCCATTTGGTTCGAATGAGAATTGGTTCAAATGACCTTCGTATATCGTCTTTCGTTTTGAAACACAATTTTTGAAAACCAGAAAAAAAAGGATGTTTGAGCTTCAAAGGGTCAAAATGAGAAGATAAGGGAACTCCTGATAACTGATTTGCAAATTGGAAAGGTTTGAAAAGGGGAGTTTTCTGATAAATTATGTTTGAGAATAATATTGACCTTCCGGGAAAACAGTTAACAAAAAACAATAAAATGCTTATTTGCCATACTTGAGCAGTCACTAATTTATTTATGGTGCTAACAGTCTAAAGGTTTTTCTATTTCAGATTAATACCGTAAACCCTGTAAYAGAAGGGCTCTCTTCCAAATGTGTTGTTTGTAATTGAAAACTTCCGGAAAAAAAATATAAAAAGATATTTCGGGAATTCCACGGTTTCACAGAAATTGTTGAAAAACGCTTTTTTTTGCTCAAAAACTTGCTCAATTATTGTGAAATTGATAGATTTTAATGATTTTTTTTTTTGAAAATTCCCTGCATTTTTCAATGTAACATTTTGAAAAAAAGGAAAATAGAGAGAGGGACCCTCTAATTGGAGGGTCCTCCGGGAGTATCTTGGAACACTAGGCGGGCCGGCCCTTCCGCAGGTTTGTTTTTTTACGGGTTTTACAGTATATGAAATCAGTACTTCTGTGATCTCAATAACAGTCTCATGCCTCTGTTCCCTTTGATGTTCAAAAACTTTCGACCTTTCCCACTCATCACATCTATTAAATTTTGTCTTCACATTGCCTCTTTTTTCTCTCGAAACACATTGAAACTGCTGCTCATTTATCTGTCGAAATGCCTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAATGCTTATTTGCCATACTT</pcr_primer_p1>
		<pcr_primer_p2>CAATAATTGAGCAAGTTTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TAAAATGCTTATTTGCCATACTTGAGCAGTCACTAATTTATTTATGGTGCTAACAGTCTAAAGGTTTTTCTATTTCAGATTAATACCGTAAACCCTGTAATAGAAGGGCTCTCTTCCAAATGTGTTGTTTGTAATTGAAAACTTCCGGAAAAAAAATATAAAAAGATATTTCGGGAATTCCACGGTTTCACAGAAATTGTTGAAAAACGCTTTTTTTTGCTCAAAAACTTGCTCAATTATTG</canonical_amplicon>
		<polymorphic_amplicon>TAAAATGCTTATTTGCCATACTTGAGCAGTCACTAATTTATTTATGGTGCTAACAGTCTAAAGGTTTTTCTATTTCAGATTAATACCGTAAACCCTGTAAYAGAAGGGCTCTCTTCCAAATGTGTTGTTTGTAATTGAAAACTTCCGGAAAAAAAATATAAAAAGATATTTCGGGAATTCCACGGTTTCACAGAAATTGTTGAAAAACGCTTTTTTTTGCTCAAAAACTTGCTCAATTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17516</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>137955</contig_pos>
        <strand>+</strand>
        <context>ATTTCACATC[C/T]CATTTGGTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTCGAAAAATTAACAGAACCAAAAATGAGAAACACTCAAATTTCACATC</left_flank>
        <right_flank>CATTTGGTTCGAATGAGAATTGGTTCAAATGACCTTCGTATATCGTCTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAAAGAAACGAAAAAAGGGAATAGGTAAATTGAAAAAAAAAACGCTTTCATATTGAAGATCAGAGATGGTTGACTTTGTTTTTATTGAAATTAGATACTTTAATATTCAAAAAATGTTGAAAATAAATTTAGATTTTTTGAACAGGTGATCAGATGGTTTTCTGGTAAAAATACATGCAAAGTGCATAACAAGTTTGCAGATTGAACTTTAAATCTACTTTTATAAAGTTTCCCTACAATTATTGACCAAACTAGCGTTCAATGCAAAAATGTTGTTTGATAATCAAACTCATGAGAAAAAAAATTGCTGGGTACGAGAATTATGAAAAAAGTTTCCAAATTAAAAAATTACTACTGGATCACATGCACTTCTTTAAATGGCAAAAATCCAGCAATACGAAGACTAATGAAAAAACTCTTTAAAAACCTATTTTTAAAAATTGAAAAGTTCGAAAAATTAACAGAACCAAAAATGAGAAACACTCAAATTTCACATCCCATTTGGTTCGAATGAGAATTGGTTCAAATGACCTTCGTATATCGTCTTTCGTTTTGAAACACAATTTTTGAAAACCAGAAAAAAAAGGATGTTTGAGCTTCAAAGGGTCAAAATGAGAAGATAAGGGAACTCCTGATAACTGATTTGCAAATTGGAAAGGTTTGAAAAGGGGAGTTTTCTGATAAATTATGTTTGAGAATAATATTGACCTTCCGGGAAAACAGTTAACAAAAAACAATAAAATGCTTATTTGCCATACTTGAGCAGTCACTAATTTATTTATGGTGCTAACAGTCTAAAGGTTTTTCTATTTCAGATTAATACCGTAAACCCTGTAATAGAAGGGCTCTCTTCCAAATGTGTTGTTTGTAATTGAAAACTTCCGGAAAAAAAATATAAAAAGATATTTCGGGAATTCCACGGTTTCACAGAAATTGTTGAAAAACGCTTTTTTTTGCTCAAAAACTTGCTCAATTATTGTGAAATTGATAGATTTTAA</canonical>
            <polymorphic>AGAAAAGAAACGAAAAAAGGGAATAGGTAAATTGAAAAAAAAAACGCTTTCATATTGAAGATCAGAGATGGTTGACTTTGTTTTTATTGAAATTAGATACTTTAATATTCAAAAAATGTTGAAAATAAATTTAGATTTTTTGAACAGGTGATCAGATGGTTTTCTGGTAAAAATACATGCAAAGTGCATAACAAGTTTGCAGATTGAACTTTAAATCTACTTTTATAAAGTTTCCCTACAATTATTGACCAAACTAGCGTTCAATGCAAAAATGTTGTTTGATAATCAAACTCATGAGAAAAAAAATTGCTGGGTACGAGAATTATGAAAAAAGTTTCCAAATTAAAAAATTACTACTGGATCACATGCACTTCTTTAAATGGCAAAAATCCAGCAATACGAAGACTAATGAAAAAACTCTTTAAAAACCTATTTTTAAAAATTGAAAAGTTCGAAAAATTAACAGAACCAAAAATGAGAAACACTCAAATTTCACATCYCATTTGGTTCGAATGAGAATTGGTTCAAATGACCTTCGTATATCGTCTTTCGTTTTGAAACACAATTTTTGAAAACCAGAAAAAAAAGGATGTTTGAGCTTCAAAGGGTCAAAATGAGAAGATAAGGGAACTCCTGATAACTGATTTGCAAATTGGAAAGGTTTGAAAAGGGGAGTTTTCTGATAAATTATGTTTGAGAATAATATTGACCTTCCGGGAAAACAGTTAACAAAAAACAATAAAATGCTTATTTGCCATACTTGAGCAGTCACTAATTTATTTATGGTGCTAACAGTCTAAAGGTTTTTCTATTTCAGATTAATACCGTAAACCCTGTAATAGAAGGGCTCTCTTCCAAATGTGTTGTTTGTAATTGAAAACTTCCGGAAAAAAAATATAAAAAGATATTTCGGGAATTCCACGGTTTCACAGAAATTGTTGAAAAACGCTTTTTTTTGCTCAAAAACTTGCTCAATTATTGTGAAATTGATAGATTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAATACGAAGACTAATGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAGTTATCAGGAGTTCCCTTATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCAATACGAAGACTAATGAAAAAACTCTTTAAAAACCTATTTTTAAAAATTGAAAAGTTCGAAAAATTAACAGAACCAAAAATGAGAAACACTCAAATTTCACATCCCATTTGGTTCGAATGAGAATTGGTTCAAATGACCTTCGTATATCGTCTTTCGTTTTGAAACACAATTTTTGAAAACCAGAAAAAAAAGGATGTTTGAGCTTCAAAGGGTCAAAATGAGAAGATAAGGGAACTCCTGATAACTG</canonical_amplicon>
		<polymorphic_amplicon>GCAATACGAAGACTAATGAAAAAACTCTTTAAAAACCTATTTTTAAAAATTGAAAAGTTCGAAAAATTAACAGAACCAAAAATGAGAAACACTCAAATTTCACATCYCATTTGGTTCGAATGAGAATTGGTTCAAATGACCTTCGTATATCGTCTTTCGTTTTGAAACACAATTTTTGAAAACCAGAAAAAAAAGGATGTTTGAGCTTCAAAGGGTCAAAATGAGAAGATAAGGGAACTCCTGATAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17517</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>137915</contig_pos>
        <strand>+</strand>
        <context>GTTCGAAAAA[G/T]TAACAGAACC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAAAAAACTCTTTAAAAACCTATTTTTAAAAATTGAAAAGTTCGAAAAA</left_flank>
        <right_flank>TAACAGAACCAAAAATGAGAAACACTCAAATTTCACATCCCATTTGGTTC</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGTTTGGTAAGAGGGATGAAGTGAAAAGTGGGACGAATTAGAAAAGAAACGAAAAAAGGGAATAGGTAAATTGAAAAAAAAAACGCTTTCATATTGAAGATCAGAGATGGTTGACTTTGTTTTTATTGAAATTAGATACTTTAATATTCAAAAAATGTTGAAAATAAATTTAGATTTTTTGAACAGGTGATCAGATGGTTTTCTGGTAAAAATACATGCAAAGTGCATAACAAGTTTGCAGATTGAACTTTAAATCTACTTTTATAAAGTTTCCCTACAATTATTGACCAAACTAGCGTTCAATGCAAAAATGTTGTTTGATAATCAAACTCATGAGAAAAAAAATTGCTGGGTACGAGAATTATGAAAAAAGTTTCCAAATTAAAAAATTACTACTGGATCACATGCACTTCTTTAAATGGCAAAAATCCAGCAATACGAAGACTAATGAAAAAACTCTTTAAAAACCTATTTTTAAAAATTGAAAAGTTCGAAAAATTAACAGAACCAAAAATGAGAAACACTCAAATTTCACATCCCATTTGGTTCGAATGAGAATTGGTTCAAATGACCTTCGTATATCGTCTTTCGTTTTGAAACACAATTTTTGAAAACCAGAAAAAAAAGGATGTTTGAGCTTCAAAGGGTCAAAATGAGAAGATAAGGGAACTCCTGATAACTGATTTGCAAATTGGAAAGGTTTGAAAAGGGGAGTTTTCTGATAAATTATGTTTGAGAATAATATTGACCTTCCGGGAAAACAGTTAACAAAAAACAATAAAATGCTTATTTGCCATACTTGAGCAGTCACTAATTTATTTATGGTGCTAACAGTCTAAAGGTTTTTCTATTTCAGATTAATACCGTAAACCCTGTAATAGAAGGGCTCTCTTCCAAATGTGTTGTTTGTAATTGAAAACTTCCGGAAAAAAAATATAAAAAGATATTTCGGGAATTCCACGGTTTCACAGAAATTGTTGAAAAACGCTTTTTTTTGCT</canonical>
            <polymorphic>GAGTTTGGTAAGAGGGATGAAGTGAAAAGTGGGACGAATTAGAAAAGAAACGAAAAAAGGGAATAGGTAAATTGAAAAAAAAAACGCTTTCATATTGAAGATCAGAGATGGTTGACTTTGTTTTTATTGAAATTAGATACTTTAATATTCAAAAAATGTTGAAAATAAATTTAGATTTTTTGAACAGGTGATCAGATGGTTTTCTGGTAAAAATACATGCAAAGTGCATAACAAGTTTGCAGATTGAACTTTAAATCTACTTTTATAAAGTTTCCCTACAATTATTGACCAAACTAGCGTTCAATGCAAAAATGTTGTTTGATAATCAAACTCATGAGAAAAAAAATTGCTGGGTACGAGAATTATGAAAAAAGTTTCCAAATTAAAAAATTACTACTGGATCACATGCACTTCTTTAAATGGCAAAAATCCAGCAATACGAAGACTAATGAAAAAACTCTTTAAAAACCTATTTTTAAAAATTGAAAAGTTCGAAAAAKTAACAGAACCAAAAATGAGAAACACTCAAATTTCACATCCCATTTGGTTCGAATGAGAATTGGTTCAAATGACCTTCGTATATCGTCTTTCGTTTTGAAACACAATTTTTGAAAACCAGAAAAAAAAGGATGTTTGAGCTTCAAAGGGTCAAAATGAGAAGATAAGGGAACTCCTGATAACTGATTTGCAAATTGGAAAGGTTTGAAAAGGGGAGTTTTCTGATAAATTATGTTTGAGAATAATATTGACCTTCCGGGAAAACAGTTAACAAAAAACAATAAAATGCTTATTTGCCATACTTGAGCAGTCACTAATTTATTTATGGTGCTAACAGTCTAAAGGTTTTTCTATTTCAGATTAATACCGTAAACCCTGTAATAGAAGGGCTCTCTTCCAAATGTGTTGTTTGTAATTGAAAACTTCCGGAAAAAAAATATAAAAAGATATTTCGGGAATTCCACGGTTTCACAGAAATTGTTGAAAAACGCTTTTTTTTGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>266 142 141 132 109 93 46 33 24 14</canonical_bands>
                <polymorphic_bands>290 142 141 132 109 93 46 33 14</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>112 98 92 88 87 65 61 46 43 37 36 35 33 31 29 27 20 19 17 16 8</canonical_bands>
                <polymorphic_bands>112 98 92 88 87 65 61 48 46 43 37 36 35 33 29 27 20 19 16 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAATACGAAGACTAATGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAGTTATCAGGAGTTCCCTTATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCAATACGAAGACTAATGAAAAAACTCTTTAAAAACCTATTTTTAAAAATTGAAAAGTTCGAAAAATTAACAGAACCAAAAATGAGAAACACTCAAATTTCACATCCCATTTGGTTCGAATGAGAATTGGTTCAAATGACCTTCGTATATCGTCTTTCGTTTTGAAACACAATTTTTGAAAACCAGAAAAAAAAGGATGTTTGAGCTTCAAAGGGTCAAAATGAGAAGATAAGGGAACTCCTGATAACTG</canonical_amplicon>
		<polymorphic_amplicon>GCAATACGAAGACTAATGAAAAAACTCTTTAAAAACCTATTTTTAAAAATTGAAAAGTTCGAAAAAKTAACAGAACCAAAAATGAGAAACACTCAAATTTCACATCCCATTTGGTTCGAATGAGAATTGGTTCAAATGACCTTCGTATATCGTCTTTCGTTTTGAAACACAATTTTTGAAAACCAGAAAAAAAAGGATGTTTGAGCTTCAAAGGGTCAAAATGAGAAGATAAGGGAACTCCTGATAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17518</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>137899</contig_pos>
        <strand>+</strand>
        <context>TTTTAAAAAT[C/T]GAAAAGTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCAATACGAAGACTAATGAAAAAACTCTTTAAAAACCTATTTTTAAAAAT</left_flank>
        <right_flank>GAAAAGTTCGAAAAATTAACAGAACCAAAAATGAGAAACACTCAAATTTC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAAAAAATCCAATATGAGTTTGGTAAGAGGGATGAAGTGAAAAGTGGGACGAATTAGAAAAGAAACGAAAAAAGGGAATAGGTAAATTGAAAAAAAAAACGCTTTCATATTGAAGATCAGAGATGGTTGACTTTGTTTTTATTGAAATTAGATACTTTAATATTCAAAAAATGTTGAAAATAAATTTAGATTTTTTGAACAGGTGATCAGATGGTTTTCTGGTAAAAATACATGCAAAGTGCATAACAAGTTTGCAGATTGAACTTTAAATCTACTTTTATAAAGTTTCCCTACAATTATTGACCAAACTAGCGTTCAATGCAAAAATGTTGTTTGATAATCAAACTCATGAGAAAAAAAATTGCTGGGTACGAGAATTATGAAAAAAGTTTCCAAATTAAAAAATTACTACTGGATCACATGCACTTCTTTAAATGGCAAAAATCCAGCAATACGAAGACTAATGAAAAAACTCTTTAAAAACCTATTTTTAAAAATTGAAAAGTTCGAAAAATTAACAGAACCAAAAATGAGAAACACTCAAATTTCACATCCCATTTGGTTCGAATGAGAATTGGTTCAAATGACCTTCGTATATCGTCTTTCGTTTTGAAACACAATTTTTGAAAACCAGAAAAAAAAGGATGTTTGAGCTTCAAAGGGTCAAAATGAGAAGATAAGGGAACTCCTGATAACTGATTTGCAAATTGGAAAGGTTTGAAAAGGGGAGTTTTCTGATAAATTATGTTTGAGAATAATATTGACCTTCCGGGAAAACAGTTAACAAAAAACAATAAAATGCTTATTTGCCATACTTGAGCAGTCACTAATTTATTTATGGTGCTAACAGTCTAAAGGTTTTTCTATTTCAGATTAATACCGTAAACCCTGTAATAGAAGGGCTCTCTTCCAAATGTGTTGTTTGTAATTGAAAACTTCCGGAAAAAAAATATAAAAAGATATTTCGGGAATTCCACGGTTTCACAGAAATTGTTGAAA</canonical>
            <polymorphic>TTAAAAAATCCAATATGAGTTTGGTAAGAGGGATGAAGTGAAAAGTGGGACGAATTAGAAAAGAAACGAAAAAAGGGAATAGGTAAATTGAAAAAAAAAACGCTTTCATATTGAAGATCAGAGATGGTTGACTTTGTTTTTATTGAAATTAGATACTTTAATATTCAAAAAATGTTGAAAATAAATTTAGATTTTTTGAACAGGTGATCAGATGGTTTTCTGGTAAAAATACATGCAAAGTGCATAACAAGTTTGCAGATTGAACTTTAAATCTACTTTTATAAAGTTTCCCTACAATTATTGACCAAACTAGCGTTCAATGCAAAAATGTTGTTTGATAATCAAACTCATGAGAAAAAAAATTGCTGGGTACGAGAATTATGAAAAAAGTTTCCAAATTAAAAAATTACTACTGGATCACATGCACTTCTTTAAATGGCAAAAATCCAGCAATACGAAGACTAATGAAAAAACTCTTTAAAAACCTATTTTTAAAAATYGAAAAGTTCGAAAAATTAACAGAACCAAAAATGAGAAACACTCAAATTTCACATCCCATTTGGTTCGAATGAGAATTGGTTCAAATGACCTTCGTATATCGTCTTTCGTTTTGAAACACAATTTTTGAAAACCAGAAAAAAAAGGATGTTTGAGCTTCAAAGGGTCAAAATGAGAAGATAAGGGAACTCCTGATAACTGATTTGCAAATTGGAAAGGTTTGAAAAGGGGAGTTTTCTGATAAATTATGTTTGAGAATAATATTGACCTTCCGGGAAAACAGTTAACAAAAAACAATAAAATGCTTATTTGCCATACTTGAGCAGTCACTAATTTATTTATGGTGCTAACAGTCTAAAGGTTTTTCTATTTCAGATTAATACCGTAAACCCTGTAATAGAAGGGCTCTCTTCCAAATGTGTTGTTTGTAATTGAAAACTTCCGGAAAAAAAATATAAAAAGATATTTCGGGAATTCCACGGTTTCACAGAAATTGTTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>112 98 92 88 87 65 61 52 46 43 37 35 33 31 29 20 19 17 16 11 8</canonical_bands>
                <polymorphic_bands>112 109 98 88 87 65 61 52 46 43 37 35 33 31 29 20 19 16 11 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGGGTACGAGAATTATGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAAACGAAAGACGATATAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTGGGTACGAGAATTATGAAAAAAGTTTCCAAATTAAAAAATTACTACTGGATCACATGCACTTCTTTAAATGGCAAAAATCCAGCAATACGAAGACTAATGAAAAAACTCTTTAAAAACCTATTTTTAAAAATTGAAAAGTTCGAAAAATTAACAGAACCAAAAATGAGAAACACTCAAATTTCACATCCCATTTGGTTCGAATGAGAATTGGTTCAAATGACCTTCGTATATCGTCTTTCGTTTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>CTGGGTACGAGAATTATGAAAAAAGTTTCCAAATTAAAAAATTACTACTGGATCACATGCACTTCTTTAAATGGCAAAAATCCAGCAATACGAAGACTAATGAAAAAACTCTTTAAAAACCTATTTTTAAAAATYGAAAAGTTCGAAAAATTAACAGAACCAAAAATGAGAAACACTCAAATTTCACATCCCATTTGGTTCGAATGAGAATTGGTTCAAATGACCTTCGTATATCGTCTTTCGTTTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17519</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>157586</contig_pos>
        <strand></strand>
        <context>TTGTTCTCAA[T/G]AATAATTATG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AAACTAATATGATTTTATCAAAATTCTATTTAAAAAAAAGTTGTTCTCAA</left_flank>
        <right_flank>AATAATTATGGATTGTAGAGATTTTTTAAAGGACCAGAGTTTCATAGTAG</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTAACCCAAACCTCTTTTCTTTTTCCCTTTTTCTGTTTTCCCCATGACGATACGTATTTGTTTCGAAGAACCGATTTTTGAATTTTCTGAACAATAGCTTTACTCTGGTGCGTTTTCTTGGCGTTGGGTGTAATTTATGGTATCACAAATTTTTTTGATTAAAGTTTGGAATGAAATTTTCAGATTTGGTTTATGTCTGCCTGATTTTCACGAAATCATTGTTGAAGACATCAGTTTAGGAACTTTCTATGTGTTATAGATCCCATGGCCTCCGAGTACTTATTTGTACTCATTTTCATCGTTGCTGCGGATTTTACCCCCGTGGCAAACTAAACATGAAAAGTGTTCAGAAAGATTTCGTTTCAGGATACTGCACCACCTACAACTATTTTGATGCGAAATAAAGATATGTGTGGAAAACTGATCAACTAATGAAAGATGCGACATAAACTAATATGATTTTATCAAAATTCTATTTAAAAAAAAGTTGTTCTCAATAATAATTATGGATTGTAGAGATTTTTTAAAGGACCAGAGTTTCATAGTAGAGCCAAATTTTTCAAATTGGACAGGGTATATTTGACATTGTTTACTAAAGCCTATATGAAATGAAAATGAAAATTATTTAAAAATAAGCTTCTCCTGAATCTTTTCTTATTTTCAAGGTTCTTCAATCCATCATATCTCATCCTCCCGACGTCTAGAAAGCATTCAATATCAAATTAGCATTTATCTACAATATGATCATATTCTGGTGACGTCTTCATCGTTCCTATTCAGATAGTGATTAACATTAACATCCATAGAAGCTGAACCAAGCGGTTTCGTACTGCTTAATGTTATCAGACTACAGTAAATATACAAATAAAGAGAGAAAAGGGAGGAGAGGACTTGATTTGTCGTTGTGTATTGGTAGAAGCTAATTTTAAGAATTGGCTGTAAAATAATTGAGCTTATCGAACATTTGAAAAATGGGAAATTTGCGAAAATTTGTTTGA</canonical>
            <polymorphic>TTTTAACCCAAACCTCTTTTCTTTTTCCCTTTTTCTGTTTTCCCCATGACGATACGTATTTGTTTCGAAGAACCGATTTTTGAATTTTCTGAACAATAGCTTTACTCTGGTGCGTTTTCTTGGCGTTGGGTGTAATTTATGGTATCACAAATTTTTTTGATTAAAGTTTGGAATGAAATTTTCAGATTTGGTTTATGTCTGCCTGATTTTCACGAAATCATTGTTGAAGACATCAGTTTAGGAACTTTCTATGTGTTATAGATCCCATGGCCTCCGAGTACTTATTTGTACTCATTTTCATCGTTGCTGCGGATTTTACCCCCGTGGCAAACTAAACATGAAAAGTGTTCAGAAAGATTTCGTTTCAGGATACTGCACCACCTACAACTATTTTGATGCGAAATAAAGATATGTGTGGAAAACTGATCAACTAATGAAAGATGCGACATAAACTAATATGATTTTATCAAAATTCTATTTAAAAAAAAGTTGTTCTCAAKAATAATTATGGATTGTAGAGATTTTTTAAAGGACCAGAGTTTCATAGTAGAGCCAAATTTTTCAAATTGGACAGGGTATATTTGACATTGTTTACTAAAGCCTATATGAAATGAAAATGAAAATTATTTAAAAATAAGCTTCTCCTGAATCTTTTCTTATTTTCAAGGTTCTTCAATCCATCATATCTCATCCTCCCGACGTCTAGAAAGCATTCAATATCAAATTAGCATTTATCTACAATATGATCATATTCTGGTGACGTCTTCATCGTTCCTATTCAGATAGTGATTAACATTAACATCCATAGAAGCTGAACCAAGCGGTTTCGTACTGCTTAATGTTATCAGACTACAGTAAATATACAAATAAAGAGAGAAAAGGGAGGAGAGGACTTGATTTGTCGTTGTGTATTGGTAGAAGCTAATTTTAAGAATTGGCTGTAAAATAATTGAGCTTATCGAACATTTGAAAAATGGGAAATTTGCGAAAATTTGTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTAATGAAAGATGCGACATAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGAACCTTGAAAATAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AACTAATGAAAGATGCGACATAAACTAATATGATTTTATCAAAATTCTATTTAAAAAAAAGTTGTTCTCAATAATAATTATGGATTGTAGAGATTTTTTAAAGGACCAGAGTTTCATAGTAGAGCCAAATTTTTCAAATTGGACAGGGTATATTTGACATTGTTTACTAAAGCCTATATGAAATGAAAATGAAAATTATTTAAAAATAAGCTTCTCCTGAATCTTTTCTTATTTTCAAGGTTCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>AACTAATGAAAGATGCGACATAAACTAATATGATTTTATCAAAATTCTATTTAAAAAAAAGTTGTTCTCAAKAATAATTATGGATTGTAGAGATTTTTTAAAGGACCAGAGTTTCATAGTAGAGCCAAATTTTTCAAATTGGACAGGGTATATTTGACATTGTTTACTAAAGCCTATATGAAATGAAAATGAAAATTATTTAAAAATAAGCTTCTCCTGAATCTTTTCTTATTTTCAAGGTTCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17520</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>157601</contig_pos>
        <strand></strand>
        <context>ATTATGGATT[G/T]TAGAGATTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATCAAAATTCTATTTAAAAAAAAGTTGTTCTCAATAATAATTATGGATT</left_flank>
        <right_flank>TAGAGATTTTTTAAAGGACCAGAGTTTCATAGTAGAGCCAAATTTTTCAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTCTTTTTCCCTTTTTCTGTTTTCCCCATGACGATACGTATTTGTTTCGAAGAACCGATTTTTGAATTTTCTGAACAATAGCTTTACTCTGGTGCGTTTTCTTGGCGTTGGGTGTAATTTATGGTATCACAAATTTTTTTGATTAAAGTTTGGAATGAAATTTTCAGATTTGGTTTATGTCTGCCTGATTTTCACGAAATCATTGTTGAAGACATCAGTTTAGGAACTTTCTATGTGTTATAGATCCCATGGCCTCCGAGTACTTATTTGTACTCATTTTCATCGTTGCTGCGGATTTTACCCCCGTGGCAAACTAAACATGAAAAGTGTTCAGAAAGATTTCGTTTCAGGATACTGCACCACCTACAACTATTTTGATGCGAAATAAAGATATGTGTGGAAAACTGATCAACTAATGAAAGATGCGACATAAACTAATATGATTTTATCAAAATTCTATTTAAAAAAAAGTTGTTCTCAATAATAATTATGGATTGTAGAGATTTTTTAAAGGACCAGAGTTTCATAGTAGAGCCAAATTTTTCAAATTGGACAGGGTATATTTGACATTGTTTACTAAAGCCTATATGAAATGAAAATGAAAATTATTTAAAAATAAGCTTCTCCTGAATCTTTTCTTATTTTCAAGGTTCTTCAATCCATCATATCTCATCCTCCCGACGTCTAGAAAGCATTCAATATCAAATTAGCATTTATCTACAATATGATCATATTCTGGTGACGTCTTCATCGTTCCTATTCAGATAGTGATTAACATTAACATCCATAGAAGCTGAACCAAGCGGTTTCGTACTGCTTAATGTTATCAGACTACAGTAAATATACAAATAAAGAGAGAAAAGGGAGGAGAGGACTTGATTTGTCGTTGTGTATTGGTAGAAGCTAATTTTAAGAATTGGCTGTAAAATAATTGAGCTTATCGAACATTTGAAAAATGGGAAATTTGCGAAAATTTGTTTGAATATTTGTTTCTAAC</canonical>
            <polymorphic>CTTTTCTTTTTCCCTTTTTCTGTTTTCCCCATGACGATACGTATTTGTTTCGAAGAACCGATTTTTGAATTTTCTGAACAATAGCTTTACTCTGGTGCGTTTTCTTGGCGTTGGGTGTAATTTATGGTATCACAAATTTTTTTGATTAAAGTTTGGAATGAAATTTTCAGATTTGGTTTATGTCTGCCTGATTTTCACGAAATCATTGTTGAAGACATCAGTTTAGGAACTTTCTATGTGTTATAGATCCCATGGCCTCCGAGTACTTATTTGTACTCATTTTCATCGTTGCTGCGGATTTTACCCCCGTGGCAAACTAAACATGAAAAGTGTTCAGAAAGATTTCGTTTCAGGATACTGCACCACCTACAACTATTTTGATGCGAAATAAAGATATGTGTGGAAAACTGATCAACTAATGAAAGATGCGACATAAACTAATATGATTTTATCAAAATTCTATTTAAAAAAAAGTTGTTCTCAATAATAATTATGGATTKTAGAGATTTTTTAAAGGACCAGAGTTTCATAGTAGAGCCAAATTTTTCAAATTGGACAGGGTATATTTGACATTGTTTACTAAAGCCTATATGAAATGAAAATGAAAATTATTTAAAAATAAGCTTCTCCTGAATCTTTTCTTATTTTCAAGGTTCTTCAATCCATCATATCTCATCCTCCCGACGTCTAGAAAGCATTCAATATCAAATTAGCATTTATCTACAATATGATCATATTCTGGTGACGTCTTCATCGTTCCTATTCAGATAGTGATTAACATTAACATCCATAGAAGCTGAACCAAGCGGTTTCGTACTGCTTAATGTTATCAGACTACAGTAAATATACAAATAAAGAGAGAAAAGGGAGGAGAGGACTTGATTTGTCGTTGTGTATTGGTAGAAGCTAATTTTAAGAATTGGCTGTAAAATAATTGAGCTTATCGAACATTTGAAAAATGGGAAATTTGCGAAAATTTGTTTGAATATTTGTTTCTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTAATGAAAGATGCGACATAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGAACCTTGAAAATAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AACTAATGAAAGATGCGACATAAACTAATATGATTTTATCAAAATTCTATTTAAAAAAAAGTTGTTCTCAATAATAATTATGGATTGTAGAGATTTTTTAAAGGACCAGAGTTTCATAGTAGAGCCAAATTTTTCAAATTGGACAGGGTATATTTGACATTGTTTACTAAAGCCTATATGAAATGAAAATGAAAATTATTTAAAAATAAGCTTCTCCTGAATCTTTTCTTATTTTCAAGGTTCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>AACTAATGAAAGATGCGACATAAACTAATATGATTTTATCAAAATTCTATTTAAAAAAAAGTTGTTCTCAATAATAATTATGGATTKTAGAGATTTTTTAAAGGACCAGAGTTTCATAGTAGAGCCAAATTTTTCAAATTGGACAGGGTATATTTGACATTGTTTACTAAAGCCTATATGAAATGAAAATGAAAATTATTTAAAAATAAGCTTCTCCTGAATCTTTTCTTATTTTCAAGGTTCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17521</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>157656</contig_pos>
        <strand>+</strand>
        <context>TTTCAAATTG[A/G]ACAGGGTATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTTTTTAAAGGACCAGAGTTTCATAGTAGAGCCAAATTTTTCAAATTG</left_flank>
        <right_flank>ACAGGGTATATTTGACATTGTTTACTAAAGCCTATATGAAATGAAAATGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCGATTTTTGAATTTTCTGAACAATAGCTTTACTCTGGTGCGTTTTCTTGGCGTTGGGTGTAATTTATGGTATCACAAATTTTTTTGATTAAAGTTTGGAATGAAATTTTCAGATTTGGTTTATGTCTGCCTGATTTTCACGAAATCATTGTTGAAGACATCAGTTTAGGAACTTTCTATGTGTTATAGATCCCATGGCCTCCGAGTACTTATTTGTACTCATTTTCATCGTTGCTGCGGATTTTACCCCCGTGGCAAACTAAACATGAAAAGTGTTCAGAAAGATTTCGTTTCAGGATACTGCACCACCTACAACTATTTTGATGCGAAATAAAGATATGTGTGGAAAACTGATCAACTAATGAAAGATGCGACATAAACTAATATGATTTTATCAAAATTCTATTTAAAAAAAAGTTGTTCTCAATAATAATTATGGATTGTAGAGATTTTTTAAAGGACCAGAGTTTCATAGTAGAGCCAAATTTTTCAAATTGGACAGGGTATATTTGACATTGTTTACTAAAGCCTATATGAAATGAAAATGAAAATTATTTAAAAATAAGCTTCTCCTGAATCTTTTCTTATTTTCAAGGTTCTTCAATCCATCATATCTCATCCTCCCGACGTCTAGAAAGCATTCAATATCAAATTAGCATTTATCTACAATATGATCATATTCTGGTGACGTCTTCATCGTTCCTATTCAGATAGTGATTAACATTAACATCCATAGAAGCTGAACCAAGCGGTTTCGTACTGCTTAATGTTATCAGACTACAGTAAATATACAAATAAAGAGAGAAAAGGGAGGAGAGGACTTGATTTGTCGTTGTGTATTGGTAGAAGCTAATTTTAAGAATTGGCTGTAAAATAATTGAGCTTATCGAACATTTGAAAAATGGGAAATTTGCGAAAATTTGTTTGAATATTTGTTTCTAACATCAAATTACAGATCAATTTATTTAAAAATTTATGCAAAACGTGCGAAAATGAGC</canonical>
            <polymorphic>AACCGATTTTTGAATTTTCTGAACAATAGCTTTACTCTGGTGCGTTTTCTTGGCGTTGGGTGTAATTTATGGTATCACAAATTTTTTTGATTAAAGTTTGGAATGAAATTTTCAGATTTGGTTTATGTCTGCCTGATTTTCACGAAATCATTGTTGAAGACATCAGTTTAGGAACTTTCTATGTGTTATAGATCCCATGGCCTCCGAGTACTTATTTGTACTCATTTTCATCGTTGCTGCGGATTTTACCCCCGTGGCAAACTAAACATGAAAAGTGTTCAGAAAGATTTCGTTTCAGGATACTGCACCACCTACAACTATTTTGATGCGAAATAAAGATATGTGTGGAAAACTGATCAACTAATGAAAGATGCGACATAAACTAATATGATTTTATCAAAATTCTATTTAAAAAAAAGTTGTTCTCAATAATAATTATGGATTGTAGAGATTTTTTAAAGGACCAGAGTTTCATAGTAGAGCCAAATTTTTCAAATTGRACAGGGTATATTTGACATTGTTTACTAAAGCCTATATGAAATGAAAATGAAAATTATTTAAAAATAAGCTTCTCCTGAATCTTTTCTTATTTTCAAGGTTCTTCAATCCATCATATCTCATCCTCCCGACGTCTAGAAAGCATTCAATATCAAATTAGCATTTATCTACAATATGATCATATTCTGGTGACGTCTTCATCGTTCCTATTCAGATAGTGATTAACATTAACATCCATAGAAGCTGAACCAAGCGGTTTCGTACTGCTTAATGTTATCAGACTACAGTAAATATACAAATAAAGAGAGAAAAGGGAGGAGAGGACTTGATTTGTCGTTGTGTATTGGTAGAAGCTAATTTTAAGAATTGGCTGTAAAATAATTGAGCTTATCGAACATTTGAAAAATGGGAAATTTGCGAAAATTTGTTTGAATATTTGTTTCTAACATCAAATTACAGATCAATTTATTTAAAAATTTATGCAAAACGTGCGAAAATGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTAATGAAAGATGCGACATAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGAACCTTGAAAATAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AACTAATGAAAGATGCGACATAAACTAATATGATTTTATCAAAATTCTATTTAAAAAAAAGTTGTTCTCAATAATAATTATGGATTGTAGAGATTTTTTAAAGGACCAGAGTTTCATAGTAGAGCCAAATTTTTCAAATTGGACAGGGTATATTTGACATTGTTTACTAAAGCCTATATGAAATGAAAATGAAAATTATTTAAAAATAAGCTTCTCCTGAATCTTTTCTTATTTTCAAGGTTCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>AACTAATGAAAGATGCGACATAAACTAATATGATTTTATCAAAATTCTATTTAAAAAAAAGTTGTTCTCAATAATAATTATGGATTGTAGAGATTTTTTAAAGGACCAGAGTTTCATAGTAGAGCCAAATTTTTCAAATTGRACAGGGTATATTTGACATTGTTTACTAAAGCCTATATGAAATGAAAATGAAAATTATTTAAAAATAAGCTTCTCCTGAATCTTTTCTTATTTTCAAGGTTCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17522</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>157767</contig_pos>
        <strand>+</strand>
        <context>CTTCAATCCA[C/T]CATATCTCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATAAGCTTCTCCTGAATCTTTTCTTATTTTCAAGGTTCTTCAATCCA</left_flank>
        <right_flank>CATATCTCATCCTCCCGACGTCTAGAAAGCATTCAATATCAAATTAGCAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGATTTGGTTTATGTCTGCCTGATTTTCACGAAATCATTGTTGAAGACATCAGTTTAGGAACTTTCTATGTGTTATAGATCCCATGGCCTCCGAGTACTTATTTGTACTCATTTTCATCGTTGCTGCGGATTTTACCCCCGTGGCAAACTAAACATGAAAAGTGTTCAGAAAGATTTCGTTTCAGGATACTGCACCACCTACAACTATTTTGATGCGAAATAAAGATATGTGTGGAAAACTGATCAACTAATGAAAGATGCGACATAAACTAATATGATTTTATCAAAATTCTATTTAAAAAAAAGTTGTTCTCAATAATAATTATGGATTGTAGAGATTTTTTAAAGGACCAGAGTTTCATAGTAGAGCCAAATTTTTCAAATTGGACAGGGTATATTTGACATTGTTTACTAAAGCCTATATGAAATGAAAATGAAAATTATTTAAAAATAAGCTTCTCCTGAATCTTTTCTTATTTTCAAGGTTCTTCAATCCATCATATCTCATCCTCCCGACGTCTAGAAAGCATTCAATATCAAATTAGCATTTATCTACAATATGATCATATTCTGGTGACGTCTTCATCGTTCCTATTCAGATAGTGATTAACATTAACATCCATAGAAGCTGAACCAAGCGGTTTCGTACTGCTTAATGTTATCAGACTACAGTAAATATACAAATAAAGAGAGAAAAGGGAGGAGAGGACTTGATTTGTCGTTGTGTATTGGTAGAAGCTAATTTTAAGAATTGGCTGTAAAATAATTGAGCTTATCGAACATTTGAAAAATGGGAAATTTGCGAAAATTTGTTTGAATATTTGTTTCTAACATCAAATTACAGATCAATTTATTTAAAAATTTATGCAAAACGTGCGAAAATGAGCTCATGAAAAATGCTTCGAATAGCAATGATCTATGAAAAATGGTGCTTATACAAAACTGCTTAAATCGTTCTAAAAAAGTGGTTCCAAACAGATACTGCCAGAAACAAGTCT</canonical>
            <polymorphic>TCAGATTTGGTTTATGTCTGCCTGATTTTCACGAAATCATTGTTGAAGACATCAGTTTAGGAACTTTCTATGTGTTATAGATCCCATGGCCTCCGAGTACTTATTTGTACTCATTTTCATCGTTGCTGCGGATTTTACCCCCGTGGCAAACTAAACATGAAAAGTGTTCAGAAAGATTTCGTTTCAGGATACTGCACCACCTACAACTATTTTGATGCGAAATAAAGATATGTGTGGAAAACTGATCAACTAATGAAAGATGCGACATAAACTAATATGATTTTATCAAAATTCTATTTAAAAAAAAGTTGTTCTCAATAATAATTATGGATTGTAGAGATTTTTTAAAGGACCAGAGTTTCATAGTAGAGCCAAATTTTTCAAATTGGACAGGGTATATTTGACATTGTTTACTAAAGCCTATATGAAATGAAAATGAAAATTATTTAAAAATAAGCTTCTCCTGAATCTTTTCTTATTTTCAAGGTTCTTCAATCCAYCATATCTCATCCTCCCGACGTCTAGAAAGCATTCAATATCAAATTAGCATTTATCTACAATATGATCATATTCTGGTGACGTCTTCATCGTTCCTATTCAGATAGTGATTAACATTAACATCCATAGAAGCTGAACCAAGCGGTTTCGTACTGCTTAATGTTATCAGACTACAGTAAATATACAAATAAAGAGAGAAAAGGGAGGAGAGGACTTGATTTGTCGTTGTGTATTGGTAGAAGCTAATTTTAAGAATTGGCTGTAAAATAATTGAGCTTATCGAACATTTGAAAAATGGGAAATTTGCGAAAATTTGTTTGAATATTTGTTTCTAACATCAAATTACAGATCAATTTATTTAAAAATTTATGCAAAACGTGCGAAAATGAGCTCATGAAAAATGCTTCGAATAGCAATGATCTATGAAAAATGGTGCTTATACAAAACTGCTTAAATCGTTCTAAAAAAGTGGTTCCAAACAGATACTGCCAGAAACAAGTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCTATATGAAATGAAAATGAAA</pcr_primer_p1>
		<pcr_primer_p2>TCTGATAACATTAAGCAGTACGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCCTATATGAAATGAAAATGAAAATTATTTAAAAATAAGCTTCTCCTGAATCTTTTCTTATTTTCAAGGTTCTTCAATCCATCATATCTCATCCTCCCGACGTCTAGAAAGCATTCAATATCAAATTAGCATTTATCTACAATATGATCATATTCTGGTGACGTCTTCATCGTTCCTATTCAGATAGTGATTAACATTAACATCCATAGAAGCTGAACCAAGCGGTTTCGTACTGCTTAATGTTATCAGA</canonical_amplicon>
		<polymorphic_amplicon>GCCTATATGAAATGAAAATGAAAATTATTTAAAAATAAGCTTCTCCTGAATCTTTTCTTATTTTCAAGGTTCTTCAATCCAYCATATCTCATCCTCCCGACGTCTAGAAAGCATTCAATATCAAATTAGCATTTATCTACAATATGATCATATTCTGGTGACGTCTTCATCGTTCCTATTCAGATAGTGATTAACATTAACATCCATAGAAGCTGAACCAAGCGGTTTCGTACTGCTTAATGTTATCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17523</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>157806</contig_pos>
        <strand>+</strand>
        <context>GCATTCAATA[A/T]CAAATTAGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTTCAATCCATCATATCTCATCCTCCCGACGTCTAGAAAGCATTCAATA</left_flank>
        <right_flank>CAAATTAGCATTTATCTACAATATGATCATATTCTGGTGACGTCTTCATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTGAAGACATCAGTTTAGGAACTTTCTATGTGTTATAGATCCCATGGCCTCCGAGTACTTATTTGTACTCATTTTCATCGTTGCTGCGGATTTTACCCCCGTGGCAAACTAAACATGAAAAGTGTTCAGAAAGATTTCGTTTCAGGATACTGCACCACCTACAACTATTTTGATGCGAAATAAAGATATGTGTGGAAAACTGATCAACTAATGAAAGATGCGACATAAACTAATATGATTTTATCAAAATTCTATTTAAAAAAAAGTTGTTCTCAATAATAATTATGGATTGTAGAGATTTTTTAAAGGACCAGAGTTTCATAGTAGAGCCAAATTTTTCAAATTGGACAGGGTATATTTGACATTGTTTACTAAAGCCTATATGAAATGAAAATGAAAATTATTTAAAAATAAGCTTCTCCTGAATCTTTTCTTATTTTCAAGGTTCTTCAATCCATCATATCTCATCCTCCCGACGTCTAGAAAGCATTCAATATCAAATTAGCATTTATCTACAATATGATCATATTCTGGTGACGTCTTCATCGTTCCTATTCAGATAGTGATTAACATTAACATCCATAGAAGCTGAACCAAGCGGTTTCGTACTGCTTAATGTTATCAGACTACAGTAAATATACAAATAAAGAGAGAAAAGGGAGGAGAGGACTTGATTTGTCGTTGTGTATTGGTAGAAGCTAATTTTAAGAATTGGCTGTAAAATAATTGAGCTTATCGAACATTTGAAAAATGGGAAATTTGCGAAAATTTGTTTGAATATTTGTTTCTAACATCAAATTACAGATCAATTTATTTAAAAATTTATGCAAAACGTGCGAAAATGAGCTCATGAAAAATGCTTCGAATAGCAATGATCTATGAAAAATGGTGCTTATACAAAACTGCTTAAATCGTTCTAAAAAAGTGGTTCCAAACAGATACTGCCAGAAACAAGTCTGCCTCGAATGTGGCAAAATTTATTTTGAAGATCATAAAA</canonical>
            <polymorphic>TTGTTGAAGACATCAGTTTAGGAACTTTCTATGTGTTATAGATCCCATGGCCTCCGAGTACTTATTTGTACTCATTTTCATCGTTGCTGCGGATTTTACCCCCGTGGCAAACTAAACATGAAAAGTGTTCAGAAAGATTTCGTTTCAGGATACTGCACCACCTACAACTATTTTGATGCGAAATAAAGATATGTGTGGAAAACTGATCAACTAATGAAAGATGCGACATAAACTAATATGATTTTATCAAAATTCTATTTAAAAAAAAGTTGTTCTCAATAATAATTATGGATTGTAGAGATTTTTTAAAGGACCAGAGTTTCATAGTAGAGCCAAATTTTTCAAATTGGACAGGGTATATTTGACATTGTTTACTAAAGCCTATATGAAATGAAAATGAAAATTATTTAAAAATAAGCTTCTCCTGAATCTTTTCTTATTTTCAAGGTTCTTCAATCCATCATATCTCATCCTCCCGACGTCTAGAAAGCATTCAATAWCAAATTAGCATTTATCTACAATATGATCATATTCTGGTGACGTCTTCATCGTTCCTATTCAGATAGTGATTAACATTAACATCCATAGAAGCTGAACCAAGCGGTTTCGTACTGCTTAATGTTATCAGACTACAGTAAATATACAAATAAAGAGAGAAAAGGGAGGAGAGGACTTGATTTGTCGTTGTGTATTGGTAGAAGCTAATTTTAAGAATTGGCTGTAAAATAATTGAGCTTATCGAACATTTGAAAAATGGGAAATTTGCGAAAATTTGTTTGAATATTTGTTTCTAACATCAAATTACAGATCAATTTATTTAAAAATTTATGCAAAACGTGCGAAAATGAGCTCATGAAAAATGCTTCGAATAGCAATGATCTATGAAAAATGGTGCTTATACAAAACTGCTTAAATCGTTCTAAAAAAGTGGTTCCAAACAGATACTGCCAGAAACAAGTCTGCCTCGAATGTGGCAAAATTTATTTTGAAGATCATAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTCTCCTGAATCTTTTCTTAT</pcr_primer_p1>
		<pcr_primer_p2>CTCCCTTTTCTCTCTTTATTTGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCTTCTCCTGAATCTTTTCTTATTTTCAAGGTTCTTCAATCCATCATATCTCATCCTCCCGACGTCTAGAAAGCATTCAATATCAAATTAGCATTTATCTACAATATGATCATATTCTGGTGACGTCTTCATCGTTCCTATTCAGATAGTGATTAACATTAACATCCATAGAAGCTGAACCAAGCGGTTTCGTACTGCTTAATGTTATCAGACTACAGTAAATATACAAATAAAGAGAGAAAAGGGAG</canonical_amplicon>
		<polymorphic_amplicon>GCTTCTCCTGAATCTTTTCTTATTTTCAAGGTTCTTCAATCCATCATATCTCATCCTCCCGACGTCTAGAAAGCATTCAATAWCAAATTAGCATTTATCTACAATATGATCATATTCTGGTGACGTCTTCATCGTTCCTATTCAGATAGTGATTAACATTAACATCCATAGAAGCTGAACCAAGCGGTTTCGTACTGCTTAATGTTATCAGACTACAGTAAATATACAAATAAAGAGAGAAAAGGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17524</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>161162</contig_pos>
        <strand>+</strand>
        <context>CTTCGCTGGC[A/C]AATTCTGGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAATGAAGATTCCTCTAGAAGAATAGTTCCTATACTAGGGCTTCGCTGGC</left_flank>
        <right_flank>AATTCTGGTCGGACCTAGTAGTATTCCAAAAAATTAATACTAGTAACATT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGGCTCCTCTTCATCGAACCACAATGGCGAAGCGGCAACAATCGAACACAACACTGAAAAAATATAGATCTAGAAGAAGACGAAGAAAATGATTCATGAATTTTGTATTCATCTATTTTTCATTCCGAGACCGGACCCGAAAACACTGAAAGAAAAATGCGAGTCGCGGGAAAAATCGCGAAGGGTGGTAATTTTTGAGAATCCGCACGCGAGGAGATTCGGAAAAAAATGACGTTGGTGTTCAGAGAGAAAGATAAATTCTGGGTACGAATTCTAGGACCCATGATTTAAATTAATGAAAAACGACATATTTCGTTTCGAATGAATTAACCATTTGAAAAACCACCAGAGAATCCTTCAGAAAACATAAAGATTTCGTTGAAACTTGAGAAAAAAGTTCGGCCGAGTACAGTTAGTCGGAAAATGTTAAAAAACAGAAAAAAAAATAGAATGAAGATTCCTCTAGAAGAATAGTTCCTATACTAGGGCTTCGCTGGCAAATTCTGGTCGGACCTAGTAGTATTCCAAAAAATTAATACTAGTAACATTTCAAATTTCAACTTCCGACCAAAATCTGACCATTAGCCGCTGTTCTTGGGCAAGTTCCTGCTAGAACCTGGCCGCACATTTTTAATCAAGTCCAATTTTGGTTTTTTGTTTGTGGTCACTTTTTCGTGATCTATCTGCTCAGGAATTGGTAATGGATCCACCGGACTGTGTATTGCAATTTTCAGTGTACGATTATCAGTATATAACGGCATTATGCCCCAGTAAAACATTAAAGTAACAACAGTCGGTTTCTAAAAAGAAAATGAAATGAGAGCTAAATCAACAATTGGACGTCTTCCTAGGATTCATGACTCTCAGAAACCGTTGATAATTAACAAAACGCCTTAAACGCTCCATAAAATTACAGTTTTTTTTGTAACTTTTGAAGTCATATCATAAATTTTTAATAATGTTTAGAAGTGTTATGTTGTTTTCCGGTTACTAGATTAC</canonical>
            <polymorphic>TCGGCTCCTCTTCATCGAACCACAATGGCGAAGCGGCAACAATCGAACACAACACTGAAAAAATATAGATCTAGAAGAAGACGAAGAAAATGATTCATGAATTTTGTATTCATCTATTTTTCATTCCGAGACCGGACCCGAAAACACTGAAAGAAAAATGCGAGTCGCGGGAAAAATCGCGAAGGGTGGTAATTTTTGAGAATCCGCACGCGAGGAGATTCGGAAAAAAATGACGTTGGTGTTCAGAGAGAAAGATAAATTCTGGGTACGAATTCTAGGACCCATGATTTAAATTAATGAAAAACGACATATTTCGTTTCGAATGAATTAACCATTTGAAAAACCACCAGAGAATCCTTCAGAAAACATAAAGATTTCGTTGAAACTTGAGAAAAAAGTTCGGCCGAGTACAGTTAGTCGGAAAATGTTAAAAAACAGAAAAAAAAATAGAATGAAGATTCCTCTAGAAGAATAGTTCCTATACTAGGGCTTCGCTGGCMAATTCTGGTCGGACCTAGTAGTATTCCAAAAAATTAATACTAGTAACATTTCAAATTTCAACTTCCGACCAAAATCTGACCATTAGCCGCTGTTCTTGGGCAAGTTCCTGCTAGAACCTGGCCGCACATTTTTAATCAAGTCCAATTTTGGTTTTTTGTTTGTGGTCACTTTTTCGTGATCTATCTGCTCAGGAATTGGTAATGGATCCACCGGACTGTGTATTGCAATTTTCAGTGTACGATTATCAGTATATAACGGCATTATGCCCCAGTAAAACATTAAAGTAACAACAGTCGGTTTCTAAAAAGAAAATGAAATGAGAGCTAAATCAACAATTGGACGTCTTCCTAGGATTCATGACTCTCAGAAACCGTTGATAATTAACAAAACGCCTTAAACGCTCCATAAAATTACAGTTTTTTTTGTAACTTTTGAAGTCATATCATAAATTTTTAATAATGTTTAGAAGTGTTATGTTGTTTTCCGGTTACTAGATTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>395 230 158 99 53 52 13</canonical_bands>
                <polymorphic_bands>395 283 158 99 52 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAGTACAGTTAGTCGGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAACCAAAATTGGACTTGATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGAGTACAGTTAGTCGGAAAATGTTAAAAAACAGAAAAAAAAATAGAATGAAGATTCCTCTAGAAGAATAGTTCCTATACTAGGGCTTCGCTGGCAAATTCTGGTCGGACCTAGTAGTATTCCAAAAAATTAATACTAGTAACATTTCAAATTTCAACTTCCGACCAAAATCTGACCATTAGCCGCTGTTCTTGGGCAAGTTCCTGCTAGAACCTGGCCGCACATTTTTAATCAAGTCCAATTTTGGTTT</canonical_amplicon>
		<polymorphic_amplicon>CGAGTACAGTTAGTCGGAAAATGTTAAAAAACAGAAAAAAAAATAGAATGAAGATTCCTCTAGAAGAATAGTTCCTATACTAGGGCTTCGCTGGCMAATTCTGGTCGGACCTAGTAGTATTCCAAAAAATTAATACTAGTAACATTTCAAATTTCAACTTCCGACCAAAATCTGACCATTAGCCGCTGTTCTTGGGCAAGTTCCTGCTAGAACCTGGCCGCACATTTTTAATCAAGTCCAATTTTGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17525</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>161655</contig_pos>
        <strand>+</strand>
        <context>TTCCGGTTAC[A/T]AGATTACTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCATAAATTTTTAATAATGTTTAGAAGTGTTATGTTGTTTTCCGGTTAC</left_flank>
        <right_flank>AGATTACTTACCGAAGAACAGAAAAACCGTTGAATAGTTCATGATTTCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTGGCAAATTCTGGTCGGACCTAGTAGTATTCCAAAAAATTAATACTAGTAACATTTCAAATTTCAACTTCCGACCAAAATCTGACCATTAGCCGCTGTTCTTGGGCAAGTTCCTGCTAGAACCTGGCCGCACATTTTTAATCAAGTCCAATTTTGGTTTTTTGTTTGTGGTCACTTTTTCGTGATCTATCTGCTCAGGAATTGGTAATGGATCCACCGGACTGTGTATTGCAATTTTCAGTGTACGATTATCAGTATATAACGGCATTATGCCCCAGTAAAACATTAAAGTAACAACAGTCGGTTTCTAAAAAGAAAATGAAATGAGAGCTAAATCAACAATTGGACGTCTTCCTAGGATTCATGACTCTCAGAAACCGTTGATAATTAACAAAACGCCTTAAACGCTCCATAAAATTACAGTTTTTTTTGTAACTTTTGAAGTCATATCATAAATTTTTAATAATGTTTAGAAGTGTTATGTTGTTTTCCGGTTACTAGATTACTTACCGAAGAACAGAAAAACCGTTGAATAGTTCATGATTTCTGCTGAGGGTGTCACACAAGAAGCTTTCACACAACCACTGGAATAGTAGTCGGGTGGGGCTGCTTGAAAGTGAGAATGGATGAATCTCTTTTCGGAGCTGCCGAAAGATATATCTCTGCATTCAAGCCACGCCCACCTATCACATTTCCATTGGACCGCCCGTTTTCGAAAAGCTCCCGAAATGGTGACGAAATAATTAGGGGAAGTGGAGGCGTCGATGGGAAAAGTATCGGTTACTTGAAGAATGATTGAAGATAGAAAATAGGATGAGCTACTTTCGGCACGTCATTGCAAGAAGGGGACGTCATGAACAATTGCAAAGCAAACTTGAAAAGTGTTTGGATGGTACGGGGAAGGGTGTTAAGAAATGAACGATTTGCGTAATCCTAAAACTTTCGTAAGTTTGTTTTCAGTCTGCTCATGCTGGTCTAAAGAACTGTGTGCACTGTGAA</canonical>
            <polymorphic>GCTGGCAAATTCTGGTCGGACCTAGTAGTATTCCAAAAAATTAATACTAGTAACATTTCAAATTTCAACTTCCGACCAAAATCTGACCATTAGCCGCTGTTCTTGGGCAAGTTCCTGCTAGAACCTGGCCGCACATTTTTAATCAAGTCCAATTTTGGTTTTTTGTTTGTGGTCACTTTTTCGTGATCTATCTGCTCAGGAATTGGTAATGGATCCACCGGACTGTGTATTGCAATTTTCAGTGTACGATTATCAGTATATAACGGCATTATGCCCCAGTAAAACATTAAAGTAACAACAGTCGGTTTCTAAAAAGAAAATGAAATGAGAGCTAAATCAACAATTGGACGTCTTCCTAGGATTCATGACTCTCAGAAACCGTTGATAATTAACAAAACGCCTTAAACGCTCCATAAAATTACAGTTTTTTTTGTAACTTTTGAAGTCATATCATAAATTTTTAATAATGTTTAGAAGTGTTATGTTGTTTTCCGGTTACWAGATTACTTACCGAAGAACAGAAAAACCGTTGAATAGTTCATGATTTCTGCTGAGGGTGTCACACAAGAAGCTTTCACACAACCACTGGAATAGTAGTCGGGTGGGGCTGCTTGAAAGTGAGAATGGATGAATCTCTTTTCGGAGCTGCCGAAAGATATATCTCTGCATTCAAGCCACGCCCACCTATCACATTTCCATTGGACCGCCCGTTTTCGAAAAGCTCCCGAAATGGTGACGAAATAATTAGGGGAAGTGGAGGCGTCGATGGGAAAAGTATCGGTTACTTGAAGAATGATTGAAGATAGAAAATAGGATGAGCTACTTTCGGCACGTCATTGCAAGAAGGGGACGTCATGAACAATTGCAAAGCAAACTTGAAAAGTGTTTGGATGGTACGGGGAAGGGTGTTAAGAAATGAACGATTTGCGTAATCCTAAAACTTTCGTAAGTTTGTTTTCAGTCTGCTCATGCTGGTCTAAAGAACTGTGTGCACTGTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 238 143 71 25 22</canonical_bands>
                <polymorphic_bands>644 238 71 25 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAAAGAAAATGAAATGAGAGC</pcr_primer_p1>
		<pcr_primer_p2>CTCAGCAGAAATCATGAACTATT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TAAAAAGAAAATGAAATGAGAGCTAAATCAACAATTGGACGTCTTCCTAGGATTCATGACTCTCAGAAACCGTTGATAATTAACAAAACGCCTTAAACGCTCCATAAAATTACAGTTTTTTTTGTAACTTTTGAAGTCATATCATAAATTTTTAATAATGTTTAGAAGTGTTATGTTGTTTTCCGGTTACTAGATTACTTACCGAAGAACAGAAAAACCGTTGAATAGTTCATGATTTCTGCTGAG</canonical_amplicon>
		<polymorphic_amplicon>TAAAAAGAAAATGAAATGAGAGCTAAATCAACAATTGGACGTCTTCCTAGGATTCATGACTCTCAGAAACCGTTGATAATTAACAAAACGCCTTAAACGCTCCATAAAATTACAGTTTTTTTTGTAACTTTTGAAGTCATATCATAAATTTTTAATAATGTTTAGAAGTGTTATGTTGTTTTCCGGTTACWAGATTACTTACCGAAGAACAGAAAAACCGTTGAATAGTTCATGATTTCTGCTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17526</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>161601</contig_pos>
        <strand></strand>
        <context>ACTTTTGAAG[T/C]CATATCATAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AACGCCTTAAACGCTCCATAAAATTACAGTTTTTTTTGTAACTTTTGAAG</left_flank>
        <right_flank>CATATCATAAATTTTTAATAATGTTTAGAAGTGTTATGTTGTTTTCCGGT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAAATAGAATGAAGATTCCTCTAGAAGAATAGTTCCTATACTAGGGCTTCGCTGGCAAATTCTGGTCGGACCTAGTAGTATTCCAAAAAATTAATACTAGTAACATTTCAAATTTCAACTTCCGACCAAAATCTGACCATTAGCCGCTGTTCTTGGGCAAGTTCCTGCTAGAACCTGGCCGCACATTTTTAATCAAGTCCAATTTTGGTTTTTTGTTTGTGGTCACTTTTTCGTGATCTATCTGCTCAGGAATTGGTAATGGATCCACCGGACTGTGTATTGCAATTTTCAGTGTACGATTATCAGTATATAACGGCATTATGCCCCAGTAAAACATTAAAGTAACAACAGTCGGTTTCTAAAAAGAAAATGAAATGAGAGCTAAATCAACAATTGGACGTCTTCCTAGGATTCATGACTCTCAGAAACCGTTGATAATTAACAAAACGCCTTAAACGCTCCATAAAATTACAGTTTTTTTTGTAACTTTTGAAGTCATATCATAAATTTTTAATAATGTTTAGAAGTGTTATGTTGTTTTCCGGTTACTAGATTACTTACCGAAGAACAGAAAAACCGTTGAATAGTTCATGATTTCTGCTGAGGGTGTCACACAAGAAGCTTTCACACAACCACTGGAATAGTAGTCGGGTGGGGCTGCTTGAAAGTGAGAATGGATGAATCTCTTTTCGGAGCTGCCGAAAGATATATCTCTGCATTCAAGCCACGCCCACCTATCACATTTCCATTGGACCGCCCGTTTTCGAAAAGCTCCCGAAATGGTGACGAAATAATTAGGGGAAGTGGAGGCGTCGATGGGAAAAGTATCGGTTACTTGAAGAATGATTGAAGATAGAAAATAGGATGAGCTACTTTCGGCACGTCATTGCAAGAAGGGGACGTCATGAACAATTGCAAAGCAAACTTGAAAAGTGTTTGGATGGTACGGGGAAGGGTGTTAAGAAATGAACGATTTGCGTAATCCTAAAACTTTCG</canonical>
            <polymorphic>AAAAAAAATAGAATGAAGATTCCTCTAGAAGAATAGTTCCTATACTAGGGCTTCGCTGGCAAATTCTGGTCGGACCTAGTAGTATTCCAAAAAATTAATACTAGTAACATTTCAAATTTCAACTTCCGACCAAAATCTGACCATTAGCCGCTGTTCTTGGGCAAGTTCCTGCTAGAACCTGGCCGCACATTTTTAATCAAGTCCAATTTTGGTTTTTTGTTTGTGGTCACTTTTTCGTGATCTATCTGCTCAGGAATTGGTAATGGATCCACCGGACTGTGTATTGCAATTTTCAGTGTACGATTATCAGTATATAACGGCATTATGCCCCAGTAAAACATTAAAGTAACAACAGTCGGTTTCTAAAAAGAAAATGAAATGAGAGCTAAATCAACAATTGGACGTCTTCCTAGGATTCATGACTCTCAGAAACCGTTGATAATTAACAAAACGCCTTAAACGCTCCATAAAATTACAGTTTTTTTTGTAACTTTTGAAGYCATATCATAAATTTTTAATAATGTTTAGAAGTGTTATGTTGTTTTCCGGTTACTAGATTACTTACCGAAGAACAGAAAAACCGTTGAATAGTTCATGATTTCTGCTGAGGGTGTCACACAAGAAGCTTTCACACAACCACTGGAATAGTAGTCGGGTGGGGCTGCTTGAAAGTGAGAATGGATGAATCTCTTTTCGGAGCTGCCGAAAGATATATCTCTGCATTCAAGCCACGCCCACCTATCACATTTCCATTGGACCGCCCGTTTTCGAAAAGCTCCCGAAATGGTGACGAAATAATTAGGGGAAGTGGAGGCGTCGATGGGAAAAGTATCGGTTACTTGAAGAATGATTGAAGATAGAAAATAGGATGAGCTACTTTCGGCACGTCATTGCAAGAAGGGGACGTCATGAACAATTGCAAAGCAAACTTGAAAAGTGTTTGGATGGTACGGGGAAGGGTGTTAAGAAATGAACGATTTGCGTAATCCTAAAACTTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAAAGAAAATGAAATGAGAGC</pcr_primer_p1>
		<pcr_primer_p2>CTCAGCAGAAATCATGAACTATT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TAAAAAGAAAATGAAATGAGAGCTAAATCAACAATTGGACGTCTTCCTAGGATTCATGACTCTCAGAAACCGTTGATAATTAACAAAACGCCTTAAACGCTCCATAAAATTACAGTTTTTTTTGTAACTTTTGAAGTCATATCATAAATTTTTAATAATGTTTAGAAGTGTTATGTTGTTTTCCGGTTACTAGATTACTTACCGAAGAACAGAAAAACCGTTGAATAGTTCATGATTTCTGCTGAG</canonical_amplicon>
		<polymorphic_amplicon>TAAAAAGAAAATGAAATGAGAGCTAAATCAACAATTGGACGTCTTCCTAGGATTCATGACTCTCAGAAACCGTTGATAATTAACAAAACGCCTTAAACGCTCCATAAAATTACAGTTTTTTTTGTAACTTTTGAAGYCATATCATAAATTTTTAATAATGTTTAGAAGTGTTATGTTGTTTTCCGGTTACTAGATTACTTACCGAAGAACAGAAAAACCGTTGAATAGTTCATGATTTCTGCTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17527</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>161464</contig_pos>
        <strand></strand>
        <context>CAGTCGGTTT[C/T]TAAAAAGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATAACGGCATTATGCCCCAGTAAAACATTAAAGTAACAACAGTCGGTTT</left_flank>
        <right_flank>TAAAAAGAAAATGAAATGAGAGCTAAATCAACAATTGGACGTCTTCCTAG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGACATATTTCGTTTCGAATGAATTAACCATTTGAAAAACCACCAGAGAATCCTTCAGAAAACATAAAGATTTCGTTGAAACTTGAGAAAAAAGTTCGGCCGAGTACAGTTAGTCGGAAAATGTTAAAAAACAGAAAAAAAAATAGAATGAAGATTCCTCTAGAAGAATAGTTCCTATACTAGGGCTTCGCTGGCAAATTCTGGTCGGACCTAGTAGTATTCCAAAAAATTAATACTAGTAACATTTCAAATTTCAACTTCCGACCAAAATCTGACCATTAGCCGCTGTTCTTGGGCAAGTTCCTGCTAGAACCTGGCCGCACATTTTTAATCAAGTCCAATTTTGGTTTTTTGTTTGTGGTCACTTTTTCGTGATCTATCTGCTCAGGAATTGGTAATGGATCCACCGGACTGTGTATTGCAATTTTCAGTGTACGATTATCAGTATATAACGGCATTATGCCCCAGTAAAACATTAAAGTAACAACAGTCGGTTTCTAAAAAGAAAATGAAATGAGAGCTAAATCAACAATTGGACGTCTTCCTAGGATTCATGACTCTCAGAAACCGTTGATAATTAACAAAACGCCTTAAACGCTCCATAAAATTACAGTTTTTTTTGTAACTTTTGAAGTCATATCATAAATTTTTAATAATGTTTAGAAGTGTTATGTTGTTTTCCGGTTACTAGATTACTTACCGAAGAACAGAAAAACCGTTGAATAGTTCATGATTTCTGCTGAGGGTGTCACACAAGAAGCTTTCACACAACCACTGGAATAGTAGTCGGGTGGGGCTGCTTGAAAGTGAGAATGGATGAATCTCTTTTCGGAGCTGCCGAAAGATATATCTCTGCATTCAAGCCACGCCCACCTATCACATTTCCATTGGACCGCCCGTTTTCGAAAAGCTCCCGAAATGGTGACGAAATAATTAGGGGAAGTGGAGGCGTCGATGGGAAAAGTATCGGTTACTTGAAGAATGATTGAAGATAGAAA</canonical>
            <polymorphic>AACGACATATTTCGTTTCGAATGAATTAACCATTTGAAAAACCACCAGAGAATCCTTCAGAAAACATAAAGATTTCGTTGAAACTTGAGAAAAAAGTTCGGCCGAGTACAGTTAGTCGGAAAATGTTAAAAAACAGAAAAAAAAATAGAATGAAGATTCCTCTAGAAGAATAGTTCCTATACTAGGGCTTCGCTGGCAAATTCTGGTCGGACCTAGTAGTATTCCAAAAAATTAATACTAGTAACATTTCAAATTTCAACTTCCGACCAAAATCTGACCATTAGCCGCTGTTCTTGGGCAAGTTCCTGCTAGAACCTGGCCGCACATTTTTAATCAAGTCCAATTTTGGTTTTTTGTTTGTGGTCACTTTTTCGTGATCTATCTGCTCAGGAATTGGTAATGGATCCACCGGACTGTGTATTGCAATTTTCAGTGTACGATTATCAGTATATAACGGCATTATGCCCCAGTAAAACATTAAAGTAACAACAGTCGGTTTYTAAAAAGAAAATGAAATGAGAGCTAAATCAACAATTGGACGTCTTCCTAGGATTCATGACTCTCAGAAACCGTTGATAATTAACAAAACGCCTTAAACGCTCCATAAAATTACAGTTTTTTTTGTAACTTTTGAAGTCATATCATAAATTTTTAATAATGTTTAGAAGTGTTATGTTGTTTTCCGGTTACTAGATTACTTACCGAAGAACAGAAAAACCGTTGAATAGTTCATGATTTCTGCTGAGGGTGTCACACAAGAAGCTTTCACACAACCACTGGAATAGTAGTCGGGTGGGGCTGCTTGAAAGTGAGAATGGATGAATCTCTTTTCGGAGCTGCCGAAAGATATATCTCTGCATTCAAGCCACGCCCACCTATCACATTTCCATTGGACCGCCCGTTTTCGAAAAGCTCCCGAAATGGTGACGAAATAATTAGGGGAAGTGGAGGCGTCGATGGGAAAAGTATCGGTTACTTGAAGAATGATTGAAGATAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCACTTTTTCGTGATCTATCTG</pcr_primer_p1>
		<pcr_primer_p2>TAATTTTATGGAGCGTTTAAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCACTTTTTCGTGATCTATCTGCTCAGGAATTGGTAATGGATCCACCGGACTGTGTATTGCAATTTTCAGTGTACGATTATCAGTATATAACGGCATTATGCCCCAGTAAAACATTAAAGTAACAACAGTCGGTTTCTAAAAAGAAAATGAAATGAGAGCTAAATCAACAATTGGACGTCTTCCTAGGATTCATGACTCTCAGAAACCGTTGATAATTAACAAAACGCCTTAAACGCTCCATAAAATTA</canonical_amplicon>
		<polymorphic_amplicon>GTCACTTTTTCGTGATCTATCTGCTCAGGAATTGGTAATGGATCCACCGGACTGTGTATTGCAATTTTCAGTGTACGATTATCAGTATATAACGGCATTATGCCCCAGTAAAACATTAAAGTAACAACAGTCGGTTTYTAAAAAGAAAATGAAATGAGAGCTAAATCAACAATTGGACGTCTTCCTAGGATTCATGACTCTCAGAAACCGTTGATAATTAACAAAACGCCTTAAACGCTCCATAAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17551</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>199958</contig_pos>
        <strand>+</strand>
        <context>TTTGTCGCTT[C/T]TCAGGAATAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCTCTTCAAACTTGATAATTGGAATTTTCAGAAACTCCCTTTGTCGCTT</left_flank>
        <right_flank>TCAGGAATATCCAACCAGTTTTGCATTCTCCTTATTACATTCTTCTCATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTGCAGTCTTGTATAGTTCCTAATTGGAGGAACTGATGCTGGCAGTCGAATCGAAACAAGGAGAGAAGACTAAGCTTTACTTCCAGCACGACAATGCGGGACTGGTATCCTGGAATCCAGAAACTCACTGGTATCCAGGAATGATCTCATCGGATTATTACCCTCTTTTCTATTGATAGATGATTATACTCCTTCCGAATTCCCCTATCAAAACACAAAATTCTCGCCAGAATTTTTAAAAACTATTCCAAAGCTTTAAATAAAAAAGGAATTTCAAAAAATGTTTCCCTTGGAGTGTTCAAACTACTGTTTCCTGATTTCAAATGTCAAGCTATGCCTTCGAAATTCCATTACAACAATTTCATTGAAATTGGAAATATTATTAGAGTTAGGAAATGAATCAATTAGTAGGTATAATCATAATTGGAAATTATTTGGATTTTGAATCCTCTCTTCAAACTTGATAATTGGAATTTTCAGAAACTCCCTTTGTCGCTTCTCAGGAATATCCAACCAGTTTTGCATTCTCCTTATTACATTCTTCTCATATCCCCAAACCGATTGCTCATTGTTATAAAGCATCCAGAATAGATTTTTCGTGATATTCAAAATATTGACTGCGATCCATTCCAATTTCAATTGATCATTTTCATCATTTGGATTGTGACATCTCAGATAATAATCAAAGTTCCATTCCAATTGGTATTGATCAAATGGGAAAAGAATTTCCTGGTCTAGTCGGTCCGTGGCTTCTTCCATTGTCAATTTCTGGAAATTTTCTATGAAAAGTTTCAGAAAATGGTTGATGATTTACCTTCTGCATATCACGTGGTTTTTTGAATCCCGACTTATATTTGAATGCATAATGATCCAGATAATTTAGATAATTAGGATCGAAGAGGGCTTGTACAGATGGCACTCGATAATTAAGAAACTTGTGATTCGTTCTTTTTACTTTTGGCACTTTCTGAGTTCTAATCTGAAATTATATGTCACCTC</canonical>
            <polymorphic>ACTGCAGTCTTGTATAGTTCCTAATTGGAGGAACTGATGCTGGCAGTCGAATCGAAACAAGGAGAGAAGACTAAGCTTTACTTCCAGCACGACAATGCGGGACTGGTATCCTGGAATCCAGAAACTCACTGGTATCCAGGAATGATCTCATCGGATTATTACCCTCTTTTCTATTGATAGATGATTATACTCCTTCCGAATTCCCCTATCAAAACACAAAATTCTCGCCAGAATTTTTAAAAACTATTCCAAAGCTTTAAATAAAAAAGGAATTTCAAAAAATGTTTCCCTTGGAGTGTTCAAACTACTGTTTCCTGATTTCAAATGTCAAGCTATGCCTTCGAAATTCCATTACAACAATTTCATTGAAATTGGAAATATTATTAGAGTTAGGAAATGAATCAATTAGTAGGTATAATCATAATTGGAAATTATTTGGATTTTGAATCCTCTCTTCAAACTTGATAATTGGAATTTTCAGAAACTCCCTTTGTCGCTTYTCAGGAATATCCAACCAGTTTTGCATTCTCCTTATTACATTCTTCTCATATCCCCAAACCGATTGCTCATTGTTATAAAGCATCCAGAATAGATTTTTCGTGATATTCAAAATATTGACTGCGATCCATTCCAATTTCAATTGATCATTTTCATCATTTGGATTGTGACATCTCAGATAATAATCAAAGTTCCATTCCAATTGGTATTGATCAAATGGGAAAAGAATTTCCTGGTCTAGTCGGTCCGTGGCTTCTTCCATTGTCAATTTCTGGAAATTTTCTATGAAAAGTTTCAGAAAATGGTTGATGATTTACCTTCTGCATATCACGTGGTTTTTTGAATCCCGACTTATATTTGAATGCATAATGATCCAGATAATTTAGATAATTAGGATCGAAGAGGGCTTGTACAGATGGCACTCGATAATTAAGAAACTTGTGATTCGTTCTTTTTACTTTTGGCACTTTCTGAGTTCTAATCTGAAATTATATGTCACCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>429 297 172 71 31</canonical_bands>
                <polymorphic_bands>601 297 71 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATTCCATTACAACAATTTCA</pcr_primer_p1>
		<pcr_primer_p2>ATTCTGGATGCTTTATAACAATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAATTCCATTACAACAATTTCATTGAAATTGGAAATATTATTAGAGTTAGGAAATGAATCAATTAGTAGGTATAATCATAATTGGAAATTATTTGGATTTTGAATCCTCTCTTCAAACTTGATAATTGGAATTTTCAGAAACTCCCTTTGTCGCTTCTCAGGAATATCCAACCAGTTTTGCATTCTCCTTATTACATTCTTCTCATATCCCCAAACCGATTGCTCATTGTTATAAAGCATCCAGAAT</canonical_amplicon>
		<polymorphic_amplicon>GAAATTCCATTACAACAATTTCATTGAAATTGGAAATATTATTAGAGTTAGGAAATGAATCAATTAGTAGGTATAATCATAATTGGAAATTATTTGGATTTTGAATCCTCTCTTCAAACTTGATAATTGGAATTTTCAGAAACTCCCTTTGTCGCTTYTCAGGAATATCCAACCAGTTTTGCATTCTCCTTATTACATTCTTCTCATATCCCCAAACCGATTGCTCATTGTTATAAAGCATCCAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17552</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>200340</contig_pos>
        <strand>+</strand>
        <context>CCAGATAATT[C/T]AGATAATTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTTTTTTGAATCCCGACTTATATTTGAATGCATAATGATCCAGATAATT</left_flank>
        <right_flank>AGATAATTAGGATCGAAGAGGGCTTGTACAGATGGCACTCGATAATTAAG</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAGAGTTAGGAAATGAATCAATTAGTAGGTATAATCATAATTGGAAATTATTTGGATTTTGAATCCTCTCTTCAAACTTGATAATTGGAATTTTCAGAAACTCCCTTTGTCGCTTCTCAGGAATATCCAACCAGTTTTGCATTCTCCTTATTACATTCTTCTCATATCCCCAAACCGATTGCTCATTGTTATAAAGCATCCAGAATAGATTTTTCGTGATATTCAAAATATTGACTGCGATCCATTCCAATTTCAATTGATCATTTTCATCATTTGGATTGTGACATCTCAGATAATAATCAAAGTTCCATTCCAATTGGTATTGATCAAATGGGAAAAGAATTTCCTGGTCTAGTCGGTCCGTGGCTTCTTCCATTGTCAATTTCTGGAAATTTTCTATGAAAAGTTTCAGAAAATGGTTGATGATTTACCTTCTGCATATCACGTGGTTTTTTGAATCCCGACTTATATTTGAATGCATAATGATCCAGATAATTTAGATAATTAGGATCGAAGAGGGCTTGTACAGATGGCACTCGATAATTAAGAAACTTGTGATTCGTTCTTTTTACTTTTGGCACTTTCTGAGTTCTAATCTGAAATTATATGTCACCTCAAAAAAAGTTTTTTTAGCTATTTACTCACCACTGTCTTATTCTGATCTTCTTCTGAATGCTTATTTTTCGGTGGCCCTTCAAACCAAAAATTATAGTATGCAGCTGGCTTTTTGGAGACGGTGTTCACTTTTTTTGAGGATTTGCGTCGTGGTTTGCTTTGTAAGACTTCGGAAGAGCGCCAGGTTACTTGTGGGTTTGGAAGATTTTCCATGATTTTGCTGGAAAAATACATATAATAGAAAACGGGAGCAAAAGCGAACGTAGCATAAACTTCTGAAAACAATGAAGCGAGAAAAAGAGAACTGGAGACAGAAAAAAAAGATGACAAGTAAAAACAGAAACATTCAATTTGTGCCGCGCGACAGGTAGATCAAAAGGGTC</canonical>
            <polymorphic>ATTAGAGTTAGGAAATGAATCAATTAGTAGGTATAATCATAATTGGAAATTATTTGGATTTTGAATCCTCTCTTCAAACTTGATAATTGGAATTTTCAGAAACTCCCTTTGTCGCTTCTCAGGAATATCCAACCAGTTTTGCATTCTCCTTATTACATTCTTCTCATATCCCCAAACCGATTGCTCATTGTTATAAAGCATCCAGAATAGATTTTTCGTGATATTCAAAATATTGACTGCGATCCATTCCAATTTCAATTGATCATTTTCATCATTTGGATTGTGACATCTCAGATAATAATCAAAGTTCCATTCCAATTGGTATTGATCAAATGGGAAAAGAATTTCCTGGTCTAGTCGGTCCGTGGCTTCTTCCATTGTCAATTTCTGGAAATTTTCTATGAAAAGTTTCAGAAAATGGTTGATGATTTACCTTCTGCATATCACGTGGTTTTTTGAATCCCGACTTATATTTGAATGCATAATGATCCAGATAATTYAGATAATTAGGATCGAAGAGGGCTTGTACAGATGGCACTCGATAATTAAGAAACTTGTGATTCGTTCTTTTTACTTTTGGCACTTTCTGAGTTCTAATCTGAAATTATATGTCACCTCAAAAAAAGTTTTTTTAGCTATTTACTCACCACTGTCTTATTCTGATCTTCTTCTGAATGCTTATTTTTCGGTGGCCCTTCAAACCAAAAATTATAGTATGCAGCTGGCTTTTTGGAGACGGTGTTCACTTTTTTTGAGGATTTGCGTCGTGGTTTGCTTTGTAAGACTTCGGAAGAGCGCCAGGTTACTTGTGGGTTTGGAAGATTTTCCATGATTTTGCTGGAAAAATACATATAATAGAAAACGGGAGCAAAAGCGAACGTAGCATAAACTTCTGAAAACAATGAAGCGAGAAAAAGAGAACTGGAGACAGAAAAAAAAGATGACAAGTAAAAACAGAAACATTCAATTTGTGCCGCGCGACAGGTAGATCAAAAGGGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATTTACCTTCTGCATATCAC</pcr_primer_p1>
		<pcr_primer_p2>TCAGAAGAAGATCAGAATAAGACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGATTTACCTTCTGCATATCACGTGGTTTTTTGAATCCCGACTTATATTTGAATGCATAATGATCCAGATAATTTAGATAATTAGGATCGAAGAGGGCTTGTACAGATGGCACTCGATAATTAAGAAACTTGTGATTCGTTCTTTTTACTTTTGGCACTTTCTGAGTTCTAATCTGAAATTATATGTCACCTCAAAAAAAGTTTTTTTAGCTATTTACTCACCACTGTCTTATTCTGATCTTCTTCTGA</canonical_amplicon>
		<polymorphic_amplicon>ATGATTTACCTTCTGCATATCACGTGGTTTTTTGAATCCCGACTTATATTTGAATGCATAATGATCCAGATAATTYAGATAATTAGGATCGAAGAGGGCTTGTACAGATGGCACTCGATAATTAAGAAACTTGTGATTCGTTCTTTTTACTTTTGGCACTTTCTGAGTTCTAATCTGAAATTATATGTCACCTCAAAAAAAGTTTTTTTAGCTATTTACTCACCACTGTCTTATTCTGATCTTCTTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17553</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>202886</contig_pos>
        <strand></strand>
        <context>AGTATGACTC[C/T]YAATGATTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATCGCTGTGGAACCGGATACAGTTGAAAATTATGATTCAGTATGACTC</left_flank>
        <right_flank>TAATGATTATGAAATTTAATGAAGATCCATTAAAAATCTCTAATTTTTTA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATTCTCAACAACAAAAAATATTTTCAAAAAAAATCTGCCAATTTTCAGATTGGTTTTTTTACACTAAAATCTGTCCTGATTGTTAGTTCTTTTTTATATGTTCCAATCGTGATCAGTATCAAAAAATTGTCCAATTTAAGAGTGGTACAAGAAACTCAACCCCAAAAGTACATAATTTGGCAAGCAATGATTACAATGATGGTAAAATCGGTGAGTTACATCGTATGTTGATATTGAGTTTTATATTAATTTCAGATATCACTTCCCGTTGCAACAGTTTATCTGTATTACGATAACCAGTACGAAATCGATATAACCCTCGTGATTCTATTTCTAATCATCACTGATATCATTCTGCTCCCACTCATCATCCAAATATCGTATTTAAGCTGCAACAAAAGAAATGTAGAGGCATTGGTTCAAATTTTATTTTGCTGCAACTTGTGTAAATCGCTGTGGAACCGGATACAGTTGAAAATTATGATTCAGTATGACTCCTAATGATTATGAAATTTAATGAAGATCCATTAAAAATCTCTAATTTTTTATCTCGTTTGCCGTGAAACCTGTAATAGAAGGGCTTCTTAACTTCTAATTTTGAGCCAGTTTTTGTCAGGTGACACATTTTTGATACCTTGCATGGAAATTGAAATAATTGAGCTAGAAATCAGAAGAGTGGTATTAACTTTTCAGATACCGTGTTTGTTTTTTAATGAAGTTTAACATCTTTAAACTGTTTCAAACGGATGAAGAATTTTTTATTTTGTAAAAAAACATTAGATTGCTGACCTCATTTCAACATTGAACATTTTGAAATTTCTGATTCCAGTGATCTCAAGTGAATTGAACTGTGAAAAAATTGAAAAACACATAACTTCTCTGATGACACATCTTTTCAATATTTGGACTTGCTCGACCAAAAAGTTTTTGCTTTTCGATTTCCATTAAAAAGTTCTAAAAAAATTGTTATTTTATCTCATAAAAGAAGCCTTTTCCAA</canonical>
            <polymorphic>AGATTCTCAACAACAAAAAATATTTTCAAAAAAAATCTGCCAATTTTCAGATTGGTTTTTTTACACTAAAATCTGTCCTGATTGTTAGTTCTTTTTTATATGTTCCAATCGTGATCAGTATCAAAAAATTGTCCAATTTAAGAGTGGTACAAGAAACTCAACCCCAAAAGTACATAATTTGGCAAGCAATGATTACAATGATGGTAAAATCGGTGAGTTACATCGTATGTTGATATTGAGTTTTATATTAATTTCAGATATCACTTCCCGTTGCAACAGTTTATCTGTATTACGATAACCAGTACGAAATCGATATAACCCTCGTGATTCTATTTCTAATCATCACTGATATCATTCTGCTCCCACTCATCATCCAAATATCGTATTTAAGCTGCAACAAAAGAAATGTAGAGGCATTGGTTCAAATTTTATTTTGCTGCAACTTGTGTAAATCGCTGTGGAACCGGATACAGTTGAAAATTATGATTCAGTATGACTCYTAATGATTATGAAATTTAATGAAGATCCATTAAAAATCTCTAATTTTTTATCTCGTTTGCCGTGAAACCTGTAATAGAAGGGCTTCTTAACTTCTAATTTTGAGCCAGTTTTTGTCAGGTGACACATTTTTGATACCTTGCATGGAAATTGAAATAATTGAGCTAGAAATCAGAAGAGTGGTATTAACTTTTCAGATACCGTGTTTGTTTTTTAATGAAGTTTAACATCTTTAAACTGTTTCAAACGGATGAAGAATTTTTTATTTTGTAAAAAAACATTAGATTGCTGACCTCATTTCAACATTGAACATTTTGAAATTTCTGATTCCAGTGATCTCAAGTGAATTGAACTGTGAAAAAATTGAAAAACACATAACTTCTCTGATGACACATCTTTTCAATATTTGGACTTGCTCGACCAAAAAGTTTTTGCTTTTCGATTTCCATTAAAAAGTTCTAAAAAAATTGTTATTTTATCTCATAAAAGAAGCCTTTTCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTGCTGCAACTTGTGTAA</pcr_primer_p1>
		<pcr_primer_p2>CACTCTTCTGATTTCTAGCTCAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATTTTGCTGCAACTTGTGTAAATCGCTGTGGAACCGGATACAGTTGAAAATTATGATTCAGTATGACTCCTAATGATTATGAAATTTAATGAAGATCCATTAAAAATCTCTAATTTTTTATCTCGTTTGCCGTGAAACCTGTAATAGAAGGGCTTCTTAACTTCTAATTTTGAGCCAGTTTTTGTCAGGTGACACATTTTTGATACCTTGCATGGAAATTGAAATAATTGAGCTAGAAATCAGAAGAGTG</canonical_amplicon>
		<polymorphic_amplicon>TATTTTGCTGCAACTTGTGTAAATCGCTGTGGAACCGGATACAGTTGAAAATTATGATTCAGTATGACTCYTAATGATTATGAAATTTAATGAAGATCCATTAAAAATCTCTAATTTTTTATCTCGTTTGCCGTGAAACCTGTAATAGAAGGGCTTCTTAACTTCTAATTTTGAGCCAGTTTTTGTCAGGTGACACATTTTTGATACCTTGCATGGAAATTGAAATAATTGAGCTAGAAATCAGAAGAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17554</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>203266</contig_pos>
        <strand>+</strand>
        <context>CACATAACTT[C/T]TCTGATGACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTGATCTCAAGTGAATTGAACTGTGAAAAAATTGAAAAACACATAACTT</left_flank>
        <right_flank>TCTGATGACACATCTTTTCAATATTTGGACTTGCTCGACCAAAAAGTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTATTTAAGCTGCAACAAAAGAAATGTAGAGGCATTGGTTCAAATTTTATTTTGCTGCAACTTGTGTAAATCGCTGTGGAACCGGATACAGTTGAAAATTATGATTCAGTATGACTCCTAATGATTATGAAATTTAATGAAGATCCATTAAAAATCTCTAATTTTTTATCTCGTTTGCCGTGAAACCTGTAATAGAAGGGCTTCTTAACTTCTAATTTTGAGCCAGTTTTTGTCAGGTGACACATTTTTGATACCTTGCATGGAAATTGAAATAATTGAGCTAGAAATCAGAAGAGTGGTATTAACTTTTCAGATACCGTGTTTGTTTTTTAATGAAGTTTAACATCTTTAAACTGTTTCAAACGGATGAAGAATTTTTTATTTTGTAAAAAAACATTAGATTGCTGACCTCATTTCAACATTGAACATTTTGAAATTTCTGATTCCAGTGATCTCAAGTGAATTGAACTGTGAAAAAATTGAAAAACACATAACTTCTCTGATGACACATCTTTTCAATATTTGGACTTGCTCGACCAAAAAGTTTTTGCTTTTCGATTTCCATTAAAAAGTTCTAAAAAAATTGTTATTTTATCTCATAAAAGAAGCCTTTTCCAATTATTGAGATTTTGAAATCCATTTTCTATTCTTGAAAAAAAAGAAGATTTTAGAGTTTTCCCATGAACTGATATGTTTTGAAAAACTGAAAAGTTTTCAGTGATGCCTCACGGTTTTCAGTAGGCGGTGTCTTACATACATTTCTAAGAAATATCAGAAAAAGTATGCTCTGGTTTCAAATTTCAGCATCACAATTTTTTTCGAGATTTACTTTTTCAGGTATTTCAGAACTTGGATGCTGTTCAAAATATTCTTGGGGCAGTCATTTTTCGAGTAAGTTTCAGATGTATCCTAAATATAGGGTGTGTAAGTTTCAGCCCAGTTTTGTATAATTGTACTGGAACAGATATCCATGTGGTCACTCATGTATTAATTGGTGT</canonical>
            <polymorphic>TCGTATTTAAGCTGCAACAAAAGAAATGTAGAGGCATTGGTTCAAATTTTATTTTGCTGCAACTTGTGTAAATCGCTGTGGAACCGGATACAGTTGAAAATTATGATTCAGTATGACTCCTAATGATTATGAAATTTAATGAAGATCCATTAAAAATCTCTAATTTTTTATCTCGTTTGCCGTGAAACCTGTAATAGAAGGGCTTCTTAACTTCTAATTTTGAGCCAGTTTTTGTCAGGTGACACATTTTTGATACCTTGCATGGAAATTGAAATAATTGAGCTAGAAATCAGAAGAGTGGTATTAACTTTTCAGATACCGTGTTTGTTTTTTAATGAAGTTTAACATCTTTAAACTGTTTCAAACGGATGAAGAATTTTTTATTTTGTAAAAAAACATTAGATTGCTGACCTCATTTCAACATTGAACATTTTGAAATTTCTGATTCCAGTGATCTCAAGTGAATTGAACTGTGAAAAAATTGAAAAACACATAACTTYTCTGATGACACATCTTTTCAATATTTGGACTTGCTCGACCAAAAAGTTTTTGCTTTTCGATTTCCATTAAAAAGTTCTAAAAAAATTGTTATTTTATCTCATAAAAGAAGCCTTTTCCAATTATTGAGATTTTGAAATCCATTTTCTATTCTTGAAAAAAAAGAAGATTTTAGAGTTTTCCCATGAACTGATATGTTTTGAAAAACTGAAAAGTTTTCAGTGATGCCTCACGGTTTTCAGTAGGCGGTGTCTTACATACATTTCTAAGAAATATCAGAAAAAGTATGCTCTGGTTTCAAATTTCAGCATCACAATTTTTTTCGAGATTTACTTTTTCAGGTATTTCAGAACTTGGATGCTGTTCAAAATATTCTTGGGGCAGTCATTTTTCGAGTAAGTTTCAGATGTATCCTAAATATAGGGTGTGTAAGTTTCAGCCCAGTTTTGTATAATTGTACTGGAACAGATATCCATGTGGTCACTCATGTATTAATTGGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAATTTCTGATTCCAGTGAT</pcr_primer_p1>
		<pcr_primer_p2>TGGGAAAACTCTAAAATCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAAATTTCTGATTCCAGTGATCTCAAGTGAATTGAACTGTGAAAAAATTGAAAAACACATAACTTCTCTGATGACACATCTTTTCAATATTTGGACTTGCTCGACCAAAAAGTTTTTGCTTTTCGATTTCCATTAAAAAGTTCTAAAAAAATTGTTATTTTATCTCATAAAAGAAGCCTTTTCCAATTATTGAGATTTTGAAATCCATTTTCTATTCTTGAAAAAAAAGAAGATTTTAGAGTTTTCCCA</canonical_amplicon>
		<polymorphic_amplicon>TGAAATTTCTGATTCCAGTGATCTCAAGTGAATTGAACTGTGAAAAAATTGAAAAACACATAACTTYTCTGATGACACATCTTTTCAATATTTGGACTTGCTCGACCAAAAAGTTTTTGCTTTTCGATTTCCATTAAAAAGTTCTAAAAAAATTGTTATTTTATCTCATAAAAGAAGCCTTTTCCAATTATTGAGATTTTGAAATCCATTTTCTATTCTTGAAAAAAAAGAAGATTTTAGAGTTTTCCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17555</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>203140</contig_pos>
        <strand>+</strand>
        <context>AACGGATGAA[A/G]AATTTTTTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGTTTTTTAATGAAGTTTAACATCTTTAAACTGTTTCAAACGGATGAA</left_flank>
        <right_flank>AATTTTTTATTTTGTAAAAAAACATTAGATTGCTGACCTCATTTCAACAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGATATCACTTCCCGTTGCAACAGTTTATCTGTATTACGATAACCAGTACGAAATCGATATAACCCTCGTGATTCTATTTCTAATCATCACTGATATCATTCTGCTCCCACTCATCATCCAAATATCGTATTTAAGCTGCAACAAAAGAAATGTAGAGGCATTGGTTCAAATTTTATTTTGCTGCAACTTGTGTAAATCGCTGTGGAACCGGATACAGTTGAAAATTATGATTCAGTATGACTCCTAATGATTATGAAATTTAATGAAGATCCATTAAAAATCTCTAATTTTTTATCTCGTTTGCCGTGAAACCTGTAATAGAAGGGCTTCTTAACTTCTAATTTTGAGCCAGTTTTTGTCAGGTGACACATTTTTGATACCTTGCATGGAAATTGAAATAATTGAGCTAGAAATCAGAAGAGTGGTATTAACTTTTCAGATACCGTGTTTGTTTTTTAATGAAGTTTAACATCTTTAAACTGTTTCAAACGGATGAAGAATTTTTTATTTTGTAAAAAAACATTAGATTGCTGACCTCATTTCAACATTGAACATTTTGAAATTTCTGATTCCAGTGATCTCAAGTGAATTGAACTGTGAAAAAATTGAAAAACACATAACTTCTCTGATGACACATCTTTTCAATATTTGGACTTGCTCGACCAAAAAGTTTTTGCTTTTCGATTTCCATTAAAAAGTTCTAAAAAAATTGTTATTTTATCTCATAAAAGAAGCCTTTTCCAATTATTGAGATTTTGAAATCCATTTTCTATTCTTGAAAAAAAAGAAGATTTTAGAGTTTTCCCATGAACTGATATGTTTTGAAAAACTGAAAAGTTTTCAGTGATGCCTCACGGTTTTCAGTAGGCGGTGTCTTACATACATTTCTAAGAAATATCAGAAAAAGTATGCTCTGGTTTCAAATTTCAGCATCACAATTTTTTTCGAGATTTACTTTTTCAGGTATTTCAGAACTTGGATGCTGTTCAAAATATTCT</canonical>
            <polymorphic>CAGATATCACTTCCCGTTGCAACAGTTTATCTGTATTACGATAACCAGTACGAAATCGATATAACCCTCGTGATTCTATTTCTAATCATCACTGATATCATTCTGCTCCCACTCATCATCCAAATATCGTATTTAAGCTGCAACAAAAGAAATGTAGAGGCATTGGTTCAAATTTTATTTTGCTGCAACTTGTGTAAATCGCTGTGGAACCGGATACAGTTGAAAATTATGATTCAGTATGACTCCTAATGATTATGAAATTTAATGAAGATCCATTAAAAATCTCTAATTTTTTATCTCGTTTGCCGTGAAACCTGTAATAGAAGGGCTTCTTAACTTCTAATTTTGAGCCAGTTTTTGTCAGGTGACACATTTTTGATACCTTGCATGGAAATTGAAATAATTGAGCTAGAAATCAGAAGAGTGGTATTAACTTTTCAGATACCGTGTTTGTTTTTTAATGAAGTTTAACATCTTTAAACTGTTTCAAACGGATGAARAATTTTTTATTTTGTAAAAAAACATTAGATTGCTGACCTCATTTCAACATTGAACATTTTGAAATTTCTGATTCCAGTGATCTCAAGTGAATTGAACTGTGAAAAAATTGAAAAACACATAACTTCTCTGATGACACATCTTTTCAATATTTGGACTTGCTCGACCAAAAAGTTTTTGCTTTTCGATTTCCATTAAAAAGTTCTAAAAAAATTGTTATTTTATCTCATAAAAGAAGCCTTTTCCAATTATTGAGATTTTGAAATCCATTTTCTATTCTTGAAAAAAAAGAAGATTTTAGAGTTTTCCCATGAACTGATATGTTTTGAAAAACTGAAAAGTTTTCAGTGATGCCTCACGGTTTTCAGTAGGCGGTGTCTTACATACATTTCTAAGAAATATCAGAAAAAGTATGCTCTGGTTTCAAATTTCAGCATCACAATTTTTTTCGAGATTTACTTTTTCAGGTATTTCAGAACTTGGATGCTGTTCAAAATATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>362 242 170 88 76 62</canonical_bands>
                <polymorphic_bands>362 304 170 88 76</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGCTAGAAATCAGAAGAGTGGT</pcr_primer_p1>
		<pcr_primer_p2>TCCAAATATTGAAAAGATGTGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGCTAGAAATCAGAAGAGTGGTATTAACTTTTCAGATACCGTGTTTGTTTTTTAATGAAGTTTAACATCTTTAAACTGTTTCAAACGGATGAAGAATTTTTTATTTTGTAAAAAAACATTAGATTGCTGACCTCATTTCAACATTGAACATTTTGAAATTTCTGATTCCAGTGATCTCAAGTGAATTGAACTGTGAAAAAATTGAAAAACACATAACTTCTCTGATGACACATCTTTTCAATATTTGGA</canonical_amplicon>
		<polymorphic_amplicon>GAGCTAGAAATCAGAAGAGTGGTATTAACTTTTCAGATACCGTGTTTGTTTTTTAATGAAGTTTAACATCTTTAAACTGTTTCAAACGGATGAARAATTTTTTATTTTGTAAAAAAACATTAGATTGCTGACCTCATTTCAACATTGAACATTTTGAAATTTCTGATTCCAGTGATCTCAAGTGAATTGAACTGTGAAAAAATTGAAAAACACATAACTTCTCTGATGACACATCTTTTCAATATTTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17556</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>203041</contig_pos>
        <strand>+</strand>
        <context>GAAATTGAAA[A/T]AATTGAGCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCAGTTTTTGTCAGGTGACACATTTTTGATACCTTGCATGGAAATTGAAA</left_flank>
        <right_flank>AATTGAGCTAGAAATCAGAAGAGTGGTATTAACTTTTCAGATACCGTGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCAACCCCAAAAGTACATAATTTGGCAAGCAATGATTACAATGATGGTAAAATCGGTGAGTTACATCGTATGTTGATATTGAGTTTTATATTAATTTCAGATATCACTTCCCGTTGCAACAGTTTATCTGTATTACGATAACCAGTACGAAATCGATATAACCCTCGTGATTCTATTTCTAATCATCACTGATATCATTCTGCTCCCACTCATCATCCAAATATCGTATTTAAGCTGCAACAAAAGAAATGTAGAGGCATTGGTTCAAATTTTATTTTGCTGCAACTTGTGTAAATCGCTGTGGAACCGGATACAGTTGAAAATTATGATTCAGTATGACTCCTAATGATTATGAAATTTAATGAAGATCCATTAAAAATCTCTAATTTTTTATCTCGTTTGCCGTGAAACCTGTAATAGAAGGGCTTCTTAACTTCTAATTTTGAGCCAGTTTTTGTCAGGTGACACATTTTTGATACCTTGCATGGAAATTGAAATAATTGAGCTAGAAATCAGAAGAGTGGTATTAACTTTTCAGATACCGTGTTTGTTTTTTAATGAAGTTTAACATCTTTAAACTGTTTCAAACGGATGAAGAATTTTTTATTTTGTAAAAAAACATTAGATTGCTGACCTCATTTCAACATTGAACATTTTGAAATTTCTGATTCCAGTGATCTCAAGTGAATTGAACTGTGAAAAAATTGAAAAACACATAACTTCTCTGATGACACATCTTTTCAATATTTGGACTTGCTCGACCAAAAAGTTTTTGCTTTTCGATTTCCATTAAAAAGTTCTAAAAAAATTGTTATTTTATCTCATAAAAGAAGCCTTTTCCAATTATTGAGATTTTGAAATCCATTTTCTATTCTTGAAAAAAAAGAAGATTTTAGAGTTTTCCCATGAACTGATATGTTTTGAAAAACTGAAAAGTTTTCAGTGATGCCTCACGGTTTTCAGTAGGCGGTGTCTTACATACATTTCTAAGAAATATC</canonical>
            <polymorphic>ACTCAACCCCAAAAGTACATAATTTGGCAAGCAATGATTACAATGATGGTAAAATCGGTGAGTTACATCGTATGTTGATATTGAGTTTTATATTAATTTCAGATATCACTTCCCGTTGCAACAGTTTATCTGTATTACGATAACCAGTACGAAATCGATATAACCCTCGTGATTCTATTTCTAATCATCACTGATATCATTCTGCTCCCACTCATCATCCAAATATCGTATTTAAGCTGCAACAAAAGAAATGTAGAGGCATTGGTTCAAATTTTATTTTGCTGCAACTTGTGTAAATCGCTGTGGAACCGGATACAGTTGAAAATTATGATTCAGTATGACTCCTAATGATTATGAAATTTAATGAAGATCCATTAAAAATCTCTAATTTTTTATCTCGTTTGCCGTGAAACCTGTAATAGAAGGGCTTCTTAACTTCTAATTTTGAGCCAGTTTTTGTCAGGTGACACATTTTTGATACCTTGCATGGAAATTGAAAWAATTGAGCTAGAAATCAGAAGAGTGGTATTAACTTTTCAGATACCGTGTTTGTTTTTTAATGAAGTTTAACATCTTTAAACTGTTTCAAACGGATGAAGAATTTTTTATTTTGTAAAAAAACATTAGATTGCTGACCTCATTTCAACATTGAACATTTTGAAATTTCTGATTCCAGTGATCTCAAGTGAATTGAACTGTGAAAAAATTGAAAAACACATAACTTCTCTGATGACACATCTTTTCAATATTTGGACTTGCTCGACCAAAAAGTTTTTGCTTTTCGATTTCCATTAAAAAGTTCTAAAAAAATTGTTATTTTATCTCATAAAAGAAGCCTTTTCCAATTATTGAGATTTTGAAATCCATTTTCTATTCTTGAAAAAAAAGAAGATTTTAGAGTTTTCCCATGAACTGATATGTTTTGAAAAACTGAAAAGTTTTCAGTGATGCCTCACGGTTTTCAGTAGGCGGTGTCTTACATACATTTCTAAGAAATATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCGGATACAGTTGAAAATTA</pcr_primer_p1>
		<pcr_primer_p2>ACAAACACGGTATCTGAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AACCGGATACAGTTGAAAATTATGATTCAGTATGACTCCTAATGATTATGAAATTTAATGAAGATCCATTAAAAATCTCTAATTTTTTATCTCGTTTGCCGTGAAACCTGTAATAGAAGGGCTTCTTAACTTCTAATTTTGAGCCAGTTTTTGTCAGGTGACACATTTTTGATACCTTGCATGGAAATTGAAATAATTGAGCTAGAAATCAGAAGAGTGGTATTAACTTTTCAGATACCGTGTTTGT</canonical_amplicon>
		<polymorphic_amplicon>AACCGGATACAGTTGAAAATTATGATTCAGTATGACTCCTAATGATTATGAAATTTAATGAAGATCCATTAAAAATCTCTAATTTTTTATCTCGTTTGCCGTGAAACCTGTAATAGAAGGGCTTCTTAACTTCTAATTTTGAGCCAGTTTTTGTCAGGTGACACATTTTTGATACCTTGCATGGAAATTGAAAWAATTGAGCTAGAAATCAGAAGAGTGGTATTAACTTTTCAGATACCGTGTTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17557</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>206588</contig_pos>
        <strand></strand>
        <context>gaacggttac[C/T]gtgagcttct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGATATCTTTCACGGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTAC</left_flank>
        <right_flank>GTGAGCTTCTATTGGAGGAAAACCGTACTTTATTTTCTTGCATTTCCGAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACCACACTGACAGAAATCTATTGAAAGTTAGGGGTAATCGGGTAGAAGTGATTGAAATAAGTGCTGATAAGAAAACTCAATTTCAGCAATCAGAATGAGAGAAGAGCTATTTGTCAGTTGTGTTAATCTGAAGTCACATTTTGATTATTGGAAATGTATGACTTTTTTATGTTCTTTTCTATTAATTTATTAAACAACGAATGCATGTTTTTTCTTGTTCCACGGACAAGCCAACGAACCCATTCATATCTAGTGGATGCTTATTTGCCGACTCTGCCTTGTCAATTGTAAGAAAAAAGTTCAAGTTATCGTGTTCCTTCCTAAAAGTCCACTCAAAGCGTTAATTGTGAACTCATATATCTCATTTCTTGTGAGAGATATCACAAAGCGGTCAATTAACAAAATATTTATCATCATTTCAAAAATATTTTGTCAGTTAATCACTTTTCGATATCTTTCACGGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACCGTGAGCTTCTATTGGAGGAAAACCGTACTTTATTTTCTTGCATTTCCGAGAGGCAAACGTTTTCCTCTGTCTCTGAAAAAGTCCATAAAGGCGATTACCAGCAGAATTTTTTTCTAATATCCATAACTCAATTTTGCTATTATTTTGAAAAAACAACATTATGTTTACTGCATTTGCAGAATCAGCATTCTACAATACTGACTCATCAAAAAACCTATCGGTTTGATGTTTGCGCTTCTTAATATACGTTTATTTACATTGTACCTCTCTCCGTACCGACTCTCTATCATTCGTTGAGTTTTCGAATTGGAACTCACTTCATTTCGAAAAAGTTTTTTCATGTGGCCATTTTCTCTTTTTTCAGCTTCTTCGATGTCACAGAAGAAGGAAACAAATATCAGCGTTGATCCCTTCACGGGTCAGGATGTCTTGAAAACGAAGGCGTTCTCATGGAGAGGTCAGTGACAGAAAATAACATGTGTCTCTTAAAAATAAACTGA</canonical>
            <polymorphic>CACCACACTGACAGAAATCTATTGAAAGTTAGGGGTAATCGGGTAGAAGTGATTGAAATAAGTGCTGATAAGAAAACTCAATTTCAGCAATCAGAATGAGAGAAGAGCTATTTGTCAGTTGTGTTAATCTGAAGTCACATTTTGATTATTGGAAATGTATGACTTTTTTATGTTCTTTTCTATTAATTTATTAAACAACGAATGCATGTTTTTTCTTGTTCCACGGACAAGCCAACGAACCCATTCATATCTAGTGGATGCTTATTTGCCGACTCTGCCTTGTCAATTGTAAGAAAAAAGTTCAAGTTATCGTGTTCCTTCCTAAAAGTCCACTCAAAGCGTTAATTGTGAACTCATATATCTCATTTCTTGTGAGAGATATCACAAAGCGGTCAATTAACAAAATATTTATCATCATTTCAAAAATATTTTGTCAGTTAATCACTTTTCGATATCTTTCACGGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACYGTGAGCTTCTATTGGAGGAAAACCGTACTTTATTTTCTTGCATTTCCGAGAGGCAAACGTTTTCCTCTGTCTCTGAAAAAGTCCATAAAGGCGATTACCAGCAGAATTTTTTTCTAATATCCATAACTCAATTTTGCTATTATTTTGAAAAAACAACATTATGTTTACTGCATTTGCAGAATCAGCATTCTACAATACTGACTCATCAAAAAACCTATCGGTTTGATGTTTGCGCTTCTTAATATACGTTTATTTACATTGTACCTCTCTCCGTACCGACTCTCTATCATTCGTTGAGTTTTCGAATTGGAACTCACTTCATTTCGAAAAAGTTTTTTCATGTGGCCATTTTCTCTTTTTTCAGCTTCTTCGATGTCACAGAAGAAGGAAACAAATATCAGCGTTGATCCCTTCACGGGTCAGGATGTCTTGAAAACGAAGGCGTTCTCATGGAGAGGTCAGTGACAGAAAATAACATGTGTCTCTTAAAAATAAACTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGTNACC</site>
                <isoschizomers>
                    <enzyme>BstEII</enzyme>
                    <enzyme>BstPI</enzyme>
                    <enzyme>Eco91I</enzyme>
                    <enzyme>EcoO65I</enzyme>
                    <enzyme>PspEI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCCTAAAAGTCCACTCAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCAGAGACAGAGGAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>CTTCCTAAAAGTCCACTCAAAGCGTTAATTGTGAACTCATATATCTCATTTCTTGTGAGAGATATCACAAAGCGGTCAATTAACAAAATATTTATCATCATTTCAAAAATATTTTGTCAGTTAATCACTTTTCGATATCTTTCACGGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACCGTGAGCTTCTATTGGAGGAAAACCGTACTTTATTTTCTTGCATTTCCGAGAGGCAAACGTTTTCCTCTGTCTCTGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CTTCCTAAAAGTCCACTCAAAGCGTTAATTGTGAACTCATATATCTCATTTCTTGTGAGAGATATCACAAAGCGGTCAATTAACAAAATATTTATCATCATTTCAAAAATATTTTGTCAGTTAATCACTTTTCGATATCTTTCACGGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACYGTGAGCTTCTATTGGAGGAAAACCGTACTTTATTTTCTTGCATTTCCGAGAGGCAAACGTTTTCCTCTGTCTCTGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17558</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>206612</contig_pos>
        <strand>+</strand>
        <context>ggaggAAAAC[A/C]GTACTTTATT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAGTTGAGCTCAAAGTGAACGGTTACCGTGAGCTTCTATTGGAGGAAAAC</left_flank>
        <right_flank>GTACTTTATTTTCTTGCATTTCCGAGAGGCAAACGTTTTCCTCTGTCTCT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTTAGGGGTAATCGGGTAGAAGTGATTGAAATAAGTGCTGATAAGAAAACTCAATTTCAGCAATCAGAATGAGAGAAGAGCTATTTGTCAGTTGTGTTAATCTGAAGTCACATTTTGATTATTGGAAATGTATGACTTTTTTATGTTCTTTTCTATTAATTTATTAAACAACGAATGCATGTTTTTTCTTGTTCCACGGACAAGCCAACGAACCCATTCATATCTAGTGGATGCTTATTTGCCGACTCTGCCTTGTCAATTGTAAGAAAAAAGTTCAAGTTATCGTGTTCCTTCCTAAAAGTCCACTCAAAGCGTTAATTGTGAACTCATATATCTCATTTCTTGTGAGAGATATCACAAAGCGGTCAATTAACAAAATATTTATCATCATTTCAAAAATATTTTGTCAGTTAATCACTTTTCGATATCTTTCACGGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACCGTGAGCTTCTATTGGAGGAAAACCGTACTTTATTTTCTTGCATTTCCGAGAGGCAAACGTTTTCCTCTGTCTCTGAAAAAGTCCATAAAGGCGATTACCAGCAGAATTTTTTTCTAATATCCATAACTCAATTTTGCTATTATTTTGAAAAAACAACATTATGTTTACTGCATTTGCAGAATCAGCATTCTACAATACTGACTCATCAAAAAACCTATCGGTTTGATGTTTGCGCTTCTTAATATACGTTTATTTACATTGTACCTCTCTCCGTACCGACTCTCTATCATTCGTTGAGTTTTCGAATTGGAACTCACTTCATTTCGAAAAAGTTTTTTCATGTGGCCATTTTCTCTTTTTTCAGCTTCTTCGATGTCACAGAAGAAGGAAACAAATATCAGCGTTGATCCCTTCACGGGTCAGGATGTCTTGAAAACGAAGGCGTTCTCATGGAGAGGTCAGTGACAGAAAATAACATGTGTCTCTTAAAAATAAACTGAAAATTCCAGAAATCCATCTTCAAA</canonical>
            <polymorphic>AAAGTTAGGGGTAATCGGGTAGAAGTGATTGAAATAAGTGCTGATAAGAAAACTCAATTTCAGCAATCAGAATGAGAGAAGAGCTATTTGTCAGTTGTGTTAATCTGAAGTCACATTTTGATTATTGGAAATGTATGACTTTTTTATGTTCTTTTCTATTAATTTATTAAACAACGAATGCATGTTTTTTCTTGTTCCACGGACAAGCCAACGAACCCATTCATATCTAGTGGATGCTTATTTGCCGACTCTGCCTTGTCAATTGTAAGAAAAAAGTTCAAGTTATCGTGTTCCTTCCTAAAAGTCCACTCAAAGCGTTAATTGTGAACTCATATATCTCATTTCTTGTGAGAGATATCACAAAGCGGTCAATTAACAAAATATTTATCATCATTTCAAAAATATTTTGTCAGTTAATCACTTTTCGATATCTTTCACGGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACCGTGAGCTTCTATTGGAGGAAAACMGTACTTTATTTTCTTGCATTTCCGAGAGGCAAACGTTTTCCTCTGTCTCTGAAAAAGTCCATAAAGGCGATTACCAGCAGAATTTTTTTCTAATATCCATAACTCAATTTTGCTATTATTTTGAAAAAACAACATTATGTTTACTGCATTTGCAGAATCAGCATTCTACAATACTGACTCATCAAAAAACCTATCGGTTTGATGTTTGCGCTTCTTAATATACGTTTATTTACATTGTACCTCTCTCCGTACCGACTCTCTATCATTCGTTGAGTTTTCGAATTGGAACTCACTTCATTTCGAAAAAGTTTTTTCATGTGGCCATTTTCTCTTTTTTCAGCTTCTTCGATGTCACAGAAGAAGGAAACAAATATCAGCGTTGATCCCTTCACGGGTCAGGATGTCTTGAAAACGAAGGCGTTCTCATGGAGAGGTCAGTGACAGAAAATAACATGTGTCTCTTAAAAATAAACTGAAAATTCCAGAAATCCATCTTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCCTAAAAGTCCACTCAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCAGAGACAGAGGAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>CTTCCTAAAAGTCCACTCAAAGCGTTAATTGTGAACTCATATATCTCATTTCTTGTGAGAGATATCACAAAGCGGTCAATTAACAAAATATTTATCATCATTTCAAAAATATTTTGTCAGTTAATCACTTTTCGATATCTTTCACGGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACCGTGAGCTTCTATTGGAGGAAAACCGTACTTTATTTTCTTGCATTTCCGAGAGGCAAACGTTTTCCTCTGTCTCTGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CTTCCTAAAAGTCCACTCAAAGCGTTAATTGTGAACTCATATATCTCATTTCTTGTGAGAGATATCACAAAGCGGTCAATTAACAAAATATTTATCATCATTTCAAAAATATTTTGTCAGTTAATCACTTTTCGATATCTTTCACGGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACCGTGAGCTTCTATTGGAGGAAAACMGTACTTTATTTTCTTGCATTTCCGAGAGGCAAACGTTTTCCTCTGTCTCTGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17559</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>206638</contig_pos>
        <strand>+</strand>
        <context>GCATTTCCGA[A/G]AGGCAAACGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTGAGCTTCTATTGGAGGAAAACCGTACTTTATTTTCTTGCATTTCCGA</left_flank>
        <right_flank>AGGCAAACGTTTTCCTCTGTCTCTGAAAAAGTCCATAAAGGCGATTACCA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTGAAATAAGTGCTGATAAGAAAACTCAATTTCAGCAATCAGAATGAGAGAAGAGCTATTTGTCAGTTGTGTTAATCTGAAGTCACATTTTGATTATTGGAAATGTATGACTTTTTTATGTTCTTTTCTATTAATTTATTAAACAACGAATGCATGTTTTTTCTTGTTCCACGGACAAGCCAACGAACCCATTCATATCTAGTGGATGCTTATTTGCCGACTCTGCCTTGTCAATTGTAAGAAAAAAGTTCAAGTTATCGTGTTCCTTCCTAAAAGTCCACTCAAAGCGTTAATTGTGAACTCATATATCTCATTTCTTGTGAGAGATATCACAAAGCGGTCAATTAACAAAATATTTATCATCATTTCAAAAATATTTTGTCAGTTAATCACTTTTCGATATCTTTCACGGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACCGTGAGCTTCTATTGGAGGAAAACCGTACTTTATTTTCTTGCATTTCCGAGAGGCAAACGTTTTCCTCTGTCTCTGAAAAAGTCCATAAAGGCGATTACCAGCAGAATTTTTTTCTAATATCCATAACTCAATTTTGCTATTATTTTGAAAAAACAACATTATGTTTACTGCATTTGCAGAATCAGCATTCTACAATACTGACTCATCAAAAAACCTATCGGTTTGATGTTTGCGCTTCTTAATATACGTTTATTTACATTGTACCTCTCTCCGTACCGACTCTCTATCATTCGTTGAGTTTTCGAATTGGAACTCACTTCATTTCGAAAAAGTTTTTTCATGTGGCCATTTTCTCTTTTTTCAGCTTCTTCGATGTCACAGAAGAAGGAAACAAATATCAGCGTTGATCCCTTCACGGGTCAGGATGTCTTGAAAACGAAGGCGTTCTCATGGAGAGGTCAGTGACAGAAAATAACATGTGTCTCTTAAAAATAAACTGAAAATTCCAGAAATCCATCTTCAAATTTTTTTCCTGACTATTCCTCTTCCA</canonical>
            <polymorphic>GATTGAAATAAGTGCTGATAAGAAAACTCAATTTCAGCAATCAGAATGAGAGAAGAGCTATTTGTCAGTTGTGTTAATCTGAAGTCACATTTTGATTATTGGAAATGTATGACTTTTTTATGTTCTTTTCTATTAATTTATTAAACAACGAATGCATGTTTTTTCTTGTTCCACGGACAAGCCAACGAACCCATTCATATCTAGTGGATGCTTATTTGCCGACTCTGCCTTGTCAATTGTAAGAAAAAAGTTCAAGTTATCGTGTTCCTTCCTAAAAGTCCACTCAAAGCGTTAATTGTGAACTCATATATCTCATTTCTTGTGAGAGATATCACAAAGCGGTCAATTAACAAAATATTTATCATCATTTCAAAAATATTTTGTCAGTTAATCACTTTTCGATATCTTTCACGGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACCGTGAGCTTCTATTGGAGGAAAACCGTACTTTATTTTCTTGCATTTCCGARAGGCAAACGTTTTCCTCTGTCTCTGAAAAAGTCCATAAAGGCGATTACCAGCAGAATTTTTTTCTAATATCCATAACTCAATTTTGCTATTATTTTGAAAAAACAACATTATGTTTACTGCATTTGCAGAATCAGCATTCTACAATACTGACTCATCAAAAAACCTATCGGTTTGATGTTTGCGCTTCTTAATATACGTTTATTTACATTGTACCTCTCTCCGTACCGACTCTCTATCATTCGTTGAGTTTTCGAATTGGAACTCACTTCATTTCGAAAAAGTTTTTTCATGTGGCCATTTTCTCTTTTTTCAGCTTCTTCGATGTCACAGAAGAAGGAAACAAATATCAGCGTTGATCCCTTCACGGGTCAGGATGTCTTGAAAACGAAGGCGTTCTCATGGAGAGGTCAGTGACAGAAAATAACATGTGTCTCTTAAAAATAAACTGAAAATTCCAGAAATCCATCTTCAAATTTTTTTCCTGACTATTCCTCTTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCCTAAAAGTCCACTCAAAG</pcr_primer_p1>
		<pcr_primer_p2>ATAGCAAAATTGAGTTATGGATATT</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>CTTCCTAAAAGTCCACTCAAAGCGTTAATTGTGAACTCATATATCTCATTTCTTGTGAGAGATATCACAAAGCGGTCAATTAACAAAATATTTATCATCATTTCAAAAATATTTTGTCAGTTAATCACTTTTCGATATCTTTCACGGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACCGTGAGCTTCTATTGGAGGAAAACCGTACTTTATTTTCTTGCATTTCCGAGAGGCAAACGTTTTCCTCTGTCTCTGAAAAAGTCCATAAAGGCGATTACCAGCAGAATTTTTTTCTAATATCCATAACTCAATTTTGCTAT</canonical_amplicon>
		<polymorphic_amplicon>CTTCCTAAAAGTCCACTCAAAGCGTTAATTGTGAACTCATATATCTCATTTCTTGTGAGAGATATCACAAAGCGGTCAATTAACAAAATATTTATCATCATTTCAAAAATATTTTGTCAGTTAATCACTTTTCGATATCTTTCACGGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACCGTGAGCTTCTATTGGAGGAAAACCGTACTTTATTTTCTTGCATTTCCGARAGGCAAACGTTTTCCTCTGTCTCTGAAAAAGTCCATAAAGGCGATTACCAGCAGAATTTTTTTCTAATATCCATAACTCAATTTTGCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17560</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>206703</contig_pos>
        <strand>+</strand>
        <context>AATTTTTTTC[A/T]AATATCCATA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCTGTCTCTGAAAAAGTCCATAAAGGCGATTACCAGCAGAATTTTTTTC</left_flank>
        <right_flank>AATATCCATAACTCAATTTTGCTATTATTTTGAAAAAACAACATTATGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTTGTGTTAATCTGAAGTCACATTTTGATTATTGGAAATGTATGACTTTTTTATGTTCTTTTCTATTAATTTATTAAACAACGAATGCATGTTTTTTCTTGTTCCACGGACAAGCCAACGAACCCATTCATATCTAGTGGATGCTTATTTGCCGACTCTGCCTTGTCAATTGTAAGAAAAAAGTTCAAGTTATCGTGTTCCTTCCTAAAAGTCCACTCAAAGCGTTAATTGTGAACTCATATATCTCATTTCTTGTGAGAGATATCACAAAGCGGTCAATTAACAAAATATTTATCATCATTTCAAAAATATTTTGTCAGTTAATCACTTTTCGATATCTTTCACGGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACCGTGAGCTTCTATTGGAGGAAAACCGTACTTTATTTTCTTGCATTTCCGAGAGGCAAACGTTTTCCTCTGTCTCTGAAAAAGTCCATAAAGGCGATTACCAGCAGAATTTTTTTCTAATATCCATAACTCAATTTTGCTATTATTTTGAAAAAACAACATTATGTTTACTGCATTTGCAGAATCAGCATTCTACAATACTGACTCATCAAAAAACCTATCGGTTTGATGTTTGCGCTTCTTAATATACGTTTATTTACATTGTACCTCTCTCCGTACCGACTCTCTATCATTCGTTGAGTTTTCGAATTGGAACTCACTTCATTTCGAAAAAGTTTTTTCATGTGGCCATTTTCTCTTTTTTCAGCTTCTTCGATGTCACAGAAGAAGGAAACAAATATCAGCGTTGATCCCTTCACGGGTCAGGATGTCTTGAAAACGAAGGCGTTCTCATGGAGAGGTCAGTGACAGAAAATAACATGTGTCTCTTAAAAATAAACTGAAAATTCCAGAAATCCATCTTCAAATTTTTTTCCTGACTATTCCTCTTCCACTGTTTTTCATAGTCACCGGAATTCTCCAAATCAATGATTGTGACACGTCTCTGGCTATTTGGAT</canonical>
            <polymorphic>CAGTTGTGTTAATCTGAAGTCACATTTTGATTATTGGAAATGTATGACTTTTTTATGTTCTTTTCTATTAATTTATTAAACAACGAATGCATGTTTTTTCTTGTTCCACGGACAAGCCAACGAACCCATTCATATCTAGTGGATGCTTATTTGCCGACTCTGCCTTGTCAATTGTAAGAAAAAAGTTCAAGTTATCGTGTTCCTTCCTAAAAGTCCACTCAAAGCGTTAATTGTGAACTCATATATCTCATTTCTTGTGAGAGATATCACAAAGCGGTCAATTAACAAAATATTTATCATCATTTCAAAAATATTTTGTCAGTTAATCACTTTTCGATATCTTTCACGGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACCGTGAGCTTCTATTGGAGGAAAACCGTACTTTATTTTCTTGCATTTCCGAGAGGCAAACGTTTTCCTCTGTCTCTGAAAAAGTCCATAAAGGCGATTACCAGCAGAATTTTTTTCWAATATCCATAACTCAATTTTGCTATTATTTTGAAAAAACAACATTATGTTTACTGCATTTGCAGAATCAGCATTCTACAATACTGACTCATCAAAAAACCTATCGGTTTGATGTTTGCGCTTCTTAATATACGTTTATTTACATTGTACCTCTCTCCGTACCGACTCTCTATCATTCGTTGAGTTTTCGAATTGGAACTCACTTCATTTCGAAAAAGTTTTTTCATGTGGCCATTTTCTCTTTTTTCAGCTTCTTCGATGTCACAGAAGAAGGAAACAAATATCAGCGTTGATCCCTTCACGGGTCAGGATGTCTTGAAAACGAAGGCGTTCTCATGGAGAGGTCAGTGACAGAAAATAACATGTGTCTCTTAAAAATAAACTGAAAATTCCAGAAATCCATCTTCAAATTTTTTTCCTGACTATTCCTCTTCCACTGTTTTTCATAGTCACCGGAATTCTCCAAATCAATGATTGTGACACGTCTCTGGCTATTTGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCCTCTGTCTCTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAAACTCAACGAATGATAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCCTCTGTCTCTGAAAAAGTCCATAAAGGCGATTACCAGCAGAATTTTTTTCTAATATCCATAACTCAATTTTGCTATTATTTTGAAAAAACAACATTATGTTTACTGCATTTGCAGAATCAGCATTCTACAATACTGACTCATCAAAAAACCTATCGGTTTGATGTTTGCGCTTCTTAATATACGTTTATTTACATTGTACCTCTCTCCGTACCGACTCTCTATCATTCGTTGAGTTTTC</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCCTCTGTCTCTGAAAAAGTCCATAAAGGCGATTACCAGCAGAATTTTTTTCWAATATCCATAACTCAATTTTGCTATTATTTTGAAAAAACAACATTATGTTTACTGCATTTGCAGAATCAGCATTCTACAATACTGACTCATCAAAAAACCTATCGGTTTGATGTTTGCGCTTCTTAATATACGTTTATTTACATTGTACCTCTCTCCGTACCGACTCTCTATCATTCGTTGAGTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17561</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>206750</contig_pos>
        <strand>+</strand>
        <context>AACAACATTA[G/T]GTTTACTGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCTAATATCCATAACTCAATTTTGCTATTATTTTGAAAAAACAACATTA</left_flank>
        <right_flank>GTTTACTGCATTTGCAGAATCAGCATTCTACAATACTGACTCATCAAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTTTATGTTCTTTTCTATTAATTTATTAAACAACGAATGCATGTTTTTTCTTGTTCCACGGACAAGCCAACGAACCCATTCATATCTAGTGGATGCTTATTTGCCGACTCTGCCTTGTCAATTGTAAGAAAAAAGTTCAAGTTATCGTGTTCCTTCCTAAAAGTCCACTCAAAGCGTTAATTGTGAACTCATATATCTCATTTCTTGTGAGAGATATCACAAAGCGGTCAATTAACAAAATATTTATCATCATTTCAAAAATATTTTGTCAGTTAATCACTTTTCGATATCTTTCACGGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACCGTGAGCTTCTATTGGAGGAAAACCGTACTTTATTTTCTTGCATTTCCGAGAGGCAAACGTTTTCCTCTGTCTCTGAAAAAGTCCATAAAGGCGATTACCAGCAGAATTTTTTTCTAATATCCATAACTCAATTTTGCTATTATTTTGAAAAAACAACATTATGTTTACTGCATTTGCAGAATCAGCATTCTACAATACTGACTCATCAAAAAACCTATCGGTTTGATGTTTGCGCTTCTTAATATACGTTTATTTACATTGTACCTCTCTCCGTACCGACTCTCTATCATTCGTTGAGTTTTCGAATTGGAACTCACTTCATTTCGAAAAAGTTTTTTCATGTGGCCATTTTCTCTTTTTTCAGCTTCTTCGATGTCACAGAAGAAGGAAACAAATATCAGCGTTGATCCCTTCACGGGTCAGGATGTCTTGAAAACGAAGGCGTTCTCATGGAGAGGTCAGTGACAGAAAATAACATGTGTCTCTTAAAAATAAACTGAAAATTCCAGAAATCCATCTTCAAATTTTTTTCCTGACTATTCCTCTTCCACTGTTTTTCATAGTCACCGGAATTCTCCAAATCAATGATTGTGACACGTCTCTGGCTATTTGGATGATCATCATGGGAATTATGATTGGAGTTGAATTAATCCATGTCTCTG</canonical>
            <polymorphic>CTTTTTTATGTTCTTTTCTATTAATTTATTAAACAACGAATGCATGTTTTTTCTTGTTCCACGGACAAGCCAACGAACCCATTCATATCTAGTGGATGCTTATTTGCCGACTCTGCCTTGTCAATTGTAAGAAAAAAGTTCAAGTTATCGTGTTCCTTCCTAAAAGTCCACTCAAAGCGTTAATTGTGAACTCATATATCTCATTTCTTGTGAGAGATATCACAAAGCGGTCAATTAACAAAATATTTATCATCATTTCAAAAATATTTTGTCAGTTAATCACTTTTCGATATCTTTCACGGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACCGTGAGCTTCTATTGGAGGAAAACCGTACTTTATTTTCTTGCATTTCCGAGAGGCAAACGTTTTCCTCTGTCTCTGAAAAAGTCCATAAAGGCGATTACCAGCAGAATTTTTTTCTAATATCCATAACTCAATTTTGCTATTATTTTGAAAAAACAACATTAKGTTTACTGCATTTGCAGAATCAGCATTCTACAATACTGACTCATCAAAAAACCTATCGGTTTGATGTTTGCGCTTCTTAATATACGTTTATTTACATTGTACCTCTCTCCGTACCGACTCTCTATCATTCGTTGAGTTTTCGAATTGGAACTCACTTCATTTCGAAAAAGTTTTTTCATGTGGCCATTTTCTCTTTTTTCAGCTTCTTCGATGTCACAGAAGAAGGAAACAAATATCAGCGTTGATCCCTTCACGGGTCAGGATGTCTTGAAAACGAAGGCGTTCTCATGGAGAGGTCAGTGACAGAAAATAACATGTGTCTCTTAAAAATAAACTGAAAATTCCAGAAATCCATCTTCAAATTTTTTTCCTGACTATTCCTCTTCCACTGTTTTTCATAGTCACCGGAATTCTCCAAATCAATGATTGTGACACGTCTCTGGCTATTTGGATGATCATCATGGGAATTATGATTGGAGTTGAATTAATCCATGTCTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCCTCTGTCTCTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAAACTCAACGAATGATAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCCTCTGTCTCTGAAAAAGTCCATAAAGGCGATTACCAGCAGAATTTTTTTCTAATATCCATAACTCAATTTTGCTATTATTTTGAAAAAACAACATTATGTTTACTGCATTTGCAGAATCAGCATTCTACAATACTGACTCATCAAAAAACCTATCGGTTTGATGTTTGCGCTTCTTAATATACGTTTATTTACATTGTACCTCTCTCCGTACCGACTCTCTATCATTCGTTGAGTTTTC</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCCTCTGTCTCTGAAAAAGTCCATAAAGGCGATTACCAGCAGAATTTTTTTCTAATATCCATAACTCAATTTTGCTATTATTTTGAAAAAACAACATTAKGTTTACTGCATTTGCAGAATCAGCATTCTACAATACTGACTCATCAAAAAACCTATCGGTTTGATGTTTGCGCTTCTTAATATACGTTTATTTACATTGTACCTCTCTCCGTACCGACTCTCTATCATTCGTTGAGTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17562</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>206918</contig_pos>
        <strand>+</strand>
        <context>CATTTCGAAA[A/T]AGTTTTTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCTCTATCATTCGTTGAGTTTTCGAATTGGAACTCACTTCATTTCGAAA</left_flank>
        <right_flank>AGTTTTTTCATGTGGCCATTTTCTCTTTTTTCAGCTTCTTCGATGTCACA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTCAAAGCGTTAATTGTGAACTCATATATCTCATTTCTTGTGAGAGATATCACAAAGCGGTCAATTAACAAAATATTTATCATCATTTCAAAAATATTTTGTCAGTTAATCACTTTTCGATATCTTTCACGGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACCGTGAGCTTCTATTGGAGGAAAACCGTACTTTATTTTCTTGCATTTCCGAGAGGCAAACGTTTTCCTCTGTCTCTGAAAAAGTCCATAAAGGCGATTACCAGCAGAATTTTTTTCTAATATCCATAACTCAATTTTGCTATTATTTTGAAAAAACAACATTATGTTTACTGCATTTGCAGAATCAGCATTCTACAATACTGACTCATCAAAAAACCTATCGGTTTGATGTTTGCGCTTCTTAATATACGTTTATTTACATTGTACCTCTCTCCGTACCGACTCTCTATCATTCGTTGAGTTTTCGAATTGGAACTCACTTCATTTCGAAAAAGTTTTTTCATGTGGCCATTTTCTCTTTTTTCAGCTTCTTCGATGTCACAGAAGAAGGAAACAAATATCAGCGTTGATCCCTTCACGGGTCAGGATGTCTTGAAAACGAAGGCGTTCTCATGGAGAGGTCAGTGACAGAAAATAACATGTGTCTCTTAAAAATAAACTGAAAATTCCAGAAATCCATCTTCAAATTTTTTTCCTGACTATTCCTCTTCCACTGTTTTTCATAGTCACCGGAATTCTCCAAATCAATGATTGTGACACGTCTCTGGCTATTTGGATGATCATCATGGGAATTATGATTGGAGTTGAATTAATCCATGTCTCTGTATTCTTCCACAGAGCGGCTGTTCAAAAGAATGAGATGGATTTGGAAGATGACGATATTTTCGATCACTATGAGCCACTCAAAGATCCAATCGTGAAACGCATAGTCAGAATCCACTCGGTCACTGGTCTTCTGTAAGTTTCTTCCCCAAAAAGGTTTTTATGAAACC</canonical>
            <polymorphic>CACTCAAAGCGTTAATTGTGAACTCATATATCTCATTTCTTGTGAGAGATATCACAAAGCGGTCAATTAACAAAATATTTATCATCATTTCAAAAATATTTTGTCAGTTAATCACTTTTCGATATCTTTCACGGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACCGTGAGCTTCTATTGGAGGAAAACCGTACTTTATTTTCTTGCATTTCCGAGAGGCAAACGTTTTCCTCTGTCTCTGAAAAAGTCCATAAAGGCGATTACCAGCAGAATTTTTTTCTAATATCCATAACTCAATTTTGCTATTATTTTGAAAAAACAACATTATGTTTACTGCATTTGCAGAATCAGCATTCTACAATACTGACTCATCAAAAAACCTATCGGTTTGATGTTTGCGCTTCTTAATATACGTTTATTTACATTGTACCTCTCTCCGTACCGACTCTCTATCATTCGTTGAGTTTTCGAATTGGAACTCACTTCATTTCGAAAWAGTTTTTTCATGTGGCCATTTTCTCTTTTTTCAGCTTCTTCGATGTCACAGAAGAAGGAAACAAATATCAGCGTTGATCCCTTCACGGGTCAGGATGTCTTGAAAACGAAGGCGTTCTCATGGAGAGGTCAGTGACAGAAAATAACATGTGTCTCTTAAAAATAAACTGAAAATTCCAGAAATCCATCTTCAAATTTTTTTCCTGACTATTCCTCTTCCACTGTTTTTCATAGTCACCGGAATTCTCCAAATCAATGATTGTGACACGTCTCTGGCTATTTGGATGATCATCATGGGAATTATGATTGGAGTTGAATTAATCCATGTCTCTGTATTCTTCCACAGAGCGGCTGTTCAAAAGAATGAGATGGATTTGGAAGATGACGATATTTTCGATCACTATGAGCCACTCAAAGATCCAATCGTGAAACGCATAGTCAGAATCCACTCGGTCACTGGTCTTCTGTAAGTTTCTTCCCCAAAAAGGTTTTTATGAAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGTTTGCGCTTCTTAATATAC</pcr_primer_p1>
		<pcr_primer_p2>TTATTTTCTGTCACTGACCTCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GATGTTTGCGCTTCTTAATATACGTTTATTTACATTGTACCTCTCTCCGTACCGACTCTCTATCATTCGTTGAGTTTTCGAATTGGAACTCACTTCATTTCGAAAAAGTTTTTTCATGTGGCCATTTTCTCTTTTTTCAGCTTCTTCGATGTCACAGAAGAAGGAAACAAATATCAGCGTTGATCCCTTCACGGGTCAGGATGTCTTGAAAACGAAGGCGTTCTCATGGAGAGGTCAGTGACAGAAAATAA</canonical_amplicon>
		<polymorphic_amplicon>GATGTTTGCGCTTCTTAATATACGTTTATTTACATTGTACCTCTCTCCGTACCGACTCTCTATCATTCGTTGAGTTTTCGAATTGGAACTCACTTCATTTCGAAAWAGTTTTTTCATGTGGCCATTTTCTCTTTTTTCAGCTTCTTCGATGTCACAGAAGAAGGAAACAAATATCAGCGTTGATCCCTTCACGGGTCAGGATGTCTTGAAAACGAAGGCGTTCTCATGGAGAGGTCAGTGACAGAAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17563</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>206953</contig_pos>
        <strand>+</strand>
        <context>CTTTTTTCAG[C/T]TTCTTCGATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACTTCATTTCGAAAAAGTTTTTTCATGTGGCCATTTTCTCTTTTTTCAG</left_flank>
        <right_flank>TTCTTCGATGTCACAGAAGAAGGAAACAAATATCAGCGTTGATCCCTTCA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTTGTGAGAGATATCACAAAGCGGTCAATTAACAAAATATTTATCATCATTTCAAAAATATTTTGTCAGTTAATCACTTTTCGATATCTTTCACGGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACCGTGAGCTTCTATTGGAGGAAAACCGTACTTTATTTTCTTGCATTTCCGAGAGGCAAACGTTTTCCTCTGTCTCTGAAAAAGTCCATAAAGGCGATTACCAGCAGAATTTTTTTCTAATATCCATAACTCAATTTTGCTATTATTTTGAAAAAACAACATTATGTTTACTGCATTTGCAGAATCAGCATTCTACAATACTGACTCATCAAAAAACCTATCGGTTTGATGTTTGCGCTTCTTAATATACGTTTATTTACATTGTACCTCTCTCCGTACCGACTCTCTATCATTCGTTGAGTTTTCGAATTGGAACTCACTTCATTTCGAAAAAGTTTTTTCATGTGGCCATTTTCTCTTTTTTCAGCTTCTTCGATGTCACAGAAGAAGGAAACAAATATCAGCGTTGATCCCTTCACGGGTCAGGATGTCTTGAAAACGAAGGCGTTCTCATGGAGAGGTCAGTGACAGAAAATAACATGTGTCTCTTAAAAATAAACTGAAAATTCCAGAAATCCATCTTCAAATTTTTTTCCTGACTATTCCTCTTCCACTGTTTTTCATAGTCACCGGAATTCTCCAAATCAATGATTGTGACACGTCTCTGGCTATTTGGATGATCATCATGGGAATTATGATTGGAGTTGAATTAATCCATGTCTCTGTATTCTTCCACAGAGCGGCTGTTCAAAAGAATGAGATGGATTTGGAAGATGACGATATTTTCGATCACTATGAGCCACTCAAAGATCCAATCGTGAAACGCATAGTCAGAATCCACTCGGTCACTGGTCTTCTGTAAGTTTCTTCCCCAAAAAGGTTTTTATGAAACCGAAAACTTTTCAGGTCCTATTTCGGAGGAGTCAAA</canonical>
            <polymorphic>TTTCTTGTGAGAGATATCACAAAGCGGTCAATTAACAAAATATTTATCATCATTTCAAAAATATTTTGTCAGTTAATCACTTTTCGATATCTTTCACGGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACCGTGAGCTTCTATTGGAGGAAAACCGTACTTTATTTTCTTGCATTTCCGAGAGGCAAACGTTTTCCTCTGTCTCTGAAAAAGTCCATAAAGGCGATTACCAGCAGAATTTTTTTCTAATATCCATAACTCAATTTTGCTATTATTTTGAAAAAACAACATTATGTTTACTGCATTTGCAGAATCAGCATTCTACAATACTGACTCATCAAAAAACCTATCGGTTTGATGTTTGCGCTTCTTAATATACGTTTATTTACATTGTACCTCTCTCCGTACCGACTCTCTATCATTCGTTGAGTTTTCGAATTGGAACTCACTTCATTTCGAAAAAGTTTTTTCATGTGGCCATTTTCTCTTTTTTCAGYTTCTTCGATGTCACAGAAGAAGGAAACAAATATCAGCGTTGATCCCTTCACGGGTCAGGATGTCTTGAAAACGAAGGCGTTCTCATGGAGAGGTCAGTGACAGAAAATAACATGTGTCTCTTAAAAATAAACTGAAAATTCCAGAAATCCATCTTCAAATTTTTTTCCTGACTATTCCTCTTCCACTGTTTTTCATAGTCACCGGAATTCTCCAAATCAATGATTGTGACACGTCTCTGGCTATTTGGATGATCATCATGGGAATTATGATTGGAGTTGAATTAATCCATGTCTCTGTATTCTTCCACAGAGCGGCTGTTCAAAAGAATGAGATGGATTTGGAAGATGACGATATTTTCGATCACTATGAGCCACTCAAAGATCCAATCGTGAAACGCATAGTCAGAATCCACTCGGTCACTGGTCTTCTGTAAGTTTCTTCCCCAAAAAGGTTTTTATGAAACCGAAAACTTTTCAGGTCCTATTTCGGAGGAGTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>501 359 116 24</canonical_bands>
                <polymorphic_bands>860 116 24</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>340 241 129 116 75 56 24 19</canonical_bands>
                <polymorphic_bands>340 260 129 116 75 56 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATGTTTGCGCTTCTTAATATAC</pcr_primer_p1>
		<pcr_primer_p2>TTATTTTCTGTCACTGACCTCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GATGTTTGCGCTTCTTAATATACGTTTATTTACATTGTACCTCTCTCCGTACCGACTCTCTATCATTCGTTGAGTTTTCGAATTGGAACTCACTTCATTTCGAAAAAGTTTTTTCATGTGGCCATTTTCTCTTTTTTCAGCTTCTTCGATGTCACAGAAGAAGGAAACAAATATCAGCGTTGATCCCTTCACGGGTCAGGATGTCTTGAAAACGAAGGCGTTCTCATGGAGAGGTCAGTGACAGAAAATAA</canonical_amplicon>
		<polymorphic_amplicon>GATGTTTGCGCTTCTTAATATACGTTTATTTACATTGTACCTCTCTCCGTACCGACTCTCTATCATTCGTTGAGTTTTCGAATTGGAACTCACTTCATTTCGAAAAAGTTTTTTCATGTGGCCATTTTCTCTTTTTTCAGYTTCTTCGATGTCACAGAAGAAGGAAACAAATATCAGCGTTGATCCCTTCACGGGTCAGGATGTCTTGAAAACGAAGGCGTTCTCATGGAGAGGTCAGTGACAGAAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17564</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>208167</contig_pos>
        <strand>+</strand>
        <context>ATGGRATCAC[A/G]CCGCCTTCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCAATGGCTTCAAGTTCCAAAGGTCCAACGTCATCATCCGATGGAATCAC</left_flank>
        <right_flank>CCGCCTTCCTGAAGACTAAATTAGAATTTCATTTCAACCGTTAAAAGAAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAATTATCATCAATACAGCTTTGTTGAACTTATTGTTTTCTACTGAACGGTTACCTGAAATTTTTCTGTTTAAAATAAAATTCTTAAAATTCCTACCTCTGCTAATTTATTCAACTTCTCAGCTACACACTCGTTGAACTTCGTTGCATGATCTGGTGATATGAATTTCAGCAATTCGCGAGCATTTCGGTAGTACTTTGTATGAAGGGAGATCGGAAAACGAGATTTTGAAAACATTAAATTATTCAGTAAATGTTACCTTTGTATAATCTCCGTTCATACAATCCGTATGCGATGAAGCAATTCTCCACCCCTTCATAGTTAACTCCAGGGTGTATGGTGAGCCTTCTTGGGTCTTAACATTGACAAAAATGAGGTCACTGGTCCTTGGAAGCATTTCGGAGACACTTATGTCTTCTACTTCGTGGGCCAACTCGTGAACCGCAGCAATGGCTTCAAGTTCCAAAGGTCCAACGTCATCATCCGATGGAATCACGCCGCCTTCCTGAAGACTAAATTAGAATTTCATTTCAACCGTTAAAAGAACTCACCATTTCATGACGTCTTCTATTCATATCGGCAATCTCTTCCAACGAAATTGGAGTTCTAAAATACTTCTCACTCTGCTTAGTCAGCAGAACCGAATACTCACTTTGGAATCGACATTTTCGGGCTGATCATTTGATTTATGTAGGCGTTGTCGAACCCGAATTTTTCCTTCTCTTCCAAAGTTGGCGAAACAGCACGAGAAGTTCGGTATACCTGTGCGGCCGCGTTCCAGCGTGCTGAACTAAAAATGAAAAGAATAGGAAAAGGTTTAGAGAGAAAGGAAGCTGAAATGAATGCAATTGTGTATGTGTTTGTGTGGGAAGAACGATAAACAAAAGGAAAAGAGAAGCTGAATGATAAACAAAACTATGTAACATAATAAAATAACAATGGGACACAGAAGATTTTCAATGGAAATCGAAGATGTGGATTTTTGATCTTTTGATTC</canonical>
            <polymorphic>GAAAAATTATCATCAATACAGCTTTGTTGAACTTATTGTTTTCTACTGAACGGTTACCTGAAATTTTTCTGTTTAAAATAAAATTCTTAAAATTCCTACCTCTGCTAATTTATTCAACTTCTCAGCTACACACTCGTTGAACTTCGTTGCATGATCTGGTGATATGAATTTCAGCAATTCGCGAGCATTTCGGTAGTACTTTGTATGAAGGGAGATCGGAAAACGAGATTTTGAAAACATTAAATTATTCAGTAAATGTTACCTTTGTATAATCTCCGTTCATACAATCCGTATGCGATGAAGCAATTCTCCACCCCTTCATAGTTAACTCCAGGGTGTATGGTGAGCCTTCTTGGGTCTTAACATTGACAAAAATGAGGTCACTGGTCCTTGGAAGCATTTCGGAGACACTTATGTCTTCTACTTCGTGGGCCAACTCGTGAACCGCAGCAATGGCTTCAAGTTCCAAAGGTCCAACGTCATCATCCGATGGAATCACRCCGCCTTCCTGAAGACTAAATTAGAATTTCATTTCAACCGTTAAAAGAACTCACCATTTCATGACGTCTTCTATTCATATCGGCAATCTCTTCCAACGAAATTGGAGTTCTAAAATACTTCTCACTCTGCTTAGTCAGCAGAACCGAATACTCACTTTGGAATCGACATTTTCGGGCTGATCATTTGATTTATGTAGGCGTTGTCGAACCCGAATTTTTCCTTCTCTTCCAAAGTTGGCGAAACAGCACGAGAAGTTCGGTATACCTGTGCGGCCGCGTTCCAGCGTGCTGAACTAAAAATGAAAAGAATAGGAAAAGGTTTAGAGAGAAAGGAAGCTGAAATGAATGCAATTGTGTATGTGTTTGTGTGGGAAGAACGATAAACAAAAGGAAAAGAGAAGCTGAATGATAAACAAAACTATGTAACATAATAAAATAACAATGGGACACAGAAGATTTTCAATGGAAATCGAAGATGTGGATTTTTGATCTTTTGATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>450 270 227 53</canonical_bands>
                <polymorphic_bands>450 323 227</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>503 270 227</canonical_bands>
                <polymorphic_bands>773 227</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCATAGTTAACTCCAGGGTGTA</pcr_primer_p1>
		<pcr_primer_p2>GTCATGAAATGGTGAGTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTCATAGTTAACTCCAGGGTGTATGGTGAGCCTTCTTGGGTCTTAACATTGACAAAAATGAGGTCACTGGTCCTTGGAAGCATTTCGGAGACACTTATGTCTTCTACTTCGTGGGCCAACTCGTGAACCGCAGCAATGGCTTCAAGTTCCAAAGGTCCAACGTCATCATCCGATGGAATCACGCCGCCTTCCTGAAGACTAAATTAGAATTTCATTTCAACCGTTAAAAGAACTCACCATTTCATGAC</canonical_amplicon>
		<polymorphic_amplicon>TTCATAGTTAACTCCAGGGTGTATGGTGAGCCTTCTTGGGTCTTAACATTGACAAAAATGAGGTCACTGGTCCTTGGAAGCATTTCGGAGACACTTATGTCTTCTACTTCGTGGGCCAACTCGTGAACCGCAGCAATGGCTTCAAGTTCCAAAGGTCCAACGTCATCATCCGATGGAATCACRCCGCCTTCCTGAAGACTAAATTAGAATTTCATTTCAACCGTTAAAAGAACTCACCATTTCATGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17565</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>208161</contig_pos>
        <strand>+</strand>
        <context>CATCCGATGG[A/G]ATCACRCCGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCGCAGCAATGGCTTCAAGTTCCAAAGGTCCAACGTCATCATCCGATGG</left_flank>
        <right_flank>ATCACGCCGCCTTCCTGAAGACTAAATTAGAATTTCATTTCAACCGTTAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCTTCGAAAAATTATCATCAATACAGCTTTGTTGAACTTATTGTTTTCTACTGAACGGTTACCTGAAATTTTTCTGTTTAAAATAAAATTCTTAAAATTCCTACCTCTGCTAATTTATTCAACTTCTCAGCTACACACTCGTTGAACTTCGTTGCATGATCTGGTGATATGAATTTCAGCAATTCGCGAGCATTTCGGTAGTACTTTGTATGAAGGGAGATCGGAAAACGAGATTTTGAAAACATTAAATTATTCAGTAAATGTTACCTTTGTATAATCTCCGTTCATACAATCCGTATGCGATGAAGCAATTCTCCACCCCTTCATAGTTAACTCCAGGGTGTATGGTGAGCCTTCTTGGGTCTTAACATTGACAAAAATGAGGTCACTGGTCCTTGGAAGCATTTCGGAGACACTTATGTCTTCTACTTCGTGGGCCAACTCGTGAACCGCAGCAATGGCTTCAAGTTCCAAAGGTCCAACGTCATCATCCGATGGAATCACGCCGCCTTCCTGAAGACTAAATTAGAATTTCATTTCAACCGTTAAAAGAACTCACCATTTCATGACGTCTTCTATTCATATCGGCAATCTCTTCCAACGAAATTGGAGTTCTAAAATACTTCTCACTCTGCTTAGTCAGCAGAACCGAATACTCACTTTGGAATCGACATTTTCGGGCTGATCATTTGATTTATGTAGGCGTTGTCGAACCCGAATTTTTCCTTCTCTTCCAAAGTTGGCGAAACAGCACGAGAAGTTCGGTATACCTGTGCGGCCGCGTTCCAGCGTGCTGAACTAAAAATGAAAAGAATAGGAAAAGGTTTAGAGAGAAAGGAAGCTGAAATGAATGCAATTGTGTATGTGTTTGTGTGGGAAGAACGATAAACAAAAGGAAAAGAGAAGCTGAATGATAAACAAAACTATGTAACATAATAAAATAACAATGGGACACAGAAGATTTTCAATGGAAATCGAAGATGTGGATTTTTGATCTTT</canonical>
            <polymorphic>TGCTTCGAAAAATTATCATCAATACAGCTTTGTTGAACTTATTGTTTTCTACTGAACGGTTACCTGAAATTTTTCTGTTTAAAATAAAATTCTTAAAATTCCTACCTCTGCTAATTTATTCAACTTCTCAGCTACACACTCGTTGAACTTCGTTGCATGATCTGGTGATATGAATTTCAGCAATTCGCGAGCATTTCGGTAGTACTTTGTATGAAGGGAGATCGGAAAACGAGATTTTGAAAACATTAAATTATTCAGTAAATGTTACCTTTGTATAATCTCCGTTCATACAATCCGTATGCGATGAAGCAATTCTCCACCCCTTCATAGTTAACTCCAGGGTGTATGGTGAGCCTTCTTGGGTCTTAACATTGACAAAAATGAGGTCACTGGTCCTTGGAAGCATTTCGGAGACACTTATGTCTTCTACTTCGTGGGCCAACTCGTGAACCGCAGCAATGGCTTCAAGTTCCAAAGGTCCAACGTCATCATCCGATGGRATCACGCCGCCTTCCTGAAGACTAAATTAGAATTTCATTTCAACCGTTAAAAGAACTCACCATTTCATGACGTCTTCTATTCATATCGGCAATCTCTTCCAACGAAATTGGAGTTCTAAAATACTTCTCACTCTGCTTAGTCAGCAGAACCGAATACTCACTTTGGAATCGACATTTTCGGGCTGATCATTTGATTTATGTAGGCGTTGTCGAACCCGAATTTTTCCTTCTCTTCCAAAGTTGGCGAAACAGCACGAGAAGTTCGGTATACCTGTGCGGCCGCGTTCCAGCGTGCTGAACTAAAAATGAAAAGAATAGGAAAAGGTTTAGAGAGAAAGGAAGCTGAAATGAATGCAATTGTGTATGTGTTTGTGTGGGAAGAACGATAAACAAAAGGAAAAGAGAAGCTGAATGATAAACAAAACTATGTAACATAATAAAATAACAATGGGACACAGAAGATTTTCAATGGAAATCGAAGATGTGGATTTTTGATCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>499 334 167</canonical_bands>
                <polymorphic_bands>666 334</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>499 334 167</canonical_bands>
                <polymorphic_bands>666 334</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCATAGTTAACTCCAGGGTGTA</pcr_primer_p1>
		<pcr_primer_p2>GTCATGAAATGGTGAGTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTCATAGTTAACTCCAGGGTGTATGGTGAGCCTTCTTGGGTCTTAACATTGACAAAAATGAGGTCACTGGTCCTTGGAAGCATTTCGGAGACACTTATGTCTTCTACTTCGTGGGCCAACTCGTGAACCGCAGCAATGGCTTCAAGTTCCAAAGGTCCAACGTCATCATCCGATGGAATCACGCCGCCTTCCTGAAGACTAAATTAGAATTTCATTTCAACCGTTAAAAGAACTCACCATTTCATGAC</canonical_amplicon>
		<polymorphic_amplicon>TTCATAGTTAACTCCAGGGTGTATGGTGAGCCTTCTTGGGTCTTAACATTGACAAAAATGAGGTCACTGGTCCTTGGAAGCATTTCGGAGACACTTATGTCTTCTACTTCGTGGGCCAACTCGTGAACCGCAGCAATGGCTTCAAGTTCCAAAGGTCCAACGTCATCATCCGATGGRATCACGCCGCCTTCCTGAAGACTAAATTAGAATTTCATTTCAACCGTTAAAAGAACTCACCATTTCATGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17566</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>211583</contig_pos>
        <strand>+</strand>
        <context>TGACCTCTGG[A/G]AAAAATAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGAATGTAGTACATACGATCAGAGACTGGTTTCTCGAGGTGACCTCTGG</left_flank>
        <right_flank>AAAAATAAACAAGGGTGTGGATGGTATTAGCAGATATGCTAACCTATAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTACGAACTTTTTAAGTGAAGTTTTATGTTAGAAAATCTTACCATAAGCTAGGTCTATGGGTTACTGTAAGAAGGGTAATTCCATTATCTTTGATGGCTTGATAAATGCTTCCCTCTACATCAATAGAAACTGCAGATGTGCATTCATCAAGAAGAGCATACTTGGGTCTGAATTTTTCAAACTTGAAGACAGATTCACTTGAATAACTTACCTATGATAGAATACTCTAGCCATTCCCATCCTCTGCTTCTCTCCTCCTGAAAGCACATCCATCCAATCGTTCTGTGCGTCCCAACCACCTTCTCTCTCCACAATATGCTCCAAATGCACAATTCTCAACATAATCATGAGGTCTTGATCAGTGATTCCGCGTCGTCTCATTTGAACTGTGGTATCTGGATAGATCACTTGATCTCGAAGTGTTCCAAGAGTCATGTATGGTCTTTGTGGAATGTAGTACATACGATCAGAGACTGGTTTCTCGAGGTGACCTCTGGAAAAAATAAACAAGGGTGTGGATGGTATTAGCAGATATGCTAACCTATAAACTGGCCAAAGTCCTCCGAGAATTCTGAAAAGGGAACTCTTTCCGCATCCGTTGGGTCCAGTTATCAGCACGTGCATTCCAGGAGTGATCTATAAAATTTCATGGTTTCCGAACAATTTTTTAGATTCAAAAATCTTACCGTCAGCGACATGTTCTTCACAACTACATCCCCGTTTGGTGTGACTATCGGAACAGAGTTGAGTACAATCTCATCGGTTTCAGAGTCTGTGATGACACCTGGAATAACCAAATTAACATCCATTCAACAAATTCAGTATCTCACCCTCAATCCGACTAGTATCGAATCTCTCTCCTCTCTGCCCTTCCACTGCACCTCCACTAACAAGTTGTCTCTGATAGATTCCTTTCTTTGCATCATCGAACACTTTGAACATCTCATGAACTCTTCCTGTGTATCCAGCCAATTCAGTAACCTCCTTATAACTTGTCA</canonical>
            <polymorphic>ATTACGAACTTTTTAAGTGAAGTTTTATGTTAGAAAATCTTACCATAAGCTAGGTCTATGGGTTACTGTAAGAAGGGTAATTCCATTATCTTTGATGGCTTGATAAATGCTTCCCTCTACATCAATAGAAACTGCAGATGTGCATTCATCAAGAAGAGCATACTTGGGTCTGAATTTTTCAAACTTGAAGACAGATTCACTTGAATAACTTACCTATGATAGAATACTCTAGCCATTCCCATCCTCTGCTTCTCTCCTCCTGAAAGCACATCCATCCAATCGTTCTGTGCGTCCCAACCACCTTCTCTCTCCACAATATGCTCCAAATGCACAATTCTCAACATAATCATGAGGTCTTGATCAGTGATTCCGCGTCGTCTCATTTGAACTGTGGTATCTGGATAGATCACTTGATCTCGAAGTGTTCCAAGAGTCATGTATGGTCTTTGTGGAATGTAGTACATACGATCAGAGACTGGTTTCTCGAGGTGACCTCTGGRAAAAATAAACAAGGGTGTGGATGGTATTAGCAGATATGCTAACCTATAAACTGGCCAAAGTCCTCCGAGAATTCTGAAAAGGGAACTCTTTCCGCATCCGTTGGGTCCAGTTATCAGCACGTGCATTCCAGGAGTGATCTATAAAATTTCATGGTTTCCGAACAATTTTTTAGATTCAAAAATCTTACCGTCAGCGACATGTTCTTCACAACTACATCCCCGTTTGGTGTGACTATCGGAACAGAGTTGAGTACAATCTCATCGGTTTCAGAGTCTGTGATGACACCTGGAATAACCAAATTAACATCCATTCAACAAATTCAGTATCTCACCCTCAATCCGACTAGTATCGAATCTCTCTCCTCTCTGCCCTTCCACTGCACCTCCACTAACAAGTTGTCTCTGATAGATTCCTTTCTTTGCATCATCGAACACTTTGAACATCTCATGAACTCTTCCTGTGTATCCAGCCAATTCAGTAACCTCCTTATAACTTGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>451 150 109 89 67 53 42 18 13 8</canonical_bands>
                <polymorphic_bands>464 150 109 89 67 53 42 18 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGCACAATTCTCAACATAAT</pcr_primer_p1>
		<pcr_primer_p2>ACTTTGGCCAGTTTATAGGTTAG</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>AAATGCACAATTCTCAACATAATCATGAGGTCTTGATCAGTGATTCCGCGTCGTCTCATTTGAACTGTGGTATCTGGATAGATCACTTGATCTCGAAGTGTTCCAAGAGTCATGTATGGTCTTTGTGGAATGTAGTACATACGATCAGAGACTGGTTTCTCGAGGTGACCTCTGGAAAAAATAAACAAGGGTGTGGATGGTATTAGCAGATATGCTAACCTATAAACTGGCCAAAGT</canonical_amplicon>
		<polymorphic_amplicon>AAATGCACAATTCTCAACATAATCATGAGGTCTTGATCAGTGATTCCGCGTCGTCTCATTTGAACTGTGGTATCTGGATAGATCACTTGATCTCGAAGTGTTCCAAGAGTCATGTATGGTCTTTGTGGAATGTAGTACATACGATCAGAGACTGGTTTCTCGAGGTGACCTCTGGRAAAAATAAACAAGGGTGTGGATGGTATTAGCAGATATGCTAACCTATAAACTGGCCAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17567</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>257092</contig_pos>
        <strand></strand>
        <context>ttctgttgta[T/G]cgtttgcggt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CCGAGATATATATCCTCAAAAAGCAAGTAGAGGGGTGGGCTTCTGTTGTA</left_flank>
        <right_flank>CGTTTGCGGTAACTCGAGGAAGAAAAAAATCCAAAAGTCTTTGACAAAAC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGGCTCCTAAATGGTGTATGTCTGTGACAACAGTTTCGGTTTGACGTAGTTCGTAGACATAAAAAGTTCTAACATCTAACACCAATAAAACAACCTGAAGATGAAAGGCTCTCGAAATAATAAAATGACAAGAACAAGGGGAAAGGAGAACAGGAAGAGAGAACAATGAGCAAACAATGGAACACAACAATATTATGGGGGTGGACACAGAAAACTTAATGAGAAAATCGTACCGGAAATTTCCAGAAATAGGTTGGGTTTAGATGAATCGTGATAATAGAATAGGAATCAAAATAGAGTTAGCACTCTAATGAAATGACCTCTAACTTTGAGCTCAATTATTTCGCTTCCTGGAAAAGGTATCAAAAGGTAGTCGACTATCAAAATGTTCACTATAATATCAAAAACATTTTGTCAATTGACCACTTTTTGATATCTATTACAGAAACCGAGATATATATCCTCAAAAAGCAAGTAGAGGGGTGGGCTTCTGTTGTATCGTTTGCGGTAACTCGAGGAAGAAAAAAATCCAAAAGTCTTTGACAAAACCAATAATTTTTGAAATTTCAGCAAAAAAAATTAAAGACATTTTTAGTCAATACCAATGTTAGAAAGAAACGCAAGCTCTCTTCCTCGTATCGCAAGATGCCTTAGACTCTAATTCCTAGGGATTAATTGAAAATAAAGACTTTTCTACTTTTATCAATTTTCACTTTCTTTTTTGGAAAATTTTTCGAACTGTGTCTCTTTGTTTCCAGTTATCAATAGAAAAAGAGCAAATGGATAAAAAAAAAGTAATGAATAAAGTACAGAAGTGATGTTTGATCAGAGGAGAAGAGACACAAAACTCATAAAATCATATGTGATGACCGGAAACTTTTTGGAGAGTGAATAAAAAATTAGGCCTAATTTTACCTTGAGAACTTTTGGTGCTTTGGATTGATTGAAAAATTCTAAAATTAGAAAGTTAATACCGTAAGGTCTGTAATAGAAGGGCCC</canonical>
            <polymorphic>AGGGCTCCTAAATGGTGTATGTCTGTGACAACAGTTTCGGTTTGACGTAGTTCGTAGACATAAAAAGTTCTAACATCTAACACCAATAAAACAACCTGAAGATGAAAGGCTCTCGAAATAATAAAATGACAAGAACAAGGGGAAAGGAGAACAGGAAGAGAGAACAATGAGCAAACAATGGAACACAACAATATTATGGGGGTGGACACAGAAAACTTAATGAGAAAATCGTACCGGAAATTTCCAGAAATAGGTTGGGTTTAGATGAATCGTGATAATAGAATAGGAATCAAAATAGAGTTAGCACTCTAATGAAATGACCTCTAACTTTGAGCTCAATTATTTCGCTTCCTGGAAAAGGTATCAAAAGGTAGTCGACTATCAAAATGTTCACTATAATATCAAAAACATTTTGTCAATTGACCACTTTTTGATATCTATTACAGAAACCGAGATATATATCCTCAAAAAGCAAGTAGAGGGGTGGGCTTCTGTTGTAKCGTTTGCGGTAACTCGAGGAAGAAAAAAATCCAAAAGTCTTTGACAAAACCAATAATTTTTGAAATTTCAGCAAAAAAAATTAAAGACATTTTTAGTCAATACCAATGTTAGAAAGAAACGCAAGCTCTCTTCCTCGTATCGCAAGATGCCTTAGACTCTAATTCCTAGGGATTAATTGAAAATAAAGACTTTTCTACTTTTATCAATTTTCACTTTCTTTTTTGGAAAATTTTTCGAACTGTGTCTCTTTGTTTCCAGTTATCAATAGAAAAAGAGCAAATGGATAAAAAAAAAGTAATGAATAAAGTACAGAAGTGATGTTTGATCAGAGGAGAAGAGACACAAAACTCATAAAATCATATGTGATGACCGGAAACTTTTTGGAGAGTGAATAAAAAATTAGGCCTAATTTTACCTTGAGAACTTTTGGTGCTTTGGATTGATTGAAAAATTCTAAAATTAGAAAGTTAATACCGTAAGGTCTGTAATAGAAGGGCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAGAGTTAGCACTCTAATGAAATG</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAAAATTATTGGTTTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>AATAGAGTTAGCACTCTAATGAAATGACCTCTAACTTTGAGCTCAATTATTTCGCTTCCTGGAAAAGGTATCAAAAGGTAGTCGACTATCAAAATGTTCACTATAATATCAAAAACATTTTGTCAATTGACCACTTTTTGATATCTATTACAGAAACCGAGATATATATCCTCAAAAAGCAAGTAGAGGGGTGGGCTTCTGTTGTATCGTTTGCGGTAACTCGAGGAAGAAAAAAATCCAAAAGTCTTTGACAAAACCAATAATTTTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>AATAGAGTTAGCACTCTAATGAAATGACCTCTAACTTTGAGCTCAATTATTTCGCTTCCTGGAAAAGGTATCAAAAGGTAGTCGACTATCAAAATGTTCACTATAATATCAAAAACATTTTGTCAATTGACCACTTTTTGATATCTATTACAGAAACCGAGATATATATCCTCAAAAAGCAAGTAGAGGGGTGGGCTTCTGTTGTAKCGTTTGCGGTAACTCGAGGAAGAAAAAAATCCAAAAGTCTTTGACAAAACCAATAATTTTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17568</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>258913</contig_pos>
        <strand></strand>
        <context>TTCGTTTTCT[C/T]TCTTTTTTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTGGAGAGCCACAACCCCACCACTTCTCTCAATTTCTTTTTCGTTTTCT</left_flank>
        <right_flank>TCTTTTTTCGTGTTTGTAGCTTGTGTGTATATGAATAAGTTTATGAAGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTAAAAATCAGAGAACCCTTCTAATACAGGAAATGCAAAATAAGAAAAAATGTAAAACCAAAAGTCTAGGTTAGGATTTCAAAATACTTGGGACCTAAAAAATTGCGTCATATGGATAGCATCGAGTAGCGCATTTGCATATATTGGAAAACAAAGAAAAAGTGATACATCAGATGTAACTTGACACCTTGAAGAAATCAATTTTCCATATAAACAAATAAGCCACGCCCCCTTTTGAAAAACCTATAAATTAAAACTCAAACAAGCTGACCCTCCTAGTCTAGAGATAAAGAGACGCAGGAAGTGAAAGGAAAGCCACAAAATGTGCGAATCATCTTTGAAATGTTCTCCTTCTCTCCCGGTGCCCACTCCCAGGCTTAGAACGTGGAGAGAGAGTGTGTGAAACGAAGAGAGTGCGCAGAGAGGGAAGAGTCATCAGAGAGCAGCTTGGAGAGCCACAACCCCACCACTTCTCTCAATTTCTTTTTCGTTTTCTCTCTTTTTTCGTGTTTGTAGCTTGTGTGTATATGAATAAGTTTATGAAGATTAGAACTCTCTCTATGAGGTCTCACTTTGTTATTTTTTTTGTAGCTGTTTTTGTTATGATTGCTTTTTTTTCTCTGTGATGGCCTAGGAATTTCTAGGTCATGGAGGGAAAACAGATATTTCAAATTTCAAACTGAAAACTTCTAGATTTTTTTTAATCTTTTTATGAACATCCGAATTTTTGATTCGAAATTTTTTAAAGTTCCTAAAACATTTAATTGAATTGTCTCCAACTTCTACAGTGATTATTTAGAATTTTTATATTTCAGTATCCGCTTCAAATTAGAAAAATATTATGTTTACCACTATTTAATTTTCACATGTTCGCAGAACTTTCTAGCTCGGAACACATGCTCAATCCACGTGGATTGCACATTCTGCCTCCAAAAATATAGATCCACATTGGCTTTGTCTGATCCTGTGACACTTTTTTCTAACCTCTCGCTTAATA</canonical>
            <polymorphic>AAGTTAAAAATCAGAGAACCCTTCTAATACAGGAAATGCAAAATAAGAAAAAATGTAAAACCAAAAGTCTAGGTTAGGATTTCAAAATACTTGGGACCTAAAAAATTGCGTCATATGGATAGCATCGAGTAGCGCATTTGCATATATTGGAAAACAAAGAAAAAGTGATACATCAGATGTAACTTGACACCTTGAAGAAATCAATTTTCCATATAAACAAATAAGCCACGCCCCCTTTTGAAAAACCTATAAATTAAAACTCAAACAAGCTGACCCTCCTAGTCTAGAGATAAAGAGACGCAGGAAGTGAAAGGAAAGCCACAAAATGTGCGAATCATCTTTGAAATGTTCTCCTTCTCTCCCGGTGCCCACTCCCAGGCTTAGAACGTGGAGAGAGAGTGTGTGAAACGAAGAGAGTGCGCAGAGAGGGAAGAGTCATCAGAGAGCAGCTTGGAGAGCCACAACCCCACCACTTCTCTCAATTTCTTTTTCGTTTTCTYTCTTTTTTCGTGTTTGTAGCTTGTGTGTATATGAATAAGTTTATGAAGATTAGAACTCTCTCTATGAGGTCTCACTTTGTTATTTTTTTTGTAGCTGTTTTTGTTATGATTGCTTTTTTTTCTCTGTGATGGCCTAGGAATTTCTAGGTCATGGAGGGAAAACAGATATTTCAAATTTCAAACTGAAAACTTCTAGATTTTTTTTAATCTTTTTATGAACATCCGAATTTTTGATTCGAAATTTTTTAAAGTTCCTAAAACATTTAATTGAATTGTCTCCAACTTCTACAGTGATTATTTAGAATTTTTATATTTCAGTATCCGCTTCAAATTAGAAAAATATTATGTTTACCACTATTTAATTTTCACATGTTCGCAGAACTTTCTAGCTCGGAACACATGCTCAATCCACGTGGATTGCACATTCTGCCTCCAAAAATATAGATCCACATTGGCTTTGTCTGATCCTGTGACACTTTTTTCTAACCTCTCGCTTAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCATCTTTGAAATGTTCTCCT</pcr_primer_p1>
		<pcr_primer_p2>AACAAAGTGAGACCTCATAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATCATCTTTGAAATGTTCTCCTTCTCTCCCGGTGCCCACTCCCAGGCTTAGAACGTGGAGAGAGAGTGTGTGAAACGAAGAGAGTGCGCAGAGAGGGAAGAGTCATCAGAGAGCAGCTTGGAGAGCCACAACCCCACCACTTCTCTCAATTTCTTTTTCGTTTTCTCTCTTTTTTCGTGTTTGTAGCTTGTGTGTATATGAATAAGTTTATGAAGATTAGAACTCTCTCTATGAGGTCTCACTTTGTT</canonical_amplicon>
		<polymorphic_amplicon>AATCATCTTTGAAATGTTCTCCTTCTCTCCCGGTGCCCACTCCCAGGCTTAGAACGTGGAGAGAGAGTGTGTGAAACGAAGAGAGTGCGCAGAGAGGGAAGAGTCATCAGAGAGCAGCTTGGAGAGCCACAACCCCACCACTTCTCTCAATTTCTTTTTCGTTTTCTYTCTTTTTTCGTGTTTGTAGCTTGTGTGTATATGAATAAGTTTATGAAGATTAGAACTCTCTCTATGAGGTCTCACTTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17569</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>320713</contig_pos>
        <strand>+</strand>
        <context>CATTTAAAAA[C/T]GTTAAAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAGACTTTTAGATTTCTTGGAGTTATGCTTACTTTGAAACATTTAAAAA</left_flank>
        <right_flank>GTTAAAAAATCTGAATATCCTTTTCATGAATTCTTCTCCAAAACTTGAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAAATTCGTTTCTCGTCATCTGTTTATCATAACCTCATCAACATAACTATCATCTCAAATTGTTCTCAATTATCTTCATCAAAATTTTAACAAATGTATTTTTAAAAATTATTTTCCATCCCCATTCGAAAAAGTAGTTTCTTTCGAAACTTTCCAATTTTTCTGATCTTAGAAAAATGCTTTCTCTCTCTTTTTGCATTTTGATTTTAGAAATCTTGAGTTCTCTTGTCCCCAAAGGAAGAGGACAAAATATAGGAAGAAGATGGATTCTTTTTTCTTTGATTTAATTGCTTTTTTCCTTTTTCTTCCCGTTTTTCCGGATTGAAGAATTTTCATTTCAATTCAGAATGTTGTGGGTTTTCAAAGTTTAGGAAAGTGTAGAGTTGAAAAATTCATATTTTGAGAATTACGAACCTTTCGAGTTTCAAGACATTGCGCTACTCCAATCGAGACTTTTAGATTTCTTGGAGTTATGCTTACTTTGAAACATTTAAAAATGTTAAAAAATCTGAATATCCTTTTCATGAATTCTTCTCCAAAACTTGAAGGAACCTCTCTCAAACTGAAATAATATCTCAAATTTCAAGAATAAGTTGTTTTGATCATAGTTGCAAGCGGGCTGGTCCAGGCGGGTGGCGGGCCGGCTGATAAATTTGTCTCTAAATCGAGATATTCAGATGGCTTTGGTACCAAATGATATATCTCGAAAGGGCCCATGACGCTTGTATCATTTCAGTCGGATTCCGGTTCGATAACATGTCGAAAAATGTGTTTTTTGTAAAGTTGGTCGAAAATTGTCATTCAAGCCCAGGTTGTGACATGTTACCGAAACGGAATTAGGTCTGAATGATATAGGCGCGATGAGCCCTGTCGAGATCTATCATTTGGTACTAAAACTGTCTGAATATCTCTTTTTAGAGACGAGTTATCAGCCGGCCCGCCACCTGCCCGGGCCGACCAACTATGGTTTTGATATCGAGTTTCTCTGGTTTTGATTT</canonical>
            <polymorphic>GGAAAATTCGTTTCTCGTCATCTGTTTATCATAACCTCATCAACATAACTATCATCTCAAATTGTTCTCAATTATCTTCATCAAAATTTTAACAAATGTATTTTTAAAAATTATTTTCCATCCCCATTCGAAAAAGTAGTTTCTTTCGAAACTTTCCAATTTTTCTGATCTTAGAAAAATGCTTTCTCTCTCTTTTTGCATTTTGATTTTAGAAATCTTGAGTTCTCTTGTCCCCAAAGGAAGAGGACAAAATATAGGAAGAAGATGGATTCTTTTTTCTTTGATTTAATTGCTTTTTTCCTTTTTCTTCCCGTTTTTCCGGATTGAAGAATTTTCATTTCAATTCAGAATGTTGTGGGTTTTCAAAGTTTAGGAAAGTGTAGAGTTGAAAAATTCATATTTTGAGAATTACGAACCTTTCGAGTTTCAAGACATTGCGCTACTCCAATCGAGACTTTTAGATTTCTTGGAGTTATGCTTACTTTGAAACATTTAAAAAYGTTAAAAAATCTGAATATCCTTTTCATGAATTCTTCTCCAAAACTTGAAGGAACCTCTCTCAAACTGAAATAATATCTCAAATTTCAAGAATAAGTTGTTTTGATCATAGTTGCAAGCGGGCTGGTCCAGGCGGGTGGCGGGCCGGCTGATAAATTTGTCTCTAAATCGAGATATTCAGATGGCTTTGGTACCAAATGATATATCTCGAAAGGGCCCATGACGCTTGTATCATTTCAGTCGGATTCCGGTTCGATAACATGTCGAAAAATGTGTTTTTTGTAAAGTTGGTCGAAAATTGTCATTCAAGCCCAGGTTGTGACATGTTACCGAAACGGAATTAGGTCTGAATGATATAGGCGCGATGAGCCCTGTCGAGATCTATCATTTGGTACTAAAACTGTCTGAATATCTCTTTTTAGAGACGAGTTATCAGCCGGCCCGCCACCTGCCCGGGCCGACCAACTATGGTTTTGATATCGAGTTTCTCTGGTTTTGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGAATTTTCATTTCAATTCAG</pcr_primer_p1>
		<pcr_primer_p2>TTATTTCAGTTTGAGAGAGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAGAATTTTCATTTCAATTCAGAATGTTGTGGGTTTTCAAAGTTTAGGAAAGTGTAGAGTTGAAAAATTCATATTTTGAGAATTACGAACCTTTCGAGTTTCAAGACATTGCGCTACTCCAATCGAGACTTTTAGATTTCTTGGAGTTATGCTTACTTTGAAACATTTAAAAATGTTAAAAAATCTGAATATCCTTTTCATGAATTCTTCTCCAAAACTTGAAGGAACCTCTCTCAAACTGAAATAA</canonical_amplicon>
		<polymorphic_amplicon>GAAGAATTTTCATTTCAATTCAGAATGTTGTGGGTTTTCAAAGTTTAGGAAAGTGTAGAGTTGAAAAATTCATATTTTGAGAATTACGAACCTTTCGAGTTTCAAGACATTGCGCTACTCCAATCGAGACTTTTAGATTTCTTGGAGTTATGCTTACTTTGAAACATTTAAAAAYGTTAAAAAATCTGAATATCCTTTTCATGAATTCTTCTCCAAAACTTGAAGGAACCTCTCTCAAACTGAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17570</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>346536</contig_pos>
        <strand>+</strand>
        <context>CTTGTCGTTG[A/G]CCGAAAAMCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTCTGACTACTCCCACAACTCCTCCGCTCACAATTCGAACTTGTCGTTG</left_flank>
        <right_flank>CCGAAAACCGGGACCAATAACGGATCCATCAGCTATGCTGGTCCCAGAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCAGACCAGACTACTCGGCTGTTGTCAAGGATGATTGTACTTATTTGGAAATCTCAGTGTCTGCGTTTATCAATGCGTACAAGGCGTCGTTGATGCAAAGGGAAAGGCCAATGTGAGTTTTTTTTTATTTTAAAGGGGGAATCCGACCAAAAATTTTTATTGCATTAAAATGTGTTAAAAGTTATCTATTCTCCGAATATTATTGCGAAAAAATTCAAAAAAAAATCCGAAATTCCCGAAAAACGGCGTTGAAAAGGAAGAAAATCCAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCAGCAGGCGCCTTTCCTACGTGGCAAATTTTCCGGAAAAATAGATGTATTACCACTAGGTTTGGTTATATTACTAATAACTCGAATACTTCTAAATAATAGGCCCTCATTTATTCCAGAAACGACATGTCTGACTACTCCCACAACTCCTCCGCTCACAATTCGAACTTGTCGTTGGCCGAAAACCGGGACCAATAACGGATCCATCAGCTATGCTGGTCCCAGAAAATGTCAGAAAACCATCAATTGTTTCAGTGGAAGCAACGCCAAGGGTGCTCAACATGATAGGACAACATCCGGTGGCACCGGTTGCCGAGGAGGTAATTTTTTGTCAAAAACTTTAGGTTTCAATACAATAGTGGATATTAATTAGATTTTAAAAAGACAAAAATAATTTCAAAACTTCATGAAACATTAAACAATTTTTTGGAAAAAATCAAGTTTCAGGAAGAAATGTCACTTCTGGATAAGAACTCAGCAAGATGATCCAGACCAAAATGCATATAGGAAATATTTAATTCTCAAAATGCCAATAATTTTCCAAAATACGGTATATATATCCCCTGCTCAAAATCTTCTCACTTCTTGTATAGTTTTTTTTCTTTTTTCTCCCAGACAGACTTCAGATCTCTTGTTCCACTCTAAAAGTCGGTTTTCCATCTTTTTCTACTTATAAAT</canonical>
            <polymorphic>GTTCAGACCAGACTACTCGGCTGTTGTCAAGGATGATTGTACTTATTTGGAAATCTCAGTGTCTGCGTTTATCAATGCGTACAAGGCGTCGTTGATGCAAAGGGAAAGGCCAATGTGAGTTTTTTTTTATTTTAAAGGGGGAATCCGACCAAAAATTTTTATTGCATTAAAATGTGTTAAAAGTTATCTATTCTCCGAATATTATTGCGAAAAAATTCAAAAAAAAATCCGAAATTCCCGAAAAACGGCGTTGAAAAGGAAGAAAATCCAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCAGCAGGCGCCTTTCCTACGTGGCAAATTTTCCGGAAAAATAGATGTATTACCACTAGGTTTGGTTATATTACTAATAACTCGAATACTTCTAAATAATAGGCCCTCATTTATTCCAGAAACGACATGTCTGACTACTCCCACAACTCCTCCGCTCACAATTCGAACTTGTCGTTGRCCGAAAACCGGGACCAATAACGGATCCATCAGCTATGCTGGTCCCAGAAAATGTCAGAAAACCATCAATTGTTTCAGTGGAAGCAACGCCAAGGGTGCTCAACATGATAGGACAACATCCGGTGGCACCGGTTGCCGAGGAGGTAATTTTTTGTCAAAAACTTTAGGTTTCAATACAATAGTGGATATTAATTAGATTTTAAAAAGACAAAAATAATTTCAAAACTTCATGAAACATTAAACAATTTTTTGGAAAAAATCAAGTTTCAGGAAGAAATGTCACTTCTGGATAAGAACTCAGCAAGATGATCCAGACCAAAATGCATATAGGAAATATTTAATTCTCAAAATGCCAATAATTTTCCAAAATACGGTATATATATCCCCTGCTCAAAATCTTCTCACTTCTTGTATAGTTTTTTTTCTTTTTTCTCCCAGACAGACTTCAGATCTCTTGTTCCACTCTAAAAGTCGGTTTTCCATCTTTTTCTACTTATAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 208 109 108 75</canonical_bands>
                <polymorphic_bands>575 208 109 108</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>468 208 108 89 75 32 20</canonical_bands>
                <polymorphic_bands>468 208 108 107 89 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAAACGACATGTCTGACTAC</pcr_primer_p1>
		<pcr_primer_p2>TCCACTATTGTATTGAAACCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAGAAACGACATGTCTGACTACTCCCACAACTCCTCCGCTCACAATTCGAACTTGTCGTTGGCCGAAAACCGGGACCAATAACGGATCCATCAGCTATGCTGGTCCCAGAAAATGTCAGAAAACCATCAATTGTTTCAGTGGAAGCAACGCCAAGGGTGCTCAACATGATAGGACAACATCCGGTGGCACCGGTTGCCGAGGAGGTAATTTTTTGTCAAAAACTTTAGGTTTCAATACAATAGTGGA</canonical_amplicon>
		<polymorphic_amplicon>CAGAAACGACATGTCTGACTACTCCCACAACTCCTCCGCTCACAATTCGAACTTGTCGTTGRCCGAAAACCGGGACCAATAACGGATCCATCAGCTATGCTGGTCCCAGAAAATGTCAGAAAACCATCAATTGTTTCAGTGGAAGCAACGCCAAGGGTGCTCAACATGATAGGACAACATCCGGTGGCACCGGTTGCCGAGGAGGTAATTTTTTGTCAAAAACTTTAGGTTTCAATACAATAGTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17572</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>346697</contig_pos>
        <strand>+</strand>
        <context>TTGTCAAAAA[A/C]TTTAGGTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GACAACATCCGGTGGCACCGGTTGCCGAGGAGGTAATTTTTTGTCAAAAA</left_flank>
        <right_flank>TTTAGGTTTCAATACAATAGTGGATATTAATTAGATTTTAAAAAGACAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCATTAAAATGTGTTAAAAGTTATCTATTCTCCGAATATTATTGCGAAAAAATTCAAAAAAAAATCCGAAATTCCCGAAAAACGGCGTTGAAAAGGAAGAAAATCCAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCAGCAGGCGCCTTTCCTACGTGGCAAATTTTCCGGAAAAATAGATGTATTACCACTAGGTTTGGTTATATTACTAATAACTCGAATACTTCTAAATAATAGGCCCTCATTTATTCCAGAAACGACATGTCTGACTACTCCCACAACTCCTCCGCTCACAATTCGAACTTGTCGTTGGCCGAAAACCGGGACCAATAACGGATCCATCAGCTATGCTGGTCCCAGAAAATGTCAGAAAACCATCAATTGTTTCAGTGGAAGCAACGCCAAGGGTGCTCAACATGATAGGACAACATCCGGTGGCACCGGTTGCCGAGGAGGTAATTTTTTGTCAAAAACTTTAGGTTTCAATACAATAGTGGATATTAATTAGATTTTAAAAAGACAAAAATAATTTCAAAACTTCATGAAACATTAAACAATTTTTTGGAAAAAATCAAGTTTCAGGAAGAAATGTCACTTCTGGATAAGAACTCAGCAAGATGATCCAGACCAAAATGCATATAGGAAATATTTAATTCTCAAAATGCCAATAATTTTCCAAAATACGGTATATATATCCCCTGCTCAAAATCTTCTCACTTCTTGTATAGTTTTTTTTCTTTTTTCTCCCAGACAGACTTCAGATCTCTTGTTCCACTCTAAAAGTCGGTTTTCCATCTTTTTCTACTTATAAATATGTTCCCGTGCCTTTTTTCAAATTTTTTGCATTTTCCAGGTCCCCCTCTATTGATTATTATGTATTGTTATTTTTTGGGTTTTATTAATAAATGATTTTTGATTTTTTAAATTCAAATTACTGGAAAACCTGTATTAGAAGGGCCCTCCGGGAGAGGCTC</canonical>
            <polymorphic>TTGCATTAAAATGTGTTAAAAGTTATCTATTCTCCGAATATTATTGCGAAAAAATTCAAAAAAAAATCCGAAATTCCCGAAAAACGGCGTTGAAAAGGAAGAAAATCCAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCAGCAGGCGCCTTTCCTACGTGGCAAATTTTCCGGAAAAATAGATGTATTACCACTAGGTTTGGTTATATTACTAATAACTCGAATACTTCTAAATAATAGGCCCTCATTTATTCCAGAAACGACATGTCTGACTACTCCCACAACTCCTCCGCTCACAATTCGAACTTGTCGTTGGCCGAAAACCGGGACCAATAACGGATCCATCAGCTATGCTGGTCCCAGAAAATGTCAGAAAACCATCAATTGTTTCAGTGGAAGCAACGCCAAGGGTGCTCAACATGATAGGACAACATCCGGTGGCACCGGTTGCCGAGGAGGTAATTTTTTGTCAAAAAMTTTAGGTTTCAATACAATAGTGGATATTAATTAGATTTTAAAAAGACAAAAATAATTTCAAAACTTCATGAAACATTAAACAATTTTTTGGAAAAAATCAAGTTTCAGGAAGAAATGTCACTTCTGGATAAGAACTCAGCAAGATGATCCAGACCAAAATGCATATAGGAAATATTTAATTCTCAAAATGCCAATAATTTTCCAAAATACGGTATATATATCCCCTGCTCAAAATCTTCTCACTTCTTGTATAGTTTTTTTTCTTTTTTCTCCCAGACAGACTTCAGATCTCTTGTTCCACTCTAAAAGTCGGTTTTCCATCTTTTTCTACTTATAAATATGTTCCCGTGCCTTTTTTCAAATTTTTTGCATTTTCCAGGTCCCCCTCTATTGATTATTATGTATTGTTATTTTTTGGGTTTTATTAATAAATGATTTTTGATTTTTTAAATTCAAATTACTGGAAAACCTGTATTAGAAGGGCCCTCCGGGAGAGGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATGTCAGAAAACCATCAAT</pcr_primer_p1>
		<pcr_primer_p2>CTGAGTTCTTATCCAGAAGTGAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAAATGTCAGAAAACCATCAATTGTTTCAGTGGAAGCAACGCCAAGGGTGCTCAACATGATAGGACAACATCCGGTGGCACCGGTTGCCGAGGAGGTAATTTTTTGTCAAAAACTTTAGGTTTCAATACAATAGTGGATATTAATTAGATTTTAAAAAGACAAAAATAATTTCAAAACTTCATGAAACATTAAACAATTTTTTGGAAAAAATCAAGTTTCAGGAAGAAATGTCACTTCTGGATAAGAACTCAG</canonical_amplicon>
		<polymorphic_amplicon>AAAATGTCAGAAAACCATCAATTGTTTCAGTGGAAGCAACGCCAAGGGTGCTCAACATGATAGGACAACATCCGGTGGCACCGGTTGCCGAGGAGGTAATTTTTTGTCAAAAAMTTTAGGTTTCAATACAATAGTGGATATTAATTAGATTTTAAAAAGACAAAAATAATTTCAAAACTTCATGAAACATTAAACAATTTTTTGGAAAAAATCAAGTTTCAGGAAGAAATGTCACTTCTGGATAAGAACTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17573</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>346722</contig_pos>
        <strand>+</strand>
        <context>CAATAGTGGA[C/T]ATTAATTAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAGGAGGTAATTTTTTGTCAAAAACTTTAGGTTTCAATACAATAGTGGA</left_flank>
        <right_flank>ATTAATTAGATTTTAAAAAGACAAAAATAATTTCAAAACTTCATGAAACA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTATTCTCCGAATATTATTGCGAAAAAATTCAAAAAAAAATCCGAAATTCCCGAAAAACGGCGTTGAAAAGGAAGAAAATCCAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCAGCAGGCGCCTTTCCTACGTGGCAAATTTTCCGGAAAAATAGATGTATTACCACTAGGTTTGGTTATATTACTAATAACTCGAATACTTCTAAATAATAGGCCCTCATTTATTCCAGAAACGACATGTCTGACTACTCCCACAACTCCTCCGCTCACAATTCGAACTTGTCGTTGGCCGAAAACCGGGACCAATAACGGATCCATCAGCTATGCTGGTCCCAGAAAATGTCAGAAAACCATCAATTGTTTCAGTGGAAGCAACGCCAAGGGTGCTCAACATGATAGGACAACATCCGGTGGCACCGGTTGCCGAGGAGGTAATTTTTTGTCAAAAACTTTAGGTTTCAATACAATAGTGGATATTAATTAGATTTTAAAAAGACAAAAATAATTTCAAAACTTCATGAAACATTAAACAATTTTTTGGAAAAAATCAAGTTTCAGGAAGAAATGTCACTTCTGGATAAGAACTCAGCAAGATGATCCAGACCAAAATGCATATAGGAAATATTTAATTCTCAAAATGCCAATAATTTTCCAAAATACGGTATATATATCCCCTGCTCAAAATCTTCTCACTTCTTGTATAGTTTTTTTTCTTTTTTCTCCCAGACAGACTTCAGATCTCTTGTTCCACTCTAAAAGTCGGTTTTCCATCTTTTTCTACTTATAAATATGTTCCCGTGCCTTTTTTCAAATTTTTTGCATTTTCCAGGTCCCCCTCTATTGATTATTATGTATTGTTATTTTTTGGGTTTTATTAATAAATGATTTTTGATTTTTTAAATTCAAATTACTGGAAAACCTGTATTAGAAGGGCCCTCCGGGAGAGGCTCGAAAAAATAGAAGGGCCCTCTCGGA</canonical>
            <polymorphic>TCTATTCTCCGAATATTATTGCGAAAAAATTCAAAAAAAAATCCGAAATTCCCGAAAAACGGCGTTGAAAAGGAAGAAAATCCAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCAGCAGGCGCCTTTCCTACGTGGCAAATTTTCCGGAAAAATAGATGTATTACCACTAGGTTTGGTTATATTACTAATAACTCGAATACTTCTAAATAATAGGCCCTCATTTATTCCAGAAACGACATGTCTGACTACTCCCACAACTCCTCCGCTCACAATTCGAACTTGTCGTTGGCCGAAAACCGGGACCAATAACGGATCCATCAGCTATGCTGGTCCCAGAAAATGTCAGAAAACCATCAATTGTTTCAGTGGAAGCAACGCCAAGGGTGCTCAACATGATAGGACAACATCCGGTGGCACCGGTTGCCGAGGAGGTAATTTTTTGTCAAAAACTTTAGGTTTCAATACAATAGTGGAYATTAATTAGATTTTAAAAAGACAAAAATAATTTCAAAACTTCATGAAACATTAAACAATTTTTTGGAAAAAATCAAGTTTCAGGAAGAAATGTCACTTCTGGATAAGAACTCAGCAAGATGATCCAGACCAAAATGCATATAGGAAATATTTAATTCTCAAAATGCCAATAATTTTCCAAAATACGGTATATATATCCCCTGCTCAAAATCTTCTCACTTCTTGTATAGTTTTTTTTCTTTTTTCTCCCAGACAGACTTCAGATCTCTTGTTCCACTCTAAAAGTCGGTTTTCCATCTTTTTCTACTTATAAATATGTTCCCGTGCCTTTTTTCAAATTTTTTGCATTTTCCAGGTCCCCCTCTATTGATTATTATGTATTGTTATTTTTTGGGTTTTATTAATAAATGATTTTTGATTTTTTAAATTCAAATTACTGGAAAACCTGTATTAGAAGGGCCCTCCGGGAGAGGCTCGAAAAAATAGAAGGGCCCTCTCGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATGTCAGAAAACCATCAAT</pcr_primer_p1>
		<pcr_primer_p2>CTGAGTTCTTATCCAGAAGTGAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAAATGTCAGAAAACCATCAATTGTTTCAGTGGAAGCAACGCCAAGGGTGCTCAACATGATAGGACAACATCCGGTGGCACCGGTTGCCGAGGAGGTAATTTTTTGTCAAAAACTTTAGGTTTCAATACAATAGTGGATATTAATTAGATTTTAAAAAGACAAAAATAATTTCAAAACTTCATGAAACATTAAACAATTTTTTGGAAAAAATCAAGTTTCAGGAAGAAATGTCACTTCTGGATAAGAACTCAG</canonical_amplicon>
		<polymorphic_amplicon>AAAATGTCAGAAAACCATCAATTGTTTCAGTGGAAGCAACGCCAAGGGTGCTCAACATGATAGGACAACATCCGGTGGCACCGGTTGCCGAGGAGGTAATTTTTTGTCAAAAACTTTAGGTTTCAATACAATAGTGGAYATTAATTAGATTTTAAAAAGACAAAAATAATTTCAAAACTTCATGAAACATTAAACAATTTTTTGGAAAAAATCAAGTTTCAGGAAGAAATGTCACTTCTGGATAAGAACTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17574</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>348493</contig_pos>
        <strand>+</strand>
        <context>TCCAAATTTC[A/C]GAATTATTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTC</left_flank>
        <right_flank>GAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATAATACTTTACTTCATAAAACGTGTATCTGAAACCGAATAATTTTACTAGCTTATTCCCCTGATTCAATTTCTGCAATTCCCCAAAAATCGCCCTTCAAATTCACAGAAAATTCCTCCGGATGTGTTTATAAAAACTACCGATTTCCCCTGAAAACCTAGAAAAAAAATAAGAAGCTCCGGCGCATCCGATTCCAATTTCCCGTCACATTTCCGAAGGAGACGGGTAGCTCCAAGTAGGAAAAAAATTGGTCAATAAATCAGTTGGTTTCGGGTGAAATGGCGGAGAAGAAAAAGTGAATGGATGGGTGACCCTAAGGTTTTGATTGTTTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATCTCATTATTTTGAGAAGGAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATCAAACGAATTACACACTTTTAATGAGTTGTTGACACCGAATTGGTCTAGTTTGCCATTTTCGCAAATTTTTACTGCTTCCCATAATCCACAATTTCCAGTTTTTTCTCATTTTTGTCATTAAGTTGTTGTCCATGACAATGTCTTGTACTATGCCAATAAACTAAAGAATTTTTTTCAGTTTCAGTAATGAGT</canonical>
            <polymorphic>AAATAATACTTTACTTCATAAAACGTGTATCTGAAACCGAATAATTTTACTAGCTTATTCCCCTGATTCAATTTCTGCAATTCCCCAAAAATCGCCCTTCAAATTCACAGAAAATTCCTCCGGATGTGTTTATAAAAACTACCGATTTCCCCTGAAAACCTAGAAAAAAAATAAGAAGCTCCGGCGCATCCGATTCCAATTTCCCGTCACATTTCCGAAGGAGACGGGTAGCTCCAAGTAGGAAAAAAATTGGTCAATAAATCAGTTGGTTTCGGGTGAAATGGCGGAGAAGAAAAAGTGAATGGATGGGTGACCCTAAGGTTTTGATTGTTTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATCTCATTATTTTGAGAAGGAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTCMGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATCAAACGAATTACACACTTTTAATGAGTTGTTGACACCGAATTGGTCTAGTTTGCCATTTTCGCAAATTTTTACTGCTTCCCATAATCCACAATTTCCAGTTTTTTCTCATTTTTGTCATTAAGTTGTTGTCCATGACAATGTCTTGTACTATGCCAATAAACTAAAGAATTTTTTTCAGTTTCAGTAATGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTAATTGGGTTGCACTG</pcr_primer_p1>
		<pcr_primer_p2>TGATGTAAATAGTATTGTTGTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>340</pcr_amplicon_size>
		<canonical_amplicon>TTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCA</canonical_amplicon>
		<polymorphic_amplicon>TTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTCMGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17575</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>348440</contig_pos>
        <strand>+</strand>
        <context>TTTTCGGAAA[C/G]TTTCTAATTG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAA</left_flank>
        <right_flank>TTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTATCAATTTTTAAACCTTTTATCTGGTAGTACTCGTATCGAATCGAGAAAAATAATACTTTACTTCATAAAACGTGTATCTGAAACCGAATAATTTTACTAGCTTATTCCCCTGATTCAATTTCTGCAATTCCCCAAAAATCGCCCTTCAAATTCACAGAAAATTCCTCCGGATGTGTTTATAAAAACTACCGATTTCCCCTGAAAACCTAGAAAAAAAATAAGAAGCTCCGGCGCATCCGATTCCAATTTCCCGTCACATTTCCGAAGGAGACGGGTAGCTCCAAGTAGGAAAAAAATTGGTCAATAAATCAGTTGGTTTCGGGTGAAATGGCGGAGAAGAAAAAGTGAATGGATGGGTGACCCTAAGGTTTTGATTGTTTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATCTCATTATTTTGAGAAGGAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATCAAACGAATTACACACTTTTAATGAGTTGTTGACACCGAATTGGTCTAGTTTGCCATTTTCGCAAATTTTTACTGCTTCCCATAATCCACAATTTCCAGTTTTTTCTCATTTTTGTCATTAAGTTGTTGTCCATGACAAT</canonical>
            <polymorphic>ATTTTATCAATTTTTAAACCTTTTATCTGGTAGTACTCGTATCGAATCGAGAAAAATAATACTTTACTTCATAAAACGTGTATCTGAAACCGAATAATTTTACTAGCTTATTCCCCTGATTCAATTTCTGCAATTCCCCAAAAATCGCCCTTCAAATTCACAGAAAATTCCTCCGGATGTGTTTATAAAAACTACCGATTTCCCCTGAAAACCTAGAAAAAAAATAAGAAGCTCCGGCGCATCCGATTCCAATTTCCCGTCACATTTCCGAAGGAGACGGGTAGCTCCAAGTAGGAAAAAAATTGGTCAATAAATCAGTTGGTTTCGGGTGAAATGGCGGAGAAGAAAAAGTGAATGGATGGGTGACCCTAAGGTTTTGATTGTTTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATCTCATTATTTTGAGAAGGAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAASTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATCAAACGAATTACACACTTTTAATGAGTTGTTGACACCGAATTGGTCTAGTTTGCCATTTTCGCAAATTTTTACTGCTTCCCATAATCCACAATTTCCAGTTTTTTCTCATTTTTGTCATTAAGTTGTTGTCCATGACAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTGGTCAATAAATCAGTTG</pcr_primer_p1>
		<pcr_primer_p2>GAAATTTGGAAGAGTTGATGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AAAATTGGTCAATAAATCAGTTGGTTTCGGGTGAAATGGCGGAGAAGAAAAAGTGAATGGATGGGTGACCCTAAGGTTTTGATTGTTTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATCTCATTATTTTGAGAAGGAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAATTGGTCAATAAATCAGTTGGTTTCGGGTGAAATGGCGGAGAAGAAAAAGTGAATGGATGGGTGACCCTAAGGTTTTGATTGTTTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATCTCATTATTTTGAGAAGGAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAASTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17576</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>348785</contig_pos>
        <strand>+</strand>
        <context>ACATCAAGAT[C/T]TTGTAGAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGAT</left_flank>
        <right_flank>TTGTAGAAGACTAATCAAACGAATTACACACTTTTAATGAGTTGTTGACA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAGTGAATGGATGGGTGACCCTAAGGTTTTGATTGTTTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATCTCATTATTTTGAGAAGGAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATCAAACGAATTACACACTTTTAATGAGTTGTTGACACCGAATTGGTCTAGTTTGCCATTTTCGCAAATTTTTACTGCTTCCCATAATCCACAATTTCCAGTTTTTTCTCATTTTTGTCATTAAGTTGTTGTCCATGACAATGTCTTGTACTATGCCAATAAACTAAAGAATTTTTTTCAGTTTCAGTAATGAGTTGATACTGTAGTTCTTGGGTGGCGTTCTATTTTAGTATTTACGGTTTTCAAATTTTTATGCTAATAAATTGAATTTCCATATTTTGAGAATGAAATTTTGAAAAATTAGTTGAATTTCTGGCAGTTTTGAGAAGGAATTTGGCAGTAATGCAGTAGTTCTAAAAATTGCGAATATCACCATAAGATTTTCGAAAAAAAATCTAGGTTAGTTTTATCTGAAACAATGGTGCTATTTATCCCATCTTTTCGGAAGATTGATCAAAAGTATCACTCACTTTTGAAAACAATAACA</canonical>
            <polymorphic>AAAAAGTGAATGGATGGGTGACCCTAAGGTTTTGATTGTTTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATCTCATTATTTTGAGAAGGAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATYTTGTAGAAGACTAATCAAACGAATTACACACTTTTAATGAGTTGTTGACACCGAATTGGTCTAGTTTGCCATTTTCGCAAATTTTTACTGCTTCCCATAATCCACAATTTCCAGTTTTTTCTCATTTTTGTCATTAAGTTGTTGTCCATGACAATGTCTTGTACTATGCCAATAAACTAAAGAATTTTTTTCAGTTTCAGTAATGAGTTGATACTGTAGTTCTTGGGTGGCGTTCTATTTTAGTATTTACGGTTTTCAAATTTTTATGCTAATAAATTGAATTTCCATATTTTGAGAATGAAATTTTGAAAAATTAGTTGAATTTCTGGCAGTTTTGAGAAGGAATTTGGCAGTAATGCAGTAGTTCTAAAAATTGCGAATATCACCATAAGATTTTCGAAAAAAAATCTAGGTTAGTTTTATCTGAAACAATGGTGCTATTTATCCCATCTTTTCGGAAGATTGATCAAAAGTATCACTCACTTTTGAAAACAATAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>468 424 72 36</canonical_bands>
                <polymorphic_bands>540 424 36</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>504 424 72</canonical_bands>
                <polymorphic_bands>576 424</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTTTCATCAACTCTTCCAAAT</pcr_primer_p1>
		<pcr_primer_p2>CGGTGTCAACAACTCATTAAA</pcr_primer_p2>
		<pcr_amplicon_size>372</pcr_amplicon_size>
		<canonical_amplicon>TATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATCAAACGAATTACACACTTTTAATGAGTTGTTGACACCG</canonical_amplicon>
		<polymorphic_amplicon>TATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATYTTGTAGAAGACTAATCAAACGAATTACACACTTTTAATGAGTTGTTGACACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17577</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>348751</contig_pos>
        <strand>+</strand>
        <context>CYAATTGTTT[C/T]GTTCGGACAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTT</left_flank>
        <right_flank>GTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCAGTTGGTTTCGGGTGAAATGGCGGAGAAGAAAAAGTGAATGGATGGGTGACCCTAAGGTTTTGATTGTTTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATCTCATTATTTTGAGAAGGAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATCAAACGAATTACACACTTTTAATGAGTTGTTGACACCGAATTGGTCTAGTTTGCCATTTTCGCAAATTTTTACTGCTTCCCATAATCCACAATTTCCAGTTTTTTCTCATTTTTGTCATTAAGTTGTTGTCCATGACAATGTCTTGTACTATGCCAATAAACTAAAGAATTTTTTTCAGTTTCAGTAATGAGTTGATACTGTAGTTCTTGGGTGGCGTTCTATTTTAGTATTTACGGTTTTCAAATTTTTATGCTAATAAATTGAATTTCCATATTTTGAGAATGAAATTTTGAAAAATTAGTTGAATTTCTGGCAGTTTTGAGAAGGAATTTGGCAGTAATGCAGTAGTTCTAAAAATTGCGAATATCACCATAAGATTTTCGAAAAAAAATCTAGGTTAGTTTTATCTGAAACAATGGTGCTATTTATCCCATCTTTTCGGAAGATTGA</canonical>
            <polymorphic>AAATCAGTTGGTTTCGGGTGAAATGGCGGAGAAGAAAAAGTGAATGGATGGGTGACCCTAAGGTTTTGATTGTTTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATCTCATTATTTTGAGAAGGAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTYGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATCAAACGAATTACACACTTTTAATGAGTTGTTGACACCGAATTGGTCTAGTTTGCCATTTTCGCAAATTTTTACTGCTTCCCATAATCCACAATTTCCAGTTTTTTCTCATTTTTGTCATTAAGTTGTTGTCCATGACAATGTCTTGTACTATGCCAATAAACTAAAGAATTTTTTTCAGTTTCAGTAATGAGTTGATACTGTAGTTCTTGGGTGGCGTTCTATTTTAGTATTTACGGTTTTCAAATTTTTATGCTAATAAATTGAATTTCCATATTTTGAGAATGAAATTTTGAAAAATTAGTTGAATTTCTGGCAGTTTTGAGAAGGAATTTGGCAGTAATGCAGTAGTTCTAAAAATTGCGAATATCACCATAAGATTTTCGAAAAAAAATCTAGGTTAGTTTTATCTGAAACAATGGTGCTATTTATCCCATCTTTTCGGAAGATTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTCATCAACTCTTCCAAAT</pcr_primer_p1>
		<pcr_primer_p2>AATTCGTTTGATTAGTCTTCTACA</pcr_primer_p2>
		<pcr_amplicon_size>344</pcr_amplicon_size>
		<canonical_amplicon>TATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATCAAACGAATT</canonical_amplicon>
		<polymorphic_amplicon>TATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTYGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATCAAACGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17578</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>348742</contig_pos>
        <strand>+</strand>
        <context>acagtATCTC[C/T]AATTGTTTYG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTC</left_flank>
        <right_flank>AATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGTCAATAAATCAGTTGGTTTCGGGTGAAATGGCGGAGAAGAAAAAGTGAATGGATGGGTGACCCTAAGGTTTTGATTGTTTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATCTCATTATTTTGAGAAGGAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATCAAACGAATTACACACTTTTAATGAGTTGTTGACACCGAATTGGTCTAGTTTGCCATTTTCGCAAATTTTTACTGCTTCCCATAATCCACAATTTCCAGTTTTTTCTCATTTTTGTCATTAAGTTGTTGTCCATGACAATGTCTTGTACTATGCCAATAAACTAAAGAATTTTTTTCAGTTTCAGTAATGAGTTGATACTGTAGTTCTTGGGTGGCGTTCTATTTTAGTATTTACGGTTTTCAAATTTTTATGCTAATAAATTGAATTTCCATATTTTGAGAATGAAATTTTGAAAAATTAGTTGAATTTCTGGCAGTTTTGAGAAGGAATTTGGCAGTAATGCAGTAGTTCTAAAAATTGCGAATATCACCATAAGATTTTCGAAAAAAAATCTAGGTTAGTTTTATCTGAAACAATGGTGCTATTTATCCCATCTTTTCG</canonical>
            <polymorphic>TTGGTCAATAAATCAGTTGGTTTCGGGTGAAATGGCGGAGAAGAAAAAGTGAATGGATGGGTGACCCTAAGGTTTTGATTGTTTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATCTCATTATTTTGAGAAGGAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCYAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATCAAACGAATTACACACTTTTAATGAGTTGTTGACACCGAATTGGTCTAGTTTGCCATTTTCGCAAATTTTTACTGCTTCCCATAATCCACAATTTCCAGTTTTTTCTCATTTTTGTCATTAAGTTGTTGTCCATGACAATGTCTTGTACTATGCCAATAAACTAAAGAATTTTTTTCAGTTTCAGTAATGAGTTGATACTGTAGTTCTTGGGTGGCGTTCTATTTTAGTATTTACGGTTTTCAAATTTTTATGCTAATAAATTGAATTTCCATATTTTGAGAATGAAATTTTGAAAAATTAGTTGAATTTCTGGCAGTTTTGAGAAGGAATTTGGCAGTAATGCAGTAGTTCTAAAAATTGCGAATATCACCATAAGATTTTCGAAAAAAAATCTAGGTTAGTTTTATCTGAAACAATGGTGCTATTTATCCCATCTTTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTCATCAACTCTTCCAAAT</pcr_primer_p1>
		<pcr_primer_p2>AATTCGTTTGATTAGTCTTCTACA</pcr_primer_p2>
		<pcr_amplicon_size>344</pcr_amplicon_size>
		<canonical_amplicon>TATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATCAAACGAATT</canonical_amplicon>
		<polymorphic_amplicon>TATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCYAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATCAAACGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17579</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>415761</contig_pos>
        <strand>+</strand>
        <context>CCTATTTCTT[G/T]TTTTTTTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTTACTGCTGCTTGCTCTATTTGGTATACTACTATAATTCCTATTTCTT</left_flank>
        <right_flank>TTTTTTTTCAGTTCTCATCTCCTTCCTCTCCACTTCGGACCTCTCCAGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAACTTTGAGCTAGTTTTTCTTGGCTGTTATGCAAGATATCAAAAATGTGTTAACAGATACAATTTTGTAAATATACTAACAAACATTTTGTTAATTGACATATGTTTGCTACCAATCAAAGAAATTGAGAAAATTGAGTAAATAATGAAAGTATAGGGTGGCCTTAAATTAGTCTTTTCGGTAATAAACCTCTCACGTGAGATGAGGCGGGTAGTACACAAGTGCGCTCTATTGAGTGGCGACATCGCAATTGTTAGATTGGAAAAAAATGTGGAGCGAGAGAGTATGGTCCTAGGACGAGACGCAGCAAACGATTCGGATCTATATTGCAGTTATTGCCGTTGTCTGACACTGTCCTACCATTTTGGTGCATCCACAAAAACCTTTGAACTGAAAAAAAAAACTCAATTACTATTATAACTTATCGGTTTCAACTACACCATATATCTTTACTGCTGCTTGCTCTATTTGGTATACTACTATAATTCCTATTTCTTGTTTTTTTTCAGTTCTCATCTCCTTCCTCTCCACTTCGGACCTCTCCAGATTTGTCAAAACTTTGAAAGATAAAGCATTCCGCCCATTGGAGTTCTCTATTATCCATGTGGATTGTTATAAGTAAGTTTTACAGATATAATCGTCTTCAATTTATTGCTACACTGTTTTGATTTTTGTTTAACTGAAATCTATAACTTTTTAGAAGTGAAACCACCGAATTCTACACTCATCTAGACCAGAAGGCATCAGAGGAGACGAATCCTATCTCTGCAGCACGTCTTCGAAAGTTACATCGTCATGTGGCACTTCTCAGGAATTCACACGATGATAAGGGGAATATGGAGGAGTTTGCAACCAAGCATGGGATGATAGTAATTTTTTTTGTCTTTCCCTTCCCCAAACCCTCTGCTTCCAGCCATCCCACACCCTGTACAAAGCCCTAATCTTATGTGATGGTCTCCAGCTTCTCAGTGACTACAAACCGCTAAGTGACAATTTGA</canonical>
            <polymorphic>CCAACTTTGAGCTAGTTTTTCTTGGCTGTTATGCAAGATATCAAAAATGTGTTAACAGATACAATTTTGTAAATATACTAACAAACATTTTGTTAATTGACATATGTTTGCTACCAATCAAAGAAATTGAGAAAATTGAGTAAATAATGAAAGTATAGGGTGGCCTTAAATTAGTCTTTTCGGTAATAAACCTCTCACGTGAGATGAGGCGGGTAGTACACAAGTGCGCTCTATTGAGTGGCGACATCGCAATTGTTAGATTGGAAAAAAATGTGGAGCGAGAGAGTATGGTCCTAGGACGAGACGCAGCAAACGATTCGGATCTATATTGCAGTTATTGCCGTTGTCTGACACTGTCCTACCATTTTGGTGCATCCACAAAAACCTTTGAACTGAAAAAAAAAACTCAATTACTATTATAACTTATCGGTTTCAACTACACCATATATCTTTACTGCTGCTTGCTCTATTTGGTATACTACTATAATTCCTATTTCTTKTTTTTTTTCAGTTCTCATCTCCTTCCTCTCCACTTCGGACCTCTCCAGATTTGTCAAAACTTTGAAAGATAAAGCATTCCGCCCATTGGAGTTCTCTATTATCCATGTGGATTGTTATAAGTAAGTTTTACAGATATAATCGTCTTCAATTTATTGCTACACTGTTTTGATTTTTGTTTAACTGAAATCTATAACTTTTTAGAAGTGAAACCACCGAATTCTACACTCATCTAGACCAGAAGGCATCAGAGGAGACGAATCCTATCTCTGCAGCACGTCTTCGAAAGTTACATCGTCATGTGGCACTTCTCAGGAATTCACACGATGATAAGGGGAATATGGAGGAGTTTGCAACCAAGCATGGGATGATAGTAATTTTTTTTGTCTTTCCCTTCCCCAAACCCTCTGCTTCCAGCCATCCCACACCCTGTACAAAGCCCTAATCTTATGTGATGGTCTCCAGCTTCTCAGTGACTACAAACCGCTAAGTGACAATTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTATCGGTTTCAACTACACC</pcr_primer_p1>
		<pcr_primer_p2>AAAACAGTGTAGCAATAAATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTTATCGGTTTCAACTACACCATATATCTTTACTGCTGCTTGCTCTATTTGGTATACTACTATAATTCCTATTTCTTGTTTTTTTTCAGTTCTCATCTCCTTCCTCTCCACTTCGGACCTCTCCAGATTTGTCAAAACTTTGAAAGATAAAGCATTCCGCCCATTGGAGTTCTCTATTATCCATGTGGATTGTTATAAGTAAGTTTTACAGATATAATCGTCTTCAATTTATTGCTACACTGTTTT</canonical_amplicon>
		<polymorphic_amplicon>ACTTATCGGTTTCAACTACACCATATATCTTTACTGCTGCTTGCTCTATTTGGTATACTACTATAATTCCTATTTCTTKTTTTTTTTCAGTTCTCATCTCCTTCCTCTCCACTTCGGACCTCTCCAGATTTGTCAAAACTTTGAAAGATAAAGCATTCCGCCCATTGGAGTTCTCTATTATCCATGTGGATTGTTATAAGTAAGTTTTACAGATATAATCGTCTTCAATTTATTGCTACACTGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17580</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>415837</contig_pos>
        <strand>+</strand>
        <context>AAGATAAAGC[A/G]TTCCGCCCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCTCCACTTCGGACCTCTCCAGATTTGTCAAAACTTTGAAAGATAAAGC</left_flank>
        <right_flank>TTCCGCCCATTGGAGTTCTCTATTATCCATGTGGATTGTTATAAGTAAGT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTAACAAACATTTTGTTAATTGACATATGTTTGCTACCAATCAAAGAAATTGAGAAAATTGAGTAAATAATGAAAGTATAGGGTGGCCTTAAATTAGTCTTTTCGGTAATAAACCTCTCACGTGAGATGAGGCGGGTAGTACACAAGTGCGCTCTATTGAGTGGCGACATCGCAATTGTTAGATTGGAAAAAAATGTGGAGCGAGAGAGTATGGTCCTAGGACGAGACGCAGCAAACGATTCGGATCTATATTGCAGTTATTGCCGTTGTCTGACACTGTCCTACCATTTTGGTGCATCCACAAAAACCTTTGAACTGAAAAAAAAAACTCAATTACTATTATAACTTATCGGTTTCAACTACACCATATATCTTTACTGCTGCTTGCTCTATTTGGTATACTACTATAATTCCTATTTCTTGTTTTTTTTCAGTTCTCATCTCCTTCCTCTCCACTTCGGACCTCTCCAGATTTGTCAAAACTTTGAAAGATAAAGCATTCCGCCCATTGGAGTTCTCTATTATCCATGTGGATTGTTATAAGTAAGTTTTACAGATATAATCGTCTTCAATTTATTGCTACACTGTTTTGATTTTTGTTTAACTGAAATCTATAACTTTTTAGAAGTGAAACCACCGAATTCTACACTCATCTAGACCAGAAGGCATCAGAGGAGACGAATCCTATCTCTGCAGCACGTCTTCGAAAGTTACATCGTCATGTGGCACTTCTCAGGAATTCACACGATGATAAGGGGAATATGGAGGAGTTTGCAACCAAGCATGGGATGATAGTAATTTTTTTTGTCTTTCCCTTCCCCAAACCCTCTGCTTCCAGCCATCCCACACCCTGTACAAAGCCCTAATCTTATGTGATGGTCTCCAGCTTCTCAGTGACTACAAACCGCTAAGTGACAATTTGACGATTGTGCAACAGCAGCCAACACTTTGGGAGCATGTGACGAATACTGAAATTCATGGATACTCGGGACCAATGTT</canonical>
            <polymorphic>ACTAACAAACATTTTGTTAATTGACATATGTTTGCTACCAATCAAAGAAATTGAGAAAATTGAGTAAATAATGAAAGTATAGGGTGGCCTTAAATTAGTCTTTTCGGTAATAAACCTCTCACGTGAGATGAGGCGGGTAGTACACAAGTGCGCTCTATTGAGTGGCGACATCGCAATTGTTAGATTGGAAAAAAATGTGGAGCGAGAGAGTATGGTCCTAGGACGAGACGCAGCAAACGATTCGGATCTATATTGCAGTTATTGCCGTTGTCTGACACTGTCCTACCATTTTGGTGCATCCACAAAAACCTTTGAACTGAAAAAAAAAACTCAATTACTATTATAACTTATCGGTTTCAACTACACCATATATCTTTACTGCTGCTTGCTCTATTTGGTATACTACTATAATTCCTATTTCTTGTTTTTTTTCAGTTCTCATCTCCTTCCTCTCCACTTCGGACCTCTCCAGATTTGTCAAAACTTTGAAAGATAAAGCRTTCCGCCCATTGGAGTTCTCTATTATCCATGTGGATTGTTATAAGTAAGTTTTACAGATATAATCGTCTTCAATTTATTGCTACACTGTTTTGATTTTTGTTTAACTGAAATCTATAACTTTTTAGAAGTGAAACCACCGAATTCTACACTCATCTAGACCAGAAGGCATCAGAGGAGACGAATCCTATCTCTGCAGCACGTCTTCGAAAGTTACATCGTCATGTGGCACTTCTCAGGAATTCACACGATGATAAGGGGAATATGGAGGAGTTTGCAACCAAGCATGGGATGATAGTAATTTTTTTTGTCTTTCCCTTCCCCAAACCCTCTGCTTCCAGCCATCCCACACCCTGTACAAAGCCCTAATCTTATGTGATGGTCTCCAGCTTCTCAGTGACTACAAACCGCTAAGTGACAATTTGACGATTGTGCAACAGCAGCCAACACTTTGGGAGCATGTGACGAATACTGAAATTCATGGATACTCGGGACCAATGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTATCGGTTTCAACTACACC</pcr_primer_p1>
		<pcr_primer_p2>AAAACAGTGTAGCAATAAATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTTATCGGTTTCAACTACACCATATATCTTTACTGCTGCTTGCTCTATTTGGTATACTACTATAATTCCTATTTCTTGTTTTTTTTCAGTTCTCATCTCCTTCCTCTCCACTTCGGACCTCTCCAGATTTGTCAAAACTTTGAAAGATAAAGCATTCCGCCCATTGGAGTTCTCTATTATCCATGTGGATTGTTATAAGTAAGTTTTACAGATATAATCGTCTTCAATTTATTGCTACACTGTTTT</canonical_amplicon>
		<polymorphic_amplicon>ACTTATCGGTTTCAACTACACCATATATCTTTACTGCTGCTTGCTCTATTTGGTATACTACTATAATTCCTATTTCTTGTTTTTTTTCAGTTCTCATCTCCTTCCTCTCCACTTCGGACCTCTCCAGATTTGTCAAAACTTTGAAAGATAAAGCRTTCCGCCCATTGGAGTTCTCTATTATCCATGTGGATTGTTATAAGTAAGTTTTACAGATATAATCGTCTTCAATTTATTGCTACACTGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17581</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>415948</contig_pos>
        <strand>+</strand>
        <context>TTTAACTGAA[A/G]TCTATRACTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATCGTCTTCAATTTATTGCTACACTGTTTTGATTTTTGTTTAACTGAA</left_flank>
        <right_flank>TCTATAACTTTTTAGAAGTGAAACCACCGAATTCTACACTCATCTAGACC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACCTCTCACGTGAGATGAGGCGGGTAGTACACAAGTGCGCTCTATTGAGTGGCGACATCGCAATTGTTAGATTGGAAAAAAATGTGGAGCGAGAGAGTATGGTCCTAGGACGAGACGCAGCAAACGATTCGGATCTATATTGCAGTTATTGCCGTTGTCTGACACTGTCCTACCATTTTGGTGCATCCACAAAAACCTTTGAACTGAAAAAAAAAACTCAATTACTATTATAACTTATCGGTTTCAACTACACCATATATCTTTACTGCTGCTTGCTCTATTTGGTATACTACTATAATTCCTATTTCTTGTTTTTTTTCAGTTCTCATCTCCTTCCTCTCCACTTCGGACCTCTCCAGATTTGTCAAAACTTTGAAAGATAAAGCATTCCGCCCATTGGAGTTCTCTATTATCCATGTGGATTGTTATAAGTAAGTTTTACAGATATAATCGTCTTCAATTTATTGCTACACTGTTTTGATTTTTGTTTAACTGAAATCTATAACTTTTTAGAAGTGAAACCACCGAATTCTACACTCATCTAGACCAGAAGGCATCAGAGGAGACGAATCCTATCTCTGCAGCACGTCTTCGAAAGTTACATCGTCATGTGGCACTTCTCAGGAATTCACACGATGATAAGGGGAATATGGAGGAGTTTGCAACCAAGCATGGGATGATAGTAATTTTTTTTGTCTTTCCCTTCCCCAAACCCTCTGCTTCCAGCCATCCCACACCCTGTACAAAGCCCTAATCTTATGTGATGGTCTCCAGCTTCTCAGTGACTACAAACCGCTAAGTGACAATTTGACGATTGTGCAACAGCAGCCAACACTTTGGGAGCATGTGACGAATACTGAAATTCATGGATACTCGGGACCAATGTTTATTGGAAGTGATGGAGTACGACTACCGTACTACGAGATGTTCATGTGGAGAGATGGGAAGACACAACACGTGGCAAGTGTAAGACCCAGAGAGTCCGAGTTTTGTGAGAA</canonical>
            <polymorphic>AAACCTCTCACGTGAGATGAGGCGGGTAGTACACAAGTGCGCTCTATTGAGTGGCGACATCGCAATTGTTAGATTGGAAAAAAATGTGGAGCGAGAGAGTATGGTCCTAGGACGAGACGCAGCAAACGATTCGGATCTATATTGCAGTTATTGCCGTTGTCTGACACTGTCCTACCATTTTGGTGCATCCACAAAAACCTTTGAACTGAAAAAAAAAACTCAATTACTATTATAACTTATCGGTTTCAACTACACCATATATCTTTACTGCTGCTTGCTCTATTTGGTATACTACTATAATTCCTATTTCTTGTTTTTTTTCAGTTCTCATCTCCTTCCTCTCCACTTCGGACCTCTCCAGATTTGTCAAAACTTTGAAAGATAAAGCATTCCGCCCATTGGAGTTCTCTATTATCCATGTGGATTGTTATAAGTAAGTTTTACAGATATAATCGTCTTCAATTTATTGCTACACTGTTTTGATTTTTGTTTAACTGAARTCTATAACTTTTTAGAAGTGAAACCACCGAATTCTACACTCATCTAGACCAGAAGGCATCAGAGGAGACGAATCCTATCTCTGCAGCACGTCTTCGAAAGTTACATCGTCATGTGGCACTTCTCAGGAATTCACACGATGATAAGGGGAATATGGAGGAGTTTGCAACCAAGCATGGGATGATAGTAATTTTTTTTGTCTTTCCCTTCCCCAAACCCTCTGCTTCCAGCCATCCCACACCCTGTACAAAGCCCTAATCTTATGTGATGGTCTCCAGCTTCTCAGTGACTACAAACCGCTAAGTGACAATTTGACGATTGTGCAACAGCAGCCAACACTTTGGGAGCATGTGACGAATACTGAAATTCATGGATACTCGGGACCAATGTTTATTGGAAGTGATGGAGTACGACTACCGTACTACGAGATGTTCATGTGGAGAGATGGGAAGACACAACACGTGGCAAGTGTAAGACCCAGAGAGTCCGAGTTTTGTGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATTATCCATGTGGATTGTTAT</pcr_primer_p1>
		<pcr_primer_p2>CTCCATATTCCCCTTATCATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTATTATCCATGTGGATTGTTATAAGTAAGTTTTACAGATATAATCGTCTTCAATTTATTGCTACACTGTTTTGATTTTTGTTTAACTGAAATCTATAACTTTTTAGAAGTGAAACCACCGAATTCTACACTCATCTAGACCAGAAGGCATCAGAGGAGACGAATCCTATCTCTGCAGCACGTCTTCGAAAGTTACATCGTCATGTGGCACTTCTCAGGAATTCACACGATGATAAGGGGAATATGGAG</canonical_amplicon>
		<polymorphic_amplicon>TCTATTATCCATGTGGATTGTTATAAGTAAGTTTTACAGATATAATCGTCTTCAATTTATTGCTACACTGTTTTGATTTTTGTTTAACTGAARTCTATAACTTTTTAGAAGTGAAACCACCGAATTCTACACTCATCTAGACCAGAAGGCATCAGAGGAGACGAATCCTATCTCTGCAGCACGTCTTCGAAAGTTACATCGTCATGTGGCACTTCTCAGGAATTCACACGATGATAAGGGGAATATGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17582</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>415954</contig_pos>
        <strand>+</strand>
        <context>TGAARTCTAT[A/G]ACTTTTTAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTCAATTTATTGCTACACTGTTTTGATTTTTGTTTAACTGAAATCTAT</left_flank>
        <right_flank>ACTTTTTAGAAGTGAAACCACCGAATTCTACACTCATCTAGACCAGAAGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCACGTGAGATGAGGCGGGTAGTACACAAGTGCGCTCTATTGAGTGGCGACATCGCAATTGTTAGATTGGAAAAAAATGTGGAGCGAGAGAGTATGGTCCTAGGACGAGACGCAGCAAACGATTCGGATCTATATTGCAGTTATTGCCGTTGTCTGACACTGTCCTACCATTTTGGTGCATCCACAAAAACCTTTGAACTGAAAAAAAAAACTCAATTACTATTATAACTTATCGGTTTCAACTACACCATATATCTTTACTGCTGCTTGCTCTATTTGGTATACTACTATAATTCCTATTTCTTGTTTTTTTTCAGTTCTCATCTCCTTCCTCTCCACTTCGGACCTCTCCAGATTTGTCAAAACTTTGAAAGATAAAGCATTCCGCCCATTGGAGTTCTCTATTATCCATGTGGATTGTTATAAGTAAGTTTTACAGATATAATCGTCTTCAATTTATTGCTACACTGTTTTGATTTTTGTTTAACTGAAATCTATAACTTTTTAGAAGTGAAACCACCGAATTCTACACTCATCTAGACCAGAAGGCATCAGAGGAGACGAATCCTATCTCTGCAGCACGTCTTCGAAAGTTACATCGTCATGTGGCACTTCTCAGGAATTCACACGATGATAAGGGGAATATGGAGGAGTTTGCAACCAAGCATGGGATGATAGTAATTTTTTTTGTCTTTCCCTTCCCCAAACCCTCTGCTTCCAGCCATCCCACACCCTGTACAAAGCCCTAATCTTATGTGATGGTCTCCAGCTTCTCAGTGACTACAAACCGCTAAGTGACAATTTGACGATTGTGCAACAGCAGCCAACACTTTGGGAGCATGTGACGAATACTGAAATTCATGGATACTCGGGACCAATGTTTATTGGAAGTGATGGAGTACGACTACCGTACTACGAGATGTTCATGTGGAGAGATGGGAAGACACAACACGTGGCAAGTGTAAGACCCAGAGAGTCCGAGTTTTGTGAGAAGGAGAA</canonical>
            <polymorphic>CTCACGTGAGATGAGGCGGGTAGTACACAAGTGCGCTCTATTGAGTGGCGACATCGCAATTGTTAGATTGGAAAAAAATGTGGAGCGAGAGAGTATGGTCCTAGGACGAGACGCAGCAAACGATTCGGATCTATATTGCAGTTATTGCCGTTGTCTGACACTGTCCTACCATTTTGGTGCATCCACAAAAACCTTTGAACTGAAAAAAAAAACTCAATTACTATTATAACTTATCGGTTTCAACTACACCATATATCTTTACTGCTGCTTGCTCTATTTGGTATACTACTATAATTCCTATTTCTTGTTTTTTTTCAGTTCTCATCTCCTTCCTCTCCACTTCGGACCTCTCCAGATTTGTCAAAACTTTGAAAGATAAAGCATTCCGCCCATTGGAGTTCTCTATTATCCATGTGGATTGTTATAAGTAAGTTTTACAGATATAATCGTCTTCAATTTATTGCTACACTGTTTTGATTTTTGTTTAACTGAAATCTATRACTTTTTAGAAGTGAAACCACCGAATTCTACACTCATCTAGACCAGAAGGCATCAGAGGAGACGAATCCTATCTCTGCAGCACGTCTTCGAAAGTTACATCGTCATGTGGCACTTCTCAGGAATTCACACGATGATAAGGGGAATATGGAGGAGTTTGCAACCAAGCATGGGATGATAGTAATTTTTTTTGTCTTTCCCTTCCCCAAACCCTCTGCTTCCAGCCATCCCACACCCTGTACAAAGCCCTAATCTTATGTGATGGTCTCCAGCTTCTCAGTGACTACAAACCGCTAAGTGACAATTTGACGATTGTGCAACAGCAGCCAACACTTTGGGAGCATGTGACGAATACTGAAATTCATGGATACTCGGGACCAATGTTTATTGGAAGTGATGGAGTACGACTACCGTACTACGAGATGTTCATGTGGAGAGATGGGAAGACACAACACGTGGCAAGTGTAAGACCCAGAGAGTCCGAGTTTTGTGAGAAGGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATTATCCATGTGGATTGTTAT</pcr_primer_p1>
		<pcr_primer_p2>CTCCATATTCCCCTTATCATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTATTATCCATGTGGATTGTTATAAGTAAGTTTTACAGATATAATCGTCTTCAATTTATTGCTACACTGTTTTGATTTTTGTTTAACTGAAATCTATAACTTTTTAGAAGTGAAACCACCGAATTCTACACTCATCTAGACCAGAAGGCATCAGAGGAGACGAATCCTATCTCTGCAGCACGTCTTCGAAAGTTACATCGTCATGTGGCACTTCTCAGGAATTCACACGATGATAAGGGGAATATGGAG</canonical_amplicon>
		<polymorphic_amplicon>TCTATTATCCATGTGGATTGTTATAAGTAAGTTTTACAGATATAATCGTCTTCAATTTATTGCTACACTGTTTTGATTTTTGTTTAACTGAAATCTATRACTTTTTAGAAGTGAAACCACCGAATTCTACACTCATCTAGACCAGAAGGCATCAGAGGAGACGAATCCTATCTCTGCAGCACGTCTTCGAAAGTTACATCGTCATGTGGCACTTCTCAGGAATTCACACGATGATAAGGGGAATATGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17583</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>416018</contig_pos>
        <strand>+</strand>
        <context>CAGAGGAGAC[A/G]AATCCTATCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAACCACCGAATTCTACACTCATCTAGACCAGAAGGCATCAGAGGAGAC</left_flank>
        <right_flank>AATCCTATCTCTGCAGCACGTCTTCGAAAGTTACATCGTCATGTGGCACT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATTGGAAAAAAATGTGGAGCGAGAGAGTATGGTCCTAGGACGAGACGCAGCAAACGATTCGGATCTATATTGCAGTTATTGCCGTTGTCTGACACTGTCCTACCATTTTGGTGCATCCACAAAAACCTTTGAACTGAAAAAAAAAACTCAATTACTATTATAACTTATCGGTTTCAACTACACCATATATCTTTACTGCTGCTTGCTCTATTTGGTATACTACTATAATTCCTATTTCTTGTTTTTTTTCAGTTCTCATCTCCTTCCTCTCCACTTCGGACCTCTCCAGATTTGTCAAAACTTTGAAAGATAAAGCATTCCGCCCATTGGAGTTCTCTATTATCCATGTGGATTGTTATAAGTAAGTTTTACAGATATAATCGTCTTCAATTTATTGCTACACTGTTTTGATTTTTGTTTAACTGAAATCTATAACTTTTTAGAAGTGAAACCACCGAATTCTACACTCATCTAGACCAGAAGGCATCAGAGGAGACGAATCCTATCTCTGCAGCACGTCTTCGAAAGTTACATCGTCATGTGGCACTTCTCAGGAATTCACACGATGATAAGGGGAATATGGAGGAGTTTGCAACCAAGCATGGGATGATAGTAATTTTTTTTGTCTTTCCCTTCCCCAAACCCTCTGCTTCCAGCCATCCCACACCCTGTACAAAGCCCTAATCTTATGTGATGGTCTCCAGCTTCTCAGTGACTACAAACCGCTAAGTGACAATTTGACGATTGTGCAACAGCAGCCAACACTTTGGGAGCATGTGACGAATACTGAAATTCATGGATACTCGGGACCAATGTTTATTGGAAGTGATGGAGTACGACTACCGTACTACGAGATGTTCATGTGGAGAGATGGGAAGACACAACACGTGGCAAGTGTAAGACCCAGAGAGTCCGAGTTTTGTGAGAAGGAGAAGATGAGCAATGAGAGCAAGAATTGTTATGTGAGTTTTTTGAACAACCTCTGTTTCAAGTTTTTG</canonical>
            <polymorphic>AGATTGGAAAAAAATGTGGAGCGAGAGAGTATGGTCCTAGGACGAGACGCAGCAAACGATTCGGATCTATATTGCAGTTATTGCCGTTGTCTGACACTGTCCTACCATTTTGGTGCATCCACAAAAACCTTTGAACTGAAAAAAAAAACTCAATTACTATTATAACTTATCGGTTTCAACTACACCATATATCTTTACTGCTGCTTGCTCTATTTGGTATACTACTATAATTCCTATTTCTTGTTTTTTTTCAGTTCTCATCTCCTTCCTCTCCACTTCGGACCTCTCCAGATTTGTCAAAACTTTGAAAGATAAAGCATTCCGCCCATTGGAGTTCTCTATTATCCATGTGGATTGTTATAAGTAAGTTTTACAGATATAATCGTCTTCAATTTATTGCTACACTGTTTTGATTTTTGTTTAACTGAAATCTATAACTTTTTAGAAGTGAAACCACCGAATTCTACACTCATCTAGACCAGAAGGCATCAGAGGAGACRAATCCTATCTCTGCAGCACGTCTTCGAAAGTTACATCGTCATGTGGCACTTCTCAGGAATTCACACGATGATAAGGGGAATATGGAGGAGTTTGCAACCAAGCATGGGATGATAGTAATTTTTTTTGTCTTTCCCTTCCCCAAACCCTCTGCTTCCAGCCATCCCACACCCTGTACAAAGCCCTAATCTTATGTGATGGTCTCCAGCTTCTCAGTGACTACAAACCGCTAAGTGACAATTTGACGATTGTGCAACAGCAGCCAACACTTTGGGAGCATGTGACGAATACTGAAATTCATGGATACTCGGGACCAATGTTTATTGGAAGTGATGGAGTACGACTACCGTACTACGAGATGTTCATGTGGAGAGATGGGAAGACACAACACGTGGCAAGTGTAAGACCCAGAGAGTCCGAGTTTTGTGAGAAGGAGAAGATGAGCAATGAGAGCAAGAATTGTTATGTGAGTTTTTTGAACAACCTCTGTTTCAAGTTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>442 411 89 58</canonical_bands>
                <polymorphic_bands>853 89 58</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 442 58</canonical_bands>
                <polymorphic_bands>942 58</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTGAAACCACCGAATTCTAC</pcr_primer_p1>
		<pcr_primer_p2>TCACATAAGATTAGGGCTTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTGAAACCACCGAATTCTACACTCATCTAGACCAGAAGGCATCAGAGGAGACGAATCCTATCTCTGCAGCACGTCTTCGAAAGTTACATCGTCATGTGGCACTTCTCAGGAATTCACACGATGATAAGGGGAATATGGAGGAGTTTGCAACCAAGCATGGGATGATAGTAATTTTTTTTGTCTTTCCCTTCCCCAAACCCTCTGCTTCCAGCCATCCCACACCCTGTACAAAGCCCTAATCTTATGTGA</canonical_amplicon>
		<polymorphic_amplicon>AGTGAAACCACCGAATTCTACACTCATCTAGACCAGAAGGCATCAGAGGAGACRAATCCTATCTCTGCAGCACGTCTTCGAAAGTTACATCGTCATGTGGCACTTCTCAGGAATTCACACGATGATAAGGGGAATATGGAGGAGTTTGCAACCAAGCATGGGATGATAGTAATTTTTTTTGTCTTTCCCTTCCCCAAACCCTCTGCTTCCAGCCATCCCACACCCTGTACAAAGCCCTAATCTTATGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17584</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>416138</contig_pos>
        <strand>+</strand>
        <context>TGATAGTAAT[C/T]TTTTTTGTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATAAGGGGAATATGGAGGAGTTTGCAACCAAGCATGGGATGATAGTAAT</left_flank>
        <right_flank>TTTTTTGTCTTTCCCTTCCCCAAACCCTCTGCTTCCAGCCATCCCACACC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAAAAACCTTTGAACTGAAAAAAAAAACTCAATTACTATTATAACTTATCGGTTTCAACTACACCATATATCTTTACTGCTGCTTGCTCTATTTGGTATACTACTATAATTCCTATTTCTTGTTTTTTTTCAGTTCTCATCTCCTTCCTCTCCACTTCGGACCTCTCCAGATTTGTCAAAACTTTGAAAGATAAAGCATTCCGCCCATTGGAGTTCTCTATTATCCATGTGGATTGTTATAAGTAAGTTTTACAGATATAATCGTCTTCAATTTATTGCTACACTGTTTTGATTTTTGTTTAACTGAAATCTATAACTTTTTAGAAGTGAAACCACCGAATTCTACACTCATCTAGACCAGAAGGCATCAGAGGAGACGAATCCTATCTCTGCAGCACGTCTTCGAAAGTTACATCGTCATGTGGCACTTCTCAGGAATTCACACGATGATAAGGGGAATATGGAGGAGTTTGCAACCAAGCATGGGATGATAGTAATTTTTTTTGTCTTTCCCTTCCCCAAACCCTCTGCTTCCAGCCATCCCACACCCTGTACAAAGCCCTAATCTTATGTGATGGTCTCCAGCTTCTCAGTGACTACAAACCGCTAAGTGACAATTTGACGATTGTGCAACAGCAGCCAACACTTTGGGAGCATGTGACGAATACTGAAATTCATGGATACTCGGGACCAATGTTTATTGGAAGTGATGGAGTACGACTACCGTACTACGAGATGTTCATGTGGAGAGATGGGAAGACACAACACGTGGCAAGTGTAAGACCCAGAGAGTCCGAGTTTTGTGAGAAGGAGAAGATGAGCAATGAGAGCAAGAATTGTTATGTGAGTTTTTTGAACAACCTCTGTTTCAAGTTTTTGAGAAGGAGAAAGCTAGAACTAAGTTTTTTGTTGAAATGTATGTTGATTTCGTAAATGATAATGACTGTAAATCTGTTTTGCATGGATATGGGAATAATTGCATAGCATTCAAAACATGGA</canonical>
            <polymorphic>ACAAAAACCTTTGAACTGAAAAAAAAAACTCAATTACTATTATAACTTATCGGTTTCAACTACACCATATATCTTTACTGCTGCTTGCTCTATTTGGTATACTACTATAATTCCTATTTCTTGTTTTTTTTCAGTTCTCATCTCCTTCCTCTCCACTTCGGACCTCTCCAGATTTGTCAAAACTTTGAAAGATAAAGCATTCCGCCCATTGGAGTTCTCTATTATCCATGTGGATTGTTATAAGTAAGTTTTACAGATATAATCGTCTTCAATTTATTGCTACACTGTTTTGATTTTTGTTTAACTGAAATCTATAACTTTTTAGAAGTGAAACCACCGAATTCTACACTCATCTAGACCAGAAGGCATCAGAGGAGACGAATCCTATCTCTGCAGCACGTCTTCGAAAGTTACATCGTCATGTGGCACTTCTCAGGAATTCACACGATGATAAGGGGAATATGGAGGAGTTTGCAACCAAGCATGGGATGATAGTAATYTTTTTTGTCTTTCCCTTCCCCAAACCCTCTGCTTCCAGCCATCCCACACCCTGTACAAAGCCCTAATCTTATGTGATGGTCTCCAGCTTCTCAGTGACTACAAACCGCTAAGTGACAATTTGACGATTGTGCAACAGCAGCCAACACTTTGGGAGCATGTGACGAATACTGAAATTCATGGATACTCGGGACCAATGTTTATTGGAAGTGATGGAGTACGACTACCGTACTACGAGATGTTCATGTGGAGAGATGGGAAGACACAACACGTGGCAAGTGTAAGACCCAGAGAGTCCGAGTTTTGTGAGAAGGAGAAGATGAGCAATGAGAGCAAGAATTGTTATGTGAGTTTTTTGAACAACCTCTGTTTCAAGTTTTTGAGAAGGAGAAAGCTAGAACTAAGTTTTTTGTTGAAATGTATGTTGATTTCGTAAATGATAATGACTGTAAATCTGTTTTGCATGGATATGGGAATAATTGCATAGCATTCAAAACATGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>163 162 140 120 98 77 69 59 56 31 25</canonical_bands>
                <polymorphic_bands>179 163 162 140 98 77 69 56 31 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAATTCTACACTCATCTAGACC</pcr_primer_p1>
		<pcr_primer_p2>TGGAGACCATCACATAAGATTAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGAATTCTACACTCATCTAGACCAGAAGGCATCAGAGGAGACGAATCCTATCTCTGCAGCACGTCTTCGAAAGTTACATCGTCATGTGGCACTTCTCAGGAATTCACACGATGATAAGGGGAATATGGAGGAGTTTGCAACCAAGCATGGGATGATAGTAATTTTTTTTGTCTTTCCCTTCCCCAAACCCTCTGCTTCCAGCCATCCCACACCCTGTACAAAGCCCTAATCTTATGTGATGGTCTCCA</canonical_amplicon>
		<polymorphic_amplicon>CGAATTCTACACTCATCTAGACCAGAAGGCATCAGAGGAGACGAATCCTATCTCTGCAGCACGTCTTCGAAAGTTACATCGTCATGTGGCACTTCTCAGGAATTCACACGATGATAAGGGGAATATGGAGGAGTTTGCAACCAAGCATGGGATGATAGTAATYTTTTTTGTCTTTCCCTTCCCCAAACCCTCTGCTTCCAGCCATCCCACACCCTGTACAAAGCCCTAATCTTATGTGATGGTCTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17585</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>416253</contig_pos>
        <strand>+</strand>
        <context>CCGCTAAGTG[A/G]CAATTTGACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCTTATGTGATGGTCTCCAGCTTCTCAGTGACTACAAACCGCTAAGTG</left_flank>
        <right_flank>CAATTTGACGATTGTGCAACAGCAGCCAACACTTTGGGAGCATGTGACGA</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCTTGTTTTTTTTCAGTTCTCATCTCCTTCCTCTCCACTTCGGACCTCTCCAGATTTGTCAAAACTTTGAAAGATAAAGCATTCCGCCCATTGGAGTTCTCTATTATCCATGTGGATTGTTATAAGTAAGTTTTACAGATATAATCGTCTTCAATTTATTGCTACACTGTTTTGATTTTTGTTTAACTGAAATCTATAACTTTTTAGAAGTGAAACCACCGAATTCTACACTCATCTAGACCAGAAGGCATCAGAGGAGACGAATCCTATCTCTGCAGCACGTCTTCGAAAGTTACATCGTCATGTGGCACTTCTCAGGAATTCACACGATGATAAGGGGAATATGGAGGAGTTTGCAACCAAGCATGGGATGATAGTAATTTTTTTTGTCTTTCCCTTCCCCAAACCCTCTGCTTCCAGCCATCCCACACCCTGTACAAAGCCCTAATCTTATGTGATGGTCTCCAGCTTCTCAGTGACTACAAACCGCTAAGTGACAATTTGACGATTGTGCAACAGCAGCCAACACTTTGGGAGCATGTGACGAATACTGAAATTCATGGATACTCGGGACCAATGTTTATTGGAAGTGATGGAGTACGACTACCGTACTACGAGATGTTCATGTGGAGAGATGGGAAGACACAACACGTGGCAAGTGTAAGACCCAGAGAGTCCGAGTTTTGTGAGAAGGAGAAGATGAGCAATGAGAGCAAGAATTGTTATGTGAGTTTTTTGAACAACCTCTGTTTCAAGTTTTTGAGAAGGAGAAAGCTAGAACTAAGTTTTTTGTTGAAATGTATGTTGATTTCGTAAATGATAATGACTGTAAATCTGTTTTGCATGGATATGGGAATAATTGCATAGCATTCAAAACATGGAGAAAATAAATAAATTTTCACAAGTTTTAGAACATTTCTCACTTACTGAATGATCATATACAGTAACTGTCGCTAAGATATAAAAAAACGTATTTTTCAGTGTATTATCGGTCACT</canonical>
            <polymorphic>ATTTCTTGTTTTTTTTCAGTTCTCATCTCCTTCCTCTCCACTTCGGACCTCTCCAGATTTGTCAAAACTTTGAAAGATAAAGCATTCCGCCCATTGGAGTTCTCTATTATCCATGTGGATTGTTATAAGTAAGTTTTACAGATATAATCGTCTTCAATTTATTGCTACACTGTTTTGATTTTTGTTTAACTGAAATCTATAACTTTTTAGAAGTGAAACCACCGAATTCTACACTCATCTAGACCAGAAGGCATCAGAGGAGACGAATCCTATCTCTGCAGCACGTCTTCGAAAGTTACATCGTCATGTGGCACTTCTCAGGAATTCACACGATGATAAGGGGAATATGGAGGAGTTTGCAACCAAGCATGGGATGATAGTAATTTTTTTTGTCTTTCCCTTCCCCAAACCCTCTGCTTCCAGCCATCCCACACCCTGTACAAAGCCCTAATCTTATGTGATGGTCTCCAGCTTCTCAGTGACTACAAACCGCTAAGTGRCAATTTGACGATTGTGCAACAGCAGCCAACACTTTGGGAGCATGTGACGAATACTGAAATTCATGGATACTCGGGACCAATGTTTATTGGAAGTGATGGAGTACGACTACCGTACTACGAGATGTTCATGTGGAGAGATGGGAAGACACAACACGTGGCAAGTGTAAGACCCAGAGAGTCCGAGTTTTGTGAGAAGGAGAAGATGAGCAATGAGAGCAAGAATTGTTATGTGAGTTTTTTGAACAACCTCTGTTTCAAGTTTTTGAGAAGGAGAAAGCTAGAACTAAGTTTTTTGTTGAAATGTATGTTGATTTCGTAAATGATAATGACTGTAAATCTGTTTTGCATGGATATGGGAATAATTGCATAGCATTCAAAACATGGAGAAAATAAATAAATTTTCACAAGTTTTAGAACATTTCTCACTTACTGAATGATCATATACAGTAACTGTCGCTAAGATATAAAAAAACGTATTTTTCAGTGTATTATCGGTCACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>403 294 184 48 47 18 6</canonical_bands>
                <polymorphic_bands>403 294 184 65 48 6</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>478 451 47 18 6</canonical_bands>
                <polymorphic_bands>478 451 65 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTGTACAAAGCCCTAATCTTAT</pcr_primer_p1>
		<pcr_primer_p2>GACTCTCTGGGTCTTACACTTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CCTGTACAAAGCCCTAATCTTATGTGATGGTCTCCAGCTTCTCAGTGACTACAAACCGCTAAGTGACAATTTGACGATTGTGCAACAGCAGCCAACACTTTGGGAGCATGTGACGAATACTGAAATTCATGGATACTCGGGACCAATGTTTATTGGAAGTGATGGAGTACGACTACCGTACTACGAGATGTTCATGTGGAGAGATGGGAAGACACAACACGTGGCAAGTGTAAGACCCAGAGAGTC</canonical_amplicon>
		<polymorphic_amplicon>CCTGTACAAAGCCCTAATCTTATGTGATGGTCTCCAGCTTCTCAGTGACTACAAACCGCTAAGTGRCAATTTGACGATTGTGCAACAGCAGCCAACACTTTGGGAGCATGTGACGAATACTGAAATTCATGGATACTCGGGACCAATGTTTATTGGAAGTGATGGAGTACGACTACCGTACTACGAGATGTTCATGTGGAGAGATGGGAAGACACAACACGTGGCAAGTGTAAGACCCAGAGAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17586</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>418874</contig_pos>
        <strand>+</strand>
        <context>GTTCAATCAA[A/G]GTGCATGGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATTTTTCTTGTTTCAGGGAATAAACTTCATTCATAACAGTTCAATCAA</left_flank>
        <right_flank>GTGCATGGCACTTTATACCTATCAAATTGTGTTGTGGATTCGTATTGGGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTAGAAATTTCACCATTTCAGCAACTCGACAAAATTGAAAAAAAAAATCACTGTCTCCATTCAACATTTTTGATAAAGTTTCTTATCCATTATATGACCATCCGAGGAACCGAACGAGGTTTTCGTTTCAATAGTTTCAAAGAAATAGTTTTGAAACCGAAAATATCTAGAAGTAGCAAAATAATTTCCAACTTAAACTATATCTAACCCCAAAAAGTTATAATAATTTCCAGCTAAAATACATGTCTCACACGAATATCAACCCTTTCACTGGAATTTGCTTCAATCAAGGATCCGAATTGATCGTGATGTGGCAATTCACAGCCAGATACTCTTTGGAGGACCTAATTTTTGGAAAAGAACAAAAGTTTGGAAGAAACTTTCAATCCACTTTTATCAAGCATATCATGCATGTGAGTTTTGATAATTTTATAAGCTTCAATTTTATTTTTCTTGTTTCAGGGAATAAACTTCATTCATAACAGTTCAATCAAGGTGCATGGCACTTTATACCTATCAAATTGTGTTGTGGATTCGTATTGGGTTGTAAAATTGACGGATTTCGGGATAAAGAATATTTTGAAAGAAAGAATGCACCATAAGGAACTGGCACCGAACTCGTCGTTTGATATAGACGCCATTCATTACAGTAAGTCATTTAAATATCAAAATTTTCTAAAATTAGGTCATTGAGAACGAGTCAAGGATCATTTTTAAGGTTTTTGAATGATACCAAACTTCAACATAACTTCTGATCCTGAAAGAATGCGATTTCTGATTTTTAAGTCATCAGTTTTTTTTCCAGAATACCTCCAACTAGCACCAGAGCACTTATCCAGCCTTCTAGAGAAACACGAGGAGCCGATGGGTACTGTAGAAGGAGACATTTATCAGTTAGCAATGGTCATATACCAGATTTTGTTCTACATGAAACCATTTGCAGAAAGACAAGAAGATATTAAAGGTAATTCAATAGAGAGGTACTACTACTCTAA</canonical>
            <polymorphic>TTTTTTTAGAAATTTCACCATTTCAGCAACTCGACAAAATTGAAAAAAAAAATCACTGTCTCCATTCAACATTTTTGATAAAGTTTCTTATCCATTATATGACCATCCGAGGAACCGAACGAGGTTTTCGTTTCAATAGTTTCAAAGAAATAGTTTTGAAACCGAAAATATCTAGAAGTAGCAAAATAATTTCCAACTTAAACTATATCTAACCCCAAAAAGTTATAATAATTTCCAGCTAAAATACATGTCTCACACGAATATCAACCCTTTCACTGGAATTTGCTTCAATCAAGGATCCGAATTGATCGTGATGTGGCAATTCACAGCCAGATACTCTTTGGAGGACCTAATTTTTGGAAAAGAACAAAAGTTTGGAAGAAACTTTCAATCCACTTTTATCAAGCATATCATGCATGTGAGTTTTGATAATTTTATAAGCTTCAATTTTATTTTTCTTGTTTCAGGGAATAAACTTCATTCATAACAGTTCAATCAARGTGCATGGCACTTTATACCTATCAAATTGTGTTGTGGATTCGTATTGGGTTGTAAAATTGACGGATTTCGGGATAAAGAATATTTTGAAAGAAAGAATGCACCATAAGGAACTGGCACCGAACTCGTCGTTTGATATAGACGCCATTCATTACAGTAAGTCATTTAAATATCAAAATTTTCTAAAATTAGGTCATTGAGAACGAGTCAAGGATCATTTTTAAGGTTTTTGAATGATACCAAACTTCAACATAACTTCTGATCCTGAAAGAATGCGATTTCTGATTTTTAAGTCATCAGTTTTTTTTCCAGAATACCTCCAACTAGCACCAGAGCACTTATCCAGCCTTCTAGAGAAACACGAGGAGCCGATGGGTACTGTAGAAGGAGACATTTATCAGTTAGCAATGGTCATATACCAGATTTTGTTCTACATGAAACCATTTGCAGAAAGACAAGAAGATATTAAAGGTAATTCAATAGAGAGGTACTACTACTCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCATGCATGTGAGTTTTGATA</pcr_primer_p1>
		<pcr_primer_p2>TTACTGTAATGAATGGCGTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATCATGCATGTGAGTTTTGATAATTTTATAAGCTTCAATTTTATTTTTCTTGTTTCAGGGAATAAACTTCATTCATAACAGTTCAATCAAGGTGCATGGCACTTTATACCTATCAAATTGTGTTGTGGATTCGTATTGGGTTGTAAAATTGACGGATTTCGGGATAAAGAATATTTTGAAAGAAAGAATGCACCATAAGGAACTGGCACCGAACTCGTCGTTTGATATAGACGCCATTCATTACAGTAA</canonical_amplicon>
		<polymorphic_amplicon>TATCATGCATGTGAGTTTTGATAATTTTATAAGCTTCAATTTTATTTTTCTTGTTTCAGGGAATAAACTTCATTCATAACAGTTCAATCAARGTGCATGGCACTTTATACCTATCAAATTGTGTTGTGGATTCGTATTGGGTTGTAAAATTGACGGATTTCGGGATAAAGAATATTTTGAAAGAAAGAATGCACCATAAGGAACTGGCACCGAACTCGTCGTTTGATATAGACGCCATTCATTACAGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17587</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>418636</contig_pos>
        <strand>+</strand>
        <context>CTCACACGAA[C/T]ATCAACCCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCCCAAAAAGTTATAATAATTTCCAGCTAAAATACATGTCTCACACGAA</left_flank>
        <right_flank>ATCAACCCTTTCACTGGAATTTGCTTCAATCAAGGATCCGAATTGATCGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTACAGTTTCAGATTTTCGTGAAAAGTTTTTGAAAAGTTTTAAAAATGTTTTTCGAGTCTTGTTTTCATACAACTATAATATTCACAATACCTAAAAATTGCAACCAACAAACTCGATTAGTTTTCAGGTATCCATAAAACGATACGTTCAACGGAGACCCATAACTTTCACTAGGCAAGAAATGGAAATGTTGAATCAGGTGAGGTGGTTAAAAATGATCAAGTCTTTTGGAGTCAGTTTTTTTAGAAATTTCACCATTTCAGCAACTCGACAAAATTGAAAAAAAAAATCACTGTCTCCATTCAACATTTTTGATAAAGTTTCTTATCCATTATATGACCATCCGAGGAACCGAACGAGGTTTTCGTTTCAATAGTTTCAAAGAAATAGTTTTGAAACCGAAAATATCTAGAAGTAGCAAAATAATTTCCAACTTAAACTATATCTAACCCCAAAAAGTTATAATAATTTCCAGCTAAAATACATGTCTCACACGAATATCAACCCTTTCACTGGAATTTGCTTCAATCAAGGATCCGAATTGATCGTGATGTGGCAATTCACAGCCAGATACTCTTTGGAGGACCTAATTTTTGGAAAAGAACAAAAGTTTGGAAGAAACTTTCAATCCACTTTTATCAAGCATATCATGCATGTGAGTTTTGATAATTTTATAAGCTTCAATTTTATTTTTCTTGTTTCAGGGAATAAACTTCATTCATAACAGTTCAATCAAGGTGCATGGCACTTTATACCTATCAAATTGTGTTGTGGATTCGTATTGGGTTGTAAAATTGACGGATTTCGGGATAAAGAATATTTTGAAAGAAAGAATGCACCATAAGGAACTGGCACCGAACTCGTCGTTTGATATAGACGCCATTCATTACAGTAAGTCATTTAAATATCAAAATTTTCTAAAATTAGGTCATTGAGAACGAGTCAAGGATCATTTTTAAGGTTTTTGAATGATACCAAACTTCAACATAACTTCTGATC</canonical>
            <polymorphic>TTACAGTTTCAGATTTTCGTGAAAAGTTTTTGAAAAGTTTTAAAAATGTTTTTCGAGTCTTGTTTTCATACAACTATAATATTCACAATACCTAAAAATTGCAACCAACAAACTCGATTAGTTTTCAGGTATCCATAAAACGATACGTTCAACGGAGACCCATAACTTTCACTAGGCAAGAAATGGAAATGTTGAATCAGGTGAGGTGGTTAAAAATGATCAAGTCTTTTGGAGTCAGTTTTTTTAGAAATTTCACCATTTCAGCAACTCGACAAAATTGAAAAAAAAAATCACTGTCTCCATTCAACATTTTTGATAAAGTTTCTTATCCATTATATGACCATCCGAGGAACCGAACGAGGTTTTCGTTTCAATAGTTTCAAAGAAATAGTTTTGAAACCGAAAATATCTAGAAGTAGCAAAATAATTTCCAACTTAAACTATATCTAACCCCAAAAAGTTATAATAATTTCCAGCTAAAATACATGTCTCACACGAAYATCAACCCTTTCACTGGAATTTGCTTCAATCAAGGATCCGAATTGATCGTGATGTGGCAATTCACAGCCAGATACTCTTTGGAGGACCTAATTTTTGGAAAAGAACAAAAGTTTGGAAGAAACTTTCAATCCACTTTTATCAAGCATATCATGCATGTGAGTTTTGATAATTTTATAAGCTTCAATTTTATTTTTCTTGTTTCAGGGAATAAACTTCATTCATAACAGTTCAATCAAGGTGCATGGCACTTTATACCTATCAAATTGTGTTGTGGATTCGTATTGGGTTGTAAAATTGACGGATTTCGGGATAAAGAATATTTTGAAAGAAAGAATGCACCATAAGGAACTGGCACCGAACTCGTCGTTTGATATAGACGCCATTCATTACAGTAAGTCATTTAAATATCAAAATTTTCTAAAATTAGGTCATTGAGAACGAGTCAAGGATCATTTTTAAGGTTTTTGAATGATACCAAACTTCAACATAACTTCTGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCGTTTCAATAGTTTCAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGTTCTTTTCCAAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTCGTTTCAATAGTTTCAAAGAAATAGTTTTGAAACCGAAAATATCTAGAAGTAGCAAAATAATTTCCAACTTAAACTATATCTAACCCCAAAAAGTTATAATAATTTCCAGCTAAAATACATGTCTCACACGAATATCAACCCTTTCACTGGAATTTGCTTCAATCAAGGATCCGAATTGATCGTGATGTGGCAATTCACAGCCAGATACTCTTTGGAGGACCTAATTTTTGGAAAAGAACAAAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTTCGTTTCAATAGTTTCAAAGAAATAGTTTTGAAACCGAAAATATCTAGAAGTAGCAAAATAATTTCCAACTTAAACTATATCTAACCCCAAAAAGTTATAATAATTTCCAGCTAAAATACATGTCTCACACGAAYATCAACCCTTTCACTGGAATTTGCTTCAATCAAGGATCCGAATTGATCGTGATGTGGCAATTCACAGCCAGATACTCTTTGGAGGACCTAATTTTTGGAAAAGAACAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17588</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>418618</contig_pos>
        <strand>+</strand>
        <context>TCCAGCTAAA[A/G]TACATGTCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAACTTAAACTATATCTAACCCCAAAAAGTTATAATAATTTCCAGCTAAA</left_flank>
        <right_flank>TACATGTCTCACACGAATATCAACCCTTTCACTGGAATTTGCTTCAATCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGATTTTCGCGAAAAATTACAGTTTCAGATTTTCGTGAAAAGTTTTTGAAAAGTTTTAAAAATGTTTTTCGAGTCTTGTTTTCATACAACTATAATATTCACAATACCTAAAAATTGCAACCAACAAACTCGATTAGTTTTCAGGTATCCATAAAACGATACGTTCAACGGAGACCCATAACTTTCACTAGGCAAGAAATGGAAATGTTGAATCAGGTGAGGTGGTTAAAAATGATCAAGTCTTTTGGAGTCAGTTTTTTTAGAAATTTCACCATTTCAGCAACTCGACAAAATTGAAAAAAAAAATCACTGTCTCCATTCAACATTTTTGATAAAGTTTCTTATCCATTATATGACCATCCGAGGAACCGAACGAGGTTTTCGTTTCAATAGTTTCAAAGAAATAGTTTTGAAACCGAAAATATCTAGAAGTAGCAAAATAATTTCCAACTTAAACTATATCTAACCCCAAAAAGTTATAATAATTTCCAGCTAAAATACATGTCTCACACGAATATCAACCCTTTCACTGGAATTTGCTTCAATCAAGGATCCGAATTGATCGTGATGTGGCAATTCACAGCCAGATACTCTTTGGAGGACCTAATTTTTGGAAAAGAACAAAAGTTTGGAAGAAACTTTCAATCCACTTTTATCAAGCATATCATGCATGTGAGTTTTGATAATTTTATAAGCTTCAATTTTATTTTTCTTGTTTCAGGGAATAAACTTCATTCATAACAGTTCAATCAAGGTGCATGGCACTTTATACCTATCAAATTGTGTTGTGGATTCGTATTGGGTTGTAAAATTGACGGATTTCGGGATAAAGAATATTTTGAAAGAAAGAATGCACCATAAGGAACTGGCACCGAACTCGTCGTTTGATATAGACGCCATTCATTACAGTAAGTCATTTAAATATCAAAATTTTCTAAAATTAGGTCATTGAGAACGAGTCAAGGATCATTTTTAAGGTTTTTGAATGATACCAAACT</canonical>
            <polymorphic>TCGGATTTTCGCGAAAAATTACAGTTTCAGATTTTCGTGAAAAGTTTTTGAAAAGTTTTAAAAATGTTTTTCGAGTCTTGTTTTCATACAACTATAATATTCACAATACCTAAAAATTGCAACCAACAAACTCGATTAGTTTTCAGGTATCCATAAAACGATACGTTCAACGGAGACCCATAACTTTCACTAGGCAAGAAATGGAAATGTTGAATCAGGTGAGGTGGTTAAAAATGATCAAGTCTTTTGGAGTCAGTTTTTTTAGAAATTTCACCATTTCAGCAACTCGACAAAATTGAAAAAAAAAATCACTGTCTCCATTCAACATTTTTGATAAAGTTTCTTATCCATTATATGACCATCCGAGGAACCGAACGAGGTTTTCGTTTCAATAGTTTCAAAGAAATAGTTTTGAAACCGAAAATATCTAGAAGTAGCAAAATAATTTCCAACTTAAACTATATCTAACCCCAAAAAGTTATAATAATTTCCAGCTAAARTACATGTCTCACACGAATATCAACCCTTTCACTGGAATTTGCTTCAATCAAGGATCCGAATTGATCGTGATGTGGCAATTCACAGCCAGATACTCTTTGGAGGACCTAATTTTTGGAAAAGAACAAAAGTTTGGAAGAAACTTTCAATCCACTTTTATCAAGCATATCATGCATGTGAGTTTTGATAATTTTATAAGCTTCAATTTTATTTTTCTTGTTTCAGGGAATAAACTTCATTCATAACAGTTCAATCAAGGTGCATGGCACTTTATACCTATCAAATTGTGTTGTGGATTCGTATTGGGTTGTAAAATTGACGGATTTCGGGATAAAGAATATTTTGAAAGAAAGAATGCACCATAAGGAACTGGCACCGAACTCGTCGTTTGATATAGACGCCATTCATTACAGTAAGTCATTTAAATATCAAAATTTTCTAAAATTAGGTCATTGAGAACGAGTCAAGGATCATTTTTAAGGTTTTTGAATGATACCAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCGTTTCAATAGTTTCAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGTTCTTTTCCAAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTCGTTTCAATAGTTTCAAAGAAATAGTTTTGAAACCGAAAATATCTAGAAGTAGCAAAATAATTTCCAACTTAAACTATATCTAACCCCAAAAAGTTATAATAATTTCCAGCTAAAATACATGTCTCACACGAATATCAACCCTTTCACTGGAATTTGCTTCAATCAAGGATCCGAATTGATCGTGATGTGGCAATTCACAGCCAGATACTCTTTGGAGGACCTAATTTTTGGAAAAGAACAAAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTTCGTTTCAATAGTTTCAAAGAAATAGTTTTGAAACCGAAAATATCTAGAAGTAGCAAAATAATTTCCAACTTAAACTATATCTAACCCCAAAAAGTTATAATAATTTCCAGCTAAARTACATGTCTCACACGAATATCAACCCTTTCACTGGAATTTGCTTCAATCAAGGATCCGAATTGATCGTGATGTGGCAATTCACAGCCAGATACTCTTTGGAGGACCTAATTTTTGGAAAAGAACAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17589</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>418594</contig_pos>
        <strand>+</strand>
        <context>TAACCCCAAA[A/G]AGTTATAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCTAGAAGTAGCAAAATAATTTCCAACTTAAACTATATCTAACCCCAAA</left_flank>
        <right_flank>AGTTATAATAATTTCCAGCTAAAATACATGTCTCACACGAATATCAACCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAGAGTTTGAAAATTCCTATTTCGGATTTTCGCGAAAAATTACAGTTTCAGATTTTCGTGAAAAGTTTTTGAAAAGTTTTAAAAATGTTTTTCGAGTCTTGTTTTCATACAACTATAATATTCACAATACCTAAAAATTGCAACCAACAAACTCGATTAGTTTTCAGGTATCCATAAAACGATACGTTCAACGGAGACCCATAACTTTCACTAGGCAAGAAATGGAAATGTTGAATCAGGTGAGGTGGTTAAAAATGATCAAGTCTTTTGGAGTCAGTTTTTTTAGAAATTTCACCATTTCAGCAACTCGACAAAATTGAAAAAAAAAATCACTGTCTCCATTCAACATTTTTGATAAAGTTTCTTATCCATTATATGACCATCCGAGGAACCGAACGAGGTTTTCGTTTCAATAGTTTCAAAGAAATAGTTTTGAAACCGAAAATATCTAGAAGTAGCAAAATAATTTCCAACTTAAACTATATCTAACCCCAAAAAGTTATAATAATTTCCAGCTAAAATACATGTCTCACACGAATATCAACCCTTTCACTGGAATTTGCTTCAATCAAGGATCCGAATTGATCGTGATGTGGCAATTCACAGCCAGATACTCTTTGGAGGACCTAATTTTTGGAAAAGAACAAAAGTTTGGAAGAAACTTTCAATCCACTTTTATCAAGCATATCATGCATGTGAGTTTTGATAATTTTATAAGCTTCAATTTTATTTTTCTTGTTTCAGGGAATAAACTTCATTCATAACAGTTCAATCAAGGTGCATGGCACTTTATACCTATCAAATTGTGTTGTGGATTCGTATTGGGTTGTAAAATTGACGGATTTCGGGATAAAGAATATTTTGAAAGAAAGAATGCACCATAAGGAACTGGCACCGAACTCGTCGTTTGATATAGACGCCATTCATTACAGTAAGTCATTTAAATATCAAAATTTTCTAAAATTAGGTCATTGAGAACGAGTCAAGGATCATTTTT</canonical>
            <polymorphic>TTGAAGAGTTTGAAAATTCCTATTTCGGATTTTCGCGAAAAATTACAGTTTCAGATTTTCGTGAAAAGTTTTTGAAAAGTTTTAAAAATGTTTTTCGAGTCTTGTTTTCATACAACTATAATATTCACAATACCTAAAAATTGCAACCAACAAACTCGATTAGTTTTCAGGTATCCATAAAACGATACGTTCAACGGAGACCCATAACTTTCACTAGGCAAGAAATGGAAATGTTGAATCAGGTGAGGTGGTTAAAAATGATCAAGTCTTTTGGAGTCAGTTTTTTTAGAAATTTCACCATTTCAGCAACTCGACAAAATTGAAAAAAAAAATCACTGTCTCCATTCAACATTTTTGATAAAGTTTCTTATCCATTATATGACCATCCGAGGAACCGAACGAGGTTTTCGTTTCAATAGTTTCAAAGAAATAGTTTTGAAACCGAAAATATCTAGAAGTAGCAAAATAATTTCCAACTTAAACTATATCTAACCCCAAARAGTTATAATAATTTCCAGCTAAAATACATGTCTCACACGAATATCAACCCTTTCACTGGAATTTGCTTCAATCAAGGATCCGAATTGATCGTGATGTGGCAATTCACAGCCAGATACTCTTTGGAGGACCTAATTTTTGGAAAAGAACAAAAGTTTGGAAGAAACTTTCAATCCACTTTTATCAAGCATATCATGCATGTGAGTTTTGATAATTTTATAAGCTTCAATTTTATTTTTCTTGTTTCAGGGAATAAACTTCATTCATAACAGTTCAATCAAGGTGCATGGCACTTTATACCTATCAAATTGTGTTGTGGATTCGTATTGGGTTGTAAAATTGACGGATTTCGGGATAAAGAATATTTTGAAAGAAAGAATGCACCATAAGGAACTGGCACCGAACTCGTCGTTTGATATAGACGCCATTCATTACAGTAAGTCATTTAAATATCAAAATTTTCTAAAATTAGGTCATTGAGAACGAGTCAAGGATCATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCGTTTCAATAGTTTCAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGTTCTTTTCCAAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTCGTTTCAATAGTTTCAAAGAAATAGTTTTGAAACCGAAAATATCTAGAAGTAGCAAAATAATTTCCAACTTAAACTATATCTAACCCCAAAAAGTTATAATAATTTCCAGCTAAAATACATGTCTCACACGAATATCAACCCTTTCACTGGAATTTGCTTCAATCAAGGATCCGAATTGATCGTGATGTGGCAATTCACAGCCAGATACTCTTTGGAGGACCTAATTTTTGGAAAAGAACAAAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTTCGTTTCAATAGTTTCAAAGAAATAGTTTTGAAACCGAAAATATCTAGAAGTAGCAAAATAATTTCCAACTTAAACTATATCTAACCCCAAARAGTTATAATAATTTCCAGCTAAAATACATGTCTCACACGAATATCAACCCTTTCACTGGAATTTGCTTCAATCAAGGATCCGAATTGATCGTGATGTGGCAATTCACAGCCAGATACTCTTTGGAGGACCTAATTTTTGGAAAAGAACAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17590</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>418480</contig_pos>
        <strand>+</strand>
        <context>TATATGACCA[C/T]CCGAGGAACC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGTCTCCATTCAACATTTTTGATAAAGTTTCTTATCCATTATATGACCA</left_flank>
        <right_flank>CCGAGGAACCGAACGAGGTTTTCGTTTCAATAGTTTCAAAGAAATAGTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTATTACAGGGAACCCTTCTATATTTCCAAGCGCCTTCGGAGGGCCCTTTTATTAGAGGTGCTCTTCTATTAAAGGAGCCCTGTTAATACAGGTTTTTACGGTATTATATTCTTGAAGAGTTTGAAAATTCCTATTTCGGATTTTCGCGAAAAATTACAGTTTCAGATTTTCGTGAAAAGTTTTTGAAAAGTTTTAAAAATGTTTTTCGAGTCTTGTTTTCATACAACTATAATATTCACAATACCTAAAAATTGCAACCAACAAACTCGATTAGTTTTCAGGTATCCATAAAACGATACGTTCAACGGAGACCCATAACTTTCACTAGGCAAGAAATGGAAATGTTGAATCAGGTGAGGTGGTTAAAAATGATCAAGTCTTTTGGAGTCAGTTTTTTTAGAAATTTCACCATTTCAGCAACTCGACAAAATTGAAAAAAAAAATCACTGTCTCCATTCAACATTTTTGATAAAGTTTCTTATCCATTATATGACCATCCGAGGAACCGAACGAGGTTTTCGTTTCAATAGTTTCAAAGAAATAGTTTTGAAACCGAAAATATCTAGAAGTAGCAAAATAATTTCCAACTTAAACTATATCTAACCCCAAAAAGTTATAATAATTTCCAGCTAAAATACATGTCTCACACGAATATCAACCCTTTCACTGGAATTTGCTTCAATCAAGGATCCGAATTGATCGTGATGTGGCAATTCACAGCCAGATACTCTTTGGAGGACCTAATTTTTGGAAAAGAACAAAAGTTTGGAAGAAACTTTCAATCCACTTTTATCAAGCATATCATGCATGTGAGTTTTGATAATTTTATAAGCTTCAATTTTATTTTTCTTGTTTCAGGGAATAAACTTCATTCATAACAGTTCAATCAAGGTGCATGGCACTTTATACCTATCAAATTGTGTTGTGGATTCGTATTGGGTTGTAAAATTGACGGATTTCGGGATAAAGAATATTTTGAAAGAAAGAATGCACCATA</canonical>
            <polymorphic>TTCTATTACAGGGAACCCTTCTATATTTCCAAGCGCCTTCGGAGGGCCCTTTTATTAGAGGTGCTCTTCTATTAAAGGAGCCCTGTTAATACAGGTTTTTACGGTATTATATTCTTGAAGAGTTTGAAAATTCCTATTTCGGATTTTCGCGAAAAATTACAGTTTCAGATTTTCGTGAAAAGTTTTTGAAAAGTTTTAAAAATGTTTTTCGAGTCTTGTTTTCATACAACTATAATATTCACAATACCTAAAAATTGCAACCAACAAACTCGATTAGTTTTCAGGTATCCATAAAACGATACGTTCAACGGAGACCCATAACTTTCACTAGGCAAGAAATGGAAATGTTGAATCAGGTGAGGTGGTTAAAAATGATCAAGTCTTTTGGAGTCAGTTTTTTTAGAAATTTCACCATTTCAGCAACTCGACAAAATTGAAAAAAAAAATCACTGTCTCCATTCAACATTTTTGATAAAGTTTCTTATCCATTATATGACCAYCCGAGGAACCGAACGAGGTTTTCGTTTCAATAGTTTCAAAGAAATAGTTTTGAAACCGAAAATATCTAGAAGTAGCAAAATAATTTCCAACTTAAACTATATCTAACCCCAAAAAGTTATAATAATTTCCAGCTAAAATACATGTCTCACACGAATATCAACCCTTTCACTGGAATTTGCTTCAATCAAGGATCCGAATTGATCGTGATGTGGCAATTCACAGCCAGATACTCTTTGGAGGACCTAATTTTTGGAAAAGAACAAAAGTTTGGAAGAAACTTTCAATCCACTTTTATCAAGCATATCATGCATGTGAGTTTTGATAATTTTATAAGCTTCAATTTTATTTTTCTTGTTTCAGGGAATAAACTTCATTCATAACAGTTCAATCAAGGTGCATGGCACTTTATACCTATCAAATTGTGTTGTGGATTCGTATTGGGTTGTAAAATTGACGGATTTCGGGATAAAGAATATTTTGAAAGAAAGAATGCACCATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>335 305 193 100 41 26</canonical_bands>
                <polymorphic_bands>528 305 100 41 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAACTTTCACTAGGCAAGAAATG</pcr_primer_p1>
		<pcr_primer_p2>CTTCTAGATATTTTCGGTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TAACTTTCACTAGGCAAGAAATGGAAATGTTGAATCAGGTGAGGTGGTTAAAAATGATCAAGTCTTTTGGAGTCAGTTTTTTTAGAAATTTCACCATTTCAGCAACTCGACAAAATTGAAAAAAAAAATCACTGTCTCCATTCAACATTTTTGATAAAGTTTCTTATCCATTATATGACCATCCGAGGAACCGAACGAGGTTTTCGTTTCAATAGTTTCAAAGAAATAGTTTTGAAACCGAAAATATCTAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TAACTTTCACTAGGCAAGAAATGGAAATGTTGAATCAGGTGAGGTGGTTAAAAATGATCAAGTCTTTTGGAGTCAGTTTTTTTAGAAATTTCACCATTTCAGCAACTCGACAAAATTGAAAAAAAAAATCACTGTCTCCATTCAACATTTTTGATAAAGTTTCTTATCCATTATATGACCAYCCGAGGAACCGAACGAGGTTTTCGTTTCAATAGTTTCAAAGAAATAGTTTTGAAACCGAAAATATCTAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17591</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>418409</contig_pos>
        <strand>+</strand>
        <context>AGCAACTCGA[A/C]AAAATTGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTCTTTTGGAGTCAGTTTTTTTAGAAATTTCACCATTTCAGCAACTCGA</left_flank>
        <right_flank>AAAATTGAAAAAAAAAATCACTGTCTCCATTCAACATTTTTGATAAAGTT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGATTTCCAAACACATTTCGAAGGGGGTGGGGTTCTTTTTCACAGAGGGCCTTTCTAATACGGGGGCCTTTCTATTACAGGGAACCCTTCTATATTTCCAAGCGCCTTCGGAGGGCCCTTTTATTAGAGGTGCTCTTCTATTAAAGGAGCCCTGTTAATACAGGTTTTTACGGTATTATATTCTTGAAGAGTTTGAAAATTCCTATTTCGGATTTTCGCGAAAAATTACAGTTTCAGATTTTCGTGAAAAGTTTTTGAAAAGTTTTAAAAATGTTTTTCGAGTCTTGTTTTCATACAACTATAATATTCACAATACCTAAAAATTGCAACCAACAAACTCGATTAGTTTTCAGGTATCCATAAAACGATACGTTCAACGGAGACCCATAACTTTCACTAGGCAAGAAATGGAAATGTTGAATCAGGTGAGGTGGTTAAAAATGATCAAGTCTTTTGGAGTCAGTTTTTTTAGAAATTTCACCATTTCAGCAACTCGACAAAATTGAAAAAAAAAATCACTGTCTCCATTCAACATTTTTGATAAAGTTTCTTATCCATTATATGACCATCCGAGGAACCGAACGAGGTTTTCGTTTCAATAGTTTCAAAGAAATAGTTTTGAAACCGAAAATATCTAGAAGTAGCAAAATAATTTCCAACTTAAACTATATCTAACCCCAAAAAGTTATAATAATTTCCAGCTAAAATACATGTCTCACACGAATATCAACCCTTTCACTGGAATTTGCTTCAATCAAGGATCCGAATTGATCGTGATGTGGCAATTCACAGCCAGATACTCTTTGGAGGACCTAATTTTTGGAAAAGAACAAAAGTTTGGAAGAAACTTTCAATCCACTTTTATCAAGCATATCATGCATGTGAGTTTTGATAATTTTATAAGCTTCAATTTTATTTTTCTTGTTTCAGGGAATAAACTTCATTCATAACAGTTCAATCAAGGTGCATGGCACTTTATACCTATCAAATTGTGTTGT</canonical>
            <polymorphic>TCTGATTTCCAAACACATTTCGAAGGGGGTGGGGTTCTTTTTCACAGAGGGCCTTTCTAATACGGGGGCCTTTCTATTACAGGGAACCCTTCTATATTTCCAAGCGCCTTCGGAGGGCCCTTTTATTAGAGGTGCTCTTCTATTAAAGGAGCCCTGTTAATACAGGTTTTTACGGTATTATATTCTTGAAGAGTTTGAAAATTCCTATTTCGGATTTTCGCGAAAAATTACAGTTTCAGATTTTCGTGAAAAGTTTTTGAAAAGTTTTAAAAATGTTTTTCGAGTCTTGTTTTCATACAACTATAATATTCACAATACCTAAAAATTGCAACCAACAAACTCGATTAGTTTTCAGGTATCCATAAAACGATACGTTCAACGGAGACCCATAACTTTCACTAGGCAAGAAATGGAAATGTTGAATCAGGTGAGGTGGTTAAAAATGATCAAGTCTTTTGGAGTCAGTTTTTTTAGAAATTTCACCATTTCAGCAACTCGAMAAAATTGAAAAAAAAAATCACTGTCTCCATTCAACATTTTTGATAAAGTTTCTTATCCATTATATGACCATCCGAGGAACCGAACGAGGTTTTCGTTTCAATAGTTTCAAAGAAATAGTTTTGAAACCGAAAATATCTAGAAGTAGCAAAATAATTTCCAACTTAAACTATATCTAACCCCAAAAAGTTATAATAATTTCCAGCTAAAATACATGTCTCACACGAATATCAACCCTTTCACTGGAATTTGCTTCAATCAAGGATCCGAATTGATCGTGATGTGGCAATTCACAGCCAGATACTCTTTGGAGGACCTAATTTTTGGAAAAGAACAAAAGTTTGGAAGAAACTTTCAATCCACTTTTATCAAGCATATCATGCATGTGAGTTTTGATAATTTTATAAGCTTCAATTTTATTTTTCTTGTTTCAGGGAATAAACTTCATTCATAACAGTTCAATCAAGGTGCATGGCACTTTATACCTATCAAATTGTGTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACTTTCACTAGGCAAGAAATG</pcr_primer_p1>
		<pcr_primer_p2>CTTCTAGATATTTTCGGTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TAACTTTCACTAGGCAAGAAATGGAAATGTTGAATCAGGTGAGGTGGTTAAAAATGATCAAGTCTTTTGGAGTCAGTTTTTTTAGAAATTTCACCATTTCAGCAACTCGACAAAATTGAAAAAAAAAATCACTGTCTCCATTCAACATTTTTGATAAAGTTTCTTATCCATTATATGACCATCCGAGGAACCGAACGAGGTTTTCGTTTCAATAGTTTCAAAGAAATAGTTTTGAAACCGAAAATATCTAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TAACTTTCACTAGGCAAGAAATGGAAATGTTGAATCAGGTGAGGTGGTTAAAAATGATCAAGTCTTTTGGAGTCAGTTTTTTTAGAAATTTCACCATTTCAGCAACTCGAMAAAATTGAAAAAAAAAATCACTGTCTCCATTCAACATTTTTGATAAAGTTTCTTATCCATTATATGACCATCCGAGGAACCGAACGAGGTTTTCGTTTCAATAGTTTCAAAGAAATAGTTTTGAAACCGAAAATATCTAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17592</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>418392</contig_pos>
        <strand>+</strand>
        <context>RGAAATTTCA[C/T]CATTTCAGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGGTTAAAAATGATCAAGTCTTTTGGAGTCAGTTTTTTTAGAAATTTCA</left_flank>
        <right_flank>CATTTCAGCAACTCGACAAAATTGAAAAAAAAAATCACTGTCTCCATTCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAACACGGAAATTTTCTGATTTCCAAACACATTTCGAAGGGGGTGGGGTTCTTTTTCACAGAGGGCCTTTCTAATACGGGGGCCTTTCTATTACAGGGAACCCTTCTATATTTCCAAGCGCCTTCGGAGGGCCCTTTTATTAGAGGTGCTCTTCTATTAAAGGAGCCCTGTTAATACAGGTTTTTACGGTATTATATTCTTGAAGAGTTTGAAAATTCCTATTTCGGATTTTCGCGAAAAATTACAGTTTCAGATTTTCGTGAAAAGTTTTTGAAAAGTTTTAAAAATGTTTTTCGAGTCTTGTTTTCATACAACTATAATATTCACAATACCTAAAAATTGCAACCAACAAACTCGATTAGTTTTCAGGTATCCATAAAACGATACGTTCAACGGAGACCCATAACTTTCACTAGGCAAGAAATGGAAATGTTGAATCAGGTGAGGTGGTTAAAAATGATCAAGTCTTTTGGAGTCAGTTTTTTTAGAAATTTCACCATTTCAGCAACTCGACAAAATTGAAAAAAAAAATCACTGTCTCCATTCAACATTTTTGATAAAGTTTCTTATCCATTATATGACCATCCGAGGAACCGAACGAGGTTTTCGTTTCAATAGTTTCAAAGAAATAGTTTTGAAACCGAAAATATCTAGAAGTAGCAAAATAATTTCCAACTTAAACTATATCTAACCCCAAAAAGTTATAATAATTTCCAGCTAAAATACATGTCTCACACGAATATCAACCCTTTCACTGGAATTTGCTTCAATCAAGGATCCGAATTGATCGTGATGTGGCAATTCACAGCCAGATACTCTTTGGAGGACCTAATTTTTGGAAAAGAACAAAAGTTTGGAAGAAACTTTCAATCCACTTTTATCAAGCATATCATGCATGTGAGTTTTGATAATTTTATAAGCTTCAATTTTATTTTTCTTGTTTCAGGGAATAAACTTCATTCATAACAGTTCAATCAAGGTGCATGGCACTTTATAC</canonical>
            <polymorphic>AAAAAACACGGAAATTTTCTGATTTCCAAACACATTTCGAAGGGGGTGGGGTTCTTTTTCACAGAGGGCCTTTCTAATACGGGGGCCTTTCTATTACAGGGAACCCTTCTATATTTCCAAGCGCCTTCGGAGGGCCCTTTTATTAGAGGTGCTCTTCTATTAAAGGAGCCCTGTTAATACAGGTTTTTACGGTATTATATTCTTGAAGAGTTTGAAAATTCCTATTTCGGATTTTCGCGAAAAATTACAGTTTCAGATTTTCGTGAAAAGTTTTTGAAAAGTTTTAAAAATGTTTTTCGAGTCTTGTTTTCATACAACTATAATATTCACAATACCTAAAAATTGCAACCAACAAACTCGATTAGTTTTCAGGTATCCATAAAACGATACGTTCAACGGAGACCCATAACTTTCACTAGGCAAGAAATGGAAATGTTGAATCAGGTGAGGTGGTTAAAAATGATCAAGTCTTTTGGAGTCAGTTTTTTTAGAAATTTCAYCATTTCAGCAACTCGACAAAATTGAAAAAAAAAATCACTGTCTCCATTCAACATTTTTGATAAAGTTTCTTATCCATTATATGACCATCCGAGGAACCGAACGAGGTTTTCGTTTCAATAGTTTCAAAGAAATAGTTTTGAAACCGAAAATATCTAGAAGTAGCAAAATAATTTCCAACTTAAACTATATCTAACCCCAAAAAGTTATAATAATTTCCAGCTAAAATACATGTCTCACACGAATATCAACCCTTTCACTGGAATTTGCTTCAATCAAGGATCCGAATTGATCGTGATGTGGCAATTCACAGCCAGATACTCTTTGGAGGACCTAATTTTTGGAAAAGAACAAAAGTTTGGAAGAAACTTTCAATCCACTTTTATCAAGCATATCATGCATGTGAGTTTTGATAATTTTATAAGCTTCAATTTTATTTTTCTTGTTTCAGGGAATAAACTTCATTCATAACAGTTCAATCAAGGTGCATGGCACTTTATAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>200 114 90 86 82 69 64 47 38 38 32 26 24 18 16 13 8 8 8 7 5 5 2</canonical_bands>
                <polymorphic_bands>200 114 90 86 85 82 69 64 38 32 26 24 18 16 13 8 8 8 7 5 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAACTTTCACTAGGCAAGAAATG</pcr_primer_p1>
		<pcr_primer_p2>CTTCTAGATATTTTCGGTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TAACTTTCACTAGGCAAGAAATGGAAATGTTGAATCAGGTGAGGTGGTTAAAAATGATCAAGTCTTTTGGAGTCAGTTTTTTTAGAAATTTCACCATTTCAGCAACTCGACAAAATTGAAAAAAAAAATCACTGTCTCCATTCAACATTTTTGATAAAGTTTCTTATCCATTATATGACCATCCGAGGAACCGAACGAGGTTTTCGTTTCAATAGTTTCAAAGAAATAGTTTTGAAACCGAAAATATCTAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TAACTTTCACTAGGCAAGAAATGGAAATGTTGAATCAGGTGAGGTGGTTAAAAATGATCAAGTCTTTTGGAGTCAGTTTTTTTAGAAATTTCAYCATTTCAGCAACTCGACAAAATTGAAAAAAAAAATCACTGTCTCCATTCAACATTTTTGATAAAGTTTCTTATCCATTATATGACCATCCGAGGAACCGAACGAGGTTTTCGTTTCAATAGTTTCAAAGAAATAGTTTTGAAACCGAAAATATCTAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17593</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>489334</contig_pos>
        <strand>+</strand>
        <context>CTGTCAAGCT[A/G]CTGTAGTWCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTCGATGGTTACTATAGTTCCAGTGTATTACTGTAGTACTGTCAAGCT</left_flank>
        <right_flank>CTGTAGTTCAATATAGTTACTGTATTGCGGTGGTTACTGTAGTTCCAGTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTACAGTAATCATATATGCTATCCAGCTCACCTAGTTATCCTAGACAACGCTAGAAAAGCAACAGAATATCAGTAAATAATCAAGAAATTTCAACTAGCAAGCAAGAAGTTTTGTTGTTTACTGCCACCAACAGCAAAGTAGTAGCAGAACTGAAACTGCGAGGCAACATCTCTCGGCGCCAGCTCTCTTAAAAGCAGAAAAAGCAAAAACGAGAGTAATAATCAATGGATCTCCTGCCCCGCGACGTCTGCGGCGTTTATTGGAAAGCGCGGCGCTGATGTTTGCTAGTTTCAGCTACATCATTGTTTATGTTCTGTGGTTTGTGTTGATCATAGACATCCTTGGAAGATAGGGTATAGTGAAAGGGTACGGTAGGACAGGTGATCAGAATACTTATGAATCACCGATGACTCTGAAAAAGAGAGAAGGGCGTGAATATAGAGATGTATTTCGATGGTTACTATAGTTCCAGTGTATTACTGTAGTACTGTCAAGCTACTGTAGTTCAATATAGTTACTGTATTGCGGTGGTTACTGTAGTTCCAGTGTATTATTATAATACAATGTAGTTACTGTGTATTACGGCGGTTACTGTGGTTCCAGTGAATTACTGTAGAATAGTGCAGTTACTGTATTCCGGCGGCTGTTGTAGTTCCAGCTTATTATTGTAGTACAGTGTGGTTACTGTACTACGGTGGTTACTGTAGTACAGCGTCGTTACTGTGTATTATTGTAGTTACTGTAGTTACTGTATTAAAAGGGTTTCAAAGATGATCTAGCCATTTTTATACCTTAAACACTTCAACATAAAGACCCTCCCACTTCTAACAGAACAATTTCGGATCTGTGTCTTGAAAAATGGAATCCCAGCCTCTAATTGACTGCCATCTAATAGAAGGCTACTCCAGCTGTGGATTGAATTTACAGTGCCATGATATTAGTTTAGAGAGCTCACGGTAAATTAGGATATATTCACATGTGCTTTAATGAGAGGGTGA</canonical>
            <polymorphic>CTTACAGTAATCATATATGCTATCCAGCTCACCTAGTTATCCTAGACAACGCTAGAAAAGCAACAGAATATCAGTAAATAATCAAGAAATTTCAACTAGCAAGCAAGAAGTTTTGTTGTTTACTGCCACCAACAGCAAAGTAGTAGCAGAACTGAAACTGCGAGGCAACATCTCTCGGCGCCAGCTCTCTTAAAAGCAGAAAAAGCAAAAACGAGAGTAATAATCAATGGATCTCCTGCCCCGCGACGTCTGCGGCGTTTATTGGAAAGCGCGGCGCTGATGTTTGCTAGTTTCAGCTACATCATTGTTTATGTTCTGTGGTTTGTGTTGATCATAGACATCCTTGGAAGATAGGGTATAGTGAAAGGGTACGGTAGGACAGGTGATCAGAATACTTATGAATCACCGATGACTCTGAAAAAGAGAGAAGGGCGTGAATATAGAGATGTATTTCGATGGTTACTATAGTTCCAGTGTATTACTGTAGTACTGTCAAGCTRCTGTAGTTCAATATAGTTACTGTATTGCGGTGGTTACTGTAGTTCCAGTGTATTATTATAATACAATGTAGTTACTGTGTATTACGGCGGTTACTGTGGTTCCAGTGAATTACTGTAGAATAGTGCAGTTACTGTATTCCGGCGGCTGTTGTAGTTCCAGCTTATTATTGTAGTACAGTGTGGTTACTGTACTACGGTGGTTACTGTAGTACAGCGTCGTTACTGTGTATTATTGTAGTTACTGTAGTTACTGTATTAAAAGGGTTTCAAAGATGATCTAGCCATTTTTATACCTTAAACACTTCAACATAAAGACCCTCCCACTTCTAACAGAACAATTTCGGATCTGTGTCTTGAAAAATGGAATCCCAGCCTCTAATTGACTGCCATCTAATAGAAGGCTACTCCAGCTGTGGATTGAATTTACAGTGCCATGATATTAGTTTAGAGAGCTCACGGTAAATTAGGATATATTCACATGTGCTTTAATGAGAGGGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>367 176 110 44 42 38 30 19 19 19 19 19 19 17 11 11 9 9 8 8 6</canonical_bands>
                <polymorphic_bands>367 176 110 44 42 38 30 30 19 19 19 19 19 17 11 9 9 8 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAGAAGGGCGTGAATATAG</pcr_primer_p1>
		<pcr_primer_p2>TAATAAGCTGGAACTACAACAGC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAGAGAAGGGCGTGAATATAGAGATGTATTTCGATGGTTACTATAGTTCCAGTGTATTACTGTAGTACTGTCAAGCTACTGTAGTTCAATATAGTTACTGTATTGCGGTGGTTACTGTAGTTCCAGTGTATTATTATAATACAATGTAGTTACTGTGTATTACGGCGGTTACTGTGGTTCCAGTGAATTACTGTAGAATAGTGCAGTTACTGTATTCCGGCGGCTGTTGTAGTTCCAGCTTATTA</canonical_amplicon>
		<polymorphic_amplicon>GAGAGAAGGGCGTGAATATAGAGATGTATTTCGATGGTTACTATAGTTCCAGTGTATTACTGTAGTACTGTCAAGCTRCTGTAGTTCAATATAGTTACTGTATTGCGGTGGTTACTGTAGTTCCAGTGTATTATTATAATACAATGTAGTTACTGTGTATTACGGCGGTTACTGTGGTTCCAGTGAATTACTGTAGAATAGTGCAGTTACTGTATTCCGGCGGCTGTTGTAGTTCCAGCTTATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17594</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>489342</contig_pos>
        <strand>+</strand>
        <context>CTRCTGTAGT[A/T]CAATATAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTTACTATAGTTCCAGTGTATTACTGTAGTACTGTCAAGCTACTGTAGT</left_flank>
        <right_flank>CAATATAGTTACTGTATTGCGGTGGTTACTGTAGTTCCAGTGTATTATTA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCATATATGCTATCCAGCTCACCTAGTTATCCTAGACAACGCTAGAAAAGCAACAGAATATCAGTAAATAATCAAGAAATTTCAACTAGCAAGCAAGAAGTTTTGTTGTTTACTGCCACCAACAGCAAAGTAGTAGCAGAACTGAAACTGCGAGGCAACATCTCTCGGCGCCAGCTCTCTTAAAAGCAGAAAAAGCAAAAACGAGAGTAATAATCAATGGATCTCCTGCCCCGCGACGTCTGCGGCGTTTATTGGAAAGCGCGGCGCTGATGTTTGCTAGTTTCAGCTACATCATTGTTTATGTTCTGTGGTTTGTGTTGATCATAGACATCCTTGGAAGATAGGGTATAGTGAAAGGGTACGGTAGGACAGGTGATCAGAATACTTATGAATCACCGATGACTCTGAAAAAGAGAGAAGGGCGTGAATATAGAGATGTATTTCGATGGTTACTATAGTTCCAGTGTATTACTGTAGTACTGTCAAGCTACTGTAGTTCAATATAGTTACTGTATTGCGGTGGTTACTGTAGTTCCAGTGTATTATTATAATACAATGTAGTTACTGTGTATTACGGCGGTTACTGTGGTTCCAGTGAATTACTGTAGAATAGTGCAGTTACTGTATTCCGGCGGCTGTTGTAGTTCCAGCTTATTATTGTAGTACAGTGTGGTTACTGTACTACGGTGGTTACTGTAGTACAGCGTCGTTACTGTGTATTATTGTAGTTACTGTAGTTACTGTATTAAAAGGGTTTCAAAGATGATCTAGCCATTTTTATACCTTAAACACTTCAACATAAAGACCCTCCCACTTCTAACAGAACAATTTCGGATCTGTGTCTTGAAAAATGGAATCCCAGCCTCTAATTGACTGCCATCTAATAGAAGGCTACTCCAGCTGTGGATTGAATTTACAGTGCCATGATATTAGTTTAGAGAGCTCACGGTAAATTAGGATATATTCACATGTGCTTTAATGAGAGGGTGATGTCACAC</canonical>
            <polymorphic>AATCATATATGCTATCCAGCTCACCTAGTTATCCTAGACAACGCTAGAAAAGCAACAGAATATCAGTAAATAATCAAGAAATTTCAACTAGCAAGCAAGAAGTTTTGTTGTTTACTGCCACCAACAGCAAAGTAGTAGCAGAACTGAAACTGCGAGGCAACATCTCTCGGCGCCAGCTCTCTTAAAAGCAGAAAAAGCAAAAACGAGAGTAATAATCAATGGATCTCCTGCCCCGCGACGTCTGCGGCGTTTATTGGAAAGCGCGGCGCTGATGTTTGCTAGTTTCAGCTACATCATTGTTTATGTTCTGTGGTTTGTGTTGATCATAGACATCCTTGGAAGATAGGGTATAGTGAAAGGGTACGGTAGGACAGGTGATCAGAATACTTATGAATCACCGATGACTCTGAAAAAGAGAGAAGGGCGTGAATATAGAGATGTATTTCGATGGTTACTATAGTTCCAGTGTATTACTGTAGTACTGTCAAGCTACTGTAGTWCAATATAGTTACTGTATTGCGGTGGTTACTGTAGTTCCAGTGTATTATTATAATACAATGTAGTTACTGTGTATTACGGCGGTTACTGTGGTTCCAGTGAATTACTGTAGAATAGTGCAGTTACTGTATTCCGGCGGCTGTTGTAGTTCCAGCTTATTATTGTAGTACAGTGTGGTTACTGTACTACGGTGGTTACTGTAGTACAGCGTCGTTACTGTGTATTATTGTAGTTACTGTAGTTACTGTATTAAAAGGGTTTCAAAGATGATCTAGCCATTTTTATACCTTAAACACTTCAACATAAAGACCCTCCCACTTCTAACAGAACAATTTCGGATCTGTGTCTTGAAAAATGGAATCCCAGCCTCTAATTGACTGCCATCTAATAGAAGGCTACTCCAGCTGTGGATTGAATTTACAGTGCCATGATATTAGTTTAGAGAGCTCACGGTAAATTAGGATATATTCACATGTGCTTTAATGAGAGGGTGATGTCACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAGAAGGGCGTGAATATAG</pcr_primer_p1>
		<pcr_primer_p2>TAATAAGCTGGAACTACAACAGC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAGAGAAGGGCGTGAATATAGAGATGTATTTCGATGGTTACTATAGTTCCAGTGTATTACTGTAGTACTGTCAAGCTACTGTAGTTCAATATAGTTACTGTATTGCGGTGGTTACTGTAGTTCCAGTGTATTATTATAATACAATGTAGTTACTGTGTATTACGGCGGTTACTGTGGTTCCAGTGAATTACTGTAGAATAGTGCAGTTACTGTATTCCGGCGGCTGTTGTAGTTCCAGCTTATTA</canonical_amplicon>
		<polymorphic_amplicon>GAGAGAAGGGCGTGAATATAGAGATGTATTTCGATGGTTACTATAGTTCCAGTGTATTACTGTAGTACTGTCAAGCTACTGTAGTWCAATATAGTTACTGTATTGCGGTGGTTACTGTAGTTCCAGTGTATTATTATAATACAATGTAGTTACTGTGTATTACGGCGGTTACTGTGGTTCCAGTGAATTACTGTAGAATAGTGCAGTTACTGTATTCCGGCGGCTGTTGTAGTTCCAGCTTATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17595</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>489400</contig_pos>
        <strand>+</strand>
        <context>TTATAATACA[A/G]TGTAGTTACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTACTGTATTGCGGTGGTTACTGTAGTTCCAGTGTATTATTATAATACA</left_flank>
        <right_flank>TGTAGTTACTGTGTATTACGGCGGTTACTGTGGTTCCAGTGAATTACTGT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATCAGTAAATAATCAAGAAATTTCAACTAGCAAGCAAGAAGTTTTGTTGTTTACTGCCACCAACAGCAAAGTAGTAGCAGAACTGAAACTGCGAGGCAACATCTCTCGGCGCCAGCTCTCTTAAAAGCAGAAAAAGCAAAAACGAGAGTAATAATCAATGGATCTCCTGCCCCGCGACGTCTGCGGCGTTTATTGGAAAGCGCGGCGCTGATGTTTGCTAGTTTCAGCTACATCATTGTTTATGTTCTGTGGTTTGTGTTGATCATAGACATCCTTGGAAGATAGGGTATAGTGAAAGGGTACGGTAGGACAGGTGATCAGAATACTTATGAATCACCGATGACTCTGAAAAAGAGAGAAGGGCGTGAATATAGAGATGTATTTCGATGGTTACTATAGTTCCAGTGTATTACTGTAGTACTGTCAAGCTACTGTAGTTCAATATAGTTACTGTATTGCGGTGGTTACTGTAGTTCCAGTGTATTATTATAATACAATGTAGTTACTGTGTATTACGGCGGTTACTGTGGTTCCAGTGAATTACTGTAGAATAGTGCAGTTACTGTATTCCGGCGGCTGTTGTAGTTCCAGCTTATTATTGTAGTACAGTGTGGTTACTGTACTACGGTGGTTACTGTAGTACAGCGTCGTTACTGTGTATTATTGTAGTTACTGTAGTTACTGTATTAAAAGGGTTTCAAAGATGATCTAGCCATTTTTATACCTTAAACACTTCAACATAAAGACCCTCCCACTTCTAACAGAACAATTTCGGATCTGTGTCTTGAAAAATGGAATCCCAGCCTCTAATTGACTGCCATCTAATAGAAGGCTACTCCAGCTGTGGATTGAATTTACAGTGCCATGATATTAGTTTAGAGAGCTCACGGTAAATTAGGATATATTCACATGTGCTTTAATGAGAGGGTGATGTCACACTTTTCCTATCTCTCCTCTTTTTCTCTCATTCTCTCGCTAGTAAATTTCTGATTTTCCT</canonical>
            <polymorphic>AATATCAGTAAATAATCAAGAAATTTCAACTAGCAAGCAAGAAGTTTTGTTGTTTACTGCCACCAACAGCAAAGTAGTAGCAGAACTGAAACTGCGAGGCAACATCTCTCGGCGCCAGCTCTCTTAAAAGCAGAAAAAGCAAAAACGAGAGTAATAATCAATGGATCTCCTGCCCCGCGACGTCTGCGGCGTTTATTGGAAAGCGCGGCGCTGATGTTTGCTAGTTTCAGCTACATCATTGTTTATGTTCTGTGGTTTGTGTTGATCATAGACATCCTTGGAAGATAGGGTATAGTGAAAGGGTACGGTAGGACAGGTGATCAGAATACTTATGAATCACCGATGACTCTGAAAAAGAGAGAAGGGCGTGAATATAGAGATGTATTTCGATGGTTACTATAGTTCCAGTGTATTACTGTAGTACTGTCAAGCTACTGTAGTTCAATATAGTTACTGTATTGCGGTGGTTACTGTAGTTCCAGTGTATTATTATAATACARTGTAGTTACTGTGTATTACGGCGGTTACTGTGGTTCCAGTGAATTACTGTAGAATAGTGCAGTTACTGTATTCCGGCGGCTGTTGTAGTTCCAGCTTATTATTGTAGTACAGTGTGGTTACTGTACTACGGTGGTTACTGTAGTACAGCGTCGTTACTGTGTATTATTGTAGTTACTGTAGTTACTGTATTAAAAGGGTTTCAAAGATGATCTAGCCATTTTTATACCTTAAACACTTCAACATAAAGACCCTCCCACTTCTAACAGAACAATTTCGGATCTGTGTCTTGAAAAATGGAATCCCAGCCTCTAATTGACTGCCATCTAATAGAAGGCTACTCCAGCTGTGGATTGAATTTACAGTGCCATGATATTAGTTTAGAGAGCTCACGGTAAATTAGGATATATTCACATGTGCTTTAATGAGAGGGTGATGTCACACTTTTCCTATCTCTCCTCTTTTTCTCTCATTCTCTCGCTAGTAAATTTCTGATTTTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAGAAGGGCGTGAATATAG</pcr_primer_p1>
		<pcr_primer_p2>TAATAAGCTGGAACTACAACAGC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAGAGAAGGGCGTGAATATAGAGATGTATTTCGATGGTTACTATAGTTCCAGTGTATTACTGTAGTACTGTCAAGCTACTGTAGTTCAATATAGTTACTGTATTGCGGTGGTTACTGTAGTTCCAGTGTATTATTATAATACAATGTAGTTACTGTGTATTACGGCGGTTACTGTGGTTCCAGTGAATTACTGTAGAATAGTGCAGTTACTGTATTCCGGCGGCTGTTGTAGTTCCAGCTTATTA</canonical_amplicon>
		<polymorphic_amplicon>GAGAGAAGGGCGTGAATATAGAGATGTATTTCGATGGTTACTATAGTTCCAGTGTATTACTGTAGTACTGTCAAGCTACTGTAGTTCAATATAGTTACTGTATTGCGGTGGTTACTGTAGTTCCAGTGTATTATTATAATACARTGTAGTTACTGTGTATTACGGCGGTTACTGTGGTTCCAGTGAATTACTGTAGAATAGTGCAGTTACTGTATTCCGGCGGCTGTTGTAGTTCCAGCTTATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17596</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>489424</contig_pos>
        <strand>+</strand>
        <context>TATTACGGCG[A/G]TTACTGTGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGTTCCAGTGTATTATTATAATACAATGTAGTTACTGTGTATTACGGCG</left_flank>
        <right_flank>TTACTGTGGTTCCAGTGAATTACTGTAGAATAGTGCAGTTACTGTATTCC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAACTAGCAAGCAAGAAGTTTTGTTGTTTACTGCCACCAACAGCAAAGTAGTAGCAGAACTGAAACTGCGAGGCAACATCTCTCGGCGCCAGCTCTCTTAAAAGCAGAAAAAGCAAAAACGAGAGTAATAATCAATGGATCTCCTGCCCCGCGACGTCTGCGGCGTTTATTGGAAAGCGCGGCGCTGATGTTTGCTAGTTTCAGCTACATCATTGTTTATGTTCTGTGGTTTGTGTTGATCATAGACATCCTTGGAAGATAGGGTATAGTGAAAGGGTACGGTAGGACAGGTGATCAGAATACTTATGAATCACCGATGACTCTGAAAAAGAGAGAAGGGCGTGAATATAGAGATGTATTTCGATGGTTACTATAGTTCCAGTGTATTACTGTAGTACTGTCAAGCTACTGTAGTTCAATATAGTTACTGTATTGCGGTGGTTACTGTAGTTCCAGTGTATTATTATAATACAATGTAGTTACTGTGTATTACGGCGGTTACTGTGGTTCCAGTGAATTACTGTAGAATAGTGCAGTTACTGTATTCCGGCGGCTGTTGTAGTTCCAGCTTATTATTGTAGTACAGTGTGGTTACTGTACTACGGTGGTTACTGTAGTACAGCGTCGTTACTGTGTATTATTGTAGTTACTGTAGTTACTGTATTAAAAGGGTTTCAAAGATGATCTAGCCATTTTTATACCTTAAACACTTCAACATAAAGACCCTCCCACTTCTAACAGAACAATTTCGGATCTGTGTCTTGAAAAATGGAATCCCAGCCTCTAATTGACTGCCATCTAATAGAAGGCTACTCCAGCTGTGGATTGAATTTACAGTGCCATGATATTAGTTTAGAGAGCTCACGGTAAATTAGGATATATTCACATGTGCTTTAATGAGAGGGTGATGTCACACTTTTCCTATCTCTCCTCTTTTTCTCTCATTCTCTCGCTAGTAAATTTCTGATTTTCCTGAAATAATATTTTCAGAAATTTCA</canonical>
            <polymorphic>TTCAACTAGCAAGCAAGAAGTTTTGTTGTTTACTGCCACCAACAGCAAAGTAGTAGCAGAACTGAAACTGCGAGGCAACATCTCTCGGCGCCAGCTCTCTTAAAAGCAGAAAAAGCAAAAACGAGAGTAATAATCAATGGATCTCCTGCCCCGCGACGTCTGCGGCGTTTATTGGAAAGCGCGGCGCTGATGTTTGCTAGTTTCAGCTACATCATTGTTTATGTTCTGTGGTTTGTGTTGATCATAGACATCCTTGGAAGATAGGGTATAGTGAAAGGGTACGGTAGGACAGGTGATCAGAATACTTATGAATCACCGATGACTCTGAAAAAGAGAGAAGGGCGTGAATATAGAGATGTATTTCGATGGTTACTATAGTTCCAGTGTATTACTGTAGTACTGTCAAGCTACTGTAGTTCAATATAGTTACTGTATTGCGGTGGTTACTGTAGTTCCAGTGTATTATTATAATACAATGTAGTTACTGTGTATTACGGCGRTTACTGTGGTTCCAGTGAATTACTGTAGAATAGTGCAGTTACTGTATTCCGGCGGCTGTTGTAGTTCCAGCTTATTATTGTAGTACAGTGTGGTTACTGTACTACGGTGGTTACTGTAGTACAGCGTCGTTACTGTGTATTATTGTAGTTACTGTAGTTACTGTATTAAAAGGGTTTCAAAGATGATCTAGCCATTTTTATACCTTAAACACTTCAACATAAAGACCCTCCCACTTCTAACAGAACAATTTCGGATCTGTGTCTTGAAAAATGGAATCCCAGCCTCTAATTGACTGCCATCTAATAGAAGGCTACTCCAGCTGTGGATTGAATTTACAGTGCCATGATATTAGTTTAGAGAGCTCACGGTAAATTAGGATATATTCACATGTGCTTTAATGAGAGGGTGATGTCACACTTTTCCTATCTCTCCTCTTTTTCTCTCATTCTCTCGCTAGTAAATTTCTGATTTTCCTGAAATAATATTTTCAGAAATTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>449 345 151 55</canonical_bands>
                <polymorphic_bands>449 400 151</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>368 255 89 57 55 38 38 19 19 19 17 17 9</canonical_bands>
                <polymorphic_bands>368 255 89 57 57 55 38 19 19 17 17 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGTTACTGTAGTTCCAGTGTATT</pcr_primer_p1>
		<pcr_primer_p2>ATCATCTTTGAAACCCTTTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGGTTACTGTAGTTCCAGTGTATTATTATAATACAATGTAGTTACTGTGTATTACGGCGGTTACTGTGGTTCCAGTGAATTACTGTAGAATAGTGCAGTTACTGTATTCCGGCGGCTGTTGTAGTTCCAGCTTATTATTGTAGTACAGTGTGGTTACTGTACTACGGTGGTTACTGTAGTACAGCGTCGTTACTGTGTATTATTGTAGTTACTGTAGTTACTGTATTAAAAGGGTTTCAAAGATGAT</canonical_amplicon>
		<polymorphic_amplicon>TGGTTACTGTAGTTCCAGTGTATTATTATAATACAATGTAGTTACTGTGTATTACGGCGRTTACTGTGGTTCCAGTGAATTACTGTAGAATAGTGCAGTTACTGTATTCCGGCGGCTGTTGTAGTTCCAGCTTATTATTGTAGTACAGTGTGGTTACTGTACTACGGTGGTTACTGTAGTACAGCGTCGTTACTGTGTATTATTGTAGTTACTGTAGTTACTGTATTAAAAGGGTTTCAAAGATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17597</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>489442</contig_pos>
        <strand>+</strand>
        <context>GGTTCCAGTG[A/T]ATTACTGTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATAATACAATGTAGTTACTGTGTATTACGGCGGTTACTGTGGTTCCAGTG</left_flank>
        <right_flank>ATTACTGTAGAATAGTGCAGTTACTGTATTCCGGCGGCTGTTGTAGTTCC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTTTGTTGTTTACTGCCACCAACAGCAAAGTAGTAGCAGAACTGAAACTGCGAGGCAACATCTCTCGGCGCCAGCTCTCTTAAAAGCAGAAAAAGCAAAAACGAGAGTAATAATCAATGGATCTCCTGCCCCGCGACGTCTGCGGCGTTTATTGGAAAGCGCGGCGCTGATGTTTGCTAGTTTCAGCTACATCATTGTTTATGTTCTGTGGTTTGTGTTGATCATAGACATCCTTGGAAGATAGGGTATAGTGAAAGGGTACGGTAGGACAGGTGATCAGAATACTTATGAATCACCGATGACTCTGAAAAAGAGAGAAGGGCGTGAATATAGAGATGTATTTCGATGGTTACTATAGTTCCAGTGTATTACTGTAGTACTGTCAAGCTACTGTAGTTCAATATAGTTACTGTATTGCGGTGGTTACTGTAGTTCCAGTGTATTATTATAATACAATGTAGTTACTGTGTATTACGGCGGTTACTGTGGTTCCAGTGAATTACTGTAGAATAGTGCAGTTACTGTATTCCGGCGGCTGTTGTAGTTCCAGCTTATTATTGTAGTACAGTGTGGTTACTGTACTACGGTGGTTACTGTAGTACAGCGTCGTTACTGTGTATTATTGTAGTTACTGTAGTTACTGTATTAAAAGGGTTTCAAAGATGATCTAGCCATTTTTATACCTTAAACACTTCAACATAAAGACCCTCCCACTTCTAACAGAACAATTTCGGATCTGTGTCTTGAAAAATGGAATCCCAGCCTCTAATTGACTGCCATCTAATAGAAGGCTACTCCAGCTGTGGATTGAATTTACAGTGCCATGATATTAGTTTAGAGAGCTCACGGTAAATTAGGATATATTCACATGTGCTTTAATGAGAGGGTGATGTCACACTTTTCCTATCTCTCCTCTTTTTCTCTCATTCTCTCGCTAGTAAATTTCTGATTTTCCTGAAATAATATTTTCAGAAATTTCACTCACTTTGTTTCTCCGC</canonical>
            <polymorphic>AGTTTTGTTGTTTACTGCCACCAACAGCAAAGTAGTAGCAGAACTGAAACTGCGAGGCAACATCTCTCGGCGCCAGCTCTCTTAAAAGCAGAAAAAGCAAAAACGAGAGTAATAATCAATGGATCTCCTGCCCCGCGACGTCTGCGGCGTTTATTGGAAAGCGCGGCGCTGATGTTTGCTAGTTTCAGCTACATCATTGTTTATGTTCTGTGGTTTGTGTTGATCATAGACATCCTTGGAAGATAGGGTATAGTGAAAGGGTACGGTAGGACAGGTGATCAGAATACTTATGAATCACCGATGACTCTGAAAAAGAGAGAAGGGCGTGAATATAGAGATGTATTTCGATGGTTACTATAGTTCCAGTGTATTACTGTAGTACTGTCAAGCTACTGTAGTTCAATATAGTTACTGTATTGCGGTGGTTACTGTAGTTCCAGTGTATTATTATAATACAATGTAGTTACTGTGTATTACGGCGGTTACTGTGGTTCCAGTGWATTACTGTAGAATAGTGCAGTTACTGTATTCCGGCGGCTGTTGTAGTTCCAGCTTATTATTGTAGTACAGTGTGGTTACTGTACTACGGTGGTTACTGTAGTACAGCGTCGTTACTGTGTATTATTGTAGTTACTGTAGTTACTGTATTAAAAGGGTTTCAAAGATGATCTAGCCATTTTTATACCTTAAACACTTCAACATAAAGACCCTCCCACTTCTAACAGAACAATTTCGGATCTGTGTCTTGAAAAATGGAATCCCAGCCTCTAATTGACTGCCATCTAATAGAAGGCTACTCCAGCTGTGGATTGAATTTACAGTGCCATGATATTAGTTTAGAGAGCTCACGGTAAATTAGGATATATTCACATGTGCTTTAATGAGAGGGTGATGTCACACTTTTCCTATCTCTCCTCTTTTTCTCTCATTCTCTCGCTAGTAAATTTCTGATTTTCCTGAAATAATATTTTCAGAAATTTCACTCACTTTGTTTCTCCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>499 229 89 43 41 41 33 25</canonical_bands>
                <polymorphic_bands>728 89 43 41 41 33 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGTTACTGTAGTTCCAGTGTATT</pcr_primer_p1>
		<pcr_primer_p2>ATCATCTTTGAAACCCTTTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGGTTACTGTAGTTCCAGTGTATTATTATAATACAATGTAGTTACTGTGTATTACGGCGGTTACTGTGGTTCCAGTGAATTACTGTAGAATAGTGCAGTTACTGTATTCCGGCGGCTGTTGTAGTTCCAGCTTATTATTGTAGTACAGTGTGGTTACTGTACTACGGTGGTTACTGTAGTACAGCGTCGTTACTGTGTATTATTGTAGTTACTGTAGTTACTGTATTAAAAGGGTTTCAAAGATGAT</canonical_amplicon>
		<polymorphic_amplicon>TGGTTACTGTAGTTCCAGTGTATTATTATAATACAATGTAGTTACTGTGTATTACGGCGGTTACTGTGGTTCCAGTGWATTACTGTAGAATAGTGCAGTTACTGTATTCCGGCGGCTGTTGTAGTTCCAGCTTATTATTGTAGTACAGTGTGGTTACTGTACTACGGTGGTTACTGTAGTACAGCGTCGTTACTGTGTATTATTGTAGTTACTGTAGTTACTGTATTAAAAGGGTTTCAAAGATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17598</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>489661</contig_pos>
        <strand></strand>
        <context>cctcccactt[C/T]taacagaaca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTAGCCATTTTTATACCTTAAACACTTCAACATAAAGACCCTCCCACTT</left_flank>
        <right_flank>TAACAGAACAATTTCGGATCTGTGTCTTGAAAAATGGAATCCCAGCCTCT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGATCATAGACATCCTTGGAAGATAGGGTATAGTGAAAGGGTACGGTAGGACAGGTGATCAGAATACTTATGAATCACCGATGACTCTGAAAAAGAGAGAAGGGCGTGAATATAGAGATGTATTTCGATGGTTACTATAGTTCCAGTGTATTACTGTAGTACTGTCAAGCTACTGTAGTTCAATATAGTTACTGTATTGCGGTGGTTACTGTAGTTCCAGTGTATTATTATAATACAATGTAGTTACTGTGTATTACGGCGGTTACTGTGGTTCCAGTGAATTACTGTAGAATAGTGCAGTTACTGTATTCCGGCGGCTGTTGTAGTTCCAGCTTATTATTGTAGTACAGTGTGGTTACTGTACTACGGTGGTTACTGTAGTACAGCGTCGTTACTGTGTATTATTGTAGTTACTGTAGTTACTGTATTAAAAGGGTTTCAAAGATGATCTAGCCATTTTTATACCTTAAACACTTCAACATAAAGACCCTCCCACTTCTAACAGAACAATTTCGGATCTGTGTCTTGAAAAATGGAATCCCAGCCTCTAATTGACTGCCATCTAATAGAAGGCTACTCCAGCTGTGGATTGAATTTACAGTGCCATGATATTAGTTTAGAGAGCTCACGGTAAATTAGGATATATTCACATGTGCTTTAATGAGAGGGTGATGTCACACTTTTCCTATCTCTCCTCTTTTTCTCTCATTCTCTCGCTAGTAAATTTCTGATTTTCCTGAAATAATATTTTCAGAAATTTCACTCACTTTGTTTCTCCGCCCATTTCATAATTGTCATCTTTCCGCTAAGCTACGCCCAGAATTAGATCCCCTCCTCTCTAGAAATAATCACATCCTGCCTTGTCTAATCACTCTCTGTTTTTCATAGAATCACTTTTTTTTGGTGAACTATGTCCTGGGATATTTATAACCTTTCCATACCAACAATTTGTGTTGTTATTGAAATTTCAGGGGTTTTTGGTTCTTGTCATTTCGAATA</canonical>
            <polymorphic>TTGATCATAGACATCCTTGGAAGATAGGGTATAGTGAAAGGGTACGGTAGGACAGGTGATCAGAATACTTATGAATCACCGATGACTCTGAAAAAGAGAGAAGGGCGTGAATATAGAGATGTATTTCGATGGTTACTATAGTTCCAGTGTATTACTGTAGTACTGTCAAGCTACTGTAGTTCAATATAGTTACTGTATTGCGGTGGTTACTGTAGTTCCAGTGTATTATTATAATACAATGTAGTTACTGTGTATTACGGCGGTTACTGTGGTTCCAGTGAATTACTGTAGAATAGTGCAGTTACTGTATTCCGGCGGCTGTTGTAGTTCCAGCTTATTATTGTAGTACAGTGTGGTTACTGTACTACGGTGGTTACTGTAGTACAGCGTCGTTACTGTGTATTATTGTAGTTACTGTAGTTACTGTATTAAAAGGGTTTCAAAGATGATCTAGCCATTTTTATACCTTAAACACTTCAACATAAAGACCCTCCCACTTYTAACAGAACAATTTCGGATCTGTGTCTTGAAAAATGGAATCCCAGCCTCTAATTGACTGCCATCTAATAGAAGGCTACTCCAGCTGTGGATTGAATTTACAGTGCCATGATATTAGTTTAGAGAGCTCACGGTAAATTAGGATATATTCACATGTGCTTTAATGAGAGGGTGATGTCACACTTTTCCTATCTCTCCTCTTTTTCTCTCATTCTCTCGCTAGTAAATTTCTGATTTTCCTGAAATAATATTTTCAGAAATTTCACTCACTTTGTTTCTCCGCCCATTTCATAATTGTCATCTTTCCGCTAAGCTACGCCCAGAATTAGATCCCCTCCTCTCTAGAAATAATCACATCCTGCCTTGTCTAATCACTCTCTGTTTTTCATAGAATCACTTTTTTTTGGTGAACTATGTCCTGGGATATTTATAACCTTTCCATACCAACAATTTGTGTTGTTATTGAAATTTCAGGGGTTTTTGGTTCTTGTCATTTCGAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTAAAAGGGTTTCAAAGATGAT</pcr_primer_p1>
		<pcr_primer_p2>TGACATCACCCTCTCATTAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTAAAAGGGTTTCAAAGATGATCTAGCCATTTTTATACCTTAAACACTTCAACATAAAGACCCTCCCACTTCTAACAGAACAATTTCGGATCTGTGTCTTGAAAAATGGAATCCCAGCCTCTAATTGACTGCCATCTAATAGAAGGCTACTCCAGCTGTGGATTGAATTTACAGTGCCATGATATTAGTTTAGAGAGCTCACGGTAAATTAGGATATATTCACATGTGCTTTAATGAGAGGGTGATGTCA</canonical_amplicon>
		<polymorphic_amplicon>ATTAAAAGGGTTTCAAAGATGATCTAGCCATTTTTATACCTTAAACACTTCAACATAAAGACCCTCCCACTTYTAACAGAACAATTTCGGATCTGTGTCTTGAAAAATGGAATCCCAGCCTCTAATTGACTGCCATCTAATAGAAGGCTACTCCAGCTGTGGATTGAATTTACAGTGCCATGATATTAGTTTAGAGAGCTCACGGTAAATTAGGATATATTCACATGTGCTTTAATGAGAGGGTGATGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17650</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>489885</contig_pos>
        <strand>+</strand>
        <context>CTCGCTAGTA[A/C]ATTTCTGAKT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGTCACACTTTTCCTATCTCTCCTCTTTTTCTCTCATTCTCTCGCTAGTA</left_flank>
        <right_flank>ATTTCTGATTTTCCTGAAATAATATTTTCAGAAATTTCACTCACTTTGTT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTATTATAATACAATGTAGTTACTGTGTATTACGGCGGTTACTGTGGTTCCAGTGAATTACTGTAGAATAGTGCAGTTACTGTATTCCGGCGGCTGTTGTAGTTCCAGCTTATTATTGTAGTACAGTGTGGTTACTGTACTACGGTGGTTACTGTAGTACAGCGTCGTTACTGTGTATTATTGTAGTTACTGTAGTTACTGTATTAAAAGGGTTTCAAAGATGATCTAGCCATTTTTATACCTTAAACACTTCAACATAAAGACCCTCCCACTTCTAACAGAACAATTTCGGATCTGTGTCTTGAAAAATGGAATCCCAGCCTCTAATTGACTGCCATCTAATAGAAGGCTACTCCAGCTGTGGATTGAATTTACAGTGCCATGATATTAGTTTAGAGAGCTCACGGTAAATTAGGATATATTCACATGTGCTTTAATGAGAGGGTGATGTCACACTTTTCCTATCTCTCCTCTTTTTCTCTCATTCTCTCGCTAGTAAATTTCTGATTTTCCTGAAATAATATTTTCAGAAATTTCACTCACTTTGTTTCTCCGCCCATTTCATAATTGTCATCTTTCCGCTAAGCTACGCCCAGAATTAGATCCCCTCCTCTCTAGAAATAATCACATCCTGCCTTGTCTAATCACTCTCTGTTTTTCATAGAATCACTTTTTTTTGGTGAACTATGTCCTGGGATATTTATAACCTTTCCATACCAACAATTTGTGTTGTTATTGAAATTTCAGGGGTTTTTGGTTCTTGTCATTTCGAATAGGAGAGTTATGGTAGTCAAACGATTTGAGATGTGATAACCACTTTTTTGAATTTTTGACCTTTACTAACTTTTTTGAAGAATAAACTAGTTTTAAAGAGGGGTCGTGTGGGGACCATACTCCGGAGGTACATATATCAAAAGAGGGTACATTATGCTCAGGAGGTACATAGTTTGAAGGAGTACTTCTAGGTAGTTGTCTCACTATAAGGGAGTACATCTAGGC</canonical>
            <polymorphic>ATTATTATAATACAATGTAGTTACTGTGTATTACGGCGGTTACTGTGGTTCCAGTGAATTACTGTAGAATAGTGCAGTTACTGTATTCCGGCGGCTGTTGTAGTTCCAGCTTATTATTGTAGTACAGTGTGGTTACTGTACTACGGTGGTTACTGTAGTACAGCGTCGTTACTGTGTATTATTGTAGTTACTGTAGTTACTGTATTAAAAGGGTTTCAAAGATGATCTAGCCATTTTTATACCTTAAACACTTCAACATAAAGACCCTCCCACTTCTAACAGAACAATTTCGGATCTGTGTCTTGAAAAATGGAATCCCAGCCTCTAATTGACTGCCATCTAATAGAAGGCTACTCCAGCTGTGGATTGAATTTACAGTGCCATGATATTAGTTTAGAGAGCTCACGGTAAATTAGGATATATTCACATGTGCTTTAATGAGAGGGTGATGTCACACTTTTCCTATCTCTCCTCTTTTTCTCTCATTCTCTCGCTAGTAMATTTCTGATTTTCCTGAAATAATATTTTCAGAAATTTCACTCACTTTGTTTCTCCGCCCATTTCATAATTGTCATCTTTCCGCTAAGCTACGCCCAGAATTAGATCCCCTCCTCTCTAGAAATAATCACATCCTGCCTTGTCTAATCACTCTCTGTTTTTCATAGAATCACTTTTTTTTGGTGAACTATGTCCTGGGATATTTATAACCTTTCCATACCAACAATTTGTGTTGTTATTGAAATTTCAGGGGTTTTTGGTTCTTGTCATTTCGAATAGGAGAGTTATGGTAGTCAAACGATTTGAGATGTGATAACCACTTTTTTGAATTTTTGACCTTTACTAACTTTTTTGAAGAATAAACTAGTTTTAAAGAGGGGTCGTGTGGGGACCATACTCCGGAGGTACATATATCAAAAGAGGGTACATTATGCTCAGGAGGTACATAGTTTGAAGGAGTACTTCTAGGTAGTTGTCTCACTATAAGGGAGTACATCTAGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>369 208 175 130 85 33</canonical_bands>
                <polymorphic_bands>369 208 175 163 85</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>229 175 125 89 85 56 43 41 41 34 33 31 18</canonical_bands>
                <polymorphic_bands>229 175 125 122 85 56 43 41 41 34 31 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGATGTCACACTTTTCCTATCT</pcr_primer_p1>
		<pcr_primer_p2>CAGGACATAGTTCACCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGATGTCACACTTTTCCTATCTCTCCTCTTTTTCTCTCATTCTCTCGCTAGTAAATTTCTGATTTTCCTGAAATAATATTTTCAGAAATTTCACTCACTTTGTTTCTCCGCCCATTTCATAATTGTCATCTTTCCGCTAAGCTACGCCCAGAATTAGATCCCCTCCTCTCTAGAAATAATCACATCCTGCCTTGTCTAATCACTCTCTGTTTTTCATAGAATCACTTTTTTTTGGTGAACTATGTCCTG</canonical_amplicon>
		<polymorphic_amplicon>GTGATGTCACACTTTTCCTATCTCTCCTCTTTTTCTCTCATTCTCTCGCTAGTAMATTTCTGATTTTCCTGAAATAATATTTTCAGAAATTTCACTCACTTTGTTTCTCCGCCCATTTCATAATTGTCATCTTTCCGCTAAGCTACGCCCAGAATTAGATCCCCTCCTCTCTAGAAATAATCACATCCTGCCTTGTCTAATCACTCTCTGTTTTTCATAGAATCACTTTTTTTTGGTGAACTATGTCCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17651</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>40082</contig_pos>
        <strand></strand>
        <context>TTGGAAAAAG[A/G]GCACACGGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAG</left_flank>
        <right_flank>GCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGAC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGGTTAGAAAAAAAAAGAATAATAAAGCAAATTACAAATTTTTTATAATAGACATGACTTTGGCTGGGCATAAAAACATGAAAAAACGTGTTGTTCAGTTGATTCAGATCGTTTTCGTGAGTTTGGAGCTCGGCTGTCACATGTCGGTTCATTTCAAAAATTTTGAAGATTACAAAACAGACCTAGATTGAAAACTTTGAATTCACTGAAGTTTCAAAAATGAAGTTTTAAAAGTGATCCGACGATTGACAGCCGAGATCCAGACTCCTGAAAAAGGTCAAAATCAACTAAACAACACGTTTTGTAAAAAATTCTACAATTTCTTATATTCTTCAAATTTTCATTTCGAACAATATTTCAAATCTCTTAATTACTTCAAAAAAACAAAACAACTACAGGGAAATTACAAAAAAATTAAATACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAGTACTCCCGCATATTTTTTGACACTTCGC</canonical>
            <polymorphic>GGGGTTAGAAAAAAAAAGAATAATAAAGCAAATTACAAATTTTTTATAATAGACATGACTTTGGCTGGGCATAAAAACATGAAAAAACGTGTTGTTCAGTTGATTCAGATCGTTTTCGTGAGTTTGGAGCTCGGCTGTCACATGTCGGTTCATTTCAAAAATTTTGAAGATTACAAAACAGACCTAGATTGAAAACTTTGAATTCACTGAAGTTTCAAAAATGAAGTTTTAAAAGTGATCCGACGATTGACAGCCGAGATCCAGACTCCTGAAAAAGGTCAAAATCAACTAAACAACACGTTTTGTAAAAAATTCTACAATTTCTTATATTCTTCAAATTTTCATTTCGAACAATATTTCAAATCTCTTAATTACTTCAAAAAAACAAAACAACTACAGGGAAATTACAAAAAAATTAAATACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGRGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAGTACTCCCGCATATTTTTTGACACTTCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>497 372 131</canonical_bands>
                <polymorphic_bands>869 131</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>497 372 131</canonical_bands>
                <polymorphic_bands>869 131</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCATTTCGAACAATATTTCA</pcr_primer_p1>
		<pcr_primer_p2>AAGTCTCTTTCCCCATAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTCATTTCGAACAATATTTCAAATCTCTTAATTACTTCAAAAAAACAAAACAACTACAGGGAAATTACAAAAAAATTAAATACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCATTTCGAACAATATTTCAAATCTCTTAATTACTTCAAAAAAACAAAACAACTACAGGGAAATTACAAAAAAATTAAATACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGRGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17652</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>40104</contig_pos>
        <strand>+</strand>
        <context>AGAATCGGTT[C/T]GAAAAAGTAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTT</left_flank>
        <right_flank>GAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAAGCAAATTACAAATTTTTTATAATAGACATGACTTTGGCTGGGCATAAAAACATGAAAAAACGTGTTGTTCAGTTGATTCAGATCGTTTTCGTGAGTTTGGAGCTCGGCTGTCACATGTCGGTTCATTTCAAAAATTTTGAAGATTACAAAACAGACCTAGATTGAAAACTTTGAATTCACTGAAGTTTCAAAAATGAAGTTTTAAAAGTGATCCGACGATTGACAGCCGAGATCCAGACTCCTGAAAAAGGTCAAAATCAACTAAACAACACGTTTTGTAAAAAATTCTACAATTTCTTATATTCTTCAAATTTTCATTTCGAACAATATTTCAAATCTCTTAATTACTTCAAAAAAACAAAACAACTACAGGGAAATTACAAAAAAATTAAATACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAGTACTCCCGCATATTTTTTGACACTTCGCTCAAATGCTTCAACTCCTTATG</canonical>
            <polymorphic>ATAAAGCAAATTACAAATTTTTTATAATAGACATGACTTTGGCTGGGCATAAAAACATGAAAAAACGTGTTGTTCAGTTGATTCAGATCGTTTTCGTGAGTTTGGAGCTCGGCTGTCACATGTCGGTTCATTTCAAAAATTTTGAAGATTACAAAACAGACCTAGATTGAAAACTTTGAATTCACTGAAGTTTCAAAAATGAAGTTTTAAAAGTGATCCGACGATTGACAGCCGAGATCCAGACTCCTGAAAAAGGTCAAAATCAACTAAACAACACGTTTTGTAAAAAATTCTACAATTTCTTATATTCTTCAAATTTTCATTTCGAACAATATTTCAAATCTCTTAATTACTTCAAAAAAACAAAACAACTACAGGGAAATTACAAAAAAATTAAATACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTYGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAGTACTCCCGCATATTTTTTGACACTTCGCTCAAATGCTTCAACTCCTTATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 325 174</canonical_bands>
                <polymorphic_bands>675 325</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>358 326 174 142</canonical_bands>
                <polymorphic_bands>532 326 142</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACAATGTCATAAAAATCTGTG</pcr_primer_p1>
		<pcr_primer_p2>ATACTCCACCATCCCTTATTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTAT</canonical_amplicon>
		<polymorphic_amplicon>AAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTYGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17653</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>40122</contig_pos>
        <strand>+</strand>
        <context>TACACATAAT[A/T]RTTTTTTGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAAT</left_flank>
        <right_flank>ATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTATAATAGACATGACTTTGGCTGGGCATAAAAACATGAAAAAACGTGTTGTTCAGTTGATTCAGATCGTTTTCGTGAGTTTGGAGCTCGGCTGTCACATGTCGGTTCATTTCAAAAATTTTGAAGATTACAAAACAGACCTAGATTGAAAACTTTGAATTCACTGAAGTTTCAAAAATGAAGTTTTAAAAGTGATCCGACGATTGACAGCCGAGATCCAGACTCCTGAAAAAGGTCAAAATCAACTAAACAACACGTTTTGTAAAAAATTCTACAATTTCTTATATTCTTCAAATTTTCATTTCGAACAATATTTCAAATCTCTTAATTACTTCAAAAAAACAAAACAACTACAGGGAAATTACAAAAAAATTAAATACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAGTACTCCCGCATATTTTTTGACACTTCGCTCAAATGCTTCAACTCCTTATGGGTGTGCAGGAATCCCAC</canonical>
            <polymorphic>TTTTTATAATAGACATGACTTTGGCTGGGCATAAAAACATGAAAAAACGTGTTGTTCAGTTGATTCAGATCGTTTTCGTGAGTTTGGAGCTCGGCTGTCACATGTCGGTTCATTTCAAAAATTTTGAAGATTACAAAACAGACCTAGATTGAAAACTTTGAATTCACTGAAGTTTCAAAAATGAAGTTTTAAAAGTGATCCGACGATTGACAGCCGAGATCCAGACTCCTGAAAAAGGTCAAAATCAACTAAACAACACGTTTTGTAAAAAATTCTACAATTTCTTATATTCTTCAAATTTTCATTTCGAACAATATTTCAAATCTCTTAATTACTTCAAAAAAACAAAACAACTACAGGGAAATTACAAAAAAATTAAATACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATWATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAGTACTCCCGCATATTTTTTGACACTTCGCTCAAATGCTTCAACTCCTTATGGGTGTGCAGGAATCCCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>182 139 119 110 84 77 64 62 41 33 33 18 11 11 8 8</canonical_bands>
                <polymorphic_bands>182 139 139 119 110 84 64 41 33 33 18 11 11 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACAATGTCATAAAAATCTGTG</pcr_primer_p1>
		<pcr_primer_p2>ATACTCCACCATCCCTTATTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTAT</canonical_amplicon>
		<polymorphic_amplicon>AAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATWATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17654</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>40123</contig_pos>
        <strand>+</strand>
        <context>ACACATAATW[A/G]TTTTTTGACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATA</left_flank>
        <right_flank>TTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTATAATAGACATGACTTTGGCTGGGCATAAAAACATGAAAAAACGTGTTGTTCAGTTGATTCAGATCGTTTTCGTGAGTTTGGAGCTCGGCTGTCACATGTCGGTTCATTTCAAAAATTTTGAAGATTACAAAACAGACCTAGATTGAAAACTTTGAATTCACTGAAGTTTCAAAAATGAAGTTTTAAAAGTGATCCGACGATTGACAGCCGAGATCCAGACTCCTGAAAAAGGTCAAAATCAACTAAACAACACGTTTTGTAAAAAATTCTACAATTTCTTATATTCTTCAAATTTTCATTTCGAACAATATTTCAAATCTCTTAATTACTTCAAAAAAACAAAACAACTACAGGGAAATTACAAAAAAATTAAATACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAGTACTCCCGCATATTTTTTGACACTTCGCTCAAATGCTTCAACTCCTTATGGGTGTGCAGGAATCCCACA</canonical>
            <polymorphic>TTTTATAATAGACATGACTTTGGCTGGGCATAAAAACATGAAAAAACGTGTTGTTCAGTTGATTCAGATCGTTTTCGTGAGTTTGGAGCTCGGCTGTCACATGTCGGTTCATTTCAAAAATTTTGAAGATTACAAAACAGACCTAGATTGAAAACTTTGAATTCACTGAAGTTTCAAAAATGAAGTTTTAAAAGTGATCCGACGATTGACAGCCGAGATCCAGACTCCTGAAAAAGGTCAAAATCAACTAAACAACACGTTTTGTAAAAAATTCTACAATTTCTTATATTCTTCAAATTTTCATTTCGAACAATATTTCAAATCTCTTAATTACTTCAAAAAAACAAAACAACTACAGGGAAATTACAAAAAAATTAAATACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATARTTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAGTACTCCCGCATATTTTTTGACACTTCGCTCAAATGCTTCAACTCCTTATGGGTGTGCAGGAATCCCACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>183 139 118 110 84 77 64 62 41 33 33 18 11 11 8 8</canonical_bands>
                <polymorphic_bands>183 139 139 118 110 84 64 41 33 33 18 11 11 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACAATGTCATAAAAATCTGTG</pcr_primer_p1>
		<pcr_primer_p2>ATACTCCACCATCCCTTATTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTAT</canonical_amplicon>
		<polymorphic_amplicon>AAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATARTTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17655</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>40324</contig_pos>
        <strand>+</strand>
        <context>AGAGAGTAGG[G/T]ATAGTGAART</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGG</left_flank>
        <right_flank>ATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGATTGACAGCCGAGATCCAGACTCCTGAAAAAGGTCAAAATCAACTAAACAACACGTTTTGTAAAAAATTCTACAATTTCTTATATTCTTCAAATTTTCATTTCGAACAATATTTCAAATCTCTTAATTACTTCAAAAAAACAAAACAACTACAGGGAAATTACAAAAAAATTAAATACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAGTACTCCCGCATATTTTTTGACACTTCGCTCAAATGCTTCAACTCCTTATGGGTGTGCAGGAATCCCACATAATTCGGATCAATGGTTCGTTCTGACATACGGCAGGATGATGTTGATGATTTATCTTGCTCGTCAGAAGATACCAACTCATTTATGATGTTTCGATTTTCCAGGATACCACGACGCGATTTGAAGGGGCGGACTCTGGAAACATTAAAGTTTAAGAAATAATTATGTTAAAATTTCAAAGAAACTTACTGTGGTTGCATT</canonical>
            <polymorphic>ACGATTGACAGCCGAGATCCAGACTCCTGAAAAAGGTCAAAATCAACTAAACAACACGTTTTGTAAAAAATTCTACAATTTCTTATATTCTTCAAATTTTCATTTCGAACAATATTTCAAATCTCTTAATTACTTCAAAAAAACAAAACAACTACAGGGAAATTACAAAAAAATTAAATACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGKATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAGTACTCCCGCATATTTTTTGACACTTCGCTCAAATGCTTCAACTCCTTATGGGTGTGCAGGAATCCCACATAATTCGGATCAATGGTTCGTTCTGACATACGGCAGGATGATGTTGATGATTTATCTTGCTCGTCAGAAGATACCAACTCATTTATGATGTTTCGATTTTCCAGGATACCACGACGCGATTTGAAGGGGCGGACTCTGGAAACATTAAAGTTTAAGAAATAATTATGTTAAAATTTCAAAGAAACTTACTGTGGTTGCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGGTGCGACTAGAATAAG</pcr_primer_p1>
		<pcr_primer_p2>ACATATTCCACCTCATATGAATC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGT</canonical_amplicon>
		<polymorphic_amplicon>CAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGKATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17656</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>40333</contig_pos>
        <strand>+</strand>
        <context>GKATAGTGAA[A/G]TGATAATTRT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAA</left_flank>
        <right_flank>TGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCCGAGATCCAGACTCCTGAAAAAGGTCAAAATCAACTAAACAACACGTTTTGTAAAAAATTCTACAATTTCTTATATTCTTCAAATTTTCATTTCGAACAATATTTCAAATCTCTTAATTACTTCAAAAAAACAAAACAACTACAGGGAAATTACAAAAAAATTAAATACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAGTACTCCCGCATATTTTTTGACACTTCGCTCAAATGCTTCAACTCCTTATGGGTGTGCAGGAATCCCACATAATTCGGATCAATGGTTCGTTCTGACATACGGCAGGATGATGTTGATGATTTATCTTGCTCGTCAGAAGATACCAACTCATTTATGATGTTTCGATTTTCCAGGATACCACGACGCGATTTGAAGGGGCGGACTCTGGAAACATTAAAGTTTAAGAAATAATTATGTTAAAATTTCAAAGAAACTTACTGTGGTTGCATTTCAAATTGT</canonical>
            <polymorphic>AGCCGAGATCCAGACTCCTGAAAAAGGTCAAAATCAACTAAACAACACGTTTTGTAAAAAATTCTACAATTTCTTATATTCTTCAAATTTTCATTTCGAACAATATTTCAAATCTCTTAATTACTTCAAAAAAACAAAACAACTACAGGGAAATTACAAAAAAATTAAATACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAARTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAGTACTCCCGCATATTTTTTGACACTTCGCTCAAATGCTTCAACTCCTTATGGGTGTGCAGGAATCCCACATAATTCGGATCAATGGTTCGTTCTGACATACGGCAGGATGATGTTGATGATTTATCTTGCTCGTCAGAAGATACCAACTCATTTATGATGTTTCGATTTTCCAGGATACCACGACGCGATTTGAAGGGGCGGACTCTGGAAACATTAAAGTTTAAGAAATAATTATGTTAAAATTTCAAAGAAACTTACTGTGGTTGCATTTCAAATTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>154 126 113 96 82 63 47 47 35 32 32 28 27 22 21 17 12 12 11 9 5 3 2 2 2</canonical_bands>
                <polymorphic_bands>159 126 113 96 82 63 47 47 35 32 32 28 27 22 21 17 12 12 11 9 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGGGTGCGACTAGAATAAG</pcr_primer_p1>
		<pcr_primer_p2>ACATATTCCACCTCATATGAATC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGT</canonical_amplicon>
		<polymorphic_amplicon>CAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAARTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17657</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>40342</contig_pos>
        <strand>+</strand>
        <context>ARTGATAATT[A/G]TRTACWAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATT</left_flank>
        <right_flank>TATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGACTCCTGAAAAAGGTCAAAATCAACTAAACAACACGTTTTGTAAAAAATTCTACAATTTCTTATATTCTTCAAATTTTCATTTCGAACAATATTTCAAATCTCTTAATTACTTCAAAAAAACAAAACAACTACAGGGAAATTACAAAAAAATTAAATACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAGTACTCCCGCATATTTTTTGACACTTCGCTCAAATGCTTCAACTCCTTATGGGTGTGCAGGAATCCCACATAATTCGGATCAATGGTTCGTTCTGACATACGGCAGGATGATGTTGATGATTTATCTTGCTCGTCAGAAGATACCAACTCATTTATGATGTTTCGATTTTCCAGGATACCACGACGCGATTTGAAGGGGCGGACTCTGGAAACATTAAAGTTTAAGAAATAATTATGTTAAAATTTCAAAGAAACTTACTGTGGTTGCATTTCAAATTGTTCTTGCAGT</canonical>
            <polymorphic>CCAGACTCCTGAAAAAGGTCAAAATCAACTAAACAACACGTTTTGTAAAAAATTCTACAATTTCTTATATTCTTCAAATTTTCATTTCGAACAATATTTCAAATCTCTTAATTACTTCAAAAAAACAAAACAACTACAGGGAAATTACAAAAAAATTAAATACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTRTATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAGTACTCCCGCATATTTTTTGACACTTCGCTCAAATGCTTCAACTCCTTATGGGTGTGCAGGAATCCCACATAATTCGGATCAATGGTTCGTTCTGACATACGGCAGGATGATGTTGATGATTTATCTTGCTCGTCAGAAGATACCAACTCATTTATGATGTTTCGATTTTCCAGGATACCACGACGCGATTTGAAGGGGCGGACTCTGGAAACATTAAAGTTTAAGAAATAATTATGTTAAAATTTCAAAGAAACTTACTGTGGTTGCATTTCAAATTGTTCTTGCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGGTGCGACTAGAATAAG</pcr_primer_p1>
		<pcr_primer_p2>ACATATTCCACCTCATATGAATC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGT</canonical_amplicon>
		<polymorphic_amplicon>CAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTRTATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17658</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>40344</contig_pos>
        <strand>+</strand>
        <context>TGATAATTRT[A/G]TACWAAACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTAT</left_flank>
        <right_flank>TACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACTCCTGAAAAAGGTCAAAATCAACTAAACAACACGTTTTGTAAAAAATTCTACAATTTCTTATATTCTTCAAATTTTCATTTCGAACAATATTTCAAATCTCTTAATTACTTCAAAAAAACAAAACAACTACAGGGAAATTACAAAAAAATTAAATACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAGTACTCCCGCATATTTTTTGACACTTCGCTCAAATGCTTCAACTCCTTATGGGTGTGCAGGAATCCCACATAATTCGGATCAATGGTTCGTTCTGACATACGGCAGGATGATGTTGATGATTTATCTTGCTCGTCAGAAGATACCAACTCATTTATGATGTTTCGATTTTCCAGGATACCACGACGCGATTTGAAGGGGCGGACTCTGGAAACATTAAAGTTTAAGAAATAATTATGTTAAAATTTCAAAGAAACTTACTGTGGTTGCATTTCAAATTGTTCTTGCAGTTT</canonical>
            <polymorphic>AGACTCCTGAAAAAGGTCAAAATCAACTAAACAACACGTTTTGTAAAAAATTCTACAATTTCTTATATTCTTCAAATTTTCATTTCGAACAATATTTCAAATCTCTTAATTACTTCAAAAAAACAAAACAACTACAGGGAAATTACAAAAAAATTAAATACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATRTACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAGTACTCCCGCATATTTTTTGACACTTCGCTCAAATGCTTCAACTCCTTATGGGTGTGCAGGAATCCCACATAATTCGGATCAATGGTTCGTTCTGACATACGGCAGGATGATGTTGATGATTTATCTTGCTCGTCAGAAGATACCAACTCATTTATGATGTTTCGATTTTCCAGGATACCACGACGCGATTTGAAGGGGCGGACTCTGGAAACATTAAAGTTTAAGAAATAATTATGTTAAAATTTCAAAGAAACTTACTGTGGTTGCATTTCAAATTGTTCTTGCAGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGATTCTCTACGACACTAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAGACCTGGCTCTAGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCT</canonical_amplicon>
		<polymorphic_amplicon>CCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATRTACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17659</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>40384</contig_pos>
        <strand></strand>
        <context>AAATAAAGCA[T/A]WTTATAGAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCA</left_flank>
        <right_flank>ATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTAAAAAATTCTACAATTTCTTATATTCTTCAAATTTTCATTTCGAACAATATTTCAAATCTCTTAATTACTTCAAAAAAACAAAACAACTACAGGGAAATTACAAAAAAATTAAATACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAGTACTCCCGCATATTTTTTGACACTTCGCTCAAATGCTTCAACTCCTTATGGGTGTGCAGGAATCCCACATAATTCGGATCAATGGTTCGTTCTGACATACGGCAGGATGATGTTGATGATTTATCTTGCTCGTCAGAAGATACCAACTCATTTATGATGTTTCGATTTTCCAGGATACCACGACGCGATTTGAAGGGGCGGACTCTGGAAACATTAAAGTTTAAGAAATAATTATGTTAAAATTTCAAAGAAACTTACTGTGGTTGCATTTCAAATTGTTCTTGCAGTTTATTAAATCGTTGTGAAACAACAAACTTCAAAACTCCGTCA</canonical>
            <polymorphic>TTGTAAAAAATTCTACAATTTCTTATATTCTTCAAATTTTCATTTCGAACAATATTTCAAATCTCTTAATTACTTCAAAAAAACAAAACAACTACAGGGAAATTACAAAAAAATTAAATACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCAWATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAGTACTCCCGCATATTTTTTGACACTTCGCTCAAATGCTTCAACTCCTTATGGGTGTGCAGGAATCCCACATAATTCGGATCAATGGTTCGTTCTGACATACGGCAGGATGATGTTGATGATTTATCTTGCTCGTCAGAAGATACCAACTCATTTATGATGTTTCGATTTTCCAGGATACCACGACGCGATTTGAAGGGGCGGACTCTGGAAACATTAAAGTTTAAGAAATAATTATGTTAAAATTTCAAAGAAACTTACTGTGGTTGCATTTCAAATTGTTCTTGCAGTTTATTAAATCGTTGTGAAACAACAAACTTCAAAACTCCGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTACGACACTAAAAGAGAGTAGG</pcr_primer_p1>
		<pcr_primer_p2>TACTAACAGAAGACCTGGCTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTA</canonical_amplicon>
		<polymorphic_amplicon>CTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCAWATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17660</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>40385</contig_pos>
        <strand>+</strand>
        <context>AATAAAGCAW[A/T]TTATAGAAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCAT</left_flank>
        <right_flank>TTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTAAAAAATTCTACAATTTCTTATATTCTTCAAATTTTCATTTCGAACAATATTTCAAATCTCTTAATTACTTCAAAAAAACAAAACAACTACAGGGAAATTACAAAAAAATTAAATACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAGTACTCCCGCATATTTTTTGACACTTCGCTCAAATGCTTCAACTCCTTATGGGTGTGCAGGAATCCCACATAATTCGGATCAATGGTTCGTTCTGACATACGGCAGGATGATGTTGATGATTTATCTTGCTCGTCAGAAGATACCAACTCATTTATGATGTTTCGATTTTCCAGGATACCACGACGCGATTTGAAGGGGCGGACTCTGGAAACATTAAAGTTTAAGAAATAATTATGTTAAAATTTCAAAGAAACTTACTGTGGTTGCATTTCAAATTGTTCTTGCAGTTTATTAAATCGTTGTGAAACAACAAACTTCAAAACTCCGTCAA</canonical>
            <polymorphic>TGTAAAAAATTCTACAATTTCTTATATTCTTCAAATTTTCATTTCGAACAATATTTCAAATCTCTTAATTACTTCAAAAAAACAAAACAACTACAGGGAAATTACAAAAAAATTAAATACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATWTTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAGTACTCCCGCATATTTTTTGACACTTCGCTCAAATGCTTCAACTCCTTATGGGTGTGCAGGAATCCCACATAATTCGGATCAATGGTTCGTTCTGACATACGGCAGGATGATGTTGATGATTTATCTTGCTCGTCAGAAGATACCAACTCATTTATGATGTTTCGATTTTCCAGGATACCACGACGCGATTTGAAGGGGCGGACTCTGGAAACATTAAAGTTTAAGAAATAATTATGTTAAAATTTCAAAGAAACTTACTGTGGTTGCATTTCAAATTGTTCTTGCAGTTTATTAAATCGTTGTGAAACAACAAACTTCAAAACTCCGTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTACGACACTAAAAGAGAGTAGG</pcr_primer_p1>
		<pcr_primer_p2>TACTAACAGAAGACCTGGCTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTA</canonical_amplicon>
		<polymorphic_amplicon>CTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATWTTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17661</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>40416</contig_pos>
        <strand>+</strand>
        <context>GGAGTTATTT[A/T]AAAAGAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTT</left_flank>
        <right_flank>AAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAAT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAATTTTCATTTCGAACAATATTTCAAATCTCTTAATTACTTCAAAAAAACAAAACAACTACAGGGAAATTACAAAAAAATTAAATACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAGTACTCCCGCATATTTTTTGACACTTCGCTCAAATGCTTCAACTCCTTATGGGTGTGCAGGAATCCCACATAATTCGGATCAATGGTTCGTTCTGACATACGGCAGGATGATGTTGATGATTTATCTTGCTCGTCAGAAGATACCAACTCATTTATGATGTTTCGATTTTCCAGGATACCACGACGCGATTTGAAGGGGCGGACTCTGGAAACATTAAAGTTTAAGAAATAATTATGTTAAAATTTCAAAGAAACTTACTGTGGTTGCATTTCAAATTGTTCTTGCAGTTTATTAAATCGTTGTGAAACAACAAACTTCAAAACTCCGTCAATCGAACCAGCACGTGTCAATGTTTCATGATC</canonical>
            <polymorphic>CAAATTTTCATTTCGAACAATATTTCAAATCTCTTAATTACTTCAAAAAAACAAAACAACTACAGGGAAATTACAAAAAAATTAAATACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTWAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAGTACTCCCGCATATTTTTTGACACTTCGCTCAAATGCTTCAACTCCTTATGGGTGTGCAGGAATCCCACATAATTCGGATCAATGGTTCGTTCTGACATACGGCAGGATGATGTTGATGATTTATCTTGCTCGTCAGAAGATACCAACTCATTTATGATGTTTCGATTTTCCAGGATACCACGACGCGATTTGAAGGGGCGGACTCTGGAAACATTAAAGTTTAAGAAATAATTATGTTAAAATTTCAAAGAAACTTACTGTGGTTGCATTTCAAATTGTTCTTGCAGTTTATTAAATCGTTGTGAAACAACAAACTTCAAAACTCCGTCAATCGAACCAGCACGTGTCAATGTTTCATGATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>325 203 147 70 55 48 45 34 22 20 16 8 7</canonical_bands>
                <polymorphic_bands>325 203 147 70 65 55 48 34 22 16 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTACGACACTAAAAGAGAGTAGG</pcr_primer_p1>
		<pcr_primer_p2>TACTAACAGAAGACCTGGCTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTA</canonical_amplicon>
		<polymorphic_amplicon>CTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTWAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17662</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>40464</contig_pos>
        <strand>+</strand>
        <context>GGGAAAATCG[A/G]ATCCGTTTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCG</left_flank>
        <right_flank>ATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCAC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACAAAACAACTACAGGGAAATTACAAAAAAATTAAATACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAGTACTCCCGCATATTTTTTGACACTTCGCTCAAATGCTTCAACTCCTTATGGGTGTGCAGGAATCCCACATAATTCGGATCAATGGTTCGTTCTGACATACGGCAGGATGATGTTGATGATTTATCTTGCTCGTCAGAAGATACCAACTCATTTATGATGTTTCGATTTTCCAGGATACCACGACGCGATTTGAAGGGGCGGACTCTGGAAACATTAAAGTTTAAGAAATAATTATGTTAAAATTTCAAAGAAACTTACTGTGGTTGCATTTCAAATTGTTCTTGCAGTTTATTAAATCGTTGTGAAACAACAAACTTCAAAACTCCGTCAATCGAACCAGCACGTGTCAATGTTTCATGATCAAGTTCAAAACATAGGCGATCTCCTTTGGTTTGTACTGATTTCGGTCG</canonical>
            <polymorphic>AAACAAAACAACTACAGGGAAATTACAAAAAAATTAAATACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGRATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAGTACTCCCGCATATTTTTTGACACTTCGCTCAAATGCTTCAACTCCTTATGGGTGTGCAGGAATCCCACATAATTCGGATCAATGGTTCGTTCTGACATACGGCAGGATGATGTTGATGATTTATCTTGCTCGTCAGAAGATACCAACTCATTTATGATGTTTCGATTTTCCAGGATACCACGACGCGATTTGAAGGGGCGGACTCTGGAAACATTAAAGTTTAAGAAATAATTATGTTAAAATTTCAAAGAAACTTACTGTGGTTGCATTTCAAATTGTTCTTGCAGTTTATTAAATCGTTGTGAAACAACAAACTTCAAAACTCCGTCAATCGAACCAGCACGTGTCAATGTTTCATGATCAAGTTCAAAACATAGGCGATCTCCTTTGGTTTGTACTGATTTCGGTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>358 255 170 140 77</canonical_bands>
                <polymorphic_bands>613 170 140 77</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>209 200 168 141 139 131 12</canonical_bands>
                <polymorphic_bands>209 200 180 141 139 131</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>350 200 168 139 131 12</canonical_bands>
                <polymorphic_bands>350 200 180 139 131</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTACGACACTAAAAGAGAGTAGG</pcr_primer_p1>
		<pcr_primer_p2>TACTAACAGAAGACCTGGCTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTA</canonical_amplicon>
		<polymorphic_amplicon>CTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGRATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17663</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>44250</contig_pos>
        <strand>+</strand>
        <context>TTCGCGGCGT[A/T]ACTTTCCTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCTTTGTGACATGTAGCGTTGGTGTTCGTGGCGTTAGTGTTCGCGGCGT</left_flank>
        <right_flank>ACTTTCCTCGGCGAAAGAAGATTAACATCGTCCGGAATGATAATTTTGAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAGACTGAAAGAAAATTGGTATTCATTGTTGAAAGTTCAAATAAAGCACTTACTTTTGAACTCAGAATCAAGGATGTGTGGACGCTGAATTTTTTTATGAAGTCCGGTCATGATTTTGATTCCTCCCGGGAAGACTGAGATTCTTCTCTCAATTGCTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGTTATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATAGCGAATCTTCTTTTCATACTTTTCTTTTTCCGATGATATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGCTGAAGCTTCAGCATCTTTCCCATTATTTTTATCGATTACAAAGTCCTTTGTGACATGTAGCGTTGGTGTTCGTGGCGTTAGTGTTCGCGGCGTTACTTTCCTCGGCGAAAGAAGATTAACATCGTCCGGAATGATAATTTTGATAGGACTTTCCTCATCGTCCTCCTCTTGGTCAGATGTTGCAGGCATTGGAGACATGATATGATATTGACGACGTTTCCAAGCAATAGCGTTCATTGCATTTGACCTCATGTCTTCGATTTTACTTTTACCCTTTTCCACCAAGTACTGGTACCAATTGACAATGGCTGTGATTCGAGAAAACTGTTGGGCGTTTTGTTTCAAAATAAACTCGTTCGTCGTGTTAACAGTAGGCTGCTTGTACTCCGTCATGTTAACGCAGCATCTTCCAATGGTTACTTCCTCATATCTCCATTTTGCAACCTGACTTTTCTTAACGCCACAGTGCACTGAGAGCAGCGGGACAAATTTGGTTGCAATGAATCGGAAGGCCTCACGAATTTTGGTCTCATCATCCAGTTCGTCCTTGAAAACTTGATCCAGTTGTAGTTTGCAATAGACTCCCATAATAAA</canonical>
            <polymorphic>GTAGACTGAAAGAAAATTGGTATTCATTGTTGAAAGTTCAAATAAAGCACTTACTTTTGAACTCAGAATCAAGGATGTGTGGACGCTGAATTTTTTTATGAAGTCCGGTCATGATTTTGATTCCTCCCGGGAAGACTGAGATTCTTCTCTCAATTGCTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGTTATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATAGCGAATCTTCTTTTCATACTTTTCTTTTTCCGATGATATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGCTGAAGCTTCAGCATCTTTCCCATTATTTTTATCGATTACAAAGTCCTTTGTGACATGTAGCGTTGGTGTTCGTGGCGTTAGTGTTCGCGGCGTWACTTTCCTCGGCGAAAGAAGATTAACATCGTCCGGAATGATAATTTTGATAGGACTTTCCTCATCGTCCTCCTCTTGGTCAGATGTTGCAGGCATTGGAGACATGATATGATATTGACGACGTTTCCAAGCAATAGCGTTCATTGCATTTGACCTCATGTCTTCGATTTTACTTTTACCCTTTTCCACCAAGTACTGGTACCAATTGACAATGGCTGTGATTCGAGAAAACTGTTGGGCGTTTTGTTTCAAAATAAACTCGTTCGTCGTGTTAACAGTAGGCTGCTTGTACTCCGTCATGTTAACGCAGCATCTTCCAATGGTTACTTCCTCATATCTCCATTTTGCAACCTGACTTTTCTTAACGCCACAGTGCACTGAGAGCAGCGGGACAAATTTGGTTGCAATGAATCGGAAGGCCTCACGAATTTTGGTCTCATCATCCAGTTCGTCCTTGAAAACTTGATCCAGTTGTAGTTTGCAATAGACTCCCATAATAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAGTCCTTTGTGACATGTAG</pcr_primer_p1>
		<pcr_primer_p2>GTGGAAAAGGGTAAAAGTAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAAAGTCCTTTGTGACATGTAGCGTTGGTGTTCGTGGCGTTAGTGTTCGCGGCGTTACTTTCCTCGGCGAAAGAAGATTAACATCGTCCGGAATGATAATTTTGATAGGACTTTCCTCATCGTCCTCCTCTTGGTCAGATGTTGCAGGCATTGGAGACATGATATGATATTGACGACGTTTCCAAGCAATAGCGTTCATTGCATTTGACCTCATGTCTTCGATTTTACTTTTACCCTTTTCCAC</canonical_amplicon>
		<polymorphic_amplicon>CAAAGTCCTTTGTGACATGTAGCGTTGGTGTTCGTGGCGTTAGTGTTCGCGGCGTWACTTTCCTCGGCGAAAGAAGATTAACATCGTCCGGAATGATAATTTTGATAGGACTTTCCTCATCGTCCTCCTCTTGGTCAGATGTTGCAGGCATTGGAGACATGATATGATATTGACGACGTTTCCAAGCAATAGCGTTCATTGCATTTGACCTCATGTCTTCGATTTTACTTTTACCCTTTTCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17664</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>44177</contig_pos>
        <strand>+</strand>
        <context>GCATCTTTCC[C/T]ATTATTTTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAAGGCGAGACCACATGTCTTACTGTAGCTGAAGCTTCAGCATCTTTCC</left_flank>
        <right_flank>ATTATTTTTATCGATTACAAAGTCCTTTGTGACATGTAGCGTTGGTGTTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTAAACCAGTCGTGTTTGTATTCAGGAAACTCTTCTGGAAAACGTTTACCGCGAGCGTCTCGAGACATAATGTAGACTGAAAGAAAATTGGTATTCATTGTTGAAAGTTCAAATAAAGCACTTACTTTTGAACTCAGAATCAAGGATGTGTGGACGCTGAATTTTTTTATGAAGTCCGGTCATGATTTTGATTCCTCCCGGGAAGACTGAGATTCTTCTCTCAATTGCTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGTTATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATAGCGAATCTTCTTTTCATACTTTTCTTTTTCCGATGATATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGCTGAAGCTTCAGCATCTTTCCCATTATTTTTATCGATTACAAAGTCCTTTGTGACATGTAGCGTTGGTGTTCGTGGCGTTAGTGTTCGCGGCGTTACTTTCCTCGGCGAAAGAAGATTAACATCGTCCGGAATGATAATTTTGATAGGACTTTCCTCATCGTCCTCCTCTTGGTCAGATGTTGCAGGCATTGGAGACATGATATGATATTGACGACGTTTCCAAGCAATAGCGTTCATTGCATTTGACCTCATGTCTTCGATTTTACTTTTACCCTTTTCCACCAAGTACTGGTACCAATTGACAATGGCTGTGATTCGAGAAAACTGTTGGGCGTTTTGTTTCAAAATAAACTCGTTCGTCGTGTTAACAGTAGGCTGCTTGTACTCCGTCATGTTAACGCAGCATCTTCCAATGGTTACTTCCTCATATCTCCATTTTGCAACCTGACTTTTCTTAACGCCACAGTGCACTGAGAGCAGCGGGACAAATTTGGTTGCAATGAATCGGAAGGCCTCACGAA</canonical>
            <polymorphic>ACTTAAACCAGTCGTGTTTGTATTCAGGAAACTCTTCTGGAAAACGTTTACCGCGAGCGTCTCGAGACATAATGTAGACTGAAAGAAAATTGGTATTCATTGTTGAAAGTTCAAATAAAGCACTTACTTTTGAACTCAGAATCAAGGATGTGTGGACGCTGAATTTTTTTATGAAGTCCGGTCATGATTTTGATTCCTCCCGGGAAGACTGAGATTCTTCTCTCAATTGCTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGTTATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATAGCGAATCTTCTTTTCATACTTTTCTTTTTCCGATGATATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGCTGAAGCTTCAGCATCTTTCCYATTATTTTTATCGATTACAAAGTCCTTTGTGACATGTAGCGTTGGTGTTCGTGGCGTTAGTGTTCGCGGCGTTACTTTCCTCGGCGAAAGAAGATTAACATCGTCCGGAATGATAATTTTGATAGGACTTTCCTCATCGTCCTCCTCTTGGTCAGATGTTGCAGGCATTGGAGACATGATATGATATTGACGACGTTTCCAAGCAATAGCGTTCATTGCATTTGACCTCATGTCTTCGATTTTACTTTTACCCTTTTCCACCAAGTACTGGTACCAATTGACAATGGCTGTGATTCGAGAAAACTGTTGGGCGTTTTGTTTCAAAATAAACTCGTTCGTCGTGTTAACAGTAGGCTGCTTGTACTCCGTCATGTTAACGCAGCATCTTCCAATGGTTACTTCCTCATATCTCCATTTTGCAACCTGACTTTTCTTAACGCCACAGTGCACTGAGAGCAGCGGGACAAATTTGGTTGCAATGAATCGGAAGGCCTCACGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGTATGATCCAGACACGTAA</pcr_primer_p1>
		<pcr_primer_p2>CGGACGATGTTAATCTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGCTGAAGCTTCAGCATCTTTCCCATTATTTTTATCGATTACAAAGTCCTTTGTGACATGTAGCGTTGGTGTTCGTGGCGTTAGTGTTCGCGGCGTTACTTTCCTCGGCGAAAGAAGATTAACATCGTCCG</canonical_amplicon>
		<polymorphic_amplicon>GTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGCTGAAGCTTCAGCATCTTTCCYATTATTTTTATCGATTACAAAGTCCTTTGTGACATGTAGCGTTGGTGTTCGTGGCGTTAGTGTTCGCGGCGTTACTTTCCTCGGCGAAAGAAGATTAACATCGTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17665</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>44098</contig_pos>
        <strand>+</strand>
        <context>CTCTCCTMGT[G/T]GCCCGATATT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGT</left_flank>
        <right_flank>GCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATTTCATGAGGGAAGCTGTTCAAAATTGTGTCCTCATACGCCTGGTACTTTCTTGGTTCAATTGAAATGCGTGTGTACTTAAACCAGTCGTGTTTGTATTCAGGAAACTCTTCTGGAAAACGTTTACCGCGAGCGTCTCGAGACATAATGTAGACTGAAAGAAAATTGGTATTCATTGTTGAAAGTTCAAATAAAGCACTTACTTTTGAACTCAGAATCAAGGATGTGTGGACGCTGAATTTTTTTATGAAGTCCGGTCATGATTTTGATTCCTCCCGGGAAGACTGAGATTCTTCTCTCAATTGCTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGTTATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATAGCGAATCTTCTTTTCATACTTTTCTTTTTCCGATGATATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGCTGAAGCTTCAGCATCTTTCCCATTATTTTTATCGATTACAAAGTCCTTTGTGACATGTAGCGTTGGTGTTCGTGGCGTTAGTGTTCGCGGCGTTACTTTCCTCGGCGAAAGAAGATTAACATCGTCCGGAATGATAATTTTGATAGGACTTTCCTCATCGTCCTCCTCTTGGTCAGATGTTGCAGGCATTGGAGACATGATATGATATTGACGACGTTTCCAAGCAATAGCGTTCATTGCATTTGACCTCATGTCTTCGATTTTACTTTTACCCTTTTCCACCAAGTACTGGTACCAATTGACAATGGCTGTGATTCGAGAAAACTGTTGGGCGTTTTGTTTCAAAATAAACTCGTTCGTCGTGTTAACAGTAGGCTGCTTGTACTCCGTCATGTTAACGCAGCATCTTCCAATGGTTACTTCCTCATATCTCCATTTTGCA</canonical>
            <polymorphic>ATTATTTCATGAGGGAAGCTGTTCAAAATTGTGTCCTCATACGCCTGGTACTTTCTTGGTTCAATTGAAATGCGTGTGTACTTAAACCAGTCGTGTTTGTATTCAGGAAACTCTTCTGGAAAACGTTTACCGCGAGCGTCTCGAGACATAATGTAGACTGAAAGAAAATTGGTATTCATTGTTGAAAGTTCAAATAAAGCACTTACTTTTGAACTCAGAATCAAGGATGTGTGGACGCTGAATTTTTTTATGAAGTCCGGTCATGATTTTGATTCCTCCCGGGAAGACTGAGATTCTTCTCTCAATTGCTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGTTATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATAGCGAATCTTCTTTTCATACTTTTCTTTTTCCGATGATATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGTKGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGCTGAAGCTTCAGCATCTTTCCCATTATTTTTATCGATTACAAAGTCCTTTGTGACATGTAGCGTTGGTGTTCGTGGCGTTAGTGTTCGCGGCGTTACTTTCCTCGGCGAAAGAAGATTAACATCGTCCGGAATGATAATTTTGATAGGACTTTCCTCATCGTCCTCCTCTTGGTCAGATGTTGCAGGCATTGGAGACATGATATGATATTGACGACGTTTCCAAGCAATAGCGTTCATTGCATTTGACCTCATGTCTTCGATTTTACTTTTACCCTTTTCCACCAAGTACTGGTACCAATTGACAATGGCTGTGATTCGAGAAAACTGTTGGGCGTTTTGTTTCAAAATAAACTCGTTCGTCGTGTTAACAGTAGGCTGCTTGTACTCCGTCATGTTAACGCAGCATCTTCCAATGGTTACTTCCTCATATCTCCATTTTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTCCAAAGATTATTGATGAAC</pcr_primer_p1>
		<pcr_primer_p2>GCTACAGTAAGACATGTGGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGTTATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATAGCGAATCTTCTTTTCATACTTTTCTTTTTCCGATGATATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGC</canonical_amplicon>
		<polymorphic_amplicon>CTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGTTATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATAGCGAATCTTCTTTTCATACTTTTCTTTTTCCGATGATATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGTKGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17666</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>44095</contig_pos>
        <strand>+</strand>
        <context>CACCTCTCCT[A/C]GTKGCCCGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCT</left_flank>
        <right_flank>GTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACATTATTTCATGAGGGAAGCTGTTCAAAATTGTGTCCTCATACGCCTGGTACTTTCTTGGTTCAATTGAAATGCGTGTGTACTTAAACCAGTCGTGTTTGTATTCAGGAAACTCTTCTGGAAAACGTTTACCGCGAGCGTCTCGAGACATAATGTAGACTGAAAGAAAATTGGTATTCATTGTTGAAAGTTCAAATAAAGCACTTACTTTTGAACTCAGAATCAAGGATGTGTGGACGCTGAATTTTTTTATGAAGTCCGGTCATGATTTTGATTCCTCCCGGGAAGACTGAGATTCTTCTCTCAATTGCTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGTTATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATAGCGAATCTTCTTTTCATACTTTTCTTTTTCCGATGATATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGCTGAAGCTTCAGCATCTTTCCCATTATTTTTATCGATTACAAAGTCCTTTGTGACATGTAGCGTTGGTGTTCGTGGCGTTAGTGTTCGCGGCGTTACTTTCCTCGGCGAAAGAAGATTAACATCGTCCGGAATGATAATTTTGATAGGACTTTCCTCATCGTCCTCCTCTTGGTCAGATGTTGCAGGCATTGGAGACATGATATGATATTGACGACGTTTCCAAGCAATAGCGTTCATTGCATTTGACCTCATGTCTTCGATTTTACTTTTACCCTTTTCCACCAAGTACTGGTACCAATTGACAATGGCTGTGATTCGAGAAAACTGTTGGGCGTTTTGTTTCAAAATAAACTCGTTCGTCGTGTTAACAGTAGGCTGCTTGTACTCCGTCATGTTAACGCAGCATCTTCCAATGGTTACTTCCTCATATCTCCATTTT</canonical>
            <polymorphic>CACATTATTTCATGAGGGAAGCTGTTCAAAATTGTGTCCTCATACGCCTGGTACTTTCTTGGTTCAATTGAAATGCGTGTGTACTTAAACCAGTCGTGTTTGTATTCAGGAAACTCTTCTGGAAAACGTTTACCGCGAGCGTCTCGAGACATAATGTAGACTGAAAGAAAATTGGTATTCATTGTTGAAAGTTCAAATAAAGCACTTACTTTTGAACTCAGAATCAAGGATGTGTGGACGCTGAATTTTTTTATGAAGTCCGGTCATGATTTTGATTCCTCCCGGGAAGACTGAGATTCTTCTCTCAATTGCTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGTTATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATAGCGAATCTTCTTTTCATACTTTTCTTTTTCCGATGATATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTMGTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGCTGAAGCTTCAGCATCTTTCCCATTATTTTTATCGATTACAAAGTCCTTTGTGACATGTAGCGTTGGTGTTCGTGGCGTTAGTGTTCGCGGCGTTACTTTCCTCGGCGAAAGAAGATTAACATCGTCCGGAATGATAATTTTGATAGGACTTTCCTCATCGTCCTCCTCTTGGTCAGATGTTGCAGGCATTGGAGACATGATATGATATTGACGACGTTTCCAAGCAATAGCGTTCATTGCATTTGACCTCATGTCTTCGATTTTACTTTTACCCTTTTCCACCAAGTACTGGTACCAATTGACAATGGCTGTGATTCGAGAAAACTGTTGGGCGTTTTGTTTCAAAATAAACTCGTTCGTCGTGTTAACAGTAGGCTGCTTGTACTCCGTCATGTTAACGCAGCATCTTCCAATGGTTACTTCCTCATATCTCCATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTCCAAAGATTATTGATGAAC</pcr_primer_p1>
		<pcr_primer_p2>GCTACAGTAAGACATGTGGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGTTATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATAGCGAATCTTCTTTTCATACTTTTCTTTTTCCGATGATATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGC</canonical_amplicon>
		<polymorphic_amplicon>CTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGTTATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATAGCGAATCTTCTTTTCATACTTTTCTTTTTCCGATGATATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTMGTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17667</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>44039</contig_pos>
        <strand>+</strand>
        <context>TTYTCCGATG[A/G]TATGTTGTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGTTCTATCAAATAGCGAATCTTCTTTTCATACTTTTCTTTTTCCGATG</left_flank>
        <right_flank>TATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGCGGGCCGAATTGTCGGGGCACTGTCCATTGCATTTTGCGGAATTCCGTTTTGCACATTATTTCATGAGGGAAGCTGTTCAAAATTGTGTCCTCATACGCCTGGTACTTTCTTGGTTCAATTGAAATGCGTGTGTACTTAAACCAGTCGTGTTTGTATTCAGGAAACTCTTCTGGAAAACGTTTACCGCGAGCGTCTCGAGACATAATGTAGACTGAAAGAAAATTGGTATTCATTGTTGAAAGTTCAAATAAAGCACTTACTTTTGAACTCAGAATCAAGGATGTGTGGACGCTGAATTTTTTTATGAAGTCCGGTCATGATTTTGATTCCTCCCGGGAAGACTGAGATTCTTCTCTCAATTGCTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGTTATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATAGCGAATCTTCTTTTCATACTTTTCTTTTTCCGATGATATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGCTGAAGCTTCAGCATCTTTCCCATTATTTTTATCGATTACAAAGTCCTTTGTGACATGTAGCGTTGGTGTTCGTGGCGTTAGTGTTCGCGGCGTTACTTTCCTCGGCGAAAGAAGATTAACATCGTCCGGAATGATAATTTTGATAGGACTTTCCTCATCGTCCTCCTCTTGGTCAGATGTTGCAGGCATTGGAGACATGATATGATATTGACGACGTTTCCAAGCAATAGCGTTCATTGCATTTGACCTCATGTCTTCGATTTTACTTTTACCCTTTTCCACCAAGTACTGGTACCAATTGACAATGGCTGTGATTCGAGAAAACTGTTGGGCGTTTTGTTTCAAAATAAACTCGTTCGTCGTGTTAACAGTAGGCTGCTTGT</canonical>
            <polymorphic>TCGGCGGGCCGAATTGTCGGGGCACTGTCCATTGCATTTTGCGGAATTCCGTTTTGCACATTATTTCATGAGGGAAGCTGTTCAAAATTGTGTCCTCATACGCCTGGTACTTTCTTGGTTCAATTGAAATGCGTGTGTACTTAAACCAGTCGTGTTTGTATTCAGGAAACTCTTCTGGAAAACGTTTACCGCGAGCGTCTCGAGACATAATGTAGACTGAAAGAAAATTGGTATTCATTGTTGAAAGTTCAAATAAAGCACTTACTTTTGAACTCAGAATCAAGGATGTGTGGACGCTGAATTTTTTTATGAAGTCCGGTCATGATTTTGATTCCTCCCGGGAAGACTGAGATTCTTCTCTCAATTGCTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGTTATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATAGCGAATCTTCTTTTCATACTTTTCTTTTTCCGATGRTATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGCTGAAGCTTCAGCATCTTTCCCATTATTTTTATCGATTACAAAGTCCTTTGTGACATGTAGCGTTGGTGTTCGTGGCGTTAGTGTTCGCGGCGTTACTTTCCTCGGCGAAAGAAGATTAACATCGTCCGGAATGATAATTTTGATAGGACTTTCCTCATCGTCCTCCTCTTGGTCAGATGTTGCAGGCATTGGAGACATGATATGATATTGACGACGTTTCCAAGCAATAGCGTTCATTGCATTTGACCTCATGTCTTCGATTTTACTTTTACCCTTTTCCACCAAGTACTGGTACCAATTGACAATGGCTGTGATTCGAGAAAACTGTTGGGCGTTTTGTTTCAAAATAAACTCGTTCGTCGTGTTAACAGTAGGCTGCTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTCCAAAGATTATTGATGAAC</pcr_primer_p1>
		<pcr_primer_p2>GCTACAGTAAGACATGTGGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGTTATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATAGCGAATCTTCTTTTCATACTTTTCTTTTTCCGATGATATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGC</canonical_amplicon>
		<polymorphic_amplicon>CTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGTTATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATAGCGAATCTTCTTTTCATACTTTTCTTTTTCCGATGRTATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17668</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>44031</contig_pos>
        <strand>+</strand>
        <context>ACTTTTCTTT[C/T]TCCGATGRTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTCTCGTCGTTCTATCAAATAGCGAATCTTCTTTTCATACTTTTCTTT</left_flank>
        <right_flank>TCCGATGATATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTTTCTTCGGCGGGCCGAATTGTCGGGGCACTGTCCATTGCATTTTGCGGAATTCCGTTTTGCACATTATTTCATGAGGGAAGCTGTTCAAAATTGTGTCCTCATACGCCTGGTACTTTCTTGGTTCAATTGAAATGCGTGTGTACTTAAACCAGTCGTGTTTGTATTCAGGAAACTCTTCTGGAAAACGTTTACCGCGAGCGTCTCGAGACATAATGTAGACTGAAAGAAAATTGGTATTCATTGTTGAAAGTTCAAATAAAGCACTTACTTTTGAACTCAGAATCAAGGATGTGTGGACGCTGAATTTTTTTATGAAGTCCGGTCATGATTTTGATTCCTCCCGGGAAGACTGAGATTCTTCTCTCAATTGCTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGTTATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATAGCGAATCTTCTTTTCATACTTTTCTTTTTCCGATGATATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGCTGAAGCTTCAGCATCTTTCCCATTATTTTTATCGATTACAAAGTCCTTTGTGACATGTAGCGTTGGTGTTCGTGGCGTTAGTGTTCGCGGCGTTACTTTCCTCGGCGAAAGAAGATTAACATCGTCCGGAATGATAATTTTGATAGGACTTTCCTCATCGTCCTCCTCTTGGTCAGATGTTGCAGGCATTGGAGACATGATATGATATTGACGACGTTTCCAAGCAATAGCGTTCATTGCATTTGACCTCATGTCTTCGATTTTACTTTTACCCTTTTCCACCAAGTACTGGTACCAATTGACAATGGCTGTGATTCGAGAAAACTGTTGGGCGTTTTGTTTCAAAATAAACTCGTTCGTCGTGTTAACAGTAGG</canonical>
            <polymorphic>GGCTTTCTTCGGCGGGCCGAATTGTCGGGGCACTGTCCATTGCATTTTGCGGAATTCCGTTTTGCACATTATTTCATGAGGGAAGCTGTTCAAAATTGTGTCCTCATACGCCTGGTACTTTCTTGGTTCAATTGAAATGCGTGTGTACTTAAACCAGTCGTGTTTGTATTCAGGAAACTCTTCTGGAAAACGTTTACCGCGAGCGTCTCGAGACATAATGTAGACTGAAAGAAAATTGGTATTCATTGTTGAAAGTTCAAATAAAGCACTTACTTTTGAACTCAGAATCAAGGATGTGTGGACGCTGAATTTTTTTATGAAGTCCGGTCATGATTTTGATTCCTCCCGGGAAGACTGAGATTCTTCTCTCAATTGCTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGTTATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATAGCGAATCTTCTTTTCATACTTTTCTTTYTCCGATGATATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGCTGAAGCTTCAGCATCTTTCCCATTATTTTTATCGATTACAAAGTCCTTTGTGACATGTAGCGTTGGTGTTCGTGGCGTTAGTGTTCGCGGCGTTACTTTCCTCGGCGAAAGAAGATTAACATCGTCCGGAATGATAATTTTGATAGGACTTTCCTCATCGTCCTCCTCTTGGTCAGATGTTGCAGGCATTGGAGACATGATATGATATTGACGACGTTTCCAAGCAATAGCGTTCATTGCATTTGACCTCATGTCTTCGATTTTACTTTTACCCTTTTCCACCAAGTACTGGTACCAATTGACAATGGCTGTGATTCGAGAAAACTGTTGGGCGTTTTGTTTCAAAATAAACTCGTTCGTCGTGTTAACAGTAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTCCAAAGATTATTGATGAAC</pcr_primer_p1>
		<pcr_primer_p2>GCTACAGTAAGACATGTGGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGTTATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATAGCGAATCTTCTTTTCATACTTTTCTTTTTCCGATGATATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGC</canonical_amplicon>
		<polymorphic_amplicon>CTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGTTATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATAGCGAATCTTCTTTTCATACTTTTCTTTYTCCGATGATATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17669</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>44004</contig_pos>
        <strand>+</strand>
        <context>CTATCAAATA[C/G]CGAATCTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATA</left_flank>
        <right_flank>CGAATCTTCTTTTCATACTTTTCTTTTTCCGATGATATGTTGTATGATCC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATCCAAATCAGTGAAAAACTCAATGGCTTTCTTCGGCGGGCCGAATTGTCGGGGCACTGTCCATTGCATTTTGCGGAATTCCGTTTTGCACATTATTTCATGAGGGAAGCTGTTCAAAATTGTGTCCTCATACGCCTGGTACTTTCTTGGTTCAATTGAAATGCGTGTGTACTTAAACCAGTCGTGTTTGTATTCAGGAAACTCTTCTGGAAAACGTTTACCGCGAGCGTCTCGAGACATAATGTAGACTGAAAGAAAATTGGTATTCATTGTTGAAAGTTCAAATAAAGCACTTACTTTTGAACTCAGAATCAAGGATGTGTGGACGCTGAATTTTTTTATGAAGTCCGGTCATGATTTTGATTCCTCCCGGGAAGACTGAGATTCTTCTCTCAATTGCTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGTTATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATAGCGAATCTTCTTTTCATACTTTTCTTTTTCCGATGATATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGCTGAAGCTTCAGCATCTTTCCCATTATTTTTATCGATTACAAAGTCCTTTGTGACATGTAGCGTTGGTGTTCGTGGCGTTAGTGTTCGCGGCGTTACTTTCCTCGGCGAAAGAAGATTAACATCGTCCGGAATGATAATTTTGATAGGACTTTCCTCATCGTCCTCCTCTTGGTCAGATGTTGCAGGCATTGGAGACATGATATGATATTGACGACGTTTCCAAGCAATAGCGTTCATTGCATTTGACCTCATGTCTTCGATTTTACTTTTACCCTTTTCCACCAAGTACTGGTACCAATTGACAATGGCTGTGATTCGAGAAAACTGTTGGGCGTTTTGTTTCAAAAT</canonical>
            <polymorphic>TTTATCCAAATCAGTGAAAAACTCAATGGCTTTCTTCGGCGGGCCGAATTGTCGGGGCACTGTCCATTGCATTTTGCGGAATTCCGTTTTGCACATTATTTCATGAGGGAAGCTGTTCAAAATTGTGTCCTCATACGCCTGGTACTTTCTTGGTTCAATTGAAATGCGTGTGTACTTAAACCAGTCGTGTTTGTATTCAGGAAACTCTTCTGGAAAACGTTTACCGCGAGCGTCTCGAGACATAATGTAGACTGAAAGAAAATTGGTATTCATTGTTGAAAGTTCAAATAAAGCACTTACTTTTGAACTCAGAATCAAGGATGTGTGGACGCTGAATTTTTTTATGAAGTCCGGTCATGATTTTGATTCCTCCCGGGAAGACTGAGATTCTTCTCTCAATTGCTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGTTATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATASCGAATCTTCTTTTCATACTTTTCTTTTTCCGATGATATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGCTGAAGCTTCAGCATCTTTCCCATTATTTTTATCGATTACAAAGTCCTTTGTGACATGTAGCGTTGGTGTTCGTGGCGTTAGTGTTCGCGGCGTTACTTTCCTCGGCGAAAGAAGATTAACATCGTCCGGAATGATAATTTTGATAGGACTTTCCTCATCGTCCTCCTCTTGGTCAGATGTTGCAGGCATTGGAGACATGATATGATATTGACGACGTTTCCAAGCAATAGCGTTCATTGCATTTGACCTCATGTCTTCGATTTTACTTTTACCCTTTTCCACCAAGTACTGGTACCAATTGACAATGGCTGTGATTCGAGAAAACTGTTGGGCGTTTTGTTTCAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTCCAAAGATTATTGATGAAC</pcr_primer_p1>
		<pcr_primer_p2>GCTACAGTAAGACATGTGGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGTTATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATAGCGAATCTTCTTTTCATACTTTTCTTTTTCCGATGATATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGC</canonical_amplicon>
		<polymorphic_amplicon>CTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGTTATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATASCGAATCTTCTTTTCATACTTTTCTTTTTCCGATGATATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17670</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>43955</contig_pos>
        <strand>+</strand>
        <context>GGAATATTGT[A/T]ATTCAGCGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGCTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGT</left_flank>
        <right_flank>ATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATAGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAGTTAGGTCACTTACAGTATTGTTTGTACAGCTCCAAATCTCGGTATTTATCCAAATCAGTGAAAAACTCAATGGCTTTCTTCGGCGGGCCGAATTGTCGGGGCACTGTCCATTGCATTTTGCGGAATTCCGTTTTGCACATTATTTCATGAGGGAAGCTGTTCAAAATTGTGTCCTCATACGCCTGGTACTTTCTTGGTTCAATTGAAATGCGTGTGTACTTAAACCAGTCGTGTTTGTATTCAGGAAACTCTTCTGGAAAACGTTTACCGCGAGCGTCTCGAGACATAATGTAGACTGAAAGAAAATTGGTATTCATTGTTGAAAGTTCAAATAAAGCACTTACTTTTGAACTCAGAATCAAGGATGTGTGGACGCTGAATTTTTTTATGAAGTCCGGTCATGATTTTGATTCCTCCCGGGAAGACTGAGATTCTTCTCTCAATTGCTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGTTATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATAGCGAATCTTCTTTTCATACTTTTCTTTTTCCGATGATATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGCTGAAGCTTCAGCATCTTTCCCATTATTTTTATCGATTACAAAGTCCTTTGTGACATGTAGCGTTGGTGTTCGTGGCGTTAGTGTTCGCGGCGTTACTTTCCTCGGCGAAAGAAGATTAACATCGTCCGGAATGATAATTTTGATAGGACTTTCCTCATCGTCCTCCTCTTGGTCAGATGTTGCAGGCATTGGAGACATGATATGATATTGACGACGTTTCCAAGCAATAGCGTTCATTGCATTTGACCTCATGTCTTCGATTTTACTTTTACCCTTTTCCACCAAGTACTGGTACCAAT</canonical>
            <polymorphic>GAGAGTTAGGTCACTTACAGTATTGTTTGTACAGCTCCAAATCTCGGTATTTATCCAAATCAGTGAAAAACTCAATGGCTTTCTTCGGCGGGCCGAATTGTCGGGGCACTGTCCATTGCATTTTGCGGAATTCCGTTTTGCACATTATTTCATGAGGGAAGCTGTTCAAAATTGTGTCCTCATACGCCTGGTACTTTCTTGGTTCAATTGAAATGCGTGTGTACTTAAACCAGTCGTGTTTGTATTCAGGAAACTCTTCTGGAAAACGTTTACCGCGAGCGTCTCGAGACATAATGTAGACTGAAAGAAAATTGGTATTCATTGTTGAAAGTTCAAATAAAGCACTTACTTTTGAACTCAGAATCAAGGATGTGTGGACGCTGAATTTTTTTATGAAGTCCGGTCATGATTTTGATTCCTCCCGGGAAGACTGAGATTCTTCTCTCAATTGCTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGTWATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATAGCGAATCTTCTTTTCATACTTTTCTTTTTCCGATGATATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGCTGAAGCTTCAGCATCTTTCCCATTATTTTTATCGATTACAAAGTCCTTTGTGACATGTAGCGTTGGTGTTCGTGGCGTTAGTGTTCGCGGCGTTACTTTCCTCGGCGAAAGAAGATTAACATCGTCCGGAATGATAATTTTGATAGGACTTTCCTCATCGTCCTCCTCTTGGTCAGATGTTGCAGGCATTGGAGACATGATATGATATTGACGACGTTTCCAAGCAATAGCGTTCATTGCATTTGACCTCATGTCTTCGATTTTACTTTTACCCTTTTCCACCAAGTACTGGTACCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGCTCTCCAAAGATTATTGAT</pcr_primer_p1>
		<pcr_primer_p2>GCTACAGTAAGACATGTGGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ATTGCTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGTTATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATAGCGAATCTTCTTTTCATACTTTTCTTTTTCCGATGATATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGC</canonical_amplicon>
		<polymorphic_amplicon>ATTGCTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGTWATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATAGCGAATCTTCTTTTCATACTTTTCTTTTTCCGATGATATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17671</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>59872</contig_pos>
        <strand>+</strand>
        <context>TTGTGTTCTG[A/G]TGTTCCCGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACTGCTCTTGTTGCAAAAAGTGCATTACATCACGTAAGCTTGTGTTCTG</left_flank>
        <right_flank>TGTTCCCGTATTTCAATGCACTTTCGAAATATCTGATCAGAATGAAGCGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTTTTGTCGCACTTTATTTGTAGCATCTTATCTTTTTGCGATAGCGCGACAAATGTGGTGCACTTTTGAAAGTGCGTTGATCCTTGTGAACACCTCAAACATCAATTATAAGCAGGAACGAAAATTCATCTTTTGACGATCTGAAATCAACATATGTATTATCTTACTCTATGCGTTTTTATCATGTTCATGTCACAATAGGTATTCGTTCATTTTCTACACACCATCTTACTGGGGTTCAATTTTTTATCTGTAATCTGTTTATCATGATTTTTTCTTTTTTCTTACAATTATCGAAATCGTAAATAAATAAATTAATGTATAAGGAATGGAGTTGTTCTGCTAATAATAATCAAAGCAGATTGATTACAGTTTCAAACACCAAAAACACTGAAATAGGCCTAAATTTACGTGCCGTTGCGATCCTTCTTTTCTATTATGAGTGATCACTGCTCTTGTTGCAAAAAGTGCATTACATCACGTAAGCTTGTGTTCTGATGTTCCCGTATTTCAATGCACTTTCGAAATATCTGATCAGAATGAAGCGGTGTTGGTTCGGGAGGAACTTCGATTTCAGTGTCACACAAGTGTCTTTTTAGAGGCATATCTAAAAAATTTTTAAACCAATTTCCAGCTTCTATAATAAATCCGTTTTTATTTCATTTTAATTAGCGAATTGTCATTGGTTCTGATGCTAGTGACCTGTTTGTGAAATATCTTTCGAGCAATATTCTTACAAAGAAGTGTTCCTAGATCGGAAGAACTACAAAAATCAAGAAAAAAAACATTCCAGAGAAAAATAAAGTATTCAGGAAATCTCAAAAAAGTTTCACACATTTCCAGGTCATCGACATTTTGGATTGACTCGATTTAGTTGAAATTTAGATTGTTTTCCAGTACTTATTTCAATATACATTGACCAGCACGTCATTTCTCGAATCATTCTTATTCCTTTTTCAGGCTTTTTTAGTTGCGGAAAAAATAATACATATTTGTTC</canonical>
            <polymorphic>TACTTTTGTCGCACTTTATTTGTAGCATCTTATCTTTTTGCGATAGCGCGACAAATGTGGTGCACTTTTGAAAGTGCGTTGATCCTTGTGAACACCTCAAACATCAATTATAAGCAGGAACGAAAATTCATCTTTTGACGATCTGAAATCAACATATGTATTATCTTACTCTATGCGTTTTTATCATGTTCATGTCACAATAGGTATTCGTTCATTTTCTACACACCATCTTACTGGGGTTCAATTTTTTATCTGTAATCTGTTTATCATGATTTTTTCTTTTTTCTTACAATTATCGAAATCGTAAATAAATAAATTAATGTATAAGGAATGGAGTTGTTCTGCTAATAATAATCAAAGCAGATTGATTACAGTTTCAAACACCAAAAACACTGAAATAGGCCTAAATTTACGTGCCGTTGCGATCCTTCTTTTCTATTATGAGTGATCACTGCTCTTGTTGCAAAAAGTGCATTACATCACGTAAGCTTGTGTTCTGRTGTTCCCGTATTTCAATGCACTTTCGAAATATCTGATCAGAATGAAGCGGTGTTGGTTCGGGAGGAACTTCGATTTCAGTGTCACACAAGTGTCTTTTTAGAGGCATATCTAAAAAATTTTTAAACCAATTTCCAGCTTCTATAATAAATCCGTTTTTATTTCATTTTAATTAGCGAATTGTCATTGGTTCTGATGCTAGTGACCTGTTTGTGAAATATCTTTCGAGCAATATTCTTACAAAGAAGTGTTCCTAGATCGGAAGAACTACAAAAATCAAGAAAAAAAACATTCCAGAGAAAAATAAAGTATTCAGGAAATCTCAAAAAAGTTTCACACATTTCCAGGTCATCGACATTTTGGATTGACTCGATTTAGTTGAAATTTAGATTGTTTTCCAGTACTTATTTCAATATACATTGACCAGCACGTCATTTCTCGAATCATTCTTATTCCTTTTTCAGGCTTTTTTAGTTGCGGAAAAAATAATACATATTTGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>354 241 153 144 67 36 5</canonical_bands>
                <polymorphic_bands>390 241 153 144 67 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAAAGCAGATTGATTACAGTT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGACACTTGTGTGACACTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATCAAAGCAGATTGATTACAGTTTCAAACACCAAAAACACTGAAATAGGCCTAAATTTACGTGCCGTTGCGATCCTTCTTTTCTATTATGAGTGATCACTGCTCTTGTTGCAAAAAGTGCATTACATCACGTAAGCTTGTGTTCTGATGTTCCCGTATTTCAATGCACTTTCGAAATATCTGATCAGAATGAAGCGGTGTTGGTTCGGGAGGAACTTCGATTTCAGTGTCACACAAGTGTCTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATCAAAGCAGATTGATTACAGTTTCAAACACCAAAAACACTGAAATAGGCCTAAATTTACGTGCCGTTGCGATCCTTCTTTTCTATTATGAGTGATCACTGCTCTTGTTGCAAAAAGTGCATTACATCACGTAAGCTTGTGTTCTGRTGTTCCCGTATTTCAATGCACTTTCGAAATATCTGATCAGAATGAAGCGGTGTTGGTTCGGGAGGAACTTCGATTTCAGTGTCACACAAGTGTCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17672</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>59918</contig_pos>
        <strand>+</strand>
        <context>ATCAGAATGA[A/C]GCGGTGTTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTGATGTTCCCGTATTTCAATGCACTTTCGAAATATCTGATCAGAATGA</left_flank>
        <right_flank>GCGGTGTTGGTTCGGGAGGAACTTCGATTTCAGTGTCACACAAGTGTCTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCGACAAATGTGGTGCACTTTTGAAAGTGCGTTGATCCTTGTGAACACCTCAAACATCAATTATAAGCAGGAACGAAAATTCATCTTTTGACGATCTGAAATCAACATATGTATTATCTTACTCTATGCGTTTTTATCATGTTCATGTCACAATAGGTATTCGTTCATTTTCTACACACCATCTTACTGGGGTTCAATTTTTTATCTGTAATCTGTTTATCATGATTTTTTCTTTTTTCTTACAATTATCGAAATCGTAAATAAATAAATTAATGTATAAGGAATGGAGTTGTTCTGCTAATAATAATCAAAGCAGATTGATTACAGTTTCAAACACCAAAAACACTGAAATAGGCCTAAATTTACGTGCCGTTGCGATCCTTCTTTTCTATTATGAGTGATCACTGCTCTTGTTGCAAAAAGTGCATTACATCACGTAAGCTTGTGTTCTGATGTTCCCGTATTTCAATGCACTTTCGAAATATCTGATCAGAATGAAGCGGTGTTGGTTCGGGAGGAACTTCGATTTCAGTGTCACACAAGTGTCTTTTTAGAGGCATATCTAAAAAATTTTTAAACCAATTTCCAGCTTCTATAATAAATCCGTTTTTATTTCATTTTAATTAGCGAATTGTCATTGGTTCTGATGCTAGTGACCTGTTTGTGAAATATCTTTCGAGCAATATTCTTACAAAGAAGTGTTCCTAGATCGGAAGAACTACAAAAATCAAGAAAAAAAACATTCCAGAGAAAAATAAAGTATTCAGGAAATCTCAAAAAAGTTTCACACATTTCCAGGTCATCGACATTTTGGATTGACTCGATTTAGTTGAAATTTAGATTGTTTTCCAGTACTTATTTCAATATACATTGACCAGCACGTCATTTCTCGAATCATTCTTATTCCTTTTTCAGGCTTTTTTAGTTGCGGAAAAAATAATACATATTTGTTCTTTTCTGTTGTTGTTATCTGAACGAAATTAACGAGTTACAAGTTTT</canonical>
            <polymorphic>CGCGACAAATGTGGTGCACTTTTGAAAGTGCGTTGATCCTTGTGAACACCTCAAACATCAATTATAAGCAGGAACGAAAATTCATCTTTTGACGATCTGAAATCAACATATGTATTATCTTACTCTATGCGTTTTTATCATGTTCATGTCACAATAGGTATTCGTTCATTTTCTACACACCATCTTACTGGGGTTCAATTTTTTATCTGTAATCTGTTTATCATGATTTTTTCTTTTTTCTTACAATTATCGAAATCGTAAATAAATAAATTAATGTATAAGGAATGGAGTTGTTCTGCTAATAATAATCAAAGCAGATTGATTACAGTTTCAAACACCAAAAACACTGAAATAGGCCTAAATTTACGTGCCGTTGCGATCCTTCTTTTCTATTATGAGTGATCACTGCTCTTGTTGCAAAAAGTGCATTACATCACGTAAGCTTGTGTTCTGATGTTCCCGTATTTCAATGCACTTTCGAAATATCTGATCAGAATGAMGCGGTGTTGGTTCGGGAGGAACTTCGATTTCAGTGTCACACAAGTGTCTTTTTAGAGGCATATCTAAAAAATTTTTAAACCAATTTCCAGCTTCTATAATAAATCCGTTTTTATTTCATTTTAATTAGCGAATTGTCATTGGTTCTGATGCTAGTGACCTGTTTGTGAAATATCTTTCGAGCAATATTCTTACAAAGAAGTGTTCCTAGATCGGAAGAACTACAAAAATCAAGAAAAAAAACATTCCAGAGAAAAATAAAGTATTCAGGAAATCTCAAAAAAGTTTCACACATTTCCAGGTCATCGACATTTTGGATTGACTCGATTTAGTTGAAATTTAGATTGTTTTCCAGTACTTATTTCAATATACATTGACCAGCACGTCATTTCTCGAATCATTCTTATTCCTTTTTCAGGCTTTTTTAGTTGCGGAAAAAATAATACATATTTGTTCTTTTCTGTTGTTGTTATCTGAACGAAATTAACGAGTTACAAGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACATCACGTAAGCTTGTGTTC</pcr_primer_p1>
		<pcr_primer_p2>AAAGATATTTCACAAACAGGTCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TACATCACGTAAGCTTGTGTTCTGATGTTCCCGTATTTCAATGCACTTTCGAAATATCTGATCAGAATGAAGCGGTGTTGGTTCGGGAGGAACTTCGATTTCAGTGTCACACAAGTGTCTTTTTAGAGGCATATCTAAAAAATTTTTAAACCAATTTCCAGCTTCTATAATAAATCCGTTTTTATTTCATTTTAATTAGCGAATTGTCATTGGTTCTGATGCTAGTGACCTGTTTGTGAAATATCTTT</canonical_amplicon>
		<polymorphic_amplicon>TACATCACGTAAGCTTGTGTTCTGATGTTCCCGTATTTCAATGCACTTTCGAAATATCTGATCAGAATGAMGCGGTGTTGGTTCGGGAGGAACTTCGATTTCAGTGTCACACAAGTGTCTTTTTAGAGGCATATCTAAAAAATTTTTAAACCAATTTCCAGCTTCTATAATAAATCCGTTTTTATTTCATTTTAATTAGCGAATTGTCATTGGTTCTGATGCTAGTGACCTGTTTGTGAAATATCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17673</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>59974</contig_pos>
        <strand>+</strand>
        <context>GTCTTTTTAG[A/G]GGCATATCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTGGTTCGGGAGGAACTTCGATTTCAGTGTCACACAAGTGTCTTTTTAG</left_flank>
        <right_flank>GGCATATCTAAAAAATTTTTAAACCAATTTCCAGCTTCTATAATAAATCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAATTATAAGCAGGAACGAAAATTCATCTTTTGACGATCTGAAATCAACATATGTATTATCTTACTCTATGCGTTTTTATCATGTTCATGTCACAATAGGTATTCGTTCATTTTCTACACACCATCTTACTGGGGTTCAATTTTTTATCTGTAATCTGTTTATCATGATTTTTTCTTTTTTCTTACAATTATCGAAATCGTAAATAAATAAATTAATGTATAAGGAATGGAGTTGTTCTGCTAATAATAATCAAAGCAGATTGATTACAGTTTCAAACACCAAAAACACTGAAATAGGCCTAAATTTACGTGCCGTTGCGATCCTTCTTTTCTATTATGAGTGATCACTGCTCTTGTTGCAAAAAGTGCATTACATCACGTAAGCTTGTGTTCTGATGTTCCCGTATTTCAATGCACTTTCGAAATATCTGATCAGAATGAAGCGGTGTTGGTTCGGGAGGAACTTCGATTTCAGTGTCACACAAGTGTCTTTTTAGAGGCATATCTAAAAAATTTTTAAACCAATTTCCAGCTTCTATAATAAATCCGTTTTTATTTCATTTTAATTAGCGAATTGTCATTGGTTCTGATGCTAGTGACCTGTTTGTGAAATATCTTTCGAGCAATATTCTTACAAAGAAGTGTTCCTAGATCGGAAGAACTACAAAAATCAAGAAAAAAAACATTCCAGAGAAAAATAAAGTATTCAGGAAATCTCAAAAAAGTTTCACACATTTCCAGGTCATCGACATTTTGGATTGACTCGATTTAGTTGAAATTTAGATTGTTTTCCAGTACTTATTTCAATATACATTGACCAGCACGTCATTTCTCGAATCATTCTTATTCCTTTTTCAGGCTTTTTTAGTTGCGGAAAAAATAATACATATTTGTTCTTTTCTGTTGTTGTTATCTGAACGAAATTAACGAGTTACAAGTTTTCGACAAACGTTGTGTCTTACATTTAGCTCTGCTTATTTCGGAATTTTTCATGAACG</canonical>
            <polymorphic>ATCAATTATAAGCAGGAACGAAAATTCATCTTTTGACGATCTGAAATCAACATATGTATTATCTTACTCTATGCGTTTTTATCATGTTCATGTCACAATAGGTATTCGTTCATTTTCTACACACCATCTTACTGGGGTTCAATTTTTTATCTGTAATCTGTTTATCATGATTTTTTCTTTTTTCTTACAATTATCGAAATCGTAAATAAATAAATTAATGTATAAGGAATGGAGTTGTTCTGCTAATAATAATCAAAGCAGATTGATTACAGTTTCAAACACCAAAAACACTGAAATAGGCCTAAATTTACGTGCCGTTGCGATCCTTCTTTTCTATTATGAGTGATCACTGCTCTTGTTGCAAAAAGTGCATTACATCACGTAAGCTTGTGTTCTGATGTTCCCGTATTTCAATGCACTTTCGAAATATCTGATCAGAATGAAGCGGTGTTGGTTCGGGAGGAACTTCGATTTCAGTGTCACACAAGTGTCTTTTTAGRGGCATATCTAAAAAATTTTTAAACCAATTTCCAGCTTCTATAATAAATCCGTTTTTATTTCATTTTAATTAGCGAATTGTCATTGGTTCTGATGCTAGTGACCTGTTTGTGAAATATCTTTCGAGCAATATTCTTACAAAGAAGTGTTCCTAGATCGGAAGAACTACAAAAATCAAGAAAAAAAACATTCCAGAGAAAAATAAAGTATTCAGGAAATCTCAAAAAAGTTTCACACATTTCCAGGTCATCGACATTTTGGATTGACTCGATTTAGTTGAAATTTAGATTGTTTTCCAGTACTTATTTCAATATACATTGACCAGCACGTCATTTCTCGAATCATTCTTATTCCTTTTTCAGGCTTTTTTAGTTGCGGAAAAAATAATACATATTTGTTCTTTTCTGTTGTTGTTATCTGAACGAAATTAACGAGTTACAAGTTTTCGACAAACGTTGTGTCTTACATTTAGCTCTGCTTATTTCGGAATTTTTCATGAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACATCACGTAAGCTTGTGTTC</pcr_primer_p1>
		<pcr_primer_p2>AAAGATATTTCACAAACAGGTCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TACATCACGTAAGCTTGTGTTCTGATGTTCCCGTATTTCAATGCACTTTCGAAATATCTGATCAGAATGAAGCGGTGTTGGTTCGGGAGGAACTTCGATTTCAGTGTCACACAAGTGTCTTTTTAGAGGCATATCTAAAAAATTTTTAAACCAATTTCCAGCTTCTATAATAAATCCGTTTTTATTTCATTTTAATTAGCGAATTGTCATTGGTTCTGATGCTAGTGACCTGTTTGTGAAATATCTTT</canonical_amplicon>
		<polymorphic_amplicon>TACATCACGTAAGCTTGTGTTCTGATGTTCCCGTATTTCAATGCACTTTCGAAATATCTGATCAGAATGAAGCGGTGTTGGTTCGGGAGGAACTTCGATTTCAGTGTCACACAAGTGTCTTTTTAGRGGCATATCTAAAAAATTTTTAAACCAATTTCCAGCTTCTATAATAAATCCGTTTTTATTTCATTTTAATTAGCGAATTGTCATTGGTTCTGATGCTAGTGACCTGTTTGTGAAATATCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17674</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>59997</contig_pos>
        <strand>+</strand>
        <context>AAATTTTTAA[A/G]CCAATTTCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAGTGTCACACAAGTGTCTTTTTAGAGGCATATCTAAAAAATTTTTAA</left_flank>
        <right_flank>CCAATTTCCAGCTTCTATAATAAATCCGTTTTTATTTCATTTTAATTAGC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCATCTTTTGACGATCTGAAATCAACATATGTATTATCTTACTCTATGCGTTTTTATCATGTTCATGTCACAATAGGTATTCGTTCATTTTCTACACACCATCTTACTGGGGTTCAATTTTTTATCTGTAATCTGTTTATCATGATTTTTTCTTTTTTCTTACAATTATCGAAATCGTAAATAAATAAATTAATGTATAAGGAATGGAGTTGTTCTGCTAATAATAATCAAAGCAGATTGATTACAGTTTCAAACACCAAAAACACTGAAATAGGCCTAAATTTACGTGCCGTTGCGATCCTTCTTTTCTATTATGAGTGATCACTGCTCTTGTTGCAAAAAGTGCATTACATCACGTAAGCTTGTGTTCTGATGTTCCCGTATTTCAATGCACTTTCGAAATATCTGATCAGAATGAAGCGGTGTTGGTTCGGGAGGAACTTCGATTTCAGTGTCACACAAGTGTCTTTTTAGAGGCATATCTAAAAAATTTTTAAACCAATTTCCAGCTTCTATAATAAATCCGTTTTTATTTCATTTTAATTAGCGAATTGTCATTGGTTCTGATGCTAGTGACCTGTTTGTGAAATATCTTTCGAGCAATATTCTTACAAAGAAGTGTTCCTAGATCGGAAGAACTACAAAAATCAAGAAAAAAAACATTCCAGAGAAAAATAAAGTATTCAGGAAATCTCAAAAAAGTTTCACACATTTCCAGGTCATCGACATTTTGGATTGACTCGATTTAGTTGAAATTTAGATTGTTTTCCAGTACTTATTTCAATATACATTGACCAGCACGTCATTTCTCGAATCATTCTTATTCCTTTTTCAGGCTTTTTTAGTTGCGGAAAAAATAATACATATTTGTTCTTTTCTGTTGTTGTTATCTGAACGAAATTAACGAGTTACAAGTTTTCGACAAACGTTGTGTCTTACATTTAGCTCTGCTTATTTCGGAATTTTTCATGAACGACATCAAGAACTGGATTAGACTA</canonical>
            <polymorphic>ATTCATCTTTTGACGATCTGAAATCAACATATGTATTATCTTACTCTATGCGTTTTTATCATGTTCATGTCACAATAGGTATTCGTTCATTTTCTACACACCATCTTACTGGGGTTCAATTTTTTATCTGTAATCTGTTTATCATGATTTTTTCTTTTTTCTTACAATTATCGAAATCGTAAATAAATAAATTAATGTATAAGGAATGGAGTTGTTCTGCTAATAATAATCAAAGCAGATTGATTACAGTTTCAAACACCAAAAACACTGAAATAGGCCTAAATTTACGTGCCGTTGCGATCCTTCTTTTCTATTATGAGTGATCACTGCTCTTGTTGCAAAAAGTGCATTACATCACGTAAGCTTGTGTTCTGATGTTCCCGTATTTCAATGCACTTTCGAAATATCTGATCAGAATGAAGCGGTGTTGGTTCGGGAGGAACTTCGATTTCAGTGTCACACAAGTGTCTTTTTAGAGGCATATCTAAAAAATTTTTAARCCAATTTCCAGCTTCTATAATAAATCCGTTTTTATTTCATTTTAATTAGCGAATTGTCATTGGTTCTGATGCTAGTGACCTGTTTGTGAAATATCTTTCGAGCAATATTCTTACAAAGAAGTGTTCCTAGATCGGAAGAACTACAAAAATCAAGAAAAAAAACATTCCAGAGAAAAATAAAGTATTCAGGAAATCTCAAAAAAGTTTCACACATTTCCAGGTCATCGACATTTTGGATTGACTCGATTTAGTTGAAATTTAGATTGTTTTCCAGTACTTATTTCAATATACATTGACCAGCACGTCATTTCTCGAATCATTCTTATTCCTTTTTCAGGCTTTTTTAGTTGCGGAAAAAATAATACATATTTGTTCTTTTCTGTTGTTGTTATCTGAACGAAATTAACGAGTTACAAGTTTTCGACAAACGTTGTGTCTTACATTTAGCTCTGCTTATTTCGGAATTTTTCATGAACGACATCAAGAACTGGATTAGACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACATCACGTAAGCTTGTGTTC</pcr_primer_p1>
		<pcr_primer_p2>AAAGATATTTCACAAACAGGTCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TACATCACGTAAGCTTGTGTTCTGATGTTCCCGTATTTCAATGCACTTTCGAAATATCTGATCAGAATGAAGCGGTGTTGGTTCGGGAGGAACTTCGATTTCAGTGTCACACAAGTGTCTTTTTAGAGGCATATCTAAAAAATTTTTAAACCAATTTCCAGCTTCTATAATAAATCCGTTTTTATTTCATTTTAATTAGCGAATTGTCATTGGTTCTGATGCTAGTGACCTGTTTGTGAAATATCTTT</canonical_amplicon>
		<polymorphic_amplicon>TACATCACGTAAGCTTGTGTTCTGATGTTCCCGTATTTCAATGCACTTTCGAAATATCTGATCAGAATGAAGCGGTGTTGGTTCGGGAGGAACTTCGATTTCAGTGTCACACAAGTGTCTTTTTAGAGGCATATCTAAAAAATTTTTAARCCAATTTCCAGCTTCTATAATAAATCCGTTTTTATTTCATTTTAATTAGCGAATTGTCATTGGTTCTGATGCTAGTGACCTGTTTGTGAAATATCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17675</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>60031</contig_pos>
        <strand>+</strand>
        <context>ATCCGTTTTT[A/C]TTTCATTTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTAAAAAATTTTTAAACCAATTTCCAGCTTCTATAATAAATCCGTTTTT</left_flank>
        <right_flank>TTTCATTTTAATTAGCGAATTGTCATTGGTTCTGATGCTAGTGACCTGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATCTTACTCTATGCGTTTTTATCATGTTCATGTCACAATAGGTATTCGTTCATTTTCTACACACCATCTTACTGGGGTTCAATTTTTTATCTGTAATCTGTTTATCATGATTTTTTCTTTTTTCTTACAATTATCGAAATCGTAAATAAATAAATTAATGTATAAGGAATGGAGTTGTTCTGCTAATAATAATCAAAGCAGATTGATTACAGTTTCAAACACCAAAAACACTGAAATAGGCCTAAATTTACGTGCCGTTGCGATCCTTCTTTTCTATTATGAGTGATCACTGCTCTTGTTGCAAAAAGTGCATTACATCACGTAAGCTTGTGTTCTGATGTTCCCGTATTTCAATGCACTTTCGAAATATCTGATCAGAATGAAGCGGTGTTGGTTCGGGAGGAACTTCGATTTCAGTGTCACACAAGTGTCTTTTTAGAGGCATATCTAAAAAATTTTTAAACCAATTTCCAGCTTCTATAATAAATCCGTTTTTATTTCATTTTAATTAGCGAATTGTCATTGGTTCTGATGCTAGTGACCTGTTTGTGAAATATCTTTCGAGCAATATTCTTACAAAGAAGTGTTCCTAGATCGGAAGAACTACAAAAATCAAGAAAAAAAACATTCCAGAGAAAAATAAAGTATTCAGGAAATCTCAAAAAAGTTTCACACATTTCCAGGTCATCGACATTTTGGATTGACTCGATTTAGTTGAAATTTAGATTGTTTTCCAGTACTTATTTCAATATACATTGACCAGCACGTCATTTCTCGAATCATTCTTATTCCTTTTTCAGGCTTTTTTAGTTGCGGAAAAAATAATACATATTTGTTCTTTTCTGTTGTTGTTATCTGAACGAAATTAACGAGTTACAAGTTTTCGACAAACGTTGTGTCTTACATTTAGCTCTGCTTATTTCGGAATTTTTCATGAACGACATCAAGAACTGGATTAGACTAAATCGAATATGTTCTAGAAAAAGTCTGAATCAGA</canonical>
            <polymorphic>ATTATCTTACTCTATGCGTTTTTATCATGTTCATGTCACAATAGGTATTCGTTCATTTTCTACACACCATCTTACTGGGGTTCAATTTTTTATCTGTAATCTGTTTATCATGATTTTTTCTTTTTTCTTACAATTATCGAAATCGTAAATAAATAAATTAATGTATAAGGAATGGAGTTGTTCTGCTAATAATAATCAAAGCAGATTGATTACAGTTTCAAACACCAAAAACACTGAAATAGGCCTAAATTTACGTGCCGTTGCGATCCTTCTTTTCTATTATGAGTGATCACTGCTCTTGTTGCAAAAAGTGCATTACATCACGTAAGCTTGTGTTCTGATGTTCCCGTATTTCAATGCACTTTCGAAATATCTGATCAGAATGAAGCGGTGTTGGTTCGGGAGGAACTTCGATTTCAGTGTCACACAAGTGTCTTTTTAGAGGCATATCTAAAAAATTTTTAAACCAATTTCCAGCTTCTATAATAAATCCGTTTTTMTTTCATTTTAATTAGCGAATTGTCATTGGTTCTGATGCTAGTGACCTGTTTGTGAAATATCTTTCGAGCAATATTCTTACAAAGAAGTGTTCCTAGATCGGAAGAACTACAAAAATCAAGAAAAAAAACATTCCAGAGAAAAATAAAGTATTCAGGAAATCTCAAAAAAGTTTCACACATTTCCAGGTCATCGACATTTTGGATTGACTCGATTTAGTTGAAATTTAGATTGTTTTCCAGTACTTATTTCAATATACATTGACCAGCACGTCATTTCTCGAATCATTCTTATTCCTTTTTCAGGCTTTTTTAGTTGCGGAAAAAATAATACATATTTGTTCTTTTCTGTTGTTGTTATCTGAACGAAATTAACGAGTTACAAGTTTTCGACAAACGTTGTGTCTTACATTTAGCTCTGCTTATTTCGGAATTTTTCATGAACGACATCAAGAACTGGATTAGACTAAATCGAATATGTTCTAGAAAAAGTCTGAATCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACATCACGTAAGCTTGTGTTC</pcr_primer_p1>
		<pcr_primer_p2>AAAGATATTTCACAAACAGGTCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TACATCACGTAAGCTTGTGTTCTGATGTTCCCGTATTTCAATGCACTTTCGAAATATCTGATCAGAATGAAGCGGTGTTGGTTCGGGAGGAACTTCGATTTCAGTGTCACACAAGTGTCTTTTTAGAGGCATATCTAAAAAATTTTTAAACCAATTTCCAGCTTCTATAATAAATCCGTTTTTATTTCATTTTAATTAGCGAATTGTCATTGGTTCTGATGCTAGTGACCTGTTTGTGAAATATCTTT</canonical_amplicon>
		<polymorphic_amplicon>TACATCACGTAAGCTTGTGTTCTGATGTTCCCGTATTTCAATGCACTTTCGAAATATCTGATCAGAATGAAGCGGTGTTGGTTCGGGAGGAACTTCGATTTCAGTGTCACACAAGTGTCTTTTTAGAGGCATATCTAAAAAATTTTTAAACCAATTTCCAGCTTCTATAATAAATCCGTTTTTMTTTCATTTTAATTAGCGAATTGTCATTGGTTCTGATGCTAGTGACCTGTTTGTGAAATATCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17677</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>60050</contig_pos>
        <strand>+</strand>
        <context>TAATWAGCGA[A/G]TTGTCATTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTCCAGCTTCTATAATAAATCCGTTTTTATTTCATTTTAATTAGCGA</left_flank>
        <right_flank>TTGTCATTGGTTCTGATGCTAGTGACCTGTTTGTGAAATATCTTTCGAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTATCATGTTCATGTCACAATAGGTATTCGTTCATTTTCTACACACCATCTTACTGGGGTTCAATTTTTTATCTGTAATCTGTTTATCATGATTTTTTCTTTTTTCTTACAATTATCGAAATCGTAAATAAATAAATTAATGTATAAGGAATGGAGTTGTTCTGCTAATAATAATCAAAGCAGATTGATTACAGTTTCAAACACCAAAAACACTGAAATAGGCCTAAATTTACGTGCCGTTGCGATCCTTCTTTTCTATTATGAGTGATCACTGCTCTTGTTGCAAAAAGTGCATTACATCACGTAAGCTTGTGTTCTGATGTTCCCGTATTTCAATGCACTTTCGAAATATCTGATCAGAATGAAGCGGTGTTGGTTCGGGAGGAACTTCGATTTCAGTGTCACACAAGTGTCTTTTTAGAGGCATATCTAAAAAATTTTTAAACCAATTTCCAGCTTCTATAATAAATCCGTTTTTATTTCATTTTAATTAGCGAATTGTCATTGGTTCTGATGCTAGTGACCTGTTTGTGAAATATCTTTCGAGCAATATTCTTACAAAGAAGTGTTCCTAGATCGGAAGAACTACAAAAATCAAGAAAAAAAACATTCCAGAGAAAAATAAAGTATTCAGGAAATCTCAAAAAAGTTTCACACATTTCCAGGTCATCGACATTTTGGATTGACTCGATTTAGTTGAAATTTAGATTGTTTTCCAGTACTTATTTCAATATACATTGACCAGCACGTCATTTCTCGAATCATTCTTATTCCTTTTTCAGGCTTTTTTAGTTGCGGAAAAAATAATACATATTTGTTCTTTTCTGTTGTTGTTATCTGAACGAAATTAACGAGTTACAAGTTTTCGACAAACGTTGTGTCTTACATTTAGCTCTGCTTATTTCGGAATTTTTCATGAACGACATCAAGAACTGGATTAGACTAAATCGAATATGTTCTAGAAAAAGTCTGAATCAGAAGCAGTTACTGAAATGTTC</canonical>
            <polymorphic>TTTTATCATGTTCATGTCACAATAGGTATTCGTTCATTTTCTACACACCATCTTACTGGGGTTCAATTTTTTATCTGTAATCTGTTTATCATGATTTTTTCTTTTTTCTTACAATTATCGAAATCGTAAATAAATAAATTAATGTATAAGGAATGGAGTTGTTCTGCTAATAATAATCAAAGCAGATTGATTACAGTTTCAAACACCAAAAACACTGAAATAGGCCTAAATTTACGTGCCGTTGCGATCCTTCTTTTCTATTATGAGTGATCACTGCTCTTGTTGCAAAAAGTGCATTACATCACGTAAGCTTGTGTTCTGATGTTCCCGTATTTCAATGCACTTTCGAAATATCTGATCAGAATGAAGCGGTGTTGGTTCGGGAGGAACTTCGATTTCAGTGTCACACAAGTGTCTTTTTAGAGGCATATCTAAAAAATTTTTAAACCAATTTCCAGCTTCTATAATAAATCCGTTTTTATTTCATTTTAATTAGCGARTTGTCATTGGTTCTGATGCTAGTGACCTGTTTGTGAAATATCTTTCGAGCAATATTCTTACAAAGAAGTGTTCCTAGATCGGAAGAACTACAAAAATCAAGAAAAAAAACATTCCAGAGAAAAATAAAGTATTCAGGAAATCTCAAAAAAGTTTCACACATTTCCAGGTCATCGACATTTTGGATTGACTCGATTTAGTTGAAATTTAGATTGTTTTCCAGTACTTATTTCAATATACATTGACCAGCACGTCATTTCTCGAATCATTCTTATTCCTTTTTCAGGCTTTTTTAGTTGCGGAAAAAATAATACATATTTGTTCTTTTCTGTTGTTGTTATCTGAACGAAATTAACGAGTTACAAGTTTTCGACAAACGTTGTGTCTTACATTTAGCTCTGCTTATTTCGGAATTTTTCATGAACGACATCAAGAACTGGATTAGACTAAATCGAATATGTTCTAGAAAAAGTCTGAATCAGAAGCAGTTACTGAAATGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>209 204 145 92 91 64 62 48 41 24 12 8</canonical_bands>
                <polymorphic_bands>212 209 145 92 91 64 62 48 41 24 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAATTTCCAGCTTCTATAATAA</pcr_primer_p1>
		<pcr_primer_p2>CTAAATCGAGTCAATCCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCAATTTCCAGCTTCTATAATAAATCCGTTTTTATTTCATTTTAATTAGCGAATTGTCATTGGTTCTGATGCTAGTGACCTGTTTGTGAAATATCTTTCGAGCAATATTCTTACAAAGAAGTGTTCCTAGATCGGAAGAACTACAAAAATCAAGAAAAAAAACATTCCAGAGAAAAATAAAGTATTCAGGAAATCTCAAAAAAGTTTCACACATTTCCAGGTCATCGACATTTTGGATTGACTCGATTTAG</canonical_amplicon>
		<polymorphic_amplicon>CCAATTTCCAGCTTCTATAATAAATCCGTTTTTATTTCATTTTAATTAGCGARTTGTCATTGGTTCTGATGCTAGTGACCTGTTTGTGAAATATCTTTCGAGCAATATTCTTACAAAGAAGTGTTCCTAGATCGGAAGAACTACAAAAATCAAGAAAAAAAACATTCCAGAGAAAAATAAAGTATTCAGGAAATCTCAAAAAAGTTTCACACATTTCCAGGTCATCGACATTTTGGATTGACTCGATTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17679</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>62136</contig_pos>
        <strand></strand>
        <context>TATGTTTCCA[C/A]MTCAAATTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AGTTGAGAATTTGTTTATTTGATGAGTAGCGTTTTTTGTTTATGTTTCCA</left_flank>
        <right_flank>ATCAAATTTGTTTCCCTCTTACAATGTTCTACCTAACTCATTTTTTGAAT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGTAAGTTATTAGAATGCTTTTCTAAATAAGTAATAATTTGATTCAGATCATCTATATCTTAATCTACGTCATGTTATTCAACATCAACTTTTTATATTCTTCAAGGTGAGAAAACAATGACGTCATTTTTCCATTTCAATATAATTTTTCCAGAGTTGCACAATAATCACTTCATTCTACCATATACAGACTTCATGTTTATCACAATCAACGGGTCGACTCAGGCAATTTTGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTTCTCGAATTTCAAATTATCCTTTATTGTACCATTTTTTTGTACTCATCTACTTATATGTTTCTTAATAGTTGTTCATTATTATTTGATAGTCTTTTAAAAAATTGTTAAATCATTTCAAGAAGCAGTTAAAAGCTAAGAGCAAGAAGACGAGTCTAATTTGAGTTAGAGTTGAGAATTTGTTTATTTGATGAGTAGCGTTTTTTGTTTATGTTTCCACATCAAATTTGTTTCCCTCTTACAATGTTCTACCTAACTCATTTTTTGAATACCTCTGCGGCAGGATATTGCTAATTTAGAGATAAGTTTTTTTTGTTTTTGGACCAGCAAGATAACCGCCATCGCAGCCAAATTGTTTTTTTTTTGATGTATAGTTTTAGTTGTACTGACTATTCCATCCACCTGGCCGTCCAAATTTTTTTTTGTTTTTAGTAACCAACTGGCAATGTGCGCTGGATCCCAAAAATTGTCCCGATTCATTTTCTCTTCATGTAAATTAAATAAAGATTGATAACTTTCTTTTTTTTCAAATGTGTGAATGAAAAAGAAAATAAAGTTTCCCTATTCAAGTTCTGATTGGAGTTCAAAATGGAGCCAAATATAAGACACAAAGACAAAAGAACTGAGGCCGTATTTATTTATTTATTTATTTATTTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACA</canonical>
            <polymorphic>AATGTAAGTTATTAGAATGCTTTTCTAAATAAGTAATAATTTGATTCAGATCATCTATATCTTAATCTACGTCATGTTATTCAACATCAACTTTTTATATTCTTCAAGGTGAGAAAACAATGACGTCATTTTTCCATTTCAATATAATTTTTCCAGAGTTGCACAATAATCACTTCATTCTACCATATACAGACTTCATGTTTATCACAATCAACGGGTCGACTCAGGCAATTTTGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTTCTCGAATTTCAAATTATCCTTTATTGTACCATTTTTTTGTACTCATCTACTTATATGTTTCTTAATAGTTGTTCATTATTATTTGATAGTCTTTTAAAAAATTGTTAAATCATTTCAAGAAGCAGTTAAAAGCTAAGAGCAAGAAGACGAGTCTAATTTGAGTTAGAGTTGAGAATTTGTTTATTTGATGAGTAGCGTTTTTTGTTTATGTTTCCAMATCAAATTTGTTTCCCTCTTACAATGTTCTACCTAACTCATTTTTTGAATACCTCTGCGGCAGGATATTGCTAATTTAGAGATAAGTTTTTTTTGTTTTTGGACCAGCAAGATAACCGCCATCGCAGCCAAATTGTTTTTTTTTTGATGTATAGTTTTAGTTGTACTGACTATTCCATCCACCTGGCCGTCCAAATTTTTTTTTGTTTTTAGTAACCAACTGGCAATGTGCGCTGGATCCCAAAAATTGTCCCGATTCATTTTCTCTTCATGTAAATTAAATAAAGATTGATAACTTTCTTTTTTTTCAAATGTGTGAATGAAAAAGAAAATAAAGTTTCCCTATTCAAGTTCTGATTGGAGTTCAAAATGGAGCCAAATATAAGACACAAAGACAAAAGAACTGAGGCCGTATTTATTTATTTATTTATTTATTTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>292 182 111 85 73 71 52 49 35 29 9 6 4 2</canonical_bands>
                <polymorphic_bands>474 111 85 73 71 52 49 35 29 9 6 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTGAGTTAGAGTTGAGAATTTG</pcr_primer_p1>
		<pcr_primer_p2>GTGGATGGAATAGTCAGTACAAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATTTGAGTTAGAGTTGAGAATTTGTTTATTTGATGAGTAGCGTTTTTTGTTTATGTTTCCACATCAAATTTGTTTCCCTCTTACAATGTTCTACCTAACTCATTTTTTGAATACCTCTGCGGCAGGATATTGCTAATTTAGAGATAAGTTTTTTTTGTTTTTGGACCAGCAAGATAACCGCCATCGCAGCCAAATTGTTTTTTTTTTGATGTATAGTTTTAGTTGTACTGACTATTCCATCCAC</canonical_amplicon>
		<polymorphic_amplicon>AATTTGAGTTAGAGTTGAGAATTTGTTTATTTGATGAGTAGCGTTTTTTGTTTATGTTTCCAMATCAAATTTGTTTCCCTCTTACAATGTTCTACCTAACTCATTTTTTGAATACCTCTGCGGCAGGATATTGCTAATTTAGAGATAAGTTTTTTTTGTTTTTGGACCAGCAAGATAACCGCCATCGCAGCCAAATTGTTTTTTTTTTGATGTATAGTTTTAGTTGTACTGACTATTCCATCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17680</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>62014</contig_pos>
        <strand>+</strand>
        <context>GATAGTCTTT[A/T]AAAAAATTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCTACTTATATGTTTCTTAATAGTTGTTCATTATTATTTGATAGTCTTT</left_flank>
        <right_flank>AAAAAATTGTTAAATCATTTCAAGAAGCAGTTAAAAGCTAAGAGCAAGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAAGACGACAGAAAAATTATCCGTGGTTGCCAGGCACGCCTAAGCTCTCCCCAGTCGCTCTTCATGTCCTCCTAGCTATCGGACGTTTAGTATATATTTTCTTTGGGTCGACTCAATGTAAATGTAAGTTATTAGAATGCTTTTCTAAATAAGTAATAATTTGATTCAGATCATCTATATCTTAATCTACGTCATGTTATTCAACATCAACTTTTTATATTCTTCAAGGTGAGAAAACAATGACGTCATTTTTCCATTTCAATATAATTTTTCCAGAGTTGCACAATAATCACTTCATTCTACCATATACAGACTTCATGTTTATCACAATCAACGGGTCGACTCAGGCAATTTTGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTTCTCGAATTTCAAATTATCCTTTATTGTACCATTTTTTTGTACTCATCTACTTATATGTTTCTTAATAGTTGTTCATTATTATTTGATAGTCTTTTAAAAAATTGTTAAATCATTTCAAGAAGCAGTTAAAAGCTAAGAGCAAGAAGACGAGTCTAATTTGAGTTAGAGTTGAGAATTTGTTTATTTGATGAGTAGCGTTTTTTGTTTATGTTTCCACATCAAATTTGTTTCCCTCTTACAATGTTCTACCTAACTCATTTTTTGAATACCTCTGCGGCAGGATATTGCTAATTTAGAGATAAGTTTTTTTTGTTTTTGGACCAGCAAGATAACCGCCATCGCAGCCAAATTGTTTTTTTTTTGATGTATAGTTTTAGTTGTACTGACTATTCCATCCACCTGGCCGTCCAAATTTTTTTTTGTTTTTAGTAACCAACTGGCAATGTGCGCTGGATCCCAAAAATTGTCCCGATTCATTTTCTCTTCATGTAAATTAAATAAAGATTGATAACTTTCTTTTTTTTCAAATGTGTGAATGAAAAAGAAAATAAAGTTTCCCTATTCAAGTTCTGATTGGAGTTCAAAATGGAGCCAA</canonical>
            <polymorphic>AAGAAGACGACAGAAAAATTATCCGTGGTTGCCAGGCACGCCTAAGCTCTCCCCAGTCGCTCTTCATGTCCTCCTAGCTATCGGACGTTTAGTATATATTTTCTTTGGGTCGACTCAATGTAAATGTAAGTTATTAGAATGCTTTTCTAAATAAGTAATAATTTGATTCAGATCATCTATATCTTAATCTACGTCATGTTATTCAACATCAACTTTTTATATTCTTCAAGGTGAGAAAACAATGACGTCATTTTTCCATTTCAATATAATTTTTCCAGAGTTGCACAATAATCACTTCATTCTACCATATACAGACTTCATGTTTATCACAATCAACGGGTCGACTCAGGCAATTTTGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTTCTCGAATTTCAAATTATCCTTTATTGTACCATTTTTTTGTACTCATCTACTTATATGTTTCTTAATAGTTGTTCATTATTATTTGATAGTCTTTWAAAAAATTGTTAAATCATTTCAAGAAGCAGTTAAAAGCTAAGAGCAAGAAGACGAGTCTAATTTGAGTTAGAGTTGAGAATTTGTTTATTTGATGAGTAGCGTTTTTTGTTTATGTTTCCACATCAAATTTGTTTCCCTCTTACAATGTTCTACCTAACTCATTTTTTGAATACCTCTGCGGCAGGATATTGCTAATTTAGAGATAAGTTTTTTTTGTTTTTGGACCAGCAAGATAACCGCCATCGCAGCCAAATTGTTTTTTTTTTGATGTATAGTTTTAGTTGTACTGACTATTCCATCCACCTGGCCGTCCAAATTTTTTTTTGTTTTTAGTAACCAACTGGCAATGTGCGCTGGATCCCAAAAATTGTCCCGATTCATTTTCTCTTCATGTAAATTAAATAAAGATTGATAACTTTCTTTTTTTTCAAATGTGTGAATGAAAAAGAAAATAAAGTTTCCCTATTCAAGTTCTGATTGGAGTTCAAAATGGAGCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>368 283 184 101 32 21 11</canonical_bands>
                <polymorphic_bands>368 283 184 101 43 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGACTTCATGTTTATCACAATC</pcr_primer_p1>
		<pcr_primer_p2>TAGACTCGTCTTCTTGCTCTTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACAGACTTCATGTTTATCACAATCAACGGGTCGACTCAGGCAATTTTGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTTCTCGAATTTCAAATTATCCTTTATTGTACCATTTTTTTGTACTCATCTACTTATATGTTTCTTAATAGTTGTTCATTATTATTTGATAGTCTTTTAAAAAATTGTTAAATCATTTCAAGAAGCAGTTAAAAGCTAAGAGCAAGAAGACGAGTCTA</canonical_amplicon>
		<polymorphic_amplicon>ACAGACTTCATGTTTATCACAATCAACGGGTCGACTCAGGCAATTTTGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTTCTCGAATTTCAAATTATCCTTTATTGTACCATTTTTTTGTACTCATCTACTTATATGTTTCTTAATAGTTGTTCATTATTATTTGATAGTCTTTWAAAAAATTGTTAAATCATTTCAAGAAGCAGTTAAAAGCTAAGAGCAAGAAGACGAGTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17682</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>69740</contig_pos>
        <strand>+</strand>
        <context>TGTACAGATT[C/T]AGTTGTAGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTGTTTTTGGTTGTATGTTTTCCAAGCTGTTTTCTTATGTACAGATT</left_flank>
        <right_flank>AGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTAAGTTATTAGAATGCTTGTTGACACTGAAAGAATAAGTTATTTCAGATTATCTACATCCTAATTTCATCTAGTTATCCACGTCATGTTATTTAATATCAATATCATTGGATCTGATTAAAGGTGAGGAATTGATGACGTCATTTTTTGAATCCAATATAATTTTTGTTCAGAATTTCACAATAACCACTTCTTTCAAACATACTACACTTCATGTTTATCACAATCAACGGGTCTACTCAAGCAATTTTGACAGCCGTCTGGTTTGGCAGTCTTCCTTGTCAATGGGTTCTATTTTTCTCGAATTTCAAATTTTTTTCGAATGTTTTGTTTTTTTTAATTTTCATTTACTTCTTCTGTTTATAAAAGTTCACGATTAGTTGCTGCTTTTGCAGTTAAATTTTTCACTTACATGACTTCACCGTAATAAGCACCACTCAAAAAGTTGTTTTTGTTTTTGGTTGTATGTTTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACAC</canonical>
            <polymorphic>TGTAAGTTATTAGAATGCTTGTTGACACTGAAAGAATAAGTTATTTCAGATTATCTACATCCTAATTTCATCTAGTTATCCACGTCATGTTATTTAATATCAATATCATTGGATCTGATTAAAGGTGAGGAATTGATGACGTCATTTTTTGAATCCAATATAATTTTTGTTCAGAATTTCACAATAACCACTTCTTTCAAACATACTACACTTCATGTTTATCACAATCAACGGGTCTACTCAAGCAATTTTGACAGCCGTCTGGTTTGGCAGTCTTCCTTGTCAATGGGTTCTATTTTTCTCGAATTTCAAATTTTTTTCGAATGTTTTGTTTTTTTTAATTTTCATTTACTTCTTCTGTTTATAAAAGTTCACGATTAGTTGCTGCTTTTGCAGTTAAATTTTTCACTTACATGACTTCACCGTAATAAGCACCACTCAAAAAGTTGTTTTTGTTTTTGGTTGTATGTTTTCCAAGCTGTTTTCTTATGTACAGATTYAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCAGTTAAATTTTTCACTTACAT</pcr_primer_p1>
		<pcr_primer_p2>CGGATACTTCATTGAATTTTACTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGCAGTTAAATTTTTCACTTACATGACTTCACCGTAATAAGCACCACTCAAAAAGTTGTTTTTGTTTTTGGTTGTATGTTTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCG</canonical_amplicon>
		<polymorphic_amplicon>TGCAGTTAAATTTTTCACTTACATGACTTCACCGTAATAAGCACCACTCAAAAAGTTGTTTTTGTTTTTGGTTGTATGTTTTCCAAGCTGTTTTCTTATGTACAGATTYAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17683</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>69798</contig_pos>
        <strand>+</strand>
        <context>TCATGGTCGC[A/T]CTTCTTCACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGC</left_flank>
        <right_flank>CTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCTAATTTCATCTAGTTATCCACGTCATGTTATTTAATATCAATATCATTGGATCTGATTAAAGGTGAGGAATTGATGACGTCATTTTTTGAATCCAATATAATTTTTGTTCAGAATTTCACAATAACCACTTCTTTCAAACATACTACACTTCATGTTTATCACAATCAACGGGTCTACTCAAGCAATTTTGACAGCCGTCTGGTTTGGCAGTCTTCCTTGTCAATGGGTTCTATTTTTCTCGAATTTCAAATTTTTTTCGAATGTTTTGTTTTTTTTAATTTTCATTTACTTCTTCTGTTTATAAAAGTTCACGATTAGTTGCTGCTTTTGCAGTTAAATTTTTCACTTACATGACTTCACCGTAATAAGCACCACTCAAAAAGTTGTTTTTGTTTTTGGTTGTATGTTTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGGCTATAAAACGAGGAGTGTGCCGC</canonical>
            <polymorphic>ATCCTAATTTCATCTAGTTATCCACGTCATGTTATTTAATATCAATATCATTGGATCTGATTAAAGGTGAGGAATTGATGACGTCATTTTTTGAATCCAATATAATTTTTGTTCAGAATTTCACAATAACCACTTCTTTCAAACATACTACACTTCATGTTTATCACAATCAACGGGTCTACTCAAGCAATTTTGACAGCCGTCTGGTTTGGCAGTCTTCCTTGTCAATGGGTTCTATTTTTCTCGAATTTCAAATTTTTTTCGAATGTTTTGTTTTTTTTAATTTTCATTTACTTCTTCTGTTTATAAAAGTTCACGATTAGTTGCTGCTTTTGCAGTTAAATTTTTCACTTACATGACTTCACCGTAATAAGCACCACTCAAAAAGTTGTTTTTGTTTTTGGTTGTATGTTTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCWCTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGGCTATAAAACGAGGAGTGTGCCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>150 145 94 62 54 53 47 45 34 32 31 28 27 25 24 21 20 19 14 14 13 12 9 8 8 4 3 2 2</canonical_bands>
                <polymorphic_bands>150 145 94 62 54 53 47 45 35 34 32 31 28 25 24 21 20 19 14 14 13 12 9 8 4 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAAGCTGTTTTCTTATGTA</pcr_primer_p1>
		<pcr_primer_p2>TCTTGCGATTTTATAAGATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCWCTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17684</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>69888</contig_pos>
        <strand>+</strand>
        <context>CGAATATAAA[A/C]AACTRAGACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAA</left_flank>
        <right_flank>AACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAATCCAATATAATTTTTGTTCAGAATTTCACAATAACCACTTCTTTCAAACATACTACACTTCATGTTTATCACAATCAACGGGTCTACTCAAGCAATTTTGACAGCCGTCTGGTTTGGCAGTCTTCCTTGTCAATGGGTTCTATTTTTCTCGAATTTCAAATTTTTTTCGAATGTTTTGTTTTTTTTAATTTTCATTTACTTCTTCTGTTTATAAAAGTTCACGATTAGTTGCTGCTTTTGCAGTTAAATTTTTCACTTACATGACTTCACCGTAATAAGCACCACTCAAAAAGTTGTTTTTGTTTTTGGTTGTATGTTTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGGCTATAAAACGAGGAGTGTGCCGCCGTTTAGAAGAACGTTCGCGTTCTCGCTTGTACGGCAACATGGAGTTATGGTAGGGGTGACCATACATATTTTCTGACTATACTGTGTTC</canonical>
            <polymorphic>TTGAATCCAATATAATTTTTGTTCAGAATTTCACAATAACCACTTCTTTCAAACATACTACACTTCATGTTTATCACAATCAACGGGTCTACTCAAGCAATTTTGACAGCCGTCTGGTTTGGCAGTCTTCCTTGTCAATGGGTTCTATTTTTCTCGAATTTCAAATTTTTTTCGAATGTTTTGTTTTTTTTAATTTTCATTTACTTCTTCTGTTTATAAAAGTTCACGATTAGTTGCTGCTTTTGCAGTTAAATTTTTCACTTACATGACTTCACCGTAATAAGCACCACTCAAAAAGTTGTTTTTGTTTTTGGTTGTATGTTTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAMAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGGCTATAAAACGAGGAGTGTGCCGCCGTTTAGAAGAACGTTCGCGTTCTCGCTTGTACGGCAACATGGAGTTATGGTAGGGGTGACCATACATATTTTCTGACTATACTGTGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAAGCTGTTTTCTTATGTA</pcr_primer_p1>
		<pcr_primer_p2>TCTTGCGATTTTATAAGATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAMAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17685</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>69893</contig_pos>
        <strand>+</strand>
        <context>ATAAAMAACT[A/G]AGACAAAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACT</left_flank>
        <right_flank>AGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAATATAATTTTTGTTCAGAATTTCACAATAACCACTTCTTTCAAACATACTACACTTCATGTTTATCACAATCAACGGGTCTACTCAAGCAATTTTGACAGCCGTCTGGTTTGGCAGTCTTCCTTGTCAATGGGTTCTATTTTTCTCGAATTTCAAATTTTTTTCGAATGTTTTGTTTTTTTTAATTTTCATTTACTTCTTCTGTTTATAAAAGTTCACGATTAGTTGCTGCTTTTGCAGTTAAATTTTTCACTTACATGACTTCACCGTAATAAGCACCACTCAAAAAGTTGTTTTTGTTTTTGGTTGTATGTTTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGGCTATAAAACGAGGAGTGTGCCGCCGTTTAGAAGAACGTTCGCGTTCTCGCTTGTACGGCAACATGGAGTTATGGTAGGGGTGACCATACATATTTTCTGACTATACTGTGTTCATAAA</canonical>
            <polymorphic>TCCAATATAATTTTTGTTCAGAATTTCACAATAACCACTTCTTTCAAACATACTACACTTCATGTTTATCACAATCAACGGGTCTACTCAAGCAATTTTGACAGCCGTCTGGTTTGGCAGTCTTCCTTGTCAATGGGTTCTATTTTTCTCGAATTTCAAATTTTTTTCGAATGTTTTGTTTTTTTTAATTTTCATTTACTTCTTCTGTTTATAAAAGTTCACGATTAGTTGCTGCTTTTGCAGTTAAATTTTTCACTTACATGACTTCACCGTAATAAGCACCACTCAAAAAGTTGTTTTTGTTTTTGGTTGTATGTTTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTRAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGGCTATAAAACGAGGAGTGTGCCGCCGTTTAGAAGAACGTTCGCGTTCTCGCTTGTACGGCAACATGGAGTTATGGTAGGGGTGACCATACATATTTTCTGACTATACTGTGTTCATAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAAGCTGTTTTCTTATGTA</pcr_primer_p1>
		<pcr_primer_p2>TCTTGCGATTTTATAAGATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTRAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17686</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>69978</contig_pos>
        <strand>+</strand>
        <context>AAAAATGGCG[G/T]ATTCAAGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCG</left_flank>
        <right_flank>ATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCAAGCAATTTTGACAGCCGTCTGGTTTGGCAGTCTTCCTTGTCAATGGGTTCTATTTTTCTCGAATTTCAAATTTTTTTCGAATGTTTTGTTTTTTTTAATTTTCATTTACTTCTTCTGTTTATAAAAGTTCACGATTAGTTGCTGCTTTTGCAGTTAAATTTTTCACTTACATGACTTCACCGTAATAAGCACCACTCAAAAAGTTGTTTTTGTTTTTGGTTGTATGTTTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGGCTATAAAACGAGGAGTGTGCCGCCGTTTAGAAGAACGTTCGCGTTCTCGCTTGTACGGCAACATGGAGTTATGGTAGGGGTGACCATACATATTTTCTGACTATACTGTGTTCATAAAAACTTCAAAAGTACGAAAATTGATCTCGTTGGGATTTTGAGCTTTCAACCAATAACAACTTTATATGACATACTAAATTCTGAAA</canonical>
            <polymorphic>ACTCAAGCAATTTTGACAGCCGTCTGGTTTGGCAGTCTTCCTTGTCAATGGGTTCTATTTTTCTCGAATTTCAAATTTTTTTCGAATGTTTTGTTTTTTTTAATTTTCATTTACTTCTTCTGTTTATAAAAGTTCACGATTAGTTGCTGCTTTTGCAGTTAAATTTTTCACTTACATGACTTCACCGTAATAAGCACCACTCAAAAAGTTGTTTTTGTTTTTGGTTGTATGTTTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGKATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGGCTATAAAACGAGGAGTGTGCCGCCGTTTAGAAGAACGTTCGCGTTCTCGCTTGTACGGCAACATGGAGTTATGGTAGGGGTGACCATACATATTTTCTGACTATACTGTGTTCATAAAAACTTCAAAAGTACGAAAATTGATCTCGTTGGGATTTTGAGCTTTCAACCAATAACAACTTTATATGACATACTAAATTCTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>496 290 183 31</canonical_bands>
                <polymorphic_bands>786 183 31</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>500 442 58</canonical_bands>
                <polymorphic_bands>558 442</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 442 58</canonical_bands>
                <polymorphic_bands>558 442</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGATTCTAGTTTCAGGAAAATCT</pcr_primer_p1>
		<pcr_primer_p2>CTGGAATTATCGCCTAACATT</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAG</canonical_amplicon>
		<polymorphic_amplicon>TTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGKATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17687</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>71356</contig_pos>
        <strand>+</strand>
        <context>ATCGATRAGG[A/T]CATTTGTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGG</left_flank>
        <right_flank>CATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCTTTTCCATTTGTAATCAATTGATAACTTTTGAAAGTTTCTGAGGTCTTTATCCTTAACCCGTTAAAAGCTAAGAAGAAGAAGAGCAATCTAGTCCAAAATAAATTGTATTATCATTAATAGCCATTTTATTTTTTCTATAGAAACAATTTCAAGACAGCCTTCTTCTCTAGTGACTAATATAGAACATTTACCTCGCTCCCTGATTTAGTCATTCCCGCTTGTTAATAATTGTAAAGATCTTCATCTACATCTTCGTTGCTATTGTTGTAAATAGATATTG</canonical>
            <polymorphic>GCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGWCATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCTTTTCCATTTGTAATCAATTGATAACTTTTGAAAGTTTCTGAGGTCTTTATCCTTAACCCGTTAAAAGCTAAGAAGAAGAAGAGCAATCTAGTCCAAAATAAATTGTATTATCATTAATAGCCATTTTATTTTTTCTATAGAAACAATTTCAAGACAGCCTTCTTCTCTAGTGACTAATATAGAACATTTACCTCGCTCCCTGATTTAGTCATTCCCGCTTGTTAATAATTGTAAAGATCTTCATCTACATCTTCGTTGCTATTGTTGTAAATAGATATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTGATAATTTATTCCAGATCA</pcr_primer_p1>
		<pcr_primer_p2>AACCCATTGACAAAGAAGACT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTT</canonical_amplicon>
		<polymorphic_amplicon>GAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGWCATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17688</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>71352</contig_pos>
        <strand>+</strand>
        <context>AAGAATCGAT[A/G]AGGWCATTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGAT</left_flank>
        <right_flank>AGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCTTTTCCATTTGTAATCAATTGATAACTTTTGAAAGTTTCTGAGGTCTTTATCCTTAACCCGTTAAAAGCTAAGAAGAAGAAGAGCAATCTAGTCCAAAATAAATTGTATTATCATTAATAGCCATTTTATTTTTTCTATAGAAACAATTTCAAGACAGCCTTCTTCTCTAGTGACTAATATAGAACATTTACCTCGCTCCCTGATTTAGTCATTCCCGCTTGTTAATAATTGTAAAGATCTTCATCTACATCTTCGTTGCTATTGTTGTAAATAGAT</canonical>
            <polymorphic>CCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATRAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCTTTTCCATTTGTAATCAATTGATAACTTTTGAAAGTTTCTGAGGTCTTTATCCTTAACCCGTTAAAAGCTAAGAAGAAGAAGAGCAATCTAGTCCAAAATAAATTGTATTATCATTAATAGCCATTTTATTTTTTCTATAGAAACAATTTCAAGACAGCCTTCTTCTCTAGTGACTAATATAGAACATTTACCTCGCTCCCTGATTTAGTCATTCCCGCTTGTTAATAATTGTAAAGATCTTCATCTACATCTTCGTTGCTATTGTTGTAAATAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTGATAATTTATTCCAGATCA</pcr_primer_p1>
		<pcr_primer_p2>AACCCATTGACAAAGAAGACT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTT</canonical_amplicon>
		<polymorphic_amplicon>GAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATRAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17689</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>71327</contig_pos>
        <strand>+</strand>
        <context>AGTTCATTAG[A/G]TCTTTATAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAG</left_flank>
        <right_flank>TCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCTTTTCCATTTGTAATCAATTGATAACTTTTGAAAGTTTCTGAGGTCTTTATCCTTAACCCGTTAAAAGCTAAGAAGAAGAAGAGCAATCTAGTCCAAAATAAATTGTATTATCATTAATAGCCATTTTATTTTTTCTATAGAAACAATTTCAAGACAGCCTTCTTCTCTAGTGACTAATATAGAACATTTACCTCGCTCCCTGATTTAGTCATTCCCGCTTGTTAATAATTGTAAAGATCTTCATCTACATC</canonical>
            <polymorphic>ATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGRTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCTTTTCCATTTGTAATCAATTGATAACTTTTGAAAGTTTCTGAGGTCTTTATCCTTAACCCGTTAAAAGCTAAGAAGAAGAAGAGCAATCTAGTCCAAAATAAATTGTATTATCATTAATAGCCATTTTATTTTTTCTATAGAAACAATTTCAAGACAGCCTTCTTCTCTAGTGACTAATATAGAACATTTACCTCGCTCCCTGATTTAGTCATTCCCGCTTGTTAATAATTGTAAAGATCTTCATCTACATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTGATAATTTATTCCAGATCA</pcr_primer_p1>
		<pcr_primer_p2>AACCCATTGACAAAGAAGACT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTT</canonical_amplicon>
		<polymorphic_amplicon>GAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGRTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17690</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>71316</contig_pos>
        <strand>+</strand>
        <context>ATTCAATATC[A/G]AGTTCATTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATC</left_flank>
        <right_flank>AGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCTTTTCCATTTGTAATCAATTGATAACTTTTGAAAGTTTCTGAGGTCTTTATCCTTAACCCGTTAAAAGCTAAGAAGAAGAAGAGCAATCTAGTCCAAAATAAATTGTATTATCATTAATAGCCATTTTATTTTTTCTATAGAAACAATTTCAAGACAGCCTTCTTCTCTAGTGACTAATATAGAACATTTACCTCGCTCCCTGATTTAGTCATTCCCGCTTGTTAATAATTGTAAAGATCT</canonical>
            <polymorphic>AACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCRAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCTTTTCCATTTGTAATCAATTGATAACTTTTGAAAGTTTCTGAGGTCTTTATCCTTAACCCGTTAAAAGCTAAGAAGAAGAAGAGCAATCTAGTCCAAAATAAATTGTATTATCATTAATAGCCATTTTATTTTTTCTATAGAAACAATTTCAAGACAGCCTTCTTCTCTAGTGACTAATATAGAACATTTACCTCGCTCCCTGATTTAGTCATTCCCGCTTGTTAATAATTGTAAAGATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTGATAATTTATTCCAGATCA</pcr_primer_p1>
		<pcr_primer_p2>AACCCATTGACAAAGAAGACT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTT</canonical_amplicon>
		<polymorphic_amplicon>GAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCRAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17691</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>71269</contig_pos>
        <strand>+</strand>
        <context>TCCAGATCAT[C/T]TATATCTCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCAT</left_flank>
        <right_flank>TATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCTTTTCCATTTGTAATCAATTGATAACTTTTGAAAGTTTCTGAGGTCTTTATCCTTAACCCGTTAAAAGCTAAGAAGAAGAAGAGCAATCTAGTCCAAAATAAATTGTATTATCATTAATAGCCATTTTATTTTTTCTATAGAAACAATTTCAAGACAGCCTTCTTCTCTAGTGACTAATATAGAACATTTACCT</canonical>
            <polymorphic>AAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATYTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCTTTTCCATTTGTAATCAATTGATAACTTTTGAAAGTTTCTGAGGTCTTTATCCTTAACCCGTTAAAAGCTAAGAAGAAGAAGAGCAATCTAGTCCAAAATAAATTGTATTATCATTAATAGCCATTTTATTTTTTCTATAGAAACAATTTCAAGACAGCCTTCTTCTCTAGTGACTAATATAGAACATTTACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTATTAGGATGCTCGGTGA</pcr_primer_p1>
		<pcr_primer_p2>GTCGAAATTGCCTGAGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>GTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGAC</canonical_amplicon>
		<polymorphic_amplicon>GTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATYTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17692</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>71215</contig_pos>
        <strand>+</strand>
        <context>TCAATGTAWA[C/T]GTAAGTTATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATA</left_flank>
        <right_flank>GTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCTTTTCCATTTGTAATCAATTGATAACTTTTGAAAGTTTCTGAGGTCTTTATCCTTAACCCGTTAAAAGCTAAGAAGAAGAAGAGCAATCTAGTCCAAAATAAATTGTATTATCATTAATAGCCATTTTATTTTTTCTATA</canonical>
            <polymorphic>TTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATAYGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCTTTTCCATTTGTAATCAATTGATAACTTTTGAAAGTTTCTGAGGTCTTTATCCTTAACCCGTTAAAAGCTAAGAAGAAGAAGAGCAATCTAGTCCAAAATAAATTGTATTATCATTAATAGCCATTTTATTTTTTCTATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>485 277 227 11</canonical_bands>
                <polymorphic_bands>485 277 238</polymorphic_bands>
            </assay>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTATAC</site>
                <isoschizomers>
                    <enzyme>BssNAI</enzyme>
                    <enzyme>Bst1107I</enzyme>
                    <enzyme>BstZ17I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TACGTA</site>
                <isoschizomers>
                    <enzyme>BstSNI</enzyme>
                    <enzyme>Eco105I</enzyme>
                    <enzyme>SnaBI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>486 276 227 11</canonical_bands>
                <polymorphic_bands>486 276 238</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>460 419 82 39</canonical_bands>
                <polymorphic_bands>460 419 121</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTATCCCTCGTTGTACTGC</pcr_primer_p1>
		<pcr_primer_p2>CGTGGATAACTAGATATGATTGAG</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>GATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACG</canonical_amplicon>
		<polymorphic_amplicon>GATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATAYGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17693</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>71213</contig_pos>
        <strand>+</strand>
        <context>ACTCAATGTA[A/T]AYGTAAGTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTA</left_flank>
        <right_flank>ACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCTTTTCCATTTGTAATCAATTGATAACTTTTGAAAGTTTCTGAGGTCTTTATCCTTAACCCGTTAAAAGCTAAGAAGAAGAAGAGCAATCTAGTCCAAAATAAATTGTATTATCATTAATAGCCATTTTATTTTTTCTA</canonical>
            <polymorphic>CTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTAWACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCTTTTCCATTTGTAATCAATTGATAACTTTTGAAAGTTTCTGAGGTCTTTATCCTTAACCCGTTAAAAGCTAAGAAGAAGAAGAGCAATCTAGTCCAAAATAAATTGTATTATCATTAATAGCCATTTTATTTTTTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>487 275 227 11</canonical_bands>
                <polymorphic_bands>487 275 238</polymorphic_bands>
            </assay>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTATAC</site>
                <isoschizomers>
                    <enzyme>BssNAI</enzyme>
                    <enzyme>Bst1107I</enzyme>
                    <enzyme>BstZ17I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TACGTA</site>
                <isoschizomers>
                    <enzyme>BstSNI</enzyme>
                    <enzyme>Eco105I</enzyme>
                    <enzyme>SnaBI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTATCCCTCGTTGTACTGC</pcr_primer_p1>
		<pcr_primer_p2>CGTGGATAACTAGATATGATTGAG</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>GATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACG</canonical_amplicon>
		<polymorphic_amplicon>GATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTAWACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17694</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>71177</contig_pos>
        <strand>+</strand>
        <context>GCTATCRCAC[G/T]TTTAGTAGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACAC</left_flank>
        <right_flank>TTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCTTTTCCATTTGTAATCAATTGATAACTTTTGAAAGTTTCTGAGGTCTTTATCCTTAACCCGTTAAAAGCTAAGAAGAAGAAGAGCAATCTAGTCCAAAATAA</canonical>
            <polymorphic>TGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACKTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCTTTTCCATTTGTAATCAATTGATAACTTTTGAAAGTTTCTGAGGTCTTTATCCTTAACCCGTTAAAAGCTAAGAAGAAGAAGAGCAATCTAGTCCAAAATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>498 381 82 39</canonical_bands>
                <polymorphic_bands>537 381 82</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTATCCCTCGTTGTACTG</pcr_primer_p1>
		<pcr_primer_p2>ACCGAGCATCCTAATAACTTAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGT</canonical_amplicon>
		<polymorphic_amplicon>GGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACKTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17695</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>71173</contig_pos>
        <strand>+</strand>
        <context>CCTAGCTATC[A/G]CACKTTTAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATC</left_flank>
        <right_flank>CACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCTTTTCCATTTGTAATCAATTGATAACTTTTGAAAGTTTCTGAGGTCTTTATCCTTAACCCGTTAAAAGCTAAGAAGAAGAAGAGCAATCTAGTCCAAA</canonical>
            <polymorphic>CTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCRCACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCTTTTCCATTTGTAATCAATTGATAACTTTTGAAAGTTTCTGAGGTCTTTATCCTTAACCCGTTAAAAGCTAAGAAGAAGAAGAGCAATCTAGTCCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>125 119 112 97 90 58 58 55 50 47 28 28 24 19 14 13 10 10 9 9 6 6 6 5 2</canonical_bands>
                <polymorphic_bands>125 121 112 97 90 58 58 55 50 47 28 28 24 19 14 13 10 10 9 9 6 6 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTATCCCTCGTTGTACTG</pcr_primer_p1>
		<pcr_primer_p2>ACCGAGCATCCTAATAACTTAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGT</canonical_amplicon>
		<polymorphic_amplicon>GGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCRCACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17696</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>71151</contig_pos>
        <strand>+</strand>
        <context>AGTCATTCGC[C/T]CTTCATGTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGC</left_flank>
        <right_flank>CTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCTTTTCCATTTGTAATCAATTGATAACTTTTGAAAGTTTCTGAGGTCTTTATCCTTAACCCGTTAAAAGCTAAGAAG</canonical>
            <polymorphic>AATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCYCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCTTTTCCATTTGTAATCAATTGATAACTTTTGAAAGTTTCTGAGGTCTTTATCCTTAACCCGTTAAAAGCTAAGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTATCCCTCGTTGTACTG</pcr_primer_p1>
		<pcr_primer_p2>ACCGAGCATCCTAATAACTTAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGT</canonical_amplicon>
		<polymorphic_amplicon>GGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCYCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17697</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>71126</contig_pos>
        <strand>+</strand>
        <context>TYGTTGCCAG[A/G]CCCGCCTCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAG</left_flank>
        <right_flank>CCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCTTTTCCATTTGTAATCAATTGATAACTTTTGAAAGTTTCTGAGGTCTTTAT</canonical>
            <polymorphic>TTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGRCCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCTTTTCCATTTGTAATCAATTGATAACTTTTGAAAGTTTCTGAGGTCTTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTATCCCTCGTTGTACTG</pcr_primer_p1>
		<pcr_primer_p2>ACCGAGCATCCTAATAACTTAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGT</canonical_amplicon>
		<polymorphic_amplicon>GGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGRCCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17698</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>71117</contig_pos>
        <strand>+</strand>
        <context>AGWWTATCGT[C/T]GTTGCCAGRC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGT</left_flank>
        <right_flank>GTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCTTTTCCATTTGTAATCAATTGATAACTTTTGAAAGTTTCTGA</canonical>
            <polymorphic>TCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTYGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCTTTTCCATTTGTAATCAATTGATAACTTTTGAAAGTTTCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTATCCCTCGTTGTACTG</pcr_primer_p1>
		<pcr_primer_p2>ACCGAGCATCCTAATAACTTAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGT</canonical_amplicon>
		<polymorphic_amplicon>GGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTYGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17699</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>71109</contig_pos>
        <strand></strand>
        <context>CGCAGGRRAG[A/T]WTATCGTYGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAG</left_flank>
        <right_flank>TTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCTTTTCCATTTGTAATCAATTGATAACTTTTGAAA</canonical>
            <polymorphic>TTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGWTTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCTTTTCCATTTGTAATCAATTGATAACTTTTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTATCCCTCGTTGTACTG</pcr_primer_p1>
		<pcr_primer_p2>ACCGAGCATCCTAATAACTTAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGT</canonical_amplicon>
		<polymorphic_amplicon>GGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGWTTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17700</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>71105</contig_pos>
        <strand></strand>
        <context>AAGACGCAGG[A/G]RAGWWTATCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGG</left_flank>
        <right_flank>AAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCTTTTCCATTTGTAATCAATTGATAACTTTT</canonical>
            <polymorphic>CTGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGRAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCTTTTCCATTTGTAATCAATTGATAACTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTATCCCTCGTTGTACTG</pcr_primer_p1>
		<pcr_primer_p2>ACCGAGCATCCTAATAACTTAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGT</canonical_amplicon>
		<polymorphic_amplicon>GGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGRAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17701</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>71075</contig_pos>
        <strand></strand>
        <context>AAAGTAAAAG[A/G]RGATACTGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAG</left_flank>
        <right_flank>AGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTGTTAATTTGTAGACTCCATTAAGTTTCTGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGC</canonical>
            <polymorphic>AGTTGTTAATTTGTAGACTCCATTAAGTTTCTGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGRAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTATCCCTCGTTGTACTG</pcr_primer_p1>
		<pcr_primer_p2>ACCGAGCATCCTAATAACTTAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGT</canonical_amplicon>
		<polymorphic_amplicon>GGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGRAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17702</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>71054</contig_pos>
        <strand>+</strand>
        <context>AAGCACCTCC[A/G]CGCAGAGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCC</left_flank>
        <right_flank>CGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAGCGAAATACTGATATGGAGTTGTTAATTTGTAGACTCCATTAAGTTTCTGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTA</canonical>
            <polymorphic>TGAAGCGAAATACTGATATGGAGTTGTTAATTTGTAGACTCCATTAAGTTTCTGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCRCGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>177 125 119 97 90 58 55 50 47 28 28 24 19 14 13 10 9 9 6 6 6 5 3 2</canonical_bands>
                <polymorphic_bands>177 125 125 97 90 58 55 50 47 28 28 24 19 14 13 10 9 9 6 6 5 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTATCCCTCGTTGTACTG</pcr_primer_p1>
		<pcr_primer_p2>ACCGAGCATCCTAATAACTTAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGT</canonical_amplicon>
		<polymorphic_amplicon>GGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCRCGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17703</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>71029</contig_pos>
        <strand>+</strand>
        <context>CACAGGAAAC[A/G]GACCAGAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAAC</left_flank>
        <right_flank>GACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGACCGGAAACTGTGTAGTTCTATGAAGCGAAATACTGATATGGAGTTGTTAATTTGTAGACTCCATTAAGTTTCTGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTA</canonical>
            <polymorphic>GTTGACCGGAAACTGTGTAGTTCTATGAAGCGAAATACTGATATGGAGTTGTTAATTTGTAGACTCCATTAAGTTTCTGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACRGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGAGATATAAAAGTAACTAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>ACCCGAAGAGAACACCTACTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGT</canonical_amplicon>
		<polymorphic_amplicon>GCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACRGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17704</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>70933</contig_pos>
        <strand>+</strand>
        <context>CTGAGAAYAG[A/T]GGAAGAGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAG</left_flank>
        <right_flank>GGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTTCAACCAATAACAACTTTATATGACATACTAAATTCTGAAATAGATTCAAACAACTTTTTCATGTCCTCTTTCTCTTCAACGTTTTTGAACTGTTGACCGGAAACTGTGTAGTTCTATGAAGCGAAATACTGATATGGAGTTGTTAATTTGTAGACTCCATTAAGTTTCTGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAA</canonical>
            <polymorphic>GCTTTCAACCAATAACAACTTTATATGACATACTAAATTCTGAAATAGATTCAAACAACTTTTTCATGTCCTCTTTCTCTTCAACGTTTTTGAACTGTTGACCGGAAACTGTGTAGTTCTATGAAGCGAAATACTGATATGGAGTTGTTAATTTGTAGACTCCATTAAGTTTCTGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGWGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATAAGCTTCTCTCAACAATTT</pcr_primer_p1>
		<pcr_primer_p2>GTGCGCCTCCTTAGTTACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCAC</canonical_amplicon>
		<polymorphic_amplicon>TCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGWGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17705</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>70930</contig_pos>
        <strand>+</strand>
        <context>CAACTGAGAA[C/T]AGWGGAAGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAA</left_flank>
        <right_flank>AGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGCTTTCAACCAATAACAACTTTATATGACATACTAAATTCTGAAATAGATTCAAACAACTTTTTCATGTCCTCTTTCTCTTCAACGTTTTTGAACTGTTGACCGGAAACTGTGTAGTTCTATGAAGCGAAATACTGATATGGAGTTGTTAATTTGTAGACTCCATTAAGTTTCTGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAAT</canonical>
            <polymorphic>TGAGCTTTCAACCAATAACAACTTTATATGACATACTAAATTCTGAAATAGATTCAAACAACTTTTTCATGTCCTCTTTCTCTTCAACGTTTTTGAACTGTTGACCGGAAACTGTGTAGTTCTATGAAGCGAAATACTGATATGGAGTTGTTAATTTGTAGACTCCATTAAGTTTCTGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAAYAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCATAAGCTTCTCTCAACAAT</pcr_primer_p1>
		<pcr_primer_p2>GCGCCTCCTTAGTTACTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGC</canonical_amplicon>
		<polymorphic_amplicon>TCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAAYAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17706</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>70903</contig_pos>
        <strand>+</strand>
        <context>ACGGGAAAGG[A/G]GCCAAAAGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGG</left_flank>
        <right_flank>GCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTACGAAAATTGATCTCGTTGGGATTTTGAGCTTTCAACCAATAACAACTTTATATGACATACTAAATTCTGAAATAGATTCAAACAACTTTTTCATGTCCTCTTTCTCTTCAACGTTTTTGAACTGTTGACCGGAAACTGTGTAGTTCTATGAAGCGAAATACTGATATGGAGTTGTTAATTTGTAGACTCCATTAAGTTTCTGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCAC</canonical>
            <polymorphic>GTACGAAAATTGATCTCGTTGGGATTTTGAGCTTTCAACCAATAACAACTTTATATGACATACTAAATTCTGAAATAGATTCAAACAACTTTTTCATGTCCTCTTTCTCTTCAACGTTTTTGAACTGTTGACCGGAAACTGTGTAGTTCTATGAAGCGAAATACTGATATGGAGTTGTTAATTTGTAGACTCCATTAAGTTTCTGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGRGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>307 236 127 116 96 31 31 26 21 9</canonical_bands>
                <polymorphic_bands>307 236 127 116 96 35 31 31 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCATAAGCTTCTCTCAACAAT</pcr_primer_p1>
		<pcr_primer_p2>CGCCTCCTTAGTTACTTTTATATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCG</canonical_amplicon>
		<polymorphic_amplicon>TCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGRGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17707</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>70852</contig_pos>
        <strand>+</strand>
        <context>CGTAGTCTGA[C/T]CCAAGCTCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGA</left_flank>
        <right_flank>CCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGTGACCATACATATTTTCTGACTATACTGTGTTCATAAAAACTTCAAAAGTACGAAAATTGATCTCGTTGGGATTTTGAGCTTTCAACCAATAACAACTTTATATGACATACTAAATTCTGAAATAGATTCAAACAACTTTTTCATGTCCTCTTTCTCTTCAACGTTTTTGAACTGTTGACCGGAAACTGTGTAGTTCTATGAAGCGAAATACTGATATGGAGTTGTTAATTTGTAGACTCCATTAAGTTTCTGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATA</canonical>
            <polymorphic>GGGTGACCATACATATTTTCTGACTATACTGTGTTCATAAAAACTTCAAAAGTACGAAAATTGATCTCGTTGGGATTTTGAGCTTTCAACCAATAACAACTTTATATGACATACTAAATTCTGAAATAGATTCAAACAACTTTTTCATGTCCTCTTTCTCTTCAACGTTTTTGAACTGTTGACCGGAAACTGTGTAGTTCTATGAAGCGAAATACTGATATGGAGTTGTTAATTTGTAGACTCCATTAAGTTTCTGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGAYCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>413 229 206 90 62</canonical_bands>
                <polymorphic_bands>642 206 90 62</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCATAAGCTTCTCTCAACAAT</pcr_primer_p1>
		<pcr_primer_p2>CGCCTCCTTAGTTACTTTTATATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCG</canonical_amplicon>
		<polymorphic_amplicon>TCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGAYCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17708</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>70803</contig_pos>
        <strand>+</strand>
        <context>CTCTGTTTAT[A/T]AGGTGACAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTAT</left_flank>
        <right_flank>AGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAGAACGTTCGCGTTCTCGCTTGTACGGCAACATGGAGTTATGGTAGGGGTGACCATACATATTTTCTGACTATACTGTGTTCATAAAAACTTCAAAAGTACGAAAATTGATCTCGTTGGGATTTTGAGCTTTCAACCAATAACAACTTTATATGACATACTAAATTCTGAAATAGATTCAAACAACTTTTTCATGTCCTCTTTCTCTTCAACGTTTTTGAACTGTTGACCGGAAACTGTGTAGTTCTATGAAGCGAAATACTGATATGGAGTTGTTAATTTGTAGACTCCATTAAGTTTCTGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATG</canonical>
            <polymorphic>AGAAGAACGTTCGCGTTCTCGCTTGTACGGCAACATGGAGTTATGGTAGGGGTGACCATACATATTTTCTGACTATACTGTGTTCATAAAAACTTCAAAAGTACGAAAATTGATCTCGTTGGGATTTTGAGCTTTCAACCAATAACAACTTTATATGACATACTAAATTCTGAAATAGATTCAAACAACTTTTTCATGTCCTCTTTCTCTTCAACGTTTTTGAACTGTTGACCGGAAACTGTGTAGTTCTATGAAGCGAAATACTGATATGGAGTTGTTAATTTGTAGACTCCATTAAGTTTCTGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATWAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>498 353 149</canonical_bands>
                <polymorphic_bands>647 353</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCATAAGCTTCTCTCAACAAT</pcr_primer_p1>
		<pcr_primer_p2>CGCCTCCTTAGTTACTTTTATATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCG</canonical_amplicon>
		<polymorphic_amplicon>TCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATWAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17709</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>176050</contig_pos>
        <strand>+</strand>
        <context>AATGTGGCAA[A/C]ATTTTGACCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGCCTTTAAATACAAACTTTAAAAAAGATTACTGTAGAAAAATGTGGCAA</left_flank>
        <right_flank>ATTTTGACCGGAATTTTAGCTGACAACGAAAATTTTGAATTTGAAAAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCACCGACTCATTTTTCGACGAATCGTTCGTCGGGCCGTTTATTACTAGTACTACACACTCTGCGTATCTTATCTCTCGCGTTCGATTTTTTTTGTTTGATTTTTTTGGTGGCAGATTTTATTGATTTTGGACATAAAAATGGACCCAAAGAAGAGAAATTTGGGTTGTTTTCTATCGATTTTTCGGTTTCTTTTGGTCCGTTTTGGACCCTTTTTTTTGGTTAAGTTTCAAATGTTCTTTTAATGCTAAACCCAATTTTAGATTTGAGTTTTGCGGACCATTTTTCATCGATTTTTTCCTTTAATTTTCGTCAATTTTTTAAAGCTGAGCAATTTCAAAATTTTCAGAAATGGCCGCCGAATCGGCAACGACTGAAACTGTGAATAAGAATGGAACGACTGGCGACGAGTCGACGGTCGAAATTAAAGGAAATGGAGAAACGGTAATGAGCCTTTAAATACAAACTTTAAAAAAGATTACTGTAGAAAAATGTGGCAAAATTTTGACCGGAATTTTAGCTGACAACGAAAATTTTGAATTTGAAAAAATTTCCGATGTAAAAAAGAAATTTTTAGAAAACTAACTGTGAAAAAAAAGAAAAATTCTCAAAATTCAATTTTTTCAAAAATCCAGAAATTTGACTTTCAAACTCAAAATTTTGTAATTTTAAGATTTTTAGAACTTTCGAGGATTACTGTACCTGAATTCTTATCATTTTTCATAAAAACTATCGAAAGTTGATACATTTTTGCTCTGAAAACCAATTTTCTGAAGAAAATCAAAAATTTCCCGAAATCTCAAATTTTCGGAATTTCTAAAAATATCATCATTTTCAATATTTTCCCACAGAGAAATATCGAAAATTGAATAATTTTGCTCTGAAATTCACATTTTCCAACCAAACTCATTTTTGGTTTACTGTAGATTTCATAGGTCAAGGATTACTGTAGCTACTACTAGGCTTTACAGCAGTTTTTCTGGTTACTGTAGCTTTTCTAT</canonical>
            <polymorphic>CCACCGACTCATTTTTCGACGAATCGTTCGTCGGGCCGTTTATTACTAGTACTACACACTCTGCGTATCTTATCTCTCGCGTTCGATTTTTTTTGTTTGATTTTTTTGGTGGCAGATTTTATTGATTTTGGACATAAAAATGGACCCAAAGAAGAGAAATTTGGGTTGTTTTCTATCGATTTTTCGGTTTCTTTTGGTCCGTTTTGGACCCTTTTTTTTGGTTAAGTTTCAAATGTTCTTTTAATGCTAAACCCAATTTTAGATTTGAGTTTTGCGGACCATTTTTCATCGATTTTTTCCTTTAATTTTCGTCAATTTTTTAAAGCTGAGCAATTTCAAAATTTTCAGAAATGGCCGCCGAATCGGCAACGACTGAAACTGTGAATAAGAATGGAACGACTGGCGACGAGTCGACGGTCGAAATTAAAGGAAATGGAGAAACGGTAATGAGCCTTTAAATACAAACTTTAAAAAAGATTACTGTAGAAAAATGTGGCAAMATTTTGACCGGAATTTTAGCTGACAACGAAAATTTTGAATTTGAAAAAATTTCCGATGTAAAAAAGAAATTTTTAGAAAACTAACTGTGAAAAAAAAGAAAAATTCTCAAAATTCAATTTTTTCAAAAATCCAGAAATTTGACTTTCAAACTCAAAATTTTGTAATTTTAAGATTTTTAGAACTTTCGAGGATTACTGTACCTGAATTCTTATCATTTTTCATAAAAACTATCGAAAGTTGATACATTTTTGCTCTGAAAACCAATTTTCTGAAGAAAATCAAAAATTTCCCGAAATCTCAAATTTTCGGAATTTCTAAAAATATCATCATTTTCAATATTTTCCCACAGAGAAATATCGAAAATTGAATAATTTTGCTCTGAAATTCACATTTTCCAACCAAACTCATTTTTGGTTTACTGTAGATTTCATAGGTCAAGGATTACTGTAGCTACTACTAGGCTTTACAGCAGTTTTTCTGGTTACTGTAGCTTTTCTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>182 160 157 117 80 73 49 34 25 20 20 19 17 12 10 9 9 7</canonical_bands>
                <polymorphic_bands>182 172 157 117 80 73 49 34 25 20 20 19 17 10 9 9 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>157 117 97 82 78 59 52 49 41 34 21 20 20 20 19 18 17 13 12 10 10 9 9 8 8 8 7 5</canonical_bands>
                <polymorphic_bands>157 117 97 90 82 59 52 49 41 34 21 20 20 20 19 18 17 13 10 10 9 9 8 8 8 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTAATGAGCCTTTAAATACAAAC</pcr_primer_p1>
		<pcr_primer_p2>AATCCTCGAAAGTTCTAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGTAATGAGCCTTTAAATACAAACTTTAAAAAAGATTACTGTAGAAAAATGTGGCAAAATTTTGACCGGAATTTTAGCTGACAACGAAAATTTTGAATTTGAAAAAATTTCCGATGTAAAAAAGAAATTTTTAGAAAACTAACTGTGAAAAAAAAGAAAAATTCTCAAAATTCAATTTTTTCAAAAATCCAGAAATTTGACTTTCAAACTCAAAATTTTGTAATTTTAAGATTTTTAGAACTTTCGAGGATT</canonical_amplicon>
		<polymorphic_amplicon>GGTAATGAGCCTTTAAATACAAACTTTAAAAAAGATTACTGTAGAAAAATGTGGCAAMATTTTGACCGGAATTTTAGCTGACAACGAAAATTTTGAATTTGAAAAAATTTCCGATGTAAAAAAGAAATTTTTAGAAAACTAACTGTGAAAAAAAAGAAAAATTCTCAAAATTCAATTTTTTCAAAAATCCAGAAATTTGACTTTCAAACTCAAAATTTTGTAATTTTAAGATTTTTAGAACTTTCGAGGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17713</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>176336</contig_pos>
        <strand></strand>
        <context>AAAATCAAAA[A/T]TTTCCCGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGTTGATACATTTTTGCTCTGAAAACCAATTTTCTGAAGAAAATCAAAA</left_flank>
        <right_flank>TTTCCCGAAATCTCAAATTTTCGGAATTTCTAAAAATATCATCATTTTCA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCGATTTTTTCCTTTAATTTTCGTCAATTTTTTAAAGCTGAGCAATTTCAAAATTTTCAGAAATGGCCGCCGAATCGGCAACGACTGAAACTGTGAATAAGAATGGAACGACTGGCGACGAGTCGACGGTCGAAATTAAAGGAAATGGAGAAACGGTAATGAGCCTTTAAATACAAACTTTAAAAAAGATTACTGTAGAAAAATGTGGCAAAATTTTGACCGGAATTTTAGCTGACAACGAAAATTTTGAATTTGAAAAAATTTCCGATGTAAAAAAGAAATTTTTAGAAAACTAACTGTGAAAAAAAAGAAAAATTCTCAAAATTCAATTTTTTCAAAAATCCAGAAATTTGACTTTCAAACTCAAAATTTTGTAATTTTAAGATTTTTAGAACTTTCGAGGATTACTGTACCTGAATTCTTATCATTTTTCATAAAAACTATCGAAAGTTGATACATTTTTGCTCTGAAAACCAATTTTCTGAAGAAAATCAAAAATTTCCCGAAATCTCAAATTTTCGGAATTTCTAAAAATATCATCATTTTCAATATTTTCCCACAGAGAAATATCGAAAATTGAATAATTTTGCTCTGAAATTCACATTTTCCAACCAAACTCATTTTTGGTTTACTGTAGATTTCATAGGTCAAGGATTACTGTAGCTACTACTAGGCTTTACAGCAGTTTTTCTGGTTACTGTAGCTTTTCTATTGAGGAACTACTGTACTTCCTTGTAGGGCTACTTTATTTTTTTCTAAAGATTTCATTCTTGGGTTGCTTTAGCTTTTTTAGGTCACTGTAGGACTACTGTAGGGTTACGGTAACATTAAGATTACTGTAGCTTAATTCTTTCAGACCTCTCCACCCCAAACAAACACCGCCAAAGCGTCTCCAGAAGAGGAAGAGGAGGATCTAACACCGGCCAAGAAGCGAACTGGTGGATCGGAGGATGAGAAAACGGAAAGTCGAGGTGAGCAACGGATTACTGTAGAACAAA</canonical>
            <polymorphic>CATCGATTTTTTCCTTTAATTTTCGTCAATTTTTTAAAGCTGAGCAATTTCAAAATTTTCAGAAATGGCCGCCGAATCGGCAACGACTGAAACTGTGAATAAGAATGGAACGACTGGCGACGAGTCGACGGTCGAAATTAAAGGAAATGGAGAAACGGTAATGAGCCTTTAAATACAAACTTTAAAAAAGATTACTGTAGAAAAATGTGGCAAAATTTTGACCGGAATTTTAGCTGACAACGAAAATTTTGAATTTGAAAAAATTTCCGATGTAAAAAAGAAATTTTTAGAAAACTAACTGTGAAAAAAAAGAAAAATTCTCAAAATTCAATTTTTTCAAAAATCCAGAAATTTGACTTTCAAACTCAAAATTTTGTAATTTTAAGATTTTTAGAACTTTCGAGGATTACTGTACCTGAATTCTTATCATTTTTCATAAAAACTATCGAAAGTTGATACATTTTTGCTCTGAAAACCAATTTTCTGAAGAAAATCAAAAWTTTCCCGAAATCTCAAATTTTCGGAATTTCTAAAAATATCATCATTTTCAATATTTTCCCACAGAGAAATATCGAAAATTGAATAATTTTGCTCTGAAATTCACATTTTCCAACCAAACTCATTTTTGGTTTACTGTAGATTTCATAGGTCAAGGATTACTGTAGCTACTACTAGGCTTTACAGCAGTTTTTCTGGTTACTGTAGCTTTTCTATTGAGGAACTACTGTACTTCCTTGTAGGGCTACTTTATTTTTTTCTAAAGATTTCATTCTTGGGTTGCTTTAGCTTTTTTAGGTCACTGTAGGACTACTGTAGGGTTACGGTAACATTAAGATTACTGTAGCTTAATTCTTTCAGACCTCTCCACCCCAAACAAACACCGCCAAAGCGTCTCCAGAAGAGGAAGAGGAGGATCTAACACCGGCCAAGAAGCGAACTGGTGGATCGGAGGATGAGAAAACGGAAAGTCGAGGTGAGCAACGGATTACTGTAGAACAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>403 160 80 73 53 49 34 25 20 20 19 17 12 10 9 9 7</canonical_bands>
                <polymorphic_bands>403 160 97 73 53 49 34 25 20 20 19 12 10 9 9 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>250 153 82 78 59 52 41 34 21 20 20 20 19 18 17 17 13 12 10 10 9 9 8 8 8 7 5</canonical_bands>
                <polymorphic_bands>250 153 82 78 59 52 41 38 34 20 20 20 19 18 17 13 12 10 10 9 9 8 8 8 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAATCCAGAAATTTGACTT</pcr_primer_p1>
		<pcr_primer_p2>TTCAATTTTCGATATTTCTCTGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATCCAGAAATTTGACTTTCAAACTCAAAATTTTGTAATTTTAAGATTTTTAGAACTTTCGAGGATTACTGTACCTGAATTCTTATCATTTTTCATAAAAACTATCGAAAGTTGATACATTTTTGCTCTGAAAACCAATTTTCTGAAGAAAATCAAAAATTTCCCGAAATCTCAAATTTTCGGAATTTCTAAAAATATCATCATTTTCAATATTTTCCCACAGAGAAATATCGAAAATTGAA</canonical_amplicon>
		<polymorphic_amplicon>CAAAAATCCAGAAATTTGACTTTCAAACTCAAAATTTTGTAATTTTAAGATTTTTAGAACTTTCGAGGATTACTGTACCTGAATTCTTATCATTTTTCATAAAAACTATCGAAAGTTGATACATTTTTGCTCTGAAAACCAATTTTCTGAAGAAAATCAAAAWTTTCCCGAAATCTCAAATTTTCGGAATTTCTAAAAATATCATCATTTTCAATATTTTCCCACAGAGAAATATCGAAAATTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17714</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>176456</contig_pos>
        <strand></strand>
        <context>CCAACCAAAC[T/C]CATTTTTGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TATCGAAAATTGAATAATTTTGCTCTGAAATTCACATTTTCCAACCAAAC</left_flank>
        <right_flank>CATTTTTGGTTTACTGTAGATTTCATAGGTCAAGGATTACTGTAGCTACT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGTCGACGGTCGAAATTAAAGGAAATGGAGAAACGGTAATGAGCCTTTAAATACAAACTTTAAAAAAGATTACTGTAGAAAAATGTGGCAAAATTTTGACCGGAATTTTAGCTGACAACGAAAATTTTGAATTTGAAAAAATTTCCGATGTAAAAAAGAAATTTTTAGAAAACTAACTGTGAAAAAAAAGAAAAATTCTCAAAATTCAATTTTTTCAAAAATCCAGAAATTTGACTTTCAAACTCAAAATTTTGTAATTTTAAGATTTTTAGAACTTTCGAGGATTACTGTACCTGAATTCTTATCATTTTTCATAAAAACTATCGAAAGTTGATACATTTTTGCTCTGAAAACCAATTTTCTGAAGAAAATCAAAAATTTCCCGAAATCTCAAATTTTCGGAATTTCTAAAAATATCATCATTTTCAATATTTTCCCACAGAGAAATATCGAAAATTGAATAATTTTGCTCTGAAATTCACATTTTCCAACCAAACTCATTTTTGGTTTACTGTAGATTTCATAGGTCAAGGATTACTGTAGCTACTACTAGGCTTTACAGCAGTTTTTCTGGTTACTGTAGCTTTTCTATTGAGGAACTACTGTACTTCCTTGTAGGGCTACTTTATTTTTTTCTAAAGATTTCATTCTTGGGTTGCTTTAGCTTTTTTAGGTCACTGTAGGACTACTGTAGGGTTACGGTAACATTAAGATTACTGTAGCTTAATTCTTTCAGACCTCTCCACCCCAAACAAACACCGCCAAAGCGTCTCCAGAAGAGGAAGAGGAGGATCTAACACCGGCCAAGAAGCGAACTGGTGGATCGGAGGATGAGAAAACGGAAAGTCGAGGTGAGCAACGGATTACTGTAGAACAAAAAATGACAGGCTTTGAGAAGCAAAATGAGCCAAAATTCGGAAAAATTGGTCCAATAGTTTTTATTATTTTTTGAAAACACTTTTTTTGAACTATTTTTATTTTTTGAGAGTTTTGGATTT</canonical>
            <polymorphic>CGAGTCGACGGTCGAAATTAAAGGAAATGGAGAAACGGTAATGAGCCTTTAAATACAAACTTTAAAAAAGATTACTGTAGAAAAATGTGGCAAAATTTTGACCGGAATTTTAGCTGACAACGAAAATTTTGAATTTGAAAAAATTTCCGATGTAAAAAAGAAATTTTTAGAAAACTAACTGTGAAAAAAAAGAAAAATTCTCAAAATTCAATTTTTTCAAAAATCCAGAAATTTGACTTTCAAACTCAAAATTTTGTAATTTTAAGATTTTTAGAACTTTCGAGGATTACTGTACCTGAATTCTTATCATTTTTCATAAAAACTATCGAAAGTTGATACATTTTTGCTCTGAAAACCAATTTTCTGAAGAAAATCAAAAATTTCCCGAAATCTCAAATTTTCGGAATTTCTAAAAATATCATCATTTTCAATATTTTCCCACAGAGAAATATCGAAAATTGAATAATTTTGCTCTGAAATTCACATTTTCCAACCAAACYCATTTTTGGTTTACTGTAGATTTCATAGGTCAAGGATTACTGTAGCTACTACTAGGCTTTACAGCAGTTTTTCTGGTTACTGTAGCTTTTCTATTGAGGAACTACTGTACTTCCTTGTAGGGCTACTTTATTTTTTTCTAAAGATTTCATTCTTGGGTTGCTTTAGCTTTTTTAGGTCACTGTAGGACTACTGTAGGGTTACGGTAACATTAAGATTACTGTAGCTTAATTCTTTCAGACCTCTCCACCCCAAACAAACACCGCCAAAGCGTCTCCAGAAGAGGAAGAGGAGGATCTAACACCGGCCAAGAAGCGAACTGGTGGATCGGAGGATGAGAAAACGGAAAGTCGAGGTGAGCAACGGATTACTGTAGAACAAAAAATGACAGGCTTTGAGAAGCAAAATGAGCCAAAATTCGGAAAAATTGGTCCAATAGTTTTTATTATTTTTTGAAAACACTTTTTTTGAACTATTTTTATTTTTTGAGAGTTTTGGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTGATACATTTTTGCTCTGAA</pcr_primer_p1>
		<pcr_primer_p2>GTAACCAGAAAAACTGCTGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTTGATACATTTTTGCTCTGAAAACCAATTTTCTGAAGAAAATCAAAAATTTCCCGAAATCTCAAATTTTCGGAATTTCTAAAAATATCATCATTTTCAATATTTTCCCACAGAGAAATATCGAAAATTGAATAATTTTGCTCTGAAATTCACATTTTCCAACCAAACTCATTTTTGGTTTACTGTAGATTTCATAGGTCAAGGATTACTGTAGCTACTACTAGGCTTTACAGCAGTTTTTCTGGTTAC</canonical_amplicon>
		<polymorphic_amplicon>AGTTGATACATTTTTGCTCTGAAAACCAATTTTCTGAAGAAAATCAAAAATTTCCCGAAATCTCAAATTTTCGGAATTTCTAAAAATATCATCATTTTCAATATTTTCCCACAGAGAAATATCGAAAATTGAATAATTTTGCTCTGAAATTCACATTTTCCAACCAAACYCATTTTTGGTTTACTGTAGATTTCATAGGTCAAGGATTACTGTAGCTACTACTAGGCTTTACAGCAGTTTTTCTGGTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17715</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>178407</contig_pos>
        <strand>+</strand>
        <context>AATGGAAAAG[A/G]AGCGCATGGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATAGCCCAGCGCAGTACCACTACATCACGAGCTCACACGAATGGAAAAG</left_flank>
        <right_flank>AGCGCATGGCGTATAGAAAGGGAGTGGTGGGTGGCGCCCCACAGGTCGCG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTGACAAAGTATGGATTCGATATTCGAATTAAGGAAGGCGAGACTCCAGATGACAAAGAGACGACAGCTCCAGAATCCACAGAAGACGATTCATCAGATGCACGTCATCTGAAACAGAAGCCGCGGCGAGTAACGTCTTCTGCAAACCGAGGGTCTTCTTCTGGAGGAGCACGTGGCGGTGGATCGAGGGGTACTGTAGGACGACGTCCGATGAAACAGAGGGAGCGAGAGGATACTGTAGATGAGTCGGAAGGCAAAGGAGATGAGGAAGAAGAAGCGCGGCCAGCACAGAAGAGGAATGTAAAGCAAGCGGAGAAACCGAGGAAGACGAGTGAGTTTTTTTGGGGAGGGCGGGGCTTGGTTGAGGTACTGTAGGTCTTTAAAAAGAAAAAAAAGAAAAAAAACGCCGTTTGGGTCGAACCAACAACCCCCAAAACTCAATTGATCGATAGCCCAGCGCAGTACCACTACATCACGAGCTCACACGAATGGAAAAGGAGCGCATGGCGTATAGAAAGGGAGTGGTGGGTGGCGCCCCACAGGTCGCGCATTGGGACCCACTGGAGTGGTGAAAATCGATGCCGTACAACCACTGTCAAGTTTGAGCTAATTTTTCTCGGCTCCTGTTCAAGATATCAAAACTGTGTTAACTGATAAAATGTTTGTGATATTATGATAAACATCTTATCAGTTGACATATCCTTGATATCTTTTACATAAACCGAGATACGTTGGCTCAAAGTTAAAAGTTAGTATTCTAAGATTCTGAAATTCTTAAATTTTGAAAATTTTCCAGAACCCGCTCCACCACAATCCAGCGAAGACAACGAAGAAGAAGAAGAAGACGATGAGGATCAAGGTGTTCGTCGTGGTCAACGTCGTGCCGTTCCTCTGCGACGTGGCACTTCTGGAGCGTCACGTCTTCGTGGTCGAATGAATCAAGGACCACCACGTCGCCATTCTGGGTCCCAAATGACGTCTTCTAGACAATCTCCACG</canonical>
            <polymorphic>TTGTGACAAAGTATGGATTCGATATTCGAATTAAGGAAGGCGAGACTCCAGATGACAAAGAGACGACAGCTCCAGAATCCACAGAAGACGATTCATCAGATGCACGTCATCTGAAACAGAAGCCGCGGCGAGTAACGTCTTCTGCAAACCGAGGGTCTTCTTCTGGAGGAGCACGTGGCGGTGGATCGAGGGGTACTGTAGGACGACGTCCGATGAAACAGAGGGAGCGAGAGGATACTGTAGATGAGTCGGAAGGCAAAGGAGATGAGGAAGAAGAAGCGCGGCCAGCACAGAAGAGGAATGTAAAGCAAGCGGAGAAACCGAGGAAGACGAGTGAGTTTTTTTGGGGAGGGCGGGGCTTGGTTGAGGTACTGTAGGTCTTTAAAAAGAAAAAAAAGAAAAAAAACGCCGTTTGGGTCGAACCAACAACCCCCAAAACTCAATTGATCGATAGCCCAGCGCAGTACCACTACATCACGAGCTCACACGAATGGAAAAGRAGCGCATGGCGTATAGAAAGGGAGTGGTGGGTGGCGCCCCACAGGTCGCGCATTGGGACCCACTGGAGTGGTGAAAATCGATGCCGTACAACCACTGTCAAGTTTGAGCTAATTTTTCTCGGCTCCTGTTCAAGATATCAAAACTGTGTTAACTGATAAAATGTTTGTGATATTATGATAAACATCTTATCAGTTGACATATCCTTGATATCTTTTACATAAACCGAGATACGTTGGCTCAAAGTTAAAAGTTAGTATTCTAAGATTCTGAAATTCTTAAATTTTGAAAATTTTCCAGAACCCGCTCCACCACAATCCAGCGAAGACAACGAAGAAGAAGAAGAAGACGATGAGGATCAAGGTGTTCGTCGTGGTCAACGTCGTGCCGTTCCTCTGCGACGTGGCACTTCTGGAGCGTCACGTCTTCGTGGTCGAATGAATCAAGGACCACCACGTCGCCATTCTGGGTCCCAAATGACGTCTTCTAGACAATCTCCACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGAAGACGAGTGAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAATTTAAGAATTTCAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>466</pcr_amplicon_size>
		<canonical_amplicon>GAGGAAGACGAGTGAGTTTTTTTGGGGAGGGCGGGGCTTGGTTGAGGTACTGTAGGTCTTTAAAAAGAAAAAAAAGAAAAAAAACGCCGTTTGGGTCGAACCAACAACCCCCAAAACTCAATTGATCGATAGCCCAGCGCAGTACCACTACATCACGAGCTCACACGAATGGAAAAGGAGCGCATGGCGTATAGAAAGGGAGTGGTGGGTGGCGCCCCACAGGTCGCGCATTGGGACCCACTGGAGTGGTGAAAATCGATGCCGTACAACCACTGTCAAGTTTGAGCTAATTTTTCTCGGCTCCTGTTCAAGATATCAAAACTGTGTTAACTGATAAAATGTTTGTGATATTATGATAAACATCTTATCAGTTGACATATCCTTGATATCTTTTACATAAACCGAGATACGTTGGCTCAAAGTTAAAAGTTAGTATTCTAAGATTCTGAAATTCTTAAATTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GAGGAAGACGAGTGAGTTTTTTTGGGGAGGGCGGGGCTTGGTTGAGGTACTGTAGGTCTTTAAAAAGAAAAAAAAGAAAAAAAACGCCGTTTGGGTCGAACCAACAACCCCCAAAACTCAATTGATCGATAGCCCAGCGCAGTACCACTACATCACGAGCTCACACGAATGGAAAAGRAGCGCATGGCGTATAGAAAGGGAGTGGTGGGTGGCGCCCCACAGGTCGCGCATTGGGACCCACTGGAGTGGTGAAAATCGATGCCGTACAACCACTGTCAAGTTTGAGCTAATTTTTCTCGGCTCCTGTTCAAGATATCAAAACTGTGTTAACTGATAAAATGTTTGTGATATTATGATAAACATCTTATCAGTTGACATATCCTTGATATCTTTTACATAAACCGAGATACGTTGGCTCAAAGTTAAAAGTTAGTATTCTAAGATTCTGAAATTCTTAAATTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17716</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>178390</contig_pos>
        <strand>+</strand>
        <context>CATCACGAGC[G/T]CACACGAATG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCAAAACTCAATTGATCGATAGCCCAGCGCAGTACCACTACATCACGAGC</left_flank>
        <right_flank>CACACGAATGGAAAAGGAGCGCATGGCGTATAGAAAGGGAGTGGTGGGTG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAGACCAAAAAACAAATTGTGACAAAGTATGGATTCGATATTCGAATTAAGGAAGGCGAGACTCCAGATGACAAAGAGACGACAGCTCCAGAATCCACAGAAGACGATTCATCAGATGCACGTCATCTGAAACAGAAGCCGCGGCGAGTAACGTCTTCTGCAAACCGAGGGTCTTCTTCTGGAGGAGCACGTGGCGGTGGATCGAGGGGTACTGTAGGACGACGTCCGATGAAACAGAGGGAGCGAGAGGATACTGTAGATGAGTCGGAAGGCAAAGGAGATGAGGAAGAAGAAGCGCGGCCAGCACAGAAGAGGAATGTAAAGCAAGCGGAGAAACCGAGGAAGACGAGTGAGTTTTTTTGGGGAGGGCGGGGCTTGGTTGAGGTACTGTAGGTCTTTAAAAAGAAAAAAAAGAAAAAAAACGCCGTTTGGGTCGAACCAACAACCCCCAAAACTCAATTGATCGATAGCCCAGCGCAGTACCACTACATCACGAGCTCACACGAATGGAAAAGGAGCGCATGGCGTATAGAAAGGGAGTGGTGGGTGGCGCCCCACAGGTCGCGCATTGGGACCCACTGGAGTGGTGAAAATCGATGCCGTACAACCACTGTCAAGTTTGAGCTAATTTTTCTCGGCTCCTGTTCAAGATATCAAAACTGTGTTAACTGATAAAATGTTTGTGATATTATGATAAACATCTTATCAGTTGACATATCCTTGATATCTTTTACATAAACCGAGATACGTTGGCTCAAAGTTAAAAGTTAGTATTCTAAGATTCTGAAATTCTTAAATTTTGAAAATTTTCCAGAACCCGCTCCACCACAATCCAGCGAAGACAACGAAGAAGAAGAAGAAGACGATGAGGATCAAGGTGTTCGTCGTGGTCAACGTCGTGCCGTTCCTCTGCGACGTGGCACTTCTGGAGCGTCACGTCTTCGTGGTCGAATGAATCAAGGACCACCACGTCGCCATTCTGGGTCCCAAATGACGTCT</canonical>
            <polymorphic>CAAGACCAAAAAACAAATTGTGACAAAGTATGGATTCGATATTCGAATTAAGGAAGGCGAGACTCCAGATGACAAAGAGACGACAGCTCCAGAATCCACAGAAGACGATTCATCAGATGCACGTCATCTGAAACAGAAGCCGCGGCGAGTAACGTCTTCTGCAAACCGAGGGTCTTCTTCTGGAGGAGCACGTGGCGGTGGATCGAGGGGTACTGTAGGACGACGTCCGATGAAACAGAGGGAGCGAGAGGATACTGTAGATGAGTCGGAAGGCAAAGGAGATGAGGAAGAAGAAGCGCGGCCAGCACAGAAGAGGAATGTAAAGCAAGCGGAGAAACCGAGGAAGACGAGTGAGTTTTTTTGGGGAGGGCGGGGCTTGGTTGAGGTACTGTAGGTCTTTAAAAAGAAAAAAAAGAAAAAAAACGCCGTTTGGGTCGAACCAACAACCCCCAAAACTCAATTGATCGATAGCCCAGCGCAGTACCACTACATCACGAGCKCACACGAATGGAAAAGGAGCGCATGGCGTATAGAAAGGGAGTGGTGGGTGGCGCCCCACAGGTCGCGCATTGGGACCCACTGGAGTGGTGAAAATCGATGCCGTACAACCACTGTCAAGTTTGAGCTAATTTTTCTCGGCTCCTGTTCAAGATATCAAAACTGTGTTAACTGATAAAATGTTTGTGATATTATGATAAACATCTTATCAGTTGACATATCCTTGATATCTTTTACATAAACCGAGATACGTTGGCTCAAAGTTAAAAGTTAGTATTCTAAGATTCTGAAATTCTTAAATTTTGAAAATTTTCCAGAACCCGCTCCACCACAATCCAGCGAAGACAACGAAGAAGAAGAAGAAGACGATGAGGATCAAGGTGTTCGTCGTGGTCAACGTCGTGCCGTTCCTCTGCGACGTGGCACTTCTGGAGCGTCACGTCTTCGTGGTCGAATGAATCAAGGACCACCACGTCGCCATTCTGGGTCCCAAATGACGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>412 375 127 86</canonical_bands>
                <polymorphic_bands>539 375 86</polymorphic_bands>
            </assay>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 310 190</canonical_bands>
                <polymorphic_bands>810 190</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>500 310 190</canonical_bands>
                <polymorphic_bands>810 190</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>246 162 127 115 96 86 74 53 27 14</canonical_bands>
                <polymorphic_bands>246 162 154 115 96 86 74 53 14</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGAAGACGAGTGAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAATTTAAGAATTTCAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>466</pcr_amplicon_size>
		<canonical_amplicon>GAGGAAGACGAGTGAGTTTTTTTGGGGAGGGCGGGGCTTGGTTGAGGTACTGTAGGTCTTTAAAAAGAAAAAAAAGAAAAAAAACGCCGTTTGGGTCGAACCAACAACCCCCAAAACTCAATTGATCGATAGCCCAGCGCAGTACCACTACATCACGAGCTCACACGAATGGAAAAGGAGCGCATGGCGTATAGAAAGGGAGTGGTGGGTGGCGCCCCACAGGTCGCGCATTGGGACCCACTGGAGTGGTGAAAATCGATGCCGTACAACCACTGTCAAGTTTGAGCTAATTTTTCTCGGCTCCTGTTCAAGATATCAAAACTGTGTTAACTGATAAAATGTTTGTGATATTATGATAAACATCTTATCAGTTGACATATCCTTGATATCTTTTACATAAACCGAGATACGTTGGCTCAAAGTTAAAAGTTAGTATTCTAAGATTCTGAAATTCTTAAATTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GAGGAAGACGAGTGAGTTTTTTTGGGGAGGGCGGGGCTTGGTTGAGGTACTGTAGGTCTTTAAAAAGAAAAAAAAGAAAAAAAACGCCGTTTGGGTCGAACCAACAACCCCCAAAACTCAATTGATCGATAGCCCAGCGCAGTACCACTACATCACGAGCKCACACGAATGGAAAAGGAGCGCATGGCGTATAGAAAGGGAGTGGTGGGTGGCGCCCCACAGGTCGCGCATTGGGACCCACTGGAGTGGTGAAAATCGATGCCGTACAACCACTGTCAAGTTTGAGCTAATTTTTCTCGGCTCCTGTTCAAGATATCAAAACTGTGTTAACTGATAAAATGTTTGTGATATTATGATAAACATCTTATCAGTTGACATATCCTTGATATCTTTTACATAAACCGAGATACGTTGGCTCAAAGTTAAAAGTTAGTATTCTAAGATTCTGAAATTCTTAAATTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17717</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>178321</contig_pos>
        <strand></strand>
        <context>WAACGCCGTT[T/G]GGGTCGAACC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTGAGGTACTGTAGGTCTTTAAAAAGAAAAAAAAGAAAAAAAACGCCGTT</left_flank>
        <right_flank>GGGTCGAACCAACAACCCCCAAAACTCAATTGATCGATAGCCCAGCGCAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTCGAAAAAGTCCCGAGCCGACGGTGACTGGAAACACGATCGTTTCGATGAGAAATTCCAGCGACCCAAGACCAAAAAACAAATTGTGACAAAGTATGGATTCGATATTCGAATTAAGGAAGGCGAGACTCCAGATGACAAAGAGACGACAGCTCCAGAATCCACAGAAGACGATTCATCAGATGCACGTCATCTGAAACAGAAGCCGCGGCGAGTAACGTCTTCTGCAAACCGAGGGTCTTCTTCTGGAGGAGCACGTGGCGGTGGATCGAGGGGTACTGTAGGACGACGTCCGATGAAACAGAGGGAGCGAGAGGATACTGTAGATGAGTCGGAAGGCAAAGGAGATGAGGAAGAAGAAGCGCGGCCAGCACAGAAGAGGAATGTAAAGCAAGCGGAGAAACCGAGGAAGACGAGTGAGTTTTTTTGGGGAGGGCGGGGCTTGGTTGAGGTACTGTAGGTCTTTAAAAAGAAAAAAAAGAAAAAAAACGCCGTTTGGGTCGAACCAACAACCCCCAAAACTCAATTGATCGATAGCCCAGCGCAGTACCACTACATCACGAGCTCACACGAATGGAAAAGGAGCGCATGGCGTATAGAAAGGGAGTGGTGGGTGGCGCCCCACAGGTCGCGCATTGGGACCCACTGGAGTGGTGAAAATCGATGCCGTACAACCACTGTCAAGTTTGAGCTAATTTTTCTCGGCTCCTGTTCAAGATATCAAAACTGTGTTAACTGATAAAATGTTTGTGATATTATGATAAACATCTTATCAGTTGACATATCCTTGATATCTTTTACATAAACCGAGATACGTTGGCTCAAAGTTAAAAGTTAGTATTCTAAGATTCTGAAATTCTTAAATTTTGAAAATTTTCCAGAACCCGCTCCACCACAATCCAGCGAAGACAACGAAGAAGAAGAAGAAGACGATGAGGATCAAGGTGTTCGTCGTGGTCAACGTCGTGCCGTTCCTCTGCGACGTGGCACTTCTGGA</canonical>
            <polymorphic>AAATTCGAAAAAGTCCCGAGCCGACGGTGACTGGAAACACGATCGTTTCGATGAGAAATTCCAGCGACCCAAGACCAAAAAACAAATTGTGACAAAGTATGGATTCGATATTCGAATTAAGGAAGGCGAGACTCCAGATGACAAAGAGACGACAGCTCCAGAATCCACAGAAGACGATTCATCAGATGCACGTCATCTGAAACAGAAGCCGCGGCGAGTAACGTCTTCTGCAAACCGAGGGTCTTCTTCTGGAGGAGCACGTGGCGGTGGATCGAGGGGTACTGTAGGACGACGTCCGATGAAACAGAGGGAGCGAGAGGATACTGTAGATGAGTCGGAAGGCAAAGGAGATGAGGAAGAAGAAGCGCGGCCAGCACAGAAGAGGAATGTAAAGCAAGCGGAGAAACCGAGGAAGACGAGTGAGTTTTTTTGGGGAGGGCGGGGCTTGGTTGAGGTACTGTAGGTCTTTAAAAAGAAAAAAAAGAAAAAAAACGCCGTTKGGGTCGAACCAACAACCCCCAAAACTCAATTGATCGATAGCCCAGCGCAGTACCACTACATCACGAGCTCACACGAATGGAAAAGGAGCGCATGGCGTATAGAAAGGGAGTGGTGGGTGGCGCCCCACAGGTCGCGCATTGGGACCCACTGGAGTGGTGAAAATCGATGCCGTACAACCACTGTCAAGTTTGAGCTAATTTTTCTCGGCTCCTGTTCAAGATATCAAAACTGTGTTAACTGATAAAATGTTTGTGATATTATGATAAACATCTTATCAGTTGACATATCCTTGATATCTTTTACATAAACCGAGATACGTTGGCTCAAAGTTAAAAGTTAGTATTCTAAGATTCTGAAATTCTTAAATTTTGAAAATTTTCCAGAACCCGCTCCACCACAATCCAGCGAAGACAACGAAGAAGAAGAAGAAGACGATGAGGATCAAGGTGTTCGTCGTGGTCAACGTCGTGCCGTTCCTCTGCGACGTGGCACTTCTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGAGGATACTGTAGATGAGTC</pcr_primer_p1>
		<pcr_primer_p2>TCGTGATGTAGTGGTACTGC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CGAGAGGATACTGTAGATGAGTCGGAAGGCAAAGGAGATGAGGAAGAAGAAGCGCGGCCAGCACAGAAGAGGAATGTAAAGCAAGCGGAGAAACCGAGGAAGACGAGTGAGTTTTTTTGGGGAGGGCGGGGCTTGGTTGAGGTACTGTAGGTCTTTAAAAAGAAAAAAAAGAAAAAAAACGCCGTTTGGGTCGAACCAACAACCCCCAAAACTCAATTGATCGATAGCCCAGCGCAGTACCACTACATCACGA</canonical_amplicon>
		<polymorphic_amplicon>CGAGAGGATACTGTAGATGAGTCGGAAGGCAAAGGAGATGAGGAAGAAGAAGCGCGGCCAGCACAGAAGAGGAATGTAAAGCAAGCGGAGAAACCGAGGAAGACGAGTGAGTTTTTTTGGGGAGGGCGGGGCTTGGTTGAGGTACTGTAGGTCTTTAAAAAGAAAAAAAAGAAAAAAAACGCCGTTKGGGTCGAACCAACAACCCCCAAAACTCAATTGATCGATAGCCCAGCGCAGTACCACTACATCACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17718</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>178311</contig_pos>
        <strand></strand>
        <context>AAAAKAAAAA[A/T]AACGCCGTTK</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGGGGCTTGGTTGAGGTACTGTAGGTCTTTAAAAAGAAAAAAAAGAAAAA</left_flank>
        <right_flank>AACGCCGTTTGGGTCGAACCAACAACCCCCAAAACTCAATTGATCGATAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGATCGTCGAAATTCGAAAAAGTCCCGAGCCGACGGTGACTGGAAACACGATCGTTTCGATGAGAAATTCCAGCGACCCAAGACCAAAAAACAAATTGTGACAAAGTATGGATTCGATATTCGAATTAAGGAAGGCGAGACTCCAGATGACAAAGAGACGACAGCTCCAGAATCCACAGAAGACGATTCATCAGATGCACGTCATCTGAAACAGAAGCCGCGGCGAGTAACGTCTTCTGCAAACCGAGGGTCTTCTTCTGGAGGAGCACGTGGCGGTGGATCGAGGGGTACTGTAGGACGACGTCCGATGAAACAGAGGGAGCGAGAGGATACTGTAGATGAGTCGGAAGGCAAAGGAGATGAGGAAGAAGAAGCGCGGCCAGCACAGAAGAGGAATGTAAAGCAAGCGGAGAAACCGAGGAAGACGAGTGAGTTTTTTTGGGGAGGGCGGGGCTTGGTTGAGGTACTGTAGGTCTTTAAAAAGAAAAAAAAGAAAAAAAACGCCGTTTGGGTCGAACCAACAACCCCCAAAACTCAATTGATCGATAGCCCAGCGCAGTACCACTACATCACGAGCTCACACGAATGGAAAAGGAGCGCATGGCGTATAGAAAGGGAGTGGTGGGTGGCGCCCCACAGGTCGCGCATTGGGACCCACTGGAGTGGTGAAAATCGATGCCGTACAACCACTGTCAAGTTTGAGCTAATTTTTCTCGGCTCCTGTTCAAGATATCAAAACTGTGTTAACTGATAAAATGTTTGTGATATTATGATAAACATCTTATCAGTTGACATATCCTTGATATCTTTTACATAAACCGAGATACGTTGGCTCAAAGTTAAAAGTTAGTATTCTAAGATTCTGAAATTCTTAAATTTTGAAAATTTTCCAGAACCCGCTCCACCACAATCCAGCGAAGACAACGAAGAAGAAGAAGAAGACGATGAGGATCAAGGTGTTCGTCGTGGTCAACGTCGTGCCGTTCCTCTGCGACGTGG</canonical>
            <polymorphic>ATGATCGTCGAAATTCGAAAAAGTCCCGAGCCGACGGTGACTGGAAACACGATCGTTTCGATGAGAAATTCCAGCGACCCAAGACCAAAAAACAAATTGTGACAAAGTATGGATTCGATATTCGAATTAAGGAAGGCGAGACTCCAGATGACAAAGAGACGACAGCTCCAGAATCCACAGAAGACGATTCATCAGATGCACGTCATCTGAAACAGAAGCCGCGGCGAGTAACGTCTTCTGCAAACCGAGGGTCTTCTTCTGGAGGAGCACGTGGCGGTGGATCGAGGGGTACTGTAGGACGACGTCCGATGAAACAGAGGGAGCGAGAGGATACTGTAGATGAGTCGGAAGGCAAAGGAGATGAGGAAGAAGAAGCGCGGCCAGCACAGAAGAGGAATGTAAAGCAAGCGGAGAAACCGAGGAAGACGAGTGAGTTTTTTTGGGGAGGGCGGGGCTTGGTTGAGGTACTGTAGGTCTTTAAAAAGAAAAAAAAGAAAAAWAACGCCGTTTGGGTCGAACCAACAACCCCCAAAACTCAATTGATCGATAGCCCAGCGCAGTACCACTACATCACGAGCTCACACGAATGGAAAAGGAGCGCATGGCGTATAGAAAGGGAGTGGTGGGTGGCGCCCCACAGGTCGCGCATTGGGACCCACTGGAGTGGTGAAAATCGATGCCGTACAACCACTGTCAAGTTTGAGCTAATTTTTCTCGGCTCCTGTTCAAGATATCAAAACTGTGTTAACTGATAAAATGTTTGTGATATTATGATAAACATCTTATCAGTTGACATATCCTTGATATCTTTTACATAAACCGAGATACGTTGGCTCAAAGTTAAAAGTTAGTATTCTAAGATTCTGAAATTCTTAAATTTTGAAAATTTTCCAGAACCCGCTCCACCACAATCCAGCGAAGACAACGAAGAAGAAGAAGAAGACGATGAGGATCAAGGTGTTCGTCGTGGTCAACGTCGTGCCGTTCCTCTGCGACGTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGAGGATACTGTAGATGAGTC</pcr_primer_p1>
		<pcr_primer_p2>TCGTGATGTAGTGGTACTGC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CGAGAGGATACTGTAGATGAGTCGGAAGGCAAAGGAGATGAGGAAGAAGAAGCGCGGCCAGCACAGAAGAGGAATGTAAAGCAAGCGGAGAAACCGAGGAAGACGAGTGAGTTTTTTTGGGGAGGGCGGGGCTTGGTTGAGGTACTGTAGGTCTTTAAAAAGAAAAAAAAGAAAAAAAACGCCGTTTGGGTCGAACCAACAACCCCCAAAACTCAATTGATCGATAGCCCAGCGCAGTACCACTACATCACGA</canonical_amplicon>
		<polymorphic_amplicon>CGAGAGGATACTGTAGATGAGTCGGAAGGCAAAGGAGATGAGGAAGAAGAAGCGCGGCCAGCACAGAAGAGGAATGTAAAGCAAGCGGAGAAACCGAGGAAGACGAGTGAGTTTTTTTGGGGAGGGCGGGGCTTGGTTGAGGTACTGTAGGTCTTTAAAAAGAAAAAAAAGAAAAAWAACGCCGTTTGGGTCGAACCAACAACCCCCAAAACTCAATTGATCGATAGCCCAGCGCAGTACCACTACATCACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17719</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>178305</contig_pos>
        <strand></strand>
        <context>AGAAAAAAAA[G/T]AAAAAWAACG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGAGGGCGGGGCTTGGTTGAGGTACTGTAGGTCTTTAAAAAGAAAAAAAA</left_flank>
        <right_flank>AAAAAAAACGCCGTTTGGGTCGAACCAACAACCCCCAAAACTCAATTGAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAGCGATGATCGTCGAAATTCGAAAAAGTCCCGAGCCGACGGTGACTGGAAACACGATCGTTTCGATGAGAAATTCCAGCGACCCAAGACCAAAAAACAAATTGTGACAAAGTATGGATTCGATATTCGAATTAAGGAAGGCGAGACTCCAGATGACAAAGAGACGACAGCTCCAGAATCCACAGAAGACGATTCATCAGATGCACGTCATCTGAAACAGAAGCCGCGGCGAGTAACGTCTTCTGCAAACCGAGGGTCTTCTTCTGGAGGAGCACGTGGCGGTGGATCGAGGGGTACTGTAGGACGACGTCCGATGAAACAGAGGGAGCGAGAGGATACTGTAGATGAGTCGGAAGGCAAAGGAGATGAGGAAGAAGAAGCGCGGCCAGCACAGAAGAGGAATGTAAAGCAAGCGGAGAAACCGAGGAAGACGAGTGAGTTTTTTTGGGGAGGGCGGGGCTTGGTTGAGGTACTGTAGGTCTTTAAAAAGAAAAAAAAGAAAAAAAACGCCGTTTGGGTCGAACCAACAACCCCCAAAACTCAATTGATCGATAGCCCAGCGCAGTACCACTACATCACGAGCTCACACGAATGGAAAAGGAGCGCATGGCGTATAGAAAGGGAGTGGTGGGTGGCGCCCCACAGGTCGCGCATTGGGACCCACTGGAGTGGTGAAAATCGATGCCGTACAACCACTGTCAAGTTTGAGCTAATTTTTCTCGGCTCCTGTTCAAGATATCAAAACTGTGTTAACTGATAAAATGTTTGTGATATTATGATAAACATCTTATCAGTTGACATATCCTTGATATCTTTTACATAAACCGAGATACGTTGGCTCAAAGTTAAAAGTTAGTATTCTAAGATTCTGAAATTCTTAAATTTTGAAAATTTTCCAGAACCCGCTCCACCACAATCCAGCGAAGACAACGAAGAAGAAGAAGAAGACGATGAGGATCAAGGTGTTCGTCGTGGTCAACGTCGTGCCGTTCCTCTGCG</canonical>
            <polymorphic>GCAGCGATGATCGTCGAAATTCGAAAAAGTCCCGAGCCGACGGTGACTGGAAACACGATCGTTTCGATGAGAAATTCCAGCGACCCAAGACCAAAAAACAAATTGTGACAAAGTATGGATTCGATATTCGAATTAAGGAAGGCGAGACTCCAGATGACAAAGAGACGACAGCTCCAGAATCCACAGAAGACGATTCATCAGATGCACGTCATCTGAAACAGAAGCCGCGGCGAGTAACGTCTTCTGCAAACCGAGGGTCTTCTTCTGGAGGAGCACGTGGCGGTGGATCGAGGGGTACTGTAGGACGACGTCCGATGAAACAGAGGGAGCGAGAGGATACTGTAGATGAGTCGGAAGGCAAAGGAGATGAGGAAGAAGAAGCGCGGCCAGCACAGAAGAGGAATGTAAAGCAAGCGGAGAAACCGAGGAAGACGAGTGAGTTTTTTTGGGGAGGGCGGGGCTTGGTTGAGGTACTGTAGGTCTTTAAAAAGAAAAAAAAKAAAAAAAACGCCGTTTGGGTCGAACCAACAACCCCCAAAACTCAATTGATCGATAGCCCAGCGCAGTACCACTACATCACGAGCTCACACGAATGGAAAAGGAGCGCATGGCGTATAGAAAGGGAGTGGTGGGTGGCGCCCCACAGGTCGCGCATTGGGACCCACTGGAGTGGTGAAAATCGATGCCGTACAACCACTGTCAAGTTTGAGCTAATTTTTCTCGGCTCCTGTTCAAGATATCAAAACTGTGTTAACTGATAAAATGTTTGTGATATTATGATAAACATCTTATCAGTTGACATATCCTTGATATCTTTTACATAAACCGAGATACGTTGGCTCAAAGTTAAAAGTTAGTATTCTAAGATTCTGAAATTCTTAAATTTTGAAAATTTTCCAGAACCCGCTCCACCACAATCCAGCGAAGACAACGAAGAAGAAGAAGAAGACGATGAGGATCAAGGTGTTCGTCGTGGTCAACGTCGTGCCGTTCCTCTGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGAGGATACTGTAGATGAGTC</pcr_primer_p1>
		<pcr_primer_p2>TCGTGATGTAGTGGTACTGC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CGAGAGGATACTGTAGATGAGTCGGAAGGCAAAGGAGATGAGGAAGAAGAAGCGCGGCCAGCACAGAAGAGGAATGTAAAGCAAGCGGAGAAACCGAGGAAGACGAGTGAGTTTTTTTGGGGAGGGCGGGGCTTGGTTGAGGTACTGTAGGTCTTTAAAAAGAAAAAAAAGAAAAAAAACGCCGTTTGGGTCGAACCAACAACCCCCAAAACTCAATTGATCGATAGCCCAGCGCAGTACCACTACATCACGA</canonical_amplicon>
		<polymorphic_amplicon>CGAGAGGATACTGTAGATGAGTCGGAAGGCAAAGGAGATGAGGAAGAAGAAGCGCGGCCAGCACAGAAGAGGAATGTAAAGCAAGCGGAGAAACCGAGGAAGACGAGTGAGTTTTTTTGGGGAGGGCGGGGCTTGGTTGAGGTACTGTAGGTCTTTAAAAAGAAAAAAAAKAAAAAAAACGCCGTTTGGGTCGAACCAACAACCCCCAAAACTCAATTGATCGATAGCCCAGCGCAGTACCACTACATCACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17720</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>178032</contig_pos>
        <strand></strand>
        <context>AACAGAAGCC[G/A]CGGCGAGTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAATCCACAGAAGACGATTCATCAGATGCACGTCATCTGAAACAGAAGCC</left_flank>
        <right_flank>CGGCGAGTAACGTCTTCTGCAAACCGAGGGTCTTCTTCTGGAGGAGCACG</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGGGCAAAGAGAAAGCGCGCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCTCCACCTTTAAGAGATTTTCGGAATCTCAGAATTTCAGAATTTTCAAATTCTAGTCCCTAAAATCCTAATCTCAGAATCTGAATTCTGAATCTCAGGCTTCGCGATTCAAAAAGATTACTGTACTTTTTTGCAGCGATGATCGTCGAAATTCGAAAAAGTCCCGAGCCGACGGTGACTGGAAACACGATCGTTTCGATGAGAAATTCCAGCGACCCAAGACCAAAAAACAAATTGTGACAAAGTATGGATTCGATATTCGAATTAAGGAAGGCGAGACTCCAGATGACAAAGAGACGACAGCTCCAGAATCCACAGAAGACGATTCATCAGATGCACGTCATCTGAAACAGAAGCCGCGGCGAGTAACGTCTTCTGCAAACCGAGGGTCTTCTTCTGGAGGAGCACGTGGCGGTGGATCGAGGGGTACTGTAGGACGACGTCCGATGAAACAGAGGGAGCGAGAGGATACTGTAGATGAGTCGGAAGGCAAAGGAGATGAGGAAGAAGAAGCGCGGCCAGCACAGAAGAGGAATGTAAAGCAAGCGGAGAAACCGAGGAAGACGAGTGAGTTTTTTTGGGGAGGGCGGGGCTTGGTTGAGGTACTGTAGGTCTTTAAAAAGAAAAAAAAGAAAAAAAACGCCGTTTGGGTCGAACCAACAACCCCCAAAACTCAATTGATCGATAGCCCAGCGCAGTACCACTACATCACGAGCTCACACGAATGGAAAAGGAGCGCATGGCGTATAGAAAGGGAGTGGTGGGTGGCGCCCCACAGGTCGCGCATTGGGACCCACTGGAGTGGTGAAAATCGATGCCGTACAACCACTGTCAAGTTTGAGCTAATTTTTCTCGGCTC</canonical>
            <polymorphic>GCGGGCAAAGAGAAAGCGCGCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCTCCACCTTTAAGAGATTTTCGGAATCTCAGAATTTCAGAATTTTCAAATTCTAGTCCCTAAAATCCTAATCTCAGAATCTGAATTCTGAATCTCAGGCTTCGCGATTCAAAAAGATTACTGTACTTTTTTGCAGCGATGATCGTCGAAATTCGAAAAAGTCCCGAGCCGACGGTGACTGGAAACACGATCGTTTCGATGAGAAATTCCAGCGACCCAAGACCAAAAAACAAATTGTGACAAAGTATGGATTCGATATTCGAATTAAGGAAGGCGAGACTCCAGATGACAAAGAGACGACAGCTCCAGAATCCACAGAAGACGATTCATCAGATGCACGTCATCTGAAACAGAAGCCRCGGCGAGTAACGTCTTCTGCAAACCGAGGGTCTTCTTCTGGAGGAGCACGTGGCGGTGGATCGAGGGGTACTGTAGGACGACGTCCGATGAAACAGAGGGAGCGAGAGGATACTGTAGATGAGTCGGAAGGCAAAGGAGATGAGGAAGAAGAAGCGCGGCCAGCACAGAAGAGGAATGTAAAGCAAGCGGAGAAACCGAGGAAGACGAGTGAGTTTTTTTGGGGAGGGCGGGGCTTGGTTGAGGTACTGTAGGTCTTTAAAAAGAAAAAAAAGAAAAAAAACGCCGTTTGGGTCGAACCAACAACCCCCAAAACTCAATTGATCGATAGCCCAGCGCAGTACCACTACATCACGAGCTCACACGAATGGAAAAGGAGCGCATGGCGTATAGAAAGGGAGTGGTGGGTGGCGCCCCACAGGTCGCGCATTGGGACCCACTGGAGTGGTGAAAATCGATGCCGTACAACCACTGTCAAGTTTGAGCTAATTTTTCTCGGCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>267 255 225 156 77 18 2</canonical_bands>
                <polymorphic_bands>411 267 225 77 18 2</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>498 273 175 54</canonical_bands>
                <polymorphic_bands>552 273 175</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>341 277 223 159</canonical_bands>
                <polymorphic_bands>382 341 277</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGCGG</site>
                <isoschizomers>
                    <enzyme>Cfr42I</enzyme>
                    <enzyme>KspI</enzyme>
                    <enzyme>SacII</enzyme>
                    <enzyme>Sfr303I</enzyme>
                    <enzyme>SgrBI</enzyme>
                    <enzyme>SstII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>500 446 54</canonical_bands>
                <polymorphic_bands>946 54</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>500 341 159</canonical_bands>
                <polymorphic_bands>659 341</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTGTGACAAAGTATGGATTC</pcr_primer_p1>
		<pcr_primer_p2>CGACTCATCTACAGTATCCTCTC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AAATTGTGACAAAGTATGGATTCGATATTCGAATTAAGGAAGGCGAGACTCCAGATGACAAAGAGACGACAGCTCCAGAATCCACAGAAGACGATTCATCAGATGCACGTCATCTGAAACAGAAGCCGCGGCGAGTAACGTCTTCTGCAAACCGAGGGTCTTCTTCTGGAGGAGCACGTGGCGGTGGATCGAGGGGTACTGTAGGACGACGTCCGATGAAACAGAGGGAGCGAGAGGATACTGTAGATGAGTCG</canonical_amplicon>
		<polymorphic_amplicon>AAATTGTGACAAAGTATGGATTCGATATTCGAATTAAGGAAGGCGAGACTCCAGATGACAAAGAGACGACAGCTCCAGAATCCACAGAAGACGATTCATCAGATGCACGTCATCTGAAACAGAAGCCRCGGCGAGTAACGTCTTCTGCAAACCGAGGGTCTTCTTCTGGAGGAGCACGTGGCGGTGGATCGAGGGGTACTGTAGGACGACGTCCGATGAAACAGAGGGAGCGAGAGGATACTGTAGATGAGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17721</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>33702</contig_pos>
        <strand></strand>
        <context>CTGTGATTGT[G/A]TGCTCTACCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATCTGGTGTGTCTGGCTCAACGCCTTCTTCGAAATGTCAGCTGTGATTGT</left_flank>
        <right_flank>TGCTCTACCTACATGCCAATCTATTTCCACGAAGTTCTCGGATTTGGAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTGCGTTTATCCTGTTCAAAGCTAGGTTAATTACAACATCTATCAAAGCTAGCGAATTCCATAAGCTGAAATATACAATTTCCAGGGTCTCGCCTATTCCGCCGACTTCGCCGCCATCGGTCTCATCACTGTTCGCTGGGCACCTCTCACCGAAACCGCCACCTTCATCGCTGTCATGACCTCATTCACAGGCATCTCGTCAACTGCTACCAACTCCGTGACAGGTGTCATCTGCGAAAGCTCACTCGGATGGAAATGGTCGTATTACCTTCACGCCGCCGTCGGATTGTTCCTCTTCTGCCTTTGGTACATCGTATATATCGATCATCCACAGGACACCAAACGAGTCTCCTGCAAAGAATTGAGCAAAATCGAAAAGTCCAAATCTGCAGCCCATCTTGATAAGAGTACCGATGTTCCATATGGCAAACTTCTAACCAGCCCAGTCATCTGGTGTGTCTGGCTCAACGCCTTCTTCGAAATGTCAGCTGTGATTGTGTGCTCTACCTACATGCCAATCTATTTCCACGAAGTTCTCGGATTTGGAGTCACTGAAACCGGATTCTGGGTTGCTTTGGTTCTCTTCATCTGGCTTCCTGTCCGATGGGTATCTGCTGTCATGAGTGACAAAATGACTTGCGTCGGAGAGCGAGCTAAAATGCTCATGTTCAATACTGTAGCTGTCGGAGGTACTGGAGTATTTTTCGCTGTTATTGGATTCATCCCAGCTGAGAACAAGTACTGGTCGGTGGCTGCGTTCACTATGACCATGTGCTGTGTTGGTGTCAATTCTGGAGGTTTCTACAAGTGTGGTGTTCTTCATGCCCGGTAAGTATCTAGGTTGTGAATCTAAGCAGGGATCGCTTTCTGAGATTTTTCGAAACTTCTTTAGGCCATTTTTTATTTCTCTTATTCCAGTCAATACGCCCACGTCGTCATCGCTGCTATCCAATGGACCAAATGCGTGGCTCTTTTCTCGGCTCCAGCCATGGTTGCCCT</canonical>
            <polymorphic>ACTGCGTTTATCCTGTTCAAAGCTAGGTTAATTACAACATCTATCAAAGCTAGCGAATTCCATAAGCTGAAATATACAATTTCCAGGGTCTCGCCTATTCCGCCGACTTCGCCGCCATCGGTCTCATCACTGTTCGCTGGGCACCTCTCACCGAAACCGCCACCTTCATCGCTGTCATGACCTCATTCACAGGCATCTCGTCAACTGCTACCAACTCCGTGACAGGTGTCATCTGCGAAAGCTCACTCGGATGGAAATGGTCGTATTACCTTCACGCCGCCGTCGGATTGTTCCTCTTCTGCCTTTGGTACATCGTATATATCGATCATCCACAGGACACCAAACGAGTCTCCTGCAAAGAATTGAGCAAAATCGAAAAGTCCAAATCTGCAGCCCATCTTGATAAGAGTACCGATGTTCCATATGGCAAACTTCTAACCAGCCCAGTCATCTGGTGTGTCTGGCTCAACGCCTTCTTCGAAATGTCAGCTGTGATTGTRTGCTCTACCTACATGCCAATCTATTTCCACGAAGTTCTCGGATTTGGAGTCACTGAAACCGGATTCTGGGTTGCTTTGGTTCTCTTCATCTGGCTTCCTGTCCGATGGGTATCTGCTGTCATGAGTGACAAAATGACTTGCGTCGGAGAGCGAGCTAAAATGCTCATGTTCAATACTGTAGCTGTCGGAGGTACTGGAGTATTTTTCGCTGTTATTGGATTCATCCCAGCTGAGAACAAGTACTGGTCGGTGGCTGCGTTCACTATGACCATGTGCTGTGTTGGTGTCAATTCTGGAGGTTTCTACAAGTGTGGTGTTCTTCATGCCCGGTAAGTATCTAGGTTGTGAATCTAAGCAGGGATCGCTTTCTGAGATTTTTCGAAACTTCTTTAGGCCATTTTTTATTTCTCTTATTCCAGTCAATACGCCCACGTCGTCATCGCTGCTATCCAATGGACCAAATGCGTGGCTCTTTTCTCGGCTCCAGCCATGGTTGCCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>496 361 143</canonical_bands>
                <polymorphic_bands>857 143</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>129 125 118 84 75 58 37 35 32 32 31 29 27 27 25 23 17 14 13 12 10 7 7 7 6 6 5 3 2 2 2</canonical_bands>
                <polymorphic_bands>129 125 118 84 75 58 37 35 35 32 32 31 29 27 25 23 17 14 13 12 10 7 7 7 6 5 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATCTTGATAAGAGTACCGATGT</pcr_primer_p1>
		<pcr_primer_p2>GCAAGTCATTTTGTCACTCAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CATCTTGATAAGAGTACCGATGTTCCATATGGCAAACTTCTAACCAGCCCAGTCATCTGGTGTGTCTGGCTCAACGCCTTCTTCGAAATGTCAGCTGTGATTGTGTGCTCTACCTACATGCCAATCTATTTCCACGAAGTTCTCGGATTTGGAGTCACTGAAACCGGATTCTGGGTTGCTTTGGTTCTCTTCATCTGGCTTCCTGTCCGATGGGTATCTGCTGTCATGAGTGACAAAATGACTTGC</canonical_amplicon>
		<polymorphic_amplicon>CATCTTGATAAGAGTACCGATGTTCCATATGGCAAACTTCTAACCAGCCCAGTCATCTGGTGTGTCTGGCTCAACGCCTTCTTCGAAATGTCAGCTGTGATTGTRTGCTCTACCTACATGCCAATCTATTTCCACGAAGTTCTCGGATTTGGAGTCACTGAAACCGGATTCTGGGTTGCTTTGGTTCTCTTCATCTGGCTTCCTGTCCGATGGGTATCTGCTGTCATGAGTGACAAAATGACTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17722</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>33902</contig_pos>
        <strand></strand>
        <context>GGTACTGGAG[T/C]ATTTTTCGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCGAGCTAAAATGCTCATGTTCAATACTGTAGCTGTCGGAGGTACTGGAG</left_flank>
        <right_flank>ATTTTTCGCTGTTATTGGATTCATCCCAGCTGAGAACAAGTACTGGTCGG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAACTGCTACCAACTCCGTGACAGGTGTCATCTGCGAAAGCTCACTCGGATGGAAATGGTCGTATTACCTTCACGCCGCCGTCGGATTGTTCCTCTTCTGCCTTTGGTACATCGTATATATCGATCATCCACAGGACACCAAACGAGTCTCCTGCAAAGAATTGAGCAAAATCGAAAAGTCCAAATCTGCAGCCCATCTTGATAAGAGTACCGATGTTCCATATGGCAAACTTCTAACCAGCCCAGTCATCTGGTGTGTCTGGCTCAACGCCTTCTTCGAAATGTCAGCTGTGATTGTGTGCTCTACCTACATGCCAATCTATTTCCACGAAGTTCTCGGATTTGGAGTCACTGAAACCGGATTCTGGGTTGCTTTGGTTCTCTTCATCTGGCTTCCTGTCCGATGGGTATCTGCTGTCATGAGTGACAAAATGACTTGCGTCGGAGAGCGAGCTAAAATGCTCATGTTCAATACTGTAGCTGTCGGAGGTACTGGAGTATTTTTCGCTGTTATTGGATTCATCCCAGCTGAGAACAAGTACTGGTCGGTGGCTGCGTTCACTATGACCATGTGCTGTGTTGGTGTCAATTCTGGAGGTTTCTACAAGTGTGGTGTTCTTCATGCCCGGTAAGTATCTAGGTTGTGAATCTAAGCAGGGATCGCTTTCTGAGATTTTTCGAAACTTCTTTAGGCCATTTTTTATTTCTCTTATTCCAGTCAATACGCCCACGTCGTCATCGCTGCTATCCAATGGACCAAATGCGTGGCTCTTTTCTCGGCTCCAGCCATGGTTGCCCTCTTCGTCACCACCGAATCAGTCCGCACCCAATGGATCGGTGTCTATCTGGTTTTCGGAGGACTCATGCAAATTACAAATCTCCTTTCCTACTGTATCTTCACCGACAAACCAGCTTCGTGGACCAACAGCGATGAGAAGCCAGTGGCTGTGTCCAAAGCCTAAAAAACAAATTTGAAATGCTTTAATTTCATTGTCCAGA</canonical>
            <polymorphic>TCAACTGCTACCAACTCCGTGACAGGTGTCATCTGCGAAAGCTCACTCGGATGGAAATGGTCGTATTACCTTCACGCCGCCGTCGGATTGTTCCTCTTCTGCCTTTGGTACATCGTATATATCGATCATCCACAGGACACCAAACGAGTCTCCTGCAAAGAATTGAGCAAAATCGAAAAGTCCAAATCTGCAGCCCATCTTGATAAGAGTACCGATGTTCCATATGGCAAACTTCTAACCAGCCCAGTCATCTGGTGTGTCTGGCTCAACGCCTTCTTCGAAATGTCAGCTGTGATTGTGTGCTCTACCTACATGCCAATCTATTTCCACGAAGTTCTCGGATTTGGAGTCACTGAAACCGGATTCTGGGTTGCTTTGGTTCTCTTCATCTGGCTTCCTGTCCGATGGGTATCTGCTGTCATGAGTGACAAAATGACTTGCGTCGGAGAGCGAGCTAAAATGCTCATGTTCAATACTGTAGCTGTCGGAGGTACTGGAGYATTTTTCGCTGTTATTGGATTCATCCCAGCTGAGAACAAGTACTGGTCGGTGGCTGCGTTCACTATGACCATGTGCTGTGTTGGTGTCAATTCTGGAGGTTTCTACAAGTGTGGTGTTCTTCATGCCCGGTAAGTATCTAGGTTGTGAATCTAAGCAGGGATCGCTTTCTGAGATTTTTCGAAACTTCTTTAGGCCATTTTTTATTTCTCTTATTCCAGTCAATACGCCCACGTCGTCATCGCTGCTATCCAATGGACCAAATGCGTGGCTCTTTTCTCGGCTCCAGCCATGGTTGCCCTCTTCGTCACCACCGAATCAGTCCGCACCCAATGGATCGGTGTCTATCTGGTTTTCGGAGGACTCATGCAAATTACAAATCTCCTTTCCTACTGTATCTTCACCGACAAACCAGCTTCGTGGACCAACAGCGATGAGAAGCCAGTGGCTGTGTCCAAAGCCTAAAAAACAAATTTGAAATGCTTTAATTTCATTGTCCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGCTTTGGTTCTCTTCATC</pcr_primer_p1>
		<pcr_primer_p2>AAGAACACCACACTTGTAGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTGCTTTGGTTCTCTTCATCTGGCTTCCTGTCCGATGGGTATCTGCTGTCATGAGTGACAAAATGACTTGCGTCGGAGAGCGAGCTAAAATGCTCATGTTCAATACTGTAGCTGTCGGAGGTACTGGAGTATTTTTCGCTGTTATTGGATTCATCCCAGCTGAGAACAAGTACTGGTCGGTGGCTGCGTTCACTATGACCATGTGCTGTGTTGGTGTCAATTCTGGAGGTTTCTACAAGTGTGGTGTTCTT</canonical_amplicon>
		<polymorphic_amplicon>TTGCTTTGGTTCTCTTCATCTGGCTTCCTGTCCGATGGGTATCTGCTGTCATGAGTGACAAAATGACTTGCGTCGGAGAGCGAGCTAAAATGCTCATGTTCAATACTGTAGCTGTCGGAGGTACTGGAGYATTTTTCGCTGTTATTGGATTCATCCCAGCTGAGAACAAGTACTGGTCGGTGGCTGCGTTCACTATGACCATGTGCTGTGTTGGTGTCAATTCTGGAGGTTTCTACAAGTGTGGTGTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17723</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>37829</contig_pos>
        <strand>+</strand>
        <context>AGATTTGCAA[C/T]CGTTTTGGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAAAAAATGAAAATTTTAACCTCTAAACGTAGGTAAGAAAGATTTGCAA</left_flank>
        <right_flank>CGTTTTGGCAGCTTTTCAGTTCTAGAACTTCCAAAGTACATGATTACAGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTTTAAAAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGATTGTTAGTGATAGCTGTTGGATTTTTATGCTTGGCATCTGTCTGTTCCAATTATATTGTCATTAATTTCACCTTCATCTGCATGAAAAATGACTATACCGAGAGTTATCTGGACAAAAATGGGGTAGGTTTTGAGATATAGGATATTGGACGGTTTTTAAAAATTGAATTGGACAAAAAATGAAAATTTTAACCTCTAAACGTAGGTAAGAAAGATTTGCAACCGTTTTGGCAGCTTTTCAGTTCTAGAACTTCCAAAGTACATGATTACAGTACTAAATCAGAGATGAACGAAATCCTTTTCATATCAGAACTTGCCTACGTGATTTTTCTCTATCAAAAATCTCGATATTTATAGACAATTCGAAGTGTTTATGACTACACCAGCGGAGAGAAAAAATGGATTATGTGGGCGGTGGCGGCTGGAACAATTATCGGAACGATTCCGATTAATTTGTTGTATGTTAAATACGGAGCAAGGTGAGACATTTGAAAATAGTCAACTTTGAAGTCCTCCAGAATCTTTGAATTTGTCTGAAAATTCCAGGGTGCACTAAACAAAAACTTTGTTTTTGTAATGGGAAACTTTTTTGAAATTTATAATCTGAAACTTACAGATCTTCTCAGGACTTCAAAGCTGACTAACCGCCCATGAAAAAGTTAAAAGATGATTTTTTTCATATTTGAAAAATTCAGGCCCTGCCCCGGCGGAATCATGGTTTTC</canonical>
            <polymorphic>AGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTTTAAAAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGATTGTTAGTGATAGCTGTTGGATTTTTATGCTTGGCATCTGTCTGTTCCAATTATATTGTCATTAATTTCACCTTCATCTGCATGAAAAATGACTATACCGAGAGTTATCTGGACAAAAATGGGGTAGGTTTTGAGATATAGGATATTGGACGGTTTTTAAAAATTGAATTGGACAAAAAATGAAAATTTTAACCTCTAAACGTAGGTAAGAAAGATTTGCAAYCGTTTTGGCAGCTTTTCAGTTCTAGAACTTCCAAAGTACATGATTACAGTACTAAATCAGAGATGAACGAAATCCTTTTCATATCAGAACTTGCCTACGTGATTTTTCTCTATCAAAAATCTCGATATTTATAGACAATTCGAAGTGTTTATGACTACACCAGCGGAGAGAAAAAATGGATTATGTGGGCGGTGGCGGCTGGAACAATTATCGGAACGATTCCGATTAATTTGTTGTATGTTAAATACGGAGCAAGGTGAGACATTTGAAAATAGTCAACTTTGAAGTCCTCCAGAATCTTTGAATTTGTCTGAAAATTCCAGGGTGCACTAAACAAAAACTTTGTTTTTGTAATGGGAAACTTTTTTGAAATTTATAATCTGAAACTTACAGATCTTCTCAGGACTTCAAAGCTGACTAACCGCCCATGAAAAAGTTAAAAGATGATTTTTTTCATATTTGAAAAATTCAGGCCCTGCCCCGGCGGAATCATGGTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>452 429 72 47</canonical_bands>
                <polymorphic_bands>452 429 119</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATACCGAGAGTTATCTGGACA</pcr_primer_p1>
		<pcr_primer_p2>TTGATAGAGAAAAATCACGTAGG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTATACCGAGAGTTATCTGGACAAAAATGGGGTAGGTTTTGAGATATAGGATATTGGACGGTTTTTAAAAATTGAATTGGACAAAAAATGAAAATTTTAACCTCTAAACGTAGGTAAGAAAGATTTGCAACCGTTTTGGCAGCTTTTCAGTTCTAGAACTTCCAAAGTACATGATTACAGTACTAAATCAGAGATGAACGAAATCCTTTTCATATCAGAACTTGCCTACGTGATTTTTCTCTATCAA</canonical_amplicon>
		<polymorphic_amplicon>CTATACCGAGAGTTATCTGGACAAAAATGGGGTAGGTTTTGAGATATAGGATATTGGACGGTTTTTAAAAATTGAATTGGACAAAAAATGAAAATTTTAACCTCTAAACGTAGGTAAGAAAGATTTGCAAYCGTTTTGGCAGCTTTTCAGTTCTAGAACTTCCAAAGTACATGATTACAGTACTAAATCAGAGATGAACGAAATCCTTTTCATATCAGAACTTGCCTACGTGATTTTTCTCTATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17724</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>37610</contig_pos>
        <strand>+</strand>
        <context>TTTCAGATTG[A/T]TAGTGATAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGATTG</left_flank>
        <right_flank>TAGTGATAGCTGTTGGATTTTTATGCTTGGCATCTGTCTGTTCCAATTAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGAAATTTAAACTTTTTCCGTTTACTGAATATTTTGAAAACCACGACTGGATATCCTTGAAATTTCTAAATTTTTAAATTTCGGAAATCCGCTTTTTTGAATTCCTGGATTTCAGAATTCCTGTTTTTCTGGATTTTTGAATTTCTGAATTCTCGAAACTTCTAGATTTTTCAAATCATTGATTATACAAGAATTATCAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTTTAAAAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGATTGTTAGTGATAGCTGTTGGATTTTTATGCTTGGCATCTGTCTGTTCCAATTATATTGTCATTAATTTCACCTTCATCTGCATGAAAAATGACTATACCGAGAGTTATCTGGACAAAAATGGGGTAGGTTTTGAGATATAGGATATTGGACGGTTTTTAAAAATTGAATTGGACAAAAAATGAAAATTTTAACCTCTAAACGTAGGTAAGAAAGATTTGCAACCGTTTTGGCAGCTTTTCAGTTCTAGAACTTCCAAAGTACATGATTACAGTACTAAATCAGAGATGAACGAAATCCTTTTCATATCAGAACTTGCCTACGTGATTTTTCTCTATCAAAAATCTCGATATTTATAGACAATTCGAAGTGTTTATGACTACACCAGCGGAGAGAAAAAATGGATTATGTGGGCGGTGGCGGCTGGAACAATTATCGGAACGATTCCGATTAATTTGTTGTATGTTAAATACGGAGCAAGGTGAGACATTTGAAAATAGTCAACT</canonical>
            <polymorphic>ACTGAAATTTAAACTTTTTCCGTTTACTGAATATTTTGAAAACCACGACTGGATATCCTTGAAATTTCTAAATTTTTAAATTTCGGAAATCCGCTTTTTTGAATTCCTGGATTTCAGAATTCCTGTTTTTCTGGATTTTTGAATTTCTGAATTCTCGAAACTTCTAGATTTTTCAAATCATTGATTATACAAGAATTATCAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTTTAAAAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGATTGWTAGTGATAGCTGTTGGATTTTTATGCTTGGCATCTGTCTGTTCCAATTATATTGTCATTAATTTCACCTTCATCTGCATGAAAAATGACTATACCGAGAGTTATCTGGACAAAAATGGGGTAGGTTTTGAGATATAGGATATTGGACGGTTTTTAAAAATTGAATTGGACAAAAAATGAAAATTTTAACCTCTAAACGTAGGTAAGAAAGATTTGCAACCGTTTTGGCAGCTTTTCAGTTCTAGAACTTCCAAAGTACATGATTACAGTACTAAATCAGAGATGAACGAAATCCTTTTCATATCAGAACTTGCCTACGTGATTTTTCTCTATCAAAAATCTCGATATTTATAGACAATTCGAAGTGTTTATGACTACACCAGCGGAGAGAAAAAATGGATTATGTGGGCGGTGGCGGCTGGAACAATTATCGGAACGATTCCGATTAATTTGTTGTATGTTAAATACGGAGCAAGGTGAGACATTTGAAAATAGTCAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAATAAATCCTCGAATACTTG</pcr_primer_p1>
		<pcr_primer_p2>AAAACCGTCCAATATCCTATATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTTTAAAAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGATTGTTAGTGATAGCTGTTGGATTTTTATGCTTGGCATCTGTCTGTTCCAATTATATTGTCATTAATTTCACCTTCATCTGCATGAAAAATGACTATACCGAGAGTTATCTGGACAAAAATGGGGTAGGTTTTGAGATATAGGATATTGGACGGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTTTAAAAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGATTGWTAGTGATAGCTGTTGGATTTTTATGCTTGGCATCTGTCTGTTCCAATTATATTGTCATTAATTTCACCTTCATCTGCATGAAAAATGACTATACCGAGAGTTATCTGGACAAAAATGGGGTAGGTTTTGAGATATAGGATATTGGACGGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17725</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>49273</contig_pos>
        <strand></strand>
        <context>TTTTTTATTC[C/T]AGATTAATAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAGCCGTAAAAATTCGAAAATTGAACTTCCTGAAACATTTTTTTATTC</left_flank>
        <right_flank>AGATTAATAAGTGAAATGCTGAAAATCCACATTTTCAACACAGTCTCTGT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTGCGATTCTGAGATTCTGCGATTCAGCAAATCTGCGATTCTGAGATTCTCAGATTCGGGAATTCGGAGGTTCTGAGATTCTAAGATTCTGAGATTCTGAACTTTGGAAATGCGGAATTCCGGAAATTTTTACCGATTCGTTTACCAAATCGGATATTCGGAATTCTAATTTCTCATAATTTTTCCAGAAACTTCTAATCAGTCCTGTAATCCTTTGTGTCTGGTTAAATGCATTTTTCGATTTAACAGCTGCAATTATGTTCTCCACTTATGTACCAATTTATTTACACGAAGTCCTGAAATTCGAAATAAAGACCACCGGATTTTTATCATCTTTAATTCTGGGAATGTCCATTCCAGTTCGGATATTTTTTGCAATTATCAGTGATAAGGTTAAGTGAGTTTTTTTTACTTCGAAAAATTAAAATTTTAAAAATTCAAAAAAATTAAAGCCGTAAAAATTCGAAAATTGAACTTCCTGAAACATTTTTTTATTCCAGATTAATAAGTGAAATGCTGAAAATCCACATTTTCAACACAGTCTCTGTTGGAGTCTCGGGAATATTTTTCACGTCTATTGGGTAATTTTTTTTTTTTCAATTCGAATTTTTTTCTGAATTTTTTCTGAAATTTCAGATTCATACCAATTGAGTACAGTGGATGGTCGGTTTTCTGTTTTGTCATGTGTATGTGTTGTATTGGAGTGAATTCTGGTGGATTTTATAAATCTGCATATTATCATTCGAGGTGAGAATCTCGAAATTCAGAAATTCAAAAATTCGGAATTGTTTTCTTGATTTTCAGAATTTTGGAATTTCATAAATCCAGAAATTCTGAAATTTAGAAAATTTAAAAGAAAAGAAGCCTCCAGGAATTTTCAAAATAACAATATCATTATTTTCTCAATTTCGCCGAATTTTGAAATTTTCTTAAAATGTATATCTGAAAAAACTACTAGGCATTCTGAAACTTTGAAATCTGAAAAATCTGAAAATCCT</canonical>
            <polymorphic>TCCTGCGATTCTGAGATTCTGCGATTCAGCAAATCTGCGATTCTGAGATTCTCAGATTCGGGAATTCGGAGGTTCTGAGATTCTAAGATTCTGAGATTCTGAACTTTGGAAATGCGGAATTCCGGAAATTTTTACCGATTCGTTTACCAAATCGGATATTCGGAATTCTAATTTCTCATAATTTTTCCAGAAACTTCTAATCAGTCCTGTAATCCTTTGTGTCTGGTTAAATGCATTTTTCGATTTAACAGCTGCAATTATGTTCTCCACTTATGTACCAATTTATTTACACGAAGTCCTGAAATTCGAAATAAAGACCACCGGATTTTTATCATCTTTAATTCTGGGAATGTCCATTCCAGTTCGGATATTTTTTGCAATTATCAGTGATAAGGTTAAGTGAGTTTTTTTTACTTCGAAAAATTAAAATTTTAAAAATTCAAAAAAATTAAAGCCGTAAAAATTCGAAAATTGAACTTCCTGAAACATTTTTTTATTCYAGATTAATAAGTGAAATGCTGAAAATCCACATTTTCAACACAGTCTCTGTTGGAGTCTCGGGAATATTTTTCACGTCTATTGGGTAATTTTTTTTTTTTCAATTCGAATTTTTTTCTGAATTTTTTCTGAAATTTCAGATTCATACCAATTGAGTACAGTGGATGGTCGGTTTTCTGTTTTGTCATGTGTATGTGTTGTATTGGAGTGAATTCTGGTGGATTTTATAAATCTGCATATTATCATTCGAGGTGAGAATCTCGAAATTCAGAAATTCAAAAATTCGGAATTGTTTTCTTGATTTTCAGAATTTTGGAATTTCATAAATCCAGAAATTCTGAAATTTAGAAAATTTAAAAGAAAAGAAGCCTCCAGGAATTTTCAAAATAACAATATCATTATTTTCTCAATTTCGCCGAATTTTGAAATTTTCTTAAAATGTATATCTGAAAAAACTACTAGGCATTCTGAAACTTTGAAATCTGAAAAATCTGAAAATCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTGATAAGGTTAAGTGAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTCAATTGGTATGAATCTGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>270</pcr_amplicon_size>
		<canonical_amplicon>CAGTGATAAGGTTAAGTGAGTTTTTTTTACTTCGAAAAATTAAAATTTTAAAAATTCAAAAAAATTAAAGCCGTAAAAATTCGAAAATTGAACTTCCTGAAACATTTTTTTATTCCAGATTAATAAGTGAAATGCTGAAAATCCACATTTTCAACACAGTCTCTGTTGGAGTCTCGGGAATATTTTTCACGTCTATTGGGTAATTTTTTTTTTTTCAATTCGAATTTTTTTCTGAATTTTTTCTGAAATTTCAGATTCATACCAATTGAG</canonical_amplicon>
		<polymorphic_amplicon>CAGTGATAAGGTTAAGTGAGTTTTTTTTACTTCGAAAAATTAAAATTTTAAAAATTCAAAAAAATTAAAGCCGTAAAAATTCGAAAATTGAACTTCCTGAAACATTTTTTTATTCYAGATTAATAAGTGAAATGCTGAAAATCCACATTTTCAACACAGTCTCTGTTGGAGTCTCGGGAATATTTTTCACGTCTATTGGGTAATTTTTTTTTTTTCAATTCGAATTTTTTTCTGAATTTTTTCTGAAATTTCAGATTCATACCAATTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17726</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>49337</contig_pos>
        <strand></strand>
        <context>AGTCTCGGGA[A/G]TATTTTTCRC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATGCTGAAAATCCACATTTTCAACACAGTCTCTGTTGGAGTCTCGGGA</left_flank>
        <right_flank>TATTTTTCACGTCTATTGGGTAATTTTTTTTTTTTCAATTCGAATTTTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGGAGGTTCTGAGATTCTAAGATTCTGAGATTCTGAACTTTGGAAATGCGGAATTCCGGAAATTTTTACCGATTCGTTTACCAAATCGGATATTCGGAATTCTAATTTCTCATAATTTTTCCAGAAACTTCTAATCAGTCCTGTAATCCTTTGTGTCTGGTTAAATGCATTTTTCGATTTAACAGCTGCAATTATGTTCTCCACTTATGTACCAATTTATTTACACGAAGTCCTGAAATTCGAAATAAAGACCACCGGATTTTTATCATCTTTAATTCTGGGAATGTCCATTCCAGTTCGGATATTTTTTGCAATTATCAGTGATAAGGTTAAGTGAGTTTTTTTTACTTCGAAAAATTAAAATTTTAAAAATTCAAAAAAATTAAAGCCGTAAAAATTCGAAAATTGAACTTCCTGAAACATTTTTTTATTCCAGATTAATAAGTGAAATGCTGAAAATCCACATTTTCAACACAGTCTCTGTTGGAGTCTCGGGAATATTTTTCACGTCTATTGGGTAATTTTTTTTTTTTCAATTCGAATTTTTTTCTGAATTTTTTCTGAAATTTCAGATTCATACCAATTGAGTACAGTGGATGGTCGGTTTTCTGTTTTGTCATGTGTATGTGTTGTATTGGAGTGAATTCTGGTGGATTTTATAAATCTGCATATTATCATTCGAGGTGAGAATCTCGAAATTCAGAAATTCAAAAATTCGGAATTGTTTTCTTGATTTTCAGAATTTTGGAATTTCATAAATCCAGAAATTCTGAAATTTAGAAAATTTAAAAGAAAAGAAGCCTCCAGGAATTTTCAAAATAACAATATCATTATTTTCTCAATTTCGCCGAATTTTGAAATTTTCTTAAAATGTATATCTGAAAAAACTACTAGGCATTCTGAAACTTTGAAATCTGAAAAATCTGAAAATCCTAATTTTGCGCAACTCAAATTTTGAAAATTTGCCAATAAAAAAAATTTTCAGACAATTCAACCCA</canonical>
            <polymorphic>TTCGGAGGTTCTGAGATTCTAAGATTCTGAGATTCTGAACTTTGGAAATGCGGAATTCCGGAAATTTTTACCGATTCGTTTACCAAATCGGATATTCGGAATTCTAATTTCTCATAATTTTTCCAGAAACTTCTAATCAGTCCTGTAATCCTTTGTGTCTGGTTAAATGCATTTTTCGATTTAACAGCTGCAATTATGTTCTCCACTTATGTACCAATTTATTTACACGAAGTCCTGAAATTCGAAATAAAGACCACCGGATTTTTATCATCTTTAATTCTGGGAATGTCCATTCCAGTTCGGATATTTTTTGCAATTATCAGTGATAAGGTTAAGTGAGTTTTTTTTACTTCGAAAAATTAAAATTTTAAAAATTCAAAAAAATTAAAGCCGTAAAAATTCGAAAATTGAACTTCCTGAAACATTTTTTTATTCCAGATTAATAAGTGAAATGCTGAAAATCCACATTTTCAACACAGTCTCTGTTGGAGTCTCGGGARTATTTTTCACGTCTATTGGGTAATTTTTTTTTTTTCAATTCGAATTTTTTTCTGAATTTTTTCTGAAATTTCAGATTCATACCAATTGAGTACAGTGGATGGTCGGTTTTCTGTTTTGTCATGTGTATGTGTTGTATTGGAGTGAATTCTGGTGGATTTTATAAATCTGCATATTATCATTCGAGGTGAGAATCTCGAAATTCAGAAATTCAAAAATTCGGAATTGTTTTCTTGATTTTCAGAATTTTGGAATTTCATAAATCCAGAAATTCTGAAATTTAGAAAATTTAAAAGAAAAGAAGCCTCCAGGAATTTTCAAAATAACAATATCATTATTTTCTCAATTTCGCCGAATTTTGAAATTTTCTTAAAATGTATATCTGAAAAAACTACTAGGCATTCTGAAACTTTGAAATCTGAAAAATCTGAAAATCCTAATTTTGCGCAACTCAAATTTTGAAAATTTGCCAATAAAAAAAATTTTCAGACAATTCAACCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTGAACTTCCTGAAACATT</pcr_primer_p1>
		<pcr_primer_p2>GAATTCACTCCAATACAACACAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAATTGAACTTCCTGAAACATTTTTTTATTCCAGATTAATAAGTGAAATGCTGAAAATCCACATTTTCAACACAGTCTCTGTTGGAGTCTCGGGAATATTTTTCACGTCTATTGGGTAATTTTTTTTTTTTCAATTCGAATTTTTTTCTGAATTTTTTCTGAAATTTCAGATTCATACCAATTGAGTACAGTGGATGGTCGGTTTTCTGTTTTGTCATGTGTATGTGTTGTATTGGAGTGAATTC</canonical_amplicon>
		<polymorphic_amplicon>AAAATTGAACTTCCTGAAACATTTTTTTATTCCAGATTAATAAGTGAAATGCTGAAAATCCACATTTTCAACACAGTCTCTGTTGGAGTCTCGGGARTATTTTTCACGTCTATTGGGTAATTTTTTTTTTTTCAATTCGAATTTTTTTCTGAATTTTTTCTGAAATTTCAGATTCATACCAATTGAGTACAGTGGATGGTCGGTTTTCTGTTTTGTCATGTGTATGTGTTGTATTGGAGTGAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17727</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>49346</contig_pos>
        <strand></strand>
        <context>ARTATTTTTC[A/G]CGTCTATTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATCCACATTTTCAACACAGTCTCTGTTGGAGTCTCGGGAATATTTTTC</left_flank>
        <right_flank>CGTCTATTGGGTAATTTTTTTTTTTTCAATTCGAATTTTTTTCTGAATTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGAGATTCTAAGATTCTGAGATTCTGAACTTTGGAAATGCGGAATTCCGGAAATTTTTACCGATTCGTTTACCAAATCGGATATTCGGAATTCTAATTTCTCATAATTTTTCCAGAAACTTCTAATCAGTCCTGTAATCCTTTGTGTCTGGTTAAATGCATTTTTCGATTTAACAGCTGCAATTATGTTCTCCACTTATGTACCAATTTATTTACACGAAGTCCTGAAATTCGAAATAAAGACCACCGGATTTTTATCATCTTTAATTCTGGGAATGTCCATTCCAGTTCGGATATTTTTTGCAATTATCAGTGATAAGGTTAAGTGAGTTTTTTTTACTTCGAAAAATTAAAATTTTAAAAATTCAAAAAAATTAAAGCCGTAAAAATTCGAAAATTGAACTTCCTGAAACATTTTTTTATTCCAGATTAATAAGTGAAATGCTGAAAATCCACATTTTCAACACAGTCTCTGTTGGAGTCTCGGGAATATTTTTCACGTCTATTGGGTAATTTTTTTTTTTTCAATTCGAATTTTTTTCTGAATTTTTTCTGAAATTTCAGATTCATACCAATTGAGTACAGTGGATGGTCGGTTTTCTGTTTTGTCATGTGTATGTGTTGTATTGGAGTGAATTCTGGTGGATTTTATAAATCTGCATATTATCATTCGAGGTGAGAATCTCGAAATTCAGAAATTCAAAAATTCGGAATTGTTTTCTTGATTTTCAGAATTTTGGAATTTCATAAATCCAGAAATTCTGAAATTTAGAAAATTTAAAAGAAAAGAAGCCTCCAGGAATTTTCAAAATAACAATATCATTATTTTCTCAATTTCGCCGAATTTTGAAATTTTCTTAAAATGTATATCTGAAAAAACTACTAGGCATTCTGAAACTTTGAAATCTGAAAAATCTGAAAATCCTAATTTTGCGCAACTCAAATTTTGAAAATTTGCCAATAAAAAAAATTTTCAGACAATTCAACCCAATTGTGATT</canonical>
            <polymorphic>TCTGAGATTCTAAGATTCTGAGATTCTGAACTTTGGAAATGCGGAATTCCGGAAATTTTTACCGATTCGTTTACCAAATCGGATATTCGGAATTCTAATTTCTCATAATTTTTCCAGAAACTTCTAATCAGTCCTGTAATCCTTTGTGTCTGGTTAAATGCATTTTTCGATTTAACAGCTGCAATTATGTTCTCCACTTATGTACCAATTTATTTACACGAAGTCCTGAAATTCGAAATAAAGACCACCGGATTTTTATCATCTTTAATTCTGGGAATGTCCATTCCAGTTCGGATATTTTTTGCAATTATCAGTGATAAGGTTAAGTGAGTTTTTTTTACTTCGAAAAATTAAAATTTTAAAAATTCAAAAAAATTAAAGCCGTAAAAATTCGAAAATTGAACTTCCTGAAACATTTTTTTATTCCAGATTAATAAGTGAAATGCTGAAAATCCACATTTTCAACACAGTCTCTGTTGGAGTCTCGGGAATATTTTTCRCGTCTATTGGGTAATTTTTTTTTTTTCAATTCGAATTTTTTTCTGAATTTTTTCTGAAATTTCAGATTCATACCAATTGAGTACAGTGGATGGTCGGTTTTCTGTTTTGTCATGTGTATGTGTTGTATTGGAGTGAATTCTGGTGGATTTTATAAATCTGCATATTATCATTCGAGGTGAGAATCTCGAAATTCAGAAATTCAAAAATTCGGAATTGTTTTCTTGATTTTCAGAATTTTGGAATTTCATAAATCCAGAAATTCTGAAATTTAGAAAATTTAAAAGAAAAGAAGCCTCCAGGAATTTTCAAAATAACAATATCATTATTTTCTCAATTTCGCCGAATTTTGAAATTTTCTTAAAATGTATATCTGAAAAAACTACTAGGCATTCTGAAACTTTGAAATCTGAAAAATCTGAAAATCCTAATTTTGCGCAACTCAAATTTTGAAAATTTGCCAATAAAAAAAATTTTCAGACAATTCAACCCAATTGTGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>318 148 111 88 69 48 34 33 29 28 22 16 13 13 11 10 6 3</canonical_bands>
                <polymorphic_bands>318 148 121 111 69 48 34 29 28 22 16 13 13 11 10 6 3</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTGAACTTCCTGAAACATT</pcr_primer_p1>
		<pcr_primer_p2>GAATTCACTCCAATACAACACAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAATTGAACTTCCTGAAACATTTTTTTATTCCAGATTAATAAGTGAAATGCTGAAAATCCACATTTTCAACACAGTCTCTGTTGGAGTCTCGGGAATATTTTTCACGTCTATTGGGTAATTTTTTTTTTTTCAATTCGAATTTTTTTCTGAATTTTTTCTGAAATTTCAGATTCATACCAATTGAGTACAGTGGATGGTCGGTTTTCTGTTTTGTCATGTGTATGTGTTGTATTGGAGTGAATTC</canonical_amplicon>
		<polymorphic_amplicon>AAAATTGAACTTCCTGAAACATTTTTTTATTCCAGATTAATAAGTGAAATGCTGAAAATCCACATTTTCAACACAGTCTCTGTTGGAGTCTCGGGAATATTTTTCRCGTCTATTGGGTAATTTTTTTTTTTTCAATTCGAATTTTTTTCTGAATTTTTTCTGAAATTTCAGATTCATACCAATTGAGTACAGTGGATGGTCGGTTTTCTGTTTTGTCATGTGTATGTGTTGTATTGGAGTGAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17728</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>49394</contig_pos>
        <strand></strand>
        <context>TTTTTCTGAA[T/G]TTTTTCTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TCACGTCTATTGGGTAATTTTTTTTTTTTCAATTCGAATTTTTTTCTGAA</left_flank>
        <right_flank>TTTTTCTGAAATTTCAGATTCATACCAATTGAGTACAGTGGATGGTCGGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGGAAATTTTTACCGATTCGTTTACCAAATCGGATATTCGGAATTCTAATTTCTCATAATTTTTCCAGAAACTTCTAATCAGTCCTGTAATCCTTTGTGTCTGGTTAAATGCATTTTTCGATTTAACAGCTGCAATTATGTTCTCCACTTATGTACCAATTTATTTACACGAAGTCCTGAAATTCGAAATAAAGACCACCGGATTTTTATCATCTTTAATTCTGGGAATGTCCATTCCAGTTCGGATATTTTTTGCAATTATCAGTGATAAGGTTAAGTGAGTTTTTTTTACTTCGAAAAATTAAAATTTTAAAAATTCAAAAAAATTAAAGCCGTAAAAATTCGAAAATTGAACTTCCTGAAACATTTTTTTATTCCAGATTAATAAGTGAAATGCTGAAAATCCACATTTTCAACACAGTCTCTGTTGGAGTCTCGGGAATATTTTTCACGTCTATTGGGTAATTTTTTTTTTTTCAATTCGAATTTTTTTCTGAATTTTTTCTGAAATTTCAGATTCATACCAATTGAGTACAGTGGATGGTCGGTTTTCTGTTTTGTCATGTGTATGTGTTGTATTGGAGTGAATTCTGGTGGATTTTATAAATCTGCATATTATCATTCGAGGTGAGAATCTCGAAATTCAGAAATTCAAAAATTCGGAATTGTTTTCTTGATTTTCAGAATTTTGGAATTTCATAAATCCAGAAATTCTGAAATTTAGAAAATTTAAAAGAAAAGAAGCCTCCAGGAATTTTCAAAATAACAATATCATTATTTTCTCAATTTCGCCGAATTTTGAAATTTTCTTAAAATGTATATCTGAAAAAACTACTAGGCATTCTGAAACTTTGAAATCTGAAAAATCTGAAAATCCTAATTTTGCGCAACTCAAATTTTGAAAATTTGCCAATAAAAAAAATTTTCAGACAATTCAACCCAATTGTGATTACTGCGATTCAGTGGATAAAATGTTTGGCATTATTCGTTGCTCCGGCT</canonical>
            <polymorphic>CCGGAAATTTTTACCGATTCGTTTACCAAATCGGATATTCGGAATTCTAATTTCTCATAATTTTTCCAGAAACTTCTAATCAGTCCTGTAATCCTTTGTGTCTGGTTAAATGCATTTTTCGATTTAACAGCTGCAATTATGTTCTCCACTTATGTACCAATTTATTTACACGAAGTCCTGAAATTCGAAATAAAGACCACCGGATTTTTATCATCTTTAATTCTGGGAATGTCCATTCCAGTTCGGATATTTTTTGCAATTATCAGTGATAAGGTTAAGTGAGTTTTTTTTACTTCGAAAAATTAAAATTTTAAAAATTCAAAAAAATTAAAGCCGTAAAAATTCGAAAATTGAACTTCCTGAAACATTTTTTTATTCCAGATTAATAAGTGAAATGCTGAAAATCCACATTTTCAACACAGTCTCTGTTGGAGTCTCGGGAATATTTTTCACGTCTATTGGGTAATTTTTTTTTTTTCAATTCGAATTTTTTTCTGAAKTTTTTCTGAAATTTCAGATTCATACCAATTGAGTACAGTGGATGGTCGGTTTTCTGTTTTGTCATGTGTATGTGTTGTATTGGAGTGAATTCTGGTGGATTTTATAAATCTGCATATTATCATTCGAGGTGAGAATCTCGAAATTCAGAAATTCAAAAATTCGGAATTGTTTTCTTGATTTTCAGAATTTTGGAATTTCATAAATCCAGAAATTCTGAAATTTAGAAAATTTAAAAGAAAAGAAGCCTCCAGGAATTTTCAAAATAACAATATCATTATTTTCTCAATTTCGCCGAATTTTGAAATTTTCTTAAAATGTATATCTGAAAAAACTACTAGGCATTCTGAAACTTTGAAATCTGAAAAATCTGAAAATCCTAATTTTGCGCAACTCAAATTTTGAAAATTTGCCAATAAAAAAAATTTTCAGACAATTCAACCCAATTGTGATTACTGCGATTCAGTGGATAAAATGTTTGGCATTATTCGTTGCTCCGGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>145 139 125 92 79 78 54 42 37 28 26 25 17 17 12 12 9 9 9 8 8 8 8 8 5</canonical_bands>
                <polymorphic_bands>145 139 125 92 79 78 54 42 37 28 26 25 24 17 17 9 9 9 8 8 8 8 8 5</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>116 76 76 61 58 54 43 39 37 37 32 26 24 23 21 17 17 17 16 15 15 12 12 11 10 10 10 10 9 9 9 8 8 8 8 8 8 7 6 6 6 5</canonical_bands>
                <polymorphic_bands>116 76 76 61 58 54 43 39 37 37 32 26 24 24 23 21 17 17 17 16 15 15 11 10 10 10 10 9 9 9 8 8 8 8 8 8 7 6 6 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTGAACTTCCTGAAACATT</pcr_primer_p1>
		<pcr_primer_p2>GAATTCACTCCAATACAACACAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAATTGAACTTCCTGAAACATTTTTTTATTCCAGATTAATAAGTGAAATGCTGAAAATCCACATTTTCAACACAGTCTCTGTTGGAGTCTCGGGAATATTTTTCACGTCTATTGGGTAATTTTTTTTTTTTCAATTCGAATTTTTTTCTGAATTTTTTCTGAAATTTCAGATTCATACCAATTGAGTACAGTGGATGGTCGGTTTTCTGTTTTGTCATGTGTATGTGTTGTATTGGAGTGAATTC</canonical_amplicon>
		<polymorphic_amplicon>AAAATTGAACTTCCTGAAACATTTTTTTATTCCAGATTAATAAGTGAAATGCTGAAAATCCACATTTTCAACACAGTCTCTGTTGGAGTCTCGGGAATATTTTTCACGTCTATTGGGTAATTTTTTTTTTTTCAATTCGAATTTTTTTCTGAAKTTTTTCTGAAATTTCAGATTCATACCAATTGAGTACAGTGGATGGTCGGTTTTCTGTTTTGTCATGTGTATGTGTTGTATTGGAGTGAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17729</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>51051</contig_pos>
        <strand>+</strand>
        <context>TACTTTTCTT[C/T]AAACTATTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGTCTGAACTAGTCTCAACAGACTCTTCTTGGTTCCTCATACTTTTCTT</left_flank>
        <right_flank>AAACTATTCCTTCCAAACAACTGATATTTACTTCACTATTGAATTGCTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATAAAGTTAAAATGAAGTATAAAAGTAAAGAAACATATCATTCTTATAATAAATCATTCTTATAATAAATAAATGAAGTTGCGTCTCTTTGTTTCTCTCTCTCTGTCAGTTTGTCCGCCAATTTTGAAAAGCTTGAAAATTAAATATAATTTGACGTGACCTTTTGAGAAAGAGAAGGAGCGAAGCGACGAACAAAATAAATAATGGGTCAACTCGCGCCGAAGGCGCACCAGCCAGCTGTTTGAAGCGCCGGAGGCGCGGCAAACATGCTGGTAAATACAAAGAATTAATCAAAGATACATAGCTAAGGGAAAACAAAGCTTCCTATGAAATTAGAGATTCTGGAATTCAAGAAAGATGAGAACAAAGGAAAGTATGATTCATCTACTGAGATATTGTCAGAGGAGATGACAATGAGTCAGAGAAAAGAAGAAAAGTTTATTTTTACTGTCTGAACTAGTCTCAACAGACTCTTCTTGGTTCCTCATACTTTTCTTCAAACTATTCCTTCCAAACAACTGATATTTACTTCACTATTGAATTGCTACTTATCTCTGGCTTTGCTCAAAGCTCTGAGCATCCTTGATACACCTGCGAGCTGATTATGTGATCTTTTCCCAAGTTTTGGGAACAACTTTTCTGAAGTTTTTGACAGATTATTGATTCTCAGCGATGTGATCATTTTCTTCTTTTCAATCTCGTAATTACAGCACTTTTTCTGTCAACGAGTTTGTATATGAAAATCGTCGTCTAATTATGAAATTTTCAACTTTTCAGAAACATTCATTCCTCGTCAAAAATACCGAAAACTGGGCAAACTTTTCTAATCGTTATTTTGTGTTCGCGAGTTTTTACATTACTGTGTTAATAGGTTTGGGGATTACTGTAACGAGGCTCGCGTTTAAAAAATTGAAAGGTACGGTATCTGCGGATCAAGGGATCTCGAGAAAACTGACAAAAATCGCATTGACCAATGGATTTGTGTACTCTGGAATTAT</canonical>
            <polymorphic>AGATAAAGTTAAAATGAAGTATAAAAGTAAAGAAACATATCATTCTTATAATAAATCATTCTTATAATAAATAAATGAAGTTGCGTCTCTTTGTTTCTCTCTCTCTGTCAGTTTGTCCGCCAATTTTGAAAAGCTTGAAAATTAAATATAATTTGACGTGACCTTTTGAGAAAGAGAAGGAGCGAAGCGACGAACAAAATAAATAATGGGTCAACTCGCGCCGAAGGCGCACCAGCCAGCTGTTTGAAGCGCCGGAGGCGCGGCAAACATGCTGGTAAATACAAAGAATTAATCAAAGATACATAGCTAAGGGAAAACAAAGCTTCCTATGAAATTAGAGATTCTGGAATTCAAGAAAGATGAGAACAAAGGAAAGTATGATTCATCTACTGAGATATTGTCAGAGGAGATGACAATGAGTCAGAGAAAAGAAGAAAAGTTTATTTTTACTGTCTGAACTAGTCTCAACAGACTCTTCTTGGTTCCTCATACTTTTCTTYAAACTATTCCTTCCAAACAACTGATATTTACTTCACTATTGAATTGCTACTTATCTCTGGCTTTGCTCAAAGCTCTGAGCATCCTTGATACACCTGCGAGCTGATTATGTGATCTTTTCCCAAGTTTTGGGAACAACTTTTCTGAAGTTTTTGACAGATTATTGATTCTCAGCGATGTGATCATTTTCTTCTTTTCAATCTCGTAATTACAGCACTTTTTCTGTCAACGAGTTTGTATATGAAAATCGTCGTCTAATTATGAAATTTTCAACTTTTCAGAAACATTCATTCCTCGTCAAAAATACCGAAAACTGGGCAAACTTTTCTAATCGTTATTTTGTGTTCGCGAGTTTTTACATTACTGTGTTAATAGGTTTGGGGATTACTGTAACGAGGCTCGCGTTTAAAAAATTGAAAGGTACGGTATCTGCGGATCAAGGGATCTCGAGAAAACTGACAAAAATCGCATTGACCAATGGATTTGTGTACTCTGGAATTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGACAATGAGTCAGAGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TCTGTCAAAAACTTCAGAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATGACAATGAGTCAGAGAAAAGAAGAAAAGTTTATTTTTACTGTCTGAACTAGTCTCAACAGACTCTTCTTGGTTCCTCATACTTTTCTTCAAACTATTCCTTCCAAACAACTGATATTTACTTCACTATTGAATTGCTACTTATCTCTGGCTTTGCTCAAAGCTCTGAGCATCCTTGATACACCTGCGAGCTGATTATGTGATCTTTTCCCAAGTTTTGGGAACAACTTTTCTGAAGTTTTTGACAGA</canonical_amplicon>
		<polymorphic_amplicon>GATGACAATGAGTCAGAGAAAAGAAGAAAAGTTTATTTTTACTGTCTGAACTAGTCTCAACAGACTCTTCTTGGTTCCTCATACTTTTCTTYAAACTATTCCTTCCAAACAACTGATATTTACTTCACTATTGAATTGCTACTTATCTCTGGCTTTGCTCAAAGCTCTGAGCATCCTTGATACACCTGCGAGCTGATTATGTGATCTTTTCCCAAGTTTTGGGAACAACTTTTCTGAAGTTTTTGACAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17747</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>136972</contig_pos>
        <strand></strand>
        <context>TAACAGGTTG[T/G]CTTGTTACTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATATTTGTCCAAGACTTCCATGTCCAAGACAACCAAAACATAACAGGTTG</left_flank>
        <right_flank>CTTGTTACTGTCCAACTCTACCCGAACTCTTCTTCACTTGCCTAACACCT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATGCTGGCAAACTTTTCTCTGAGGTCCACCGCCGCTTTCTGCATGTGCTCCTTTCTGACACAAATTCTGCAAGTCATCGGAACTCCTTTGCACACTCCTTGGGTATGGACGAAGTAGGCGGGCTGAAAAATTGCAATTTCGCCCAAGATTTGTCCTAGTCTTGCCCAAGTCTTGCCCAACTTTTATCGAAGGTTTGGCCAAGCCTTGTTTAAGCCTCGACCAAGTCTTCATTAAGTCTTGGGTATGACTTGTTCGAGACTTTCCCAAATCTTGCCCAAGTCTTGCCCAAGGCTTGTCCATCACTTGGTCTGGAATTAATTTGGGCAAGATATGGTCAGCCGTCTGCCAGTCCGCTGAAAGTATAATTCATGGAACTTGGACTACCCATGGGCAGGTCTTGTCCATACCTTGCCCTAGACTTGACCATGCTTGCCCATGACTTTTGTAATATTTGTCCAAGACTTCCATGTCCAAGACAACCAAAACATAACAGGTTGTCTTGTTACTGTCCAACTCTACCCGAACTCTTCTTCACTTGCCTAACACCTGCCCAACACTTGCCCAACCCTAGCCCAACCCTTGCCCAACCCTAGCCCAACCCTTGCCCAACCCACCTTTTCTAAATACTTAGACAACAGAGCATTCAACTGAACAATCTCCATCGATTGATAAGCGCATGCCTCGGTCTCAAAAACCAATTCCAATTTCGGTAGATTATAGTCAGAGAGATCAGGCATTGCTTTTTCTAGTCCCTGGTATTTGATAATCTCCTCACATGTGCATGGTTCAAAAACTGGCTTATCTTGAAGTCCCTTGATTTTTTGTAATTCCGGTCCAAAAACGTTGAGCAGATAGGAAGGAAGCGTCTGTCGGAGATGATCAACTTTTAGAGTGTCAATGAAGAATGGGACCGACTGAAATTAACTGAGTTTATCTCATTTGGATGAACATTTTTAAAAAAGTTGTCAACTACAAAATTAAAGCTCCATGTATTATTG</canonical>
            <polymorphic>CAATGCTGGCAAACTTTTCTCTGAGGTCCACCGCCGCTTTCTGCATGTGCTCCTTTCTGACACAAATTCTGCAAGTCATCGGAACTCCTTTGCACACTCCTTGGGTATGGACGAAGTAGGCGGGCTGAAAAATTGCAATTTCGCCCAAGATTTGTCCTAGTCTTGCCCAAGTCTTGCCCAACTTTTATCGAAGGTTTGGCCAAGCCTTGTTTAAGCCTCGACCAAGTCTTCATTAAGTCTTGGGTATGACTTGTTCGAGACTTTCCCAAATCTTGCCCAAGTCTTGCCCAAGGCTTGTCCATCACTTGGTCTGGAATTAATTTGGGCAAGATATGGTCAGCCGTCTGCCAGTCCGCTGAAAGTATAATTCATGGAACTTGGACTACCCATGGGCAGGTCTTGTCCATACCTTGCCCTAGACTTGACCATGCTTGCCCATGACTTTTGTAATATTTGTCCAAGACTTCCATGTCCAAGACAACCAAAACATAACAGGTTGKCTTGTTACTGTCCAACTCTACCCGAACTCTTCTTCACTTGCCTAACACCTGCCCAACACTTGCCCAACCCTAGCCCAACCCTTGCCCAACCCTAGCCCAACCCTTGCCCAACCCACCTTTTCTAAATACTTAGACAACAGAGCATTCAACTGAACAATCTCCATCGATTGATAAGCGCATGCCTCGGTCTCAAAAACCAATTCCAATTTCGGTAGATTATAGTCAGAGAGATCAGGCATTGCTTTTTCTAGTCCCTGGTATTTGATAATCTCCTCACATGTGCATGGTTCAAAAACTGGCTTATCTTGAAGTCCCTTGATTTTTTGTAATTCCGGTCCAAAAACGTTGAGCAGATAGGAAGGAAGCGTCTGTCGGAGATGATCAACTTTTAGAGTGTCAATGAAGAATGGGACCGACTGAAATTAACTGAGTTTATCTCATTTGGATGAACATTTTTAAAAAAGTTGTCAACTACAAAATTAAAGCTCCATGTATTATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCATGACTTTTGTAATATTTGT</pcr_primer_p1>
		<pcr_primer_p2>CTTATCAATCGATGGAGATTGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CCCATGACTTTTGTAATATTTGTCCAAGACTTCCATGTCCAAGACAACCAAAACATAACAGGTTGTCTTGTTACTGTCCAACTCTACCCGAACTCTTCTTCACTTGCCTAACACCTGCCCAACACTTGCCCAACCCTAGCCCAACCCTTGCCCAACCCTAGCCCAACCCTTGCCCAACCCACCTTTTCTAAATACTTAGACAACAGAGCATTCAACTGAACAATCTCCATCGATTGATAAG</canonical_amplicon>
		<polymorphic_amplicon>CCCATGACTTTTGTAATATTTGTCCAAGACTTCCATGTCCAAGACAACCAAAACATAACAGGTTGKCTTGTTACTGTCCAACTCTACCCGAACTCTTCTTCACTTGCCTAACACCTGCCCAACACTTGCCCAACCCTAGCCCAACCCTTGCCCAACCCTAGCCCAACCCTTGCCCAACCCACCTTTTCTAAATACTTAGACAACAGAGCATTCAACTGAACAATCTCCATCGATTGATAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17748</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>137005</contig_pos>
        <strand></strand>
        <context>CGAACTCTTC[T/C]TCACTTGCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAAAACATAACAGGTTGTCTTGTTACTGTCCAACTCTACCCGAACTCTTC</left_flank>
        <right_flank>TCACTTGCCTAACACCTGCCCAACACTTGCCCAACCCTAGCCCAACCCTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGCTTTCTGCATGTGCTCCTTTCTGACACAAATTCTGCAAGTCATCGGAACTCCTTTGCACACTCCTTGGGTATGGACGAAGTAGGCGGGCTGAAAAATTGCAATTTCGCCCAAGATTTGTCCTAGTCTTGCCCAAGTCTTGCCCAACTTTTATCGAAGGTTTGGCCAAGCCTTGTTTAAGCCTCGACCAAGTCTTCATTAAGTCTTGGGTATGACTTGTTCGAGACTTTCCCAAATCTTGCCCAAGTCTTGCCCAAGGCTTGTCCATCACTTGGTCTGGAATTAATTTGGGCAAGATATGGTCAGCCGTCTGCCAGTCCGCTGAAAGTATAATTCATGGAACTTGGACTACCCATGGGCAGGTCTTGTCCATACCTTGCCCTAGACTTGACCATGCTTGCCCATGACTTTTGTAATATTTGTCCAAGACTTCCATGTCCAAGACAACCAAAACATAACAGGTTGTCTTGTTACTGTCCAACTCTACCCGAACTCTTCTTCACTTGCCTAACACCTGCCCAACACTTGCCCAACCCTAGCCCAACCCTTGCCCAACCCTAGCCCAACCCTTGCCCAACCCACCTTTTCTAAATACTTAGACAACAGAGCATTCAACTGAACAATCTCCATCGATTGATAAGCGCATGCCTCGGTCTCAAAAACCAATTCCAATTTCGGTAGATTATAGTCAGAGAGATCAGGCATTGCTTTTTCTAGTCCCTGGTATTTGATAATCTCCTCACATGTGCATGGTTCAAAAACTGGCTTATCTTGAAGTCCCTTGATTTTTTGTAATTCCGGTCCAAAAACGTTGAGCAGATAGGAAGGAAGCGTCTGTCGGAGATGATCAACTTTTAGAGTGTCAATGAAGAATGGGACCGACTGAAATTAACTGAGTTTATCTCATTTGGATGAACATTTTTAAAAAAGTTGTCAACTACAAAATTAAAGCTCCATGTATTATTGTTTAATTTACTTTGAAATTTACAGCCTCATCCA</canonical>
            <polymorphic>CCGCTTTCTGCATGTGCTCCTTTCTGACACAAATTCTGCAAGTCATCGGAACTCCTTTGCACACTCCTTGGGTATGGACGAAGTAGGCGGGCTGAAAAATTGCAATTTCGCCCAAGATTTGTCCTAGTCTTGCCCAAGTCTTGCCCAACTTTTATCGAAGGTTTGGCCAAGCCTTGTTTAAGCCTCGACCAAGTCTTCATTAAGTCTTGGGTATGACTTGTTCGAGACTTTCCCAAATCTTGCCCAAGTCTTGCCCAAGGCTTGTCCATCACTTGGTCTGGAATTAATTTGGGCAAGATATGGTCAGCCGTCTGCCAGTCCGCTGAAAGTATAATTCATGGAACTTGGACTACCCATGGGCAGGTCTTGTCCATACCTTGCCCTAGACTTGACCATGCTTGCCCATGACTTTTGTAATATTTGTCCAAGACTTCCATGTCCAAGACAACCAAAACATAACAGGTTGTCTTGTTACTGTCCAACTCTACCCGAACTCTTCYTCACTTGCCTAACACCTGCCCAACACTTGCCCAACCCTAGCCCAACCCTTGCCCAACCCTAGCCCAACCCTTGCCCAACCCACCTTTTCTAAATACTTAGACAACAGAGCATTCAACTGAACAATCTCCATCGATTGATAAGCGCATGCCTCGGTCTCAAAAACCAATTCCAATTTCGGTAGATTATAGTCAGAGAGATCAGGCATTGCTTTTTCTAGTCCCTGGTATTTGATAATCTCCTCACATGTGCATGGTTCAAAAACTGGCTTATCTTGAAGTCCCTTGATTTTTTGTAATTCCGGTCCAAAAACGTTGAGCAGATAGGAAGGAAGCGTCTGTCGGAGATGATCAACTTTTAGAGTGTCAATGAAGAATGGGACCGACTGAAATTAACTGAGTTTATCTCATTTGGATGAACATTTTTAAAAAAGTTGTCAACTACAAAATTAAAGCTCCATGTATTATTGTTTAATTTACTTTGAAATTTACAGCCTCATCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCATGACTTTTGTAATATTTGT</pcr_primer_p1>
		<pcr_primer_p2>CTTATCAATCGATGGAGATTGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CCCATGACTTTTGTAATATTTGTCCAAGACTTCCATGTCCAAGACAACCAAAACATAACAGGTTGTCTTGTTACTGTCCAACTCTACCCGAACTCTTCTTCACTTGCCTAACACCTGCCCAACACTTGCCCAACCCTAGCCCAACCCTTGCCCAACCCTAGCCCAACCCTTGCCCAACCCACCTTTTCTAAATACTTAGACAACAGAGCATTCAACTGAACAATCTCCATCGATTGATAAG</canonical_amplicon>
		<polymorphic_amplicon>CCCATGACTTTTGTAATATTTGTCCAAGACTTCCATGTCCAAGACAACCAAAACATAACAGGTTGTCTTGTTACTGTCCAACTCTACCCGAACTCTTCYTCACTTGCCTAACACCTGCCCAACACTTGCCCAACCCTAGCCCAACCCTTGCCCAACCCTAGCCCAACCCTTGCCCAACCCACCTTTTCTAAATACTTAGACAACAGAGCATTCAACTGAACAATCTCCATCGATTGATAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17749</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>138515</contig_pos>
        <strand></strand>
        <context>CCATTTCTTC[C/A]TTCACAAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATGGTTGTCGGTGCCTCTTTCACCCTTTCAATCCCTTTTTCCATTTCTTC</left_flank>
        <right_flank>TTCACAAATTTATGAAATTTCGCTTGAATTTCTTCCCACTCCACATGATC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATATGTATTCTTAGATTCTTATCTTACCTTAAACAAGTCCTGACCCCCATACTTCTTGATCATTTCCTCATATCTGATGGTTTTATGTGTCGACGAGCTCTCAATCCCTTTCTTCAATCCGTCATGAGCCGATTGATTGTCATGTCTGAGCAATGTCTCGTAAGCCATCACAAAATCCCGTTCCTCATTTTCAAAAACCCGCACAAGTTTTGCATCAAAATGCGTCTTCTCAGAATCCGGAAGGAACCAACAATCATATTGTTCAATTATTTCTGCATGCTTTTTGATCACAATTTCCAGCCAATGCAATAGATTTCCATATGTTTCTTCGTTTCCTTTCAACGGAAATTTGTCATCAAACTTGTGGACCAGTACTGCAATATCCGAATATTCTGGATCCCGAGGGCACGGAGGCAGAATCCCTTTTACAGTTTCGAAGACGTCTGGAATGGTTGTCGGTGCCTCTTTCACCCTTTCAATCCCTTTTTCCATTTCTTCCTTCACAAATTTATGAAATTTCGCTTGAATTTCTTCCCACTCCACATGATCAAATTCTGTCAATTCGCAATTTCCATTATATTTCATTTCGTGGGTTTTGAGAAAATATGCTACACACGAGCTGATAAAATCGTTTTCAGGCACTCCGAAGAAATCATAGTAACCCAAATGTTGCATGTAGACGTAGATGTCGTTTTTGTACATGTAGGTGTAGTTTTCGTCGTCTTTGTATTGAATTGGGGAGGTCTGGAAAAAAGCAAATTGGGAAATTCAGAAATCCAGAAGTTCAGGAATCGAAAAATTCATAAATTCGAAAACTCTGGAATTCTAGAAAATTTGAAAAGTGGATAATTTCCGGAATTCCAAGTTTCCGAATTTGATTCGAAAATCATGAAATTCTGAACTTCCAAAATTTCAGAATTCCCAGGAGAATCTGAAAATCGAAGAAATTCAGAAATTTGGCTACTTCTGAAAATTTGGAAATTCAGAAGATCAGAAGTT</canonical>
            <polymorphic>TATATGTATTCTTAGATTCTTATCTTACCTTAAACAAGTCCTGACCCCCATACTTCTTGATCATTTCCTCATATCTGATGGTTTTATGTGTCGACGAGCTCTCAATCCCTTTCTTCAATCCGTCATGAGCCGATTGATTGTCATGTCTGAGCAATGTCTCGTAAGCCATCACAAAATCCCGTTCCTCATTTTCAAAAACCCGCACAAGTTTTGCATCAAAATGCGTCTTCTCAGAATCCGGAAGGAACCAACAATCATATTGTTCAATTATTTCTGCATGCTTTTTGATCACAATTTCCAGCCAATGCAATAGATTTCCATATGTTTCTTCGTTTCCTTTCAACGGAAATTTGTCATCAAACTTGTGGACCAGTACTGCAATATCCGAATATTCTGGATCCCGAGGGCACGGAGGCAGAATCCCTTTTACAGTTTCGAAGACGTCTGGAATGGTTGTCGGTGCCTCTTTCACCCTTTCAATCCCTTTTTCCATTTCTTCMTTCACAAATTTATGAAATTTCGCTTGAATTTCTTCCCACTCCACATGATCAAATTCTGTCAATTCGCAATTTCCATTATATTTCATTTCGTGGGTTTTGAGAAAATATGCTACACACGAGCTGATAAAATCGTTTTCAGGCACTCCGAAGAAATCATAGTAACCCAAATGTTGCATGTAGACGTAGATGTCGTTTTTGTACATGTAGGTGTAGTTTTCGTCGTCTTTGTATTGAATTGGGGAGGTCTGGAAAAAAGCAAATTGGGAAATTCAGAAATCCAGAAGTTCAGGAATCGAAAAATTCATAAATTCGAAAACTCTGGAATTCTAGAAAATTTGAAAAGTGGATAATTTCCGGAATTCCAAGTTTCCGAATTTGATTCGAAAATCATGAAATTCTGAACTTCCAAAATTTCAGAATTCCCAGGAGAATCTGAAAATCGAAGAAATTCAGAAATTTGGCTACTTCTGAAAATTTGGAAATTCAGAAGATCAGAAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGAATCCCTTTTACAGTTT</pcr_primer_p1>
		<pcr_primer_p2>GGTTACTATGATTTCTTCGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCAGAATCCCTTTTACAGTTTCGAAGACGTCTGGAATGGTTGTCGGTGCCTCTTTCACCCTTTCAATCCCTTTTTCCATTTCTTCCTTCACAAATTTATGAAATTTCGCTTGAATTTCTTCCCACTCCACATGATCAAATTCTGTCAATTCGCAATTTCCATTATATTTCATTTCGTGGGTTTTGAGAAAATATGCTACACACGAGCTGATAAAATCGTTTTCAGGCACTCCGAAGAAATCATAGTAACC</canonical_amplicon>
		<polymorphic_amplicon>GCAGAATCCCTTTTACAGTTTCGAAGACGTCTGGAATGGTTGTCGGTGCCTCTTTCACCCTTTCAATCCCTTTTTCCATTTCTTCMTTCACAAATTTATGAAATTTCGCTTGAATTTCTTCCCACTCCACATGATCAAATTCTGTCAATTCGCAATTTCCATTATATTTCATTTCGTGGGTTTTGAGAAAATATGCTACACACGAGCTGATAAAATCGTTTTCAGGCACTCCGAAGAAATCATAGTAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17750</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>138463</contig_pos>
        <strand></strand>
        <context>AAGACGTCTG[G/C]AATGGTTGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>ATCCCGAGGGCACGGAGGCAGAATCCCTTTTACAGTTTCGAAGACGTCTG</left_flank>
        <right_flank>AATGGTTGTCGGTGCCTCTTTCACCCTTTCAATCCCTTTTTCCATTTCTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAAGAAATTAAGAAATTATTAGATTCTGAGATTCTTAGATCCTTATATTCTTATATGTATTCTTAGATTCTTATCTTACCTTAAACAAGTCCTGACCCCCATACTTCTTGATCATTTCCTCATATCTGATGGTTTTATGTGTCGACGAGCTCTCAATCCCTTTCTTCAATCCGTCATGAGCCGATTGATTGTCATGTCTGAGCAATGTCTCGTAAGCCATCACAAAATCCCGTTCCTCATTTTCAAAAACCCGCACAAGTTTTGCATCAAAATGCGTCTTCTCAGAATCCGGAAGGAACCAACAATCATATTGTTCAATTATTTCTGCATGCTTTTTGATCACAATTTCCAGCCAATGCAATAGATTTCCATATGTTTCTTCGTTTCCTTTCAACGGAAATTTGTCATCAAACTTGTGGACCAGTACTGCAATATCCGAATATTCTGGATCCCGAGGGCACGGAGGCAGAATCCCTTTTACAGTTTCGAAGACGTCTGGAATGGTTGTCGGTGCCTCTTTCACCCTTTCAATCCCTTTTTCCATTTCTTCCTTCACAAATTTATGAAATTTCGCTTGAATTTCTTCCCACTCCACATGATCAAATTCTGTCAATTCGCAATTTCCATTATATTTCATTTCGTGGGTTTTGAGAAAATATGCTACACACGAGCTGATAAAATCGTTTTCAGGCACTCCGAAGAAATCATAGTAACCCAAATGTTGCATGTAGACGTAGATGTCGTTTTTGTACATGTAGGTGTAGTTTTCGTCGTCTTTGTATTGAATTGGGGAGGTCTGGAAAAAAGCAAATTGGGAAATTCAGAAATCCAGAAGTTCAGGAATCGAAAAATTCATAAATTCGAAAACTCTGGAATTCTAGAAAATTTGAAAAGTGGATAATTTCCGGAATTCCAAGTTTCCGAATTTGATTCGAAAATCATGAAATTCTGAACTTCCAAAATTTCAGAATTCCCAGGAGAATCTGAAAATCGAAGAAA</canonical>
            <polymorphic>TTAAGAAATTAAGAAATTATTAGATTCTGAGATTCTTAGATCCTTATATTCTTATATGTATTCTTAGATTCTTATCTTACCTTAAACAAGTCCTGACCCCCATACTTCTTGATCATTTCCTCATATCTGATGGTTTTATGTGTCGACGAGCTCTCAATCCCTTTCTTCAATCCGTCATGAGCCGATTGATTGTCATGTCTGAGCAATGTCTCGTAAGCCATCACAAAATCCCGTTCCTCATTTTCAAAAACCCGCACAAGTTTTGCATCAAAATGCGTCTTCTCAGAATCCGGAAGGAACCAACAATCATATTGTTCAATTATTTCTGCATGCTTTTTGATCACAATTTCCAGCCAATGCAATAGATTTCCATATGTTTCTTCGTTTCCTTTCAACGGAAATTTGTCATCAAACTTGTGGACCAGTACTGCAATATCCGAATATTCTGGATCCCGAGGGCACGGAGGCAGAATCCCTTTTACAGTTTCGAAGACGTCTGSAATGGTTGTCGGTGCCTCTTTCACCCTTTCAATCCCTTTTTCCATTTCTTCCTTCACAAATTTATGAAATTTCGCTTGAATTTCTTCCCACTCCACATGATCAAATTCTGTCAATTCGCAATTTCCATTATATTTCATTTCGTGGGTTTTGAGAAAATATGCTACACACGAGCTGATAAAATCGTTTTCAGGCACTCCGAAGAAATCATAGTAACCCAAATGTTGCATGTAGACGTAGATGTCGTTTTTGTACATGTAGGTGTAGTTTTCGTCGTCTTTGTATTGAATTGGGGAGGTCTGGAAAAAAGCAAATTGGGAAATTCAGAAATCCAGAAGTTCAGGAATCGAAAAATTCATAAATTCGAAAACTCTGGAATTCTAGAAAATTTGAAAAGTGGATAATTTCCGGAATTCCAAGTTTCCGAATTTGATTCGAAAATCATGAAATTCTGAACTTCCAAAATTTCAGAATTCCCAGGAGAATCTGAAAATCGAAGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>301 156 114 92 68 59 45 35 32 32 27 16 9 8 6</canonical_bands>
                <polymorphic_bands>346 156 114 92 68 59 35 32 32 27 16 9 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCCATATGTTTCTTCGTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATTGACAGAATTTGATCATGTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTCCATATGTTTCTTCGTTTCCTTTCAACGGAAATTTGTCATCAAACTTGTGGACCAGTACTGCAATATCCGAATATTCTGGATCCCGAGGGCACGGAGGCAGAATCCCTTTTACAGTTTCGAAGACGTCTGGAATGGTTGTCGGTGCCTCTTTCACCCTTTCAATCCCTTTTTCCATTTCTTCCTTCACAAATTTATGAAATTTCGCTTGAATTTCTTCCCACTCCACATGATCAAATTCTGTCAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCCATATGTTTCTTCGTTTCCTTTCAACGGAAATTTGTCATCAAACTTGTGGACCAGTACTGCAATATCCGAATATTCTGGATCCCGAGGGCACGGAGGCAGAATCCCTTTTACAGTTTCGAAGACGTCTGSAATGGTTGTCGGTGCCTCTTTCACCCTTTCAATCCCTTTTTCCATTTCTTCCTTCACAAATTTATGAAATTTCGCTTGAATTTCTTCCCACTCCACATGATCAAATTCTGTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17751</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>138392</contig_pos>
        <strand></strand>
        <context>GGACCAGTAC[T/C]GCAATATCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCTTCGTTTCCTTTCAACGGAAATTTGTCATCAAACTTGTGGACCAGTAC</left_flank>
        <right_flank>GCAATATCCGAATATTCTGGATCCCGAGGGCACGGAGGCAGAATCCCTTT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAGTGAAGTTCTGAGTTTCCAAAATTCCGGTATTCAAAACGGGATATTCTGAGAATACGAAACTCAGAAATTAAGAAATTAAGAAATTATTAGATTCTGAGATTCTTAGATCCTTATATTCTTATATGTATTCTTAGATTCTTATCTTACCTTAAACAAGTCCTGACCCCCATACTTCTTGATCATTTCCTCATATCTGATGGTTTTATGTGTCGACGAGCTCTCAATCCCTTTCTTCAATCCGTCATGAGCCGATTGATTGTCATGTCTGAGCAATGTCTCGTAAGCCATCACAAAATCCCGTTCCTCATTTTCAAAAACCCGCACAAGTTTTGCATCAAAATGCGTCTTCTCAGAATCCGGAAGGAACCAACAATCATATTGTTCAATTATTTCTGCATGCTTTTTGATCACAATTTCCAGCCAATGCAATAGATTTCCATATGTTTCTTCGTTTCCTTTCAACGGAAATTTGTCATCAAACTTGTGGACCAGTACTGCAATATCCGAATATTCTGGATCCCGAGGGCACGGAGGCAGAATCCCTTTTACAGTTTCGAAGACGTCTGGAATGGTTGTCGGTGCCTCTTTCACCCTTTCAATCCCTTTTTCCATTTCTTCCTTCACAAATTTATGAAATTTCGCTTGAATTTCTTCCCACTCCACATGATCAAATTCTGTCAATTCGCAATTTCCATTATATTTCATTTCGTGGGTTTTGAGAAAATATGCTACACACGAGCTGATAAAATCGTTTTCAGGCACTCCGAAGAAATCATAGTAACCCAAATGTTGCATGTAGACGTAGATGTCGTTTTTGTACATGTAGGTGTAGTTTTCGTCGTCTTTGTATTGAATTGGGGAGGTCTGGAAAAAAGCAAATTGGGAAATTCAGAAATCCAGAAGTTCAGGAATCGAAAAATTCATAAATTCGAAAACTCTGGAATTCTAGAAAATTTGAAAAGTGGATAATTTCCGGAATTCCAAGTTTCCGAATTT</canonical>
            <polymorphic>CAAGTGAAGTTCTGAGTTTCCAAAATTCCGGTATTCAAAACGGGATATTCTGAGAATACGAAACTCAGAAATTAAGAAATTAAGAAATTATTAGATTCTGAGATTCTTAGATCCTTATATTCTTATATGTATTCTTAGATTCTTATCTTACCTTAAACAAGTCCTGACCCCCATACTTCTTGATCATTTCCTCATATCTGATGGTTTTATGTGTCGACGAGCTCTCAATCCCTTTCTTCAATCCGTCATGAGCCGATTGATTGTCATGTCTGAGCAATGTCTCGTAAGCCATCACAAAATCCCGTTCCTCATTTTCAAAAACCCGCACAAGTTTTGCATCAAAATGCGTCTTCTCAGAATCCGGAAGGAACCAACAATCATATTGTTCAATTATTTCTGCATGCTTTTTGATCACAATTTCCAGCCAATGCAATAGATTTCCATATGTTTCTTCGTTTCCTTTCAACGGAAATTTGTCATCAAACTTGTGGACCAGTACYGCAATATCCGAATATTCTGGATCCCGAGGGCACGGAGGCAGAATCCCTTTTACAGTTTCGAAGACGTCTGGAATGGTTGTCGGTGCCTCTTTCACCCTTTCAATCCCTTTTTCCATTTCTTCCTTCACAAATTTATGAAATTTCGCTTGAATTTCTTCCCACTCCACATGATCAAATTCTGTCAATTCGCAATTTCCATTATATTTCATTTCGTGGGTTTTGAGAAAATATGCTACACACGAGCTGATAAAATCGTTTTCAGGCACTCCGAAGAAATCATAGTAACCCAAATGTTGCATGTAGACGTAGATGTCGTTTTTGTACATGTAGGTGTAGTTTTCGTCGTCTTTGTATTGAATTGGGGAGGTCTGGAAAAAAGCAAATTGGGAAATTCAGAAATCCAGAAGTTCAGGAATCGAAAAATTCATAAATTCGAAAACTCTGGAATTCTAGAAAATTTGAAAAGTGGATAATTTCCGGAATTCCAAGTTTCCGAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGTACT</site>
                <isoschizomers>
                    <enzyme>Acc113I</enzyme>
                    <enzyme>ScaI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>336 295 204 71 63 31</canonical_bands>
                <polymorphic_bands>366 336 204 63 31</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>495 325 180</canonical_bands>
                <polymorphic_bands>820 180</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCCATATGTTTCTTCGTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATTGACAGAATTTGATCATGTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTCCATATGTTTCTTCGTTTCCTTTCAACGGAAATTTGTCATCAAACTTGTGGACCAGTACTGCAATATCCGAATATTCTGGATCCCGAGGGCACGGAGGCAGAATCCCTTTTACAGTTTCGAAGACGTCTGGAATGGTTGTCGGTGCCTCTTTCACCCTTTCAATCCCTTTTTCCATTTCTTCCTTCACAAATTTATGAAATTTCGCTTGAATTTCTTCCCACTCCACATGATCAAATTCTGTCAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCCATATGTTTCTTCGTTTCCTTTCAACGGAAATTTGTCATCAAACTTGTGGACCAGTACYGCAATATCCGAATATTCTGGATCCCGAGGGCACGGAGGCAGAATCCCTTTTACAGTTTCGAAGACGTCTGGAATGGTTGTCGGTGCCTCTTTCACCCTTTCAATCCCTTTTTCCATTTCTTCCTTCACAAATTTATGAAATTTCGCTTGAATTTCTTCCCACTCCACATGATCAAATTCTGTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17752</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>3619</contig_pos>
        <strand>+</strand>
        <context>TAGGAAAAAA[A/G]TTAGCTAACC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCTGAAAAAAATGCAGGTGTTTTTTAAACATTTTCTAATTAGGAAAAAA</left_flank>
        <right_flank>TTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTAGAACGACCTATTTTGACATTTCCCCCACTTTTCTCCATTTTGAAATTTTTTGTTTAATGAATATTGTTCGTTGAGTGTAATGAGCAGAGTTGTGATTTTTGATCACCTAACTTTTTTATACTAGTACAAAAGTGGCAGTGGGTCCCACAACGACAACTACCGTATCACAAAAAGTGTTTTTATTATTTTCCGGATTTATTAACTCGATCCTAGTTCGTTTTCGGTCAATTTTTTTTCACTTTATCAATTTTAGACGTGTTTGACGAAAAGCTTTCCGTCGATTTTTTTTTGTTTTTTTTTCCACAAAGTTAGTAAATCCAGAAAAGTTAGTAAATCCAGAAAAGTATTTTCAGGTTACGGTAGTTTTCGCTATGGGACCTTTCGGCGTCTCTCTTCCACGGCACCAATATGTTTGTACCAGGATAATAATAGTCTCAGATACAATACCTGAAAAAAATGCAGGTGTTTTTTAAACATTTTCTAATTAGGAAAAAAGTTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAATCAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCATAACCGGTCGTCTGGGGCGTAACCTCTTCAAGCGCACACCCTCACCAAAAACTTCTTTTCATCTACTTCATCTTTCTTTTTCTAACGGTATATATTTTTGGTGTCAAACTGGTATTTGTTAGTGGCCTCATCTATAGGTTAGTACAGTTCATCTACTATAAATTCTCGATTCTCAAGAGGTCAGATGAATAGGAGAGGAGAAAGAGACAGAAAAAAAGAAAAAGAAAGGAAATGATGGATCACTCGTTCTTCTTT</canonical>
            <polymorphic>GTTAGAACGACCTATTTTGACATTTCCCCCACTTTTCTCCATTTTGAAATTTTTTGTTTAATGAATATTGTTCGTTGAGTGTAATGAGCAGAGTTGTGATTTTTGATCACCTAACTTTTTTATACTAGTACAAAAGTGGCAGTGGGTCCCACAACGACAACTACCGTATCACAAAAAGTGTTTTTATTATTTTCCGGATTTATTAACTCGATCCTAGTTCGTTTTCGGTCAATTTTTTTTCACTTTATCAATTTTAGACGTGTTTGACGAAAAGCTTTCCGTCGATTTTTTTTTGTTTTTTTTTCCACAAAGTTAGTAAATCCAGAAAAGTTAGTAAATCCAGAAAAGTATTTTCAGGTTACGGTAGTTTTCGCTATGGGACCTTTCGGCGTCTCTCTTCCACGGCACCAATATGTTTGTACCAGGATAATAATAGTCTCAGATACAATACCTGAAAAAAATGCAGGTGTTTTTTAAACATTTTCTAATTAGGAAAAAARTTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAATCAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCATAACCGGTCGTCTGGGGCGTAACCTCTTCAAGCGCACACCCTCACCAAAAACTTCTTTTCATCTACTTCATCTTTCTTTTTCTAACGGTATATATTTTTGGTGTCAAACTGGTATTTGTTAGTGGCCTCATCTATAGGTTAGTACAGTTCATCTACTATAAATTCTCGATTCTCAAGAGGTCAGATGAATAGGAGAGGAGAAAGAGACAGAAAAAAAGAAAAAGAAAGGAAATGATGGATCACTCGTTCTTCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTCAGATACAATACCTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGATTAAAGGAAATGGAATACA</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>GTCTCAGATACAATACCTGAAAAAAATGCAGGTGTTTTTTAAACATTTTCTAATTAGGAAAAAAGTTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAATCAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTC</canonical_amplicon>
		<polymorphic_amplicon>GTCTCAGATACAATACCTGAAAAAAATGCAGGTGTTTTTTAAACATTTTCTAATTAGGAAAAAARTTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAATCAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17753</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>3676</contig_pos>
        <strand>+</strand>
        <context>TTTCTCCAAA[A/T]CRGGGCSTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAA</left_flank>
        <right_flank>CAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAATGAATATTGTTCGTTGAGTGTAATGAGCAGAGTTGTGATTTTTGATCACCTAACTTTTTTATACTAGTACAAAAGTGGCAGTGGGTCCCACAACGACAACTACCGTATCACAAAAAGTGTTTTTATTATTTTCCGGATTTATTAACTCGATCCTAGTTCGTTTTCGGTCAATTTTTTTTCACTTTATCAATTTTAGACGTGTTTGACGAAAAGCTTTCCGTCGATTTTTTTTTGTTTTTTTTTCCACAAAGTTAGTAAATCCAGAAAAGTTAGTAAATCCAGAAAAGTATTTTCAGGTTACGGTAGTTTTCGCTATGGGACCTTTCGGCGTCTCTCTTCCACGGCACCAATATGTTTGTACCAGGATAATAATAGTCTCAGATACAATACCTGAAAAAAATGCAGGTGTTTTTTAAACATTTTCTAATTAGGAAAAAAGTTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAATCAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCATAACCGGTCGTCTGGGGCGTAACCTCTTCAAGCGCACACCCTCACCAAAAACTTCTTTTCATCTACTTCATCTTTCTTTTTCTAACGGTATATATTTTTGGTGTCAAACTGGTATTTGTTAGTGGCCTCATCTATAGGTTAGTACAGTTCATCTACTATAAATTCTCGATTCTCAAGAGGTCAGATGAATAGGAGAGGAGAAAGAGACAGAAAAAAAGAAAAAGAAAGGAAATGATGGATCACTCGTTCTTCTTTCCGCAATTTATCTTTATCACCTTCTTCACAACGATAATGACAGTTGGCGGTTGAGGT</canonical>
            <polymorphic>TTAATGAATATTGTTCGTTGAGTGTAATGAGCAGAGTTGTGATTTTTGATCACCTAACTTTTTTATACTAGTACAAAAGTGGCAGTGGGTCCCACAACGACAACTACCGTATCACAAAAAGTGTTTTTATTATTTTCCGGATTTATTAACTCGATCCTAGTTCGTTTTCGGTCAATTTTTTTTCACTTTATCAATTTTAGACGTGTTTGACGAAAAGCTTTCCGTCGATTTTTTTTTGTTTTTTTTTCCACAAAGTTAGTAAATCCAGAAAAGTTAGTAAATCCAGAAAAGTATTTTCAGGTTACGGTAGTTTTCGCTATGGGACCTTTCGGCGTCTCTCTTCCACGGCACCAATATGTTTGTACCAGGATAATAATAGTCTCAGATACAATACCTGAAAAAAATGCAGGTGTTTTTTAAACATTTTCTAATTAGGAAAAAAGTTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAAWCAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCATAACCGGTCGTCTGGGGCGTAACCTCTTCAAGCGCACACCCTCACCAAAAACTTCTTTTCATCTACTTCATCTTTCTTTTTCTAACGGTATATATTTTTGGTGTCAAACTGGTATTTGTTAGTGGCCTCATCTATAGGTTAGTACAGTTCATCTACTATAAATTCTCGATTCTCAAGAGGTCAGATGAATAGGAGAGGAGAAAGAGACAGAAAAAAAGAAAAAGAAAGGAAATGATGGATCACTCGTTCTTCTTTCCGCAATTTATCTTTATCACCTTCTTCACAACGATAATGACAGTTGGCGGTTGAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGCTAACCAAAGCTCGTATAG</pcr_primer_p1>
		<pcr_primer_p2>TGCAAATTTAGGTATCTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAATCAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCA</canonical_amplicon>
		<polymorphic_amplicon>TTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAAWCAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17754</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>3678</contig_pos>
        <strand>+</strand>
        <context>TCTCCAAAWC[A/G]GGGCSTGACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAATC</left_flank>
        <right_flank>GGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGAATATTGTTCGTTGAGTGTAATGAGCAGAGTTGTGATTTTTGATCACCTAACTTTTTTATACTAGTACAAAAGTGGCAGTGGGTCCCACAACGACAACTACCGTATCACAAAAAGTGTTTTTATTATTTTCCGGATTTATTAACTCGATCCTAGTTCGTTTTCGGTCAATTTTTTTTCACTTTATCAATTTTAGACGTGTTTGACGAAAAGCTTTCCGTCGATTTTTTTTTGTTTTTTTTTCCACAAAGTTAGTAAATCCAGAAAAGTTAGTAAATCCAGAAAAGTATTTTCAGGTTACGGTAGTTTTCGCTATGGGACCTTTCGGCGTCTCTCTTCCACGGCACCAATATGTTTGTACCAGGATAATAATAGTCTCAGATACAATACCTGAAAAAAATGCAGGTGTTTTTTAAACATTTTCTAATTAGGAAAAAAGTTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAATCAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCATAACCGGTCGTCTGGGGCGTAACCTCTTCAAGCGCACACCCTCACCAAAAACTTCTTTTCATCTACTTCATCTTTCTTTTTCTAACGGTATATATTTTTGGTGTCAAACTGGTATTTGTTAGTGGCCTCATCTATAGGTTAGTACAGTTCATCTACTATAAATTCTCGATTCTCAAGAGGTCAGATGAATAGGAGAGGAGAAAGAGACAGAAAAAAAGAAAAAGAAAGGAAATGATGGATCACTCGTTCTTCTTTCCGCAATTTATCTTTATCACCTTCTTCACAACGATAATGACAGTTGGCGGTTGAGGTTT</canonical>
            <polymorphic>AATGAATATTGTTCGTTGAGTGTAATGAGCAGAGTTGTGATTTTTGATCACCTAACTTTTTTATACTAGTACAAAAGTGGCAGTGGGTCCCACAACGACAACTACCGTATCACAAAAAGTGTTTTTATTATTTTCCGGATTTATTAACTCGATCCTAGTTCGTTTTCGGTCAATTTTTTTTCACTTTATCAATTTTAGACGTGTTTGACGAAAAGCTTTCCGTCGATTTTTTTTTGTTTTTTTTTCCACAAAGTTAGTAAATCCAGAAAAGTTAGTAAATCCAGAAAAGTATTTTCAGGTTACGGTAGTTTTCGCTATGGGACCTTTCGGCGTCTCTCTTCCACGGCACCAATATGTTTGTACCAGGATAATAATAGTCTCAGATACAATACCTGAAAAAAATGCAGGTGTTTTTTAAACATTTTCTAATTAGGAAAAAAGTTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAATCRGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCATAACCGGTCGTCTGGGGCGTAACCTCTTCAAGCGCACACCCTCACCAAAAACTTCTTTTCATCTACTTCATCTTTCTTTTTCTAACGGTATATATTTTTGGTGTCAAACTGGTATTTGTTAGTGGCCTCATCTATAGGTTAGTACAGTTCATCTACTATAAATTCTCGATTCTCAAGAGGTCAGATGAATAGGAGAGGAGAAAGAGACAGAAAAAAAGAAAAAGAAAGGAAATGATGGATCACTCGTTCTTCTTTCCGCAATTTATCTTTATCACCTTCTTCACAACGATAATGACAGTTGGCGGTTGAGGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGCTAACCAAAGCTCGTATAG</pcr_primer_p1>
		<pcr_primer_p2>TGCAAATTTAGGTATCTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAATCAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCA</canonical_amplicon>
		<polymorphic_amplicon>TTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAATCRGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17755</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>3683</contig_pos>
        <strand>+</strand>
        <context>AAAWCRGGGC[C/G]TGACCGTTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAATCAGGGC</left_flank>
        <right_flank>TGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATTGTTCGTTGAGTGTAATGAGCAGAGTTGTGATTTTTGATCACCTAACTTTTTTATACTAGTACAAAAGTGGCAGTGGGTCCCACAACGACAACTACCGTATCACAAAAAGTGTTTTTATTATTTTCCGGATTTATTAACTCGATCCTAGTTCGTTTTCGGTCAATTTTTTTTCACTTTATCAATTTTAGACGTGTTTGACGAAAAGCTTTCCGTCGATTTTTTTTTGTTTTTTTTTCCACAAAGTTAGTAAATCCAGAAAAGTTAGTAAATCCAGAAAAGTATTTTCAGGTTACGGTAGTTTTCGCTATGGGACCTTTCGGCGTCTCTCTTCCACGGCACCAATATGTTTGTACCAGGATAATAATAGTCTCAGATACAATACCTGAAAAAAATGCAGGTGTTTTTTAAACATTTTCTAATTAGGAAAAAAGTTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAATCAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCATAACCGGTCGTCTGGGGCGTAACCTCTTCAAGCGCACACCCTCACCAAAAACTTCTTTTCATCTACTTCATCTTTCTTTTTCTAACGGTATATATTTTTGGTGTCAAACTGGTATTTGTTAGTGGCCTCATCTATAGGTTAGTACAGTTCATCTACTATAAATTCTCGATTCTCAAGAGGTCAGATGAATAGGAGAGGAGAAAGAGACAGAAAAAAAGAAAAAGAAAGGAAATGATGGATCACTCGTTCTTCTTTCCGCAATTTATCTTTATCACCTTCTTCACAACGATAATGACAGTTGGCGGTTGAGGTTTGGAAG</canonical>
            <polymorphic>ATATTGTTCGTTGAGTGTAATGAGCAGAGTTGTGATTTTTGATCACCTAACTTTTTTATACTAGTACAAAAGTGGCAGTGGGTCCCACAACGACAACTACCGTATCACAAAAAGTGTTTTTATTATTTTCCGGATTTATTAACTCGATCCTAGTTCGTTTTCGGTCAATTTTTTTTCACTTTATCAATTTTAGACGTGTTTGACGAAAAGCTTTCCGTCGATTTTTTTTTGTTTTTTTTTCCACAAAGTTAGTAAATCCAGAAAAGTTAGTAAATCCAGAAAAGTATTTTCAGGTTACGGTAGTTTTCGCTATGGGACCTTTCGGCGTCTCTCTTCCACGGCACCAATATGTTTGTACCAGGATAATAATAGTCTCAGATACAATACCTGAAAAAAATGCAGGTGTTTTTTAAACATTTTCTAATTAGGAAAAAAGTTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAATCAGGGCSTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCATAACCGGTCGTCTGGGGCGTAACCTCTTCAAGCGCACACCCTCACCAAAAACTTCTTTTCATCTACTTCATCTTTCTTTTTCTAACGGTATATATTTTTGGTGTCAAACTGGTATTTGTTAGTGGCCTCATCTATAGGTTAGTACAGTTCATCTACTATAAATTCTCGATTCTCAAGAGGTCAGATGAATAGGAGAGGAGAAAGAGACAGAAAAAAAGAAAAAGAAAGGAAATGATGGATCACTCGTTCTTCTTTCCGCAATTTATCTTTATCACCTTCTTCACAACGATAATGACAGTTGGCGGTTGAGGTTTGGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>147 118 95 76 62 62 59 45 36 35 33 32 29 21 21 20 20 17 17 11 9 9 7 6 6 5 2</canonical_bands>
                <polymorphic_bands>147 118 95 76 62 62 59 56 45 36 33 32 29 21 20 20 17 17 11 9 9 7 6 6 5 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>301 293 206 200</canonical_bands>
                <polymorphic_bands>406 301 293</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGCTAACCAAAGCTCGTATAG</pcr_primer_p1>
		<pcr_primer_p2>TGCAAATTTAGGTATCTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAATCAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCA</canonical_amplicon>
		<polymorphic_amplicon>TTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAATCAGGGCSTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17756</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>3737</contig_pos>
        <strand>+</strand>
        <context>ATCGACCCCT[A/G]GTTGGACCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCT</left_flank>
        <right_flank>GTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTATACTAGTACAAAAGTGGCAGTGGGTCCCACAACGACAACTACCGTATCACAAAAAGTGTTTTTATTATTTTCCGGATTTATTAACTCGATCCTAGTTCGTTTTCGGTCAATTTTTTTTCACTTTATCAATTTTAGACGTGTTTGACGAAAAGCTTTCCGTCGATTTTTTTTTGTTTTTTTTTCCACAAAGTTAGTAAATCCAGAAAAGTTAGTAAATCCAGAAAAGTATTTTCAGGTTACGGTAGTTTTCGCTATGGGACCTTTCGGCGTCTCTCTTCCACGGCACCAATATGTTTGTACCAGGATAATAATAGTCTCAGATACAATACCTGAAAAAAATGCAGGTGTTTTTTAAACATTTTCTAATTAGGAAAAAAGTTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAATCAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCATAACCGGTCGTCTGGGGCGTAACCTCTTCAAGCGCACACCCTCACCAAAAACTTCTTTTCATCTACTTCATCTTTCTTTTTCTAACGGTATATATTTTTGGTGTCAAACTGGTATTTGTTAGTGGCCTCATCTATAGGTTAGTACAGTTCATCTACTATAAATTCTCGATTCTCAAGAGGTCAGATGAATAGGAGAGGAGAAAGAGACAGAAAAAAAGAAAAAGAAAGGAAATGATGGATCACTCGTTCTTCTTTCCGCAATTTATCTTTATCACCTTCTTCACAACGATAATGACAGTTGGCGGTTGAGGTTTGGAAGATGTGCTTCTTAGATTGTTTTTCTGTTTTGAACTTTTTTTTTAAGTACCGTATT</canonical>
            <polymorphic>TTTATACTAGTACAAAAGTGGCAGTGGGTCCCACAACGACAACTACCGTATCACAAAAAGTGTTTTTATTATTTTCCGGATTTATTAACTCGATCCTAGTTCGTTTTCGGTCAATTTTTTTTCACTTTATCAATTTTAGACGTGTTTGACGAAAAGCTTTCCGTCGATTTTTTTTTGTTTTTTTTTCCACAAAGTTAGTAAATCCAGAAAAGTTAGTAAATCCAGAAAAGTATTTTCAGGTTACGGTAGTTTTCGCTATGGGACCTTTCGGCGTCTCTCTTCCACGGCACCAATATGTTTGTACCAGGATAATAATAGTCTCAGATACAATACCTGAAAAAAATGCAGGTGTTTTTTAAACATTTTCTAATTAGGAAAAAAGTTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAATCAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTRGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCATAACCGGTCGTCTGGGGCGTAACCTCTTCAAGCGCACACCCTCACCAAAAACTTCTTTTCATCTACTTCATCTTTCTTTTTCTAACGGTATATATTTTTGGTGTCAAACTGGTATTTGTTAGTGGCCTCATCTATAGGTTAGTACAGTTCATCTACTATAAATTCTCGATTCTCAAGAGGTCAGATGAATAGGAGAGGAGAAAGAGACAGAAAAAAAGAAAAAGAAAGGAAATGATGGATCACTCGTTCTTCTTTCCGCAATTTATCTTTATCACCTTCTTCACAACGATAATGACAGTTGGCGGTTGAGGTTTGGAAGATGTGCTTCTTAGATTGTTTTTCTGTTTTGAACTTTTTTTTTAAGTACCGTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>502 305 193</canonical_bands>
                <polymorphic_bands>695 305</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>479 282 214 25</canonical_bands>
                <polymorphic_bands>479 282 239</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>502 305 193</canonical_bands>
                <polymorphic_bands>695 305</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGCTAACCAAAGCTCGTATAG</pcr_primer_p1>
		<pcr_primer_p2>TGCAAATTTAGGTATCTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAATCAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCA</canonical_amplicon>
		<polymorphic_amplicon>TTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAATCAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTRGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17757</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>9457</contig_pos>
        <strand>+</strand>
        <context>AATTTCAATT[C/T]AACTCAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAAATTTCCGGTACATTCTTTCCGTTTGGATTTCTGTATAATTTCAATT</left_flank>
        <right_flank>AACTCAAAAACTACTACTCCAAACCAACCCATATTTGGCGAAATTGGTTA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGATTGAACTTGAATTGTTCTCAAAACTATTCCCCCACTCGAAATTTTCTATTGAACTAGATAATCCATTTTTGAAATGGAATCAATTGTTCATTCCCTCTTATATTTCATTTTCTAACTGATTTTGTCCTAATTTCTGTACACCTTGGGTCTTTCTGTTCTTTTCCTTTTCACCTGCTTGTTTCTACGTTTCGAAAACGCCCTTTTTAAATCTTCAAAATCCAAAATTTTCCAAACAAAATAAAAATTCAGATTTTGAGAGAAAGTTTTCATTTAACTAACACACAATTACAATTTATTTCCATACACAATTTCTTGATATTTCTTCCCACTCTTGTTGACTTCATCCAACGCTTTTAGTCTTCCATTTTGGAAATTATCTCTCATTTCACTCTTCGGATAGTCGATCTTGAAATATCTATCTGGATGATCTACGTTATACTTCTTCCAAATTTCCGGTACATTCTTTCCGTTTGGATTTCTGTATAATTTCAATTTAACTCAAAAACTACTACTCCAAACCAACCCATATTTGGCGAAATTGGTTACCGTAGTCCCCATAATATCCATCACTTTCAATTCCTCCTCAGTTGGACTGAATTTTCCCATTCCCTCTCCAACAATGAATTTTAACTCGGATCCGTGAGTGGCTGCCTTAAAAGCCAGCGTTGCTGCCATAGGAGGGTCGATTCCATCTTTGCAGTAGTAGTCGAACGAAGCCAAGTATACATTATTTCCGTATTTGGCACAGGATTTCGCAGTGTTCAATATACCAATGTTAAACCAGGCGTCCCCAACAAACTGAAAATTTAATAAAATCAAGTGTTATCAAATGCAGAATTTACTTACTTCAACAGTTCTTTTCATAACCGCATCCTTGTCTGTAGTGTCTACGTCTTTCATATAAAGCTCAACTAGCTTCTTTTTGTTTTCTTCAACATCATTCACCATGTCTTCCCCAAATAATAATGAGACAGTTTCGTTAAAGGGTTGTCCTT</canonical>
            <polymorphic>ATTGATTGAACTTGAATTGTTCTCAAAACTATTCCCCCACTCGAAATTTTCTATTGAACTAGATAATCCATTTTTGAAATGGAATCAATTGTTCATTCCCTCTTATATTTCATTTTCTAACTGATTTTGTCCTAATTTCTGTACACCTTGGGTCTTTCTGTTCTTTTCCTTTTCACCTGCTTGTTTCTACGTTTCGAAAACGCCCTTTTTAAATCTTCAAAATCCAAAATTTTCCAAACAAAATAAAAATTCAGATTTTGAGAGAAAGTTTTCATTTAACTAACACACAATTACAATTTATTTCCATACACAATTTCTTGATATTTCTTCCCACTCTTGTTGACTTCATCCAACGCTTTTAGTCTTCCATTTTGGAAATTATCTCTCATTTCACTCTTCGGATAGTCGATCTTGAAATATCTATCTGGATGATCTACGTTATACTTCTTCCAAATTTCCGGTACATTCTTTCCGTTTGGATTTCTGTATAATTTCAATTYAACTCAAAAACTACTACTCCAAACCAACCCATATTTGGCGAAATTGGTTACCGTAGTCCCCATAATATCCATCACTTTCAATTCCTCCTCAGTTGGACTGAATTTTCCCATTCCCTCTCCAACAATGAATTTTAACTCGGATCCGTGAGTGGCTGCCTTAAAAGCCAGCGTTGCTGCCATAGGAGGGTCGATTCCATCTTTGCAGTAGTAGTCGAACGAAGCCAAGTATACATTATTTCCGTATTTGGCACAGGATTTCGCAGTGTTCAATATACCAATGTTAAACCAGGCGTCCCCAACAAACTGAAAATTTAATAAAATCAAGTGTTATCAAATGCAGAATTTACTTACTTCAACAGTTCTTTTCATAACCGCATCCTTGTCTGTAGTGTCTACGTCTTTCATATAAAGCTCAACTAGCTTCTTTTTGTTTTCTTCAACATCATTCACCATGTCTTCCCCAAATAATAATGAGACAGTTTCGTTAAAGGGTTGTCCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>223 209 173 133 123 67 31 26 15</canonical_bands>
                <polymorphic_bands>356 209 173 123 67 31 26 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATTTCTTCCCACTCTTGTTG</pcr_primer_p1>
		<pcr_primer_p2>GATATTATGGGGACTACGGTAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATATTTCTTCCCACTCTTGTTGACTTCATCCAACGCTTTTAGTCTTCCATTTTGGAAATTATCTCTCATTTCACTCTTCGGATAGTCGATCTTGAAATATCTATCTGGATGATCTACGTTATACTTCTTCCAAATTTCCGGTACATTCTTTCCGTTTGGATTTCTGTATAATTTCAATTTAACTCAAAAACTACTACTCCAAACCAACCCATATTTGGCGAAATTGGTTACCGTAGTCCCCATAATATC</canonical_amplicon>
		<polymorphic_amplicon>ATATTTCTTCCCACTCTTGTTGACTTCATCCAACGCTTTTAGTCTTCCATTTTGGAAATTATCTCTCATTTCACTCTTCGGATAGTCGATCTTGAAATATCTATCTGGATGATCTACGTTATACTTCTTCCAAATTTCCGGTACATTCTTTCCGTTTGGATTTCTGTATAATTTCAATTYAACTCAAAAACTACTACTCCAAACCAACCCATATTTGGCGAAATTGGTTACCGTAGTCCCCATAATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17786</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>70715</contig_pos>
        <strand></strand>
        <context>CGTCCCTCGA[T/A]AAATGAATCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGACGGTTGATCAGAGGAAAGTCCATGGGGTGGTCGGGAGCGTCCCTCGA</left_flank>
        <right_flank>AAATGAATCTCCAGTGACCAAATCAAATGGTGGGCGAGTGTTATCTCCTC</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGACAGATGATTTTTTTGGATTTAGGGTATGTCTTCTGACGTAACGATGTATAATACTTAGTGTTCAGGTACTTCAGCTTAGCTTGCGTGGCTCAGTCGGTAGCGGCGCAGCACCTTCAATACTCGTCCCACAAGTTCAACCCCTCGAGCGTTTTTATGCTCCCCCCCCCCTCTCTTTAAAAAAATCAATACAATTTCGCTTTGCTTCTTCCTACTGTTTTTTTTCCTAATTCTAAATATTTCTTATCTTTTCTTAAGTTCTATTTCTGTACTTTTTTCAATGACTAACACAGTGTTGCAAACATAAATATTTATACATAGATTCAAAATAATTTACAAATTTACATGTTGACAATAGAATGTACAAAAACATTTAGAGAAAGTCATATAGGAGCTTTTTCGTGCTCATTTAATTGCTGTCAGTGGTTGCCTCAAAGACTCCTCCGAATGACGGTTGATCAGAGGAAAGTCCATGGGGTGGTCGGGAGCGTCCCTCGATAAATGAATCTCCAGTGACCAAATCAAATGGTGGGCGAGTGTTATCTCCTCCGAACAGCGGTCTATCAGATGAAAGTCCATGTGGTGGTCTAGAGCGTCCCTGAAATAGTTAGGATAAAGATTGTCGACGAAATTGAAAAAAAAAAACTCACCTCAAAAGATGTCTCTCCAGTGACAAATTTAAATGGTGGACGGGTATTATCACCTCCGAATGGTGGTTGATCAGATGAGAGTCCTTGTTGGGGATGGGAGCGTCCCTGGAATAATTAAGATACTGCTTGCCAATTAAATTGCAAAAAAACTCACTTTGAAAGATGGCTCTCCAGTGACAAATTCAAATGGTGGACGGGTGTTATCACCTCCAAATGGTGGGCGAGAGCGTCCCTCGAAAAGCGGCTCCCCAGTTGCAAAATTAAATGGTGGGCGAGTGTTATCCTGTAGAATCATTGATTGACTTTGTTATCTGACTGTTATGTTCAAAAAACTTACTACTCCGAATGG</canonical>
            <polymorphic>GGGACAGATGATTTTTTTGGATTTAGGGTATGTCTTCTGACGTAACGATGTATAATACTTAGTGTTCAGGTACTTCAGCTTAGCTTGCGTGGCTCAGTCGGTAGCGGCGCAGCACCTTCAATACTCGTCCCACAAGTTCAACCCCTCGAGCGTTTTTATGCTCCCCCCCCCCTCTCTTTAAAAAAATCAATACAATTTCGCTTTGCTTCTTCCTACTGTTTTTTTTCCTAATTCTAAATATTTCTTATCTTTTCTTAAGTTCTATTTCTGTACTTTTTTCAATGACTAACACAGTGTTGCAAACATAAATATTTATACATAGATTCAAAATAATTTACAAATTTACATGTTGACAATAGAATGTACAAAAACATTTAGAGAAAGTCATATAGGAGCTTTTTCGTGCTCATTTAATTGCTGTCAGTGGTTGCCTCAAAGACTCCTCCGAATGACGGTTGATCAGAGGAAAGTCCATGGGGTGGTCGGGAGCGTCCCTCGAWAAATGAATCTCCAGTGACCAAATCAAATGGTGGGCGAGTGTTATCTCCTCCGAACAGCGGTCTATCAGATGAAAGTCCATGTGGTGGTCTAGAGCGTCCCTGAAATAGTTAGGATAAAGATTGTCGACGAAATTGAAAAAAAAAAACTCACCTCAAAAGATGTCTCTCCAGTGACAAATTTAAATGGTGGACGGGTATTATCACCTCCGAATGGTGGTTGATCAGATGAGAGTCCTTGTTGGGGATGGGAGCGTCCCTGGAATAATTAAGATACTGCTTGCCAATTAAATTGCAAAAAAACTCACTTTGAAAGATGGCTCTCCAGTGACAAATTCAAATGGTGGACGGGTGTTATCACCTCCAAATGGTGGGCGAGAGCGTCCCTCGAAAAGCGGCTCCCCAGTTGCAAAATTAAATGGTGGGCGAGTGTTATCCTGTAGAATCATTGATTGACTTTGTTATCTGACTGTTATGTTCAAAAAACTTACTACTCCGAATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATAGGAGCTTTTTCGTGCT</pcr_primer_p1>
		<pcr_primer_p2>AATTTCGTCGACAATCTTTATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATATAGGAGCTTTTTCGTGCTCATTTAATTGCTGTCAGTGGTTGCCTCAAAGACTCCTCCGAATGACGGTTGATCAGAGGAAAGTCCATGGGGTGGTCGGGAGCGTCCCTCGATAAATGAATCTCCAGTGACCAAATCAAATGGTGGGCGAGTGTTATCTCCTCCGAACAGCGGTCTATCAGATGAAAGTCCATGTGGTGGTCTAGAGCGTCCCTGAAATAGTTAGGATAAAGATTGTCGACGAAATT</canonical_amplicon>
		<polymorphic_amplicon>ATATAGGAGCTTTTTCGTGCTCATTTAATTGCTGTCAGTGGTTGCCTCAAAGACTCCTCCGAATGACGGTTGATCAGAGGAAAGTCCATGGGGTGGTCGGGAGCGTCCCTCGAWAAATGAATCTCCAGTGACCAAATCAAATGGTGGGCGAGTGTTATCTCCTCCGAACAGCGGTCTATCAGATGAAAGTCCATGTGGTGGTCTAGAGCGTCCCTGAAATAGTTAGGATAAAGATTGTCGACGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17787</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>70805</contig_pos>
        <strand></strand>
        <context>TGTGGTGGTC[T/G]AGAGCGTCCC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GTTATCTCCTCCGAACAGCGGTCTATCAGATGAAAGTCCATGTGGTGGTC</left_flank>
        <right_flank>AGAGCGTCCCTGAAATAGTTAGGATAAAGATTGTCGACGAAATTGAAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCTCAGTCGGTAGCGGCGCAGCACCTTCAATACTCGTCCCACAAGTTCAACCCCTCGAGCGTTTTTATGCTCCCCCCCCCCTCTCTTTAAAAAAATCAATACAATTTCGCTTTGCTTCTTCCTACTGTTTTTTTTCCTAATTCTAAATATTTCTTATCTTTTCTTAAGTTCTATTTCTGTACTTTTTTCAATGACTAACACAGTGTTGCAAACATAAATATTTATACATAGATTCAAAATAATTTACAAATTTACATGTTGACAATAGAATGTACAAAAACATTTAGAGAAAGTCATATAGGAGCTTTTTCGTGCTCATTTAATTGCTGTCAGTGGTTGCCTCAAAGACTCCTCCGAATGACGGTTGATCAGAGGAAAGTCCATGGGGTGGTCGGGAGCGTCCCTCGATAAATGAATCTCCAGTGACCAAATCAAATGGTGGGCGAGTGTTATCTCCTCCGAACAGCGGTCTATCAGATGAAAGTCCATGTGGTGGTCTAGAGCGTCCCTGAAATAGTTAGGATAAAGATTGTCGACGAAATTGAAAAAAAAAAACTCACCTCAAAAGATGTCTCTCCAGTGACAAATTTAAATGGTGGACGGGTATTATCACCTCCGAATGGTGGTTGATCAGATGAGAGTCCTTGTTGGGGATGGGAGCGTCCCTGGAATAATTAAGATACTGCTTGCCAATTAAATTGCAAAAAAACTCACTTTGAAAGATGGCTCTCCAGTGACAAATTCAAATGGTGGACGGGTGTTATCACCTCCAAATGGTGGGCGAGAGCGTCCCTCGAAAAGCGGCTCCCCAGTTGCAAAATTAAATGGTGGGCGAGTGTTATCCTGTAGAATCATTGATTGACTTTGTTATCTGACTGTTATGTTCAAAAAACTTACTACTCCGAATGGCGGTTGATCAGATGAGAATCCTAGTGGTGGTCGGGAGCGTCCCTGGAATAATTAAGATAAGGATTGCCGATTAAATTGAGAAAACTCACT</canonical>
            <polymorphic>GGCTCAGTCGGTAGCGGCGCAGCACCTTCAATACTCGTCCCACAAGTTCAACCCCTCGAGCGTTTTTATGCTCCCCCCCCCCTCTCTTTAAAAAAATCAATACAATTTCGCTTTGCTTCTTCCTACTGTTTTTTTTCCTAATTCTAAATATTTCTTATCTTTTCTTAAGTTCTATTTCTGTACTTTTTTCAATGACTAACACAGTGTTGCAAACATAAATATTTATACATAGATTCAAAATAATTTACAAATTTACATGTTGACAATAGAATGTACAAAAACATTTAGAGAAAGTCATATAGGAGCTTTTTCGTGCTCATTTAATTGCTGTCAGTGGTTGCCTCAAAGACTCCTCCGAATGACGGTTGATCAGAGGAAAGTCCATGGGGTGGTCGGGAGCGTCCCTCGATAAATGAATCTCCAGTGACCAAATCAAATGGTGGGCGAGTGTTATCTCCTCCGAACAGCGGTCTATCAGATGAAAGTCCATGTGGTGGTCKAGAGCGTCCCTGAAATAGTTAGGATAAAGATTGTCGACGAAATTGAAAAAAAAAAACTCACCTCAAAAGATGTCTCTCCAGTGACAAATTTAAATGGTGGACGGGTATTATCACCTCCGAATGGTGGTTGATCAGATGAGAGTCCTTGTTGGGGATGGGAGCGTCCCTGGAATAATTAAGATACTGCTTGCCAATTAAATTGCAAAAAAACTCACTTTGAAAGATGGCTCTCCAGTGACAAATTCAAATGGTGGACGGGTGTTATCACCTCCAAATGGTGGGCGAGAGCGTCCCTCGAAAAGCGGCTCCCCAGTTGCAAAATTAAATGGTGGGCGAGTGTTATCCTGTAGAATCATTGATTGACTTTGTTATCTGACTGTTATGTTCAAAAAACTTACTACTCCGAATGGCGGTTGATCAGATGAGAATCCTAGTGGTGGTCGGGAGCGTCCCTGGAATAATTAAGATAAGGATTGCCGATTAAATTGAGAAAACTCACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 432 69</canonical_bands>
                <polymorphic_bands>931 69</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTGTTATCTCCTCCGAACAG</pcr_primer_p1>
		<pcr_primer_p2>TAATTGGCAAGCAGTATCTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGTGTTATCTCCTCCGAACAGCGGTCTATCAGATGAAAGTCCATGTGGTGGTCTAGAGCGTCCCTGAAATAGTTAGGATAAAGATTGTCGACGAAATTGAAAAAAAAAAACTCACCTCAAAAGATGTCTCTCCAGTGACAAATTTAAATGGTGGACGGGTATTATCACCTCCGAATGGTGGTTGATCAGATGAGAGTCCTTGTTGGGGATGGGAGCGTCCCTGGAATAATTAAGATACTGCTTGCCAATTA</canonical_amplicon>
		<polymorphic_amplicon>AGTGTTATCTCCTCCGAACAGCGGTCTATCAGATGAAAGTCCATGTGGTGGTCKAGAGCGTCCCTGAAATAGTTAGGATAAAGATTGTCGACGAAATTGAAAAAAAAAAACTCACCTCAAAAGATGTCTCTCCAGTGACAAATTTAAATGGTGGACGGGTATTATCACCTCCGAATGGTGGTTGATCAGATGAGAGTCCTTGTTGGGGATGGGAGCGTCCCTGGAATAATTAAGATACTGCTTGCCAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17788</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>70882</contig_pos>
        <strand></strand>
        <context>AAGATGTCTC[T/G]CCAGTGACAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AAGATTGTCGACGAAATTGAAAAAAAAAAACTCACCTCAAAAGATGTCTC</left_flank>
        <right_flank>CCAGTGACAAATTTAAATGGTGGACGGGTATTATCACCTCCGAATGGTGG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCCCTCTCTTTAAAAAAATCAATACAATTTCGCTTTGCTTCTTCCTACTGTTTTTTTTCCTAATTCTAAATATTTCTTATCTTTTCTTAAGTTCTATTTCTGTACTTTTTTCAATGACTAACACAGTGTTGCAAACATAAATATTTATACATAGATTCAAAATAATTTACAAATTTACATGTTGACAATAGAATGTACAAAAACATTTAGAGAAAGTCATATAGGAGCTTTTTCGTGCTCATTTAATTGCTGTCAGTGGTTGCCTCAAAGACTCCTCCGAATGACGGTTGATCAGAGGAAAGTCCATGGGGTGGTCGGGAGCGTCCCTCGATAAATGAATCTCCAGTGACCAAATCAAATGGTGGGCGAGTGTTATCTCCTCCGAACAGCGGTCTATCAGATGAAAGTCCATGTGGTGGTCTAGAGCGTCCCTGAAATAGTTAGGATAAAGATTGTCGACGAAATTGAAAAAAAAAAACTCACCTCAAAAGATGTCTCTCCAGTGACAAATTTAAATGGTGGACGGGTATTATCACCTCCGAATGGTGGTTGATCAGATGAGAGTCCTTGTTGGGGATGGGAGCGTCCCTGGAATAATTAAGATACTGCTTGCCAATTAAATTGCAAAAAAACTCACTTTGAAAGATGGCTCTCCAGTGACAAATTCAAATGGTGGACGGGTGTTATCACCTCCAAATGGTGGGCGAGAGCGTCCCTCGAAAAGCGGCTCCCCAGTTGCAAAATTAAATGGTGGGCGAGTGTTATCCTGTAGAATCATTGATTGACTTTGTTATCTGACTGTTATGTTCAAAAAACTTACTACTCCGAATGGCGGTTGATCAGATGAGAATCCTAGTGGTGGTCGGGAGCGTCCCTGGAATAATTAAGATAAGGATTGCCGATTAAATTGAGAAAACTCACTTCGAAACCTGGCTCACCGGTGACAAACTCAAATGGTGGGCGAGTGTTATCTCCTCCGAATGGTGGTTGATCAGATGA</canonical>
            <polymorphic>CCCCCTCTCTTTAAAAAAATCAATACAATTTCGCTTTGCTTCTTCCTACTGTTTTTTTTCCTAATTCTAAATATTTCTTATCTTTTCTTAAGTTCTATTTCTGTACTTTTTTCAATGACTAACACAGTGTTGCAAACATAAATATTTATACATAGATTCAAAATAATTTACAAATTTACATGTTGACAATAGAATGTACAAAAACATTTAGAGAAAGTCATATAGGAGCTTTTTCGTGCTCATTTAATTGCTGTCAGTGGTTGCCTCAAAGACTCCTCCGAATGACGGTTGATCAGAGGAAAGTCCATGGGGTGGTCGGGAGCGTCCCTCGATAAATGAATCTCCAGTGACCAAATCAAATGGTGGGCGAGTGTTATCTCCTCCGAACAGCGGTCTATCAGATGAAAGTCCATGTGGTGGTCTAGAGCGTCCCTGAAATAGTTAGGATAAAGATTGTCGACGAAATTGAAAAAAAAAAACTCACCTCAAAAGATGTCTCKCCAGTGACAAATTTAAATGGTGGACGGGTATTATCACCTCCGAATGGTGGTTGATCAGATGAGAGTCCTTGTTGGGGATGGGAGCGTCCCTGGAATAATTAAGATACTGCTTGCCAATTAAATTGCAAAAAAACTCACTTTGAAAGATGGCTCTCCAGTGACAAATTCAAATGGTGGACGGGTGTTATCACCTCCAAATGGTGGGCGAGAGCGTCCCTCGAAAAGCGGCTCCCCAGTTGCAAAATTAAATGGTGGGCGAGTGTTATCCTGTAGAATCATTGATTGACTTTGTTATCTGACTGTTATGTTCAAAAAACTTACTACTCCGAATGGCGGTTGATCAGATGAGAATCCTAGTGGTGGTCGGGAGCGTCCCTGGAATAATTAAGATAAGGATTGCCGATTAAATTGAGAAAACTCACTTCGAAACCTGGCTCACCGGTGACAAACTCAAATGGTGGGCGAGTGTTATCTCCTCCGAATGGTGGTTGATCAGATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGTTATCTCCTCCGAACAG</pcr_primer_p1>
		<pcr_primer_p2>TAATTGGCAAGCAGTATCTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGTGTTATCTCCTCCGAACAGCGGTCTATCAGATGAAAGTCCATGTGGTGGTCTAGAGCGTCCCTGAAATAGTTAGGATAAAGATTGTCGACGAAATTGAAAAAAAAAAACTCACCTCAAAAGATGTCTCTCCAGTGACAAATTTAAATGGTGGACGGGTATTATCACCTCCGAATGGTGGTTGATCAGATGAGAGTCCTTGTTGGGGATGGGAGCGTCCCTGGAATAATTAAGATACTGCTTGCCAATTA</canonical_amplicon>
		<polymorphic_amplicon>AGTGTTATCTCCTCCGAACAGCGGTCTATCAGATGAAAGTCCATGTGGTGGTCTAGAGCGTCCCTGAAATAGTTAGGATAAAGATTGTCGACGAAATTGAAAAAAAAAAACTCACCTCAAAAGATGTCTCKCCAGTGACAAATTTAAATGGTGGACGGGTATTATCACCTCCGAATGGTGGTTGATCAGATGAGAGTCCTTGTTGGGGATGGGAGCGTCCCTGGAATAATTAAGATACTGCTTGCCAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17791</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>147701</contig_pos>
        <strand>+</strand>
        <context>AATAGTAGCT[A/T]ACCAAACACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAATGACTTTGAAGTAATTTCCATCGTAAGAAAGGATCTAATAGTAGCT</left_flank>
        <right_flank>ACCAAACACGTGTAGTTTGAGTTCAATTATCTCGGTTCCTTCAAGAGCTA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAAAAAGGAAGAAGAAACAGAATAAAAGACGAAGACGTGAAAAAGAGAACACGAGGAAAGAAGAAGGACTAGACCCAGAACGTTCCAGCGTTTTCCAATTTTCCCACTCGTGCTCCTGGTGTCTCAAGAGAGAAAAAGGCTTTCAAAATGAGAATGTATTGATTCCATGAAACTTTGTTCTTCCTCAAATCAATCTTGACCGGTCATCTTTACTATAAAAGAAGTTATTTTTCAGATACGAGTAGAGTCACGGGGACCCCAATCACACATAATGGATCAATCGTTCCCGTCCTACGTGAACATTCCGCCAATAGCCAAAAGTGAGTATTTACTGCAAATCGTTGACAGGAAAAACTGAAAAGAAACTGTCTGAAAAAAATATTATCTTCAAATATGATATGATCTCTTTAGCTAAACTACGGTACGCTCAAAAAAGTTTTATTCAAAAGAATGACTTTGAAGTAATTTCCATCGTAAGAAAGGATCTAATAGTAGCTAACCAAACACGTGTAGTTTGAGTTCAATTATCTCGGTTCCTTCAAGAGCTATCAAAAAGTGTCAACTGATAAAAGGTTGATCATAATATTACCAACATTTTATCAGTTTACAAAATTTTTATATCTTTGATGTTAATCGAGATAATTGAGCTCAAAGTGCACGCATATGGTGGGCTTTATCGTATAGAGCGGGTTTCAGCACTTACGGTATATCGGGATTTCTAGATTCTCCAGGTCTTCTGTTTGGATTACTGAACCAATTATGAAAAGCAGGCACCTGGTCCGAGTCCAAAAGAAGAGTCACTCTGAAATCGTTTATTCTGTAATTTATTTTCTTGCCGACTTATTTTGAAAATCTTTGATCTTTTTTCTAGAAACTACTCCTTATCTAACATCAAATTCAGATTAATGTGTAACTGTAAATATCCAGAAAAATAGTATTTTTTAACTGAAAAAATGTTGTTGTTTATATCAAACTTCTACGTCAGTCCCTGCCGAAAA</canonical>
            <polymorphic>ATAAAAAAGGAAGAAGAAACAGAATAAAAGACGAAGACGTGAAAAAGAGAACACGAGGAAAGAAGAAGGACTAGACCCAGAACGTTCCAGCGTTTTCCAATTTTCCCACTCGTGCTCCTGGTGTCTCAAGAGAGAAAAAGGCTTTCAAAATGAGAATGTATTGATTCCATGAAACTTTGTTCTTCCTCAAATCAATCTTGACCGGTCATCTTTACTATAAAAGAAGTTATTTTTCAGATACGAGTAGAGTCACGGGGACCCCAATCACACATAATGGATCAATCGTTCCCGTCCTACGTGAACATTCCGCCAATAGCCAAAAGTGAGTATTTACTGCAAATCGTTGACAGGAAAAACTGAAAAGAAACTGTCTGAAAAAAATATTATCTTCAAATATGATATGATCTCTTTAGCTAAACTACGGTACGCTCAAAAAAGTTTTATTCAAAAGAATGACTTTGAAGTAATTTCCATCGTAAGAAAGGATCTAATAGTAGCTWACCAAACACGTGTAGTTTGAGTTCAATTATCTCGGTTCCTTCAAGAGCTATCAAAAAGTGTCAACTGATAAAAGGTTGATCATAATATTACCAACATTTTATCAGTTTACAAAATTTTTATATCTTTGATGTTAATCGAGATAATTGAGCTCAAAGTGCACGCATATGGTGGGCTTTATCGTATAGAGCGGGTTTCAGCACTTACGGTATATCGGGATTTCTAGATTCTCCAGGTCTTCTGTTTGGATTACTGAACCAATTATGAAAAGCAGGCACCTGGTCCGAGTCCAAAAGAAGAGTCACTCTGAAATCGTTTATTCTGTAATTTATTTTCTTGCCGACTTATTTTGAAAATCTTTGATCTTTTTTCTAGAAACTACTCCTTATCTAACATCAAATTCAGATTAATGTGTAACTGTAAATATCCAGAAAAATAGTATTTTTTAACTGAAAAAATGTTGTTGTTTATATCAAACTTCTACGTCAGTCCCTGCCGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGTTTTATTCAAAAGAATGAC</pcr_primer_p1>
		<pcr_primer_p2>CGATATACCGTAAGTGCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>282</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGTTTTATTCAAAAGAATGACTTTGAAGTAATTTCCATCGTAAGAAAGGATCTAATAGTAGCTAACCAAACACGTGTAGTTTGAGTTCAATTATCTCGGTTCCTTCAAGAGCTATCAAAAAGTGTCAACTGATAAAAGGTTGATCATAATATTACCAACATTTTATCAGTTTACAAAATTTTTATATCTTTGATGTTAATCGAGATAATTGAGCTCAAAGTGCACGCATATGGTGGGCTTTATCGTATAGAGCGGGTTTCAGCACTTACGGTATATCG</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGTTTTATTCAAAAGAATGACTTTGAAGTAATTTCCATCGTAAGAAAGGATCTAATAGTAGCTWACCAAACACGTGTAGTTTGAGTTCAATTATCTCGGTTCCTTCAAGAGCTATCAAAAAGTGTCAACTGATAAAAGGTTGATCATAATATTACCAACATTTTATCAGTTTACAAAATTTTTATATCTTTGATGTTAATCGAGATAATTGAGCTCAAAGTGCACGCATATGGTGGGCTTTATCGTATAGAGCGGGTTTCAGCACTTACGGTATATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17792</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>147867</contig_pos>
        <strand>+</strand>
        <context>gtGCACGCAT[A/G]TGGTGGGCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTATATCTTTGATGTTAATCGAGATAATTGAGCTCAAAGTGCACGCAT</left_flank>
        <right_flank>TGGTGGGCTTTATCGTATAGAGCGGGTTTCAGCACTTACGGTATATCGGG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCATGAAACTTTGTTCTTCCTCAAATCAATCTTGACCGGTCATCTTTACTATAAAAGAAGTTATTTTTCAGATACGAGTAGAGTCACGGGGACCCCAATCACACATAATGGATCAATCGTTCCCGTCCTACGTGAACATTCCGCCAATAGCCAAAAGTGAGTATTTACTGCAAATCGTTGACAGGAAAAACTGAAAAGAAACTGTCTGAAAAAAATATTATCTTCAAATATGATATGATCTCTTTAGCTAAACTACGGTACGCTCAAAAAAGTTTTATTCAAAAGAATGACTTTGAAGTAATTTCCATCGTAAGAAAGGATCTAATAGTAGCTAACCAAACACGTGTAGTTTGAGTTCAATTATCTCGGTTCCTTCAAGAGCTATCAAAAAGTGTCAACTGATAAAAGGTTGATCATAATATTACCAACATTTTATCAGTTTACAAAATTTTTATATCTTTGATGTTAATCGAGATAATTGAGCTCAAAGTGCACGCATATGGTGGGCTTTATCGTATAGAGCGGGTTTCAGCACTTACGGTATATCGGGATTTCTAGATTCTCCAGGTCTTCTGTTTGGATTACTGAACCAATTATGAAAAGCAGGCACCTGGTCCGAGTCCAAAAGAAGAGTCACTCTGAAATCGTTTATTCTGTAATTTATTTTCTTGCCGACTTATTTTGAAAATCTTTGATCTTTTTTCTAGAAACTACTCCTTATCTAACATCAAATTCAGATTAATGTGTAACTGTAAATATCCAGAAAAATAGTATTTTTTAACTGAAAAAATGTTGTTGTTTATATCAAACTTCTACGTCAGTCCCTGCCGAAAATCGTTTAGAATTAGATTCAGATTACCTAGAACACCGACCCACGCTCTCAAAAATTGAACCGGATATCAAATCAACAGCTCTATAGATAATTGAACATTTTGCAGCACGAAGCACTAGCCACCTGGCTCCAACTCCTGAACACCACCGATCCGTCAGCTACGAGGAG</canonical>
            <polymorphic>CCATGAAACTTTGTTCTTCCTCAAATCAATCTTGACCGGTCATCTTTACTATAAAAGAAGTTATTTTTCAGATACGAGTAGAGTCACGGGGACCCCAATCACACATAATGGATCAATCGTTCCCGTCCTACGTGAACATTCCGCCAATAGCCAAAAGTGAGTATTTACTGCAAATCGTTGACAGGAAAAACTGAAAAGAAACTGTCTGAAAAAAATATTATCTTCAAATATGATATGATCTCTTTAGCTAAACTACGGTACGCTCAAAAAAGTTTTATTCAAAAGAATGACTTTGAAGTAATTTCCATCGTAAGAAAGGATCTAATAGTAGCTAACCAAACACGTGTAGTTTGAGTTCAATTATCTCGGTTCCTTCAAGAGCTATCAAAAAGTGTCAACTGATAAAAGGTTGATCATAATATTACCAACATTTTATCAGTTTACAAAATTTTTATATCTTTGATGTTAATCGAGATAATTGAGCTCAAAGTGCACGCATRTGGTGGGCTTTATCGTATAGAGCGGGTTTCAGCACTTACGGTATATCGGGATTTCTAGATTCTCCAGGTCTTCTGTTTGGATTACTGAACCAATTATGAAAAGCAGGCACCTGGTCCGAGTCCAAAAGAAGAGTCACTCTGAAATCGTTTATTCTGTAATTTATTTTCTTGCCGACTTATTTTGAAAATCTTTGATCTTTTTTCTAGAAACTACTCCTTATCTAACATCAAATTCAGATTAATGTGTAACTGTAAATATCCAGAAAAATAGTATTTTTTAACTGAAAAAATGTTGTTGTTTATATCAAACTTCTACGTCAGTCCCTGCCGAAAATCGTTTAGAATTAGATTCAGATTACCTAGAACACCGACCCACGCTCTCAAAAATTGAACCGGATATCAAATCAACAGCTCTATAGATAATTGAACATTTTGCAGCACGAAGCACTAGCCACCTGGCTCCAACTCCTGAACACCACCGATCCGTCAGCTACGAGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATATG</site>
                <isoschizomers>
                    <enzyme>FauNDI</enzyme>
                    <enzyme>NdeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCATCGTAAGAAAGGATCTAAT</pcr_primer_p1>
		<pcr_primer_p2>AATCCCGATATACCGTAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCATCGTAAGAAAGGATCTAATAGTAGCTAACCAAACACGTGTAGTTTGAGTTCAATTATCTCGGTTCCTTCAAGAGCTATCAAAAAGTGTCAACTGATAAAAGGTTGATCATAATATTACCAACATTTTATCAGTTTACAAAATTTTTATATCTTTGATGTTAATCGAGATAATTGAGCTCAAAGTGCACGCATATGGTGGGCTTTATCGTATAGAGCGGGTTTCAGCACTTACGGTATATCGGGATT</canonical_amplicon>
		<polymorphic_amplicon>TCCATCGTAAGAAAGGATCTAATAGTAGCTAACCAAACACGTGTAGTTTGAGTTCAATTATCTCGGTTCCTTCAAGAGCTATCAAAAAGTGTCAACTGATAAAAGGTTGATCATAATATTACCAACATTTTATCAGTTTACAAAATTTTTATATCTTTGATGTTAATCGAGATAATTGAGCTCAAAGTGCACGCATRTGGTGGGCTTTATCGTATAGAGCGGGTTTCAGCACTTACGGTATATCGGGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17793</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>147888</contig_pos>
        <strand>+</strand>
        <context>TATCGTATAG[A/G]GCGGGTTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAGATAATTGAGCTCAAAGTGCACGCATATGGTGGGCTTTATCGTATAG</left_flank>
        <right_flank>GCGGGTTTCAGCACTTACGGTATATCGGGATTTCTAGATTCTCCAGGTCT</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATCAATCTTGACCGGTCATCTTTACTATAAAAGAAGTTATTTTTCAGATACGAGTAGAGTCACGGGGACCCCAATCACACATAATGGATCAATCGTTCCCGTCCTACGTGAACATTCCGCCAATAGCCAAAAGTGAGTATTTACTGCAAATCGTTGACAGGAAAAACTGAAAAGAAACTGTCTGAAAAAAATATTATCTTCAAATATGATATGATCTCTTTAGCTAAACTACGGTACGCTCAAAAAAGTTTTATTCAAAAGAATGACTTTGAAGTAATTTCCATCGTAAGAAAGGATCTAATAGTAGCTAACCAAACACGTGTAGTTTGAGTTCAATTATCTCGGTTCCTTCAAGAGCTATCAAAAAGTGTCAACTGATAAAAGGTTGATCATAATATTACCAACATTTTATCAGTTTACAAAATTTTTATATCTTTGATGTTAATCGAGATAATTGAGCTCAAAGTGCACGCATATGGTGGGCTTTATCGTATAGAGCGGGTTTCAGCACTTACGGTATATCGGGATTTCTAGATTCTCCAGGTCTTCTGTTTGGATTACTGAACCAATTATGAAAAGCAGGCACCTGGTCCGAGTCCAAAAGAAGAGTCACTCTGAAATCGTTTATTCTGTAATTTATTTTCTTGCCGACTTATTTTGAAAATCTTTGATCTTTTTTCTAGAAACTACTCCTTATCTAACATCAAATTCAGATTAATGTGTAACTGTAAATATCCAGAAAAATAGTATTTTTTAACTGAAAAAATGTTGTTGTTTATATCAAACTTCTACGTCAGTCCCTGCCGAAAATCGTTTAGAATTAGATTCAGATTACCTAGAACACCGACCCACGCTCTCAAAAATTGAACCGGATATCAAATCAACAGCTCTATAGATAATTGAACATTTTGCAGCACGAAGCACTAGCCACCTGGCTCCAACTCCTGAACACCACCGATCCGTCAGCTACGAGGAGACAACGACAGCATCTACAAGT</canonical>
            <polymorphic>CAAATCAATCTTGACCGGTCATCTTTACTATAAAAGAAGTTATTTTTCAGATACGAGTAGAGTCACGGGGACCCCAATCACACATAATGGATCAATCGTTCCCGTCCTACGTGAACATTCCGCCAATAGCCAAAAGTGAGTATTTACTGCAAATCGTTGACAGGAAAAACTGAAAAGAAACTGTCTGAAAAAAATATTATCTTCAAATATGATATGATCTCTTTAGCTAAACTACGGTACGCTCAAAAAAGTTTTATTCAAAAGAATGACTTTGAAGTAATTTCCATCGTAAGAAAGGATCTAATAGTAGCTAACCAAACACGTGTAGTTTGAGTTCAATTATCTCGGTTCCTTCAAGAGCTATCAAAAAGTGTCAACTGATAAAAGGTTGATCATAATATTACCAACATTTTATCAGTTTACAAAATTTTTATATCTTTGATGTTAATCGAGATAATTGAGCTCAAAGTGCACGCATATGGTGGGCTTTATCGTATAGRGCGGGTTTCAGCACTTACGGTATATCGGGATTTCTAGATTCTCCAGGTCTTCTGTTTGGATTACTGAACCAATTATGAAAAGCAGGCACCTGGTCCGAGTCCAAAAGAAGAGTCACTCTGAAATCGTTTATTCTGTAATTTATTTTCTTGCCGACTTATTTTGAAAATCTTTGATCTTTTTTCTAGAAACTACTCCTTATCTAACATCAAATTCAGATTAATGTGTAACTGTAAATATCCAGAAAAATAGTATTTTTTAACTGAAAAAATGTTGTTGTTTATATCAAACTTCTACGTCAGTCCCTGCCGAAAATCGTTTAGAATTAGATTCAGATTACCTAGAACACCGACCCACGCTCTCAAAAATTGAACCGGATATCAAATCAACAGCTCTATAGATAATTGAACATTTTGCAGCACGAAGCACTAGCCACCTGGCTCCAACTCCTGAACACCACCGATCCGTCAGCTACGAGGAGACAACGACAGCATCTACAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATCGTAAGAAAGGATCTAATA</pcr_primer_p1>
		<pcr_primer_p2>AATTGGTTCAGTAATCCAAACA</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>CCATCGTAAGAAAGGATCTAATAGTAGCTAACCAAACACGTGTAGTTTGAGTTCAATTATCTCGGTTCCTTCAAGAGCTATCAAAAAGTGTCAACTGATAAAAGGTTGATCATAATATTACCAACATTTTATCAGTTTACAAAATTTTTATATCTTTGATGTTAATCGAGATAATTGAGCTCAAAGTGCACGCATATGGTGGGCTTTATCGTATAGAGCGGGTTTCAGCACTTACGGTATATCGGGATTTCTAGATTCTCCAGGTCTTCTGTTTGGATTACTGAACCAATT</canonical_amplicon>
		<polymorphic_amplicon>CCATCGTAAGAAAGGATCTAATAGTAGCTAACCAAACACGTGTAGTTTGAGTTCAATTATCTCGGTTCCTTCAAGAGCTATCAAAAAGTGTCAACTGATAAAAGGTTGATCATAATATTACCAACATTTTATCAGTTTACAAAATTTTTATATCTTTGATGTTAATCGAGATAATTGAGCTCAAAGTGCACGCATATGGTGGGCTTTATCGTATAGRGCGGGTTTCAGCACTTACGGTATATCGGGATTTCTAGATTCTCCAGGTCTTCTGTTTGGATTACTGAACCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17794</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>147940</contig_pos>
        <strand>+</strand>
        <context>TCCAGGTCTT[C/T]TGTTTGGATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGGTTTCAGCACTTACGGTATATCGGGATTTCTAGATTCTCCAGGTCTT</left_flank>
        <right_flank>TGTTTGGATTACTGAACCAATTATGAAAAGCAGGCACCTGGTCCGAGTCC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGAGTAGAGTCACGGGGACCCCAATCACACATAATGGATCAATCGTTCCCGTCCTACGTGAACATTCCGCCAATAGCCAAAAGTGAGTATTTACTGCAAATCGTTGACAGGAAAAACTGAAAAGAAACTGTCTGAAAAAAATATTATCTTCAAATATGATATGATCTCTTTAGCTAAACTACGGTACGCTCAAAAAAGTTTTATTCAAAAGAATGACTTTGAAGTAATTTCCATCGTAAGAAAGGATCTAATAGTAGCTAACCAAACACGTGTAGTTTGAGTTCAATTATCTCGGTTCCTTCAAGAGCTATCAAAAAGTGTCAACTGATAAAAGGTTGATCATAATATTACCAACATTTTATCAGTTTACAAAATTTTTATATCTTTGATGTTAATCGAGATAATTGAGCTCAAAGTGCACGCATATGGTGGGCTTTATCGTATAGAGCGGGTTTCAGCACTTACGGTATATCGGGATTTCTAGATTCTCCAGGTCTTCTGTTTGGATTACTGAACCAATTATGAAAAGCAGGCACCTGGTCCGAGTCCAAAAGAAGAGTCACTCTGAAATCGTTTATTCTGTAATTTATTTTCTTGCCGACTTATTTTGAAAATCTTTGATCTTTTTTCTAGAAACTACTCCTTATCTAACATCAAATTCAGATTAATGTGTAACTGTAAATATCCAGAAAAATAGTATTTTTTAACTGAAAAAATGTTGTTGTTTATATCAAACTTCTACGTCAGTCCCTGCCGAAAATCGTTTAGAATTAGATTCAGATTACCTAGAACACCGACCCACGCTCTCAAAAATTGAACCGGATATCAAATCAACAGCTCTATAGATAATTGAACATTTTGCAGCACGAAGCACTAGCCACCTGGCTCCAACTCCTGAACACCACCGATCCGTCAGCTACGAGGAGACAACGACAGCATCTACAAGTACAGATTCCGTCCCTTCTGTTCGGATCAGATCCGAAAGTTCACAGATCTCGT</canonical>
            <polymorphic>ACGAGTAGAGTCACGGGGACCCCAATCACACATAATGGATCAATCGTTCCCGTCCTACGTGAACATTCCGCCAATAGCCAAAAGTGAGTATTTACTGCAAATCGTTGACAGGAAAAACTGAAAAGAAACTGTCTGAAAAAAATATTATCTTCAAATATGATATGATCTCTTTAGCTAAACTACGGTACGCTCAAAAAAGTTTTATTCAAAAGAATGACTTTGAAGTAATTTCCATCGTAAGAAAGGATCTAATAGTAGCTAACCAAACACGTGTAGTTTGAGTTCAATTATCTCGGTTCCTTCAAGAGCTATCAAAAAGTGTCAACTGATAAAAGGTTGATCATAATATTACCAACATTTTATCAGTTTACAAAATTTTTATATCTTTGATGTTAATCGAGATAATTGAGCTCAAAGTGCACGCATATGGTGGGCTTTATCGTATAGAGCGGGTTTCAGCACTTACGGTATATCGGGATTTCTAGATTCTCCAGGTCTTYTGTTTGGATTACTGAACCAATTATGAAAAGCAGGCACCTGGTCCGAGTCCAAAAGAAGAGTCACTCTGAAATCGTTTATTCTGTAATTTATTTTCTTGCCGACTTATTTTGAAAATCTTTGATCTTTTTTCTAGAAACTACTCCTTATCTAACATCAAATTCAGATTAATGTGTAACTGTAAATATCCAGAAAAATAGTATTTTTTAACTGAAAAAATGTTGTTGTTTATATCAAACTTCTACGTCAGTCCCTGCCGAAAATCGTTTAGAATTAGATTCAGATTACCTAGAACACCGACCCACGCTCTCAAAAATTGAACCGGATATCAAATCAACAGCTCTATAGATAATTGAACATTTTGCAGCACGAAGCACTAGCCACCTGGCTCCAACTCCTGAACACCACCGATCCGTCAGCTACGAGGAGACAACGACAGCATCTACAAGTACAGATTCCGTCCCTTCTGTTCGGATCAGATCCGAAAGTTCACAGATCTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATCGTAAGAAAGGATCTAATA</pcr_primer_p1>
		<pcr_primer_p2>GAGTGACTCTTCTTTTGGACTC</pcr_primer_p2>
		<pcr_amplicon_size>335</pcr_amplicon_size>
		<canonical_amplicon>CCATCGTAAGAAAGGATCTAATAGTAGCTAACCAAACACGTGTAGTTTGAGTTCAATTATCTCGGTTCCTTCAAGAGCTATCAAAAAGTGTCAACTGATAAAAGGTTGATCATAATATTACCAACATTTTATCAGTTTACAAAATTTTTATATCTTTGATGTTAATCGAGATAATTGAGCTCAAAGTGCACGCATATGGTGGGCTTTATCGTATAGAGCGGGTTTCAGCACTTACGGTATATCGGGATTTCTAGATTCTCCAGGTCTTCTGTTTGGATTACTGAACCAATTATGAAAAGCAGGCACCTGGTCCGAGTCCAAAAGAAGAGTCACTC</canonical_amplicon>
		<polymorphic_amplicon>CCATCGTAAGAAAGGATCTAATAGTAGCTAACCAAACACGTGTAGTTTGAGTTCAATTATCTCGGTTCCTTCAAGAGCTATCAAAAAGTGTCAACTGATAAAAGGTTGATCATAATATTACCAACATTTTATCAGTTTACAAAATTTTTATATCTTTGATGTTAATCGAGATAATTGAGCTCAAAGTGCACGCATATGGTGGGCTTTATCGTATAGAGCGGGTTTCAGCACTTACGGTATATCGGGATTTCTAGATTCTCCAGGTCTTYTGTTTGGATTACTGAACCAATTATGAAAAGCAGGCACCTGGTCCGAGTCCAAAAGAAGAGTCACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17795</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>151543</contig_pos>
        <strand>+</strand>
        <context>GATTGTGAAC[G/T]TTTTAGTGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCAGGATATGCGGAACTTGTTTGCGAGAAGTAGGTGTTGTGATTGTGAAC</left_flank>
        <right_flank>TTTTAGTGTTAGTGATAAAATTTCGAATGATTTATCGATGATCCCTATTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTATGATAAACAGTTCATCAGTTGACAAATTTTCGATATTTTTCACAGGAGTCAAGATAATTGAGCTCAAAGTTGAAGGGTTGGTTGGACATCTATTGGAGGAAATACAGTTGGAAAAAGTCAATTTGAAACCGTCAATCAAAATATCCTTATTTCAAAATGGATTCTTTTTAATTTTCACCTATTTATTGGTTGATTGATATCGTGTCGTGGTCTGTAGCTCGTGCATTTCAGGGAATGACGAAAACTTCAACGGAGGAACACTTCCACGACTCAACGGTCGTCAATCTTCTTTATCAATGAGTAGTCCAGACCTCTATCAGATACAAGACATAATTAGCGGATCTAATACAGTCGGACCAAGTGCTCACAGAATATCTAGAAAGAATGCGATTCGTCACAAAAAGACACATCCTAACGGGTATGATGCTCATTTGGTCTCTCCCACCCAGGATATGCGGAACTTGTTTGCGAGAAGTAGGTGTTGTGATTGTGAACGTTTTAGTGTTAGTGATAAAATTTCGAATGATTTATCGATGATCCCTATTCTGATCCACGGTTTTTTAGTTGATAACGCCGAAGACGAAGGACGTGCGAAAGAGAAGAAACAAGGAACGCTGTCAAGGGTTTTTGCAAGGGCGCCGTGGAGAAGAGAAAAAAGAGAATCTAAAGAAGAGCATGAGGATCGCGCGGCAGCTGGAAGCATATCAAGCCGATCAAGTTCCACGACTTCCAGCAATCGGATAATAACAGGACAGACGACTCGTGGAGCAGCTGCAATTCCATTCCTGGAAGCTGGAGCCAGATCACGAGCGCAGTCTGCTGCCGATTCTTGGGATGACACTAGTTCGAATAAGTGAGAATTCAGAATGAATCGGGAGAAAAATAATTCTGAAAAATTACAGGAAAAGCAAGACATCACCAACTGCGAAGGGACCAGTGAAGCAGACAAATCTAACAGAGTGAGTCTATTTTTTCCTTGACTCAAATTCCCCCTCA</canonical>
            <polymorphic>TTTATGATAAACAGTTCATCAGTTGACAAATTTTCGATATTTTTCACAGGAGTCAAGATAATTGAGCTCAAAGTTGAAGGGTTGGTTGGACATCTATTGGAGGAAATACAGTTGGAAAAAGTCAATTTGAAACCGTCAATCAAAATATCCTTATTTCAAAATGGATTCTTTTTAATTTTCACCTATTTATTGGTTGATTGATATCGTGTCGTGGTCTGTAGCTCGTGCATTTCAGGGAATGACGAAAACTTCAACGGAGGAACACTTCCACGACTCAACGGTCGTCAATCTTCTTTATCAATGAGTAGTCCAGACCTCTATCAGATACAAGACATAATTAGCGGATCTAATACAGTCGGACCAAGTGCTCACAGAATATCTAGAAAGAATGCGATTCGTCACAAAAAGACACATCCTAACGGGTATGATGCTCATTTGGTCTCTCCCACCCAGGATATGCGGAACTTGTTTGCGAGAAGTAGGTGTTGTGATTGTGAACKTTTTAGTGTTAGTGATAAAATTTCGAATGATTTATCGATGATCCCTATTCTGATCCACGGTTTTTTAGTTGATAACGCCGAAGACGAAGGACGTGCGAAAGAGAAGAAACAAGGAACGCTGTCAAGGGTTTTTGCAAGGGCGCCGTGGAGAAGAGAAAAAAGAGAATCTAAAGAAGAGCATGAGGATCGCGCGGCAGCTGGAAGCATATCAAGCCGATCAAGTTCCACGACTTCCAGCAATCGGATAATAACAGGACAGACGACTCGTGGAGCAGCTGCAATTCCATTCCTGGAAGCTGGAGCCAGATCACGAGCGCAGTCTGCTGCCGATTCTTGGGATGACACTAGTTCGAATAAGTGAGAATTCAGAATGAATCGGGAGAAAAATAATTCTGAAAAATTACAGGAAAAGCAAGACATCACCAACTGCGAAGGGACCAGTGAAGCAGACAAATCTAACAGAGTGAGTCTATTTTTTCCTTGACTCAAATTCCCCCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>498 409 93</canonical_bands>
                <polymorphic_bands>591 409</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGTAGTCCAGACCTCTATCAG</pcr_primer_p1>
		<pcr_primer_p2>GTGGATCAGAATAGGGATCAT</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TGAGTAGTCCAGACCTCTATCAGATACAAGACATAATTAGCGGATCTAATACAGTCGGACCAAGTGCTCACAGAATATCTAGAAAGAATGCGATTCGTCACAAAAAGACACATCCTAACGGGTATGATGCTCATTTGGTCTCTCCCACCCAGGATATGCGGAACTTGTTTGCGAGAAGTAGGTGTTGTGATTGTGAACGTTTTAGTGTTAGTGATAAAATTTCGAATGATTTATCGATGATCCCTATTCTGATCCAC</canonical_amplicon>
		<polymorphic_amplicon>TGAGTAGTCCAGACCTCTATCAGATACAAGACATAATTAGCGGATCTAATACAGTCGGACCAAGTGCTCACAGAATATCTAGAAAGAATGCGATTCGTCACAAAAAGACACATCCTAACGGGTATGATGCTCATTTGGTCTCTCCCACCCAGGATATGCGGAACTTGTTTGCGAGAAGTAGGTGTTGTGATTGTGAACKTTTTAGTGTTAGTGATAAAATTTCGAATGATTTATCGATGATCCCTATTCTGATCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17796</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>151379</contig_pos>
        <strand>+</strand>
        <context>TACAAGACAT[A/C]ATTAGCGGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAATCTTCTTTATCAATGAGTAGTCCAGACCTCTATCAGATACAAGACAT</left_flank>
        <right_flank>ATTAGCGGATCTAATACAGTCGGACCAAGTGCTCACAGAATATCTAGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTATGGAAAAATCAGTTTTGTAACAGTCAATAAAAGAAATCCTTATTTCGAAGTTTCGCACAAACCTGTAATAGAAAGGCCCCACGCTATCAAGTTTGAGCTCGATTTTCTTGACTCCTATGCAAGATATCGAAAATAAATCAATTGATAAAATGTTTGTAATTTTATGATAAACAGTTCATCAGTTGACAAATTTTCGATATTTTTCACAGGAGTCAAGATAATTGAGCTCAAAGTTGAAGGGTTGGTTGGACATCTATTGGAGGAAATACAGTTGGAAAAAGTCAATTTGAAACCGTCAATCAAAATATCCTTATTTCAAAATGGATTCTTTTTAATTTTCACCTATTTATTGGTTGATTGATATCGTGTCGTGGTCTGTAGCTCGTGCATTTCAGGGAATGACGAAAACTTCAACGGAGGAACACTTCCACGACTCAACGGTCGTCAATCTTCTTTATCAATGAGTAGTCCAGACCTCTATCAGATACAAGACATAATTAGCGGATCTAATACAGTCGGACCAAGTGCTCACAGAATATCTAGAAAGAATGCGATTCGTCACAAAAAGACACATCCTAACGGGTATGATGCTCATTTGGTCTCTCCCACCCAGGATATGCGGAACTTGTTTGCGAGAAGTAGGTGTTGTGATTGTGAACGTTTTAGTGTTAGTGATAAAATTTCGAATGATTTATCGATGATCCCTATTCTGATCCACGGTTTTTTAGTTGATAACGCCGAAGACGAAGGACGTGCGAAAGAGAAGAAACAAGGAACGCTGTCAAGGGTTTTTGCAAGGGCGCCGTGGAGAAGAGAAAAAAGAGAATCTAAAGAAGAGCATGAGGATCGCGCGGCAGCTGGAAGCATATCAAGCCGATCAAGTTCCACGACTTCCAGCAATCGGATAATAACAGGACAGACGACTCGTGGAGCAGCTGCAATTCCATTCCTGGAAGCTGGAGCCAGATCACGAGCGCAGTCTGCTGCCGATTCTTG</canonical>
            <polymorphic>GTTATGGAAAAATCAGTTTTGTAACAGTCAATAAAAGAAATCCTTATTTCGAAGTTTCGCACAAACCTGTAATAGAAAGGCCCCACGCTATCAAGTTTGAGCTCGATTTTCTTGACTCCTATGCAAGATATCGAAAATAAATCAATTGATAAAATGTTTGTAATTTTATGATAAACAGTTCATCAGTTGACAAATTTTCGATATTTTTCACAGGAGTCAAGATAATTGAGCTCAAAGTTGAAGGGTTGGTTGGACATCTATTGGAGGAAATACAGTTGGAAAAAGTCAATTTGAAACCGTCAATCAAAATATCCTTATTTCAAAATGGATTCTTTTTAATTTTCACCTATTTATTGGTTGATTGATATCGTGTCGTGGTCTGTAGCTCGTGCATTTCAGGGAATGACGAAAACTTCAACGGAGGAACACTTCCACGACTCAACGGTCGTCAATCTTCTTTATCAATGAGTAGTCCAGACCTCTATCAGATACAAGACATMATTAGCGGATCTAATACAGTCGGACCAAGTGCTCACAGAATATCTAGAAAGAATGCGATTCGTCACAAAAAGACACATCCTAACGGGTATGATGCTCATTTGGTCTCTCCCACCCAGGATATGCGGAACTTGTTTGCGAGAAGTAGGTGTTGTGATTGTGAACGTTTTAGTGTTAGTGATAAAATTTCGAATGATTTATCGATGATCCCTATTCTGATCCACGGTTTTTTAGTTGATAACGCCGAAGACGAAGGACGTGCGAAAGAGAAGAAACAAGGAACGCTGTCAAGGGTTTTTGCAAGGGCGCCGTGGAGAAGAGAAAAAAGAGAATCTAAAGAAGAGCATGAGGATCGCGCGGCAGCTGGAAGCATATCAAGCCGATCAAGTTCCACGACTTCCAGCAATCGGATAATAACAGGACAGACGACTCGTGGAGCAGCTGCAATTCCATTCCTGGAAGCTGGAGCCAGATCACGAGCGCAGTCTGCTGCCGATTCTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>261 183 162 143 64 57 50 31 31 18</canonical_bands>
                <polymorphic_bands>345 261 143 64 57 50 31 31 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCGTCAATCTTCTTTATCAATG</pcr_primer_p1>
		<pcr_primer_p2>TCATTCGAAATTTTATCACTAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCGTCAATCTTCTTTATCAATGAGTAGTCCAGACCTCTATCAGATACAAGACATAATTAGCGGATCTAATACAGTCGGACCAAGTGCTCACAGAATATCTAGAAAGAATGCGATTCGTCACAAAAAGACACATCCTAACGGGTATGATGCTCATTTGGTCTCTCCCACCCAGGATATGCGGAACTTGTTTGCGAGAAGTAGGTGTTGTGATTGTGAACGTTTTAGTGTTAGTGATAAAATTTCGAATGA</canonical_amplicon>
		<polymorphic_amplicon>GTCGTCAATCTTCTTTATCAATGAGTAGTCCAGACCTCTATCAGATACAAGACATMATTAGCGGATCTAATACAGTCGGACCAAGTGCTCACAGAATATCTAGAAAGAATGCGATTCGTCACAAAAAGACACATCCTAACGGGTATGATGCTCATTTGGTCTCTCCCACCCAGGATATGCGGAACTTGTTTGCGAGAAGTAGGTGTTGTGATTGTGAACGTTTTAGTGTTAGTGATAAAATTTCGAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17797</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>173613</contig_pos>
        <strand>+</strand>
        <context>TTGATTTCAG[A/G]TTTTGTTTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATATTGTTTGTGCCTGTTTGAATCAGCTCAGTTTGAAGATTGATTTCAG</left_flank>
        <right_flank>TTTTGTTTTATTTTTTATTGGATGCCTTCGAAAAATCAGGCTTCTGTGGA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAGTCAACTGGTTGATCTGTCCACTGAATTCCTTCCCAACATTAATGCTGTGAAATCGTTGTATAAACAATTGGTTAGTTTTCACTGAAGTTCAAAAGTTAGACGAATGTTCTATGTCTTAATAATTCTTAACTCCTAATTTCAGTTCGACAGTTTCCCACAACTGGAAGCCAACGTCACTGAGACAAAACACTCCATGGAACGTCGGGTTGAGGAAGTCGAGGAGCAACTTCGATGCCGCAATCGTGATTTCCAACGTCTTCAGGAAAAGTTGGTAGCTGAGTGTTGCATCTGTTTGGCGACAAAACCATCCATCGTTTTCATGCCTTGCCGTCATTTGATCACATGTTCCGATTGCTATGATGCCAGCGATTTCCGAGAGTGTCCAACGTGTCGGTCGACTATTGAAAACTCAATTACAGTATTCTTGTAAATCACAATAAAGATTATATTGTTTGTGCCTGTTTGAATCAGCTCAGTTTGAAGATTGATTTCAGGTTTTGTTTTATTTTTTATTGGATGCCTTCGAAAAATCAGGCTTCTGTGGACCGGTTGGAAAATCTATATGGTTTATGGGAATCACGAGAACAGTATACTTTTTTGTTGTTGACCAAGAAAAGAGGAGCGCATATGAATTCTATCTCTCCCGCTTTCAGTTTCTTTCCATCTCTGGAAATAATAAAAAAACGGTTTTGCGAATAATCGATCAGCGATGAAAAGATGCGAACGAAGAAAAAAAAACAATAGAGATGGGGAGAGGAAAAAGAGAAATAAGTATTATCACCCACCCGTGCATTCCATTTTTTCTGTCTTCTCTTCTCTCCCATTTTGAATCTCTTCTCCTTTTCTCTCCCGATGATTTCCCTATCTCTCTAATTTTAACTGTATTTTCATCCCTTGTCAAAACAAATAGAAACGAAAACAATGTGCCATACTCTCTCGTACTATCTACTATCAGTTTCAGATGGTCGACGACGTGTTTCGATTGAAACGGAGTA</canonical>
            <polymorphic>CAAAGTCAACTGGTTGATCTGTCCACTGAATTCCTTCCCAACATTAATGCTGTGAAATCGTTGTATAAACAATTGGTTAGTTTTCACTGAAGTTCAAAAGTTAGACGAATGTTCTATGTCTTAATAATTCTTAACTCCTAATTTCAGTTCGACAGTTTCCCACAACTGGAAGCCAACGTCACTGAGACAAAACACTCCATGGAACGTCGGGTTGAGGAAGTCGAGGAGCAACTTCGATGCCGCAATCGTGATTTCCAACGTCTTCAGGAAAAGTTGGTAGCTGAGTGTTGCATCTGTTTGGCGACAAAACCATCCATCGTTTTCATGCCTTGCCGTCATTTGATCACATGTTCCGATTGCTATGATGCCAGCGATTTCCGAGAGTGTCCAACGTGTCGGTCGACTATTGAAAACTCAATTACAGTATTCTTGTAAATCACAATAAAGATTATATTGTTTGTGCCTGTTTGAATCAGCTCAGTTTGAAGATTGATTTCAGRTTTTGTTTTATTTTTTATTGGATGCCTTCGAAAAATCAGGCTTCTGTGGACCGGTTGGAAAATCTATATGGTTTATGGGAATCACGAGAACAGTATACTTTTTTGTTGTTGACCAAGAAAAGAGGAGCGCATATGAATTCTATCTCTCCCGCTTTCAGTTTCTTTCCATCTCTGGAAATAATAAAAAAACGGTTTTGCGAATAATCGATCAGCGATGAAAAGATGCGAACGAAGAAAAAAAAACAATAGAGATGGGGAGAGGAAAAAGAGAAATAAGTATTATCACCCACCCGTGCATTCCATTTTTTCTGTCTTCTCTTCTCTCCCATTTTGAATCTCTTCTCCTTTTCTCTCCCGATGATTTCCCTATCTCTCTAATTTTAACTGTATTTTCATCCCTTGTCAAAACAAATAGAAACGAAAACAATGTGCCATACTCTCTCGTACTATCTACTATCAGTTTCAGATGGTCGACGACGTGTTTCGATTGAAACGGAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGACTATTGAAAACTCAATTACAG</pcr_primer_p1>
		<pcr_primer_p2>ATAGAATTCATATGCGCTCCT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CGACTATTGAAAACTCAATTACAGTATTCTTGTAAATCACAATAAAGATTATATTGTTTGTGCCTGTTTGAATCAGCTCAGTTTGAAGATTGATTTCAGGTTTTGTTTTATTTTTTATTGGATGCCTTCGAAAAATCAGGCTTCTGTGGACCGGTTGGAAAATCTATATGGTTTATGGGAATCACGAGAACAGTATACTTTTTTGTTGTTGACCAAGAAAAGAGGAGCGCATATGAATTCTAT</canonical_amplicon>
		<polymorphic_amplicon>CGACTATTGAAAACTCAATTACAGTATTCTTGTAAATCACAATAAAGATTATATTGTTTGTGCCTGTTTGAATCAGCTCAGTTTGAAGATTGATTTCAGRTTTTGTTTTATTTTTTATTGGATGCCTTCGAAAAATCAGGCTTCTGTGGACCGGTTGGAAAATCTATATGGTTTATGGGAATCACGAGAACAGTATACTTTTTTGTTGTTGACCAAGAAAAGAGGAGCGCATATGAATTCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17798</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>173633</contig_pos>
        <strand>+</strand>
        <context>ATTTTTTATT[G/T]GATGCCTTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAATCAGCTCAGTTTGAAGATTGATTTCAGGTTTTGTTTTATTTTTTATT</left_flank>
        <right_flank>GATGCCTTCGAAAAATCAGGCTTCTGTGGACCGGTTGGAAAATCTATATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCACTGAATTCCTTCCCAACATTAATGCTGTGAAATCGTTGTATAAACAATTGGTTAGTTTTCACTGAAGTTCAAAAGTTAGACGAATGTTCTATGTCTTAATAATTCTTAACTCCTAATTTCAGTTCGACAGTTTCCCACAACTGGAAGCCAACGTCACTGAGACAAAACACTCCATGGAACGTCGGGTTGAGGAAGTCGAGGAGCAACTTCGATGCCGCAATCGTGATTTCCAACGTCTTCAGGAAAAGTTGGTAGCTGAGTGTTGCATCTGTTTGGCGACAAAACCATCCATCGTTTTCATGCCTTGCCGTCATTTGATCACATGTTCCGATTGCTATGATGCCAGCGATTTCCGAGAGTGTCCAACGTGTCGGTCGACTATTGAAAACTCAATTACAGTATTCTTGTAAATCACAATAAAGATTATATTGTTTGTGCCTGTTTGAATCAGCTCAGTTTGAAGATTGATTTCAGGTTTTGTTTTATTTTTTATTGGATGCCTTCGAAAAATCAGGCTTCTGTGGACCGGTTGGAAAATCTATATGGTTTATGGGAATCACGAGAACAGTATACTTTTTTGTTGTTGACCAAGAAAAGAGGAGCGCATATGAATTCTATCTCTCCCGCTTTCAGTTTCTTTCCATCTCTGGAAATAATAAAAAAACGGTTTTGCGAATAATCGATCAGCGATGAAAAGATGCGAACGAAGAAAAAAAAACAATAGAGATGGGGAGAGGAAAAAGAGAAATAAGTATTATCACCCACCCGTGCATTCCATTTTTTCTGTCTTCTCTTCTCTCCCATTTTGAATCTCTTCTCCTTTTCTCTCCCGATGATTTCCCTATCTCTCTAATTTTAACTGTATTTTCATCCCTTGTCAAAACAAATAGAAACGAAAACAATGTGCCATACTCTCTCGTACTATCTACTATCAGTTTCAGATGGTCGACGACGTGTTTCGATTGAAACGGAGTATGCTCTACGCAACGTTCTAC</canonical>
            <polymorphic>GTCCACTGAATTCCTTCCCAACATTAATGCTGTGAAATCGTTGTATAAACAATTGGTTAGTTTTCACTGAAGTTCAAAAGTTAGACGAATGTTCTATGTCTTAATAATTCTTAACTCCTAATTTCAGTTCGACAGTTTCCCACAACTGGAAGCCAACGTCACTGAGACAAAACACTCCATGGAACGTCGGGTTGAGGAAGTCGAGGAGCAACTTCGATGCCGCAATCGTGATTTCCAACGTCTTCAGGAAAAGTTGGTAGCTGAGTGTTGCATCTGTTTGGCGACAAAACCATCCATCGTTTTCATGCCTTGCCGTCATTTGATCACATGTTCCGATTGCTATGATGCCAGCGATTTCCGAGAGTGTCCAACGTGTCGGTCGACTATTGAAAACTCAATTACAGTATTCTTGTAAATCACAATAAAGATTATATTGTTTGTGCCTGTTTGAATCAGCTCAGTTTGAAGATTGATTTCAGGTTTTGTTTTATTTTTTATTKGATGCCTTCGAAAAATCAGGCTTCTGTGGACCGGTTGGAAAATCTATATGGTTTATGGGAATCACGAGAACAGTATACTTTTTTGTTGTTGACCAAGAAAAGAGGAGCGCATATGAATTCTATCTCTCCCGCTTTCAGTTTCTTTCCATCTCTGGAAATAATAAAAAAACGGTTTTGCGAATAATCGATCAGCGATGAAAAGATGCGAACGAAGAAAAAAAAACAATAGAGATGGGGAGAGGAAAAAGAGAAATAAGTATTATCACCCACCCGTGCATTCCATTTTTTCTGTCTTCTCTTCTCTCCCATTTTGAATCTCTTCTCCTTTTCTCTCCCGATGATTTCCCTATCTCTCTAATTTTAACTGTATTTTCATCCCTTGTCAAAACAAATAGAAACGAAAACAATGTGCCATACTCTCTCGTACTATCTACTATCAGTTTCAGATGGTCGACGACGTGTTTCGATTGAAACGGAGTATGCTCTACGCAACGTTCTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGACTATTGAAAACTCAATTACAG</pcr_primer_p1>
		<pcr_primer_p2>ATAGAATTCATATGCGCTCCT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CGACTATTGAAAACTCAATTACAGTATTCTTGTAAATCACAATAAAGATTATATTGTTTGTGCCTGTTTGAATCAGCTCAGTTTGAAGATTGATTTCAGGTTTTGTTTTATTTTTTATTGGATGCCTTCGAAAAATCAGGCTTCTGTGGACCGGTTGGAAAATCTATATGGTTTATGGGAATCACGAGAACAGTATACTTTTTTGTTGTTGACCAAGAAAAGAGGAGCGCATATGAATTCTAT</canonical_amplicon>
		<polymorphic_amplicon>CGACTATTGAAAACTCAATTACAGTATTCTTGTAAATCACAATAAAGATTATATTGTTTGTGCCTGTTTGAATCAGCTCAGTTTGAAGATTGATTTCAGGTTTTGTTTTATTTTTTATTKGATGCCTTCGAAAAATCAGGCTTCTGTGGACCGGTTGGAAAATCTATATGGTTTATGGGAATCACGAGAACAGTATACTTTTTTGTTGTTGACCAAGAAAAGAGGAGCGCATATGAATTCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17799</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>174014</contig_pos>
        <strand>+</strand>
        <context>TTTCATCCCT[A/T]GTCAAAACAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTCCCGATGATTTCCCTATCTCTCTAATTTTAACTGTATTTTCATCCCT</left_flank>
        <right_flank>GTCAAAACAAATAGAAACGAAAACAATGTGCCATACTCTCTCGTACTATC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTATTGAAAACTCAATTACAGTATTCTTGTAAATCACAATAAAGATTATATTGTTTGTGCCTGTTTGAATCAGCTCAGTTTGAAGATTGATTTCAGGTTTTGTTTTATTTTTTATTGGATGCCTTCGAAAAATCAGGCTTCTGTGGACCGGTTGGAAAATCTATATGGTTTATGGGAATCACGAGAACAGTATACTTTTTTGTTGTTGACCAAGAAAAGAGGAGCGCATATGAATTCTATCTCTCCCGCTTTCAGTTTCTTTCCATCTCTGGAAATAATAAAAAAACGGTTTTGCGAATAATCGATCAGCGATGAAAAGATGCGAACGAAGAAAAAAAAACAATAGAGATGGGGAGAGGAAAAAGAGAAATAAGTATTATCACCCACCCGTGCATTCCATTTTTTCTGTCTTCTCTTCTCTCCCATTTTGAATCTCTTCTCCTTTTCTCTCCCGATGATTTCCCTATCTCTCTAATTTTAACTGTATTTTCATCCCTTGTCAAAACAAATAGAAACGAAAACAATGTGCCATACTCTCTCGTACTATCTACTATCAGTTTCAGATGGTCGACGACGTGTTTCGATTGAAACGGAGTATGCTCTACGCAACGTTCTACGCAAAATATCAAGACGCCGAAGAGATGAGATTCTGGTCAACGACTCCAGGACCTATTGCTGCTGAAAACCCGTTTAATCTGGATAACATTGGAAATGGTTACGGTAAGTGCAGTTCAGCAAAGTTTCAAGTCTCTGAGGAGCTGACGGGGTTATAAGATCTGTAGTTCCTTATTTCAGATCTATTTCTAGAGATTGATGCCTAAGCTATTGCCATTGAAATTTCGGCGAAGTATTTTGAAAGTAAAACTGGCTCGAATGCAGTGATAGTATCGTTCAATAAGATTACGAAAAGTTTCAGTTGATTTTCGGCCATTTTGACCATTTTCAGGAGTCTATAGCTCGGCTGTCAAGCTTTCGATCACTTTGAAATTTTTGGAAAG</canonical>
            <polymorphic>GACTATTGAAAACTCAATTACAGTATTCTTGTAAATCACAATAAAGATTATATTGTTTGTGCCTGTTTGAATCAGCTCAGTTTGAAGATTGATTTCAGGTTTTGTTTTATTTTTTATTGGATGCCTTCGAAAAATCAGGCTTCTGTGGACCGGTTGGAAAATCTATATGGTTTATGGGAATCACGAGAACAGTATACTTTTTTGTTGTTGACCAAGAAAAGAGGAGCGCATATGAATTCTATCTCTCCCGCTTTCAGTTTCTTTCCATCTCTGGAAATAATAAAAAAACGGTTTTGCGAATAATCGATCAGCGATGAAAAGATGCGAACGAAGAAAAAAAAACAATAGAGATGGGGAGAGGAAAAAGAGAAATAAGTATTATCACCCACCCGTGCATTCCATTTTTTCTGTCTTCTCTTCTCTCCCATTTTGAATCTCTTCTCCTTTTCTCTCCCGATGATTTCCCTATCTCTCTAATTTTAACTGTATTTTCATCCCTWGTCAAAACAAATAGAAACGAAAACAATGTGCCATACTCTCTCGTACTATCTACTATCAGTTTCAGATGGTCGACGACGTGTTTCGATTGAAACGGAGTATGCTCTACGCAACGTTCTACGCAAAATATCAAGACGCCGAAGAGATGAGATTCTGGTCAACGACTCCAGGACCTATTGCTGCTGAAAACCCGTTTAATCTGGATAACATTGGAAATGGTTACGGTAAGTGCAGTTCAGCAAAGTTTCAAGTCTCTGAGGAGCTGACGGGGTTATAAGATCTGTAGTTCCTTATTTCAGATCTATTTCTAGAGATTGATGCCTAAGCTATTGCCATTGAAATTTCGGCGAAGTATTTTGAAAGTAAAACTGGCTCGAATGCAGTGATAGTATCGTTCAATAAGATTACGAAAAGTTTCAGTTGATTTTCGGCCATTTTGACCATTTTCAGGAGTCTATAGCTCGGCTGTCAAGCTTTCGATCACTTTGAAATTTTTGGAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTTCTCTTCTCTCCCATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGACCAGAATCTCATCTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCTTCTCTTCTCTCCCATTTTGAATCTCTTCTCCTTTTCTCTCCCGATGATTTCCCTATCTCTCTAATTTTAACTGTATTTTCATCCCTTGTCAAAACAAATAGAAACGAAAACAATGTGCCATACTCTCTCGTACTATCTACTATCAGTTTCAGATGGTCGACGACGTGTTTCGATTGAAACGGAGTATGCTCTACGCAACGTTCTACGCAAAATATCAAGACGCCGAAGAGATGAGATTCTGGTCAA</canonical_amplicon>
		<polymorphic_amplicon>GTCTTCTCTTCTCTCCCATTTTGAATCTCTTCTCCTTTTCTCTCCCGATGATTTCCCTATCTCTCTAATTTTAACTGTATTTTCATCCCTWGTCAAAACAAATAGAAACGAAAACAATGTGCCATACTCTCTCGTACTATCTACTATCAGTTTCAGATGGTCGACGACGTGTTTCGATTGAAACGGAGTATGCTCTACGCAACGTTCTACGCAAAATATCAAGACGCCGAAGAGATGAGATTCTGGTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17800</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>174026</contig_pos>
        <strand>+</strand>
        <context>TCAAAACAAA[C/T]AGAAACGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCCTATCTCTCTAATTTTAACTGTATTTTCATCCCTTGTCAAAACAAA</left_flank>
        <right_flank>AGAAACGAAAACAATGTGCCATACTCTCTCGTACTATCTACTATCAGTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAATTACAGTATTCTTGTAAATCACAATAAAGATTATATTGTTTGTGCCTGTTTGAATCAGCTCAGTTTGAAGATTGATTTCAGGTTTTGTTTTATTTTTTATTGGATGCCTTCGAAAAATCAGGCTTCTGTGGACCGGTTGGAAAATCTATATGGTTTATGGGAATCACGAGAACAGTATACTTTTTTGTTGTTGACCAAGAAAAGAGGAGCGCATATGAATTCTATCTCTCCCGCTTTCAGTTTCTTTCCATCTCTGGAAATAATAAAAAAACGGTTTTGCGAATAATCGATCAGCGATGAAAAGATGCGAACGAAGAAAAAAAAACAATAGAGATGGGGAGAGGAAAAAGAGAAATAAGTATTATCACCCACCCGTGCATTCCATTTTTTCTGTCTTCTCTTCTCTCCCATTTTGAATCTCTTCTCCTTTTCTCTCCCGATGATTTCCCTATCTCTCTAATTTTAACTGTATTTTCATCCCTTGTCAAAACAAATAGAAACGAAAACAATGTGCCATACTCTCTCGTACTATCTACTATCAGTTTCAGATGGTCGACGACGTGTTTCGATTGAAACGGAGTATGCTCTACGCAACGTTCTACGCAAAATATCAAGACGCCGAAGAGATGAGATTCTGGTCAACGACTCCAGGACCTATTGCTGCTGAAAACCCGTTTAATCTGGATAACATTGGAAATGGTTACGGTAAGTGCAGTTCAGCAAAGTTTCAAGTCTCTGAGGAGCTGACGGGGTTATAAGATCTGTAGTTCCTTATTTCAGATCTATTTCTAGAGATTGATGCCTAAGCTATTGCCATTGAAATTTCGGCGAAGTATTTTGAAAGTAAAACTGGCTCGAATGCAGTGATAGTATCGTTCAATAAGATTACGAAAAGTTTCAGTTGATTTTCGGCCATTTTGACCATTTTCAGGAGTCTATAGCTCGGCTGTCAAGCTTTCGATCACTTTGAAATTTTTGGAAAGTATAAAATAGTC</canonical>
            <polymorphic>CTCAATTACAGTATTCTTGTAAATCACAATAAAGATTATATTGTTTGTGCCTGTTTGAATCAGCTCAGTTTGAAGATTGATTTCAGGTTTTGTTTTATTTTTTATTGGATGCCTTCGAAAAATCAGGCTTCTGTGGACCGGTTGGAAAATCTATATGGTTTATGGGAATCACGAGAACAGTATACTTTTTTGTTGTTGACCAAGAAAAGAGGAGCGCATATGAATTCTATCTCTCCCGCTTTCAGTTTCTTTCCATCTCTGGAAATAATAAAAAAACGGTTTTGCGAATAATCGATCAGCGATGAAAAGATGCGAACGAAGAAAAAAAAACAATAGAGATGGGGAGAGGAAAAAGAGAAATAAGTATTATCACCCACCCGTGCATTCCATTTTTTCTGTCTTCTCTTCTCTCCCATTTTGAATCTCTTCTCCTTTTCTCTCCCGATGATTTCCCTATCTCTCTAATTTTAACTGTATTTTCATCCCTTGTCAAAACAAAYAGAAACGAAAACAATGTGCCATACTCTCTCGTACTATCTACTATCAGTTTCAGATGGTCGACGACGTGTTTCGATTGAAACGGAGTATGCTCTACGCAACGTTCTACGCAAAATATCAAGACGCCGAAGAGATGAGATTCTGGTCAACGACTCCAGGACCTATTGCTGCTGAAAACCCGTTTAATCTGGATAACATTGGAAATGGTTACGGTAAGTGCAGTTCAGCAAAGTTTCAAGTCTCTGAGGAGCTGACGGGGTTATAAGATCTGTAGTTCCTTATTTCAGATCTATTTCTAGAGATTGATGCCTAAGCTATTGCCATTGAAATTTCGGCGAAGTATTTTGAAAGTAAAACTGGCTCGAATGCAGTGATAGTATCGTTCAATAAGATTACGAAAAGTTTCAGTTGATTTTCGGCCATTTTGACCATTTTCAGGAGTCTATAGCTCGGCTGTCAAGCTTTCGATCACTTTGAAATTTTTGGAAAGTATAAAATAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTTCTCTTCTCTCCCATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGACCAGAATCTCATCTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCTTCTCTTCTCTCCCATTTTGAATCTCTTCTCCTTTTCTCTCCCGATGATTTCCCTATCTCTCTAATTTTAACTGTATTTTCATCCCTTGTCAAAACAAATAGAAACGAAAACAATGTGCCATACTCTCTCGTACTATCTACTATCAGTTTCAGATGGTCGACGACGTGTTTCGATTGAAACGGAGTATGCTCTACGCAACGTTCTACGCAAAATATCAAGACGCCGAAGAGATGAGATTCTGGTCAA</canonical_amplicon>
		<polymorphic_amplicon>GTCTTCTCTTCTCTCCCATTTTGAATCTCTTCTCCTTTTCTCTCCCGATGATTTCCCTATCTCTCTAATTTTAACTGTATTTTCATCCCTTGTCAAAACAAAYAGAAACGAAAACAATGTGCCATACTCTCTCGTACTATCTACTATCAGTTTCAGATGGTCGACGACGTGTTTCGATTGAAACGGAGTATGCTCTACGCAACGTTCTACGCAAAATATCAAGACGCCGAAGAGATGAGATTCTGGTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17801</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>177253</contig_pos>
        <strand>+</strand>
        <context>ATCACATTAC[A/C]ATCTTCTACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCATTTTTGTTTTTTTTTACATTCCTATTATGGGAAAGGTATCACATTAC</left_flank>
        <right_flank>ATCTTCTACCATGTTGGAAATTCTCTATTCCTATGACGTACTCAGAGGGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCCCAAAAATCCTCGAGTTCTAATCATATTTTGTTTCAGTGGACTATTCGGGATGTCCGATTGGATCTAAGTCAATCAACAATCTGAATTCCAACAGCTCCATCTGTGCTCATATCGACAACGAAAACTGCACCGGACCAAACACCTATTGCTCAAGAGGAGCGTTTTTTGGAAAGTGTTGTGACAAGACAATCAGAGGTTGGTTGAATTTTAGTGACTATTCGCCAACTTTCGAAAACAAAAATGTCAGTATGTAGTATAGTCAAAAATGTAATCTTTCGGTTTTTCGATCAGCTTAGAACACATAGAAAAACATTTGCAGAAAAGTGGTAGGGTCGTGTTTTTATTTTGATAGTCGTAGAGAGCAAACATCAGCAATGTTCGAGGGTTACTGATTTACATGCTAGTATATAAAACCGCAGTTTTCCTAGAATTTTTTGATACATTTCATTTTTGTTTTTTTTTACATTCCTATTATGGGAAAGGTATCACATTACAATCTTCTACCATGTTGGAAATTCTCTATTCCTATGACGTACTCAGAGGGTTCAAAATGCCATTATCAGAAATTGCGCCCCAGATAACTTTTAGGTCAGACGAAATTCAATAATTTGAAAAAGAAAAGCATAGGGATGTTCACTGGGGGAGGGGGGGGGGCGATTTCTGACAAGAAGTTTTTGGAACCCTGTACGTACGGGATCTCTTTAAGGTTAAATATATTTTTTGCAGACAAGGAAAACAGTGACAGAAGTGAGAAAGAAGGATGTTCTCCAGGAACCAAGAAGGTCACTTACAAAACTGGGGGCGGATTCTCGGTCACTCTTCTCGGAAAGACCTGCGGATCTAACTTTTGCCCGCAGAAATCCACGTGTCACCAAGGCAATTATTTCGCTTACTGCTGCGCTGCGATTTGAATTGGACCAACAAGAATCAAAGTATCATCCGGTGACATAAACCGTGAGCCTTTTCATGACAAATGTTTTTTAATGCATAAATGT</canonical>
            <polymorphic>AACCCCAAAAATCCTCGAGTTCTAATCATATTTTGTTTCAGTGGACTATTCGGGATGTCCGATTGGATCTAAGTCAATCAACAATCTGAATTCCAACAGCTCCATCTGTGCTCATATCGACAACGAAAACTGCACCGGACCAAACACCTATTGCTCAAGAGGAGCGTTTTTTGGAAAGTGTTGTGACAAGACAATCAGAGGTTGGTTGAATTTTAGTGACTATTCGCCAACTTTCGAAAACAAAAATGTCAGTATGTAGTATAGTCAAAAATGTAATCTTTCGGTTTTTCGATCAGCTTAGAACACATAGAAAAACATTTGCAGAAAAGTGGTAGGGTCGTGTTTTTATTTTGATAGTCGTAGAGAGCAAACATCAGCAATGTTCGAGGGTTACTGATTTACATGCTAGTATATAAAACCGCAGTTTTCCTAGAATTTTTTGATACATTTCATTTTTGTTTTTTTTTACATTCCTATTATGGGAAAGGTATCACATTACMATCTTCTACCATGTTGGAAATTCTCTATTCCTATGACGTACTCAGAGGGTTCAAAATGCCATTATCAGAAATTGCGCCCCAGATAACTTTTAGGTCAGACGAAATTCAATAATTTGAAAAAGAAAAGCATAGGGATGTTCACTGGGGGAGGGGGGGGGGCGATTTCTGACAAGAAGTTTTTGGAACCCTGTACGTACGGGATCTCTTTAAGGTTAAATATATTTTTTGCAGACAAGGAAAACAGTGACAGAAGTGAGAAAGAAGGATGTTCTCCAGGAACCAAGAAGGTCACTTACAAAACTGGGGGCGGATTCTCGGTCACTCTTCTCGGAAAGACCTGCGGATCTAACTTTTGCCCGCAGAAATCCACGTGTCACCAAGGCAATTATTTCGCTTACTGCTGCGCTGCGATTTGAATTGGACCAACAAGAATCAAAGTATCATCCGGTGACATAAACCGTGAGCCTTTTCATGACAAATGTTTTTTAATGCATAAATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGAAAAACATTTGCAGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAACCCTCTGAGTACG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAGAAAAACATTTGCAGAAAAGTGGTAGGGTCGTGTTTTTATTTTGATAGTCGTAGAGAGCAAACATCAGCAATGTTCGAGGGTTACTGATTTACATGCTAGTATATAAAACCGCAGTTTTCCTAGAATTTTTTGATACATTTCATTTTTGTTTTTTTTTACATTCCTATTATGGGAAAGGTATCACATTACAATCTTCTACCATGTTGGAAATTCTCTATTCCTATGACGTACTCAGAGGGTTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATAGAAAAACATTTGCAGAAAAGTGGTAGGGTCGTGTTTTTATTTTGATAGTCGTAGAGAGCAAACATCAGCAATGTTCGAGGGTTACTGATTTACATGCTAGTATATAAAACCGCAGTTTTCCTAGAATTTTTTGATACATTTCATTTTTGTTTTTTTTTACATTCCTATTATGGGAAAGGTATCACATTACMATCTTCTACCATGTTGGAAATTCTCTATTCCTATGACGTACTCAGAGGGTTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17802</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>176942</contig_pos>
        <strand>+</strand>
        <context>TGTTGTGACA[A/C]GACAATCAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACCAAACACCTATTGCTCAAGAGGAGCGTTTTTTGGAAAGTGTTGTGACA</left_flank>
        <right_flank>GACAATCAGAGGTTGGTTGAATTTTAGTGACTATTCGCCAACTTTCGAAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTAAGAGACTACTAATAAAGTGCTAACCAGAACAAATAGTTCGTATTTTTGCAGTTCTATATGGATGCCGATACGGAGACATGTTTGGCATTCAAGTACTCGGGTTGTGGCGGAAACGAGAACAACTTTGACTCGTGGAATGGATGCTCGAGGTGTTTTGCAAGTGAGTCATGTTCTGAGAGTGTATTACATTGTTGTGTGTGCGACAGTTGATGCCTAAAAGAGTTCAGTGGCAGATCAATTGCTCACAGATAACGAGTGGGACCGCCCAACTTCTCCTTTGTTTTGTGGTTCTCAAAATTTCTCACAAACCCCAAAAATCCTCGAGTTCTAATCATATTTTGTTTCAGTGGACTATTCGGGATGTCCGATTGGATCTAAGTCAATCAACAATCTGAATTCCAACAGCTCCATCTGTGCTCATATCGACAACGAAAACTGCACCGGACCAAACACCTATTGCTCAAGAGGAGCGTTTTTTGGAAAGTGTTGTGACAAGACAATCAGAGGTTGGTTGAATTTTAGTGACTATTCGCCAACTTTCGAAAACAAAAATGTCAGTATGTAGTATAGTCAAAAATGTAATCTTTCGGTTTTTCGATCAGCTTAGAACACATAGAAAAACATTTGCAGAAAAGTGGTAGGGTCGTGTTTTTATTTTGATAGTCGTAGAGAGCAAACATCAGCAATGTTCGAGGGTTACTGATTTACATGCTAGTATATAAAACCGCAGTTTTCCTAGAATTTTTTGATACATTTCATTTTTGTTTTTTTTTACATTCCTATTATGGGAAAGGTATCACATTACAATCTTCTACCATGTTGGAAATTCTCTATTCCTATGACGTACTCAGAGGGTTCAAAATGCCATTATCAGAAATTGCGCCCCAGATAACTTTTAGGTCAGACGAAATTCAATAATTTGAAAAAGAAAAGCATAGGGATGTTCACTGGGGGAGGGGGGGGGGCGATTTCTGACAAGAAGTTTTTGGAACCCT</canonical>
            <polymorphic>GAGTAAGAGACTACTAATAAAGTGCTAACCAGAACAAATAGTTCGTATTTTTGCAGTTCTATATGGATGCCGATACGGAGACATGTTTGGCATTCAAGTACTCGGGTTGTGGCGGAAACGAGAACAACTTTGACTCGTGGAATGGATGCTCGAGGTGTTTTGCAAGTGAGTCATGTTCTGAGAGTGTATTACATTGTTGTGTGTGCGACAGTTGATGCCTAAAAGAGTTCAGTGGCAGATCAATTGCTCACAGATAACGAGTGGGACCGCCCAACTTCTCCTTTGTTTTGTGGTTCTCAAAATTTCTCACAAACCCCAAAAATCCTCGAGTTCTAATCATATTTTGTTTCAGTGGACTATTCGGGATGTCCGATTGGATCTAAGTCAATCAACAATCTGAATTCCAACAGCTCCATCTGTGCTCATATCGACAACGAAAACTGCACCGGACCAAACACCTATTGCTCAAGAGGAGCGTTTTTTGGAAAGTGTTGTGACAMGACAATCAGAGGTTGGTTGAATTTTAGTGACTATTCGCCAACTTTCGAAAACAAAAATGTCAGTATGTAGTATAGTCAAAAATGTAATCTTTCGGTTTTTCGATCAGCTTAGAACACATAGAAAAACATTTGCAGAAAAGTGGTAGGGTCGTGTTTTTATTTTGATAGTCGTAGAGAGCAAACATCAGCAATGTTCGAGGGTTACTGATTTACATGCTAGTATATAAAACCGCAGTTTTCCTAGAATTTTTTGATACATTTCATTTTTGTTTTTTTTTACATTCCTATTATGGGAAAGGTATCACATTACAATCTTCTACCATGTTGGAAATTCTCTATTCCTATGACGTACTCAGAGGGTTCAAAATGCCATTATCAGAAATTGCGCCCCAGATAACTTTTAGGTCAGACGAAATTCAATAATTTGAAAAAGAAAAGCATAGGGATGTTCACTGGGGGAGGGGGGGGGGCGATTTCTGACAAGAAGTTTTTGGAACCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCCTCGAGTTCTAATCAT</pcr_primer_p1>
		<pcr_primer_p2>GACATTTTTGTTTTCGAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCCTCGAGTTCTAATCATATTTTGTTTCAGTGGACTATTCGGGATGTCCGATTGGATCTAAGTCAATCAACAATCTGAATTCCAACAGCTCCATCTGTGCTCATATCGACAACGAAAACTGCACCGGACCAAACACCTATTGCTCAAGAGGAGCGTTTTTTGGAAAGTGTTGTGACAAGACAATCAGAGGTTGGTTGAATTTTAGTGACTATTCGCCAACTTTCGAAAACAAAAATGTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCCTCGAGTTCTAATCATATTTTGTTTCAGTGGACTATTCGGGATGTCCGATTGGATCTAAGTCAATCAACAATCTGAATTCCAACAGCTCCATCTGTGCTCATATCGACAACGAAAACTGCACCGGACCAAACACCTATTGCTCAAGAGGAGCGTTTTTTGGAAAGTGTTGTGACAMGACAATCAGAGGTTGGTTGAATTTTAGTGACTATTCGCCAACTTTCGAAAACAAAAATGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17803</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>247470</contig_pos>
        <strand>+</strand>
        <context>GGATGCTCAC[C/G]ATCCCTGTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCATTCTATCAAACAGTGACTACCTGGAAGTACCTCACTGGGATGCTCAC</left_flank>
        <right_flank>ATCCCTGTCGTCTACTCTTCTGGAATCGTAATCTGGGGATTCCTGGCTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCTAAGTAAATAAATCGGATTTTATTTCCGGATTCTATATTTTTGTCTAGTGATGGCTTTGACCACTTTCCAATTTTTAAACCAAATTTTTATCGCGTCTGAAATCGTTTTCTTCAACATTTTCGGATTGTTTGGTAATCTAAATTTCATATTTCTTACTGCAACTAAAACTAAACTGAAATCAAAATCTTGTGAGTTTATCTCATGACGATTTCCAAAAATCAAACTGATTCTTCATTTTCAGCGTATCTTCAATGTGCACTCTGCTTCTCCCACATCATCTGCCTCTCATTCGAACTTCCAAACGCTGGCCTTCTGTTCACCGGAATCCAGTTGAAACGAAATCAATGTTTTCCGGCAATATCCATTTACATTTTTTTTATTTGTGCTCAAGCCGTGATTATCCTTATGATGACCCTCGACATTTTTATAATCGTTTTCTTTCCTGCATTCTATCAAACAGTGACTACCTGGAAGTACCTCACTGGGATGCTCACGATCCCTGTCGTCTACTCTTCTGGAATCGTAATCTGGGGATTCCTGGCTATGGACGATGAAATCGTGATGTTCTGTAACCCACCACTTGCTCTCTATCATACAGTATCCCGTTTTTGGACATTTTCCAACGTCATTATCAATACCATCACCTTGGTTTTGTTCATAAGTTTAATCTTACTTTTCTATTACAAAGGAAAGAAGCAAAAGAGTGATACCAGAAAAATTATGAAGCGTCTAAAAGTGTCTATCCTATTTTTCATCTTCACCTGGTACATAGGTTTACTGGCTGCAGACTTGTTCGTGGCTCTCGGCTTCACGGGGCCTACATTAATTTTCATGATGAGCAATTTGGTATTTCACAGAGAGTCAAAAATATATTCGTTTCGTTATTTTTTTAGGTTTTCTTTGTCCTGATCTCCTATTCTCAATTCTTCTACGTTGTCATTTGGAGATCTCCAGAATACCGAAACGCATTCTTTGAAGCATGGAGTTGTATTCCT</canonical>
            <polymorphic>ATTCTAAGTAAATAAATCGGATTTTATTTCCGGATTCTATATTTTTGTCTAGTGATGGCTTTGACCACTTTCCAATTTTTAAACCAAATTTTTATCGCGTCTGAAATCGTTTTCTTCAACATTTTCGGATTGTTTGGTAATCTAAATTTCATATTTCTTACTGCAACTAAAACTAAACTGAAATCAAAATCTTGTGAGTTTATCTCATGACGATTTCCAAAAATCAAACTGATTCTTCATTTTCAGCGTATCTTCAATGTGCACTCTGCTTCTCCCACATCATCTGCCTCTCATTCGAACTTCCAAACGCTGGCCTTCTGTTCACCGGAATCCAGTTGAAACGAAATCAATGTTTTCCGGCAATATCCATTTACATTTTTTTTATTTGTGCTCAAGCCGTGATTATCCTTATGATGACCCTCGACATTTTTATAATCGTTTTCTTTCCTGCATTCTATCAAACAGTGACTACCTGGAAGTACCTCACTGGGATGCTCACSATCCCTGTCGTCTACTCTTCTGGAATCGTAATCTGGGGATTCCTGGCTATGGACGATGAAATCGTGATGTTCTGTAACCCACCACTTGCTCTCTATCATACAGTATCCCGTTTTTGGACATTTTCCAACGTCATTATCAATACCATCACCTTGGTTTTGTTCATAAGTTTAATCTTACTTTTCTATTACAAAGGAAAGAAGCAAAAGAGTGATACCAGAAAAATTATGAAGCGTCTAAAAGTGTCTATCCTATTTTTCATCTTCACCTGGTACATAGGTTTACTGGCTGCAGACTTGTTCGTGGCTCTCGGCTTCACGGGGCCTACATTAATTTTCATGATGAGCAATTTGGTATTTCACAGAGAGTCAAAAATATATTCGTTTCGTTATTTTTTTAGGTTTTCTTTGTCCTGATCTCCTATTCTCAATTCTTCTACGTTGTCATTTGGAGATCTCCAGAATACCGAAACGCATTCTTTGAAGCATGGAGTTGTATTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>499 413 50 38</canonical_bands>
                <polymorphic_bands>912 50 38</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>291 273 176 74 46 44 43 30 23</canonical_bands>
                <polymorphic_bands>314 273 176 74 46 44 43 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCAATATCCATTTACATTTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTGTATGATAGAGAGCAAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGCAATATCCATTTACATTTTTTTTATTTGTGCTCAAGCCGTGATTATCCTTATGATGACCCTCGACATTTTTATAATCGTTTTCTTTCCTGCATTCTATCAAACAGTGACTACCTGGAAGTACCTCACTGGGATGCTCACGATCCCTGTCGTCTACTCTTCTGGAATCGTAATCTGGGGATTCCTGGCTATGGACGATGAAATCGTGATGTTCTGTAACCCACCACTTGCTCTCTATCATACAGT</canonical_amplicon>
		<polymorphic_amplicon>GGCAATATCCATTTACATTTTTTTTATTTGTGCTCAAGCCGTGATTATCCTTATGATGACCCTCGACATTTTTATAATCGTTTTCTTTCCTGCATTCTATCAAACAGTGACTACCTGGAAGTACCTCACTGGGATGCTCACSATCCCTGTCGTCTACTCTTCTGGAATCGTAATCTGGGGATTCCTGGCTATGGACGATGAAATCGTGATGTTCTGTAACCCACCACTTGCTCTCTATCATACAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17804</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>247631</contig_pos>
        <strand>+</strand>
        <context>TTGGTTTTGT[C/T]CATAAGTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTGGACATTTTCCAACGTCATTATCAATACCATCACCTTGGTTTTGT</left_flank>
        <right_flank>CATAAGTTTAATCTTACTTTTCTATTACAAAGGAAAGAAGCAAAAGAGTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCAACTAAAACTAAACTGAAATCAAAATCTTGTGAGTTTATCTCATGACGATTTCCAAAAATCAAACTGATTCTTCATTTTCAGCGTATCTTCAATGTGCACTCTGCTTCTCCCACATCATCTGCCTCTCATTCGAACTTCCAAACGCTGGCCTTCTGTTCACCGGAATCCAGTTGAAACGAAATCAATGTTTTCCGGCAATATCCATTTACATTTTTTTTATTTGTGCTCAAGCCGTGATTATCCTTATGATGACCCTCGACATTTTTATAATCGTTTTCTTTCCTGCATTCTATCAAACAGTGACTACCTGGAAGTACCTCACTGGGATGCTCACGATCCCTGTCGTCTACTCTTCTGGAATCGTAATCTGGGGATTCCTGGCTATGGACGATGAAATCGTGATGTTCTGTAACCCACCACTTGCTCTCTATCATACAGTATCCCGTTTTTGGACATTTTCCAACGTCATTATCAATACCATCACCTTGGTTTTGTTCATAAGTTTAATCTTACTTTTCTATTACAAAGGAAAGAAGCAAAAGAGTGATACCAGAAAAATTATGAAGCGTCTAAAAGTGTCTATCCTATTTTTCATCTTCACCTGGTACATAGGTTTACTGGCTGCAGACTTGTTCGTGGCTCTCGGCTTCACGGGGCCTACATTAATTTTCATGATGAGCAATTTGGTATTTCACAGAGAGTCAAAAATATATTCGTTTCGTTATTTTTTTAGGTTTTCTTTGTCCTGATCTCCTATTCTCAATTCTTCTACGTTGTCATTTGGAGATCTCCAGAATACCGAAACGCATTCTTTGAAGCATGGAGTTGTATTCCTTGCTGCGCAGGTCTCAAGGAAAAACACATTATGTCTACAAAAATATCGGCCACTGCTCATTCCCATCAAGCAGCGTCAACAGTTTCTTCAACATAATAATTCAAATTCGAACATTTTATTTGGATCATTCAATACTTTTTTGACAATTTCTTCTAATCCCA</canonical>
            <polymorphic>TGCAACTAAAACTAAACTGAAATCAAAATCTTGTGAGTTTATCTCATGACGATTTCCAAAAATCAAACTGATTCTTCATTTTCAGCGTATCTTCAATGTGCACTCTGCTTCTCCCACATCATCTGCCTCTCATTCGAACTTCCAAACGCTGGCCTTCTGTTCACCGGAATCCAGTTGAAACGAAATCAATGTTTTCCGGCAATATCCATTTACATTTTTTTTATTTGTGCTCAAGCCGTGATTATCCTTATGATGACCCTCGACATTTTTATAATCGTTTTCTTTCCTGCATTCTATCAAACAGTGACTACCTGGAAGTACCTCACTGGGATGCTCACGATCCCTGTCGTCTACTCTTCTGGAATCGTAATCTGGGGATTCCTGGCTATGGACGATGAAATCGTGATGTTCTGTAACCCACCACTTGCTCTCTATCATACAGTATCCCGTTTTTGGACATTTTCCAACGTCATTATCAATACCATCACCTTGGTTTTGTYCATAAGTTTAATCTTACTTTTCTATTACAAAGGAAAGAAGCAAAAGAGTGATACCAGAAAAATTATGAAGCGTCTAAAAGTGTCTATCCTATTTTTCATCTTCACCTGGTACATAGGTTTACTGGCTGCAGACTTGTTCGTGGCTCTCGGCTTCACGGGGCCTACATTAATTTTCATGATGAGCAATTTGGTATTTCACAGAGAGTCAAAAATATATTCGTTTCGTTATTTTTTTAGGTTTTCTTTGTCCTGATCTCCTATTCTCAATTCTTCTACGTTGTCATTTGGAGATCTCCAGAATACCGAAACGCATTCTTTGAAGCATGGAGTTGTATTCCTTGCTGCGCAGGTCTCAAGGAAAAACACATTATGTCTACAAAAATATCGGCCACTGCTCATTCCCATCAAGCAGCGTCAACAGTTTCTTCAACATAATAATTCAAATTCGAACATTTTATTTGGATCATTCAATACTTTTTTGACAATTTCTTCTAATCCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTCTTCTGGAATCGTAATCTG</pcr_primer_p1>
		<pcr_primer_p2>TGAAGATGAAAAATAGGATAGACA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TACTCTTCTGGAATCGTAATCTGGGGATTCCTGGCTATGGACGATGAAATCGTGATGTTCTGTAACCCACCACTTGCTCTCTATCATACAGTATCCCGTTTTTGGACATTTTCCAACGTCATTATCAATACCATCACCTTGGTTTTGTTCATAAGTTTAATCTTACTTTTCTATTACAAAGGAAAGAAGCAAAAGAGTGATACCAGAAAAATTATGAAGCGTCTAAAAGTGTCTATCCTATTTTTCATCTTCA</canonical_amplicon>
		<polymorphic_amplicon>TACTCTTCTGGAATCGTAATCTGGGGATTCCTGGCTATGGACGATGAAATCGTGATGTTCTGTAACCCACCACTTGCTCTCTATCATACAGTATCCCGTTTTTGGACATTTTCCAACGTCATTATCAATACCATCACCTTGGTTTTGTYCATAAGTTTAATCTTACTTTTCTATTACAAAGGAAAGAAGCAAAAGAGTGATACCAGAAAAATTATGAAGCGTCTAAAAGTGTCTATCCTATTTTTCATCTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17805</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>247801</contig_pos>
        <strand>+</strand>
        <context>GCCTACATTA[A/G]TTTTCATGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACTGGCTGCAGACTTGTTCGTGGCTCTCGGCTTCACGGGGCCTACATTA</left_flank>
        <right_flank>TTTTCATGATGAGCAATTTGGTATTTCACAGAGAGTCAAAAATATATTCG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGTTGAAACGAAATCAATGTTTTCCGGCAATATCCATTTACATTTTTTTTATTTGTGCTCAAGCCGTGATTATCCTTATGATGACCCTCGACATTTTTATAATCGTTTTCTTTCCTGCATTCTATCAAACAGTGACTACCTGGAAGTACCTCACTGGGATGCTCACGATCCCTGTCGTCTACTCTTCTGGAATCGTAATCTGGGGATTCCTGGCTATGGACGATGAAATCGTGATGTTCTGTAACCCACCACTTGCTCTCTATCATACAGTATCCCGTTTTTGGACATTTTCCAACGTCATTATCAATACCATCACCTTGGTTTTGTTCATAAGTTTAATCTTACTTTTCTATTACAAAGGAAAGAAGCAAAAGAGTGATACCAGAAAAATTATGAAGCGTCTAAAAGTGTCTATCCTATTTTTCATCTTCACCTGGTACATAGGTTTACTGGCTGCAGACTTGTTCGTGGCTCTCGGCTTCACGGGGCCTACATTAATTTTCATGATGAGCAATTTGGTATTTCACAGAGAGTCAAAAATATATTCGTTTCGTTATTTTTTTAGGTTTTCTTTGTCCTGATCTCCTATTCTCAATTCTTCTACGTTGTCATTTGGAGATCTCCAGAATACCGAAACGCATTCTTTGAAGCATGGAGTTGTATTCCTTGCTGCGCAGGTCTCAAGGAAAAACACATTATGTCTACAAAAATATCGGCCACTGCTCATTCCCATCAAGCAGCGTCAACAGTTTCTTCAACATAATAATTCAAATTCGAACATTTTATTTGGATCATTCAATACTTTTTTGACAATTTCTTCTAATCCCATTTTGACCCGTAATAAAAAAAACTTGAGAATAAATATGACATTTGTGAAGTTGAAGTGAGAAATCACTTCCATTCTAAAACATGAGTCTCTGAGAGGAGTACAAAAACAAGAAATGATACAAAAACTGTGAGAAGAGCTACTGCATGAGGCCATCGAACCTTGAATTTTT</canonical>
            <polymorphic>CCAGTTGAAACGAAATCAATGTTTTCCGGCAATATCCATTTACATTTTTTTTATTTGTGCTCAAGCCGTGATTATCCTTATGATGACCCTCGACATTTTTATAATCGTTTTCTTTCCTGCATTCTATCAAACAGTGACTACCTGGAAGTACCTCACTGGGATGCTCACGATCCCTGTCGTCTACTCTTCTGGAATCGTAATCTGGGGATTCCTGGCTATGGACGATGAAATCGTGATGTTCTGTAACCCACCACTTGCTCTCTATCATACAGTATCCCGTTTTTGGACATTTTCCAACGTCATTATCAATACCATCACCTTGGTTTTGTTCATAAGTTTAATCTTACTTTTCTATTACAAAGGAAAGAAGCAAAAGAGTGATACCAGAAAAATTATGAAGCGTCTAAAAGTGTCTATCCTATTTTTCATCTTCACCTGGTACATAGGTTTACTGGCTGCAGACTTGTTCGTGGCTCTCGGCTTCACGGGGCCTACATTARTTTTCATGATGAGCAATTTGGTATTTCACAGAGAGTCAAAAATATATTCGTTTCGTTATTTTTTTAGGTTTTCTTTGTCCTGATCTCCTATTCTCAATTCTTCTACGTTGTCATTTGGAGATCTCCAGAATACCGAAACGCATTCTTTGAAGCATGGAGTTGTATTCCTTGCTGCGCAGGTCTCAAGGAAAAACACATTATGTCTACAAAAATATCGGCCACTGCTCATTCCCATCAAGCAGCGTCAACAGTTTCTTCAACATAATAATTCAAATTCGAACATTTTATTTGGATCATTCAATACTTTTTTGACAATTTCTTCTAATCCCATTTTGACCCGTAATAAAAAAAACTTGAGAATAAATATGACATTTGTGAAGTTGAAGTGAGAAATCACTTCCATTCTAAAACATGAGTCTCTGAGAGGAGTACAAAAACAAGAAATGATACAAAAACTGTGAGAAGAGCTACTGCATGAGGCCATCGAACCTTGAATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>503 338 159</canonical_bands>
                <polymorphic_bands>662 338</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>390 180 171 108 81 41 16 7 6</canonical_bands>
                <polymorphic_bands>390 180 171 124 81 41 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAGCAAAAGAGTGATACCAG</pcr_primer_p1>
		<pcr_primer_p2>AATGACAACGTAGAAGAATTGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAGCAAAAGAGTGATACCAGAAAAATTATGAAGCGTCTAAAAGTGTCTATCCTATTTTTCATCTTCACCTGGTACATAGGTTTACTGGCTGCAGACTTGTTCGTGGCTCTCGGCTTCACGGGGCCTACATTAATTTTCATGATGAGCAATTTGGTATTTCACAGAGAGTCAAAAATATATTCGTTTCGTTATTTTTTTAGGTTTTCTTTGTCCTGATCTCCTATTCTCAATTCTTCTACGTTGTCATT</canonical_amplicon>
		<polymorphic_amplicon>AGAAGCAAAAGAGTGATACCAGAAAAATTATGAAGCGTCTAAAAGTGTCTATCCTATTTTTCATCTTCACCTGGTACATAGGTTTACTGGCTGCAGACTTGTTCGTGGCTCTCGGCTTCACGGGGCCTACATTARTTTTCATGATGAGCAATTTGGTATTTCACAGAGAGTCAAAAATATATTCGTTTCGTTATTTTTTTAGGTTTTCTTTGTCCTGATCTCCTATTCTCAATTCTTCTACGTTGTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17806</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>247883</contig_pos>
        <strand>+</strand>
        <context>TCTTTGTCCT[A/G]ATCTCCTATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAGTCAAAAATATATTCGTTTCGTTATTTTTTTAGGTTTTCTTTGTCCT</left_flank>
        <right_flank>ATCTCCTATTCTCAATTCTTCTACGTTGTCATTTGGAGATCTCCAGAATA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGACCCTCGACATTTTTATAATCGTTTTCTTTCCTGCATTCTATCAAACAGTGACTACCTGGAAGTACCTCACTGGGATGCTCACGATCCCTGTCGTCTACTCTTCTGGAATCGTAATCTGGGGATTCCTGGCTATGGACGATGAAATCGTGATGTTCTGTAACCCACCACTTGCTCTCTATCATACAGTATCCCGTTTTTGGACATTTTCCAACGTCATTATCAATACCATCACCTTGGTTTTGTTCATAAGTTTAATCTTACTTTTCTATTACAAAGGAAAGAAGCAAAAGAGTGATACCAGAAAAATTATGAAGCGTCTAAAAGTGTCTATCCTATTTTTCATCTTCACCTGGTACATAGGTTTACTGGCTGCAGACTTGTTCGTGGCTCTCGGCTTCACGGGGCCTACATTAATTTTCATGATGAGCAATTTGGTATTTCACAGAGAGTCAAAAATATATTCGTTTCGTTATTTTTTTAGGTTTTCTTTGTCCTGATCTCCTATTCTCAATTCTTCTACGTTGTCATTTGGAGATCTCCAGAATACCGAAACGCATTCTTTGAAGCATGGAGTTGTATTCCTTGCTGCGCAGGTCTCAAGGAAAAACACATTATGTCTACAAAAATATCGGCCACTGCTCATTCCCATCAAGCAGCGTCAACAGTTTCTTCAACATAATAATTCAAATTCGAACATTTTATTTGGATCATTCAATACTTTTTTGACAATTTCTTCTAATCCCATTTTGACCCGTAATAAAAAAAACTTGAGAATAAATATGACATTTGTGAAGTTGAAGTGAGAAATCACTTCCATTCTAAAACATGAGTCTCTGAGAGGAGTACAAAAACAAGAAATGATACAAAAACTGTGAGAAGAGCTACTGCATGAGGCCATCGAACCTTGAATTTTTGAACAAAGATTGCTGAAAATTCTATATTTTTTGAAGGGTTGAAGATTTTCATGGCTTACCAATCAGAGAAGTAATTAGAGAA</canonical>
            <polymorphic>ATGACCCTCGACATTTTTATAATCGTTTTCTTTCCTGCATTCTATCAAACAGTGACTACCTGGAAGTACCTCACTGGGATGCTCACGATCCCTGTCGTCTACTCTTCTGGAATCGTAATCTGGGGATTCCTGGCTATGGACGATGAAATCGTGATGTTCTGTAACCCACCACTTGCTCTCTATCATACAGTATCCCGTTTTTGGACATTTTCCAACGTCATTATCAATACCATCACCTTGGTTTTGTTCATAAGTTTAATCTTACTTTTCTATTACAAAGGAAAGAAGCAAAAGAGTGATACCAGAAAAATTATGAAGCGTCTAAAAGTGTCTATCCTATTTTTCATCTTCACCTGGTACATAGGTTTACTGGCTGCAGACTTGTTCGTGGCTCTCGGCTTCACGGGGCCTACATTAATTTTCATGATGAGCAATTTGGTATTTCACAGAGAGTCAAAAATATATTCGTTTCGTTATTTTTTTAGGTTTTCTTTGTCCTRATCTCCTATTCTCAATTCTTCTACGTTGTCATTTGGAGATCTCCAGAATACCGAAACGCATTCTTTGAAGCATGGAGTTGTATTCCTTGCTGCGCAGGTCTCAAGGAAAAACACATTATGTCTACAAAAATATCGGCCACTGCTCATTCCCATCAAGCAGCGTCAACAGTTTCTTCAACATAATAATTCAAATTCGAACATTTTATTTGGATCATTCAATACTTTTTTGACAATTTCTTCTAATCCCATTTTGACCCGTAATAAAAAAAACTTGAGAATAAATATGACATTTGTGAAGTTGAAGTGAGAAATCACTTCCATTCTAAAACATGAGTCTCTGAGAGGAGTACAAAAACAAGAAATGATACAAAAACTGTGAGAAGAGCTACTGCATGAGGCCATCGAACCTTGAATTTTTGAACAAAGATTGCTGAAAATTCTATATTTTTTGAAGGGTTGAAGATTTTCATGGCTTACCAATCAGAGAAGTAATTAGAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>413 291 172 86 38</canonical_bands>
                <polymorphic_bands>451 291 172 86</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>457 273 84 74 46 43 23</canonical_bands>
                <polymorphic_bands>457 273 120 84 43 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTTTTCATCTTCACCTGGTA</pcr_primer_p1>
		<pcr_primer_p2>GAATACAACTCCATGCTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTATTTTTCATCTTCACCTGGTACATAGGTTTACTGGCTGCAGACTTGTTCGTGGCTCTCGGCTTCACGGGGCCTACATTAATTTTCATGATGAGCAATTTGGTATTTCACAGAGAGTCAAAAATATATTCGTTTCGTTATTTTTTTAGGTTTTCTTTGTCCTGATCTCCTATTCTCAATTCTTCTACGTTGTCATTTGGAGATCTCCAGAATACCGAAACGCATTCTTTGAAGCATGGAGTTGTATTC</canonical_amplicon>
		<polymorphic_amplicon>CTATTTTTCATCTTCACCTGGTACATAGGTTTACTGGCTGCAGACTTGTTCGTGGCTCTCGGCTTCACGGGGCCTACATTAATTTTCATGATGAGCAATTTGGTATTTCACAGAGAGTCAAAAATATATTCGTTTCGTTATTTTTTTAGGTTTTCTTTGTCCTRATCTCCTATTCTCAATTCTTCTACGTTGTCATTTGGAGATCTCCAGAATACCGAAACGCATTCTTTGAAGCATGGAGTTGTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17807</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>249796</contig_pos>
        <strand>+</strand>
        <context>AAACCAAATA[A/G]CAAGGAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACTGAGAGGCATCCAAATCTCAACATGATTGAAGTTTATAAACCAAATA</left_flank>
        <right_flank>CAAGGAAAATGTCAGCCACTATGAAGAAAAGGATATCACGGATAGTGGCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACCAATCCATCTTCCAAGGAGTCAGTTTTATCATCCAGGAAGTTTTTAACATTGTTCGTCATAGCAGAGACTGAAATTAATTTATTGAGTTACTATCAATTAGATAGGGAAGAAATCAATCAAATTAGCTATACGAGGAAAGTTCAAACTCACTTTTGCTATTTGCGAAAAAGTTTATAACATGTGCATAGTCCATAACAAATCCAATAACAGTGGAAATTTTATGAGTGTGATGATTCATCTGACTTTCCTTTCTTTCATCTGAAAAAAATGGATTTTGTGAGAATGAAAATATCAATTGTCTTACTTTCAGCCTTCAAATGTCTAGCTCGCTTCCGTCTTTTGGAATTTATTCTCATCAGAATCACAGATACTACATAGGCGGCGTAGAGACCGAGAAATGCTAAAATAACGAAAAATTAAATGAATCCCAAAACTTTTGGATCATACTGAGAGGCATCCAAATCTCAACATGATTGAAGTTTATAAACCAAATAACAAGGAAAATGTCAGCCACTATGAAGAAAAGGATATCACGGATAGTGGCAAGAACCTGAACTCATTTCAAATTTCCAAAAAAAATCCAGAGAGCAACTACTTACAGCAATTTTGAAAGACTTTGTTAGAATAATGGCTGACAAAACTACAGTAGTGACGAATATTCCTCCTCCTAGAATGTCTCCAATAGCCAAATCAGCTTTAGGTTTGGGAGTTGTGATAACTGAAGCTATACTTCCGAACACATCAGGTGCACCGTTTCCAAATGCCAAGAATGTTACTCCCTGGAATATATCGAAATGATAATAATTTCGATTAAAAAAAACAACATACCGCAATAGATTCACTCATCTTCAAATGTCGTACAATTCCAGCGATGGACGGGGAAAAGAAGTCATCAGCCACAACTGTCATCACAATAAACAAAAAGAACAAGTAGATTATACTGACAATCAACAAATAACCTGTAAAATAGACAAGATGATTAGAATAGTTTAATT</canonical>
            <polymorphic>CAACCAATCCATCTTCCAAGGAGTCAGTTTTATCATCCAGGAAGTTTTTAACATTGTTCGTCATAGCAGAGACTGAAATTAATTTATTGAGTTACTATCAATTAGATAGGGAAGAAATCAATCAAATTAGCTATACGAGGAAAGTTCAAACTCACTTTTGCTATTTGCGAAAAAGTTTATAACATGTGCATAGTCCATAACAAATCCAATAACAGTGGAAATTTTATGAGTGTGATGATTCATCTGACTTTCCTTTCTTTCATCTGAAAAAAATGGATTTTGTGAGAATGAAAATATCAATTGTCTTACTTTCAGCCTTCAAATGTCTAGCTCGCTTCCGTCTTTTGGAATTTATTCTCATCAGAATCACAGATACTACATAGGCGGCGTAGAGACCGAGAAATGCTAAAATAACGAAAAATTAAATGAATCCCAAAACTTTTGGATCATACTGAGAGGCATCCAAATCTCAACATGATTGAAGTTTATAAACCAAATARCAAGGAAAATGTCAGCCACTATGAAGAAAAGGATATCACGGATAGTGGCAAGAACCTGAACTCATTTCAAATTTCCAAAAAAAATCCAGAGAGCAACTACTTACAGCAATTTTGAAAGACTTTGTTAGAATAATGGCTGACAAAACTACAGTAGTGACGAATATTCCTCCTCCTAGAATGTCTCCAATAGCCAAATCAGCTTTAGGTTTGGGAGTTGTGATAACTGAAGCTATACTTCCGAACACATCAGGTGCACCGTTTCCAAATGCCAAGAATGTTACTCCCTGGAATATATCGAAATGATAATAATTTCGATTAAAAAAAACAACATACCGCAATAGATTCACTCATCTTCAAATGTCGTACAATTCCAGCGATGGACGGGGAAAAGAAGTCATCAGCCACAACTGTCATCACAATAAACAAAAAGAACAAGTAGATTATACTGACAATCAACAAATAACCTGTAAAATAGACAAGATGATTAGAATAGTTTAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAATGCTAAAATAACGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGTTTTGTCAGCCATTATTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGAAATGCTAAAATAACGAAAAATTAAATGAATCCCAAAACTTTTGGATCATACTGAGAGGCATCCAAATCTCAACATGATTGAAGTTTATAAACCAAATAACAAGGAAAATGTCAGCCACTATGAAGAAAAGGATATCACGGATAGTGGCAAGAACCTGAACTCATTTCAAATTTCCAAAAAAAATCCAGAGAGCAACTACTTACAGCAATTTTGAAAGACTTTGTTAGAATAATGGCTGACAAAACT</canonical_amplicon>
		<polymorphic_amplicon>GAGAAATGCTAAAATAACGAAAAATTAAATGAATCCCAAAACTTTTGGATCATACTGAGAGGCATCCAAATCTCAACATGATTGAAGTTTATAAACCAAATARCAAGGAAAATGTCAGCCACTATGAAGAAAAGGATATCACGGATAGTGGCAAGAACCTGAACTCATTTCAAATTTCCAAAAAAAATCCAGAGAGCAACTACTTACAGCAATTTTGAAAGACTTTGTTAGAATAATGGCTGACAAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17808</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>249781</contig_pos>
        <strand>+</strand>
        <context>ATGATTGAAG[C/T]TTATAAACCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAACTTTTGGATCATACTGAGAGGCATCCAAATCTCAACATGATTGAAG</left_flank>
        <right_flank>TTATAAACCAAATAACAAGGAAAATGTCAGCCACTATGAAGAAAAGGATA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCACTCTGTTCATCAACCAATCCATCTTCCAAGGAGTCAGTTTTATCATCCAGGAAGTTTTTAACATTGTTCGTCATAGCAGAGACTGAAATTAATTTATTGAGTTACTATCAATTAGATAGGGAAGAAATCAATCAAATTAGCTATACGAGGAAAGTTCAAACTCACTTTTGCTATTTGCGAAAAAGTTTATAACATGTGCATAGTCCATAACAAATCCAATAACAGTGGAAATTTTATGAGTGTGATGATTCATCTGACTTTCCTTTCTTTCATCTGAAAAAAATGGATTTTGTGAGAATGAAAATATCAATTGTCTTACTTTCAGCCTTCAAATGTCTAGCTCGCTTCCGTCTTTTGGAATTTATTCTCATCAGAATCACAGATACTACATAGGCGGCGTAGAGACCGAGAAATGCTAAAATAACGAAAAATTAAATGAATCCCAAAACTTTTGGATCATACTGAGAGGCATCCAAATCTCAACATGATTGAAGTTTATAAACCAAATAACAAGGAAAATGTCAGCCACTATGAAGAAAAGGATATCACGGATAGTGGCAAGAACCTGAACTCATTTCAAATTTCCAAAAAAAATCCAGAGAGCAACTACTTACAGCAATTTTGAAAGACTTTGTTAGAATAATGGCTGACAAAACTACAGTAGTGACGAATATTCCTCCTCCTAGAATGTCTCCAATAGCCAAATCAGCTTTAGGTTTGGGAGTTGTGATAACTGAAGCTATACTTCCGAACACATCAGGTGCACCGTTTCCAAATGCCAAGAATGTTACTCCCTGGAATATATCGAAATGATAATAATTTCGATTAAAAAAAACAACATACCGCAATAGATTCACTCATCTTCAAATGTCGTACAATTCCAGCGATGGACGGGGAAAAGAAGTCATCAGCCACAACTGTCATCACAATAAACAAAAAGAACAAGTAGATTATACTGACAATCAACAAATAACCTGTAAAATAGACAAGATGAT</canonical>
            <polymorphic>CATCACTCTGTTCATCAACCAATCCATCTTCCAAGGAGTCAGTTTTATCATCCAGGAAGTTTTTAACATTGTTCGTCATAGCAGAGACTGAAATTAATTTATTGAGTTACTATCAATTAGATAGGGAAGAAATCAATCAAATTAGCTATACGAGGAAAGTTCAAACTCACTTTTGCTATTTGCGAAAAAGTTTATAACATGTGCATAGTCCATAACAAATCCAATAACAGTGGAAATTTTATGAGTGTGATGATTCATCTGACTTTCCTTTCTTTCATCTGAAAAAAATGGATTTTGTGAGAATGAAAATATCAATTGTCTTACTTTCAGCCTTCAAATGTCTAGCTCGCTTCCGTCTTTTGGAATTTATTCTCATCAGAATCACAGATACTACATAGGCGGCGTAGAGACCGAGAAATGCTAAAATAACGAAAAATTAAATGAATCCCAAAACTTTTGGATCATACTGAGAGGCATCCAAATCTCAACATGATTGAAGYTTATAAACCAAATAACAAGGAAAATGTCAGCCACTATGAAGAAAAGGATATCACGGATAGTGGCAAGAACCTGAACTCATTTCAAATTTCCAAAAAAAATCCAGAGAGCAACTACTTACAGCAATTTTGAAAGACTTTGTTAGAATAATGGCTGACAAAACTACAGTAGTGACGAATATTCCTCCTCCTAGAATGTCTCCAATAGCCAAATCAGCTTTAGGTTTGGGAGTTGTGATAACTGAAGCTATACTTCCGAACACATCAGGTGCACCGTTTCCAAATGCCAAGAATGTTACTCCCTGGAATATATCGAAATGATAATAATTTCGATTAAAAAAAACAACATACCGCAATAGATTCACTCATCTTCAAATGTCGTACAATTCCAGCGATGGACGGGGAAAAGAAGTCATCAGCCACAACTGTCATCACAATAAACAAAAAGAACAAGTAGATTATACTGACAATCAACAAATAACCTGTAAAATAGACAAGATGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAATGCTAAAATAACGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGTTTTGTCAGCCATTATTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGAAATGCTAAAATAACGAAAAATTAAATGAATCCCAAAACTTTTGGATCATACTGAGAGGCATCCAAATCTCAACATGATTGAAGTTTATAAACCAAATAACAAGGAAAATGTCAGCCACTATGAAGAAAAGGATATCACGGATAGTGGCAAGAACCTGAACTCATTTCAAATTTCCAAAAAAAATCCAGAGAGCAACTACTTACAGCAATTTTGAAAGACTTTGTTAGAATAATGGCTGACAAAACT</canonical_amplicon>
		<polymorphic_amplicon>GAGAAATGCTAAAATAACGAAAAATTAAATGAATCCCAAAACTTTTGGATCATACTGAGAGGCATCCAAATCTCAACATGATTGAAGYTTATAAACCAAATAACAAGGAAAATGTCAGCCACTATGAAGAAAAGGATATCACGGATAGTGGCAAGAACCTGAACTCATTTCAAATTTCCAAAAAAAATCCAGAGAGCAACTACTTACAGCAATTTTGAAAGACTTTGTTAGAATAATGGCTGACAAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17809</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>249570</contig_pos>
        <strand>+</strand>
        <context>CTGAAAAAAA[G/T]GGATTTTGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTATGAGTGTGATGATTCATCTGACTTTCCTTTCTTTCATCTGAAAAAAA</left_flank>
        <right_flank>GGATTTTGTGAGAATGAAAATATCAATTGTCTTACTTTCAGCCTTCAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGAGATCGCTCTCGAAAAATAATTCATCTCCATAAGTTCGCCTTTCCCTGGCCATGGCCTCAGGTGATTTGCAACATCTCTAACCCAATCCCAAGACTTCCAAGTCTTCGGTCGGATTTCTTCGACATCCGTGAATGCTAGACTAGCTTCATCATAAGACTTGTAGACGTGACGATGAGCAATATGGAATTCAGCCTCTTCTCCCTCGTCATCACTCTGTTCATCAACCAATCCATCTTCCAAGGAGTCAGTTTTATCATCCAGGAAGTTTTTAACATTGTTCGTCATAGCAGAGACTGAAATTAATTTATTGAGTTACTATCAATTAGATAGGGAAGAAATCAATCAAATTAGCTATACGAGGAAAGTTCAAACTCACTTTTGCTATTTGCGAAAAAGTTTATAACATGTGCATAGTCCATAACAAATCCAATAACAGTGGAAATTTTATGAGTGTGATGATTCATCTGACTTTCCTTTCTTTCATCTGAAAAAAATGGATTTTGTGAGAATGAAAATATCAATTGTCTTACTTTCAGCCTTCAAATGTCTAGCTCGCTTCCGTCTTTTGGAATTTATTCTCATCAGAATCACAGATACTACATAGGCGGCGTAGAGACCGAGAAATGCTAAAATAACGAAAAATTAAATGAATCCCAAAACTTTTGGATCATACTGAGAGGCATCCAAATCTCAACATGATTGAAGTTTATAAACCAAATAACAAGGAAAATGTCAGCCACTATGAAGAAAAGGATATCACGGATAGTGGCAAGAACCTGAACTCATTTCAAATTTCCAAAAAAAATCCAGAGAGCAACTACTTACAGCAATTTTGAAAGACTTTGTTAGAATAATGGCTGACAAAACTACAGTAGTGACGAATATTCCTCCTCCTAGAATGTCTCCAATAGCCAAATCAGCTTTAGGTTTGGGAGTTGTGATAACTGAAGCTATACTTCCGAACACATCAGGTGCACCGTTTCCAAATGCCAAGA</canonical>
            <polymorphic>ATGGAGATCGCTCTCGAAAAATAATTCATCTCCATAAGTTCGCCTTTCCCTGGCCATGGCCTCAGGTGATTTGCAACATCTCTAACCCAATCCCAAGACTTCCAAGTCTTCGGTCGGATTTCTTCGACATCCGTGAATGCTAGACTAGCTTCATCATAAGACTTGTAGACGTGACGATGAGCAATATGGAATTCAGCCTCTTCTCCCTCGTCATCACTCTGTTCATCAACCAATCCATCTTCCAAGGAGTCAGTTTTATCATCCAGGAAGTTTTTAACATTGTTCGTCATAGCAGAGACTGAAATTAATTTATTGAGTTACTATCAATTAGATAGGGAAGAAATCAATCAAATTAGCTATACGAGGAAAGTTCAAACTCACTTTTGCTATTTGCGAAAAAGTTTATAACATGTGCATAGTCCATAACAAATCCAATAACAGTGGAAATTTTATGAGTGTGATGATTCATCTGACTTTCCTTTCTTTCATCTGAAAAAAAKGGATTTTGTGAGAATGAAAATATCAATTGTCTTACTTTCAGCCTTCAAATGTCTAGCTCGCTTCCGTCTTTTGGAATTTATTCTCATCAGAATCACAGATACTACATAGGCGGCGTAGAGACCGAGAAATGCTAAAATAACGAAAAATTAAATGAATCCCAAAACTTTTGGATCATACTGAGAGGCATCCAAATCTCAACATGATTGAAGTTTATAAACCAAATAACAAGGAAAATGTCAGCCACTATGAAGAAAAGGATATCACGGATAGTGGCAAGAACCTGAACTCATTTCAAATTTCCAAAAAAAATCCAGAGAGCAACTACTTACAGCAATTTTGAAAGACTTTGTTAGAATAATGGCTGACAAAACTACAGTAGTGACGAATATTCCTCCTCCTAGAATGTCTCCAATAGCCAAATCAGCTTTAGGTTTGGGAGTTGTGATAACTGAAGCTATACTTCCGAACACATCAGGTGCACCGTTTCCAAATGCCAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCCATAACAAATCCAATAACA</pcr_primer_p1>
		<pcr_primer_p2>AGTTTTGGGATTCATTTAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGTCCATAACAAATCCAATAACAGTGGAAATTTTATGAGTGTGATGATTCATCTGACTTTCCTTTCTTTCATCTGAAAAAAATGGATTTTGTGAGAATGAAAATATCAATTGTCTTACTTTCAGCCTTCAAATGTCTAGCTCGCTTCCGTCTTTTGGAATTTATTCTCATCAGAATCACAGATACTACATAGGCGGCGTAGAGACCGAGAAATGCTAAAATAACGAAAAATTAAATGAATCCCAAAACT</canonical_amplicon>
		<polymorphic_amplicon>AGTCCATAACAAATCCAATAACAGTGGAAATTTTATGAGTGTGATGATTCATCTGACTTTCCTTTCTTTCATCTGAAAAAAAKGGATTTTGTGAGAATGAAAATATCAATTGTCTTACTTTCAGCCTTCAAATGTCTAGCTCGCTTCCGTCTTTTGGAATTTATTCTCATCAGAATCACAGATACTACATAGGCGGCGTAGAGACCGAGAAATGCTAAAATAACGAAAAATTAAATGAATCCCAAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17810</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>249430</contig_pos>
        <strand>+</strand>
        <context>AAAWTAGCTA[A/T]ACGAGGAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTATTGAGTTACTATCAATTAGATAGGGAAGAAATCAATCAAATTAGCTA</left_flank>
        <right_flank>ACGAGGAAAGTTCAAACTCACTTTTGCTATTTGCGAAAAAGTTTATAACA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGATTTCGCCGAAATTTGAACAGCAAATAAGGCAAGTTGCACTGAACAGAAACAATGAATGATGAGAATCGGTTTTGACCATGGCATCTCATTCGATGGAATTGTGAGTTTAAACAAGAAAGTTGGGGGAATTGCAATAATGGAGATCGCTCTCGAAAAATAATTCATCTCCATAAGTTCGCCTTTCCCTGGCCATGGCCTCAGGTGATTTGCAACATCTCTAACCCAATCCCAAGACTTCCAAGTCTTCGGTCGGATTTCTTCGACATCCGTGAATGCTAGACTAGCTTCATCATAAGACTTGTAGACGTGACGATGAGCAATATGGAATTCAGCCTCTTCTCCCTCGTCATCACTCTGTTCATCAACCAATCCATCTTCCAAGGAGTCAGTTTTATCATCCAGGAAGTTTTTAACATTGTTCGTCATAGCAGAGACTGAAATTAATTTATTGAGTTACTATCAATTAGATAGGGAAGAAATCAATCAAATTAGCTATACGAGGAAAGTTCAAACTCACTTTTGCTATTTGCGAAAAAGTTTATAACATGTGCATAGTCCATAACAAATCCAATAACAGTGGAAATTTTATGAGTGTGATGATTCATCTGACTTTCCTTTCTTTCATCTGAAAAAAATGGATTTTGTGAGAATGAAAATATCAATTGTCTTACTTTCAGCCTTCAAATGTCTAGCTCGCTTCCGTCTTTTGGAATTTATTCTCATCAGAATCACAGATACTACATAGGCGGCGTAGAGACCGAGAAATGCTAAAATAACGAAAAATTAAATGAATCCCAAAACTTTTGGATCATACTGAGAGGCATCCAAATCTCAACATGATTGAAGTTTATAAACCAAATAACAAGGAAAATGTCAGCCACTATGAAGAAAAGGATATCACGGATAGTGGCAAGAACCTGAACTCATTTCAAATTTCCAAAAAAAATCCAGAGAGCAACTACTTACAGCAATTTTGAAAGACTTTGTTAGAATAAT</canonical>
            <polymorphic>GAGATTTCGCCGAAATTTGAACAGCAAATAAGGCAAGTTGCACTGAACAGAAACAATGAATGATGAGAATCGGTTTTGACCATGGCATCTCATTCGATGGAATTGTGAGTTTAAACAAGAAAGTTGGGGGAATTGCAATAATGGAGATCGCTCTCGAAAAATAATTCATCTCCATAAGTTCGCCTTTCCCTGGCCATGGCCTCAGGTGATTTGCAACATCTCTAACCCAATCCCAAGACTTCCAAGTCTTCGGTCGGATTTCTTCGACATCCGTGAATGCTAGACTAGCTTCATCATAAGACTTGTAGACGTGACGATGAGCAATATGGAATTCAGCCTCTTCTCCCTCGTCATCACTCTGTTCATCAACCAATCCATCTTCCAAGGAGTCAGTTTTATCATCCAGGAAGTTTTTAACATTGTTCGTCATAGCAGAGACTGAAATTAATTTATTGAGTTACTATCAATTAGATAGGGAAGAAATCAATCAAATTAGCTAWACGAGGAAAGTTCAAACTCACTTTTGCTATTTGCGAAAAAGTTTATAACATGTGCATAGTCCATAACAAATCCAATAACAGTGGAAATTTTATGAGTGTGATGATTCATCTGACTTTCCTTTCTTTCATCTGAAAAAAATGGATTTTGTGAGAATGAAAATATCAATTGTCTTACTTTCAGCCTTCAAATGTCTAGCTCGCTTCCGTCTTTTGGAATTTATTCTCATCAGAATCACAGATACTACATAGGCGGCGTAGAGACCGAGAAATGCTAAAATAACGAAAAATTAAATGAATCCCAAAACTTTTGGATCATACTGAGAGGCATCCAAATCTCAACATGATTGAAGTTTATAAACCAAATAACAAGGAAAATGTCAGCCACTATGAAGAAAAGGATATCACGGATAGTGGCAAGAACCTGAACTCATTTCAAATTTCCAAAAAAAATCCAGAGAGCAACTACTTACAGCAATTTTGAAAGACTTTGTTAGAATAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTTCCAAGGAGTCAGTTTTAT</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAAGGAAAGTCAGATGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTTCCAAGGAGTCAGTTTTATCATCCAGGAAGTTTTTAACATTGTTCGTCATAGCAGAGACTGAAATTAATTTATTGAGTTACTATCAATTAGATAGGGAAGAAATCAATCAAATTAGCTATACGAGGAAAGTTCAAACTCACTTTTGCTATTTGCGAAAAAGTTTATAACATGTGCATAGTCCATAACAAATCCAATAACAGTGGAAATTTTATGAGTGTGATGATTCATCTGACTTTCCTTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>ATCTTCCAAGGAGTCAGTTTTATCATCCAGGAAGTTTTTAACATTGTTCGTCATAGCAGAGACTGAAATTAATTTATTGAGTTACTATCAATTAGATAGGGAAGAAATCAATCAAATTAGCTAWACGAGGAAAGTTCAAACTCACTTTTGCTATTTGCGAAAAAGTTTATAACATGTGCATAGTCCATAACAAATCCAATAACAGTGGAAATTTTATGAGTGTGATGATTCATCTGACTTTCCTTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17811</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>249423</contig_pos>
        <strand>+</strand>
        <context>ATCAATCAAA[A/T]TAGCTAWACG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTAATTTATTGAGTTACTATCAATTAGATAGGGAAGAAATCAATCAAA</left_flank>
        <right_flank>TAGCTATACGAGGAAAGTTCAAACTCACTTTTGCTATTTGCGAAAAAGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAACGGAGATTTCGCCGAAATTTGAACAGCAAATAAGGCAAGTTGCACTGAACAGAAACAATGAATGATGAGAATCGGTTTTGACCATGGCATCTCATTCGATGGAATTGTGAGTTTAAACAAGAAAGTTGGGGGAATTGCAATAATGGAGATCGCTCTCGAAAAATAATTCATCTCCATAAGTTCGCCTTTCCCTGGCCATGGCCTCAGGTGATTTGCAACATCTCTAACCCAATCCCAAGACTTCCAAGTCTTCGGTCGGATTTCTTCGACATCCGTGAATGCTAGACTAGCTTCATCATAAGACTTGTAGACGTGACGATGAGCAATATGGAATTCAGCCTCTTCTCCCTCGTCATCACTCTGTTCATCAACCAATCCATCTTCCAAGGAGTCAGTTTTATCATCCAGGAAGTTTTTAACATTGTTCGTCATAGCAGAGACTGAAATTAATTTATTGAGTTACTATCAATTAGATAGGGAAGAAATCAATCAAATTAGCTATACGAGGAAAGTTCAAACTCACTTTTGCTATTTGCGAAAAAGTTTATAACATGTGCATAGTCCATAACAAATCCAATAACAGTGGAAATTTTATGAGTGTGATGATTCATCTGACTTTCCTTTCTTTCATCTGAAAAAAATGGATTTTGTGAGAATGAAAATATCAATTGTCTTACTTTCAGCCTTCAAATGTCTAGCTCGCTTCCGTCTTTTGGAATTTATTCTCATCAGAATCACAGATACTACATAGGCGGCGTAGAGACCGAGAAATGCTAAAATAACGAAAAATTAAATGAATCCCAAAACTTTTGGATCATACTGAGAGGCATCCAAATCTCAACATGATTGAAGTTTATAAACCAAATAACAAGGAAAATGTCAGCCACTATGAAGAAAAGGATATCACGGATAGTGGCAAGAACCTGAACTCATTTCAAATTTCCAAAAAAAATCCAGAGAGCAACTACTTACAGCAATTTTGAAAGACTTTGTTA</canonical>
            <polymorphic>TGGAACGGAGATTTCGCCGAAATTTGAACAGCAAATAAGGCAAGTTGCACTGAACAGAAACAATGAATGATGAGAATCGGTTTTGACCATGGCATCTCATTCGATGGAATTGTGAGTTTAAACAAGAAAGTTGGGGGAATTGCAATAATGGAGATCGCTCTCGAAAAATAATTCATCTCCATAAGTTCGCCTTTCCCTGGCCATGGCCTCAGGTGATTTGCAACATCTCTAACCCAATCCCAAGACTTCCAAGTCTTCGGTCGGATTTCTTCGACATCCGTGAATGCTAGACTAGCTTCATCATAAGACTTGTAGACGTGACGATGAGCAATATGGAATTCAGCCTCTTCTCCCTCGTCATCACTCTGTTCATCAACCAATCCATCTTCCAAGGAGTCAGTTTTATCATCCAGGAAGTTTTTAACATTGTTCGTCATAGCAGAGACTGAAATTAATTTATTGAGTTACTATCAATTAGATAGGGAAGAAATCAATCAAAWTAGCTATACGAGGAAAGTTCAAACTCACTTTTGCTATTTGCGAAAAAGTTTATAACATGTGCATAGTCCATAACAAATCCAATAACAGTGGAAATTTTATGAGTGTGATGATTCATCTGACTTTCCTTTCTTTCATCTGAAAAAAATGGATTTTGTGAGAATGAAAATATCAATTGTCTTACTTTCAGCCTTCAAATGTCTAGCTCGCTTCCGTCTTTTGGAATTTATTCTCATCAGAATCACAGATACTACATAGGCGGCGTAGAGACCGAGAAATGCTAAAATAACGAAAAATTAAATGAATCCCAAAACTTTTGGATCATACTGAGAGGCATCCAAATCTCAACATGATTGAAGTTTATAAACCAAATAACAAGGAAAATGTCAGCCACTATGAAGAAAAGGATATCACGGATAGTGGCAAGAACCTGAACTCATTTCAAATTTCCAAAAAAAATCCAGAGAGCAACTACTTACAGCAATTTTGAAAGACTTTGTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>167 150 113 95 87 79 71 50 38 32 30 25 20 20 19 4</canonical_bands>
                <polymorphic_bands>167 150 120 113 87 79 71 50 38 32 30 20 20 19 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTTCCAAGGAGTCAGTTTTAT</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAAGGAAAGTCAGATGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTTCCAAGGAGTCAGTTTTATCATCCAGGAAGTTTTTAACATTGTTCGTCATAGCAGAGACTGAAATTAATTTATTGAGTTACTATCAATTAGATAGGGAAGAAATCAATCAAATTAGCTATACGAGGAAAGTTCAAACTCACTTTTGCTATTTGCGAAAAAGTTTATAACATGTGCATAGTCCATAACAAATCCAATAACAGTGGAAATTTTATGAGTGTGATGATTCATCTGACTTTCCTTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>ATCTTCCAAGGAGTCAGTTTTATCATCCAGGAAGTTTTTAACATTGTTCGTCATAGCAGAGACTGAAATTAATTTATTGAGTTACTATCAATTAGATAGGGAAGAAATCAATCAAAWTAGCTATACGAGGAAAGTTCAAACTCACTTTTGCTATTTGCGAAAAAGTTTATAACATGTGCATAGTCCATAACAAATCCAATAACAGTGGAAATTTTATGAGTGTGATGATTCATCTGACTTTCCTTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17812</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>249388</contig_pos>
        <strand>+</strand>
        <context>ATTTATTGAG[C/T]TACTATCAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGTTTTTAACATTGTTCGTCATAGCAGAGACTGAAATTAATTTATTGAG</left_flank>
        <right_flank>TACTATCAATTAGATAGGGAAGAAATCAATCAAATTAGCTATACGAGGAA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAGAAGACCATAAATCCAGAGTCCGGGACTTCCATGGAACGGAGATTTCGCCGAAATTTGAACAGCAAATAAGGCAAGTTGCACTGAACAGAAACAATGAATGATGAGAATCGGTTTTGACCATGGCATCTCATTCGATGGAATTGTGAGTTTAAACAAGAAAGTTGGGGGAATTGCAATAATGGAGATCGCTCTCGAAAAATAATTCATCTCCATAAGTTCGCCTTTCCCTGGCCATGGCCTCAGGTGATTTGCAACATCTCTAACCCAATCCCAAGACTTCCAAGTCTTCGGTCGGATTTCTTCGACATCCGTGAATGCTAGACTAGCTTCATCATAAGACTTGTAGACGTGACGATGAGCAATATGGAATTCAGCCTCTTCTCCCTCGTCATCACTCTGTTCATCAACCAATCCATCTTCCAAGGAGTCAGTTTTATCATCCAGGAAGTTTTTAACATTGTTCGTCATAGCAGAGACTGAAATTAATTTATTGAGTTACTATCAATTAGATAGGGAAGAAATCAATCAAATTAGCTATACGAGGAAAGTTCAAACTCACTTTTGCTATTTGCGAAAAAGTTTATAACATGTGCATAGTCCATAACAAATCCAATAACAGTGGAAATTTTATGAGTGTGATGATTCATCTGACTTTCCTTTCTTTCATCTGAAAAAAATGGATTTTGTGAGAATGAAAATATCAATTGTCTTACTTTCAGCCTTCAAATGTCTAGCTCGCTTCCGTCTTTTGGAATTTATTCTCATCAGAATCACAGATACTACATAGGCGGCGTAGAGACCGAGAAATGCTAAAATAACGAAAAATTAAATGAATCCCAAAACTTTTGGATCATACTGAGAGGCATCCAAATCTCAACATGATTGAAGTTTATAAACCAAATAACAAGGAAAATGTCAGCCACTATGAAGAAAAGGATATCACGGATAGTGGCAAGAACCTGAACTCATTTCAAATTTCCAAAAAAAATCCAGAGA</canonical>
            <polymorphic>TAAGAAGACCATAAATCCAGAGTCCGGGACTTCCATGGAACGGAGATTTCGCCGAAATTTGAACAGCAAATAAGGCAAGTTGCACTGAACAGAAACAATGAATGATGAGAATCGGTTTTGACCATGGCATCTCATTCGATGGAATTGTGAGTTTAAACAAGAAAGTTGGGGGAATTGCAATAATGGAGATCGCTCTCGAAAAATAATTCATCTCCATAAGTTCGCCTTTCCCTGGCCATGGCCTCAGGTGATTTGCAACATCTCTAACCCAATCCCAAGACTTCCAAGTCTTCGGTCGGATTTCTTCGACATCCGTGAATGCTAGACTAGCTTCATCATAAGACTTGTAGACGTGACGATGAGCAATATGGAATTCAGCCTCTTCTCCCTCGTCATCACTCTGTTCATCAACCAATCCATCTTCCAAGGAGTCAGTTTTATCATCCAGGAAGTTTTTAACATTGTTCGTCATAGCAGAGACTGAAATTAATTTATTGAGYTACTATCAATTAGATAGGGAAGAAATCAATCAAATTAGCTATACGAGGAAAGTTCAAACTCACTTTTGCTATTTGCGAAAAAGTTTATAACATGTGCATAGTCCATAACAAATCCAATAACAGTGGAAATTTTATGAGTGTGATGATTCATCTGACTTTCCTTTCTTTCATCTGAAAAAAATGGATTTTGTGAGAATGAAAATATCAATTGTCTTACTTTCAGCCTTCAAATGTCTAGCTCGCTTCCGTCTTTTGGAATTTATTCTCATCAGAATCACAGATACTACATAGGCGGCGTAGAGACCGAGAAATGCTAAAATAACGAAAAATTAAATGAATCCCAAAACTTTTGGATCATACTGAGAGGCATCCAAATCTCAACATGATTGAAGTTTATAAACCAAATAACAAGGAAAATGTCAGCCACTATGAAGAAAAGGATATCACGGATAGTGGCAAGAACCTGAACTCATTTCAAATTTCCAAAAAAAATCCAGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 352 146</canonical_bands>
                <polymorphic_bands>648 352</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTTCCAAGGAGTCAGTTTTAT</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAAGGAAAGTCAGATGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTTCCAAGGAGTCAGTTTTATCATCCAGGAAGTTTTTAACATTGTTCGTCATAGCAGAGACTGAAATTAATTTATTGAGTTACTATCAATTAGATAGGGAAGAAATCAATCAAATTAGCTATACGAGGAAAGTTCAAACTCACTTTTGCTATTTGCGAAAAAGTTTATAACATGTGCATAGTCCATAACAAATCCAATAACAGTGGAAATTTTATGAGTGTGATGATTCATCTGACTTTCCTTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>ATCTTCCAAGGAGTCAGTTTTATCATCCAGGAAGTTTTTAACATTGTTCGTCATAGCAGAGACTGAAATTAATTTATTGAGYTACTATCAATTAGATAGGGAAGAAATCAATCAAATTAGCTATACGAGGAAAGTTCAAACTCACTTTTGCTATTTGCGAAAAAGTTTATAACATGTGCATAGTCCATAACAAATCCAATAACAGTGGAAATTTTATGAGTGTGATGATTCATCTGACTTTCCTTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17813</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>262351</contig_pos>
        <strand>+</strand>
        <context>TTCAATTAGA[A/G]GGTTAGAGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATAATGAGTGGTTGTGAAGGACAGTCCTGACGGGACCTTTCAATTAGA</left_flank>
        <right_flank>GGTTAGAGGAGCCTTCTTATTTCTTCGGCTAGTTTCACGAAAACTTCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTCCTTGATAATGAAAAAATTAAACGGGAAACTACAGTTAGGGATTTAGGATTTATAATCACTGAGAGATTAGATTTCTCTAACCATTGGCAGAAAGCTATCAATAGGGCGAAATATGCTAGTTACTCTATTTTTAAAACTTATCATAGTAAGAACGTTAGATTAATGTCATTACTATATAAGACTTTTGTGCGACCGTATTTGGAATATGGAACGGTGGTAGCCAGCCCTTCTAAAAAACTGCTCATTGACAATATATGTGTATGGTGGCATAGATTCGTTCAATTATTAGACATGGAAGTATCGATAGGCCAAGGAATAGACAAAACGCGCGAATGTAGGACAAACGAATGAACGAGTCCGACTCGAATGGATCTGAAAACTTGAAAAAAAAATTTATTCACGGCATAGTTTAGAACATAGGAAACAGAATAGTGGGTACTCTGAAATAATGAGTGGTTGTGAAGGACAGTCCTGACGGGACCTTTCAATTAGAAGGTTAGAGGAGCCTTCTTATTTCTTCGGCTAGTTTCACGAAAACTTCAATTTTGAAAAATTGGTGAATTCTCGTTCACTATTGATGAAAAACCACAACTTTCATTAAAACTGGGAAAGTTTTTTAAGCCAATAAGAGTGCTTTAACAAAATTTGGTAAAGTTGTGGAATTCCCGGAATATTTTTCACAGAAATTTTTAATTTCAAACAACACACTTTGAAAAGTGCCCCTCTATTTCTGGGACCCAATCAAAAAACCAATCGTTCTAGTTCCGGCACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGT</canonical>
            <polymorphic>TATTTCCTTGATAATGAAAAAATTAAACGGGAAACTACAGTTAGGGATTTAGGATTTATAATCACTGAGAGATTAGATTTCTCTAACCATTGGCAGAAAGCTATCAATAGGGCGAAATATGCTAGTTACTCTATTTTTAAAACTTATCATAGTAAGAACGTTAGATTAATGTCATTACTATATAAGACTTTTGTGCGACCGTATTTGGAATATGGAACGGTGGTAGCCAGCCCTTCTAAAAAACTGCTCATTGACAATATATGTGTATGGTGGCATAGATTCGTTCAATTATTAGACATGGAAGTATCGATAGGCCAAGGAATAGACAAAACGCGCGAATGTAGGACAAACGAATGAACGAGTCCGACTCGAATGGATCTGAAAACTTGAAAAAAAAATTTATTCACGGCATAGTTTAGAACATAGGAAACAGAATAGTGGGTACTCTGAAATAATGAGTGGTTGTGAAGGACAGTCCTGACGGGACCTTTCAATTAGARGGTTAGAGGAGCCTTCTTATTTCTTCGGCTAGTTTCACGAAAACTTCAATTTTGAAAAATTGGTGAATTCTCGTTCACTATTGATGAAAAACCACAACTTTCATTAAAACTGGGAAAGTTTTTTAAGCCAATAAGAGTGCTTTAACAAAATTTGGTAAAGTTGTGGAATTCCCGGAATATTTTTCACAGAAATTTTTAATTTCAAACAACACACTTTGAAAAGTGCCCCTCTATTTCTGGGACCCAATCAAAAAACCAATCGTTCTAGTTCCGGCACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTATTCACGGCATAGTTTAGA</pcr_primer_p1>
		<pcr_primer_p2>GTTAAAGCACTCTTATTGGCTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTATTCACGGCATAGTTTAGAACATAGGAAACAGAATAGTGGGTACTCTGAAATAATGAGTGGTTGTGAAGGACAGTCCTGACGGGACCTTTCAATTAGAAGGTTAGAGGAGCCTTCTTATTTCTTCGGCTAGTTTCACGAAAACTTCAATTTTGAAAAATTGGTGAATTCTCGTTCACTATTGATGAAAAACCACAACTTTCATTAAAACTGGGAAAGTTTTTTAAGCCAATAAGAGTGCTTTAAC</canonical_amplicon>
		<polymorphic_amplicon>ATTTATTCACGGCATAGTTTAGAACATAGGAAACAGAATAGTGGGTACTCTGAAATAATGAGTGGTTGTGAAGGACAGTCCTGACGGGACCTTTCAATTAGARGGTTAGAGGAGCCTTCTTATTTCTTCGGCTAGTTTCACGAAAACTTCAATTTTGAAAAATTGGTGAATTCTCGTTCACTATTGATGAAAAACCACAACTTTCATTAAAACTGGGAAAGTTTTTTAAGCCAATAAGAGTGCTTTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17814</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>262409</contig_pos>
        <strand>+</strand>
        <context>AATTTTGAAA[A/G]ATTGGTGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAGCCTTCTTATTTCTTCGGCTAGTTTCACGAAAACTTCAATTTTGAAA</left_flank>
        <right_flank>ATTGGTGAATTCTCGTTCACTATTGATGAAAAACCACAACTTTCATTAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATCACTGAGAGATTAGATTTCTCTAACCATTGGCAGAAAGCTATCAATAGGGCGAAATATGCTAGTTACTCTATTTTTAAAACTTATCATAGTAAGAACGTTAGATTAATGTCATTACTATATAAGACTTTTGTGCGACCGTATTTGGAATATGGAACGGTGGTAGCCAGCCCTTCTAAAAAACTGCTCATTGACAATATATGTGTATGGTGGCATAGATTCGTTCAATTATTAGACATGGAAGTATCGATAGGCCAAGGAATAGACAAAACGCGCGAATGTAGGACAAACGAATGAACGAGTCCGACTCGAATGGATCTGAAAACTTGAAAAAAAAATTTATTCACGGCATAGTTTAGAACATAGGAAACAGAATAGTGGGTACTCTGAAATAATGAGTGGTTGTGAAGGACAGTCCTGACGGGACCTTTCAATTAGAAGGTTAGAGGAGCCTTCTTATTTCTTCGGCTAGTTTCACGAAAACTTCAATTTTGAAAAATTGGTGAATTCTCGTTCACTATTGATGAAAAACCACAACTTTCATTAAAACTGGGAAAGTTTTTTAAGCCAATAAGAGTGCTTTAACAAAATTTGGTAAAGTTGTGGAATTCCCGGAATATTTTTCACAGAAATTTTTAATTTCAAACAACACACTTTGAAAAGTGCCCCTCTATTTCTGGGACCCAATCAAAAAACCAATCGTTCTAGTTCCGGCACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGAAAGAGCCACGTGTGCAAGATACTAAACAGAAATG</canonical>
            <polymorphic>TAATCACTGAGAGATTAGATTTCTCTAACCATTGGCAGAAAGCTATCAATAGGGCGAAATATGCTAGTTACTCTATTTTTAAAACTTATCATAGTAAGAACGTTAGATTAATGTCATTACTATATAAGACTTTTGTGCGACCGTATTTGGAATATGGAACGGTGGTAGCCAGCCCTTCTAAAAAACTGCTCATTGACAATATATGTGTATGGTGGCATAGATTCGTTCAATTATTAGACATGGAAGTATCGATAGGCCAAGGAATAGACAAAACGCGCGAATGTAGGACAAACGAATGAACGAGTCCGACTCGAATGGATCTGAAAACTTGAAAAAAAAATTTATTCACGGCATAGTTTAGAACATAGGAAACAGAATAGTGGGTACTCTGAAATAATGAGTGGTTGTGAAGGACAGTCCTGACGGGACCTTTCAATTAGAAGGTTAGAGGAGCCTTCTTATTTCTTCGGCTAGTTTCACGAAAACTTCAATTTTGAAARATTGGTGAATTCTCGTTCACTATTGATGAAAAACCACAACTTTCATTAAAACTGGGAAAGTTTTTTAAGCCAATAAGAGTGCTTTAACAAAATTTGGTAAAGTTGTGGAATTCCCGGAATATTTTTCACAGAAATTTTTAATTTCAAACAACACACTTTGAAAAGTGCCCCTCTATTTCTGGGACCCAATCAAAAAACCAATCGTTCTAGTTCCGGCACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGAAAGAGCCACGTGTGCAAGATACTAAACAGAAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>228 110 104 96 92 90 83 75 55 24 18 10 8 7</canonical_bands>
                <polymorphic_bands>228 110 104 96 92 90 83 75 55 24 18 18 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTATTCACGGCATAGTTTAGA</pcr_primer_p1>
		<pcr_primer_p2>GTTAAAGCACTCTTATTGGCTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTATTCACGGCATAGTTTAGAACATAGGAAACAGAATAGTGGGTACTCTGAAATAATGAGTGGTTGTGAAGGACAGTCCTGACGGGACCTTTCAATTAGAAGGTTAGAGGAGCCTTCTTATTTCTTCGGCTAGTTTCACGAAAACTTCAATTTTGAAAAATTGGTGAATTCTCGTTCACTATTGATGAAAAACCACAACTTTCATTAAAACTGGGAAAGTTTTTTAAGCCAATAAGAGTGCTTTAAC</canonical_amplicon>
		<polymorphic_amplicon>ATTTATTCACGGCATAGTTTAGAACATAGGAAACAGAATAGTGGGTACTCTGAAATAATGAGTGGTTGTGAAGGACAGTCCTGACGGGACCTTTCAATTAGAAGGTTAGAGGAGCCTTCTTATTTCTTCGGCTAGTTTCACGAAAACTTCAATTTTGAAARATTGGTGAATTCTCGTTCACTATTGATGAAAAACCACAACTTTCATTAAAACTGGGAAAGTTTTTTAAGCCAATAAGAGTGCTTTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17815</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>262473</contig_pos>
        <strand>+</strand>
        <context>GGGAAAGTTT[C/T]TTAAGCCAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTTCACTATTGATGAAAAACCACAACTTTCATTAAAACTGGGAAAGTTT</left_flank>
        <right_flank>TTAAGCCAATAAGAGTGCTTTAACAAAATTTGGTAAAGTTGTGGAATTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTTACTCTATTTTTAAAACTTATCATAGTAAGAACGTTAGATTAATGTCATTACTATATAAGACTTTTGTGCGACCGTATTTGGAATATGGAACGGTGGTAGCCAGCCCTTCTAAAAAACTGCTCATTGACAATATATGTGTATGGTGGCATAGATTCGTTCAATTATTAGACATGGAAGTATCGATAGGCCAAGGAATAGACAAAACGCGCGAATGTAGGACAAACGAATGAACGAGTCCGACTCGAATGGATCTGAAAACTTGAAAAAAAAATTTATTCACGGCATAGTTTAGAACATAGGAAACAGAATAGTGGGTACTCTGAAATAATGAGTGGTTGTGAAGGACAGTCCTGACGGGACCTTTCAATTAGAAGGTTAGAGGAGCCTTCTTATTTCTTCGGCTAGTTTCACGAAAACTTCAATTTTGAAAAATTGGTGAATTCTCGTTCACTATTGATGAAAAACCACAACTTTCATTAAAACTGGGAAAGTTTTTTAAGCCAATAAGAGTGCTTTAACAAAATTTGGTAAAGTTGTGGAATTCCCGGAATATTTTTCACAGAAATTTTTAATTTCAAACAACACACTTTGAAAAGTGCCCCTCTATTTCTGGGACCCAATCAAAAAACCAATCGTTCTAGTTCCGGCACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGAAAGAGCCACGTGTGCAAGATACTAAACAGAAATGCTGTTTATCAAAAATTTATGAAAGACCTACTTGAAAATAATTAAAACTATTTCGATTTTGAAAA</canonical>
            <polymorphic>TAGTTACTCTATTTTTAAAACTTATCATAGTAAGAACGTTAGATTAATGTCATTACTATATAAGACTTTTGTGCGACCGTATTTGGAATATGGAACGGTGGTAGCCAGCCCTTCTAAAAAACTGCTCATTGACAATATATGTGTATGGTGGCATAGATTCGTTCAATTATTAGACATGGAAGTATCGATAGGCCAAGGAATAGACAAAACGCGCGAATGTAGGACAAACGAATGAACGAGTCCGACTCGAATGGATCTGAAAACTTGAAAAAAAAATTTATTCACGGCATAGTTTAGAACATAGGAAACAGAATAGTGGGTACTCTGAAATAATGAGTGGTTGTGAAGGACAGTCCTGACGGGACCTTTCAATTAGAAGGTTAGAGGAGCCTTCTTATTTCTTCGGCTAGTTTCACGAAAACTTCAATTTTGAAAAATTGGTGAATTCTCGTTCACTATTGATGAAAAACCACAACTTTCATTAAAACTGGGAAAGTTTYTTAAGCCAATAAGAGTGCTTTAACAAAATTTGGTAAAGTTGTGGAATTCCCGGAATATTTTTCACAGAAATTTTTAATTTCAAACAACACACTTTGAAAAGTGCCCCTCTATTTCTGGGACCCAATCAAAAAACCAATCGTTCTAGTTCCGGCACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGAAAGAGCCACGTGTGCAAGATACTAAACAGAAATGCTGTTTATCAAAAATTTATGAAAGACCTACTTGAAAATAATTAAAACTATTTCGATTTTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAACAGAATAGTGGGTACTCT</pcr_primer_p1>
		<pcr_primer_p2>GGGAATTCCACAACTTTACC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGAAACAGAATAGTGGGTACTCTGAAATAATGAGTGGTTGTGAAGGACAGTCCTGACGGGACCTTTCAATTAGAAGGTTAGAGGAGCCTTCTTATTTCTTCGGCTAGTTTCACGAAAACTTCAATTTTGAAAAATTGGTGAATTCTCGTTCACTATTGATGAAAAACCACAACTTTCATTAAAACTGGGAAAGTTTTTTAAGCCAATAAGAGTGCTTTAACAAAATTTGGTAAAGTTGTGGAATTCCC</canonical_amplicon>
		<polymorphic_amplicon>GGAAACAGAATAGTGGGTACTCTGAAATAATGAGTGGTTGTGAAGGACAGTCCTGACGGGACCTTTCAATTAGAAGGTTAGAGGAGCCTTCTTATTTCTTCGGCTAGTTTCACGAAAACTTCAATTTTGAAAAATTGGTGAATTCTCGTTCACTATTGATGAAAAACCACAACTTTCATTAAAACTGGGAAAGTTTYTTAAGCCAATAAGAGTGCTTTAACAAAATTTGGTAAAGTTGTGGAATTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17816</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>262713</contig_pos>
        <strand>+</strand>
        <context>AAATAACTTT[C/T]AGATTTTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTT</left_flank>
        <right_flank>AGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCGACTCGAATGGATCTGAAAACTTGAAAAAAAAATTTATTCACGGCATAGTTTAGAACATAGGAAACAGAATAGTGGGTACTCTGAAATAATGAGTGGTTGTGAAGGACAGTCCTGACGGGACCTTTCAATTAGAAGGTTAGAGGAGCCTTCTTATTTCTTCGGCTAGTTTCACGAAAACTTCAATTTTGAAAAATTGGTGAATTCTCGTTCACTATTGATGAAAAACCACAACTTTCATTAAAACTGGGAAAGTTTTTTAAGCCAATAAGAGTGCTTTAACAAAATTTGGTAAAGTTGTGGAATTCCCGGAATATTTTTCACAGAAATTTTTAATTTCAAACAACACACTTTGAAAAGTGCCCCTCTATTTCTGGGACCCAATCAAAAAACCAATCGTTCTAGTTCCGGCACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGAAAGAGCCACGTGTGCAAGATACTAAACAGAAATGCTGTTTATCAAAAATTTATGAAAGACCTACTTGAAAATAATTAAAACTATTTCGATTTTGAAAATCAATGAGATCATAGGCCATTGATCAGTATCCTGCTCGAAGTAGGTTCGATTGAAATAATGCATCAGAATCATATTGAATCGTAAGTTGTTGAATGAGCAACCAAAACATATATGAGCTGCCTTTTACAAATAATTACGTCTCTGATTCTCTATCATGTTCAGACAGCAGAATGTCTCTAGAGAACAACCAGTCTAGTTTATTCATAAAACAGGTTTTGAGCACATGACAAGAGTGTTCT</canonical>
            <polymorphic>TCCGACTCGAATGGATCTGAAAACTTGAAAAAAAAATTTATTCACGGCATAGTTTAGAACATAGGAAACAGAATAGTGGGTACTCTGAAATAATGAGTGGTTGTGAAGGACAGTCCTGACGGGACCTTTCAATTAGAAGGTTAGAGGAGCCTTCTTATTTCTTCGGCTAGTTTCACGAAAACTTCAATTTTGAAAAATTGGTGAATTCTCGTTCACTATTGATGAAAAACCACAACTTTCATTAAAACTGGGAAAGTTTTTTAAGCCAATAAGAGTGCTTTAACAAAATTTGGTAAAGTTGTGGAATTCCCGGAATATTTTTCACAGAAATTTTTAATTTCAAACAACACACTTTGAAAAGTGCCCCTCTATTTCTGGGACCCAATCAAAAAACCAATCGTTCTAGTTCCGGCACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTYAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGAAAGAGCCACGTGTGCAAGATACTAAACAGAAATGCTGTTTATCAAAAATTTATGAAAGACCTACTTGAAAATAATTAAAACTATTTCGATTTTGAAAATCAATGAGATCATAGGCCATTGATCAGTATCCTGCTCGAAGTAGGTTCGATTGAAATAATGCATCAGAATCATATTGAATCGTAAGTTGTTGAATGAGCAACCAAAACATATATGAGCTGCCTTTTACAAATAATTACGTCTCTGATTCTCTATCATGTTCAGACAGCAGAATGTCTCTAGAGAACAACCAGTCTAGTTTATTCATAAAACAGGTTTTGAGCACATGACAAGAGTGTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAAAATATTGTTTTCCTTGAC</pcr_primer_p1>
		<pcr_primer_p2>TCACTGGATCAATCTGAAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGA</canonical_amplicon>
		<polymorphic_amplicon>CACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTYAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17817</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>262749</contig_pos>
        <strand>+</strand>
        <context>CTGTGAAATT[A/G]TCTTGTAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATT</left_flank>
        <right_flank>TCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATTCACGGCATAGTTTAGAACATAGGAAACAGAATAGTGGGTACTCTGAAATAATGAGTGGTTGTGAAGGACAGTCCTGACGGGACCTTTCAATTAGAAGGTTAGAGGAGCCTTCTTATTTCTTCGGCTAGTTTCACGAAAACTTCAATTTTGAAAAATTGGTGAATTCTCGTTCACTATTGATGAAAAACCACAACTTTCATTAAAACTGGGAAAGTTTTTTAAGCCAATAAGAGTGCTTTAACAAAATTTGGTAAAGTTGTGGAATTCCCGGAATATTTTTCACAGAAATTTTTAATTTCAAACAACACACTTTGAAAAGTGCCCCTCTATTTCTGGGACCCAATCAAAAAACCAATCGTTCTAGTTCCGGCACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGAAAGAGCCACGTGTGCAAGATACTAAACAGAAATGCTGTTTATCAAAAATTTATGAAAGACCTACTTGAAAATAATTAAAACTATTTCGATTTTGAAAATCAATGAGATCATAGGCCATTGATCAGTATCCTGCTCGAAGTAGGTTCGATTGAAATAATGCATCAGAATCATATTGAATCGTAAGTTGTTGAATGAGCAACCAAAACATATATGAGCTGCCTTTTACAAATAATTACGTCTCTGATTCTCTATCATGTTCAGACAGCAGAATGTCTCTAGAGAACAACCAGTCTAGTTTATTCATAAAACAGGTTTTGAGCACATGACAAGAGTGTTCTAACTAGTTGATAGGGAAGCAAAATGAGTGTAAACAA</canonical>
            <polymorphic>TTTATTCACGGCATAGTTTAGAACATAGGAAACAGAATAGTGGGTACTCTGAAATAATGAGTGGTTGTGAAGGACAGTCCTGACGGGACCTTTCAATTAGAAGGTTAGAGGAGCCTTCTTATTTCTTCGGCTAGTTTCACGAAAACTTCAATTTTGAAAAATTGGTGAATTCTCGTTCACTATTGATGAAAAACCACAACTTTCATTAAAACTGGGAAAGTTTTTTAAGCCAATAAGAGTGCTTTAACAAAATTTGGTAAAGTTGTGGAATTCCCGGAATATTTTTCACAGAAATTTTTAATTTCAAACAACACACTTTGAAAAGTGCCCCTCTATTTCTGGGACCCAATCAAAAAACCAATCGTTCTAGTTCCGGCACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTRTCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGAAAGAGCCACGTGTGCAAGATACTAAACAGAAATGCTGTTTATCAAAAATTTATGAAAGACCTACTTGAAAATAATTAAAACTATTTCGATTTTGAAAATCAATGAGATCATAGGCCATTGATCAGTATCCTGCTCGAAGTAGGTTCGATTGAAATAATGCATCAGAATCATATTGAATCGTAAGTTGTTGAATGAGCAACCAAAACATATATGAGCTGCCTTTTACAAATAATTACGTCTCTGATTCTCTATCATGTTCAGACAGCAGAATGTCTCTAGAGAACAACCAGTCTAGTTTATTCATAAAACAGGTTTTGAGCACATGACAAGAGTGTTCTAACTAGTTGATAGGGAAGCAAAATGAGTGTAAACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAAAATATTGTTTTCCTTGAC</pcr_primer_p1>
		<pcr_primer_p2>TCACTGGATCAATCTGAAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGA</canonical_amplicon>
		<polymorphic_amplicon>CACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTRTCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17818</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>262775</contig_pos>
        <strand>+</strand>
        <context>ACTCTTTGAC[A/C]WATCYAGGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGAC</left_flank>
        <right_flank>AATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGAAACAGAATAGTGGGTACTCTGAAATAATGAGTGGTTGTGAAGGACAGTCCTGACGGGACCTTTCAATTAGAAGGTTAGAGGAGCCTTCTTATTTCTTCGGCTAGTTTCACGAAAACTTCAATTTTGAAAAATTGGTGAATTCTCGTTCACTATTGATGAAAAACCACAACTTTCATTAAAACTGGGAAAGTTTTTTAAGCCAATAAGAGTGCTTTAACAAAATTTGGTAAAGTTGTGGAATTCCCGGAATATTTTTCACAGAAATTTTTAATTTCAAACAACACACTTTGAAAAGTGCCCCTCTATTTCTGGGACCCAATCAAAAAACCAATCGTTCTAGTTCCGGCACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGAAAGAGCCACGTGTGCAAGATACTAAACAGAAATGCTGTTTATCAAAAATTTATGAAAGACCTACTTGAAAATAATTAAAACTATTTCGATTTTGAAAATCAATGAGATCATAGGCCATTGATCAGTATCCTGCTCGAAGTAGGTTCGATTGAAATAATGCATCAGAATCATATTGAATCGTAAGTTGTTGAATGAGCAACCAAAACATATATGAGCTGCCTTTTACAAATAATTACGTCTCTGATTCTCTATCATGTTCAGACAGCAGAATGTCTCTAGAGAACAACCAGTCTAGTTTATTCATAAAACAGGTTTTGAGCACATGACAAGAGTGTTCTAACTAGTTGATAGGGAAGCAAAATGAGTGTAAACAAATATACAATAGCAATTAATTAGTTAG</canonical>
            <polymorphic>AGGAAACAGAATAGTGGGTACTCTGAAATAATGAGTGGTTGTGAAGGACAGTCCTGACGGGACCTTTCAATTAGAAGGTTAGAGGAGCCTTCTTATTTCTTCGGCTAGTTTCACGAAAACTTCAATTTTGAAAAATTGGTGAATTCTCGTTCACTATTGATGAAAAACCACAACTTTCATTAAAACTGGGAAAGTTTTTTAAGCCAATAAGAGTGCTTTAACAAAATTTGGTAAAGTTGTGGAATTCCCGGAATATTTTTCACAGAAATTTTTAATTTCAAACAACACACTTTGAAAAGTGCCCCTCTATTTCTGGGACCCAATCAAAAAACCAATCGTTCTAGTTCCGGCACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACMAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGAAAGAGCCACGTGTGCAAGATACTAAACAGAAATGCTGTTTATCAAAAATTTATGAAAGACCTACTTGAAAATAATTAAAACTATTTCGATTTTGAAAATCAATGAGATCATAGGCCATTGATCAGTATCCTGCTCGAAGTAGGTTCGATTGAAATAATGCATCAGAATCATATTGAATCGTAAGTTGTTGAATGAGCAACCAAAACATATATGAGCTGCCTTTTACAAATAATTACGTCTCTGATTCTCTATCATGTTCAGACAGCAGAATGTCTCTAGAGAACAACCAGTCTAGTTTATTCATAAAACAGGTTTTGAGCACATGACAAGAGTGTTCTAACTAGTTGATAGGGAAGCAAAATGAGTGTAAACAAATATACAATAGCAATTAATTAGTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAAAATATTGTTTTCCTTGAC</pcr_primer_p1>
		<pcr_primer_p2>TCACTGGATCAATCTGAAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGA</canonical_amplicon>
		<polymorphic_amplicon>CACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACMAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17819</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>262776</contig_pos>
        <strand>+</strand>
        <context>CTCTTTGACM[A/T]ATCYAGGCAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACC</left_flank>
        <right_flank>ATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAACAGAATAGTGGGTACTCTGAAATAATGAGTGGTTGTGAAGGACAGTCCTGACGGGACCTTTCAATTAGAAGGTTAGAGGAGCCTTCTTATTTCTTCGGCTAGTTTCACGAAAACTTCAATTTTGAAAAATTGGTGAATTCTCGTTCACTATTGATGAAAAACCACAACTTTCATTAAAACTGGGAAAGTTTTTTAAGCCAATAAGAGTGCTTTAACAAAATTTGGTAAAGTTGTGGAATTCCCGGAATATTTTTCACAGAAATTTTTAATTTCAAACAACACACTTTGAAAAGTGCCCCTCTATTTCTGGGACCCAATCAAAAAACCAATCGTTCTAGTTCCGGCACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGAAAGAGCCACGTGTGCAAGATACTAAACAGAAATGCTGTTTATCAAAAATTTATGAAAGACCTACTTGAAAATAATTAAAACTATTTCGATTTTGAAAATCAATGAGATCATAGGCCATTGATCAGTATCCTGCTCGAAGTAGGTTCGATTGAAATAATGCATCAGAATCATATTGAATCGTAAGTTGTTGAATGAGCAACCAAAACATATATGAGCTGCCTTTTACAAATAATTACGTCTCTGATTCTCTATCATGTTCAGACAGCAGAATGTCTCTAGAGAACAACCAGTCTAGTTTATTCATAAAACAGGTTTTGAGCACATGACAAGAGTGTTCTAACTAGTTGATAGGGAAGCAAAATGAGTGTAAACAAATATACAATAGCAATTAATTAGTTAGC</canonical>
            <polymorphic>GGAAACAGAATAGTGGGTACTCTGAAATAATGAGTGGTTGTGAAGGACAGTCCTGACGGGACCTTTCAATTAGAAGGTTAGAGGAGCCTTCTTATTTCTTCGGCTAGTTTCACGAAAACTTCAATTTTGAAAAATTGGTGAATTCTCGTTCACTATTGATGAAAAACCACAACTTTCATTAAAACTGGGAAAGTTTTTTAAGCCAATAAGAGTGCTTTAACAAAATTTGGTAAAGTTGTGGAATTCCCGGAATATTTTTCACAGAAATTTTTAATTTCAAACAACACACTTTGAAAAGTGCCCCTCTATTTCTGGGACCCAATCAAAAAACCAATCGTTCTAGTTCCGGCACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCWATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGAAAGAGCCACGTGTGCAAGATACTAAACAGAAATGCTGTTTATCAAAAATTTATGAAAGACCTACTTGAAAATAATTAAAACTATTTCGATTTTGAAAATCAATGAGATCATAGGCCATTGATCAGTATCCTGCTCGAAGTAGGTTCGATTGAAATAATGCATCAGAATCATATTGAATCGTAAGTTGTTGAATGAGCAACCAAAACATATATGAGCTGCCTTTTACAAATAATTACGTCTCTGATTCTCTATCATGTTCAGACAGCAGAATGTCTCTAGAGAACAACCAGTCTAGTTTATTCATAAAACAGGTTTTGAGCACATGACAAGAGTGTTCTAACTAGTTGATAGGGAAGCAAAATGAGTGTAAACAAATATACAATAGCAATTAATTAGTTAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAAAATATTGTTTTCCTTGAC</pcr_primer_p1>
		<pcr_primer_p2>TCACTGGATCAATCTGAAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGA</canonical_amplicon>
		<polymorphic_amplicon>CACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCWATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17820</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>262788</contig_pos>
        <strand>+</strand>
        <context>TCYAGGCACA[A/C]TCTGCGACGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACA</left_flank>
        <right_flank>TCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGGTACTCTGAAATAATGAGTGGTTGTGAAGGACAGTCCTGACGGGACCTTTCAATTAGAAGGTTAGAGGAGCCTTCTTATTTCTTCGGCTAGTTTCACGAAAACTTCAATTTTGAAAAATTGGTGAATTCTCGTTCACTATTGATGAAAAACCACAACTTTCATTAAAACTGGGAAAGTTTTTTAAGCCAATAAGAGTGCTTTAACAAAATTTGGTAAAGTTGTGGAATTCCCGGAATATTTTTCACAGAAATTTTTAATTTCAAACAACACACTTTGAAAAGTGCCCCTCTATTTCTGGGACCCAATCAAAAAACCAATCGTTCTAGTTCCGGCACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGAAAGAGCCACGTGTGCAAGATACTAAACAGAAATGCTGTTTATCAAAAATTTATGAAAGACCTACTTGAAAATAATTAAAACTATTTCGATTTTGAAAATCAATGAGATCATAGGCCATTGATCAGTATCCTGCTCGAAGTAGGTTCGATTGAAATAATGCATCAGAATCATATTGAATCGTAAGTTGTTGAATGAGCAACCAAAACATATATGAGCTGCCTTTTACAAATAATTACGTCTCTGATTCTCTATCATGTTCAGACAGCAGAATGTCTCTAGAGAACAACCAGTCTAGTTTATTCATAAAACAGGTTTTGAGCACATGACAAGAGTGTTCTAACTAGTTGATAGGGAAGCAAAATGAGTGTAAACAAATATACAATAGCAATTAATTAGTTAGCTCCTGCTTTTCG</canonical>
            <polymorphic>GTGGGTACTCTGAAATAATGAGTGGTTGTGAAGGACAGTCCTGACGGGACCTTTCAATTAGAAGGTTAGAGGAGCCTTCTTATTTCTTCGGCTAGTTTCACGAAAACTTCAATTTTGAAAAATTGGTGAATTCTCGTTCACTATTGATGAAAAACCACAACTTTCATTAAAACTGGGAAAGTTTTTTAAGCCAATAAGAGTGCTTTAACAAAATTTGGTAAAGTTGTGGAATTCCCGGAATATTTTTCACAGAAATTTTTAATTTCAAACAACACACTTTGAAAAGTGCCCCTCTATTTCTGGGACCCAATCAAAAAACCAATCGTTCTAGTTCCGGCACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAMTCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGAAAGAGCCACGTGTGCAAGATACTAAACAGAAATGCTGTTTATCAAAAATTTATGAAAGACCTACTTGAAAATAATTAAAACTATTTCGATTTTGAAAATCAATGAGATCATAGGCCATTGATCAGTATCCTGCTCGAAGTAGGTTCGATTGAAATAATGCATCAGAATCATATTGAATCGTAAGTTGTTGAATGAGCAACCAAAACATATATGAGCTGCCTTTTACAAATAATTACGTCTCTGATTCTCTATCATGTTCAGACAGCAGAATGTCTCTAGAGAACAACCAGTCTAGTTTATTCATAAAACAGGTTTTGAGCACATGACAAGAGTGTTCTAACTAGTTGATAGGGAAGCAAAATGAGTGTAAACAAATATACAATAGCAATTAATTAGTTAGCTCCTGCTTTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAAAATATTGTTTTCCTTGAC</pcr_primer_p1>
		<pcr_primer_p2>TCACTGGATCAATCTGAAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGA</canonical_amplicon>
		<polymorphic_amplicon>CACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAMTCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17821</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>268782</contig_pos>
        <strand>+</strand>
        <context>AAACAATATC[C/T]AGGGCTCCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATTCTAACTTACTGCACTTACGATCACAATAACTCCATAAACAATATC</left_flank>
        <right_flank>AGGGCTCCAGCAAAAACGTTTACATTTAAATTCGGGTTCGGAGGTTTGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAATTTTGACCATTAGGGGACAGACCATGTCAAGGATTCGGTTGAGGGCGAGAACAAGACATGTTAGGCATGCACTGCACCAACAACCAAGACCAATGGCTCCAGATATGTAGATGATGTTTGGATAGTCACAATAAGAGGCTCCTTGCATCAAAAGGAATCCAGTGACGAGAGAGTTGATAGCTAGAAAAAAGGCAATCATAGATTTTTAGATCATTACTTTTAAAGGACCCTTGAATTAGAGGGGACCCTTCTGTTTCTACGGAGAGAAGGAGTCCTTCCAATACAGGTTTTACGCTGTACTTTTGTATCTCAAACTCACTTATTGCACCTATATCAAATAGTCCAAGAAAAAACATGATTTTGAAACATGCCAGCCTTGATTGCCGGTGAAAAACCACCACAGTTGGAGCATACAGAAACTGAACTTTTTTATTTTTATTTGTATTAATTCTAACTTACTGCACTTACGATCACAATAACTCCATAAACAATATCTAGGGCTCCAGCAAAAACGTTTACATTTAAATTCGGGTTCGGAGGTTTGTAAGAGCTGCAATTGTAACCAGGAATTGATTCTGCATCTCCATAGTATAAAAATCGGTTCATTCCTTTCTTTCCTGAAAAAAATGTAATGAGATTAATTTTGAATCAAGGTGATGATATTGAAAAAAAGAAAGGGAGAATGAAATTTTTTGAACCTGGAAAAAAAGGAGGAGCTGTGGCCGAATATAAAGAAAAAGTAGGCGTGCGAATTGGCAATGAACGAAAAATTGGTAGTCATTGATGAAGAGAAGGATTATAGTGAGCTAAACGGTTTTGCGTTCTGCTTAGCCCTCGGATAATCTAACGAGCCCAAAACTACTGTTTATCACGGAATCGGTGCTCAACTTTTCAAAAAATCAAAAGCTTGGGCATTCGAGAAAACAAGATAAATATTAGCCAGACCTTGTTCATCCTAATCGTTTTGATATTTTCTTGGAAAATCCCCCTTTCTAG</canonical>
            <polymorphic>TAAATTTTGACCATTAGGGGACAGACCATGTCAAGGATTCGGTTGAGGGCGAGAACAAGACATGTTAGGCATGCACTGCACCAACAACCAAGACCAATGGCTCCAGATATGTAGATGATGTTTGGATAGTCACAATAAGAGGCTCCTTGCATCAAAAGGAATCCAGTGACGAGAGAGTTGATAGCTAGAAAAAAGGCAATCATAGATTTTTAGATCATTACTTTTAAAGGACCCTTGAATTAGAGGGGACCCTTCTGTTTCTACGGAGAGAAGGAGTCCTTCCAATACAGGTTTTACGCTGTACTTTTGTATCTCAAACTCACTTATTGCACCTATATCAAATAGTCCAAGAAAAAACATGATTTTGAAACATGCCAGCCTTGATTGCCGGTGAAAAACCACCACAGTTGGAGCATACAGAAACTGAACTTTTTTATTTTTATTTGTATTAATTCTAACTTACTGCACTTACGATCACAATAACTCCATAAACAATATCYAGGGCTCCAGCAAAAACGTTTACATTTAAATTCGGGTTCGGAGGTTTGTAAGAGCTGCAATTGTAACCAGGAATTGATTCTGCATCTCCATAGTATAAAAATCGGTTCATTCCTTTCTTTCCTGAAAAAAATGTAATGAGATTAATTTTGAATCAAGGTGATGATATTGAAAAAAAGAAAGGGAGAATGAAATTTTTTGAACCTGGAAAAAAAGGAGGAGCTGTGGCCGAATATAAAGAAAAAGTAGGCGTGCGAATTGGCAATGAACGAAAAATTGGTAGTCATTGATGAAGAGAAGGATTATAGTGAGCTAAACGGTTTTGCGTTCTGCTTAGCCCTCGGATAATCTAACGAGCCCAAAACTACTGTTTATCACGGAATCGGTGCTCAACTTTTCAAAAAATCAAAAGCTTGGGCATTCGAGAAAACAAGATAAATATTAGCCAGACCTTGTTCATCCTAATCGTTTTGATATTTTCTTGGAAAATCCCCCTTTCTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>498 314 185 3</canonical_bands>
                <polymorphic_bands>812 185 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGCATACAGAAACTGAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>ACCTTGATTCAAAATTAATCTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAGCATACAGAAACTGAACTTTTTTATTTTTATTTGTATTAATTCTAACTTACTGCACTTACGATCACAATAACTCCATAAACAATATCTAGGGCTCCAGCAAAAACGTTTACATTTAAATTCGGGTTCGGAGGTTTGTAAGAGCTGCAATTGTAACCAGGAATTGATTCTGCATCTCCATAGTATAAAAATCGGTTCATTCCTTTCTTTCCTGAAAAAAATGTAATGAGATTAATTTTGAATCAAGGT</canonical_amplicon>
		<polymorphic_amplicon>GAGCATACAGAAACTGAACTTTTTTATTTTTATTTGTATTAATTCTAACTTACTGCACTTACGATCACAATAACTCCATAAACAATATCYAGGGCTCCAGCAAAAACGTTTACATTTAAATTCGGGTTCGGAGGTTTGTAAGAGCTGCAATTGTAACCAGGAATTGATTCTGCATCTCCATAGTATAAAAATCGGTTCATTCCTTTCTTTCCTGAAAAAAATGTAATGAGATTAATTTTGAATCAAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17822</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>268745</contig_pos>
        <strand>+</strand>
        <context>TYCTAACTTA[C/T]TGCACTTACG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCATACAGAAACTGAACTTTTTTATTTTTATTTGTATTAATTCTAACTTA</left_flank>
        <right_flank>TGCACTTACGATCACAATAACTCCATAAACAATATCTAGGGCTCCAGCAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCATCAGAACTGCACATGTTCGATAGCCACGGAAGTAAATTTTGACCATTAGGGGACAGACCATGTCAAGGATTCGGTTGAGGGCGAGAACAAGACATGTTAGGCATGCACTGCACCAACAACCAAGACCAATGGCTCCAGATATGTAGATGATGTTTGGATAGTCACAATAAGAGGCTCCTTGCATCAAAAGGAATCCAGTGACGAGAGAGTTGATAGCTAGAAAAAAGGCAATCATAGATTTTTAGATCATTACTTTTAAAGGACCCTTGAATTAGAGGGGACCCTTCTGTTTCTACGGAGAGAAGGAGTCCTTCCAATACAGGTTTTACGCTGTACTTTTGTATCTCAAACTCACTTATTGCACCTATATCAAATAGTCCAAGAAAAAACATGATTTTGAAACATGCCAGCCTTGATTGCCGGTGAAAAACCACCACAGTTGGAGCATACAGAAACTGAACTTTTTTATTTTTATTTGTATTAATTCTAACTTACTGCACTTACGATCACAATAACTCCATAAACAATATCTAGGGCTCCAGCAAAAACGTTTACATTTAAATTCGGGTTCGGAGGTTTGTAAGAGCTGCAATTGTAACCAGGAATTGATTCTGCATCTCCATAGTATAAAAATCGGTTCATTCCTTTCTTTCCTGAAAAAAATGTAATGAGATTAATTTTGAATCAAGGTGATGATATTGAAAAAAAGAAAGGGAGAATGAAATTTTTTGAACCTGGAAAAAAAGGAGGAGCTGTGGCCGAATATAAAGAAAAAGTAGGCGTGCGAATTGGCAATGAACGAAAAATTGGTAGTCATTGATGAAGAGAAGGATTATAGTGAGCTAAACGGTTTTGCGTTCTGCTTAGCCCTCGGATAATCTAACGAGCCCAAAACTACTGTTTATCACGGAATCGGTGCTCAACTTTTCAAAAAATCAAAAGCTTGGGCATTCGAGAAAACAAGATAAATATTAGCCAGACCTTGTTCATCCTAA</canonical>
            <polymorphic>AGCCATCAGAACTGCACATGTTCGATAGCCACGGAAGTAAATTTTGACCATTAGGGGACAGACCATGTCAAGGATTCGGTTGAGGGCGAGAACAAGACATGTTAGGCATGCACTGCACCAACAACCAAGACCAATGGCTCCAGATATGTAGATGATGTTTGGATAGTCACAATAAGAGGCTCCTTGCATCAAAAGGAATCCAGTGACGAGAGAGTTGATAGCTAGAAAAAAGGCAATCATAGATTTTTAGATCATTACTTTTAAAGGACCCTTGAATTAGAGGGGACCCTTCTGTTTCTACGGAGAGAAGGAGTCCTTCCAATACAGGTTTTACGCTGTACTTTTGTATCTCAAACTCACTTATTGCACCTATATCAAATAGTCCAAGAAAAAACATGATTTTGAAACATGCCAGCCTTGATTGCCGGTGAAAAACCACCACAGTTGGAGCATACAGAAACTGAACTTTTTTATTTTTATTTGTATTAATTCTAACTTAYTGCACTTACGATCACAATAACTCCATAAACAATATCTAGGGCTCCAGCAAAAACGTTTACATTTAAATTCGGGTTCGGAGGTTTGTAAGAGCTGCAATTGTAACCAGGAATTGATTCTGCATCTCCATAGTATAAAAATCGGTTCATTCCTTTCTTTCCTGAAAAAAATGTAATGAGATTAATTTTGAATCAAGGTGATGATATTGAAAAAAAGAAAGGGAGAATGAAATTTTTTGAACCTGGAAAAAAAGGAGGAGCTGTGGCCGAATATAAAGAAAAAGTAGGCGTGCGAATTGGCAATGAACGAAAAATTGGTAGTCATTGATGAAGAGAAGGATTATAGTGAGCTAAACGGTTTTGCGTTCTGCTTAGCCCTCGGATAATCTAACGAGCCCAAAACTACTGTTTATCACGGAATCGGTGCTCAACTTTTCAAAAAATCAAAAGCTTGGGCATTCGAGAAAACAAGATAAATATTAGCCAGACCTTGTTCATCCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCATACAGAAACTGAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>ACCTTGATTCAAAATTAATCTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAGCATACAGAAACTGAACTTTTTTATTTTTATTTGTATTAATTCTAACTTACTGCACTTACGATCACAATAACTCCATAAACAATATCTAGGGCTCCAGCAAAAACGTTTACATTTAAATTCGGGTTCGGAGGTTTGTAAGAGCTGCAATTGTAACCAGGAATTGATTCTGCATCTCCATAGTATAAAAATCGGTTCATTCCTTTCTTTCCTGAAAAAAATGTAATGAGATTAATTTTGAATCAAGGT</canonical_amplicon>
		<polymorphic_amplicon>GAGCATACAGAAACTGAACTTTTTTATTTTTATTTGTATTAATTCTAACTTAYTGCACTTACGATCACAATAACTCCATAAACAATATCTAGGGCTCCAGCAAAAACGTTTACATTTAAATTCGGGTTCGGAGGTTTGTAAGAGCTGCAATTGTAACCAGGAATTGATTCTGCATCTCCATAGTATAAAAATCGGTTCATTCCTTTCTTTCCTGAAAAAAATGTAATGAGATTAATTTTGAATCAAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17823</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>268736</contig_pos>
        <strand>+</strand>
        <context>TTGTATTAAT[C/T]CTAACTTAYT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAGTTGGAGCATACAGAAACTGAACTTTTTTATTTTTATTTGTATTAAT</left_flank>
        <right_flank>CTAACTTACTGCACTTACGATCACAATAACTCCATAAACAATATCTAGGG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAATTGGAGCCATCAGAACTGCACATGTTCGATAGCCACGGAAGTAAATTTTGACCATTAGGGGACAGACCATGTCAAGGATTCGGTTGAGGGCGAGAACAAGACATGTTAGGCATGCACTGCACCAACAACCAAGACCAATGGCTCCAGATATGTAGATGATGTTTGGATAGTCACAATAAGAGGCTCCTTGCATCAAAAGGAATCCAGTGACGAGAGAGTTGATAGCTAGAAAAAAGGCAATCATAGATTTTTAGATCATTACTTTTAAAGGACCCTTGAATTAGAGGGGACCCTTCTGTTTCTACGGAGAGAAGGAGTCCTTCCAATACAGGTTTTACGCTGTACTTTTGTATCTCAAACTCACTTATTGCACCTATATCAAATAGTCCAAGAAAAAACATGATTTTGAAACATGCCAGCCTTGATTGCCGGTGAAAAACCACCACAGTTGGAGCATACAGAAACTGAACTTTTTTATTTTTATTTGTATTAATTCTAACTTACTGCACTTACGATCACAATAACTCCATAAACAATATCTAGGGCTCCAGCAAAAACGTTTACATTTAAATTCGGGTTCGGAGGTTTGTAAGAGCTGCAATTGTAACCAGGAATTGATTCTGCATCTCCATAGTATAAAAATCGGTTCATTCCTTTCTTTCCTGAAAAAAATGTAATGAGATTAATTTTGAATCAAGGTGATGATATTGAAAAAAAGAAAGGGAGAATGAAATTTTTTGAACCTGGAAAAAAAGGAGGAGCTGTGGCCGAATATAAAGAAAAAGTAGGCGTGCGAATTGGCAATGAACGAAAAATTGGTAGTCATTGATGAAGAGAAGGATTATAGTGAGCTAAACGGTTTTGCGTTCTGCTTAGCCCTCGGATAATCTAACGAGCCCAAAACTACTGTTTATCACGGAATCGGTGCTCAACTTTTCAAAAAATCAAAAGCTTGGGCATTCGAGAAAACAAGATAAATATTAGCCAGACCTTGT</canonical>
            <polymorphic>GAGAATTGGAGCCATCAGAACTGCACATGTTCGATAGCCACGGAAGTAAATTTTGACCATTAGGGGACAGACCATGTCAAGGATTCGGTTGAGGGCGAGAACAAGACATGTTAGGCATGCACTGCACCAACAACCAAGACCAATGGCTCCAGATATGTAGATGATGTTTGGATAGTCACAATAAGAGGCTCCTTGCATCAAAAGGAATCCAGTGACGAGAGAGTTGATAGCTAGAAAAAAGGCAATCATAGATTTTTAGATCATTACTTTTAAAGGACCCTTGAATTAGAGGGGACCCTTCTGTTTCTACGGAGAGAAGGAGTCCTTCCAATACAGGTTTTACGCTGTACTTTTGTATCTCAAACTCACTTATTGCACCTATATCAAATAGTCCAAGAAAAAACATGATTTTGAAACATGCCAGCCTTGATTGCCGGTGAAAAACCACCACAGTTGGAGCATACAGAAACTGAACTTTTTTATTTTTATTTGTATTAATYCTAACTTACTGCACTTACGATCACAATAACTCCATAAACAATATCTAGGGCTCCAGCAAAAACGTTTACATTTAAATTCGGGTTCGGAGGTTTGTAAGAGCTGCAATTGTAACCAGGAATTGATTCTGCATCTCCATAGTATAAAAATCGGTTCATTCCTTTCTTTCCTGAAAAAAATGTAATGAGATTAATTTTGAATCAAGGTGATGATATTGAAAAAAAGAAAGGGAGAATGAAATTTTTTGAACCTGGAAAAAAAGGAGGAGCTGTGGCCGAATATAAAGAAAAAGTAGGCGTGCGAATTGGCAATGAACGAAAAATTGGTAGTCATTGATGAAGAGAAGGATTATAGTGAGCTAAACGGTTTTGCGTTCTGCTTAGCCCTCGGATAATCTAACGAGCCCAAAACTACTGTTTATCACGGAATCGGTGCTCAACTTTTCAAAAAATCAAAAGCTTGGGCATTCGAGAAAACAAGATAAATATTAGCCAGACCTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>235 213 182 78 72 64 47 45 30 18 13 3</canonical_bands>
                <polymorphic_bands>291 235 182 72 64 47 45 30 18 13 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTCACTTATTGCACCTATATCA</pcr_primer_p1>
		<pcr_primer_p2>TTACAATTGCAGCTCTTACAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACTCACTTATTGCACCTATATCAAATAGTCCAAGAAAAAACATGATTTTGAAACATGCCAGCCTTGATTGCCGGTGAAAAACCACCACAGTTGGAGCATACAGAAACTGAACTTTTTTATTTTTATTTGTATTAATTCTAACTTACTGCACTTACGATCACAATAACTCCATAAACAATATCTAGGGCTCCAGCAAAAACGTTTACATTTAAATTCGGGTTCGGAGGTTTGTAAGAGCTGCAATTGTAA</canonical_amplicon>
		<polymorphic_amplicon>AACTCACTTATTGCACCTATATCAAATAGTCCAAGAAAAAACATGATTTTGAAACATGCCAGCCTTGATTGCCGGTGAAAAACCACCACAGTTGGAGCATACAGAAACTGAACTTTTTTATTTTTATTTGTATTAATYCTAACTTACTGCACTTACGATCACAATAACTCCATAAACAATATCTAGGGCTCCAGCAAAAACGTTTACATTTAAATTCGGGTTCGGAGGTTTGTAAGAGCTGCAATTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17824</snp_id>
        <super_contig>c010500932.Contig1</super_contig>
        <contig_pos>32902</contig_pos>
        <strand>+</strand>
        <context>CAGATAGTTM[A/C]AACGGAGAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAGTACGGACAGAGAAATAGTACGGAAAGGAGAAGACACGCAGATAGTTA</left_flank>
        <right_flank>AACGGAGAACAGAACAGTAATGGGGGTTGGGTGGGGGTGTGAGAGCGCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTCCAGAATTAAAAAAAAAGCAGGAAACATCGAAATTCGAAAGTATTTCAATTCTGAAAATTTTCGAGCTATTTATTGGTAAAAATGCAAATTCCGCATTTTTCAAGATTCCTGAACATGGAATCCGGCATGGTCAAAAATTTGGAATTTCAGTCAGAAAGAATGGTTGAAAATCACAAATTCCGAATTTTAGGCTCAAAATCAATTGATAAGTTTGTAACATTTTTCAGGCAAAAATCGGAAAAATCAAGATACTCTTTTTAATAAAAAATCGCAAAATTAAACTGTCCAGCCAGAAAAACCCGGGTAAAGTAGTTTCATAATGTTAGCGGAAAAGCGGGTCGCGGTGTGGAACAGATGATGATGATACGGAGAAAAAGAGAGAGAAAAAGAAGAATAAGAAGAGCCATCCCTCCGTTGCCTCTCCCTCTATTGTGGCCAAACAGACAGTACGGACAGAGAAATAGTACGGAAAGGAGAAGACACGCAGATAGTTAAAACGGAGAACAGAACAGTAATGGGGGTTGGGTGGGGGTGTGAGAGCGCTTGTTGGCGGACAGACGGGGGACAGTAGTACACCCGATGCGGGAGAGAGGGGGTGTCTTATGTCCGTATGGTATATACGGACTGAAGGGGTAACAGATGAAGGCTCCTGTTGATTTATAGACACTGTCCCGTCCGTCTTTTCTGTCGGAAACCTGCTTCGAAAATATAGGTTCCTCCACTAAAGACGCCGACACCGTTGAATCAGAAATTTGCAAAGCCACGTCATCCAAAACATCTGGGTCTATATTTTTTTCTTTTGAGTTACAAACTTGTGCATGATCTCAAAATGTGTGAATTCTAGCTTAGGCTCCAATTTAAAAGAACTTTGAATTACAAACTTTTGTGAATAATCTCAAAACGCACGATTTCTAAAATGTACGAAAATGAAAAGAAGGGCGGAACGAATGGGATAATGAAGGACAACAGATTTCAAGGTTCCAAGTAATTAGAGA</canonical>
            <polymorphic>TTGTCCAGAATTAAAAAAAAAGCAGGAAACATCGAAATTCGAAAGTATTTCAATTCTGAAAATTTTCGAGCTATTTATTGGTAAAAATGCAAATTCCGCATTTTTCAAGATTCCTGAACATGGAATCCGGCATGGTCAAAAATTTGGAATTTCAGTCAGAAAGAATGGTTGAAAATCACAAATTCCGAATTTTAGGCTCAAAATCAATTGATAAGTTTGTAACATTTTTCAGGCAAAAATCGGAAAAATCAAGATACTCTTTTTAATAAAAAATCGCAAAATTAAACTGTCCAGCCAGAAAAACCCGGGTAAAGTAGTTTCATAATGTTAGCGGAAAAGCGGGTCGCGGTGTGGAACAGATGATGATGATACGGAGAAAAAGAGAGAGAAAAAGAAGAATAAGAAGAGCCATCCCTCCGTTGCCTCTCCCTCTATTGTGGCCAAACAGACAGTACGGACAGAGAAATAGTACGGAAAGGAGAAGACACGCAGATAGTTAMAACGGAGAACAGAACAGTAATGGGGGTTGGGTGGGGGTGTGAGAGCGCTTGTTGGCGGACAGACGGGGGACAGTAGTACACCCGATGCGGGAGAGAGGGGGTGTCTTATGTCCGTATGGTATATACGGACTGAAGGGGTAACAGATGAAGGCTCCTGTTGATTTATAGACACTGTCCCGTCCGTCTTTTCTGTCGGAAACCTGCTTCGAAAATATAGGTTCCTCCACTAAAGACGCCGACACCGTTGAATCAGAAATTTGCAAAGCCACGTCATCCAAAACATCTGGGTCTATATTTTTTTCTTTTGAGTTACAAACTTGTGCATGATCTCAAAATGTGTGAATTCTAGCTTAGGCTCCAATTTAAAAGAACTTTGAATTACAAACTTTTGTGAATAATCTCAAAACGCACGATTTCTAAAATGTACGAAAATGAAAAGAAGGGCGGAACGAATGGGATAATGAAGGACAACAGATTTCAAGGTTCCAAGTAATTAGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>366 252 215 137 19 11</canonical_bands>
                <polymorphic_bands>581 252 137 19 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGACAGTACGGACAGAGAAATA</pcr_primer_p1>
		<pcr_primer_p2>GACGGGACAGTGTCTATAAATC</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>CAGACAGTACGGACAGAGAAATAGTACGGAAAGGAGAAGACACGCAGATAGTTAAAACGGAGAACAGAACAGTAATGGGGGTTGGGTGGGGGTGTGAGAGCGCTTGTTGGCGGACAGACGGGGGACAGTAGTACACCCGATGCGGGAGAGAGGGGGTGTCTTATGTCCGTATGGTATATACGGACTGAAGGGGTAACAGATGAAGGCTCCTGTTGATTTATAGACACTGTCCCGTC</canonical_amplicon>
		<polymorphic_amplicon>CAGACAGTACGGACAGAGAAATAGTACGGAAAGGAGAAGACACGCAGATAGTTAMAACGGAGAACAGAACAGTAATGGGGGTTGGGTGGGGGTGTGAGAGCGCTTGTTGGCGGACAGACGGGGGACAGTAGTACACCCGATGCGGGAGAGAGGGGGTGTCTTATGTCCGTATGGTATATACGGACTGAAGGGGTAACAGATGAAGGCTCCTGTTGATTTATAGACACTGTCCCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17825</snp_id>
        <super_contig>c010500932.Contig1</super_contig>
        <contig_pos>32901</contig_pos>
        <strand>+</strand>
        <context>GCAGATAGTT[A/C]MAACGGAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACAGTACGGACAGAGAAATAGTACGGAAAGGAGAAGACACGCAGATAGTT</left_flank>
        <right_flank>AAACGGAGAACAGAACAGTAATGGGGGTTGGGTGGGGGTGTGAGAGCGCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGTCCAGAATTAAAAAAAAAGCAGGAAACATCGAAATTCGAAAGTATTTCAATTCTGAAAATTTTCGAGCTATTTATTGGTAAAAATGCAAATTCCGCATTTTTCAAGATTCCTGAACATGGAATCCGGCATGGTCAAAAATTTGGAATTTCAGTCAGAAAGAATGGTTGAAAATCACAAATTCCGAATTTTAGGCTCAAAATCAATTGATAAGTTTGTAACATTTTTCAGGCAAAAATCGGAAAAATCAAGATACTCTTTTTAATAAAAAATCGCAAAATTAAACTGTCCAGCCAGAAAAACCCGGGTAAAGTAGTTTCATAATGTTAGCGGAAAAGCGGGTCGCGGTGTGGAACAGATGATGATGATACGGAGAAAAAGAGAGAGAAAAAGAAGAATAAGAAGAGCCATCCCTCCGTTGCCTCTCCCTCTATTGTGGCCAAACAGACAGTACGGACAGAGAAATAGTACGGAAAGGAGAAGACACGCAGATAGTTAAAACGGAGAACAGAACAGTAATGGGGGTTGGGTGGGGGTGTGAGAGCGCTTGTTGGCGGACAGACGGGGGACAGTAGTACACCCGATGCGGGAGAGAGGGGGTGTCTTATGTCCGTATGGTATATACGGACTGAAGGGGTAACAGATGAAGGCTCCTGTTGATTTATAGACACTGTCCCGTCCGTCTTTTCTGTCGGAAACCTGCTTCGAAAATATAGGTTCCTCCACTAAAGACGCCGACACCGTTGAATCAGAAATTTGCAAAGCCACGTCATCCAAAACATCTGGGTCTATATTTTTTTCTTTTGAGTTACAAACTTGTGCATGATCTCAAAATGTGTGAATTCTAGCTTAGGCTCCAATTTAAAAGAACTTTGAATTACAAACTTTTGTGAATAATCTCAAAACGCACGATTTCTAAAATGTACGAAAATGAAAAGAAGGGCGGAACGAATGGGATAATGAAGGACAACAGATTTCAAGGTTCCAAGTAATTAGAG</canonical>
            <polymorphic>TTTGTCCAGAATTAAAAAAAAAGCAGGAAACATCGAAATTCGAAAGTATTTCAATTCTGAAAATTTTCGAGCTATTTATTGGTAAAAATGCAAATTCCGCATTTTTCAAGATTCCTGAACATGGAATCCGGCATGGTCAAAAATTTGGAATTTCAGTCAGAAAGAATGGTTGAAAATCACAAATTCCGAATTTTAGGCTCAAAATCAATTGATAAGTTTGTAACATTTTTCAGGCAAAAATCGGAAAAATCAAGATACTCTTTTTAATAAAAAATCGCAAAATTAAACTGTCCAGCCAGAAAAACCCGGGTAAAGTAGTTTCATAATGTTAGCGGAAAAGCGGGTCGCGGTGTGGAACAGATGATGATGATACGGAGAAAAAGAGAGAGAAAAAGAAGAATAAGAAGAGCCATCCCTCCGTTGCCTCTCCCTCTATTGTGGCCAAACAGACAGTACGGACAGAGAAATAGTACGGAAAGGAGAAGACACGCAGATAGTTMAAACGGAGAACAGAACAGTAATGGGGGTTGGGTGGGGGTGTGAGAGCGCTTGTTGGCGGACAGACGGGGGACAGTAGTACACCCGATGCGGGAGAGAGGGGGTGTCTTATGTCCGTATGGTATATACGGACTGAAGGGGTAACAGATGAAGGCTCCTGTTGATTTATAGACACTGTCCCGTCCGTCTTTTCTGTCGGAAACCTGCTTCGAAAATATAGGTTCCTCCACTAAAGACGCCGACACCGTTGAATCAGAAATTTGCAAAGCCACGTCATCCAAAACATCTGGGTCTATATTTTTTTCTTTTGAGTTACAAACTTGTGCATGATCTCAAAATGTGTGAATTCTAGCTTAGGCTCCAATTTAAAAGAACTTTGAATTACAAACTTTTGTGAATAATCTCAAAACGCACGATTTCTAAAATGTACGAAAATGAAAAGAAGGGCGGAACGAATGGGATAATGAAGGACAACAGATTTCAAGGTTCCAAGTAATTAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>366 252 215 136 19 12</canonical_bands>
                <polymorphic_bands>581 252 136 19 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGACAGTACGGACAGAGAAATA</pcr_primer_p1>
		<pcr_primer_p2>GACGGGACAGTGTCTATAAATC</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>CAGACAGTACGGACAGAGAAATAGTACGGAAAGGAGAAGACACGCAGATAGTTAAAACGGAGAACAGAACAGTAATGGGGGTTGGGTGGGGGTGTGAGAGCGCTTGTTGGCGGACAGACGGGGGACAGTAGTACACCCGATGCGGGAGAGAGGGGGTGTCTTATGTCCGTATGGTATATACGGACTGAAGGGGTAACAGATGAAGGCTCCTGTTGATTTATAGACACTGTCCCGTC</canonical_amplicon>
		<polymorphic_amplicon>CAGACAGTACGGACAGAGAAATAGTACGGAAAGGAGAAGACACGCAGATAGTTMAAACGGAGAACAGAACAGTAATGGGGGTTGGGTGGGGGTGTGAGAGCGCTTGTTGGCGGACAGACGGGGGACAGTAGTACACCCGATGCGGGAGAGAGGGGGTGTCTTATGTCCGTATGGTATATACGGACTGAAGGGGTAACAGATGAAGGCTCCTGTTGATTTATAGACACTGTCCCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17826</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>54897</contig_pos>
        <strand></strand>
        <context>TTTTTTGATA[C/T]CCCTAGACTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGGTGAGTTCTTCAGCTAAACCACGTGGAAGCGCTTTTTTTTTTGATA</left_flank>
        <right_flank>CCCTAGACTTCTGCGAAAGTGACCTATTTATTATATTTCAGCCGCTCTTA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATATCTCTTGTTACAATTTATGGTTTAGAACCTTTCCGCGCGAATACTTTTAACAGATAACAATTTACATATCACTTATACTCCATCTATTTAGAATCGTACATGAGCTCGAAAAATATGACGCCGCGCAGACAGATGGCTGTGAACGCTGCAATAGACAAGGATTGTCCGGTTTGCCACTGTGAGATGGTGCTTCCGACAGCAATTCCGGCGTGTGGCCACAAATTCTGCTTCCTCTGCCTTAAAGGTGTGAGCATGGCTCACTTGGGAGGGTGTCCGATTTGTCGCGGGCCAATCGATGAGAAGATTTTCAAAAAACCAAAGCAAAATCTCAATCTCAAAATGGATATGCCTGATTCACCAGCTCCATCGACAAGTAATTCAGCTGAGAAAGAAGTGAAAGAAGAGCCAGTTGACGAGGATGTCAAGCCTGATGTGAATGCGCTGAATGGTGAGTTCTTCAGCTAAACCACGTGGAAGCGCTTTTTTTTTTGATACCCCTAGACTTCTGCGAAAGTGACCTATTTATTATATTTCAGCCGCTCTTAACACCGCGTCTACTAAAATGTACTGGCTGTATCACGGACGAAATCGCGGATGGTGGCGATTCGATCCACGTGTCGAGAAAGACATTGAGGAAGCATACAACCACAGAACGCCAATCACTGAAGTCACAATTTGCGGACAGGCGTACGTCATCGACATTGCTAAAATGACACAATATCCGAAGAATAATAAGGGTGCGGCTCGAGATGTAAAGTGAGTTGCAGAAATTACGTCTTTAAATATAACACAAATTTCAGACGCGTTGACAGCAACGAATTCGACACACTCGACGTTAAGGGACTGGCTGGAGTTTTCGCTGCTTCTGGCGGTGCCGGATCATCATCCACCTAATGAACTCAGTTTTCCTGATACTCGAATCAATTAACCCGTAGACATTCCCTACTTCCCTTTCGTCTCAATATCATTACGGCATTCATTATTAAGGTCTCCCC</canonical>
            <polymorphic>TCATATCTCTTGTTACAATTTATGGTTTAGAACCTTTCCGCGCGAATACTTTTAACAGATAACAATTTACATATCACTTATACTCCATCTATTTAGAATCGTACATGAGCTCGAAAAATATGACGCCGCGCAGACAGATGGCTGTGAACGCTGCAATAGACAAGGATTGTCCGGTTTGCCACTGTGAGATGGTGCTTCCGACAGCAATTCCGGCGTGTGGCCACAAATTCTGCTTCCTCTGCCTTAAAGGTGTGAGCATGGCTCACTTGGGAGGGTGTCCGATTTGTCGCGGGCCAATCGATGAGAAGATTTTCAAAAAACCAAAGCAAAATCTCAATCTCAAAATGGATATGCCTGATTCACCAGCTCCATCGACAAGTAATTCAGCTGAGAAAGAAGTGAAAGAAGAGCCAGTTGACGAGGATGTCAAGCCTGATGTGAATGCGCTGAATGGTGAGTTCTTCAGCTAAACCACGTGGAAGCGCTTTTTTTTTTGATAYCCCTAGACTTCTGCGAAAGTGACCTATTTATTATATTTCAGCCGCTCTTAACACCGCGTCTACTAAAATGTACTGGCTGTATCACGGACGAAATCGCGGATGGTGGCGATTCGATCCACGTGTCGAGAAAGACATTGAGGAAGCATACAACCACAGAACGCCAATCACTGAAGTCACAATTTGCGGACAGGCGTACGTCATCGACATTGCTAAAATGACACAATATCCGAAGAATAATAAGGGTGCGGCTCGAGATGTAAAGTGAGTTGCAGAAATTACGTCTTTAAATATAACACAAATTTCAGACGCGTTGACAGCAACGAATTCGACACACTCGACGTTAAGGGACTGGCTGGAGTTTTCGCTGCTTCTGGCGGTGCCGGATCATCATCCACCTAATGAACTCAGTTTTCCTGATACTCGAATCAATTAACCCGTAGACATTCCCTACTTCCCTTTCGTCTCAATATCATTACGGCATTCATTATTAAGGTCTCCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACCAAAGCAAAATCTCAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTAGTAGACGCGGTGTTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACCAAAGCAAAATCTCAATCTCAAAATGGATATGCCTGATTCACCAGCTCCATCGACAAGTAATTCAGCTGAGAAAGAAGTGAAAGAAGAGCCAGTTGACGAGGATGTCAAGCCTGATGTGAATGCGCTGAATGGTGAGTTCTTCAGCTAAACCACGTGGAAGCGCTTTTTTTTTTGATACCCCTAGACTTCTGCGAAAGTGACCTATTTATTATATTTCAGCCGCTCTTAACACCGCGTCTACTAAA</canonical_amplicon>
		<polymorphic_amplicon>AAACCAAAGCAAAATCTCAATCTCAAAATGGATATGCCTGATTCACCAGCTCCATCGACAAGTAATTCAGCTGAGAAAGAAGTGAAAGAAGAGCCAGTTGACGAGGATGTCAAGCCTGATGTGAATGCGCTGAATGGTGAGTTCTTCAGCTAAACCACGTGGAAGCGCTTTTTTTTTTGATAYCCCTAGACTTCTGCGAAAGTGACCTATTTATTATATTTCAGCCGCTCTTAACACCGCGTCTACTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17827</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>54811</contig_pos>
        <strand>+</strand>
        <context>AGAAGAGCCA[C/G]TTGACGAGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAGCTCCATCGACAAGTAATTCAGCTGAGAAAGAAGTGAAAGAAGAGCCA</left_flank>
        <right_flank>TTGACGAGGATGTCAAGCCTGATGTGAATGCGCTGAATGGTGAGTTCTTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCCTTTTACCTTGTTTGTTGCTGCTCCTTTTGGTTTTGATTTGTTGTGTTGGAAGTGTTATGAACTAAAAATCATAAAACTTTATCATATCTCTTGTTACAATTTATGGTTTAGAACCTTTCCGCGCGAATACTTTTAACAGATAACAATTTACATATCACTTATACTCCATCTATTTAGAATCGTACATGAGCTCGAAAAATATGACGCCGCGCAGACAGATGGCTGTGAACGCTGCAATAGACAAGGATTGTCCGGTTTGCCACTGTGAGATGGTGCTTCCGACAGCAATTCCGGCGTGTGGCCACAAATTCTGCTTCCTCTGCCTTAAAGGTGTGAGCATGGCTCACTTGGGAGGGTGTCCGATTTGTCGCGGGCCAATCGATGAGAAGATTTTCAAAAAACCAAAGCAAAATCTCAATCTCAAAATGGATATGCCTGATTCACCAGCTCCATCGACAAGTAATTCAGCTGAGAAAGAAGTGAAAGAAGAGCCAGTTGACGAGGATGTCAAGCCTGATGTGAATGCGCTGAATGGTGAGTTCTTCAGCTAAACCACGTGGAAGCGCTTTTTTTTTTGATACCCCTAGACTTCTGCGAAAGTGACCTATTTATTATATTTCAGCCGCTCTTAACACCGCGTCTACTAAAATGTACTGGCTGTATCACGGACGAAATCGCGGATGGTGGCGATTCGATCCACGTGTCGAGAAAGACATTGAGGAAGCATACAACCACAGAACGCCAATCACTGAAGTCACAATTTGCGGACAGGCGTACGTCATCGACATTGCTAAAATGACACAATATCCGAAGAATAATAAGGGTGCGGCTCGAGATGTAAAGTGAGTTGCAGAAATTACGTCTTTAAATATAACACAAATTTCAGACGCGTTGACAGCAACGAATTCGACACACTCGACGTTAAGGGACTGGCTGGAGTTTTCGCTGCTTCTGGCGGTGCCGGATCATCATCCACCTAATGAACTCAGTTTTCC</canonical>
            <polymorphic>TTTCCTTTTACCTTGTTTGTTGCTGCTCCTTTTGGTTTTGATTTGTTGTGTTGGAAGTGTTATGAACTAAAAATCATAAAACTTTATCATATCTCTTGTTACAATTTATGGTTTAGAACCTTTCCGCGCGAATACTTTTAACAGATAACAATTTACATATCACTTATACTCCATCTATTTAGAATCGTACATGAGCTCGAAAAATATGACGCCGCGCAGACAGATGGCTGTGAACGCTGCAATAGACAAGGATTGTCCGGTTTGCCACTGTGAGATGGTGCTTCCGACAGCAATTCCGGCGTGTGGCCACAAATTCTGCTTCCTCTGCCTTAAAGGTGTGAGCATGGCTCACTTGGGAGGGTGTCCGATTTGTCGCGGGCCAATCGATGAGAAGATTTTCAAAAAACCAAAGCAAAATCTCAATCTCAAAATGGATATGCCTGATTCACCAGCTCCATCGACAAGTAATTCAGCTGAGAAAGAAGTGAAAGAAGAGCCASTTGACGAGGATGTCAAGCCTGATGTGAATGCGCTGAATGGTGAGTTCTTCAGCTAAACCACGTGGAAGCGCTTTTTTTTTTGATACCCCTAGACTTCTGCGAAAGTGACCTATTTATTATATTTCAGCCGCTCTTAACACCGCGTCTACTAAAATGTACTGGCTGTATCACGGACGAAATCGCGGATGGTGGCGATTCGATCCACGTGTCGAGAAAGACATTGAGGAAGCATACAACCACAGAACGCCAATCACTGAAGTCACAATTTGCGGACAGGCGTACGTCATCGACATTGCTAAAATGACACAATATCCGAAGAATAATAAGGGTGCGGCTCGAGATGTAAAGTGAGTTGCAGAAATTACGTCTTTAAATATAACACAAATTTCAGACGCGTTGACAGCAACGAATTCGACACACTCGACGTTAAGGGACTGGCTGGAGTTTTCGCTGCTTCTGGCGGTGCCGGATCATCATCCACCTAATGAACTCAGTTTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>502 396 102</canonical_bands>
                <polymorphic_bands>898 102</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>270 252 232 144 102</canonical_bands>
                <polymorphic_bands>414 252 232 102</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACCAAAGCAAAATCTCAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTAGTAGACGCGGTGTTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACCAAAGCAAAATCTCAATCTCAAAATGGATATGCCTGATTCACCAGCTCCATCGACAAGTAATTCAGCTGAGAAAGAAGTGAAAGAAGAGCCAGTTGACGAGGATGTCAAGCCTGATGTGAATGCGCTGAATGGTGAGTTCTTCAGCTAAACCACGTGGAAGCGCTTTTTTTTTTGATACCCCTAGACTTCTGCGAAAGTGACCTATTTATTATATTTCAGCCGCTCTTAACACCGCGTCTACTAAA</canonical_amplicon>
		<polymorphic_amplicon>AAACCAAAGCAAAATCTCAATCTCAAAATGGATATGCCTGATTCACCAGCTCCATCGACAAGTAATTCAGCTGAGAAAGAAGTGAAAGAAGAGCCASTTGACGAGGATGTCAAGCCTGATGTGAATGCGCTGAATGGTGAGTTCTTCAGCTAAACCACGTGGAAGCGCTTTTTTTTTTGATACCCCTAGACTTCTGCGAAAGTGACCTATTTATTATATTTCAGCCGCTCTTAACACCGCGTCTACTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17828</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>70355</contig_pos>
        <strand>+</strand>
        <context>TAGGTGCATG[A/G]CATTCCGGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGATAGCACACTATCCTTGCTGTGTGTTGAAGCCAATCCGTAGGTGCATG</left_flank>
        <right_flank>CATTCCGGAGATTCTATGATAGAGGCTAACTCCAGTGACCTGTTCTGCAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGAAAATCGCAGACTTGTACCAATCTGGTAACTTGTCATGGGTTAGAATAGGTGACTGCCATTTCTCGATCTCCTCTTCCCATTTGTGTCGTAGTCTCAACGCACGAACACAGAGAGAATCTGCAGCACTTCCAGCTTCACTGGCTTCGAAGAATCTGGTGTACCTTCTGTGATAACTGCGCCCAGTGGATCCGAAATGTACTTTTGGCATATCCCAACTCAACGCGTAGTCATGCGTTTTAGACGATAATGGGGGAAGAGTGAATCGATTGCTGACGGCTACAGCCATCTCGCGAGCGTTGATAGCGCATTCTTCCTCCTGAAAAACAATCATTGATAGATTAATGATCTATTGATAGAACTCACCAAGCTGGGAACATCTCCGGTTTGCATTAAATGATTCCAAAGTGCTCCTCCACTTTTCGATGGATCGAATCTCTCACAAACCGATAGCACACTATCCTTGCTGTGTGTTGAAGCCAATCCGTAGGTGCATGACATTCCGGAGATTCTATGATAGAGGCTAACTCCAGTGACCTGTTCTGCAGAATCTTCTGGAGTCTCAAACATCACCGCAGAACACTCGGCTTCTCGTTCCCATCTTCTATTTCCAGTTCCGTTGCGGAATGTGAAGGCTACCGAAACATCGTATTCTCTGTCGTTTGTAGTGTTCTCGACATCGATCAGAAAAAGGCAAACAGGATAGGTGGTATCTTCATAATTGTTAGGAAGCACTGGAGACACTTGTCTAATAACCACAGTCAATCCCAAGTCTGGTATTCTGAATGTGGTCCACGATCTTGGGAACAATCCTCTGTAGTGCACATTCTTTTTTGGGAATCCAAAATCCCACGTGGACAGTTGTCCAGACGATCGGTGAACATCGGCGGCGGAGAGCACTTTTTGATAGATACATCTGTCATTTTCCCGCACGGAGAGAATAAATTGGTCAGCGGCAACGACGTCAACTTTGTGTTCTACGAGGCCCGGACGAAGAC</canonical>
            <polymorphic>ATTGAAAATCGCAGACTTGTACCAATCTGGTAACTTGTCATGGGTTAGAATAGGTGACTGCCATTTCTCGATCTCCTCTTCCCATTTGTGTCGTAGTCTCAACGCACGAACACAGAGAGAATCTGCAGCACTTCCAGCTTCACTGGCTTCGAAGAATCTGGTGTACCTTCTGTGATAACTGCGCCCAGTGGATCCGAAATGTACTTTTGGCATATCCCAACTCAACGCGTAGTCATGCGTTTTAGACGATAATGGGGGAAGAGTGAATCGATTGCTGACGGCTACAGCCATCTCGCGAGCGTTGATAGCGCATTCTTCCTCCTGAAAAACAATCATTGATAGATTAATGATCTATTGATAGAACTCACCAAGCTGGGAACATCTCCGGTTTGCATTAAATGATTCCAAAGTGCTCCTCCACTTTTCGATGGATCGAATCTCTCACAAACCGATAGCACACTATCCTTGCTGTGTGTTGAAGCCAATCCGTAGGTGCATGRCATTCCGGAGATTCTATGATAGAGGCTAACTCCAGTGACCTGTTCTGCAGAATCTTCTGGAGTCTCAAACATCACCGCAGAACACTCGGCTTCTCGTTCCCATCTTCTATTTCCAGTTCCGTTGCGGAATGTGAAGGCTACCGAAACATCGTATTCTCTGTCGTTTGTAGTGTTCTCGACATCGATCAGAAAAAGGCAAACAGGATAGGTGGTATCTTCATAATTGTTAGGAAGCACTGGAGACACTTGTCTAATAACCACAGTCAATCCCAAGTCTGGTATTCTGAATGTGGTCCACGATCTTGGGAACAATCCTCTGTAGTGCACATTCTTTTTTGGGAATCCAAAATCCCACGTGGACAGTTGTCCAGACGATCGGTGAACATCGGCGGCGGAGAGCACTTTTTGATAGATACATCTGTCATTTTCCCGCACGGAGAGAATAAATTGGTCAGCGGCAACGACGTCAACTTTGTGTTCTACGAGGCCCGGACGAAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGGATCGAATCTCTCACAA</pcr_primer_p1>
		<pcr_primer_p2>GAACACTACAAACGACAGAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATGGATCGAATCTCTCACAAACCGATAGCACACTATCCTTGCTGTGTGTTGAAGCCAATCCGTAGGTGCATGACATTCCGGAGATTCTATGATAGAGGCTAACTCCAGTGACCTGTTCTGCAGAATCTTCTGGAGTCTCAAACATCACCGCAGAACACTCGGCTTCTCGTTCCCATCTTCTATTTCCAGTTCCGTTGCGGAATGTGAAGGCTACCGAAACATCGTATTCTCTGTCGTTTGTAGTGTTC</canonical_amplicon>
		<polymorphic_amplicon>ATGGATCGAATCTCTCACAAACCGATAGCACACTATCCTTGCTGTGTGTTGAAGCCAATCCGTAGGTGCATGRCATTCCGGAGATTCTATGATAGAGGCTAACTCCAGTGACCTGTTCTGCAGAATCTTCTGGAGTCTCAAACATCACCGCAGAACACTCGGCTTCTCGTTCCCATCTTCTATTTCCAGTTCCGTTGCGGAATGTGAAGGCTACCGAAACATCGTATTCTCTGTCGTTTGTAGTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17833</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>83678</contig_pos>
        <strand></strand>
        <context>ttttaatttt[A/T]aaaaCTCACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGACCCCTTCTGACCTCCTCCACTCTGCAAGTTTTAAATTTTTTAATTTT</left_flank>
        <right_flank>AAAACTCACGGAAAATAGTTTTCCGGTTCGAACTGATTGCTTCCGTGCTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTACACAAGTTTTCTTTCTTTTACTCTGGTTGGGAACACACTTTTAGATGAGCACACACTTTTCGATACTTGTTGCTTTTGGCCGAGATGAAGGAGGTGGTGCAGAGGGGGGTAAAATAGTTTTGAACGGATTTGAGAATTTATATTTACTTTATGCTATAGTTTTTGATCTATGTGTTTGATTGAATCAAATGTTAAAATTAATGTTAAAGGTTAAAATTTACATGTAGGCTTGGCCAATATAAATTAATGTGAAGCCCAATGAGCATTTTTAGCATTGATCTTGCTATAGTTCTAGTAGTAAGAAGGAAGCTGAAAGTTCTATGCATTCCAAAAACTTCAGCTAAAGTCATTAAATTGTCCCTAAACATATAAACGTTAAAATTTCTCATTCAGTCTGCTTCTTTTAAACTCTCAAATACTTCAACATGAATCGGCTCAAACTCAGACCCCTTCTGACCTCCTCCACTCTGCAAGTTTTAAATTTTTTAATTTTAAAAACTCACGGAAAATAGTTTTCCGGTTCGAACTGATTGCTTCCGTGCTCCTTGAGATGAAAAGAAGTAGGAATATAATGTGGAATAAGTACATTTTTTGTCATCTCATCTGGACGTAAATCCGGAATTCTGAAGTAGAAAAATGATGATAGGGTCAGTGTCCAAAAAGGAAAAGGAATAGATGGAAAGAGAAGAGAAACTACGAATCTGGTGTGGGAGAGAATTAAATAATGACATTTTATCGGAGGAGGATCTGTTTAGAGAGAAGAAGAAGGAGCATAAGAAGAAGAAGAAAGAGAAGAAGTTGAAAGTGGAAATAGCATCCTTTGAGGAAAAAAACACTGAAAAGGAGAATAGATGAACGCTAGCAAATGAAAAGAAAAAAGAAAAGAGGGTGAAGAATAAGAAAAATGTTTGGGGTATGTTGTGTGCCCAAAAAGCAAAAAAACGAGGGGAAGAGGTCCTCCGGAAGAAATAGATTATTATGGGAAGAGAGGAAG</canonical>
            <polymorphic>TTTTTACACAAGTTTTCTTTCTTTTACTCTGGTTGGGAACACACTTTTAGATGAGCACACACTTTTCGATACTTGTTGCTTTTGGCCGAGATGAAGGAGGTGGTGCAGAGGGGGGTAAAATAGTTTTGAACGGATTTGAGAATTTATATTTACTTTATGCTATAGTTTTTGATCTATGTGTTTGATTGAATCAAATGTTAAAATTAATGTTAAAGGTTAAAATTTACATGTAGGCTTGGCCAATATAAATTAATGTGAAGCCCAATGAGCATTTTTAGCATTGATCTTGCTATAGTTCTAGTAGTAAGAAGGAAGCTGAAAGTTCTATGCATTCCAAAAACTTCAGCTAAAGTCATTAAATTGTCCCTAAACATATAAACGTTAAAATTTCTCATTCAGTCTGCTTCTTTTAAACTCTCAAATACTTCAACATGAATCGGCTCAAACTCAGACCCCTTCTGACCTCCTCCACTCTGCAAGTTTTAAATTTTTTAATTTTWAAAACTCACGGAAAATAGTTTTCCGGTTCGAACTGATTGCTTCCGTGCTCCTTGAGATGAAAAGAAGTAGGAATATAATGTGGAATAAGTACATTTTTTGTCATCTCATCTGGACGTAAATCCGGAATTCTGAAGTAGAAAAATGATGATAGGGTCAGTGTCCAAAAAGGAAAAGGAATAGATGGAAAGAGAAGAGAAACTACGAATCTGGTGTGGGAGAGAATTAAATAATGACATTTTATCGGAGGAGGATCTGTTTAGAGAGAAGAAGAAGGAGCATAAGAAGAAGAAGAAAGAGAAGAAGTTGAAAGTGGAAATAGCATCCTTTGAGGAAAAAAACACTGAAAAGGAGAATAGATGAACGCTAGCAAATGAAAAGAAAAAAGAAAAGAGGGTGAAGAATAAGAAAAATGTTTGGGGTATGTTGTGTGCCCAAAAAGCAAAAAAACGAGGGGAAGAGGTCCTCCGGAAGAAATAGATTATTATGGGAAGAGAGGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 411 73 15</canonical_bands>
                <polymorphic_bands>516 411 73</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>276 226 198 106 73 33 28 26 9 7 6 6 6</canonical_bands>
                <polymorphic_bands>276 232 198 106 73 33 28 26 9 7 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTCTCAAATACTTCAACATGA</pcr_primer_p1>
		<pcr_primer_p2>CTGACCCTATCATCATTTTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAACTCTCAAATACTTCAACATGAATCGGCTCAAACTCAGACCCCTTCTGACCTCCTCCACTCTGCAAGTTTTAAATTTTTTAATTTTAAAAACTCACGGAAAATAGTTTTCCGGTTCGAACTGATTGCTTCCGTGCTCCTTGAGATGAAAAGAAGTAGGAATATAATGTGGAATAAGTACATTTTTTGTCATCTCATCTGGACGTAAATCCGGAATTCTGAAGTAGAAAAATGATGATAGGGTCAG</canonical_amplicon>
		<polymorphic_amplicon>AAACTCTCAAATACTTCAACATGAATCGGCTCAAACTCAGACCCCTTCTGACCTCCTCCACTCTGCAAGTTTTAAATTTTTTAATTTTWAAAACTCACGGAAAATAGTTTTCCGGTTCGAACTGATTGCTTCCGTGCTCCTTGAGATGAAAAGAAGTAGGAATATAATGTGGAATAAGTACATTTTTTGTCATCTCATCTGGACGTAAATCCGGAATTCTGAAGTAGAAAAATGATGATAGGGTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17853</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>84418</contig_pos>
        <strand></strand>
        <context>TCTGTGATGT[T/G]AKAGGAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AATGAGATTGAAGATTAGAAGGTGGTTGAGGAATGGCTAGTCTGTGATGT</left_flank>
        <right_flank>AAAGGAAATTTCAGAAATACTGAAAGCTTCAATTTTGACCAAAACCATAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGGAGGAGGATCTGTTTAGAGAGAAGAAGAAGGAGCATAAGAAGAAGAAGAAAGAGAAGAAGTTGAAAGTGGAAATAGCATCCTTTGAGGAAAAAAACACTGAAAAGGAGAATAGATGAACGCTAGCAAATGAAAAGAAAAAAGAAAAGAGGGTGAAGAATAAGAAAAATGTTTGGGGTATGTTGTGTGCCCAAAAAGCAAAAAAACGAGGGGAAGAGGTCCTCCGGAAGAAATAGATTATTATGGGAAGAGAGGAAGAGAGGCAAGAGGGCAATGATGATGATGTTGGAGAAGGAAGAACATATATATGTGGGAGAATATGGAAAACGGGAGGAGGAAGAAAGAAGAAAGAAGATGATGGAGATGGCATGAATCCCATTATGACTTCTGGAGCAGAAGTCGGTTCGCTGGGTAAGACCGAGGGTTTTAGCGAAATAAGAATTGGGAAATGAGATTGAAGATTAGAAGGTGGTTGAGGAATGGCTAGTCTGTGATGTTAAAGGAAATTTCAGAAATACTGAAAGCTTCAATTTTGACCAAAACCATAAAAGGTTAGAATCGAAAGAAGTTTCAAATTCAATAGTAAACTCAAGGCTTTACAATAACAGGAAGACGATAGAAAGAAAAGGTCCTCTAACAGTTTAGATTGAATTGTTGGAATGCTTTGTTTTGAGAGACTAGACTTTCCAAAACTAGTATCAAAAGGGACCAAATTTAAAACAAAATTTGAAAAACTGATTTTTAAAATTGAATTAGGGGTGGTGGGACATAAAACTAAATCTTTGAAAGTTATTATCCATATTTAGGCTACTCAGTTGTTCTAAAAACTAACATTTTGTAACATACAAACATACACACGGGGCAATTTCCTTTGCACATGTGTTAAGGGCTCAAACGTAACAGATGCTACTTTGTGCAGGAATCTCAGAAAAAATTGACCCTTCGGTGTAGGAGAAGTTTTCCCCATTTCTCAAGTTGCTAGACTCAATGTCCAAATA</canonical>
            <polymorphic>ATCGGAGGAGGATCTGTTTAGAGAGAAGAAGAAGGAGCATAAGAAGAAGAAGAAAGAGAAGAAGTTGAAAGTGGAAATAGCATCCTTTGAGGAAAAAAACACTGAAAAGGAGAATAGATGAACGCTAGCAAATGAAAAGAAAAAAGAAAAGAGGGTGAAGAATAAGAAAAATGTTTGGGGTATGTTGTGTGCCCAAAAAGCAAAAAAACGAGGGGAAGAGGTCCTCCGGAAGAAATAGATTATTATGGGAAGAGAGGAAGAGAGGCAAGAGGGCAATGATGATGATGTTGGAGAAGGAAGAACATATATATGTGGGAGAATATGGAAAACGGGAGGAGGAAGAAAGAAGAAAGAAGATGATGGAGATGGCATGAATCCCATTATGACTTCTGGAGCAGAAGTCGGTTCGCTGGGTAAGACCGAGGGTTTTAGCGAAATAAGAATTGGGAAATGAGATTGAAGATTAGAAGGTGGTTGAGGAATGGCTAGTCTGTGATGTKAAAGGAAATTTCAGAAATACTGAAAGCTTCAATTTTGACCAAAACCATAAAAGGTTAGAATCGAAAGAAGTTTCAAATTCAATAGTAAACTCAAGGCTTTACAATAACAGGAAGACGATAGAAAGAAAAGGTCCTCTAACAGTTTAGATTGAATTGTTGGAATGCTTTGTTTTGAGAGACTAGACTTTCCAAAACTAGTATCAAAAGGGACCAAATTTAAAACAAAATTTGAAAAACTGATTTTTAAAATTGAATTAGGGGTGGTGGGACATAAAACTAAATCTTTGAAAGTTATTATCCATATTTAGGCTACTCAGTTGTTCTAAAAACTAACATTTTGTAACATACAAACATACACACGGGGCAATTTCCTTTGCACATGTGTTAAGGGCTCAAACGTAACAGATGCTACTTTGTGCAGGAATCTCAGAAAAAATTGACCCTTCGGTGTAGGAGAAGTTTTCCCCATTTCTCAAGTTGCTAGACTCAATGTCCAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>499 218 141 115 27</canonical_bands>
                <polymorphic_bands>717 141 115 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATAAGAATTGGGAAATGAGAT</pcr_primer_p1>
		<pcr_primer_p2>TAGTCTCTCAAAACAAAGCATTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAATAAGAATTGGGAAATGAGATTGAAGATTAGAAGGTGGTTGAGGAATGGCTAGTCTGTGATGTTAAAGGAAATTTCAGAAATACTGAAAGCTTCAATTTTGACCAAAACCATAAAAGGTTAGAATCGAAAGAAGTTTCAAATTCAATAGTAAACTCAAGGCTTTACAATAACAGGAAGACGATAGAAAGAAAAGGTCCTCTAACAGTTTAGATTGAATTGTTGGAATGCTTTGTTTTGAGAGACTA</canonical_amplicon>
		<polymorphic_amplicon>AAATAAGAATTGGGAAATGAGATTGAAGATTAGAAGGTGGTTGAGGAATGGCTAGTCTGTGATGTKAAAGGAAATTTCAGAAATACTGAAAGCTTCAATTTTGACCAAAACCATAAAAGGTTAGAATCGAAAGAAGTTTCAAATTCAATAGTAAACTCAAGGCTTTACAATAACAGGAAGACGATAGAAAGAAAAGGTCCTCTAACAGTTTAGATTGAATTGTTGGAATGCTTTGTTTTGAGAGACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17854</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>103136</contig_pos>
        <strand>+</strand>
        <context>TCAGATTTGC[A/C]TTCGTTTGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGGGAGTAGTTGTTGGTTACTAGAAGTATTATAGGATTCTCAGATTTGC</left_flank>
        <right_flank>TTCGTTTGGATTCAACGGCTATGACATTGTGGCGAAAATGAGAAAAGTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGCAACTCACTGAGCCCATCGTGTGTCTCGCCCTCTTCGTAGAGCATCTTAGCTGCACTAGAAGTTGGCGGTGGAGGAGGTGATGATTGCATTCGTTGGATTCGTTTTTTTTCACATCGACAACAAAGTTAGATGTTTATGGGGTTCTGGAAATGAGAAGCTTGAAAATAAGTTATTGTTTATAAACAAGTTGAGAAAAAAGTTGGGAGAAGTGAATAAACATTTTTCCAAAAAACAGACGATACAATGTATATTGGTGATTGAAGAACACAAAAAAATGTGGGGAGTAGTAATTTTTGCTTTTTCCGTCTATTTGAGCTTCTGAGTCGTCGGCGGGGTAGTTTTTTTGGGGGAGAATGAAACACACAAACTTTTTTTTTTCTTAATTCTGTTGTTAAATAGACAAGGCGATGGCGACGAGCAGAACAGAGGCAATGGCAATTCAGGGAAGGGAGTAGTTGTTGGTTACTAGAAGTATTATAGGATTCTCAGATTTGCCTTCGTTTGGATTCAACGGCTATGACATTGTGGCGAAAATGAGAAAAGTCAATTCGTAGTGTTATATTTAAATCATGTGCAATAAAAACTCATCGGGGCAATTGAAAGAATCATCTTTCGGGCAGTGTATGCTGGCACACTTCCCATGTTTGCTAGGAAATAAAAAAATTAATCACAATTTACAACTGGAATCAGTGACCACACCAGAATAACTTTTGTTATTAATTGATGAAAGCATACGAAAAAAACTTTCTGATCAAAGAAATACTCTGAAGGAATCGAAATGAAATTTCCAAGCGTTCGAAAAATTTAGGATCAAAGACTGAAGCTGGTGGAATCTGAAGTTCTTATAGCCATCTGAAGAGGATGAAAAGAATAACGAGTAAGTCGACAAAAAACGACTGCTCAAACCATTGAACTCGAAGTGCCTGTGTGAACTTGAACTTTTTTGCCGATTCGTTTCAATCATCATCATCATCTATCGGTATCCCCTTTGCCCCT</canonical>
            <polymorphic>CGGCAACTCACTGAGCCCATCGTGTGTCTCGCCCTCTTCGTAGAGCATCTTAGCTGCACTAGAAGTTGGCGGTGGAGGAGGTGATGATTGCATTCGTTGGATTCGTTTTTTTTCACATCGACAACAAAGTTAGATGTTTATGGGGTTCTGGAAATGAGAAGCTTGAAAATAAGTTATTGTTTATAAACAAGTTGAGAAAAAAGTTGGGAGAAGTGAATAAACATTTTTCCAAAAAACAGACGATACAATGTATATTGGTGATTGAAGAACACAAAAAAATGTGGGGAGTAGTAATTTTTGCTTTTTCCGTCTATTTGAGCTTCTGAGTCGTCGGCGGGGTAGTTTTTTTGGGGGAGAATGAAACACACAAACTTTTTTTTTTCTTAATTCTGTTGTTAAATAGACAAGGCGATGGCGACGAGCAGAACAGAGGCAATGGCAATTCAGGGAAGGGAGTAGTTGTTGGTTACTAGAAGTATTATAGGATTCTCAGATTTGCMTTCGTTTGGATTCAACGGCTATGACATTGTGGCGAAAATGAGAAAAGTCAATTCGTAGTGTTATATTTAAATCATGTGCAATAAAAACTCATCGGGGCAATTGAAAGAATCATCTTTCGGGCAGTGTATGCTGGCACACTTCCCATGTTTGCTAGGAAATAAAAAAATTAATCACAATTTACAACTGGAATCAGTGACCACACCAGAATAACTTTTGTTATTAATTGATGAAAGCATACGAAAAAAACTTTCTGATCAAAGAAATACTCTGAAGGAATCGAAATGAAATTTCCAAGCGTTCGAAAAATTTAGGATCAAAGACTGAAGCTGGTGGAATCTGAAGTTCTTATAGCCATCTGAAGAGGATGAAAAGAATAACGAGTAAGTCGACAAAAAACGACTGCTCAAACCATTGAACTCGAAGTGCCTGTGTGAACTTGAACTTTTTTGCCGATTCGTTTCAATCATCATCATCATCTATCGGTATCCCCTTTGCCCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGGGAGTAGTTGTTGGTTAC</pcr_primer_p1>
		<pcr_primer_p2>CACTGATTCCAGTTGTAAATTGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAGGGAGTAGTTGTTGGTTACTAGAAGTATTATAGGATTCTCAGATTTGCCTTCGTTTGGATTCAACGGCTATGACATTGTGGCGAAAATGAGAAAAGTCAATTCGTAGTGTTATATTTAAATCATGTGCAATAAAAACTCATCGGGGCAATTGAAAGAATCATCTTTCGGGCAGTGTATGCTGGCACACTTCCCATGTTTGCTAGGAAATAAAAAAATTAATCACAATTTACAACTGGAATCAGTG</canonical_amplicon>
		<polymorphic_amplicon>GAAGGGAGTAGTTGTTGGTTACTAGAAGTATTATAGGATTCTCAGATTTGCMTTCGTTTGGATTCAACGGCTATGACATTGTGGCGAAAATGAGAAAAGTCAATTCGTAGTGTTATATTTAAATCATGTGCAATAAAAACTCATCGGGGCAATTGAAAGAATCATCTTTCGGGCAGTGTATGCTGGCACACTTCCCATGTTTGCTAGGAAATAAAAAAATTAATCACAATTTACAACTGGAATCAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17855</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>103179</contig_pos>
        <strand>+</strand>
        <context>CGAAAATGAG[A/G]AAAGTCAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTTGCCTTCGTTTGGATTCAACGGCTATGACATTGTGGCGAAAATGAG</left_flank>
        <right_flank>AAAGTCAATTCGTAGTGTTATATTTAAATCATGTGCAATAAAAACTCATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCATCTTAGCTGCACTAGAAGTTGGCGGTGGAGGAGGTGATGATTGCATTCGTTGGATTCGTTTTTTTTCACATCGACAACAAAGTTAGATGTTTATGGGGTTCTGGAAATGAGAAGCTTGAAAATAAGTTATTGTTTATAAACAAGTTGAGAAAAAAGTTGGGAGAAGTGAATAAACATTTTTCCAAAAAACAGACGATACAATGTATATTGGTGATTGAAGAACACAAAAAAATGTGGGGAGTAGTAATTTTTGCTTTTTCCGTCTATTTGAGCTTCTGAGTCGTCGGCGGGGTAGTTTTTTTGGGGGAGAATGAAACACACAAACTTTTTTTTTTCTTAATTCTGTTGTTAAATAGACAAGGCGATGGCGACGAGCAGAACAGAGGCAATGGCAATTCAGGGAAGGGAGTAGTTGTTGGTTACTAGAAGTATTATAGGATTCTCAGATTTGCCTTCGTTTGGATTCAACGGCTATGACATTGTGGCGAAAATGAGAAAAGTCAATTCGTAGTGTTATATTTAAATCATGTGCAATAAAAACTCATCGGGGCAATTGAAAGAATCATCTTTCGGGCAGTGTATGCTGGCACACTTCCCATGTTTGCTAGGAAATAAAAAAATTAATCACAATTTACAACTGGAATCAGTGACCACACCAGAATAACTTTTGTTATTAATTGATGAAAGCATACGAAAAAAACTTTCTGATCAAAGAAATACTCTGAAGGAATCGAAATGAAATTTCCAAGCGTTCGAAAAATTTAGGATCAAAGACTGAAGCTGGTGGAATCTGAAGTTCTTATAGCCATCTGAAGAGGATGAAAAGAATAACGAGTAAGTCGACAAAAAACGACTGCTCAAACCATTGAACTCGAAGTGCCTGTGTGAACTTGAACTTTTTTGCCGATTCGTTTCAATCATCATCATCATCTATCGGTATCCCCTTTGCCCCTCTTATCCGATCTTTTCAATATTTACCGACCATAAGAAATGTTT</canonical>
            <polymorphic>AGCATCTTAGCTGCACTAGAAGTTGGCGGTGGAGGAGGTGATGATTGCATTCGTTGGATTCGTTTTTTTTCACATCGACAACAAAGTTAGATGTTTATGGGGTTCTGGAAATGAGAAGCTTGAAAATAAGTTATTGTTTATAAACAAGTTGAGAAAAAAGTTGGGAGAAGTGAATAAACATTTTTCCAAAAAACAGACGATACAATGTATATTGGTGATTGAAGAACACAAAAAAATGTGGGGAGTAGTAATTTTTGCTTTTTCCGTCTATTTGAGCTTCTGAGTCGTCGGCGGGGTAGTTTTTTTGGGGGAGAATGAAACACACAAACTTTTTTTTTTCTTAATTCTGTTGTTAAATAGACAAGGCGATGGCGACGAGCAGAACAGAGGCAATGGCAATTCAGGGAAGGGAGTAGTTGTTGGTTACTAGAAGTATTATAGGATTCTCAGATTTGCCTTCGTTTGGATTCAACGGCTATGACATTGTGGCGAAAATGAGRAAAGTCAATTCGTAGTGTTATATTTAAATCATGTGCAATAAAAACTCATCGGGGCAATTGAAAGAATCATCTTTCGGGCAGTGTATGCTGGCACACTTCCCATGTTTGCTAGGAAATAAAAAAATTAATCACAATTTACAACTGGAATCAGTGACCACACCAGAATAACTTTTGTTATTAATTGATGAAAGCATACGAAAAAAACTTTCTGATCAAAGAAATACTCTGAAGGAATCGAAATGAAATTTCCAAGCGTTCGAAAAATTTAGGATCAAAGACTGAAGCTGGTGGAATCTGAAGTTCTTATAGCCATCTGAAGAGGATGAAAAGAATAACGAGTAAGTCGACAAAAAACGACTGCTCAAACCATTGAACTCGAAGTGCCTGTGTGAACTTGAACTTTTTTGCCGATTCGTTTCAATCATCATCATCATCTATCGGTATCCCCTTTGCCCCTCTTATCCGATCTTTTCAATATTTACCGACCATAAGAAATGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGGGAGTAGTTGTTGGTTACT</pcr_primer_p1>
		<pcr_primer_p2>CACTGATTCCAGTTGTAAATTGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAGGGAGTAGTTGTTGGTTACTAGAAGTATTATAGGATTCTCAGATTTGCCTTCGTTTGGATTCAACGGCTATGACATTGTGGCGAAAATGAGAAAAGTCAATTCGTAGTGTTATATTTAAATCATGTGCAATAAAAACTCATCGGGGCAATTGAAAGAATCATCTTTCGGGCAGTGTATGCTGGCACACTTCCCATGTTTGCTAGGAAATAAAAAAATTAATCACAATTTACAACTGGAATCAGTG</canonical_amplicon>
		<polymorphic_amplicon>GAAGGGAGTAGTTGTTGGTTACTAGAAGTATTATAGGATTCTCAGATTTGCCTTCGTTTGGATTCAACGGCTATGACATTGTGGCGAAAATGAGRAAAGTCAATTCGTAGTGTTATATTTAAATCATGTGCAATAAAAACTCATCGGGGCAATTGAAAGAATCATCTTTCGGGCAGTGTATGCTGGCACACTTCCCATGTTTGCTAGGAAATAAAAAAATTAATCACAATTTACAACTGGAATCAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17856</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>103355</contig_pos>
        <strand>+</strand>
        <context>TAACTTTTGT[A/T]ATTAATTGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAATCACAATTTACAACTGGAATCAGTGACCACACCAGAATAACTTTTGT</left_flank>
        <right_flank>ATTAATTGATGAAAGCATACGAAAAAAACTTTCTGATCAAAGAAATACTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACATTTTTCCAAAAAACAGACGATACAATGTATATTGGTGATTGAAGAACACAAAAAAATGTGGGGAGTAGTAATTTTTGCTTTTTCCGTCTATTTGAGCTTCTGAGTCGTCGGCGGGGTAGTTTTTTTGGGGGAGAATGAAACACACAAACTTTTTTTTTTCTTAATTCTGTTGTTAAATAGACAAGGCGATGGCGACGAGCAGAACAGAGGCAATGGCAATTCAGGGAAGGGAGTAGTTGTTGGTTACTAGAAGTATTATAGGATTCTCAGATTTGCCTTCGTTTGGATTCAACGGCTATGACATTGTGGCGAAAATGAGAAAAGTCAATTCGTAGTGTTATATTTAAATCATGTGCAATAAAAACTCATCGGGGCAATTGAAAGAATCATCTTTCGGGCAGTGTATGCTGGCACACTTCCCATGTTTGCTAGGAAATAAAAAAATTAATCACAATTTACAACTGGAATCAGTGACCACACCAGAATAACTTTTGTTATTAATTGATGAAAGCATACGAAAAAAACTTTCTGATCAAAGAAATACTCTGAAGGAATCGAAATGAAATTTCCAAGCGTTCGAAAAATTTAGGATCAAAGACTGAAGCTGGTGGAATCTGAAGTTCTTATAGCCATCTGAAGAGGATGAAAAGAATAACGAGTAAGTCGACAAAAAACGACTGCTCAAACCATTGAACTCGAAGTGCCTGTGTGAACTTGAACTTTTTTGCCGATTCGTTTCAATCATCATCATCATCTATCGGTATCCCCTTTGCCCCTCTTATCCGATCTTTTCAATATTTACCGACCATAAGAAATGTTTGAAATGCGATCAAGTTACTTGAATTTACTCACTGTGTTTCGATATACCAGAAAGAGTCAATAATTTATTCTATATTTGTATGTTTGAGCATAAAACAACAACACAGACGAAGTTGATTTTTTGAAGGAATCAAAAAACATGTGCACAGAAGAACCCGTAGCTTTTATCAATTATTA</canonical>
            <polymorphic>AACATTTTTCCAAAAAACAGACGATACAATGTATATTGGTGATTGAAGAACACAAAAAAATGTGGGGAGTAGTAATTTTTGCTTTTTCCGTCTATTTGAGCTTCTGAGTCGTCGGCGGGGTAGTTTTTTTGGGGGAGAATGAAACACACAAACTTTTTTTTTTCTTAATTCTGTTGTTAAATAGACAAGGCGATGGCGACGAGCAGAACAGAGGCAATGGCAATTCAGGGAAGGGAGTAGTTGTTGGTTACTAGAAGTATTATAGGATTCTCAGATTTGCCTTCGTTTGGATTCAACGGCTATGACATTGTGGCGAAAATGAGAAAAGTCAATTCGTAGTGTTATATTTAAATCATGTGCAATAAAAACTCATCGGGGCAATTGAAAGAATCATCTTTCGGGCAGTGTATGCTGGCACACTTCCCATGTTTGCTAGGAAATAAAAAAATTAATCACAATTTACAACTGGAATCAGTGACCACACCAGAATAACTTTTGTWATTAATTGATGAAAGCATACGAAAAAAACTTTCTGATCAAAGAAATACTCTGAAGGAATCGAAATGAAATTTCCAAGCGTTCGAAAAATTTAGGATCAAAGACTGAAGCTGGTGGAATCTGAAGTTCTTATAGCCATCTGAAGAGGATGAAAAGAATAACGAGTAAGTCGACAAAAAACGACTGCTCAAACCATTGAACTCGAAGTGCCTGTGTGAACTTGAACTTTTTTGCCGATTCGTTTCAATCATCATCATCATCTATCGGTATCCCCTTTGCCCCTCTTATCCGATCTTTTCAATATTTACCGACCATAAGAAATGTTTGAAATGCGATCAAGTTACTTGAATTTACTCACTGTGTTTCGATATACCAGAAAGAGTCAATAATTTATTCTATATTTGTATGTTTGAGCATAAAACAACAACACAGACGAAGTTGATTTTTTGAAGGAATCAAAAAACATGTGCACAGAAGAACCCGTAGCTTTTATCAATTATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATGTTTGCTAGGAAATAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGTCGACTTACTCGTTATTCTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCATGTTTGCTAGGAAATAAAAAAATTAATCACAATTTACAACTGGAATCAGTGACCACACCAGAATAACTTTTGTTATTAATTGATGAAAGCATACGAAAAAAACTTTCTGATCAAAGAAATACTCTGAAGGAATCGAAATGAAATTTCCAAGCGTTCGAAAAATTTAGGATCAAAGACTGAAGCTGGTGGAATCTGAAGTTCTTATAGCCATCTGAAGAGGATGAAAAGAATAACGAGTAAGTCGACAA</canonical_amplicon>
		<polymorphic_amplicon>CCATGTTTGCTAGGAAATAAAAAAATTAATCACAATTTACAACTGGAATCAGTGACCACACCAGAATAACTTTTGTWATTAATTGATGAAAGCATACGAAAAAAACTTTCTGATCAAAGAAATACTCTGAAGGAATCGAAATGAAATTTCCAAGCGTTCGAAAAATTTAGGATCAAAGACTGAAGCTGGTGGAATCTGAAGTTCTTATAGCCATCTGAAGAGGATGAAAAGAATAACGAGTAAGTCGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17857</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>105179</contig_pos>
        <strand>+</strand>
        <context>AGAAAAGGAG[A/G]ACTGGACGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGCGGATGTGTATTATCCGGTTGTTGTTTTTGAAAAGAGAGAAAAGGAG</left_flank>
        <right_flank>ACTGGACGGACAGGTGTCTAAATTTGTTGTGAAAAGAAAAGAAAAACGTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCTTCCCATACCTGAAAATTTTTTTATTTCTGTTTCGGCTAAAATTTTTTAGGAGACCGTCAAAAACTGCATTTATTCGTTTTCAGATGGCATTACCCATTGATCGTTTGTATGAGTTTATATAATTATCTTGTACATTAGAATAACAAGGCCCTCGTTTTTTATACTTTTAAAGATCATTTTTAAAAGGATCCTATCTACATTCCTTATAAACTTTAACGGTTCACAAGCTTCTTAATCTTGTTCTGTCGTTTTTTTCTGTTTCCGGCCTCAATCAATCTTCTCATGTTTCAATTCCAAAAAACCCTCGAATCTATCGCTCCGATCTGTTTCGTTGAGATAGAAAGATAAACCTCGTGTTTTTTCTCAAGAAAGAGCACCTTACGAAAAATGAAAAAGCACAAACATAGAGACCCAAGCGCCGATGAGAACAGATCATGGCAGAAACGGCGGATGTGTATTATCCGGTTGTTGTTTTTGAAAAGAGAGAAAAGGAGGACTGGACGGACAGGTGTCTAAATTTGTTGTGAAAAGAAAAGAAAAACGTATTAAGTTCAATTTTAAGTGAGACGGGTGATTATTAGCCATTATCATGATTCAGGAAAAATGGATGGATAGGGCAATTTGTTTCTCTAGAATTATAATAAAGTTTCTACTTTTCTCCTCATCCTATTACACAAACAAGACACGGAGCATCTCTATGCAAATGAGAGTGCTTCTCGGCAAATGATCACCACATGCAAATACAGTTCTCAATTCACTATACTTTCGGTGAATAAATAAACTAAAGGGCTTACCTCCCCAAACTGCCCAGCACCGATTTGTCGGATGAGACGAACCGATCGACGATCTACTTCCCATTGATCATCTGAATAATTATACAGTTTAGTTCATTCAATACTAATGTTGTGGAAGTTTCCAACATGTTGAGGATGTGAATAGTACTTACCATACGTGAATGTAGATGTCTGTGGAGCTTCTGACTTGACACAAGCCTT</canonical>
            <polymorphic>GTCCTTCCCATACCTGAAAATTTTTTTATTTCTGTTTCGGCTAAAATTTTTTAGGAGACCGTCAAAAACTGCATTTATTCGTTTTCAGATGGCATTACCCATTGATCGTTTGTATGAGTTTATATAATTATCTTGTACATTAGAATAACAAGGCCCTCGTTTTTTATACTTTTAAAGATCATTTTTAAAAGGATCCTATCTACATTCCTTATAAACTTTAACGGTTCACAAGCTTCTTAATCTTGTTCTGTCGTTTTTTTCTGTTTCCGGCCTCAATCAATCTTCTCATGTTTCAATTCCAAAAAACCCTCGAATCTATCGCTCCGATCTGTTTCGTTGAGATAGAAAGATAAACCTCGTGTTTTTTCTCAAGAAAGAGCACCTTACGAAAAATGAAAAAGCACAAACATAGAGACCCAAGCGCCGATGAGAACAGATCATGGCAGAAACGGCGGATGTGTATTATCCGGTTGTTGTTTTTGAAAAGAGAGAAAAGGAGRACTGGACGGACAGGTGTCTAAATTTGTTGTGAAAAGAAAAGAAAAACGTATTAAGTTCAATTTTAAGTGAGACGGGTGATTATTAGCCATTATCATGATTCAGGAAAAATGGATGGATAGGGCAATTTGTTTCTCTAGAATTATAATAAAGTTTCTACTTTTCTCCTCATCCTATTACACAAACAAGACACGGAGCATCTCTATGCAAATGAGAGTGCTTCTCGGCAAATGATCACCACATGCAAATACAGTTCTCAATTCACTATACTTTCGGTGAATAAATAAACTAAAGGGCTTACCTCCCCAAACTGCCCAGCACCGATTTGTCGGATGAGACGAACCGATCGACGATCTACTTCCCATTGATCATCTGAATAATTATACAGTTTAGTTCATTCAATACTAATGTTGTGGAAGTTTCCAACATGTTGAGGATGTGAATAGTACTTACCATACGTGAATGTAGATGTCTGTGGAGCTTCTGACTTGACACAAGCCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATGAAAAAGCACAAACATAG</pcr_primer_p1>
		<pcr_primer_p2>TAGAGAAACAAATTGCCCTATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAATGAAAAAGCACAAACATAGAGACCCAAGCGCCGATGAGAACAGATCATGGCAGAAACGGCGGATGTGTATTATCCGGTTGTTGTTTTTGAAAAGAGAGAAAAGGAGGACTGGACGGACAGGTGTCTAAATTTGTTGTGAAAAGAAAAGAAAAACGTATTAAGTTCAATTTTAAGTGAGACGGGTGATTATTAGCCATTATCATGATTCAGGAAAAATGGATGGATAGGGCAATTTGTTTCTCTA</canonical_amplicon>
		<polymorphic_amplicon>AAAATGAAAAAGCACAAACATAGAGACCCAAGCGCCGATGAGAACAGATCATGGCAGAAACGGCGGATGTGTATTATCCGGTTGTTGTTTTTGAAAAGAGAGAAAAGGAGRACTGGACGGACAGGTGTCTAAATTTGTTGTGAAAAGAAAAGAAAAACGTATTAAGTTCAATTTTAAGTGAGACGGGTGATTATTAGCCATTATCATGATTCAGGAAAAATGGATGGATAGGGCAATTTGTTTCTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17858</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>104858</contig_pos>
        <strand>+</strand>
        <context>CTTTTAAAGA[C/T]CATTTTTAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATCTTGTACATTAGAATAACAAGGCCCTCGTTTTTTATACTTTTAAAGA</left_flank>
        <right_flank>CATTTTTAAAAGGATCCTATCTACATTCCTTATAAACTTTAACGGTTCAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATGTTTCTGGCTGCCAAGTCTCGATGAATGAAATTCATCTCCTCGAGATATGCCATTCCAGCAGCCACTTGAGCTGATATTTCAACCAGTTGTGGCATCTGATACTGCCTCCCTCTTCGTTGTAAAAATGTGAGTAAATTCTCTTGCATCAACTCGGTCACTATAAGAATCGGCTCATCTTTTGTGCAAACAGCGTACAGTGACAAAAGTTTTGGGTGTCTCAGTTTTTTCATAATCTGCGCTTCAGCAAGAAAATCGGTTGGGTCCGCTGTTCCAGCTTTCAGCTTTTTCACAGCAACTGGCAGATTTGAATTCCATCGTCCTTCCCATACCTGAAAATTTTTTTATTTCTGTTTCGGCTAAAATTTTTTAGGAGACCGTCAAAAACTGCATTTATTCGTTTTCAGATGGCATTACCCATTGATCGTTTGTATGAGTTTATATAATTATCTTGTACATTAGAATAACAAGGCCCTCGTTTTTTATACTTTTAAAGATCATTTTTAAAAGGATCCTATCTACATTCCTTATAAACTTTAACGGTTCACAAGCTTCTTAATCTTGTTCTGTCGTTTTTTTCTGTTTCCGGCCTCAATCAATCTTCTCATGTTTCAATTCCAAAAAACCCTCGAATCTATCGCTCCGATCTGTTTCGTTGAGATAGAAAGATAAACCTCGTGTTTTTTCTCAAGAAAGAGCACCTTACGAAAAATGAAAAAGCACAAACATAGAGACCCAAGCGCCGATGAGAACAGATCATGGCAGAAACGGCGGATGTGTATTATCCGGTTGTTGTTTTTGAAAAGAGAGAAAAGGAGGACTGGACGGACAGGTGTCTAAATTTGTTGTGAAAAGAAAAGAAAAACGTATTAAGTTCAATTTTAAGTGAGACGGGTGATTATTAGCCATTATCATGATTCAGGAAAAATGGATGGATAGGGCAATTTGTTTCTCTAGAATTATAATAAAGTTTCTACTTTTCTCCTCATCCTATTACA</canonical>
            <polymorphic>GAATGTTTCTGGCTGCCAAGTCTCGATGAATGAAATTCATCTCCTCGAGATATGCCATTCCAGCAGCCACTTGAGCTGATATTTCAACCAGTTGTGGCATCTGATACTGCCTCCCTCTTCGTTGTAAAAATGTGAGTAAATTCTCTTGCATCAACTCGGTCACTATAAGAATCGGCTCATCTTTTGTGCAAACAGCGTACAGTGACAAAAGTTTTGGGTGTCTCAGTTTTTTCATAATCTGCGCTTCAGCAAGAAAATCGGTTGGGTCCGCTGTTCCAGCTTTCAGCTTTTTCACAGCAACTGGCAGATTTGAATTCCATCGTCCTTCCCATACCTGAAAATTTTTTTATTTCTGTTTCGGCTAAAATTTTTTAGGAGACCGTCAAAAACTGCATTTATTCGTTTTCAGATGGCATTACCCATTGATCGTTTGTATGAGTTTATATAATTATCTTGTACATTAGAATAACAAGGCCCTCGTTTTTTATACTTTTAAAGAYCATTTTTAAAAGGATCCTATCTACATTCCTTATAAACTTTAACGGTTCACAAGCTTCTTAATCTTGTTCTGTCGTTTTTTTCTGTTTCCGGCCTCAATCAATCTTCTCATGTTTCAATTCCAAAAAACCCTCGAATCTATCGCTCCGATCTGTTTCGTTGAGATAGAAAGATAAACCTCGTGTTTTTTCTCAAGAAAGAGCACCTTACGAAAAATGAAAAAGCACAAACATAGAGACCCAAGCGCCGATGAGAACAGATCATGGCAGAAACGGCGGATGTGTATTATCCGGTTGTTGTTTTTGAAAAGAGAGAAAAGGAGGACTGGACGGACAGGTGTCTAAATTTGTTGTGAAAAGAAAAGAAAAACGTATTAAGTTCAATTTTAAGTGAGACGGGTGATTATTAGCCATTATCATGATTCAGGAAAAATGGATGGATAGGGCAATTTGTTTCTCTAGAATTATAATAAAGTTTCTACTTTTCTCCTCATCCTATTACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>424 244 134 110 73 15</canonical_bands>
                <polymorphic_bands>424 244 134 110 88</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTGATCGTTTGTATGAGTTTAT</pcr_primer_p1>
		<pcr_primer_p2>ATCTTTCTATCTCAACGAAACAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CATTGATCGTTTGTATGAGTTTATATAATTATCTTGTACATTAGAATAACAAGGCCCTCGTTTTTTATACTTTTAAAGATCATTTTTAAAAGGATCCTATCTACATTCCTTATAAACTTTAACGGTTCACAAGCTTCTTAATCTTGTTCTGTCGTTTTTTTCTGTTTCCGGCCTCAATCAATCTTCTCATGTTTCAATTCCAAAAAACCCTCGAATCTATCGCTCCGATCTGTTTCGTTGAGATAGAAAGAT</canonical_amplicon>
		<polymorphic_amplicon>CATTGATCGTTTGTATGAGTTTATATAATTATCTTGTACATTAGAATAACAAGGCCCTCGTTTTTTATACTTTTAAAGAYCATTTTTAAAAGGATCCTATCTACATTCCTTATAAACTTTAACGGTTCACAAGCTTCTTAATCTTGTTCTGTCGTTTTTTTCTGTTTCCGGCCTCAATCAATCTTCTCATGTTTCAATTCCAAAAAACCCTCGAATCTATCGCTCCGATCTGTTTCGTTGAGATAGAAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17859</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>131805</contig_pos>
        <strand>+</strand>
        <context>TATTCCCTTC[C/T]TGTGTCGTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAACTGCTTAATTGTTTTTCAGAATGGAAATTGCAGTTTTATTCCCTTC</left_flank>
        <right_flank>TGTGTCGTCGCGAAAGTCTATCTGCAGTTGCCGCTTAGAGACAAGAGAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATCTACTTTTCGAAATCCACTTCTTAATATGGAAACTTTTCTGTCTGTCTCGGACATTCACTTGAATGGCGGTACTCGATAAAAAAACTGAGTAGAATAAAACTGTAACATAGTAAAACTGGGCATAATAAAACCATACTTAACAGGCCTGGCCGGGCGGAGATGGTGTCTTGAGCCTCCTATCTAATAGGGAACCTATAGGGCTGAGAATCGAAATTTTAAATTCATACAAACTCCAGTTTCCCCAAAGTTTCAGCCTGATTGGTTCAGTCTCAGTTTTTTTCGCGGATTTTTTTGTCATTTTTTGTAGTTTTTACAGGTTGCCTGAATAACCCCATCGAATATCTTTTTCTGAGAACTTTCGTGAAGATACAATACTGTATTGTCGAGGCGAGGACCGATGTCTAACCAACACAAGCATGTTTAAGAATTGGTTTTCTTCGATTATAACTGCTTAATTGTTTTTCAGAATGGAAATTGCAGTTTTATTCCCTTCCTGTGTCGTCGCGAAAGTCTATCTGCAGTTGCCGCTTAGAGACAAGAGAAAAAAGAGAGACGCAGACGACAAGGCAACCAGTAGCCGATATCCATCGTCGTGCACTCATTTATCGAATTTCATCCGTTTTCTTCTATTTTTTCTCCGAAAACGTCTTCCAATTGATGCCACGTCATAGATATTCTGAATAAAAATAAATTAACGAAAATGGCGACTTCCGCTATGTTTATTCTGGATTTAAAGGGAAAAGTTAGAAATTGTTCGAAATTGGCTTCTAATTTTTATTTTTCTCAGACGATAATATCCCGAAATTATCGTGGCGATGTGGACATGACAACGGTCGATAAATTCATCACTTTGTTGATGGAGAAGGAAGAAGAAGGGTTGGCAGCACCGGTGCTCACTTATCAGGACACCAATTTTGTGTTCATCAAGCACACAAACATTTATTGTTAGTTTTGAGTACAAGTCGATTTCCGACATTCTTTCACACTGGATTAT</canonical>
            <polymorphic>AAAATCTACTTTTCGAAATCCACTTCTTAATATGGAAACTTTTCTGTCTGTCTCGGACATTCACTTGAATGGCGGTACTCGATAAAAAAACTGAGTAGAATAAAACTGTAACATAGTAAAACTGGGCATAATAAAACCATACTTAACAGGCCTGGCCGGGCGGAGATGGTGTCTTGAGCCTCCTATCTAATAGGGAACCTATAGGGCTGAGAATCGAAATTTTAAATTCATACAAACTCCAGTTTCCCCAAAGTTTCAGCCTGATTGGTTCAGTCTCAGTTTTTTTCGCGGATTTTTTTGTCATTTTTTGTAGTTTTTACAGGTTGCCTGAATAACCCCATCGAATATCTTTTTCTGAGAACTTTCGTGAAGATACAATACTGTATTGTCGAGGCGAGGACCGATGTCTAACCAACACAAGCATGTTTAAGAATTGGTTTTCTTCGATTATAACTGCTTAATTGTTTTTCAGAATGGAAATTGCAGTTTTATTCCCTTCYTGTGTCGTCGCGAAAGTCTATCTGCAGTTGCCGCTTAGAGACAAGAGAAAAAAGAGAGACGCAGACGACAAGGCAACCAGTAGCCGATATCCATCGTCGTGCACTCATTTATCGAATTTCATCCGTTTTCTTCTATTTTTTCTCCGAAAACGTCTTCCAATTGATGCCACGTCATAGATATTCTGAATAAAAATAAATTAACGAAAATGGCGACTTCCGCTATGTTTATTCTGGATTTAAAGGGAAAAGTTAGAAATTGTTCGAAATTGGCTTCTAATTTTTATTTTTCTCAGACGATAATATCCCGAAATTATCGTGGCGATGTGGACATGACAACGGTCGATAAATTCATCACTTTGTTGATGGAGAAGGAAGAAGAAGGGTTGGCAGCACCGGTGCTCACTTATCAGGACACCAATTTTGTGTTCATCAAGCACACAAACATTTATTGTTAGTTTTGAGTACAAGTCGATTTCCGACATTCTTTCACACTGGATTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAATTGGTTTTCTTCGATTAT</pcr_primer_p1>
		<pcr_primer_p2>ATATCTATGACGTGGCATCAA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAGAATTGGTTTTCTTCGATTATAACTGCTTAATTGTTTTTCAGAATGGAAATTGCAGTTTTATTCCCTTCCTGTGTCGTCGCGAAAGTCTATCTGCAGTTGCCGCTTAGAGACAAGAGAAAAAAGAGAGACGCAGACGACAAGGCAACCAGTAGCCGATATCCATCGTCGTGCACTCATTTATCGAATTTCATCCGTTTTCTTCTATTTTTTCTCCGAAAACGTCTTCCAATTGATGCCACGTCATAGATAT</canonical_amplicon>
		<polymorphic_amplicon>AAGAATTGGTTTTCTTCGATTATAACTGCTTAATTGTTTTTCAGAATGGAAATTGCAGTTTTATTCCCTTCYTGTGTCGTCGCGAAAGTCTATCTGCAGTTGCCGCTTAGAGACAAGAGAAAAAAGAGAGACGCAGACGACAAGGCAACCAGTAGCCGATATCCATCGTCGTGCACTCATTTATCGAATTTCATCCGTTTTCTTCTATTTTTTCTCCGAAAACGTCTTCCAATTGATGCCACGTCATAGATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17860</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>133979</contig_pos>
        <strand>+</strand>
        <context>TTTCAGACGT[C/T]TCTCAAAATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCATCTCTTAAATGGATCCGACGTGTTTTCTAAAGATGTTTTCAGACGT</left_flank>
        <right_flank>TCTCAAAATCTAAATATGATCCTCAACCTGTTTTCATCGAATTGTACGCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTACCATCTGTTATGAGTGAGGAATCAGAGGGAAGACCACCGATCAAAGTCAAGTTCGAGATTCCATACTTCACCACTTCGGGAATTCAGGTGCGTGAAGTTTAGTCAGAGGTATCTAATTTAGTTTAACGTTTCAGGTACGCTATTTGAAAATCATAGAAAAGAGTGGCTACCAAGCGCTTCCGTGGGTTCGGTATATTACGCAGAACGGAGAATACGAAATGAGAATGAAATGATAATGGAATCGTTCCCACAATGTTTATAGTATTACCCCATTTGTCTTCTAAATCTAAGATCAAACTATAATGCTCATCTATCTATTTTAATGTTCATTTTTCTTCTCTACTCAACACATGTTGTGCTTCTTGCTCTTCTTCTCCAACCAGATTGACCTCGATTCATTTTTTTCCTTTCCCCTATTTATTGATTTCTTTATTTTTGTCCTATTTCATCTCTTAAATGGATCCGACGTGTTTTCTAAAGATGTTTTCAGACGTCTCTCAAAATCTAAATATGATCCTCAACCTGTTTTCATCGAATTGTACGCTCGAAATAAATACGTTCTCATCATGAGCTAGTTTAACTGATTTCAGGTTTTCTATGAAAACTGTACAATATTTGATCTAGTGGATAAGCGGAGTAATAATGATTCGTTTGAAGAATGCATCGGACACTGATGTTTGTTGCAAGTCGATCTCTGCGAGCATCTGCTATTTCACGAACAATCACAAAAGAAAGAAGTGAAGCAAATCGACTCATGGAGCAGATAGTAGAAGACTTGAAAGTATAAAAAAGATTCTAGATATTCAAAAAATAACTATTTTTAGACGAAAGGAACGGAGTTTGTGATCCCTGGACGAGATTCGTTTGCTCGGCAAGAGTCAGCTAAAGTTTTCGAGAAACTTGTAGCGTGTGGTGTCAAATCGGAATTCCTATTAGATGCCAACACGAAGAATGCGTCGCTGTTTAAAACAGTCGTCTCACAACCTGCTGTCTCT</canonical>
            <polymorphic>CTCTACCATCTGTTATGAGTGAGGAATCAGAGGGAAGACCACCGATCAAAGTCAAGTTCGAGATTCCATACTTCACCACTTCGGGAATTCAGGTGCGTGAAGTTTAGTCAGAGGTATCTAATTTAGTTTAACGTTTCAGGTACGCTATTTGAAAATCATAGAAAAGAGTGGCTACCAAGCGCTTCCGTGGGTTCGGTATATTACGCAGAACGGAGAATACGAAATGAGAATGAAATGATAATGGAATCGTTCCCACAATGTTTATAGTATTACCCCATTTGTCTTCTAAATCTAAGATCAAACTATAATGCTCATCTATCTATTTTAATGTTCATTTTTCTTCTCTACTCAACACATGTTGTGCTTCTTGCTCTTCTTCTCCAACCAGATTGACCTCGATTCATTTTTTTCCTTTCCCCTATTTATTGATTTCTTTATTTTTGTCCTATTTCATCTCTTAAATGGATCCGACGTGTTTTCTAAAGATGTTTTCAGACGTYTCTCAAAATCTAAATATGATCCTCAACCTGTTTTCATCGAATTGTACGCTCGAAATAAATACGTTCTCATCATGAGCTAGTTTAACTGATTTCAGGTTTTCTATGAAAACTGTACAATATTTGATCTAGTGGATAAGCGGAGTAATAATGATTCGTTTGAAGAATGCATCGGACACTGATGTTTGTTGCAAGTCGATCTCTGCGAGCATCTGCTATTTCACGAACAATCACAAAAGAAAGAAGTGAAGCAAATCGACTCATGGAGCAGATAGTAGAAGACTTGAAAGTATAAAAAAGATTCTAGATATTCAAAAAATAACTATTTTTAGACGAAAGGAACGGAGTTTGTGATCCCTGGACGAGATTCGTTTGCTCGGCAAGAGTCAGCTAAAGTTTTCGAGAAACTTGTAGCGTGTGGTGTCAAATCGGAATTCCTATTAGATGCCAACACGAAGAATGCGTCGCTGTTTAAAACAGTCGTCTCACAACCTGCTGTCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACGTC</site>
                <isoschizomers>
                    <enzyme>AatII</enzyme>
                    <enzyme>ZraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCCCCTATTTATTGATTTCTT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAACGAATCATTATTACTCC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTCCCCTATTTATTGATTTCTTTATTTTTGTCCTATTTCATCTCTTAAATGGATCCGACGTGTTTTCTAAAGATGTTTTCAGACGTCTCTCAAAATCTAAATATGATCCTCAACCTGTTTTCATCGAATTGTACGCTCGAAATAAATACGTTCTCATCATGAGCTAGTTTAACTGATTTCAGGTTTTCTATGAAAACTGTACAATATTTGATCTAGTGGATAAGCGGAGTAATAATGATTCGTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCCCTATTTATTGATTTCTTTATTTTTGTCCTATTTCATCTCTTAAATGGATCCGACGTGTTTTCTAAAGATGTTTTCAGACGTYTCTCAAAATCTAAATATGATCCTCAACCTGTTTTCATCGAATTGTACGCTCGAAATAAATACGTTCTCATCATGAGCTAGTTTAACTGATTTCAGGTTTTCTATGAAAACTGTACAATATTTGATCTAGTGGATAAGCGGAGTAATAATGATTCGTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17861</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>133476</contig_pos>
        <strand>+</strand>
        <context>CACTGCACAC[C/T]TATCTCTACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGACCATCAAGAGTTTCCCAGGCGGGAAGGAATACCTTCTCACTGCACAC</left_flank>
        <right_flank>TATCTCTACCATCTGTTATGAGTGAGGAATCAGAGGGAAGACCACCGATC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAGGAGGAAAGAGTAAGTCGGTCGAGCTGGAAGATGTGAAGTTTCATCAATGTGTTCGTCTGTCTCGCTTCGATACCGATCGCACTATATCATTCATTCCCCCTGATGGCGCTTTCGAGTTGATGAGTTATAGGTGAGTAGAAGCGACCTAGAAAAAAGAAAATCATTCGAGTTCTAGACTGACTACTGTTGTGAAGCCACTGATTTGGATTGAGACAAGTATTGAGCGTCACAGTCACTCGAGAGTGTCATTTATCATCAAGGTATTTTTATTCTCTTTCTCCTACTACCTCTATCATTGATTTCAGGCAAAATCTCAATTCAAACGTCGGTCCACTGCCAACAACGTTGAAATTATCATCCCAGTCCCATCTGACGCAGATTCGCCGAAATTCAAGACCAGCATCGGATCGGTGAAATACACACCGGAGCAGAGTGCATTCGTATGGACCATCAAGAGTTTCCCAGGCGGGAAGGAATACCTTCTCACTGCACACCTATCTCTACCATCTGTTATGAGTGAGGAATCAGAGGGAAGACCACCGATCAAAGTCAAGTTCGAGATTCCATACTTCACCACTTCGGGAATTCAGGTGCGTGAAGTTTAGTCAGAGGTATCTAATTTAGTTTAACGTTTCAGGTACGCTATTTGAAAATCATAGAAAAGAGTGGCTACCAAGCGCTTCCGTGGGTTCGGTATATTACGCAGAACGGAGAATACGAAATGAGAATGAAATGATAATGGAATCGTTCCCACAATGTTTATAGTATTACCCCATTTGTCTTCTAAATCTAAGATCAAACTATAATGCTCATCTATCTATTTTAATGTTCATTTTTCTTCTCTACTCAACACATGTTGTGCTTCTTGCTCTTCTTCTCCAACCAGATTGACCTCGATTCATTTTTTTCCTTTCCCCTATTTATTGATTTCTTTATTTTTGTCCTATTTCATCTCTTAAATGGATCCGACGTGTTTTCTAAAGATGTTTTCAGAC</canonical>
            <polymorphic>TTTAGGAGGAAAGAGTAAGTCGGTCGAGCTGGAAGATGTGAAGTTTCATCAATGTGTTCGTCTGTCTCGCTTCGATACCGATCGCACTATATCATTCATTCCCCCTGATGGCGCTTTCGAGTTGATGAGTTATAGGTGAGTAGAAGCGACCTAGAAAAAAGAAAATCATTCGAGTTCTAGACTGACTACTGTTGTGAAGCCACTGATTTGGATTGAGACAAGTATTGAGCGTCACAGTCACTCGAGAGTGTCATTTATCATCAAGGTATTTTTATTCTCTTTCTCCTACTACCTCTATCATTGATTTCAGGCAAAATCTCAATTCAAACGTCGGTCCACTGCCAACAACGTTGAAATTATCATCCCAGTCCCATCTGACGCAGATTCGCCGAAATTCAAGACCAGCATCGGATCGGTGAAATACACACCGGAGCAGAGTGCATTCGTATGGACCATCAAGAGTTTCCCAGGCGGGAAGGAATACCTTCTCACTGCACACYTATCTCTACCATCTGTTATGAGTGAGGAATCAGAGGGAAGACCACCGATCAAAGTCAAGTTCGAGATTCCATACTTCACCACTTCGGGAATTCAGGTGCGTGAAGTTTAGTCAGAGGTATCTAATTTAGTTTAACGTTTCAGGTACGCTATTTGAAAATCATAGAAAAGAGTGGCTACCAAGCGCTTCCGTGGGTTCGGTATATTACGCAGAACGGAGAATACGAAATGAGAATGAAATGATAATGGAATCGTTCCCACAATGTTTATAGTATTACCCCATTTGTCTTCTAAATCTAAGATCAAACTATAATGCTCATCTATCTATTTTAATGTTCATTTTTCTTCTCTACTCAACACATGTTGTGCTTCTTGCTCTTCTTCTCCAACCAGATTGACCTCGATTCATTTTTTTCCTTTCCCCTATTTATTGATTTCTTTATTTTTGTCCTATTTCATCTCTTAAATGGATCCGACGTGTTTTCTAAAGATGTTTTCAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCAACAACGTTGAAATTAT</pcr_primer_p1>
		<pcr_primer_p2>GAAGTGGTGAAGTATGGAATCT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GCCAACAACGTTGAAATTATCATCCCAGTCCCATCTGACGCAGATTCGCCGAAATTCAAGACCAGCATCGGATCGGTGAAATACACACCGGAGCAGAGTGCATTCGTATGGACCATCAAGAGTTTCCCAGGCGGGAAGGAATACCTTCTCACTGCACACCTATCTCTACCATCTGTTATGAGTGAGGAATCAGAGGGAAGACCACCGATCAAAGTCAAGTTCGAGATTCCATACTTCACCACTTC</canonical_amplicon>
		<polymorphic_amplicon>GCCAACAACGTTGAAATTATCATCCCAGTCCCATCTGACGCAGATTCGCCGAAATTCAAGACCAGCATCGGATCGGTGAAATACACACCGGAGCAGAGTGCATTCGTATGGACCATCAAGAGTTTCCCAGGCGGGAAGGAATACCTTCTCACTGCACACYTATCTCTACCATCTGTTATGAGTGAGGAATCAGAGGGAAGACCACCGATCAAAGTCAAGTTCGAGATTCCATACTTCACCACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17863</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>137498</contig_pos>
        <strand>+</strand>
        <context>TCTGTAATTT[A/T]AAAAAAGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGACCTATTGAGACTCTTCAGACAATTATTGATCCTCCATCTGTAATTT</left_flank>
        <right_flank>AAAAAAGTTTTAATCTTTTTTCTTTCCAGTCAGATATGTGACAATTTAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACATAGAGCAAAAAATGGGGAGCCGCCCTGGCGCCAGAGAGGAGGGTACTGCGAAGCAGTTGCAAAAGGGAGTCGCGGCCACTCCGGGCGGCACGACGGAGAGGATGATGGTCTTCTTCATACATGCACACATATTCCGTTTTTCGTTTTCTGAAGGCGCCAGGCGCCTTGTTCCGTGTGGCGGCCGCAAGCATTTTTTGCACTCCCTGGGAGTGGAGGACCCCCGAGAGATTCTTTTTCGTTTTTCTCTGTTTCTAGACTCCCCTTATTGAAGAGCCTTCACGACGTCTTAATGGGCGGGACTATTGATGACGTGAGTCTTTGCGAGACTACCGTAGCCCATCTGGTGTCCAACTCGACGCTTTTATAACGTATTCTGGTGCAGTTGGAGGCCTCCCGTCCAAGTGTTTTATTAAACGGATATTGCTTCTACATACGGCAATTGACATGACCTATTGAGACTCTTCAGACAATTATTGATCCTCCATCTGTAATTTAAAAAAAGTTTTAATCTTTTTTCTTTCCAGTCAGATATGTGACAATTTAGACACTGTTTCTACTTTCAACCTCACATCAGGTAGCCAGGTGCTTTTGATTAAGATTCAAAAAGTATTCGCATTGTACTGAGGTTGCTAGAGAGACCCATAGTACCGAAATATATTTTTCCCATACCTATTATGCTTGTCTGAGAAAAAAAAGATTGAGACGCAGAGAAAAAGTGTCTGCGTCTCCTCCTTATGTGTGCTATTTAGGCTCTCCGCTTCGATATCGCTACCGTATTTAGTCTGCAAAAAATACTCTCTAACCTTTTTTTTCTCAGACAAGCATAATAGTCTGATCTTATTAGAAACTCTAGTGTCTGTAAGTTTCAGAAAATTTTCGCATGACTAGCCGGCTACCTAGTTATTATTTCTATATGAACACCTGAACTTCCGAAAATGTGAACTCCATAATTAGATTTCGAGAAGAATGCAAGTTTCCAGGCAAAAGAGAACTAA</canonical>
            <polymorphic>GAACATAGAGCAAAAAATGGGGAGCCGCCCTGGCGCCAGAGAGGAGGGTACTGCGAAGCAGTTGCAAAAGGGAGTCGCGGCCACTCCGGGCGGCACGACGGAGAGGATGATGGTCTTCTTCATACATGCACACATATTCCGTTTTTCGTTTTCTGAAGGCGCCAGGCGCCTTGTTCCGTGTGGCGGCCGCAAGCATTTTTTGCACTCCCTGGGAGTGGAGGACCCCCGAGAGATTCTTTTTCGTTTTTCTCTGTTTCTAGACTCCCCTTATTGAAGAGCCTTCACGACGTCTTAATGGGCGGGACTATTGATGACGTGAGTCTTTGCGAGACTACCGTAGCCCATCTGGTGTCCAACTCGACGCTTTTATAACGTATTCTGGTGCAGTTGGAGGCCTCCCGTCCAAGTGTTTTATTAAACGGATATTGCTTCTACATACGGCAATTGACATGACCTATTGAGACTCTTCAGACAATTATTGATCCTCCATCTGTAATTTWAAAAAAGTTTTAATCTTTTTTCTTTCCAGTCAGATATGTGACAATTTAGACACTGTTTCTACTTTCAACCTCACATCAGGTAGCCAGGTGCTTTTGATTAAGATTCAAAAAGTATTCGCATTGTACTGAGGTTGCTAGAGAGACCCATAGTACCGAAATATATTTTTCCCATACCTATTATGCTTGTCTGAGAAAAAAAAGATTGAGACGCAGAGAAAAAGTGTCTGCGTCTCCTCCTTATGTGTGCTATTTAGGCTCTCCGCTTCGATATCGCTACCGTATTTAGTCTGCAAAAAATACTCTCTAACCTTTTTTTTCTCAGACAAGCATAATAGTCTGATCTTATTAGAAACTCTAGTGTCTGTAAGTTTCAGAAAATTTTCGCATGACTAGCCGGCTACCTAGTTATTATTTCTATATGAACACCTGAACTTCCGAAAATGTGAACTCCATAATTAGATTTCGAGAAGAATGCAAGTTTCCAGGCAAAAGAGAACTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>402 292 123 88 83 12</canonical_bands>
                <polymorphic_bands>402 292 123 95 88</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTAAACGGATATTGCTTCTACA</pcr_primer_p1>
		<pcr_primer_p2>ATATTTCGGTACTATGGGTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTAAACGGATATTGCTTCTACATACGGCAATTGACATGACCTATTGAGACTCTTCAGACAATTATTGATCCTCCATCTGTAATTTAAAAAAAGTTTTAATCTTTTTTCTTTCCAGTCAGATATGTGACAATTTAGACACTGTTTCTACTTTCAACCTCACATCAGGTAGCCAGGTGCTTTTGATTAAGATTCAAAAAGTATTCGCATTGTACTGAGGTTGCTAGAGAGACCCATAGTACCGAAATAT</canonical_amplicon>
		<polymorphic_amplicon>ATTAAACGGATATTGCTTCTACATACGGCAATTGACATGACCTATTGAGACTCTTCAGACAATTATTGATCCTCCATCTGTAATTTWAAAAAAGTTTTAATCTTTTTTCTTTCCAGTCAGATATGTGACAATTTAGACACTGTTTCTACTTTCAACCTCACATCAGGTAGCCAGGTGCTTTTGATTAAGATTCAAAAAGTATTCGCATTGTACTGAGGTTGCTAGAGAGACCCATAGTACCGAAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17864</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>137259</contig_pos>
        <strand>+</strand>
        <context>CTGTTTCTAG[A/T]CTCCCCTTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGGAGTGGAGGACCCCCGAGAGATTCTTTTTCGTTTTTCTCTGTTTCTAG</left_flank>
        <right_flank>CTCCCCTTATTGAAGAGCCTTCACGACGTCTTAATGGGCGGGACTATTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTTCTTTTTTTGCAAAAAATGAGAGTAAGAAGGCCTACGGGACGACTCCCTGTGAATAGGACCGTCCACATTTTATTGTGGAGACCTTAGCATCCCGTTCCAATCCCGTTTACATTAGTAATGGCTCGTCTAAAGTCGAAACCGTAATACGCCTACATCAAACTCTTCTGATGACTTTTTCGAATCCAAATACTTCCTGTCCTTTCTCGGAAAGAAAGCGAAAAAGAGAGATGAAAGGAACATAGAGCAAAAAATGGGGAGCCGCCCTGGCGCCAGAGAGGAGGGTACTGCGAAGCAGTTGCAAAAGGGAGTCGCGGCCACTCCGGGCGGCACGACGGAGAGGATGATGGTCTTCTTCATACATGCACACATATTCCGTTTTTCGTTTTCTGAAGGCGCCAGGCGCCTTGTTCCGTGTGGCGGCCGCAAGCATTTTTTGCACTCCCTGGGAGTGGAGGACCCCCGAGAGATTCTTTTTCGTTTTTCTCTGTTTCTAGACTCCCCTTATTGAAGAGCCTTCACGACGTCTTAATGGGCGGGACTATTGATGACGTGAGTCTTTGCGAGACTACCGTAGCCCATCTGGTGTCCAACTCGACGCTTTTATAACGTATTCTGGTGCAGTTGGAGGCCTCCCGTCCAAGTGTTTTATTAAACGGATATTGCTTCTACATACGGCAATTGACATGACCTATTGAGACTCTTCAGACAATTATTGATCCTCCATCTGTAATTTAAAAAAAGTTTTAATCTTTTTTCTTTCCAGTCAGATATGTGACAATTTAGACACTGTTTCTACTTTCAACCTCACATCAGGTAGCCAGGTGCTTTTGATTAAGATTCAAAAAGTATTCGCATTGTACTGAGGTTGCTAGAGAGACCCATAGTACCGAAATATATTTTTCCCATACCTATTATGCTTGTCTGAGAAAAAAAAGATTGAGACGCAGAGAAAAAGTGTCTGCGTCTCCTCCTTATGTGTGCTATTTAGGCTCTCC</canonical>
            <polymorphic>CCTTTCTTTTTTTGCAAAAAATGAGAGTAAGAAGGCCTACGGGACGACTCCCTGTGAATAGGACCGTCCACATTTTATTGTGGAGACCTTAGCATCCCGTTCCAATCCCGTTTACATTAGTAATGGCTCGTCTAAAGTCGAAACCGTAATACGCCTACATCAAACTCTTCTGATGACTTTTTCGAATCCAAATACTTCCTGTCCTTTCTCGGAAAGAAAGCGAAAAAGAGAGATGAAAGGAACATAGAGCAAAAAATGGGGAGCCGCCCTGGCGCCAGAGAGGAGGGTACTGCGAAGCAGTTGCAAAAGGGAGTCGCGGCCACTCCGGGCGGCACGACGGAGAGGATGATGGTCTTCTTCATACATGCACACATATTCCGTTTTTCGTTTTCTGAAGGCGCCAGGCGCCTTGTTCCGTGTGGCGGCCGCAAGCATTTTTTGCACTCCCTGGGAGTGGAGGACCCCCGAGAGATTCTTTTTCGTTTTTCTCTGTTTCTAGWCTCCCCTTATTGAAGAGCCTTCACGACGTCTTAATGGGCGGGACTATTGATGACGTGAGTCTTTGCGAGACTACCGTAGCCCATCTGGTGTCCAACTCGACGCTTTTATAACGTATTCTGGTGCAGTTGGAGGCCTCCCGTCCAAGTGTTTTATTAAACGGATATTGCTTCTACATACGGCAATTGACATGACCTATTGAGACTCTTCAGACAATTATTGATCCTCCATCTGTAATTTAAAAAAAGTTTTAATCTTTTTTCTTTCCAGTCAGATATGTGACAATTTAGACACTGTTTCTACTTTCAACCTCACATCAGGTAGCCAGGTGCTTTTGATTAAGATTCAAAAAGTATTCGCATTGTACTGAGGTTGCTAGAGAGACCCATAGTACCGAAATATATTTTTCCCATACCTATTATGCTTGTCTGAGAAAAAAAAGATTGAGACGCAGAGAAAAAGTGTCTGCGTCTCCTCCTTATGTGTGCTATTTAGGCTCTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>160 159 144 140 138 127 58 46 28</canonical_bands>
                <polymorphic_bands>160 159 144 140 138 127 86 46</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>496 478 26</canonical_bands>
                <polymorphic_bands>522 478</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATATTCCGTTTTTCGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TACGTTATAAAAGCGTCGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACATATTCCGTTTTTCGTTTTCTGAAGGCGCCAGGCGCCTTGTTCCGTGTGGCGGCCGCAAGCATTTTTTGCACTCCCTGGGAGTGGAGGACCCCCGAGAGATTCTTTTTCGTTTTTCTCTGTTTCTAGACTCCCCTTATTGAAGAGCCTTCACGACGTCTTAATGGGCGGGACTATTGATGACGTGAGTCTTTGCGAGACTACCGTAGCCCATCTGGTGTCCAACTCGACGCTTTTATAACGTA</canonical_amplicon>
		<polymorphic_amplicon>ACATATTCCGTTTTTCGTTTTCTGAAGGCGCCAGGCGCCTTGTTCCGTGTGGCGGCCGCAAGCATTTTTTGCACTCCCTGGGAGTGGAGGACCCCCGAGAGATTCTTTTTCGTTTTTCTCTGTTTCTAGWCTCCCCTTATTGAAGAGCCTTCACGACGTCTTAATGGGCGGGACTATTGATGACGTGAGTCTTTGCGAGACTACCGTAGCCCATCTGGTGTCCAACTCGACGCTTTTATAACGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17866</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>185271</contig_pos>
        <strand>+</strand>
        <context>CAGGCGGCAA[A/G]TTCTTGTTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGTGAGGAACACGAGAAGGACTGTCTCGTGTAAAGAAAACAGGCGGCAA</left_flank>
        <right_flank>TTCTTGTTGGCAGATGAAGACACACGGCGACGTGAAGCAATTCGCCCGTC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTCTGCAGCATCTGAAGCATCGTTGTCGTATGGTGTTGGAGATCTCCCACGAGTTGCCATGGACACCGCAACAGATTTCGCTCGTGGAACACGGCCATGGTTGCAACAACACCCGTCTTCCAGTTGATGTGGAGCATTTCGAGATGGATACGATGAGCGGTTGAGTTTCGAGCTGCTTCTTGCTGAAAATTACGTATTTTATGAAAAATCAGTTGGATAAGTTCAGTGAAGTTTCGTCTTGATAGTGAGTGGGAAAAGAGGAAGTGATTGAAAAAAATACACCGTTTTTTGATTGATCAACTGAATCACAACAAACTATTTGAAAAACAATTCTAGAACGTGGTAAAGGCTAACACTATGTTCAGTAGTCTAACGAATCATGCAAACTGAAGAAGTTTGGTGGAAGAAAAAAAGACATGCACATACGAGCAGAGTGATTGACCACACCGTGAGGAACACGAGAAGGACTGTCTCGTGTAAAGAAAACAGGCGGCAAGTTCTTGTTGGCAGATGAAGACACACGGCGACGTGAAGCAATTCGCCCGTCCGACCATCTTCCTTCCCCGTTTCGATAAATGGTTTGAGCGTAGGTGACGGGTACTCCGCCTTGTACTCCTCCATTGATTGCCATGGAACTGACTCCAGCACTCCACACTCCAGAGTCTTGTGAGAATCCGGATCCTCTTGCTGGAGATCCTCTGTTTCCAATTGTTTCCCAGTAGGATGATGAATGCCGCAACAAATCGTTTCGGGAGATTTCTGAAAGCCACAATGGAATAAGAAAAGGTTGATTTGAAACTGACTCTGAGCATTGGCCCCTTCACTTCTTCGAGTTTGTTGACCAGCACTGCTTCTACATGAAGATTGCCTTGAAAATGGTGAGCTTTGAGCACCAGAAGACGTGCTCATGTTCGAATTTCGATATGGTGATCCTCGACAAGGTGGGCACTGACCATCCTCATCTGATGACATTTCCTCATAAGCTTCGTTAGGATAG</canonical>
            <polymorphic>ATTCTCTGCAGCATCTGAAGCATCGTTGTCGTATGGTGTTGGAGATCTCCCACGAGTTGCCATGGACACCGCAACAGATTTCGCTCGTGGAACACGGCCATGGTTGCAACAACACCCGTCTTCCAGTTGATGTGGAGCATTTCGAGATGGATACGATGAGCGGTTGAGTTTCGAGCTGCTTCTTGCTGAAAATTACGTATTTTATGAAAAATCAGTTGGATAAGTTCAGTGAAGTTTCGTCTTGATAGTGAGTGGGAAAAGAGGAAGTGATTGAAAAAAATACACCGTTTTTTGATTGATCAACTGAATCACAACAAACTATTTGAAAAACAATTCTAGAACGTGGTAAAGGCTAACACTATGTTCAGTAGTCTAACGAATCATGCAAACTGAAGAAGTTTGGTGGAAGAAAAAAAGACATGCACATACGAGCAGAGTGATTGACCACACCGTGAGGAACACGAGAAGGACTGTCTCGTGTAAAGAAAACAGGCGGCAARTTCTTGTTGGCAGATGAAGACACACGGCGACGTGAAGCAATTCGCCCGTCCGACCATCTTCCTTCCCCGTTTCGATAAATGGTTTGAGCGTAGGTGACGGGTACTCCGCCTTGTACTCCTCCATTGATTGCCATGGAACTGACTCCAGCACTCCACACTCCAGAGTCTTGTGAGAATCCGGATCCTCTTGCTGGAGATCCTCTGTTTCCAATTGTTTCCCAGTAGGATGATGAATGCCGCAACAAATCGTTTCGGGAGATTTCTGAAAGCCACAATGGAATAAGAAAAGGTTGATTTGAAACTGACTCTGAGCATTGGCCCCTTCACTTCTTCGAGTTTGTTGACCAGCACTGCTTCTACATGAAGATTGCCTTGAAAATGGTGAGCTTTGAGCACCAGAAGACGTGCTCATGTTCGAATTTCGATATGGTGATCCTCGACAAGGTGGGCACTGACCATCCTCATCTGATGACATTTCCTCATAAGCTTCGTTAGGATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCATGCAAACTGAAGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>CAATCAATGGAGGAGTACAAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AATCATGCAAACTGAAGAAGTTTGGTGGAAGAAAAAAAGACATGCACATACGAGCAGAGTGATTGACCACACCGTGAGGAACACGAGAAGGACTGTCTCGTGTAAAGAAAACAGGCGGCAAGTTCTTGTTGGCAGATGAAGACACACGGCGACGTGAAGCAATTCGCCCGTCCGACCATCTTCCTTCCCCGTTTCGATAAATGGTTTGAGCGTAGGTGACGGGTACTCCGCCTTGTACTCCTCCATTGATTG</canonical_amplicon>
		<polymorphic_amplicon>AATCATGCAAACTGAAGAAGTTTGGTGGAAGAAAAAAAGACATGCACATACGAGCAGAGTGATTGACCACACCGTGAGGAACACGAGAAGGACTGTCTCGTGTAAAGAAAACAGGCGGCAARTTCTTGTTGGCAGATGAAGACACACGGCGACGTGAAGCAATTCGCCCGTCCGACCATCTTCCTTCCCCGTTTCGATAAATGGTTTGAGCGTAGGTGACGGGTACTCCGCCTTGTACTCCTCCATTGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17867</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>190539</contig_pos>
        <strand>+</strand>
        <context>ACTGAAAATG[A/T]AACGAATAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAACTATAGATTTACAGTTTTCCTAATTTTGGATAAGCAAACTGAAAATG</left_flank>
        <right_flank>AACGAATAAAATAAATTTCGAAGAATCGACACTGTCTATATATTTTTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAACGAGGACTCCGATAGTTTAAATTTTTTTTCACAGATTCATTATTTTTTGGATTTTTCAAAATAAACATCTGGCATATATTCTACTTTTCTTATCATAATAGAACTGGTCTCTAACACGATGAACAGTTCACTAGCCTATCTATTTGTAATACGCTAAACGACTGAATTGAAGGAAACGACCTCAAAAAACTTCCACGTGGCTGGAGCGACGTCGGATTGCCCCTCTGCCTATGCCTTCCTTCCGTTTCTTTAAGATAGAGAGAATAAAAGAAAAAGTGAAGAGACTCAGAGAAAATGCACGAAGCATCCAAAAACATACCTGATGTTGGTGTGACCAAGTCGAGAGTGGTTAATATTGTGGTAGATGTCATATCTGAAATTACAGACTTCTTGATATACGGAATACATTTTCAATTAAAAATGATTTAAGGAGACTCCAGCAATAAAACTATAGATTTACAGTTTTCCTAATTTTGGATAAGCAAACTGAAAATGAAACGAATAAAATAAATTTCGAAGAATCGACACTGTCTATATATTTTTTCAATCGACGTTGTAGTCACCAACCACTGCCGCAGCGGACAGGAAATCGAGGACAAATCAATTCAAAAGAGAAGGGGAGAAACATGATGACGTGGTTTAGTGAAAGAAGACTTGGGCGGTAGATGCGATGAGGAACATTAGAACAGAGGGAGAAAAGAGTTGCGAGATTTCTCGAATTATGTTTTAATGGTCTGTCGTTATTTTGTTTTTTCTGCTTTCAGAAAGTTTAAAAAAGAACATTTTGGTGCGCCTTACGTCCTTGGAACCGACTTGTGTATTCTTGGCAGAGCTTTGAAGCGCGTGCCGTTGCCATGCTACGCGCCGCGCCACCAACCTCCCAACAAAAAGAGCTCTTTTGGCATAAATATCTCTTTTGAGAAAGCTTTGAGAGAGCTCAAAACCCTTTCAAAAAAGAGGAAATCCATAGGAGGAAAGCGAAGAAAAGAAGAGGAG</canonical>
            <polymorphic>GAAACGAGGACTCCGATAGTTTAAATTTTTTTTCACAGATTCATTATTTTTTGGATTTTTCAAAATAAACATCTGGCATATATTCTACTTTTCTTATCATAATAGAACTGGTCTCTAACACGATGAACAGTTCACTAGCCTATCTATTTGTAATACGCTAAACGACTGAATTGAAGGAAACGACCTCAAAAAACTTCCACGTGGCTGGAGCGACGTCGGATTGCCCCTCTGCCTATGCCTTCCTTCCGTTTCTTTAAGATAGAGAGAATAAAAGAAAAAGTGAAGAGACTCAGAGAAAATGCACGAAGCATCCAAAAACATACCTGATGTTGGTGTGACCAAGTCGAGAGTGGTTAATATTGTGGTAGATGTCATATCTGAAATTACAGACTTCTTGATATACGGAATACATTTTCAATTAAAAATGATTTAAGGAGACTCCAGCAATAAAACTATAGATTTACAGTTTTCCTAATTTTGGATAAGCAAACTGAAAATGWAACGAATAAAATAAATTTCGAAGAATCGACACTGTCTATATATTTTTTCAATCGACGTTGTAGTCACCAACCACTGCCGCAGCGGACAGGAAATCGAGGACAAATCAATTCAAAAGAGAAGGGGAGAAACATGATGACGTGGTTTAGTGAAAGAAGACTTGGGCGGTAGATGCGATGAGGAACATTAGAACAGAGGGAGAAAAGAGTTGCGAGATTTCTCGAATTATGTTTTAATGGTCTGTCGTTATTTTGTTTTTTCTGCTTTCAGAAAGTTTAAAAAAGAACATTTTGGTGCGCCTTACGTCCTTGGAACCGACTTGTGTATTCTTGGCAGAGCTTTGAAGCGCGTGCCGTTGCCATGCTACGCGCCGCGCCACCAACCTCCCAACAAAAAGAGCTCTTTTGGCATAAATATCTCTTTTGAGAAAGCTTTGAGAGAGCTCAAAACCCTTTCAAAAAAGAGGAAATCCATAGGAGGAAAGCGAAGAAAAGAAGAGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAATTAAAAATGATTTAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>CAAGTCTTCTTTCACTAAACCAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTCAATTAAAAATGATTTAAGGAGACTCCAGCAATAAAACTATAGATTTACAGTTTTCCTAATTTTGGATAAGCAAACTGAAAATGAAACGAATAAAATAAATTTCGAAGAATCGACACTGTCTATATATTTTTTCAATCGACGTTGTAGTCACCAACCACTGCCGCAGCGGACAGGAAATCGAGGACAAATCAATTCAAAAGAGAAGGGGAGAAACATGATGACGTGGTTTAGTGAAAGAAGACTTG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAATTAAAAATGATTTAAGGAGACTCCAGCAATAAAACTATAGATTTACAGTTTTCCTAATTTTGGATAAGCAAACTGAAAATGWAACGAATAAAATAAATTTCGAAGAATCGACACTGTCTATATATTTTTTCAATCGACGTTGTAGTCACCAACCACTGCCGCAGCGGACAGGAAATCGAGGACAAATCAATTCAAAAGAGAAGGGGAGAAACATGATGACGTGGTTTAGTGAAAGAAGACTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17868</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>190619</contig_pos>
        <strand>+</strand>
        <context>ACCACTGCCG[C/T]AGCGGACAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACTGTCTATATATTTTTTCAATCGACGTTGTAGTCACCAACCACTGCCG</left_flank>
        <right_flank>AGCGGACAGGAAATCGAGGACAAATCAATTCAAAAGAGAAGGGGAGAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTCTACTTTTCTTATCATAATAGAACTGGTCTCTAACACGATGAACAGTTCACTAGCCTATCTATTTGTAATACGCTAAACGACTGAATTGAAGGAAACGACCTCAAAAAACTTCCACGTGGCTGGAGCGACGTCGGATTGCCCCTCTGCCTATGCCTTCCTTCCGTTTCTTTAAGATAGAGAGAATAAAAGAAAAAGTGAAGAGACTCAGAGAAAATGCACGAAGCATCCAAAAACATACCTGATGTTGGTGTGACCAAGTCGAGAGTGGTTAATATTGTGGTAGATGTCATATCTGAAATTACAGACTTCTTGATATACGGAATACATTTTCAATTAAAAATGATTTAAGGAGACTCCAGCAATAAAACTATAGATTTACAGTTTTCCTAATTTTGGATAAGCAAACTGAAAATGAAACGAATAAAATAAATTTCGAAGAATCGACACTGTCTATATATTTTTTCAATCGACGTTGTAGTCACCAACCACTGCCGCAGCGGACAGGAAATCGAGGACAAATCAATTCAAAAGAGAAGGGGAGAAACATGATGACGTGGTTTAGTGAAAGAAGACTTGGGCGGTAGATGCGATGAGGAACATTAGAACAGAGGGAGAAAAGAGTTGCGAGATTTCTCGAATTATGTTTTAATGGTCTGTCGTTATTTTGTTTTTTCTGCTTTCAGAAAGTTTAAAAAAGAACATTTTGGTGCGCCTTACGTCCTTGGAACCGACTTGTGTATTCTTGGCAGAGCTTTGAAGCGCGTGCCGTTGCCATGCTACGCGCCGCGCCACCAACCTCCCAACAAAAAGAGCTCTTTTGGCATAAATATCTCTTTTGAGAAAGCTTTGAGAGAGCTCAAAACCCTTTCAAAAAAGAGGAAATCCATAGGAGGAAAGCGAAGAAAAGAAGAGGAGAGATCATAATTGCAGTGGTTTTGGCTAAGAAAAAATAGATAATAAAGAAATGTAGGTTGAATAGAAAAACTGAAAAACAA</canonical>
            <polymorphic>TATTCTACTTTTCTTATCATAATAGAACTGGTCTCTAACACGATGAACAGTTCACTAGCCTATCTATTTGTAATACGCTAAACGACTGAATTGAAGGAAACGACCTCAAAAAACTTCCACGTGGCTGGAGCGACGTCGGATTGCCCCTCTGCCTATGCCTTCCTTCCGTTTCTTTAAGATAGAGAGAATAAAAGAAAAAGTGAAGAGACTCAGAGAAAATGCACGAAGCATCCAAAAACATACCTGATGTTGGTGTGACCAAGTCGAGAGTGGTTAATATTGTGGTAGATGTCATATCTGAAATTACAGACTTCTTGATATACGGAATACATTTTCAATTAAAAATGATTTAAGGAGACTCCAGCAATAAAACTATAGATTTACAGTTTTCCTAATTTTGGATAAGCAAACTGAAAATGAAACGAATAAAATAAATTTCGAAGAATCGACACTGTCTATATATTTTTTCAATCGACGTTGTAGTCACCAACCACTGCCGYAGCGGACAGGAAATCGAGGACAAATCAATTCAAAAGAGAAGGGGAGAAACATGATGACGTGGTTTAGTGAAAGAAGACTTGGGCGGTAGATGCGATGAGGAACATTAGAACAGAGGGAGAAAAGAGTTGCGAGATTTCTCGAATTATGTTTTAATGGTCTGTCGTTATTTTGTTTTTTCTGCTTTCAGAAAGTTTAAAAAAGAACATTTTGGTGCGCCTTACGTCCTTGGAACCGACTTGTGTATTCTTGGCAGAGCTTTGAAGCGCGTGCCGTTGCCATGCTACGCGCCGCGCCACCAACCTCCCAACAAAAAGAGCTCTTTTGGCATAAATATCTCTTTTGAGAAAGCTTTGAGAGAGCTCAAAACCCTTTCAAAAAAGAGGAAATCCATAGGAGGAAAGCGAAGAAAAGAAGAGGAGAGATCATAATTGCAGTGGTTTTGGCTAAGAAAAAATAGATAATAAAGAAATGTAGGTTGAATAGAAAAACTGAAAAACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>497 211 207 85</canonical_bands>
                <polymorphic_bands>582 211 207</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>499 292 209</canonical_bands>
                <polymorphic_bands>791 209</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>499 292 209</canonical_bands>
                <polymorphic_bands>791 209</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAATAAAATAAATTTCGAAGAA</pcr_primer_p1>
		<pcr_primer_p2>AAAATAACGACAGACCATTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGAATAAAATAAATTTCGAAGAATCGACACTGTCTATATATTTTTTCAATCGACGTTGTAGTCACCAACCACTGCCGCAGCGGACAGGAAATCGAGGACAAATCAATTCAAAAGAGAAGGGGAGAAACATGATGACGTGGTTTAGTGAAAGAAGACTTGGGCGGTAGATGCGATGAGGAACATTAGAACAGAGGGAGAAAAGAGTTGCGAGATTTCTCGAATTATGTTTTAATGGTCTGTCGTTATTTT</canonical_amplicon>
		<polymorphic_amplicon>CGAATAAAATAAATTTCGAAGAATCGACACTGTCTATATATTTTTTCAATCGACGTTGTAGTCACCAACCACTGCCGYAGCGGACAGGAAATCGAGGACAAATCAATTCAAAAGAGAAGGGGAGAAACATGATGACGTGGTTTAGTGAAAGAAGACTTGGGCGGTAGATGCGATGAGGAACATTAGAACAGAGGGAGAAAAGAGTTGCGAGATTTCTCGAATTATGTTTTAATGGTCTGTCGTTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17869</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>191422</contig_pos>
        <strand>+</strand>
        <context>TAGGAGTAAT[C/T]ATAGTTTCCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTGGAATGAGAAAAAATTGATACTACTGTCTTTCAATATTAGGAGTAAT</left_flank>
        <right_flank>ATAGTTTCCGGAAAAAAAGAGTCTACGTCATGATATAAAAATAGAAAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCAACAAAAAGAGCTCTTTTGGCATAAATATCTCTTTTGAGAAAGCTTTGAGAGAGCTCAAAACCCTTTCAAAAAAGAGGAAATCCATAGGAGGAAAGCGAAGAAAAGAAGAGGAGAGATCATAATTGCAGTGGTTTTGGCTAAGAAAAAATAGATAATAAAGAAATGTAGGTTGAATAGAAAAACTGAAAAACAACATTATATAAAAATACTGTATTTCCTTTAATAGAAGCACTCAAACCTTCGATTTTGAGCTCAATTATCTCGATTCCTATGAAAAGTATCAAAAATGCGTCATTTGGAAAAATGTTGATTATAATCTGAAAAACGGCTTATCAGTTGAGAAACTTTTGATATCTCTCACAGAAATAATGATAATTGAACTTCAAGTTGACGGATTGAGTGGTCTTCTGTTAGAGGAAATACGGTATATAGTTTGTCCATTAATTGTGGAATGAGAAAAAATTGATACTACTGTCTTTCAATATTAGGAGTAATCATAGTTTCCGGAAAAAAAGAGTCTACGTCATGATATAAAAATAGAAAACTACTCTAAATTATTGAGGTTGAAGTATTTTCAGAAACCCAAGGAATGACAGCGATGGTCATTTATGAATAATGGAGCAGGAATACATAACTGCTTTGAAAATATAATTTTTTAAATTGATAACTTAAGACATTTCCAGAAATGAGAAACTGTGTGGTTTGTTAAAAAGTTAGTTGTTGGACCAAACTGATTCCGTGCTTCAGTTTCCAACGTGAGTCGATCACCTGATTGTTGGTCGGAGAAAAACCTACGCGAACCGAAGAAGAAAAAAAAAGATATGAAGAGGAAGATGAAAAAGAAAGAGAAGAACACACGCATCGGTCCGTGTGAGTATGTGTGTATGAGGGTGGTGAGTTTGAGTGCCTATGTGTGTCTGTGTGTATGTCTCTGTTTGAATTACTCATCCATTCAATATGTGATTTTCTATGGGGCAGGTAATATATTTTTTTTAA</canonical>
            <polymorphic>CCCAACAAAAAGAGCTCTTTTGGCATAAATATCTCTTTTGAGAAAGCTTTGAGAGAGCTCAAAACCCTTTCAAAAAAGAGGAAATCCATAGGAGGAAAGCGAAGAAAAGAAGAGGAGAGATCATAATTGCAGTGGTTTTGGCTAAGAAAAAATAGATAATAAAGAAATGTAGGTTGAATAGAAAAACTGAAAAACAACATTATATAAAAATACTGTATTTCCTTTAATAGAAGCACTCAAACCTTCGATTTTGAGCTCAATTATCTCGATTCCTATGAAAAGTATCAAAAATGCGTCATTTGGAAAAATGTTGATTATAATCTGAAAAACGGCTTATCAGTTGAGAAACTTTTGATATCTCTCACAGAAATAATGATAATTGAACTTCAAGTTGACGGATTGAGTGGTCTTCTGTTAGAGGAAATACGGTATATAGTTTGTCCATTAATTGTGGAATGAGAAAAAATTGATACTACTGTCTTTCAATATTAGGAGTAATYATAGTTTCCGGAAAAAAAGAGTCTACGTCATGATATAAAAATAGAAAACTACTCTAAATTATTGAGGTTGAAGTATTTTCAGAAACCCAAGGAATGACAGCGATGGTCATTTATGAATAATGGAGCAGGAATACATAACTGCTTTGAAAATATAATTTTTTAAATTGATAACTTAAGACATTTCCAGAAATGAGAAACTGTGTGGTTTGTTAAAAAGTTAGTTGTTGGACCAAACTGATTCCGTGCTTCAGTTTCCAACGTGAGTCGATCACCTGATTGTTGGTCGGAGAAAAACCTACGCGAACCGAAGAAGAAAAAAAAAGATATGAAGAGGAAGATGAAAAAGAAAGAGAAGAACACACGCATCGGTCCGTGTGAGTATGTGTGTATGAGGGTGGTGAGTTTGAGTGCCTATGTGTGTCTGTGTGTATGTCTCTGTTTGAATTACTCATCCATTCAATATGTGATTTTCTATGGGGCAGGTAATATATTTTTTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTAATTGTGGAATGAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCTGGAAATGTCTTAAGTTATCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CATTAATTGTGGAATGAGAAAAAATTGATACTACTGTCTTTCAATATTAGGAGTAATCATAGTTTCCGGAAAAAAAGAGTCTACGTCATGATATAAAAATAGAAAACTACTCTAAATTATTGAGGTTGAAGTATTTTCAGAAACCCAAGGAATGACAGCGATGGTCATTTATGAATAATGGAGCAGGAATACATAACTGCTTTGAAAATATAATTTTTTAAATTGATAACTTAAGACATTTCCAGAA</canonical_amplicon>
		<polymorphic_amplicon>CATTAATTGTGGAATGAGAAAAAATTGATACTACTGTCTTTCAATATTAGGAGTAATYATAGTTTCCGGAAAAAAAGAGTCTACGTCATGATATAAAAATAGAAAACTACTCTAAATTATTGAGGTTGAAGTATTTTCAGAAACCCAAGGAATGACAGCGATGGTCATTTATGAATAATGGAGCAGGAATACATAACTGCTTTGAAAATATAATTTTTTAAATTGATAACTTAAGACATTTCCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17959</snp_id>
        <super_contig>c010801095.Contig3</super_contig>
        <contig_pos>4977</contig_pos>
        <strand>+</strand>
        <context>AAAGTTCACT[A/G]CTAGTAGATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCTGCGCCTCTTGATCTCTAGTCAGATCCCTTTAGTCTCAAAGTTCACT</left_flank>
        <right_flank>CTAGTAGATCTCAAGACTTTCTTTCTAGTTTGAGTTGTTTTTTGCTGTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACACCAAAAAATCAATTCACACTTTTCTTTTCATTTCGTTTTTTGAACTATTTCCCTCATTTTGTGAATTGACCACCACACATTCAATTTGCATATGTCCTTTTCTTCCTCTTCTTCTCTTATTTTATTTTCTTCTTATTCTTCCTTCCTTCTTCAGAAGACATCAATCACTTCTTCTTGGGTGTGGTATACACCATACCGTATCTTTTATCCCAATCTCTTCTCAATCTCTTCTTCTTCTTTTTACCCCCAACTCTACGCTCTTCTCATTAATCTCTTTGCCACGTCACGTTATCTGGAGAAGAAGAAGGAGAAGAAGAAGTGTCAGCTGTTAGACTCCACGTAGCAATAGTCACCCAGGACAACACCTCGCCGAGACAACCAAACTTTCGAGTTTCCTTCTTCTTCCTCTTCTTCTTCGCTCATCCCGACGTCAATTGTCATTTTTCTCTGCGCCTCTTGATCTCTAGTCAGATCCCTTTAGTCTCAAAGTTCACTACTAGTAGATCTCAAGACTTTCTTTCTAGTTTGAGTTGTTTTTTGCTGTTGAGTTCAGAATTTTTACCTAGTCTCTGGATTTTCTTAATCAAAAGTTTTGAAGAGCTGGATTTTGAGGGTCTTCCATTTCCTCGAAAATCGAAACATCTGAAAATCTGAGACAGTTAGAATTCTGGAACTTTAAAAGTTTCCAACATTGAAGATTCAGCTTCTTTTTAAATTCAAAGTCTTGAGAAATTCTGAAATGTAGCTTTTCTAAAATTTTTGGAATTTCGCTAAAAACTATCCTTTTTGATTTTAGGCGTGTTAGATGTAAAATTTTACGCTGATTCGAATGGTACCATAATCAGAGCTCTATCAGGAACCGAGTTATGATCATTCTAACTGCGTAACTAGCACAAAAACTGGTCATAACTCTGTCCATTTTGCCGCTAGGGTCTCGATTTTTGTACCATTCGAAGCAGCATAAAATTTTCTTTTTAAAATCTTAAGTTCTAAAAA</canonical>
            <polymorphic>GACACCAAAAAATCAATTCACACTTTTCTTTTCATTTCGTTTTTTGAACTATTTCCCTCATTTTGTGAATTGACCACCACACATTCAATTTGCATATGTCCTTTTCTTCCTCTTCTTCTCTTATTTTATTTTCTTCTTATTCTTCCTTCCTTCTTCAGAAGACATCAATCACTTCTTCTTGGGTGTGGTATACACCATACCGTATCTTTTATCCCAATCTCTTCTCAATCTCTTCTTCTTCTTTTTACCCCCAACTCTACGCTCTTCTCATTAATCTCTTTGCCACGTCACGTTATCTGGAGAAGAAGAAGGAGAAGAAGAAGTGTCAGCTGTTAGACTCCACGTAGCAATAGTCACCCAGGACAACACCTCGCCGAGACAACCAAACTTTCGAGTTTCCTTCTTCTTCCTCTTCTTCTTCGCTCATCCCGACGTCAATTGTCATTTTTCTCTGCGCCTCTTGATCTCTAGTCAGATCCCTTTAGTCTCAAAGTTCACTRCTAGTAGATCTCAAGACTTTCTTTCTAGTTTGAGTTGTTTTTTGCTGTTGAGTTCAGAATTTTTACCTAGTCTCTGGATTTTCTTAATCAAAAGTTTTGAAGAGCTGGATTTTGAGGGTCTTCCATTTCCTCGAAAATCGAAACATCTGAAAATCTGAGACAGTTAGAATTCTGGAACTTTAAAAGTTTCCAACATTGAAGATTCAGCTTCTTTTTAAATTCAAAGTCTTGAGAAATTCTGAAATGTAGCTTTTCTAAAATTTTTGGAATTTCGCTAAAAACTATCCTTTTTGATTTTAGGCGTGTTAGATGTAAAATTTTACGCTGATTCGAATGGTACCATAATCAGAGCTCTATCAGGAACCGAGTTATGATCATTCTAACTGCGTAACTAGCACAAAAACTGGTCATAACTCTGTCCATTTTGCCGCTAGGGTCTCGATTTTTGTACCATTCGAAGCAGCATAAAATTTTCTTTTTAAAATCTTAAGTTCTAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACTAGT</site>
                <isoschizomers>
                    <enzyme>AhlI</enzyme>
                    <enzyme>BcuI</enzyme>
                    <enzyme>SpeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGACTCCACGTAGCAATAGTC</pcr_primer_p1>
		<pcr_primer_p2>GAAAATCCAGAGACTAGGTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTAGACTCCACGTAGCAATAGTCACCCAGGACAACACCTCGCCGAGACAACCAAACTTTCGAGTTTCCTTCTTCTTCCTCTTCTTCTTCGCTCATCCCGACGTCAATTGTCATTTTTCTCTGCGCCTCTTGATCTCTAGTCAGATCCCTTTAGTCTCAAAGTTCACTACTAGTAGATCTCAAGACTTTCTTTCTAGTTTGAGTTGTTTTTTGCTGTTGAGTTCAGAATTTTTACCTAGTCTCTGGATTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTAGACTCCACGTAGCAATAGTCACCCAGGACAACACCTCGCCGAGACAACCAAACTTTCGAGTTTCCTTCTTCTTCCTCTTCTTCTTCGCTCATCCCGACGTCAATTGTCATTTTTCTCTGCGCCTCTTGATCTCTAGTCAGATCCCTTTAGTCTCAAAGTTCACTRCTAGTAGATCTCAAGACTTTCTTTCTAGTTTGAGTTGTTTTTTGCTGTTGAGTTCAGAATTTTTACCTAGTCTCTGGATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17960</snp_id>
        <super_contig>c010801095.Contig3</super_contig>
        <contig_pos>5080</contig_pos>
        <strand>+</strand>
        <context>AGTTTTGAAG[A/C]GCTGGATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCAGAATTTTTACCTAGTCTCTGGATTTTCTTAATCAAAAGTTTTGAAG</left_flank>
        <right_flank>GCTGGATTTTGAGGGTCTTCCATTTCCTCGAAAATCGAAACATCTGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTCCTCTTCTTCTCTTATTTTATTTTCTTCTTATTCTTCCTTCCTTCTTCAGAAGACATCAATCACTTCTTCTTGGGTGTGGTATACACCATACCGTATCTTTTATCCCAATCTCTTCTCAATCTCTTCTTCTTCTTTTTACCCCCAACTCTACGCTCTTCTCATTAATCTCTTTGCCACGTCACGTTATCTGGAGAAGAAGAAGGAGAAGAAGAAGTGTCAGCTGTTAGACTCCACGTAGCAATAGTCACCCAGGACAACACCTCGCCGAGACAACCAAACTTTCGAGTTTCCTTCTTCTTCCTCTTCTTCTTCGCTCATCCCGACGTCAATTGTCATTTTTCTCTGCGCCTCTTGATCTCTAGTCAGATCCCTTTAGTCTCAAAGTTCACTACTAGTAGATCTCAAGACTTTCTTTCTAGTTTGAGTTGTTTTTTGCTGTTGAGTTCAGAATTTTTACCTAGTCTCTGGATTTTCTTAATCAAAAGTTTTGAAGAGCTGGATTTTGAGGGTCTTCCATTTCCTCGAAAATCGAAACATCTGAAAATCTGAGACAGTTAGAATTCTGGAACTTTAAAAGTTTCCAACATTGAAGATTCAGCTTCTTTTTAAATTCAAAGTCTTGAGAAATTCTGAAATGTAGCTTTTCTAAAATTTTTGGAATTTCGCTAAAAACTATCCTTTTTGATTTTAGGCGTGTTAGATGTAAAATTTTACGCTGATTCGAATGGTACCATAATCAGAGCTCTATCAGGAACCGAGTTATGATCATTCTAACTGCGTAACTAGCACAAAAACTGGTCATAACTCTGTCCATTTTGCCGCTAGGGTCTCGATTTTTGTACCATTCGAAGCAGCATAAAATTTTCTTTTTAAAATCTTAAGTTCTAAAAATCTGCTAAAGTCGAAAATCTAGCTCTTCTAAAATTGAAAATTACAAAAAAATCTGTAAAAGACGGGCCTCTAACTTTGACCAAAAGGTTGAATTTTTGCAAAT</canonical>
            <polymorphic>TTCTTCCTCTTCTTCTCTTATTTTATTTTCTTCTTATTCTTCCTTCCTTCTTCAGAAGACATCAATCACTTCTTCTTGGGTGTGGTATACACCATACCGTATCTTTTATCCCAATCTCTTCTCAATCTCTTCTTCTTCTTTTTACCCCCAACTCTACGCTCTTCTCATTAATCTCTTTGCCACGTCACGTTATCTGGAGAAGAAGAAGGAGAAGAAGAAGTGTCAGCTGTTAGACTCCACGTAGCAATAGTCACCCAGGACAACACCTCGCCGAGACAACCAAACTTTCGAGTTTCCTTCTTCTTCCTCTTCTTCTTCGCTCATCCCGACGTCAATTGTCATTTTTCTCTGCGCCTCTTGATCTCTAGTCAGATCCCTTTAGTCTCAAAGTTCACTACTAGTAGATCTCAAGACTTTCTTTCTAGTTTGAGTTGTTTTTTGCTGTTGAGTTCAGAATTTTTACCTAGTCTCTGGATTTTCTTAATCAAAAGTTTTGAAGMGCTGGATTTTGAGGGTCTTCCATTTCCTCGAAAATCGAAACATCTGAAAATCTGAGACAGTTAGAATTCTGGAACTTTAAAAGTTTCCAACATTGAAGATTCAGCTTCTTTTTAAATTCAAAGTCTTGAGAAATTCTGAAATGTAGCTTTTCTAAAATTTTTGGAATTTCGCTAAAAACTATCCTTTTTGATTTTAGGCGTGTTAGATGTAAAATTTTACGCTGATTCGAATGGTACCATAATCAGAGCTCTATCAGGAACCGAGTTATGATCATTCTAACTGCGTAACTAGCACAAAAACTGGTCATAACTCTGTCCATTTTGCCGCTAGGGTCTCGATTTTTGTACCATTCGAAGCAGCATAAAATTTTCTTTTTAAAATCTTAAGTTCTAAAAATCTGCTAAAGTCGAAAATCTAGCTCTTCTAAAATTGAAAATTACAAAAAAATCTGTAAAAGACGGGCCTCTAACTTTGACCAAAAGGTTGAATTTTTGCAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>275 226 171 103 102 81 42</canonical_bands>
                <polymorphic_bands>378 226 171 102 81 42</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>275 226 171 103 102 44 42 37</canonical_bands>
                <polymorphic_bands>378 226 171 102 44 42 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCCTTTAGTCTCAAAGTTCAC</pcr_primer_p1>
		<pcr_primer_p2>TTTGAATTTAAAAAGAAGCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCCCTTTAGTCTCAAAGTTCACTACTAGTAGATCTCAAGACTTTCTTTCTAGTTTGAGTTGTTTTTTGCTGTTGAGTTCAGAATTTTTACCTAGTCTCTGGATTTTCTTAATCAAAAGTTTTGAAGAGCTGGATTTTGAGGGTCTTCCATTTCCTCGAAAATCGAAACATCTGAAAATCTGAGACAGTTAGAATTCTGGAACTTTAAAAGTTTCCAACATTGAAGATTCAGCTTCTTTTTAAATTCAAA</canonical_amplicon>
		<polymorphic_amplicon>ATCCCTTTAGTCTCAAAGTTCACTACTAGTAGATCTCAAGACTTTCTTTCTAGTTTGAGTTGTTTTTTGCTGTTGAGTTCAGAATTTTTACCTAGTCTCTGGATTTTCTTAATCAAAAGTTTTGAAGMGCTGGATTTTGAGGGTCTTCCATTTCCTCGAAAATCGAAACATCTGAAAATCTGAGACAGTTAGAATTCTGGAACTTTAAAAGTTTCCAACATTGAAGATTCAGCTTCTTTTTAAATTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17961</snp_id>
        <super_contig>c010801095.Contig3</super_contig>
        <contig_pos>5093</contig_pos>
        <strand>+</strand>
        <context>TGGATTTTGA[A/G]GGTCTTCCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTAGTCTCTGGATTTTCTTAATCAAAAGTTTTGAAGAGCTGGATTTTGA</left_flank>
        <right_flank>GGTCTTCCATTTCCTCGAAAATCGAAACATCTGAAAATCTGAGACAGTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCTTATTTTATTTTCTTCTTATTCTTCCTTCCTTCTTCAGAAGACATCAATCACTTCTTCTTGGGTGTGGTATACACCATACCGTATCTTTTATCCCAATCTCTTCTCAATCTCTTCTTCTTCTTTTTACCCCCAACTCTACGCTCTTCTCATTAATCTCTTTGCCACGTCACGTTATCTGGAGAAGAAGAAGGAGAAGAAGAAGTGTCAGCTGTTAGACTCCACGTAGCAATAGTCACCCAGGACAACACCTCGCCGAGACAACCAAACTTTCGAGTTTCCTTCTTCTTCCTCTTCTTCTTCGCTCATCCCGACGTCAATTGTCATTTTTCTCTGCGCCTCTTGATCTCTAGTCAGATCCCTTTAGTCTCAAAGTTCACTACTAGTAGATCTCAAGACTTTCTTTCTAGTTTGAGTTGTTTTTTGCTGTTGAGTTCAGAATTTTTACCTAGTCTCTGGATTTTCTTAATCAAAAGTTTTGAAGAGCTGGATTTTGAGGGTCTTCCATTTCCTCGAAAATCGAAACATCTGAAAATCTGAGACAGTTAGAATTCTGGAACTTTAAAAGTTTCCAACATTGAAGATTCAGCTTCTTTTTAAATTCAAAGTCTTGAGAAATTCTGAAATGTAGCTTTTCTAAAATTTTTGGAATTTCGCTAAAAACTATCCTTTTTGATTTTAGGCGTGTTAGATGTAAAATTTTACGCTGATTCGAATGGTACCATAATCAGAGCTCTATCAGGAACCGAGTTATGATCATTCTAACTGCGTAACTAGCACAAAAACTGGTCATAACTCTGTCCATTTTGCCGCTAGGGTCTCGATTTTTGTACCATTCGAAGCAGCATAAAATTTTCTTTTTAAAATCTTAAGTTCTAAAAATCTGCTAAAGTCGAAAATCTAGCTCTTCTAAAATTGAAAATTACAAAAAAATCTGTAAAAGACGGGCCTCTAACTTTGACCAAAAGGTTGAATTTTTGCAAATCTTTGAAATTCTG</canonical>
            <polymorphic>TCTCTTATTTTATTTTCTTCTTATTCTTCCTTCCTTCTTCAGAAGACATCAATCACTTCTTCTTGGGTGTGGTATACACCATACCGTATCTTTTATCCCAATCTCTTCTCAATCTCTTCTTCTTCTTTTTACCCCCAACTCTACGCTCTTCTCATTAATCTCTTTGCCACGTCACGTTATCTGGAGAAGAAGAAGGAGAAGAAGAAGTGTCAGCTGTTAGACTCCACGTAGCAATAGTCACCCAGGACAACACCTCGCCGAGACAACCAAACTTTCGAGTTTCCTTCTTCTTCCTCTTCTTCTTCGCTCATCCCGACGTCAATTGTCATTTTTCTCTGCGCCTCTTGATCTCTAGTCAGATCCCTTTAGTCTCAAAGTTCACTACTAGTAGATCTCAAGACTTTCTTTCTAGTTTGAGTTGTTTTTTGCTGTTGAGTTCAGAATTTTTACCTAGTCTCTGGATTTTCTTAATCAAAAGTTTTGAAGAGCTGGATTTTGARGGTCTTCCATTTCCTCGAAAATCGAAACATCTGAAAATCTGAGACAGTTAGAATTCTGGAACTTTAAAAGTTTCCAACATTGAAGATTCAGCTTCTTTTTAAATTCAAAGTCTTGAGAAATTCTGAAATGTAGCTTTTCTAAAATTTTTGGAATTTCGCTAAAAACTATCCTTTTTGATTTTAGGCGTGTTAGATGTAAAATTTTACGCTGATTCGAATGGTACCATAATCAGAGCTCTATCAGGAACCGAGTTATGATCATTCTAACTGCGTAACTAGCACAAAAACTGGTCATAACTCTGTCCATTTTGCCGCTAGGGTCTCGATTTTTGTACCATTCGAAGCAGCATAAAATTTTCTTTTTAAAATCTTAAGTTCTAAAAATCTGCTAAAGTCGAAAATCTAGCTCTTCTAAAATTGAAAATTACAAAAAAATCTGTAAAAGACGGGCCTCTAACTTTGACCAAAAGGTTGAATTTTTGCAAATCTTTGAAATTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCCTTTAGTCTCAAAGTTCAC</pcr_primer_p1>
		<pcr_primer_p2>TTTGAATTTAAAAAGAAGCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCCCTTTAGTCTCAAAGTTCACTACTAGTAGATCTCAAGACTTTCTTTCTAGTTTGAGTTGTTTTTTGCTGTTGAGTTCAGAATTTTTACCTAGTCTCTGGATTTTCTTAATCAAAAGTTTTGAAGAGCTGGATTTTGAGGGTCTTCCATTTCCTCGAAAATCGAAACATCTGAAAATCTGAGACAGTTAGAATTCTGGAACTTTAAAAGTTTCCAACATTGAAGATTCAGCTTCTTTTTAAATTCAAA</canonical_amplicon>
		<polymorphic_amplicon>ATCCCTTTAGTCTCAAAGTTCACTACTAGTAGATCTCAAGACTTTCTTTCTAGTTTGAGTTGTTTTTTGCTGTTGAGTTCAGAATTTTTACCTAGTCTCTGGATTTTCTTAATCAAAAGTTTTGAAGAGCTGGATTTTGARGGTCTTCCATTTCCTCGAAAATCGAAACATCTGAAAATCTGAGACAGTTAGAATTCTGGAACTTTAAAAGTTTCCAACATTGAAGATTCAGCTTCTTTTTAAATTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17962</snp_id>
        <super_contig>c010801095.Contig3</super_contig>
        <contig_pos>15953</contig_pos>
        <strand>+</strand>
        <context>AACTAGCCGA[C/T]YGCCGATCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGAATTTTAAAGAAGTTCCCTTTTATGGCTTCCATCCGGAACTAGCCGA</left_flank>
        <right_flank>TGCCGATCTGGCCGACCGAATTTTCACAATCGCGCGTCAAAATGCTAGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTACAGTAATTCGGGATAATGATGGAGAAAACAGACTCCGAAGGGTGAAATCTGATGGGAAATTCAATTTTCCTACTCTCCACTCTTCTACAGTAACTCTAAACCTAGAAAATTTCAAATGTCGTAAGATTCAATGTTTTGGATGTATTTTGGAGTTTAATGTTTTGTTTTGTTTTTATGTATTTTAATAATGTTATGTTTTTTAATGTTTTAGAGTCAGGGTACAGATAGCAAAACAATTTATTAGATTGAAAGAAAGTTTAAAAACTGCATCCCATATTTTCGACCCAATTGAACGACTCGTTCGAGTTTCCGACATATTCTGCACCAATGATCCAGTTAGAATCGATCGCTCGAATTTCATCAAAAACGAAATTGTAATCCAGCTCACCACGGTTATCGCATGCTCCGCGAGCCGGAACCTGAGCTACTTGGATGTATCCTAAAAATGAATTTTAAAGAAGTTCCCTTTTATGGCTTCCATCCGGAACTAGCCGATTGCCGATCTGGCCGACCGAATTTTCACAATCGCGCGTCAAAATGCTAGAGCGTGTTTGCGTACGCAGCAGCTTATTTTACGACGCACGATGCTTCGTACGCAAACACTCTCTGGCATGGTGACGCGCAAATGCAAAATTTCGGTCGGCCGGCGGTCCCCGATTTTTGACCGACTGAAATTGAAACCTACCAATGTGCTCTTTCAATTTTCTCATCGTTGCTCCAATCTGACCGTTGATTTGTTGAGCATGAAATGTGTCCTGAACATTTTGAATTTTCTCAGATTTTTCAGAAACACCTTACATATTGAATTTTCAAATTCTTCGATTGATCTTTCTCGATCAATCTCACCGCCTCCTCATAATTATTCAAATAATATCCAGGGATTGTGTATTCATTGATTGGCTCAATTAGACAGATCAAGTCTGCTCTTTGAATTTTTCAGCAGCAAAAAGAACATTTTCAGAGTAGACTTCTGAAGCGTTCGCCACGTCATCAGCG</canonical>
            <polymorphic>GGTACAGTAATTCGGGATAATGATGGAGAAAACAGACTCCGAAGGGTGAAATCTGATGGGAAATTCAATTTTCCTACTCTCCACTCTTCTACAGTAACTCTAAACCTAGAAAATTTCAAATGTCGTAAGATTCAATGTTTTGGATGTATTTTGGAGTTTAATGTTTTGTTTTGTTTTTATGTATTTTAATAATGTTATGTTTTTTAATGTTTTAGAGTCAGGGTACAGATAGCAAAACAATTTATTAGATTGAAAGAAAGTTTAAAAACTGCATCCCATATTTTCGACCCAATTGAACGACTCGTTCGAGTTTCCGACATATTCTGCACCAATGATCCAGTTAGAATCGATCGCTCGAATTTCATCAAAAACGAAATTGTAATCCAGCTCACCACGGTTATCGCATGCTCCGCGAGCCGGAACCTGAGCTACTTGGATGTATCCTAAAAATGAATTTTAAAGAAGTTCCCTTTTATGGCTTCCATCCGGAACTAGCCGAYTGCCGATCTGGCCGACCGAATTTTCACAATCGCGCGTCAAAATGCTAGAGCGTGTTTGCGTACGCAGCAGCTTATTTTACGACGCACGATGCTTCGTACGCAAACACTCTCTGGCATGGTGACGCGCAAATGCAAAATTTCGGTCGGCCGGCGGTCCCCGATTTTTGACCGACTGAAATTGAAACCTACCAATGTGCTCTTTCAATTTTCTCATCGTTGCTCCAATCTGACCGTTGATTTGTTGAGCATGAAATGTGTCCTGAACATTTTGAATTTTCTCAGATTTTTCAGAAACACCTTACATATTGAATTTTCAAATTCTTCGATTGATCTTTCTCGATCAATCTCACCGCCTCCTCATAATTATTCAAATAATATCCAGGGATTGTGTATTCATTGATTGGCTCAATTAGACAGATCAAGTCTGCTCTTTGAATTTTTCAGCAGCAAAAAGAACATTTTCAGAGTAGACTTCTGAAGCGTTCGCCACGTCATCAGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGGATGTATCCTAAAAATGAA</pcr_primer_p1>
		<pcr_primer_p2>AATTTCAGTCGGTCAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTGGATGTATCCTAAAAATGAATTTTAAAGAAGTTCCCTTTTATGGCTTCCATCCGGAACTAGCCGATTGCCGATCTGGCCGACCGAATTTTCACAATCGCGCGTCAAAATGCTAGAGCGTGTTTGCGTACGCAGCAGCTTATTTTACGACGCACGATGCTTCGTACGCAAACACTCTCTGGCATGGTGACGCGCAAATGCAAAATTTCGGTCGGCCGGCGGTCCCCGATTTTTGACCGACTGAAATT</canonical_amplicon>
		<polymorphic_amplicon>CTTGGATGTATCCTAAAAATGAATTTTAAAGAAGTTCCCTTTTATGGCTTCCATCCGGAACTAGCCGAYTGCCGATCTGGCCGACCGAATTTTCACAATCGCGCGTCAAAATGCTAGAGCGTGTTTGCGTACGCAGCAGCTTATTTTACGACGCACGATGCTTCGTACGCAAACACTCTCTGGCATGGTGACGCGCAAATGCAAAATTTCGGTCGGCCGGCGGTCCCCGATTTTTGACCGACTGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17963</snp_id>
        <super_contig>c010801095.Contig3</super_contig>
        <contig_pos>15954</contig_pos>
        <strand>+</strand>
        <context>ACTAGCCGAY[C/T]GCCGATCTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAATTTTAAAGAAGTTCCCTTTTATGGCTTCCATCCGGAACTAGCCGAT</left_flank>
        <right_flank>GCCGATCTGGCCGACCGAATTTTCACAATCGCGCGTCAAAATGCTAGAGC</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACAGTAATTCGGGATAATGATGGAGAAAACAGACTCCGAAGGGTGAAATCTGATGGGAAATTCAATTTTCCTACTCTCCACTCTTCTACAGTAACTCTAAACCTAGAAAATTTCAAATGTCGTAAGATTCAATGTTTTGGATGTATTTTGGAGTTTAATGTTTTGTTTTGTTTTTATGTATTTTAATAATGTTATGTTTTTTAATGTTTTAGAGTCAGGGTACAGATAGCAAAACAATTTATTAGATTGAAAGAAAGTTTAAAAACTGCATCCCATATTTTCGACCCAATTGAACGACTCGTTCGAGTTTCCGACATATTCTGCACCAATGATCCAGTTAGAATCGATCGCTCGAATTTCATCAAAAACGAAATTGTAATCCAGCTCACCACGGTTATCGCATGCTCCGCGAGCCGGAACCTGAGCTACTTGGATGTATCCTAAAAATGAATTTTAAAGAAGTTCCCTTTTATGGCTTCCATCCGGAACTAGCCGATTGCCGATCTGGCCGACCGAATTTTCACAATCGCGCGTCAAAATGCTAGAGCGTGTTTGCGTACGCAGCAGCTTATTTTACGACGCACGATGCTTCGTACGCAAACACTCTCTGGCATGGTGACGCGCAAATGCAAAATTTCGGTCGGCCGGCGGTCCCCGATTTTTGACCGACTGAAATTGAAACCTACCAATGTGCTCTTTCAATTTTCTCATCGTTGCTCCAATCTGACCGTTGATTTGTTGAGCATGAAATGTGTCCTGAACATTTTGAATTTTCTCAGATTTTTCAGAAACACCTTACATATTGAATTTTCAAATTCTTCGATTGATCTTTCTCGATCAATCTCACCGCCTCCTCATAATTATTCAAATAATATCCAGGGATTGTGTATTCATTGATTGGCTCAATTAGACAGATCAAGTCTGCTCTTTGAATTTTTCAGCAGCAAAAAGAACATTTTCAGAGTAGACTTCTGAAGCGTTCGCCACGTCATCAGCGG</canonical>
            <polymorphic>GTACAGTAATTCGGGATAATGATGGAGAAAACAGACTCCGAAGGGTGAAATCTGATGGGAAATTCAATTTTCCTACTCTCCACTCTTCTACAGTAACTCTAAACCTAGAAAATTTCAAATGTCGTAAGATTCAATGTTTTGGATGTATTTTGGAGTTTAATGTTTTGTTTTGTTTTTATGTATTTTAATAATGTTATGTTTTTTAATGTTTTAGAGTCAGGGTACAGATAGCAAAACAATTTATTAGATTGAAAGAAAGTTTAAAAACTGCATCCCATATTTTCGACCCAATTGAACGACTCGTTCGAGTTTCCGACATATTCTGCACCAATGATCCAGTTAGAATCGATCGCTCGAATTTCATCAAAAACGAAATTGTAATCCAGCTCACCACGGTTATCGCATGCTCCGCGAGCCGGAACCTGAGCTACTTGGATGTATCCTAAAAATGAATTTTAAAGAAGTTCCCTTTTATGGCTTCCATCCGGAACTAGCCGATYGCCGATCTGGCCGACCGAATTTTCACAATCGCGCGTCAAAATGCTAGAGCGTGTTTGCGTACGCAGCAGCTTATTTTACGACGCACGATGCTTCGTACGCAAACACTCTCTGGCATGGTGACGCGCAAATGCAAAATTTCGGTCGGCCGGCGGTCCCCGATTTTTGACCGACTGAAATTGAAACCTACCAATGTGCTCTTTCAATTTTCTCATCGTTGCTCCAATCTGACCGTTGATTTGTTGAGCATGAAATGTGTCCTGAACATTTTGAATTTTCTCAGATTTTTCAGAAACACCTTACATATTGAATTTTCAAATTCTTCGATTGATCTTTCTCGATCAATCTCACCGCCTCCTCATAATTATTCAAATAATATCCAGGGATTGTGTATTCATTGATTGGCTCAATTAGACAGATCAAGTCTGCTCTTTGAATTTTTCAGCAGCAAAAAGAACATTTTCAGAGTAGACTTCTGAAGCGTTCGCCACGTCATCAGCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGGATGTATCCTAAAAATGAA</pcr_primer_p1>
		<pcr_primer_p2>AATTTCAGTCGGTCAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTGGATGTATCCTAAAAATGAATTTTAAAGAAGTTCCCTTTTATGGCTTCCATCCGGAACTAGCCGATTGCCGATCTGGCCGACCGAATTTTCACAATCGCGCGTCAAAATGCTAGAGCGTGTTTGCGTACGCAGCAGCTTATTTTACGACGCACGATGCTTCGTACGCAAACACTCTCTGGCATGGTGACGCGCAAATGCAAAATTTCGGTCGGCCGGCGGTCCCCGATTTTTGACCGACTGAAATT</canonical_amplicon>
		<polymorphic_amplicon>CTTGGATGTATCCTAAAAATGAATTTTAAAGAAGTTCCCTTTTATGGCTTCCATCCGGAACTAGCCGATYGCCGATCTGGCCGACCGAATTTTCACAATCGCGCGTCAAAATGCTAGAGCGTGTTTGCGTACGCAGCAGCTTATTTTACGACGCACGATGCTTCGTACGCAAACACTCTCTGGCATGGTGACGCGCAAATGCAAAATTTCGGTCGGCCGGCGGTCCCCGATTTTTGACCGACTGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17984</snp_id>
        <super_contig>c010801095.Contig3</super_contig>
        <contig_pos>19212</contig_pos>
        <strand></strand>
        <context>TTAGWGTTCa[A/G]aattaattaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGTAATAAAGCAAAACAAAAAAGATAAGAGACCGACAGTTTAGAGTTCA</left_flank>
        <right_flank>AATTAATTAATTAATTTTTAGCATTTCGGGGACTACTGTAGGTGGTGCAC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAATTTCAACTTTTGACTTTTAGTTGAAAGTGCGCTCTTTTAAAATTAAAAAATCTATTAAAAAAGCAAGTGAAAATAATTTATTAGGACACACAGACACACAGTCAGACAAACACAAAAACCGGCAAACTGAGAAAAAGAAAAAACTCATTAGAACCAAAGAAAAATGAGAGATCAAATCCCGTTTTTTAGGAGCACAGCAAACGAAAAAAAAACAGAAAACAGGAATCACGGCACACTTAACCAAAAATACGAATCATCCGACGATTGTTGTTAGTTGCTTGGTTAGAAGAAGGCAATCCCGCGTATCGAGACTGCAAAAATTTCAAAATTGGTTAGAAAGCAAATGCGCTCTACGGACAAAAACTTGTCTAGGCGTTTCTATTGCAAGTGTGGCAAACAGTGAACACTGCACACGGTTAGTTAACACACACAGCAAAATCGCTCTAGTAATAAAGCAAAACAAAAAAGATAAGAGACCGACAGTTTAGAGTTCAAAATTAATTAATTAATTTTTAGCATTTCGGGGACTACTGTAGGTGGTGCACACTCAAACCTGAGGATGATTGTTGACGATGGAATTTGTGTTGATTTGATTGTTATTGGAATTGGAATTGGAATTTGAAGATCCCCCAGATGGACAATTGTACAATTTATTGATTTTCCGAACATCAACATCCGAAAACTTGACACGTTGACCCATTCTTTCGGAGCCAGACTGCAATTGTTTTGTTTCAAACTTCAATTCTAACGGTTCAATAGAGCGGACTAGCGAACTTACTTTCTTTGGCACCAGGGTCTTTTTGCCTGATCCACTGAATGCGTATGGTCCATAATGCATAATAGAGGCATAGTCATATGGCTCATCCAAATGAGAAATGACATTCAGATTGTATTTTTCGAATTGATCATCGGCTCCATTCATCACATTCTGCCAGACGACATCGATGTAGCTGTCACGGTCTTGTCTGGAAATTTCAGAATTTAGGAACATACTT</canonical>
            <polymorphic>TAAAATTTCAACTTTTGACTTTTAGTTGAAAGTGCGCTCTTTTAAAATTAAAAAATCTATTAAAAAAGCAAGTGAAAATAATTTATTAGGACACACAGACACACAGTCAGACAAACACAAAAACCGGCAAACTGAGAAAAAGAAAAAACTCATTAGAACCAAAGAAAAATGAGAGATCAAATCCCGTTTTTTAGGAGCACAGCAAACGAAAAAAAAACAGAAAACAGGAATCACGGCACACTTAACCAAAAATACGAATCATCCGACGATTGTTGTTAGTTGCTTGGTTAGAAGAAGGCAATCCCGCGTATCGAGACTGCAAAAATTTCAAAATTGGTTAGAAAGCAAATGCGCTCTACGGACAAAAACTTGTCTAGGCGTTTCTATTGCAAGTGTGGCAAACAGTGAACACTGCACACGGTTAGTTAACACACACAGCAAAATCGCTCTAGTAATAAAGCAAAACAAAAAAGATAAGAGACCGACAGTTTAGAGTTCARAATTAATTAATTAATTTTTAGCATTTCGGGGACTACTGTAGGTGGTGCACACTCAAACCTGAGGATGATTGTTGACGATGGAATTTGTGTTGATTTGATTGTTATTGGAATTGGAATTGGAATTTGAAGATCCCCCAGATGGACAATTGTACAATTTATTGATTTTCCGAACATCAACATCCGAAAACTTGACACGTTGACCCATTCTTTCGGAGCCAGACTGCAATTGTTTTGTTTCAAACTTCAATTCTAACGGTTCAATAGAGCGGACTAGCGAACTTACTTTCTTTGGCACCAGGGTCTTTTTGCCTGATCCACTGAATGCGTATGGTCCATAATGCATAATAGAGGCATAGTCATATGGCTCATCCAAATGAGAAATGACATTCAGATTGTATTTTTCGAATTGATCATCGGCTCCATTCATCACATTCTGCCAGACGACATCGATGTAGCTGTCACGGTCTTGTCTGGAAATTTCAGAATTTAGGAACATACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTACGGACAAAAACTTGTCTA</pcr_primer_p1>
		<pcr_primer_p2>AACAATCAAATCAACACAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTACGGACAAAAACTTGTCTAGGCGTTTCTATTGCAAGTGTGGCAAACAGTGAACACTGCACACGGTTAGTTAACACACACAGCAAAATCGCTCTAGTAATAAAGCAAAACAAAAAAGATAAGAGACCGACAGTTTAGAGTTCAAAATTAATTAATTAATTTTTAGCATTTCGGGGACTACTGTAGGTGGTGCACACTCAAACCTGAGGATGATTGTTGACGATGGAATTTGTGTTGATTTGATTGTT</canonical_amplicon>
		<polymorphic_amplicon>CTCTACGGACAAAAACTTGTCTAGGCGTTTCTATTGCAAGTGTGGCAAACAGTGAACACTGCACACGGTTAGTTAACACACACAGCAAAATCGCTCTAGTAATAAAGCAAAACAAAAAAGATAAGAGACCGACAGTTTAGAGTTCARAATTAATTAATTAATTTTTAGCATTTCGGGGACTACTGTAGGTGGTGCACACTCAAACCTGAGGATGATTGTTGACGATGGAATTTGTGTTGATTTGATTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17986</snp_id>
        <super_contig>c010801095.Contig3</super_contig>
        <contig_pos>19206</contig_pos>
        <strand>+</strand>
        <context>GACAGTTTAG[A/T]GTTCaraatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGCTCTAGTAATAAAGCAAAACAAAAAAGATAAGAGACCGACAGTTTAG</left_flank>
        <right_flank>GTTCAAAATTAATTAATTAATTTTTAGCATTTCGGGGACTACTGTAGGTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTAAAATTTCAACTTTTGACTTTTAGTTGAAAGTGCGCTCTTTTAAAATTAAAAAATCTATTAAAAAAGCAAGTGAAAATAATTTATTAGGACACACAGACACACAGTCAGACAAACACAAAAACCGGCAAACTGAGAAAAAGAAAAAACTCATTAGAACCAAAGAAAAATGAGAGATCAAATCCCGTTTTTTAGGAGCACAGCAAACGAAAAAAAAACAGAAAACAGGAATCACGGCACACTTAACCAAAAATACGAATCATCCGACGATTGTTGTTAGTTGCTTGGTTAGAAGAAGGCAATCCCGCGTATCGAGACTGCAAAAATTTCAAAATTGGTTAGAAAGCAAATGCGCTCTACGGACAAAAACTTGTCTAGGCGTTTCTATTGCAAGTGTGGCAAACAGTGAACACTGCACACGGTTAGTTAACACACACAGCAAAATCGCTCTAGTAATAAAGCAAAACAAAAAAGATAAGAGACCGACAGTTTAGAGTTCAAAATTAATTAATTAATTTTTAGCATTTCGGGGACTACTGTAGGTGGTGCACACTCAAACCTGAGGATGATTGTTGACGATGGAATTTGTGTTGATTTGATTGTTATTGGAATTGGAATTGGAATTTGAAGATCCCCCAGATGGACAATTGTACAATTTATTGATTTTCCGAACATCAACATCCGAAAACTTGACACGTTGACCCATTCTTTCGGAGCCAGACTGCAATTGTTTTGTTTCAAACTTCAATTCTAACGGTTCAATAGAGCGGACTAGCGAACTTACTTTCTTTGGCACCAGGGTCTTTTTGCCTGATCCACTGAATGCGTATGGTCCATAATGCATAATAGAGGCATAGTCATATGGCTCATCCAAATGAGAAATGACATTCAGATTGTATTTTTCGAATTGATCATCGGCTCCATTCATCACATTCTGCCAGACGACATCGATGTAGCTGTCACGGTCTTGTCTGGAAATTTCAGAATTTAGGAAC</canonical>
            <polymorphic>ATTTTTTAAAATTTCAACTTTTGACTTTTAGTTGAAAGTGCGCTCTTTTAAAATTAAAAAATCTATTAAAAAAGCAAGTGAAAATAATTTATTAGGACACACAGACACACAGTCAGACAAACACAAAAACCGGCAAACTGAGAAAAAGAAAAAACTCATTAGAACCAAAGAAAAATGAGAGATCAAATCCCGTTTTTTAGGAGCACAGCAAACGAAAAAAAAACAGAAAACAGGAATCACGGCACACTTAACCAAAAATACGAATCATCCGACGATTGTTGTTAGTTGCTTGGTTAGAAGAAGGCAATCCCGCGTATCGAGACTGCAAAAATTTCAAAATTGGTTAGAAAGCAAATGCGCTCTACGGACAAAAACTTGTCTAGGCGTTTCTATTGCAAGTGTGGCAAACAGTGAACACTGCACACGGTTAGTTAACACACACAGCAAAATCGCTCTAGTAATAAAGCAAAACAAAAAAGATAAGAGACCGACAGTTTAGWGTTCAAAATTAATTAATTAATTTTTAGCATTTCGGGGACTACTGTAGGTGGTGCACACTCAAACCTGAGGATGATTGTTGACGATGGAATTTGTGTTGATTTGATTGTTATTGGAATTGGAATTGGAATTTGAAGATCCCCCAGATGGACAATTGTACAATTTATTGATTTTCCGAACATCAACATCCGAAAACTTGACACGTTGACCCATTCTTTCGGAGCCAGACTGCAATTGTTTTGTTTCAAACTTCAATTCTAACGGTTCAATAGAGCGGACTAGCGAACTTACTTTCTTTGGCACCAGGGTCTTTTTGCCTGATCCACTGAATGCGTATGGTCCATAATGCATAATAGAGGCATAGTCATATGGCTCATCCAAATGAGAAATGACATTCAGATTGTATTTTTCGAATTGATCATCGGCTCCATTCATCACATTCTGCCAGACGACATCGATGTAGCTGTCACGGTCTTGTCTGGAAATTTCAGAATTTAGGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTACGGACAAAAACTTGTCTA</pcr_primer_p1>
		<pcr_primer_p2>AACAATCAAATCAACACAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTACGGACAAAAACTTGTCTAGGCGTTTCTATTGCAAGTGTGGCAAACAGTGAACACTGCACACGGTTAGTTAACACACACAGCAAAATCGCTCTAGTAATAAAGCAAAACAAAAAAGATAAGAGACCGACAGTTTAGAGTTCAAAATTAATTAATTAATTTTTAGCATTTCGGGGACTACTGTAGGTGGTGCACACTCAAACCTGAGGATGATTGTTGACGATGGAATTTGTGTTGATTTGATTGTT</canonical_amplicon>
		<polymorphic_amplicon>CTCTACGGACAAAAACTTGTCTAGGCGTTTCTATTGCAAGTGTGGCAAACAGTGAACACTGCACACGGTTAGTTAACACACACAGCAAAATCGCTCTAGTAATAAAGCAAAACAAAAAAGATAAGAGACCGACAGTTTAGWGTTCAAAATTAATTAATTAATTTTTAGCATTTCGGGGACTACTGTAGGTGGTGCACACTCAAACCTGAGGATGATTGTTGACGATGGAATTTGTGTTGATTTGATTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17987</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>64442</contig_pos>
        <strand></strand>
        <context>ACCCGAGTCG[A/T]CCATTTTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TACGCCGGCCGCCTAGAAGTGCACTGTAACACCGACATTAACCCGAGTCG</left_flank>
        <right_flank>CCATTTTGAAGAGTTGCCAATTTGTTCTCGGAGCACAAACTACACAAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGCTTTTTTTGGAATTTTCGAACAAATTTTTCCCGAAATTTCGAAAATTCCCATTCTTGTAAAATTCCGGGCCCGGGCCTGAGGAAATTTTCAAGGCCCGGGCCCGGCCCGGAAGGCCCGGTGTCAAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATATTTTTTTCCCTTTTTTTTCGTATTTCGGATTGTTTGTCTGTCTGATCAAAAAAGATCGAAAAACTCGAAAAAAATTTTTTAGTCGAAAAAAATCACATAAGGGTCCCCCCTTATGTGTTTTTTGAAAAGTTCGAAACTAGTGAAATGACGGGCCCACCGGGCCGGGCTCGGGTCGGGCCTCCGAAATTCCGGAAAAAGCCCGGCCCGGCCCGTTACAAGTATGAAAATTCCTGTTTTCTGGAATTTTCAGCCTCTCACCATCGCATAGCTCTCCATAAAATACGCCGGCCGCCTAGAAGTGCACTGTAACACCGACATTAACCCGAGTCGACCATTTTGAAGAGTTGCCAATTTGTTCTCGGAGCACAAACTACACAAATTGCCAATTGCTTTCAGACAATTCAGTTTCAGCTCTCCGACACGTGGCAGTCCAATGAGATCATCCAGTTGACAGTATTGATGGAATACTGTAGTTGAAAGTTGGTGGAGAGATTCAGATGTCTCGATTCGCTGGATTTTTGATGGTGGCTGAAAATTCAAGGAAGTTCTAATTTTTTGAAATTTTCAGATTTTTTAAATTTCTGAAAATCGGATTTTTAGAACTTTCTGGAATTTTTGATTTTCTGATTTTTTTCATCTTGATTACCGGCTGCTTCGGTCGGTCTGTATATCTTCTCTGCGTCTCTTCATATCTCCTCTCCTCTTCAATTTTCTCTCGAAGCGTCTGGGATCTCGGATTATTGTCATCTGGAACTTCTGGCCAATTTTCTGGCTGGGCCGCTCGAAAATCGGCGAACAGCGATTCGGCGTGTAGGATCTGAAAAAGCGGAC</canonical>
            <polymorphic>ATGCTTTTTTTGGAATTTTCGAACAAATTTTTCCCGAAATTTCGAAAATTCCCATTCTTGTAAAATTCCGGGCCCGGGCCTGAGGAAATTTTCAAGGCCCGGGCCCGGCCCGGAAGGCCCGGTGTCAAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATATTTTTTTCCCTTTTTTTTCGTATTTCGGATTGTTTGTCTGTCTGATCAAAAAAGATCGAAAAACTCGAAAAAAATTTTTTAGTCGAAAAAAATCACATAAGGGTCCCCCCTTATGTGTTTTTTGAAAAGTTCGAAACTAGTGAAATGACGGGCCCACCGGGCCGGGCTCGGGTCGGGCCTCCGAAATTCCGGAAAAAGCCCGGCCCGGCCCGTTACAAGTATGAAAATTCCTGTTTTCTGGAATTTTCAGCCTCTCACCATCGCATAGCTCTCCATAAAATACGCCGGCCGCCTAGAAGTGCACTGTAACACCGACATTAACCCGAGTCGWCCATTTTGAAGAGTTGCCAATTTGTTCTCGGAGCACAAACTACACAAATTGCCAATTGCTTTCAGACAATTCAGTTTCAGCTCTCCGACACGTGGCAGTCCAATGAGATCATCCAGTTGACAGTATTGATGGAATACTGTAGTTGAAAGTTGGTGGAGAGATTCAGATGTCTCGATTCGCTGGATTTTTGATGGTGGCTGAAAATTCAAGGAAGTTCTAATTTTTTGAAATTTTCAGATTTTTTAAATTTCTGAAAATCGGATTTTTAGAACTTTCTGGAATTTTTGATTTTCTGATTTTTTTCATCTTGATTACCGGCTGCTTCGGTCGGTCTGTATATCTTCTCTGCGTCTCTTCATATCTCCTCTCCTCTTCAATTTTCTCTCGAAGCGTCTGGGATCTCGGATTATTGTCATCTGGAACTTCTGGCCAATTTTCTGGCTGGGCCGCTCGAAAATCGGCGAACAGCGATTCGGCGTGTAGGATCTGAAAAAGCGGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>213 197 183 175 66 48 48 23 20 18 9</canonical_bands>
                <polymorphic_bands>372 213 183 66 48 48 23 20 18 9</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>498 382 120</canonical_bands>
                <polymorphic_bands>618 382</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>470 382 120 28</canonical_bands>
                <polymorphic_bands>470 382 148</polymorphic_bands>
            </assay>
            <assay>
                <site>GTCGAC</site>
                <isoschizomers>
                    <enzyme>SalI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTATGAAAATTCCTGTTTTCTG</pcr_primer_p1>
		<pcr_primer_p2>TATTCCATCAATACTGTCAACTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTATGAAAATTCCTGTTTTCTGGAATTTTCAGCCTCTCACCATCGCATAGCTCTCCATAAAATACGCCGGCCGCCTAGAAGTGCACTGTAACACCGACATTAACCCGAGTCGACCATTTTGAAGAGTTGCCAATTTGTTCTCGGAGCACAAACTACACAAATTGCCAATTGCTTTCAGACAATTCAGTTTCAGCTCTCCGACACGTGGCAGTCCAATGAGATCATCCAGTTGACAGTATTGATGGAATA</canonical_amplicon>
		<polymorphic_amplicon>AGTATGAAAATTCCTGTTTTCTGGAATTTTCAGCCTCTCACCATCGCATAGCTCTCCATAAAATACGCCGGCCGCCTAGAAGTGCACTGTAACACCGACATTAACCCGAGTCGWCCATTTTGAAGAGTTGCCAATTTGTTCTCGGAGCACAAACTACACAAATTGCCAATTGCTTTCAGACAATTCAGTTTCAGCTCTCCGACACGTGGCAGTCCAATGAGATCATCCAGTTGACAGTATTGATGGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17988</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>64589</contig_pos>
        <strand></strand>
        <context>CTGTAGTTGA[A/C]AGTTGGTGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTCCAATGAGATCATCCAGTTGACAGTATTGATGGAATACTGTAGTTGA</left_flank>
        <right_flank>AGTTGGTGGAGAGATTCAGATGTCTCGATTCGCTGGATTTTTGATGGTGG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATTTTGAGCTCTCAATATATTTTTTTCCCTTTTTTTTCGTATTTCGGATTGTTTGTCTGTCTGATCAAAAAAGATCGAAAAACTCGAAAAAAATTTTTTAGTCGAAAAAAATCACATAAGGGTCCCCCCTTATGTGTTTTTTGAAAAGTTCGAAACTAGTGAAATGACGGGCCCACCGGGCCGGGCTCGGGTCGGGCCTCCGAAATTCCGGAAAAAGCCCGGCCCGGCCCGTTACAAGTATGAAAATTCCTGTTTTCTGGAATTTTCAGCCTCTCACCATCGCATAGCTCTCCATAAAATACGCCGGCCGCCTAGAAGTGCACTGTAACACCGACATTAACCCGAGTCGACCATTTTGAAGAGTTGCCAATTTGTTCTCGGAGCACAAACTACACAAATTGCCAATTGCTTTCAGACAATTCAGTTTCAGCTCTCCGACACGTGGCAGTCCAATGAGATCATCCAGTTGACAGTATTGATGGAATACTGTAGTTGAAAGTTGGTGGAGAGATTCAGATGTCTCGATTCGCTGGATTTTTGATGGTGGCTGAAAATTCAAGGAAGTTCTAATTTTTTGAAATTTTCAGATTTTTTAAATTTCTGAAAATCGGATTTTTAGAACTTTCTGGAATTTTTGATTTTCTGATTTTTTTCATCTTGATTACCGGCTGCTTCGGTCGGTCTGTATATCTTCTCTGCGTCTCTTCATATCTCCTCTCCTCTTCAATTTTCTCTCGAAGCGTCTGGGATCTCGGATTATTGTCATCTGGAACTTCTGGCCAATTTTCTGGCTGGGCCGCTCGAAAATCGGCGAACAGCGATTCGGCGTGTAGGATCTGAAAAAGCGGACATCTGGATAAACGGACAGACAGATGGAACATTGGACCTACCGTATCCAGAACATCAACGACGGCATTGATAGCGGTGGCTTTTTCGTTTAGATATGATGTCATTTCAATGTTGGTGCACATTTCCCCTGGAAGAAATTTTCTTTCTT</canonical>
            <polymorphic>CAAATTTTGAGCTCTCAATATATTTTTTTCCCTTTTTTTTCGTATTTCGGATTGTTTGTCTGTCTGATCAAAAAAGATCGAAAAACTCGAAAAAAATTTTTTAGTCGAAAAAAATCACATAAGGGTCCCCCCTTATGTGTTTTTTGAAAAGTTCGAAACTAGTGAAATGACGGGCCCACCGGGCCGGGCTCGGGTCGGGCCTCCGAAATTCCGGAAAAAGCCCGGCCCGGCCCGTTACAAGTATGAAAATTCCTGTTTTCTGGAATTTTCAGCCTCTCACCATCGCATAGCTCTCCATAAAATACGCCGGCCGCCTAGAAGTGCACTGTAACACCGACATTAACCCGAGTCGACCATTTTGAAGAGTTGCCAATTTGTTCTCGGAGCACAAACTACACAAATTGCCAATTGCTTTCAGACAATTCAGTTTCAGCTCTCCGACACGTGGCAGTCCAATGAGATCATCCAGTTGACAGTATTGATGGAATACTGTAGTTGAMAGTTGGTGGAGAGATTCAGATGTCTCGATTCGCTGGATTTTTGATGGTGGCTGAAAATTCAAGGAAGTTCTAATTTTTTGAAATTTTCAGATTTTTTAAATTTCTGAAAATCGGATTTTTAGAACTTTCTGGAATTTTTGATTTTCTGATTTTTTTCATCTTGATTACCGGCTGCTTCGGTCGGTCTGTATATCTTCTCTGCGTCTCTTCATATCTCCTCTCCTCTTCAATTTTCTCTCGAAGCGTCTGGGATCTCGGATTATTGTCATCTGGAACTTCTGGCCAATTTTCTGGCTGGGCCGCTCGAAAATCGGCGAACAGCGATTCGGCGTGTAGGATCTGAAAAAGCGGACATCTGGATAAACGGACAGACAGATGGAACATTGGACCTACCGTATCCAGAACATCAACGACGGCATTGATAGCGGTGGCTTTTTCGTTTAGATATGATGTCATTTCAATGTTGGTGCACATTTCCCCTGGAAGAAATTTTCTTTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGCTTTCAGACAATTCAGT</pcr_primer_p1>
		<pcr_primer_p2>AGAAAATCAAAAATTCCAGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>AATTGCTTTCAGACAATTCAGTTTCAGCTCTCCGACACGTGGCAGTCCAATGAGATCATCCAGTTGACAGTATTGATGGAATACTGTAGTTGAAAGTTGGTGGAGAGATTCAGATGTCTCGATTCGCTGGATTTTTGATGGTGGCTGAAAATTCAAGGAAGTTCTAATTTTTTGAAATTTTCAGATTTTTTAAATTTCTGAAAATCGGATTTTTAGAACTTTCTGGAATTTTTGATTTTCT</canonical_amplicon>
		<polymorphic_amplicon>AATTGCTTTCAGACAATTCAGTTTCAGCTCTCCGACACGTGGCAGTCCAATGAGATCATCCAGTTGACAGTATTGATGGAATACTGTAGTTGAMAGTTGGTGGAGAGATTCAGATGTCTCGATTCGCTGGATTTTTGATGGTGGCTGAAAATTCAAGGAAGTTCTAATTTTTTGAAATTTTCAGATTTTTTAAATTTCTGAAAATCGGATTTTTAGAACTTTCTGGAATTTTTGATTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17989</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>68108</contig_pos>
        <strand>+</strand>
        <context>TTTCTTTTTT[A/G]AAGTTGTAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTAAATTGTTGCTACTCTAGGGCTACTGTACATCTCAATTTTCTTTTTT</left_flank>
        <right_flank>AAGTTGTAGGATTACGGTAGATCCAAATTTACGATAATACTTTAATTAGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACTGTCAAAAAACGGCGGTAAAAATTCAAAACATCAACTAATTCTGTCTTCCAGGAAACAGTGAATTCTCAAAAATCCAATCGGCCGATGTGTCTGCCATCATTTCCGATTTTTCCGAATTCGTCAATCGATCCATGATTTTTTCAGCTACAGTAGGAACGATTCGTTTCGCGTGTTTTCCAATCGAGAGTAGGCGGATTGGGATTTTATGGAGGAGAATGTGAAGGCATGCTGAGTGGCCGGTGGTCCAGGAGATCATTGTAGTGCGCTGGAAAAAAGGAGATTTTGGGTTACTGTAGAATTACTGTAAATTTGAATCTTGTGAGTCGTTACTACTGTATGACTAATGTATACCCAAATCTTGTAAAATGTGGTTACTGTAGGGCTATGGTAGATCTAAATTTTGCGAATCGTGGTTACTGTAAGATTACTGTAGATTCTGGATTTTTAAATTGTTGCTACTCTAGGGCTACTGTACATCTCAATTTTCTTTTTTGAAGTTGTAGGATTACGGTAGATCCAAATTTACGATAATACTTTAATTAGGGCAAGGGTACAATTTTGAAAAATCTGAGTTACTGTAGTCGCAGTTACTGTAGCTAGAAAAGGATTACTGTAGGAAAAAAAAATATTCGAAAATCGAAAGGATTACTGTAGATTCGAATTTTGAACTTTTTCATTTCTATAAGATTACGGTAACTGAAAATTCTAGGAAACTCTAAAAATGAAAAAAAAACCGACCGATTATTTTAAATCTAGGGATTACTGTAGCGGGAGCTACTATAGGTAGAGAGGGCTTACTGTAGGGGAAAACATTGAAAATCAAAAAGATTACTGTAGATTTGAATTTTGTTAATTCTGCTTACTGTGTGGCTACTGTAGATCCTTACGATAAAACTTCAAATAGGGTTACTGTATTATTTTTTTTGGAAAATCTAGGGATTACTGTAGAGGTTGCTGTAGCTGGAAAAGGGATACGGTCAGAATTTCAGAATTT</canonical>
            <polymorphic>AAAACTGTCAAAAAACGGCGGTAAAAATTCAAAACATCAACTAATTCTGTCTTCCAGGAAACAGTGAATTCTCAAAAATCCAATCGGCCGATGTGTCTGCCATCATTTCCGATTTTTCCGAATTCGTCAATCGATCCATGATTTTTTCAGCTACAGTAGGAACGATTCGTTTCGCGTGTTTTCCAATCGAGAGTAGGCGGATTGGGATTTTATGGAGGAGAATGTGAAGGCATGCTGAGTGGCCGGTGGTCCAGGAGATCATTGTAGTGCGCTGGAAAAAAGGAGATTTTGGGTTACTGTAGAATTACTGTAAATTTGAATCTTGTGAGTCGTTACTACTGTATGACTAATGTATACCCAAATCTTGTAAAATGTGGTTACTGTAGGGCTATGGTAGATCTAAATTTTGCGAATCGTGGTTACTGTAAGATTACTGTAGATTCTGGATTTTTAAATTGTTGCTACTCTAGGGCTACTGTACATCTCAATTTTCTTTTTTRAAGTTGTAGGATTACGGTAGATCCAAATTTACGATAATACTTTAATTAGGGCAAGGGTACAATTTTGAAAAATCTGAGTTACTGTAGTCGCAGTTACTGTAGCTAGAAAAGGATTACTGTAGGAAAAAAAAATATTCGAAAATCGAAAGGATTACTGTAGATTCGAATTTTGAACTTTTTCATTTCTATAAGATTACGGTAACTGAAAATTCTAGGAAACTCTAAAAATGAAAAAAAAACCGACCGATTATTTTAAATCTAGGGATTACTGTAGCGGGAGCTACTATAGGTAGAGAGGGCTTACTGTAGGGGAAAACATTGAAAATCAAAAAGATTACTGTAGATTTGAATTTTGTTAATTCTGCTTACTGTGTGGCTACTGTAGATCCTTACGATAAAACTTCAAATAGGGTTACTGTATTATTTTTTTTGGAAAATCTAGGGATTACTGTAGAGGTTGCTGTAGCTGGAAAAGGGATACGGTCAGAATTTCAGAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAATCTTGTAAAATGTGGTTA</pcr_primer_p1>
		<pcr_primer_p2>TAGCTACAGTAACTGCGACTACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCAAATCTTGTAAAATGTGGTTACTGTAGGGCTATGGTAGATCTAAATTTTGCGAATCGTGGTTACTGTAAGATTACTGTAGATTCTGGATTTTTAAATTGTTGCTACTCTAGGGCTACTGTACATCTCAATTTTCTTTTTTGAAGTTGTAGGATTACGGTAGATCCAAATTTACGATAATACTTTAATTAGGGCAAGGGTACAATTTTGAAAAATCTGAGTTACTGTAGTCGCAGTTACTGTAGCTA</canonical_amplicon>
		<polymorphic_amplicon>CCAAATCTTGTAAAATGTGGTTACTGTAGGGCTATGGTAGATCTAAATTTTGCGAATCGTGGTTACTGTAAGATTACTGTAGATTCTGGATTTTTAAATTGTTGCTACTCTAGGGCTACTGTACATCTCAATTTTCTTTTTTRAAGTTGTAGGATTACGGTAGATCCAAATTTACGATAATACTTTAATTAGGGCAAGGGTACAATTTTGAAAAATCTGAGTTACTGTAGTCGCAGTTACTGTAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17990</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>68065</contig_pos>
        <strand>+</strand>
        <context>ATTTTTAAAT[C/T]GTTGCTACTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGCGAATCGTGGTTACTGTAAGATTACTGTAGATTCTGGATTTTTAAAT</left_flank>
        <right_flank>GTTGCTACTCTAGGGCTACTGTACATCTCAATTTTCTTTTTTGAAGTTGT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGGGGTGACTAGAACATGAGAAAATGCACAAATATGTGAAAAAACTGTCAAAAAACGGCGGTAAAAATTCAAAACATCAACTAATTCTGTCTTCCAGGAAACAGTGAATTCTCAAAAATCCAATCGGCCGATGTGTCTGCCATCATTTCCGATTTTTCCGAATTCGTCAATCGATCCATGATTTTTTCAGCTACAGTAGGAACGATTCGTTTCGCGTGTTTTCCAATCGAGAGTAGGCGGATTGGGATTTTATGGAGGAGAATGTGAAGGCATGCTGAGTGGCCGGTGGTCCAGGAGATCATTGTAGTGCGCTGGAAAAAAGGAGATTTTGGGTTACTGTAGAATTACTGTAAATTTGAATCTTGTGAGTCGTTACTACTGTATGACTAATGTATACCCAAATCTTGTAAAATGTGGTTACTGTAGGGCTATGGTAGATCTAAATTTTGCGAATCGTGGTTACTGTAAGATTACTGTAGATTCTGGATTTTTAAATTGTTGCTACTCTAGGGCTACTGTACATCTCAATTTTCTTTTTTGAAGTTGTAGGATTACGGTAGATCCAAATTTACGATAATACTTTAATTAGGGCAAGGGTACAATTTTGAAAAATCTGAGTTACTGTAGTCGCAGTTACTGTAGCTAGAAAAGGATTACTGTAGGAAAAAAAAATATTCGAAAATCGAAAGGATTACTGTAGATTCGAATTTTGAACTTTTTCATTTCTATAAGATTACGGTAACTGAAAATTCTAGGAAACTCTAAAAATGAAAAAAAAACCGACCGATTATTTTAAATCTAGGGATTACTGTAGCGGGAGCTACTATAGGTAGAGAGGGCTTACTGTAGGGGAAAACATTGAAAATCAAAAAGATTACTGTAGATTTGAATTTTGTTAATTCTGCTTACTGTGTGGCTACTGTAGATCCTTACGATAAAACTTCAAATAGGGTTACTGTATTATTTTTTTTGGAAAATCTAGGGATTACTGTAGAGG</canonical>
            <polymorphic>TTCTGGGGTGACTAGAACATGAGAAAATGCACAAATATGTGAAAAAACTGTCAAAAAACGGCGGTAAAAATTCAAAACATCAACTAATTCTGTCTTCCAGGAAACAGTGAATTCTCAAAAATCCAATCGGCCGATGTGTCTGCCATCATTTCCGATTTTTCCGAATTCGTCAATCGATCCATGATTTTTTCAGCTACAGTAGGAACGATTCGTTTCGCGTGTTTTCCAATCGAGAGTAGGCGGATTGGGATTTTATGGAGGAGAATGTGAAGGCATGCTGAGTGGCCGGTGGTCCAGGAGATCATTGTAGTGCGCTGGAAAAAAGGAGATTTTGGGTTACTGTAGAATTACTGTAAATTTGAATCTTGTGAGTCGTTACTACTGTATGACTAATGTATACCCAAATCTTGTAAAATGTGGTTACTGTAGGGCTATGGTAGATCTAAATTTTGCGAATCGTGGTTACTGTAAGATTACTGTAGATTCTGGATTTTTAAATYGTTGCTACTCTAGGGCTACTGTACATCTCAATTTTCTTTTTTGAAGTTGTAGGATTACGGTAGATCCAAATTTACGATAATACTTTAATTAGGGCAAGGGTACAATTTTGAAAAATCTGAGTTACTGTAGTCGCAGTTACTGTAGCTAGAAAAGGATTACTGTAGGAAAAAAAAATATTCGAAAATCGAAAGGATTACTGTAGATTCGAATTTTGAACTTTTTCATTTCTATAAGATTACGGTAACTGAAAATTCTAGGAAACTCTAAAAATGAAAAAAAAACCGACCGATTATTTTAAATCTAGGGATTACTGTAGCGGGAGCTACTATAGGTAGAGAGGGCTTACTGTAGGGGAAAACATTGAAAATCAAAAAGATTACTGTAGATTTGAATTTTGTTAATTCTGCTTACTGTGTGGCTACTGTAGATCCTTACGATAAAACTTCAAATAGGGTTACTGTATTATTTTTTTTGGAAAATCTAGGGATTACTGTAGAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>182 141 105 100 90 68 54 51 42 39 33 24 18 17 17 10 9</canonical_bands>
                <polymorphic_bands>182 141 105 100 90 84 68 54 42 39 24 18 17 17 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAATCTTGTAAAATGTGGTTA</pcr_primer_p1>
		<pcr_primer_p2>TAGCTACAGTAACTGCGACTACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCAAATCTTGTAAAATGTGGTTACTGTAGGGCTATGGTAGATCTAAATTTTGCGAATCGTGGTTACTGTAAGATTACTGTAGATTCTGGATTTTTAAATTGTTGCTACTCTAGGGCTACTGTACATCTCAATTTTCTTTTTTGAAGTTGTAGGATTACGGTAGATCCAAATTTACGATAATACTTTAATTAGGGCAAGGGTACAATTTTGAAAAATCTGAGTTACTGTAGTCGCAGTTACTGTAGCTA</canonical_amplicon>
		<polymorphic_amplicon>CCAAATCTTGTAAAATGTGGTTACTGTAGGGCTATGGTAGATCTAAATTTTGCGAATCGTGGTTACTGTAAGATTACTGTAGATTCTGGATTTTTAAATYGTTGCTACTCTAGGGCTACTGTACATCTCAATTTTCTTTTTTGAAGTTGTAGGATTACGGTAGATCCAAATTTACGATAATACTTTAATTAGGGCAAGGGTACAATTTTGAAAAATCTGAGTTACTGTAGTCGCAGTTACTGTAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17991</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>68024</contig_pos>
        <strand>+</strand>
        <context>TTTGCGAATC[A/G]TGGTTACTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTAAAATGTGGTTACTGTAGGGCTATGGTAGATCTAAATTTTGCGAATC</left_flank>
        <right_flank>TGGTTACTGTAAGATTACTGTAGATTCTGGATTTTTAAATTGTTGCTACT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAGAGATCATTGGGAAGAAAAAGCAAAAATTCACAGAAAATTCTGGGGTGACTAGAACATGAGAAAATGCACAAATATGTGAAAAAACTGTCAAAAAACGGCGGTAAAAATTCAAAACATCAACTAATTCTGTCTTCCAGGAAACAGTGAATTCTCAAAAATCCAATCGGCCGATGTGTCTGCCATCATTTCCGATTTTTCCGAATTCGTCAATCGATCCATGATTTTTTCAGCTACAGTAGGAACGATTCGTTTCGCGTGTTTTCCAATCGAGAGTAGGCGGATTGGGATTTTATGGAGGAGAATGTGAAGGCATGCTGAGTGGCCGGTGGTCCAGGAGATCATTGTAGTGCGCTGGAAAAAAGGAGATTTTGGGTTACTGTAGAATTACTGTAAATTTGAATCTTGTGAGTCGTTACTACTGTATGACTAATGTATACCCAAATCTTGTAAAATGTGGTTACTGTAGGGCTATGGTAGATCTAAATTTTGCGAATCGTGGTTACTGTAAGATTACTGTAGATTCTGGATTTTTAAATTGTTGCTACTCTAGGGCTACTGTACATCTCAATTTTCTTTTTTGAAGTTGTAGGATTACGGTAGATCCAAATTTACGATAATACTTTAATTAGGGCAAGGGTACAATTTTGAAAAATCTGAGTTACTGTAGTCGCAGTTACTGTAGCTAGAAAAGGATTACTGTAGGAAAAAAAAATATTCGAAAATCGAAAGGATTACTGTAGATTCGAATTTTGAACTTTTTCATTTCTATAAGATTACGGTAACTGAAAATTCTAGGAAACTCTAAAAATGAAAAAAAAACCGACCGATTATTTTAAATCTAGGGATTACTGTAGCGGGAGCTACTATAGGTAGAGAGGGCTTACTGTAGGGGAAAACATTGAAAATCAAAAAGATTACTGTAGATTTGAATTTTGTTAATTCTGCTTACTGTGTGGCTACTGTAGATCCTTACGATAAAACTTCAAATAGGGTTAC</canonical>
            <polymorphic>CGAGAGATCATTGGGAAGAAAAAGCAAAAATTCACAGAAAATTCTGGGGTGACTAGAACATGAGAAAATGCACAAATATGTGAAAAAACTGTCAAAAAACGGCGGTAAAAATTCAAAACATCAACTAATTCTGTCTTCCAGGAAACAGTGAATTCTCAAAAATCCAATCGGCCGATGTGTCTGCCATCATTTCCGATTTTTCCGAATTCGTCAATCGATCCATGATTTTTTCAGCTACAGTAGGAACGATTCGTTTCGCGTGTTTTCCAATCGAGAGTAGGCGGATTGGGATTTTATGGAGGAGAATGTGAAGGCATGCTGAGTGGCCGGTGGTCCAGGAGATCATTGTAGTGCGCTGGAAAAAAGGAGATTTTGGGTTACTGTAGAATTACTGTAAATTTGAATCTTGTGAGTCGTTACTACTGTATGACTAATGTATACCCAAATCTTGTAAAATGTGGTTACTGTAGGGCTATGGTAGATCTAAATTTTGCGAATCRTGGTTACTGTAAGATTACTGTAGATTCTGGATTTTTAAATTGTTGCTACTCTAGGGCTACTGTACATCTCAATTTTCTTTTTTGAAGTTGTAGGATTACGGTAGATCCAAATTTACGATAATACTTTAATTAGGGCAAGGGTACAATTTTGAAAAATCTGAGTTACTGTAGTCGCAGTTACTGTAGCTAGAAAAGGATTACTGTAGGAAAAAAAAATATTCGAAAATCGAAAGGATTACTGTAGATTCGAATTTTGAACTTTTTCATTTCTATAAGATTACGGTAACTGAAAATTCTAGGAAACTCTAAAAATGAAAAAAAAACCGACCGATTATTTTAAATCTAGGGATTACTGTAGCGGGAGCTACTATAGGTAGAGAGGGCTTACTGTAGGGGAAAACATTGAAAATCAAAAAGATTACTGTAGATTTGAATTTTGTTAATTCTGCTTACTGTGTGGCTACTGTAGATCCTTACGATAAAACTTCAAATAGGGTTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>455 83 68 58 49 48 42 41 34 29 21 21 17 15 10 7 2</canonical_bands>
                <polymorphic_bands>497 83 68 58 49 48 41 34 29 21 21 17 15 10 7 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAATCTTGTAAAATGTGGTTA</pcr_primer_p1>
		<pcr_primer_p2>TAGCTACAGTAACTGCGACTACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCAAATCTTGTAAAATGTGGTTACTGTAGGGCTATGGTAGATCTAAATTTTGCGAATCGTGGTTACTGTAAGATTACTGTAGATTCTGGATTTTTAAATTGTTGCTACTCTAGGGCTACTGTACATCTCAATTTTCTTTTTTGAAGTTGTAGGATTACGGTAGATCCAAATTTACGATAATACTTTAATTAGGGCAAGGGTACAATTTTGAAAAATCTGAGTTACTGTAGTCGCAGTTACTGTAGCTA</canonical_amplicon>
		<polymorphic_amplicon>CCAAATCTTGTAAAATGTGGTTACTGTAGGGCTATGGTAGATCTAAATTTTGCGAATCRTGGTTACTGTAAGATTACTGTAGATTCTGGATTTTTAAATTGTTGCTACTCTAGGGCTACTGTACATCTCAATTTTCTTTTTTGAAGTTGTAGGATTACGGTAGATCCAAATTTACGATAATACTTTAATTAGGGCAAGGGTACAATTTTGAAAAATCTGAGTTACTGTAGTCGCAGTTACTGTAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17992</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>67937</contig_pos>
        <strand>+</strand>
        <context>AATCTTGTGA[A/G]TCGTTACTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGGAGATTTTGGGTTACTGTAGAATTACTGTAAATTTGAATCTTGTGA</left_flank>
        <right_flank>TCGTTACTACTGTATGACTAATGTATACCCAAATCTTGTAAAATGTGGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTGCTTTCACAATTTTTAGGTGAAAATATTCATTTTTTTTTAGTAAAAAAAGAGCTAAAGCTATGGGAAATTTTCAGAGAAAAAGCGAGAGATCATTGGGAAGAAAAAGCAAAAATTCACAGAAAATTCTGGGGTGACTAGAACATGAGAAAATGCACAAATATGTGAAAAAACTGTCAAAAAACGGCGGTAAAAATTCAAAACATCAACTAATTCTGTCTTCCAGGAAACAGTGAATTCTCAAAAATCCAATCGGCCGATGTGTCTGCCATCATTTCCGATTTTTCCGAATTCGTCAATCGATCCATGATTTTTTCAGCTACAGTAGGAACGATTCGTTTCGCGTGTTTTCCAATCGAGAGTAGGCGGATTGGGATTTTATGGAGGAGAATGTGAAGGCATGCTGAGTGGCCGGTGGTCCAGGAGATCATTGTAGTGCGCTGGAAAAAAGGAGATTTTGGGTTACTGTAGAATTACTGTAAATTTGAATCTTGTGAGTCGTTACTACTGTATGACTAATGTATACCCAAATCTTGTAAAATGTGGTTACTGTAGGGCTATGGTAGATCTAAATTTTGCGAATCGTGGTTACTGTAAGATTACTGTAGATTCTGGATTTTTAAATTGTTGCTACTCTAGGGCTACTGTACATCTCAATTTTCTTTTTTGAAGTTGTAGGATTACGGTAGATCCAAATTTACGATAATACTTTAATTAGGGCAAGGGTACAATTTTGAAAAATCTGAGTTACTGTAGTCGCAGTTACTGTAGCTAGAAAAGGATTACTGTAGGAAAAAAAAATATTCGAAAATCGAAAGGATTACTGTAGATTCGAATTTTGAACTTTTTCATTTCTATAAGATTACGGTAACTGAAAATTCTAGGAAACTCTAAAAATGAAAAAAAAACCGACCGATTATTTTAAATCTAGGGATTACTGTAGCGGGAGCTACTATAGGTAGAGAGGGCTTACTGTAGGGGAAAACATTGAAAATCAA</canonical>
            <polymorphic>AGCTGCTTTCACAATTTTTAGGTGAAAATATTCATTTTTTTTTAGTAAAAAAAGAGCTAAAGCTATGGGAAATTTTCAGAGAAAAAGCGAGAGATCATTGGGAAGAAAAAGCAAAAATTCACAGAAAATTCTGGGGTGACTAGAACATGAGAAAATGCACAAATATGTGAAAAAACTGTCAAAAAACGGCGGTAAAAATTCAAAACATCAACTAATTCTGTCTTCCAGGAAACAGTGAATTCTCAAAAATCCAATCGGCCGATGTGTCTGCCATCATTTCCGATTTTTCCGAATTCGTCAATCGATCCATGATTTTTTCAGCTACAGTAGGAACGATTCGTTTCGCGTGTTTTCCAATCGAGAGTAGGCGGATTGGGATTTTATGGAGGAGAATGTGAAGGCATGCTGAGTGGCCGGTGGTCCAGGAGATCATTGTAGTGCGCTGGAAAAAAGGAGATTTTGGGTTACTGTAGAATTACTGTAAATTTGAATCTTGTGARTCGTTACTACTGTATGACTAATGTATACCCAAATCTTGTAAAATGTGGTTACTGTAGGGCTATGGTAGATCTAAATTTTGCGAATCGTGGTTACTGTAAGATTACTGTAGATTCTGGATTTTTAAATTGTTGCTACTCTAGGGCTACTGTACATCTCAATTTTCTTTTTTGAAGTTGTAGGATTACGGTAGATCCAAATTTACGATAATACTTTAATTAGGGCAAGGGTACAATTTTGAAAAATCTGAGTTACTGTAGTCGCAGTTACTGTAGCTAGAAAAGGATTACTGTAGGAAAAAAAAATATTCGAAAATCGAAAGGATTACTGTAGATTCGAATTTTGAACTTTTTCATTTCTATAAGATTACGGTAACTGAAAATTCTAGGAAACTCTAAAAATGAAAAAAAAACCGACCGATTATTTTAAATCTAGGGATTACTGTAGCGGGAGCTACTATAGGTAGAGAGGGCTTACTGTAGGGGAAAACATTGAAAATCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGCTACAGTAGGAACGAT</pcr_primer_p1>
		<pcr_primer_p2>CCCTACAGTAACCACATTTTACA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGCTACAGTAGGAACGATTCGTTTCGCGTGTTTTCCAATCGAGAGTAGGCGGATTGGGATTTTATGGAGGAGAATGTGAAGGCATGCTGAGTGGCCGGTGGTCCAGGAGATCATTGTAGTGCGCTGGAAAAAAGGAGATTTTGGGTTACTGTAGAATTACTGTAAATTTGAATCTTGTGAGTCGTTACTACTGTATGACTAATGTATACCCAAATCTTGTAAAATGTGGTTACTGTAGGG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGCTACAGTAGGAACGATTCGTTTCGCGTGTTTTCCAATCGAGAGTAGGCGGATTGGGATTTTATGGAGGAGAATGTGAAGGCATGCTGAGTGGCCGGTGGTCCAGGAGATCATTGTAGTGCGCTGGAAAAAAGGAGATTTTGGGTTACTGTAGAATTACTGTAAATTTGAATCTTGTGARTCGTTACTACTGTATGACTAATGTATACCCAAATCTTGTAAAATGTGGTTACTGTAGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17993</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>69692</contig_pos>
        <strand>+</strand>
        <context>GAAGTGCACA[A/G]AATTGATCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCCAATCCAACAGCAAATCAATCATTTTTTGTGGTCCCTGAAGTGCACA</left_flank>
        <right_flank>AATTGATCCAGGTTCAGGCACGATTCTTGATGCTTCTGATCGGATTCGAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGCTCCAAGAATTCTGGGCTCGTGTGCTCCGCAAATCCAAGGAGCCGCGTGGCCAATAAGCCTGGAGCTTTACACCCCGAAAGAGCATTTTTGAGGTCTTCAGAAGCCAGTGAGCCCTGGAAAAGTGCTCCAAGTGCTTGCATAGTCTCTGCAATCGAGGCGTTCAGAGCCAGAAGCTCCCGATGAAGCTTCACTTGATGTTTCTGAGGGGTTTGAGAGATCCAAAGAGACGCAGATTTCAGGCAAGTCCCTAGGATATCAAGGAGGCCTGATAGCTGTGGAGTCTTCGTTGAATCACTGAAATTCCAAATCAATTCCATCACTTTATCCACGATTTTCAACAGTTCCGGCTTGAAAATCACAGCATAGGCTACACGGGGATCCTTCAGAAAAATACATAGAGAATGACAAATCCGGATGCAAAGTCTCATAGAAATCCCGTTTTTAGTCCAATCCAACAGCAAATCAATCATTTTTTGTGGTCCCTGAAGTGCACAAAATTGATCCAGGTTCAGGCACGATTCTTGATGCTTCTGATCGGATTCGACGGCTTGAACGAGGTCGTGGAGCGATTTTTCCACGTTTTCTTGTAGTTTTTCGTCGAATTTCGAACTGCAATATTTGTCGATTGCCATGTTGAACTCTCGGACGAATTTGGTACGATTTCGAGGGGAAGCAAGCGGTCCGGGAAGGGTCTCGGCGATTTGGCTGGAAAAAACACACTAATTCAACAGTAATCATAATTTTTCAAAAATTCGAATCTACAGTAATCCTACAGATGCCACGAGTTTAAATATTCGAGACTACAGTGATCCTACAGTAGTCACAAGTTTAAAAATTTGAAATCTACAGTAATCCTACCGTAATCACGACTTTTTGAAAATTCGAATCTACAGTAATCCTACCGTAATCAAAATCTTGAAAGATCCAAATCTACAGTAATCTTACCGTTATCACGATTCTTAAAAGTTCAAATATACATTAACCCTGCCGTAATC</canonical>
            <polymorphic>CTTGCTCCAAGAATTCTGGGCTCGTGTGCTCCGCAAATCCAAGGAGCCGCGTGGCCAATAAGCCTGGAGCTTTACACCCCGAAAGAGCATTTTTGAGGTCTTCAGAAGCCAGTGAGCCCTGGAAAAGTGCTCCAAGTGCTTGCATAGTCTCTGCAATCGAGGCGTTCAGAGCCAGAAGCTCCCGATGAAGCTTCACTTGATGTTTCTGAGGGGTTTGAGAGATCCAAAGAGACGCAGATTTCAGGCAAGTCCCTAGGATATCAAGGAGGCCTGATAGCTGTGGAGTCTTCGTTGAATCACTGAAATTCCAAATCAATTCCATCACTTTATCCACGATTTTCAACAGTTCCGGCTTGAAAATCACAGCATAGGCTACACGGGGATCCTTCAGAAAAATACATAGAGAATGACAAATCCGGATGCAAAGTCTCATAGAAATCCCGTTTTTAGTCCAATCCAACAGCAAATCAATCATTTTTTGTGGTCCCTGAAGTGCACARAATTGATCCAGGTTCAGGCACGATTCTTGATGCTTCTGATCGGATTCGACGGCTTGAACGAGGTCGTGGAGCGATTTTTCCACGTTTTCTTGTAGTTTTTCGTCGAATTTCGAACTGCAATATTTGTCGATTGCCATGTTGAACTCTCGGACGAATTTGGTACGATTTCGAGGGGAAGCAAGCGGTCCGGGAAGGGTCTCGGCGATTTGGCTGGAAAAAACACACTAATTCAACAGTAATCATAATTTTTCAAAAATTCGAATCTACAGTAATCCTACAGATGCCACGAGTTTAAATATTCGAGACTACAGTGATCCTACAGTAGTCACAAGTTTAAAAATTTGAAATCTACAGTAATCCTACCGTAATCACGACTTTTTGAAAATTCGAATCTACAGTAATCCTACCGTAATCAAAATCTTGAAAGATCCAAATCTACAGTAATCTTACCGTTATCACGATTCTTAAAAGTTCAAATATACATTAACCCTGCCGTAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCACAGCATAGGCTACAC</pcr_primer_p1>
		<pcr_primer_p2>CGACGAAAAACTACAAGAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAATCACAGCATAGGCTACACGGGGATCCTTCAGAAAAATACATAGAGAATGACAAATCCGGATGCAAAGTCTCATAGAAATCCCGTTTTTAGTCCAATCCAACAGCAAATCAATCATTTTTTGTGGTCCCTGAAGTGCACAAAATTGATCCAGGTTCAGGCACGATTCTTGATGCTTCTGATCGGATTCGACGGCTTGAACGAGGTCGTGGAGCGATTTTTCCACGTTTTCTTGTAGTTTTTCGTCG</canonical_amplicon>
		<polymorphic_amplicon>AAAATCACAGCATAGGCTACACGGGGATCCTTCAGAAAAATACATAGAGAATGACAAATCCGGATGCAAAGTCTCATAGAAATCCCGTTTTTAGTCCAATCCAACAGCAAATCAATCATTTTTTGTGGTCCCTGAAGTGCACARAATTGATCCAGGTTCAGGCACGATTCTTGATGCTTCTGATCGGATTCGACGGCTTGAACGAGGTCGTGGAGCGATTTTTCCACGTTTTCTTGTAGTTTTTCGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17994</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>69813</contig_pos>
        <strand>+</strand>
        <context>CGAACTGCAA[A/T]AYTTGTCGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCGATTTTTCCACGTTTTCTTGTAGTTTTTCGTCGAATTTCGAACTGCAA</left_flank>
        <right_flank>ATTTGTCGATTGCCATGTTGAACTCTCGGACGAATTTGGTACGATTTCGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAGTGCTCCAAGTGCTTGCATAGTCTCTGCAATCGAGGCGTTCAGAGCCAGAAGCTCCCGATGAAGCTTCACTTGATGTTTCTGAGGGGTTTGAGAGATCCAAAGAGACGCAGATTTCAGGCAAGTCCCTAGGATATCAAGGAGGCCTGATAGCTGTGGAGTCTTCGTTGAATCACTGAAATTCCAAATCAATTCCATCACTTTATCCACGATTTTCAACAGTTCCGGCTTGAAAATCACAGCATAGGCTACACGGGGATCCTTCAGAAAAATACATAGAGAATGACAAATCCGGATGCAAAGTCTCATAGAAATCCCGTTTTTAGTCCAATCCAACAGCAAATCAATCATTTTTTGTGGTCCCTGAAGTGCACAAAATTGATCCAGGTTCAGGCACGATTCTTGATGCTTCTGATCGGATTCGACGGCTTGAACGAGGTCGTGGAGCGATTTTTCCACGTTTTCTTGTAGTTTTTCGTCGAATTTCGAACTGCAATATTTGTCGATTGCCATGTTGAACTCTCGGACGAATTTGGTACGATTTCGAGGGGAAGCAAGCGGTCCGGGAAGGGTCTCGGCGATTTGGCTGGAAAAAACACACTAATTCAACAGTAATCATAATTTTTCAAAAATTCGAATCTACAGTAATCCTACAGATGCCACGAGTTTAAATATTCGAGACTACAGTGATCCTACAGTAGTCACAAGTTTAAAAATTTGAAATCTACAGTAATCCTACCGTAATCACGACTTTTTGAAAATTCGAATCTACAGTAATCCTACCGTAATCAAAATCTTGAAAGATCCAAATCTACAGTAATCTTACCGTTATCACGATTCTTAAAAGTTCAAATATACATTAACCCTGCCGTAATCACACTTTCAAAATTCAAACCTACAGTAATCCTACAGTAATCACGCTTTTTCATAATTCGAATCTACAGTAACCCTACAGTTGTCACAATTTAAGAAATTTAGAATCTACAGTAACCCTGCC</canonical>
            <polymorphic>GAAAAGTGCTCCAAGTGCTTGCATAGTCTCTGCAATCGAGGCGTTCAGAGCCAGAAGCTCCCGATGAAGCTTCACTTGATGTTTCTGAGGGGTTTGAGAGATCCAAAGAGACGCAGATTTCAGGCAAGTCCCTAGGATATCAAGGAGGCCTGATAGCTGTGGAGTCTTCGTTGAATCACTGAAATTCCAAATCAATTCCATCACTTTATCCACGATTTTCAACAGTTCCGGCTTGAAAATCACAGCATAGGCTACACGGGGATCCTTCAGAAAAATACATAGAGAATGACAAATCCGGATGCAAAGTCTCATAGAAATCCCGTTTTTAGTCCAATCCAACAGCAAATCAATCATTTTTTGTGGTCCCTGAAGTGCACAAAATTGATCCAGGTTCAGGCACGATTCTTGATGCTTCTGATCGGATTCGACGGCTTGAACGAGGTCGTGGAGCGATTTTTCCACGTTTTCTTGTAGTTTTTCGTCGAATTTCGAACTGCAAWATTTGTCGATTGCCATGTTGAACTCTCGGACGAATTTGGTACGATTTCGAGGGGAAGCAAGCGGTCCGGGAAGGGTCTCGGCGATTTGGCTGGAAAAAACACACTAATTCAACAGTAATCATAATTTTTCAAAAATTCGAATCTACAGTAATCCTACAGATGCCACGAGTTTAAATATTCGAGACTACAGTGATCCTACAGTAGTCACAAGTTTAAAAATTTGAAATCTACAGTAATCCTACCGTAATCACGACTTTTTGAAAATTCGAATCTACAGTAATCCTACCGTAATCAAAATCTTGAAAGATCCAAATCTACAGTAATCTTACCGTTATCACGATTCTTAAAAGTTCAAATATACATTAACCCTGCCGTAATCACACTTTCAAAATTCAAACCTACAGTAATCCTACAGTAATCACGCTTTTTCATAATTCGAATCTACAGTAACCCTACAGTTGTCACAATTTAAGAAATTTAGAATCTACAGTAACCCTGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 324 176</canonical_bands>
                <polymorphic_bands>676 324</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATTCTTGATGCTTCTGAT</pcr_primer_p1>
		<pcr_primer_p2>TGATTACTGTTGAATTAGTGTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>222</pcr_amplicon_size>
		<canonical_amplicon>CGATTCTTGATGCTTCTGATCGGATTCGACGGCTTGAACGAGGTCGTGGAGCGATTTTTCCACGTTTTCTTGTAGTTTTTCGTCGAATTTCGAACTGCAATATTTGTCGATTGCCATGTTGAACTCTCGGACGAATTTGGTACGATTTCGAGGGGAAGCAAGCGGTCCGGGAAGGGTCTCGGCGATTTGGCTGGAAAAAACACACTAATTCAACAGTAATCA</canonical_amplicon>
		<polymorphic_amplicon>CGATTCTTGATGCTTCTGATCGGATTCGACGGCTTGAACGAGGTCGTGGAGCGATTTTTCCACGTTTTCTTGTAGTTTTTCGTCGAATTTCGAACTGCAAWATTTGTCGATTGCCATGTTGAACTCTCGGACGAATTTGGTACGATTTCGAGGGGAAGCAAGCGGTCCGGGAAGGGTCTCGGCGATTTGGCTGGAAAAAACACACTAATTCAACAGTAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17995</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>69815</contig_pos>
        <strand>+</strand>
        <context>AACTGCAAWA[C/T]TTGTCGATTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTTTTCCACGTTTTCTTGTAGTTTTTCGTCGAATTTCGAACTGCAATA</left_flank>
        <right_flank>TTGTCGATTGCCATGTTGAACTCTCGGACGAATTTGGTACGATTTCGAGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGTGCTCCAAGTGCTTGCATAGTCTCTGCAATCGAGGCGTTCAGAGCCAGAAGCTCCCGATGAAGCTTCACTTGATGTTTCTGAGGGGTTTGAGAGATCCAAAGAGACGCAGATTTCAGGCAAGTCCCTAGGATATCAAGGAGGCCTGATAGCTGTGGAGTCTTCGTTGAATCACTGAAATTCCAAATCAATTCCATCACTTTATCCACGATTTTCAACAGTTCCGGCTTGAAAATCACAGCATAGGCTACACGGGGATCCTTCAGAAAAATACATAGAGAATGACAAATCCGGATGCAAAGTCTCATAGAAATCCCGTTTTTAGTCCAATCCAACAGCAAATCAATCATTTTTTGTGGTCCCTGAAGTGCACAAAATTGATCCAGGTTCAGGCACGATTCTTGATGCTTCTGATCGGATTCGACGGCTTGAACGAGGTCGTGGAGCGATTTTTCCACGTTTTCTTGTAGTTTTTCGTCGAATTTCGAACTGCAATATTTGTCGATTGCCATGTTGAACTCTCGGACGAATTTGGTACGATTTCGAGGGGAAGCAAGCGGTCCGGGAAGGGTCTCGGCGATTTGGCTGGAAAAAACACACTAATTCAACAGTAATCATAATTTTTCAAAAATTCGAATCTACAGTAATCCTACAGATGCCACGAGTTTAAATATTCGAGACTACAGTGATCCTACAGTAGTCACAAGTTTAAAAATTTGAAATCTACAGTAATCCTACCGTAATCACGACTTTTTGAAAATTCGAATCTACAGTAATCCTACCGTAATCAAAATCTTGAAAGATCCAAATCTACAGTAATCTTACCGTTATCACGATTCTTAAAAGTTCAAATATACATTAACCCTGCCGTAATCACACTTTCAAAATTCAAACCTACAGTAATCCTACAGTAATCACGCTTTTTCATAATTCGAATCTACAGTAACCCTACAGTTGTCACAATTTAAGAAATTTAGAATCTACAGTAACCCTGCCGT</canonical>
            <polymorphic>AAAGTGCTCCAAGTGCTTGCATAGTCTCTGCAATCGAGGCGTTCAGAGCCAGAAGCTCCCGATGAAGCTTCACTTGATGTTTCTGAGGGGTTTGAGAGATCCAAAGAGACGCAGATTTCAGGCAAGTCCCTAGGATATCAAGGAGGCCTGATAGCTGTGGAGTCTTCGTTGAATCACTGAAATTCCAAATCAATTCCATCACTTTATCCACGATTTTCAACAGTTCCGGCTTGAAAATCACAGCATAGGCTACACGGGGATCCTTCAGAAAAATACATAGAGAATGACAAATCCGGATGCAAAGTCTCATAGAAATCCCGTTTTTAGTCCAATCCAACAGCAAATCAATCATTTTTTGTGGTCCCTGAAGTGCACAAAATTGATCCAGGTTCAGGCACGATTCTTGATGCTTCTGATCGGATTCGACGGCTTGAACGAGGTCGTGGAGCGATTTTTCCACGTTTTCTTGTAGTTTTTCGTCGAATTTCGAACTGCAATAYTTGTCGATTGCCATGTTGAACTCTCGGACGAATTTGGTACGATTTCGAGGGGAAGCAAGCGGTCCGGGAAGGGTCTCGGCGATTTGGCTGGAAAAAACACACTAATTCAACAGTAATCATAATTTTTCAAAAATTCGAATCTACAGTAATCCTACAGATGCCACGAGTTTAAATATTCGAGACTACAGTGATCCTACAGTAGTCACAAGTTTAAAAATTTGAAATCTACAGTAATCCTACCGTAATCACGACTTTTTGAAAATTCGAATCTACAGTAATCCTACCGTAATCAAAATCTTGAAAGATCCAAATCTACAGTAATCTTACCGTTATCACGATTCTTAAAAGTTCAAATATACATTAACCCTGCCGTAATCACACTTTCAAAATTCAAACCTACAGTAATCCTACAGTAATCACGCTTTTTCATAATTCGAATCTACAGTAACCCTACAGTTGTCACAATTTAAGAAATTTAGAATCTACAGTAACCCTGCCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>498 326 176</canonical_bands>
                <polymorphic_bands>674 326</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTTTCCACGTTTTCTTGT</pcr_primer_p1>
		<pcr_primer_p2>AATATTTAAACTCGTGGCATCT</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>GATTTTTCCACGTTTTCTTGTAGTTTTTCGTCGAATTTCGAACTGCAATATTTGTCGATTGCCATGTTGAACTCTCGGACGAATTTGGTACGATTTCGAGGGGAAGCAAGCGGTCCGGGAAGGGTCTCGGCGATTTGGCTGGAAAAAACACACTAATTCAACAGTAATCATAATTTTTCAAAAATTCGAATCTACAGTAATCCTACAGATGCCACGAGTTTAAATATT</canonical_amplicon>
		<polymorphic_amplicon>GATTTTTCCACGTTTTCTTGTAGTTTTTCGTCGAATTTCGAACTGCAATAYTTGTCGATTGCCATGTTGAACTCTCGGACGAATTTGGTACGATTTCGAGGGGAAGCAAGCGGTCCGGGAAGGGTCTCGGCGATTTGGCTGGAAAAAACACACTAATTCAACAGTAATCATAATTTTTCAAAAATTCGAATCTACAGTAATCCTACAGATGCCACGAGTTTAAATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17996</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>73933</contig_pos>
        <strand></strand>
        <context>TTAGAAGAAG[G/A]GATTTGTGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGGCAGAGGATGGGGAGGGTGTCTCCTAGAAACATCAATTTTAGAAGAAG</left_flank>
        <right_flank>GATTTGTGTGCCTGTGTGTCCAGATGTCCACCAGACACATTAGATTAATA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACGTCGCCACCGATTCCTGCTCCATGAGCTCCGACCAAGCCGAATTCCGAATCTCCTCGAAGACTTTGAAGAAGTTCTCCATCTCCTCCTTCTGCTTTCTCTGCGTCTTCCTCTTCTGCTCTCTCTCCAAACTCGCCGCTTCCATTTCAACCTGTCTCTCGAGTTCCGCATCTATTTCCATGGATTCCGCTTGTTTTATTTCCAAATTCAAACTGTTTTCTTCCAGTGCCAATGACTCTTCCTCCTCTGTCATCTCTCTCCATTCATCATCTTTTTCCAGCTCTTCTGGAAGGGCCACATAGCCAAAAAGGGATCCATTTCGAGATTGGGTCGGTTGAGAAGCTGATGAAGAAGGCGTCGGGTCTGCTGGAACGACGTCTTCTGAATTTTCGGACGATGGGGCGTTGGGAGGATTCGATTCTTCGTTTATTGATTGAAGTTCGGCATTGGCAGAGGATGGGGAGGGTGTCTCCTAGAAACATCAATTTTAGAAGAAGGGATTTGTGTGCCTGTGTGTCCAGATGTCCACCAGACACATTAGATTAATATCAGGCTATTCCAAGGTCATTCACCATGGTGGCCTAGAAAATTCACCTTGCGAAAGTTAGGCCATCATTGTAAATGGGCTAAAAGACATACTAGGTGAATACCAGGCTATTCCCGGATCATTTACCATGATTGCCTGGAAAACTCAACTCGTAAAAGTTAGGCCACCATGTTGAAATGACCTAGAAAACGCAAAAGGTTAATATCAGCCCATTTCTAGATTCTTCGGCATGGTGGCCGAGAAAATACAACTTGCGAAAGTTAGGCCACCATGTCAAAATGACCTAGAAGACAGACTAGGTGAATAACAGGTTATTTCCAGGCCACTCTAACTGTTAGAATCTAACATGGTGGCCTAGGAAACACAGCTTGCAAAAAGGTTTCATTTTGCACCATTTCTAGGCCATTTACCATGGTGGCCTAGAAAACTCGACATAAACGTAAGTTTCACG</canonical>
            <polymorphic>GTACGTCGCCACCGATTCCTGCTCCATGAGCTCCGACCAAGCCGAATTCCGAATCTCCTCGAAGACTTTGAAGAAGTTCTCCATCTCCTCCTTCTGCTTTCTCTGCGTCTTCCTCTTCTGCTCTCTCTCCAAACTCGCCGCTTCCATTTCAACCTGTCTCTCGAGTTCCGCATCTATTTCCATGGATTCCGCTTGTTTTATTTCCAAATTCAAACTGTTTTCTTCCAGTGCCAATGACTCTTCCTCCTCTGTCATCTCTCTCCATTCATCATCTTTTTCCAGCTCTTCTGGAAGGGCCACATAGCCAAAAAGGGATCCATTTCGAGATTGGGTCGGTTGAGAAGCTGATGAAGAAGGCGTCGGGTCTGCTGGAACGACGTCTTCTGAATTTTCGGACGATGGGGCGTTGGGAGGATTCGATTCTTCGTTTATTGATTGAAGTTCGGCATTGGCAGAGGATGGGGAGGGTGTCTCCTAGAAACATCAATTTTAGAAGAAGRGATTTGTGTGCCTGTGTGTCCAGATGTCCACCAGACACATTAGATTAATATCAGGCTATTCCAAGGTCATTCACCATGGTGGCCTAGAAAATTCACCTTGCGAAAGTTAGGCCATCATTGTAAATGGGCTAAAAGACATACTAGGTGAATACCAGGCTATTCCCGGATCATTTACCATGATTGCCTGGAAAACTCAACTCGTAAAAGTTAGGCCACCATGTTGAAATGACCTAGAAAACGCAAAAGGTTAATATCAGCCCATTTCTAGATTCTTCGGCATGGTGGCCGAGAAAATACAACTTGCGAAAGTTAGGCCACCATGTCAAAATGACCTAGAAGACAGACTAGGTGAATAACAGGTTATTTCCAGGCCACTCTAACTGTTAGAATCTAACATGGTGGCCTAGGAAACACAGCTTGCAAAAAGGTTTCATTTTGCACCATTTCTAGGCCATTTACCATGGTGGCCTAGAAAACTCGACATAAACGTAAGTTTCACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTCGTTTATTGATTGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>AGAAAACCCAGCAAAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>604</pcr_amplicon_size>
		<canonical_amplicon>TTCTTCGTTTATTGATTGAAGTTCGGCATTGGCAGAGGATGGGGAGGGTGTCTCCTAGAAACATCAATTTTAGAAGAAGGGATTTGTGTGCCTGTGTGT</canonical_amplicon>
		<polymorphic_amplicon>TTCTTCGTTTATTGATTGAAGTTCGGCATTGGCAGAGGATGGGGAGGGTGTCTCCTAGAAACATCAATTTTAGAAGAAGRGATTTGTGTGCCTGTGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17997</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140958</contig_pos>
        <strand></strand>
        <context>ttttttcgaa[G/A]TTCCTCACCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAA</left_flank>
        <right_flank>TTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAATTCGATTTTCTTCTTCTATTTTCATCTTCCCTGAATTGTGAACAATCGGCTCCTGCTCCTCCCTTCTCGCTACAATCGTCTCCAGCTTCTCTTTCGACGAATTCATACATCGCTCAAAAATCCTCTCGAAATTCGGTCGAATTCCTTCCTCAACCACCATTCCACCCCT</canonical>
            <polymorphic>GTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAARTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAATTCGATTTTCTTCTTCTATTTTCATCTTCCCTGAATTGTGAACAATCGGCTCCTGCTCCTCCCTTCTCGCTACAATCGTCTCCAGCTTCTCTTTCGACGAATTCATACATCGCTCAAAAATCCTCTCGAAATTCGGTCGAATTCCTTCCTCAACCACCATTCCACCCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTACTGTAGTTGTTTCATCAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGCGGTAATTCAAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>445</pcr_amplicon_size>
		<canonical_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTT</canonical_amplicon>
		<polymorphic_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAARTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17998</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>141063</contig_pos>
        <strand></strand>
        <context>CTATCCATTG[C/T]TCATCCGACG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTG</left_flank>
        <right_flank>TCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAAC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAATTCGATTTTCTTCTTCTATTTTCATCTTCCCTGAATTGTGAACAATCGGCTCCTGCTCCTCCCTTCTCGCTACAATCGTCTCCAGCTTCTCTTTCGACGAATTCATACATCGCTCAAAAATCCTCTCGAAATTCGGTCGAATTCCTTCCTCAACCACCATTCCACCCCTCCATCCTTCTATGCAAACTCGCTCTACCGTACTCAACGACATTTCGCATCGCGGACAAATCGAATTCAAATCTTCGGGTTCTTCAGACAATGCCACGTGGCGTAG</canonical>
            <polymorphic>TTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGYTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAATTCGATTTTCTTCTTCTATTTTCATCTTCCCTGAATTGTGAACAATCGGCTCCTGCTCCTCCCTTCTCGCTACAATCGTCTCCAGCTTCTCTTTCGACGAATTCATACATCGCTCAAAAATCCTCTCGAAATTCGGTCGAATTCCTTCCTCAACCACCATTCCACCCCTCCATCCTTCTATGCAAACTCGCTCTACCGTACTCAACGACATTTCGCATCGCGGACAAATCGAATTCAAATCTTCGGGTTCTTCAGACAATGCCACGTGGCGTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCCTTAAAAACCGTCTCTCT</pcr_primer_p1>
		<pcr_primer_p2>TCTAATCATCAAATCTAAGGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGA</canonical_amplicon>
		<polymorphic_amplicon>AGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGYTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb17999</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>141106</contig_pos>
        <strand></strand>
        <context>TTTCCCGAGA[G/A]TGAAAACTGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGA</left_flank>
        <right_flank>TGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAG</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAATTCGATTTTCTTCTTCTATTTTCATCTTCCCTGAATTGTGAACAATCGGCTCCTGCTCCTCCCTTCTCGCTACAATCGTCTCCAGCTTCTCTTTCGACGAATTCATACATCGCTCAAAAATCCTCTCGAAATTCGGTCGAATTCCTTCCTCAACCACCATTCCACCCCTCCATCCTTCTATGCAAACTCGCTCTACCGTACTCAACGACATTTCGCATCGCGGACAAATCGAATTCAAATCTTCGGGTTCTTCAGACAATGCCACGTGGCGTAGAAGACGTTCCCAGTCTCCAGAAGTCTGTGGGATGGATCCATGT</canonical>
            <polymorphic>AAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGARTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAATTCGATTTTCTTCTTCTATTTTCATCTTCCCTGAATTGTGAACAATCGGCTCCTGCTCCTCCCTTCTCGCTACAATCGTCTCCAGCTTCTCTTTCGACGAATTCATACATCGCTCAAAAATCCTCTCGAAATTCGGTCGAATTCCTTCCTCAACCACCATTCCACCCCTCCATCCTTCTATGCAAACTCGCTCTACCGTACTCAACGACATTTCGCATCGCGGACAAATCGAATTCAAATCTTCGGGTTCTTCAGACAATGCCACGTGGCGTAGAAGACGTTCCCAGTCTCCAGAAGTCTGTGGGATGGATCCATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>267 221 116 100 92 82 48 35 14 10 8 4 3</canonical_bands>
                <polymorphic_bands>303 267 116 100 92 48 35 14 10 8 4 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTCCTTAAAAACCGTCTCTCT</pcr_primer_p1>
		<pcr_primer_p2>TCTAATCATCAAATCTAAGGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGA</canonical_amplicon>
		<polymorphic_amplicon>AGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGARTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18000</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>142712</contig_pos>
        <strand>+</strand>
        <context>TTTCTCAAAA[G/T]GTTTCAAGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GACCTGAACATGGGAATGGTTGGCAAAGATTACTGTAGTTTTTCTCAAAA</left_flank>
        <right_flank>GTTTCAAGGGATTACTGTAGTTTTTTTTTCATGATTTGAAAGGACTGGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCAGATGACGTCATTGCTAGTGCTTTCTTATTATTCCAAATCGTCGATAAATCAACGGGAACTGCTAACGCTAGCTCTGCCAACGCCTTCGCCGCATTTCCGATGGTTACTGTAGGCGTGAATCGAATCTCGTCTCTCTTGACACCTTCTAGTTGGAGCAGTGTTCGAAGCGATTCTTTTTCCACTAGTTTTTCAGAATTCTCTTCTAGAATCTGCCGTGCTCTATGAAGGATGTCTTCCTCCACGACGTCTGGCGTCCCATTTTTTCTCCAGAATTCTTGACGAAGCTCTAGGCTAGATGGTTCGGATGCTCGTTTTTCAAACGGTTGGGCGGTTGGGATGGGGGATTCTGGAGTGCACGGTGAGCTTCTGGATCTTTCTCGAAGGGCTTGGGGTGTGGAAAATGAGAAGTCGTCGTCGTAGCCACTGCATTGGACGGTGTGGAGGACCTGAACATGGGAATGGTTGGCAAAGATTACTGTAGTTTTTCTCAAAAGGTTTCAAGGGATTACTGTAGTTTTTTTTTCATGATTTGAAAGGACTGGGAATATGAAATAAGGTTCCACTCGGTCGGGAAACGCAGCCGGCCGACGGACCACCGACCGAGCTGACCTGTTTTTCAAAATTTTGAAATGCAGAATTTTCAGAATTTCAGAAATTCTCACCCTATGCACTCCACTCGGCAGTCTTTTAGACTTTTCTTCTGCTAATTTTTCTCCGCTTCTCTGCGTCTCTTCTCTCTCCTTCTCCCTGTTTTTGGCTCCTTTCAACGATTCTCTCCTCTCCAACTCTTCCATATTATCATACATCGATTGGCTGGCTTTCCGATCGTCTAGAATCTTCTGAAGCAGTTGCTGAAGACGTTCCGTTTCCTTTTTCCGCGACATCGTCAAAAGTCCTTCTATTGTTTTTGATATTATTGGAGATGGGAATGAGAAGTGTGGAGAGCAGAAGAGAATTGTTTGGGCACTCTGAAAGAAGGATTACTGTAGTTTTT</canonical>
            <polymorphic>TTTTCAGATGACGTCATTGCTAGTGCTTTCTTATTATTCCAAATCGTCGATAAATCAACGGGAACTGCTAACGCTAGCTCTGCCAACGCCTTCGCCGCATTTCCGATGGTTACTGTAGGCGTGAATCGAATCTCGTCTCTCTTGACACCTTCTAGTTGGAGCAGTGTTCGAAGCGATTCTTTTTCCACTAGTTTTTCAGAATTCTCTTCTAGAATCTGCCGTGCTCTATGAAGGATGTCTTCCTCCACGACGTCTGGCGTCCCATTTTTTCTCCAGAATTCTTGACGAAGCTCTAGGCTAGATGGTTCGGATGCTCGTTTTTCAAACGGTTGGGCGGTTGGGATGGGGGATTCTGGAGTGCACGGTGAGCTTCTGGATCTTTCTCGAAGGGCTTGGGGTGTGGAAAATGAGAAGTCGTCGTCGTAGCCACTGCATTGGACGGTGTGGAGGACCTGAACATGGGAATGGTTGGCAAAGATTACTGTAGTTTTTCTCAAAAKGTTTCAAGGGATTACTGTAGTTTTTTTTTCATGATTTGAAAGGACTGGGAATATGAAATAAGGTTCCACTCGGTCGGGAAACGCAGCCGGCCGACGGACCACCGACCGAGCTGACCTGTTTTTCAAAATTTTGAAATGCAGAATTTTCAGAATTTCAGAAATTCTCACCCTATGCACTCCACTCGGCAGTCTTTTAGACTTTTCTTCTGCTAATTTTTCTCCGCTTCTCTGCGTCTCTTCTCTCTCCTTCTCCCTGTTTTTGGCTCCTTTCAACGATTCTCTCCTCTCCAACTCTTCCATATTATCATACATCGATTGGCTGGCTTTCCGATCGTCTAGAATCTTCTGAAGCAGTTGCTGAAGACGTTCCGTTTCCTTTTTCCGCGACATCGTCAAAAGTCCTTCTATTGTTTTTGATATTATTGGAGATGGGAATGAGAAGTGTGGAGAGCAGAAGAGAATTGTTTGGGCACTCTGAAAGAAGGATTACTGTAGTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGGAAAATGAGAAGTCGT</pcr_primer_p1>
		<pcr_primer_p2>AAAATTTTGAAAAACAGGTCAG</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>TGTGGAAAATGAGAAGTCGTCGTCGTAGCCACTGCATTGGACGGTGTGGAGGACCTGAACATGGGAATGGTTGGCAAAGATTACTGTAGTTTTTCTCAAAAGGTTTCAAGGGATTACTGTAGTTTTTTTTTCATGATTTGAAAGGACTGGGAATATGAAATAAGGTTCCACTCGGTCGGGAAACGCAGCCGGCCGACGGACCACCGACCGAGCTGACCTGTTTTTCAAAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TGTGGAAAATGAGAAGTCGTCGTCGTAGCCACTGCATTGGACGGTGTGGAGGACCTGAACATGGGAATGGTTGGCAAAGATTACTGTAGTTTTTCTCAAAAKGTTTCAAGGGATTACTGTAGTTTTTTTTTCATGATTTGAAAGGACTGGGAATATGAAATAAGGTTCCACTCGGTCGGGAAACGCAGCCGGCCGACGGACCACCGACCGAGCTGACCTGTTTTTCAAAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18001</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>142557</contig_pos>
        <strand>+</strand>
        <context>CGGTTGGGAT[C/G]GGGGATTCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGGCTAGATGGTTCGGATGCTCGTTTTTCAAACGGTTGGGCGGTTGGGAT</left_flank>
        <right_flank>GGGGATTCTGGAGTGCACGGTGAGCTTCTGGATCTTTCTCGAAGGGCTTG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACGTCATCATTTGGTGATCTCGGGGATACTGTAGCCACCGGTTTCTCTTTTTTCACCGCTGGACGGATTCCCGGGCGAACCACTTTGACGATTGTCGGTTTTTTGGTGCTAGTAGACGTGGATTTTTCAGATTTCTCAGATTTTTCGGAAGACTTTTCAGATGACGTCATTGCTAGTGCTTTCTTATTATTCCAAATCGTCGATAAATCAACGGGAACTGCTAACGCTAGCTCTGCCAACGCCTTCGCCGCATTTCCGATGGTTACTGTAGGCGTGAATCGAATCTCGTCTCTCTTGACACCTTCTAGTTGGAGCAGTGTTCGAAGCGATTCTTTTTCCACTAGTTTTTCAGAATTCTCTTCTAGAATCTGCCGTGCTCTATGAAGGATGTCTTCCTCCACGACGTCTGGCGTCCCATTTTTTCTCCAGAATTCTTGACGAAGCTCTAGGCTAGATGGTTCGGATGCTCGTTTTTCAAACGGTTGGGCGGTTGGGATGGGGGATTCTGGAGTGCACGGTGAGCTTCTGGATCTTTCTCGAAGGGCTTGGGGTGTGGAAAATGAGAAGTCGTCGTCGTAGCCACTGCATTGGACGGTGTGGAGGACCTGAACATGGGAATGGTTGGCAAAGATTACTGTAGTTTTTCTCAAAAGGTTTCAAGGGATTACTGTAGTTTTTTTTTCATGATTTGAAAGGACTGGGAATATGAAATAAGGTTCCACTCGGTCGGGAAACGCAGCCGGCCGACGGACCACCGACCGAGCTGACCTGTTTTTCAAAATTTTGAAATGCAGAATTTTCAGAATTTCAGAAATTCTCACCCTATGCACTCCACTCGGCAGTCTTTTAGACTTTTCTTCTGCTAATTTTTCTCCGCTTCTCTGCGTCTCTTCTCTCTCCTTCTCCCTGTTTTTGGCTCCTTTCAACGATTCTCTCCTCTCCAACTCTTCCATATTATCATACATCGATTGGCTGGCTTTCCGATCGTCTAGAATCTT</canonical>
            <polymorphic>TGACGTCATCATTTGGTGATCTCGGGGATACTGTAGCCACCGGTTTCTCTTTTTTCACCGCTGGACGGATTCCCGGGCGAACCACTTTGACGATTGTCGGTTTTTTGGTGCTAGTAGACGTGGATTTTTCAGATTTCTCAGATTTTTCGGAAGACTTTTCAGATGACGTCATTGCTAGTGCTTTCTTATTATTCCAAATCGTCGATAAATCAACGGGAACTGCTAACGCTAGCTCTGCCAACGCCTTCGCCGCATTTCCGATGGTTACTGTAGGCGTGAATCGAATCTCGTCTCTCTTGACACCTTCTAGTTGGAGCAGTGTTCGAAGCGATTCTTTTTCCACTAGTTTTTCAGAATTCTCTTCTAGAATCTGCCGTGCTCTATGAAGGATGTCTTCCTCCACGACGTCTGGCGTCCCATTTTTTCTCCAGAATTCTTGACGAAGCTCTAGGCTAGATGGTTCGGATGCTCGTTTTTCAAACGGTTGGGCGGTTGGGATSGGGGATTCTGGAGTGCACGGTGAGCTTCTGGATCTTTCTCGAAGGGCTTGGGGTGTGGAAAATGAGAAGTCGTCGTCGTAGCCACTGCATTGGACGGTGTGGAGGACCTGAACATGGGAATGGTTGGCAAAGATTACTGTAGTTTTTCTCAAAAGGTTTCAAGGGATTACTGTAGTTTTTTTTTCATGATTTGAAAGGACTGGGAATATGAAATAAGGTTCCACTCGGTCGGGAAACGCAGCCGGCCGACGGACCACCGACCGAGCTGACCTGTTTTTCAAAATTTTGAAATGCAGAATTTTCAGAATTTCAGAAATTCTCACCCTATGCACTCCACTCGGCAGTCTTTTAGACTTTTCTTCTGCTAATTTTTCTCCGCTTCTCTGCGTCTCTTCTCTCTCCTTCTCCCTGTTTTTGGCTCCTTTCAACGATTCTCTCCTCTCCAACTCTTCCATATTATCATACATCGATTGGCTGGCTTTCCGATCGTCTAGAATCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTTCCACTAGTTTTTCAGA</pcr_primer_p1>
		<pcr_primer_p2>CTACGACGACGACTTCTCAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTTCCACTAGTTTTTCAGAATTCTCTTCTAGAATCTGCCGTGCTCTATGAAGGATGTCTTCCTCCACGACGTCTGGCGTCCCATTTTTTCTCCAGAATTCTTGACGAAGCTCTAGGCTAGATGGTTCGGATGCTCGTTTTTCAAACGGTTGGGCGGTTGGGATGGGGGATTCTGGAGTGCACGGTGAGCTTCTGGATCTTTCTCGAAGGGCTTGGGGTGTGGAAAATGAGAAGTCGTCGTCGTAG</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTTCCACTAGTTTTTCAGAATTCTCTTCTAGAATCTGCCGTGCTCTATGAAGGATGTCTTCCTCCACGACGTCTGGCGTCCCATTTTTTCTCCAGAATTCTTGACGAAGCTCTAGGCTAGATGGTTCGGATGCTCGTTTTTCAAACGGTTGGGCGGTTGGGATSGGGGATTCTGGAGTGCACGGTGAGCTTCTGGATCTTTCTCGAAGGGCTTGGGGTGTGGAAAATGAGAAGTCGTCGTCGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18002</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>167600</contig_pos>
        <strand>+</strand>
        <context>AACTTAATTC[C/T]AATTTCCAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGCCGCTAAAATGGGCCCCAGCGGGGCCTGATCAAACGAAACTTAATTC</left_flank>
        <right_flank>AATTTCCAGCTGGAAACAACGCATTCGAACAAATGTTTGATGGGAAATCC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATCAACAAAATCGGATATTTCTGAGCCGAGTTATGCGTCTTTAAACTCTTTGAGAGAGACACAGAGAAACGAGAGCACACTCGTTTCTCTGCGTCTCTCCCAAACTTCAAAAGCGTGTAACTCGCTTCGATGGAAAGCTAGAACTATGAAAATTACATAGAATTATTGGGAATTTTAAGAGCTTTCAGACGGCATACAGTACTTGAAAAATTGAAAATATCTTTTTTTGAAAATTATAAAAATCATTTTCAGCCATAACTTTCCTGAAAATCGGTAAATTTTCATGATTTTTGGTGCAATTGCGGTTATTGTTGGCTTGTAACTTTGCTAATGTACAAGATACAGTATTTCAAATAGTATCAATTCGTATTCCTGGTCGAGTTCTACCGTACCTGACTTTGATGGTCTAAAAATTGCAATCCTAAAAGGAGATAGGACAGCATCAAGGGCCGCTAAAATGGGCCCCAGCGGGGCCTGATCAAACGAAACTTAATTCTAATTTCCAGCTGGAAACAACGCATTCGAACAAATGTTTGATGGGAAATCCGCCCCTATCAACCTCTCTGGACCCGATTCTCTGATTCTTCCTGGCCCGAATCGATCGATTTTCCCATCCACCCCATCGGATCTAGACGTTCTTCCATGGGAGGAAAACGTGATTTGGGATGCGGACAACATGGCTCAAGCACTTGAACCCATAGACTTCCTTGTTGATTTCCAAGACGATCCACTGATCTACGGGATGCCAGAAGATCGTCGAGACGAGGATCATCATCATCATCGTCAAGACAGTCACAGAAAAGATGGATACACGAAGAAATCGAAAATGATTCTGGGACAAGTACAACAGCGGCAGAAACAAGAGGAAGATGAACAAATGGAGAGTACGATGGGACAATTCACGGATAACGATCCCTTCAATTTGTCCAACGACGACTACTACGTTCCGAAAGCCACGTCGAAGACGTTGTCGACGAATTCGCTTCTGATTCAACAC</canonical>
            <polymorphic>AAAATCAACAAAATCGGATATTTCTGAGCCGAGTTATGCGTCTTTAAACTCTTTGAGAGAGACACAGAGAAACGAGAGCACACTCGTTTCTCTGCGTCTCTCCCAAACTTCAAAAGCGTGTAACTCGCTTCGATGGAAAGCTAGAACTATGAAAATTACATAGAATTATTGGGAATTTTAAGAGCTTTCAGACGGCATACAGTACTTGAAAAATTGAAAATATCTTTTTTTGAAAATTATAAAAATCATTTTCAGCCATAACTTTCCTGAAAATCGGTAAATTTTCATGATTTTTGGTGCAATTGCGGTTATTGTTGGCTTGTAACTTTGCTAATGTACAAGATACAGTATTTCAAATAGTATCAATTCGTATTCCTGGTCGAGTTCTACCGTACCTGACTTTGATGGTCTAAAAATTGCAATCCTAAAAGGAGATAGGACAGCATCAAGGGCCGCTAAAATGGGCCCCAGCGGGGCCTGATCAAACGAAACTTAATTCYAATTTCCAGCTGGAAACAACGCATTCGAACAAATGTTTGATGGGAAATCCGCCCCTATCAACCTCTCTGGACCCGATTCTCTGATTCTTCCTGGCCCGAATCGATCGATTTTCCCATCCACCCCATCGGATCTAGACGTTCTTCCATGGGAGGAAAACGTGATTTGGGATGCGGACAACATGGCTCAAGCACTTGAACCCATAGACTTCCTTGTTGATTTCCAAGACGATCCACTGATCTACGGGATGCCAGAAGATCGTCGAGACGAGGATCATCATCATCATCGTCAAGACAGTCACAGAAAAGATGGATACACGAAGAAATCGAAAATGATTCTGGGACAAGTACAACAGCGGCAGAAACAAGAGGAAGATGAACAAATGGAGAGTACGATGGGACAATTCACGGATAACGATCCCTTCAATTTGTCCAACGACGACTACTACGTTCCGAAAGCCACGTCGAAGACGTTGTCGACGAATTCGCTTCTGATTCAACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCCTAAAAGGAGATAGGACAG</pcr_primer_p1>
		<pcr_primer_p2>CATGGAAGAACGTCTAGATCC</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>AATCCTAAAAGGAGATAGGACAGCATCAAGGGCCGCTAAAATGGGCCCCAGCGGGGCCTGATCAAACGAAACTTAATTCTAATTTCCAGCTGGAAACAACGCATTCGAACAAATGTTTGATGGGAAATCCGCCCCTATCAACCTCTCTGGACCCGATTCTCTGATTCTTCCTGGCCCGAATCGATCGATTTTCCCATCCACCCCATCGGATCTAGACGTTCTTCCATG</canonical_amplicon>
		<polymorphic_amplicon>AATCCTAAAAGGAGATAGGACAGCATCAAGGGCCGCTAAAATGGGCCCCAGCGGGGCCTGATCAAACGAAACTTAATTCYAATTTCCAGCTGGAAACAACGCATTCGAACAAATGTTTGATGGGAAATCCGCCCCTATCAACCTCTCTGGACCCGATTCTCTGATTCTTCCTGGCCCGAATCGATCGATTTTCCCATCCACCCCATCGGATCTAGACGTTCTTCCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18003</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>177368</contig_pos>
        <strand></strand>
        <context>TTTAACAACG[G/A]AACATCGGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTATGCTCATTTTAAGACTCTGAACACGCACAATTCAAGTTTAACAACG</left_flank>
        <right_flank>AACATCGGAAAAAGAATACCGTAACCAGGTAACTGGAGAACCGAGAAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCACATTCTCAGAAAATGACCCAGAAGGGAATAAATCATAGAAATACTTAGAAAAATCATTTAAAAAAAATAGGCCTCCACAATCAGAAGGTGGCCAAGAAGAAGAAGAAATGACTAAAAAGTGTCTCGTTAGGCACACAAGGTGCCAGAGATTTGGAAGCCCAGACGTCCTTGTTACATTTTTCTGCCTTTGTTTAACTTTTCTGCAAACAAGAACACTAACCAGGTAGAAGAAGAACAAAGATACATTCAAAAAATTGAAAAAAGTGTAATACTGGCATAACTTTCTTAGTTTTCGCCCAGTTTTAATGAAAGTTATATTTTTGAGTTTCTCTTGTTAAGAGCTTCAAAATGAGTATAAACATGGCCTACTTTCTCAAAATTTCGAATTTCTTGTGGTCCATGCTCCTTTAAACTCAAAAATCATTTTTCACTAAACCTAGGAACGATTATGCTCATTTTAAGACTCTGAACACGCACAATTCAAGTTTAACAACGGAACATCGGAAAAAGAATACCGTAACCAGGTAACTGGAGAACCGAGAAATTATTGAATATCAGGAAAAGTGCCCTAAAATTGTACAAAGATGTTTCAGAGAACGTGATGTACAAATTCAAAATCAACACAATGCGAGCTTCAAAATGATTATAAACATGACCTACTTCCTTAAAGTTTCAAATTTCTTGTGGTCCATGCGCCTTTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAACGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATCGAGAAAAACGCATCGAAAATTCGCTGAAAGCCCTTAGGGACGAGGTTTTTTCTAGGCCGCCCGGTGAGTTAAAAGCGCGCNNNNNNNNNNTACTCACCACGGCGGCCTAGAAAAAACCTCGTCCCTAAGGGCTTTCAGCGTATTTTTCGATGCGTTTTTCTCGATGAAGGCATTTTTTTTGAATTTTTTCTTTA</canonical>
            <polymorphic>CTCACATTCTCAGAAAATGACCCAGAAGGGAATAAATCATAGAAATACTTAGAAAAATCATTTAAAAAAAATAGGCCTCCACAATCAGAAGGTGGCCAAGAAGAAGAAGAAATGACTAAAAAGTGTCTCGTTAGGCACACAAGGTGCCAGAGATTTGGAAGCCCAGACGTCCTTGTTACATTTTTCTGCCTTTGTTTAACTTTTCTGCAAACAAGAACACTAACCAGGTAGAAGAAGAACAAAGATACATTCAAAAAATTGAAAAAAGTGTAATACTGGCATAACTTTCTTAGTTTTCGCCCAGTTTTAATGAAAGTTATATTTTTGAGTTTCTCTTGTTAAGAGCTTCAAAATGAGTATAAACATGGCCTACTTTCTCAAAATTTCGAATTTCTTGTGGTCCATGCTCCTTTAAACTCAAAAATCATTTTTCACTAAACCTAGGAACGATTATGCTCATTTTAAGACTCTGAACACGCACAATTCAAGTTTAACAACGRAACATCGGAAAAAGAATACCGTAACCAGGTAACTGGAGAACCGAGAAATTATTGAATATCAGGAAAAGTGCCCTAAAATTGTACAAAGATGTTTCAGAGAACGTGATGTACAAATTCAAAATCAACACAATGCGAGCTTCAAAATGATTATAAACATGACCTACTTCCTTAAAGTTTCAAATTTCTTGTGGTCCATGCGCCTTTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAACGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATCGAGAAAAACGCATCGAAAATTCGCTGAAAGCCCTTAGGGACGAGGTTTTTTCTAGGCCGCCCGGTGAGTTAAAAGCGCGCNNNNNNNNNNTACTCACCACGGCGGCCTAGAAAAAACCTCGTCCCTAAGGGCTTTCAGCGTATTTTTCGATGCGTTTTTCTCGATGAAGGCATTTTTTTTGAATTTTTTCTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGGTAGAAGAAGAACAAAGAT</pcr_primer_p1>
		<pcr_primer_p2>AATAATTTCTCGGTTCTCCAGT</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>CCAGGTAGAAGAAGAACAAAGATACATTCAAAAAATTGAAAAAAGTGTAATACTGGCATAACTTTCTTAGTTTTCGCCCAGTTTTAATGAAAGTTATATTTTTGAGTTTCTCTTGTTAAGAGCTTCAAAATGAGTATAAACATGGCCTACTTTCTCAAAATTTCGAATTTCTTGTGGTCCATGCTCCTTTAAACTCAAAAATCATTTTTCACTAAACCTAGGAACGATTATGCTCATTTTAAGACTCTGAACACGCACAATTCAAGTTTAACAACGGAACATCGGAAAAAGAATACCGTAACCAGGTAACTGGAGAACCGAGAAATTATT</canonical_amplicon>
		<polymorphic_amplicon>CCAGGTAGAAGAAGAACAAAGATACATTCAAAAAATTGAAAAAAGTGTAATACTGGCATAACTTTCTTAGTTTTCGCCCAGTTTTAATGAAAGTTATATTTTTGAGTTTCTCTTGTTAAGAGCTTCAAAATGAGTATAAACATGGCCTACTTTCTCAAAATTTCGAATTTCTTGTGGTCCATGCTCCTTTAAACTCAAAAATCATTTTTCACTAAACCTAGGAACGATTATGCTCATTTTAAGACTCTGAACACGCACAATTCAAGTTTAACAACGRAACATCGGAAAAAGAATACCGTAACCAGGTAACTGGAGAACCGAGAAATTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18004</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>204416</contig_pos>
        <strand></strand>
        <context>GGATTTTTGG[C/T]GTCTATTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCAAAAATTTTCCCAAAATTTCCATATTCATACATTAATGGATTTTTGG</left_flank>
        <right_flank>GTCTATTTTCTACATATACACTTTTCGTTTGGCTACACTGTTTTACACTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACAGGATCTTTGGACTTTTGTAGGAAAATCGCCGAAAATCGGGGGTTACGGTAGTTTTCGTTTTGAGCCTTCTAAAGTTTCGGAAATTGAAATTTCGATCAGGTTTTAGGGATTTTCAATTTTAACGATTCCAAAAACCACAGAATGTCTAGTCACCCTATACCATCACTTTGAGCTCAATTAGCTCGGTTCCGGTGAATGATATCAATAAGTTGTCAACTAAGAAAACGTATTACATAATTCCACTTATATATTATCCGTTAATCAATTTTCAATATATTTTATAGGAACCGAGCTAATTGAGCTCAAAGTGTACGTAAAGTGTGGGCTTTTAGATTCCAAAATTTTAAAAATTCTAATATTATTTCTTGACAAAACACTGACGCATTTTTCGTACATTTCAACACCACCACAACACTTTTTCTCATTATTGTCAGTTTCCAATAGACCAAAAATTTTCCCAAAATTTCCATATTCATACATTAATGGATTTTTGGCGTCTATTTTCTACATATACACTTTTCGTTTGGCTACACTGTTTTACACTCTGCCAGATTTAATTTTCAGCGATTGCTTTTGAAAACCTGTGTCAGATTTCCCTATTTTTTAAACAATTGCTTGAGGCCACGCCCTTTTTCTCGCATTACTTGGGCTATGTGGGAAAAGGGGCGTGGCCTCCTCACTGTTGCGAAAGAACGCCTGTGGGGAGGGTGGCTCGCATTTGTAATGATTCATGATCAGAATCTGGTCGTTTGAAAAACCACTTAACCATTGTTCAAGTCGATATGTATTTCCACACAAAGTGATATCACAAGACAACCATTCCCCCTTGTCAACATGTTATTGCTCATTGCCCTCAACTACAGTATCCCCTTTTTATTAGTGCAACTACTTCCCTGTTTTTTCTCGAACTTTCGAGCTTTAGCTGCAAATTTTCTCTCTTCTTGTGGCATACAGTTTGTTCAGTACACTTTCCCATAGCCTTTTCTTAATTTTTT</canonical>
            <polymorphic>GAACAGGATCTTTGGACTTTTGTAGGAAAATCGCCGAAAATCGGGGGTTACGGTAGTTTTCGTTTTGAGCCTTCTAAAGTTTCGGAAATTGAAATTTCGATCAGGTTTTAGGGATTTTCAATTTTAACGATTCCAAAAACCACAGAATGTCTAGTCACCCTATACCATCACTTTGAGCTCAATTAGCTCGGTTCCGGTGAATGATATCAATAAGTTGTCAACTAAGAAAACGTATTACATAATTCCACTTATATATTATCCGTTAATCAATTTTCAATATATTTTATAGGAACCGAGCTAATTGAGCTCAAAGTGTACGTAAAGTGTGGGCTTTTAGATTCCAAAATTTTAAAAATTCTAATATTATTTCTTGACAAAACACTGACGCATTTTTCGTACATTTCAACACCACCACAACACTTTTTCTCATTATTGTCAGTTTCCAATAGACCAAAAATTTTCCCAAAATTTCCATATTCATACATTAATGGATTTTTGGYGTCTATTTTCTACATATACACTTTTCGTTTGGCTACACTGTTTTACACTCTGCCAGATTTAATTTTCAGCGATTGCTTTTGAAAACCTGTGTCAGATTTCCCTATTTTTTAAACAATTGCTTGAGGCCACGCCCTTTTTCTCGCATTACTTGGGCTATGTGGGAAAAGGGGCGTGGCCTCCTCACTGTTGCGAAAGAACGCCTGTGGGGAGGGTGGCTCGCATTTGTAATGATTCATGATCAGAATCTGGTCGTTTGAAAAACCACTTAACCATTGTTCAAGTCGATATGTATTTCCACACAAAGTGATATCACAAGACAACCATTCCCCCTTGTCAACATGTTATTGCTCATTGCCCTCAACTACAGTATCCCCTTTTTATTAGTGCAACTACTTCCCTGTTTTTTCTCGAACTTTCGAGCTTTAGCTGCAAATTTTCTCTCTTCTTGTGGCATACAGTTTGTTCAGTACACTTTCCCATAGCCTTTTCTTAATTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTATTTCTTGACAAAACACTGAC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATAGGGAAATCTGACACA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTATTTCTTGACAAAACACTGACGCATTTTTCGTACATTTCAACACCACCACAACACTTTTTCTCATTATTGTCAGTTTCCAATAGACCAAAAATTTTCCCAAAATTTCCATATTCATACATTAATGGATTTTTGGCGTCTATTTTCTACATATACACTTTTCGTTTGGCTACACTGTTTTACACTCTGCCAGATTTAATTTTCAGCGATTGCTTTTGAAAACCTGTGTCAGATTTCCCTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTATTTCTTGACAAAACACTGACGCATTTTTCGTACATTTCAACACCACCACAACACTTTTTCTCATTATTGTCAGTTTCCAATAGACCAAAAATTTTCCCAAAATTTCCATATTCATACATTAATGGATTTTTGGYGTCTATTTTCTACATATACACTTTTCGTTTGGCTACACTGTTTTACACTCTGCCAGATTTAATTTTCAGCGATTGCTTTTGAAAACCTGTGTCAGATTTCCCTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18005</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>204468</contig_pos>
        <strand></strand>
        <context>TTTACACTCT[G/C]CCAGATTTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TCTATTTTCTACATATACACTTTTCGTTTGGCTACACTGTTTTACACTCT</left_flank>
        <right_flank>CCAGATTTAATTTTCAGCGATTGCTTTTGAAAACCTGTGTCAGATTTCCC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAGTTTTCGTTTTGAGCCTTCTAAAGTTTCGGAAATTGAAATTTCGATCAGGTTTTAGGGATTTTCAATTTTAACGATTCCAAAAACCACAGAATGTCTAGTCACCCTATACCATCACTTTGAGCTCAATTAGCTCGGTTCCGGTGAATGATATCAATAAGTTGTCAACTAAGAAAACGTATTACATAATTCCACTTATATATTATCCGTTAATCAATTTTCAATATATTTTATAGGAACCGAGCTAATTGAGCTCAAAGTGTACGTAAAGTGTGGGCTTTTAGATTCCAAAATTTTAAAAATTCTAATATTATTTCTTGACAAAACACTGACGCATTTTTCGTACATTTCAACACCACCACAACACTTTTTCTCATTATTGTCAGTTTCCAATAGACCAAAAATTTTCCCAAAATTTCCATATTCATACATTAATGGATTTTTGGCGTCTATTTTCTACATATACACTTTTCGTTTGGCTACACTGTTTTACACTCTGCCAGATTTAATTTTCAGCGATTGCTTTTGAAAACCTGTGTCAGATTTCCCTATTTTTTAAACAATTGCTTGAGGCCACGCCCTTTTTCTCGCATTACTTGGGCTATGTGGGAAAAGGGGCGTGGCCTCCTCACTGTTGCGAAAGAACGCCTGTGGGGAGGGTGGCTCGCATTTGTAATGATTCATGATCAGAATCTGGTCGTTTGAAAAACCACTTAACCATTGTTCAAGTCGATATGTATTTCCACACAAAGTGATATCACAAGACAACCATTCCCCCTTGTCAACATGTTATTGCTCATTGCCCTCAACTACAGTATCCCCTTTTTATTAGTGCAACTACTTCCCTGTTTTTTCTCGAACTTTCGAGCTTTAGCTGCAAATTTTCTCTCTTCTTGTGGCATACAGTTTGTTCAGTACACTTTCCCATAGCCTTTTCTTAATTTTTTTCCCCTTCGATTGCATCGATGGGGCGGGTTAAAAAGAACACACCGACACAAA</canonical>
            <polymorphic>GTAGTTTTCGTTTTGAGCCTTCTAAAGTTTCGGAAATTGAAATTTCGATCAGGTTTTAGGGATTTTCAATTTTAACGATTCCAAAAACCACAGAATGTCTAGTCACCCTATACCATCACTTTGAGCTCAATTAGCTCGGTTCCGGTGAATGATATCAATAAGTTGTCAACTAAGAAAACGTATTACATAATTCCACTTATATATTATCCGTTAATCAATTTTCAATATATTTTATAGGAACCGAGCTAATTGAGCTCAAAGTGTACGTAAAGTGTGGGCTTTTAGATTCCAAAATTTTAAAAATTCTAATATTATTTCTTGACAAAACACTGACGCATTTTTCGTACATTTCAACACCACCACAACACTTTTTCTCATTATTGTCAGTTTCCAATAGACCAAAAATTTTCCCAAAATTTCCATATTCATACATTAATGGATTTTTGGCGTCTATTTTCTACATATACACTTTTCGTTTGGCTACACTGTTTTACACTCTSCCAGATTTAATTTTCAGCGATTGCTTTTGAAAACCTGTGTCAGATTTCCCTATTTTTTAAACAATTGCTTGAGGCCACGCCCTTTTTCTCGCATTACTTGGGCTATGTGGGAAAAGGGGCGTGGCCTCCTCACTGTTGCGAAAGAACGCCTGTGGGGAGGGTGGCTCGCATTTGTAATGATTCATGATCAGAATCTGGTCGTTTGAAAAACCACTTAACCATTGTTCAAGTCGATATGTATTTCCACACAAAGTGATATCACAAGACAACCATTCCCCCTTGTCAACATGTTATTGCTCATTGCCCTCAACTACAGTATCCCCTTTTTATTAGTGCAACTACTTCCCTGTTTTTTCTCGAACTTTCGAGCTTTAGCTGCAAATTTTCTCTCTTCTTGTGGCATACAGTTTGTTCAGTACACTTTCCCATAGCCTTTTCTTAATTTTTTTCCCCTTCGATTGCATCGATGGGGCGGGTTAAAAAGAACACACCGACACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTATTTCTTGACAAAACACTGAC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATAGGGAAATCTGACACA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTATTTCTTGACAAAACACTGACGCATTTTTCGTACATTTCAACACCACCACAACACTTTTTCTCATTATTGTCAGTTTCCAATAGACCAAAAATTTTCCCAAAATTTCCATATTCATACATTAATGGATTTTTGGCGTCTATTTTCTACATATACACTTTTCGTTTGGCTACACTGTTTTACACTCTGCCAGATTTAATTTTCAGCGATTGCTTTTGAAAACCTGTGTCAGATTTCCCTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTATTTCTTGACAAAACACTGACGCATTTTTCGTACATTTCAACACCACCACAACACTTTTTCTCATTATTGTCAGTTTCCAATAGACCAAAAATTTTCCCAAAATTTCCATATTCATACATTAATGGATTTTTGGCGTCTATTTTCTACATATACACTTTTCGTTTGGCTACACTGTTTTACACTCTSCCAGATTTAATTTTCAGCGATTGCTTTTGAAAACCTGTGTCAGATTTCCCTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18006</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>209607</contig_pos>
        <strand>+</strand>
        <context>ATAACCGAAA[A/C]GCTTCTAGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTAGAAACCGAACTAATGATAAAAGGATATATGAGAGAGGATAACCGAAA</left_flank>
        <right_flank>GCTTCTAGATCCGGTAGAAAGAAAATCCAAGAGTCTGAGGAGCCTATTGT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTCTGAGATTTTCAGGCGAATTGAAACAATTTAGACTATTTTTAAGAGATCCAAAGTTATAACTTTGACCTAAATTTTCTCAGTTGTTGTAAAAGATATCAAAAAGTTGCCAACTGATAAATCATTTATCAAAATGTCACAAACATTTTATTAGTTGACACATTTTTGATATCTAGCATAGTAATTGAGATAATTTAGCTCAAGCTTGGGTGCCCGTCTATTAAAGGTTTTAAGGTATTTTTGCCCGATACTGTATGATCAAATCAATTCCTAATTATTTGAACAATCGAGACCCAAACCAATGAATATTTTATTTCAGACGAATCCACACCATCCGGACACACTGAAAATCCTTCCACGACCATCCAGCCACAACCAACCACTCGTCAAGCAGAACGTTCGAAAATCCCACGAAAATCAAGACAAGACCACCCGCCGAGCGAATATCTAGAAACCGAACTAATGATAAAAGGATATATGAGAGAGGATAACCGAAACGCTTCTAGATCCGGTAGAAAGAAAATCCAAGAGTCTGAGGAGCCTATTGTCTCGGTAGACTGCGGTAAAGTGATAGACGAGATGGTGGAGAGAGTGATGAAGGGGAAAATTGAGGATATTGTCATGCCTCCAGCCAAAAGAAGAAGAAGATCCATGGCAGGATCGACGGCTCAAGAATCCGAAGGTACGAAGAAGAAAGTTAGACGAGAAAAGAAGACGACTTCGGATGATGCGGACGCTTCTGATAATTCTAACCGTATTCCGGTTGATGATGTTTCCACTCAAAAGCATATGAAGTCAAAGTCTGTGAATTCTGTTTTAGAAGATACTACCGTCACGGGAGAGTCTAGACAAACTTCAAGTGGTGAAGCTGCTGCCCAAGCTGAGGAGACTTCTCCTCAAGGAAACCAAGTTGTTGTAGATGACATTATGAGAGAGTCGAGTCGATCTGAAGATGCTGGAACTGCCCATGCCGAGGAAGCTGCTCCTGAAGAAATTCA</canonical>
            <polymorphic>TACTCTGAGATTTTCAGGCGAATTGAAACAATTTAGACTATTTTTAAGAGATCCAAAGTTATAACTTTGACCTAAATTTTCTCAGTTGTTGTAAAAGATATCAAAAAGTTGCCAACTGATAAATCATTTATCAAAATGTCACAAACATTTTATTAGTTGACACATTTTTGATATCTAGCATAGTAATTGAGATAATTTAGCTCAAGCTTGGGTGCCCGTCTATTAAAGGTTTTAAGGTATTTTTGCCCGATACTGTATGATCAAATCAATTCCTAATTATTTGAACAATCGAGACCCAAACCAATGAATATTTTATTTCAGACGAATCCACACCATCCGGACACACTGAAAATCCTTCCACGACCATCCAGCCACAACCAACCACTCGTCAAGCAGAACGTTCGAAAATCCCACGAAAATCAAGACAAGACCACCCGCCGAGCGAATATCTAGAAACCGAACTAATGATAAAAGGATATATGAGAGAGGATAACCGAAAMGCTTCTAGATCCGGTAGAAAGAAAATCCAAGAGTCTGAGGAGCCTATTGTCTCGGTAGACTGCGGTAAAGTGATAGACGAGATGGTGGAGAGAGTGATGAAGGGGAAAATTGAGGATATTGTCATGCCTCCAGCCAAAAGAAGAAGAAGATCCATGGCAGGATCGACGGCTCAAGAATCCGAAGGTACGAAGAAGAAAGTTAGACGAGAAAAGAAGACGACTTCGGATGATGCGGACGCTTCTGATAATTCTAACCGTATTCCGGTTGATGATGTTTCCACTCAAAAGCATATGAAGTCAAAGTCTGTGAATTCTGTTTTAGAAGATACTACCGTCACGGGAGAGTCTAGACAAACTTCAAGTGGTGAAGCTGCTGCCCAAGCTGAGGAGACTTCTCCTCAAGGAAACCAAGTTGTTGTAGATGACATTATGAGAGAGTCGAGTCGATCTGAAGATGCTGGAACTGCCCATGCCGAGGAAGCTGCTCCTGAAGAAATTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTATTTCAGACGAATCCAC</pcr_primer_p1>
		<pcr_primer_p2>AGACAATAGGCTCCTCAGACT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATTTTATTTCAGACGAATCCACACCATCCGGACACACTGAAAATCCTTCCACGACCATCCAGCCACAACCAACCACTCGTCAAGCAGAACGTTCGAAAATCCCACGAAAATCAAGACAAGACCACCCGCCGAGCGAATATCTAGAAACCGAACTAATGATAAAAGGATATATGAGAGAGGATAACCGAAACGCTTCTAGATCCGGTAGAAAGAAAATCCAAGAGTCTGAGGAGCCTATTGTCT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTATTTCAGACGAATCCACACCATCCGGACACACTGAAAATCCTTCCACGACCATCCAGCCACAACCAACCACTCGTCAAGCAGAACGTTCGAAAATCCCACGAAAATCAAGACAAGACCACCCGCCGAGCGAATATCTAGAAACCGAACTAATGATAAAAGGATATATGAGAGAGGATAACCGAAAMGCTTCTAGATCCGGTAGAAAGAAAATCCAAGAGTCTGAGGAGCCTATTGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18007</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>209450</contig_pos>
        <strand>+</strand>
        <context>CCATCCGGAC[A/C]CACTGAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GACCCAAACCAATGAATATTTTATTTCAGACGAATCCACACCATCCGGAC</left_flank>
        <right_flank>CACTGAAAATCCTTCCACGACCATCCAGCCACAACCAACCACTCGTCAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATCGGAAAGGAAGTGTCGGAGCCAGAGACGTTAGAAGCTCCAGTTATTCAATCACAGAAACGAGTCCTTAGGAAGAGGAAATCGGGAGCAGAGTTGATTTCTTCAATCGATAACATATCCGGTAAGTTGAAGCTCTAGTTTTGTTTACAATTAGTATACTCTGAGATTTTCAGGCGAATTGAAACAATTTAGACTATTTTTAAGAGATCCAAAGTTATAACTTTGACCTAAATTTTCTCAGTTGTTGTAAAAGATATCAAAAAGTTGCCAACTGATAAATCATTTATCAAAATGTCACAAACATTTTATTAGTTGACACATTTTTGATATCTAGCATAGTAATTGAGATAATTTAGCTCAAGCTTGGGTGCCCGTCTATTAAAGGTTTTAAGGTATTTTTGCCCGATACTGTATGATCAAATCAATTCCTAATTATTTGAACAATCGAGACCCAAACCAATGAATATTTTATTTCAGACGAATCCACACCATCCGGACACACTGAAAATCCTTCCACGACCATCCAGCCACAACCAACCACTCGTCAAGCAGAACGTTCGAAAATCCCACGAAAATCAAGACAAGACCACCCGCCGAGCGAATATCTAGAAACCGAACTAATGATAAAAGGATATATGAGAGAGGATAACCGAAACGCTTCTAGATCCGGTAGAAAGAAAATCCAAGAGTCTGAGGAGCCTATTGTCTCGGTAGACTGCGGTAAAGTGATAGACGAGATGGTGGAGAGAGTGATGAAGGGGAAAATTGAGGATATTGTCATGCCTCCAGCCAAAAGAAGAAGAAGATCCATGGCAGGATCGACGGCTCAAGAATCCGAAGGTACGAAGAAGAAAGTTAGACGAGAAAAGAAGACGACTTCGGATGATGCGGACGCTTCTGATAATTCTAACCGTATTCCGGTTGATGATGTTTCCACTCAAAAGCATATGAAGTCAAAGTCTGTGAATTCTGTTTTAGAAGATACTACCGTCACGGGAG</canonical>
            <polymorphic>GATCGGAAAGGAAGTGTCGGAGCCAGAGACGTTAGAAGCTCCAGTTATTCAATCACAGAAACGAGTCCTTAGGAAGAGGAAATCGGGAGCAGAGTTGATTTCTTCAATCGATAACATATCCGGTAAGTTGAAGCTCTAGTTTTGTTTACAATTAGTATACTCTGAGATTTTCAGGCGAATTGAAACAATTTAGACTATTTTTAAGAGATCCAAAGTTATAACTTTGACCTAAATTTTCTCAGTTGTTGTAAAAGATATCAAAAAGTTGCCAACTGATAAATCATTTATCAAAATGTCACAAACATTTTATTAGTTGACACATTTTTGATATCTAGCATAGTAATTGAGATAATTTAGCTCAAGCTTGGGTGCCCGTCTATTAAAGGTTTTAAGGTATTTTTGCCCGATACTGTATGATCAAATCAATTCCTAATTATTTGAACAATCGAGACCCAAACCAATGAATATTTTATTTCAGACGAATCCACACCATCCGGACMCACTGAAAATCCTTCCACGACCATCCAGCCACAACCAACCACTCGTCAAGCAGAACGTTCGAAAATCCCACGAAAATCAAGACAAGACCACCCGCCGAGCGAATATCTAGAAACCGAACTAATGATAAAAGGATATATGAGAGAGGATAACCGAAACGCTTCTAGATCCGGTAGAAAGAAAATCCAAGAGTCTGAGGAGCCTATTGTCTCGGTAGACTGCGGTAAAGTGATAGACGAGATGGTGGAGAGAGTGATGAAGGGGAAAATTGAGGATATTGTCATGCCTCCAGCCAAAAGAAGAAGAAGATCCATGGCAGGATCGACGGCTCAAGAATCCGAAGGTACGAAGAAGAAAGTTAGACGAGAAAAGAAGACGACTTCGGATGATGCGGACGCTTCTGATAATTCTAACCGTATTCCGGTTGATGATGTTTCCACTCAAAAGCATATGAAGTCAAAGTCTGTGAATTCTGTTTTAGAAGATACTACCGTCACGGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>243 184 139 116 52 39 29 29 28 21 20 16 15 15 14 11 10 9 6 2 2</canonical_bands>
                <polymorphic_bands>243 184 139 116 52 39 29 29 28 21 20 16 15 15 14 13 10 9 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTATGATCAAATCAATTCCTAA</pcr_primer_p1>
		<pcr_primer_p2>CGGTTATCCTCTCTCATATATCC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CTGTATGATCAAATCAATTCCTAATTATTTGAACAATCGAGACCCAAACCAATGAATATTTTATTTCAGACGAATCCACACCATCCGGACACACTGAAAATCCTTCCACGACCATCCAGCCACAACCAACCACTCGTCAAGCAGAACGTTCGAAAATCCCACGAAAATCAAGACAAGACCACCCGCCGAGCGAATATCTAGAAACCGAACTAATGATAAAAGGATATATGAGAGAGGATAACCG</canonical_amplicon>
		<polymorphic_amplicon>CTGTATGATCAAATCAATTCCTAATTATTTGAACAATCGAGACCCAAACCAATGAATATTTTATTTCAGACGAATCCACACCATCCGGACMCACTGAAAATCCTTCCACGACCATCCAGCCACAACCAACCACTCGTCAAGCAGAACGTTCGAAAATCCCACGAAAATCAAGACAAGACCACCCGCCGAGCGAATATCTAGAAACCGAACTAATGATAAAAGGATATATGAGAGAGGATAACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18008</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>209416</contig_pos>
        <strand>+</strand>
        <context>AACCAATGAA[A/T]ATTTTATTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATCAAATCAATTCCTAATTATTTGAACAATCGAGACCCAAACCAATGAA</left_flank>
        <right_flank>ATTTTATTTCAGACGAATCCACACCATCCGGACACACTGAAAATCCTTCC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAGGATGGTGGGGATCGAACAAAGGAGTCAGCGATCGGAAAGGAAGTGTCGGAGCCAGAGACGTTAGAAGCTCCAGTTATTCAATCACAGAAACGAGTCCTTAGGAAGAGGAAATCGGGAGCAGAGTTGATTTCTTCAATCGATAACATATCCGGTAAGTTGAAGCTCTAGTTTTGTTTACAATTAGTATACTCTGAGATTTTCAGGCGAATTGAAACAATTTAGACTATTTTTAAGAGATCCAAAGTTATAACTTTGACCTAAATTTTCTCAGTTGTTGTAAAAGATATCAAAAAGTTGCCAACTGATAAATCATTTATCAAAATGTCACAAACATTTTATTAGTTGACACATTTTTGATATCTAGCATAGTAATTGAGATAATTTAGCTCAAGCTTGGGTGCCCGTCTATTAAAGGTTTTAAGGTATTTTTGCCCGATACTGTATGATCAAATCAATTCCTAATTATTTGAACAATCGAGACCCAAACCAATGAATATTTTATTTCAGACGAATCCACACCATCCGGACACACTGAAAATCCTTCCACGACCATCCAGCCACAACCAACCACTCGTCAAGCAGAACGTTCGAAAATCCCACGAAAATCAAGACAAGACCACCCGCCGAGCGAATATCTAGAAACCGAACTAATGATAAAAGGATATATGAGAGAGGATAACCGAAACGCTTCTAGATCCGGTAGAAAGAAAATCCAAGAGTCTGAGGAGCCTATTGTCTCGGTAGACTGCGGTAAAGTGATAGACGAGATGGTGGAGAGAGTGATGAAGGGGAAAATTGAGGATATTGTCATGCCTCCAGCCAAAAGAAGAAGAAGATCCATGGCAGGATCGACGGCTCAAGAATCCGAAGGTACGAAGAAGAAAGTTAGACGAGAAAAGAAGACGACTTCGGATGATGCGGACGCTTCTGATAATTCTAACCGTATTCCGGTTGATGATGTTTCCACTCAAAAGCATATGAAGTCAAAGTCTGTG</canonical>
            <polymorphic>CAAAGGATGGTGGGGATCGAACAAAGGAGTCAGCGATCGGAAAGGAAGTGTCGGAGCCAGAGACGTTAGAAGCTCCAGTTATTCAATCACAGAAACGAGTCCTTAGGAAGAGGAAATCGGGAGCAGAGTTGATTTCTTCAATCGATAACATATCCGGTAAGTTGAAGCTCTAGTTTTGTTTACAATTAGTATACTCTGAGATTTTCAGGCGAATTGAAACAATTTAGACTATTTTTAAGAGATCCAAAGTTATAACTTTGACCTAAATTTTCTCAGTTGTTGTAAAAGATATCAAAAAGTTGCCAACTGATAAATCATTTATCAAAATGTCACAAACATTTTATTAGTTGACACATTTTTGATATCTAGCATAGTAATTGAGATAATTTAGCTCAAGCTTGGGTGCCCGTCTATTAAAGGTTTTAAGGTATTTTTGCCCGATACTGTATGATCAAATCAATTCCTAATTATTTGAACAATCGAGACCCAAACCAATGAAWATTTTATTTCAGACGAATCCACACCATCCGGACACACTGAAAATCCTTCCACGACCATCCAGCCACAACCAACCACTCGTCAAGCAGAACGTTCGAAAATCCCACGAAAATCAAGACAAGACCACCCGCCGAGCGAATATCTAGAAACCGAACTAATGATAAAAGGATATATGAGAGAGGATAACCGAAACGCTTCTAGATCCGGTAGAAAGAAAATCCAAGAGTCTGAGGAGCCTATTGTCTCGGTAGACTGCGGTAAAGTGATAGACGAGATGGTGGAGAGAGTGATGAAGGGGAAAATTGAGGATATTGTCATGCCTCCAGCCAAAAGAAGAAGAAGATCCATGGCAGGATCGACGGCTCAAGAATCCGAAGGTACGAAGAAGAAAGTTAGACGAGAAAAGAAGACGACTTCGGATGATGCGGACGCTTCTGATAATTCTAACCGTATTCCGGTTGATGATGTTTCCACTCAAAAGCATATGAAGTCAAAGTCTGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTATGATCAAATCAATTCCTAA</pcr_primer_p1>
		<pcr_primer_p2>CGGTTATCCTCTCTCATATATCC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CTGTATGATCAAATCAATTCCTAATTATTTGAACAATCGAGACCCAAACCAATGAATATTTTATTTCAGACGAATCCACACCATCCGGACACACTGAAAATCCTTCCACGACCATCCAGCCACAACCAACCACTCGTCAAGCAGAACGTTCGAAAATCCCACGAAAATCAAGACAAGACCACCCGCCGAGCGAATATCTAGAAACCGAACTAATGATAAAAGGATATATGAGAGAGGATAACCG</canonical_amplicon>
		<polymorphic_amplicon>CTGTATGATCAAATCAATTCCTAATTATTTGAACAATCGAGACCCAAACCAATGAAWATTTTATTTCAGACGAATCCACACCATCCGGACACACTGAAAATCCTTCCACGACCATCCAGCCACAACCAACCACTCGTCAAGCAGAACGTTCGAAAATCCCACGAAAATCAAGACAAGACCACCCGCCGAGCGAATATCTAGAAACCGAACTAATGATAAAAGGATATATGAGAGAGGATAACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18009</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>209333</contig_pos>
        <strand></strand>
        <context>ccgtctatta[A/C]aggttttaag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAGCATAGTAATTGAGATAATTTAGCTCAAGCTTGGGTGCCCGTCTATTA</left_flank>
        <right_flank>AGGTTTTAAGGTATTTTTGCCCGATACTGTATGATCAAATCAATTCCTAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGGGTTCGGAGATAGCGAGAGGTCTTCTATTGGCCAGTCTTCAAACTTCGATGGATACTACTGTTGGGGCGGAGGACAGCTCAAAGGATGGTGGGGATCGAACAAAGGAGTCAGCGATCGGAAAGGAAGTGTCGGAGCCAGAGACGTTAGAAGCTCCAGTTATTCAATCACAGAAACGAGTCCTTAGGAAGAGGAAATCGGGAGCAGAGTTGATTTCTTCAATCGATAACATATCCGGTAAGTTGAAGCTCTAGTTTTGTTTACAATTAGTATACTCTGAGATTTTCAGGCGAATTGAAACAATTTAGACTATTTTTAAGAGATCCAAAGTTATAACTTTGACCTAAATTTTCTCAGTTGTTGTAAAAGATATCAAAAAGTTGCCAACTGATAAATCATTTATCAAAATGTCACAAACATTTTATTAGTTGACACATTTTTGATATCTAGCATAGTAATTGAGATAATTTAGCTCAAGCTTGGGTGCCCGTCTATTAAAGGTTTTAAGGTATTTTTGCCCGATACTGTATGATCAAATCAATTCCTAATTATTTGAACAATCGAGACCCAAACCAATGAATATTTTATTTCAGACGAATCCACACCATCCGGACACACTGAAAATCCTTCCACGACCATCCAGCCACAACCAACCACTCGTCAAGCAGAACGTTCGAAAATCCCACGAAAATCAAGACAAGACCACCCGCCGAGCGAATATCTAGAAACCGAACTAATGATAAAAGGATATATGAGAGAGGATAACCGAAACGCTTCTAGATCCGGTAGAAAGAAAATCCAAGAGTCTGAGGAGCCTATTGTCTCGGTAGACTGCGGTAAAGTGATAGACGAGATGGTGGAGAGAGTGATGAAGGGGAAAATTGAGGATATTGTCATGCCTCCAGCCAAAAGAAGAAGAAGATCCATGGCAGGATCGACGGCTCAAGAATCCGAAGGTACGAAGAAGAAAGTTAGACGAGAAAAGAAGACGACTTCGG</canonical>
            <polymorphic>GGAGGGTTCGGAGATAGCGAGAGGTCTTCTATTGGCCAGTCTTCAAACTTCGATGGATACTACTGTTGGGGCGGAGGACAGCTCAAAGGATGGTGGGGATCGAACAAAGGAGTCAGCGATCGGAAAGGAAGTGTCGGAGCCAGAGACGTTAGAAGCTCCAGTTATTCAATCACAGAAACGAGTCCTTAGGAAGAGGAAATCGGGAGCAGAGTTGATTTCTTCAATCGATAACATATCCGGTAAGTTGAAGCTCTAGTTTTGTTTACAATTAGTATACTCTGAGATTTTCAGGCGAATTGAAACAATTTAGACTATTTTTAAGAGATCCAAAGTTATAACTTTGACCTAAATTTTCTCAGTTGTTGTAAAAGATATCAAAAAGTTGCCAACTGATAAATCATTTATCAAAATGTCACAAACATTTTATTAGTTGACACATTTTTGATATCTAGCATAGTAATTGAGATAATTTAGCTCAAGCTTGGGTGCCCGTCTATTAMAGGTTTTAAGGTATTTTTGCCCGATACTGTATGATCAAATCAATTCCTAATTATTTGAACAATCGAGACCCAAACCAATGAATATTTTATTTCAGACGAATCCACACCATCCGGACACACTGAAAATCCTTCCACGACCATCCAGCCACAACCAACCACTCGTCAAGCAGAACGTTCGAAAATCCCACGAAAATCAAGACAAGACCACCCGCCGAGCGAATATCTAGAAACCGAACTAATGATAAAAGGATATATGAGAGAGGATAACCGAAACGCTTCTAGATCCGGTAGAAAGAAAATCCAAGAGTCTGAGGAGCCTATTGTCTCGGTAGACTGCGGTAAAGTGATAGACGAGATGGTGGAGAGAGTGATGAAGGGGAAAATTGAGGATATTGTCATGCCTCCAGCCAAAAGAAGAAGAAGATCCATGGCAGGATCGACGGCTCAAGAATCCGAAGGTACGAAGAAGAAAGTTAGACGAGAAAAGAAGACGACTTCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>494 318 179 9</canonical_bands>
                <polymorphic_bands>494 318 188</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTCAATCGATAACATATCC</pcr_primer_p1>
		<pcr_primer_p2>TCTCGATTGTTCAAATAATTAGG</pcr_primer_p2>
		<pcr_amplicon_size>353</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTCAATCGATAACATATCCGGTAAGTTGAAGCTCTAGTTTTGTTTACAATTAGTATACTCTGAGATTTTCAGGCGAATTGAAACAATTTAGACTATTTTTAAGAGATCCAAAGTTATAACTTTGACCTAAATTTTCTCAGTTGTTGTAAAAGATATCAAAAAGTTGCCAACTGATAAATCATTTATCAAAATGTCACAAACATTTTATTAGTTGACACATTTTTGATATCTAGCATAGTAATTGAGATAATTTAGCTCAAGCTTGGGTGCCCGTCTATTAAAGGTTTTAAGGTATTTTTGCCCGATACTGTATGATCAAATCAATTCCTAATTATTTGAACAATCGAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTCAATCGATAACATATCCGGTAAGTTGAAGCTCTAGTTTTGTTTACAATTAGTATACTCTGAGATTTTCAGGCGAATTGAAACAATTTAGACTATTTTTAAGAGATCCAAAGTTATAACTTTGACCTAAATTTTCTCAGTTGTTGTAAAAGATATCAAAAAGTTGCCAACTGATAAATCATTTATCAAAATGTCACAAACATTTTATTAGTTGACACATTTTTGATATCTAGCATAGTAATTGAGATAATTTAGCTCAAGCTTGGGTGCCCGTCTATTAMAGGTTTTAAGGTATTTTTGCCCGATACTGTATGATCAAATCAATTCCTAATTATTTGAACAATCGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18010</snp_id>
        <super_contig>c010901040.Contig1</super_contig>
        <contig_pos>17855</contig_pos>
        <strand>+</strand>
        <context>CGCGTGTTAG[A/G]AGAAGGATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCGTAATTAATATGCTCAAAATCTCCTGCTACGTGGTACGCGTGTTAG</left_flank>
        <right_flank>AGAAGGATAAGGGAAATTTAAAGCAGTTTCAGTTTGATTTAGCAACAAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTGCAAAGGCTGCTGAGAGACTTCACAGTGCTAATCCAGAGAAGTGTAGGTTCGTAGAAAAATCCATCATCAAGAAAAAAACGACTAGGCTAAATGAGCAGATTTTGAGCTCATTTTTCAATTAAATAATTATTCCCAATACCTAAAAAAATATTTTTTTCTTCCAATAATTCTTCAATCCCACCTTCAGATTCGTCACCAAGTACAATCACACAAAAGGAGAACTGGTTCTGAAGCTCACCGACGACGTCGTCTGCCTCCAATACAGCACCAACCAGTTGCAAGATGTGAAGAAGCTGGAAAAGCTGTCGTCAACTCTTCTCCGCAGCATCGTTACTCAATAATTATATGCTTTTTTGTCTGTCATTCAGTATTCCATTCAAATGTTTATAAAATATTTATTGGTCGAGTAATATGTTGCTGTTTTTTTTTTGTTTTTTCAGCTCAATTCGTAATTAATATGCTCAAAATCTCCTGCTACGTGGTACGCGTGTTAGAAGAAGGATAAGGGAAATTTAAAGCAGTTTCAGTTTGATTTAGCAACAAGAAAACAATGTCTCGCCGAAACGATAGTTCGAGAAGACATCGCAAATCACGTGCTGTCAAAAATGATCACGAATATCCGTTGGTTTCGTTCGATGGAGGAGTTGAGTCCTACGAAATCCCAGCCGACGAGGGCAAAAGCCCAGTTCACACTCGTCTCTCGCAGACTTCGACTCCAGGGGAAGTGAAGTACATGGATGAGATTGCTCTGCTCAAGCGTGGACGTATCGATAAAGATGCGCCGAAGCATCCATACAACCGTCGTGGACAGCCACCGCCGATCTCTGAACTCTCGATTCCATCGCCGCTTCCAACGAAAAGTCCGGGTCTTCACACTGTGATGAATGGGGTTCCAGATGCCACGAAAAGCTACAAAGTCGGATCCGATGGAGAATTGAAGTACTCGACAATCAAGGGTGGAGGCGAAAGGTTTGTTGGAACACCGCGATTTTTTC</canonical>
            <polymorphic>GTTTGCAAAGGCTGCTGAGAGACTTCACAGTGCTAATCCAGAGAAGTGTAGGTTCGTAGAAAAATCCATCATCAAGAAAAAAACGACTAGGCTAAATGAGCAGATTTTGAGCTCATTTTTCAATTAAATAATTATTCCCAATACCTAAAAAAATATTTTTTTCTTCCAATAATTCTTCAATCCCACCTTCAGATTCGTCACCAAGTACAATCACACAAAAGGAGAACTGGTTCTGAAGCTCACCGACGACGTCGTCTGCCTCCAATACAGCACCAACCAGTTGCAAGATGTGAAGAAGCTGGAAAAGCTGTCGTCAACTCTTCTCCGCAGCATCGTTACTCAATAATTATATGCTTTTTTGTCTGTCATTCAGTATTCCATTCAAATGTTTATAAAATATTTATTGGTCGAGTAATATGTTGCTGTTTTTTTTTTGTTTTTTCAGCTCAATTCGTAATTAATATGCTCAAAATCTCCTGCTACGTGGTACGCGTGTTAGRAGAAGGATAAGGGAAATTTAAAGCAGTTTCAGTTTGATTTAGCAACAAGAAAACAATGTCTCGCCGAAACGATAGTTCGAGAAGACATCGCAAATCACGTGCTGTCAAAAATGATCACGAATATCCGTTGGTTTCGTTCGATGGAGGAGTTGAGTCCTACGAAATCCCAGCCGACGAGGGCAAAAGCCCAGTTCACACTCGTCTCTCGCAGACTTCGACTCCAGGGGAAGTGAAGTACATGGATGAGATTGCTCTGCTCAAGCGTGGACGTATCGATAAAGATGCGCCGAAGCATCCATACAACCGTCGTGGACAGCCACCGCCGATCTCTGAACTCTCGATTCCATCGCCGCTTCCAACGAAAAGTCCGGGTCTTCACACTGTGATGAATGGGGTTCCAGATGCCACGAAAAGCTACAAAGTCGGATCCGATGGAGAATTGAAGTACTCGACAATCAAGGGTGGAGGCGAAAGGTTTGTTGGAACACCGCGATTTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGTATTCCATTCAAATGTTTAT</pcr_primer_p1>
		<pcr_primer_p2>TATTCGTGATCATTTTTGACAG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCAGTATTCCATTCAAATGTTTATAAAATATTTATTGGTCGAGTAATATGTTGCTGTTTTTTTTTTGTTTTTTCAGCTCAATTCGTAATTAATATGCTCAAAATCTCCTGCTACGTGGTACGCGTGTTAGAAGAAGGATAAGGGAAATTTAAAGCAGTTTCAGTTTGATTTAGCAACAAGAAAACAATGTCTCGCCGAAACGATAGTTCGAGAAGACATCGCAAATCACGTGCTGTCAAAAATGATCACGAATA</canonical_amplicon>
		<polymorphic_amplicon>TCAGTATTCCATTCAAATGTTTATAAAATATTTATTGGTCGAGTAATATGTTGCTGTTTTTTTTTTGTTTTTTCAGCTCAATTCGTAATTAATATGCTCAAAATCTCCTGCTACGTGGTACGCGTGTTAGRAGAAGGATAAGGGAAATTTAAAGCAGTTTCAGTTTGATTTAGCAACAAGAAAACAATGTCTCGCCGAAACGATAGTTCGAGAAGACATCGCAAATCACGTGCTGTCAAAAATGATCACGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18011</snp_id>
        <super_contig>c010901040.Contig1</super_contig>
        <contig_pos>17781</contig_pos>
        <strand>+</strand>
        <context>TATRTTGCTG[C/T]TTTTTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCATTCAAATGTTTATAAAATATTTATTGGTCGAGTAATATGTTGCTG</left_flank>
        <right_flank>TTTTTTTTTGTTTTTTCAGCTCAATTCGTAATTAATATGCTCAAAATCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGCTTTATAAATTTTCTTTCCTTCAAAAATAATTTTTCCAGACAAAATGACATATTTCACAAACTGGGAAGAGTTTGCAAAGGCTGCTGAGAGACTTCACAGTGCTAATCCAGAGAAGTGTAGGTTCGTAGAAAAATCCATCATCAAGAAAAAAACGACTAGGCTAAATGAGCAGATTTTGAGCTCATTTTTCAATTAAATAATTATTCCCAATACCTAAAAAAATATTTTTTTCTTCCAATAATTCTTCAATCCCACCTTCAGATTCGTCACCAAGTACAATCACACAAAAGGAGAACTGGTTCTGAAGCTCACCGACGACGTCGTCTGCCTCCAATACAGCACCAACCAGTTGCAAGATGTGAAGAAGCTGGAAAAGCTGTCGTCAACTCTTCTCCGCAGCATCGTTACTCAATAATTATATGCTTTTTTGTCTGTCATTCAGTATTCCATTCAAATGTTTATAAAATATTTATTGGTCGAGTAATATGTTGCTGTTTTTTTTTTGTTTTTTCAGCTCAATTCGTAATTAATATGCTCAAAATCTCCTGCTACGTGGTACGCGTGTTAGAAGAAGGATAAGGGAAATTTAAAGCAGTTTCAGTTTGATTTAGCAACAAGAAAACAATGTCTCGCCGAAACGATAGTTCGAGAAGACATCGCAAATCACGTGCTGTCAAAAATGATCACGAATATCCGTTGGTTTCGTTCGATGGAGGAGTTGAGTCCTACGAAATCCCAGCCGACGAGGGCAAAAGCCCAGTTCACACTCGTCTCTCGCAGACTTCGACTCCAGGGGAAGTGAAGTACATGGATGAGATTGCTCTGCTCAAGCGTGGACGTATCGATAAAGATGCGCCGAAGCATCCATACAACCGTCGTGGACAGCCACCGCCGATCTCTGAACTCTCGATTCCATCGCCGCTTCCAACGAAAAGTCCGGGTCTTCACACTGTGATGAATGGGGTTCCAGATGCCACGAAAAGCTACAAAGTCGG</canonical>
            <polymorphic>CCTGCTTTATAAATTTTCTTTCCTTCAAAAATAATTTTTCCAGACAAAATGACATATTTCACAAACTGGGAAGAGTTTGCAAAGGCTGCTGAGAGACTTCACAGTGCTAATCCAGAGAAGTGTAGGTTCGTAGAAAAATCCATCATCAAGAAAAAAACGACTAGGCTAAATGAGCAGATTTTGAGCTCATTTTTCAATTAAATAATTATTCCCAATACCTAAAAAAATATTTTTTTCTTCCAATAATTCTTCAATCCCACCTTCAGATTCGTCACCAAGTACAATCACACAAAAGGAGAACTGGTTCTGAAGCTCACCGACGACGTCGTCTGCCTCCAATACAGCACCAACCAGTTGCAAGATGTGAAGAAGCTGGAAAAGCTGTCGTCAACTCTTCTCCGCAGCATCGTTACTCAATAATTATATGCTTTTTTGTCTGTCATTCAGTATTCCATTCAAATGTTTATAAAATATTTATTGGTCGAGTAATATGTTGCTGYTTTTTTTTTGTTTTTTCAGCTCAATTCGTAATTAATATGCTCAAAATCTCCTGCTACGTGGTACGCGTGTTAGAAGAAGGATAAGGGAAATTTAAAGCAGTTTCAGTTTGATTTAGCAACAAGAAAACAATGTCTCGCCGAAACGATAGTTCGAGAAGACATCGCAAATCACGTGCTGTCAAAAATGATCACGAATATCCGTTGGTTTCGTTCGATGGAGGAGTTGAGTCCTACGAAATCCCAGCCGACGAGGGCAAAAGCCCAGTTCACACTCGTCTCTCGCAGACTTCGACTCCAGGGGAAGTGAAGTACATGGATGAGATTGCTCTGCTCAAGCGTGGACGTATCGATAAAGATGCGCCGAAGCATCCATACAACCGTCGTGGACAGCCACCGCCGATCTCTGAACTCTCGATTCCATCGCCGCTTCCAACGAAAAGTCCGGGTCTTCACACTGTGATGAATGGGGTTCCAGATGCCACGAAAAGCTACAAAGTCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGCTGTCGTCAACTCTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTTGTTGCTAAATCAAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGCTGTCGTCAACTCTTCTCCGCAGCATCGTTACTCAATAATTATATGCTTTTTTGTCTGTCATTCAGTATTCCATTCAAATGTTTATAAAATATTTATTGGTCGAGTAATATGTTGCTGTTTTTTTTTTGTTTTTTCAGCTCAATTCGTAATTAATATGCTCAAAATCTCCTGCTACGTGGTACGCGTGTTAGAAGAAGGATAAGGGAAATTTAAAGCAGTTTCAGTTTGATTTAGCAACAAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAGCTGTCGTCAACTCTTCTCCGCAGCATCGTTACTCAATAATTATATGCTTTTTTGTCTGTCATTCAGTATTCCATTCAAATGTTTATAAAATATTTATTGGTCGAGTAATATGTTGCTGYTTTTTTTTTGTTTTTTCAGCTCAATTCGTAATTAATATGCTCAAAATCTCCTGCTACGTGGTACGCGTGTTAGAAGAAGGATAAGGGAAATTTAAAGCAGTTTCAGTTTGATTTAGCAACAAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18012</snp_id>
        <super_contig>c010901040.Contig1</super_contig>
        <contig_pos>17774</contig_pos>
        <strand>+</strand>
        <context>CGAGTAATAT[A/G]TTGCTGYTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAGTATTCCATTCAAATGTTTATAAAATATTTATTGGTCGAGTAATAT</left_flank>
        <right_flank>TTGCTGTTTTTTTTTTGTTTTTTCAGCTCAATTCGTAATTAATATGCTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTTTCCTGCTTTATAAATTTTCTTTCCTTCAAAAATAATTTTTCCAGACAAAATGACATATTTCACAAACTGGGAAGAGTTTGCAAAGGCTGCTGAGAGACTTCACAGTGCTAATCCAGAGAAGTGTAGGTTCGTAGAAAAATCCATCATCAAGAAAAAAACGACTAGGCTAAATGAGCAGATTTTGAGCTCATTTTTCAATTAAATAATTATTCCCAATACCTAAAAAAATATTTTTTTCTTCCAATAATTCTTCAATCCCACCTTCAGATTCGTCACCAAGTACAATCACACAAAAGGAGAACTGGTTCTGAAGCTCACCGACGACGTCGTCTGCCTCCAATACAGCACCAACCAGTTGCAAGATGTGAAGAAGCTGGAAAAGCTGTCGTCAACTCTTCTCCGCAGCATCGTTACTCAATAATTATATGCTTTTTTGTCTGTCATTCAGTATTCCATTCAAATGTTTATAAAATATTTATTGGTCGAGTAATATGTTGCTGTTTTTTTTTTGTTTTTTCAGCTCAATTCGTAATTAATATGCTCAAAATCTCCTGCTACGTGGTACGCGTGTTAGAAGAAGGATAAGGGAAATTTAAAGCAGTTTCAGTTTGATTTAGCAACAAGAAAACAATGTCTCGCCGAAACGATAGTTCGAGAAGACATCGCAAATCACGTGCTGTCAAAAATGATCACGAATATCCGTTGGTTTCGTTCGATGGAGGAGTTGAGTCCTACGAAATCCCAGCCGACGAGGGCAAAAGCCCAGTTCACACTCGTCTCTCGCAGACTTCGACTCCAGGGGAAGTGAAGTACATGGATGAGATTGCTCTGCTCAAGCGTGGACGTATCGATAAAGATGCGCCGAAGCATCCATACAACCGTCGTGGACAGCCACCGCCGATCTCTGAACTCTCGATTCCATCGCCGCTTCCAACGAAAAGTCCGGGTCTTCACACTGTGATGAATGGGGTTCCAGATGCCACGAAAAGCTACA</canonical>
            <polymorphic>GTTTTTTCCTGCTTTATAAATTTTCTTTCCTTCAAAAATAATTTTTCCAGACAAAATGACATATTTCACAAACTGGGAAGAGTTTGCAAAGGCTGCTGAGAGACTTCACAGTGCTAATCCAGAGAAGTGTAGGTTCGTAGAAAAATCCATCATCAAGAAAAAAACGACTAGGCTAAATGAGCAGATTTTGAGCTCATTTTTCAATTAAATAATTATTCCCAATACCTAAAAAAATATTTTTTTCTTCCAATAATTCTTCAATCCCACCTTCAGATTCGTCACCAAGTACAATCACACAAAAGGAGAACTGGTTCTGAAGCTCACCGACGACGTCGTCTGCCTCCAATACAGCACCAACCAGTTGCAAGATGTGAAGAAGCTGGAAAAGCTGTCGTCAACTCTTCTCCGCAGCATCGTTACTCAATAATTATATGCTTTTTTGTCTGTCATTCAGTATTCCATTCAAATGTTTATAAAATATTTATTGGTCGAGTAATATRTTGCTGTTTTTTTTTTGTTTTTTCAGCTCAATTCGTAATTAATATGCTCAAAATCTCCTGCTACGTGGTACGCGTGTTAGAAGAAGGATAAGGGAAATTTAAAGCAGTTTCAGTTTGATTTAGCAACAAGAAAACAATGTCTCGCCGAAACGATAGTTCGAGAAGACATCGCAAATCACGTGCTGTCAAAAATGATCACGAATATCCGTTGGTTTCGTTCGATGGAGGAGTTGAGTCCTACGAAATCCCAGCCGACGAGGGCAAAAGCCCAGTTCACACTCGTCTCTCGCAGACTTCGACTCCAGGGGAAGTGAAGTACATGGATGAGATTGCTCTGCTCAAGCGTGGACGTATCGATAAAGATGCGCCGAAGCATCCATACAACCGTCGTGGACAGCCACCGCCGATCTCTGAACTCTCGATTCCATCGCCGCTTCCAACGAAAAGTCCGGGTCTTCACACTGTGATGAATGGGGTTCCAGATGCCACGAAAAGCTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGCTGTCGTCAACTCTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTTGTTGCTAAATCAAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGCTGTCGTCAACTCTTCTCCGCAGCATCGTTACTCAATAATTATATGCTTTTTTGTCTGTCATTCAGTATTCCATTCAAATGTTTATAAAATATTTATTGGTCGAGTAATATGTTGCTGTTTTTTTTTTGTTTTTTCAGCTCAATTCGTAATTAATATGCTCAAAATCTCCTGCTACGTGGTACGCGTGTTAGAAGAAGGATAAGGGAAATTTAAAGCAGTTTCAGTTTGATTTAGCAACAAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAGCTGTCGTCAACTCTTCTCCGCAGCATCGTTACTCAATAATTATATGCTTTTTTGTCTGTCATTCAGTATTCCATTCAAATGTTTATAAAATATTTATTGGTCGAGTAATATRTTGCTGTTTTTTTTTTGTTTTTTCAGCTCAATTCGTAATTAATATGCTCAAAATCTCCTGCTACGTGGTACGCGTGTTAGAAGAAGGATAAGGGAAATTTAAAGCAGTTTCAGTTTGATTTAGCAACAAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18013</snp_id>
        <super_contig>c010901040.Contig1</super_contig>
        <contig_pos>17751</contig_pos>
        <strand>+</strand>
        <context>ATGTTTATAA[A/T]ATATTTATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTATATGCTTTTTTGTCTGTCATTCAGTATTCCATTCAAATGTTTATAA</left_flank>
        <right_flank>ATATTTATTGGTCGAGTAATATGTTGCTGTTTTTTTTTTGTTTTTTCAGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTTCTTTTCAATATTGTCTTCGTTTTTTCCTGCTTTATAAATTTTCTTTCCTTCAAAAATAATTTTTCCAGACAAAATGACATATTTCACAAACTGGGAAGAGTTTGCAAAGGCTGCTGAGAGACTTCACAGTGCTAATCCAGAGAAGTGTAGGTTCGTAGAAAAATCCATCATCAAGAAAAAAACGACTAGGCTAAATGAGCAGATTTTGAGCTCATTTTTCAATTAAATAATTATTCCCAATACCTAAAAAAATATTTTTTTCTTCCAATAATTCTTCAATCCCACCTTCAGATTCGTCACCAAGTACAATCACACAAAAGGAGAACTGGTTCTGAAGCTCACCGACGACGTCGTCTGCCTCCAATACAGCACCAACCAGTTGCAAGATGTGAAGAAGCTGGAAAAGCTGTCGTCAACTCTTCTCCGCAGCATCGTTACTCAATAATTATATGCTTTTTTGTCTGTCATTCAGTATTCCATTCAAATGTTTATAAAATATTTATTGGTCGAGTAATATGTTGCTGTTTTTTTTTTGTTTTTTCAGCTCAATTCGTAATTAATATGCTCAAAATCTCCTGCTACGTGGTACGCGTGTTAGAAGAAGGATAAGGGAAATTTAAAGCAGTTTCAGTTTGATTTAGCAACAAGAAAACAATGTCTCGCCGAAACGATAGTTCGAGAAGACATCGCAAATCACGTGCTGTCAAAAATGATCACGAATATCCGTTGGTTTCGTTCGATGGAGGAGTTGAGTCCTACGAAATCCCAGCCGACGAGGGCAAAAGCCCAGTTCACACTCGTCTCTCGCAGACTTCGACTCCAGGGGAAGTGAAGTACATGGATGAGATTGCTCTGCTCAAGCGTGGACGTATCGATAAAGATGCGCCGAAGCATCCATACAACCGTCGTGGACAGCCACCGCCGATCTCTGAACTCTCGATTCCATCGCCGCTTCCAACGAAAAGTCCGGGTCTTCACACTGTGATGAATGGGGT</canonical>
            <polymorphic>CGTTTCTTTTCAATATTGTCTTCGTTTTTTCCTGCTTTATAAATTTTCTTTCCTTCAAAAATAATTTTTCCAGACAAAATGACATATTTCACAAACTGGGAAGAGTTTGCAAAGGCTGCTGAGAGACTTCACAGTGCTAATCCAGAGAAGTGTAGGTTCGTAGAAAAATCCATCATCAAGAAAAAAACGACTAGGCTAAATGAGCAGATTTTGAGCTCATTTTTCAATTAAATAATTATTCCCAATACCTAAAAAAATATTTTTTTCTTCCAATAATTCTTCAATCCCACCTTCAGATTCGTCACCAAGTACAATCACACAAAAGGAGAACTGGTTCTGAAGCTCACCGACGACGTCGTCTGCCTCCAATACAGCACCAACCAGTTGCAAGATGTGAAGAAGCTGGAAAAGCTGTCGTCAACTCTTCTCCGCAGCATCGTTACTCAATAATTATATGCTTTTTTGTCTGTCATTCAGTATTCCATTCAAATGTTTATAAWATATTTATTGGTCGAGTAATATGTTGCTGTTTTTTTTTTGTTTTTTCAGCTCAATTCGTAATTAATATGCTCAAAATCTCCTGCTACGTGGTACGCGTGTTAGAAGAAGGATAAGGGAAATTTAAAGCAGTTTCAGTTTGATTTAGCAACAAGAAAACAATGTCTCGCCGAAACGATAGTTCGAGAAGACATCGCAAATCACGTGCTGTCAAAAATGATCACGAATATCCGTTGGTTTCGTTCGATGGAGGAGTTGAGTCCTACGAAATCCCAGCCGACGAGGGCAAAAGCCCAGTTCACACTCGTCTCTCGCAGACTTCGACTCCAGGGGAAGTGAAGTACATGGATGAGATTGCTCTGCTCAAGCGTGGACGTATCGATAAAGATGCGCCGAAGCATCCATACAACCGTCGTGGACAGCCACCGCCGATCTCTGAACTCTCGATTCCATCGCCGCTTCCAACGAAAAGTCCGGGTCTTCACACTGTGATGAATGGGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>498 244 244 14</canonical_bands>
                <polymorphic_bands>742 244 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGCTGTCGTCAACTCTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTTGTTGCTAAATCAAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGCTGTCGTCAACTCTTCTCCGCAGCATCGTTACTCAATAATTATATGCTTTTTTGTCTGTCATTCAGTATTCCATTCAAATGTTTATAAAATATTTATTGGTCGAGTAATATGTTGCTGTTTTTTTTTTGTTTTTTCAGCTCAATTCGTAATTAATATGCTCAAAATCTCCTGCTACGTGGTACGCGTGTTAGAAGAAGGATAAGGGAAATTTAAAGCAGTTTCAGTTTGATTTAGCAACAAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAGCTGTCGTCAACTCTTCTCCGCAGCATCGTTACTCAATAATTATATGCTTTTTTGTCTGTCATTCAGTATTCCATTCAAATGTTTATAAWATATTTATTGGTCGAGTAATATGTTGCTGTTTTTTTTTTGTTTTTTCAGCTCAATTCGTAATTAATATGCTCAAAATCTCCTGCTACGTGGTACGCGTGTTAGAAGAAGGATAAGGGAAATTTAAAGCAGTTTCAGTTTGATTTAGCAACAAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18014</snp_id>
        <super_contig>c010901040.Contig1</super_contig>
        <contig_pos>17689</contig_pos>
        <strand>+</strand>
        <context>TCCGCAGCAT[C/T]GTTACTCAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAGATGTGAAGAAGCTGGAAAAGCTGTCGTCAACTCTTCTCCGCAGCAT</left_flank>
        <right_flank>GTTACTCAATAATTATATGCTTTTTTGTCTGTCATTCAGTATTCCATTCA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTTGGTAGAATCTTTGTGAAAATTGTCAAAAAATCAGTGTTCAATTTTAATCTTGCTTTTCGTTTCTTTTCAATATTGTCTTCGTTTTTTCCTGCTTTATAAATTTTCTTTCCTTCAAAAATAATTTTTCCAGACAAAATGACATATTTCACAAACTGGGAAGAGTTTGCAAAGGCTGCTGAGAGACTTCACAGTGCTAATCCAGAGAAGTGTAGGTTCGTAGAAAAATCCATCATCAAGAAAAAAACGACTAGGCTAAATGAGCAGATTTTGAGCTCATTTTTCAATTAAATAATTATTCCCAATACCTAAAAAAATATTTTTTTCTTCCAATAATTCTTCAATCCCACCTTCAGATTCGTCACCAAGTACAATCACACAAAAGGAGAACTGGTTCTGAAGCTCACCGACGACGTCGTCTGCCTCCAATACAGCACCAACCAGTTGCAAGATGTGAAGAAGCTGGAAAAGCTGTCGTCAACTCTTCTCCGCAGCATCGTTACTCAATAATTATATGCTTTTTTGTCTGTCATTCAGTATTCCATTCAAATGTTTATAAAATATTTATTGGTCGAGTAATATGTTGCTGTTTTTTTTTTGTTTTTTCAGCTCAATTCGTAATTAATATGCTCAAAATCTCCTGCTACGTGGTACGCGTGTTAGAAGAAGGATAAGGGAAATTTAAAGCAGTTTCAGTTTGATTTAGCAACAAGAAAACAATGTCTCGCCGAAACGATAGTTCGAGAAGACATCGCAAATCACGTGCTGTCAAAAATGATCACGAATATCCGTTGGTTTCGTTCGATGGAGGAGTTGAGTCCTACGAAATCCCAGCCGACGAGGGCAAAAGCCCAGTTCACACTCGTCTCTCGCAGACTTCGACTCCAGGGGAAGTGAAGTACATGGATGAGATTGCTCTGCTCAAGCGTGGACGTATCGATAAAGATGCGCCGAAGCATCCATACAACCGTCGTGGACAGCCACCGCCGATCTCTGAA</canonical>
            <polymorphic>ATCTTGGTAGAATCTTTGTGAAAATTGTCAAAAAATCAGTGTTCAATTTTAATCTTGCTTTTCGTTTCTTTTCAATATTGTCTTCGTTTTTTCCTGCTTTATAAATTTTCTTTCCTTCAAAAATAATTTTTCCAGACAAAATGACATATTTCACAAACTGGGAAGAGTTTGCAAAGGCTGCTGAGAGACTTCACAGTGCTAATCCAGAGAAGTGTAGGTTCGTAGAAAAATCCATCATCAAGAAAAAAACGACTAGGCTAAATGAGCAGATTTTGAGCTCATTTTTCAATTAAATAATTATTCCCAATACCTAAAAAAATATTTTTTTCTTCCAATAATTCTTCAATCCCACCTTCAGATTCGTCACCAAGTACAATCACACAAAAGGAGAACTGGTTCTGAAGCTCACCGACGACGTCGTCTGCCTCCAATACAGCACCAACCAGTTGCAAGATGTGAAGAAGCTGGAAAAGCTGTCGTCAACTCTTCTCCGCAGCATYGTTACTCAATAATTATATGCTTTTTTGTCTGTCATTCAGTATTCCATTCAAATGTTTATAAAATATTTATTGGTCGAGTAATATGTTGCTGTTTTTTTTTTGTTTTTTCAGCTCAATTCGTAATTAATATGCTCAAAATCTCCTGCTACGTGGTACGCGTGTTAGAAGAAGGATAAGGGAAATTTAAAGCAGTTTCAGTTTGATTTAGCAACAAGAAAACAATGTCTCGCCGAAACGATAGTTCGAGAAGACATCGCAAATCACGTGCTGTCAAAAATGATCACGAATATCCGTTGGTTTCGTTCGATGGAGGAGTTGAGTCCTACGAAATCCCAGCCGACGAGGGCAAAAGCCCAGTTCACACTCGTCTCTCGCAGACTTCGACTCCAGGGGAAGTGAAGTACATGGATGAGATTGCTCTGCTCAAGCGTGGACGTATCGATAAAGATGCGCCGAAGCATCCATACAACCGTCGTGGACAGCCACCGCCGATCTCTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTGCAAGATGTGAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>AACTGCTTTAAATTTCCCTTATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAGTTGCAAGATGTGAAGAAGCTGGAAAAGCTGTCGTCAACTCTTCTCCGCAGCATCGTTACTCAATAATTATATGCTTTTTTGTCTGTCATTCAGTATTCCATTCAAATGTTTATAAAATATTTATTGGTCGAGTAATATGTTGCTGTTTTTTTTTTGTTTTTTCAGCTCAATTCGTAATTAATATGCTCAAAATCTCCTGCTACGTGGTACGCGTGTTAGAAGAAGGATAAGGGAAATTTAAAGCAGTT</canonical_amplicon>
		<polymorphic_amplicon>CAGTTGCAAGATGTGAAGAAGCTGGAAAAGCTGTCGTCAACTCTTCTCCGCAGCATYGTTACTCAATAATTATATGCTTTTTTGTCTGTCATTCAGTATTCCATTCAAATGTTTATAAAATATTTATTGGTCGAGTAATATGTTGCTGTTTTTTTTTTGTTTTTTCAGCTCAATTCGTAATTAATATGCTCAAAATCTCCTGCTACGTGGTACGCGTGTTAGAAGAAGGATAAGGGAAATTTAAAGCAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18015</snp_id>
        <super_contig>c010901040.Contig1</super_contig>
        <contig_pos>17496</contig_pos>
        <strand>+</strand>
        <context>ATTATTCCCA[A/G]TACCTAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTAAATGAGCAGATTTTGAGCTCATTTTTCAATTAAATAATTATTCCCA</left_flank>
        <right_flank>TACCTAAAAAAATATTTTTTTCTTCCAATAATTCTTCAATCCCACCTTCA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGATAGAAATCGCTAACAAATCTAATTTAATGAACAAAATTCAATTTTCTGTTTGTAAAAATTCCGAAAAAATTCCCTGCAAAAGTGTGCAAACACAAATACGCACTTTTGCGGACAAAGCATTAAATCCTACGACTTATGCCTGATGTGGAAGGTCGTTTTAGGTTGCTTTCTAGCTCGAAAATCAATTAAATCTTGGTAGAATCTTTGTGAAAATTGTCAAAAAATCAGTGTTCAATTTTAATCTTGCTTTTCGTTTCTTTTCAATATTGTCTTCGTTTTTTCCTGCTTTATAAATTTTCTTTCCTTCAAAAATAATTTTTCCAGACAAAATGACATATTTCACAAACTGGGAAGAGTTTGCAAAGGCTGCTGAGAGACTTCACAGTGCTAATCCAGAGAAGTGTAGGTTCGTAGAAAAATCCATCATCAAGAAAAAAACGACTAGGCTAAATGAGCAGATTTTGAGCTCATTTTTCAATTAAATAATTATTCCCAATACCTAAAAAAATATTTTTTTCTTCCAATAATTCTTCAATCCCACCTTCAGATTCGTCACCAAGTACAATCACACAAAAGGAGAACTGGTTCTGAAGCTCACCGACGACGTCGTCTGCCTCCAATACAGCACCAACCAGTTGCAAGATGTGAAGAAGCTGGAAAAGCTGTCGTCAACTCTTCTCCGCAGCATCGTTACTCAATAATTATATGCTTTTTTGTCTGTCATTCAGTATTCCATTCAAATGTTTATAAAATATTTATTGGTCGAGTAATATGTTGCTGTTTTTTTTTTGTTTTTTCAGCTCAATTCGTAATTAATATGCTCAAAATCTCCTGCTACGTGGTACGCGTGTTAGAAGAAGGATAAGGGAAATTTAAAGCAGTTTCAGTTTGATTTAGCAACAAGAAAACAATGTCTCGCCGAAACGATAGTTCGAGAAGACATCGCAAATCACGTGCTGTCAAAAATGATCACGAATATCCGTTGGTTTCGTTCGA</canonical>
            <polymorphic>ACGATAGAAATCGCTAACAAATCTAATTTAATGAACAAAATTCAATTTTCTGTTTGTAAAAATTCCGAAAAAATTCCCTGCAAAAGTGTGCAAACACAAATACGCACTTTTGCGGACAAAGCATTAAATCCTACGACTTATGCCTGATGTGGAAGGTCGTTTTAGGTTGCTTTCTAGCTCGAAAATCAATTAAATCTTGGTAGAATCTTTGTGAAAATTGTCAAAAAATCAGTGTTCAATTTTAATCTTGCTTTTCGTTTCTTTTCAATATTGTCTTCGTTTTTTCCTGCTTTATAAATTTTCTTTCCTTCAAAAATAATTTTTCCAGACAAAATGACATATTTCACAAACTGGGAAGAGTTTGCAAAGGCTGCTGAGAGACTTCACAGTGCTAATCCAGAGAAGTGTAGGTTCGTAGAAAAATCCATCATCAAGAAAAAAACGACTAGGCTAAATGAGCAGATTTTGAGCTCATTTTTCAATTAAATAATTATTCCCARTACCTAAAAAAATATTTTTTTCTTCCAATAATTCTTCAATCCCACCTTCAGATTCGTCACCAAGTACAATCACACAAAAGGAGAACTGGTTCTGAAGCTCACCGACGACGTCGTCTGCCTCCAATACAGCACCAACCAGTTGCAAGATGTGAAGAAGCTGGAAAAGCTGTCGTCAACTCTTCTCCGCAGCATCGTTACTCAATAATTATATGCTTTTTTGTCTGTCATTCAGTATTCCATTCAAATGTTTATAAAATATTTATTGGTCGAGTAATATGTTGCTGTTTTTTTTTTGTTTTTTCAGCTCAATTCGTAATTAATATGCTCAAAATCTCCTGCTACGTGGTACGCGTGTTAGAAGAAGGATAAGGGAAATTTAAAGCAGTTTCAGTTTGATTTAGCAACAAGAAAACAATGTCTCGCCGAAACGATAGTTCGAGAAGACATCGCAAATCACGTGCTGTCAAAAATGATCACGAATATCCGTTGGTTTCGTTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTTCACAAACTGGGAAGAGT</pcr_primer_p1>
		<pcr_primer_p2>AGTTCTCCTTTTGTGTGATTGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATATTTCACAAACTGGGAAGAGTTTGCAAAGGCTGCTGAGAGACTTCACAGTGCTAATCCAGAGAAGTGTAGGTTCGTAGAAAAATCCATCATCAAGAAAAAAACGACTAGGCTAAATGAGCAGATTTTGAGCTCATTTTTCAATTAAATAATTATTCCCAATACCTAAAAAAATATTTTTTTCTTCCAATAATTCTTCAATCCCACCTTCAGATTCGTCACCAAGTACAATCACACAAAAGGAGAACT</canonical_amplicon>
		<polymorphic_amplicon>ATATTTCACAAACTGGGAAGAGTTTGCAAAGGCTGCTGAGAGACTTCACAGTGCTAATCCAGAGAAGTGTAGGTTCGTAGAAAAATCCATCATCAAGAAAAAAACGACTAGGCTAAATGAGCAGATTTTGAGCTCATTTTTCAATTAAATAATTATTCCCARTACCTAAAAAAATATTTTTTTCTTCCAATAATTCTTCAATCCCACCTTCAGATTCGTCACCAAGTACAATCACACAAAAGGAGAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18016</snp_id>
        <super_contig>c010901044.Contig1</super_contig>
        <contig_pos>17632</contig_pos>
        <strand>+</strand>
        <context>ACAAATTTTT[A/T]AAACTTTTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAACCGGGGATTTTCAACAAAATGATTTCTAAGTCGGATAACAAATTTTT</left_flank>
        <right_flank>AAACTTTTCCAGATATAGAAAATTGTAATTTTAATGAACAATTTGATCTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATCAAAAATGTGAGAAGATAGTGAGACGAAAAAACATTCGGCCTTCTCCGACGGATCGGGCCTTCTTCCCCGACGAAGATGAATGCGAATCTATTAGCGCCCCAACGCAATCGCCGCGCGACAGATAAATGACGACGAGTGACAGTTCGACAGCGCGAAGAACACGGCGCCCGTTGGGGACAACACACACGGGTTACGGTACACGAATTCCTCAGATTTTGTCTTCCTTGTGACTTTTAGAGGTGGTCTTGTGAAAAAAGAGAAGAGCGGAATTTTTCAAGGTTTTCGAGAGATAGGAATTGGGAATTTTTATGGTTTGGTACTGATGTGAAACTGATCAAAATAAGAAAATCAAAATATGATAAATTGGGAAATAGAAGCAAAACTAGGAAAGGATCAAATTAGAGAGGTCGAATCAGAAAACAATTTATGCTTTGAACATTTAGAAAACCGGGGATTTTCAACAAAATGATTTCTAAGTCGGATAACAAATTTTTAAAACTTTTCCAGATATAGAAAATTGTAATTTTAATGAACAATTTGATCTCTATCTTACGTTTAGGCTTTCAACTTTATACCTGAATTTCGATTTTTGACTAGAAAATACAAACTCATACAACTTCCAATAAAGTGCCTAACATAGGCCTACCCAACAATAGCCATATCTCTTGTAAATCACAATTTTTTTGTAATTTTAAGCACAAAACCATGATCTGCATCCAAAGTTACCCCAGTAATAAAATTTGGGTAATTATGTTCTTGAAACCGGCCAAATGGCAGTACGAAAACTAAAAAATCGGTTTCCGCAGACAAAACAAAAGTATAAAGCCACCATCGTTGAGAACCCCAGAAAACCGAACCTGGTGAACAAAAAATCATGATTTGAATTCCAAAAATTGCTTTATCTGAGTCCGTTGGGCCGTTGTTTTAAGCCAATTTCAATCGAACCGTCTGAATCGTCAGCTGGAGCATTGGTAGTTCTTATTAGAGGATTTCAA</canonical>
            <polymorphic>AAATCAAAAATGTGAGAAGATAGTGAGACGAAAAAACATTCGGCCTTCTCCGACGGATCGGGCCTTCTTCCCCGACGAAGATGAATGCGAATCTATTAGCGCCCCAACGCAATCGCCGCGCGACAGATAAATGACGACGAGTGACAGTTCGACAGCGCGAAGAACACGGCGCCCGTTGGGGACAACACACACGGGTTACGGTACACGAATTCCTCAGATTTTGTCTTCCTTGTGACTTTTAGAGGTGGTCTTGTGAAAAAAGAGAAGAGCGGAATTTTTCAAGGTTTTCGAGAGATAGGAATTGGGAATTTTTATGGTTTGGTACTGATGTGAAACTGATCAAAATAAGAAAATCAAAATATGATAAATTGGGAAATAGAAGCAAAACTAGGAAAGGATCAAATTAGAGAGGTCGAATCAGAAAACAATTTATGCTTTGAACATTTAGAAAACCGGGGATTTTCAACAAAATGATTTCTAAGTCGGATAACAAATTTTTWAAACTTTTCCAGATATAGAAAATTGTAATTTTAATGAACAATTTGATCTCTATCTTACGTTTAGGCTTTCAACTTTATACCTGAATTTCGATTTTTGACTAGAAAATACAAACTCATACAACTTCCAATAAAGTGCCTAACATAGGCCTACCCAACAATAGCCATATCTCTTGTAAATCACAATTTTTTTGTAATTTTAAGCACAAAACCATGATCTGCATCCAAAGTTACCCCAGTAATAAAATTTGGGTAATTATGTTCTTGAAACCGGCCAAATGGCAGTACGAAAACTAAAAAATCGGTTTCCGCAGACAAAACAAAAGTATAAAGCCACCATCGTTGAGAACCCCAGAAAACCGAACCTGGTGAACAAAAAATCATGATTTGAATTCCAAAAATTGCTTTATCTGAGTCCGTTGGGCCGTTGTTTTAAGCCAATTTCAATCGAACCGTCTGAATCGTCAGCTGGAGCATTGGTAGTTCTTATTAGAGGATTTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>498 233 166 70 33</canonical_bands>
                <polymorphic_bands>531 233 166 70</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTGATGTGAAACTGATCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGAAAGCCTAAACGTAAGATAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACTGATGTGAAACTGATCAAAATAAGAAAATCAAAATATGATAAATTGGGAAATAGAAGCAAAACTAGGAAAGGATCAAATTAGAGAGGTCGAATCAGAAAACAATTTATGCTTTGAACATTTAGAAAACCGGGGATTTTCAACAAAATGATTTCTAAGTCGGATAACAAATTTTTAAAACTTTTCCAGATATAGAAAATTGTAATTTTAATGAACAATTTGATCTCTATCTTACGTTTAGGCTTTCA</canonical_amplicon>
		<polymorphic_amplicon>ACTGATGTGAAACTGATCAAAATAAGAAAATCAAAATATGATAAATTGGGAAATAGAAGCAAAACTAGGAAAGGATCAAATTAGAGAGGTCGAATCAGAAAACAATTTATGCTTTGAACATTTAGAAAACCGGGGATTTTCAACAAAATGATTTCTAAGTCGGATAACAAATTTTTWAAACTTTTCCAGATATAGAAAATTGTAATTTTAATGAACAATTTGATCTCTATCTTACGTTTAGGCTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18017</snp_id>
        <super_contig>c010901044.Contig1</super_contig>
        <contig_pos>19684</contig_pos>
        <strand>+</strand>
        <context>TCTGTTRTWT[A/T]GCTCTTTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGAATTTGAGACTGCTAGAAAAAATGAAAATAGTTGTTTCTGTTGTTT</left_flank>
        <right_flank>GCTCTTTGAAAATATTTTAATTAATCACAAAGCTCTCAGACTTGAACACA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTCTTTGACAAGATTGGGAACTATTCTAAGCTAGTATTCCAGCAGTGTGTAACCCCTATGCCTTACTCTGAAAAGAAAGTTGGAACCAGAATTTGTTTCTTTTTTTCACGGTCGACTGAGAAAAATTTGAAAAAAAGTTTTCGAAAAAGTTTTTCTAAATTTTCTAGAAATCTTAGGATGCTCCATTATTTTTCATTATCGCACTTCAAAACCGCTCAAAAATGTTAGAGAGTTTAGAAGCATCGTAACTATGAAATTGGTAGTGTATTTCAAAGATGTCTGATATTGGCCCAATGTTTAAAACATGAACATGTGTTTTCCTTTTAAAATTTTTTAACGAACAACCAGTTTTTTTCAAAAATTGACATCTCCTGATTGGGAAATTAGGGTATCATGATACCTTCAATTTTGCTCAAAATCTTGCAGTGTTCCGCAAAAAATACAAATTTTGAATTTGAGACTGCTAGAAAAAATGAAAATAGTTGTTTCTGTTGTTTTGCTCTTTGAAAATATTTTAATTAATCACAAAGCTCTCAGACTTGAACACAAAATGCTCCTCGACGCAGTTCGATCCCCGATCAAAGTTTCATACATCGGAGAAGTCACCTACGCCTATCCAGCAATTTACACTGTCCTCTGTCAGATTGGTATGTGGGTTTTTTCTGGTTTCCCTAATGGATTTTTGATTAATGATGAGTGCTTTCTGGCATCTTTTTCTCATTTTCTTTTTGTGGGAACCTCCTATCAATTATCTTGGAACAACTTTCGAGATTTTGTGGAGTGCAAAATGAGAAGAAGAGAGAGATGAGAGCGTTTTTTCCCATCAATAAATCTTCCAGGAATCGCCAATTTCCCGTTTGACGATCAAGTGTGCAAAATTCGAGTAAGTCGTATGAACTTTGACCTCATGACAAAAACTCTAAACTTTTCAGTTCGCTTCATGGGCCTATGATGAGGATAAGATATTGCTCAACGCGTCACACAAACCGCTTCTCAAG</canonical>
            <polymorphic>AGCTCTTTGACAAGATTGGGAACTATTCTAAGCTAGTATTCCAGCAGTGTGTAACCCCTATGCCTTACTCTGAAAAGAAAGTTGGAACCAGAATTTGTTTCTTTTTTTCACGGTCGACTGAGAAAAATTTGAAAAAAAGTTTTCGAAAAAGTTTTTCTAAATTTTCTAGAAATCTTAGGATGCTCCATTATTTTTCATTATCGCACTTCAAAACCGCTCAAAAATGTTAGAGAGTTTAGAAGCATCGTAACTATGAAATTGGTAGTGTATTTCAAAGATGTCTGATATTGGCCCAATGTTTAAAACATGAACATGTGTTTTCCTTTTAAAATTTTTTAACGAACAACCAGTTTTTTTCAAAAATTGACATCTCCTGATTGGGAAATTAGGGTATCATGATACCTTCAATTTTGCTCAAAATCTTGCAGTGTTCCGCAAAAAATACAAATTTTGAATTTGAGACTGCTAGAAAAAATGAAAATAGTTGTTTCTGTTGTTTWGCTCTTTGAAAATATTTTAATTAATCACAAAGCTCTCAGACTTGAACACAAAATGCTCCTCGACGCAGTTCGATCCCCGATCAAAGTTTCATACATCGGAGAAGTCACCTACGCCTATCCAGCAATTTACACTGTCCTCTGTCAGATTGGTATGTGGGTTTTTTCTGGTTTCCCTAATGGATTTTTGATTAATGATGAGTGCTTTCTGGCATCTTTTTCTCATTTTCTTTTTGTGGGAACCTCCTATCAATTATCTTGGAACAACTTTCGAGATTTTGTGGAGTGCAAAATGAGAAGAAGAGAGAGATGAGAGCGTTTTTTCCCATCAATAAATCTTCCAGGAATCGCCAATTTCCCGTTTGACGATCAAGTGTGCAAAATTCGAGTAAGTCGTATGAACTTTGACCTCATGACAAAAACTCTAAACTTTTCAGTTCGCTTCATGGGCCTATGATGAGGATAAGATATTGCTCAACGCGTCACACAAACCGCTTCTCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTTGAATTTGAGACTGCTA</pcr_primer_p1>
		<pcr_primer_p2>TCATTAATCAAAAATCCATTAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTTTGAATTTGAGACTGCTAGAAAAAATGAAAATAGTTGTTTCTGTTGTTTTGCTCTTTGAAAATATTTTAATTAATCACAAAGCTCTCAGACTTGAACACAAAATGCTCCTCGACGCAGTTCGATCCCCGATCAAAGTTTCATACATCGGAGAAGTCACCTACGCCTATCCAGCAATTTACACTGTCCTCTGTCAGATTGGTATGTGGGTTTTTTCTGGTTTCCCTAATGGATTTTTGATTAATGA</canonical_amplicon>
		<polymorphic_amplicon>AAATTTTGAATTTGAGACTGCTAGAAAAAATGAAAATAGTTGTTTCTGTTGTTTWGCTCTTTGAAAATATTTTAATTAATCACAAAGCTCTCAGACTTGAACACAAAATGCTCCTCGACGCAGTTCGATCCCCGATCAAAGTTTCATACATCGGAGAAGTCACCTACGCCTATCCAGCAATTTACACTGTCCTCTGTCAGATTGGTATGTGGGTTTTTTCTGGTTTCCCTAATGGATTTTTGATTAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18018</snp_id>
        <super_contig>c010901044.Contig1</super_contig>
        <contig_pos>19682</contig_pos>
        <strand>+</strand>
        <context>TTTCTGTTRT[A/T]TWGCTCTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTGAATTTGAGACTGCTAGAAAAAATGAAAATAGTTGTTTCTGTTGT</left_flank>
        <right_flank>TTGCTCTTTGAAAATATTTTAATTAATCACAAAGCTCTCAGACTTGAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGCTCTTTGACAAGATTGGGAACTATTCTAAGCTAGTATTCCAGCAGTGTGTAACCCCTATGCCTTACTCTGAAAAGAAAGTTGGAACCAGAATTTGTTTCTTTTTTTCACGGTCGACTGAGAAAAATTTGAAAAAAAGTTTTCGAAAAAGTTTTTCTAAATTTTCTAGAAATCTTAGGATGCTCCATTATTTTTCATTATCGCACTTCAAAACCGCTCAAAAATGTTAGAGAGTTTAGAAGCATCGTAACTATGAAATTGGTAGTGTATTTCAAAGATGTCTGATATTGGCCCAATGTTTAAAACATGAACATGTGTTTTCCTTTTAAAATTTTTTAACGAACAACCAGTTTTTTTCAAAAATTGACATCTCCTGATTGGGAAATTAGGGTATCATGATACCTTCAATTTTGCTCAAAATCTTGCAGTGTTCCGCAAAAAATACAAATTTTGAATTTGAGACTGCTAGAAAAAATGAAAATAGTTGTTTCTGTTGTTTTGCTCTTTGAAAATATTTTAATTAATCACAAAGCTCTCAGACTTGAACACAAAATGCTCCTCGACGCAGTTCGATCCCCGATCAAAGTTTCATACATCGGAGAAGTCACCTACGCCTATCCAGCAATTTACACTGTCCTCTGTCAGATTGGTATGTGGGTTTTTTCTGGTTTCCCTAATGGATTTTTGATTAATGATGAGTGCTTTCTGGCATCTTTTTCTCATTTTCTTTTTGTGGGAACCTCCTATCAATTATCTTGGAACAACTTTCGAGATTTTGTGGAGTGCAAAATGAGAAGAAGAGAGAGATGAGAGCGTTTTTTCCCATCAATAAATCTTCCAGGAATCGCCAATTTCCCGTTTGACGATCAAGTGTGCAAAATTCGAGTAAGTCGTATGAACTTTGACCTCATGACAAAAACTCTAAACTTTTCAGTTCGCTTCATGGGCCTATGATGAGGATAAGATATTGCTCAACGCGTCACACAAACCGCTTCTCA</canonical>
            <polymorphic>ATAGCTCTTTGACAAGATTGGGAACTATTCTAAGCTAGTATTCCAGCAGTGTGTAACCCCTATGCCTTACTCTGAAAAGAAAGTTGGAACCAGAATTTGTTTCTTTTTTTCACGGTCGACTGAGAAAAATTTGAAAAAAAGTTTTCGAAAAAGTTTTTCTAAATTTTCTAGAAATCTTAGGATGCTCCATTATTTTTCATTATCGCACTTCAAAACCGCTCAAAAATGTTAGAGAGTTTAGAAGCATCGTAACTATGAAATTGGTAGTGTATTTCAAAGATGTCTGATATTGGCCCAATGTTTAAAACATGAACATGTGTTTTCCTTTTAAAATTTTTTAACGAACAACCAGTTTTTTTCAAAAATTGACATCTCCTGATTGGGAAATTAGGGTATCATGATACCTTCAATTTTGCTCAAAATCTTGCAGTGTTCCGCAAAAAATACAAATTTTGAATTTGAGACTGCTAGAAAAAATGAAAATAGTTGTTTCTGTTGTWTTGCTCTTTGAAAATATTTTAATTAATCACAAAGCTCTCAGACTTGAACACAAAATGCTCCTCGACGCAGTTCGATCCCCGATCAAAGTTTCATACATCGGAGAAGTCACCTACGCCTATCCAGCAATTTACACTGTCCTCTGTCAGATTGGTATGTGGGTTTTTTCTGGTTTCCCTAATGGATTTTTGATTAATGATGAGTGCTTTCTGGCATCTTTTTCTCATTTTCTTTTTGTGGGAACCTCCTATCAATTATCTTGGAACAACTTTCGAGATTTTGTGGAGTGCAAAATGAGAAGAAGAGAGAGATGAGAGCGTTTTTTCCCATCAATAAATCTTCCAGGAATCGCCAATTTCCCGTTTGACGATCAAGTGTGCAAAATTCGAGTAAGTCGTATGAACTTTGACCTCATGACAAAAACTCTAAACTTTTCAGTTCGCTTCATGGGCCTATGATGAGGATAAGATATTGCTCAACGCGTCACACAAACCGCTTCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTTGAATTTGAGACTGCTA</pcr_primer_p1>
		<pcr_primer_p2>TCATTAATCAAAAATCCATTAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTTTGAATTTGAGACTGCTAGAAAAAATGAAAATAGTTGTTTCTGTTGTTTTGCTCTTTGAAAATATTTTAATTAATCACAAAGCTCTCAGACTTGAACACAAAATGCTCCTCGACGCAGTTCGATCCCCGATCAAAGTTTCATACATCGGAGAAGTCACCTACGCCTATCCAGCAATTTACACTGTCCTCTGTCAGATTGGTATGTGGGTTTTTTCTGGTTTCCCTAATGGATTTTTGATTAATGA</canonical_amplicon>
		<polymorphic_amplicon>AAATTTTGAATTTGAGACTGCTAGAAAAAATGAAAATAGTTGTTTCTGTTGTWTTGCTCTTTGAAAATATTTTAATTAATCACAAAGCTCTCAGACTTGAACACAAAATGCTCCTCGACGCAGTTCGATCCCCGATCAAAGTTTCATACATCGGAGAAGTCACCTACGCCTATCCAGCAATTTACACTGTCCTCTGTCAGATTGGTATGTGGGTTTTTTCTGGTTTCCCTAATGGATTTTTGATTAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18019</snp_id>
        <super_contig>c010901044.Contig1</super_contig>
        <contig_pos>19680</contig_pos>
        <strand>+</strand>
        <context>TGTTTCTGTT[A/G]TWTWGCTCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTTTGAATTTGAGACTGCTAGAAAAAATGAAAATAGTTGTTTCTGTT</left_flank>
        <right_flank>TTTTGCTCTTTGAAAATATTTTAATTAATCACAAAGCTCTCAGACTTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATAGCTCTTTGACAAGATTGGGAACTATTCTAAGCTAGTATTCCAGCAGTGTGTAACCCCTATGCCTTACTCTGAAAAGAAAGTTGGAACCAGAATTTGTTTCTTTTTTTCACGGTCGACTGAGAAAAATTTGAAAAAAAGTTTTCGAAAAAGTTTTTCTAAATTTTCTAGAAATCTTAGGATGCTCCATTATTTTTCATTATCGCACTTCAAAACCGCTCAAAAATGTTAGAGAGTTTAGAAGCATCGTAACTATGAAATTGGTAGTGTATTTCAAAGATGTCTGATATTGGCCCAATGTTTAAAACATGAACATGTGTTTTCCTTTTAAAATTTTTTAACGAACAACCAGTTTTTTTCAAAAATTGACATCTCCTGATTGGGAAATTAGGGTATCATGATACCTTCAATTTTGCTCAAAATCTTGCAGTGTTCCGCAAAAAATACAAATTTTGAATTTGAGACTGCTAGAAAAAATGAAAATAGTTGTTTCTGTTGTTTTGCTCTTTGAAAATATTTTAATTAATCACAAAGCTCTCAGACTTGAACACAAAATGCTCCTCGACGCAGTTCGATCCCCGATCAAAGTTTCATACATCGGAGAAGTCACCTACGCCTATCCAGCAATTTACACTGTCCTCTGTCAGATTGGTATGTGGGTTTTTTCTGGTTTCCCTAATGGATTTTTGATTAATGATGAGTGCTTTCTGGCATCTTTTTCTCATTTTCTTTTTGTGGGAACCTCCTATCAATTATCTTGGAACAACTTTCGAGATTTTGTGGAGTGCAAAATGAGAAGAAGAGAGAGATGAGAGCGTTTTTTCCCATCAATAAATCTTCCAGGAATCGCCAATTTCCCGTTTGACGATCAAGTGTGCAAAATTCGAGTAAGTCGTATGAACTTTGACCTCATGACAAAAACTCTAAACTTTTCAGTTCGCTTCATGGGCCTATGATGAGGATAAGATATTGCTCAACGCGTCACACAAACCGCTTCT</canonical>
            <polymorphic>AGATAGCTCTTTGACAAGATTGGGAACTATTCTAAGCTAGTATTCCAGCAGTGTGTAACCCCTATGCCTTACTCTGAAAAGAAAGTTGGAACCAGAATTTGTTTCTTTTTTTCACGGTCGACTGAGAAAAATTTGAAAAAAAGTTTTCGAAAAAGTTTTTCTAAATTTTCTAGAAATCTTAGGATGCTCCATTATTTTTCATTATCGCACTTCAAAACCGCTCAAAAATGTTAGAGAGTTTAGAAGCATCGTAACTATGAAATTGGTAGTGTATTTCAAAGATGTCTGATATTGGCCCAATGTTTAAAACATGAACATGTGTTTTCCTTTTAAAATTTTTTAACGAACAACCAGTTTTTTTCAAAAATTGACATCTCCTGATTGGGAAATTAGGGTATCATGATACCTTCAATTTTGCTCAAAATCTTGCAGTGTTCCGCAAAAAATACAAATTTTGAATTTGAGACTGCTAGAAAAAATGAAAATAGTTGTTTCTGTTRTTTTGCTCTTTGAAAATATTTTAATTAATCACAAAGCTCTCAGACTTGAACACAAAATGCTCCTCGACGCAGTTCGATCCCCGATCAAAGTTTCATACATCGGAGAAGTCACCTACGCCTATCCAGCAATTTACACTGTCCTCTGTCAGATTGGTATGTGGGTTTTTTCTGGTTTCCCTAATGGATTTTTGATTAATGATGAGTGCTTTCTGGCATCTTTTTCTCATTTTCTTTTTGTGGGAACCTCCTATCAATTATCTTGGAACAACTTTCGAGATTTTGTGGAGTGCAAAATGAGAAGAAGAGAGAGATGAGAGCGTTTTTTCCCATCAATAAATCTTCCAGGAATCGCCAATTTCCCGTTTGACGATCAAGTGTGCAAAATTCGAGTAAGTCGTATGAACTTTGACCTCATGACAAAAACTCTAAACTTTTCAGTTCGCTTCATGGGCCTATGATGAGGATAAGATATTGCTCAACGCGTCACACAAACCGCTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAATTGACATCTCCTGATT</pcr_primer_p1>
		<pcr_primer_p2>GACTTCTCCGATGTATGAAACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATTGACATCTCCTGATTGGGAAATTAGGGTATCATGATACCTTCAATTTTGCTCAAAATCTTGCAGTGTTCCGCAAAAAATACAAATTTTGAATTTGAGACTGCTAGAAAAAATGAAAATAGTTGTTTCTGTTGTTTTGCTCTTTGAAAATATTTTAATTAATCACAAAGCTCTCAGACTTGAACACAAAATGCTCCTCGACGCAGTTCGATCCCCGATCAAAGTTTCATACATCGGAGAAGTC</canonical_amplicon>
		<polymorphic_amplicon>CAAAAATTGACATCTCCTGATTGGGAAATTAGGGTATCATGATACCTTCAATTTTGCTCAAAATCTTGCAGTGTTCCGCAAAAAATACAAATTTTGAATTTGAGACTGCTAGAAAAAATGAAAATAGTTGTTTCTGTTRTTTTGCTCTTTGAAAATATTTTAATTAATCACAAAGCTCTCAGACTTGAACACAAAATGCTCCTCGACGCAGTTCGATCCCCGATCAAAGTTTCATACATCGGAGAAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18020</snp_id>
        <super_contig>c010901044.Contig1</super_contig>
        <contig_pos>19531</contig_pos>
        <strand></strand>
        <context>TAACGAACAA[C/A]CAGTTTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TGTTTAAAACATGAACATGTGTTTTCCTTTTAAAATTTTTTAACGAACAA</left_flank>
        <right_flank>CAGTTTTTTTCAAAAATTGACATCTCCTGATTGGGAAATTAGGGTATCAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAAGAGTTGACATTTCTCATAACATCGAATTGGTGCACATTATTGGAATTAACGAGTTGAATCAAAATATGCAAGTTCTTGTGTACATTATTCAGGTAAATTTTGTGATGAGGTGACCGAGAAAATACGGTTTTACTAGCAATGGAAAGATAGCTCTTTGACAAGATTGGGAACTATTCTAAGCTAGTATTCCAGCAGTGTGTAACCCCTATGCCTTACTCTGAAAAGAAAGTTGGAACCAGAATTTGTTTCTTTTTTTCACGGTCGACTGAGAAAAATTTGAAAAAAAGTTTTCGAAAAAGTTTTTCTAAATTTTCTAGAAATCTTAGGATGCTCCATTATTTTTCATTATCGCACTTCAAAACCGCTCAAAAATGTTAGAGAGTTTAGAAGCATCGTAACTATGAAATTGGTAGTGTATTTCAAAGATGTCTGATATTGGCCCAATGTTTAAAACATGAACATGTGTTTTCCTTTTAAAATTTTTTAACGAACAACCAGTTTTTTTCAAAAATTGACATCTCCTGATTGGGAAATTAGGGTATCATGATACCTTCAATTTTGCTCAAAATCTTGCAGTGTTCCGCAAAAAATACAAATTTTGAATTTGAGACTGCTAGAAAAAATGAAAATAGTTGTTTCTGTTGTTTTGCTCTTTGAAAATATTTTAATTAATCACAAAGCTCTCAGACTTGAACACAAAATGCTCCTCGACGCAGTTCGATCCCCGATCAAAGTTTCATACATCGGAGAAGTCACCTACGCCTATCCAGCAATTTACACTGTCCTCTGTCAGATTGGTATGTGGGTTTTTTCTGGTTTCCCTAATGGATTTTTGATTAATGATGAGTGCTTTCTGGCATCTTTTTCTCATTTTCTTTTTGTGGGAACCTCCTATCAATTATCTTGGAACAACTTTCGAGATTTTGTGGAGTGCAAAATGAGAAGAAGAGAGAGATGAGAGCGTTTTTTCCCATCAATAAATCTTCCAGGAATCG</canonical>
            <polymorphic>TGGAAGAGTTGACATTTCTCATAACATCGAATTGGTGCACATTATTGGAATTAACGAGTTGAATCAAAATATGCAAGTTCTTGTGTACATTATTCAGGTAAATTTTGTGATGAGGTGACCGAGAAAATACGGTTTTACTAGCAATGGAAAGATAGCTCTTTGACAAGATTGGGAACTATTCTAAGCTAGTATTCCAGCAGTGTGTAACCCCTATGCCTTACTCTGAAAAGAAAGTTGGAACCAGAATTTGTTTCTTTTTTTCACGGTCGACTGAGAAAAATTTGAAAAAAAGTTTTCGAAAAAGTTTTTCTAAATTTTCTAGAAATCTTAGGATGCTCCATTATTTTTCATTATCGCACTTCAAAACCGCTCAAAAATGTTAGAGAGTTTAGAAGCATCGTAACTATGAAATTGGTAGTGTATTTCAAAGATGTCTGATATTGGCCCAATGTTTAAAACATGAACATGTGTTTTCCTTTTAAAATTTTTTAACGAACAAMCAGTTTTTTTCAAAAATTGACATCTCCTGATTGGGAAATTAGGGTATCATGATACCTTCAATTTTGCTCAAAATCTTGCAGTGTTCCGCAAAAAATACAAATTTTGAATTTGAGACTGCTAGAAAAAATGAAAATAGTTGTTTCTGTTGTTTTGCTCTTTGAAAATATTTTAATTAATCACAAAGCTCTCAGACTTGAACACAAAATGCTCCTCGACGCAGTTCGATCCCCGATCAAAGTTTCATACATCGGAGAAGTCACCTACGCCTATCCAGCAATTTACACTGTCCTCTGTCAGATTGGTATGTGGGTTTTTTCTGGTTTCCCTAATGGATTTTTGATTAATGATGAGTGCTTTCTGGCATCTTTTTCTCATTTTCTTTTTGTGGGAACCTCCTATCAATTATCTTGGAACAACTTTCGAGATTTTGTGGAGTGCAAAATGAGAAGAAGAGAGAGATGAGAGCGTTTTTTCCCATCAATAAATCTTCCAGGAATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCTTAGGATGCTCCATTATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAGCAAAATTGAAGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCTTAGGATGCTCCATTATTTTTCATTATCGCACTTCAAAACCGCTCAAAAATGTTAGAGAGTTTAGAAGCATCGTAACTATGAAATTGGTAGTGTATTTCAAAGATGTCTGATATTGGCCCAATGTTTAAAACATGAACATGTGTTTTCCTTTTAAAATTTTTTAACGAACAACCAGTTTTTTTCAAAAATTGACATCTCCTGATTGGGAAATTAGGGTATCATGATACCTTCAATTTTGCTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>AATCTTAGGATGCTCCATTATTTTTCATTATCGCACTTCAAAACCGCTCAAAAATGTTAGAGAGTTTAGAAGCATCGTAACTATGAAATTGGTAGTGTATTTCAAAGATGTCTGATATTGGCCCAATGTTTAAAACATGAACATGTGTTTTCCTTTTAAAATTTTTTAACGAACAAMCAGTTTTTTTCAAAAATTGACATCTCCTGATTGGGAAATTAGGGTATCATGATACCTTCAATTTTGCTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18021</snp_id>
        <super_contig>c010901085.Contig1</super_contig>
        <contig_pos>83684</contig_pos>
        <strand></strand>
        <context>GTCAGATTCT[G/A]CAGAATTGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGAATCTGAATATCAAAACGCAAAAAGTGGATATCGATTTGTCAGATTCT</left_flank>
        <right_flank>CAGAATTGTCAACGCTCATAGCGGGCTCATCATTGCATAGGAAACGTCGA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATTGGAATCTTTTTGGCTTCTGCCCGTTTTTGCCTAGGCCTATTTAAAATGGAATATTCCCGAATTCCGTTGTCTTTTTTACTGTTAAAAATCGAATTATTTTCAGTCTTCTGGATGACTTGGCTAATTTATGTGTTGAGTCTTCGGAAACTAAGGAAGCCTGCCTGGATGCTATCAATCGAATGATTTCCTCCAGTATATCTTGTCACACTCTCCAACTCAATATATCGGAAAATAGAAAGAAGAGAGATCCACCTCAAAAGAAAACTAGCACTATGCCGATGCCAAGGGAAATTTTGGATCTGATACTTGCAAGATGGAATGTGTATCATGTAATTCTGAAGATTGTGTATAAAACCCGCCAAGATGTACAGTTGGGAAATTGGACTCGGAAAAATTGGCTCACAAAATTCCGTTTCCATAACCAATATGACACTGTCACCGTGTCGAATCTGAATATCAAAACGCAAAAAGTGGATATCGATTTGTCAGATTCTGCAGAATTGTCAACGCTCATAGCGGGCTCATCATTGCATAGGAAACGTCGAAAGGATAGATATCAAAACTTCCTGACCAATGTTAGAAGGATTTTTCGAACAGACAGAATTTCGATTAAATTCTCTCATTGGAATTACGATATGTTTCAAGCTCCACTTCATATGATCGTCCATCGTCTATTTGAAAACATCTTCAAAACGGACTTCAACAATTTAAATATAGATATTCATCTTTTTCCAAGCGAGAGACGGGAATTCTATTCGCATCTAATCAATAGACTTCCTTCACTCACTACCCACACATTGCGTATTTCACAATGTTACACCAAGATATGATTATTTTCTCACTATCAGAAATGGAGGATGAGGATGATATGGAGGATGAGGATGATGTGGAGGGTGAGGATGATGTGGAGGATGAGTGAAAACGAAACCAAAAAATAAAAATGACCAATTGTAAACTTTAAGTTTGGTAAATTTATTCACATGTTAATATGAGTT</canonical>
            <polymorphic>TTATTGGAATCTTTTTGGCTTCTGCCCGTTTTTGCCTAGGCCTATTTAAAATGGAATATTCCCGAATTCCGTTGTCTTTTTTACTGTTAAAAATCGAATTATTTTCAGTCTTCTGGATGACTTGGCTAATTTATGTGTTGAGTCTTCGGAAACTAAGGAAGCCTGCCTGGATGCTATCAATCGAATGATTTCCTCCAGTATATCTTGTCACACTCTCCAACTCAATATATCGGAAAATAGAAAGAAGAGAGATCCACCTCAAAAGAAAACTAGCACTATGCCGATGCCAAGGGAAATTTTGGATCTGATACTTGCAAGATGGAATGTGTATCATGTAATTCTGAAGATTGTGTATAAAACCCGCCAAGATGTACAGTTGGGAAATTGGACTCGGAAAAATTGGCTCACAAAATTCCGTTTCCATAACCAATATGACACTGTCACCGTGTCGAATCTGAATATCAAAACGCAAAAAGTGGATATCGATTTGTCAGATTCTRCAGAATTGTCAACGCTCATAGCGGGCTCATCATTGCATAGGAAACGTCGAAAGGATAGATATCAAAACTTCCTGACCAATGTTAGAAGGATTTTTCGAACAGACAGAATTTCGATTAAATTCTCTCATTGGAATTACGATATGTTTCAAGCTCCACTTCATATGATCGTCCATCGTCTATTTGAAAACATCTTCAAAACGGACTTCAACAATTTAAATATAGATATTCATCTTTTTCCAAGCGAGAGACGGGAATTCTATTCGCATCTAATCAATAGACTTCCTTCACTCACTACCCACACATTGCGTATTTCACAATGTTACACCAAGATATGATTATTTTCTCACTATCAGAAATGGAGGATGAGGATGATATGGAGGATGAGGATGATGTGGAGGGTGAGGATGATGTGGAGGATGAGTGAAAACGAAACCAAAAAATAAAAATGACCAATTGTAAACTTTAAGTTTGGTAAATTTATTCACATGTTAATATGAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAGNNNCTG</site>
                <isoschizomers>
                    <enzyme>AlwNI</enzyme>
                    <enzyme>CaiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTGCAG</site>
                <isoschizomers>
                    <enzyme>BloHII</enzyme>
                    <enzyme>BstMAI</enzyme>
                    <enzyme>PstI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>465 314 186 35</canonical_bands>
                <polymorphic_bands>465 314 221</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGATGGAATGTGTATCATGT</pcr_primer_p1>
		<pcr_primer_p2>GATATCTATCCTTTCGACGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAGATGGAATGTGTATCATGTAATTCTGAAGATTGTGTATAAAACCCGCCAAGATGTACAGTTGGGAAATTGGACTCGGAAAAATTGGCTCACAAAATTCCGTTTCCATAACCAATATGACACTGTCACCGTGTCGAATCTGAATATCAAAACGCAAAAAGTGGATATCGATTTGTCAGATTCTGCAGAATTGTCAACGCTCATAGCGGGCTCATCATTGCATAGGAAACGTCGAAAGGATAGATATC</canonical_amplicon>
		<polymorphic_amplicon>CAAGATGGAATGTGTATCATGTAATTCTGAAGATTGTGTATAAAACCCGCCAAGATGTACAGTTGGGAAATTGGACTCGGAAAAATTGGCTCACAAAATTCCGTTTCCATAACCAATATGACACTGTCACCGTGTCGAATCTGAATATCAAAACGCAAAAAGTGGATATCGATTTGTCAGATTCTRCAGAATTGTCAACGCTCATAGCGGGCTCATCATTGCATAGGAAACGTCGAAAGGATAGATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18022</snp_id>
        <super_contig>c010901085.Contig1</super_contig>
        <contig_pos>83797</contig_pos>
        <strand></strand>
        <context>ACAGAATTTC[G/A]ATTAAATTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAAAACTTCCTGACCAATGTTAGAAGGATTTTTCGAACAGACAGAATTTC</left_flank>
        <right_flank>ATTAAATTCTCTCATTGGAATTACGATATGTTTCAAGCTCCACTTCATAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGATGACTTGGCTAATTTATGTGTTGAGTCTTCGGAAACTAAGGAAGCCTGCCTGGATGCTATCAATCGAATGATTTCCTCCAGTATATCTTGTCACACTCTCCAACTCAATATATCGGAAAATAGAAAGAAGAGAGATCCACCTCAAAAGAAAACTAGCACTATGCCGATGCCAAGGGAAATTTTGGATCTGATACTTGCAAGATGGAATGTGTATCATGTAATTCTGAAGATTGTGTATAAAACCCGCCAAGATGTACAGTTGGGAAATTGGACTCGGAAAAATTGGCTCACAAAATTCCGTTTCCATAACCAATATGACACTGTCACCGTGTCGAATCTGAATATCAAAACGCAAAAAGTGGATATCGATTTGTCAGATTCTGCAGAATTGTCAACGCTCATAGCGGGCTCATCATTGCATAGGAAACGTCGAAAGGATAGATATCAAAACTTCCTGACCAATGTTAGAAGGATTTTTCGAACAGACAGAATTTCGATTAAATTCTCTCATTGGAATTACGATATGTTTCAAGCTCCACTTCATATGATCGTCCATCGTCTATTTGAAAACATCTTCAAAACGGACTTCAACAATTTAAATATAGATATTCATCTTTTTCCAAGCGAGAGACGGGAATTCTATTCGCATCTAATCAATAGACTTCCTTCACTCACTACCCACACATTGCGTATTTCACAATGTTACACCAAGATATGATTATTTTCTCACTATCAGAAATGGAGGATGAGGATGATATGGAGGATGAGGATGATGTGGAGGGTGAGGATGATGTGGAGGATGAGTGAAAACGAAACCAAAAAATAAAAATGACCAATTGTAAACTTTAAGTTTGGTAAATTTATTCACATGTTAATATGAGTTTCTTCTTGTTTTGTTAATTAAACTGCGTTTTTCCCCACCACGGTTTTCTCTAACAAACAACTTTTTCTGAAGATGACTTCGGAAATTTTTTACACATGAACATTGAAATTTAG</canonical>
            <polymorphic>TGGATGACTTGGCTAATTTATGTGTTGAGTCTTCGGAAACTAAGGAAGCCTGCCTGGATGCTATCAATCGAATGATTTCCTCCAGTATATCTTGTCACACTCTCCAACTCAATATATCGGAAAATAGAAAGAAGAGAGATCCACCTCAAAAGAAAACTAGCACTATGCCGATGCCAAGGGAAATTTTGGATCTGATACTTGCAAGATGGAATGTGTATCATGTAATTCTGAAGATTGTGTATAAAACCCGCCAAGATGTACAGTTGGGAAATTGGACTCGGAAAAATTGGCTCACAAAATTCCGTTTCCATAACCAATATGACACTGTCACCGTGTCGAATCTGAATATCAAAACGCAAAAAGTGGATATCGATTTGTCAGATTCTGCAGAATTGTCAACGCTCATAGCGGGCTCATCATTGCATAGGAAACGTCGAAAGGATAGATATCAAAACTTCCTGACCAATGTTAGAAGGATTTTTCGAACAGACAGAATTTCRATTAAATTCTCTCATTGGAATTACGATATGTTTCAAGCTCCACTTCATATGATCGTCCATCGTCTATTTGAAAACATCTTCAAAACGGACTTCAACAATTTAAATATAGATATTCATCTTTTTCCAAGCGAGAGACGGGAATTCTATTCGCATCTAATCAATAGACTTCCTTCACTCACTACCCACACATTGCGTATTTCACAATGTTACACCAAGATATGATTATTTTCTCACTATCAGAAATGGAGGATGAGGATGATATGGAGGATGAGGATGATGTGGAGGGTGAGGATGATGTGGAGGATGAGTGAAAACGAAACCAAAAAATAAAAATGACCAATTGTAAACTTTAAGTTTGGTAAATTTATTCACATGTTAATATGAGTTTCTTCTTGTTTTGTTAATTAAACTGCGTTTTTCCCCACCACGGTTTTCTCTAACAAACAACTTTTTCTGAAGATGACTTCGGAAATTTTTTACACATGAACATTGAAATTTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 268 69 64 48 34 16</canonical_bands>
                <polymorphic_bands>517 268 69 64 48 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATAGATATCAAAACTTCCTGACC</pcr_primer_p1>
		<pcr_primer_p2>AATGTGTGGGTAGTGAGTGAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GATAGATATCAAAACTTCCTGACCAATGTTAGAAGGATTTTTCGAACAGACAGAATTTCGATTAAATTCTCTCATTGGAATTACGATATGTTTCAAGCTCCACTTCATATGATCGTCCATCGTCTATTTGAAAACATCTTCAAAACGGACTTCAACAATTTAAATATAGATATTCATCTTTTTCCAAGCGAGAGACGGGAATTCTATTCGCATCTAATCAATAGACTTCCTTCACTCACTACCCACACATT</canonical_amplicon>
		<polymorphic_amplicon>GATAGATATCAAAACTTCCTGACCAATGTTAGAAGGATTTTTCGAACAGACAGAATTTCRATTAAATTCTCTCATTGGAATTACGATATGTTTCAAGCTCCACTTCATATGATCGTCCATCGTCTATTTGAAAACATCTTCAAAACGGACTTCAACAATTTAAATATAGATATTCATCTTTTTCCAAGCGAGAGACGGGAATTCTATTCGCATCTAATCAATAGACTTCCTTCACTCACTACCCACACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18023</snp_id>
        <super_contig>c010901085.Contig1</super_contig>
        <contig_pos>83830</contig_pos>
        <strand></strand>
        <context>ACGATATGTT[T/C]CAAGCTCCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CGAACAGACAGAATTTCGATTAAATTCTCTCATTGGAATTACGATATGTT</left_flank>
        <right_flank>CAAGCTCCACTTCATATGATCGTCCATCGTCTATTTGAAAACATCTTCAA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGAAACTAAGGAAGCCTGCCTGGATGCTATCAATCGAATGATTTCCTCCAGTATATCTTGTCACACTCTCCAACTCAATATATCGGAAAATAGAAAGAAGAGAGATCCACCTCAAAAGAAAACTAGCACTATGCCGATGCCAAGGGAAATTTTGGATCTGATACTTGCAAGATGGAATGTGTATCATGTAATTCTGAAGATTGTGTATAAAACCCGCCAAGATGTACAGTTGGGAAATTGGACTCGGAAAAATTGGCTCACAAAATTCCGTTTCCATAACCAATATGACACTGTCACCGTGTCGAATCTGAATATCAAAACGCAAAAAGTGGATATCGATTTGTCAGATTCTGCAGAATTGTCAACGCTCATAGCGGGCTCATCATTGCATAGGAAACGTCGAAAGGATAGATATCAAAACTTCCTGACCAATGTTAGAAGGATTTTTCGAACAGACAGAATTTCGATTAAATTCTCTCATTGGAATTACGATATGTTTCAAGCTCCACTTCATATGATCGTCCATCGTCTATTTGAAAACATCTTCAAAACGGACTTCAACAATTTAAATATAGATATTCATCTTTTTCCAAGCGAGAGACGGGAATTCTATTCGCATCTAATCAATAGACTTCCTTCACTCACTACCCACACATTGCGTATTTCACAATGTTACACCAAGATATGATTATTTTCTCACTATCAGAAATGGAGGATGAGGATGATATGGAGGATGAGGATGATGTGGAGGGTGAGGATGATGTGGAGGATGAGTGAAAACGAAACCAAAAAATAAAAATGACCAATTGTAAACTTTAAGTTTGGTAAATTTATTCACATGTTAATATGAGTTTCTTCTTGTTTTGTTAATTAAACTGCGTTTTTCCCCACCACGGTTTTCTCTAACAAACAACTTTTTCTGAAGATGACTTCGGAAATTTTTTACACATGAACATTGAAATTTAGTGAAGCTATACAGGAGGTGTTACAGGTTTCATA</canonical>
            <polymorphic>CGGAAACTAAGGAAGCCTGCCTGGATGCTATCAATCGAATGATTTCCTCCAGTATATCTTGTCACACTCTCCAACTCAATATATCGGAAAATAGAAAGAAGAGAGATCCACCTCAAAAGAAAACTAGCACTATGCCGATGCCAAGGGAAATTTTGGATCTGATACTTGCAAGATGGAATGTGTATCATGTAATTCTGAAGATTGTGTATAAAACCCGCCAAGATGTACAGTTGGGAAATTGGACTCGGAAAAATTGGCTCACAAAATTCCGTTTCCATAACCAATATGACACTGTCACCGTGTCGAATCTGAATATCAAAACGCAAAAAGTGGATATCGATTTGTCAGATTCTGCAGAATTGTCAACGCTCATAGCGGGCTCATCATTGCATAGGAAACGTCGAAAGGATAGATATCAAAACTTCCTGACCAATGTTAGAAGGATTTTTCGAACAGACAGAATTTCGATTAAATTCTCTCATTGGAATTACGATATGTTYCAAGCTCCACTTCATATGATCGTCCATCGTCTATTTGAAAACATCTTCAAAACGGACTTCAACAATTTAAATATAGATATTCATCTTTTTCCAAGCGAGAGACGGGAATTCTATTCGCATCTAATCAATAGACTTCCTTCACTCACTACCCACACATTGCGTATTTCACAATGTTACACCAAGATATGATTATTTTCTCACTATCAGAAATGGAGGATGAGGATGATATGGAGGATGAGGATGATGTGGAGGGTGAGGATGATGTGGAGGATGAGTGAAAACGAAACCAAAAAATAAAAATGACCAATTGTAAACTTTAAGTTTGGTAAATTTATTCACATGTTAATATGAGTTTCTTCTTGTTTTGTTAATTAAACTGCGTTTTTCCCCACCACGGTTTTCTCTAACAAACAACTTTTTCTGAAGATGACTTCGGAAATTTTTTACACATGAACATTGAAATTTAGTGAAGCTATACAGGAGGTGTTACAGGTTTCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGATTTTTCGAACAGACAG</pcr_primer_p1>
		<pcr_primer_p2>TCATATCTTGGTGTAACATTGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGGATTTTTCGAACAGACAGAATTTCGATTAAATTCTCTCATTGGAATTACGATATGTTTCAAGCTCCACTTCATATGATCGTCCATCGTCTATTTGAAAACATCTTCAAAACGGACTTCAACAATTTAAATATAGATATTCATCTTTTTCCAAGCGAGAGACGGGAATTCTATTCGCATCTAATCAATAGACTTCCTTCACTCACTACCCACACATTGCGTATTTCACAATGTTACACCAAGATATGA</canonical_amplicon>
		<polymorphic_amplicon>AAGGATTTTTCGAACAGACAGAATTTCGATTAAATTCTCTCATTGGAATTACGATATGTTYCAAGCTCCACTTCATATGATCGTCCATCGTCTATTTGAAAACATCTTCAAAACGGACTTCAACAATTTAAATATAGATATTCATCTTTTTCCAAGCGAGAGACGGGAATTCTATTCGCATCTAATCAATAGACTTCCTTCACTCACTACCCACACATTGCGTATTTCACAATGTTACACCAAGATATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18024</snp_id>
        <super_contig>c010901085.Contig1</super_contig>
        <contig_pos>83891</contig_pos>
        <strand></strand>
        <context>AACGGACTTC[A/C]ACAATTTAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCATATGATCGTCCATCGTCTATTTGAAAACATCTTCAAAACGGACTTC</left_flank>
        <right_flank>ACAATTTAAATATAGATATTCATCTTTTTCCAAGCGAGAGACGGGAATTC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACACTCTCCAACTCAATATATCGGAAAATAGAAAGAAGAGAGATCCACCTCAAAAGAAAACTAGCACTATGCCGATGCCAAGGGAAATTTTGGATCTGATACTTGCAAGATGGAATGTGTATCATGTAATTCTGAAGATTGTGTATAAAACCCGCCAAGATGTACAGTTGGGAAATTGGACTCGGAAAAATTGGCTCACAAAATTCCGTTTCCATAACCAATATGACACTGTCACCGTGTCGAATCTGAATATCAAAACGCAAAAAGTGGATATCGATTTGTCAGATTCTGCAGAATTGTCAACGCTCATAGCGGGCTCATCATTGCATAGGAAACGTCGAAAGGATAGATATCAAAACTTCCTGACCAATGTTAGAAGGATTTTTCGAACAGACAGAATTTCGATTAAATTCTCTCATTGGAATTACGATATGTTTCAAGCTCCACTTCATATGATCGTCCATCGTCTATTTGAAAACATCTTCAAAACGGACTTCAACAATTTAAATATAGATATTCATCTTTTTCCAAGCGAGAGACGGGAATTCTATTCGCATCTAATCAATAGACTTCCTTCACTCACTACCCACACATTGCGTATTTCACAATGTTACACCAAGATATGATTATTTTCTCACTATCAGAAATGGAGGATGAGGATGATATGGAGGATGAGGATGATGTGGAGGGTGAGGATGATGTGGAGGATGAGTGAAAACGAAACCAAAAAATAAAAATGACCAATTGTAAACTTTAAGTTTGGTAAATTTATTCACATGTTAATATGAGTTTCTTCTTGTTTTGTTAATTAAACTGCGTTTTTCCCCACCACGGTTTTCTCTAACAAACAACTTTTTCTGAAGATGACTTCGGAAATTTTTTACACATGAACATTGAAATTTAGTGAAGCTATACAGGAGGTGTTACAGGTTTCATATAAAGAAGGATTTTTACCTAATTTCTTAAATTCAAGTCCTAAACCATACTTTATTTCACTA</canonical>
            <polymorphic>TCACACTCTCCAACTCAATATATCGGAAAATAGAAAGAAGAGAGATCCACCTCAAAAGAAAACTAGCACTATGCCGATGCCAAGGGAAATTTTGGATCTGATACTTGCAAGATGGAATGTGTATCATGTAATTCTGAAGATTGTGTATAAAACCCGCCAAGATGTACAGTTGGGAAATTGGACTCGGAAAAATTGGCTCACAAAATTCCGTTTCCATAACCAATATGACACTGTCACCGTGTCGAATCTGAATATCAAAACGCAAAAAGTGGATATCGATTTGTCAGATTCTGCAGAATTGTCAACGCTCATAGCGGGCTCATCATTGCATAGGAAACGTCGAAAGGATAGATATCAAAACTTCCTGACCAATGTTAGAAGGATTTTTCGAACAGACAGAATTTCGATTAAATTCTCTCATTGGAATTACGATATGTTTCAAGCTCCACTTCATATGATCGTCCATCGTCTATTTGAAAACATCTTCAAAACGGACTTCMACAATTTAAATATAGATATTCATCTTTTTCCAAGCGAGAGACGGGAATTCTATTCGCATCTAATCAATAGACTTCCTTCACTCACTACCCACACATTGCGTATTTCACAATGTTACACCAAGATATGATTATTTTCTCACTATCAGAAATGGAGGATGAGGATGATATGGAGGATGAGGATGATGTGGAGGGTGAGGATGATGTGGAGGATGAGTGAAAACGAAACCAAAAAATAAAAATGACCAATTGTAAACTTTAAGTTTGGTAAATTTATTCACATGTTAATATGAGTTTCTTCTTGTTTTGTTAATTAAACTGCGTTTTTCCCCACCACGGTTTTCTCTAACAAACAACTTTTTCTGAAGATGACTTCGGAAATTTTTTACACATGAACATTGAAATTTAGTGAAGCTATACAGGAGGTGTTACAGGTTTCATATAAAGAAGGATTTTTACCTAATTTCTTAAATTCAAGTCCTAAACCATACTTTATTTCACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGATTTTTCGAACAGACAG</pcr_primer_p1>
		<pcr_primer_p2>TCATATCTTGGTGTAACATTGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGGATTTTTCGAACAGACAGAATTTCGATTAAATTCTCTCATTGGAATTACGATATGTTTCAAGCTCCACTTCATATGATCGTCCATCGTCTATTTGAAAACATCTTCAAAACGGACTTCAACAATTTAAATATAGATATTCATCTTTTTCCAAGCGAGAGACGGGAATTCTATTCGCATCTAATCAATAGACTTCCTTCACTCACTACCCACACATTGCGTATTTCACAATGTTACACCAAGATATGA</canonical_amplicon>
		<polymorphic_amplicon>AAGGATTTTTCGAACAGACAGAATTTCGATTAAATTCTCTCATTGGAATTACGATATGTTTCAAGCTCCACTTCATATGATCGTCCATCGTCTATTTGAAAACATCTTCAAAACGGACTTCMACAATTTAAATATAGATATTCATCTTTTTCCAAGCGAGAGACGGGAATTCTATTCGCATCTAATCAATAGACTTCCTTCACTCACTACCCACACATTGCGTATTTCACAATGTTACACCAAGATATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18025</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>1726</contig_pos>
        <strand>+</strand>
        <context>TATCACCAGG[C/T]TTACTTATAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGG</left_flank>
        <right_flank>TTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGT</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAATCTTAAAACTGTTAAAAAAATAGTAAACAGAGAAATAAAAACAATCAAAAGTGAGCAGGATTTAACCTAGAACAAATTTAGAAGACTTGCTTTATGAACTCACTAGTTGACTTATATCTTTTGCGCTTAAAACAAATGCACTTCTTATGCTATATCAACTAAGACGTGGTTCACCATTTCCAAATTAAAAGTTTGGCACTTTAAAACTTAAGTTAACATCTTTTTTTTTTACTCGTTAAGATATAAAAAGATTAAACGAGAAAAAATATAACTTTGAATAAAAAACACAAAACACTCTATCATGATAGCAAAAATAGACAATCAAACATATTGATCTCCCATTCTTAATTCTAATCCTTGATAAAGCATTATTCTAATTAAATGACCTACCATAATATTAACTGTTAAACGCACAGTCAAGGCCAAAGGACGTGAAAATTCCCTAACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATA</canonical>
            <polymorphic>GTAATCTTAAAACTGTTAAAAAAATAGTAAACAGAGAAATAAAAACAATCAAAAGTGAGCAGGATTTAACCTAGAACAAATTTAGAAGACTTGCTTTATGAACTCACTAGTTGACTTATATCTTTTGCGCTTAAAACAAATGCACTTCTTATGCTATATCAACTAAGACGTGGTTCACCATTTCCAAATTAAAAGTTTGGCACTTTAAAACTTAAGTTAACATCTTTTTTTTTTACTCGTTAAGATATAAAAAGATTAAACGAGAAAAAATATAACTTTGAATAAAAAACACAAAACACTCTATCATGATAGCAAAAATAGACAATCAAACATATTGATCTCCCATTCTTAATTCTAATCCTTGATAAAGCATTATTCTAATTAAATGACCTACCATAATATTAACTGTTAAACGCACAGTCAAGGCCAAAGGACGTGAAAATTCCCTAACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGGYTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 283 83 63 43 29</canonical_bands>
                <polymorphic_bands>782 83 63 43 29</polymorphic_bands>
            </assay>
            <assay>
                <site>ACCWGGT</site>
                <isoschizomers>
                    <enzyme>MabI</enzyme>
                    <enzyme>SexAI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTCCCTAACAATTTCAACT</pcr_primer_p1>
		<pcr_primer_p2>CCCCTTAGTTCTGTAATTTCTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATTCCCTAACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGG</canonical_amplicon>
		<polymorphic_amplicon>AAAATTCCCTAACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGGYTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18026</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>1744</contig_pos>
        <strand>+</strand>
        <context>TATAAACTGA[A/G]AATTTCTCCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCTAAGAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGA</left_flank>
        <right_flank>AATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAATAGTAAACAGAGAAATAAAAACAATCAAAAGTGAGCAGGATTTAACCTAGAACAAATTTAGAAGACTTGCTTTATGAACTCACTAGTTGACTTATATCTTTTGCGCTTAAAACAAATGCACTTCTTATGCTATATCAACTAAGACGTGGTTCACCATTTCCAAATTAAAAGTTTGGCACTTTAAAACTTAAGTTAACATCTTTTTTTTTTACTCGTTAAGATATAAAAAGATTAAACGAGAAAAAATATAACTTTGAATAAAAAACACAAAACACTCTATCATGATAGCAAAAATAGACAATCAAACATATTGATCTCCCATTCTTAATTCTAATCCTTGATAAAGCATTATTCTAATTAAATGACCTACCATAATATTAACTGTTAAACGCACAGTCAAGGCCAAAGGACGTGAAAATTCCCTAACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACAC</canonical>
            <polymorphic>AAAAAATAGTAAACAGAGAAATAAAAACAATCAAAAGTGAGCAGGATTTAACCTAGAACAAATTTAGAAGACTTGCTTTATGAACTCACTAGTTGACTTATATCTTTTGCGCTTAAAACAAATGCACTTCTTATGCTATATCAACTAAGACGTGGTTCACCATTTCCAAATTAAAAGTTTGGCACTTTAAAACTTAAGTTAACATCTTTTTTTTTTACTCGTTAAGATATAAAAAGATTAAACGAGAAAAAATATAACTTTGAATAAAAAACACAAAACACTCTATCATGATAGCAAAAATAGACAATCAAACATATTGATCTCCCATTCTTAATTCTAATCCTTGATAAAGCATTATTCTAATTAAATGACCTACCATAATATTAACTGTTAAACGCACAGTCAAGGCCAAAGGACGTGAAAATTCCCTAACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGARAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>362 287 147 78 66 60</canonical_bands>
                <polymorphic_bands>362 287 147 144 60</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTCCCTAACAATTTCAACT</pcr_primer_p1>
		<pcr_primer_p2>CCCCTTAGTTCTGTAATTTCTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATTCCCTAACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGG</canonical_amplicon>
		<polymorphic_amplicon>AAAATTCCCTAACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGARAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18027</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>1816</contig_pos>
        <strand>+</strand>
        <context>AAGTAAATTC[A/G]ACTATTCCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTC</left_flank>
        <right_flank>ACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCTTTATGAACTCACTAGTTGACTTATATCTTTTGCGCTTAAAACAAATGCACTTCTTATGCTATATCAACTAAGACGTGGTTCACCATTTCCAAATTAAAAGTTTGGCACTTTAAAACTTAAGTTAACATCTTTTTTTTTTACTCGTTAAGATATAAAAAGATTAAACGAGAAAAAATATAACTTTGAATAAAAAACACAAAACACTCTATCATGATAGCAAAAATAGACAATCAAACATATTGATCTCCCATTCTTAATTCTAATCCTTGATAAAGCATTATTCTAATTAAATGACCTACCATAATATTAACTGTTAAACGCACAGTCAAGGCCAAAGGACGTGAAAATTCCCTAACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTAT</canonical>
            <polymorphic>TTGCTTTATGAACTCACTAGTTGACTTATATCTTTTGCGCTTAAAACAAATGCACTTCTTATGCTATATCAACTAAGACGTGGTTCACCATTTCCAAATTAAAAGTTTGGCACTTTAAAACTTAAGTTAACATCTTTTTTTTTTACTCGTTAAGATATAAAAAGATTAAACGAGAAAAAATATAACTTTGAATAAAAAACACAAAACACTCTATCATGATAGCAAAAATAGACAATCAAACATATTGATCTCCCATTCTTAATTCTAATCCTTGATAAAGCATTATTCTAATTAAATGACCTACCATAATATTAACTGTTAAACGCACAGTCAAGGCCAAAGGACGTGAAAATTCCCTAACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCRACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTCCCTAACAATTTCAACT</pcr_primer_p1>
		<pcr_primer_p2>CCCCTTAGTTCTGTAATTTCTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATTCCCTAACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGG</canonical_amplicon>
		<polymorphic_amplicon>AAAATTCCCTAACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCRACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18028</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>1924</contig_pos>
        <strand>+</strand>
        <context>GTAAAGTATT[C/T]CTATATCTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATT</left_flank>
        <right_flank>CTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCACTTTAAAACTTAAGTTAACATCTTTTTTTTTTACTCGTTAAGATATAAAAAGATTAAACGAGAAAAAATATAACTTTGAATAAAAAACACAAAACACTCTATCATGATAGCAAAAATAGACAATCAAACATATTGATCTCCCATTCTTAATTCTAATCCTTGATAAAGCATTATTCTAATTAAATGACCTACCATAATATTAACTGTTAAACGCACAGTCAAGGCCAAAGGACGTGAAAATTCCCTAACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAAT</canonical>
            <polymorphic>GGCACTTTAAAACTTAAGTTAACATCTTTTTTTTTTACTCGTTAAGATATAAAAAGATTAAACGAGAAAAAATATAACTTTGAATAAAAAACACAAAACACTCTATCATGATAGCAAAAATAGACAATCAAACATATTGATCTCCCATTCTTAATTCTAATCCTTGATAAAGCATTATTCTAATTAAATGACCTACCATAATATTAACTGTTAAACGCACAGTCAAGGCCAAAGGACGTGAAAATTCCCTAACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTYCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCAAAACAACACGTTAATAAAA</pcr_primer_p1>
		<pcr_primer_p2>TCGTTATCGTTATGATCTGATG</pcr_primer_p2>
		<pcr_amplicon_size>299</pcr_amplicon_size>
		<canonical_amplicon>ACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGA</canonical_amplicon>
		<polymorphic_amplicon>ACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTYCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18038</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>2174</contig_pos>
        <strand>+</strand>
        <context>TACGGATAAA[A/G]ATTAAAATAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAA</left_flank>
        <right_flank>ATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAA</canonical>
            <polymorphic>AACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAARATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>132 129 105 86 84 78 78 67 66 61 52 21 18 14 6 3</canonical_bands>
                <polymorphic_bands>162 132 129 105 86 78 67 66 61 52 21 18 14 6 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTAAAAACACCTACAAGACTGTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTAGTGTTCTGTCATCAGCTA</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>ATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAARATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18039</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>2200</contig_pos>
        <strand></strand>
        <context>ATAGAAAAAG[A/C]TGCTAAAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAG</left_flank>
        <right_flank>TGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAA</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCG</canonical>
            <polymorphic>GAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGMTGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATCATCAGATCATAACGATAAC</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTGATTTTTCTGAAGGT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>TCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>TCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGMTGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18040</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>2219</contig_pos>
        <strand></strand>
        <context>TAGAAAAACT[G/A]AAAAAYATAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACT</left_flank>
        <right_flank>AAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTC</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAGGTTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAAC</canonical>
            <polymorphic>ACCAGGTTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTRAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATCATCAGATCATAACGATAAC</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTGATTTTTCTGAAGGT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>TCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>TCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTRAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18041</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>2225</contig_pos>
        <strand></strand>
        <context>AACTRAAAAA[T/C]ATAGCTGATG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAA</left_flank>
        <right_flank>ATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAA</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGA</canonical>
            <polymorphic>TTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAAYATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATCATCAGATCATAACGATAAC</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTGATTTTTCTGAAGGT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>TCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>TCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAAYATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18042</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>2303</contig_pos>
        <strand>+</strand>
        <context>CAACACTGGC[A/G]AAYTCAACAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGC</left_flank>
        <right_flank>AACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGT</canonical>
            <polymorphic>AAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCRAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATCATCAGATCATAACGATAAC</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTGATTTTTCTGAAGGT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>TCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>TCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCRAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18043</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>2306</contig_pos>
        <strand>+</strand>
        <context>CACTGGCRAA[C/T]TCAACATTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAA</left_flank>
        <right_flank>TCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAAC</canonical>
            <polymorphic>AGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAAYTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATCATCAGATCATAACGATAAC</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTGATTTTTCTGAAGGT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>TCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>TCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAAYTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18051</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>2510</contig_pos>
        <strand>+</strand>
        <context>AAGAAATACT[C/T]TGTCTTCTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACT</left_flank>
        <right_flank>TGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGAC</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAACTATAATTAGAACTAGAATAATCAAGAGTAAAATATCTTTAGATTTACAATCTAACGTTTTTAAATTAAACTAAACTCTTAAATTAAGAGGTATACCTTTTGA</canonical>
            <polymorphic>TAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTYTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAACTATAATTAGAACTAGAATAATCAAGAGTAAAATATCTTTAGATTTACAATCTAACGTTTTTAAATTAAACTAAACTCTTAAATTAAGAGGTATACCTTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGGTGCACGATTTAAC</pcr_primer_p1>
		<pcr_primer_p2>AATTGGTTTTTCTGTTTATACCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTYTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18053</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>2558</contig_pos>
        <strand>+</strand>
        <context>TAGATTTACT[A/G]ACAATACCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACT</left_flank>
        <right_flank>ACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAG</right_flank>
        <qual_score>146</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAACTATAATTAGAACTAGAATAATCAAGAGTAAAATATCTTTAGATTTACAATCTAACGTTTTTAAATTAAACTAAACTCTTAAATTAAGAGGTATACCTTTTGATTAACAGTCAACAATTCTTTAATTAAACTAACTCTTAAAAACTACGAG</canonical>
            <polymorphic>AATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTRACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAACTATAATTAGAACTAGAATAATCAAGAGTAAAATATCTTTAGATTTACAATCTAACGTTTTTAAATTAAACTAAACTCTTAAATTAAGAGGTATACCTTTTGATTAACAGTCAACAATTCTTTAATTAAACTAACTCTTAAAAACTACGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGGTGCACGATTTAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAGTATTCAGTTTTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>281</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTRACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18054</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>2575</contig_pos>
        <strand>+</strand>
        <context>CCTCTAACCA[A/G]GGTGGTATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCA</left_flank>
        <right_flank>GGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAACTATAATTAGAACTAGAATAATCAAGAGTAAAATATCTTTAGATTTACAATCTAACGTTTTTAAATTAAACTAAACTCTTAAATTAAGAGGTATACCTTTTGATTAACAGTCAACAATTCTTTAATTAAACTAACTCTTAAAAACTACGAGTTACCTCAAAACATGTT</canonical>
            <polymorphic>TAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCARGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAACTATAATTAGAACTAGAATAATCAAGAGTAAAATATCTTTAGATTTACAATCTAACGTTTTTAAATTAAACTAAACTCTTAAATTAAGAGGTATACCTTTTGATTAACAGTCAACAATTCTTTAATTAAACTAACTCTTAAAAACTACGAGTTACCTCAAAACATGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTTCTAGCACGAATAGCAC</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGGAGCAGATAACACCTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCARGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18057</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>2699</contig_pos>
        <strand>+</strand>
        <context>AGGAAATACC[C/T]GGTACCARCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACC</left_flank>
        <right_flank>GGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAACTATAATTAGAACTAGAATAATCAAGAGTAAAATATCTTTAGATTTACAATCTAACGTTTTTAAATTAAACTAAACTCTTAAATTAAGAGGTATACCTTTTGATTAACAGTCAACAATTCTTTAATTAAACTAACTCTTAAAAACTACGAGTTACCTCAAAACATGTTTTCAAAACATATTTATATATAGTTTTATTACTAGATTCAGGTTCCCCTAAATCTACTTTACTACAACTTACTCCCCTTTGGGCAATTGATGGATGATTTGTACCACCTCTAAGTAATCTTCAAA</canonical>
            <polymorphic>ATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCYGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAACTATAATTAGAACTAGAATAATCAAGAGTAAAATATCTTTAGATTTACAATCTAACGTTTTTAAATTAAACTAAACTCTTAAATTAAGAGGTATACCTTTTGATTAACAGTCAACAATTCTTTAATTAAACTAACTCTTAAAAACTACGAGTTACCTCAAAACATGTTTTCAAAACATATTTATATATAGTTTTATTACTAGATTCAGGTTCCCCTAAATCTACTTTACTACAACTTACTCCCCTTTGGGCAATTGATGGATGATTTGTACCACCTCTAAGTAATCTTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACCAATTAAACAAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>GTAGGAGTCAAAATCGTCTAGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTAC</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCYGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18058</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>2707</contig_pos>
        <strand>+</strand>
        <context>CCYGGTACCA[A/G]CARAAAAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCA</left_flank>
        <right_flank>CAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTA</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAACTATAATTAGAACTAGAATAATCAAGAGTAAAATATCTTTAGATTTACAATCTAACGTTTTTAAATTAAACTAAACTCTTAAATTAAGAGGTATACCTTTTGATTAACAGTCAACAATTCTTTAATTAAACTAACTCTTAAAAACTACGAGTTACCTCAAAACATGTTTTCAAAACATATTTATATATAGTTTTATTACTAGATTCAGGTTCCCCTAAATCTACTTTACTACAACTTACTCCCCTTTGGGCAATTGATGGATGATTTGTACCACCTCTAAGTAATCTTCAAAAACACATA</canonical>
            <polymorphic>ATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCARCAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAACTATAATTAGAACTAGAATAATCAAGAGTAAAATATCTTTAGATTTACAATCTAACGTTTTTAAATTAAACTAAACTCTTAAATTAAGAGGTATACCTTTTGATTAACAGTCAACAATTCTTTAATTAAACTAACTCTTAAAAACTACGAGTTACCTCAAAACATGTTTTCAAAACATATTTATATATAGTTTTATTACTAGATTCAGGTTCCCCTAAATCTACTTTACTACAACTTACTCCCCTTTGGGCAATTGATGGATGATTTGTACCACCTCTAAGTAATCTTCAAAAACACATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACCAATTAAACAAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>GTAGGAGTCAAAATCGTCTAGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTAC</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCARCAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18059</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>2710</contig_pos>
        <strand>+</strand>
        <context>GGTACCARCA[A/G]AAAAGAAACC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACA</left_flank>
        <right_flank>AAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAA</right_flank>
        <qual_score>151</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAACTATAATTAGAACTAGAATAATCAAGAGTAAAATATCTTTAGATTTACAATCTAACGTTTTTAAATTAAACTAAACTCTTAAATTAAGAGGTATACCTTTTGATTAACAGTCAACAATTCTTTAATTAAACTAACTCTTAAAAACTACGAGTTACCTCAAAACATGTTTTCAAAACATATTTATATATAGTTTTATTACTAGATTCAGGTTCCCCTAAATCTACTTTACTACAACTTACTCCCCTTTGGGCAATTGATGGATGATTTGTACCACCTCTAAGTAATCTTCAAAAACACATAAAA</canonical>
            <polymorphic>GAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACARAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAACTATAATTAGAACTAGAATAATCAAGAGTAAAATATCTTTAGATTTACAATCTAACGTTTTTAAATTAAACTAAACTCTTAAATTAAGAGGTATACCTTTTGATTAACAGTCAACAATTCTTTAATTAAACTAACTCTTAAAAACTACGAGTTACCTCAAAACATGTTTTCAAAACATATTTATATATAGTTTTATTACTAGATTCAGGTTCCCCTAAATCTACTTTACTACAACTTACTCCCCTTTGGGCAATTGATGGATGATTTGTACCACCTCTAAGTAATCTTCAAAAACACATAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACCAATTAAACAAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>GTAGGAGTCAAAATCGTCTAGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTAC</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACARAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18063</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>2771</contig_pos>
        <strand>+</strand>
        <context>GTTTTACACC[A/G]TCCAACAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACC</left_flank>
        <right_flank>TCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAACTATAATTAGAACTAGAATAATCAAGAGTAAAATATCTTTAGATTTACAATCTAACGTTTTTAAATTAAACTAAACTCTTAAATTAAGAGGTATACCTTTTGATTAACAGTCAACAATTCTTTAATTAAACTAACTCTTAAAAACTACGAGTTACCTCAAAACATGTTTTCAAAACATATTTATATATAGTTTTATTACTAGATTCAGGTTCCCCTAAATCTACTTTACTACAACTTACTCCCCTTTGGGCAATTGATGGATGATTTGTACCACCTCTAAGTAATCTTCAAAAACACATAAAAAGTTTTTTACTGTCTTTTACAATTTCATTTAAACAACTACATTTAAAATCCAGGTTATAGA</canonical>
            <polymorphic>TTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCRTCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAACTATAATTAGAACTAGAATAATCAAGAGTAAAATATCTTTAGATTTACAATCTAACGTTTTTAAATTAAACTAAACTCTTAAATTAAGAGGTATACCTTTTGATTAACAGTCAACAATTCTTTAATTAAACTAACTCTTAAAAACTACGAGTTACCTCAAAACATGTTTTCAAAACATATTTATATATAGTTTTATTACTAGATTCAGGTTCCCCTAAATCTACTTTACTACAACTTACTCCCCTTTGGGCAATTGATGGATGATTTGTACCACCTCTAAGTAATCTTCAAAAACACATAAAAAGTTTTTTACTGTCTTTTACAATTTCATTTAAACAACTACATTTAAAATCCAGGTTATAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACCAATTAAACAAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>GTAGGAGTCAAAATCGTCTAGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTAC</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCRTCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18064</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>3409</contig_pos>
        <strand>+</strand>
        <context>TTAATGAGGG[C/T]TCTCAATTAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAAAATAAACGATCATACACGAGCCAAAAAATTAAGTAGTTAATGAGGG</left_flank>
        <right_flank>TCTCAATTACTACTCAGCCTCCAAAGATAGTTTAGAATGTCTGCCAATAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAATTAGAACTAGAATAATCAAGAGTAAAATATCTTTAGATTTACAATCTAACGTTTTTAAATTAAACTAAACTCTTAAATTAAGAGGTATACCTTTTGATTAACAGTCAACAATTCTTTAATTAAACTAACTCTTAAAAACTACGAGTTACCTCAAAACATGTTTTCAAAACATATTTATATATAGTTTTATTACTAGATTCAGGTTCCCCTAAATCTACTTTACTACAACTTACTCCCCTTTGGGCAATTGATGGATGATTTGTACCACCTCTAAGTAATCTTCAAAAACACATAAAAAGTTTTTTACTGTCTTTTACAATTTCATTTAAACAACTACATTTAAAATCCAGGTTATAGAACATTGTAGGCCAAATGTTTCTTAAAATATAGACCGGGTATATATCTATTTTAATAAATTAAAAATTTTTTATTATAATCCTTAAGAATAAAATAAACGATCATACACGAGCCAAAAAATTAAGTAGTTAATGAGGGCTCTCAATTACTACTCAGCCTCCAAAGATAGTTTAGAATGTCTGCCAATATCTTTTCAGTTTAAATACAACTTTACTCCTGCTCTTTTAATTTTTGTCTAACCAGGTACTAATCTGCTTCGTTCAACAAATTTTAAAATTATGAAAAATAACCAATATAGATCCAAATTCTACCGTGAACCTAAAAGAAACTTATAAAATTTCATAATTAACATCAATTAAAGTACAAGCTTTAACAAGTCTAGCCGATTATTCTGGAACAAGTATTTTACAAGCGATTAATTGCCGAGGTAAATTTTTATTGCCTACTCCGTAAATCAAATTTAGATAATACCATTTTAAATCATCTTAAACCATGATCAAATTTTAATTCCCTAAAAGAAAACTTTATAAGATAAAAAACCATTTCTGCGAAAAAGAAACATACTTTTTATACTATTATCTCTACAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGT</canonical>
            <polymorphic>ATAATTAGAACTAGAATAATCAAGAGTAAAATATCTTTAGATTTACAATCTAACGTTTTTAAATTAAACTAAACTCTTAAATTAAGAGGTATACCTTTTGATTAACAGTCAACAATTCTTTAATTAAACTAACTCTTAAAAACTACGAGTTACCTCAAAACATGTTTTCAAAACATATTTATATATAGTTTTATTACTAGATTCAGGTTCCCCTAAATCTACTTTACTACAACTTACTCCCCTTTGGGCAATTGATGGATGATTTGTACCACCTCTAAGTAATCTTCAAAAACACATAAAAAGTTTTTTACTGTCTTTTACAATTTCATTTAAACAACTACATTTAAAATCCAGGTTATAGAACATTGTAGGCCAAATGTTTCTTAAAATATAGACCGGGTATATATCTATTTTAATAAATTAAAAATTTTTTATTATAATCCTTAAGAATAAAATAAACGATCATACACGAGCCAAAAAATTAAGTAGTTAATGAGGGYTCTCAATTACTACTCAGCCTCCAAAGATAGTTTAGAATGTCTGCCAATATCTTTTCAGTTTAAATACAACTTTACTCCTGCTCTTTTAATTTTTGTCTAACCAGGTACTAATCTGCTTCGTTCAACAAATTTTAAAATTATGAAAAATAACCAATATAGATCCAAATTCTACCGTGAACCTAAAAGAAACTTATAAAATTTCATAATTAACATCAATTAAAGTACAAGCTTTAACAAGTCTAGCCGATTATTCTGGAACAAGTATTTTACAAGCGATTAATTGCCGAGGTAAATTTTTATTGCCTACTCCGTAAATCAAATTTAGATAATACCATTTTAAATCATCTTAAACCATGATCAAATTTTAATTCCCTAAAAGAAAACTTTATAAGATAAAAAACCATTTCTGCGAAAAAGAAACATACTTTTTATACTATTATCTCTACAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>372 257 211 101 26 18 15</canonical_bands>
                <polymorphic_bands>372 257 211 101 44 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGGCCAAATGTTTCTTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GCAGATTAGTACCTGGTTAGACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTAGGCCAAATGTTTCTTAAAATATAGACCGGGTATATATCTATTTTAATAAATTAAAAATTTTTTATTATAATCCTTAAGAATAAAATAAACGATCATACACGAGCCAAAAAATTAAGTAGTTAATGAGGGCTCTCAATTACTACTCAGCCTCCAAAGATAGTTTAGAATGTCTGCCAATATCTTTTCAGTTTAAATACAACTTTACTCCTGCTCTTTTAATTTTTGTCTAACCAGGTACTAATCTGC</canonical_amplicon>
		<polymorphic_amplicon>GTAGGCCAAATGTTTCTTAAAATATAGACCGGGTATATATCTATTTTAATAAATTAAAAATTTTTTATTATAATCCTTAAGAATAAAATAAACGATCATACACGAGCCAAAAAATTAAGTAGTTAATGAGGGYTCTCAATTACTACTCAGCCTCCAAAGATAGTTTAGAATGTCTGCCAATATCTTTTCAGTTTAAATACAACTTTACTCCTGCTCTTTTAATTTTTGTCTAACCAGGTACTAATCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18106</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>3273</contig_pos>
        <strand>+</strand>
        <context>GRTTATARAA[C/T]ATTGTAGGCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTTTACAATTTCATTTAAACAACTACATTTAAAATCCAGGTTATAGAA</left_flank>
        <right_flank>ATTGTAGGCCAAATGTTTCTTAAAATATAGACCGGGTATATATCTATTTT</right_flank>
        <qual_score>152</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAACTATAATTAGAACTAGAATAATCAAGAGTAAAATATCTTTAGATTTACAATCTAACGTTTTTAAATTAAACTAAACTCTTAAATTAAGAGGTATACCTTTTGATTAACAGTCAACAATTCTTTAATTAAACTAACTCTTAAAAACTACGAGTTACCTCAAAACATGTTTTCAAAACATATTTATATATAGTTTTATTACTAGATTCAGGTTCCCCTAAATCTACTTTACTACAACTTACTCCCCTTTGGGCAATTGATGGATGATTTGTACCACCTCTAAGTAATCTTCAAAAACACATAAAAAGTTTTTTACTGTCTTTTACAATTTCATTTAAACAACTACATTTAAAATCCAGGTTATAGAACATTGTAGGCCAAATGTTTCTTAAAATATAGACCGGGTATATATCTATTTTAATAAATTAAAAATTTTTTATTATAATCCTTAAGAATAAAATAAACGATCATACACGAGCCAAAAAATTAAGTAGTTAATGAGGGCTCTCAATTACTACTCAGCCTCCAAAGATAGTTTAGAATGTCTGCCAATATCTTTTCAGTTTAAATACAACTTTACTCCTGCTCTTTTAATTTTTGTCTAACCAGGTACTAATCTGCTTCGTTCAACAAATTTTAAAATTATGAAAAATAACCAATATAGATCCAAATTCTACCGTGAACCTAAAAGAAACTTATAAAATTTCATAATTAACATCAATTAAAGTACAAGCTTTAACAAGTCTAGCCGATTATTCTGGAACAAGTATTTTACAAGCGATTAATTGCCGAGGTAAATTTTTATTGCCTACTCCGTAAATCAAATTTAGATAATACCATTTTAAATCATCTTAAACCATGATCAAATT</canonical>
            <polymorphic>CAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAACTATAATTAGAACTAGAATAATCAAGAGTAAAATATCTTTAGATTTACAATCTAACGTTTTTAAATTAAACTAAACTCTTAAATTAAGAGGTATACCTTTTGATTAACAGTCAACAATTCTTTAATTAAACTAACTCTTAAAAACTACGAGTTACCTCAAAACATGTTTTCAAAACATATTTATATATAGTTTTATTACTAGATTCAGGTTCCCCTAAATCTACTTTACTACAACTTACTCCCCTTTGGGCAATTGATGGATGATTTGTACCACCTCTAAGTAATCTTCAAAAACACATAAAAAGTTTTTTACTGTCTTTTACAATTTCATTTAAACAACTACATTTAAAATCCAGGTTATAGAAYATTGTAGGCCAAATGTTTCTTAAAATATAGACCGGGTATATATCTATTTTAATAAATTAAAAATTTTTTATTATAATCCTTAAGAATAAAATAAACGATCATACACGAGCCAAAAAATTAAGTAGTTAATGAGGGCTCTCAATTACTACTCAGCCTCCAAAGATAGTTTAGAATGTCTGCCAATATCTTTTCAGTTTAAATACAACTTTACTCCTGCTCTTTTAATTTTTGTCTAACCAGGTACTAATCTGCTTCGTTCAACAAATTTTAAAATTATGAAAAATAACCAATATAGATCCAAATTCTACCGTGAACCTAAAAGAAACTTATAAAATTTCATAATTAACATCAATTAAAGTACAAGCTTTAACAAGTCTAGCCGATTATTCTGGAACAAGTATTTTACAAGCGATTAATTGCCGAGGTAAATTTTTATTGCCTACTCCGTAAATCAAATTTAGATAATACCATTTTAAATCATCTTAAACCATGATCAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACTACAACTTACTCCCCTTTG</pcr_primer_p1>
		<pcr_primer_p2>TCGTGTATGATCGTTTATTTTATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTACTACAACTTACTCCCCTTTGGGCAATTGATGGATGATTTGTACCACCTCTAAGTAATCTTCAAAAACACATAAAAAGTTTTTTACTGTCTTTTACAATTTCATTTAAACAACTACATTTAAAATCCAGGTTATAGAACATTGTAGGCCAAATGTTTCTTAAAATATAGACCGGGTATATATCTATTTTAATAAATTAAAAATTTTTTATTATAATCCTTAAGAATAAAATAAACGATCATACACGA</canonical_amplicon>
		<polymorphic_amplicon>TTACTACAACTTACTCCCCTTTGGGCAATTGATGGATGATTTGTACCACCTCTAAGTAATCTTCAAAAACACATAAAAAGTTTTTTACTGTCTTTTACAATTTCATTTAAACAACTACATTTAAAATCCAGGTTATAGAAYATTGTAGGCCAAATGTTTCTTAAAATATAGACCGGGTATATATCTATTTTAATAAATTAAAAATTTTTTATTATAATCCTTAAGAATAAAATAAACGATCATACACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18107</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>3270</contig_pos>
        <strand>+</strand>
        <context>CCAGRTTATA[A/G]AAYATTGTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGTCTTTTACAATTTCATTTAAACAACTACATTTAAAATCCAGGTTATA</left_flank>
        <right_flank>AACATTGTAGGCCAAATGTTTCTTAAAATATAGACCGGGTATATATCTAT</right_flank>
        <qual_score>150</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAACTATAATTAGAACTAGAATAATCAAGAGTAAAATATCTTTAGATTTACAATCTAACGTTTTTAAATTAAACTAAACTCTTAAATTAAGAGGTATACCTTTTGATTAACAGTCAACAATTCTTTAATTAAACTAACTCTTAAAAACTACGAGTTACCTCAAAACATGTTTTCAAAACATATTTATATATAGTTTTATTACTAGATTCAGGTTCCCCTAAATCTACTTTACTACAACTTACTCCCCTTTGGGCAATTGATGGATGATTTGTACCACCTCTAAGTAATCTTCAAAAACACATAAAAAGTTTTTTACTGTCTTTTACAATTTCATTTAAACAACTACATTTAAAATCCAGGTTATAGAACATTGTAGGCCAAATGTTTCTTAAAATATAGACCGGGTATATATCTATTTTAATAAATTAAAAATTTTTTATTATAATCCTTAAGAATAAAATAAACGATCATACACGAGCCAAAAAATTAAGTAGTTAATGAGGGCTCTCAATTACTACTCAGCCTCCAAAGATAGTTTAGAATGTCTGCCAATATCTTTTCAGTTTAAATACAACTTTACTCCTGCTCTTTTAATTTTTGTCTAACCAGGTACTAATCTGCTTCGTTCAACAAATTTTAAAATTATGAAAAATAACCAATATAGATCCAAATTCTACCGTGAACCTAAAAGAAACTTATAAAATTTCATAATTAACATCAATTAAAGTACAAGCTTTAACAAGTCTAGCCGATTATTCTGGAACAAGTATTTTACAAGCGATTAATTGCCGAGGTAAATTTTTATTGCCTACTCCGTAAATCAAATTTAGATAATACCATTTTAAATCATCTTAAACCATGATCAA</canonical>
            <polymorphic>ATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAACTATAATTAGAACTAGAATAATCAAGAGTAAAATATCTTTAGATTTACAATCTAACGTTTTTAAATTAAACTAAACTCTTAAATTAAGAGGTATACCTTTTGATTAACAGTCAACAATTCTTTAATTAAACTAACTCTTAAAAACTACGAGTTACCTCAAAACATGTTTTCAAAACATATTTATATATAGTTTTATTACTAGATTCAGGTTCCCCTAAATCTACTTTACTACAACTTACTCCCCTTTGGGCAATTGATGGATGATTTGTACCACCTCTAAGTAATCTTCAAAAACACATAAAAAGTTTTTTACTGTCTTTTACAATTTCATTTAAACAACTACATTTAAAATCCAGGTTATARAACATTGTAGGCCAAATGTTTCTTAAAATATAGACCGGGTATATATCTATTTTAATAAATTAAAAATTTTTTATTATAATCCTTAAGAATAAAATAAACGATCATACACGAGCCAAAAAATTAAGTAGTTAATGAGGGCTCTCAATTACTACTCAGCCTCCAAAGATAGTTTAGAATGTCTGCCAATATCTTTTCAGTTTAAATACAACTTTACTCCTGCTCTTTTAATTTTTGTCTAACCAGGTACTAATCTGCTTCGTTCAACAAATTTTAAAATTATGAAAAATAACCAATATAGATCCAAATTCTACCGTGAACCTAAAAGAAACTTATAAAATTTCATAATTAACATCAATTAAAGTACAAGCTTTAACAAGTCTAGCCGATTATTCTGGAACAAGTATTTTACAAGCGATTAATTGCCGAGGTAAATTTTTATTGCCTACTCCGTAAATCAAATTTAGATAATACCATTTTAAATCATCTTAAACCATGATCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACTACAACTTACTCCCCTTTG</pcr_primer_p1>
		<pcr_primer_p2>TCGTGTATGATCGTTTATTTTATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTACTACAACTTACTCCCCTTTGGGCAATTGATGGATGATTTGTACCACCTCTAAGTAATCTTCAAAAACACATAAAAAGTTTTTTACTGTCTTTTACAATTTCATTTAAACAACTACATTTAAAATCCAGGTTATAGAACATTGTAGGCCAAATGTTTCTTAAAATATAGACCGGGTATATATCTATTTTAATAAATTAAAAATTTTTTATTATAATCCTTAAGAATAAAATAAACGATCATACACGA</canonical_amplicon>
		<polymorphic_amplicon>TTACTACAACTTACTCCCCTTTGGGCAATTGATGGATGATTTGTACCACCTCTAAGTAATCTTCAAAAACACATAAAAAGTTTTTTACTGTCTTTTACAATTTCATTTAAACAACTACATTTAAAATCCAGGTTATARAACATTGTAGGCCAAATGTTTCTTAAAATATAGACCGGGTATATATCTATTTTAATAAATTAAAAATTTTTTATTATAATCCTTAAGAATAAAATAAACGATCATACACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18108</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>3264</contig_pos>
        <strand>+</strand>
        <context>TAAAATCCAG[A/G]TTATARAAYA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTACTGTCTTTTACAATTTCATTTAAACAACTACATTTAAAATCCAG</left_flank>
        <right_flank>TTATAGAACATTGTAGGCCAAATGTTTCTTAAAATATAGACCGGGTATAT</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAACTATAATTAGAACTAGAATAATCAAGAGTAAAATATCTTTAGATTTACAATCTAACGTTTTTAAATTAAACTAAACTCTTAAATTAAGAGGTATACCTTTTGATTAACAGTCAACAATTCTTTAATTAAACTAACTCTTAAAAACTACGAGTTACCTCAAAACATGTTTTCAAAACATATTTATATATAGTTTTATTACTAGATTCAGGTTCCCCTAAATCTACTTTACTACAACTTACTCCCCTTTGGGCAATTGATGGATGATTTGTACCACCTCTAAGTAATCTTCAAAAACACATAAAAAGTTTTTTACTGTCTTTTACAATTTCATTTAAACAACTACATTTAAAATCCAGGTTATAGAACATTGTAGGCCAAATGTTTCTTAAAATATAGACCGGGTATATATCTATTTTAATAAATTAAAAATTTTTTATTATAATCCTTAAGAATAAAATAAACGATCATACACGAGCCAAAAAATTAAGTAGTTAATGAGGGCTCTCAATTACTACTCAGCCTCCAAAGATAGTTTAGAATGTCTGCCAATATCTTTTCAGTTTAAATACAACTTTACTCCTGCTCTTTTAATTTTTGTCTAACCAGGTACTAATCTGCTTCGTTCAACAAATTTTAAAATTATGAAAAATAACCAATATAGATCCAAATTCTACCGTGAACCTAAAAGAAACTTATAAAATTTCATAATTAACATCAATTAAAGTACAAGCTTTAACAAGTCTAGCCGATTATTCTGGAACAAGTATTTTACAAGCGATTAATTGCCGAGGTAAATTTTTATTGCCTACTCCGTAAATCAAATTTAGATAATACCATTTTAAATCATCTTAAACCAT</canonical>
            <polymorphic>TACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAACTATAATTAGAACTAGAATAATCAAGAGTAAAATATCTTTAGATTTACAATCTAACGTTTTTAAATTAAACTAAACTCTTAAATTAAGAGGTATACCTTTTGATTAACAGTCAACAATTCTTTAATTAAACTAACTCTTAAAAACTACGAGTTACCTCAAAACATGTTTTCAAAACATATTTATATATAGTTTTATTACTAGATTCAGGTTCCCCTAAATCTACTTTACTACAACTTACTCCCCTTTGGGCAATTGATGGATGATTTGTACCACCTCTAAGTAATCTTCAAAAACACATAAAAAGTTTTTTACTGTCTTTTACAATTTCATTTAAACAACTACATTTAAAATCCAGRTTATAGAACATTGTAGGCCAAATGTTTCTTAAAATATAGACCGGGTATATATCTATTTTAATAAATTAAAAATTTTTTATTATAATCCTTAAGAATAAAATAAACGATCATACACGAGCCAAAAAATTAAGTAGTTAATGAGGGCTCTCAATTACTACTCAGCCTCCAAAGATAGTTTAGAATGTCTGCCAATATCTTTTCAGTTTAAATACAACTTTACTCCTGCTCTTTTAATTTTTGTCTAACCAGGTACTAATCTGCTTCGTTCAACAAATTTTAAAATTATGAAAAATAACCAATATAGATCCAAATTCTACCGTGAACCTAAAAGAAACTTATAAAATTTCATAATTAACATCAATTAAAGTACAAGCTTTAACAAGTCTAGCCGATTATTCTGGAACAAGTATTTTACAAGCGATTAATTGCCGAGGTAAATTTTTATTGCCTACTCCGTAAATCAAATTTAGATAATACCATTTTAAATCATCTTAAACCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>497 253 205 45</canonical_bands>
                <polymorphic_bands>542 253 205</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>497 253 250</canonical_bands>
                <polymorphic_bands>747 253</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACTACAACTTACTCCCCTTTG</pcr_primer_p1>
		<pcr_primer_p2>TCGTGTATGATCGTTTATTTTATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTACTACAACTTACTCCCCTTTGGGCAATTGATGGATGATTTGTACCACCTCTAAGTAATCTTCAAAAACACATAAAAAGTTTTTTACTGTCTTTTACAATTTCATTTAAACAACTACATTTAAAATCCAGGTTATAGAACATTGTAGGCCAAATGTTTCTTAAAATATAGACCGGGTATATATCTATTTTAATAAATTAAAAATTTTTTATTATAATCCTTAAGAATAAAATAAACGATCATACACGA</canonical_amplicon>
		<polymorphic_amplicon>TTACTACAACTTACTCCCCTTTGGGCAATTGATGGATGATTTGTACCACCTCTAAGTAATCTTCAAAAACACATAAAAAGTTTTTTACTGTCTTTTACAATTTCATTTAAACAACTACATTTAAAATCCAGRTTATAGAACATTGTAGGCCAAATGTTTCTTAAAATATAGACCGGGTATATATCTATTTTAATAAATTAAAAATTTTTTATTATAATCCTTAAGAATAAAATAAACGATCATACACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18154</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>3960</contig_pos>
        <strand>+</strand>
        <context>CCACTATAAC[A/G]ACTATACCTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAAC</left_flank>
        <right_flank>ACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAA</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCAGTTTAAATACAACTTTACTCCTGCTCTTTTAATTTTTGTCTAACCAGGTACTAATCTGCTTCGTTCAACAAATTTTAAAATTATGAAAAATAACCAATATAGATCCAAATTCTACCGTGAACCTAAAAGAAACTTATAAAATTTCATAATTAACATCAATTAAAGTACAAGCTTTAACAAGTCTAGCCGATTATTCTGGAACAAGTATTTTACAAGCGATTAATTGCCGAGGTAAATTTTTATTGCCTACTCCGTAAATCAAATTTAGATAATACCATTTTAAATCATCTTAAACCATGATCAAATTTTAATTCCCTAAAAGAAAACTTTATAAGATAAAAAACCATTTCTGCGAAAAAGAAACATACTTTTTATACTATTATCTCTACAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAA</canonical>
            <polymorphic>TTTTCAGTTTAAATACAACTTTACTCCTGCTCTTTTAATTTTTGTCTAACCAGGTACTAATCTGCTTCGTTCAACAAATTTTAAAATTATGAAAAATAACCAATATAGATCCAAATTCTACCGTGAACCTAAAAGAAACTTATAAAATTTCATAATTAACATCAATTAAAGTACAAGCTTTAACAAGTCTAGCCGATTATTCTGGAACAAGTATTTTACAAGCGATTAATTGCCGAGGTAAATTTTTATTGCCTACTCCGTAAATCAAATTTAGATAATACCATTTTAAATCATCTTAAACCATGATCAAATTTTAATTCCCTAAAAGAAAACTTTATAAGATAAAAAACCATTTCTGCGAAAAAGAAACATACTTTTTATACTATTATCTCTACAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACRACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAAATAGATTTTTGATTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>TTAAGTGACAGCGTTTAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAA</canonical_amplicon>
		<polymorphic_amplicon>CAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACRACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18155</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>3560</contig_pos>
        <strand>+</strand>
        <context>TGAAAAATAW[C/T]CAATATAGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAGGTACTAATCTGCTTCGTTCAACAAATTTTAAAATTATGAAAAATAA</left_flank>
        <right_flank>CAATATAGATCCAAATTCTACCGTGAACCTAAAAGAAACTTATAAAATTT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTCAAAACATGTTTTCAAAACATATTTATATATAGTTTTATTACTAGATTCAGGTTCCCCTAAATCTACTTTACTACAACTTACTCCCCTTTGGGCAATTGATGGATGATTTGTACCACCTCTAAGTAATCTTCAAAAACACATAAAAAGTTTTTTACTGTCTTTTACAATTTCATTTAAACAACTACATTTAAAATCCAGGTTATAGAACATTGTAGGCCAAATGTTTCTTAAAATATAGACCGGGTATATATCTATTTTAATAAATTAAAAATTTTTTATTATAATCCTTAAGAATAAAATAAACGATCATACACGAGCCAAAAAATTAAGTAGTTAATGAGGGCTCTCAATTACTACTCAGCCTCCAAAGATAGTTTAGAATGTCTGCCAATATCTTTTCAGTTTAAATACAACTTTACTCCTGCTCTTTTAATTTTTGTCTAACCAGGTACTAATCTGCTTCGTTCAACAAATTTTAAAATTATGAAAAATAACCAATATAGATCCAAATTCTACCGTGAACCTAAAAGAAACTTATAAAATTTCATAATTAACATCAATTAAAGTACAAGCTTTAACAAGTCTAGCCGATTATTCTGGAACAAGTATTTTACAAGCGATTAATTGCCGAGGTAAATTTTTATTGCCTACTCCGTAAATCAAATTTAGATAATACCATTTTAAATCATCTTAAACCATGATCAAATTTTAATTCCCTAAAAGAAAACTTTATAAGATAAAAAACCATTTCTGCGAAAAAGAAACATACTTTTTATACTATTATCTCTACAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTA</canonical>
            <polymorphic>ACCTCAAAACATGTTTTCAAAACATATTTATATATAGTTTTATTACTAGATTCAGGTTCCCCTAAATCTACTTTACTACAACTTACTCCCCTTTGGGCAATTGATGGATGATTTGTACCACCTCTAAGTAATCTTCAAAAACACATAAAAAGTTTTTTACTGTCTTTTACAATTTCATTTAAACAACTACATTTAAAATCCAGGTTATAGAACATTGTAGGCCAAATGTTTCTTAAAATATAGACCGGGTATATATCTATTTTAATAAATTAAAAATTTTTTATTATAATCCTTAAGAATAAAATAAACGATCATACACGAGCCAAAAAATTAAGTAGTTAATGAGGGCTCTCAATTACTACTCAGCCTCCAAAGATAGTTTAGAATGTCTGCCAATATCTTTTCAGTTTAAATACAACTTTACTCCTGCTCTTTTAATTTTTGTCTAACCAGGTACTAATCTGCTTCGTTCAACAAATTTTAAAATTATGAAAAATAAYCAATATAGATCCAAATTCTACCGTGAACCTAAAAGAAACTTATAAAATTTCATAATTAACATCAATTAAAGTACAAGCTTTAACAAGTCTAGCCGATTATTCTGGAACAAGTATTTTACAAGCGATTAATTGCCGAGGTAAATTTTTATTGCCTACTCCGTAAATCAAATTTAGATAATACCATTTTAAATCATCTTAAACCATGATCAAATTTTAATTCCCTAAAAGAAAACTTTATAAGATAAAAAACCATTTCTGCGAAAAAGAAACATACTTTTTATACTATTATCTCTACAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTACTACTCAGCCTCCAAAGAT</pcr_primer_p1>
		<pcr_primer_p2>CAGAATAATCGGCTAGACTTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTACTACTCAGCCTCCAAAGATAGTTTAGAATGTCTGCCAATATCTTTTCAGTTTAAATACAACTTTACTCCTGCTCTTTTAATTTTTGTCTAACCAGGTACTAATCTGCTTCGTTCAACAAATTTTAAAATTATGAAAAATAACCAATATAGATCCAAATTCTACCGTGAACCTAAAAGAAACTTATAAAATTTCATAATTAACATCAATTAAAGTACAAGCTTTAACAAGTCTAGCCGATTATTCTG</canonical_amplicon>
		<polymorphic_amplicon>ATTACTACTCAGCCTCCAAAGATAGTTTAGAATGTCTGCCAATATCTTTTCAGTTTAAATACAACTTTACTCCTGCTCTTTTAATTTTTGTCTAACCAGGTACTAATCTGCTTCGTTCAACAAATTTTAAAATTATGAAAAATAAYCAATATAGATCCAAATTCTACCGTGAACCTAAAAGAAACTTATAAAATTTCATAATTAACATCAATTAAAGTACAAGCTTTAACAAGTCTAGCCGATTATTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18156</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>4035</contig_pos>
        <strand>+</strand>
        <context>GYAAATAAGA[A/G]AATTTTAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGA</left_flank>
        <right_flank>AATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTTAAAATTATGAAAAATAACCAATATAGATCCAAATTCTACCGTGAACCTAAAAGAAACTTATAAAATTTCATAATTAACATCAATTAAAGTACAAGCTTTAACAAGTCTAGCCGATTATTCTGGAACAAGTATTTTACAAGCGATTAATTGCCGAGGTAAATTTTTATTGCCTACTCCGTAAATCAAATTTAGATAATACCATTTTAAATCATCTTAAACCATGATCAAATTTTAATTCCCTAAAAGAAAACTTTATAAGATAAAAAACCATTTCTGCGAAAAAGAAACATACTTTTTATACTATTATCTCTACAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTA</canonical>
            <polymorphic>AAATTTTAAAATTATGAAAAATAACCAATATAGATCCAAATTCTACCGTGAACCTAAAAGAAACTTATAAAATTTCATAATTAACATCAATTAAAGTACAAGCTTTAACAAGTCTAGCCGATTATTCTGGAACAAGTATTTTACAAGCGATTAATTGCCGAGGTAAATTTTTATTGCCTACTCCGTAAATCAAATTTAGATAATACCATTTTAAATCATCTTAAACCATGATCAAATTTTAATTCCCTAAAAGAAAACTTTATAAGATAAAAAACCATTTCTGCGAAAAAGAAACATACTTTTTATACTATTATCTCTACAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGARAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>208 167 136 108 95 64 42 37 35 32 27 27 21 1</canonical_bands>
                <polymorphic_bands>208 167 136 108 95 91 42 37 35 32 27 21 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAAATAGATTTTTGATTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>TTAAGTGACAGCGTTTAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAA</canonical_amplicon>
		<polymorphic_amplicon>CAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGARAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18171</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>4002</contig_pos>
        <strand>+</strand>
        <context>AACACataaa[A/G]taaaaaaata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAA</left_flank>
        <right_flank>TAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCTAACCAGGTACTAATCTGCTTCGTTCAACAAATTTTAAAATTATGAAAAATAACCAATATAGATCCAAATTCTACCGTGAACCTAAAAGAAACTTATAAAATTTCATAATTAACATCAATTAAAGTACAAGCTTTAACAAGTCTAGCCGATTATTCTGGAACAAGTATTTTACAAGCGATTAATTGCCGAGGTAAATTTTTATTGCCTACTCCGTAAATCAAATTTAGATAATACCATTTTAAATCATCTTAAACCATGATCAAATTTTAATTCCCTAAAAGAAAACTTTATAAGATAAAAAACCATTTCTGCGAAAAAGAAACATACTTTTTATACTATTATCTCTACAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAAT</canonical>
            <polymorphic>TGTCTAACCAGGTACTAATCTGCTTCGTTCAACAAATTTTAAAATTATGAAAAATAACCAATATAGATCCAAATTCTACCGTGAACCTAAAAGAAACTTATAAAATTTCATAATTAACATCAATTAAAGTACAAGCTTTAACAAGTCTAGCCGATTATTCTGGAACAAGTATTTTACAAGCGATTAATTGCCGAGGTAAATTTTTATTGCCTACTCCGTAAATCAAATTTAGATAATACCATTTTAAATCATCTTAAACCATGATCAAATTTTAATTCCCTAAAAGAAAACTTTATAAGATAAAAAACCATTTCTGCGAAAAAGAAACATACTTTTTATACTATTATCTCTACAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAARTAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAAATAGATTTTTGATTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>TTAAGTGACAGCGTTTAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAA</canonical_amplicon>
		<polymorphic_amplicon>CAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAARTAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18175</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>4523</contig_pos>
        <strand>+</strand>
        <context>TAGGATCRAT[A/G]TRTATATAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGAT</left_flank>
        <right_flank>TTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATATAA</canonical>
            <polymorphic>AGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATRTTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAACAAATAAAATAAGAAAACCAG</pcr_primer_p1>
		<pcr_primer_p2>TTACAACTCTATTTGGGTGTACG</pcr_primer_p2>
		<pcr_amplicon_size>833</pcr_amplicon_size>
		<canonical_amplicon>CAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTAC</canonical_amplicon>
		<polymorphic_amplicon>CAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATRTTTATATAACTAATAATACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18176</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>4520</contig_pos>
        <strand>+</strand>
        <context>TYATAGGATC[A/G]ATRTRTATAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATC</left_flank>
        <right_flank>ATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATA</canonical>
            <polymorphic>CTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCRATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAACAAATAAAATAAGAAAACCAG</pcr_primer_p1>
		<pcr_primer_p2>TTACAACTCTATTTGGGTGTACG</pcr_primer_p2>
		<pcr_amplicon_size>833</pcr_amplicon_size>
		<canonical_amplicon>CAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATAC</canonical_amplicon>
		<polymorphic_amplicon>CAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCRATATTTATATAACTAATAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18177</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>4511</contig_pos>
        <strand></strand>
        <context>ATCTCCTCTT[C/T]ATAGGATCRA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTT</left_flank>
        <right_flank>ATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAAC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAA</canonical>
            <polymorphic>ATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTYATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAACAAATAAAATAAGAAAACCAG</pcr_primer_p1>
		<pcr_primer_p2>TTACAACTCTATTTGGGTGTACG</pcr_primer_p2>
		<pcr_amplicon_size>833</pcr_amplicon_size>
		<canonical_amplicon>CAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAAC</canonical_amplicon>
		<polymorphic_amplicon>CAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTYATAGGATCGATATTTATATAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18178</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>4443</contig_pos>
        <strand>+</strand>
        <context>AGAAAACCAG[A/G]TGTGTATTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAG</left_flank>
        <right_flank>TGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTT</canonical>
            <polymorphic>TATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGRTGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAACGAAAATTCCTCTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTACAACTCTATTTGGGTGTACG</pcr_primer_p2>
		<pcr_amplicon_size>859</pcr_amplicon_size>
		<canonical_amplicon>ATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAAT</canonical_amplicon>
		<polymorphic_amplicon>ATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGRTGTGTATTCTTATAGAAATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18179</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>4337</contig_pos>
        <strand>+</strand>
        <context>ACAAAAACAA[A/T]GATATATAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAA</left_flank>
        <right_flank>GATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATACTATTATCTCTACAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAA</canonical>
            <polymorphic>TTATACTATTATCTCTACAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAAWGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACGTAAAGCACCTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGGAATTTTCGTTATTTTAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTC</canonical_amplicon>
		<polymorphic_amplicon>TTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAAWGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18180</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>4322</contig_pos>
        <strand>+</strand>
        <context>TAATTCTAAT[A/T]AATAACAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAAT</left_flank>
        <right_flank>AATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAA</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGAAACATACTTTTTATACTATTATCTCTACAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATC</canonical>
            <polymorphic>AAAGAAACATACTTTTTATACTATTATCTCTACAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATWAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 463 38</canonical_bands>
                <polymorphic_bands>537 463</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>213 145 131 90 72 67 57 57 38 34 18 18 14 14 14 12 6</canonical_bands>
                <polymorphic_bands>213 145 131 95 90 72 67 57 34 18 18 14 14 14 12 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>129 111 97 84 64 64 63 54 42 39 37 36 35 31 27 23 21 17 12 8 6</canonical_bands>
                <polymorphic_bands>129 111 97 84 64 64 63 54 48 39 37 36 35 31 27 23 21 17 12 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACGTAAAGCACCTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGGAATTTTCGTTATTTTAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTC</canonical_amplicon>
		<polymorphic_amplicon>TTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATWAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18181</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>4273</contig_pos>
        <strand>+</strand>
        <context>CTTAARCCYA[A/G]ATAARTAGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCA</left_flank>
        <right_flank>ATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTA</right_flank>
        <qual_score>145</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAATTCCCTAAAAGAAAACTTTATAAGATAAAAAACCATTTCTGCGAAAAAGAAACATACTTTTTATACTATTATCTCTACAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATAT</canonical>
            <polymorphic>TTAATTCCCTAAAAGAAAACTTTATAAGATAAAAAACCATTTCTGCGAAAAAGAAACATACTTTTTATACTATTATCTCTACAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCARATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACGTAAAGCACCTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGGAATTTTCGTTATTTTAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTC</canonical_amplicon>
		<polymorphic_amplicon>TTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCARATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18182</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>4271</contig_pos>
        <strand>+</strand>
        <context>CACTTAARCC[C/T]ARATAARTAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCC</left_flank>
        <right_flank>AGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAAT</right_flank>
        <qual_score>145</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTAATTCCCTAAAAGAAAACTTTATAAGATAAAAAACCATTTCTGCGAAAAAGAAACATACTTTTTATACTATTATCTCTACAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTAT</canonical>
            <polymorphic>TTTTAATTCCCTAAAAGAAAACTTTATAAGATAAAAAACCATTTCTGCGAAAAAGAAACATACTTTTTATACTATTATCTCTACAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCYAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACGTAAAGCACCTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGGAATTTTCGTTATTTTAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTC</canonical_amplicon>
		<polymorphic_amplicon>TTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCYAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18183</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>4268</contig_pos>
        <strand>+</strand>
        <context>aaCCACTTAA[A/G]CCYARATAAR</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAA</left_flank>
        <right_flank>CCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCT</right_flank>
        <qual_score>145</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTTAATTCCCTAAAAGAAAACTTTATAAGATAAAAAACCATTTCTGCGAAAAAGAAACATACTTTTTATACTATTATCTCTACAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTG</canonical>
            <polymorphic>AAATTTTAATTCCCTAAAAGAAAACTTTATAAGATAAAAAACCATTTCTGCGAAAAAGAAACATACTTTTTATACTATTATCTCTACAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAARCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTTAAG</site>
                <isoschizomers>
                    <enzyme>AflII</enzyme>
                    <enzyme>BfrI</enzyme>
                    <enzyme>BspTI</enzyme>
                    <enzyme>Bst98I</enzyme>
                    <enzyme>MspCI</enzyme>
                    <enzyme>Vha464I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>416 286 214 84</canonical_bands>
                <polymorphic_bands>416 370 214</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACGTAAAGCACCTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGGAATTTTCGTTATTTTAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTC</canonical_amplicon>
		<polymorphic_amplicon>TTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAARCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18245</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>4026</contig_pos>
        <strand></strand>
        <context>tytCCCTTAG[C/T]AAATAAGARA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAG</left_flank>
        <right_flank>AAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGAT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTTCAACAAATTTTAAAATTATGAAAAATAACCAATATAGATCCAAATTCTACCGTGAACCTAAAAGAAACTTATAAAATTTCATAATTAACATCAATTAAAGTACAAGCTTTAACAAGTCTAGCCGATTATTCTGGAACAAGTATTTTACAAGCGATTAATTGCCGAGGTAAATTTTTATTGCCTACTCCGTAAATCAAATTTAGATAATACCATTTTAAATCATCTTAAACCATGATCAAATTTTAATTCCCTAAAAGAAAACTTTATAAGATAAAAAACCATTTCTGCGAAAAAGAAACATACTTTTTATACTATTATCTCTACAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTT</canonical>
            <polymorphic>TCGTTCAACAAATTTTAAAATTATGAAAAATAACCAATATAGATCCAAATTCTACCGTGAACCTAAAAGAAACTTATAAAATTTCATAATTAACATCAATTAAAGTACAAGCTTTAACAAGTCTAGCCGATTATTCTGGAACAAGTATTTTACAAGCGATTAATTGCCGAGGTAAATTTTTATTGCCTACTCCGTAAATCAAATTTAGATAATACCATTTTAAATCATCTTAAACCATGATCAAATTTTAATTCCCTAAAAGAAAACTTTATAAGATAAAAAACCATTTCTGCGAAAAAGAAACATACTTTTTATACTATTATCTCTACAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGYAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAAATAGATTTTTGATTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>TTAAGTGACAGCGTTTAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAA</canonical_amplicon>
		<polymorphic_amplicon>CAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGYAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18247</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>4017</contig_pos>
        <strand></strand>
        <context>aaaatattat[T/C]tCCCTTAGYA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTAT</left_flank>
        <right_flank>TCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTC</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATCTGCTTCGTTCAACAAATTTTAAAATTATGAAAAATAACCAATATAGATCCAAATTCTACCGTGAACCTAAAAGAAACTTATAAAATTTCATAATTAACATCAATTAAAGTACAAGCTTTAACAAGTCTAGCCGATTATTCTGGAACAAGTATTTTACAAGCGATTAATTGCCGAGGTAAATTTTTATTGCCTACTCCGTAAATCAAATTTAGATAATACCATTTTAAATCATCTTAAACCATGATCAAATTTTAATTCCCTAAAAGAAAACTTTATAAGATAAAAAACCATTTCTGCGAAAAAGAAACATACTTTTTATACTATTATCTCTACAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGA</canonical>
            <polymorphic>TAATCTGCTTCGTTCAACAAATTTTAAAATTATGAAAAATAACCAATATAGATCCAAATTCTACCGTGAACCTAAAAGAAACTTATAAAATTTCATAATTAACATCAATTAAAGTACAAGCTTTAACAAGTCTAGCCGATTATTCTGGAACAAGTATTTTACAAGCGATTAATTGCCGAGGTAAATTTTTATTGCCTACTCCGTAAATCAAATTTAGATAATACCATTTTAAATCATCTTAAACCATGATCAAATTTTAATTCCCTAAAAGAAAACTTTATAAGATAAAAAACCATTTCTGCGAAAAAGAAACATACTTTTTATACTATTATCTCTACAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATYTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAAATAGATTTTTGATTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>TTAAGTGACAGCGTTTAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAA</canonical_amplicon>
		<polymorphic_amplicon>CAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATYTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18268</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>4594</contig_pos>
        <strand>+</strand>
        <context>TTTTAAACCC[C/T]ATCATTGTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCC</left_flank>
        <right_flank>ATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAA</canonical>
            <polymorphic>CTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCYATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAACAAATAAAATAAGAAAACCAG</pcr_primer_p1>
		<pcr_primer_p2>TTACAACTCTATTTGGGTGTACG</pcr_primer_p2>
		<pcr_amplicon_size>833</pcr_amplicon_size>
		<canonical_amplicon>CAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCT</canonical_amplicon>
		<polymorphic_amplicon>CAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCYATCATTGTAAGTGATACATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18270</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>4568</contig_pos>
        <strand>+</strand>
        <context>AAACAAAAAA[A/T]AACTTAATTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAA</left_flank>
        <right_flank>AACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTA</canonical>
            <polymorphic>AAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAAWAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAACAAATAAAATAAGAAAACCAG</pcr_primer_p1>
		<pcr_primer_p2>TTACAACTCTATTTGGGTGTACG</pcr_primer_p2>
		<pcr_amplicon_size>833</pcr_amplicon_size>
		<canonical_amplicon>CAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAA</canonical_amplicon>
		<polymorphic_amplicon>CAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAAWAACTTAATTATAGAATTTTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18281</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>51493</contig_pos>
        <strand>+</strand>
        <context>CACTGTAAAT[A/G]TCACTCTTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTTCTTCAGTGCCGTTTCCCTATCCATACCAACTTCTACACTGTAAAT</left_flank>
        <right_flank>TCACTCTTATCAATGCCGACAAATCCATACAGCCTCCAATTATCTTAAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCCTTCTACCCACCCTGGAGTGTCTGCGTCTCTTTAAAGGCGCATATCTCAAGAACTAGTCAACTTATCGAAAATTTATAAACTACAAAAATGTGTAAAATTTTATGTTCAATATTCTTGTAATTTAAAACTTCATTATATCTTCTCTGGTTTTTGAGATATGCGCTTTCAAAGAAACACAACGTCTTTTCCAGCCTAACCACCTACAACCAATTGGAACTTGAAATGGAGATTTTTAATTTCCAATCGAATGGAATCGATGTGAAATATGAAATTTCTTACGGTTTGCGACAAGGGATAGATATTAATTATTCTGGATTATGGATGACTAGAAGCTATCCAATCTGGCCGGATTATCAAGCTAAGGAATATGGGATCTTGAATCATCAGAATGATCCAATCACCTTATCTATGATGGTGAGCCTAATTCTCCAAAAAAATCAATAATTATTTCTTCAGTGCCGTTTCCCTATCCATACCAACTTCTACACTGTAAATGTCACTCTTATCAATGCCGACAAATCCATACAGCCTCCAATTATCTTAAATTCCACTTTGGACATTTTTGTGAAATCTGTTTCCGCATTTTCTGGAATCAAAATCGAAGGAGGCGGTCCTTATTCCATACAGTATGAGTTATGGGATCCATTGGCAACTACTGTTGGATATGAGACAAGTACAAAGGCTGGCGGGAGTTTGAATTTTTGGATGGGCCTGGTTTTGGCGGGGATTTTGAATTTATTGTGAATAAAGGTTTTTATGTCTTAAAATTTCCAATAATTCTGTAAAGTTTTCATAGTTCTAGCTTCCATTTAAAGCGAGTTATGCGCCTTTAAAAGTTTGGAAGGGAGACGCAGAGAAACGAGAGTGCTCTAGCGTCTCTGCGTCTATCAATGCGTTTAAAGACGCATAACTTTGCTTGAAGTTGTTCAATTTTAATGATTTTTAGCTAGATTCGTAGGAAACTTAAGGACTACAGGATAATATAAAATTCAAAAA</canonical>
            <polymorphic>TGCCTTCTACCCACCCTGGAGTGTCTGCGTCTCTTTAAAGGCGCATATCTCAAGAACTAGTCAACTTATCGAAAATTTATAAACTACAAAAATGTGTAAAATTTTATGTTCAATATTCTTGTAATTTAAAACTTCATTATATCTTCTCTGGTTTTTGAGATATGCGCTTTCAAAGAAACACAACGTCTTTTCCAGCCTAACCACCTACAACCAATTGGAACTTGAAATGGAGATTTTTAATTTCCAATCGAATGGAATCGATGTGAAATATGAAATTTCTTACGGTTTGCGACAAGGGATAGATATTAATTATTCTGGATTATGGATGACTAGAAGCTATCCAATCTGGCCGGATTATCAAGCTAAGGAATATGGGATCTTGAATCATCAGAATGATCCAATCACCTTATCTATGATGGTGAGCCTAATTCTCCAAAAAAATCAATAATTATTTCTTCAGTGCCGTTTCCCTATCCATACCAACTTCTACACTGTAAATRTCACTCTTATCAATGCCGACAAATCCATACAGCCTCCAATTATCTTAAATTCCACTTTGGACATTTTTGTGAAATCTGTTTCCGCATTTTCTGGAATCAAAATCGAAGGAGGCGGTCCTTATTCCATACAGTATGAGTTATGGGATCCATTGGCAACTACTGTTGGATATGAGACAAGTACAAAGGCTGGCGGGAGTTTGAATTTTTGGATGGGCCTGGTTTTGGCGGGGATTTTGAATTTATTGTGAATAAAGGTTTTTATGTCTTAAAATTTCCAATAATTCTGTAAAGTTTTCATAGTTCTAGCTTCCATTTAAAGCGAGTTATGCGCCTTTAAAAGTTTGGAAGGGAGACGCAGAGAAACGAGAGTGCTCTAGCGTCTCTGCGTCTATCAATGCGTTTAAAGACGCATAACTTTGCTTGAAGTTGTTCAATTTTAATGATTTTTAGCTAGATTCGTAGGAAACTTAAGGACTACAGGATAATATAAAATTCAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGGATTATGGATGACTAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TGTCCAAAGTGGAATTTAAGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTGGATTATGGATGACTAGAAGCTATCCAATCTGGCCGGATTATCAAGCTAAGGAATATGGGATCTTGAATCATCAGAATGATCCAATCACCTTATCTATGATGGTGAGCCTAATTCTCCAAAAAAATCAATAATTATTTCTTCAGTGCCGTTTCCCTATCCATACCAACTTCTACACTGTAAATGTCACTCTTATCAATGCCGACAAATCCATACAGCCTCCAATTATCTTAAATTCCACTTTGGACA</canonical_amplicon>
		<polymorphic_amplicon>TCTGGATTATGGATGACTAGAAGCTATCCAATCTGGCCGGATTATCAAGCTAAGGAATATGGGATCTTGAATCATCAGAATGATCCAATCACCTTATCTATGATGGTGAGCCTAATTCTCCAAAAAAATCAATAATTATTTCTTCAGTGCCGTTTCCCTATCCATACCAACTTCTACACTGTAAATRTCACTCTTATCAATGCCGACAAATCCATACAGCCTCCAATTATCTTAAATTCCACTTTGGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18309</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>53774</contig_pos>
        <strand>+</strand>
        <context>ACTTTATTTT[A/T]AACCTATTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TACAGTAATCCCCGTAAAGATTGAGGAACTTGTGCGAAAAACTTTATTTT</left_flank>
        <right_flank>AACCTATTTGTCTGAGGTTCTCGAGAATCGCTTTTTTTTCCAATTTTAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATTTTTTTTTGAGTGATTTTCTCTTTTCAGTAAAAAATTAAATTAAATGTCTTGAAATACAAATTTTCTCTATCAAATTAGCACAAAAACCATCTTTCTAGACCTATTCGAGAGCGAGTTACAGCCATTTTTGCATATAAGAGAGGCGCAGAGAAACGAGAGCGCTCTCGTTTCTCTGCGTCTCTTTCGAACTTTTAAAGGCGCATAACTCGCTTCAAATGGAAGCTAAAACTATGAAAACTTTACAGGATTATTGGAAATCTTACGGGCTTCTGGATGATACTCAATGCTTTTTAAAAATTTAAAAAAAAATTAAAAAATTGCTAAAAATCGAAAAAAAAATTTTTTTTTTGAATTTTATATTATCTTGTAGCCCTTAAGTTTCCTACGAATGTAGCTAAAAATCAATTCAAAAGGACAATTTTGAACAAATTCGTTTTTCAAATCTACAGTAATCCCCGTAAAGATTGAGGAACTTGTGCGAAAAACTTTATTTTAAACCTATTTGTCTGAGGTTCTCGAGAATCGCTTTTTTTTCCAATTTTAAACCAGTTTTTGACTCTTAACCTATATTTCTCTTTTAATTGAATTCAATTTTCGCTATTTAAGGGTGTCCAAAAGATGAAACTCGAAAATAATGTCTCCTACGAGTCGGATGGAAAAACCTATCGTCTCTATGACGTCACCGCAGAGGACCCAATTCAAGTGAGAGTCAGAAACCATTATTACACTCAACACCAGAATCAAACTGTCCAGTTTGTGGAGGAAATGGTAATTTTTGAAGTTATAGAAAGTTTCAAAAACAATTTATTTTTGGAATTTTCTTATTTTTACCTGGAATCTTACCCCCCCCCCCCCCCCCCCCATCTATTTAAGCTCTATTATCTCGGCTCCAATCAGAGATATCAAAAATTTGTCAACTAATAAAAGATTGGTGATAATATGTGTAATATTTTATCAGTTAACACTTTTTTGATATCTCCTACAGTAACCAAGAT</canonical>
            <polymorphic>CTATTTTTTTTTGAGTGATTTTCTCTTTTCAGTAAAAAATTAAATTAAATGTCTTGAAATACAAATTTTCTCTATCAAATTAGCACAAAAACCATCTTTCTAGACCTATTCGAGAGCGAGTTACAGCCATTTTTGCATATAAGAGAGGCGCAGAGAAACGAGAGCGCTCTCGTTTCTCTGCGTCTCTTTCGAACTTTTAAAGGCGCATAACTCGCTTCAAATGGAAGCTAAAACTATGAAAACTTTACAGGATTATTGGAAATCTTACGGGCTTCTGGATGATACTCAATGCTTTTTAAAAATTTAAAAAAAAATTAAAAAATTGCTAAAAATCGAAAAAAAAATTTTTTTTTTGAATTTTATATTATCTTGTAGCCCTTAAGTTTCCTACGAATGTAGCTAAAAATCAATTCAAAAGGACAATTTTGAACAAATTCGTTTTTCAAATCTACAGTAATCCCCGTAAAGATTGAGGAACTTGTGCGAAAAACTTTATTTTWAACCTATTTGTCTGAGGTTCTCGAGAATCGCTTTTTTTTCCAATTTTAAACCAGTTTTTGACTCTTAACCTATATTTCTCTTTTAATTGAATTCAATTTTCGCTATTTAAGGGTGTCCAAAAGATGAAACTCGAAAATAATGTCTCCTACGAGTCGGATGGAAAAACCTATCGTCTCTATGACGTCACCGCAGAGGACCCAATTCAAGTGAGAGTCAGAAACCATTATTACACTCAACACCAGAATCAAACTGTCCAGTTTGTGGAGGAAATGGTAATTTTTGAAGTTATAGAAAGTTTCAAAAACAATTTATTTTTGGAATTTTCTTATTTTTACCTGGAATCTTACCCCCCCCCCCCCCCCCCCCATCTATTTAAGCTCTATTATCTCGGCTCCAATCAGAGATATCAAAAATTTGTCAACTAATAAAAGATTGGTGATAATATGTGTAATATTTTATCAGTTAACACTTTTTTGATATCTCCTACAGTAACCAAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>453 198 194 99 48 8</canonical_bands>
                <polymorphic_bands>453 242 198 99 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>267 152 119 99 90 64 48 40 36 24 19 18 11 8 5</canonical_bands>
                <polymorphic_bands>267 167 152 99 90 64 40 36 24 19 18 11 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGTTTTTCAAATCTACAGTAATC</pcr_primer_p1>
		<pcr_primer_p2>ACGTCATAGAGACGATAGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCGTTTTTCAAATCTACAGTAATCCCCGTAAAGATTGAGGAACTTGTGCGAAAAACTTTATTTTAAACCTATTTGTCTGAGGTTCTCGAGAATCGCTTTTTTTTCCAATTTTAAACCAGTTTTTGACTCTTAACCTATATTTCTCTTTTAATTGAATTCAATTTTCGCTATTTAAGGGTGTCCAAAAGATGAAACTCGAAAATAATGTCTCCTACGAGTCGGATGGAAAAACCTATCGTCTCTATGACGT</canonical_amplicon>
		<polymorphic_amplicon>TCGTTTTTCAAATCTACAGTAATCCCCGTAAAGATTGAGGAACTTGTGCGAAAAACTTTATTTTWAACCTATTTGTCTGAGGTTCTCGAGAATCGCTTTTTTTTCCAATTTTAAACCAGTTTTTGACTCTTAACCTATATTTCTCTTTTAATTGAATTCAATTTTCGCTATTTAAGGGTGTCCAAAAGATGAAACTCGAAAATAATGTCTCCTACGAGTCGGATGGAAAAACCTATCGTCTCTATGACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18310</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>56673</contig_pos>
        <strand>+</strand>
        <context>GTCTGGAAGG[A/G]TATTCTGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAATCAACCCTCAATTAACTACCTACCGTACTGTCCACAGTCTGGAAGG</left_flank>
        <right_flank>TATTCTGAATGCGTGATTGGTCGAATTCACGCCCGTAACGATCCACACAC</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACGCAGACAGTTAGAGCCACCTAGACTTTAAGCTGCCAAAGCTCAGCGCCTAGTAAGGCCAGAAACGTTGTTTTTCCTGCGAAAAACTTGGAATTTTAATATTAAAAATATGAATAATTAAATTTCCTATATTTTGTACTAAAAAAACACTTTTCTAGCTATACTAGGAGCCAAGATATGTCTATTTGAAGCTCAGGCAGCTAGAGACGCAGACAGCTAGATACTCTAACTCTCTGCGTCTCTATCTATCTAGATATAGATTTTTCTAAAAAGTTGTCAACTACAAAAATAAAGTGCTAGATTAGTTTTATAATTGCTAAAATTTTCAGAACAATCTAATAAGTACAAAGTGCTTATCCAGACACACAAAAATTGAAAATTTTCAAAATTTTCAAAAAAAAACTTTTTTTGAAAACTGTTTTAATTTGTTATAAATAGGAATCCTTTATAATCAACCCTCAATTAACTACCTACCGTACTGTCCACAGTCTGGAAGGGTATTCTGAATGCGTGATTGGTCGAATTCACGCCCGTAACGATCCACACACCAGCAGTGTCCGTCGTGGCATTGCTCAGGTTTGTAGAAGCCTTCGAGATCGCAACGTGGCAAGAATACTCCTGTAATTAGGGGGTTAATTAGGCAATGTGTAATTGATCGTTAATTAGAAACTATGTAAAATTTTATAAGCTTCCAAATTTAGAAACAAACGTGAATCTAGCTTGAAAACTAAAAAAGTTATGATGTGATTTTCCCAGCAACATGTTTTTGCCTCTGAACTAGAAAAAACGTACATTTTGAGCCTAATTATCTCGGTTCCTGTGAGAGATATCAAATTTTTGTCAACTGATAAATTGTTTATCATAATATCACCAACATGTTATTAGTTGACCATTTTTTGATATCAGTTACAGTAACCGAGATATATAAGCTCAAAGTTAGCTAGTAGCGTTTTTACGGTAATTTTCATAGCCATCAATTTTTAAAGTTGTTCTTCCAA</canonical>
            <polymorphic>AGACGCAGACAGTTAGAGCCACCTAGACTTTAAGCTGCCAAAGCTCAGCGCCTAGTAAGGCCAGAAACGTTGTTTTTCCTGCGAAAAACTTGGAATTTTAATATTAAAAATATGAATAATTAAATTTCCTATATTTTGTACTAAAAAAACACTTTTCTAGCTATACTAGGAGCCAAGATATGTCTATTTGAAGCTCAGGCAGCTAGAGACGCAGACAGCTAGATACTCTAACTCTCTGCGTCTCTATCTATCTAGATATAGATTTTTCTAAAAAGTTGTCAACTACAAAAATAAAGTGCTAGATTAGTTTTATAATTGCTAAAATTTTCAGAACAATCTAATAAGTACAAAGTGCTTATCCAGACACACAAAAATTGAAAATTTTCAAAATTTTCAAAAAAAAACTTTTTTTGAAAACTGTTTTAATTTGTTATAAATAGGAATCCTTTATAATCAACCCTCAATTAACTACCTACCGTACTGTCCACAGTCTGGAAGGRTATTCTGAATGCGTGATTGGTCGAATTCACGCCCGTAACGATCCACACACCAGCAGTGTCCGTCGTGGCATTGCTCAGGTTTGTAGAAGCCTTCGAGATCGCAACGTGGCAAGAATACTCCTGTAATTAGGGGGTTAATTAGGCAATGTGTAATTGATCGTTAATTAGAAACTATGTAAAATTTTATAAGCTTCCAAATTTAGAAACAAACGTGAATCTAGCTTGAAAACTAAAAAAGTTATGATGTGATTTTCCCAGCAACATGTTTTTGCCTCTGAACTAGAAAAAACGTACATTTTGAGCCTAATTATCTCGGTTCCTGTGAGAGATATCAAATTTTTGTCAACTGATAAATTGTTTATCATAATATCACCAACATGTTATTAGTTGACCATTTTTTGATATCAGTTACAGTAACCGAGATATATAAGCTCAAAGTTAGCTAGTAGCGTTTTTACGGTAATTTTCATAGCCATCAATTTTTAAAGTTGTTCTTCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCTTTATAATCAACCCTCAAT</pcr_primer_p1>
		<pcr_primer_p2>TTCTAATTAACGATCAATTACACATT</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>ATCCTTTATAATCAACCCTCAATTAACTACCTACCGTACTGTCCACAGTCTGGAAGGGTATTCTGAATGCGTGATTGGTCGAATTCACGCCCGTAACGATCCACACACCAGCAGTGTCCGTCGTGGCATTGCTCAGGTTTGTAGAAGCCTTCGAGATCGCAACGTGGCAAGAATACTCCTGTAATTAGGGGGTTAATTAGGCAATGTGTAATTGATCGTTAATTAGAA</canonical_amplicon>
		<polymorphic_amplicon>ATCCTTTATAATCAACCCTCAATTAACTACCTACCGTACTGTCCACAGTCTGGAAGGRTATTCTGAATGCGTGATTGGTCGAATTCACGCCCGTAACGATCCACACACCAGCAGTGTCCGTCGTGGCATTGCTCAGGTTTGTAGAAGCCTTCGAGATCGCAACGTGGCAAGAATACTCCTGTAATTAGGGGGTTAATTAGGCAATGTGTAATTGATCGTTAATTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18311</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>58296</contig_pos>
        <strand></strand>
        <context>ATGTCGTCTG[A/G]AAAACGGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCACACCACTCATCGATAGAAATCGATCCATCGACATCCATGTCGTCTG</left_flank>
        <right_flank>AAAACGGAAAATTCCAAATTTTTAAAGAAAAAAAATCTGAAAATCTGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTGATGTCTCTCACAGGAATCGAGATAATTGAACTCAAAGCTGACGGTTTGGGTGGGCTTCTATTGGGGAACAACGCAGCTCATTTTTTAGAAAAAACCGTTTCAAATTGCTTCAAAATGGGAATAATCTGAAAATTCAAAAATGAAAAACATCTTTTTGAATCCGACAATCGTAAAAATCTAGCAAAAAGATCCTAGACCCAATTGGCTGGGGCGCCTTTGGCGCGTTTTCCAAAATCTACCATTTTGCCCAGACACCCTCTTTAAATCACTTCAAAATTGGAATTTTTGAGAAATTCAAAAAGGTGAAAACTTCCAAAAACTTGTTAAATTTAAAATTAAGCTATTAAAAAATTTTTAGACTTGCCAACGTTATGTGGGTCCACTCCGTGCTTAGCCTTGTGGCATGGTGGCTCGTGTCTCAAGTCGTCAGAGAAGCTGAAGCAATCACACCACTCATCGATAGAAATCGATCCATCGACATCCATGTCGTCTGAAAAACGGAAAATTCCAAATTTTTAAAGAAAAAAAATCTGAAAATCTGAAAAGAAATTTTTGAAAAACATTTTTTTTTCAAATTTTTTCCAGTTTCCTTGACCTTGAATTTTGATTTTAAACTCAAAATGATAGAAATTTGAAGCTTTCTCTCATAATTTTCCTATTTCCACATTTAAAACTTACCGCACATATCGATGAACTCCTCAACACATGGCTCGTTTCCTCCACGCTCGAGTGGGCGGAGCTCTGTCTGAAAATTGTTATTTTTGAAGGCATCATTTGCAAACTGTAGTTTTTAATTATGTGAAATCTAAAAATCTAGATTCTGAGAATTCTAAAATAGGTTTCAAATTTCAAAAATATCAACTTTGAGGCAAGTTATGAGATTTTGAAATTTTCAAAAAAACATTCTGATCCTAAAATTTTTGAAGTCAATTTTTAAAACTACAGTACTTTTCTAATTTTTTTGAACTTTTAAAGCTTTTTTCAGATTATTGAT</canonical>
            <polymorphic>TTTTTGATGTCTCTCACAGGAATCGAGATAATTGAACTCAAAGCTGACGGTTTGGGTGGGCTTCTATTGGGGAACAACGCAGCTCATTTTTTAGAAAAAACCGTTTCAAATTGCTTCAAAATGGGAATAATCTGAAAATTCAAAAATGAAAAACATCTTTTTGAATCCGACAATCGTAAAAATCTAGCAAAAAGATCCTAGACCCAATTGGCTGGGGCGCCTTTGGCGCGTTTTCCAAAATCTACCATTTTGCCCAGACACCCTCTTTAAATCACTTCAAAATTGGAATTTTTGAGAAATTCAAAAAGGTGAAAACTTCCAAAAACTTGTTAAATTTAAAATTAAGCTATTAAAAAATTTTTAGACTTGCCAACGTTATGTGGGTCCACTCCGTGCTTAGCCTTGTGGCATGGTGGCTCGTGTCTCAAGTCGTCAGAGAAGCTGAAGCAATCACACCACTCATCGATAGAAATCGATCCATCGACATCCATGTCGTCTGRAAAACGGAAAATTCCAAATTTTTAAAGAAAAAAAATCTGAAAATCTGAAAAGAAATTTTTGAAAAACATTTTTTTTTCAAATTTTTTCCAGTTTCCTTGACCTTGAATTTTGATTTTAAACTCAAAATGATAGAAATTTGAAGCTTTCTCTCATAATTTTCCTATTTCCACATTTAAAACTTACCGCACATATCGATGAACTCCTCAACACATGGCTCGTTTCCTCCACGCTCGAGTGGGCGGAGCTCTGTCTGAAAATTGTTATTTTTGAAGGCATCATTTGCAAACTGTAGTTTTTAATTATGTGAAATCTAAAAATCTAGATTCTGAGAATTCTAAAATAGGTTTCAAATTTCAAAAATATCAACTTTGAGGCAAGTTATGAGATTTTGAAATTTTCAAAAAAACATTCTGATCCTAAAATTTTTGAAGTCAATTTTTAAAACTACAGTACTTTTCTAATTTTTTTGAACTTTTAAAGCTTTTTTCAGATTATTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>267 207 133 85 77 75 63 40 35 10 8</canonical_bands>
                <polymorphic_bands>267 207 133 103 85 77 75 35 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACTTCCAAAAACTTGTTAAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAAATTTCTTTTCAGATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAACTTCCAAAAACTTGTTAAATTTAAAATTAAGCTATTAAAAAATTTTTAGACTTGCCAACGTTATGTGGGTCCACTCCGTGCTTAGCCTTGTGGCATGGTGGCTCGTGTCTCAAGTCGTCAGAGAAGCTGAAGCAATCACACCACTCATCGATAGAAATCGATCCATCGACATCCATGTCGTCTGAAAAACGGAAAATTCCAAATTTTTAAAGAAAAAAAATCTGAAAATCTGAAAAGAAATTTTTG</canonical_amplicon>
		<polymorphic_amplicon>AAAACTTCCAAAAACTTGTTAAATTTAAAATTAAGCTATTAAAAAATTTTTAGACTTGCCAACGTTATGTGGGTCCACTCCGTGCTTAGCCTTGTGGCATGGTGGCTCGTGTCTCAAGTCGTCAGAGAAGCTGAAGCAATCACACCACTCATCGATAGAAATCGATCCATCGACATCCATGTCGTCTGRAAAACGGAAAATTCCAAATTTTTAAAGAAAAAAAATCTGAAAATCTGAAAAGAAATTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18312</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>58151</contig_pos>
        <strand>+</strand>
        <context>AGCTATTAAA[A/C]AATTTTTAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAGGTGAAAACTTCCAAAAACTTGTTAAATTTAAAATTAAGCTATTAAA</left_flank>
        <right_flank>AATTTTTAGACTTGCCAACGTTATGTGGGTCCACTCCGTGCTTAGCCTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAAAATTTATATATCTCTAAAAGAAGCCCATCCAAACCGTCATCTTTGAGCTCAATTATCTCGGTTCTTGTGTAAGATATCAAAAAAGTTTCAACTGATAAATTTTTTATCATAAAATGAACAATATTTTATCAGTTGACAACTTTTTGATGTCTCTCACAGGAATCGAGATAATTGAACTCAAAGCTGACGGTTTGGGTGGGCTTCTATTGGGGAACAACGCAGCTCATTTTTTAGAAAAAACCGTTTCAAATTGCTTCAAAATGGGAATAATCTGAAAATTCAAAAATGAAAAACATCTTTTTGAATCCGACAATCGTAAAAATCTAGCAAAAAGATCCTAGACCCAATTGGCTGGGGCGCCTTTGGCGCGTTTTCCAAAATCTACCATTTTGCCCAGACACCCTCTTTAAATCACTTCAAAATTGGAATTTTTGAGAAATTCAAAAAGGTGAAAACTTCCAAAAACTTGTTAAATTTAAAATTAAGCTATTAAAAAATTTTTAGACTTGCCAACGTTATGTGGGTCCACTCCGTGCTTAGCCTTGTGGCATGGTGGCTCGTGTCTCAAGTCGTCAGAGAAGCTGAAGCAATCACACCACTCATCGATAGAAATCGATCCATCGACATCCATGTCGTCTGAAAAACGGAAAATTCCAAATTTTTAAAGAAAAAAAATCTGAAAATCTGAAAAGAAATTTTTGAAAAACATTTTTTTTTCAAATTTTTTCCAGTTTCCTTGACCTTGAATTTTGATTTTAAACTCAAAATGATAGAAATTTGAAGCTTTCTCTCATAATTTTCCTATTTCCACATTTAAAACTTACCGCACATATCGATGAACTCCTCAACACATGGCTCGTTTCCTCCACGCTCGAGTGGGCGGAGCTCTGTCTGAAAATTGTTATTTTTGAAGGCATCATTTGCAAACTGTAGTTTTTAATTATGTGAAATCTAAAAATCTAGATTCTGAGAATTCTAAAATAGGTTTCAAATTT</canonical>
            <polymorphic>CCAAAAATTTATATATCTCTAAAAGAAGCCCATCCAAACCGTCATCTTTGAGCTCAATTATCTCGGTTCTTGTGTAAGATATCAAAAAAGTTTCAACTGATAAATTTTTTATCATAAAATGAACAATATTTTATCAGTTGACAACTTTTTGATGTCTCTCACAGGAATCGAGATAATTGAACTCAAAGCTGACGGTTTGGGTGGGCTTCTATTGGGGAACAACGCAGCTCATTTTTTAGAAAAAACCGTTTCAAATTGCTTCAAAATGGGAATAATCTGAAAATTCAAAAATGAAAAACATCTTTTTGAATCCGACAATCGTAAAAATCTAGCAAAAAGATCCTAGACCCAATTGGCTGGGGCGCCTTTGGCGCGTTTTCCAAAATCTACCATTTTGCCCAGACACCCTCTTTAAATCACTTCAAAATTGGAATTTTTGAGAAATTCAAAAAGGTGAAAACTTCCAAAAACTTGTTAAATTTAAAATTAAGCTATTAAAMAATTTTTAGACTTGCCAACGTTATGTGGGTCCACTCCGTGCTTAGCCTTGTGGCATGGTGGCTCGTGTCTCAAGTCGTCAGAGAAGCTGAAGCAATCACACCACTCATCGATAGAAATCGATCCATCGACATCCATGTCGTCTGAAAAACGGAAAATTCCAAATTTTTAAAGAAAAAAAATCTGAAAATCTGAAAAGAAATTTTTGAAAAACATTTTTTTTTCAAATTTTTTCCAGTTTCCTTGACCTTGAATTTTGATTTTAAACTCAAAATGATAGAAATTTGAAGCTTTCTCTCATAATTTTCCTATTTCCACATTTAAAACTTACCGCACATATCGATGAACTCCTCAACACATGGCTCGTTTCCTCCACGCTCGAGTGGGCGGAGCTCTGTCTGAAAATTGTTATTTTTGAAGGCATCATTTGCAAACTGTAGTTTTTAATTATGTGAAATCTAAAAATCTAGATTCTGAGAATTCTAAAATAGGTTTCAAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>197 179 154 150 97 37 35 29 26 26 23 19 11 7 5 5</canonical_bands>
                <polymorphic_bands>197 179 177 150 97 37 35 29 26 26 19 11 7 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTTTTCCAAAATCTACCAT</pcr_primer_p1>
		<pcr_primer_p2>GATTTCTATCGATGAGTGGTGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CGTTTTCCAAAATCTACCATTTTGCCCAGACACCCTCTTTAAATCACTTCAAAATTGGAATTTTTGAGAAATTCAAAAAGGTGAAAACTTCCAAAAACTTGTTAAATTTAAAATTAAGCTATTAAAAAATTTTTAGACTTGCCAACGTTATGTGGGTCCACTCCGTGCTTAGCCTTGTGGCATGGTGGCTCGTGTCTCAAGTCGTCAGAGAAGCTGAAGCAATCACACCACTCATCGATAGAAATC</canonical_amplicon>
		<polymorphic_amplicon>CGTTTTCCAAAATCTACCATTTTGCCCAGACACCCTCTTTAAATCACTTCAAAATTGGAATTTTTGAGAAATTCAAAAAGGTGAAAACTTCCAAAAACTTGTTAAATTTAAAATTAAGCTATTAAAMAATTTTTAGACTTGCCAACGTTATGTGGGTCCACTCCGTGCTTAGCCTTGTGGCATGGTGGCTCGTGTCTCAAGTCGTCAGAGAAGCTGAAGCAATCACACCACTCATCGATAGAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18313</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>58063</contig_pos>
        <strand>+</strand>
        <context>GACACCCTCT[C/T]TAAATCACTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCGCCTTTGGCGCGTTTTCCAAAATCTACCATTTTGCCCAGACACCCTCT</left_flank>
        <right_flank>TAAATCACTTCAAAATTGGAATTTTTGAGAAATTCAAAAAGGTGAAAACT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAGATAAGGTTTCTGAAAATCTAAATTACATGATAATCAGAAAATATCTTAGACCCAACTAACTGGGGCGTCTTTGGCGCGTTTCCAAAAATTTATATATCTCTAAAAGAAGCCCATCCAAACCGTCATCTTTGAGCTCAATTATCTCGGTTCTTGTGTAAGATATCAAAAAAGTTTCAACTGATAAATTTTTTATCATAAAATGAACAATATTTTATCAGTTGACAACTTTTTGATGTCTCTCACAGGAATCGAGATAATTGAACTCAAAGCTGACGGTTTGGGTGGGCTTCTATTGGGGAACAACGCAGCTCATTTTTTAGAAAAAACCGTTTCAAATTGCTTCAAAATGGGAATAATCTGAAAATTCAAAAATGAAAAACATCTTTTTGAATCCGACAATCGTAAAAATCTAGCAAAAAGATCCTAGACCCAATTGGCTGGGGCGCCTTTGGCGCGTTTTCCAAAATCTACCATTTTGCCCAGACACCCTCTTTAAATCACTTCAAAATTGGAATTTTTGAGAAATTCAAAAAGGTGAAAACTTCCAAAAACTTGTTAAATTTAAAATTAAGCTATTAAAAAATTTTTAGACTTGCCAACGTTATGTGGGTCCACTCCGTGCTTAGCCTTGTGGCATGGTGGCTCGTGTCTCAAGTCGTCAGAGAAGCTGAAGCAATCACACCACTCATCGATAGAAATCGATCCATCGACATCCATGTCGTCTGAAAAACGGAAAATTCCAAATTTTTAAAGAAAAAAAATCTGAAAATCTGAAAAGAAATTTTTGAAAAACATTTTTTTTTCAAATTTTTTCCAGTTTCCTTGACCTTGAATTTTGATTTTAAACTCAAAATGATAGAAATTTGAAGCTTTCTCTCATAATTTTCCTATTTCCACATTTAAAACTTACCGCACATATCGATGAACTCCTCAACACATGGCTCGTTTCCTCCACGCTCGAGTGGGCGGAGCTCTGTCTGAAAATTGTTATTT</canonical>
            <polymorphic>AAAAAAGATAAGGTTTCTGAAAATCTAAATTACATGATAATCAGAAAATATCTTAGACCCAACTAACTGGGGCGTCTTTGGCGCGTTTCCAAAAATTTATATATCTCTAAAAGAAGCCCATCCAAACCGTCATCTTTGAGCTCAATTATCTCGGTTCTTGTGTAAGATATCAAAAAAGTTTCAACTGATAAATTTTTTATCATAAAATGAACAATATTTTATCAGTTGACAACTTTTTGATGTCTCTCACAGGAATCGAGATAATTGAACTCAAAGCTGACGGTTTGGGTGGGCTTCTATTGGGGAACAACGCAGCTCATTTTTTAGAAAAAACCGTTTCAAATTGCTTCAAAATGGGAATAATCTGAAAATTCAAAAATGAAAAACATCTTTTTGAATCCGACAATCGTAAAAATCTAGCAAAAAGATCCTAGACCCAATTGGCTGGGGCGCCTTTGGCGCGTTTTCCAAAATCTACCATTTTGCCCAGACACCCTCTYTAAATCACTTCAAAATTGGAATTTTTGAGAAATTCAAAAAGGTGAAAACTTCCAAAAACTTGTTAAATTTAAAATTAAGCTATTAAAAAATTTTTAGACTTGCCAACGTTATGTGGGTCCACTCCGTGCTTAGCCTTGTGGCATGGTGGCTCGTGTCTCAAGTCGTCAGAGAAGCTGAAGCAATCACACCACTCATCGATAGAAATCGATCCATCGACATCCATGTCGTCTGAAAAACGGAAAATTCCAAATTTTTAAAGAAAAAAAATCTGAAAATCTGAAAAGAAATTTTTGAAAAACATTTTTTTTTCAAATTTTTTCCAGTTTCCTTGACCTTGAATTTTGATTTTAAACTCAAAATGATAGAAATTTGAAGCTTTCTCTCATAATTTTCCTATTTCCACATTTAAAACTTACCGCACATATCGATGAACTCCTCAACACATGGCTCGTTTCCTCCACGCTCGAGTGGGCGGAGCTCTGTCTGAAAATTGTTATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 186 94 92 69 58</canonical_bands>
                <polymorphic_bands>570 186 94 92 58</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>500 172 94 93 63 58 8 6 6</canonical_bands>
                <polymorphic_bands>563 172 94 93 58 8 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAAAATTCAAAAATGAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATAACGTTGGCAAGTCTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAATTCAAAAATGAAAAACATCTTTTTGAATCCGACAATCGTAAAAATCTAGCAAAAAGATCCTAGACCCAATTGGCTGGGGCGCCTTTGGCGCGTTTTCCAAAATCTACCATTTTGCCCAGACACCCTCTTTAAATCACTTCAAAATTGGAATTTTTGAGAAATTCAAAAAGGTGAAAACTTCCAAAAACTTGTTAAATTTAAAATTAAGCTATTAAAAAATTTTTAGACTTGCCAACGTTAT</canonical_amplicon>
		<polymorphic_amplicon>CTGAAAATTCAAAAATGAAAAACATCTTTTTGAATCCGACAATCGTAAAAATCTAGCAAAAAGATCCTAGACCCAATTGGCTGGGGCGCCTTTGGCGCGTTTTCCAAAATCTACCATTTTGCCCAGACACCCTCTYTAAATCACTTCAAAATTGGAATTTTTGAGAAATTCAAAAAGGTGAAAACTTCCAAAAACTTGTTAAATTTAAAATTAAGCTATTAAAAAATTTTTAGACTTGCCAACGTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18314</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>58050</contig_pos>
        <strand>+</strand>
        <context>ACCATTTTGC[A/C]CAGACACCCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCAATTGGCTGGGGCGCCTTTGGCGCGTTTTCCAAAATCTACCATTTTGC</left_flank>
        <right_flank>CAGACACCCTCTTTAAATCACTTCAAAATTGGAATTTTTGAGAAATTCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCAGGAATCTCAAAAAAGATAAGGTTTCTGAAAATCTAAATTACATGATAATCAGAAAATATCTTAGACCCAACTAACTGGGGCGTCTTTGGCGCGTTTCCAAAAATTTATATATCTCTAAAAGAAGCCCATCCAAACCGTCATCTTTGAGCTCAATTATCTCGGTTCTTGTGTAAGATATCAAAAAAGTTTCAACTGATAAATTTTTTATCATAAAATGAACAATATTTTATCAGTTGACAACTTTTTGATGTCTCTCACAGGAATCGAGATAATTGAACTCAAAGCTGACGGTTTGGGTGGGCTTCTATTGGGGAACAACGCAGCTCATTTTTTAGAAAAAACCGTTTCAAATTGCTTCAAAATGGGAATAATCTGAAAATTCAAAAATGAAAAACATCTTTTTGAATCCGACAATCGTAAAAATCTAGCAAAAAGATCCTAGACCCAATTGGCTGGGGCGCCTTTGGCGCGTTTTCCAAAATCTACCATTTTGCCCAGACACCCTCTTTAAATCACTTCAAAATTGGAATTTTTGAGAAATTCAAAAAGGTGAAAACTTCCAAAAACTTGTTAAATTTAAAATTAAGCTATTAAAAAATTTTTAGACTTGCCAACGTTATGTGGGTCCACTCCGTGCTTAGCCTTGTGGCATGGTGGCTCGTGTCTCAAGTCGTCAGAGAAGCTGAAGCAATCACACCACTCATCGATAGAAATCGATCCATCGACATCCATGTCGTCTGAAAAACGGAAAATTCCAAATTTTTAAAGAAAAAAAATCTGAAAATCTGAAAAGAAATTTTTGAAAAACATTTTTTTTTCAAATTTTTTCCAGTTTCCTTGACCTTGAATTTTGATTTTAAACTCAAAATGATAGAAATTTGAAGCTTTCTCTCATAATTTTCCTATTTCCACATTTAAAACTTACCGCACATATCGATGAACTCCTCAACACATGGCTCGTTTCCTCCACGCTCGAGTGGGCGGAGCTCTGTCTG</canonical>
            <polymorphic>AATCAGGAATCTCAAAAAAGATAAGGTTTCTGAAAATCTAAATTACATGATAATCAGAAAATATCTTAGACCCAACTAACTGGGGCGTCTTTGGCGCGTTTCCAAAAATTTATATATCTCTAAAAGAAGCCCATCCAAACCGTCATCTTTGAGCTCAATTATCTCGGTTCTTGTGTAAGATATCAAAAAAGTTTCAACTGATAAATTTTTTATCATAAAATGAACAATATTTTATCAGTTGACAACTTTTTGATGTCTCTCACAGGAATCGAGATAATTGAACTCAAAGCTGACGGTTTGGGTGGGCTTCTATTGGGGAACAACGCAGCTCATTTTTTAGAAAAAACCGTTTCAAATTGCTTCAAAATGGGAATAATCTGAAAATTCAAAAATGAAAAACATCTTTTTGAATCCGACAATCGTAAAAATCTAGCAAAAAGATCCTAGACCCAATTGGCTGGGGCGCCTTTGGCGCGTTTTCCAAAATCTACCATTTTGCMCAGACACCCTCTTTAAATCACTTCAAAATTGGAATTTTTGAGAAATTCAAAAAGGTGAAAACTTCCAAAAACTTGTTAAATTTAAAATTAAGCTATTAAAAAATTTTTAGACTTGCCAACGTTATGTGGGTCCACTCCGTGCTTAGCCTTGTGGCATGGTGGCTCGTGTCTCAAGTCGTCAGAGAAGCTGAAGCAATCACACCACTCATCGATAGAAATCGATCCATCGACATCCATGTCGTCTGAAAAACGGAAAATTCCAAATTTTTAAAGAAAAAAAATCTGAAAATCTGAAAAGAAATTTTTGAAAAACATTTTTTTTTCAAATTTTTTCCAGTTTCCTTGACCTTGAATTTTGATTTTAAACTCAAAATGATAGAAATTTGAAGCTTTCTCTCATAATTTTCCTATTTCCACATTTAAAACTTACCGCACATATCGATGAACTCCTCAACACATGGCTCGTTTCCTCCACGCTCGAGTGGGCGGAGCTCTGTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAAAATTCAAAAATGAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATAACGTTGGCAAGTCTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAATTCAAAAATGAAAAACATCTTTTTGAATCCGACAATCGTAAAAATCTAGCAAAAAGATCCTAGACCCAATTGGCTGGGGCGCCTTTGGCGCGTTTTCCAAAATCTACCATTTTGCCCAGACACCCTCTTTAAATCACTTCAAAATTGGAATTTTTGAGAAATTCAAAAAGGTGAAAACTTCCAAAAACTTGTTAAATTTAAAATTAAGCTATTAAAAAATTTTTAGACTTGCCAACGTTAT</canonical_amplicon>
		<polymorphic_amplicon>CTGAAAATTCAAAAATGAAAAACATCTTTTTGAATCCGACAATCGTAAAAATCTAGCAAAAAGATCCTAGACCCAATTGGCTGGGGCGCCTTTGGCGCGTTTTCCAAAATCTACCATTTTGCMCAGACACCCTCTTTAAATCACTTCAAAATTGGAATTTTTGAGAAATTCAAAAAGGTGAAAACTTCCAAAAACTTGTTAAATTTAAAATTAAGCTATTAAAAAATTTTTAGACTTGCCAACGTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18315</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>57967</contig_pos>
        <strand>+</strand>
        <context>TTGAATCCGA[A/C]AATCGTAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGGGAATAATCTGAAAATTCAAAAATGAAAAACATCTTTTTGAATCCGA</left_flank>
        <right_flank>AATCGTAAAAATCTAGCAAAAAGATCCTAGACCCAATTGGCTGGGGCGCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCAATTGCAAACCATTTTGAGATTTTCAGGAAAAATTTGGCTGGGGCGCCTTTTACACTTGGAAATTGCTTCAAGTTGGAATAATCAGGAATCTCAAAAAAGATAAGGTTTCTGAAAATCTAAATTACATGATAATCAGAAAATATCTTAGACCCAACTAACTGGGGCGTCTTTGGCGCGTTTCCAAAAATTTATATATCTCTAAAAGAAGCCCATCCAAACCGTCATCTTTGAGCTCAATTATCTCGGTTCTTGTGTAAGATATCAAAAAAGTTTCAACTGATAAATTTTTTATCATAAAATGAACAATATTTTATCAGTTGACAACTTTTTGATGTCTCTCACAGGAATCGAGATAATTGAACTCAAAGCTGACGGTTTGGGTGGGCTTCTATTGGGGAACAACGCAGCTCATTTTTTAGAAAAAACCGTTTCAAATTGCTTCAAAATGGGAATAATCTGAAAATTCAAAAATGAAAAACATCTTTTTGAATCCGACAATCGTAAAAATCTAGCAAAAAGATCCTAGACCCAATTGGCTGGGGCGCCTTTGGCGCGTTTTCCAAAATCTACCATTTTGCCCAGACACCCTCTTTAAATCACTTCAAAATTGGAATTTTTGAGAAATTCAAAAAGGTGAAAACTTCCAAAAACTTGTTAAATTTAAAATTAAGCTATTAAAAAATTTTTAGACTTGCCAACGTTATGTGGGTCCACTCCGTGCTTAGCCTTGTGGCATGGTGGCTCGTGTCTCAAGTCGTCAGAGAAGCTGAAGCAATCACACCACTCATCGATAGAAATCGATCCATCGACATCCATGTCGTCTGAAAAACGGAAAATTCCAAATTTTTAAAGAAAAAAAATCTGAAAATCTGAAAAGAAATTTTTGAAAAACATTTTTTTTTCAAATTTTTTCCAGTTTCCTTGACCTTGAATTTTGATTTTAAACTCAAAATGATAGAAATTTGAAGCTTTCTCTCATAATTTTCCTATTTCCAC</canonical>
            <polymorphic>AGCAATTGCAAACCATTTTGAGATTTTCAGGAAAAATTTGGCTGGGGCGCCTTTTACACTTGGAAATTGCTTCAAGTTGGAATAATCAGGAATCTCAAAAAAGATAAGGTTTCTGAAAATCTAAATTACATGATAATCAGAAAATATCTTAGACCCAACTAACTGGGGCGTCTTTGGCGCGTTTCCAAAAATTTATATATCTCTAAAAGAAGCCCATCCAAACCGTCATCTTTGAGCTCAATTATCTCGGTTCTTGTGTAAGATATCAAAAAAGTTTCAACTGATAAATTTTTTATCATAAAATGAACAATATTTTATCAGTTGACAACTTTTTGATGTCTCTCACAGGAATCGAGATAATTGAACTCAAAGCTGACGGTTTGGGTGGGCTTCTATTGGGGAACAACGCAGCTCATTTTTTAGAAAAAACCGTTTCAAATTGCTTCAAAATGGGAATAATCTGAAAATTCAAAAATGAAAAACATCTTTTTGAATCCGAMAATCGTAAAAATCTAGCAAAAAGATCCTAGACCCAATTGGCTGGGGCGCCTTTGGCGCGTTTTCCAAAATCTACCATTTTGCCCAGACACCCTCTTTAAATCACTTCAAAATTGGAATTTTTGAGAAATTCAAAAAGGTGAAAACTTCCAAAAACTTGTTAAATTTAAAATTAAGCTATTAAAAAATTTTTAGACTTGCCAACGTTATGTGGGTCCACTCCGTGCTTAGCCTTGTGGCATGGTGGCTCGTGTCTCAAGTCGTCAGAGAAGCTGAAGCAATCACACCACTCATCGATAGAAATCGATCCATCGACATCCATGTCGTCTGAAAAACGGAAAATTCCAAATTTTTAAAGAAAAAAAATCTGAAAATCTGAAAAGAAATTTTTGAAAAACATTTTTTTTTCAAATTTTTTCCAGTTTCCTTGACCTTGAATTTTGATTTTAAACTCAAAATGATAGAAATTTGAAGCTTTCTCTCATAATTTTCCTATTTCCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTCAAATTGCTTCAAAATG</pcr_primer_p1>
		<pcr_primer_p2>TTAACAAGTTTTTGGAAGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>GTTTCAAATTGCTTCAAAATGGGAATAATCTGAAAATTCAAAAATGAAAAACATCTTTTTGAATCCGACAATCGTAAAAATCTAGCAAAAAGATCCTAGACCCAATTGGCTGGGGCGCCTTTGGCGCGTTTTCCAAAATCTACCATTTTGCCCAGACACCCTCTTTAAATCACTTCAAAATTGGAATTTTTGAGAAATTCAAAAAGGTGAAAACTTCCAAAAACTTGTTAA</canonical_amplicon>
		<polymorphic_amplicon>GTTTCAAATTGCTTCAAAATGGGAATAATCTGAAAATTCAAAAATGAAAAACATCTTTTTGAATCCGAMAATCGTAAAAATCTAGCAAAAAGATCCTAGACCCAATTGGCTGGGGCGCCTTTGGCGCGTTTTCCAAAATCTACCATTTTGCCCAGACACCCTCTTTAAATCACTTCAAAATTGGAATTTTTGAGAAATTCAAAAAGGTGAAAACTTCCAAAAACTTGTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18316</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>78655</contig_pos>
        <strand></strand>
        <context>TGGGAGAATG[G/A]GCTAAAATGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTTTTTGGTAATTTCTCATTTTATATAAGATATAATTTTTTGGGAGAATG</left_flank>
        <right_flank>GCTAAAATGACAAGAATTCGTAGTTTAAAAAATCAAGAGAAAAAACAGGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTCTCAATTTTTGAAGTTTTTAGCTTTGAAATGAGCCTAAACACGACCCATTTCCTTCGATTTAGATTTTGGGCTAAAACACGCAACGCACGACCGCGACACAGCTGAAATTTTTCTAGGTCATGACCTAATTTTTTTCTAGGTCATGACCTAATTTTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCATGACCTAATTTATTCTAGGTCAACTTTGAGCTCAATTATCTCGGTTCCTGTCAAAGATATCAAAAGTTATCAACTAATAAAATGTTCATCATGATATTAGCAACATTTTATCAATGTATCACTTTTTGATATCCTTTACAAGAAAGTTTTAAACAAGTTATGACGTGTTGAATTTGTATCAGTATTTATTAGCCACCATCTATACTGATTATAATTTTATTACTGTGTCATGTTTTTGGTAATTTCTCATTTTATATAAGATATAATTTTTTGGGAGAATGGGCTAAAATGACAAGAATTCGTAGTTTAAAAAATCAAGAGAAAAAACAGGATTTTATTCGGATTTTGTGTACTGGATTAGCCAGACAAATGTAGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATTGAAAGGGAAAAAGGTTTATTTACCAATGGGATCACCTTTCAAAACCCATTGTCCGCAGTCTGATCCTCAGCAGGAGTGGCGAGCCCTGTTCCAGTGATTCTGCCTTCCAGTGAACCGTAGAACACTGACCGACTAGACCACCAGACCATTGCTCACGCAGTCCTGCCTCTCAAACCTTGAACTGTGCTCGCAGTCTGATCCTCAGCAGGAGTGGCGAGCCCTGTTCCAGTGATTCTGCCTTCCAGTGAACCGTAGAACACTGACCGACTAGACCACCAGCCCATTGCCCACGCAGACCTGCCTCCCAAACCTTGAACGCCAATATTGACTTTTCTAGCCCTTATATATGTGAGAGGAAGGGGCGGGGC</canonical>
            <polymorphic>GATTTCTCAATTTTTGAAGTTTTTAGCTTTGAAATGAGCCTAAACACGACCCATTTCCTTCGATTTAGATTTTGGGCTAAAACACGCAACGCACGACCGCGACACAGCTGAAATTTTTCTAGGTCATGACCTAATTTTTTTCTAGGTCATGACCTAATTTTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCATGACCTAATTTATTCTAGGTCAACTTTGAGCTCAATTATCTCGGTTCCTGTCAAAGATATCAAAAGTTATCAACTAATAAAATGTTCATCATGATATTAGCAACATTTTATCAATGTATCACTTTTTGATATCCTTTACAAGAAAGTTTTAAACAAGTTATGACGTGTTGAATTTGTATCAGTATTTATTAGCCACCATCTATACTGATTATAATTTTATTACTGTGTCATGTTTTTGGTAATTTCTCATTTTATATAAGATATAATTTTTTGGGAGAATGRGCTAAAATGACAAGAATTCGTAGTTTAAAAAATCAAGAGAAAAAACAGGATTTTATTCGGATTTTGTGTACTGGATTAGCCAGACAAATGTAGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATTGAAAGGGAAAAAGGTTTATTTACCAATGGGATCACCTTTCAAAACCCATTGTCCGCAGTCTGATCCTCAGCAGGAGTGGCGAGCCCTGTTCCAGTGATTCTGCCTTCCAGTGAACCGTAGAACACTGACCGACTAGACCACCAGACCATTGCTCACGCAGTCCTGCCTCTCAAACCTTGAACTGTGCTCGCAGTCTGATCCTCAGCAGGAGTGGCGAGCCCTGTTCCAGTGATTCTGCCTTCCAGTGAACCGTAGAACACTGACCGACTAGACCACCAGCCCATTGCCCACGCAGACCTGCCTCCCAAACCTTGAACGCCAATATTGACTTTTCTAGCCCTTATATATGTGAGAGGAAGGGGCGGGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>162 141 135 94 91 78 61 58 42 38 31 31 26 12</canonical_bands>
                <polymorphic_bands>169 162 141 135 94 61 58 42 38 31 31 26 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGTTTTTGGTAATTTCTCATT</pcr_primer_p1>
		<pcr_primer_p2>CTTATTGCATTTGAACCTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>850</pcr_amplicon_size>
		<canonical_amplicon>CATGTTTTTGGTAATTTCTCATTTTATATAAGATATAATTTTTTGGGAGAATGGGCTAAAATGACAAGAATTCGT</canonical_amplicon>
		<polymorphic_amplicon>CATGTTTTTGGTAATTTCTCATTTTATATAAGATATAATTTTTTGGGAGAATGRGCTAAAATGACAAGAATTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18317</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>80961</contig_pos>
        <strand></strand>
        <context>CATTTACCAG[T/C]AGGGAagctt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAG</left_flank>
        <right_flank>AGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCAACTGATAACATATAGCTGATAAAGTGATGAACAATTTATCTGTTAACAGATTTTTGATATCTCTCGCAAGAAATGAGATAAAAGGGCTTAAAGTTGAAAAGTCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTAATCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATATATCTCTATTCCCGTAAGAGATATCAAAAAGTGGTCAACTGATAAAGTATAGCTGAAACTATGATAAACATTTTATCAGTTGAACATTTTTTTGATATCTCTTGTAGGAACCGAGATAATTGTGCTTAAAGTAGGTATAGTTACATTCCCTAAAAGCCCACCATTTCCACACCCGACATCTAGAACCTTCTTTCCTTC</canonical>
            <polymorphic>TGTCAACTGATAACATATAGCTGATAAAGTGATGAACAATTTATCTGTTAACAGATTTTTGATATCTCTCGCAAGAAATGAGATAAAAGGGCTTAAAGTTGAAAAGTCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGYAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTAATCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATATATCTCTATTCCCGTAAGAGATATCAAAAAGTGGTCAACTGATAAAGTATAGCTGAAACTATGATAAACATTTTATCAGTTGAACATTTTTTTGATATCTCTTGTAGGAACCGAGATAATTGTGCTTAAAGTAGGTATAGTTACATTCCCTAAAAGCCCACCATTTCCACACCCGACATCTAGAACCTTCTTTCCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATAAGAAACGGATCAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TAGCTCAAAGTTGAAAAGTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>TGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTA</canonical_amplicon>
		<polymorphic_amplicon>TGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGYAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18318</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>80942</contig_pos>
        <strand></strand>
        <context>CGAAAACGGC[C/T]CAAAGCACCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGC</left_flank>
        <right_flank>CAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAAAAGATATCAAAAAGTTGTCAACTGATAACATATAGCTGATAAAGTGATGAACAATTTATCTGTTAACAGATTTTTGATATCTCTCGCAAGAAATGAGATAAAAGGGCTTAAAGTTGAAAAGTCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTAATCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATATATCTCTATTCCCGTAAGAGATATCAAAAAGTGGTCAACTGATAAAGTATAGCTGAAACTATGATAAACATTTTATCAGTTGAACATTTTTTTGATATCTCTTGTAGGAACCGAGATAATTGTGCTTAAAGTAGGTATAGTTACATTCCCTAAAAGCCCACCATTTCCACACCCGACAT</canonical>
            <polymorphic>GTAAAAGATATCAAAAAGTTGTCAACTGATAACATATAGCTGATAAAGTGATGAACAATTTATCTGTTAACAGATTTTTGATATCTCTCGCAAGAAATGAGATAAAAGGGCTTAAAGTTGAAAAGTCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCYCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTAATCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATATATCTCTATTCCCGTAAGAGATATCAAAAAGTGGTCAACTGATAAAGTATAGCTGAAACTATGATAAACATTTTATCAGTTGAACATTTTTTTGATATCTCTTGTAGGAACCGAGATAATTGTGCTTAAAGTAGGTATAGTTACATTCCCTAAAAGCCCACCATTTCCACACCCGACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>498 324 178</canonical_bands>
                <polymorphic_bands>676 324</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>201 150 120 104 80 71 71 39 28 24 23 20 13 13 12 12 12 7</canonical_bands>
                <polymorphic_bands>229 150 120 104 80 71 71 39 24 23 20 13 13 12 12 12 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTAATTGATAAGAAAATCTCAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TAGCTCAAAGTTGAAAAGTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>295</pcr_amplicon_size>
		<canonical_amplicon>ACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTA</canonical_amplicon>
		<polymorphic_amplicon>ACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCYCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18319</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>80855</contig_pos>
        <strand>+</strand>
        <context>AAACTTGATA[A/G]AACTATTAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATA</left_flank>
        <right_flank>AACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTATCGATTCCAACAACTTCATCAGCACCCCATTGAAGGAAGTCGAATGAGTAGTGACCTGGAAATTTAGATTATCTCGGTTACTGTAAAAGATATCAAAAAGTTGTCAACTGATAACATATAGCTGATAAAGTGATGAACAATTTATCTGTTAACAGATTTTTGATATCTCTCGCAAGAAATGAGATAAAAGGGCTTAAAGTTGAAAAGTCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTAATCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATATATCTCTATTCCCGTAAGAGATATCAAAAAGTGGTCAACTGATAAAGTATAGCTGAAACTATGATAAACATTTTATCAGTTGAACATTTTTT</canonical>
            <polymorphic>AATTATCGATTCCAACAACTTCATCAGCACCCCATTGAAGGAAGTCGAATGAGTAGTGACCTGGAAATTTAGATTATCTCGGTTACTGTAAAAGATATCAAAAAGTTGTCAACTGATAACATATAGCTGATAAAGTGATGAACAATTTATCTGTTAACAGATTTTTGATATCTCTCGCAAGAAATGAGATAAAAGGGCTTAAAGTTGAAAAGTCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATARAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTAATCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATATATCTCTATTCCCGTAAGAGATATCAAAAAGTGGTCAACTGATAAAGTATAGCTGAAACTATGATAAACATTTTATCAGTTGAACATTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGACAGATAACTCGTGAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGATCCGTTTCTTATCAAT</pcr_primer_p2>
		<pcr_amplicon_size>154</pcr_amplicon_size>
		<canonical_amplicon>TTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATARAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18322</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>80805</contig_pos>
        <strand>+</strand>
        <context>CACTCASTTT[C/T]GTAAYTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCACTTT</left_flank>
        <right_flank>GTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAA</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGGAAGCTTCTTTTGGGAATCCTGACAAATTTGAATCATTTCTGGGGAATTATCGATTCCAACAACTTCATCAGCACCCCATTGAAGGAAGTCGAATGAGTAGTGACCTGGAAATTTAGATTATCTCGGTTACTGTAAAAGATATCAAAAAGTTGTCAACTGATAACATATAGCTGATAAAGTGATGAACAATTTATCTGTTAACAGATTTTTGATATCTCTCGCAAGAAATGAGATAAAAGGGCTTAAAGTTGAAAAGTCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTAATCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATATATCTCTATTCCCGTAAGAGATATCAAAAAGTGGTCAACTGA</canonical>
            <polymorphic>TTCTGGAAGCTTCTTTTGGGAATCCTGACAAATTTGAATCATTTCTGGGGAATTATCGATTCCAACAACTTCATCAGCACCCCATTGAAGGAAGTCGAATGAGTAGTGACCTGGAAATTTAGATTATCTCGGTTACTGTAAAAGATATCAAAAAGTTGTCAACTGATAACATATAGCTGATAAAGTGATGAACAATTTATCTGTTAACAGATTTTTGATATCTCTCGCAAGAAATGAGATAAAAGGGCTTAAAGTTGAAAAGTCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCACTTTYGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTAATCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATATATCTCTATTCCCGTAAGAGATATCAAAAAGTGGTCAACTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGTAGTGACCTGGAAATTTAG</pcr_primer_p1>
		<pcr_primer_p2>CAATTCTTGAGATTTTCTTATCAA</pcr_primer_p2>
		<pcr_amplicon_size>503</pcr_amplicon_size>
		<canonical_amplicon>TGAGTAGTGACCTGGAAATTTAGATTATCTCGGTTACTGTAAAAGATATCAAAAAGTTGTCAACTGATAACATATAGCTGATAAAGTGATGAACAATTTATCTGTTAACAGATTTTTGATATCTCTCGCAAGAAATGAGATAAAAGGGCTTAAAGTTGAAAAGTCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTG</canonical_amplicon>
		<polymorphic_amplicon>TGAGTAGTGACCTGGAAATTTAGATTATCTCGGTTACTGTAAAAGATATCAAAAAGTTGTCAACTGATAACATATAGCTGATAAAGTGATGAACAATTTATCTGTTAACAGATTTTTGATATCTCTCGCAAGAAATGAGATAAAAGGGCTTAAAGTTGAAAAGTCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCACTTTYGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18323</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>80801</contig_pos>
        <strand>+</strand>
        <context>AAGTCACTCA[C/G]TTTYGTAAYT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCA</left_flank>
        <right_flank>TTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTG</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGATTCTGGAAGCTTCTTTTGGGAATCCTGACAAATTTGAATCATTTCTGGGGAATTATCGATTCCAACAACTTCATCAGCACCCCATTGAAGGAAGTCGAATGAGTAGTGACCTGGAAATTTAGATTATCTCGGTTACTGTAAAAGATATCAAAAAGTTGTCAACTGATAACATATAGCTGATAAAGTGATGAACAATTTATCTGTTAACAGATTTTTGATATCTCTCGCAAGAAATGAGATAAAAGGGCTTAAAGTTGAAAAGTCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTAATCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATATATCTCTATTCCCGTAAGAGATATCAAAAAGTGGTCAA</canonical>
            <polymorphic>ATGATTCTGGAAGCTTCTTTTGGGAATCCTGACAAATTTGAATCATTTCTGGGGAATTATCGATTCCAACAACTTCATCAGCACCCCATTGAAGGAAGTCGAATGAGTAGTGACCTGGAAATTTAGATTATCTCGGTTACTGTAAAAGATATCAAAAAGTTGTCAACTGATAACATATAGCTGATAAAGTGATGAACAATTTATCTGTTAACAGATTTTTGATATCTCTCGCAAGAAATGAGATAAAAGGGCTTAAAGTTGAAAAGTCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCASTTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTAATCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATATATCTCTATTCCCGTAAGAGATATCAAAAAGTGGTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>256 229 130 96 83 79 29 24 22 19 15 7 5 4 2</canonical_bands>
                <polymorphic_bands>256 229 130 96 83 79 29 24 23 22 15 7 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGTAGTGACCTGGAAATTTAG</pcr_primer_p1>
		<pcr_primer_p2>CAATTCTTGAGATTTTCTTATCAA</pcr_primer_p2>
		<pcr_amplicon_size>503</pcr_amplicon_size>
		<canonical_amplicon>TGAGTAGTGACCTGGAAATTTAGATTATCTCGGTTACTGTAAAAGATATCAAAAAGTTGTCAACTGATAACATATAGCTGATAAAGTGATGAACAATTTATCTGTTAACAGATTTTTGATATCTCTCGCAAGAAATGAGATAAAAGGGCTTAAAGTTGAAAAGTCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTG</canonical_amplicon>
		<polymorphic_amplicon>TGAGTAGTGACCTGGAAATTTAGATTATCTCGGTTACTGTAAAAGATATCAAAAAGTTGTCAACTGATAACATATAGCTGATAAAGTGATGAACAATTTATCTGTTAACAGATTTTTGATATCTCTCGCAAGAAATGAGATAAAAGGGCTTAAAGTTGAAAAGTCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCASTTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18324</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>80771</contig_pos>
        <strand>+</strand>
        <context>TGACACGGTA[C/T]TTTGACAGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTA</left_flank>
        <right_flank>TTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAATTTTTTTGTGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATGTTGGATTCGTGAAAATCGATTTTGGATGATTCTGGAAGCTTCTTTTGGGAATCCTGACAAATTTGAATCATTTCTGGGGAATTATCGATTCCAACAACTTCATCAGCACCCCATTGAAGGAAGTCGAATGAGTAGTGACCTGGAAATTTAGATTATCTCGGTTACTGTAAAAGATATCAAAAAGTTGTCAACTGATAACATATAGCTGATAAAGTGATGAACAATTTATCTGTTAACAGATTTTTGATATCTCTCGCAAGAAATGAGATAAAAGGGCTTAAAGTTGAAAAGTCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTAATCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATATATCTCTA</canonical>
            <polymorphic>TGATGTTGGATTCGTGAAAATCGATTTTGGATGATTCTGGAAGCTTCTTTTGGGAATCCTGACAAATTTGAATCATTTCTGGGGAATTATCGATTCCAACAACTTCATCAGCACCCCATTGAAGGAAGTCGAATGAGTAGTGACCTGGAAATTTAGATTATCTCGGTTACTGTAAAAGATATCAAAAAGTTGTCAACTGATAACATATAGCTGATAAAGTGATGAACAATTTATCTGTTAACAGATTTTTGATATCTCTCGCAAGAAATGAGATAAAAGGGCTTAAAGTTGAAAAGTCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTAYTTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTAATCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATATATCTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGTAGTGACCTGGAAATTTAG</pcr_primer_p1>
		<pcr_primer_p2>CAATTCTTGAGATTTTCTTATCAA</pcr_primer_p2>
		<pcr_amplicon_size>503</pcr_amplicon_size>
		<canonical_amplicon>TGAGTAGTGACCTGGAAATTTAGATTATCTCGGTTACTGTAAAAGATATCAAAAAGTTGTCAACTGATAACATATAGCTGATAAAGTGATGAACAATTTATCTGTTAACAGATTTTTGATATCTCTCGCAAGAAATGAGATAAAAGGGCTTAAAGTTGAAAAGTCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTG</canonical_amplicon>
		<polymorphic_amplicon>TGAGTAGTGACCTGGAAATTTAGATTATCTCGGTTACTGTAAAAGATATCAAAAAGTTGTCAACTGATAACATATAGCTGATAAAGTGATGAACAATTTATCTGTTAACAGATTTTTGATATCTCTCGCAAGAAATGAGATAAAAGGGCTTAAAGTTGAAAAGTCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTAYTTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18325</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>82925</contig_pos>
        <strand>+</strand>
        <context>CGGCTGACTT[C/T]ATTTTAAGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGCTGAGCTTAAGAACGTCTTCACTTGATGCTTTAGTTCCGGCTGACTT</left_flank>
        <right_flank>ATTTTAAGCTGACTTTACCGAGTATAAAGGGACAAATACTTATTTGGGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGATATCTCTAATGCGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGTCACGGTATTTTGACAGATAATTTGTGAAAATCATTCAATTTTGTAAACTTTTTTGGGTTTTTACAGATATTAAATAAAATAACAAACTTGATAGAACTATTAGAAACTAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCTCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGGTTTCTATAAGAGATATCAAAAATTTGTCTACTAATAAATTGCTTATCATAATATCACCTATATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACCTAGATAAATCGGGTTAAAGTTAAGGCGCTTCTGGGACATGTTGTCTGCGGTTTTTTTTAAATTGCTGAGCTTAAGAACGTCTTCACTTGATGCTTTAGTTCCGGCTGACTTCATTTTAAGCTGACTTTACCGAGTATAAAGGGACAAATACTTATTTGGGAGTTCCCTTTACGTCAGCTCCTTGTAAATCAGTACTAAATTGAACGTTCCTTTTACACCATTTTCAACTTTAGAGGAAAAAAAAACTTCCCGACGAAATCTCAAAATCTTGCCATTCTCATCTGCCATAAACATCATTCTTGCATCTTCATTATTCACACTTTCAGATAACAATCACACTCAACAACAGACAATTGAAAGTGTCAAGAGATCCTTCATGTTGATCATCTGAAAAACTAAGACGTTCTCAGTTTGGCATACCAGTTAACCACAAACACCATATACTGATGCAATCAGTGTGATAAGACGGGTCGACAGCGACGTCAGAGGATTCAGAAGGCGTCGCTGCTTCGAATACATTCAAACTCGTATACAAGTGATTGGCATATCTCTATCTATCTATTCGCAAAAAAGGGAAGGAGAGAAAGAACTGGTTACTTTTGACTATGGAAT</canonical>
            <polymorphic>TTGATATCTCTAATGCGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGTCACGGTATTTTGACAGATAATTTGTGAAAATCATTCAATTTTGTAAACTTTTTTGGGTTTTTACAGATATTAAATAAAATAACAAACTTGATAGAACTATTAGAAACTAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCTCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGGTTTCTATAAGAGATATCAAAAATTTGTCTACTAATAAATTGCTTATCATAATATCACCTATATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACCTAGATAAATCGGGTTAAAGTTAAGGCGCTTCTGGGACATGTTGTCTGCGGTTTTTTTTAAATTGCTGAGCTTAAGAACGTCTTCACTTGATGCTTTAGTTCCGGCTGACTTYATTTTAAGCTGACTTTACCGAGTATAAAGGGACAAATACTTATTTGGGAGTTCCCTTTACGTCAGCTCCTTGTAAATCAGTACTAAATTGAACGTTCCTTTTACACCATTTTCAACTTTAGAGGAAAAAAAAACTTCCCGACGAAATCTCAAAATCTTGCCATTCTCATCTGCCATAAACATCATTCTTGCATCTTCATTATTCACACTTTCAGATAACAATCACACTCAACAACAGACAATTGAAAGTGTCAAGAGATCCTTCATGTTGATCATCTGAAAAACTAAGACGTTCTCAGTTTGGCATACCAGTTAACCACAAACACCATATACTGATGCAATCAGTGTGATAAGACGGGTCGACAGCGACGTCAGAGGATTCAGAAGGCGTCGCTGCTTCGAATACATTCAAACTCGTATACAAGTGATTGGCATATCTCTATCTATCTATTCGCAAAAAAGGGAAGGAGAGAAAGAACTGGTTACTTTTGACTATGGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGCTGAGCTTAAGAACGTC</pcr_primer_p1>
		<pcr_primer_p2>GAAGATGCAAGAATGATGTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTGCTGAGCTTAAGAACGTCTTCACTTGATGCTTTAGTTCCGGCTGACTTCATTTTAAGCTGACTTTACCGAGTATAAAGGGACAAATACTTATTTGGGAGTTCCCTTTACGTCAGCTCCTTGTAAATCAGTACTAAATTGAACGTTCCTTTTACACCATTTTCAACTTTAGAGGAAAAAAAAACTTCCCGACGAAATCTCAAAATCTTGCCATTCTCATCTGCCATAAACATCATTCTTGCATCTTC</canonical_amplicon>
		<polymorphic_amplicon>TTGCTGAGCTTAAGAACGTCTTCACTTGATGCTTTAGTTCCGGCTGACTTYATTTTAAGCTGACTTTACCGAGTATAAAGGGACAAATACTTATTTGGGAGTTCCCTTTACGTCAGCTCCTTGTAAATCAGTACTAAATTGAACGTTCCTTTTACACCATTTTCAACTTTAGAGGAAAAAAAAACTTCCCGACGAAATCTCAAAATCTTGCCATTCTCATCTGCCATAAACATCATTCTTGCATCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18326</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>82949</contig_pos>
        <strand>+</strand>
        <context>TTTACCGAGT[A/T]TAAAGGGACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTGATGCTTTAGTTCCGGCTGACTTCATTTTAAGCTGACTTTACCGAGT</left_flank>
        <right_flank>TAAAGGGACAAATACTTATTTGGGAGTTCCCTTTACGTCAGCTCCTTGTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAATTGAGCTCAAAGTGCACTTGGGCGTTTGTCACGGTATTTTGACAGATAATTTGTGAAAATCATTCAATTTTGTAAACTTTTTTGGGTTTTTACAGATATTAAATAAAATAACAAACTTGATAGAACTATTAGAAACTAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCTCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGGTTTCTATAAGAGATATCAAAAATTTGTCTACTAATAAATTGCTTATCATAATATCACCTATATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACCTAGATAAATCGGGTTAAAGTTAAGGCGCTTCTGGGACATGTTGTCTGCGGTTTTTTTTAAATTGCTGAGCTTAAGAACGTCTTCACTTGATGCTTTAGTTCCGGCTGACTTCATTTTAAGCTGACTTTACCGAGTATAAAGGGACAAATACTTATTTGGGAGTTCCCTTTACGTCAGCTCCTTGTAAATCAGTACTAAATTGAACGTTCCTTTTACACCATTTTCAACTTTAGAGGAAAAAAAAACTTCCCGACGAAATCTCAAAATCTTGCCATTCTCATCTGCCATAAACATCATTCTTGCATCTTCATTATTCACACTTTCAGATAACAATCACACTCAACAACAGACAATTGAAAGTGTCAAGAGATCCTTCATGTTGATCATCTGAAAAACTAAGACGTTCTCAGTTTGGCATACCAGTTAACCACAAACACCATATACTGATGCAATCAGTGTGATAAGACGGGTCGACAGCGACGTCAGAGGATTCAGAAGGCGTCGCTGCTTCGAATACATTCAAACTCGTATACAAGTGATTGGCATATCTCTATCTATCTATTCGCAAAAAAGGGAAGGAGAGAAAGAACTGGTTACTTTTGACTATGGAATGAGATGAGTGGGGGGAGGGGAGGA</canonical>
            <polymorphic>ATAATTGAGCTCAAAGTGCACTTGGGCGTTTGTCACGGTATTTTGACAGATAATTTGTGAAAATCATTCAATTTTGTAAACTTTTTTGGGTTTTTACAGATATTAAATAAAATAACAAACTTGATAGAACTATTAGAAACTAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCTCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGGTTTCTATAAGAGATATCAAAAATTTGTCTACTAATAAATTGCTTATCATAATATCACCTATATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACCTAGATAAATCGGGTTAAAGTTAAGGCGCTTCTGGGACATGTTGTCTGCGGTTTTTTTTAAATTGCTGAGCTTAAGAACGTCTTCACTTGATGCTTTAGTTCCGGCTGACTTCATTTTAAGCTGACTTTACCGAGTWTAAAGGGACAAATACTTATTTGGGAGTTCCCTTTACGTCAGCTCCTTGTAAATCAGTACTAAATTGAACGTTCCTTTTACACCATTTTCAACTTTAGAGGAAAAAAAAACTTCCCGACGAAATCTCAAAATCTTGCCATTCTCATCTGCCATAAACATCATTCTTGCATCTTCATTATTCACACTTTCAGATAACAATCACACTCAACAACAGACAATTGAAAGTGTCAAGAGATCCTTCATGTTGATCATCTGAAAAACTAAGACGTTCTCAGTTTGGCATACCAGTTAACCACAAACACCATATACTGATGCAATCAGTGTGATAAGACGGGTCGACAGCGACGTCAGAGGATTCAGAAGGCGTCGCTGCTTCGAATACATTCAAACTCGTATACAAGTGATTGGCATATCTCTATCTATCTATTCGCAAAAAAGGGAAGGAGAGAAAGAACTGGTTACTTTTGACTATGGAATGAGATGAGTGGGGGGAGGGGAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTTCACTTGATGCTTTAGTTC</pcr_primer_p1>
		<pcr_primer_p2>TGAAAGTGTGAATAATGAAGATG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTCTTCACTTGATGCTTTAGTTCCGGCTGACTTCATTTTAAGCTGACTTTACCGAGTATAAAGGGACAAATACTTATTTGGGAGTTCCCTTTACGTCAGCTCCTTGTAAATCAGTACTAAATTGAACGTTCCTTTTACACCATTTTCAACTTTAGAGGAAAAAAAAACTTCCCGACGAAATCTCAAAATCTTGCCATTCTCATCTGCCATAAACATCATTCTTGCATCTTCATTATTCACACTTTCA</canonical_amplicon>
		<polymorphic_amplicon>GTCTTCACTTGATGCTTTAGTTCCGGCTGACTTCATTTTAAGCTGACTTTACCGAGTWTAAAGGGACAAATACTTATTTGGGAGTTCCCTTTACGTCAGCTCCTTGTAAATCAGTACTAAATTGAACGTTCCTTTTACACCATTTTCAACTTTAGAGGAAAAAAAAACTTCCCGACGAAATCTCAAAATCTTGCCATTCTCATCTGCCATAAACATCATTCTTGCATCTTCATTATTCACACTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18327</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>83004</contig_pos>
        <strand>+</strand>
        <context>CTTGTAAATC[A/C]GTACTAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGGACAAATACTTATTTGGGAGTTCCCTTTACGTCAGCTCCTTGTAAATC</left_flank>
        <right_flank>GTACTAAATTGAACGTTCCTTTTACACCATTTTCAACTTTAGAGGAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGAAAATCATTCAATTTTGTAAACTTTTTTGGGTTTTTACAGATATTAAATAAAATAACAAACTTGATAGAACTATTAGAAACTAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCTCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGGTTTCTATAAGAGATATCAAAAATTTGTCTACTAATAAATTGCTTATCATAATATCACCTATATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACCTAGATAAATCGGGTTAAAGTTAAGGCGCTTCTGGGACATGTTGTCTGCGGTTTTTTTTAAATTGCTGAGCTTAAGAACGTCTTCACTTGATGCTTTAGTTCCGGCTGACTTCATTTTAAGCTGACTTTACCGAGTATAAAGGGACAAATACTTATTTGGGAGTTCCCTTTACGTCAGCTCCTTGTAAATCAGTACTAAATTGAACGTTCCTTTTACACCATTTTCAACTTTAGAGGAAAAAAAAACTTCCCGACGAAATCTCAAAATCTTGCCATTCTCATCTGCCATAAACATCATTCTTGCATCTTCATTATTCACACTTTCAGATAACAATCACACTCAACAACAGACAATTGAAAGTGTCAAGAGATCCTTCATGTTGATCATCTGAAAAACTAAGACGTTCTCAGTTTGGCATACCAGTTAACCACAAACACCATATACTGATGCAATCAGTGTGATAAGACGGGTCGACAGCGACGTCAGAGGATTCAGAAGGCGTCGCTGCTTCGAATACATTCAAACTCGTATACAAGTGATTGGCATATCTCTATCTATCTATTCGCAAAAAAGGGAAGGAGAGAAAGAACTGGTTACTTTTGACTATGGAATGAGATGAGTGGGGGGAGGGGAGGATGGTGGGAGGGTTTATAAATACAAGATATCTAAGCATTTGCCATTTTCATTTTGA</canonical>
            <polymorphic>TGTGAAAATCATTCAATTTTGTAAACTTTTTTGGGTTTTTACAGATATTAAATAAAATAACAAACTTGATAGAACTATTAGAAACTAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCTCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGGTTTCTATAAGAGATATCAAAAATTTGTCTACTAATAAATTGCTTATCATAATATCACCTATATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACCTAGATAAATCGGGTTAAAGTTAAGGCGCTTCTGGGACATGTTGTCTGCGGTTTTTTTTAAATTGCTGAGCTTAAGAACGTCTTCACTTGATGCTTTAGTTCCGGCTGACTTCATTTTAAGCTGACTTTACCGAGTATAAAGGGACAAATACTTATTTGGGAGTTCCCTTTACGTCAGCTCCTTGTAAATCMGTACTAAATTGAACGTTCCTTTTACACCATTTTCAACTTTAGAGGAAAAAAAAACTTCCCGACGAAATCTCAAAATCTTGCCATTCTCATCTGCCATAAACATCATTCTTGCATCTTCATTATTCACACTTTCAGATAACAATCACACTCAACAACAGACAATTGAAAGTGTCAAGAGATCCTTCATGTTGATCATCTGAAAAACTAAGACGTTCTCAGTTTGGCATACCAGTTAACCACAAACACCATATACTGATGCAATCAGTGTGATAAGACGGGTCGACAGCGACGTCAGAGGATTCAGAAGGCGTCGCTGCTTCGAATACATTCAAACTCGTATACAAGTGATTGGCATATCTCTATCTATCTATTCGCAAAAAAGGGAAGGAGAGAAAGAACTGGTTACTTTTGACTATGGAATGAGATGAGTGGGGGGAGGGGAGGATGGTGGGAGGGTTTATAAATACAAGATATCTAAGCATTTGCCATTTTCATTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGTACT</site>
                <isoschizomers>
                    <enzyme>Acc113I</enzyme>
                    <enzyme>ScaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTTCACTTGATGCTTTAGTTC</pcr_primer_p1>
		<pcr_primer_p2>TGAAAGTGTGAATAATGAAGATG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTCTTCACTTGATGCTTTAGTTCCGGCTGACTTCATTTTAAGCTGACTTTACCGAGTATAAAGGGACAAATACTTATTTGGGAGTTCCCTTTACGTCAGCTCCTTGTAAATCAGTACTAAATTGAACGTTCCTTTTACACCATTTTCAACTTTAGAGGAAAAAAAAACTTCCCGACGAAATCTCAAAATCTTGCCATTCTCATCTGCCATAAACATCATTCTTGCATCTTCATTATTCACACTTTCA</canonical_amplicon>
		<polymorphic_amplicon>GTCTTCACTTGATGCTTTAGTTCCGGCTGACTTCATTTTAAGCTGACTTTACCGAGTATAAAGGGACAAATACTTATTTGGGAGTTCCCTTTACGTCAGCTCCTTGTAAATCMGTACTAAATTGAACGTTCCTTTTACACCATTTTCAACTTTAGAGGAAAAAAAAACTTCCCGACGAAATCTCAAAATCTTGCCATTCTCATCTGCCATAAACATCATTCTTGCATCTTCATTATTCACACTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18328</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>83026</contig_pos>
        <strand>+</strand>
        <context>AACGTTCCTT[G/T]TACACCATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCCCTTTACGTCAGCTCCTTGTAAATCAGTACTAAATTGAACGTTCCTT</left_flank>
        <right_flank>TACACCATTTTCAACTTTAGAGGAAAAAAAAACTTCCCGACGAAATCTCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTTTTTTGGGTTTTTACAGATATTAAATAAAATAACAAACTTGATAGAACTATTAGAAACTAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCTCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGGTTTCTATAAGAGATATCAAAAATTTGTCTACTAATAAATTGCTTATCATAATATCACCTATATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACCTAGATAAATCGGGTTAAAGTTAAGGCGCTTCTGGGACATGTTGTCTGCGGTTTTTTTTAAATTGCTGAGCTTAAGAACGTCTTCACTTGATGCTTTAGTTCCGGCTGACTTCATTTTAAGCTGACTTTACCGAGTATAAAGGGACAAATACTTATTTGGGAGTTCCCTTTACGTCAGCTCCTTGTAAATCAGTACTAAATTGAACGTTCCTTTTACACCATTTTCAACTTTAGAGGAAAAAAAAACTTCCCGACGAAATCTCAAAATCTTGCCATTCTCATCTGCCATAAACATCATTCTTGCATCTTCATTATTCACACTTTCAGATAACAATCACACTCAACAACAGACAATTGAAAGTGTCAAGAGATCCTTCATGTTGATCATCTGAAAAACTAAGACGTTCTCAGTTTGGCATACCAGTTAACCACAAACACCATATACTGATGCAATCAGTGTGATAAGACGGGTCGACAGCGACGTCAGAGGATTCAGAAGGCGTCGCTGCTTCGAATACATTCAAACTCGTATACAAGTGATTGGCATATCTCTATCTATCTATTCGCAAAAAAGGGAAGGAGAGAAAGAACTGGTTACTTTTGACTATGGAATGAGATGAGTGGGGGGAGGGGAGGATGGTGGGAGGGTTTATAAATACAAGATATCTAAGCATTTGCCATTTTCATTTTGAAGCAGTGACACCCACCGACTAG</canonical>
            <polymorphic>AAACTTTTTTGGGTTTTTACAGATATTAAATAAAATAACAAACTTGATAGAACTATTAGAAACTAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCTCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGGTTTCTATAAGAGATATCAAAAATTTGTCTACTAATAAATTGCTTATCATAATATCACCTATATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACCTAGATAAATCGGGTTAAAGTTAAGGCGCTTCTGGGACATGTTGTCTGCGGTTTTTTTTAAATTGCTGAGCTTAAGAACGTCTTCACTTGATGCTTTAGTTCCGGCTGACTTCATTTTAAGCTGACTTTACCGAGTATAAAGGGACAAATACTTATTTGGGAGTTCCCTTTACGTCAGCTCCTTGTAAATCAGTACTAAATTGAACGTTCCTTKTACACCATTTTCAACTTTAGAGGAAAAAAAAACTTCCCGACGAAATCTCAAAATCTTGCCATTCTCATCTGCCATAAACATCATTCTTGCATCTTCATTATTCACACTTTCAGATAACAATCACACTCAACAACAGACAATTGAAAGTGTCAAGAGATCCTTCATGTTGATCATCTGAAAAACTAAGACGTTCTCAGTTTGGCATACCAGTTAACCACAAACACCATATACTGATGCAATCAGTGTGATAAGACGGGTCGACAGCGACGTCAGAGGATTCAGAAGGCGTCGCTGCTTCGAATACATTCAAACTCGTATACAAGTGATTGGCATATCTCTATCTATCTATTCGCAAAAAAGGGAAGGAGAGAAAGAACTGGTTACTTTTGACTATGGAATGAGATGAGTGGGGGGAGGGGAGGATGGTGGGAGGGTTTATAAATACAAGATATCTAAGCATTTGCCATTTTCATTTTGAAGCAGTGACACCCACCGACTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTTCACTTGATGCTTTAGTTC</pcr_primer_p1>
		<pcr_primer_p2>TGAAAGTGTGAATAATGAAGATG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTCTTCACTTGATGCTTTAGTTCCGGCTGACTTCATTTTAAGCTGACTTTACCGAGTATAAAGGGACAAATACTTATTTGGGAGTTCCCTTTACGTCAGCTCCTTGTAAATCAGTACTAAATTGAACGTTCCTTTTACACCATTTTCAACTTTAGAGGAAAAAAAAACTTCCCGACGAAATCTCAAAATCTTGCCATTCTCATCTGCCATAAACATCATTCTTGCATCTTCATTATTCACACTTTCA</canonical_amplicon>
		<polymorphic_amplicon>GTCTTCACTTGATGCTTTAGTTCCGGCTGACTTCATTTTAAGCTGACTTTACCGAGTATAAAGGGACAAATACTTATTTGGGAGTTCCCTTTACGTCAGCTCCTTGTAAATCAGTACTAAATTGAACGTTCCTTKTACACCATTTTCAACTTTAGAGGAAAAAAAAACTTCCCGACGAAATCTCAAAATCTTGCCATTCTCATCTGCCATAAACATCATTCTTGCATCTTCATTATTCACACTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18329</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>83038</contig_pos>
        <strand>+</strand>
        <context>ACACCATTTT[C/G]AACTTTAGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAGCTCCTTGTAAATCAGTACTAAATTGAACGTTCCTTTTACACCATTTT</left_flank>
        <right_flank>AACTTTAGAGGAAAAAAAAACTTCCCGACGAAATCTCAAAATCTTGCCAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTTACAGATATTAAATAAAATAACAAACTTGATAGAACTATTAGAAACTAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCTCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGGTTTCTATAAGAGATATCAAAAATTTGTCTACTAATAAATTGCTTATCATAATATCACCTATATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACCTAGATAAATCGGGTTAAAGTTAAGGCGCTTCTGGGACATGTTGTCTGCGGTTTTTTTTAAATTGCTGAGCTTAAGAACGTCTTCACTTGATGCTTTAGTTCCGGCTGACTTCATTTTAAGCTGACTTTACCGAGTATAAAGGGACAAATACTTATTTGGGAGTTCCCTTTACGTCAGCTCCTTGTAAATCAGTACTAAATTGAACGTTCCTTTTACACCATTTTCAACTTTAGAGGAAAAAAAAACTTCCCGACGAAATCTCAAAATCTTGCCATTCTCATCTGCCATAAACATCATTCTTGCATCTTCATTATTCACACTTTCAGATAACAATCACACTCAACAACAGACAATTGAAAGTGTCAAGAGATCCTTCATGTTGATCATCTGAAAAACTAAGACGTTCTCAGTTTGGCATACCAGTTAACCACAAACACCATATACTGATGCAATCAGTGTGATAAGACGGGTCGACAGCGACGTCAGAGGATTCAGAAGGCGTCGCTGCTTCGAATACATTCAAACTCGTATACAAGTGATTGGCATATCTCTATCTATCTATTCGCAAAAAAGGGAAGGAGAGAAAGAACTGGTTACTTTTGACTATGGAATGAGATGAGTGGGGGGAGGGGAGGATGGTGGGAGGGTTTATAAATACAAGATATCTAAGCATTTGCCATTTTCATTTTGAAGCAGTGACACCCACCGACTAGGCAAAAGCAGAA</canonical>
            <polymorphic>GTTTTTACAGATATTAAATAAAATAACAAACTTGATAGAACTATTAGAAACTAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCTCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGGTTTCTATAAGAGATATCAAAAATTTGTCTACTAATAAATTGCTTATCATAATATCACCTATATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACCTAGATAAATCGGGTTAAAGTTAAGGCGCTTCTGGGACATGTTGTCTGCGGTTTTTTTTAAATTGCTGAGCTTAAGAACGTCTTCACTTGATGCTTTAGTTCCGGCTGACTTCATTTTAAGCTGACTTTACCGAGTATAAAGGGACAAATACTTATTTGGGAGTTCCCTTTACGTCAGCTCCTTGTAAATCAGTACTAAATTGAACGTTCCTTTTACACCATTTTSAACTTTAGAGGAAAAAAAAACTTCCCGACGAAATCTCAAAATCTTGCCATTCTCATCTGCCATAAACATCATTCTTGCATCTTCATTATTCACACTTTCAGATAACAATCACACTCAACAACAGACAATTGAAAGTGTCAAGAGATCCTTCATGTTGATCATCTGAAAAACTAAGACGTTCTCAGTTTGGCATACCAGTTAACCACAAACACCATATACTGATGCAATCAGTGTGATAAGACGGGTCGACAGCGACGTCAGAGGATTCAGAAGGCGTCGCTGCTTCGAATACATTCAAACTCGTATACAAGTGATTGGCATATCTCTATCTATCTATTCGCAAAAAAGGGAAGGAGAGAAAGAACTGGTTACTTTTGACTATGGAATGAGATGAGTGGGGGGAGGGGAGGATGGTGGGAGGGTTTATAAATACAAGATATCTAAGCATTTGCCATTTTCATTTTGAAGCAGTGACACCCACCGACTAGGCAAAAGCAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTTCACTTGATGCTTTAGTTC</pcr_primer_p1>
		<pcr_primer_p2>TGAAAGTGTGAATAATGAAGATG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTCTTCACTTGATGCTTTAGTTCCGGCTGACTTCATTTTAAGCTGACTTTACCGAGTATAAAGGGACAAATACTTATTTGGGAGTTCCCTTTACGTCAGCTCCTTGTAAATCAGTACTAAATTGAACGTTCCTTTTACACCATTTTCAACTTTAGAGGAAAAAAAAACTTCCCGACGAAATCTCAAAATCTTGCCATTCTCATCTGCCATAAACATCATTCTTGCATCTTCATTATTCACACTTTCA</canonical_amplicon>
		<polymorphic_amplicon>GTCTTCACTTGATGCTTTAGTTCCGGCTGACTTCATTTTAAGCTGACTTTACCGAGTATAAAGGGACAAATACTTATTTGGGAGTTCCCTTTACGTCAGCTCCTTGTAAATCAGTACTAAATTGAACGTTCCTTTTACACCATTTTSAACTTTAGAGGAAAAAAAAACTTCCCGACGAAATCTCAAAATCTTGCCATTCTCATCTGCCATAAACATCATTCTTGCATCTTCATTATTCACACTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18330</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>84759</contig_pos>
        <strand>+</strand>
        <context>TCTCAAAAAT[G/T]AGTGGGAAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGGTCTTTGAGCGTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAAT</left_flank>
        <right_flank>AGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAA</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATTCGGTAACTAAGCTCCCCGTGAACCGATTTTCATGATTTTATTTAGATCAACAGATAATTTTCATGAGAAACAGAATATTTAAAAAAACCCCCTAAGGACAAGAGAAACTATTCCAGAGATTCGTGGTAACCCTAGCCCTGATCATCGTCTCCACCCAAGCCTTCCTCTTCCCGGGAGGTGGAGGTGGTGGTGGATGCGGAGGCGGATGTGGAGGCGGATGTGGAGGAGGTGGTGGTGGAGGATGTCTGCCAACTCTCGGATGCTCAGTTATCTCATTCAACGTCCCAACACTCAAACTTCCCCCTCCACCACCACCACCGTGTGGCGGAGGATGCGGATGCGGAAGAAAGAAGAGAGCAGCCAGCGAGGATTCCAAGTGTACCGATCCAGAGTTGAGAAAGATCATCTTGAATGTGAGTGAGAGGTTTTTTTTAGTATAGTAGAGGTCTTTGAGCGTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAATGAGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAATCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCTAGAAGCGGTTGACTTGTAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTGGGTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGACAAGCTCAGGCTTTTTAACTTTGAATCAAATTATCTCGGTTACTGTAAGAGATATTAAAAAGTAATTAACTAGTAAAATGTAGCTGATGTTGTGATAAACATTTTATCAGTTGACAACTTTTTGATAACTTTCACAGGAAACGAGAAATGTAAGTTATTTTACAATAAGCTGGAGAAAATTGGTTAAAGGGGTTTACTACAGTATGAAATTTTTATGTAATTTGAAATTAAATTCTTGCAGGGAGTCCGCACCACCACCAC</canonical>
            <polymorphic>GAAATTCGGTAACTAAGCTCCCCGTGAACCGATTTTCATGATTTTATTTAGATCAACAGATAATTTTCATGAGAAACAGAATATTTAAAAAAACCCCCTAAGGACAAGAGAAACTATTCCAGAGATTCGTGGTAACCCTAGCCCTGATCATCGTCTCCACCCAAGCCTTCCTCTTCCCGGGAGGTGGAGGTGGTGGTGGATGCGGAGGCGGATGTGGAGGCGGATGTGGAGGAGGTGGTGGTGGAGGATGTCTGCCAACTCTCGGATGCTCAGTTATCTCATTCAACGTCCCAACACTCAAACTTCCCCCTCCACCACCACCACCGTGTGGCGGAGGATGCGGATGCGGAAGAAAGAAGAGAGCAGCCAGCGAGGATTCCAAGTGTACCGATCCAGAGTTGAGAAAGATCATCTTGAATGTGAGTGAGAGGTTTTTTTTAGTATAGTAGAGGTCTTTGAGCGTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAATKAGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAATCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCTAGAAGCGGTTGACTTGTAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTGGGTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGACAAGCTCAGGCTTTTTAACTTTGAATCAAATTATCTCGGTTACTGTAAGAGATATTAAAAAGTAATTAACTAGTAAAATGTAGCTGATGTTGTGATAAACATTTTATCAGTTGACAACTTTTTGATAACTTTCACAGGAAACGAGAAATGTAAGTTATTTTACAATAAGCTGGAGAAAATTGGTTAAAGGGGTTTACTACAGTATGAAATTTTTATGTAATTTGAAATTAAATTCTTGCAGGGAGTCCGCACCACCACCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGTCTTTGAGCGTAATCTGT</pcr_primer_p1>
		<pcr_primer_p2>GTCGGATGAGCTACACTGTT</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>AGGTCTTTGAGCGTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAATGAGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAATCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCTAGAAGCGGTTGACTTGTAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTGGGTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGAC</canonical_amplicon>
		<polymorphic_amplicon>AGGTCTTTGAGCGTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAATKAGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAATCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCTAGAAGCGGTTGACTTGTAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTGGGTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18331</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>85220</contig_pos>
        <strand>+</strand>
        <context>TTTATGTAAT[C/T]TGAAATTAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAGAAAATTGGTTAAAGGGGTTTACTACAGTATGAAATTTTTATGTAAT</left_flank>
        <right_flank>TGAAATTAAATTCTTGCAGGGAGTCCGCACCACCACCACCGAATCCCGAG</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAATGAGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAATCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCTAGAAGCGGTTGACTTGTAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTGGGTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGACAAGCTCAGGCTTTTTAACTTTGAATCAAATTATCTCGGTTACTGTAAGAGATATTAAAAAGTAATTAACTAGTAAAATGTAGCTGATGTTGTGATAAACATTTTATCAGTTGACAACTTTTTGATAACTTTCACAGGAAACGAGAAATGTAAGTTATTTTACAATAAGCTGGAGAAAATTGGTTAAAGGGGTTTACTACAGTATGAAATTTTTATGTAATTTGAAATTAAATTCTTGCAGGGAGTCCGCACCACCACCACCGAATCCCGAGACAACATTGTCGCTAGTCTCAAGGAGAAATACGCTGGAGTCAGGTAAATAACTGGAGGGAATTTCAATTTTTCAATTTTTGTCTAAAGAGCTAACTTGCTTGATGATTAACCAGTTTTAAGCTATGGTTTAGAAGGTACTGAGCGCTTCTCTTTAGTTTTATCAACCTATCAGCTAAAAATCGCTCTGAAATAGCTTAAAATCGATATTTTCCAAAAATTCAAATTATCAATATGATCTCCAAAAAATTTCCTATCGGGTTGTATAATTTTCCTAAAAACTGGATTGCTAGAAGCTACGAAAATCCTCCTTGAAGATTAAAAAAAAAGATTTTTCAAGACAAACCGAAACTTTTCAGTCTATCTGCTGAAACTCGTTCTGAAATAGCTCAAAATCAATATTTTCGAAAAATTCAATTTTTCAAAATAATTTCCAGAAAATTTCCAATCGA</canonical>
            <polymorphic>GTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAATGAGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAATCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCTAGAAGCGGTTGACTTGTAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTGGGTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGACAAGCTCAGGCTTTTTAACTTTGAATCAAATTATCTCGGTTACTGTAAGAGATATTAAAAAGTAATTAACTAGTAAAATGTAGCTGATGTTGTGATAAACATTTTATCAGTTGACAACTTTTTGATAACTTTCACAGGAAACGAGAAATGTAAGTTATTTTACAATAAGCTGGAGAAAATTGGTTAAAGGGGTTTACTACAGTATGAAATTTTTATGTAATYTGAAATTAAATTCTTGCAGGGAGTCCGCACCACCACCACCGAATCCCGAGACAACATTGTCGCTAGTCTCAAGGAGAAATACGCTGGAGTCAGGTAAATAACTGGAGGGAATTTCAATTTTTCAATTTTTGTCTAAAGAGCTAACTTGCTTGATGATTAACCAGTTTTAAGCTATGGTTTAGAAGGTACTGAGCGCTTCTCTTTAGTTTTATCAACCTATCAGCTAAAAATCGCTCTGAAATAGCTTAAAATCGATATTTTCCAAAAATTCAAATTATCAATATGATCTCCAAAAAATTTCCTATCGGGTTGTATAATTTTCCTAAAAACTGGATTGCTAGAAGCTACGAAAATCCTCCTTGAAGATTAAAAAAAAAGATTTTTCAAGACAAACCGAAACTTTTCAGTCTATCTGCTGAAACTCGTTCTGAAATAGCTCAAAATCAATATTTTCGAAAAATTCAATTTTTCAAAATAATTTCCAGAAAATTTCCAATCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>152 143 143 114 101 77 63 35 30 23 20 14 13 13 11 11 8 7 6 6 5 5</canonical_bands>
                <polymorphic_bands>152 143 143 114 101 77 63 35 30 23 20 18 14 13 13 11 8 6 6 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTACAATAAGCTGGAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TCTAAACCATAGCTTAAAACTGG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTTACAATAAGCTGGAGAAAATTGGTTAAAGGGGTTTACTACAGTATGAAATTTTTATGTAATTTGAAATTAAATTCTTGCAGGGAGTCCGCACCACCACCACCGAATCCCGAGACAACATTGTCGCTAGTCTCAAGGAGAAATACGCTGGAGTCAGGTAAATAACTGGAGGGAATTTCAATTTTTCAATTTTTGTCTAAAGAGCTAACTTGCTTGATGATTAACCAGTTTTAAGCTATGGTTTAGA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTACAATAAGCTGGAGAAAATTGGTTAAAGGGGTTTACTACAGTATGAAATTTTTATGTAATYTGAAATTAAATTCTTGCAGGGAGTCCGCACCACCACCACCGAATCCCGAGACAACATTGTCGCTAGTCTCAAGGAGAAATACGCTGGAGTCAGGTAAATAACTGGAGGGAATTTCAATTTTTCAATTTTTGTCTAAAGAGCTAACTTGCTTGATGATTAACCAGTTTTAAGCTATGGTTTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18332</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>85200</contig_pos>
        <strand></strand>
        <context>GTTTACTACA[G/C]TATGAASTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AAGTTATTTTACAATAAGCTGGAGAAAATTGGTTAAAGGGGTTTACTACA</left_flank>
        <right_flank>TATGAAATTTTTATGTAATTTGAAATTAAATTCTTGCAGGGAGTCCGCAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATAGTAGAGGTCTTTGAGCGTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAATGAGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAATCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCTAGAAGCGGTTGACTTGTAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTGGGTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGACAAGCTCAGGCTTTTTAACTTTGAATCAAATTATCTCGGTTACTGTAAGAGATATTAAAAAGTAATTAACTAGTAAAATGTAGCTGATGTTGTGATAAACATTTTATCAGTTGACAACTTTTTGATAACTTTCACAGGAAACGAGAAATGTAAGTTATTTTACAATAAGCTGGAGAAAATTGGTTAAAGGGGTTTACTACAGTATGAAATTTTTATGTAATTTGAAATTAAATTCTTGCAGGGAGTCCGCACCACCACCACCGAATCCCGAGACAACATTGTCGCTAGTCTCAAGGAGAAATACGCTGGAGTCAGGTAAATAACTGGAGGGAATTTCAATTTTTCAATTTTTGTCTAAAGAGCTAACTTGCTTGATGATTAACCAGTTTTAAGCTATGGTTTAGAAGGTACTGAGCGCTTCTCTTTAGTTTTATCAACCTATCAGCTAAAAATCGCTCTGAAATAGCTTAAAATCGATATTTTCCAAAAATTCAAATTATCAATATGATCTCCAAAAAATTTCCTATCGGGTTGTATAATTTTCCTAAAAACTGGATTGCTAGAAGCTACGAAAATCCTCCTTGAAGATTAAAAAAAAAGATTTTTCAAGACAAACCGAAACTTTTCAGTCTATCTGCTGAAACTCGTTCTGAAATAGCTCAAAATCAATATTTTCGAAAAATTCAATTTTTCAAAATAATT</canonical>
            <polymorphic>TATAGTAGAGGTCTTTGAGCGTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAATGAGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAATCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCTAGAAGCGGTTGACTTGTAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTGGGTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGACAAGCTCAGGCTTTTTAACTTTGAATCAAATTATCTCGGTTACTGTAAGAGATATTAAAAAGTAATTAACTAGTAAAATGTAGCTGATGTTGTGATAAACATTTTATCAGTTGACAACTTTTTGATAACTTTCACAGGAAACGAGAAATGTAAGTTATTTTACAATAAGCTGGAGAAAATTGGTTAAAGGGGTTTACTACASTATGAAATTTTTATGTAATTTGAAATTAAATTCTTGCAGGGAGTCCGCACCACCACCACCGAATCCCGAGACAACATTGTCGCTAGTCTCAAGGAGAAATACGCTGGAGTCAGGTAAATAACTGGAGGGAATTTCAATTTTTCAATTTTTGTCTAAAGAGCTAACTTGCTTGATGATTAACCAGTTTTAAGCTATGGTTTAGAAGGTACTGAGCGCTTCTCTTTAGTTTTATCAACCTATCAGCTAAAAATCGCTCTGAAATAGCTTAAAATCGATATTTTCCAAAAATTCAAATTATCAATATGATCTCCAAAAAATTTCCTATCGGGTTGTATAATTTTCCTAAAAACTGGATTGCTAGAAGCTACGAAAATCCTCCTTGAAGATTAAAAAAAAAGATTTTTCAAGACAAACCGAAACTTTTCAGTCTATCTGCTGAAACTCGTTCTGAAATAGCTCAAAATCAATATTTTCGAAAAATTCAATTTTTCAAAATAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>505 469 26</canonical_bands>
                <polymorphic_bands>974 26</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 283 157 59</canonical_bands>
                <polymorphic_bands>658 283 59</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTGTAGCTCATCCGACAAG</pcr_primer_p1>
		<pcr_primer_p2>CGTATTTCTCCTTGAGACTAGC</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>AGTGTAGCTCATCCGACAAGCTCAGGCTTTTTAACTTTGAATCAAATTATCTCGGTTACTGTAAGAGATATTAAAAAGTAATTAACTAGTAAAATGTAGCTGATGTTGTGATAAACATTTTATCAGTTGACAACTTTTTGATAACTTTCACAGGAAACGAGAAATGTAAGTTATTTTACAATAAGCTGGAGAAAATTGGTTAAAGGGGTTTACTACAGTATGAAATTTTTATGTAATTTGAAATTAAATTCTTGCAGGGAGTCCGCACCACCACCACCGAATCCCGAGACAACATTGTCGCTAGTCTCAAGGAGAAATACG</canonical_amplicon>
		<polymorphic_amplicon>AGTGTAGCTCATCCGACAAGCTCAGGCTTTTTAACTTTGAATCAAATTATCTCGGTTACTGTAAGAGATATTAAAAAGTAATTAACTAGTAAAATGTAGCTGATGTTGTGATAAACATTTTATCAGTTGACAACTTTTTGATAACTTTCACAGGAAACGAGAAATGTAAGTTATTTTACAATAAGCTGGAGAAAATTGGTTAAAGGGGTTTACTACASTATGAAATTTTTATGTAATTTGAAATTAAATTCTTGCAGGGAGTCCGCACCACCACCACCGAATCCCGAGACAACATTGTCGCTAGTCTCAAGGAGAAATACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18336</snp_id>
        <super_contig>c011100830.Contig3</super_contig>
        <contig_pos>20132</contig_pos>
        <strand>+</strand>
        <context>GTCTGAAAAA[A/T]TTCATGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGATTTTGGTTTCAAAAATGATAGTTTTGGGCACATTTGAGTCTGAAAAA</left_flank>
        <right_flank>TTCATGAAAACCATATAAAATTTATAATATTGTTTATTCAATATAAAAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGGGCCTTCGCGATAAGATACAGTATTCCAAATAATACCGTTTTGTAGTACTTGTGGAGCTCTATCATTCTTAATTCAGTTGGTTCGAAAATATAGATTCTGAAAGAAATTATGGCAGGGCCCGCGAAGGCCCGGCAAAGGCGATTTCCTTCAAAAAAGATGATTTCCTTCAAAAAAAGATCAAACGGCTCTGAAATTATTGAGTTTTTTATAGAATTTCTGACGTTTTGAGCTCCATATTGCCCGTATTTGGTCAGTTTTAGTTTTCGACCGCTGCGACCGCTGGCGGTCGAAATTCTGAACTGACCAAATATAGGCAATATGGGGCTCAAAATGACGGACATTTCATAAGAAGTTTGGAAATGTACTTGAAAACGAGCCAAAATATGTGGTTAAAGAGATTTTTCGAGTCAAAACATTTTGCATTTTTGACACGTTTTGAATTTGAAGATTTTGGTTTCAAAAATGATAGTTTTGGGCACATTTGAGTCTGAAAAATTTCATGAAAACCATATAAAATTTATAATATTGTTTATTCAATATAAAAATAAATAAAAAATTGACTTTGAAGAATGACTAGTGAAGGTGAACTAGTTTTTAGGTCATGAAAATGTAAAAAAAATATTTTCTAGATTTTCTTTTTTTCAGCATTTTAAAGCAGTTTTCGAATTCCTAACACTCAGAATGTTTCTAAAAATCAAAATTTACATAAAAAACGGTTGAAAACCTCAGAAAACCGTCAAAAACAGCGATTTTCACAAAAGTGGCCCAAATGGCTCAGTGGGTTTTGAGGCCAAAATTTCCGGTCCACAAGGTCAAAAGTTCAATTTTTCTCAGGTTAAAAATTTTTTGATTTTTGTGTGGACCTTGGTAAACAAGTTTTTAGGTCATGAAAATGTTTAGAAAGTGGATTTTTTCCAAAAATTTTTTAAAAAATATTTTCAGATTTTCTTATTTTTTCAGCATTTTGAAGCAGTTTTCGATTTCCAAACACTCACA</canonical>
            <polymorphic>TCGGGCCTTCGCGATAAGATACAGTATTCCAAATAATACCGTTTTGTAGTACTTGTGGAGCTCTATCATTCTTAATTCAGTTGGTTCGAAAATATAGATTCTGAAAGAAATTATGGCAGGGCCCGCGAAGGCCCGGCAAAGGCGATTTCCTTCAAAAAAGATGATTTCCTTCAAAAAAAGATCAAACGGCTCTGAAATTATTGAGTTTTTTATAGAATTTCTGACGTTTTGAGCTCCATATTGCCCGTATTTGGTCAGTTTTAGTTTTCGACCGCTGCGACCGCTGGCGGTCGAAATTCTGAACTGACCAAATATAGGCAATATGGGGCTCAAAATGACGGACATTTCATAAGAAGTTTGGAAATGTACTTGAAAACGAGCCAAAATATGTGGTTAAAGAGATTTTTCGAGTCAAAACATTTTGCATTTTTGACACGTTTTGAATTTGAAGATTTTGGTTTCAAAAATGATAGTTTTGGGCACATTTGAGTCTGAAAAAWTTCATGAAAACCATATAAAATTTATAATATTGTTTATTCAATATAAAAATAAATAAAAAATTGACTTTGAAGAATGACTAGTGAAGGTGAACTAGTTTTTAGGTCATGAAAATGTAAAAAAAATATTTTCTAGATTTTCTTTTTTTCAGCATTTTAAAGCAGTTTTCGAATTCCTAACACTCAGAATGTTTCTAAAAATCAAAATTTACATAAAAAACGGTTGAAAACCTCAGAAAACCGTCAAAAACAGCGATTTTCACAAAAGTGGCCCAAATGGCTCAGTGGGTTTTGAGGCCAAAATTTCCGGTCCACAAGGTCAAAAGTTCAATTTTTCTCAGGTTAAAAATTTTTTGATTTTTGTGTGGACCTTGGTAAACAAGTTTTTAGGTCATGAAAATGTTTAGAAAGTGGATTTTTTCCAAAAATTTTTTAAAAAATATTTTCAGATTTTCTTATTTTTTCAGCATTTTGAAGCAGTTTTCGATTTCCAAACACTCACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>215 150 148 96 79 79 77 55 46 34 21</canonical_bands>
                <polymorphic_bands>215 150 148 96 79 79 77 76 46 34</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>148 110 96 87 79 79 77 73 55 40 35 34 28 21 20 18</canonical_bands>
                <polymorphic_bands>148 110 96 87 79 79 77 76 73 40 35 34 28 20 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACACGTTTTGAATTTGAAGAT</pcr_primer_p1>
		<pcr_primer_p2>TAGGAATTCGAAAACTGCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GACACGTTTTGAATTTGAAGATTTTGGTTTCAAAAATGATAGTTTTGGGCACATTTGAGTCTGAAAAATTTCATGAAAACCATATAAAATTTATAATATTGTTTATTCAATATAAAAATAAATAAAAAATTGACTTTGAAGAATGACTAGTGAAGGTGAACTAGTTTTTAGGTCATGAAAATGTAAAAAAAATATTTTCTAGATTTTCTTTTTTTCAGCATTTTAAAGCAGTTTTCGAATTCCTA</canonical_amplicon>
		<polymorphic_amplicon>GACACGTTTTGAATTTGAAGATTTTGGTTTCAAAAATGATAGTTTTGGGCACATTTGAGTCTGAAAAAWTTCATGAAAACCATATAAAATTTATAATATTGTTTATTCAATATAAAAATAAATAAAAAATTGACTTTGAAGAATGACTAGTGAAGGTGAACTAGTTTTTAGGTCATGAAAATGTAAAAAAAATATTTTCTAGATTTTCTTTTTTTCAGCATTTTAAAGCAGTTTTCGAATTCCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18337</snp_id>
        <super_contig>c011100830.Contig3</super_contig>
        <contig_pos>20586</contig_pos>
        <strand></strand>
        <context>CAGATTTTCT[T/C]ATTTTTTCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAAAGTGGATTTTTTCCAAAAATTTTTTAAAAAATATTTTCAGATTTTCT</left_flank>
        <right_flank>ATTTTTTCAGCATTTTGAAGCAGTTTTCGATTTCCAAACACTCACAATGT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGTTTCAAAAATGATAGTTTTGGGCACATTTGAGTCTGAAAAATTTCATGAAAACCATATAAAATTTATAATATTGTTTATTCAATATAAAAATAAATAAAAAATTGACTTTGAAGAATGACTAGTGAAGGTGAACTAGTTTTTAGGTCATGAAAATGTAAAAAAAATATTTTCTAGATTTTCTTTTTTTCAGCATTTTAAAGCAGTTTTCGAATTCCTAACACTCAGAATGTTTCTAAAAATCAAAATTTACATAAAAAACGGTTGAAAACCTCAGAAAACCGTCAAAAACAGCGATTTTCACAAAAGTGGCCCAAATGGCTCAGTGGGTTTTGAGGCCAAAATTTCCGGTCCACAAGGTCAAAAGTTCAATTTTTCTCAGGTTAAAAATTTTTTGATTTTTGTGTGGACCTTGGTAAACAAGTTTTTAGGTCATGAAAATGTTTAGAAAGTGGATTTTTTCCAAAAATTTTTTAAAAAATATTTTCAGATTTTCTTATTTTTTCAGCATTTTGAAGCAGTTTTCGATTTCCAAACACTCACAATGTCGCTAAAAATCTGATTTGGAAGCCAGAAAACCAGCGAAAAACGACTGGACCAGTTCAAATCCAGAACTCGAGAGATCCATGTTTGTTCATACGAACGCTTTGAAGCCACGTCTTGATATGATACGGTAGTTGAATCTTGGTGCCTGCATGTGAAAAGTTTGGACAGTTTGTGAAGATGATAAAAACACCGAAAGAACAGTCGTGCGCCCTGATCCGAGGCTTTCCGGCGTTTGCAAAGTACGTCGTCTCGACATCTCCCGAGACAGTATGAGAGCGGCTCATTTCAAAGCTCACACACGTGTGTGCCCAAATTTGGCCCAAATCAGGTTAAAAACAGTGGTAACTGCTATTTTGAATTTTTCATGAAATTTCTGACGTTTTGAGCCTCAAATTGCCTATTTGGTCACTTTCGATTTTCGACCGCCTCGACCGCAGGCGGTCAAAAACCAA</canonical>
            <polymorphic>TTGGTTTCAAAAATGATAGTTTTGGGCACATTTGAGTCTGAAAAATTTCATGAAAACCATATAAAATTTATAATATTGTTTATTCAATATAAAAATAAATAAAAAATTGACTTTGAAGAATGACTAGTGAAGGTGAACTAGTTTTTAGGTCATGAAAATGTAAAAAAAATATTTTCTAGATTTTCTTTTTTTCAGCATTTTAAAGCAGTTTTCGAATTCCTAACACTCAGAATGTTTCTAAAAATCAAAATTTACATAAAAAACGGTTGAAAACCTCAGAAAACCGTCAAAAACAGCGATTTTCACAAAAGTGGCCCAAATGGCTCAGTGGGTTTTGAGGCCAAAATTTCCGGTCCACAAGGTCAAAAGTTCAATTTTTCTCAGGTTAAAAATTTTTTGATTTTTGTGTGGACCTTGGTAAACAAGTTTTTAGGTCATGAAAATGTTTAGAAAGTGGATTTTTTCCAAAAATTTTTTAAAAAATATTTTCAGATTTTCTYATTTTTTCAGCATTTTGAAGCAGTTTTCGATTTCCAAACACTCACAATGTCGCTAAAAATCTGATTTGGAAGCCAGAAAACCAGCGAAAAACGACTGGACCAGTTCAAATCCAGAACTCGAGAGATCCATGTTTGTTCATACGAACGCTTTGAAGCCACGTCTTGATATGATACGGTAGTTGAATCTTGGTGCCTGCATGTGAAAAGTTTGGACAGTTTGTGAAGATGATAAAAACACCGAAAGAACAGTCGTGCGCCCTGATCCGAGGCTTTCCGGCGTTTGCAAAGTACGTCGTCTCGACATCTCCCGAGACAGTATGAGAGCGGCTCATTTCAAAGCTCACACACGTGTGTGCCCAAATTTGGCCCAAATCAGGTTAAAAACAGTGGTAACTGCTATTTTGAATTTTTCATGAAATTTCTGACGTTTTGAGCCTCAAATTGCCTATTTGGTCACTTTCGATTTTCGACCGCCTCGACCGCAGGCGGTCAAAAACCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCATTTTAAAGCAGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTAGCGACATTGTGAGTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>364</pcr_amplicon_size>
		<canonical_amplicon>CAGCATTTTAAAGCAGTTTTCGAATTCCTAACACTCAGAATGTTTCTAAAAATCAAAATTTACATAAAAAACGGTTGAAAACCTCAGAAAACCGTCAAAAACAGCGATTTTCACAAAAGTGGCCCAAATGGCTCAGTGGGTTTTGAGGCCAAAATTTCCGGTCCACAAGGTCAAAAGTTCAATTTTTCTCAGGTTAAAAATTTTTTGATTTTTGTGTGGACCTTGGTAAACAAGTTTTTAGGTCATGAAAATGTTTAGAAAGTGGATTTTTTCCAAAAATTTTTTAAAAAATATTTTCAGATTTTCTTATTTTTTCAGCATTTTGAAGCAGTTTTCGATTTCCAAACACTCACAATGTCGCTAA</canonical_amplicon>
		<polymorphic_amplicon>CAGCATTTTAAAGCAGTTTTCGAATTCCTAACACTCAGAATGTTTCTAAAAATCAAAATTTACATAAAAAACGGTTGAAAACCTCAGAAAACCGTCAAAAACAGCGATTTTCACAAAAGTGGCCCAAATGGCTCAGTGGGTTTTGAGGCCAAAATTTCCGGTCCACAAGGTCAAAAGTTCAATTTTTCTCAGGTTAAAAATTTTTTGATTTTTGTGTGGACCTTGGTAAACAAGTTTTTAGGTCATGAAAATGTTTAGAAAGTGGATTTTTTCCAAAAATTTTTTAAAAAATATTTTCAGATTTTCTYATTTTTTCAGCATTTTGAAGCAGTTTTCGATTTCCAAACACTCACAATGTCGCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18338</snp_id>
        <super_contig>c011100830.Contig3</super_contig>
        <contig_pos>30397</contig_pos>
        <strand></strand>
        <context>CTGAGAGGAG[G/A]AGGACAGGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGGGTGAGACAACCATCTGAGATGGTATTTCGAGGGTTGTCTGAGAGGAG</left_flank>
        <right_flank>AGGACAGGAGAGGGGCATTTTACGCTGCGTCTCTCGCTTTTCAACACTCC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCAACATTTTGAGCCCCAACACGACCTATTTTGGTCAACTCTGATTTTCGACCGCGACGCGTTTAGGCGCGTCGCGGTCTGCCCATCGAAAAGTAACAATCAACGAAAAATAGTCGAGTTTGGGCTCAAAATGTCGGAAATTTTATGAGGAATTTGATTATAAACTTTAAATTCAATCAAAATCTGTGGGTAACGAGATTTTTCAAGTGAATCTTCAAGACAAAAAAAAAAGATTTAAAATCCTACATTCTAAATTTAAAAAGGGCTAGAAAAACTCACTTTTTGGGGTCCAGAATCCGCTTAGAATTCATAGAATACAATAAAATAAACAGAGAATATTCAGAAAAATTAAAAATAGAATATCAACTAGATCGCCATGCACAAGGCAGTCGTAGCCAAGTCGAAATTTTGGAAAATCCCAAACAATCGATATATTCTATTTGTTGGAGGGTGAGACAACCATCTGAGATGGTATTTCGAGGGTTGTCTGAGAGGAGGAGGACAGGAGAGGGGCATTTTACGCTGCGTCTCTCGCTTTTCAACACTCCCTGTCTTTTGCCTGGCCGTCCGTGACACCTGGTTCTCTACCAGACAGCCCTACGAGTGTCCTCGTCCTCGTTTACTCTAACCACTCTCCTCTTTTTCAATACTCTCTAAGACTGTGTTAGGTGGCTTGCCATCTAACACAAAAGAGTGAGTTTTGGACCAAAAATCTCAGGAGAACTAGGCAAAATATCTGTTATATAGACACCAGTGATGGGAGGAAACGCATTTTTCCGAAATACGGAAAACGGAAACGGAATCGTAAATTTTTTCCGCGGAAACGGAAAAAAATCGCGCGGAAAACGGAAAACTAAAACGGGAACGGAAATTTTCGTTTTCCTCGACTATTTTTCAGGATTTTTTTCCCTTCAAACATAAAAATATACACTTTTTAACGTTTAAAGACCTTATTTTCATCACTTTCCATGCTTTTTTTCAATCTAGTTTTAATTTGA</canonical>
            <polymorphic>TTCCAACATTTTGAGCCCCAACACGACCTATTTTGGTCAACTCTGATTTTCGACCGCGACGCGTTTAGGCGCGTCGCGGTCTGCCCATCGAAAAGTAACAATCAACGAAAAATAGTCGAGTTTGGGCTCAAAATGTCGGAAATTTTATGAGGAATTTGATTATAAACTTTAAATTCAATCAAAATCTGTGGGTAACGAGATTTTTCAAGTGAATCTTCAAGACAAAAAAAAAAGATTTAAAATCCTACATTCTAAATTTAAAAAGGGCTAGAAAAACTCACTTTTTGGGGTCCAGAATCCGCTTAGAATTCATAGAATACAATAAAATAAACAGAGAATATTCAGAAAAATTAAAAATAGAATATCAACTAGATCGCCATGCACAAGGCAGTCGTAGCCAAGTCGAAATTTTGGAAAATCCCAAACAATCGATATATTCTATTTGTTGGAGGGTGAGACAACCATCTGAGATGGTATTTCGAGGGTTGTCTGAGAGGAGRAGGACAGGAGAGGGGCATTTTACGCTGCGTCTCTCGCTTTTCAACACTCCCTGTCTTTTGCCTGGCCGTCCGTGACACCTGGTTCTCTACCAGACAGCCCTACGAGTGTCCTCGTCCTCGTTTACTCTAACCACTCTCCTCTTTTTCAATACTCTCTAAGACTGTGTTAGGTGGCTTGCCATCTAACACAAAAGAGTGAGTTTTGGACCAAAAATCTCAGGAGAACTAGGCAAAATATCTGTTATATAGACACCAGTGATGGGAGGAAACGCATTTTTCCGAAATACGGAAAACGGAAACGGAATCGTAAATTTTTTCCGCGGAAACGGAAAAAAATCGCGCGGAAAACGGAAAACTAAAACGGGAACGGAAATTTTCGTTTTCCTCGACTATTTTTCAGGATTTTTTTCCCTTCAAACATAAAAATATACACTTTTTAACGTTTAAAGACCTTATTTTCATCACTTTCCATGCTTTTTTTCAATCTAGTTTTAATTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGGGCTAGAAAAACTCACTT</pcr_primer_p1>
		<pcr_primer_p2>AAGACAGGGAGTGTTGAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>296</pcr_amplicon_size>
		<canonical_amplicon>AAAGGGCTAGAAAAACTCACTTTTTGGGGTCCAGAATCCGCTTAGAATTCATAGAATACAATAAAATAAACAGAGAATATTCAGAAAAATTAAAAATAGAATATCAACTAGATCGCCATGCACAAGGCAGTCGTAGCCAAGTCGAAATTTTGGAAAATCCCAAACAATCGATATATTCTATTTGTTGGAGGGTGAGACAACCATCTGAGATGGTATTTCGAGGGTTGTCTGAGAGGAGGAGGACAGGAGAGGGGCATTTTACGCTGCGTCTCTCGCTTTTCAACACTCCCTGTCTT</canonical_amplicon>
		<polymorphic_amplicon>AAAGGGCTAGAAAAACTCACTTTTTGGGGTCCAGAATCCGCTTAGAATTCATAGAATACAATAAAATAAACAGAGAATATTCAGAAAAATTAAAAATAGAATATCAACTAGATCGCCATGCACAAGGCAGTCGTAGCCAAGTCGAAATTTTGGAAAATCCCAAACAATCGATATATTCTATTTGTTGGAGGGTGAGACAACCATCTGAGATGGTATTTCGAGGGTTGTCTGAGAGGAGRAGGACAGGAGAGGGGCATTTTACGCTGCGTCTCTCGCTTTTCAACACTCCCTGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18339</snp_id>
        <super_contig>c011100830.Contig3</super_contig>
        <contig_pos>30364</contig_pos>
        <strand></strand>
        <context>GACAACCATC[T/C]GAGATGGTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATCCCAAACAATCGATATATTCTATTTGTTGGAGGGTGAGACAACCATC</left_flank>
        <right_flank>GAGATGGTATTTCGAGGGTTGTCTGAGAGGAGGAGGACAGGAGAGGGGCA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAAATTGCTATTTTTGAATTTCTCATCAAATTTCCAACATTTTGAGCCCCAACACGACCTATTTTGGTCAACTCTGATTTTCGACCGCGACGCGTTTAGGCGCGTCGCGGTCTGCCCATCGAAAAGTAACAATCAACGAAAAATAGTCGAGTTTGGGCTCAAAATGTCGGAAATTTTATGAGGAATTTGATTATAAACTTTAAATTCAATCAAAATCTGTGGGTAACGAGATTTTTCAAGTGAATCTTCAAGACAAAAAAAAAAGATTTAAAATCCTACATTCTAAATTTAAAAAGGGCTAGAAAAACTCACTTTTTGGGGTCCAGAATCCGCTTAGAATTCATAGAATACAATAAAATAAACAGAGAATATTCAGAAAAATTAAAAATAGAATATCAACTAGATCGCCATGCACAAGGCAGTCGTAGCCAAGTCGAAATTTTGGAAAATCCCAAACAATCGATATATTCTATTTGTTGGAGGGTGAGACAACCATCTGAGATGGTATTTCGAGGGTTGTCTGAGAGGAGGAGGACAGGAGAGGGGCATTTTACGCTGCGTCTCTCGCTTTTCAACACTCCCTGTCTTTTGCCTGGCCGTCCGTGACACCTGGTTCTCTACCAGACAGCCCTACGAGTGTCCTCGTCCTCGTTTACTCTAACCACTCTCCTCTTTTTCAATACTCTCTAAGACTGTGTTAGGTGGCTTGCCATCTAACACAAAAGAGTGAGTTTTGGACCAAAAATCTCAGGAGAACTAGGCAAAATATCTGTTATATAGACACCAGTGATGGGAGGAAACGCATTTTTCCGAAATACGGAAAACGGAAACGGAATCGTAAATTTTTTCCGCGGAAACGGAAAAAAATCGCGCGGAAAACGGAAAACTAAAACGGGAACGGAAATTTTCGTTTTCCTCGACTATTTTTCAGGATTTTTTTCCCTTCAAACATAAAAATATACACTTTTTAACGTTTAAAGACCTTATTTTCATCACTT</canonical>
            <polymorphic>TGGAAATTGCTATTTTTGAATTTCTCATCAAATTTCCAACATTTTGAGCCCCAACACGACCTATTTTGGTCAACTCTGATTTTCGACCGCGACGCGTTTAGGCGCGTCGCGGTCTGCCCATCGAAAAGTAACAATCAACGAAAAATAGTCGAGTTTGGGCTCAAAATGTCGGAAATTTTATGAGGAATTTGATTATAAACTTTAAATTCAATCAAAATCTGTGGGTAACGAGATTTTTCAAGTGAATCTTCAAGACAAAAAAAAAAGATTTAAAATCCTACATTCTAAATTTAAAAAGGGCTAGAAAAACTCACTTTTTGGGGTCCAGAATCCGCTTAGAATTCATAGAATACAATAAAATAAACAGAGAATATTCAGAAAAATTAAAAATAGAATATCAACTAGATCGCCATGCACAAGGCAGTCGTAGCCAAGTCGAAATTTTGGAAAATCCCAAACAATCGATATATTCTATTTGTTGGAGGGTGAGACAACCATCYGAGATGGTATTTCGAGGGTTGTCTGAGAGGAGGAGGACAGGAGAGGGGCATTTTACGCTGCGTCTCTCGCTTTTCAACACTCCCTGTCTTTTGCCTGGCCGTCCGTGACACCTGGTTCTCTACCAGACAGCCCTACGAGTGTCCTCGTCCTCGTTTACTCTAACCACTCTCCTCTTTTTCAATACTCTCTAAGACTGTGTTAGGTGGCTTGCCATCTAACACAAAAGAGTGAGTTTTGGACCAAAAATCTCAGGAGAACTAGGCAAAATATCTGTTATATAGACACCAGTGATGGGAGGAAACGCATTTTTCCGAAATACGGAAAACGGAAACGGAATCGTAAATTTTTTCCGCGGAAACGGAAAAAAATCGCGCGGAAAACGGAAAACTAAAACGGGAACGGAAATTTTCGTTTTCCTCGACTATTTTTCAGGATTTTTTTCCCTTCAAACATAAAAATATACACTTTTTAACGTTTAAAGACCTTATTTTCATCACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>335 251 166 164 60 24</canonical_bands>
                <polymorphic_bands>335 251 188 166 60</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGGGCTAGAAAAACTCACTT</pcr_primer_p1>
		<pcr_primer_p2>AGTGTTGAAAAGCGAGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>AAAGGGCTAGAAAAACTCACTTTTTGGGGTCCAGAATCCGCTTAGAATTCATAGAATACAATAAAATAAACAGAGAATATTCAGAAAAATTAAAAATAGAATATCAACTAGATCGCCATGCACAAGGCAGTCGTAGCCAAGTCGAAATTTTGGAAAATCCCAAACAATCGATATATTCTATTTGTTGGAGGGTGAGACAACCATCTGAGATGGTATTTCGAGGGTTGTCTGAGAGGAGGAGGACAGGAGAGGGGCATTTTACGCTGCGTCTCTCGCTTTTCAACACT</canonical_amplicon>
		<polymorphic_amplicon>AAAGGGCTAGAAAAACTCACTTTTTGGGGTCCAGAATCCGCTTAGAATTCATAGAATACAATAAAATAAACAGAGAATATTCAGAAAAATTAAAAATAGAATATCAACTAGATCGCCATGCACAAGGCAGTCGTAGCCAAGTCGAAATTTTGGAAAATCCCAAACAATCGATATATTCTATTTGTTGGAGGGTGAGACAACCATCYGAGATGGTATTTCGAGGGTTGTCTGAGAGGAGGAGGACAGGAGAGGGGCATTTTACGCTGCGTCTCTCGCTTTTCAACACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18340</snp_id>
        <super_contig>c011100830.Contig3</super_contig>
        <contig_pos>30346</contig_pos>
        <strand></strand>
        <context>CTATTTGTTG[G/A]AGGGTGAGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAAGTCGAAATTTTGGAAAATCCCAAACAATCGATATATTCTATTTGTTG</left_flank>
        <right_flank>AGGGTGAGACAACCATCTGAGATGGTATTTCGAGGGTTGTCTGAGAGGAG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCAGGTTAAAAATAGTGGAAATTGCTATTTTTGAATTTCTCATCAAATTTCCAACATTTTGAGCCCCAACACGACCTATTTTGGTCAACTCTGATTTTCGACCGCGACGCGTTTAGGCGCGTCGCGGTCTGCCCATCGAAAAGTAACAATCAACGAAAAATAGTCGAGTTTGGGCTCAAAATGTCGGAAATTTTATGAGGAATTTGATTATAAACTTTAAATTCAATCAAAATCTGTGGGTAACGAGATTTTTCAAGTGAATCTTCAAGACAAAAAAAAAAGATTTAAAATCCTACATTCTAAATTTAAAAAGGGCTAGAAAAACTCACTTTTTGGGGTCCAGAATCCGCTTAGAATTCATAGAATACAATAAAATAAACAGAGAATATTCAGAAAAATTAAAAATAGAATATCAACTAGATCGCCATGCACAAGGCAGTCGTAGCCAAGTCGAAATTTTGGAAAATCCCAAACAATCGATATATTCTATTTGTTGGAGGGTGAGACAACCATCTGAGATGGTATTTCGAGGGTTGTCTGAGAGGAGGAGGACAGGAGAGGGGCATTTTACGCTGCGTCTCTCGCTTTTCAACACTCCCTGTCTTTTGCCTGGCCGTCCGTGACACCTGGTTCTCTACCAGACAGCCCTACGAGTGTCCTCGTCCTCGTTTACTCTAACCACTCTCCTCTTTTTCAATACTCTCTAAGACTGTGTTAGGTGGCTTGCCATCTAACACAAAAGAGTGAGTTTTGGACCAAAAATCTCAGGAGAACTAGGCAAAATATCTGTTATATAGACACCAGTGATGGGAGGAAACGCATTTTTCCGAAATACGGAAAACGGAAACGGAATCGTAAATTTTTTCCGCGGAAACGGAAAAAAATCGCGCGGAAAACGGAAAACTAAAACGGGAACGGAAATTTTCGTTTTCCTCGACTATTTTTCAGGATTTTTTTCCCTTCAAACATAAAAATATACACTTTTTAACGTTTAAAG</canonical>
            <polymorphic>AAATCAGGTTAAAAATAGTGGAAATTGCTATTTTTGAATTTCTCATCAAATTTCCAACATTTTGAGCCCCAACACGACCTATTTTGGTCAACTCTGATTTTCGACCGCGACGCGTTTAGGCGCGTCGCGGTCTGCCCATCGAAAAGTAACAATCAACGAAAAATAGTCGAGTTTGGGCTCAAAATGTCGGAAATTTTATGAGGAATTTGATTATAAACTTTAAATTCAATCAAAATCTGTGGGTAACGAGATTTTTCAAGTGAATCTTCAAGACAAAAAAAAAAGATTTAAAATCCTACATTCTAAATTTAAAAAGGGCTAGAAAAACTCACTTTTTGGGGTCCAGAATCCGCTTAGAATTCATAGAATACAATAAAATAAACAGAGAATATTCAGAAAAATTAAAAATAGAATATCAACTAGATCGCCATGCACAAGGCAGTCGTAGCCAAGTCGAAATTTTGGAAAATCCCAAACAATCGATATATTCTATTTGTTGRAGGGTGAGACAACCATCTGAGATGGTATTTCGAGGGTTGTCTGAGAGGAGGAGGACAGGAGAGGGGCATTTTACGCTGCGTCTCTCGCTTTTCAACACTCCCTGTCTTTTGCCTGGCCGTCCGTGACACCTGGTTCTCTACCAGACAGCCCTACGAGTGTCCTCGTCCTCGTTTACTCTAACCACTCTCCTCTTTTTCAATACTCTCTAAGACTGTGTTAGGTGGCTTGCCATCTAACACAAAAGAGTGAGTTTTGGACCAAAAATCTCAGGAGAACTAGGCAAAATATCTGTTATATAGACACCAGTGATGGGAGGAAACGCATTTTTCCGAAATACGGAAAACGGAAACGGAATCGTAAATTTTTTCCGCGGAAACGGAAAAAAATCGCGCGGAAAACGGAAAACTAAAACGGGAACGGAAATTTTCGTTTTCCTCGACTATTTTTCAGGATTTTTTTCCCTTCAAACATAAAAATATACACTTTTTAACGTTTAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGGGCTAGAAAAACTCACTT</pcr_primer_p1>
		<pcr_primer_p2>AGTGTTGAAAAGCGAGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>AAAGGGCTAGAAAAACTCACTTTTTGGGGTCCAGAATCCGCTTAGAATTCATAGAATACAATAAAATAAACAGAGAATATTCAGAAAAATTAAAAATAGAATATCAACTAGATCGCCATGCACAAGGCAGTCGTAGCCAAGTCGAAATTTTGGAAAATCCCAAACAATCGATATATTCTATTTGTTGGAGGGTGAGACAACCATCTGAGATGGTATTTCGAGGGTTGTCTGAGAGGAGGAGGACAGGAGAGGGGCATTTTACGCTGCGTCTCTCGCTTTTCAACACT</canonical_amplicon>
		<polymorphic_amplicon>AAAGGGCTAGAAAAACTCACTTTTTGGGGTCCAGAATCCGCTTAGAATTCATAGAATACAATAAAATAAACAGAGAATATTCAGAAAAATTAAAAATAGAATATCAACTAGATCGCCATGCACAAGGCAGTCGTAGCCAAGTCGAAATTTTGGAAAATCCCAAACAATCGATATATTCTATTTGTTGRAGGGTGAGACAACCATCTGAGATGGTATTTCGAGGGTTGTCTGAGAGGAGGAGGACAGGAGAGGGGCATTTTACGCTGCGTCTCTCGCTTTTCAACACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18341</snp_id>
        <super_contig>c011100830.Contig3</super_contig>
        <contig_pos>30305</contig_pos>
        <strand></strand>
        <context>CCAAGTCGAA[A/C]TTTTGGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAGAATATCAACTAGATCGCCATGCACAAGGCAGTCGTAGCCAAGTCGAA</left_flank>
        <right_flank>TTTTGGAAAATCCCAAACAATCGATATATTCTATTTGTTGGAGGGTGAGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTTTGGAGCCAGAAATCAGAAATGCCCAAATTTGGCCCAAATCAGGTTAAAAATAGTGGAAATTGCTATTTTTGAATTTCTCATCAAATTTCCAACATTTTGAGCCCCAACACGACCTATTTTGGTCAACTCTGATTTTCGACCGCGACGCGTTTAGGCGCGTCGCGGTCTGCCCATCGAAAAGTAACAATCAACGAAAAATAGTCGAGTTTGGGCTCAAAATGTCGGAAATTTTATGAGGAATTTGATTATAAACTTTAAATTCAATCAAAATCTGTGGGTAACGAGATTTTTCAAGTGAATCTTCAAGACAAAAAAAAAAGATTTAAAATCCTACATTCTAAATTTAAAAAGGGCTAGAAAAACTCACTTTTTGGGGTCCAGAATCCGCTTAGAATTCATAGAATACAATAAAATAAACAGAGAATATTCAGAAAAATTAAAAATAGAATATCAACTAGATCGCCATGCACAAGGCAGTCGTAGCCAAGTCGAAATTTTGGAAAATCCCAAACAATCGATATATTCTATTTGTTGGAGGGTGAGACAACCATCTGAGATGGTATTTCGAGGGTTGTCTGAGAGGAGGAGGACAGGAGAGGGGCATTTTACGCTGCGTCTCTCGCTTTTCAACACTCCCTGTCTTTTGCCTGGCCGTCCGTGACACCTGGTTCTCTACCAGACAGCCCTACGAGTGTCCTCGTCCTCGTTTACTCTAACCACTCTCCTCTTTTTCAATACTCTCTAAGACTGTGTTAGGTGGCTTGCCATCTAACACAAAAGAGTGAGTTTTGGACCAAAAATCTCAGGAGAACTAGGCAAAATATCTGTTATATAGACACCAGTGATGGGAGGAAACGCATTTTTCCGAAATACGGAAAACGGAAACGGAATCGTAAATTTTTTCCGCGGAAACGGAAAAAAATCGCGCGGAAAACGGAAAACTAAAACGGGAACGGAAATTTTCGTTTTCCTCGACTATTTTTCAGGATTTTTT</canonical>
            <polymorphic>GATTTTTGGAGCCAGAAATCAGAAATGCCCAAATTTGGCCCAAATCAGGTTAAAAATAGTGGAAATTGCTATTTTTGAATTTCTCATCAAATTTCCAACATTTTGAGCCCCAACACGACCTATTTTGGTCAACTCTGATTTTCGACCGCGACGCGTTTAGGCGCGTCGCGGTCTGCCCATCGAAAAGTAACAATCAACGAAAAATAGTCGAGTTTGGGCTCAAAATGTCGGAAATTTTATGAGGAATTTGATTATAAACTTTAAATTCAATCAAAATCTGTGGGTAACGAGATTTTTCAAGTGAATCTTCAAGACAAAAAAAAAAGATTTAAAATCCTACATTCTAAATTTAAAAAGGGCTAGAAAAACTCACTTTTTGGGGTCCAGAATCCGCTTAGAATTCATAGAATACAATAAAATAAACAGAGAATATTCAGAAAAATTAAAAATAGAATATCAACTAGATCGCCATGCACAAGGCAGTCGTAGCCAAGTCGAAMTTTTGGAAAATCCCAAACAATCGATATATTCTATTTGTTGGAGGGTGAGACAACCATCTGAGATGGTATTTCGAGGGTTGTCTGAGAGGAGGAGGACAGGAGAGGGGCATTTTACGCTGCGTCTCTCGCTTTTCAACACTCCCTGTCTTTTGCCTGGCCGTCCGTGACACCTGGTTCTCTACCAGACAGCCCTACGAGTGTCCTCGTCCTCGTTTACTCTAACCACTCTCCTCTTTTTCAATACTCTCTAAGACTGTGTTAGGTGGCTTGCCATCTAACACAAAAGAGTGAGTTTTGGACCAAAAATCTCAGGAGAACTAGGCAAAATATCTGTTATATAGACACCAGTGATGGGAGGAAACGCATTTTTCCGAAATACGGAAAACGGAAACGGAATCGTAAATTTTTTCCGCGGAAACGGAAAAAAATCGCGCGGAAAACGGAAAACTAAAACGGGAACGGAAATTTTCGTTTTCCTCGACTATTTTTCAGGATTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>403 143 100 83 62 52 46 37 31 19 12 12</canonical_bands>
                <polymorphic_bands>503 143 83 62 52 46 37 31 19 12 12</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>403 143 83 62 58 52 42 37 32 31 19 14 12 12</canonical_bands>
                <polymorphic_bands>461 143 83 62 52 42 37 32 31 19 14 12 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTTAAAAAGGGCTAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTCAGACAACCCTCGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>AAATTTAAAAAGGGCTAGAAAAACTCACTTTTTGGGGTCCAGAATCCGCTTAGAATTCATAGAATACAATAAAATAAACAGAGAATATTCAGAAAAATTAAAAATAGAATATCAACTAGATCGCCATGCACAAGGCAGTCGTAGCCAAGTCGAAATTTTGGAAAATCCCAAACAATCGATATATTCTATTTGTTGGAGGGTGAGACAACCATCTGAGATGGTATTTCGAGGGTTGTCTGAG</canonical_amplicon>
		<polymorphic_amplicon>AAATTTAAAAAGGGCTAGAAAAACTCACTTTTTGGGGTCCAGAATCCGCTTAGAATTCATAGAATACAATAAAATAAACAGAGAATATTCAGAAAAATTAAAAATAGAATATCAACTAGATCGCCATGCACAAGGCAGTCGTAGCCAAGTCGAAMTTTTGGAAAATCCCAAACAATCGATATATTCTATTTGTTGGAGGGTGAGACAACCATCTGAGATGGTATTTCGAGGGTTGTCTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18342</snp_id>
        <super_contig>c011100830.Contig3</super_contig>
        <contig_pos>30260</contig_pos>
        <strand></strand>
        <context>AAAAATAGAA[T/C]ATCAACTAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAGAATACAATAAAATAAACAGAGAATATTCAGAAAAATTAAAAATAGAA</left_flank>
        <right_flank>ATCAACTAGATCGCCATGCACAAGGCAGTCGTAGCCAAGTCGAAATTTTG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAATGTTTTTGCGAGAAAAATTGAAATGTTTTTTGAAATTTGGATTTTTGGAGCCAGAAATCAGAAATGCCCAAATTTGGCCCAAATCAGGTTAAAAATAGTGGAAATTGCTATTTTTGAATTTCTCATCAAATTTCCAACATTTTGAGCCCCAACACGACCTATTTTGGTCAACTCTGATTTTCGACCGCGACGCGTTTAGGCGCGTCGCGGTCTGCCCATCGAAAAGTAACAATCAACGAAAAATAGTCGAGTTTGGGCTCAAAATGTCGGAAATTTTATGAGGAATTTGATTATAAACTTTAAATTCAATCAAAATCTGTGGGTAACGAGATTTTTCAAGTGAATCTTCAAGACAAAAAAAAAAGATTTAAAATCCTACATTCTAAATTTAAAAAGGGCTAGAAAAACTCACTTTTTGGGGTCCAGAATCCGCTTAGAATTCATAGAATACAATAAAATAAACAGAGAATATTCAGAAAAATTAAAAATAGAATATCAACTAGATCGCCATGCACAAGGCAGTCGTAGCCAAGTCGAAATTTTGGAAAATCCCAAACAATCGATATATTCTATTTGTTGGAGGGTGAGACAACCATCTGAGATGGTATTTCGAGGGTTGTCTGAGAGGAGGAGGACAGGAGAGGGGCATTTTACGCTGCGTCTCTCGCTTTTCAACACTCCCTGTCTTTTGCCTGGCCGTCCGTGACACCTGGTTCTCTACCAGACAGCCCTACGAGTGTCCTCGTCCTCGTTTACTCTAACCACTCTCCTCTTTTTCAATACTCTCTAAGACTGTGTTAGGTGGCTTGCCATCTAACACAAAAGAGTGAGTTTTGGACCAAAAATCTCAGGAGAACTAGGCAAAATATCTGTTATATAGACACCAGTGATGGGAGGAAACGCATTTTTCCGAAATACGGAAAACGGAAACGGAATCGTAAATTTTTTCCGCGGAAACGGAAAAAAATCGCGCGGAAAACGGAAAACTAAAACG</canonical>
            <polymorphic>TTGAAATGTTTTTGCGAGAAAAATTGAAATGTTTTTTGAAATTTGGATTTTTGGAGCCAGAAATCAGAAATGCCCAAATTTGGCCCAAATCAGGTTAAAAATAGTGGAAATTGCTATTTTTGAATTTCTCATCAAATTTCCAACATTTTGAGCCCCAACACGACCTATTTTGGTCAACTCTGATTTTCGACCGCGACGCGTTTAGGCGCGTCGCGGTCTGCCCATCGAAAAGTAACAATCAACGAAAAATAGTCGAGTTTGGGCTCAAAATGTCGGAAATTTTATGAGGAATTTGATTATAAACTTTAAATTCAATCAAAATCTGTGGGTAACGAGATTTTTCAAGTGAATCTTCAAGACAAAAAAAAAAGATTTAAAATCCTACATTCTAAATTTAAAAAGGGCTAGAAAAACTCACTTTTTGGGGTCCAGAATCCGCTTAGAATTCATAGAATACAATAAAATAAACAGAGAATATTCAGAAAAATTAAAAATAGAAYATCAACTAGATCGCCATGCACAAGGCAGTCGTAGCCAAGTCGAAATTTTGGAAAATCCCAAACAATCGATATATTCTATTTGTTGGAGGGTGAGACAACCATCTGAGATGGTATTTCGAGGGTTGTCTGAGAGGAGGAGGACAGGAGAGGGGCATTTTACGCTGCGTCTCTCGCTTTTCAACACTCCCTGTCTTTTGCCTGGCCGTCCGTGACACCTGGTTCTCTACCAGACAGCCCTACGAGTGTCCTCGTCCTCGTTTACTCTAACCACTCTCCTCTTTTTCAATACTCTCTAAGACTGTGTTAGGTGGCTTGCCATCTAACACAAAAGAGTGAGTTTTGGACCAAAAATCTCAGGAGAACTAGGCAAAATATCTGTTATATAGACACCAGTGATGGGAGGAAACGCATTTTTCCGAAATACGGAAAACGGAAACGGAATCGTAAATTTTTTCCGCGGAAACGGAAAAAAATCGCGCGGAAAACGGAAAACTAAAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACGAGATTTTTCAAGTGAATC</pcr_primer_p1>
		<pcr_primer_p2>AATATATCGATTGTTTGGGATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TAACGAGATTTTTCAAGTGAATCTTCAAGACAAAAAAAAAAGATTTAAAATCCTACATTCTAAATTTAAAAAGGGCTAGAAAAACTCACTTTTTGGGGTCCAGAATCCGCTTAGAATTCATAGAATACAATAAAATAAACAGAGAATATTCAGAAAAATTAAAAATAGAATATCAACTAGATCGCCATGCACAAGGCAGTCGTAGCCAAGTCGAAATTTTGGAAAATCCCAAACAATCGATATATT</canonical_amplicon>
		<polymorphic_amplicon>TAACGAGATTTTTCAAGTGAATCTTCAAGACAAAAAAAAAAGATTTAAAATCCTACATTCTAAATTTAAAAAGGGCTAGAAAAACTCACTTTTTGGGGTCCAGAATCCGCTTAGAATTCATAGAATACAATAAAATAAACAGAGAATATTCAGAAAAATTAAAAATAGAAYATCAACTAGATCGCCATGCACAAGGCAGTCGTAGCCAAGTCGAAATTTTGGAAAATCCCAAACAATCGATATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18343</snp_id>
        <super_contig>c011100830.Contig3</super_contig>
        <contig_pos>30248</contig_pos>
        <strand></strand>
        <context>TTCAGAAAAA[T/A]TAAAAATAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GCTTAGAATTCATAGAATACAATAAAATAAACAGAGAATATTCAGAAAAA</left_flank>
        <right_flank>TAAAAATAGAATATCAACTAGATCGCCATGCACAAGGCAGTCGTAGCCAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCAGAGAAAAATTGAAATGTTTTTGCGAGAAAAATTGAAATGTTTTTTGAAATTTGGATTTTTGGAGCCAGAAATCAGAAATGCCCAAATTTGGCCCAAATCAGGTTAAAAATAGTGGAAATTGCTATTTTTGAATTTCTCATCAAATTTCCAACATTTTGAGCCCCAACACGACCTATTTTGGTCAACTCTGATTTTCGACCGCGACGCGTTTAGGCGCGTCGCGGTCTGCCCATCGAAAAGTAACAATCAACGAAAAATAGTCGAGTTTGGGCTCAAAATGTCGGAAATTTTATGAGGAATTTGATTATAAACTTTAAATTCAATCAAAATCTGTGGGTAACGAGATTTTTCAAGTGAATCTTCAAGACAAAAAAAAAAGATTTAAAATCCTACATTCTAAATTTAAAAAGGGCTAGAAAAACTCACTTTTTGGGGTCCAGAATCCGCTTAGAATTCATAGAATACAATAAAATAAACAGAGAATATTCAGAAAAATTAAAAATAGAATATCAACTAGATCGCCATGCACAAGGCAGTCGTAGCCAAGTCGAAATTTTGGAAAATCCCAAACAATCGATATATTCTATTTGTTGGAGGGTGAGACAACCATCTGAGATGGTATTTCGAGGGTTGTCTGAGAGGAGGAGGACAGGAGAGGGGCATTTTACGCTGCGTCTCTCGCTTTTCAACACTCCCTGTCTTTTGCCTGGCCGTCCGTGACACCTGGTTCTCTACCAGACAGCCCTACGAGTGTCCTCGTCCTCGTTTACTCTAACCACTCTCCTCTTTTTCAATACTCTCTAAGACTGTGTTAGGTGGCTTGCCATCTAACACAAAAGAGTGAGTTTTGGACCAAAAATCTCAGGAGAACTAGGCAAAATATCTGTTATATAGACACCAGTGATGGGAGGAAACGCATTTTTCCGAAATACGGAAAACGGAAACGGAATCGTAAATTTTTTCCGCGGAAACGGAAAAAAATCGCGCGGAAAACGG</canonical>
            <polymorphic>GGCAGAGAAAAATTGAAATGTTTTTGCGAGAAAAATTGAAATGTTTTTTGAAATTTGGATTTTTGGAGCCAGAAATCAGAAATGCCCAAATTTGGCCCAAATCAGGTTAAAAATAGTGGAAATTGCTATTTTTGAATTTCTCATCAAATTTCCAACATTTTGAGCCCCAACACGACCTATTTTGGTCAACTCTGATTTTCGACCGCGACGCGTTTAGGCGCGTCGCGGTCTGCCCATCGAAAAGTAACAATCAACGAAAAATAGTCGAGTTTGGGCTCAAAATGTCGGAAATTTTATGAGGAATTTGATTATAAACTTTAAATTCAATCAAAATCTGTGGGTAACGAGATTTTTCAAGTGAATCTTCAAGACAAAAAAAAAAGATTTAAAATCCTACATTCTAAATTTAAAAAGGGCTAGAAAAACTCACTTTTTGGGGTCCAGAATCCGCTTAGAATTCATAGAATACAATAAAATAAACAGAGAATATTCAGAAAAAWTAAAAATAGAATATCAACTAGATCGCCATGCACAAGGCAGTCGTAGCCAAGTCGAAATTTTGGAAAATCCCAAACAATCGATATATTCTATTTGTTGGAGGGTGAGACAACCATCTGAGATGGTATTTCGAGGGTTGTCTGAGAGGAGGAGGACAGGAGAGGGGCATTTTACGCTGCGTCTCTCGCTTTTCAACACTCCCTGTCTTTTGCCTGGCCGTCCGTGACACCTGGTTCTCTACCAGACAGCCCTACGAGTGTCCTCGTCCTCGTTTACTCTAACCACTCTCCTCTTTTTCAATACTCTCTAAGACTGTGTTAGGTGGCTTGCCATCTAACACAAAAGAGTGAGTTTTGGACCAAAAATCTCAGGAGAACTAGGCAAAATATCTGTTATATAGACACCAGTGATGGGAGGAAACGCATTTTTCCGAAATACGGAAAACGGAAACGGAATCGTAAATTTTTTCCGCGGAAACGGAAAAAAATCGCGCGGAAAACGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>500 211 107 93 68 21</canonical_bands>
                <polymorphic_bands>593 211 107 68 21</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>403 143 83 58 52 42 42 37 32 23 19 18 14 12 12 10</canonical_bands>
                <polymorphic_bands>403 143 100 83 52 42 37 32 23 19 18 14 12 12 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAACGAGATTTTTCAAGTGAATC</pcr_primer_p1>
		<pcr_primer_p2>AATATATCGATTGTTTGGGATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TAACGAGATTTTTCAAGTGAATCTTCAAGACAAAAAAAAAAGATTTAAAATCCTACATTCTAAATTTAAAAAGGGCTAGAAAAACTCACTTTTTGGGGTCCAGAATCCGCTTAGAATTCATAGAATACAATAAAATAAACAGAGAATATTCAGAAAAATTAAAAATAGAATATCAACTAGATCGCCATGCACAAGGCAGTCGTAGCCAAGTCGAAATTTTGGAAAATCCCAAACAATCGATATATT</canonical_amplicon>
		<polymorphic_amplicon>TAACGAGATTTTTCAAGTGAATCTTCAAGACAAAAAAAAAAGATTTAAAATCCTACATTCTAAATTTAAAAAGGGCTAGAAAAACTCACTTTTTGGGGTCCAGAATCCGCTTAGAATTCATAGAATACAATAAAATAAACAGAGAATATTCAGAAAAAWTAAAAATAGAATATCAACTAGATCGCCATGCACAAGGCAGTCGTAGCCAAGTCGAAATTTTGGAAAATCCCAAACAATCGATATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18344</snp_id>
        <super_contig>c011100830.Contig3</super_contig>
        <contig_pos>30198</contig_pos>
        <strand></strand>
        <context>TCCAGAATCC[G/A]CTTAGAATTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCTAAATTTAAAAAGGGCTAGAAAAACTCACTTTTTGGGGTCCAGAATCC</left_flank>
        <right_flank>CTTAGAATTCATAGAATACAATAAAATAAACAGAGAATATTCAGAAAAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGCTCAAAATGTTGGAAATTTCATGAGAAACTCAAAAATACTAAATCCAGGCAGAGAAAAATTGAAATGTTTTTGCGAGAAAAATTGAAATGTTTTTTGAAATTTGGATTTTTGGAGCCAGAAATCAGAAATGCCCAAATTTGGCCCAAATCAGGTTAAAAATAGTGGAAATTGCTATTTTTGAATTTCTCATCAAATTTCCAACATTTTGAGCCCCAACACGACCTATTTTGGTCAACTCTGATTTTCGACCGCGACGCGTTTAGGCGCGTCGCGGTCTGCCCATCGAAAAGTAACAATCAACGAAAAATAGTCGAGTTTGGGCTCAAAATGTCGGAAATTTTATGAGGAATTTGATTATAAACTTTAAATTCAATCAAAATCTGTGGGTAACGAGATTTTTCAAGTGAATCTTCAAGACAAAAAAAAAAGATTTAAAATCCTACATTCTAAATTTAAAAAGGGCTAGAAAAACTCACTTTTTGGGGTCCAGAATCCGCTTAGAATTCATAGAATACAATAAAATAAACAGAGAATATTCAGAAAAATTAAAAATAGAATATCAACTAGATCGCCATGCACAAGGCAGTCGTAGCCAAGTCGAAATTTTGGAAAATCCCAAACAATCGATATATTCTATTTGTTGGAGGGTGAGACAACCATCTGAGATGGTATTTCGAGGGTTGTCTGAGAGGAGGAGGACAGGAGAGGGGCATTTTACGCTGCGTCTCTCGCTTTTCAACACTCCCTGTCTTTTGCCTGGCCGTCCGTGACACCTGGTTCTCTACCAGACAGCCCTACGAGTGTCCTCGTCCTCGTTTACTCTAACCACTCTCCTCTTTTTCAATACTCTCTAAGACTGTGTTAGGTGGCTTGCCATCTAACACAAAAGAGTGAGTTTTGGACCAAAAATCTCAGGAGAACTAGGCAAAATATCTGTTATATAGACACCAGTGATGGGAGGAAACGCATTTTTCCGAAATACGGAAAACGGAAACG</canonical>
            <polymorphic>GGGCTCAAAATGTTGGAAATTTCATGAGAAACTCAAAAATACTAAATCCAGGCAGAGAAAAATTGAAATGTTTTTGCGAGAAAAATTGAAATGTTTTTTGAAATTTGGATTTTTGGAGCCAGAAATCAGAAATGCCCAAATTTGGCCCAAATCAGGTTAAAAATAGTGGAAATTGCTATTTTTGAATTTCTCATCAAATTTCCAACATTTTGAGCCCCAACACGACCTATTTTGGTCAACTCTGATTTTCGACCGCGACGCGTTTAGGCGCGTCGCGGTCTGCCCATCGAAAAGTAACAATCAACGAAAAATAGTCGAGTTTGGGCTCAAAATGTCGGAAATTTTATGAGGAATTTGATTATAAACTTTAAATTCAATCAAAATCTGTGGGTAACGAGATTTTTCAAGTGAATCTTCAAGACAAAAAAAAAAGATTTAAAATCCTACATTCTAAATTTAAAAAGGGCTAGAAAAACTCACTTTTTGGGGTCCAGAATCCRCTTAGAATTCATAGAATACAATAAAATAAACAGAGAATATTCAGAAAAATTAAAAATAGAATATCAACTAGATCGCCATGCACAAGGCAGTCGTAGCCAAGTCGAAATTTTGGAAAATCCCAAACAATCGATATATTCTATTTGTTGGAGGGTGAGACAACCATCTGAGATGGTATTTCGAGGGTTGTCTGAGAGGAGGAGGACAGGAGAGGGGCATTTTACGCTGCGTCTCTCGCTTTTCAACACTCCCTGTCTTTTGCCTGGCCGTCCGTGACACCTGGTTCTCTACCAGACAGCCCTACGAGTGTCCTCGTCCTCGTTTACTCTAACCACTCTCCTCTTTTTCAATACTCTCTAAGACTGTGTTAGGTGGCTTGCCATCTAACACAAAAGAGTGAGTTTTGGACCAAAAATCTCAGGAGAACTAGGCAAAATATCTGTTATATAGACACCAGTGATGGGAGGAAACGCATTTTTCCGAAATACGGAAAACGGAAACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>502 253 245</canonical_bands>
                <polymorphic_bands>747 253</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAACGAGATTTTTCAAGTGAATC</pcr_primer_p1>
		<pcr_primer_p2>AATATATCGATTGTTTGGGATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TAACGAGATTTTTCAAGTGAATCTTCAAGACAAAAAAAAAAGATTTAAAATCCTACATTCTAAATTTAAAAAGGGCTAGAAAAACTCACTTTTTGGGGTCCAGAATCCGCTTAGAATTCATAGAATACAATAAAATAAACAGAGAATATTCAGAAAAATTAAAAATAGAATATCAACTAGATCGCCATGCACAAGGCAGTCGTAGCCAAGTCGAAATTTTGGAAAATCCCAAACAATCGATATATT</canonical_amplicon>
		<polymorphic_amplicon>TAACGAGATTTTTCAAGTGAATCTTCAAGACAAAAAAAAAAGATTTAAAATCCTACATTCTAAATTTAAAAAGGGCTAGAAAAACTCACTTTTTGGGGTCCAGAATCCRCTTAGAATTCATAGAATACAATAAAATAAACAGAGAATATTCAGAAAAATTAAAAATAGAATATCAACTAGATCGCCATGCACAAGGCAGTCGTAGCCAAGTCGAAATTTTGGAAAATCCCAAACAATCGATATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18348</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>39022</contig_pos>
        <strand></strand>
        <context>GGAAATATTA[A/G]CTAATTGGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAGAGAGCCAATGGAAGAGTCACCGATATACATCTAATGGGAAATATTA</left_flank>
        <right_flank>CTAATTGGAACAGGAAGTGTTGTTTCGATCTAGAAAAGAAGTAAAAACAA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAACTATCAAAAATATTGCTAAAACTAAATATATACAATTTCAAATGAAATGAACCAATAGAAGAAAATTGAAAAAAAAAATTCTCGAAAAAAAAGAAAGTTTTCAAAAAAAAAAAATCATGAAAGCGGTGGTTCAATAACTCTCATAGTCCTAAAACACTAGGGTGAAACATACATTTTTTGAAAATTGAGTCTGATTTGCTTGAGGATTTCGGTACTTGTAAATTCAAAAAATAAGCGGAATCACTAATTGTAAGTTAGTTACGGTTGAATATAAAGCTAAAATTAATCTCAACTTTCACAAAATTTATCTTGCTACCTGTCAAAGAGTTTAAGAAGTGGTCCACTAACAAAATGTGTCATACTATTAGAAACATTTTTATTTTCACGGTGGTGAGCCAGAAAATGGGAGGAAATATCAATACCCAGGTAAGAAGTTCTTTTTTCGGAGAGAGCCAATGGAAGAGTCACCGATATACATCTAATGGGAAATATTAACTAATTGGAACAGGAAGTGTTGTTTCGATCTAGAAAAGAAGTAAAAACAAGTCGTGACCTGGAAAAATCCAAACATCCGGACCCAGATTCTCATGGAACTCATCAAAAAACAAAGAAAAAATTGGATGACGATAACCATCTGAGGCAAAAAAAAGAAGGAGAAAAGGTCTAGAAGAAGAAGCGTCTAGATAATTATGATTATTAATCGGATTTAGATGTGCAAAAGAGAAAAAAGACTTGAAAATAATACAATTAACATTAAGGCGTGTGGGTTTCAAGAGAAAAATAATGTGGGTTTCTCTTCTTCTGGAGCGCAACACAAACCGTCTGATCGACGATGATGATGAGGAAGAAGAGGAAAAGATTTTTGGTTGTTTCTTCGTCTCCTTCTGATGACGTCAAAATCTGACGGGTACGTACGGATCATCGGGAGGTCTTCTTCTACTTCTGGAGACTGCTAGGCACCGTGGGAAACAAAGTTTTTTTCTGCGCGGCGTTTG</canonical>
            <polymorphic>AGAAACTATCAAAAATATTGCTAAAACTAAATATATACAATTTCAAATGAAATGAACCAATAGAAGAAAATTGAAAAAAAAAATTCTCGAAAAAAAAGAAAGTTTTCAAAAAAAAAAAATCATGAAAGCGGTGGTTCAATAACTCTCATAGTCCTAAAACACTAGGGTGAAACATACATTTTTTGAAAATTGAGTCTGATTTGCTTGAGGATTTCGGTACTTGTAAATTCAAAAAATAAGCGGAATCACTAATTGTAAGTTAGTTACGGTTGAATATAAAGCTAAAATTAATCTCAACTTTCACAAAATTTATCTTGCTACCTGTCAAAGAGTTTAAGAAGTGGTCCACTAACAAAATGTGTCATACTATTAGAAACATTTTTATTTTCACGGTGGTGAGCCAGAAAATGGGAGGAAATATCAATACCCAGGTAAGAAGTTCTTTTTTCGGAGAGAGCCAATGGAAGAGTCACCGATATACATCTAATGGGAAATATTARCTAATTGGAACAGGAAGTGTTGTTTCGATCTAGAAAAGAAGTAAAAACAAGTCGTGACCTGGAAAAATCCAAACATCCGGACCCAGATTCTCATGGAACTCATCAAAAAACAAAGAAAAAATTGGATGACGATAACCATCTGAGGCAAAAAAAAGAAGGAGAAAAGGTCTAGAAGAAGAAGCGTCTAGATAATTATGATTATTAATCGGATTTAGATGTGCAAAAGAGAAAAAAGACTTGAAAATAATACAATTAACATTAAGGCGTGTGGGTTTCAAGAGAAAAATAATGTGGGTTTCTCTTCTTCTGGAGCGCAACACAAACCGTCTGATCGACGATGATGATGAGGAAGAAGAGGAAAAGATTTTTGGTTGTTTCTTCGTCTCCTTCTGATGACGTCAAAATCTGACGGGTACGTACGGATCATCGGGAGGTCTTCTTCTACTTCTGGAGACTGCTAGGCACCGTGGGAAACAAAGTTTTTTTCTGCGCGGCGTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>288 241 205 163 51 46 6</canonical_bands>
                <polymorphic_bands>368 288 241 51 46 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATCAATACCCAGGTAAGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>CTAGACCTTTTCTCCTTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>ATATCAATACCCAGGTAAGAAGTTCTTTTTTCGGAGAGAGCCAATGGAAGAGTCACCGATATACATCTAATGGGAAATATTAACTAATTGGAACAGGAAGTGTTGTTTCGATCTAGAAAAGAAGTAAAAACAAGTCGTGACCTGGAAAAATCCAAACATCCGGACCCAGATTCTCATGGAACTCATCAAAAAACAAAGAAAAAATTGGATGACGATAACCATCTGAGGCAAAAAAAAGAAGGAGAAAAGGTCTAG</canonical_amplicon>
		<polymorphic_amplicon>ATATCAATACCCAGGTAAGAAGTTCTTTTTTCGGAGAGAGCCAATGGAAGAGTCACCGATATACATCTAATGGGAAATATTARCTAATTGGAACAGGAAGTGTTGTTTCGATCTAGAAAAGAAGTAAAAACAAGTCGTGACCTGGAAAAATCCAAACATCCGGACCCAGATTCTCATGGAACTCATCAAAAAACAAAGAAAAAATTGGATGACGATAACCATCTGAGGCAAAAAAAAGAAGGAGAAAAGGTCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18367</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>38979</contig_pos>
        <strand></strand>
        <context>TTCGGAGAGA[G/A]CCAATGGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATGGGAGGAAATATCAATACCCAGGTAAGAAGTTCTTTTTTCGGAGAGA</left_flank>
        <right_flank>CCAATGGAAGAGTCACCGATATACATCTAATGGGAAATATTAACTAATTG</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGAAGCGCGGTTTCGGAGGCATACTATGAAAGCCTTTATGGTAGAAACTATCAAAAATATTGCTAAAACTAAATATATACAATTTCAAATGAAATGAACCAATAGAAGAAAATTGAAAAAAAAAATTCTCGAAAAAAAAGAAAGTTTTCAAAAAAAAAAAATCATGAAAGCGGTGGTTCAATAACTCTCATAGTCCTAAAACACTAGGGTGAAACATACATTTTTTGAAAATTGAGTCTGATTTGCTTGAGGATTTCGGTACTTGTAAATTCAAAAAATAAGCGGAATCACTAATTGTAAGTTAGTTACGGTTGAATATAAAGCTAAAATTAATCTCAACTTTCACAAAATTTATCTTGCTACCTGTCAAAGAGTTTAAGAAGTGGTCCACTAACAAAATGTGTCATACTATTAGAAACATTTTTATTTTCACGGTGGTGAGCCAGAAAATGGGAGGAAATATCAATACCCAGGTAAGAAGTTCTTTTTTCGGAGAGAGCCAATGGAAGAGTCACCGATATACATCTAATGGGAAATATTAACTAATTGGAACAGGAAGTGTTGTTTCGATCTAGAAAAGAAGTAAAAACAAGTCGTGACCTGGAAAAATCCAAACATCCGGACCCAGATTCTCATGGAACTCATCAAAAAACAAAGAAAAAATTGGATGACGATAACCATCTGAGGCAAAAAAAAGAAGGAGAAAAGGTCTAGAAGAAGAAGCGTCTAGATAATTATGATTATTAATCGGATTTAGATGTGCAAAAGAGAAAAAAGACTTGAAAATAATACAATTAACATTAAGGCGTGTGGGTTTCAAGAGAAAAATAATGTGGGTTTCTCTTCTTCTGGAGCGCAACACAAACCGTCTGATCGACGATGATGATGAGGAAGAAGAGGAAAAGATTTTTGGTTGTTTCTTCGTCTCCTTCTGATGACGTCAAAATCTGACGGGTACGTACGGATCATCGGGAGGTCTTCTTCTACTTCTGGAGACTG</canonical>
            <polymorphic>CGGAAGCGCGGTTTCGGAGGCATACTATGAAAGCCTTTATGGTAGAAACTATCAAAAATATTGCTAAAACTAAATATATACAATTTCAAATGAAATGAACCAATAGAAGAAAATTGAAAAAAAAAATTCTCGAAAAAAAAGAAAGTTTTCAAAAAAAAAAAATCATGAAAGCGGTGGTTCAATAACTCTCATAGTCCTAAAACACTAGGGTGAAACATACATTTTTTGAAAATTGAGTCTGATTTGCTTGAGGATTTCGGTACTTGTAAATTCAAAAAATAAGCGGAATCACTAATTGTAAGTTAGTTACGGTTGAATATAAAGCTAAAATTAATCTCAACTTTCACAAAATTTATCTTGCTACCTGTCAAAGAGTTTAAGAAGTGGTCCACTAACAAAATGTGTCATACTATTAGAAACATTTTTATTTTCACGGTGGTGAGCCAGAAAATGGGAGGAAATATCAATACCCAGGTAAGAAGTTCTTTTTTCGGAGAGARCCAATGGAAGAGTCACCGATATACATCTAATGGGAAATATTAACTAATTGGAACAGGAAGTGTTGTTTCGATCTAGAAAAGAAGTAAAAACAAGTCGTGACCTGGAAAAATCCAAACATCCGGACCCAGATTCTCATGGAACTCATCAAAAAACAAAGAAAAAATTGGATGACGATAACCATCTGAGGCAAAAAAAAGAAGGAGAAAAGGTCTAGAAGAAGAAGCGTCTAGATAATTATGATTATTAATCGGATTTAGATGTGCAAAAGAGAAAAAAGACTTGAAAATAATACAATTAACATTAAGGCGTGTGGGTTTCAAGAGAAAAATAATGTGGGTTTCTCTTCTTCTGGAGCGCAACACAAACCGTCTGATCGACGATGATGATGAGGAAGAAGAGGAAAAGATTTTTGGTTGTTTCTTCGTCTCCTTCTGATGACGTCAAAATCTGACGGGTACGTACGGATCATCGGGAGGTCTTCTTCTACTTCTGGAGACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>500 291 119 57 33</canonical_bands>
                <polymorphic_bands>557 291 119 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACGGTTGAATATAAAGCTAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAACACTTCCTGTTCCAATTA</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>TTACGGTTGAATATAAAGCTAAAATTAATCTCAACTTTCACAAAATTTATCTTGCTACCTGTCAAAGAGTTTAAGAAGTGGTCCACTAACAAAATGTGTCATACTATTAGAAACATTTTTATTTTCACGGTGGTGAGCCAGAAAATGGGAGGAAATATCAATACCCAGGTAAGAAGTTCTTTTTTCGGAGAGAGCCAATGGAAGAGTCACCGATATACATCTAATGGGAAATATTAACTAATTGGAACAGGAAGTGTTG</canonical_amplicon>
		<polymorphic_amplicon>TTACGGTTGAATATAAAGCTAAAATTAATCTCAACTTTCACAAAATTTATCTTGCTACCTGTCAAAGAGTTTAAGAAGTGGTCCACTAACAAAATGTGTCATACTATTAGAAACATTTTTATTTTCACGGTGGTGAGCCAGAAAATGGGAGGAAATATCAATACCCAGGTAAGAAGTTCTTTTTTCGGAGAGARCCAATGGAAGAGTCACCGATATACATCTAATGGGAAATATTAACTAATTGGAACAGGAAGTGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18368</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>38938</contig_pos>
        <strand></strand>
        <context>AAATGGGAGG[A/T]AATATCAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTATTAGAAACATTTTTATTTTCACGGTGGTGAGCCAGAAAATGGGAGG</left_flank>
        <right_flank>AATATCAATACCCAGGTAAGAAGTTCTTTTTTCGGAGAGAGCCAATGGAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATCGAAAATTCAATCGTGTAGCGACGAACAATCAGCGCCGGAAGCGCGGTTTCGGAGGCATACTATGAAAGCCTTTATGGTAGAAACTATCAAAAATATTGCTAAAACTAAATATATACAATTTCAAATGAAATGAACCAATAGAAGAAAATTGAAAAAAAAAATTCTCGAAAAAAAAGAAAGTTTTCAAAAAAAAAAAATCATGAAAGCGGTGGTTCAATAACTCTCATAGTCCTAAAACACTAGGGTGAAACATACATTTTTTGAAAATTGAGTCTGATTTGCTTGAGGATTTCGGTACTTGTAAATTCAAAAAATAAGCGGAATCACTAATTGTAAGTTAGTTACGGTTGAATATAAAGCTAAAATTAATCTCAACTTTCACAAAATTTATCTTGCTACCTGTCAAAGAGTTTAAGAAGTGGTCCACTAACAAAATGTGTCATACTATTAGAAACATTTTTATTTTCACGGTGGTGAGCCAGAAAATGGGAGGAAATATCAATACCCAGGTAAGAAGTTCTTTTTTCGGAGAGAGCCAATGGAAGAGTCACCGATATACATCTAATGGGAAATATTAACTAATTGGAACAGGAAGTGTTGTTTCGATCTAGAAAAGAAGTAAAAACAAGTCGTGACCTGGAAAAATCCAAACATCCGGACCCAGATTCTCATGGAACTCATCAAAAAACAAAGAAAAAATTGGATGACGATAACCATCTGAGGCAAAAAAAAGAAGGAGAAAAGGTCTAGAAGAAGAAGCGTCTAGATAATTATGATTATTAATCGGATTTAGATGTGCAAAAGAGAAAAAAGACTTGAAAATAATACAATTAACATTAAGGCGTGTGGGTTTCAAGAGAAAAATAATGTGGGTTTCTCTTCTTCTGGAGCGCAACACAAACCGTCTGATCGACGATGATGATGAGGAAGAAGAGGAAAAGATTTTTGGTTGTTTCTTCGTCTCCTTCTGATGACGTCAAAATCTGACGGGTAC</canonical>
            <polymorphic>AAAATCGAAAATTCAATCGTGTAGCGACGAACAATCAGCGCCGGAAGCGCGGTTTCGGAGGCATACTATGAAAGCCTTTATGGTAGAAACTATCAAAAATATTGCTAAAACTAAATATATACAATTTCAAATGAAATGAACCAATAGAAGAAAATTGAAAAAAAAAATTCTCGAAAAAAAAGAAAGTTTTCAAAAAAAAAAAATCATGAAAGCGGTGGTTCAATAACTCTCATAGTCCTAAAACACTAGGGTGAAACATACATTTTTTGAAAATTGAGTCTGATTTGCTTGAGGATTTCGGTACTTGTAAATTCAAAAAATAAGCGGAATCACTAATTGTAAGTTAGTTACGGTTGAATATAAAGCTAAAATTAATCTCAACTTTCACAAAATTTATCTTGCTACCTGTCAAAGAGTTTAAGAAGTGGTCCACTAACAAAATGTGTCATACTATTAGAAACATTTTTATTTTCACGGTGGTGAGCCAGAAAATGGGAGGWAATATCAATACCCAGGTAAGAAGTTCTTTTTTCGGAGAGAGCCAATGGAAGAGTCACCGATATACATCTAATGGGAAATATTAACTAATTGGAACAGGAAGTGTTGTTTCGATCTAGAAAAGAAGTAAAAACAAGTCGTGACCTGGAAAAATCCAAACATCCGGACCCAGATTCTCATGGAACTCATCAAAAAACAAAGAAAAAATTGGATGACGATAACCATCTGAGGCAAAAAAAAGAAGGAGAAAAGGTCTAGAAGAAGAAGCGTCTAGATAATTATGATTATTAATCGGATTTAGATGTGCAAAAGAGAAAAAAGACTTGAAAATAATACAATTAACATTAAGGCGTGTGGGTTTCAAGAGAAAAATAATGTGGGTTTCTCTTCTTCTGGAGCGCAACACAAACCGTCTGATCGACGATGATGATGAGGAAGAAGAGGAAAAGATTTTTGGTTGTTTCTTCGTCTCCTTCTGATGACGTCAAAATCTGACGGGTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGCGGAATCACTAATTGTAAG</pcr_primer_p1>
		<pcr_primer_p2>TTAGATGTATATCGGTGACTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAAGCGGAATCACTAATTGTAAGTTAGTTACGGTTGAATATAAAGCTAAAATTAATCTCAACTTTCACAAAATTTATCTTGCTACCTGTCAAAGAGTTTAAGAAGTGGTCCACTAACAAAATGTGTCATACTATTAGAAACATTTTTATTTTCACGGTGGTGAGCCAGAAAATGGGAGGAAATATCAATACCCAGGTAAGAAGTTCTTTTTTCGGAGAGAGCCAATGGAAGAGTCACCGATATACATCTAA</canonical_amplicon>
		<polymorphic_amplicon>TAAGCGGAATCACTAATTGTAAGTTAGTTACGGTTGAATATAAAGCTAAAATTAATCTCAACTTTCACAAAATTTATCTTGCTACCTGTCAAAGAGTTTAAGAAGTGGTCCACTAACAAAATGTGTCATACTATTAGAAACATTTTTATTTTCACGGTGGTGAGCCAGAAAATGGGAGGWAATATCAATACCCAGGTAAGAAGTTCTTTTTTCGGAGAGAGCCAATGGAAGAGTCACCGATATACATCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18370</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>76521</contig_pos>
        <strand></strand>
        <context>ATCGAAATAT[T/G]TGTTATATCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GGTTTAACGTTTTAGAATGAATCGGATCCTAATATAAAAAATCGAAATAT</left_flank>
        <right_flank>TGTTATATCTGGAACAGAAAACCTTTTTCAAACTTTTAGTGAAACACAAA</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATATCATATTTCTAGGCTAAGTTTACTAATGTATTTAACACCAATATGTTGTGCATTTCGACTGTGTTACCACTTCACACTAATGTAAAAAATTGTCTTCGTCTCTAATTTCGATGTTTTGAAACAGAAAAAAAACAATTTTTCAAAGTTTTTCAGGAAAAATTCTGGCCAGGCTCTGCTCTTTTTTCGGTTTTCTACATCTCTGAAAGCTAAGAAAGCGGTGAAACATTTAGCATGCACAGGTGGAAATTCTTAAAGTTCATTAGAATCGGCTGAAGAACATTTCTAGCTTAGTAGCACCACCTATTATAAAATATGATAGAAGTTCTGAAAAGAAAAACGAGATTTTGTGTTTTTAACGATTTCTACTCTAATTTATTTTTCAATTTCTGAGTTTCTTAAATGGCATAAAACATAGAAAAAAAAGGAACTCTGGGATATGATATTTGGTTTAACGTTTTAGAATGAATCGGATCCTAATATAAAAAATCGAAATATTTGTTATATCTGGAACAGAAAACCTTTTTCAAACTTTTAGTGAAACACAAATTCTGCAAAACATTCAAACCCGACTAAAGTAATTTCTCTCCAAAATAAAATAATACTGAAAAATAAAATTGAATGAGATGAAGCGGCTCGTATTCTCTTATTGAGCTTGCCCAAGTGAAACGGGAGCAAAAACGAAGAGAAATGAGAGAGAATTGCCATGGAAACGCGTTGCCTGGCGTCTCTCAATTTTCTATACTCTCTCGCGCGTCTCCTTCTTGATTCACGAATGCTCGAAGCGGTGGAAATTAGTAATGAGCAGGTCGAGATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGTGAAGAGTTTGAAGGTTTCCCTCTGCTCTGTAAGCGTATATGGACATAAAAATTTTTTTAAAGGCGATGAAGTAAAATTTAAATTTAAAAAGAAATTCCTGAACATATCAAAAACATTAATTTCTAATGTATGAAAGAAATG</canonical>
            <polymorphic>AATATCATATTTCTAGGCTAAGTTTACTAATGTATTTAACACCAATATGTTGTGCATTTCGACTGTGTTACCACTTCACACTAATGTAAAAAATTGTCTTCGTCTCTAATTTCGATGTTTTGAAACAGAAAAAAAACAATTTTTCAAAGTTTTTCAGGAAAAATTCTGGCCAGGCTCTGCTCTTTTTTCGGTTTTCTACATCTCTGAAAGCTAAGAAAGCGGTGAAACATTTAGCATGCACAGGTGGAAATTCTTAAAGTTCATTAGAATCGGCTGAAGAACATTTCTAGCTTAGTAGCACCACCTATTATAAAATATGATAGAAGTTCTGAAAAGAAAAACGAGATTTTGTGTTTTTAACGATTTCTACTCTAATTTATTTTTCAATTTCTGAGTTTCTTAAATGGCATAAAACATAGAAAAAAAAGGAACTCTGGGATATGATATTTGGTTTAACGTTTTAGAATGAATCGGATCCTAATATAAAAAATCGAAATATKTGTTATATCTGGAACAGAAAACCTTTTTCAAACTTTTAGTGAAACACAAATTCTGCAAAACATTCAAACCCGACTAAAGTAATTTCTCTCCAAAATAAAATAATACTGAAAAATAAAATTGAATGAGATGAAGCGGCTCGTATTCTCTTATTGAGCTTGCCCAAGTGAAACGGGAGCAAAAACGAAGAGAAATGAGAGAGAATTGCCATGGAAACGCGTTGCCTGGCGTCTCTCAATTTTCTATACTCTCTCGCGCGTCTCCTTCTTGATTCACGAATGCTCGAAGCGGTGGAAATTAGTAATGAGCAGGTCGAGATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGTGAAGAGTTTGAAGGTTTCCCTCTGCTCTGTAAGCGTATATGGACATAAAAATTTTTTTAAAGGCGATGAAGTAAAATTTAAATTTAAAAAGAAATTCCTGAACATATCAAAAACATTAATTTCTAATGTATGAAAGAAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACGAGATTTTGTGTTTTTAAC</pcr_primer_p1>
		<pcr_primer_p2>AGAAATTACTTTAGTCGGGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAACGAGATTTTGTGTTTTTAACGATTTCTACTCTAATTTATTTTTCAATTTCTGAGTTTCTTAAATGGCATAAAACATAGAAAAAAAAGGAACTCTGGGATATGATATTTGGTTTAACGTTTTAGAATGAATCGGATCCTAATATAAAAAATCGAAATATTTGTTATATCTGGAACAGAAAACCTTTTTCAAACTTTTAGTGAAACACAAATTCTGCAAAACATTCAAACCCGACTAAAGTAATTTCT</canonical_amplicon>
		<polymorphic_amplicon>AAACGAGATTTTGTGTTTTTAACGATTTCTACTCTAATTTATTTTTCAATTTCTGAGTTTCTTAAATGGCATAAAACATAGAAAAAAAAGGAACTCTGGGATATGATATTTGGTTTAACGTTTTAGAATGAATCGGATCCTAATATAAAAAATCGAAATATKTGTTATATCTGGAACAGAAAACCTTTTTCAAACTTTTAGTGAAACACAAATTCTGCAAAACATTCAAACCCGACTAAAGTAATTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18371</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>81578</contig_pos>
        <strand></strand>
        <context>cgaaacccta[G/A]agaaaaaatc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGAAAAACTTTTGTTAGTAAAAAAATTGTCGGAAGACGAACGAAACCCTA</left_flank>
        <right_flank>AGAAAAAATCGGGAAAATCGAAATATTTTTAAGGTACAGTTTTGTTTTCC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTTTGACGAGGACATTTTGAATATTTCTCAATTTATGGTCCACTATTAAATAACCGAAATTGTGTCCCTGACCGCACATTTGGTCGGCACCCTCCTTGTTTTTTCTTCTCTTCTCATCAGCGGTGATTCCAGTCTGAAATGAACGAATTGATGGTTTTGGGAGAAAACTGTTTCAAGGATCTTCAAATTTATTGAATTTGACAATGAAACTAATGCTGACATTATTCTCATTACAAACTTGGTATTGCTAGAAGTTTGAATGCGTTTCAGAATAATACTGTTTCGAAACAGAGAATTATGAAACATCCCGTTTTTTGTTCCATGATAAAATTTAAGTGATTATCACAAAAATGTTGATATGAGAAACAAGATTTGGGAAAGGAAAACTTTCGGTTCGTCGGAGGTCCCAGAACGAAAACTACCTTAACCAGAAAATGGTCAAAAAATGAAAAACTTTTGTTAGTAAAAAAATTGTCGGAAGACGAACGAAACCCTAGAGAAAAAATCGGGAAAATCGAAATATTTTTAAGGTACAGTTTTGTTTTCCGATCTTTGGCCACTTCCACCACTGTTTCACCGCTTCGATTTGTTTTGTACAAGTGAAACTTAAAACAAAGAAAGCTGTGGAACGTTCAAAATATTTCGGATTCAAGAAGTTTATATTTTCCTGAACATTTTTTTTAAAGATATTTTCGGAGGAGCATGATTCAACAATACAAAAGTTTAGGCTCTCGCTAGCCGCCGACTAGAAAATATTCCTCTTCTATTAAATTCAACTTCTGCAAGTTTTCATGGTTCGGTTGTTTTTGGTAGTTGTTTGTTGTTTTTTTTTTGGTAGCATCCATCTTCTGCAGGTCCTTTTTATTTTCTTTGTAATAAAGAAAGGACAGTCCAGATTTTCAAACCAAAGGAAGAATAACCGAATCTGCCAATACCATCTGAGCTACACGGTCGAAAGCGCCTAGCGATGGACTGGATGGGGTACGGTATTCACACA</canonical>
            <polymorphic>GTTTTTTGACGAGGACATTTTGAATATTTCTCAATTTATGGTCCACTATTAAATAACCGAAATTGTGTCCCTGACCGCACATTTGGTCGGCACCCTCCTTGTTTTTTCTTCTCTTCTCATCAGCGGTGATTCCAGTCTGAAATGAACGAATTGATGGTTTTGGGAGAAAACTGTTTCAAGGATCTTCAAATTTATTGAATTTGACAATGAAACTAATGCTGACATTATTCTCATTACAAACTTGGTATTGCTAGAAGTTTGAATGCGTTTCAGAATAATACTGTTTCGAAACAGAGAATTATGAAACATCCCGTTTTTTGTTCCATGATAAAATTTAAGTGATTATCACAAAAATGTTGATATGAGAAACAAGATTTGGGAAAGGAAAACTTTCGGTTCGTCGGAGGTCCCAGAACGAAAACTACCTTAACCAGAAAATGGTCAAAAAATGAAAAACTTTTGTTAGTAAAAAAATTGTCGGAAGACGAACGAAACCCTARAGAAAAAATCGGGAAAATCGAAATATTTTTAAGGTACAGTTTTGTTTTCCGATCTTTGGCCACTTCCACCACTGTTTCACCGCTTCGATTTGTTTTGTACAAGTGAAACTTAAAACAAAGAAAGCTGTGGAACGTTCAAAATATTTCGGATTCAAGAAGTTTATATTTTCCTGAACATTTTTTTTAAAGATATTTTCGGAGGAGCATGATTCAACAATACAAAAGTTTAGGCTCTCGCTAGCCGCCGACTAGAAAATATTCCTCTTCTATTAAATTCAACTTCTGCAAGTTTTCATGGTTCGGTTGTTTTTGGTAGTTGTTTGTTGTTTTTTTTTTGGTAGCATCCATCTTCTGCAGGTCCTTTTTATTTTCTTTGTAATAAAGAAAGGACAGTCCAGATTTTCAAACCAAAGGAAGAATAACCGAATCTGCCAATACCATCTGAGCTACACGGTCGAAAGCGCCTAGCGATGGACTGGATGGGGTACGGTATTCACACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>251 246 241 216 35 11</canonical_bands>
                <polymorphic_bands>487 251 216 35 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTTCCATGATAAAATTTAAGTG</pcr_primer_p1>
		<pcr_primer_p2>AGCTTTCTTTGTTTTAAGTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>TTGTTCCATGATAAAATTTAAGTGATTATCACAAAAATGTTGATATGAGAAACAAGATTTGGGAAAGGAAAACTTTCGGTTCGTCGGAGGTCCCAGAACGAAAACTACCTTAACCAGAAAATGGTCAAAAAATGAAAAACTTTTGTTAGTAAAAAAATTGTCGGAAGACGAACGAAACCCTAGAGAAAAAATCGGGAAAATCGAAATATTTTTAAGGTACAGTTTTGTTTTCCGATCTTTGGCCACTTCCACCACTGTTTCACCGCTTCGATTTGTTTTGTACAAGTGAAACTTAAAACAAAGAAAGCT</canonical_amplicon>
		<polymorphic_amplicon>TTGTTCCATGATAAAATTTAAGTGATTATCACAAAAATGTTGATATGAGAAACAAGATTTGGGAAAGGAAAACTTTCGGTTCGTCGGAGGTCCCAGAACGAAAACTACCTTAACCAGAAAATGGTCAAAAAATGAAAAACTTTTGTTAGTAAAAAAATTGTCGGAAGACGAACGAAACCCTARAGAAAAAATCGGGAAAATCGAAATATTTTTAAGGTACAGTTTTGTTTTCCGATCTTTGGCCACTTCCACCACTGTTTCACCGCTTCGATTTGTTTTGTACAAGTGAAACTTAAAACAAAGAAAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18372</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>81472</contig_pos>
        <strand></strand>
        <context>ggaaaacttt[C/T]ggttcgtcgg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATCACAAAAATGTTGATATGAGAAACAAGATTTGGGAAAGGAAAACTTT</left_flank>
        <right_flank>GGTTCGTCGGAGGTCCCAGAACGAAAACTACCTTAACCAGAAAATGGTCA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTATATTAATATTTTTCACAAAAGATGTTATATTTCTTAAACGGCAAAAAATTTCCGAAATTCTTTTTTCCAAAATTTCTAAAAAACAAACCGCCACTGTGATTCGTTTTTTGACGAGGACATTTTGAATATTTCTCAATTTATGGTCCACTATTAAATAACCGAAATTGTGTCCCTGACCGCACATTTGGTCGGCACCCTCCTTGTTTTTTCTTCTCTTCTCATCAGCGGTGATTCCAGTCTGAAATGAACGAATTGATGGTTTTGGGAGAAAACTGTTTCAAGGATCTTCAAATTTATTGAATTTGACAATGAAACTAATGCTGACATTATTCTCATTACAAACTTGGTATTGCTAGAAGTTTGAATGCGTTTCAGAATAATACTGTTTCGAAACAGAGAATTATGAAACATCCCGTTTTTTGTTCCATGATAAAATTTAAGTGATTATCACAAAAATGTTGATATGAGAAACAAGATTTGGGAAAGGAAAACTTTCGGTTCGTCGGAGGTCCCAGAACGAAAACTACCTTAACCAGAAAATGGTCAAAAAATGAAAAACTTTTGTTAGTAAAAAAATTGTCGGAAGACGAACGAAACCCTAGAGAAAAAATCGGGAAAATCGAAATATTTTTAAGGTACAGTTTTGTTTTCCGATCTTTGGCCACTTCCACCACTGTTTCACCGCTTCGATTTGTTTTGTACAAGTGAAACTTAAAACAAAGAAAGCTGTGGAACGTTCAAAATATTTCGGATTCAAGAAGTTTATATTTTCCTGAACATTTTTTTTAAAGATATTTTCGGAGGAGCATGATTCAACAATACAAAAGTTTAGGCTCTCGCTAGCCGCCGACTAGAAAATATTCCTCTTCTATTAAATTCAACTTCTGCAAGTTTTCATGGTTCGGTTGTTTTTGGTAGTTGTTTGTTGTTTTTTTTTTGGTAGCATCCATCTTCTGCAGGTCCTTTTTATTTTCTTTGTAATAAAGAAAGGACAGT</canonical>
            <polymorphic>CGTATATTAATATTTTTCACAAAAGATGTTATATTTCTTAAACGGCAAAAAATTTCCGAAATTCTTTTTTCCAAAATTTCTAAAAAACAAACCGCCACTGTGATTCGTTTTTTGACGAGGACATTTTGAATATTTCTCAATTTATGGTCCACTATTAAATAACCGAAATTGTGTCCCTGACCGCACATTTGGTCGGCACCCTCCTTGTTTTTTCTTCTCTTCTCATCAGCGGTGATTCCAGTCTGAAATGAACGAATTGATGGTTTTGGGAGAAAACTGTTTCAAGGATCTTCAAATTTATTGAATTTGACAATGAAACTAATGCTGACATTATTCTCATTACAAACTTGGTATTGCTAGAAGTTTGAATGCGTTTCAGAATAATACTGTTTCGAAACAGAGAATTATGAAACATCCCGTTTTTTGTTCCATGATAAAATTTAAGTGATTATCACAAAAATGTTGATATGAGAAACAAGATTTGGGAAAGGAAAACTTTYGGTTCGTCGGAGGTCCCAGAACGAAAACTACCTTAACCAGAAAATGGTCAAAAAATGAAAAACTTTTGTTAGTAAAAAAATTGTCGGAAGACGAACGAAACCCTAGAGAAAAAATCGGGAAAATCGAAATATTTTTAAGGTACAGTTTTGTTTTCCGATCTTTGGCCACTTCCACCACTGTTTCACCGCTTCGATTTGTTTTGTACAAGTGAAACTTAAAACAAAGAAAGCTGTGGAACGTTCAAAATATTTCGGATTCAAGAAGTTTATATTTTCCTGAACATTTTTTTTAAAGATATTTTCGGAGGAGCATGATTCAACAATACAAAAGTTTAGGCTCTCGCTAGCCGCCGACTAGAAAATATTCCTCTTCTATTAAATTCAACTTCTGCAAGTTTTCATGGTTCGGTTGTTTTTGGTAGTTGTTTGTTGTTTTTTTTTTGGTAGCATCCATCTTCTGCAGGTCCTTTTTATTTTCTTTGTAATAAAGAAAGGACAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>495 367 138</canonical_bands>
                <polymorphic_bands>862 138</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTTCCATGATAAAATTTAAGTG</pcr_primer_p1>
		<pcr_primer_p2>AGCTTTCTTTGTTTTAAGTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>TTGTTCCATGATAAAATTTAAGTGATTATCACAAAAATGTTGATATGAGAAACAAGATTTGGGAAAGGAAAACTTTCGGTTCGTCGGAGGTCCCAGAACGAAAACTACCTTAACCAGAAAATGGTCAAAAAATGAAAAACTTTTGTTAGTAAAAAAATTGTCGGAAGACGAACGAAACCCTAGAGAAAAAATCGGGAAAATCGAAATATTTTTAAGGTACAGTTTTGTTTTCCGATCTTTGGCCACTTCCACCACTGTTTCACCGCTTCGATTTGTTTTGTACAAGTGAAACTTAAAACAAAGAAAGCT</canonical_amplicon>
		<polymorphic_amplicon>TTGTTCCATGATAAAATTTAAGTGATTATCACAAAAATGTTGATATGAGAAACAAGATTTGGGAAAGGAAAACTTTYGGTTCGTCGGAGGTCCCAGAACGAAAACTACCTTAACCAGAAAATGGTCAAAAAATGAAAAACTTTTGTTAGTAAAAAAATTGTCGGAAGACGAACGAAACCCTAGAGAAAAAATCGGGAAAATCGAAATATTTTTAAGGTACAGTTTTGTTTTCCGATCTTTGGCCACTTCCACCACTGTTTCACCGCTTCGATTTGTTTTGTACAAGTGAAACTTAAAACAAAGAAAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18373</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>81335</contig_pos>
        <strand>+</strand>
        <context>ATTGCTAGAA[A/G]TTTGAATGCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGAAACTAATGCTGACATTATTCTCATTACAAACTTGGTATTGCTAGAA</left_flank>
        <right_flank>TTTGAATGCGTTTCAGAATAATACTGTTTCGAAACAGAGAATTATGAAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGTTTTGGATGGACATATTTGCATGGGAACTTTGAAGATTGTTGCCAATTGGCCAGTGCATTTTTAACGTCGGTTAGCATTTTCAGGTTGTTCTGATAAAATGAATTTTAGCAAATCTGATTAAATTCTGGGAATCGTATATTAATATTTTTCACAAAAGATGTTATATTTCTTAAACGGCAAAAAATTTCCGAAATTCTTTTTTCCAAAATTTCTAAAAAACAAACCGCCACTGTGATTCGTTTTTTGACGAGGACATTTTGAATATTTCTCAATTTATGGTCCACTATTAAATAACCGAAATTGTGTCCCTGACCGCACATTTGGTCGGCACCCTCCTTGTTTTTTCTTCTCTTCTCATCAGCGGTGATTCCAGTCTGAAATGAACGAATTGATGGTTTTGGGAGAAAACTGTTTCAAGGATCTTCAAATTTATTGAATTTGACAATGAAACTAATGCTGACATTATTCTCATTACAAACTTGGTATTGCTAGAAGTTTGAATGCGTTTCAGAATAATACTGTTTCGAAACAGAGAATTATGAAACATCCCGTTTTTTGTTCCATGATAAAATTTAAGTGATTATCACAAAAATGTTGATATGAGAAACAAGATTTGGGAAAGGAAAACTTTCGGTTCGTCGGAGGTCCCAGAACGAAAACTACCTTAACCAGAAAATGGTCAAAAAATGAAAAACTTTTGTTAGTAAAAAAATTGTCGGAAGACGAACGAAACCCTAGAGAAAAAATCGGGAAAATCGAAATATTTTTAAGGTACAGTTTTGTTTTCCGATCTTTGGCCACTTCCACCACTGTTTCACCGCTTCGATTTGTTTTGTACAAGTGAAACTTAAAACAAAGAAAGCTGTGGAACGTTCAAAATATTTCGGATTCAAGAAGTTTATATTTTCCTGAACATTTTTTTTAAAGATATTTTCGGAGGAGCATGATTCAACAATACAAAAGTTTAGGCTCTCGCTAGCCGCCGACTAGAAAAT</canonical>
            <polymorphic>CATGTTTTGGATGGACATATTTGCATGGGAACTTTGAAGATTGTTGCCAATTGGCCAGTGCATTTTTAACGTCGGTTAGCATTTTCAGGTTGTTCTGATAAAATGAATTTTAGCAAATCTGATTAAATTCTGGGAATCGTATATTAATATTTTTCACAAAAGATGTTATATTTCTTAAACGGCAAAAAATTTCCGAAATTCTTTTTTCCAAAATTTCTAAAAAACAAACCGCCACTGTGATTCGTTTTTTGACGAGGACATTTTGAATATTTCTCAATTTATGGTCCACTATTAAATAACCGAAATTGTGTCCCTGACCGCACATTTGGTCGGCACCCTCCTTGTTTTTTCTTCTCTTCTCATCAGCGGTGATTCCAGTCTGAAATGAACGAATTGATGGTTTTGGGAGAAAACTGTTTCAAGGATCTTCAAATTTATTGAATTTGACAATGAAACTAATGCTGACATTATTCTCATTACAAACTTGGTATTGCTAGAARTTTGAATGCGTTTCAGAATAATACTGTTTCGAAACAGAGAATTATGAAACATCCCGTTTTTTGTTCCATGATAAAATTTAAGTGATTATCACAAAAATGTTGATATGAGAAACAAGATTTGGGAAAGGAAAACTTTCGGTTCGTCGGAGGTCCCAGAACGAAAACTACCTTAACCAGAAAATGGTCAAAAAATGAAAAACTTTTGTTAGTAAAAAAATTGTCGGAAGACGAACGAAACCCTAGAGAAAAAATCGGGAAAATCGAAATATTTTTAAGGTACAGTTTTGTTTTCCGATCTTTGGCCACTTCCACCACTGTTTCACCGCTTCGATTTGTTTTGTACAAGTGAAACTTAAAACAAAGAAAGCTGTGGAACGTTCAAAATATTTCGGATTCAAGAAGTTTATATTTTCCTGAACATTTTTTTTAAAGATATTTTCGGAGGAGCATGATTCAACAATACAAAAGTTTAGGCTCTCGCTAGCCGCCGACTAGAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCTGAAATGAACGAATTGAT</pcr_primer_p1>
		<pcr_primer_p2>TCACTTAAATTTTATCATGGAACA</pcr_primer_p2>
		<pcr_amplicon_size>209</pcr_amplicon_size>
		<canonical_amplicon>AGTCTGAAATGAACGAATTGATGGTTTTGGGAGAAAACTGTTTCAAGGATCTTCAAATTTATTGAATTTGACAATGAAACTAATGCTGACATTATTCTCATTACAAACTTGGTATTGCTAGAAGTTTGAATGCGTTTCAGAATAATACTGTTTCGAAACAGAGAATTATGAAACATCCCGTTTTTTGTTCCATGATAAAATTTAAGTGA</canonical_amplicon>
		<polymorphic_amplicon>AGTCTGAAATGAACGAATTGATGGTTTTGGGAGAAAACTGTTTCAAGGATCTTCAAATTTATTGAATTTGACAATGAAACTAATGCTGACATTATTCTCATTACAAACTTGGTATTGCTAGAARTTTGAATGCGTTTCAGAATAATACTGTTTCGAAACAGAGAATTATGAAACATCCCGTTTTTTGTTCCATGATAAAATTTAAGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18374</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>81310</contig_pos>
        <strand>+</strand>
        <context>ACATTATTCT[C/G]ATTACAAACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATCTTCAAATTTATTGAATTTGACAATGAAACTAATGCTGACATTATTCT</left_flank>
        <right_flank>ATTACAAACTTGGTATTGCTAGAAGTTTGAATGCGTTTCAGAATAATACT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTATTAAAACATTATCAATTATCCATGTTTTGGATGGACATATTTGCATGGGAACTTTGAAGATTGTTGCCAATTGGCCAGTGCATTTTTAACGTCGGTTAGCATTTTCAGGTTGTTCTGATAAAATGAATTTTAGCAAATCTGATTAAATTCTGGGAATCGTATATTAATATTTTTCACAAAAGATGTTATATTTCTTAAACGGCAAAAAATTTCCGAAATTCTTTTTTCCAAAATTTCTAAAAAACAAACCGCCACTGTGATTCGTTTTTTGACGAGGACATTTTGAATATTTCTCAATTTATGGTCCACTATTAAATAACCGAAATTGTGTCCCTGACCGCACATTTGGTCGGCACCCTCCTTGTTTTTTCTTCTCTTCTCATCAGCGGTGATTCCAGTCTGAAATGAACGAATTGATGGTTTTGGGAGAAAACTGTTTCAAGGATCTTCAAATTTATTGAATTTGACAATGAAACTAATGCTGACATTATTCTCATTACAAACTTGGTATTGCTAGAAGTTTGAATGCGTTTCAGAATAATACTGTTTCGAAACAGAGAATTATGAAACATCCCGTTTTTTGTTCCATGATAAAATTTAAGTGATTATCACAAAAATGTTGATATGAGAAACAAGATTTGGGAAAGGAAAACTTTCGGTTCGTCGGAGGTCCCAGAACGAAAACTACCTTAACCAGAAAATGGTCAAAAAATGAAAAACTTTTGTTAGTAAAAAAATTGTCGGAAGACGAACGAAACCCTAGAGAAAAAATCGGGAAAATCGAAATATTTTTAAGGTACAGTTTTGTTTTCCGATCTTTGGCCACTTCCACCACTGTTTCACCGCTTCGATTTGTTTTGTACAAGTGAAACTTAAAACAAAGAAAGCTGTGGAACGTTCAAAATATTTCGGATTCAAGAAGTTTATATTTTCCTGAACATTTTTTTTAAAGATATTTTCGGAGGAGCATGATTCAACAATACAAAAGTTTAGGC</canonical>
            <polymorphic>AATTATTAAAACATTATCAATTATCCATGTTTTGGATGGACATATTTGCATGGGAACTTTGAAGATTGTTGCCAATTGGCCAGTGCATTTTTAACGTCGGTTAGCATTTTCAGGTTGTTCTGATAAAATGAATTTTAGCAAATCTGATTAAATTCTGGGAATCGTATATTAATATTTTTCACAAAAGATGTTATATTTCTTAAACGGCAAAAAATTTCCGAAATTCTTTTTTCCAAAATTTCTAAAAAACAAACCGCCACTGTGATTCGTTTTTTGACGAGGACATTTTGAATATTTCTCAATTTATGGTCCACTATTAAATAACCGAAATTGTGTCCCTGACCGCACATTTGGTCGGCACCCTCCTTGTTTTTTCTTCTCTTCTCATCAGCGGTGATTCCAGTCTGAAATGAACGAATTGATGGTTTTGGGAGAAAACTGTTTCAAGGATCTTCAAATTTATTGAATTTGACAATGAAACTAATGCTGACATTATTCTSATTACAAACTTGGTATTGCTAGAAGTTTGAATGCGTTTCAGAATAATACTGTTTCGAAACAGAGAATTATGAAACATCCCGTTTTTTGTTCCATGATAAAATTTAAGTGATTATCACAAAAATGTTGATATGAGAAACAAGATTTGGGAAAGGAAAACTTTCGGTTCGTCGGAGGTCCCAGAACGAAAACTACCTTAACCAGAAAATGGTCAAAAAATGAAAAACTTTTGTTAGTAAAAAAATTGTCGGAAGACGAACGAAACCCTAGAGAAAAAATCGGGAAAATCGAAATATTTTTAAGGTACAGTTTTGTTTTCCGATCTTTGGCCACTTCCACCACTGTTTCACCGCTTCGATTTGTTTTGTACAAGTGAAACTTAAAACAAAGAAAGCTGTGGAACGTTCAAAATATTTCGGATTCAAGAAGTTTATATTTTCCTGAACATTTTTTTTAAAGATATTTTCGGAGGAGCATGATTCAACAATACAAAAGTTTAGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTCTCAATTTATGGTCCACT</pcr_primer_p1>
		<pcr_primer_p2>TTCGAAACAGTATTATTCTGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>266</pcr_amplicon_size>
		<canonical_amplicon>TATTTCTCAATTTATGGTCCACTATTAAATAACCGAAATTGTGTCCCTGACCGCACATTTGGTCGGCACCCTCCTTGTTTTTTCTTCTCTTCTCATCAGCGGTGATTCCAGTCTGAAATGAACGAATTGATGGTTTTGGGAGAAAACTGTTTCAAGGATCTTCAAATTTATTGAATTTGACAATGAAACTAATGCTGACATTATTCTCATTACAAACTTGGTATTGCTAGAAGTTTGAATGCGTTTCAGAATAATACTGTTTCGAA</canonical_amplicon>
		<polymorphic_amplicon>TATTTCTCAATTTATGGTCCACTATTAAATAACCGAAATTGTGTCCCTGACCGCACATTTGGTCGGCACCCTCCTTGTTTTTTCTTCTCTTCTCATCAGCGGTGATTCCAGTCTGAAATGAACGAATTGATGGTTTTGGGAGAAAACTGTTTCAAGGATCTTCAAATTTATTGAATTTGACAATGAAACTAATGCTGACATTATTCTSATTACAAACTTGGTATTGCTAGAAGTTTGAATGCGTTTCAGAATAATACTGTTTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18375</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>81141</contig_pos>
        <strand>+</strand>
        <context>ATAACCGAAA[C/T]TGTGTCCCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGACATTTTGAATATTTCTCAATTTATGGTCCACTATTAAATAACCGAAA</left_flank>
        <right_flank>TGTGTCCCTGACCGCACATTTGGTCGGCACCCTCCTTGTTTTTTCTTCTC</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCGACATTTTCAAAATTTTTTCCAATTATTTAATTTTCCAGAATGTTCTGGATTGTTTTCCTGTTTTTATTGTTCCTTATGTTACAGTTTCCATTTTATTCAATTTAGTTAACAATATTTGATGGCTGGCACTTAACATTTCAAATATTATAGTAGAAAATAAAAGCAATTATTAAAACATTATCAATTATCCATGTTTTGGATGGACATATTTGCATGGGAACTTTGAAGATTGTTGCCAATTGGCCAGTGCATTTTTAACGTCGGTTAGCATTTTCAGGTTGTTCTGATAAAATGAATTTTAGCAAATCTGATTAAATTCTGGGAATCGTATATTAATATTTTTCACAAAAGATGTTATATTTCTTAAACGGCAAAAAATTTCCGAAATTCTTTTTTCCAAAATTTCTAAAAAACAAACCGCCACTGTGATTCGTTTTTTGACGAGGACATTTTGAATATTTCTCAATTTATGGTCCACTATTAAATAACCGAAATTGTGTCCCTGACCGCACATTTGGTCGGCACCCTCCTTGTTTTTTCTTCTCTTCTCATCAGCGGTGATTCCAGTCTGAAATGAACGAATTGATGGTTTTGGGAGAAAACTGTTTCAAGGATCTTCAAATTTATTGAATTTGACAATGAAACTAATGCTGACATTATTCTCATTACAAACTTGGTATTGCTAGAAGTTTGAATGCGTTTCAGAATAATACTGTTTCGAAACAGAGAATTATGAAACATCCCGTTTTTTGTTCCATGATAAAATTTAAGTGATTATCACAAAAATGTTGATATGAGAAACAAGATTTGGGAAAGGAAAACTTTCGGTTCGTCGGAGGTCCCAGAACGAAAACTACCTTAACCAGAAAATGGTCAAAAAATGAAAAACTTTTGTTAGTAAAAAAATTGTCGGAAGACGAACGAAACCCTAGAGAAAAAATCGGGAAAATCGAAATATTTTTAAGGTACAGTTTTGTTTTCCGATCTTTGGCCAC</canonical>
            <polymorphic>CTCCGACATTTTCAAAATTTTTTCCAATTATTTAATTTTCCAGAATGTTCTGGATTGTTTTCCTGTTTTTATTGTTCCTTATGTTACAGTTTCCATTTTATTCAATTTAGTTAACAATATTTGATGGCTGGCACTTAACATTTCAAATATTATAGTAGAAAATAAAAGCAATTATTAAAACATTATCAATTATCCATGTTTTGGATGGACATATTTGCATGGGAACTTTGAAGATTGTTGCCAATTGGCCAGTGCATTTTTAACGTCGGTTAGCATTTTCAGGTTGTTCTGATAAAATGAATTTTAGCAAATCTGATTAAATTCTGGGAATCGTATATTAATATTTTTCACAAAAGATGTTATATTTCTTAAACGGCAAAAAATTTCCGAAATTCTTTTTTCCAAAATTTCTAAAAAACAAACCGCCACTGTGATTCGTTTTTTGACGAGGACATTTTGAATATTTCTCAATTTATGGTCCACTATTAAATAACCGAAAYTGTGTCCCTGACCGCACATTTGGTCGGCACCCTCCTTGTTTTTTCTTCTCTTCTCATCAGCGGTGATTCCAGTCTGAAATGAACGAATTGATGGTTTTGGGAGAAAACTGTTTCAAGGATCTTCAAATTTATTGAATTTGACAATGAAACTAATGCTGACATTATTCTCATTACAAACTTGGTATTGCTAGAAGTTTGAATGCGTTTCAGAATAATACTGTTTCGAAACAGAGAATTATGAAACATCCCGTTTTTTGTTCCATGATAAAATTTAAGTGATTATCACAAAAATGTTGATATGAGAAACAAGATTTGGGAAAGGAAAACTTTCGGTTCGTCGGAGGTCCCAGAACGAAAACTACCTTAACCAGAAAATGGTCAAAAAATGAAAAACTTTTGTTAGTAAAAAAATTGTCGGAAGACGAACGAAACCCTAGAGAAAAAATCGGGAAAATCGAAATATTTTTAAGGTACAGTTTTGTTTTCCGATCTTTGGCCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>141 99 91 88 70 66 64 62 57 55 40 35 28 20 18 15 15 10 9 9 8</canonical_bands>
                <polymorphic_bands>141 116 99 91 70 66 64 62 57 55 40 35 20 18 15 15 10 9 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCTGATTAAATTCTGGGAATC</pcr_primer_p1>
		<pcr_primer_p2>GCTGATGAGAAGAGAAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AATCTGATTAAATTCTGGGAATCGTATATTAATATTTTTCACAAAAGATGTTATATTTCTTAAACGGCAAAAAATTTCCGAAATTCTTTTTTCCAAAATTTCTAAAAAACAAACCGCCACTGTGATTCGTTTTTTGACGAGGACATTTTGAATATTTCTCAATTTATGGTCCACTATTAAATAACCGAAATTGTGTCCCTGACCGCACATTTGGTCGGCACCCTCCTTGTTTTTTCTTCTCTTCTCATCAGC</canonical_amplicon>
		<polymorphic_amplicon>AATCTGATTAAATTCTGGGAATCGTATATTAATATTTTTCACAAAAGATGTTATATTTCTTAAACGGCAAAAAATTTCCGAAATTCTTTTTTCCAAAATTTCTAAAAAACAAACCGCCACTGTGATTCGTTTTTTGACGAGGACATTTTGAATATTTCTCAATTTATGGTCCACTATTAAATAACCGAAAYTGTGTCCCTGACCGCACATTTGGTCGGCACCCTCCTTGTTTTTTCTTCTCTTCTCATCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18376</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>81127</contig_pos>
        <strand>+</strand>
        <context>TGGTCCACTA[G/T]TAAATAACCG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGTTTTTTGACGAGGACATTTTGAATATTTCTCAATTTATGGTCCACTA</left_flank>
        <right_flank>TAAATAACCGAAATTGTGTCCCTGACCGCACATTTGGTCGGCACCCTCCT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAGTATTCGATTCTCCGACATTTTCAAAATTTTTTCCAATTATTTAATTTTCCAGAATGTTCTGGATTGTTTTCCTGTTTTTATTGTTCCTTATGTTACAGTTTCCATTTTATTCAATTTAGTTAACAATATTTGATGGCTGGCACTTAACATTTCAAATATTATAGTAGAAAATAAAAGCAATTATTAAAACATTATCAATTATCCATGTTTTGGATGGACATATTTGCATGGGAACTTTGAAGATTGTTGCCAATTGGCCAGTGCATTTTTAACGTCGGTTAGCATTTTCAGGTTGTTCTGATAAAATGAATTTTAGCAAATCTGATTAAATTCTGGGAATCGTATATTAATATTTTTCACAAAAGATGTTATATTTCTTAAACGGCAAAAAATTTCCGAAATTCTTTTTTCCAAAATTTCTAAAAAACAAACCGCCACTGTGATTCGTTTTTTGACGAGGACATTTTGAATATTTCTCAATTTATGGTCCACTATTAAATAACCGAAATTGTGTCCCTGACCGCACATTTGGTCGGCACCCTCCTTGTTTTTTCTTCTCTTCTCATCAGCGGTGATTCCAGTCTGAAATGAACGAATTGATGGTTTTGGGAGAAAACTGTTTCAAGGATCTTCAAATTTATTGAATTTGACAATGAAACTAATGCTGACATTATTCTCATTACAAACTTGGTATTGCTAGAAGTTTGAATGCGTTTCAGAATAATACTGTTTCGAAACAGAGAATTATGAAACATCCCGTTTTTTGTTCCATGATAAAATTTAAGTGATTATCACAAAAATGTTGATATGAGAAACAAGATTTGGGAAAGGAAAACTTTCGGTTCGTCGGAGGTCCCAGAACGAAAACTACCTTAACCAGAAAATGGTCAAAAAATGAAAAACTTTTGTTAGTAAAAAAATTGTCGGAAGACGAACGAAACCCTAGAGAAAAAATCGGGAAAATCGAAATATTTTTAAGGTACAGTTTTGTTTTC</canonical>
            <polymorphic>GAAAGTATTCGATTCTCCGACATTTTCAAAATTTTTTCCAATTATTTAATTTTCCAGAATGTTCTGGATTGTTTTCCTGTTTTTATTGTTCCTTATGTTACAGTTTCCATTTTATTCAATTTAGTTAACAATATTTGATGGCTGGCACTTAACATTTCAAATATTATAGTAGAAAATAAAAGCAATTATTAAAACATTATCAATTATCCATGTTTTGGATGGACATATTTGCATGGGAACTTTGAAGATTGTTGCCAATTGGCCAGTGCATTTTTAACGTCGGTTAGCATTTTCAGGTTGTTCTGATAAAATGAATTTTAGCAAATCTGATTAAATTCTGGGAATCGTATATTAATATTTTTCACAAAAGATGTTATATTTCTTAAACGGCAAAAAATTTCCGAAATTCTTTTTTCCAAAATTTCTAAAAAACAAACCGCCACTGTGATTCGTTTTTTGACGAGGACATTTTGAATATTTCTCAATTTATGGTCCACTAKTAAATAACCGAAATTGTGTCCCTGACCGCACATTTGGTCGGCACCCTCCTTGTTTTTTCTTCTCTTCTCATCAGCGGTGATTCCAGTCTGAAATGAACGAATTGATGGTTTTGGGAGAAAACTGTTTCAAGGATCTTCAAATTTATTGAATTTGACAATGAAACTAATGCTGACATTATTCTCATTACAAACTTGGTATTGCTAGAAGTTTGAATGCGTTTCAGAATAATACTGTTTCGAAACAGAGAATTATGAAACATCCCGTTTTTTGTTCCATGATAAAATTTAAGTGATTATCACAAAAATGTTGATATGAGAAACAAGATTTGGGAAAGGAAAACTTTCGGTTCGTCGGAGGTCCCAGAACGAAAACTACCTTAACCAGAAAATGGTCAAAAAATGAAAAACTTTTGTTAGTAAAAAAATTGTCGGAAGACGAACGAAACCCTAGAGAAAAAATCGGGAAAATCGAAATATTTTTAAGGTACAGTTTTGTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>286 117 102 92 85 79 57 46 40 31 24 21 20</canonical_bands>
                <polymorphic_bands>403 102 92 85 79 57 46 40 31 24 21 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCTGATTAAATTCTGGGAATC</pcr_primer_p1>
		<pcr_primer_p2>GCTGATGAGAAGAGAAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AATCTGATTAAATTCTGGGAATCGTATATTAATATTTTTCACAAAAGATGTTATATTTCTTAAACGGCAAAAAATTTCCGAAATTCTTTTTTCCAAAATTTCTAAAAAACAAACCGCCACTGTGATTCGTTTTTTGACGAGGACATTTTGAATATTTCTCAATTTATGGTCCACTATTAAATAACCGAAATTGTGTCCCTGACCGCACATTTGGTCGGCACCCTCCTTGTTTTTTCTTCTCTTCTCATCAGC</canonical_amplicon>
		<polymorphic_amplicon>AATCTGATTAAATTCTGGGAATCGTATATTAATATTTTTCACAAAAGATGTTATATTTCTTAAACGGCAAAAAATTTCCGAAATTCTTTTTTCCAAAATTTCTAAAAAACAAACCGCCACTGTGATTCGTTTTTTGACGAGGACATTTTGAATATTTCTCAATTTATGGTCCACTAKTAAATAACCGAAATTGTGTCCCTGACCGCACATTTGGTCGGCACCCTCCTTGTTTTTTCTTCTCTTCTCATCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18377</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>81097</contig_pos>
        <strand>+</strand>
        <context>ACGAGGACAT[G/T]TTGAATATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTTCTAAAAAACAAACCGCCACTGTGATTCGTTTTTTGACGAGGACAT</left_flank>
        <right_flank>TTGAATATTTCTCAATTTATGGTCCACTATTAAATAACCGAAATTGTGTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGAATTTTAGGGTTTCTCCTATATTTTGGAAAGTATTCGATTCTCCGACATTTTCAAAATTTTTTCCAATTATTTAATTTTCCAGAATGTTCTGGATTGTTTTCCTGTTTTTATTGTTCCTTATGTTACAGTTTCCATTTTATTCAATTTAGTTAACAATATTTGATGGCTGGCACTTAACATTTCAAATATTATAGTAGAAAATAAAAGCAATTATTAAAACATTATCAATTATCCATGTTTTGGATGGACATATTTGCATGGGAACTTTGAAGATTGTTGCCAATTGGCCAGTGCATTTTTAACGTCGGTTAGCATTTTCAGGTTGTTCTGATAAAATGAATTTTAGCAAATCTGATTAAATTCTGGGAATCGTATATTAATATTTTTCACAAAAGATGTTATATTTCTTAAACGGCAAAAAATTTCCGAAATTCTTTTTTCCAAAATTTCTAAAAAACAAACCGCCACTGTGATTCGTTTTTTGACGAGGACATTTTGAATATTTCTCAATTTATGGTCCACTATTAAATAACCGAAATTGTGTCCCTGACCGCACATTTGGTCGGCACCCTCCTTGTTTTTTCTTCTCTTCTCATCAGCGGTGATTCCAGTCTGAAATGAACGAATTGATGGTTTTGGGAGAAAACTGTTTCAAGGATCTTCAAATTTATTGAATTTGACAATGAAACTAATGCTGACATTATTCTCATTACAAACTTGGTATTGCTAGAAGTTTGAATGCGTTTCAGAATAATACTGTTTCGAAACAGAGAATTATGAAACATCCCGTTTTTTGTTCCATGATAAAATTTAAGTGATTATCACAAAAATGTTGATATGAGAAACAAGATTTGGGAAAGGAAAACTTTCGGTTCGTCGGAGGTCCCAGAACGAAAACTACCTTAACCAGAAAATGGTCAAAAAATGAAAAACTTTTGTTAGTAAAAAAATTGTCGGAAGACGAACGAAACCCTAGAGAAAAAATCGGGAAAATC</canonical>
            <polymorphic>CTTGAATTTTAGGGTTTCTCCTATATTTTGGAAAGTATTCGATTCTCCGACATTTTCAAAATTTTTTCCAATTATTTAATTTTCCAGAATGTTCTGGATTGTTTTCCTGTTTTTATTGTTCCTTATGTTACAGTTTCCATTTTATTCAATTTAGTTAACAATATTTGATGGCTGGCACTTAACATTTCAAATATTATAGTAGAAAATAAAAGCAATTATTAAAACATTATCAATTATCCATGTTTTGGATGGACATATTTGCATGGGAACTTTGAAGATTGTTGCCAATTGGCCAGTGCATTTTTAACGTCGGTTAGCATTTTCAGGTTGTTCTGATAAAATGAATTTTAGCAAATCTGATTAAATTCTGGGAATCGTATATTAATATTTTTCACAAAAGATGTTATATTTCTTAAACGGCAAAAAATTTCCGAAATTCTTTTTTCCAAAATTTCTAAAAAACAAACCGCCACTGTGATTCGTTTTTTGACGAGGACATKTTGAATATTTCTCAATTTATGGTCCACTATTAAATAACCGAAATTGTGTCCCTGACCGCACATTTGGTCGGCACCCTCCTTGTTTTTTCTTCTCTTCTCATCAGCGGTGATTCCAGTCTGAAATGAACGAATTGATGGTTTTGGGAGAAAACTGTTTCAAGGATCTTCAAATTTATTGAATTTGACAATGAAACTAATGCTGACATTATTCTCATTACAAACTTGGTATTGCTAGAAGTTTGAATGCGTTTCAGAATAATACTGTTTCGAAACAGAGAATTATGAAACATCCCGTTTTTTGTTCCATGATAAAATTTAAGTGATTATCACAAAAATGTTGATATGAGAAACAAGATTTGGGAAAGGAAAACTTTCGGTTCGTCGGAGGTCCCAGAACGAAAACTACCTTAACCAGAAAATGGTCAAAAAATGAAAAACTTTTGTTAGTAAAAAAATTGTCGGAAGACGAACGAAACCCTAGAGAAAAAATCGGGAAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCTGATTAAATTCTGGGAATC</pcr_primer_p1>
		<pcr_primer_p2>GCTGATGAGAAGAGAAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AATCTGATTAAATTCTGGGAATCGTATATTAATATTTTTCACAAAAGATGTTATATTTCTTAAACGGCAAAAAATTTCCGAAATTCTTTTTTCCAAAATTTCTAAAAAACAAACCGCCACTGTGATTCGTTTTTTGACGAGGACATTTTGAATATTTCTCAATTTATGGTCCACTATTAAATAACCGAAATTGTGTCCCTGACCGCACATTTGGTCGGCACCCTCCTTGTTTTTTCTTCTCTTCTCATCAGC</canonical_amplicon>
		<polymorphic_amplicon>AATCTGATTAAATTCTGGGAATCGTATATTAATATTTTTCACAAAAGATGTTATATTTCTTAAACGGCAAAAAATTTCCGAAATTCTTTTTTCCAAAATTTCTAAAAAACAAACCGCCACTGTGATTCGTTTTTTGACGAGGACATKTTGAATATTTCTCAATTTATGGTCCACTATTAAATAACCGAAATTGTGTCCCTGACCGCACATTTGGTCGGCACCCTCCTTGTTTTTTCTTCTCTTCTCATCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18383</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>116086</contig_pos>
        <strand>+</strand>
        <context>CAGTGTAACA[C/T]AAATGAAACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCAAATCAAAATCAAATTATAGAAAATTTCGCAACATTCAGTGTAACA</left_flank>
        <right_flank>AAATGAAACAGATAAAAAAAACTCACAGCCAGTAATGAGTTCTACCACTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTGTGCATGACAGAAGATGTTGGATATCATGTGCACGATTCCACAGATTCCAAAAACGTAGAAGAAGATGACGTGGACTTCTGGAAAAAGAATATTTATGTAGTGTGGCTGTATTGATTCACGGAACTTACGAATATTCTCTCGCTCTCCAATAATTGATAATCCTGATAAGAAAATGAGTTCCATCAATCCCACAACAAAGTACAGATATCTGCTGAGCTCATACAGCCAAACGCGTTTGTAGTTCACATTTCGCATTCGTTTGTATCGCGAAACTGGAAACGGGGTTAAGTTCGAAGAAAAAACTATTAGGGTGTGACCAAATTGAACTAATTTTTAAAATATTTTCAATACGCAATATCATAAACTTATGAAACAGAAAATAAAGGGATAAGTGTAGAGTTATACTTATGACGGTAAACGAATAGTTCTCCTGAAGTAAATTTACATTCAAATCAAAATCAAATTATAGAAAATTTCGCAACATTCAGTGTAACACAAATGAAACAGATAAAAAAAACTCACAGCCAGTAATGAGTTCTACCACTCGAATAGGTACATGGAAGAGGAGAAACAGTTGCCAGAATGTTCTTTCGACTGGAAGATTGATGATTCTGGAGAGGGATGGAAGGCGGGCGCGCTGAAACAAGAAACGTAATCACCTATAAGTGATGACACTGTCTCCCCTCATCTCTTTCATGACTAAATTTATCTCAGGACCTGGAAAAGATATCAAAATGTTACTAACTGATAAAATGTGCTCCATGATATCAAAAATACTTTGTCAGTTGATAACATTTTGATATCTTGACAGGAACCGAGATAAATTGACTCAAAATCCACGGTAAATCGTATGTATGAAAATACATTCTAATTCTCCTTAATATGAAACCTTTCAATTTCTTTTTTCTGGTTGAGGTTTTGCAGTTTGAAAAATATGTGTATGAGTAATTGGCTCCAAAAAAAATCACAAATTTACAAAATAGAAACCAAAAAAGT</canonical>
            <polymorphic>AGTGTGCATGACAGAAGATGTTGGATATCATGTGCACGATTCCACAGATTCCAAAAACGTAGAAGAAGATGACGTGGACTTCTGGAAAAAGAATATTTATGTAGTGTGGCTGTATTGATTCACGGAACTTACGAATATTCTCTCGCTCTCCAATAATTGATAATCCTGATAAGAAAATGAGTTCCATCAATCCCACAACAAAGTACAGATATCTGCTGAGCTCATACAGCCAAACGCGTTTGTAGTTCACATTTCGCATTCGTTTGTATCGCGAAACTGGAAACGGGGTTAAGTTCGAAGAAAAAACTATTAGGGTGTGACCAAATTGAACTAATTTTTAAAATATTTTCAATACGCAATATCATAAACTTATGAAACAGAAAATAAAGGGATAAGTGTAGAGTTATACTTATGACGGTAAACGAATAGTTCTCCTGAAGTAAATTTACATTCAAATCAAAATCAAATTATAGAAAATTTCGCAACATTCAGTGTAACAYAAATGAAACAGATAAAAAAAACTCACAGCCAGTAATGAGTTCTACCACTCGAATAGGTACATGGAAGAGGAGAAACAGTTGCCAGAATGTTCTTTCGACTGGAAGATTGATGATTCTGGAGAGGGATGGAAGGCGGGCGCGCTGAAACAAGAAACGTAATCACCTATAAGTGATGACACTGTCTCCCCTCATCTCTTTCATGACTAAATTTATCTCAGGACCTGGAAAAGATATCAAAATGTTACTAACTGATAAAATGTGCTCCATGATATCAAAAATACTTTGTCAGTTGATAACATTTTGATATCTTGACAGGAACCGAGATAAATTGACTCAAAATCCACGGTAAATCGTATGTATGAAAATACATTCTAATTCTCCTTAATATGAAACCTTTCAATTTCTTTTTTCTGGTTGAGGTTTTGCAGTTTGAAAAATATGTGTATGAGTAATTGGCTCCAAAAAAAATCACAAATTTACAAAATAGAAACCAAAAAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>115 100 96 83 82 79 73 68 54 32 30 29 28 28 26 22 14 10 8 6 5 4 2 2 2 2</canonical_bands>
                <polymorphic_bands>115 100 96 83 82 79 73 68 54 32 31 30 29 28 28 22 14 10 8 6 4 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAAACGAATAGTTCTCCTGAAGT</pcr_primer_p1>
		<pcr_primer_p2>TAGGTGATTACGTTTCTTGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTAAACGAATAGTTCTCCTGAAGTAAATTTACATTCAAATCAAAATCAAATTATAGAAAATTTCGCAACATTCAGTGTAACACAAATGAAACAGATAAAAAAAACTCACAGCCAGTAATGAGTTCTACCACTCGAATAGGTACATGGAAGAGGAGAAACAGTTGCCAGAATGTTCTTTCGACTGGAAGATTGATGATTCTGGAGAGGGATGGAAGGCGGGCGCGCTGAAACAAGAAACGTAATCACCTA</canonical_amplicon>
		<polymorphic_amplicon>GTAAACGAATAGTTCTCCTGAAGTAAATTTACATTCAAATCAAAATCAAATTATAGAAAATTTCGCAACATTCAGTGTAACAYAAATGAAACAGATAAAAAAAACTCACAGCCAGTAATGAGTTCTACCACTCGAATAGGTACATGGAAGAGGAGAAACAGTTGCCAGAATGTTCTTTCGACTGGAAGATTGATGATTCTGGAGAGGGATGGAAGGCGGGCGCGCTGAAACAAGAAACGTAATCACCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18384</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>116000</contig_pos>
        <strand>+</strand>
        <context>TTATACTTAT[A/G]ACGGTAAACG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAAACTTATGAAACAGAAAATAAAGGGATAAGTGTAGAGTTATACTTAT</left_flank>
        <right_flank>ACGGTAAACGAATAGTTCTCCTGAAGTAAATTTACATTCAAATCAAAATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATGAATGTAACCCCATGAAATAAAATGCTCTGTTTTTGAAAAAGTCAGTATTCAACTCACATAAGGATTCAAATAATACAGTGAGTGTGCATGACAGAAGATGTTGGATATCATGTGCACGATTCCACAGATTCCAAAAACGTAGAAGAAGATGACGTGGACTTCTGGAAAAAGAATATTTATGTAGTGTGGCTGTATTGATTCACGGAACTTACGAATATTCTCTCGCTCTCCAATAATTGATAATCCTGATAAGAAAATGAGTTCCATCAATCCCACAACAAAGTACAGATATCTGCTGAGCTCATACAGCCAAACGCGTTTGTAGTTCACATTTCGCATTCGTTTGTATCGCGAAACTGGAAACGGGGTTAAGTTCGAAGAAAAAACTATTAGGGTGTGACCAAATTGAACTAATTTTTAAAATATTTTCAATACGCAATATCATAAACTTATGAAACAGAAAATAAAGGGATAAGTGTAGAGTTATACTTATGACGGTAAACGAATAGTTCTCCTGAAGTAAATTTACATTCAAATCAAAATCAAATTATAGAAAATTTCGCAACATTCAGTGTAACACAAATGAAACAGATAAAAAAAACTCACAGCCAGTAATGAGTTCTACCACTCGAATAGGTACATGGAAGAGGAGAAACAGTTGCCAGAATGTTCTTTCGACTGGAAGATTGATGATTCTGGAGAGGGATGGAAGGCGGGCGCGCTGAAACAAGAAACGTAATCACCTATAAGTGATGACACTGTCTCCCCTCATCTCTTTCATGACTAAATTTATCTCAGGACCTGGAAAAGATATCAAAATGTTACTAACTGATAAAATGTGCTCCATGATATCAAAAATACTTTGTCAGTTGATAACATTTTGATATCTTGACAGGAACCGAGATAAATTGACTCAAAATCCACGGTAAATCGTATGTATGAAAATACATTCTAATTCTCCTTAATATGAAACCTTTCAATTTCTTTTTTCTGG</canonical>
            <polymorphic>GAAATGAATGTAACCCCATGAAATAAAATGCTCTGTTTTTGAAAAAGTCAGTATTCAACTCACATAAGGATTCAAATAATACAGTGAGTGTGCATGACAGAAGATGTTGGATATCATGTGCACGATTCCACAGATTCCAAAAACGTAGAAGAAGATGACGTGGACTTCTGGAAAAAGAATATTTATGTAGTGTGGCTGTATTGATTCACGGAACTTACGAATATTCTCTCGCTCTCCAATAATTGATAATCCTGATAAGAAAATGAGTTCCATCAATCCCACAACAAAGTACAGATATCTGCTGAGCTCATACAGCCAAACGCGTTTGTAGTTCACATTTCGCATTCGTTTGTATCGCGAAACTGGAAACGGGGTTAAGTTCGAAGAAAAAACTATTAGGGTGTGACCAAATTGAACTAATTTTTAAAATATTTTCAATACGCAATATCATAAACTTATGAAACAGAAAATAAAGGGATAAGTGTAGAGTTATACTTATRACGGTAAACGAATAGTTCTCCTGAAGTAAATTTACATTCAAATCAAAATCAAATTATAGAAAATTTCGCAACATTCAGTGTAACACAAATGAAACAGATAAAAAAAACTCACAGCCAGTAATGAGTTCTACCACTCGAATAGGTACATGGAAGAGGAGAAACAGTTGCCAGAATGTTCTTTCGACTGGAAGATTGATGATTCTGGAGAGGGATGGAAGGCGGGCGCGCTGAAACAAGAAACGTAATCACCTATAAGTGATGACACTGTCTCCCCTCATCTCTTTCATGACTAAATTTATCTCAGGACCTGGAAAAGATATCAAAATGTTACTAACTGATAAAATGTGCTCCATGATATCAAAAATACTTTGTCAGTTGATAACATTTTGATATCTTGACAGGAACCGAGATAAATTGACTCAAAATCCACGGTAAATCGTATGTATGAAAATACATTCTAATTCTCCTTAATATGAAACCTTTCAATTTCTTTTTTCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAATACGCAATATCATAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGAACATTCTGGCAACTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAATACGCAATATCATAAACTTATGAAACAGAAAATAAAGGGATAAGTGTAGAGTTATACTTATGACGGTAAACGAATAGTTCTCCTGAAGTAAATTTACATTCAAATCAAAATCAAATTATAGAAAATTTCGCAACATTCAGTGTAACACAAATGAAACAGATAAAAAAAACTCACAGCCAGTAATGAGTTCTACCACTCGAATAGGTACATGGAAGAGGAGAAACAGTTGCCAGAATGTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAATACGCAATATCATAAACTTATGAAACAGAAAATAAAGGGATAAGTGTAGAGTTATACTTATRACGGTAAACGAATAGTTCTCCTGAAGTAAATTTACATTCAAATCAAAATCAAATTATAGAAAATTTCGCAACATTCAGTGTAACACAAATGAAACAGATAAAAAAAACTCACAGCCAGTAATGAGTTCTACCACTCGAATAGGTACATGGAAGAGGAGAAACAGTTGCCAGAATGTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18385</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>115913</contig_pos>
        <strand>+</strand>
        <context>GTGACCAAAT[C/T]GAACTAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGGAAACGGGGTTAAGTTCGAAGAAAAAACTATTAGGGTGTGACCAAAT</left_flank>
        <right_flank>GAACTAATTTTTAAAATATTTTCAATACGCAATATCATAAACTTATGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAGTTTACCACTCTTTTATATCTTTCACAGGAACCAAGATAAGTTGGCTCAAAGTTCTGGGGGTCATTATATTAGAGGTTTTACAGGAAATGAATGTAACCCCATGAAATAAAATGCTCTGTTTTTGAAAAAGTCAGTATTCAACTCACATAAGGATTCAAATAATACAGTGAGTGTGCATGACAGAAGATGTTGGATATCATGTGCACGATTCCACAGATTCCAAAAACGTAGAAGAAGATGACGTGGACTTCTGGAAAAAGAATATTTATGTAGTGTGGCTGTATTGATTCACGGAACTTACGAATATTCTCTCGCTCTCCAATAATTGATAATCCTGATAAGAAAATGAGTTCCATCAATCCCACAACAAAGTACAGATATCTGCTGAGCTCATACAGCCAAACGCGTTTGTAGTTCACATTTCGCATTCGTTTGTATCGCGAAACTGGAAACGGGGTTAAGTTCGAAGAAAAAACTATTAGGGTGTGACCAAATTGAACTAATTTTTAAAATATTTTCAATACGCAATATCATAAACTTATGAAACAGAAAATAAAGGGATAAGTGTAGAGTTATACTTATGACGGTAAACGAATAGTTCTCCTGAAGTAAATTTACATTCAAATCAAAATCAAATTATAGAAAATTTCGCAACATTCAGTGTAACACAAATGAAACAGATAAAAAAAACTCACAGCCAGTAATGAGTTCTACCACTCGAATAGGTACATGGAAGAGGAGAAACAGTTGCCAGAATGTTCTTTCGACTGGAAGATTGATGATTCTGGAGAGGGATGGAAGGCGGGCGCGCTGAAACAAGAAACGTAATCACCTATAAGTGATGACACTGTCTCCCCTCATCTCTTTCATGACTAAATTTATCTCAGGACCTGGAAAAGATATCAAAATGTTACTAACTGATAAAATGTGCTCCATGATATCAAAAATACTTTGTCAGTTGATAACATTTTGATATCTTGACAGGAACCGAGATAA</canonical>
            <polymorphic>TAAGTTTACCACTCTTTTATATCTTTCACAGGAACCAAGATAAGTTGGCTCAAAGTTCTGGGGGTCATTATATTAGAGGTTTTACAGGAAATGAATGTAACCCCATGAAATAAAATGCTCTGTTTTTGAAAAAGTCAGTATTCAACTCACATAAGGATTCAAATAATACAGTGAGTGTGCATGACAGAAGATGTTGGATATCATGTGCACGATTCCACAGATTCCAAAAACGTAGAAGAAGATGACGTGGACTTCTGGAAAAAGAATATTTATGTAGTGTGGCTGTATTGATTCACGGAACTTACGAATATTCTCTCGCTCTCCAATAATTGATAATCCTGATAAGAAAATGAGTTCCATCAATCCCACAACAAAGTACAGATATCTGCTGAGCTCATACAGCCAAACGCGTTTGTAGTTCACATTTCGCATTCGTTTGTATCGCGAAACTGGAAACGGGGTTAAGTTCGAAGAAAAAACTATTAGGGTGTGACCAAATYGAACTAATTTTTAAAATATTTTCAATACGCAATATCATAAACTTATGAAACAGAAAATAAAGGGATAAGTGTAGAGTTATACTTATGACGGTAAACGAATAGTTCTCCTGAAGTAAATTTACATTCAAATCAAAATCAAATTATAGAAAATTTCGCAACATTCAGTGTAACACAAATGAAACAGATAAAAAAAACTCACAGCCAGTAATGAGTTCTACCACTCGAATAGGTACATGGAAGAGGAGAAACAGTTGCCAGAATGTTCTTTCGACTGGAAGATTGATGATTCTGGAGAGGGATGGAAGGCGGGCGCGCTGAAACAAGAAACGTAATCACCTATAAGTGATGACACTGTCTCCCCTCATCTCTTTCATGACTAAATTTATCTCAGGACCTGGAAAAGATATCAAAATGTTACTAACTGATAAAATGTGCTCCATGATATCAAAAATACTTTGTCAGTTGATAACATTTTGATATCTTGACAGGAACCGAGATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>327 231 169 121 110 23 10 9</canonical_bands>
                <polymorphic_bands>327 231 178 121 110 23 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTCTCCAATAATTGATAATCCT</pcr_primer_p1>
		<pcr_primer_p2>TCCCTTTATTTTCTGTTTCATAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCTCTCCAATAATTGATAATCCTGATAAGAAAATGAGTTCCATCAATCCCACAACAAAGTACAGATATCTGCTGAGCTCATACAGCCAAACGCGTTTGTAGTTCACATTTCGCATTCGTTTGTATCGCGAAACTGGAAACGGGGTTAAGTTCGAAGAAAAAACTATTAGGGTGTGACCAAATTGAACTAATTTTTAAAATATTTTCAATACGCAATATCATAAACTTATGAAACAGAAAATAAAGGGA</canonical_amplicon>
		<polymorphic_amplicon>GCTCTCCAATAATTGATAATCCTGATAAGAAAATGAGTTCCATCAATCCCACAACAAAGTACAGATATCTGCTGAGCTCATACAGCCAAACGCGTTTGTAGTTCACATTTCGCATTCGTTTGTATCGCGAAACTGGAAACGGGGTTAAGTTCGAAGAAAAAACTATTAGGGTGTGACCAAATYGAACTAATTTTTAAAATATTTTCAATACGCAATATCATAAACTTATGAAACAGAAAATAAAGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18386</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>115896</contig_pos>
        <strand>+</strand>
        <context>GAAAAAACTA[C/T]TAGGGTGTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGTTTGTATCGCGAAACTGGAAACGGGGTTAAGTTCGAAGAAAAAACTA</left_flank>
        <right_flank>TAGGGTGTGACCAAATTGAACTAATTTTTAAAATATTTTCAATACGCAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGAAAAAAACTTTGGGTAAGTTTACCACTCTTTTATATCTTTCACAGGAACCAAGATAAGTTGGCTCAAAGTTCTGGGGGTCATTATATTAGAGGTTTTACAGGAAATGAATGTAACCCCATGAAATAAAATGCTCTGTTTTTGAAAAAGTCAGTATTCAACTCACATAAGGATTCAAATAATACAGTGAGTGTGCATGACAGAAGATGTTGGATATCATGTGCACGATTCCACAGATTCCAAAAACGTAGAAGAAGATGACGTGGACTTCTGGAAAAAGAATATTTATGTAGTGTGGCTGTATTGATTCACGGAACTTACGAATATTCTCTCGCTCTCCAATAATTGATAATCCTGATAAGAAAATGAGTTCCATCAATCCCACAACAAAGTACAGATATCTGCTGAGCTCATACAGCCAAACGCGTTTGTAGTTCACATTTCGCATTCGTTTGTATCGCGAAACTGGAAACGGGGTTAAGTTCGAAGAAAAAACTATTAGGGTGTGACCAAATTGAACTAATTTTTAAAATATTTTCAATACGCAATATCATAAACTTATGAAACAGAAAATAAAGGGATAAGTGTAGAGTTATACTTATGACGGTAAACGAATAGTTCTCCTGAAGTAAATTTACATTCAAATCAAAATCAAATTATAGAAAATTTCGCAACATTCAGTGTAACACAAATGAAACAGATAAAAAAAACTCACAGCCAGTAATGAGTTCTACCACTCGAATAGGTACATGGAAGAGGAGAAACAGTTGCCAGAATGTTCTTTCGACTGGAAGATTGATGATTCTGGAGAGGGATGGAAGGCGGGCGCGCTGAAACAAGAAACGTAATCACCTATAAGTGATGACACTGTCTCCCCTCATCTCTTTCATGACTAAATTTATCTCAGGACCTGGAAAAGATATCAAAATGTTACTAACTGATAAAATGTGCTCCATGATATCAAAAATACTTTGTCAGTTGATAACATTTTGATATCTT</canonical>
            <polymorphic>ACGAAAAAAACTTTGGGTAAGTTTACCACTCTTTTATATCTTTCACAGGAACCAAGATAAGTTGGCTCAAAGTTCTGGGGGTCATTATATTAGAGGTTTTACAGGAAATGAATGTAACCCCATGAAATAAAATGCTCTGTTTTTGAAAAAGTCAGTATTCAACTCACATAAGGATTCAAATAATACAGTGAGTGTGCATGACAGAAGATGTTGGATATCATGTGCACGATTCCACAGATTCCAAAAACGTAGAAGAAGATGACGTGGACTTCTGGAAAAAGAATATTTATGTAGTGTGGCTGTATTGATTCACGGAACTTACGAATATTCTCTCGCTCTCCAATAATTGATAATCCTGATAAGAAAATGAGTTCCATCAATCCCACAACAAAGTACAGATATCTGCTGAGCTCATACAGCCAAACGCGTTTGTAGTTCACATTTCGCATTCGTTTGTATCGCGAAACTGGAAACGGGGTTAAGTTCGAAGAAAAAACTAYTAGGGTGTGACCAAATTGAACTAATTTTTAAAATATTTTCAATACGCAATATCATAAACTTATGAAACAGAAAATAAAGGGATAAGTGTAGAGTTATACTTATGACGGTAAACGAATAGTTCTCCTGAAGTAAATTTACATTCAAATCAAAATCAAATTATAGAAAATTTCGCAACATTCAGTGTAACACAAATGAAACAGATAAAAAAAACTCACAGCCAGTAATGAGTTCTACCACTCGAATAGGTACATGGAAGAGGAGAAACAGTTGCCAGAATGTTCTTTCGACTGGAAGATTGATGATTCTGGAGAGGGATGGAAGGCGGGCGCGCTGAAACAAGAAACGTAATCACCTATAAGTGATGACACTGTCTCCCCTCATCTCTTTCATGACTAAATTTATCTCAGGACCTGGAAAAGATATCAAAATGTTACTAACTGATAAAATGTGCTCCATGATATCAAAAATACTTTGTCAGTTGATAACATTTTGATATCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCTCCAATAATTGATAATCCT</pcr_primer_p1>
		<pcr_primer_p2>TCCCTTTATTTTCTGTTTCATAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCTCTCCAATAATTGATAATCCTGATAAGAAAATGAGTTCCATCAATCCCACAACAAAGTACAGATATCTGCTGAGCTCATACAGCCAAACGCGTTTGTAGTTCACATTTCGCATTCGTTTGTATCGCGAAACTGGAAACGGGGTTAAGTTCGAAGAAAAAACTATTAGGGTGTGACCAAATTGAACTAATTTTTAAAATATTTTCAATACGCAATATCATAAACTTATGAAACAGAAAATAAAGGGA</canonical_amplicon>
		<polymorphic_amplicon>GCTCTCCAATAATTGATAATCCTGATAAGAAAATGAGTTCCATCAATCCCACAACAAAGTACAGATATCTGCTGAGCTCATACAGCCAAACGCGTTTGTAGTTCACATTTCGCATTCGTTTGTATCGCGAAACTGGAAACGGGGTTAAGTTCGAAGAAAAAACTAYTAGGGTGTGACCAAATTGAACTAATTTTTAAAATATTTTCAATACGCAATATCATAAACTTATGAAACAGAAAATAAAGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18387</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>115870</contig_pos>
        <strand>+</strand>
        <context>AAACTGGAAA[C/T]GGGGTTAAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGCGTTTGTAGTTCACATTTCGCATTCGTTTGTATCGCGAAACTGGAAA</left_flank>
        <right_flank>GGGGTTAAGTTCGAAGAAAAAACTATTAGGGTGTGACCAAATTGAACTAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGTAGAATTTATCAAAAATTAATCACGAAAAAAACTTTGGGTAAGTTTACCACTCTTTTATATCTTTCACAGGAACCAAGATAAGTTGGCTCAAAGTTCTGGGGGTCATTATATTAGAGGTTTTACAGGAAATGAATGTAACCCCATGAAATAAAATGCTCTGTTTTTGAAAAAGTCAGTATTCAACTCACATAAGGATTCAAATAATACAGTGAGTGTGCATGACAGAAGATGTTGGATATCATGTGCACGATTCCACAGATTCCAAAAACGTAGAAGAAGATGACGTGGACTTCTGGAAAAAGAATATTTATGTAGTGTGGCTGTATTGATTCACGGAACTTACGAATATTCTCTCGCTCTCCAATAATTGATAATCCTGATAAGAAAATGAGTTCCATCAATCCCACAACAAAGTACAGATATCTGCTGAGCTCATACAGCCAAACGCGTTTGTAGTTCACATTTCGCATTCGTTTGTATCGCGAAACTGGAAACGGGGTTAAGTTCGAAGAAAAAACTATTAGGGTGTGACCAAATTGAACTAATTTTTAAAATATTTTCAATACGCAATATCATAAACTTATGAAACAGAAAATAAAGGGATAAGTGTAGAGTTATACTTATGACGGTAAACGAATAGTTCTCCTGAAGTAAATTTACATTCAAATCAAAATCAAATTATAGAAAATTTCGCAACATTCAGTGTAACACAAATGAAACAGATAAAAAAAACTCACAGCCAGTAATGAGTTCTACCACTCGAATAGGTACATGGAAGAGGAGAAACAGTTGCCAGAATGTTCTTTCGACTGGAAGATTGATGATTCTGGAGAGGGATGGAAGGCGGGCGCGCTGAAACAAGAAACGTAATCACCTATAAGTGATGACACTGTCTCCCCTCATCTCTTTCATGACTAAATTTATCTCAGGACCTGGAAAAGATATCAAAATGTTACTAACTGATAAAATGTGCTCCATGATATCAAAAATACTTT</canonical>
            <polymorphic>ACTGTAGAATTTATCAAAAATTAATCACGAAAAAAACTTTGGGTAAGTTTACCACTCTTTTATATCTTTCACAGGAACCAAGATAAGTTGGCTCAAAGTTCTGGGGGTCATTATATTAGAGGTTTTACAGGAAATGAATGTAACCCCATGAAATAAAATGCTCTGTTTTTGAAAAAGTCAGTATTCAACTCACATAAGGATTCAAATAATACAGTGAGTGTGCATGACAGAAGATGTTGGATATCATGTGCACGATTCCACAGATTCCAAAAACGTAGAAGAAGATGACGTGGACTTCTGGAAAAAGAATATTTATGTAGTGTGGCTGTATTGATTCACGGAACTTACGAATATTCTCTCGCTCTCCAATAATTGATAATCCTGATAAGAAAATGAGTTCCATCAATCCCACAACAAAGTACAGATATCTGCTGAGCTCATACAGCCAAACGCGTTTGTAGTTCACATTTCGCATTCGTTTGTATCGCGAAACTGGAAAYGGGGTTAAGTTCGAAGAAAAAACTATTAGGGTGTGACCAAATTGAACTAATTTTTAAAATATTTTCAATACGCAATATCATAAACTTATGAAACAGAAAATAAAGGGATAAGTGTAGAGTTATACTTATGACGGTAAACGAATAGTTCTCCTGAAGTAAATTTACATTCAAATCAAAATCAAATTATAGAAAATTTCGCAACATTCAGTGTAACACAAATGAAACAGATAAAAAAAACTCACAGCCAGTAATGAGTTCTACCACTCGAATAGGTACATGGAAGAGGAGAAACAGTTGCCAGAATGTTCTTTCGACTGGAAGATTGATGATTCTGGAGAGGGATGGAAGGCGGGCGCGCTGAAACAAGAAACGTAATCACCTATAAGTGATGACACTGTCTCCCCTCATCTCTTTCATGACTAAATTTATCTCAGGACCTGGAAAAGATATCAAAATGTTACTAACTGATAAAATGTGCTCCATGATATCAAAAATACTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCTCCAATAATTGATAATCCT</pcr_primer_p1>
		<pcr_primer_p2>TCCCTTTATTTTCTGTTTCATAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCTCTCCAATAATTGATAATCCTGATAAGAAAATGAGTTCCATCAATCCCACAACAAAGTACAGATATCTGCTGAGCTCATACAGCCAAACGCGTTTGTAGTTCACATTTCGCATTCGTTTGTATCGCGAAACTGGAAACGGGGTTAAGTTCGAAGAAAAAACTATTAGGGTGTGACCAAATTGAACTAATTTTTAAAATATTTTCAATACGCAATATCATAAACTTATGAAACAGAAAATAAAGGGA</canonical_amplicon>
		<polymorphic_amplicon>GCTCTCCAATAATTGATAATCCTGATAAGAAAATGAGTTCCATCAATCCCACAACAAAGTACAGATATCTGCTGAGCTCATACAGCCAAACGCGTTTGTAGTTCACATTTCGCATTCGTTTGTATCGCGAAACTGGAAAYGGGGTTAAGTTCGAAGAAAAAACTATTAGGGTGTGACCAAATTGAACTAATTTTTAAAATATTTTCAATACGCAATATCATAAACTTATGAAACAGAAAATAAAGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18388</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>195547</contig_pos>
        <strand>+</strand>
        <context>ATTCCGCCTG[A/T]GTCCGTGCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCTCTTCTAATTGTTGAATTATCTGTCGACATCTATCCAATTCCGCCTG</left_flank>
        <right_flank>GTCCGTGCCAATTCTCCACTCAATACACTTTTTGCACTTTCAATCGTCGC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTAAAAAAAACCCTCAGAAGTTTTGAAGTCCGGTAGGCTTAAAGTTTATGATTTCCCGTACCTGGATTGATCGAAAATGGAAAAAAAAATCTGGGAATCTCAAACATTTTAGGATTCCTCTAAAACCAGGATCATCAAAATTATTCAAAAACCAAATTTTTCAAGAATTACAAAAAGTGGTAGTTGTAAAATAATTCGGTTTTAAGTTTCACATAAATAAACAACAGTTGTATTTCCACTATTAGAAACAACACACAACAGGTAGTTTCTAAAATTCAAAGATGTCTCATTGAAAAAAACTAACGAGTGAGCAATTCAATCTGTTTGTACTGTCTCCGAATCTTGGCCTTCAATGCACAATTCTCATCTCTCAAATTCTCAATTTCAAAATTCAAATTGGATTGATGTCGTTCGAAACTGTTTCCCAATGTCTCTTGACTCTTGATATTCTCTTCTAATTGTTGAATTATCTGTCGACATCTATCCAATTCCGCCTGAGTCCGTGCCAATTCTCCACTCAATACACTTTTTGCACTTTCAATCGTCGCCAGTCTCGATTGTTTCAATTCTGTCTCTTTCTCTGATGCCTCTGCTCGATCCATTGCTCTTTTTCTCTCTGCTAAAATTTCGGTTTTCGAGTCTTCTATCGATTCTTCATGCTTCTTTTTCCATTCTTCACAATCTGCCAATGCTTTTCTCAGACGAAGTGCCAAATTATCTGCATTCTTTTGGGCAGAATTGAATTGACGAGTCGTTTCTTGTAATTGATTTGTTTGCTTTCGAACCGTCGTTTGCAGTGATTCTTTTTCCTGGAAACATAATGAGAGAGATTGATGAAGTCATCGAACATTTCAAAAATGATTTGAAACGGAAACTTTGATTCATGGAATTGTAGTAAAATTATTTTTAGCTACCGAAAATGCTTTTATAAAACCTCACCCTATCCTTGTACATTGAGCTAAATTATTTCAATTTCTGAGATATCAAATTTTTTAACA</canonical>
            <polymorphic>TTTTAAAAAAAACCCTCAGAAGTTTTGAAGTCCGGTAGGCTTAAAGTTTATGATTTCCCGTACCTGGATTGATCGAAAATGGAAAAAAAAATCTGGGAATCTCAAACATTTTAGGATTCCTCTAAAACCAGGATCATCAAAATTATTCAAAAACCAAATTTTTCAAGAATTACAAAAAGTGGTAGTTGTAAAATAATTCGGTTTTAAGTTTCACATAAATAAACAACAGTTGTATTTCCACTATTAGAAACAACACACAACAGGTAGTTTCTAAAATTCAAAGATGTCTCATTGAAAAAAACTAACGAGTGAGCAATTCAATCTGTTTGTACTGTCTCCGAATCTTGGCCTTCAATGCACAATTCTCATCTCTCAAATTCTCAATTTCAAAATTCAAATTGGATTGATGTCGTTCGAAACTGTTTCCCAATGTCTCTTGACTCTTGATATTCTCTTCTAATTGTTGAATTATCTGTCGACATCTATCCAATTCCGCCTGWGTCCGTGCCAATTCTCCACTCAATACACTTTTTGCACTTTCAATCGTCGCCAGTCTCGATTGTTTCAATTCTGTCTCTTTCTCTGATGCCTCTGCTCGATCCATTGCTCTTTTTCTCTCTGCTAAAATTTCGGTTTTCGAGTCTTCTATCGATTCTTCATGCTTCTTTTTCCATTCTTCACAATCTGCCAATGCTTTTCTCAGACGAAGTGCCAAATTATCTGCATTCTTTTGGGCAGAATTGAATTGACGAGTCGTTTCTTGTAATTGATTTGTTTGCTTTCGAACCGTCGTTTGCAGTGATTCTTTTTCCTGGAAACATAATGAGAGAGATTGATGAAGTCATCGAACATTTCAAAAATGATTTGAAACGGAAACTTTGATTCATGGAATTGTAGTAAAATTATTTTTAGCTACCGAAAATGCTTTTATAAAACCTCACCCTATCCTTGTACATTGAGCTAAATTATTTCAATTTCTGAGATATCAAATTTTTTAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>482 279 202 22 15</canonical_bands>
                <polymorphic_bands>684 279 22 15</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>225 140 119 100 99 97 80 60 50 18 12</canonical_bands>
                <polymorphic_bands>225 200 119 100 99 97 80 50 18 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTGTTTCCCAATGTCTCT</pcr_primer_p1>
		<pcr_primer_p2>CATGAAGAATCGATAGAAGACTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAACTGTTTCCCAATGTCTCTTGACTCTTGATATTCTCTTCTAATTGTTGAATTATCTGTCGACATCTATCCAATTCCGCCTGAGTCCGTGCCAATTCTCCACTCAATACACTTTTTGCACTTTCAATCGTCGCCAGTCTCGATTGTTTCAATTCTGTCTCTTTCTCTGATGCCTCTGCTCGATCCATTGCTCTTTTTCTCTCTGCTAAAATTTCGGTTTTCGAGTCTTCTATCGATTCTTCATG</canonical_amplicon>
		<polymorphic_amplicon>AAACTGTTTCCCAATGTCTCTTGACTCTTGATATTCTCTTCTAATTGTTGAATTATCTGTCGACATCTATCCAATTCCGCCTGWGTCCGTGCCAATTCTCCACTCAATACACTTTTTGCACTTTCAATCGTCGCCAGTCTCGATTGTTTCAATTCTGTCTCTTTCTCTGATGCCTCTGCTCGATCCATTGCTCTTTTTCTCTCTGCTAAAATTTCGGTTTTCGAGTCTTCTATCGATTCTTCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18389</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>195600</contig_pos>
        <strand>+</strand>
        <context>ATCGTCGCCA[G/T]TCTCGATTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCGTGCCAATTCTCCACTCAATACACTTTTTGCACTTTCAATCGTCGCCA</left_flank>
        <right_flank>TCTCGATTGTTTCAATTCTGTCTCTTTCTCTGATGCCTCTGCTCGATCCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCCGTACCTGGATTGATCGAAAATGGAAAAAAAAATCTGGGAATCTCAAACATTTTAGGATTCCTCTAAAACCAGGATCATCAAAATTATTCAAAAACCAAATTTTTCAAGAATTACAAAAAGTGGTAGTTGTAAAATAATTCGGTTTTAAGTTTCACATAAATAAACAACAGTTGTATTTCCACTATTAGAAACAACACACAACAGGTAGTTTCTAAAATTCAAAGATGTCTCATTGAAAAAAACTAACGAGTGAGCAATTCAATCTGTTTGTACTGTCTCCGAATCTTGGCCTTCAATGCACAATTCTCATCTCTCAAATTCTCAATTTCAAAATTCAAATTGGATTGATGTCGTTCGAAACTGTTTCCCAATGTCTCTTGACTCTTGATATTCTCTTCTAATTGTTGAATTATCTGTCGACATCTATCCAATTCCGCCTGAGTCCGTGCCAATTCTCCACTCAATACACTTTTTGCACTTTCAATCGTCGCCAGTCTCGATTGTTTCAATTCTGTCTCTTTCTCTGATGCCTCTGCTCGATCCATTGCTCTTTTTCTCTCTGCTAAAATTTCGGTTTTCGAGTCTTCTATCGATTCTTCATGCTTCTTTTTCCATTCTTCACAATCTGCCAATGCTTTTCTCAGACGAAGTGCCAAATTATCTGCATTCTTTTGGGCAGAATTGAATTGACGAGTCGTTTCTTGTAATTGATTTGTTTGCTTTCGAACCGTCGTTTGCAGTGATTCTTTTTCCTGGAAACATAATGAGAGAGATTGATGAAGTCATCGAACATTTCAAAAATGATTTGAAACGGAAACTTTGATTCATGGAATTGTAGTAAAATTATTTTTAGCTACCGAAAATGCTTTTATAAAACCTCACCCTATCCTTGTACATTGAGCTAAATTATTTCAATTTCTGAGATATCAAATTTTTTAACATTTAAAATTTTTTCGAAATTCTATAATTCTTTTAAAAACACCAGCCTGTTTGC</canonical>
            <polymorphic>TTTCCCGTACCTGGATTGATCGAAAATGGAAAAAAAAATCTGGGAATCTCAAACATTTTAGGATTCCTCTAAAACCAGGATCATCAAAATTATTCAAAAACCAAATTTTTCAAGAATTACAAAAAGTGGTAGTTGTAAAATAATTCGGTTTTAAGTTTCACATAAATAAACAACAGTTGTATTTCCACTATTAGAAACAACACACAACAGGTAGTTTCTAAAATTCAAAGATGTCTCATTGAAAAAAACTAACGAGTGAGCAATTCAATCTGTTTGTACTGTCTCCGAATCTTGGCCTTCAATGCACAATTCTCATCTCTCAAATTCTCAATTTCAAAATTCAAATTGGATTGATGTCGTTCGAAACTGTTTCCCAATGTCTCTTGACTCTTGATATTCTCTTCTAATTGTTGAATTATCTGTCGACATCTATCCAATTCCGCCTGAGTCCGTGCCAATTCTCCACTCAATACACTTTTTGCACTTTCAATCGTCGCCAKTCTCGATTGTTTCAATTCTGTCTCTTTCTCTGATGCCTCTGCTCGATCCATTGCTCTTTTTCTCTCTGCTAAAATTTCGGTTTTCGAGTCTTCTATCGATTCTTCATGCTTCTTTTTCCATTCTTCACAATCTGCCAATGCTTTTCTCAGACGAAGTGCCAAATTATCTGCATTCTTTTGGGCAGAATTGAATTGACGAGTCGTTTCTTGTAATTGATTTGTTTGCTTTCGAACCGTCGTTTGCAGTGATTCTTTTTCCTGGAAACATAATGAGAGAGATTGATGAAGTCATCGAACATTTCAAAAATGATTTGAAACGGAAACTTTGATTCATGGAATTGTAGTAAAATTATTTTTAGCTACCGAAAATGCTTTTATAAAACCTCACCCTATCCTTGTACATTGAGCTAAATTATTTCAATTTCTGAGATATCAAATTTTTTAACATTTAAAATTTTTTCGAAATTCTATAATTCTTTTAAAAACACCAGCCTGTTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTGTTTCCCAATGTCTCT</pcr_primer_p1>
		<pcr_primer_p2>CATGAAGAATCGATAGAAGACTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAACTGTTTCCCAATGTCTCTTGACTCTTGATATTCTCTTCTAATTGTTGAATTATCTGTCGACATCTATCCAATTCCGCCTGAGTCCGTGCCAATTCTCCACTCAATACACTTTTTGCACTTTCAATCGTCGCCAGTCTCGATTGTTTCAATTCTGTCTCTTTCTCTGATGCCTCTGCTCGATCCATTGCTCTTTTTCTCTCTGCTAAAATTTCGGTTTTCGAGTCTTCTATCGATTCTTCATG</canonical_amplicon>
		<polymorphic_amplicon>AAACTGTTTCCCAATGTCTCTTGACTCTTGATATTCTCTTCTAATTGTTGAATTATCTGTCGACATCTATCCAATTCCGCCTGAGTCCGTGCCAATTCTCCACTCAATACACTTTTTGCACTTTCAATCGTCGCCAKTCTCGATTGTTTCAATTCTGTCTCTTTCTCTGATGCCTCTGCTCGATCCATTGCTCTTTTTCTCTCTGCTAAAATTTCGGTTTTCGAGTCTTCTATCGATTCTTCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18390</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>198470</contig_pos>
        <strand>+</strand>
        <context>TTTWGATTTT[A/T]ATAAATTTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCAGTGCGATTTGATCGAAACGAGCTATTTTTTCCTGAATTTTGATTTT</left_flank>
        <right_flank>ATAAATTTCCATTGACAAGAAGCTTACATTCAATTCGGTGATCAGTTTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTGCAAACTCCAAGGTTTTTTTTGCTGTTTTGAGTAGTTTTAAAGTAAAGGTCATTTTGAAAATAATGTAATTCTAATTGAATTTTCAAACTTCAAAAATTCTCACGAAAATTAAATATTCTAGTCTTTGATTTGCAGCAAACTTTTACGGATTTCAGAAGTTGCGAAGCTCAAAAAAGCGAAAAAATACTGTAGCAGTTCTATTATGTGTAGTTCTTTTCGTCACAGTTATATTCTGCACTTTTTATTCTCAAGTCCGGCTTTCGAATCAAAGTTGAAAATCCTTCAGATTCCAAATCAATTATATTCTTCCAGAAGAAACAGTAAAAAAACACTCACCAACTCATCAATTTTCTTCGCCTGCTTCTGAATAATCTCCTTGGCCGTCGTCAATTCCTCATTCAATTTCTCCTTTTCCCTCTCAATTTTCCTCGTCGAATTCCGTTCGTTCAGTGCGATTTGATCGAAACGAGCTATTTTTTCCTGAATTTTGATTTTTATAAATTTCCATTGACAAGAAGCTTACATTCAATTCGGTGATCAGTTTTTGCATATCTCCAATTGTGTTACTTTGTCTTGAAAATCTCGATTTCTCATCTTCCAATGCAGTTTCTAGTCTGGAAATTTTAGTGTTTTGGGGTTTTTTGAATCCTAGAAACTTTGCGATAGTAATCCTCTGTTCGTTCGTCTCATCCAACAACTTCTGAACCTGATTCTGAAGATCATCAATCAGTGACGTCTTCTCCAGAATCTCTTTCTCCATATTTGAATAATGAGTGTCTTGGCGGTTTTGGGATTCTTTGAGCTACAAAAAATAATTTTTTCCGTTTCATAAAATTTTTATTGAGGTGGGGGGTTCTATTAACATTGCTTTATCTCGAATCGAATGTTGAAACAAATCGAATTTTGATTTTGAAGGTTCTTGGACATTAAAAACGAGTTTTACTGTATTATTGTTTGTAGAACTCCTCATCTGGCTTCAACTCAAGGCAAAATTAC</canonical>
            <polymorphic>GTTGCAAACTCCAAGGTTTTTTTTGCTGTTTTGAGTAGTTTTAAAGTAAAGGTCATTTTGAAAATAATGTAATTCTAATTGAATTTTCAAACTTCAAAAATTCTCACGAAAATTAAATATTCTAGTCTTTGATTTGCAGCAAACTTTTACGGATTTCAGAAGTTGCGAAGCTCAAAAAAGCGAAAAAATACTGTAGCAGTTCTATTATGTGTAGTTCTTTTCGTCACAGTTATATTCTGCACTTTTTATTCTCAAGTCCGGCTTTCGAATCAAAGTTGAAAATCCTTCAGATTCCAAATCAATTATATTCTTCCAGAAGAAACAGTAAAAAAACACTCACCAACTCATCAATTTTCTTCGCCTGCTTCTGAATAATCTCCTTGGCCGTCGTCAATTCCTCATTCAATTTCTCCTTTTCCCTCTCAATTTTCCTCGTCGAATTCCGTTCGTTCAGTGCGATTTGATCGAAACGAGCTATTTTTTCCTGAATTTTGATTTTWATAAATTTCCATTGACAAGAAGCTTACATTCAATTCGGTGATCAGTTTTTGCATATCTCCAATTGTGTTACTTTGTCTTGAAAATCTCGATTTCTCATCTTCCAATGCAGTTTCTAGTCTGGAAATTTTAGTGTTTTGGGGTTTTTTGAATCCTAGAAACTTTGCGATAGTAATCCTCTGTTCGTTCGTCTCATCCAACAACTTCTGAACCTGATTCTGAAGATCATCAATCAGTGACGTCTTCTCCAGAATCTCTTTCTCCATATTTGAATAATGAGTGTCTTGGCGGTTTTGGGATTCTTTGAGCTACAAAAAATAATTTTTTCCGTTTCATAAAATTTTTATTGAGGTGGGGGGTTCTATTAACATTGCTTTATCTCGAATCGAATGTTGAAACAAATCGAATTTTGATTTTGAAGGTTCTTGGACATTAAAAACGAGTTTTACTGTATTATTGTTTGTAGAACTCCTCATCTGGCTTCAACTCAAGGCAAAATTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCAATTCCTCATTCAATTTCT</pcr_primer_p1>
		<pcr_primer_p2>CAAAACACTAAAATTTCCAGACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCAATTCCTCATTCAATTTCTCCTTTTCCCTCTCAATTTTCCTCGTCGAATTCCGTTCGTTCAGTGCGATTTGATCGAAACGAGCTATTTTTTCCTGAATTTTGATTTTTATAAATTTCCATTGACAAGAAGCTTACATTCAATTCGGTGATCAGTTTTTGCATATCTCCAATTGTGTTACTTTGTCTTGAAAATCTCGATTTCTCATCTTCCAATGCAGTTTCTAGTCTGGAAATTTTAGTGTTTTG</canonical_amplicon>
		<polymorphic_amplicon>GTCAATTCCTCATTCAATTTCTCCTTTTCCCTCTCAATTTTCCTCGTCGAATTCCGTTCGTTCAGTGCGATTTGATCGAAACGAGCTATTTTTTCCTGAATTTTGATTTTWATAAATTTCCATTGACAAGAAGCTTACATTCAATTCGGTGATCAGTTTTTGCATATCTCCAATTGTGTTACTTTGTCTTGAAAATCTCGATTTCTCATCTTCCAATGCAGTTTCTAGTCTGGAAATTTTAGTGTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18391</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>198463</contig_pos>
        <strand>+</strand>
        <context>TCCTGAATTT[A/T]GATTTTWATA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCGTTCGTTCAGTGCGATTTGATCGAAACGAGCTATTTTTTCCTGAATTT</left_flank>
        <right_flank>GATTTTTATAAATTTCCATTGACAAGAAGCTTACATTCAATTCGGTGATC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCTCATGTTGCAAACTCCAAGGTTTTTTTTGCTGTTTTGAGTAGTTTTAAAGTAAAGGTCATTTTGAAAATAATGTAATTCTAATTGAATTTTCAAACTTCAAAAATTCTCACGAAAATTAAATATTCTAGTCTTTGATTTGCAGCAAACTTTTACGGATTTCAGAAGTTGCGAAGCTCAAAAAAGCGAAAAAATACTGTAGCAGTTCTATTATGTGTAGTTCTTTTCGTCACAGTTATATTCTGCACTTTTTATTCTCAAGTCCGGCTTTCGAATCAAAGTTGAAAATCCTTCAGATTCCAAATCAATTATATTCTTCCAGAAGAAACAGTAAAAAAACACTCACCAACTCATCAATTTTCTTCGCCTGCTTCTGAATAATCTCCTTGGCCGTCGTCAATTCCTCATTCAATTTCTCCTTTTCCCTCTCAATTTTCCTCGTCGAATTCCGTTCGTTCAGTGCGATTTGATCGAAACGAGCTATTTTTTCCTGAATTTTGATTTTTATAAATTTCCATTGACAAGAAGCTTACATTCAATTCGGTGATCAGTTTTTGCATATCTCCAATTGTGTTACTTTGTCTTGAAAATCTCGATTTCTCATCTTCCAATGCAGTTTCTAGTCTGGAAATTTTAGTGTTTTGGGGTTTTTTGAATCCTAGAAACTTTGCGATAGTAATCCTCTGTTCGTTCGTCTCATCCAACAACTTCTGAACCTGATTCTGAAGATCATCAATCAGTGACGTCTTCTCCAGAATCTCTTTCTCCATATTTGAATAATGAGTGTCTTGGCGGTTTTGGGATTCTTTGAGCTACAAAAAATAATTTTTTCCGTTTCATAAAATTTTTATTGAGGTGGGGGGTTCTATTAACATTGCTTTATCTCGAATCGAATGTTGAAACAAATCGAATTTTGATTTTGAAGGTTCTTGGACATTAAAAACGAGTTTTACTGTATTATTGTTTGTAGAACTCCTCATCTGGCTTCAACTCAAGGCA</canonical>
            <polymorphic>CCCTCATGTTGCAAACTCCAAGGTTTTTTTTGCTGTTTTGAGTAGTTTTAAAGTAAAGGTCATTTTGAAAATAATGTAATTCTAATTGAATTTTCAAACTTCAAAAATTCTCACGAAAATTAAATATTCTAGTCTTTGATTTGCAGCAAACTTTTACGGATTTCAGAAGTTGCGAAGCTCAAAAAAGCGAAAAAATACTGTAGCAGTTCTATTATGTGTAGTTCTTTTCGTCACAGTTATATTCTGCACTTTTTATTCTCAAGTCCGGCTTTCGAATCAAAGTTGAAAATCCTTCAGATTCCAAATCAATTATATTCTTCCAGAAGAAACAGTAAAAAAACACTCACCAACTCATCAATTTTCTTCGCCTGCTTCTGAATAATCTCCTTGGCCGTCGTCAATTCCTCATTCAATTTCTCCTTTTCCCTCTCAATTTTCCTCGTCGAATTCCGTTCGTTCAGTGCGATTTGATCGAAACGAGCTATTTTTTCCTGAATTTWGATTTTTATAAATTTCCATTGACAAGAAGCTTACATTCAATTCGGTGATCAGTTTTTGCATATCTCCAATTGTGTTACTTTGTCTTGAAAATCTCGATTTCTCATCTTCCAATGCAGTTTCTAGTCTGGAAATTTTAGTGTTTTGGGGTTTTTTGAATCCTAGAAACTTTGCGATAGTAATCCTCTGTTCGTTCGTCTCATCCAACAACTTCTGAACCTGATTCTGAAGATCATCAATCAGTGACGTCTTCTCCAGAATCTCTTTCTCCATATTTGAATAATGAGTGTCTTGGCGGTTTTGGGATTCTTTGAGCTACAAAAAATAATTTTTTCCGTTTCATAAAATTTTTATTGAGGTGGGGGGTTCTATTAACATTGCTTTATCTCGAATCGAATGTTGAAACAAATCGAATTTTGATTTTGAAGGTTCTTGGACATTAAAAACGAGTTTTACTGTATTATTGTTTGTAGAACTCCTCATCTGGCTTCAACTCAAGGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAATTCCTCATTCAATTTCT</pcr_primer_p1>
		<pcr_primer_p2>CAAAACACTAAAATTTCCAGACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCAATTCCTCATTCAATTTCTCCTTTTCCCTCTCAATTTTCCTCGTCGAATTCCGTTCGTTCAGTGCGATTTGATCGAAACGAGCTATTTTTTCCTGAATTTTGATTTTTATAAATTTCCATTGACAAGAAGCTTACATTCAATTCGGTGATCAGTTTTTGCATATCTCCAATTGTGTTACTTTGTCTTGAAAATCTCGATTTCTCATCTTCCAATGCAGTTTCTAGTCTGGAAATTTTAGTGTTTTG</canonical_amplicon>
		<polymorphic_amplicon>GTCAATTCCTCATTCAATTTCTCCTTTTCCCTCTCAATTTTCCTCGTCGAATTCCGTTCGTTCAGTGCGATTTGATCGAAACGAGCTATTTTTTCCTGAATTTWGATTTTTATAAATTTCCATTGACAAGAAGCTTACATTCAATTCGGTGATCAGTTTTTGCATATCTCCAATTGTGTTACTTTGTCTTGAAAATCTCGATTTCTCATCTTCCAATGCAGTTTCTAGTCTGGAAATTTTAGTGTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18392</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>198279</contig_pos>
        <strand>+</strand>
        <context>TCAATTATAT[C/T]CTTCCAGAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGCTTTCGAATCAAAGTTGAAAATCCTTCAGATTCCAAATCAATTATAT</left_flank>
        <right_flank>CTTCCAGAAGAAACAGTAAAAAAACACTCACCAACTCATCAATTTTCTTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATCAGCAAAGTTTTAATCTAATTCTAACAAGCTTTTTTCAACTTTATAATACTTGTCGTATTATATCTTCGTTCCTGTTAAAGATATCAAAATCGGTCAACAGAAATATTTACTAGTATTTTATCAATTTGATACTTTTCACAGGAACCGAGATAAATATGGCCTAATTGTAAGTTGAAAGGCCCTCATGTTGCAAACTCCAAGGTTTTTTTTGCTGTTTTGAGTAGTTTTAAAGTAAAGGTCATTTTGAAAATAATGTAATTCTAATTGAATTTTCAAACTTCAAAAATTCTCACGAAAATTAAATATTCTAGTCTTTGATTTGCAGCAAACTTTTACGGATTTCAGAAGTTGCGAAGCTCAAAAAAGCGAAAAAATACTGTAGCAGTTCTATTATGTGTAGTTCTTTTCGTCACAGTTATATTCTGCACTTTTTATTCTCAAGTCCGGCTTTCGAATCAAAGTTGAAAATCCTTCAGATTCCAAATCAATTATATTCTTCCAGAAGAAACAGTAAAAAAACACTCACCAACTCATCAATTTTCTTCGCCTGCTTCTGAATAATCTCCTTGGCCGTCGTCAATTCCTCATTCAATTTCTCCTTTTCCCTCTCAATTTTCCTCGTCGAATTCCGTTCGTTCAGTGCGATTTGATCGAAACGAGCTATTTTTTCCTGAATTTTGATTTTTATAAATTTCCATTGACAAGAAGCTTACATTCAATTCGGTGATCAGTTTTTGCATATCTCCAATTGTGTTACTTTGTCTTGAAAATCTCGATTTCTCATCTTCCAATGCAGTTTCTAGTCTGGAAATTTTAGTGTTTTGGGGTTTTTTGAATCCTAGAAACTTTGCGATAGTAATCCTCTGTTCGTTCGTCTCATCCAACAACTTCTGAACCTGATTCTGAAGATCATCAATCAGTGACGTCTTCTCCAGAATCTCTTTCTCCATATTTGAATAATGAGTGTCTTGGCGGTTTTGGGATTCTTTGAGCTA</canonical>
            <polymorphic>TCATCAGCAAAGTTTTAATCTAATTCTAACAAGCTTTTTTCAACTTTATAATACTTGTCGTATTATATCTTCGTTCCTGTTAAAGATATCAAAATCGGTCAACAGAAATATTTACTAGTATTTTATCAATTTGATACTTTTCACAGGAACCGAGATAAATATGGCCTAATTGTAAGTTGAAAGGCCCTCATGTTGCAAACTCCAAGGTTTTTTTTGCTGTTTTGAGTAGTTTTAAAGTAAAGGTCATTTTGAAAATAATGTAATTCTAATTGAATTTTCAAACTTCAAAAATTCTCACGAAAATTAAATATTCTAGTCTTTGATTTGCAGCAAACTTTTACGGATTTCAGAAGTTGCGAAGCTCAAAAAAGCGAAAAAATACTGTAGCAGTTCTATTATGTGTAGTTCTTTTCGTCACAGTTATATTCTGCACTTTTTATTCTCAAGTCCGGCTTTCGAATCAAAGTTGAAAATCCTTCAGATTCCAAATCAATTATATYCTTCCAGAAGAAACAGTAAAAAAACACTCACCAACTCATCAATTTTCTTCGCCTGCTTCTGAATAATCTCCTTGGCCGTCGTCAATTCCTCATTCAATTTCTCCTTTTCCCTCTCAATTTTCCTCGTCGAATTCCGTTCGTTCAGTGCGATTTGATCGAAACGAGCTATTTTTTCCTGAATTTTGATTTTTATAAATTTCCATTGACAAGAAGCTTACATTCAATTCGGTGATCAGTTTTTGCATATCTCCAATTGTGTTACTTTGTCTTGAAAATCTCGATTTCTCATCTTCCAATGCAGTTTCTAGTCTGGAAATTTTAGTGTTTTGGGGTTTTTTGAATCCTAGAAACTTTGCGATAGTAATCCTCTGTTCGTTCGTCTCATCCAACAACTTCTGAACCTGATTCTGAAGATCATCAATCAGTGACGTCTTCTCCAGAATCTCTTTCTCCATATTTGAATAATGAGTGTCTTGGCGGTTTTGGGATTCTTTGAGCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTTTTACGGATTTCAGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>GCCAAGGAGATTATTCAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AACTTTTACGGATTTCAGAAGTTGCGAAGCTCAAAAAAGCGAAAAAATACTGTAGCAGTTCTATTATGTGTAGTTCTTTTCGTCACAGTTATATTCTGCACTTTTTATTCTCAAGTCCGGCTTTCGAATCAAAGTTGAAAATCCTTCAGATTCCAAATCAATTATATTCTTCCAGAAGAAACAGTAAAAAAACACTCACCAACTCATCAATTTTCTTCGCCTGCTTCTGAATAATCTCCTTGGC</canonical_amplicon>
		<polymorphic_amplicon>AACTTTTACGGATTTCAGAAGTTGCGAAGCTCAAAAAAGCGAAAAAATACTGTAGCAGTTCTATTATGTGTAGTTCTTTTCGTCACAGTTATATTCTGCACTTTTTATTCTCAAGTCCGGCTTTCGAATCAAAGTTGAAAATCCTTCAGATTCCAAATCAATTATATYCTTCCAGAAGAAACAGTAAAAAAACACTCACCAACTCATCAATTTTCTTCGCCTGCTTCTGAATAATCTCCTTGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18393</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>198265</contig_pos>
        <strand>+</strand>
        <context>CTTCAGATTC[C/T]AAATCAATTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTATTCTCAAGTCCGGCTTTCGAATCAAAGTTGAAAATCCTTCAGATTC</left_flank>
        <right_flank>AAATCAATTATATTCTTCCAGAAGAAACAGTAAAAAAACACTCACCAACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTTCAAAAGTTCATCAGCAAAGTTTTAATCTAATTCTAACAAGCTTTTTTCAACTTTATAATACTTGTCGTATTATATCTTCGTTCCTGTTAAAGATATCAAAATCGGTCAACAGAAATATTTACTAGTATTTTATCAATTTGATACTTTTCACAGGAACCGAGATAAATATGGCCTAATTGTAAGTTGAAAGGCCCTCATGTTGCAAACTCCAAGGTTTTTTTTGCTGTTTTGAGTAGTTTTAAAGTAAAGGTCATTTTGAAAATAATGTAATTCTAATTGAATTTTCAAACTTCAAAAATTCTCACGAAAATTAAATATTCTAGTCTTTGATTTGCAGCAAACTTTTACGGATTTCAGAAGTTGCGAAGCTCAAAAAAGCGAAAAAATACTGTAGCAGTTCTATTATGTGTAGTTCTTTTCGTCACAGTTATATTCTGCACTTTTTATTCTCAAGTCCGGCTTTCGAATCAAAGTTGAAAATCCTTCAGATTCCAAATCAATTATATTCTTCCAGAAGAAACAGTAAAAAAACACTCACCAACTCATCAATTTTCTTCGCCTGCTTCTGAATAATCTCCTTGGCCGTCGTCAATTCCTCATTCAATTTCTCCTTTTCCCTCTCAATTTTCCTCGTCGAATTCCGTTCGTTCAGTGCGATTTGATCGAAACGAGCTATTTTTTCCTGAATTTTGATTTTTATAAATTTCCATTGACAAGAAGCTTACATTCAATTCGGTGATCAGTTTTTGCATATCTCCAATTGTGTTACTTTGTCTTGAAAATCTCGATTTCTCATCTTCCAATGCAGTTTCTAGTCTGGAAATTTTAGTGTTTTGGGGTTTTTTGAATCCTAGAAACTTTGCGATAGTAATCCTCTGTTCGTTCGTCTCATCCAACAACTTCTGAACCTGATTCTGAAGATCATCAATCAGTGACGTCTTCTCCAGAATCTCTTTCTCCATATTTGAATAATGAGTGTCTTGGCGGTTTTGG</canonical>
            <polymorphic>AAATTTTCAAAAGTTCATCAGCAAAGTTTTAATCTAATTCTAACAAGCTTTTTTCAACTTTATAATACTTGTCGTATTATATCTTCGTTCCTGTTAAAGATATCAAAATCGGTCAACAGAAATATTTACTAGTATTTTATCAATTTGATACTTTTCACAGGAACCGAGATAAATATGGCCTAATTGTAAGTTGAAAGGCCCTCATGTTGCAAACTCCAAGGTTTTTTTTGCTGTTTTGAGTAGTTTTAAAGTAAAGGTCATTTTGAAAATAATGTAATTCTAATTGAATTTTCAAACTTCAAAAATTCTCACGAAAATTAAATATTCTAGTCTTTGATTTGCAGCAAACTTTTACGGATTTCAGAAGTTGCGAAGCTCAAAAAAGCGAAAAAATACTGTAGCAGTTCTATTATGTGTAGTTCTTTTCGTCACAGTTATATTCTGCACTTTTTATTCTCAAGTCCGGCTTTCGAATCAAAGTTGAAAATCCTTCAGATTCYAAATCAATTATATTCTTCCAGAAGAAACAGTAAAAAAACACTCACCAACTCATCAATTTTCTTCGCCTGCTTCTGAATAATCTCCTTGGCCGTCGTCAATTCCTCATTCAATTTCTCCTTTTCCCTCTCAATTTTCCTCGTCGAATTCCGTTCGTTCAGTGCGATTTGATCGAAACGAGCTATTTTTTCCTGAATTTTGATTTTTATAAATTTCCATTGACAAGAAGCTTACATTCAATTCGGTGATCAGTTTTTGCATATCTCCAATTGTGTTACTTTGTCTTGAAAATCTCGATTTCTCATCTTCCAATGCAGTTTCTAGTCTGGAAATTTTAGTGTTTTGGGGTTTTTTGAATCCTAGAAACTTTGCGATAGTAATCCTCTGTTCGTTCGTCTCATCCAACAACTTCTGAACCTGATTCTGAAGATCATCAATCAGTGACGTCTTCTCCAGAATCTCTTTCTCCATATTTGAATAATGAGTGTCTTGGCGGTTTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTTTTACGGATTTCAGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>GCCAAGGAGATTATTCAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AACTTTTACGGATTTCAGAAGTTGCGAAGCTCAAAAAAGCGAAAAAATACTGTAGCAGTTCTATTATGTGTAGTTCTTTTCGTCACAGTTATATTCTGCACTTTTTATTCTCAAGTCCGGCTTTCGAATCAAAGTTGAAAATCCTTCAGATTCCAAATCAATTATATTCTTCCAGAAGAAACAGTAAAAAAACACTCACCAACTCATCAATTTTCTTCGCCTGCTTCTGAATAATCTCCTTGGC</canonical_amplicon>
		<polymorphic_amplicon>AACTTTTACGGATTTCAGAAGTTGCGAAGCTCAAAAAAGCGAAAAAATACTGTAGCAGTTCTATTATGTGTAGTTCTTTTCGTCACAGTTATATTCTGCACTTTTTATTCTCAAGTCCGGCTTTCGAATCAAAGTTGAAAATCCTTCAGATTCYAAATCAATTATATTCTTCCAGAAGAAACAGTAAAAAAACACTCACCAACTCATCAATTTTCTTCGCCTGCTTCTGAATAATCTCCTTGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18394</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>198042</contig_pos>
        <strand>+</strand>
        <context>AAATAATGTA[A/T]TTYTAATTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGCTGTTTTGAGTAGTTTTAAAGTAAAGGTCATTTTGAAAATAATGTA</left_flank>
        <right_flank>TTCTAATTGAATTTTCAAACTTCAAAAATTCTCACGAAAATTAAATATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCTTATGACTATCCTTTAATTCTTTCACACAATCAGCCATCATTGCATCTTTATCCTCTAGTTTTCTCTCCAAACGATTCACTTCGTTTCCACGTTTTCGGCATTCGTCTTTCTGGAAAACATTAGTACTGTTTTTAATATCCCATATAAGATGTCATAAACGTTTGGTATAATTGTATAGATTTTGAATTTTCTGTTTAAAATCAAATACAGCATGGATGAAATTTTCAAAAGTTCATCAGCAAAGTTTTAATCTAATTCTAACAAGCTTTTTTCAACTTTATAATACTTGTCGTATTATATCTTCGTTCCTGTTAAAGATATCAAAATCGGTCAACAGAAATATTTACTAGTATTTTATCAATTTGATACTTTTCACAGGAACCGAGATAAATATGGCCTAATTGTAAGTTGAAAGGCCCTCATGTTGCAAACTCCAAGGTTTTTTTTGCTGTTTTGAGTAGTTTTAAAGTAAAGGTCATTTTGAAAATAATGTAATTCTAATTGAATTTTCAAACTTCAAAAATTCTCACGAAAATTAAATATTCTAGTCTTTGATTTGCAGCAAACTTTTACGGATTTCAGAAGTTGCGAAGCTCAAAAAAGCGAAAAAATACTGTAGCAGTTCTATTATGTGTAGTTCTTTTCGTCACAGTTATATTCTGCACTTTTTATTCTCAAGTCCGGCTTTCGAATCAAAGTTGAAAATCCTTCAGATTCCAAATCAATTATATTCTTCCAGAAGAAACAGTAAAAAAACACTCACCAACTCATCAATTTTCTTCGCCTGCTTCTGAATAATCTCCTTGGCCGTCGTCAATTCCTCATTCAATTTCTCCTTTTCCCTCTCAATTTTCCTCGTCGAATTCCGTTCGTTCAGTGCGATTTGATCGAAACGAGCTATTTTTTCCTGAATTTTGATTTTTATAAATTTCCATTGACAAGAAGCTTACATTCAATTCGGTGATCAGTTTTTGCATATCTCCAATTGTGTTACT</canonical>
            <polymorphic>TTCCTTATGACTATCCTTTAATTCTTTCACACAATCAGCCATCATTGCATCTTTATCCTCTAGTTTTCTCTCCAAACGATTCACTTCGTTTCCACGTTTTCGGCATTCGTCTTTCTGGAAAACATTAGTACTGTTTTTAATATCCCATATAAGATGTCATAAACGTTTGGTATAATTGTATAGATTTTGAATTTTCTGTTTAAAATCAAATACAGCATGGATGAAATTTTCAAAAGTTCATCAGCAAAGTTTTAATCTAATTCTAACAAGCTTTTTTCAACTTTATAATACTTGTCGTATTATATCTTCGTTCCTGTTAAAGATATCAAAATCGGTCAACAGAAATATTTACTAGTATTTTATCAATTTGATACTTTTCACAGGAACCGAGATAAATATGGCCTAATTGTAAGTTGAAAGGCCCTCATGTTGCAAACTCCAAGGTTTTTTTTGCTGTTTTGAGTAGTTTTAAAGTAAAGGTCATTTTGAAAATAATGTAWTTCTAATTGAATTTTCAAACTTCAAAAATTCTCACGAAAATTAAATATTCTAGTCTTTGATTTGCAGCAAACTTTTACGGATTTCAGAAGTTGCGAAGCTCAAAAAAGCGAAAAAATACTGTAGCAGTTCTATTATGTGTAGTTCTTTTCGTCACAGTTATATTCTGCACTTTTTATTCTCAAGTCCGGCTTTCGAATCAAAGTTGAAAATCCTTCAGATTCCAAATCAATTATATTCTTCCAGAAGAAACAGTAAAAAAACACTCACCAACTCATCAATTTTCTTCGCCTGCTTCTGAATAATCTCCTTGGCCGTCGTCAATTCCTCATTCAATTTCTCCTTTTCCCTCTCAATTTTCCTCGTCGAATTCCGTTCGTTCAGTGCGATTTGATCGAAACGAGCTATTTTTTCCTGAATTTTGATTTTTATAAATTTCCATTGACAAGAAGCTTACATTCAATTCGGTGATCAGTTTTTGCATATCTCCAATTGTGTTACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>190 154 106 94 49 49 43 40 35 34 29 28 20 19 17 16 16 14 12 12 12 6 5</canonical_bands>
                <polymorphic_bands>190 154 106 100 49 49 43 40 35 34 29 28 20 19 17 16 16 14 12 12 12 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGCTGTTTTGAGTAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTGAGAATAAAAAGTGCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGCTGTTTTGAGTAGTTTTAAAGTAAAGGTCATTTTGAAAATAATGTAATTCTAATTGAATTTTCAAACTTCAAAAATTCTCACGAAAATTAAATATTCTAGTCTTTGATTTGCAGCAAACTTTTACGGATTTCAGAAGTTGCGAAGCTCAAAAAAGCGAAAAAATACTGTAGCAGTTCTATTATGTGTAGTTCTTTTCGTCACAGTTATATTCTGCACTTTTTATTCTCAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGCTGTTTTGAGTAGTTTTAAAGTAAAGGTCATTTTGAAAATAATGTAWTTCTAATTGAATTTTCAAACTTCAAAAATTCTCACGAAAATTAAATATTCTAGTCTTTGATTTGCAGCAAACTTTTACGGATTTCAGAAGTTGCGAAGCTCAAAAAAGCGAAAAAATACTGTAGCAGTTCTATTATGTGTAGTTCTTTTCGTCACAGTTATATTCTGCACTTTTTATTCTCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18395</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>283722</contig_pos>
        <strand></strand>
        <context>GGKAAAAAAA[C/A]WWTTTTTCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAA</left_flank>
        <right_flank>AATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTCTATTTTTTATAGGGTCACGTCAATTTATATTACGGGTTTATTCAGGGAGTCGGCAAAAAAGGAAAAAAAAACTCCGCCAAAACTCGGAGAGTGTTCGAATCTGGCTGAAACTTTGGGGAAAAATGGAGAAAACNNNNNNNNNNACAAATTTTCAAAGTTGATATTTTGACCCCAAACTTTGGCAAGTTTTATCCAGTTTTCCCCAAAGTTTCAGCCAGATTCGAACACTCTCCGAGTTTTGGCGGAGTTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTAAATTTTCAAGATTTTCAAAAATGTGTGGACAAATCCACAGAGAAAGAGACGCAACTTCATTCATTTATTGTAAGAATGATTATCAAAACTATCGATTGATTGATTTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAAAGGGAGGG</canonical>
            <polymorphic>CTCTCTATTTTTTATAGGGTCACGTCAATTTATATTACGGGTTTATTCAGGGAGTCGGCAAAAAAGGAAAAAAAAACTCCGCCAAAACTCGGAGAGTGTTCGAATCTGGCTGAAACTTTGGGGAAAAATGGAGAAAACNNNNNNNNNNACAAATTTTCAAAGTTGATATTTTGACCCCAAACTTTGGCAAGTTTTATCCAGTTTTCCCCAAAGTTTCAGCCAGATTCGAACACTCTCCGAGTTTTGGCGGAGTTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTAAATTTTCAAGATTTTCAAAAATGTGTGGACAAATCCACAGAGAAAGAGACGCAACTTCATTCATTTATTGTAAGAATGATTATCAAAACTATCGATTGATTGATTTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAAMAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAAAGGGAGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCGCATTTTTAGAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGATATTTTGTTTGGTTATTACAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAAMAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18396</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>283723</contig_pos>
        <strand></strand>
        <context>GKAAAAAAAM[A/T]WTTTTTCTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAAC</left_flank>
        <right_flank>ATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCTATTTTTTATAGGGTCACGTCAATTTATATTACGGGTTTATTCAGGGAGTCGGCAAAAAAGGAAAAAAAAACTCCGCCAAAACTCGGAGAGTGTTCGAATCTGGCTGAAACTTTGGGGAAAAATGGAGAAAACNNNNNNNNNNACAAATTTTCAAAGTTGATATTTTGACCCCAAACTTTGGCAAGTTTTATCCAGTTTTCCCCAAAGTTTCAGCCAGATTCGAACACTCTCCGAGTTTTGGCGGAGTTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTAAATTTTCAAGATTTTCAAAAATGTGTGGACAAATCCACAGAGAAAGAGACGCAACTTCATTCATTTATTGTAAGAATGATTATCAAAACTATCGATTGATTGATTTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAAAGGGAGGGG</canonical>
            <polymorphic>TCTCTATTTTTTATAGGGTCACGTCAATTTATATTACGGGTTTATTCAGGGAGTCGGCAAAAAAGGAAAAAAAAACTCCGCCAAAACTCGGAGAGTGTTCGAATCTGGCTGAAACTTTGGGGAAAAATGGAGAAAACNNNNNNNNNNACAAATTTTCAAAGTTGATATTTTGACCCCAAACTTTGGCAAGTTTTATCCAGTTTTCCCCAAAGTTTCAGCCAGATTCGAACACTCTCCGAGTTTTGGCGGAGTTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTAAATTTTCAAGATTTTCAAAAATGTGTGGACAAATCCACAGAGAAAGAGACGCAACTTCATTCATTTATTGTAAGAATGATTATCAAAACTATCGATTGATTGATTTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACWATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAAAGGGAGGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>199 147 145 144 142 125 48 25 15 10</canonical_bands>
                <polymorphic_bands>199 195 145 144 142 125 25 15 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCGCATTTTTAGAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGATATTTTGTTTGGTTATTACAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACWATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18397</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>283724</contig_pos>
        <strand></strand>
        <context>KAAAAAAAMW[A/T]TTTTTCTAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACA</left_flank>
        <right_flank>TTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTAT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTATTTTTTATAGGGTCACGTCAATTTATATTACGGGTTTATTCAGGGAGTCGGCAAAAAAGGAAAAAAAAACTCCGCCAAAACTCGGAGAGTGTTCGAATCTGGCTGAAACTTTGGGGAAAAATGGAGAAAACNNNNNNNNNNACAAATTTTCAAAGTTGATATTTTGACCCCAAACTTTGGCAAGTTTTATCCAGTTTTCCCCAAAGTTTCAGCCAGATTCGAACACTCTCCGAGTTTTGGCGGAGTTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTAAATTTTCAAGATTTTCAAAAATGTGTGGACAAATCCACAGAGAAAGAGACGCAACTTCATTCATTTATTGTAAGAATGATTATCAAAACTATCGATTGATTGATTTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAAAGGGAGGGGG</canonical>
            <polymorphic>CTCTATTTTTTATAGGGTCACGTCAATTTATATTACGGGTTTATTCAGGGAGTCGGCAAAAAAGGAAAAAAAAACTCCGCCAAAACTCGGAGAGTGTTCGAATCTGGCTGAAACTTTGGGGAAAAATGGAGAAAACNNNNNNNNNNACAAATTTTCAAAGTTGATATTTTGACCCCAAACTTTGGCAAGTTTTATCCAGTTTTCCCCAAAGTTTCAGCCAGATTCGAACACTCTCCGAGTTTTGGCGGAGTTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTAAATTTTCAAGATTTTCAAAAATGTGTGGACAAATCCACAGAGAAAGAGACGCAACTTCATTCATTTATTGTAAGAATGATTATCAAAACTATCGATTGATTGATTTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAWTTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAAAGGGAGGGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>199 147 146 144 142 125 48 24 15 10</canonical_bands>
                <polymorphic_bands>199 195 146 144 142 125 24 15 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCGCATTTTTAGAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGATATTTTGTTTGGTTATTACAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAWTTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18398</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>283760</contig_pos>
        <strand></strand>
        <context>AGCTACACGG[G/T]CKCATAAATG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGG</left_flank>
        <right_flank>CTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGTTTATTCAGGGAGTCGGCAAAAAAGGAAAAAAAAACTCCGCCAAAACTCGGAGAGTGTTCGAATCTGGCTGAAACTTTGGGGAAAAATGGAGAAAACNNNNNNNNNNACAAATTTTCAAAGTTGATATTTTGACCCCAAACTTTGGCAAGTTTTATCCAGTTTTCCCCAAAGTTTCAGCCAGATTCGAACACTCTCCGAGTTTTGGCGGAGTTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTAAATTTTCAAGATTTTCAAAAATGTGTGGACAAATCCACAGAGAAAGAGACGCAACTTCATTCATTTATTGTAAGAATGATTATCAAAACTATCGATTGATTGATTTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAAAGGGAGGGGGAGATATGTTTTGAAAAGGCCTGCCACGAATATTTTT</canonical>
            <polymorphic>GGGTTTATTCAGGGAGTCGGCAAAAAAGGAAAAAAAAACTCCGCCAAAACTCGGAGAGTGTTCGAATCTGGCTGAAACTTTGGGGAAAAATGGAGAAAACNNNNNNNNNNACAAATTTTCAAAGTTGATATTTTGACCCCAAACTTTGGCAAGTTTTATCCAGTTTTCCCCAAAGTTTCAGCCAGATTCGAACACTCTCCGAGTTTTGGCGGAGTTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTAAATTTTCAAGATTTTCAAAAATGTGTGGACAAATCCACAGAGAAAGAGACGCAACTTCATTCATTTATTGTAAGAATGATTATCAAAACTATCGATTGATTGATTTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGKCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAAAGGGAGGGGGAGATATGTTTTGAAAAGGCCTGCCACGAATATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>502 463 35</canonical_bands>
                <polymorphic_bands>537 463</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>305 242 240 110 71 18 9 5</canonical_bands>
                <polymorphic_bands>305 249 242 110 71 18 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCGCATTTTTAGAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGATATTTTGTTTGGTTATTACAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGKCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18399</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>283762</contig_pos>
        <strand>+</strand>
        <context>CTACACGGKC[G/T]CATAAATGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGC</left_flank>
        <right_flank>CATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTATTCAGGGAGTCGGCAAAAAAGGAAAAAAAAACTCCGCCAAAACTCGGAGAGTGTTCGAATCTGGCTGAAACTTTGGGGAAAAATGGAGAAAACNNNNNNNNNNACAAATTTTCAAAGTTGATATTTTGACCCCAAACTTTGGCAAGTTTTATCCAGTTTTCCCCAAAGTTTCAGCCAGATTCGAACACTCTCCGAGTTTTGGCGGAGTTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTAAATTTTCAAGATTTTCAAAAATGTGTGGACAAATCCACAGAGAAAGAGACGCAACTTCATTCATTTATTGTAAGAATGATTATCAAAACTATCGATTGATTGATTTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAAAGGGAGGGGGAGATATGTTTTGAAAAGGCCTGCCACGAATATTTTTCT</canonical>
            <polymorphic>GTTTATTCAGGGAGTCGGCAAAAAAGGAAAAAAAAACTCCGCCAAAACTCGGAGAGTGTTCGAATCTGGCTGAAACTTTGGGGAAAAATGGAGAAAACNNNNNNNNNNACAAATTTTCAAAGTTGATATTTTGACCCCAAACTTTGGCAAGTTTTATCCAGTTTTCCCCAAAGTTTCAGCCAGATTCGAACACTCTCCGAGTTTTGGCGGAGTTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTAAATTTTCAAGATTTTCAAAAATGTGTGGACAAATCCACAGAGAAAGAGACGCAACTTCATTCATTTATTGTAAGAATGATTATCAAAACTATCGATTGATTGATTTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCKCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAAAGGGAGGGGGAGATATGTTTTGAAAAGGCCTGCCACGAATATTTTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>500 465 35</canonical_bands>
                <polymorphic_bands>535 465</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>305 242 240 110 69 20 9 5</canonical_bands>
                <polymorphic_bands>305 249 242 110 69 20 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCGCATTTTTAGAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGATATTTTGTTTGGTTATTACAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCKCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18400</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>283801</contig_pos>
        <strand>+</strand>
        <context>ATGTGCACTG[A/C]CACACAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTG</left_flank>
        <right_flank>CACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCCAAAACTCGGAGAGTGTTCGAATCTGGCTGAAACTTTGGGGAAAAATGGAGAAAACNNNNNNNNNNACAAATTTTCAAAGTTGATATTTTGACCCCAAACTTTGGCAAGTTTTATCCAGTTTTCCCCAAAGTTTCAGCCAGATTCGAACACTCTCCGAGTTTTGGCGGAGTTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTAAATTTTCAAGATTTTCAAAAATGTGTGGACAAATCCACAGAGAAAGAGACGCAACTTCATTCATTTATTGTAAGAATGATTATCAAAACTATCGATTGATTGATTTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAAAGGGAGGGGGAGATATGTTTTGAAAAGGCCTGCCACGAATATTTTTCTTTGTGATTCAAAAAAAGTACAAAAGAGAATATATAGATG</canonical>
            <polymorphic>CGCCAAAACTCGGAGAGTGTTCGAATCTGGCTGAAACTTTGGGGAAAAATGGAGAAAACNNNNNNNNNNACAAATTTTCAAAGTTGATATTTTGACCCCAAACTTTGGCAAGTTTTATCCAGTTTTCCCCAAAGTTTCAGCCAGATTCGAACACTCTCCGAGTTTTGGCGGAGTTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTAAATTTTCAAGATTTTCAAAAATGTGTGGACAAATCCACAGAGAAAGAGACGCAACTTCATTCATTTATTGTAAGAATGATTATCAAAACTATCGATTGATTGATTTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGMCACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAAAGGGAGGGGGAGATATGTTTTGAAAAGGCCTGCCACGAATATTTTTCTTTGTGATTCAAAAAAAGTACAAAAGAGAATATATAGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCGCATTTTTAGAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGATATTTTGTTTGGTTATTACAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGMCACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18401</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>283905</contig_pos>
        <strand>+</strand>
        <context>CAGAAGTTGT[A/G]GGAAGGAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGT</left_flank>
        <right_flank>GGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGCAAGTTTTATCCAGTTTTCCCCAAAGTTTCAGCCAGATTCGAACACTCTCCGAGTTTTGGCGGAGTTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTAAATTTTCAAGATTTTCAAAAATGTGTGGACAAATCCACAGAGAAAGAGACGCAACTTCATTCATTTATTGTAAGAATGATTATCAAAACTATCGATTGATTGATTTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAAAGGGAGGGGGAGATATGTTTTGAAAAGGCCTGCCACGAATATTTTTCTTTGTGATTCAAAAAAAGTACAAAAGAGAATATATAGATGTACAAAAAGAGTAGAGAAAAAGAGCGCAAACACAGAAATGATGACGCGACAGGGGCCGTTTTAAAGGTGAATTGAGAGAGTATGAAGAGATGAGAGAATTAGAG</canonical>
            <polymorphic>TTGGCAAGTTTTATCCAGTTTTCCCCAAAGTTTCAGCCAGATTCGAACACTCTCCGAGTTTTGGCGGAGTTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTAAATTTTCAAGATTTTCAAAAATGTGTGGACAAATCCACAGAGAAAGAGACGCAACTTCATTCATTTATTGTAAGAATGATTATCAAAACTATCGATTGATTGATTTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTRGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAAAGGGAGGGGGAGATATGTTTTGAAAAGGCCTGCCACGAATATTTTTCTTTGTGATTCAAAAAAAGTACAAAAGAGAATATATAGATGTACAAAAAGAGTAGAGAAAAAGAGCGCAAACACAGAAATGATGACGCGACAGGGGCCGTTTTAAAGGTGAATTGAGAGAGTATGAAGAGATGAGAGAATTAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>135 90 88 73 67 66 49 45 42 37 35 30 29 26 25 25 25 20 19 18 14 13 10 7 6 2 2 2</canonical_bands>
                <polymorphic_bands>135 90 88 73 67 66 49 45 42 39 37 35 30 29 25 25 25 20 19 18 14 10 7 6 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCCGTTTTGAATAGTGTAATA</pcr_primer_p1>
		<pcr_primer_p2>AAAATTTCAGATTATCCGAGTG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTRGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18402</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>283922</contig_pos>
        <strand>+</strand>
        <context>AAATGTGTCT[A/G]AAAATGAAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCT</left_flank>
        <right_flank>AAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTCCCCAAAGTTTCAGCCAGATTCGAACACTCTCCGAGTTTTGGCGGAGTTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTAAATTTTCAAGATTTTCAAAAATGTGTGGACAAATCCACAGAGAAAGAGACGCAACTTCATTCATTTATTGTAAGAATGATTATCAAAACTATCGATTGATTGATTTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAAAGGGAGGGGGAGATATGTTTTGAAAAGGCCTGCCACGAATATTTTTCTTTGTGATTCAAAAAAAGTACAAAAGAGAATATATAGATGTACAAAAAGAGTAGAGAAAAAGAGCGCAAACACAGAAATGATGACGCGACAGGGGCCGTTTTAAAGGTGAATTGAGAGAGTATGAAGAGATGAGAGAATTAGAGAAGGAAGACTCGTGCCG</canonical>
            <polymorphic>GTTTTCCCCAAAGTTTCAGCCAGATTCGAACACTCTCCGAGTTTTGGCGGAGTTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTAAATTTTCAAGATTTTCAAAAATGTGTGGACAAATCCACAGAGAAAGAGACGCAACTTCATTCATTTATTGTAAGAATGATTATCAAAACTATCGATTGATTGATTTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTRAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAAAGGGAGGGGGAGATATGTTTTGAAAAGGCCTGCCACGAATATTTTTCTTTGTGATTCAAAAAAAGTACAAAAGAGAATATATAGATGTACAAAAAGAGTAGAGAAAAAGAGCGCAAACACAGAAATGATGACGCGACAGGGGCCGTTTTAAAGGTGAATTGAGAGAGTATGAAGAGATGAGAGAATTAGAGAAGGAAGACTCGTGCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>461 356 137 38 8</canonical_bands>
                <polymorphic_bands>598 356 38 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCCGTTTTGAATAGTGTAATA</pcr_primer_p1>
		<pcr_primer_p2>AAAATTTCAGATTATCCGAGTG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTRAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18403</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>283940</contig_pos>
        <strand>+</strand>
        <context>AACTTCTCAC[A/G]TTTCTCRAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCAC</left_flank>
        <right_flank>TTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCAGATTCGAACACTCTCCGAGTTTTGGCGGAGTTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTAAATTTTCAAGATTTTCAAAAATGTGTGGACAAATCCACAGAGAAAGAGACGCAACTTCATTCATTTATTGTAAGAATGATTATCAAAACTATCGATTGATTGATTTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAAAGGGAGGGGGAGATATGTTTTGAAAAGGCCTGCCACGAATATTTTTCTTTGTGATTCAAAAAAAGTACAAAAGAGAATATATAGATGTACAAAAAGAGTAGAGAAAAAGAGCGCAAACACAGAAATGATGACGCGACAGGGGCCGTTTTAAAGGTGAATTGAGAGAGTATGAAGAGATGAGAGAATTAGAGAAGGAAGACTCGTGCCGGTGCTAATGGTGATGAGA</canonical>
            <polymorphic>GCCAGATTCGAACACTCTCCGAGTTTTGGCGGAGTTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTAAATTTTCAAGATTTTCAAAAATGTGTGGACAAATCCACAGAGAAAGAGACGCAACTTCATTCATTTATTGTAAGAATGATTATCAAAACTATCGATTGATTGATTTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACRTTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAAAGGGAGGGGGAGATATGTTTTGAAAAGGCCTGCCACGAATATTTTTCTTTGTGATTCAAAAAAAGTACAAAAGAGAATATATAGATGTACAAAAAGAGTAGAGAAAAAGAGCGCAAACACAGAAATGATGACGCGACAGGGGCCGTTTTAAAGGTGAATTGAGAGAGTATGAAGAGATGAGAGAATTAGAGAAGGAAGACTCGTGCCGGTGCTAATGGTGATGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCCGTTTTGAATAGTGTAATA</pcr_primer_p1>
		<pcr_primer_p2>AAAATTTCAGATTATCCGAGTG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACRTTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18404</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>283947</contig_pos>
        <strand>+</strand>
        <context>CACRTTTCTC[A/G]AAATCTCTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTC</left_flank>
        <right_flank>AAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGAACACTCTCCGAGTTTTGGCGGAGTTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTAAATTTTCAAGATTTTCAAAAATGTGTGGACAAATCCACAGAGAAAGAGACGCAACTTCATTCATTTATTGTAAGAATGATTATCAAAACTATCGATTGATTGATTTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAAAGGGAGGGGGAGATATGTTTTGAAAAGGCCTGCCACGAATATTTTTCTTTGTGATTCAAAAAAAGTACAAAAGAGAATATATAGATGTACAAAAAGAGTAGAGAAAAAGAGCGCAAACACAGAAATGATGACGCGACAGGGGCCGTTTTAAAGGTGAATTGAGAGAGTATGAAGAGATGAGAGAATTAGAGAAGGAAGACTCGTGCCGGTGCTAATGGTGATGAGAGTATTCG</canonical>
            <polymorphic>TCGAACACTCTCCGAGTTTTGGCGGAGTTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTAAATTTTCAAGATTTTCAAAAATGTGTGGACAAATCCACAGAGAAAGAGACGCAACTTCATTCATTTATTGTAAGAATGATTATCAAAACTATCGATTGATTGATTTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCRAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAAAGGGAGGGGGAGATATGTTTTGAAAAGGCCTGCCACGAATATTTTTCTTTGTGATTCAAAAAAAGTACAAAAGAGAATATATAGATGTACAAAAAGAGTAGAGAAAAAGAGCGCAAACACAGAAATGATGACGCGACAGGGGCCGTTTTAAAGGTGAATTGAGAGAGTATGAAGAGATGAGAGAATTAGAGAAGGAAGACTCGTGCCGGTGCTAATGGTGATGAGAGTATTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCCGTTTTGAATAGTGTAATA</pcr_primer_p1>
		<pcr_primer_p2>AAAATTTCAGATTATCCGAGTG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCRAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18405</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>284084</contig_pos>
        <strand>+</strand>
        <context>TCGAAAATTG[A/G]AGTTCAATRG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTG</left_flank>
        <right_flank>AGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTAAGAATGATTATCAAAACTATCGATTGATTGATTTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAAAGGGAGGGGGAGATATGTTTTGAAAAGGCCTGCCACGAATATTTTTCTTTGTGATTCAAAAAAAGTACAAAAGAGAATATATAGATGTACAAAAAGAGTAGAGAAAAAGAGCGCAAACACAGAAATGATGACGCGACAGGGGCCGTTTTAAAGGTGAATTGAGAGAGTATGAAGAGATGAGAGAATTAGAGAAGGAAGACTCGTGCCGGTGCTAATGGTGATGAGAGTATTCGGAAGAAGGCCATTTTCAATCGGTTTTAGGAAATTCGAGTATAAAAGAAGGACTTTTTAAGTGGGTCACTAATAAGGAAAGTTTAGTCTTTGACTGTCTTGAAGGTGTGTATGTATTTTTGCTCCTTACACTTCCACT</canonical>
            <polymorphic>TTGTAAGAATGATTATCAAAACTATCGATTGATTGATTTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGRAGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAAAGGGAGGGGGAGATATGTTTTGAAAAGGCCTGCCACGAATATTTTTCTTTGTGATTCAAAAAAAGTACAAAAGAGAATATATAGATGTACAAAAAGAGTAGAGAAAAAGAGCGCAAACACAGAAATGATGACGCGACAGGGGCCGTTTTAAAGGTGAATTGAGAGAGTATGAAGAGATGAGAGAATTAGAGAAGGAAGACTCGTGCCGGTGCTAATGGTGATGAGAGTATTCGGAAGAAGGCCATTTTCAATCGGTTTTAGGAAATTCGAGTATAAAAGAAGGACTTTTTAAGTGGGTCACTAATAAGGAAAGTTTAGTCTTTGACTGTCTTGAAGGTGTGTATGTATTTTTGCTCCTTACACTTCCACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCTCTATCTCTCTCACCCTATT</pcr_primer_p1>
		<pcr_primer_p2>TATCTTTGATTCGAAACCTAGTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATA</canonical_amplicon>
		<polymorphic_amplicon>TCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGRAGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18406</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>284093</contig_pos>
        <strand>+</strand>
        <context>GRAGTTCAAT[A/G]GAGCGTACTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAAT</left_flank>
        <right_flank>GAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATTATCAAAACTATCGATTGATTGATTTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAAAGGGAGGGGGAGATATGTTTTGAAAAGGCCTGCCACGAATATTTTTCTTTGTGATTCAAAAAAAGTACAAAAGAGAATATATAGATGTACAAAAAGAGTAGAGAAAAAGAGCGCAAACACAGAAATGATGACGCGACAGGGGCCGTTTTAAAGGTGAATTGAGAGAGTATGAAGAGATGAGAGAATTAGAGAAGGAAGACTCGTGCCGGTGCTAATGGTGATGAGAGTATTCGGAAGAAGGCCATTTTCAATCGGTTTTAGGAAATTCGAGTATAAAAGAAGGACTTTTTAAGTGGGTCACTAATAAGGAAAGTTTAGTCTTTGACTGTCTTGAAGGTGTGTATGTATTTTTGCTCCTTACACTTCCACTATCGTACCC</canonical>
            <polymorphic>TGATTATCAAAACTATCGATTGATTGATTTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAATRGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAAAGGGAGGGGGAGATATGTTTTGAAAAGGCCTGCCACGAATATTTTTCTTTGTGATTCAAAAAAAGTACAAAAGAGAATATATAGATGTACAAAAAGAGTAGAGAAAAAGAGCGCAAACACAGAAATGATGACGCGACAGGGGCCGTTTTAAAGGTGAATTGAGAGAGTATGAAGAGATGAGAGAATTAGAGAAGGAAGACTCGTGCCGGTGCTAATGGTGATGAGAGTATTCGGAAGAAGGCCATTTTCAATCGGTTTTAGGAAATTCGAGTATAAAAGAAGGACTTTTTAAGTGGGTCACTAATAAGGAAAGTTTAGTCTTTGACTGTCTTGAAGGTGTGTATGTATTTTTGCTCCTTACACTTCCACTATCGTACCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCTCTATCTCTCTCACCCTATT</pcr_primer_p1>
		<pcr_primer_p2>TATCTTTGATTCGAAACCTAGTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATA</canonical_amplicon>
		<polymorphic_amplicon>TCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAATRGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18407</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>284151</contig_pos>
        <strand>+</strand>
        <context>TCCACCGTTC[A/G]CTATTATTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTC</left_flank>
        <right_flank>CTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAAAGGGAGGGGGAGATATGTTTTGAAAAGGCCTGCCACGAATATTTTTCTTTGTGATTCAAAAAAAGTACAAAAGAGAATATATAGATGTACAAAAAGAGTAGAGAAAAAGAGCGCAAACACAGAAATGATGACGCGACAGGGGCCGTTTTAAAGGTGAATTGAGAGAGTATGAAGAGATGAGAGAATTAGAGAAGGAAGACTCGTGCCGGTGCTAATGGTGATGAGAGTATTCGGAAGAAGGCCATTTTCAATCGGTTTTAGGAAATTCGAGTATAAAAGAAGGACTTTTTAAGTGGGTCACTAATAAGGAAAGTTTAGTCTTTGACTGTCTTGAAGGTGTGTATGTATTTTTGCTCCTTACACTTCCACTATCGTACCCCTATCCGTCCATGAATGAACATTTGCACCGGCGTAGCTCAGCCAAGTTCAACTTTTCC</canonical>
            <polymorphic>CTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCRCTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAAAGGGAGGGGGAGATATGTTTTGAAAAGGCCTGCCACGAATATTTTTCTTTGTGATTCAAAAAAAGTACAAAAGAGAATATATAGATGTACAAAAAGAGTAGAGAAAAAGAGCGCAAACACAGAAATGATGACGCGACAGGGGCCGTTTTAAAGGTGAATTGAGAGAGTATGAAGAGATGAGAGAATTAGAGAAGGAAGACTCGTGCCGGTGCTAATGGTGATGAGAGTATTCGGAAGAAGGCCATTTTCAATCGGTTTTAGGAAATTCGAGTATAAAAGAAGGACTTTTTAAGTGGGTCACTAATAAGGAAAGTTTAGTCTTTGACTGTCTTGAAGGTGTGTATGTATTTTTGCTCCTTACACTTCCACTATCGTACCCCTATCCGTCCATGAATGAACATTTGCACCGGCGTAGCTCAGCCAAGTTCAACTTTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>90 75 73 67 66 49 45 42 39 38 38 37 31 30 29 26 25 25 25 21 20 19 18 14 13 9 7 6 6 6 5 2 2 2</canonical_bands>
                <polymorphic_bands>90 75 73 67 66 49 45 42 39 38 38 37 32 31 30 29 26 25 25 21 20 19 18 14 13 9 6 6 6 5 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 354 132 12</canonical_bands>
                <polymorphic_bands>856 132 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTACTTGCTGTTTCATTTATTAC</pcr_primer_p1>
		<pcr_primer_p2>CGTCATCATTTCTGTGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAAAGGGAGGGGGAGATATGTTTTGAAAAGGCCTGCCACGAATATTTTTCTTTGTGATTCAAAAAAAGTACAAAAGAGAATATATAGATGTACAAAAAGAGTAGAGAAAAAGAGCGCAAACACAGAAATGATGACG</canonical_amplicon>
		<polymorphic_amplicon>CGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCRCTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAAAGGGAGGGGGAGATATGTTTTGAAAAGGCCTGCCACGAATATTTTTCTTTGTGATTCAAAAAAAGTACAAAAGAGAATATATAGATGTACAAAAAGAGTAGAGAAAAAGAGCGCAAACACAGAAATGATGACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18435</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>357561</contig_pos>
        <strand>+</strand>
        <context>CCTCCTCCAC[A/G]ACCGCTTCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTCCGAATCTCGAAAACGACGGAAGACGTTGTCTGGGTGCCTCCTCCAC</left_flank>
        <right_flank>ACCGCTTCTACAGATTGCTCATCGTTAATCGAGATGGTGTTGATGGACAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGAAAACCCCAACTTGCAAAAATTAGGCCCCTTTTTAAAATGTCTCAAAAATCGAGAAATTCTTGAGAAAATTTTCTAATTTTGAATTAAACAGAAACCGCGCTCTATTGACAAAACGCTCCATACTGTGTCTAGTGGAGCGAAGTTGCACCCCTAGCTTATCAATAAAACACATTTTTACCTTGTTGGCCACCGAAACCGACATCGACCGTCCATAATTAAGACGTCGGGTACCTAGTGGAGTGGTGGATACTGTAGGTGTTGGACGTGTTGGAGCCGAGAAACTCGACGCTCTCTCGTTCCGGACCAACGCATCGTAGAGCTCAACGTCATCGAGAGAGTCGGTCCGTGGCAAGCAGCAGCTCTGGAAAAAAGTCTAAATTTTGAAAAAATCAAAAATTTGGAATCTTTTGAAAAATCTGAAAATCTGAATTTACCTGCGCCGTGCTTCCGAATCTCGAAAACGACGGAAGACGTTGTCTGGGTGCCTCCTCCACAACCGCTTCTACAGATTGCTCATCGTTAATCGAGATGGTGTTGATGGACATTGTCGCCAGATTGATCGAGTGAGCACTTTGGGAGTGGAAGCGAGCTGGAAAAACATGATTTCAGCATGGTGGCCTAATTTTTGATTTTTCTAGGCCACTATGTTATTTGGCCTAGAAATGACCTGGTGTGTTTTCTAGGCCATGTTGAGAAGGTGTCCTAGAAAACTTGACATGCAAAAGTTAGGCTTTTTCTGGGCAATTTTGACAGAATGGCCTAACTTTCTCAACATGATTTTTCTAGGCCACCACGGTTAATGATCTAGAAAAAACACCAGGTGGATATGAGGCTTTTTTTCTAGGTAAATTCCCATGGTGGCCTAAAAAACTCATCTTGGCAAAAGTTAGGCCACCATGGTAAATGGCCTTAAATGAGTTGATATTCATCTGGTGTGTTTTCTAGGCCCCTTAATATGGTGGCCTAACTTTTTCAAGTTGGATTTTTCTAGGCCA</canonical>
            <polymorphic>CTAGAAAACCCCAACTTGCAAAAATTAGGCCCCTTTTTAAAATGTCTCAAAAATCGAGAAATTCTTGAGAAAATTTTCTAATTTTGAATTAAACAGAAACCGCGCTCTATTGACAAAACGCTCCATACTGTGTCTAGTGGAGCGAAGTTGCACCCCTAGCTTATCAATAAAACACATTTTTACCTTGTTGGCCACCGAAACCGACATCGACCGTCCATAATTAAGACGTCGGGTACCTAGTGGAGTGGTGGATACTGTAGGTGTTGGACGTGTTGGAGCCGAGAAACTCGACGCTCTCTCGTTCCGGACCAACGCATCGTAGAGCTCAACGTCATCGAGAGAGTCGGTCCGTGGCAAGCAGCAGCTCTGGAAAAAAGTCTAAATTTTGAAAAAATCAAAAATTTGGAATCTTTTGAAAAATCTGAAAATCTGAATTTACCTGCGCCGTGCTTCCGAATCTCGAAAACGACGGAAGACGTTGTCTGGGTGCCTCCTCCACRACCGCTTCTACAGATTGCTCATCGTTAATCGAGATGGTGTTGATGGACATTGTCGCCAGATTGATCGAGTGAGCACTTTGGGAGTGGAAGCGAGCTGGAAAAACATGATTTCAGCATGGTGGCCTAATTTTTGATTTTTCTAGGCCACTATGTTATTTGGCCTAGAAATGACCTGGTGTGTTTTCTAGGCCATGTTGAGAAGGTGTCCTAGAAAACTTGACATGCAAAAGTTAGGCTTTTTCTGGGCAATTTTGACAGAATGGCCTAACTTTCTCAACATGATTTTTCTAGGCCACCACGGTTAATGATCTAGAAAAAACACCAGGTGGATATGAGGCTTTTTTTCTAGGTAAATTCCCATGGTGGCCTAAAAAACTCATCTTGGCAAAAGTTAGGCCACCATGGTAAATGGCCTTAAATGAGTTGATATTCATCTGGTGTGTTTTCTAGGCCCCTTAATATGGTGGCCTAACTTTTTCAAGTTGGATTTTTCTAGGCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAATCTTTTGAAAAATCTGAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGTGCTCACTCGATCAAT</pcr_primer_p2>
		<pcr_amplicon_size>175</pcr_amplicon_size>
		<canonical_amplicon>GGAATCTTTTGAAAAATCTGAAAATCTGAATTTACCTGCGCCGTGCTTCCGAATCTCGAAAACGACGGAAGACGTTGTCTGGGTGCCTCCTCCACAACCGCTTCTACAGATTGCTCATCGTTAATCGAGATGGTGTTGATGGACATTGTCGCCAGATTGATCGAGTGAGCACTTT</canonical_amplicon>
		<polymorphic_amplicon>GGAATCTTTTGAAAAATCTGAAAATCTGAATTTACCTGCGCCGTGCTTCCGAATCTCGAAAACGACGGAAGACGTTGTCTGGGTGCCTCCTCCACRACCGCTTCTACAGATTGCTCATCGTTAATCGAGATGGTGTTGATGGACATTGTCGCCAGATTGATCGAGTGAGCACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18437</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>377306</contig_pos>
        <strand>+</strand>
        <context>GATAAGAGAA[A/T]CAATTATAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCAGGATAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAA</left_flank>
        <right_flank>CAATTATAGGCAACAGAAGGTAAACAAGGGGCCGCTATCAGCTTATCAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTTTCAAACTGCTTGGAATTTTTTCTGTTCCATAAACATTTTGAATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATTTCAAATTTAACACAGAATTTCACTACTTCCACTTATGTTTCCCCATGTTTTCTGTTTCACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAGGTAAACAAGGGGCCGCTATCAGCTTATCAGTATATCTACGTGTTGAATAACCATGGCGGCGAGGGAACTGGAAATAAAGAGAGGATGTATGTAATTTGTTGTTTGGAGCCCCAACAAATGCGCAAATAATCACCAGGTACCGACCTTCTGATAAGAAAAGTGATAAGGAATAACAGGAAGAGGTACACAACGTTAATGGGTACCGTTATCAGTGTGGTTGTAGGGACCTGCATTTCTGGGATCAATGAATGTATGTAGTGCTAATAGAAAGACGTTAGGGATTCGAATTGGGTATTCAATACCATCAAACTACAAGTGAATATTACCATAAACAGTTAATATCTCAGAACATTGTTGAATCTGAATGTGAATCAGCGACATTTGAGCAAAAATCATCCCTGAGAAGGTGTTATTTTTGTAATTTTGTAATAGACCAAAATTGTGAAACGTTAGAGGTACTGCAAATGTTGCAATAGAACGC</canonical>
            <polymorphic>CTGTTTCAAACTGCTTGGAATTTTTTCTGTTCCATAAACATTTTGAATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATTTCAAATTTAACACAGAATTTCACTACTTCCACTTATGTTTCCCCATGTTTTCTGTTTCACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAWCAATTATAGGCAACAGAAGGTAAACAAGGGGCCGCTATCAGCTTATCAGTATATCTACGTGTTGAATAACCATGGCGGCGAGGGAACTGGAAATAAAGAGAGGATGTATGTAATTTGTTGTTTGGAGCCCCAACAAATGCGCAAATAATCACCAGGTACCGACCTTCTGATAAGAAAAGTGATAAGGAATAACAGGAAGAGGTACACAACGTTAATGGGTACCGTTATCAGTGTGGTTGTAGGGACCTGCATTTCTGGGATCAATGAATGTATGTAGTGCTAATAGAAAGACGTTAGGGATTCGAATTGGGTATTCAATACCATCAAACTACAAGTGAATATTACCATAAACAGTTAATATCTCAGAACATTGTTGAATCTGAATGTGAATCAGCGACATTTGAGCAAAAATCATCCCTGAGAAGGTGTTATTTTTGTAATTTTGTAATAGACCAAAATTGTGAAACGTTAGAGGTACTGCAAATGTTGCAATAGAACGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCAACTTTGTAAATTGAGACT</pcr_primer_p1>
		<pcr_primer_p2>ACATCCTCTCTTTATTTCCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAGGTAAACAAGGGGCCGCTATCAGCTTATCAGTATATCTACGTGTTGAATAACCATGGCGGCGAGGGAACTGGAAATAAAGAGAGGATGT</canonical_amplicon>
		<polymorphic_amplicon>CACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAWCAATTATAGGCAACAGAAGGTAAACAAGGGGCCGCTATCAGCTTATCAGTATATCTACGTGTTGAATAACCATGGCGGCGAGGGAACTGGAAATAAAGAGAGGATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18438</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>377275</contig_pos>
        <strand>+</strand>
        <context>ATCACCCTGA[A/C]CCAGTTACCG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGA</left_flank>
        <right_flank>CCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTACTTCAAACTACTGCTTGGAATTTTTTCTGTTTCAAACTGCTTGGAATTTTTTCTGTTCCATAAACATTTTGAATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATTTCAAATTTAACACAGAATTTCACTACTTCCACTTATGTTTCCCCATGTTTTCTGTTTCACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAGGTAAACAAGGGGCCGCTATCAGCTTATCAGTATATCTACGTGTTGAATAACCATGGCGGCGAGGGAACTGGAAATAAAGAGAGGATGTATGTAATTTGTTGTTTGGAGCCCCAACAAATGCGCAAATAATCACCAGGTACCGACCTTCTGATAAGAAAAGTGATAAGGAATAACAGGAAGAGGTACACAACGTTAATGGGTACCGTTATCAGTGTGGTTGTAGGGACCTGCATTTCTGGGATCAATGAATGTATGTAGTGCTAATAGAAAGACGTTAGGGATTCGAATTGGGTATTCAATACCATCAAACTACAAGTGAATATTACCATAAACAGTTAATATCTCAGAACATTGTTGAATCTGAATGTGAATCAGCGACATTTGAGCAAAAATCATCCCTGAGAAGGTGTTATTTTTGTAATTTTGTAATAGACCAAAATTGTGAAACGT</canonical>
            <polymorphic>ATTTACTTCAAACTACTGCTTGGAATTTTTTCTGTTTCAAACTGCTTGGAATTTTTTCTGTTCCATAAACATTTTGAATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATTTCAAATTTAACACAGAATTTCACTACTTCCACTTATGTTTCCCCATGTTTTCTGTTTCACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGAMCCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAGGTAAACAAGGGGCCGCTATCAGCTTATCAGTATATCTACGTGTTGAATAACCATGGCGGCGAGGGAACTGGAAATAAAGAGAGGATGTATGTAATTTGTTGTTTGGAGCCCCAACAAATGCGCAAATAATCACCAGGTACCGACCTTCTGATAAGAAAAGTGATAAGGAATAACAGGAAGAGGTACACAACGTTAATGGGTACCGTTATCAGTGTGGTTGTAGGGACCTGCATTTCTGGGATCAATGAATGTATGTAGTGCTAATAGAAAGACGTTAGGGATTCGAATTGGGTATTCAATACCATCAAACTACAAGTGAATATTACCATAAACAGTTAATATCTCAGAACATTGTTGAATCTGAATGTGAATCAGCGACATTTGAGCAAAAATCATCCCTGAGAAGGTGTTATTTTTGTAATTTTGTAATAGACCAAAATTGTGAAACGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCAACTTTGTAAATTGAGACT</pcr_primer_p1>
		<pcr_primer_p2>ACATCCTCTCTTTATTTCCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAGGTAAACAAGGGGCCGCTATCAGCTTATCAGTATATCTACGTGTTGAATAACCATGGCGGCGAGGGAACTGGAAATAAAGAGAGGATGT</canonical_amplicon>
		<polymorphic_amplicon>CACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGAMCCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAGGTAAACAAGGGGCCGCTATCAGCTTATCAGTATATCTACGTGTTGAATAACCATGGCGGCGAGGGAACTGGAAATAAAGAGAGGATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18439</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>377262</contig_pos>
        <strand>+</strand>
        <context>AATTATCAGG[A/G]TAATCACCCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGG</left_flank>
        <right_flank>TAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAACAATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTGGCAATCAATTTACTTCAAACTACTGCTTGGAATTTTTTCTGTTTCAAACTGCTTGGAATTTTTTCTGTTCCATAAACATTTTGAATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATTTCAAATTTAACACAGAATTTCACTACTTCCACTTATGTTTCCCCATGTTTTCTGTTTCACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAGGTAAACAAGGGGCCGCTATCAGCTTATCAGTATATCTACGTGTTGAATAACCATGGCGGCGAGGGAACTGGAAATAAAGAGAGGATGTATGTAATTTGTTGTTTGGAGCCCCAACAAATGCGCAAATAATCACCAGGTACCGACCTTCTGATAAGAAAAGTGATAAGGAATAACAGGAAGAGGTACACAACGTTAATGGGTACCGTTATCAGTGTGGTTGTAGGGACCTGCATTTCTGGGATCAATGAATGTATGTAGTGCTAATAGAAAGACGTTAGGGATTCGAATTGGGTATTCAATACCATCAAACTACAAGTGAATATTACCATAAACAGTTAATATCTCAGAACATTGTTGAATCTGAATGTGAATCAGCGACATTTGAGCAAAAATCATCCCTGAGAAGGTGTTATTTTTGTAATTTTGTAATAGACCAA</canonical>
            <polymorphic>TATTTGGCAATCAATTTACTTCAAACTACTGCTTGGAATTTTTTCTGTTTCAAACTGCTTGGAATTTTTTCTGTTCCATAAACATTTTGAATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATTTCAAATTTAACACAGAATTTCACTACTTCCACTTATGTTTCCCCATGTTTTCTGTTTCACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGRTAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAGGTAAACAAGGGGCCGCTATCAGCTTATCAGTATATCTACGTGTTGAATAACCATGGCGGCGAGGGAACTGGAAATAAAGAGAGGATGTATGTAATTTGTTGTTTGGAGCCCCAACAAATGCGCAAATAATCACCAGGTACCGACCTTCTGATAAGAAAAGTGATAAGGAATAACAGGAAGAGGTACACAACGTTAATGGGTACCGTTATCAGTGTGGTTGTAGGGACCTGCATTTCTGGGATCAATGAATGTATGTAGTGCTAATAGAAAGACGTTAGGGATTCGAATTGGGTATTCAATACCATCAAACTACAAGTGAATATTACCATAAACAGTTAATATCTCAGAACATTGTTGAATCTGAATGTGAATCAGCGACATTTGAGCAAAAATCATCCCTGAGAAGGTGTTATTTTTGTAATTTTGTAATAGACCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>504 248 133 115</canonical_bands>
                <polymorphic_bands>752 133 115</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACCAACTTTGTAAATTGAGACT</pcr_primer_p1>
		<pcr_primer_p2>ACATCCTCTCTTTATTTCCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAGGTAAACAAGGGGCCGCTATCAGCTTATCAGTATATCTACGTGTTGAATAACCATGGCGGCGAGGGAACTGGAAATAAAGAGAGGATGT</canonical_amplicon>
		<polymorphic_amplicon>CACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGRTAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAGGTAAACAAGGGGCCGCTATCAGCTTATCAGTATATCTACGTGTTGAATAACCATGGCGGCGAGGGAACTGGAAATAAAGAGAGGATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18440</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>377209</contig_pos>
        <strand>+</strand>
        <context>TAATATGTCG[A/T]CGACTTCATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTTCACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCG</left_flank>
        <right_flank>CGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTACGGTATGTTAAAACCTAATTTCCGAAAAACCCTGTTTCAGGAATTTCATATTTGGCAATCAATTTACTTCAAACTACTGCTTGGAATTTTTTCTGTTTCAAACTGCTTGGAATTTTTTCTGTTCCATAAACATTTTGAATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATTTCAAATTTAACACAGAATTTCACTACTTCCACTTATGTTTCCCCATGTTTTCTGTTTCACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAGGTAAACAAGGGGCCGCTATCAGCTTATCAGTATATCTACGTGTTGAATAACCATGGCGGCGAGGGAACTGGAAATAAAGAGAGGATGTATGTAATTTGTTGTTTGGAGCCCCAACAAATGCGCAAATAATCACCAGGTACCGACCTTCTGATAAGAAAAGTGATAAGGAATAACAGGAAGAGGTACACAACGTTAATGGGTACCGTTATCAGTGTGGTTGTAGGGACCTGCATTTCTGGGATCAATGAATGTATGTAGTGCTAATAGAAAGACGTTAGGGATTCGAATTGGGTATTCAATACCATCAAACTACAAGTGAATATTACCATAAACAGTTAATATCTCAGAACATTGTTGAATCTGAATGTGAATCAGCGACATTTG</canonical>
            <polymorphic>TTTTACGGTATGTTAAAACCTAATTTCCGAAAAACCCTGTTTCAGGAATTTCATATTTGGCAATCAATTTACTTCAAACTACTGCTTGGAATTTTTTCTGTTTCAAACTGCTTGGAATTTTTTCTGTTCCATAAACATTTTGAATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATTTCAAATTTAACACAGAATTTCACTACTTCCACTTATGTTTCCCCATGTTTTCTGTTTCACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCGWCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAGGTAAACAAGGGGCCGCTATCAGCTTATCAGTATATCTACGTGTTGAATAACCATGGCGGCGAGGGAACTGGAAATAAAGAGAGGATGTATGTAATTTGTTGTTTGGAGCCCCAACAAATGCGCAAATAATCACCAGGTACCGACCTTCTGATAAGAAAAGTGATAAGGAATAACAGGAAGAGGTACACAACGTTAATGGGTACCGTTATCAGTGTGGTTGTAGGGACCTGCATTTCTGGGATCAATGAATGTATGTAGTGCTAATAGAAAGACGTTAGGGATTCGAATTGGGTATTCAATACCATCAAACTACAAGTGAATATTACCATAAACAGTTAATATCTCAGAACATTGTTGAATCTGAATGTGAATCAGCGACATTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>349 314 152 100 73 12</canonical_bands>
                <polymorphic_bands>361 314 152 100 73</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 199 182 118</canonical_bands>
                <polymorphic_bands>619 199 182</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTCGAC</site>
                <isoschizomers>
                    <enzyme>SalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGCTTTTGTTAATGCTATTT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTACCTTCTGTTGCCTATAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTGCTTTTGTTAATGCTATTTCAAATTTAACACAGAATTTCACTACTTCCACTTATGTTTCCCCATGTTTTCTGTTTCACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAGGTAAACA</canonical_amplicon>
		<polymorphic_amplicon>TTTTGCTTTTGTTAATGCTATTTCAAATTTAACACAGAATTTCACTACTTCCACTTATGTTTCCCCATGTTTTCTGTTTCACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCGWCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAGGTAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18441</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>377193</contig_pos>
        <strand>+</strand>
        <context>ACTGATTTTT[A/T]ATATATAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCCCCATGTTTTCTGTTTCACCAACTTTGTAAATTGAGACTGATTTTT</left_flank>
        <right_flank>ATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTGGCTCCATCAGGTTTTACGGTATGTTAAAACCTAATTTCCGAAAAACCCTGTTTCAGGAATTTCATATTTGGCAATCAATTTACTTCAAACTACTGCTTGGAATTTTTTCTGTTTCAAACTGCTTGGAATTTTTTCTGTTCCATAAACATTTTGAATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATTTCAAATTTAACACAGAATTTCACTACTTCCACTTATGTTTCCCCATGTTTTCTGTTTCACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAGGTAAACAAGGGGCCGCTATCAGCTTATCAGTATATCTACGTGTTGAATAACCATGGCGGCGAGGGAACTGGAAATAAAGAGAGGATGTATGTAATTTGTTGTTTGGAGCCCCAACAAATGCGCAAATAATCACCAGGTACCGACCTTCTGATAAGAAAAGTGATAAGGAATAACAGGAAGAGGTACACAACGTTAATGGGTACCGTTATCAGTGTGGTTGTAGGGACCTGCATTTCTGGGATCAATGAATGTATGTAGTGCTAATAGAAAGACGTTAGGGATTCGAATTGGGTATTCAATACCATCAAACTACAAGTGAATATTACCATAAACAGTTAATATCTCAGAACATTGTTGAATCTGAATGT</canonical>
            <polymorphic>AACTGGCTCCATCAGGTTTTACGGTATGTTAAAACCTAATTTCCGAAAAACCCTGTTTCAGGAATTTCATATTTGGCAATCAATTTACTTCAAACTACTGCTTGGAATTTTTTCTGTTTCAAACTGCTTGGAATTTTTTCTGTTCCATAAACATTTTGAATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATTTCAAATTTAACACAGAATTTCACTACTTCCACTTATGTTTCCCCATGTTTTCTGTTTCACCAACTTTGTAAATTGAGACTGATTTTTWATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAGGTAAACAAGGGGCCGCTATCAGCTTATCAGTATATCTACGTGTTGAATAACCATGGCGGCGAGGGAACTGGAAATAAAGAGAGGATGTATGTAATTTGTTGTTTGGAGCCCCAACAAATGCGCAAATAATCACCAGGTACCGACCTTCTGATAAGAAAAGTGATAAGGAATAACAGGAAGAGGTACACAACGTTAATGGGTACCGTTATCAGTGTGGTTGTAGGGACCTGCATTTCTGGGATCAATGAATGTATGTAGTGCTAATAGAAAGACGTTAGGGATTCGAATTGGGTATTCAATACCATCAAACTACAAGTGAATATTACCATAAACAGTTAATATCTCAGAACATTGTTGAATCTGAATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGCTTTTGTTAATGCTATTT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTACCTTCTGTTGCCTATAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTGCTTTTGTTAATGCTATTTCAAATTTAACACAGAATTTCACTACTTCCACTTATGTTTCCCCATGTTTTCTGTTTCACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAGGTAAACA</canonical_amplicon>
		<polymorphic_amplicon>TTTTGCTTTTGTTAATGCTATTTCAAATTTAACACAGAATTTCACTACTTCCACTTATGTTTCCCCATGTTTTCTGTTTCACCAACTTTGTAAATTGAGACTGATTTTTWATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAGGTAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18445</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>377017</contig_pos>
        <strand>+</strand>
        <context>TTTCATRATT[G/T]CTACTTTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATT</left_flank>
        <right_flank>CTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATCTTTTGAACTTGTTCAGTGAAATTGATAGATTTTCATACATTTTGAACAAAAGTTCACCGGTTCTCTTTGAAAAGTTTCGGGAAAAAAATGTTGGATAAATCGATGGGGTTCTTCTAATTGAAGAGCCTCTGTAATAAAAAAATTCTCAACGATTTTTCGAAACAATAGAAGAACTGGCTCCATCAGGTTTTACGGTATGTTAAAACCTAATTTCCGAAAAACCCTGTTTCAGGAATTTCATATTTGGCAATCAATTTACTTCAAACTACTGCTTGGAATTTTTTCTGTTTCAAACTGCTTGGAATTTTTTCTGTTCCATAAACATTTTGAATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATTTCAAATTTAACACAGAATTTCACTACTTCCACTTATGTTTCCCCATGTTTTCTGTTTCACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAGGTAAACAAGGGGCCGCTATCAGCTTATCAGTATATCTACGTGTTGAATAACCATGGCGGCGAGGGAACTGGAAATAAAGAGAGGATGTATGTAATTTGTTGTTTGGAGCCCCAACAAATGCGCAAATAATCACCAGGTACCGACCTTCTGATAAGAAAAGTGATAAGGAATAACAGGAAGAGGTACACAACG</canonical>
            <polymorphic>TAATCTTTTGAACTTGTTCAGTGAAATTGATAGATTTTCATACATTTTGAACAAAAGTTCACCGGTTCTCTTTGAAAAGTTTCGGGAAAAAAATGTTGGATAAATCGATGGGGTTCTTCTAATTGAAGAGCCTCTGTAATAAAAAAATTCTCAACGATTTTTCGAAACAATAGAAGAACTGGCTCCATCAGGTTTTACGGTATGTTAAAACCTAATTTCCGAAAAACCCTGTTTCAGGAATTTCATATTTGGCAATCAATTTACTTCAAACTACTGCTTGGAATTTTTTCTGTTTCAAACTGCTTGGAATTTTTTCTGTTCCATAAACATTTTGAATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTKCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATTTCAAATTTAACACAGAATTTCACTACTTCCACTTATGTTTCCCCATGTTTTCTGTTTCACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAGGTAAACAAGGGGCCGCTATCAGCTTATCAGTATATCTACGTGTTGAATAACCATGGCGGCGAGGGAACTGGAAATAAAGAGAGGATGTATGTAATTTGTTGTTTGGAGCCCCAACAAATGCGCAAATAATCACCAGGTACCGACCTTCTGATAAGAAAAGTGATAAGGAATAACAGGAAGAGGTACACAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTCATCGAAGTGTTCAATA</pcr_primer_p1>
		<pcr_primer_p2>AATAGCATTAACAAAAGCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATT</canonical_amplicon>
		<polymorphic_amplicon>AATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTKCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18446</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>377013</contig_pos>
        <strand>+</strand>
        <context>TAGTTTTCAT[A/G]ATTKCTACTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCAT</left_flank>
        <right_flank>ATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGTAATCTTTTGAACTTGTTCAGTGAAATTGATAGATTTTCATACATTTTGAACAAAAGTTCACCGGTTCTCTTTGAAAAGTTTCGGGAAAAAAATGTTGGATAAATCGATGGGGTTCTTCTAATTGAAGAGCCTCTGTAATAAAAAAATTCTCAACGATTTTTCGAAACAATAGAAGAACTGGCTCCATCAGGTTTTACGGTATGTTAAAACCTAATTTCCGAAAAACCCTGTTTCAGGAATTTCATATTTGGCAATCAATTTACTTCAAACTACTGCTTGGAATTTTTTCTGTTTCAAACTGCTTGGAATTTTTTCTGTTCCATAAACATTTTGAATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATTTCAAATTTAACACAGAATTTCACTACTTCCACTTATGTTTCCCCATGTTTTCTGTTTCACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAGGTAAACAAGGGGCCGCTATCAGCTTATCAGTATATCTACGTGTTGAATAACCATGGCGGCGAGGGAACTGGAAATAAAGAGAGGATGTATGTAATTTGTTGTTTGGAGCCCCAACAAATGCGCAAATAATCACCAGGTACCGACCTTCTGATAAGAAAAGTGATAAGGAATAACAGGAAGAGGTACAC</canonical>
            <polymorphic>ACAGTAATCTTTTGAACTTGTTCAGTGAAATTGATAGATTTTCATACATTTTGAACAAAAGTTCACCGGTTCTCTTTGAAAAGTTTCGGGAAAAAAATGTTGGATAAATCGATGGGGTTCTTCTAATTGAAGAGCCTCTGTAATAAAAAAATTCTCAACGATTTTTCGAAACAATAGAAGAACTGGCTCCATCAGGTTTTACGGTATGTTAAAACCTAATTTCCGAAAAACCCTGTTTCAGGAATTTCATATTTGGCAATCAATTTACTTCAAACTACTGCTTGGAATTTTTTCTGTTTCAAACTGCTTGGAATTTTTTCTGTTCCATAAACATTTTGAATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATRATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATTTCAAATTTAACACAGAATTTCACTACTTCCACTTATGTTTCCCCATGTTTTCTGTTTCACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAGGTAAACAAGGGGCCGCTATCAGCTTATCAGTATATCTACGTGTTGAATAACCATGGCGGCGAGGGAACTGGAAATAAAGAGAGGATGTATGTAATTTGTTGTTTGGAGCCCCAACAAATGCGCAAATAATCACCAGGTACCGACCTTCTGATAAGAAAAGTGATAAGGAATAACAGGAAGAGGTACAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>497 228 139 136</canonical_bands>
                <polymorphic_bands>636 228 136</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>255 248 152 143 115 87</canonical_bands>
                <polymorphic_bands>363 255 152 143 87</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTTCATCGAAGTGTTCAATA</pcr_primer_p1>
		<pcr_primer_p2>AATAGCATTAACAAAAGCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATT</canonical_amplicon>
		<polymorphic_amplicon>AATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATRATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18447</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>376970</contig_pos>
        <strand>+</strand>
        <context>CACTCCAAAT[G/T]TTTTTTTCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAAT</left_flank>
        <right_flank>TTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTACGTCATCAGTGAAAAATATTCCGGAAATCCCGCAATTTCACAGTAATCTTTTGAACTTGTTCAGTGAAATTGATAGATTTTCATACATTTTGAACAAAAGTTCACCGGTTCTCTTTGAAAAGTTTCGGGAAAAAAATGTTGGATAAATCGATGGGGTTCTTCTAATTGAAGAGCCTCTGTAATAAAAAAATTCTCAACGATTTTTCGAAACAATAGAAGAACTGGCTCCATCAGGTTTTACGGTATGTTAAAACCTAATTTCCGAAAAACCCTGTTTCAGGAATTTCATATTTGGCAATCAATTTACTTCAAACTACTGCTTGGAATTTTTTCTGTTTCAAACTGCTTGGAATTTTTTCTGTTCCATAAACATTTTGAATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATTTCAAATTTAACACAGAATTTCACTACTTCCACTTATGTTTCCCCATGTTTTCTGTTTCACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAGGTAAACAAGGGGCCGCTATCAGCTTATCAGTATATCTACGTGTTGAATAACCATGGCGGCGAGGGAACTGGAAATAAAGAGAGGATGTATGTAATTTGTTGTTTGGAGCCCCAACAAATGCGCAAATAATCACCAGGTACCGACC</canonical>
            <polymorphic>CGTACGTCATCAGTGAAAAATATTCCGGAAATCCCGCAATTTCACAGTAATCTTTTGAACTTGTTCAGTGAAATTGATAGATTTTCATACATTTTGAACAAAAGTTCACCGGTTCTCTTTGAAAAGTTTCGGGAAAAAAATGTTGGATAAATCGATGGGGTTCTTCTAATTGAAGAGCCTCTGTAATAAAAAAATTCTCAACGATTTTTCGAAACAATAGAAGAACTGGCTCCATCAGGTTTTACGGTATGTTAAAACCTAATTTCCGAAAAACCCTGTTTCAGGAATTTCATATTTGGCAATCAATTTACTTCAAACTACTGCTTGGAATTTTTTCTGTTTCAAACTGCTTGGAATTTTTTCTGTTCCATAAACATTTTGAATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATKTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATTTCAAATTTAACACAGAATTTCACTACTTCCACTTATGTTTCCCCATGTTTTCTGTTTCACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAGGTAAACAAGGGGCCGCTATCAGCTTATCAGTATATCTACGTGTTGAATAACCATGGCGGCGAGGGAACTGGAAATAAAGAGAGGATGTATGTAATTTGTTGTTTGGAGCCCCAACAAATGCGCAAATAATCACCAGGTACCGACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>350 192 115 93 77 65 43 27 26 12</canonical_bands>
                <polymorphic_bands>350 192 192 93 65 43 27 26 12</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>110 96 76 76 68 65 59 56 55 53 39 37 34 27 26 25 25 24 19 18 12</canonical_bands>
                <polymorphic_bands>110 96 94 76 68 65 59 56 55 53 39 37 34 27 26 25 25 24 19 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTTCATCGAAGTGTTCAATA</pcr_primer_p1>
		<pcr_primer_p2>AATAGCATTAACAAAAGCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATT</canonical_amplicon>
		<polymorphic_amplicon>AATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATKTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18448</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>393843</contig_pos>
        <strand></strand>
        <context>GAATGCATAC[C/T]CTARCTMCYA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATAC</left_flank>
        <right_flank>CTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTGTATTATGAAAAGTTTTTCTGAAATTGTAACATTATTTTTTTAAGTAGTCATCCATTAACAGGGAGATTTTTCGGAGGATTTCCTGGGCCGTATGCATTCTACCGTAACGGTGTACAACGCTGAATGTCACTCTGCGTACTGCTGTCGTCCTCACCCTTATGTTTACCACCGGGCGTCCGCTCCTCTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGACGCATCTTCAATACTCACCCCGACAAGTTCAATTCCTCAAGGGGCGTATTTAAAGGTGGGGAGACATGAAAAAAAATAATGTTCTCTAAATTCCGTTTAAATATGCCCCTCCAGGAGTTGAACTTGTGGGGGCGAGGATTGAGGGTGCGGTGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCCGGCTCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACG</canonical>
            <polymorphic>CTGTGTATTATGAAAAGTTTTTCTGAAATTGTAACATTATTTTTTTAAGTAGTCATCCATTAACAGGGAGATTTTTCGGAGGATTTCCTGGGCCGTATGCATTCTACCGTAACGGTGTACAACGCTGAATGTCACTCTGCGTACTGCTGTCGTCCTCACCCTTATGTTTACCACCGGGCGTCCGCTCCTCTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGACGCATCTTCAATACTCACCCCGACAAGTTCAATTCCTCAAGGGGCGTATTTAAAGGTGGGGAGACATGAAAAAAAATAATGTTCTCTAAATTCCGTTTAAATATGCCCCTCCAGGAGTTGAACTTGTGGGGGCGAGGATTGAGGGTGCGGTGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCCGGCTCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACYCTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACGCAGTGTGACATTAAGC</pcr_primer_p1>
		<pcr_primer_p2>GATGAAGCCGTAAACATTTG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>GTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATC</canonical_amplicon>
		<polymorphic_amplicon>GTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACYCTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18449</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>393847</contig_pos>
        <strand></strand>
        <context>GCATACYCTA[A/G]CTMCYAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTA</left_flank>
        <right_flank>CTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATT</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATTATGAAAAGTTTTTCTGAAATTGTAACATTATTTTTTTAAGTAGTCATCCATTAACAGGGAGATTTTTCGGAGGATTTCCTGGGCCGTATGCATTCTACCGTAACGGTGTACAACGCTGAATGTCACTCTGCGTACTGCTGTCGTCCTCACCCTTATGTTTACCACCGGGCGTCCGCTCCTCTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGACGCATCTTCAATACTCACCCCGACAAGTTCAATTCCTCAAGGGGCGTATTTAAAGGTGGGGAGACATGAAAAAAAATAATGTTCTCTAAATTCCGTTTAAATATGCCCCTCCAGGAGTTGAACTTGTGGGGGCGAGGATTGAGGGTGCGGTGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCCGGCTCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACGCGGC</canonical>
            <polymorphic>GTATTATGAAAAGTTTTTCTGAAATTGTAACATTATTTTTTTAAGTAGTCATCCATTAACAGGGAGATTTTTCGGAGGATTTCCTGGGCCGTATGCATTCTACCGTAACGGTGTACAACGCTGAATGTCACTCTGCGTACTGCTGTCGTCCTCACCCTTATGTTTACCACCGGGCGTCCGCTCCTCTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGACGCATCTTCAATACTCACCCCGACAAGTTCAATTCCTCAAGGGGCGTATTTAAAGGTGGGGAGACATGAAAAAAAATAATGTTCTCTAAATTCCGTTTAAATATGCCCCTCCAGGAGTTGAACTTGTGGGGGCGAGGATTGAGGGTGCGGTGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCCGGCTCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTARCTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACGCGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACGCAGTGTGACATTAAGC</pcr_primer_p1>
		<pcr_primer_p2>GATGAAGCCGTAAACATTTG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>GTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATC</canonical_amplicon>
		<polymorphic_amplicon>GTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTARCTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18450</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>393850</contig_pos>
        <strand>+</strand>
        <context>TACYCTARCT[A/C]CYAAAAAMCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACT</left_flank>
        <right_flank>CAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATGAAAAGTTTTTCTGAAATTGTAACATTATTTTTTTAAGTAGTCATCCATTAACAGGGAGATTTTTCGGAGGATTTCCTGGGCCGTATGCATTCTACCGTAACGGTGTACAACGCTGAATGTCACTCTGCGTACTGCTGTCGTCCTCACCCTTATGTTTACCACCGGGCGTCCGCTCCTCTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGACGCATCTTCAATACTCACCCCGACAAGTTCAATTCCTCAAGGGGCGTATTTAAAGGTGGGGAGACATGAAAAAAAATAATGTTCTCTAAATTCCGTTTAAATATGCCCCTCCAGGAGTTGAACTTGTGGGGGCGAGGATTGAGGGTGCGGTGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCCGGCTCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACGCGGCGTA</canonical>
            <polymorphic>TTATGAAAAGTTTTTCTGAAATTGTAACATTATTTTTTTAAGTAGTCATCCATTAACAGGGAGATTTTTCGGAGGATTTCCTGGGCCGTATGCATTCTACCGTAACGGTGTACAACGCTGAATGTCACTCTGCGTACTGCTGTCGTCCTCACCCTTATGTTTACCACCGGGCGTCCGCTCCTCTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGACGCATCTTCAATACTCACCCCGACAAGTTCAATTCCTCAAGGGGCGTATTTAAAGGTGGGGAGACATGAAAAAAAATAATGTTCTCTAAATTCCGTTTAAATATGCCCCTCCAGGAGTTGAACTTGTGGGGGCGAGGATTGAGGGTGCGGTGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCCGGCTCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTMCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACGCGGCGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACGCAGTGTGACATTAAGC</pcr_primer_p1>
		<pcr_primer_p2>GATGAAGCCGTAAACATTTG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>GTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATC</canonical_amplicon>
		<polymorphic_amplicon>GTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTMCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18451</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>393858</contig_pos>
        <strand></strand>
        <context>CTMCYAAAAA[C/A]CTMCGAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAA</left_flank>
        <right_flank>CTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTTTTCTGAAATTGTAACATTATTTTTTTAAGTAGTCATCCATTAACAGGGAGATTTTTCGGAGGATTTCCTGGGCCGTATGCATTCTACCGTAACGGTGTACAACGCTGAATGTCACTCTGCGTACTGCTGTCGTCCTCACCCTTATGTTTACCACCGGGCGTCCGCTCCTCTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGACGCATCTTCAATACTCACCCCGACAAGTTCAATTCCTCAAGGGGCGTATTTAAAGGTGGGGAGACATGAAAAAAAATAATGTTCTCTAAATTCCGTTTAAATATGCCCCTCCAGGAGTTGAACTTGTGGGGGCGAGGATTGAGGGTGCGGTGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCCGGCTCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACGCGGCGTAGACATACA</canonical>
            <polymorphic>AGTTTTTCTGAAATTGTAACATTATTTTTTTAAGTAGTCATCCATTAACAGGGAGATTTTTCGGAGGATTTCCTGGGCCGTATGCATTCTACCGTAACGGTGTACAACGCTGAATGTCACTCTGCGTACTGCTGTCGTCCTCACCCTTATGTTTACCACCGGGCGTCCGCTCCTCTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGACGCATCTTCAATACTCACCCCGACAAGTTCAATTCCTCAAGGGGCGTATTTAAAGGTGGGGAGACATGAAAAAAAATAATGTTCTCTAAATTCCGTTTAAATATGCCCCTCCAGGAGTTGAACTTGTGGGGGCGAGGATTGAGGGTGCGGTGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCCGGCTCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAAMCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACGCGGCGTAGACATACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACGCAGTGTGACATTAAGC</pcr_primer_p1>
		<pcr_primer_p2>GATGAAGCCGTAAACATTTG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>GTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATC</canonical_amplicon>
		<polymorphic_amplicon>GTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAAMCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18452</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>393861</contig_pos>
        <strand></strand>
        <context>CYAAAAAMCT[C/A]CGAAAAAWCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCT</left_flank>
        <right_flank>CGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCTGAAATTGTAACATTATTTTTTTAAGTAGTCATCCATTAACAGGGAGATTTTTCGGAGGATTTCCTGGGCCGTATGCATTCTACCGTAACGGTGTACAACGCTGAATGTCACTCTGCGTACTGCTGTCGTCCTCACCCTTATGTTTACCACCGGGCGTCCGCTCCTCTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGACGCATCTTCAATACTCACCCCGACAAGTTCAATTCCTCAAGGGGCGTATTTAAAGGTGGGGAGACATGAAAAAAAATAATGTTCTCTAAATTCCGTTTAAATATGCCCCTCCAGGAGTTGAACTTGTGGGGGCGAGGATTGAGGGTGCGGTGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCCGGCTCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACGCGGCGTAGACATACACCG</canonical>
            <polymorphic>TTTTCTGAAATTGTAACATTATTTTTTTAAGTAGTCATCCATTAACAGGGAGATTTTTCGGAGGATTTCCTGGGCCGTATGCATTCTACCGTAACGGTGTACAACGCTGAATGTCACTCTGCGTACTGCTGTCGTCCTCACCCTTATGTTTACCACCGGGCGTCCGCTCCTCTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGACGCATCTTCAATACTCACCCCGACAAGTTCAATTCCTCAAGGGGCGTATTTAAAGGTGGGGAGACATGAAAAAAAATAATGTTCTCTAAATTCCGTTTAAATATGCCCCTCCAGGAGTTGAACTTGTGGGGGCGAGGATTGAGGGTGCGGTGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCCGGCTCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTMCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACGCGGCGTAGACATACACCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>499 441 54 6</canonical_bands>
                <polymorphic_bands>940 54 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTACGCAGTGTGACATTAAGC</pcr_primer_p1>
		<pcr_primer_p2>GATGAAGCCGTAAACATTTG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>GTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATC</canonical_amplicon>
		<polymorphic_amplicon>GTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTMCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18454</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>393869</contig_pos>
        <strand></strand>
        <context>CTMCGAAAAA[A/T]CTCCTGTCCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTCCGAAAAA</left_flank>
        <right_flank>CTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCA</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGTAACATTATTTTTTTAAGTAGTCATCCATTAACAGGGAGATTTTTCGGAGGATTTCCTGGGCCGTATGCATTCTACCGTAACGGTGTACAACGCTGAATGTCACTCTGCGTACTGCTGTCGTCCTCACCCTTATGTTTACCACCGGGCGTCCGCTCCTCTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGACGCATCTTCAATACTCACCCCGACAAGTTCAATTCCTCAAGGGGCGTATTTAAAGGTGGGGAGACATGAAAAAAAATAATGTTCTCTAAATTCCGTTTAAATATGCCCCTCCAGGAGTTGAACTTGTGGGGGCGAGGATTGAGGGTGCGGTGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCCGGCTCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACGCGGCGTAGACATACACCGTACCACTC</canonical>
            <polymorphic>AATTGTAACATTATTTTTTTAAGTAGTCATCCATTAACAGGGAGATTTTTCGGAGGATTTCCTGGGCCGTATGCATTCTACCGTAACGGTGTACAACGCTGAATGTCACTCTGCGTACTGCTGTCGTCCTCACCCTTATGTTTACCACCGGGCGTCCGCTCCTCTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGACGCATCTTCAATACTCACCCCGACAAGTTCAATTCCTCAAGGGGCGTATTTAAAGGTGGGGAGACATGAAAAAAAATAATGTTCTCTAAATTCCGTTTAAATATGCCCCTCCAGGAGTTGAACTTGTGGGGGCGAGGATTGAGGGTGCGGTGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCCGGCTCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTCCGAAAAAWCTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACGCGGCGTAGACATACACCGTACCACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACGCAGTGTGACATTAAGC</pcr_primer_p1>
		<pcr_primer_p2>GATGAAGCCGTAAACATTTG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>GTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATC</canonical_amplicon>
		<polymorphic_amplicon>GTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTCCGAAAAAWCTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18457</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>394002</contig_pos>
        <strand></strand>
        <context>TTTTTTTTCG[A/G]AAGGGAGTWC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCG</left_flank>
        <right_flank>AAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTATGTTTACCACCGGGCGTCCGCTCCTCTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGACGCATCTTCAATACTCACCCCGACAAGTTCAATTCCTCAAGGGGCGTATTTAAAGGTGGGGAGACATGAAAAAAAATAATGTTCTCTAAATTCCGTTTAAATATGCCCCTCCAGGAGTTGAACTTGTGGGGGCGAGGATTGAGGGTGCGGTGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCCGGCTCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACGCGGCGTAGACATACACCGTACCACTCGGCGGTTTCTCCAATTGTGCCAGTTACTGGAAAAGACGTCATTTTTTGAAATTTATAACTTTGCCAAGAATGACCGAATTTAGGGGTTGAGAAGTTTAAGAAGGGGGAGGAACATGGAAAACTAAGTTTATAA</canonical>
            <polymorphic>CCTTATGTTTACCACCGGGCGTCCGCTCCTCTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGACGCATCTTCAATACTCACCCCGACAAGTTCAATTCCTCAAGGGGCGTATTTAAAGGTGGGGAGACATGAAAAAAAATAATGTTCTCTAAATTCCGTTTAAATATGCCCCTCCAGGAGTTGAACTTGTGGGGGCGAGGATTGAGGGTGCGGTGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCCGGCTCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGRAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACGCGGCGTAGACATACACCGTACCACTCGGCGGTTTCTCCAATTGTGCCAGTTACTGGAAAAGACGTCATTTTTTGAAATTTATAACTTTGCCAAGAATGACCGAATTTAGGGGTTGAGAAGTTTAAGAAGGGGGAGGAACATGGAAAACTAAGTTTATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 259 239</canonical_bands>
                <polymorphic_bands>741 259</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAACAAAATTTGGAGAACAATA</pcr_primer_p1>
		<pcr_primer_p2>TGTTTGTGTTTTGAAGAATGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACA</canonical_amplicon>
		<polymorphic_amplicon>CAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGRAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18458</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>394011</contig_pos>
        <strand></strand>
        <context>GRAAGGGAGT[A/T]CGGTATCGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGT</left_flank>
        <right_flank>CGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTG</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACCACCGGGCGTCCGCTCCTCTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGACGCATCTTCAATACTCACCCCGACAAGTTCAATTCCTCAAGGGGCGTATTTAAAGGTGGGGAGACATGAAAAAAAATAATGTTCTCTAAATTCCGTTTAAATATGCCCCTCCAGGAGTTGAACTTGTGGGGGCGAGGATTGAGGGTGCGGTGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCCGGCTCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACGCGGCGTAGACATACACCGTACCACTCGGCGGTTTCTCCAATTGTGCCAGTTACTGGAAAAGACGTCATTTTTTGAAATTTATAACTTTGCCAAGAATGACCGAATTTAGGGGTTGAGAAGTTTAAGAAGGGGGAGGAACATGGAAAACTAAGTTTATAAATGTTCAAA</canonical>
            <polymorphic>TACCACCGGGCGTCCGCTCCTCTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGACGCATCTTCAATACTCACCCCGACAAGTTCAATTCCTCAAGGGGCGTATTTAAAGGTGGGGAGACATGAAAAAAAATAATGTTCTCTAAATTCCGTTTAAATATGCCCCTCCAGGAGTTGAACTTGTGGGGGCGAGGATTGAGGGTGCGGTGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCCGGCTCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTWCGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACGCGGCGTAGACATACACCGTACCACTCGGCGGTTTCTCCAATTGTGCCAGTTACTGGAAAAGACGTCATTTTTTGAAATTTATAACTTTGCCAAGAATGACCGAATTTAGGGGTTGAGAAGTTTAAGAAGGGGGAGGAACATGGAAAACTAAGTTTATAAATGTTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>352 283 192 149 24</canonical_bands>
                <polymorphic_bands>544 283 149 24</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>347 312 184 151 6</canonical_bands>
                <polymorphic_bands>531 312 151 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAACAAAATTTGGAGAACAATA</pcr_primer_p1>
		<pcr_primer_p2>TGTTTGTGTTTTGAAGAATGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACA</canonical_amplicon>
		<polymorphic_amplicon>CAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTWCGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18459</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>394068</contig_pos>
        <strand>+</strand>
        <context>TTTGTATACG[C/T]GCCATTTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACG</left_flank>
        <right_flank>GCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTTCAATACTCACCCCGACAAGTTCAATTCCTCAAGGGGCGTATTTAAAGGTGGGGAGACATGAAAAAAAATAATGTTCTCTAAATTCCGTTTAAATATGCCCCTCCAGGAGTTGAACTTGTGGGGGCGAGGATTGAGGGTGCGGTGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCCGGCTCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACGCGGCGTAGACATACACCGTACCACTCGGCGGTTTCTCCAATTGTGCCAGTTACTGGAAAAGACGTCATTTTTTGAAATTTATAACTTTGCCAAGAATGACCGAATTTAGGGGTTGAGAAGTTTAAGAAGGGGGAGGAACATGGAAAACTAAGTTTATAAATGTTCAAAAAATTATACAAGTTCCGAATGCAAAATTTGAGAAAACTTGATACGAAACTGCTGCTT</canonical>
            <polymorphic>ATCTTCAATACTCACCCCGACAAGTTCAATTCCTCAAGGGGCGTATTTAAAGGTGGGGAGACATGAAAAAAAATAATGTTCTCTAAATTCCGTTTAAATATGCCCCTCCAGGAGTTGAACTTGTGGGGGCGAGGATTGAGGGTGCGGTGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCCGGCTCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGYGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACGCGGCGTAGACATACACCGTACCACTCGGCGGTTTCTCCAATTGTGCCAGTTACTGGAAAAGACGTCATTTTTTGAAATTTATAACTTTGCCAAGAATGACCGAATTTAGGGGTTGAGAAGTTTAAGAAGGGGGAGGAACATGGAAAACTAAGTTTATAAATGTTCAAAAAATTATACAAGTTCCGAATGCAAAATTTGAGAAAACTTGATACGAAACTGCTGCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>180 140 120 70 67 55 50 47 41 34 24 22 19 18 17 17 15 14 10 9 8 7 6 5 3 2</canonical_bands>
                <polymorphic_bands>180 150 120 70 67 55 50 47 41 34 24 22 19 18 17 17 15 14 9 8 7 6 5 3 2</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>497 340 163</canonical_bands>
                <polymorphic_bands>837 163</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAACAAAATTTGGAGAACAATA</pcr_primer_p1>
		<pcr_primer_p2>TGTTTGTGTTTTGAAGAATGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACA</canonical_amplicon>
		<polymorphic_amplicon>CAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGYGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18460</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>394203</contig_pos>
        <strand>+</strand>
        <context>TATTAATTTG[A/G]GAGTAAATTW</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTG</left_flank>
        <right_flank>GAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAGGGTGCGGTGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCCGGCTCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACGCGGCGTAGACATACACCGTACCACTCGGCGGTTTCTCCAATTGTGCCAGTTACTGGAAAAGACGTCATTTTTTGAAATTTATAACTTTGCCAAGAATGACCGAATTTAGGGGTTGAGAAGTTTAAGAAGGGGGAGGAACATGGAAAACTAAGTTTATAAATGTTCAAAAAATTATACAAGTTCCGAATGCAAAATTTGAGAAAACTTGATACGAAACTGCTGCTTTACCAGTAAGAGCTAATTCACAATTGTAAAAAAATCAATTTGAAACAGAAAATACTTTTTTGTTCCCTAAAATTTATTTATTAAAATATATTATTATTATTGTCCGGAATTTGATAATTCATTATACATAAGGGG</canonical>
            <polymorphic>TTGAGGGTGCGGTGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCCGGCTCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGRGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACGCGGCGTAGACATACACCGTACCACTCGGCGGTTTCTCCAATTGTGCCAGTTACTGGAAAAGACGTCATTTTTTGAAATTTATAACTTTGCCAAGAATGACCGAATTTAGGGGTTGAGAAGTTTAAGAAGGGGGAGGAACATGGAAAACTAAGTTTATAAATGTTCAAAAAATTATACAAGTTCCGAATGCAAAATTTGAGAAAACTTGATACGAAACTGCTGCTTTACCAGTAAGAGCTAATTCACAATTGTAAAAAAATCAATTTGAAACAGAAAATACTTTTTTGTTCCCTAAAATTTATTTATTAAAATATATTATTATTATTGTCCGGAATTTGATAATTCATTATACATAAGGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTTTGCAAATGTTTACG</pcr_primer_p1>
		<pcr_primer_p2>TATTTTTGAATTCCATTTTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATA</canonical_amplicon>
		<polymorphic_amplicon>CATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGRGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18461</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>394213</contig_pos>
        <strand>+</strand>
        <context>RGAGTAAATT[A/T]TTTCTCAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATT</left_flank>
        <right_flank>TTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCCGGCTCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACGCGGCGTAGACATACACCGTACCACTCGGCGGTTTCTCCAATTGTGCCAGTTACTGGAAAAGACGTCATTTTTTGAAATTTATAACTTTGCCAAGAATGACCGAATTTAGGGGTTGAGAAGTTTAAGAAGGGGGAGGAACATGGAAAACTAAGTTTATAAATGTTCAAAAAATTATACAAGTTCCGAATGCAAAATTTGAGAAAACTTGATACGAAACTGCTGCTTTACCAGTAAGAGCTAATTCACAATTGTAAAAAAATCAATTTGAAACAGAAAATACTTTTTTGTTCCCTAAAATTTATTTATTAAAATATATTATTATTATTGTCCGGAATTTGATAATTCATTATACATAAGGGGGACATGTGAT</canonical>
            <polymorphic>GGTGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCCGGCTCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTWTTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACGCGGCGTAGACATACACCGTACCACTCGGCGGTTTCTCCAATTGTGCCAGTTACTGGAAAAGACGTCATTTTTTGAAATTTATAACTTTGCCAAGAATGACCGAATTTAGGGGTTGAGAAGTTTAAGAAGGGGGAGGAACATGGAAAACTAAGTTTATAAATGTTCAAAAAATTATACAAGTTCCGAATGCAAAATTTGAGAAAACTTGATACGAAACTGCTGCTTTACCAGTAAGAGCTAATTCACAATTGTAAAAAAATCAATTTGAAACAGAAAATACTTTTTTGTTCCCTAAAATTTATTTATTAAAATATATTATTATTATTGTCCGGAATTTGATAATTCATTATACATAAGGGGGACATGTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTTTGCAAATGTTTACG</pcr_primer_p1>
		<pcr_primer_p2>TATTTTTGAATTCCATTTTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATA</canonical_amplicon>
		<polymorphic_amplicon>CATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTWTTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18462</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>394230</contig_pos>
        <strand>+</strand>
        <context>AAAATGTTTT[C/T]TCAATAATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTT</left_flank>
        <right_flank>TCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCACGCGGGCAAAGAGAAAGCGCCGGCTCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACGCGGCGTAGACATACACCGTACCACTCGGCGGTTTCTCCAATTGTGCCAGTTACTGGAAAAGACGTCATTTTTTGAAATTTATAACTTTGCCAAGAATGACCGAATTTAGGGGTTGAGAAGTTTAAGAAGGGGGAGGAACATGGAAAACTAAGTTTATAAATGTTCAAAAAATTATACAAGTTCCGAATGCAAAATTTGAGAAAACTTGATACGAAACTGCTGCTTTACCAGTAAGAGCTAATTCACAATTGTAAAAAAATCAATTTGAAACAGAAAATACTTTTTTGTTCCCTAAAATTTATTTATTAAAATATATTATTATTATTGTCCGGAATTTGATAATTCATTATACATAAGGGGGACATGTGATTTTTCCAACTTTTTTCG</canonical>
            <polymorphic>AGCCACGCGGGCAAAGAGAAAGCGCCGGCTCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTYTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACGCGGCGTAGACATACACCGTACCACTCGGCGGTTTCTCCAATTGTGCCAGTTACTGGAAAAGACGTCATTTTTTGAAATTTATAACTTTGCCAAGAATGACCGAATTTAGGGGTTGAGAAGTTTAAGAAGGGGGAGGAACATGGAAAACTAAGTTTATAAATGTTCAAAAAATTATACAAGTTCCGAATGCAAAATTTGAGAAAACTTGATACGAAACTGCTGCTTTACCAGTAAGAGCTAATTCACAATTGTAAAAAAATCAATTTGAAACAGAAAATACTTTTTTGTTCCCTAAAATTTATTTATTAAAATATATTATTATTATTGTCCGGAATTTGATAATTCATTATACATAAGGGGGACATGTGATTTTTCCAACTTTTTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTCAAAACACAAACAATTT</pcr_primer_p1>
		<pcr_primer_p2>TGGTACGGTGTATGTCTACG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACGCGGCGTAGACATACACCGTACCA</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTYTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACGCGGCGTAGACATACACCGTACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18463</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>394337</contig_pos>
        <strand>+</strand>
        <context>TAAGGGTATA[C/T]AAAACGCGGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATA</left_flank>
        <right_flank>AAAACGCGGCGTAGACATACACCGTACCACTCGGCGGTTTCTCCAATTGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATACCCTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACGCGGCGTAGACATACACCGTACCACTCGGCGGTTTCTCCAATTGTGCCAGTTACTGGAAAAGACGTCATTTTTTGAAATTTATAACTTTGCCAAGAATGACCGAATTTAGGGGTTGAGAAGTTTAAGAAGGGGGAGGAACATGGAAAACTAAGTTTATAAATGTTCAAAAAATTATACAAGTTCCGAATGCAAAATTTGAGAAAACTTGATACGAAACTGCTGCTTTACCAGTAAGAGCTAATTCACAATTGTAAAAAAATCAATTTGAAACAGAAAATACTTTTTTGTTCCCTAAAATTTATTTATTAAAATATATTATTATTATTGTCCGGAATTTGATAATTCATTATACATAAGGGGGACATGTGATTTTTCCAACTTTTTTCGGACTTTACAGCATGCATTCTGATGTGGTGGTGTACAGTGATTAGTGTTTACCGAAACTATTATGCCGCTTCCATAAATGACATCGGTCGGCTGCGCAGTTTACGCCA</canonical>
            <polymorphic>CATACCCTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATAYAAAACGCGGCGTAGACATACACCGTACCACTCGGCGGTTTCTCCAATTGTGCCAGTTACTGGAAAAGACGTCATTTTTTGAAATTTATAACTTTGCCAAGAATGACCGAATTTAGGGGTTGAGAAGTTTAAGAAGGGGGAGGAACATGGAAAACTAAGTTTATAAATGTTCAAAAAATTATACAAGTTCCGAATGCAAAATTTGAGAAAACTTGATACGAAACTGCTGCTTTACCAGTAAGAGCTAATTCACAATTGTAAAAAAATCAATTTGAAACAGAAAATACTTTTTTGTTCCCTAAAATTTATTTATTAAAATATATTATTATTATTGTCCGGAATTTGATAATTCATTATACATAAGGGGGACATGTGATTTTTCCAACTTTTTTCGGACTTTACAGCATGCATTCTGATGTGGTGGTGTACAGTGATTAGTGTTTACCGAAACTATTATGCCGCTTCCATAAATGACATCGGTCGGCTGCGCAGTTTACGCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>488 271 225 16</canonical_bands>
                <polymorphic_bands>488 287 225</polymorphic_bands>
            </assay>
            <assay>
                <site>GTATAC</site>
                <isoschizomers>
                    <enzyme>BssNAI</enzyme>
                    <enzyme>Bst1107I</enzyme>
                    <enzyme>BstZ17I</enzyme>
                </isoschizomers>
                <canonical_bands>503 271 226</canonical_bands>
                <polymorphic_bands>774 226</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>412 253 198 52 18 16 16 15 13 7</canonical_bands>
                <polymorphic_bands>412 269 198 52 18 16 15 13 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAATTTTTCACCTTTCTCAC</pcr_primer_p1>
		<pcr_primer_p2>GTAACTGGCACAATTGGAGA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACGCGGCGTAGACATACACCGTACCACTCGGCGGTTTCTCCAATTGTGCCAGTTAC</canonical_amplicon>
		<polymorphic_amplicon>CTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATAYAAAACGCGGCGTAGACATACACCGTACCACTCGGCGGTTTCTCCAATTGTGCCAGTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18464</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>395818</contig_pos>
        <strand>+</strand>
        <context>TGAAAATGAG[C/T]ACAGAaatag</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAG</left_flank>
        <right_flank>ACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACAGTGATGGATTAGATTGGTTGCAATGCACTTTTTGAATGTTTAAAAACGACGACGATACTCGCGAAGTGATGATAGTGACATTTCTCTTGATTTCTATTTTTAAGTTAATTTTATTACCATTTTTGTTGATTTTTTTCCTGTTTTTCGATTGTTGATGACAAACTTTTTTCAAAAATTTGTCTTCGAAAAATAGAACGTCACCATCTAATAAAACGCCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAACTGAAGACTTCAAAAAATTTTCCAGTTGCATATTTTCAAGAAGTTCCACAGTTTTGATTTTCTTTTGATGGGTCGTGTGCTGCCGTATCCTTATTTCCATCTTTTTATTTCATTTCTTCGAATGCTTTTGTACTTTGATCCGAAATGAAGC</canonical>
            <polymorphic>TACAGTGATGGATTAGATTGGTTGCAATGCACTTTTTGAATGTTTAAAAACGACGACGATACTCGCGAAGTGATGATAGTGACATTTCTCTTGATTTCTATTTTTAAGTTAATTTTATTACCATTTTTGTTGATTTTTTTCCTGTTTTTCGATTGTTGATGACAAACTTTTTTCAAAAATTTGTCTTCGAAAAATAGAACGTCACCATCTAATAAAACGCCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGYACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAACTGAAGACTTCAAAAAATTTTCCAGTTGCATATTTTCAAGAAGTTCCACAGTTTTGATTTTCTTTTGATGGGTCGTGTGCTGCCGTATCCTTATTTCCATCTTTTTATTTCATTTCTTCGAATGCTTTTGTACTTTGATCCGAAATGAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 259 221 20</canonical_bands>
                <polymorphic_bands>759 221 20</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>498 480 22</canonical_bands>
                <polymorphic_bands>978 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCCATTCCGATGAGATAAG</pcr_primer_p1>
		<pcr_primer_p2>TATTGTACGAGGCTGGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>AATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATA</canonical_amplicon>
		<polymorphic_amplicon>AATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGYACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18465</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>395785</contig_pos>
        <strand>+</strand>
        <context>ATGAGATAAG[C/T]CGGTGATAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAG</left_flank>
        <right_flank>CGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTTGAAGGATAAAAACGATTTCCGAGCAGATTACAGTGATGGATTAGATTGGTTGCAATGCACTTTTTGAATGTTTAAAAACGACGACGATACTCGCGAAGTGATGATAGTGACATTTCTCTTGATTTCTATTTTTAAGTTAATTTTATTACCATTTTTGTTGATTTTTTTCCTGTTTTTCGATTGTTGATGACAAACTTTTTTCAAAAATTTGTCTTCGAAAAATAGAACGTCACCATCTAATAAAACGCCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAACTGAAGACTTCAAAAAATTTTCCAGTTGCATATTTTCAAGAAGTTCCACAGTTTTGATTTTCTTTTGATGGGTCGTGTGCTGCCGTATCCTTATTTCCATCTTTTTATTTCATTTCTT</canonical>
            <polymorphic>ACCTTGAAGGATAAAAACGATTTCCGAGCAGATTACAGTGATGGATTAGATTGGTTGCAATGCACTTTTTGAATGTTTAAAAACGACGACGATACTCGCGAAGTGATGATAGTGACATTTCTCTTGATTTCTATTTTTAAGTTAATTTTATTACCATTTTTGTTGATTTTTTTCCTGTTTTTCGATTGTTGATGACAAACTTTTTTCAAAAATTTGTCTTCGAAAAATAGAACGTCACCATCTAATAAAACGCCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGYCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAACTGAAGACTTCAAAAAATTTTCCAGTTGCATATTTTCAAGAAGTTCCACAGTTTTGATTTTCTTTTGATGGGTCGTGTGCTGCCGTATCCTTATTTCCATCTTTTTATTTCATTTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 412 88</canonical_bands>
                <polymorphic_bands>588 412</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>340 174 159 128 86 79 34</canonical_bands>
                <polymorphic_bands>340 238 174 128 86 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTGATTTATTTTTGTATTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TATTGTACGAGGCTGGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>459</pcr_amplicon_size>
		<canonical_amplicon>GCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATA</canonical_amplicon>
		<polymorphic_amplicon>GCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGYCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18466</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>395741</contig_pos>
        <strand></strand>
        <context>ATTGTGTTTT[A/G]TAAGTAGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTT</left_flank>
        <right_flank>TAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATACAGCGCCACCCTCTAATAGAACACCGCCTGTAATATAACGCACCTTGAAGGATAAAAACGATTTCCGAGCAGATTACAGTGATGGATTAGATTGGTTGCAATGCACTTTTTGAATGTTTAAAAACGACGACGATACTCGCGAAGTGATGATAGTGACATTTCTCTTGATTTCTATTTTTAAGTTAATTTTATTACCATTTTTGTTGATTTTTTTCCTGTTTTTCGATTGTTGATGACAAACTTTTTTCAAAAATTTGTCTTCGAAAAATAGAACGTCACCATCTAATAAAACGCCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAACTGAAGACTTCAAAAAATTTTCCAGTTGCATATTTTCAAGAAGTTCCACAGTTTTGATTTTCTTTTGATGGGTC</canonical>
            <polymorphic>ATACAGCGCCACCCTCTAATAGAACACCGCCTGTAATATAACGCACCTTGAAGGATAAAAACGATTTCCGAGCAGATTACAGTGATGGATTAGATTGGTTGCAATGCACTTTTTGAATGTTTAAAAACGACGACGATACTCGCGAAGTGATGATAGTGACATTTCTCTTGATTTCTATTTTTAAGTTAATTTTATTACCATTTTTGTTGATTTTTTTCCTGTTTTTCGATTGTTGATGACAAACTTTTTTCAAAAATTTGTCTTCGAAAAATAGAACGTCACCATCTAATAAAACGCCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTRTAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAACTGAAGACTTCAAAAAATTTTCCAGTTGCATATTTTCAAGAAGTTCCACAGTTTTGATTTTCTTTTGATGGGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCAAGCTTGATTTATTTTTGTA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCAACGCTTTTGATAACTA</pcr_primer_p2>
		<pcr_amplicon_size>195</pcr_amplicon_size>
		<canonical_amplicon>AGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTRTAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18468</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>395709</contig_pos>
        <strand>+</strand>
        <context>GGAAAGTTCA[A/G]ATTATTRAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCA</left_flank>
        <right_flank>ATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATACAACGCCACCGACAGACCACCTCCGAAAAATACAGCGCCACCCTCTAATAGAACACCGCCTGTAATATAACGCACCTTGAAGGATAAAAACGATTTCCGAGCAGATTACAGTGATGGATTAGATTGGTTGCAATGCACTTTTTGAATGTTTAAAAACGACGACGATACTCGCGAAGTGATGATAGTGACATTTCTCTTGATTTCTATTTTTAAGTTAATTTTATTACCATTTTTGTTGATTTTTTTCCTGTTTTTCGATTGTTGATGACAAACTTTTTTCAAAAATTTGTCTTCGAAAAATAGAACGTCACCATCTAATAAAACGCCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAACTGAAGACTTCAAAAAATTTTCCAGTTGCATATTTTCAAGAA</canonical>
            <polymorphic>ATACAACGCCACCGACAGACCACCTCCGAAAAATACAGCGCCACCCTCTAATAGAACACCGCCTGTAATATAACGCACCTTGAAGGATAAAAACGATTTCCGAGCAGATTACAGTGATGGATTAGATTGGTTGCAATGCACTTTTTGAATGTTTAAAAACGACGACGATACTCGCGAAGTGATGATAGTGACATTTCTCTTGATTTCTATTTTTAAGTTAATTTTATTACCATTTTTGTTGATTTTTTTCCTGTTTTTCGATTGTTGATGACAAACTTTTTTCAAAAATTTGTCTTCGAAAAATAGAACGTCACCATCTAATAAAACGCCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCARATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAACTGAAGACTTCAAAAAATTTTCCAGTTGCATATTTTCAAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>326 262 110 104 74 65 32 27</canonical_bands>
                <polymorphic_bands>326 262 169 110 74 32 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCAAGCTTGATTTATTTTTGTA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCAACGCTTTTGATAACTA</pcr_primer_p2>
		<pcr_amplicon_size>195</pcr_amplicon_size>
		<canonical_amplicon>AGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCARATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18469</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>395694</contig_pos>
        <strand>+</strand>
        <context>CAGAATTTCC[A/T]TTCCGGAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCC</left_flank>
        <right_flank>TTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAACGCCCCCTCTAATACAACGCCACCGACAGACCACCTCCGAAAAATACAGCGCCACCCTCTAATAGAACACCGCCTGTAATATAACGCACCTTGAAGGATAAAAACGATTTCCGAGCAGATTACAGTGATGGATTAGATTGGTTGCAATGCACTTTTTGAATGTTTAAAAACGACGACGATACTCGCGAAGTGATGATAGTGACATTTCTCTTGATTTCTATTTTTAAGTTAATTTTATTACCATTTTTGTTGATTTTTTTCCTGTTTTTCGATTGTTGATGACAAACTTTTTTCAAAAATTTGTCTTCGAAAAATAGAACGTCACCATCTAATAAAACGCCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAACTGAAGACTTCAAAAAATTTTCCAGTT</canonical>
            <polymorphic>ACAACGCCCCCTCTAATACAACGCCACCGACAGACCACCTCCGAAAAATACAGCGCCACCCTCTAATAGAACACCGCCTGTAATATAACGCACCTTGAAGGATAAAAACGATTTCCGAGCAGATTACAGTGATGGATTAGATTGGTTGCAATGCACTTTTTGAATGTTTAAAAACGACGACGATACTCGCGAAGTGATGATAGTGACATTTCTCTTGATTTCTATTTTTAAGTTAATTTTATTACCATTTTTGTTGATTTTTTTCCTGTTTTTCGATTGTTGATGACAAACTTTTTTCAAAAATTTGTCTTCGAAAAATAGAACGTCACCATCTAATAAAACGCCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCWTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAACTGAAGACTTCAAAAAATTTTCCAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCAAGCTTGATTTATTTTTGTA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCAACGCTTTTGATAACTA</pcr_primer_p2>
		<pcr_amplicon_size>195</pcr_amplicon_size>
		<canonical_amplicon>AGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCWTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18470</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>395669</contig_pos>
        <strand>+</strand>
        <context>ACTTTCGAGC[A/C]YTGAAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGC</left_flank>
        <right_flank>TTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAA</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCTTATACCGTAAAAACTGTAATACAACGCCCCCTCTAATACAACGCCACCGACAGACCACCTCCGAAAAATACAGCGCCACCCTCTAATAGAACACCGCCTGTAATATAACGCACCTTGAAGGATAAAAACGATTTCCGAGCAGATTACAGTGATGGATTAGATTGGTTGCAATGCACTTTTTGAATGTTTAAAAACGACGACGATACTCGCGAAGTGATGATAGTGACATTTCTCTTGATTTCTATTTTTAAGTTAATTTTATTACCATTTTTGTTGATTTTTTTCCTGTTTTTCGATTGTTGATGACAAACTTTTTTCAAAAATTTGTCTTCGAAAAATAGAACGTCACCATCTAATAAAACGCCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAACT</canonical>
            <polymorphic>CTTCTTATACCGTAAAAACTGTAATACAACGCCCCCTCTAATACAACGCCACCGACAGACCACCTCCGAAAAATACAGCGCCACCCTCTAATAGAACACCGCCTGTAATATAACGCACCTTGAAGGATAAAAACGATTTCCGAGCAGATTACAGTGATGGATTAGATTGGTTGCAATGCACTTTTTGAATGTTTAAAAACGACGACGATACTCGCGAAGTGATGATAGTGACATTTCTCTTGATTTCTATTTTTAAGTTAATTTTATTACCATTTTTGTTGATTTTTTTCCTGTTTTTCGATTGTTGATGACAAACTTTTTTCAAAAATTTGTCTTCGAAAAATAGAACGTCACCATCTAATAAAACGCCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCMTTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGTATCAGAAAAGCATATCTAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTATCTCATCGGAATGGATTT</pcr_primer_p2>
		<pcr_amplicon_size>188</pcr_amplicon_size>
		<canonical_amplicon>TGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAA</canonical_amplicon>
		<polymorphic_amplicon>TGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCMTTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18471</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>395654</contig_pos>
        <strand>+</strand>
        <context>TGTTTTTTWA[A/G]GGCAACTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTA</left_flank>
        <right_flank>GGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGACACACTACGAACTTCTTATACCGTAAAAACTGTAATACAACGCCCCCTCTAATACAACGCCACCGACAGACCACCTCCGAAAAATACAGCGCCACCCTCTAATAGAACACCGCCTGTAATATAACGCACCTTGAAGGATAAAAACGATTTCCGAGCAGATTACAGTGATGGATTAGATTGGTTGCAATGCACTTTTTGAATGTTTAAAAACGACGACGATACTCGCGAAGTGATGATAGTGACATTTCTCTTGATTTCTATTTTTAAGTTAATTTTATTACCATTTTTGTTGATTTTTTTCCTGTTTTTCGATTGTTGATGACAAACTTTTTTCAAAAATTTGTCTTCGAAAAATAGAACGTCACCATCTAATAAAACGCCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGT</canonical>
            <polymorphic>TTGACACACTACGAACTTCTTATACCGTAAAAACTGTAATACAACGCCCCCTCTAATACAACGCCACCGACAGACCACCTCCGAAAAATACAGCGCCACCCTCTAATAGAACACCGCCTGTAATATAACGCACCTTGAAGGATAAAAACGATTTCCGAGCAGATTACAGTGATGGATTAGATTGGTTGCAATGCACTTTTTGAATGTTTAAAAACGACGACGATACTCGCGAAGTGATGATAGTGACATTTCTCTTGATTTCTATTTTTAAGTTAATTTTATTACCATTTTTGTTGATTTTTTTCCTGTTTTTCGATTGTTGATGACAAACTTTTTTCAAAAATTTGTCTTCGAAAAATAGAACGTCACCATCTAATAAAACGCCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTARGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>224 208 184 129 106 63 60 21 5</canonical_bands>
                <polymorphic_bands>287 208 184 129 106 60 21 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGTATCAGAAAAGCATATCTAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTATCTCATCGGAATGGATTT</pcr_primer_p2>
		<pcr_amplicon_size>188</pcr_amplicon_size>
		<canonical_amplicon>TGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAA</canonical_amplicon>
		<polymorphic_amplicon>TGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTARGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18472</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>396168</contig_pos>
        <strand>+</strand>
        <context>CTTTCGAAAA[C/T]TGAAGACTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAA</left_flank>
        <right_flank>TGAAGACTTCAAAAAATTTTCCAGTTGCATATTTTCAAGAAGTTCCACAG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAACTGAAGACTTCAAAAAATTTTCCAGTTGCATATTTTCAAGAAGTTCCACAGTTTTGATTTTCTTTTGATGGGTCGTGTGCTGCCGTATCCTTATTTCCATCTTTTTATTTCATTTCTTCGAATGCTTTTGTACTTTGATCCGAAATGAAGCCCAAAGTTCGATGAACAAAACATCACTTTTTCTGGGACTCCGCCCTTTTTTATCTAACTGTCGGAGGTGTAAAAAAAGTAACAAAATGTGTTAGGACAGAGACTGGCACCACGAACTGTTTCGTTGCTCTCTTGCTAACTTTATGATTCATTTTTCTCAAATTGTTTCTTTCCTTTTTGTGTTTCTGCGTCTCTTTTCTAACTCTTTCCGGAGGAGGTGTATTTTTGGTTGTCTGAAATTGATGTTTCAACTGGGATGTCAATTTTTTTGAAAATATTTCTGCCGTTTCAAAACCTTTATTTTTGTTGATTCTTAAATGTTTTTAAACTATTTAAAAATCTTTGTTAAAA</canonical>
            <polymorphic>ATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAAYTGAAGACTTCAAAAAATTTTCCAGTTGCATATTTTCAAGAAGTTCCACAGTTTTGATTTTCTTTTGATGGGTCGTGTGCTGCCGTATCCTTATTTCCATCTTTTTATTTCATTTCTTCGAATGCTTTTGTACTTTGATCCGAAATGAAGCCCAAAGTTCGATGAACAAAACATCACTTTTTCTGGGACTCCGCCCTTTTTTATCTAACTGTCGGAGGTGTAAAAAAAGTAACAAAATGTGTTAGGACAGAGACTGGCACCACGAACTGTTTCGTTGCTCTCTTGCTAACTTTATGATTCATTTTTCTCAAATTGTTTCTTTCCTTTTTGTGTTTCTGCGTCTCTTTTCTAACTCTTTCCGGAGGAGGTGTATTTTTGGTTGTCTGAAATTGATGTTTCAACTGGGATGTCAATTTTTTTGAAAATATTTCTGCCGTTTCAAAACCTTTATTTTTGTTGATTCTTAAATGTTTTTAAACTATTTAAAAATCTTTGTTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTCCAGCCTCGTACAATA</pcr_primer_p1>
		<pcr_primer_p2>ATTTCGGATCAAAGTACAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAACTGAAGACTTCAAAAAATTTTCCAGTTGCATATTTTCAAGAAGTTCCACAGTTTTGATTTTCTTTTGATGGGTCGTGTGCTGCCGTATCCTTATTTCCATCTTTTTATTTCATTTCTTCGAATGCTTTTGTACTTTGATCCGAAAT</canonical_amplicon>
		<polymorphic_amplicon>CTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAAYTGAAGACTTCAAAAAATTTTCCAGTTGCATATTTTCAAGAAGTTCCACAGTTTTGATTTTCTTTTGATGGGTCGTGTGCTGCCGTATCCTTATTTCCATCTTTTTATTTCATTTCTTCGAATGCTTTTGTACTTTGATCCGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18473</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>396062</contig_pos>
        <strand>+</strand>
        <context>TTCGAAATGC[A/C]TCTTTCCAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGC</left_flank>
        <right_flank>TCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAACTGAAGACTTCAAAAAATTTTCCAGTTGCATATTTTCAAGAAGTTCCACAGTTTTGATTTTCTTTTGATGGGTCGTGTGCTGCCGTATCCTTATTTCCATCTTTTTATTTCATTTCTTCGAATGCTTTTGTACTTTGATCCGAAATGAAGCCCAAAGTTCGATGAACAAAACATCACTTTTTCTGGGACTCCGCCCTTTTTTATCTAACTGTCGGAGGTGTAAAAAAAGTAACAAAATGTGTTAGGACAGAGACTGGCACCACGAACTGTTTCGTTGCTCTCTTGCTAACTTTATGATTCATTTTTCTCAAATTGTTTCTTTCCTTTTTGTGTTTCTGCGTCTCTTTTCTAACTCTTTCCGGAGGAGGTGTATTTTTGGTTGTCTGAAATTGATG</canonical>
            <polymorphic>AGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCMTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAACTGAAGACTTCAAAAAATTTTCCAGTTGCATATTTTCAAGAAGTTCCACAGTTTTGATTTTCTTTTGATGGGTCGTGTGCTGCCGTATCCTTATTTCCATCTTTTTATTTCATTTCTTCGAATGCTTTTGTACTTTGATCCGAAATGAAGCCCAAAGTTCGATGAACAAAACATCACTTTTTCTGGGACTCCGCCCTTTTTTATCTAACTGTCGGAGGTGTAAAAAAAGTAACAAAATGTGTTAGGACAGAGACTGGCACCACGAACTGTTTCGTTGCTCTCTTGCTAACTTTATGATTCATTTTTCTCAAATTGTTTCTTTCCTTTTTGTGTTTCTGCGTCTCTTTTCTAACTCTTTCCGGAGGAGGTGTATTTTTGGTTGTCTGAAATTGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCAAAAGCGTTGAAAATGA</pcr_primer_p1>
		<pcr_primer_p2>AAAACCATATTTCTCCGACAG</pcr_primer_p2>
		<pcr_amplicon_size>319</pcr_amplicon_size>
		<canonical_amplicon>TATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCMTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18474</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>396037</contig_pos>
        <strand>+</strand>
        <context>TTAAGACAAA[A/G]CCTTCCAGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAA</left_flank>
        <right_flank>CCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAACTGAAGACTTCAAAAAATTTTCCAGTTGCATATTTTCAAGAAGTTCCACAGTTTTGATTTTCTTTTGATGGGTCGTGTGCTGCCGTATCCTTATTTCCATCTTTTTATTTCATTTCTTCGAATGCTTTTGTACTTTGATCCGAAATGAAGCCCAAAGTTCGATGAACAAAACATCACTTTTTCTGGGACTCCGCCCTTTTTTATCTAACTGTCGGAGGTGTAAAAAAAGTAACAAAATGTGTTAGGACAGAGACTGGCACCACGAACTGTTTCGTTGCTCTCTTGCTAACTTTATGATTCATTTTTCTCAAATTGTTTCTTTCCTTTTTGTGTTTCTGCGTCTCTTTTCTAACTCTTTCCGGAGGAGGTG</canonical>
            <polymorphic>CCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAARCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAACTGAAGACTTCAAAAAATTTTCCAGTTGCATATTTTCAAGAAGTTCCACAGTTTTGATTTTCTTTTGATGGGTCGTGTGCTGCCGTATCCTTATTTCCATCTTTTTATTTCATTTCTTCGAATGCTTTTGTACTTTGATCCGAAATGAAGCCCAAAGTTCGATGAACAAAACATCACTTTTTCTGGGACTCCGCCCTTTTTTATCTAACTGTCGGAGGTGTAAAAAAAGTAACAAAATGTGTTAGGACAGAGACTGGCACCACGAACTGTTTCGTTGCTCTCTTGCTAACTTTATGATTCATTTTTCTCAAATTGTTTCTTTCCTTTTTGTGTTTCTGCGTCTCTTTTCTAACTCTTTCCGGAGGAGGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>220 174 160 159 88 86 79 34</canonical_bands>
                <polymorphic_bands>220 208 160 159 88 86 79</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCAAAAGCGTTGAAAATGA</pcr_primer_p1>
		<pcr_primer_p2>CTCCGACAGTATCAAAAGTTATT</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>TATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAG</canonical_amplicon>
		<polymorphic_amplicon>TATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAARCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18475</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>396024</contig_pos>
        <strand>+</strand>
        <context>CAAAGTTTTC[C/T]TTTTAAGACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTC</left_flank>
        <right_flank>TTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTAATAAAACGCCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAACTGAAGACTTCAAAAAATTTTCCAGTTGCATATTTTCAAGAAGTTCCACAGTTTTGATTTTCTTTTGATGGGTCGTGTGCTGCCGTATCCTTATTTCCATCTTTTTATTTCATTTCTTCGAATGCTTTTGTACTTTGATCCGAAATGAAGCCCAAAGTTCGATGAACAAAACATCACTTTTTCTGGGACTCCGCCCTTTTTTATCTAACTGTCGGAGGTGTAAAAAAAGTAACAAAATGTGTTAGGACAGAGACTGGCACCACGAACTGTTTCGTTGCTCTCTTGCTAACTTTATGATTCATTTTTCTCAAATTGTTTCTTTCCTTTTTGTGTTTCTGCGTCTCTTTTCTAACTCTT</canonical>
            <polymorphic>ATCTAATAAAACGCCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCYTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAACTGAAGACTTCAAAAAATTTTCCAGTTGCATATTTTCAAGAAGTTCCACAGTTTTGATTTTCTTTTGATGGGTCGTGTGCTGCCGTATCCTTATTTCCATCTTTTTATTTCATTTCTTCGAATGCTTTTGTACTTTGATCCGAAATGAAGCCCAAAGTTCGATGAACAAAACATCACTTTTTCTGGGACTCCGCCCTTTTTTATCTAACTGTCGGAGGTGTAAAAAAAGTAACAAAATGTGTTAGGACAGAGACTGGCACCACGAACTGTTTCGTTGCTCTCTTGCTAACTTTATGATTCATTTTTCTCAAATTGTTTCTTTCCTTTTTGTGTTTCTGCGTCTCTTTTCTAACTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCAAAAGCGTTGAAAATGA</pcr_primer_p1>
		<pcr_primer_p2>TATTGTACGAGGCTGGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>288</pcr_amplicon_size>
		<canonical_amplicon>TATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATA</canonical_amplicon>
		<polymorphic_amplicon>TATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCYTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18476</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>396008</contig_pos>
        <strand>+</strand>
        <context>GCACTGTATT[C/T]ATTCTCAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATT</left_flank>
        <right_flank>ATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATAGAACGTCACCATCTAATAAAACGCCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAACTGAAGACTTCAAAAAATTTTCCAGTTGCATATTTTCAAGAAGTTCCACAGTTTTGATTTTCTTTTGATGGGTCGTGTGCTGCCGTATCCTTATTTCCATCTTTTTATTTCATTTCTTCGAATGCTTTTGTACTTTGATCCGAAATGAAGCCCAAAGTTCGATGAACAAAACATCACTTTTTCTGGGACTCCGCCCTTTTTTATCTAACTGTCGGAGGTGTAAAAAAAGTAACAAAATGTGTTAGGACAGAGACTGGCACCACGAACTGTTTCGTTGCTCTCTTGCTAACTTTATGATTCATTTTTCTCAAATTGTTTCTTTCCTTTTTGTGTTTCTGCGT</canonical>
            <polymorphic>AAAATAGAACGTCACCATCTAATAAAACGCCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTYATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAACTGAAGACTTCAAAAAATTTTCCAGTTGCATATTTTCAAGAAGTTCCACAGTTTTGATTTTCTTTTGATGGGTCGTGTGCTGCCGTATCCTTATTTCCATCTTTTTATTTCATTTCTTCGAATGCTTTTGTACTTTGATCCGAAATGAAGCCCAAAGTTCGATGAACAAAACATCACTTTTTCTGGGACTCCGCCCTTTTTTATCTAACTGTCGGAGGTGTAAAAAAAGTAACAAAATGTGTTAGGACAGAGACTGGCACCACGAACTGTTTCGTTGCTCTCTTGCTAACTTTATGATTCATTTTTCTCAAATTGTTTCTTTCCTTTTTGTGTTTCTGCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCAAAAGCGTTGAAAATGA</pcr_primer_p1>
		<pcr_primer_p2>TATTGTACGAGGCTGGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>288</pcr_amplicon_size>
		<canonical_amplicon>TATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATA</canonical_amplicon>
		<polymorphic_amplicon>TATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTYATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18497</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>48719</contig_pos>
        <strand>+</strand>
        <context>TCCGAAAAAA[A/C]CGCAATTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAA</left_flank>
        <right_flank>CGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCCGAGAAAGCGGGTGGAATCGTTGTTGACGAGTTGAAAAAGCTCACTCTTCCATATGGTTCAGCACAGATTCATCAGACAATTCTAGACGCTTTTCGTATTTTACACACAAATCGAGCACAAACTGGAATCGATGGAGTCGGCACGGGTAGAGCTATTCAGGTGGGCCAAAAATCGAAAATTTTGAAAATACGCTCAAAATTTGGCTTAAAATCTCAAATATCGCAATTTTAAGCTTAAAAATACGCTCTAAAACGTTCAAAAACGCCTTGGGAACCCCTAGAAACCCTAAAAATCGCATTTTCGCGCATTTTATAAAAAATGCACACGTGGCTAAGTGGTTACTGGAATTCCCAACCTGACGATCCGGGTTCGGTTCCCCCTGGTGGCAAATTTTTTGAAACATCGTTTTAGACCATTTTCACAGTGTTTGGAGCACTTGAACGGCTAAAA</canonical>
            <polymorphic>CAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAMCGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCCGAGAAAGCGGGTGGAATCGTTGTTGACGAGTTGAAAAAGCTCACTCTTCCATATGGTTCAGCACAGATTCATCAGACAATTCTAGACGCTTTTCGTATTTTACACACAAATCGAGCACAAACTGGAATCGATGGAGTCGGCACGGGTAGAGCTATTCAGGTGGGCCAAAAATCGAAAATTTTGAAAATACGCTCAAAATTTGGCTTAAAATCTCAAATATCGCAATTTTAAGCTTAAAAATACGCTCTAAAACGTTCAAAAACGCCTTGGGAACCCCTAGAAACCCTAAAAATCGCATTTTCGCGCATTTTATAAAAAATGCACACGTGGCTAAGTGGTTACTGGAATTCCCAACCTGACGATCCGGGTTCGGTTCCCCCTGGTGGCAAATTTTTTGAAACATCGTTTTAGACCATTTTCACAGTGTTTGGAGCACTTGAACGGCTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAATGGTCTTAAAAATGATG</pcr_primer_p1>
		<pcr_primer_p2>GTGTAAAATACGAAAAGCGTCTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCCGAGAAAGCGGGTGGAATCGTTGTTGACGAGTTGAAAAAGCTCACTCTTCCATATGGTTCAGCACAGATTCATCAGACAATTCTAGACGCTTTTCGTATTTTACAC</canonical_amplicon>
		<polymorphic_amplicon>CAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAMCGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCCGAGAAAGCGGGTGGAATCGTTGTTGACGAGTTGAAAAAGCTCACTCTTCCATATGGTTCAGCACAGATTCATCAGACAATTCTAGACGCTTTTCGTATTTTACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18498</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>48686</contig_pos>
        <strand>+</strand>
        <context>TGCTCAAAAA[C/T]GATGAATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAA</left_flank>
        <right_flank>GATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCCGAGAAAGCGGGTGGAATCGTTGTTGACGAGTTGAAAAAGCTCACTCTTCCATATGGTTCAGCACAGATTCATCAGACAATTCTAGACGCTTTTCGTATTTTACACACAAATCGAGCACAAACTGGAATCGATGGAGTCGGCACGGGTAGAGCTATTCAGGTGGGCCAAAAATCGAAAATTTTGAAAATACGCTCAAAATTTGGCTTAAAATCTCAAATATCGCAATTTTAAGCTTAAAAATACGCTCTAAAACGTTCAAAAACGCCTTGGGAACCCCTAGAAACCCTAAAAATCGCATTTTCGCGCATTTTATAAAAAATGCACACGTGGCTAAGTGGTTACTGGAATTCCCAACCTGACGATCCGGGTTCGGTTCCCCCTGGTGGCAAATTTTTTGAAACATCGTTTTAGACCATT</canonical>
            <polymorphic>CTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAAYGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCCGAGAAAGCGGGTGGAATCGTTGTTGACGAGTTGAAAAAGCTCACTCTTCCATATGGTTCAGCACAGATTCATCAGACAATTCTAGACGCTTTTCGTATTTTACACACAAATCGAGCACAAACTGGAATCGATGGAGTCGGCACGGGTAGAGCTATTCAGGTGGGCCAAAAATCGAAAATTTTGAAAATACGCTCAAAATTTGGCTTAAAATCTCAAATATCGCAATTTTAAGCTTAAAAATACGCTCTAAAACGTTCAAAAACGCCTTGGGAACCCCTAGAAACCCTAAAAATCGCATTTTCGCGCATTTTATAAAAAATGCACACGTGGCTAAGTGGTTACTGGAATTCCCAACCTGACGATCCGGGTTCGGTTCCCCCTGGTGGCAAATTTTTTGAAACATCGTTTTAGACCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAATGGTCTTAAAAATGATG</pcr_primer_p1>
		<pcr_primer_p2>GTGTAAAATACGAAAAGCGTCTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCCGAGAAAGCGGGTGGAATCGTTGTTGACGAGTTGAAAAAGCTCACTCTTCCATATGGTTCAGCACAGATTCATCAGACAATTCTAGACGCTTTTCGTATTTTACAC</canonical_amplicon>
		<polymorphic_amplicon>CAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAAYGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCCGAGAAAGCGGGTGGAATCGTTGTTGACGAGTTGAAAAAGCTCACTCTTCCATATGGTTCAGCACAGATTCATCAGACAATTCTAGACGCTTTTCGTATTTTACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18499</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>48538</contig_pos>
        <strand>+</strand>
        <context>ACGACGAATT[G/T]TGTCTTCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATT</left_flank>
        <right_flank>TGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCCGAGAAAGCGGGTGGAATCGTTGTTGACGAGTTGAAAAAGCTCACTCTTCCATATGGTTCAGCACAGATTCATCAGACAATTCTAGACGCTTTTCGTATTTTACACACAAATCGAGCACAAACTGGAATCGATGGAGTCGGCACGGGTAGAGCTATTCAGGTGGGCCAAAAATCGAAAATTTTGAAAATACGCTCAAAATTTGGCTTAAAATCTCAAATATCGCAATTTTAAGCTTAAAAATACGCTCTAAAACGTTCAAAAACGCCTTG</canonical>
            <polymorphic>CAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTKTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCCGAGAAAGCGGGTGGAATCGTTGTTGACGAGTTGAAAAAGCTCACTCTTCCATATGGTTCAGCACAGATTCATCAGACAATTCTAGACGCTTTTCGTATTTTACACACAAATCGAGCACAAACTGGAATCGATGGAGTCGGCACGGGTAGAGCTATTCAGGTGGGCCAAAAATCGAAAATTTTGAAAATACGCTCAAAATTTGGCTTAAAATCTCAAATATCGCAATTTTAAGCTTAAAAATACGCTCTAAAACGTTCAAAAACGCCTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>200 160 73 60 54 43 42 42 42 41 39 33 21 21 21 21 21 20 20 13 13</canonical_bands>
                <polymorphic_bands>200 160 73 63 60 54 43 42 42 41 39 33 21 21 21 21 20 20 13 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATACCCAAATTCTGACTG</pcr_primer_p1>
		<pcr_primer_p2>CATCATTTTTAAGACCATTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTKTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18500</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>48475</contig_pos>
        <strand>+</strand>
        <context>AAAGGTTATT[G/T]TGGCTCGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATT</left_flank>
        <right_flank>TGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCCGAGAAAGCGGGTGGAATCGTTGTTGACGAGTTGAAAAAGCTCACTCTTCCATATGGTTCAGCACAGATTCATCAGACAATTCTAGACGCTTTTCGTATTTTACACACAAATCGAGCACAAACTGGAATCGATGGAGTCGGCACGGGTAGAGCTATTCAGGTGGGCCAAAAATCGAAAATTTTGAAAATACGCTCAAAATTTGGCTT</canonical>
            <polymorphic>CCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTKTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCCGAGAAAGCGGGTGGAATCGTTGTTGACGAGTTGAAAAAGCTCACTCTTCCATATGGTTCAGCACAGATTCATCAGACAATTCTAGACGCTTTTCGTATTTTACACACAAATCGAGCACAAACTGGAATCGATGGAGTCGGCACGGGTAGAGCTATTCAGGTGGGCCAAAAATCGAAAATTTTGAAAATACGCTCAAAATTTGGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATACCCAAATTCTGACTG</pcr_primer_p1>
		<pcr_primer_p2>CATCATTTTTAAGACCATTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTKTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18502</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>48381</contig_pos>
        <strand>+</strand>
        <context>GGCTCAAAAT[G/T]CTCTTTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAAT</left_flank>
        <right_flank>CTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCCGAGAAAGCGGGTGGAATCGTTGTTGACGAGTTGAAAAAGCTCACTCTTCCATATGGTTCAGCACAGATTCATCAGACAATTCTAGACGCTTTTCGTATTTTACACACAAATC</canonical>
            <polymorphic>AATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATKCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCCGAGAAAGCGGGTGGAATCGTTGTTGACGAGTTGAAAAAGCTCACTCTTCCATATGGTTCAGCACAGATTCATCAGACAATTCTAGACGCTTTTCGTATTTTACACACAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>173 160 136 60 54 42 42 42 41 39 33 21 21 21 21 21 20 15 13 13 12</canonical_bands>
                <polymorphic_bands>173 160 136 60 54 46 42 42 42 41 39 21 21 21 21 21 20 15 13 12</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>101 77 72 54 42 42 39 38 35 33 23 21 21 21 21 21 21 21 21 21 21 21 21 20 20 20 19 18 15 14 13 13 13 12 8 7 0</canonical_bands>
                <polymorphic_bands>101 77 72 54 46 42 42 39 38 35 23 21 21 21 21 21 21 21 21 21 21 21 21 20 20 20 19 18 15 14 13 13 12 8 7 0</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCAATTTGGCTTGAAAATG</pcr_primer_p1>
		<pcr_primer_p2>GAAAATGACCGATTTTTCAGT</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>GTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTC</canonical_amplicon>
		<polymorphic_amplicon>GTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATKCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18503</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>48370</contig_pos>
        <strand></strand>
        <context>TAGCGAATTT[C/T]GGCTCAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTT</left_flank>
        <right_flank>GGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCCGAGAAAGCGGGTGGAATCGTTGTTGACGAGTTGAAAAAGCTCACTCTTCCATATGGTTCAGCACAGATTCATCAGACAATTCTAGACGCTTTTCGTATTTT</canonical>
            <polymorphic>TTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTYGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCCGAGAAAGCGGGTGGAATCGTTGTTGACGAGTTGAAAAAGCTCACTCTTCCATATGGTTCAGCACAGATTCATCAGACAATTCTAGACGCTTTTCGTATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAATTTGGCTTGAAAATG</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAGTCAGAATTTGGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTYGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18504</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>48324</contig_pos>
        <strand></strand>
        <context>AAAATGATGA[T/A]TTWTCGCTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGA</left_flank>
        <right_flank>TTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAAAATCTGAAAAATTGAAAAAAAAATGACCAAAAACGAGATTTTTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCCGAGAAAGCGGGTGGAATCGTTGTTGACGAGTTGAAAAAGCTCACTCTTCCATATG</canonical>
            <polymorphic>CAGAAAATCTGAAAAATTGAAAAAAAAATGACCAAAAACGAGATTTTTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGAWTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCCGAGAAAGCGGGTGGAATCGTTGTTGACGAGTTGAAAAAGCTCACTCTTCCATATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAATTTGGCTTGAAAATG</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAGTCAGAATTTGGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGAWTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18505</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>48306</contig_pos>
        <strand></strand>
        <context>AAAGTCAAST[A/T]TGWCTCAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATT</left_flank>
        <right_flank>TGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTACGCGAAAAATGACACAGAAAATCTGAAAAATTGAAAAAAAAATGACCAAAAACGAGATTTTTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCCGAGAAAGCGGGTGGAATCGTTGTTGACGAGTTGAAAA</canonical>
            <polymorphic>AGTACGCGAAAAATGACACAGAAAATCTGAAAAATTGAAAAAAAAATGACCAAAAACGAGATTTTTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTWTGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCCGAGAAAGCGGGTGGAATCGTTGTTGACGAGTTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAATTTGGCTTGAAAATG</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAGTCAGAATTTGGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTWTGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18509</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>48282</contig_pos>
        <strand>+</strand>
        <context>TCAAAAATGA[C/T]GAATTTATKT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGA</left_flank>
        <right_flank>GAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGAAAATATCCGGAAAATGTGAAAGTACGCGAAAAATGACACAGAAAATCTGAAAAATTGAAAAAAAAATGACCAAAAACGAGATTTTTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCCGAGAAAGCGGGTG</canonical>
            <polymorphic>GGGAAAATATCCGGAAAATGTGAAAGTACGCGAAAAATGACACAGAAAATCTGAAAAATTGAAAAAAAAATGACCAAAAACGAGATTTTTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGAYGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCCGAGAAAGCGGGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAATTTGGCTTGAAAATG</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAGTCAGAATTTGGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGAYGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18511</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>48260</contig_pos>
        <strand>+</strand>
        <context>CTTARAASTG[A/C]TGAATTTTAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTG</left_flank>
        <right_flank>TGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATATTTTCTGCTGACAACACAGGGAAAATATCCGGAAAATGTGAAAGTACGCGAAAAATGACACAGAAAATCTGAAAAATTGAAAAAAAAATGACCAAAAACGAGATTTTTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAG</canonical>
            <polymorphic>GATATTTTCTGCTGACAACACAGGGAAAATATCCGGAAAATGTGAAAGTACGCGAAAAATGACACAGAAAATCTGAAAAATTGAAAAAAAAATGACCAAAAACGAGATTTTTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGMTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAATTTGGCTTGAAAATG</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAGTCAGAATTTGGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGMTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18512</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>60404</contig_pos>
        <strand>+</strand>
        <context>AATATGTAAA[A/T]ATTGWTATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTCATCTGAATTCGTCCATTTTCCCCCGATTTTCAAAAATATGTAAA</left_flank>
        <right_flank>ATTGATATTTTTCGATATTTTTCAGTTTTTTTTCATTGAAATCGTATTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCACCACCTCGTGTACTCCTCTCGGGAAAGAGGGGAATATGAATTTTCTCAGCACTTTTCGCTGGTTTTCTATTGATTTTCCCGACGAAATCAATGATTTCTTTTGGGAAAATTGATTTTTTGAGGTGTAAATCATCAGTTTCATCGTATTTAGCATTAAAAATAACCTAAAAATAGGGAATTTCTGTTGGAAATTCGGTTTTTTCTCGAGAAATTTGAAAATTGTGTCAGAATTTGAATTTTTCCCGTTTTTCCATTGAAATTGTCTATTTTTCCAAAATTTACATGTTTTCCGGTCATTATTTTCAGATTTGTCGCAGAAAAATACCCTAGAATGTTGGAAAATCAATATTTTTCGAATTCGAAATTTTCCCAATTTTTTAAATGAACTTTCTAGAATTTTCGCCTGTTTTATAATGCTTTTATCGTAAATTTCACATTTTCTCCAATTTTCATCTGAATTCGTCCATTTTCCCCCGATTTTCAAAAATATGTAAATATTGATATTTTTCGATATTTTTCAGTTTTTTTTCATTGAAATCGTATTTTTGTGCAATTTTGAATTGCAATTTTACCCTTTTTTTGTGTTCAACTTGAAAATTTTTTCCAATTTGCAGCATGCCAAAGTACTATTGCGACTACTGCGACACATTTCTGACGCACGACTCGCCGTCGGTGCGAAAAACACACAACGGGGGAAGGAAGCACAAGGATAACGTTAGAATGTTCTATCAGGTAGGATTTTCCTGGATTTTAAGGTAAAATATCCCAAAAAATTCGAAATTTTCCAGAAATGGATGGAAGACCAGGCGCAGAAGCTCGTCGATCAGACTGCGAGAGCATTTGCCACGAATCGAGTGAGTTTTCATTGATTTTTAGCTGAAAAATGACCCAAAATTGATAGATTTCGACCTAATTTTGCTATTTTTGACCTAAAAACTATCAAAAATCGCTAATTTCCAGATGCACGGCGCGGTGCCACGTACAACGATGGGAATG</canonical>
            <polymorphic>TCCACCACCTCGTGTACTCCTCTCGGGAAAGAGGGGAATATGAATTTTCTCAGCACTTTTCGCTGGTTTTCTATTGATTTTCCCGACGAAATCAATGATTTCTTTTGGGAAAATTGATTTTTTGAGGTGTAAATCATCAGTTTCATCGTATTTAGCATTAAAAATAACCTAAAAATAGGGAATTTCTGTTGGAAATTCGGTTTTTTCTCGAGAAATTTGAAAATTGTGTCAGAATTTGAATTTTTCCCGTTTTTCCATTGAAATTGTCTATTTTTCCAAAATTTACATGTTTTCCGGTCATTATTTTCAGATTTGTCGCAGAAAAATACCCTAGAATGTTGGAAAATCAATATTTTTCGAATTCGAAATTTTCCCAATTTTTTAAATGAACTTTCTAGAATTTTCGCCTGTTTTATAATGCTTTTATCGTAAATTTCACATTTTCTCCAATTTTCATCTGAATTCGTCCATTTTCCCCCGATTTTCAAAAATATGTAAAWATTGATATTTTTCGATATTTTTCAGTTTTTTTTCATTGAAATCGTATTTTTGTGCAATTTTGAATTGCAATTTTACCCTTTTTTTGTGTTCAACTTGAAAATTTTTTCCAATTTGCAGCATGCCAAAGTACTATTGCGACTACTGCGACACATTTCTGACGCACGACTCGCCGTCGGTGCGAAAAACACACAACGGGGGAAGGAAGCACAAGGATAACGTTAGAATGTTCTATCAGGTAGGATTTTCCTGGATTTTAAGGTAAAATATCCCAAAAAATTCGAAATTTTCCAGAAATGGATGGAAGACCAGGCGCAGAAGCTCGTCGATCAGACTGCGAGAGCATTTGCCACGAATCGAGTGAGTTTTCATTGATTTTTAGCTGAAAAATGACCCAAAATTGATAGATTTCGACCTAATTTTGCTATTTTTGACCTAAAAACTATCAAAAATCGCTAATTTCCAGATGCACGGCGCGGTGCCACGTACAACGATGGGAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 351 149</canonical_bands>
                <polymorphic_bands>649 351</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAAAAATACCCTAGAATGTTG</pcr_primer_p1>
		<pcr_primer_p2>AATTCAAAATTGCACAAAAATAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGAAAAATACCCTAGAATGTTGGAAAATCAATATTTTTCGAATTCGAAATTTTCCCAATTTTTTAAATGAACTTTCTAGAATTTTCGCCTGTTTTATAATGCTTTTATCGTAAATTTCACATTTTCTCCAATTTTCATCTGAATTCGTCCATTTTCCCCCGATTTTCAAAAATATGTAAATATTGATATTTTTCGATATTTTTCAGTTTTTTTTCATTGAAATCGTATTTTTGTGCAATTTTGAATT</canonical_amplicon>
		<polymorphic_amplicon>CAGAAAAATACCCTAGAATGTTGGAAAATCAATATTTTTCGAATTCGAAATTTTCCCAATTTTTTAAATGAACTTTCTAGAATTTTCGCCTGTTTTATAATGCTTTTATCGTAAATTTCACATTTTCTCCAATTTTCATCTGAATTCGTCCATTTTCCCCCGATTTTCAAAAATATGTAAAWATTGATATTTTTCGATATTTTTCAGTTTTTTTTCATTGAAATCGTATTTTTGTGCAATTTTGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18513</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>60409</contig_pos>
        <strand>+</strand>
        <context>GTAAAWATTG[A/T]TATTTTTCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATCTGAATTCGTCCATTTTCCCCCGATTTTCAAAAATATGTAAATATTG</left_flank>
        <right_flank>TATTTTTCGATATTTTTCAGTTTTTTTTCATTGAAATCGTATTTTTGTGC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACCTCGTGTACTCCTCTCGGGAAAGAGGGGAATATGAATTTTCTCAGCACTTTTCGCTGGTTTTCTATTGATTTTCCCGACGAAATCAATGATTTCTTTTGGGAAAATTGATTTTTTGAGGTGTAAATCATCAGTTTCATCGTATTTAGCATTAAAAATAACCTAAAAATAGGGAATTTCTGTTGGAAATTCGGTTTTTTCTCGAGAAATTTGAAAATTGTGTCAGAATTTGAATTTTTCCCGTTTTTCCATTGAAATTGTCTATTTTTCCAAAATTTACATGTTTTCCGGTCATTATTTTCAGATTTGTCGCAGAAAAATACCCTAGAATGTTGGAAAATCAATATTTTTCGAATTCGAAATTTTCCCAATTTTTTAAATGAACTTTCTAGAATTTTCGCCTGTTTTATAATGCTTTTATCGTAAATTTCACATTTTCTCCAATTTTCATCTGAATTCGTCCATTTTCCCCCGATTTTCAAAAATATGTAAATATTGATATTTTTCGATATTTTTCAGTTTTTTTTCATTGAAATCGTATTTTTGTGCAATTTTGAATTGCAATTTTACCCTTTTTTTGTGTTCAACTTGAAAATTTTTTCCAATTTGCAGCATGCCAAAGTACTATTGCGACTACTGCGACACATTTCTGACGCACGACTCGCCGTCGGTGCGAAAAACACACAACGGGGGAAGGAAGCACAAGGATAACGTTAGAATGTTCTATCAGGTAGGATTTTCCTGGATTTTAAGGTAAAATATCCCAAAAAATTCGAAATTTTCCAGAAATGGATGGAAGACCAGGCGCAGAAGCTCGTCGATCAGACTGCGAGAGCATTTGCCACGAATCGAGTGAGTTTTCATTGATTTTTAGCTGAAAAATGACCCAAAATTGATAGATTTCGACCTAATTTTGCTATTTTTGACCTAAAAACTATCAAAAATCGCTAATTTCCAGATGCACGGCGCGGTGCCACGTACAACGATGGGAATGGCGCC</canonical>
            <polymorphic>CACCTCGTGTACTCCTCTCGGGAAAGAGGGGAATATGAATTTTCTCAGCACTTTTCGCTGGTTTTCTATTGATTTTCCCGACGAAATCAATGATTTCTTTTGGGAAAATTGATTTTTTGAGGTGTAAATCATCAGTTTCATCGTATTTAGCATTAAAAATAACCTAAAAATAGGGAATTTCTGTTGGAAATTCGGTTTTTTCTCGAGAAATTTGAAAATTGTGTCAGAATTTGAATTTTTCCCGTTTTTCCATTGAAATTGTCTATTTTTCCAAAATTTACATGTTTTCCGGTCATTATTTTCAGATTTGTCGCAGAAAAATACCCTAGAATGTTGGAAAATCAATATTTTTCGAATTCGAAATTTTCCCAATTTTTTAAATGAACTTTCTAGAATTTTCGCCTGTTTTATAATGCTTTTATCGTAAATTTCACATTTTCTCCAATTTTCATCTGAATTCGTCCATTTTCCCCCGATTTTCAAAAATATGTAAATATTGWTATTTTTCGATATTTTTCAGTTTTTTTTCATTGAAATCGTATTTTTGTGCAATTTTGAATTGCAATTTTACCCTTTTTTTGTGTTCAACTTGAAAATTTTTTCCAATTTGCAGCATGCCAAAGTACTATTGCGACTACTGCGACACATTTCTGACGCACGACTCGCCGTCGGTGCGAAAAACACACAACGGGGGAAGGAAGCACAAGGATAACGTTAGAATGTTCTATCAGGTAGGATTTTCCTGGATTTTAAGGTAAAATATCCCAAAAAATTCGAAATTTTCCAGAAATGGATGGAAGACCAGGCGCAGAAGCTCGTCGATCAGACTGCGAGAGCATTTGCCACGAATCGAGTGAGTTTTCATTGATTTTTAGCTGAAAAATGACCCAAAATTGATAGATTTCGACCTAATTTTGCTATTTTTGACCTAAAAACTATCAAAAATCGCTAATTTCCAGATGCACGGCGCGGTGCCACGTACAACGATGGGAATGGCGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAAAAATACCCTAGAATGTTG</pcr_primer_p1>
		<pcr_primer_p2>AATTCAAAATTGCACAAAAATAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGAAAAATACCCTAGAATGTTGGAAAATCAATATTTTTCGAATTCGAAATTTTCCCAATTTTTTAAATGAACTTTCTAGAATTTTCGCCTGTTTTATAATGCTTTTATCGTAAATTTCACATTTTCTCCAATTTTCATCTGAATTCGTCCATTTTCCCCCGATTTTCAAAAATATGTAAATATTGATATTTTTCGATATTTTTCAGTTTTTTTTCATTGAAATCGTATTTTTGTGCAATTTTGAATT</canonical_amplicon>
		<polymorphic_amplicon>CAGAAAAATACCCTAGAATGTTGGAAAATCAATATTTTTCGAATTCGAAATTTTCCCAATTTTTTAAATGAACTTTCTAGAATTTTCGCCTGTTTTATAATGCTTTTATCGTAAATTTCACATTTTCTCCAATTTTCATCTGAATTCGTCCATTTTCCCCCGATTTTCAAAAATATGTAAATATTGWTATTTTTCGATATTTTTCAGTTTTTTTTCATTGAAATCGTATTTTTGTGCAATTTTGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18516</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>60483</contig_pos>
        <strand>+</strand>
        <context>AATTTTACCC[G/T]TTTTTTGTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTTCATTGAAATCGTATTTTTGTGCAATTTTGAATTGCAATTTTACCC</left_flank>
        <right_flank>TTTTTTGTGTTCAACTTGAAAATTTTTTCCAATTTGCAGCATGCCAAAGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCCGACGAAATCAATGATTTCTTTTGGGAAAATTGATTTTTTGAGGTGTAAATCATCAGTTTCATCGTATTTAGCATTAAAAATAACCTAAAAATAGGGAATTTCTGTTGGAAATTCGGTTTTTTCTCGAGAAATTTGAAAATTGTGTCAGAATTTGAATTTTTCCCGTTTTTCCATTGAAATTGTCTATTTTTCCAAAATTTACATGTTTTCCGGTCATTATTTTCAGATTTGTCGCAGAAAAATACCCTAGAATGTTGGAAAATCAATATTTTTCGAATTCGAAATTTTCCCAATTTTTTAAATGAACTTTCTAGAATTTTCGCCTGTTTTATAATGCTTTTATCGTAAATTTCACATTTTCTCCAATTTTCATCTGAATTCGTCCATTTTCCCCCGATTTTCAAAAATATGTAAATATTGATATTTTTCGATATTTTTCAGTTTTTTTTCATTGAAATCGTATTTTTGTGCAATTTTGAATTGCAATTTTACCCTTTTTTTGTGTTCAACTTGAAAATTTTTTCCAATTTGCAGCATGCCAAAGTACTATTGCGACTACTGCGACACATTTCTGACGCACGACTCGCCGTCGGTGCGAAAAACACACAACGGGGGAAGGAAGCACAAGGATAACGTTAGAATGTTCTATCAGGTAGGATTTTCCTGGATTTTAAGGTAAAATATCCCAAAAAATTCGAAATTTTCCAGAAATGGATGGAAGACCAGGCGCAGAAGCTCGTCGATCAGACTGCGAGAGCATTTGCCACGAATCGAGTGAGTTTTCATTGATTTTTAGCTGAAAAATGACCCAAAATTGATAGATTTCGACCTAATTTTGCTATTTTTGACCTAAAAACTATCAAAAATCGCTAATTTCCAGATGCACGGCGCGGTGCCACGTACAACGATGGGAATGGCGCCGGTGCCACCGGTTGGTCACCATCCGATGATGGGCGGTCCACCAGGAATGCCAATGATGGCGCCACGTCCGTTCC</canonical>
            <polymorphic>TTCCCGACGAAATCAATGATTTCTTTTGGGAAAATTGATTTTTTGAGGTGTAAATCATCAGTTTCATCGTATTTAGCATTAAAAATAACCTAAAAATAGGGAATTTCTGTTGGAAATTCGGTTTTTTCTCGAGAAATTTGAAAATTGTGTCAGAATTTGAATTTTTCCCGTTTTTCCATTGAAATTGTCTATTTTTCCAAAATTTACATGTTTTCCGGTCATTATTTTCAGATTTGTCGCAGAAAAATACCCTAGAATGTTGGAAAATCAATATTTTTCGAATTCGAAATTTTCCCAATTTTTTAAATGAACTTTCTAGAATTTTCGCCTGTTTTATAATGCTTTTATCGTAAATTTCACATTTTCTCCAATTTTCATCTGAATTCGTCCATTTTCCCCCGATTTTCAAAAATATGTAAATATTGATATTTTTCGATATTTTTCAGTTTTTTTTCATTGAAATCGTATTTTTGTGCAATTTTGAATTGCAATTTTACCCKTTTTTTGTGTTCAACTTGAAAATTTTTTCCAATTTGCAGCATGCCAAAGTACTATTGCGACTACTGCGACACATTTCTGACGCACGACTCGCCGTCGGTGCGAAAAACACACAACGGGGGAAGGAAGCACAAGGATAACGTTAGAATGTTCTATCAGGTAGGATTTTCCTGGATTTTAAGGTAAAATATCCCAAAAAATTCGAAATTTTCCAGAAATGGATGGAAGACCAGGCGCAGAAGCTCGTCGATCAGACTGCGAGAGCATTTGCCACGAATCGAGTGAGTTTTCATTGATTTTTAGCTGAAAAATGACCCAAAATTGATAGATTTCGACCTAATTTTGCTATTTTTGACCTAAAAACTATCAAAAATCGCTAATTTCCAGATGCACGGCGCGGTGCCACGTACAACGATGGGAATGGCGCCGGTGCCACCGGTTGGTCACCATCCGATGATGGGCGGTCCACCAGGAATGCCAATGATGGCGCCACGTCCGTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTGTTTTATAATGCTTTTATCG</pcr_primer_p1>
		<pcr_primer_p2>CAGAAATGTGTCGCAGTAGTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CCTGTTTTATAATGCTTTTATCGTAAATTTCACATTTTCTCCAATTTTCATCTGAATTCGTCCATTTTCCCCCGATTTTCAAAAATATGTAAATATTGATATTTTTCGATATTTTTCAGTTTTTTTTCATTGAAATCGTATTTTTGTGCAATTTTGAATTGCAATTTTACCCTTTTTTTGTGTTCAACTTGAAAATTTTTTCCAATTTGCAGCATGCCAAAGTACTATTGCGACTACTGCGACACATTTCTG</canonical_amplicon>
		<polymorphic_amplicon>CCTGTTTTATAATGCTTTTATCGTAAATTTCACATTTTCTCCAATTTTCATCTGAATTCGTCCATTTTCCCCCGATTTTCAAAAATATGTAAATATTGATATTTTTCGATATTTTTCAGTTTTTTTTCATTGAAATCGTATTTTTGTGCAATTTTGAATTGCAATTTTACCCKTTTTTTGTGTTCAACTTGAAAATTTTTTCCAATTTGCAGCATGCCAAAGTACTATTGCGACTACTGCGACACATTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18517</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>60505</contig_pos>
        <strand>+</strand>
        <context>CAACTTGAAA[A/T]TTTTTTCCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTGCAATTTTGAATTGCAATTTTACCCTTTTTTTGTGTTCAACTTGAAA</left_flank>
        <right_flank>TTTTTTCCAATTTGCAGCATGCCAAAGTACTATTGCGACTACTGCGACAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTGGGAAAATTGATTTTTTGAGGTGTAAATCATCAGTTTCATCGTATTTAGCATTAAAAATAACCTAAAAATAGGGAATTTCTGTTGGAAATTCGGTTTTTTCTCGAGAAATTTGAAAATTGTGTCAGAATTTGAATTTTTCCCGTTTTTCCATTGAAATTGTCTATTTTTCCAAAATTTACATGTTTTCCGGTCATTATTTTCAGATTTGTCGCAGAAAAATACCCTAGAATGTTGGAAAATCAATATTTTTCGAATTCGAAATTTTCCCAATTTTTTAAATGAACTTTCTAGAATTTTCGCCTGTTTTATAATGCTTTTATCGTAAATTTCACATTTTCTCCAATTTTCATCTGAATTCGTCCATTTTCCCCCGATTTTCAAAAATATGTAAATATTGATATTTTTCGATATTTTTCAGTTTTTTTTCATTGAAATCGTATTTTTGTGCAATTTTGAATTGCAATTTTACCCTTTTTTTGTGTTCAACTTGAAAATTTTTTCCAATTTGCAGCATGCCAAAGTACTATTGCGACTACTGCGACACATTTCTGACGCACGACTCGCCGTCGGTGCGAAAAACACACAACGGGGGAAGGAAGCACAAGGATAACGTTAGAATGTTCTATCAGGTAGGATTTTCCTGGATTTTAAGGTAAAATATCCCAAAAAATTCGAAATTTTCCAGAAATGGATGGAAGACCAGGCGCAGAAGCTCGTCGATCAGACTGCGAGAGCATTTGCCACGAATCGAGTGAGTTTTCATTGATTTTTAGCTGAAAAATGACCCAAAATTGATAGATTTCGACCTAATTTTGCTATTTTTGACCTAAAAACTATCAAAAATCGCTAATTTCCAGATGCACGGCGCGGTGCCACGTACAACGATGGGAATGGCGCCGGTGCCACCGGTTGGTCACCATCCGATGATGGGCGGTCCACCAGGAATGCCAATGATGGCGCCACGTCCGTTCCCAGGACCGCCAGTTGGATTTCC</canonical>
            <polymorphic>CTTTTGGGAAAATTGATTTTTTGAGGTGTAAATCATCAGTTTCATCGTATTTAGCATTAAAAATAACCTAAAAATAGGGAATTTCTGTTGGAAATTCGGTTTTTTCTCGAGAAATTTGAAAATTGTGTCAGAATTTGAATTTTTCCCGTTTTTCCATTGAAATTGTCTATTTTTCCAAAATTTACATGTTTTCCGGTCATTATTTTCAGATTTGTCGCAGAAAAATACCCTAGAATGTTGGAAAATCAATATTTTTCGAATTCGAAATTTTCCCAATTTTTTAAATGAACTTTCTAGAATTTTCGCCTGTTTTATAATGCTTTTATCGTAAATTTCACATTTTCTCCAATTTTCATCTGAATTCGTCCATTTTCCCCCGATTTTCAAAAATATGTAAATATTGATATTTTTCGATATTTTTCAGTTTTTTTTCATTGAAATCGTATTTTTGTGCAATTTTGAATTGCAATTTTACCCTTTTTTTGTGTTCAACTTGAAAWTTTTTTCCAATTTGCAGCATGCCAAAGTACTATTGCGACTACTGCGACACATTTCTGACGCACGACTCGCCGTCGGTGCGAAAAACACACAACGGGGGAAGGAAGCACAAGGATAACGTTAGAATGTTCTATCAGGTAGGATTTTCCTGGATTTTAAGGTAAAATATCCCAAAAAATTCGAAATTTTCCAGAAATGGATGGAAGACCAGGCGCAGAAGCTCGTCGATCAGACTGCGAGAGCATTTGCCACGAATCGAGTGAGTTTTCATTGATTTTTAGCTGAAAAATGACCCAAAATTGATAGATTTCGACCTAATTTTGCTATTTTTGACCTAAAAACTATCAAAAATCGCTAATTTCCAGATGCACGGCGCGGTGCCACGTACAACGATGGGAATGGCGCCGGTGCCACCGGTTGGTCACCATCCGATGATGGGCGGTCCACCAGGAATGCCAATGATGGCGCCACGTCCGTTCCCAGGACCGCCAGTTGGATTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>319 176 139 80 79 41 33 32 29 20 19 13 7 7 6</canonical_bands>
                <polymorphic_bands>319 315 80 79 41 33 32 29 20 19 13 7 7 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>166 146 114 95 80 69 40 33 31 23 23 20 19 18 17 13 12 11 10 10 9 8 7 7 7 6 6</canonical_bands>
                <polymorphic_bands>166 146 114 95 80 69 41 40 33 23 23 20 19 18 17 13 12 11 10 9 8 7 7 7 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTGTTTTATAATGCTTTTATCG</pcr_primer_p1>
		<pcr_primer_p2>CAGAAATGTGTCGCAGTAGTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CCTGTTTTATAATGCTTTTATCGTAAATTTCACATTTTCTCCAATTTTCATCTGAATTCGTCCATTTTCCCCCGATTTTCAAAAATATGTAAATATTGATATTTTTCGATATTTTTCAGTTTTTTTTCATTGAAATCGTATTTTTGTGCAATTTTGAATTGCAATTTTACCCTTTTTTTGTGTTCAACTTGAAAATTTTTTCCAATTTGCAGCATGCCAAAGTACTATTGCGACTACTGCGACACATTTCTG</canonical_amplicon>
		<polymorphic_amplicon>CCTGTTTTATAATGCTTTTATCGTAAATTTCACATTTTCTCCAATTTTCATCTGAATTCGTCCATTTTCCCCCGATTTTCAAAAATATGTAAATATTGATATTTTTCGATATTTTTCAGTTTTTTTTCATTGAAATCGTATTTTTGTGCAATTTTGAATTGCAATTTTACCCTTTTTTTGTGTTCAACTTGAAAWTTTTTTCCAATTTGCAGCATGCCAAAGTACTATTGCGACTACTGCGACACATTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18518</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>60592</contig_pos>
        <strand>+</strand>
        <context>TGCGAAAAAC[A/G]CACAACGGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACTACTGCGACACATTTCTGACGCACGACTCGCCGTCGGTGCGAAAAAC</left_flank>
        <right_flank>CACAACGGGGGAAGGAAGCACAAGGATAACGTTAGAATGTTCTATCAGGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGAAATTCGGTTTTTTCTCGAGAAATTTGAAAATTGTGTCAGAATTTGAATTTTTCCCGTTTTTCCATTGAAATTGTCTATTTTTCCAAAATTTACATGTTTTCCGGTCATTATTTTCAGATTTGTCGCAGAAAAATACCCTAGAATGTTGGAAAATCAATATTTTTCGAATTCGAAATTTTCCCAATTTTTTAAATGAACTTTCTAGAATTTTCGCCTGTTTTATAATGCTTTTATCGTAAATTTCACATTTTCTCCAATTTTCATCTGAATTCGTCCATTTTCCCCCGATTTTCAAAAATATGTAAATATTGATATTTTTCGATATTTTTCAGTTTTTTTTCATTGAAATCGTATTTTTGTGCAATTTTGAATTGCAATTTTACCCTTTTTTTGTGTTCAACTTGAAAATTTTTTCCAATTTGCAGCATGCCAAAGTACTATTGCGACTACTGCGACACATTTCTGACGCACGACTCGCCGTCGGTGCGAAAAACACACAACGGGGGAAGGAAGCACAAGGATAACGTTAGAATGTTCTATCAGGTAGGATTTTCCTGGATTTTAAGGTAAAATATCCCAAAAAATTCGAAATTTTCCAGAAATGGATGGAAGACCAGGCGCAGAAGCTCGTCGATCAGACTGCGAGAGCATTTGCCACGAATCGAGTGAGTTTTCATTGATTTTTAGCTGAAAAATGACCCAAAATTGATAGATTTCGACCTAATTTTGCTATTTTTGACCTAAAAACTATCAAAAATCGCTAATTTCCAGATGCACGGCGCGGTGCCACGTACAACGATGGGAATGGCGCCGGTGCCACCGGTTGGTCACCATCCGATGATGGGCGGTCCACCAGGAATGCCAATGATGGCGCCACGTCCGTTCCCAGGACCGCCAGTTGGATTTCCGGGAGCTCCAGGGGTAGGTTTGGTGCCTAAATGGCTGAAAAGTGATAGATTTGGACCAAATTGAGCAAAAAATTGCTCTAAATTGAC</canonical>
            <polymorphic>TTGGAAATTCGGTTTTTTCTCGAGAAATTTGAAAATTGTGTCAGAATTTGAATTTTTCCCGTTTTTCCATTGAAATTGTCTATTTTTCCAAAATTTACATGTTTTCCGGTCATTATTTTCAGATTTGTCGCAGAAAAATACCCTAGAATGTTGGAAAATCAATATTTTTCGAATTCGAAATTTTCCCAATTTTTTAAATGAACTTTCTAGAATTTTCGCCTGTTTTATAATGCTTTTATCGTAAATTTCACATTTTCTCCAATTTTCATCTGAATTCGTCCATTTTCCCCCGATTTTCAAAAATATGTAAATATTGATATTTTTCGATATTTTTCAGTTTTTTTTCATTGAAATCGTATTTTTGTGCAATTTTGAATTGCAATTTTACCCTTTTTTTGTGTTCAACTTGAAAATTTTTTCCAATTTGCAGCATGCCAAAGTACTATTGCGACTACTGCGACACATTTCTGACGCACGACTCGCCGTCGGTGCGAAAAACRCACAACGGGGGAAGGAAGCACAAGGATAACGTTAGAATGTTCTATCAGGTAGGATTTTCCTGGATTTTAAGGTAAAATATCCCAAAAAATTCGAAATTTTCCAGAAATGGATGGAAGACCAGGCGCAGAAGCTCGTCGATCAGACTGCGAGAGCATTTGCCACGAATCGAGTGAGTTTTCATTGATTTTTAGCTGAAAAATGACCCAAAATTGATAGATTTCGACCTAATTTTGCTATTTTTGACCTAAAAACTATCAAAAATCGCTAATTTCCAGATGCACGGCGCGGTGCCACGTACAACGATGGGAATGGCGCCGGTGCCACCGGTTGGTCACCATCCGATGATGGGCGGTCCACCAGGAATGCCAATGATGGCGCCACGTCCGTTCCCAGGACCGCCAGTTGGATTTCCGGGAGCTCCAGGGGTAGGTTTGGTGCCTAAATGGCTGAAAAGTGATAGATTTGGACCAAATTGAGCAAAAAATTGCTCTAAATTGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>210 142 116 108 62 57 43 40 34 27 24 22 19 18 16 13 11 11 10 9 3 3 2</canonical_bands>
                <polymorphic_bands>210 142 116 108 62 57 43 40 34 27 24 22 19 18 16 13 11 11 11 10 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAAGTACTATTGCGACTACTG</pcr_primer_p1>
		<pcr_primer_p2>CAATGAAAACTCACTCGATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAAAGTACTATTGCGACTACTGCGACACATTTCTGACGCACGACTCGCCGTCGGTGCGAAAAACACACAACGGGGGAAGGAAGCACAAGGATAACGTTAGAATGTTCTATCAGGTAGGATTTTCCTGGATTTTAAGGTAAAATATCCCAAAAAATTCGAAATTTTCCAGAAATGGATGGAAGACCAGGCGCAGAAGCTCGTCGATCAGACTGCGAGAGCATTTGCCACGAATCGAGTGAGTTTTCATTG</canonical_amplicon>
		<polymorphic_amplicon>CCAAAGTACTATTGCGACTACTGCGACACATTTCTGACGCACGACTCGCCGTCGGTGCGAAAAACRCACAACGGGGGAAGGAAGCACAAGGATAACGTTAGAATGTTCTATCAGGTAGGATTTTCCTGGATTTTAAGGTAAAATATCCCAAAAAATTCGAAATTTTCCAGAAATGGATGGAAGACCAGGCGCAGAAGCTCGTCGATCAGACTGCGAGAGCATTTGCCACGAATCGAGTGAGTTTTCATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18519</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>60750</contig_pos>
        <strand>+</strand>
        <context>CGAGAGCATT[C/T]GCCACGAATC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGATGGAAGACCAGGCGCAGAAGCTCGTCGATCAGACTGCGAGAGCATT</left_flank>
        <right_flank>GCCACGAATCGAGTGAGTTTTCATTGATTTTTAGCTGAAAAATGACCCAA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAATATTTTTCGAATTCGAAATTTTCCCAATTTTTTAAATGAACTTTCTAGAATTTTCGCCTGTTTTATAATGCTTTTATCGTAAATTTCACATTTTCTCCAATTTTCATCTGAATTCGTCCATTTTCCCCCGATTTTCAAAAATATGTAAATATTGATATTTTTCGATATTTTTCAGTTTTTTTTCATTGAAATCGTATTTTTGTGCAATTTTGAATTGCAATTTTACCCTTTTTTTGTGTTCAACTTGAAAATTTTTTCCAATTTGCAGCATGCCAAAGTACTATTGCGACTACTGCGACACATTTCTGACGCACGACTCGCCGTCGGTGCGAAAAACACACAACGGGGGAAGGAAGCACAAGGATAACGTTAGAATGTTCTATCAGGTAGGATTTTCCTGGATTTTAAGGTAAAATATCCCAAAAAATTCGAAATTTTCCAGAAATGGATGGAAGACCAGGCGCAGAAGCTCGTCGATCAGACTGCGAGAGCATTTGCCACGAATCGAGTGAGTTTTCATTGATTTTTAGCTGAAAAATGACCCAAAATTGATAGATTTCGACCTAATTTTGCTATTTTTGACCTAAAAACTATCAAAAATCGCTAATTTCCAGATGCACGGCGCGGTGCCACGTACAACGATGGGAATGGCGCCGGTGCCACCGGTTGGTCACCATCCGATGATGGGCGGTCCACCAGGAATGCCAATGATGGCGCCACGTCCGTTCCCAGGACCGCCAGTTGGATTTCCGGGAGCTCCAGGGGTAGGTTTGGTGCCTAAATGGCTGAAAAGTGATAGATTTGGACCAAATTGAGCAAAAAATTGCTCTAAATTGACATATTCTAGCTGAAATTGACCCTAATCTATGTAGAAACTCATGTTGGTACTTCTGGGCAGTAGCAAAATTTTAATTTTCCTTAATTTTTGATATTTTTTGGTTGATTTTCATCAAAAATGGCTCTAACAAAGTCGAAAATCCGGCATTTTAAGCATAA</canonical>
            <polymorphic>TCAATATTTTTCGAATTCGAAATTTTCCCAATTTTTTAAATGAACTTTCTAGAATTTTCGCCTGTTTTATAATGCTTTTATCGTAAATTTCACATTTTCTCCAATTTTCATCTGAATTCGTCCATTTTCCCCCGATTTTCAAAAATATGTAAATATTGATATTTTTCGATATTTTTCAGTTTTTTTTCATTGAAATCGTATTTTTGTGCAATTTTGAATTGCAATTTTACCCTTTTTTTGTGTTCAACTTGAAAATTTTTTCCAATTTGCAGCATGCCAAAGTACTATTGCGACTACTGCGACACATTTCTGACGCACGACTCGCCGTCGGTGCGAAAAACACACAACGGGGGAAGGAAGCACAAGGATAACGTTAGAATGTTCTATCAGGTAGGATTTTCCTGGATTTTAAGGTAAAATATCCCAAAAAATTCGAAATTTTCCAGAAATGGATGGAAGACCAGGCGCAGAAGCTCGTCGATCAGACTGCGAGAGCATTYGCCACGAATCGAGTGAGTTTTCATTGATTTTTAGCTGAAAAATGACCCAAAATTGATAGATTTCGACCTAATTTTGCTATTTTTGACCTAAAAACTATCAAAAATCGCTAATTTCCAGATGCACGGCGCGGTGCCACGTACAACGATGGGAATGGCGCCGGTGCCACCGGTTGGTCACCATCCGATGATGGGCGGTCCACCAGGAATGCCAATGATGGCGCCACGTCCGTTCCCAGGACCGCCAGTTGGATTTCCGGGAGCTCCAGGGGTAGGTTTGGTGCCTAAATGGCTGAAAAGTGATAGATTTGGACCAAATTGAGCAAAAAATTGCTCTAAATTGACATATTCTAGCTGAAATTGACCCTAATCTATGTAGAAACTCATGTTGGTACTTCTGGGCAGTAGCAAAATTTTAATTTTCCTTAATTTTTGATATTTTTTGGTTGATTTTCATCAAAAATGGCTCTAACAAAGTCGAAAATCCGGCATTTTAAGCATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCACAAGGATAACGTTAGAA</pcr_primer_p1>
		<pcr_primer_p2>GCGATTTTTGATAGTTTTTAGGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAGCACAAGGATAACGTTAGAATGTTCTATCAGGTAGGATTTTCCTGGATTTTAAGGTAAAATATCCCAAAAAATTCGAAATTTTCCAGAAATGGATGGAAGACCAGGCGCAGAAGCTCGTCGATCAGACTGCGAGAGCATTTGCCACGAATCGAGTGAGTTTTCATTGATTTTTAGCTGAAAAATGACCCAAAATTGATAGATTTCGACCTAATTTTGCTATTTTTGACCTAAAAACTATCAAAAATCGC</canonical_amplicon>
		<polymorphic_amplicon>AAGCACAAGGATAACGTTAGAATGTTCTATCAGGTAGGATTTTCCTGGATTTTAAGGTAAAATATCCCAAAAAATTCGAAATTTTCCAGAAATGGATGGAAGACCAGGCGCAGAAGCTCGTCGATCAGACTGCGAGAGCATTYGCCACGAATCGAGTGAGTTTTCATTGATTTTTAGCTGAAAAATGACCCAAAATTGATAGATTTCGACCTAATTTTGCTATTTTTGACCTAAAAACTATCAAAAATCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18539</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>78008</contig_pos>
        <strand>+</strand>
        <context>TCTGTCTGTG[C/T]TTCTTGCCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATATGTATTTCCCCGTTTTCTTCAAAATGGATCCTTGTGTCTGTCTGTG</left_flank>
        <right_flank>TTCTTGCCATCCGGATATCTGCCTTTTTGTTAATTTTTGCATTCTTCCAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGGCCCACGATCCAAGGGTACGTCGAAAAAGGGTACATCGAGGGTACATCGAGTTCTTANGGTACATTGGTTCTGANGGTACATGGGATCTTAGACTGTAAGGCGTTTTAGCCTAAGCCTATAATTTTGAGCAGAAATCTAAATAGTATGTATAAAAATATTGATTGACTTTTTTTTGTCCACCTACATGTACCGAACAATCCAATGTACCCTTGGAACCAATGTACACTAAGAACTCGATGCACCCTTTTTCGATGTACCCTTGGATACTGGGCCTGGCTACTGTAAGAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCATATTATCAGAAATCATCTGACCACTTTTTGATATCTCTTACAGGAACCAAGGTGAACTAGGTGAAAGTTAACAGTGCTTTTCAGAATTTCAAATAAATTTAAACATTTTTTGAAACAGTAAATATGTATTTCCCCGTTTTCTTCAAAATGGATCCTTGTGTCTGTCTGTGCTTCTTGCCATCCGGATATCTGCCTTTTTGTTAATTTTTGCATTCTTCCATTCGGTTTGAAGTAATTGAATCTAAAAATGTTTCAAGTTTATGCTAAAATTTCGGATCAGCAATTTTTTGATTAAATTTATCTTCGTTACTGTGAAAGATAACAAAAAGTGATCAACTGATAAAATGTTTATCATATTATCAGTAACATATTATCAGTTGACAACGTTTTGGTATCGTTTATAGGACCTGAGATAAATTGGCTCAAAGTACGGTGGCACCATATCCGAGGTTTCGCTATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATCTACTTCGGTTCCTGTGAGAGATAACAAACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCGGAATACAGTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATTTTTCAATTTTTT</canonical>
            <polymorphic>CTGGGCCCACGATCCAAGGGTACGTCGAAAAAGGGTACATCGAGGGTACATCGAGTTCTTANGGTACATTGGTTCTGANGGTACATGGGATCTTAGACTGTAAGGCGTTTTAGCCTAAGCCTATAATTTTGAGCAGAAATCTAAATAGTATGTATAAAAATATTGATTGACTTTTTTTTGTCCACCTACATGTACCGAACAATCCAATGTACCCTTGGAACCAATGTACACTAAGAACTCGATGCACCCTTTTTCGATGTACCCTTGGATACTGGGCCTGGCTACTGTAAGAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCATATTATCAGAAATCATCTGACCACTTTTTGATATCTCTTACAGGAACCAAGGTGAACTAGGTGAAAGTTAACAGTGCTTTTCAGAATTTCAAATAAATTTAAACATTTTTTGAAACAGTAAATATGTATTTCCCCGTTTTCTTCAAAATGGATCCTTGTGTCTGTCTGTGYTTCTTGCCATCCGGATATCTGCCTTTTTGTTAATTTTTGCATTCTTCCATTCGGTTTGAAGTAATTGAATCTAAAAATGTTTCAAGTTTATGCTAAAATTTCGGATCAGCAATTTTTTGATTAAATTTATCTTCGTTACTGTGAAAGATAACAAAAAGTGATCAACTGATAAAATGTTTATCATATTATCAGTAACATATTATCAGTTGACAACGTTTTGGTATCGTTTATAGGACCTGAGATAAATTGGCTCAAAGTACGGTGGCACCATATCCGAGGTTTCGCTATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATCTACTTCGGTTCCTGTGAGAGATAACAAACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCGGAATACAGTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATTTTTCAATTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAAATATGTATTTCCCCGTTTT</pcr_primer_p1>
		<pcr_primer_p2>CGAAATTTTAGCATAAACTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>157</pcr_amplicon_size>
		<canonical_amplicon>GTAAATATGTATTTCCCCGTTTTCTTCAAAATGGATCCTTGTGTCTGTCTGTGCTTCTTGCCATCCGGATATCTGCCTTTTTGTTAATTTTTGCATTCTTCCATTCGGTTTGAAGTAATTGAATCTAAAAATGTTTCAAGTTTATGCTAAAATTTCG</canonical_amplicon>
		<polymorphic_amplicon>GTAAATATGTATTTCCCCGTTTTCTTCAAAATGGATCCTTGTGTCTGTCTGTGYTTCTTGCCATCCGGATATCTGCCTTTTTGTTAATTTTTGCATTCTTCCATTCGGTTTGAAGTAATTGAATCTAAAAATGTTTCAAGTTTATGCTAAAATTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18540</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>78055</contig_pos>
        <strand>+</strand>
        <context>TTGCATTCTT[C/T]CATTCGGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGCTTCTTGCCATCCGGATATCTGCCTTTTTGTTAATTTTTGCATTCTT</left_flank>
        <right_flank>CATTCGGTTTGAAGTAATTGAATCTAAAAATGTTTCAAGTTTATGCTAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATCGAGTTCTTANGGTACATTGGTTCTGANGGTACATGGGATCTTAGACTGTAAGGCGTTTTAGCCTAAGCCTATAATTTTGAGCAGAAATCTAAATAGTATGTATAAAAATATTGATTGACTTTTTTTTGTCCACCTACATGTACCGAACAATCCAATGTACCCTTGGAACCAATGTACACTAAGAACTCGATGCACCCTTTTTCGATGTACCCTTGGATACTGGGCCTGGCTACTGTAAGAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCATATTATCAGAAATCATCTGACCACTTTTTGATATCTCTTACAGGAACCAAGGTGAACTAGGTGAAAGTTAACAGTGCTTTTCAGAATTTCAAATAAATTTAAACATTTTTTGAAACAGTAAATATGTATTTCCCCGTTTTCTTCAAAATGGATCCTTGTGTCTGTCTGTGCTTCTTGCCATCCGGATATCTGCCTTTTTGTTAATTTTTGCATTCTTCCATTCGGTTTGAAGTAATTGAATCTAAAAATGTTTCAAGTTTATGCTAAAATTTCGGATCAGCAATTTTTTGATTAAATTTATCTTCGTTACTGTGAAAGATAACAAAAAGTGATCAACTGATAAAATGTTTATCATATTATCAGTAACATATTATCAGTTGACAACGTTTTGGTATCGTTTATAGGACCTGAGATAAATTGGCTCAAAGTACGGTGGCACCATATCCGAGGTTTCGCTATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATCTACTTCGGTTCCTGTGAGAGATAACAAACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCGGAATACAGTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATTTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTCGTGCAAATTC</canonical>
            <polymorphic>ACATCGAGTTCTTANGGTACATTGGTTCTGANGGTACATGGGATCTTAGACTGTAAGGCGTTTTAGCCTAAGCCTATAATTTTGAGCAGAAATCTAAATAGTATGTATAAAAATATTGATTGACTTTTTTTTGTCCACCTACATGTACCGAACAATCCAATGTACCCTTGGAACCAATGTACACTAAGAACTCGATGCACCCTTTTTCGATGTACCCTTGGATACTGGGCCTGGCTACTGTAAGAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCATATTATCAGAAATCATCTGACCACTTTTTGATATCTCTTACAGGAACCAAGGTGAACTAGGTGAAAGTTAACAGTGCTTTTCAGAATTTCAAATAAATTTAAACATTTTTTGAAACAGTAAATATGTATTTCCCCGTTTTCTTCAAAATGGATCCTTGTGTCTGTCTGTGCTTCTTGCCATCCGGATATCTGCCTTTTTGTTAATTTTTGCATTCTTYCATTCGGTTTGAAGTAATTGAATCTAAAAATGTTTCAAGTTTATGCTAAAATTTCGGATCAGCAATTTTTTGATTAAATTTATCTTCGTTACTGTGAAAGATAACAAAAAGTGATCAACTGATAAAATGTTTATCATATTATCAGTAACATATTATCAGTTGACAACGTTTTGGTATCGTTTATAGGACCTGAGATAAATTGGCTCAAAGTACGGTGGCACCATATCCGAGGTTTCGCTATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATCTACTTCGGTTCCTGTGAGAGATAACAAACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCGGAATACAGTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATTTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTCGTGCAAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAAATATGTATTTCCCCGTTTT</pcr_primer_p1>
		<pcr_primer_p2>CGAAATTTTAGCATAAACTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>157</pcr_amplicon_size>
		<canonical_amplicon>GTAAATATGTATTTCCCCGTTTTCTTCAAAATGGATCCTTGTGTCTGTCTGTGCTTCTTGCCATCCGGATATCTGCCTTTTTGTTAATTTTTGCATTCTTCCATTCGGTTTGAAGTAATTGAATCTAAAAATGTTTCAAGTTTATGCTAAAATTTCG</canonical_amplicon>
		<polymorphic_amplicon>GTAAATATGTATTTCCCCGTTTTCTTCAAAATGGATCCTTGTGTCTGTCTGTGCTTCTTGCCATCCGGATATCTGCCTTTTTGTTAATTTTTGCATTCTTYCATTCGGTTTGAAGTAATTGAATCTAAAAATGTTTCAAGTTTATGCTAAAATTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18541</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>78573</contig_pos>
        <strand>+</strand>
        <context>AATTCTCAAT[A/C]TTTKAGACAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTCTGTTTTTTTTCCATTTTTCGTGCAAATTCATTTGGAAATTCTCAAT</left_flank>
        <right_flank>TTTGAGACACACCAAAATAGACAAACTTTATCAAATTTTAGGGCTTCACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAATCTAAAAATGTTTCAAGTTTATGCTAAAATTTCGGATCAGCAATTTTTTGATTAAATTTATCTTCGTTACTGTGAAAGATAACAAAAAGTGATCAACTGATAAAATGTTTATCATATTATCAGTAACATATTATCAGTTGACAACGTTTTGGTATCGTTTATAGGACCTGAGATAAATTGGCTCAAAGTACGGTGGCACCATATCCGAGGTTTCGCTATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATCTACTTCGGTTCCTGTGAGAGATAACAAACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCGGAATACAGTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATTTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTCGTGCAAATTCATTTGGAAATTCTCAATATTTGAGACACACCAAAATAGACAAACTTTATCAAATTTTAGGGCTTCACTAAAACTAAAAATTTCCAAAATCCTAATCCCTAAATTGCCAAAATTTAGTAATAACATCAGTTACGGAATTCGCCTAGACGACTTTTGTAAGGTTTCCAAATCTTAGAAAATCTCGAAATTTCCTGTTTCCTGATGACCCGGAAACTTCTAGAAGCCCCATGCGTTTTCAGATCCGCCCCCACTTGGGTTCAAGCGAGGGGGTCAGAAAGCGCAGTAAATTTAGGAAAAATTCTAAATTCGCTGCCGAATTTCGTTGGCTGAGTTTCACAGTTTTAAATGAAGAAAAGCGCGCCTTGCAGCCAGTTGATTTTGAAGAAATAGATCATGATCTAGAGCAAACCCGCGTCCACTTTAAAATTATTAAATTTCTTTTGGCCTACGAGTTTGCTGGGGCGCGCTTTCTGACGCCCCTCGCTTGAACCCAAGCCCCCACTCGAAATTTTTGATCTA</canonical>
            <polymorphic>TGAATCTAAAAATGTTTCAAGTTTATGCTAAAATTTCGGATCAGCAATTTTTTGATTAAATTTATCTTCGTTACTGTGAAAGATAACAAAAAGTGATCAACTGATAAAATGTTTATCATATTATCAGTAACATATTATCAGTTGACAACGTTTTGGTATCGTTTATAGGACCTGAGATAAATTGGCTCAAAGTACGGTGGCACCATATCCGAGGTTTCGCTATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATCTACTTCGGTTCCTGTGAGAGATAACAAACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCGGAATACAGTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATTTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTCGTGCAAATTCATTTGGAAATTCTCAATMTTTGAGACACACCAAAATAGACAAACTTTATCAAATTTTAGGGCTTCACTAAAACTAAAAATTTCCAAAATCCTAATCCCTAAATTGCCAAAATTTAGTAATAACATCAGTTACGGAATTCGCCTAGACGACTTTTGTAAGGTTTCCAAATCTTAGAAAATCTCGAAATTTCCTGTTTCCTGATGACCCGGAAACTTCTAGAAGCCCCATGCGTTTTCAGATCCGCCCCCACTTGGGTTCAAGCGAGGGGGTCAGAAAGCGCAGTAAATTTAGGAAAAATTCTAAATTCGCTGCCGAATTTCGTTGGCTGAGTTTCACAGTTTTAAATGAAGAAAAGCGCGCCTTGCAGCCAGTTGATTTTGAAGAAATAGATCATGATCTAGAGCAAACCCGCGTCCACTTTAAAATTATTAAATTTCTTTTGGCCTACGAGTTTGCTGGGGCGCGCTTTCTGACGCCCCTCGCTTGAACCCAAGCCCCCACTCGAAATTTTTGATCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAACCAAGAAAAATGGGTTC</pcr_primer_p1>
		<pcr_primer_p2>CGAATTCCGTAACTGATGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATTTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTCGTGCAAATTCATTTGGAAATTCTCAATATTTGAGACACACCAAAATAGACAAACTTTATCAAATTTTAGGGCTTCACTAAAACTAAAAATTTCCAAAATCCTAATCCCTAAATTGCCAAAATTTAGTAATAACATCAGTTACGGAATTCG</canonical_amplicon>
		<polymorphic_amplicon>GTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATTTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTCGTGCAAATTCATTTGGAAATTCTCAATMTTTGAGACACACCAAAATAGACAAACTTTATCAAATTTTAGGGCTTCACTAAAACTAAAAATTTCCAAAATCCTAATCCCTAAATTGCCAAAATTTAGTAATAACATCAGTTACGGAATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18613</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>65979</contig_pos>
        <strand></strand>
        <context>TCACTCTCAG[C/A]CAACGGTTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATCTTTATCAAATATGACTCACCTTCGAAACTGTCATCTTTCACTCTCAG</left_flank>
        <right_flank>CAACGGTTCCGCCCCCACTCAAACAACTGTTTATCTATTGGATTAACGAT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCCCTTTAAATGTACCAATAACCAAATTTGCCAAACATTAAAAGCTTAATTCTCACTTTTCTCACATTTTTGCCCCGTGGTGACCACGATCGTTTGCACACGGTTGCTTTTTTCTAATCGATTTGCTGAGTGGGAGGGAATTCATAAGGATTTTCGGGTGGTTATTAGAGTTACGGTATATCTATTGGAGCGAAGGCTCTAGTTCACCACCTCGAAGGGCTTGTATGAACGAATTGTCGCGAAAAAATTAATTTCTTCATTTCCTGCATCTTTAATATTATCCCTAAACTGTTTTTTTTTCTTTCCAATTTTTCTTCAAAACGGTCATGTCTCCGAACGCCTTCAAATTTAGGTTAAAAATATGTTAATCCAGATGATCTCCAAATCTCAATCTCCATTTTTCAGATGTTCCTGTCCTAAGACTAAAAAAAACAACAGGAACATCTTATCTTTATCAAATATGACTCACCTTCGAAACTGTCATCTTTCACTCTCAGCCAACGGTTCCGCCCCCACTCAAACAACTGTTTATCTATTGGATTAACGATTAGCTCTGAAGATTTTGAAAAAGTGAAGCTCAGAGGCTCAGATTTTCAAGTATTCCATCGTTCCGCATCCTTTCTCGTGCAAAAAGTATTCCTTCTCTTCGTAGAATTTCAAATTAAAATTAATAAAGTGTAAGTTCACCAACTTCCTCTTCAATTCTCGTGTTTTATAACTTTCTCACACTCCTTTCACTTCATCTTTGTCCACTTCTTCTTCTTCTTCTTCTTATGATGTCGTTATTTTCAAAATGTCCTTTTTCATTCTCTTGGGGTCTCCAGATTTATTCGCCAGACTTACTTACAAGCTTTAGAATTTCAATTTGTTCAGCTTGCTTTCCCTAGATTCAAATTTTCGAAAATTCTCCCAAATACAAGGATCGACAGATTGCAAAACGATTGGTGAAAGAAGAAGGTTAGAAATCGAGATGACCTTCGTTTTCCTTTTCCGGGATG</canonical>
            <polymorphic>CATCCCTTTAAATGTACCAATAACCAAATTTGCCAAACATTAAAAGCTTAATTCTCACTTTTCTCACATTTTTGCCCCGTGGTGACCACGATCGTTTGCACACGGTTGCTTTTTTCTAATCGATTTGCTGAGTGGGAGGGAATTCATAAGGATTTTCGGGTGGTTATTAGAGTTACGGTATATCTATTGGAGCGAAGGCTCTAGTTCACCACCTCGAAGGGCTTGTATGAACGAATTGTCGCGAAAAAATTAATTTCTTCATTTCCTGCATCTTTAATATTATCCCTAAACTGTTTTTTTTTCTTTCCAATTTTTCTTCAAAACGGTCATGTCTCCGAACGCCTTCAAATTTAGGTTAAAAATATGTTAATCCAGATGATCTCCAAATCTCAATCTCCATTTTTCAGATGTTCCTGTCCTAAGACTAAAAAAAACAACAGGAACATCTTATCTTTATCAAATATGACTCACCTTCGAAACTGTCATCTTTCACTCTCAGMCAACGGTTCCGCCCCCACTCAAACAACTGTTTATCTATTGGATTAACGATTAGCTCTGAAGATTTTGAAAAAGTGAAGCTCAGAGGCTCAGATTTTCAAGTATTCCATCGTTCCGCATCCTTTCTCGTGCAAAAAGTATTCCTTCTCTTCGTAGAATTTCAAATTAAAATTAATAAAGTGTAAGTTCACCAACTTCCTCTTCAATTCTCGTGTTTTATAACTTTCTCACACTCCTTTCACTTCATCTTTGTCCACTTCTTCTTCTTCTTCTTCTTATGATGTCGTTATTTTCAAAATGTCCTTTTTCATTCTCTTGGGGTCTCCAGATTTATTCGCCAGACTTACTTACAAGCTTTAGAATTTCAATTTGTTCAGCTTGCTTTCCCTAGATTCAAATTTTCGAAAATTCTCCCAAATACAAGGATCGACAGATTGCAAAACGATTGGTGAAAGAAGAAGGTTAGAAATCGAGATGACCTTCGTTTTCCTTTTCCGGGATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>278 266 152 125 54 46 25 23 23 8</canonical_bands>
                <polymorphic_bands>332 266 152 125 46 25 23 23 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATATGTTAATCCAGATGATCTCC</pcr_primer_p1>
		<pcr_primer_p2>GATGGAATACTTGAAAATCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATATGTTAATCCAGATGATCTCCAAATCTCAATCTCCATTTTTCAGATGTTCCTGTCCTAAGACTAAAAAAAACAACAGGAACATCTTATCTTTATCAAATATGACTCACCTTCGAAACTGTCATCTTTCACTCTCAGCCAACGGTTCCGCCCCCACTCAAACAACTGTTTATCTATTGGATTAACGATTAGCTCTGAAGATTTTGAAAAAGTGAAGCTCAGAGGCTCAGATTTTCAAGTATTCCATC</canonical_amplicon>
		<polymorphic_amplicon>AATATGTTAATCCAGATGATCTCCAAATCTCAATCTCCATTTTTCAGATGTTCCTGTCCTAAGACTAAAAAAAACAACAGGAACATCTTATCTTTATCAAATATGACTCACCTTCGAAACTGTCATCTTTCACTCTCAGMCAACGGTTCCGCCCCCACTCAAACAACTGTTTATCTATTGGATTAACGATTAGCTCTGAAGATTTTGAAAAAGTGAAGCTCAGAGGCTCAGATTTTCAAGTATTCCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18635</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>128037</contig_pos>
        <strand>+</strand>
        <context>GGAGATGGGG[A/G]ATAGGTTGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGACTCGGCAAGAATATAATAGGTTAGGGAGGTATCTAGGGAGATGGGG</left_flank>
        <right_flank>ATAGGTTGATGTTGATATCTAGCCTCTCAGCATTTTTGTTTTCAGGGAAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTACCCCAGAATTGAGTACTTTGTACTTCTGAATTGCTTTGTACTCTAATGACTCCAAAATTTTTGTACCCTCCGAATTATGTGCCATGCAGTTTCAATATTCTCTTTTTATGATCCAGGACTGTTCCAATAGTCAAACGCCGCTCAGACAGTTACTATCTATTGGTATCAGTATCTGATGATTATCTTCCAGACACCTCTCGTGTTTTGACTCCGGAGAACAACGAATTGCCAGAAAACCTGCAGGACTTCATTTTGCAATACTCAAATCAGTACACCAGAGAGGACAGCGTCAAGGGACGCCCTCCAAGCGCCGACTCGGGAGTCTGCTCCCCAATGTCGGCTCGTTCGGCACCCAATGCATCTCCACAAGTCCCACAAGGAACCTGCAGGTAAGAAATTTCAGGGAATCGATAGTTTTTTATCTTGGAAAGCCAGAAAAAGCGCGTGACTCGGCAAGAATATAATAGGTTAGGGAGGTATCTAGGGAGATGGGGGATAGGTTGATGTTGATATCTAGCCTCTCAGCATTTTTGTTTTCAGGGAAATTTTTGTAGCTTCATAACAACTCCACTCACACAATTATTACGCGCGTCAAGAATAGTACGATTTTCTGATGAAGTTGATAACAAACTTCATTTCTCTTCTAACAGGTAGTCAAAAACCAAGAGAGCTTACATTTAGCCACGAGGTTCCTAATTTTAAAGTTTTGTATCTTGCATTTGTTCTTTTGGTTTGTTTATCATCACCCTTGAAAATCACCACATCCTAATTTAATGGGGATACTGTAGCATCAAACAGCTCATGCTTTTCTCTTCTGTGTTACGGTGAAGATTTGTGAAGCTTTATGAACAATAAACATTCTAGAAGCATCCACACAGTCAGGTTTAAACCTTTCATTCATAAGCCATTCAAAAATTCAAATAGGGTTACGGTAGTCGCGTGGTAGAAACATAATTTTGCGAATCAACGTTTCCTCATAGGAAGAATCATATAGG</canonical>
            <polymorphic>TTGTACCCCAGAATTGAGTACTTTGTACTTCTGAATTGCTTTGTACTCTAATGACTCCAAAATTTTTGTACCCTCCGAATTATGTGCCATGCAGTTTCAATATTCTCTTTTTATGATCCAGGACTGTTCCAATAGTCAAACGCCGCTCAGACAGTTACTATCTATTGGTATCAGTATCTGATGATTATCTTCCAGACACCTCTCGTGTTTTGACTCCGGAGAACAACGAATTGCCAGAAAACCTGCAGGACTTCATTTTGCAATACTCAAATCAGTACACCAGAGAGGACAGCGTCAAGGGACGCCCTCCAAGCGCCGACTCGGGAGTCTGCTCCCCAATGTCGGCTCGTTCGGCACCCAATGCATCTCCACAAGTCCCACAAGGAACCTGCAGGTAAGAAATTTCAGGGAATCGATAGTTTTTTATCTTGGAAAGCCAGAAAAAGCGCGTGACTCGGCAAGAATATAATAGGTTAGGGAGGTATCTAGGGAGATGGGGRATAGGTTGATGTTGATATCTAGCCTCTCAGCATTTTTGTTTTCAGGGAAATTTTTGTAGCTTCATAACAACTCCACTCACACAATTATTACGCGCGTCAAGAATAGTACGATTTTCTGATGAAGTTGATAACAAACTTCATTTCTCTTCTAACAGGTAGTCAAAAACCAAGAGAGCTTACATTTAGCCACGAGGTTCCTAATTTTAAAGTTTTGTATCTTGCATTTGTTCTTTTGGTTTGTTTATCATCACCCTTGAAAATCACCACATCCTAATTTAATGGGGATACTGTAGCATCAAACAGCTCATGCTTTTCTCTTCTGTGTTACGGTGAAGATTTGTGAAGCTTTATGAACAATAAACATTCTAGAAGCATCCACACAGTCAGGTTTAAACCTTTCATTCATAAGCCATTCAAAAATTCAAATAGGGTTACGGTAGTCGCGTGGTAGAAACATAATTTTGCGAATCAACGTTTCCTCATAGGAAGAATCATATAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTATCTTGGAAAGCCAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCTTGGTTTTTGACTACCTGTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTATCTTGGAAAGCCAGAAAAAGCGCGTGACTCGGCAAGAATATAATAGGTTAGGGAGGTATCTAGGGAGATGGGGGATAGGTTGATGTTGATATCTAGCCTCTCAGCATTTTTGTTTTCAGGGAAATTTTTGTAGCTTCATAACAACTCCACTCACACAATTATTACGCGCGTCAAGAATAGTACGATTTTCTGATGAAGTTGATAACAAACTTCATTTCTCTTCTAACAGGTAGTCAAAAACCAAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTATCTTGGAAAGCCAGAAAAAGCGCGTGACTCGGCAAGAATATAATAGGTTAGGGAGGTATCTAGGGAGATGGGGRATAGGTTGATGTTGATATCTAGCCTCTCAGCATTTTTGTTTTCAGGGAAATTTTTGTAGCTTCATAACAACTCCACTCACACAATTATTACGCGCGTCAAGAATAGTACGATTTTCTGATGAAGTTGATAACAAACTTCATTTCTCTTCTAACAGGTAGTCAAAAACCAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18636</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>160473</contig_pos>
        <strand>+</strand>
        <context>GGAAATTTTG[A/G]AAATTGTGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCTATCCTGCAAAGTCTATGTAGAGACCGAAGATTGCAAGGAAATTTTG</left_flank>
        <right_flank>AAATTGTGTCGCAAGAAAACGAAACTTTGGAGGCTCTATGTCACAGAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGCAGGAAAAAGATGGATTGCCCCGGAAAAAGACGACGCTGCGATAAGAAGATGGGACGAAGAGAAAAAAGTAGGCGTGACAAATGGGGACTAGAAAAAACGGAGAAGAGGGAAGGAAGTTTAGAGGGATGGGGGCTTATCAGACCGAATGGAGATGAGTCGGATGACCAAAAACATCGAGAATCTTGTTCTTGTTTTTTTTGTTGGGTTTTACAATGAATGGGGAGGAACAGGGACAAACTGAATTTGAAATTTGGTCAGTCAGTATATTTTCTTTTTGCTTTTGTTTTTCGTTTTGTTTCGTTTCACTCAATGTGACATGGGTTCATCCAGTGGTGGCCGAAAAAAAAATTGGGAAAAACAAAATAGAGAGGGCATTCTGAAAAGAGGGACACGTTCATTTTTTACTCTGTGGTTTTCAAGAAAGTCCTAAGAAAAAGGGCACTATCCTATCCTGCAAAGTCTATGTAGAGACCGAAGATTGCAAGGAAATTTTGGAAATTGTGTCGCAAGAAAACGAAACTTTGGAGGCTCTATGTCACAGAACTGTCATATAGGTGTCAATTTTAGTTGTGATGTTCAAATTAATTTTGTACACAAGATTGAAAGGTAGTCATGGGTTACAGTATATAGAAACTTTCCAATTGGAGCTCAACTGTCAAGTTTTTGATTATTTTGGAAATATCGACGGATGTGAAACAGATCTAGGTTGAAAATTTTGCATTCAAAGAATTTTTCGAAATATCCTAATTTTCCAGATATTTGCCCATTTTTAAAAGACGCCTCTTTTTTTACGTTGTTAGTACAAATCGGACCAAAAAGGGGCTTCTTTCCAAAACTGACAGAAGCTGAAAAACTAGGAACTTTCAAACCATTCTGTAAATGCAAAATTTTGAATTTAGGTCTATTTCACACTCTTCAAAATTTTTCAAAGTGATTGGAAACTTCACCGCCAAGCTCTAGCCTCCTGAAAAAGCCAAAACATCCATTGAAAATCT</canonical>
            <polymorphic>TTGGCAGGAAAAAGATGGATTGCCCCGGAAAAAGACGACGCTGCGATAAGAAGATGGGACGAAGAGAAAAAAGTAGGCGTGACAAATGGGGACTAGAAAAAACGGAGAAGAGGGAAGGAAGTTTAGAGGGATGGGGGCTTATCAGACCGAATGGAGATGAGTCGGATGACCAAAAACATCGAGAATCTTGTTCTTGTTTTTTTTGTTGGGTTTTACAATGAATGGGGAGGAACAGGGACAAACTGAATTTGAAATTTGGTCAGTCAGTATATTTTCTTTTTGCTTTTGTTTTTCGTTTTGTTTCGTTTCACTCAATGTGACATGGGTTCATCCAGTGGTGGCCGAAAAAAAAATTGGGAAAAACAAAATAGAGAGGGCATTCTGAAAAGAGGGACACGTTCATTTTTTACTCTGTGGTTTTCAAGAAAGTCCTAAGAAAAAGGGCACTATCCTATCCTGCAAAGTCTATGTAGAGACCGAAGATTGCAAGGAAATTTTGRAAATTGTGTCGCAAGAAAACGAAACTTTGGAGGCTCTATGTCACAGAACTGTCATATAGGTGTCAATTTTAGTTGTGATGTTCAAATTAATTTTGTACACAAGATTGAAAGGTAGTCATGGGTTACAGTATATAGAAACTTTCCAATTGGAGCTCAACTGTCAAGTTTTTGATTATTTTGGAAATATCGACGGATGTGAAACAGATCTAGGTTGAAAATTTTGCATTCAAAGAATTTTTCGAAATATCCTAATTTTCCAGATATTTGCCCATTTTTAAAAGACGCCTCTTTTTTTACGTTGTTAGTACAAATCGGACCAAAAAGGGGCTTCTTTCCAAAACTGACAGAAGCTGAAAAACTAGGAACTTTCAAACCATTCTGTAAATGCAAAATTTTGAATTTAGGTCTATTTCACACTCTTCAAAATTTTTCAAAGTGATTGGAAACTTCACCGCCAAGCTCTAGCCTCCTGAAAAAGCCAAAACATCCATTGAAAATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTGGGAAAAACAAAATAG</pcr_primer_p1>
		<pcr_primer_p2>TTGAACATCACAACTAAAATTGA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTGGGAAAAACAAAATAGAGAGGGCATTCTGAAAAGAGGGACACGTTCATTTTTTACTCTGTGGTTTTCAAGAAAGTCCTAAGAAAAAGGGCACTATCCTATCCTGCAAAGTCTATGTAGAGACCGAAGATTGCAAGGAAATTTTGGAAATTGTGTCGCAAGAAAACGAAACTTTGGAGGCTCTATGTCACAGAACTGTCATATAGGTGTCAATTTTAGTTGTGATGTTCAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTGGGAAAAACAAAATAGAGAGGGCATTCTGAAAAGAGGGACACGTTCATTTTTTACTCTGTGGTTTTCAAGAAAGTCCTAAGAAAAAGGGCACTATCCTATCCTGCAAAGTCTATGTAGAGACCGAAGATTGCAAGGAAATTTTGRAAATTGTGTCGCAAGAAAACGAAACTTTGGAGGCTCTATGTCACAGAACTGTCATATAGGTGTCAATTTTAGTTGTGATGTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18637</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>241171</contig_pos>
        <strand></strand>
        <context>AATCTTCCGT[T/C]CTGTCTCATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTTTCGAAGACCAATTTTATCAAGATTTTCAGTTTTCTGTAATCTTCCGT</left_flank>
        <right_flank>CTGTCTCATTGTTTTTTTTAAAGATTCCTTTAACAAATTCGCCCGGGCAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACAACAGCTACTACTAGAACAACCCTGGCTTTCCGTTCGGTTTCTTTTTCCTTTGTCTTCTCTTTTCTTTCAATATTATTCTACCCCGCGCTCAGTGACCTCTGTTTTTTTTTTGCTGTCCATGTTATTTTTTTCTCCGTGTCTGTCTTCTTTGAAATATGATTTGGGAGACGTCAAACTGGGCGGGGTCCTAGAGACCCTGTTAGTTTGAAGGATTAGAAATCGTCAATGGAAATTGGCTCTTTTTTGTGTTTTGATTGTTTCTTGATCTTCATTTATTTTTAGGGTTTTTTGAAGATAACGCGTCTTCTGATAACGCATGTGGTGATTACGCATGACTTTGGTTTGTTATGAAAATCGAACCACATGCAGTAAGCCGAAAAACTGGAAACGGATATAAAAGGTTCATCGTTACCCAATTTTCAGCTAGTTGTACTTTCGAGATTTCTTTCGAAGACCAATTTTATCAAGATTTTCAGTTTTCTGTAATCTTCCGTTCTGTCTCATTGTTTTTTTTAAAGATTCCTTTAACAAATTCGCCCGGGCAAAATGTCAGGATACTGTAAAACCCAGAAGAAAATGGTTGTGAATTTACAGTGTTGGTCAATAAAATGTACAATAAAACTTTTTTTTTCAGTTTTTTCTCATTTACACCACTTTCAGAAGTCTGTAGCTCGGCTGTCAATTGTCGGATCACTTTAAAAATCCTGGAAGACGTAAAACAGGCCATGATGATGAGTTTTGCAGTCACAGACTTTTCTTAAAGTTCCTAGTTTGTCAGCTATTCAAAGATTTCTGAAAGACACCTGTTTTTTCCCGTTTTTAGTACGAACGGGCCAAAAAGGGATGACTTTCAGAAATCGGGAAATAGCTACAAAACTAGAAAATGTCTTATAATTCTGTAAATGCAAAATTTTCAATCTATAGCTGTTTTATACCCTCCAAAATTTCCAAAAAAAAAACCGAAATTATGACAACCTAGCTGCCGACTCTTGAAA</canonical>
            <polymorphic>CTACAACAGCTACTACTAGAACAACCCTGGCTTTCCGTTCGGTTTCTTTTTCCTTTGTCTTCTCTTTTCTTTCAATATTATTCTACCCCGCGCTCAGTGACCTCTGTTTTTTTTTTGCTGTCCATGTTATTTTTTTCTCCGTGTCTGTCTTCTTTGAAATATGATTTGGGAGACGTCAAACTGGGCGGGGTCCTAGAGACCCTGTTAGTTTGAAGGATTAGAAATCGTCAATGGAAATTGGCTCTTTTTTGTGTTTTGATTGTTTCTTGATCTTCATTTATTTTTAGGGTTTTTTGAAGATAACGCGTCTTCTGATAACGCATGTGGTGATTACGCATGACTTTGGTTTGTTATGAAAATCGAACCACATGCAGTAAGCCGAAAAACTGGAAACGGATATAAAAGGTTCATCGTTACCCAATTTTCAGCTAGTTGTACTTTCGAGATTTCTTTCGAAGACCAATTTTATCAAGATTTTCAGTTTTCTGTAATCTTCCGTYCTGTCTCATTGTTTTTTTTAAAGATTCCTTTAACAAATTCGCCCGGGCAAAATGTCAGGATACTGTAAAACCCAGAAGAAAATGGTTGTGAATTTACAGTGTTGGTCAATAAAATGTACAATAAAACTTTTTTTTTCAGTTTTTTCTCATTTACACCACTTTCAGAAGTCTGTAGCTCGGCTGTCAATTGTCGGATCACTTTAAAAATCCTGGAAGACGTAAAACAGGCCATGATGATGAGTTTTGCAGTCACAGACTTTTCTTAAAGTTCCTAGTTTGTCAGCTATTCAAAGATTTCTGAAAGACACCTGTTTTTTCCCGTTTTTAGTACGAACGGGCCAAAAAGGGATGACTTTCAGAAATCGGGAAATAGCTACAAAACTAGAAAATGTCTTATAATTCTGTAAATGCAAAATTTTCAATCTATAGCTGTTTTATACCCTCCAAAATTTCCAAAAAAAAAACCGAAATTATGACAACCTAGCTGCCGACTCTTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACTTTGGTTTGTTATGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CATTTTCTTCTGGGTTTTACAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGACTTTGGTTTGTTATGAAAATCGAACCACATGCAGTAAGCCGAAAAACTGGAAACGGATATAAAAGGTTCATCGTTACCCAATTTTCAGCTAGTTGTACTTTCGAGATTTCTTTCGAAGACCAATTTTATCAAGATTTTCAGTTTTCTGTAATCTTCCGTTCTGTCTCATTGTTTTTTTTAAAGATTCCTTTAACAAATTCGCCCGGGCAAAATGTCAGGATACTGTAAAACCCAGAAGAAAATG</canonical_amplicon>
		<polymorphic_amplicon>TGACTTTGGTTTGTTATGAAAATCGAACCACATGCAGTAAGCCGAAAAACTGGAAACGGATATAAAAGGTTCATCGTTACCCAATTTTCAGCTAGTTGTACTTTCGAGATTTCTTTCGAAGACCAATTTTATCAAGATTTTCAGTTTTCTGTAATCTTCCGTYCTGTCTCATTGTTTTTTTTAAAGATTCCTTTAACAAATTCGCCCGGGCAAAATGTCAGGATACTGTAAAACCCAGAAGAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18639</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>241216</contig_pos>
        <strand></strand>
        <context>AAATTCGCCC[G/C]GGCAAAATGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TCCGTTCTGTCTCATTGTTTTTTTTAAAGATTCCTTTAACAAATTCGCCC</left_flank>
        <right_flank>GGCAAAATGTCAGGATACTGTAAAACCCAGAAGAAAATGGTTGTGAATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTTCCTTTGTCTTCTCTTTTCTTTCAATATTATTCTACCCCGCGCTCAGTGACCTCTGTTTTTTTTTTGCTGTCCATGTTATTTTTTTCTCCGTGTCTGTCTTCTTTGAAATATGATTTGGGAGACGTCAAACTGGGCGGGGTCCTAGAGACCCTGTTAGTTTGAAGGATTAGAAATCGTCAATGGAAATTGGCTCTTTTTTGTGTTTTGATTGTTTCTTGATCTTCATTTATTTTTAGGGTTTTTTGAAGATAACGCGTCTTCTGATAACGCATGTGGTGATTACGCATGACTTTGGTTTGTTATGAAAATCGAACCACATGCAGTAAGCCGAAAAACTGGAAACGGATATAAAAGGTTCATCGTTACCCAATTTTCAGCTAGTTGTACTTTCGAGATTTCTTTCGAAGACCAATTTTATCAAGATTTTCAGTTTTCTGTAATCTTCCGTTCTGTCTCATTGTTTTTTTTAAAGATTCCTTTAACAAATTCGCCCGGGCAAAATGTCAGGATACTGTAAAACCCAGAAGAAAATGGTTGTGAATTTACAGTGTTGGTCAATAAAATGTACAATAAAACTTTTTTTTTCAGTTTTTTCTCATTTACACCACTTTCAGAAGTCTGTAGCTCGGCTGTCAATTGTCGGATCACTTTAAAAATCCTGGAAGACGTAAAACAGGCCATGATGATGAGTTTTGCAGTCACAGACTTTTCTTAAAGTTCCTAGTTTGTCAGCTATTCAAAGATTTCTGAAAGACACCTGTTTTTTCCCGTTTTTAGTACGAACGGGCCAAAAAGGGATGACTTTCAGAAATCGGGAAATAGCTACAAAACTAGAAAATGTCTTATAATTCTGTAAATGCAAAATTTTCAATCTATAGCTGTTTTATACCCTCCAAAATTTCCAAAAAAAAAACCGAAATTATGACAACCTAGCTGCCGACTCTTGAAAATGCTGTAAATTACAGAAAATTTACAGAAATATACGTTTTTGTAC</canonical>
            <polymorphic>CTTTTTCCTTTGTCTTCTCTTTTCTTTCAATATTATTCTACCCCGCGCTCAGTGACCTCTGTTTTTTTTTTGCTGTCCATGTTATTTTTTTCTCCGTGTCTGTCTTCTTTGAAATATGATTTGGGAGACGTCAAACTGGGCGGGGTCCTAGAGACCCTGTTAGTTTGAAGGATTAGAAATCGTCAATGGAAATTGGCTCTTTTTTGTGTTTTGATTGTTTCTTGATCTTCATTTATTTTTAGGGTTTTTTGAAGATAACGCGTCTTCTGATAACGCATGTGGTGATTACGCATGACTTTGGTTTGTTATGAAAATCGAACCACATGCAGTAAGCCGAAAAACTGGAAACGGATATAAAAGGTTCATCGTTACCCAATTTTCAGCTAGTTGTACTTTCGAGATTTCTTTCGAAGACCAATTTTATCAAGATTTTCAGTTTTCTGTAATCTTCCGTTCTGTCTCATTGTTTTTTTTAAAGATTCCTTTAACAAATTCGCCCSGGCAAAATGTCAGGATACTGTAAAACCCAGAAGAAAATGGTTGTGAATTTACAGTGTTGGTCAATAAAATGTACAATAAAACTTTTTTTTTCAGTTTTTTCTCATTTACACCACTTTCAGAAGTCTGTAGCTCGGCTGTCAATTGTCGGATCACTTTAAAAATCCTGGAAGACGTAAAACAGGCCATGATGATGAGTTTTGCAGTCACAGACTTTTCTTAAAGTTCCTAGTTTGTCAGCTATTCAAAGATTTCTGAAAGACACCTGTTTTTTCCCGTTTTTAGTACGAACGGGCCAAAAAGGGATGACTTTCAGAAATCGGGAAATAGCTACAAAACTAGAAAATGTCTTATAATTCTGTAAATGCAAAATTTTCAATCTATAGCTGTTTTATACCCTCCAAAATTTCCAAAAAAAAAACCGAAATTATGACAACCTAGCTGCCGACTCTTGAAAATGCTGTAAATTACAGAAAATTTACAGAAATATACGTTTTTGTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>498 335 167</canonical_bands>
                <polymorphic_bands>499 335 166</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCCGGG</site>
                <isoschizomers>
                    <enzyme>Cfr9I</enzyme>
                    <enzyme>PspAI</enzyme>
                    <enzyme>SmaI</enzyme>
                    <enzyme>XmaCI</enzyme>
                    <enzyme>XmaI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCCCGGGC</site>
                <isoschizomers>
                    <enzyme>SrfI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAAGATTTTCAGTTTTCTGTAAT</pcr_primer_p1>
		<pcr_primer_p2>TCCGAAAATTCAAGACAAATAC</pcr_primer_p2>
		<pcr_amplicon_size>618</pcr_amplicon_size>
		<canonical_amplicon>ATCAAGATTTTCAGTTTTCTGTAATCTTCCGTTCTGTCTCATTGTTTTTTTTAAAGATTCCTTTAACAAATTCGCCCGGGCAAAATGTCAGGATACTGT</canonical_amplicon>
		<polymorphic_amplicon>ATCAAGATTTTCAGTTTTCTGTAATCTTCCGTTCTGTCTCATTGTTTTTTTTAAAGATTCCTTTAACAAATTCGCCCSGGCAAAATGTCAGGATACTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18640</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>243169</contig_pos>
        <strand>+</strand>
        <context>TCTTCCAGAA[G/T]TTATTCAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGATATTTTCAGCAACATCTGGGTTCCTTTGTTAAAAGTTTCTTCCAGAA</left_flank>
        <right_flank>TTATTCAAAATTTTTTATTCCGATCTGTCAAAGTGATACTTGATGATTAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCTCGAATTGTAGGCCGTTTACCGTGAACACTCTAATAGAGCCGATATATCTCTGTTTTTATGAAAGGTATCAAAACGTCGTCAAATGACAAAATTTTTAGCATAATAACGAAAATATTTTGTCAGTTGACTATTTTTTTCAAATCTTTCACAGAAAAAGAAGGTGCGGGCTCAAAGTTGACGGTTTGAGTGGTTATCTATAAGTGTTTCAGGTAATCTGGAAAGTTGTGGACATAACATTTTTTGTTCCAGAAAGTGTTTGACATAGGACATTCGTTTTAATTCTGAATATAATACAACAATATCATGTTCTAATACGACCTAGAAGTTGAGAAAATCATCTTTAAAAATTTCCACTAAAAACACGATTTTTAGCACTAAAACTGAACCTGGCTAGCGGATAAAAATTTTTAGGGGTGCCTGGATAGATTATTTTCAACCTATCGTGATATTTTCAGCAACATCTGGGTTCCTTTGTTAAAAGTTTCTTCCAGAATTTATTCAAAATTTTTTATTCCGATCTGTCAAAGTGATACTTGATGATTAGAATATTTGTCTGGTGTGCTAGAAAGATTTTCTCAAAAAAAAAGTTGGAATGTTTTTGACGAAACTAATTCACGCATCTATGAAAAACTAATTCGGAGATTTATGGCGCTCATCAGTCTGTTGAAATGATGTCTATTTTGTTGAACGTTCAATATTTTACTGGTTTAGTGATCTTCACATTTCTTAGACTAGCCCTTCCACATGAACACGTTCAGAACTCAAAACTTCGATTCCGCTTCCGGTTTTGTTTTTTCTTTTTGCTTCCCTTCCCTCTCTTCTTCTTTCTGATCCAAAATTTTCCCTTTTAAAAAGTTCACAGGACCAGCACGGACTACCGGAAAGCGAGAGCATGTGAGTAAAGGGGGGCGGAGCTGAAAAAGGCGGGAGGGGCACAGGAAGGAAAAGCGATGAGACATCCCTCTAACGCTACTTTGCTTCTTTCTCTCCCTAA</canonical>
            <polymorphic>TTTTCTCGAATTGTAGGCCGTTTACCGTGAACACTCTAATAGAGCCGATATATCTCTGTTTTTATGAAAGGTATCAAAACGTCGTCAAATGACAAAATTTTTAGCATAATAACGAAAATATTTTGTCAGTTGACTATTTTTTTCAAATCTTTCACAGAAAAAGAAGGTGCGGGCTCAAAGTTGACGGTTTGAGTGGTTATCTATAAGTGTTTCAGGTAATCTGGAAAGTTGTGGACATAACATTTTTTGTTCCAGAAAGTGTTTGACATAGGACATTCGTTTTAATTCTGAATATAATACAACAATATCATGTTCTAATACGACCTAGAAGTTGAGAAAATCATCTTTAAAAATTTCCACTAAAAACACGATTTTTAGCACTAAAACTGAACCTGGCTAGCGGATAAAAATTTTTAGGGGTGCCTGGATAGATTATTTTCAACCTATCGTGATATTTTCAGCAACATCTGGGTTCCTTTGTTAAAAGTTTCTTCCAGAAKTTATTCAAAATTTTTTATTCCGATCTGTCAAAGTGATACTTGATGATTAGAATATTTGTCTGGTGTGCTAGAAAGATTTTCTCAAAAAAAAAGTTGGAATGTTTTTGACGAAACTAATTCACGCATCTATGAAAAACTAATTCGGAGATTTATGGCGCTCATCAGTCTGTTGAAATGATGTCTATTTTGTTGAACGTTCAATATTTTACTGGTTTAGTGATCTTCACATTTCTTAGACTAGCCCTTCCACATGAACACGTTCAGAACTCAAAACTTCGATTCCGCTTCCGGTTTTGTTTTTTCTTTTTGCTTCCCTTCCCTCTCTTCTTCTTTCTGATCCAAAATTTTCCCTTTTAAAAAGTTCACAGGACCAGCACGGACTACCGGAAAGCGAGAGCATGTGAGTAAAGGGGGGCGGAGCTGAAAAAGGCGGGAGGGGCACAGGAAGGAAAAGCGATGAGACATCCCTCTAACGCTACTTTGCTTCTTTCTCTCCCTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>334 256 158 95 89 57 11</canonical_bands>
                <polymorphic_bands>334 256 158 100 95 57</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>204 188 158 107 89 87 68 57 23 11 8</canonical_bands>
                <polymorphic_bands>204 188 158 107 100 87 68 57 23 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGATATTTTCAGCAACATCTG</pcr_primer_p1>
		<pcr_primer_p2>ACGTTCAACAAAATAGACATCAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTGATATTTTCAGCAACATCTGGGTTCCTTTGTTAAAAGTTTCTTCCAGAATTTATTCAAAATTTTTTATTCCGATCTGTCAAAGTGATACTTGATGATTAGAATATTTGTCTGGTGTGCTAGAAAGATTTTCTCAAAAAAAAAGTTGGAATGTTTTTGACGAAACTAATTCACGCATCTATGAAAAACTAATTCGGAGATTTATGGCGCTCATCAGTCTGTTGAAATGATGTCTATTTTGTTGAACGT</canonical_amplicon>
		<polymorphic_amplicon>GTGATATTTTCAGCAACATCTGGGTTCCTTTGTTAAAAGTTTCTTCCAGAAKTTATTCAAAATTTTTTATTCCGATCTGTCAAAGTGATACTTGATGATTAGAATATTTGTCTGGTGTGCTAGAAAGATTTTCTCAAAAAAAAAGTTGGAATGTTTTTGACGAAACTAATTCACGCATCTATGAAAAACTAATTCGGAGATTTATGGCGCTCATCAGTCTGTTGAAATGATGTCTATTTTGTTGAACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18641</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>243153</contig_pos>
        <strand>+</strand>
        <context>TCCYTTGTTA[A/G]AAGTTTCTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTTTCAACCTATCGTGATATTTTCAGCAACATCTGGGTTCCTTTGTTA</left_flank>
        <right_flank>AAGTTTCTTCCAGAATTTATTCAAAATTTTTTATTCCGATCTGTCAAAGT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTTTCGAACACGATTTTCTCGAATTGTAGGCCGTTTACCGTGAACACTCTAATAGAGCCGATATATCTCTGTTTTTATGAAAGGTATCAAAACGTCGTCAAATGACAAAATTTTTAGCATAATAACGAAAATATTTTGTCAGTTGACTATTTTTTTCAAATCTTTCACAGAAAAAGAAGGTGCGGGCTCAAAGTTGACGGTTTGAGTGGTTATCTATAAGTGTTTCAGGTAATCTGGAAAGTTGTGGACATAACATTTTTTGTTCCAGAAAGTGTTTGACATAGGACATTCGTTTTAATTCTGAATATAATACAACAATATCATGTTCTAATACGACCTAGAAGTTGAGAAAATCATCTTTAAAAATTTCCACTAAAAACACGATTTTTAGCACTAAAACTGAACCTGGCTAGCGGATAAAAATTTTTAGGGGTGCCTGGATAGATTATTTTCAACCTATCGTGATATTTTCAGCAACATCTGGGTTCCTTTGTTAAAAGTTTCTTCCAGAATTTATTCAAAATTTTTTATTCCGATCTGTCAAAGTGATACTTGATGATTAGAATATTTGTCTGGTGTGCTAGAAAGATTTTCTCAAAAAAAAAGTTGGAATGTTTTTGACGAAACTAATTCACGCATCTATGAAAAACTAATTCGGAGATTTATGGCGCTCATCAGTCTGTTGAAATGATGTCTATTTTGTTGAACGTTCAATATTTTACTGGTTTAGTGATCTTCACATTTCTTAGACTAGCCCTTCCACATGAACACGTTCAGAACTCAAAACTTCGATTCCGCTTCCGGTTTTGTTTTTTCTTTTTGCTTCCCTTCCCTCTCTTCTTCTTTCTGATCCAAAATTTTCCCTTTTAAAAAGTTCACAGGACCAGCACGGACTACCGGAAAGCGAGAGCATGTGAGTAAAGGGGGGCGGAGCTGAAAAAGGCGGGAGGGGCACAGGAAGGAAAAGCGATGAGACATCCCTCTAACGCTACTTTGC</canonical>
            <polymorphic>CATTTTTCGAACACGATTTTCTCGAATTGTAGGCCGTTTACCGTGAACACTCTAATAGAGCCGATATATCTCTGTTTTTATGAAAGGTATCAAAACGTCGTCAAATGACAAAATTTTTAGCATAATAACGAAAATATTTTGTCAGTTGACTATTTTTTTCAAATCTTTCACAGAAAAAGAAGGTGCGGGCTCAAAGTTGACGGTTTGAGTGGTTATCTATAAGTGTTTCAGGTAATCTGGAAAGTTGTGGACATAACATTTTTTGTTCCAGAAAGTGTTTGACATAGGACATTCGTTTTAATTCTGAATATAATACAACAATATCATGTTCTAATACGACCTAGAAGTTGAGAAAATCATCTTTAAAAATTTCCACTAAAAACACGATTTTTAGCACTAAAACTGAACCTGGCTAGCGGATAAAAATTTTTAGGGGTGCCTGGATAGATTATTTTCAACCTATCGTGATATTTTCAGCAACATCTGGGTTCCTTTGTTARAAGTTTCTTCCAGAATTTATTCAAAATTTTTTATTCCGATCTGTCAAAGTGATACTTGATGATTAGAATATTTGTCTGGTGTGCTAGAAAGATTTTCTCAAAAAAAAAGTTGGAATGTTTTTGACGAAACTAATTCACGCATCTATGAAAAACTAATTCGGAGATTTATGGCGCTCATCAGTCTGTTGAAATGATGTCTATTTTGTTGAACGTTCAATATTTTACTGGTTTAGTGATCTTCACATTTCTTAGACTAGCCCTTCCACATGAACACGTTCAGAACTCAAAACTTCGATTCCGCTTCCGGTTTTGTTTTTTCTTTTTGCTTCCCTTCCCTCTCTTCTTCTTTCTGATCCAAAATTTTCCCTTTTAAAAAGTTCACAGGACCAGCACGGACTACCGGAAAGCGAGAGCATGTGAGTAAAGGGGGGCGGAGCTGAAAAAGGCGGGAGGGGCACAGGAAGGAAAAGCGATGAGACATCCCTCTAACGCTACTTTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>373 298 134 130 65</canonical_bands>
                <polymorphic_bands>507 298 130 65</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTGGATAGATTATTTTCAACCT</pcr_primer_p1>
		<pcr_primer_p2>CCATAAATCTCCGAATTAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>CCTGGATAGATTATTTTCAACCTATCGTGATATTTTCAGCAACATCTGGGTTCCTTTGTTAAAAGTTTCTTCCAGAATTTATTCAAAATTTTTTATTCCGATCTGTCAAAGTGATACTTGATGATTAGAATATTTGTCTGGTGTGCTAGAAAGATTTTCTCAAAAAAAAAGTTGGAATGTTTTTGACGAAACTAATTCACGCATCTATGAAAAACTAATTCGGAGATTTATGG</canonical_amplicon>
		<polymorphic_amplicon>CCTGGATAGATTATTTTCAACCTATCGTGATATTTTCAGCAACATCTGGGTTCCTTTGTTARAAGTTTCTTCCAGAATTTATTCAAAATTTTTTATTCCGATCTGTCAAAGTGATACTTGATGATTAGAATATTTGTCTGGTGTGCTAGAAAGATTTTCTCAAAAAAAAAGTTGGAATGTTTTTGACGAAACTAATTCACGCATCTATGAAAAACTAATTCGGAGATTTATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18642</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>268456</contig_pos>
        <strand>+</strand>
        <context>CCTTTTTTCT[C/T]TCTCATCAKT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATGTCAGAAAGCGGAACGCAAATAAACCAAACACCCTCCTTTTTTCT</left_flank>
        <right_flank>TCTCATCAGTAGTTTCCATTCTTGTGACGCGTTTTATTTTCCTATTTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACGTTTCTGTATTTCTTATTCATTGGTACTGTATATTGTTTTTTATAATTATCAGAAAAGATTATAATAAATTATTTTCTACAATGTAAATTAATATTATTCCTAAAAATTGCTTTCCAAACCTTCAAATCACAATTTTCATTTAAAAACCCTATTGAGAAATTTAACGAAATCTGAAAAATGAGCATTTACGCTAGTTTTTAGTACCGAACAATTGCAAATTTTTTGCTGATTCTAAAAATATATAATTTGTTTCTATTCGATCAACAACAGATGGAGAAAATCAGATAAACTGATTTTGCTCCGCACACTACGCATATGCACGAGATGTGCGTCAACCGCCGCACTTTGCACATCTCGCGGCGCAAACACATGAGCCCTCCATCCCCTTGTCTATTTTCCGCTGACTATGGCAAAATTCGTCAAAAACTAAAAGTAGAACAGCATTAAAATGTCAGAAAGCGGAACGCAAATAAACCAAACACCCTCCTTTTTTCTTTCTCATCAGTAGTTTCCATTCTTGTGACGCGTTTTATTTTCCTATTTCAACAAACATTTTCTTTTGTCGAATAATTTATAATGTCTCTTTTGTCCTTCCTCTATTCCTTTTCGGCGACGATCCTTTCGCACCTTATCTGTTGATCCAACGCTTTTTTGCCACTTTTACGCGTTTTTTATTGCTTTTGGTGGGTGATTTTGCTTGAAAACTGCTTTAGTTGATACCGTCTTGGTTTCACAAGTGATCTGAAGATTTCTGAGAACTTGAAAAAGGATGTTTCGGTAGTTTAGATTGTTTTCTCTAGCAGGAACTCTTTATTTTTTTCTGCAAACCCCTTTGAAAAAGTATTAAAATCTGAAATTAGGGTTTTGAACTATTCAATGTTCATTTCAAAACATGTTTCTTTCTAGTCTTATAACCTTCGCCAGTGAAAAAAGCCTGACCTTATGAAAAACCGGCTCTAATAATCAACATCATTCATTTTTCTTTGTCTCTCCACC</canonical>
            <polymorphic>TACGTTTCTGTATTTCTTATTCATTGGTACTGTATATTGTTTTTTATAATTATCAGAAAAGATTATAATAAATTATTTTCTACAATGTAAATTAATATTATTCCTAAAAATTGCTTTCCAAACCTTCAAATCACAATTTTCATTTAAAAACCCTATTGAGAAATTTAACGAAATCTGAAAAATGAGCATTTACGCTAGTTTTTAGTACCGAACAATTGCAAATTTTTTGCTGATTCTAAAAATATATAATTTGTTTCTATTCGATCAACAACAGATGGAGAAAATCAGATAAACTGATTTTGCTCCGCACACTACGCATATGCACGAGATGTGCGTCAACCGCCGCACTTTGCACATCTCGCGGCGCAAACACATGAGCCCTCCATCCCCTTGTCTATTTTCCGCTGACTATGGCAAAATTCGTCAAAAACTAAAAGTAGAACAGCATTAAAATGTCAGAAAGCGGAACGCAAATAAACCAAACACCCTCCTTTTTTCTYTCTCATCAGTAGTTTCCATTCTTGTGACGCGTTTTATTTTCCTATTTCAACAAACATTTTCTTTTGTCGAATAATTTATAATGTCTCTTTTGTCCTTCCTCTATTCCTTTTCGGCGACGATCCTTTCGCACCTTATCTGTTGATCCAACGCTTTTTTGCCACTTTTACGCGTTTTTTATTGCTTTTGGTGGGTGATTTTGCTTGAAAACTGCTTTAGTTGATACCGTCTTGGTTTCACAAGTGATCTGAAGATTTCTGAGAACTTGAAAAAGGATGTTTCGGTAGTTTAGATTGTTTTCTCTAGCAGGAACTCTTTATTTTTTTCTGCAAACCCCTTTGAAAAAGTATTAAAATCTGAAATTAGGGTTTTGAACTATTCAATGTTCATTTCAAAACATGTTTCTTTCTAGTCTTATAACCTTCGCCAGTGAAAAAAGCCTGACCTTATGAAAAACCGGCTCTAATAATCAACATCATTCATTTTTCTTTGTCTCTCCACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTACGCATATGCACGAGAT</pcr_primer_p1>
		<pcr_primer_p2>AAATGTTTGTTGAAATAGGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTACGCATATGCACGAGATGTGCGTCAACCGCCGCACTTTGCACATCTCGCGGCGCAAACACATGAGCCCTCCATCCCCTTGTCTATTTTCCGCTGACTATGGCAAAATTCGTCAAAAACTAAAAGTAGAACAGCATTAAAATGTCAGAAAGCGGAACGCAAATAAACCAAACACCCTCCTTTTTTCTTTCTCATCAGTAGTTTCCATTCTTGTGACGCGTTTTATTTTCCTATTTCAACAAACATTT</canonical_amplicon>
		<polymorphic_amplicon>ACTACGCATATGCACGAGATGTGCGTCAACCGCCGCACTTTGCACATCTCGCGGCGCAAACACATGAGCCCTCCATCCCCTTGTCTATTTTCCGCTGACTATGGCAAAATTCGTCAAAAACTAAAAGTAGAACAGCATTAAAATGTCAGAAAGCGGAACGCAAATAAACCAAACACCCTCCTTTTTTCTYTCTCATCAGTAGTTTCCATTCTTGTGACGCGTTTTATTTTCCTATTTCAACAAACATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18643</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>268465</contig_pos>
        <strand>+</strand>
        <context>TYTCTCATCA[G/T]TAGTTTCCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAAGCGGAACGCAAATAAACCAAACACCCTCCTTTTTTCTTTCTCATCA</left_flank>
        <right_flank>TAGTTTCCATTCTTGTGACGCGTTTTATTTTCCTATTTCAACAAACATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATTTCTTATTCATTGGTACTGTATATTGTTTTTTATAATTATCAGAAAAGATTATAATAAATTATTTTCTACAATGTAAATTAATATTATTCCTAAAAATTGCTTTCCAAACCTTCAAATCACAATTTTCATTTAAAAACCCTATTGAGAAATTTAACGAAATCTGAAAAATGAGCATTTACGCTAGTTTTTAGTACCGAACAATTGCAAATTTTTTGCTGATTCTAAAAATATATAATTTGTTTCTATTCGATCAACAACAGATGGAGAAAATCAGATAAACTGATTTTGCTCCGCACACTACGCATATGCACGAGATGTGCGTCAACCGCCGCACTTTGCACATCTCGCGGCGCAAACACATGAGCCCTCCATCCCCTTGTCTATTTTCCGCTGACTATGGCAAAATTCGTCAAAAACTAAAAGTAGAACAGCATTAAAATGTCAGAAAGCGGAACGCAAATAAACCAAACACCCTCCTTTTTTCTTTCTCATCAGTAGTTTCCATTCTTGTGACGCGTTTTATTTTCCTATTTCAACAAACATTTTCTTTTGTCGAATAATTTATAATGTCTCTTTTGTCCTTCCTCTATTCCTTTTCGGCGACGATCCTTTCGCACCTTATCTGTTGATCCAACGCTTTTTTGCCACTTTTACGCGTTTTTTATTGCTTTTGGTGGGTGATTTTGCTTGAAAACTGCTTTAGTTGATACCGTCTTGGTTTCACAAGTGATCTGAAGATTTCTGAGAACTTGAAAAAGGATGTTTCGGTAGTTTAGATTGTTTTCTCTAGCAGGAACTCTTTATTTTTTTCTGCAAACCCCTTTGAAAAAGTATTAAAATCTGAAATTAGGGTTTTGAACTATTCAATGTTCATTTCAAAACATGTTTCTTTCTAGTCTTATAACCTTCGCCAGTGAAAAAAGCCTGACCTTATGAAAAACCGGCTCTAATAATCAACATCATTCATTTTTCTTTGTCTCTCCACCATCTTGTTA</canonical>
            <polymorphic>GTATTTCTTATTCATTGGTACTGTATATTGTTTTTTATAATTATCAGAAAAGATTATAATAAATTATTTTCTACAATGTAAATTAATATTATTCCTAAAAATTGCTTTCCAAACCTTCAAATCACAATTTTCATTTAAAAACCCTATTGAGAAATTTAACGAAATCTGAAAAATGAGCATTTACGCTAGTTTTTAGTACCGAACAATTGCAAATTTTTTGCTGATTCTAAAAATATATAATTTGTTTCTATTCGATCAACAACAGATGGAGAAAATCAGATAAACTGATTTTGCTCCGCACACTACGCATATGCACGAGATGTGCGTCAACCGCCGCACTTTGCACATCTCGCGGCGCAAACACATGAGCCCTCCATCCCCTTGTCTATTTTCCGCTGACTATGGCAAAATTCGTCAAAAACTAAAAGTAGAACAGCATTAAAATGTCAGAAAGCGGAACGCAAATAAACCAAACACCCTCCTTTTTTCTTTCTCATCAKTAGTTTCCATTCTTGTGACGCGTTTTATTTTCCTATTTCAACAAACATTTTCTTTTGTCGAATAATTTATAATGTCTCTTTTGTCCTTCCTCTATTCCTTTTCGGCGACGATCCTTTCGCACCTTATCTGTTGATCCAACGCTTTTTTGCCACTTTTACGCGTTTTTTATTGCTTTTGGTGGGTGATTTTGCTTGAAAACTGCTTTAGTTGATACCGTCTTGGTTTCACAAGTGATCTGAAGATTTCTGAGAACTTGAAAAAGGATGTTTCGGTAGTTTAGATTGTTTTCTCTAGCAGGAACTCTTTATTTTTTTCTGCAAACCCCTTTGAAAAAGTATTAAAATCTGAAATTAGGGTTTTGAACTATTCAATGTTCATTTCAAAACATGTTTCTTTCTAGTCTTATAACCTTCGCCAGTGAAAAAAGCCTGACCTTATGAAAAACCGGCTCTAATAATCAACATCATTCATTTTTCTTTGTCTCTCCACCATCTTGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATTCGTCAAAAACTAAAAG</pcr_primer_p1>
		<pcr_primer_p2>AAGCGTTGGATCAACAGATA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CAAAATTCGTCAAAAACTAAAAGTAGAACAGCATTAAAATGTCAGAAAGCGGAACGCAAATAAACCAAACACCCTCCTTTTTTCTTTCTCATCAGTAGTTTCCATTCTTGTGACGCGTTTTATTTTCCTATTTCAACAAACATTTTCTTTTGTCGAATAATTTATAATGTCTCTTTTGTCCTTCCTCTATTCCTTTTCGGCGACGATCCTTTCGCACCTTATCTGTTGATCCAACGCTT</canonical_amplicon>
		<polymorphic_amplicon>CAAAATTCGTCAAAAACTAAAAGTAGAACAGCATTAAAATGTCAGAAAGCGGAACGCAAATAAACCAAACACCCTCCTTTTTTCTTTCTCATCAKTAGTTTCCATTCTTGTGACGCGTTTTATTTTCCTATTTCAACAAACATTTTCTTTTGTCGAATAATTTATAATGTCTCTTTTGTCCTTCCTCTATTCCTTTTCGGCGACGATCCTTTCGCACCTTATCTGTTGATCCAACGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18644</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>268898</contig_pos>
        <strand>+</strand>
        <context>AAAAAGCCTG[A/G]CCTTATGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAACATGTTTCTTTCTAGTCTTATAACCTTCGCCAGTGAAAAAAGCCTG</left_flank>
        <right_flank>CCTTATGAAAAACCGGCTCTAATAATCAACATCATTCATTTTTCTTTGTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCATTAAAATGTCAGAAAGCGGAACGCAAATAAACCAAACACCCTCCTTTTTTCTTTCTCATCAGTAGTTTCCATTCTTGTGACGCGTTTTATTTTCCTATTTCAACAAACATTTTCTTTTGTCGAATAATTTATAATGTCTCTTTTGTCCTTCCTCTATTCCTTTTCGGCGACGATCCTTTCGCACCTTATCTGTTGATCCAACGCTTTTTTGCCACTTTTACGCGTTTTTTATTGCTTTTGGTGGGTGATTTTGCTTGAAAACTGCTTTAGTTGATACCGTCTTGGTTTCACAAGTGATCTGAAGATTTCTGAGAACTTGAAAAAGGATGTTTCGGTAGTTTAGATTGTTTTCTCTAGCAGGAACTCTTTATTTTTTTCTGCAAACCCCTTTGAAAAAGTATTAAAATCTGAAATTAGGGTTTTGAACTATTCAATGTTCATTTCAAAACATGTTTCTTTCTAGTCTTATAACCTTCGCCAGTGAAAAAAGCCTGACCTTATGAAAAACCGGCTCTAATAATCAACATCATTCATTTTTCTTTGTCTCTCCACCATCTTGTTATTATTTTTATTGATTTTTCAGACCTCTCCTCCCGCTCTCTGTTCAGCCCACTCGCTGAGCGAGAAGATTGTGTTTACATTCGATTCTCTATCGCTCAACTATTATTGATCCGTTTCTCCAACTGTATATCTATTTTTATTTTTCCTTTTTTTTCAGGTTGTATCTTCACTCAAACTTGTCCCCGTTTTTCTTCCGGGCCGTGCTGGCTCCCGTCCGGACTGCCCCCCTATGAATGGCAAAACAGGTACGGTCTATCACGCGGGGTCATTATAGAGAGGGATAAATGGATATATTATCCCGAATAGTCAAAGTCAACAACAACCACAAGTTTGAAATTTCGTTTTGAAATCTTCGGAAGAAAAGAATAAACTTTGTTCCTAGTCCGCATAACCACCTGTTGACCTGTGGGTTTCAAACGCTCTTTGCTGTTTGG</canonical>
            <polymorphic>CAGCATTAAAATGTCAGAAAGCGGAACGCAAATAAACCAAACACCCTCCTTTTTTCTTTCTCATCAGTAGTTTCCATTCTTGTGACGCGTTTTATTTTCCTATTTCAACAAACATTTTCTTTTGTCGAATAATTTATAATGTCTCTTTTGTCCTTCCTCTATTCCTTTTCGGCGACGATCCTTTCGCACCTTATCTGTTGATCCAACGCTTTTTTGCCACTTTTACGCGTTTTTTATTGCTTTTGGTGGGTGATTTTGCTTGAAAACTGCTTTAGTTGATACCGTCTTGGTTTCACAAGTGATCTGAAGATTTCTGAGAACTTGAAAAAGGATGTTTCGGTAGTTTAGATTGTTTTCTCTAGCAGGAACTCTTTATTTTTTTCTGCAAACCCCTTTGAAAAAGTATTAAAATCTGAAATTAGGGTTTTGAACTATTCAATGTTCATTTCAAAACATGTTTCTTTCTAGTCTTATAACCTTCGCCAGTGAAAAAAGCCTGRCCTTATGAAAAACCGGCTCTAATAATCAACATCATTCATTTTTCTTTGTCTCTCCACCATCTTGTTATTATTTTTATTGATTTTTCAGACCTCTCCTCCCGCTCTCTGTTCAGCCCACTCGCTGAGCGAGAAGATTGTGTTTACATTCGATTCTCTATCGCTCAACTATTATTGATCCGTTTCTCCAACTGTATATCTATTTTTATTTTTCCTTTTTTTTCAGGTTGTATCTTCACTCAAACTTGTCCCCGTTTTTCTTCCGGGCCGTGCTGGCTCCCGTCCGGACTGCCCCCCTATGAATGGCAAAACAGGTACGGTCTATCACGCGGGGTCATTATAGAGAGGGATAAATGGATATATTATCCCGAATAGTCAAAGTCAACAACAACCACAAGTTTGAAATTTCGTTTTGAAATCTTCGGAAGAAAAGAATAAACTTTGTTCCTAGTCCGCATAACCACCTGTTGACCTGTGGGTTTCAAACGCTCTTTGCTGTTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGATTTCTGAGAACTTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGAGACAAAGAAAAATGAATGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAGATTTCTGAGAACTTGAAAAAGGATGTTTCGGTAGTTTAGATTGTTTTCTCTAGCAGGAACTCTTTATTTTTTTCTGCAAACCCCTTTGAAAAAGTATTAAAATCTGAAATTAGGGTTTTGAACTATTCAATGTTCATTTCAAAACATGTTTCTTTCTAGTCTTATAACCTTCGCCAGTGAAAAAAGCCTGACCTTATGAAAAACCGGCTCTAATAATCAACATCATTCATTTTTCTTTGTCTCTC</canonical_amplicon>
		<polymorphic_amplicon>GAAGATTTCTGAGAACTTGAAAAAGGATGTTTCGGTAGTTTAGATTGTTTTCTCTAGCAGGAACTCTTTATTTTTTTCTGCAAACCCCTTTGAAAAAGTATTAAAATCTGAAATTAGGGTTTTGAACTATTCAATGTTCATTTCAAAACATGTTTCTTTCTAGTCTTATAACCTTCGCCAGTGAAAAAAGCCTGRCCTTATGAAAAACCGGCTCTAATAATCAACATCATTCATTTTTCTTTGTCTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18645</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>268976</contig_pos>
        <strand>+</strand>
        <context>TTATTTTTAT[C/T]GATTTTTCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACATCATTCATTTTTCTTTGTCTCTCCACCATCTTGTTATTATTTTTAT</left_flank>
        <right_flank>GATTTTTCAGACCTCTCCTCCCGCTCTCTGTTCAGCCCACTCGCTGAGCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGTGACGCGTTTTATTTTCCTATTTCAACAAACATTTTCTTTTGTCGAATAATTTATAATGTCTCTTTTGTCCTTCCTCTATTCCTTTTCGGCGACGATCCTTTCGCACCTTATCTGTTGATCCAACGCTTTTTTGCCACTTTTACGCGTTTTTTATTGCTTTTGGTGGGTGATTTTGCTTGAAAACTGCTTTAGTTGATACCGTCTTGGTTTCACAAGTGATCTGAAGATTTCTGAGAACTTGAAAAAGGATGTTTCGGTAGTTTAGATTGTTTTCTCTAGCAGGAACTCTTTATTTTTTTCTGCAAACCCCTTTGAAAAAGTATTAAAATCTGAAATTAGGGTTTTGAACTATTCAATGTTCATTTCAAAACATGTTTCTTTCTAGTCTTATAACCTTCGCCAGTGAAAAAAGCCTGACCTTATGAAAAACCGGCTCTAATAATCAACATCATTCATTTTTCTTTGTCTCTCCACCATCTTGTTATTATTTTTATTGATTTTTCAGACCTCTCCTCCCGCTCTCTGTTCAGCCCACTCGCTGAGCGAGAAGATTGTGTTTACATTCGATTCTCTATCGCTCAACTATTATTGATCCGTTTCTCCAACTGTATATCTATTTTTATTTTTCCTTTTTTTTCAGGTTGTATCTTCACTCAAACTTGTCCCCGTTTTTCTTCCGGGCCGTGCTGGCTCCCGTCCGGACTGCCCCCCTATGAATGGCAAAACAGGTACGGTCTATCACGCGGGGTCATTATAGAGAGGGATAAATGGATATATTATCCCGAATAGTCAAAGTCAACAACAACCACAAGTTTGAAATTTCGTTTTGAAATCTTCGGAAGAAAAGAATAAACTTTGTTCCTAGTCCGCATAACCACCTGTTGACCTGTGGGTTTCAAACGCTCTTTGCTGTTTGGCACGTTTTGTCAATACGCCTATTGATCAGTTGTTTGTCATGATCTTTAATCTATATGTACGCTACGTCAGATATTATT</canonical>
            <polymorphic>CTTGTGACGCGTTTTATTTTCCTATTTCAACAAACATTTTCTTTTGTCGAATAATTTATAATGTCTCTTTTGTCCTTCCTCTATTCCTTTTCGGCGACGATCCTTTCGCACCTTATCTGTTGATCCAACGCTTTTTTGCCACTTTTACGCGTTTTTTATTGCTTTTGGTGGGTGATTTTGCTTGAAAACTGCTTTAGTTGATACCGTCTTGGTTTCACAAGTGATCTGAAGATTTCTGAGAACTTGAAAAAGGATGTTTCGGTAGTTTAGATTGTTTTCTCTAGCAGGAACTCTTTATTTTTTTCTGCAAACCCCTTTGAAAAAGTATTAAAATCTGAAATTAGGGTTTTGAACTATTCAATGTTCATTTCAAAACATGTTTCTTTCTAGTCTTATAACCTTCGCCAGTGAAAAAAGCCTGACCTTATGAAAAACCGGCTCTAATAATCAACATCATTCATTTTTCTTTGTCTCTCCACCATCTTGTTATTATTTTTATYGATTTTTCAGACCTCTCCTCCCGCTCTCTGTTCAGCCCACTCGCTGAGCGAGAAGATTGTGTTTACATTCGATTCTCTATCGCTCAACTATTATTGATCCGTTTCTCCAACTGTATATCTATTTTTATTTTTCCTTTTTTTTCAGGTTGTATCTTCACTCAAACTTGTCCCCGTTTTTCTTCCGGGCCGTGCTGGCTCCCGTCCGGACTGCCCCCCTATGAATGGCAAAACAGGTACGGTCTATCACGCGGGGTCATTATAGAGAGGGATAAATGGATATATTATCCCGAATAGTCAAAGTCAACAACAACCACAAGTTTGAAATTTCGTTTTGAAATCTTCGGAAGAAAAGAATAAACTTTGTTCCTAGTCCGCATAACCACCTGTTGACCTGTGGGTTTCAAACGCTCTTTGCTGTTTGGCACGTTTTGTCAATACGCCTATTGATCAGTTGTTTGTCATGATCTTTAATCTATATGTACGCTACGTCAGATATTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCAATGTTCATTTCAAAACAT</pcr_primer_p1>
		<pcr_primer_p2>GGATCAATAATAGTTGAGCGATA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATTCAATGTTCATTTCAAAACATGTTTCTTTCTAGTCTTATAACCTTCGCCAGTGAAAAAAGCCTGACCTTATGAAAAACCGGCTCTAATAATCAACATCATTCATTTTTCTTTGTCTCTCCACCATCTTGTTATTATTTTTATTGATTTTTCAGACCTCTCCTCCCGCTCTCTGTTCAGCCCACTCGCTGAGCGAGAAGATTGTGTTTACATTCGATTCTCTATCGCTCAACTATTATTGATCC</canonical_amplicon>
		<polymorphic_amplicon>ATTCAATGTTCATTTCAAAACATGTTTCTTTCTAGTCTTATAACCTTCGCCAGTGAAAAAAGCCTGACCTTATGAAAAACCGGCTCTAATAATCAACATCATTCATTTTTCTTTGTCTCTCCACCATCTTGTTATTATTTTTATYGATTTTTCAGACCTCTCCTCCCGCTCTCTGTTCAGCCCACTCGCTGAGCGAGAAGATTGTGTTTACATTCGATTCTCTATCGCTCAACTATTATTGATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18646</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>269102</contig_pos>
        <strand></strand>
        <context>TATCTAYTTT[T/C]ATTTTTCCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCTATCGCTCAACTATTATTGATCCGTTTCTCCAACTGTATATCTATTTT</left_flank>
        <right_flank>ATTTTTCCTTTTTTTTCAGGTTGTATCTTCACTCAAACTTGTCCCCGTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGCTTTTTTGCCACTTTTACGCGTTTTTTATTGCTTTTGGTGGGTGATTTTGCTTGAAAACTGCTTTAGTTGATACCGTCTTGGTTTCACAAGTGATCTGAAGATTTCTGAGAACTTGAAAAAGGATGTTTCGGTAGTTTAGATTGTTTTCTCTAGCAGGAACTCTTTATTTTTTTCTGCAAACCCCTTTGAAAAAGTATTAAAATCTGAAATTAGGGTTTTGAACTATTCAATGTTCATTTCAAAACATGTTTCTTTCTAGTCTTATAACCTTCGCCAGTGAAAAAAGCCTGACCTTATGAAAAACCGGCTCTAATAATCAACATCATTCATTTTTCTTTGTCTCTCCACCATCTTGTTATTATTTTTATTGATTTTTCAGACCTCTCCTCCCGCTCTCTGTTCAGCCCACTCGCTGAGCGAGAAGATTGTGTTTACATTCGATTCTCTATCGCTCAACTATTATTGATCCGTTTCTCCAACTGTATATCTATTTTTATTTTTCCTTTTTTTTCAGGTTGTATCTTCACTCAAACTTGTCCCCGTTTTTCTTCCGGGCCGTGCTGGCTCCCGTCCGGACTGCCCCCCTATGAATGGCAAAACAGGTACGGTCTATCACGCGGGGTCATTATAGAGAGGGATAAATGGATATATTATCCCGAATAGTCAAAGTCAACAACAACCACAAGTTTGAAATTTCGTTTTGAAATCTTCGGAAGAAAAGAATAAACTTTGTTCCTAGTCCGCATAACCACCTGTTGACCTGTGGGTTTCAAACGCTCTTTGCTGTTTGGCACGTTTTGTCAATACGCCTATTGATCAGTTGTTTGTCATGATCTTTAATCTATATGTACGCTACGTCAGATATTATTCATGATTTCAATTTCTACAAGAAGGTCAGATGAGAAAGTTAGTTTTATTTGAAGAATCAAAACCACTTGGCAATCTTTATAGACATTGAAATCCTTTTAAGATAAGATAAAAAAGAAGCAAAACTC</canonical>
            <polymorphic>AACGCTTTTTTGCCACTTTTACGCGTTTTTTATTGCTTTTGGTGGGTGATTTTGCTTGAAAACTGCTTTAGTTGATACCGTCTTGGTTTCACAAGTGATCTGAAGATTTCTGAGAACTTGAAAAAGGATGTTTCGGTAGTTTAGATTGTTTTCTCTAGCAGGAACTCTTTATTTTTTTCTGCAAACCCCTTTGAAAAAGTATTAAAATCTGAAATTAGGGTTTTGAACTATTCAATGTTCATTTCAAAACATGTTTCTTTCTAGTCTTATAACCTTCGCCAGTGAAAAAAGCCTGACCTTATGAAAAACCGGCTCTAATAATCAACATCATTCATTTTTCTTTGTCTCTCCACCATCTTGTTATTATTTTTATTGATTTTTCAGACCTCTCCTCCCGCTCTCTGTTCAGCCCACTCGCTGAGCGAGAAGATTGTGTTTACATTCGATTCTCTATCGCTCAACTATTATTGATCCGTTTCTCCAACTGTATATCTATTTTYATTTTTCCTTTTTTTTCAGGTTGTATCTTCACTCAAACTTGTCCCCGTTTTTCTTCCGGGCCGTGCTGGCTCCCGTCCGGACTGCCCCCCTATGAATGGCAAAACAGGTACGGTCTATCACGCGGGGTCATTATAGAGAGGGATAAATGGATATATTATCCCGAATAGTCAAAGTCAACAACAACCACAAGTTTGAAATTTCGTTTTGAAATCTTCGGAAGAAAAGAATAAACTTTGTTCCTAGTCCGCATAACCACCTGTTGACCTGTGGGTTTCAAACGCTCTTTGCTGTTTGGCACGTTTTGTCAATACGCCTATTGATCAGTTGTTTGTCATGATCTTTAATCTATATGTACGCTACGTCAGATATTATTCATGATTTCAATTTCTACAAGAAGGTCAGATGAGAAAGTTAGTTTTATTTGAAGAATCAAAACCACTTGGCAATCTTTATAGACATTGAAATCCTTTTAAGATAAGATAAAAAAGAAGCAAAACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGATTGTGTTTACATTCGATTC</pcr_primer_p1>
		<pcr_primer_p2>GACTTTGACTATTCGGGATAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGATTGTGTTTACATTCGATTCTCTATCGCTCAACTATTATTGATCCGTTTCTCCAACTGTATATCTATTTTTATTTTTCCTTTTTTTTCAGGTTGTATCTTCACTCAAACTTGTCCCCGTTTTTCTTCCGGGCCGTGCTGGCTCCCGTCCGGACTGCCCCCCTATGAATGGCAAAACAGGTACGGTCTATCACGCGGGGTCATTATAGAGAGGGATAAATGGATATATTATCCCGAATAGTCAAAGTC</canonical_amplicon>
		<polymorphic_amplicon>AAGATTGTGTTTACATTCGATTCTCTATCGCTCAACTATTATTGATCCGTTTCTCCAACTGTATATCTATTTTYATTTTTCCTTTTTTTTCAGGTTGTATCTTCACTCAAACTTGTCCCCGTTTTTCTTCCGGGCCGTGCTGGCTCCCGTCCGGACTGCCCCCCTATGAATGGCAAAACAGGTACGGTCTATCACGCGGGGTCATTATAGAGAGGGATAAATGGATATATTATCCCGAATAGTCAAAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18647</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>270646</contig_pos>
        <strand>+</strand>
        <context>ATATTCGTCT[C/T]ATGAATGGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGTGTGACCTGCCAGGATTGTTATCCAATAATCAGATCGATATTCGTCT</left_flank>
        <right_flank>ATGAATGGATTCGCAGAGGAGGTTGCAAAATGTAAAGAATTCTTGATGGA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAATTTTTAATCTAGATCTGTTTTATACCCTTCCAAATTTTCAAAATGATCGGAAACTCGATAGCCAAGCTCTAGGCTTCTGAAAATGATCGAAGTTACCAAACATCAACAATAATTGAGAACAAAAAAAATTTTAGATGCAAGAGACGCGGAAGTTGTTGACCATGCAGTTGCTGGCAACTGGGAAAATCACTTCGGCAGAGATACAAATTCTAAAGAGAACACTAGAGGTAATCGCTTGGATCACTATATATCCGTTTATTTTGAATTTCAGGAAATGCAAGACGAGCGGACAACAGACTTCTACATTCGACACATTCACTCAAGGGGAGCCACATTTGCCATTAACATCAGAGATGAGATTTTGGGACTTAAGAAGGATTTTTTGTTCTTGGAGAACTTTGCGTCAGAGTGTGAAAGCGAAGAATCGTTTACGAATAGACTAAAGCTGTGTGACCTGCCAGGATTGTTATCCAATAATCAGATCGATATTCGTCTCATGAATGGATTCGCAGAGGAGGTTGCAAAATGTAAAGAATTCTTGATGGATTTGATCACGATTGAGTCTGATGGAATTAAGCCACTTTTTATCACCGACTGGGATGGAACCATGAAAGATTATTGCTCTCAGTACGCCACTAACTTGCAGGTGAGTCCAGATTACTTTAAAACCTGCAATAGAAGGGCTCCCGCACTGTCAAGATTAAGCTAATTTCTCTTTGCTCCTCTGCAAAATATCAAAAATGCATCAACTAATACAATGTTTGTGATATTATAACAGGCAATTTATCCGTTAACATCATTTTTATATTTTTCACAAGAACCGTGATGAATCAGCTCAAAGATAAAAGTTAGGGGGCCTTCCTATTGTTTCACGGTAGTTGTAATATAAAAACCAGGAATCTAATAAATCCTATTTCCAGCCAGCCTACAGTGCTATTGTCATGGGAGTATTCGCAAGAAACTTTACTCGCGCCTTTGCTGTCCTCACTGCTGGCC</canonical>
            <polymorphic>GTAATTTTTAATCTAGATCTGTTTTATACCCTTCCAAATTTTCAAAATGATCGGAAACTCGATAGCCAAGCTCTAGGCTTCTGAAAATGATCGAAGTTACCAAACATCAACAATAATTGAGAACAAAAAAAATTTTAGATGCAAGAGACGCGGAAGTTGTTGACCATGCAGTTGCTGGCAACTGGGAAAATCACTTCGGCAGAGATACAAATTCTAAAGAGAACACTAGAGGTAATCGCTTGGATCACTATATATCCGTTTATTTTGAATTTCAGGAAATGCAAGACGAGCGGACAACAGACTTCTACATTCGACACATTCACTCAAGGGGAGCCACATTTGCCATTAACATCAGAGATGAGATTTTGGGACTTAAGAAGGATTTTTTGTTCTTGGAGAACTTTGCGTCAGAGTGTGAAAGCGAAGAATCGTTTACGAATAGACTAAAGCTGTGTGACCTGCCAGGATTGTTATCCAATAATCAGATCGATATTCGTCTYATGAATGGATTCGCAGAGGAGGTTGCAAAATGTAAAGAATTCTTGATGGATTTGATCACGATTGAGTCTGATGGAATTAAGCCACTTTTTATCACCGACTGGGATGGAACCATGAAAGATTATTGCTCTCAGTACGCCACTAACTTGCAGGTGAGTCCAGATTACTTTAAAACCTGCAATAGAAGGGCTCCCGCACTGTCAAGATTAAGCTAATTTCTCTTTGCTCCTCTGCAAAATATCAAAAATGCATCAACTAATACAATGTTTGTGATATTATAACAGGCAATTTATCCGTTAACATCATTTTTATATTTTTCACAAGAACCGTGATGAATCAGCTCAAAGATAAAAGTTAGGGGGCCTTCCTATTGTTTCACGGTAGTTGTAATATAAAAACCAGGAATCTAATAAATCCTATTTCCAGCCAGCCTACAGTGCTATTGTCATGGGAGTATTCGCAAGAAACTTTACTCGCGCCTTTGCTGTCCTCACTGCTGGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>335 334 165 111 55</canonical_bands>
                <polymorphic_bands>446 334 165 55</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>300 260 227 100 43 42 15 13</canonical_bands>
                <polymorphic_bands>300 269 260 100 43 15 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATTAACATCAGAGATGAGATT</pcr_primer_p1>
		<pcr_primer_p2>GGTGATAAAAAGTGGCTTAATTC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CCATTAACATCAGAGATGAGATTTTGGGACTTAAGAAGGATTTTTTGTTCTTGGAGAACTTTGCGTCAGAGTGTGAAAGCGAAGAATCGTTTACGAATAGACTAAAGCTGTGTGACCTGCCAGGATTGTTATCCAATAATCAGATCGATATTCGTCTCATGAATGGATTCGCAGAGGAGGTTGCAAAATGTAAAGAATTCTTGATGGATTTGATCACGATTGAGTCTGATGGAATTAAGCCACTTTTTATCACC</canonical_amplicon>
		<polymorphic_amplicon>CCATTAACATCAGAGATGAGATTTTGGGACTTAAGAAGGATTTTTTGTTCTTGGAGAACTTTGCGTCAGAGTGTGAAAGCGAAGAATCGTTTACGAATAGACTAAAGCTGTGTGACCTGCCAGGATTGTTATCCAATAATCAGATCGATATTCGTCTYATGAATGGATTCGCAGAGGAGGTTGCAAAATGTAAAGAATTCTTGATGGATTTGATCACGATTGAGTCTGATGGAATTAAGCCACTTTTTATCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18648</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>270277</contig_pos>
        <strand>+</strand>
        <context>GAACAAAAAA[A/C]ATTTTAGATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGAAAATGATCGAAGTTACCAAACATCAACAATAATTGAGAACAAAAAA</left_flank>
        <right_flank>ATTTTAGATGCAAGAGACGCGGAAGTTGTTGACCATGCAGTTGCTGGCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGAAGAATTCAAAGAATGTTTATATCACGTGAGTTCATTCTCTTTTTTTCAAAATTTTTAACATACAGTAGTGTCAATAAGATTAGAAAAACGTCCTTTTCAGCTAATTTTTGGCCATTTTGACAATTTTCAAGTGTCTAGTGCTCGGCTGTAAACTTTCCGATAACTTTGAAATTTTCAACGGATGTAAAACGAACCTAGTTTGAAAATTTTGCATGCTCAATATTTTTTTTAAATTCCTAATTTTGAGCTATTAGCAGATTTCTGAAAGACACGCATTTCTGCACTGTGAAGGTGAATAAGCAGGCGTCTTCTAGAAAACGCGAATAATTGAAAAACTAGGAATCTTTGGAAAATTCTATAAATGGTAATTTTTAATCTAGATCTGTTTTATACCCTTCCAAATTTTCAAAATGATCGGAAACTCGATAGCCAAGCTCTAGGCTTCTGAAAATGATCGAAGTTACCAAACATCAACAATAATTGAGAACAAAAAAAATTTTAGATGCAAGAGACGCGGAAGTTGTTGACCATGCAGTTGCTGGCAACTGGGAAAATCACTTCGGCAGAGATACAAATTCTAAAGAGAACACTAGAGGTAATCGCTTGGATCACTATATATCCGTTTATTTTGAATTTCAGGAAATGCAAGACGAGCGGACAACAGACTTCTACATTCGACACATTCACTCAAGGGGAGCCACATTTGCCATTAACATCAGAGATGAGATTTTGGGACTTAAGAAGGATTTTTTGTTCTTGGAGAACTTTGCGTCAGAGTGTGAAAGCGAAGAATCGTTTACGAATAGACTAAAGCTGTGTGACCTGCCAGGATTGTTATCCAATAATCAGATCGATATTCGTCTCATGAATGGATTCGCAGAGGAGGTTGCAAAATGTAAAGAATTCTTGATGGATTTGATCACGATTGAGTCTGATGGAATTAAGCCACTTTTTATCACCGACTGGGATGGAACCATGAAAGATTATTGCTCTCA</canonical>
            <polymorphic>ATTGAAGAATTCAAAGAATGTTTATATCACGTGAGTTCATTCTCTTTTTTTCAAAATTTTTAACATACAGTAGTGTCAATAAGATTAGAAAAACGTCCTTTTCAGCTAATTTTTGGCCATTTTGACAATTTTCAAGTGTCTAGTGCTCGGCTGTAAACTTTCCGATAACTTTGAAATTTTCAACGGATGTAAAACGAACCTAGTTTGAAAATTTTGCATGCTCAATATTTTTTTTAAATTCCTAATTTTGAGCTATTAGCAGATTTCTGAAAGACACGCATTTCTGCACTGTGAAGGTGAATAAGCAGGCGTCTTCTAGAAAACGCGAATAATTGAAAAACTAGGAATCTTTGGAAAATTCTATAAATGGTAATTTTTAATCTAGATCTGTTTTATACCCTTCCAAATTTTCAAAATGATCGGAAACTCGATAGCCAAGCTCTAGGCTTCTGAAAATGATCGAAGTTACCAAACATCAACAATAATTGAGAACAAAAAAMATTTTAGATGCAAGAGACGCGGAAGTTGTTGACCATGCAGTTGCTGGCAACTGGGAAAATCACTTCGGCAGAGATACAAATTCTAAAGAGAACACTAGAGGTAATCGCTTGGATCACTATATATCCGTTTATTTTGAATTTCAGGAAATGCAAGACGAGCGGACAACAGACTTCTACATTCGACACATTCACTCAAGGGGAGCCACATTTGCCATTAACATCAGAGATGAGATTTTGGGACTTAAGAAGGATTTTTTGTTCTTGGAGAACTTTGCGTCAGAGTGTGAAAGCGAAGAATCGTTTACGAATAGACTAAAGCTGTGTGACCTGCCAGGATTGTTATCCAATAATCAGATCGATATTCGTCTCATGAATGGATTCGCAGAGGAGGTTGCAAAATGTAAAGAATTCTTGATGGATTTGATCACGATTGAGTCTGATGGAATTAAGCCACTTTTTATCACCGACTGGGATGGAACCATGAAAGATTATTGCTCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>270 120 120 94 94 79 58 49 47 35 27 7</canonical_bands>
                <polymorphic_bands>270 173 120 120 94 58 49 47 35 27 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>270 87 79 78 58 57 53 48 47 37 35 34 27 26 19 16 15 7 7</canonical_bands>
                <polymorphic_bands>270 95 87 78 58 57 53 48 47 37 35 34 27 26 19 15 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACGTGAGTTCATTCTCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTATCTCTGCCGAAGTGATTT</pcr_primer_p2>
		<pcr_amplicon_size>550</pcr_amplicon_size>
		<canonical_amplicon>CACGTGAGTTCATTCTCTTTTTTTCAAAATTTTTAACATACAGTAGTGTCAATAAGATTAGAAAAACGTCCTTTTCAGCTAATTTTTGGCCATTTTGACAATTTTCAAGTGTCTAGTGCTCGGCTGTAAACTTTCCGATAACTTTGAAATTTTCAACGGATGTAAAACGAACCTAGTTTGAAAATTTTGCATGCTCAATATTTTTTTTAAATTCCTAATTTTGAGCTATTAGCAGATTTCTGAAAGACACGCATTTCTGCACTGTGAAGGTGAATAAGCAGGCGTCTTCTAGAAAACGCGAATAATTGAAAAACTAGGAATCTTTGGAAAATTCTATAAATGGTAATTTTTAATCTAGATCTGTTTTATACCCTTCCAAATTTTCAAAATGATCGGAAACTCGATAGCCAAGCTCTAGGCTTCTGAAAATGATCGAAGTTACCAAACATCAACAATAATTGAGAACAAAAAAAATTTTAGATGCAAGAGACGCGGAAGTTGTTGACCATGCAGTTGCTGGCAACTGGGAAAATCACTTCGGCAGAGATAC</canonical_amplicon>
		<polymorphic_amplicon>CACGTGAGTTCATTCTCTTTTTTTCAAAATTTTTAACATACAGTAGTGTCAATAAGATTAGAAAAACGTCCTTTTCAGCTAATTTTTGGCCATTTTGACAATTTTCAAGTGTCTAGTGCTCGGCTGTAAACTTTCCGATAACTTTGAAATTTTCAACGGATGTAAAACGAACCTAGTTTGAAAATTTTGCATGCTCAATATTTTTTTTAAATTCCTAATTTTGAGCTATTAGCAGATTTCTGAAAGACACGCATTTCTGCACTGTGAAGGTGAATAAGCAGGCGTCTTCTAGAAAACGCGAATAATTGAAAAACTAGGAATCTTTGGAAAATTCTATAAATGGTAATTTTTAATCTAGATCTGTTTTATACCCTTCCAAATTTTCAAAATGATCGGAAACTCGATAGCCAAGCTCTAGGCTTCTGAAAATGATCGAAGTTACCAAACATCAACAATAATTGAGAACAAAAAAMATTTTAGATGCAAGAGACGCGGAAGTTGTTGACCATGCAGTTGCTGGCAACTGGGAAAATCACTTCGGCAGAGATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18649</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>324977</contig_pos>
        <strand>+</strand>
        <context>TTCGAGAAAA[A/C]ATGTTTCAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTGATCGGAAGTTTCAGGCAACACTTCGACATTCAATATTTCGAGAAAA</left_flank>
        <right_flank>ATGTTTCAATGGAGACGAACATAGGGGTCGGGCTACATAACAATCTTTGA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAACAATCTGTCTAATAATGATGACACGTCATTCGCACAACTCATCTCAGATGTTTTTCGACCCTTTTTGCGCAACAAGAAACTCTCGCACCCAATCTTATCGTCCCGTCGGGGTAGTTTCAAAACAGTTGCATCACTGGGACAATGGTTCGTCTGATCTCTTGAACCATCTCCTTTATCTGTTCCTATCTGTCTGGCAGCCGTTCTTTTCCACCACCACGTGTATATTAAAAGTGATGTCATTGGCATATATTCTAGCACACTGTCTGTTTGCAATCATAAGACCTTGCAATATACGGGGAAGAATTTTTTCTGCTGTTGCTTCTCTAGGAGAGGGAATAGCATCATAATCCTAGAAAAGACCAGCGGTTTTTCTGCTGCTTTTCGTTTTCGACATTCACTTCCGATGTGATAAAAACGCTAAAACGCTACTTTGTGTCTTCTCGTGTTTGATCGGAAGTTTCAGGCAACACTTCGACATTCAATATTTCGAGAAAACATGTTTCAATGGAGACGAACATAGGGGTCGGGCTACATAACAATCTTTGACTCTAGTCAACATCGTGTACGAAACTTTACAAATCATAAAAAATAGGACCTAGTTTTGACCGTATACACACACCCACGCGCAGTTGTAAAATGTAGCGCAAATCGGATCGAGGGATTCTGATCATACCACAAAAAAAATAATAATCGCCCCGCTTTATGAATGAAATGACGAATTTTTTTCTTGGCCGATTTTGAACAAAACGATTTTTGTTCCAAATCTAAAACACAACGGTTATAAAAAACTTGAAAACAAGTTAGGAACAAGTTTGAAACATCAGTTGTATGAAAATATTGAATATGAGGGATCTCTCACCTGGAGGTACTCGAGTTTGGCTTGTCGGAACATTTCTAGCATAAGGTCAAACTGTTGAGTACGGTTCATGGTGACAGTAAAGGCACGACGCATGTAGAGCTGAAAATTAGTTGAAAATTTATTGAATGCCATAAAAA</canonical>
            <polymorphic>TCAACAATCTGTCTAATAATGATGACACGTCATTCGCACAACTCATCTCAGATGTTTTTCGACCCTTTTTGCGCAACAAGAAACTCTCGCACCCAATCTTATCGTCCCGTCGGGGTAGTTTCAAAACAGTTGCATCACTGGGACAATGGTTCGTCTGATCTCTTGAACCATCTCCTTTATCTGTTCCTATCTGTCTGGCAGCCGTTCTTTTCCACCACCACGTGTATATTAAAAGTGATGTCATTGGCATATATTCTAGCACACTGTCTGTTTGCAATCATAAGACCTTGCAATATACGGGGAAGAATTTTTTCTGCTGTTGCTTCTCTAGGAGAGGGAATAGCATCATAATCCTAGAAAAGACCAGCGGTTTTTCTGCTGCTTTTCGTTTTCGACATTCACTTCCGATGTGATAAAAACGCTAAAACGCTACTTTGTGTCTTCTCGTGTTTGATCGGAAGTTTCAGGCAACACTTCGACATTCAATATTTCGAGAAAAMATGTTTCAATGGAGACGAACATAGGGGTCGGGCTACATAACAATCTTTGACTCTAGTCAACATCGTGTACGAAACTTTACAAATCATAAAAAATAGGACCTAGTTTTGACCGTATACACACACCCACGCGCAGTTGTAAAATGTAGCGCAAATCGGATCGAGGGATTCTGATCATACCACAAAAAAAATAATAATCGCCCCGCTTTATGAATGAAATGACGAATTTTTTTCTTGGCCGATTTTGAACAAAACGATTTTTGTTCCAAATCTAAAACACAACGGTTATAAAAAACTTGAAAACAAGTTAGGAACAAGTTTGAAACATCAGTTGTATGAAAATATTGAATATGAGGGATCTCTCACCTGGAGGTACTCGAGTTTGGCTTGTCGGAACATTTCTAGCATAAGGTCAAACTGTTGAGTACGGTTCATGGTGACAGTAAAGGCACGACGCATGTAGAGCTGAAAATTAGTTGAAAATTTATTGAATGCCATAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 279 195 25</canonical_bands>
                <polymorphic_bands>780 195 25</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>503 454 43</canonical_bands>
                <polymorphic_bands>957 43</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 430 46 24</canonical_bands>
                <polymorphic_bands>930 46 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCTCTAGGAGAGGGAATAGC</pcr_primer_p1>
		<pcr_primer_p2>TCGTACACGATGTTGACTAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCTCTAGGAGAGGGAATAGCATCATAATCCTAGAAAAGACCAGCGGTTTTTCTGCTGCTTTTCGTTTTCGACATTCACTTCCGATGTGATAAAAACGCTAAAACGCTACTTTGTGTCTTCTCGTGTTTGATCGGAAGTTTCAGGCAACACTTCGACATTCAATATTTCGAGAAAACATGTTTCAATGGAGACGAACATAGGGGTCGGGCTACATAACAATCTTTGACTCTAGTCAACATCGTGTACGA</canonical_amplicon>
		<polymorphic_amplicon>CTTCTCTAGGAGAGGGAATAGCATCATAATCCTAGAAAAGACCAGCGGTTTTTCTGCTGCTTTTCGTTTTCGACATTCACTTCCGATGTGATAAAAACGCTAAAACGCTACTTTGTGTCTTCTCGTGTTTGATCGGAAGTTTCAGGCAACACTTCGACATTCAATATTTCGAGAAAAMATGTTTCAATGGAGACGAACATAGGGGTCGGGCTACATAACAATCTTTGACTCTAGTCAACATCGTGTACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18650</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>324992</contig_pos>
        <strand>+</strand>
        <context>TTCAATGGAG[A/G]CGAACATAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGGCAACACTTCGACATTCAATATTTCGAGAAAACATGTTTCAATGGAG</left_flank>
        <right_flank>CGAACATAGGGGTCGGGCTACATAACAATCTTTGACTCTAGTCAACATCG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAATGATGACACGTCATTCGCACAACTCATCTCAGATGTTTTTCGACCCTTTTTGCGCAACAAGAAACTCTCGCACCCAATCTTATCGTCCCGTCGGGGTAGTTTCAAAACAGTTGCATCACTGGGACAATGGTTCGTCTGATCTCTTGAACCATCTCCTTTATCTGTTCCTATCTGTCTGGCAGCCGTTCTTTTCCACCACCACGTGTATATTAAAAGTGATGTCATTGGCATATATTCTAGCACACTGTCTGTTTGCAATCATAAGACCTTGCAATATACGGGGAAGAATTTTTTCTGCTGTTGCTTCTCTAGGAGAGGGAATAGCATCATAATCCTAGAAAAGACCAGCGGTTTTTCTGCTGCTTTTCGTTTTCGACATTCACTTCCGATGTGATAAAAACGCTAAAACGCTACTTTGTGTCTTCTCGTGTTTGATCGGAAGTTTCAGGCAACACTTCGACATTCAATATTTCGAGAAAACATGTTTCAATGGAGACGAACATAGGGGTCGGGCTACATAACAATCTTTGACTCTAGTCAACATCGTGTACGAAACTTTACAAATCATAAAAAATAGGACCTAGTTTTGACCGTATACACACACCCACGCGCAGTTGTAAAATGTAGCGCAAATCGGATCGAGGGATTCTGATCATACCACAAAAAAAATAATAATCGCCCCGCTTTATGAATGAAATGACGAATTTTTTTCTTGGCCGATTTTGAACAAAACGATTTTTGTTCCAAATCTAAAACACAACGGTTATAAAAAACTTGAAAACAAGTTAGGAACAAGTTTGAAACATCAGTTGTATGAAAATATTGAATATGAGGGATCTCTCACCTGGAGGTACTCGAGTTTGGCTTGTCGGAACATTTCTAGCATAAGGTCAAACTGTTGAGTACGGTTCATGGTGACAGTAAAGGCACGACGCATGTAGAGCTGAAAATTAGTTGAAAATTTATTGAATGCCATAAAAAAATAATATTCAATTT</canonical>
            <polymorphic>ATAATGATGACACGTCATTCGCACAACTCATCTCAGATGTTTTTCGACCCTTTTTGCGCAACAAGAAACTCTCGCACCCAATCTTATCGTCCCGTCGGGGTAGTTTCAAAACAGTTGCATCACTGGGACAATGGTTCGTCTGATCTCTTGAACCATCTCCTTTATCTGTTCCTATCTGTCTGGCAGCCGTTCTTTTCCACCACCACGTGTATATTAAAAGTGATGTCATTGGCATATATTCTAGCACACTGTCTGTTTGCAATCATAAGACCTTGCAATATACGGGGAAGAATTTTTTCTGCTGTTGCTTCTCTAGGAGAGGGAATAGCATCATAATCCTAGAAAAGACCAGCGGTTTTTCTGCTGCTTTTCGTTTTCGACATTCACTTCCGATGTGATAAAAACGCTAAAACGCTACTTTGTGTCTTCTCGTGTTTGATCGGAAGTTTCAGGCAACACTTCGACATTCAATATTTCGAGAAAACATGTTTCAATGGAGRCGAACATAGGGGTCGGGCTACATAACAATCTTTGACTCTAGTCAACATCGTGTACGAAACTTTACAAATCATAAAAAATAGGACCTAGTTTTGACCGTATACACACACCCACGCGCAGTTGTAAAATGTAGCGCAAATCGGATCGAGGGATTCTGATCATACCACAAAAAAAATAATAATCGCCCCGCTTTATGAATGAAATGACGAATTTTTTTCTTGGCCGATTTTGAACAAAACGATTTTTGTTCCAAATCTAAAACACAACGGTTATAAAAAACTTGAAAACAAGTTAGGAACAAGTTTGAAACATCAGTTGTATGAAAATATTGAATATGAGGGATCTCTCACCTGGAGGTACTCGAGTTTGGCTTGTCGGAACATTTCTAGCATAAGGTCAAACTGTTGAGTACGGTTCATGGTGACAGTAAAGGCACGACGCATGTAGAGCTGAAAATTAGTTGAAAATTTATTGAATGCCATAAAAAAATAATATTCAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTCTAGGAGAGGGAATAGC</pcr_primer_p1>
		<pcr_primer_p2>TCGTACACGATGTTGACTAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCTCTAGGAGAGGGAATAGCATCATAATCCTAGAAAAGACCAGCGGTTTTTCTGCTGCTTTTCGTTTTCGACATTCACTTCCGATGTGATAAAAACGCTAAAACGCTACTTTGTGTCTTCTCGTGTTTGATCGGAAGTTTCAGGCAACACTTCGACATTCAATATTTCGAGAAAACATGTTTCAATGGAGACGAACATAGGGGTCGGGCTACATAACAATCTTTGACTCTAGTCAACATCGTGTACGA</canonical_amplicon>
		<polymorphic_amplicon>CTTCTCTAGGAGAGGGAATAGCATCATAATCCTAGAAAAGACCAGCGGTTTTTCTGCTGCTTTTCGTTTTCGACATTCACTTCCGATGTGATAAAAACGCTAAAACGCTACTTTGTGTCTTCTCGTGTTTGATCGGAAGTTTCAGGCAACACTTCGACATTCAATATTTCGAGAAAACATGTTTCAATGGAGRCGAACATAGGGGTCGGGCTACATAACAATCTTTGACTCTAGTCAACATCGTGTACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18651</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>325176</contig_pos>
        <strand></strand>
        <context>TAATAATCGC[C/A]CCGCTTTATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CAAATCGGATCGAGGGATTCTGATCATACCACAAAAAAAATAATAATCGC</left_flank>
        <right_flank>CCGCTTTATGAATGAAATGACGAATTTTTTTCTTGGCCGATTTTGAACAA</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCGTTCTTTTCCACCACCACGTGTATATTAAAAGTGATGTCATTGGCATATATTCTAGCACACTGTCTGTTTGCAATCATAAGACCTTGCAATATACGGGGAAGAATTTTTTCTGCTGTTGCTTCTCTAGGAGAGGGAATAGCATCATAATCCTAGAAAAGACCAGCGGTTTTTCTGCTGCTTTTCGTTTTCGACATTCACTTCCGATGTGATAAAAACGCTAAAACGCTACTTTGTGTCTTCTCGTGTTTGATCGGAAGTTTCAGGCAACACTTCGACATTCAATATTTCGAGAAAACATGTTTCAATGGAGACGAACATAGGGGTCGGGCTACATAACAATCTTTGACTCTAGTCAACATCGTGTACGAAACTTTACAAATCATAAAAAATAGGACCTAGTTTTGACCGTATACACACACCCACGCGCAGTTGTAAAATGTAGCGCAAATCGGATCGAGGGATTCTGATCATACCACAAAAAAAATAATAATCGCCCCGCTTTATGAATGAAATGACGAATTTTTTTCTTGGCCGATTTTGAACAAAACGATTTTTGTTCCAAATCTAAAACACAACGGTTATAAAAAACTTGAAAACAAGTTAGGAACAAGTTTGAAACATCAGTTGTATGAAAATATTGAATATGAGGGATCTCTCACCTGGAGGTACTCGAGTTTGGCTTGTCGGAACATTTCTAGCATAAGGTCAAACTGTTGAGTACGGTTCATGGTGACAGTAAAGGCACGACGCATGTAGAGCTGAAAATTAGTTGAAAATTTATTGAATGCCATAAAAAAATAATATTCAATTTTTTTTAATTAAAAAGTTTAAAAAACCTTAAGGTGGTTTAATCGTTCAATGTGCAATAAGAAATGCTCAAAACTTGAAAAAATCCAAACTAACTTTGAAAAAAATTACCAAAAAGCCGATAGGAACTTCAAAATGTTTTAATTGGAAATCTTGAAATTTTAAAAATTAAAAATCTATATTTCTAG</canonical>
            <polymorphic>AGCCGTTCTTTTCCACCACCACGTGTATATTAAAAGTGATGTCATTGGCATATATTCTAGCACACTGTCTGTTTGCAATCATAAGACCTTGCAATATACGGGGAAGAATTTTTTCTGCTGTTGCTTCTCTAGGAGAGGGAATAGCATCATAATCCTAGAAAAGACCAGCGGTTTTTCTGCTGCTTTTCGTTTTCGACATTCACTTCCGATGTGATAAAAACGCTAAAACGCTACTTTGTGTCTTCTCGTGTTTGATCGGAAGTTTCAGGCAACACTTCGACATTCAATATTTCGAGAAAACATGTTTCAATGGAGACGAACATAGGGGTCGGGCTACATAACAATCTTTGACTCTAGTCAACATCGTGTACGAAACTTTACAAATCATAAAAAATAGGACCTAGTTTTGACCGTATACACACACCCACGCGCAGTTGTAAAATGTAGCGCAAATCGGATCGAGGGATTCTGATCATACCACAAAAAAAATAATAATCGCMCCGCTTTATGAATGAAATGACGAATTTTTTTCTTGGCCGATTTTGAACAAAACGATTTTTGTTCCAAATCTAAAACACAACGGTTATAAAAAACTTGAAAACAAGTTAGGAACAAGTTTGAAACATCAGTTGTATGAAAATATTGAATATGAGGGATCTCTCACCTGGAGGTACTCGAGTTTGGCTTGTCGGAACATTTCTAGCATAAGGTCAAACTGTTGAGTACGGTTCATGGTGACAGTAAAGGCACGACGCATGTAGAGCTGAAAATTAGTTGAAAATTTATTGAATGCCATAAAAAAATAATATTCAATTTTTTTTAATTAAAAAGTTTAAAAAACCTTAAGGTGGTTTAATCGTTCAATGTGCAATAAGAAATGCTCAAAACTTGAAAAAATCCAAACTAACTTTGAAAAAAATTACCAAAAAGCCGATAGGAACTTCAAAATGTTTTAATTGGAAATCTTGAAATTTTAAAAATTAAAAATCTATATTTCTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGCTACATAACAATCTTTGAC</pcr_primer_p1>
		<pcr_primer_p2>TGTTTTAGATTTGGAACAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGGCTACATAACAATCTTTGACTCTAGTCAACATCGTGTACGAAACTTTACAAATCATAAAAAATAGGACCTAGTTTTGACCGTATACACACACCCACGCGCAGTTGTAAAATGTAGCGCAAATCGGATCGAGGGATTCTGATCATACCACAAAAAAAATAATAATCGCCCCGCTTTATGAATGAAATGACGAATTTTTTTCTTGGCCGATTTTGAACAAAACGATTTTTGTTCCAAATCTAAAACA</canonical_amplicon>
		<polymorphic_amplicon>GGGCTACATAACAATCTTTGACTCTAGTCAACATCGTGTACGAAACTTTACAAATCATAAAAAATAGGACCTAGTTTTGACCGTATACACACACCCACGCGCAGTTGTAAAATGTAGCGCAAATCGGATCGAGGGATTCTGATCATACCACAAAAAAAATAATAATCGCMCCGCTTTATGAATGAAATGACGAATTTTTTTCTTGGCCGATTTTGAACAAAACGATTTTTGTTCCAAATCTAAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18652</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>327017</contig_pos>
        <strand>+</strand>
        <context>AAAACGTATT[A/G]GCACCTTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATT</left_flank>
        <right_flank>GCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTT</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGCGAGCAAGGGAAAGAGCTTTTCAATCCCTTGTTTTGACCGAACGGCATCCGCTTACCAATGTAATTAGCAGAAAGGTTTAGCTTGATAAGACTGTTTTGAGAATCCGAACCAAATAATGGAGTAGACGTAAGATCTTGAAAATTGTTTCCATGGAATGTCACACTTTTGATGTATCTGAAAAGCCAAAATTCGTAGTATAATGAATTTAGGAAACTCACTTATAATTAGTGGAAATATCCAAAAAGACATTTGCGTCCACAAATTGAGCATTGATGCACGAGTAGTCGCCGGCGGATGGATCACATTGACAAGCGGCATAGTCGGCTAATTTACCAGCGCAAATTAGTTTGTTCTCAATAGCTTCCTGAAGAAGGGGTTTATTAGTAACATATACGACATATGTTGAAAATTTTGAAATTGAAATTGAATGCAAATGGTTGTTCCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGA</canonical>
            <polymorphic>TGGCGAGCAAGGGAAAGAGCTTTTCAATCCCTTGTTTTGACCGAACGGCATCCGCTTACCAATGTAATTAGCAGAAAGGTTTAGCTTGATAAGACTGTTTTGAGAATCCGAACCAAATAATGGAGTAGACGTAAGATCTTGAAAATTGTTTCCATGGAATGTCACACTTTTGATGTATCTGAAAAGCCAAAATTCGTAGTATAATGAATTTAGGAAACTCACTTATAATTAGTGGAAATATCCAAAAAGACATTTGCGTCCACAAATTGAGCATTGATGCACGAGTAGTCGCCGGCGGATGGATCACATTGACAAGCGGCATAGTCGGCTAATTTACCAGCGCAAATTAGTTTGTTCTCAATAGCTTCCTGAAGAAGGGGTTTATTAGTAACATATACGACATATGTTGAAAATTTTGAAATTGAAATTGAATGCAAATGGTTGTTCCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTRGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTGAATTATTTGAAAAAGAACA</pcr_primer_p1>
		<pcr_primer_p2>TGATGCAATTTCAGAACTCA</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>CCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGT</canonical_amplicon>
		<polymorphic_amplicon>CCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTRGCACCTTTCAAGCTACAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18653</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>326895</contig_pos>
        <strand>+</strand>
        <context>CCTGAAGAAG[A/G]GGTTTATTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTAATTTACCAGCGCAAATTAGTTTGTTCTCAATAGCTTCCTGAAGAAG</left_flank>
        <right_flank>GGTTTATTAGTAACATATACGACATATGTTGAAAATTTTGAAATTGAAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCTCTTCCTACAACTAGATTCCTACTTAATAGACTACACTGGTCCGTTGCAAGTAAACAACCATAATGAGGGGCGACTCAATCTCTCTTAGGTTTTAGCAGGAGGAAATAATTGATGGGGTGGCGAGCAAGGGAAAGAGCTTTTCAATCCCTTGTTTTGACCGAACGGCATCCGCTTACCAATGTAATTAGCAGAAAGGTTTAGCTTGATAAGACTGTTTTGAGAATCCGAACCAAATAATGGAGTAGACGTAAGATCTTGAAAATTGTTTCCATGGAATGTCACACTTTTGATGTATCTGAAAAGCCAAAATTCGTAGTATAATGAATTTAGGAAACTCACTTATAATTAGTGGAAATATCCAAAAAGACATTTGCGTCCACAAATTGAGCATTGATGCACGAGTAGTCGCCGGCGGATGGATCACATTGACAAGCGGCATAGTCGGCTAATTTACCAGCGCAAATTAGTTTGTTCTCAATAGCTTCCTGAAGAAGGGGTTTATTAGTAACATATACGACATATGTTGAAAATTTTGAAATTGAAATTGAATGCAAATGGTTGTTCCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGA</canonical>
            <polymorphic>TTCCTCTTCCTACAACTAGATTCCTACTTAATAGACTACACTGGTCCGTTGCAAGTAAACAACCATAATGAGGGGCGACTCAATCTCTCTTAGGTTTTAGCAGGAGGAAATAATTGATGGGGTGGCGAGCAAGGGAAAGAGCTTTTCAATCCCTTGTTTTGACCGAACGGCATCCGCTTACCAATGTAATTAGCAGAAAGGTTTAGCTTGATAAGACTGTTTTGAGAATCCGAACCAAATAATGGAGTAGACGTAAGATCTTGAAAATTGTTTCCATGGAATGTCACACTTTTGATGTATCTGAAAAGCCAAAATTCGTAGTATAATGAATTTAGGAAACTCACTTATAATTAGTGGAAATATCCAAAAAGACATTTGCGTCCACAAATTGAGCATTGATGCACGAGTAGTCGCCGGCGGATGGATCACATTGACAAGCGGCATAGTCGGCTAATTTACCAGCGCAAATTAGTTTGTTCTCAATAGCTTCCTGAAGAAGRGGTTTATTAGTAACATATACGACATATGTTGAAAATTTTGAAATTGAAATTGAATGCAAATGGTTGTTCCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>297 207 179 172 76 69</canonical_bands>
                <polymorphic_bands>297 283 179 172 69</polymorphic_bands>
            </assay>
            <assay>
                <site>CCTNNNNNAGG</site>
                <isoschizomers>
                    <enzyme>BstENI</enzyme>
                    <enzyme>EcoNI</enzyme>
                    <enzyme>XagI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGTGGAAATATCCAAAAAGACA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTTCAAATAATTCAGGAACA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TAGTGGAAATATCCAAAAAGACATTTGCGTCCACAAATTGAGCATTGATGCACGAGTAGTCGCCGGCGGATGGATCACATTGACAAGCGGCATAGTCGGCTAATTTACCAGCGCAAATTAGTTTGTTCTCAATAGCTTCCTGAAGAAGGGGTTTATTAGTAACATATACGACATATGTTGAAAATTTTGAAATTGAAATTGAATGCAAATGGTTGTTCCTGAATTATTTGAAAAAG</canonical_amplicon>
		<polymorphic_amplicon>TAGTGGAAATATCCAAAAAGACATTTGCGTCCACAAATTGAGCATTGATGCACGAGTAGTCGCCGGCGGATGGATCACATTGACAAGCGGCATAGTCGGCTAATTTACCAGCGCAAATTAGTTTGTTCTCAATAGCTTCCTGAAGAAGRGGTTTATTAGTAACATATACGACATATGTTGAAAATTTTGAAATTGAAATTGAATGCAAATGGTTGTTCCTGAATTATTTGAAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18654</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>352996</contig_pos>
        <strand>+</strand>
        <context>CATCCGGACC[A/G]TCTTCAGCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGCGACACTCCACCATCACTTCCAGTCACCGACTACCGTCCATCCGGACC</left_flank>
        <right_flank>TCTTCAGCTCCACGCCCAGCTCCAGCTCCACCAGGCGGACGTCAAGCTCC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTGTAAATGCAAAGTTTTCAACCTGGGTCTGTTTTCCAAATTTCCAAAAATTTCATTTTCCAAAAACGTTCATTTTCCAAAAATTTCAAACGGTTCTTAAACTTTACAGTCTAGCCCCAGACTCCTGAAAATGGTCAAAATCAACGGACCGGTACTGTATTTGCTTTTTAGGAGTCTCTGCAAACAGTGATTCTCCAAATTTTATAGCTTACACAAATCACAACTATGACTCAAATCATTCCATCACTTCAACTTAGAATGAAAGTCTTCCAGGTCAGCGAATTCATGAAAGACGAACTTCTGGCTCACCTTTACCAATGCGGCGACACTGATGCTCTCATGGAGGAATCACAACTGGAAGCTCAGAAACGCGAAGAAATGCTTCGCATGTACCACGCCTGCAAGGAAGCCCTCCGTATCATCTCCGAAGTCAACATGAGCACTCTCGGCGACACTCCACCATCACTTCCAGTCACCGACTACCGTCCATCCGGACCATCTTCAGCTCCACGCCCAGCTCCAGCTCCACCAGGCGGACGTCAAGCTCCAATGCCACCAGGACCACGTGGACCGGGAGGACCACCACCACCTGGAATGCGCCCACCACCAGGTGCTCCAGGAGGTGGAGGCATGTATCCACCATTGATTCCAACGTAAGTTGTTGTAATTAGGGATCTTTCAGTTACTATAACATATCTTCTATTCTATCATGGTCTTTTTTCTCTCTTCTTCTATTTAAAATCACCTAGAATCAAAATTAAAATCATTAAAATCTAACACGTTTCAACCACTCTAGGCGTCCGGGACCAGGCGGCCCACCACCACCAAACATGGCACCGCCTAGATAATAATGTTGTGAATAATATTTCAACCCACAGAAGGTTTGTTGAAACAGACAGTACATATCTATAGTCTGTACACCTATGCATGTTGATATTGTGGGGTTTTTATATGGCGTAATGTGGTTCTGTACACTTTTCATATCTATTAGCTTCACA</canonical>
            <polymorphic>ATCTGTAAATGCAAAGTTTTCAACCTGGGTCTGTTTTCCAAATTTCCAAAAATTTCATTTTCCAAAAACGTTCATTTTCCAAAAATTTCAAACGGTTCTTAAACTTTACAGTCTAGCCCCAGACTCCTGAAAATGGTCAAAATCAACGGACCGGTACTGTATTTGCTTTTTAGGAGTCTCTGCAAACAGTGATTCTCCAAATTTTATAGCTTACACAAATCACAACTATGACTCAAATCATTCCATCACTTCAACTTAGAATGAAAGTCTTCCAGGTCAGCGAATTCATGAAAGACGAACTTCTGGCTCACCTTTACCAATGCGGCGACACTGATGCTCTCATGGAGGAATCACAACTGGAAGCTCAGAAACGCGAAGAAATGCTTCGCATGTACCACGCCTGCAAGGAAGCCCTCCGTATCATCTCCGAAGTCAACATGAGCACTCTCGGCGACACTCCACCATCACTTCCAGTCACCGACTACCGTCCATCCGGACCRTCTTCAGCTCCACGCCCAGCTCCAGCTCCACCAGGCGGACGTCAAGCTCCAATGCCACCAGGACCACGTGGACCGGGAGGACCACCACCACCTGGAATGCGCCCACCACCAGGTGCTCCAGGAGGTGGAGGCATGTATCCACCATTGATTCCAACGTAAGTTGTTGTAATTAGGGATCTTTCAGTTACTATAACATATCTTCTATTCTATCATGGTCTTTTTTCTCTCTTCTTCTATTTAAAATCACCTAGAATCAAAATTAAAATCATTAAAATCTAACACGTTTCAACCACTCTAGGCGTCCGGGACCAGGCGGCCCACCACCACCAAACATGGCACCGCCTAGATAATAATGTTGTGAATAATATTTCAACCCACAGAAGGTTTGTTGAAACAGACAGTACATATCTATAGTCTGTACACCTATGCATGTTGATATTGTGGGGTTTTTATATGGCGTAATGTGGTTCTGTACACTTTTCATATCTATTAGCTTCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATCATCTCCGAAGTCAACAT</pcr_primer_p1>
		<pcr_primer_p2>AACAACTTACGTTGGAATCAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTATCATCTCCGAAGTCAACATGAGCACTCTCGGCGACACTCCACCATCACTTCCAGTCACCGACTACCGTCCATCCGGACCATCTTCAGCTCCACGCCCAGCTCCAGCTCCACCAGGCGGACGTCAAGCTCCAATGCCACCAGGACCACGTGGACCGGGAGGACCACCACCACCTGGAATGCGCCCACCACCAGGTGCTCCAGGAGGTGGAGGCATGTATCCACCATTGATTCCAACGTAAGTTGTT</canonical_amplicon>
		<polymorphic_amplicon>GTATCATCTCCGAAGTCAACATGAGCACTCTCGGCGACACTCCACCATCACTTCCAGTCACCGACTACCGTCCATCCGGACCRTCTTCAGCTCCACGCCCAGCTCCAGCTCCACCAGGCGGACGTCAAGCTCCAATGCCACCAGGACCACGTGGACCGGGAGGACCACCACCACCTGGAATGCGCCCACCACCAGGTGCTCCAGGAGGTGGAGGCATGTATCCACCATTGATTCCAACGTAAGTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18655</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>356908</contig_pos>
        <strand>+</strand>
        <context>CAATGTCACT[C/T]TTGTCATTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCTGGTCTGGAGTTCAATTTTGTTCTACGTGTACTCGATCAATGTCACT</left_flank>
        <right_flank>TTGTCATTAATGAGCGTTTAGTGTCATCAGCGCAAGAAATCATAAATCGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAACTTTCGGATCTTGATTGATCCCCTTTTTTTCGGGGAAAGAAAAATATTGAGGTGTCCCACCCGCTTTTTTCTCTCATCATTAAAGTGACTCTTGGACTCAACACTCTCAACTTATCGATTCGATGATTGAAAAAGTAGAGAAAATTTTCATTTACTCATCTTTTGCTCCCTCCTTTCTCCATTGCTATTCTTCTTCTTCCTCCTTCGTCGCCATCCAGCAGTGCCATTTCTCTTCGGCAGGAGGAATGGTGTGTAAAGTGATGACGGCGGCGGTTTCTTCAGGAAGCGCAGGAGTAGCACAGCTCAACCTCGGCAGTAGTTGGAGCAGAGGAGCCCAGCATATTTTCGATACTCATCGAGCACTTGCCGTTTTGTTGTCATCCATCCAACAAATCAGCAAACAACATTTTTCCAATGATTTTTTTTGTTTCTTCTGCCCTGTTGCTGCTGGTCTGGAGTTCAATTTTGTTCTACGTGTACTCGATCAATGTCACTTTTGTCATTAATGAGCGTTTAGTGTCATCAGCGCAAGAAATCATAAATCGAGAGTCCACAAAAATTGGGGACCATTTGAGAACTTCTACTGAAAAGTGCAAGAAATTAATTTTACAATTTATGTTTTCCTGTTGCCTGCAATTGCAATTGTCCCAACTGAAATTTTAGCTAGAATGTCTCATAATTTTTCATATGACCATATGTATTTCTGATTTTAAAATTCCCTATTTTTTGTATTCCACACTGCCTGATCTATTCAATTTAACAGTTTCTTGCCCAACTCGATCAGCTGCATTCCTAAACGTACCGTTTCATTCATTCTATAAAACACTTCTGATACAAAAATTTCCCAAAAGTTTCAGATCGATCGACACCTTAGAGTACCTACGAAGCTGTTCGAAACCGGAAAAAAATACCCCTCAATTTTTTTGGAAAGACAGCTCAACGTGAAGAGAACTCTTCGAGGATAGAACGAGAAAAACTGCGAGACGACACAAGAAA</canonical>
            <polymorphic>CAAACTTTCGGATCTTGATTGATCCCCTTTTTTTCGGGGAAAGAAAAATATTGAGGTGTCCCACCCGCTTTTTTCTCTCATCATTAAAGTGACTCTTGGACTCAACACTCTCAACTTATCGATTCGATGATTGAAAAAGTAGAGAAAATTTTCATTTACTCATCTTTTGCTCCCTCCTTTCTCCATTGCTATTCTTCTTCTTCCTCCTTCGTCGCCATCCAGCAGTGCCATTTCTCTTCGGCAGGAGGAATGGTGTGTAAAGTGATGACGGCGGCGGTTTCTTCAGGAAGCGCAGGAGTAGCACAGCTCAACCTCGGCAGTAGTTGGAGCAGAGGAGCCCAGCATATTTTCGATACTCATCGAGCACTTGCCGTTTTGTTGTCATCCATCCAACAAATCAGCAAACAACATTTTTCCAATGATTTTTTTTGTTTCTTCTGCCCTGTTGCTGCTGGTCTGGAGTTCAATTTTGTTCTACGTGTACTCGATCAATGTCACTYTTGTCATTAATGAGCGTTTAGTGTCATCAGCGCAAGAAATCATAAATCGAGAGTCCACAAAAATTGGGGACCATTTGAGAACTTCTACTGAAAAGTGCAAGAAATTAATTTTACAATTTATGTTTTCCTGTTGCCTGCAATTGCAATTGTCCCAACTGAAATTTTAGCTAGAATGTCTCATAATTTTTCATATGACCATATGTATTTCTGATTTTAAAATTCCCTATTTTTTGTATTCCACACTGCCTGATCTATTCAATTTAACAGTTTCTTGCCCAACTCGATCAGCTGCATTCCTAAACGTACCGTTTCATTCATTCTATAAAACACTTCTGATACAAAAATTTCCCAAAAGTTTCAGATCGATCGACACCTTAGAGTACCTACGAAGCTGTTCGAAACCGGAAAAAAATACCCCTCAATTTTTTTGGAAAGACAGCTCAACGTGAAGAGAACTCTTCGAGGATAGAACGAGAAAAACTGCGAGACGACACAAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGCATATTTTCGATACTCA</pcr_primer_p1>
		<pcr_primer_p2>TCAGTAGAAGTTCTCAAATGGTC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CCAGCATATTTTCGATACTCATCGAGCACTTGCCGTTTTGTTGTCATCCATCCAACAAATCAGCAAACAACATTTTTCCAATGATTTTTTTTGTTTCTTCTGCCCTGTTGCTGCTGGTCTGGAGTTCAATTTTGTTCTACGTGTACTCGATCAATGTCACTTTTGTCATTAATGAGCGTTTAGTGTCATCAGCGCAAGAAATCATAAATCGAGAGTCCACAAAAATTGGGGACCATTTGAGAACTTCTACTGA</canonical_amplicon>
		<polymorphic_amplicon>CCAGCATATTTTCGATACTCATCGAGCACTTGCCGTTTTGTTGTCATCCATCCAACAAATCAGCAAACAACATTTTTCCAATGATTTTTTTTGTTTCTTCTGCCCTGTTGCTGCTGGTCTGGAGTTCAATTTTGTTCTACGTGTACTCGATCAATGTCACTYTTGTCATTAATGAGCGTTTAGTGTCATCAGCGCAAGAAATCATAAATCGAGAGTCCACAAAAATTGGGGACCATTTGAGAACTTCTACTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18656</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>398476</contig_pos>
        <strand>+</strand>
        <context>GAGCAATGAA[C/T]TGAAAGATCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACATTCACTCTCTGAAGGATTAATCCACATTTTGGATAGTGAGCAATGAA</left_flank>
        <right_flank>TGAAAGATCTCTCCTTTCTCCTGGAGACCACGCGAGAAGGCGAGAGAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCATAAATTTTCTAACAACTATCAGAAATACACAAAAACCATATGTTCGTGTGGTTTTTTTCCTCTACATGTGTGTATTTTCTCCTCAACCATTTTTAAGAATGAGAAATAACAGATATTAAAGCAAGAAAATACCAGAAAAAGATACTGTAAACCTACCATTCCTTGATTTCAGGCAAGAGCGGCTGCGAAACGACTAAGCTTGCAAAACGTCGCGCTACGAAACGATCTGGAGTCGAAATCGCGCTTCGGAACGTTAGAACTATTGCTGGGATAGTGGGTCCGTTGTCGAAAGATCGAGACTGTTGTCACATTTTATAGAACCGGCAGTCGGATGATGGGACCAGCGGACCTGCCTTGTGACCATTCTTCCTGGAAAAAGCCAAAAAACTTACGAGTGCAAGTCACAAGCTGATCGATGACACCGTCATAGCGATACGGACGGTCGACATTCACTCTCTGAAGGATTAATCCACATTTTGGATAGTGAGCAATGAACTGAAAGATCTCTCCTTTCTCCTGGAGACCACGCGAGAAGGCGAGAGAAGAGTAGTTGCGAAACTCTTCGCGGAGGATCGAGATAATGCGAGCCCATCCAGGTTGGTCGCCCTGAAAAACTTTTATTATGATGAGGTGTTCTTGATATGGCTAGAATCTGTATTTTTAATCACTGCACAGTCGCTCAAATCAGATATACTCACTTCGCCGTCGGACAGGTTTTGAGATTTTTTTTTAAATTCCAGTTTTCATATATCCCGAAGAACAGGTTTTTTGAGTGACATCGAGGAACGAAAAAAAAGTTGCTCGCTGACGTCTGACGACCATCAAGTTCAGAAATGACGAGGTTTTTTAATCATCAAGCTTGGAAATTTGAGCGATGCTTGATATTTGCCGGCTTGTTTGAGAAAATTTTGCCAGGCTGATAGATTTTGGTCTATACCAGGCTTGCTCGGAAAGCCCTGTTCCGAAAAACGGATATCCAATTTTTTCCGACTCTTC</canonical>
            <polymorphic>GGCATAAATTTTCTAACAACTATCAGAAATACACAAAAACCATATGTTCGTGTGGTTTTTTTCCTCTACATGTGTGTATTTTCTCCTCAACCATTTTTAAGAATGAGAAATAACAGATATTAAAGCAAGAAAATACCAGAAAAAGATACTGTAAACCTACCATTCCTTGATTTCAGGCAAGAGCGGCTGCGAAACGACTAAGCTTGCAAAACGTCGCGCTACGAAACGATCTGGAGTCGAAATCGCGCTTCGGAACGTTAGAACTATTGCTGGGATAGTGGGTCCGTTGTCGAAAGATCGAGACTGTTGTCACATTTTATAGAACCGGCAGTCGGATGATGGGACCAGCGGACCTGCCTTGTGACCATTCTTCCTGGAAAAAGCCAAAAAACTTACGAGTGCAAGTCACAAGCTGATCGATGACACCGTCATAGCGATACGGACGGTCGACATTCACTCTCTGAAGGATTAATCCACATTTTGGATAGTGAGCAATGAAYTGAAAGATCTCTCCTTTCTCCTGGAGACCACGCGAGAAGGCGAGAGAAGAGTAGTTGCGAAACTCTTCGCGGAGGATCGAGATAATGCGAGCCCATCCAGGTTGGTCGCCCTGAAAAACTTTTATTATGATGAGGTGTTCTTGATATGGCTAGAATCTGTATTTTTAATCACTGCACAGTCGCTCAAATCAGATATACTCACTTCGCCGTCGGACAGGTTTTGAGATTTTTTTTTAAATTCCAGTTTTCATATATCCCGAAGAACAGGTTTTTTGAGTGACATCGAGGAACGAAAAAAAAGTTGCTCGCTGACGTCTGACGACCATCAAGTTCAGAAATGACGAGGTTTTTTAATCATCAAGCTTGGAAATTTGAGCGATGCTTGATATTTGCCGGCTTGTTTGAGAAAATTTTGCCAGGCTGATAGATTTTGGTCTATACCAGGCTTGCTCGGAAAGCCCTGTTCCGAAAAACGGATATCCAATTTTTTCCGACTCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCGACATTCACTCTCTGAAG</pcr_primer_p1>
		<pcr_primer_p2>GTATATCTGATTTGAGCGACTGT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GTCGACATTCACTCTCTGAAGGATTAATCCACATTTTGGATAGTGAGCAATGAACTGAAAGATCTCTCCTTTCTCCTGGAGACCACGCGAGAAGGCGAGAGAAGAGTAGTTGCGAAACTCTTCGCGGAGGATCGAGATAATGCGAGCCCATCCAGGTTGGTCGCCCTGAAAAACTTTTATTATGATGAGGTGTTCTTGATATGGCTAGAATCTGTATTTTTAATCACTGCACAGTCGCTCAAATCAGATATAC</canonical_amplicon>
		<polymorphic_amplicon>GTCGACATTCACTCTCTGAAGGATTAATCCACATTTTGGATAGTGAGCAATGAAYTGAAAGATCTCTCCTTTCTCCTGGAGACCACGCGAGAAGGCGAGAGAAGAGTAGTTGCGAAACTCTTCGCGGAGGATCGAGATAATGCGAGCCCATCCAGGTTGGTCGCCCTGAAAAACTTTTATTATGATGAGGTGTTCTTGATATGGCTAGAATCTGTATTTTTAATCACTGCACAGTCGCTCAAATCAGATATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18657</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>400402</contig_pos>
        <strand>+</strand>
        <context>ATTTGGCTAC[A/T]AGATTTATGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGCTTGTCCTGAAAAATGAATTTGAAAAACTATAAATTTATTTGGCTAC</left_flank>
        <right_flank>AGATTTATGTGGCTTCTGACTTCATACAGTACCGGACAATAACCTGGGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACGTTCAATAGGATTCGTAAAGCGGAAACGAGTTTATAGTTTGAAAAAAAAACCACAAAAAAAAGAATAAGAACCTGAAAAATAAATTAAATGCATCAAAAATCAGAACAAAGTTACAACCAATAATCAAAATAAATACTAAACAGAATAATCTAAAGACCAGTAGCAACCCGAATGCAGATATAAATTAAGTGTAGTTATGTAAGTTTTCCCCCAGCGATACGGCTTTTCATGTAGCGTGATGTGTGATAAATCGTGATGTCTACAAGTTGAGCCATTGCGAAAACACCTCCGACGATGGCGCAGAGCGATACCAAAAATGAGGCAAGCGACCTGAAATTAGAATATCTCTTTGGTAGAAGGGACGGGTGAAGTCTTACTGCCTGAATTCTTCGTATTGAACCATTAGTGGACTGAATTCGTATTGGAGGAAGAAACCAGGAAGACCAGCTTGTCCTGAAAAATGAATTTGAAAAACTATAAATTTATTTGGCTACAAGATTTATGTGGCTTCTGACTTCATACAGTACCGGACAATAACCTGGGAATTTCAAAGAAATTCTGGGATAGCGCGATTTTCAGTTTAGGTCTATTTCACACTCTCCAAAATTTTCAAACTGATTGGACACTTGACAGCCAAAGTACAGACTCTTGAAAAAGGTCTAAACCATCTGAAAAGCACGTTTGACTGGTGCTCGATGTAAAAAACTCACTGAATCCAAGATCCTTCTTATGAGTGGTCACCGAGAACTGATGACTCTGGTCCACACGTCCATCCAAATAGTCGTAACGAGTTGGCACCACTTTCACGTAGTACTGGTACATGATTCCTCCTCTATTCTCAGTGTTCACTTTTCCATCAAGTGGATAGTTCTTTCCCGGGAAAGATTTTCCAAACGAGATGTGATTTACAGTGTGAGACGCGTCGAATTTCACTGGATCCAAGTTGTGAAGGTCGTGAACTGCAAAGGAACAAGATGAACAGAGAGTTTTTTGAG</canonical>
            <polymorphic>TGACGTTCAATAGGATTCGTAAAGCGGAAACGAGTTTATAGTTTGAAAAAAAAACCACAAAAAAAAGAATAAGAACCTGAAAAATAAATTAAATGCATCAAAAATCAGAACAAAGTTACAACCAATAATCAAAATAAATACTAAACAGAATAATCTAAAGACCAGTAGCAACCCGAATGCAGATATAAATTAAGTGTAGTTATGTAAGTTTTCCCCCAGCGATACGGCTTTTCATGTAGCGTGATGTGTGATAAATCGTGATGTCTACAAGTTGAGCCATTGCGAAAACACCTCCGACGATGGCGCAGAGCGATACCAAAAATGAGGCAAGCGACCTGAAATTAGAATATCTCTTTGGTAGAAGGGACGGGTGAAGTCTTACTGCCTGAATTCTTCGTATTGAACCATTAGTGGACTGAATTCGTATTGGAGGAAGAAACCAGGAAGACCAGCTTGTCCTGAAAAATGAATTTGAAAAACTATAAATTTATTTGGCTACWAGATTTATGTGGCTTCTGACTTCATACAGTACCGGACAATAACCTGGGAATTTCAAAGAAATTCTGGGATAGCGCGATTTTCAGTTTAGGTCTATTTCACACTCTCCAAAATTTTCAAACTGATTGGACACTTGACAGCCAAAGTACAGACTCTTGAAAAAGGTCTAAACCATCTGAAAAGCACGTTTGACTGGTGCTCGATGTAAAAAACTCACTGAATCCAAGATCCTTCTTATGAGTGGTCACCGAGAACTGATGACTCTGGTCCACACGTCCATCCAAATAGTCGTAACGAGTTGGCACCACTTTCACGTAGTACTGGTACATGATTCCTCCTCTATTCTCAGTGTTCACTTTTCCATCAAGTGGATAGTTCTTTCCCGGGAAAGATTTTCCAAACGAGATGTGATTTACAGTGTGAGACGCGTCGAATTTCACTGGATCCAAGTTGTGAAGGTCGTGAACTGCAAAGGAACAAGATGAACAGAGAGTTTTTTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGAAGAAACCAGGAAGAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTACATCGAGCACCAGTC</pcr_primer_p2>
		<pcr_amplicon_size>279</pcr_amplicon_size>
		<canonical_amplicon>GAGGAAGAAACCAGGAAGACCAGCTTGTCCTGAAAAATGAATTTGAAAAACTATAAATTTATTTGGCTACAAGATTTATGTGGCTTCTGACTTCATACAGTACCGGACAATAACCTGGGAATTTCAAAGAAATTCTGGGATAGCGCGATTTTCAGTTTAGGTCTATTTCACACTCTCCAAAATTTTCAAACTGATTGGACACTTGACAGCCAAAGTACAGACTCTTGAAAAAGGTCTAAACCATCTGAAAAGCACGTTTGACTGGTGCTCGATGTAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAGGAAGAAACCAGGAAGACCAGCTTGTCCTGAAAAATGAATTTGAAAAACTATAAATTTATTTGGCTACWAGATTTATGTGGCTTCTGACTTCATACAGTACCGGACAATAACCTGGGAATTTCAAAGAAATTCTGGGATAGCGCGATTTTCAGTTTAGGTCTATTTCACACTCTCCAAAATTTTCAAACTGATTGGACACTTGACAGCCAAAGTACAGACTCTTGAAAAAGGTCTAAACCATCTGAAAAGCACGTTTGACTGGTGCTCGATGTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18658</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>400363</contig_pos>
        <strand>+</strand>
        <context>AGCTTGTCCT[A/G]AAAAATGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGGACTGAATTCGTATTGGAGGAAGAAACCAGGAAGACCAGCTTGTCCT</left_flank>
        <right_flank>AAAAATGAATTTGAAAAACTATAAATTTATTTGGCTACAAGATTTATGTG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAAACAGAGAAAAAAGTGTTCGGAGAAGAGGAACCCGTGACGTTCAATAGGATTCGTAAAGCGGAAACGAGTTTATAGTTTGAAAAAAAAACCACAAAAAAAAGAATAAGAACCTGAAAAATAAATTAAATGCATCAAAAATCAGAACAAAGTTACAACCAATAATCAAAATAAATACTAAACAGAATAATCTAAAGACCAGTAGCAACCCGAATGCAGATATAAATTAAGTGTAGTTATGTAAGTTTTCCCCCAGCGATACGGCTTTTCATGTAGCGTGATGTGTGATAAATCGTGATGTCTACAAGTTGAGCCATTGCGAAAACACCTCCGACGATGGCGCAGAGCGATACCAAAAATGAGGCAAGCGACCTGAAATTAGAATATCTCTTTGGTAGAAGGGACGGGTGAAGTCTTACTGCCTGAATTCTTCGTATTGAACCATTAGTGGACTGAATTCGTATTGGAGGAAGAAACCAGGAAGACCAGCTTGTCCTGAAAAATGAATTTGAAAAACTATAAATTTATTTGGCTACAAGATTTATGTGGCTTCTGACTTCATACAGTACCGGACAATAACCTGGGAATTTCAAAGAAATTCTGGGATAGCGCGATTTTCAGTTTAGGTCTATTTCACACTCTCCAAAATTTTCAAACTGATTGGACACTTGACAGCCAAAGTACAGACTCTTGAAAAAGGTCTAAACCATCTGAAAAGCACGTTTGACTGGTGCTCGATGTAAAAAACTCACTGAATCCAAGATCCTTCTTATGAGTGGTCACCGAGAACTGATGACTCTGGTCCACACGTCCATCCAAATAGTCGTAACGAGTTGGCACCACTTTCACGTAGTACTGGTACATGATTCCTCCTCTATTCTCAGTGTTCACTTTTCCATCAAGTGGATAGTTCTTTCCCGGGAAAGATTTTCCAAACGAGATGTGATTTACAGTGTGAGACGCGTCGAATTTCACTGGATCCAAGTTGTGAAGGTCGT</canonical>
            <polymorphic>TAAAAACAGAGAAAAAAGTGTTCGGAGAAGAGGAACCCGTGACGTTCAATAGGATTCGTAAAGCGGAAACGAGTTTATAGTTTGAAAAAAAAACCACAAAAAAAAGAATAAGAACCTGAAAAATAAATTAAATGCATCAAAAATCAGAACAAAGTTACAACCAATAATCAAAATAAATACTAAACAGAATAATCTAAAGACCAGTAGCAACCCGAATGCAGATATAAATTAAGTGTAGTTATGTAAGTTTTCCCCCAGCGATACGGCTTTTCATGTAGCGTGATGTGTGATAAATCGTGATGTCTACAAGTTGAGCCATTGCGAAAACACCTCCGACGATGGCGCAGAGCGATACCAAAAATGAGGCAAGCGACCTGAAATTAGAATATCTCTTTGGTAGAAGGGACGGGTGAAGTCTTACTGCCTGAATTCTTCGTATTGAACCATTAGTGGACTGAATTCGTATTGGAGGAAGAAACCAGGAAGACCAGCTTGTCCTRAAAAATGAATTTGAAAAACTATAAATTTATTTGGCTACAAGATTTATGTGGCTTCTGACTTCATACAGTACCGGACAATAACCTGGGAATTTCAAAGAAATTCTGGGATAGCGCGATTTTCAGTTTAGGTCTATTTCACACTCTCCAAAATTTTCAAACTGATTGGACACTTGACAGCCAAAGTACAGACTCTTGAAAAAGGTCTAAACCATCTGAAAAGCACGTTTGACTGGTGCTCGATGTAAAAAACTCACTGAATCCAAGATCCTTCTTATGAGTGGTCACCGAGAACTGATGACTCTGGTCCACACGTCCATCCAAATAGTCGTAACGAGTTGGCACCACTTTCACGTAGTACTGGTACATGATTCCTCCTCTATTCTCAGTGTTCACTTTTCCATCAAGTGGATAGTTCTTTCCCGGGAAAGATTTTCCAAACGAGATGTGATTTACAGTGTGAGACGCGTCGAATTTCACTGGATCCAAGTTGTGAAGGTCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>308 296 201 195</canonical_bands>
                <polymorphic_bands>396 308 296</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGCGATACCAAAAATGAG</pcr_primer_p1>
		<pcr_primer_p2>TGTCCGGTACTGTATGAAGTC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>AGAGCGATACCAAAAATGAGGCAAGCGACCTGAAATTAGAATATCTCTTTGGTAGAAGGGACGGGTGAAGTCTTACTGCCTGAATTCTTCGTATTGAACCATTAGTGGACTGAATTCGTATTGGAGGAAGAAACCAGGAAGACCAGCTTGTCCTGAAAAATGAATTTGAAAAACTATAAATTTATTTGGCTACAAGATTTATGTGGCTTCTGACTTCATACAGTACCGGACA</canonical_amplicon>
		<polymorphic_amplicon>AGAGCGATACCAAAAATGAGGCAAGCGACCTGAAATTAGAATATCTCTTTGGTAGAAGGGACGGGTGAAGTCTTACTGCCTGAATTCTTCGTATTGAACCATTAGTGGACTGAATTCGTATTGGAGGAAGAAACCAGGAAGACCAGCTTGTCCTRAAAAATGAATTTGAAAAACTATAAATTTATTTGGCTACAAGATTTATGTGGCTTCTGACTTCATACAGTACCGGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18659</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>400305</contig_pos>
        <strand>+</strand>
        <context>CTTCGTATTG[A/C]ACCATTAGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTTGGTAGAAGGGACGGGTGAAGTCTTACTGCCTGAATTCTTCGTATTG</left_flank>
        <right_flank>ACCATTAGTGGACTGAATTCGTATTGGAGGAAGAAACCAGGAAGACCAGC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGGAATAACCCAAGACGAGTGGGACAGAACGGCACAAGACGATACGCGATAATACTTAAAAACAGAGAAAAAAGTGTTCGGAGAAGAGGAACCCGTGACGTTCAATAGGATTCGTAAAGCGGAAACGAGTTTATAGTTTGAAAAAAAAACCACAAAAAAAAGAATAAGAACCTGAAAAATAAATTAAATGCATCAAAAATCAGAACAAAGTTACAACCAATAATCAAAATAAATACTAAACAGAATAATCTAAAGACCAGTAGCAACCCGAATGCAGATATAAATTAAGTGTAGTTATGTAAGTTTTCCCCCAGCGATACGGCTTTTCATGTAGCGTGATGTGTGATAAATCGTGATGTCTACAAGTTGAGCCATTGCGAAAACACCTCCGACGATGGCGCAGAGCGATACCAAAAATGAGGCAAGCGACCTGAAATTAGAATATCTCTTTGGTAGAAGGGACGGGTGAAGTCTTACTGCCTGAATTCTTCGTATTGAACCATTAGTGGACTGAATTCGTATTGGAGGAAGAAACCAGGAAGACCAGCTTGTCCTGAAAAATGAATTTGAAAAACTATAAATTTATTTGGCTACAAGATTTATGTGGCTTCTGACTTCATACAGTACCGGACAATAACCTGGGAATTTCAAAGAAATTCTGGGATAGCGCGATTTTCAGTTTAGGTCTATTTCACACTCTCCAAAATTTTCAAACTGATTGGACACTTGACAGCCAAAGTACAGACTCTTGAAAAAGGTCTAAACCATCTGAAAAGCACGTTTGACTGGTGCTCGATGTAAAAAACTCACTGAATCCAAGATCCTTCTTATGAGTGGTCACCGAGAACTGATGACTCTGGTCCACACGTCCATCCAAATAGTCGTAACGAGTTGGCACCACTTTCACGTAGTACTGGTACATGATTCCTCCTCTATTCTCAGTGTTCACTTTTCCATCAAGTGGATAGTTCTTTCCCGGGAAAGATTTTCCAAACGAG</canonical>
            <polymorphic>GAAGGAATAACCCAAGACGAGTGGGACAGAACGGCACAAGACGATACGCGATAATACTTAAAAACAGAGAAAAAAGTGTTCGGAGAAGAGGAACCCGTGACGTTCAATAGGATTCGTAAAGCGGAAACGAGTTTATAGTTTGAAAAAAAAACCACAAAAAAAAGAATAAGAACCTGAAAAATAAATTAAATGCATCAAAAATCAGAACAAAGTTACAACCAATAATCAAAATAAATACTAAACAGAATAATCTAAAGACCAGTAGCAACCCGAATGCAGATATAAATTAAGTGTAGTTATGTAAGTTTTCCCCCAGCGATACGGCTTTTCATGTAGCGTGATGTGTGATAAATCGTGATGTCTACAAGTTGAGCCATTGCGAAAACACCTCCGACGATGGCGCAGAGCGATACCAAAAATGAGGCAAGCGACCTGAAATTAGAATATCTCTTTGGTAGAAGGGACGGGTGAAGTCTTACTGCCTGAATTCTTCGTATTGMACCATTAGTGGACTGAATTCGTATTGGAGGAAGAAACCAGGAAGACCAGCTTGTCCTGAAAAATGAATTTGAAAAACTATAAATTTATTTGGCTACAAGATTTATGTGGCTTCTGACTTCATACAGTACCGGACAATAACCTGGGAATTTCAAAGAAATTCTGGGATAGCGCGATTTTCAGTTTAGGTCTATTTCACACTCTCCAAAATTTTCAAACTGATTGGACACTTGACAGCCAAAGTACAGACTCTTGAAAAAGGTCTAAACCATCTGAAAAGCACGTTTGACTGGTGCTCGATGTAAAAAACTCACTGAATCCAAGATCCTTCTTATGAGTGGTCACCGAGAACTGATGACTCTGGTCCACACGTCCATCCAAATAGTCGTAACGAGTTGGCACCACTTTCACGTAGTACTGGTACATGATTCCTCCTCTATTCTCAGTGTTCACTTTTCCATCAAGTGGATAGTTCTTTCCCGGGAAAGATTTTCCAAACGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGCGATACCAAAAATGAG</pcr_primer_p1>
		<pcr_primer_p2>TGTCCGGTACTGTATGAAGTC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>AGAGCGATACCAAAAATGAGGCAAGCGACCTGAAATTAGAATATCTCTTTGGTAGAAGGGACGGGTGAAGTCTTACTGCCTGAATTCTTCGTATTGAACCATTAGTGGACTGAATTCGTATTGGAGGAAGAAACCAGGAAGACCAGCTTGTCCTGAAAAATGAATTTGAAAAACTATAAATTTATTTGGCTACAAGATTTATGTGGCTTCTGACTTCATACAGTACCGGACA</canonical_amplicon>
		<polymorphic_amplicon>AGAGCGATACCAAAAATGAGGCAAGCGACCTGAAATTAGAATATCTCTTTGGTAGAAGGGACGGGTGAAGTCTTACTGCCTGAATTCTTCGTATTGMACCATTAGTGGACTGAATTCGTATTGGAGGAAGAAACCAGGAAGACCAGCTTGTCCTGAAAAATGAATTTGAAAAACTATAAATTTATTTGGCTACAAGATTTATGTGGCTTCTGACTTCATACAGTACCGGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18708</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>445203</contig_pos>
        <strand>+</strand>
        <context>GGGAAGGAAA[C/G]TTCCGCGGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAGTTCACTGTCCCACCCAACGGAATGCGGAGAGGAGGATGGGAAGGAAA</left_flank>
        <right_flank>TTCCGCGGACAGACTGAAAAAACAAAAAGAACAAGACGCAAAACGCCGTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGATTAAAAAGAGGTTACTTACAAGACAACTCGACAATATGACGAATCAATATGAAATAGCTGTGAGCAAGTTGTGTAGTGGTGACACAGTCCCTGTGAAGAACGAGCTGGGAGAAGGTAGTAAAATTCGACTTCCTCCATTTAATTGCATTCTATGTTTCAGACTTCTGTCATAACTGTGCAACTTACGAGGAACACAAGAGAGATAATTGTCTAAAAATGACACGAATGGAAGCTTTTGAAGTTTGTGAAAGAAGATTCAATAAAGTCCAACATGTGAATTTCAGGCGCTTCTTCCCAAAATGCGGTATGATTGGTTGAATATAAAATATCAACTGGTATACGCGAAATATGACCATGACATAGAAGTAGCAGAAAAAGAAGCTGAAACCATGAGCTTACACGAAAACGGAGAAATAAGTCAATGGATGTTGGGATTCATGCCGCCCAGTTCACTGTCCCACCCAACGGAATGCGGAGAGGAGGATGGGAAGGAAAGTTCCGCGGACAGACTGAAAAAACAAAAAGAACAAGACGCAAAACGCCGTCGAGATCTCCATTTGAGAATGGCTGAAGTCAAGTTCGAAATATTTGTTCGAAAGACGGAAGCAGAGCTGAACGCGAGTGAAAGAAGTAACCCAACCGGACGAATCATTCGATTTCATTCAACTTACGAGAAAAACCAGCAAAGACCAGATACTCAAATCAAAATGATGTGCATAGACACTCTTGTTTAAAACCCCCATCGAAGGTCTTCACCAGTAAGTATCTTAATGTCTATGAAATGGTACCAAATTGTTAATTTCCAGAAACAAAACGAACAGGAACGAACGCACTGATCCAAATTTTCTTCCTTTATTTTTAAACTAATAATATGTTTGCCGGGACTTTGGCGCTTCAACCAGAGATCTATGTGAATGGAAGATGAAAATTAAAAATAAAGTTCTAGTCTTACGAACCAAAAAAACACAAGGAATACAGAAATGACCAATTTATATA</canonical>
            <polymorphic>CAGATTAAAAAGAGGTTACTTACAAGACAACTCGACAATATGACGAATCAATATGAAATAGCTGTGAGCAAGTTGTGTAGTGGTGACACAGTCCCTGTGAAGAACGAGCTGGGAGAAGGTAGTAAAATTCGACTTCCTCCATTTAATTGCATTCTATGTTTCAGACTTCTGTCATAACTGTGCAACTTACGAGGAACACAAGAGAGATAATTGTCTAAAAATGACACGAATGGAAGCTTTTGAAGTTTGTGAAAGAAGATTCAATAAAGTCCAACATGTGAATTTCAGGCGCTTCTTCCCAAAATGCGGTATGATTGGTTGAATATAAAATATCAACTGGTATACGCGAAATATGACCATGACATAGAAGTAGCAGAAAAAGAAGCTGAAACCATGAGCTTACACGAAAACGGAGAAATAAGTCAATGGATGTTGGGATTCATGCCGCCCAGTTCACTGTCCCACCCAACGGAATGCGGAGAGGAGGATGGGAAGGAAASTTCCGCGGACAGACTGAAAAAACAAAAAGAACAAGACGCAAAACGCCGTCGAGATCTCCATTTGAGAATGGCTGAAGTCAAGTTCGAAATATTTGTTCGAAAGACGGAAGCAGAGCTGAACGCGAGTGAAAGAAGTAACCCAACCGGACGAATCATTCGATTTCATTCAACTTACGAGAAAAACCAGCAAAGACCAGATACTCAAATCAAAATGATGTGCATAGACACTCTTGTTTAAAACCCCCATCGAAGGTCTTCACCAGTAAGTATCTTAATGTCTATGAAATGGTACCAAATTGTTAATTTCCAGAAACAAAACGAACAGGAACGAACGCACTGATCCAAATTTTCTTCCTTTATTTTTAAACTAATAATATGTTTGCCGGGACTTTGGCGCTTCAACCAGAGATCTATGTGAATGGAAGATGAAAATTAAAAATAAAGTTCTAGTCTTACGAACCAAAAAAACACAAGGAATACAGAAATGACCAATTTATATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTGGTATACGCGAAATATGAC</pcr_primer_p1>
		<pcr_primer_p2>GAACTTGACTTCAGCCATTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTGGTATACGCGAAATATGACCATGACATAGAAGTAGCAGAAAAAGAAGCTGAAACCATGAGCTTACACGAAAACGGAGAAATAAGTCAATGGATGTTGGGATTCATGCCGCCCAGTTCACTGTCCCACCCAACGGAATGCGGAGAGGAGGATGGGAAGGAAAGTTCCGCGGACAGACTGAAAAAACAAAAAGAACAAGACGCAAAACGCCGTCGAGATCTCCATTTGAGAATGGCTGAAGTCAAGTTC</canonical_amplicon>
		<polymorphic_amplicon>ACTGGTATACGCGAAATATGACCATGACATAGAAGTAGCAGAAAAAGAAGCTGAAACCATGAGCTTACACGAAAACGGAGAAATAAGTCAATGGATGTTGGGATTCATGCCGCCCAGTTCACTGTCCCACCCAACGGAATGCGGAGAGGAGGATGGGAAGGAAASTTCCGCGGACAGACTGAAAAAACAAAAAGAACAAGACGCAAAACGCCGTCGAGATCTCCATTTGAGAATGGCTGAAGTCAAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18709</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>445063</contig_pos>
        <strand>+</strand>
        <context>AATATGACCA[G/T]GACATAGAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATGATTGGTTGAATATAAAATATCAACTGGTATACGCGAAATATGACCA</left_flank>
        <right_flank>GACATAGAAGTAGCAGAAAAAGAAGCTGAAACCATGAGCTTACACGAAAA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAATTGCTGTTTCTGCGGAGAAACATTTCTCGAAGACATAGAAGAACACCAAAACCAATGTCCGGATCAGTTTTCGCTCTCACCATATAAAGTAAGTTCCTCGAAACTTTTCATATTACTCCTATGTAAATTTCTGTCAGATTAAAAAGAGGTTACTTACAAGACAACTCGACAATATGACGAATCAATATGAAATAGCTGTGAGCAAGTTGTGTAGTGGTGACACAGTCCCTGTGAAGAACGAGCTGGGAGAAGGTAGTAAAATTCGACTTCCTCCATTTAATTGCATTCTATGTTTCAGACTTCTGTCATAACTGTGCAACTTACGAGGAACACAAGAGAGATAATTGTCTAAAAATGACACGAATGGAAGCTTTTGAAGTTTGTGAAAGAAGATTCAATAAAGTCCAACATGTGAATTTCAGGCGCTTCTTCCCAAAATGCGGTATGATTGGTTGAATATAAAATATCAACTGGTATACGCGAAATATGACCATGACATAGAAGTAGCAGAAAAAGAAGCTGAAACCATGAGCTTACACGAAAACGGAGAAATAAGTCAATGGATGTTGGGATTCATGCCGCCCAGTTCACTGTCCCACCCAACGGAATGCGGAGAGGAGGATGGGAAGGAAAGTTCCGCGGACAGACTGAAAAAACAAAAAGAACAAGACGCAAAACGCCGTCGAGATCTCCATTTGAGAATGGCTGAAGTCAAGTTCGAAATATTTGTTCGAAAGACGGAAGCAGAGCTGAACGCGAGTGAAAGAAGTAACCCAACCGGACGAATCATTCGATTTCATTCAACTTACGAGAAAAACCAGCAAAGACCAGATACTCAAATCAAAATGATGTGCATAGACACTCTTGTTTAAAACCCCCATCGAAGGTCTTCACCAGTAAGTATCTTAATGTCTATGAAATGGTACCAAATTGTTAATTTCCAGAAACAAAACGAACAGGAACGAACGCACTGATCCAAATTTTCTTCCTTTAT</canonical>
            <polymorphic>GAAAAATTGCTGTTTCTGCGGAGAAACATTTCTCGAAGACATAGAAGAACACCAAAACCAATGTCCGGATCAGTTTTCGCTCTCACCATATAAAGTAAGTTCCTCGAAACTTTTCATATTACTCCTATGTAAATTTCTGTCAGATTAAAAAGAGGTTACTTACAAGACAACTCGACAATATGACGAATCAATATGAAATAGCTGTGAGCAAGTTGTGTAGTGGTGACACAGTCCCTGTGAAGAACGAGCTGGGAGAAGGTAGTAAAATTCGACTTCCTCCATTTAATTGCATTCTATGTTTCAGACTTCTGTCATAACTGTGCAACTTACGAGGAACACAAGAGAGATAATTGTCTAAAAATGACACGAATGGAAGCTTTTGAAGTTTGTGAAAGAAGATTCAATAAAGTCCAACATGTGAATTTCAGGCGCTTCTTCCCAAAATGCGGTATGATTGGTTGAATATAAAATATCAACTGGTATACGCGAAATATGACCAKGACATAGAAGTAGCAGAAAAAGAAGCTGAAACCATGAGCTTACACGAAAACGGAGAAATAAGTCAATGGATGTTGGGATTCATGCCGCCCAGTTCACTGTCCCACCCAACGGAATGCGGAGAGGAGGATGGGAAGGAAAGTTCCGCGGACAGACTGAAAAAACAAAAAGAACAAGACGCAAAACGCCGTCGAGATCTCCATTTGAGAATGGCTGAAGTCAAGTTCGAAATATTTGTTCGAAAGACGGAAGCAGAGCTGAACGCGAGTGAAAGAAGTAACCCAACCGGACGAATCATTCGATTTCATTCAACTTACGAGAAAAACCAGCAAAGACCAGATACTCAAATCAAAATGATGTGCATAGACACTCTTGTTTAAAACCCCCATCGAAGGTCTTCACCAGTAAGTATCTTAATGTCTATGAAATGGTACCAAATTGTTAATTTCCAGAAACAAAACGAACAGGAACGAACGCACTGATCCAAATTTTCTTCCTTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>419 415 83 48 35</canonical_bands>
                <polymorphic_bands>419 415 118 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTACGAGGAACACAAGAGAG</pcr_primer_p1>
		<pcr_primer_p2>CAACATCCATTGACTTATTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACTTACGAGGAACACAAGAGAGATAATTGTCTAAAAATGACACGAATGGAAGCTTTTGAAGTTTGTGAAAGAAGATTCAATAAAGTCCAACATGTGAATTTCAGGCGCTTCTTCCCAAAATGCGGTATGATTGGTTGAATATAAAATATCAACTGGTATACGCGAAATATGACCATGACATAGAAGTAGCAGAAAAAGAAGCTGAAACCATGAGCTTACACGAAAACGGAGAAATAAGTCAATGGATGTTG</canonical_amplicon>
		<polymorphic_amplicon>ACTTACGAGGAACACAAGAGAGATAATTGTCTAAAAATGACACGAATGGAAGCTTTTGAAGTTTGTGAAAGAAGATTCAATAAAGTCCAACATGTGAATTTCAGGCGCTTCTTCCCAAAATGCGGTATGATTGGTTGAATATAAAATATCAACTGGTATACGCGAAATATGACCAKGACATAGAAGTAGCAGAAAAAGAAGCTGAAACCATGAGCTTACACGAAAACGGAGAAATAAGTCAATGGATGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18710</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>447998</contig_pos>
        <strand>+</strand>
        <context>AGGTAAAATG[A/C]GCTGTCTCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAACTTTAGAGAGAAACCTGATAAAGACTCACATTTTTGAGGTAAAATG</left_flank>
        <right_flank>GCTGTCTCAATATGAGCACCCAGGTTAAGAATCATCTGCTTTTTGAAATA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAACTGATGAGCACATGGAATTCATCGAATCGATTATGAAACAGAAGGACTTGGTAAGTTTTTGCAATGTATGAATCGTGACAAGATGAAAGATGTTTCAGGAAACGGCGTTGAAAGCCAACTCGGAGGCAGCGGAAGCGCTGGAAAAGGGTATCGAGAATCTTGTGACGGCGAGCGAATTTTTCGTTCAGTTGAAGTCCGAAATGGAATGTGGCAGTTACAGAGGAGCAAGTATCAGAATAGATATGCAGGTATGTAATTTGAGGTTGAAACATGTGAAAAAACAGTCCGCCACCGTATCTCGATGTTTCTTCCGATGTTTTTCATGTCTGTTCAAAATTTATGAGATTCAAGCTTCGAGCAGGCAGATCTCGGTTGAACTTCATTTACGCTGCGAGTTTATCCAAAACCTAGGCTAGCTGTTCTTTAAAAATTTAGAAAAAATGGAAGAACTTTAGAGAGAAACCTGATAAAGACTCACATTTTTGAGGTAAAATGCGCTGTCTCAATATGAGCACCCAGGTTAAGAATCATCTGCTTTTTGAAATATTTTTCAACTGAAACAAAAATCCTCCTCCGCACTTCGAACGTATTATCGATTTTCTCACTTAATCCCACTTTTCAGGTTTCTACTCGTGTCATGGATGATGCTCCGGATTGCAAATTGAACATGCAACTCAGCACTACATCCTGGGAAAAGAAACTGAATATGACGATGGCTACGAGTGAGAAGTTGCTCGCTGAGCTTCAAAATGCTCACCGCATTTTGCGTGAAGAGAAAGCAAATGAGTTGGAGGAAAACAACAAATAATTATGATCCATATTCTTTTTTTATCTATTTCATGATCTTGTTTTATGGGTGATTGACGGTTATGTATAGGATATTTTGCATATTCATTTACAAGTCATCGAATTCGAAGATTTGTATTTATTCGCCTAATTTGAAGTTTGTGTTAAATATATAAATTTGAATTTTTTTTTGAGTTTTTTCCTCAAAAG</canonical>
            <polymorphic>CCAACTGATGAGCACATGGAATTCATCGAATCGATTATGAAACAGAAGGACTTGGTAAGTTTTTGCAATGTATGAATCGTGACAAGATGAAAGATGTTTCAGGAAACGGCGTTGAAAGCCAACTCGGAGGCAGCGGAAGCGCTGGAAAAGGGTATCGAGAATCTTGTGACGGCGAGCGAATTTTTCGTTCAGTTGAAGTCCGAAATGGAATGTGGCAGTTACAGAGGAGCAAGTATCAGAATAGATATGCAGGTATGTAATTTGAGGTTGAAACATGTGAAAAAACAGTCCGCCACCGTATCTCGATGTTTCTTCCGATGTTTTTCATGTCTGTTCAAAATTTATGAGATTCAAGCTTCGAGCAGGCAGATCTCGGTTGAACTTCATTTACGCTGCGAGTTTATCCAAAACCTAGGCTAGCTGTTCTTTAAAAATTTAGAAAAAATGGAAGAACTTTAGAGAGAAACCTGATAAAGACTCACATTTTTGAGGTAAAATGMGCTGTCTCAATATGAGCACCCAGGTTAAGAATCATCTGCTTTTTGAAATATTTTTCAACTGAAACAAAAATCCTCCTCCGCACTTCGAACGTATTATCGATTTTCTCACTTAATCCCACTTTTCAGGTTTCTACTCGTGTCATGGATGATGCTCCGGATTGCAAATTGAACATGCAACTCAGCACTACATCCTGGGAAAAGAAACTGAATATGACGATGGCTACGAGTGAGAAGTTGCTCGCTGAGCTTCAAAATGCTCACCGCATTTTGCGTGAAGAGAAAGCAAATGAGTTGGAGGAAAACAACAAATAATTATGATCCATATTCTTTTTTTATCTATTTCATGATCTTGTTTTATGGGTGATTGACGGTTATGTATAGGATATTTTGCATATTCATTTACAAGTCATCGAATTCGAAGATTTGTATTTATTCGCCTAATTTGAAGTTTGTGTTAAATATATAAATTTGAATTTTTTTTTGAGTTTTTTCCTCAAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>499 360 141</canonical_bands>
                <polymorphic_bands>859 141</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTTTCTTCCGATGTTTTTC</pcr_primer_p1>
		<pcr_primer_p2>AAAATATTTCAAAAAGCAGATGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGTTTCTTCCGATGTTTTTCATGTCTGTTCAAAATTTATGAGATTCAAGCTTCGAGCAGGCAGATCTCGGTTGAACTTCATTTACGCTGCGAGTTTATCCAAAACCTAGGCTAGCTGTTCTTTAAAAATTTAGAAAAAATGGAAGAACTTTAGAGAGAAACCTGATAAAGACTCACATTTTTGAGGTAAAATGCGCTGTCTCAATATGAGCACCCAGGTTAAGAATCATCTGCTTTTTGAAATATTTT</canonical_amplicon>
		<polymorphic_amplicon>ATGTTTCTTCCGATGTTTTTCATGTCTGTTCAAAATTTATGAGATTCAAGCTTCGAGCAGGCAGATCTCGGTTGAACTTCATTTACGCTGCGAGTTTATCCAAAACCTAGGCTAGCTGTTCTTTAAAAATTTAGAAAAAATGGAAGAACTTTAGAGAGAAACCTGATAAAGACTCACATTTTTGAGGTAAAATGMGCTGTCTCAATATGAGCACCCAGGTTAAGAATCATCTGCTTTTTGAAATATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18711</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>448070</contig_pos>
        <strand>+</strand>
        <context>AAACAAAAAT[A/C]CTCCTCCGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGGTTAAGAATCATCTGCTTTTTGAAATATTTTTCAACTGAAACAAAAAT</left_flank>
        <right_flank>CTCCTCCGCACTTCGAACGTATTATCGATTTTCTCACTTAATCCCACTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAATCGTGACAAGATGAAAGATGTTTCAGGAAACGGCGTTGAAAGCCAACTCGGAGGCAGCGGAAGCGCTGGAAAAGGGTATCGAGAATCTTGTGACGGCGAGCGAATTTTTCGTTCAGTTGAAGTCCGAAATGGAATGTGGCAGTTACAGAGGAGCAAGTATCAGAATAGATATGCAGGTATGTAATTTGAGGTTGAAACATGTGAAAAAACAGTCCGCCACCGTATCTCGATGTTTCTTCCGATGTTTTTCATGTCTGTTCAAAATTTATGAGATTCAAGCTTCGAGCAGGCAGATCTCGGTTGAACTTCATTTACGCTGCGAGTTTATCCAAAACCTAGGCTAGCTGTTCTTTAAAAATTTAGAAAAAATGGAAGAACTTTAGAGAGAAACCTGATAAAGACTCACATTTTTGAGGTAAAATGCGCTGTCTCAATATGAGCACCCAGGTTAAGAATCATCTGCTTTTTGAAATATTTTTCAACTGAAACAAAAATCCTCCTCCGCACTTCGAACGTATTATCGATTTTCTCACTTAATCCCACTTTTCAGGTTTCTACTCGTGTCATGGATGATGCTCCGGATTGCAAATTGAACATGCAACTCAGCACTACATCCTGGGAAAAGAAACTGAATATGACGATGGCTACGAGTGAGAAGTTGCTCGCTGAGCTTCAAAATGCTCACCGCATTTTGCGTGAAGAGAAAGCAAATGAGTTGGAGGAAAACAACAAATAATTATGATCCATATTCTTTTTTTATCTATTTCATGATCTTGTTTTATGGGTGATTGACGGTTATGTATAGGATATTTTGCATATTCATTTACAAGTCATCGAATTCGAAGATTTGTATTTATTCGCCTAATTTGAAGTTTGTGTTAAATATATAAATTTGAATTTTTTTTTGAGTTTTTTCCTCAAAAGTCGGTTATGATCCCGTTCAAATGTCTCTTTGAAATATCAAGGTTCCTGGTATTCGAAAATTTCTGTTGTAAT</canonical>
            <polymorphic>TGAATCGTGACAAGATGAAAGATGTTTCAGGAAACGGCGTTGAAAGCCAACTCGGAGGCAGCGGAAGCGCTGGAAAAGGGTATCGAGAATCTTGTGACGGCGAGCGAATTTTTCGTTCAGTTGAAGTCCGAAATGGAATGTGGCAGTTACAGAGGAGCAAGTATCAGAATAGATATGCAGGTATGTAATTTGAGGTTGAAACATGTGAAAAAACAGTCCGCCACCGTATCTCGATGTTTCTTCCGATGTTTTTCATGTCTGTTCAAAATTTATGAGATTCAAGCTTCGAGCAGGCAGATCTCGGTTGAACTTCATTTACGCTGCGAGTTTATCCAAAACCTAGGCTAGCTGTTCTTTAAAAATTTAGAAAAAATGGAAGAACTTTAGAGAGAAACCTGATAAAGACTCACATTTTTGAGGTAAAATGCGCTGTCTCAATATGAGCACCCAGGTTAAGAATCATCTGCTTTTTGAAATATTTTTCAACTGAAACAAAAATMCTCCTCCGCACTTCGAACGTATTATCGATTTTCTCACTTAATCCCACTTTTCAGGTTTCTACTCGTGTCATGGATGATGCTCCGGATTGCAAATTGAACATGCAACTCAGCACTACATCCTGGGAAAAGAAACTGAATATGACGATGGCTACGAGTGAGAAGTTGCTCGCTGAGCTTCAAAATGCTCACCGCATTTTGCGTGAAGAGAAAGCAAATGAGTTGGAGGAAAACAACAAATAATTATGATCCATATTCTTTTTTTATCTATTTCATGATCTTGTTTTATGGGTGATTGACGGTTATGTATAGGATATTTTGCATATTCATTTACAAGTCATCGAATTCGAAGATTTGTATTTATTCGCCTAATTTGAAGTTTGTGTTAAATATATAAATTTGAATTTTTTTTTGAGTTTTTTCCTCAAAAGTCGGTTATGATCCCGTTCAAATGTCTCTTTGAAATATCAAGGTTCCTGGTATTCGAAAATTTCTGTTGTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGACTCACATTTTTGAGGTAA</pcr_primer_p1>
		<pcr_primer_p2>CATCGTCATATTCAGTTTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAGACTCACATTTTTGAGGTAAAATGCGCTGTCTCAATATGAGCACCCAGGTTAAGAATCATCTGCTTTTTGAAATATTTTTCAACTGAAACAAAAATCCTCCTCCGCACTTCGAACGTATTATCGATTTTCTCACTTAATCCCACTTTTCAGGTTTCTACTCGTGTCATGGATGATGCTCCGGATTGCAAATTGAACATGCAACTCAGCACTACATCCTGGGAAAAGAAACTGAATATGACGATG</canonical_amplicon>
		<polymorphic_amplicon>AAAGACTCACATTTTTGAGGTAAAATGCGCTGTCTCAATATGAGCACCCAGGTTAAGAATCATCTGCTTTTTGAAATATTTTTCAACTGAAACAAAAATMCTCCTCCGCACTTCGAACGTATTATCGATTTTCTCACTTAATCCCACTTTTCAGGTTTCTACTCGTGTCATGGATGATGCTCCGGATTGCAAATTGAACATGCAACTCAGCACTACATCCTGGGAAAAGAAACTGAATATGACGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18712</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>448098</contig_pos>
        <strand>+</strand>
        <context>CGTATTATCG[A/G]TTTTCTCACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTTCAACTGAAACAAAAATCCTCCTCCGCACTTCGAACGTATTATCG</left_flank>
        <right_flank>TTTTCTCACTTAATCCCACTTTTCAGGTTTCTACTCGTGTCATGGATGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAAACGGCGTTGAAAGCCAACTCGGAGGCAGCGGAAGCGCTGGAAAAGGGTATCGAGAATCTTGTGACGGCGAGCGAATTTTTCGTTCAGTTGAAGTCCGAAATGGAATGTGGCAGTTACAGAGGAGCAAGTATCAGAATAGATATGCAGGTATGTAATTTGAGGTTGAAACATGTGAAAAAACAGTCCGCCACCGTATCTCGATGTTTCTTCCGATGTTTTTCATGTCTGTTCAAAATTTATGAGATTCAAGCTTCGAGCAGGCAGATCTCGGTTGAACTTCATTTACGCTGCGAGTTTATCCAAAACCTAGGCTAGCTGTTCTTTAAAAATTTAGAAAAAATGGAAGAACTTTAGAGAGAAACCTGATAAAGACTCACATTTTTGAGGTAAAATGCGCTGTCTCAATATGAGCACCCAGGTTAAGAATCATCTGCTTTTTGAAATATTTTTCAACTGAAACAAAAATCCTCCTCCGCACTTCGAACGTATTATCGATTTTCTCACTTAATCCCACTTTTCAGGTTTCTACTCGTGTCATGGATGATGCTCCGGATTGCAAATTGAACATGCAACTCAGCACTACATCCTGGGAAAAGAAACTGAATATGACGATGGCTACGAGTGAGAAGTTGCTCGCTGAGCTTCAAAATGCTCACCGCATTTTGCGTGAAGAGAAAGCAAATGAGTTGGAGGAAAACAACAAATAATTATGATCCATATTCTTTTTTTATCTATTTCATGATCTTGTTTTATGGGTGATTGACGGTTATGTATAGGATATTTTGCATATTCATTTACAAGTCATCGAATTCGAAGATTTGTATTTATTCGCCTAATTTGAAGTTTGTGTTAAATATATAAATTTGAATTTTTTTTTGAGTTTTTTCCTCAAAAGTCGGTTATGATCCCGTTCAAATGTCTCTTTGAAATATCAAGGTTCCTGGTATTCGAAAATTTCTGTTGTAATATTTTGTGCTATCTTCCACATATGCTAG</canonical>
            <polymorphic>AGGAAACGGCGTTGAAAGCCAACTCGGAGGCAGCGGAAGCGCTGGAAAAGGGTATCGAGAATCTTGTGACGGCGAGCGAATTTTTCGTTCAGTTGAAGTCCGAAATGGAATGTGGCAGTTACAGAGGAGCAAGTATCAGAATAGATATGCAGGTATGTAATTTGAGGTTGAAACATGTGAAAAAACAGTCCGCCACCGTATCTCGATGTTTCTTCCGATGTTTTTCATGTCTGTTCAAAATTTATGAGATTCAAGCTTCGAGCAGGCAGATCTCGGTTGAACTTCATTTACGCTGCGAGTTTATCCAAAACCTAGGCTAGCTGTTCTTTAAAAATTTAGAAAAAATGGAAGAACTTTAGAGAGAAACCTGATAAAGACTCACATTTTTGAGGTAAAATGCGCTGTCTCAATATGAGCACCCAGGTTAAGAATCATCTGCTTTTTGAAATATTTTTCAACTGAAACAAAAATCCTCCTCCGCACTTCGAACGTATTATCGRTTTTCTCACTTAATCCCACTTTTCAGGTTTCTACTCGTGTCATGGATGATGCTCCGGATTGCAAATTGAACATGCAACTCAGCACTACATCCTGGGAAAAGAAACTGAATATGACGATGGCTACGAGTGAGAAGTTGCTCGCTGAGCTTCAAAATGCTCACCGCATTTTGCGTGAAGAGAAAGCAAATGAGTTGGAGGAAAACAACAAATAATTATGATCCATATTCTTTTTTTATCTATTTCATGATCTTGTTTTATGGGTGATTGACGGTTATGTATAGGATATTTTGCATATTCATTTACAAGTCATCGAATTCGAAGATTTGTATTTATTCGCCTAATTTGAAGTTTGTGTTAAATATATAAATTTGAATTTTTTTTTGAGTTTTTTCCTCAAAAGTCGGTTATGATCCCGTTCAAATGTCTCTTTGAAATATCAAGGTTCCTGGTATTCGAAAATTTCTGTTGTAATATTTTGTGCTATCTTCCACATATGCTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>313 227 148 137 56 55 46 12 6</canonical_bands>
                <polymorphic_bands>325 227 148 137 56 55 46 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGACTCACATTTTTGAGGTAA</pcr_primer_p1>
		<pcr_primer_p2>CATCGTCATATTCAGTTTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAGACTCACATTTTTGAGGTAAAATGCGCTGTCTCAATATGAGCACCCAGGTTAAGAATCATCTGCTTTTTGAAATATTTTTCAACTGAAACAAAAATCCTCCTCCGCACTTCGAACGTATTATCGATTTTCTCACTTAATCCCACTTTTCAGGTTTCTACTCGTGTCATGGATGATGCTCCGGATTGCAAATTGAACATGCAACTCAGCACTACATCCTGGGAAAAGAAACTGAATATGACGATG</canonical_amplicon>
		<polymorphic_amplicon>AAAGACTCACATTTTTGAGGTAAAATGCGCTGTCTCAATATGAGCACCCAGGTTAAGAATCATCTGCTTTTTGAAATATTTTTCAACTGAAACAAAAATCCTCCTCCGCACTTCGAACGTATTATCGRTTTTCTCACTTAATCCCACTTTTCAGGTTTCTACTCGTGTCATGGATGATGCTCCGGATTGCAAATTGAACATGCAACTCAGCACTACATCCTGGGAAAAGAAACTGAATATGACGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18713</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>449716</contig_pos>
        <strand>+</strand>
        <context>TTCTAATATT[A/G]AATATCTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTTTCTTAATTTTTCTGGATTTTTCAATTAACTTTTTTTTTCTAATATT</left_flank>
        <right_flank>AATATCTTGAACTCATCTGTTGTCTGTATCTAAACGATAAATGATATTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAAATACGGTATGATTGGCTGAACATACACTATCAGCTTGTGAACGTGGATTTCGACGAAAGAATGGAAACGGCGGAAAAAGAAGCTGCAAGCGGAAACTTGAATAAGGAAAGGCAATTAAGTCAACAGATGTTGGAACTATTGCAGTTCAGCCCATCGTTCAGCTCAATGAGGTGCGGAAGAGAAGATGAGAAGGAAAAAATAGCGGACGTCCTGAAAAACCAGTCGGAGCCTTTCGAGATAGAGAAACGAAAAATTGAACGAAGGAAGAATTTCGAAATGAGAAAGGGTGAAATGAAGTTTGACGAATATGTTCGAAAGACGAAAATATCTCTGAGCGCGAGGGAAACAAGAAACTCGGGCGCGCGAGTCATTCGATTTCATTCAACTTTCAAGAAAGGTCAGCAGAGACCAGATACTCAAATAAAAATGATGTACAAAGTGTGAACTTTCTTAATTTTTCTGGATTTTTCAATTAACTTTTTTTTTCTAATATTGAATATCTTGAACTCATCTGTTGTCTGTATCTAAACGATAAATGATATTTTTGAAATGTTGCTGCTCTACGGAGAATTATGAACTTTGCTCGATTTTAAAAACCTAGCCACCAAATAATAATTATCACCACATTATTGGATATTTTTCTGGGACTTATTTCAGAAAATTCTGTTTAGGACCAACAAAAAAAGTTGAAAAACGTTTTTCTTATATTTTTTGATTCTTGAATCAATGAACCTTTGCAACGATCGAAACGCTGCGGTTTAAAGAAAACAAATTGGAACATTGCGATTTTTTTACGATCGAAACGCTGCGGTTTAAAGAAAACAAATTGGAACATTGCGATTTTTTTACATAATTATGATTGGCCACATTTATTCCAAGTTGAATTGTGTGAAGTAAACAATTCCAAATTCAATCGCCTTTATTTGTACAAAAACCCGTTTCCTAACTTTCCAATTCTAAACAATTCAAACTTTGTGATAAATAAAAGGTGATTT</canonical>
            <polymorphic>CCAAAATACGGTATGATTGGCTGAACATACACTATCAGCTTGTGAACGTGGATTTCGACGAAAGAATGGAAACGGCGGAAAAAGAAGCTGCAAGCGGAAACTTGAATAAGGAAAGGCAATTAAGTCAACAGATGTTGGAACTATTGCAGTTCAGCCCATCGTTCAGCTCAATGAGGTGCGGAAGAGAAGATGAGAAGGAAAAAATAGCGGACGTCCTGAAAAACCAGTCGGAGCCTTTCGAGATAGAGAAACGAAAAATTGAACGAAGGAAGAATTTCGAAATGAGAAAGGGTGAAATGAAGTTTGACGAATATGTTCGAAAGACGAAAATATCTCTGAGCGCGAGGGAAACAAGAAACTCGGGCGCGCGAGTCATTCGATTTCATTCAACTTTCAAGAAAGGTCAGCAGAGACCAGATACTCAAATAAAAATGATGTACAAAGTGTGAACTTTCTTAATTTTTCTGGATTTTTCAATTAACTTTTTTTTTCTAATATTRAATATCTTGAACTCATCTGTTGTCTGTATCTAAACGATAAATGATATTTTTGAAATGTTGCTGCTCTACGGAGAATTATGAACTTTGCTCGATTTTAAAAACCTAGCCACCAAATAATAATTATCACCACATTATTGGATATTTTTCTGGGACTTATTTCAGAAAATTCTGTTTAGGACCAACAAAAAAAGTTGAAAAACGTTTTTCTTATATTTTTTGATTCTTGAATCAATGAACCTTTGCAACGATCGAAACGCTGCGGTTTAAAGAAAACAAATTGGAACATTGCGATTTTTTTACGATCGAAACGCTGCGGTTTAAAGAAAACAAATTGGAACATTGCGATTTTTTTACATAATTATGATTGGCCACATTTATTCCAAGTTGAATTGTGTGAAGTAAACAATTCCAAATTCAATCGCCTTTATTTGTACAAAAACCCGTTTCCTAACTTTCCAATTCTAAACAATTCAAACTTTGTGATAAATAAAAGGTGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGAGACCAGATACTCAAATAA</pcr_primer_p1>
		<pcr_primer_p2>GTCCCAGAAAAATATCCAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GCAGAGACCAGATACTCAAATAAAAATGATGTACAAAGTGTGAACTTTCTTAATTTTTCTGGATTTTTCAATTAACTTTTTTTTTCTAATATTGAATATCTTGAACTCATCTGTTGTCTGTATCTAAACGATAAATGATATTTTTGAAATGTTGCTGCTCTACGGAGAATTATGAACTTTGCTCGATTTTAAAAACCTAGCCACCAAATAATAATTATCACCACATTATTGGATATTTTTCTGGGAC</canonical_amplicon>
		<polymorphic_amplicon>GCAGAGACCAGATACTCAAATAAAAATGATGTACAAAGTGTGAACTTTCTTAATTTTTCTGGATTTTTCAATTAACTTTTTTTTTCTAATATTRAATATCTTGAACTCATCTGTTGTCTGTATCTAAACGATAAATGATATTTTTGAAATGTTGCTGCTCTACGGAGAATTATGAACTTTGCTCGATTTTAAAAACCTAGCCACCAAATAATAATTATCACCACATTATTGGATATTTTTCTGGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18714</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>455652</contig_pos>
        <strand>+</strand>
        <context>GTTTTCGAGA[C/T]AAATTTCTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAAAGACTGAAAATATAGTTGATCTAAACCCAAAGGCATGTTTTCGAGA</left_flank>
        <right_flank>AAATTTCTGTTTTTCTCCGTTTTTTTCTACTCCTTCTTCCACTCATTTCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGAATCTGCAAGGATCAATTTCGAAATATCAAGAATGTTACTTCGCGACGTCTCTTGGAAACCAACCAAAATCACTATAAACAGCGTAACTGAAGGCCACCCTATACTCGCATTTTGAGCTTAATTATTTCCGATTTTATGAGAGATTTCAAAAATATGTTAACTGATAAAATGTTGGTTATATCACGGCATATTAGTTGGCAAATTTCCGTTATTCGCTGCAGGATTTGAGATAATTGAGCTCAAAGGGAGGTATAAAGTGGCATTCTAGAAATCTTTTTACGGTGTGTTTCAAGTTTCCGAAAACAAATGCGACCTTTCATGATAGCAGAATTTTACGTTTAATAAGAAGCTCTGATAACTGAAACTATTACCCAAAATAACGAAGATGAAAAATCCCAAAACACGTCTTTTTTAGAAAAAGTATTACAATTCTGCTCCTACAAACAAAAGACTGAAAATATAGTTGATCTAAACCCAAAGGCATGTTTTCGAGACAAATTTCTGTTTTTCTCCGTTTTTTTCTACTCCTTCTTCCACTCATTTCACCAGTTGTTCGACGTGCTCAGTTCTCTTGTTCGGGGTCGGAATGACAAATTCTAATATTTTCTGTCCTAATCCGTTTTTTTCACTACACTGTGAGAGAAAACAACTTTTGTTCTGAAAACTACAAAGCAGTACGGTAAAAGCTTCTTCGAAACACCGAAAAAGGGTCCACTGATCTGGAACTCTTGGATCTCAAGAGTTCTGTCTTATTCCAAAAAAAGACTGGTCGTTTTATTTTGGAAGAAAAAAGGTACAGTAGTATTTTTCAAGTACCCCTTCTTCTTTTTTCTCCGTTTTTTTTCTTTTCTCGCAATTCCTATTCCATTCGGTCTTCTTTCAATATCCTCACCAATTTTTTTTCCATTCAGTTTTCCTATCTCCGGAATGTGAATTGAGAAAAAAGGATGAGGAAGAAAGGTTGGAAAAGTGTAGCACTACCTATAAAAAAGGAA</canonical>
            <polymorphic>ACAGAATCTGCAAGGATCAATTTCGAAATATCAAGAATGTTACTTCGCGACGTCTCTTGGAAACCAACCAAAATCACTATAAACAGCGTAACTGAAGGCCACCCTATACTCGCATTTTGAGCTTAATTATTTCCGATTTTATGAGAGATTTCAAAAATATGTTAACTGATAAAATGTTGGTTATATCACGGCATATTAGTTGGCAAATTTCCGTTATTCGCTGCAGGATTTGAGATAATTGAGCTCAAAGGGAGGTATAAAGTGGCATTCTAGAAATCTTTTTACGGTGTGTTTCAAGTTTCCGAAAACAAATGCGACCTTTCATGATAGCAGAATTTTACGTTTAATAAGAAGCTCTGATAACTGAAACTATTACCCAAAATAACGAAGATGAAAAATCCCAAAACACGTCTTTTTTAGAAAAAGTATTACAATTCTGCTCCTACAAACAAAAGACTGAAAATATAGTTGATCTAAACCCAAAGGCATGTTTTCGAGAYAAATTTCTGTTTTTCTCCGTTTTTTTCTACTCCTTCTTCCACTCATTTCACCAGTTGTTCGACGTGCTCAGTTCTCTTGTTCGGGGTCGGAATGACAAATTCTAATATTTTCTGTCCTAATCCGTTTTTTTCACTACACTGTGAGAGAAAACAACTTTTGTTCTGAAAACTACAAAGCAGTACGGTAAAAGCTTCTTCGAAACACCGAAAAAGGGTCCACTGATCTGGAACTCTTGGATCTCAAGAGTTCTGTCTTATTCCAAAAAAAGACTGGTCGTTTTATTTTGGAAGAAAAAAGGTACAGTAGTATTTTTCAAGTACCCCTTCTTCTTTTTTCTCCGTTTTTTTTCTTTTCTCGCAATTCCTATTCCATTCGGTCTTCTTTCAATATCCTCACCAATTTTTTTTCCATTCAGTTTTCCTATCTCCGGAATGTGAATTGAGAAAAAAGGATGAGGAAGAAAGGTTGGAAAAGTGTAGCACTACCTATAAAAAAGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCTACAAACAAAAGACTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTACCGTACTGCTTTGTAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCCTACAAACAAAAGACTGAAAATATAGTTGATCTAAACCCAAAGGCATGTTTTCGAGACAAATTTCTGTTTTTCTCCGTTTTTTTCTACTCCTTCTTCCACTCATTTCACCAGTTGTTCGACGTGCTCAGTTCTCTTGTTCGGGGTCGGAATGACAAATTCTAATATTTTCTGTCCTAATCCGTTTTTTTCACTACACTGTGAGAGAAAACAACTTTTGTTCTGAAAACTACAAAGCAGTACGGTAAA</canonical_amplicon>
		<polymorphic_amplicon>CTCCTACAAACAAAAGACTGAAAATATAGTTGATCTAAACCCAAAGGCATGTTTTCGAGAYAAATTTCTGTTTTTCTCCGTTTTTTTCTACTCCTTCTTCCACTCATTTCACCAGTTGTTCGACGTGCTCAGTTCTCTTGTTCGGGGTCGGAATGACAAATTCTAATATTTTCTGTCCTAATCCGTTTTTTTCACTACACTGTGAGAGAAAACAACTTTTGTTCTGAAAACTACAAAGCAGTACGGTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18715</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>455712</contig_pos>
        <strand>+</strand>
        <context>ACCAGTTGTT[C/T]GACGTGCTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTCTCCGTTTTTTTCTACTCCTTCTTCCACTCATTTCACCAGTTGTT</left_flank>
        <right_flank>GACGTGCTCAGTTCTCTTGTTCGGGGTCGGAATGACAAATTCTAATATTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACCAACCAAAATCACTATAAACAGCGTAACTGAAGGCCACCCTATACTCGCATTTTGAGCTTAATTATTTCCGATTTTATGAGAGATTTCAAAAATATGTTAACTGATAAAATGTTGGTTATATCACGGCATATTAGTTGGCAAATTTCCGTTATTCGCTGCAGGATTTGAGATAATTGAGCTCAAAGGGAGGTATAAAGTGGCATTCTAGAAATCTTTTTACGGTGTGTTTCAAGTTTCCGAAAACAAATGCGACCTTTCATGATAGCAGAATTTTACGTTTAATAAGAAGCTCTGATAACTGAAACTATTACCCAAAATAACGAAGATGAAAAATCCCAAAACACGTCTTTTTTAGAAAAAGTATTACAATTCTGCTCCTACAAACAAAAGACTGAAAATATAGTTGATCTAAACCCAAAGGCATGTTTTCGAGACAAATTTCTGTTTTTCTCCGTTTTTTTCTACTCCTTCTTCCACTCATTTCACCAGTTGTTCGACGTGCTCAGTTCTCTTGTTCGGGGTCGGAATGACAAATTCTAATATTTTCTGTCCTAATCCGTTTTTTTCACTACACTGTGAGAGAAAACAACTTTTGTTCTGAAAACTACAAAGCAGTACGGTAAAAGCTTCTTCGAAACACCGAAAAAGGGTCCACTGATCTGGAACTCTTGGATCTCAAGAGTTCTGTCTTATTCCAAAAAAAGACTGGTCGTTTTATTTTGGAAGAAAAAAGGTACAGTAGTATTTTTCAAGTACCCCTTCTTCTTTTTTCTCCGTTTTTTTTCTTTTCTCGCAATTCCTATTCCATTCGGTCTTCTTTCAATATCCTCACCAATTTTTTTTCCATTCAGTTTTCCTATCTCCGGAATGTGAATTGAGAAAAAAGGATGAGGAAGAAAGGTTGGAAAAGTGTAGCACTACCTATAAAAAAGGAAGAGGTGTTCATAAATCTCGATCAAGCTTCCCAGCGCTTCCAATTCTCGAAACGGTGTGAA</canonical>
            <polymorphic>AAACCAACCAAAATCACTATAAACAGCGTAACTGAAGGCCACCCTATACTCGCATTTTGAGCTTAATTATTTCCGATTTTATGAGAGATTTCAAAAATATGTTAACTGATAAAATGTTGGTTATATCACGGCATATTAGTTGGCAAATTTCCGTTATTCGCTGCAGGATTTGAGATAATTGAGCTCAAAGGGAGGTATAAAGTGGCATTCTAGAAATCTTTTTACGGTGTGTTTCAAGTTTCCGAAAACAAATGCGACCTTTCATGATAGCAGAATTTTACGTTTAATAAGAAGCTCTGATAACTGAAACTATTACCCAAAATAACGAAGATGAAAAATCCCAAAACACGTCTTTTTTAGAAAAAGTATTACAATTCTGCTCCTACAAACAAAAGACTGAAAATATAGTTGATCTAAACCCAAAGGCATGTTTTCGAGACAAATTTCTGTTTTTCTCCGTTTTTTTCTACTCCTTCTTCCACTCATTTCACCAGTTGTTYGACGTGCTCAGTTCTCTTGTTCGGGGTCGGAATGACAAATTCTAATATTTTCTGTCCTAATCCGTTTTTTTCACTACACTGTGAGAGAAAACAACTTTTGTTCTGAAAACTACAAAGCAGTACGGTAAAAGCTTCTTCGAAACACCGAAAAAGGGTCCACTGATCTGGAACTCTTGGATCTCAAGAGTTCTGTCTTATTCCAAAAAAAGACTGGTCGTTTTATTTTGGAAGAAAAAAGGTACAGTAGTATTTTTCAAGTACCCCTTCTTCTTTTTTCTCCGTTTTTTTTCTTTTCTCGCAATTCCTATTCCATTCGGTCTTCTTTCAATATCCTCACCAATTTTTTTTCCATTCAGTTTTCCTATCTCCGGAATGTGAATTGAGAAAAAAGGATGAGGAAGAAAGGTTGGAAAAGTGTAGCACTACCTATAAAAAAGGAAGAGGTGTTCATAAATCTCGATCAAGCTTCCCAGCGCTTCCAATTCTCGAAACGGTGTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>435 320 138 65 29 13</canonical_bands>
                <polymorphic_bands>435 320 203 29 13</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCCTACAAACAAAAGACTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTACCGTACTGCTTTGTAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCCTACAAACAAAAGACTGAAAATATAGTTGATCTAAACCCAAAGGCATGTTTTCGAGACAAATTTCTGTTTTTCTCCGTTTTTTTCTACTCCTTCTTCCACTCATTTCACCAGTTGTTCGACGTGCTCAGTTCTCTTGTTCGGGGTCGGAATGACAAATTCTAATATTTTCTGTCCTAATCCGTTTTTTTCACTACACTGTGAGAGAAAACAACTTTTGTTCTGAAAACTACAAAGCAGTACGGTAAA</canonical_amplicon>
		<polymorphic_amplicon>CTCCTACAAACAAAAGACTGAAAATATAGTTGATCTAAACCCAAAGGCATGTTTTCGAGACAAATTTCTGTTTTTCTCCGTTTTTTTCTACTCCTTCTTCCACTCATTTCACCAGTTGTTYGACGTGCTCAGTTCTCTTGTTCGGGGTCGGAATGACAAATTCTAATATTTTCTGTCCTAATCCGTTTTTTTCACTACACTGTGAGAGAAAACAACTTTTGTTCTGAAAACTACAAAGCAGTACGGTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18716</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>455847</contig_pos>
        <strand>+</strand>
        <context>GTAAAAGCTT[C/T]TTCGAAACAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGAAAACAACTTTTGTTCTGAAAACTACAAAGCAGTACGGTAAAAGCTT</left_flank>
        <right_flank>TTCGAAACACCGAAAAAGGGTCCACTGATCTGGAACTCTTGGATCTCAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGTTGGCAAATTTCCGTTATTCGCTGCAGGATTTGAGATAATTGAGCTCAAAGGGAGGTATAAAGTGGCATTCTAGAAATCTTTTTACGGTGTGTTTCAAGTTTCCGAAAACAAATGCGACCTTTCATGATAGCAGAATTTTACGTTTAATAAGAAGCTCTGATAACTGAAACTATTACCCAAAATAACGAAGATGAAAAATCCCAAAACACGTCTTTTTTAGAAAAAGTATTACAATTCTGCTCCTACAAACAAAAGACTGAAAATATAGTTGATCTAAACCCAAAGGCATGTTTTCGAGACAAATTTCTGTTTTTCTCCGTTTTTTTCTACTCCTTCTTCCACTCATTTCACCAGTTGTTCGACGTGCTCAGTTCTCTTGTTCGGGGTCGGAATGACAAATTCTAATATTTTCTGTCCTAATCCGTTTTTTTCACTACACTGTGAGAGAAAACAACTTTTGTTCTGAAAACTACAAAGCAGTACGGTAAAAGCTTCTTCGAAACACCGAAAAAGGGTCCACTGATCTGGAACTCTTGGATCTCAAGAGTTCTGTCTTATTCCAAAAAAAGACTGGTCGTTTTATTTTGGAAGAAAAAAGGTACAGTAGTATTTTTCAAGTACCCCTTCTTCTTTTTTCTCCGTTTTTTTTCTTTTCTCGCAATTCCTATTCCATTCGGTCTTCTTTCAATATCCTCACCAATTTTTTTTCCATTCAGTTTTCCTATCTCCGGAATGTGAATTGAGAAAAAAGGATGAGGAAGAAAGGTTGGAAAAGTGTAGCACTACCTATAAAAAAGGAAGAGGTGTTCATAAATCTCGATCAAGCTTCCCAGCGCTTCCAATTCTCGAAACGGTGTGAAAATGAATTTGAGAGATGAAGATGGGAAATTGGGAGAAGAGTTTCCTTCAATTTTTCTTTATTCGTGGTTCTTATTTTATTACCAAAAAGTGCGATTTTTCCTTGAACTTTGTGACAAGTCCAATTTGCTTAGAAA</canonical>
            <polymorphic>TTAGTTGGCAAATTTCCGTTATTCGCTGCAGGATTTGAGATAATTGAGCTCAAAGGGAGGTATAAAGTGGCATTCTAGAAATCTTTTTACGGTGTGTTTCAAGTTTCCGAAAACAAATGCGACCTTTCATGATAGCAGAATTTTACGTTTAATAAGAAGCTCTGATAACTGAAACTATTACCCAAAATAACGAAGATGAAAAATCCCAAAACACGTCTTTTTTAGAAAAAGTATTACAATTCTGCTCCTACAAACAAAAGACTGAAAATATAGTTGATCTAAACCCAAAGGCATGTTTTCGAGACAAATTTCTGTTTTTCTCCGTTTTTTTCTACTCCTTCTTCCACTCATTTCACCAGTTGTTCGACGTGCTCAGTTCTCTTGTTCGGGGTCGGAATGACAAATTCTAATATTTTCTGTCCTAATCCGTTTTTTTCACTACACTGTGAGAGAAAACAACTTTTGTTCTGAAAACTACAAAGCAGTACGGTAAAAGCTTYTTCGAAACACCGAAAAAGGGTCCACTGATCTGGAACTCTTGGATCTCAAGAGTTCTGTCTTATTCCAAAAAAAGACTGGTCGTTTTATTTTGGAAGAAAAAAGGTACAGTAGTATTTTTCAAGTACCCCTTCTTCTTTTTTCTCCGTTTTTTTTCTTTTCTCGCAATTCCTATTCCATTCGGTCTTCTTTCAATATCCTCACCAATTTTTTTTCCATTCAGTTTTCCTATCTCCGGAATGTGAATTGAGAAAAAAGGATGAGGAAGAAAGGTTGGAAAAGTGTAGCACTACCTATAAAAAAGGAAGAGGTGTTCATAAATCTCGATCAAGCTTCCCAGCGCTTCCAATTCTCGAAACGGTGTGAAAATGAATTTGAGAGATGAAGATGGGAAATTGGGAGAAGAGTTTCCTTCAATTTTTCTTTATTCGTGGTTCTTATTTTATTACCAAAAAGTGCGATTTTTCCTTGAACTTTGTGACAAGTCCAATTTGCTTAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTACTCCTTCTTCCACTC</pcr_primer_p1>
		<pcr_primer_p2>TTTGGAATAAGACAGAACTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTACTCCTTCTTCCACTCATTTCACCAGTTGTTCGACGTGCTCAGTTCTCTTGTTCGGGGTCGGAATGACAAATTCTAATATTTTCTGTCCTAATCCGTTTTTTTCACTACACTGTGAGAGAAAACAACTTTTGTTCTGAAAACTACAAAGCAGTACGGTAAAAGCTTCTTCGAAACACCGAAAAAGGGTCCACTGATCTGGAACTCTTGGATCTCAAGAGTTCTGTCTTATTCCAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTACTCCTTCTTCCACTCATTTCACCAGTTGTTCGACGTGCTCAGTTCTCTTGTTCGGGGTCGGAATGACAAATTCTAATATTTTCTGTCCTAATCCGTTTTTTTCACTACACTGTGAGAGAAAACAACTTTTGTTCTGAAAACTACAAAGCAGTACGGTAAAAGCTTYTTCGAAACACCGAAAAAGGGTCCACTGATCTGGAACTCTTGGATCTCAAGAGTTCTGTCTTATTCCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18717</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>456058</contig_pos>
        <strand>+</strand>
        <context>ACCAATTTTT[A/T]TTCCATTCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGCAATTCCTATTCCATTCGGTCTTCTTTCAATATCCTCACCAATTTTT</left_flank>
        <right_flank>TTCCATTCAGTTTTCCTATCTCCGGAATGTGAATTGAGAAAAAAGGATGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACGTCTTTTTTAGAAAAAGTATTACAATTCTGCTCCTACAAACAAAAGACTGAAAATATAGTTGATCTAAACCCAAAGGCATGTTTTCGAGACAAATTTCTGTTTTTCTCCGTTTTTTTCTACTCCTTCTTCCACTCATTTCACCAGTTGTTCGACGTGCTCAGTTCTCTTGTTCGGGGTCGGAATGACAAATTCTAATATTTTCTGTCCTAATCCGTTTTTTTCACTACACTGTGAGAGAAAACAACTTTTGTTCTGAAAACTACAAAGCAGTACGGTAAAAGCTTCTTCGAAACACCGAAAAAGGGTCCACTGATCTGGAACTCTTGGATCTCAAGAGTTCTGTCTTATTCCAAAAAAAGACTGGTCGTTTTATTTTGGAAGAAAAAAGGTACAGTAGTATTTTTCAAGTACCCCTTCTTCTTTTTTCTCCGTTTTTTTTCTTTTCTCGCAATTCCTATTCCATTCGGTCTTCTTTCAATATCCTCACCAATTTTTTTTCCATTCAGTTTTCCTATCTCCGGAATGTGAATTGAGAAAAAAGGATGAGGAAGAAAGGTTGGAAAAGTGTAGCACTACCTATAAAAAAGGAAGAGGTGTTCATAAATCTCGATCAAGCTTCCCAGCGCTTCCAATTCTCGAAACGGTGTGAAAATGAATTTGAGAGATGAAGATGGGAAATTGGGAGAAGAGTTTCCTTCAATTTTTCTTTATTCGTGGTTCTTATTTTATTACCAAAAAGTGCGATTTTTCCTTGAACTTTGTGACAAGTCCAATTTGCTTAGAAAGTAATGAGCCTTATTTATTGAGCCACTTTGTCCGGAAAACTTGAGTACTACGTATCCCGAGGTATTTGATGACAATTGAAATGTGATGTATAGAATTTCAGTGACATGAGCTGAAATAAGAAAAGTTCAGATTCGATTCCAATTGTCTTAAAAGATTTTGATTAATTCAAAATAAATGCAATTTTTTTGAGTTCTAGGAAATGAGGCGAAA</canonical>
            <polymorphic>CACGTCTTTTTTAGAAAAAGTATTACAATTCTGCTCCTACAAACAAAAGACTGAAAATATAGTTGATCTAAACCCAAAGGCATGTTTTCGAGACAAATTTCTGTTTTTCTCCGTTTTTTTCTACTCCTTCTTCCACTCATTTCACCAGTTGTTCGACGTGCTCAGTTCTCTTGTTCGGGGTCGGAATGACAAATTCTAATATTTTCTGTCCTAATCCGTTTTTTTCACTACACTGTGAGAGAAAACAACTTTTGTTCTGAAAACTACAAAGCAGTACGGTAAAAGCTTCTTCGAAACACCGAAAAAGGGTCCACTGATCTGGAACTCTTGGATCTCAAGAGTTCTGTCTTATTCCAAAAAAAGACTGGTCGTTTTATTTTGGAAGAAAAAAGGTACAGTAGTATTTTTCAAGTACCCCTTCTTCTTTTTTCTCCGTTTTTTTTCTTTTCTCGCAATTCCTATTCCATTCGGTCTTCTTTCAATATCCTCACCAATTTTTWTTCCATTCAGTTTTCCTATCTCCGGAATGTGAATTGAGAAAAAAGGATGAGGAAGAAAGGTTGGAAAAGTGTAGCACTACCTATAAAAAAGGAAGAGGTGTTCATAAATCTCGATCAAGCTTCCCAGCGCTTCCAATTCTCGAAACGGTGTGAAAATGAATTTGAGAGATGAAGATGGGAAATTGGGAGAAGAGTTTCCTTCAATTTTTCTTTATTCGTGGTTCTTATTTTATTACCAAAAAGTGCGATTTTTCCTTGAACTTTGTGACAAGTCCAATTTGCTTAGAAAGTAATGAGCCTTATTTATTGAGCCACTTTGTCCGGAAAACTTGAGTACTACGTATCCCGAGGTATTTGATGACAATTGAAATGTGATGTATAGAATTTCAGTGACATGAGCTGAAATAAGAAAAGTTCAGATTCGATTCCAATTGTCTTAAAAGATTTTGATTAATTCAAAATAAATGCAATTTTTTTGAGTTCTAGGAAATGAGGCGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGACTGGTCGTTTTATTTTG</pcr_primer_p1>
		<pcr_primer_p2>ATTTATGAACACCTCTTCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGACTGGTCGTTTTATTTTGGAAGAAAAAAGGTACAGTAGTATTTTTCAAGTACCCCTTCTTCTTTTTTCTCCGTTTTTTTTCTTTTCTCGCAATTCCTATTCCATTCGGTCTTCTTTCAATATCCTCACCAATTTTTTTTCCATTCAGTTTTCCTATCTCCGGAATGTGAATTGAGAAAAAAGGATGAGGAAGAAAGGTTGGAAAAGTGTAGCACTACCTATAAAAAAGGAAGAGGTGTTCATAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAGACTGGTCGTTTTATTTTGGAAGAAAAAAGGTACAGTAGTATTTTTCAAGTACCCCTTCTTCTTTTTTCTCCGTTTTTTTTCTTTTCTCGCAATTCCTATTCCATTCGGTCTTCTTTCAATATCCTCACCAATTTTTWTTCCATTCAGTTTTCCTATCTCCGGAATGTGAATTGAGAAAAAAGGATGAGGAAGAAAGGTTGGAAAAGTGTAGCACTACCTATAAAAAAGGAAGAGGTGTTCATAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18718</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>470848</contig_pos>
        <strand>+</strand>
        <context>TAATTCAGTG[A/C]TTGAGTGTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATGCATGAAAACAATGAAAAATACGGGATGCATTTCGGATAATTCAGTG</left_flank>
        <right_flank>TTGAGTGTTGTTTGTGGAAGAGAGAGTACAAAAAACACCGAGATCATTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTATGATTTCTTTCACCTGATTGTAAGAGCACATGAAATACAAAAGCGCCGTTGAGAGAAAAACCAGTAAGAGAAGTGATATAATGGTGGACATCAGAACGCACATTTTAATAGTTGAGAACATTTCCCCGGCTGCCTGAAAATTTTTAGATTACTGTAGTTTATAATTGTTTTTTTCTTTTGTTCTGTTTTCTTGTTGACAAATCAAACAAAAAACACAAACACAACAAGTGTACACACAACGCTAAAAAATTAGCTCTTTTCTTAAGGTGGACAGAATTAGGCCCAAATTTCGCATCGCTAAGACATTGTTTGCCAATGTTTATGTTTTTGTTGGAATTCCCCCATCTAAATATGGATATTCCCCCCATCTAAATATGGATGTCCGGGTTAAGAGGTTATGCATATTATTTTTTCAAAGTATCATATTCTTCAAAGTGCAGAGCAAATGCATGAAAACAATGAAAAATACGGGATGCATTTCGGATAATTCAGTGATTGAGTGTTGTTTGTGGAAGAGAGAGTACAAAAAACACCGAGATCATTGAAATATTTCGTATATGATTTTTGGGAGAAATTTTATTTTTTACCTGATAACGAGACGTTCAACGTCGTATTGGCCCATGATAACTCATGGACTCATTACAGCTTTTTTACATCTTCTAAAAACATTTTTAAATAGAATATGATATCATATGTGAGTGTTTTTTCTTGATTTCGGACCACTTTGATCATTTTTGAGAGTCTGGAGCTCGGCTATAAAATTTCCAATGACTTTTAAAATTTCAGAAGATGTAAAACAGATCTAGACTGAAAATTGTGCTTTTACTTAATTTTCCGATAACTTCTAATTTTCTAGATATGTGCCGATTTCTGAAAAACGACTAGAAGGAGTATCTTCCATAAATCGGCAAATAACTGAAAAACTAGGATTTTTCAAAAATTCTGTGAATGCAAAATTTACAATCTACCTCTGTTATAAACCCTCTAAAGTTCTG</canonical>
            <polymorphic>TTGTATGATTTCTTTCACCTGATTGTAAGAGCACATGAAATACAAAAGCGCCGTTGAGAGAAAAACCAGTAAGAGAAGTGATATAATGGTGGACATCAGAACGCACATTTTAATAGTTGAGAACATTTCCCCGGCTGCCTGAAAATTTTTAGATTACTGTAGTTTATAATTGTTTTTTTCTTTTGTTCTGTTTTCTTGTTGACAAATCAAACAAAAAACACAAACACAACAAGTGTACACACAACGCTAAAAAATTAGCTCTTTTCTTAAGGTGGACAGAATTAGGCCCAAATTTCGCATCGCTAAGACATTGTTTGCCAATGTTTATGTTTTTGTTGGAATTCCCCCATCTAAATATGGATATTCCCCCCATCTAAATATGGATGTCCGGGTTAAGAGGTTATGCATATTATTTTTTCAAAGTATCATATTCTTCAAAGTGCAGAGCAAATGCATGAAAACAATGAAAAATACGGGATGCATTTCGGATAATTCAGTGMTTGAGTGTTGTTTGTGGAAGAGAGAGTACAAAAAACACCGAGATCATTGAAATATTTCGTATATGATTTTTGGGAGAAATTTTATTTTTTACCTGATAACGAGACGTTCAACGTCGTATTGGCCCATGATAACTCATGGACTCATTACAGCTTTTTTACATCTTCTAAAAACATTTTTAAATAGAATATGATATCATATGTGAGTGTTTTTTCTTGATTTCGGACCACTTTGATCATTTTTGAGAGTCTGGAGCTCGGCTATAAAATTTCCAATGACTTTTAAAATTTCAGAAGATGTAAAACAGATCTAGACTGAAAATTGTGCTTTTACTTAATTTTCCGATAACTTCTAATTTTCTAGATATGTGCCGATTTCTGAAAAACGACTAGAAGGAGTATCTTCCATAAATCGGCAAATAACTGAAAAACTAGGATTTTTCAAAAATTCTGTGAATGCAAAATTTACAATCTACCTCTGTTATAAACCCTCTAAAGTTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAATTCCCCCATCTAAATA</pcr_primer_p1>
		<pcr_primer_p2>AAATAAAATTTCTCCCAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAATTCCCCCATCTAAATATGGATATTCCCCCCATCTAAATATGGATGTCCGGGTTAAGAGGTTATGCATATTATTTTTTCAAAGTATCATATTCTTCAAAGTGCAGAGCAAATGCATGAAAACAATGAAAAATACGGGATGCATTTCGGATAATTCAGTGATTGAGTGTTGTTTGTGGAAGAGAGAGTACAAAAAACACCGAGATCATTGAAATATTTCGTATATGATTTTTGGGAGAAATTTTATTT</canonical_amplicon>
		<polymorphic_amplicon>GGAATTCCCCCATCTAAATATGGATATTCCCCCCATCTAAATATGGATGTCCGGGTTAAGAGGTTATGCATATTATTTTTTCAAAGTATCATATTCTTCAAAGTGCAGAGCAAATGCATGAAAACAATGAAAAATACGGGATGCATTTCGGATAATTCAGTGMTTGAGTGTTGTTTGTGGAAGAGAGAGTACAAAAAACACCGAGATCATTGAAATATTTCGTATATGATTTTTGGGAGAAATTTTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18719</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>470711</contig_pos>
        <strand>+</strand>
        <context>AAATATGGAT[A/G]TTCCCCCCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTGCCAATGTTTATGTTTTTGTTGGAATTCCCCCATCTAAATATGGAT</left_flank>
        <right_flank>TTCCCCCCATCTAAATATGGATGTCCGGGTTAAGAGGTTATGCATATTAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGCAAACGAGCGTATCTAAACCGGCGAGAAGCGGGGAAAAAGTCATCGAATTTAGAATCCACTCGGTTTGTTTGCTCAACGTGATTTGATTGGATATTGACTTTTTGACAGTTTTTGCGGATACACGACTCATATTTTGTATGATTTCTTTCACCTGATTGTAAGAGCACATGAAATACAAAAGCGCCGTTGAGAGAAAAACCAGTAAGAGAAGTGATATAATGGTGGACATCAGAACGCACATTTTAATAGTTGAGAACATTTCCCCGGCTGCCTGAAAATTTTTAGATTACTGTAGTTTATAATTGTTTTTTTCTTTTGTTCTGTTTTCTTGTTGACAAATCAAACAAAAAACACAAACACAACAAGTGTACACACAACGCTAAAAAATTAGCTCTTTTCTTAAGGTGGACAGAATTAGGCCCAAATTTCGCATCGCTAAGACATTGTTTGCCAATGTTTATGTTTTTGTTGGAATTCCCCCATCTAAATATGGATATTCCCCCCATCTAAATATGGATGTCCGGGTTAAGAGGTTATGCATATTATTTTTTCAAAGTATCATATTCTTCAAAGTGCAGAGCAAATGCATGAAAACAATGAAAAATACGGGATGCATTTCGGATAATTCAGTGATTGAGTGTTGTTTGTGGAAGAGAGAGTACAAAAAACACCGAGATCATTGAAATATTTCGTATATGATTTTTGGGAGAAATTTTATTTTTTACCTGATAACGAGACGTTCAACGTCGTATTGGCCCATGATAACTCATGGACTCATTACAGCTTTTTTACATCTTCTAAAAACATTTTTAAATAGAATATGATATCATATGTGAGTGTTTTTTCTTGATTTCGGACCACTTTGATCATTTTTGAGAGTCTGGAGCTCGGCTATAAAATTTCCAATGACTTTTAAAATTTCAGAAGATGTAAAACAGATCTAGACTGAAAATTGTGCTTTTACTTAATTTTCCGATAACTTCTAATTTTCTAGAT</canonical>
            <polymorphic>GTGCAAACGAGCGTATCTAAACCGGCGAGAAGCGGGGAAAAAGTCATCGAATTTAGAATCCACTCGGTTTGTTTGCTCAACGTGATTTGATTGGATATTGACTTTTTGACAGTTTTTGCGGATACACGACTCATATTTTGTATGATTTCTTTCACCTGATTGTAAGAGCACATGAAATACAAAAGCGCCGTTGAGAGAAAAACCAGTAAGAGAAGTGATATAATGGTGGACATCAGAACGCACATTTTAATAGTTGAGAACATTTCCCCGGCTGCCTGAAAATTTTTAGATTACTGTAGTTTATAATTGTTTTTTTCTTTTGTTCTGTTTTCTTGTTGACAAATCAAACAAAAAACACAAACACAACAAGTGTACACACAACGCTAAAAAATTAGCTCTTTTCTTAAGGTGGACAGAATTAGGCCCAAATTTCGCATCGCTAAGACATTGTTTGCCAATGTTTATGTTTTTGTTGGAATTCCCCCATCTAAATATGGATRTTCCCCCCATCTAAATATGGATGTCCGGGTTAAGAGGTTATGCATATTATTTTTTCAAAGTATCATATTCTTCAAAGTGCAGAGCAAATGCATGAAAACAATGAAAAATACGGGATGCATTTCGGATAATTCAGTGATTGAGTGTTGTTTGTGGAAGAGAGAGTACAAAAAACACCGAGATCATTGAAATATTTCGTATATGATTTTTGGGAGAAATTTTATTTTTTACCTGATAACGAGACGTTCAACGTCGTATTGGCCCATGATAACTCATGGACTCATTACAGCTTTTTTACATCTTCTAAAAACATTTTTAAATAGAATATGATATCATATGTGAGTGTTTTTTCTTGATTTCGGACCACTTTGATCATTTTTGAGAGTCTGGAGCTCGGCTATAAAATTTCCAATGACTTTTAAAATTTCAGAAGATGTAAAACAGATCTAGACTGAAAATTGTGCTTTTACTTAATTTTCCGATAACTTCTAATTTTCTAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTTGACAAATCAAACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTCTGCACTTTGAAGAATATGAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTGTTGACAAATCAAACAAAAAACACAAACACAACAAGTGTACACACAACGCTAAAAAATTAGCTCTTTTCTTAAGGTGGACAGAATTAGGCCCAAATTTCGCATCGCTAAGACATTGTTTGCCAATGTTTATGTTTTTGTTGGAATTCCCCCATCTAAATATGGATATTCCCCCCATCTAAATATGGATGTCCGGGTTAAGAGGTTATGCATATTATTTTTTCAAAGTATCATATTCTTCAAAGTGCAGAG</canonical_amplicon>
		<polymorphic_amplicon>TTGTTGACAAATCAAACAAAAAACACAAACACAACAAGTGTACACACAACGCTAAAAAATTAGCTCTTTTCTTAAGGTGGACAGAATTAGGCCCAAATTTCGCATCGCTAAGACATTGTTTGCCAATGTTTATGTTTTTGTTGGAATTCCCCCATCTAAATATGGATRTTCCCCCCATCTAAATATGGATGTCCGGGTTAAGAGGTTATGCATATTATTTTTTCAAAGTATCATATTCTTCAAAGTGCAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18720</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>497392</contig_pos>
        <strand></strand>
        <context>CAAAAGCTTA[T/C]ACCACCATGC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTTCCAAGGATTTATAAAAAACAAAAATTAAAAAGGGTTCAAAAGCTTA</left_flank>
        <right_flank>ACCACCATGCTTCCACTTTTTCTTATGACCTACTGATGGCAACACTCGTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCCGTTTCCAATACAAAAGCAGACAAAAATGGGTTTGTCGAAAATCTGCAAAAAGCTGAAAAAGAAGGACATTTCAAGAGTACTGTAATATAAAGTTTTCAAGCTAGATCTGTTTTCTACCCTCCAGAAAAATTTCAAAGTGATCCGAAATTTGTAAGCCAAGCTCGAGTCTCTGGGAAATGGTCAAAGCTGCCGAAATTCAACTAGAAAATAAGTTTTTGTATATCTTATCGACTAGATCCTATTGATTTCTGAAACTGTCCTACTCAATAGCTCAATTTTCGAAAGCACCACATAATATTTCTTAGACTTCTAGTATCAAGACTTTTGTCACCTTCAATGAGGAACAAATAATTCATGAGTCTTCTCACTCTTAAGTCTCGACGACACTTTTTAAAGAGCTGTGAAAAGCATTGAATCCTTTTTTTTGCAAGATATATTATTCCATTTCCAAGGATTTATAAAAAACAAAAATTAAAAAGGGTTCAAAAGCTTATACCACCATGCTTCCACTTTTTCTTATGACCTACTGATGGCAACACTCGTTTCATTCATTCACCTCTTATCATTTGACTTGTTGACACTGGAAAATTCAACCTCACATTCACTTCTCTCATCAACTCATCATCGTCATTTCAGGAATTTCGAGTGAATTCTTTGGAAGCAACACACACACGCCCGAAACTCTCAACGTCTTCGTCTGGTTTGTGCAGTGAGCTGTTAATTTTAACGCTTACGAAACTGGAGCCCCACTACGACCAGTACTACGACCCTTCATACGACAGCCATCTGTATGTAAGTTGTGTTGTTTTAATTTTCAGTATTGTGTTGTGAAACCCTCTAGAAAATTCTACGGTAGGAATCCAGATTCTGACAATCAGTCTTCAGAACGGGCCCAGAAGGGCCCAGCCATAATTTTTTAGGATCAATATTGTTTGACCAATTGAATCAGATATGATAATACTCAATAAGTACTACAGAATGACAAACTCACAAT</canonical>
            <polymorphic>TCTTCCGTTTCCAATACAAAAGCAGACAAAAATGGGTTTGTCGAAAATCTGCAAAAAGCTGAAAAAGAAGGACATTTCAAGAGTACTGTAATATAAAGTTTTCAAGCTAGATCTGTTTTCTACCCTCCAGAAAAATTTCAAAGTGATCCGAAATTTGTAAGCCAAGCTCGAGTCTCTGGGAAATGGTCAAAGCTGCCGAAATTCAACTAGAAAATAAGTTTTTGTATATCTTATCGACTAGATCCTATTGATTTCTGAAACTGTCCTACTCAATAGCTCAATTTTCGAAAGCACCACATAATATTTCTTAGACTTCTAGTATCAAGACTTTTGTCACCTTCAATGAGGAACAAATAATTCATGAGTCTTCTCACTCTTAAGTCTCGACGACACTTTTTAAAGAGCTGTGAAAAGCATTGAATCCTTTTTTTTGCAAGATATATTATTCCATTTCCAAGGATTTATAAAAAACAAAAATTAAAAAGGGTTCAAAAGCTTAYACCACCATGCTTCCACTTTTTCTTATGACCTACTGATGGCAACACTCGTTTCATTCATTCACCTCTTATCATTTGACTTGTTGACACTGGAAAATTCAACCTCACATTCACTTCTCTCATCAACTCATCATCGTCATTTCAGGAATTTCGAGTGAATTCTTTGGAAGCAACACACACACGCCCGAAACTCTCAACGTCTTCGTCTGGTTTGTGCAGTGAGCTGTTAATTTTAACGCTTACGAAACTGGAGCCCCACTACGACCAGTACTACGACCCTTCATACGACAGCCATCTGTATGTAAGTTGTGTTGTTTTAATTTTCAGTATTGTGTTGTGAAACCCTCTAGAAAATTCTACGGTAGGAATCCAGATTCTGACAATCAGTCTTCAGAACGGGCCCAGAAGGGCCCAGCCATAATTTTTTAGGATCAATATTGTTTGACCAATTGAATCAGATATGATAATACTCAATAAGTACTACAGAATGACAAACTCACAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCAATGAGGAACAAATAATTC</pcr_primer_p1>
		<pcr_primer_p2>TGTCAACAAGTCAAATGATAAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTCAATGAGGAACAAATAATTCATGAGTCTTCTCACTCTTAAGTCTCGACGACACTTTTTAAAGAGCTGTGAAAAGCATTGAATCCTTTTTTTTGCAAGATATATTATTCCATTTCCAAGGATTTATAAAAAACAAAAATTAAAAAGGGTTCAAAAGCTTATACCACCATGCTTCCACTTTTTCTTATGACCTACTGATGGCAACACTCGTTTCATTCATTCACCTCTTATCATTTGACTTGTTGACA</canonical_amplicon>
		<polymorphic_amplicon>CTTCAATGAGGAACAAATAATTCATGAGTCTTCTCACTCTTAAGTCTCGACGACACTTTTTAAAGAGCTGTGAAAAGCATTGAATCCTTTTTTTTGCAAGATATATTATTCCATTTCCAAGGATTTATAAAAAACAAAAATTAAAAAGGGTTCAAAAGCTTAYACCACCATGCTTCCACTTTTTCTTATGACCTACTGATGGCAACACTCGTTTCATTCATTCACCTCTTATCATTTGACTTGTTGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18721</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>550114</contig_pos>
        <strand>+</strand>
        <context>ACACACTATT[C/T]AAAATAAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGAATTGGTGTACGATTATGATGTGAAAACTAAACTGGAACACACTATT</left_flank>
        <right_flank>AAAATAAAAGAAAAAATGATTATTTGATGATTTGTGTTTTTTTTTTTGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTATTTTTCGAATGTGCCAAAATATTTATAATGGCACAAATATTAATCCGAATGCATACAACCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAATCAAACTTCATTAAGCCAAGGATGAAACTTTTTTTCTAATTACGACTTTAAAACAGTCTTTGTCAACAGTATCGGCCTCTAGTGTGGATTTTCATTCACTAAGAAGAAAAACCATCTTGAAAAATGATGATTCGCGCTAAAATTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCTCGGCCCGCTTTTAGAAAAATCTCAGCCCGGCCATGGCCCTACACGGCACGGCCGGGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGGTTCAGTGTGTGTTTAAACTACAATTGTTAGACCGGACCCTTTTTTTTCTAAATAAAATTAAGAATTGGTGTACGATTATGATGTGAAAACTAAACTGGAACACACTATTCAAAATAAAAGAAAAAATGATTATTTGATGATTTGTGTTTTTTTTTTTGAATTTTTTAAATTGAAGACGAAACCGATTTTCGAGTTTTGGATCGTGTCTTGGAGAGTTTGACATAAGCTAAGCTGGAAACAATTGGAGATATTTCAATTGATAATTAGGACAGTTGGGCTTGAGGTCACTTTCTTTGGTTGGTTAACAGTGGCCAAAGTGATCGGAACATCACTTGGGACTTTCAAACGCAGGAAGCGACGGATCATTCGACGAGAAAGTGGAGTGTGAAGATAGTAGATGAAATAGTTCATAAGTGCGATGGACTCCATACGAAAATAGAAATAGCCATCACGAAATCCTTCTGGGAACCATTGGTACGCATTCTGAATAACTATTCTCATAATAAGTGAATAGAGCGTTGTCTATTTTGTGTTTTGTATGTCATGTTAGTTTCCCAGAGGAAAAATCCGTCAGACCTAATATGGCCGGCCATAAAAATTTTGGGTATGG</canonical>
            <polymorphic>GTTTTATTTTTCGAATGTGCCAAAATATTTATAATGGCACAAATATTAATCCGAATGCATACAACCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAATCAAACTTCATTAAGCCAAGGATGAAACTTTTTTTCTAATTACGACTTTAAAACAGTCTTTGTCAACAGTATCGGCCTCTAGTGTGGATTTTCATTCACTAAGAAGAAAAACCATCTTGAAAAATGATGATTCGCGCTAAAATTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCTCGGCCCGCTTTTAGAAAAATCTCAGCCCGGCCATGGCCCTACACGGCACGGCCGGGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGGTTCAGTGTGTGTTTAAACTACAATTGTTAGACCGGACCCTTTTTTTTCTAAATAAAATTAAGAATTGGTGTACGATTATGATGTGAAAACTAAACTGGAACACACTATTYAAAATAAAAGAAAAAATGATTATTTGATGATTTGTGTTTTTTTTTTTGAATTTTTTAAATTGAAGACGAAACCGATTTTCGAGTTTTGGATCGTGTCTTGGAGAGTTTGACATAAGCTAAGCTGGAAACAATTGGAGATATTTCAATTGATAATTAGGACAGTTGGGCTTGAGGTCACTTTCTTTGGTTGGTTAACAGTGGCCAAAGTGATCGGAACATCACTTGGGACTTTCAAACGCAGGAAGCGACGGATCATTCGACGAGAAAGTGGAGTGTGAAGATAGTAGATGAAATAGTTCATAAGTGCGATGGACTCCATACGAAAATAGAAATAGCCATCACGAAATCCTTCTGGGAACCATTGGTACGCATTCTGAATAACTATTCTCATAATAAGTGAATAGAGCGTTGTCTATTTTGTGTTTTGTATGTCATGTTAGTTTCCCAGAGGAAAAATCCGTCAGACCTAATATGGCCGGCCATAAAAATTTTGGGTATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCCACAAGTATGGTTCAGT</pcr_primer_p1>
		<pcr_primer_p2>CAGCTTAGCTTATGTCAAACTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCCACAAGTATGGTTCAGTGTGTGTTTAAACTACAATTGTTAGACCGGACCCTTTTTTTTCTAAATAAAATTAAGAATTGGTGTACGATTATGATGTGAAAACTAAACTGGAACACACTATTCAAAATAAAAGAAAAAATGATTATTTGATGATTTGTGTTTTTTTTTTTGAATTTTTTAAATTGAAGACGAAACCGATTTTCGAGTTTTGGATCGTGTCTTGGAGAGTTTGACATAAGCTAAGCTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTCCACAAGTATGGTTCAGTGTGTGTTTAAACTACAATTGTTAGACCGGACCCTTTTTTTTCTAAATAAAATTAAGAATTGGTGTACGATTATGATGTGAAAACTAAACTGGAACACACTATTYAAAATAAAAGAAAAAATGATTATTTGATGATTTGTGTTTTTTTTTTTGAATTTTTTAAATTGAAGACGAAACCGATTTTCGAGTTTTGGATCGTGTCTTGGAGAGTTTGACATAAGCTAAGCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18722</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>550126</contig_pos>
        <strand>+</strand>
        <context>AAATAAAAGA[A/G]AAAATGATTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGATTATGATGTGAAAACTAAACTGGAACACACTATTCAAAATAAAAGA</left_flank>
        <right_flank>AAAATGATTATTTGATGATTTGTGTTTTTTTTTTTGAATTTTTTAAATTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATGTGCCAAAATATTTATAATGGCACAAATATTAATCCGAATGCATACAACCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAATCAAACTTCATTAAGCCAAGGATGAAACTTTTTTTCTAATTACGACTTTAAAACAGTCTTTGTCAACAGTATCGGCCTCTAGTGTGGATTTTCATTCACTAAGAAGAAAAACCATCTTGAAAAATGATGATTCGCGCTAAAATTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCTCGGCCCGCTTTTAGAAAAATCTCAGCCCGGCCATGGCCCTACACGGCACGGCCGGGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGGTTCAGTGTGTGTTTAAACTACAATTGTTAGACCGGACCCTTTTTTTTCTAAATAAAATTAAGAATTGGTGTACGATTATGATGTGAAAACTAAACTGGAACACACTATTCAAAATAAAAGAAAAAATGATTATTTGATGATTTGTGTTTTTTTTTTTGAATTTTTTAAATTGAAGACGAAACCGATTTTCGAGTTTTGGATCGTGTCTTGGAGAGTTTGACATAAGCTAAGCTGGAAACAATTGGAGATATTTCAATTGATAATTAGGACAGTTGGGCTTGAGGTCACTTTCTTTGGTTGGTTAACAGTGGCCAAAGTGATCGGAACATCACTTGGGACTTTCAAACGCAGGAAGCGACGGATCATTCGACGAGAAAGTGGAGTGTGAAGATAGTAGATGAAATAGTTCATAAGTGCGATGGACTCCATACGAAAATAGAAATAGCCATCACGAAATCCTTCTGGGAACCATTGGTACGCATTCTGAATAACTATTCTCATAATAAGTGAATAGAGCGTTGTCTATTTTGTGTTTTGTATGTCATGTTAGTTTCCCAGAGGAAAAATCCGTCAGACCTAATATGGCCGGCCATAAAAATTTTGGGTATGGCAGGTCGCATCA</canonical>
            <polymorphic>GAATGTGCCAAAATATTTATAATGGCACAAATATTAATCCGAATGCATACAACCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAATCAAACTTCATTAAGCCAAGGATGAAACTTTTTTTCTAATTACGACTTTAAAACAGTCTTTGTCAACAGTATCGGCCTCTAGTGTGGATTTTCATTCACTAAGAAGAAAAACCATCTTGAAAAATGATGATTCGCGCTAAAATTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCTCGGCCCGCTTTTAGAAAAATCTCAGCCCGGCCATGGCCCTACACGGCACGGCCGGGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGGTTCAGTGTGTGTTTAAACTACAATTGTTAGACCGGACCCTTTTTTTTCTAAATAAAATTAAGAATTGGTGTACGATTATGATGTGAAAACTAAACTGGAACACACTATTCAAAATAAAAGARAAAATGATTATTTGATGATTTGTGTTTTTTTTTTTGAATTTTTTAAATTGAAGACGAAACCGATTTTCGAGTTTTGGATCGTGTCTTGGAGAGTTTGACATAAGCTAAGCTGGAAACAATTGGAGATATTTCAATTGATAATTAGGACAGTTGGGCTTGAGGTCACTTTCTTTGGTTGGTTAACAGTGGCCAAAGTGATCGGAACATCACTTGGGACTTTCAAACGCAGGAAGCGACGGATCATTCGACGAGAAAGTGGAGTGTGAAGATAGTAGATGAAATAGTTCATAAGTGCGATGGACTCCATACGAAAATAGAAATAGCCATCACGAAATCCTTCTGGGAACCATTGGTACGCATTCTGAATAACTATTCTCATAATAAGTGAATAGAGCGTTGTCTATTTTGTGTTTTGTATGTCATGTTAGTTTCCCAGAGGAAAAATCCGTCAGACCTAATATGGCCGGCCATAAAAATTTTGGGTATGGCAGGTCGCATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAATTGGTGTACGATTATGATG</pcr_primer_p1>
		<pcr_primer_p2>ACTGTTAACCAACCAAAGAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGAATTGGTGTACGATTATGATGTGAAAACTAAACTGGAACACACTATTCAAAATAAAAGAAAAAATGATTATTTGATGATTTGTGTTTTTTTTTTTGAATTTTTTAAATTGAAGACGAAACCGATTTTCGAGTTTTGGATCGTGTCTTGGAGAGTTTGACATAAGCTAAGCTGGAAACAATTGGAGATATTTCAATTGATAATTAGGACAGTTGGGCTTGAGGTCACTTTCTTTGGTTGGTTAACAGT</canonical_amplicon>
		<polymorphic_amplicon>AGAATTGGTGTACGATTATGATGTGAAAACTAAACTGGAACACACTATTCAAAATAAAAGARAAAATGATTATTTGATGATTTGTGTTTTTTTTTTTGAATTTTTTAAATTGAAGACGAAACCGATTTTCGAGTTTTGGATCGTGTCTTGGAGAGTTTGACATAAGCTAAGCTGGAAACAATTGGAGATATTTCAATTGATAATTAGGACAGTTGGGCTTGAGGTCACTTTCTTTGGTTGGTTAACAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18724</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>557181</contig_pos>
        <strand>+</strand>
        <context>AGTTTTTGAA[A/G]CCACAAGAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCGGAGCCAAGTTTTGGATAGCTAATCAAAGGATACTGTAAGTTTTTGAA</left_flank>
        <right_flank>CCACAAGAGCATAGGGAAAAGAGAACGAAGTTTGGCGGCAAACTACCGGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGTGAAAAAAATAAAGTCCCGTTTATGAGCTTGAAATACAGTACTAAAAGTAACTCGCTGTTTTTACGATTTTTCCACGTGGCCAGGAGCATGATGACATCGAAAGAAAGGCAGCAGAGTTGGAATGCAAAAATACACCACAAAACAATCTGATTTACAATGGACATCTCTTGAAAACTGATATTTCTATCCGATTCTCGAGAGAAAAAATCCATTGAGTTTCCAGAGATTTTGGAGGGTGCTACTCCATCTGCTCAATCCAGGAAGAAATGGCAGAAGTGAATATTGGGTCCGCCTTCACGGGATCGCGTGTAAACCGTTATCGGATTGGAAATTGGAGGAAGGAGTGGGTCTGCCTCATAAAAAGTATAAGGAAAAAAACATTTATTAGGTGTATAATTTCTCTTCTCCAGAAATTTAATTAAAACCAGGTATACGGTAGTATGGGGCGGAGCCAAGTTTTGGATAGCTAATCAAAGGATACTGTAAGTTTTTGAAACCACAAGAGCATAGGGAAAAGAGAACGAAGTTTGGCGGCAAACTACCGGAATAGTTTGATAGAGAAAACAACAACGTAATAGTTGATTTCTAGAGAGCAATCAGCAATCATTAGTTGATAAACATCCAGATAGGAAAACATAACTCTAAAAATCATTGGTGGCCTAAATCAGCTGTTCAAAGAGAGGACGGAAAATAAAGTATTCTTCAAAGTTGTGTTTATGTTTACCATTGAATTTATCCGAAAATTTAAAAGTGGTTCGTTGAAATGAGTTTTTTTAGTGCGTAACTTACAAGTGGAAACGGTTGGAACTTATGAGTTTCATTTTTGCATACTTTTAGTAATAACACCATTTTTGAAATTTTTGAAATGCTTGATTTTTGAGAGGAGCACTGTAGTAAATTTGAAAAATTGGATTCTATTATCCTTGTCAGAGAAAAAAAGGTCGAGTCGAAGTGTATGCGATGTTTGTAAACAAATATCTGCAAGCGTAAACAACC</canonical>
            <polymorphic>ACGTGAAAAAAATAAAGTCCCGTTTATGAGCTTGAAATACAGTACTAAAAGTAACTCGCTGTTTTTACGATTTTTCCACGTGGCCAGGAGCATGATGACATCGAAAGAAAGGCAGCAGAGTTGGAATGCAAAAATACACCACAAAACAATCTGATTTACAATGGACATCTCTTGAAAACTGATATTTCTATCCGATTCTCGAGAGAAAAAATCCATTGAGTTTCCAGAGATTTTGGAGGGTGCTACTCCATCTGCTCAATCCAGGAAGAAATGGCAGAAGTGAATATTGGGTCCGCCTTCACGGGATCGCGTGTAAACCGTTATCGGATTGGAAATTGGAGGAAGGAGTGGGTCTGCCTCATAAAAAGTATAAGGAAAAAAACATTTATTAGGTGTATAATTTCTCTTCTCCAGAAATTTAATTAAAACCAGGTATACGGTAGTATGGGGCGGAGCCAAGTTTTGGATAGCTAATCAAAGGATACTGTAAGTTTTTGAARCCACAAGAGCATAGGGAAAAGAGAACGAAGTTTGGCGGCAAACTACCGGAATAGTTTGATAGAGAAAACAACAACGTAATAGTTGATTTCTAGAGAGCAATCAGCAATCATTAGTTGATAAACATCCAGATAGGAAAACATAACTCTAAAAATCATTGGTGGCCTAAATCAGCTGTTCAAAGAGAGGACGGAAAATAAAGTATTCTTCAAAGTTGTGTTTATGTTTACCATTGAATTTATCCGAAAATTTAAAAGTGGTTCGTTGAAATGAGTTTTTTTAGTGCGTAACTTACAAGTGGAAACGGTTGGAACTTATGAGTTTCATTTTTGCATACTTTTAGTAATAACACCATTTTTGAAATTTTTGAAATGCTTGATTTTTGAGAGGAGCACTGTAGTAAATTTGAAAAATTGGATTCTATTATCCTTGTCAGAGAAAAAAAGGTCGAGTCGAAGTGTATGCGATGTTTGTAAACAAATATCTGCAAGCGTAAACAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAATTAAAACCAGGTATACGGTAG</pcr_primer_p1>
		<pcr_primer_p2>CCACCAATGATTTTTAGAGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTAATTAAAACCAGGTATACGGTAGTATGGGGCGGAGCCAAGTTTTGGATAGCTAATCAAAGGATACTGTAAGTTTTTGAAACCACAAGAGCATAGGGAAAAGAGAACGAAGTTTGGCGGCAAACTACCGGAATAGTTTGATAGAGAAAACAACAACGTAATAGTTGATTTCTAGAGAGCAATCAGCAATCATTAGTTGATAAACATCCAGATAGGAAAACATAACTCTAAAAATCATTGGTGG</canonical_amplicon>
		<polymorphic_amplicon>TTAATTAAAACCAGGTATACGGTAGTATGGGGCGGAGCCAAGTTTTGGATAGCTAATCAAAGGATACTGTAAGTTTTTGAARCCACAAGAGCATAGGGAAAAGAGAACGAAGTTTGGCGGCAAACTACCGGAATAGTTTGATAGAGAAAACAACAACGTAATAGTTGATTTCTAGAGAGCAATCAGCAATCATTAGTTGATAAACATCCAGATAGGAAAACATAACTCTAAAAATCATTGGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18725</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>557099</contig_pos>
        <strand>+</strand>
        <context>TYTCCAGAAA[C/T]TTAATTAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTATAAGGAAAAAAACATTTATTAGGTGTATAATTTCTCTTCTCCAGAAA</left_flank>
        <right_flank>TTAATTAAAACCAGGTATACGGTAGTATGGGGCGGAGCCAAGTTTTGGAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATATTCCGATCAGAATTTCCTAGATTTTCGGAGTTCCGAATTCTGTTCCATACATCCCTGGGACCTGAGAAAGAGTGAAGACGTGAAAAAAATAAAGTCCCGTTTATGAGCTTGAAATACAGTACTAAAAGTAACTCGCTGTTTTTACGATTTTTCCACGTGGCCAGGAGCATGATGACATCGAAAGAAAGGCAGCAGAGTTGGAATGCAAAAATACACCACAAAACAATCTGATTTACAATGGACATCTCTTGAAAACTGATATTTCTATCCGATTCTCGAGAGAAAAAATCCATTGAGTTTCCAGAGATTTTGGAGGGTGCTACTCCATCTGCTCAATCCAGGAAGAAATGGCAGAAGTGAATATTGGGTCCGCCTTCACGGGATCGCGTGTAAACCGTTATCGGATTGGAAATTGGAGGAAGGAGTGGGTCTGCCTCATAAAAAGTATAAGGAAAAAAACATTTATTAGGTGTATAATTTCTCTTCTCCAGAAATTTAATTAAAACCAGGTATACGGTAGTATGGGGCGGAGCCAAGTTTTGGATAGCTAATCAAAGGATACTGTAAGTTTTTGAAACCACAAGAGCATAGGGAAAAGAGAACGAAGTTTGGCGGCAAACTACCGGAATAGTTTGATAGAGAAAACAACAACGTAATAGTTGATTTCTAGAGAGCAATCAGCAATCATTAGTTGATAAACATCCAGATAGGAAAACATAACTCTAAAAATCATTGGTGGCCTAAATCAGCTGTTCAAAGAGAGGACGGAAAATAAAGTATTCTTCAAAGTTGTGTTTATGTTTACCATTGAATTTATCCGAAAATTTAAAAGTGGTTCGTTGAAATGAGTTTTTTTAGTGCGTAACTTACAAGTGGAAACGGTTGGAACTTATGAGTTTCATTTTTGCATACTTTTAGTAATAACACCATTTTTGAAATTTTTGAAATGCTTGATTTTTGAGAGGAGCACTGTAGTAAATTTGAAAAATTGGATT</canonical>
            <polymorphic>GAATATTCCGATCAGAATTTCCTAGATTTTCGGAGTTCCGAATTCTGTTCCATACATCCCTGGGACCTGAGAAAGAGTGAAGACGTGAAAAAAATAAAGTCCCGTTTATGAGCTTGAAATACAGTACTAAAAGTAACTCGCTGTTTTTACGATTTTTCCACGTGGCCAGGAGCATGATGACATCGAAAGAAAGGCAGCAGAGTTGGAATGCAAAAATACACCACAAAACAATCTGATTTACAATGGACATCTCTTGAAAACTGATATTTCTATCCGATTCTCGAGAGAAAAAATCCATTGAGTTTCCAGAGATTTTGGAGGGTGCTACTCCATCTGCTCAATCCAGGAAGAAATGGCAGAAGTGAATATTGGGTCCGCCTTCACGGGATCGCGTGTAAACCGTTATCGGATTGGAAATTGGAGGAAGGAGTGGGTCTGCCTCATAAAAAGTATAAGGAAAAAAACATTTATTAGGTGTATAATTTCTCTTCTCCAGAAAYTTAATTAAAACCAGGTATACGGTAGTATGGGGCGGAGCCAAGTTTTGGATAGCTAATCAAAGGATACTGTAAGTTTTTGAAACCACAAGAGCATAGGGAAAAGAGAACGAAGTTTGGCGGCAAACTACCGGAATAGTTTGATAGAGAAAACAACAACGTAATAGTTGATTTCTAGAGAGCAATCAGCAATCATTAGTTGATAAACATCCAGATAGGAAAACATAACTCTAAAAATCATTGGTGGCCTAAATCAGCTGTTCAAAGAGAGGACGGAAAATAAAGTATTCTTCAAAGTTGTGTTTATGTTTACCATTGAATTTATCCGAAAATTTAAAAGTGGTTCGTTGAAATGAGTTTTTTTAGTGCGTAACTTACAAGTGGAAACGGTTGGAACTTATGAGTTTCATTTTTGCATACTTTTAGTAATAACACCATTTTTGAAATTTTTGAAATGCTTGATTTTTGAGAGGAGCACTGTAGTAAATTTGAAAAATTGGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>457 318 114 41 25 18 15 12</canonical_bands>
                <polymorphic_bands>775 114 41 25 18 15 12</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>375 313 114 65 41 25 17 15 12 9 9 5</canonical_bands>
                <polymorphic_bands>375 313 114 65 41 25 22 15 12 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTCTGCCTCATAAAAAGTATAA</pcr_primer_p1>
		<pcr_primer_p2>TCAACTATTACGTTGTTGTTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>GGTCTGCCTCATAAAAAGTATAAGGAAAAAAACATTTATTAGGTGTATAATTTCTCTTCTCCAGAAATTTAATTAAAACCAGGTATACGGTAGTATGGGGCGGAGCCAAGTTTTGGATAGCTAATCAAAGGATACTGTAAGTTTTTGAAACCACAAGAGCATAGGGAAAAGAGAACGAAGTTTGGCGGCAAACTACCGGAATAGTTTGATAGAGAAAACAACAACGTAATAGTTGA</canonical_amplicon>
		<polymorphic_amplicon>GGTCTGCCTCATAAAAAGTATAAGGAAAAAAACATTTATTAGGTGTATAATTTCTCTTCTCCAGAAAYTTAATTAAAACCAGGTATACGGTAGTATGGGGCGGAGCCAAGTTTTGGATAGCTAATCAAAGGATACTGTAAGTTTTTGAAACCACAAGAGCATAGGGAAAAGAGAACGAAGTTTGGCGGCAAACTACCGGAATAGTTTGATAGAGAAAACAACAACGTAATAGTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18726</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>557090</contig_pos>
        <strand>+</strand>
        <context>AATTTCTCTT[C/T]TCCAGAAAYT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATAAAAAGTATAAGGAAAAAAACATTTATTAGGTGTATAATTTCTCTT</left_flank>
        <right_flank>TCCAGAAATTTAATTAAAACCAGGTATACGGTAGTATGGGGCGGAGCCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCTTCGGGAATATTCCGATCAGAATTTCCTAGATTTTCGGAGTTCCGAATTCTGTTCCATACATCCCTGGGACCTGAGAAAGAGTGAAGACGTGAAAAAAATAAAGTCCCGTTTATGAGCTTGAAATACAGTACTAAAAGTAACTCGCTGTTTTTACGATTTTTCCACGTGGCCAGGAGCATGATGACATCGAAAGAAAGGCAGCAGAGTTGGAATGCAAAAATACACCACAAAACAATCTGATTTACAATGGACATCTCTTGAAAACTGATATTTCTATCCGATTCTCGAGAGAAAAAATCCATTGAGTTTCCAGAGATTTTGGAGGGTGCTACTCCATCTGCTCAATCCAGGAAGAAATGGCAGAAGTGAATATTGGGTCCGCCTTCACGGGATCGCGTGTAAACCGTTATCGGATTGGAAATTGGAGGAAGGAGTGGGTCTGCCTCATAAAAAGTATAAGGAAAAAAACATTTATTAGGTGTATAATTTCTCTTCTCCAGAAATTTAATTAAAACCAGGTATACGGTAGTATGGGGCGGAGCCAAGTTTTGGATAGCTAATCAAAGGATACTGTAAGTTTTTGAAACCACAAGAGCATAGGGAAAAGAGAACGAAGTTTGGCGGCAAACTACCGGAATAGTTTGATAGAGAAAACAACAACGTAATAGTTGATTTCTAGAGAGCAATCAGCAATCATTAGTTGATAAACATCCAGATAGGAAAACATAACTCTAAAAATCATTGGTGGCCTAAATCAGCTGTTCAAAGAGAGGACGGAAAATAAAGTATTCTTCAAAGTTGTGTTTATGTTTACCATTGAATTTATCCGAAAATTTAAAAGTGGTTCGTTGAAATGAGTTTTTTTAGTGCGTAACTTACAAGTGGAAACGGTTGGAACTTATGAGTTTCATTTTTGCATACTTTTAGTAATAACACCATTTTTGAAATTTTTGAAATGCTTGATTTTTGAGAGGAGCACTGTAGTAAATTTGAAA</canonical>
            <polymorphic>AATCTTCGGGAATATTCCGATCAGAATTTCCTAGATTTTCGGAGTTCCGAATTCTGTTCCATACATCCCTGGGACCTGAGAAAGAGTGAAGACGTGAAAAAAATAAAGTCCCGTTTATGAGCTTGAAATACAGTACTAAAAGTAACTCGCTGTTTTTACGATTTTTCCACGTGGCCAGGAGCATGATGACATCGAAAGAAAGGCAGCAGAGTTGGAATGCAAAAATACACCACAAAACAATCTGATTTACAATGGACATCTCTTGAAAACTGATATTTCTATCCGATTCTCGAGAGAAAAAATCCATTGAGTTTCCAGAGATTTTGGAGGGTGCTACTCCATCTGCTCAATCCAGGAAGAAATGGCAGAAGTGAATATTGGGTCCGCCTTCACGGGATCGCGTGTAAACCGTTATCGGATTGGAAATTGGAGGAAGGAGTGGGTCTGCCTCATAAAAAGTATAAGGAAAAAAACATTTATTAGGTGTATAATTTCTCTTYTCCAGAAATTTAATTAAAACCAGGTATACGGTAGTATGGGGCGGAGCCAAGTTTTGGATAGCTAATCAAAGGATACTGTAAGTTTTTGAAACCACAAGAGCATAGGGAAAAGAGAACGAAGTTTGGCGGCAAACTACCGGAATAGTTTGATAGAGAAAACAACAACGTAATAGTTGATTTCTAGAGAGCAATCAGCAATCATTAGTTGATAAACATCCAGATAGGAAAACATAACTCTAAAAATCATTGGTGGCCTAAATCAGCTGTTCAAAGAGAGGACGGAAAATAAAGTATTCTTCAAAGTTGTGTTTATGTTTACCATTGAATTTATCCGAAAATTTAAAAGTGGTTCGTTGAAATGAGTTTTTTTAGTGCGTAACTTACAAGTGGAAACGGTTGGAACTTATGAGTTTCATTTTTGCATACTTTTAGTAATAACACCATTTTTGAAATTTTTGAAATGCTTGATTTTTGAGAGGAGCACTGTAGTAAATTTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCTGCCTCATAAAAAGTATAA</pcr_primer_p1>
		<pcr_primer_p2>TCAACTATTACGTTGTTGTTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>GGTCTGCCTCATAAAAAGTATAAGGAAAAAAACATTTATTAGGTGTATAATTTCTCTTCTCCAGAAATTTAATTAAAACCAGGTATACGGTAGTATGGGGCGGAGCCAAGTTTTGGATAGCTAATCAAAGGATACTGTAAGTTTTTGAAACCACAAGAGCATAGGGAAAAGAGAACGAAGTTTGGCGGCAAACTACCGGAATAGTTTGATAGAGAAAACAACAACGTAATAGTTGA</canonical_amplicon>
		<polymorphic_amplicon>GGTCTGCCTCATAAAAAGTATAAGGAAAAAAACATTTATTAGGTGTATAATTTCTCTTYTCCAGAAATTTAATTAAAACCAGGTATACGGTAGTATGGGGCGGAGCCAAGTTTTGGATAGCTAATCAAAGGATACTGTAAGTTTTTGAAACCACAAGAGCATAGGGAAAAGAGAACGAAGTTTGGCGGCAAACTACCGGAATAGTTTGATAGAGAAAACAACAACGTAATAGTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18727</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>557079</contig_pos>
        <strand>+</strand>
        <context>ATTAGGTGTA[C/T]AATTTCTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGGGTCTGCCTCATAAAAAGTATAAGGAAAAAAACATTTATTAGGTGTA</left_flank>
        <right_flank>AATTTCTCTTCTCCAGAAATTTAATTAAAACCAGGTATACGGTAGTATGG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCTAAAAAAAATCTTCGGGAATATTCCGATCAGAATTTCCTAGATTTTCGGAGTTCCGAATTCTGTTCCATACATCCCTGGGACCTGAGAAAGAGTGAAGACGTGAAAAAAATAAAGTCCCGTTTATGAGCTTGAAATACAGTACTAAAAGTAACTCGCTGTTTTTACGATTTTTCCACGTGGCCAGGAGCATGATGACATCGAAAGAAAGGCAGCAGAGTTGGAATGCAAAAATACACCACAAAACAATCTGATTTACAATGGACATCTCTTGAAAACTGATATTTCTATCCGATTCTCGAGAGAAAAAATCCATTGAGTTTCCAGAGATTTTGGAGGGTGCTACTCCATCTGCTCAATCCAGGAAGAAATGGCAGAAGTGAATATTGGGTCCGCCTTCACGGGATCGCGTGTAAACCGTTATCGGATTGGAAATTGGAGGAAGGAGTGGGTCTGCCTCATAAAAAGTATAAGGAAAAAAACATTTATTAGGTGTATAATTTCTCTTCTCCAGAAATTTAATTAAAACCAGGTATACGGTAGTATGGGGCGGAGCCAAGTTTTGGATAGCTAATCAAAGGATACTGTAAGTTTTTGAAACCACAAGAGCATAGGGAAAAGAGAACGAAGTTTGGCGGCAAACTACCGGAATAGTTTGATAGAGAAAACAACAACGTAATAGTTGATTTCTAGAGAGCAATCAGCAATCATTAGTTGATAAACATCCAGATAGGAAAACATAACTCTAAAAATCATTGGTGGCCTAAATCAGCTGTTCAAAGAGAGGACGGAAAATAAAGTATTCTTCAAAGTTGTGTTTATGTTTACCATTGAATTTATCCGAAAATTTAAAAGTGGTTCGTTGAAATGAGTTTTTTTAGTGCGTAACTTACAAGTGGAAACGGTTGGAACTTATGAGTTTCATTTTTGCATACTTTTAGTAATAACACCATTTTTGAAATTTTTGAAATGCTTGATTTTTGAGAGGAGCACTGTAG</canonical>
            <polymorphic>TTCCTAAAAAAAATCTTCGGGAATATTCCGATCAGAATTTCCTAGATTTTCGGAGTTCCGAATTCTGTTCCATACATCCCTGGGACCTGAGAAAGAGTGAAGACGTGAAAAAAATAAAGTCCCGTTTATGAGCTTGAAATACAGTACTAAAAGTAACTCGCTGTTTTTACGATTTTTCCACGTGGCCAGGAGCATGATGACATCGAAAGAAAGGCAGCAGAGTTGGAATGCAAAAATACACCACAAAACAATCTGATTTACAATGGACATCTCTTGAAAACTGATATTTCTATCCGATTCTCGAGAGAAAAAATCCATTGAGTTTCCAGAGATTTTGGAGGGTGCTACTCCATCTGCTCAATCCAGGAAGAAATGGCAGAAGTGAATATTGGGTCCGCCTTCACGGGATCGCGTGTAAACCGTTATCGGATTGGAAATTGGAGGAAGGAGTGGGTCTGCCTCATAAAAAGTATAAGGAAAAAAACATTTATTAGGTGTAYAATTTCTCTTCTCCAGAAATTTAATTAAAACCAGGTATACGGTAGTATGGGGCGGAGCCAAGTTTTGGATAGCTAATCAAAGGATACTGTAAGTTTTTGAAACCACAAGAGCATAGGGAAAAGAGAACGAAGTTTGGCGGCAAACTACCGGAATAGTTTGATAGAGAAAACAACAACGTAATAGTTGATTTCTAGAGAGCAATCAGCAATCATTAGTTGATAAACATCCAGATAGGAAAACATAACTCTAAAAATCATTGGTGGCCTAAATCAGCTGTTCAAAGAGAGGACGGAAAATAAAGTATTCTTCAAAGTTGTGTTTATGTTTACCATTGAATTTATCCGAAAATTTAAAAGTGGTTCGTTGAAATGAGTTTTTTTAGTGCGTAACTTACAAGTGGAAACGGTTGGAACTTATGAGTTTCATTTTTGCATACTTTTAGTAATAACACCATTTTTGAAATTTTTGAAATGCTTGATTTTTGAGAGGAGCACTGTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGAAATGGCAGAAGTGAATA</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAAACTTACAGTATCCTTTG</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>GAAGAAATGGCAGAAGTGAATATTGGGTCCGCCTTCACGGGATCGCGTGTAAACCGTTATCGGATTGGAAATTGGAGGAAGGAGTGGGTCTGCCTCATAAAAAGTATAAGGAAAAAAACATTTATTAGGTGTATAATTTCTCTTCTCCAGAAATTTAATTAAAACCAGGTATACGGTAGTATGGGGCGGAGCCAAGTTTTGGATAGCTAATCAAAGGATACTGTAAGTTTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GAAGAAATGGCAGAAGTGAATATTGGGTCCGCCTTCACGGGATCGCGTGTAAACCGTTATCGGATTGGAAATTGGAGGAAGGAGTGGGTCTGCCTCATAAAAAGTATAAGGAAAAAAACATTTATTAGGTGTAYAATTTCTCTTCTCCAGAAATTTAATTAAAACCAGGTATACGGTAGTATGGGGCGGAGCCAAGTTTTGGATAGCTAATCAAAGGATACTGTAAGTTTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18728</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>557017</contig_pos>
        <strand>+</strand>
        <context>GGATTGGAAA[C/T]TGGAGGAAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGGGTCCGCCTTCACGGGATCGCGTGTAAACCGTTATCGGATTGGAAA</left_flank>
        <right_flank>TGGAGGAAGGAGTGGGTCTGCCTCATAAAAAGTATAAGGAAAAAAACATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGGAGACCGGAAAGCAAAACTTTTACGCCTCTTTTGACATACCGTAGTCCAAAATTTATAATTCCTAAAAAAAATCTTCGGGAATATTCCGATCAGAATTTCCTAGATTTTCGGAGTTCCGAATTCTGTTCCATACATCCCTGGGACCTGAGAAAGAGTGAAGACGTGAAAAAAATAAAGTCCCGTTTATGAGCTTGAAATACAGTACTAAAAGTAACTCGCTGTTTTTACGATTTTTCCACGTGGCCAGGAGCATGATGACATCGAAAGAAAGGCAGCAGAGTTGGAATGCAAAAATACACCACAAAACAATCTGATTTACAATGGACATCTCTTGAAAACTGATATTTCTATCCGATTCTCGAGAGAAAAAATCCATTGAGTTTCCAGAGATTTTGGAGGGTGCTACTCCATCTGCTCAATCCAGGAAGAAATGGCAGAAGTGAATATTGGGTCCGCCTTCACGGGATCGCGTGTAAACCGTTATCGGATTGGAAATTGGAGGAAGGAGTGGGTCTGCCTCATAAAAAGTATAAGGAAAAAAACATTTATTAGGTGTATAATTTCTCTTCTCCAGAAATTTAATTAAAACCAGGTATACGGTAGTATGGGGCGGAGCCAAGTTTTGGATAGCTAATCAAAGGATACTGTAAGTTTTTGAAACCACAAGAGCATAGGGAAAAGAGAACGAAGTTTGGCGGCAAACTACCGGAATAGTTTGATAGAGAAAACAACAACGTAATAGTTGATTTCTAGAGAGCAATCAGCAATCATTAGTTGATAAACATCCAGATAGGAAAACATAACTCTAAAAATCATTGGTGGCCTAAATCAGCTGTTCAAAGAGAGGACGGAAAATAAAGTATTCTTCAAAGTTGTGTTTATGTTTACCATTGAATTTATCCGAAAATTTAAAAGTGGTTCGTTGAAATGAGTTTTTTTAGTGCGTAACTTACAAGTGGAAACGGTTGGAACTTATGAGTTTCATTTTTGCATACT</canonical>
            <polymorphic>CTGGAGACCGGAAAGCAAAACTTTTACGCCTCTTTTGACATACCGTAGTCCAAAATTTATAATTCCTAAAAAAAATCTTCGGGAATATTCCGATCAGAATTTCCTAGATTTTCGGAGTTCCGAATTCTGTTCCATACATCCCTGGGACCTGAGAAAGAGTGAAGACGTGAAAAAAATAAAGTCCCGTTTATGAGCTTGAAATACAGTACTAAAAGTAACTCGCTGTTTTTACGATTTTTCCACGTGGCCAGGAGCATGATGACATCGAAAGAAAGGCAGCAGAGTTGGAATGCAAAAATACACCACAAAACAATCTGATTTACAATGGACATCTCTTGAAAACTGATATTTCTATCCGATTCTCGAGAGAAAAAATCCATTGAGTTTCCAGAGATTTTGGAGGGTGCTACTCCATCTGCTCAATCCAGGAAGAAATGGCAGAAGTGAATATTGGGTCCGCCTTCACGGGATCGCGTGTAAACCGTTATCGGATTGGAAAYTGGAGGAAGGAGTGGGTCTGCCTCATAAAAAGTATAAGGAAAAAAACATTTATTAGGTGTATAATTTCTCTTCTCCAGAAATTTAATTAAAACCAGGTATACGGTAGTATGGGGCGGAGCCAAGTTTTGGATAGCTAATCAAAGGATACTGTAAGTTTTTGAAACCACAAGAGCATAGGGAAAAGAGAACGAAGTTTGGCGGCAAACTACCGGAATAGTTTGATAGAGAAAACAACAACGTAATAGTTGATTTCTAGAGAGCAATCAGCAATCATTAGTTGATAAACATCCAGATAGGAAAACATAACTCTAAAAATCATTGGTGGCCTAAATCAGCTGTTCAAAGAGAGGACGGAAAATAAAGTATTCTTCAAAGTTGTGTTTATGTTTACCATTGAATTTATCCGAAAATTTAAAAGTGGTTCGTTGAAATGAGTTTTTTTAGTGCGTAACTTACAAGTGGAAACGGTTGGAACTTATGAGTTTCATTTTTGCATACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>375 313 91 65 53 37 25 17 12 7 5</canonical_bands>
                <polymorphic_bands>440 313 91 53 37 25 17 12 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCCATTGAGTTTCCAGAG</pcr_primer_p1>
		<pcr_primer_p2>CATACTACCGTATACCTGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AAATCCATTGAGTTTCCAGAGATTTTGGAGGGTGCTACTCCATCTGCTCAATCCAGGAAGAAATGGCAGAAGTGAATATTGGGTCCGCCTTCACGGGATCGCGTGTAAACCGTTATCGGATTGGAAATTGGAGGAAGGAGTGGGTCTGCCTCATAAAAAGTATAAGGAAAAAAACATTTATTAGGTGTATAATTTCTCTTCTCCAGAAATTTAATTAAAACCAGGTATACGGTAGTATG</canonical_amplicon>
		<polymorphic_amplicon>AAATCCATTGAGTTTCCAGAGATTTTGGAGGGTGCTACTCCATCTGCTCAATCCAGGAAGAAATGGCAGAAGTGAATATTGGGTCCGCCTTCACGGGATCGCGTGTAAACCGTTATCGGATTGGAAAYTGGAGGAAGGAGTGGGTCTGCCTCATAAAAAGTATAAGGAAAAAAACATTTATTAGGTGTATAATTTCTCTTCTCCAGAAATTTAATTAAAACCAGGTATACGGTAGTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18729</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>557001</contig_pos>
        <strand>+</strand>
        <context>CGTGTAAACC[A/G]TTATCGGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGGCAGAAGTGAATATTGGGTCCGCCTTCACGGGATCGCGTGTAAACC</left_flank>
        <right_flank>TTATCGGATTGGAAATTGGAGGAAGGAGTGGGTCTGCCTCATAAAAAGTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTAAAGTGATTCTGCTGGAGACCGGAAAGCAAAACTTTTACGCCTCTTTTGACATACCGTAGTCCAAAATTTATAATTCCTAAAAAAAATCTTCGGGAATATTCCGATCAGAATTTCCTAGATTTTCGGAGTTCCGAATTCTGTTCCATACATCCCTGGGACCTGAGAAAGAGTGAAGACGTGAAAAAAATAAAGTCCCGTTTATGAGCTTGAAATACAGTACTAAAAGTAACTCGCTGTTTTTACGATTTTTCCACGTGGCCAGGAGCATGATGACATCGAAAGAAAGGCAGCAGAGTTGGAATGCAAAAATACACCACAAAACAATCTGATTTACAATGGACATCTCTTGAAAACTGATATTTCTATCCGATTCTCGAGAGAAAAAATCCATTGAGTTTCCAGAGATTTTGGAGGGTGCTACTCCATCTGCTCAATCCAGGAAGAAATGGCAGAAGTGAATATTGGGTCCGCCTTCACGGGATCGCGTGTAAACCGTTATCGGATTGGAAATTGGAGGAAGGAGTGGGTCTGCCTCATAAAAAGTATAAGGAAAAAAACATTTATTAGGTGTATAATTTCTCTTCTCCAGAAATTTAATTAAAACCAGGTATACGGTAGTATGGGGCGGAGCCAAGTTTTGGATAGCTAATCAAAGGATACTGTAAGTTTTTGAAACCACAAGAGCATAGGGAAAAGAGAACGAAGTTTGGCGGCAAACTACCGGAATAGTTTGATAGAGAAAACAACAACGTAATAGTTGATTTCTAGAGAGCAATCAGCAATCATTAGTTGATAAACATCCAGATAGGAAAACATAACTCTAAAAATCATTGGTGGCCTAAATCAGCTGTTCAAAGAGAGGACGGAAAATAAAGTATTCTTCAAAGTTGTGTTTATGTTTACCATTGAATTTATCCGAAAATTTAAAAGTGGTTCGTTGAAATGAGTTTTTTTAGTGCGTAACTTACAAGTGGAAACGGTTGGAACTTATGAGT</canonical>
            <polymorphic>AATTAAAGTGATTCTGCTGGAGACCGGAAAGCAAAACTTTTACGCCTCTTTTGACATACCGTAGTCCAAAATTTATAATTCCTAAAAAAAATCTTCGGGAATATTCCGATCAGAATTTCCTAGATTTTCGGAGTTCCGAATTCTGTTCCATACATCCCTGGGACCTGAGAAAGAGTGAAGACGTGAAAAAAATAAAGTCCCGTTTATGAGCTTGAAATACAGTACTAAAAGTAACTCGCTGTTTTTACGATTTTTCCACGTGGCCAGGAGCATGATGACATCGAAAGAAAGGCAGCAGAGTTGGAATGCAAAAATACACCACAAAACAATCTGATTTACAATGGACATCTCTTGAAAACTGATATTTCTATCCGATTCTCGAGAGAAAAAATCCATTGAGTTTCCAGAGATTTTGGAGGGTGCTACTCCATCTGCTCAATCCAGGAAGAAATGGCAGAAGTGAATATTGGGTCCGCCTTCACGGGATCGCGTGTAAACCRTTATCGGATTGGAAATTGGAGGAAGGAGTGGGTCTGCCTCATAAAAAGTATAAGGAAAAAAACATTTATTAGGTGTATAATTTCTCTTCTCCAGAAATTTAATTAAAACCAGGTATACGGTAGTATGGGGCGGAGCCAAGTTTTGGATAGCTAATCAAAGGATACTGTAAGTTTTTGAAACCACAAGAGCATAGGGAAAAGAGAACGAAGTTTGGCGGCAAACTACCGGAATAGTTTGATAGAGAAAACAACAACGTAATAGTTGATTTCTAGAGAGCAATCAGCAATCATTAGTTGATAAACATCCAGATAGGAAAACATAACTCTAAAAATCATTGGTGGCCTAAATCAGCTGTTCAAAGAGAGGACGGAAAATAAAGTATTCTTCAAAGTTGTGTTTATGTTTACCATTGAATTTATCCGAAAATTTAAAAGTGGTTCGTTGAAATGAGTTTTTTTAGTGCGTAACTTACAAGTGGAAACGGTTGGAACTTATGAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>318 278 161 120 60 47 16</canonical_bands>
                <polymorphic_bands>398 318 161 60 47 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATACACCACAAAACAATCT</pcr_primer_p1>
		<pcr_primer_p2>CCTTATACTTTTTATGAGGCAGAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAATACACCACAAAACAATCTGATTTACAATGGACATCTCTTGAAAACTGATATTTCTATCCGATTCTCGAGAGAAAAAATCCATTGAGTTTCCAGAGATTTTGGAGGGTGCTACTCCATCTGCTCAATCCAGGAAGAAATGGCAGAAGTGAATATTGGGTCCGCCTTCACGGGATCGCGTGTAAACCGTTATCGGATTGGAAATTGGAGGAAGGAGTGGGTCTGCCTCATAAAAAGTATAAGG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATACACCACAAAACAATCTGATTTACAATGGACATCTCTTGAAAACTGATATTTCTATCCGATTCTCGAGAGAAAAAATCCATTGAGTTTCCAGAGATTTTGGAGGGTGCTACTCCATCTGCTCAATCCAGGAAGAAATGGCAGAAGTGAATATTGGGTCCGCCTTCACGGGATCGCGTGTAAACCRTTATCGGATTGGAAATTGGAGGAAGGAGTGGGTCTGCCTCATAAAAAGTATAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18730</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>556838</contig_pos>
        <strand>+</strand>
        <context>CAATCTGATT[C/T]ACAATGGACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAGGCAGCAGAGTTGGAATGCAAAAATACACCACAAAACAATCTGATT</left_flank>
        <right_flank>ACAATGGACATCTCTTGAAAACTGATATTTCTATCCGATTCTCGAGAGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTCCGATTTTTTAAACTTTGGAATTTTGGAGTTTCCTGGTTTTTAGAAATTTGGAATTTCGGAATATTCCGATTATTGAAAAAATTTTTAACACTCAAATTTAAAAATTGTAATTCACAAAAACTATTGAAAAATTGACGAAACAATTTCGAAAACGCAAAAATTAAAGTGATTCTGCTGGAGACCGGAAAGCAAAACTTTTACGCCTCTTTTGACATACCGTAGTCCAAAATTTATAATTCCTAAAAAAAATCTTCGGGAATATTCCGATCAGAATTTCCTAGATTTTCGGAGTTCCGAATTCTGTTCCATACATCCCTGGGACCTGAGAAAGAGTGAAGACGTGAAAAAAATAAAGTCCCGTTTATGAGCTTGAAATACAGTACTAAAAGTAACTCGCTGTTTTTACGATTTTTCCACGTGGCCAGGAGCATGATGACATCGAAAGAAAGGCAGCAGAGTTGGAATGCAAAAATACACCACAAAACAATCTGATTTACAATGGACATCTCTTGAAAACTGATATTTCTATCCGATTCTCGAGAGAAAAAATCCATTGAGTTTCCAGAGATTTTGGAGGGTGCTACTCCATCTGCTCAATCCAGGAAGAAATGGCAGAAGTGAATATTGGGTCCGCCTTCACGGGATCGCGTGTAAACCGTTATCGGATTGGAAATTGGAGGAAGGAGTGGGTCTGCCTCATAAAAAGTATAAGGAAAAAAACATTTATTAGGTGTATAATTTCTCTTCTCCAGAAATTTAATTAAAACCAGGTATACGGTAGTATGGGGCGGAGCCAAGTTTTGGATAGCTAATCAAAGGATACTGTAAGTTTTTGAAACCACAAGAGCATAGGGAAAAGAGAACGAAGTTTGGCGGCAAACTACCGGAATAGTTTGATAGAGAAAACAACAACGTAATAGTTGATTTCTAGAGAGCAATCAGCAATCATTAGTTGATAAACATCCAGATAGGAAAACATAACTCTAAAAATCATT</canonical>
            <polymorphic>GATTCCGATTTTTTAAACTTTGGAATTTTGGAGTTTCCTGGTTTTTAGAAATTTGGAATTTCGGAATATTCCGATTATTGAAAAAATTTTTAACACTCAAATTTAAAAATTGTAATTCACAAAAACTATTGAAAAATTGACGAAACAATTTCGAAAACGCAAAAATTAAAGTGATTCTGCTGGAGACCGGAAAGCAAAACTTTTACGCCTCTTTTGACATACCGTAGTCCAAAATTTATAATTCCTAAAAAAAATCTTCGGGAATATTCCGATCAGAATTTCCTAGATTTTCGGAGTTCCGAATTCTGTTCCATACATCCCTGGGACCTGAGAAAGAGTGAAGACGTGAAAAAAATAAAGTCCCGTTTATGAGCTTGAAATACAGTACTAAAAGTAACTCGCTGTTTTTACGATTTTTCCACGTGGCCAGGAGCATGATGACATCGAAAGAAAGGCAGCAGAGTTGGAATGCAAAAATACACCACAAAACAATCTGATTYACAATGGACATCTCTTGAAAACTGATATTTCTATCCGATTCTCGAGAGAAAAAATCCATTGAGTTTCCAGAGATTTTGGAGGGTGCTACTCCATCTGCTCAATCCAGGAAGAAATGGCAGAAGTGAATATTGGGTCCGCCTTCACGGGATCGCGTGTAAACCGTTATCGGATTGGAAATTGGAGGAAGGAGTGGGTCTGCCTCATAAAAAGTATAAGGAAAAAAACATTTATTAGGTGTATAATTTCTCTTCTCCAGAAATTTAATTAAAACCAGGTATACGGTAGTATGGGGCGGAGCCAAGTTTTGGATAGCTAATCAAAGGATACTGTAAGTTTTTGAAACCACAAGAGCATAGGGAAAAGAGAACGAAGTTTGGCGGCAAACTACCGGAATAGTTTGATAGAGAAAACAACAACGTAATAGTTGATTTCTAGAGAGCAATCAGCAATCATTAGTTGATAAACATCCAGATAGGAAAACATAACTCTAAAAATCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTTATGAGCTTGAAATACAGT</pcr_primer_p1>
		<pcr_primer_p2>GGATTGAGCAGATGGAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CGTTTATGAGCTTGAAATACAGTACTAAAAGTAACTCGCTGTTTTTACGATTTTTCCACGTGGCCAGGAGCATGATGACATCGAAAGAAAGGCAGCAGAGTTGGAATGCAAAAATACACCACAAAACAATCTGATTTACAATGGACATCTCTTGAAAACTGATATTTCTATCCGATTCTCGAGAGAAAAAATCCATTGAGTTTCCAGAGATTTTGGAGGGTGCTACTCCATCTGCTCAATCC</canonical_amplicon>
		<polymorphic_amplicon>CGTTTATGAGCTTGAAATACAGTACTAAAAGTAACTCGCTGTTTTTACGATTTTTCCACGTGGCCAGGAGCATGATGACATCGAAAGAAAGGCAGCAGAGTTGGAATGCAAAAATACACCACAAAACAATCTGATTYACAATGGACATCTCTTGAAAACTGATATTTCTATCCGATTCTCGAGAGAAAAAATCCATTGAGTTTCCAGAGATTTTGGAGGGTGCTACTCCATCTGCTCAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18731</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>556739</contig_pos>
        <strand>+</strand>
        <context>AAAGTWACTC[A/G]CTGTTTTTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAATAAAGTCCCGTTTATGAGCTTGAAATACAGTACTAAAAGTAACTC</left_flank>
        <right_flank>CTGTTTTTACGATTTTTCCACGTGGCCAGGAGCATGATGACATCGAAAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGTTTGGCAAGGCCTTTTCTAAATTTTTGGAATTTCGGAGTATTCCGATTTTTAAAGTTTTGGAAGATTCCGATTTTTTAAACTTTGGAATTTTGGAGTTTCCTGGTTTTTAGAAATTTGGAATTTCGGAATATTCCGATTATTGAAAAAATTTTTAACACTCAAATTTAAAAATTGTAATTCACAAAAACTATTGAAAAATTGACGAAACAATTTCGAAAACGCAAAAATTAAAGTGATTCTGCTGGAGACCGGAAAGCAAAACTTTTACGCCTCTTTTGACATACCGTAGTCCAAAATTTATAATTCCTAAAAAAAATCTTCGGGAATATTCCGATCAGAATTTCCTAGATTTTCGGAGTTCCGAATTCTGTTCCATACATCCCTGGGACCTGAGAAAGAGTGAAGACGTGAAAAAAATAAAGTCCCGTTTATGAGCTTGAAATACAGTACTAAAAGTAACTCGCTGTTTTTACGATTTTTCCACGTGGCCAGGAGCATGATGACATCGAAAGAAAGGCAGCAGAGTTGGAATGCAAAAATACACCACAAAACAATCTGATTTACAATGGACATCTCTTGAAAACTGATATTTCTATCCGATTCTCGAGAGAAAAAATCCATTGAGTTTCCAGAGATTTTGGAGGGTGCTACTCCATCTGCTCAATCCAGGAAGAAATGGCAGAAGTGAATATTGGGTCCGCCTTCACGGGATCGCGTGTAAACCGTTATCGGATTGGAAATTGGAGGAAGGAGTGGGTCTGCCTCATAAAAAGTATAAGGAAAAAAACATTTATTAGGTGTATAATTTCTCTTCTCCAGAAATTTAATTAAAACCAGGTATACGGTAGTATGGGGCGGAGCCAAGTTTTGGATAGCTAATCAAAGGATACTGTAAGTTTTTGAAACCACAAGAGCATAGGGAAAAGAGAACGAAGTTTGGCGGCAAACTACCGGAATAGTTTG</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGTTTGGCAAGGCCTTTTCTAAATTTTTGGAATTTCGGAGTATTCCGATTTTTAAAGTTTTGGAAGATTCCGATTTTTTAAACTTTGGAATTTTGGAGTTTCCTGGTTTTTAGAAATTTGGAATTTCGGAATATTCCGATTATTGAAAAAATTTTTAACACTCAAATTTAAAAATTGTAATTCACAAAAACTATTGAAAAATTGACGAAACAATTTCGAAAACGCAAAAATTAAAGTGATTCTGCTGGAGACCGGAAAGCAAAACTTTTACGCCTCTTTTGACATACCGTAGTCCAAAATTTATAATTCCTAAAAAAAATCTTCGGGAATATTCCGATCAGAATTTCCTAGATTTTCGGAGTTCCGAATTCTGTTCCATACATCCCTGGGACCTGAGAAAGAGTGAAGACGTGAAAAAAATAAAGTCCCGTTTATGAGCTTGAAATACAGTACTAAAAGTAACTCRCTGTTTTTACGATTTTTCCACGTGGCCAGGAGCATGATGACATCGAAAGAAAGGCAGCAGAGTTGGAATGCAAAAATACACCACAAAACAATCTGATTTACAATGGACATCTCTTGAAAACTGATATTTCTATCCGATTCTCGAGAGAAAAAATCCATTGAGTTTCCAGAGATTTTGGAGGGTGCTACTCCATCTGCTCAATCCAGGAAGAAATGGCAGAAGTGAATATTGGGTCCGCCTTCACGGGATCGCGTGTAAACCGTTATCGGATTGGAAATTGGAGGAAGGAGTGGGTCTGCCTCATAAAAAGTATAAGGAAAAAAACATTTATTAGGTGTATAATTTCTCTTCTCCAGAAATTTAATTAAAACCAGGTATACGGTAGTATGGGGCGGAGCCAAGTTTTGGATAGCTAATCAAAGGATACTGTAAGTTTTTGAAACCACAAGAGCATAGGGAAAAGAGAACGAAGTTTGGCGGCAAACTACCGGAATAGTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGGATTTTTGTGAGAACTGT</pcr_primer_p1>
		<pcr_primer_p2>TATTTTTGCATTCCAACTCTG</pcr_primer_p2>
		<pcr_amplicon_size>864</pcr_amplicon_size>
		<canonical_amplicon>CGCTGTTTTTACGATTTTTCCACGTGGCCAGGAGCATGATGACATCGAAAGAAAGGCAGCAGAGTTGGAATGCAAAAATA</canonical_amplicon>
		<polymorphic_amplicon>CRCTGTTTTTACGATTTTTCCACGTGGCCAGGAGCATGATGACATCGAAAGAAAGGCAGCAGAGTTGGAATGCAAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18732</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>556734</contig_pos>
        <strand>+</strand>
        <context>TACTAAAAGT[A/T]ACTCRCTGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGAAAAAAATAAAGTCCCGTTTATGAGCTTGAAATACAGTACTAAAAGT</left_flank>
        <right_flank>ACTCGCTGTTTTTACGATTTTTCCACGTGGCCAGGAGCATGATGACATCG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGTTTGGCAAGGCCTTTTCTAAATTTTTGGAATTTCGGAGTATTCCGATTTTTAAAGTTTTGGAAGATTCCGATTTTTTAAACTTTGGAATTTTGGAGTTTCCTGGTTTTTAGAAATTTGGAATTTCGGAATATTCCGATTATTGAAAAAATTTTTAACACTCAAATTTAAAAATTGTAATTCACAAAAACTATTGAAAAATTGACGAAACAATTTCGAAAACGCAAAAATTAAAGTGATTCTGCTGGAGACCGGAAAGCAAAACTTTTACGCCTCTTTTGACATACCGTAGTCCAAAATTTATAATTCCTAAAAAAAATCTTCGGGAATATTCCGATCAGAATTTCCTAGATTTTCGGAGTTCCGAATTCTGTTCCATACATCCCTGGGACCTGAGAAAGAGTGAAGACGTGAAAAAAATAAAGTCCCGTTTATGAGCTTGAAATACAGTACTAAAAGTAACTCGCTGTTTTTACGATTTTTCCACGTGGCCAGGAGCATGATGACATCGAAAGAAAGGCAGCAGAGTTGGAATGCAAAAATACACCACAAAACAATCTGATTTACAATGGACATCTCTTGAAAACTGATATTTCTATCCGATTCTCGAGAGAAAAAATCCATTGAGTTTCCAGAGATTTTGGAGGGTGCTACTCCATCTGCTCAATCCAGGAAGAAATGGCAGAAGTGAATATTGGGTCCGCCTTCACGGGATCGCGTGTAAACCGTTATCGGATTGGAAATTGGAGGAAGGAGTGGGTCTGCCTCATAAAAAGTATAAGGAAAAAAACATTTATTAGGTGTATAATTTCTCTTCTCCAGAAATTTAATTAAAACCAGGTATACGGTAGTATGGGGCGGAGCCAAGTTTTGGATAGCTAATCAAAGGATACTGTAAGTTTTTGAAACCACAAGAGCATAGGGAAAAGAGAACGAAGTTTGGCGGCAAACTACCGGAATA</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGTTTGGCAAGGCCTTTTCTAAATTTTTGGAATTTCGGAGTATTCCGATTTTTAAAGTTTTGGAAGATTCCGATTTTTTAAACTTTGGAATTTTGGAGTTTCCTGGTTTTTAGAAATTTGGAATTTCGGAATATTCCGATTATTGAAAAAATTTTTAACACTCAAATTTAAAAATTGTAATTCACAAAAACTATTGAAAAATTGACGAAACAATTTCGAAAACGCAAAAATTAAAGTGATTCTGCTGGAGACCGGAAAGCAAAACTTTTACGCCTCTTTTGACATACCGTAGTCCAAAATTTATAATTCCTAAAAAAAATCTTCGGGAATATTCCGATCAGAATTTCCTAGATTTTCGGAGTTCCGAATTCTGTTCCATACATCCCTGGGACCTGAGAAAGAGTGAAGACGTGAAAAAAATAAAGTCCCGTTTATGAGCTTGAAATACAGTACTAAAAGTWACTCGCTGTTTTTACGATTTTTCCACGTGGCCAGGAGCATGATGACATCGAAAGAAAGGCAGCAGAGTTGGAATGCAAAAATACACCACAAAACAATCTGATTTACAATGGACATCTCTTGAAAACTGATATTTCTATCCGATTCTCGAGAGAAAAAATCCATTGAGTTTCCAGAGATTTTGGAGGGTGCTACTCCATCTGCTCAATCCAGGAAGAAATGGCAGAAGTGAATATTGGGTCCGCCTTCACGGGATCGCGTGTAAACCGTTATCGGATTGGAAATTGGAGGAAGGAGTGGGTCTGCCTCATAAAAAGTATAAGGAAAAAAACATTTATTAGGTGTATAATTTCTCTTCTCCAGAAATTTAATTAAAACCAGGTATACGGTAGTATGGGGCGGAGCCAAGTTTTGGATAGCTAATCAAAGGATACTGTAAGTTTTTGAAACCACAAGAGCATAGGGAAAAGAGAACGAAGTTTGGCGGCAAACTACCGGAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGGATTTTTGTGAGAACTGT</pcr_primer_p1>
		<pcr_primer_p2>TATTTTTGCATTCCAACTCTG</pcr_primer_p2>
		<pcr_amplicon_size>864</pcr_amplicon_size>
		<canonical_amplicon>TAACTCGCTGTTTTTACGATTTTTCCACGTGGCCAGGAGCATGATGACATCGAAAGAAAGGCAGCAGAGTTGGAATGCAAAAATA</canonical_amplicon>
		<polymorphic_amplicon>TWACTCGCTGTTTTTACGATTTTTCCACGTGGCCAGGAGCATGATGACATCGAAAGAAAGGCAGCAGAGTTGGAATGCAAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18734</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>610798</contig_pos>
        <strand>+</strand>
        <context>ATTTGAATTG[C/G]TTATGCTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACTAATCCTCAACCACCCTCACCAGATTATGCGAGGGTGGATTTGAATTG</left_flank>
        <right_flank>TTATGCTTTCGCTAAGACAGCAATCATTTCCGTTTTACTGACTTCATTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATTAGCTCGTTTCCTGTGGTGCGGGTGGATGGGGGAGATGGTCGCGAATTTGTTAAGCTAGTCACAAAAGTTGCTCAATGATGATAACATGTAGTGTTTTTCAGTGTTTTTCAGTTTTTTATAGAAGGCTTTTCAGCTTTGGAACGGATCTGGGGATTGTTTTTTTGAAATTCATTTCGAAATTCGTTTTGTTATTTTTCTGATTTTCGGAAAACTGGGATGAAAGATCTATTGGAAACCCGTTGCTGATCGTTGAGTAATTGAAAGAAGCTTAACAAAACGTGAAGAATCTTGTAAGGGTCCCTCAAAAATCCAGCATTAATTTTTTATTCTAATCCTTGTAGGATCACTATCAAATCCTTTTCTTCCAGTCTTATGTTTATCTTTTGTTTCTTAAAAATCCATTTTTCTAATTATTCTTATTGGTCAAACACTTGATATTTTTCCACTAATCCTCAACCACCCTCACCAGATTATGCGAGGGTGGATTTGAATTGGTTATGCTTTCGCTAAGACAGCAATCATTTCCGTTTTACTGACTTCATTTTCCAGCCTGACCAGCTTATGTCCAATGTACAAACCCTAAATAGAGTATTTTTCACGGAAAAAAAGTACTTTTCGTATAGATCATCCTCTCTTCACATGACCGATGCGTGCCCGCTCGAAAACCACAAAACACTCAAAAGTGAACCTGGTGAATCGGAAAGAAGAGATAAAAACTCTTACAACTTTACGGCGGTAGCGCGAACAGAGAACAAACTGTAATCGGTCCGCAGTGGAAGAAATGTGACTATGATGTGTAAATATGCGGTATTATTTGAGGGCACCTATAGCGTAGTCTTACGGAGGTTATGAAAAAATGAATGCTTTCTTGGAAAAGTGCAAGGAGAGGGATGATAAAAACAAAAATGATGAAATCTCAACAATAAAATGATATGAACGAGTTGTGGAAAAACAGTTATGATCCACTTAAAAGTTCGGTCATTTTGACTATAGTC</canonical>
            <polymorphic>AGATTAGCTCGTTTCCTGTGGTGCGGGTGGATGGGGGAGATGGTCGCGAATTTGTTAAGCTAGTCACAAAAGTTGCTCAATGATGATAACATGTAGTGTTTTTCAGTGTTTTTCAGTTTTTTATAGAAGGCTTTTCAGCTTTGGAACGGATCTGGGGATTGTTTTTTTGAAATTCATTTCGAAATTCGTTTTGTTATTTTTCTGATTTTCGGAAAACTGGGATGAAAGATCTATTGGAAACCCGTTGCTGATCGTTGAGTAATTGAAAGAAGCTTAACAAAACGTGAAGAATCTTGTAAGGGTCCCTCAAAAATCCAGCATTAATTTTTTATTCTAATCCTTGTAGGATCACTATCAAATCCTTTTCTTCCAGTCTTATGTTTATCTTTTGTTTCTTAAAAATCCATTTTTCTAATTATTCTTATTGGTCAAACACTTGATATTTTTCCACTAATCCTCAACCACCCTCACCAGATTATGCGAGGGTGGATTTGAATTGSTTATGCTTTCGCTAAGACAGCAATCATTTCCGTTTTACTGACTTCATTTTCCAGCCTGACCAGCTTATGTCCAATGTACAAACCCTAAATAGAGTATTTTTCACGGAAAAAAAGTACTTTTCGTATAGATCATCCTCTCTTCACATGACCGATGCGTGCCCGCTCGAAAACCACAAAACACTCAAAAGTGAACCTGGTGAATCGGAAAGAAGAGATAAAAACTCTTACAACTTTACGGCGGTAGCGCGAACAGAGAACAAACTGTAATCGGTCCGCAGTGGAAGAAATGTGACTATGATGTGTAAATATGCGGTATTATTTGAGGGCACCTATAGCGTAGTCTTACGGAGGTTATGAAAAAATGAATGCTTTCTTGGAAAAGTGCAAGGAGAGGGATGATAAAAACAAAAATGATGAAATCTCAACAATAAAATGATATGAACGAGTTGTGGAAAAACAGTTATGATCCACTTAAAAGTTCGGTCATTTTGACTATAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCTTTTCTTCCAGTCTTATGT</pcr_primer_p1>
		<pcr_primer_p2>CCGTGAAAAATACTCTATTTAGG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATCCTTTTCTTCCAGTCTTATGTTTATCTTTTGTTTCTTAAAAATCCATTTTTCTAATTATTCTTATTGGTCAAACACTTGATATTTTTCCACTAATCCTCAACCACCCTCACCAGATTATGCGAGGGTGGATTTGAATTGGTTATGCTTTCGCTAAGACAGCAATCATTTCCGTTTTACTGACTTCATTTTCCAGCCTGACCAGCTTATGTCCAATGTACAAACCCTAAATAGAGTATTTTTCACGG</canonical_amplicon>
		<polymorphic_amplicon>ATCCTTTTCTTCCAGTCTTATGTTTATCTTTTGTTTCTTAAAAATCCATTTTTCTAATTATTCTTATTGGTCAAACACTTGATATTTTTCCACTAATCCTCAACCACCCTCACCAGATTATGCGAGGGTGGATTTGAATTGSTTATGCTTTCGCTAAGACAGCAATCATTTCCGTTTTACTGACTTCATTTTCCAGCCTGACCAGCTTATGTCCAATGTACAAACCCTAAATAGAGTATTTTTCACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18735</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>610912</contig_pos>
        <strand>+</strand>
        <context>CGGAAAAAAA[A/G]TACTTTTCGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTATGTCCAATGTACAAACCCTAAATAGAGTATTTTTCACGGAAAAAAA</left_flank>
        <right_flank>TACTTTTCGTATAGATCATCCTCTCTTCACATGACCGATGCGTGCCCGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTTTTTATAGAAGGCTTTTCAGCTTTGGAACGGATCTGGGGATTGTTTTTTTGAAATTCATTTCGAAATTCGTTTTGTTATTTTTCTGATTTTCGGAAAACTGGGATGAAAGATCTATTGGAAACCCGTTGCTGATCGTTGAGTAATTGAAAGAAGCTTAACAAAACGTGAAGAATCTTGTAAGGGTCCCTCAAAAATCCAGCATTAATTTTTTATTCTAATCCTTGTAGGATCACTATCAAATCCTTTTCTTCCAGTCTTATGTTTATCTTTTGTTTCTTAAAAATCCATTTTTCTAATTATTCTTATTGGTCAAACACTTGATATTTTTCCACTAATCCTCAACCACCCTCACCAGATTATGCGAGGGTGGATTTGAATTGGTTATGCTTTCGCTAAGACAGCAATCATTTCCGTTTTACTGACTTCATTTTCCAGCCTGACCAGCTTATGTCCAATGTACAAACCCTAAATAGAGTATTTTTCACGGAAAAAAAGTACTTTTCGTATAGATCATCCTCTCTTCACATGACCGATGCGTGCCCGCTCGAAAACCACAAAACACTCAAAAGTGAACCTGGTGAATCGGAAAGAAGAGATAAAAACTCTTACAACTTTACGGCGGTAGCGCGAACAGAGAACAAACTGTAATCGGTCCGCAGTGGAAGAAATGTGACTATGATGTGTAAATATGCGGTATTATTTGAGGGCACCTATAGCGTAGTCTTACGGAGGTTATGAAAAAATGAATGCTTTCTTGGAAAAGTGCAAGGAGAGGGATGATAAAAACAAAAATGATGAAATCTCAACAATAAAATGATATGAACGAGTTGTGGAAAAACAGTTATGATCCACTTAAAAGTTCGGTCATTTTGACTATAGTCAGTAGCCTGAAGCTTGGCTTGCATGTGTCCGATCACTTTGAAAATTTTGGAGGTTGTAATACAGACCTAGATTTAAAACTCTGTTTTCACAGAATTTTTTGAAAATTCCTCGTT</canonical>
            <polymorphic>AGTTTTTTATAGAAGGCTTTTCAGCTTTGGAACGGATCTGGGGATTGTTTTTTTGAAATTCATTTCGAAATTCGTTTTGTTATTTTTCTGATTTTCGGAAAACTGGGATGAAAGATCTATTGGAAACCCGTTGCTGATCGTTGAGTAATTGAAAGAAGCTTAACAAAACGTGAAGAATCTTGTAAGGGTCCCTCAAAAATCCAGCATTAATTTTTTATTCTAATCCTTGTAGGATCACTATCAAATCCTTTTCTTCCAGTCTTATGTTTATCTTTTGTTTCTTAAAAATCCATTTTTCTAATTATTCTTATTGGTCAAACACTTGATATTTTTCCACTAATCCTCAACCACCCTCACCAGATTATGCGAGGGTGGATTTGAATTGGTTATGCTTTCGCTAAGACAGCAATCATTTCCGTTTTACTGACTTCATTTTCCAGCCTGACCAGCTTATGTCCAATGTACAAACCCTAAATAGAGTATTTTTCACGGAAAAAAARTACTTTTCGTATAGATCATCCTCTCTTCACATGACCGATGCGTGCCCGCTCGAAAACCACAAAACACTCAAAAGTGAACCTGGTGAATCGGAAAGAAGAGATAAAAACTCTTACAACTTTACGGCGGTAGCGCGAACAGAGAACAAACTGTAATCGGTCCGCAGTGGAAGAAATGTGACTATGATGTGTAAATATGCGGTATTATTTGAGGGCACCTATAGCGTAGTCTTACGGAGGTTATGAAAAAATGAATGCTTTCTTGGAAAAGTGCAAGGAGAGGGATGATAAAAACAAAAATGATGAAATCTCAACAATAAAATGATATGAACGAGTTGTGGAAAAACAGTTATGATCCACTTAAAAGTTCGGTCATTTTGACTATAGTCAGTAGCCTGAAGCTTGGCTTGCATGTGTCCGATCACTTTGAAAATTTTGGAGGTTGTAATACAGACCTAGATTTAAAACTCTGTTTTCACAGAATTTTTTGAAAATTCCTCGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGTACT</site>
                <isoschizomers>
                    <enzyme>Acc113I</enzyme>
                    <enzyme>ScaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 463 38</canonical_bands>
                <polymorphic_bands>537 463</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>501 461 38</canonical_bands>
                <polymorphic_bands>539 461</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCATTTCCGTTTTACTGACTT</pcr_primer_p1>
		<pcr_primer_p2>CGATTACAGTTTGTTCTCTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATCATTTCCGTTTTACTGACTTCATTTTCCAGCCTGACCAGCTTATGTCCAATGTACAAACCCTAAATAGAGTATTTTTCACGGAAAAAAAGTACTTTTCGTATAGATCATCCTCTCTTCACATGACCGATGCGTGCCCGCTCGAAAACCACAAAACACTCAAAAGTGAACCTGGTGAATCGGAAAGAAGAGATAAAAACTCTTACAACTTTACGGCGGTAGCGCGAACAGAGAACAAACTGTAATCG</canonical_amplicon>
		<polymorphic_amplicon>AATCATTTCCGTTTTACTGACTTCATTTTCCAGCCTGACCAGCTTATGTCCAATGTACAAACCCTAAATAGAGTATTTTTCACGGAAAAAAARTACTTTTCGTATAGATCATCCTCTCTTCACATGACCGATGCGTGCCCGCTCGAAAACCACAAAACACTCAAAAGTGAACCTGGTGAATCGGAAAGAAGAGATAAAAACTCTTACAACTTTACGGCGGTAGCGCGAACAGAGAACAAACTGTAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18736</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>611032</contig_pos>
        <strand>+</strand>
        <context>CTTACAACTT[C/T]ACGGCGGTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAGTGAACCTGGTGAATCGGAAAGAAGAGATAAAAACTCTTACAACTT</left_flank>
        <right_flank>ACGGCGGTAGCGCGAACAGAGAACAAACTGTAATCGGTCCGCAGTGGAAG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAAACCCGTTGCTGATCGTTGAGTAATTGAAAGAAGCTTAACAAAACGTGAAGAATCTTGTAAGGGTCCCTCAAAAATCCAGCATTAATTTTTTATTCTAATCCTTGTAGGATCACTATCAAATCCTTTTCTTCCAGTCTTATGTTTATCTTTTGTTTCTTAAAAATCCATTTTTCTAATTATTCTTATTGGTCAAACACTTGATATTTTTCCACTAATCCTCAACCACCCTCACCAGATTATGCGAGGGTGGATTTGAATTGGTTATGCTTTCGCTAAGACAGCAATCATTTCCGTTTTACTGACTTCATTTTCCAGCCTGACCAGCTTATGTCCAATGTACAAACCCTAAATAGAGTATTTTTCACGGAAAAAAAGTACTTTTCGTATAGATCATCCTCTCTTCACATGACCGATGCGTGCCCGCTCGAAAACCACAAAACACTCAAAAGTGAACCTGGTGAATCGGAAAGAAGAGATAAAAACTCTTACAACTTTACGGCGGTAGCGCGAACAGAGAACAAACTGTAATCGGTCCGCAGTGGAAGAAATGTGACTATGATGTGTAAATATGCGGTATTATTTGAGGGCACCTATAGCGTAGTCTTACGGAGGTTATGAAAAAATGAATGCTTTCTTGGAAAAGTGCAAGGAGAGGGATGATAAAAACAAAAATGATGAAATCTCAACAATAAAATGATATGAACGAGTTGTGGAAAAACAGTTATGATCCACTTAAAAGTTCGGTCATTTTGACTATAGTCAGTAGCCTGAAGCTTGGCTTGCATGTGTCCGATCACTTTGAAAATTTTGGAGGTTGTAATACAGACCTAGATTTAAAACTCTGTTTTCACAGAATTTTTTGAAAATTCCTCGTTTTTCAGCTATTTGCTGATTTCTGGAAGACACCCCTTTTTGACCCGTTTTTGTACTGGAAGCGTGAAAAAATAAGTGTTTTTCAAAAATCGGCCAATAGCTGAAAAACTAAGTATTTTTAA</canonical>
            <polymorphic>TGGAAACCCGTTGCTGATCGTTGAGTAATTGAAAGAAGCTTAACAAAACGTGAAGAATCTTGTAAGGGTCCCTCAAAAATCCAGCATTAATTTTTTATTCTAATCCTTGTAGGATCACTATCAAATCCTTTTCTTCCAGTCTTATGTTTATCTTTTGTTTCTTAAAAATCCATTTTTCTAATTATTCTTATTGGTCAAACACTTGATATTTTTCCACTAATCCTCAACCACCCTCACCAGATTATGCGAGGGTGGATTTGAATTGGTTATGCTTTCGCTAAGACAGCAATCATTTCCGTTTTACTGACTTCATTTTCCAGCCTGACCAGCTTATGTCCAATGTACAAACCCTAAATAGAGTATTTTTCACGGAAAAAAAGTACTTTTCGTATAGATCATCCTCTCTTCACATGACCGATGCGTGCCCGCTCGAAAACCACAAAACACTCAAAAGTGAACCTGGTGAATCGGAAAGAAGAGATAAAAACTCTTACAACTTYACGGCGGTAGCGCGAACAGAGAACAAACTGTAATCGGTCCGCAGTGGAAGAAATGTGACTATGATGTGTAAATATGCGGTATTATTTGAGGGCACCTATAGCGTAGTCTTACGGAGGTTATGAAAAAATGAATGCTTTCTTGGAAAAGTGCAAGGAGAGGGATGATAAAAACAAAAATGATGAAATCTCAACAATAAAATGATATGAACGAGTTGTGGAAAAACAGTTATGATCCACTTAAAAGTTCGGTCATTTTGACTATAGTCAGTAGCCTGAAGCTTGGCTTGCATGTGTCCGATCACTTTGAAAATTTTGGAGGTTGTAATACAGACCTAGATTTAAAACTCTGTTTTCACAGAATTTTTTGAAAATTCCTCGTTTTTCAGCTATTTGCTGATTTCTGGAAGACACCCCTTTTTGACCCGTTTTTGTACTGGAAGCGTGAAAAAATAAGTGTTTTTCAAAAATCGGCCAATAGCTGAAAAACTAAGTATTTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCCAATGTACAAACCCTAAATA</pcr_primer_p1>
		<pcr_primer_p2>AATACCGCATATTTACACATCAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCCAATGTACAAACCCTAAATAGAGTATTTTTCACGGAAAAAAAGTACTTTTCGTATAGATCATCCTCTCTTCACATGACCGATGCGTGCCCGCTCGAAAACCACAAAACACTCAAAAGTGAACCTGGTGAATCGGAAAGAAGAGATAAAAACTCTTACAACTTTACGGCGGTAGCGCGAACAGAGAACAAACTGTAATCGGTCCGCAGTGGAAGAAATGTGACTATGATGTGTAAATATGCGGTATT</canonical_amplicon>
		<polymorphic_amplicon>GTCCAATGTACAAACCCTAAATAGAGTATTTTTCACGGAAAAAAAGTACTTTTCGTATAGATCATCCTCTCTTCACATGACCGATGCGTGCCCGCTCGAAAACCACAAAACACTCAAAAGTGAACCTGGTGAATCGGAAAGAAGAGATAAAAACTCTTACAACTTYACGGCGGTAGCGCGAACAGAGAACAAACTGTAATCGGTCCGCAGTGGAAGAAATGTGACTATGATGTGTAAATATGCGGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18737</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>611073</contig_pos>
        <strand>+</strand>
        <context>TAATCGGTCC[A/G]CAGTGGAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTACAACTTTACGGCGGTAGCGCGAACAGAGAACAAACTGTAATCGGTCC</left_flank>
        <right_flank>CAGTGGAAGAAATGTGACTATGATGTGTAAATATGCGGTATTATTTGAGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAAAACGTGAAGAATCTTGTAAGGGTCCCTCAAAAATCCAGCATTAATTTTTTATTCTAATCCTTGTAGGATCACTATCAAATCCTTTTCTTCCAGTCTTATGTTTATCTTTTGTTTCTTAAAAATCCATTTTTCTAATTATTCTTATTGGTCAAACACTTGATATTTTTCCACTAATCCTCAACCACCCTCACCAGATTATGCGAGGGTGGATTTGAATTGGTTATGCTTTCGCTAAGACAGCAATCATTTCCGTTTTACTGACTTCATTTTCCAGCCTGACCAGCTTATGTCCAATGTACAAACCCTAAATAGAGTATTTTTCACGGAAAAAAAGTACTTTTCGTATAGATCATCCTCTCTTCACATGACCGATGCGTGCCCGCTCGAAAACCACAAAACACTCAAAAGTGAACCTGGTGAATCGGAAAGAAGAGATAAAAACTCTTACAACTTTACGGCGGTAGCGCGAACAGAGAACAAACTGTAATCGGTCCGCAGTGGAAGAAATGTGACTATGATGTGTAAATATGCGGTATTATTTGAGGGCACCTATAGCGTAGTCTTACGGAGGTTATGAAAAAATGAATGCTTTCTTGGAAAAGTGCAAGGAGAGGGATGATAAAAACAAAAATGATGAAATCTCAACAATAAAATGATATGAACGAGTTGTGGAAAAACAGTTATGATCCACTTAAAAGTTCGGTCATTTTGACTATAGTCAGTAGCCTGAAGCTTGGCTTGCATGTGTCCGATCACTTTGAAAATTTTGGAGGTTGTAATACAGACCTAGATTTAAAACTCTGTTTTCACAGAATTTTTTGAAAATTCCTCGTTTTTCAGCTATTTGCTGATTTCTGGAAGACACCCCTTTTTGACCCGTTTTTGTACTGGAAGCGTGAAAAAATAAGTGTTTTTCAAAAATCGGCCAATAGCTGAAAAACTAAGTATTTTTAAATGTCAAGTGTTCAAACTAGGTCTGTTTTACACACTCCAAA</canonical>
            <polymorphic>AACAAAACGTGAAGAATCTTGTAAGGGTCCCTCAAAAATCCAGCATTAATTTTTTATTCTAATCCTTGTAGGATCACTATCAAATCCTTTTCTTCCAGTCTTATGTTTATCTTTTGTTTCTTAAAAATCCATTTTTCTAATTATTCTTATTGGTCAAACACTTGATATTTTTCCACTAATCCTCAACCACCCTCACCAGATTATGCGAGGGTGGATTTGAATTGGTTATGCTTTCGCTAAGACAGCAATCATTTCCGTTTTACTGACTTCATTTTCCAGCCTGACCAGCTTATGTCCAATGTACAAACCCTAAATAGAGTATTTTTCACGGAAAAAAAGTACTTTTCGTATAGATCATCCTCTCTTCACATGACCGATGCGTGCCCGCTCGAAAACCACAAAACACTCAAAAGTGAACCTGGTGAATCGGAAAGAAGAGATAAAAACTCTTACAACTTTACGGCGGTAGCGCGAACAGAGAACAAACTGTAATCGGTCCRCAGTGGAAGAAATGTGACTATGATGTGTAAATATGCGGTATTATTTGAGGGCACCTATAGCGTAGTCTTACGGAGGTTATGAAAAAATGAATGCTTTCTTGGAAAAGTGCAAGGAGAGGGATGATAAAAACAAAAATGATGAAATCTCAACAATAAAATGATATGAACGAGTTGTGGAAAAACAGTTATGATCCACTTAAAAGTTCGGTCATTTTGACTATAGTCAGTAGCCTGAAGCTTGGCTTGCATGTGTCCGATCACTTTGAAAATTTTGGAGGTTGTAATACAGACCTAGATTTAAAACTCTGTTTTCACAGAATTTTTTGAAAATTCCTCGTTTTTCAGCTATTTGCTGATTTCTGGAAGACACCCCTTTTTGACCCGTTTTTGTACTGGAAGCGTGAAAAAATAAGTGTTTTTCAAAAATCGGCCAATAGCTGAAAAACTAAGTATTTTTAAATGTCAAGTGTTCAAACTAGGTCTGTTTTACACACTCCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>502 385 77 36</canonical_bands>
                <polymorphic_bands>538 385 77</polymorphic_bands>
            </assay>
            <assay>
                <site>CGGWCCG</site>
                <isoschizomers>
                    <enzyme>CpoI</enzyme>
                    <enzyme>CspI</enzyme>
                    <enzyme>Rsr2I</enzyme>
                    <enzyme>RsrII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGGAAAGAAGAGATAAAAACTC</pcr_primer_p1>
		<pcr_primer_p2>CACAACTCGTTCATATCATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCGGAAAGAAGAGATAAAAACTCTTACAACTTTACGGCGGTAGCGCGAACAGAGAACAAACTGTAATCGGTCCGCAGTGGAAGAAATGTGACTATGATGTGTAAATATGCGGTATTATTTGAGGGCACCTATAGCGTAGTCTTACGGAGGTTATGAAAAAATGAATGCTTTCTTGGAAAAGTGCAAGGAGAGGGATGATAAAAACAAAAATGATGAAATCTCAACAATAAAATGATATGAACGAGTTGTG</canonical_amplicon>
		<polymorphic_amplicon>TCGGAAAGAAGAGATAAAAACTCTTACAACTTTACGGCGGTAGCGCGAACAGAGAACAAACTGTAATCGGTCCRCAGTGGAAGAAATGTGACTATGATGTGTAAATATGCGGTATTATTTGAGGGCACCTATAGCGTAGTCTTACGGAGGTTATGAAAAAATGAATGCTTTCTTGGAAAAGTGCAAGGAGAGGGATGATAAAAACAAAAATGATGAAATCTCAACAATAAAATGATATGAACGAGTTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18738</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>612583</contig_pos>
        <strand>+</strand>
        <context>TGAGGGGTGG[A/T]TGGGAAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAATCATCAGCAGATCAGCCATTGTATTATATTGAGTCGTGAGGGGTGG</left_flank>
        <right_flank>TGGGAAAAAAAAGTCAGAGTGATCTATGAAGTTTACAACACAGCCAAAAA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCACTTTCCCTTATCTCTACCCAACTACCACGTGACTCCAACCTTTCCTTACGAATGACGATAATGACAGTTCTTTGGCTACTATGCTATACAACTTGAGAAGGTGCAAAGTTGACAAGAGACTCAAATGTGAACTTTGCTTACTCTTTCTCTTTGATTAGCAATAGATTACGCACTACGCTAAAGTTGGATTTGATTTTTTTTTTCATTTAATTCAATATTCAATCATCTCCAATATTCTCGGAATGTGTACCTCAACTCTGTTTTTTGCTCAACAAAGGACCTTGCGAAGTGACAGGAATCAGCAAAAACGTGTTGTCAGCATGATTCAGCAGACTTCAACAACACACAGATCATTTATTGATATAGACACGTTGCATCAGCCGACGAATCGAGTACGCCCTGGGTGTCTGACACGCTTGCAGTATCTGACGAAATCATCCCGCGAAATCATCAGCAGATCAGCCATTGTATTATATTGAGTCGTGAGGGGTGGTTGGGAAAAAAAAGTCAGAGTGATCTATGAAGTTTACAACACAGCCAAAAAGTGCTTACGTGAAGAAATCAGGGGTTGCCCCCAGCGGCAGCAGAGGACACGGAATAGAAATCAGGGGTTCAGGAAATAATATTAGCAGTTTGTCAGATGTTTTAAAAATTGACATTTTTGCAATTCTGTATTCGAATAAACCCAAAATCGAAGACTACCGTAAACACTAATAGAGTGTTCTCCTTAACCTTCAACTTTGAGCCAATTTATCTCGGTTCTTTTGAAAAGATATCAAAAGTAGTCAACTGCTAAAATGTTGGTTCTTTCATGAATAACATTTTCTCGGTAGACTTCGTTTTGAAATCTTCAACAGGAACCGAATTAAAATGGCTCAAAGTTGACGGCTTTCTCGAGTGATAAACTAATTACTAACTCGGTTTATCCTTCATCTCCCAATTACTACAAATGTATGTCCCTGTTATATCTCCTAGTTTCATAGACATTTCACGT</canonical>
            <polymorphic>ATTTCACTTTCCCTTATCTCTACCCAACTACCACGTGACTCCAACCTTTCCTTACGAATGACGATAATGACAGTTCTTTGGCTACTATGCTATACAACTTGAGAAGGTGCAAAGTTGACAAGAGACTCAAATGTGAACTTTGCTTACTCTTTCTCTTTGATTAGCAATAGATTACGCACTACGCTAAAGTTGGATTTGATTTTTTTTTTCATTTAATTCAATATTCAATCATCTCCAATATTCTCGGAATGTGTACCTCAACTCTGTTTTTTGCTCAACAAAGGACCTTGCGAAGTGACAGGAATCAGCAAAAACGTGTTGTCAGCATGATTCAGCAGACTTCAACAACACACAGATCATTTATTGATATAGACACGTTGCATCAGCCGACGAATCGAGTACGCCCTGGGTGTCTGACACGCTTGCAGTATCTGACGAAATCATCCCGCGAAATCATCAGCAGATCAGCCATTGTATTATATTGAGTCGTGAGGGGTGGWTGGGAAAAAAAAGTCAGAGTGATCTATGAAGTTTACAACACAGCCAAAAAGTGCTTACGTGAAGAAATCAGGGGTTGCCCCCAGCGGCAGCAGAGGACACGGAATAGAAATCAGGGGTTCAGGAAATAATATTAGCAGTTTGTCAGATGTTTTAAAAATTGACATTTTTGCAATTCTGTATTCGAATAAACCCAAAATCGAAGACTACCGTAAACACTAATAGAGTGTTCTCCTTAACCTTCAACTTTGAGCCAATTTATCTCGGTTCTTTTGAAAAGATATCAAAAGTAGTCAACTGCTAAAATGTTGGTTCTTTCATGAATAACATTTTCTCGGTAGACTTCGTTTTGAAATCTTCAACAGGAACCGAATTAAAATGGCTCAAAGTTGACGGCTTTCTCGAGTGATAAACTAATTACTAACTCGGTTTATCCTTCATCTCCCAATTACTACAAATGTATGTCCCTGTTATATCTCCTAGTTTCATAGACATTTCACGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGATTCAGCAGACTTCAAC</pcr_primer_p1>
		<pcr_primer_p2>GATTTCTTCACGTAAGCACTTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CATGATTCAGCAGACTTCAACAACACACAGATCATTTATTGATATAGACACGTTGCATCAGCCGACGAATCGAGTACGCCCTGGGTGTCTGACACGCTTGCAGTATCTGACGAAATCATCCCGCGAAATCATCAGCAGATCAGCCATTGTATTATATTGAGTCGTGAGGGGTGGTTGGGAAAAAAAAGTCAGAGTGATCTATGAAGTTTACAACACAGCCAAAAAGTGCTTACGTGAAGAAATC</canonical_amplicon>
		<polymorphic_amplicon>CATGATTCAGCAGACTTCAACAACACACAGATCATTTATTGATATAGACACGTTGCATCAGCCGACGAATCGAGTACGCCCTGGGTGTCTGACACGCTTGCAGTATCTGACGAAATCATCCCGCGAAATCATCAGCAGATCAGCCATTGTATTATATTGAGTCGTGAGGGGTGGWTGGGAAAAAAAAGTCAGAGTGATCTATGAAGTTTACAACACAGCCAAAAAGTGCTTACGTGAAGAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18739</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>612571</contig_pos>
        <strand>+</strand>
        <context>TATATTGAGT[C/G]GTGAGGGGTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAATCATCCCGCGAAATCATCAGCAGATCAGCCATTGTATTATATTGAGT</left_flank>
        <right_flank>GTGAGGGGTGGTTGGGAAAAAAAAGTCAGAGTGATCTATGAAGTTTACAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAATCAGTTTCATTTCACTTTCCCTTATCTCTACCCAACTACCACGTGACTCCAACCTTTCCTTACGAATGACGATAATGACAGTTCTTTGGCTACTATGCTATACAACTTGAGAAGGTGCAAAGTTGACAAGAGACTCAAATGTGAACTTTGCTTACTCTTTCTCTTTGATTAGCAATAGATTACGCACTACGCTAAAGTTGGATTTGATTTTTTTTTTCATTTAATTCAATATTCAATCATCTCCAATATTCTCGGAATGTGTACCTCAACTCTGTTTTTTGCTCAACAAAGGACCTTGCGAAGTGACAGGAATCAGCAAAAACGTGTTGTCAGCATGATTCAGCAGACTTCAACAACACACAGATCATTTATTGATATAGACACGTTGCATCAGCCGACGAATCGAGTACGCCCTGGGTGTCTGACACGCTTGCAGTATCTGACGAAATCATCCCGCGAAATCATCAGCAGATCAGCCATTGTATTATATTGAGTCGTGAGGGGTGGTTGGGAAAAAAAAGTCAGAGTGATCTATGAAGTTTACAACACAGCCAAAAAGTGCTTACGTGAAGAAATCAGGGGTTGCCCCCAGCGGCAGCAGAGGACACGGAATAGAAATCAGGGGTTCAGGAAATAATATTAGCAGTTTGTCAGATGTTTTAAAAATTGACATTTTTGCAATTCTGTATTCGAATAAACCCAAAATCGAAGACTACCGTAAACACTAATAGAGTGTTCTCCTTAACCTTCAACTTTGAGCCAATTTATCTCGGTTCTTTTGAAAAGATATCAAAAGTAGTCAACTGCTAAAATGTTGGTTCTTTCATGAATAACATTTTCTCGGTAGACTTCGTTTTGAAATCTTCAACAGGAACCGAATTAAAATGGCTCAAAGTTGACGGCTTTCTCGAGTGATAAACTAATTACTAACTCGGTTTATCCTTCATCTCCCAATTACTACAAATGTATGTCCCTGTTATATCTCCTAGTTTCATA</canonical>
            <polymorphic>TCAATCAGTTTCATTTCACTTTCCCTTATCTCTACCCAACTACCACGTGACTCCAACCTTTCCTTACGAATGACGATAATGACAGTTCTTTGGCTACTATGCTATACAACTTGAGAAGGTGCAAAGTTGACAAGAGACTCAAATGTGAACTTTGCTTACTCTTTCTCTTTGATTAGCAATAGATTACGCACTACGCTAAAGTTGGATTTGATTTTTTTTTTCATTTAATTCAATATTCAATCATCTCCAATATTCTCGGAATGTGTACCTCAACTCTGTTTTTTGCTCAACAAAGGACCTTGCGAAGTGACAGGAATCAGCAAAAACGTGTTGTCAGCATGATTCAGCAGACTTCAACAACACACAGATCATTTATTGATATAGACACGTTGCATCAGCCGACGAATCGAGTACGCCCTGGGTGTCTGACACGCTTGCAGTATCTGACGAAATCATCCCGCGAAATCATCAGCAGATCAGCCATTGTATTATATTGAGTSGTGAGGGGTGGTTGGGAAAAAAAAGTCAGAGTGATCTATGAAGTTTACAACACAGCCAAAAAGTGCTTACGTGAAGAAATCAGGGGTTGCCCCCAGCGGCAGCAGAGGACACGGAATAGAAATCAGGGGTTCAGGAAATAATATTAGCAGTTTGTCAGATGTTTTAAAAATTGACATTTTTGCAATTCTGTATTCGAATAAACCCAAAATCGAAGACTACCGTAAACACTAATAGAGTGTTCTCCTTAACCTTCAACTTTGAGCCAATTTATCTCGGTTCTTTTGAAAAGATATCAAAAGTAGTCAACTGCTAAAATGTTGGTTCTTTCATGAATAACATTTTCTCGGTAGACTTCGTTTTGAAATCTTCAACAGGAACCGAATTAAAATGGCTCAAAGTTGACGGCTTTCTCGAGTGATAAACTAATTACTAACTCGGTTTATCCTTCATCTCCCAATTACTACAAATGTATGTCCCTGTTATATCTCCTAGTTTCATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>504 178 92 87 63 49 27</canonical_bands>
                <polymorphic_bands>596 178 87 63 49 27</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>500 197 132 89 82</canonical_bands>
                <polymorphic_bands>632 197 89 82</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGACAGGAATCAGCAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GGCTGTGTTGTAAACTTCATAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGACAGGAATCAGCAAAAACGTGTTGTCAGCATGATTCAGCAGACTTCAACAACACACAGATCATTTATTGATATAGACACGTTGCATCAGCCGACGAATCGAGTACGCCCTGGGTGTCTGACACGCTTGCAGTATCTGACGAAATCATCCCGCGAAATCATCAGCAGATCAGCCATTGTATTATATTGAGTCGTGAGGGGTGGTTGGGAAAAAAAAGTCAGAGTGATCTATGAAGTTTACAACACAGCC</canonical_amplicon>
		<polymorphic_amplicon>TGACAGGAATCAGCAAAAACGTGTTGTCAGCATGATTCAGCAGACTTCAACAACACACAGATCATTTATTGATATAGACACGTTGCATCAGCCGACGAATCGAGTACGCCCTGGGTGTCTGACACGCTTGCAGTATCTGACGAAATCATCCCGCGAAATCATCAGCAGATCAGCCATTGTATTATATTGAGTSGTGAGGGGTGGTTGGGAAAAAAAAGTCAGAGTGATCTATGAAGTTTACAACACAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18740</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>612559</contig_pos>
        <strand>+</strand>
        <context>CAGCCATTGY[A/G]TTATATTGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGTATCTGACGAAATCATCCCGCGAAATCATCAGCAGATCAGCCATTGT</left_flank>
        <right_flank>TTATATTGAGTCGTGAGGGGTGGTTGGGAAAAAAAAGTCAGAGTGATCTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCATCTTTCATCAATCAGTTTCATTTCACTTTCCCTTATCTCTACCCAACTACCACGTGACTCCAACCTTTCCTTACGAATGACGATAATGACAGTTCTTTGGCTACTATGCTATACAACTTGAGAAGGTGCAAAGTTGACAAGAGACTCAAATGTGAACTTTGCTTACTCTTTCTCTTTGATTAGCAATAGATTACGCACTACGCTAAAGTTGGATTTGATTTTTTTTTTCATTTAATTCAATATTCAATCATCTCCAATATTCTCGGAATGTGTACCTCAACTCTGTTTTTTGCTCAACAAAGGACCTTGCGAAGTGACAGGAATCAGCAAAAACGTGTTGTCAGCATGATTCAGCAGACTTCAACAACACACAGATCATTTATTGATATAGACACGTTGCATCAGCCGACGAATCGAGTACGCCCTGGGTGTCTGACACGCTTGCAGTATCTGACGAAATCATCCCGCGAAATCATCAGCAGATCAGCCATTGTATTATATTGAGTCGTGAGGGGTGGTTGGGAAAAAAAAGTCAGAGTGATCTATGAAGTTTACAACACAGCCAAAAAGTGCTTACGTGAAGAAATCAGGGGTTGCCCCCAGCGGCAGCAGAGGACACGGAATAGAAATCAGGGGTTCAGGAAATAATATTAGCAGTTTGTCAGATGTTTTAAAAATTGACATTTTTGCAATTCTGTATTCGAATAAACCCAAAATCGAAGACTACCGTAAACACTAATAGAGTGTTCTCCTTAACCTTCAACTTTGAGCCAATTTATCTCGGTTCTTTTGAAAAGATATCAAAAGTAGTCAACTGCTAAAATGTTGGTTCTTTCATGAATAACATTTTCTCGGTAGACTTCGTTTTGAAATCTTCAACAGGAACCGAATTAAAATGGCTCAAAGTTGACGGCTTTCTCGAGTGATAAACTAATTACTAACTCGGTTTATCCTTCATCTCCCAATTACTACAAATGTATGTCCCTGTTATATCT</canonical>
            <polymorphic>GTTCATCTTTCATCAATCAGTTTCATTTCACTTTCCCTTATCTCTACCCAACTACCACGTGACTCCAACCTTTCCTTACGAATGACGATAATGACAGTTCTTTGGCTACTATGCTATACAACTTGAGAAGGTGCAAAGTTGACAAGAGACTCAAATGTGAACTTTGCTTACTCTTTCTCTTTGATTAGCAATAGATTACGCACTACGCTAAAGTTGGATTTGATTTTTTTTTTCATTTAATTCAATATTCAATCATCTCCAATATTCTCGGAATGTGTACCTCAACTCTGTTTTTTGCTCAACAAAGGACCTTGCGAAGTGACAGGAATCAGCAAAAACGTGTTGTCAGCATGATTCAGCAGACTTCAACAACACACAGATCATTTATTGATATAGACACGTTGCATCAGCCGACGAATCGAGTACGCCCTGGGTGTCTGACACGCTTGCAGTATCTGACGAAATCATCCCGCGAAATCATCAGCAGATCAGCCATTGTRTTATATTGAGTCGTGAGGGGTGGTTGGGAAAAAAAAGTCAGAGTGATCTATGAAGTTTACAACACAGCCAAAAAGTGCTTACGTGAAGAAATCAGGGGTTGCCCCCAGCGGCAGCAGAGGACACGGAATAGAAATCAGGGGTTCAGGAAATAATATTAGCAGTTTGTCAGATGTTTTAAAAATTGACATTTTTGCAATTCTGTATTCGAATAAACCCAAAATCGAAGACTACCGTAAACACTAATAGAGTGTTCTCCTTAACCTTCAACTTTGAGCCAATTTATCTCGGTTCTTTTGAAAAGATATCAAAAGTAGTCAACTGCTAAAATGTTGGTTCTTTCATGAATAACATTTTCTCGGTAGACTTCGTTTTGAAATCTTCAACAGGAACCGAATTAAAATGGCTCAAAGTTGACGGCTTTCTCGAGTGATAAACTAATTACTAACTCGGTTTATCCTTCATCTCCCAATTACTACAAATGTATGTCCCTGTTATATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACAGGAATCAGCAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GGCTGTGTTGTAAACTTCATAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGACAGGAATCAGCAAAAACGTGTTGTCAGCATGATTCAGCAGACTTCAACAACACACAGATCATTTATTGATATAGACACGTTGCATCAGCCGACGAATCGAGTACGCCCTGGGTGTCTGACACGCTTGCAGTATCTGACGAAATCATCCCGCGAAATCATCAGCAGATCAGCCATTGTATTATATTGAGTCGTGAGGGGTGGTTGGGAAAAAAAAGTCAGAGTGATCTATGAAGTTTACAACACAGCC</canonical_amplicon>
		<polymorphic_amplicon>TGACAGGAATCAGCAAAAACGTGTTGTCAGCATGATTCAGCAGACTTCAACAACACACAGATCATTTATTGATATAGACACGTTGCATCAGCCGACGAATCGAGTACGCCCTGGGTGTCTGACACGCTTGCAGTATCTGACGAAATCATCCCGCGAAATCATCAGCAGATCAGCCATTGTRTTATATTGAGTCGTGAGGGGTGGTTGGGAAAAAAAAGTCAGAGTGATCTATGAAGTTTACAACACAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18741</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>612558</contig_pos>
        <strand>+</strand>
        <context>TCAGCCATTG[C/T]RTTATATTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCAGTATCTGACGAAATCATCCCGCGAAATCATCAGCAGATCAGCCATTG</left_flank>
        <right_flank>ATTATATTGAGTCGTGAGGGGTGGTTGGGAAAAAAAAGTCAGAGTGATCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTCATCTTTCATCAATCAGTTTCATTTCACTTTCCCTTATCTCTACCCAACTACCACGTGACTCCAACCTTTCCTTACGAATGACGATAATGACAGTTCTTTGGCTACTATGCTATACAACTTGAGAAGGTGCAAAGTTGACAAGAGACTCAAATGTGAACTTTGCTTACTCTTTCTCTTTGATTAGCAATAGATTACGCACTACGCTAAAGTTGGATTTGATTTTTTTTTTCATTTAATTCAATATTCAATCATCTCCAATATTCTCGGAATGTGTACCTCAACTCTGTTTTTTGCTCAACAAAGGACCTTGCGAAGTGACAGGAATCAGCAAAAACGTGTTGTCAGCATGATTCAGCAGACTTCAACAACACACAGATCATTTATTGATATAGACACGTTGCATCAGCCGACGAATCGAGTACGCCCTGGGTGTCTGACACGCTTGCAGTATCTGACGAAATCATCCCGCGAAATCATCAGCAGATCAGCCATTGTATTATATTGAGTCGTGAGGGGTGGTTGGGAAAAAAAAGTCAGAGTGATCTATGAAGTTTACAACACAGCCAAAAAGTGCTTACGTGAAGAAATCAGGGGTTGCCCCCAGCGGCAGCAGAGGACACGGAATAGAAATCAGGGGTTCAGGAAATAATATTAGCAGTTTGTCAGATGTTTTAAAAATTGACATTTTTGCAATTCTGTATTCGAATAAACCCAAAATCGAAGACTACCGTAAACACTAATAGAGTGTTCTCCTTAACCTTCAACTTTGAGCCAATTTATCTCGGTTCTTTTGAAAAGATATCAAAAGTAGTCAACTGCTAAAATGTTGGTTCTTTCATGAATAACATTTTCTCGGTAGACTTCGTTTTGAAATCTTCAACAGGAACCGAATTAAAATGGCTCAAAGTTGACGGCTTTCTCGAGTGATAAACTAATTACTAACTCGGTTTATCCTTCATCTCCCAATTACTACAAATGTATGTCCCTGTTATATC</canonical>
            <polymorphic>TGTTCATCTTTCATCAATCAGTTTCATTTCACTTTCCCTTATCTCTACCCAACTACCACGTGACTCCAACCTTTCCTTACGAATGACGATAATGACAGTTCTTTGGCTACTATGCTATACAACTTGAGAAGGTGCAAAGTTGACAAGAGACTCAAATGTGAACTTTGCTTACTCTTTCTCTTTGATTAGCAATAGATTACGCACTACGCTAAAGTTGGATTTGATTTTTTTTTTCATTTAATTCAATATTCAATCATCTCCAATATTCTCGGAATGTGTACCTCAACTCTGTTTTTTGCTCAACAAAGGACCTTGCGAAGTGACAGGAATCAGCAAAAACGTGTTGTCAGCATGATTCAGCAGACTTCAACAACACACAGATCATTTATTGATATAGACACGTTGCATCAGCCGACGAATCGAGTACGCCCTGGGTGTCTGACACGCTTGCAGTATCTGACGAAATCATCCCGCGAAATCATCAGCAGATCAGCCATTGYATTATATTGAGTCGTGAGGGGTGGTTGGGAAAAAAAAGTCAGAGTGATCTATGAAGTTTACAACACAGCCAAAAAGTGCTTACGTGAAGAAATCAGGGGTTGCCCCCAGCGGCAGCAGAGGACACGGAATAGAAATCAGGGGTTCAGGAAATAATATTAGCAGTTTGTCAGATGTTTTAAAAATTGACATTTTTGCAATTCTGTATTCGAATAAACCCAAAATCGAAGACTACCGTAAACACTAATAGAGTGTTCTCCTTAACCTTCAACTTTGAGCCAATTTATCTCGGTTCTTTTGAAAAGATATCAAAAGTAGTCAACTGCTAAAATGTTGGTTCTTTCATGAATAACATTTTCTCGGTAGACTTCGTTTTGAAATCTTCAACAGGAACCGAATTAAAATGGCTCAAAGTTGACGGCTTTCTCGAGTGATAAACTAATTACTAACTCGGTTTATCCTTCATCTCCCAATTACTACAAATGTATGTCCCTGTTATATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACAGGAATCAGCAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GGCTGTGTTGTAAACTTCATAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGACAGGAATCAGCAAAAACGTGTTGTCAGCATGATTCAGCAGACTTCAACAACACACAGATCATTTATTGATATAGACACGTTGCATCAGCCGACGAATCGAGTACGCCCTGGGTGTCTGACACGCTTGCAGTATCTGACGAAATCATCCCGCGAAATCATCAGCAGATCAGCCATTGTATTATATTGAGTCGTGAGGGGTGGTTGGGAAAAAAAAGTCAGAGTGATCTATGAAGTTTACAACACAGCC</canonical_amplicon>
		<polymorphic_amplicon>TGACAGGAATCAGCAAAAACGTGTTGTCAGCATGATTCAGCAGACTTCAACAACACACAGATCATTTATTGATATAGACACGTTGCATCAGCCGACGAATCGAGTACGCCCTGGGTGTCTGACACGCTTGCAGTATCTGACGAAATCATCCCGCGAAATCATCAGCAGATCAGCCATTGYATTATATTGAGTCGTGAGGGGTGGTTGGGAAAAAAAAGTCAGAGTGATCTATGAAGTTTACAACACAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18742</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>612456</contig_pos>
        <strand>+</strand>
        <context>ATTGATATAG[A/G]CACGTTGCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGCATGATTCAGCAGACTTCAACAACACACAGATCATTTATTGATATAG</left_flank>
        <right_flank>CACGTTGCATCAGCCGACGAATCGAGTACGCCCTGGGTGTCTGACACGCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATTCTTTAGAAGCACTCAAACCCTGACCAATGAAACATTTTTTTCAAATGTATTCCCTTTTCAGACTCCCTTATCATCATTCAATCCATTTTTGTTATTTTGTTCATCTTTCATCAATCAGTTTCATTTCACTTTCCCTTATCTCTACCCAACTACCACGTGACTCCAACCTTTCCTTACGAATGACGATAATGACAGTTCTTTGGCTACTATGCTATACAACTTGAGAAGGTGCAAAGTTGACAAGAGACTCAAATGTGAACTTTGCTTACTCTTTCTCTTTGATTAGCAATAGATTACGCACTACGCTAAAGTTGGATTTGATTTTTTTTTTCATTTAATTCAATATTCAATCATCTCCAATATTCTCGGAATGTGTACCTCAACTCTGTTTTTTGCTCAACAAAGGACCTTGCGAAGTGACAGGAATCAGCAAAAACGTGTTGTCAGCATGATTCAGCAGACTTCAACAACACACAGATCATTTATTGATATAGACACGTTGCATCAGCCGACGAATCGAGTACGCCCTGGGTGTCTGACACGCTTGCAGTATCTGACGAAATCATCCCGCGAAATCATCAGCAGATCAGCCATTGTATTATATTGAGTCGTGAGGGGTGGTTGGGAAAAAAAAGTCAGAGTGATCTATGAAGTTTACAACACAGCCAAAAAGTGCTTACGTGAAGAAATCAGGGGTTGCCCCCAGCGGCAGCAGAGGACACGGAATAGAAATCAGGGGTTCAGGAAATAATATTAGCAGTTTGTCAGATGTTTTAAAAATTGACATTTTTGCAATTCTGTATTCGAATAAACCCAAAATCGAAGACTACCGTAAACACTAATAGAGTGTTCTCCTTAACCTTCAACTTTGAGCCAATTTATCTCGGTTCTTTTGAAAAGATATCAAAAGTAGTCAACTGCTAAAATGTTGGTTCTTTCATGAATAACATTTTCTCGGTAGACTTCGTTTTGAAATCTTCAACAGGAACCGAATT</canonical>
            <polymorphic>CAATTCTTTAGAAGCACTCAAACCCTGACCAATGAAACATTTTTTTCAAATGTATTCCCTTTTCAGACTCCCTTATCATCATTCAATCCATTTTTGTTATTTTGTTCATCTTTCATCAATCAGTTTCATTTCACTTTCCCTTATCTCTACCCAACTACCACGTGACTCCAACCTTTCCTTACGAATGACGATAATGACAGTTCTTTGGCTACTATGCTATACAACTTGAGAAGGTGCAAAGTTGACAAGAGACTCAAATGTGAACTTTGCTTACTCTTTCTCTTTGATTAGCAATAGATTACGCACTACGCTAAAGTTGGATTTGATTTTTTTTTTCATTTAATTCAATATTCAATCATCTCCAATATTCTCGGAATGTGTACCTCAACTCTGTTTTTTGCTCAACAAAGGACCTTGCGAAGTGACAGGAATCAGCAAAAACGTGTTGTCAGCATGATTCAGCAGACTTCAACAACACACAGATCATTTATTGATATAGRCACGTTGCATCAGCCGACGAATCGAGTACGCCCTGGGTGTCTGACACGCTTGCAGTATCTGACGAAATCATCCCGCGAAATCATCAGCAGATCAGCCATTGTATTATATTGAGTCGTGAGGGGTGGTTGGGAAAAAAAAGTCAGAGTGATCTATGAAGTTTACAACACAGCCAAAAAGTGCTTACGTGAAGAAATCAGGGGTTGCCCCCAGCGGCAGCAGAGGACACGGAATAGAAATCAGGGGTTCAGGAAATAATATTAGCAGTTTGTCAGATGTTTTAAAAATTGACATTTTTGCAATTCTGTATTCGAATAAACCCAAAATCGAAGACTACCGTAAACACTAATAGAGTGTTCTCCTTAACCTTCAACTTTGAGCCAATTTATCTCGGTTCTTTTGAAAAGATATCAAAAGTAGTCAACTGCTAAAATGTTGGTTCTTTCATGAATAACATTTTCTCGGTAGACTTCGTTTTGAAATCTTCAACAGGAACCGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 441 59</canonical_bands>
                <polymorphic_bands>559 441</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGACAGGAATCAGCAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GGCTGTGTTGTAAACTTCATAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGACAGGAATCAGCAAAAACGTGTTGTCAGCATGATTCAGCAGACTTCAACAACACACAGATCATTTATTGATATAGACACGTTGCATCAGCCGACGAATCGAGTACGCCCTGGGTGTCTGACACGCTTGCAGTATCTGACGAAATCATCCCGCGAAATCATCAGCAGATCAGCCATTGTATTATATTGAGTCGTGAGGGGTGGTTGGGAAAAAAAAGTCAGAGTGATCTATGAAGTTTACAACACAGCC</canonical_amplicon>
		<polymorphic_amplicon>TGACAGGAATCAGCAAAAACGTGTTGTCAGCATGATTCAGCAGACTTCAACAACACACAGATCATTTATTGATATAGRCACGTTGCATCAGCCGACGAATCGAGTACGCCCTGGGTGTCTGACACGCTTGCAGTATCTGACGAAATCATCCCGCGAAATCATCAGCAGATCAGCCATTGTATTATATTGAGTCGTGAGGGGTGGTTGGGAAAAAAAAGTCAGAGTGATCTATGAAGTTTACAACACAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18743</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>612245</contig_pos>
        <strand>+</strand>
        <context>TCTCTTTGAT[C/T]AGCAATAGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGTTGACAAGAGACTCAAATGTGAACTTTGCTTACTCTTTCTCTTTGAT</left_flank>
        <right_flank>AGCAATAGATTACGCACTACGCTAAAGTTGGATTTGATTTTTTTTTTCAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATATGGACACTATACTGTACACCGTCATTTCAGAATGCCTAGCGTGATTCCAAAAATTATAGTCTGCACTTTTTTGGAACTTTCATGATCACTCATTTGTAGGATTACACAATATTATACCCTTAGAACAATTCGATTCAAATTTTAAAATTTCGTATTACCGATTATGATCTCAAACTACGCAAGTCCCGAAAACTTCATACGGAAGCCAATTCTTTAGAAGCACTCAAACCCTGACCAATGAAACATTTTTTTCAAATGTATTCCCTTTTCAGACTCCCTTATCATCATTCAATCCATTTTTGTTATTTTGTTCATCTTTCATCAATCAGTTTCATTTCACTTTCCCTTATCTCTACCCAACTACCACGTGACTCCAACCTTTCCTTACGAATGACGATAATGACAGTTCTTTGGCTACTATGCTATACAACTTGAGAAGGTGCAAAGTTGACAAGAGACTCAAATGTGAACTTTGCTTACTCTTTCTCTTTGATTAGCAATAGATTACGCACTACGCTAAAGTTGGATTTGATTTTTTTTTTCATTTAATTCAATATTCAATCATCTCCAATATTCTCGGAATGTGTACCTCAACTCTGTTTTTTGCTCAACAAAGGACCTTGCGAAGTGACAGGAATCAGCAAAAACGTGTTGTCAGCATGATTCAGCAGACTTCAACAACACACAGATCATTTATTGATATAGACACGTTGCATCAGCCGACGAATCGAGTACGCCCTGGGTGTCTGACACGCTTGCAGTATCTGACGAAATCATCCCGCGAAATCATCAGCAGATCAGCCATTGTATTATATTGAGTCGTGAGGGGTGGTTGGGAAAAAAAAGTCAGAGTGATCTATGAAGTTTACAACACAGCCAAAAAGTGCTTACGTGAAGAAATCAGGGGTTGCCCCCAGCGGCAGCAGAGGACACGGAATAGAAATCAGGGGTTCAGGAAATAATATTAGCAGTTTGTCAGATGTTTTAAAAATTGA</canonical>
            <polymorphic>CTATATGGACACTATACTGTACACCGTCATTTCAGAATGCCTAGCGTGATTCCAAAAATTATAGTCTGCACTTTTTTGGAACTTTCATGATCACTCATTTGTAGGATTACACAATATTATACCCTTAGAACAATTCGATTCAAATTTTAAAATTTCGTATTACCGATTATGATCTCAAACTACGCAAGTCCCGAAAACTTCATACGGAAGCCAATTCTTTAGAAGCACTCAAACCCTGACCAATGAAACATTTTTTTCAAATGTATTCCCTTTTCAGACTCCCTTATCATCATTCAATCCATTTTTGTTATTTTGTTCATCTTTCATCAATCAGTTTCATTTCACTTTCCCTTATCTCTACCCAACTACCACGTGACTCCAACCTTTCCTTACGAATGACGATAATGACAGTTCTTTGGCTACTATGCTATACAACTTGAGAAGGTGCAAAGTTGACAAGAGACTCAAATGTGAACTTTGCTTACTCTTTCTCTTTGATYAGCAATAGATTACGCACTACGCTAAAGTTGGATTTGATTTTTTTTTTCATTTAATTCAATATTCAATCATCTCCAATATTCTCGGAATGTGTACCTCAACTCTGTTTTTTGCTCAACAAAGGACCTTGCGAAGTGACAGGAATCAGCAAAAACGTGTTGTCAGCATGATTCAGCAGACTTCAACAACACACAGATCATTTATTGATATAGACACGTTGCATCAGCCGACGAATCGAGTACGCCCTGGGTGTCTGACACGCTTGCAGTATCTGACGAAATCATCCCGCGAAATCATCAGCAGATCAGCCATTGTATTATATTGAGTCGTGAGGGGTGGTTGGGAAAAAAAAGTCAGAGTGATCTATGAAGTTTACAACACAGCCAAAAAGTGCTTACGTGAAGAAATCAGGGGTTGCCCCCAGCGGCAGCAGAGGACACGGAATAGAAATCAGGGGTTCAGGAAATAATATTAGCAGTTTGTCAGATGTTTTAAAAATTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAGTTGACAAGAGACTCAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGATCTGTGTGTTGTTGAAGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAGTTGACAAGAGACTCAAATGTGAACTTTGCTTACTCTTTCTCTTTGATTAGCAATAGATTACGCACTACGCTAAAGTTGGATTTGATTTTTTTTTTCATTTAATTCAATATTCAATCATCTCCAATATTCTCGGAATGTGTACCTCAACTCTGTTTTTTGCTCAACAAAGGACCTTGCGAAGTGACAGGAATCAGCAAAAACGTGTTGTCAGCATGATTCAGCAGACTTCAACAACACACAGATCA</canonical_amplicon>
		<polymorphic_amplicon>CAAAGTTGACAAGAGACTCAAATGTGAACTTTGCTTACTCTTTCTCTTTGATYAGCAATAGATTACGCACTACGCTAAAGTTGGATTTGATTTTTTTTTTCATTTAATTCAATATTCAATCATCTCCAATATTCTCGGAATGTGTACCTCAACTCTGTTTTTTGCTCAACAAAGGACCTTGCGAAGTGACAGGAATCAGCAAAAACGTGTTGTCAGCATGATTCAGCAGACTTCAACAACACACAGATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18754</snp_id>
        <super_contig>c011201145.Contig3</super_contig>
        <contig_pos>22909</contig_pos>
        <strand>+</strand>
        <context>TTATTTGAAA[A/G]ATGTACTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCAATTTTGGATTCACAATTTTAACATTATATGGACCAACTTATTTGAAA</left_flank>
        <right_flank>ATGTACTTCATTTTGATGTCAAAGAGACTGGTTTTGCCACGGCGTTGCCT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTAGAAAAGAGCCGAAATTTTCTTAGTGAAGATCGTTTCGGTTGGAATTTCTCATGATAATAGAAAACTTCTATAAAAACCCAAAAAATCCGTAACCACGAATTTCCAGGTGTCTGGGCTGCTGAAAACGAGACTGGAACATTTTTGGCGATTCTCTCGTGTGCTTTTCAATTGAGTATGATTATTTGTATGCCAGTTTCTGGCCTACTCTGTGATTCTGACCTCGGCTGGAGGTCCATTTATTACATTTTTGGAATTCTCACTCTTTTTTCCTATTTTCTATTCTTTTACTTCTATACAGATTCCCCCAGATTTCATAGAAATGTATCGGAAAAGGAATTGAAGAAAATTGAAAGCGGAAAATTAGAAATTTTAAAAGAAGGCGTTCCATATTTTGAAATTTGCACGGATTTAACGGTCCTCATGGCTTGGCTTTCTGTCCTTGGAGGCAATTTTGGATTCACAATTTTAACATTATATGGACCAACTTATTTGAAAAATGTACTTCATTTTGATGTCAAAGAGACTGGTTTTGCCACGGCGTTGCCTTTCATTCTAAGCGCTTTGGTGAAATTCGCAGCTGGGAGGATTTCGGATAAAATGGAGCATTTGTCGGAGAAGGTTGGTTGGGAATTCAGAAGTTCAGCAATTCGGAAAGTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAAGTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAGATCAGAAATTCAGAAATTCAGAAAGTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGAAATTCGGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAGATCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGAAAGTCAGAAATTCAGAAATTCAGA</canonical>
            <polymorphic>ACTAGAAAAGAGCCGAAATTTTCTTAGTGAAGATCGTTTCGGTTGGAATTTCTCATGATAATAGAAAACTTCTATAAAAACCCAAAAAATCCGTAACCACGAATTTCCAGGTGTCTGGGCTGCTGAAAACGAGACTGGAACATTTTTGGCGATTCTCTCGTGTGCTTTTCAATTGAGTATGATTATTTGTATGCCAGTTTCTGGCCTACTCTGTGATTCTGACCTCGGCTGGAGGTCCATTTATTACATTTTTGGAATTCTCACTCTTTTTTCCTATTTTCTATTCTTTTACTTCTATACAGATTCCCCCAGATTTCATAGAAATGTATCGGAAAAGGAATTGAAGAAAATTGAAAGCGGAAAATTAGAAATTTTAAAAGAAGGCGTTCCATATTTTGAAATTTGCACGGATTTAACGGTCCTCATGGCTTGGCTTTCTGTCCTTGGAGGCAATTTTGGATTCACAATTTTAACATTATATGGACCAACTTATTTGAAARATGTACTTCATTTTGATGTCAAAGAGACTGGTTTTGCCACGGCGTTGCCTTTCATTCTAAGCGCTTTGGTGAAATTCGCAGCTGGGAGGATTTCGGATAAAATGGAGCATTTGTCGGAGAAGGTTGGTTGGGAATTCAGAAGTTCAGCAATTCGGAAAGTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAAGTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAGATCAGAAATTCAGAAATTCAGAAAGTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGAAATTCGGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAGATCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGAAAGTCAGAAATTCAGAAATTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCATAGAAATGTATCGGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CAAAGCGCTTAGAATGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTCATAGAAATGTATCGGAAAAGGAATTGAAGAAAATTGAAAGCGGAAAATTAGAAATTTTAAAAGAAGGCGTTCCATATTTTGAAATTTGCACGGATTTAACGGTCCTCATGGCTTGGCTTTCTGTCCTTGGAGGCAATTTTGGATTCACAATTTTAACATTATATGGACCAACTTATTTGAAAAATGTACTTCATTTTGATGTCAAAGAGACTGGTTTTGCCACGGCGTTGCCTTTCATTCTAAGCGCTTTG</canonical_amplicon>
		<polymorphic_amplicon>TTCATAGAAATGTATCGGAAAAGGAATTGAAGAAAATTGAAAGCGGAAAATTAGAAATTTTAAAAGAAGGCGTTCCATATTTTGAAATTTGCACGGATTTAACGGTCCTCATGGCTTGGCTTTCTGTCCTTGGAGGCAATTTTGGATTCACAATTTTAACATTATATGGACCAACTTATTTGAAARATGTACTTCATTTTGATGTCAAAGAGACTGGTTTTGCCACGGCGTTGCCTTTCATTCTAAGCGCTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18755</snp_id>
        <super_contig>c011201145.Contig3</super_contig>
        <contig_pos>22644</contig_pos>
        <strand></strand>
        <context>TCGGCTGGAG[G/T]TCCATTTATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTGTATGCCAGTTTCTGGCCTACTCTGTGATTCTGACCTCGGCTGGAG</left_flank>
        <right_flank>TCCATTTATTACATTTTTGGAATTCTCACTCTTTTTTCCTATTTTCTATT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAACTACTCGCACAGTTCAAATACTAGTACATTATTCCAACATCTGCGCGTTTTTCGTATTTTGGACCTCTAATTTTTTTTCGGACCTCTAAACTTTTTTGGGACCTCTAATTTTTTTTCGGACCTCTAAACTTTTTTGGGACCTCTAATTTTTTTTCGGACCTCTAAACTTTTTTGGGACCTCTAATTTTTTTTTGGACCTCTATTTTATTTTGGGACCTCTAATTTTTTTTCGGACCTCTAAATTTTTTTGGGACCTCTAAACTAGAAAAGAGCCGAAATTTTCTTAGTGAAGATCGTTTCGGTTGGAATTTCTCATGATAATAGAAAACTTCTATAAAAACCCAAAAAATCCGTAACCACGAATTTCCAGGTGTCTGGGCTGCTGAAAACGAGACTGGAACATTTTTGGCGATTCTCTCGTGTGCTTTTCAATTGAGTATGATTATTTGTATGCCAGTTTCTGGCCTACTCTGTGATTCTGACCTCGGCTGGAGGTCCATTTATTACATTTTTGGAATTCTCACTCTTTTTTCCTATTTTCTATTCTTTTACTTCTATACAGATTCCCCCAGATTTCATAGAAATGTATCGGAAAAGGAATTGAAGAAAATTGAAAGCGGAAAATTAGAAATTTTAAAAGAAGGCGTTCCATATTTTGAAATTTGCACGGATTTAACGGTCCTCATGGCTTGGCTTTCTGTCCTTGGAGGCAATTTTGGATTCACAATTTTAACATTATATGGACCAACTTATTTGAAAAATGTACTTCATTTTGATGTCAAAGAGACTGGTTTTGCCACGGCGTTGCCTTTCATTCTAAGCGCTTTGGTGAAATTCGCAGCTGGGAGGATTTCGGATAAAATGGAGCATTTGTCGGAGAAGGTTGGTTGGGAATTCAGAAGTTCAGCAATTCGGAAAGTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAG</canonical>
            <polymorphic>TCAAACTACTCGCACAGTTCAAATACTAGTACATTATTCCAACATCTGCGCGTTTTTCGTATTTTGGACCTCTAATTTTTTTTCGGACCTCTAAACTTTTTTGGGACCTCTAATTTTTTTTCGGACCTCTAAACTTTTTTGGGACCTCTAATTTTTTTTCGGACCTCTAAACTTTTTTGGGACCTCTAATTTTTTTTTGGACCTCTATTTTATTTTGGGACCTCTAATTTTTTTTCGGACCTCTAAATTTTTTTGGGACCTCTAAACTAGAAAAGAGCCGAAATTTTCTTAGTGAAGATCGTTTCGGTTGGAATTTCTCATGATAATAGAAAACTTCTATAAAAACCCAAAAAATCCGTAACCACGAATTTCCAGGTGTCTGGGCTGCTGAAAACGAGACTGGAACATTTTTGGCGATTCTCTCGTGTGCTTTTCAATTGAGTATGATTATTTGTATGCCAGTTTCTGGCCTACTCTGTGATTCTGACCTCGGCTGGAGKTCCATTTATTACATTTTTGGAATTCTCACTCTTTTTTCCTATTTTCTATTCTTTTACTTCTATACAGATTCCCCCAGATTTCATAGAAATGTATCGGAAAAGGAATTGAAGAAAATTGAAAGCGGAAAATTAGAAATTTTAAAAGAAGGCGTTCCATATTTTGAAATTTGCACGGATTTAACGGTCCTCATGGCTTGGCTTTCTGTCCTTGGAGGCAATTTTGGATTCACAATTTTAACATTATATGGACCAACTTATTTGAAAAATGTACTTCATTTTGATGTCAAAGAGACTGGTTTTGCCACGGCGTTGCCTTTCATTCTAAGCGCTTTGGTGAAATTCGCAGCTGGGAGGATTTCGGATAAAATGGAGCATTTGTCGGAGAAGGTTGGTTGGGAATTCAGAAGTTCAGCAATTCGGAAAGTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>253 243 184 66 64 19 19 19 19 19 19 19 19 19 19</canonical_bands>
                <polymorphic_bands>427 253 66 64 19 19 19 19 19 19 19 19 19 19</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>253 243 184 66 64 19 19 19 19 19 19 19 19 19 19</canonical_bands>
                <polymorphic_bands>427 253 66 64 19 19 19 19 19 19 19 19 19 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACGAGACTGGAACATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTCTAATTTTCCGCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAACGAGACTGGAACATTTTTGGCGATTCTCTCGTGTGCTTTTCAATTGAGTATGATTATTTGTATGCCAGTTTCTGGCCTACTCTGTGATTCTGACCTCGGCTGGAGGTCCATTTATTACATTTTTGGAATTCTCACTCTTTTTTCCTATTTTCTATTCTTTTACTTCTATACAGATTCCCCCAGATTTCATAGAAATGTATCGGAAAAGGAATTGAAGAAAATTGAAAGCGGAAAATTAGAAATTT</canonical_amplicon>
		<polymorphic_amplicon>AAACGAGACTGGAACATTTTTGGCGATTCTCTCGTGTGCTTTTCAATTGAGTATGATTATTTGTATGCCAGTTTCTGGCCTACTCTGTGATTCTGACCTCGGCTGGAGKTCCATTTATTACATTTTTGGAATTCTCACTCTTTTTTCCTATTTTCTATTCTTTTACTTCTATACAGATTCCCCCAGATTTCATAGAAATGTATCGGAAAAGGAATTGAAGAAAATTGAAAGCGGAAAATTAGAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18765</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>25146</contig_pos>
        <strand></strand>
        <context>TTTCTGCAGC[C/T]TTACAGTAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATCTTAGCTTCAGTATTACTGTAGATACTGTAATCTTGCTTTCTGCAGC</left_flank>
        <right_flank>TTACAGTAATCCTATGACTCTTGAAAATCAATTTTTTCAAAATTATCAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCTAGACATGCTAGAAAATTGAAAATTGGATAGAAAAGCGGGAAATTTCAAGGAGATTAGAACAAAAAACAAAAAATGATGGTCGGCCGCGGTCCGGGCCGTGGTCCACACGGTCGAAAAGGTCTAAGAGAGTATGTGGGTCCTGGGGAACGTTAGGCGGTAACATTGCTAACCGTGTAGCTCCACCTACTGTCCTTCCTACAGTAATCTTAAAGATAGCGGGAACAGCACCGTGGTCGGCCACGGTCGGTCTACTGTAGCTTTTTCGGTTACTGTAGATACTGTAGCCCTGCTTCCGACAACCTTACAGTAATCGAGCTCATCCAAAAGATTAGTTTTTGGATTGTTGTAGTTATTTTGGGTTACTGTAATTTTTGGGTTACTGTAGCCTTATCGAATTACTGTAATTTTTTTTTAGATTACTGTGGTTTATTGGATTACTGTACATATCTTAGCTTCAGTATTACTGTAGATACTGTAATCTTGCTTTCTGCAGCCTTACAGTAATCCTATGACTCTTGAAAATCAATTTTTTCAAAATTATCAATGGAGCGCACTTTGCAGGAATACTCTCCATCGTGCTACAAATCGTGCCTCTCCCTGCAACGTGATCAGCTGCTCACATCGACTTCAGATGGAAAAGTCAAACTTTATGATGCCAAAAATTTCAACGTACTGCAGACGTATACGGTAGGTATCATTTAAAGGGACAGAGAGAAAATCTGGAAAAAAATGGAAAAAATCAGCTGAAAATGAGCTCAAAAATGTGAATTTTTGAATTTGGCGCCAAAATTTTTTTTCAAAAAAAATTTTGAATTTTGAATTTGGCGCCAAAATTTTTTTCTTGTTTCAAGTTTTAAAAAATTTCTTTCAGGTCGGCTCCTACACCCGCCAAGTACAACTGGACCATGGAGCGCACTTGGTGATGGCGCGAAGCGCGCGGACGAGATATAAATTTAGTGTAAGGGGATTACTGTAGATTTTGGATTACTGTGGTT</canonical>
            <polymorphic>TTCCTAGACATGCTAGAAAATTGAAAATTGGATAGAAAAGCGGGAAATTTCAAGGAGATTAGAACAAAAAACAAAAAATGATGGTCGGCCGCGGTCCGGGCCGTGGTCCACACGGTCGAAAAGGTCTAAGAGAGTATGTGGGTCCTGGGGAACGTTAGGCGGTAACATTGCTAACCGTGTAGCTCCACCTACTGTCCTTCCTACAGTAATCTTAAAGATAGCGGGAACAGCACCGTGGTCGGCCACGGTCGGTCTACTGTAGCTTTTTCGGTTACTGTAGATACTGTAGCCCTGCTTCCGACAACCTTACAGTAATCGAGCTCATCCAAAAGATTAGTTTTTGGATTGTTGTAGTTATTTTGGGTTACTGTAATTTTTGGGTTACTGTAGCCTTATCGAATTACTGTAATTTTTTTTTAGATTACTGTGGTTTATTGGATTACTGTACATATCTTAGCTTCAGTATTACTGTAGATACTGTAATCTTGCTTTCTGCAGCYTTACAGTAATCCTATGACTCTTGAAAATCAATTTTTTCAAAATTATCAATGGAGCGCACTTTGCAGGAATACTCTCCATCGTGCTACAAATCGTGCCTCTCCCTGCAACGTGATCAGCTGCTCACATCGACTTCAGATGGAAAAGTCAAACTTTATGATGCCAAAAATTTCAACGTACTGCAGACGTATACGGTAGGTATCATTTAAAGGGACAGAGAGAAAATCTGGAAAAAAATGGAAAAAATCAGCTGAAAATGAGCTCAAAAATGTGAATTTTTGAATTTGGCGCCAAAATTTTTTTTCAAAAAAAATTTTGAATTTTGAATTTGGCGCCAAAATTTTTTTCTTGTTTCAAGTTTTAAAAAATTTCTTTCAGGTCGGCTCCTACACCCGCCAAGTACAACTGGACCATGGAGCGCACTTGGTGATGGCGCGAAGCGCGCGGACGAGATATAAATTTAGTGTAAGGGGATTACTGTAGATTTTGGATTACTGTGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>131 122 119 119 88 82 70 67 60 41 31 27 20 12 11</canonical_bands>
                <polymorphic_bands>160 131 122 119 88 82 70 67 60 31 27 20 12 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTGTGGTTTATTGGATTACTGT</pcr_primer_p1>
		<pcr_primer_p2>GTTGAAATTTTTGGCATCATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACTGTGGTTTATTGGATTACTGTACATATCTTAGCTTCAGTATTACTGTAGATACTGTAATCTTGCTTTCTGCAGCCTTACAGTAATCCTATGACTCTTGAAAATCAATTTTTTCAAAATTATCAATGGAGCGCACTTTGCAGGAATACTCTCCATCGTGCTACAAATCGTGCCTCTCCCTGCAACGTGATCAGCTGCTCACATCGACTTCAGATGGAAAAGTCAAACTTTATGATGCCAAAAATTTCAAC</canonical_amplicon>
		<polymorphic_amplicon>ACTGTGGTTTATTGGATTACTGTACATATCTTAGCTTCAGTATTACTGTAGATACTGTAATCTTGCTTTCTGCAGCYTTACAGTAATCCTATGACTCTTGAAAATCAATTTTTTCAAAATTATCAATGGAGCGCACTTTGCAGGAATACTCTCCATCGTGCTACAAATCGTGCCTCTCCCTGCAACGTGATCAGCTGCTCACATCGACTTCAGATGGAAAAGTCAAACTTTATGATGCCAAAAATTTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18766</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>25365</contig_pos>
        <strand></strand>
        <context>GGGACAGAGA[G/A]AAAATCTGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTCAACGTACTGCAGACGTATACGGTAGGTATCATTTAAAGGGACAGAGA</left_flank>
        <right_flank>AAAATCTGGAAAAAAATGGAAAAAATCAGCTGAAAATGAGCTCAAAAATG</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCGGGAACAGCACCGTGGTCGGCCACGGTCGGTCTACTGTAGCTTTTTCGGTTACTGTAGATACTGTAGCCCTGCTTCCGACAACCTTACAGTAATCGAGCTCATCCAAAAGATTAGTTTTTGGATTGTTGTAGTTATTTTGGGTTACTGTAATTTTTGGGTTACTGTAGCCTTATCGAATTACTGTAATTTTTTTTTAGATTACTGTGGTTTATTGGATTACTGTACATATCTTAGCTTCAGTATTACTGTAGATACTGTAATCTTGCTTTCTGCAGCCTTACAGTAATCCTATGACTCTTGAAAATCAATTTTTTCAAAATTATCAATGGAGCGCACTTTGCAGGAATACTCTCCATCGTGCTACAAATCGTGCCTCTCCCTGCAACGTGATCAGCTGCTCACATCGACTTCAGATGGAAAAGTCAAACTTTATGATGCCAAAAATTTCAACGTACTGCAGACGTATACGGTAGGTATCATTTAAAGGGACAGAGAGAAAATCTGGAAAAAAATGGAAAAAATCAGCTGAAAATGAGCTCAAAAATGTGAATTTTTGAATTTGGCGCCAAAATTTTTTTTCAAAAAAAATTTTGAATTTTGAATTTGGCGCCAAAATTTTTTTCTTGTTTCAAGTTTTAAAAAATTTCTTTCAGGTCGGCTCCTACACCCGCCAAGTACAACTGGACCATGGAGCGCACTTGGTGATGGCGCGAAGCGCGCGGACGAGATATAAATTTAGTGTAAGGGGATTACTGTAGATTTTGGATTACTGTGGTTTTCAGGATTACTGTAGCTACTTCTATTACTGTAACTTTTTTTTTGGGTTACTGTAGCTTCGAAAACCCAAAATTTCAAAATTTCGAAAAAATATATATTACTGTAACTGTTTTTGGGTTACTGTAGATGCTCTATTTTCCAGGGTTTTTGGATTACTGTAGCTCCAAAACGCCCGAAATTTTGGGTCACTGTAGATTCTGGATTACTGTAGTTTTCAGG</canonical>
            <polymorphic>AGCGGGAACAGCACCGTGGTCGGCCACGGTCGGTCTACTGTAGCTTTTTCGGTTACTGTAGATACTGTAGCCCTGCTTCCGACAACCTTACAGTAATCGAGCTCATCCAAAAGATTAGTTTTTGGATTGTTGTAGTTATTTTGGGTTACTGTAATTTTTGGGTTACTGTAGCCTTATCGAATTACTGTAATTTTTTTTTAGATTACTGTGGTTTATTGGATTACTGTACATATCTTAGCTTCAGTATTACTGTAGATACTGTAATCTTGCTTTCTGCAGCCTTACAGTAATCCTATGACTCTTGAAAATCAATTTTTTCAAAATTATCAATGGAGCGCACTTTGCAGGAATACTCTCCATCGTGCTACAAATCGTGCCTCTCCCTGCAACGTGATCAGCTGCTCACATCGACTTCAGATGGAAAAGTCAAACTTTATGATGCCAAAAATTTCAACGTACTGCAGACGTATACGGTAGGTATCATTTAAAGGGACAGAGARAAAATCTGGAAAAAAATGGAAAAAATCAGCTGAAAATGAGCTCAAAAATGTGAATTTTTGAATTTGGCGCCAAAATTTTTTTTCAAAAAAAATTTTGAATTTTGAATTTGGCGCCAAAATTTTTTTCTTGTTTCAAGTTTTAAAAAATTTCTTTCAGGTCGGCTCCTACACCCGCCAAGTACAACTGGACCATGGAGCGCACTTGGTGATGGCGCGAAGCGCGCGGACGAGATATAAATTTAGTGTAAGGGGATTACTGTAGATTTTGGATTACTGTGGTTTTCAGGATTACTGTAGCTACTTCTATTACTGTAACTTTTTTTTTGGGTTACTGTAGCTTCGAAAACCCAAAATTTCAAAATTTCGAAAAAATATATATTACTGTAACTGTTTTTGGGTTACTGTAGATGCTCTATTTTCCAGGGTTTTTGGATTACTGTAGCTCCAAAACGCCCGAAATTTTGGGTCACTGTAGATTCTGGATTACTGTAGTTTTCAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTATGACTCTTGAAAATCAAT</pcr_primer_p1>
		<pcr_primer_p2>TCACATTTTTGAGCTCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>TCCTATGACTCTTGAAAATCAATTTTTTCAAAATTATCAATGGAGCGCACTTTGCAGGAATACTCTCCATCGTGCTACAAATCGTGCCTCTCCCTGCAACGTGATCAGCTGCTCACATCGACTTCAGATGGAAAAGTCAAACTTTATGATGCCAAAAATTTCAACGTACTGCAGACGTATACGGTAGGTATCATTTAAAGGGACAGAGAGAAAATCTGGAAAAAAATGGAAAAAATCAGCTGAAAATGAGCTCAAAAATGTGA</canonical_amplicon>
		<polymorphic_amplicon>TCCTATGACTCTTGAAAATCAATTTTTTCAAAATTATCAATGGAGCGCACTTTGCAGGAATACTCTCCATCGTGCTACAAATCGTGCCTCTCCCTGCAACGTGATCAGCTGCTCACATCGACTTCAGATGGAAAAGTCAAACTTTATGATGCCAAAAATTTCAACGTACTGCAGACGTATACGGTAGGTATCATTTAAAGGGACAGAGARAAAATCTGGAAAAAAATGGAAAAAATCAGCTGAAAATGAGCTCAAAAATGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18809</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>84810</contig_pos>
        <strand>+</strand>
        <context>TGCGGAGTTT[C/T]TMGAAAATYA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTGTGAATGCACCGAGTGCACCAAACCTTACGACAAGTTGCGGAGTTT</left_flank>
        <right_flank>TCGAAAATTAAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTAACCGCGTACATTGAGTTGTCCACACCACAAAGCACACTTTGCGCCGTCAATTTGCGCATCGAGCTGATTTTTCCGTTGAGTTTTGCCTAAAAATTGGAAATTTTCGAAATTAAAAAAAAAAACGATTTTTGAGTCATTTTTTTAAATTTTTAGGCTATTTTAGGTCATTTCAAGTCGATTTCCCTCATTTTTTTCACCTTTCCAATAATCGCTCGATGCTTGAGATCCCAAAAAGTGACGGAATCCGATGAAGCCGTGGCGGCTATTTGATCGTCGAACGAGACGACACCGCTGCTTCCCACAGTGTAGAGAGTGTCCTCGCTCTGCAAGAAAATCGATTTTTTAGGTTATTTTCGGAATTTTTTTCAGCCAAAAATTGACAGAAAACGAAGAAATTGAGCTCAAAATTTGAATTTACGAACTTCCCACCAAAAATCTTCCAAGTTTCTGTGAATGCACCGAGTGCACCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAATTAAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCTAATTTTTGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAATATATTGATTTCAGCCATATAAAATAGAAAATTCAGCTGAAAAATATGGAAAAAAACCGAAAATTAGGGATTTTTGAGAAATTTTGGCCTAATTTCCGAAAATATCGATTTCGATCTAATTTTCGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAAAAATCGATTTTTGGGGTTCTTACCGTTCCATCACCAAGCGCGTCGGTCACCCGACACGCCAGCTGTCCATTCTCGACATTCCACATGAACAA</canonical>
            <polymorphic>TGTAACCGCGTACATTGAGTTGTCCACACCACAAAGCACACTTTGCGCCGTCAATTTGCGCATCGAGCTGATTTTTCCGTTGAGTTTTGCCTAAAAATTGGAAATTTTCGAAATTAAAAAAAAAAACGATTTTTGAGTCATTTTTTTAAATTTTTAGGCTATTTTAGGTCATTTCAAGTCGATTTCCCTCATTTTTTTCACCTTTCCAATAATCGCTCGATGCTTGAGATCCCAAAAAGTGACGGAATCCGATGAAGCCGTGGCGGCTATTTGATCGTCGAACGAGACGACACCGCTGCTTCCCACAGTGTAGAGAGTGTCCTCGCTCTGCAAGAAAATCGATTTTTTAGGTTATTTTCGGAATTTTTTTCAGCCAAAAATTGACAGAAAACGAAGAAATTGAGCTCAAAATTTGAATTTACGAACTTCCCACCAAAAATCTTCCAAGTTTCTGTGAATGCACCGAGTGCACCAAACCTTACGACAAGTTGCGGAGTTTYTCGAAAATTAAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCTAATTTTTGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAATATATTGATTTCAGCCATATAAAATAGAAAATTCAGCTGAAAAATATGGAAAAAAACCGAAAATTAGGGATTTTTGAGAAATTTTGGCCTAATTTCCGAAAATATCGATTTCGATCTAATTTTCGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAAAAATCGATTTTTGGGGTTCTTACCGTTCCATCACCAAGCGCGTCGGTCACCCGACACGCCAGCTGTCCATTCTCGACATTCCACATGAACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>500 213 161 106 20</canonical_bands>
                <polymorphic_bands>713 161 106 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTCCAAGTTTCTGTGAATG</pcr_primer_p1>
		<pcr_primer_p2>AGGCCTAAAACGATATTTTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>TCTTCCAAGTTTCTGTGAATGCACCGAGTGCACCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAATTAAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCT</canonical_amplicon>
		<polymorphic_amplicon>TCTTCCAAGTTTCTGTGAATGCACCGAGTGCACCAAACCTTACGACAAGTTGCGGAGTTTYTCGAAAATTAAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18810</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>84812</contig_pos>
        <strand>+</strand>
        <context>CGGAGTTTYT[A/C]GAAAATYAAR</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGTGAATGCACCGAGTGCACCAAACCTTACGACAAGTTGCGGAGTTTCT</left_flank>
        <right_flank>GAAAATTAAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACCGCGTACATTGAGTTGTCCACACCACAAAGCACACTTTGCGCCGTCAATTTGCGCATCGAGCTGATTTTTCCGTTGAGTTTTGCCTAAAAATTGGAAATTTTCGAAATTAAAAAAAAAAACGATTTTTGAGTCATTTTTTTAAATTTTTAGGCTATTTTAGGTCATTTCAAGTCGATTTCCCTCATTTTTTTCACCTTTCCAATAATCGCTCGATGCTTGAGATCCCAAAAAGTGACGGAATCCGATGAAGCCGTGGCGGCTATTTGATCGTCGAACGAGACGACACCGCTGCTTCCCACAGTGTAGAGAGTGTCCTCGCTCTGCAAGAAAATCGATTTTTTAGGTTATTTTCGGAATTTTTTTCAGCCAAAAATTGACAGAAAACGAAGAAATTGAGCTCAAAATTTGAATTTACGAACTTCCCACCAAAAATCTTCCAAGTTTCTGTGAATGCACCGAGTGCACCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAATTAAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCTAATTTTTGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAATATATTGATTTCAGCCATATAAAATAGAAAATTCAGCTGAAAAATATGGAAAAAAACCGAAAATTAGGGATTTTTGAGAAATTTTGGCCTAATTTCCGAAAATATCGATTTCGATCTAATTTTCGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAAAAATCGATTTTTGGGGTTCTTACCGTTCCATCACCAAGCGCGTCGGTCACCCGACACGCCAGCTGTCCATTCTCGACATTCCACATGAACAACT</canonical>
            <polymorphic>TAACCGCGTACATTGAGTTGTCCACACCACAAAGCACACTTTGCGCCGTCAATTTGCGCATCGAGCTGATTTTTCCGTTGAGTTTTGCCTAAAAATTGGAAATTTTCGAAATTAAAAAAAAAAACGATTTTTGAGTCATTTTTTTAAATTTTTAGGCTATTTTAGGTCATTTCAAGTCGATTTCCCTCATTTTTTTCACCTTTCCAATAATCGCTCGATGCTTGAGATCCCAAAAAGTGACGGAATCCGATGAAGCCGTGGCGGCTATTTGATCGTCGAACGAGACGACACCGCTGCTTCCCACAGTGTAGAGAGTGTCCTCGCTCTGCAAGAAAATCGATTTTTTAGGTTATTTTCGGAATTTTTTTCAGCCAAAAATTGACAGAAAACGAAGAAATTGAGCTCAAAATTTGAATTTACGAACTTCCCACCAAAAATCTTCCAAGTTTCTGTGAATGCACCGAGTGCACCAAACCTTACGACAAGTTGCGGAGTTTCTMGAAAATTAAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCTAATTTTTGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAATATATTGATTTCAGCCATATAAAATAGAAAATTCAGCTGAAAAATATGGAAAAAAACCGAAAATTAGGGATTTTTGAGAAATTTTGGCCTAATTTCCGAAAATATCGATTTCGATCTAATTTTCGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAAAAATCGATTTTTGGGGTTCTTACCGTTCCATCACCAAGCGCGTCGGTCACCCGACACGCCAGCTGTCCATTCTCGACATTCCACATGAACAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>162 141 111 71 69 62 61 61 45 38 30 29 24 20 20 20 20 10 6</canonical_bands>
                <polymorphic_bands>191 141 111 71 69 62 61 61 45 38 30 24 20 20 20 20 10 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTCCAAGTTTCTGTGAATG</pcr_primer_p1>
		<pcr_primer_p2>AGGCCTAAAACGATATTTTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>TCTTCCAAGTTTCTGTGAATGCACCGAGTGCACCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAATTAAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCT</canonical_amplicon>
		<polymorphic_amplicon>TCTTCCAAGTTTCTGTGAATGCACCGAGTGCACCAAACCTTACGACAAGTTGCGGAGTTTCTMGAAAATTAAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18811</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>84819</contig_pos>
        <strand>+</strand>
        <context>TYTMGAAAAT[C/T]AARAATTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCACCGAGTGCACCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAAT</left_flank>
        <right_flank>AAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTACATTGAGTTGTCCACACCACAAAGCACACTTTGCGCCGTCAATTTGCGCATCGAGCTGATTTTTCCGTTGAGTTTTGCCTAAAAATTGGAAATTTTCGAAATTAAAAAAAAAAACGATTTTTGAGTCATTTTTTTAAATTTTTAGGCTATTTTAGGTCATTTCAAGTCGATTTCCCTCATTTTTTTCACCTTTCCAATAATCGCTCGATGCTTGAGATCCCAAAAAGTGACGGAATCCGATGAAGCCGTGGCGGCTATTTGATCGTCGAACGAGACGACACCGCTGCTTCCCACAGTGTAGAGAGTGTCCTCGCTCTGCAAGAAAATCGATTTTTTAGGTTATTTTCGGAATTTTTTTCAGCCAAAAATTGACAGAAAACGAAGAAATTGAGCTCAAAATTTGAATTTACGAACTTCCCACCAAAAATCTTCCAAGTTTCTGTGAATGCACCGAGTGCACCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAATTAAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCTAATTTTTGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAATATATTGATTTCAGCCATATAAAATAGAAAATTCAGCTGAAAAATATGGAAAAAAACCGAAAATTAGGGATTTTTGAGAAATTTTGGCCTAATTTCCGAAAATATCGATTTCGATCTAATTTTCGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAAAAATCGATTTTTGGGGTTCTTACCGTTCCATCACCAAGCGCGTCGGTCACCCGACACGCCAGCTGTCCATTCTCGACATTCCACATGAACAACTGCGACGA</canonical>
            <polymorphic>GTACATTGAGTTGTCCACACCACAAAGCACACTTTGCGCCGTCAATTTGCGCATCGAGCTGATTTTTCCGTTGAGTTTTGCCTAAAAATTGGAAATTTTCGAAATTAAAAAAAAAAACGATTTTTGAGTCATTTTTTTAAATTTTTAGGCTATTTTAGGTCATTTCAAGTCGATTTCCCTCATTTTTTTCACCTTTCCAATAATCGCTCGATGCTTGAGATCCCAAAAAGTGACGGAATCCGATGAAGCCGTGGCGGCTATTTGATCGTCGAACGAGACGACACCGCTGCTTCCCACAGTGTAGAGAGTGTCCTCGCTCTGCAAGAAAATCGATTTTTTAGGTTATTTTCGGAATTTTTTTCAGCCAAAAATTGACAGAAAACGAAGAAATTGAGCTCAAAATTTGAATTTACGAACTTCCCACCAAAAATCTTCCAAGTTTCTGTGAATGCACCGAGTGCACCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAATYAAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCTAATTTTTGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAATATATTGATTTCAGCCATATAAAATAGAAAATTCAGCTGAAAAATATGGAAAAAAACCGAAAATTAGGGATTTTTGAGAAATTTTGGCCTAATTTCCGAAAATATCGATTTCGATCTAATTTTCGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAAAAATCGATTTTTGGGGTTCTTACCGTTCCATCACCAAGCGCGTCGGTCACCCGACACGCCAGCTGTCCATTCTCGACATTCCACATGAACAACTGCGACGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>501 362 105 32</canonical_bands>
                <polymorphic_bands>863 105 32</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>213 145 125 90 73 43 43 37 32 27 26 19 18 17 17 12 12 11 11 9 7 7 6</canonical_bands>
                <polymorphic_bands>213 145 125 97 73 43 43 37 32 27 26 19 18 17 17 12 12 11 11 9 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTCCAAGTTTCTGTGAATG</pcr_primer_p1>
		<pcr_primer_p2>AGGCCTAAAACGATATTTTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>TCTTCCAAGTTTCTGTGAATGCACCGAGTGCACCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAATTAAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCT</canonical_amplicon>
		<polymorphic_amplicon>TCTTCCAAGTTTCTGTGAATGCACCGAGTGCACCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAATYAAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18812</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>84822</contig_pos>
        <strand>+</strand>
        <context>MGAAAATYAA[A/G]AATTCAACGR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCGAGTGCACCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAATTAA</left_flank>
        <right_flank>AATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTGAGTTGTCCACACCACAAAGCACACTTTGCGCCGTCAATTTGCGCATCGAGCTGATTTTTCCGTTGAGTTTTGCCTAAAAATTGGAAATTTTCGAAATTAAAAAAAAAAACGATTTTTGAGTCATTTTTTTAAATTTTTAGGCTATTTTAGGTCATTTCAAGTCGATTTCCCTCATTTTTTTCACCTTTCCAATAATCGCTCGATGCTTGAGATCCCAAAAAGTGACGGAATCCGATGAAGCCGTGGCGGCTATTTGATCGTCGAACGAGACGACACCGCTGCTTCCCACAGTGTAGAGAGTGTCCTCGCTCTGCAAGAAAATCGATTTTTTAGGTTATTTTCGGAATTTTTTTCAGCCAAAAATTGACAGAAAACGAAGAAATTGAGCTCAAAATTTGAATTTACGAACTTCCCACCAAAAATCTTCCAAGTTTCTGTGAATGCACCGAGTGCACCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAATTAAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCTAATTTTTGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAATATATTGATTTCAGCCATATAAAATAGAAAATTCAGCTGAAAAATATGGAAAAAAACCGAAAATTAGGGATTTTTGAGAAATTTTGGCCTAATTTCCGAAAATATCGATTTCGATCTAATTTTCGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAAAAATCGATTTTTGGGGTTCTTACCGTTCCATCACCAAGCGCGTCGGTCACCCGACACGCCAGCTGTCCATTCTCGACATTCCACATGAACAACTGCGACGATCC</canonical>
            <polymorphic>CATTGAGTTGTCCACACCACAAAGCACACTTTGCGCCGTCAATTTGCGCATCGAGCTGATTTTTCCGTTGAGTTTTGCCTAAAAATTGGAAATTTTCGAAATTAAAAAAAAAAACGATTTTTGAGTCATTTTTTTAAATTTTTAGGCTATTTTAGGTCATTTCAAGTCGATTTCCCTCATTTTTTTCACCTTTCCAATAATCGCTCGATGCTTGAGATCCCAAAAAGTGACGGAATCCGATGAAGCCGTGGCGGCTATTTGATCGTCGAACGAGACGACACCGCTGCTTCCCACAGTGTAGAGAGTGTCCTCGCTCTGCAAGAAAATCGATTTTTTAGGTTATTTTCGGAATTTTTTTCAGCCAAAAATTGACAGAAAACGAAGAAATTGAGCTCAAAATTTGAATTTACGAACTTCCCACCAAAAATCTTCCAAGTTTCTGTGAATGCACCGAGTGCACCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAATTAARAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCTAATTTTTGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAATATATTGATTTCAGCCATATAAAATAGAAAATTCAGCTGAAAAATATGGAAAAAAACCGAAAATTAGGGATTTTTGAGAAATTTTGGCCTAATTTCCGAAAATATCGATTTCGATCTAATTTTCGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAAAAATCGATTTTTGGGGTTCTTACCGTTCCATCACCAAGCGCGTCGGTCACCCGACACGCCAGCTGTCCATTCTCGACATTCCACATGAACAACTGCGACGATCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>213 186 153 99 97 90 50 48 46 12 6</canonical_bands>
                <polymorphic_bands>250 213 186 99 90 50 48 46 12 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTCCAAGTTTCTGTGAATG</pcr_primer_p1>
		<pcr_primer_p2>AGGCCTAAAACGATATTTTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>TCTTCCAAGTTTCTGTGAATGCACCGAGTGCACCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAATTAAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCT</canonical_amplicon>
		<polymorphic_amplicon>TCTTCCAAGTTTCTGTGAATGCACCGAGTGCACCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAATTAARAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18813</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>84832</contig_pos>
        <strand>+</strand>
        <context>RAATTCAACG[A/G]AAAAACGTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAATTAAAAATTCAACG</left_flank>
        <right_flank>AAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCACACCACAAAGCACACTTTGCGCCGTCAATTTGCGCATCGAGCTGATTTTTCCGTTGAGTTTTGCCTAAAAATTGGAAATTTTCGAAATTAAAAAAAAAAACGATTTTTGAGTCATTTTTTTAAATTTTTAGGCTATTTTAGGTCATTTCAAGTCGATTTCCCTCATTTTTTTCACCTTTCCAATAATCGCTCGATGCTTGAGATCCCAAAAAGTGACGGAATCCGATGAAGCCGTGGCGGCTATTTGATCGTCGAACGAGACGACACCGCTGCTTCCCACAGTGTAGAGAGTGTCCTCGCTCTGCAAGAAAATCGATTTTTTAGGTTATTTTCGGAATTTTTTTCAGCCAAAAATTGACAGAAAACGAAGAAATTGAGCTCAAAATTTGAATTTACGAACTTCCCACCAAAAATCTTCCAAGTTTCTGTGAATGCACCGAGTGCACCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAATTAAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCTAATTTTTGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAATATATTGATTTCAGCCATATAAAATAGAAAATTCAGCTGAAAAATATGGAAAAAAACCGAAAATTAGGGATTTTTGAGAAATTTTGGCCTAATTTCCGAAAATATCGATTTCGATCTAATTTTCGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAAAAATCGATTTTTGGGGTTCTTACCGTTCCATCACCAAGCGCGTCGGTCACCCGACACGCCAGCTGTCCATTCTCGACATTCCACATGAACAACTGCGACGATCCATAGAATCCG</canonical>
            <polymorphic>TCCACACCACAAAGCACACTTTGCGCCGTCAATTTGCGCATCGAGCTGATTTTTCCGTTGAGTTTTGCCTAAAAATTGGAAATTTTCGAAATTAAAAAAAAAAACGATTTTTGAGTCATTTTTTTAAATTTTTAGGCTATTTTAGGTCATTTCAAGTCGATTTCCCTCATTTTTTTCACCTTTCCAATAATCGCTCGATGCTTGAGATCCCAAAAAGTGACGGAATCCGATGAAGCCGTGGCGGCTATTTGATCGTCGAACGAGACGACACCGCTGCTTCCCACAGTGTAGAGAGTGTCCTCGCTCTGCAAGAAAATCGATTTTTTAGGTTATTTTCGGAATTTTTTTCAGCCAAAAATTGACAGAAAACGAAGAAATTGAGCTCAAAATTTGAATTTACGAACTTCCCACCAAAAATCTTCCAAGTTTCTGTGAATGCACCGAGTGCACCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAATTAAAAATTCAACGRAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCTAATTTTTGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAATATATTGATTTCAGCCATATAAAATAGAAAATTCAGCTGAAAAATATGGAAAAAAACCGAAAATTAGGGATTTTTGAGAAATTTTGGCCTAATTTCCGAAAATATCGATTTCGATCTAATTTTCGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAAAAATCGATTTTTGGGGTTCTTACCGTTCCATCACCAAGCGCGTCGGTCACCCGACACGCCAGCTGTCCATTCTCGACATTCCACATGAACAACTGCGACGATCCATAGAATCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCAAACCTTACGACAAGT</pcr_primer_p1>
		<pcr_primer_p2>AGGCCTAAAACGATATTTTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>CACCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAATTAAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCT</canonical_amplicon>
		<polymorphic_amplicon>CACCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAATTAAAAATTCAACGRAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18814</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>84886</contig_pos>
        <strand>+</strand>
        <context>TTCAGCATGG[A/T]AAATCGATAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGG</left_flank>
        <right_flank>AAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGTTGAGTTTTGCCTAAAAATTGGAAATTTTCGAAATTAAAAAAAAAAACGATTTTTGAGTCATTTTTTTAAATTTTTAGGCTATTTTAGGTCATTTCAAGTCGATTTCCCTCATTTTTTTCACCTTTCCAATAATCGCTCGATGCTTGAGATCCCAAAAAGTGACGGAATCCGATGAAGCCGTGGCGGCTATTTGATCGTCGAACGAGACGACACCGCTGCTTCCCACAGTGTAGAGAGTGTCCTCGCTCTGCAAGAAAATCGATTTTTTAGGTTATTTTCGGAATTTTTTTCAGCCAAAAATTGACAGAAAACGAAGAAATTGAGCTCAAAATTTGAATTTACGAACTTCCCACCAAAAATCTTCCAAGTTTCTGTGAATGCACCGAGTGCACCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAATTAAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCTAATTTTTGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAATATATTGATTTCAGCCATATAAAATAGAAAATTCAGCTGAAAAATATGGAAAAAAACCGAAAATTAGGGATTTTTGAGAAATTTTGGCCTAATTTCCGAAAATATCGATTTCGATCTAATTTTCGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAAAAATCGATTTTTGGGGTTCTTACCGTTCCATCACCAAGCGCGTCGGTCACCCGACACGCCAGCTGTCCATTCTCGACATTCCACATGAACAACTGCGACGATCCATAGAATCCGAGCAGGAATTCAGATGACGTGGCGAGTTGGAATGCCCAAGTCGTGTTGTTGTCC</canonical>
            <polymorphic>CCGTTGAGTTTTGCCTAAAAATTGGAAATTTTCGAAATTAAAAAAAAAAACGATTTTTGAGTCATTTTTTTAAATTTTTAGGCTATTTTAGGTCATTTCAAGTCGATTTCCCTCATTTTTTTCACCTTTCCAATAATCGCTCGATGCTTGAGATCCCAAAAAGTGACGGAATCCGATGAAGCCGTGGCGGCTATTTGATCGTCGAACGAGACGACACCGCTGCTTCCCACAGTGTAGAGAGTGTCCTCGCTCTGCAAGAAAATCGATTTTTTAGGTTATTTTCGGAATTTTTTTCAGCCAAAAATTGACAGAAAACGAAGAAATTGAGCTCAAAATTTGAATTTACGAACTTCCCACCAAAAATCTTCCAAGTTTCTGTGAATGCACCGAGTGCACCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAATTAAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGWAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCTAATTTTTGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAATATATTGATTTCAGCCATATAAAATAGAAAATTCAGCTGAAAAATATGGAAAAAAACCGAAAATTAGGGATTTTTGAGAAATTTTGGCCTAATTTCCGAAAATATCGATTTCGATCTAATTTTCGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAAAAATCGATTTTTGGGGTTCTTACCGTTCCATCACCAAGCGCGTCGGTCACCCGACACGCCAGCTGTCCATTCTCGACATTCCACATGAACAACTGCGACGATCCATAGAATCCGAGCAGGAATTCAGATGACGTGGCGAGTTGGAATGCCCAAGTCGTGTTGTTGTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCAAACCTTACGACAAGT</pcr_primer_p1>
		<pcr_primer_p2>AGGCCTAAAACGATATTTTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>CACCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAATTAAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCT</canonical_amplicon>
		<polymorphic_amplicon>CACCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAATTAAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGWAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18815</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>84923</contig_pos>
        <strand></strand>
        <context>GCTAGAAATA[T/G]GAAATCAGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATA</left_flank>
        <right_flank>GAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAAAAAAAAACGATTTTTGAGTCATTTTTTTAAATTTTTAGGCTATTTTAGGTCATTTCAAGTCGATTTCCCTCATTTTTTTCACCTTTCCAATAATCGCTCGATGCTTGAGATCCCAAAAAGTGACGGAATCCGATGAAGCCGTGGCGGCTATTTGATCGTCGAACGAGACGACACCGCTGCTTCCCACAGTGTAGAGAGTGTCCTCGCTCTGCAAGAAAATCGATTTTTTAGGTTATTTTCGGAATTTTTTTCAGCCAAAAATTGACAGAAAACGAAGAAATTGAGCTCAAAATTTGAATTTACGAACTTCCCACCAAAAATCTTCCAAGTTTCTGTGAATGCACCGAGTGCACCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAATTAAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCTAATTTTTGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAATATATTGATTTCAGCCATATAAAATAGAAAATTCAGCTGAAAAATATGGAAAAAAACCGAAAATTAGGGATTTTTGAGAAATTTTGGCCTAATTTCCGAAAATATCGATTTCGATCTAATTTTCGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAAAAATCGATTTTTGGGGTTCTTACCGTTCCATCACCAAGCGCGTCGGTCACCCGACACGCCAGCTGTCCATTCTCGACATTCCACATGAACAACTGCGACGATCCATAGAATCCGAGCAGGAATTCAGATGACGTGGCGAGTTGGAATGCCCAAGTCGTGTTGTTGTCCAGAGTTCGAATCAATTCCCCGGTTGTGAGGTTCCACC</canonical>
            <polymorphic>TTAAAAAAAAAAACGATTTTTGAGTCATTTTTTTAAATTTTTAGGCTATTTTAGGTCATTTCAAGTCGATTTCCCTCATTTTTTTCACCTTTCCAATAATCGCTCGATGCTTGAGATCCCAAAAAGTGACGGAATCCGATGAAGCCGTGGCGGCTATTTGATCGTCGAACGAGACGACACCGCTGCTTCCCACAGTGTAGAGAGTGTCCTCGCTCTGCAAGAAAATCGATTTTTTAGGTTATTTTCGGAATTTTTTTCAGCCAAAAATTGACAGAAAACGAAGAAATTGAGCTCAAAATTTGAATTTACGAACTTCCCACCAAAAATCTTCCAAGTTTCTGTGAATGCACCGAGTGCACCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAATTAAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATAKGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCTAATTTTTGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAATATATTGATTTCAGCCATATAAAATAGAAAATTCAGCTGAAAAATATGGAAAAAAACCGAAAATTAGGGATTTTTGAGAAATTTTGGCCTAATTTCCGAAAATATCGATTTCGATCTAATTTTCGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAAAAATCGATTTTTGGGGTTCTTACCGTTCCATCACCAAGCGCGTCGGTCACCCGACACGCCAGCTGTCCATTCTCGACATTCCACATGAACAACTGCGACGATCCATAGAATCCGAGCAGGAATTCAGATGACGTGGCGAGTTGGAATGCCCAAGTCGTGTTGTTGTCCAGAGTTCGAATCAATTCCCCGGTTGTGAGGTTCCACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTGGGGTATTTTCAAAC</pcr_primer_p1>
		<pcr_primer_p2>GAATTTTCTATTTTATATGGCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCTAATTTTTGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAATATATTGATTTCAGCCATATAAAATAGAAAATTC</canonical_amplicon>
		<polymorphic_amplicon>GATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATAKGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCTAATTTTTGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAATATATTGATTTCAGCCATATAAAATAGAAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18816</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>84967</contig_pos>
        <strand>+</strand>
        <context>AAAATTAGGG[A/G]TTTTCGGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGG</left_flank>
        <right_flank>TTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCTAATT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTATTTTAGGTCATTTCAAGTCGATTTCCCTCATTTTTTTCACCTTTCCAATAATCGCTCGATGCTTGAGATCCCAAAAAGTGACGGAATCCGATGAAGCCGTGGCGGCTATTTGATCGTCGAACGAGACGACACCGCTGCTTCCCACAGTGTAGAGAGTGTCCTCGCTCTGCAAGAAAATCGATTTTTTAGGTTATTTTCGGAATTTTTTTCAGCCAAAAATTGACAGAAAACGAAGAAATTGAGCTCAAAATTTGAATTTACGAACTTCCCACCAAAAATCTTCCAAGTTTCTGTGAATGCACCGAGTGCACCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAATTAAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCTAATTTTTGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAATATATTGATTTCAGCCATATAAAATAGAAAATTCAGCTGAAAAATATGGAAAAAAACCGAAAATTAGGGATTTTTGAGAAATTTTGGCCTAATTTCCGAAAATATCGATTTCGATCTAATTTTCGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAAAAATCGATTTTTGGGGTTCTTACCGTTCCATCACCAAGCGCGTCGGTCACCCGACACGCCAGCTGTCCATTCTCGACATTCCACATGAACAACTGCGACGATCCATAGAATCCGAGCAGGAATTCAGATGACGTGGCGAGTTGGAATGCCCAAGTCGTGTTGTTGTCCAGAGTTCGAATCAATTCCCCGGTTGTGAGGTTCCACCAACAGATTACGCCTGAAAAATGAGATTATTAGATTTTTAAGAAT</canonical>
            <polymorphic>GCTATTTTAGGTCATTTCAAGTCGATTTCCCTCATTTTTTTCACCTTTCCAATAATCGCTCGATGCTTGAGATCCCAAAAAGTGACGGAATCCGATGAAGCCGTGGCGGCTATTTGATCGTCGAACGAGACGACACCGCTGCTTCCCACAGTGTAGAGAGTGTCCTCGCTCTGCAAGAAAATCGATTTTTTAGGTTATTTTCGGAATTTTTTTCAGCCAAAAATTGACAGAAAACGAAGAAATTGAGCTCAAAATTTGAATTTACGAACTTCCCACCAAAAATCTTCCAAGTTTCTGTGAATGCACCGAGTGCACCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAATTAAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGRTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCTAATTTTTGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAATATATTGATTTCAGCCATATAAAATAGAAAATTCAGCTGAAAAATATGGAAAAAAACCGAAAATTAGGGATTTTTGAGAAATTTTGGCCTAATTTCCGAAAATATCGATTTCGATCTAATTTTCGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAAAAATCGATTTTTGGGGTTCTTACCGTTCCATCACCAAGCGCGTCGGTCACCCGACACGCCAGCTGTCCATTCTCGACATTCCACATGAACAACTGCGACGATCCATAGAATCCGAGCAGGAATTCAGATGACGTGGCGAGTTGGAATGCCCAAGTCGTGTTGTTGTCCAGAGTTCGAATCAATTCCCCGGTTGTGAGGTTCCACCAACAGATTACGCCTGAAAAATGAGATTATTAGATTTTTAAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTGGGGTATTTTCAAAC</pcr_primer_p1>
		<pcr_primer_p2>GAATTTTCTATTTTATATGGCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCTAATTTTTGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAATATATTGATTTCAGCCATATAAAATAGAAAATTC</canonical_amplicon>
		<polymorphic_amplicon>GATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGRTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCTAATTTTTGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAATATATTGATTTCAGCCATATAAAATAGAAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18817</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>121270</contig_pos>
        <strand>+</strand>
        <context>GTCCTCCTCC[G/T]AATCCCTCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGGCCATCCACTCGGCCGCCCATTGTCCATTTCCGTCTAGTCCTCCTCC</left_flank>
        <right_flank>AATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAGAAATGGTCCAACATTCATCTGGTGTGTTCTTAAAGCCATTTTAACATGGTGGCCTAACTTTTTTAAAATGAAATTTCTAGGCCACCAATGTTTTTGGCCTAGAAATGATATTTCAGACTAGTTTCAGACTTTGTAGGTAGTTCAAAGTCTGAACAATGGTCAAAAATCGAGCAAAAACGACTAAAATCGCAAAAAAAATTTTTGATGGCCTAGAAATCCGGAAAACTCGGCCACCATCAAATGTCGCCAATTAGGGCCTGTTTAGAGCTTTCTAGGCTGGTTTTCGACTGTTTTTTGGGGTTTTTGGACCATTTTCAGCCTATTTAGACTCATTTTTCATGTTTTCAGGGCCGAATTCCCACCTTTTCCAGGCGTTTCTCCTCCTCCTTCTCCTCCTCCATTCTCTCCATTCTCCTCATTTTTCTGCCGTTTAAACTGCTCAAACTTGGCCATCCACTCGGCCGCCCATTGTCCATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGATTCTAGGCCATTCTGACTTGGTGGCCTAGGATCCCAAATTATAATATTTCTAGGCCACCGCTTTTAAAAAACGTTTTCAGGACGTTTTCGAGCAATTTTAGGCCCTTTTTAAAGACTTTTGGGAAAAAAAAACTTGGTGGCCTAGAAATCTCAAAATTTGGGTTTCTAGGCCACCACTCCTAAAACACGATTTTAGATGACTTTTGATAAGAAAATCAAGGATTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCC</canonical>
            <polymorphic>CTAGAAATGGTCCAACATTCATCTGGTGTGTTCTTAAAGCCATTTTAACATGGTGGCCTAACTTTTTTAAAATGAAATTTCTAGGCCACCAATGTTTTTGGCCTAGAAATGATATTTCAGACTAGTTTCAGACTTTGTAGGTAGTTCAAAGTCTGAACAATGGTCAAAAATCGAGCAAAAACGACTAAAATCGCAAAAAAAATTTTTGATGGCCTAGAAATCCGGAAAACTCGGCCACCATCAAATGTCGCCAATTAGGGCCTGTTTAGAGCTTTCTAGGCTGGTTTTCGACTGTTTTTTGGGGTTTTTGGACCATTTTCAGCCTATTTAGACTCATTTTTCATGTTTTCAGGGCCGAATTCCCACCTTTTCCAGGCGTTTCTCCTCCTCCTTCTCCTCCTCCATTCTCTCCATTCTCCTCATTTTTCTGCCGTTTAAACTGCTCAAACTTGGCCATCCACTCGGCCGCCCATTGTCCATTTCCGTCTAGTCCTCCTCCKAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGATTCTAGGCCATTCTGACTTGGTGGCCTAGGATCCCAAATTATAATATTTCTAGGCCACCGCTTTTAAAAAACGTTTTCAGGACGTTTTCGAGCAATTTTAGGCCCTTTTTAAAGACTTTTGGGAAAAAAAAACTTGGTGGCCTAGAAATCTCAAAATTTGGGTTTCTAGGCCACCACTCCTAAAACACGATTTTAGATGACTTTTGATAAGAAAATCAAGGATTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>331 273 169 138 68 21</canonical_bands>
                <polymorphic_bands>331 273 190 138 68</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>345 258 243 119 24 11</canonical_bands>
                <polymorphic_bands>588 258 119 24 11</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 273 138 68 21</canonical_bands>
                <polymorphic_bands>521 273 138 68</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACTCATTTTTCATGTTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGTTTCCAGTGGTACG</pcr_primer_p2>
		<pcr_amplicon_size>297</pcr_amplicon_size>
		<canonical_amplicon>AGACTCATTTTTCATGTTTTCAGGGCCGAATTCCCACCTTTTCCAGGCGTTTCTCCTCCTCCTTCTCCTCCTCCATTCTCTCCATTCTCCTCATTTTTCTGCCGTTTAAACTGCTCAAACTTGGCCATCCACTCGGCCGCCCATTGTCCATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AGACTCATTTTTCATGTTTTCAGGGCCGAATTCCCACCTTTTCCAGGCGTTTCTCCTCCTCCTTCTCCTCCTCCATTCTCTCCATTCTCCTCATTTTTCTGCCGTTTAAACTGCTCAAACTTGGCCATCCACTCGGCCGCCCATTGTCCATTTCCGTCTAGTCCTCCTCCKAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18819</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>121337</contig_pos>
        <strand>+</strand>
        <context>GTCGAACCAT[G/T]CGGGAAGTKT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCAT</left_flank>
        <right_flank>CGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAATGAAATTTCTAGGCCACCAATGTTTTTGGCCTAGAAATGATATTTCAGACTAGTTTCAGACTTTGTAGGTAGTTCAAAGTCTGAACAATGGTCAAAAATCGAGCAAAAACGACTAAAATCGCAAAAAAAATTTTTGATGGCCTAGAAATCCGGAAAACTCGGCCACCATCAAATGTCGCCAATTAGGGCCTGTTTAGAGCTTTCTAGGCTGGTTTTCGACTGTTTTTTGGGGTTTTTGGACCATTTTCAGCCTATTTAGACTCATTTTTCATGTTTTCAGGGCCGAATTCCCACCTTTTCCAGGCGTTTCTCCTCCTCCTTCTCCTCCTCCATTCTCTCCATTCTCCTCATTTTTCTGCCGTTTAAACTGCTCAAACTTGGCCATCCACTCGGCCGCCCATTGTCCATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGATTCTAGGCCATTCTGACTTGGTGGCCTAGGATCCCAAATTATAATATTTCTAGGCCACCGCTTTTAAAAAACGTTTTCAGGACGTTTTCGAGCAATTTTAGGCCCTTTTTAAAGACTTTTGGGAAAAAAAAACTTGGTGGCCTAGAAATCTCAAAATTTGGGTTTCTAGGCCACCACTCCTAAAACACGATTTTAGATGACTTTTGATAAGAAAATCAAGGATTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGTTTCTAGGCCATTCTGACTTGATGGCCTAGGATCCCAAATTATGAT</canonical>
            <polymorphic>TAAAATGAAATTTCTAGGCCACCAATGTTTTTGGCCTAGAAATGATATTTCAGACTAGTTTCAGACTTTGTAGGTAGTTCAAAGTCTGAACAATGGTCAAAAATCGAGCAAAAACGACTAAAATCGCAAAAAAAATTTTTGATGGCCTAGAAATCCGGAAAACTCGGCCACCATCAAATGTCGCCAATTAGGGCCTGTTTAGAGCTTTCTAGGCTGGTTTTCGACTGTTTTTTGGGGTTTTTGGACCATTTTCAGCCTATTTAGACTCATTTTTCATGTTTTCAGGGCCGAATTCCCACCTTTTCCAGGCGTTTCTCCTCCTCCTTCTCCTCCTCCATTCTCTCCATTCTCCTCATTTTTCTGCCGTTTAAACTGCTCAAACTTGGCCATCCACTCGGCCGCCCATTGTCCATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATKCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGATTCTAGGCCATTCTGACTTGGTGGCCTAGGATCCCAAATTATAATATTTCTAGGCCACCGCTTTTAAAAAACGTTTTCAGGACGTTTTCGAGCAATTTTAGGCCCTTTTTAAAGACTTTTGGGAAAAAAAAACTTGGTGGCCTAGAAATCTCAAAATTTGGGTTTCTAGGCCACCACTCCTAAAACACGATTTTAGATGACTTTTGATAAGAAAATCAAGGATTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGTTTCTAGGCCATTCTGACTTGATGGCCTAGGATCCCAAATTATGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>294 275 222 108 101</canonical_bands>
                <polymorphic_bands>330 294 275 101</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTTCCGTCTAGTCCTCCT</pcr_primer_p1>
		<pcr_primer_p2>CTCGAATTCGTGAGTTTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAG</canonical_amplicon>
		<polymorphic_amplicon>CATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATKCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18820</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>121346</contig_pos>
        <strand>+</strand>
        <context>TKCGGGAAGT[G/T]TCAGGTCCGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGT</left_flank>
        <right_flank>TCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCTAGGCCACCAATGTTTTTGGCCTAGAAATGATATTTCAGACTAGTTTCAGACTTTGTAGGTAGTTCAAAGTCTGAACAATGGTCAAAAATCGAGCAAAAACGACTAAAATCGCAAAAAAAATTTTTGATGGCCTAGAAATCCGGAAAACTCGGCCACCATCAAATGTCGCCAATTAGGGCCTGTTTAGAGCTTTCTAGGCTGGTTTTCGACTGTTTTTTGGGGTTTTTGGACCATTTTCAGCCTATTTAGACTCATTTTTCATGTTTTCAGGGCCGAATTCCCACCTTTTCCAGGCGTTTCTCCTCCTCCTTCTCCTCCTCCATTCTCTCCATTCTCCTCATTTTTCTGCCGTTTAAACTGCTCAAACTTGGCCATCCACTCGGCCGCCCATTGTCCATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGATTCTAGGCCATTCTGACTTGGTGGCCTAGGATCCCAAATTATAATATTTCTAGGCCACCGCTTTTAAAAAACGTTTTCAGGACGTTTTCGAGCAATTTTAGGCCCTTTTTAAAGACTTTTGGGAAAAAAAAACTTGGTGGCCTAGAAATCTCAAAATTTGGGTTTCTAGGCCACCACTCCTAAAACACGATTTTAGATGACTTTTGATAAGAAAATCAAGGATTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGTTTCTAGGCCATTCTGACTTGATGGCCTAGGATCCCAAATTATGATATTTCTAGG</canonical>
            <polymorphic>ATTTCTAGGCCACCAATGTTTTTGGCCTAGAAATGATATTTCAGACTAGTTTCAGACTTTGTAGGTAGTTCAAAGTCTGAACAATGGTCAAAAATCGAGCAAAAACGACTAAAATCGCAAAAAAAATTTTTGATGGCCTAGAAATCCGGAAAACTCGGCCACCATCAAATGTCGCCAATTAGGGCCTGTTTAGAGCTTTCTAGGCTGGTTTTCGACTGTTTTTTGGGGTTTTTGGACCATTTTCAGCCTATTTAGACTCATTTTTCATGTTTTCAGGGCCGAATTCCCACCTTTTCCAGGCGTTTCTCCTCCTCCTTCTCCTCCTCCATTCTCTCCATTCTCCTCATTTTTCTGCCGTTTAAACTGCTCAAACTTGGCCATCCACTCGGCCGCCCATTGTCCATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTKTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGATTCTAGGCCATTCTGACTTGGTGGCCTAGGATCCCAAATTATAATATTTCTAGGCCACCGCTTTTAAAAAACGTTTTCAGGACGTTTTCGAGCAATTTTAGGCCCTTTTTAAAGACTTTTGGGAAAAAAAAACTTGGTGGCCTAGAAATCTCAAAATTTGGGTTTCTAGGCCACCACTCCTAAAACACGATTTTAGATGACTTTTGATAAGAAAATCAAGGATTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGTTTCTAGGCCATTCTGACTTGATGGCCTAGGATCCCAAATTATGATATTTCTAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>149 128 95 90 82 82 68 65 37 34 34 34 32 16 14 14 12 11 3</canonical_bands>
                <polymorphic_bands>149 128 95 90 82 82 69 68 65 34 34 34 16 14 14 12 11 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTTCCGTCTAGTCCTCCT</pcr_primer_p1>
		<pcr_primer_p2>CTCGAATTCGTGAGTTTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAG</canonical_amplicon>
		<polymorphic_amplicon>CATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTKTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18821</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>121375</contig_pos>
        <strand>+</strand>
        <context>ATTTCCATTC[C/T]TCGTACCACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTC</left_flank>
        <right_flank>TCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATGATATTTCAGACTAGTTTCAGACTTTGTAGGTAGTTCAAAGTCTGAACAATGGTCAAAAATCGAGCAAAAACGACTAAAATCGCAAAAAAAATTTTTGATGGCCTAGAAATCCGGAAAACTCGGCCACCATCAAATGTCGCCAATTAGGGCCTGTTTAGAGCTTTCTAGGCTGGTTTTCGACTGTTTTTTGGGGTTTTTGGACCATTTTCAGCCTATTTAGACTCATTTTTCATGTTTTCAGGGCCGAATTCCCACCTTTTCCAGGCGTTTCTCCTCCTCCTTCTCCTCCTCCATTCTCTCCATTCTCCTCATTTTTCTGCCGTTTAAACTGCTCAAACTTGGCCATCCACTCGGCCGCCCATTGTCCATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGATTCTAGGCCATTCTGACTTGGTGGCCTAGGATCCCAAATTATAATATTTCTAGGCCACCGCTTTTAAAAAACGTTTTCAGGACGTTTTCGAGCAATTTTAGGCCCTTTTTAAAGACTTTTGGGAAAAAAAAACTTGGTGGCCTAGAAATCTCAAAATTTGGGTTTCTAGGCCACCACTCCTAAAACACGATTTTAGATGACTTTTGATAAGAAAATCAAGGATTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGTTTCTAGGCCATTCTGACTTGATGGCCTAGGATCCCAAATTATGATATTTCTAGGCCACCAAGTCCTAAAAGCGATTTTAAAAC</canonical>
            <polymorphic>GAAATGATATTTCAGACTAGTTTCAGACTTTGTAGGTAGTTCAAAGTCTGAACAATGGTCAAAAATCGAGCAAAAACGACTAAAATCGCAAAAAAAATTTTTGATGGCCTAGAAATCCGGAAAACTCGGCCACCATCAAATGTCGCCAATTAGGGCCTGTTTAGAGCTTTCTAGGCTGGTTTTCGACTGTTTTTTGGGGTTTTTGGACCATTTTCAGCCTATTTAGACTCATTTTTCATGTTTTCAGGGCCGAATTCCCACCTTTTCCAGGCGTTTCTCCTCCTCCTTCTCCTCCTCCATTCTCTCCATTCTCCTCATTTTTCTGCCGTTTAAACTGCTCAAACTTGGCCATCCACTCGGCCGCCCATTGTCCATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCYTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGATTCTAGGCCATTCTGACTTGGTGGCCTAGGATCCCAAATTATAATATTTCTAGGCCACCGCTTTTAAAAAACGTTTTCAGGACGTTTTCGAGCAATTTTAGGCCCTTTTTAAAGACTTTTGGGAAAAAAAAACTTGGTGGCCTAGAAATCTCAAAATTTGGGTTTCTAGGCCACCACTCCTAAAACACGATTTTAGATGACTTTTGATAAGAAAATCAAGGATTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGTTTCTAGGCCATTCTGACTTGATGGCCTAGGATCCCAAATTATGATATTTCTAGGCCACCAAGTCCTAAAAGCGATTTTAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTCCGTCTAGTCCTCCT</pcr_primer_p1>
		<pcr_primer_p2>CTCGAATTCGTGAGTTTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAG</canonical_amplicon>
		<polymorphic_amplicon>CATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCYTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18822</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>121415</contig_pos>
        <strand>+</strand>
        <context>TTAGGGGGCC[A/G]AAAATGAAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCC</left_flank>
        <right_flank>AAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAGTCTGAACAATGGTCAAAAATCGAGCAAAAACGACTAAAATCGCAAAAAAAATTTTTGATGGCCTAGAAATCCGGAAAACTCGGCCACCATCAAATGTCGCCAATTAGGGCCTGTTTAGAGCTTTCTAGGCTGGTTTTCGACTGTTTTTTGGGGTTTTTGGACCATTTTCAGCCTATTTAGACTCATTTTTCATGTTTTCAGGGCCGAATTCCCACCTTTTCCAGGCGTTTCTCCTCCTCCTTCTCCTCCTCCATTCTCTCCATTCTCCTCATTTTTCTGCCGTTTAAACTGCTCAAACTTGGCCATCCACTCGGCCGCCCATTGTCCATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGATTCTAGGCCATTCTGACTTGGTGGCCTAGGATCCCAAATTATAATATTTCTAGGCCACCGCTTTTAAAAAACGTTTTCAGGACGTTTTCGAGCAATTTTAGGCCCTTTTTAAAGACTTTTGGGAAAAAAAAACTTGGTGGCCTAGAAATCTCAAAATTTGGGTTTCTAGGCCACCACTCCTAAAACACGATTTTAGATGACTTTTGATAAGAAAATCAAGGATTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGTTTCTAGGCCATTCTGACTTGATGGCCTAGGATCCCAAATTATGATATTTCTAGGCCACCAAGTCCTAAAAGCGATTTTAAAACGTTTTTGAGCAATATTAGGTCATTTTTGAAGCATTTCTGG</canonical>
            <polymorphic>TCAAAGTCTGAACAATGGTCAAAAATCGAGCAAAAACGACTAAAATCGCAAAAAAAATTTTTGATGGCCTAGAAATCCGGAAAACTCGGCCACCATCAAATGTCGCCAATTAGGGCCTGTTTAGAGCTTTCTAGGCTGGTTTTCGACTGTTTTTTGGGGTTTTTGGACCATTTTCAGCCTATTTAGACTCATTTTTCATGTTTTCAGGGCCGAATTCCCACCTTTTCCAGGCGTTTCTCCTCCTCCTTCTCCTCCTCCATTCTCTCCATTCTCCTCATTTTTCTGCCGTTTAAACTGCTCAAACTTGGCCATCCACTCGGCCGCCCATTGTCCATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCRAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGATTCTAGGCCATTCTGACTTGGTGGCCTAGGATCCCAAATTATAATATTTCTAGGCCACCGCTTTTAAAAAACGTTTTCAGGACGTTTTCGAGCAATTTTAGGCCCTTTTTAAAGACTTTTGGGAAAAAAAAACTTGGTGGCCTAGAAATCTCAAAATTTGGGTTTCTAGGCCACCACTCCTAAAACACGATTTTAGATGACTTTTGATAAGAAAATCAAGGATTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGTTTCTAGGCCATTCTGACTTGATGGCCTAGGATCCCAAATTATGATATTTCTAGGCCACCAAGTCCTAAAAGCGATTTTAAAACGTTTTTGAGCAATATTAGGTCATTTTTGAAGCATTTCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTCCGTCTAGTCCTCCT</pcr_primer_p1>
		<pcr_primer_p2>CTCGAATTCGTGAGTTTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAG</canonical_amplicon>
		<polymorphic_amplicon>CATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCRAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18823</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>121438</contig_pos>
        <strand>+</strand>
        <context>TTCAGGTTGC[A/G]AATCATGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGC</left_flank>
        <right_flank>AATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCGAGCAAAAACGACTAAAATCGCAAAAAAAATTTTTGATGGCCTAGAAATCCGGAAAACTCGGCCACCATCAAATGTCGCCAATTAGGGCCTGTTTAGAGCTTTCTAGGCTGGTTTTCGACTGTTTTTTGGGGTTTTTGGACCATTTTCAGCCTATTTAGACTCATTTTTCATGTTTTCAGGGCCGAATTCCCACCTTTTCCAGGCGTTTCTCCTCCTCCTTCTCCTCCTCCATTCTCTCCATTCTCCTCATTTTTCTGCCGTTTAAACTGCTCAAACTTGGCCATCCACTCGGCCGCCCATTGTCCATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGATTCTAGGCCATTCTGACTTGGTGGCCTAGGATCCCAAATTATAATATTTCTAGGCCACCGCTTTTAAAAAACGTTTTCAGGACGTTTTCGAGCAATTTTAGGCCCTTTTTAAAGACTTTTGGGAAAAAAAAACTTGGTGGCCTAGAAATCTCAAAATTTGGGTTTCTAGGCCACCACTCCTAAAACACGATTTTAGATGACTTTTGATAAGAAAATCAAGGATTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGTTTCTAGGCCATTCTGACTTGATGGCCTAGGATCCCAAATTATGATATTTCTAGGCCACCAAGTCCTAAAAGCGATTTTAAAACGTTTTTGAGCAATATTAGGTCATTTTTGAAGCATTTCTGGCTCAAATATTTGGTGGCCTAGAA</canonical>
            <polymorphic>AATCGAGCAAAAACGACTAAAATCGCAAAAAAAATTTTTGATGGCCTAGAAATCCGGAAAACTCGGCCACCATCAAATGTCGCCAATTAGGGCCTGTTTAGAGCTTTCTAGGCTGGTTTTCGACTGTTTTTTGGGGTTTTTGGACCATTTTCAGCCTATTTAGACTCATTTTTCATGTTTTCAGGGCCGAATTCCCACCTTTTCCAGGCGTTTCTCCTCCTCCTTCTCCTCCTCCATTCTCTCCATTCTCCTCATTTTTCTGCCGTTTAAACTGCTCAAACTTGGCCATCCACTCGGCCGCCCATTGTCCATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCRAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGATTCTAGGCCATTCTGACTTGGTGGCCTAGGATCCCAAATTATAATATTTCTAGGCCACCGCTTTTAAAAAACGTTTTCAGGACGTTTTCGAGCAATTTTAGGCCCTTTTTAAAGACTTTTGGGAAAAAAAAACTTGGTGGCCTAGAAATCTCAAAATTTGGGTTTCTAGGCCACCACTCCTAAAACACGATTTTAGATGACTTTTGATAAGAAAATCAAGGATTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGTTTCTAGGCCATTCTGACTTGATGGCCTAGGATCCCAAATTATGATATTTCTAGGCCACCAAGTCCTAAAAGCGATTTTAAAACGTTTTTGAGCAATATTAGGTCATTTTTGAAGCATTTCTGGCTCAAATATTTGGTGGCCTAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>498 294 208</canonical_bands>
                <polymorphic_bands>792 208</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTTCCGTCTAGTCCTCCT</pcr_primer_p1>
		<pcr_primer_p2>CTCGAATTCGTGAGTTTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAG</canonical_amplicon>
		<polymorphic_amplicon>CATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCRAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18824</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>121457</contig_pos>
        <strand>+</strand>
        <context>AAAATTGACC[C/T]ARAAATSGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACC</left_flank>
        <right_flank>AGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGATTCTAGGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATCGCAAAAAAAATTTTTGATGGCCTAGAAATCCGGAAAACTCGGCCACCATCAAATGTCGCCAATTAGGGCCTGTTTAGAGCTTTCTAGGCTGGTTTTCGACTGTTTTTTGGGGTTTTTGGACCATTTTCAGCCTATTTAGACTCATTTTTCATGTTTTCAGGGCCGAATTCCCACCTTTTCCAGGCGTTTCTCCTCCTCCTTCTCCTCCTCCATTCTCTCCATTCTCCTCATTTTTCTGCCGTTTAAACTGCTCAAACTTGGCCATCCACTCGGCCGCCCATTGTCCATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGATTCTAGGCCATTCTGACTTGGTGGCCTAGGATCCCAAATTATAATATTTCTAGGCCACCGCTTTTAAAAAACGTTTTCAGGACGTTTTCGAGCAATTTTAGGCCCTTTTTAAAGACTTTTGGGAAAAAAAAACTTGGTGGCCTAGAAATCTCAAAATTTGGGTTTCTAGGCCACCACTCCTAAAACACGATTTTAGATGACTTTTGATAAGAAAATCAAGGATTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGTTTCTAGGCCATTCTGACTTGATGGCCTAGGATCCCAAATTATGATATTTCTAGGCCACCAAGTCCTAAAAGCGATTTTAAAACGTTTTTGAGCAATATTAGGTCATTTTTGAAGCATTTCTGGCTCAAATATTTGGTGGCCTAGAAAATTCAAAATTCGGGTTTC</canonical>
            <polymorphic>AAATCGCAAAAAAAATTTTTGATGGCCTAGAAATCCGGAAAACTCGGCCACCATCAAATGTCGCCAATTAGGGCCTGTTTAGAGCTTTCTAGGCTGGTTTTCGACTGTTTTTTGGGGTTTTTGGACCATTTTCAGCCTATTTAGACTCATTTTTCATGTTTTCAGGGCCGAATTCCCACCTTTTCCAGGCGTTTCTCCTCCTCCTTCTCCTCCTCCATTCTCTCCATTCTCCTCATTTTTCTGCCGTTTAAACTGCTCAAACTTGGCCATCCACTCGGCCGCCCATTGTCCATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCYAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGATTCTAGGCCATTCTGACTTGGTGGCCTAGGATCCCAAATTATAATATTTCTAGGCCACCGCTTTTAAAAAACGTTTTCAGGACGTTTTCGAGCAATTTTAGGCCCTTTTTAAAGACTTTTGGGAAAAAAAAACTTGGTGGCCTAGAAATCTCAAAATTTGGGTTTCTAGGCCACCACTCCTAAAACACGATTTTAGATGACTTTTGATAAGAAAATCAAGGATTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGTTTCTAGGCCATTCTGACTTGATGGCCTAGGATCCCAAATTATGATATTTCTAGGCCACCAAGTCCTAAAAGCGATTTTAAAACGTTTTTGAGCAATATTAGGTCATTTTTGAAGCATTTCTGGCTCAAATATTTGGTGGCCTAGAAAATTCAAAATTCGGGTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>211 199 92 91 86 62 27 25 25 24 24 24 24 23 23 20 20</canonical_bands>
                <polymorphic_bands>219 211 92 91 86 62 27 25 25 24 24 24 24 23 23 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTACCACTGGAAACAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TAACCCCAGATTCCTTCATT</pcr_primer_p2>
		<pcr_amplicon_size>647</pcr_amplicon_size>
		<canonical_amplicon>CGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCC</canonical_amplicon>
		<polymorphic_amplicon>CGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCYAGAAATCGTTTTGGTGGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18825</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>121459</contig_pos>
        <strand>+</strand>
        <context>AATTGACCYA[A/G]AAATSGTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTA</left_flank>
        <right_flank>AAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGATTCTAGGCCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGCAAAAAAAATTTTTGATGGCCTAGAAATCCGGAAAACTCGGCCACCATCAAATGTCGCCAATTAGGGCCTGTTTAGAGCTTTCTAGGCTGGTTTTCGACTGTTTTTTGGGGTTTTTGGACCATTTTCAGCCTATTTAGACTCATTTTTCATGTTTTCAGGGCCGAATTCCCACCTTTTCCAGGCGTTTCTCCTCCTCCTTCTCCTCCTCCATTCTCTCCATTCTCCTCATTTTTCTGCCGTTTAAACTGCTCAAACTTGGCCATCCACTCGGCCGCCCATTGTCCATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGATTCTAGGCCATTCTGACTTGGTGGCCTAGGATCCCAAATTATAATATTTCTAGGCCACCGCTTTTAAAAAACGTTTTCAGGACGTTTTCGAGCAATTTTAGGCCCTTTTTAAAGACTTTTGGGAAAAAAAAACTTGGTGGCCTAGAAATCTCAAAATTTGGGTTTCTAGGCCACCACTCCTAAAACACGATTTTAGATGACTTTTGATAAGAAAATCAAGGATTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGTTTCTAGGCCATTCTGACTTGATGGCCTAGGATCCCAAATTATGATATTTCTAGGCCACCAAGTCCTAAAAGCGATTTTAAAACGTTTTTGAGCAATATTAGGTCATTTTTGAAGCATTTCTGGCTCAAATATTTGGTGGCCTAGAAAATTCAAAATTCGGGTTTCTA</canonical>
            <polymorphic>ATCGCAAAAAAAATTTTTGATGGCCTAGAAATCCGGAAAACTCGGCCACCATCAAATGTCGCCAATTAGGGCCTGTTTAGAGCTTTCTAGGCTGGTTTTCGACTGTTTTTTGGGGTTTTTGGACCATTTTCAGCCTATTTAGACTCATTTTTCATGTTTTCAGGGCCGAATTCCCACCTTTTCCAGGCGTTTCTCCTCCTCCTTCTCCTCCTCCATTCTCTCCATTCTCCTCATTTTTCTGCCGTTTAAACTGCTCAAACTTGGCCATCCACTCGGCCGCCCATTGTCCATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTARAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGATTCTAGGCCATTCTGACTTGGTGGCCTAGGATCCCAAATTATAATATTTCTAGGCCACCGCTTTTAAAAAACGTTTTCAGGACGTTTTCGAGCAATTTTAGGCCCTTTTTAAAGACTTTTGGGAAAAAAAAACTTGGTGGCCTAGAAATCTCAAAATTTGGGTTTCTAGGCCACCACTCCTAAAACACGATTTTAGATGACTTTTGATAAGAAAATCAAGGATTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGTTTCTAGGCCATTCTGACTTGATGGCCTAGGATCCCAAATTATGATATTTCTAGGCCACCAAGTCCTAAAAGCGATTTTAAAACGTTTTTGAGCAATATTAGGTCATTTTTGAAGCATTTCTGGCTCAAATATTTGGTGGCCTAGAAAATTCAAAATTCGGGTTTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>211 199 92 91 86 62 26 25 25 25 24 24 24 23 23 20 20</canonical_bands>
                <polymorphic_bands>219 211 92 91 86 62 26 25 25 25 24 24 24 23 23 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTACCACTGGAAACAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TAACCCCAGATTCCTTCATT</pcr_primer_p2>
		<pcr_amplicon_size>647</pcr_amplicon_size>
		<canonical_amplicon>CGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTA</canonical_amplicon>
		<polymorphic_amplicon>CGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTARAAATCGTTTTGGTGGCCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18826</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>123741</contig_pos>
        <strand></strand>
        <context>aaacyaggcc[T/A]tccgagccca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGAAAAAATTTAAAAAAAATGTGGCCAAGAAAATGCGAAAAAACTAGGCC</left_flank>
        <right_flank>TCCGAGCCCATCCTAAATTCGTGGCCTAGAAATCCAAAAAACTAGGCCAC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATCACTTATAACAGCTCTAAGTGCACCAAAAAGCGTTAAATCTATGATTGGATAACCGTGGCCTAGAAATCCCCCCAAAAAAACTCGGCCATCAAAATCAAAAATAGATTCTAGAGTGAAAATGAGTCCTAATTCGTGATTTTTGATCGAAAAATTGTAAAAATCAGCTCAAAATACCCTATTCAGTGCATTTTTCGTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACCATCAAAAATTGGCCTGGAACGTGCAAAAAAGTTCCAATTTTTTGCAGAAAAGAGCATAAAAAGGGGGAGAAGAGGGTCGGGGGGAAGACATCAAAGATTAGACGGCAGGAGGGGGGAAATTTTATTATTTTCTAGTGTTCGATGAGCAATCGGAGGGCACGGGGAGGACGAAACAAAAAACCATGGCATCATCACTGATAAGGATTTTGATGATTGAAAAAATTTAAAAAAAATGTGGCCAAGAAAATGCGAAAAAACTAGGCCTTCCGAGCCCATCCTAAATTCGTGGCCTAGAAATCCAAAAAACTAGGCCACGGGTGACAAAAACCATGTTTTCTGGGTGTTTTTCCGCCTAGATTCCTGATTTCTGGTGTCCAGGAACCCTATTTTTCGCCAAAAATGATCAGAAAACGGTCAAAAATCGCAGAATAAATAAATAATTATAGGGGTCCAACATTTCCCGATTTTCGAGCTCCAAACATATTTCTATTTGTAGTTTGGTGGCCTAGAAACCCAAATCGAGTCCTAATTCGTGATTTTCCATGAAAATAATGGAAAAATGCCGTTTGAAATACCTTATTTCGAGCGTTTTTGGCTTGATGGCCTAGAAATCCCAAAAACTCGGCCACCAGTTTCAAAACCCGTATTATGGGGTCAGGGACCCTGGAAAAGCGTTTTTGTCAGTATGAAATATTAAGCTAAAAACTATTAGCTAAAAACCCACTTTTAACACCTCAAAAGCCATCCAAACCCCTAAATTCATGA</canonical>
            <polymorphic>AAAATCACTTATAACAGCTCTAAGTGCACCAAAAAGCGTTAAATCTATGATTGGATAACCGTGGCCTAGAAATCCCCCCAAAAAAACTCGGCCATCAAAATCAAAAATAGATTCTAGAGTGAAAATGAGTCCTAATTCGTGATTTTTGATCGAAAAATTGTAAAAATCAGCTCAAAATACCCTATTCAGTGCATTTTTCGTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACCATCAAAAATTGGCCTGGAACGTGCAAAAAAGTTCCAATTTTTTGCAGAAAAGAGCATAAAAAGGGGGAGAAGAGGGTCGGGGGGAAGACATCAAAGATTAGACGGCAGGAGGGGGGAAATTTTATTATTTTCTAGTGTTCGATGAGCAATCGGAGGGCACGGGGAGGACGAAACAAAAAACCATGGCATCATCACTGATAAGGATTTTGATGATTGAAAAAATTTAAAAAAAATGTGGCCAAGAAAATGCGAAAAAACTAGGCCWTCCGAGCCCATCCTAAATTCGTGGCCTAGAAATCCAAAAAACTAGGCCACGGGTGACAAAAACCATGTTTTCTGGGTGTTTTTCCGCCTAGATTCCTGATTTCTGGTGTCCAGGAACCCTATTTTTCGCCAAAAATGATCAGAAAACGGTCAAAAATCGCAGAATAAATAAATAATTATAGGGGTCCAACATTTCCCGATTTTCGAGCTCCAAACATATTTCTATTTGTAGTTTGGTGGCCTAGAAACCCAAATCGAGTCCTAATTCGTGATTTTCCATGAAAATAATGGAAAAATGCCGTTTGAAATACCTTATTTCGAGCGTTTTTGGCTTGATGGCCTAGAAATCCCAAAAACTCGGCCACCAGTTTCAAAACCCGTATTATGGGGTCAGGGACCCTGGAAAAGCGTTTTTGTCAGTATGAAATATTAAGCTAAAAACTATTAGCTAAAAACCCACTTTTAACACCTCAAAAGCCATCCAAACCCCTAAATTCATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGGCCT</site>
                <isoschizomers>
                    <enzyme>AatI</enzyme>
                    <enzyme>Eco147I</enzyme>
                    <enzyme>PceI</enzyme>
                    <enzyme>SseBI</enzyme>
                    <enzyme>StuI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>226 193 162 144 99 64 39 27 24 22</canonical_bands>
                <polymorphic_bands>226 193 162 144 99 64 51 39 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCATCATCACTGATAAGGATTT</pcr_primer_p1>
		<pcr_primer_p2>TTATTTATTCTGCGATTTTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCATCATCACTGATAAGGATTTTGATGATTGAAAAAATTTAAAAAAAATGTGGCCAAGAAAATGCGAAAAAACTAGGCCTTCCGAGCCCATCCTAAATTCGTGGCCTAGAAATCCAAAAAACTAGGCCACGGGTGACAAAAACCATGTTTTCTGGGTGTTTTTCCGCCTAGATTCCTGATTTCTGGTGTCCAGGAACCCTATTTTTCGCCAAAAATGATCAGAAAACGGTCAAAAATCGCAGAATAAATAA</canonical_amplicon>
		<polymorphic_amplicon>GCATCATCACTGATAAGGATTTTGATGATTGAAAAAATTTAAAAAAAATGTGGCCAAGAAAATGCGAAAAAACTAGGCCWTCCGAGCCCATCCTAAATTCGTGGCCTAGAAATCCAAAAAACTAGGCCACGGGTGACAAAAACCATGTTTTCTGGGTGTTTTTCCGCCTAGATTCCTGATTTCTGGTGTCCAGGAACCCTATTTTTCGCCAAAAATGATCAGAAAACGGTCAAAAATCGCAGAATAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18827</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>123735</contig_pos>
        <strand></strand>
        <context>gcgaaaaaac[T/C]aggccwtccg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GATGATTGAAAAAATTTAAAAAAAATGTGGCCAAGAAAATGCGAAAAAAC</left_flank>
        <right_flank>AGGCCTTCCGAGCCCATCCTAAATTCGTGGCCTAGAAATCCAAAAAACTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTCATAAAATCACTTATAACAGCTCTAAGTGCACCAAAAAGCGTTAAATCTATGATTGGATAACCGTGGCCTAGAAATCCCCCCAAAAAAACTCGGCCATCAAAATCAAAAATAGATTCTAGAGTGAAAATGAGTCCTAATTCGTGATTTTTGATCGAAAAATTGTAAAAATCAGCTCAAAATACCCTATTCAGTGCATTTTTCGTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACCATCAAAAATTGGCCTGGAACGTGCAAAAAAGTTCCAATTTTTTGCAGAAAAGAGCATAAAAAGGGGGAGAAGAGGGTCGGGGGGAAGACATCAAAGATTAGACGGCAGGAGGGGGGAAATTTTATTATTTTCTAGTGTTCGATGAGCAATCGGAGGGCACGGGGAGGACGAAACAAAAAACCATGGCATCATCACTGATAAGGATTTTGATGATTGAAAAAATTTAAAAAAAATGTGGCCAAGAAAATGCGAAAAAACTAGGCCTTCCGAGCCCATCCTAAATTCGTGGCCTAGAAATCCAAAAAACTAGGCCACGGGTGACAAAAACCATGTTTTCTGGGTGTTTTTCCGCCTAGATTCCTGATTTCTGGTGTCCAGGAACCCTATTTTTCGCCAAAAATGATCAGAAAACGGTCAAAAATCGCAGAATAAATAAATAATTATAGGGGTCCAACATTTCCCGATTTTCGAGCTCCAAACATATTTCTATTTGTAGTTTGGTGGCCTAGAAACCCAAATCGAGTCCTAATTCGTGATTTTCCATGAAAATAATGGAAAAATGCCGTTTGAAATACCTTATTTCGAGCGTTTTTGGCTTGATGGCCTAGAAATCCCAAAAACTCGGCCACCAGTTTCAAAACCCGTATTATGGGGTCAGGGACCCTGGAAAAGCGTTTTTGTCAGTATGAAATATTAAGCTAAAAACTATTAGCTAAAAACCCACTTTTAACACCTCAAAAGCCATCCAAACCCCTAAAT</canonical>
            <polymorphic>TGTCATAAAATCACTTATAACAGCTCTAAGTGCACCAAAAAGCGTTAAATCTATGATTGGATAACCGTGGCCTAGAAATCCCCCCAAAAAAACTCGGCCATCAAAATCAAAAATAGATTCTAGAGTGAAAATGAGTCCTAATTCGTGATTTTTGATCGAAAAATTGTAAAAATCAGCTCAAAATACCCTATTCAGTGCATTTTTCGTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACCATCAAAAATTGGCCTGGAACGTGCAAAAAAGTTCCAATTTTTTGCAGAAAAGAGCATAAAAAGGGGGAGAAGAGGGTCGGGGGGAAGACATCAAAGATTAGACGGCAGGAGGGGGGAAATTTTATTATTTTCTAGTGTTCGATGAGCAATCGGAGGGCACGGGGAGGACGAAACAAAAAACCATGGCATCATCACTGATAAGGATTTTGATGATTGAAAAAATTTAAAAAAAATGTGGCCAAGAAAATGCGAAAAAACYAGGCCTTCCGAGCCCATCCTAAATTCGTGGCCTAGAAATCCAAAAAACTAGGCCACGGGTGACAAAAACCATGTTTTCTGGGTGTTTTTCCGCCTAGATTCCTGATTTCTGGTGTCCAGGAACCCTATTTTTCGCCAAAAATGATCAGAAAACGGTCAAAAATCGCAGAATAAATAAATAATTATAGGGGTCCAACATTTCCCGATTTTCGAGCTCCAAACATATTTCTATTTGTAGTTTGGTGGCCTAGAAACCCAAATCGAGTCCTAATTCGTGATTTTCCATGAAAATAATGGAAAAATGCCGTTTGAAATACCTTATTTCGAGCGTTTTTGGCTTGATGGCCTAGAAATCCCAAAAACTCGGCCACCAGTTTCAAAACCCGTATTATGGGGTCAGGGACCCTGGAAAAGCGTTTTTGTCAGTATGAAATATTAAGCTAAAAACTATTAGCTAAAAACCCACTTTTAACACCTCAAAAGCCATCCAAACCCCTAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>157 154 153 126 99 96 72 48 46 33 16</canonical_bands>
                <polymorphic_bands>159 157 154 153 99 96 72 48 46 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCATCATCACTGATAAGGATTT</pcr_primer_p1>
		<pcr_primer_p2>TTATTTATTCTGCGATTTTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCATCATCACTGATAAGGATTTTGATGATTGAAAAAATTTAAAAAAAATGTGGCCAAGAAAATGCGAAAAAACTAGGCCTTCCGAGCCCATCCTAAATTCGTGGCCTAGAAATCCAAAAAACTAGGCCACGGGTGACAAAAACCATGTTTTCTGGGTGTTTTTCCGCCTAGATTCCTGATTTCTGGTGTCCAGGAACCCTATTTTTCGCCAAAAATGATCAGAAAACGGTCAAAAATCGCAGAATAAATAA</canonical_amplicon>
		<polymorphic_amplicon>GCATCATCACTGATAAGGATTTTGATGATTGAAAAAATTTAAAAAAAATGTGGCCAAGAAAATGCGAAAAAACYAGGCCTTCCGAGCCCATCCTAAATTCGTGGCCTAGAAATCCAAAAAACTAGGCCACGGGTGACAAAAACCATGTTTTCTGGGTGTTTTTCCGCCTAGATTCCTGATTTCTGGTGTCCAGGAACCCTATTTTTCGCCAAAAATGATCAGAAAACGGTCAAAAATCGCAGAATAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18829</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>123555</contig_pos>
        <strand>+</strand>
        <context>GAAGAGGGTS[G/T]GGGGGAAGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGTTCCAATTTTTTGCAGAAAAGAGCATAAAAAGGGGGAGAAGAGGGTC</left_flank>
        <right_flank>GGGGGAAGACATCAAAGATTAGACGGCAGGAGGGGGGAAATTTTATTATT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGAAAATCGGTCCTAAATCCTGATTTTCGATCAAAAAATTGCAAAAATTCCGTTCAAAATGCTCTATTCAGAGCGGTTTTCACTTGGTGGCCTAGAAATCCCAAAAACTCGGCCACTGGTCTCAAAATGGGGTTTTAGGGGTAAAGGACCACTGGGAAACCGTTTTTCAGCCTAAAAATGTCATAAAATCACTTATAACAGCTCTAAGTGCACCAAAAAGCGTTAAATCTATGATTGGATAACCGTGGCCTAGAAATCCCCCCAAAAAAACTCGGCCATCAAAATCAAAAATAGATTCTAGAGTGAAAATGAGTCCTAATTCGTGATTTTTGATCGAAAAATTGTAAAAATCAGCTCAAAATACCCTATTCAGTGCATTTTTCGTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACCATCAAAAATTGGCCTGGAACGTGCAAAAAAGTTCCAATTTTTTGCAGAAAAGAGCATAAAAAGGGGGAGAAGAGGGTCGGGGGGAAGACATCAAAGATTAGACGGCAGGAGGGGGGAAATTTTATTATTTTCTAGTGTTCGATGAGCAATCGGAGGGCACGGGGAGGACGAAACAAAAAACCATGGCATCATCACTGATAAGGATTTTGATGATTGAAAAAATTTAAAAAAAATGTGGCCAAGAAAATGCGAAAAAACTAGGCCTTCCGAGCCCATCCTAAATTCGTGGCCTAGAAATCCAAAAAACTAGGCCACGGGTGACAAAAACCATGTTTTCTGGGTGTTTTTCCGCCTAGATTCCTGATTTCTGGTGTCCAGGAACCCTATTTTTCGCCAAAAATGATCAGAAAACGGTCAAAAATCGCAGAATAAATAAATAATTATAGGGGTCCAACATTTCCCGATTTTCGAGCTCCAAACATATTTCTATTTGTAGTTTGGTGGCCTAGAAACCCAAATCGAGTCCTAATTCGTGATTTTCCATGAAAATAATGGAAAAATGCCGTTTGAAATACCTTA</canonical>
            <polymorphic>GGTGAAAATCGGTCCTAAATCCTGATTTTCGATCAAAAAATTGCAAAAATTCCGTTCAAAATGCTCTATTCAGAGCGGTTTTCACTTGGTGGCCTAGAAATCCCAAAAACTCGGCCACTGGTCTCAAAATGGGGTTTTAGGGGTAAAGGACCACTGGGAAACCGTTTTTCAGCCTAAAAATGTCATAAAATCACTTATAACAGCTCTAAGTGCACCAAAAAGCGTTAAATCTATGATTGGATAACCGTGGCCTAGAAATCCCCCCAAAAAAACTCGGCCATCAAAATCAAAAATAGATTCTAGAGTGAAAATGAGTCCTAATTCGTGATTTTTGATCGAAAAATTGTAAAAATCAGCTCAAAATACCCTATTCAGTGCATTTTTCGTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACCATCAAAAATTGGCCTGGAACGTGCAAAAAAGTTCCAATTTTTTGCAGAAAAGAGCATAAAAAGGGGGAGAAGAGGGTCKGGGGGAAGACATCAAAGATTAGACGGCAGGAGGGGGGAAATTTTATTATTTTCTAGTGTTCGATGAGCAATCGGAGGGCACGGGGAGGACGAAACAAAAAACCATGGCATCATCACTGATAAGGATTTTGATGATTGAAAAAATTTAAAAAAAATGTGGCCAAGAAAATGCGAAAAAACTAGGCCTTCCGAGCCCATCCTAAATTCGTGGCCTAGAAATCCAAAAAACTAGGCCACGGGTGACAAAAACCATGTTTTCTGGGTGTTTTTCCGCCTAGATTCCTGATTTCTGGTGTCCAGGAACCCTATTTTTCGCCAAAAATGATCAGAAAACGGTCAAAAATCGCAGAATAAATAAATAATTATAGGGGTCCAACATTTCCCGATTTTCGAGCTCCAAACATATTTCTATTTGTAGTTTGGTGGCCTAGAAACCCAAATCGAGTCCTAATTCGTGATTTTCCATGAAAATAATGGAAAAATGCCGTTTGAAATACCTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCCTAATTCGTGATTTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>GCTCATCGAACACTAGAAAATAA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>AGTCCTAATTCGTGATTTTTGATCGAAAAATTGTAAAAATCAGCTCAAAATACCCTATTCAGTGCATTTTTCGTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACCATCAAAAATTGGCCTGGAACGTGCAAAAAAGTTCCAATTTTTTGCAGAAAAGAGCATAAAAAGGGGGAGAAGAGGGTCGGGGGGAAGACATCAAAGATTAGACGGCAGGAGGGGGGAAATTTTATTATTTTCTAGTGTTCGATGAGC</canonical_amplicon>
		<polymorphic_amplicon>AGTCCTAATTCGTGATTTTTGATCGAAAAATTGTAAAAATCAGCTCAAAATACCCTATTCAGTGCATTTTTCGTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACCATCAAAAATTGGCCTGGAACGTGCAAAAAAGTTCCAATTTTTTGCAGAAAAGAGCATAAAAAGGGGGAGAAGAGGGTCKGGGGGAAGACATCAAAGATTAGACGGCAGGAGGGGGGAAATTTTATTATTTTCTAGTGTTCGATGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18830</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>123554</contig_pos>
        <strand>+</strand>
        <context>AGAAGAGGGT[C/G]KGGGGGAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAGTTCCAATTTTTTGCAGAAAAGAGCATAAAAAGGGGGAGAAGAGGGT</left_flank>
        <right_flank>GGGGGGAAGACATCAAAGATTAGACGGCAGGAGGGGGGAAATTTTATTAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGTGAAAATCGGTCCTAAATCCTGATTTTCGATCAAAAAATTGCAAAAATTCCGTTCAAAATGCTCTATTCAGAGCGGTTTTCACTTGGTGGCCTAGAAATCCCAAAAACTCGGCCACTGGTCTCAAAATGGGGTTTTAGGGGTAAAGGACCACTGGGAAACCGTTTTTCAGCCTAAAAATGTCATAAAATCACTTATAACAGCTCTAAGTGCACCAAAAAGCGTTAAATCTATGATTGGATAACCGTGGCCTAGAAATCCCCCCAAAAAAACTCGGCCATCAAAATCAAAAATAGATTCTAGAGTGAAAATGAGTCCTAATTCGTGATTTTTGATCGAAAAATTGTAAAAATCAGCTCAAAATACCCTATTCAGTGCATTTTTCGTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACCATCAAAAATTGGCCTGGAACGTGCAAAAAAGTTCCAATTTTTTGCAGAAAAGAGCATAAAAAGGGGGAGAAGAGGGTCGGGGGGAAGACATCAAAGATTAGACGGCAGGAGGGGGGAAATTTTATTATTTTCTAGTGTTCGATGAGCAATCGGAGGGCACGGGGAGGACGAAACAAAAAACCATGGCATCATCACTGATAAGGATTTTGATGATTGAAAAAATTTAAAAAAAATGTGGCCAAGAAAATGCGAAAAAACTAGGCCTTCCGAGCCCATCCTAAATTCGTGGCCTAGAAATCCAAAAAACTAGGCCACGGGTGACAAAAACCATGTTTTCTGGGTGTTTTTCCGCCTAGATTCCTGATTTCTGGTGTCCAGGAACCCTATTTTTCGCCAAAAATGATCAGAAAACGGTCAAAAATCGCAGAATAAATAAATAATTATAGGGGTCCAACATTTCCCGATTTTCGAGCTCCAAACATATTTCTATTTGTAGTTTGGTGGCCTAGAAACCCAAATCGAGTCCTAATTCGTGATTTTCCATGAAAATAATGGAAAAATGCCGTTTGAAATACCTT</canonical>
            <polymorphic>GGGTGAAAATCGGTCCTAAATCCTGATTTTCGATCAAAAAATTGCAAAAATTCCGTTCAAAATGCTCTATTCAGAGCGGTTTTCACTTGGTGGCCTAGAAATCCCAAAAACTCGGCCACTGGTCTCAAAATGGGGTTTTAGGGGTAAAGGACCACTGGGAAACCGTTTTTCAGCCTAAAAATGTCATAAAATCACTTATAACAGCTCTAAGTGCACCAAAAAGCGTTAAATCTATGATTGGATAACCGTGGCCTAGAAATCCCCCCAAAAAAACTCGGCCATCAAAATCAAAAATAGATTCTAGAGTGAAAATGAGTCCTAATTCGTGATTTTTGATCGAAAAATTGTAAAAATCAGCTCAAAATACCCTATTCAGTGCATTTTTCGTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACCATCAAAAATTGGCCTGGAACGTGCAAAAAAGTTCCAATTTTTTGCAGAAAAGAGCATAAAAAGGGGGAGAAGAGGGTSGGGGGGAAGACATCAAAGATTAGACGGCAGGAGGGGGGAAATTTTATTATTTTCTAGTGTTCGATGAGCAATCGGAGGGCACGGGGAGGACGAAACAAAAAACCATGGCATCATCACTGATAAGGATTTTGATGATTGAAAAAATTTAAAAAAAATGTGGCCAAGAAAATGCGAAAAAACTAGGCCTTCCGAGCCCATCCTAAATTCGTGGCCTAGAAATCCAAAAAACTAGGCCACGGGTGACAAAAACCATGTTTTCTGGGTGTTTTTCCGCCTAGATTCCTGATTTCTGGTGTCCAGGAACCCTATTTTTCGCCAAAAATGATCAGAAAACGGTCAAAAATCGCAGAATAAATAAATAATTATAGGGGTCCAACATTTCCCGATTTTCGAGCTCCAAACATATTTCTATTTGTAGTTTGGTGGCCTAGAAACCCAAATCGAGTCCTAATTCGTGATTTTCCATGAAAATAATGGAAAAATGCCGTTTGAAATACCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCCTAATTCGTGATTTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>GCTCATCGAACACTAGAAAATAA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>AGTCCTAATTCGTGATTTTTGATCGAAAAATTGTAAAAATCAGCTCAAAATACCCTATTCAGTGCATTTTTCGTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACCATCAAAAATTGGCCTGGAACGTGCAAAAAAGTTCCAATTTTTTGCAGAAAAGAGCATAAAAAGGGGGAGAAGAGGGTCGGGGGGAAGACATCAAAGATTAGACGGCAGGAGGGGGGAAATTTTATTATTTTCTAGTGTTCGATGAGC</canonical_amplicon>
		<polymorphic_amplicon>AGTCCTAATTCGTGATTTTTGATCGAAAAATTGTAAAAATCAGCTCAAAATACCCTATTCAGTGCATTTTTCGTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACCATCAAAAATTGGCCTGGAACGTGCAAAAAAGTTCCAATTTTTTGCAGAAAAGAGCATAAAAAGGGGGAGAAGAGGGTSGGGGGGAAGACATCAAAGATTAGACGGCAGGAGGGGGGAAATTTTATTATTTTCTAGTGTTCGATGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18831</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>123540</contig_pos>
        <strand>+</strand>
        <context>GCATAAAAAG[A/G]GGGAGAAGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGGAACGTGCAAAAAAGTTCCAATTTTTTGCAGAAAAGAGCATAAAAAG</left_flank>
        <right_flank>GGGAGAAGAGGGTCGGGGGGAAGACATCAAAGATTAGACGGCAGGAGGGG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTCGACTCTAGGGTGAAAATCGGTCCTAAATCCTGATTTTCGATCAAAAAATTGCAAAAATTCCGTTCAAAATGCTCTATTCAGAGCGGTTTTCACTTGGTGGCCTAGAAATCCCAAAAACTCGGCCACTGGTCTCAAAATGGGGTTTTAGGGGTAAAGGACCACTGGGAAACCGTTTTTCAGCCTAAAAATGTCATAAAATCACTTATAACAGCTCTAAGTGCACCAAAAAGCGTTAAATCTATGATTGGATAACCGTGGCCTAGAAATCCCCCCAAAAAAACTCGGCCATCAAAATCAAAAATAGATTCTAGAGTGAAAATGAGTCCTAATTCGTGATTTTTGATCGAAAAATTGTAAAAATCAGCTCAAAATACCCTATTCAGTGCATTTTTCGTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACCATCAAAAATTGGCCTGGAACGTGCAAAAAAGTTCCAATTTTTTGCAGAAAAGAGCATAAAAAGGGGGAGAAGAGGGTCGGGGGGAAGACATCAAAGATTAGACGGCAGGAGGGGGGAAATTTTATTATTTTCTAGTGTTCGATGAGCAATCGGAGGGCACGGGGAGGACGAAACAAAAAACCATGGCATCATCACTGATAAGGATTTTGATGATTGAAAAAATTTAAAAAAAATGTGGCCAAGAAAATGCGAAAAAACTAGGCCTTCCGAGCCCATCCTAAATTCGTGGCCTAGAAATCCAAAAAACTAGGCCACGGGTGACAAAAACCATGTTTTCTGGGTGTTTTTCCGCCTAGATTCCTGATTTCTGGTGTCCAGGAACCCTATTTTTCGCCAAAAATGATCAGAAAACGGTCAAAAATCGCAGAATAAATAAATAATTATAGGGGTCCAACATTTCCCGATTTTCGAGCTCCAAACATATTTCTATTTGTAGTTTGGTGGCCTAGAAACCCAAATCGAGTCCTAATTCGTGATTTTCCATGAAAATAATGGAAAAATGCC</canonical>
            <polymorphic>AAATTTCGACTCTAGGGTGAAAATCGGTCCTAAATCCTGATTTTCGATCAAAAAATTGCAAAAATTCCGTTCAAAATGCTCTATTCAGAGCGGTTTTCACTTGGTGGCCTAGAAATCCCAAAAACTCGGCCACTGGTCTCAAAATGGGGTTTTAGGGGTAAAGGACCACTGGGAAACCGTTTTTCAGCCTAAAAATGTCATAAAATCACTTATAACAGCTCTAAGTGCACCAAAAAGCGTTAAATCTATGATTGGATAACCGTGGCCTAGAAATCCCCCCAAAAAAACTCGGCCATCAAAATCAAAAATAGATTCTAGAGTGAAAATGAGTCCTAATTCGTGATTTTTGATCGAAAAATTGTAAAAATCAGCTCAAAATACCCTATTCAGTGCATTTTTCGTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACCATCAAAAATTGGCCTGGAACGTGCAAAAAAGTTCCAATTTTTTGCAGAAAAGAGCATAAAAAGRGGGAGAAGAGGGTCGGGGGGAAGACATCAAAGATTAGACGGCAGGAGGGGGGAAATTTTATTATTTTCTAGTGTTCGATGAGCAATCGGAGGGCACGGGGAGGACGAAACAAAAAACCATGGCATCATCACTGATAAGGATTTTGATGATTGAAAAAATTTAAAAAAAATGTGGCCAAGAAAATGCGAAAAAACTAGGCCTTCCGAGCCCATCCTAAATTCGTGGCCTAGAAATCCAAAAAACTAGGCCACGGGTGACAAAAACCATGTTTTCTGGGTGTTTTTCCGCCTAGATTCCTGATTTCTGGTGTCCAGGAACCCTATTTTTCGCCAAAAATGATCAGAAAACGGTCAAAAATCGCAGAATAAATAAATAATTATAGGGGTCCAACATTTCCCGATTTTCGAGCTCCAAACATATTTCTATTTGTAGTTTGGTGGCCTAGAAACCCAAATCGAGTCCTAATTCGTGATTTTCCATGAAAATAATGGAAAAATGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCCTAATTCGTGATTTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>GCTCATCGAACACTAGAAAATAA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>AGTCCTAATTCGTGATTTTTGATCGAAAAATTGTAAAAATCAGCTCAAAATACCCTATTCAGTGCATTTTTCGTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACCATCAAAAATTGGCCTGGAACGTGCAAAAAAGTTCCAATTTTTTGCAGAAAAGAGCATAAAAAGGGGGAGAAGAGGGTCGGGGGGAAGACATCAAAGATTAGACGGCAGGAGGGGGGAAATTTTATTATTTTCTAGTGTTCGATGAGC</canonical_amplicon>
		<polymorphic_amplicon>AGTCCTAATTCGTGATTTTTGATCGAAAAATTGTAAAAATCAGCTCAAAATACCCTATTCAGTGCATTTTTCGTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACCATCAAAAATTGGCCTGGAACGTGCAAAAAAGTTCCAATTTTTTGCAGAAAAGAGCATAAAAAGRGGGAGAAGAGGGTCGGGGGGAAGACATCAAAGATTAGACGGCAGGAGGGGGGAAATTTTATTATTTTCTAGTGTTCGATGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18839</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>4194</contig_pos>
        <strand>+</strand>
        <context>AAATTTTAAT[A/G]CATCTTGTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTGTGGTCCGAGCCGACTAAAATTGACCTATAGATTTTGAAATTTTAAT</left_flank>
        <right_flank>CATCTTGTACAAGTTTGGGAAAATCTATCTTGTTTTGTGCTTTTTTTCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATCAAATGATCAAAGAATGAAAACAGCGAGTTGGATTACGGTAGGTCAACATTTGGTAGGTCAAAAACTAAATCAGCGTACTGCCCGTCCCATATCGACACTAATGCAAAAAAGTACTACCCGGAAGCTCTACTATGAAAAAAGTTATGACCAAAACAAAATTTCCGAAAAAAGTTGTACCGCATTTGGGACGGACTATCACAAAAACTAAAAGAGTCATGTTCACTTAATTTTTTAAGAGCTATAACAAATTAGCTTTGTTCCACCTTTGGTTTGAAGCCACCCTCGAGCTCTTCACATTCTGATTATCTAAATATCAGATTTTTTGAGTTCCTAGACCATTCTGGGAAGAATATCTACAAGCCTAATACTTTACATTTGCAATATACAATTTGTTTATTTTTCAGACCATTGTTGGGGAGAAAAAATCAAAAATTTTTGTAATTTGTGTGGTCCGAGCCGACTAAAATTGACCTATAGATTTTGAAATTTTAATACATCTTGTACAAGTTTGGGAAAATCTATCTTGTTTTGTGCTTTTTTTCAGAATTTCCATGATGCCAATTTTGGGAATCCCGATAGAAGTAGATTTGGAATTATAGAAAAAAATAGTTCCGGAAGGCTGCATTTTTTTTCATGTAAGAATATATTTGCTTGTTAATATATTTATATTTCAAGCTTTTTACATACCCCAATTATTTATTCTTCAGTTTTTTATTTTTCTGGTCTTTCGTTTCCTGATCAACTCATTTTCATAATTGACAGCTACTAGACACATGTAGTTTGATGATTTTCTACTTGATGCGTGCTTTTTTTTGTATGATATGTCAAAAAAAATGATGATGTAATTCGAAACACCAGAAGTTGAAATTTATCAAATGACAGTTATTATTGAAAATAATTAATGTGAAGTAGCCACATTGTTCTGCACATCAATGATTAAATGGAATCCGGAAAAATAAGAATGAGATTGAGAGTGAAAGCTAGTGGTGAAATG</canonical>
            <polymorphic>TAAATCAAATGATCAAAGAATGAAAACAGCGAGTTGGATTACGGTAGGTCAACATTTGGTAGGTCAAAAACTAAATCAGCGTACTGCCCGTCCCATATCGACACTAATGCAAAAAAGTACTACCCGGAAGCTCTACTATGAAAAAAGTTATGACCAAAACAAAATTTCCGAAAAAAGTTGTACCGCATTTGGGACGGACTATCACAAAAACTAAAAGAGTCATGTTCACTTAATTTTTTAAGAGCTATAACAAATTAGCTTTGTTCCACCTTTGGTTTGAAGCCACCCTCGAGCTCTTCACATTCTGATTATCTAAATATCAGATTTTTTGAGTTCCTAGACCATTCTGGGAAGAATATCTACAAGCCTAATACTTTACATTTGCAATATACAATTTGTTTATTTTTCAGACCATTGTTGGGGAGAAAAAATCAAAAATTTTTGTAATTTGTGTGGTCCGAGCCGACTAAAATTGACCTATAGATTTTGAAATTTTAATRCATCTTGTACAAGTTTGGGAAAATCTATCTTGTTTTGTGCTTTTTTTCAGAATTTCCATGATGCCAATTTTGGGAATCCCGATAGAAGTAGATTTGGAATTATAGAAAAAAATAGTTCCGGAAGGCTGCATTTTTTTTCATGTAAGAATATATTTGCTTGTTAATATATTTATATTTCAAGCTTTTTACATACCCCAATTATTTATTCTTCAGTTTTTTATTTTTCTGGTCTTTCGTTTCCTGATCAACTCATTTTCATAATTGACAGCTACTAGACACATGTAGTTTGATGATTTTCTACTTGATGCGTGCTTTTTTTTGTATGATATGTCAAAAAAAATGATGATGTAATTCGAAACACCAGAAGTTGAAATTTATCAAATGACAGTTATTATTGAAAATAATTAATGTGAAGTAGCCACATTGTTCTGCACATCAATGATTAAATGGAATCCGGAAAAATAAGAATGAGATTGAGAGTGAAAGCTAGTGGTGAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGAAGAATATCTACAAGCCTAA</pcr_primer_p1>
		<pcr_primer_p2>CAAATCTACTTCTATCGGGATTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGGAAGAATATCTACAAGCCTAATACTTTACATTTGCAATATACAATTTGTTTATTTTTCAGACCATTGTTGGGGAGAAAAAATCAAAAATTTTTGTAATTTGTGTGGTCCGAGCCGACTAAAATTGACCTATAGATTTTGAAATTTTAATACATCTTGTACAAGTTTGGGAAAATCTATCTTGTTTTGTGCTTTTTTTCAGAATTTCCATGATGCCAATTTTGGGAATCCCGATAGAAGTAGATTTG</canonical_amplicon>
		<polymorphic_amplicon>GGGAAGAATATCTACAAGCCTAATACTTTACATTTGCAATATACAATTTGTTTATTTTTCAGACCATTGTTGGGGAGAAAAAATCAAAAATTTTTGTAATTTGTGTGGTCCGAGCCGACTAAAATTGACCTATAGATTTTGAAATTTTAATRCATCTTGTACAAGTTTGGGAAAATCTATCTTGTTTTGTGCTTTTTTTCAGAATTTCCATGATGCCAATTTTGGGAATCCCGATAGAAGTAGATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18840</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>4308</contig_pos>
        <strand>+</strand>
        <context>AGAAAAAAAT[A/G]GTTCCGGAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAATTTTGGGAATCCCGATAGAAGTAGATTTGGAATTATAGAAAAAAAT</left_flank>
        <right_flank>GTTCCGGAAGGCTGCATTTTTTTTCATGTAAGAATATATTTGCTTGTTAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTACTACCCGGAAGCTCTACTATGAAAAAAGTTATGACCAAAACAAAATTTCCGAAAAAAGTTGTACCGCATTTGGGACGGACTATCACAAAAACTAAAAGAGTCATGTTCACTTAATTTTTTAAGAGCTATAACAAATTAGCTTTGTTCCACCTTTGGTTTGAAGCCACCCTCGAGCTCTTCACATTCTGATTATCTAAATATCAGATTTTTTGAGTTCCTAGACCATTCTGGGAAGAATATCTACAAGCCTAATACTTTACATTTGCAATATACAATTTGTTTATTTTTCAGACCATTGTTGGGGAGAAAAAATCAAAAATTTTTGTAATTTGTGTGGTCCGAGCCGACTAAAATTGACCTATAGATTTTGAAATTTTAATACATCTTGTACAAGTTTGGGAAAATCTATCTTGTTTTGTGCTTTTTTTCAGAATTTCCATGATGCCAATTTTGGGAATCCCGATAGAAGTAGATTTGGAATTATAGAAAAAAATAGTTCCGGAAGGCTGCATTTTTTTTCATGTAAGAATATATTTGCTTGTTAATATATTTATATTTCAAGCTTTTTACATACCCCAATTATTTATTCTTCAGTTTTTTATTTTTCTGGTCTTTCGTTTCCTGATCAACTCATTTTCATAATTGACAGCTACTAGACACATGTAGTTTGATGATTTTCTACTTGATGCGTGCTTTTTTTTGTATGATATGTCAAAAAAAATGATGATGTAATTCGAAACACCAGAAGTTGAAATTTATCAAATGACAGTTATTATTGAAAATAATTAATGTGAAGTAGCCACATTGTTCTGCACATCAATGATTAAATGGAATCCGGAAAAATAAGAATGAGATTGAGAGTGAAAGCTAGTGGTGAAATGATTGTCTGTAGGATCAGAACCTGGCCTCCAAATACACAGTAACACTTTCCGGAGACGTAGTCGTACATCCTTGAATGCGAAGTTGCTCCTCAGTTTCAGGTCCAGCGACGATAG</canonical>
            <polymorphic>AAGTACTACCCGGAAGCTCTACTATGAAAAAAGTTATGACCAAAACAAAATTTCCGAAAAAAGTTGTACCGCATTTGGGACGGACTATCACAAAAACTAAAAGAGTCATGTTCACTTAATTTTTTAAGAGCTATAACAAATTAGCTTTGTTCCACCTTTGGTTTGAAGCCACCCTCGAGCTCTTCACATTCTGATTATCTAAATATCAGATTTTTTGAGTTCCTAGACCATTCTGGGAAGAATATCTACAAGCCTAATACTTTACATTTGCAATATACAATTTGTTTATTTTTCAGACCATTGTTGGGGAGAAAAAATCAAAAATTTTTGTAATTTGTGTGGTCCGAGCCGACTAAAATTGACCTATAGATTTTGAAATTTTAATACATCTTGTACAAGTTTGGGAAAATCTATCTTGTTTTGTGCTTTTTTTCAGAATTTCCATGATGCCAATTTTGGGAATCCCGATAGAAGTAGATTTGGAATTATAGAAAAAAATRGTTCCGGAAGGCTGCATTTTTTTTCATGTAAGAATATATTTGCTTGTTAATATATTTATATTTCAAGCTTTTTACATACCCCAATTATTTATTCTTCAGTTTTTTATTTTTCTGGTCTTTCGTTTCCTGATCAACTCATTTTCATAATTGACAGCTACTAGACACATGTAGTTTGATGATTTTCTACTTGATGCGTGCTTTTTTTTGTATGATATGTCAAAAAAAATGATGATGTAATTCGAAACACCAGAAGTTGAAATTTATCAAATGACAGTTATTATTGAAAATAATTAATGTGAAGTAGCCACATTGTTCTGCACATCAATGATTAAATGGAATCCGGAAAAATAAGAATGAGATTGAGAGTGAAAGCTAGTGGTGAAATGATTGTCTGTAGGATCAGAACCTGGCCTCCAAATACACAGTAACACTTTCCGGAGACGTAGTCGTACATCCTTGAATGCGAAGTTGCTCCTCAGTTTCAGGTCCAGCGACGATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATCTATCTTGTTTTGTGCT</pcr_primer_p1>
		<pcr_primer_p2>GCTGTCAATTATGAAAATGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAAAATCTATCTTGTTTTGTGCTTTTTTTCAGAATTTCCATGATGCCAATTTTGGGAATCCCGATAGAAGTAGATTTGGAATTATAGAAAAAAATAGTTCCGGAAGGCTGCATTTTTTTTCATGTAAGAATATATTTGCTTGTTAATATATTTATATTTCAAGCTTTTTACATACCCCAATTATTTATTCTTCAGTTTTTTATTTTTCTGGTCTTTCGTTTCCTGATCAACTCATTTTCATAATTGACAGC</canonical_amplicon>
		<polymorphic_amplicon>GAAAATCTATCTTGTTTTGTGCTTTTTTTCAGAATTTCCATGATGCCAATTTTGGGAATCCCGATAGAAGTAGATTTGGAATTATAGAAAAAAATRGTTCCGGAAGGCTGCATTTTTTTTCATGTAAGAATATATTTGCTTGTTAATATATTTATATTTCAAGCTTTTTACATACCCCAATTATTTATTCTTCAGTTTTTTATTTTTCTGGTCTTTCGTTTCCTGATCAACTCATTTTCATAATTGACAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18841</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>54102</contig_pos>
        <strand>+</strand>
        <context>GCCTATGAGA[A/G]AATAGAACAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATGACATTTCCCACGTGAGCCTTTACTTCTCGCGTGTGGCCTATGAGA</left_flank>
        <right_flank>AATAGAACAGCAAAAACAATTACAAACGGCCGATTTGTTATCCAACATTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCATTGGAAATTTCCACTTGTTTTCAACAACTTAGAGGTGAGCATTTTACAAAGACTTCAGCAATTTTGCACTGTACTAAACACCTATACAAAAATGTGTGTTTCAGGAAATGACAACCGTTGGGATGATGGATGTAATTGTCCGTCAGAGTGTAATCTTTTAGAATTTGACGTCACCAACAGCTACTCAGACTTGGATAGTAGGAGCAGAGGGTTTACTGGTTTTCAAGTTCAGTGAGTTCTTTTAAAGTATTCACCATGACTCTTTGAACTGGATTATCTAGCTTTTCACAAAAGATATCATAACTTTATCAACTGATAAATTTTTTCTTAAAACTACAAGCATTTTATCTGTGGAGAACTTTCTCGTATATCATAGCTCAAAGTTTATAGTAGCCCAAAAAATACATTTTTTCGGTATAATGCTTGTTTGTAAATGATTTTTCAGAAATGACATTTCCCACGTGAGCCTTTACTTCTCGCGTGTGGCCTATGAGAGAATAGAACAGCAAAAACAATTACAAACGGCCGATTTGTTATCCAACATTGCAGGAAGTATGGGACTATTCCTCGGAATGAGTACTGTGAGAAATAAAAAATTTCTGATATCCTAAACAATTTTTGTATCAGGTCACCCTTCTCGAGATCTTCATTTATCTTTTCAAATCCGTCTGGGGAACTGTAAACTCCACTAGGCAACAACAATTCGTTGATGCGGTTGCTGAAGAAGAGAAAGAACGAGCACAGAGTATCGTTATTATTCAAAATGGAGGCAACGATGAAGATACAGTAAGTTTTCATAAACCTAAAGGTTTGAAAATCAATTCGAGTTCCAGAAAATGCCAAGATTCCCCGCATCGGATCGAAAGATGTCTGGAAACTCGATTCATATTCATCTAGACAGAAGAAACAGTCGCATGGTAAGCTTTGGAAAGGTGTTTCAATTATTATAAAAGATTTTTCAGTTAAGAGGAGGAGATTTGTTCTCAGCTCCGCGTG</canonical>
            <polymorphic>ACCATTGGAAATTTCCACTTGTTTTCAACAACTTAGAGGTGAGCATTTTACAAAGACTTCAGCAATTTTGCACTGTACTAAACACCTATACAAAAATGTGTGTTTCAGGAAATGACAACCGTTGGGATGATGGATGTAATTGTCCGTCAGAGTGTAATCTTTTAGAATTTGACGTCACCAACAGCTACTCAGACTTGGATAGTAGGAGCAGAGGGTTTACTGGTTTTCAAGTTCAGTGAGTTCTTTTAAAGTATTCACCATGACTCTTTGAACTGGATTATCTAGCTTTTCACAAAAGATATCATAACTTTATCAACTGATAAATTTTTTCTTAAAACTACAAGCATTTTATCTGTGGAGAACTTTCTCGTATATCATAGCTCAAAGTTTATAGTAGCCCAAAAAATACATTTTTTCGGTATAATGCTTGTTTGTAAATGATTTTTCAGAAATGACATTTCCCACGTGAGCCTTTACTTCTCGCGTGTGGCCTATGAGARAATAGAACAGCAAAAACAATTACAAACGGCCGATTTGTTATCCAACATTGCAGGAAGTATGGGACTATTCCTCGGAATGAGTACTGTGAGAAATAAAAAATTTCTGATATCCTAAACAATTTTTGTATCAGGTCACCCTTCTCGAGATCTTCATTTATCTTTTCAAATCCGTCTGGGGAACTGTAAACTCCACTAGGCAACAACAATTCGTTGATGCGGTTGCTGAAGAAGAGAAAGAACGAGCACAGAGTATCGTTATTATTCAAAATGGAGGCAACGATGAAGATACAGTAAGTTTTCATAAACCTAAAGGTTTGAAAATCAATTCGAGTTCCAGAAAATGCCAAGATTCCCCGCATCGGATCGAAAGATGTCTGGAAACTCGATTCATATTCATCTAGACAGAAGAAACAGTCGCATGGTAAGCTTTGGAAAGGTGTTTCAATTATTATAAAAGATTTTTCAGTTAAGAGGAGGAGATTTGTTCTCAGCTCCGCGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGCTTGTTTGTAAATGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>GACGGATTTGAAAAGATAAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGCTTGTTTGTAAATGATTTTTCAGAAATGACATTTCCCACGTGAGCCTTTACTTCTCGCGTGTGGCCTATGAGAGAATAGAACAGCAAAAACAATTACAAACGGCCGATTTGTTATCCAACATTGCAGGAAGTATGGGACTATTCCTCGGAATGAGTACTGTGAGAAATAAAAAATTTCTGATATCCTAAACAATTTTTGTATCAGGTCACCCTTCTCGAGATCTTCATTTATCTTTTCAAATCCGTC</canonical_amplicon>
		<polymorphic_amplicon>ATGCTTGTTTGTAAATGATTTTTCAGAAATGACATTTCCCACGTGAGCCTTTACTTCTCGCGTGTGGCCTATGAGARAATAGAACAGCAAAAACAATTACAAACGGCCGATTTGTTATCCAACATTGCAGGAAGTATGGGACTATTCCTCGGAATGAGTACTGTGAGAAATAAAAAATTTCTGATATCCTAAACAATTTTTGTATCAGGTCACCCTTCTCGAGATCTTCATTTATCTTTTCAAATCCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18842</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>54198</contig_pos>
        <strand>+</strand>
        <context>GTGAGAAATA[A/C]AAAATTTCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATTGCAGGAAGTATGGGACTATTCCTCGGAATGAGTACTGTGAGAAATA</left_flank>
        <right_flank>AAAATTTCTGATATCCTAAACAATTTTTGTATCAGGTCACCCTTCTCGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGTGTTTCAGGAAATGACAACCGTTGGGATGATGGATGTAATTGTCCGTCAGAGTGTAATCTTTTAGAATTTGACGTCACCAACAGCTACTCAGACTTGGATAGTAGGAGCAGAGGGTTTACTGGTTTTCAAGTTCAGTGAGTTCTTTTAAAGTATTCACCATGACTCTTTGAACTGGATTATCTAGCTTTTCACAAAAGATATCATAACTTTATCAACTGATAAATTTTTTCTTAAAACTACAAGCATTTTATCTGTGGAGAACTTTCTCGTATATCATAGCTCAAAGTTTATAGTAGCCCAAAAAATACATTTTTTCGGTATAATGCTTGTTTGTAAATGATTTTTCAGAAATGACATTTCCCACGTGAGCCTTTACTTCTCGCGTGTGGCCTATGAGAGAATAGAACAGCAAAAACAATTACAAACGGCCGATTTGTTATCCAACATTGCAGGAAGTATGGGACTATTCCTCGGAATGAGTACTGTGAGAAATAAAAAATTTCTGATATCCTAAACAATTTTTGTATCAGGTCACCCTTCTCGAGATCTTCATTTATCTTTTCAAATCCGTCTGGGGAACTGTAAACTCCACTAGGCAACAACAATTCGTTGATGCGGTTGCTGAAGAAGAGAAAGAACGAGCACAGAGTATCGTTATTATTCAAAATGGAGGCAACGATGAAGATACAGTAAGTTTTCATAAACCTAAAGGTTTGAAAATCAATTCGAGTTCCAGAAAATGCCAAGATTCCCCGCATCGGATCGAAAGATGTCTGGAAACTCGATTCATATTCATCTAGACAGAAGAAACAGTCGCATGGTAAGCTTTGGAAAGGTGTTTCAATTATTATAAAAGATTTTTCAGTTAAGAGGAGGAGATTTGTTCTCAGCTCCGCGTGGATCTGTCAGCATCCCATCACAGCTGTTATCTCCACTCTCCAAGCATAGCAGGTAATAAGATACGTTGAAAAACCTACAATACCTCTCAATAAAAC</canonical>
            <polymorphic>TGTGTGTTTCAGGAAATGACAACCGTTGGGATGATGGATGTAATTGTCCGTCAGAGTGTAATCTTTTAGAATTTGACGTCACCAACAGCTACTCAGACTTGGATAGTAGGAGCAGAGGGTTTACTGGTTTTCAAGTTCAGTGAGTTCTTTTAAAGTATTCACCATGACTCTTTGAACTGGATTATCTAGCTTTTCACAAAAGATATCATAACTTTATCAACTGATAAATTTTTTCTTAAAACTACAAGCATTTTATCTGTGGAGAACTTTCTCGTATATCATAGCTCAAAGTTTATAGTAGCCCAAAAAATACATTTTTTCGGTATAATGCTTGTTTGTAAATGATTTTTCAGAAATGACATTTCCCACGTGAGCCTTTACTTCTCGCGTGTGGCCTATGAGAGAATAGAACAGCAAAAACAATTACAAACGGCCGATTTGTTATCCAACATTGCAGGAAGTATGGGACTATTCCTCGGAATGAGTACTGTGAGAAATAMAAAATTTCTGATATCCTAAACAATTTTTGTATCAGGTCACCCTTCTCGAGATCTTCATTTATCTTTTCAAATCCGTCTGGGGAACTGTAAACTCCACTAGGCAACAACAATTCGTTGATGCGGTTGCTGAAGAAGAGAAAGAACGAGCACAGAGTATCGTTATTATTCAAAATGGAGGCAACGATGAAGATACAGTAAGTTTTCATAAACCTAAAGGTTTGAAAATCAATTCGAGTTCCAGAAAATGCCAAGATTCCCCGCATCGGATCGAAAGATGTCTGGAAACTCGATTCATATTCATCTAGACAGAAGAAACAGTCGCATGGTAAGCTTTGGAAAGGTGTTTCAATTATTATAAAAGATTTTTCAGTTAAGAGGAGGAGATTTGTTCTCAGCTCCGCGTGGATCTGTCAGCATCCCATCACAGCTGTTATCTCCACTCTCCAAGCATAGCAGGTAATAAGATACGTTGAAAAACCTACAATACCTCTCAATAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGCTTGTTTGTAAATGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>GACGGATTTGAAAAGATAAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGCTTGTTTGTAAATGATTTTTCAGAAATGACATTTCCCACGTGAGCCTTTACTTCTCGCGTGTGGCCTATGAGAGAATAGAACAGCAAAAACAATTACAAACGGCCGATTTGTTATCCAACATTGCAGGAAGTATGGGACTATTCCTCGGAATGAGTACTGTGAGAAATAAAAAATTTCTGATATCCTAAACAATTTTTGTATCAGGTCACCCTTCTCGAGATCTTCATTTATCTTTTCAAATCCGTC</canonical_amplicon>
		<polymorphic_amplicon>ATGCTTGTTTGTAAATGATTTTTCAGAAATGACATTTCCCACGTGAGCCTTTACTTCTCGCGTGTGGCCTATGAGAGAATAGAACAGCAAAAACAATTACAAACGGCCGATTTGTTATCCAACATTGCAGGAAGTATGGGACTATTCCTCGGAATGAGTACTGTGAGAAATAMAAAATTTCTGATATCCTAAACAATTTTTGTATCAGGTCACCCTTCTCGAGATCTTCATTTATCTTTTCAAATCCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18843</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>55844</contig_pos>
        <strand>+</strand>
        <context>CTTGCAAAAG[C/T]TGCATACAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGATGAAAAAAAAATTCAGAACCATACGTCAAACGTAGACTTGCAAAAG</left_flank>
        <right_flank>TGCATACAGGTCATGGGAGTAAAATATGATTATCAGAACAGAAGGGAGGG</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAGTACTAGTTCTCTTAAAATTAGGGATTTCTTCAGAAAACTAAGCTTTGCCAGTCAACAGTCCGATCCAGCGCAACCGGTGCATCTGTCTCGAAAAGTTTCGACGTCTTCGATTTTCAAGTCGCAACTTATCTGAAACCATGTCTACAAAACTGAACTTATCACGACAATTTTATTGATTTGACCAAATAAATAATTTTGAATTATATGAAAGAGGACGATGTGTGGCTCGAAAGAACAAGAGGATGATTTCCTATGGAAGAAAGCTCAAAGGTGGGGAAAATTGATATTGGACTGTTGACAAAATTAGAAGATGCTAAAAATTTGAACAGTGACAGTACGAGATTCTTCGAAAAATCGTTGGGGTAGGGGACAAGAAAGAGCTGCATGTGGGCTTTTTGTGGCGGAGGAACTGGGGGGTGAAAACAGTGGGAAAGAAATGGGATTGAGATGAAAAAAAAATTCAGAACCATACGTCAAACGTAGACTTGCAAAAGCTGCATACAGGTCATGGGAGTAAAATATGATTATCAGAACAGAAGGGAGGGAAGAAAGAGTGGTACAAAAGTAAGGATATATCCTGAAATTGGGTTGAACACCGATAAAAATACATAGAAGGATCGAGAAGTTAGTGGTTCAAAGATGAGTGAATTGGGCCAAAAACGTTTCACAGAAAAACGAAGAAGACACGAGAACAAAAATTTGAATACCAAGTATCTCAGAGACATGATTGGTACAAGATTTAGACGTACAAGTTCTCATTTACAGCTCCATGGAATCCAAGTATTTGACGAGGTCCTCCATTGTGTGCCGGGAGTACACTTTACACCCTTTCCATTCTTGGCAACTAAAACACCACGTAGTTTAAATAACTTAAATACATACGAATTCCTCACCTCTCCACACACTTGATACAGTATGGCTGCAAAGTGTTGATGGGCTCTCCGGTCCTCGGATCCTTGGACGTGTAGGTGGAGATGAGTGGGATGTAGTTGAAG</canonical>
            <polymorphic>GAGAGTACTAGTTCTCTTAAAATTAGGGATTTCTTCAGAAAACTAAGCTTTGCCAGTCAACAGTCCGATCCAGCGCAACCGGTGCATCTGTCTCGAAAAGTTTCGACGTCTTCGATTTTCAAGTCGCAACTTATCTGAAACCATGTCTACAAAACTGAACTTATCACGACAATTTTATTGATTTGACCAAATAAATAATTTTGAATTATATGAAAGAGGACGATGTGTGGCTCGAAAGAACAAGAGGATGATTTCCTATGGAAGAAAGCTCAAAGGTGGGGAAAATTGATATTGGACTGTTGACAAAATTAGAAGATGCTAAAAATTTGAACAGTGACAGTACGAGATTCTTCGAAAAATCGTTGGGGTAGGGGACAAGAAAGAGCTGCATGTGGGCTTTTTGTGGCGGAGGAACTGGGGGGTGAAAACAGTGGGAAAGAAATGGGATTGAGATGAAAAAAAAATTCAGAACCATACGTCAAACGTAGACTTGCAAAAGYTGCATACAGGTCATGGGAGTAAAATATGATTATCAGAACAGAAGGGAGGGAAGAAAGAGTGGTACAAAAGTAAGGATATATCCTGAAATTGGGTTGAACACCGATAAAAATACATAGAAGGATCGAGAAGTTAGTGGTTCAAAGATGAGTGAATTGGGCCAAAAACGTTTCACAGAAAAACGAAGAAGACACGAGAACAAAAATTTGAATACCAAGTATCTCAGAGACATGATTGGTACAAGATTTAGACGTACAAGTTCTCATTTACAGCTCCATGGAATCCAAGTATTTGACGAGGTCCTCCATTGTGTGCCGGGAGTACACTTTACACCCTTTCCATTCTTGGCAACTAAAACACCACGTAGTTTAAATAACTTAAATACATACGAATTCCTCACCTCTCCACACACTTGATACAGTATGGCTGCAAAGTGTTGATGGGCTCTCCGGTCCTCGGATCCTTGGACGTGTAGGTGGAGATGAGTGGGATGTAGTTGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>271 230 221 117 114 47</canonical_bands>
                <polymorphic_bands>385 230 221 117 47</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>425 388 114 73</canonical_bands>
                <polymorphic_bands>539 388 73</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>183 159 154 117 112 103 58 47 38 18 11</canonical_bands>
                <polymorphic_bands>262 183 154 117 112 58 47 38 18 11</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>425 385 114 76</canonical_bands>
                <polymorphic_bands>539 385 76</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGTGACAGTACGAGATTCTTC</pcr_primer_p1>
		<pcr_primer_p2>CCTTACTTTTGTACCACTCTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACAGTGACAGTACGAGATTCTTCGAAAAATCGTTGGGGTAGGGGACAAGAAAGAGCTGCATGTGGGCTTTTTGTGGCGGAGGAACTGGGGGGTGAAAACAGTGGGAAAGAAATGGGATTGAGATGAAAAAAAAATTCAGAACCATACGTCAAACGTAGACTTGCAAAAGCTGCATACAGGTCATGGGAGTAAAATATGATTATCAGAACAGAAGGGAGGGAAGAAAGAGTGGTACAAAAGTAAGG</canonical_amplicon>
		<polymorphic_amplicon>ACAGTGACAGTACGAGATTCTTCGAAAAATCGTTGGGGTAGGGGACAAGAAAGAGCTGCATGTGGGCTTTTTGTGGCGGAGGAACTGGGGGGTGAAAACAGTGGGAAAGAAATGGGATTGAGATGAAAAAAAAATTCAGAACCATACGTCAAACGTAGACTTGCAAAAGYTGCATACAGGTCATGGGAGTAAAATATGATTATCAGAACAGAAGGGAGGGAAGAAAGAGTGGTACAAAAGTAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18844</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>55776</contig_pos>
        <strand>+</strand>
        <context>GTGAAAACAG[G/T]GGGAAAGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGAGCTGCATGTGGGCTTTTTGTGGCGGAGGAACTGGGGGGTGAAAACAG</left_flank>
        <right_flank>GGGAAAGAAATGGGATTGAGATGAAAAAAAAATTCAGAACCATACGTCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTCCACCTAAGCCTTTGATACGAAGGTGCAGTACATCTACAAATCCATCAATGCTTACAAGGTAAGGAGAGTACTAGTTCTCTTAAAATTAGGGATTTCTTCAGAAAACTAAGCTTTGCCAGTCAACAGTCCGATCCAGCGCAACCGGTGCATCTGTCTCGAAAAGTTTCGACGTCTTCGATTTTCAAGTCGCAACTTATCTGAAACCATGTCTACAAAACTGAACTTATCACGACAATTTTATTGATTTGACCAAATAAATAATTTTGAATTATATGAAAGAGGACGATGTGTGGCTCGAAAGAACAAGAGGATGATTTCCTATGGAAGAAAGCTCAAAGGTGGGGAAAATTGATATTGGACTGTTGACAAAATTAGAAGATGCTAAAAATTTGAACAGTGACAGTACGAGATTCTTCGAAAAATCGTTGGGGTAGGGGACAAGAAAGAGCTGCATGTGGGCTTTTTGTGGCGGAGGAACTGGGGGGTGAAAACAGTGGGAAAGAAATGGGATTGAGATGAAAAAAAAATTCAGAACCATACGTCAAACGTAGACTTGCAAAAGCTGCATACAGGTCATGGGAGTAAAATATGATTATCAGAACAGAAGGGAGGGAAGAAAGAGTGGTACAAAAGTAAGGATATATCCTGAAATTGGGTTGAACACCGATAAAAATACATAGAAGGATCGAGAAGTTAGTGGTTCAAAGATGAGTGAATTGGGCCAAAAACGTTTCACAGAAAAACGAAGAAGACACGAGAACAAAAATTTGAATACCAAGTATCTCAGAGACATGATTGGTACAAGATTTAGACGTACAAGTTCTCATTTACAGCTCCATGGAATCCAAGTATTTGACGAGGTCCTCCATTGTGTGCCGGGAGTACACTTTACACCCTTTCCATTCTTGGCAACTAAAACACCACGTAGTTTAAATAACTTAAATACATACGAATTCCTCACCTCTCCACACACTTGATACAGTATGGCTGCAAAG</canonical>
            <polymorphic>CATTCCACCTAAGCCTTTGATACGAAGGTGCAGTACATCTACAAATCCATCAATGCTTACAAGGTAAGGAGAGTACTAGTTCTCTTAAAATTAGGGATTTCTTCAGAAAACTAAGCTTTGCCAGTCAACAGTCCGATCCAGCGCAACCGGTGCATCTGTCTCGAAAAGTTTCGACGTCTTCGATTTTCAAGTCGCAACTTATCTGAAACCATGTCTACAAAACTGAACTTATCACGACAATTTTATTGATTTGACCAAATAAATAATTTTGAATTATATGAAAGAGGACGATGTGTGGCTCGAAAGAACAAGAGGATGATTTCCTATGGAAGAAAGCTCAAAGGTGGGGAAAATTGATATTGGACTGTTGACAAAATTAGAAGATGCTAAAAATTTGAACAGTGACAGTACGAGATTCTTCGAAAAATCGTTGGGGTAGGGGACAAGAAAGAGCTGCATGTGGGCTTTTTGTGGCGGAGGAACTGGGGGGTGAAAACAGKGGGAAAGAAATGGGATTGAGATGAAAAAAAAATTCAGAACCATACGTCAAACGTAGACTTGCAAAAGCTGCATACAGGTCATGGGAGTAAAATATGATTATCAGAACAGAAGGGAGGGAAGAAAGAGTGGTACAAAAGTAAGGATATATCCTGAAATTGGGTTGAACACCGATAAAAATACATAGAAGGATCGAGAAGTTAGTGGTTCAAAGATGAGTGAATTGGGCCAAAAACGTTTCACAGAAAAACGAAGAAGACACGAGAACAAAAATTTGAATACCAAGTATCTCAGAGACATGATTGGTACAAGATTTAGACGTACAAGTTCTCATTTACAGCTCCATGGAATCCAAGTATTTGACGAGGTCCTCCATTGTGTGCCGGGAGTACACTTTACACCCTTTCCATTCTTGGCAACTAAAACACCACGTAGTTTAAATAACTTAAATACATACGAATTCCTCACCTCTCCACACACTTGATACAGTATGGCTGCAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>488 236 130 91 35 14 6</canonical_bands>
                <polymorphic_bands>579 236 130 35 14 6</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>128 122 119 82 61 58 58 49 39 37 36 27 23 23 21 19 19 15 11 11 9 8 7 7 3 2 2 2 2</canonical_bands>
                <polymorphic_bands>137 122 119 82 61 58 58 49 39 37 36 27 23 23 21 19 19 15 11 11 8 7 7 3 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTGATATTGGACTGTTGA</pcr_primer_p1>
		<pcr_primer_p2>ATCATATTTTACTCCCATGACCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTGATATTGGACTGTTGACAAAATTAGAAGATGCTAAAAATTTGAACAGTGACAGTACGAGATTCTTCGAAAAATCGTTGGGGTAGGGGACAAGAAAGAGCTGCATGTGGGCTTTTTGTGGCGGAGGAACTGGGGGGTGAAAACAGTGGGAAAGAAATGGGATTGAGATGAAAAAAAAATTCAGAACCATACGTCAAACGTAGACTTGCAAAAGCTGCATACAGGTCATGGGAGTAAAATATGAT</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTGATATTGGACTGTTGACAAAATTAGAAGATGCTAAAAATTTGAACAGTGACAGTACGAGATTCTTCGAAAAATCGTTGGGGTAGGGGACAAGAAAGAGCTGCATGTGGGCTTTTTGTGGCGGAGGAACTGGGGGGTGAAAACAGKGGGAAAGAAATGGGATTGAGATGAAAAAAAAATTCAGAACCATACGTCAAACGTAGACTTGCAAAAGCTGCATACAGGTCATGGGAGTAAAATATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18845</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>55714</contig_pos>
        <strand>+</strand>
        <context>TCGTTGGGGT[A/G]GGGGACAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAAAATTTGAACAGTGACAGTACGAGATTCTTCGAAAAATCGTTGGGGT</left_flank>
        <right_flank>GGGGACAAGAAAGAGCTGCATGTGGGCTTTTTGTGGCGGAGGAACTGGGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTAAAGTGTCTACCATTGGTCTTCCTCAACCTCAAACTTATGATAGTGTCGAAAGCGGAACCATTCCACCTAAGCCTTTGATACGAAGGTGCAGTACATCTACAAATCCATCAATGCTTACAAGGTAAGGAGAGTACTAGTTCTCTTAAAATTAGGGATTTCTTCAGAAAACTAAGCTTTGCCAGTCAACAGTCCGATCCAGCGCAACCGGTGCATCTGTCTCGAAAAGTTTCGACGTCTTCGATTTTCAAGTCGCAACTTATCTGAAACCATGTCTACAAAACTGAACTTATCACGACAATTTTATTGATTTGACCAAATAAATAATTTTGAATTATATGAAAGAGGACGATGTGTGGCTCGAAAGAACAAGAGGATGATTTCCTATGGAAGAAAGCTCAAAGGTGGGGAAAATTGATATTGGACTGTTGACAAAATTAGAAGATGCTAAAAATTTGAACAGTGACAGTACGAGATTCTTCGAAAAATCGTTGGGGTAGGGGACAAGAAAGAGCTGCATGTGGGCTTTTTGTGGCGGAGGAACTGGGGGGTGAAAACAGTGGGAAAGAAATGGGATTGAGATGAAAAAAAAATTCAGAACCATACGTCAAACGTAGACTTGCAAAAGCTGCATACAGGTCATGGGAGTAAAATATGATTATCAGAACAGAAGGGAGGGAAGAAAGAGTGGTACAAAAGTAAGGATATATCCTGAAATTGGGTTGAACACCGATAAAAATACATAGAAGGATCGAGAAGTTAGTGGTTCAAAGATGAGTGAATTGGGCCAAAAACGTTTCACAGAAAAACGAAGAAGACACGAGAACAAAAATTTGAATACCAAGTATCTCAGAGACATGATTGGTACAAGATTTAGACGTACAAGTTCTCATTTACAGCTCCATGGAATCCAAGTATTTGACGAGGTCCTCCATTGTGTGCCGGGAGTACACTTTACACCCTTTCCATTCTTGGCAACTAAAACACCACGTAGTTTAA</canonical>
            <polymorphic>CGTAAAGTGTCTACCATTGGTCTTCCTCAACCTCAAACTTATGATAGTGTCGAAAGCGGAACCATTCCACCTAAGCCTTTGATACGAAGGTGCAGTACATCTACAAATCCATCAATGCTTACAAGGTAAGGAGAGTACTAGTTCTCTTAAAATTAGGGATTTCTTCAGAAAACTAAGCTTTGCCAGTCAACAGTCCGATCCAGCGCAACCGGTGCATCTGTCTCGAAAAGTTTCGACGTCTTCGATTTTCAAGTCGCAACTTATCTGAAACCATGTCTACAAAACTGAACTTATCACGACAATTTTATTGATTTGACCAAATAAATAATTTTGAATTATATGAAAGAGGACGATGTGTGGCTCGAAAGAACAAGAGGATGATTTCCTATGGAAGAAAGCTCAAAGGTGGGGAAAATTGATATTGGACTGTTGACAAAATTAGAAGATGCTAAAAATTTGAACAGTGACAGTACGAGATTCTTCGAAAAATCGTTGGGGTRGGGGACAAGAAAGAGCTGCATGTGGGCTTTTTGTGGCGGAGGAACTGGGGGGTGAAAACAGTGGGAAAGAAATGGGATTGAGATGAAAAAAAAATTCAGAACCATACGTCAAACGTAGACTTGCAAAAGCTGCATACAGGTCATGGGAGTAAAATATGATTATCAGAACAGAAGGGAGGGAAGAAAGAGTGGTACAAAAGTAAGGATATATCCTGAAATTGGGTTGAACACCGATAAAAATACATAGAAGGATCGAGAAGTTAGTGGTTCAAAGATGAGTGAATTGGGCCAAAAACGTTTCACAGAAAAACGAAGAAGACACGAGAACAAAAATTTGAATACCAAGTATCTCAGAGACATGATTGGTACAAGATTTAGACGTACAAGTTCTCATTTACAGCTCCATGGAATCCAAGTATTTGACGAGGTCCTCCATTGTGTGCCGGGAGTACACTTTACACCCTTTCCATTCTTGGCAACTAAAACACCACGTAGTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTGATATTGGACTGTTGA</pcr_primer_p1>
		<pcr_primer_p2>ATCATATTTTACTCCCATGACCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTGATATTGGACTGTTGACAAAATTAGAAGATGCTAAAAATTTGAACAGTGACAGTACGAGATTCTTCGAAAAATCGTTGGGGTAGGGGACAAGAAAGAGCTGCATGTGGGCTTTTTGTGGCGGAGGAACTGGGGGGTGAAAACAGTGGGAAAGAAATGGGATTGAGATGAAAAAAAAATTCAGAACCATACGTCAAACGTAGACTTGCAAAAGCTGCATACAGGTCATGGGAGTAAAATATGAT</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTGATATTGGACTGTTGACAAAATTAGAAGATGCTAAAAATTTGAACAGTGACAGTACGAGATTCTTCGAAAAATCGTTGGGGTRGGGGACAAGAAAGAGCTGCATGTGGGCTTTTTGTGGCGGAGGAACTGGGGGGTGAAAACAGTGGGAAAGAAATGGGATTGAGATGAAAAAAAAATTCAGAACCATACGTCAAACGTAGACTTGCAAAAGCTGCATACAGGTCATGGGAGTAAAATATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18846</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>55659</contig_pos>
        <strand>+</strand>
        <context>AAAATTAGAA[A/G]ATGCTAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGCTCAAAGGTGGGGAAAATTGATATTGGACTGTTGACAAAATTAGAA</left_flank>
        <right_flank>ATGCTAAAAATTTGAACAGTGACAGTACGAGATTCTTCGAAAAATCGTTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTGTAATTATACTAATAATTTCAGAAAATCCATTAGTTATGGTCAATTGGGTCGTAAAGTGTCTACCATTGGTCTTCCTCAACCTCAAACTTATGATAGTGTCGAAAGCGGAACCATTCCACCTAAGCCTTTGATACGAAGGTGCAGTACATCTACAAATCCATCAATGCTTACAAGGTAAGGAGAGTACTAGTTCTCTTAAAATTAGGGATTTCTTCAGAAAACTAAGCTTTGCCAGTCAACAGTCCGATCCAGCGCAACCGGTGCATCTGTCTCGAAAAGTTTCGACGTCTTCGATTTTCAAGTCGCAACTTATCTGAAACCATGTCTACAAAACTGAACTTATCACGACAATTTTATTGATTTGACCAAATAAATAATTTTGAATTATATGAAAGAGGACGATGTGTGGCTCGAAAGAACAAGAGGATGATTTCCTATGGAAGAAAGCTCAAAGGTGGGGAAAATTGATATTGGACTGTTGACAAAATTAGAAGATGCTAAAAATTTGAACAGTGACAGTACGAGATTCTTCGAAAAATCGTTGGGGTAGGGGACAAGAAAGAGCTGCATGTGGGCTTTTTGTGGCGGAGGAACTGGGGGGTGAAAACAGTGGGAAAGAAATGGGATTGAGATGAAAAAAAAATTCAGAACCATACGTCAAACGTAGACTTGCAAAAGCTGCATACAGGTCATGGGAGTAAAATATGATTATCAGAACAGAAGGGAGGGAAGAAAGAGTGGTACAAAAGTAAGGATATATCCTGAAATTGGGTTGAACACCGATAAAAATACATAGAAGGATCGAGAAGTTAGTGGTTCAAAGATGAGTGAATTGGGCCAAAAACGTTTCACAGAAAAACGAAGAAGACACGAGAACAAAAATTTGAATACCAAGTATCTCAGAGACATGATTGGTACAAGATTTAGACGTACAAGTTCTCATTTACAGCTCCATGGAATCCAAGTATTTGACGAGGTCCTCCATTGTGTGCCG</canonical>
            <polymorphic>TAATTGTAATTATACTAATAATTTCAGAAAATCCATTAGTTATGGTCAATTGGGTCGTAAAGTGTCTACCATTGGTCTTCCTCAACCTCAAACTTATGATAGTGTCGAAAGCGGAACCATTCCACCTAAGCCTTTGATACGAAGGTGCAGTACATCTACAAATCCATCAATGCTTACAAGGTAAGGAGAGTACTAGTTCTCTTAAAATTAGGGATTTCTTCAGAAAACTAAGCTTTGCCAGTCAACAGTCCGATCCAGCGCAACCGGTGCATCTGTCTCGAAAAGTTTCGACGTCTTCGATTTTCAAGTCGCAACTTATCTGAAACCATGTCTACAAAACTGAACTTATCACGACAATTTTATTGATTTGACCAAATAAATAATTTTGAATTATATGAAAGAGGACGATGTGTGGCTCGAAAGAACAAGAGGATGATTTCCTATGGAAGAAAGCTCAAAGGTGGGGAAAATTGATATTGGACTGTTGACAAAATTAGAARATGCTAAAAATTTGAACAGTGACAGTACGAGATTCTTCGAAAAATCGTTGGGGTAGGGGACAAGAAAGAGCTGCATGTGGGCTTTTTGTGGCGGAGGAACTGGGGGGTGAAAACAGTGGGAAAGAAATGGGATTGAGATGAAAAAAAAATTCAGAACCATACGTCAAACGTAGACTTGCAAAAGCTGCATACAGGTCATGGGAGTAAAATATGATTATCAGAACAGAAGGGAGGGAAGAAAGAGTGGTACAAAAGTAAGGATATATCCTGAAATTGGGTTGAACACCGATAAAAATACATAGAAGGATCGAGAAGTTAGTGGTTCAAAGATGAGTGAATTGGGCCAAAAACGTTTCACAGAAAAACGAAGAAGACACGAGAACAAAAATTTGAATACCAAGTATCTCAGAGACATGATTGGTACAAGATTTAGACGTACAAGTTCTCATTTACAGCTCCATGGAATCCAAGTATTTGACGAGGTCCTCCATTGTGTGCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATATGAAAGAGGACGATGTGT</pcr_primer_p1>
		<pcr_primer_p2>CATCTCAATCCCATTTCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTATATGAAAGAGGACGATGTGTGGCTCGAAAGAACAAGAGGATGATTTCCTATGGAAGAAAGCTCAAAGGTGGGGAAAATTGATATTGGACTGTTGACAAAATTAGAAGATGCTAAAAATTTGAACAGTGACAGTACGAGATTCTTCGAAAAATCGTTGGGGTAGGGGACAAGAAAGAGCTGCATGTGGGCTTTTTGTGGCGGAGGAACTGGGGGGTGAAAACAGTGGGAAAGAAATGGGATTGAGATG</canonical_amplicon>
		<polymorphic_amplicon>TTATATGAAAGAGGACGATGTGTGGCTCGAAAGAACAAGAGGATGATTTCCTATGGAAGAAAGCTCAAAGGTGGGGAAAATTGATATTGGACTGTTGACAAAATTAGAARATGCTAAAAATTTGAACAGTGACAGTACGAGATTCTTCGAAAAATCGTTGGGGTAGGGGACAAGAAAGAGCTGCATGTGGGCTTTTTGTGGCGGAGGAACTGGGGGGTGAAAACAGTGGGAAAGAAATGGGATTGAGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18847</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>55506</contig_pos>
        <strand>+</strand>
        <context>AAACTGAACT[C/T]ATCACGACAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGATTTTCAAGTCGCAACTTATCTGAAACCATGTCTACAAAACTGAACT</left_flank>
        <right_flank>ATCACGACAATTTTATTGATTTGACCAAATAAATAATTTTGAATTATATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAAATGTAAGTGTTTTATATTTCTAAAATTTTTTCAAAGTTGTCTTACACTTGACAGCCGAGCTCCAGACTCCGGAAAATGATCAAAAAAGCCAAAAAATCAATTTAAAAACACGTTTTTGTATATCTAATTGACCAGTGCTGTAAATAATTAATTGTAATTATACTAATAATTTCAGAAAATCCATTAGTTATGGTCAATTGGGTCGTAAAGTGTCTACCATTGGTCTTCCTCAACCTCAAACTTATGATAGTGTCGAAAGCGGAACCATTCCACCTAAGCCTTTGATACGAAGGTGCAGTACATCTACAAATCCATCAATGCTTACAAGGTAAGGAGAGTACTAGTTCTCTTAAAATTAGGGATTTCTTCAGAAAACTAAGCTTTGCCAGTCAACAGTCCGATCCAGCGCAACCGGTGCATCTGTCTCGAAAAGTTTCGACGTCTTCGATTTTCAAGTCGCAACTTATCTGAAACCATGTCTACAAAACTGAACTTATCACGACAATTTTATTGATTTGACCAAATAAATAATTTTGAATTATATGAAAGAGGACGATGTGTGGCTCGAAAGAACAAGAGGATGATTTCCTATGGAAGAAAGCTCAAAGGTGGGGAAAATTGATATTGGACTGTTGACAAAATTAGAAGATGCTAAAAATTTGAACAGTGACAGTACGAGATTCTTCGAAAAATCGTTGGGGTAGGGGACAAGAAAGAGCTGCATGTGGGCTTTTTGTGGCGGAGGAACTGGGGGGTGAAAACAGTGGGAAAGAAATGGGATTGAGATGAAAAAAAAATTCAGAACCATACGTCAAACGTAGACTTGCAAAAGCTGCATACAGGTCATGGGAGTAAAATATGATTATCAGAACAGAAGGGAGGGAAGAAAGAGTGGTACAAAAGTAAGGATATATCCTGAAATTGGGTTGAACACCGATAAAAATACATAGAAGGATCGAGAAGTTAGTGGTTCAAAGATGAGTGAATTGGGCCAA</canonical>
            <polymorphic>TCTAAATGTAAGTGTTTTATATTTCTAAAATTTTTTCAAAGTTGTCTTACACTTGACAGCCGAGCTCCAGACTCCGGAAAATGATCAAAAAAGCCAAAAAATCAATTTAAAAACACGTTTTTGTATATCTAATTGACCAGTGCTGTAAATAATTAATTGTAATTATACTAATAATTTCAGAAAATCCATTAGTTATGGTCAATTGGGTCGTAAAGTGTCTACCATTGGTCTTCCTCAACCTCAAACTTATGATAGTGTCGAAAGCGGAACCATTCCACCTAAGCCTTTGATACGAAGGTGCAGTACATCTACAAATCCATCAATGCTTACAAGGTAAGGAGAGTACTAGTTCTCTTAAAATTAGGGATTTCTTCAGAAAACTAAGCTTTGCCAGTCAACAGTCCGATCCAGCGCAACCGGTGCATCTGTCTCGAAAAGTTTCGACGTCTTCGATTTTCAAGTCGCAACTTATCTGAAACCATGTCTACAAAACTGAACTYATCACGACAATTTTATTGATTTGACCAAATAAATAATTTTGAATTATATGAAAGAGGACGATGTGTGGCTCGAAAGAACAAGAGGATGATTTCCTATGGAAGAAAGCTCAAAGGTGGGGAAAATTGATATTGGACTGTTGACAAAATTAGAAGATGCTAAAAATTTGAACAGTGACAGTACGAGATTCTTCGAAAAATCGTTGGGGTAGGGGACAAGAAAGAGCTGCATGTGGGCTTTTTGTGGCGGAGGAACTGGGGGGTGAAAACAGTGGGAAAGAAATGGGATTGAGATGAAAAAAAAATTCAGAACCATACGTCAAACGTAGACTTGCAAAAGCTGCATACAGGTCATGGGAGTAAAATATGATTATCAGAACAGAAGGGAGGGAAGAAAGAGTGGTACAAAAGTAAGGATATATCCTGAAATTGGGTTGAACACCGATAAAAATACATAGAAGGATCGAGAAGTTAGTGGTTCAAAGATGAGTGAATTGGGCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGCTTACAAGGTAAGGAGAGT</pcr_primer_p1>
		<pcr_primer_p2>CACATCGTCCTCTTTCATATAAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AATGCTTACAAGGTAAGGAGAGTACTAGTTCTCTTAAAATTAGGGATTTCTTCAGAAAACTAAGCTTTGCCAGTCAACAGTCCGATCCAGCGCAACCGGTGCATCTGTCTCGAAAAGTTTCGACGTCTTCGATTTTCAAGTCGCAACTTATCTGAAACCATGTCTACAAAACTGAACTTATCACGACAATTTTATTGATTTGACCAAATAAATAATTTTGAATTATATGAAAGAGGACGATGTG</canonical_amplicon>
		<polymorphic_amplicon>AATGCTTACAAGGTAAGGAGAGTACTAGTTCTCTTAAAATTAGGGATTTCTTCAGAAAACTAAGCTTTGCCAGTCAACAGTCCGATCCAGCGCAACCGGTGCATCTGTCTCGAAAAGTTTCGACGTCTTCGATTTTCAAGTCGCAACTTATCTGAAACCATGTCTACAAAACTGAACTYATCACGACAATTTTATTGATTTGACCAAATAAATAATTTTGAATTATATGAAAGAGGACGATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18848</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>55446</contig_pos>
        <strand>+</strand>
        <context>CTCGAAAAGT[C/T]TCGACGTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCAGTCAACAGTCCGATCCAGCGCAACCGGTGCATCTGTCTCGAAAAGT</left_flank>
        <right_flank>TCGACGTCTTCGATTTTCAAGTCGCAACTTATCTGAAACCATGTCTACAA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGCAAGTAGCTGTAAAACTAGTGAGTTTCAAAAAATTCTGTGAATACAAAGTTTTCAATCTAAATGTAAGTGTTTTATATTTCTAAAATTTTTTCAAAGTTGTCTTACACTTGACAGCCGAGCTCCAGACTCCGGAAAATGATCAAAAAAGCCAAAAAATCAATTTAAAAACACGTTTTTGTATATCTAATTGACCAGTGCTGTAAATAATTAATTGTAATTATACTAATAATTTCAGAAAATCCATTAGTTATGGTCAATTGGGTCGTAAAGTGTCTACCATTGGTCTTCCTCAACCTCAAACTTATGATAGTGTCGAAAGCGGAACCATTCCACCTAAGCCTTTGATACGAAGGTGCAGTACATCTACAAATCCATCAATGCTTACAAGGTAAGGAGAGTACTAGTTCTCTTAAAATTAGGGATTTCTTCAGAAAACTAAGCTTTGCCAGTCAACAGTCCGATCCAGCGCAACCGGTGCATCTGTCTCGAAAAGTTTCGACGTCTTCGATTTTCAAGTCGCAACTTATCTGAAACCATGTCTACAAAACTGAACTTATCACGACAATTTTATTGATTTGACCAAATAAATAATTTTGAATTATATGAAAGAGGACGATGTGTGGCTCGAAAGAACAAGAGGATGATTTCCTATGGAAGAAAGCTCAAAGGTGGGGAAAATTGATATTGGACTGTTGACAAAATTAGAAGATGCTAAAAATTTGAACAGTGACAGTACGAGATTCTTCGAAAAATCGTTGGGGTAGGGGACAAGAAAGAGCTGCATGTGGGCTTTTTGTGGCGGAGGAACTGGGGGGTGAAAACAGTGGGAAAGAAATGGGATTGAGATGAAAAAAAAATTCAGAACCATACGTCAAACGTAGACTTGCAAAAGCTGCATACAGGTCATGGGAGTAAAATATGATTATCAGAACAGAAGGGAGGGAAGAAAGAGTGGTACAAAAGTAAGGATATATCCTGAAATTGGGTTGAACACC</canonical>
            <polymorphic>ATGGCAAGTAGCTGTAAAACTAGTGAGTTTCAAAAAATTCTGTGAATACAAAGTTTTCAATCTAAATGTAAGTGTTTTATATTTCTAAAATTTTTTCAAAGTTGTCTTACACTTGACAGCCGAGCTCCAGACTCCGGAAAATGATCAAAAAAGCCAAAAAATCAATTTAAAAACACGTTTTTGTATATCTAATTGACCAGTGCTGTAAATAATTAATTGTAATTATACTAATAATTTCAGAAAATCCATTAGTTATGGTCAATTGGGTCGTAAAGTGTCTACCATTGGTCTTCCTCAACCTCAAACTTATGATAGTGTCGAAAGCGGAACCATTCCACCTAAGCCTTTGATACGAAGGTGCAGTACATCTACAAATCCATCAATGCTTACAAGGTAAGGAGAGTACTAGTTCTCTTAAAATTAGGGATTTCTTCAGAAAACTAAGCTTTGCCAGTCAACAGTCCGATCCAGCGCAACCGGTGCATCTGTCTCGAAAAGTYTCGACGTCTTCGATTTTCAAGTCGCAACTTATCTGAAACCATGTCTACAAAACTGAACTTATCACGACAATTTTATTGATTTGACCAAATAAATAATTTTGAATTATATGAAAGAGGACGATGTGTGGCTCGAAAGAACAAGAGGATGATTTCCTATGGAAGAAAGCTCAAAGGTGGGGAAAATTGATATTGGACTGTTGACAAAATTAGAAGATGCTAAAAATTTGAACAGTGACAGTACGAGATTCTTCGAAAAATCGTTGGGGTAGGGGACAAGAAAGAGCTGCATGTGGGCTTTTTGTGGCGGAGGAACTGGGGGGTGAAAACAGTGGGAAAGAAATGGGATTGAGATGAAAAAAAAATTCAGAACCATACGTCAAACGTAGACTTGCAAAAGCTGCATACAGGTCATGGGAGTAAAATATGATTATCAGAACAGAAGGGAGGGAAGAAAGAGTGGTACAAAAGTAAGGATATATCCTGAAATTGGGTTGAACACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGCTTACAAGGTAAGGAGAGT</pcr_primer_p1>
		<pcr_primer_p2>CACATCGTCCTCTTTCATATAAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AATGCTTACAAGGTAAGGAGAGTACTAGTTCTCTTAAAATTAGGGATTTCTTCAGAAAACTAAGCTTTGCCAGTCAACAGTCCGATCCAGCGCAACCGGTGCATCTGTCTCGAAAAGTTTCGACGTCTTCGATTTTCAAGTCGCAACTTATCTGAAACCATGTCTACAAAACTGAACTTATCACGACAATTTTATTGATTTGACCAAATAAATAATTTTGAATTATATGAAAGAGGACGATGTG</canonical_amplicon>
		<polymorphic_amplicon>AATGCTTACAAGGTAAGGAGAGTACTAGTTCTCTTAAAATTAGGGATTTCTTCAGAAAACTAAGCTTTGCCAGTCAACAGTCCGATCCAGCGCAACCGGTGCATCTGTCTCGAAAAGTYTCGACGTCTTCGATTTTCAAGTCGCAACTTATCTGAAACCATGTCTACAAAACTGAACTTATCACGACAATTTTATTGATTTGACCAAATAAATAATTTTGAATTATATGAAAGAGGACGATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18849</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>146516</contig_pos>
        <strand>+</strand>
        <context>CTATTTCCTA[A/C]TTCTATCGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCTCATTCATTTGCTATTTCTATTGCTACGTTTTACTCCCTATTTCCTA</left_flank>
        <right_flank>TTCTATCGCTACGTCCTGCAACTGAAAATGTCGTCTGAAACAACTGTTGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAAATTATTGATTTGATCACTGTGGTTTCGAAGGAAATGCAAATGTAGCAGGTTTGGAGCATAGCGGAGTTGTGTAAGAGTACTGTTTGAGTGTTCTTCACTGACGCCAATGACTTTTTGTATATTTGGGGGGTTGGTTTTGTTGGGACTGCTGGGATATTATTACTTGACTACAACAATCTCTCTCTTAATGTCCCCCATCGTACCTGTTACTATTACGTACCAGACTCACACCAAACCCAAATTACGGAATCTACATAATAATTATTGTATGGTGATCAAACGTGAAGAGAATAGGGGCCATAAACCTGTCAAAGTTGTTTATTATTTTTGAATTTCCTCTTCACATACTTTCCCAAGAGCCATATTTATTGTTTCCGCCCAATGTCCCGCCCATTGGCCCAGGTGAGCATCGACCGTACAGCTGTATAGTTTTTTCTACTCACCATCTCATTCATTTGCTATTTCTATTGCTACGTTTTACTCCCTATTTCCTAATTCTATCGCTACGTCCTGCAACTGAAAATGTCGTCTGAAACAACTGTTGCCCAACGTCTTTTTACCGACAAGGAAATTAAGGATCTTAACGGAAAAGTCCAATGTCTGCAGAGACTTGTCAACCACCCTGTGAGTGCTTTTCCACAATCTTAAAAATAATATTTCGATATTTTTCAGAGATGTAAGATCCCGGAGCTCAGGCTGACCTACACCAATCTTCTCACTTGCATGTCGAACCTAGACGCGGATTCCAGAAAACCATATACCGAGGTAGTTTTTGATGATTTTACAGACTACGAACTAGAAATTTCAGGATGGACGTCAAGATGTCGAGCTAGGTTTCAAAACAATGGCTATTCTTGAAGACACTCTGATTCGTGTTGTTTTGGGTGGAGAGACAGTGTCAAATGTGCTCATTCGTAATATGTCAATTCTTCAACAGACCGGTGATTCTTATTCCTCTCAATAATTTCGTGAATATTTTCAATTTTATTTTCTCA</canonical>
            <polymorphic>TAAAAATTATTGATTTGATCACTGTGGTTTCGAAGGAAATGCAAATGTAGCAGGTTTGGAGCATAGCGGAGTTGTGTAAGAGTACTGTTTGAGTGTTCTTCACTGACGCCAATGACTTTTTGTATATTTGGGGGGTTGGTTTTGTTGGGACTGCTGGGATATTATTACTTGACTACAACAATCTCTCTCTTAATGTCCCCCATCGTACCTGTTACTATTACGTACCAGACTCACACCAAACCCAAATTACGGAATCTACATAATAATTATTGTATGGTGATCAAACGTGAAGAGAATAGGGGCCATAAACCTGTCAAAGTTGTTTATTATTTTTGAATTTCCTCTTCACATACTTTCCCAAGAGCCATATTTATTGTTTCCGCCCAATGTCCCGCCCATTGGCCCAGGTGAGCATCGACCGTACAGCTGTATAGTTTTTTCTACTCACCATCTCATTCATTTGCTATTTCTATTGCTACGTTTTACTCCCTATTTCCTAMTTCTATCGCTACGTCCTGCAACTGAAAATGTCGTCTGAAACAACTGTTGCCCAACGTCTTTTTACCGACAAGGAAATTAAGGATCTTAACGGAAAAGTCCAATGTCTGCAGAGACTTGTCAACCACCCTGTGAGTGCTTTTCCACAATCTTAAAAATAATATTTCGATATTTTTCAGAGATGTAAGATCCCGGAGCTCAGGCTGACCTACACCAATCTTCTCACTTGCATGTCGAACCTAGACGCGGATTCCAGAAAACCATATACCGAGGTAGTTTTTGATGATTTTACAGACTACGAACTAGAAATTTCAGGATGGACGTCAAGATGTCGAGCTAGGTTTCAAAACAATGGCTATTCTTGAAGACACTCTGATTCGTGTTGTTTTGGGTGGAGAGACAGTGTCAAATGTGCTCATTCGTAATATGTCAATTCTTCAACAGACCGGTGATTCTTATTCCTCTCAATAATTTCGTGAATATTTTCAATTTTATTTTCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>240 231 163 124 76 71 38 20 18 15 4</canonical_bands>
                <polymorphic_bands>240 239 231 124 71 38 20 18 15 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACTCACCATCTCATTCATTTG</pcr_primer_p1>
		<pcr_primer_p2>GGGATCTTACATCTCTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACTCACCATCTCATTCATTTGCTATTTCTATTGCTACGTTTTACTCCCTATTTCCTAATTCTATCGCTACGTCCTGCAACTGAAAATGTCGTCTGAAACAACTGTTGCCCAACGTCTTTTTACCGACAAGGAAATTAAGGATCTTAACGGAAAAGTCCAATGTCTGCAGAGACTTGTCAACCACCCTGTGAGTGCTTTTCCACAATCTTAAAAATAATATTTCGATATTTTTCAGAGATGTAAGATCCC</canonical_amplicon>
		<polymorphic_amplicon>TACTCACCATCTCATTCATTTGCTATTTCTATTGCTACGTTTTACTCCCTATTTCCTAMTTCTATCGCTACGTCCTGCAACTGAAAATGTCGTCTGAAACAACTGTTGCCCAACGTCTTTTTACCGACAAGGAAATTAAGGATCTTAACGGAAAAGTCCAATGTCTGCAGAGACTTGTCAACCACCCTGTGAGTGCTTTTCCACAATCTTAAAAATAATATTTCGATATTTTTCAGAGATGTAAGATCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18850</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>146588</contig_pos>
        <strand>+</strand>
        <context>TTACCGACAA[A/G]GAAATTAAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGAAAATGTCGTCTGAAACAACTGTTGCCCAACGTCTTTTTACCGACAA</left_flank>
        <right_flank>GAAATTAAGGATCTTAACGGAAAAGTCCAATGTCTGCAGAGACTTGTCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGTAAGAGTACTGTTTGAGTGTTCTTCACTGACGCCAATGACTTTTTGTATATTTGGGGGGTTGGTTTTGTTGGGACTGCTGGGATATTATTACTTGACTACAACAATCTCTCTCTTAATGTCCCCCATCGTACCTGTTACTATTACGTACCAGACTCACACCAAACCCAAATTACGGAATCTACATAATAATTATTGTATGGTGATCAAACGTGAAGAGAATAGGGGCCATAAACCTGTCAAAGTTGTTTATTATTTTTGAATTTCCTCTTCACATACTTTCCCAAGAGCCATATTTATTGTTTCCGCCCAATGTCCCGCCCATTGGCCCAGGTGAGCATCGACCGTACAGCTGTATAGTTTTTTCTACTCACCATCTCATTCATTTGCTATTTCTATTGCTACGTTTTACTCCCTATTTCCTAATTCTATCGCTACGTCCTGCAACTGAAAATGTCGTCTGAAACAACTGTTGCCCAACGTCTTTTTACCGACAAGGAAATTAAGGATCTTAACGGAAAAGTCCAATGTCTGCAGAGACTTGTCAACCACCCTGTGAGTGCTTTTCCACAATCTTAAAAATAATATTTCGATATTTTTCAGAGATGTAAGATCCCGGAGCTCAGGCTGACCTACACCAATCTTCTCACTTGCATGTCGAACCTAGACGCGGATTCCAGAAAACCATATACCGAGGTAGTTTTTGATGATTTTACAGACTACGAACTAGAAATTTCAGGATGGACGTCAAGATGTCGAGCTAGGTTTCAAAACAATGGCTATTCTTGAAGACACTCTGATTCGTGTTGTTTTGGGTGGAGAGACAGTGTCAAATGTGCTCATTCGTAATATGTCAATTCTTCAACAGACCGGTGATTCTTATTCCTCTCAATAATTTCGTGAATATTTTCAATTTTATTTTCTCATTTATCAAGTCATTTTTAATGTAAAATAAAACAAATTGTACATTAGTTGTTTAGTATATATGACGAAAACTA</canonical>
            <polymorphic>TGTGTAAGAGTACTGTTTGAGTGTTCTTCACTGACGCCAATGACTTTTTGTATATTTGGGGGGTTGGTTTTGTTGGGACTGCTGGGATATTATTACTTGACTACAACAATCTCTCTCTTAATGTCCCCCATCGTACCTGTTACTATTACGTACCAGACTCACACCAAACCCAAATTACGGAATCTACATAATAATTATTGTATGGTGATCAAACGTGAAGAGAATAGGGGCCATAAACCTGTCAAAGTTGTTTATTATTTTTGAATTTCCTCTTCACATACTTTCCCAAGAGCCATATTTATTGTTTCCGCCCAATGTCCCGCCCATTGGCCCAGGTGAGCATCGACCGTACAGCTGTATAGTTTTTTCTACTCACCATCTCATTCATTTGCTATTTCTATTGCTACGTTTTACTCCCTATTTCCTAATTCTATCGCTACGTCCTGCAACTGAAAATGTCGTCTGAAACAACTGTTGCCCAACGTCTTTTTACCGACAARGAAATTAAGGATCTTAACGGAAAAGTCCAATGTCTGCAGAGACTTGTCAACCACCCTGTGAGTGCTTTTCCACAATCTTAAAAATAATATTTCGATATTTTTCAGAGATGTAAGATCCCGGAGCTCAGGCTGACCTACACCAATCTTCTCACTTGCATGTCGAACCTAGACGCGGATTCCAGAAAACCATATACCGAGGTAGTTTTTGATGATTTTACAGACTACGAACTAGAAATTTCAGGATGGACGTCAAGATGTCGAGCTAGGTTTCAAAACAATGGCTATTCTTGAAGACACTCTGATTCGTGTTGTTTTGGGTGGAGAGACAGTGTCAAATGTGCTCATTCGTAATATGTCAATTCTTCAACAGACCGGTGATTCTTATTCCTCTCAATAATTTCGTGAATATTTTCAATTTTATTTTCTCATTTATCAAGTCATTTTTAATGTAAAATAAAACAAATTGTACATTAGTTGTTTAGTATATATGACGAAAACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTCACCATCTCATTCATTTG</pcr_primer_p1>
		<pcr_primer_p2>GGGATCTTACATCTCTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACTCACCATCTCATTCATTTGCTATTTCTATTGCTACGTTTTACTCCCTATTTCCTAATTCTATCGCTACGTCCTGCAACTGAAAATGTCGTCTGAAACAACTGTTGCCCAACGTCTTTTTACCGACAAGGAAATTAAGGATCTTAACGGAAAAGTCCAATGTCTGCAGAGACTTGTCAACCACCCTGTGAGTGCTTTTCCACAATCTTAAAAATAATATTTCGATATTTTTCAGAGATGTAAGATCCC</canonical_amplicon>
		<polymorphic_amplicon>TACTCACCATCTCATTCATTTGCTATTTCTATTGCTACGTTTTACTCCCTATTTCCTAATTCTATCGCTACGTCCTGCAACTGAAAATGTCGTCTGAAACAACTGTTGCCCAACGTCTTTTTACCGACAARGAAATTAAGGATCTTAACGGAAAAGTCCAATGTCTGCAGAGACTTGTCAACCACCCTGTGAGTGCTTTTCCACAATCTTAAAAATAATATTTCGATATTTTTCAGAGATGTAAGATCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18860</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>148054</contig_pos>
        <strand></strand>
        <context>aaatawtatt[A/T]aaaaataatC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCCACCGAATCTGCAATGAAAAACTTGAGATGAATTTGAAAATAATATT</left_flank>
        <right_flank>AAAAATAATCGGAGTCAAATAAATCCACGAACTATTCGAGAACAAATAAC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGTTTCGAGCCAGAAACATTCATAGATACATCAACTCACAACGGAGATCGTGACACAAAATTCGGTTTCATATTTTCTTTTGGAATAGACCCAAAGCTCAATTTGTATGAAATTGCGGAAGGCTCTTCAAATGCGCTGAACCTGAAATTAAATGTGCCAAAACCCAAAAGCCGAATGATATATTTAAAACTCACGTATCCGCTCTCGGTATCAGTTCAGCACTAATTGTTCTTCCTGATCCGAGTGTTGATTGACTTTTATAACTGCTTTTAGCCTCTCCATTCAAATAACTGAATAATGAGCATTAGGAATTTCTCGTGATTCTCTTAAATTGTTCAACTTACGTCGAAGCCTCGTCACTAGCTGGGATCATAGGTTGAGAGCTGAAAATTTTTTCCGGGATCGAATCATAGCTCCACATGTTCAAGAGAGGTTTTTGTTTTATGAATCCACCGAATCTGCAATGAAAAACTTGAGATGAATTTGAAAATAATATTAAAAAATAATCGGAGTCAAATAAATCCACGAACTATTCGAGAACAAATAACTTACGTTAAAGATCGTGGAGGAGTGCCATACACATCTTCTGACCCAGATTGAAAGCTAGCCACGCTTACAAAATCATCAAGGTGTTCGCTTCCCTCGTCGCTGAAAAATTGCACGTCTTGTACATTCTCAGTACAGTGATTCTTTTTTCTTATCAAAGTGCTGCAAAATCTGTAATAGAAGAGTCCCCTAAAGTAAATTTGACCGATTTTTTTTCTCGGTGCCTGTCCATGATATAAAAAAGTGATCAACTGACAAATTACTTATCATGATGTCAGCAACGTTTTGCCAATTCAAACATGTTTGATATCTTGCACAGGGATTGAGATAATTGAGCTCAAGTTTGACAGATTAGGGACACTTCTGCTACTAGTCTCACGGTAAATTATTTCTGACGTACCTCAAAACCTGAGAACTGATCATGGTTTCCTTGTAGCTCGTTTGACTCAAAT</canonical>
            <polymorphic>ATTGTTTCGAGCCAGAAACATTCATAGATACATCAACTCACAACGGAGATCGTGACACAAAATTCGGTTTCATATTTTCTTTTGGAATAGACCCAAAGCTCAATTTGTATGAAATTGCGGAAGGCTCTTCAAATGCGCTGAACCTGAAATTAAATGTGCCAAAACCCAAAAGCCGAATGATATATTTAAAACTCACGTATCCGCTCTCGGTATCAGTTCAGCACTAATTGTTCTTCCTGATCCGAGTGTTGATTGACTTTTATAACTGCTTTTAGCCTCTCCATTCAAATAACTGAATAATGAGCATTAGGAATTTCTCGTGATTCTCTTAAATTGTTCAACTTACGTCGAAGCCTCGTCACTAGCTGGGATCATAGGTTGAGAGCTGAAAATTTTTTCCGGGATCGAATCATAGCTCCACATGTTCAAGAGAGGTTTTTGTTTTATGAATCCACCGAATCTGCAATGAAAAACTTGAGATGAATTTGAAAATAATATTWAAAAATAATCGGAGTCAAATAAATCCACGAACTATTCGAGAACAAATAACTTACGTTAAAGATCGTGGAGGAGTGCCATACACATCTTCTGACCCAGATTGAAAGCTAGCCACGCTTACAAAATCATCAAGGTGTTCGCTTCCCTCGTCGCTGAAAAATTGCACGTCTTGTACATTCTCAGTACAGTGATTCTTTTTTCTTATCAAAGTGCTGCAAAATCTGTAATAGAAGAGTCCCCTAAAGTAAATTTGACCGATTTTTTTTCTCGGTGCCTGTCCATGATATAAAAAAGTGATCAACTGACAAATTACTTATCATGATGTCAGCAACGTTTTGCCAATTCAAACATGTTTGATATCTTGCACAGGGATTGAGATAATTGAGCTCAAGTTTGACAGATTAGGGACACTTCTGCTACTAGTCTCACGGTAAATTATTTCTGACGTACCTCAAAACCTGAGAACTGATCATGGTTTCCTTGTAGCTCGTTTGACTCAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>444 169 150 143 58 36</canonical_bands>
                <polymorphic_bands>444 227 150 143 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTAGGAATTTCTCGTGATTCTC</pcr_primer_p1>
		<pcr_primer_p2>CGTAAGTTATTTGTTCTCGAATAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTAGGAATTTCTCGTGATTCTCTTAAATTGTTCAACTTACGTCGAAGCCTCGTCACTAGCTGGGATCATAGGTTGAGAGCTGAAAATTTTTTCCGGGATCGAATCATAGCTCCACATGTTCAAGAGAGGTTTTTGTTTTATGAATCCACCGAATCTGCAATGAAAAACTTGAGATGAATTTGAAAATAATATTAAAAAATAATCGGAGTCAAATAAATCCACGAACTATTCGAGAACAAATAACTTACG</canonical_amplicon>
		<polymorphic_amplicon>ATTAGGAATTTCTCGTGATTCTCTTAAATTGTTCAACTTACGTCGAAGCCTCGTCACTAGCTGGGATCATAGGTTGAGAGCTGAAAATTTTTTCCGGGATCGAATCATAGCTCCACATGTTCAAGAGAGGTTTTTGTTTTATGAATCCACCGAATCTGCAATGAAAAACTTGAGATGAATTTGAAAATAATATTWAAAAATAATCGGAGTCAAATAAATCCACGAACTATTCGAGAACAAATAACTTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18865</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>148049</contig_pos>
        <strand></strand>
        <context>TTTGaaaata[A/T]tattwaaaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATGAATCCACCGAATCTGCAATGAAAAACTTGAGATGAATTTGAAAATA</left_flank>
        <right_flank>TATTAAAAAATAATCGGAGTCAAATAAATCCACGAACTATTCGAGAACAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACAATTGTTTCGAGCCAGAAACATTCATAGATACATCAACTCACAACGGAGATCGTGACACAAAATTCGGTTTCATATTTTCTTTTGGAATAGACCCAAAGCTCAATTTGTATGAAATTGCGGAAGGCTCTTCAAATGCGCTGAACCTGAAATTAAATGTGCCAAAACCCAAAAGCCGAATGATATATTTAAAACTCACGTATCCGCTCTCGGTATCAGTTCAGCACTAATTGTTCTTCCTGATCCGAGTGTTGATTGACTTTTATAACTGCTTTTAGCCTCTCCATTCAAATAACTGAATAATGAGCATTAGGAATTTCTCGTGATTCTCTTAAATTGTTCAACTTACGTCGAAGCCTCGTCACTAGCTGGGATCATAGGTTGAGAGCTGAAAATTTTTTCCGGGATCGAATCATAGCTCCACATGTTCAAGAGAGGTTTTTGTTTTATGAATCCACCGAATCTGCAATGAAAAACTTGAGATGAATTTGAAAATAATATTAAAAAATAATCGGAGTCAAATAAATCCACGAACTATTCGAGAACAAATAACTTACGTTAAAGATCGTGGAGGAGTGCCATACACATCTTCTGACCCAGATTGAAAGCTAGCCACGCTTACAAAATCATCAAGGTGTTCGCTTCCCTCGTCGCTGAAAAATTGCACGTCTTGTACATTCTCAGTACAGTGATTCTTTTTTCTTATCAAAGTGCTGCAAAATCTGTAATAGAAGAGTCCCCTAAAGTAAATTTGACCGATTTTTTTTCTCGGTGCCTGTCCATGATATAAAAAAGTGATCAACTGACAAATTACTTATCATGATGTCAGCAACGTTTTGCCAATTCAAACATGTTTGATATCTTGCACAGGGATTGAGATAATTGAGCTCAAGTTTGACAGATTAGGGACACTTCTGCTACTAGTCTCACGGTAAATTATTTCTGACGTACCTCAAAACCTGAGAACTGATCATGGTTTCCTTGTAGCTCGTTTGACT</canonical>
            <polymorphic>AAACAATTGTTTCGAGCCAGAAACATTCATAGATACATCAACTCACAACGGAGATCGTGACACAAAATTCGGTTTCATATTTTCTTTTGGAATAGACCCAAAGCTCAATTTGTATGAAATTGCGGAAGGCTCTTCAAATGCGCTGAACCTGAAATTAAATGTGCCAAAACCCAAAAGCCGAATGATATATTTAAAACTCACGTATCCGCTCTCGGTATCAGTTCAGCACTAATTGTTCTTCCTGATCCGAGTGTTGATTGACTTTTATAACTGCTTTTAGCCTCTCCATTCAAATAACTGAATAATGAGCATTAGGAATTTCTCGTGATTCTCTTAAATTGTTCAACTTACGTCGAAGCCTCGTCACTAGCTGGGATCATAGGTTGAGAGCTGAAAATTTTTTCCGGGATCGAATCATAGCTCCACATGTTCAAGAGAGGTTTTTGTTTTATGAATCCACCGAATCTGCAATGAAAAACTTGAGATGAATTTGAAAATAWTATTAAAAAATAATCGGAGTCAAATAAATCCACGAACTATTCGAGAACAAATAACTTACGTTAAAGATCGTGGAGGAGTGCCATACACATCTTCTGACCCAGATTGAAAGCTAGCCACGCTTACAAAATCATCAAGGTGTTCGCTTCCCTCGTCGCTGAAAAATTGCACGTCTTGTACATTCTCAGTACAGTGATTCTTTTTTCTTATCAAAGTGCTGCAAAATCTGTAATAGAAGAGTCCCCTAAAGTAAATTTGACCGATTTTTTTTCTCGGTGCCTGTCCATGATATAAAAAAGTGATCAACTGACAAATTACTTATCATGATGTCAGCAACGTTTTGCCAATTCAAACATGTTTGATATCTTGCACAGGGATTGAGATAATTGAGCTCAAGTTTGACAGATTAGGGACACTTCTGCTACTAGTCTCACGGTAAATTATTTCTGACGTACCTCAAAACCTGAGAACTGATCATGGTTTCCTTGTAGCTCGTTTGACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTAGGAATTTCTCGTGATTCTC</pcr_primer_p1>
		<pcr_primer_p2>CGTAAGTTATTTGTTCTCGAATAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTAGGAATTTCTCGTGATTCTCTTAAATTGTTCAACTTACGTCGAAGCCTCGTCACTAGCTGGGATCATAGGTTGAGAGCTGAAAATTTTTTCCGGGATCGAATCATAGCTCCACATGTTCAAGAGAGGTTTTTGTTTTATGAATCCACCGAATCTGCAATGAAAAACTTGAGATGAATTTGAAAATAATATTAAAAAATAATCGGAGTCAAATAAATCCACGAACTATTCGAGAACAAATAACTTACG</canonical_amplicon>
		<polymorphic_amplicon>ATTAGGAATTTCTCGTGATTCTCTTAAATTGTTCAACTTACGTCGAAGCCTCGTCACTAGCTGGGATCATAGGTTGAGAGCTGAAAATTTTTTCCGGGATCGAATCATAGCTCCACATGTTCAAGAGAGGTTTTTGTTTTATGAATCCACCGAATCTGCAATGAAAAACTTGAGATGAATTTGAAAATAWTATTAAAAAATAATCGGAGTCAAATAAATCCACGAACTATTCGAGAACAAATAACTTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18872</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>147741</contig_pos>
        <strand>+</strand>
        <context>ATGATATATT[C/T]AAAACTCACG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTGAACCTGAAATTAAATGTGCCAAAACCCAAAAGCCGAATGATATATT</left_flank>
        <right_flank>AAAACTCACGTATCCGCTCTCGGTATCAGTTCAGCACTAATTGTTCTTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACGATTGCAAATTGCCAAACATGTCTCGTAAATATGACACATTATTTCCACAGTCACGCAGCATATGCAGTTGCTCCAGACGATTGGCACTTTTGGTCCTGGATCTTGCGGTTGTTGGTCCGATTCATCTCTGGATAGTAATTTTTCAAAAATCGAAATTTTTGTTTCAGTTGAAAAAGTTATAATACCTAGTTGACTCTGGCTGCGGTCCCTCTGTGATAACATCGTCCGAAACTGATAGCTGTTTTTGAATTCTCACACGACTCCTTCGATTGTGTGCGAACCTGAAAAGTATTCCTGAGCTAAAAACAATTGTTTCGAGCCAGAAACATTCATAGATACATCAACTCACAACGGAGATCGTGACACAAAATTCGGTTTCATATTTTCTTTTGGAATAGACCCAAAGCTCAATTTGTATGAAATTGCGGAAGGCTCTTCAAATGCGCTGAACCTGAAATTAAATGTGCCAAAACCCAAAAGCCGAATGATATATTTAAAACTCACGTATCCGCTCTCGGTATCAGTTCAGCACTAATTGTTCTTCCTGATCCGAGTGTTGATTGACTTTTATAACTGCTTTTAGCCTCTCCATTCAAATAACTGAATAATGAGCATTAGGAATTTCTCGTGATTCTCTTAAATTGTTCAACTTACGTCGAAGCCTCGTCACTAGCTGGGATCATAGGTTGAGAGCTGAAAATTTTTTCCGGGATCGAATCATAGCTCCACATGTTCAAGAGAGGTTTTTGTTTTATGAATCCACCGAATCTGCAATGAAAAACTTGAGATGAATTTGAAAATAATATTAAAAAATAATCGGAGTCAAATAAATCCACGAACTATTCGAGAACAAATAACTTACGTTAAAGATCGTGGAGGAGTGCCATACACATCTTCTGACCCAGATTGAAAGCTAGCCACGCTTACAAAATCATCAAGGTGTTCGCTTCCCTCGTCGCTGAAAAATTGCACGTCTTGTACATTCTCAGTACAGT</canonical>
            <polymorphic>CAACGATTGCAAATTGCCAAACATGTCTCGTAAATATGACACATTATTTCCACAGTCACGCAGCATATGCAGTTGCTCCAGACGATTGGCACTTTTGGTCCTGGATCTTGCGGTTGTTGGTCCGATTCATCTCTGGATAGTAATTTTTCAAAAATCGAAATTTTTGTTTCAGTTGAAAAAGTTATAATACCTAGTTGACTCTGGCTGCGGTCCCTCTGTGATAACATCGTCCGAAACTGATAGCTGTTTTTGAATTCTCACACGACTCCTTCGATTGTGTGCGAACCTGAAAAGTATTCCTGAGCTAAAAACAATTGTTTCGAGCCAGAAACATTCATAGATACATCAACTCACAACGGAGATCGTGACACAAAATTCGGTTTCATATTTTCTTTTGGAATAGACCCAAAGCTCAATTTGTATGAAATTGCGGAAGGCTCTTCAAATGCGCTGAACCTGAAATTAAATGTGCCAAAACCCAAAAGCCGAATGATATATTYAAAACTCACGTATCCGCTCTCGGTATCAGTTCAGCACTAATTGTTCTTCCTGATCCGAGTGTTGATTGACTTTTATAACTGCTTTTAGCCTCTCCATTCAAATAACTGAATAATGAGCATTAGGAATTTCTCGTGATTCTCTTAAATTGTTCAACTTACGTCGAAGCCTCGTCACTAGCTGGGATCATAGGTTGAGAGCTGAAAATTTTTTCCGGGATCGAATCATAGCTCCACATGTTCAAGAGAGGTTTTTGTTTTATGAATCCACCGAATCTGCAATGAAAAACTTGAGATGAATTTGAAAATAATATTAAAAAATAATCGGAGTCAAATAAATCCACGAACTATTCGAGAACAAATAACTTACGTTAAAGATCGTGGAGGAGTGCCATACACATCTTCTGACCCAGATTGAAAGCTAGCCACGCTTACAAAATCATCAAGGTGTTCGCTTCCCTCGTCGCTGAAAAATTGCACGTCTTGTACATTCTCAGTACAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>463 169 143 131 58 36</canonical_bands>
                <polymorphic_bands>463 179 169 131 58</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTCGGTTTCATATTTTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCCTAATGCTCATTATTCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AATTCGGTTTCATATTTTCTTTTGGAATAGACCCAAAGCTCAATTTGTATGAAATTGCGGAAGGCTCTTCAAATGCGCTGAACCTGAAATTAAATGTGCCAAAACCCAAAAGCCGAATGATATATTTAAAACTCACGTATCCGCTCTCGGTATCAGTTCAGCACTAATTGTTCTTCCTGATCCGAGTGTTGATTGACTTTTATAACTGCTTTTAGCCTCTCCATTCAAATAACTGAATAATGAGCATTAGGAA</canonical_amplicon>
		<polymorphic_amplicon>AATTCGGTTTCATATTTTCTTTTGGAATAGACCCAAAGCTCAATTTGTATGAAATTGCGGAAGGCTCTTCAAATGCGCTGAACCTGAAATTAAATGTGCCAAAACCCAAAAGCCGAATGATATATTYAAAACTCACGTATCCGCTCTCGGTATCAGTTCAGCACTAATTGTTCTTCCTGATCCGAGTGTTGATTGACTTTTATAACTGCTTTTAGCCTCTCCATTCAAATAACTGAATAATGAGCATTAGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18873</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>213286</contig_pos>
        <strand>+</strand>
        <context>TAGAGAACTT[C/T]ATTACAAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATATCTAATTCTTTAACGTACCGTAATCCAAAAAAGTCTAGAGAACTT</left_flank>
        <right_flank>ATTACAAATTTACCGTATTCACCCCAATAGAATGTCTTTCTGACAGTCAA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGTTACCCAATTTTTCTTTCTTATATTAGTTTGTATAGTTGTCACATTTTCGCGGTATACCGCGTGACCTTCATCTTTGCGCAGCGAGGTCCTTAGGTGTTTTGGTCCTTCCTCCCAAAGATTAGATATAGAGAAGAAGCGAGACAGATTGGTGTCTAGGATCTACTATTCAAGCAACCTTGAATTGTTTTGCGGGAGAAAGACATGTGCTTCGCAAAACTTTCTCTTTTTTAGCACTATGATCTTTGGTTGCTTAGAATTAGTTCTATTTAGGCCACGCCCACCAGAAACGGGTGTCGAAGGCTTCCACCTGCTAACTAGCTGCGTCGCAAGGACTCAAATAATATTTTAACTTTTGATATCTCATCCAAGTAACGAAACAGATTACGAAGTGAGTTTTTTCCACGGGAACGATTGTTTGAAATAATTCATTAATCTGCATAATAAAAATATCTAATTCTTTAACGTACCGTAATCCAAAAAAGTCTAGAGAACTTCATTACAAATTTACCGTATTCACCCCAATAGAATGTCTTTCTGACAGTCAACTTCAAGGTGTTCTATTTTTTTTTCTGTTCAAATACTTATGGTAATTCAAATATTCTTGAAGTTGGAATTATATGTATATTTGCTCTAATAGGAGGCCAGCCTGTGCTTGCACTTTGAGCCCACATATCTTGATTCCTGTAACAGATATAGAACAATCTTCAACTGATAATGTATTCATCGTAATATCATCAATAATTTATCAGTTGGCAGATTTTTGATATTTCTCATAGCAACAGAGATAATTGAGCTCAAATTGTCAGAATAGGATAGGCTCTAAACATTTCCCGTGAATATCTTTTCTATGCACATTCAAATATCATCAGCAGTGTCTCCACAGTTACTGCAAAAAGTACTAAACTATCTGAAACAAATGTTTTAGTTTTTTTTGATTCGTGTTCAATCTGTTCACCTTCTAGCTTCTCTAAACAACTGTGCGTGTCCTCAAAATG</canonical>
            <polymorphic>TGTGTTACCCAATTTTTCTTTCTTATATTAGTTTGTATAGTTGTCACATTTTCGCGGTATACCGCGTGACCTTCATCTTTGCGCAGCGAGGTCCTTAGGTGTTTTGGTCCTTCCTCCCAAAGATTAGATATAGAGAAGAAGCGAGACAGATTGGTGTCTAGGATCTACTATTCAAGCAACCTTGAATTGTTTTGCGGGAGAAAGACATGTGCTTCGCAAAACTTTCTCTTTTTTAGCACTATGATCTTTGGTTGCTTAGAATTAGTTCTATTTAGGCCACGCCCACCAGAAACGGGTGTCGAAGGCTTCCACCTGCTAACTAGCTGCGTCGCAAGGACTCAAATAATATTTTAACTTTTGATATCTCATCCAAGTAACGAAACAGATTACGAAGTGAGTTTTTTCCACGGGAACGATTGTTTGAAATAATTCATTAATCTGCATAATAAAAATATCTAATTCTTTAACGTACCGTAATCCAAAAAAGTCTAGAGAACTTYATTACAAATTTACCGTATTCACCCCAATAGAATGTCTTTCTGACAGTCAACTTCAAGGTGTTCTATTTTTTTTTCTGTTCAAATACTTATGGTAATTCAAATATTCTTGAAGTTGGAATTATATGTATATTTGCTCTAATAGGAGGCCAGCCTGTGCTTGCACTTTGAGCCCACATATCTTGATTCCTGTAACAGATATAGAACAATCTTCAACTGATAATGTATTCATCGTAATATCATCAATAATTTATCAGTTGGCAGATTTTTGATATTTCTCATAGCAACAGAGATAATTGAGCTCAAATTGTCAGAATAGGATAGGCTCTAAACATTTCCCGTGAATATCTTTTCTATGCACATTCAAATATCATCAGCAGTGTCTCCACAGTTACTGCAAAAAGTACTAAACTATCTGAAACAAATGTTTTAGTTTTTTTTGATTCGTGTTCAATCTGTTCACCTTCTAGCTTCTCTAAACAACTGTGCGTGTCCTCAAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCCAAGTAACGAAACAGATTA</pcr_primer_p1>
		<pcr_primer_p2>AACTTCAAGAATATTTGAATTACCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CATCCAAGTAACGAAACAGATTACGAAGTGAGTTTTTTCCACGGGAACGATTGTTTGAAATAATTCATTAATCTGCATAATAAAAATATCTAATTCTTTAACGTACCGTAATCCAAAAAAGTCTAGAGAACTTCATTACAAATTTACCGTATTCACCCCAATAGAATGTCTTTCTGACAGTCAACTTCAAGGTGTTCTATTTTTTTTTCTGTTCAAATACTTATGGTAATTCAAATATTCTTGAAGTT</canonical_amplicon>
		<polymorphic_amplicon>CATCCAAGTAACGAAACAGATTACGAAGTGAGTTTTTTCCACGGGAACGATTGTTTGAAATAATTCATTAATCTGCATAATAAAAATATCTAATTCTTTAACGTACCGTAATCCAAAAAAGTCTAGAGAACTTYATTACAAATTTACCGTATTCACCCCAATAGAATGTCTTTCTGACAGTCAACTTCAAGGTGTTCTATTTTTTTTTCTGTTCAAATACTTATGGTAATTCAAATATTCTTGAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18874</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>213401</contig_pos>
        <strand>+</strand>
        <context>TCTTGAAGTT[G/T]GAATTATATG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTTTTTTTCTGTTCAAATACTTATGGTAATTCAAATATTCTTGAAGTT</left_flank>
        <right_flank>GAATTATATGTATATTTGCTCTAATAGGAGGCCAGCCTGTGCTTGCACTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCAAAGATTAGATATAGAGAAGAAGCGAGACAGATTGGTGTCTAGGATCTACTATTCAAGCAACCTTGAATTGTTTTGCGGGAGAAAGACATGTGCTTCGCAAAACTTTCTCTTTTTTAGCACTATGATCTTTGGTTGCTTAGAATTAGTTCTATTTAGGCCACGCCCACCAGAAACGGGTGTCGAAGGCTTCCACCTGCTAACTAGCTGCGTCGCAAGGACTCAAATAATATTTTAACTTTTGATATCTCATCCAAGTAACGAAACAGATTACGAAGTGAGTTTTTTCCACGGGAACGATTGTTTGAAATAATTCATTAATCTGCATAATAAAAATATCTAATTCTTTAACGTACCGTAATCCAAAAAAGTCTAGAGAACTTCATTACAAATTTACCGTATTCACCCCAATAGAATGTCTTTCTGACAGTCAACTTCAAGGTGTTCTATTTTTTTTTCTGTTCAAATACTTATGGTAATTCAAATATTCTTGAAGTTGGAATTATATGTATATTTGCTCTAATAGGAGGCCAGCCTGTGCTTGCACTTTGAGCCCACATATCTTGATTCCTGTAACAGATATAGAACAATCTTCAACTGATAATGTATTCATCGTAATATCATCAATAATTTATCAGTTGGCAGATTTTTGATATTTCTCATAGCAACAGAGATAATTGAGCTCAAATTGTCAGAATAGGATAGGCTCTAAACATTTCCCGTGAATATCTTTTCTATGCACATTCAAATATCATCAGCAGTGTCTCCACAGTTACTGCAAAAAGTACTAAACTATCTGAAACAAATGTTTTAGTTTTTTTTGATTCGTGTTCAATCTGTTCACCTTCTAGCTTCTCTAAACAACTGTGCGTGTCCTCAAAATGACATTGACTTTTTTCCCGCTGCTTGTGCTCTGAGATGGAAAATTAATGTCTTTTTTCTTCGCAAGTGACAGCTGGAAACGATGCTTATCAGTGAACCATCAAGACATGCCACTAT</canonical>
            <polymorphic>CCCAAAGATTAGATATAGAGAAGAAGCGAGACAGATTGGTGTCTAGGATCTACTATTCAAGCAACCTTGAATTGTTTTGCGGGAGAAAGACATGTGCTTCGCAAAACTTTCTCTTTTTTAGCACTATGATCTTTGGTTGCTTAGAATTAGTTCTATTTAGGCCACGCCCACCAGAAACGGGTGTCGAAGGCTTCCACCTGCTAACTAGCTGCGTCGCAAGGACTCAAATAATATTTTAACTTTTGATATCTCATCCAAGTAACGAAACAGATTACGAAGTGAGTTTTTTCCACGGGAACGATTGTTTGAAATAATTCATTAATCTGCATAATAAAAATATCTAATTCTTTAACGTACCGTAATCCAAAAAAGTCTAGAGAACTTCATTACAAATTTACCGTATTCACCCCAATAGAATGTCTTTCTGACAGTCAACTTCAAGGTGTTCTATTTTTTTTTCTGTTCAAATACTTATGGTAATTCAAATATTCTTGAAGTTKGAATTATATGTATATTTGCTCTAATAGGAGGCCAGCCTGTGCTTGCACTTTGAGCCCACATATCTTGATTCCTGTAACAGATATAGAACAATCTTCAACTGATAATGTATTCATCGTAATATCATCAATAATTTATCAGTTGGCAGATTTTTGATATTTCTCATAGCAACAGAGATAATTGAGCTCAAATTGTCAGAATAGGATAGGCTCTAAACATTTCCCGTGAATATCTTTTCTATGCACATTCAAATATCATCAGCAGTGTCTCCACAGTTACTGCAAAAAGTACTAAACTATCTGAAACAAATGTTTTAGTTTTTTTTGATTCGTGTTCAATCTGTTCACCTTCTAGCTTCTCTAAACAACTGTGCGTGTCCTCAAAATGACATTGACTTTTTTCCCGCTGCTTGTGCTCTGAGATGGAAAATTAATGTCTTTTTTCTTCGCAAGTGACAGCTGGAAACGATGCTTATCAGTGAACCATCAAGACATGCCACTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACTTCAAGGTGTTCTATTTTT</pcr_primer_p1>
		<pcr_primer_p2>GGAAATGTTTAGAGCCTATCCTA</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>CAACTTCAAGGTGTTCTATTTTTTTTTCTGTTCAAATACTTATGGTAATTCAAATATTCTTGAAGTTGGAATTATATGTATATTTGCTCTAATAGGAGGCCAGCCTGTGCTTGCACTTTGAGCCCACATATCTTGATTCCTGTAACAGATATAGAACAATCTTCAACTGATAATGTATTCATCGTAATATCATCAATAATTTATCAGTTGGCAGATTTTTGATATTTCTCATAGCAACAGAGATAATTGAGCTCAAATTGTCAGAATAGGATAGGCTCTAAACATTTCC</canonical_amplicon>
		<polymorphic_amplicon>CAACTTCAAGGTGTTCTATTTTTTTTTCTGTTCAAATACTTATGGTAATTCAAATATTCTTGAAGTTKGAATTATATGTATATTTGCTCTAATAGGAGGCCAGCCTGTGCTTGCACTTTGAGCCCACATATCTTGATTCCTGTAACAGATATAGAACAATCTTCAACTGATAATGTATTCATCGTAATATCATCAATAATTTATCAGTTGGCAGATTTTTGATATTTCTCATAGCAACAGAGATAATTGAGCTCAAATTGTCAGAATAGGATAGGCTCTAAACATTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18875</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>226219</contig_pos>
        <strand>+</strand>
        <context>TGTTTCATGA[C/T]AACCATTATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAATTCGTACAGGGAAAATCAGAGCACGGCTTTTAAAAATGTTTCATGA</left_flank>
        <right_flank>AACCATTATTTTATGGAACAAAGGAAGCAAACAATTATCGAACTCCTTGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACTTCCAAATTGAAAAAATCCTGCTTTCACTGAAATACTATTGATATGCTCTTGTATTTCCAAGAAAAGCACCATCATTTTAATGAAGAATTGTGTTACTCAAAGTATTCATTAATCGACAAGAGTTTGTTAAGAAAAAACATTAAAAATTAAAGCATATTTGATATTAGATTAGTTTGACAAACATGACACAGGAATGTAGTAGAAAAGCTCAAGAAAATGGCTTTAACAGCGTTAGAGAGATCAATTAGTGCGATTAGTTATTTAATAGGAGTGATTAGCTATTCAATAAGAGTGATTAGGTATTTAGTAAAACATATCGATAATTTAATGAGAGAGATTAGTTATTTAATGAGAGACTGAAGAACCGGCAGTCGTTGGAGGCTCGAATTTTGGGACGAATTGCTGGTAATCTGGCATCTGAAACAACATAATTGAAAACAAGGTCAAATTCGTACAGGGAAAATCAGAGCACGGCTTTTAAAAATGTTTCATGATAACCATTATTTTATGGAACAAAGGAAGCAAACAATTATCGAACTCCTTGCCGAAACAGGCCGATCCGGGAAGTATGGGGAAATTTATGTTTCAATTTTCAAAAACTTACATTCGGTGGAACAAGCATGAATGGTGGTGCCATTGAATATCCTTGCATCATGTATGGATTCGGAATACATGGCATTGGTTGTGGAGCACATCTTTGGGCGTTTCTCTCATTTTCTGATTTTTCTTTCGACAACATCTTCTTGTAGCGGATTCTCTTATTTCCGAACCAATTGCTGACCTGAAACATACAAAGTATTGCGAAAACATTACAACCCTCCTCCGGATAATCTTCCACTCTGTTTCCTAGGAATACGCATTACTAACCTGTCCTACACTAATATTACACTGGCGAGCCAGCTCTTCTTTTTCTTGCTCCGTTGGGTATGGATGAGTGATGTGGGCTTGGAAGTAGTTGTTGAGAATCTCCGTTGACTGTCGTGAGAAGTTCTTTC</canonical>
            <polymorphic>CGACTTCCAAATTGAAAAAATCCTGCTTTCACTGAAATACTATTGATATGCTCTTGTATTTCCAAGAAAAGCACCATCATTTTAATGAAGAATTGTGTTACTCAAAGTATTCATTAATCGACAAGAGTTTGTTAAGAAAAAACATTAAAAATTAAAGCATATTTGATATTAGATTAGTTTGACAAACATGACACAGGAATGTAGTAGAAAAGCTCAAGAAAATGGCTTTAACAGCGTTAGAGAGATCAATTAGTGCGATTAGTTATTTAATAGGAGTGATTAGCTATTCAATAAGAGTGATTAGGTATTTAGTAAAACATATCGATAATTTAATGAGAGAGATTAGTTATTTAATGAGAGACTGAAGAACCGGCAGTCGTTGGAGGCTCGAATTTTGGGACGAATTGCTGGTAATCTGGCATCTGAAACAACATAATTGAAAACAAGGTCAAATTCGTACAGGGAAAATCAGAGCACGGCTTTTAAAAATGTTTCATGAYAACCATTATTTTATGGAACAAAGGAAGCAAACAATTATCGAACTCCTTGCCGAAACAGGCCGATCCGGGAAGTATGGGGAAATTTATGTTTCAATTTTCAAAAACTTACATTCGGTGGAACAAGCATGAATGGTGGTGCCATTGAATATCCTTGCATCATGTATGGATTCGGAATACATGGCATTGGTTGTGGAGCACATCTTTGGGCGTTTCTCTCATTTTCTGATTTTTCTTTCGACAACATCTTCTTGTAGCGGATTCTCTTATTTCCGAACCAATTGCTGACCTGAAACATACAAAGTATTGCGAAAACATTACAACCCTCCTCCGGATAATCTTCCACTCTGTTTCCTAGGAATACGCATTACTAACCTGTCCTACACTAATATTACACTGGCGAGCCAGCTCTTCTTTTTCTTGCTCCGTTGGGTATGGATGAGTGATGTGGGCTTGGAAGTAGTTGTTGAGAATCTCCGTTGACTGTCGTGAGAAGTTCTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAACATAATTGAAAACAAGGTC</pcr_primer_p1>
		<pcr_primer_p2>GTATTCCGAATCCATACATGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACAACATAATTGAAAACAAGGTCAAATTCGTACAGGGAAAATCAGAGCACGGCTTTTAAAAATGTTTCATGATAACCATTATTTTATGGAACAAAGGAAGCAAACAATTATCGAACTCCTTGCCGAAACAGGCCGATCCGGGAAGTATGGGGAAATTTATGTTTCAATTTTCAAAAACTTACATTCGGTGGAACAAGCATGAATGGTGGTGCCATTGAATATCCTTGCATCATGTATGGATTCGGAATAC</canonical_amplicon>
		<polymorphic_amplicon>ACAACATAATTGAAAACAAGGTCAAATTCGTACAGGGAAAATCAGAGCACGGCTTTTAAAAATGTTTCATGAYAACCATTATTTTATGGAACAAAGGAAGCAAACAATTATCGAACTCCTTGCCGAAACAGGCCGATCCGGGAAGTATGGGGAAATTTATGTTTCAATTTTCAAAAACTTACATTCGGTGGAACAAGCATGAATGGTGGTGCCATTGAATATCCTTGCATCATGTATGGATTCGGAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18876</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>226297</contig_pos>
        <strand>+</strand>
        <context>GGAAGTATGG[G/T]GAAATTTATG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAAACAATTATCGAACTCCTTGCCGAAACAGGCCGATCCGGGAAGTATGG</left_flank>
        <right_flank>GAAATTTATGTTTCAATTTTCAAAAACTTACATTCGGTGGAACAAGCATG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTAATGAAGAATTGTGTTACTCAAAGTATTCATTAATCGACAAGAGTTTGTTAAGAAAAAACATTAAAAATTAAAGCATATTTGATATTAGATTAGTTTGACAAACATGACACAGGAATGTAGTAGAAAAGCTCAAGAAAATGGCTTTAACAGCGTTAGAGAGATCAATTAGTGCGATTAGTTATTTAATAGGAGTGATTAGCTATTCAATAAGAGTGATTAGGTATTTAGTAAAACATATCGATAATTTAATGAGAGAGATTAGTTATTTAATGAGAGACTGAAGAACCGGCAGTCGTTGGAGGCTCGAATTTTGGGACGAATTGCTGGTAATCTGGCATCTGAAACAACATAATTGAAAACAAGGTCAAATTCGTACAGGGAAAATCAGAGCACGGCTTTTAAAAATGTTTCATGATAACCATTATTTTATGGAACAAAGGAAGCAAACAATTATCGAACTCCTTGCCGAAACAGGCCGATCCGGGAAGTATGGGGAAATTTATGTTTCAATTTTCAAAAACTTACATTCGGTGGAACAAGCATGAATGGTGGTGCCATTGAATATCCTTGCATCATGTATGGATTCGGAATACATGGCATTGGTTGTGGAGCACATCTTTGGGCGTTTCTCTCATTTTCTGATTTTTCTTTCGACAACATCTTCTTGTAGCGGATTCTCTTATTTCCGAACCAATTGCTGACCTGAAACATACAAAGTATTGCGAAAACATTACAACCCTCCTCCGGATAATCTTCCACTCTGTTTCCTAGGAATACGCATTACTAACCTGTCCTACACTAATATTACACTGGCGAGCCAGCTCTTCTTTTTCTTGCTCCGTTGGGTATGGATGAGTGATGTGGGCTTGGAAGTAGTTGTTGAGAATCTCCGTTGACTGTCGTGAGAAGTTCTTTCTGGTTCGCCGAGCATCCATGTAGACTCTCTTCAAGTGAGTGACGTTTTCGCATGAACGCTGTTTTGCACATTCGATGA</canonical>
            <polymorphic>ATTTTAATGAAGAATTGTGTTACTCAAAGTATTCATTAATCGACAAGAGTTTGTTAAGAAAAAACATTAAAAATTAAAGCATATTTGATATTAGATTAGTTTGACAAACATGACACAGGAATGTAGTAGAAAAGCTCAAGAAAATGGCTTTAACAGCGTTAGAGAGATCAATTAGTGCGATTAGTTATTTAATAGGAGTGATTAGCTATTCAATAAGAGTGATTAGGTATTTAGTAAAACATATCGATAATTTAATGAGAGAGATTAGTTATTTAATGAGAGACTGAAGAACCGGCAGTCGTTGGAGGCTCGAATTTTGGGACGAATTGCTGGTAATCTGGCATCTGAAACAACATAATTGAAAACAAGGTCAAATTCGTACAGGGAAAATCAGAGCACGGCTTTTAAAAATGTTTCATGATAACCATTATTTTATGGAACAAAGGAAGCAAACAATTATCGAACTCCTTGCCGAAACAGGCCGATCCGGGAAGTATGGKGAAATTTATGTTTCAATTTTCAAAAACTTACATTCGGTGGAACAAGCATGAATGGTGGTGCCATTGAATATCCTTGCATCATGTATGGATTCGGAATACATGGCATTGGTTGTGGAGCACATCTTTGGGCGTTTCTCTCATTTTCTGATTTTTCTTTCGACAACATCTTCTTGTAGCGGATTCTCTTATTTCCGAACCAATTGCTGACCTGAAACATACAAAGTATTGCGAAAACATTACAACCCTCCTCCGGATAATCTTCCACTCTGTTTCCTAGGAATACGCATTACTAACCTGTCCTACACTAATATTACACTGGCGAGCCAGCTCTTCTTTTTCTTGCTCCGTTGGGTATGGATGAGTGATGTGGGCTTGGAAGTAGTTGTTGAGAATCTCCGTTGACTGTCGTGAGAAGTTCTTTCTGGTTCGCCGAGCATCCATGTAGACTCTCTTCAAGTGAGTGACGTTTTCGCATGAACGCTGTTTTGCACATTCGATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAAGGAAGCAAACAATTATC</pcr_primer_p1>
		<pcr_primer_p2>ATAAGAGAATCCGCTACAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACAAAGGAAGCAAACAATTATCGAACTCCTTGCCGAAACAGGCCGATCCGGGAAGTATGGGGAAATTTATGTTTCAATTTTCAAAAACTTACATTCGGTGGAACAAGCATGAATGGTGGTGCCATTGAATATCCTTGCATCATGTATGGATTCGGAATACATGGCATTGGTTGTGGAGCACATCTTTGGGCGTTTCTCTCATTTTCTGATTTTTCTTTCGACAACATCTTCTTGTAGCGGATTCTCTTAT</canonical_amplicon>
		<polymorphic_amplicon>ACAAAGGAAGCAAACAATTATCGAACTCCTTGCCGAAACAGGCCGATCCGGGAAGTATGGKGAAATTTATGTTTCAATTTTCAAAAACTTACATTCGGTGGAACAAGCATGAATGGTGGTGCCATTGAATATCCTTGCATCATGTATGGATTCGGAATACATGGCATTGGTTGTGGAGCACATCTTTGGGCGTTTCTCTCATTTTCTGATTTTTCTTTCGACAACATCTTCTTGTAGCGGATTCTCTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18877</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>238859</contig_pos>
        <strand></strand>
        <context>TCAATAAAAT[T/A]TTTTTTGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTACAAACATCAAGTTAACCGCTAATCTCTTTTTACAATCTCAATAAAAT</left_flank>
        <right_flank>TTTTTTGAAAGATCTTTGTTAAATTAGCCAAAATTCCCATAGCTACATCA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTCCGGGCCGACCCGGTGACCCGGCCCGGCGGGTCGGGCCAGGCCGGGTTAGAAAACATTGTTCCGGCCCGGTCCGCCCGGGTAGCTGATTTTTCGAAAAATTTTGAATTCCACCTTAAAAACAACTTCCTGGTAAAATGCGCCCTTATAAAAGTATCGAAACTTCAAAATTCATAGCAATTTTGATTAAAACTTCACAAATTTTCAAAATACTTCGAAATTTTGAAATTTTGGAATCTGACCCGGGCCGACAGATCCGGGCCGGGTCATGGCCAGGCCGGCCCGGAGAATTTTTCATTTTGACCCGGCCCGGCCCGGCCCGTGACAAGTATGCTGAAAATGGTCAAAATAACCGGAAATCAACAGAAAAACAGGTTGTTATCTATCTAATTGACCGGTACTGTATATCAAATTTTGTAACAAAAAGTCATGAAATTGCGGTCTGTTTACAAACATCAAGTTAACCGCTAATCTCTTTTTACAATCTCAATAAAATTTTTTTTGAAAGATCTTTGTTAAATTAGCCAAAATTCCCATAGCTACATCATCTTGTTTTCCAAGTCCTAGTTCAAAAAGTCGGTTTTTGCTTTTTTTTTTCGTAAGATTATGAACCTGATTGTCACCTATTTGTCCATTTCTGACAACTCTCAAGAGGATAATGACTTCTTAAACTTTTGTTTTTCATATTCGTTTAGACGAGGCGCCAAGAAATCAAACCACACTTAATTATATAGATACCATATTTTAACCTAAAATTTTTGAGCTCAAAACACCTCCTTGTTTATCACTCTCTCACTACTTCTGCCAACGACGATCATGCATCGAGAGATTCTGTCTATACTGTTTCCAACTCTTTTCTGTATCGTTCTTCCAAGTCAAGTATTGCTTATGTACATGATCCAATATTATTCTCCCAAGTTCCTTAATAATTTGAAGTCAATTTTACGATGTAACTGTCTTTTGCAGTTTATAACTCTTTTAATAGCTTGCTCACTTC</canonical>
            <polymorphic>GAATTCCGGGCCGACCCGGTGACCCGGCCCGGCGGGTCGGGCCAGGCCGGGTTAGAAAACATTGTTCCGGCCCGGTCCGCCCGGGTAGCTGATTTTTCGAAAAATTTTGAATTCCACCTTAAAAACAACTTCCTGGTAAAATGCGCCCTTATAAAAGTATCGAAACTTCAAAATTCATAGCAATTTTGATTAAAACTTCACAAATTTTCAAAATACTTCGAAATTTTGAAATTTTGGAATCTGACCCGGGCCGACAGATCCGGGCCGGGTCATGGCCAGGCCGGCCCGGAGAATTTTTCATTTTGACCCGGCCCGGCCCGGCCCGTGACAAGTATGCTGAAAATGGTCAAAATAACCGGAAATCAACAGAAAAACAGGTTGTTATCTATCTAATTGACCGGTACTGTATATCAAATTTTGTAACAAAAAGTCATGAAATTGCGGTCTGTTTACAAACATCAAGTTAACCGCTAATCTCTTTTTACAATCTCAATAAAATWTTTTTTGAAAGATCTTTGTTAAATTAGCCAAAATTCCCATAGCTACATCATCTTGTTTTCCAAGTCCTAGTTCAAAAAGTCGGTTTTTGCTTTTTTTTTTCGTAAGATTATGAACCTGATTGTCACCTATTTGTCCATTTCTGACAACTCTCAAGAGGATAATGACTTCTTAAACTTTTGTTTTTCATATTCGTTTAGACGAGGCGCCAAGAAATCAAACCACACTTAATTATATAGATACCATATTTTAACCTAAAATTTTTGAGCTCAAAACACCTCCTTGTTTATCACTCTCTCACTACTTCTGCCAACGACGATCATGCATCGAGAGATTCTGTCTATACTGTTTCCAACTCTTTTCTGTATCGTTCTTCCAAGTCAAGTATTGCTTATGTACATGATCCAATATTATTCTCCCAAGTTCCTTAATAATTTGAAGTCAATTTTACGATGTAACTGTCTTTTGCAGTTTATAACTCTTTTAATAGCTTGCTCACTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>244 225 122 101 83 62 62 35 31 19 8 7 1</canonical_bands>
                <polymorphic_bands>244 225 122 118 101 62 62 31 19 8 7 1</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>196 174 101 100 62 62 60 59 29 25 23 22 21 19 11 10 10 8 7 1</canonical_bands>
                <polymorphic_bands>196 174 101 100 85 62 62 59 29 23 22 21 19 11 10 10 8 7 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTCTGTTTACAAACATCAAGTTA</pcr_primer_p1>
		<pcr_primer_p2>ACGAATATGAAAAACAAAAGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGTCTGTTTACAAACATCAAGTTAACCGCTAATCTCTTTTTACAATCTCAATAAAATTTTTTTTGAAAGATCTTTGTTAAATTAGCCAAAATTCCCATAGCTACATCATCTTGTTTTCCAAGTCCTAGTTCAAAAAGTCGGTTTTTGCTTTTTTTTTTCGTAAGATTATGAACCTGATTGTCACCTATTTGTCCATTTCTGACAACTCTCAAGAGGATAATGACTTCTTAAACTTTTGTTTTTCATATTCGT</canonical_amplicon>
		<polymorphic_amplicon>GGTCTGTTTACAAACATCAAGTTAACCGCTAATCTCTTTTTACAATCTCAATAAAATWTTTTTTGAAAGATCTTTGTTAAATTAGCCAAAATTCCCATAGCTACATCATCTTGTTTTCCAAGTCCTAGTTCAAAAAGTCGGTTTTTGCTTTTTTTTTTCGTAAGATTATGAACCTGATTGTCACCTATTTGTCCATTTCTGACAACTCTCAAGAGGATAATGACTTCTTAAACTTTTGTTTTTCATATTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18947</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>242221</contig_pos>
        <strand></strand>
        <context>AGTCATTGAA[C/A]AAAAAAATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CAATCACTTGCTACCTTCCAATATTTCTTTTCCTTTTTGTAGTCATTGAA</left_flank>
        <right_flank>AAAAAAATTCCAGAAACCGAATCCCTCTTCGAGCAGTACTTCATTGTAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGTGACAGTAAGAACTTAATCAAAAGGTCTGCATAAAGTTTTTATAATGCTTAGTGTGCTGAATTTTTTCTTATAATAACCGAAACATTCTCAACTGAAGATATGGACAAATTACGGAAGATCAACTCAAATGTCACCGATCATTCTGTCATTGGCTACATCACTTTGAAAACTATTCCGAGTCAAGCAATATTTTTTTGTATAACAGTATCTGTTTTTTTTCTTCCACCCATCGGCTTGCTGATCAGAAGGTTTGTTTTTCAGTATTTCTCAAGTTGTTGTTGAGAAAAGTTTCAGAAAATTTATCAATATTGTAAGTGCAACTCTAGAAAGGACAACTTCTACTTATCGGAAACAACAAAATCAAAGTTTTATGAATGTAGACAATTGAAAAATAATGATTTCAAGTATTGTTTTTTTAGGGACTCACTATTCAGGTATTTCTTCCAATCACTTGCTACCTTCCAATATTTCTTTTCCTTTTTGTAGTCATTGAACAAAAAAATTCCAGAAACCGAATCCCTCTTCGAGCAGTACTTCATTGTAATTTTTACGATTTTTCCGTCTTTATTGGATTCCTATATAACTTTATACTCGGTCAAGTCATATCGGAAGCAGATTAAAAGCATATTCAAATTGGAGAAGGCTGAGCAAACAATTCAAGTGGCTGCTATTGCTTCTCAGATGTAAAACCTTTCTTTGACGTTTCTTTTCTTTGTAAAAGTTTAGTCGTGATTTATATTCTTCTTTTTGAATAACAGATTTTTCGTGGTTTGTAGCATCCGTTTTTATAAATGACACATAATTATTGCCTACCGTCATTGACGTCTGAACATTCAAAATCCCTAGACGTCAGCAAGATGTGATTTTGATTTTTAAAGTAGCTCATAATTTTCATAAAGTTGGTGTGTGATTCTTCCAACTTGAGTAGACAGGTGTCGGGTAGAAGCCACAAAGACAGAATGGATCAGAACAAGTCACTATCAAAAAATATATTT</canonical>
            <polymorphic>ATTGTGACAGTAAGAACTTAATCAAAAGGTCTGCATAAAGTTTTTATAATGCTTAGTGTGCTGAATTTTTTCTTATAATAACCGAAACATTCTCAACTGAAGATATGGACAAATTACGGAAGATCAACTCAAATGTCACCGATCATTCTGTCATTGGCTACATCACTTTGAAAACTATTCCGAGTCAAGCAATATTTTTTTGTATAACAGTATCTGTTTTTTTTCTTCCACCCATCGGCTTGCTGATCAGAAGGTTTGTTTTTCAGTATTTCTCAAGTTGTTGTTGAGAAAAGTTTCAGAAAATTTATCAATATTGTAAGTGCAACTCTAGAAAGGACAACTTCTACTTATCGGAAACAACAAAATCAAAGTTTTATGAATGTAGACAATTGAAAAATAATGATTTCAAGTATTGTTTTTTTAGGGACTCACTATTCAGGTATTTCTTCCAATCACTTGCTACCTTCCAATATTTCTTTTCCTTTTTGTAGTCATTGAAMAAAAAAATTCCAGAAACCGAATCCCTCTTCGAGCAGTACTTCATTGTAATTTTTACGATTTTTCCGTCTTTATTGGATTCCTATATAACTTTATACTCGGTCAAGTCATATCGGAAGCAGATTAAAAGCATATTCAAATTGGAGAAGGCTGAGCAAACAATTCAAGTGGCTGCTATTGCTTCTCAGATGTAAAACCTTTCTTTGACGTTTCTTTTCTTTGTAAAAGTTTAGTCGTGATTTATATTCTTCTTTTTGAATAACAGATTTTTCGTGGTTTGTAGCATCCGTTTTTATAAATGACACATAATTATTGCCTACCGTCATTGACGTCTGAACATTCAAAATCCCTAGACGTCAGCAAGATGTGATTTTGATTTTTAAAGTAGCTCATAATTTTCATAAAGTTGGTGTGTGATTCTTCCAACTTGAGTAGACAGGTGTCGGGTAGAAGCCACAAAGACAGAATGGATCAGAACAAGTCACTATCAAAAAATATATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGTGCAACTCTAGAAAGGACA</pcr_primer_p1>
		<pcr_primer_p2>CGGAAAAATCGTAAAAATTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAGTGCAACTCTAGAAAGGACAACTTCTACTTATCGGAAACAACAAAATCAAAGTTTTATGAATGTAGACAATTGAAAAATAATGATTTCAAGTATTGTTTTTTTAGGGACTCACTATTCAGGTATTTCTTCCAATCACTTGCTACCTTCCAATATTTCTTTTCCTTTTTGTAGTCATTGAACAAAAAAATTCCAGAAACCGAATCCCTCTTCGAGCAGTACTTCATTGTAATTTTTACGATTTTTCCG</canonical_amplicon>
		<polymorphic_amplicon>TAAGTGCAACTCTAGAAAGGACAACTTCTACTTATCGGAAACAACAAAATCAAAGTTTTATGAATGTAGACAATTGAAAAATAATGATTTCAAGTATTGTTTTTTTAGGGACTCACTATTCAGGTATTTCTTCCAATCACTTGCTACCTTCCAATATTTCTTTTCCTTTTTGTAGTCATTGAAMAAAAAAATTCCAGAAACCGAATCCCTCTTCGAGCAGTACTTCATTGTAATTTTTACGATTTTTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18948</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>242177</contig_pos>
        <strand></strand>
        <context>CTTCCAATCA[C/T]TTGCTACCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAAGTATTGTTTTTTTAGGGACTCACTATTCAGGTATTTCTTCCAATCA</left_flank>
        <right_flank>TTGCTACCTTCCAATATTTCTTTTCCTTTTTGTAGTCATTGAACAAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACAAGTATGCATTGTAATGTTTATTCTTCTCATTCCAATTGTAATTGTGACAGTAAGAACTTAATCAAAAGGTCTGCATAAAGTTTTTATAATGCTTAGTGTGCTGAATTTTTTCTTATAATAACCGAAACATTCTCAACTGAAGATATGGACAAATTACGGAAGATCAACTCAAATGTCACCGATCATTCTGTCATTGGCTACATCACTTTGAAAACTATTCCGAGTCAAGCAATATTTTTTTGTATAACAGTATCTGTTTTTTTTCTTCCACCCATCGGCTTGCTGATCAGAAGGTTTGTTTTTCAGTATTTCTCAAGTTGTTGTTGAGAAAAGTTTCAGAAAATTTATCAATATTGTAAGTGCAACTCTAGAAAGGACAACTTCTACTTATCGGAAACAACAAAATCAAAGTTTTATGAATGTAGACAATTGAAAAATAATGATTTCAAGTATTGTTTTTTTAGGGACTCACTATTCAGGTATTTCTTCCAATCACTTGCTACCTTCCAATATTTCTTTTCCTTTTTGTAGTCATTGAACAAAAAAATTCCAGAAACCGAATCCCTCTTCGAGCAGTACTTCATTGTAATTTTTACGATTTTTCCGTCTTTATTGGATTCCTATATAACTTTATACTCGGTCAAGTCATATCGGAAGCAGATTAAAAGCATATTCAAATTGGAGAAGGCTGAGCAAACAATTCAAGTGGCTGCTATTGCTTCTCAGATGTAAAACCTTTCTTTGACGTTTCTTTTCTTTGTAAAAGTTTAGTCGTGATTTATATTCTTCTTTTTGAATAACAGATTTTTCGTGGTTTGTAGCATCCGTTTTTATAAATGACACATAATTATTGCCTACCGTCATTGACGTCTGAACATTCAAAATCCCTAGACGTCAGCAAGATGTGATTTTGATTTTTAAAGTAGCTCATAATTTTCATAAAGTTGGTGTGTGATTCTTCCAACTTGAGTAGACAGGTGTCGGGTAGAAGCCACA</canonical>
            <polymorphic>TACAAGTATGCATTGTAATGTTTATTCTTCTCATTCCAATTGTAATTGTGACAGTAAGAACTTAATCAAAAGGTCTGCATAAAGTTTTTATAATGCTTAGTGTGCTGAATTTTTTCTTATAATAACCGAAACATTCTCAACTGAAGATATGGACAAATTACGGAAGATCAACTCAAATGTCACCGATCATTCTGTCATTGGCTACATCACTTTGAAAACTATTCCGAGTCAAGCAATATTTTTTTGTATAACAGTATCTGTTTTTTTTCTTCCACCCATCGGCTTGCTGATCAGAAGGTTTGTTTTTCAGTATTTCTCAAGTTGTTGTTGAGAAAAGTTTCAGAAAATTTATCAATATTGTAAGTGCAACTCTAGAAAGGACAACTTCTACTTATCGGAAACAACAAAATCAAAGTTTTATGAATGTAGACAATTGAAAAATAATGATTTCAAGTATTGTTTTTTTAGGGACTCACTATTCAGGTATTTCTTCCAATCAYTTGCTACCTTCCAATATTTCTTTTCCTTTTTGTAGTCATTGAACAAAAAAATTCCAGAAACCGAATCCCTCTTCGAGCAGTACTTCATTGTAATTTTTACGATTTTTCCGTCTTTATTGGATTCCTATATAACTTTATACTCGGTCAAGTCATATCGGAAGCAGATTAAAAGCATATTCAAATTGGAGAAGGCTGAGCAAACAATTCAAGTGGCTGCTATTGCTTCTCAGATGTAAAACCTTTCTTTGACGTTTCTTTTCTTTGTAAAAGTTTAGTCGTGATTTATATTCTTCTTTTTGAATAACAGATTTTTCGTGGTTTGTAGCATCCGTTTTTATAAATGACACATAATTATTGCCTACCGTCATTGACGTCTGAACATTCAAAATCCCTAGACGTCAGCAAGATGTGATTTTGATTTTTAAAGTAGCTCATAATTTTCATAAAGTTGGTGTGTGATTCTTCCAACTTGAGTAGACAGGTGTCGGGTAGAAGCCACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>213 109 92 78 68 65 65 52 50 43 37 29 27 26 24 14 2 2 2 2</canonical_bands>
                <polymorphic_bands>237 109 92 78 68 65 65 52 50 43 37 29 27 26 14 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAGTGCAACTCTAGAAAGGACA</pcr_primer_p1>
		<pcr_primer_p2>CGGAAAAATCGTAAAAATTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAGTGCAACTCTAGAAAGGACAACTTCTACTTATCGGAAACAACAAAATCAAAGTTTTATGAATGTAGACAATTGAAAAATAATGATTTCAAGTATTGTTTTTTTAGGGACTCACTATTCAGGTATTTCTTCCAATCACTTGCTACCTTCCAATATTTCTTTTCCTTTTTGTAGTCATTGAACAAAAAAATTCCAGAAACCGAATCCCTCTTCGAGCAGTACTTCATTGTAATTTTTACGATTTTTCCG</canonical_amplicon>
		<polymorphic_amplicon>TAAGTGCAACTCTAGAAAGGACAACTTCTACTTATCGGAAACAACAAAATCAAAGTTTTATGAATGTAGACAATTGAAAAATAATGATTTCAAGTATTGTTTTTTTAGGGACTCACTATTCAGGTATTTCTTCCAATCAYTTGCTACCTTCCAATATTTCTTTTCCTTTTTGTAGTCATTGAACAAAAAAATTCCAGAAACCGAATCCCTCTTCGAGCAGTACTTCATTGTAATTTTTACGATTTTTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18949</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>242143</contig_pos>
        <strand></strand>
        <context>ATTGTTTTTT[T/C]AGGGACTCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTATGAATGTAGACAATTGAAAAATAATGATTTCAAGTATTGTTTTTT</left_flank>
        <right_flank>AGGGACTCACTATTCAGGTATTTCTTCCAATCACTTGCTACCTTCCAATA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTTGGTTCGAAAATATAGGCAAAGGCCCGGATTACAAGTATGCATTGTAATGTTTATTCTTCTCATTCCAATTGTAATTGTGACAGTAAGAACTTAATCAAAAGGTCTGCATAAAGTTTTTATAATGCTTAGTGTGCTGAATTTTTTCTTATAATAACCGAAACATTCTCAACTGAAGATATGGACAAATTACGGAAGATCAACTCAAATGTCACCGATCATTCTGTCATTGGCTACATCACTTTGAAAACTATTCCGAGTCAAGCAATATTTTTTTGTATAACAGTATCTGTTTTTTTTCTTCCACCCATCGGCTTGCTGATCAGAAGGTTTGTTTTTCAGTATTTCTCAAGTTGTTGTTGAGAAAAGTTTCAGAAAATTTATCAATATTGTAAGTGCAACTCTAGAAAGGACAACTTCTACTTATCGGAAACAACAAAATCAAAGTTTTATGAATGTAGACAATTGAAAAATAATGATTTCAAGTATTGTTTTTTTAGGGACTCACTATTCAGGTATTTCTTCCAATCACTTGCTACCTTCCAATATTTCTTTTCCTTTTTGTAGTCATTGAACAAAAAAATTCCAGAAACCGAATCCCTCTTCGAGCAGTACTTCATTGTAATTTTTACGATTTTTCCGTCTTTATTGGATTCCTATATAACTTTATACTCGGTCAAGTCATATCGGAAGCAGATTAAAAGCATATTCAAATTGGAGAAGGCTGAGCAAACAATTCAAGTGGCTGCTATTGCTTCTCAGATGTAAAACCTTTCTTTGACGTTTCTTTTCTTTGTAAAAGTTTAGTCGTGATTTATATTCTTCTTTTTGAATAACAGATTTTTCGTGGTTTGTAGCATCCGTTTTTATAAATGACACATAATTATTGCCTACCGTCATTGACGTCTGAACATTCAAAATCCCTAGACGTCAGCAAGATGTGATTTTGATTTTTAAAGTAGCTCATAATTTTCATAAAGTTGGTGTGTGATTCTTCC</canonical>
            <polymorphic>TAGTTGGTTCGAAAATATAGGCAAAGGCCCGGATTACAAGTATGCATTGTAATGTTTATTCTTCTCATTCCAATTGTAATTGTGACAGTAAGAACTTAATCAAAAGGTCTGCATAAAGTTTTTATAATGCTTAGTGTGCTGAATTTTTTCTTATAATAACCGAAACATTCTCAACTGAAGATATGGACAAATTACGGAAGATCAACTCAAATGTCACCGATCATTCTGTCATTGGCTACATCACTTTGAAAACTATTCCGAGTCAAGCAATATTTTTTTGTATAACAGTATCTGTTTTTTTTCTTCCACCCATCGGCTTGCTGATCAGAAGGTTTGTTTTTCAGTATTTCTCAAGTTGTTGTTGAGAAAAGTTTCAGAAAATTTATCAATATTGTAAGTGCAACTCTAGAAAGGACAACTTCTACTTATCGGAAACAACAAAATCAAAGTTTTATGAATGTAGACAATTGAAAAATAATGATTTCAAGTATTGTTTTTTYAGGGACTCACTATTCAGGTATTTCTTCCAATCACTTGCTACCTTCCAATATTTCTTTTCCTTTTTGTAGTCATTGAACAAAAAAATTCCAGAAACCGAATCCCTCTTCGAGCAGTACTTCATTGTAATTTTTACGATTTTTCCGTCTTTATTGGATTCCTATATAACTTTATACTCGGTCAAGTCATATCGGAAGCAGATTAAAAGCATATTCAAATTGGAGAAGGCTGAGCAAACAATTCAAGTGGCTGCTATTGCTTCTCAGATGTAAAACCTTTCTTTGACGTTTCTTTTCTTTGTAAAAGTTTAGTCGTGATTTATATTCTTCTTTTTGAATAACAGATTTTTCGTGGTTTGTAGCATCCGTTTTTATAAATGACACATAATTATTGCCTACCGTCATTGACGTCTGAACATTCAAAATCCCTAGACGTCAGCAAGATGTGATTTTGATTTTTAAAGTAGCTCATAATTTTCATAAAGTTGGTGTGTGATTCTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTGTTTTTCAGTATTTCTCA</pcr_primer_p1>
		<pcr_primer_p2>TCAATGACTACAAAAAGGAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGTTTGTTTTTCAGTATTTCTCAAGTTGTTGTTGAGAAAAGTTTCAGAAAATTTATCAATATTGTAAGTGCAACTCTAGAAAGGACAACTTCTACTTATCGGAAACAACAAAATCAAAGTTTTATGAATGTAGACAATTGAAAAATAATGATTTCAAGTATTGTTTTTTTAGGGACTCACTATTCAGGTATTTCTTCCAATCACTTGCTACCTTCCAATATTTCTTTTCCTTTTTGTAGTCATTGA</canonical_amplicon>
		<polymorphic_amplicon>GGTTTGTTTTTCAGTATTTCTCAAGTTGTTGTTGAGAAAAGTTTCAGAAAATTTATCAATATTGTAAGTGCAACTCTAGAAAGGACAACTTCTACTTATCGGAAACAACAAAATCAAAGTTTTATGAATGTAGACAATTGAAAAATAATGATTTCAAGTATTGTTTTTTYAGGGACTCACTATTCAGGTATTTCTTCCAATCACTTGCTACCTTCCAATATTTCTTTTCCTTTTTGTAGTCATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18957</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>242099</contig_pos>
        <strand></strand>
        <context>AAAGTTTTAT[G/A]AATGTAGACA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTAGAAAGGACAACTTCTACTTATCGGAAACAACAAAATCAAAGTTTTAT</left_flank>
        <right_flank>AATGTAGACAATTGAAAAATAATGATTTCAAGTATTGTTTTTTTAGGGAC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATACTGTTTTGTAGTACTCGTGGAGCTCTATCGTACCTGATTTAGTTGGTTCGAAAATATAGGCAAAGGCCCGGATTACAAGTATGCATTGTAATGTTTATTCTTCTCATTCCAATTGTAATTGTGACAGTAAGAACTTAATCAAAAGGTCTGCATAAAGTTTTTATAATGCTTAGTGTGCTGAATTTTTTCTTATAATAACCGAAACATTCTCAACTGAAGATATGGACAAATTACGGAAGATCAACTCAAATGTCACCGATCATTCTGTCATTGGCTACATCACTTTGAAAACTATTCCGAGTCAAGCAATATTTTTTTGTATAACAGTATCTGTTTTTTTTCTTCCACCCATCGGCTTGCTGATCAGAAGGTTTGTTTTTCAGTATTTCTCAAGTTGTTGTTGAGAAAAGTTTCAGAAAATTTATCAATATTGTAAGTGCAACTCTAGAAAGGACAACTTCTACTTATCGGAAACAACAAAATCAAAGTTTTATGAATGTAGACAATTGAAAAATAATGATTTCAAGTATTGTTTTTTTAGGGACTCACTATTCAGGTATTTCTTCCAATCACTTGCTACCTTCCAATATTTCTTTTCCTTTTTGTAGTCATTGAACAAAAAAATTCCAGAAACCGAATCCCTCTTCGAGCAGTACTTCATTGTAATTTTTACGATTTTTCCGTCTTTATTGGATTCCTATATAACTTTATACTCGGTCAAGTCATATCGGAAGCAGATTAAAAGCATATTCAAATTGGAGAAGGCTGAGCAAACAATTCAAGTGGCTGCTATTGCTTCTCAGATGTAAAACCTTTCTTTGACGTTTCTTTTCTTTGTAAAAGTTTAGTCGTGATTTATATTCTTCTTTTTGAATAACAGATTTTTCGTGGTTTGTAGCATCCGTTTTTATAAATGACACATAATTATTGCCTACCGTCATTGACGTCTGAACATTCAAAATCCCTAGACGTCAGCAAGATGTGATTTTGATTTT</canonical>
            <polymorphic>TAATACTGTTTTGTAGTACTCGTGGAGCTCTATCGTACCTGATTTAGTTGGTTCGAAAATATAGGCAAAGGCCCGGATTACAAGTATGCATTGTAATGTTTATTCTTCTCATTCCAATTGTAATTGTGACAGTAAGAACTTAATCAAAAGGTCTGCATAAAGTTTTTATAATGCTTAGTGTGCTGAATTTTTTCTTATAATAACCGAAACATTCTCAACTGAAGATATGGACAAATTACGGAAGATCAACTCAAATGTCACCGATCATTCTGTCATTGGCTACATCACTTTGAAAACTATTCCGAGTCAAGCAATATTTTTTTGTATAACAGTATCTGTTTTTTTTCTTCCACCCATCGGCTTGCTGATCAGAAGGTTTGTTTTTCAGTATTTCTCAAGTTGTTGTTGAGAAAAGTTTCAGAAAATTTATCAATATTGTAAGTGCAACTCTAGAAAGGACAACTTCTACTTATCGGAAACAACAAAATCAAAGTTTTATRAATGTAGACAATTGAAAAATAATGATTTCAAGTATTGTTTTTTTAGGGACTCACTATTCAGGTATTTCTTCCAATCACTTGCTACCTTCCAATATTTCTTTTCCTTTTTGTAGTCATTGAACAAAAAAATTCCAGAAACCGAATCCCTCTTCGAGCAGTACTTCATTGTAATTTTTACGATTTTTCCGTCTTTATTGGATTCCTATATAACTTTATACTCGGTCAAGTCATATCGGAAGCAGATTAAAAGCATATTCAAATTGGAGAAGGCTGAGCAAACAATTCAAGTGGCTGCTATTGCTTCTCAGATGTAAAACCTTTCTTTGACGTTTCTTTTCTTTGTAAAAGTTTAGTCGTGATTTATATTCTTCTTTTTGAATAACAGATTTTTCGTGGTTTGTAGCATCCGTTTTTATAAATGACACATAATTATTGCCTACCGTCATTGACGTCTGAACATTCAAAATCCCTAGACGTCAGCAAGATGTGATTTTGATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTGTTTTTCAGTATTTCTCA</pcr_primer_p1>
		<pcr_primer_p2>TCAATGACTACAAAAAGGAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGTTTGTTTTTCAGTATTTCTCAAGTTGTTGTTGAGAAAAGTTTCAGAAAATTTATCAATATTGTAAGTGCAACTCTAGAAAGGACAACTTCTACTTATCGGAAACAACAAAATCAAAGTTTTATGAATGTAGACAATTGAAAAATAATGATTTCAAGTATTGTTTTTTTAGGGACTCACTATTCAGGTATTTCTTCCAATCACTTGCTACCTTCCAATATTTCTTTTCCTTTTTGTAGTCATTGA</canonical_amplicon>
		<polymorphic_amplicon>GGTTTGTTTTTCAGTATTTCTCAAGTTGTTGTTGAGAAAAGTTTCAGAAAATTTATCAATATTGTAAGTGCAACTCTAGAAAGGACAACTTCTACTTATCGGAAACAACAAAATCAAAGTTTTATRAATGTAGACAATTGAAAAATAATGATTTCAAGTATTGTTTTTTTAGGGACTCACTATTCAGGTATTTCTTCCAATCACTTGCTACCTTCCAATATTTCTTTTCCTTTTTGTAGTCATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18958</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>314929</contig_pos>
        <strand>+</strand>
        <context>CCCTTCACAT[A/G]GTAGCGAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATACTTCTTGTCGGTTCTCTCTATTTTTGATCTTCTCGTTCCCTTCACAT</left_flank>
        <right_flank>GTAGCGAAAATTGTTTGCAAAATAAATATGGTTTCATATCCTCGCCGAGA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCTTTCTCTGCAGCCAACAGATCGTTCCAGTAATCATGATATCGATTGAAAAATTCCGTGGCTTCCACGCGGCACTGAAATTATAAATATGAAATCAAGGGCCAGTTTTTGAAGAAAAAAAAAACTTACGCGCTTGATTACCATTTCCTTGGATGACAATACCCAGTGACGGGTTTCAGCACTATCGGCTTTGAGTTCAGCAAACATTCGATCGATTTCCTCTATCATGCTATTGTAGGCTTCATGATAATTGTAACAGCAGTAGGCTTCGAGTTGGACCGAATTCATTTCTCTTTCCATATCTTCTTCCATGTCGTCTTCCAGTTTGACCAGGAACTCATCTATTGCACTGGCGTGAACATCAGCCAAAACACAGTCTTCGTACATTCGATTTTTTTCAAATCTTTCAATCATTCCACGTGTGCTTGTTTGAAACACTTCAGATAATACTTCTTGTCGGTTCTCTCTATTTTTGATCTTCTCGTTCCCTTCACATGGTAGCGAAAATTGTTTGCAAAATAAATATGGTTTCATATCCTCGCCGAGAGTTTCACGAGTGTGATTGGCGAGCAGTTTGTAAAAATTGTGGCCCACTGTGAAACACTGAAATAAAAACACAATTATGATTTGGTTATGTAAATATTTTAGCACAATAGAAAGAAAACGAACCTGTACGTAAACTAAATGTTTCACCGCATCCAGACGATCAGCATGTTTGTCCTCCACTTCCTCAAATCCCGAATCAATTGCATATTCCATTCTCCTTATTGCTCTAGCACACGCTTTATCACAAATTAAGTCGTGCTCCTCAACTGTTTGAGAAGTGAATTTTAATATATCAATGAGGAAAAATAGTTCCGCCCGAAATACGTTGAGACCATAAGCATGAACGTCGAATCGAGTGTAGAACTGAACATCAGAAAGATGGTTTTTTGATGGTTTTGGCATAGCAGATTCCTGAAAATTGATAGTATTTTGCGAAACTGATGAAATGAAA</canonical>
            <polymorphic>TTTTCTTTCTCTGCAGCCAACAGATCGTTCCAGTAATCATGATATCGATTGAAAAATTCCGTGGCTTCCACGCGGCACTGAAATTATAAATATGAAATCAAGGGCCAGTTTTTGAAGAAAAAAAAAACTTACGCGCTTGATTACCATTTCCTTGGATGACAATACCCAGTGACGGGTTTCAGCACTATCGGCTTTGAGTTCAGCAAACATTCGATCGATTTCCTCTATCATGCTATTGTAGGCTTCATGATAATTGTAACAGCAGTAGGCTTCGAGTTGGACCGAATTCATTTCTCTTTCCATATCTTCTTCCATGTCGTCTTCCAGTTTGACCAGGAACTCATCTATTGCACTGGCGTGAACATCAGCCAAAACACAGTCTTCGTACATTCGATTTTTTTCAAATCTTTCAATCATTCCACGTGTGCTTGTTTGAAACACTTCAGATAATACTTCTTGTCGGTTCTCTCTATTTTTGATCTTCTCGTTCCCTTCACATRGTAGCGAAAATTGTTTGCAAAATAAATATGGTTTCATATCCTCGCCGAGAGTTTCACGAGTGTGATTGGCGAGCAGTTTGTAAAAATTGTGGCCCACTGTGAAACACTGAAATAAAAACACAATTATGATTTGGTTATGTAAATATTTTAGCACAATAGAAAGAAAACGAACCTGTACGTAAACTAAATGTTTCACCGCATCCAGACGATCAGCATGTTTGTCCTCCACTTCCTCAAATCCCGAATCAATTGCATATTCCATTCTCCTTATTGCTCTAGCACACGCTTTATCACAAATTAAGTCGTGCTCCTCAACTGTTTGAGAAGTGAATTTTAATATATCAATGAGGAAAAATAGTTCCGCCCGAAATACGTTGAGACCATAAGCATGAACGTCGAATCGAGTGTAGAACTGAACATCAGAAAGATGGTTTTTTGATGGTTTTGGCATAGCAGATTCCTGAAAATTGATAGTATTTTGCGAAACTGATGAAATGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>503 326 171</canonical_bands>
                <polymorphic_bands>829 171</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>217 191 184 174 112 67 38 17</canonical_bands>
                <polymorphic_bands>401 191 174 112 67 38 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGTCTTCGTACATTCGATTT</pcr_primer_p1>
		<pcr_primer_p2>TGTGTTTTTATTTCAGTGTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACAGTCTTCGTACATTCGATTTTTTTCAAATCTTTCAATCATTCCACGTGTGCTTGTTTGAAACACTTCAGATAATACTTCTTGTCGGTTCTCTCTATTTTTGATCTTCTCGTTCCCTTCACATGGTAGCGAAAATTGTTTGCAAAATAAATATGGTTTCATATCCTCGCCGAGAGTTTCACGAGTGTGATTGGCGAGCAGTTTGTAAAAATTGTGGCCCACTGTGAAACACTGAAATAAAAACACA</canonical_amplicon>
		<polymorphic_amplicon>ACAGTCTTCGTACATTCGATTTTTTTCAAATCTTTCAATCATTCCACGTGTGCTTGTTTGAAACACTTCAGATAATACTTCTTGTCGGTTCTCTCTATTTTTGATCTTCTCGTTCCCTTCACATRGTAGCGAAAATTGTTTGCAAAATAAATATGGTTTCATATCCTCGCCGAGAGTTTCACGAGTGTGATTGGCGAGCAGTTTGTAAAAATTGTGGCCCACTGTGAAACACTGAAATAAAAACACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18959</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>315264</contig_pos>
        <strand>+</strand>
        <context>AAGTGAATTT[C/T]AATMTATCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTTTATCACAAATTAAGTCGTGCTCCTCAACTGTTTGAGAAGTGAATTT</left_flank>
        <right_flank>AATATATCAATGAGGAAAAATAGTTCCGCCCGAAATACGTTGAGACCATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAACTCATCTATTGCACTGGCGTGAACATCAGCCAAAACACAGTCTTCGTACATTCGATTTTTTTCAAATCTTTCAATCATTCCACGTGTGCTTGTTTGAAACACTTCAGATAATACTTCTTGTCGGTTCTCTCTATTTTTGATCTTCTCGTTCCCTTCACATGGTAGCGAAAATTGTTTGCAAAATAAATATGGTTTCATATCCTCGCCGAGAGTTTCACGAGTGTGATTGGCGAGCAGTTTGTAAAAATTGTGGCCCACTGTGAAACACTGAAATAAAAACACAATTATGATTTGGTTATGTAAATATTTTAGCACAATAGAAAGAAAACGAACCTGTACGTAAACTAAATGTTTCACCGCATCCAGACGATCAGCATGTTTGTCCTCCACTTCCTCAAATCCCGAATCAATTGCATATTCCATTCTCCTTATTGCTCTAGCACACGCTTTATCACAAATTAAGTCGTGCTCCTCAACTGTTTGAGAAGTGAATTTTAATATATCAATGAGGAAAAATAGTTCCGCCCGAAATACGTTGAGACCATAAGCATGAACGTCGAATCGAGTGTAGAACTGAACATCAGAAAGATGGTTTTTTGATGGTTTTGGCATAGCAGATTCCTGAAAATTGATAGTATTTTGCGAAACTGATGAAATGAAACAAAGCTAAAATGATGACAAAGCGAAATATTTCAAGCTGGGAACAACAGCAAGAAAAAACAAAACAAAAATTGAAAGAAAACAACATTTTTAGTTTTATTCATATTGACGTTTAATAATTAATACTAAACCCTCAACCAAAAAAAATTACGATATTGTCGGNNNNNNNNNNAAAATCTCATTAAATCCGATGATCTCCCAAGTGGCGCTAAAACACCACGCCGCACTTGCAAAGCGATGGGCGGAGCGTCGGTGTGGGGAGGCGGGAATCAAAGTACGCAAACACCGAGTGTCACTTTTTTTATTCCGACAATAGAACACTAAAATACAAGAAAG</canonical>
            <polymorphic>GGAACTCATCTATTGCACTGGCGTGAACATCAGCCAAAACACAGTCTTCGTACATTCGATTTTTTTCAAATCTTTCAATCATTCCACGTGTGCTTGTTTGAAACACTTCAGATAATACTTCTTGTCGGTTCTCTCTATTTTTGATCTTCTCGTTCCCTTCACATGGTAGCGAAAATTGTTTGCAAAATAAATATGGTTTCATATCCTCGCCGAGAGTTTCACGAGTGTGATTGGCGAGCAGTTTGTAAAAATTGTGGCCCACTGTGAAACACTGAAATAAAAACACAATTATGATTTGGTTATGTAAATATTTTAGCACAATAGAAAGAAAACGAACCTGTACGTAAACTAAATGTTTCACCGCATCCAGACGATCAGCATGTTTGTCCTCCACTTCCTCAAATCCCGAATCAATTGCATATTCCATTCTCCTTATTGCTCTAGCACACGCTTTATCACAAATTAAGTCGTGCTCCTCAACTGTTTGAGAAGTGAATTTYAATATATCAATGAGGAAAAATAGTTCCGCCCGAAATACGTTGAGACCATAAGCATGAACGTCGAATCGAGTGTAGAACTGAACATCAGAAAGATGGTTTTTTGATGGTTTTGGCATAGCAGATTCCTGAAAATTGATAGTATTTTGCGAAACTGATGAAATGAAACAAAGCTAAAATGATGACAAAGCGAAATATTTCAAGCTGGGAACAACAGCAAGAAAAAACAAAACAAAAATTGAAAGAAAACAACATTTTTAGTTTTATTCATATTGACGTTTAATAATTAATACTAAACCCTCAACCAAAAAAAATTACGATATTGTCGGNNNNNNNNNNAAAATCTCATTAAATCCGATGATCTCCCAAGTGGCGCTAAAACACCACGCCGCACTTGCAAAGCGATGGGCGGAGCGTCGGTGTGGGGAGGCGGGAATCAAAGTACGCAAACACCGAGTGTCACTTTTTTTATTCCGACAATAGAACACTAAAATACAAGAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>463 278 154 62 36 7</canonical_bands>
                <polymorphic_bands>463 314 154 62 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTGTACGTAAACTAAATGTTTCA</pcr_primer_p1>
		<pcr_primer_p2>ATGTTCAGTTCTACACTCGATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCTGTACGTAAACTAAATGTTTCACCGCATCCAGACGATCAGCATGTTTGTCCTCCACTTCCTCAAATCCCGAATCAATTGCATATTCCATTCTCCTTATTGCTCTAGCACACGCTTTATCACAAATTAAGTCGTGCTCCTCAACTGTTTGAGAAGTGAATTTTAATATATCAATGAGGAAAAATAGTTCCGCCCGAAATACGTTGAGACCATAAGCATGAACGTCGAATCGAGTGTAGAACTGAACAT</canonical_amplicon>
		<polymorphic_amplicon>CCTGTACGTAAACTAAATGTTTCACCGCATCCAGACGATCAGCATGTTTGTCCTCCACTTCCTCAAATCCCGAATCAATTGCATATTCCATTCTCCTTATTGCTCTAGCACACGCTTTATCACAAATTAAGTCGTGCTCCTCAACTGTTTGAGAAGTGAATTTYAATATATCAATGAGGAAAAATAGTTCCGCCCGAAATACGTTGAGACCATAAGCATGAACGTCGAATCGAGTGTAGAACTGAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18960</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>315268</contig_pos>
        <strand>+</strand>
        <context>GAATTTYAAT[A/C]TATCAATGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATCACAAATTAAGTCGTGCTCCTCAACTGTTTGAGAAGTGAATTTTAAT</left_flank>
        <right_flank>TATCAATGAGGAAAAATAGTTCCGCCCGAAATACGTTGAGACCATAAGCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCATCTATTGCACTGGCGTGAACATCAGCCAAAACACAGTCTTCGTACATTCGATTTTTTTCAAATCTTTCAATCATTCCACGTGTGCTTGTTTGAAACACTTCAGATAATACTTCTTGTCGGTTCTCTCTATTTTTGATCTTCTCGTTCCCTTCACATGGTAGCGAAAATTGTTTGCAAAATAAATATGGTTTCATATCCTCGCCGAGAGTTTCACGAGTGTGATTGGCGAGCAGTTTGTAAAAATTGTGGCCCACTGTGAAACACTGAAATAAAAACACAATTATGATTTGGTTATGTAAATATTTTAGCACAATAGAAAGAAAACGAACCTGTACGTAAACTAAATGTTTCACCGCATCCAGACGATCAGCATGTTTGTCCTCCACTTCCTCAAATCCCGAATCAATTGCATATTCCATTCTCCTTATTGCTCTAGCACACGCTTTATCACAAATTAAGTCGTGCTCCTCAACTGTTTGAGAAGTGAATTTTAATATATCAATGAGGAAAAATAGTTCCGCCCGAAATACGTTGAGACCATAAGCATGAACGTCGAATCGAGTGTAGAACTGAACATCAGAAAGATGGTTTTTTGATGGTTTTGGCATAGCAGATTCCTGAAAATTGATAGTATTTTGCGAAACTGATGAAATGAAACAAAGCTAAAATGATGACAAAGCGAAATATTTCAAGCTGGGAACAACAGCAAGAAAAAACAAAACAAAAATTGAAAGAAAACAACATTTTTAGTTTTATTCATATTGACGTTTAATAATTAATACTAAACCCTCAACCAAAAAAAATTACGATATTGTCGGNNNNNNNNNNAAAATCTCATTAAATCCGATGATCTCCCAAGTGGCGCTAAAACACCACGCCGCACTTGCAAAGCGATGGGCGGAGCGTCGGTGTGGGGAGGCGGGAATCAAAGTACGCAAACACCGAGTGTCACTTTTTTTATTCCGACAATAGAACACTAAAATACAAGAAAGTTCA</canonical>
            <polymorphic>CTCATCTATTGCACTGGCGTGAACATCAGCCAAAACACAGTCTTCGTACATTCGATTTTTTTCAAATCTTTCAATCATTCCACGTGTGCTTGTTTGAAACACTTCAGATAATACTTCTTGTCGGTTCTCTCTATTTTTGATCTTCTCGTTCCCTTCACATGGTAGCGAAAATTGTTTGCAAAATAAATATGGTTTCATATCCTCGCCGAGAGTTTCACGAGTGTGATTGGCGAGCAGTTTGTAAAAATTGTGGCCCACTGTGAAACACTGAAATAAAAACACAATTATGATTTGGTTATGTAAATATTTTAGCACAATAGAAAGAAAACGAACCTGTACGTAAACTAAATGTTTCACCGCATCCAGACGATCAGCATGTTTGTCCTCCACTTCCTCAAATCCCGAATCAATTGCATATTCCATTCTCCTTATTGCTCTAGCACACGCTTTATCACAAATTAAGTCGTGCTCCTCAACTGTTTGAGAAGTGAATTTTAATMTATCAATGAGGAAAAATAGTTCCGCCCGAAATACGTTGAGACCATAAGCATGAACGTCGAATCGAGTGTAGAACTGAACATCAGAAAGATGGTTTTTTGATGGTTTTGGCATAGCAGATTCCTGAAAATTGATAGTATTTTGCGAAACTGATGAAATGAAACAAAGCTAAAATGATGACAAAGCGAAATATTTCAAGCTGGGAACAACAGCAAGAAAAAACAAAACAAAAATTGAAAGAAAACAACATTTTTAGTTTTATTCATATTGACGTTTAATAATTAATACTAAACCCTCAACCAAAAAAAATTACGATATTGTCGGNNNNNNNNNNAAAATCTCATTAAATCCGATGATCTCCCAAGTGGCGCTAAAACACCACGCCGCACTTGCAAAGCGATGGGCGGAGCGTCGGTGTGGGGAGGCGGGAATCAAAGTACGCAAACACCGAGTGTCACTTTTTTTATTCCGACAATAGAACACTAAAATACAAGAAAGTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTGTACGTAAACTAAATGTTTCA</pcr_primer_p1>
		<pcr_primer_p2>ATGTTCAGTTCTACACTCGATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCTGTACGTAAACTAAATGTTTCACCGCATCCAGACGATCAGCATGTTTGTCCTCCACTTCCTCAAATCCCGAATCAATTGCATATTCCATTCTCCTTATTGCTCTAGCACACGCTTTATCACAAATTAAGTCGTGCTCCTCAACTGTTTGAGAAGTGAATTTTAATATATCAATGAGGAAAAATAGTTCCGCCCGAAATACGTTGAGACCATAAGCATGAACGTCGAATCGAGTGTAGAACTGAACAT</canonical_amplicon>
		<polymorphic_amplicon>CCTGTACGTAAACTAAATGTTTCACCGCATCCAGACGATCAGCATGTTTGTCCTCCACTTCCTCAAATCCCGAATCAATTGCATATTCCATTCTCCTTATTGCTCTAGCACACGCTTTATCACAAATTAAGTCGTGCTCCTCAACTGTTTGAGAAGTGAATTTTAATMTATCAATGAGGAAAAATAGTTCCGCCCGAAATACGTTGAGACCATAAGCATGAACGTCGAATCGAGTGTAGAACTGAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18961</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>319317</contig_pos>
        <strand>+</strand>
        <context>CTCGACTTCA[A/G]CAGTCCAGGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTGTTCACCATATTTTTGAGGTCTTCCAGTTTTGAGGTCTCGACTTCA</left_flank>
        <right_flank>CAGTCCAGGCTTCTTTTTCCTTTTTTATCTTCCGGTCCCAGAACTGTTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTCAACTGATAAAATGGTTTTCATAAAATAACTAACATTTTATCAATTGACTGAGTTTTGGCAGTTTTCGAAGGAACTCAGATACTTGAGCTCAAAGTGCACGTAAACGACGTGCAGCATTTACTGTAAAAAGATGACTAATGGCATAAAGATAAGGTTCTGAATCGTGATTCTGCCTCAAGAAAGTTACCATATCATTATTCATTGCTTCTAATAGTGTGTTAATCGACTGCTCATCGTCCTTCTTGCTGTGACCAGTACATTTGAGGCCTGTGATTGAAAGCAGATCTGATGTTTGTTTAAGAATGTCTCGCGCCATCTGTAATTGATTCTCCACATCTTGTTTGGTTTCAGTCTTTGCTGCTTTTTGACGTTCCGCACTTTGCTCTTCAATTTTTGTTTGAATGTTCTTCTGATCTTCAAGCGAGATTCCTAGTGTTTCCGGAGAGTTGTTCACCATATTTTTGAGGTCTTCCAGTTTTGAGGTCTCGACTTCAACAGTCCAGGCTTCTTTTTCCTTTTTTATCTTCCGGTCCCAGAACTGTTCATGTTCTTTTTCAGCTTGAGCGTTGCACTGAAATATTTCACTTACATGGATGATGAATAAACATTTCCAATTACCTTCTGGCCTGCTTTTTCACGCCATTCCGAGATGCTCGCTGAAGGCATGTTCGGATCACTGAGGTAACCCTTAAATAACGTATCCAGTGTGTATTCCATCTCTTTCATTCCATCATTTTTGGATTTTGCCGTTTCTTCGTTCAAATATTCAAGTCGCTTGTTCCAATTCATTGTAATGTGCTTCTTTGGGATTGAAAAAAGTGCCACGGAGCGAAAAGAAAGCAGAGCCAGTTCAGTGAATTCGTCGAAGACAGCATTGAATTCGTCAACTGGACAATTTGTTTTTTGGTCCATATTCATTGGATATGAAGCTTCAAGCAAATCTTCAAGTTGACAAAAAGTTTGGTATGTATGAAAATAAATAAGGAGAAATATCC</canonical>
            <polymorphic>TTGTCAACTGATAAAATGGTTTTCATAAAATAACTAACATTTTATCAATTGACTGAGTTTTGGCAGTTTTCGAAGGAACTCAGATACTTGAGCTCAAAGTGCACGTAAACGACGTGCAGCATTTACTGTAAAAAGATGACTAATGGCATAAAGATAAGGTTCTGAATCGTGATTCTGCCTCAAGAAAGTTACCATATCATTATTCATTGCTTCTAATAGTGTGTTAATCGACTGCTCATCGTCCTTCTTGCTGTGACCAGTACATTTGAGGCCTGTGATTGAAAGCAGATCTGATGTTTGTTTAAGAATGTCTCGCGCCATCTGTAATTGATTCTCCACATCTTGTTTGGTTTCAGTCTTTGCTGCTTTTTGACGTTCCGCACTTTGCTCTTCAATTTTTGTTTGAATGTTCTTCTGATCTTCAAGCGAGATTCCTAGTGTTTCCGGAGAGTTGTTCACCATATTTTTGAGGTCTTCCAGTTTTGAGGTCTCGACTTCARCAGTCCAGGCTTCTTTTTCCTTTTTTATCTTCCGGTCCCAGAACTGTTCATGTTCTTTTTCAGCTTGAGCGTTGCACTGAAATATTTCACTTACATGGATGATGAATAAACATTTCCAATTACCTTCTGGCCTGCTTTTTCACGCCATTCCGAGATGCTCGCTGAAGGCATGTTCGGATCACTGAGGTAACCCTTAAATAACGTATCCAGTGTGTATTCCATCTCTTTCATTCCATCATTTTTGGATTTTGCCGTTTCTTCGTTCAAATATTCAAGTCGCTTGTTCCAATTCATTGTAATGTGCTTCTTTGGGATTGAAAAAAGTGCCACGGAGCGAAAAGAAAGCAGAGCCAGTTCAGTGAATTCGTCGAAGACAGCATTGAATTCGTCAACTGGACAATTTGTTTTTTGGTCCATATTCATTGGATATGAAGCTTCAAGCAAATCTTCAAGTTGACAAAAAGTTTGGTATGTATGAAAATAAATAAGGAGAAATATCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>455 375 127 43</canonical_bands>
                <polymorphic_bands>455 418 127</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTTCAATTTTTGTTTGAATGT</pcr_primer_p1>
		<pcr_primer_p2>CAGAAGGTAATTGGAAATGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CTCTTCAATTTTTGTTTGAATGTTCTTCTGATCTTCAAGCGAGATTCCTAGTGTTTCCGGAGAGTTGTTCACCATATTTTTGAGGTCTTCCAGTTTTGAGGTCTCGACTTCAACAGTCCAGGCTTCTTTTTCCTTTTTTATCTTCCGGTCCCAGAACTGTTCATGTTCTTTTTCAGCTTGAGCGTTGCACTGAAATATTTCACTTACATGGATGATGAATAAACATTTCCAATTACCTTCTG</canonical_amplicon>
		<polymorphic_amplicon>CTCTTCAATTTTTGTTTGAATGTTCTTCTGATCTTCAAGCGAGATTCCTAGTGTTTCCGGAGAGTTGTTCACCATATTTTTGAGGTCTTCCAGTTTTGAGGTCTCGACTTCARCAGTCCAGGCTTCTTTTTCCTTTTTTATCTTCCGGTCCCAGAACTGTTCATGTTCTTTTTCAGCTTGAGCGTTGCACTGAAATATTTCACTTACATGGATGATGAATAAACATTTCCAATTACCTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18962</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>325079</contig_pos>
        <strand>+</strand>
        <context>TATAATWRGG[G/T]GGTGTAACAg</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGCAAAGTTATAAAGTAGCTTCAGAGATGTATCTTTTTTTATAATAAGG</left_flank>
        <right_flank>GGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAATCTCC</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCGATTCTGTTAGTTAGTTTTCTTGGAGAGCCATAGAAGTGTACCTTTCGGAGTTCTTACCTACCATAATCCCCGAAAACTCTCCCCCTAATTGTTCCGATAAATAATTGCTCTACTAGTTGCTCAAGAGAAATCAACATTTAGTATTACTCACCGCTTTGCGAACCACTTTGTCCCCTTCAGCAAAACATAACTTCTTATTCATTTTTCGAATGGAAGAAAAACTCGAAATTCACAAATCTGAGCAATGGGAGTCGTGGAAGTGCGCGTCGTGGCGAGGAGCGTCTACTCGCGTGTAGCTCCGCCTCTTTTTTTTTGGTGTCGCTTCAAGAGAAAAAAGGAAATAAAACATCCCCAGAATTGGCTTTTCCAACGTTTTGAAAGAAAGGGAACCCCTAACAACGGAGCACTAGATTCAATATGTTTTTGGGGTACTTTTTGAAACTTCTTGCAAAGTTATAAAGTAGCTTCAGAGATGTATCTTTTTTTATAATAAGGTGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAATCTCCTATTTTCGAAATTTCGGAATCATTCCATTTTCCCATCACAAAAATGTCGAAAATTAAGAAAAATTGACAAAAAAATTTCGAAAACGCAAAACAAGGTTAAAAGTTAGTCCGCTCAAGACCTGCAAGCAAATTTTGCGCATGCGCCTTCGACATACCGTAGTCCGAAAATCTTCAATGCCGAAACAAAGCTTCAAAAATGTTTCCGTCAAAATTTTTTCGGAATTCCGATATCTGTTTTTAACATCTCTATTTCTCCGAGTAAGGTATGTTCTAAGTTTCAGTAAACACTCAAATATATTCAAATTTCAAAATCGAAAGTGTCATTCAATGTTTGGTGTCATTCCTTATTGTCACGCGACGCAACGTTTAGTGCGTCACCTTTATTATCGATAAGTTCACCAAAATACTTCATGAGCTCACCTCATCTGGCCGTGGAATATTTAGAGGGAA</canonical>
            <polymorphic>TCCGATTCTGTTAGTTAGTTTTCTTGGAGAGCCATAGAAGTGTACCTTTCGGAGTTCTTACCTACCATAATCCCCGAAAACTCTCCCCCTAATTGTTCCGATAAATAATTGCTCTACTAGTTGCTCAAGAGAAATCAACATTTAGTATTACTCACCGCTTTGCGAACCACTTTGTCCCCTTCAGCAAAACATAACTTCTTATTCATTTTTCGAATGGAAGAAAAACTCGAAATTCACAAATCTGAGCAATGGGAGTCGTGGAAGTGCGCGTCGTGGCGAGGAGCGTCTACTCGCGTGTAGCTCCGCCTCTTTTTTTTTGGTGTCGCTTCAAGAGAAAAAAGGAAATAAAACATCCCCAGAATTGGCTTTTCCAACGTTTTGAAAGAAAGGGAACCCCTAACAACGGAGCACTAGATTCAATATGTTTTTGGGGTACTTTTTGAAACTTCTTGCAAAGTTATAAAGTAGCTTCAGAGATGTATCTTTTTTTATAATAAGGKGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAATCTCCTATTTTCGAAATTTCGGAATCATTCCATTTTCCCATCACAAAAATGTCGAAAATTAAGAAAAATTGACAAAAAAATTTCGAAAACGCAAAACAAGGTTAAAAGTTAGTCCGCTCAAGACCTGCAAGCAAATTTTGCGCATGCGCCTTCGACATACCGTAGTCCGAAAATCTTCAATGCCGAAACAAAGCTTCAAAAATGTTTCCGTCAAAATTTTTTCGGAATTCCGATATCTGTTTTTAACATCTCTATTTCTCCGAGTAAGGTATGTTCTAAGTTTCAGTAAACACTCAAATATATTCAAATTTCAAAATCGAAAGTGTCATTCAATGTTTGGTGTCATTCCTTATTGTCACGCGACGCAACGTTTAGTGCGTCACCTTTATTATCGATAAGTTCACCAAAATACTTCATGAGCTCACCTCATCTGGCCGTGGAATATTTAGAGGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>249 112 91 88 84 67 42 33 25 24 22 21 21 19 17 16 16 15 15 9 6 5 3</canonical_bands>
                <polymorphic_bands>249 112 94 88 84 67 42 33 25 24 22 21 21 19 17 16 16 15 15 9 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAACTTCTTGCAAAGTTATAAAGTA</pcr_primer_p1>
		<pcr_primer_p2>GGAGAAATAGAGATGTTAAAAACAG</pcr_primer_p2>
		<pcr_amplicon_size>365</pcr_amplicon_size>
		<canonical_amplicon>GAAACTTCTTGCAAAGTTATAAAGTAGCTTCAGAGATGTATCTTTTTTTATAATAAGGTGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAATCTCCTATTTTCGAAATTTCGGAATCATTCCATTTTCCCATCACAAAAATGTCGAAAATTAAGAAAAATTGACAAAAAAATTTCGAAAACGCAAAACAAGGTTAAAAGTTAGTCCGCTCAAGACCTGCAAGCAAATTTTGCGCATGCGCCTTCGACATACCGTAGTCCGAAAATCTTCAATGCCGAAACAAAGCTTCAAAAATGTTTCCGTCAAAATTTTTTCGGAATTCCGATATCTGTTTTTAACATCTCTATTTCTCC</canonical_amplicon>
		<polymorphic_amplicon>GAAACTTCTTGCAAAGTTATAAAGTAGCTTCAGAGATGTATCTTTTTTTATAATAAGGKGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAATCTCCTATTTTCGAAATTTCGGAATCATTCCATTTTCCCATCACAAAAATGTCGAAAATTAAGAAAAATTGACAAAAAAATTTCGAAAACGCAAAACAAGGTTAAAAGTTAGTCCGCTCAAGACCTGCAAGCAAATTTTGCGCATGCGCCTTCGACATACCGTAGTCCGAAAATCTTCAATGCCGAAACAAAGCTTCAAAAATGTTTCCGTCAAAATTTTTTCGGAATTCCGATATCTGTTTTTAACATCTCTATTTCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18963</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>325076</contig_pos>
        <strand>+</strand>
        <context>TTTTATAATW[A/G]GGKGGTGTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTTGCAAAGTTATAAAGTAGCTTCAGAGATGTATCTTTTTTTATAATA</left_flank>
        <right_flank>GGTGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAATC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTCCGATTCTGTTAGTTAGTTTTCTTGGAGAGCCATAGAAGTGTACCTTTCGGAGTTCTTACCTACCATAATCCCCGAAAACTCTCCCCCTAATTGTTCCGATAAATAATTGCTCTACTAGTTGCTCAAGAGAAATCAACATTTAGTATTACTCACCGCTTTGCGAACCACTTTGTCCCCTTCAGCAAAACATAACTTCTTATTCATTTTTCGAATGGAAGAAAAACTCGAAATTCACAAATCTGAGCAATGGGAGTCGTGGAAGTGCGCGTCGTGGCGAGGAGCGTCTACTCGCGTGTAGCTCCGCCTCTTTTTTTTTGGTGTCGCTTCAAGAGAAAAAAGGAAATAAAACATCCCCAGAATTGGCTTTTCCAACGTTTTGAAAGAAAGGGAACCCCTAACAACGGAGCACTAGATTCAATATGTTTTTGGGGTACTTTTTGAAACTTCTTGCAAAGTTATAAAGTAGCTTCAGAGATGTATCTTTTTTTATAATAAGGTGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAATCTCCTATTTTCGAAATTTCGGAATCATTCCATTTTCCCATCACAAAAATGTCGAAAATTAAGAAAAATTGACAAAAAAATTTCGAAAACGCAAAACAAGGTTAAAAGTTAGTCCGCTCAAGACCTGCAAGCAAATTTTGCGCATGCGCCTTCGACATACCGTAGTCCGAAAATCTTCAATGCCGAAACAAAGCTTCAAAAATGTTTCCGTCAAAATTTTTTCGGAATTCCGATATCTGTTTTTAACATCTCTATTTCTCCGAGTAAGGTATGTTCTAAGTTTCAGTAAACACTCAAATATATTCAAATTTCAAAATCGAAAGTGTCATTCAATGTTTGGTGTCATTCCTTATTGTCACGCGACGCAACGTTTAGTGCGTCACCTTTATTATCGATAAGTTCACCAAAATACTTCATGAGCTCACCTCATCTGGCCGTGGAATATTTAGAGG</canonical>
            <polymorphic>GAGTCCGATTCTGTTAGTTAGTTTTCTTGGAGAGCCATAGAAGTGTACCTTTCGGAGTTCTTACCTACCATAATCCCCGAAAACTCTCCCCCTAATTGTTCCGATAAATAATTGCTCTACTAGTTGCTCAAGAGAAATCAACATTTAGTATTACTCACCGCTTTGCGAACCACTTTGTCCCCTTCAGCAAAACATAACTTCTTATTCATTTTTCGAATGGAAGAAAAACTCGAAATTCACAAATCTGAGCAATGGGAGTCGTGGAAGTGCGCGTCGTGGCGAGGAGCGTCTACTCGCGTGTAGCTCCGCCTCTTTTTTTTTGGTGTCGCTTCAAGAGAAAAAAGGAAATAAAACATCCCCAGAATTGGCTTTTCCAACGTTTTGAAAGAAAGGGAACCCCTAACAACGGAGCACTAGATTCAATATGTTTTTGGGGTACTTTTTGAAACTTCTTGCAAAGTTATAAAGTAGCTTCAGAGATGTATCTTTTTTTATAATARGGTGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAATCTCCTATTTTCGAAATTTCGGAATCATTCCATTTTCCCATCACAAAAATGTCGAAAATTAAGAAAAATTGACAAAAAAATTTCGAAAACGCAAAACAAGGTTAAAAGTTAGTCCGCTCAAGACCTGCAAGCAAATTTTGCGCATGCGCCTTCGACATACCGTAGTCCGAAAATCTTCAATGCCGAAACAAAGCTTCAAAAATGTTTCCGTCAAAATTTTTTCGGAATTCCGATATCTGTTTTTAACATCTCTATTTCTCCGAGTAAGGTATGTTCTAAGTTTCAGTAAACACTCAAATATATTCAAATTTCAAAATCGAAAGTGTCATTCAATGTTTGGTGTCATTCCTTATTGTCACGCGACGCAACGTTTAGTGCGTCACCTTTATTATCGATAAGTTCACCAAAATACTTCATGAGCTCACCTCATCTGGCCGTGGAATATTTAGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACTTCTTGCAAAGTTATAAAGTA</pcr_primer_p1>
		<pcr_primer_p2>GGAGAAATAGAGATGTTAAAAACAG</pcr_primer_p2>
		<pcr_amplicon_size>365</pcr_amplicon_size>
		<canonical_amplicon>GAAACTTCTTGCAAAGTTATAAAGTAGCTTCAGAGATGTATCTTTTTTTATAATAAGGTGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAATCTCCTATTTTCGAAATTTCGGAATCATTCCATTTTCCCATCACAAAAATGTCGAAAATTAAGAAAAATTGACAAAAAAATTTCGAAAACGCAAAACAAGGTTAAAAGTTAGTCCGCTCAAGACCTGCAAGCAAATTTTGCGCATGCGCCTTCGACATACCGTAGTCCGAAAATCTTCAATGCCGAAACAAAGCTTCAAAAATGTTTCCGTCAAAATTTTTTCGGAATTCCGATATCTGTTTTTAACATCTCTATTTCTCC</canonical_amplicon>
		<polymorphic_amplicon>GAAACTTCTTGCAAAGTTATAAAGTAGCTTCAGAGATGTATCTTTTTTTATAATARGGTGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAATCTCCTATTTTCGAAATTTCGGAATCATTCCATTTTCCCATCACAAAAATGTCGAAAATTAAGAAAAATTGACAAAAAAATTTCGAAAACGCAAAACAAGGTTAAAAGTTAGTCCGCTCAAGACCTGCAAGCAAATTTTGCGCATGCGCCTTCGACATACCGTAGTCCGAAAATCTTCAATGCCGAAACAAAGCTTCAAAAATGTTTCCGTCAAAATTTTTTCGGAATTCCGATATCTGTTTTTAACATCTCTATTTCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18964</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>325075</contig_pos>
        <strand>+</strand>
        <context>YTTTTATAAT[A/T]RGGKGGTGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTCTTGCAAAGTTATAAAGTAGCTTCAGAGATGTATCTTTTTTTATAAT</left_flank>
        <right_flank>AGGTGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGTCCGATTCTGTTAGTTAGTTTTCTTGGAGAGCCATAGAAGTGTACCTTTCGGAGTTCTTACCTACCATAATCCCCGAAAACTCTCCCCCTAATTGTTCCGATAAATAATTGCTCTACTAGTTGCTCAAGAGAAATCAACATTTAGTATTACTCACCGCTTTGCGAACCACTTTGTCCCCTTCAGCAAAACATAACTTCTTATTCATTTTTCGAATGGAAGAAAAACTCGAAATTCACAAATCTGAGCAATGGGAGTCGTGGAAGTGCGCGTCGTGGCGAGGAGCGTCTACTCGCGTGTAGCTCCGCCTCTTTTTTTTTGGTGTCGCTTCAAGAGAAAAAAGGAAATAAAACATCCCCAGAATTGGCTTTTCCAACGTTTTGAAAGAAAGGGAACCCCTAACAACGGAGCACTAGATTCAATATGTTTTTGGGGTACTTTTTGAAACTTCTTGCAAAGTTATAAAGTAGCTTCAGAGATGTATCTTTTTTTATAATAAGGTGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAATCTCCTATTTTCGAAATTTCGGAATCATTCCATTTTCCCATCACAAAAATGTCGAAAATTAAGAAAAATTGACAAAAAAATTTCGAAAACGCAAAACAAGGTTAAAAGTTAGTCCGCTCAAGACCTGCAAGCAAATTTTGCGCATGCGCCTTCGACATACCGTAGTCCGAAAATCTTCAATGCCGAAACAAAGCTTCAAAAATGTTTCCGTCAAAATTTTTTCGGAATTCCGATATCTGTTTTTAACATCTCTATTTCTCCGAGTAAGGTATGTTCTAAGTTTCAGTAAACACTCAAATATATTCAAATTTCAAAATCGAAAGTGTCATTCAATGTTTGGTGTCATTCCTTATTGTCACGCGACGCAACGTTTAGTGCGTCACCTTTATTATCGATAAGTTCACCAAAATACTTCATGAGCTCACCTCATCTGGCCGTGGAATATTTAGAG</canonical>
            <polymorphic>CGAGTCCGATTCTGTTAGTTAGTTTTCTTGGAGAGCCATAGAAGTGTACCTTTCGGAGTTCTTACCTACCATAATCCCCGAAAACTCTCCCCCTAATTGTTCCGATAAATAATTGCTCTACTAGTTGCTCAAGAGAAATCAACATTTAGTATTACTCACCGCTTTGCGAACCACTTTGTCCCCTTCAGCAAAACATAACTTCTTATTCATTTTTCGAATGGAAGAAAAACTCGAAATTCACAAATCTGAGCAATGGGAGTCGTGGAAGTGCGCGTCGTGGCGAGGAGCGTCTACTCGCGTGTAGCTCCGCCTCTTTTTTTTTGGTGTCGCTTCAAGAGAAAAAAGGAAATAAAACATCCCCAGAATTGGCTTTTCCAACGTTTTGAAAGAAAGGGAACCCCTAACAACGGAGCACTAGATTCAATATGTTTTTGGGGTACTTTTTGAAACTTCTTGCAAAGTTATAAAGTAGCTTCAGAGATGTATCTTTTTTTATAATWAGGTGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAATCTCCTATTTTCGAAATTTCGGAATCATTCCATTTTCCCATCACAAAAATGTCGAAAATTAAGAAAAATTGACAAAAAAATTTCGAAAACGCAAAACAAGGTTAAAAGTTAGTCCGCTCAAGACCTGCAAGCAAATTTTGCGCATGCGCCTTCGACATACCGTAGTCCGAAAATCTTCAATGCCGAAACAAAGCTTCAAAAATGTTTCCGTCAAAATTTTTTCGGAATTCCGATATCTGTTTTTAACATCTCTATTTCTCCGAGTAAGGTATGTTCTAAGTTTCAGTAAACACTCAAATATATTCAAATTTCAAAATCGAAAGTGTCATTCAATGTTTGGTGTCATTCCTTATTGTCACGCGACGCAACGTTTAGTGCGTCACCTTTATTATCGATAAGTTCACCAAAATACTTCATGAGCTCACCTCATCTGGCCGTGGAATATTTAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGTTTTTGGGGTACTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>GGAGAAATAGAGATGTTAAAAACAG</pcr_primer_p2>
		<pcr_amplicon_size>386</pcr_amplicon_size>
		<canonical_amplicon>TATGTTTTTGGGGTACTTTTTGAAACTTCTTGCAAAGTTATAAAGTAGCTTCAGAGATGTATCTTTTTTTATAATAAGGTGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAATCTCCTATTTTCGAAATTTCGGAATCATTCCATTTTCCCATCACAAAAATGTCGAAAATTAAGAAAAATTGACAAAAAAATTTCGAAAACGCAAAACAAGGTTAAAAGTTAGTCCGCTCAAGACCTGCAAGCAAATTTTGCGCATGCGCCTTCGACATACCGTAGTCCGAAAATCTTCAATGCCGAAACAAAGCTTCAAAAATGTTTCCGTCAAAATTTTTTCGGAATTCCGATATCTGTTTTTAACATCTCTATTTCTCC</canonical_amplicon>
		<polymorphic_amplicon>TATGTTTTTGGGGTACTTTTTGAAACTTCTTGCAAAGTTATAAAGTAGCTTCAGAGATGTATCTTTTTTTATAATWAGGTGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAATCTCCTATTTTCGAAATTTCGGAATCATTCCATTTTCCCATCACAAAAATGTCGAAAATTAAGAAAAATTGACAAAAAAATTTCGAAAACGCAAAACAAGGTTAAAAGTTAGTCCGCTCAAGACCTGCAAGCAAATTTTGCGCATGCGCCTTCGACATACCGTAGTCCGAAAATCTTCAATGCCGAAACAAAGCTTCAAAAATGTTTCCGTCAAAATTTTTTCGGAATTCCGATATCTGTTTTTAACATCTCTATTTCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18965</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>325386</contig_pos>
        <strand>+</strand>
        <context>CTATTTCTCC[G/T]AGTAAGGTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAAAATTTTTTCGGAATTCCGATATCTGTTTTTAACATCTCTATTTCTCC</left_flank>
        <right_flank>AGTAAGGTATGTTCTAAGTTTCAGTAAACACTCAAATATATTCAAATTTC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTTTTTTTTGGTGTCGCTTCAAGAGAAAAAAGGAAATAAAACATCCCCAGAATTGGCTTTTCCAACGTTTTGAAAGAAAGGGAACCCCTAACAACGGAGCACTAGATTCAATATGTTTTTGGGGTACTTTTTGAAACTTCTTGCAAAGTTATAAAGTAGCTTCAGAGATGTATCTTTTTTTATAATAAGGTGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAATCTCCTATTTTCGAAATTTCGGAATCATTCCATTTTCCCATCACAAAAATGTCGAAAATTAAGAAAAATTGACAAAAAAATTTCGAAAACGCAAAACAAGGTTAAAAGTTAGTCCGCTCAAGACCTGCAAGCAAATTTTGCGCATGCGCCTTCGACATACCGTAGTCCGAAAATCTTCAATGCCGAAACAAAGCTTCAAAAATGTTTCCGTCAAAATTTTTTCGGAATTCCGATATCTGTTTTTAACATCTCTATTTCTCCGAGTAAGGTATGTTCTAAGTTTCAGTAAACACTCAAATATATTCAAATTTCAAAATCGAAAGTGTCATTCAATGTTTGGTGTCATTCCTTATTGTCACGCGACGCAACGTTTAGTGCGTCACCTTTATTATCGATAAGTTCACCAAAATACTTCATGAGCTCACCTCATCTGGCCGTGGAATATTTAGAGGGAACATTTTGGTATGTTCTTCTGAAATCTATTAGGATATGTGTATGACGAATAGAATGATGACAACAGTCACAAGCTTCTTAGAACTTAACAAATCACCTTTTTTATTGACCGTGAGCTTTTGACGTCATTCAGTAAGTCTCACTAATTGGGAGATGTGCGGTTTCTGAGTGTCCGACTATAGTATGAATAATGTCACCGTCTACCTGAAGAAGTGAAAAGATAAATGTTATTCAGTTTGAGAGAAATGAGAAGAATCTAATTGCTCCGGCAACTCGTGGTGTTGAATTTAGTCCGTTGGGGTAAGTCAC</canonical>
            <polymorphic>TCTTTTTTTTTGGTGTCGCTTCAAGAGAAAAAAGGAAATAAAACATCCCCAGAATTGGCTTTTCCAACGTTTTGAAAGAAAGGGAACCCCTAACAACGGAGCACTAGATTCAATATGTTTTTGGGGTACTTTTTGAAACTTCTTGCAAAGTTATAAAGTAGCTTCAGAGATGTATCTTTTTTTATAATAAGGTGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAATCTCCTATTTTCGAAATTTCGGAATCATTCCATTTTCCCATCACAAAAATGTCGAAAATTAAGAAAAATTGACAAAAAAATTTCGAAAACGCAAAACAAGGTTAAAAGTTAGTCCGCTCAAGACCTGCAAGCAAATTTTGCGCATGCGCCTTCGACATACCGTAGTCCGAAAATCTTCAATGCCGAAACAAAGCTTCAAAAATGTTTCCGTCAAAATTTTTTCGGAATTCCGATATCTGTTTTTAACATCTCTATTTCTCCKAGTAAGGTATGTTCTAAGTTTCAGTAAACACTCAAATATATTCAAATTTCAAAATCGAAAGTGTCATTCAATGTTTGGTGTCATTCCTTATTGTCACGCGACGCAACGTTTAGTGCGTCACCTTTATTATCGATAAGTTCACCAAAATACTTCATGAGCTCACCTCATCTGGCCGTGGAATATTTAGAGGGAACATTTTGGTATGTTCTTCTGAAATCTATTAGGATATGTGTATGACGAATAGAATGATGACAACAGTCACAAGCTTCTTAGAACTTAACAAATCACCTTTTTTATTGACCGTGAGCTTTTGACGTCATTCAGTAAGTCTCACTAATTGGGAGATGTGCGGTTTCTGAGTGTCCGACTATAGTATGAATAATGTCACCGTCTACCTGAAGAAGTGAAAAGATAAATGTTATTCAGTTTGAGAGAAATGAGAAGAATCTAATTGCTCCGGCAACTCGTGGTGTTGAATTTAGTCCGTTGGGGTAAGTCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>213 166 147 145 135 93 56 30 8 7</canonical_bands>
                <polymorphic_bands>243 166 147 145 135 93 56 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAACTTCTTGCAAAGTTATAAAGTA</pcr_primer_p1>
		<pcr_primer_p2>GAATGACACTTTCGATTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>435</pcr_amplicon_size>
		<canonical_amplicon>GAAACTTCTTGCAAAGTTATAAAGTAGCTTCAGAGATGTATCTTTTTTTATAATAAGGTGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAATCTCCTATTTTCGAAATTTCGGAATCATTCCATTTTCCCATCACAAAAATGTCGAAAATTAAGAAAAATTGACAAAAAAATTTCGAAAACGCAAAACAAGGTTAAAAGTTAGTCCGCTCAAGACCTGCAAGCAAATTTTGCGCATGCGCCTTCGACATACCGTAGTCCGAAAATCTTCAATGCCGAAACAAAGCTTCAAAAATGTTTCCGTCAAAATTTTTTCGGAATTCCGATATCTGTTTTTAACATCTCTATTTCTCCGAGTAAGGTATGTTCTAAGTTTCAGTAAACACTCAAATATATTCAAATTTCAAAATCGAAAGTGTCATTC</canonical_amplicon>
		<polymorphic_amplicon>GAAACTTCTTGCAAAGTTATAAAGTAGCTTCAGAGATGTATCTTTTTTTATAATAAGGTGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAATCTCCTATTTTCGAAATTTCGGAATCATTCCATTTTCCCATCACAAAAATGTCGAAAATTAAGAAAAATTGACAAAAAAATTTCGAAAACGCAAAACAAGGTTAAAAGTTAGTCCGCTCAAGACCTGCAAGCAAATTTTGCGCATGCGCCTTCGACATACCGTAGTCCGAAAATCTTCAATGCCGAAACAAAGCTTCAAAAATGTTTCCGTCAAAATTTTTTCGGAATTCCGATATCTGTTTTTAACATCTCTATTTCTCCKAGTAAGGTATGTTCTAAGTTTCAGTAAACACTCAAATATATTCAAATTTCAAAATCGAAAGTGTCATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18966</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>325564</contig_pos>
        <strand>+</strand>
        <context>TCTGGCCGTG[G/T]AATATTTAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATCGATAAGTTCACCAAAATACTTCATGAGCTCACCTCATCTGGCCGTG</left_flank>
        <right_flank>AATATTTAGAGGGAACATTTTGGTATGTTCTTCTGAAATCTATTAGGATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTATAATAAGGTGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAATCTCCTATTTTCGAAATTTCGGAATCATTCCATTTTCCCATCACAAAAATGTCGAAAATTAAGAAAAATTGACAAAAAAATTTCGAAAACGCAAAACAAGGTTAAAAGTTAGTCCGCTCAAGACCTGCAAGCAAATTTTGCGCATGCGCCTTCGACATACCGTAGTCCGAAAATCTTCAATGCCGAAACAAAGCTTCAAAAATGTTTCCGTCAAAATTTTTTCGGAATTCCGATATCTGTTTTTAACATCTCTATTTCTCCGAGTAAGGTATGTTCTAAGTTTCAGTAAACACTCAAATATATTCAAATTTCAAAATCGAAAGTGTCATTCAATGTTTGGTGTCATTCCTTATTGTCACGCGACGCAACGTTTAGTGCGTCACCTTTATTATCGATAAGTTCACCAAAATACTTCATGAGCTCACCTCATCTGGCCGTGGAATATTTAGAGGGAACATTTTGGTATGTTCTTCTGAAATCTATTAGGATATGTGTATGACGAATAGAATGATGACAACAGTCACAAGCTTCTTAGAACTTAACAAATCACCTTTTTTATTGACCGTGAGCTTTTGACGTCATTCAGTAAGTCTCACTAATTGGGAGATGTGCGGTTTCTGAGTGTCCGACTATAGTATGAATAATGTCACCGTCTACCTGAAGAAGTGAAAAGATAAATGTTATTCAGTTTGAGAGAAATGAGAAGAATCTAATTGCTCCGGCAACTCGTGGTGTTGAATTTAGTCCGTTGGGGTAAGTCACTTGACTCCTCATACTAGAGAGTATTTTGAAATTTGTTGTTGTACTGAGAAGAGACATCTAGCAAAAAATCTTGTTATTTGGTGTATCCGCTGCTTCGCTACAGTAACCCTTGTTTTTTAAGATTAAAAAAATAGGCTCCAAGCTAATTTTTTTCATGCCTTCCAAAAGTCAACAATTT</canonical>
            <polymorphic>TTTTTATAATAAGGTGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAATCTCCTATTTTCGAAATTTCGGAATCATTCCATTTTCCCATCACAAAAATGTCGAAAATTAAGAAAAATTGACAAAAAAATTTCGAAAACGCAAAACAAGGTTAAAAGTTAGTCCGCTCAAGACCTGCAAGCAAATTTTGCGCATGCGCCTTCGACATACCGTAGTCCGAAAATCTTCAATGCCGAAACAAAGCTTCAAAAATGTTTCCGTCAAAATTTTTTCGGAATTCCGATATCTGTTTTTAACATCTCTATTTCTCCGAGTAAGGTATGTTCTAAGTTTCAGTAAACACTCAAATATATTCAAATTTCAAAATCGAAAGTGTCATTCAATGTTTGGTGTCATTCCTTATTGTCACGCGACGCAACGTTTAGTGCGTCACCTTTATTATCGATAAGTTCACCAAAATACTTCATGAGCTCACCTCATCTGGCCGTGKAATATTTAGAGGGAACATTTTGGTATGTTCTTCTGAAATCTATTAGGATATGTGTATGACGAATAGAATGATGACAACAGTCACAAGCTTCTTAGAACTTAACAAATCACCTTTTTTATTGACCGTGAGCTTTTGACGTCATTCAGTAAGTCTCACTAATTGGGAGATGTGCGGTTTCTGAGTGTCCGACTATAGTATGAATAATGTCACCGTCTACCTGAAGAAGTGAAAAGATAAATGTTATTCAGTTTGAGAGAAATGAGAAGAATCTAATTGCTCCGGCAACTCGTGGTGTTGAATTTAGTCCGTTGGGGTAAGTCACTTGACTCCTCATACTAGAGAGTATTTTGAAATTTGTTGTTGTACTGAGAAGAGACATCTAGCAAAAAATCTTGTTATTTGGTGTATCCGCTGCTTCGCTACAGTAACCCTTGTTTTTTAAGATTAAAAAAATAGGCTCCAAGCTAATTTTTTTCATGCCTTCCAAAAGTCAACAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAGTGCGTCACCTTTATTATC</pcr_primer_p1>
		<pcr_primer_p2>CATCTCCCAATTAGTGAGACTTA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TTTAGTGCGTCACCTTTATTATCGATAAGTTCACCAAAATACTTCATGAGCTCACCTCATCTGGCCGTGGAATATTTAGAGGGAACATTTTGGTATGTTCTTCTGAAATCTATTAGGATATGTGTATGACGAATAGAATGATGACAACAGTCACAAGCTTCTTAGAACTTAACAAATCACCTTTTTTATTGACCGTGAGCTTTTGACGTCATTCAGTAAGTCTCACTAATTGGGAGATG</canonical_amplicon>
		<polymorphic_amplicon>TTTAGTGCGTCACCTTTATTATCGATAAGTTCACCAAAATACTTCATGAGCTCACCTCATCTGGCCGTGKAATATTTAGAGGGAACATTTTGGTATGTTCTTCTGAAATCTATTAGGATATGTGTATGACGAATAGAATGATGACAACAGTCACAAGCTTCTTAGAACTTAACAAATCACCTTTTTTATTGACCGTGAGCTTTTGACGTCATTCAGTAAGTCTCACTAATTGGGAGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18968</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>338950</contig_pos>
        <strand></strand>
        <context>tctatcagag[C/T]gtttacgatA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCGATATTTGAGAGTTAAGGTTGACGGCTCGGGTGGCCTTCTATCAGAG</left_flank>
        <right_flank>GTTTACGATATATTCATTCTTAATTTTTCTAATAAGCTAAACAGAATTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACACGACGAGGCTCGAGCTGGAACCGGCGACATGTCTGAATGGGATACCAACTTCTTTATGGTGAGACACAGTGTGCTGTTCGAAATCATCAGGGCCGCTAGGGACTACGATATTCCTGGGCTGTTCGCCATGTGCTGCCAAATCGTTGGGCAGAATCCAGAGGTGGTTATGGCTGGATTGTTGGATGATGACGATGACGATGCTGTTGGTGGAGTTTTCCGCATGCGAGTTCAACAAAATGCTCCAGCTGCCTAAGCTGCTTTTTTAAAGAATAATCGCCAACATTTCTTTTACCATAAACACTCTAATATAAGGCCGCCAACTTTGACCAACCTTGAACTCTCGGTTCCTGTAAGAGATATGAAAAAGTGATCAACTGACAAAATGTTTGTCTTAATATCAGTTAAATTTTGTCAGTTGACTACTTTCAGGCATTTTTACAAGAACAGCGATATTTGAGAGTTAAGGTTGACGGCTCGGGTGGCCTTCTATCAGAGCGTTTACGATATATTCATTCTTAATTTTTCTAATAAGCTAAACAGAATTTTTTGTTTCTTTTTTTCCAATCATTCCATAGTGCTAGTCACGTTTATTTTTGTAAAACAAATTTTTATTGCATTTCTCCCATCCCTGTTTCAATTTTCGTGTAGATTTTGTACCATAGTTATCTTCTAAAGCCATTCAGTTTCTTTTCAATGATTCCAGTGCTATTTTTTCCTGTCATTCCTTTTCATTCAATTTTTTCCCGTGTCTACTTATTTCTTTGAAGAATAAAGGGTCACATGTTATCGATTTTTTCTCATATAACTTTTTTTTTGGCGAAAACGGTTTGATTCCGATTGCTATTACTTTTTCCCATTATTTTAATGGCGAGAACTTTGGGATTTTTTCAATAAAAAGTTTAAATTTTTCAGTCAAAATGCCTACGGCGCTGTACAAACTCAAGTCGGAAGATGGACAAATTTTCGAGGTCGAGCGAGCGCCGATGATTGTTTCCT</canonical>
            <polymorphic>CACACGACGAGGCTCGAGCTGGAACCGGCGACATGTCTGAATGGGATACCAACTTCTTTATGGTGAGACACAGTGTGCTGTTCGAAATCATCAGGGCCGCTAGGGACTACGATATTCCTGGGCTGTTCGCCATGTGCTGCCAAATCGTTGGGCAGAATCCAGAGGTGGTTATGGCTGGATTGTTGGATGATGACGATGACGATGCTGTTGGTGGAGTTTTCCGCATGCGAGTTCAACAAAATGCTCCAGCTGCCTAAGCTGCTTTTTTAAAGAATAATCGCCAACATTTCTTTTACCATAAACACTCTAATATAAGGCCGCCAACTTTGACCAACCTTGAACTCTCGGTTCCTGTAAGAGATATGAAAAAGTGATCAACTGACAAAATGTTTGTCTTAATATCAGTTAAATTTTGTCAGTTGACTACTTTCAGGCATTTTTACAAGAACAGCGATATTTGAGAGTTAAGGTTGACGGCTCGGGTGGCCTTCTATCAGAGYGTTTACGATATATTCATTCTTAATTTTTCTAATAAGCTAAACAGAATTTTTTGTTTCTTTTTTTCCAATCATTCCATAGTGCTAGTCACGTTTATTTTTGTAAAACAAATTTTTATTGCATTTCTCCCATCCCTGTTTCAATTTTCGTGTAGATTTTGTACCATAGTTATCTTCTAAAGCCATTCAGTTTCTTTTCAATGATTCCAGTGCTATTTTTTCCTGTCATTCCTTTTCATTCAATTTTTTCCCGTGTCTACTTATTTCTTTGAAGAATAAAGGGTCACATGTTATCGATTTTTTCTCATATAACTTTTTTTTTGGCGAAAACGGTTTGATTCCGATTGCTATTACTTTTTCCCATTATTTTAATGGCGAGAACTTTGGGATTTTTTCAATAAAAAGTTTAAATTTTTCAGTCAAAATGCCTACGGCGCTGTACAAACTCAAGTCGGAAGATGGACAAATTTTCGAGGTCGAGCGAGCGCCGATGATTGTTTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAATCGCCAACATTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>CACTATGGAATGATTGGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>AATAATCGCCAACATTTCTTTTACCATAAACACTCTAATATAAGGCCGCCAACTTTGACCAACCTTGAACTCTCGGTTCCTGTAAGAGATATGAAAAAGTGATCAACTGACAAAATGTTTGTCTTAATATCAGTTAAATTTTGTCAGTTGACTACTTTCAGGCATTTTTACAAGAACAGCGATATTTGAGAGTTAAGGTTGACGGCTCGGGTGGCCTTCTATCAGAGCGTTTACGATATATTCATTCTTAATTTTTCTAATAAGCTAAACAGAATTTTTTGTTTCTTTTTTTCCAATCATTCCATAGTG</canonical_amplicon>
		<polymorphic_amplicon>AATAATCGCCAACATTTCTTTTACCATAAACACTCTAATATAAGGCCGCCAACTTTGACCAACCTTGAACTCTCGGTTCCTGTAAGAGATATGAAAAAGTGATCAACTGACAAAATGTTTGTCTTAATATCAGTTAAATTTTGTCAGTTGACTACTTTCAGGCATTTTTACAAGAACAGCGATATTTGAGAGTTAAGGTTGACGGCTCGGGTGGCCTTCTATCAGAGYGTTTACGATATATTCATTCTTAATTTTTCTAATAAGCTAAACAGAATTTTTTGTTTCTTTTTTTCCAATCATTCCATAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18969</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>357615</contig_pos>
        <strand>+</strand>
        <context>GAAGGAGCTG[C/T]AAAAATACTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACCTCGAGGTGTCAGTTTTCATAAGTTTGGCTGCAGTAAGAAGGAGCTG</left_flank>
        <right_flank>AAAAATACTCTGACAAGTTTATGGTACTCTCTCAAAGTTCCAAAGCTCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCAAATCCATTCAAAACCAAAAAGCTACTCCACAACGAGTTCTCGAAAATTTCACCCAAAAATTGAACATTTTGACGAGTGTCTATCAAAATATTAGTGGGACTTCCCACTCTCCCACTCTCTTCGCTCTCTATTTTATTGAGATTTTGTCCCGTTTTTCTTCACTCCGTTTTTTTTTCTTCTTTGTTTCTTCCATTTTTCTTCCATTTTCTTTTGTTCTCAACGGAACTGAATGGAAGCTCAGAGAGCTCCAACTTTCATCAGATCCGGCGACTGACGCACCCGTCGCCGGGACGGGTGAAAGATTAGAAAACAGCAGCAACAAGATAACAGAAAATACGTCAGGATGAATGGGATAGAAAGTGGGAAGAAAAAAAGAAGGAAGCAGTTTGTGTACTTTTTATAACACCTTTTAGTGAGAAGGAGTAAGAAGAGATGTGAAGGAAAAACCTCGAGGTGTCAGTTTTCATAAGTTTGGCTGCAGTAAGAAGGAGCTGCAAAAATACTCTGACAAGTTTATGGTACTCTCTCAAAGTTCCAAAGCTCAATAAATCCATAAAAGAGAGCTTGTTGCTTAATAGTCCTTGTCCTCTTCCTCTTCTTCCCTAACTTTGTCCTGTGGGTCCTTGAGAAACAATTCATCATGCTATTGTGGGGTCCGTTGGAATGCAATGTAGGTCGCATATCTCCTTTGGGAATGAAGATCATTCCACAGCCAATATGCGTGTCGTCTTGAGTTTTTCGGGCAAGGAGAGGACTTCAGTAGGACGAAGACATAAGAAGCAAATAAAAAAGGAAGAATGAAAAAGGAGGAGCAGTAAAAAAGACAAAAAAATAAAATTGTTCAACACTTTTTCTTGTTGCTCAAGCAAAAAGTGACGTACCATACTTGCCATACTTTTTTGCGCATTTTTCATTTTTTCTTCTCTCTCTTTTCTTTATACTAGCGGCTCAGTTTTCGGAAAACGGAGAAGTTCTGACTAATGGGGACGGACTAC</canonical>
            <polymorphic>ACTCAAATCCATTCAAAACCAAAAAGCTACTCCACAACGAGTTCTCGAAAATTTCACCCAAAAATTGAACATTTTGACGAGTGTCTATCAAAATATTAGTGGGACTTCCCACTCTCCCACTCTCTTCGCTCTCTATTTTATTGAGATTTTGTCCCGTTTTTCTTCACTCCGTTTTTTTTTCTTCTTTGTTTCTTCCATTTTTCTTCCATTTTCTTTTGTTCTCAACGGAACTGAATGGAAGCTCAGAGAGCTCCAACTTTCATCAGATCCGGCGACTGACGCACCCGTCGCCGGGACGGGTGAAAGATTAGAAAACAGCAGCAACAAGATAACAGAAAATACGTCAGGATGAATGGGATAGAAAGTGGGAAGAAAAAAAGAAGGAAGCAGTTTGTGTACTTTTTATAACACCTTTTAGTGAGAAGGAGTAAGAAGAGATGTGAAGGAAAAACCTCGAGGTGTCAGTTTTCATAAGTTTGGCTGCAGTAAGAAGGAGCTGYAAAAATACTCTGACAAGTTTATGGTACTCTCTCAAAGTTCCAAAGCTCAATAAATCCATAAAAGAGAGCTTGTTGCTTAATAGTCCTTGTCCTCTTCCTCTTCTTCCCTAACTTTGTCCTGTGGGTCCTTGAGAAACAATTCATCATGCTATTGTGGGGTCCGTTGGAATGCAATGTAGGTCGCATATCTCCTTTGGGAATGAAGATCATTCCACAGCCAATATGCGTGTCGTCTTGAGTTTTTCGGGCAAGGAGAGGACTTCAGTAGGACGAAGACATAAGAAGCAAATAAAAAAGGAAGAATGAAAAAGGAGGAGCAGTAAAAAAGACAAAAAAATAAAATTGTTCAACACTTTTTCTTGTTGCTCAAGCAAAAAGTGACGTACCATACTTGCCATACTTTTTTGCGCATTTTTCATTTTTTCTTCTCTCTCTTTTCTTTATACTAGCGGCTCAGTTTTCGGAAAACGGAGAAGTTCTGACTAATGGGGACGGACTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>453 321 162 48 16</canonical_bands>
                <polymorphic_bands>469 321 162 48</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>483 329 172 16</canonical_bands>
                <polymorphic_bands>483 329 188</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>504 318 162 16</canonical_bands>
                <polymorphic_bands>520 318 162</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATAACAGAAAATACGTCAGGAT</pcr_primer_p1>
		<pcr_primer_p2>AACAAGCTCTCTTTTATGGATTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGATAACAGAAAATACGTCAGGATGAATGGGATAGAAAGTGGGAAGAAAAAAAGAAGGAAGCAGTTTGTGTACTTTTTATAACACCTTTTAGTGAGAAGGAGTAAGAAGAGATGTGAAGGAAAAACCTCGAGGTGTCAGTTTTCATAAGTTTGGCTGCAGTAAGAAGGAGCTGCAAAAATACTCTGACAAGTTTATGGTACTCTCTCAAAGTTCCAAAGCTCAATAAATCCATAAAAGAGAGCTTGTT</canonical_amplicon>
		<polymorphic_amplicon>AGATAACAGAAAATACGTCAGGATGAATGGGATAGAAAGTGGGAAGAAAAAAAGAAGGAAGCAGTTTGTGTACTTTTTATAACACCTTTTAGTGAGAAGGAGTAAGAAGAGATGTGAAGGAAAAACCTCGAGGTGTCAGTTTTCATAAGTTTGGCTGCAGTAAGAAGGAGCTGYAAAAATACTCTGACAAGTTTATGGTACTCTCTCAAAGTTCCAAAGCTCAATAAATCCATAAAAGAGAGCTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18970</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>357894</contig_pos>
        <strand>+</strand>
        <context>GACGAAGACA[C/T]AAGAAGCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCGTCTTGAGTTTTTCGGGCAAGGAGAGGACTTCAGTAGGACGAAGACA</left_flank>
        <right_flank>AAGAAGCAAATAAAAAAGGAAGAATGAAAAAGGAGGAGCAGTAAAAAAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCACCCGTCGCCGGGACGGGTGAAAGATTAGAAAACAGCAGCAACAAGATAACAGAAAATACGTCAGGATGAATGGGATAGAAAGTGGGAAGAAAAAAAGAAGGAAGCAGTTTGTGTACTTTTTATAACACCTTTTAGTGAGAAGGAGTAAGAAGAGATGTGAAGGAAAAACCTCGAGGTGTCAGTTTTCATAAGTTTGGCTGCAGTAAGAAGGAGCTGCAAAAATACTCTGACAAGTTTATGGTACTCTCTCAAAGTTCCAAAGCTCAATAAATCCATAAAAGAGAGCTTGTTGCTTAATAGTCCTTGTCCTCTTCCTCTTCTTCCCTAACTTTGTCCTGTGGGTCCTTGAGAAACAATTCATCATGCTATTGTGGGGTCCGTTGGAATGCAATGTAGGTCGCATATCTCCTTTGGGAATGAAGATCATTCCACAGCCAATATGCGTGTCGTCTTGAGTTTTTCGGGCAAGGAGAGGACTTCAGTAGGACGAAGACATAAGAAGCAAATAAAAAAGGAAGAATGAAAAAGGAGGAGCAGTAAAAAAGACAAAAAAATAAAATTGTTCAACACTTTTTCTTGTTGCTCAAGCAAAAAGTGACGTACCATACTTGCCATACTTTTTTGCGCATTTTTCATTTTTTCTTCTCTCTCTTTTCTTTATACTAGCGGCTCAGTTTTCGGAAAACGGAGAAGTTCTGACTAATGGGGACGGACTACAAATCCAGAAAATACTGTTAGAGTACAAGTTTTCCGCTGAAAACCTAATCCGATTAGCTTAAAACACAGAAATTGGAGGAATGAGAAAACGAAATCGAATGAAAAAGGAGAGAAGCATGTAATCGGAGACAAGACGAGTTGGAAGGGAAAGTTCTGAGACATTGCTCTTGGGTGAGTAAGCGGCAACTGGAGAGTCCCCTTTTCTGCTTGTTATGTGTGCCAAAACAGGAAGTATCATTATCCTCGGCTCTTGAGTATCTTTTGATTGGTGAGTTGTTG</canonical>
            <polymorphic>CGCACCCGTCGCCGGGACGGGTGAAAGATTAGAAAACAGCAGCAACAAGATAACAGAAAATACGTCAGGATGAATGGGATAGAAAGTGGGAAGAAAAAAAGAAGGAAGCAGTTTGTGTACTTTTTATAACACCTTTTAGTGAGAAGGAGTAAGAAGAGATGTGAAGGAAAAACCTCGAGGTGTCAGTTTTCATAAGTTTGGCTGCAGTAAGAAGGAGCTGCAAAAATACTCTGACAAGTTTATGGTACTCTCTCAAAGTTCCAAAGCTCAATAAATCCATAAAAGAGAGCTTGTTGCTTAATAGTCCTTGTCCTCTTCCTCTTCTTCCCTAACTTTGTCCTGTGGGTCCTTGAGAAACAATTCATCATGCTATTGTGGGGTCCGTTGGAATGCAATGTAGGTCGCATATCTCCTTTGGGAATGAAGATCATTCCACAGCCAATATGCGTGTCGTCTTGAGTTTTTCGGGCAAGGAGAGGACTTCAGTAGGACGAAGACAYAAGAAGCAAATAAAAAAGGAAGAATGAAAAAGGAGGAGCAGTAAAAAAGACAAAAAAATAAAATTGTTCAACACTTTTTCTTGTTGCTCAAGCAAAAAGTGACGTACCATACTTGCCATACTTTTTTGCGCATTTTTCATTTTTTCTTCTCTCTCTTTTCTTTATACTAGCGGCTCAGTTTTCGGAAAACGGAGAAGTTCTGACTAATGGGGACGGACTACAAATCCAGAAAATACTGTTAGAGTACAAGTTTTCCGCTGAAAACCTAATCCGATTAGCTTAAAACACAGAAATTGGAGGAATGAGAAAACGAAATCGAATGAAAAAGGAGAGAAGCATGTAATCGGAGACAAGACGAGTTGGAAGGGAAAGTTCTGAGACATTGCTCTTGGGTGAGTAAGCGGCAACTGGAGAGTCCCCTTTTCTGCTTGTTATGTGTGCCAAAACAGGAAGTATCATTATCCTCGGCTCTTGAGTATCTTTTGATTGGTGAGTTGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCATTCCACAGCCAATATG</pcr_primer_p1>
		<pcr_primer_p2>AGCCGCTAGTATAAAGAAAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCATTCCACAGCCAATATGCGTGTCGTCTTGAGTTTTTCGGGCAAGGAGAGGACTTCAGTAGGACGAAGACATAAGAAGCAAATAAAAAAGGAAGAATGAAAAAGGAGGAGCAGTAAAAAAGACAAAAAAATAAAATTGTTCAACACTTTTTCTTGTTGCTCAAGCAAAAAGTGACGTACCATACTTGCCATACTTTTTTGCGCATTTTTCATTTTTTCTTCTCTCTCTTTTCTTTATACTAGCGGCT</canonical_amplicon>
		<polymorphic_amplicon>ATCATTCCACAGCCAATATGCGTGTCGTCTTGAGTTTTTCGGGCAAGGAGAGGACTTCAGTAGGACGAAGACAYAAGAAGCAAATAAAAAAGGAAGAATGAAAAAGGAGGAGCAGTAAAAAAGACAAAAAAATAAAATTGTTCAACACTTTTTCTTGTTGCTCAAGCAAAAAGTGACGTACCATACTTGCCATACTTTTTTGCGCATTTTTCATTTTTTCTTCTCTCTCTTTTCTTTATACTAGCGGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb18971</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>360785</contig_pos>
        <strand>+</strand>
        <context>ACATTCCAGG[C/G]AAATCATATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TACTGTAATTCAAGCTCCAGTTATTGACATCTTTCTAGTCACATTCCAGG</left_flank>
        <right_flank>AAATCATATTTTAAATCGTTGAAAAATTCAGTAATCGGTGGTTTCATGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTAAATGTCAATAAATATACAAAAACGTTTTTTTTTACAGTTGATTTTTGGTAATTTGCAGGTCTCTGAAGCCCGACTCTCAAGTTTCCGATCACTTTCAAGTTTCTGGAAAGGGTAAAACAGATCTGGAGTGGAAACTTTCCAATCACAGAATTTTTCGAATAATCCTAGTTTTTCAGCTGTTTGCCGATTTTTGAAAGACATCTCCATATAAACCAGTTTTGTACTAAAAACGTGAAAAATCAGGTGTTTTTCATAAATTGGTGCGTAATTAAAAAACTTGTAATTTTCAAAAAACTCTGTGAATGTTTCCAATCTAGAGCTGTTTCACACTTTTCAGAACTTTCAAAGAAATCAGAAGCTCGACAATCGAACTCTAGACTCCTGAAAATGGTCAAAATAGCCAAAACTGAAAAATTCGTTTTTCTATTTTTTTTTATTGACTGGTACTGTAATTCAAGCTCCAGTTATTGACATCTTTCTAGTCACATTCCAGGCAAATCATATTTTAAATCGTTGAAAAATTCAGTAATCGGTGGTTTCATGAAAATTTATTTCATTTAACTGATGGAAGTTTGGATAAAATTAGCTTGCTTAGCTTATCCGGATCCCAGCACAGTAAAAACTTAAGGACAAATTATAATACGCGCAAATCATCAATCTTTCGAAGTAAGAAATCGCAATGAGAAAGTTTAAATGAGAATTTTTCGGACTTCCCACTGAAAAATATTCAATATTATCTCACTGACTCTAAATCAAGTCCGTCTCGCAAAGATGCGAGTGCCAGTTCTCTAAAAAAATAGATGGGAAAAAGATTTATGAAGAGAATAGATCAACGGATCAAAAAGGAGAAAGGAGAGATGAAGCCAAAAGGGCATATTTTTCCGAGCCCCGCCAGTCACGCCCCTCCTCTTTGAAGACCCCTCTGGGCATACGTTAATTTGGGAGAGTAGTGAGAAACCCTAACGATATCTGAACTATTATTTTCGAGTAGTTGG</canonical>
            <polymorphic>CAGTAAATGTCAATAAATATACAAAAACGTTTTTTTTTACAGTTGATTTTTGGTAATTTGCAGGTCTCTGAAGCCCGACTCTCAAGTTTCCGATCACTTTCAAGTTTCTGGAAAGGGTAAAACAGATCTGGAGTGGAAACTTTCCAATCACAGAATTTTTCGAATAATCCTAGTTTTTCAGCTGTTTGCCGATTTTTGAAAGACATCTCCATATAAACCAGTTTTGTACTAAAAACGTGAAAAATCAGGTGTTTTTCATAAATTGGTGCGTAATTAAAAAACTTGTAATTTTCAAAAAACTCTGTGAATGTTTCCAATCTAGAGCTGTTTCACACTTTTCAGAACTTTCAAAGAAATCAGAAGCTCGACAATCGAACTCTAGACTCCTGAAAATGGTCAAAATAGCCAAAACTGAAAAATTCGTTTTTCTATTTTTTTTTATTGACTGGTACTGTAATTCAAGCTCCAGTTATTGACATCTTTCTAGTCACATTCCAGGSAAATCATATTTTAAATCGTTGAAAAATTCAGTAATCGGTGGTTTCATGAAAATTTATTTCATTTAACTGATGGAAGTTTGGATAAAATTAGCTTGCTTAGCTTATCCGGATCCCAGCACAGTAAAAACTTAAGGACAAATTATAATACGCGCAAATCATCAATCTTTCGAAGTAAGAAATCGCAATGAGAAAGTTTAAATGAGAATTTTTCGGACTTCCCACTGAAAAATATTCAATATTATCTCACTGACTCTAAATCAAGTCCGTCTCGCAAAGATGCGAGTGCCAGTTCTCTAAAAAAATAGATGGGAAAAAGATTTATGAAGAGAATAGATCAACGGATCAAAAAGGAGAAAGGAGAGATGAAGCCAAAAGGGCATATTTTTCCGAGCCCCGCCAGTCACGCCCCTCCTCTTTGAAGACCCCTCTGGGCATACGTTAATTTGGGAGAGTAGTGAGAAACCCTAACGATATCTGAACTATTATTTTCGAGTAGTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTCACTGATTAATTACTTGTTTG</pcr_primer_p1>
		<pcr_primer_p2>TATCCAAACTTCCATCAGTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>616</pcr_amplicon_size>
		<canonical_amplicon>GCAAATCATATTTTAAATCGTTGAAAAATTCAGTAATCGGTGGTTTCATGAAAATTTATTTCATTTAACTGATGGAAGTTTGGATA</canonical_amplicon>
		<polymorphic_amplicon>GSAAATCATATTTTAAATCGTTGAAAAATTCAGTAATCGGTGGTTTCATGAAAATTTATTTCATTTAACTGATGGAAGTTTGGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19005</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>383119</contig_pos>
        <strand>+</strand>
        <context>ACCGATCAAA[C/T]CGACGAGCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTGCCTGAGAAACCAGCTACTAAGGATGTTGCCACAATGACCGATCAAA</left_flank>
        <right_flank>CGACGAGCTGCCTGCATTCCTTCCAGTTCCTGTTAACGCTCCAGTCATGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTTTCTAATCAAAAACGGGGAAAAAAAGAGAACTCGCATTGATTTTTTAAAAAAAATTTCAAATTGATTTTCGAACTCCAGGATTTTCTAATTGCAAAAAAAGTTAGTTTTAAATTACGGTCGGATTTTTTTGAATTTTCGAAATGCGAAGTTCCCTTCCGAACATCCCTCATAAATTATATCTCTTTTCTGCCTCCTACGCGATCCAATTCTTCCAAATCGTCCAATCGTCGCACCAGTCCCTCTACCATTGCCAAGCAAAAAAGTAGACTATGATGTCGAGAAATCGGATGCTGTTATTCTTCCACCTCCAGCTATCCAACCAGAACCAGGTGATCATTTTACGATAATTTTTTTTATTATTTAAAAAATATTTTTAGTTTACATCACAGTGCCAGAAAAGCACGAATCTGTTTACGGATTCCACACCAAGGAAATTATCCACGTGTTGCCTGAGAAACCAGCTACTAAGGATGTTGCCACAATGACCGATCAAATCGACGAGCTGCCTGCATTCCTTCCAGTTCCTGTTAACGCTCCAGTCATGAAACGCAAGAAGGCAGTTAAGAAACCAAAGAAGATGTTCATCCCAGCTACCGCTGATCCAATTGAGGAAGATGTCGCTGCTGAAATCCCAATCGATATTCCTGACAGCCCAGGAGCCCGTTCTGTTGCTCCACTTGGTGACGTTCCTGAGCCTGTTCCGATGGTCCCGTTGAATTTCTCTTGTAATCCGAAGCCAATTGTGCCAGAGCCAAAGCCACAAGATGGCATTCCGCCAATGCCAAGAACTAATCAGAACTCTCCCGGGGCGCCGGCTCATCAACGGAAGCCGCAATCTGATAACGAGGAATTTGATCCGTCCGGATTAAGGTTAGTGATAGAAATATATAGAATTATCTAGAAAAGAAACCCCTGTACTAGTAATGAACATTTGAAGATCACCACCAATTCCACCCGCAGGAAAATCAAATGCTAATGCTCCAAGAAGAATGACG</canonical>
            <polymorphic>AAGTTTCTAATCAAAAACGGGGAAAAAAAGAGAACTCGCATTGATTTTTTAAAAAAAATTTCAAATTGATTTTCGAACTCCAGGATTTTCTAATTGCAAAAAAAGTTAGTTTTAAATTACGGTCGGATTTTTTTGAATTTTCGAAATGCGAAGTTCCCTTCCGAACATCCCTCATAAATTATATCTCTTTTCTGCCTCCTACGCGATCCAATTCTTCCAAATCGTCCAATCGTCGCACCAGTCCCTCTACCATTGCCAAGCAAAAAAGTAGACTATGATGTCGAGAAATCGGATGCTGTTATTCTTCCACCTCCAGCTATCCAACCAGAACCAGGTGATCATTTTACGATAATTTTTTTTATTATTTAAAAAATATTTTTAGTTTACATCACAGTGCCAGAAAAGCACGAATCTGTTTACGGATTCCACACCAAGGAAATTATCCACGTGTTGCCTGAGAAACCAGCTACTAAGGATGTTGCCACAATGACCGATCAAAYCGACGAGCTGCCTGCATTCCTTCCAGTTCCTGTTAACGCTCCAGTCATGAAACGCAAGAAGGCAGTTAAGAAACCAAAGAAGATGTTCATCCCAGCTACCGCTGATCCAATTGAGGAAGATGTCGCTGCTGAAATCCCAATCGATATTCCTGACAGCCCAGGAGCCCGTTCTGTTGCTCCACTTGGTGACGTTCCTGAGCCTGTTCCGATGGTCCCGTTGAATTTCTCTTGTAATCCGAAGCCAATTGTGCCAGAGCCAAAGCCACAAGATGGCATTCCGCCAATGCCAAGAACTAATCAGAACTCTCCCGGGGCGCCGGCTCATCAACGGAAGCCGCAATCTGATAACGAGGAATTTGATCCGTCCGGATTAAGGTTAGTGATAGAAATATATAGAATTATCTAGAAAAGAAACCCCTGTACTAGTAATGAACATTTGAAGATCACCACCAATTCCACCCGCAGGAAAATCAAATGCTAATGCTCCAAGAAGAATGACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>358 219 141 140 74 68</canonical_bands>
                <polymorphic_bands>360 358 140 74 68</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAACCAGGTGATCATTTTAC</pcr_primer_p1>
		<pcr_primer_p2>GGTTTCTTAACTGCCTTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGAACCAGGTGATCATTTTACGATAATTTTTTTTATTATTTAAAAAATATTTTTAGTTTACATCACAGTGCCAGAAAAGCACGAATCTGTTTACGGATTCCACACCAAGGAAATTATCCACGTGTTGCCTGAGAAACCAGCTACTAAGGATGTTGCCACAATGACCGATCAAATCGACGAGCTGCCTGCATTCCTTCCAGTTCCTGTTAACGCTCCAGTCATGAAACGCAAGAAGGCAGTTAAGAAACC</canonical_amplicon>
		<polymorphic_amplicon>CAGAACCAGGTGATCATTTTACGATAATTTTTTTTATTATTTAAAAAATATTTTTAGTTTACATCACAGTGCCAGAAAAGCACGAATCTGTTTACGGATTCCACACCAAGGAAATTATCCACGTGTTGCCTGAGAAACCAGCTACTAAGGATGTTGCCACAATGACCGATCAAAYCGACGAGCTGCCTGCATTCCTTCCAGTTCCTGTTAACGCTCCAGTCATGAAACGCAAGAAGGCAGTTAAGAAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19006</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>383349</contig_pos>
        <strand>+</strand>
        <context>GAATTTCTCT[C/T]GTAATCCGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACTTGGTGACGTTCCTGAGCCTGTTCCGATGGTCCCGTTGAATTTCTCT</left_flank>
        <right_flank>GTAATCCGAAGCCAATTGTGCCAGAGCCAAAGCCACAAGATGGCATTCCG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTCGCACCAGTCCCTCTACCATTGCCAAGCAAAAAAGTAGACTATGATGTCGAGAAATCGGATGCTGTTATTCTTCCACCTCCAGCTATCCAACCAGAACCAGGTGATCATTTTACGATAATTTTTTTTATTATTTAAAAAATATTTTTAGTTTACATCACAGTGCCAGAAAAGCACGAATCTGTTTACGGATTCCACACCAAGGAAATTATCCACGTGTTGCCTGAGAAACCAGCTACTAAGGATGTTGCCACAATGACCGATCAAATCGACGAGCTGCCTGCATTCCTTCCAGTTCCTGTTAACGCTCCAGTCATGAAACGCAAGAAGGCAGTTAAGAAACCAAAGAAGATGTTCATCCCAGCTACCGCTGATCCAATTGAGGAAGATGTCGCTGCTGAAATCCCAATCGATATTCCTGACAGCCCAGGAGCCCGTTCTGTTGCTCCACTTGGTGACGTTCCTGAGCCTGTTCCGATGGTCCCGTTGAATTTCTCTTGTAATCCGAAGCCAATTGTGCCAGAGCCAAAGCCACAAGATGGCATTCCGCCAATGCCAAGAACTAATCAGAACTCTCCCGGGGCGCCGGCTCATCAACGGAAGCCGCAATCTGATAACGAGGAATTTGATCCGTCCGGATTAAGGTTAGTGATAGAAATATATAGAATTATCTAGAAAAGAAACCCCTGTACTAGTAATGAACATTTGAAGATCACCACCAATTCCACCCGCAGGAAAATCAAATGCTAATGCTCCAAGAAGAATGACGTGAGACTATCTTTAGGGATTCTGACATTCGGTTCCTCGTTTGCAGGTTCTCCCCAATTGCTGATGAGTCTGAAGAGGAAACCGGCGCTCGCATTCCGTCACCACCTCGTGAGCCAAGAGCATCATCTGGAGGAAGGTATTCAAAATTCTGACGGAGGCTCTTTGTAATTCGTCTGAATTATTTTACAGAAAAGGAAACGGCGAGAACAATGGATCCGGTGGTCTTCGCTC</canonical>
            <polymorphic>CGTCGCACCAGTCCCTCTACCATTGCCAAGCAAAAAAGTAGACTATGATGTCGAGAAATCGGATGCTGTTATTCTTCCACCTCCAGCTATCCAACCAGAACCAGGTGATCATTTTACGATAATTTTTTTTATTATTTAAAAAATATTTTTAGTTTACATCACAGTGCCAGAAAAGCACGAATCTGTTTACGGATTCCACACCAAGGAAATTATCCACGTGTTGCCTGAGAAACCAGCTACTAAGGATGTTGCCACAATGACCGATCAAATCGACGAGCTGCCTGCATTCCTTCCAGTTCCTGTTAACGCTCCAGTCATGAAACGCAAGAAGGCAGTTAAGAAACCAAAGAAGATGTTCATCCCAGCTACCGCTGATCCAATTGAGGAAGATGTCGCTGCTGAAATCCCAATCGATATTCCTGACAGCCCAGGAGCCCGTTCTGTTGCTCCACTTGGTGACGTTCCTGAGCCTGTTCCGATGGTCCCGTTGAATTTCTCTYGTAATCCGAAGCCAATTGTGCCAGAGCCAAAGCCACAAGATGGCATTCCGCCAATGCCAAGAACTAATCAGAACTCTCCCGGGGCGCCGGCTCATCAACGGAAGCCGCAATCTGATAACGAGGAATTTGATCCGTCCGGATTAAGGTTAGTGATAGAAATATATAGAATTATCTAGAAAAGAAACCCCTGTACTAGTAATGAACATTTGAAGATCACCACCAATTCCACCCGCAGGAAAATCAAATGCTAATGCTCCAAGAAGAATGACGTGAGACTATCTTTAGGGATTCTGACATTCGGTTCCTCGTTTGCAGGTTCTCCCCAATTGCTGATGAGTCTGAAGAGGAAACCGGCGCTCGCATTCCGTCACCACCTCGTGAGCCAAGAGCATCATCTGGAGGAAGGTATTCAAAATTCTGACGGAGGCTCTTTGTAATTCGTCTGAATTATTTTACAGAAAAGGAAACGGCGAGAACAATGGATCCGGTGGTCTTCGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTAAGAAACCAAAGAAGATG</pcr_primer_p1>
		<pcr_primer_p2>GGGAGAGTTCTGATTAGTTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGTTAAGAAACCAAAGAAGATGTTCATCCCAGCTACCGCTGATCCAATTGAGGAAGATGTCGCTGCTGAAATCCCAATCGATATTCCTGACAGCCCAGGAGCCCGTTCTGTTGCTCCACTTGGTGACGTTCCTGAGCCTGTTCCGATGGTCCCGTTGAATTTCTCTTGTAATCCGAAGCCAATTGTGCCAGAGCCAAAGCCACAAGATGGCATTCCGCCAATGCCAAGAACTAATCAGAACTCTCCC</canonical_amplicon>
		<polymorphic_amplicon>CAGTTAAGAAACCAAAGAAGATGTTCATCCCAGCTACCGCTGATCCAATTGAGGAAGATGTCGCTGCTGAAATCCCAATCGATATTCCTGACAGCCCAGGAGCCCGTTCTGTTGCTCCACTTGGTGACGTTCCTGAGCCTGTTCCGATGGTCCCGTTGAATTTCTCTYGTAATCCGAAGCCAATTGTGCCAGAGCCAAAGCCACAAGATGGCATTCCGCCAATGCCAAGAACTAATCAGAACTCTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19007</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>385797</contig_pos>
        <strand>+</strand>
        <context>ACATTCAAAT[G/T]TTTTCCGGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGAATGTTAAAAAATTGACCATTGATCGAGTCAAATACGTACATTCAAAT</left_flank>
        <right_flank>TTTTCCGGATTATTAGACCACTTGTTTGGTGAAAAGAGAAATTTAGGTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTATTAGATTTTCTCAGAATATTCAATGGGATTAGCATTGGGAAGTAACACCTCATCTATTTTCATTTAACCTTTTTGTATATTACTCTAGAAGTCTTCATTTTTAATCTTAGGATTAGCTCTATTGTATTTTTCTCTTTTTTTCCCTTCTCACCTCTCTTTCCACCATTTTTCTCCAACTGAAAAAAAAATGCACAGATTTTCAAGTTCTGATGCTATTCTGCGCAGGGTCACGTCTCCTTTCTTTCTGGTGTGTGTGTTTTCCAGGAAACTGGATAATCTCGGAAAGAAGTCCGATCCCTTGTCACCTTTAAAGCCTTTATGCGAATAAAGACTTTTTGTTAACAAGATAAGTCAAATACGTGTGTTAAGAAAGTTTCTTCAAAAAAAAAAGATGTTGTTGACAAAGTGTATGATAATCCTTGACGTCAGGAACGACGAAAGATGTCGAATGTTAAAAAATTGACCATTGATCGAGTCAAATACGTACATTCAAATGTTTTCCGGATTATTAGACCACTTGTTTGGTGAAAAGAGAAATTTAGGTGAAACGGCACAAAACGAACGTCATTGGAATTCATACGAACAAAATTATCATATTCGTAAAAAGGATGTTTTGGCCACCTTACGGAGTATTGTTGACAGATATTGTGCTGGTGAATGGTAATTTGCATACGATAATAGAACAATATGGATAGCTAATTGCAAATGAAGTGGGCGGGATCATTTTTGGAAAGGTTCGGTAAAATGTTTTTGTTCGGAATTCAGAGAAGAAAATTTTTTGTTGAGCGGTTTTAAAAGTGTTATTTTAGTCAAATTAGCTTGAAGTTGACATTCTCATTTTCCAATACTCATCAGACAGTTCCAATTTTTAAAAATTTATTTTAGAAAAAAAAACAGAATAGCTGTGAGGTATTTTATTTCAATACGTAAAATACGATACCACTCTTATAAAACCACTTCAATAGAATAACCAATACCAACTTTTAACTTTGAATT</canonical>
            <polymorphic>TCTATTAGATTTTCTCAGAATATTCAATGGGATTAGCATTGGGAAGTAACACCTCATCTATTTTCATTTAACCTTTTTGTATATTACTCTAGAAGTCTTCATTTTTAATCTTAGGATTAGCTCTATTGTATTTTTCTCTTTTTTTCCCTTCTCACCTCTCTTTCCACCATTTTTCTCCAACTGAAAAAAAAATGCACAGATTTTCAAGTTCTGATGCTATTCTGCGCAGGGTCACGTCTCCTTTCTTTCTGGTGTGTGTGTTTTCCAGGAAACTGGATAATCTCGGAAAGAAGTCCGATCCCTTGTCACCTTTAAAGCCTTTATGCGAATAAAGACTTTTTGTTAACAAGATAAGTCAAATACGTGTGTTAAGAAAGTTTCTTCAAAAAAAAAAGATGTTGTTGACAAAGTGTATGATAATCCTTGACGTCAGGAACGACGAAAGATGTCGAATGTTAAAAAATTGACCATTGATCGAGTCAAATACGTACATTCAAATKTTTTCCGGATTATTAGACCACTTGTTTGGTGAAAAGAGAAATTTAGGTGAAACGGCACAAAACGAACGTCATTGGAATTCATACGAACAAAATTATCATATTCGTAAAAAGGATGTTTTGGCCACCTTACGGAGTATTGTTGACAGATATTGTGCTGGTGAATGGTAATTTGCATACGATAATAGAACAATATGGATAGCTAATTGCAAATGAAGTGGGCGGGATCATTTTTGGAAAGGTTCGGTAAAATGTTTTTGTTCGGAATTCAGAGAAGAAAATTTTTTGTTGAGCGGTTTTAAAAGTGTTATTTTAGTCAAATTAGCTTGAAGTTGACATTCTCATTTTCCAATACTCATCAGACAGTTCCAATTTTTAAAAATTTATTTTAGAAAAAAAAACAGAATAGCTGTGAGGTATTTTATTTCAATACGTAAAATACGATACCACTCTTATAAAACCACTTCAATAGAATAACCAATACCAACTTTTAACTTTGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAAAGATGTCGAATGTTAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCTATTATCGTATGCAAATTACC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGAAAGATGTCGAATGTTAAAAAATTGACCATTGATCGAGTCAAATACGTACATTCAAATGTTTTCCGGATTATTAGACCACTTGTTTGGTGAAAAGAGAAATTTAGGTGAAACGGCACAAAACGAACGTCATTGGAATTCATACGAACAAAATTATCATATTCGTAAAAAGGATGTTTTGGCCACCTTACGGAGTATTGTTGACAGATATTGTGCTGGTGAATGGTAATTTGCATACGATAATAGAA</canonical_amplicon>
		<polymorphic_amplicon>CGAAAGATGTCGAATGTTAAAAAATTGACCATTGATCGAGTCAAATACGTACATTCAAATKTTTTCCGGATTATTAGACCACTTGTTTGGTGAAAAGAGAAATTTAGGTGAAACGGCACAAAACGAACGTCATTGGAATTCATACGAACAAAATTATCATATTCGTAAAAAGGATGTTTTGGCCACCTTACGGAGTATTGTTGACAGATATTGTGCTGGTGAATGGTAATTTGCATACGATAATAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19008</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>420540</contig_pos>
        <strand></strand>
        <context>TCGAGAAGAA[T/C]ACAATATCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAACAGAAGAAATGGGCGGGATTTTGCAAATCAGAAAATGTCGAGAAGAA</left_flank>
        <right_flank>ACAATATCCGGAAAGGAAGAACGTGGGCAGTGTCCAATTAAATGAAGCAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGATGAAATTAGATCACATTGTGACAGATACATTTTCACATCAGAAATCCAAGTGGACTTTATTGTTTTCGAAAAGCAAGAGATGATAGTAATGATTCATGAGTTTTTTTGTACAAACTGACTATAAAACCTCAAAATGAATCACCTTACAAACAAGAGCTCAACAAATTGATTTTATTTTATATCTTATCAAATCAAACTCACGCAATAACACTTTTGAAGTTCCCGATCGTACCGATCTTGAAGATTTACCGGCATCCTCAAATCGAGAACTCCTAACCAAAAAGAACCAAAACACCCAATAGAGCACCAAAATCCAAAATTTACACTGAACCAAAACCGTGGGCTGAAAGAAAAAGGTCCGTCAAGATTGACGAGGAAATGTGAAGCTATAGGAAAAATGGAAAATTGCGTAGAAGGCATGAAATTTATAGGACAGAGAAACAAAAACAGAAGAAATGGGCGGGATTTTGCAAATCAGAAAATGTCGAGAAGAATACAATATCCGGAAAGGAAGAACGTGGGCAGTGTCCAATTAAATGAAGCAGGAAAAAACGACATGCATCCTATGACTGACATTTGTTCAATGTGCTCGGGGCTCAATCGTCATGAAACTGTTATTGAGGGTGTAGTATGGAAATGTCTTTGTAGTTTGAAAACAAGAAAATACATAATTTTCGTTGTGGTTGAATTTTATTAAAATCTAAGGAACATGATTGAATGGGAACGTATTGAGGGATCAGTTTGAGTCTTGCAAAAACAGAGAATAAACTTTTCAGATGCATTTCGAAGACATTTCCATTTTTCGGGAAAATCTTTTTTCGAAGCTAGTCTATACGTGCCCTTTGACCTTAATTATCACTATTCCTAAAAGAAATATCAAAAATTTGTCACTAAATAAAATGTTAGTGATATTATGATAACTGAAGTATCAGTGAAACTGTGATTGATATCTTTTGAAAGGACCGAGATAATTGAGCTTAAAGCTCAAGAATAAT</canonical>
            <polymorphic>TTTGATGAAATTAGATCACATTGTGACAGATACATTTTCACATCAGAAATCCAAGTGGACTTTATTGTTTTCGAAAAGCAAGAGATGATAGTAATGATTCATGAGTTTTTTTGTACAAACTGACTATAAAACCTCAAAATGAATCACCTTACAAACAAGAGCTCAACAAATTGATTTTATTTTATATCTTATCAAATCAAACTCACGCAATAACACTTTTGAAGTTCCCGATCGTACCGATCTTGAAGATTTACCGGCATCCTCAAATCGAGAACTCCTAACCAAAAAGAACCAAAACACCCAATAGAGCACCAAAATCCAAAATTTACACTGAACCAAAACCGTGGGCTGAAAGAAAAAGGTCCGTCAAGATTGACGAGGAAATGTGAAGCTATAGGAAAAATGGAAAATTGCGTAGAAGGCATGAAATTTATAGGACAGAGAAACAAAAACAGAAGAAATGGGCGGGATTTTGCAAATCAGAAAATGTCGAGAAGAAYACAATATCCGGAAAGGAAGAACGTGGGCAGTGTCCAATTAAATGAAGCAGGAAAAAACGACATGCATCCTATGACTGACATTTGTTCAATGTGCTCGGGGCTCAATCGTCATGAAACTGTTATTGAGGGTGTAGTATGGAAATGTCTTTGTAGTTTGAAAACAAGAAAATACATAATTTTCGTTGTGGTTGAATTTTATTAAAATCTAAGGAACATGATTGAATGGGAACGTATTGAGGGATCAGTTTGAGTCTTGCAAAAACAGAGAATAAACTTTTCAGATGCATTTCGAAGACATTTCCATTTTTCGGGAAAATCTTTTTTCGAAGCTAGTCTATACGTGCCCTTTGACCTTAATTATCACTATTCCTAAAAGAAATATCAAAAATTTGTCACTAAATAAAATGTTAGTGATATTATGATAACTGAAGTATCAGTGAAACTGTGATTGATATCTTTTGAAAGGACCGAGATAATTGAGCTTAAAGCTCAAGAATAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAACAAAAACAGAAGAAATG</pcr_primer_p1>
		<pcr_primer_p2>AACCACAACGAAAATTATGTATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGAAACAAAAACAGAAGAAATGGGCGGGATTTTGCAAATCAGAAAATGTCGAGAAGAATACAATATCCGGAAAGGAAGAACGTGGGCAGTGTCCAATTAAATGAAGCAGGAAAAAACGACATGCATCCTATGACTGACATTTGTTCAATGTGCTCGGGGCTCAATCGTCATGAAACTGTTATTGAGGGTGTAGTATGGAAATGTCTTTGTAGTTTGAAAACAAGAAAATACATAATTTTCGTTGTGGTT</canonical_amplicon>
		<polymorphic_amplicon>GAGAAACAAAAACAGAAGAAATGGGCGGGATTTTGCAAATCAGAAAATGTCGAGAAGAAYACAATATCCGGAAAGGAAGAACGTGGGCAGTGTCCAATTAAATGAAGCAGGAAAAAACGACATGCATCCTATGACTGACATTTGTTCAATGTGCTCGGGGCTCAATCGTCATGAAACTGTTATTGAGGGTGTAGTATGGAAATGTCTTTGTAGTTTGAAAACAAGAAAATACATAATTTTCGTTGTGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19009</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>420328</contig_pos>
        <strand></strand>
        <context>CTAACCAAAA[A/C]GAACCAAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGATCTTGAAGATTTACCGGCATCCTCAAATCGAGAACTCCTAACCAAAA</left_flank>
        <right_flank>GAACCAAAACACCCAATAGAGCACCAAAATCCAAAATTTACACTGAACCA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTCGTGGCCAACTGGCTTTTGGAGGGATGGTATCCACAAGTTACCTGAATGTTGTCAGCATGCCGTGAACCACGACGGAGCATACTGCCAATCTTGGATTAATCGTTTTTGTCTTATCCACGAATTAAAAAAAATGCAAAGTTACTTTCCTTCCAACCTAATATAATGTCCACAACTTGCTCAAATGTTTGCTGACTAACTAGTTTTTGTTTTGATGAAATTAGATCACATTGTGACAGATACATTTTCACATCAGAAATCCAAGTGGACTTTATTGTTTTCGAAAAGCAAGAGATGATAGTAATGATTCATGAGTTTTTTTGTACAAACTGACTATAAAACCTCAAAATGAATCACCTTACAAACAAGAGCTCAACAAATTGATTTTATTTTATATCTTATCAAATCAAACTCACGCAATAACACTTTTGAAGTTCCCGATCGTACCGATCTTGAAGATTTACCGGCATCCTCAAATCGAGAACTCCTAACCAAAAAGAACCAAAACACCCAATAGAGCACCAAAATCCAAAATTTACACTGAACCAAAACCGTGGGCTGAAAGAAAAAGGTCCGTCAAGATTGACGAGGAAATGTGAAGCTATAGGAAAAATGGAAAATTGCGTAGAAGGCATGAAATTTATAGGACAGAGAAACAAAAACAGAAGAAATGGGCGGGATTTTGCAAATCAGAAAATGTCGAGAAGAATACAATATCCGGAAAGGAAGAACGTGGGCAGTGTCCAATTAAATGAAGCAGGAAAAAACGACATGCATCCTATGACTGACATTTGTTCAATGTGCTCGGGGCTCAATCGTCATGAAACTGTTATTGAGGGTGTAGTATGGAAATGTCTTTGTAGTTTGAAAACAAGAAAATACATAATTTTCGTTGTGGTTGAATTTTATTAAAATCTAAGGAACATGATTGAATGGGAACGTATTGAGGGATCAGTTTGAGTCTTGCAAAAACAGAGAATAAACTTTTCAGATGCATT</canonical>
            <polymorphic>GATTCGTGGCCAACTGGCTTTTGGAGGGATGGTATCCACAAGTTACCTGAATGTTGTCAGCATGCCGTGAACCACGACGGAGCATACTGCCAATCTTGGATTAATCGTTTTTGTCTTATCCACGAATTAAAAAAAATGCAAAGTTACTTTCCTTCCAACCTAATATAATGTCCACAACTTGCTCAAATGTTTGCTGACTAACTAGTTTTTGTTTTGATGAAATTAGATCACATTGTGACAGATACATTTTCACATCAGAAATCCAAGTGGACTTTATTGTTTTCGAAAAGCAAGAGATGATAGTAATGATTCATGAGTTTTTTTGTACAAACTGACTATAAAACCTCAAAATGAATCACCTTACAAACAAGAGCTCAACAAATTGATTTTATTTTATATCTTATCAAATCAAACTCACGCAATAACACTTTTGAAGTTCCCGATCGTACCGATCTTGAAGATTTACCGGCATCCTCAAATCGAGAACTCCTAACCAAAAMGAACCAAAACACCCAATAGAGCACCAAAATCCAAAATTTACACTGAACCAAAACCGTGGGCTGAAAGAAAAAGGTCCGTCAAGATTGACGAGGAAATGTGAAGCTATAGGAAAAATGGAAAATTGCGTAGAAGGCATGAAATTTATAGGACAGAGAAACAAAAACAGAAGAAATGGGCGGGATTTTGCAAATCAGAAAATGTCGAGAAGAATACAATATCCGGAAAGGAAGAACGTGGGCAGTGTCCAATTAAATGAAGCAGGAAAAAACGACATGCATCCTATGACTGACATTTGTTCAATGTGCTCGGGGCTCAATCGTCATGAAACTGTTATTGAGGGTGTAGTATGGAAATGTCTTTGTAGTTTGAAAACAAGAAAATACATAATTTTCGTTGTGGTTGAATTTTATTAAAATCTAAGGAACATGATTGAATGGGAACGTATTGAGGGATCAGTTTGAGTCTTGCAAAAACAGAGAATAAACTTTTCAGATGCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAGCTCAACAAATTGATTTTA</pcr_primer_p1>
		<pcr_primer_p2>CATTTTTCCTATAGCTTCACATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGAGCTCAACAAATTGATTTTATTTTATATCTTATCAAATCAAACTCACGCAATAACACTTTTGAAGTTCCCGATCGTACCGATCTTGAAGATTTACCGGCATCCTCAAATCGAGAACTCCTAACCAAAAAGAACCAAAACACCCAATAGAGCACCAAAATCCAAAATTTACACTGAACCAAAACCGTGGGCTGAAAGAAAAAGGTCCGTCAAGATTGACGAGGAAATGTGAAGCTATAGGAAAAATG</canonical_amplicon>
		<polymorphic_amplicon>AAGAGCTCAACAAATTGATTTTATTTTATATCTTATCAAATCAAACTCACGCAATAACACTTTTGAAGTTCCCGATCGTACCGATCTTGAAGATTTACCGGCATCCTCAAATCGAGAACTCCTAACCAAAAMGAACCAAAACACCCAATAGAGCACCAAAATCCAAAATTTACACTGAACCAAAACCGTGGGCTGAAAGAAAAAGGTCCGTCAAGATTGACGAGGAAATGTGAAGCTATAGGAAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19010</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>444330</contig_pos>
        <strand>+</strand>
        <context>TCATTATCAA[C/T]TCCGCGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACTGTGTCTTCCATTTCATTCACGTGAAGATAGTTTGACTCATTATCAA</left_flank>
        <right_flank>TCCGCGAAAAAGAGAAGAAGCGATCATAAAAAAATGGGGAAGCAGGGGGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGACTTTACTATAACAAGCTCTCATTTTTCAGGGTCTTCATTGATTTTCCAGCATTGTTCAGTTAACCTTCTTCCCTTCAGGTTAGCTATCGAACTCTTCTGCTCTGAAAATCCGATTTATTCAACCACTTTTTTCAATTAATATAATTTTTCCCACGACGATTTGGTATAATGCCGTGCGAACATTTATTATATATTTTAATCAGATAATTGCACAATCGGAATTTTCTCAGGAAATAATTCTTTTTTGGATATAATTTTTCATGGTTTCCTGAACTTCTCACACGGGTTCCTGATAAAATTCACCATTAAATCTAAGTGTTTCTTTGAAAATCGACTGCTGATAAAACAGTATCTTTATCAGAAGCTAATTAACAATTGATTGCACACTTTTTTCGCACCCGTTACTGATTTCCTGATATGGACCCGAACTGACAGACTTTCCATGAACTGTGTCTTCCATTTCATTCACGTGAAGATAGTTTGACTCATTATCAATTCCGCGAAAAAGAGAAGAAGCGATCATAAAAAAATGGGGAAGCAGGGGGAAAATAAAAAAATAATGTCTAGATAAAGTGGGGGAGAAGTCTTCGGTCGTTGTTTGGAGTCTACAATCATCAAAGATAGATAAATTCAAAGAAGACAAAGGTCACGAAGGTGAACTGAAAGAGATATAAGGAATTTGGAGATCAGAAACCGCAGTTCTGATTTTTCAGGTCCCTTTGGAAAAACCCTGTATTCATTTTTATTATCCATCATGGTTCTGCTACCCGAATAACCAATTTTTGATTACAGAACTTTTTTTCAAAATCTACAAATTTACCAGACTACCAATTTGGTTACAATGTCTCTCATTTTCAACACTGTAAAAGTTTAATGTATTTTTGTTTTATTTCATAACGACAGGTGTCAGAAAATTTGCTGATCTATCTACCGAAAACTGTGTTCTAAACAAGTATCGAACCGATCGGGTCAAAATCAATTTTTTCAAATAGCACG</canonical>
            <polymorphic>CAGACTTTACTATAACAAGCTCTCATTTTTCAGGGTCTTCATTGATTTTCCAGCATTGTTCAGTTAACCTTCTTCCCTTCAGGTTAGCTATCGAACTCTTCTGCTCTGAAAATCCGATTTATTCAACCACTTTTTTCAATTAATATAATTTTTCCCACGACGATTTGGTATAATGCCGTGCGAACATTTATTATATATTTTAATCAGATAATTGCACAATCGGAATTTTCTCAGGAAATAATTCTTTTTTGGATATAATTTTTCATGGTTTCCTGAACTTCTCACACGGGTTCCTGATAAAATTCACCATTAAATCTAAGTGTTTCTTTGAAAATCGACTGCTGATAAAACAGTATCTTTATCAGAAGCTAATTAACAATTGATTGCACACTTTTTTCGCACCCGTTACTGATTTCCTGATATGGACCCGAACTGACAGACTTTCCATGAACTGTGTCTTCCATTTCATTCACGTGAAGATAGTTTGACTCATTATCAAYTCCGCGAAAAAGAGAAGAAGCGATCATAAAAAAATGGGGAAGCAGGGGGAAAATAAAAAAATAATGTCTAGATAAAGTGGGGGAGAAGTCTTCGGTCGTTGTTTGGAGTCTACAATCATCAAAGATAGATAAATTCAAAGAAGACAAAGGTCACGAAGGTGAACTGAAAGAGATATAAGGAATTTGGAGATCAGAAACCGCAGTTCTGATTTTTCAGGTCCCTTTGGAAAAACCCTGTATTCATTTTTATTATCCATCATGGTTCTGCTACCCGAATAACCAATTTTTGATTACAGAACTTTTTTTCAAAATCTACAAATTTACCAGACTACCAATTTGGTTACAATGTCTCTCATTTTCAACACTGTAAAAGTTTAATGTATTTTTGTTTTATTTCATAACGACAGGTGTCAGAAAATTTGCTGATCTATCTACCGAAAACTGTGTTCTAAACAAGTATCGAACCGATCGGGTCAAAATCAATTTTTTCAAATAGCACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>137 134 120 101 83 70 65 63 49 44 36 19 17 16 16 14 9 7</canonical_bands>
                <polymorphic_bands>254 137 101 83 70 65 63 49 44 36 19 17 16 16 14 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCGACTGCTGATAAAACAGTAT</pcr_primer_p1>
		<pcr_primer_p2>CCCCCACTTTATCTAGACATTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCGACTGCTGATAAAACAGTATCTTTATCAGAAGCTAATTAACAATTGATTGCACACTTTTTTCGCACCCGTTACTGATTTCCTGATATGGACCCGAACTGACAGACTTTCCATGAACTGTGTCTTCCATTTCATTCACGTGAAGATAGTTTGACTCATTATCAATTCCGCGAAAAAGAGAAGAAGCGATCATAAAAAAATGGGGAAGCAGGGGGAAAATAAAAAAATAATGTCTAGATAAAGTGGGGG</canonical_amplicon>
		<polymorphic_amplicon>ATCGACTGCTGATAAAACAGTATCTTTATCAGAAGCTAATTAACAATTGATTGCACACTTTTTTCGCACCCGTTACTGATTTCCTGATATGGACCCGAACTGACAGACTTTCCATGAACTGTGTCTTCCATTTCATTCACGTGAAGATAGTTTGACTCATTATCAAYTCCGCGAAAAAGAGAAGAAGCGATCATAAAAAAATGGGGAAGCAGGGGGAAAATAAAAAAATAATGTCTAGATAAAGTGGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19011</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>444390</contig_pos>
        <strand>+</strand>
        <context>AAAATAAAAA[A/T]ATAATGTCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGAGAAGAAGCGATCATAAAAAAATGGGGAAGCAGGGGGAAAATAAAAA</left_flank>
        <right_flank>ATAATGTCTAGATAAAGTGGGGGAGAAGTCTTCGGTCGTTGTTTGGAGTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTTAACCTTCTTCCCTTCAGGTTAGCTATCGAACTCTTCTGCTCTGAAAATCCGATTTATTCAACCACTTTTTTCAATTAATATAATTTTTCCCACGACGATTTGGTATAATGCCGTGCGAACATTTATTATATATTTTAATCAGATAATTGCACAATCGGAATTTTCTCAGGAAATAATTCTTTTTTGGATATAATTTTTCATGGTTTCCTGAACTTCTCACACGGGTTCCTGATAAAATTCACCATTAAATCTAAGTGTTTCTTTGAAAATCGACTGCTGATAAAACAGTATCTTTATCAGAAGCTAATTAACAATTGATTGCACACTTTTTTCGCACCCGTTACTGATTTCCTGATATGGACCCGAACTGACAGACTTTCCATGAACTGTGTCTTCCATTTCATTCACGTGAAGATAGTTTGACTCATTATCAATTCCGCGAAAAAGAGAAGAAGCGATCATAAAAAAATGGGGAAGCAGGGGGAAAATAAAAAAATAATGTCTAGATAAAGTGGGGGAGAAGTCTTCGGTCGTTGTTTGGAGTCTACAATCATCAAAGATAGATAAATTCAAAGAAGACAAAGGTCACGAAGGTGAACTGAAAGAGATATAAGGAATTTGGAGATCAGAAACCGCAGTTCTGATTTTTCAGGTCCCTTTGGAAAAACCCTGTATTCATTTTTATTATCCATCATGGTTCTGCTACCCGAATAACCAATTTTTGATTACAGAACTTTTTTTCAAAATCTACAAATTTACCAGACTACCAATTTGGTTACAATGTCTCTCATTTTCAACACTGTAAAAGTTTAATGTATTTTTGTTTTATTTCATAACGACAGGTGTCAGAAAATTTGCTGATCTATCTACCGAAAACTGTGTTCTAAACAAGTATCGAACCGATCGGGTCAAAATCAATTTTTTCAAATAGCACGTATTAGAAGTTGAAAATTCTTTCAGATGGGCAGTTTCCAGATTTTTGGCTTTTGAGAAAT</canonical>
            <polymorphic>CAGTTAACCTTCTTCCCTTCAGGTTAGCTATCGAACTCTTCTGCTCTGAAAATCCGATTTATTCAACCACTTTTTTCAATTAATATAATTTTTCCCACGACGATTTGGTATAATGCCGTGCGAACATTTATTATATATTTTAATCAGATAATTGCACAATCGGAATTTTCTCAGGAAATAATTCTTTTTTGGATATAATTTTTCATGGTTTCCTGAACTTCTCACACGGGTTCCTGATAAAATTCACCATTAAATCTAAGTGTTTCTTTGAAAATCGACTGCTGATAAAACAGTATCTTTATCAGAAGCTAATTAACAATTGATTGCACACTTTTTTCGCACCCGTTACTGATTTCCTGATATGGACCCGAACTGACAGACTTTCCATGAACTGTGTCTTCCATTTCATTCACGTGAAGATAGTTTGACTCATTATCAATTCCGCGAAAAAGAGAAGAAGCGATCATAAAAAAATGGGGAAGCAGGGGGAAAATAAAAAWATAATGTCTAGATAAAGTGGGGGAGAAGTCTTCGGTCGTTGTTTGGAGTCTACAATCATCAAAGATAGATAAATTCAAAGAAGACAAAGGTCACGAAGGTGAACTGAAAGAGATATAAGGAATTTGGAGATCAGAAACCGCAGTTCTGATTTTTCAGGTCCCTTTGGAAAAACCCTGTATTCATTTTTATTATCCATCATGGTTCTGCTACCCGAATAACCAATTTTTGATTACAGAACTTTTTTTCAAAATCTACAAATTTACCAGACTACCAATTTGGTTACAATGTCTCTCATTTTCAACACTGTAAAAGTTTAATGTATTTTTGTTTTATTTCATAACGACAGGTGTCAGAAAATTTGCTGATCTATCTACCGAAAACTGTGTTCTAAACAAGTATCGAACCGATCGGGTCAAAATCAATTTTTTCAAATAGCACGTATTAGAAGTTGAAAATTCTTTCAGATGGGCAGTTTCCAGATTTTTGGCTTTTGAGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTACTGATTTCCTGATATGGAC</pcr_primer_p1>
		<pcr_primer_p2>GTGACCTTTGTCTTCTTTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTACTGATTTCCTGATATGGACCCGAACTGACAGACTTTCCATGAACTGTGTCTTCCATTTCATTCACGTGAAGATAGTTTGACTCATTATCAATTCCGCGAAAAAGAGAAGAAGCGATCATAAAAAAATGGGGAAGCAGGGGGAAAATAAAAAAATAATGTCTAGATAAAGTGGGGGAGAAGTCTTCGGTCGTTGTTTGGAGTCTACAATCATCAAAGATAGATAAATTCAAAGAAGACAAAGGTCAC</canonical_amplicon>
		<polymorphic_amplicon>GTTACTGATTTCCTGATATGGACCCGAACTGACAGACTTTCCATGAACTGTGTCTTCCATTTCATTCACGTGAAGATAGTTTGACTCATTATCAATTCCGCGAAAAAGAGAAGAAGCGATCATAAAAAAATGGGGAAGCAGGGGGAAAATAAAAAWATAATGTCTAGATAAAGTGGGGGAGAAGTCTTCGGTCGTTGTTTGGAGTCTACAATCATCAAAGATAGATAAATTCAAAGAAGACAAAGGTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19012</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>444498</contig_pos>
        <strand>+</strand>
        <context>GGTGAACTGA[A/G]AGAGATATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCAAAGATAGATAAATTCAAAGAAGACAAAGGTCACGAAGGTGAACTGA</left_flank>
        <right_flank>AGAGATATAAGGAATTTGGAGATCAGAAACCGCAGTTCTGATTTTTCAGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAATGCCGTGCGAACATTTATTATATATTTTAATCAGATAATTGCACAATCGGAATTTTCTCAGGAAATAATTCTTTTTTGGATATAATTTTTCATGGTTTCCTGAACTTCTCACACGGGTTCCTGATAAAATTCACCATTAAATCTAAGTGTTTCTTTGAAAATCGACTGCTGATAAAACAGTATCTTTATCAGAAGCTAATTAACAATTGATTGCACACTTTTTTCGCACCCGTTACTGATTTCCTGATATGGACCCGAACTGACAGACTTTCCATGAACTGTGTCTTCCATTTCATTCACGTGAAGATAGTTTGACTCATTATCAATTCCGCGAAAAAGAGAAGAAGCGATCATAAAAAAATGGGGAAGCAGGGGGAAAATAAAAAAATAATGTCTAGATAAAGTGGGGGAGAAGTCTTCGGTCGTTGTTTGGAGTCTACAATCATCAAAGATAGATAAATTCAAAGAAGACAAAGGTCACGAAGGTGAACTGAAAGAGATATAAGGAATTTGGAGATCAGAAACCGCAGTTCTGATTTTTCAGGTCCCTTTGGAAAAACCCTGTATTCATTTTTATTATCCATCATGGTTCTGCTACCCGAATAACCAATTTTTGATTACAGAACTTTTTTTCAAAATCTACAAATTTACCAGACTACCAATTTGGTTACAATGTCTCTCATTTTCAACACTGTAAAAGTTTAATGTATTTTTGTTTTATTTCATAACGACAGGTGTCAGAAAATTTGCTGATCTATCTACCGAAAACTGTGTTCTAAACAAGTATCGAACCGATCGGGTCAAAATCAATTTTTTCAAATAGCACGTATTAGAAGTTGAAAATTCTTTCAGATGGGCAGTTTCCAGATTTTTGGCTTTTGAGAAATAAAAAGAGAAGATGAAAGAAAAGATTGGAAAAATAGGAAAAAATATTATAACATTTTGGTAATATTTGTGGCTGATTGAATGTTTCAGGAGAGAACCGTTGATTCTGA</canonical>
            <polymorphic>TATAATGCCGTGCGAACATTTATTATATATTTTAATCAGATAATTGCACAATCGGAATTTTCTCAGGAAATAATTCTTTTTTGGATATAATTTTTCATGGTTTCCTGAACTTCTCACACGGGTTCCTGATAAAATTCACCATTAAATCTAAGTGTTTCTTTGAAAATCGACTGCTGATAAAACAGTATCTTTATCAGAAGCTAATTAACAATTGATTGCACACTTTTTTCGCACCCGTTACTGATTTCCTGATATGGACCCGAACTGACAGACTTTCCATGAACTGTGTCTTCCATTTCATTCACGTGAAGATAGTTTGACTCATTATCAATTCCGCGAAAAAGAGAAGAAGCGATCATAAAAAAATGGGGAAGCAGGGGGAAAATAAAAAAATAATGTCTAGATAAAGTGGGGGAGAAGTCTTCGGTCGTTGTTTGGAGTCTACAATCATCAAAGATAGATAAATTCAAAGAAGACAAAGGTCACGAAGGTGAACTGARAGAGATATAAGGAATTTGGAGATCAGAAACCGCAGTTCTGATTTTTCAGGTCCCTTTGGAAAAACCCTGTATTCATTTTTATTATCCATCATGGTTCTGCTACCCGAATAACCAATTTTTGATTACAGAACTTTTTTTCAAAATCTACAAATTTACCAGACTACCAATTTGGTTACAATGTCTCTCATTTTCAACACTGTAAAAGTTTAATGTATTTTTGTTTTATTTCATAACGACAGGTGTCAGAAAATTTGCTGATCTATCTACCGAAAACTGTGTTCTAAACAAGTATCGAACCGATCGGGTCAAAATCAATTTTTTCAAATAGCACGTATTAGAAGTTGAAAATTCTTTCAGATGGGCAGTTTCCAGATTTTTGGCTTTTGAGAAATAAAAAGAGAAGATGAAAGAAAAGATTGGAAAAATAGGAAAAAATATTATAACATTTTGGTAATATTTGTGGCTGATTGAATGTTTCAGGAGAGAACCGTTGATTCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGAAGAAGCGATCATAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCATGATGGATAATAAAAATGAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGAGAAGAAGCGATCATAAAAAAATGGGGAAGCAGGGGGAAAATAAAAAAATAATGTCTAGATAAAGTGGGGGAGAAGTCTTCGGTCGTTGTTTGGAGTCTACAATCATCAAAGATAGATAAATTCAAAGAAGACAAAGGTCACGAAGGTGAACTGAAAGAGATATAAGGAATTTGGAGATCAGAAACCGCAGTTCTGATTTTTCAGGTCCCTTTGGAAAAACCCTGTATTCATTTTTATTATCCATCATGG</canonical_amplicon>
		<polymorphic_amplicon>AGAGAAGAAGCGATCATAAAAAAATGGGGAAGCAGGGGGAAAATAAAAAAATAATGTCTAGATAAAGTGGGGGAGAAGTCTTCGGTCGTTGTTTGGAGTCTACAATCATCAAAGATAGATAAATTCAAAGAAGACAAAGGTCACGAAGGTGAACTGARAGAGATATAAGGAATTTGGAGATCAGAAACCGCAGTTCTGATTTTTCAGGTCCCTTTGGAAAAACCCTGTATTCATTTTTATTATCCATCATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19013</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>444782</contig_pos>
        <strand>+</strand>
        <context>CTGTGTTCTA[A/G]ACAAGTATCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGACAGGTGTCAGAAAATTTGCTGATCTATCTACCGAAAACTGTGTTCTA</left_flank>
        <right_flank>ACAAGTATCGAACCGATCGGGTCAAAATCAATTTTTTCAAATAGCACGTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGTCTTCCATTTCATTCACGTGAAGATAGTTTGACTCATTATCAATTCCGCGAAAAAGAGAAGAAGCGATCATAAAAAAATGGGGAAGCAGGGGGAAAATAAAAAAATAATGTCTAGATAAAGTGGGGGAGAAGTCTTCGGTCGTTGTTTGGAGTCTACAATCATCAAAGATAGATAAATTCAAAGAAGACAAAGGTCACGAAGGTGAACTGAAAGAGATATAAGGAATTTGGAGATCAGAAACCGCAGTTCTGATTTTTCAGGTCCCTTTGGAAAAACCCTGTATTCATTTTTATTATCCATCATGGTTCTGCTACCCGAATAACCAATTTTTGATTACAGAACTTTTTTTCAAAATCTACAAATTTACCAGACTACCAATTTGGTTACAATGTCTCTCATTTTCAACACTGTAAAAGTTTAATGTATTTTTGTTTTATTTCATAACGACAGGTGTCAGAAAATTTGCTGATCTATCTACCGAAAACTGTGTTCTAAACAAGTATCGAACCGATCGGGTCAAAATCAATTTTTTCAAATAGCACGTATTAGAAGTTGAAAATTCTTTCAGATGGGCAGTTTCCAGATTTTTGGCTTTTGAGAAATAAAAAGAGAAGATGAAAGAAAAGATTGGAAAAATAGGAAAAAATATTATAACATTTTGGTAATATTTGTGGCTGATTGAATGTTTCAGGAGAGAACCGTTGATTCTGACTATTCAGTTGATTCTGACTATTTTCCGGAACCTGGAGCTTAGCTGTCAAGTGTCCGATCACTTTGAAAATTTCGGAGAGTGTAAAACAGACATATAGTGAAAATTTTGCATTCACACAACTTTTTGAAAATTCCGACTTATCCAGTTATTTGTCGAGTTCTGAAAGATAACTGTTTTTTTACGTTATCCGTACTAACAATTGGCCAAAGGGCGTATTTCAGAACTAGGAAAATAGCTGAATAACTAGAAATTTTCATGAAAAGATTGGGAATGTAAATTTTTC</canonical>
            <polymorphic>TGTGTCTTCCATTTCATTCACGTGAAGATAGTTTGACTCATTATCAATTCCGCGAAAAAGAGAAGAAGCGATCATAAAAAAATGGGGAAGCAGGGGGAAAATAAAAAAATAATGTCTAGATAAAGTGGGGGAGAAGTCTTCGGTCGTTGTTTGGAGTCTACAATCATCAAAGATAGATAAATTCAAAGAAGACAAAGGTCACGAAGGTGAACTGAAAGAGATATAAGGAATTTGGAGATCAGAAACCGCAGTTCTGATTTTTCAGGTCCCTTTGGAAAAACCCTGTATTCATTTTTATTATCCATCATGGTTCTGCTACCCGAATAACCAATTTTTGATTACAGAACTTTTTTTCAAAATCTACAAATTTACCAGACTACCAATTTGGTTACAATGTCTCTCATTTTCAACACTGTAAAAGTTTAATGTATTTTTGTTTTATTTCATAACGACAGGTGTCAGAAAATTTGCTGATCTATCTACCGAAAACTGTGTTCTARACAAGTATCGAACCGATCGGGTCAAAATCAATTTTTTCAAATAGCACGTATTAGAAGTTGAAAATTCTTTCAGATGGGCAGTTTCCAGATTTTTGGCTTTTGAGAAATAAAAAGAGAAGATGAAAGAAAAGATTGGAAAAATAGGAAAAAATATTATAACATTTTGGTAATATTTGTGGCTGATTGAATGTTTCAGGAGAGAACCGTTGATTCTGACTATTCAGTTGATTCTGACTATTTTCCGGAACCTGGAGCTTAGCTGTCAAGTGTCCGATCACTTTGAAAATTTCGGAGAGTGTAAAACAGACATATAGTGAAAATTTTGCATTCACACAACTTTTTGAAAATTCCGACTTATCCAGTTATTTGTCGAGTTCTGAAAGATAACTGTTTTTTTACGTTATCCGTACTAACAATTGGCCAAAGGGCGTATTTCAGAACTAGGAAAATAGCTGAATAACTAGAAATTTTCATGAAAAGATTGGGAATGTAAATTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCTCTCATTTTCAACACTGTA</pcr_primer_p1>
		<pcr_primer_p2>TATTTTTCCAATCTTTTCTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTCTCTCATTTTCAACACTGTAAAAGTTTAATGTATTTTTGTTTTATTTCATAACGACAGGTGTCAGAAAATTTGCTGATCTATCTACCGAAAACTGTGTTCTAAACAAGTATCGAACCGATCGGGTCAAAATCAATTTTTTCAAATAGCACGTATTAGAAGTTGAAAATTCTTTCAGATGGGCAGTTTCCAGATTTTTGGCTTTTGAGAAATAAAAAGAGAAGATGAAAGAAAAGATTGGAAAAATA</canonical_amplicon>
		<polymorphic_amplicon>TGTCTCTCATTTTCAACACTGTAAAAGTTTAATGTATTTTTGTTTTATTTCATAACGACAGGTGTCAGAAAATTTGCTGATCTATCTACCGAAAACTGTGTTCTARACAAGTATCGAACCGATCGGGTCAAAATCAATTTTTTCAAATAGCACGTATTAGAAGTTGAAAATTCTTTCAGATGGGCAGTTTCCAGATTTTTGGCTTTTGAGAAATAAAAAGAGAAGATGAAAGAAAAGATTGGAAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19014</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>449781</contig_pos>
        <strand>+</strand>
        <context>GAAAATCTTT[A/G]GCAGCTTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGTAAACTACCCCAACGTGTATAAAATGAAAGTGTAAATGAAAATCTTT</left_flank>
        <right_flank>GCAGCTTTCAATCTCTCAAAATTAAATTTCCTTCCTTTTCCATTACACCC</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAATACTCCAAAATTTCGGAATTCCAAAAACTTGAAAATCGGAATATACCAAACTTTGCAAATTCCAAAATTTTCAAAATATAATTATTCCGATAATCTGAAATAACGAAATCATTGAAATCGGATGGTTTTGATAATCCGAACTTTTCCAAATCGGAAGATACAATATTCCAAAATTCCGTAACTTTAAAAAAGGAAATATTAAAAAATTCCGCAATTCAACCGATTTTGAAATCGGAGTTCGGAATTTTTGAAACTCGGAAAATTCGACATTTTGAAAAATTCCAAAAAGGCCATTCCAAAAATAGTTCTCAGCTTTCGTTAATTTTCCAATTTTTAAACTCACTATTTTTTCTTTTTCTCTCGAGACCCAAACAGCTAATATAAATTTTCTTAGTGAGATTTTTCTCCGAATTATCAGAAAGATTTTATTTTTCATTTCACTAAATGTAAACTACCCCAACGTGTATAAAATGAAAGTGTAAATGAAAATCTTTAGCAGCTTTCAATCTCTCAAAATTAAATTTCCTTCCTTTTCCATTACACCCACTCATCGTCCTGAAAATACTGGGAAGTGATGGAAAAGTAAAATTGGATTCTCATGAACGTATCAAAGTCTTTCCTTCTCCATTTTCTTCGCATTTCCTTCAAAAAAGGAGTGCGCTGCCCCAAAGTTGTCCCGTGTATGTGTTTGGTTTTCTCGAGGAGTACACAGCCCCGTTTTTTCCCCGAGGGTCCCTTTGCCTTCTTCTCTTTATCCCACATAATCCCTCACCGCGTTCGGCCACTACTCCTACTCTATCTCAATTATTGATTCTAGTGAGTGGACCACTCTTACCAAATCTTTTCATTTTTTTGTGATTTTTCGCTCAGAATTTTAATCAATTTTATTATTTTCAGTTCTGTTATGGTTTCAAGCTCCGCAATGGCAAGAACATACGGAGACAAGCCGTCGACTTCTTCGATGGAAGAAGACTTGGAAATCGAGGTGTCAATGA</canonical>
            <polymorphic>TGGAATACTCCAAAATTTCGGAATTCCAAAAACTTGAAAATCGGAATATACCAAACTTTGCAAATTCCAAAATTTTCAAAATATAATTATTCCGATAATCTGAAATAACGAAATCATTGAAATCGGATGGTTTTGATAATCCGAACTTTTCCAAATCGGAAGATACAATATTCCAAAATTCCGTAACTTTAAAAAAGGAAATATTAAAAAATTCCGCAATTCAACCGATTTTGAAATCGGAGTTCGGAATTTTTGAAACTCGGAAAATTCGACATTTTGAAAAATTCCAAAAAGGCCATTCCAAAAATAGTTCTCAGCTTTCGTTAATTTTCCAATTTTTAAACTCACTATTTTTTCTTTTTCTCTCGAGACCCAAACAGCTAATATAAATTTTCTTAGTGAGATTTTTCTCCGAATTATCAGAAAGATTTTATTTTTCATTTCACTAAATGTAAACTACCCCAACGTGTATAAAATGAAAGTGTAAATGAAAATCTTTRGCAGCTTTCAATCTCTCAAAATTAAATTTCCTTCCTTTTCCATTACACCCACTCATCGTCCTGAAAATACTGGGAAGTGATGGAAAAGTAAAATTGGATTCTCATGAACGTATCAAAGTCTTTCCTTCTCCATTTTCTTCGCATTTCCTTCAAAAAAGGAGTGCGCTGCCCCAAAGTTGTCCCGTGTATGTGTTTGGTTTTCTCGAGGAGTACACAGCCCCGTTTTTTCCCCGAGGGTCCCTTTGCCTTCTTCTCTTTATCCCACATAATCCCTCACCGCGTTCGGCCACTACTCCTACTCTATCTCAATTATTGATTCTAGTGAGTGGACCACTCTTACCAAATCTTTTCATTTTTTTGTGATTTTTCGCTCAGAATTTTAATCAATTTTATTATTTTCAGTTCTGTTATGGTTTCAAGCTCCGCAATGGCAAGAACATACGGAGACAAGCCGTCGACTTCTTCGATGGAAGAAGACTTGGAAATCGAGGTGTCAATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGACCCAAACAGCTAATATAAA</pcr_primer_p1>
		<pcr_primer_p2>GACTTTGATACGTTCATGAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GAGACCCAAACAGCTAATATAAATTTTCTTAGTGAGATTTTTCTCCGAATTATCAGAAAGATTTTATTTTTCATTTCACTAAATGTAAACTACCCCAACGTGTATAAAATGAAAGTGTAAATGAAAATCTTTAGCAGCTTTCAATCTCTCAAAATTAAATTTCCTTCCTTTTCCATTACACCCACTCATCGTCCTGAAAATACTGGGAAGTGATGGAAAAGTAAAATTGGATTCTCATGAACGTATCAAAGTC</canonical_amplicon>
		<polymorphic_amplicon>GAGACCCAAACAGCTAATATAAATTTTCTTAGTGAGATTTTTCTCCGAATTATCAGAAAGATTTTATTTTTCATTTCACTAAATGTAAACTACCCCAACGTGTATAAAATGAAAGTGTAAATGAAAATCTTTRGCAGCTTTCAATCTCTCAAAATTAAATTTCCTTCCTTTTCCATTACACCCACTCATCGTCCTGAAAATACTGGGAAGTGATGGAAAAGTAAAATTGGATTCTCATGAACGTATCAAAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19015</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>456059</contig_pos>
        <strand></strand>
        <context>TTTTGATTTc[T/G]tcgattcgag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AACTATGTGGAAAAGACTAGTAAACTTCCGGTGAGTATTTTTTTGATTTC</left_flank>
        <right_flank>TCGATTCGAGGATATTTGGAACAGACTTCTGAAAATTCCACAAATTCCGG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCCTTTCAGTTCCTCCGAAACTGCCATCTTCTTCCAACCTACTCCTACGAAATTCTCTCCCCTTGCTCCTGCGACTACCCAAAACCAGGAACTCCATGTGAAATCAAATTCGGCCGACGACAAGTCGTGTTAACTACACAAGACGAATTCGGAAACCCTAAGACCAGTCTATTCCGCGCTACTCGAATCCGAGTTTGGAGGATCACACAAATAATGGAGAAGATTTCCTTCCAATTCGAGTACCTGATGGCCAAAGACACTTTTGAGTGGATTACTCTGGACACTGATCAGGCAGGATTGAAATAAATTTGAGAAAAAAATAAGTTTTAAAAATTTCAGGCTATTTTGATGTCACTGCTTCTGCAATCGATTGGCTCTGAGATTCTATATGAGCATAACAATATGACGATTGAGCAGCAGGTGATGAAAGAAAAGCAATCAAAAGGAAACTATGTGGAAAAGACTAGTAAACTTCCGGTGAGTATTTTTTTGATTTCTTCGATTCGAGGATATTTGGAACAGACTTCTGAAAATTCCACAAATTCCGGACATTTTTAGAAGAGTTCTTTGAAAAACTGAAAATTTGAAAAAAAAAATCAAAGTTTTTAAATGTTTCGAAAATCCAAAAGTTCGAAAGTTCGAGCCGAAACATTTACGAAGCTTTTTTTTCGGAATATTTTTTTTTTGGAATTAGAAAAAAATTGAAATTCCATAATTCCCAAAATCAGAAATTTCCAAATTTCCGAAAACTCTGAATAAAATTATTCCGAACATTCCTGAGCTTATTTTCAACTTTTGAAACTAAACTTTTTTTCAGAGAGATCCGAAAAAACCAATCATCGTTTTGAAAAATGCGGTCGAAGAGACGGATCCATTGGGAGTCATGGAACATTACCACAACTACAACAGGATGTTAACAACAATTTCTGTAAGTGGAACATTATGGTCTGTTTCAAAATACATACAGGTCTGCACGATAAGATATAGAAAAACGTATA</canonical>
            <polymorphic>TTGCCTTTCAGTTCCTCCGAAACTGCCATCTTCTTCCAACCTACTCCTACGAAATTCTCTCCCCTTGCTCCTGCGACTACCCAAAACCAGGAACTCCATGTGAAATCAAATTCGGCCGACGACAAGTCGTGTTAACTACACAAGACGAATTCGGAAACCCTAAGACCAGTCTATTCCGCGCTACTCGAATCCGAGTTTGGAGGATCACACAAATAATGGAGAAGATTTCCTTCCAATTCGAGTACCTGATGGCCAAAGACACTTTTGAGTGGATTACTCTGGACACTGATCAGGCAGGATTGAAATAAATTTGAGAAAAAAATAAGTTTTAAAAATTTCAGGCTATTTTGATGTCACTGCTTCTGCAATCGATTGGCTCTGAGATTCTATATGAGCATAACAATATGACGATTGAGCAGCAGGTGATGAAAGAAAAGCAATCAAAAGGAAACTATGTGGAAAAGACTAGTAAACTTCCGGTGAGTATTTTTTTGATTTCKTCGATTCGAGGATATTTGGAACAGACTTCTGAAAATTCCACAAATTCCGGACATTTTTAGAAGAGTTCTTTGAAAAACTGAAAATTTGAAAAAAAAAATCAAAGTTTTTAAATGTTTCGAAAATCCAAAAGTTCGAAAGTTCGAGCCGAAACATTTACGAAGCTTTTTTTTCGGAATATTTTTTTTTTGGAATTAGAAAAAAATTGAAATTCCATAATTCCCAAAATCAGAAATTTCCAAATTTCCGAAAACTCTGAATAAAATTATTCCGAACATTCCTGAGCTTATTTTCAACTTTTGAAACTAAACTTTTTTTCAGAGAGATCCGAAAAAACCAATCATCGTTTTGAAAAATGCGGTCGAAGAGACGGATCCATTGGGAGTCATGGAACATTACCACAACTACAACAGGATGTTAACAACAATTTCTGTAAGTGGAACATTATGGTCTGTTTCAAAATACATACAGGTCTGCACGATAAGATATAGAAAAACGTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGAAACTATGTGGAAAAGACT</pcr_primer_p1>
		<pcr_primer_p2>TTTCGGATCTCTCTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>387</pcr_amplicon_size>
		<canonical_amplicon>AAGGAAACTATGTGGAAAAGACTAGTAAACTTCCGGTGAGTATTTTTTTGATTTCTTCGATTCGAGGATATTTGGAACAGACTTCTGAAAATTCCACAAATTCCGGACATTTTTAGAAGAGTTCTTTGAAAAACTGAAAATTTGAAAAAAAAAATCAAAGTTTTTAAATGTTTCGAAAATCCAAAAGTTCGAAAGTTCGAGCCGAAACATTTACGAAGCTTTTTTTTCGGAATATTTTTTTTTTGGAATTAGAAAAAAATTGAAATTCCATAATTCCCAAAATCAGAAATTTCCAAATTTCCGAAAACTCTGAATAAAATTATTCCGAACATTCCTGAGCTTATTTTCAACTTTTGAAACTAAACTTTTTTTCAGAGAGATCCGAAA</canonical_amplicon>
		<polymorphic_amplicon>AAGGAAACTATGTGGAAAAGACTAGTAAACTTCCGGTGAGTATTTTTTTGATTTCKTCGATTCGAGGATATTTGGAACAGACTTCTGAAAATTCCACAAATTCCGGACATTTTTAGAAGAGTTCTTTGAAAAACTGAAAATTTGAAAAAAAAAATCAAAGTTTTTAAATGTTTCGAAAATCCAAAAGTTCGAAAGTTCGAGCCGAAACATTTACGAAGCTTTTTTTTCGGAATATTTTTTTTTTGGAATTAGAAAAAAATTGAAATTCCATAATTCCCAAAATCAGAAATTTCCAAATTTCCGAAAACTCTGAATAAAATTATTCCGAACATTCCTGAGCTTATTTTCAACTTTTGAAACTAAACTTTTTTTCAGAGAGATCCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19016</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>464612</contig_pos>
        <strand>+</strand>
        <context>TTCTGTGTTA[C/G]AGAATTCTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATAGAATTCCACAATGTTCAAAAAAAGAATGCATGTTTCTTTCTGTGTTA</left_flank>
        <right_flank>AGAATTCTGATAAGTCAATATCTGCGCTAAAAATTATACAAAGTTCAGAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTATTCTACTGAAAATTACAAAAACAAAAATCCCATTATATGGGAAACTAATCCGTTGGAACTAACACGAAAAACGACACAGACTGTCAAAAACATCTCCAAAAAATGTAAAGTGTATTCCCGTTGTCACCTGCACCTAGAAAAAAAAGAAGTGAAAGAAAAGCGGACCCGGGTGGTGTGCGTAGTTTTCAGTGTCACCACCCTCCCCCCGTGTTTCTTGTACTACGCCAAAAAATGTGTTTGACATTGAAAAAAGATCAAGCGCGCCGATATATCCGCATTTTCTTGCCCCTGCTTGGTGTGTAGACCCTGGGGGAGATGGAGGGGTAACATCGTATGTCTCAGTTAACAACATCTGAATTGATTATGCAAAAAAATTTGTCGGATCGAGGGGAGAGGAATAGATAAAGCAAATTCTTCAGGCAGATAATTTTTGTTTTCTTGAAATATAGAATTCCACAATGTTCAAAAAAAGAATGCATGTTTCTTTCTGTGTTAGAGAATTCTGATAAGTCAATATCTGCGCTAAAAATTATACAAAGTTCAGAGGACACTTGAAAAATTACAGCCCGCCCGGGTAAGCTCAGGGTTTTCAAATTTAAAAAAAGTTCCAAAATTTTAGAATATTGAAAATGAATATTTTTGAAGGCACTATGTTTTTTGCAAACTTTTCATCAGCCGAATTTTTTGAATTTTACTTTAAAAGAATTCATGAAAGTTTGAAATTGAGAAATACAGTACCTTATACAAAAATGTATTAACTTCGCGTCAATTTTAGGTTTTACCATTTTTGAGGGTCTGGAGCTCGGCTCTCAAGTTTCCGATCACTTTGGAAATCTAATTGGGTGTAAAACAGTCTTGAATTGCAAATTTTGCATTCACAGAATTTTCGGAGAATTCCTAATGTTTTTGGTGTTTGCCGATTTCGGAATAGCACACGTTTTTTTTTCATGTTTACATTAAAACACGGACCAAGGGGGGTATCCTTCAGAAACCAGC</canonical>
            <polymorphic>ACTATTCTACTGAAAATTACAAAAACAAAAATCCCATTATATGGGAAACTAATCCGTTGGAACTAACACGAAAAACGACACAGACTGTCAAAAACATCTCCAAAAAATGTAAAGTGTATTCCCGTTGTCACCTGCACCTAGAAAAAAAAGAAGTGAAAGAAAAGCGGACCCGGGTGGTGTGCGTAGTTTTCAGTGTCACCACCCTCCCCCCGTGTTTCTTGTACTACGCCAAAAAATGTGTTTGACATTGAAAAAAGATCAAGCGCGCCGATATATCCGCATTTTCTTGCCCCTGCTTGGTGTGTAGACCCTGGGGGAGATGGAGGGGTAACATCGTATGTCTCAGTTAACAACATCTGAATTGATTATGCAAAAAAATTTGTCGGATCGAGGGGAGAGGAATAGATAAAGCAAATTCTTCAGGCAGATAATTTTTGTTTTCTTGAAATATAGAATTCCACAATGTTCAAAAAAAGAATGCATGTTTCTTTCTGTGTTASAGAATTCTGATAAGTCAATATCTGCGCTAAAAATTATACAAAGTTCAGAGGACACTTGAAAAATTACAGCCCGCCCGGGTAAGCTCAGGGTTTTCAAATTTAAAAAAAGTTCCAAAATTTTAGAATATTGAAAATGAATATTTTTGAAGGCACTATGTTTTTTGCAAACTTTTCATCAGCCGAATTTTTTGAATTTTACTTTAAAAGAATTCATGAAAGTTTGAAATTGAGAAATACAGTACCTTATACAAAAATGTATTAACTTCGCGTCAATTTTAGGTTTTACCATTTTTGAGGGTCTGGAGCTCGGCTCTCAAGTTTCCGATCACTTTGGAAATCTAATTGGGTGTAAAACAGTCTTGAATTGCAAATTTTGCATTCACAGAATTTTCGGAGAATTCCTAATGTTTTTGGTGTTTGCCGATTTCGGAATAGCACACGTTTTTTTTTCATGTTTACATTAAAACACGGACCAAGGGGGGTATCCTTCAGAAACCAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGCAGATAATTTTTGTTTTCTT</pcr_primer_p1>
		<pcr_primer_p2>AAAACATAGTGCCTTCAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AGGCAGATAATTTTTGTTTTCTTGAAATATAGAATTCCACAATGTTCAAAAAAAGAATGCATGTTTCTTTCTGTGTTAGAGAATTCTGATAAGTCAATATCTGCGCTAAAAATTATACAAAGTTCAGAGGACACTTGAAAAATTACAGCCCGCCCGGGTAAGCTCAGGGTTTTCAAATTTAAAAAAAGTTCCAAAATTTTAGAATATTGAAAATGAATATTTTTGAAGGCACTATGTTTT</canonical_amplicon>
		<polymorphic_amplicon>AGGCAGATAATTTTTGTTTTCTTGAAATATAGAATTCCACAATGTTCAAAAAAAGAATGCATGTTTCTTTCTGTGTTASAGAATTCTGATAAGTCAATATCTGCGCTAAAAATTATACAAAGTTCAGAGGACACTTGAAAAATTACAGCCCGCCCGGGTAAGCTCAGGGTTTTCAAATTTAAAAAAAGTTCCAAAATTTTAGAATATTGAAAATGAATATTTTTGAAGGCACTATGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19017</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>464450</contig_pos>
        <strand>+</strand>
        <context>GTAACATCGT[A/G]TGTCTCAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCCCCTGCTTGGTGTGTAGACCCTGGGGGAGATGGAGGGGTAACATCGT</left_flank>
        <right_flank>TGTCTCAGTTAACAACATCTGAATTGATTATGCAAAAAAATTTGTCGGAT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGACTGATGAAAAAAAAGACACGAAAGTTTTTGAAATTAGCATATTGGTCACAAGTGGGCTGAATAAATTGAATATGACACTACAAAGACCTGAAAAAATGTCATTTCATGAATCCTAGTTTATCGAGTTGTGCTTATCGAAATATTAGCAAACTACACGTACTATTCTACTGAAAATTACAAAAACAAAAATCCCATTATATGGGAAACTAATCCGTTGGAACTAACACGAAAAACGACACAGACTGTCAAAAACATCTCCAAAAAATGTAAAGTGTATTCCCGTTGTCACCTGCACCTAGAAAAAAAAGAAGTGAAAGAAAAGCGGACCCGGGTGGTGTGCGTAGTTTTCAGTGTCACCACCCTCCCCCCGTGTTTCTTGTACTACGCCAAAAAATGTGTTTGACATTGAAAAAAGATCAAGCGCGCCGATATATCCGCATTTTCTTGCCCCTGCTTGGTGTGTAGACCCTGGGGGAGATGGAGGGGTAACATCGTATGTCTCAGTTAACAACATCTGAATTGATTATGCAAAAAAATTTGTCGGATCGAGGGGAGAGGAATAGATAAAGCAAATTCTTCAGGCAGATAATTTTTGTTTTCTTGAAATATAGAATTCCACAATGTTCAAAAAAAGAATGCATGTTTCTTTCTGTGTTAGAGAATTCTGATAAGTCAATATCTGCGCTAAAAATTATACAAAGTTCAGAGGACACTTGAAAAATTACAGCCCGCCCGGGTAAGCTCAGGGTTTTCAAATTTAAAAAAAGTTCCAAAATTTTAGAATATTGAAAATGAATATTTTTGAAGGCACTATGTTTTTTGCAAACTTTTCATCAGCCGAATTTTTTGAATTTTACTTTAAAAGAATTCATGAAAGTTTGAAATTGAGAAATACAGTACCTTATACAAAAATGTATTAACTTCGCGTCAATTTTAGGTTTTACCATTTTTGAGGGTCTGGAGCTCGGCTCTCAAGTTTCCGATCACTTTGGAAAT</canonical>
            <polymorphic>TCGACTGATGAAAAAAAAGACACGAAAGTTTTTGAAATTAGCATATTGGTCACAAGTGGGCTGAATAAATTGAATATGACACTACAAAGACCTGAAAAAATGTCATTTCATGAATCCTAGTTTATCGAGTTGTGCTTATCGAAATATTAGCAAACTACACGTACTATTCTACTGAAAATTACAAAAACAAAAATCCCATTATATGGGAAACTAATCCGTTGGAACTAACACGAAAAACGACACAGACTGTCAAAAACATCTCCAAAAAATGTAAAGTGTATTCCCGTTGTCACCTGCACCTAGAAAAAAAAGAAGTGAAAGAAAAGCGGACCCGGGTGGTGTGCGTAGTTTTCAGTGTCACCACCCTCCCCCCGTGTTTCTTGTACTACGCCAAAAAATGTGTTTGACATTGAAAAAAGATCAAGCGCGCCGATATATCCGCATTTTCTTGCCCCTGCTTGGTGTGTAGACCCTGGGGGAGATGGAGGGGTAACATCGTRTGTCTCAGTTAACAACATCTGAATTGATTATGCAAAAAAATTTGTCGGATCGAGGGGAGAGGAATAGATAAAGCAAATTCTTCAGGCAGATAATTTTTGTTTTCTTGAAATATAGAATTCCACAATGTTCAAAAAAAGAATGCATGTTTCTTTCTGTGTTAGAGAATTCTGATAAGTCAATATCTGCGCTAAAAATTATACAAAGTTCAGAGGACACTTGAAAAATTACAGCCCGCCCGGGTAAGCTCAGGGTTTTCAAATTTAAAAAAAGTTCCAAAATTTTAGAATATTGAAAATGAATATTTTTGAAGGCACTATGTTTTTTGCAAACTTTTCATCAGCCGAATTTTTTGAATTTTACTTTAAAAGAATTCATGAAAGTTTGAAATTGAGAAATACAGTACCTTATACAAAAATGTATTAACTTCGCGTCAATTTTAGGTTTTACCATTTTTGAGGGTCTGGAGCTCGGCTCTCAAGTTTCCGATCACTTTGGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTGCGTAGTTTTCAGTGTC</pcr_primer_p1>
		<pcr_primer_p2>CCTGAAGAATTTGCTTTATCTATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTGTGCGTAGTTTTCAGTGTCACCACCCTCCCCCCGTGTTTCTTGTACTACGCCAAAAAATGTGTTTGACATTGAAAAAAGATCAAGCGCGCCGATATATCCGCATTTTCTTGCCCCTGCTTGGTGTGTAGACCCTGGGGGAGATGGAGGGGTAACATCGTATGTCTCAGTTAACAACATCTGAATTGATTATGCAAAAAAATTTGTCGGATCGAGGGGAGAGGAATAGATAAAGCAAATTCTTCAGG</canonical_amplicon>
		<polymorphic_amplicon>GTGTGCGTAGTTTTCAGTGTCACCACCCTCCCCCCGTGTTTCTTGTACTACGCCAAAAAATGTGTTTGACATTGAAAAAAGATCAAGCGCGCCGATATATCCGCATTTTCTTGCCCCTGCTTGGTGTGTAGACCCTGGGGGAGATGGAGGGGTAACATCGTRTGTCTCAGTTAACAACATCTGAATTGATTATGCAAAAAAATTTGTCGGATCGAGGGGAGAGGAATAGATAAAGCAAATTCTTCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19018</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>470081</contig_pos>
        <strand>+</strand>
        <context>CTTTCTGTGT[C/T]GTCCTAACAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGACTCAACGTTCATTCTTAATGACAACAAATCTCGCACTTTCTGTGT</left_flank>
        <right_flank>GTCCTAACATCACAAAGCTAAGATCACATTTTGCTCGACACTATGTGTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGCATTCACGGAATTTTCTTGGAATTTTCAGTTTTCAGCAGCTGGAGAACTAAAAATTAAAAAAAAATTATGTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGAGGGACAAAATCGCGCCGCGCTTATGTAGACCATCGGTCGTCCGGCGCTGTACCCCTGAGCTGCCTGTCATGAGTTCAACTCCTCATGGGGGTTCTCTATGCAGAATATCAGGAAAACTTTTTTTTGGTATCTGGCCTCATTTAATGCAAATTTTTCTATCCAGGTCTGTTTAACACTCTCCAAATTGTTCAACGTAATTGGTAACTTAACAGCCAAGCTCCAGACTCCTGAATATGATCACAATAGCCGAAAATCAACTGATAGACATGTTGAAATCTAATTTCAACGATTTTTAGCTTTTTCCGATTTCTATGATATCATTTTTCACCCTTCTTTGACTCAACGTTCATTCTTAATGACAACAAATCTCGCACTTTCTGTGTCGTCCTAACATCACAAAGCTAAGATCACATTTTGCTCGACACTATGTGTAACCCCACGTGACGACACTGCAGACTAACAGTGTAATATCTCTGTTTTTGATGAATGAGTCCTCTGGCACGTCATATCTGTGAAACAAAAGAAAAAAAATTACCTCTGGCTCCTCATCCGGTAAATGCATCTCATAGACATCTGATGAAAGTCGGTAGTTGATGGATTTCAGAGAGCTCAGCGCGTTCTGGCATACCTGAGAAGGTTTGTGTTATACTTGTCGGCATGACGAATTTTCAATTATGCCGGCTCATAACTCGCTTCAGAATTGAAATTGTGGGCAAAACAAAACACTGGGTCATAGAGCACAGCAAGTTCTACAACCTCCAATAAAATGAAATCAGCATTTGAAGCAGTAACCGGGAGTGAGCCGGCATTTATTAGCTTGGTCGGGTAAACATTGCCGGTCCGGTTAAAAAATTGTTAATACCGCTTTTGGAGCTGGTCGATTC</canonical>
            <polymorphic>TGTGCATTCACGGAATTTTCTTGGAATTTTCAGTTTTCAGCAGCTGGAGAACTAAAAATTAAAAAAAAATTATGTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGAGGGACAAAATCGCGCCGCGCTTATGTAGACCATCGGTCGTCCGGCGCTGTACCCCTGAGCTGCCTGTCATGAGTTCAACTCCTCATGGGGGTTCTCTATGCAGAATATCAGGAAAACTTTTTTTTGGTATCTGGCCTCATTTAATGCAAATTTTTCTATCCAGGTCTGTTTAACACTCTCCAAATTGTTCAACGTAATTGGTAACTTAACAGCCAAGCTCCAGACTCCTGAATATGATCACAATAGCCGAAAATCAACTGATAGACATGTTGAAATCTAATTTCAACGATTTTTAGCTTTTTCCGATTTCTATGATATCATTTTTCACCCTTCTTTGACTCAACGTTCATTCTTAATGACAACAAATCTCGCACTTTCTGTGTYGTCCTAACATCACAAAGCTAAGATCACATTTTGCTCGACACTATGTGTAACCCCACGTGACGACACTGCAGACTAACAGTGTAATATCTCTGTTTTTGATGAATGAGTCCTCTGGCACGTCATATCTGTGAAACAAAAGAAAAAAAATTACCTCTGGCTCCTCATCCGGTAAATGCATCTCATAGACATCTGATGAAAGTCGGTAGTTGATGGATTTCAGAGAGCTCAGCGCGTTCTGGCATACCTGAGAAGGTTTGTGTTATACTTGTCGGCATGACGAATTTTCAATTATGCCGGCTCATAACTCGCTTCAGAATTGAAATTGTGGGCAAAACAAAACACTGGGTCATAGAGCACAGCAAGTTCTACAACCTCCAATAAAATGAAATCAGCATTTGAAGCAGTAACCGGGAGTGAGCCGGCATTTATTAGCTTGGTCGGGTAAACATTGCCGGTCCGGTTAAAAAATTGTTAATACCGCTTTTGGAGCTGGTCGATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTCAACGATTTTTAGCTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTTTGTTTCACAGATATGAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATTTCAACGATTTTTAGCTTTTTCCGATTTCTATGATATCATTTTTCACCCTTCTTTGACTCAACGTTCATTCTTAATGACAACAAATCTCGCACTTTCTGTGTCGTCCTAACATCACAAAGCTAAGATCACATTTTGCTCGACACTATGTGTAACCCCACGTGACGACACTGCAGACTAACAGTGTAATATCTCTGTTTTTGATGAATGAGTCCTCTGGCACGTCATATCTGTGAAACAAAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>AATTTCAACGATTTTTAGCTTTTTCCGATTTCTATGATATCATTTTTCACCCTTCTTTGACTCAACGTTCATTCTTAATGACAACAAATCTCGCACTTTCTGTGTYGTCCTAACATCACAAAGCTAAGATCACATTTTGCTCGACACTATGTGTAACCCCACGTGACGACACTGCAGACTAACAGTGTAATATCTCTGTTTTTGATGAATGAGTCCTCTGGCACGTCATATCTGTGAAACAAAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19019</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>470162</contig_pos>
        <strand>+</strand>
        <context>GACTAACAGT[G/T]TAATATCTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGCTCGACACTATGTGTAACCCCACGTGACGACACTGCAGACTAACAGT</left_flank>
        <right_flank>TAATATCTCTGTTTTTGATGAATGAGTCCTCTGGCACGTCATATCTGTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGAGGGACAAAATCGCGCCGCGCTTATGTAGACCATCGGTCGTCCGGCGCTGTACCCCTGAGCTGCCTGTCATGAGTTCAACTCCTCATGGGGGTTCTCTATGCAGAATATCAGGAAAACTTTTTTTTGGTATCTGGCCTCATTTAATGCAAATTTTTCTATCCAGGTCTGTTTAACACTCTCCAAATTGTTCAACGTAATTGGTAACTTAACAGCCAAGCTCCAGACTCCTGAATATGATCACAATAGCCGAAAATCAACTGATAGACATGTTGAAATCTAATTTCAACGATTTTTAGCTTTTTCCGATTTCTATGATATCATTTTTCACCCTTCTTTGACTCAACGTTCATTCTTAATGACAACAAATCTCGCACTTTCTGTGTCGTCCTAACATCACAAAGCTAAGATCACATTTTGCTCGACACTATGTGTAACCCCACGTGACGACACTGCAGACTAACAGTGTAATATCTCTGTTTTTGATGAATGAGTCCTCTGGCACGTCATATCTGTGAAACAAAAGAAAAAAAATTACCTCTGGCTCCTCATCCGGTAAATGCATCTCATAGACATCTGATGAAAGTCGGTAGTTGATGGATTTCAGAGAGCTCAGCGCGTTCTGGCATACCTGAGAAGGTTTGTGTTATACTTGTCGGCATGACGAATTTTCAATTATGCCGGCTCATAACTCGCTTCAGAATTGAAATTGTGGGCAAAACAAAACACTGGGTCATAGAGCACAGCAAGTTCTACAACCTCCAATAAAATGAAATCAGCATTTGAAGCAGTAACCGGGAGTGAGCCGGCATTTATTAGCTTGGTCGGGTAAACATTGCCGGTCCGGTTAAAAAATTGTTAATACCGCTTTTGGAGCTGGTCGATTCTCATTGGAGGTTGTAGAGCTTCCAAAGGTTCATTATCTGGCATGCTGTTTTGCTCACATTCTGTATTTTTATGAGAATTAT</canonical>
            <polymorphic>AGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGAGGGACAAAATCGCGCCGCGCTTATGTAGACCATCGGTCGTCCGGCGCTGTACCCCTGAGCTGCCTGTCATGAGTTCAACTCCTCATGGGGGTTCTCTATGCAGAATATCAGGAAAACTTTTTTTTGGTATCTGGCCTCATTTAATGCAAATTTTTCTATCCAGGTCTGTTTAACACTCTCCAAATTGTTCAACGTAATTGGTAACTTAACAGCCAAGCTCCAGACTCCTGAATATGATCACAATAGCCGAAAATCAACTGATAGACATGTTGAAATCTAATTTCAACGATTTTTAGCTTTTTCCGATTTCTATGATATCATTTTTCACCCTTCTTTGACTCAACGTTCATTCTTAATGACAACAAATCTCGCACTTTCTGTGTCGTCCTAACATCACAAAGCTAAGATCACATTTTGCTCGACACTATGTGTAACCCCACGTGACGACACTGCAGACTAACAGTKTAATATCTCTGTTTTTGATGAATGAGTCCTCTGGCACGTCATATCTGTGAAACAAAAGAAAAAAAATTACCTCTGGCTCCTCATCCGGTAAATGCATCTCATAGACATCTGATGAAAGTCGGTAGTTGATGGATTTCAGAGAGCTCAGCGCGTTCTGGCATACCTGAGAAGGTTTGTGTTATACTTGTCGGCATGACGAATTTTCAATTATGCCGGCTCATAACTCGCTTCAGAATTGAAATTGTGGGCAAAACAAAACACTGGGTCATAGAGCACAGCAAGTTCTACAACCTCCAATAAAATGAAATCAGCATTTGAAGCAGTAACCGGGAGTGAGCCGGCATTTATTAGCTTGGTCGGGTAAACATTGCCGGTCCGGTTAAAAAATTGTTAATACCGCTTTTGGAGCTGGTCGATTCTCATTGGAGGTTGTAGAGCTTCCAAAGGTTCATTATCTGGCATGCTGTTTTGCTCACATTCTGTATTTTTATGAGAATTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>210 140 129 87 68 65 60 46 36 25 16 15 14 14 14 14 13 9 8 7 6 4</canonical_bands>
                <polymorphic_bands>210 140 129 87 68 65 60 52 46 25 15 14 14 14 14 13 9 8 7 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTCAACGATTTTTAGCTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTTTGTTTCACAGATATGAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATTTCAACGATTTTTAGCTTTTTCCGATTTCTATGATATCATTTTTCACCCTTCTTTGACTCAACGTTCATTCTTAATGACAACAAATCTCGCACTTTCTGTGTCGTCCTAACATCACAAAGCTAAGATCACATTTTGCTCGACACTATGTGTAACCCCACGTGACGACACTGCAGACTAACAGTGTAATATCTCTGTTTTTGATGAATGAGTCCTCTGGCACGTCATATCTGTGAAACAAAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>AATTTCAACGATTTTTAGCTTTTTCCGATTTCTATGATATCATTTTTCACCCTTCTTTGACTCAACGTTCATTCTTAATGACAACAAATCTCGCACTTTCTGTGTCGTCCTAACATCACAAAGCTAAGATCACATTTTGCTCGACACTATGTGTAACCCCACGTGACGACACTGCAGACTAACAGTKTAATATCTCTGTTTTTGATGAATGAGTCCTCTGGCACGTCATATCTGTGAAACAAAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19020</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>480413</contig_pos>
        <strand></strand>
        <context>AAAAAAATCT[T/G]TAAAATTGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ACCTCCGGCGATACCCGCCATCTTATTCGGATAGAAACTGAAAAAAATCT</left_flank>
        <right_flank>TAAAATTGACAAGAAGAAGGAAGAAGACTAATCGGGAAAGCTAATAGAGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGATGGTTTCCAGTCTTTGTGCTCATCCAGAAGCGACAAGCAAACTGTTCCTGAAATTTTCAAATTGCCATATTGAAAATGAAACTTGGGCGGAAAGTACCTGATGGATAGACATTTGGGTGAAATAGTGGAGGCACGAATTTGCACTTTGGTGGAGTTGATGGGAAATCATCTTTGAAGACCATTCGAATCTAAGATTTGGATCGTTTGTCCGGAATTATTTTGTCCTACTTACTCGGTAGAGTCCACCCTCCCAGATGGTATCTTTTCTTCCAGGAATTGCACAGTCCCAGTTGAAGAGGTCCAAAGTTCCGTCTGCTTTCTTGGTTGGCTTGGCTATGAATCCGAATGGATGATCCTGGAATGTGTCAGATGAATAATACAAAAAATGTTAAAGTTTCGATTTTTCAATTACCTTTCTCCATAGTTTTCGCTCTTCTGCGAGACGACCTCCGGCGATACCCGCCATCTTATTCGGATAGAAACTGAAAAAAATCTTTAAAATTGACAAGAAGAAGGAAGAAGACTAATCGGGAAAGCTAATAGAGTTAAAAATTTGTTTTCTGTGTTCAAGCAAATTCATTAAATACTAAATAAAGTTAACACATTTACAGTGCCGGCCTTAAGTATATGAAAAAACATGTTTTTCAGTTGGTTTTTGACATTTTCAGGAGCCTGAAGCTCGGCTGTTAAGTGTCGGATTCCTTCGAAAATTCTGGAGGTTAACAGGCCTAGATTGAAAACAGTGCATTCACAGAAATTTTTGAAAATTCCTAGTTTTTCACTTAATCGCCATTTTCTAAATGACACCCTTTTTTGCCTAATTCCGTTCTGGAAAAGTGAAAAAACCAGGTGTCTTTCGGAAATCGGTAAATAACTGAAAAACTATAAGATATTTCAAAAAAAATTCTAAGAATGCGAATTTTTCAATCTAGATCTGTTAACCTCCAGTATTTTCAAAGAGATACGACACTTGACAGCCGAGATCTGAAAAAAGAC</canonical>
            <polymorphic>TTGATGGTTTCCAGTCTTTGTGCTCATCCAGAAGCGACAAGCAAACTGTTCCTGAAATTTTCAAATTGCCATATTGAAAATGAAACTTGGGCGGAAAGTACCTGATGGATAGACATTTGGGTGAAATAGTGGAGGCACGAATTTGCACTTTGGTGGAGTTGATGGGAAATCATCTTTGAAGACCATTCGAATCTAAGATTTGGATCGTTTGTCCGGAATTATTTTGTCCTACTTACTCGGTAGAGTCCACCCTCCCAGATGGTATCTTTTCTTCCAGGAATTGCACAGTCCCAGTTGAAGAGGTCCAAAGTTCCGTCTGCTTTCTTGGTTGGCTTGGCTATGAATCCGAATGGATGATCCTGGAATGTGTCAGATGAATAATACAAAAAATGTTAAAGTTTCGATTTTTCAATTACCTTTCTCCATAGTTTTCGCTCTTCTGCGAGACGACCTCCGGCGATACCCGCCATCTTATTCGGATAGAAACTGAAAAAAATCTKTAAAATTGACAAGAAGAAGGAAGAAGACTAATCGGGAAAGCTAATAGAGTTAAAAATTTGTTTTCTGTGTTCAAGCAAATTCATTAAATACTAAATAAAGTTAACACATTTACAGTGCCGGCCTTAAGTATATGAAAAAACATGTTTTTCAGTTGGTTTTTGACATTTTCAGGAGCCTGAAGCTCGGCTGTTAAGTGTCGGATTCCTTCGAAAATTCTGGAGGTTAACAGGCCTAGATTGAAAACAGTGCATTCACAGAAATTTTTGAAAATTCCTAGTTTTTCACTTAATCGCCATTTTCTAAATGACACCCTTTTTTGCCTAATTCCGTTCTGGAAAAGTGAAAAAACCAGGTGTCTTTCGGAAATCGGTAAATAACTGAAAAACTATAAGATATTTCAAAAAAAATTCTAAGAATGCGAATTTTTCAATCTAGATCTGTTAACCTCCAGTATTTTCAAAGAGATACGACACTTGACAGCCGAGATCTGAAAAAAGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>393 155 107 67 63 58 50 34 33 23 17</canonical_bands>
                <polymorphic_bands>393 157 155 67 63 58 34 33 23 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGAATCCGAATGGATGAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTAATGAATTTGCTTGAACAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATGAATCCGAATGGATGATCCTGGAATGTGTCAGATGAATAATACAAAAAATGTTAAAGTTTCGATTTTTCAATTACCTTTCTCCATAGTTTTCGCTCTTCTGCGAGACGACCTCCGGCGATACCCGCCATCTTATTCGGATAGAAACTGAAAAAAATCTTTAAAATTGACAAGAAGAAGGAAGAAGACTAATCGGGAAAGCTAATAGAGTTAAAAATTTGTTTTCTGTGTTCAAGCAAATTCATTAAAT</canonical_amplicon>
		<polymorphic_amplicon>TATGAATCCGAATGGATGATCCTGGAATGTGTCAGATGAATAATACAAAAAATGTTAAAGTTTCGATTTTTCAATTACCTTTCTCCATAGTTTTCGCTCTTCTGCGAGACGACCTCCGGCGATACCCGCCATCTTATTCGGATAGAAACTGAAAAAAATCTKTAAAATTGACAAGAAGAAGGAAGAAGACTAATCGGGAAAGCTAATAGAGTTAAAAATTTGTTTTCTGTGTTCAAGCAAATTCATTAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19021</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>519441</contig_pos>
        <strand></strand>
        <context>CTCAATTTTC[A/T]AAGCGTCTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTC</left_flank>
        <right_flank>AAGCGTCTTGCACTTGTTCGATTTTCAGAAAAAACATTTTTTTAATCTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTTGCACCACCGTCAAGAACGTTGTCTCCCTCTGGAAAACCTAATTTGTACCATAAACCCCAATTTCTATCCTTTAAAGAGTTGGATAATGTGGAAATATGTTCTATTCTTTTTTTACATCTTGTGAGATATCACATTTTTTCATAAAATCTAACCAAAAAAATTTCCCATTTTTTCTTCTCATTTAAATGTTTTTTCCCATCCGCTTCTTCTATTTCTCCTCTATATTTGATGATCCACGATTTGATTTCTATCACTTTTATTTTTTTCTCTCTTCCTGTAGTTGACCTATTATTCCTTCTAACTTTTTCCTGACCCTAATTACCTACTTAGGGGGCCATTATGACCTCAAGGTTTTCAATGACCCCTTCGTTGAGCAATGATCATCAACTAGACACAGCTTCTGTTTTTTCTCTTGTTTCTTTTTTGAACCTAATGTATGCAAAGAAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTTTCAGAAAAAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAAGAATAAATAATCTTAAAAGCAATTAAGGTAGCAAATGAAAGAGATCTAGCATTGGTCGGAGAGTGAAGTAGGCGTGGAGAAAGTGAAATGAGCAAGTTTCGATAAATTTACAGCATTATTATAAGGCTAAAGAAACATACTACAGCTATTCAAG</canonical>
            <polymorphic>GGCTTGCACCACCGTCAAGAACGTTGTCTCCCTCTGGAAAACCTAATTTGTACCATAAACCCCAATTTCTATCCTTTAAAGAGTTGGATAATGTGGAAATATGTTCTATTCTTTTTTTACATCTTGTGAGATATCACATTTTTTCATAAAATCTAACCAAAAAAATTTCCCATTTTTTCTTCTCATTTAAATGTTTTTTCCCATCCGCTTCTTCTATTTCTCCTCTATATTTGATGATCCACGATTTGATTTCTATCACTTTTATTTTTTTCTCTCTTCCTGTAGTTGACCTATTATTCCTTCTAACTTTTTCCTGACCCTAATTACCTACTTAGGGGGCCATTATGACCTCAAGGTTTTCAATGACCCCTTCGTTGAGCAATGATCATCAACTAGACACAGCTTCTGTTTTTTCTCTTGTTTCTTTTTTGAACCTAATGTATGCAAAGAAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCWAAGCGTCTTGCACTTGTTCGATTTTCAGAAAAAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAAGAATAAATAATCTTAAAAGCAATTAAGGTAGCAAATGAAAGAGATCTAGCATTGGTCGGAGAGTGAAGTAGGCGTGGAGAAAGTGAAATGAGCAAGTTTCGATAAATTTACAGCATTATTATAAGGCTAAAGAAACATACTACAGCTATTCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACCTAATGTATGCAAAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>GGAAGATGTACATAAAAACTGATG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GAACCTAATGTATGCAAAGAAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTTTCAGAAAAAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCC</canonical_amplicon>
		<polymorphic_amplicon>GAACCTAATGTATGCAAAGAAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCWAAGCGTCTTGCACTTGTTCGATTTTCAGAAAAAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19022</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>519472</contig_pos>
        <strand>+</strand>
        <context>ATTTTCAGAA[A/G]AAACATTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTTTCAGAA</left_flank>
        <right_flank>AAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTGGAAAACCTAATTTGTACCATAAACCCCAATTTCTATCCTTTAAAGAGTTGGATAATGTGGAAATATGTTCTATTCTTTTTTTACATCTTGTGAGATATCACATTTTTTCATAAAATCTAACCAAAAAAATTTCCCATTTTTTCTTCTCATTTAAATGTTTTTTCCCATCCGCTTCTTCTATTTCTCCTCTATATTTGATGATCCACGATTTGATTTCTATCACTTTTATTTTTTTCTCTCTTCCTGTAGTTGACCTATTATTCCTTCTAACTTTTTCCTGACCCTAATTACCTACTTAGGGGGCCATTATGACCTCAAGGTTTTCAATGACCCCTTCGTTGAGCAATGATCATCAACTAGACACAGCTTCTGTTTTTTCTCTTGTTTCTTTTTTGAACCTAATGTATGCAAAGAAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTTTCAGAAAAAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAAGAATAAATAATCTTAAAAGCAATTAAGGTAGCAAATGAAAGAGATCTAGCATTGGTCGGAGAGTGAAGTAGGCGTGGAGAAAGTGAAATGAGCAAGTTTCGATAAATTTACAGCATTATTATAAGGCTAAAGAAACATACTACAGCTATTCAAGCAGATGGTAGATATCGATCGTCGTCAGCTCT</canonical>
            <polymorphic>CTCTGGAAAACCTAATTTGTACCATAAACCCCAATTTCTATCCTTTAAAGAGTTGGATAATGTGGAAATATGTTCTATTCTTTTTTTACATCTTGTGAGATATCACATTTTTTCATAAAATCTAACCAAAAAAATTTCCCATTTTTTCTTCTCATTTAAATGTTTTTTCCCATCCGCTTCTTCTATTTCTCCTCTATATTTGATGATCCACGATTTGATTTCTATCACTTTTATTTTTTTCTCTCTTCCTGTAGTTGACCTATTATTCCTTCTAACTTTTTCCTGACCCTAATTACCTACTTAGGGGGCCATTATGACCTCAAGGTTTTCAATGACCCCTTCGTTGAGCAATGATCATCAACTAGACACAGCTTCTGTTTTTTCTCTTGTTTCTTTTTTGAACCTAATGTATGCAAAGAAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTTTCAGAARAAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAAGAATAAATAATCTTAAAAGCAATTAAGGTAGCAAATGAAAGAGATCTAGCATTGGTCGGAGAGTGAAGTAGGCGTGGAGAAAGTGAAATGAGCAAGTTTCGATAAATTTACAGCATTATTATAAGGCTAAAGAAACATACTACAGCTATTCAAGCAGATGGTAGATATCGATCGTCGTCAGCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACCTAATGTATGCAAAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>GGAAGATGTACATAAAAACTGATG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GAACCTAATGTATGCAAAGAAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTTTCAGAAAAAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCC</canonical_amplicon>
		<polymorphic_amplicon>GAACCTAATGTATGCAAAGAAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTTTCAGAARAAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19023</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>519523</contig_pos>
        <strand>+</strand>
        <context>TCAACCCTCT[C/T]ATTTGCAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCT</left_flank>
        <right_flank>ATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGGATAATGTGGAAATATGTTCTATTCTTTTTTTACATCTTGTGAGATATCACATTTTTTCATAAAATCTAACCAAAAAAATTTCCCATTTTTTCTTCTCATTTAAATGTTTTTTCCCATCCGCTTCTTCTATTTCTCCTCTATATTTGATGATCCACGATTTGATTTCTATCACTTTTATTTTTTTCTCTCTTCCTGTAGTTGACCTATTATTCCTTCTAACTTTTTCCTGACCCTAATTACCTACTTAGGGGGCCATTATGACCTCAAGGTTTTCAATGACCCCTTCGTTGAGCAATGATCATCAACTAGACACAGCTTCTGTTTTTTCTCTTGTTTCTTTTTTGAACCTAATGTATGCAAAGAAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTTTCAGAAAAAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAAGAATAAATAATCTTAAAAGCAATTAAGGTAGCAAATGAAAGAGATCTAGCATTGGTCGGAGAGTGAAGTAGGCGTGGAGAAAGTGAAATGAGCAAGTTTCGATAAATTTACAGCATTATTATAAGGCTAAAGAAACATACTACAGCTATTCAAGCAGATGGTAGATATCGATCGTCGTCAGCTCTTTGCAGAATCAGTGTCTCTCTGGCCAATCGTATTTGGCGCTGACGTTCGGC</canonical>
            <polymorphic>GTTGGATAATGTGGAAATATGTTCTATTCTTTTTTTACATCTTGTGAGATATCACATTTTTTCATAAAATCTAACCAAAAAAATTTCCCATTTTTTCTTCTCATTTAAATGTTTTTTCCCATCCGCTTCTTCTATTTCTCCTCTATATTTGATGATCCACGATTTGATTTCTATCACTTTTATTTTTTTCTCTCTTCCTGTAGTTGACCTATTATTCCTTCTAACTTTTTCCTGACCCTAATTACCTACTTAGGGGGCCATTATGACCTCAAGGTTTTCAATGACCCCTTCGTTGAGCAATGATCATCAACTAGACACAGCTTCTGTTTTTTCTCTTGTTTCTTTTTTGAACCTAATGTATGCAAAGAAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTTTCAGAAAAAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCTYATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAAGAATAAATAATCTTAAAAGCAATTAAGGTAGCAAATGAAAGAGATCTAGCATTGGTCGGAGAGTGAAGTAGGCGTGGAGAAAGTGAAATGAGCAAGTTTCGATAAATTTACAGCATTATTATAAGGCTAAAGAAACATACTACAGCTATTCAAGCAGATGGTAGATATCGATCGTCGTCAGCTCTTTGCAGAATCAGTGTCTCTCTGGCCAATCGTATTTGGCGCTGACGTTCGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACCTAATGTATGCAAAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>GGAAGATGTACATAAAAACTGATG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GAACCTAATGTATGCAAAGAAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTTTCAGAAAAAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCC</canonical_amplicon>
		<polymorphic_amplicon>GAACCTAATGTATGCAAAGAAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTTTCAGAAAAAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCTYATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19024</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>519556</contig_pos>
        <strand></strand>
        <context>CTTCTGTACT[C/T]YYTGACCACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACT</left_flank>
        <right_flank>CGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTAC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTACATCTTGTGAGATATCACATTTTTTCATAAAATCTAACCAAAAAAATTTCCCATTTTTTCTTCTCATTTAAATGTTTTTTCCCATCCGCTTCTTCTATTTCTCCTCTATATTTGATGATCCACGATTTGATTTCTATCACTTTTATTTTTTTCTCTCTTCCTGTAGTTGACCTATTATTCCTTCTAACTTTTTCCTGACCCTAATTACCTACTTAGGGGGCCATTATGACCTCAAGGTTTTCAATGACCCCTTCGTTGAGCAATGATCATCAACTAGACACAGCTTCTGTTTTTTCTCTTGTTTCTTTTTTGAACCTAATGTATGCAAAGAAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTTTCAGAAAAAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAAGAATAAATAATCTTAAAAGCAATTAAGGTAGCAAATGAAAGAGATCTAGCATTGGTCGGAGAGTGAAGTAGGCGTGGAGAAAGTGAAATGAGCAAGTTTCGATAAATTTACAGCATTATTATAAGGCTAAAGAAACATACTACAGCTATTCAAGCAGATGGTAGATATCGATCGTCGTCAGCTCTTTGCAGAATCAGTGTCTCTCTGGCCAATCGTATTTGGCGCTGACGTTCGGCACGTTTTTGTCGTAATCGTTTTCCACCGAGGAC</canonical>
            <polymorphic>TTTACATCTTGTGAGATATCACATTTTTTCATAAAATCTAACCAAAAAAATTTCCCATTTTTTCTTCTCATTTAAATGTTTTTTCCCATCCGCTTCTTCTATTTCTCCTCTATATTTGATGATCCACGATTTGATTTCTATCACTTTTATTTTTTTCTCTCTTCCTGTAGTTGACCTATTATTCCTTCTAACTTTTTCCTGACCCTAATTACCTACTTAGGGGGCCATTATGACCTCAAGGTTTTCAATGACCCCTTCGTTGAGCAATGATCATCAACTAGACACAGCTTCTGTTTTTTCTCTTGTTTCTTTTTTGAACCTAATGTATGCAAAGAAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTTTCAGAAAAAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTYCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAAGAATAAATAATCTTAAAAGCAATTAAGGTAGCAAATGAAAGAGATCTAGCATTGGTCGGAGAGTGAAGTAGGCGTGGAGAAAGTGAAATGAGCAAGTTTCGATAAATTTACAGCATTATTATAAGGCTAAAGAAACATACTACAGCTATTCAAGCAGATGGTAGATATCGATCGTCGTCAGCTCTTTGCAGAATCAGTGTCTCTCTGGCCAATCGTATTTGGCGCTGACGTTCGGCACGTTTTTGTCGTAATCGTTTTCCACCGAGGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCATTGTATTTCAACCCTCT</pcr_primer_p1>
		<pcr_primer_p2>TTTACATTTTCCCAGTTTCACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAA</canonical_amplicon>
		<polymorphic_amplicon>CATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTYCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19025</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>519557</contig_pos>
        <strand>+</strand>
        <context>TTCTGTACTY[C/T]YTGACCACAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTC</left_flank>
        <right_flank>GTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTACATCTTGTGAGATATCACATTTTTTCATAAAATCTAACCAAAAAAATTTCCCATTTTTTCTTCTCATTTAAATGTTTTTTCCCATCCGCTTCTTCTATTTCTCCTCTATATTTGATGATCCACGATTTGATTTCTATCACTTTTATTTTTTTCTCTCTTCCTGTAGTTGACCTATTATTCCTTCTAACTTTTTCCTGACCCTAATTACCTACTTAGGGGGCCATTATGACCTCAAGGTTTTCAATGACCCCTTCGTTGAGCAATGATCATCAACTAGACACAGCTTCTGTTTTTTCTCTTGTTTCTTTTTTGAACCTAATGTATGCAAAGAAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTTTCAGAAAAAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAAGAATAAATAATCTTAAAAGCAATTAAGGTAGCAAATGAAAGAGATCTAGCATTGGTCGGAGAGTGAAGTAGGCGTGGAGAAAGTGAAATGAGCAAGTTTCGATAAATTTACAGCATTATTATAAGGCTAAAGAAACATACTACAGCTATTCAAGCAGATGGTAGATATCGATCGTCGTCAGCTCTTTGCAGAATCAGTGTCTCTCTGGCCAATCGTATTTGGCGCTGACGTTCGGCACGTTTTTGTCGTAATCGTTTTCCACCGAGGACA</canonical>
            <polymorphic>TTACATCTTGTGAGATATCACATTTTTTCATAAAATCTAACCAAAAAAATTTCCCATTTTTTCTTCTCATTTAAATGTTTTTTCCCATCCGCTTCTTCTATTTCTCCTCTATATTTGATGATCCACGATTTGATTTCTATCACTTTTATTTTTTTCTCTCTTCCTGTAGTTGACCTATTATTCCTTCTAACTTTTTCCTGACCCTAATTACCTACTTAGGGGGCCATTATGACCTCAAGGTTTTCAATGACCCCTTCGTTGAGCAATGATCATCAACTAGACACAGCTTCTGTTTTTTCTCTTGTTTCTTTTTTGAACCTAATGTATGCAAAGAAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTTTCAGAAAAAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCYGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAAGAATAAATAATCTTAAAAGCAATTAAGGTAGCAAATGAAAGAGATCTAGCATTGGTCGGAGAGTGAAGTAGGCGTGGAGAAAGTGAAATGAGCAAGTTTCGATAAATTTACAGCATTATTATAAGGCTAAAGAAACATACTACAGCTATTCAAGCAGATGGTAGATATCGATCGTCGTCAGCTCTTTGCAGAATCAGTGTCTCTCTGGCCAATCGTATTTGGCGCTGACGTTCGGCACGTTTTTGTCGTAATCGTTTTCCACCGAGGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCATTGTATTTCAACCCTCT</pcr_primer_p1>
		<pcr_primer_p2>TTTACATTTTCCCAGTTTCACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAA</canonical_amplicon>
		<polymorphic_amplicon>CATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCYGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19026</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>519572</contig_pos>
        <strand></strand>
        <context>CCACATCCAA[G/A]RGACCCAGCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAA</left_flank>
        <right_flank>CGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCACATTTTTTCATAAAATCTAACCAAAAAAATTTCCCATTTTTTCTTCTCATTTAAATGTTTTTTCCCATCCGCTTCTTCTATTTCTCCTCTATATTTGATGATCCACGATTTGATTTCTATCACTTTTATTTTTTTCTCTCTTCCTGTAGTTGACCTATTATTCCTTCTAACTTTTTCCTGACCCTAATTACCTACTTAGGGGGCCATTATGACCTCAAGGTTTTCAATGACCCCTTCGTTGAGCAATGATCATCAACTAGACACAGCTTCTGTTTTTTCTCTTGTTTCTTTTTTGAACCTAATGTATGCAAAGAAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTTTCAGAAAAAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAAGAATAAATAATCTTAAAAGCAATTAAGGTAGCAAATGAAAGAGATCTAGCATTGGTCGGAGAGTGAAGTAGGCGTGGAGAAAGTGAAATGAGCAAGTTTCGATAAATTTACAGCATTATTATAAGGCTAAAGAAACATACTACAGCTATTCAAGCAGATGGTAGATATCGATCGTCGTCAGCTCTTTGCAGAATCAGTGTCTCTCTGGCCAATCGTATTTGGCGCTGACGTTCGGCACGTTTTTGTCGTAATCGTTTTCCACCGAGGACAAGCATCACCAAGGTC</canonical>
            <polymorphic>TATCACATTTTTTCATAAAATCTAACCAAAAAAATTTCCCATTTTTTCTTCTCATTTAAATGTTTTTTCCCATCCGCTTCTTCTATTTCTCCTCTATATTTGATGATCCACGATTTGATTTCTATCACTTTTATTTTTTTCTCTCTTCCTGTAGTTGACCTATTATTCCTTCTAACTTTTTCCTGACCCTAATTACCTACTTAGGGGGCCATTATGACCTCAAGGTTTTCAATGACCCCTTCGTTGAGCAATGATCATCAACTAGACACAGCTTCTGTTTTTTCTCTTGTTTCTTTTTTGAACCTAATGTATGCAAAGAAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTTTCAGAAAAAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAARCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAAGAATAAATAATCTTAAAAGCAATTAAGGTAGCAAATGAAAGAGATCTAGCATTGGTCGGAGAGTGAAGTAGGCGTGGAGAAAGTGAAATGAGCAAGTTTCGATAAATTTACAGCATTATTATAAGGCTAAAGAAACATACTACAGCTATTCAAGCAGATGGTAGATATCGATCGTCGTCAGCTCTTTGCAGAATCAGTGTCTCTCTGGCCAATCGTATTTGGCGCTGACGTTCGGCACGTTTTTGTCGTAATCGTTTTCCACCGAGGACAAGCATCACCAAGGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCATTGTATTTCAACCCTCT</pcr_primer_p1>
		<pcr_primer_p2>TTTACATTTTCCCAGTTTCACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAA</canonical_amplicon>
		<polymorphic_amplicon>CATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAARCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19027</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>519614</contig_pos>
        <strand>+</strand>
        <context>TACATCTTCC[G/T]GTTTTTCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCC</left_flank>
        <right_flank>GTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCTTCTCATTTAAATGTTTTTTCCCATCCGCTTCTTCTATTTCTCCTCTATATTTGATGATCCACGATTTGATTTCTATCACTTTTATTTTTTTCTCTCTTCCTGTAGTTGACCTATTATTCCTTCTAACTTTTTCCTGACCCTAATTACCTACTTAGGGGGCCATTATGACCTCAAGGTTTTCAATGACCCCTTCGTTGAGCAATGATCATCAACTAGACACAGCTTCTGTTTTTTCTCTTGTTTCTTTTTTGAACCTAATGTATGCAAAGAAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTTTCAGAAAAAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAAGAATAAATAATCTTAAAAGCAATTAAGGTAGCAAATGAAAGAGATCTAGCATTGGTCGGAGAGTGAAGTAGGCGTGGAGAAAGTGAAATGAGCAAGTTTCGATAAATTTACAGCATTATTATAAGGCTAAAGAAACATACTACAGCTATTCAAGCAGATGGTAGATATCGATCGTCGTCAGCTCTTTGCAGAATCAGTGTCTCTCTGGCCAATCGTATTTGGCGCTGACGTTCGGCACGTTTTTGTCGTAATCGTTTTCCACCGAGGACAAGCATCACCAAGGTCAATACTGAAACTGACAGCAACAAACCCACTATTATGTAGCTG</canonical>
            <polymorphic>TTTTTCTTCTCATTTAAATGTTTTTTCCCATCCGCTTCTTCTATTTCTCCTCTATATTTGATGATCCACGATTTGATTTCTATCACTTTTATTTTTTTCTCTCTTCCTGTAGTTGACCTATTATTCCTTCTAACTTTTTCCTGACCCTAATTACCTACTTAGGGGGCCATTATGACCTCAAGGTTTTCAATGACCCCTTCGTTGAGCAATGATCATCAACTAGACACAGCTTCTGTTTTTTCTCTTGTTTCTTTTTTGAACCTAATGTATGCAAAGAAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTTTCAGAAAAAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCKGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAAGAATAAATAATCTTAAAAGCAATTAAGGTAGCAAATGAAAGAGATCTAGCATTGGTCGGAGAGTGAAGTAGGCGTGGAGAAAGTGAAATGAGCAAGTTTCGATAAATTTACAGCATTATTATAAGGCTAAAGAAACATACTACAGCTATTCAAGCAGATGGTAGATATCGATCGTCGTCAGCTCTTTGCAGAATCAGTGTCTCTCTGGCCAATCGTATTTGGCGCTGACGTTCGGCACGTTTTTGTCGTAATCGTTTTCCACCGAGGACAAGCATCACCAAGGTCAATACTGAAACTGACAGCAACAAACCCACTATTATGTAGCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCATTGTATTTCAACCCTCT</pcr_primer_p1>
		<pcr_primer_p2>TTTACATTTTCCCAGTTTCACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAA</canonical_amplicon>
		<polymorphic_amplicon>CATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCKGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19028</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>519657</contig_pos>
        <strand>+</strand>
        <context>CTCTGGAGTT[A/C]ATTTTTTCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTT</left_flank>
        <right_flank>ATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTCCTCTATATTTGATGATCCACGATTTGATTTCTATCACTTTTATTTTTTTCTCTCTTCCTGTAGTTGACCTATTATTCCTTCTAACTTTTTCCTGACCCTAATTACCTACTTAGGGGGCCATTATGACCTCAAGGTTTTCAATGACCCCTTCGTTGAGCAATGATCATCAACTAGACACAGCTTCTGTTTTTTCTCTTGTTTCTTTTTTGAACCTAATGTATGCAAAGAAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTTTCAGAAAAAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAAGAATAAATAATCTTAAAAGCAATTAAGGTAGCAAATGAAAGAGATCTAGCATTGGTCGGAGAGTGAAGTAGGCGTGGAGAAAGTGAAATGAGCAAGTTTCGATAAATTTACAGCATTATTATAAGGCTAAAGAAACATACTACAGCTATTCAAGCAGATGGTAGATATCGATCGTCGTCAGCTCTTTGCAGAATCAGTGTCTCTCTGGCCAATCGTATTTGGCGCTGACGTTCGGCACGTTTTTGTCGTAATCGTTTTCCACCGAGGACAAGCATCACCAAGGTCAATACTGAAACTGACAGCAACAAACCCACTATTATGTAGCTGACGACAGAAGTGGAAACTCTTTTGCCGAGGAGTTCGACGTACT</canonical>
            <polymorphic>TTTCTCCTCTATATTTGATGATCCACGATTTGATTTCTATCACTTTTATTTTTTTCTCTCTTCCTGTAGTTGACCTATTATTCCTTCTAACTTTTTCCTGACCCTAATTACCTACTTAGGGGGCCATTATGACCTCAAGGTTTTCAATGACCCCTTCGTTGAGCAATGATCATCAACTAGACACAGCTTCTGTTTTTTCTCTTGTTTCTTTTTTGAACCTAATGTATGCAAAGAAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTTTCAGAAAAAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTMATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAAGAATAAATAATCTTAAAAGCAATTAAGGTAGCAAATGAAAGAGATCTAGCATTGGTCGGAGAGTGAAGTAGGCGTGGAGAAAGTGAAATGAGCAAGTTTCGATAAATTTACAGCATTATTATAAGGCTAAAGAAACATACTACAGCTATTCAAGCAGATGGTAGATATCGATCGTCGTCAGCTCTTTGCAGAATCAGTGTCTCTCTGGCCAATCGTATTTGGCGCTGACGTTCGGCACGTTTTTGTCGTAATCGTTTTCCACCGAGGACAAGCATCACCAAGGTCAATACTGAAACTGACAGCAACAAACCCACTATTATGTAGCTGACGACAGAAGTGGAAACTCTTTTGCCGAGGAGTTCGACGTACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATCAGTTTTTATGTACATCTTC</pcr_primer_p1>
		<pcr_primer_p2>TGCTAGATCTCTTTCATTTGCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAAGAATAAATAATCTTAAAAGCAATTAAGGTAGCAAATGAAAGAGATCTAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTMATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAAGAATAAATAATCTTAAAAGCAATTAAGGTAGCAAATGAAAGAGATCTAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19029</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>519788</contig_pos>
        <strand>+</strand>
        <context>TGACTGAAAA[G/T]AATAAATAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAA</left_flank>
        <right_flank>AATAAATAATCTTAAAAGCAATTAAGGTAGCAAATGAAAGAGATCTAGCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTCAAGGTTTTCAATGACCCCTTCGTTGAGCAATGATCATCAACTAGACACAGCTTCTGTTTTTTCTCTTGTTTCTTTTTTGAACCTAATGTATGCAAAGAAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTTTCAGAAAAAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAAGAATAAATAATCTTAAAAGCAATTAAGGTAGCAAATGAAAGAGATCTAGCATTGGTCGGAGAGTGAAGTAGGCGTGGAGAAAGTGAAATGAGCAAGTTTCGATAAATTTACAGCATTATTATAAGGCTAAAGAAACATACTACAGCTATTCAAGCAGATGGTAGATATCGATCGTCGTCAGCTCTTTGCAGAATCAGTGTCTCTCTGGCCAATCGTATTTGGCGCTGACGTTCGGCACGTTTTTGTCGTAATCGTTTTCCACCGAGGACAAGCATCACCAAGGTCAATACTGAAACTGACAGCAACAAACCCACTATTATGTAGCTGACGACAGAAGTGGAAACTCTTTTGCCGAGGAGTTCGACGTACTGGAAAAAGTTTTGTATTGTTTCGGTTGTTTTTTTTTAAAGGTTTGACGTTTTTCTATTTTTAACTTAGAATAAGAAAATCGCAACTTTTTTAAAAGGGACTACTTTAATAATATTCTGTAGACTTGATTCC</canonical>
            <polymorphic>ACCTCAAGGTTTTCAATGACCCCTTCGTTGAGCAATGATCATCAACTAGACACAGCTTCTGTTTTTTCTCTTGTTTCTTTTTTGAACCTAATGTATGCAAAGAAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTTTCAGAAAAAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAAKAATAAATAATCTTAAAAGCAATTAAGGTAGCAAATGAAAGAGATCTAGCATTGGTCGGAGAGTGAAGTAGGCGTGGAGAAAGTGAAATGAGCAAGTTTCGATAAATTTACAGCATTATTATAAGGCTAAAGAAACATACTACAGCTATTCAAGCAGATGGTAGATATCGATCGTCGTCAGCTCTTTGCAGAATCAGTGTCTCTCTGGCCAATCGTATTTGGCGCTGACGTTCGGCACGTTTTTGTCGTAATCGTTTTCCACCGAGGACAAGCATCACCAAGGTCAATACTGAAACTGACAGCAACAAACCCACTATTATGTAGCTGACGACAGAAGTGGAAACTCTTTTGCCGAGGAGTTCGACGTACTGGAAAAAGTTTTGTATTGTTTCGGTTGTTTTTTTTTAAAGGTTTGACGTTTTTCTATTTTTAACTTAGAATAAGAAAATCGCAACTTTTTTAAAAGGGACTACTTTAATAATATTCTGTAGACTTGATTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCGGAAATAAAGGACAGT</pcr_primer_p1>
		<pcr_primer_p2>TATCTACCATCTGCTTGAATAGC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAAGAATAAATAATCTTAAAAGCAATTAAGGTAGCAAATGAAAGAGATCTAGCATTGGTCGGAGAGTGAAGTAGGCGTGGAGAAAGTGAAATGAGCAAGTTTCGATAAATTTACAGCATTATTATAAGGCTAAAGAAACATACTACAGCTATTCAAGCAGATGGTAGATA</canonical_amplicon>
		<polymorphic_amplicon>AAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAAKAATAAATAATCTTAAAAGCAATTAAGGTAGCAAATGAAAGAGATCTAGCATTGGTCGGAGAGTGAAGTAGGCGTGGAGAAAGTGAAATGAGCAAGTTTCGATAAATTTACAGCATTATTATAAGGCTAAAGAAACATACTACAGCTATTCAAGCAGATGGTAGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19030</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>519815</contig_pos>
        <strand>+</strand>
        <context>AGCAATTAAG[A/G]TAGCAAATGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTATCTAGTATTTGACTGAAAAGAATAAATAATCTTAAAAGCAATTAAG</left_flank>
        <right_flank>TAGCAAATGAAAGAGATCTAGCATTGGTCGGAGAGTGAAGTAGGCGTGGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAGCAATGATCATCAACTAGACACAGCTTCTGTTTTTTCTCTTGTTTCTTTTTTGAACCTAATGTATGCAAAGAAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTTTCAGAAAAAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAAGAATAAATAATCTTAAAAGCAATTAAGGTAGCAAATGAAAGAGATCTAGCATTGGTCGGAGAGTGAAGTAGGCGTGGAGAAAGTGAAATGAGCAAGTTTCGATAAATTTACAGCATTATTATAAGGCTAAAGAAACATACTACAGCTATTCAAGCAGATGGTAGATATCGATCGTCGTCAGCTCTTTGCAGAATCAGTGTCTCTCTGGCCAATCGTATTTGGCGCTGACGTTCGGCACGTTTTTGTCGTAATCGTTTTCCACCGAGGACAAGCATCACCAAGGTCAATACTGAAACTGACAGCAACAAACCCACTATTATGTAGCTGACGACAGAAGTGGAAACTCTTTTGCCGAGGAGTTCGACGTACTGGAAAAAGTTTTGTATTGTTTCGGTTGTTTTTTTTTAAAGGTTTGACGTTTTTCTATTTTTAACTTAGAATAAGAAAATCGCAACTTTTTTAAAAGGGACTACTTTAATAATATTCTGTAGACTTGATTCCGCATTTCGATTTTCCGGTTATATCAAT</canonical>
            <polymorphic>TTGAGCAATGATCATCAACTAGACACAGCTTCTGTTTTTTCTCTTGTTTCTTTTTTGAACCTAATGTATGCAAAGAAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTTTCAGAAAAAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAAGAATAAATAATCTTAAAAGCAATTAAGRTAGCAAATGAAAGAGATCTAGCATTGGTCGGAGAGTGAAGTAGGCGTGGAGAAAGTGAAATGAGCAAGTTTCGATAAATTTACAGCATTATTATAAGGCTAAAGAAACATACTACAGCTATTCAAGCAGATGGTAGATATCGATCGTCGTCAGCTCTTTGCAGAATCAGTGTCTCTCTGGCCAATCGTATTTGGCGCTGACGTTCGGCACGTTTTTGTCGTAATCGTTTTCCACCGAGGACAAGCATCACCAAGGTCAATACTGAAACTGACAGCAACAAACCCACTATTATGTAGCTGACGACAGAAGTGGAAACTCTTTTGCCGAGGAGTTCGACGTACTGGAAAAAGTTTTGTATTGTTTCGGTTGTTTTTTTTTAAAGGTTTGACGTTTTTCTATTTTTAACTTAGAATAAGAAAATCGCAACTTTTTTAAAAGGGACTACTTTAATAATATTCTGTAGACTTGATTCCGCATTTCGATTTTCCGGTTATATCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCGGAAATAAAGGACAGT</pcr_primer_p1>
		<pcr_primer_p2>TATCTACCATCTGCTTGAATAGC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAAGAATAAATAATCTTAAAAGCAATTAAGGTAGCAAATGAAAGAGATCTAGCATTGGTCGGAGAGTGAAGTAGGCGTGGAGAAAGTGAAATGAGCAAGTTTCGATAAATTTACAGCATTATTATAAGGCTAAAGAAACATACTACAGCTATTCAAGCAGATGGTAGATA</canonical_amplicon>
		<polymorphic_amplicon>AAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAAGAATAAATAATCTTAAAAGCAATTAAGRTAGCAAATGAAAGAGATCTAGCATTGGTCGGAGAGTGAAGTAGGCGTGGAGAAAGTGAAATGAGCAAGTTTCGATAAATTTACAGCATTATTATAAGGCTAAAGAAACATACTACAGCTATTCAAGCAGATGGTAGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19068</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>141595</contig_pos>
        <strand></strand>
        <context>taaaaaatta[A/T]ggcctgcyaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTCTAGGACTGTAAAATTTTTAGGTCTGTAAAACCTGTAAAAAATTA</left_flank>
        <right_flank>GGCCTGCCAAATTTTTAGGCCTTAAAAAGGGCCTTTTTAAAAGGCCTGTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGCGATGAGGTACTGTAGAAGCTGAGCAATCGACGATCGCTGATAGGGTTTCAGTTGGTCACACTCACGAAGACGGTCCCACAGGGCGAATTGGAGAGTGATCTGGAATTTTTTTCTGGAATTCGAAAATAGGCCTTTTTAGGCCTGACAAAATTTTAGGCCTGTAAAATTTTAGGCTTATAAATTTTTTAGGCCTGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTTAGGCCTGTAAAATTTTAGGCTTATAAATTTTTTAGGCCTGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTCTAGGACTGTAAAATTTTTAGGTCTGTAAAACCTGTAAAAAATTAAGGCCTGCCAAATTTTTAGGCCTTAAAAAGGGCCTTTTTAAAAGGCCTGTTCTGGTCTTCAAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAAAAAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCCCAAAACCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGCGTAGAATGCGTTGAACGTCTTCTCCTTCATCATCATCGCTATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAAGGGACCTAAAGTGACTCACCAACACTACAAAAGATGTGACGTCGAATCTCAGAATTCATGCCGGCCTTCGTCGCCAG</canonical>
            <polymorphic>TTTGCGATGAGGTACTGTAGAAGCTGAGCAATCGACGATCGCTGATAGGGTTTCAGTTGGTCACACTCACGAAGACGGTCCCACAGGGCGAATTGGAGAGTGATCTGGAATTTTTTTCTGGAATTCGAAAATAGGCCTTTTTAGGCCTGACAAAATTTTAGGCCTGTAAAATTTTAGGCTTATAAATTTTTTAGGCCTGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTTAGGCCTGTAAAATTTTAGGCTTATAAATTTTTTAGGCCTGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTCTAGGACTGTAAAATTTTTAGGTCTGTAAAACCTGTAAAAAATTAWGGCCTGCCAAATTTTTAGGCCTTAAAAAGGGCCTTTTTAAAAGGCCTGTTCTGGTCTTCAAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAAAAAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCCCAAAACCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGCGTAGAATGCGTTGAACGTCTTCTCCTTCATCATCATCGCTATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAAGGGACCTAAAGTGACTCACCAACACTACAAAAGATGTGACGTCGAATCTCAGAATTCATGCCGGCCTTCGTCGCCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGGCCT</site>
                <isoschizomers>
                    <enzyme>AatI</enzyme>
                    <enzyme>Eco147I</enzyme>
                    <enzyme>PceI</enzyme>
                    <enzyme>SseBI</enzyme>
                    <enzyme>StuI</enzyme>
                </isoschizomers>
                <canonical_bands>253 148 137 135 126 66 33 33 25 17 17 10</canonical_bands>
                <polymorphic_bands>253 148 143 137 135 66 33 33 25 17 10</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>253 137 135 66 66 66 60 33 33 33 33 25 17 17 16 10</canonical_bands>
                <polymorphic_bands>253 137 135 77 66 66 66 33 33 33 33 25 17 16 10</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>497 176 103 88 53 43 25 15</canonical_bands>
                <polymorphic_bands>522 176 103 88 53 43 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGACAAAATTTTAGGCCTGT</pcr_primer_p1>
		<pcr_primer_p2>AGGTACTTTTTGAAGACCAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>424</pcr_amplicon_size>
		<canonical_amplicon>CTGACAAAATTTTAGGCCTGTAAAATTTTAGGCTTATAAATTTTTTAGGCCTGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTTAGGCCTGTAAAATTTTAGGCTTATAAATTTTTTAGGCCTGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTCTAGGACTGTAAAATTTTTAGGTCTGTAAAACCTGTAAAAAATTAAGGCCTGCCAAATTTTTAGGCCTTAAAAAGGGCCTTTTTAAAAGGCCTGTTCTGGTCTTCAAAAAGTACCT</canonical_amplicon>
		<polymorphic_amplicon>CTGACAAAATTTTAGGCCTGTAAAATTTTAGGCTTATAAATTTTTTAGGCCTGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTTAGGCCTGTAAAATTTTAGGCTTATAAATTTTTTAGGCCTGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTCTAGGACTGTAAAATTTTTAGGTCTGTAAAACCTGTAAAAAATTAWGGCCTGCCAAATTTTTAGGCCTTAAAAAGGGCCTTTTTAAAAGGCCTGTTCTGGTCTTCAAAAAGTACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19069</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>141603</contig_pos>
        <strand></strand>
        <context>tawggcctgc[C/T]aaatttttag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGACTGTAAAATTTTTAGGTCTGTAAAACCTGTAAAAAATTAAGGCCTGC</left_flank>
        <right_flank>AAATTTTTAGGCCTTAAAAAGGGCCTTTTTAAAAGGCCTGTTCTGGTCTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGTACTGTAGAAGCTGAGCAATCGACGATCGCTGATAGGGTTTCAGTTGGTCACACTCACGAAGACGGTCCCACAGGGCGAATTGGAGAGTGATCTGGAATTTTTTTCTGGAATTCGAAAATAGGCCTTTTTAGGCCTGACAAAATTTTAGGCCTGTAAAATTTTAGGCTTATAAATTTTTTAGGCCTGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTTAGGCCTGTAAAATTTTAGGCTTATAAATTTTTTAGGCCTGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTCTAGGACTGTAAAATTTTTAGGTCTGTAAAACCTGTAAAAAATTAAGGCCTGCCAAATTTTTAGGCCTTAAAAAGGGCCTTTTTAAAAGGCCTGTTCTGGTCTTCAAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAAAAAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCCCAAAACCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGCGTAGAATGCGTTGAACGTCTTCTCCTTCATCATCATCGCTATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAAGGGACCTAAAGTGACTCACCAACACTACAAAAGATGTGACGTCGAATCTCAGAATTCATGCCGGCCTTCGTCGCCAGTGCGACGA</canonical>
            <polymorphic>GAGGTACTGTAGAAGCTGAGCAATCGACGATCGCTGATAGGGTTTCAGTTGGTCACACTCACGAAGACGGTCCCACAGGGCGAATTGGAGAGTGATCTGGAATTTTTTTCTGGAATTCGAAAATAGGCCTTTTTAGGCCTGACAAAATTTTAGGCCTGTAAAATTTTAGGCTTATAAATTTTTTAGGCCTGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTTAGGCCTGTAAAATTTTAGGCTTATAAATTTTTTAGGCCTGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTCTAGGACTGTAAAATTTTTAGGTCTGTAAAACCTGTAAAAAATTAAGGCCTGCYAAATTTTTAGGCCTTAAAAAGGGCCTTTTTAAAAGGCCTGTTCTGGTCTTCAAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAAAAAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCCCAAAACCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGCGTAGAATGCGTTGAACGTCTTCTCCTTCATCATCATCGCTATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAAGGGACCTAAAGTGACTCACCAACACTACAAAAGATGTGACGTCGAATCTCAGAATTCATGCCGGCCTTCGTCGCCAGTGCGACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGACAAAATTTTAGGCCTGT</pcr_primer_p1>
		<pcr_primer_p2>AGGTACTTTTTGAAGACCAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>424</pcr_amplicon_size>
		<canonical_amplicon>CTGACAAAATTTTAGGCCTGTAAAATTTTAGGCTTATAAATTTTTTAGGCCTGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTTAGGCCTGTAAAATTTTAGGCTTATAAATTTTTTAGGCCTGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTCTAGGACTGTAAAATTTTTAGGTCTGTAAAACCTGTAAAAAATTAAGGCCTGCCAAATTTTTAGGCCTTAAAAAGGGCCTTTTTAAAAGGCCTGTTCTGGTCTTCAAAAAGTACCT</canonical_amplicon>
		<polymorphic_amplicon>CTGACAAAATTTTAGGCCTGTAAAATTTTAGGCTTATAAATTTTTTAGGCCTGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTTAGGCCTGTAAAATTTTAGGCTTATAAATTTTTTAGGCCTGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTCTAGGACTGTAAAATTTTTAGGTCTGTAAAACCTGTAAAAAATTAAGGCCTGCYAAATTTTTAGGCCTTAAAAAGGGCCTTTTTAAAAGGCCTGTTCTGGTCTTCAAAAAGTACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19070</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>141699</contig_pos>
        <strand>+</strand>
        <context>TCTGGCTGAA[A/G]AAAAGGCCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCTTCAAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAA</left_flank>
        <right_flank>AAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCCCAAAACCCAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGAATTTTTTTCTGGAATTCGAAAATAGGCCTTTTTAGGCCTGACAAAATTTTAGGCCTGTAAAATTTTAGGCTTATAAATTTTTTAGGCCTGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTTAGGCCTGTAAAATTTTAGGCTTATAAATTTTTTAGGCCTGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTCTAGGACTGTAAAATTTTTAGGTCTGTAAAACCTGTAAAAAATTAAGGCCTGCCAAATTTTTAGGCCTTAAAAAGGGCCTTTTTAAAAGGCCTGTTCTGGTCTTCAAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAAAAAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCCCAAAACCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGCGTAGAATGCGTTGAACGTCTTCTCCTTCATCATCATCGCTATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAAGGGACCTAAAGTGACTCACCAACACTACAAAAGATGTGACGTCGAATCTCAGAATTCATGCCGGCCTTCGTCGCCAGTGCGACGACTTCTGGTGGGAATGACGTCGTCTTCTTGGGATTGGCGCCTGCGGCTGACGCCAGAAGGCCGTAGCCGCCTTGTTCGGGCAATCGGAATGCCGATC</canonical>
            <polymorphic>CTGGAATTTTTTTCTGGAATTCGAAAATAGGCCTTTTTAGGCCTGACAAAATTTTAGGCCTGTAAAATTTTAGGCTTATAAATTTTTTAGGCCTGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTTAGGCCTGTAAAATTTTAGGCTTATAAATTTTTTAGGCCTGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTCTAGGACTGTAAAATTTTTAGGTCTGTAAAACCTGTAAAAAATTAAGGCCTGCCAAATTTTTAGGCCTTAAAAAGGGCCTTTTTAAAAGGCCTGTTCTGGTCTTCAAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAARAAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCCCAAAACCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGCGTAGAATGCGTTGAACGTCTTCTCCTTCATCATCATCGCTATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAAGGGACCTAAAGTGACTCACCAACACTACAAAAGATGTGACGTCGAATCTCAGAATTCATGCCGGCCTTCGTCGCCAGTGCGACGACTTCTGGTGGGAATGACGTCGTCTTCTTGGGATTGGCGCCTGCGGCTGACGCCAGAAGGCCGTAGCCGCCTTGTTCGGGCAATCGGAATGCCGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTGGTCTTCAAAAAGTACCTA</pcr_primer_p1>
		<pcr_primer_p2>TTCGAACGTCTTCTGAAACT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TTCTGGTCTTCAAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAAAAAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCCCAAAACCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGCGTAGAATGCGTTGAACGTCTTCTCCTTCATCATCATCGCTATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAA</canonical_amplicon>
		<polymorphic_amplicon>TTCTGGTCTTCAAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAARAAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCCCAAAACCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGCGTAGAATGCGTTGAACGTCTTCTCCTTCATCATCATCGCTATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19071</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>141720</contig_pos>
        <strand>+</strand>
        <context>AAATAGGGCC[C/T]AAAAACAGCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGCCTTAAAATGACCAATTCTGGCTGAAAAAAAGGCCTAAAATAGGGCC</left_flank>
        <right_flank>AAAAACAGCCTAAAAGCCCCAAAACCCACCACAAATCTCCTATTAAATTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAAAATAGGCCTTTTTAGGCCTGACAAAATTTTAGGCCTGTAAAATTTTAGGCTTATAAATTTTTTAGGCCTGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTTAGGCCTGTAAAATTTTAGGCTTATAAATTTTTTAGGCCTGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTCTAGGACTGTAAAATTTTTAGGTCTGTAAAACCTGTAAAAAATTAAGGCCTGCCAAATTTTTAGGCCTTAAAAAGGGCCTTTTTAAAAGGCCTGTTCTGGTCTTCAAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAAAAAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCCCAAAACCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGCGTAGAATGCGTTGAACGTCTTCTCCTTCATCATCATCGCTATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAAGGGACCTAAAGTGACTCACCAACACTACAAAAGATGTGACGTCGAATCTCAGAATTCATGCCGGCCTTCGTCGCCAGTGCGACGACTTCTGGTGGGAATGACGTCGTCTTCTTGGGATTGGCGCCTGCGGCTGACGCCAGAAGGCCGTAGCCGCCTTGTTCGGGCAATCGGAATGCCGATCCGATGATCCACCTGAAATAGG</canonical>
            <polymorphic>CGAAAATAGGCCTTTTTAGGCCTGACAAAATTTTAGGCCTGTAAAATTTTAGGCTTATAAATTTTTTAGGCCTGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTTAGGCCTGTAAAATTTTAGGCTTATAAATTTTTTAGGCCTGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTCTAGGACTGTAAAATTTTTAGGTCTGTAAAACCTGTAAAAAATTAAGGCCTGCCAAATTTTTAGGCCTTAAAAAGGGCCTTTTTAAAAGGCCTGTTCTGGTCTTCAAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAAAAAAAGGCCTAAAATAGGGCCYAAAAACAGCCTAAAAGCCCCAAAACCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGCGTAGAATGCGTTGAACGTCTTCTCCTTCATCATCATCGCTATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAAGGGACCTAAAGTGACTCACCAACACTACAAAAGATGTGACGTCGAATCTCAGAATTCATGCCGGCCTTCGTCGCCAGTGCGACGACTTCTGGTGGGAATGACGTCGTCTTCTTGGGATTGGCGCCTGCGGCTGACGCCAGAAGGCCGTAGCCGCCTTGTTCGGGCAATCGGAATGCCGATCCGATGATCCACCTGAAATAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGGCCC</site>
                <isoschizomers>
                    <enzyme>ApaI</enzyme>
                    <enzyme>Bsp120I</enzyme>
                    <enzyme>PspOMI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>497 304 119 80</canonical_bands>
                <polymorphic_bands>801 119 80</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>404 272 200 91 33</canonical_bands>
                <polymorphic_bands>404 363 200 33</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>407 197 142 130 91 22 11</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGTACCTATTTTGGCCTTA</pcr_primer_p1>
		<pcr_primer_p2>CTTCGAACGTCTTCTGAAACT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAAAAAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCCCAAAACCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGCGTAGAATGCGTTGAACGTCTTCTCCTTCATCATCATCGCTATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAG</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAAAAAAAGGCCTAAAATAGGGCCYAAAAACAGCCTAAAAGCCCCAAAACCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGCGTAGAATGCGTTGAACGTCTTCTCCTTCATCATCATCGCTATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19072</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>141740</contig_pos>
        <strand></strand>
        <context>CTAAAAGCCC[C/T]AAAYCCCACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGGCTGAAAAAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCC</left_flank>
        <right_flank>AAAACCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGACAAAATTTTAGGCCTGTAAAATTTTAGGCTTATAAATTTTTTAGGCCTGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTTAGGCCTGTAAAATTTTAGGCTTATAAATTTTTTAGGCCTGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTCTAGGACTGTAAAATTTTTAGGTCTGTAAAACCTGTAAAAAATTAAGGCCTGCCAAATTTTTAGGCCTTAAAAAGGGCCTTTTTAAAAGGCCTGTTCTGGTCTTCAAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAAAAAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCCCAAAACCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGCGTAGAATGCGTTGAACGTCTTCTCCTTCATCATCATCGCTATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAAGGGACCTAAAGTGACTCACCAACACTACAAAAGATGTGACGTCGAATCTCAGAATTCATGCCGGCCTTCGTCGCCAGTGCGACGACTTCTGGTGGGAATGACGTCGTCTTCTTGGGATTGGCGCCTGCGGCTGACGCCAGAAGGCCGTAGCCGCCTTGTTCGGGCAATCGGAATGCCGATCCGATGATCCACCTGAAATAGGCCGATTTAAGCTATTGTAGG</canonical>
            <polymorphic>CCTGACAAAATTTTAGGCCTGTAAAATTTTAGGCTTATAAATTTTTTAGGCCTGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTTAGGCCTGTAAAATTTTAGGCTTATAAATTTTTTAGGCCTGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTCTAGGACTGTAAAATTTTTAGGTCTGTAAAACCTGTAAAAAATTAAGGCCTGCCAAATTTTTAGGCCTTAAAAAGGGCCTTTTTAAAAGGCCTGTTCTGGTCTTCAAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAAAAAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCCYAAAACCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGCGTAGAATGCGTTGAACGTCTTCTCCTTCATCATCATCGCTATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAAGGGACCTAAAGTGACTCACCAACACTACAAAAGATGTGACGTCGAATCTCAGAATTCATGCCGGCCTTCGTCGCCAGTGCGACGACTTCTGGTGGGAATGACGTCGTCTTCTTGGGATTGGCGCCTGCGGCTGACGCCAGAAGGCCGTAGCCGCCTTGTTCGGGCAATCGGAATGCCGATCCGATGATCCACCTGAAATAGGCCGATTTAAGCTATTGTAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGTACCTATTTTGGCCTTA</pcr_primer_p1>
		<pcr_primer_p2>CTTCGAACGTCTTCTGAAACT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAAAAAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCCCAAAACCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGCGTAGAATGCGTTGAACGTCTTCTCCTTCATCATCATCGCTATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAG</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAAAAAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCCYAAAACCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGCGTAGAATGCGTTGAACGTCTTCTCCTTCATCATCATCGCTATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19073</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>142098</contig_pos>
        <strand>+</strand>
        <context>GTCGCCAGTG[C/T]GACGACTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGATGTGACGTCGAATCTCAGAATTCATGCCGGCCTTCGTCGCCAGTG</left_flank>
        <right_flank>GACGACTTCTGGTGGGAATGACGTCGTCTTCTTGGGATTGGCGCCTGCGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGCCAAATTTTTAGGCCTTAAAAAGGGCCTTTTTAAAAGGCCTGTTCTGGTCTTCAAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAAAAAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCCCAAAACCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGCGTAGAATGCGTTGAACGTCTTCTCCTTCATCATCATCGCTATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAAGGGACCTAAAGTGACTCACCAACACTACAAAAGATGTGACGTCGAATCTCAGAATTCATGCCGGCCTTCGTCGCCAGTGCGACGACTTCTGGTGGGAATGACGTCGTCTTCTTGGGATTGGCGCCTGCGGCTGACGCCAGAAGGCCGTAGCCGCCTTGTTCGGGCAATCGGAATGCCGATCCGATGATCCACCTGAAATAGGCCGATTTAAGCTATTGTAGGCTTTTTTGAGGCTGATTTAGGCTATTCAAAGGCAGTATTAGGCCTTAAAAAAAGGCCCTTTTCAAATGATTTTTAAGTTAAAATATATTTCCCTAGACAATTTCAGGCCTTTTTAGGCTTTTCAGGCCAATTTAGACTTGTTAGGCTGGTTTAGGTTTTTAGGCCTATTTTAAGGCTTTTCAGGCTAGCTTAGGCCTTTTTACAGGTCGATTAAGGAACATTTTAAGGCTCGTAGGCTGATTCAGGCTTTTTAGGCTGATTTCATAAAATGTTACAGGTCTAAAAATTACAAGCCTAAAATCTTTACATACCTATATATTTTATAGGCCTAAAAACTTTTTCCTAGACAAATTAGGCC</canonical>
            <polymorphic>CTGCCAAATTTTTAGGCCTTAAAAAGGGCCTTTTTAAAAGGCCTGTTCTGGTCTTCAAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAAAAAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCCCAAAACCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGCGTAGAATGCGTTGAACGTCTTCTCCTTCATCATCATCGCTATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAAGGGACCTAAAGTGACTCACCAACACTACAAAAGATGTGACGTCGAATCTCAGAATTCATGCCGGCCTTCGTCGCCAGTGYGACGACTTCTGGTGGGAATGACGTCGTCTTCTTGGGATTGGCGCCTGCGGCTGACGCCAGAAGGCCGTAGCCGCCTTGTTCGGGCAATCGGAATGCCGATCCGATGATCCACCTGAAATAGGCCGATTTAAGCTATTGTAGGCTTTTTTGAGGCTGATTTAGGCTATTCAAAGGCAGTATTAGGCCTTAAAAAAAGGCCCTTTTCAAATGATTTTTAAGTTAAAATATATTTCCCTAGACAATTTCAGGCCTTTTTAGGCTTTTCAGGCCAATTTAGACTTGTTAGGCTGGTTTAGGTTTTTAGGCCTATTTTAAGGCTTTTCAGGCTAGCTTAGGCCTTTTTACAGGTCGATTAAGGAACATTTTAAGGCTCGTAGGCTGATTCAGGCTTTTTAGGCTGATTTCATAAAATGTTACAGGTCTAAAAATTACAAGCCTAAAATCTTTACATACCTATATATTTTATAGGCCTAAAAACTTTTTCCTAGACAAATTAGGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>474 308 156 29 22 11</canonical_bands>
                <polymorphic_bands>474 308 156 33 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAACACTACAAAAGATGTGAC</pcr_primer_p1>
		<pcr_primer_p2>AGAGGCCTAATTTGTCTAGGA</pcr_primer_p2>
		<pcr_amplicon_size>565</pcr_amplicon_size>
		<canonical_amplicon>CCAACACTACAAAAGATGTGACGTCGAATCTCAGAATTCATGCCGGCCTTCGTCGCCAGTGCGACGACTTCTGGTGGGAATG</canonical_amplicon>
		<polymorphic_amplicon>CCAACACTACAAAAGATGTGACGTCGAATCTCAGAATTCATGCCGGCCTTCGTCGCCAGTGYGACGACTTCTGGTGGGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19074</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>143691</contig_pos>
        <strand>+</strand>
        <context>AGGCTTTTTT[C/T]TAGGCTTATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACATTCGACGAAGTGGGCCGCTGAAAATAGGCGTTTACAGGCTTTTTT</left_flank>
        <right_flank>TAGGCTTATTTAGGCCGAAAATAGGCTTTTTAGGCCAAAAATATAAAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGGCTTTTGGTGGGGCCTTTTTTAGGCCTATCACCTCTTCCAGCAAAAATTTCGCACGTGGCAGTGCTGAAATCGGCTTTTTCTGAAAATCCGCGGCGATTTTATCGATTTTCGCAGTGATTTGTGGCCAGGCCGTCTTTTTGAGCGATTTATAGGCGTCTGAAAATGGGAAAATTTTTTAGGCTTTTTTAGGCCCTAAAACTCACAAGCAACAATAGTTCGGACTGCAAAAAGGTTGGTTAGATTCAAATTTCCCTCCAATTTTTCCACAATTTCAACGAGAATCGCTGGTTGGAGAATCTGCAAAACTACAGTAATCCTACAGTAAGCTACAGTAACCTAATTACCCGAAAAACGACTAAAAACGCCGTGAAAACTACACGATTCTCCATGGATTTGTCGTCGGGCTCCTCCGCGTCGGAAATCGATTTTACCAAGTCACAAAGGAAACATTCGACGAAGTGGGCCGCTGAAAATAGGCGTTTACAGGCTTTTTTCTAGGCTTATTTAGGCCGAAAATAGGCTTTTTAGGCCAAAAATATAAAAGTTTTTAGCCAAAAAAATTTTAGGCTTGTAAAATTTTTAAGGCCTGTAAAATTTTTAAGCCTGTAAAATTTCTAAGTTTGCAAAAAATGGTTCGGCTTGTAAAATTTTTTAGGCCTATCAAATTTCAAGGCTTAAAAAAATTTTAGGCCTGTCAAATTTTCAGGCTTGTAAAATTTTCAGGTCTGTAAAATTTTTAGACCTGCAACTGGCTCATTTTTCCGGGTTTTTAGGTCATTTTAATCCAATTTTAGGCCTTTTTAAACAATTTTTGGGTCATTTTCACCCGATTTTCAGCCAAATATCACTCACAAATCTCATTGCTAATCATTGTATGACACATCGTGATGAATGCTCCATATGTGGTGAGCAACGAGTCCTGCAGGCGGAATGGAGCCAGAAGAGCCTTTGATAGGCATTTGTAGAGTGCACTTTTGACATCTGAAAATAGGTAA</canonical>
            <polymorphic>AATGGCTTTTGGTGGGGCCTTTTTTAGGCCTATCACCTCTTCCAGCAAAAATTTCGCACGTGGCAGTGCTGAAATCGGCTTTTTCTGAAAATCCGCGGCGATTTTATCGATTTTCGCAGTGATTTGTGGCCAGGCCGTCTTTTTGAGCGATTTATAGGCGTCTGAAAATGGGAAAATTTTTTAGGCTTTTTTAGGCCCTAAAACTCACAAGCAACAATAGTTCGGACTGCAAAAAGGTTGGTTAGATTCAAATTTCCCTCCAATTTTTCCACAATTTCAACGAGAATCGCTGGTTGGAGAATCTGCAAAACTACAGTAATCCTACAGTAAGCTACAGTAACCTAATTACCCGAAAAACGACTAAAAACGCCGTGAAAACTACACGATTCTCCATGGATTTGTCGTCGGGCTCCTCCGCGTCGGAAATCGATTTTACCAAGTCACAAAGGAAACATTCGACGAAGTGGGCCGCTGAAAATAGGCGTTTACAGGCTTTTTTYTAGGCTTATTTAGGCCGAAAATAGGCTTTTTAGGCCAAAAATATAAAAGTTTTTAGCCAAAAAAATTTTAGGCTTGTAAAATTTTTAAGGCCTGTAAAATTTTTAAGCCTGTAAAATTTCTAAGTTTGCAAAAAATGGTTCGGCTTGTAAAATTTTTTAGGCCTATCAAATTTCAAGGCTTAAAAAAATTTTAGGCCTGTCAAATTTTCAGGCTTGTAAAATTTTCAGGTCTGTAAAATTTTTAGACCTGCAACTGGCTCATTTTTCCGGGTTTTTAGGTCATTTTAATCCAATTTTAGGCCTTTTTAAACAATTTTTGGGTCATTTTCACCCGATTTTCAGCCAAATATCACTCACAAATCTCATTGCTAATCATTGTATGACACATCGTGATGAATGCTCCATATGTGGTGAGCAACGAGTCCTGCAGGCGGAATGGAGCCAGAAGAGCCTTTGATAGGCATTTGTAGAGTGCACTTTTGACATCTGAAAATAGGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGTGAAAACTACACGATTC</pcr_primer_p1>
		<pcr_primer_p2>GCAATGAGATTTGTGAGTGATA</pcr_primer_p2>
		<pcr_amplicon_size>500</pcr_amplicon_size>
		<canonical_amplicon>CCGTGAAAACTACACGATTCTCCATGGATTTGTCGTCGGGCTCCTCCGCGTCGGAAATCGATTTTACCAAGTCACAAAGGAAACATTCGACGAAGTGGGCCGCTGAAAATAGGCGTTTACAGGCTTTTTTCTAGGCTTATTTAGGCCGAAAATAGGCTTTTTAGGCCAAAAATATAAAAGTTTTTAGCCAAAAAAATTTTAGGCTTGTAAAATTTTTAAGGCCTGTAAAATTTTTAAGCCTGTAAAATTTCTAAGTTTGCAAAAAATGGTTCGGCTTGTAAAATTTTTTAGGCCTATCAAATTTCAAGGCTTAAAAAAATTTTAGGCCTGTCAAATTTTCAGGCTTGTAAAATTTTCAGGTCTGTAAAATTTTTAGACCTGCAACTGGCTCATTTTTCCGGGTTTTTAGGTCATTTTAATCCAATTTTAGGCCTTTTTAAACAATTTTTGGGTCATTTTCACCCGATTTTCAGCCAAATATCACTCACAAATCTCATTGC</canonical_amplicon>
		<polymorphic_amplicon>CCGTGAAAACTACACGATTCTCCATGGATTTGTCGTCGGGCTCCTCCGCGTCGGAAATCGATTTTACCAAGTCACAAAGGAAACATTCGACGAAGTGGGCCGCTGAAAATAGGCGTTTACAGGCTTTTTTYTAGGCTTATTTAGGCCGAAAATAGGCTTTTTAGGCCAAAAATATAAAAGTTTTTAGCCAAAAAAATTTTAGGCTTGTAAAATTTTTAAGGCCTGTAAAATTTTTAAGCCTGTAAAATTTCTAAGTTTGCAAAAAATGGTTCGGCTTGTAAAATTTTTTAGGCCTATCAAATTTCAAGGCTTAAAAAAATTTTAGGCCTGTCAAATTTTCAGGCTTGTAAAATTTTCAGGTCTGTAAAATTTTTAGACCTGCAACTGGCTCATTTTTCCGGGTTTTTAGGTCATTTTAATCCAATTTTAGGCCTTTTTAAACAATTTTTGGGTCATTTTCACCCGATTTTCAGCCAAATATCACTCACAAATCTCATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19075</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>143678</contig_pos>
        <strand>+</strand>
        <context>AATAGGCGTT[G/T]ACAGGCTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAAGTCACAAAGGAAACATTCGACGAAGTGGGCCGCTGAAAATAGGCGTT</left_flank>
        <right_flank>ACAGGCTTTTTTCTAGGCTTATTTAGGCCGAAAATAGGCTTTTTAGGCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACTTCATAATCAATGGCTTTTGGTGGGGCCTTTTTTAGGCCTATCACCTCTTCCAGCAAAAATTTCGCACGTGGCAGTGCTGAAATCGGCTTTTTCTGAAAATCCGCGGCGATTTTATCGATTTTCGCAGTGATTTGTGGCCAGGCCGTCTTTTTGAGCGATTTATAGGCGTCTGAAAATGGGAAAATTTTTTAGGCTTTTTTAGGCCCTAAAACTCACAAGCAACAATAGTTCGGACTGCAAAAAGGTTGGTTAGATTCAAATTTCCCTCCAATTTTTCCACAATTTCAACGAGAATCGCTGGTTGGAGAATCTGCAAAACTACAGTAATCCTACAGTAAGCTACAGTAACCTAATTACCCGAAAAACGACTAAAAACGCCGTGAAAACTACACGATTCTCCATGGATTTGTCGTCGGGCTCCTCCGCGTCGGAAATCGATTTTACCAAGTCACAAAGGAAACATTCGACGAAGTGGGCCGCTGAAAATAGGCGTTTACAGGCTTTTTTCTAGGCTTATTTAGGCCGAAAATAGGCTTTTTAGGCCAAAAATATAAAAGTTTTTAGCCAAAAAAATTTTAGGCTTGTAAAATTTTTAAGGCCTGTAAAATTTTTAAGCCTGTAAAATTTCTAAGTTTGCAAAAAATGGTTCGGCTTGTAAAATTTTTTAGGCCTATCAAATTTCAAGGCTTAAAAAAATTTTAGGCCTGTCAAATTTTCAGGCTTGTAAAATTTTCAGGTCTGTAAAATTTTTAGACCTGCAACTGGCTCATTTTTCCGGGTTTTTAGGTCATTTTAATCCAATTTTAGGCCTTTTTAAACAATTTTTGGGTCATTTTCACCCGATTTTCAGCCAAATATCACTCACAAATCTCATTGCTAATCATTGTATGACACATCGTGATGAATGCTCCATATGTGGTGAGCAACGAGTCCTGCAGGCGGAATGGAGCCAGAAGAGCCTTTGATAGGCATTTGTAGAGTGCACTTTTGACATC</canonical>
            <polymorphic>CCACTTCATAATCAATGGCTTTTGGTGGGGCCTTTTTTAGGCCTATCACCTCTTCCAGCAAAAATTTCGCACGTGGCAGTGCTGAAATCGGCTTTTTCTGAAAATCCGCGGCGATTTTATCGATTTTCGCAGTGATTTGTGGCCAGGCCGTCTTTTTGAGCGATTTATAGGCGTCTGAAAATGGGAAAATTTTTTAGGCTTTTTTAGGCCCTAAAACTCACAAGCAACAATAGTTCGGACTGCAAAAAGGTTGGTTAGATTCAAATTTCCCTCCAATTTTTCCACAATTTCAACGAGAATCGCTGGTTGGAGAATCTGCAAAACTACAGTAATCCTACAGTAAGCTACAGTAACCTAATTACCCGAAAAACGACTAAAAACGCCGTGAAAACTACACGATTCTCCATGGATTTGTCGTCGGGCTCCTCCGCGTCGGAAATCGATTTTACCAAGTCACAAAGGAAACATTCGACGAAGTGGGCCGCTGAAAATAGGCGTTKACAGGCTTTTTTCTAGGCTTATTTAGGCCGAAAATAGGCTTTTTAGGCCAAAAATATAAAAGTTTTTAGCCAAAAAAATTTTAGGCTTGTAAAATTTTTAAGGCCTGTAAAATTTTTAAGCCTGTAAAATTTCTAAGTTTGCAAAAAATGGTTCGGCTTGTAAAATTTTTTAGGCCTATCAAATTTCAAGGCTTAAAAAAATTTTAGGCCTGTCAAATTTTCAGGCTTGTAAAATTTTCAGGTCTGTAAAATTTTTAGACCTGCAACTGGCTCATTTTTCCGGGTTTTTAGGTCATTTTAATCCAATTTTAGGCCTTTTTAAACAATTTTTGGGTCATTTTCACCCGATTTTCAGCCAAATATCACTCACAAATCTCATTGCTAATCATTGTATGACACATCGTGATGAATGCTCCATATGTGGTGAGCAACGAGTCCTGCAGGCGGAATGGAGCCAGAAGAGCCTTTGATAGGCATTTGTAGAGTGCACTTTTGACATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCTGCAAAACTACAGTAATCCT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGGCCTAAAAAGCCTAT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>AATCTGCAAAACTACAGTAATCCTACAGTAAGCTACAGTAACCTAATTACCCGAAAAACGACTAAAAACGCCGTGAAAACTACACGATTCTCCATGGATTTGTCGTCGGGCTCCTCCGCGTCGGAAATCGATTTTACCAAGTCACAAAGGAAACATTCGACGAAGTGGGCCGCTGAAAATAGGCGTTTACAGGCTTTTTTCTAGGCTTATTTAGGCCGAAAATAGGCTTTTTAGGCCAAAA</canonical_amplicon>
		<polymorphic_amplicon>AATCTGCAAAACTACAGTAATCCTACAGTAAGCTACAGTAACCTAATTACCCGAAAAACGACTAAAAACGCCGTGAAAACTACACGATTCTCCATGGATTTGTCGTCGGGCTCCTCCGCGTCGGAAATCGATTTTACCAAGTCACAAAGGAAACATTCGACGAAGTGGGCCGCTGAAAATAGGCGTTKACAGGCTTTTTTCTAGGCTTATTTAGGCCGAAAATAGGCTTTTTAGGCCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19076</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>143630</contig_pos>
        <strand>+</strand>
        <context>GATTTTACCA[A/G]GTCACAAAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCCATGGATTTGTCGTCGGGCTCCTCCGCGTCGGAAATCGATTTTACCA</left_flank>
        <right_flank>GTCACAAAGGAAACATTCGACGAAGTGGGCCGCTGAAAATAGGCGTTTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACTCACTTTTAGTGATTCCATGGAGCACTTTGACTTGCCGCTCCACCACTTCATAATCAATGGCTTTTGGTGGGGCCTTTTTTAGGCCTATCACCTCTTCCAGCAAAAATTTCGCACGTGGCAGTGCTGAAATCGGCTTTTTCTGAAAATCCGCGGCGATTTTATCGATTTTCGCAGTGATTTGTGGCCAGGCCGTCTTTTTGAGCGATTTATAGGCGTCTGAAAATGGGAAAATTTTTTAGGCTTTTTTAGGCCCTAAAACTCACAAGCAACAATAGTTCGGACTGCAAAAAGGTTGGTTAGATTCAAATTTCCCTCCAATTTTTCCACAATTTCAACGAGAATCGCTGGTTGGAGAATCTGCAAAACTACAGTAATCCTACAGTAAGCTACAGTAACCTAATTACCCGAAAAACGACTAAAAACGCCGTGAAAACTACACGATTCTCCATGGATTTGTCGTCGGGCTCCTCCGCGTCGGAAATCGATTTTACCAAGTCACAAAGGAAACATTCGACGAAGTGGGCCGCTGAAAATAGGCGTTTACAGGCTTTTTTCTAGGCTTATTTAGGCCGAAAATAGGCTTTTTAGGCCAAAAATATAAAAGTTTTTAGCCAAAAAAATTTTAGGCTTGTAAAATTTTTAAGGCCTGTAAAATTTTTAAGCCTGTAAAATTTCTAAGTTTGCAAAAAATGGTTCGGCTTGTAAAATTTTTTAGGCCTATCAAATTTCAAGGCTTAAAAAAATTTTAGGCCTGTCAAATTTTCAGGCTTGTAAAATTTTCAGGTCTGTAAAATTTTTAGACCTGCAACTGGCTCATTTTTCCGGGTTTTTAGGTCATTTTAATCCAATTTTAGGCCTTTTTAAACAATTTTTGGGTCATTTTCACCCGATTTTCAGCCAAATATCACTCACAAATCTCATTGCTAATCATTGTATGACACATCGTGATGAATGCTCCATATGTGGTGAGCAACGAGTCCTGCAGGCGGAATGG</canonical>
            <polymorphic>AAAACTCACTTTTAGTGATTCCATGGAGCACTTTGACTTGCCGCTCCACCACTTCATAATCAATGGCTTTTGGTGGGGCCTTTTTTAGGCCTATCACCTCTTCCAGCAAAAATTTCGCACGTGGCAGTGCTGAAATCGGCTTTTTCTGAAAATCCGCGGCGATTTTATCGATTTTCGCAGTGATTTGTGGCCAGGCCGTCTTTTTGAGCGATTTATAGGCGTCTGAAAATGGGAAAATTTTTTAGGCTTTTTTAGGCCCTAAAACTCACAAGCAACAATAGTTCGGACTGCAAAAAGGTTGGTTAGATTCAAATTTCCCTCCAATTTTTCCACAATTTCAACGAGAATCGCTGGTTGGAGAATCTGCAAAACTACAGTAATCCTACAGTAAGCTACAGTAACCTAATTACCCGAAAAACGACTAAAAACGCCGTGAAAACTACACGATTCTCCATGGATTTGTCGTCGGGCTCCTCCGCGTCGGAAATCGATTTTACCARGTCACAAAGGAAACATTCGACGAAGTGGGCCGCTGAAAATAGGCGTTTACAGGCTTTTTTCTAGGCTTATTTAGGCCGAAAATAGGCTTTTTAGGCCAAAAATATAAAAGTTTTTAGCCAAAAAAATTTTAGGCTTGTAAAATTTTTAAGGCCTGTAAAATTTTTAAGCCTGTAAAATTTCTAAGTTTGCAAAAAATGGTTCGGCTTGTAAAATTTTTTAGGCCTATCAAATTTCAAGGCTTAAAAAAATTTTAGGCCTGTCAAATTTTCAGGCTTGTAAAATTTTCAGGTCTGTAAAATTTTTAGACCTGCAACTGGCTCATTTTTCCGGGTTTTTAGGTCATTTTAATCCAATTTTAGGCCTTTTTAAACAATTTTTGGGTCATTTTCACCCGATTTTCAGCCAAATATCACTCACAAATCTCATTGCTAATCATTGTATGACACATCGTGATGAATGCTCCATATGTGGTGAGCAACGAGTCCTGCAGGCGGAATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCTGCAAAACTACAGTAATCCT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGGCCTAAAAAGCCTAT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>AATCTGCAAAACTACAGTAATCCTACAGTAAGCTACAGTAACCTAATTACCCGAAAAACGACTAAAAACGCCGTGAAAACTACACGATTCTCCATGGATTTGTCGTCGGGCTCCTCCGCGTCGGAAATCGATTTTACCAAGTCACAAAGGAAACATTCGACGAAGTGGGCCGCTGAAAATAGGCGTTTACAGGCTTTTTTCTAGGCTTATTTAGGCCGAAAATAGGCTTTTTAGGCCAAAA</canonical_amplicon>
		<polymorphic_amplicon>AATCTGCAAAACTACAGTAATCCTACAGTAAGCTACAGTAACCTAATTACCCGAAAAACGACTAAAAACGCCGTGAAAACTACACGATTCTCCATGGATTTGTCGTCGGGCTCCTCCGCGTCGGAAATCGATTTTACCARGTCACAAAGGAAACATTCGACGAAGTGGGCCGCTGAAAATAGGCGTTTACAGGCTTTTTTCTAGGCTTATTTAGGCCGAAAATAGGCTTTTTAGGCCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19077</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>62427</contig_pos>
        <strand>+</strand>
        <context>ACGGAAAGCT[A/G]TGTGGAGAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTCTCCGTGCTCATATCGAGACTTATCTTCACATCAATCACGGAAAGCT</left_flank>
        <right_flank>TGTGGAGAACTCGAAAAATTGTCAAAATCCCGGCATAACTGTTTCCCTGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGATGTGAGATTCAATAGACACTCTATTTATGTTATGTTATTCATTTCAGTAACATGCTACAATCGGTTCGTCGAAACGAGCGTCTCTACGTTAGCGATTTTTCGATGATGGTGTTCGACGAAGTTCACAAAACCAGTGGAAATCATCCTTATGTTCTGATTAACCGATTGGTTCAAGAATGGGATTACGAGAAGCCTCAGATCATTGGACTCACTGCTTCCCTGAATGTCAACGCTAAGGTACACACAGAAACAAGCGCAATGCTTGGAAACATCTACACCATGCTTGCATTATTGAACACACCGTGCTTGAGTTCAATCACTCATCAAGCCAGTATCGATGAGCTCAATGAGCACGTTACAAAACCAGACGATGGTAAGTTTGTTTTTGGTGTTATTGTGAAATGTGTAATTTTCAGAGGTGGAAGTCCTACCGCCAGGTCCGAATGTTCTCCGTGCTCATATCGAGACTTATCTTCACATCAATCACGGAAAGCTGTGTGGAGAACTCGAAAAATTGTCAAAATCCCGGCATAACTGTTTCCCTGCGAAAACGTATCACATGTTCCGAAAAGCCAATACGAAAGATTACGAGTACTACGATGCGCTACTCACCAACATCATCCAAGACCTGAACAAATTGAACACACCCGAGAAAATGTGTGCTCAAAAATGGACAAAATACATCAAGGTGACAAATAATCATAGTTTCCATCTCAAAATTAGTTTTTCAGGTATATGTTGAAGCCCGCAGCATCGTCGACGTCATGCCTGCAATGACGGCCTTTGAATACATGAGAGACGCAATTCGAATTCTCGATAATGAACACACTCTCACCCAGTTCAGCGACTTCTTTACTGATAGGATTTATGAGCCTTTGCGAAAAAATTCGGAGAATGTGGAACCGCCGATTGTACAAAAACTGAAGGATACACTCATTACTCAATTCGCGACGATTCCCGATTCGCGTGTCATCATCTTTGTTGTGCAGAGAAGTA</canonical>
            <polymorphic>CTGATGTGAGATTCAATAGACACTCTATTTATGTTATGTTATTCATTTCAGTAACATGCTACAATCGGTTCGTCGAAACGAGCGTCTCTACGTTAGCGATTTTTCGATGATGGTGTTCGACGAAGTTCACAAAACCAGTGGAAATCATCCTTATGTTCTGATTAACCGATTGGTTCAAGAATGGGATTACGAGAAGCCTCAGATCATTGGACTCACTGCTTCCCTGAATGTCAACGCTAAGGTACACACAGAAACAAGCGCAATGCTTGGAAACATCTACACCATGCTTGCATTATTGAACACACCGTGCTTGAGTTCAATCACTCATCAAGCCAGTATCGATGAGCTCAATGAGCACGTTACAAAACCAGACGATGGTAAGTTTGTTTTTGGTGTTATTGTGAAATGTGTAATTTTCAGAGGTGGAAGTCCTACCGCCAGGTCCGAATGTTCTCCGTGCTCATATCGAGACTTATCTTCACATCAATCACGGAAAGCTRTGTGGAGAACTCGAAAAATTGTCAAAATCCCGGCATAACTGTTTCCCTGCGAAAACGTATCACATGTTCCGAAAAGCCAATACGAAAGATTACGAGTACTACGATGCGCTACTCACCAACATCATCCAAGACCTGAACAAATTGAACACACCCGAGAAAATGTGTGCTCAAAAATGGACAAAATACATCAAGGTGACAAATAATCATAGTTTCCATCTCAAAATTAGTTTTTCAGGTATATGTTGAAGCCCGCAGCATCGTCGACGTCATGCCTGCAATGACGGCCTTTGAATACATGAGAGACGCAATTCGAATTCTCGATAATGAACACACTCTCACCCAGTTCAGCGACTTCTTTACTGATAGGATTTATGAGCCTTTGCGAAAAAATTCGGAGAATGTGGAACCGCCGATTGTACAAAAACTGAAGGATACACTCATTACTCAATTCGCGACGATTCCCGATTCGCGTGTCATCATCTTTGTTGTGCAGAGAAGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>135 93 75 65 58 53 38 37 34 34 33 33 33 31 29 22 21 17 15 14 14 14 14 12 11 10 9 8 8 7 6 5 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>135 93 75 65 58 53 38 37 34 34 33 33 33 31 29 22 21 17 15 14 14 14 14 14 11 10 9 8 8 7 6 5 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGAAATGTGTAATTTTCAGAGG</pcr_primer_p1>
		<pcr_primer_p2>GTGTTCAATTTGTTCAGGTCTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTGAAATGTGTAATTTTCAGAGGTGGAAGTCCTACCGCCAGGTCCGAATGTTCTCCGTGCTCATATCGAGACTTATCTTCACATCAATCACGGAAAGCTGTGTGGAGAACTCGAAAAATTGTCAAAATCCCGGCATAACTGTTTCCCTGCGAAAACGTATCACATGTTCCGAAAAGCCAATACGAAAGATTACGAGTACTACGATGCGCTACTCACCAACATCATCCAAGACCTGAACAAATTGAACAC</canonical_amplicon>
		<polymorphic_amplicon>GTGAAATGTGTAATTTTCAGAGGTGGAAGTCCTACCGCCAGGTCCGAATGTTCTCCGTGCTCATATCGAGACTTATCTTCACATCAATCACGGAAAGCTRTGTGGAGAACTCGAAAAATTGTCAAAATCCCGGCATAACTGTTTCCCTGCGAAAACGTATCACATGTTCCGAAAAGCCAATACGAAAGATTACGAGTACTACGATGCGCTACTCACCAACATCATCCAAGACCTGAACAAATTGAACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19078</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>66250</contig_pos>
        <strand></strand>
        <context>aaaacatgta[T/A]tagaaggatc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TACTTCGTATTTTCAATGTAAGATTTTTTCTTCAAACCGTAAAACATGTA</left_flank>
        <right_flank>TAGAAGGATCCCCACACTGTCAAGTTTGAGCTCATGCATCTCAATTCCTA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGTGAGTCTTGAATTCCTTCATTAAAAAAATCAGAAAAATATTTCAGCCAACTGCTGACACAAATAAAGAAGGAGCTTCTGATTTCAACCAATGGAACATCACTGAGGCAGACGAAAAAGGATTCAAACTTTCGCAATTGATCAAAAAGTTGTTAAAACAAGGAACCGCAAAAGCTGTTCCATTTGAAGTGAGCAATATTTTTTGGTACGAGATTAACTATATTCTCTTTAGCAAAAAGATGTCCACATACTCCTAAACCGTGTCTTCAAGTACTACACATGTCCACCGGATAAAAAAGGAAGTAGTACTGGTCCACCACCTCCTCCGCCTGGATCCGCATCTGCTACGACATCCGTGACACCTCCGAAATCACCGGCTCAACCGCTTCTCGAACTACAAGCACCTATCAATATTTGTGGAGACACTCATGGCCAGTATAATGATTTACTTCGTATTTTCAATGTAAGATTTTTTCTTCAAACCGTAAAACATGTATTAGAAGGATCCCCACACTGTCAAGTTTGAGCTCATGCATCTCAATTCCTATGCAAGATATCAAAAATGTGTCAACTAATAAAAACTTCTGTTATTATGATGAAGATTTTATCAGTGGACAACTTTGTTATATCTCCGACAGAAACCGAGAAAAAACGGCTCAAAGTTTAAGGATAGGGGAGCGCTTCTATTACAGTTTTTATTGAGTTTTCAGTCTTGTGGAGCACCAACAAAAAATCAATATCTGTTCCTGGGCGACTATATTGATCGAGGTCGTCATTCGTTGGAAGTCATCATTTTGCTTTTTGCTCTCAAGTTGGCAGTACCAAAGAAAGTTCATTTATTAAGAGGAAACCACGAATTGAAAGCTATCAACAAGTTAGTTTGCAATGGTTTTAAGAATATCTGCACAATTCTTTTTTAGAAACTACGGATTCTACGGAGAACTTAAAACAAGATTCCGTTGTGGTGCTGGAACCAATACTGGTGTTGCGGAGAGAC</canonical>
            <polymorphic>AAAAGTGAGTCTTGAATTCCTTCATTAAAAAAATCAGAAAAATATTTCAGCCAACTGCTGACACAAATAAAGAAGGAGCTTCTGATTTCAACCAATGGAACATCACTGAGGCAGACGAAAAAGGATTCAAACTTTCGCAATTGATCAAAAAGTTGTTAAAACAAGGAACCGCAAAAGCTGTTCCATTTGAAGTGAGCAATATTTTTTGGTACGAGATTAACTATATTCTCTTTAGCAAAAAGATGTCCACATACTCCTAAACCGTGTCTTCAAGTACTACACATGTCCACCGGATAAAAAAGGAAGTAGTACTGGTCCACCACCTCCTCCGCCTGGATCCGCATCTGCTACGACATCCGTGACACCTCCGAAATCACCGGCTCAACCGCTTCTCGAACTACAAGCACCTATCAATATTTGTGGAGACACTCATGGCCAGTATAATGATTTACTTCGTATTTTCAATGTAAGATTTTTTCTTCAAACCGTAAAACATGTAWTAGAAGGATCCCCACACTGTCAAGTTTGAGCTCATGCATCTCAATTCCTATGCAAGATATCAAAAATGTGTCAACTAATAAAAACTTCTGTTATTATGATGAAGATTTTATCAGTGGACAACTTTGTTATATCTCCGACAGAAACCGAGAAAAAACGGCTCAAAGTTTAAGGATAGGGGAGCGCTTCTATTACAGTTTTTATTGAGTTTTCAGTCTTGTGGAGCACCAACAAAAAATCAATATCTGTTCCTGGGCGACTATATTGATCGAGGTCGTCATTCGTTGGAAGTCATCATTTTGCTTTTTGCTCTCAAGTTGGCAGTACCAAAGAAAGTTCATTTATTAAGAGGAAACCACGAATTGAAAGCTATCAACAAGTTAGTTTGCAATGGTTTTAAGAATATCTGCACAATTCTTTTTTAGAAACTACGGATTCTACGGAGAACTTAAAACAAGATTCCGTTGTGGTGCTGGAACCAATACTGGTGTTGCGGAGAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATTTACTTCGTATTTTCAATG</pcr_primer_p1>
		<pcr_primer_p2>CTCCACAAGACTGAAAACTCA</pcr_primer_p2>
		<pcr_amplicon_size>280</pcr_amplicon_size>
		<canonical_amplicon>ATGATTTACTTCGTATTTTCAATGTAAGATTTTTTCTTCAAACCGTAAAACATGTATTAGAAGGATCCCCACACTGTCAAGTTTGAGCTCATGCATCTCAATTCCTATGCAAGATATCAAAAATGTGTCAACTAATAAAAACTTCTGTTATTATGATGAAGATTTTATCAGTGGACAACTTTGTTATATCTCCGACAGAAACCGAGAAAAAACGGCTCAAAGTTTAAGGATAGGGGAGCGCTTCTATTACAGTTTTTATTGAGTTTTCAGTCTTGTGGAG</canonical_amplicon>
		<polymorphic_amplicon>ATGATTTACTTCGTATTTTCAATGTAAGATTTTTTCTTCAAACCGTAAAACATGTAWTAGAAGGATCCCCACACTGTCAAGTTTGAGCTCATGCATCTCAATTCCTATGCAAGATATCAAAAATGTGTCAACTAATAAAAACTTCTGTTATTATGATGAAGATTTTATCAGTGGACAACTTTGTTATATCTCCGACAGAAACCGAGAAAAAACGGCTCAAAGTTTAAGGATAGGGGAGCGCTTCTATTACAGTTTTTATTGAGTTTTCAGTCTTGTGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19079</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>87405</contig_pos>
        <strand>+</strand>
        <context>TCTTCTTCTC[A/T]TTTTCCGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTATTGAAAATGGCACTAGAGACACTGTCTGTTCCTCTCCTCTTCTTCTC</left_flank>
        <right_flank>TTTTCCGAAATCGCAACCTGTTTTCAATTGGAAGAATGGCGAGGACTTCT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTCATCCTCTTTCATACTCGCTGTCTGATTTTTGTTCTGAAAAAGATACCGTATTCGCCTTAATAAGTAGAAGCCGACCCTTCCAGCTTCCAGCTCGATTATCTCGATTCCTATGAGAGATATCTAAAATTTTCAACCGATAAAATTATTTACCACAATATCACTAATATTTTATCGGTTGACAAATTTATGATACCTCTTATAGGAACCTAGATAATTGAGCTTAATGTTGGAAGTTGGGGAAGCCCTTCTTTTACAGGTTTTTCGCTAACATCTTCTACTTCTATGATAAATGTCTTCTAATATTTATTTTGTCTATCTAATAAAAATATCAATATCACTTTCTCCTTCTCACATGACTTCGAAATTCAATGAATGCATCAAACATATTTTCCGTTTCAAAAGTTCTGCCGGTGGGTCACTTCCATTCACACTTTCGCCTTCTCTCTTATTGAAAATGGCACTAGAGACACTGTCTGTTCCTCTCCTCTTCTTCTCTTTTTCCGAAATCGCAACCTGTTTTCAATTGGAAGAATGGCGAGGACTTCTGAGTGACCTCGCGACGTCGTCTTCCACTTTCAAATTGTCTTTTCAATTCATCGATTGTTTCTGTTTTGTTCCTTCTTTTATTCTATTTCTTCTTCTTTTTTGTTGTTGTCATGACGACATTTTTGAGGAGCCCCCAAGTGCTTCCTGCTTTTCCTTCCTTTTATGTCTGCCGTCTCTTTTAAATCTCTTACTCTCTCACTCTTCCTCTTGTTTTTCGATTCCTTCACATACCATATATGGTTGAATATTTGACTAACGAACCCTATCCGTTCAAAAATTTCACACCTATCTTCATGGGGTATCTCTTCTTTACAGGATTTTCTTTTCTATCAGCTCTTTTTTTCAGAAAAGTCCAAATGTTGGATCCAAGAGAAACATTCGAAAAATACGAGCACCGGAGGTCTCCACACCCGCCACAAGGAGTTATAACGACGGAAAGAAGAGAGTATT</canonical>
            <polymorphic>GGTCATCCTCTTTCATACTCGCTGTCTGATTTTTGTTCTGAAAAAGATACCGTATTCGCCTTAATAAGTAGAAGCCGACCCTTCCAGCTTCCAGCTCGATTATCTCGATTCCTATGAGAGATATCTAAAATTTTCAACCGATAAAATTATTTACCACAATATCACTAATATTTTATCGGTTGACAAATTTATGATACCTCTTATAGGAACCTAGATAATTGAGCTTAATGTTGGAAGTTGGGGAAGCCCTTCTTTTACAGGTTTTTCGCTAACATCTTCTACTTCTATGATAAATGTCTTCTAATATTTATTTTGTCTATCTAATAAAAATATCAATATCACTTTCTCCTTCTCACATGACTTCGAAATTCAATGAATGCATCAAACATATTTTCCGTTTCAAAAGTTCTGCCGGTGGGTCACTTCCATTCACACTTTCGCCTTCTCTCTTATTGAAAATGGCACTAGAGACACTGTCTGTTCCTCTCCTCTTCTTCTCWTTTTCCGAAATCGCAACCTGTTTTCAATTGGAAGAATGGCGAGGACTTCTGAGTGACCTCGCGACGTCGTCTTCCACTTTCAAATTGTCTTTTCAATTCATCGATTGTTTCTGTTTTGTTCCTTCTTTTATTCTATTTCTTCTTCTTTTTTGTTGTTGTCATGACGACATTTTTGAGGAGCCCCCAAGTGCTTCCTGCTTTTCCTTCCTTTTATGTCTGCCGTCTCTTTTAAATCTCTTACTCTCTCACTCTTCCTCTTGTTTTTCGATTCCTTCACATACCATATATGGTTGAATATTTGACTAACGAACCCTATCCGTTCAAAAATTTCACACCTATCTTCATGGGGTATCTCTTCTTTACAGGATTTTCTTTTCTATCAGCTCTTTTTTTCAGAAAAGTCCAAATGTTGGATCCAAGAGAAACATTCGAAAAATACGAGCACCGGAGGTCTCCACACCCGCCACAAGGAGTTATAACGACGGAAAGAAGAGAGTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACATATTTTCCGTTTCAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TAAAAGAAGGAACAAAACAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AACATATTTTCCGTTTCAAAAGTTCTGCCGGTGGGTCACTTCCATTCACACTTTCGCCTTCTCTCTTATTGAAAATGGCACTAGAGACACTGTCTGTTCCTCTCCTCTTCTTCTCTTTTTCCGAAATCGCAACCTGTTTTCAATTGGAAGAATGGCGAGGACTTCTGAGTGACCTCGCGACGTCGTCTTCCACTTTCAAATTGTCTTTTCAATTCATCGATTGTTTCTGTTTTGTTCCTTCTTTTA</canonical_amplicon>
		<polymorphic_amplicon>AACATATTTTCCGTTTCAAAAGTTCTGCCGGTGGGTCACTTCCATTCACACTTTCGCCTTCTCTCTTATTGAAAATGGCACTAGAGACACTGTCTGTTCCTCTCCTCTTCTTCTCWTTTTCCGAAATCGCAACCTGTTTTCAATTGGAAGAATGGCGAGGACTTCTGAGTGACCTCGCGACGTCGTCTTCCACTTTCAAATTGTCTTTTCAATTCATCGATTGTTTCTGTTTTGTTCCTTCTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19100</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>87112</contig_pos>
        <strand></strand>
        <context>yctcttatag[G/T]aacctagata</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAATATCACTAATATTTTATCGGTTGACAAATTTATGATACCTCTTATAG</left_flank>
        <right_flank>AACCTAGATAATTGAGCTTAATGTTGGAAGTTGGGGAAGCCCTTCTTTTA</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTATTTTTCAAAAATATTTTTTACATACCGTAAATCAAAAAAAAACTCCAAAAAATCTCCTGCCCCCTCCACCTCATTTACAATTTTGACCATTCTTTCCAGTAAAATCTTTCTTCCAATTCAAAATTGTTATCCAAAAATGTAAACAAACTGATGTCATACATAATTACCGAATTCAAGAATCAGAAAACAAGAAGTGCAGAAACTCTTGGAAAACGAGTCAATAAACTATAATTTCAGGTGGAGAGTCATGGGATTCCATGTTTTCAAATGTTGATTTTTTTCGAACTGGGTCATCCTCTTTCATACTCGCTGTCTGATTTTTGTTCTGAAAAAGATACCGTATTCGCCTTAATAAGTAGAAGCCGACCCTTCCAGCTTCCAGCTCGATTATCTCGATTCCTATGAGAGATATCTAAAATTTTCAACCGATAAAATTATTTACCACAATATCACTAATATTTTATCGGTTGACAAATTTATGATACCTCTTATAGGAACCTAGATAATTGAGCTTAATGTTGGAAGTTGGGGAAGCCCTTCTTTTACAGGTTTTTCGCTAACATCTTCTACTTCTATGATAAATGTCTTCTAATATTTATTTTGTCTATCTAATAAAAATATCAATATCACTTTCTCCTTCTCACATGACTTCGAAATTCAATGAATGCATCAAACATATTTTCCGTTTCAAAAGTTCTGCCGGTGGGTCACTTCCATTCACACTTTCGCCTTCTCTCTTATTGAAAATGGCACTAGAGACACTGTCTGTTCCTCTCCTCTTCTTCTCTTTTTCCGAAATCGCAACCTGTTTTCAATTGGAAGAATGGCGAGGACTTCTGAGTGACCTCGCGACGTCGTCTTCCACTTTCAAATTGTCTTTTCAATTCATCGATTGTTTCTGTTTTGTTCCTTCTTTTATTCTATTTCTTCTTCTTTTTTGTTGTTGTCATGACGACATTTTTGAGGAGCCCCCAAGTGCTTCCTGCTTTTCCTTC</canonical>
            <polymorphic>AATTATTTTTCAAAAATATTTTTTACATACCGTAAATCAAAAAAAAACTCCAAAAAATCTCCTGCCCCCTCCACCTCATTTACAATTTTGACCATTCTTTCCAGTAAAATCTTTCTTCCAATTCAAAATTGTTATCCAAAAATGTAAACAAACTGATGTCATACATAATTACCGAATTCAAGAATCAGAAAACAAGAAGTGCAGAAACTCTTGGAAAACGAGTCAATAAACTATAATTTCAGGTGGAGAGTCATGGGATTCCATGTTTTCAAATGTTGATTTTTTTCGAACTGGGTCATCCTCTTTCATACTCGCTGTCTGATTTTTGTTCTGAAAAAGATACCGTATTCGCCTTAATAAGTAGAAGCCGACCCTTCCAGCTTCCAGCTCGATTATCTCGATTCCTATGAGAGATATCTAAAATTTTCAACCGATAAAATTATTTACCACAATATCACTAATATTTTATCGGTTGACAAATTTATGATACCTCTTATAGKAACCTAGATAATTGAGCTTAATGTTGGAAGTTGGGGAAGCCCTTCTTTTACAGGTTTTTCGCTAACATCTTCTACTTCTATGATAAATGTCTTCTAATATTTATTTTGTCTATCTAATAAAAATATCAATATCACTTTCTCCTTCTCACATGACTTCGAAATTCAATGAATGCATCAAACATATTTTCCGTTTCAAAAGTTCTGCCGGTGGGTCACTTCCATTCACACTTTCGCCTTCTCTCTTATTGAAAATGGCACTAGAGACACTGTCTGTTCCTCTCCTCTTCTTCTCTTTTTCCGAAATCGCAACCTGTTTTCAATTGGAAGAATGGCGAGGACTTCTGAGTGACCTCGCGACGTCGTCTTCCACTTTCAAATTGTCTTTTCAATTCATCGATTGTTTCTGTTTTGTTCCTTCTTTTATTCTATTTCTTCTTCTTTTTTGTTGTTGTCATGACGACATTTTTGAGGAGCCCCCAAGTGCTTCCTGCTTTTCCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>501 471 28</canonical_bands>
                <polymorphic_bands>972 28</polymorphic_bands>
            </assay>
            <assay>
                <site>CCTNNNNNAGG</site>
                <isoschizomers>
                    <enzyme>BstENI</enzyme>
                    <enzyme>EcoNI</enzyme>
                    <enzyme>XagI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATACCGTATTCGCCTTAATA</pcr_primer_p1>
		<pcr_primer_p2>GTGAGAAGGAGAAAGTGATATTG</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>AGATACCGTATTCGCCTTAATAAGTAGAAGCCGACCCTTCCAGCTTCCAGCTCGATTATCTCGATTCCTATGAGAGATATCTAAAATTTTCAACCGATAAAATTATTTACCACAATATCACTAATATTTTATCGGTTGACAAATTTATGATACCTCTTATAGGAACCTAGATAATTGAGCTTAATGTTGGAAGTTGGGGAAGCCCTTCTTTTACAGGTTTTTCGCTAACATCTTCTACTTCTATGATAAATGTCTTCTAATATTTATTTTGTCTATCTAATAAAAATATCAATATCACTTTCTCCTTCTCAC</canonical_amplicon>
		<polymorphic_amplicon>AGATACCGTATTCGCCTTAATAAGTAGAAGCCGACCCTTCCAGCTTCCAGCTCGATTATCTCGATTCCTATGAGAGATATCTAAAATTTTCAACCGATAAAATTATTTACCACAATATCACTAATATTTTATCGGTTGACAAATTTATGATACCTCTTATAGKAACCTAGATAATTGAGCTTAATGTTGGAAGTTGGGGAAGCCCTTCTTTTACAGGTTTTTCGCTAACATCTTCTACTTCTATGATAAATGTCTTCTAATATTTATTTTGTCTATCTAATAAAAATATCAATATCACTTTCTCCTTCTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19110</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>87102</contig_pos>
        <strand></strand>
        <context>atttatgata[C/T]ctcttatagk</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATTTACCACAATATCACTAATATTTTATCGGTTGACAAATTTATGATA</left_flank>
        <right_flank>CTCTTATAGGAACCTAGATAATTGAGCTTAATGTTGGAAGTTGGGGAAGC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCTTCAATAAATTATTTTTCAAAAATATTTTTTACATACCGTAAATCAAAAAAAAACTCCAAAAAATCTCCTGCCCCCTCCACCTCATTTACAATTTTGACCATTCTTTCCAGTAAAATCTTTCTTCCAATTCAAAATTGTTATCCAAAAATGTAAACAAACTGATGTCATACATAATTACCGAATTCAAGAATCAGAAAACAAGAAGTGCAGAAACTCTTGGAAAACGAGTCAATAAACTATAATTTCAGGTGGAGAGTCATGGGATTCCATGTTTTCAAATGTTGATTTTTTTCGAACTGGGTCATCCTCTTTCATACTCGCTGTCTGATTTTTGTTCTGAAAAAGATACCGTATTCGCCTTAATAAGTAGAAGCCGACCCTTCCAGCTTCCAGCTCGATTATCTCGATTCCTATGAGAGATATCTAAAATTTTCAACCGATAAAATTATTTACCACAATATCACTAATATTTTATCGGTTGACAAATTTATGATACCTCTTATAGGAACCTAGATAATTGAGCTTAATGTTGGAAGTTGGGGAAGCCCTTCTTTTACAGGTTTTTCGCTAACATCTTCTACTTCTATGATAAATGTCTTCTAATATTTATTTTGTCTATCTAATAAAAATATCAATATCACTTTCTCCTTCTCACATGACTTCGAAATTCAATGAATGCATCAAACATATTTTCCGTTTCAAAAGTTCTGCCGGTGGGTCACTTCCATTCACACTTTCGCCTTCTCTCTTATTGAAAATGGCACTAGAGACACTGTCTGTTCCTCTCCTCTTCTTCTCTTTTTCCGAAATCGCAACCTGTTTTCAATTGGAAGAATGGCGAGGACTTCTGAGTGACCTCGCGACGTCGTCTTCCACTTTCAAATTGTCTTTTCAATTCATCGATTGTTTCTGTTTTGTTCCTTCTTTTATTCTATTTCTTCTTCTTTTTTGTTGTTGTCATGACGACATTTTTGAGGAGCCCCCAAGTGCTTCCTG</canonical>
            <polymorphic>TGCTTCAATAAATTATTTTTCAAAAATATTTTTTACATACCGTAAATCAAAAAAAAACTCCAAAAAATCTCCTGCCCCCTCCACCTCATTTACAATTTTGACCATTCTTTCCAGTAAAATCTTTCTTCCAATTCAAAATTGTTATCCAAAAATGTAAACAAACTGATGTCATACATAATTACCGAATTCAAGAATCAGAAAACAAGAAGTGCAGAAACTCTTGGAAAACGAGTCAATAAACTATAATTTCAGGTGGAGAGTCATGGGATTCCATGTTTTCAAATGTTGATTTTTTTCGAACTGGGTCATCCTCTTTCATACTCGCTGTCTGATTTTTGTTCTGAAAAAGATACCGTATTCGCCTTAATAAGTAGAAGCCGACCCTTCCAGCTTCCAGCTCGATTATCTCGATTCCTATGAGAGATATCTAAAATTTTCAACCGATAAAATTATTTACCACAATATCACTAATATTTTATCGGTTGACAAATTTATGATAYCTCTTATAGGAACCTAGATAATTGAGCTTAATGTTGGAAGTTGGGGAAGCCCTTCTTTTACAGGTTTTTCGCTAACATCTTCTACTTCTATGATAAATGTCTTCTAATATTTATTTTGTCTATCTAATAAAAATATCAATATCACTTTCTCCTTCTCACATGACTTCGAAATTCAATGAATGCATCAAACATATTTTCCGTTTCAAAAGTTCTGCCGGTGGGTCACTTCCATTCACACTTTCGCCTTCTCTCTTATTGAAAATGGCACTAGAGACACTGTCTGTTCCTCTCCTCTTCTTCTCTTTTTCCGAAATCGCAACCTGTTTTCAATTGGAAGAATGGCGAGGACTTCTGAGTGACCTCGCGACGTCGTCTTCCACTTTCAAATTGTCTTTTCAATTCATCGATTGTTTCTGTTTTGTTCCTTCTTTTATTCTATTTCTTCTTCTTTTTTGTTGTTGTCATGACGACATTTTTGAGGAGCCCCCAAGTGCTTCCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCTNNNNNAGG</site>
                <isoschizomers>
                    <enzyme>BstENI</enzyme>
                    <enzyme>EcoNI</enzyme>
                    <enzyme>XagI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATACCGTATTCGCCTTAATA</pcr_primer_p1>
		<pcr_primer_p2>GTGAGAAGGAGAAAGTGATATTG</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>AGATACCGTATTCGCCTTAATAAGTAGAAGCCGACCCTTCCAGCTTCCAGCTCGATTATCTCGATTCCTATGAGAGATATCTAAAATTTTCAACCGATAAAATTATTTACCACAATATCACTAATATTTTATCGGTTGACAAATTTATGATACCTCTTATAGGAACCTAGATAATTGAGCTTAATGTTGGAAGTTGGGGAAGCCCTTCTTTTACAGGTTTTTCGCTAACATCTTCTACTTCTATGATAAATGTCTTCTAATATTTATTTTGTCTATCTAATAAAAATATCAATATCACTTTCTCCTTCTCAC</canonical_amplicon>
		<polymorphic_amplicon>AGATACCGTATTCGCCTTAATAAGTAGAAGCCGACCCTTCCAGCTTCCAGCTCGATTATCTCGATTCCTATGAGAGATATCTAAAATTTTCAACCGATAAAATTATTTACCACAATATCACTAATATTTTATCGGTTGACAAATTTATGATAYCTCTTATAGGAACCTAGATAATTGAGCTTAATGTTGGAAGTTGGGGAAGCCCTTCTTTTACAGGTTTTTCGCTAACATCTTCTACTTCTATGATAAATGTCTTCTAATATTTATTTTGTCTATCTAATAAAAATATCAATATCACTTTCTCCTTCTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19141</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>150275</contig_pos>
        <strand>+</strand>
        <context>ATCTTCATTT[A/G]TTGGCCTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATTGTGTGGTACCGTTCACAGGAACAGGATTTCATTTATCTTCATTT</left_flank>
        <right_flank>TTGGCCTTTTATCAGGCGAGGTATAAAAAACTTGCAAAGCGTTGTATCTA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTCTCAATGAAGCATCGGTTTTGCACAATCTAAAACAACGATACTTCTCCAATCTTTACTATGTGCGTTTCATCTCAATTTTCTTTTACTATCTCATTCTGAGCCCGTATGCAAGAATGTAGGAAATCATTTCCTGAAAGTCTGAAAATTTTTTTGAGTGAGAATTTTGCAGAAAATGACTTAGAACTCTGGAAAATATTTTCTGACTAATTGGAAATCGTTTTCCATTTTCTTGCATACGGCATCCAATCCTCGTCAGGCCGGTTATCGTCATCTAGGGAACTAGATGACGCTTATCTAAGCCTAAGCATAGTTGCTGTGCACCGCACTCATTTTGCATTGCTCAGTATACTACCAACTTGTGGGGAACCGGCTCAAATGAAGAGAACGGTATTTAAACGGAATTTTTGTCTGCGGACCGCTCCTTATTTATGGGCATTCCCGGAGAAAATTGTGTGGTACCGTTCACAGGAACAGGATTTCATTTATCTTCATTTATTGGCCTTTTATCAGGCGAGGTATAAAAAACTTGCAAAGCGTTGTATCTATCTCGTGATCCCACTGGTATCATCTCAGAACAAGGACTAGAGATCGCAGCCCTCTGCGACAATTATCAATATAATCAATTAGGGAATTATAAAGATGAGGGAAAAACTAAATTTGCAAAGTGTTTTTCAGACATACTCTGGACTTTTCTGTGTCGTCATCAACCCATACAAACGCATTCCAATTTACACCGACTCAATCGCCGAGCAGTTCAAGGGGAAGAAGAGAAAAGAAATGCCACCTCACGTATTCGCCGTCACCGAAGAAGCCTATCGCAGTATGCTTCAAGAACGAGATGATCAATCTATTCTGTGCACGTATGGAAATTAAAATTGATTCTGATTCTGATAACAAACATTTTTCAGAGGAGAATCAGGAGCTGGAAAAACGGAAAACACCAAAAAGGTCATTCAGTACTTGGCATATGTAGCCAATCGGAATATGTTGAAAAA</canonical>
            <polymorphic>CTGTCTCAATGAAGCATCGGTTTTGCACAATCTAAAACAACGATACTTCTCCAATCTTTACTATGTGCGTTTCATCTCAATTTTCTTTTACTATCTCATTCTGAGCCCGTATGCAAGAATGTAGGAAATCATTTCCTGAAAGTCTGAAAATTTTTTTGAGTGAGAATTTTGCAGAAAATGACTTAGAACTCTGGAAAATATTTTCTGACTAATTGGAAATCGTTTTCCATTTTCTTGCATACGGCATCCAATCCTCGTCAGGCCGGTTATCGTCATCTAGGGAACTAGATGACGCTTATCTAAGCCTAAGCATAGTTGCTGTGCACCGCACTCATTTTGCATTGCTCAGTATACTACCAACTTGTGGGGAACCGGCTCAAATGAAGAGAACGGTATTTAAACGGAATTTTTGTCTGCGGACCGCTCCTTATTTATGGGCATTCCCGGAGAAAATTGTGTGGTACCGTTCACAGGAACAGGATTTCATTTATCTTCATTTRTTGGCCTTTTATCAGGCGAGGTATAAAAAACTTGCAAAGCGTTGTATCTATCTCGTGATCCCACTGGTATCATCTCAGAACAAGGACTAGAGATCGCAGCCCTCTGCGACAATTATCAATATAATCAATTAGGGAATTATAAAGATGAGGGAAAAACTAAATTTGCAAAGTGTTTTTCAGACATACTCTGGACTTTTCTGTGTCGTCATCAACCCATACAAACGCATTCCAATTTACACCGACTCAATCGCCGAGCAGTTCAAGGGGAAGAAGAGAAAAGAAATGCCACCTCACGTATTCGCCGTCACCGAAGAAGCCTATCGCAGTATGCTTCAAGAACGAGATGATCAATCTATTCTGTGCACGTATGGAAATTAAAATTGATTCTGATTCTGATAACAAACATTTTTCAGAGGAGAATCAGGAGCTGGAAAAACGGAAAACACCAAAAAGGTCATTCAGTACTTGGCATATGTAGCCAATCGGAATATGTTGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAATGAAGAGAACGGTATTTA</pcr_primer_p1>
		<pcr_primer_p2>TATATTGATAATTGTCGCAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCAAATGAAGAGAACGGTATTTAAACGGAATTTTTGTCTGCGGACCGCTCCTTATTTATGGGCATTCCCGGAGAAAATTGTGTGGTACCGTTCACAGGAACAGGATTTCATTTATCTTCATTTATTGGCCTTTTATCAGGCGAGGTATAAAAAACTTGCAAAGCGTTGTATCTATCTCGTGATCCCACTGGTATCATCTCAGAACAAGGACTAGAGATCGCAGCCCTCTGCGACAATTATCAATATA</canonical_amplicon>
		<polymorphic_amplicon>TCAAATGAAGAGAACGGTATTTAAACGGAATTTTTGTCTGCGGACCGCTCCTTATTTATGGGCATTCCCGGAGAAAATTGTGTGGTACCGTTCACAGGAACAGGATTTCATTTATCTTCATTTRTTGGCCTTTTATCAGGCGAGGTATAAAAAACTTGCAAAGCGTTGTATCTATCTCGTGATCCCACTGGTATCATCTCAGAACAAGGACTAGAGATCGCAGCCCTCTGCGACAATTATCAATATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19142</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>150400</contig_pos>
        <strand>+</strand>
        <context>ATCAATATAA[G/T]CAATTAGGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCAGAACAAGGACTAGAGATCGCAGCCCTCTGCGACAATTATCAATATAA</left_flank>
        <right_flank>CAATTAGGGAATTATAAAGATGAGGGAAAAACTAAATTTGCAAAGTGTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCATTTCCTGAAAGTCTGAAAATTTTTTTGAGTGAGAATTTTGCAGAAAATGACTTAGAACTCTGGAAAATATTTTCTGACTAATTGGAAATCGTTTTCCATTTTCTTGCATACGGCATCCAATCCTCGTCAGGCCGGTTATCGTCATCTAGGGAACTAGATGACGCTTATCTAAGCCTAAGCATAGTTGCTGTGCACCGCACTCATTTTGCATTGCTCAGTATACTACCAACTTGTGGGGAACCGGCTCAAATGAAGAGAACGGTATTTAAACGGAATTTTTGTCTGCGGACCGCTCCTTATTTATGGGCATTCCCGGAGAAAATTGTGTGGTACCGTTCACAGGAACAGGATTTCATTTATCTTCATTTATTGGCCTTTTATCAGGCGAGGTATAAAAAACTTGCAAAGCGTTGTATCTATCTCGTGATCCCACTGGTATCATCTCAGAACAAGGACTAGAGATCGCAGCCCTCTGCGACAATTATCAATATAATCAATTAGGGAATTATAAAGATGAGGGAAAAACTAAATTTGCAAAGTGTTTTTCAGACATACTCTGGACTTTTCTGTGTCGTCATCAACCCATACAAACGCATTCCAATTTACACCGACTCAATCGCCGAGCAGTTCAAGGGGAAGAAGAGAAAAGAAATGCCACCTCACGTATTCGCCGTCACCGAAGAAGCCTATCGCAGTATGCTTCAAGAACGAGATGATCAATCTATTCTGTGCACGTATGGAAATTAAAATTGATTCTGATTCTGATAACAAACATTTTTCAGAGGAGAATCAGGAGCTGGAAAAACGGAAAACACCAAAAAGGTCATTCAGTACTTGGCATATGTAGCCAATCGGAATATGTTGAAAAACCGAAAGACTTCAACTGATTTGGATATCTCAACGAACAGAGTGATGGGACAACTCGAAGAACAGCTTCTCCAAGCAAATCCAATTCTCGAAGCTTTCGGAAACAGCAAAACGGTCAAAAACGACA</canonical>
            <polymorphic>AAATCATTTCCTGAAAGTCTGAAAATTTTTTTGAGTGAGAATTTTGCAGAAAATGACTTAGAACTCTGGAAAATATTTTCTGACTAATTGGAAATCGTTTTCCATTTTCTTGCATACGGCATCCAATCCTCGTCAGGCCGGTTATCGTCATCTAGGGAACTAGATGACGCTTATCTAAGCCTAAGCATAGTTGCTGTGCACCGCACTCATTTTGCATTGCTCAGTATACTACCAACTTGTGGGGAACCGGCTCAAATGAAGAGAACGGTATTTAAACGGAATTTTTGTCTGCGGACCGCTCCTTATTTATGGGCATTCCCGGAGAAAATTGTGTGGTACCGTTCACAGGAACAGGATTTCATTTATCTTCATTTATTGGCCTTTTATCAGGCGAGGTATAAAAAACTTGCAAAGCGTTGTATCTATCTCGTGATCCCACTGGTATCATCTCAGAACAAGGACTAGAGATCGCAGCCCTCTGCGACAATTATCAATATAAKCAATTAGGGAATTATAAAGATGAGGGAAAAACTAAATTTGCAAAGTGTTTTTCAGACATACTCTGGACTTTTCTGTGTCGTCATCAACCCATACAAACGCATTCCAATTTACACCGACTCAATCGCCGAGCAGTTCAAGGGGAAGAAGAGAAAAGAAATGCCACCTCACGTATTCGCCGTCACCGAAGAAGCCTATCGCAGTATGCTTCAAGAACGAGATGATCAATCTATTCTGTGCACGTATGGAAATTAAAATTGATTCTGATTCTGATAACAAACATTTTTCAGAGGAGAATCAGGAGCTGGAAAAACGGAAAACACCAAAAAGGTCATTCAGTACTTGGCATATGTAGCCAATCGGAATATGTTGAAAAACCGAAAGACTTCAACTGATTTGGATATCTCAACGAACAGAGTGATGGGACAACTCGAAGAACAGCTTCTCCAAGCAAATCCAATTCTCGAAGCTTTCGGAAACAGCAAAACGGTCAAAAACGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAACAGGATTTCATTTATCTT</pcr_primer_p1>
		<pcr_primer_p2>GACACAGAAAAGTCCAGAGTATG</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>AGGAACAGGATTTCATTTATCTTCATTTATTGGCCTTTTATCAGGCGAGGTATAAAAAACTTGCAAAGCGTTGTATCTATCTCGTGATCCCACTGGTATCATCTCAGAACAAGGACTAGAGATCGCAGCCCTCTGCGACAATTATCAATATAATCAATTAGGGAATTATAAAGATGAGGGAAAAACTAAATTTGCAAAGTGTTTTTCAGACATACTCTGGACTTTTCTGTGTC</canonical_amplicon>
		<polymorphic_amplicon>AGGAACAGGATTTCATTTATCTTCATTTATTGGCCTTTTATCAGGCGAGGTATAAAAAACTTGCAAAGCGTTGTATCTATCTCGTGATCCCACTGGTATCATCTCAGAACAAGGACTAGAGATCGCAGCCCTCTGCGACAATTATCAATATAAKCAATTAGGGAATTATAAAGATGAGGGAAAAACTAAATTTGCAAAGTGTTTTTCAGACATACTCTGGACTTTTCTGTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19143</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>151943</contig_pos>
        <strand>+</strand>
        <context>ATTATCAGGC[C/T]AGTGGCTGGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAGTGACTTTGCGGTTGTTCACTACGCAGGAAGAGTTGATTATCAGGC</left_flank>
        <right_flank>AGTGGCTGGCGTGTGAAGAACATGGATCCTCTCAACGAAAACGTTATTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAATTTCGCTGTTGGGGCTATCGCCAAGGCTTCCTACGAAAGACTGTTCAGATGGCTTGTTCATCGTCTCAACAAATCATTGGGTTGGACTCGCCAACAATTGTCAAGGTCATCGGTTTACTCGATATGGGGTTTCGAAATTTTGAAACCCACTCATTCGAACAATGGTGCATCAATTCCACGAACGAGAACCTTCAACAGTTATTCAACAATACAATGGTCATTCGTGACCAGCAGGGAATATCTTGATGAAGGCCTTGAATGGAAATTCGTGGATTTCGGTCTAAATCTACAGCCCACGATTGATTTGATTGACAAGCCGATGGGACTCATGTCAACACTTGATGATGTTTGTCTTTTCCCACAAGGAAATGATCAATCCTTTGTTCAACGTCTCAACGACACCCATTCGCAACATCCAAAGTATGTCGTCCCTGAAATCCGTTCAAGAAGTGACTTTGCGGTTGTTCACTACGCAGGAAGAGTTGATTATCAGGCTAGTGGCTGGCGTGTGAAGAACATGGATCCTCTCAACGAAAACGTTATTGATGTACTAAAAGCGGCTAAAGAGAGTATCATTCTCGATATGTGGAAGGATATTGCAGACGTCTGCAGTCTCTCCGCTGCTGATAGTGGTTCCGATACTGGAGTCTTTGGATCAAGAATGCCCAAGAAGGGAATGTTCCGGACAGTGTCTCAACTCTATAAGGAACAACTCACTCGCCTTATGAGTACTCTCAATAACACAAATCCTCATTTTGTTCGTTGCATCATCCCTAACCATGAGAAGAAACACGGGGTTCTGAATGCTCATCTTGTTCTTGATCAGCTCAGGTGCAATGGAGTTCTTGAAGGAATTCGTATATGCCGTCAAGGATTCCCGACTCGTCTGCCATTCCATGAATTCCGTCAACGCTACGAAAAGCTTCTGGCGAACGATGTCATTCCAGCAGGATTCATGGATGGAAAAGAAGCCGTTCGTCGAATCATCCAGTTTCT</canonical>
            <polymorphic>TCAATTTCGCTGTTGGGGCTATCGCCAAGGCTTCCTACGAAAGACTGTTCAGATGGCTTGTTCATCGTCTCAACAAATCATTGGGTTGGACTCGCCAACAATTGTCAAGGTCATCGGTTTACTCGATATGGGGTTTCGAAATTTTGAAACCCACTCATTCGAACAATGGTGCATCAATTCCACGAACGAGAACCTTCAACAGTTATTCAACAATACAATGGTCATTCGTGACCAGCAGGGAATATCTTGATGAAGGCCTTGAATGGAAATTCGTGGATTTCGGTCTAAATCTACAGCCCACGATTGATTTGATTGACAAGCCGATGGGACTCATGTCAACACTTGATGATGTTTGTCTTTTCCCACAAGGAAATGATCAATCCTTTGTTCAACGTCTCAACGACACCCATTCGCAACATCCAAAGTATGTCGTCCCTGAAATCCGTTCAAGAAGTGACTTTGCGGTTGTTCACTACGCAGGAAGAGTTGATTATCAGGCYAGTGGCTGGCGTGTGAAGAACATGGATCCTCTCAACGAAAACGTTATTGATGTACTAAAAGCGGCTAAAGAGAGTATCATTCTCGATATGTGGAAGGATATTGCAGACGTCTGCAGTCTCTCCGCTGCTGATAGTGGTTCCGATACTGGAGTCTTTGGATCAAGAATGCCCAAGAAGGGAATGTTCCGGACAGTGTCTCAACTCTATAAGGAACAACTCACTCGCCTTATGAGTACTCTCAATAACACAAATCCTCATTTTGTTCGTTGCATCATCCCTAACCATGAGAAGAAACACGGGGTTCTGAATGCTCATCTTGTTCTTGATCAGCTCAGGTGCAATGGAGTTCTTGAAGGAATTCGTATATGCCGTCAAGGATTCCCGACTCGTCTGCCATTCCATGAATTCCGTCAACGCTACGAAAAGCTTCTGGCGAACGATGTCATTCCAGCAGGATTCATGGATGGAAAAGAAGCCGTTCGTCGAATCATCCAGTTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>266 200 178 96 59 49 40 26 25 24 18 12 7</canonical_bands>
                <polymorphic_bands>266 200 185 96 59 49 40 26 25 24 18 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACACTTGATGATGTTTGTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TCGAGAATGATACTCTCTTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACACTTGATGATGTTTGTCTTTTCCCACAAGGAAATGATCAATCCTTTGTTCAACGTCTCAACGACACCCATTCGCAACATCCAAAGTATGTCGTCCCTGAAATCCGTTCAAGAAGTGACTTTGCGGTTGTTCACTACGCAGGAAGAGTTGATTATCAGGCTAGTGGCTGGCGTGTGAAGAACATGGATCCTCTCAACGAAAACGTTATTGATGTACTAAAAGCGGCTAAAGAGAGTATCATTCTCGA</canonical_amplicon>
		<polymorphic_amplicon>AACACTTGATGATGTTTGTCTTTTCCCACAAGGAAATGATCAATCCTTTGTTCAACGTCTCAACGACACCCATTCGCAACATCCAAAGTATGTCGTCCCTGAAATCCGTTCAAGAAGTGACTTTGCGGTTGTTCACTACGCAGGAAGAGTTGATTATCAGGCYAGTGGCTGGCGTGTGAAGAACATGGATCCTCTCAACGAAAACGTTATTGATGTACTAAAAGCGGCTAAAGAGAGTATCATTCTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19144</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>157376</contig_pos>
        <strand>+</strand>
        <context>ACTAACGCTA[A/T]TGAATTCCGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTCAAATGTTTATTGCAACCTTTTCTGTACTCGTATTATACTAACGCTA</left_flank>
        <right_flank>TGAATTCCGGAATGCAACAATGAATTGATTGAAATTTCAAAATGATTGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTTCCCAAGTTGGTAACCTCGACGAGGATCGCGATTCTGTTCGCAACTAATTTCTCATTCCGTTTCATTCCAATGTTCCTTTTGTTTGATTGACTTACCGATTGTATTTCTCCCATACATATGTTATTAGACTATCCATTCCCCCTCTTGACCAACAATATTCCCCCTGAATTCCCTGCTTTAATATTATTCGTCGTGTTTTGTATTTTGCACAATATCACTTGTGGCTTTCTTCTTCTTCCATGCCCACCACCATCTCCTCAACTTCATAATGTATTCGTGTTTACCGCTTCCCGGTATAAGGCTTTCAAAAAAAACGGAAAGTGTCAGAAGTAATTTTAACCTCCACAAATCAATTGACACATTTCCGTTCAGATTTTAAAAATTTTATTGCTGAGTTGAAGATGTCGAATAAAATAAAATTTGTGTTTTCAACATACATTGAAAACTCAAATGTTTATTGCAACCTTTTCTGTACTCGTATTATACTAACGCTAATGAATTCCGGAATGCAACAATGAATTGATTGAAATTTCAAAATGATTGTTTTTTATCAGAAGCATAACGTATTTTAATACCTTTTTAGAGAGGGAAAGAAAGAAAAAGTTATCTGAAAGTGTGTTTCTTCGTCTGTGTTTTCCCGTAAGGTGTTTGCACAAGTGCTACGTTGTCGATTTACGAGGGATGTCCAACTAATACTAGTTTCCAGTTTTAGAATATTTGTATAAACTGAAAAGTCTTGTTTTCAATTCAAAAGTTTCAGAATGGCTCACATGAGAAGAACCAATCATGAAAAATCGCCAACGGAAGCGGAGAACTCGACGATTCTACTTAAAGAGCGGTAAAAAATAACTGTAAGCCAAGAGTTTCTTGTTAATTTTGCAGTTACGATCTTCTAAAATGGCTAACGAATGTCGAGATGCGTTCACCGAATTTTTTGATCCCTGTACAAATTGCCAACTATATAGAATCTCTTCCCATATGTAAATTAGCTGTCT</canonical>
            <polymorphic>TGGTTCCCAAGTTGGTAACCTCGACGAGGATCGCGATTCTGTTCGCAACTAATTTCTCATTCCGTTTCATTCCAATGTTCCTTTTGTTTGATTGACTTACCGATTGTATTTCTCCCATACATATGTTATTAGACTATCCATTCCCCCTCTTGACCAACAATATTCCCCCTGAATTCCCTGCTTTAATATTATTCGTCGTGTTTTGTATTTTGCACAATATCACTTGTGGCTTTCTTCTTCTTCCATGCCCACCACCATCTCCTCAACTTCATAATGTATTCGTGTTTACCGCTTCCCGGTATAAGGCTTTCAAAAAAAACGGAAAGTGTCAGAAGTAATTTTAACCTCCACAAATCAATTGACACATTTCCGTTCAGATTTTAAAAATTTTATTGCTGAGTTGAAGATGTCGAATAAAATAAAATTTGTGTTTTCAACATACATTGAAAACTCAAATGTTTATTGCAACCTTTTCTGTACTCGTATTATACTAACGCTAWTGAATTCCGGAATGCAACAATGAATTGATTGAAATTTCAAAATGATTGTTTTTTATCAGAAGCATAACGTATTTTAATACCTTTTTAGAGAGGGAAAGAAAGAAAAAGTTATCTGAAAGTGTGTTTCTTCGTCTGTGTTTTCCCGTAAGGTGTTTGCACAAGTGCTACGTTGTCGATTTACGAGGGATGTCCAACTAATACTAGTTTCCAGTTTTAGAATATTTGTATAAACTGAAAAGTCTTGTTTTCAATTCAAAAGTTTCAGAATGGCTCACATGAGAAGAACCAATCATGAAAAATCGCCAACGGAAGCGGAGAACTCGACGATTCTACTTAAAGAGCGGTAAAAAATAACTGTAAGCCAAGAGTTTCTTGTTAATTTTGCAGTTACGATCTTCTAAAATGGCTAACGAATGTCGAGATGCGTTCACCGAATTTTTTGATCCCTGTACAAATTGCCAACTATATAGAATCTCTTCCCATATGTAAATTAGCTGTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTTTATTGCTGAGTTGAA</pcr_primer_p1>
		<pcr_primer_p2>ACGAAGAAACACACTTTCAGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTTTATTGCTGAGTTGAAGATGTCGAATAAAATAAAATTTGTGTTTTCAACATACATTGAAAACTCAAATGTTTATTGCAACCTTTTCTGTACTCGTATTATACTAACGCTAATGAATTCCGGAATGCAACAATGAATTGATTGAAATTTCAAAATGATTGTTTTTTATCAGAAGCATAACGTATTTTAATACCTTTTTAGAGAGGGAAAGAAAGAAAAAGTTATCTGAAAGTGTGTTTCTTCGT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTTTATTGCTGAGTTGAAGATGTCGAATAAAATAAAATTTGTGTTTTCAACATACATTGAAAACTCAAATGTTTATTGCAACCTTTTCTGTACTCGTATTATACTAACGCTAWTGAATTCCGGAATGCAACAATGAATTGATTGAAATTTCAAAATGATTGTTTTTTATCAGAAGCATAACGTATTTTAATACCTTTTTAGAGAGGGAAAGAAAGAAAAAGTTATCTGAAAGTGTGTTTCTTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19145</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>157563</contig_pos>
        <strand>+</strand>
        <context>TTTACGAGGG[A/G]TGTCCAACTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTTCCCGTAAGGTGTTTGCACAAGTGCTACGTTGTCGATTTACGAGGG</left_flank>
        <right_flank>TGTCCAACTAATACTAGTTTCCAGTTTTAGAATATTTGTATAAACTGAAA</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATTCGTCGTGTTTTGTATTTTGCACAATATCACTTGTGGCTTTCTTCTTCTTCCATGCCCACCACCATCTCCTCAACTTCATAATGTATTCGTGTTTACCGCTTCCCGGTATAAGGCTTTCAAAAAAAACGGAAAGTGTCAGAAGTAATTTTAACCTCCACAAATCAATTGACACATTTCCGTTCAGATTTTAAAAATTTTATTGCTGAGTTGAAGATGTCGAATAAAATAAAATTTGTGTTTTCAACATACATTGAAAACTCAAATGTTTATTGCAACCTTTTCTGTACTCGTATTATACTAACGCTAATGAATTCCGGAATGCAACAATGAATTGATTGAAATTTCAAAATGATTGTTTTTTATCAGAAGCATAACGTATTTTAATACCTTTTTAGAGAGGGAAAGAAAGAAAAAGTTATCTGAAAGTGTGTTTCTTCGTCTGTGTTTTCCCGTAAGGTGTTTGCACAAGTGCTACGTTGTCGATTTACGAGGGATGTCCAACTAATACTAGTTTCCAGTTTTAGAATATTTGTATAAACTGAAAAGTCTTGTTTTCAATTCAAAAGTTTCAGAATGGCTCACATGAGAAGAACCAATCATGAAAAATCGCCAACGGAAGCGGAGAACTCGACGATTCTACTTAAAGAGCGGTAAAAAATAACTGTAAGCCAAGAGTTTCTTGTTAATTTTGCAGTTACGATCTTCTAAAATGGCTAACGAATGTCGAGATGCGTTCACCGAATTTTTTGATCCCTGTACAAATTGCCAACTATATAGAATCTCTTCCCATATGTAAATTAGCTGTCTCTCCGTAAGTTATCATATTCAAAAACTGAAATTTTTCATCTAGTCTCTTTTCAGAAAATGCGATCGAGTTGCTTTGATGAGTTATGCTCGTCAATTGGACATTTATCAAATCAACGGAGAAATCCTAGAACAGGAATCAAGTGTGCAAGTTCTTGAAGAAACGTCACCTGAATATTGTCTCCTTCAA</canonical>
            <polymorphic>ATTATTCGTCGTGTTTTGTATTTTGCACAATATCACTTGTGGCTTTCTTCTTCTTCCATGCCCACCACCATCTCCTCAACTTCATAATGTATTCGTGTTTACCGCTTCCCGGTATAAGGCTTTCAAAAAAAACGGAAAGTGTCAGAAGTAATTTTAACCTCCACAAATCAATTGACACATTTCCGTTCAGATTTTAAAAATTTTATTGCTGAGTTGAAGATGTCGAATAAAATAAAATTTGTGTTTTCAACATACATTGAAAACTCAAATGTTTATTGCAACCTTTTCTGTACTCGTATTATACTAACGCTAATGAATTCCGGAATGCAACAATGAATTGATTGAAATTTCAAAATGATTGTTTTTTATCAGAAGCATAACGTATTTTAATACCTTTTTAGAGAGGGAAAGAAAGAAAAAGTTATCTGAAAGTGTGTTTCTTCGTCTGTGTTTTCCCGTAAGGTGTTTGCACAAGTGCTACGTTGTCGATTTACGAGGGRTGTCCAACTAATACTAGTTTCCAGTTTTAGAATATTTGTATAAACTGAAAAGTCTTGTTTTCAATTCAAAAGTTTCAGAATGGCTCACATGAGAAGAACCAATCATGAAAAATCGCCAACGGAAGCGGAGAACTCGACGATTCTACTTAAAGAGCGGTAAAAAATAACTGTAAGCCAAGAGTTTCTTGTTAATTTTGCAGTTACGATCTTCTAAAATGGCTAACGAATGTCGAGATGCGTTCACCGAATTTTTTGATCCCTGTACAAATTGCCAACTATATAGAATCTCTTCCCATATGTAAATTAGCTGTCTCTCCGTAAGTTATCATATTCAAAAACTGAAATTTTTCATCTAGTCTCTTTTCAGAAAATGCGATCGAGTTGCTTTGATGAGTTATGCTCGTCAATTGGACATTTATCAAATCAACGGAGAAATCCTAGAACAGGAATCAAGTGTGCAAGTTCTTGAAGAAACGTCACCTGAATATTGTCTCCTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGTTATCTGAAAGTGTGTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTACCGCTCTTTAAGTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGTTATCTGAAAGTGTGTTTCTTCGTCTGTGTTTTCCCGTAAGGTGTTTGCACAAGTGCTACGTTGTCGATTTACGAGGGATGTCCAACTAATACTAGTTTCCAGTTTTAGAATATTTGTATAAACTGAAAAGTCTTGTTTTCAATTCAAAAGTTTCAGAATGGCTCACATGAGAAGAACCAATCATGAAAAATCGCCAACGGAAGCGGAGAACTCGACGATTCTACTTAAAGAGCGGTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGTTATCTGAAAGTGTGTTTCTTCGTCTGTGTTTTCCCGTAAGGTGTTTGCACAAGTGCTACGTTGTCGATTTACGAGGGRTGTCCAACTAATACTAGTTTCCAGTTTTAGAATATTTGTATAAACTGAAAAGTCTTGTTTTCAATTCAAAAGTTTCAGAATGGCTCACATGAGAAGAACCAATCATGAAAAATCGCCAACGGAAGCGGAGAACTCGACGATTCTACTTAAAGAGCGGTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19146</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>170255</contig_pos>
        <strand>+</strand>
        <context>CCGAAACAAA[A/T]TAATCCAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGAGAGAATAGACGCGGTGGATATGAGAAAGCCCGTTGAGCCGAAACAAA</left_flank>
        <right_flank>TAATCCAGAAGAGGCGTAAGTTTTTTTTTCTAGGGTCTGAGAATTACAGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTACTTCCACACCATTTCGTACTACAATGCCCATATTTAACAGCGTAGCAATTAGCAGGTGCTTGGTGAATAGTCAACCTTCAGTTCACCCCCAAATACATAATATTTGCACATATTTCGGTATGGTATCAAATGTTGGTGTAACATGCATACACACACCTTTCGCACCCATCTATGTACATTTGTGTGACCAGAGACAGACAGCTGACTCTTGACTCTCTCTTTATGATTTATTGTTATTGCAGACGAAGTGTTGGTGCACCAAGGGCGACTACTGCAATATAGATCTAGTCGATCGGATACGTGATAAGCGTGATGATGAAGAAGATGATTACGATGATTTTACAGTTGAAGCTAACACAGAATTCAATGAAAATGACAACAGCATCGGAGAGGATGAAGAGGACGATAGCCAAGATTTGCGTGCACCCGCAACAAGTACTGTAGCCGAGAGAATAGACGCGGTGGATATGAGAAAGCCCGTTGAGCCGAAACAAAATAATCCAGAAGAGGCGTAAGTTTTTTTTTCTAGGGTCTGAGAATTACAGTAACCTTTGTAGGGCCCTTCCTCCATGGCGTCGCATGAACCCTCTGAACGCCAATGACCCTTGGAAGCCACCTCCACCACCACCGATGCCTGGAAGACAGCCGATCCTCCCTCCGACAACCACTTCCACTACTACAACAACTACCACAACAGCTCCACCAACCACTACAACCACCTTGAGTTATGAAGAAAGAATGAGGATTTATGAAGAGAGACGACGTGAAATTGAGCAGCAACGAGAGGCAGAACTGAAACGACGGGCTGAATTGGAAAGACAACGGTTGGAGGAGAGGAGACGCTTGGAATCTCAACATGAATCCAGAAGAAAGTTCGGTGAGGAGTCTCAAAGTTGGCGAGCTGCTCCTGAAGTTCCAATAACTACCACAACCACCACTACACGGACAACTCCATCAACTACTTCAACCACAACGACTACAACAACTACCACAACT</canonical>
            <polymorphic>GTTACTTCCACACCATTTCGTACTACAATGCCCATATTTAACAGCGTAGCAATTAGCAGGTGCTTGGTGAATAGTCAACCTTCAGTTCACCCCCAAATACATAATATTTGCACATATTTCGGTATGGTATCAAATGTTGGTGTAACATGCATACACACACCTTTCGCACCCATCTATGTACATTTGTGTGACCAGAGACAGACAGCTGACTCTTGACTCTCTCTTTATGATTTATTGTTATTGCAGACGAAGTGTTGGTGCACCAAGGGCGACTACTGCAATATAGATCTAGTCGATCGGATACGTGATAAGCGTGATGATGAAGAAGATGATTACGATGATTTTACAGTTGAAGCTAACACAGAATTCAATGAAAATGACAACAGCATCGGAGAGGATGAAGAGGACGATAGCCAAGATTTGCGTGCACCCGCAACAAGTACTGTAGCCGAGAGAATAGACGCGGTGGATATGAGAAAGCCCGTTGAGCCGAAACAAAWTAATCCAGAAGAGGCGTAAGTTTTTTTTTCTAGGGTCTGAGAATTACAGTAACCTTTGTAGGGCCCTTCCTCCATGGCGTCGCATGAACCCTCTGAACGCCAATGACCCTTGGAAGCCACCTCCACCACCACCGATGCCTGGAAGACAGCCGATCCTCCCTCCGACAACCACTTCCACTACTACAACAACTACCACAACAGCTCCACCAACCACTACAACCACCTTGAGTTATGAAGAAAGAATGAGGATTTATGAAGAGAGACGACGTGAAATTGAGCAGCAACGAGAGGCAGAACTGAAACGACGGGCTGAATTGGAAAGACAACGGTTGGAGGAGAGGAGACGCTTGGAATCTCAACATGAATCCAGAAGAAAGTTCGGTGAGGAGTCTCAAAGTTGGCGAGCTGCTCCTGAAGTTCCAATAACTACCACAACCACCACTACACGGACAACTCCATCAACTACTTCAACCACAACGACTACAACAACTACCACAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGTACTGTAGCCGAGAGAATA</pcr_primer_p1>
		<pcr_primer_p2>TTGTAGTAGTGGAAGTGGTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAGTACTGTAGCCGAGAGAATAGACGCGGTGGATATGAGAAAGCCCGTTGAGCCGAAACAAAATAATCCAGAAGAGGCGTAAGTTTTTTTTTCTAGGGTCTGAGAATTACAGTAACCTTTGTAGGGCCCTTCCTCCATGGCGTCGCATGAACCCTCTGAACGCCAATGACCCTTGGAAGCCACCTCCACCACCACCGATGCCTGGAAGACAGCCGATCCTCCCTCCGACAACCACTTCCACTACTACAA</canonical_amplicon>
		<polymorphic_amplicon>CAAGTACTGTAGCCGAGAGAATAGACGCGGTGGATATGAGAAAGCCCGTTGAGCCGAAACAAAWTAATCCAGAAGAGGCGTAAGTTTTTTTTTCTAGGGTCTGAGAATTACAGTAACCTTTGTAGGGCCCTTCCTCCATGGCGTCGCATGAACCCTCTGAACGCCAATGACCCTTGGAAGCCACCTCCACCACCACCGATGCCTGGAAGACAGCCGATCCTCCCTCCGACAACCACTTCCACTACTACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19147</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>172435</contig_pos>
        <strand>+</strand>
        <context>TTCATATTCA[C/T]ATAAATAGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGTTTTTCTGCCCATTTTTACAATGCCTCCGGAAAATTGTTCATATTCA</left_flank>
        <right_flank>ATAAATAGATTTTGCTCATTTCCCTCTTTCTTCTGGAAATCGTATTAGGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCATCTTATGGTTCTTGTTGTAACCGGTCTTTATTTTCATTCTCGTTCCCACCAAAGCACCCCTATGCACCCCATTTTCAATTTTATCATCTTTCTAGATTTAATAATGTTGTTCTGTTTGTTTTTCCTTCTGTTTTCTAATTTTTGTGATAATCTAGTCCCCAGTTCCCATCCAAACCCCAAAATTTCCCATCCAGATTCTGTTTGAGCCCAATGATAAAAAATCCTGTCTTTTTTCAAAAACCATAATAGTAATCTAGAAATCCCTGTTCTGTCTAATTACCAGTAACCCTTTCTTACCAATTTCTTTTTCTTCTCCTCCCACCAAAAAACCCCTCACGTTAACGGGTTTCAATCTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCGTTTTTCTGCCCATTTTTACAATGCCTCCGGAAAATTGTTCATATTCATATAAATAGATTTTGCTCATTTCCCTCTTTCTTCTGGAAATCGTATTAGGTAGTAGGGTGGTGCAATTAGGTGTTGAGGAGGATCTGGCTCGAGTGGTGGCGCCAATGAAGGGCGCCCACTTGAGCCAGAATTCAGAAAGCAGAAGATCTCATAATCGAGTTGAGTTGTTGGGGATACGGTAGATCCCACAATGCACAAAGGAAAATATATTATTCGTCTGAAAAAATTAGGAGCACAAGGAGAGTAACGAGGTTATGATGGAAGGTAGGATTACGATAGAAAAAAAATATTCGGTGATGAAAACGATAACTGTAGGAATGAAACATTTGAACATGAAAAGGATTACTGTAAGAAAAAATAATCGAAAAATAAAAGGTTAACTGTTGAGAAGAAAAAAGAAAATTGGAAGGATTACTGTAGAGAAAATAATTGGGAAATGAAAAGGATTACTGTAGGAGAAAAGTTTTAAATATTTAATTTACTTTGAAAAGTTTTAAAAA</canonical>
            <polymorphic>ATCATCTTATGGTTCTTGTTGTAACCGGTCTTTATTTTCATTCTCGTTCCCACCAAAGCACCCCTATGCACCCCATTTTCAATTTTATCATCTTTCTAGATTTAATAATGTTGTTCTGTTTGTTTTTCCTTCTGTTTTCTAATTTTTGTGATAATCTAGTCCCCAGTTCCCATCCAAACCCCAAAATTTCCCATCCAGATTCTGTTTGAGCCCAATGATAAAAAATCCTGTCTTTTTTCAAAAACCATAATAGTAATCTAGAAATCCCTGTTCTGTCTAATTACCAGTAACCCTTTCTTACCAATTTCTTTTTCTTCTCCTCCCACCAAAAAACCCCTCACGTTAACGGGTTTCAATCTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCGTTTTTCTGCCCATTTTTACAATGCCTCCGGAAAATTGTTCATATTCAYATAAATAGATTTTGCTCATTTCCCTCTTTCTTCTGGAAATCGTATTAGGTAGTAGGGTGGTGCAATTAGGTGTTGAGGAGGATCTGGCTCGAGTGGTGGCGCCAATGAAGGGCGCCCACTTGAGCCAGAATTCAGAAAGCAGAAGATCTCATAATCGAGTTGAGTTGTTGGGGATACGGTAGATCCCACAATGCACAAAGGAAAATATATTATTCGTCTGAAAAAATTAGGAGCACAAGGAGAGTAACGAGGTTATGATGGAAGGTAGGATTACGATAGAAAAAAAATATTCGGTGATGAAAACGATAACTGTAGGAATGAAACATTTGAACATGAAAAGGATTACTGTAAGAAAAAATAATCGAAAAATAAAAGGTTAACTGTTGAGAAGAAAAAAGAAAATTGGAAGGATTACTGTAGAGAAAATAATTGGGAAATGAAAAGGATTACTGTAGGAGAAAAGTTTTAAATATTTAATTTACTTTGAAAAGTTTTAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACCAATTTCTTTTTCTTCTCCT</pcr_primer_p1>
		<pcr_primer_p2>CACCCTACTACCTAATACGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>TACCAATTTCTTTTTCTTCTCCTCCCACCAAAAAACCCCTCACGTTAACGGGTTTCAATCTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCGTTTTTCTGCCCATTTTTACAATGCCTCCGGAAAATTGTTCATATTCATATAAATAGATTTTGCTCATTTCCCTCTTTCTTCTGGAAATCGTATTAGGTAGTAGGGTG</canonical_amplicon>
		<polymorphic_amplicon>TACCAATTTCTTTTTCTTCTCCTCCCACCAAAAAACCCCTCACGTTAACGGGTTTCAATCTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCGTTTTTCTGCCCATTTTTACAATGCCTCCGGAAAATTGTTCATATTCAYATAAATAGATTTTGCTCATTTCCCTCTTTCTTCTGGAAATCGTATTAGGTAGTAGGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19148</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>175169</contig_pos>
        <strand>+</strand>
        <context>TGTTCATCTT[C/T]CTATTCTTGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTCGGTCGTTCTAAATTTTAAAGAATCTTTTCTCTATCTGTTCATCTT</left_flank>
        <right_flank>CTATTCTTGCCTACTAAACCCCATCGAACTTTTTTATATCGCCTCCTGAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGCAAATTCATCAGTAAACCGGCCAAGTTTCGAATAATTTTATCAACTTTGAGCTGAGTTATTGCATGGCAAAGTTGCTTCATCTCACGAAAATCACAACGCCGTGCAAGAAACATTATGCCATTTTTCTTTGGACAATCTCAACAACACCTAGAATTGAGGAATCGCTTTGAAAATTTCAGTAGGTTTGAATCAAAAGCAAAATCCCACCATTTTTAGTGCTTTCGAAATGCTTATGTCTAAAGACACATGTAGCCATTTTTAACAGTCCGGTAATTGTGCACCATCCTGTATTTAGTCAAACTGGAGGTTCAAAATTTCCCAGGTGGACCCATGAAATCATATTTTAGATTCAGAGAAAACTCATAACGTTTTGAAATTCAAGCTTTCTGTTTTTGGCTGGTTTTGCTAAATACCATACTGTTTTTATGGTTTTAGTAGGTTAAAATTCGGTCGTTCTAAATTTTAAAGAATCTTTTCTCTATCTGTTCATCTTCCTATTCTTGCCTACTAAACCCCATCGAACTTTTTTATATCGCCTCCTGATGACTTCCGAAAATACTCTTTGCTCCTGCCAACTTTATAGATTTCGTTTTTTTTTTCAACCTCCCGAAAAATATATAATTCATTTGCGGAGAGCCGCAAGATCCATCGTTAAATGTTAATAAAACCTCTCGTGGTGGTGCCTCTCTAAATCGACGCCTTCGCATTTTGGCGCGAGGGAGGGGACGAATAATTTCGACGAGATAATGATCATAAAATGATGAGAAGAGGATGAGGGAGGAGGCTTTCCCCCTGTCGGTGCCTTTTCACAGATCCTTGTGGCTCTCAGCAGGAGGTAAAAGCACATGTTCCCCTGTCGGATTTGATCCGTGTCATTATTCGAAAACCTGTCATTTTCTTTGTTTTTCCAAAAAGAGACCGAAATTTCAATAATTGTTTGTGTCTGCTTCATGATTCATGTGACACCTCAAAAAGAGCTACAGTAATCTCAATT</canonical>
            <polymorphic>ATTTGCAAATTCATCAGTAAACCGGCCAAGTTTCGAATAATTTTATCAACTTTGAGCTGAGTTATTGCATGGCAAAGTTGCTTCATCTCACGAAAATCACAACGCCGTGCAAGAAACATTATGCCATTTTTCTTTGGACAATCTCAACAACACCTAGAATTGAGGAATCGCTTTGAAAATTTCAGTAGGTTTGAATCAAAAGCAAAATCCCACCATTTTTAGTGCTTTCGAAATGCTTATGTCTAAAGACACATGTAGCCATTTTTAACAGTCCGGTAATTGTGCACCATCCTGTATTTAGTCAAACTGGAGGTTCAAAATTTCCCAGGTGGACCCATGAAATCATATTTTAGATTCAGAGAAAACTCATAACGTTTTGAAATTCAAGCTTTCTGTTTTTGGCTGGTTTTGCTAAATACCATACTGTTTTTATGGTTTTAGTAGGTTAAAATTCGGTCGTTCTAAATTTTAAAGAATCTTTTCTCTATCTGTTCATCTTYCTATTCTTGCCTACTAAACCCCATCGAACTTTTTTATATCGCCTCCTGATGACTTCCGAAAATACTCTTTGCTCCTGCCAACTTTATAGATTTCGTTTTTTTTTTCAACCTCCCGAAAAATATATAATTCATTTGCGGAGAGCCGCAAGATCCATCGTTAAATGTTAATAAAACCTCTCGTGGTGGTGCCTCTCTAAATCGACGCCTTCGCATTTTGGCGCGAGGGAGGGGACGAATAATTTCGACGAGATAATGATCATAAAATGATGAGAAGAGGATGAGGGAGGAGGCTTTCCCCCTGTCGGTGCCTTTTCACAGATCCTTGTGGCTCTCAGCAGGAGGTAAAAGCACATGTTCCCCTGTCGGATTTGATCCGTGTCATTATTCGAAAACCTGTCATTTTCTTTGTTTTTCCAAAAAGAGACCGAAATTTCAATAATTGTTTGTGTCTGCTTCATGATTCATGTGACACCTCAAAAAGAGCTACAGTAATCTCAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCAAGCTTTCTGTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>AATTATATATTTTTCGGGAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTCAAGCTTTCTGTTTTTGGCTGGTTTTGCTAAATACCATACTGTTTTTATGGTTTTAGTAGGTTAAAATTCGGTCGTTCTAAATTTTAAAGAATCTTTTCTCTATCTGTTCATCTTCCTATTCTTGCCTACTAAACCCCATCGAACTTTTTTATATCGCCTCCTGATGACTTCCGAAAATACTCTTTGCTCCTGCCAACTTTATAGATTTCGTTTTTTTTTTCAACCTCCCGAAAAATATATAATT</canonical_amplicon>
		<polymorphic_amplicon>AAATTCAAGCTTTCTGTTTTTGGCTGGTTTTGCTAAATACCATACTGTTTTTATGGTTTTAGTAGGTTAAAATTCGGTCGTTCTAAATTTTAAAGAATCTTTTCTCTATCTGTTCATCTTYCTATTCTTGCCTACTAAACCCCATCGAACTTTTTTATATCGCCTCCTGATGACTTCCGAAAATACTCTTTGCTCCTGCCAACTTTATAGATTTCGTTTTTTTTTTCAACCTCCCGAAAAATATATAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19149</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>175263</contig_pos>
        <strand>+</strand>
        <context>TTATAGATTT[C/T]GTTTTTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCTGATGACTTCCGAAAATACTCTTTGCTCCTGCCAACTTTATAGATTT</left_flank>
        <right_flank>GTTTTTTTTTTCAACCTCCCGAAAAATATATAATTCATTTGCGGAGAGCC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCACAACGCCGTGCAAGAAACATTATGCCATTTTTCTTTGGACAATCTCAACAACACCTAGAATTGAGGAATCGCTTTGAAAATTTCAGTAGGTTTGAATCAAAAGCAAAATCCCACCATTTTTAGTGCTTTCGAAATGCTTATGTCTAAAGACACATGTAGCCATTTTTAACAGTCCGGTAATTGTGCACCATCCTGTATTTAGTCAAACTGGAGGTTCAAAATTTCCCAGGTGGACCCATGAAATCATATTTTAGATTCAGAGAAAACTCATAACGTTTTGAAATTCAAGCTTTCTGTTTTTGGCTGGTTTTGCTAAATACCATACTGTTTTTATGGTTTTAGTAGGTTAAAATTCGGTCGTTCTAAATTTTAAAGAATCTTTTCTCTATCTGTTCATCTTCCTATTCTTGCCTACTAAACCCCATCGAACTTTTTTATATCGCCTCCTGATGACTTCCGAAAATACTCTTTGCTCCTGCCAACTTTATAGATTTCGTTTTTTTTTTCAACCTCCCGAAAAATATATAATTCATTTGCGGAGAGCCGCAAGATCCATCGTTAAATGTTAATAAAACCTCTCGTGGTGGTGCCTCTCTAAATCGACGCCTTCGCATTTTGGCGCGAGGGAGGGGACGAATAATTTCGACGAGATAATGATCATAAAATGATGAGAAGAGGATGAGGGAGGAGGCTTTCCCCCTGTCGGTGCCTTTTCACAGATCCTTGTGGCTCTCAGCAGGAGGTAAAAGCACATGTTCCCCTGTCGGATTTGATCCGTGTCATTATTCGAAAACCTGTCATTTTCTTTGTTTTTCCAAAAAGAGACCGAAATTTCAATAATTGTTTGTGTCTGCTTCATGATTCATGTGACACCTCAAAAAGAGCTACAGTAATCTCAATTTCAGGTTCACGAAGCGACATCCGGCTCAATGCCAGACCCGAGTCAAGATGTGACGGATTGTGTTGTGTGTGGGGATAAATCAAGTGGAAAACAT</canonical>
            <polymorphic>AATCACAACGCCGTGCAAGAAACATTATGCCATTTTTCTTTGGACAATCTCAACAACACCTAGAATTGAGGAATCGCTTTGAAAATTTCAGTAGGTTTGAATCAAAAGCAAAATCCCACCATTTTTAGTGCTTTCGAAATGCTTATGTCTAAAGACACATGTAGCCATTTTTAACAGTCCGGTAATTGTGCACCATCCTGTATTTAGTCAAACTGGAGGTTCAAAATTTCCCAGGTGGACCCATGAAATCATATTTTAGATTCAGAGAAAACTCATAACGTTTTGAAATTCAAGCTTTCTGTTTTTGGCTGGTTTTGCTAAATACCATACTGTTTTTATGGTTTTAGTAGGTTAAAATTCGGTCGTTCTAAATTTTAAAGAATCTTTTCTCTATCTGTTCATCTTCCTATTCTTGCCTACTAAACCCCATCGAACTTTTTTATATCGCCTCCTGATGACTTCCGAAAATACTCTTTGCTCCTGCCAACTTTATAGATTTYGTTTTTTTTTTCAACCTCCCGAAAAATATATAATTCATTTGCGGAGAGCCGCAAGATCCATCGTTAAATGTTAATAAAACCTCTCGTGGTGGTGCCTCTCTAAATCGACGCCTTCGCATTTTGGCGCGAGGGAGGGGACGAATAATTTCGACGAGATAATGATCATAAAATGATGAGAAGAGGATGAGGGAGGAGGCTTTCCCCCTGTCGGTGCCTTTTCACAGATCCTTGTGGCTCTCAGCAGGAGGTAAAAGCACATGTTCCCCTGTCGGATTTGATCCGTGTCATTATTCGAAAACCTGTCATTTTCTTTGTTTTTCCAAAAAGAGACCGAAATTTCAATAATTGTTTGTGTCTGCTTCATGATTCATGTGACACCTCAAAAAGAGCTACAGTAATCTCAATTTCAGGTTCACGAAGCGACATCCGGCTCAATGCCAGACCCGAGTCAAGATGTGACGGATTGTGTTGTGTGTGGGGATAAATCAAGTGGAAAACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTAAAATTCGGTCGTTCTAAAT</pcr_primer_p1>
		<pcr_primer_p2>ACCACGAGAGGTTTTATTAACAT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GTTAAAATTCGGTCGTTCTAAATTTTAAAGAATCTTTTCTCTATCTGTTCATCTTCCTATTCTTGCCTACTAAACCCCATCGAACTTTTTTATATCGCCTCCTGATGACTTCCGAAAATACTCTTTGCTCCTGCCAACTTTATAGATTTCGTTTTTTTTTTCAACCTCCCGAAAAATATATAATTCATTTGCGGAGAGCCGCAAGATCCATCGTTAAATGTTAATAAAACCTCTCGTGGT</canonical_amplicon>
		<polymorphic_amplicon>GTTAAAATTCGGTCGTTCTAAATTTTAAAGAATCTTTTCTCTATCTGTTCATCTTCCTATTCTTGCCTACTAAACCCCATCGAACTTTTTTATATCGCCTCCTGATGACTTCCGAAAATACTCTTTGCTCCTGCCAACTTTATAGATTTYGTTTTTTTTTTCAACCTCCCGAAAAATATATAATTCATTTGCGGAGAGCCGCAAGATCCATCGTTAAATGTTAATAAAACCTCTCGTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19150</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>175465</contig_pos>
        <strand>+</strand>
        <context>GGAGGCTTTC[A/C]CCCTGTCGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGAGATAATGATCATAAAATGATGAGAAGAGGATGAGGGAGGAGGCTTTC</left_flank>
        <right_flank>CCCTGTCGGTGCCTTTTCACAGATCCTTGTGGCTCTCAGCAGGAGGTAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAGTCAAACTGGAGGTTCAAAATTTCCCAGGTGGACCCATGAAATCATATTTTAGATTCAGAGAAAACTCATAACGTTTTGAAATTCAAGCTTTCTGTTTTTGGCTGGTTTTGCTAAATACCATACTGTTTTTATGGTTTTAGTAGGTTAAAATTCGGTCGTTCTAAATTTTAAAGAATCTTTTCTCTATCTGTTCATCTTCCTATTCTTGCCTACTAAACCCCATCGAACTTTTTTATATCGCCTCCTGATGACTTCCGAAAATACTCTTTGCTCCTGCCAACTTTATAGATTTCGTTTTTTTTTTCAACCTCCCGAAAAATATATAATTCATTTGCGGAGAGCCGCAAGATCCATCGTTAAATGTTAATAAAACCTCTCGTGGTGGTGCCTCTCTAAATCGACGCCTTCGCATTTTGGCGCGAGGGAGGGGACGAATAATTTCGACGAGATAATGATCATAAAATGATGAGAAGAGGATGAGGGAGGAGGCTTTCCCCCTGTCGGTGCCTTTTCACAGATCCTTGTGGCTCTCAGCAGGAGGTAAAAGCACATGTTCCCCTGTCGGATTTGATCCGTGTCATTATTCGAAAACCTGTCATTTTCTTTGTTTTTCCAAAAAGAGACCGAAATTTCAATAATTGTTTGTGTCTGCTTCATGATTCATGTGACACCTCAAAAAGAGCTACAGTAATCTCAATTTCAGGTTCACGAAGCGACATCCGGCTCAATGCCAGACCCGAGTCAAGATGTGACGGATTGTGTTGTGTGTGGGGATAAATCAAGTGGAAAACATTACGGACAATTCAGTTGTGAGGGATGCAAGAGTTTCTTTAAAAGGTATACAGAAGACACGAGTTCACTAAGGTTTTTTTAGCTTTTTGAGGGTGATCGAGAGCCAAATGAAGAGCCCAATGTTGGCAAAGCAGAGGAAGATAAGGGCTCCGGTTAGACCTCCGTAGACTGTCACGAATCCTTTTCTGAAAAAATTTAGATTC</canonical>
            <polymorphic>TTTAGTCAAACTGGAGGTTCAAAATTTCCCAGGTGGACCCATGAAATCATATTTTAGATTCAGAGAAAACTCATAACGTTTTGAAATTCAAGCTTTCTGTTTTTGGCTGGTTTTGCTAAATACCATACTGTTTTTATGGTTTTAGTAGGTTAAAATTCGGTCGTTCTAAATTTTAAAGAATCTTTTCTCTATCTGTTCATCTTCCTATTCTTGCCTACTAAACCCCATCGAACTTTTTTATATCGCCTCCTGATGACTTCCGAAAATACTCTTTGCTCCTGCCAACTTTATAGATTTCGTTTTTTTTTTCAACCTCCCGAAAAATATATAATTCATTTGCGGAGAGCCGCAAGATCCATCGTTAAATGTTAATAAAACCTCTCGTGGTGGTGCCTCTCTAAATCGACGCCTTCGCATTTTGGCGCGAGGGAGGGGACGAATAATTTCGACGAGATAATGATCATAAAATGATGAGAAGAGGATGAGGGAGGAGGCTTTCMCCCTGTCGGTGCCTTTTCACAGATCCTTGTGGCTCTCAGCAGGAGGTAAAAGCACATGTTCCCCTGTCGGATTTGATCCGTGTCATTATTCGAAAACCTGTCATTTTCTTTGTTTTTCCAAAAAGAGACCGAAATTTCAATAATTGTTTGTGTCTGCTTCATGATTCATGTGACACCTCAAAAAGAGCTACAGTAATCTCAATTTCAGGTTCACGAAGCGACATCCGGCTCAATGCCAGACCCGAGTCAAGATGTGACGGATTGTGTTGTGTGTGGGGATAAATCAAGTGGAAAACATTACGGACAATTCAGTTGTGAGGGATGCAAGAGTTTCTTTAAAAGGTATACAGAAGACACGAGTTCACTAAGGTTTTTTTAGCTTTTTGAGGGTGATCGAGAGCCAAATGAAGAGCCCAATGTTGGCAAAGCAGAGGAAGATAAGGGCTCCGGTTAGACCTCCGTAGACTGTCACGAATCCTTTTCTGAAAAAATTTAGATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>505 414 81</canonical_bands>
                <polymorphic_bands>919 81</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATATATAATTCATTTGCGGAGA</pcr_primer_p1>
		<pcr_primer_p2>GAACATGTGCTTTTACCTCCT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AATATATAATTCATTTGCGGAGAGCCGCAAGATCCATCGTTAAATGTTAATAAAACCTCTCGTGGTGGTGCCTCTCTAAATCGACGCCTTCGCATTTTGGCGCGAGGGAGGGGACGAATAATTTCGACGAGATAATGATCATAAAATGATGAGAAGAGGATGAGGGAGGAGGCTTTCCCCCTGTCGGTGCCTTTTCACAGATCCTTGTGGCTCTCAGCAGGAGGTAAAAGCACATGTTC</canonical_amplicon>
		<polymorphic_amplicon>AATATATAATTCATTTGCGGAGAGCCGCAAGATCCATCGTTAAATGTTAATAAAACCTCTCGTGGTGGTGCCTCTCTAAATCGACGCCTTCGCATTTTGGCGCGAGGGAGGGGACGAATAATTTCGACGAGATAATGATCATAAAATGATGAGAAGAGGATGAGGGAGGAGGCTTTCMCCCTGTCGGTGCCTTTTCACAGATCCTTGTGGCTCTCAGCAGGAGGTAAAAGCACATGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19151</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>175483</contig_pos>
        <strand>+</strand>
        <context>GGTGCCTTTT[C/T]ACAGATCCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGATGAGAAGAGGATGAGGGAGGAGGCTTTCCCCCTGTCGGTGCCTTTT</left_flank>
        <right_flank>ACAGATCCTTGTGGCTCTCAGCAGGAGGTAAAAGCACATGTTCCCCTGTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAAATTTCCCAGGTGGACCCATGAAATCATATTTTAGATTCAGAGAAAACTCATAACGTTTTGAAATTCAAGCTTTCTGTTTTTGGCTGGTTTTGCTAAATACCATACTGTTTTTATGGTTTTAGTAGGTTAAAATTCGGTCGTTCTAAATTTTAAAGAATCTTTTCTCTATCTGTTCATCTTCCTATTCTTGCCTACTAAACCCCATCGAACTTTTTTATATCGCCTCCTGATGACTTCCGAAAATACTCTTTGCTCCTGCCAACTTTATAGATTTCGTTTTTTTTTTCAACCTCCCGAAAAATATATAATTCATTTGCGGAGAGCCGCAAGATCCATCGTTAAATGTTAATAAAACCTCTCGTGGTGGTGCCTCTCTAAATCGACGCCTTCGCATTTTGGCGCGAGGGAGGGGACGAATAATTTCGACGAGATAATGATCATAAAATGATGAGAAGAGGATGAGGGAGGAGGCTTTCCCCCTGTCGGTGCCTTTTCACAGATCCTTGTGGCTCTCAGCAGGAGGTAAAAGCACATGTTCCCCTGTCGGATTTGATCCGTGTCATTATTCGAAAACCTGTCATTTTCTTTGTTTTTCCAAAAAGAGACCGAAATTTCAATAATTGTTTGTGTCTGCTTCATGATTCATGTGACACCTCAAAAAGAGCTACAGTAATCTCAATTTCAGGTTCACGAAGCGACATCCGGCTCAATGCCAGACCCGAGTCAAGATGTGACGGATTGTGTTGTGTGTGGGGATAAATCAAGTGGAAAACATTACGGACAATTCAGTTGTGAGGGATGCAAGAGTTTCTTTAAAAGGTATACAGAAGACACGAGTTCACTAAGGTTTTTTTAGCTTTTTGAGGGTGATCGAGAGCCAAATGAAGAGCCCAATGTTGGCAAAGCAGAGGAAGATAAGGGCTCCGGTTAGACCTCCGTAGACTGTCACGAATCCTTTTCTGAAAAAATTTAGATTCAGAAGTTTTAGTAGATTT</canonical>
            <polymorphic>TCAAAATTTCCCAGGTGGACCCATGAAATCATATTTTAGATTCAGAGAAAACTCATAACGTTTTGAAATTCAAGCTTTCTGTTTTTGGCTGGTTTTGCTAAATACCATACTGTTTTTATGGTTTTAGTAGGTTAAAATTCGGTCGTTCTAAATTTTAAAGAATCTTTTCTCTATCTGTTCATCTTCCTATTCTTGCCTACTAAACCCCATCGAACTTTTTTATATCGCCTCCTGATGACTTCCGAAAATACTCTTTGCTCCTGCCAACTTTATAGATTTCGTTTTTTTTTTCAACCTCCCGAAAAATATATAATTCATTTGCGGAGAGCCGCAAGATCCATCGTTAAATGTTAATAAAACCTCTCGTGGTGGTGCCTCTCTAAATCGACGCCTTCGCATTTTGGCGCGAGGGAGGGGACGAATAATTTCGACGAGATAATGATCATAAAATGATGAGAAGAGGATGAGGGAGGAGGCTTTCCCCCTGTCGGTGCCTTTTYACAGATCCTTGTGGCTCTCAGCAGGAGGTAAAAGCACATGTTCCCCTGTCGGATTTGATCCGTGTCATTATTCGAAAACCTGTCATTTTCTTTGTTTTTCCAAAAAGAGACCGAAATTTCAATAATTGTTTGTGTCTGCTTCATGATTCATGTGACACCTCAAAAAGAGCTACAGTAATCTCAATTTCAGGTTCACGAAGCGACATCCGGCTCAATGCCAGACCCGAGTCAAGATGTGACGGATTGTGTTGTGTGTGGGGATAAATCAAGTGGAAAACATTACGGACAATTCAGTTGTGAGGGATGCAAGAGTTTCTTTAAAAGGTATACAGAAGACACGAGTTCACTAAGGTTTTTTTAGCTTTTTGAGGGTGATCGAGAGCCAAATGAAGAGCCCAATGTTGGCAAAGCAGAGGAAGATAAGGGCTCCGGTTAGACCTCCGTAGACTGTCACGAATCCTTTTCTGAAAAAATTTAGATTCAGAAGTTTTAGTAGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>351 119 79 70 47 43 39 38 28 28 27 23 20 17 15 12 10 8 8 5 3 3 3 2 2</canonical_bands>
                <polymorphic_bands>351 119 79 70 47 43 39 38 28 28 27 23 20 20 17 15 10 8 5 3 3 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAATGATGAGAAGAGGATGAG</pcr_primer_p1>
		<pcr_primer_p2>TGAACCTGAAATTGAGATTACTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAAATGATGAGAAGAGGATGAGGGAGGAGGCTTTCCCCCTGTCGGTGCCTTTTCACAGATCCTTGTGGCTCTCAGCAGGAGGTAAAAGCACATGTTCCCCTGTCGGATTTGATCCGTGTCATTATTCGAAAACCTGTCATTTTCTTTGTTTTTCCAAAAAGAGACCGAAATTTCAATAATTGTTTGTGTCTGCTTCATGATTCATGTGACACCTCAAAAAGAGCTACAGTAATCTCAATTTCAGGTTCA</canonical_amplicon>
		<polymorphic_amplicon>TAAAATGATGAGAAGAGGATGAGGGAGGAGGCTTTCCCCCTGTCGGTGCCTTTTYACAGATCCTTGTGGCTCTCAGCAGGAGGTAAAAGCACATGTTCCCCTGTCGGATTTGATCCGTGTCATTATTCGAAAACCTGTCATTTTCTTTGTTTTTCCAAAAAGAGACCGAAATTTCAATAATTGTTTGTGTCTGCTTCATGATTCATGTGACACCTCAAAAAGAGCTACAGTAATCTCAATTTCAGGTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19152</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>175552</contig_pos>
        <strand>+</strand>
        <context>TCCGTGTCAT[C/T]ATTCGAAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGCAGGAGGTAAAAGCACATGTTCCCCTGTCGGATTTGATCCGTGTCAT</left_flank>
        <right_flank>ATTCGAAAACCTGTCATTTTCTTTGTTTTTCCAAAAAGAGACCGAAATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAGCTTTCTGTTTTTGGCTGGTTTTGCTAAATACCATACTGTTTTTATGGTTTTAGTAGGTTAAAATTCGGTCGTTCTAAATTTTAAAGAATCTTTTCTCTATCTGTTCATCTTCCTATTCTTGCCTACTAAACCCCATCGAACTTTTTTATATCGCCTCCTGATGACTTCCGAAAATACTCTTTGCTCCTGCCAACTTTATAGATTTCGTTTTTTTTTTCAACCTCCCGAAAAATATATAATTCATTTGCGGAGAGCCGCAAGATCCATCGTTAAATGTTAATAAAACCTCTCGTGGTGGTGCCTCTCTAAATCGACGCCTTCGCATTTTGGCGCGAGGGAGGGGACGAATAATTTCGACGAGATAATGATCATAAAATGATGAGAAGAGGATGAGGGAGGAGGCTTTCCCCCTGTCGGTGCCTTTTCACAGATCCTTGTGGCTCTCAGCAGGAGGTAAAAGCACATGTTCCCCTGTCGGATTTGATCCGTGTCATTATTCGAAAACCTGTCATTTTCTTTGTTTTTCCAAAAAGAGACCGAAATTTCAATAATTGTTTGTGTCTGCTTCATGATTCATGTGACACCTCAAAAAGAGCTACAGTAATCTCAATTTCAGGTTCACGAAGCGACATCCGGCTCAATGCCAGACCCGAGTCAAGATGTGACGGATTGTGTTGTGTGTGGGGATAAATCAAGTGGAAAACATTACGGACAATTCAGTTGTGAGGGATGCAAGAGTTTCTTTAAAAGGTATACAGAAGACACGAGTTCACTAAGGTTTTTTTAGCTTTTTGAGGGTGATCGAGAGCCAAATGAAGAGCCCAATGTTGGCAAAGCAGAGGAAGATAAGGGCTCCGGTTAGACCTCCGTAGACTGTCACGAATCCTTTTCTGAAAAAATTTAGATTCAGAAGTTTTAGTAGATTTTAGAAATTTTTTTGTTTCTTCAACATCAACTTACACTCTCTTTTCAACCAGAGCCATATGAGTTCTATT</canonical>
            <polymorphic>TCAAGCTTTCTGTTTTTGGCTGGTTTTGCTAAATACCATACTGTTTTTATGGTTTTAGTAGGTTAAAATTCGGTCGTTCTAAATTTTAAAGAATCTTTTCTCTATCTGTTCATCTTCCTATTCTTGCCTACTAAACCCCATCGAACTTTTTTATATCGCCTCCTGATGACTTCCGAAAATACTCTTTGCTCCTGCCAACTTTATAGATTTCGTTTTTTTTTTCAACCTCCCGAAAAATATATAATTCATTTGCGGAGAGCCGCAAGATCCATCGTTAAATGTTAATAAAACCTCTCGTGGTGGTGCCTCTCTAAATCGACGCCTTCGCATTTTGGCGCGAGGGAGGGGACGAATAATTTCGACGAGATAATGATCATAAAATGATGAGAAGAGGATGAGGGAGGAGGCTTTCCCCCTGTCGGTGCCTTTTCACAGATCCTTGTGGCTCTCAGCAGGAGGTAAAAGCACATGTTCCCCTGTCGGATTTGATCCGTGTCATYATTCGAAAACCTGTCATTTTCTTTGTTTTTCCAAAAAGAGACCGAAATTTCAATAATTGTTTGTGTCTGCTTCATGATTCATGTGACACCTCAAAAAGAGCTACAGTAATCTCAATTTCAGGTTCACGAAGCGACATCCGGCTCAATGCCAGACCCGAGTCAAGATGTGACGGATTGTGTTGTGTGTGGGGATAAATCAAGTGGAAAACATTACGGACAATTCAGTTGTGAGGGATGCAAGAGTTTCTTTAAAAGGTATACAGAAGACACGAGTTCACTAAGGTTTTTTTAGCTTTTTGAGGGTGATCGAGAGCCAAATGAAGAGCCCAATGTTGGCAAAGCAGAGGAAGATAAGGGCTCCGGTTAGACCTCCGTAGACTGTCACGAATCCTTTTCTGAAAAAATTTAGATTCAGAAGTTTTAGTAGATTTTAGAAATTTTTTTGTTTCTTCAACATCAACTTACACTCTCTTTTCAACCAGAGCCATATGAGTTCTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAATGATGAGAAGAGGATGAG</pcr_primer_p1>
		<pcr_primer_p2>TGAACCTGAAATTGAGATTACTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAAATGATGAGAAGAGGATGAGGGAGGAGGCTTTCCCCCTGTCGGTGCCTTTTCACAGATCCTTGTGGCTCTCAGCAGGAGGTAAAAGCACATGTTCCCCTGTCGGATTTGATCCGTGTCATTATTCGAAAACCTGTCATTTTCTTTGTTTTTCCAAAAAGAGACCGAAATTTCAATAATTGTTTGTGTCTGCTTCATGATTCATGTGACACCTCAAAAAGAGCTACAGTAATCTCAATTTCAGGTTCA</canonical_amplicon>
		<polymorphic_amplicon>TAAAATGATGAGAAGAGGATGAGGGAGGAGGCTTTCCCCCTGTCGGTGCCTTTTCACAGATCCTTGTGGCTCTCAGCAGGAGGTAAAAGCACATGTTCCCCTGTCGGATTTGATCCGTGTCATYATTCGAAAACCTGTCATTTTCTTTGTTTTTCCAAAAAGAGACCGAAATTTCAATAATTGTTTGTGTCTGCTTCATGATTCATGTGACACCTCAAAAAGAGCTACAGTAATCTCAATTTCAGGTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19153</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>178680</contig_pos>
        <strand>+</strand>
        <context>TTAAAAAATT[A/T]TTGATCAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACGGTAGTTGGGTTGATTTTGAACTAAACGACAACCAAATTTAAAAAATT</left_flank>
        <right_flank>TTGATCAAATTTATAAATACACATGGCTTACAGAGATACCCCCAGCTATG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCACTTCAATTCTCTCCGAAATTTATACGCTCTCTTTTAGTCGTTTCCGAAATAGATAACGCCGTTCTTCTTCTTCTCCTTTTTTCGTCGACACCGCCAAATGACTTCTGAATTGTTGAAATAAAATATACGTTTTCAGATGAGGAGCCATTGGAGGAGAAGATCAAAATTGATGAAATTGTGGAGAAGTTAACATCAGCAATAGACGAATATTGCAAAATGAACAAGAGAAATGAGGTTAGGATTACATAACCTGATAGAAGCCAAACCTACTTTGAGCTTAATGATTTCGGTTCCTTCAAGAAATATATAACAAATTTCAACTGATAAACTATTTATCATAATATCACCATTATTTGATCAGTTGACAGGTTTTTGATATCTTTTGAAAGAACAGAGATAATTTATCTCAAAGCGCACATGTATTTTCTCTTTTATTAAAGAAAATACGGTAGTTGGGTTGATTTTGAACTAAACGACAACCAAATTTAAAAAATTTTTGATCAAATTTATAAATACACATGGCTTACAGAGATACCCCCAGCTATGCGAATGTCTTGAGGTTCTAAAATCCACGCGACACCTTCCGATCTCTCGACTCTTCTTCTCACGTCTTCTTGGCACGACTCCACTCGAATCGATTCTCTGTGATCTTCTCAATTCTCCGCTCCCACCGCCGCCAACATTACCACTTTTCCCCCAGTTTCCTCCTAGAACATAAACTACTTTTCTTTCGATTCTTTTGAAACATTTCGTTCCTGTGACCGAACACATCCCGATGATATTATCTATAAATCGTTTCTAGTCATTTCGTTAAATTACAGCTTTTACAAAATTGTATATTCATCCAGTCTCCCAAACGTTACTCTGATGTCAATAAACTTTTCTTTTTTCCTATTTTTTTTCTCAAGAACCATTTACATATTGACATTTGGTCCGCCCGCCACATACCGTAGGCAGATGTGTGAGCCGCCCGTATGATCGTCGCGGGAGTCATTC</canonical>
            <polymorphic>CGCACTTCAATTCTCTCCGAAATTTATACGCTCTCTTTTAGTCGTTTCCGAAATAGATAACGCCGTTCTTCTTCTTCTCCTTTTTTCGTCGACACCGCCAAATGACTTCTGAATTGTTGAAATAAAATATACGTTTTCAGATGAGGAGCCATTGGAGGAGAAGATCAAAATTGATGAAATTGTGGAGAAGTTAACATCAGCAATAGACGAATATTGCAAAATGAACAAGAGAAATGAGGTTAGGATTACATAACCTGATAGAAGCCAAACCTACTTTGAGCTTAATGATTTCGGTTCCTTCAAGAAATATATAACAAATTTCAACTGATAAACTATTTATCATAATATCACCATTATTTGATCAGTTGACAGGTTTTTGATATCTTTTGAAAGAACAGAGATAATTTATCTCAAAGCGCACATGTATTTTCTCTTTTATTAAAGAAAATACGGTAGTTGGGTTGATTTTGAACTAAACGACAACCAAATTTAAAAAATTWTTGATCAAATTTATAAATACACATGGCTTACAGAGATACCCCCAGCTATGCGAATGTCTTGAGGTTCTAAAATCCACGCGACACCTTCCGATCTCTCGACTCTTCTTCTCACGTCTTCTTGGCACGACTCCACTCGAATCGATTCTCTGTGATCTTCTCAATTCTCCGCTCCCACCGCCGCCAACATTACCACTTTTCCCCCAGTTTCCTCCTAGAACATAAACTACTTTTCTTTCGATTCTTTTGAAACATTTCGTTCCTGTGACCGAACACATCCCGATGATATTATCTATAAATCGTTTCTAGTCATTTCGTTAAATTACAGCTTTTACAAAATTGTATATTCATCCAGTCTCCCAAACGTTACTCTGATGTCAATAAACTTTTCTTTTTTCCTATTTTTTTTCTCAAGAACCATTTACATATTGACATTTGGTCCGCCCGCCACATACCGTAGGCAGATGTGTGAGCCGCCCGTATGATCGTCGCGGGAGTCATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>493 296 170 20 12 9</canonical_bands>
                <polymorphic_bands>493 296 170 21 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATACGGTAGTTGGGTTGAT</pcr_primer_p1>
		<pcr_primer_p2>GAGAATTGAGAAGATCACAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>221</pcr_amplicon_size>
		<canonical_amplicon>AAATACGGTAGTTGGGTTGATTTTGAACTAAACGACAACCAAATTTAAAAAATTTTTGATCAAATTTATAAATACACATGGCTTACAGAGATACCCCCAGCTATGCGAATGTCTTGAGGTTCTAAAATCCACGCGACACCTTCCGATCTCTCGACTCTTCTTCTCACGTCTTCTTGGCACGACTCCACTCGAATCGATTCTCTGTGATCTTCTCAATTCTC</canonical_amplicon>
		<polymorphic_amplicon>AAATACGGTAGTTGGGTTGATTTTGAACTAAACGACAACCAAATTTAAAAAATTWTTGATCAAATTTATAAATACACATGGCTTACAGAGATACCCCCAGCTATGCGAATGTCTTGAGGTTCTAAAATCCACGCGACACCTTCCGATCTCTCGACTCTTCTTCTCACGTCTTCTTGGCACGACTCCACTCGAATCGATTCTCTGTGATCTTCTCAATTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19154</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>227802</contig_pos>
        <strand>+</strand>
        <context>AAAATGGCGG[C/T]GGTCTATTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGACGCACAACAACTGGCATCGCTTGATGACTATGGACAAAAAATGGCGG</left_flank>
        <right_flank>GGTCTATTCATAACTGGGATTGCTTGAACAGGAAAAGAATTGACTTGGTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTTGCTAGAGACACTTCACAATCAATAACTTCCTGTTCCATAGCAGTAGCTGCCTCTGCGACATCCTTCCCGTTCAAATCATCTACCTCTTTTTCAGATTGGACAATATCAGGTTTTACATCCTTCTGTTCCTTTCTCTCTGGTGACTCTTCTTGTTTCTCAGCGACGTTTGTTTTAGCACTCTTGTCTAACTTTGTTTTTTTCTTATCTTTCTTCTTATTCTGAGTCTCATCCTTCTTGGACGAGGAAGACGACGACTGTTCTTGTGGTGCTGTAATGGGAAGAGGGTTACGTGCTTGTCGTACGAGTGGTCGTTGGTTTGGATAGACGGCAGTGATCTGTTGCATAGGTCCAACGTGTAGTGGACGCATTGGTCCGGCCTGTCGATGCTGTTGCAAAGGTCCGCCTTGTAGTGGATGCATTGGGTTGGCTTGTGGATGCTGTGGCGGACGCACAACAACTGGCATCGCTTGATGACTATGGACAAAAAATGGCGGTGGTCTATTCATAACTGGGATTGCTTGAACAGGAAAAGAATTGACTTGGTACGGCGCTCCAGGATACTGAGTAACTGGAGGACCTGTGAAAGCAGGTCCCACCGAAACGTATCCTGGCGGAGGTTGCATTTTCACGAATCCATTCATCGGCGGAGGTCCCATCACTGGAGGTCCCATTATTGCCGGACCCATCATTGGATGACTCTGGTGCGGAAGTCTTCCGAATGGATGGGTCATTTGGTTTATTTGCTGATGTGGATGGGGCTGCGGATGCGGTAGCGGCGGAGGCGGAGGTGGAGGTGGTGGGGTTGATGATCGCTGTGGCGGCGGCGGAGGCGTTGGTAGACATCGTGAAGGCGGCGGTGGTGAAGAACAGCAAAAGGAAACAATCGGGGCACTATGGAATGGAACAGTGACGGGTTCGTCTTCAGGAATGTCAAATACTGAGTTTGATGAGGAAGTTCCAGCAGTATTGTGAGAGGAGTCTTCTGCCGTCTGTGA</canonical>
            <polymorphic>CAGTTGCTAGAGACACTTCACAATCAATAACTTCCTGTTCCATAGCAGTAGCTGCCTCTGCGACATCCTTCCCGTTCAAATCATCTACCTCTTTTTCAGATTGGACAATATCAGGTTTTACATCCTTCTGTTCCTTTCTCTCTGGTGACTCTTCTTGTTTCTCAGCGACGTTTGTTTTAGCACTCTTGTCTAACTTTGTTTTTTTCTTATCTTTCTTCTTATTCTGAGTCTCATCCTTCTTGGACGAGGAAGACGACGACTGTTCTTGTGGTGCTGTAATGGGAAGAGGGTTACGTGCTTGTCGTACGAGTGGTCGTTGGTTTGGATAGACGGCAGTGATCTGTTGCATAGGTCCAACGTGTAGTGGACGCATTGGTCCGGCCTGTCGATGCTGTTGCAAAGGTCCGCCTTGTAGTGGATGCATTGGGTTGGCTTGTGGATGCTGTGGCGGACGCACAACAACTGGCATCGCTTGATGACTATGGACAAAAAATGGCGGYGGTCTATTCATAACTGGGATTGCTTGAACAGGAAAAGAATTGACTTGGTACGGCGCTCCAGGATACTGAGTAACTGGAGGACCTGTGAAAGCAGGTCCCACCGAAACGTATCCTGGCGGAGGTTGCATTTTCACGAATCCATTCATCGGCGGAGGTCCCATCACTGGAGGTCCCATTATTGCCGGACCCATCATTGGATGACTCTGGTGCGGAAGTCTTCCGAATGGATGGGTCATTTGGTTTATTTGCTGATGTGGATGGGGCTGCGGATGCGGTAGCGGCGGAGGCGGAGGTGGAGGTGGTGGGGTTGATGATCGCTGTGGCGGCGGCGGAGGCGTTGGTAGACATCGTGAAGGCGGCGGTGGTGAAGAACAGCAAAAGGAAACAATCGGGGCACTATGGAATGGAACAGTGACGGGTTCGTCTTCAGGAATGTCAAATACTGAGTTTGATGAGGAAGTTCCAGCAGTATTGTGAGAGGAGTCTTCTGCCGTCTGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>127 88 86 62 51 47 46 45 39 35 33 30 30 29 26 24 23 23 21 18 18 15 15 13 12 9 9 6 5 5 3 3 3 1</canonical_bands>
                <polymorphic_bands>131 127 88 62 51 47 46 39 35 33 30 30 29 26 24 23 23 21 18 18 15 15 13 12 9 9 6 5 5 3 3 3 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCATAGGTCCAACGTGTAGT</pcr_primer_p1>
		<pcr_primer_p2>TTTCACAGGTCCTCCAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GCATAGGTCCAACGTGTAGTGGACGCATTGGTCCGGCCTGTCGATGCTGTTGCAAAGGTCCGCCTTGTAGTGGATGCATTGGGTTGGCTTGTGGATGCTGTGGCGGACGCACAACAACTGGCATCGCTTGATGACTATGGACAAAAAATGGCGGTGGTCTATTCATAACTGGGATTGCTTGAACAGGAAAAGAATTGACTTGGTACGGCGCTCCAGGATACTGAGTAACTGGAGGACCTGTGAAA</canonical_amplicon>
		<polymorphic_amplicon>GCATAGGTCCAACGTGTAGTGGACGCATTGGTCCGGCCTGTCGATGCTGTTGCAAAGGTCCGCCTTGTAGTGGATGCATTGGGTTGGCTTGTGGATGCTGTGGCGGACGCACAACAACTGGCATCGCTTGATGACTATGGACAAAAAATGGCGGYGGTCTATTCATAACTGGGATTGCTTGAACAGGAAAAGAATTGACTTGGTACGGCGCTCCAGGATACTGAGTAACTGGAGGACCTGTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19155</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>228004</contig_pos>
        <strand>+</strand>
        <context>CATTGGATGA[C/T]TCTGGTGCGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGGTCCCATCACTGGAGGTCCCATTATTGCCGGACCCATCATTGGATGA</left_flank>
        <right_flank>TCTGGTGCGGAAGTCTTCCGAATGGATGGGTCATTTGGTTTATTTGCTGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTTATCTTTCTTCTTATTCTGAGTCTCATCCTTCTTGGACGAGGAAGACGACGACTGTTCTTGTGGTGCTGTAATGGGAAGAGGGTTACGTGCTTGTCGTACGAGTGGTCGTTGGTTTGGATAGACGGCAGTGATCTGTTGCATAGGTCCAACGTGTAGTGGACGCATTGGTCCGGCCTGTCGATGCTGTTGCAAAGGTCCGCCTTGTAGTGGATGCATTGGGTTGGCTTGTGGATGCTGTGGCGGACGCACAACAACTGGCATCGCTTGATGACTATGGACAAAAAATGGCGGTGGTCTATTCATAACTGGGATTGCTTGAACAGGAAAAGAATTGACTTGGTACGGCGCTCCAGGATACTGAGTAACTGGAGGACCTGTGAAAGCAGGTCCCACCGAAACGTATCCTGGCGGAGGTTGCATTTTCACGAATCCATTCATCGGCGGAGGTCCCATCACTGGAGGTCCCATTATTGCCGGACCCATCATTGGATGACTCTGGTGCGGAAGTCTTCCGAATGGATGGGTCATTTGGTTTATTTGCTGATGTGGATGGGGCTGCGGATGCGGTAGCGGCGGAGGCGGAGGTGGAGGTGGTGGGGTTGATGATCGCTGTGGCGGCGGCGGAGGCGTTGGTAGACATCGTGAAGGCGGCGGTGGTGAAGAACAGCAAAAGGAAACAATCGGGGCACTATGGAATGGAACAGTGACGGGTTCGTCTTCAGGAATGTCAAATACTGAGTTTGATGAGGAAGTTCCAGCAGTATTGTGAGAGGAGTCTTCTGCCGTCTGTGATGTGTTTCGGCGCGGAGTAAACTCTTGTACTTGCCGTACCTCACCGCGCACTACAATTTCGAATGTTGGTTTTGTATCAATGGCCTCCATTTTAACCACTTCCTGTTGGTTCCGATGGATTTCCTGATGTTTGCCTTTTGGTAGATGTTCTTCGTTGTTTCGCTCTAACGAGTTACTCGAAACATATATTTCCAGTTTCACG</canonical>
            <polymorphic>TTTCTTATCTTTCTTCTTATTCTGAGTCTCATCCTTCTTGGACGAGGAAGACGACGACTGTTCTTGTGGTGCTGTAATGGGAAGAGGGTTACGTGCTTGTCGTACGAGTGGTCGTTGGTTTGGATAGACGGCAGTGATCTGTTGCATAGGTCCAACGTGTAGTGGACGCATTGGTCCGGCCTGTCGATGCTGTTGCAAAGGTCCGCCTTGTAGTGGATGCATTGGGTTGGCTTGTGGATGCTGTGGCGGACGCACAACAACTGGCATCGCTTGATGACTATGGACAAAAAATGGCGGTGGTCTATTCATAACTGGGATTGCTTGAACAGGAAAAGAATTGACTTGGTACGGCGCTCCAGGATACTGAGTAACTGGAGGACCTGTGAAAGCAGGTCCCACCGAAACGTATCCTGGCGGAGGTTGCATTTTCACGAATCCATTCATCGGCGGAGGTCCCATCACTGGAGGTCCCATTATTGCCGGACCCATCATTGGATGAYTCTGGTGCGGAAGTCTTCCGAATGGATGGGTCATTTGGTTTATTTGCTGATGTGGATGGGGCTGCGGATGCGGTAGCGGCGGAGGCGGAGGTGGAGGTGGTGGGGTTGATGATCGCTGTGGCGGCGGCGGAGGCGTTGGTAGACATCGTGAAGGCGGCGGTGGTGAAGAACAGCAAAAGGAAACAATCGGGGCACTATGGAATGGAACAGTGACGGGTTCGTCTTCAGGAATGTCAAATACTGAGTTTGATGAGGAAGTTCCAGCAGTATTGTGAGAGGAGTCTTCTGCCGTCTGTGATGTGTTTCGGCGCGGAGTAAACTCTTGTACTTGCCGTACCTCACCGCGCACTACAATTTCGAATGTTGGTTTTGTATCAATGGCCTCCATTTTAACCACTTCCTGTTGGTTCCGATGGATTTCCTGATGTTTGCCTTTTGGTAGATGTTCTTCGTTGTTTCGCTCTAACGAGTTACTCGAAACATATATTTCCAGTTTCACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCTATTCATAACTGGGATTG</pcr_primer_p1>
		<pcr_primer_p2>CATCAGCAAATAAACCAAATG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GGTCTATTCATAACTGGGATTGCTTGAACAGGAAAAGAATTGACTTGGTACGGCGCTCCAGGATACTGAGTAACTGGAGGACCTGTGAAAGCAGGTCCCACCGAAACGTATCCTGGCGGAGGTTGCATTTTCACGAATCCATTCATCGGCGGAGGTCCCATCACTGGAGGTCCCATTATTGCCGGACCCATCATTGGATGACTCTGGTGCGGAAGTCTTCCGAATGGATGGGTCATTTGGTTTATTTGCTGATG</canonical_amplicon>
		<polymorphic_amplicon>GGTCTATTCATAACTGGGATTGCTTGAACAGGAAAAGAATTGACTTGGTACGGCGCTCCAGGATACTGAGTAACTGGAGGACCTGTGAAAGCAGGTCCCACCGAAACGTATCCTGGCGGAGGTTGCATTTTCACGAATCCATTCATCGGCGGAGGTCCCATCACTGGAGGTCCCATTATTGCCGGACCCATCATTGGATGAYTCTGGTGCGGAAGTCTTCCGAATGGATGGGTCATTTGGTTTATTTGCTGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19156</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>305165</contig_pos>
        <strand>+</strand>
        <context>GGTTTGGCGG[C/T]CCTCGCCGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATTGACTTGATAATTCTAAGAACATAAAATTTCAGCGCGGTTTGGCGG</left_flank>
        <right_flank>CCTCGCCGGAGTTACTGCCGCTTCCGGTATGGGACTCGTTTACGCTTTGG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTAGTGCTATATGTTGAGAGACGCAGAGGTTGCGCTAAATGCGCTAGCAAAAAGTTGGCGCGATTGTTGATGACCGTGCTGTAAAATATCTCGGTTTTGCTCTATTTTTTCTTTTTTTAGTGCAATAAAACCGTTTATCTGAAACCTTTAGATAACCTGAAGATAAGTTAACATAACTGATTTTCAAATACTCTTCGTCGTTTTGTTTGGAATTGTGAAACAGCCCAATTTTCTCAATTTAGGAAAGTCTGAAATTCCAATTTATCGTTCATATTCTTTTTTATATATAGTCACATCTTTTGAATGGATGATTGTTTTCAGGTAATCGACGTGGTGCGTAATGCAGCGTGCCGTTGTTCAAGGGTCTAAAGTAAGCTTTCCTTCTTCCTTAACGAAGTTCGCATATAATAGAAACTTCAGATGTTAAAATAATAGAAACAGAGATGTTCAATTGACTTGATAATTCTAAGAACATAAAATTTCAGCGCGGTTTGGCGGCCCTCGCCGGAGTTACTGCCGCTTCCGGTATGGGACTCGTTTACGCTTTGGAGAACTCGGTCAGCGCCAGTGGAGATAATGTACACCCATATGCGTTGCCATGGGCACACAGTGGACCATTTTCATCCTTCGATATTGCCTCGTAAGCTAAATTTTAAAAAATCTCAATCAACTGAAACCTTCAGAGTACGACGTGGTTACGAAGTCTACAAACAAGTTTGTGCTGCCTGCCACTCGATGAAGTTCTTGCATTACCGTCACTTTGTAGATACGATCATGACTGAGGTGAGATAATGTCTATGCTTATATTTCAAACTTGATATATTTCAGGAGGAAGCTAAAGCTGAAGCTGCTGATGCTCTCATCAACGACGTCGATGATAAAGGAGCTGCTATCCAACGTCCAGGAATTCTCACCGATAAGCTGCCAAATCCATATCCAAACAAGAAGGCTGCCGCTGCTGCTAACAACGGAGCTGCTCCACCAGATTTGTCTCTGATG</canonical>
            <polymorphic>AGTAGTGCTATATGTTGAGAGACGCAGAGGTTGCGCTAAATGCGCTAGCAAAAAGTTGGCGCGATTGTTGATGACCGTGCTGTAAAATATCTCGGTTTTGCTCTATTTTTTCTTTTTTTAGTGCAATAAAACCGTTTATCTGAAACCTTTAGATAACCTGAAGATAAGTTAACATAACTGATTTTCAAATACTCTTCGTCGTTTTGTTTGGAATTGTGAAACAGCCCAATTTTCTCAATTTAGGAAAGTCTGAAATTCCAATTTATCGTTCATATTCTTTTTTATATATAGTCACATCTTTTGAATGGATGATTGTTTTCAGGTAATCGACGTGGTGCGTAATGCAGCGTGCCGTTGTTCAAGGGTCTAAAGTAAGCTTTCCTTCTTCCTTAACGAAGTTCGCATATAATAGAAACTTCAGATGTTAAAATAATAGAAACAGAGATGTTCAATTGACTTGATAATTCTAAGAACATAAAATTTCAGCGCGGTTTGGCGGYCCTCGCCGGAGTTACTGCCGCTTCCGGTATGGGACTCGTTTACGCTTTGGAGAACTCGGTCAGCGCCAGTGGAGATAATGTACACCCATATGCGTTGCCATGGGCACACAGTGGACCATTTTCATCCTTCGATATTGCCTCGTAAGCTAAATTTTAAAAAATCTCAATCAACTGAAACCTTCAGAGTACGACGTGGTTACGAAGTCTACAAACAAGTTTGTGCTGCCTGCCACTCGATGAAGTTCTTGCATTACCGTCACTTTGTAGATACGATCATGACTGAGGTGAGATAATGTCTATGCTTATATTTCAAACTTGATATATTTCAGGAGGAAGCTAAAGCTGAAGCTGCTGATGCTCTCATCAACGACGTCGATGATAAAGGAGCTGCTATCCAACGTCCAGGAATTCTCACCGATAAGCTGCCAAATCCATATCCAAACAAGAAGGCTGCCGCTGCTGCTAACAACGGAGCTGCTCCACCAGATTTGTCTCTGATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>347 205 152 126 39 35 28 23 21 18 6</canonical_bands>
                <polymorphic_bands>347 205 173 126 39 35 28 23 18 6</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>224 190 152 147 123 39 35 28 26 24 6 6</canonical_bands>
                <polymorphic_bands>270 224 190 152 39 35 28 26 24 6 6</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>499 436 44 21</canonical_bands>
                <polymorphic_bands>520 436 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGCATATAATAGAAACTTCAGATG</pcr_primer_p1>
		<pcr_primer_p2>AATTTAGCTTACGAGGCAATATC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CGCATATAATAGAAACTTCAGATGTTAAAATAATAGAAACAGAGATGTTCAATTGACTTGATAATTCTAAGAACATAAAATTTCAGCGCGGTTTGGCGGCCCTCGCCGGAGTTACTGCCGCTTCCGGTATGGGACTCGTTTACGCTTTGGAGAACTCGGTCAGCGCCAGTGGAGATAATGTACACCCATATGCGTTGCCATGGGCACACAGTGGACCATTTTCATCCTTCGATATTGCCTCGTAAGCTAAATT</canonical_amplicon>
		<polymorphic_amplicon>CGCATATAATAGAAACTTCAGATGTTAAAATAATAGAAACAGAGATGTTCAATTGACTTGATAATTCTAAGAACATAAAATTTCAGCGCGGTTTGGCGGYCCTCGCCGGAGTTACTGCCGCTTCCGGTATGGGACTCGTTTACGCTTTGGAGAACTCGGTCAGCGCCAGTGGAGATAATGTACACCCATATGCGTTGCCATGGGCACACAGTGGACCATTTTCATCCTTCGATATTGCCTCGTAAGCTAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19157</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>307279</contig_pos>
        <strand></strand>
        <context>CATAAATACG[A/C]AATCACAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAGAAATTGAAAAAGACCGGTACTGAGAAAATAGTAGTATCATAAATACG</left_flank>
        <right_flank>AATCACAAAAATCCTATCGGTATATCTTCGCTGCTTCTCTCTGCTGTTGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCAAATTAATTTTTGATCTACAGAAAAAACGTGTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTATATCTGATTTTGTGGAGTTCCAAGATGATTCAAATGATTCTTAAAAAATTAATTAGTGGTTATAGATTCATGTATGGTCGTTTTCCGGAAGAAAAAAATGTCAAAAATGGTCGTTTTGAAAGGTTTTTTAAGAAAAACATCTATCTCCTCNNNNNNNNNNNNCGCACCACGTCGATTACCTGAAAACAATCATCCATTCAAAAGATGTGGCTATATATAAAAAAGAATATGAACGATAAATTGGAATTTCAGACTTTCCTAAATTGAGAAAATTGGGCTGTTTCGCAATTCCAAACAAAACGACGAAGAGTATTTGAAAATCAGTTATGTTAACTTATCTTCAGGCGACAATATCATATGGCGCATTGAGAAATTGAAAAAGACCGGTACTGAGAAAATAGTAGTATCATAAATACGAAATCACAAAAATCCTATCGGTATATCTTCGCTGCTTCTCTCTGCTGTTGTGTTCGTAGGAGTTGATAGATTCTCTTTCTCCAAATGCCATGTCTCATGAAATATGCTGTTACATGCCCATATCCTTCCATCATTTCAACTGTAACATTTGGCCACAATTGCTCATAAGTCGGTGTTCCCTGATTTCTGAGTACGTACTGATCCTGATCAGCAAGAAATACGTGGCAAAGTGAGGTGTCAATTGGAGTTGGATAGTTTTCAAGACTTGTGAAGTCATCCATCAGAATACGCATCATATTCTTGGCCATCGTATCTCCATTCTTCGCTGTCATCTCATGCATAGTGTCCAGCCAGTTTTGATTTGGAATATTTTTTATCTTGTCTGTGTAGTTTGGATCTTCCAATTGCTTCTGTAGTAACTTGTAGTTAACAGCAGGTGCAATTGCACCTTCCGTATAAGATGGTGACGCAGTAGTCCAAGAGAGAATCGGAATGATGGAA</canonical>
            <polymorphic>TGCAAATTAATTTTTGATCTACAGAAAAAACGTGTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTATATCTGATTTTGTGGAGTTCCAAGATGATTCAAATGATTCTTAAAAAATTAATTAGTGGTTATAGATTCATGTATGGTCGTTTTCCGGAAGAAAAAAATGTCAAAAATGGTCGTTTTGAAAGGTTTTTTAAGAAAAACATCTATCTCCTCNNNNNNNNNNNNCGCACCACGTCGATTACCTGAAAACAATCATCCATTCAAAAGATGTGGCTATATATAAAAAAGAATATGAACGATAAATTGGAATTTCAGACTTTCCTAAATTGAGAAAATTGGGCTGTTTCGCAATTCCAAACAAAACGACGAAGAGTATTTGAAAATCAGTTATGTTAACTTATCTTCAGGCGACAATATCATATGGCGCATTGAGAAATTGAAAAAGACCGGTACTGAGAAAATAGTAGTATCATAAATACGMAATCACAAAAATCCTATCGGTATATCTTCGCTGCTTCTCTCTGCTGTTGTGTTCGTAGGAGTTGATAGATTCTCTTTCTCCAAATGCCATGTCTCATGAAATATGCTGTTACATGCCCATATCCTTCCATCATTTCAACTGTAACATTTGGCCACAATTGCTCATAAGTCGGTGTTCCCTGATTTCTGAGTACGTACTGATCCTGATCAGCAAGAAATACGTGGCAAAGTGAGGTGTCAATTGGAGTTGGATAGTTTTCAAGACTTGTGAAGTCATCCATCAGAATACGCATCATATTCTTGGCCATCGTATCTCCATTCTTCGCTGTCATCTCATGCATAGTGTCCAGCCAGTTTTGATTTGGAATATTTTTTATCTTGTCTGTGTAGTTTGGATCTTCCAATTGCTTCTGTAGTAACTTGTAGTTAACAGCAGGTGCAATTGCACCTTCCGTATAAGATGGTGACGCAGTAGTCCAAGAGAGAATCGGAATGATGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAATTTCAGACTTTCCTAAA</pcr_primer_p1>
		<pcr_primer_p2>GAATCTATCAACTCCTACGAACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGGAATTTCAGACTTTCCTAAATTGAGAAAATTGGGCTGTTTCGCAATTCCAAACAAAACGACGAAGAGTATTTGAAAATCAGTTATGTTAACTTATCTTCAGGCGACAATATCATATGGCGCATTGAGAAATTGAAAAAGACCGGTACTGAGAAAATAGTAGTATCATAAATACGAAATCACAAAAATCCTATCGGTATATCTTCGCTGCTTCTCTCTGCTGTTGTGTTCGTAGGAGTTGATAGATTC</canonical_amplicon>
		<polymorphic_amplicon>TGGAATTTCAGACTTTCCTAAATTGAGAAAATTGGGCTGTTTCGCAATTCCAAACAAAACGACGAAGAGTATTTGAAAATCAGTTATGTTAACTTATCTTCAGGCGACAATATCATATGGCGCATTGAGAAATTGAAAAAGACCGGTACTGAGAAAATAGTAGTATCATAAATACGMAATCACAAAAATCCTATCGGTATATCTTCGCTGCTTCTCTCTGCTGTTGTGTTCGTAGGAGTTGATAGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19158</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>352974</contig_pos>
        <strand>+</strand>
        <context>TTCTAATTGT[A/T]CATTCGATTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAGAAGGTGGTCAAGTCATAAATCAAAAAGCAATACTTATTCTAATTGT</left_flank>
        <right_flank>CATTCGATTGGGGTTGGAATCACAGGTAGGTGGTTCGGACGATACCTATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGTCTATAACTCATCATGCTCGCCGCGAAACGACACTAAATCGTTCAGTTTACAAAAACCGCTGTCTGTCCCCTTTCTTTCTCACAAGGACATCAGGATCCAGGTTCACATTCATTTTTCAAGGCGCATCCCCCCTCTTCTCTACCAATTTCTTAATAATAGGCGCAAGCACAGAATGAACCGGTCAAAAGACACACCGACATCTGGTCATTTACTATTCGCTCTTCGTTTTTTCGGCCCCCATGAGCGGTTCTGTGCGCCGCGCCACTACAAAAAACCAACACATCCGAACACATATATAGACTACTACGGTAATCGTTTTCGGATTTCGATAGATATATAATTGGTTTGAATCTCAATATATATGGTATAACCAATTGTGTAAACCGATATTGTATTGGTCTGGATGTCCATCTAGTGCATCCCTCTCTCATCACATCTAGCTTTGAAGAAGGTGGTCAAGTCATAAATCAAAAAGCAATACTTATTCTAATTGTTCATTCGATTGGGGTTGGAATCACAGGTAGGTGGTTCGGACGATACCTATTCTCATCATCATCTTCTTGCCACATTTATCAAAAGTTTTCTCTTCATCATCCATCTCGTTCCCCTATTCTTTTTCTAAGCTGCTCCACTTATTCGCACATTGTAACCATATGGCTTGGTTAATGACAAAACCAATACAAACACTCTCACATCAACACTTTATGAAGAAGCGAACTGAGCACATTATATTATTAGCGGATGATGATGAGATGACTCCGAATGCTTGTGGCCACCAAAACGCAACACCACTTGACTCCGAGGTGAGAAGTGAATAGATACTGTGTCAATTAGGAGTTTCCTCCTCTTTTCTCAACAAGATCATTTCTATTGAGGCGTCATGTGTTCGTTGTCACTCATATCGCCACCTTGAATGCATCACAACAAATCATCGCTATGCAGTCCACGAACATGTTGAGTGAATCTTTGGAATGAAGGGGAAGTGGTATACTGTA</canonical>
            <polymorphic>TCGGTCTATAACTCATCATGCTCGCCGCGAAACGACACTAAATCGTTCAGTTTACAAAAACCGCTGTCTGTCCCCTTTCTTTCTCACAAGGACATCAGGATCCAGGTTCACATTCATTTTTCAAGGCGCATCCCCCCTCTTCTCTACCAATTTCTTAATAATAGGCGCAAGCACAGAATGAACCGGTCAAAAGACACACCGACATCTGGTCATTTACTATTCGCTCTTCGTTTTTTCGGCCCCCATGAGCGGTTCTGTGCGCCGCGCCACTACAAAAAACCAACACATCCGAACACATATATAGACTACTACGGTAATCGTTTTCGGATTTCGATAGATATATAATTGGTTTGAATCTCAATATATATGGTATAACCAATTGTGTAAACCGATATTGTATTGGTCTGGATGTCCATCTAGTGCATCCCTCTCTCATCACATCTAGCTTTGAAGAAGGTGGTCAAGTCATAAATCAAAAAGCAATACTTATTCTAATTGTWCATTCGATTGGGGTTGGAATCACAGGTAGGTGGTTCGGACGATACCTATTCTCATCATCATCTTCTTGCCACATTTATCAAAAGTTTTCTCTTCATCATCCATCTCGTTCCCCTATTCTTTTTCTAAGCTGCTCCACTTATTCGCACATTGTAACCATATGGCTTGGTTAATGACAAAACCAATACAAACACTCTCACATCAACACTTTATGAAGAAGCGAACTGAGCACATTATATTATTAGCGGATGATGATGAGATGACTCCGAATGCTTGTGGCCACCAAAACGCAACACCACTTGACTCCGAGGTGAGAAGTGAATAGATACTGTGTCAATTAGGAGTTTCCTCCTCTTTTCTCAACAAGATCATTTCTATTGAGGCGTCATGTGTTCGTTGTCACTCATATCGCCACCTTGAATGCATCACAACAAATCATCGCTATGCAGTCCACGAACATGTTGAGTGAATCTTTGGAATGAAGGGGAAGTGGTATACTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATATTGTATTGGTCTGGATGTC</pcr_primer_p1>
		<pcr_primer_p2>ATAAGTGGAGCAGCTTAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GATATTGTATTGGTCTGGATGTCCATCTAGTGCATCCCTCTCTCATCACATCTAGCTTTGAAGAAGGTGGTCAAGTCATAAATCAAAAAGCAATACTTATTCTAATTGTTCATTCGATTGGGGTTGGAATCACAGGTAGGTGGTTCGGACGATACCTATTCTCATCATCATCTTCTTGCCACATTTATCAAAAGTTTTCTCTTCATCATCCATCTCGTTCCCCTATTCTTTTTCTAAGCTGCTCCACTTAT</canonical_amplicon>
		<polymorphic_amplicon>GATATTGTATTGGTCTGGATGTCCATCTAGTGCATCCCTCTCTCATCACATCTAGCTTTGAAGAAGGTGGTCAAGTCATAAATCAAAAAGCAATACTTATTCTAATTGTWCATTCGATTGGGGTTGGAATCACAGGTAGGTGGTTCGGACGATACCTATTCTCATCATCATCTTCTTGCCACATTTATCAAAAGTTTTCTCTTCATCATCCATCTCGTTCCCCTATTCTTTTTCTAAGCTGCTCCACTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19159</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>353058</contig_pos>
        <strand>+</strand>
        <context>TTTATCAAAA[G/T]TTTTCTCTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCGGACGATACCTATTCTCATCATCATCTTCTTGCCACATTTATCAAAA</left_flank>
        <right_flank>TTTTCTCTTCATCATCCATCTCGTTCCCCTATTCTTTTTCTAAGCTGCTC</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACAAGGACATCAGGATCCAGGTTCACATTCATTTTTCAAGGCGCATCCCCCCTCTTCTCTACCAATTTCTTAATAATAGGCGCAAGCACAGAATGAACCGGTCAAAAGACACACCGACATCTGGTCATTTACTATTCGCTCTTCGTTTTTTCGGCCCCCATGAGCGGTTCTGTGCGCCGCGCCACTACAAAAAACCAACACATCCGAACACATATATAGACTACTACGGTAATCGTTTTCGGATTTCGATAGATATATAATTGGTTTGAATCTCAATATATATGGTATAACCAATTGTGTAAACCGATATTGTATTGGTCTGGATGTCCATCTAGTGCATCCCTCTCTCATCACATCTAGCTTTGAAGAAGGTGGTCAAGTCATAAATCAAAAAGCAATACTTATTCTAATTGTTCATTCGATTGGGGTTGGAATCACAGGTAGGTGGTTCGGACGATACCTATTCTCATCATCATCTTCTTGCCACATTTATCAAAAGTTTTCTCTTCATCATCCATCTCGTTCCCCTATTCTTTTTCTAAGCTGCTCCACTTATTCGCACATTGTAACCATATGGCTTGGTTAATGACAAAACCAATACAAACACTCTCACATCAACACTTTATGAAGAAGCGAACTGAGCACATTATATTATTAGCGGATGATGATGAGATGACTCCGAATGCTTGTGGCCACCAAAACGCAACACCACTTGACTCCGAGGTGAGAAGTGAATAGATACTGTGTCAATTAGGAGTTTCCTCCTCTTTTCTCAACAAGATCATTTCTATTGAGGCGTCATGTGTTCGTTGTCACTCATATCGCCACCTTGAATGCATCACAACAAATCATCGCTATGCAGTCCACGAACATGTTGAGTGAATCTTTGGAATGAAGGGGAAGTGGTATACTGTAGCAGACGGCGGTGATACTTCCACTAACAGTTGTTTATGTTTACATCTGTCTCTGGCGAGAGAATATCAAGTCGCACATGCAATT</canonical>
            <polymorphic>CACAAGGACATCAGGATCCAGGTTCACATTCATTTTTCAAGGCGCATCCCCCCTCTTCTCTACCAATTTCTTAATAATAGGCGCAAGCACAGAATGAACCGGTCAAAAGACACACCGACATCTGGTCATTTACTATTCGCTCTTCGTTTTTTCGGCCCCCATGAGCGGTTCTGTGCGCCGCGCCACTACAAAAAACCAACACATCCGAACACATATATAGACTACTACGGTAATCGTTTTCGGATTTCGATAGATATATAATTGGTTTGAATCTCAATATATATGGTATAACCAATTGTGTAAACCGATATTGTATTGGTCTGGATGTCCATCTAGTGCATCCCTCTCTCATCACATCTAGCTTTGAAGAAGGTGGTCAAGTCATAAATCAAAAAGCAATACTTATTCTAATTGTTCATTCGATTGGGGTTGGAATCACAGGTAGGTGGTTCGGACGATACCTATTCTCATCATCATCTTCTTGCCACATTTATCAAAAKTTTTCTCTTCATCATCCATCTCGTTCCCCTATTCTTTTTCTAAGCTGCTCCACTTATTCGCACATTGTAACCATATGGCTTGGTTAATGACAAAACCAATACAAACACTCTCACATCAACACTTTATGAAGAAGCGAACTGAGCACATTATATTATTAGCGGATGATGATGAGATGACTCCGAATGCTTGTGGCCACCAAAACGCAACACCACTTGACTCCGAGGTGAGAAGTGAATAGATACTGTGTCAATTAGGAGTTTCCTCCTCTTTTCTCAACAAGATCATTTCTATTGAGGCGTCATGTGTTCGTTGTCACTCATATCGCCACCTTGAATGCATCACAACAAATCATCGCTATGCAGTCCACGAACATGTTGAGTGAATCTTTGGAATGAAGGGGAAGTGGTATACTGTAGCAGACGGCGGTGATACTTCCACTAACAGTTGTTTATGTTTACATCTGTCTCTGGCGAGAGAATATCAAGTCGCACATGCAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGTCAAGTCATAAATCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GTGTTGATGTGAGAGTGTTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGGTCAAGTCATAAATCAAAAAGCAATACTTATTCTAATTGTTCATTCGATTGGGGTTGGAATCACAGGTAGGTGGTTCGGACGATACCTATTCTCATCATCATCTTCTTGCCACATTTATCAAAAGTTTTCTCTTCATCATCCATCTCGTTCCCCTATTCTTTTTCTAAGCTGCTCCACTTATTCGCACATTGTAACCATATGGCTTGGTTAATGACAAAACCAATACAAACACTCTCACATCAACAC</canonical_amplicon>
		<polymorphic_amplicon>GTGGTCAAGTCATAAATCAAAAAGCAATACTTATTCTAATTGTTCATTCGATTGGGGTTGGAATCACAGGTAGGTGGTTCGGACGATACCTATTCTCATCATCATCTTCTTGCCACATTTATCAAAAKTTTTCTCTTCATCATCCATCTCGTTCCCCTATTCTTTTTCTAAGCTGCTCCACTTATTCGCACATTGTAACCATATGGCTTGGTTAATGACAAAACCAATACAAACACTCTCACATCAACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19164</snp_id>
        <super_contig>c011600929.Contig1</super_contig>
        <contig_pos>6951</contig_pos>
        <strand></strand>
        <context>CCTAAATTTT[G/A]AGGAATTTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TATTTTTCGCGTTTTTTCCATCAATTTTCGGCAATTTTTACCTAAATTTT</left_flank>
        <right_flank>AGGAATTTACTCATCTTTTCTGCTTTTTTGGGTTTTTTGAAGTGAAAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAGAGACGAGAGAGCATAAATAGAGTGAGAGACGCAGAGAAATGAGTTAATTGGAAATTCGAGAAGCCACGAGAAGAGAGCACGGCGTCGAATCGATTTGAACAGAGCTGGTCCGGAAGAAGGAGAAGAAAAAGAAGGGGGAAATGCAGACAACACAAAAACACATGAATATTGGATTTTCCCCAGGAAACACTAGCAATTTGTACAAAAACAAGGGGAAAAACAGAGAAATTTATTTTTTTTTTCTTCTGAAAAATTTTTTTCTTGCAAATTTCAGCATTTTCCATGTCTTTTTACGCCTGAAACTACTGAAATCCTATTTTAAAAACGCGTTTTTTCTCTGTAAGAAAACCTCTTTTTCAAAAAACCGCGCAAAAACATCGCAAACGCGCGCCGCCGCACACCAGTTAGATGTGCAGGTTATACGGTAGGCGTCGGTTTTAGGCCTATTTTTCGCGTTTTTTCCATCAATTTTCGGCAATTTTTACCTAAATTTTGAGGAATTTACTCATCTTTTCTGCTTTTTTGGGTTTTTTGAAGTGAAAATTTTGATTATTCAGCACAAATTACATGGAAAATGCATATTTTTGCTCGGTTTTCTAGGAAATTCGTTGAGATTTTTGCTAAAATCCTGTTTTTCAGGTTTTAGGGTTTTTTCGTATATTTGCTGAAATTTCGATTTTTTTTCTTCTAAATACTCACAAAAATACCTCTTTTTGCTCGATTTTCCCTCCTAAAAATCGCATTTTTTCAGAACTAGGGTTTACAAGTCCAGCCATGGTCTTCGTCAAAACACTCAACAGAACCTTGTACCTCGAGGTCGCCGCCAACGAGGATGTCTTGAGCATCAAGCAAAAGATCGAGGCTGCCGAGGGTATCCCATCCGCTGAGCAGAGACTCGTCTTCGCCGGTTCGTTTCGTTTCACGCAGAATCTCGAGAAGCACCCCACCTAGGTTGGGCACTTTGAGGACAGACCCTGCTAGACACATTCTTGATT</canonical>
            <polymorphic>TCCAGAGACGAGAGAGCATAAATAGAGTGAGAGACGCAGAGAAATGAGTTAATTGGAAATTCGAGAAGCCACGAGAAGAGAGCACGGCGTCGAATCGATTTGAACAGAGCTGGTCCGGAAGAAGGAGAAGAAAAAGAAGGGGGAAATGCAGACAACACAAAAACACATGAATATTGGATTTTCCCCAGGAAACACTAGCAATTTGTACAAAAACAAGGGGAAAAACAGAGAAATTTATTTTTTTTTTCTTCTGAAAAATTTTTTTCTTGCAAATTTCAGCATTTTCCATGTCTTTTTACGCCTGAAACTACTGAAATCCTATTTTAAAAACGCGTTTTTTCTCTGTAAGAAAACCTCTTTTTCAAAAAACCGCGCAAAAACATCGCAAACGCGCGCCGCCGCACACCAGTTAGATGTGCAGGTTATACGGTAGGCGTCGGTTTTAGGCCTATTTTTCGCGTTTTTTCCATCAATTTTCGGCAATTTTTACCTAAATTTTRAGGAATTTACTCATCTTTTCTGCTTTTTTGGGTTTTTTGAAGTGAAAATTTTGATTATTCAGCACAAATTACATGGAAAATGCATATTTTTGCTCGGTTTTCTAGGAAATTCGTTGAGATTTTTGCTAAAATCCTGTTTTTCAGGTTTTAGGGTTTTTTCGTATATTTGCTGAAATTTCGATTTTTTTTCTTCTAAATACTCACAAAAATACCTCTTTTTGCTCGATTTTCCCTCCTAAAAATCGCATTTTTTCAGAACTAGGGTTTACAAGTCCAGCCATGGTCTTCGTCAAAACACTCAACAGAACCTTGTACCTCGAGGTCGCCGCCAACGAGGATGTCTTGAGCATCAAGCAAAAGATCGAGGCTGCCGAGGGTATCCCATCCGCTGAGCAGAGACTCGTCTTCGCCGGTTCGTTTCGTTTCACGCAGAATCTCGAGAAGCACCCCACCTAGGTTGGGCACTTTGAGGACAGACCCTGCTAGACACATTCTTGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCGGTTTTAGGCCTATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATCGAAATTTCAGCAAATATAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTCGGTTTTAGGCCTATTTTTCGCGTTTTTTCCATCAATTTTCGGCAATTTTTACCTAAATTTTGAGGAATTTACTCATCTTTTCTGCTTTTTTGGGTTTTTTGAAGTGAAAATTTTGATTATTCAGCACAAATTACATGGAAAATGCATATTTTTGCTCGGTTTTCTAGGAAATTCGTTGAGATTTTTGCTAAAATCCTGTTTTTCAGGTTTTAGGGTTTTTTCGTATATTTGCTGAAATTTCGATT</canonical_amplicon>
		<polymorphic_amplicon>GTCGGTTTTAGGCCTATTTTTCGCGTTTTTTCCATCAATTTTCGGCAATTTTTACCTAAATTTTRAGGAATTTACTCATCTTTTCTGCTTTTTTGGGTTTTTTGAAGTGAAAATTTTGATTATTCAGCACAAATTACATGGAAAATGCATATTTTTGCTCGGTTTTCTAGGAAATTCGTTGAGATTTTTGCTAAAATCCTGTTTTTCAGGTTTTAGGGTTTTTTCGTATATTTGCTGAAATTTCGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19165</snp_id>
        <super_contig>c011600929.Contig1</super_contig>
        <contig_pos>7003</contig_pos>
        <strand>+</strand>
        <context>GTGAAAATTT[C/T]GATTATTCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAATTTACTCATCTTTTCTGCTTTTTTGGGTTTTTTGAAGTGAAAATTT</left_flank>
        <right_flank>GATTATTCAGCACAAATTACATGGAAAATGCATATTTTTGCTCGGTTTTC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGAAATTCGAGAAGCCACGAGAAGAGAGCACGGCGTCGAATCGATTTGAACAGAGCTGGTCCGGAAGAAGGAGAAGAAAAAGAAGGGGGAAATGCAGACAACACAAAAACACATGAATATTGGATTTTCCCCAGGAAACACTAGCAATTTGTACAAAAACAAGGGGAAAAACAGAGAAATTTATTTTTTTTTTCTTCTGAAAAATTTTTTTCTTGCAAATTTCAGCATTTTCCATGTCTTTTTACGCCTGAAACTACTGAAATCCTATTTTAAAAACGCGTTTTTTCTCTGTAAGAAAACCTCTTTTTCAAAAAACCGCGCAAAAACATCGCAAACGCGCGCCGCCGCACACCAGTTAGATGTGCAGGTTATACGGTAGGCGTCGGTTTTAGGCCTATTTTTCGCGTTTTTTCCATCAATTTTCGGCAATTTTTACCTAAATTTTGAGGAATTTACTCATCTTTTCTGCTTTTTTGGGTTTTTTGAAGTGAAAATTTTGATTATTCAGCACAAATTACATGGAAAATGCATATTTTTGCTCGGTTTTCTAGGAAATTCGTTGAGATTTTTGCTAAAATCCTGTTTTTCAGGTTTTAGGGTTTTTTCGTATATTTGCTGAAATTTCGATTTTTTTTCTTCTAAATACTCACAAAAATACCTCTTTTTGCTCGATTTTCCCTCCTAAAAATCGCATTTTTTCAGAACTAGGGTTTACAAGTCCAGCCATGGTCTTCGTCAAAACACTCAACAGAACCTTGTACCTCGAGGTCGCCGCCAACGAGGATGTCTTGAGCATCAAGCAAAAGATCGAGGCTGCCGAGGGTATCCCATCCGCTGAGCAGAGACTCGTCTTCGCCGGTTCGTTTCGTTTCACGCAGAATCTCGAGAAGCACCCCACCTAGGTTGGGCACTTTGAGGACAGACCCTGCTAGACACATTCTTGATTTTTACCTGTTAAGGACGTCAGCTCGAGGATAGCGACTGCGGACTCGACGCCG</canonical>
            <polymorphic>TTGGAAATTCGAGAAGCCACGAGAAGAGAGCACGGCGTCGAATCGATTTGAACAGAGCTGGTCCGGAAGAAGGAGAAGAAAAAGAAGGGGGAAATGCAGACAACACAAAAACACATGAATATTGGATTTTCCCCAGGAAACACTAGCAATTTGTACAAAAACAAGGGGAAAAACAGAGAAATTTATTTTTTTTTTCTTCTGAAAAATTTTTTTCTTGCAAATTTCAGCATTTTCCATGTCTTTTTACGCCTGAAACTACTGAAATCCTATTTTAAAAACGCGTTTTTTCTCTGTAAGAAAACCTCTTTTTCAAAAAACCGCGCAAAAACATCGCAAACGCGCGCCGCCGCACACCAGTTAGATGTGCAGGTTATACGGTAGGCGTCGGTTTTAGGCCTATTTTTCGCGTTTTTTCCATCAATTTTCGGCAATTTTTACCTAAATTTTGAGGAATTTACTCATCTTTTCTGCTTTTTTGGGTTTTTTGAAGTGAAAATTTYGATTATTCAGCACAAATTACATGGAAAATGCATATTTTTGCTCGGTTTTCTAGGAAATTCGTTGAGATTTTTGCTAAAATCCTGTTTTTCAGGTTTTAGGGTTTTTTCGTATATTTGCTGAAATTTCGATTTTTTTTCTTCTAAATACTCACAAAAATACCTCTTTTTGCTCGATTTTCCCTCCTAAAAATCGCATTTTTTCAGAACTAGGGTTTACAAGTCCAGCCATGGTCTTCGTCAAAACACTCAACAGAACCTTGTACCTCGAGGTCGCCGCCAACGAGGATGTCTTGAGCATCAAGCAAAAGATCGAGGCTGCCGAGGGTATCCCATCCGCTGAGCAGAGACTCGTCTTCGCCGGTTCGTTTCGTTTCACGCAGAATCTCGAGAAGCACCCCACCTAGGTTGGGCACTTTGAGGACAGACCCTGCTAGACACATTCTTGATTTTTACCTGTTAAGGACGTCAGCTCGAGGATAGCGACTGCGGACTCGACGCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCGGTTTTAGGCCTATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATCGAAATTTCAGCAAATATAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTCGGTTTTAGGCCTATTTTTCGCGTTTTTTCCATCAATTTTCGGCAATTTTTACCTAAATTTTGAGGAATTTACTCATCTTTTCTGCTTTTTTGGGTTTTTTGAAGTGAAAATTTTGATTATTCAGCACAAATTACATGGAAAATGCATATTTTTGCTCGGTTTTCTAGGAAATTCGTTGAGATTTTTGCTAAAATCCTGTTTTTCAGGTTTTAGGGTTTTTTCGTATATTTGCTGAAATTTCGATT</canonical_amplicon>
		<polymorphic_amplicon>GTCGGTTTTAGGCCTATTTTTCGCGTTTTTTCCATCAATTTTCGGCAATTTTTACCTAAATTTTGAGGAATTTACTCATCTTTTCTGCTTTTTTGGGTTTTTTGAAGTGAAAATTTYGATTATTCAGCACAAATTACATGGAAAATGCATATTTTTGCTCGGTTTTCTAGGAAATTCGTTGAGATTTTTGCTAAAATCCTGTTTTTCAGGTTTTAGGGTTTTTTCGTATATTTGCTGAAATTTCGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19167</snp_id>
        <super_contig>c011600929.Contig1</super_contig>
        <contig_pos>7145</contig_pos>
        <strand>+</strand>
        <context>TTTTTTCTTC[A/T]AAATMCTCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTTTTAGGGTTTTTTCGTATATTTGCTGAAATTTCGATTTTTTTTCTTC</left_flank>
        <right_flank>AAATACTCACAAAAATACCTCTTTTTGCTCGATTTTCCCTCCTAAAAATC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGCAATTTGTACAAAAACAAGGGGAAAAACAGAGAAATTTATTTTTTTTTTCTTCTGAAAAATTTTTTTCTTGCAAATTTCAGCATTTTCCATGTCTTTTTACGCCTGAAACTACTGAAATCCTATTTTAAAAACGCGTTTTTTCTCTGTAAGAAAACCTCTTTTTCAAAAAACCGCGCAAAAACATCGCAAACGCGCGCCGCCGCACACCAGTTAGATGTGCAGGTTATACGGTAGGCGTCGGTTTTAGGCCTATTTTTCGCGTTTTTTCCATCAATTTTCGGCAATTTTTACCTAAATTTTGAGGAATTTACTCATCTTTTCTGCTTTTTTGGGTTTTTTGAAGTGAAAATTTTGATTATTCAGCACAAATTACATGGAAAATGCATATTTTTGCTCGGTTTTCTAGGAAATTCGTTGAGATTTTTGCTAAAATCCTGTTTTTCAGGTTTTAGGGTTTTTTCGTATATTTGCTGAAATTTCGATTTTTTTTCTTCTAAATACTCACAAAAATACCTCTTTTTGCTCGATTTTCCCTCCTAAAAATCGCATTTTTTCAGAACTAGGGTTTACAAGTCCAGCCATGGTCTTCGTCAAAACACTCAACAGAACCTTGTACCTCGAGGTCGCCGCCAACGAGGATGTCTTGAGCATCAAGCAAAAGATCGAGGCTGCCGAGGGTATCCCATCCGCTGAGCAGAGACTCGTCTTCGCCGGTTCGTTTCGTTTCACGCAGAATCTCGAGAAGCACCCCACCTAGGTTGGGCACTTTGAGGACAGACCCTGCTAGACACATTCTTGATTTTTACCTGTTAAGGACGTCAGCTCGAGGATAGCGACTGCGGACTCGACGCCGAGGCCACCATCTACGTCAACCTTGAGCTTCTCGGAGGAGCCAAGAAGAGAAAGAAGAAGGTCTACACCACTCCAAAGAAGAACAAGAGAAAGCCAAAGAAGGTCAAGCTCGCTGTCCTCAAGTACTACAAGGGGAGCATAGT</canonical>
            <polymorphic>CTAGCAATTTGTACAAAAACAAGGGGAAAAACAGAGAAATTTATTTTTTTTTTCTTCTGAAAAATTTTTTTCTTGCAAATTTCAGCATTTTCCATGTCTTTTTACGCCTGAAACTACTGAAATCCTATTTTAAAAACGCGTTTTTTCTCTGTAAGAAAACCTCTTTTTCAAAAAACCGCGCAAAAACATCGCAAACGCGCGCCGCCGCACACCAGTTAGATGTGCAGGTTATACGGTAGGCGTCGGTTTTAGGCCTATTTTTCGCGTTTTTTCCATCAATTTTCGGCAATTTTTACCTAAATTTTGAGGAATTTACTCATCTTTTCTGCTTTTTTGGGTTTTTTGAAGTGAAAATTTTGATTATTCAGCACAAATTACATGGAAAATGCATATTTTTGCTCGGTTTTCTAGGAAATTCGTTGAGATTTTTGCTAAAATCCTGTTTTTCAGGTTTTAGGGTTTTTTCGTATATTTGCTGAAATTTCGATTTTTTTTCTTCWAAATACTCACAAAAATACCTCTTTTTGCTCGATTTTCCCTCCTAAAAATCGCATTTTTTCAGAACTAGGGTTTACAAGTCCAGCCATGGTCTTCGTCAAAACACTCAACAGAACCTTGTACCTCGAGGTCGCCGCCAACGAGGATGTCTTGAGCATCAAGCAAAAGATCGAGGCTGCCGAGGGTATCCCATCCGCTGAGCAGAGACTCGTCTTCGCCGGTTCGTTTCGTTTCACGCAGAATCTCGAGAAGCACCCCACCTAGGTTGGGCACTTTGAGGACAGACCCTGCTAGACACATTCTTGATTTTTACCTGTTAAGGACGTCAGCTCGAGGATAGCGACTGCGGACTCGACGCCGAGGCCACCATCTACGTCAACCTTGAGCTTCTCGGAGGAGCCAAGAAGAGAAAGAAGAAGGTCTACACCACTCCAAAGAAGAACAAGAGAAAGCCAAAGAAGGTCAAGCTCGCTGTCCTCAAGTACTACAAGGGGAGCATAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCGTTGAGATTTTTGCTA</pcr_primer_p1>
		<pcr_primer_p2>CTTGATGCTCAAGACATCCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAATTCGTTGAGATTTTTGCTAAAATCCTGTTTTTCAGGTTTTAGGGTTTTTTCGTATATTTGCTGAAATTTCGATTTTTTTTCTTCTAAATACTCACAAAAATACCTCTTTTTGCTCGATTTTCCCTCCTAAAAATCGCATTTTTTCAGAACTAGGGTTTACAAGTCCAGCCATGGTCTTCGTCAAAACACTCAACAGAACCTTGTACCTCGAGGTCGCCGCCAACGAGGATGTCTTGAGCATCAAG</canonical_amplicon>
		<polymorphic_amplicon>AAATTCGTTGAGATTTTTGCTAAAATCCTGTTTTTCAGGTTTTAGGGTTTTTTCGTATATTTGCTGAAATTTCGATTTTTTTTCTTCWAAATACTCACAAAAATACCTCTTTTTGCTCGATTTTCCCTCCTAAAAATCGCATTTTTTCAGAACTAGGGTTTACAAGTCCAGCCATGGTCTTCGTCAAAACACTCAACAGAACCTTGTACCTCGAGGTCGCCGCCAACGAGGATGTCTTGAGCATCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19168</snp_id>
        <super_contig>c011600929.Contig1</super_contig>
        <contig_pos>7150</contig_pos>
        <strand>+</strand>
        <context>TCTTCWAAAT[A/C]CTCACAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAGGGTTTTTTCGTATATTTGCTGAAATTTCGATTTTTTTTCTTCTAAAT</left_flank>
        <right_flank>CTCACAAAAATACCTCTTTTTGCTCGATTTTCCCTCCTAAAAATCGCATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTGTACAAAAACAAGGGGAAAAACAGAGAAATTTATTTTTTTTTTCTTCTGAAAAATTTTTTTCTTGCAAATTTCAGCATTTTCCATGTCTTTTTACGCCTGAAACTACTGAAATCCTATTTTAAAAACGCGTTTTTTCTCTGTAAGAAAACCTCTTTTTCAAAAAACCGCGCAAAAACATCGCAAACGCGCGCCGCCGCACACCAGTTAGATGTGCAGGTTATACGGTAGGCGTCGGTTTTAGGCCTATTTTTCGCGTTTTTTCCATCAATTTTCGGCAATTTTTACCTAAATTTTGAGGAATTTACTCATCTTTTCTGCTTTTTTGGGTTTTTTGAAGTGAAAATTTTGATTATTCAGCACAAATTACATGGAAAATGCATATTTTTGCTCGGTTTTCTAGGAAATTCGTTGAGATTTTTGCTAAAATCCTGTTTTTCAGGTTTTAGGGTTTTTTCGTATATTTGCTGAAATTTCGATTTTTTTTCTTCTAAATACTCACAAAAATACCTCTTTTTGCTCGATTTTCCCTCCTAAAAATCGCATTTTTTCAGAACTAGGGTTTACAAGTCCAGCCATGGTCTTCGTCAAAACACTCAACAGAACCTTGTACCTCGAGGTCGCCGCCAACGAGGATGTCTTGAGCATCAAGCAAAAGATCGAGGCTGCCGAGGGTATCCCATCCGCTGAGCAGAGACTCGTCTTCGCCGGTTCGTTTCGTTTCACGCAGAATCTCGAGAAGCACCCCACCTAGGTTGGGCACTTTGAGGACAGACCCTGCTAGACACATTCTTGATTTTTACCTGTTAAGGACGTCAGCTCGAGGATAGCGACTGCGGACTCGACGCCGAGGCCACCATCTACGTCAACCTTGAGCTTCTCGGAGGAGCCAAGAAGAGAAAGAAGAAGGTCTACACCACTCCAAAGAAGAACAAGAGAAAGCCAAAGAAGGTCAAGCTCGCTGTCCTCAAGTACTACAAGGGGAGCATAGTACCTG</canonical>
            <polymorphic>AATTTGTACAAAAACAAGGGGAAAAACAGAGAAATTTATTTTTTTTTTCTTCTGAAAAATTTTTTTCTTGCAAATTTCAGCATTTTCCATGTCTTTTTACGCCTGAAACTACTGAAATCCTATTTTAAAAACGCGTTTTTTCTCTGTAAGAAAACCTCTTTTTCAAAAAACCGCGCAAAAACATCGCAAACGCGCGCCGCCGCACACCAGTTAGATGTGCAGGTTATACGGTAGGCGTCGGTTTTAGGCCTATTTTTCGCGTTTTTTCCATCAATTTTCGGCAATTTTTACCTAAATTTTGAGGAATTTACTCATCTTTTCTGCTTTTTTGGGTTTTTTGAAGTGAAAATTTTGATTATTCAGCACAAATTACATGGAAAATGCATATTTTTGCTCGGTTTTCTAGGAAATTCGTTGAGATTTTTGCTAAAATCCTGTTTTTCAGGTTTTAGGGTTTTTTCGTATATTTGCTGAAATTTCGATTTTTTTTCTTCTAAATMCTCACAAAAATACCTCTTTTTGCTCGATTTTCCCTCCTAAAAATCGCATTTTTTCAGAACTAGGGTTTACAAGTCCAGCCATGGTCTTCGTCAAAACACTCAACAGAACCTTGTACCTCGAGGTCGCCGCCAACGAGGATGTCTTGAGCATCAAGCAAAAGATCGAGGCTGCCGAGGGTATCCCATCCGCTGAGCAGAGACTCGTCTTCGCCGGTTCGTTTCGTTTCACGCAGAATCTCGAGAAGCACCCCACCTAGGTTGGGCACTTTGAGGACAGACCCTGCTAGACACATTCTTGATTTTTACCTGTTAAGGACGTCAGCTCGAGGATAGCGACTGCGGACTCGACGCCGAGGCCACCATCTACGTCAACCTTGAGCTTCTCGGAGGAGCCAAGAAGAGAAAGAAGAAGGTCTACACCACTCCAAAGAAGAACAAGAGAAAGCCAAAGAAGGTCAAGCTCGCTGTCCTCAAGTACTACAAGGGGAGCATAGTACCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCGTTGAGATTTTTGCTA</pcr_primer_p1>
		<pcr_primer_p2>CTTGATGCTCAAGACATCCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAATTCGTTGAGATTTTTGCTAAAATCCTGTTTTTCAGGTTTTAGGGTTTTTTCGTATATTTGCTGAAATTTCGATTTTTTTTCTTCTAAATACTCACAAAAATACCTCTTTTTGCTCGATTTTCCCTCCTAAAAATCGCATTTTTTCAGAACTAGGGTTTACAAGTCCAGCCATGGTCTTCGTCAAAACACTCAACAGAACCTTGTACCTCGAGGTCGCCGCCAACGAGGATGTCTTGAGCATCAAG</canonical_amplicon>
		<polymorphic_amplicon>AAATTCGTTGAGATTTTTGCTAAAATCCTGTTTTTCAGGTTTTAGGGTTTTTTCGTATATTTGCTGAAATTTCGATTTTTTTTCTTCTAAATMCTCACAAAAATACCTCTTTTTGCTCGATTTTCCCTCCTAAAAATCGCATTTTTTCAGAACTAGGGTTTACAAGTCCAGCCATGGTCTTCGTCAAAACACTCAACAGAACCTTGTACCTCGAGGTCGCCGCCAACGAGGATGTCTTGAGCATCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19169</snp_id>
        <super_contig>c011600929.Contig1</super_contig>
        <contig_pos>9214</contig_pos>
        <strand>+</strand>
        <context>TGACTCAGAA[A/G]TTCGATTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAA</left_flank>
        <right_flank>TTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCCTAATTTCCTATCTTCCAGGAGTGGATTTGGCGCCAATCAAGCCCATCAAGAACTGTATCGCTCTTCAAGGAGACATCACCACCAATGAGACGCGTGCCGCCATCAAGAAGGAGTTGAAGACGTGGAGTGTGAGTTTGTGTGTTCTGAAAATGATTTTGAACGGAAAATAGCTAACAATTTACATAAATTTTGTCGAAAACCCCTTGAAAATGACTCATTTTGAATTGGAAATGGCTAGAAAACGACCTAAAATCGGCTCAAATCGCCAGCTGTTGATCCAAGCAGAAATAGTCCCAAAATCAACTAAAATGGCTCAAATTATCCCAAATTTTGCCGGAAAACGACTGAAAATTCGATGAAAATTGACTAAAAGTGCTTTTTTTTTCGTTGAAAAACGCTAAAAAA</canonical>
            <polymorphic>GAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAARTTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCCTAATTTCCTATCTTCCAGGAGTGGATTTGGCGCCAATCAAGCCCATCAAGAACTGTATCGCTCTTCAAGGAGACATCACCACCAATGAGACGCGTGCCGCCATCAAGAAGGAGTTGAAGACGTGGAGTGTGAGTTTGTGTGTTCTGAAAATGATTTTGAACGGAAAATAGCTAACAATTTACATAAATTTTGTCGAAAACCCCTTGAAAATGACTCATTTTGAATTGGAAATGGCTAGAAAACGACCTAAAATCGGCTCAAATCGCCAGCTGTTGATCCAAGCAGAAATAGTCCCAAAATCAACTAAAATGGCTCAAATTATCCCAAATTTTGCCGGAAAACGACTGAAAATTCGATGAAAATTGACTAAAAGTGCTTTTTTTTTCGTTGAAAAACGCTAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>282 203 141 102 91 88 56 23 14</canonical_bands>
                <polymorphic_bands>373 203 141 102 88 56 23 14</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>174 145 98 94 91 73 68 58 45 37 29 23 20 14 11 10 10</canonical_bands>
                <polymorphic_bands>189 174 145 94 73 68 58 45 37 29 23 20 14 11 10 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCTGGAATGATTTTTAAT</pcr_primer_p1>
		<pcr_primer_p2>ACTCCTGGAAGATAGGAAATTAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCCTAATTTCCTATCTTCCAGGAGT</canonical_amplicon>
		<polymorphic_amplicon>TTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAARTTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCCTAATTTCCTATCTTCCAGGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19170</snp_id>
        <super_contig>c011600929.Contig1</super_contig>
        <contig_pos>9153</contig_pos>
        <strand>+</strand>
        <context>AATCGGTTAA[A/G]ATTGGTCTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAA</left_flank>
        <right_flank>ATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCCTAATTTCCTATCTTCCAGGAGTGGATTTGGCGCCAATCAAGCCCATCAAGAACTGTATCGCTCTTCAAGGAGACATCACCACCAATGAGACGCGTGCCGCCATCAAGAAGGAGTTGAAGACGTGGAGTGTGAGTTTGTGTGTTCTGAAAATGATTTTGAACGGAAAATAGCTAACAATTTACATAAATTTTGTCGAAAACCCCTTGAAAATGACTCATTTTGAATTGGAAATGGCTAGAAAACGACCTAAAATCGGCTCAAATCGCCAGCTGTTGATCCAAGCAGAAATAGTCCCAAAATCAACTAAAATGGCTCAAATTATCCCAAATTTTGCCGGAAAACGA</canonical>
            <polymorphic>AACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAARATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCCTAATTTCCTATCTTCCAGGAGTGGATTTGGCGCCAATCAAGCCCATCAAGAACTGTATCGCTCTTCAAGGAGACATCACCACCAATGAGACGCGTGCCGCCATCAAGAAGGAGTTGAAGACGTGGAGTGTGAGTTTGTGTGTTCTGAAAATGATTTTGAACGGAAAATAGCTAACAATTTACATAAATTTTGTCGAAAACCCCTTGAAAATGACTCATTTTGAATTGGAAATGGCTAGAAAACGACCTAAAATCGGCTCAAATCGCCAGCTGTTGATCCAAGCAGAAATAGTCCCAAAATCAACTAAAATGGCTCAAATTATCCCAAATTTTGCCGGAAAACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCTGGAATGATTTTTAAT</pcr_primer_p1>
		<pcr_primer_p2>ACTCCTGGAAGATAGGAAATTAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCCTAATTTCCTATCTTCCAGGAGT</canonical_amplicon>
		<polymorphic_amplicon>TTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAARATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCCTAATTTCCTATCTTCCAGGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19171</snp_id>
        <super_contig>c011600929.Contig1</super_contig>
        <contig_pos>9132</contig_pos>
        <strand>+</strand>
        <context>AATTCGGTTT[C/T]AGATCTTAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTT</left_flank>
        <right_flank>AGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCCTAATTTCCTATCTTCCAGGAGTGGATTTGGCGCCAATCAAGCCCATCAAGAACTGTATCGCTCTTCAAGGAGACATCACCACCAATGAGACGCGTGCCGCCATCAAGAAGGAGTTGAAGACGTGGAGTGTGAGTTTGTGTGTTCTGAAAATGATTTTGAACGGAAAATAGCTAACAATTTACATAAATTTTGTCGAAAACCCCTTGAAAATGACTCATTTTGAATTGGAAATGGCTAGAAAACGACCTAAAATCGGCTCAAATCGCCAGCTGTTGATCCAAGCAGAAATAGTCCCAAAATCAACTAAAATGGCTCAAATTATC</canonical>
            <polymorphic>GCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTYAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCCTAATTTCCTATCTTCCAGGAGTGGATTTGGCGCCAATCAAGCCCATCAAGAACTGTATCGCTCTTCAAGGAGACATCACCACCAATGAGACGCGTGCCGCCATCAAGAAGGAGTTGAAGACGTGGAGTGTGAGTTTGTGTGTTCTGAAAATGATTTTGAACGGAAAATAGCTAACAATTTACATAAATTTTGTCGAAAACCCCTTGAAAATGACTCATTTTGAATTGGAAATGGCTAGAAAACGACCTAAAATCGGCTCAAATCGCCAGCTGTTGATCCAAGCAGAAATAGTCCCAAAATCAACTAAAATGGCTCAAATTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAAAAATTGGTTAAAATCGT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTAGAGTCTGGGGATCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTYAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19172</snp_id>
        <super_contig>c011600929.Contig1</super_contig>
        <contig_pos>9055</contig_pos>
        <strand>+</strand>
        <context>AAGCGATTTT[C/G]AGCTCAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTT</left_flank>
        <right_flank>AGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGAAGCTGGTAAGTCGATTTTCCGGCTTAAAGTCCTTAAAAAATCGATTTTCTTCCAGGATACCGATCACGTGCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCCTAATTTCCTATCTTCCAGGAGTGGATTTGGCGCCAATCAAGCCCATCAAGAACTGTATCGCTCTTCAAGGAGACATCACCACCAATGAGACGCGTGCCGCCATCAAGAAGGAGTTGAAGACGTGGAGTGTGAGTTTGTGTGTTCTGAAAATGATTTTGAACGGAAAATAGCTAACAATTTACATAAATTTTGTCGAAAACCCCTTGAAAATGACTCATTTTGAATTGGAAATGGCTAGAAAACGAC</canonical>
            <polymorphic>AAAGAAGCTGGTAAGTCGATTTTCCGGCTTAAAGTCCTTAAAAAATCGATTTTCTTCCAGGATACCGATCACGTGCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTSAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCCTAATTTCCTATCTTCCAGGAGTGGATTTGGCGCCAATCAAGCCCATCAAGAACTGTATCGCTCTTCAAGGAGACATCACCACCAATGAGACGCGTGCCGCCATCAAGAAGGAGTTGAAGACGTGGAGTGTGAGTTTGTGTGTTCTGAAAATGATTTTGAACGGAAAATAGCTAACAATTTACATAAATTTTGTCGAAAACCCCTTGAAAATGACTCATTTTGAATTGGAAATGGCTAGAAAACGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGGTCAAAAATCGACTG</pcr_primer_p1>
		<pcr_primer_p2>TTCTGAGTCATTTTATCGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAA</canonical_amplicon>
		<polymorphic_amplicon>AAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTSAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19173</snp_id>
        <super_contig>c011600929.Contig1</super_contig>
        <contig_pos>8991</contig_pos>
        <strand>+</strand>
        <context>CTGGAATGGT[C/T]CGTTTTTGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGT</left_flank>
        <right_flank>CGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAATCATGGGAAAGAAGGTTAAAATCGGAAAACAGCGTCGTGATAAGTATTACAAGCTCGCCAAAGAAGCTGGTAAGTCGATTTTCCGGCTTAAAGTCCTTAAAAAATCGATTTTCTTCCAGGATACCGATCACGTGCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCCTAATTTCCTATCTTCCAGGAGTGGATTTGGCGCCAATCAAGCCCATCAAGAACTGTATCGCTCTTCAAGGAGACATCACCACCAATGAGACGCGTGCCGCCATCAAGAAGGAGTTGAAGACGTGGAGTGTGAGTTTGTGTGTTCTGAAAATGATTTTGAACGGAAAATAGCTAACAATTTAC</canonical>
            <polymorphic>ACAAATCATGGGAAAGAAGGTTAAAATCGGAAAACAGCGTCGTGATAAGTATTACAAGCTCGCCAAAGAAGCTGGTAAGTCGATTTTCCGGCTTAAAGTCCTTAAAAAATCGATTTTCTTCCAGGATACCGATCACGTGCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTYCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCCTAATTTCCTATCTTCCAGGAGTGGATTTGGCGCCAATCAAGCCCATCAAGAACTGTATCGCTCTTCAAGGAGACATCACCACCAATGAGACGCGTGCCGCCATCAAGAAGGAGTTGAAGACGTGGAGTGTGAGTTTGTGTGTTCTGAAAATGATTTTGAACGGAAAATAGCTAACAATTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAAAAGTCGGTTCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CGATCAGTAGCACTTCAGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCG</canonical_amplicon>
		<polymorphic_amplicon>CTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTYCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19174</snp_id>
        <super_contig>c011600929.Contig1</super_contig>
        <contig_pos>8936</contig_pos>
        <strand>+</strand>
        <context>TCGGTTTAAA[A/G]CCTGAAAAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAA</left_flank>
        <right_flank>CCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTGTTTCAACCCAAAAACCTCTGATTTAAACGAATTTCAGGGTAAAAAATATAACAAATCATGGGAAAGAAGGTTAAAATCGGAAAACAGCGTCGTGATAAGTATTACAAGCTCGCCAAAGAAGCTGGTAAGTCGATTTTCCGGCTTAAAGTCCTTAAAAAATCGATTTTCTTCCAGGATACCGATCACGTGCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCCTAATTTCCTATCTTCCAGGAGTGGATTTGGCGCCAATCAAGCCCATCAAGAACTGTATCGCTCTTCAAGGAGACATCACCACCAATGAGACGCGTGCCGCCATCAAGAAGGAGTTGAAGACGTGGAG</canonical>
            <polymorphic>AGCTGTTTCAACCCAAAAACCTCTGATTTAAACGAATTTCAGGGTAAAAAATATAACAAATCATGGGAAAGAAGGTTAAAATCGGAAAACAGCGTCGTGATAAGTATTACAAGCTCGCCAAAGAAGCTGGTAAGTCGATTTTCCGGCTTAAAGTCCTTAAAAAATCGATTTTCTTCCAGGATACCGATCACGTGCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAARCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCCTAATTTCCTATCTTCCAGGAGTGGATTTGGCGCCAATCAAGCCCATCAAGAACTGTATCGCTCTTCAAGGAGACATCACCACCAATGAGACGCGTGCCGCCATCAAGAAGGAGTTGAAGACGTGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>228 169 111 105 98 86 71 49 23 21 20 13 4 2</canonical_bands>
                <polymorphic_bands>251 169 111 105 98 86 71 49 21 20 13 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCCAGTTTGATCGTTGGTA</pcr_primer_p1>
		<pcr_primer_p2>CATTCCAGTCGATTTTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATG</canonical_amplicon>
		<polymorphic_amplicon>CTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAARCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19175</snp_id>
        <super_contig>c011600929.Contig1</super_contig>
        <contig_pos>8914</contig_pos>
        <strand></strand>
        <context>GTGAAAAAAA[A/G]CCCGAATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAA</left_flank>
        <right_flank>CCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTCCATTTTCGCCTATTTCTAGCTGTTTCAACCCAAAAACCTCTGATTTAAACGAATTTCAGGGTAAAAAATATAACAAATCATGGGAAAGAAGGTTAAAATCGGAAAACAGCGTCGTGATAAGTATTACAAGCTCGCCAAAGAAGCTGGTAAGTCGATTTTCCGGCTTAAAGTCCTTAAAAAATCGATTTTCTTCCAGGATACCGATCACGTGCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCCTAATTTCCTATCTTCCAGGAGTGGATTTGGCGCCAATCAAGCCCATCAAGAACTGTATCGCTCTTCAAGGAGACATCACCACCAATGAGACGCGTGCCGCCATCA</canonical>
            <polymorphic>ACCTCCATTTTCGCCTATTTCTAGCTGTTTCAACCCAAAAACCTCTGATTTAAACGAATTTCAGGGTAAAAAATATAACAAATCATGGGAAAGAAGGTTAAAATCGGAAAACAGCGTCGTGATAAGTATTACAAGCTCGCCAAAGAAGCTGGTAAGTCGATTTTCCGGCTTAAAGTCCTTAAAAAATCGATTTTCTTCCAGGATACCGATCACGTGCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAARCCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCCTAATTTCCTATCTTCCAGGAGTGGATTTGGCGCCAATCAAGCCCATCAAGAACTGTATCGCTCTTCAAGGAGACATCACCACCAATGAGACGCGTGCCGCCATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCAGTTTGATCGTTGGTA</pcr_primer_p1>
		<pcr_primer_p2>AGTCGATTTTTGACCATTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>CTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACT</canonical_amplicon>
		<polymorphic_amplicon>CTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAARCCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19176</snp_id>
        <super_contig>c011600929.Contig1</super_contig>
        <contig_pos>8872</contig_pos>
        <strand></strand>
        <context>AAWWAGTCTA[T/A]WTCGATAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTA</left_flank>
        <right_flank>ATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGCCTTTATTCCTCGTTTTTCGTCTTTTTTTCTCCCAAAAACCTCCATTTTCGCCTATTTCTAGCTGTTTCAACCCAAAAACCTCTGATTTAAACGAATTTCAGGGTAAAAAATATAACAAATCATGGGAAAGAAGGTTAAAATCGGAAAACAGCGTCGTGATAAGTATTACAAGCTCGCCAAAGAAGCTGGTAAGTCGATTTTCCGGCTTAAAGTCCTTAAAAAATCGATTTTCTTCCAGGATACCGATCACGTGCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCCTAATTTCCTATCTTCCAGGAGTGGATTTGGCGCCAATCAAGCCCATCAAGAACTGTATCGCTC</canonical>
            <polymorphic>TTCGCCTTTATTCCTCGTTTTTCGTCTTTTTTTCTCCCAAAAACCTCCATTTTCGCCTATTTCTAGCTGTTTCAACCCAAAAACCTCTGATTTAAACGAATTTCAGGGTAAAAAATATAACAAATCATGGGAAAGAAGGTTAAAATCGGAAAACAGCGTCGTGATAAGTATTACAAGCTCGCCAAAGAAGCTGGTAAGTCGATTTTCCGGCTTAAAGTCCTTAAAAAATCGATTTTCTTCCAGGATACCGATCACGTGCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTAWATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCCTAATTTCCTATCTTCCAGGAGTGGATTTGGCGCCAATCAAGCCCATCAAGAACTGTATCGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCAGTTTGATCGTTGGTA</pcr_primer_p1>
		<pcr_primer_p2>AGTCGATTTTTGACCATTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>CTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACT</canonical_amplicon>
		<polymorphic_amplicon>CTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTAWATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19177</snp_id>
        <super_contig>c011600929.Contig1</super_contig>
        <contig_pos>8864</contig_pos>
        <strand></strand>
        <context>TGARCCTAAA[A/T]WAGTCTAWWT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAA</left_flank>
        <right_flank>CAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACATATTTTCGCCTTTATTCCTCGTTTTTCGTCTTTTTTTCTCCCAAAAACCTCCATTTTCGCCTATTTCTAGCTGTTTCAACCCAAAAACCTCTGATTTAAACGAATTTCAGGGTAAAAAATATAACAAATCATGGGAAAGAAGGTTAAAATCGGAAAACAGCGTCGTGATAAGTATTACAAGCTCGCCAAAGAAGCTGGTAAGTCGATTTTCCGGCTTAAAGTCCTTAAAAAATCGATTTTCTTCCAGGATACCGATCACGTGCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCCTAATTTCCTATCTTCCAGGAGTGGATTTGGCGCCAATCAAGCCCATCAAGAACTG</canonical>
            <polymorphic>AACATATTTTCGCCTTTATTCCTCGTTTTTCGTCTTTTTTTCTCCCAAAAACCTCCATTTTCGCCTATTTCTAGCTGTTTCAACCCAAAAACCTCTGATTTAAACGAATTTCAGGGTAAAAAATATAACAAATCATGGGAAAGAAGGTTAAAATCGGAAAACAGCGTCGTGATAAGTATTACAAGCTCGCCAAAGAAGCTGGTAAGTCGATTTTCCGGCTTAAAGTCCTTAAAAAATCGATTTTCTTCCAGGATACCGATCACGTGCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAWCAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCCTAATTTCCTATCTTCCAGGAGTGGATTTGGCGCCAATCAAGCCCATCAAGAACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>498 328 174</canonical_bands>
                <polymorphic_bands>672 328</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCCAGTTTGATCGTTGGTA</pcr_primer_p1>
		<pcr_primer_p2>AGTCGATTTTTGACCATTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>CTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACT</canonical_amplicon>
		<polymorphic_amplicon>CTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAWCAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19179</snp_id>
        <super_contig>c011600929.Contig1</super_contig>
        <contig_pos>8835</contig_pos>
        <strand>+</strand>
        <context>CCTGAAAATT[G/T]TCTGGAACGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATT</left_flank>
        <right_flank>TCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCAGCAGCAAGTGCGCTCCACCGGACAAAACATATTTTCGCCTTTATTCCTCGTTTTTCGTCTTTTTTTCTCCCAAAAACCTCCATTTTCGCCTATTTCTAGCTGTTTCAACCCAAAAACCTCTGATTTAAACGAATTTCAGGGTAAAAAATATAACAAATCATGGGAAAGAAGGTTAAAATCGGAAAACAGCGTCGTGATAAGTATTACAAGCTCGCCAAAGAAGCTGGTAAGTCGATTTTCCGGCTTAAAGTCCTTAAAAAATCGATTTTCTTCCAGGATACCGATCACGTGCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCCTAATTTCCTATCTTCCAGGAGTGGAT</canonical>
            <polymorphic>TGCAGCAGCAAGTGCGCTCCACCGGACAAAACATATTTTCGCCTTTATTCCTCGTTTTTCGTCTTTTTTTCTCCCAAAAACCTCCATTTTCGCCTATTTCTAGCTGTTTCAACCCAAAAACCTCTGATTTAAACGAATTTCAGGGTAAAAAATATAACAAATCATGGGAAAGAAGGTTAAAATCGGAAAACAGCGTCGTGATAAGTATTACAAGCTCGCCAAAGAAGCTGGTAAGTCGATTTTCCGGCTTAAAGTCCTTAAAAAATCGATTTTCTTCCAGGATACCGATCACGTGCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTKTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCCTAATTTCCTATCTTCCAGGAGTGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>346 203 135 123 91 88 14</canonical_bands>
                <polymorphic_bands>346 203 135 123 102 91</polymorphic_bands>
            </assay>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>497 289 214</canonical_bands>
                <polymorphic_bands>786 214</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCCAGTTTGATCGTTGGTA</pcr_primer_p1>
		<pcr_primer_p2>AGTCGATTTTTGACCATTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>CTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACT</canonical_amplicon>
		<polymorphic_amplicon>CTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTKTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19180</snp_id>
        <super_contig>c011600929.Contig1</super_contig>
        <contig_pos>8809</contig_pos>
        <strand>+</strand>
        <context>ATCCGCTGAA[A/G]AATGGGAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAA</left_flank>
        <right_flank>AATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCCGATGAAAATTGGCCTAAACTTTTGCAGCAGCAAGTGCGCTCCACCGGACAAAACATATTTTCGCCTTTATTCCTCGTTTTTCGTCTTTTTTTCTCCCAAAAACCTCCATTTTCGCCTATTTCTAGCTGTTTCAACCCAAAAACCTCTGATTTAAACGAATTTCAGGGTAAAAAATATAACAAATCATGGGAAAGAAGGTTAAAATCGGAAAACAGCGTCGTGATAAGTATTACAAGCTCGCCAAAGAAGCTGGTAAGTCGATTTTCCGGCTTAAAGTCCTTAAAAAATCGATTTTCTTCCAGGATACCGATCACGTGCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCC</canonical>
            <polymorphic>TGCCGATGAAAATTGGCCTAAACTTTTGCAGCAGCAAGTGCGCTCCACCGGACAAAACATATTTTCGCCTTTATTCCTCGTTTTTCGTCTTTTTTTCTCCCAAAAACCTCCATTTTCGCCTATTTCTAGCTGTTTCAACCCAAAAACCTCTGATTTAAACGAATTTCAGGGTAAAAAATATAACAAATCATGGGAAAGAAGGTTAAAATCGGAAAACAGCGTCGTGATAAGTATTACAAGCTCGCCAAAGAAGCTGGTAAGTCGATTTTCCGGCTTAAAGTCCTTAAAAAATCGATTTTCTTCCAGGATACCGATCACGTGCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAARAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCAGTTTGATCGTTGGTA</pcr_primer_p1>
		<pcr_primer_p2>AGTCGATTTTTGACCATTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>CTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACT</canonical_amplicon>
		<polymorphic_amplicon>CTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAARAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19181</snp_id>
        <super_contig>c011600929.Contig1</super_contig>
        <contig_pos>8784</contig_pos>
        <strand>+</strand>
        <context>CGGAAAATGC[A/C]AAAAATTGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGC</left_flank>
        <right_flank>AAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTGTCGTCCTCAACTTGGCACTATGCCGATGAAAATTGGCCTAAACTTTTGCAGCAGCAAGTGCGCTCCACCGGACAAAACATATTTTCGCCTTTATTCCTCGTTTTTCGTCTTTTTTTCTCCCAAAAACCTCCATTTTCGCCTATTTCTAGCTGTTTCAACCCAAAAACCTCTGATTTAAACGAATTTCAGGGTAAAAAATATAACAAATCATGGGAAAGAAGGTTAAAATCGGAAAACAGCGTCGTGATAAGTATTACAAGCTCGCCAAAGAAGCTGGTAAGTCGATTTTCCGGCTTAAAGTCCTTAAAAAATCGATTTTCTTCCAGGATACCGATCACGTGCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATT</canonical>
            <polymorphic>CAGTGTCGTCCTCAACTTGGCACTATGCCGATGAAAATTGGCCTAAACTTTTGCAGCAGCAAGTGCGCTCCACCGGACAAAACATATTTTCGCCTTTATTCCTCGTTTTTCGTCTTTTTTTCTCCCAAAAACCTCCATTTTCGCCTATTTCTAGCTGTTTCAACCCAAAAACCTCTGATTTAAACGAATTTCAGGGTAAAAAATATAACAAATCATGGGAAAGAAGGTTAAAATCGGAAAACAGCGTCGTGATAAGTATTACAAGCTCGCCAAAGAAGCTGGTAAGTCGATTTTCCGGCTTAAAGTCCTTAAAAAATCGATTTTCTTCCAGGATACCGATCACGTGCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCMAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>502 388 57 53</canonical_bands>
                <polymorphic_bands>559 388 53</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCGATTTTCTTCCAGGATAC</pcr_primer_p1>
		<pcr_primer_p2>GTTTTGAACCGACTTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>358</pcr_amplicon_size>
		<canonical_amplicon>ATCGATTTTCTTCCAGGATACCGATCACGTGCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAAC</canonical_amplicon>
		<polymorphic_amplicon>ATCGATTTTCTTCCAGGATACCGATCACGTGCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCMAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19183</snp_id>
        <super_contig>c011600929.Contig1</super_contig>
        <contig_pos>40613</contig_pos>
        <strand>+</strand>
        <context>GGGCGAATTT[C/T]GCAACAAATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCGGCTGTCATCCCCATGGAATTATCGCAATGGCTGCATGGGCGAATTT</left_flank>
        <right_flank>GCAACAAATGGAACTGGAATCTATGAAAAGTTCCCATCGATTCGATGGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGGTCAAAATTCGAAATTGAGGAAAACTAGTCGTGTTTGGGCTTGTTTCAAAGCTCTTGGCGCAATAAATTCAAATTTTAAAGGCTAAAGCCTGTCAGAACAATACTGATTGAGCTACGGTAGAATTAGAATTCAAGAAGTTTTGAAATTTGTTTAGCTCTTCACCTTCCAATGGCACATTCTGGCGATCTACGCGTGTTGGTACCTCTACGACATCAATTCTCCGAAACGAGGTGGATATGCAAGTGAATGGGTTCGAAAGTAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAAGTTTTCAAAATTTTCAAATTTTCCAAATTGTTCCAGATGGCGTGTCAACGACTGGTTCGCCCAGTACTTCCCCATTAAACTTCATAAAACTGCCGAATTATCACCGGACCATAACTATCTGATCGGCTGTCATCCCCATGGAATTATCGCAATGGCTGCATGGGCGAATTTCGCAACAAATGGAACTGGAATCTATGAAAAGTTCCCATCGATTCGATGGAATTTATGCACACTGGCGTTAAATTTCAAGGTGATCAATGTTTTTAGTATAAAAAGAGCTTCAAACTGAGTATAAACACGACTAGAATCCTTTAACCTTGAGGATTGAGGCCAGAGACGCAGTGTGTCTCGTTTCTCTGCACTCTAGCTTCTCAAAAGCTACCGTAACCTTCTTAGTTTTTGCACAGACTCTATGAAAATAAAGGCATTCGATTTGTCTTGTTGAGTGCTTCAAAATGAGTATAAACACGACTAGGCTCCGCTCATTTTGGTTTTTCGACTTTAAAGGCGCATAGGGGTGCAGAAATTCTGAAAATTTCAAAGTTCACCAAACCTAGTCATGTTTAGGCTCATTTTGAAACTGAAATCTTGAAAATCTCGAAAATATTAAATTCAATCCAAAAAATTCGAAAATTCGAAAGATCCCGGATGACTACAAATCCCGGATGTGTT</canonical>
            <polymorphic>TCTGGTCAAAATTCGAAATTGAGGAAAACTAGTCGTGTTTGGGCTTGTTTCAAAGCTCTTGGCGCAATAAATTCAAATTTTAAAGGCTAAAGCCTGTCAGAACAATACTGATTGAGCTACGGTAGAATTAGAATTCAAGAAGTTTTGAAATTTGTTTAGCTCTTCACCTTCCAATGGCACATTCTGGCGATCTACGCGTGTTGGTACCTCTACGACATCAATTCTCCGAAACGAGGTGGATATGCAAGTGAATGGGTTCGAAAGTAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAAGTTTTCAAAATTTTCAAATTTTCCAAATTGTTCCAGATGGCGTGTCAACGACTGGTTCGCCCAGTACTTCCCCATTAAACTTCATAAAACTGCCGAATTATCACCGGACCATAACTATCTGATCGGCTGTCATCCCCATGGAATTATCGCAATGGCTGCATGGGCGAATTTYGCAACAAATGGAACTGGAATCTATGAAAAGTTCCCATCGATTCGATGGAATTTATGCACACTGGCGTTAAATTTCAAGGTGATCAATGTTTTTAGTATAAAAAGAGCTTCAAACTGAGTATAAACACGACTAGAATCCTTTAACCTTGAGGATTGAGGCCAGAGACGCAGTGTGTCTCGTTTCTCTGCACTCTAGCTTCTCAAAAGCTACCGTAACCTTCTTAGTTTTTGCACAGACTCTATGAAAATAAAGGCATTCGATTTGTCTTGTTGAGTGCTTCAAAATGAGTATAAACACGACTAGGCTCCGCTCATTTTGGTTTTTCGACTTTAAAGGCGCATAGGGGTGCAGAAATTCTGAAAATTTCAAAGTTCACCAAACCTAGTCATGTTTAGGCTCATTTTGAAACTGAAATCTTGAAAATCTCGAAAATATTAAATTCAATCCAAAAAATTCGAAAATTCGAAAGATCCCGGATGACTACAAATCCCGGATGTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTTCCCCATTAAACTTCATAA</pcr_primer_p1>
		<pcr_primer_p2>ACTAAAAACATTGATCACCTTGA</pcr_primer_p2>
		<pcr_amplicon_size>204</pcr_amplicon_size>
		<canonical_amplicon>TACTTCCCCATTAAACTTCATAAAACTGCCGAATTATCACCGGACCATAACTATCTGATCGGCTGTCATCCCCATGGAATTATCGCAATGGCTGCATGGGCGAATTTCGCAACAAATGGAACTGGAATCTATGAAAAGTTCCCATCGATTCGATGGAATTTATGCACACTGGCGTTAAATTTCAAGGTGATCAATGTTTTTAGT</canonical_amplicon>
		<polymorphic_amplicon>TACTTCCCCATTAAACTTCATAAAACTGCCGAATTATCACCGGACCATAACTATCTGATCGGCTGTCATCCCCATGGAATTATCGCAATGGCTGCATGGGCGAATTTYGCAACAAATGGAACTGGAATCTATGAAAAGTTCCCATCGATTCGATGGAATTTATGCACACTGGCGTTAAATTTCAAGGTGATCAATGTTTTTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19184</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>20821</contig_pos>
        <strand>+</strand>
        <context>TAAGAAGCAA[A/T]CGGCTGTCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCAATACGGAGTCAAAAATGGAGAGGGAGGACGAAAGAATAAGAAGCAA</left_flank>
        <right_flank>CGGCTGTCTCAGAGGCCAAGAAACTGGACCGAGAGCTCAACGAGATCAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGAAAATGGACATCTGGAAGTTGAACCCGCGATGCACGACTGATAGACAAGCGCGCTCACCTCTACACCACACAGGGCTTGTCGGCTTCTGCCGCTAAAACGATTATGAAACGAGGATTGGGTGCCGCTTGGAAGAACGGTCGCGTTTTCGCTTGTACAATAACAGGGAGTTATTGTTTTGGTGTCCCTTGTTATTTTCTGACTGTACGGTGTCATATATCAAAAAACTAGACTTTTGAAAATTTTCATGTCTGGCCTCCTTTAAATTATCCATAAATAGCTCGAATTACCGTAAAACCTGTATTAGAAGGGCCCTCCAGAGGTATTCTGAAAAAAAATAGAAGGGCCCCTCTAATACAGGTTTTACGGTAGTTTTAAAGCTAGAAATAGCTCAAATTAACTCTAAATTCGTTGCAGGAAGGTCGTGAAGCACTCCCAAAGGCCGCCTATCAATACGGAGTCAAAAATGGAGAGGGAGGACGAAAGAATAAGAAGCAAACGGCTGTCTCAGAGGCCAAGAAACTGGACCGAGAGCTCAACGAGATCAATAAGATTATGGATAAGAGAAAGGCCGGAGAAGGAGGCGGTGGAGAGTATAAGAAGCCTAAATATTGATCTTTTCTGTTTAAAGTATTTTTAAGTTATAAAATTATTAATCAATTTAATATCAAATCAGAGAAAAAAGTGGGACAGAAGAAGCAGCGGGGGGAAAAGATCGGGAATTCAAATATTATGATTAAGAGAAAAAATGATAAAACTAAAAGAAAAGGGAAAATGTACAGATTTTCGGACACACAGAGAAATATACATTCAAATCAAACTGGAACTAGAATTAATCGGAATCCGTCGTCAACTCCACAAAGTCAGTCGAATCAAAGTCTTCTGAATAGTCAGAAGACGTCACGGAGGAAGGTCCGGGGGCCGAGCCATCGGCGTTTCGGTATTCTGAAGTCTCTGACGACGTGACGATGGTGGACGGCTTCTTGCATAGCTCTTCAC</canonical>
            <polymorphic>ACGAAAATGGACATCTGGAAGTTGAACCCGCGATGCACGACTGATAGACAAGCGCGCTCACCTCTACACCACACAGGGCTTGTCGGCTTCTGCCGCTAAAACGATTATGAAACGAGGATTGGGTGCCGCTTGGAAGAACGGTCGCGTTTTCGCTTGTACAATAACAGGGAGTTATTGTTTTGGTGTCCCTTGTTATTTTCTGACTGTACGGTGTCATATATCAAAAAACTAGACTTTTGAAAATTTTCATGTCTGGCCTCCTTTAAATTATCCATAAATAGCTCGAATTACCGTAAAACCTGTATTAGAAGGGCCCTCCAGAGGTATTCTGAAAAAAAATAGAAGGGCCCCTCTAATACAGGTTTTACGGTAGTTTTAAAGCTAGAAATAGCTCAAATTAACTCTAAATTCGTTGCAGGAAGGTCGTGAAGCACTCCCAAAGGCCGCCTATCAATACGGAGTCAAAAATGGAGAGGGAGGACGAAAGAATAAGAAGCAAWCGGCTGTCTCAGAGGCCAAGAAACTGGACCGAGAGCTCAACGAGATCAATAAGATTATGGATAAGAGAAAGGCCGGAGAAGGAGGCGGTGGAGAGTATAAGAAGCCTAAATATTGATCTTTTCTGTTTAAAGTATTTTTAAGTTATAAAATTATTAATCAATTTAATATCAAATCAGAGAAAAAAGTGGGACAGAAGAAGCAGCGGGGGGAAAAGATCGGGAATTCAAATATTATGATTAAGAGAAAAAATGATAAAACTAAAAGAAAAGGGAAAATGTACAGATTTTCGGACACACAGAGAAATATACATTCAAATCAAACTGGAACTAGAATTAATCGGAATCCGTCGTCAACTCCACAAAGTCAGTCGAATCAAAGTCTTCTGAATAGTCAGAAGACGTCACGGAGGAAGGTCCGGGGGCCGAGCCATCGGCGTTTCGGTATTCTGAAGTCTCTGACGACGTGACGATGGTGGACGGCTTCTTGCATAGCTCTTCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAAAGCTAGAAATAGCTCAAATTA</pcr_primer_p1>
		<pcr_primer_p2>AAAAGATCAATATTTAGGCTTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTAAAGCTAGAAATAGCTCAAATTAACTCTAAATTCGTTGCAGGAAGGTCGTGAAGCACTCCCAAAGGCCGCCTATCAATACGGAGTCAAAAATGGAGAGGGAGGACGAAAGAATAAGAAGCAAACGGCTGTCTCAGAGGCCAAGAAACTGGACCGAGAGCTCAACGAGATCAATAAGATTATGGATAAGAGAAAGGCCGGAGAAGGAGGCGGTGGAGAGTATAAGAAGCCTAAATATTGATCTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTAAAGCTAGAAATAGCTCAAATTAACTCTAAATTCGTTGCAGGAAGGTCGTGAAGCACTCCCAAAGGCCGCCTATCAATACGGAGTCAAAAATGGAGAGGGAGGACGAAAGAATAAGAAGCAAWCGGCTGTCTCAGAGGCCAAGAAACTGGACCGAGAGCTCAACGAGATCAATAAGATTATGGATAAGAGAAAGGCCGGAGAAGGAGGCGGTGGAGAGTATAAGAAGCCTAAATATTGATCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19222</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>21098</contig_pos>
        <strand></strand>
        <context>AAAGGGAAAA[T/G]GTACAGATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AAATATTATGATTAAGAGAAAAAATGATAAAACTAAAAGAAAAGGGAAAA</left_flank>
        <right_flank>GTACAGATTTTCGGACACACAGAGAAATATACATTCAAATCAAACTGGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGCTCGAATTACCGTAAAACCTGTATTAGAAGGGCCCTCCAGAGGTATTCTGAAAAAAAATAGAAGGGCCCCTCTAATACAGGTTTTACGGTAGTTTTAAAGCTAGAAATAGCTCAAATTAACTCTAAATTCGTTGCAGGAAGGTCGTGAAGCACTCCCAAAGGCCGCCTATCAATACGGAGTCAAAAATGGAGAGGGAGGACGAAAGAATAAGAAGCAAACGGCTGTCTCAGAGGCCAAGAAACTGGACCGAGAGCTCAACGAGATCAATAAGATTATGGATAAGAGAAAGGCCGGAGAAGGAGGCGGTGGAGAGTATAAGAAGCCTAAATATTGATCTTTTCTGTTTAAAGTATTTTTAAGTTATAAAATTATTAATCAATTTAATATCAAATCAGAGAAAAAAGTGGGACAGAAGAAGCAGCGGGGGGAAAAGATCGGGAATTCAAATATTATGATTAAGAGAAAAAATGATAAAACTAAAAGAAAAGGGAAAATGTACAGATTTTCGGACACACAGAGAAATATACATTCAAATCAAACTGGAACTAGAATTAATCGGAATCCGTCGTCAACTCCACAAAGTCAGTCGAATCAAAGTCTTCTGAATAGTCAGAAGACGTCACGGAGGAAGGTCCGGGGGCCGAGCCATCGGCGTTTCGGTATTCTGAAGTCTCTGACGACGTGACGATGGTGGACGGCTTCTTGCATAGCTCTTCACTCTCATCCATCGAGAGTTTTAGAAGCTCGCCGGCGGTGATTTCCATGATTTCGGGCTGCTTTTTCTTGTTCATCATATCAGTGACGTCGTGGATGAGGGCTTTGGGAACCATAATGTACGTGTAGCCGATGGCAAGAGGGACGCCGAGTACTGAGAAAAAATTGGATTTGGGGTGGAAAATTTGGGGAATTTTCGAAATAAATTTCGAATTTGAGGCAAAAATACCTTCAGAAACATGCTTGACTTTTATGAATTTTTGTCCTAAAAATGATAAAAA</canonical>
            <polymorphic>ATAGCTCGAATTACCGTAAAACCTGTATTAGAAGGGCCCTCCAGAGGTATTCTGAAAAAAAATAGAAGGGCCCCTCTAATACAGGTTTTACGGTAGTTTTAAAGCTAGAAATAGCTCAAATTAACTCTAAATTCGTTGCAGGAAGGTCGTGAAGCACTCCCAAAGGCCGCCTATCAATACGGAGTCAAAAATGGAGAGGGAGGACGAAAGAATAAGAAGCAAACGGCTGTCTCAGAGGCCAAGAAACTGGACCGAGAGCTCAACGAGATCAATAAGATTATGGATAAGAGAAAGGCCGGAGAAGGAGGCGGTGGAGAGTATAAGAAGCCTAAATATTGATCTTTTCTGTTTAAAGTATTTTTAAGTTATAAAATTATTAATCAATTTAATATCAAATCAGAGAAAAAAGTGGGACAGAAGAAGCAGCGGGGGGAAAAGATCGGGAATTCAAATATTATGATTAAGAGAAAAAATGATAAAACTAAAAGAAAAGGGAAAAKGTACAGATTTTCGGACACACAGAGAAATATACATTCAAATCAAACTGGAACTAGAATTAATCGGAATCCGTCGTCAACTCCACAAAGTCAGTCGAATCAAAGTCTTCTGAATAGTCAGAAGACGTCACGGAGGAAGGTCCGGGGGCCGAGCCATCGGCGTTTCGGTATTCTGAAGTCTCTGACGACGTGACGATGGTGGACGGCTTCTTGCATAGCTCTTCACTCTCATCCATCGAGAGTTTTAGAAGCTCGCCGGCGGTGATTTCCATGATTTCGGGCTGCTTTTTCTTGTTCATCATATCAGTGACGTCGTGGATGAGGGCTTTGGGAACCATAATGTACGTGTAGCCGATGGCAAGAGGGACGCCGAGTACTGAGAAAAAATTGGATTTGGGGTGGAAAATTTGGGGAATTTTCGAAATAAATTTCGAATTTGAGGCAAAAATACCTTCAGAAACATGCTTGACTTTTATGAATTTTTGTCCTAAAAATGATAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGTACA</site>
                <isoschizomers>
                    <enzyme>AauI</enzyme>
                    <enzyme>Bsp1407I</enzyme>
                    <enzyme>BsrGI</enzyme>
                    <enzyme>SspBI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 370 130</canonical_bands>
                <polymorphic_bands>870 130</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGATCGGGAATTCAAATA</pcr_primer_p1>
		<pcr_primer_p2>AGAGACTTCAGAATACCGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAAGATCGGGAATTCAAATATTATGATTAAGAGAAAAAATGATAAAACTAAAAGAAAAGGGAAAATGTACAGATTTTCGGACACACAGAGAAATATACATTCAAATCAAACTGGAACTAGAATTAATCGGAATCCGTCGTCAACTCCACAAAGTCAGTCGAATCAAAGTCTTCTGAATAGTCAGAAGACGTCACGGAGGAAGGTCCGGGGGCCGAGCCATCGGCGTTTCGGTATTCTGAAGTCTCT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGATCGGGAATTCAAATATTATGATTAAGAGAAAAAATGATAAAACTAAAAGAAAAGGGAAAAKGTACAGATTTTCGGACACACAGAGAAATATACATTCAAATCAAACTGGAACTAGAATTAATCGGAATCCGTCGTCAACTCCACAAAGTCAGTCGAATCAAAGTCTTCTGAATAGTCAGAAGACGTCACGGAGGAAGGTCCGGGGGCCGAGCCATCGGCGTTTCGGTATTCTGAAGTCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19223</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>21139</contig_pos>
        <strand>+</strand>
        <context>ACATTCAAAT[A/C]AAACTGGAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGGGAAAATGTACAGATTTTCGGACACACAGAGAAATATACATTCAAAT</left_flank>
        <right_flank>AAACTGGAACTAGAATTAATCGGAATCCGTCGTCAACTCCACAAAGTCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAGGTATTCTGAAAAAAAATAGAAGGGCCCCTCTAATACAGGTTTTACGGTAGTTTTAAAGCTAGAAATAGCTCAAATTAACTCTAAATTCGTTGCAGGAAGGTCGTGAAGCACTCCCAAAGGCCGCCTATCAATACGGAGTCAAAAATGGAGAGGGAGGACGAAAGAATAAGAAGCAAACGGCTGTCTCAGAGGCCAAGAAACTGGACCGAGAGCTCAACGAGATCAATAAGATTATGGATAAGAGAAAGGCCGGAGAAGGAGGCGGTGGAGAGTATAAGAAGCCTAAATATTGATCTTTTCTGTTTAAAGTATTTTTAAGTTATAAAATTATTAATCAATTTAATATCAAATCAGAGAAAAAAGTGGGACAGAAGAAGCAGCGGGGGGAAAAGATCGGGAATTCAAATATTATGATTAAGAGAAAAAATGATAAAACTAAAAGAAAAGGGAAAATGTACAGATTTTCGGACACACAGAGAAATATACATTCAAATCAAACTGGAACTAGAATTAATCGGAATCCGTCGTCAACTCCACAAAGTCAGTCGAATCAAAGTCTTCTGAATAGTCAGAAGACGTCACGGAGGAAGGTCCGGGGGCCGAGCCATCGGCGTTTCGGTATTCTGAAGTCTCTGACGACGTGACGATGGTGGACGGCTTCTTGCATAGCTCTTCACTCTCATCCATCGAGAGTTTTAGAAGCTCGCCGGCGGTGATTTCCATGATTTCGGGCTGCTTTTTCTTGTTCATCATATCAGTGACGTCGTGGATGAGGGCTTTGGGAACCATAATGTACGTGTAGCCGATGGCAAGAGGGACGCCGAGTACTGAGAAAAAATTGGATTTGGGGTGGAAAATTTGGGGAATTTTCGAAATAAATTTCGAATTTGAGGCAAAAATACCTTCAGAAACATGCTTGACTTTTATGAATTTTTGTCCTAAAAATGATAAAAATGGATAAATTTACTCACCAACAGCCACACCAGCAACTACCG</canonical>
            <polymorphic>CAGAGGTATTCTGAAAAAAAATAGAAGGGCCCCTCTAATACAGGTTTTACGGTAGTTTTAAAGCTAGAAATAGCTCAAATTAACTCTAAATTCGTTGCAGGAAGGTCGTGAAGCACTCCCAAAGGCCGCCTATCAATACGGAGTCAAAAATGGAGAGGGAGGACGAAAGAATAAGAAGCAAACGGCTGTCTCAGAGGCCAAGAAACTGGACCGAGAGCTCAACGAGATCAATAAGATTATGGATAAGAGAAAGGCCGGAGAAGGAGGCGGTGGAGAGTATAAGAAGCCTAAATATTGATCTTTTCTGTTTAAAGTATTTTTAAGTTATAAAATTATTAATCAATTTAATATCAAATCAGAGAAAAAAGTGGGACAGAAGAAGCAGCGGGGGGAAAAGATCGGGAATTCAAATATTATGATTAAGAGAAAAAATGATAAAACTAAAAGAAAAGGGAAAATGTACAGATTTTCGGACACACAGAGAAATATACATTCAAATMAAACTGGAACTAGAATTAATCGGAATCCGTCGTCAACTCCACAAAGTCAGTCGAATCAAAGTCTTCTGAATAGTCAGAAGACGTCACGGAGGAAGGTCCGGGGGCCGAGCCATCGGCGTTTCGGTATTCTGAAGTCTCTGACGACGTGACGATGGTGGACGGCTTCTTGCATAGCTCTTCACTCTCATCCATCGAGAGTTTTAGAAGCTCGCCGGCGGTGATTTCCATGATTTCGGGCTGCTTTTTCTTGTTCATCATATCAGTGACGTCGTGGATGAGGGCTTTGGGAACCATAATGTACGTGTAGCCGATGGCAAGAGGGACGCCGAGTACTGAGAAAAAATTGGATTTGGGGTGGAAAATTTGGGGAATTTTCGAAATAAATTTCGAATTTGAGGCAAAAATACCTTCAGAAACATGCTTGACTTTTATGAATTTTTGTCCTAAAAATGATAAAAATGGATAAATTTACTCACCAACAGCCACACCAGCAACTACCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAAACTAAAAGAAAAGGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGTGAAGAGCTATGCAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAAAACTAAAAGAAAAGGGAAAATGTACAGATTTTCGGACACACAGAGAAATATACATTCAAATCAAACTGGAACTAGAATTAATCGGAATCCGTCGTCAACTCCACAAAGTCAGTCGAATCAAAGTCTTCTGAATAGTCAGAAGACGTCACGGAGGAAGGTCCGGGGGCCGAGCCATCGGCGTTTCGGTATTCTGAAGTCTCTGACGACGTGACGATGGTGGACGGCTTCTTGCATAGCTCTTCACTC</canonical_amplicon>
		<polymorphic_amplicon>ATAAAACTAAAAGAAAAGGGAAAATGTACAGATTTTCGGACACACAGAGAAATATACATTCAAATMAAACTGGAACTAGAATTAATCGGAATCCGTCGTCAACTCCACAAAGTCAGTCGAATCAAAGTCTTCTGAATAGTCAGAAGACGTCACGGAGGAAGGTCCGGGGGCCGAGCCATCGGCGTTTCGGTATTCTGAAGTCTCTGACGACGTGACGATGGTGGACGGCTTCTTGCATAGCTCTTCACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19224</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>21156</contig_pos>
        <strand>+</strand>
        <context>GAACTAGAAT[G/T]AATCGGAATC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTCGGACACACAGAGAAATATACATTCAAATCAAACTGGAACTAGAAT</left_flank>
        <right_flank>AATCGGAATCCGTCGTCAACTCCACAAAGTCAGTCGAATCAAAGTCTTCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATAGAAGGGCCCCTCTAATACAGGTTTTACGGTAGTTTTAAAGCTAGAAATAGCTCAAATTAACTCTAAATTCGTTGCAGGAAGGTCGTGAAGCACTCCCAAAGGCCGCCTATCAATACGGAGTCAAAAATGGAGAGGGAGGACGAAAGAATAAGAAGCAAACGGCTGTCTCAGAGGCCAAGAAACTGGACCGAGAGCTCAACGAGATCAATAAGATTATGGATAAGAGAAAGGCCGGAGAAGGAGGCGGTGGAGAGTATAAGAAGCCTAAATATTGATCTTTTCTGTTTAAAGTATTTTTAAGTTATAAAATTATTAATCAATTTAATATCAAATCAGAGAAAAAAGTGGGACAGAAGAAGCAGCGGGGGGAAAAGATCGGGAATTCAAATATTATGATTAAGAGAAAAAATGATAAAACTAAAAGAAAAGGGAAAATGTACAGATTTTCGGACACACAGAGAAATATACATTCAAATCAAACTGGAACTAGAATTAATCGGAATCCGTCGTCAACTCCACAAAGTCAGTCGAATCAAAGTCTTCTGAATAGTCAGAAGACGTCACGGAGGAAGGTCCGGGGGCCGAGCCATCGGCGTTTCGGTATTCTGAAGTCTCTGACGACGTGACGATGGTGGACGGCTTCTTGCATAGCTCTTCACTCTCATCCATCGAGAGTTTTAGAAGCTCGCCGGCGGTGATTTCCATGATTTCGGGCTGCTTTTTCTTGTTCATCATATCAGTGACGTCGTGGATGAGGGCTTTGGGAACCATAATGTACGTGTAGCCGATGGCAAGAGGGACGCCGAGTACTGAGAAAAAATTGGATTTGGGGTGGAAAATTTGGGGAATTTTCGAAATAAATTTCGAATTTGAGGCAAAAATACCTTCAGAAACATGCTTGACTTTTATGAATTTTTGTCCTAAAAATGATAAAAATGGATAAATTTACTCACCAACAGCCACACCAGCAACTACCGGTGACACTATAGCCGAT</canonical>
            <polymorphic>AAAATAGAAGGGCCCCTCTAATACAGGTTTTACGGTAGTTTTAAAGCTAGAAATAGCTCAAATTAACTCTAAATTCGTTGCAGGAAGGTCGTGAAGCACTCCCAAAGGCCGCCTATCAATACGGAGTCAAAAATGGAGAGGGAGGACGAAAGAATAAGAAGCAAACGGCTGTCTCAGAGGCCAAGAAACTGGACCGAGAGCTCAACGAGATCAATAAGATTATGGATAAGAGAAAGGCCGGAGAAGGAGGCGGTGGAGAGTATAAGAAGCCTAAATATTGATCTTTTCTGTTTAAAGTATTTTTAAGTTATAAAATTATTAATCAATTTAATATCAAATCAGAGAAAAAAGTGGGACAGAAGAAGCAGCGGGGGGAAAAGATCGGGAATTCAAATATTATGATTAAGAGAAAAAATGATAAAACTAAAAGAAAAGGGAAAATGTACAGATTTTCGGACACACAGAGAAATATACATTCAAATCAAACTGGAACTAGAATKAATCGGAATCCGTCGTCAACTCCACAAAGTCAGTCGAATCAAAGTCTTCTGAATAGTCAGAAGACGTCACGGAGGAAGGTCCGGGGGCCGAGCCATCGGCGTTTCGGTATTCTGAAGTCTCTGACGACGTGACGATGGTGGACGGCTTCTTGCATAGCTCTTCACTCTCATCCATCGAGAGTTTTAGAAGCTCGCCGGCGGTGATTTCCATGATTTCGGGCTGCTTTTTCTTGTTCATCATATCAGTGACGTCGTGGATGAGGGCTTTGGGAACCATAATGTACGTGTAGCCGATGGCAAGAGGGACGCCGAGTACTGAGAAAAAATTGGATTTGGGGTGGAAAATTTGGGGAATTTTCGAAATAAATTTCGAATTTGAGGCAAAAATACCTTCAGAAACATGCTTGACTTTTATGAATTTTTGTCCTAAAAATGATAAAAATGGATAAATTTACTCACCAACAGCCACACCAGCAACTACCGGTGACACTATAGCCGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 319 180</canonical_bands>
                <polymorphic_bands>681 319</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>501 229 96 75 41 22 16 11 9</canonical_bands>
                <polymorphic_bands>597 229 75 41 22 16 11 9</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>328 242 110 62 60 52 44 32 19 13 11 11 9 7</canonical_bands>
                <polymorphic_bands>438 242 62 60 52 44 32 19 13 11 11 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAAACTAAAAGAAAAGGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGTGAAGAGCTATGCAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAAAACTAAAAGAAAAGGGAAAATGTACAGATTTTCGGACACACAGAGAAATATACATTCAAATCAAACTGGAACTAGAATTAATCGGAATCCGTCGTCAACTCCACAAAGTCAGTCGAATCAAAGTCTTCTGAATAGTCAGAAGACGTCACGGAGGAAGGTCCGGGGGCCGAGCCATCGGCGTTTCGGTATTCTGAAGTCTCTGACGACGTGACGATGGTGGACGGCTTCTTGCATAGCTCTTCACTC</canonical_amplicon>
		<polymorphic_amplicon>ATAAAACTAAAAGAAAAGGGAAAATGTACAGATTTTCGGACACACAGAGAAATATACATTCAAATCAAACTGGAACTAGAATKAATCGGAATCCGTCGTCAACTCCACAAAGTCAGTCGAATCAAAGTCTTCTGAATAGTCAGAAGACGTCACGGAGGAAGGTCCGGGGGCCGAGCCATCGGCGTTTCGGTATTCTGAAGTCTCTGACGACGTGACGATGGTGGACGGCTTCTTGCATAGCTCTTCACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19225</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>21224</contig_pos>
        <strand>+</strand>
        <context>CAGAAGACGT[C/T]ACGGAGGAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACTCCACAAAGTCAGTCGAATCAAAGTCTTCTGAATAGTCAGAAGACGT</left_flank>
        <right_flank>ACGGAGGAAGGTCCGGGGGCCGAGCCATCGGCGTTTCGGTATTCTGAAGT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAAATTCGTTGCAGGAAGGTCGTGAAGCACTCCCAAAGGCCGCCTATCAATACGGAGTCAAAAATGGAGAGGGAGGACGAAAGAATAAGAAGCAAACGGCTGTCTCAGAGGCCAAGAAACTGGACCGAGAGCTCAACGAGATCAATAAGATTATGGATAAGAGAAAGGCCGGAGAAGGAGGCGGTGGAGAGTATAAGAAGCCTAAATATTGATCTTTTCTGTTTAAAGTATTTTTAAGTTATAAAATTATTAATCAATTTAATATCAAATCAGAGAAAAAAGTGGGACAGAAGAAGCAGCGGGGGGAAAAGATCGGGAATTCAAATATTATGATTAAGAGAAAAAATGATAAAACTAAAAGAAAAGGGAAAATGTACAGATTTTCGGACACACAGAGAAATATACATTCAAATCAAACTGGAACTAGAATTAATCGGAATCCGTCGTCAACTCCACAAAGTCAGTCGAATCAAAGTCTTCTGAATAGTCAGAAGACGTCACGGAGGAAGGTCCGGGGGCCGAGCCATCGGCGTTTCGGTATTCTGAAGTCTCTGACGACGTGACGATGGTGGACGGCTTCTTGCATAGCTCTTCACTCTCATCCATCGAGAGTTTTAGAAGCTCGCCGGCGGTGATTTCCATGATTTCGGGCTGCTTTTTCTTGTTCATCATATCAGTGACGTCGTGGATGAGGGCTTTGGGAACCATAATGTACGTGTAGCCGATGGCAAGAGGGACGCCGAGTACTGAGAAAAAATTGGATTTGGGGTGGAAAATTTGGGGAATTTTCGAAATAAATTTCGAATTTGAGGCAAAAATACCTTCAGAAACATGCTTGACTTTTATGAATTTTTGTCCTAAAAATGATAAAAATGGATAAATTTACTCACCAACAGCCACACCAGCAACTACCGGTGACACTATAGCCGATCCAGTCACCGCCGCCGCCGTCGAAATCGCTCTTTTAGCCTTCGACTCGGATTTCATCTTCCGATAGAC</canonical>
            <polymorphic>CTAAATTCGTTGCAGGAAGGTCGTGAAGCACTCCCAAAGGCCGCCTATCAATACGGAGTCAAAAATGGAGAGGGAGGACGAAAGAATAAGAAGCAAACGGCTGTCTCAGAGGCCAAGAAACTGGACCGAGAGCTCAACGAGATCAATAAGATTATGGATAAGAGAAAGGCCGGAGAAGGAGGCGGTGGAGAGTATAAGAAGCCTAAATATTGATCTTTTCTGTTTAAAGTATTTTTAAGTTATAAAATTATTAATCAATTTAATATCAAATCAGAGAAAAAAGTGGGACAGAAGAAGCAGCGGGGGGAAAAGATCGGGAATTCAAATATTATGATTAAGAGAAAAAATGATAAAACTAAAAGAAAAGGGAAAATGTACAGATTTTCGGACACACAGAGAAATATACATTCAAATCAAACTGGAACTAGAATTAATCGGAATCCGTCGTCAACTCCACAAAGTCAGTCGAATCAAAGTCTTCTGAATAGTCAGAAGACGTYACGGAGGAAGGTCCGGGGGCCGAGCCATCGGCGTTTCGGTATTCTGAAGTCTCTGACGACGTGACGATGGTGGACGGCTTCTTGCATAGCTCTTCACTCTCATCCATCGAGAGTTTTAGAAGCTCGCCGGCGGTGATTTCCATGATTTCGGGCTGCTTTTTCTTGTTCATCATATCAGTGACGTCGTGGATGAGGGCTTTGGGAACCATAATGTACGTGTAGCCGATGGCAAGAGGGACGCCGAGTACTGAGAAAAAATTGGATTTGGGGTGGAAAATTTGGGGAATTTTCGAAATAAATTTCGAATTTGAGGCAAAAATACCTTCAGAAACATGCTTGACTTTTATGAATTTTTGTCCTAAAAATGATAAAAATGGATAAATTTACTCACCAACAGCCACACCAGCAACTACCGGTGACACTATAGCCGATCCAGTCACCGCCGCCGCCGTCGAAATCGCTCTTTTAGCCTTCGACTCGGATTTCATCTTCCGATAGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACGTC</site>
                <isoschizomers>
                    <enzyme>AatII</enzyme>
                    <enzyme>ZraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 316 185</canonical_bands>
                <polymorphic_bands>684 316</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>496 262 185 57</canonical_bands>
                <polymorphic_bands>681 262 57</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>157 118 106 98 63 62 61 53 45 45 39 31 25 24 18 16 10 9 8 5 3 2 2</canonical_bands>
                <polymorphic_bands>157 118 107 106 98 63 61 53 45 39 31 25 24 18 16 10 9 8 5 3 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>497 238 117 65 63 20</canonical_bands>
                <polymorphic_bands>560 238 117 65 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAAACTAAAAGAAAAGGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGTGAAGAGCTATGCAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAAAACTAAAAGAAAAGGGAAAATGTACAGATTTTCGGACACACAGAGAAATATACATTCAAATCAAACTGGAACTAGAATTAATCGGAATCCGTCGTCAACTCCACAAAGTCAGTCGAATCAAAGTCTTCTGAATAGTCAGAAGACGTCACGGAGGAAGGTCCGGGGGCCGAGCCATCGGCGTTTCGGTATTCTGAAGTCTCTGACGACGTGACGATGGTGGACGGCTTCTTGCATAGCTCTTCACTC</canonical_amplicon>
		<polymorphic_amplicon>ATAAAACTAAAAGAAAAGGGAAAATGTACAGATTTTCGGACACACAGAGAAATATACATTCAAATCAAACTGGAACTAGAATTAATCGGAATCCGTCGTCAACTCCACAAAGTCAGTCGAATCAAAGTCTTCTGAATAGTCAGAAGACGTYACGGAGGAAGGTCCGGGGGCCGAGCCATCGGCGTTTCGGTATTCTGAAGTCTCTGACGACGTGACGATGGTGGACGGCTTCTTGCATAGCTCTTCACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19270</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>76149</contig_pos>
        <strand>+</strand>
        <context>CGTAGATATA[A/G]AGTTGGAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTACAAAGAGAGTGTTCCTTGAGGTATTTTTGGAATCCGCGTAGATATA</left_flank>
        <right_flank>AGTTGGAAGAAGACGTCAACACCATAGTCGCGACGAGAGTTGACAAGAAG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGTGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGGCACGCAGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTGAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACCAAAAAACTTCGAAAAATCTCCTGTCCCCCCACCTTTAATTAAAATTTTTCAATTTGTTTGGTTTGTTCTTTACAGATAAAAAAAAATGTATCTTACATTTCTCAAATACTTTCTGTACGCTGTCATATGGCTTGAAAAGAGGGTAGTGTTCAAGTAATAGTCTCGAGTTCCACGACCCAGTGCCAAAGTGGATTGATCGATCTGAAAATTGAAATATGGTTCTAGAAGACTCCACGAAATTTGAGGGTTCTTACAAAGAGAGTGTTCCTTGAGGTATTTTTGGAATCCGCGTAGATATAAAGTTGGAAGAAGACGTCAACACCATAGTCGCGACGAGAGTTGACAAGAAGGTCTGGAAAAGTGGAATTTTTCTCGGTTCCTGTCAAAGATATGGGCAATGATCAACTGATAAAATGTTTATCATAACACTCCAAGACGCCGTATCTGCTCAAATAAAACCATACCTTAAGCCGTCATCTTTGAGCTCAATTAGCTCGATTCCTAATACAGATACAAAAATATAGTTAACTAACAAAATGTTTGTCATAAGATAAGCAACATTTTATCAGTTGAAAGTTTTTTAATACCTCTTATAGAAATTGAGATAATTGAGCTGAAAGTGACAGTATAAGGTGGTCTTCCATTAGAGGGATTACGGTATTTCTATATCTCATTAAAAGTGATACAAAATTTCAAAAAATCCTTTTTTGCAGAATCATGACAGTAGCTAGATTTGAGGAAACACTTTGAAAATTTCAGGTGATTTGAATCAAACGTAAAATTATATTTCTACCAATTTT</canonical>
            <polymorphic>ACATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGTGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGGCACGCAGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTGAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACCAAAAAACTTCGAAAAATCTCCTGTCCCCCCACCTTTAATTAAAATTTTTCAATTTGTTTGGTTTGTTCTTTACAGATAAAAAAAAATGTATCTTACATTTCTCAAATACTTTCTGTACGCTGTCATATGGCTTGAAAAGAGGGTAGTGTTCAAGTAATAGTCTCGAGTTCCACGACCCAGTGCCAAAGTGGATTGATCGATCTGAAAATTGAAATATGGTTCTAGAAGACTCCACGAAATTTGAGGGTTCTTACAAAGAGAGTGTTCCTTGAGGTATTTTTGGAATCCGCGTAGATATARAGTTGGAAGAAGACGTCAACACCATAGTCGCGACGAGAGTTGACAAGAAGGTCTGGAAAAGTGGAATTTTTCTCGGTTCCTGTCAAAGATATGGGCAATGATCAACTGATAAAATGTTTATCATAACACTCCAAGACGCCGTATCTGCTCAAATAAAACCATACCTTAAGCCGTCATCTTTGAGCTCAATTAGCTCGATTCCTAATACAGATACAAAAATATAGTTAACTAACAAAATGTTTGTCATAAGATAAGCAACATTTTATCAGTTGAAAGTTTTTTAATACCTCTTATAGAAATTGAGATAATTGAGCTGAAAGTGACAGTATAAGGTGGTCTTCCATTAGAGGGATTACGGTATTTCTATATCTCATTAAAAGTGATACAAAATTTCAAAAAATCCTTTTTTGCAGAATCATGACAGTAGCTAGATTTGAGGAAACACTTTGAAAATTTCAGGTGATTTGAATCAAACGTAAAATTATATTTCTACCAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATACTTTCTGTACGCTGTCAT</pcr_primer_p1>
		<pcr_primer_p2>CCAGACCTTCTTGTCAACTCT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAATACTTTCTGTACGCTGTCATATGGCTTGAAAAGAGGGTAGTGTTCAAGTAATAGTCTCGAGTTCCACGACCCAGTGCCAAAGTGGATTGATCGATCTGAAAATTGAAATATGGTTCTAGAAGACTCCACGAAATTTGAGGGTTCTTACAAAGAGAGTGTTCCTTGAGGTATTTTTGGAATCCGCGTAGATATAAAGTTGGAAGAAGACGTCAACACCATAGTCGCGACGAGAGTTGACAAGAAGGTCTGG</canonical_amplicon>
		<polymorphic_amplicon>AAATACTTTCTGTACGCTGTCATATGGCTTGAAAAGAGGGTAGTGTTCAAGTAATAGTCTCGAGTTCCACGACCCAGTGCCAAAGTGGATTGATCGATCTGAAAATTGAAATATGGTTCTAGAAGACTCCACGAAATTTGAGGGTTCTTACAAAGAGAGTGTTCCTTGAGGTATTTTTGGAATCCGCGTAGATATARAGTTGGAAGAAGACGTCAACACCATAGTCGCGACGAGAGTTGACAAGAAGGTCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19271</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>78899</contig_pos>
        <strand>+</strand>
        <context>AAATAGGTGT[C/G]GTTGAGAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTTCTCTTGAGTGAATGAAGTGCTTGTGAGTGATAACTAAATAGGTGT</left_flank>
        <right_flank>GTTGAGAAAAATCACTGATAAGAAAAAAATAAAGCGAACAAAAAGGAAGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTTGAGCTCAATTATCTCGGTTCATTCAAAAGATATCAATCAGTGATCAGCTAATAAAAAGTTGATGTTAACATGATAAACATTTCGTCCGTTGAACACTTTTTGATATCTTCCCTAGGAACCGAGTTAAATTGTGTCAAAGATTGAAGTGTAGGAGTTCCTTTAACAGAAACCCTCTTATTCATTGTCACTTCGATCCTAATTATCTTTTTTCGTAAATTACTTCTTCTTTGAAAATCAATTTTCTGATATTTAACAATTTTCGAGTCCTCCCTAGTGGCCTAATTTTCCTTCCTAGGCCATCCCAACCCCGACCAACCTTGGTGTTGGCGTATCACTATTCTCACTGATCGTAATCAATTGCATTTGACTCTCATTGCTCCGCAGGTGCACATAATCCGGCGGGTCGTTTCCGAATGGCATTCTGCAAGAAAACATTCTTCGCTTTTTTTCTCTTGAGTGAATGAAGTGCTTGTGAGTGATAACTAAATAGGTGTGGTTGAGAAAAATCACTGATAAGAAAAAAATAAAGCGAACAAAAAGGAAGTTCTATACCACGTTATTCAAACAAAATGGATGATAGGTCACATTGGAAATGTTTTTTCAGAAAAATAACAATATGAATGGGTAAATATGTACAAATAGGAACACCTGGGAAGGAGACAAACTCACCCAAAAAATTCGAGAGCCTGATTGACTAGAGCGTTTCTGACCATTAGCGAAATTTTTGGGGGAAAGAATGAAAAAAAATTATGAAAGGCAGAGTGAGGAAAGGAGAAGGACAGGTGTCAAGTTACTAAATATATATAAACAAATTACATTTGGAGGGGAAAGAGCAGAAAGTTTTAAACAAATTTTTTATAGAAATGTTAGAAATTGAATGTCAGAAATCACCTGTGCCTCTGATAGAAACGCACTATTTACCAAAAGGATGAGCATAAGTACGACATATGTATAACCTGTAACAGAAGGGGCCTCAAAGTTTAAACTTTAAGCCA</canonical>
            <polymorphic>ACTTTGAGCTCAATTATCTCGGTTCATTCAAAAGATATCAATCAGTGATCAGCTAATAAAAAGTTGATGTTAACATGATAAACATTTCGTCCGTTGAACACTTTTTGATATCTTCCCTAGGAACCGAGTTAAATTGTGTCAAAGATTGAAGTGTAGGAGTTCCTTTAACAGAAACCCTCTTATTCATTGTCACTTCGATCCTAATTATCTTTTTTCGTAAATTACTTCTTCTTTGAAAATCAATTTTCTGATATTTAACAATTTTCGAGTCCTCCCTAGTGGCCTAATTTTCCTTCCTAGGCCATCCCAACCCCGACCAACCTTGGTGTTGGCGTATCACTATTCTCACTGATCGTAATCAATTGCATTTGACTCTCATTGCTCCGCAGGTGCACATAATCCGGCGGGTCGTTTCCGAATGGCATTCTGCAAGAAAACATTCTTCGCTTTTTTTCTCTTGAGTGAATGAAGTGCTTGTGAGTGATAACTAAATAGGTGTSGTTGAGAAAAATCACTGATAAGAAAAAAATAAAGCGAACAAAAAGGAAGTTCTATACCACGTTATTCAAACAAAATGGATGATAGGTCACATTGGAAATGTTTTTTCAGAAAAATAACAATATGAATGGGTAAATATGTACAAATAGGAACACCTGGGAAGGAGACAAACTCACCCAAAAAATTCGAGAGCCTGATTGACTAGAGCGTTTCTGACCATTAGCGAAATTTTTGGGGGAAAGAATGAAAAAAAATTATGAAAGGCAGAGTGAGGAAAGGAGAAGGACAGGTGTCAAGTTACTAAATATATATAAACAAATTACATTTGGAGGGGAAAGAGCAGAAAGTTTTAAACAAATTTTTTATAGAAATGTTAGAAATTGAATGTCAGAAATCACCTGTGCCTCTGATAGAAACGCACTATTTACCAAAAGGATGAGCATAAGTACGACATATGTATAACCTGTAACAGAAGGGGCCTCAAAGTTTAAACTTTAAGCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>105 96 89 82 70 63 53 47 47 45 44 39 38 30 21 21 17 15 15 14 11 9 9 6 6 4 2 2</canonical_bands>
                <polymorphic_bands>105 96 89 82 70 63 53 47 47 45 44 39 38 30 21 21 17 16 15 15 11 9 9 6 6 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCACTATTCTCACTGATCGTAATC</pcr_primer_p1>
		<pcr_primer_p2>ATCATCCATTTTGTTTGAATAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCACTATTCTCACTGATCGTAATCAATTGCATTTGACTCTCATTGCTCCGCAGGTGCACATAATCCGGCGGGTCGTTTCCGAATGGCATTCTGCAAGAAAACATTCTTCGCTTTTTTTCTCTTGAGTGAATGAAGTGCTTGTGAGTGATAACTAAATAGGTGTGGTTGAGAAAAATCACTGATAAGAAAAAAATAAAGCGAACAAAAAGGAAGTTCTATACCACGTTATTCAAACAAAATGGATGAT</canonical_amplicon>
		<polymorphic_amplicon>TCACTATTCTCACTGATCGTAATCAATTGCATTTGACTCTCATTGCTCCGCAGGTGCACATAATCCGGCGGGTCGTTTCCGAATGGCATTCTGCAAGAAAACATTCTTCGCTTTTTTTCTCTTGAGTGAATGAAGTGCTTGTGAGTGATAACTAAATAGGTGTSGTTGAGAAAAATCACTGATAAGAAAAAAATAAAGCGAACAAAAAGGAAGTTCTATACCACGTTATTCAAACAAAATGGATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19272</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>154629</contig_pos>
        <strand>+</strand>
        <context>GGATGGGCTG[C/T]CAGATTAACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTCGTTTTTGGGTTTCGGATGGAAAGATCAGAGAATCGGATGGGCTG</left_flank>
        <right_flank>CAGATTAACAAGACGCAGTTGTTTCTAATCGAAACTAATTGGGGATAGAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTGTGAGACTTGTAACACTTCAAAGGCGCGAGAATTCTAAAGGATTCGAGGAAGAGAGAAACAGGCGTATCGGGAACGAAATCGCATAAAAAGTTATGGGTTTTTCTTTGCCTTTACTTCCACCGCATGATGATGGGAATACCCAGGGCTTCGAATTTGGCATGATATGTTTTAAAATTCAGAAATCTAGGTCACCCAAATCTCAAGGTTTTGCAAAATCGACTCTCAGGAGCACAGAGACACAAAGTTCGTTTGGCTGTGCCTCTCTTTTTAAACGGGAAAAAAATAAGGGGATGAGGAGAAAATGACATTCGATACTTTATCAAAACCTCAAAAACGGCCGGCACTTGTTTCTTGAATCACAGCAAAAACGGACGGAAAGGAGGATCTTGTTTTCTAACAACATCAACAAAAATCAAGTGTATTTGAATAGAAAGGATTTTTGGAAATTTCGTTTTTGGGTTTCGGATGGAAAGATCAGAGAATCGGATGGGCTGCCAGATTAACAAGACGCAGTTGTTTCTAATCGAAACTAATTGGGGATAGAACGAAGATCAATTCACTTGACACATCAAGAACTTCAATCAACCTAATAGAGTCTTTACGGATGATACCTGTACAAACCGAAAACATCTTCTAGAATCACCCTAATACGTGTTCGTGTAATAAACTCATAATCGTGGTCACATAAATGCCGCATGGCCAATCAGAAGAGATAGTTCGCCGCTCGTCGTCCTAAAATTGCATCCCGCGCGCGGAACAATAAAACTGTAATAAATGACGGTACATGTGAAAGTACGTTCTTCTTCGTCTACCGCCACATACAACAAACAGATAAACCCACAAAGTAGAGAGAAGAGATGGAGAATGACCGGAAAACGAACACCTTTCTCTCGTTTATGAACACGTCAAGGCCGGTAGATCCGATAAGAGAATCTATAGACTGGCAAATTGGTAATCTGACTAGCTGAACGGAAGGAAGGGAACTAGTGTCGAGA</canonical>
            <polymorphic>GGTTGTGAGACTTGTAACACTTCAAAGGCGCGAGAATTCTAAAGGATTCGAGGAAGAGAGAAACAGGCGTATCGGGAACGAAATCGCATAAAAAGTTATGGGTTTTTCTTTGCCTTTACTTCCACCGCATGATGATGGGAATACCCAGGGCTTCGAATTTGGCATGATATGTTTTAAAATTCAGAAATCTAGGTCACCCAAATCTCAAGGTTTTGCAAAATCGACTCTCAGGAGCACAGAGACACAAAGTTCGTTTGGCTGTGCCTCTCTTTTTAAACGGGAAAAAAATAAGGGGATGAGGAGAAAATGACATTCGATACTTTATCAAAACCTCAAAAACGGCCGGCACTTGTTTCTTGAATCACAGCAAAAACGGACGGAAAGGAGGATCTTGTTTTCTAACAACATCAACAAAAATCAAGTGTATTTGAATAGAAAGGATTTTTGGAAATTTCGTTTTTGGGTTTCGGATGGAAAGATCAGAGAATCGGATGGGCTGYCAGATTAACAAGACGCAGTTGTTTCTAATCGAAACTAATTGGGGATAGAACGAAGATCAATTCACTTGACACATCAAGAACTTCAATCAACCTAATAGAGTCTTTACGGATGATACCTGTACAAACCGAAAACATCTTCTAGAATCACCCTAATACGTGTTCGTGTAATAAACTCATAATCGTGGTCACATAAATGCCGCATGGCCAATCAGAAGAGATAGTTCGCCGCTCGTCGTCCTAAAATTGCATCCCGCGCGCGGAACAATAAAACTGTAATAAATGACGGTACATGTGAAAGTACGTTCTTCTTCGTCTACCGCCACATACAACAAACAGATAAACCCACAAAGTAGAGAGAAGAGATGGAGAATGACCGGAAAACGAACACCTTTCTCTCGTTTATGAACACGTCAAGGCCGGTAGATCCGATAAGAGAATCTATAGACTGGCAAATTGGTAATCTGACTAGCTGAACGGAAGGAAGGGAACTAGTGTCGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>499 272 200 29</canonical_bands>
                <polymorphic_bands>699 272 29</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTTTTCTAACAACATCAACAA</pcr_primer_p1>
		<pcr_primer_p2>CTAGAAGATGTTTTCGGTTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTGTTTTCTAACAACATCAACAAAAATCAAGTGTATTTGAATAGAAAGGATTTTTGGAAATTTCGTTTTTGGGTTTCGGATGGAAAGATCAGAGAATCGGATGGGCTGCCAGATTAACAAGACGCAGTTGTTTCTAATCGAAACTAATTGGGGATAGAACGAAGATCAATTCACTTGACACATCAAGAACTTCAATCAACCTAATAGAGTCTTTACGGATGATACCTGTACAAACCGAAAACATCTTCTAG</canonical_amplicon>
		<polymorphic_amplicon>TTGTTTTCTAACAACATCAACAAAAATCAAGTGTATTTGAATAGAAAGGATTTTTGGAAATTTCGTTTTTGGGTTTCGGATGGAAAGATCAGAGAATCGGATGGGCTGYCAGATTAACAAGACGCAGTTGTTTCTAATCGAAACTAATTGGGGATAGAACGAAGATCAATTCACTTGACACATCAAGAACTTCAATCAACCTAATAGAGTCTTTACGGATGATACCTGTACAAACCGAAAACATCTTCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19273</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>157289</contig_pos>
        <strand>+</strand>
        <context>AGGTGTTCAT[A/G]TACATAGCCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGTAGACACTCTCCTCACCACGATCCGTTGACGATATGGAGGTGTTCAT</left_flank>
        <right_flank>TACATAGCCGGGATCGGCGGCCGAGGTCTCTGCAATAAGCAAATGGAATG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAAATAAATTAGATTTATTGGATTTCTTTCAATCAGTGATCAAGCTCAATGTTTCAAACCTACCGCTTTCGCTGTTGTTACTTGAGGAACAACAGAATCTGCAGCAGATTTGAGTGGGACGACGAGCTTCTCGATGATGTAGTGATCGATTTCCACGTGTGCTCCAGGAGCCAATCTGACCGAGAGAGCCATGCAATTCTCACGAGTCGATGCTCGAACAATGAAGTTCCCGGGTTCCATTCGACGAAGGAGGTGGAGAACTTCAGGACGACCCATATGTGGGAGGTACCTGGAAAAAAAGTTTTTAGATATTTGAATTGATAGCTTATCCAAAATGGGCAACGGGAAACTTACCATACTGCATGTGTCCGTATAATCTGCTCCAACAACGTCACACTTTTTCCATTCATAGAAGACGTCGACGAGTTGCGTTTGAGCACAAAATCTGAGTAGACACTCTCCTCACCACGATCCGTTGACGATATGGAGGTGTTCATGTACATAGCCGGGATCGGCGGCCGAGGTCTCTGCAATAAGCAAATGGAATGAAAAAAGATCTGGTGGCCTCTGAAGACGAATGGTCACCAATTTGCCATTTGATTCATCTCGTTGGCGGGAAGGTCATCACAATGAGAATTAGATGGAAATTGGGAACGAAGATGAGGAATACGGAGGGGAGGGTATGGTTTCAATTTCACCTCTTTCAACCTTTCGGGAATAAATGATGGGTGAAAGAATGGGGGAAATGATTGGTTTAATAATTGACCTGACTTCTTGATGCAAGCGATTACATCTTCAGAGTCTTCATAGAAGACGTTCTCATTTATTTTGAAAGTAGGACTACGGTAGTGAGGTGAAAACTAGAATATTTAAAATAAACCATAGAGACAATACGATTTGAAAGTCGATTTTATATTTTCCCGGAAGGAGAATTCTGAAGAAAAAAAAAACGAATTTTAAAACTCATAAAAATATATACAACCCCCATTTCACAAATA</canonical>
            <polymorphic>AAGAAATAAATTAGATTTATTGGATTTCTTTCAATCAGTGATCAAGCTCAATGTTTCAAACCTACCGCTTTCGCTGTTGTTACTTGAGGAACAACAGAATCTGCAGCAGATTTGAGTGGGACGACGAGCTTCTCGATGATGTAGTGATCGATTTCCACGTGTGCTCCAGGAGCCAATCTGACCGAGAGAGCCATGCAATTCTCACGAGTCGATGCTCGAACAATGAAGTTCCCGGGTTCCATTCGACGAAGGAGGTGGAGAACTTCAGGACGACCCATATGTGGGAGGTACCTGGAAAAAAAGTTTTTAGATATTTGAATTGATAGCTTATCCAAAATGGGCAACGGGAAACTTACCATACTGCATGTGTCCGTATAATCTGCTCCAACAACGTCACACTTTTTCCATTCATAGAAGACGTCGACGAGTTGCGTTTGAGCACAAAATCTGAGTAGACACTCTCCTCACCACGATCCGTTGACGATATGGAGGTGTTCATRTACATAGCCGGGATCGGCGGCCGAGGTCTCTGCAATAAGCAAATGGAATGAAAAAAGATCTGGTGGCCTCTGAAGACGAATGGTCACCAATTTGCCATTTGATTCATCTCGTTGGCGGGAAGGTCATCACAATGAGAATTAGATGGAAATTGGGAACGAAGATGAGGAATACGGAGGGGAGGGTATGGTTTCAATTTCACCTCTTTCAACCTTTCGGGAATAAATGATGGGTGAAAGAATGGGGGAAATGATTGGTTTAATAATTGACCTGACTTCTTGATGCAAGCGATTACATCTTCAGAGTCTTCATAGAAGACGTTCTCATTTATTTTGAAAGTAGGACTACGGTAGTGAGGTGAAAACTAGAATATTTAAAATAAACCATAGAGACAATACGATTTGAAAGTCGATTTTATATTTTCCCGGAAGGAGAATTCTGAAGAAAAAAAAAACGAATTTTAAAACTCATAAAAATATATACAACCCCCATTTCACAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGTACA</site>
                <isoschizomers>
                    <enzyme>AauI</enzyme>
                    <enzyme>Bsp1407I</enzyme>
                    <enzyme>BsrGI</enzyme>
                    <enzyme>SspBI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 289 212</canonical_bands>
                <polymorphic_bands>711 289</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 192 172 133</canonical_bands>
                <polymorphic_bands>636 192 172</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAATTGATAGCTTATCCAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCATTCCATTTGCTTATT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTGAATTGATAGCTTATCCAAAATGGGCAACGGGAAACTTACCATACTGCATGTGTCCGTATAATCTGCTCCAACAACGTCACACTTTTTCCATTCATAGAAGACGTCGACGAGTTGCGTTTGAGCACAAAATCTGAGTAGACACTCTCCTCACCACGATCCGTTGACGATATGGAGGTGTTCATGTACATAGCCGGGATCGGCGGCCGAGGTCTCTGCAATAAGCAAATGGAATGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTGAATTGATAGCTTATCCAAAATGGGCAACGGGAAACTTACCATACTGCATGTGTCCGTATAATCTGCTCCAACAACGTCACACTTTTTCCATTCATAGAAGACGTCGACGAGTTGCGTTTGAGCACAAAATCTGAGTAGACACTCTCCTCACCACGATCCGTTGACGATATGGAGGTGTTCATRTACATAGCCGGGATCGGCGGCCGAGGTCTCTGCAATAAGCAAATGGAATGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19274</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>156936</contig_pos>
        <strand>+</strand>
        <context>TGATGTAGTG[A/G]TCGATTTCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATCTGCAGCAGATTTGAGTGGGACGACGAGCTTCTCGATGATGTAGTG</left_flank>
        <right_flank>TCGATTTCCACGTGTGCTCCAGGAGCCAATCTGACCGAGAGAGCCATGCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCTGATGGAAGTTGAAGTCGATGTTCGAGCTCGTCTCTGGAAATTAAAAAATTGAGAGTACGTAAAACCTGTAATAAAAGGGCCCCTAACTTTTAGCTTTGAGCCAATGTTTTTCGGTTCCTTTCAAAGATAAAAAATAGTTTTCAACTGATGAATTCAGAAATGTTTTGTCAGTTGACAAACTTTGGATACCGTGCATAGTAATTGAGATAATTGAGATCAAATTTGAGGGCCCTTCTATTACAGGTTCAAACAAAGGTGAGAAAACTCACTCATTAACACAATAGTGTTCAATTAAAAGAGGAAGTGATCGAAACGTGAGTGGGCTGCCTTCCAGTCGAACCTATAGAAAAAGAAATAAATTAGATTTATTGGATTTCTTTCAATCAGTGATCAAGCTCAATGTTTCAAACCTACCGCTTTCGCTGTTGTTACTTGAGGAACAACAGAATCTGCAGCAGATTTGAGTGGGACGACGAGCTTCTCGATGATGTAGTGATCGATTTCCACGTGTGCTCCAGGAGCCAATCTGACCGAGAGAGCCATGCAATTCTCACGAGTCGATGCTCGAACAATGAAGTTCCCGGGTTCCATTCGACGAAGGAGGTGGAGAACTTCAGGACGACCCATATGTGGGAGGTACCTGGAAAAAAAGTTTTTAGATATTTGAATTGATAGCTTATCCAAAATGGGCAACGGGAAACTTACCATACTGCATGTGTCCGTATAATCTGCTCCAACAACGTCACACTTTTTCCATTCATAGAAGACGTCGACGAGTTGCGTTTGAGCACAAAATCTGAGTAGACACTCTCCTCACCACGATCCGTTGACGATATGGAGGTGTTCATGTACATAGCCGGGATCGGCGGCCGAGGTCTCTGCAATAAGCAAATGGAATGAAAAAAGATCTGGTGGCCTCTGAAGACGAATGGTCACCAATTTGCCATTTGATTCATCTCGTTGGCGGGAAGGTCATCACAATGAGAATTAGATGGA</canonical>
            <polymorphic>GGCTGATGGAAGTTGAAGTCGATGTTCGAGCTCGTCTCTGGAAATTAAAAAATTGAGAGTACGTAAAACCTGTAATAAAAGGGCCCCTAACTTTTAGCTTTGAGCCAATGTTTTTCGGTTCCTTTCAAAGATAAAAAATAGTTTTCAACTGATGAATTCAGAAATGTTTTGTCAGTTGACAAACTTTGGATACCGTGCATAGTAATTGAGATAATTGAGATCAAATTTGAGGGCCCTTCTATTACAGGTTCAAACAAAGGTGAGAAAACTCACTCATTAACACAATAGTGTTCAATTAAAAGAGGAAGTGATCGAAACGTGAGTGGGCTGCCTTCCAGTCGAACCTATAGAAAAAGAAATAAATTAGATTTATTGGATTTCTTTCAATCAGTGATCAAGCTCAATGTTTCAAACCTACCGCTTTCGCTGTTGTTACTTGAGGAACAACAGAATCTGCAGCAGATTTGAGTGGGACGACGAGCTTCTCGATGATGTAGTGRTCGATTTCCACGTGTGCTCCAGGAGCCAATCTGACCGAGAGAGCCATGCAATTCTCACGAGTCGATGCTCGAACAATGAAGTTCCCGGGTTCCATTCGACGAAGGAGGTGGAGAACTTCAGGACGACCCATATGTGGGAGGTACCTGGAAAAAAAGTTTTTAGATATTTGAATTGATAGCTTATCCAAAATGGGCAACGGGAAACTTACCATACTGCATGTGTCCGTATAATCTGCTCCAACAACGTCACACTTTTTCCATTCATAGAAGACGTCGACGAGTTGCGTTTGAGCACAAAATCTGAGTAGACACTCTCCTCACCACGATCCGTTGACGATATGGAGGTGTTCATGTACATAGCCGGGATCGGCGGCCGAGGTCTCTGCAATAAGCAAATGGAATGAAAAAAGATCTGGTGGCCTCTGAAGACGAATGGTCACCAATTTGCCATTTGATTCATCTCGTTGGCGGGAAGGTCATCACAATGAGAATTAGATGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>326 218 106 91 91 83 45 40</canonical_bands>
                <polymorphic_bands>432 218 91 91 83 45 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTACTTGAGGAACAACAGAATC</pcr_primer_p1>
		<pcr_primer_p2>TTGGATAAGCTATCAATTCAAATA</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>GTTACTTGAGGAACAACAGAATCTGCAGCAGATTTGAGTGGGACGACGAGCTTCTCGATGATGTAGTGATCGATTTCCACGTGTGCTCCAGGAGCCAATCTGACCGAGAGAGCCATGCAATTCTCACGAGTCGATGCTCGAACAATGAAGTTCCCGGGTTCCATTCGACGAAGGAGGTGGAGAACTTCAGGACGACCCATATGTGGGAGGTACCTGGAAAAAAAGTTTTTAGATATTTGAATTGATAGCTTATCCAA</canonical_amplicon>
		<polymorphic_amplicon>GTTACTTGAGGAACAACAGAATCTGCAGCAGATTTGAGTGGGACGACGAGCTTCTCGATGATGTAGTGRTCGATTTCCACGTGTGCTCCAGGAGCCAATCTGACCGAGAGAGCCATGCAATTCTCACGAGTCGATGCTCGAACAATGAAGTTCCCGGGTTCCATTCGACGAAGGAGGTGGAGAACTTCAGGACGACCCATATGTGGGAGGTACCTGGAAAAAAAGTTTTTAGATATTTGAATTGATAGCTTATCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19275</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>165287</contig_pos>
        <strand>+</strand>
        <context>CGCCTTCTTC[A/G]ATTTCCCAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATCTCGTTTTCTCATTTCTATGACTCATGCAAACATACCGCCTTCTTC</left_flank>
        <right_flank>ATTTCCCAACAACTCATTTCTCGCGCATTTACCATTCGTTCATTCCCAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGGCACAGACATTTTACTAGTTTAAACATTTTTGATATCTTGCATAAAAGCCAAGAAAAATAGATCAAACATGAAAGTGTGGAGGCCCTTTTATTACAGGTTTTACGACACTTGTTACAAATTTTCCGATCTTTATTGTTCTGAGAATTTTACTTTCCACAAATGGTTTGGTCTAATATTTTCAATATTTTTTCTCTTAATGAAGATCTCTTAATAAATACTTTTCCCCCGAAATGACCGTTACATTTTATCAAATTACAGCCCGTTACAAAAACATCTCCAAATTGAGTGCACACCAACTGCTTCCTATAATTCCGATTCTCTCCAAAATATTCAATTTTTTGAAGACATGTCCCGTCTCTATTTATAATTGAGTTATCCAATAATAATATTGTTCTCTCTCCCTCGTTTTCCCATATGATCTGTTTTATTTCCACTTATAAAATTTCATCTCGTTTTCTCATTTCTATGACTCATGCAAACATACCGCCTTCTTCGATTTCCCAACAACTCATTTCTCGCGCATTTACCATTCGTTCATTCCCAAATAAGAACTTTTCTTCGTCTTGTTCCCTTTTTCTAACTTTTCCACTTCTTTCCTCCTAAATTCCCCCTTCTTCTTCCCCTGGCTTTCCGCCCCCACTGATCTCTTCTCTTCCAACTGATCCAAAATCTTTGCGATGGCATCGAAATAGTTTTGATTCTTGAGAGACTCAGACACAAAATAGAGAAAAGATACAGAAGAGGCGAGAATGTGTGTGATAGAAGAAGAAGAGCCCATGCTGCTGTAAAGATCGAAAAAGAGGGAAGAGGTGGAGCTGATGGGATCCTGGGGAGAGTCGGAGGAAAGAGAGAAAGAGAGATAGAAAACACCACAACAATCAGTTTTAACTTTGATTTCAGTATCGTTTTCAGTATTGATTATTTTATTTATGTTCTTGTTAAGCTCGCTTTAATCGGAACTTGATACAGTATCCCAGTTGGTTCATTTTCTTTTT</canonical>
            <polymorphic>AATGGCACAGACATTTTACTAGTTTAAACATTTTTGATATCTTGCATAAAAGCCAAGAAAAATAGATCAAACATGAAAGTGTGGAGGCCCTTTTATTACAGGTTTTACGACACTTGTTACAAATTTTCCGATCTTTATTGTTCTGAGAATTTTACTTTCCACAAATGGTTTGGTCTAATATTTTCAATATTTTTTCTCTTAATGAAGATCTCTTAATAAATACTTTTCCCCCGAAATGACCGTTACATTTTATCAAATTACAGCCCGTTACAAAAACATCTCCAAATTGAGTGCACACCAACTGCTTCCTATAATTCCGATTCTCTCCAAAATATTCAATTTTTTGAAGACATGTCCCGTCTCTATTTATAATTGAGTTATCCAATAATAATATTGTTCTCTCTCCCTCGTTTTCCCATATGATCTGTTTTATTTCCACTTATAAAATTTCATCTCGTTTTCTCATTTCTATGACTCATGCAAACATACCGCCTTCTTCRATTTCCCAACAACTCATTTCTCGCGCATTTACCATTCGTTCATTCCCAAATAAGAACTTTTCTTCGTCTTGTTCCCTTTTTCTAACTTTTCCACTTCTTTCCTCCTAAATTCCCCCTTCTTCTTCCCCTGGCTTTCCGCCCCCACTGATCTCTTCTCTTCCAACTGATCCAAAATCTTTGCGATGGCATCGAAATAGTTTTGATTCTTGAGAGACTCAGACACAAAATAGAGAAAAGATACAGAAGAGGCGAGAATGTGTGTGATAGAAGAAGAAGAGCCCATGCTGCTGTAAAGATCGAAAAAGAGGGAAGAGGTGGAGCTGATGGGATCCTGGGGAGAGTCGGAGGAAAGAGAGAAAGAGAGATAGAAAACACCACAACAATCAGTTTTAACTTTGATTTCAGTATCGTTTTCAGTATTGATTATTTTATTTATGTTCTTGTTAAGCTCGCTTTAATCGGAACTTGATACAGTATCCCAGTTGGTTCATTTTCTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 202 191 108</canonical_bands>
                <polymorphic_bands>690 202 108</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACATGTCCCGTCTCTATTTAT</pcr_primer_p1>
		<pcr_primer_p2>GAAAAGTTAGAAAAAGGGAACAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AGACATGTCCCGTCTCTATTTATAATTGAGTTATCCAATAATAATATTGTTCTCTCTCCCTCGTTTTCCCATATGATCTGTTTTATTTCCACTTATAAAATTTCATCTCGTTTTCTCATTTCTATGACTCATGCAAACATACCGCCTTCTTCGATTTCCCAACAACTCATTTCTCGCGCATTTACCATTCGTTCATTCCCAAATAAGAACTTTTCTTCGTCTTGTTCCCTTTTTCTAACTTTTC</canonical_amplicon>
		<polymorphic_amplicon>AGACATGTCCCGTCTCTATTTATAATTGAGTTATCCAATAATAATATTGTTCTCTCTCCCTCGTTTTCCCATATGATCTGTTTTATTTCCACTTATAAAATTTCATCTCGTTTTCTCATTTCTATGACTCATGCAAACATACCGCCTTCTTCRATTTCCCAACAACTCATTTCTCGCGCATTTACCATTCGTTCATTCCCAAATAAGAACTTTTCTTCGTCTTGTTCCCTTTTTCTAACTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19276</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>165468</contig_pos>
        <strand>+</strand>
        <context>AAAATCTTTG[C/G]GATGGCATCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCTTTCCGCCCCCACTGATCTCTTCTCTTCCAACTGATCCAAAATCTTTG</left_flank>
        <right_flank>GATGGCATCGAAATAGTTTTGATTCTTGAGAGACTCAGACACAAAATAGA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAATATTTTTTCTCTTAATGAAGATCTCTTAATAAATACTTTTCCCCCGAAATGACCGTTACATTTTATCAAATTACAGCCCGTTACAAAAACATCTCCAAATTGAGTGCACACCAACTGCTTCCTATAATTCCGATTCTCTCCAAAATATTCAATTTTTTGAAGACATGTCCCGTCTCTATTTATAATTGAGTTATCCAATAATAATATTGTTCTCTCTCCCTCGTTTTCCCATATGATCTGTTTTATTTCCACTTATAAAATTTCATCTCGTTTTCTCATTTCTATGACTCATGCAAACATACCGCCTTCTTCGATTTCCCAACAACTCATTTCTCGCGCATTTACCATTCGTTCATTCCCAAATAAGAACTTTTCTTCGTCTTGTTCCCTTTTTCTAACTTTTCCACTTCTTTCCTCCTAAATTCCCCCTTCTTCTTCCCCTGGCTTTCCGCCCCCACTGATCTCTTCTCTTCCAACTGATCCAAAATCTTTGCGATGGCATCGAAATAGTTTTGATTCTTGAGAGACTCAGACACAAAATAGAGAAAAGATACAGAAGAGGCGAGAATGTGTGTGATAGAAGAAGAAGAGCCCATGCTGCTGTAAAGATCGAAAAAGAGGGAAGAGGTGGAGCTGATGGGATCCTGGGGAGAGTCGGAGGAAAGAGAGAAAGAGAGATAGAAAACACCACAACAATCAGTTTTAACTTTGATTTCAGTATCGTTTTCAGTATTGATTATTTTATTTATGTTCTTGTTAAGCTCGCTTTAATCGGAACTTGATACAGTATCCCAGTTGGTTCATTTTCTTTTTTTTCAGTTATTTTTTCTAGCCCATTTTGATACCGATTTAAACGACTCCAATATATCATCTGGGACCCTAGTTAAAATACCGTATAAACTCAAATAGTAGCCCACCCGAACCGTCAATTTTGAGCTCAGTTATCTCGACTCCTGTAAGAGATATGAAAAAGTTGTCAACTGATGAAATCATT</canonical>
            <polymorphic>TTTCAATATTTTTTCTCTTAATGAAGATCTCTTAATAAATACTTTTCCCCCGAAATGACCGTTACATTTTATCAAATTACAGCCCGTTACAAAAACATCTCCAAATTGAGTGCACACCAACTGCTTCCTATAATTCCGATTCTCTCCAAAATATTCAATTTTTTGAAGACATGTCCCGTCTCTATTTATAATTGAGTTATCCAATAATAATATTGTTCTCTCTCCCTCGTTTTCCCATATGATCTGTTTTATTTCCACTTATAAAATTTCATCTCGTTTTCTCATTTCTATGACTCATGCAAACATACCGCCTTCTTCGATTTCCCAACAACTCATTTCTCGCGCATTTACCATTCGTTCATTCCCAAATAAGAACTTTTCTTCGTCTTGTTCCCTTTTTCTAACTTTTCCACTTCTTTCCTCCTAAATTCCCCCTTCTTCTTCCCCTGGCTTTCCGCCCCCACTGATCTCTTCTCTTCCAACTGATCCAAAATCTTTGSGATGGCATCGAAATAGTTTTGATTCTTGAGAGACTCAGACACAAAATAGAGAAAAGATACAGAAGAGGCGAGAATGTGTGTGATAGAAGAAGAAGAGCCCATGCTGCTGTAAAGATCGAAAAAGAGGGAAGAGGTGGAGCTGATGGGATCCTGGGGAGAGTCGGAGGAAAGAGAGAAAGAGAGATAGAAAACACCACAACAATCAGTTTTAACTTTGATTTCAGTATCGTTTTCAGTATTGATTATTTTATTTATGTTCTTGTTAAGCTCGCTTTAATCGGAACTTGATACAGTATCCCAGTTGGTTCATTTTCTTTTTTTTCAGTTATTTTTTCTAGCCCATTTTGATACCGATTTAAACGACTCCAATATATCATCTGGGACCCTAGTTAAAATACCGTATAAACTCAAATAGTAGCCCACCCGAACCGTCAATTTTGAGCTCAGTTATCTCGACTCCTGTAAGAGATATGAAAAAGTTGTCAACTGATGAAATCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCATTCCCAAATAAGAACTTT</pcr_primer_p1>
		<pcr_primer_p2>GCTCTTCTTCTTCTATCACACAC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTTCATTCCCAAATAAGAACTTTTCTTCGTCTTGTTCCCTTTTTCTAACTTTTCCACTTCTTTCCTCCTAAATTCCCCCTTCTTCTTCCCCTGGCTTTCCGCCCCCACTGATCTCTTCTCTTCCAACTGATCCAAAATCTTTGCGATGGCATCGAAATAGTTTTGATTCTTGAGAGACTCAGACACAAAATAGAGAAAAGATACAGAAGAGGCGAGAATGTGTGTGATAGAAGAAGAAGAGC</canonical_amplicon>
		<polymorphic_amplicon>GTTCATTCCCAAATAAGAACTTTTCTTCGTCTTGTTCCCTTTTTCTAACTTTTCCACTTCTTTCCTCCTAAATTCCCCCTTCTTCTTCCCCTGGCTTTCCGCCCCCACTGATCTCTTCTCTTCCAACTGATCCAAAATCTTTGSGATGGCATCGAAATAGTTTTGATTCTTGAGAGACTCAGACACAAAATAGAGAAAAGATACAGAAGAGGCGAGAATGTGTGTGATAGAAGAAGAAGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19277</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>168679</contig_pos>
        <strand>+</strand>
        <context>CACTAAAAAT[C/T]ATTATTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCCCAGTTATTTTTCAGATATTGGGTTGTGGTCTTTTCCACTAAAAAT</left_flank>
        <right_flank>ATTATTTTTTAAATACCGTAATCACTAAAATGAAAGTTTACCCAAACTGT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGTGGAGCAGTTTGGTCAGCGAGTGAGTTTGACAGATTTTAATATCTCATTGTGAGGTTAGGACTGAAGATAATGAATCAATTTGAAGCATTTGATTACCGAATGTCCCTTAACTTTCAACTTCGAGCCAATTTATCTCGATTTCGATACATATGAAAGTTGTCAAAAAGTGGTCAAGTGACCAGATATTCCTGATGTCATGATTAAAATTTTGTCAGTTGATAACTTTTTGGTATCTCTAAGTGTATCTGTTACATAAGCTGAATACCTTCCGGATGGTTAAATAAAAAAGAAGTGGAAGTTGATAACATTTTTTTGAAGCAAATGTTCCTTGGAAAATGATTTAATGTTCTGCAATTTTTTTGTTTCTGAGTTGTTCTGTGAAAACCTCGGCAACTATAAATTCAGTTTGAATTGTCGTCTGCTAATTTTGGAATGTTCCAGAACAATCCCAGTTATTTTTCAGATATTGGGTTGTGGTCTTTTCCACTAAAAATCATTATTTTTTAAATACCGTAATCACTAAAATGAAAGTTTACCCAAACTGTCAACTTTGAGCCAATTTATCTCGGTTCCTTCGAAAGATACCAAAAAGTGATAAACTGACAAAATATTTTTCAAACTATGATAAACATTTTATCAATTGACAAAGTTTTAATATCTTTTTAAAGAGCCGAGTTAATTGAGCGCAAAGTTAACAGTTCGGGTGGGCTTCTATCAGAGGAAGTACGGTACTTCTTTTCCACCAAATAATCTGAAAATTTGTAACGTTTTCTCCAGCTAACTGCTTCGCTGTCTCAATCATGACTCATGTCGGAATGGCGATGTTCATGCTGTTCGCTTCATCAATATCCTGTCTTACCGGATGGGCGATCTCTAGATTCGGACTATTTGGAGTTCCTCCCTCTTTTCCTATGAGCAGCATTCTCAATTATTCTGGAATCGTGCTCTTGATTTTTGGGTAAAGATCCCTTCTAGTTGGGAAGCTATGAAAGTCA</canonical>
            <polymorphic>TTGGTGGAGCAGTTTGGTCAGCGAGTGAGTTTGACAGATTTTAATATCTCATTGTGAGGTTAGGACTGAAGATAATGAATCAATTTGAAGCATTTGATTACCGAATGTCCCTTAACTTTCAACTTCGAGCCAATTTATCTCGATTTCGATACATATGAAAGTTGTCAAAAAGTGGTCAAGTGACCAGATATTCCTGATGTCATGATTAAAATTTTGTCAGTTGATAACTTTTTGGTATCTCTAAGTGTATCTGTTACATAAGCTGAATACCTTCCGGATGGTTAAATAAAAAAGAAGTGGAAGTTGATAACATTTTTTTGAAGCAAATGTTCCTTGGAAAATGATTTAATGTTCTGCAATTTTTTTGTTTCTGAGTTGTTCTGTGAAAACCTCGGCAACTATAAATTCAGTTTGAATTGTCGTCTGCTAATTTTGGAATGTTCCAGAACAATCCCAGTTATTTTTCAGATATTGGGTTGTGGTCTTTTCCACTAAAAATYATTATTTTTTAAATACCGTAATCACTAAAATGAAAGTTTACCCAAACTGTCAACTTTGAGCCAATTTATCTCGGTTCCTTCGAAAGATACCAAAAAGTGATAAACTGACAAAATATTTTTCAAACTATGATAAACATTTTATCAATTGACAAAGTTTTAATATCTTTTTAAAGAGCCGAGTTAATTGAGCGCAAAGTTAACAGTTCGGGTGGGCTTCTATCAGAGGAAGTACGGTACTTCTTTTCCACCAAATAATCTGAAAATTTGTAACGTTTTCTCCAGCTAACTGCTTCGCTGTCTCAATCATGACTCATGTCGGAATGGCGATGTTCATGCTGTTCGCTTCATCAATATCCTGTCTTACCGGATGGGCGATCTCTAGATTCGGACTATTTGGAGTTCCTCCCTCTTTTCCTATGAGCAGCATTCTCAATTATTCTGGAATCGTGCTCTTGATTTTTGGGTAAAGATCCCTTCTAGTTGGGAAGCTATGAAAGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAATCCCAGTTATTTTTCAGA</pcr_primer_p1>
		<pcr_primer_p2>AGATTATTTGGTGGAAAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>ACAATCCCAGTTATTTTTCAGATATTGGGTTGTGGTCTTTTCCACTAAAAATCATTATTTTTTAAATACCGTAATCACTAAAATGAAAGTTTACCCAAACTGTCAACTTTGAGCCAATTTATCTCGGTTCCTTCGAAAGATACCAAAAAGTGATAAACTGACAAAATATTTTTCAAACTATGATAAACATTTTATCAATTGACAAAGTTTTAATATCTTTTTAAAGAGCCGAGTTAATTGAGCGCAAAGTTAACAGTTCGGGTGGGCTTCTATCAGAGGAAGTACGGTACTTCTTTTCCACCAAATAATCT</canonical_amplicon>
		<polymorphic_amplicon>ACAATCCCAGTTATTTTTCAGATATTGGGTTGTGGTCTTTTCCACTAAAAATYATTATTTTTTAAATACCGTAATCACTAAAATGAAAGTTTACCCAAACTGTCAACTTTGAGCCAATTTATCTCGGTTCCTTCGAAAGATACCAAAAAGTGATAAACTGACAAAATATTTTTCAAACTATGATAAACATTTTATCAATTGACAAAGTTTTAATATCTTTTTAAAGAGCCGAGTTAATTGAGCGCAAAGTTAACAGTTCGGGTGGGCTTCTATCAGAGGAAGTACGGTACTTCTTTTCCACCAAATAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19278</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>168649</contig_pos>
        <strand>+</strand>
        <context>ATTTTTCAGA[G/T]ATTGGGTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGTCTGCTAATTTTGGAATGTTCCAGAACAATCCCAGTTATTTTTCAGA</left_flank>
        <right_flank>ATTGGGTTGTGGTCTTTTCCACTAAAAATCATTATTTTTTAAATACCGTA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTCCGGGAATCTATAGTTTCGCAATGATTGGTGGAGCAGTTTGGTCAGCGAGTGAGTTTGACAGATTTTAATATCTCATTGTGAGGTTAGGACTGAAGATAATGAATCAATTTGAAGCATTTGATTACCGAATGTCCCTTAACTTTCAACTTCGAGCCAATTTATCTCGATTTCGATACATATGAAAGTTGTCAAAAAGTGGTCAAGTGACCAGATATTCCTGATGTCATGATTAAAATTTTGTCAGTTGATAACTTTTTGGTATCTCTAAGTGTATCTGTTACATAAGCTGAATACCTTCCGGATGGTTAAATAAAAAAGAAGTGGAAGTTGATAACATTTTTTTGAAGCAAATGTTCCTTGGAAAATGATTTAATGTTCTGCAATTTTTTTGTTTCTGAGTTGTTCTGTGAAAACCTCGGCAACTATAAATTCAGTTTGAATTGTCGTCTGCTAATTTTGGAATGTTCCAGAACAATCCCAGTTATTTTTCAGATATTGGGTTGTGGTCTTTTCCACTAAAAATCATTATTTTTTAAATACCGTAATCACTAAAATGAAAGTTTACCCAAACTGTCAACTTTGAGCCAATTTATCTCGGTTCCTTCGAAAGATACCAAAAAGTGATAAACTGACAAAATATTTTTCAAACTATGATAAACATTTTATCAATTGACAAAGTTTTAATATCTTTTTAAAGAGCCGAGTTAATTGAGCGCAAAGTTAACAGTTCGGGTGGGCTTCTATCAGAGGAAGTACGGTACTTCTTTTCCACCAAATAATCTGAAAATTTGTAACGTTTTCTCCAGCTAACTGCTTCGCTGTCTCAATCATGACTCATGTCGGAATGGCGATGTTCATGCTGTTCGCTTCATCAATATCCTGTCTTACCGGATGGGCGATCTCTAGATTCGGACTATTTGGAGTTCCTCCCTCTTTTCCTATGAGCAGCATTCTCAATTATTCTGGAATCGTGCTCTTGATTTTTGGGTAAAGA</canonical>
            <polymorphic>AATTTCCGGGAATCTATAGTTTCGCAATGATTGGTGGAGCAGTTTGGTCAGCGAGTGAGTTTGACAGATTTTAATATCTCATTGTGAGGTTAGGACTGAAGATAATGAATCAATTTGAAGCATTTGATTACCGAATGTCCCTTAACTTTCAACTTCGAGCCAATTTATCTCGATTTCGATACATATGAAAGTTGTCAAAAAGTGGTCAAGTGACCAGATATTCCTGATGTCATGATTAAAATTTTGTCAGTTGATAACTTTTTGGTATCTCTAAGTGTATCTGTTACATAAGCTGAATACCTTCCGGATGGTTAAATAAAAAAGAAGTGGAAGTTGATAACATTTTTTTGAAGCAAATGTTCCTTGGAAAATGATTTAATGTTCTGCAATTTTTTTGTTTCTGAGTTGTTCTGTGAAAACCTCGGCAACTATAAATTCAGTTTGAATTGTCGTCTGCTAATTTTGGAATGTTCCAGAACAATCCCAGTTATTTTTCAGAKATTGGGTTGTGGTCTTTTCCACTAAAAATCATTATTTTTTAAATACCGTAATCACTAAAATGAAAGTTTACCCAAACTGTCAACTTTGAGCCAATTTATCTCGGTTCCTTCGAAAGATACCAAAAAGTGATAAACTGACAAAATATTTTTCAAACTATGATAAACATTTTATCAATTGACAAAGTTTTAATATCTTTTTAAAGAGCCGAGTTAATTGAGCGCAAAGTTAACAGTTCGGGTGGGCTTCTATCAGAGGAAGTACGGTACTTCTTTTCCACCAAATAATCTGAAAATTTGTAACGTTTTCTCCAGCTAACTGCTTCGCTGTCTCAATCATGACTCATGTCGGAATGGCGATGTTCATGCTGTTCGCTTCATCAATATCCTGTCTTACCGGATGGGCGATCTCTAGATTCGGACTATTTGGAGTTCCTCCCTCTTTTCCTATGAGCAGCATTCTCAATTATTCTGGAATCGTGCTCTTGATTTTTGGGTAAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTCTGCTAATTTTGGAATG</pcr_primer_p1>
		<pcr_primer_p2>AGATTATTTGGTGGAAAAGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>338</pcr_amplicon_size>
		<canonical_amplicon>CGTCTGCTAATTTTGGAATGTTCCAGAACAATCCCAGTTATTTTTCAGATATTGGGTTGTGGTCTTTTCCACTAAAAATCATTATTTTTTAAATACCGTAATCACTAAAATGAAAGTTTACCCAAACTGTCAACTTTGAGCCAATTTATCTCGGTTCCTTCGAAAGATACCAAAAAGTGATAAACTGACAAAATATTTTTCAAACTATGATAAACATTTTATCAATTGACAAAGTTTTAATATCTTTTTAAAGAGCCGAGTTAATTGAGCGCAAAGTTAACAGTTCGGGTGGGCTTCTATCAGAGGAAGTACGGTACTTCTTTTCCACCAAATAATCT</canonical_amplicon>
		<polymorphic_amplicon>CGTCTGCTAATTTTGGAATGTTCCAGAACAATCCCAGTTATTTTTCAGAKATTGGGTTGTGGTCTTTTCCACTAAAAATCATTATTTTTTAAATACCGTAATCACTAAAATGAAAGTTTACCCAAACTGTCAACTTTGAGCCAATTTATCTCGGTTCCTTCGAAAGATACCAAAAAGTGATAAACTGACAAAATATTTTTCAAACTATGATAAACATTTTATCAATTGACAAAGTTTTAATATCTTTTTAAAGAGCCGAGTTAATTGAGCGCAAAGTTAACAGTTCGGGTGGGCTTCTATCAGAGGAAGTACGGTACTTCTTTTCCACCAAATAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19279</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>168593</contig_pos>
        <strand>+</strand>
        <context>AATTCAGTTT[C/G]AATTGTCGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTGTTTCTGAGTTGTTCTGTGAAAACCTCGGCAACTATAAATTCAGTTT</left_flank>
        <right_flank>AATTGTCGTCTGCTAATTTTGGAATGTTCCAGAACAATCCCAGTTATTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGTTCATGTGTTTGGGTAGTTATACCACAAGTTTCGGCGTTTATGCGTACATGGAATTTCCGGGAATCTATAGTTTCGCAATGATTGGTGGAGCAGTTTGGTCAGCGAGTGAGTTTGACAGATTTTAATATCTCATTGTGAGGTTAGGACTGAAGATAATGAATCAATTTGAAGCATTTGATTACCGAATGTCCCTTAACTTTCAACTTCGAGCCAATTTATCTCGATTTCGATACATATGAAAGTTGTCAAAAAGTGGTCAAGTGACCAGATATTCCTGATGTCATGATTAAAATTTTGTCAGTTGATAACTTTTTGGTATCTCTAAGTGTATCTGTTACATAAGCTGAATACCTTCCGGATGGTTAAATAAAAAAGAAGTGGAAGTTGATAACATTTTTTTGAAGCAAATGTTCCTTGGAAAATGATTTAATGTTCTGCAATTTTTTTGTTTCTGAGTTGTTCTGTGAAAACCTCGGCAACTATAAATTCAGTTTGAATTGTCGTCTGCTAATTTTGGAATGTTCCAGAACAATCCCAGTTATTTTTCAGATATTGGGTTGTGGTCTTTTCCACTAAAAATCATTATTTTTTAAATACCGTAATCACTAAAATGAAAGTTTACCCAAACTGTCAACTTTGAGCCAATTTATCTCGGTTCCTTCGAAAGATACCAAAAAGTGATAAACTGACAAAATATTTTTCAAACTATGATAAACATTTTATCAATTGACAAAGTTTTAATATCTTTTTAAAGAGCCGAGTTAATTGAGCGCAAAGTTAACAGTTCGGGTGGGCTTCTATCAGAGGAAGTACGGTACTTCTTTTCCACCAAATAATCTGAAAATTTGTAACGTTTTCTCCAGCTAACTGCTTCGCTGTCTCAATCATGACTCATGTCGGAATGGCGATGTTCATGCTGTTCGCTTCATCAATATCCTGTCTTACCGGATGGGCGATCTCTAGATTCGGACTATTTGGAGTTCCTCCCTCTTTTC</canonical>
            <polymorphic>GTTGTTCATGTGTTTGGGTAGTTATACCACAAGTTTCGGCGTTTATGCGTACATGGAATTTCCGGGAATCTATAGTTTCGCAATGATTGGTGGAGCAGTTTGGTCAGCGAGTGAGTTTGACAGATTTTAATATCTCATTGTGAGGTTAGGACTGAAGATAATGAATCAATTTGAAGCATTTGATTACCGAATGTCCCTTAACTTTCAACTTCGAGCCAATTTATCTCGATTTCGATACATATGAAAGTTGTCAAAAAGTGGTCAAGTGACCAGATATTCCTGATGTCATGATTAAAATTTTGTCAGTTGATAACTTTTTGGTATCTCTAAGTGTATCTGTTACATAAGCTGAATACCTTCCGGATGGTTAAATAAAAAAGAAGTGGAAGTTGATAACATTTTTTTGAAGCAAATGTTCCTTGGAAAATGATTTAATGTTCTGCAATTTTTTTGTTTCTGAGTTGTTCTGTGAAAACCTCGGCAACTATAAATTCAGTTTSAATTGTCGTCTGCTAATTTTGGAATGTTCCAGAACAATCCCAGTTATTTTTCAGATATTGGGTTGTGGTCTTTTCCACTAAAAATCATTATTTTTTAAATACCGTAATCACTAAAATGAAAGTTTACCCAAACTGTCAACTTTGAGCCAATTTATCTCGGTTCCTTCGAAAGATACCAAAAAGTGATAAACTGACAAAATATTTTTCAAACTATGATAAACATTTTATCAATTGACAAAGTTTTAATATCTTTTTAAAGAGCCGAGTTAATTGAGCGCAAAGTTAACAGTTCGGGTGGGCTTCTATCAGAGGAAGTACGGTACTTCTTTTCCACCAAATAATCTGAAAATTTGTAACGTTTTCTCCAGCTAACTGCTTCGCTGTCTCAATCATGACTCATGTCGGAATGGCGATGTTCATGCTGTTCGCTTCATCAATATCCTGTCTTACCGGATGGGCGATCTCTAGATTCGGACTATTTGGAGTTCCTCCCTCTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGTTACATAAGCTGAATACCTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTAGTGGAAAAGACCACAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTGTTACATAAGCTGAATACCTTCCGGATGGTTAAATAAAAAAGAAGTGGAAGTTGATAACATTTTTTTGAAGCAAATGTTCCTTGGAAAATGATTTAATGTTCTGCAATTTTTTTGTTTCTGAGTTGTTCTGTGAAAACCTCGGCAACTATAAATTCAGTTTGAATTGTCGTCTGCTAATTTTGGAATGTTCCAGAACAATCCCAGTTATTTTTCAGATATTGGGTTGTGGTCTTTTCCACTAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTGTTACATAAGCTGAATACCTTCCGGATGGTTAAATAAAAAAGAAGTGGAAGTTGATAACATTTTTTTGAAGCAAATGTTCCTTGGAAAATGATTTAATGTTCTGCAATTTTTTTGTTTCTGAGTTGTTCTGTGAAAACCTCGGCAACTATAAATTCAGTTTSAATTGTCGTCTGCTAATTTTGGAATGTTCCAGAACAATCCCAGTTATTTTTCAGATATTGGGTTGTGGTCTTTTCCACTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19280</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>168519</contig_pos>
        <strand>+</strand>
        <context>TTCCTTGGAA[A/G]ATGATTTAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAGAAGTGGAAGTTGATAACATTTTTTTGAAGCAAATGTTCCTTGGAA</left_flank>
        <right_flank>ATGATTTAATGTTCTGCAATTTTTTTGTTTCTGAGTTGTTCTGTGAAAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCGCATGTCTGCTCCTAGGAACTCTATTCGTTCCAATCAAATCATGTCCACCAACCGATGGATTTGCAACACAGTTGTTCATGTGTTTGGGTAGTTATACCACAAGTTTCGGCGTTTATGCGTACATGGAATTTCCGGGAATCTATAGTTTCGCAATGATTGGTGGAGCAGTTTGGTCAGCGAGTGAGTTTGACAGATTTTAATATCTCATTGTGAGGTTAGGACTGAAGATAATGAATCAATTTGAAGCATTTGATTACCGAATGTCCCTTAACTTTCAACTTCGAGCCAATTTATCTCGATTTCGATACATATGAAAGTTGTCAAAAAGTGGTCAAGTGACCAGATATTCCTGATGTCATGATTAAAATTTTGTCAGTTGATAACTTTTTGGTATCTCTAAGTGTATCTGTTACATAAGCTGAATACCTTCCGGATGGTTAAATAAAAAAGAAGTGGAAGTTGATAACATTTTTTTGAAGCAAATGTTCCTTGGAAAATGATTTAATGTTCTGCAATTTTTTTGTTTCTGAGTTGTTCTGTGAAAACCTCGGCAACTATAAATTCAGTTTGAATTGTCGTCTGCTAATTTTGGAATGTTCCAGAACAATCCCAGTTATTTTTCAGATATTGGGTTGTGGTCTTTTCCACTAAAAATCATTATTTTTTAAATACCGTAATCACTAAAATGAAAGTTTACCCAAACTGTCAACTTTGAGCCAATTTATCTCGGTTCCTTCGAAAGATACCAAAAAGTGATAAACTGACAAAATATTTTTCAAACTATGATAAACATTTTATCAATTGACAAAGTTTTAATATCTTTTTAAAGAGCCGAGTTAATTGAGCGCAAAGTTAACAGTTCGGGTGGGCTTCTATCAGAGGAAGTACGGTACTTCTTTTCCACCAAATAATCTGAAAATTTGTAACGTTTTCTCCAGCTAACTGCTTCGCTGTCTCAATCATGACTCATGTCGGAATGGCGATGTTCATGCTGTT</canonical>
            <polymorphic>GGCGCATGTCTGCTCCTAGGAACTCTATTCGTTCCAATCAAATCATGTCCACCAACCGATGGATTTGCAACACAGTTGTTCATGTGTTTGGGTAGTTATACCACAAGTTTCGGCGTTTATGCGTACATGGAATTTCCGGGAATCTATAGTTTCGCAATGATTGGTGGAGCAGTTTGGTCAGCGAGTGAGTTTGACAGATTTTAATATCTCATTGTGAGGTTAGGACTGAAGATAATGAATCAATTTGAAGCATTTGATTACCGAATGTCCCTTAACTTTCAACTTCGAGCCAATTTATCTCGATTTCGATACATATGAAAGTTGTCAAAAAGTGGTCAAGTGACCAGATATTCCTGATGTCATGATTAAAATTTTGTCAGTTGATAACTTTTTGGTATCTCTAAGTGTATCTGTTACATAAGCTGAATACCTTCCGGATGGTTAAATAAAAAAGAAGTGGAAGTTGATAACATTTTTTTGAAGCAAATGTTCCTTGGAARATGATTTAATGTTCTGCAATTTTTTTGTTTCTGAGTTGTTCTGTGAAAACCTCGGCAACTATAAATTCAGTTTGAATTGTCGTCTGCTAATTTTGGAATGTTCCAGAACAATCCCAGTTATTTTTCAGATATTGGGTTGTGGTCTTTTCCACTAAAAATCATTATTTTTTAAATACCGTAATCACTAAAATGAAAGTTTACCCAAACTGTCAACTTTGAGCCAATTTATCTCGGTTCCTTCGAAAGATACCAAAAAGTGATAAACTGACAAAATATTTTTCAAACTATGATAAACATTTTATCAATTGACAAAGTTTTAATATCTTTTTAAAGAGCCGAGTTAATTGAGCGCAAAGTTAACAGTTCGGGTGGGCTTCTATCAGAGGAAGTACGGTACTTCTTTTCCACCAAATAATCTGAAAATTTGTAACGTTTTCTCCAGCTAACTGCTTCGCTGTCTCAATCATGACTCATGTCGGAATGGCGATGTTCATGCTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGTTACATAAGCTGAATACCTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTAGTGGAAAAGACCACAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTGTTACATAAGCTGAATACCTTCCGGATGGTTAAATAAAAAAGAAGTGGAAGTTGATAACATTTTTTTGAAGCAAATGTTCCTTGGAAAATGATTTAATGTTCTGCAATTTTTTTGTTTCTGAGTTGTTCTGTGAAAACCTCGGCAACTATAAATTCAGTTTGAATTGTCGTCTGCTAATTTTGGAATGTTCCAGAACAATCCCAGTTATTTTTCAGATATTGGGTTGTGGTCTTTTCCACTAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTGTTACATAAGCTGAATACCTTCCGGATGGTTAAATAAAAAAGAAGTGGAAGTTGATAACATTTTTTTGAAGCAAATGTTCCTTGGAARATGATTTAATGTTCTGCAATTTTTTTGTTTCTGAGTTGTTCTGTGAAAACCTCGGCAACTATAAATTCAGTTTGAATTGTCGTCTGCTAATTTTGGAATGTTCCAGAACAATCCCAGTTATTTTTCAGATATTGGGTTGTGGTCTTTTCCACTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19281</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>178306</contig_pos>
        <strand>+</strand>
        <context>GCAAATCTTG[C/G]CGTATATTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGGTTTAGAGAAAGGAAACGAACAGAAGATTGGAAAGGAAGCAAATCTTG</left_flank>
        <right_flank>CGTATATTCTCAATGGCAGTTCGAAACTTTTGACGGTCTCCAAATGAGGA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGCTATATTATTAAAAATCAGGAATAGAAGAACAGATCCTAATTTCATTCCATGGATTTCCTTCCATCACACCGATATATTCTTTCCAAACATTAGCCAATAAAAAAAAACTAAAAACTCACCATATCATCTTCAGCAGTAAGACTTCCGAACACCGACTTTTGCATTGGATCCTCAACAGAAGTACCGTAGTCATCGAGACTCTCATGGTCGACCTTCTCGAATCCACTGGAATCAATAGATCCCTCAGCGGATGGACGATCCTCTTGTTGCTGCTGCTGTTGGAGCTTCTCCAGATATTGAGCAGTATTCTCAAACCCGACTGGCGGAGCGTTTGGCGACAAATCGGATGGAGAATCCATTGATAAATTGGTGACTAAAAGTTCTTTGACAGATGGATCGAGGAATTGGGAAACCTGAAATTTTAGGAATTGAAAACCAGAGAAAGAGGTTTAGAGAAAGGAAACGAACAGAAGATTGGAAAGGAAGCAAATCTTGGCGTATATTCTCAATGGCAGTTCGAAACTTTTGACGGTCTCCAAATGAGGAGATTGAGGAGAAAGAGTCGCGACGGATAGATGGATCGTCGACTGGAATTTAGATGAGAAAGGGATGTGAGAAAGAACGAAAAAAATGAAGAAGCACGGCAGAACAATTTTCAAGATGATGAAAAAAAAAAGAAATTCAAGTGTTAAGAAAATGGTTCAGAATGGGAAAGAAAACGAAAAAAAGTTAGAAAGTTATGTGTTAACTTTGAATCACTCATTTAGGTCAATAGTTGTCTTAAATTCAATAATTAAACACTATCGCTTACTGGAAGTATTGAATCTCTGAATGGTTCGTTCACTCAAATCCCCAATCGAATCCAAGCATTCACTTCCATCCTCTTCTTCATTTGCCACGTACTCCATTGATTTTCCAGGACCCAGAATTTTGGTTTCGGCTAGTACAGTATTGATTTTTGCCTCTTCCTTCTCTTCTGAAGGCGTTGCATCAGTA</canonical>
            <polymorphic>AGGCTATATTATTAAAAATCAGGAATAGAAGAACAGATCCTAATTTCATTCCATGGATTTCCTTCCATCACACCGATATATTCTTTCCAAACATTAGCCAATAAAAAAAAACTAAAAACTCACCATATCATCTTCAGCAGTAAGACTTCCGAACACCGACTTTTGCATTGGATCCTCAACAGAAGTACCGTAGTCATCGAGACTCTCATGGTCGACCTTCTCGAATCCACTGGAATCAATAGATCCCTCAGCGGATGGACGATCCTCTTGTTGCTGCTGCTGTTGGAGCTTCTCCAGATATTGAGCAGTATTCTCAAACCCGACTGGCGGAGCGTTTGGCGACAAATCGGATGGAGAATCCATTGATAAATTGGTGACTAAAAGTTCTTTGACAGATGGATCGAGGAATTGGGAAACCTGAAATTTTAGGAATTGAAAACCAGAGAAAGAGGTTTAGAGAAAGGAAACGAACAGAAGATTGGAAAGGAAGCAAATCTTGSCGTATATTCTCAATGGCAGTTCGAAACTTTTGACGGTCTCCAAATGAGGAGATTGAGGAGAAAGAGTCGCGACGGATAGATGGATCGTCGACTGGAATTTAGATGAGAAAGGGATGTGAGAAAGAACGAAAAAAATGAAGAAGCACGGCAGAACAATTTTCAAGATGATGAAAAAAAAAAGAAATTCAAGTGTTAAGAAAATGGTTCAGAATGGGAAAGAAAACGAAAAAAAGTTAGAAAGTTATGTGTTAACTTTGAATCACTCATTTAGGTCAATAGTTGTCTTAAATTCAATAATTAAACACTATCGCTTACTGGAAGTATTGAATCTCTGAATGGTTCGTTCACTCAAATCCCCAATCGAATCCAAGCATTCACTTCCATCCTCTTCTTCATTTGCCACGTACTCCATTGATTTTCCAGGACCCAGAATTTTGGTTTCGGCTAGTACAGTATTGATTTTTGCCTCTTCCTTCTCTTCTGAAGGCGTTGCATCAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTTAGGAATTGAAAACCAG</pcr_primer_p1>
		<pcr_primer_p2>CATCATCTTGAAAATTGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTTTAGGAATTGAAAACCAGAGAAAGAGGTTTAGAGAAAGGAAACGAACAGAAGATTGGAAAGGAAGCAAATCTTGGCGTATATTCTCAATGGCAGTTCGAAACTTTTGACGGTCTCCAAATGAGGAGATTGAGGAGAAAGAGTCGCGACGGATAGATGGATCGTCGACTGGAATTTAGATGAGAAAGGGATGTGAGAAAGAACGAAAAAAATGAAGAAGCACGGCAGAACAATTTTCAAGATGATG</canonical_amplicon>
		<polymorphic_amplicon>AAATTTTAGGAATTGAAAACCAGAGAAAGAGGTTTAGAGAAAGGAAACGAACAGAAGATTGGAAAGGAAGCAAATCTTGSCGTATATTCTCAATGGCAGTTCGAAACTTTTGACGGTCTCCAAATGAGGAGATTGAGGAGAAAGAGTCGCGACGGATAGATGGATCGTCGACTGGAATTTAGATGAGAAAGGGATGTGAGAAAGAACGAAAAAAATGAAGAAGCACGGCAGAACAATTTTCAAGATGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19282</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>178348</contig_pos>
        <strand>+</strand>
        <context>GACGGTCTCC[A/G]AATGAGGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATCTTGGCGTATATTCTCAATGGCAGTTCGAAACTTTTGACGGTCTCC</left_flank>
        <right_flank>AATGAGGAGATTGAGGAGAAAGAGTCGCGACGGATAGATGGATCGTCGAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCATTCCATGGATTTCCTTCCATCACACCGATATATTCTTTCCAAACATTAGCCAATAAAAAAAAACTAAAAACTCACCATATCATCTTCAGCAGTAAGACTTCCGAACACCGACTTTTGCATTGGATCCTCAACAGAAGTACCGTAGTCATCGAGACTCTCATGGTCGACCTTCTCGAATCCACTGGAATCAATAGATCCCTCAGCGGATGGACGATCCTCTTGTTGCTGCTGCTGTTGGAGCTTCTCCAGATATTGAGCAGTATTCTCAAACCCGACTGGCGGAGCGTTTGGCGACAAATCGGATGGAGAATCCATTGATAAATTGGTGACTAAAAGTTCTTTGACAGATGGATCGAGGAATTGGGAAACCTGAAATTTTAGGAATTGAAAACCAGAGAAAGAGGTTTAGAGAAAGGAAACGAACAGAAGATTGGAAAGGAAGCAAATCTTGGCGTATATTCTCAATGGCAGTTCGAAACTTTTGACGGTCTCCAAATGAGGAGATTGAGGAGAAAGAGTCGCGACGGATAGATGGATCGTCGACTGGAATTTAGATGAGAAAGGGATGTGAGAAAGAACGAAAAAAATGAAGAAGCACGGCAGAACAATTTTCAAGATGATGAAAAAAAAAAGAAATTCAAGTGTTAAGAAAATGGTTCAGAATGGGAAAGAAAACGAAAAAAAGTTAGAAAGTTATGTGTTAACTTTGAATCACTCATTTAGGTCAATAGTTGTCTTAAATTCAATAATTAAACACTATCGCTTACTGGAAGTATTGAATCTCTGAATGGTTCGTTCACTCAAATCCCCAATCGAATCCAAGCATTCACTTCCATCCTCTTCTTCATTTGCCACGTACTCCATTGATTTTCCAGGACCCAGAATTTTGGTTTCGGCTAGTACAGTATTGATTTTTGCCTCTTCCTTCTCTTCTGAAGGCGTTGCATCAGTAGTCACGGTAACCACATGGACAGTGTCGTCTTGCTTCTCCTGG</canonical>
            <polymorphic>ATTTCATTCCATGGATTTCCTTCCATCACACCGATATATTCTTTCCAAACATTAGCCAATAAAAAAAAACTAAAAACTCACCATATCATCTTCAGCAGTAAGACTTCCGAACACCGACTTTTGCATTGGATCCTCAACAGAAGTACCGTAGTCATCGAGACTCTCATGGTCGACCTTCTCGAATCCACTGGAATCAATAGATCCCTCAGCGGATGGACGATCCTCTTGTTGCTGCTGCTGTTGGAGCTTCTCCAGATATTGAGCAGTATTCTCAAACCCGACTGGCGGAGCGTTTGGCGACAAATCGGATGGAGAATCCATTGATAAATTGGTGACTAAAAGTTCTTTGACAGATGGATCGAGGAATTGGGAAACCTGAAATTTTAGGAATTGAAAACCAGAGAAAGAGGTTTAGAGAAAGGAAACGAACAGAAGATTGGAAAGGAAGCAAATCTTGGCGTATATTCTCAATGGCAGTTCGAAACTTTTGACGGTCTCCRAATGAGGAGATTGAGGAGAAAGAGTCGCGACGGATAGATGGATCGTCGACTGGAATTTAGATGAGAAAGGGATGTGAGAAAGAACGAAAAAAATGAAGAAGCACGGCAGAACAATTTTCAAGATGATGAAAAAAAAAAGAAATTCAAGTGTTAAGAAAATGGTTCAGAATGGGAAAGAAAACGAAAAAAAGTTAGAAAGTTATGTGTTAACTTTGAATCACTCATTTAGGTCAATAGTTGTCTTAAATTCAATAATTAAACACTATCGCTTACTGGAAGTATTGAATCTCTGAATGGTTCGTTCACTCAAATCCCCAATCGAATCCAAGCATTCACTTCCATCCTCTTCTTCATTTGCCACGTACTCCATTGATTTTCCAGGACCCAGAATTTTGGTTTCGGCTAGTACAGTATTGATTTTTGCCTCTTCCTTCTCTTCTGAAGGCGTTGCATCAGTAGTCACGGTAACCACATGGACAGTGTCGTCTTGCTTCTCCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTTAGGAATTGAAAACCAG</pcr_primer_p1>
		<pcr_primer_p2>CATCATCTTGAAAATTGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTTTAGGAATTGAAAACCAGAGAAAGAGGTTTAGAGAAAGGAAACGAACAGAAGATTGGAAAGGAAGCAAATCTTGGCGTATATTCTCAATGGCAGTTCGAAACTTTTGACGGTCTCCAAATGAGGAGATTGAGGAGAAAGAGTCGCGACGGATAGATGGATCGTCGACTGGAATTTAGATGAGAAAGGGATGTGAGAAAGAACGAAAAAAATGAAGAAGCACGGCAGAACAATTTTCAAGATGATG</canonical_amplicon>
		<polymorphic_amplicon>AAATTTTAGGAATTGAAAACCAGAGAAAGAGGTTTAGAGAAAGGAAACGAACAGAAGATTGGAAAGGAAGCAAATCTTGGCGTATATTCTCAATGGCAGTTCGAAACTTTTGACGGTCTCCRAATGAGGAGATTGAGGAGAAAGAGTCGCGACGGATAGATGGATCGTCGACTGGAATTTAGATGAGAAAGGGATGTGAGAAAGAACGAAAAAAATGAAGAAGCACGGCAGAACAATTTTCAAGATGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19283</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>178423</contig_pos>
        <strand>+</strand>
        <context>GAAAGGGATG[A/T]GAGAAAGAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGCGACGGATAGATGGATCGTCGACTGGAATTTAGATGAGAAAGGGATG</left_flank>
        <right_flank>GAGAAAGAACGAAAAAAATGAAGAAGCACGGCAGAACAATTTTCAAGATG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCACCATATCATCTTCAGCAGTAAGACTTCCGAACACCGACTTTTGCATTGGATCCTCAACAGAAGTACCGTAGTCATCGAGACTCTCATGGTCGACCTTCTCGAATCCACTGGAATCAATAGATCCCTCAGCGGATGGACGATCCTCTTGTTGCTGCTGCTGTTGGAGCTTCTCCAGATATTGAGCAGTATTCTCAAACCCGACTGGCGGAGCGTTTGGCGACAAATCGGATGGAGAATCCATTGATAAATTGGTGACTAAAAGTTCTTTGACAGATGGATCGAGGAATTGGGAAACCTGAAATTTTAGGAATTGAAAACCAGAGAAAGAGGTTTAGAGAAAGGAAACGAACAGAAGATTGGAAAGGAAGCAAATCTTGGCGTATATTCTCAATGGCAGTTCGAAACTTTTGACGGTCTCCAAATGAGGAGATTGAGGAGAAAGAGTCGCGACGGATAGATGGATCGTCGACTGGAATTTAGATGAGAAAGGGATGTGAGAAAGAACGAAAAAAATGAAGAAGCACGGCAGAACAATTTTCAAGATGATGAAAAAAAAAAGAAATTCAAGTGTTAAGAAAATGGTTCAGAATGGGAAAGAAAACGAAAAAAAGTTAGAAAGTTATGTGTTAACTTTGAATCACTCATTTAGGTCAATAGTTGTCTTAAATTCAATAATTAAACACTATCGCTTACTGGAAGTATTGAATCTCTGAATGGTTCGTTCACTCAAATCCCCAATCGAATCCAAGCATTCACTTCCATCCTCTTCTTCATTTGCCACGTACTCCATTGATTTTCCAGGACCCAGAATTTTGGTTTCGGCTAGTACAGTATTGATTTTTGCCTCTTCCTTCTCTTCTGAAGGCGTTGCATCAGTAGTCACGGTAACCACATGGACAGTGTCGTCTTGCTTCTCCTGGGGAGAATGTGGAACCGATTGCATATCCATCATCGGAACATGCTCGTATTCCTCAAGAGTGTTCGGGGAAAGAGGT</canonical>
            <polymorphic>ACTCACCATATCATCTTCAGCAGTAAGACTTCCGAACACCGACTTTTGCATTGGATCCTCAACAGAAGTACCGTAGTCATCGAGACTCTCATGGTCGACCTTCTCGAATCCACTGGAATCAATAGATCCCTCAGCGGATGGACGATCCTCTTGTTGCTGCTGCTGTTGGAGCTTCTCCAGATATTGAGCAGTATTCTCAAACCCGACTGGCGGAGCGTTTGGCGACAAATCGGATGGAGAATCCATTGATAAATTGGTGACTAAAAGTTCTTTGACAGATGGATCGAGGAATTGGGAAACCTGAAATTTTAGGAATTGAAAACCAGAGAAAGAGGTTTAGAGAAAGGAAACGAACAGAAGATTGGAAAGGAAGCAAATCTTGGCGTATATTCTCAATGGCAGTTCGAAACTTTTGACGGTCTCCAAATGAGGAGATTGAGGAGAAAGAGTCGCGACGGATAGATGGATCGTCGACTGGAATTTAGATGAGAAAGGGATGWGAGAAAGAACGAAAAAAATGAAGAAGCACGGCAGAACAATTTTCAAGATGATGAAAAAAAAAAGAAATTCAAGTGTTAAGAAAATGGTTCAGAATGGGAAAGAAAACGAAAAAAAGTTAGAAAGTTATGTGTTAACTTTGAATCACTCATTTAGGTCAATAGTTGTCTTAAATTCAATAATTAAACACTATCGCTTACTGGAAGTATTGAATCTCTGAATGGTTCGTTCACTCAAATCCCCAATCGAATCCAAGCATTCACTTCCATCCTCTTCTTCATTTGCCACGTACTCCATTGATTTTCCAGGACCCAGAATTTTGGTTTCGGCTAGTACAGTATTGATTTTTGCCTCTTCCTTCTCTTCTGAAGGCGTTGCATCAGTAGTCACGGTAACCACATGGACAGTGTCGTCTTGCTTCTCCTGGGGAGAATGTGGAACCGATTGCATATCCATCATCGGAACATGCTCGTATTCCTCAAGAGTGTTCGGGGAAAGAGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>242 147 102 74 56 50 47 43 42 33 30 28 27 25 15 14 11 9 5</canonical_bands>
                <polymorphic_bands>269 147 102 74 56 50 47 43 42 33 30 28 25 15 14 11 9 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTTTAGGAATTGAAAACCAG</pcr_primer_p1>
		<pcr_primer_p2>CATCATCTTGAAAATTGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTTTAGGAATTGAAAACCAGAGAAAGAGGTTTAGAGAAAGGAAACGAACAGAAGATTGGAAAGGAAGCAAATCTTGGCGTATATTCTCAATGGCAGTTCGAAACTTTTGACGGTCTCCAAATGAGGAGATTGAGGAGAAAGAGTCGCGACGGATAGATGGATCGTCGACTGGAATTTAGATGAGAAAGGGATGTGAGAAAGAACGAAAAAAATGAAGAAGCACGGCAGAACAATTTTCAAGATGATG</canonical_amplicon>
		<polymorphic_amplicon>AAATTTTAGGAATTGAAAACCAGAGAAAGAGGTTTAGAGAAAGGAAACGAACAGAAGATTGGAAAGGAAGCAAATCTTGGCGTATATTCTCAATGGCAGTTCGAAACTTTTGACGGTCTCCAAATGAGGAGATTGAGGAGAAAGAGTCGCGACGGATAGATGGATCGTCGACTGGAATTTAGATGAGAAAGGGATGWGAGAAAGAACGAAAAAAATGAAGAAGCACGGCAGAACAATTTTCAAGATGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19284</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>182358</contig_pos>
        <strand>+</strand>
        <context>CCACTTCTGG[A/C]GGAAGTTCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACATCTTCTTCCACTGTTTGAGAATCAGTGACAGATTCTTCCACTTCTGG</left_flank>
        <right_flank>GGAAGTTCATTGTACACTACTTCTTCTGGAAGACCATCAGTAGCTACAGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGATTCTGAAGGGGCAGTTTCTGATTCTTGAGTTTCAGCGACGTCTTCTTTTGCATCTGTTGATGGCTCCTCTGTAAGTTCCTTTTCATGAGCTTGGCTTTCAGAATTAATGTGTCCATATGGAATAACACTTTCCATCATGGAAGTTAACTTATCCAGAATACTTGAAGGTTCAGAAGTAGCATTTTCTGATTCTTGATGTGGGCTATCACCGACATCTTTTTTTGCATCAGCCTGTTGAGTTAGTGGTTCCTCTGTCTCTTCCTCTCCTTGGCTTTCAGAATTAACGTGAAGAACGTCTTCAGAAGGGAGGGCAGCGTCAGTAGGAAGAACATTTTCTACAATAGAGACTAGCTTCTCCATAAGACTTTCTTCTGCATATTTTTCATTTGTGGAGGGAGCCTGAGCTGACGTTGAAGGCGGAGTACCTTCATTCGTCTTTTCTTGTACATCTTCTTCCACTGTTTGAGAATCAGTGACAGATTCTTCCACTTCTGGCGGAAGTTCATTGTACACTACTTCTTCTGGAAGACCATCAGTAGCTACAGGAGTTTCCGATGTTACTTCAGAAGTTGGAACGGGATCATCAGCTGCAGTATCAACGACCACAGTTTTGATACCAACAACGTCTTCACTGTTCAGAGCATCATTCAGCTCCTTTTGAATCACTTCAGCAACTTCAGATTCTTGAGTAGTTTCTTCCGATAACAAGATTGGTAGTGAATCAGCCACTTCCTCTTTCTTCAAGTCGAGCATCTCGTCACCAGCATCTTCCAGTCCCACAACAACTTGCTCTAGTTTTGTCGCAACACAGGAAGGGTTTTCAGTTTTCTCGATTTCAGCGACAATGCCTTCAGTAGCAGACAATTCTGTTGTGGTTCCAGCAACATCTTCACTGTTCAACGCGTCTTCAACTTCCGATTGCTTCAATCGAGGAATTTCTGGTGTTTCAACTTCTCCTGACTCTTCGAGAGCTACAACGGGCTGATCTGCTTTCCC</canonical>
            <polymorphic>GAGATTCTGAAGGGGCAGTTTCTGATTCTTGAGTTTCAGCGACGTCTTCTTTTGCATCTGTTGATGGCTCCTCTGTAAGTTCCTTTTCATGAGCTTGGCTTTCAGAATTAATGTGTCCATATGGAATAACACTTTCCATCATGGAAGTTAACTTATCCAGAATACTTGAAGGTTCAGAAGTAGCATTTTCTGATTCTTGATGTGGGCTATCACCGACATCTTTTTTTGCATCAGCCTGTTGAGTTAGTGGTTCCTCTGTCTCTTCCTCTCCTTGGCTTTCAGAATTAACGTGAAGAACGTCTTCAGAAGGGAGGGCAGCGTCAGTAGGAAGAACATTTTCTACAATAGAGACTAGCTTCTCCATAAGACTTTCTTCTGCATATTTTTCATTTGTGGAGGGAGCCTGAGCTGACGTTGAAGGCGGAGTACCTTCATTCGTCTTTTCTTGTACATCTTCTTCCACTGTTTGAGAATCAGTGACAGATTCTTCCACTTCTGGMGGAAGTTCATTGTACACTACTTCTTCTGGAAGACCATCAGTAGCTACAGGAGTTTCCGATGTTACTTCAGAAGTTGGAACGGGATCATCAGCTGCAGTATCAACGACCACAGTTTTGATACCAACAACGTCTTCACTGTTCAGAGCATCATTCAGCTCCTTTTGAATCACTTCAGCAACTTCAGATTCTTGAGTAGTTTCTTCCGATAACAAGATTGGTAGTGAATCAGCCACTTCCTCTTTCTTCAAGTCGAGCATCTCGTCACCAGCATCTTCCAGTCCCACAACAACTTGCTCTAGTTTTGTCGCAACACAGGAAGGGTTTTCAGTTTTCTCGATTTCAGCGACAATGCCTTCAGTAGCAGACAATTCTGTTGTGGTTCCAGCAACATCTTCACTGTTCAACGCGTCTTCAACTTCCGATTGCTTCAATCGAGGAATTTCTGGTGTTTCAACTTCTCCTGACTCTTCGAGAGCTACAACGGGCTGATCTGCTTTCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>502 420 78</canonical_bands>
                <polymorphic_bands>580 420</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTTGTACATCTTCTTCCAC</pcr_primer_p1>
		<pcr_primer_p2>AAGAATCTGAAGTTGCTGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTTGTACATCTTCTTCCACTGTTTGAGAATCAGTGACAGATTCTTCCACTTCTGGCGGAAGTTCATTGTACACTACTTCTTCTGGAAGACCATCAGTAGCTACAGGAGTTTCCGATGTTACTTCAGAAGTTGGAACGGGATCATCAGCTGCAGTATCAACGACCACAGTTTTGATACCAACAACGTCTTCACTGTTCAGAGCATCATTCAGCTCCTTTTGAATCACTTCAGCAACTTCAGATTCTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTTGTACATCTTCTTCCACTGTTTGAGAATCAGTGACAGATTCTTCCACTTCTGGMGGAAGTTCATTGTACACTACTTCTTCTGGAAGACCATCAGTAGCTACAGGAGTTTCCGATGTTACTTCAGAAGTTGGAACGGGATCATCAGCTGCAGTATCAACGACCACAGTTTTGATACCAACAACGTCTTCACTGTTCAGAGCATCATTCAGCTCCTTTTGAATCACTTCAGCAACTTCAGATTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19285</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>182189</contig_pos>
        <strand>+</strand>
        <context>TCAGTAGGAA[G/T]AACATTTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGAATTAACGTGAAGAACGTCTTCAGAAGGGAGGGCAGCGTCAGTAGGAA</left_flank>
        <right_flank>AACATTTTCTACAATAGAGACTAGCTTCTCCATAAGACTTTCTTCTGCAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTTATCCAATATGCTTGAAGGTTCGGCAGTTTCTGATTCTTGCCGTGGAGTGTCAGCGACGTCTTCGGAAAGTTGGCTTGGTGGTCCCTGAGCTTCGCTTTCAGAACCAACGTTCTCAGATGGAATGACACTTTCCATAATTGATGTTAACTTATCCAGGATGCTTAGAGATTCTGAAGGGGCAGTTTCTGATTCTTGAGTTTCAGCGACGTCTTCTTTTGCATCTGTTGATGGCTCCTCTGTAAGTTCCTTTTCATGAGCTTGGCTTTCAGAATTAATGTGTCCATATGGAATAACACTTTCCATCATGGAAGTTAACTTATCCAGAATACTTGAAGGTTCAGAAGTAGCATTTTCTGATTCTTGATGTGGGCTATCACCGACATCTTTTTTTGCATCAGCCTGTTGAGTTAGTGGTTCCTCTGTCTCTTCCTCTCCTTGGCTTTCAGAATTAACGTGAAGAACGTCTTCAGAAGGGAGGGCAGCGTCAGTAGGAAGAACATTTTCTACAATAGAGACTAGCTTCTCCATAAGACTTTCTTCTGCATATTTTTCATTTGTGGAGGGAGCCTGAGCTGACGTTGAAGGCGGAGTACCTTCATTCGTCTTTTCTTGTACATCTTCTTCCACTGTTTGAGAATCAGTGACAGATTCTTCCACTTCTGGCGGAAGTTCATTGTACACTACTTCTTCTGGAAGACCATCAGTAGCTACAGGAGTTTCCGATGTTACTTCAGAAGTTGGAACGGGATCATCAGCTGCAGTATCAACGACCACAGTTTTGATACCAACAACGTCTTCACTGTTCAGAGCATCATTCAGCTCCTTTTGAATCACTTCAGCAACTTCAGATTCTTGAGTAGTTTCTTCCGATAACAAGATTGGTAGTGAATCAGCCACTTCCTCTTTCTTCAAGTCGAGCATCTCGTCACCAGCATCTTCCAGTCCCACAACAACTTGCTCTAGTTTTGTCGCAACACAGGAAGGGTTTTCAGTTT</canonical>
            <polymorphic>AACTTATCCAATATGCTTGAAGGTTCGGCAGTTTCTGATTCTTGCCGTGGAGTGTCAGCGACGTCTTCGGAAAGTTGGCTTGGTGGTCCCTGAGCTTCGCTTTCAGAACCAACGTTCTCAGATGGAATGACACTTTCCATAATTGATGTTAACTTATCCAGGATGCTTAGAGATTCTGAAGGGGCAGTTTCTGATTCTTGAGTTTCAGCGACGTCTTCTTTTGCATCTGTTGATGGCTCCTCTGTAAGTTCCTTTTCATGAGCTTGGCTTTCAGAATTAATGTGTCCATATGGAATAACACTTTCCATCATGGAAGTTAACTTATCCAGAATACTTGAAGGTTCAGAAGTAGCATTTTCTGATTCTTGATGTGGGCTATCACCGACATCTTTTTTTGCATCAGCCTGTTGAGTTAGTGGTTCCTCTGTCTCTTCCTCTCCTTGGCTTTCAGAATTAACGTGAAGAACGTCTTCAGAAGGGAGGGCAGCGTCAGTAGGAAKAACATTTTCTACAATAGAGACTAGCTTCTCCATAAGACTTTCTTCTGCATATTTTTCATTTGTGGAGGGAGCCTGAGCTGACGTTGAAGGCGGAGTACCTTCATTCGTCTTTTCTTGTACATCTTCTTCCACTGTTTGAGAATCAGTGACAGATTCTTCCACTTCTGGCGGAAGTTCATTGTACACTACTTCTTCTGGAAGACCATCAGTAGCTACAGGAGTTTCCGATGTTACTTCAGAAGTTGGAACGGGATCATCAGCTGCAGTATCAACGACCACAGTTTTGATACCAACAACGTCTTCACTGTTCAGAGCATCATTCAGCTCCTTTTGAATCACTTCAGCAACTTCAGATTCTTGAGTAGTTTCTTCCGATAACAAGATTGGTAGTGAATCAGCCACTTCCTCTTTCTTCAAGTCGAGCATCTCGTCACCAGCATCTTCCAGTCCCACAACAACTTGCTCTAGTTTTGTCGCAACACAGGAAGGGTTTTCAGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>468 333 163 36</canonical_bands>
                <polymorphic_bands>468 369 163</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAATACTTGAAGGTTCAGAAG</pcr_primer_p1>
		<pcr_primer_p2>ACAAATGAAAAATATGCAGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CAGAATACTTGAAGGTTCAGAAGTAGCATTTTCTGATTCTTGATGTGGGCTATCACCGACATCTTTTTTTGCATCAGCCTGTTGAGTTAGTGGTTCCTCTGTCTCTTCCTCTCCTTGGCTTTCAGAATTAACGTGAAGAACGTCTTCAGAAGGGAGGGCAGCGTCAGTAGGAAGAACATTTTCTACAATAGAGACTAGCTTCTCCATAAGACTTTCTTCTGCATATTTTTCATTTGT</canonical_amplicon>
		<polymorphic_amplicon>CAGAATACTTGAAGGTTCAGAAGTAGCATTTTCTGATTCTTGATGTGGGCTATCACCGACATCTTTTTTTGCATCAGCCTGTTGAGTTAGTGGTTCCTCTGTCTCTTCCTCTCCTTGGCTTTCAGAATTAACGTGAAGAACGTCTTCAGAAGGGAGGGCAGCGTCAGTAGGAAKAACATTTTCTACAATAGAGACTAGCTTCTCCATAAGACTTTCTTCTGCATATTTTTCATTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19286</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>182104</contig_pos>
        <strand>+</strand>
        <context>CTGTTGAGTT[A/G]GTGGTTCCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTGATGTGGGCTATCACCGACATCTTTTTTTGCATCAGCCTGTTGAGTT</left_flank>
        <right_flank>GTGGTTCCTCTGTCTCTTCCTCTCCTTGGCTTTCAGAATTAACGTGAAGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAATTCCGAAGTTCTTCATACTGATTGACATATTCAGATAAAATCACGGAATCGACTGGAAGAACACTTTCCACCATAGAAGTCAACTTATCCAATATGCTTGAAGGTTCGGCAGTTTCTGATTCTTGCCGTGGAGTGTCAGCGACGTCTTCGGAAAGTTGGCTTGGTGGTCCCTGAGCTTCGCTTTCAGAACCAACGTTCTCAGATGGAATGACACTTTCCATAATTGATGTTAACTTATCCAGGATGCTTAGAGATTCTGAAGGGGCAGTTTCTGATTCTTGAGTTTCAGCGACGTCTTCTTTTGCATCTGTTGATGGCTCCTCTGTAAGTTCCTTTTCATGAGCTTGGCTTTCAGAATTAATGTGTCCATATGGAATAACACTTTCCATCATGGAAGTTAACTTATCCAGAATACTTGAAGGTTCAGAAGTAGCATTTTCTGATTCTTGATGTGGGCTATCACCGACATCTTTTTTTGCATCAGCCTGTTGAGTTAGTGGTTCCTCTGTCTCTTCCTCTCCTTGGCTTTCAGAATTAACGTGAAGAACGTCTTCAGAAGGGAGGGCAGCGTCAGTAGGAAGAACATTTTCTACAATAGAGACTAGCTTCTCCATAAGACTTTCTTCTGCATATTTTTCATTTGTGGAGGGAGCCTGAGCTGACGTTGAAGGCGGAGTACCTTCATTCGTCTTTTCTTGTACATCTTCTTCCACTGTTTGAGAATCAGTGACAGATTCTTCCACTTCTGGCGGAAGTTCATTGTACACTACTTCTTCTGGAAGACCATCAGTAGCTACAGGAGTTTCCGATGTTACTTCAGAAGTTGGAACGGGATCATCAGCTGCAGTATCAACGACCACAGTTTTGATACCAACAACGTCTTCACTGTTCAGAGCATCATTCAGCTCCTTTTGAATCACTTCAGCAACTTCAGATTCTTGAGTAGTTTCTTCCGATAACAAGATTGGTAGTGAATCAGCCACTTCCTCTTTCTTC</canonical>
            <polymorphic>TGAATTCCGAAGTTCTTCATACTGATTGACATATTCAGATAAAATCACGGAATCGACTGGAAGAACACTTTCCACCATAGAAGTCAACTTATCCAATATGCTTGAAGGTTCGGCAGTTTCTGATTCTTGCCGTGGAGTGTCAGCGACGTCTTCGGAAAGTTGGCTTGGTGGTCCCTGAGCTTCGCTTTCAGAACCAACGTTCTCAGATGGAATGACACTTTCCATAATTGATGTTAACTTATCCAGGATGCTTAGAGATTCTGAAGGGGCAGTTTCTGATTCTTGAGTTTCAGCGACGTCTTCTTTTGCATCTGTTGATGGCTCCTCTGTAAGTTCCTTTTCATGAGCTTGGCTTTCAGAATTAATGTGTCCATATGGAATAACACTTTCCATCATGGAAGTTAACTTATCCAGAATACTTGAAGGTTCAGAAGTAGCATTTTCTGATTCTTGATGTGGGCTATCACCGACATCTTTTTTTGCATCAGCCTGTTGAGTTRGTGGTTCCTCTGTCTCTTCCTCTCCTTGGCTTTCAGAATTAACGTGAAGAACGTCTTCAGAAGGGAGGGCAGCGTCAGTAGGAAGAACATTTTCTACAATAGAGACTAGCTTCTCCATAAGACTTTCTTCTGCATATTTTTCATTTGTGGAGGGAGCCTGAGCTGACGTTGAAGGCGGAGTACCTTCATTCGTCTTTTCTTGTACATCTTCTTCCACTGTTTGAGAATCAGTGACAGATTCTTCCACTTCTGGCGGAAGTTCATTGTACACTACTTCTTCTGGAAGACCATCAGTAGCTACAGGAGTTTCCGATGTTACTTCAGAAGTTGGAACGGGATCATCAGCTGCAGTATCAACGACCACAGTTTTGATACCAACAACGTCTTCACTGTTCAGAGCATCATTCAGCTCCTTTTGAATCACTTCAGCAACTTCAGATTCTTGAGTAGTTTCTTCCGATAACAAGATTGGTAGTGAATCAGCCACTTCCTCTTTCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGGAATAACACTTTCCATCAT</pcr_primer_p1>
		<pcr_primer_p2>TTATGGAGAAGCTAGTCTCTATTGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TATGGAATAACACTTTCCATCATGGAAGTTAACTTATCCAGAATACTTGAAGGTTCAGAAGTAGCATTTTCTGATTCTTGATGTGGGCTATCACCGACATCTTTTTTTGCATCAGCCTGTTGAGTTAGTGGTTCCTCTGTCTCTTCCTCTCCTTGGCTTTCAGAATTAACGTGAAGAACGTCTTCAGAAGGGAGGGCAGCGTCAGTAGGAAGAACATTTTCTACAATAGAGACTAGCTTCTCCATAA</canonical_amplicon>
		<polymorphic_amplicon>TATGGAATAACACTTTCCATCATGGAAGTTAACTTATCCAGAATACTTGAAGGTTCAGAAGTAGCATTTTCTGATTCTTGATGTGGGCTATCACCGACATCTTTTTTTGCATCAGCCTGTTGAGTTRGTGGTTCCTCTGTCTCTTCCTCTCCTTGGCTTTCAGAATTAACGTGAAGAACGTCTTCAGAAGGGAGGGCAGCGTCAGTAGGAAGAACATTTTCTACAATAGAGACTAGCTTCTCCATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19287</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>182067</contig_pos>
        <strand>+</strand>
        <context>GATGTGGRCT[A/G]TCACCGACAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAATACTTGAAGGTTCAGAAGTAGCATTTTCTGATTCTTGATGTGGGCT</left_flank>
        <right_flank>TCACCGACATCTTTTTTTGCATCAGCCTGTTGAGTTAGTGGTTCCTCTGT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGATTCTTCTTCAGTTGGAAGGTCCTGGAAGCTCTTTGAATTCCGAAGTTCTTCATACTGATTGACATATTCAGATAAAATCACGGAATCGACTGGAAGAACACTTTCCACCATAGAAGTCAACTTATCCAATATGCTTGAAGGTTCGGCAGTTTCTGATTCTTGCCGTGGAGTGTCAGCGACGTCTTCGGAAAGTTGGCTTGGTGGTCCCTGAGCTTCGCTTTCAGAACCAACGTTCTCAGATGGAATGACACTTTCCATAATTGATGTTAACTTATCCAGGATGCTTAGAGATTCTGAAGGGGCAGTTTCTGATTCTTGAGTTTCAGCGACGTCTTCTTTTGCATCTGTTGATGGCTCCTCTGTAAGTTCCTTTTCATGAGCTTGGCTTTCAGAATTAATGTGTCCATATGGAATAACACTTTCCATCATGGAAGTTAACTTATCCAGAATACTTGAAGGTTCAGAAGTAGCATTTTCTGATTCTTGATGTGGGCTATCACCGACATCTTTTTTTGCATCAGCCTGTTGAGTTAGTGGTTCCTCTGTCTCTTCCTCTCCTTGGCTTTCAGAATTAACGTGAAGAACGTCTTCAGAAGGGAGGGCAGCGTCAGTAGGAAGAACATTTTCTACAATAGAGACTAGCTTCTCCATAAGACTTTCTTCTGCATATTTTTCATTTGTGGAGGGAGCCTGAGCTGACGTTGAAGGCGGAGTACCTTCATTCGTCTTTTCTTGTACATCTTCTTCCACTGTTTGAGAATCAGTGACAGATTCTTCCACTTCTGGCGGAAGTTCATTGTACACTACTTCTTCTGGAAGACCATCAGTAGCTACAGGAGTTTCCGATGTTACTTCAGAAGTTGGAACGGGATCATCAGCTGCAGTATCAACGACCACAGTTTTGATACCAACAACGTCTTCACTGTTCAGAGCATCATTCAGCTCCTTTTGAATCACTTCAGCAACTTCAGATTCTTGAGTAGTTTCTTCCGATAA</canonical>
            <polymorphic>CTGATTCTTCTTCAGTTGGAAGGTCCTGGAAGCTCTTTGAATTCCGAAGTTCTTCATACTGATTGACATATTCAGATAAAATCACGGAATCGACTGGAAGAACACTTTCCACCATAGAAGTCAACTTATCCAATATGCTTGAAGGTTCGGCAGTTTCTGATTCTTGCCGTGGAGTGTCAGCGACGTCTTCGGAAAGTTGGCTTGGTGGTCCCTGAGCTTCGCTTTCAGAACCAACGTTCTCAGATGGAATGACACTTTCCATAATTGATGTTAACTTATCCAGGATGCTTAGAGATTCTGAAGGGGCAGTTTCTGATTCTTGAGTTTCAGCGACGTCTTCTTTTGCATCTGTTGATGGCTCCTCTGTAAGTTCCTTTTCATGAGCTTGGCTTTCAGAATTAATGTGTCCATATGGAATAACACTTTCCATCATGGAAGTTAACTTATCCAGAATACTTGAAGGTTCAGAAGTAGCATTTTCTGATTCTTGATGTGGGCTRTCACCGACATCTTTTTTTGCATCAGCCTGTTGAGTTAGTGGTTCCTCTGTCTCTTCCTCTCCTTGGCTTTCAGAATTAACGTGAAGAACGTCTTCAGAAGGGAGGGCAGCGTCAGTAGGAAGAACATTTTCTACAATAGAGACTAGCTTCTCCATAAGACTTTCTTCTGCATATTTTTCATTTGTGGAGGGAGCCTGAGCTGACGTTGAAGGCGGAGTACCTTCATTCGTCTTTTCTTGTACATCTTCTTCCACTGTTTGAGAATCAGTGACAGATTCTTCCACTTCTGGCGGAAGTTCATTGTACACTACTTCTTCTGGAAGACCATCAGTAGCTACAGGAGTTTCCGATGTTACTTCAGAAGTTGGAACGGGATCATCAGCTGCAGTATCAACGACCACAGTTTTGATACCAACAACGTCTTCACTGTTCAGAGCATCATTCAGCTCCTTTTGAATCACTTCAGCAACTTCAGATTCTTGAGTAGTTTCTTCCGATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGGAATAACACTTTCCATCAT</pcr_primer_p1>
		<pcr_primer_p2>TTATGGAGAAGCTAGTCTCTATTGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TATGGAATAACACTTTCCATCATGGAAGTTAACTTATCCAGAATACTTGAAGGTTCAGAAGTAGCATTTTCTGATTCTTGATGTGGGCTATCACCGACATCTTTTTTTGCATCAGCCTGTTGAGTTAGTGGTTCCTCTGTCTCTTCCTCTCCTTGGCTTTCAGAATTAACGTGAAGAACGTCTTCAGAAGGGAGGGCAGCGTCAGTAGGAAGAACATTTTCTACAATAGAGACTAGCTTCTCCATAA</canonical_amplicon>
		<polymorphic_amplicon>TATGGAATAACACTTTCCATCATGGAAGTTAACTTATCCAGAATACTTGAAGGTTCAGAAGTAGCATTTTCTGATTCTTGATGTGGGCTRTCACCGACATCTTTTTTTGCATCAGCCTGTTGAGTTAGTGGTTCCTCTGTCTCTTCCTCTCCTTGGCTTTCAGAATTAACGTGAAGAACGTCTTCAGAAGGGAGGGCAGCGTCAGTAGGAAGAACATTTTCTACAATAGAGACTAGCTTCTCCATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19288</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>182064</contig_pos>
        <strand>+</strand>
        <context>CTTGATGTGG[A/G]CTRTCACCGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCAGAATACTTGAAGGTTCAGAAGTAGCATTTTCTGATTCTTGATGTGG</left_flank>
        <right_flank>CTATCACCGACATCTTTTTTTGCATCAGCCTGTTGAGTTAGTGGTTCCTC</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATCTGATTCTTCTTCAGTTGGAAGGTCCTGGAAGCTCTTTGAATTCCGAAGTTCTTCATACTGATTGACATATTCAGATAAAATCACGGAATCGACTGGAAGAACACTTTCCACCATAGAAGTCAACTTATCCAATATGCTTGAAGGTTCGGCAGTTTCTGATTCTTGCCGTGGAGTGTCAGCGACGTCTTCGGAAAGTTGGCTTGGTGGTCCCTGAGCTTCGCTTTCAGAACCAACGTTCTCAGATGGAATGACACTTTCCATAATTGATGTTAACTTATCCAGGATGCTTAGAGATTCTGAAGGGGCAGTTTCTGATTCTTGAGTTTCAGCGACGTCTTCTTTTGCATCTGTTGATGGCTCCTCTGTAAGTTCCTTTTCATGAGCTTGGCTTTCAGAATTAATGTGTCCATATGGAATAACACTTTCCATCATGGAAGTTAACTTATCCAGAATACTTGAAGGTTCAGAAGTAGCATTTTCTGATTCTTGATGTGGGCTATCACCGACATCTTTTTTTGCATCAGCCTGTTGAGTTAGTGGTTCCTCTGTCTCTTCCTCTCCTTGGCTTTCAGAATTAACGTGAAGAACGTCTTCAGAAGGGAGGGCAGCGTCAGTAGGAAGAACATTTTCTACAATAGAGACTAGCTTCTCCATAAGACTTTCTTCTGCATATTTTTCATTTGTGGAGGGAGCCTGAGCTGACGTTGAAGGCGGAGTACCTTCATTCGTCTTTTCTTGTACATCTTCTTCCACTGTTTGAGAATCAGTGACAGATTCTTCCACTTCTGGCGGAAGTTCATTGTACACTACTTCTTCTGGAAGACCATCAGTAGCTACAGGAGTTTCCGATGTTACTTCAGAAGTTGGAACGGGATCATCAGCTGCAGTATCAACGACCACAGTTTTGATACCAACAACGTCTTCACTGTTCAGAGCATCATTCAGCTCCTTTTGAATCACTTCAGCAACTTCAGATTCTTGAGTAGTTTCTTCCGA</canonical>
            <polymorphic>GATCTGATTCTTCTTCAGTTGGAAGGTCCTGGAAGCTCTTTGAATTCCGAAGTTCTTCATACTGATTGACATATTCAGATAAAATCACGGAATCGACTGGAAGAACACTTTCCACCATAGAAGTCAACTTATCCAATATGCTTGAAGGTTCGGCAGTTTCTGATTCTTGCCGTGGAGTGTCAGCGACGTCTTCGGAAAGTTGGCTTGGTGGTCCCTGAGCTTCGCTTTCAGAACCAACGTTCTCAGATGGAATGACACTTTCCATAATTGATGTTAACTTATCCAGGATGCTTAGAGATTCTGAAGGGGCAGTTTCTGATTCTTGAGTTTCAGCGACGTCTTCTTTTGCATCTGTTGATGGCTCCTCTGTAAGTTCCTTTTCATGAGCTTGGCTTTCAGAATTAATGTGTCCATATGGAATAACACTTTCCATCATGGAAGTTAACTTATCCAGAATACTTGAAGGTTCAGAAGTAGCATTTTCTGATTCTTGATGTGGRCTATCACCGACATCTTTTTTTGCATCAGCCTGTTGAGTTAGTGGTTCCTCTGTCTCTTCCTCTCCTTGGCTTTCAGAATTAACGTGAAGAACGTCTTCAGAAGGGAGGGCAGCGTCAGTAGGAAGAACATTTTCTACAATAGAGACTAGCTTCTCCATAAGACTTTCTTCTGCATATTTTTCATTTGTGGAGGGAGCCTGAGCTGACGTTGAAGGCGGAGTACCTTCATTCGTCTTTTCTTGTACATCTTCTTCCACTGTTTGAGAATCAGTGACAGATTCTTCCACTTCTGGCGGAAGTTCATTGTACACTACTTCTTCTGGAAGACCATCAGTAGCTACAGGAGTTTCCGATGTTACTTCAGAAGTTGGAACGGGATCATCAGCTGCAGTATCAACGACCACAGTTTTGATACCAACAACGTCTTCACTGTTCAGAGCATCATTCAGCTCCTTTTGAATCACTTCAGCAACTTCAGATTCTTGAGTAGTTTCTTCCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>168 142 135 108 80 64 51 48 47 41 35 28 26 16 6 5</canonical_bands>
                <polymorphic_bands>168 142 136 135 80 64 51 48 47 41 35 26 16 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGGAATAACACTTTCCATCAT</pcr_primer_p1>
		<pcr_primer_p2>TTATGGAGAAGCTAGTCTCTATTGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TATGGAATAACACTTTCCATCATGGAAGTTAACTTATCCAGAATACTTGAAGGTTCAGAAGTAGCATTTTCTGATTCTTGATGTGGGCTATCACCGACATCTTTTTTTGCATCAGCCTGTTGAGTTAGTGGTTCCTCTGTCTCTTCCTCTCCTTGGCTTTCAGAATTAACGTGAAGAACGTCTTCAGAAGGGAGGGCAGCGTCAGTAGGAAGAACATTTTCTACAATAGAGACTAGCTTCTCCATAA</canonical_amplicon>
		<polymorphic_amplicon>TATGGAATAACACTTTCCATCATGGAAGTTAACTTATCCAGAATACTTGAAGGTTCAGAAGTAGCATTTTCTGATTCTTGATGTGGRCTATCACCGACATCTTTTTTTGCATCAGCCTGTTGAGTTAGTGGTTCCTCTGTCTCTTCCTCTCCTTGGCTTTCAGAATTAACGTGAAGAACGTCTTCAGAAGGGAGGGCAGCGTCAGTAGGAAGAACATTTTCTACAATAGAGACTAGCTTCTCCATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19289</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>182002</contig_pos>
        <strand>+</strand>
        <context>TTCCATCATR[A/G]AAGTTAACTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTGGCTTTCAGAATTAATGTGTCCATATGGAATAACACTTTCCATCATG</left_flank>
        <right_flank>AAGTTAACTTATCCAGAATACTTGAAGGTTCAGAAGTAGCATTTTCTGAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGAGCGTTAGATCAGCTGGGTATTCTTGATTTTCTGTGGCAGCATTTTCATTGACTGTTTGATCTGATTCTTCTTCAGTTGGAAGGTCCTGGAAGCTCTTTGAATTCCGAAGTTCTTCATACTGATTGACATATTCAGATAAAATCACGGAATCGACTGGAAGAACACTTTCCACCATAGAAGTCAACTTATCCAATATGCTTGAAGGTTCGGCAGTTTCTGATTCTTGCCGTGGAGTGTCAGCGACGTCTTCGGAAAGTTGGCTTGGTGGTCCCTGAGCTTCGCTTTCAGAACCAACGTTCTCAGATGGAATGACACTTTCCATAATTGATGTTAACTTATCCAGGATGCTTAGAGATTCTGAAGGGGCAGTTTCTGATTCTTGAGTTTCAGCGACGTCTTCTTTTGCATCTGTTGATGGCTCCTCTGTAAGTTCCTTTTCATGAGCTTGGCTTTCAGAATTAATGTGTCCATATGGAATAACACTTTCCATCATGGAAGTTAACTTATCCAGAATACTTGAAGGTTCAGAAGTAGCATTTTCTGATTCTTGATGTGGGCTATCACCGACATCTTTTTTTGCATCAGCCTGTTGAGTTAGTGGTTCCTCTGTCTCTTCCTCTCCTTGGCTTTCAGAATTAACGTGAAGAACGTCTTCAGAAGGGAGGGCAGCGTCAGTAGGAAGAACATTTTCTACAATAGAGACTAGCTTCTCCATAAGACTTTCTTCTGCATATTTTTCATTTGTGGAGGGAGCCTGAGCTGACGTTGAAGGCGGAGTACCTTCATTCGTCTTTTCTTGTACATCTTCTTCCACTGTTTGAGAATCAGTGACAGATTCTTCCACTTCTGGCGGAAGTTCATTGTACACTACTTCTTCTGGAAGACCATCAGTAGCTACAGGAGTTTCCGATGTTACTTCAGAAGTTGGAACGGGATCATCAGCTGCAGTATCAACGACCACAGTTTTGATACCAACAACGTCTTCACTGTTCAGA</canonical>
            <polymorphic>AGAGAGCGTTAGATCAGCTGGGTATTCTTGATTTTCTGTGGCAGCATTTTCATTGACTGTTTGATCTGATTCTTCTTCAGTTGGAAGGTCCTGGAAGCTCTTTGAATTCCGAAGTTCTTCATACTGATTGACATATTCAGATAAAATCACGGAATCGACTGGAAGAACACTTTCCACCATAGAAGTCAACTTATCCAATATGCTTGAAGGTTCGGCAGTTTCTGATTCTTGCCGTGGAGTGTCAGCGACGTCTTCGGAAAGTTGGCTTGGTGGTCCCTGAGCTTCGCTTTCAGAACCAACGTTCTCAGATGGAATGACACTTTCCATAATTGATGTTAACTTATCCAGGATGCTTAGAGATTCTGAAGGGGCAGTTTCTGATTCTTGAGTTTCAGCGACGTCTTCTTTTGCATCTGTTGATGGCTCCTCTGTAAGTTCCTTTTCATGAGCTTGGCTTTCAGAATTAATGTGTCCATATGGAATAACACTTTCCATCATGRAAGTTAACTTATCCAGAATACTTGAAGGTTCAGAAGTAGCATTTTCTGATTCTTGATGTGGGCTATCACCGACATCTTTTTTTGCATCAGCCTGTTGAGTTAGTGGTTCCTCTGTCTCTTCCTCTCCTTGGCTTTCAGAATTAACGTGAAGAACGTCTTCAGAAGGGAGGGCAGCGTCAGTAGGAAGAACATTTTCTACAATAGAGACTAGCTTCTCCATAAGACTTTCTTCTGCATATTTTTCATTTGTGGAGGGAGCCTGAGCTGACGTTGAAGGCGGAGTACCTTCATTCGTCTTTTCTTGTACATCTTCTTCCACTGTTTGAGAATCAGTGACAGATTCTTCCACTTCTGGCGGAAGTTCATTGTACACTACTTCTTCTGGAAGACCATCAGTAGCTACAGGAGTTTCCGATGTTACTTCAGAAGTTGGAACGGGATCATCAGCTGCAGTATCAACGACCACAGTTTTGATACCAACAACGTCTTCACTGTTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACACTTTCCATAATTGATGTT</pcr_primer_p1>
		<pcr_primer_p2>TCAAGAATCAGAAAATGCTACTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TGACACTTTCCATAATTGATGTTAACTTATCCAGGATGCTTAGAGATTCTGAAGGGGCAGTTTCTGATTCTTGAGTTTCAGCGACGTCTTCTTTTGCATCTGTTGATGGCTCCTCTGTAAGTTCCTTTTCATGAGCTTGGCTTTCAGAATTAATGTGTCCATATGGAATAACACTTTCCATCATGGAAGTTAACTTATCCAGAATACTTGAAGGTTCAGAAGTAGCATTTTCTGATTCTTGA</canonical_amplicon>
		<polymorphic_amplicon>TGACACTTTCCATAATTGATGTTAACTTATCCAGGATGCTTAGAGATTCTGAAGGGGCAGTTTCTGATTCTTGAGTTTCAGCGACGTCTTCTTTTGCATCTGTTGATGGCTCCTCTGTAAGTTCCTTTTCATGAGCTTGGCTTTCAGAATTAATGTGTCCATATGGAATAACACTTTCCATCATGRAAGTTAACTTATCCAGAATACTTGAAGGTTCAGAAGTAGCATTTTCTGATTCTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19290</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>182001</contig_pos>
        <strand>+</strand>
        <context>TTTCCATCAT[A/G]RAAGTTAACT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTTGGCTTTCAGAATTAATGTGTCCATATGGAATAACACTTTCCATCAT</left_flank>
        <right_flank>GAAGTTAACTTATCCAGAATACTTGAAGGTTCAGAAGTAGCATTTTCTGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAGAGCGTTAGATCAGCTGGGTATTCTTGATTTTCTGTGGCAGCATTTTCATTGACTGTTTGATCTGATTCTTCTTCAGTTGGAAGGTCCTGGAAGCTCTTTGAATTCCGAAGTTCTTCATACTGATTGACATATTCAGATAAAATCACGGAATCGACTGGAAGAACACTTTCCACCATAGAAGTCAACTTATCCAATATGCTTGAAGGTTCGGCAGTTTCTGATTCTTGCCGTGGAGTGTCAGCGACGTCTTCGGAAAGTTGGCTTGGTGGTCCCTGAGCTTCGCTTTCAGAACCAACGTTCTCAGATGGAATGACACTTTCCATAATTGATGTTAACTTATCCAGGATGCTTAGAGATTCTGAAGGGGCAGTTTCTGATTCTTGAGTTTCAGCGACGTCTTCTTTTGCATCTGTTGATGGCTCCTCTGTAAGTTCCTTTTCATGAGCTTGGCTTTCAGAATTAATGTGTCCATATGGAATAACACTTTCCATCATGGAAGTTAACTTATCCAGAATACTTGAAGGTTCAGAAGTAGCATTTTCTGATTCTTGATGTGGGCTATCACCGACATCTTTTTTTGCATCAGCCTGTTGAGTTAGTGGTTCCTCTGTCTCTTCCTCTCCTTGGCTTTCAGAATTAACGTGAAGAACGTCTTCAGAAGGGAGGGCAGCGTCAGTAGGAAGAACATTTTCTACAATAGAGACTAGCTTCTCCATAAGACTTTCTTCTGCATATTTTTCATTTGTGGAGGGAGCCTGAGCTGACGTTGAAGGCGGAGTACCTTCATTCGTCTTTTCTTGTACATCTTCTTCCACTGTTTGAGAATCAGTGACAGATTCTTCCACTTCTGGCGGAAGTTCATTGTACACTACTTCTTCTGGAAGACCATCAGTAGCTACAGGAGTTTCCGATGTTACTTCAGAAGTTGGAACGGGATCATCAGCTGCAGTATCAACGACCACAGTTTTGATACCAACAACGTCTTCACTGTTCAG</canonical>
            <polymorphic>CAGAGAGCGTTAGATCAGCTGGGTATTCTTGATTTTCTGTGGCAGCATTTTCATTGACTGTTTGATCTGATTCTTCTTCAGTTGGAAGGTCCTGGAAGCTCTTTGAATTCCGAAGTTCTTCATACTGATTGACATATTCAGATAAAATCACGGAATCGACTGGAAGAACACTTTCCACCATAGAAGTCAACTTATCCAATATGCTTGAAGGTTCGGCAGTTTCTGATTCTTGCCGTGGAGTGTCAGCGACGTCTTCGGAAAGTTGGCTTGGTGGTCCCTGAGCTTCGCTTTCAGAACCAACGTTCTCAGATGGAATGACACTTTCCATAATTGATGTTAACTTATCCAGGATGCTTAGAGATTCTGAAGGGGCAGTTTCTGATTCTTGAGTTTCAGCGACGTCTTCTTTTGCATCTGTTGATGGCTCCTCTGTAAGTTCCTTTTCATGAGCTTGGCTTTCAGAATTAATGTGTCCATATGGAATAACACTTTCCATCATRGAAGTTAACTTATCCAGAATACTTGAAGGTTCAGAAGTAGCATTTTCTGATTCTTGATGTGGGCTATCACCGACATCTTTTTTTGCATCAGCCTGTTGAGTTAGTGGTTCCTCTGTCTCTTCCTCTCCTTGGCTTTCAGAATTAACGTGAAGAACGTCTTCAGAAGGGAGGGCAGCGTCAGTAGGAAGAACATTTTCTACAATAGAGACTAGCTTCTCCATAAGACTTTCTTCTGCATATTTTTCATTTGTGGAGGGAGCCTGAGCTGACGTTGAAGGCGGAGTACCTTCATTCGTCTTTTCTTGTACATCTTCTTCCACTGTTTGAGAATCAGTGACAGATTCTTCCACTTCTGGCGGAAGTTCATTGTACACTACTTCTTCTGGAAGACCATCAGTAGCTACAGGAGTTTCCGATGTTACTTCAGAAGTTGGAACGGGATCATCAGCTGCAGTATCAACGACCACAGTTTTGATACCAACAACGTCTTCACTGTTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 445 52</canonical_bands>
                <polymorphic_bands>555 445</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGACACTTTCCATAATTGATGTT</pcr_primer_p1>
		<pcr_primer_p2>TCAAGAATCAGAAAATGCTACTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TGACACTTTCCATAATTGATGTTAACTTATCCAGGATGCTTAGAGATTCTGAAGGGGCAGTTTCTGATTCTTGAGTTTCAGCGACGTCTTCTTTTGCATCTGTTGATGGCTCCTCTGTAAGTTCCTTTTCATGAGCTTGGCTTTCAGAATTAATGTGTCCATATGGAATAACACTTTCCATCATGGAAGTTAACTTATCCAGAATACTTGAAGGTTCAGAAGTAGCATTTTCTGATTCTTGA</canonical_amplicon>
		<polymorphic_amplicon>TGACACTTTCCATAATTGATGTTAACTTATCCAGGATGCTTAGAGATTCTGAAGGGGCAGTTTCTGATTCTTGAGTTTCAGCGACGTCTTCTTTTGCATCTGTTGATGGCTCCTCTGTAAGTTCCTTTTCATGAGCTTGGCTTTCAGAATTAATGTGTCCATATGGAATAACACTTTCCATCATRGAAGTTAACTTATCCAGAATACTTGAAGGTTCAGAAGTAGCATTTTCTGATTCTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19339</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>299506</contig_pos>
        <strand>+</strand>
        <context>ATTTTCTCGA[A/C]TTGATCAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGGTCCAATTTGAAAGAGTAGCAAGCCAAAAGTTGTCCCAATTTTCTCGA</left_flank>
        <right_flank>TTGATCAATTTTTGATGGATTGGAAGAAGTGTTCGTTAGTGCTGAACATT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGTGTCGTGTCGCCGACTTGTCGTCCTCATCAGAAGCAATGACGACTACAGACGATGGTACGGTGGATGGAGGGCGATCTGTCTCGAGGCAGTCCGAGTGGAGGCGATTCAGCTCTTCGTGAAGCTCCATCACACGATGCGTGACTCCAGCAAGTTCTCCAAAATCGCCGGCAAGCTTGAGGACTGTCGAGAAGCTGTAGATGAGGTAGAGGTAGAAGAAGGCATTCTGAAAGATTATTTTTCATTTTTCAAATAGCCCATGCTTCTCCAAATCTAGCTTTCTCCCTTTTTATGATCCCAGATCTCAGCTAGCTTTCCTTCTTTTCTCTATTCCCAGAAAGAATAAAGACCCGGGCAGATGGGCTCCAGATAGTCAAGAAGGGGGAAAGTGATTAATTAGTTTGTGGTGGGACGACAATAAAAGAAAGCGGAGGACTGACGAATTGTTGGTCCAATTTGAAAGAGTAGCAAGCCAAAAGTTGTCCCAATTTTCTCGAATTGATCAATTTTTGATGGATTGGAAGAAGTGTTCGTTAGTGCTGAACATTCTAAACGAAGAAAAAACTACTGCAAATTCCCTAGAGATCTTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCTAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTATTCTTTTCGTTTAATCATCATTCATTTGAGAAAAAAAAAGAAATTGATGAGATCACAAAGAGTCAGCTGACTTCTCCACCAGTTGTTCAATCCCAAGCCCCCAATTCTTTTCATTCTTTTCTCAAGCTGCTCTATCTGGCAAAAAGGAAGGAAGGAGACGAAAAAGGAGTGCCGATTGTGTTTGTTGCCTTGTGACTCTGTGAACTGAACGACCATCTGCCAGTACTCTCTTCCGGGGCGACGACACTTGAAGAAAATCAAAGAGCAACGACAAGAGATACATTCGATTAGAATGATCCTAGA</canonical>
            <polymorphic>CATGTGTCGTGTCGCCGACTTGTCGTCCTCATCAGAAGCAATGACGACTACAGACGATGGTACGGTGGATGGAGGGCGATCTGTCTCGAGGCAGTCCGAGTGGAGGCGATTCAGCTCTTCGTGAAGCTCCATCACACGATGCGTGACTCCAGCAAGTTCTCCAAAATCGCCGGCAAGCTTGAGGACTGTCGAGAAGCTGTAGATGAGGTAGAGGTAGAAGAAGGCATTCTGAAAGATTATTTTTCATTTTTCAAATAGCCCATGCTTCTCCAAATCTAGCTTTCTCCCTTTTTATGATCCCAGATCTCAGCTAGCTTTCCTTCTTTTCTCTATTCCCAGAAAGAATAAAGACCCGGGCAGATGGGCTCCAGATAGTCAAGAAGGGGGAAAGTGATTAATTAGTTTGTGGTGGGACGACAATAAAAGAAAGCGGAGGACTGACGAATTGTTGGTCCAATTTGAAAGAGTAGCAAGCCAAAAGTTGTCCCAATTTTCTCGAMTTGATCAATTTTTGATGGATTGGAAGAAGTGTTCGTTAGTGCTGAACATTCTAAACGAAGAAAAAACTACTGCAAATTCCCTAGAGATCTTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCTAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTATTCTTTTCGTTTAATCATCATTCATTTGAGAAAAAAAAAGAAATTGATGAGATCACAAAGAGTCAGCTGACTTCTCCACCAGTTGTTCAATCCCAAGCCCCCAATTCTTTTCATTCTTTTCTCAAGCTGCTCTATCTGGCAAAAAGGAAGGAAGGAGACGAAAAAGGAGTGCCGATTGTGTTTGTTGCCTTGTGACTCTGTGAACTGAACGACCATCTGCCAGTACTCTCTTCCGGGGCGACGACACTTGAAGAAAATCAAAGAGCAACGACAAGAGATACATTCGATTAGAATGATCCTAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>396 201 98 68 61 47 47 33 19 12 10 8</canonical_bands>
                <polymorphic_bands>396 201 98 68 61 47 47 33 19 18 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTAGCTTTCCTTCTTTTCTCTA</pcr_primer_p1>
		<pcr_primer_p2>GTTTAGAATGTTCAGCACTAACG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GCTAGCTTTCCTTCTTTTCTCTATTCCCAGAAAGAATAAAGACCCGGGCAGATGGGCTCCAGATAGTCAAGAAGGGGGAAAGTGATTAATTAGTTTGTGGTGGGACGACAATAAAAGAAAGCGGAGGACTGACGAATTGTTGGTCCAATTTGAAAGAGTAGCAAGCCAAAAGTTGTCCCAATTTTCTCGAATTGATCAATTTTTGATGGATTGGAAGAAGTGTTCGTTAGTGCTGAACATTCTAAAC</canonical_amplicon>
		<polymorphic_amplicon>GCTAGCTTTCCTTCTTTTCTCTATTCCCAGAAAGAATAAAGACCCGGGCAGATGGGCTCCAGATAGTCAAGAAGGGGGAAAGTGATTAATTAGTTTGTGGTGGGACGACAATAAAAGAAAGCGGAGGACTGACGAATTGTTGGTCCAATTTGAAAGAGTAGCAAGCCAAAAGTTGTCCCAATTTTCTCGAMTTGATCAATTTTTGATGGATTGGAAGAAGTGTTCGTTAGTGCTGAACATTCTAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19340</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>299580</contig_pos>
        <strand>+</strand>
        <context>AAACTACTGC[A/G]AATWCCCTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGAAGTGTTCGTTAGTGCTGAACATTCTAAACGAAGAAAAAACTACTGC</left_flank>
        <right_flank>AATTCCCTAGAGATCTTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCGATCTGTCTCGAGGCAGTCCGAGTGGAGGCGATTCAGCTCTTCGTGAAGCTCCATCACACGATGCGTGACTCCAGCAAGTTCTCCAAAATCGCCGGCAAGCTTGAGGACTGTCGAGAAGCTGTAGATGAGGTAGAGGTAGAAGAAGGCATTCTGAAAGATTATTTTTCATTTTTCAAATAGCCCATGCTTCTCCAAATCTAGCTTTCTCCCTTTTTATGATCCCAGATCTCAGCTAGCTTTCCTTCTTTTCTCTATTCCCAGAAAGAATAAAGACCCGGGCAGATGGGCTCCAGATAGTCAAGAAGGGGGAAAGTGATTAATTAGTTTGTGGTGGGACGACAATAAAAGAAAGCGGAGGACTGACGAATTGTTGGTCCAATTTGAAAGAGTAGCAAGCCAAAAGTTGTCCCAATTTTCTCGAATTGATCAATTTTTGATGGATTGGAAGAAGTGTTCGTTAGTGCTGAACATTCTAAACGAAGAAAAAACTACTGCAAATTCCCTAGAGATCTTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCTAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTATTCTTTTCGTTTAATCATCATTCATTTGAGAAAAAAAAAGAAATTGATGAGATCACAAAGAGTCAGCTGACTTCTCCACCAGTTGTTCAATCCCAAGCCCCCAATTCTTTTCATTCTTTTCTCAAGCTGCTCTATCTGGCAAAAAGGAAGGAAGGAGACGAAAAAGGAGTGCCGATTGTGTTTGTTGCCTTGTGACTCTGTGAACTGAACGACCATCTGCCAGTACTCTCTTCCGGGGCGACGACACTTGAAGAAAATCAAAGAGCAACGACAAGAGATACATTCGATTAGAATGATCCTAGAAGACGTGCTTTTTCAGATCCCAATCTGTGGTAAGAAACACCAAGGATTCCTCGAAGTCATCAGAAATCGAAGAG</canonical>
            <polymorphic>GGCGATCTGTCTCGAGGCAGTCCGAGTGGAGGCGATTCAGCTCTTCGTGAAGCTCCATCACACGATGCGTGACTCCAGCAAGTTCTCCAAAATCGCCGGCAAGCTTGAGGACTGTCGAGAAGCTGTAGATGAGGTAGAGGTAGAAGAAGGCATTCTGAAAGATTATTTTTCATTTTTCAAATAGCCCATGCTTCTCCAAATCTAGCTTTCTCCCTTTTTATGATCCCAGATCTCAGCTAGCTTTCCTTCTTTTCTCTATTCCCAGAAAGAATAAAGACCCGGGCAGATGGGCTCCAGATAGTCAAGAAGGGGGAAAGTGATTAATTAGTTTGTGGTGGGACGACAATAAAAGAAAGCGGAGGACTGACGAATTGTTGGTCCAATTTGAAAGAGTAGCAAGCCAAAAGTTGTCCCAATTTTCTCGAATTGATCAATTTTTGATGGATTGGAAGAAGTGTTCGTTAGTGCTGAACATTCTAAACGAAGAAAAAACTACTGCRAATTCCCTAGAGATCTTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCTAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTATTCTTTTCGTTTAATCATCATTCATTTGAGAAAAAAAAAGAAATTGATGAGATCACAAAGAGTCAGCTGACTTCTCCACCAGTTGTTCAATCCCAAGCCCCCAATTCTTTTCATTCTTTTCTCAAGCTGCTCTATCTGGCAAAAAGGAAGGAAGGAGACGAAAAAGGAGTGCCGATTGTGTTTGTTGCCTTGTGACTCTGTGAACTGAACGACCATCTGCCAGTACTCTCTTCCGGGGCGACGACACTTGAAGAAAATCAAAGAGCAACGACAAGAGATACATTCGATTAGAATGATCCTAGAAGACGTGCTTTTTCAGATCCCAATCTGTGGTAAGAAACACCAAGGATTCCTCGAAGTCATCAGAAATCGAAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>500 434 66</canonical_bands>
                <polymorphic_bands>566 434</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCCAATTTGAAAGAGTAG</pcr_primer_p1>
		<pcr_primer_p2>ATAGCACAAAGAAAACAACTCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGGTCCAATTTGAAAGAGTAGCAAGCCAAAAGTTGTCCCAATTTTCTCGAATTGATCAATTTTTGATGGATTGGAAGAAGTGTTCGTTAGTGCTGAACATTCTAAACGAAGAAAAAACTACTGCAAATTCCCTAGAGATCTTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCTAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTAT</canonical_amplicon>
		<polymorphic_amplicon>TTGGTCCAATTTGAAAGAGTAGCAAGCCAAAAGTTGTCCCAATTTTCTCGAATTGATCAATTTTTGATGGATTGGAAGAAGTGTTCGTTAGTGCTGAACATTCTAAACGAAGAAAAAACTACTGCRAATTCCCTAGAGATCTTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCTAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19341</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>299584</contig_pos>
        <strand>+</strand>
        <context>TACTGCRAAT[A/T]CCCTAGAGRT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTGTTCGTTAGTGCTGAACATTCTAAACGAAGAAAAAACTACTGCAAAT</left_flank>
        <right_flank>CCCTAGAGATCTTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTGTCTCGAGGCAGTCCGAGTGGAGGCGATTCAGCTCTTCGTGAAGCTCCATCACACGATGCGTGACTCCAGCAAGTTCTCCAAAATCGCCGGCAAGCTTGAGGACTGTCGAGAAGCTGTAGATGAGGTAGAGGTAGAAGAAGGCATTCTGAAAGATTATTTTTCATTTTTCAAATAGCCCATGCTTCTCCAAATCTAGCTTTCTCCCTTTTTATGATCCCAGATCTCAGCTAGCTTTCCTTCTTTTCTCTATTCCCAGAAAGAATAAAGACCCGGGCAGATGGGCTCCAGATAGTCAAGAAGGGGGAAAGTGATTAATTAGTTTGTGGTGGGACGACAATAAAAGAAAGCGGAGGACTGACGAATTGTTGGTCCAATTTGAAAGAGTAGCAAGCCAAAAGTTGTCCCAATTTTCTCGAATTGATCAATTTTTGATGGATTGGAAGAAGTGTTCGTTAGTGCTGAACATTCTAAACGAAGAAAAAACTACTGCAAATTCCCTAGAGATCTTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCTAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTATTCTTTTCGTTTAATCATCATTCATTTGAGAAAAAAAAAGAAATTGATGAGATCACAAAGAGTCAGCTGACTTCTCCACCAGTTGTTCAATCCCAAGCCCCCAATTCTTTTCATTCTTTTCTCAAGCTGCTCTATCTGGCAAAAAGGAAGGAAGGAGACGAAAAAGGAGTGCCGATTGTGTTTGTTGCCTTGTGACTCTGTGAACTGAACGACCATCTGCCAGTACTCTCTTCCGGGGCGACGACACTTGAAGAAAATCAAAGAGCAACGACAAGAGATACATTCGATTAGAATGATCCTAGAAGACGTGCTTTTTCAGATCCCAATCTGTGGTAAGAAACACCAAGGATTCCTCGAAGTCATCAGAAATCGAAGAGAGAC</canonical>
            <polymorphic>ATCTGTCTCGAGGCAGTCCGAGTGGAGGCGATTCAGCTCTTCGTGAAGCTCCATCACACGATGCGTGACTCCAGCAAGTTCTCCAAAATCGCCGGCAAGCTTGAGGACTGTCGAGAAGCTGTAGATGAGGTAGAGGTAGAAGAAGGCATTCTGAAAGATTATTTTTCATTTTTCAAATAGCCCATGCTTCTCCAAATCTAGCTTTCTCCCTTTTTATGATCCCAGATCTCAGCTAGCTTTCCTTCTTTTCTCTATTCCCAGAAAGAATAAAGACCCGGGCAGATGGGCTCCAGATAGTCAAGAAGGGGGAAAGTGATTAATTAGTTTGTGGTGGGACGACAATAAAAGAAAGCGGAGGACTGACGAATTGTTGGTCCAATTTGAAAGAGTAGCAAGCCAAAAGTTGTCCCAATTTTCTCGAATTGATCAATTTTTGATGGATTGGAAGAAGTGTTCGTTAGTGCTGAACATTCTAAACGAAGAAAAAACTACTGCAAATWCCCTAGAGATCTTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCTAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTATTCTTTTCGTTTAATCATCATTCATTTGAGAAAAAAAAAGAAATTGATGAGATCACAAAGAGTCAGCTGACTTCTCCACCAGTTGTTCAATCCCAAGCCCCCAATTCTTTTCATTCTTTTCTCAAGCTGCTCTATCTGGCAAAAAGGAAGGAAGGAGACGAAAAAGGAGTGCCGATTGTGTTTGTTGCCTTGTGACTCTGTGAACTGAACGACCATCTGCCAGTACTCTCTTCCGGGGCGACGACACTTGAAGAAAATCAAAGAGCAACGACAAGAGATACATTCGATTAGAATGATCCTAGAAGACGTGCTTTTTCAGATCCCAATCTGTGGTAAGAAACACCAAGGATTCCTCGAAGTCATCAGAAATCGAAGAGAGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>496 438 66</canonical_bands>
                <polymorphic_bands>562 438</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>318 279 98 68 61 47 47 33 19 12 10 8</canonical_bands>
                <polymorphic_bands>318 279 115 98 61 47 33 19 12 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCCAATTTGAAAGAGTAG</pcr_primer_p1>
		<pcr_primer_p2>ATAGCACAAAGAAAACAACTCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGGTCCAATTTGAAAGAGTAGCAAGCCAAAAGTTGTCCCAATTTTCTCGAATTGATCAATTTTTGATGGATTGGAAGAAGTGTTCGTTAGTGCTGAACATTCTAAACGAAGAAAAAACTACTGCAAATTCCCTAGAGATCTTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCTAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTAT</canonical_amplicon>
		<polymorphic_amplicon>TTGGTCCAATTTGAAAGAGTAGCAAGCCAAAAGTTGTCCCAATTTTCTCGAATTGATCAATTTTTGATGGATTGGAAGAAGTGTTCGTTAGTGCTGAACATTCTAAACGAAGAAAAAACTACTGCAAATWCCCTAGAGATCTTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCTAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19342</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>299593</contig_pos>
        <strand>+</strand>
        <context>TWCCCTAGAG[A/G]TCTTTCTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGTGCTGAACATTCTAAACGAAGAAAAAACTACTGCAAATTCCCTAGAG</left_flank>
        <right_flank>TCTTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGGCAGTCCGAGTGGAGGCGATTCAGCTCTTCGTGAAGCTCCATCACACGATGCGTGACTCCAGCAAGTTCTCCAAAATCGCCGGCAAGCTTGAGGACTGTCGAGAAGCTGTAGATGAGGTAGAGGTAGAAGAAGGCATTCTGAAAGATTATTTTTCATTTTTCAAATAGCCCATGCTTCTCCAAATCTAGCTTTCTCCCTTTTTATGATCCCAGATCTCAGCTAGCTTTCCTTCTTTTCTCTATTCCCAGAAAGAATAAAGACCCGGGCAGATGGGCTCCAGATAGTCAAGAAGGGGGAAAGTGATTAATTAGTTTGTGGTGGGACGACAATAAAAGAAAGCGGAGGACTGACGAATTGTTGGTCCAATTTGAAAGAGTAGCAAGCCAAAAGTTGTCCCAATTTTCTCGAATTGATCAATTTTTGATGGATTGGAAGAAGTGTTCGTTAGTGCTGAACATTCTAAACGAAGAAAAAACTACTGCAAATTCCCTAGAGATCTTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCTAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTATTCTTTTCGTTTAATCATCATTCATTTGAGAAAAAAAAAGAAATTGATGAGATCACAAAGAGTCAGCTGACTTCTCCACCAGTTGTTCAATCCCAAGCCCCCAATTCTTTTCATTCTTTTCTCAAGCTGCTCTATCTGGCAAAAAGGAAGGAAGGAGACGAAAAAGGAGTGCCGATTGTGTTTGTTGCCTTGTGACTCTGTGAACTGAACGACCATCTGCCAGTACTCTCTTCCGGGGCGACGACACTTGAAGAAAATCAAAGAGCAACGACAAGAGATACATTCGATTAGAATGATCCTAGAAGACGTGCTTTTTCAGATCCCAATCTGTGGTAAGAAACACCAAGGATTCCTCGAAGTCATCAGAAATCGAAGAGAGACGAGAAGTTC</canonical>
            <polymorphic>GAGGCAGTCCGAGTGGAGGCGATTCAGCTCTTCGTGAAGCTCCATCACACGATGCGTGACTCCAGCAAGTTCTCCAAAATCGCCGGCAAGCTTGAGGACTGTCGAGAAGCTGTAGATGAGGTAGAGGTAGAAGAAGGCATTCTGAAAGATTATTTTTCATTTTTCAAATAGCCCATGCTTCTCCAAATCTAGCTTTCTCCCTTTTTATGATCCCAGATCTCAGCTAGCTTTCCTTCTTTTCTCTATTCCCAGAAAGAATAAAGACCCGGGCAGATGGGCTCCAGATAGTCAAGAAGGGGGAAAGTGATTAATTAGTTTGTGGTGGGACGACAATAAAAGAAAGCGGAGGACTGACGAATTGTTGGTCCAATTTGAAAGAGTAGCAAGCCAAAAGTTGTCCCAATTTTCTCGAATTGATCAATTTTTGATGGATTGGAAGAAGTGTTCGTTAGTGCTGAACATTCTAAACGAAGAAAAAACTACTGCAAATTCCCTAGAGRTCTTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCTAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTATTCTTTTCGTTTAATCATCATTCATTTGAGAAAAAAAAAGAAATTGATGAGATCACAAAGAGTCAGCTGACTTCTCCACCAGTTGTTCAATCCCAAGCCCCCAATTCTTTTCATTCTTTTCTCAAGCTGCTCTATCTGGCAAAAAGGAAGGAAGGAGACGAAAAAGGAGTGCCGATTGTGTTTGTTGCCTTGTGACTCTGTGAACTGAACGACCATCTGCCAGTACTCTCTTCCGGGGCGACGACACTTGAAGAAAATCAAAGAGCAACGACAAGAGATACATTCGATTAGAATGATCCTAGAAGACGTGCTTTTTCAGATCCCAATCTGTGGTAAGAAACACCAAGGATTCCTCGAAGTCATCAGAAATCGAAGAGAGACGAGAAGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>244 208 200 162 83 72 24 7</canonical_bands>
                <polymorphic_bands>245 244 208 200 72 24 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>502 283 215</canonical_bands>
                <polymorphic_bands>785 215</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>430 283 215 72</canonical_bands>
                <polymorphic_bands>713 215 72</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCCAATTTGAAAGAGTAG</pcr_primer_p1>
		<pcr_primer_p2>ATAGCACAAAGAAAACAACTCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGGTCCAATTTGAAAGAGTAGCAAGCCAAAAGTTGTCCCAATTTTCTCGAATTGATCAATTTTTGATGGATTGGAAGAAGTGTTCGTTAGTGCTGAACATTCTAAACGAAGAAAAAACTACTGCAAATTCCCTAGAGATCTTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCTAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTAT</canonical_amplicon>
		<polymorphic_amplicon>TTGGTCCAATTTGAAAGAGTAGCAAGCCAAAAGTTGTCCCAATTTTCTCGAATTGATCAATTTTTGATGGATTGGAAGAAGTGTTCGTTAGTGCTGAACATTCTAAACGAAGAAAAAACTACTGCAAATTCCCTAGAGRTCTTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCTAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19343</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>299645</contig_pos>
        <strand>+</strand>
        <context>ATGTATTTTC[C/T]AAATTCCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTC</left_flank>
        <right_flank>AAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCGTGACTCCAGCAAGTTCTCCAAAATCGCCGGCAAGCTTGAGGACTGTCGAGAAGCTGTAGATGAGGTAGAGGTAGAAGAAGGCATTCTGAAAGATTATTTTTCATTTTTCAAATAGCCCATGCTTCTCCAAATCTAGCTTTCTCCCTTTTTATGATCCCAGATCTCAGCTAGCTTTCCTTCTTTTCTCTATTCCCAGAAAGAATAAAGACCCGGGCAGATGGGCTCCAGATAGTCAAGAAGGGGGAAAGTGATTAATTAGTTTGTGGTGGGACGACAATAAAAGAAAGCGGAGGACTGACGAATTGTTGGTCCAATTTGAAAGAGTAGCAAGCCAAAAGTTGTCCCAATTTTCTCGAATTGATCAATTTTTGATGGATTGGAAGAAGTGTTCGTTAGTGCTGAACATTCTAAACGAAGAAAAAACTACTGCAAATTCCCTAGAGATCTTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCTAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTATTCTTTTCGTTTAATCATCATTCATTTGAGAAAAAAAAAGAAATTGATGAGATCACAAAGAGTCAGCTGACTTCTCCACCAGTTGTTCAATCCCAAGCCCCCAATTCTTTTCATTCTTTTCTCAAGCTGCTCTATCTGGCAAAAAGGAAGGAAGGAGACGAAAAAGGAGTGCCGATTGTGTTTGTTGCCTTGTGACTCTGTGAACTGAACGACCATCTGCCAGTACTCTCTTCCGGGGCGACGACACTTGAAGAAAATCAAAGAGCAACGACAAGAGATACATTCGATTAGAATGATCCTAGAAGACGTGCTTTTTCAGATCCCAATCTGTGGTAAGAAACACCAAGGATTCCTCGAAGTCATCAGAAATCGAAGAGAGACGAGAAGTTCACTTTTTGCAGGAGGGGTATCGCATTTCTTGTCTATTCTAAACTCTAAACTT</canonical>
            <polymorphic>TGCGTGACTCCAGCAAGTTCTCCAAAATCGCCGGCAAGCTTGAGGACTGTCGAGAAGCTGTAGATGAGGTAGAGGTAGAAGAAGGCATTCTGAAAGATTATTTTTCATTTTTCAAATAGCCCATGCTTCTCCAAATCTAGCTTTCTCCCTTTTTATGATCCCAGATCTCAGCTAGCTTTCCTTCTTTTCTCTATTCCCAGAAAGAATAAAGACCCGGGCAGATGGGCTCCAGATAGTCAAGAAGGGGGAAAGTGATTAATTAGTTTGTGGTGGGACGACAATAAAAGAAAGCGGAGGACTGACGAATTGTTGGTCCAATTTGAAAGAGTAGCAAGCCAAAAGTTGTCCCAATTTTCTCGAATTGATCAATTTTTGATGGATTGGAAGAAGTGTTCGTTAGTGCTGAACATTCTAAACGAAGAAAAAACTACTGCAAATTCCCTAGAGATCTTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCYAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTATTCTTTTCGTTTAATCATCATTCATTTGAGAAAAAAAAAGAAATTGATGAGATCACAAAGAGTCAGCTGACTTCTCCACCAGTTGTTCAATCCCAAGCCCCCAATTCTTTTCATTCTTTTCTCAAGCTGCTCTATCTGGCAAAAAGGAAGGAAGGAGACGAAAAAGGAGTGCCGATTGTGTTTGTTGCCTTGTGACTCTGTGAACTGAACGACCATCTGCCAGTACTCTCTTCCGGGGCGACGACACTTGAAGAAAATCAAAGAGCAACGACAAGAGATACATTCGATTAGAATGATCCTAGAAGACGTGCTTTTTCAGATCCCAATCTGTGGTAAGAAACACCAAGGATTCCTCGAAGTCATCAGAAATCGAAGAGAGACGAGAAGTTCACTTTTTGCAGGAGGGGTATCGCATTTCTTGTCTATTCTAAACTCTAAACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCCAATTTGAAAGAGTAG</pcr_primer_p1>
		<pcr_primer_p2>ATAGCACAAAGAAAACAACTCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGGTCCAATTTGAAAGAGTAGCAAGCCAAAAGTTGTCCCAATTTTCTCGAATTGATCAATTTTTGATGGATTGGAAGAAGTGTTCGTTAGTGCTGAACATTCTAAACGAAGAAAAAACTACTGCAAATTCCCTAGAGATCTTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCTAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTAT</canonical_amplicon>
		<polymorphic_amplicon>TTGGTCCAATTTGAAAGAGTAGCAAGCCAAAAGTTGTCCCAATTTTCTCGAATTGATCAATTTTTGATGGATTGGAAGAAGTGTTCGTTAGTGCTGAACATTCTAAACGAAGAAAAAACTACTGCAAATTCCCTAGAGATCTTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCYAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19344</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>299706</contig_pos>
        <strand>+</strand>
        <context>TTGTGCTATT[C/T]KTTTCGTTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTATT</left_flank>
        <right_flank>TTTTCGTTTAATCATCATTCATTTGAGAAAAAAAAAGAAATTGATGAGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATGAGGTAGAGGTAGAAGAAGGCATTCTGAAAGATTATTTTTCATTTTTCAAATAGCCCATGCTTCTCCAAATCTAGCTTTCTCCCTTTTTATGATCCCAGATCTCAGCTAGCTTTCCTTCTTTTCTCTATTCCCAGAAAGAATAAAGACCCGGGCAGATGGGCTCCAGATAGTCAAGAAGGGGGAAAGTGATTAATTAGTTTGTGGTGGGACGACAATAAAAGAAAGCGGAGGACTGACGAATTGTTGGTCCAATTTGAAAGAGTAGCAAGCCAAAAGTTGTCCCAATTTTCTCGAATTGATCAATTTTTGATGGATTGGAAGAAGTGTTCGTTAGTGCTGAACATTCTAAACGAAGAAAAAACTACTGCAAATTCCCTAGAGATCTTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCTAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTATTCTTTTCGTTTAATCATCATTCATTTGAGAAAAAAAAAGAAATTGATGAGATCACAAAGAGTCAGCTGACTTCTCCACCAGTTGTTCAATCCCAAGCCCCCAATTCTTTTCATTCTTTTCTCAAGCTGCTCTATCTGGCAAAAAGGAAGGAAGGAGACGAAAAAGGAGTGCCGATTGTGTTTGTTGCCTTGTGACTCTGTGAACTGAACGACCATCTGCCAGTACTCTCTTCCGGGGCGACGACACTTGAAGAAAATCAAAGAGCAACGACAAGAGATACATTCGATTAGAATGATCCTAGAAGACGTGCTTTTTCAGATCCCAATCTGTGGTAAGAAACACCAAGGATTCCTCGAAGTCATCAGAAATCGAAGAGAGACGAGAAGTTCACTTTTTGCAGGAGGGGTATCGCATTTCTTGTCTATTCTAAACTCTAAACTTTCATGTAAACTGATATTTTGATTCCAATTTTTTGTTATTGTTATAAAGCAAAGTGCAATTT</canonical>
            <polymorphic>AGATGAGGTAGAGGTAGAAGAAGGCATTCTGAAAGATTATTTTTCATTTTTCAAATAGCCCATGCTTCTCCAAATCTAGCTTTCTCCCTTTTTATGATCCCAGATCTCAGCTAGCTTTCCTTCTTTTCTCTATTCCCAGAAAGAATAAAGACCCGGGCAGATGGGCTCCAGATAGTCAAGAAGGGGGAAAGTGATTAATTAGTTTGTGGTGGGACGACAATAAAAGAAAGCGGAGGACTGACGAATTGTTGGTCCAATTTGAAAGAGTAGCAAGCCAAAAGTTGTCCCAATTTTCTCGAATTGATCAATTTTTGATGGATTGGAAGAAGTGTTCGTTAGTGCTGAACATTCTAAACGAAGAAAAAACTACTGCAAATTCCCTAGAGATCTTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCTAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTATTYTTTTCGTTTAATCATCATTCATTTGAGAAAAAAAAAGAAATTGATGAGATCACAAAGAGTCAGCTGACTTCTCCACCAGTTGTTCAATCCCAAGCCCCCAATTCTTTTCATTCTTTTCTCAAGCTGCTCTATCTGGCAAAAAGGAAGGAAGGAGACGAAAAAGGAGTGCCGATTGTGTTTGTTGCCTTGTGACTCTGTGAACTGAACGACCATCTGCCAGTACTCTCTTCCGGGGCGACGACACTTGAAGAAAATCAAAGAGCAACGACAAGAGATACATTCGATTAGAATGATCCTAGAAGACGTGCTTTTTCAGATCCCAATCTGTGGTAAGAAACACCAAGGATTCCTCGAAGTCATCAGAAATCGAAGAGAGACGAGAAGTTCACTTTTTGCAGGAGGGGTATCGCATTTCTTGTCTATTCTAAACTCTAAACTTTCATGTAAACTGATATTTTGATTCCAATTTTTTGTTATTGTTATAAAGCAAAGTGCAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTTCCAAAGTAAGACTCCT</pcr_primer_p1>
		<pcr_primer_p2>ATAGAGCAGCTTGAGAAAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCTAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTATTCTTTTCGTTTAATCATCATTCATTTGAGAAAAAAAAAGAAATTGATGAGATCACAAAGAGTCAGCTGACTTCTCCACCAGTTGTTCAATCCCAAGCCCCCAATTCTTTTCATTCTTTTCTCAAGCTGCTCTAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCTAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTATTYTTTTCGTTTAATCATCATTCATTTGAGAAAAAAAAAGAAATTGATGAGATCACAAAGAGTCAGCTGACTTCTCCACCAGTTGTTCAATCCCAAGCCCCCAATTCTTTTCATTCTTTTCTCAAGCTGCTCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19345</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>299707</contig_pos>
        <strand>+</strand>
        <context>TGTGCTATTY[G/T]TTTCGTTTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTATTC</left_flank>
        <right_flank>TTTCGTTTAATCATCATTCATTTGAGAAAAAAAAAGAAATTGATGAGATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGAGGTAGAGGTAGAAGAAGGCATTCTGAAAGATTATTTTTCATTTTTCAAATAGCCCATGCTTCTCCAAATCTAGCTTTCTCCCTTTTTATGATCCCAGATCTCAGCTAGCTTTCCTTCTTTTCTCTATTCCCAGAAAGAATAAAGACCCGGGCAGATGGGCTCCAGATAGTCAAGAAGGGGGAAAGTGATTAATTAGTTTGTGGTGGGACGACAATAAAAGAAAGCGGAGGACTGACGAATTGTTGGTCCAATTTGAAAGAGTAGCAAGCCAAAAGTTGTCCCAATTTTCTCGAATTGATCAATTTTTGATGGATTGGAAGAAGTGTTCGTTAGTGCTGAACATTCTAAACGAAGAAAAAACTACTGCAAATTCCCTAGAGATCTTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCTAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTATTCTTTTCGTTTAATCATCATTCATTTGAGAAAAAAAAAGAAATTGATGAGATCACAAAGAGTCAGCTGACTTCTCCACCAGTTGTTCAATCCCAAGCCCCCAATTCTTTTCATTCTTTTCTCAAGCTGCTCTATCTGGCAAAAAGGAAGGAAGGAGACGAAAAAGGAGTGCCGATTGTGTTTGTTGCCTTGTGACTCTGTGAACTGAACGACCATCTGCCAGTACTCTCTTCCGGGGCGACGACACTTGAAGAAAATCAAAGAGCAACGACAAGAGATACATTCGATTAGAATGATCCTAGAAGACGTGCTTTTTCAGATCCCAATCTGTGGTAAGAAACACCAAGGATTCCTCGAAGTCATCAGAAATCGAAGAGAGACGAGAAGTTCACTTTTTGCAGGAGGGGTATCGCATTTCTTGTCTATTCTAAACTCTAAACTTTCATGTAAACTGATATTTTGATTCCAATTTTTTGTTATTGTTATAAAGCAAAGTGCAATTTG</canonical>
            <polymorphic>GATGAGGTAGAGGTAGAAGAAGGCATTCTGAAAGATTATTTTTCATTTTTCAAATAGCCCATGCTTCTCCAAATCTAGCTTTCTCCCTTTTTATGATCCCAGATCTCAGCTAGCTTTCCTTCTTTTCTCTATTCCCAGAAAGAATAAAGACCCGGGCAGATGGGCTCCAGATAGTCAAGAAGGGGGAAAGTGATTAATTAGTTTGTGGTGGGACGACAATAAAAGAAAGCGGAGGACTGACGAATTGTTGGTCCAATTTGAAAGAGTAGCAAGCCAAAAGTTGTCCCAATTTTCTCGAATTGATCAATTTTTGATGGATTGGAAGAAGTGTTCGTTAGTGCTGAACATTCTAAACGAAGAAAAAACTACTGCAAATTCCCTAGAGATCTTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCTAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTATTCKTTTCGTTTAATCATCATTCATTTGAGAAAAAAAAAGAAATTGATGAGATCACAAAGAGTCAGCTGACTTCTCCACCAGTTGTTCAATCCCAAGCCCCCAATTCTTTTCATTCTTTTCTCAAGCTGCTCTATCTGGCAAAAAGGAAGGAAGGAGACGAAAAAGGAGTGCCGATTGTGTTTGTTGCCTTGTGACTCTGTGAACTGAACGACCATCTGCCAGTACTCTCTTCCGGGGCGACGACACTTGAAGAAAATCAAAGAGCAACGACAAGAGATACATTCGATTAGAATGATCCTAGAAGACGTGCTTTTTCAGATCCCAATCTGTGGTAAGAAACACCAAGGATTCCTCGAAGTCATCAGAAATCGAAGAGAGACGAGAAGTTCACTTTTTGCAGGAGGGGTATCGCATTTCTTGTCTATTCTAAACTCTAAACTTTCATGTAAACTGATATTTTGATTCCAATTTTTTGTTATTGTTATAAAGCAAAGTGCAATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTTCCAAAGTAAGACTCCT</pcr_primer_p1>
		<pcr_primer_p2>ATAGAGCAGCTTGAGAAAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCTAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTATTCTTTTCGTTTAATCATCATTCATTTGAGAAAAAAAAAGAAATTGATGAGATCACAAAGAGTCAGCTGACTTCTCCACCAGTTGTTCAATCCCAAGCCCCCAATTCTTTTCATTCTTTTCTCAAGCTGCTCTAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCTAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTATTCKTTTCGTTTAATCATCATTCATTTGAGAAAAAAAAAGAAATTGATGAGATCACAAAGAGTCAGCTGACTTCTCCACCAGTTGTTCAATCCCAAGCCCCCAATTCTTTTCATTCTTTTCTCAAGCTGCTCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19346</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>299750</contig_pos>
        <strand></strand>
        <context>AAAGAAATTG[A/T]TGAGATCACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTATTCTTTTCGTTTAATCATCATTCATTTGAGAAAAAAAAAGAAATTG</left_flank>
        <right_flank>TGAGATCACAAAGAGTCAGCTGACTTCTCCACCAGTTGTTCAATCCCAAG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTTTCAAATAGCCCATGCTTCTCCAAATCTAGCTTTCTCCCTTTTTATGATCCCAGATCTCAGCTAGCTTTCCTTCTTTTCTCTATTCCCAGAAAGAATAAAGACCCGGGCAGATGGGCTCCAGATAGTCAAGAAGGGGGAAAGTGATTAATTAGTTTGTGGTGGGACGACAATAAAAGAAAGCGGAGGACTGACGAATTGTTGGTCCAATTTGAAAGAGTAGCAAGCCAAAAGTTGTCCCAATTTTCTCGAATTGATCAATTTTTGATGGATTGGAAGAAGTGTTCGTTAGTGCTGAACATTCTAAACGAAGAAAAAACTACTGCAAATTCCCTAGAGATCTTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCTAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTATTCTTTTCGTTTAATCATCATTCATTTGAGAAAAAAAAAGAAATTGATGAGATCACAAAGAGTCAGCTGACTTCTCCACCAGTTGTTCAATCCCAAGCCCCCAATTCTTTTCATTCTTTTCTCAAGCTGCTCTATCTGGCAAAAAGGAAGGAAGGAGACGAAAAAGGAGTGCCGATTGTGTTTGTTGCCTTGTGACTCTGTGAACTGAACGACCATCTGCCAGTACTCTCTTCCGGGGCGACGACACTTGAAGAAAATCAAAGAGCAACGACAAGAGATACATTCGATTAGAATGATCCTAGAAGACGTGCTTTTTCAGATCCCAATCTGTGGTAAGAAACACCAAGGATTCCTCGAAGTCATCAGAAATCGAAGAGAGACGAGAAGTTCACTTTTTGCAGGAGGGGTATCGCATTTCTTGTCTATTCTAAACTCTAAACTTTCATGTAAACTGATATTTTGATTCCAATTTTTTGTTATTGTTATAAAGCAAAGTGCAATTTGGTTCTACACACACAAAGAACGGCTCCTGGACGTTTCAGGACAT</canonical>
            <polymorphic>CATTTTTCAAATAGCCCATGCTTCTCCAAATCTAGCTTTCTCCCTTTTTATGATCCCAGATCTCAGCTAGCTTTCCTTCTTTTCTCTATTCCCAGAAAGAATAAAGACCCGGGCAGATGGGCTCCAGATAGTCAAGAAGGGGGAAAGTGATTAATTAGTTTGTGGTGGGACGACAATAAAAGAAAGCGGAGGACTGACGAATTGTTGGTCCAATTTGAAAGAGTAGCAAGCCAAAAGTTGTCCCAATTTTCTCGAATTGATCAATTTTTGATGGATTGGAAGAAGTGTTCGTTAGTGCTGAACATTCTAAACGAAGAAAAAACTACTGCAAATTCCCTAGAGATCTTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCTAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTATTCTTTTCGTTTAATCATCATTCATTTGAGAAAAAAAAAGAAATTGWTGAGATCACAAAGAGTCAGCTGACTTCTCCACCAGTTGTTCAATCCCAAGCCCCCAATTCTTTTCATTCTTTTCTCAAGCTGCTCTATCTGGCAAAAAGGAAGGAAGGAGACGAAAAAGGAGTGCCGATTGTGTTTGTTGCCTTGTGACTCTGTGAACTGAACGACCATCTGCCAGTACTCTCTTCCGGGGCGACGACACTTGAAGAAAATCAAAGAGCAACGACAAGAGATACATTCGATTAGAATGATCCTAGAAGACGTGCTTTTTCAGATCCCAATCTGTGGTAAGAAACACCAAGGATTCCTCGAAGTCATCAGAAATCGAAGAGAGACGAGAAGTTCACTTTTTGCAGGAGGGGTATCGCATTTCTTGTCTATTCTAAACTCTAAACTTTCATGTAAACTGATATTTTGATTCCAATTTTTTGTTATTGTTATAAAGCAAAGTGCAATTTGGTTCTACACACACAAAGAACGGCTCCTGGACGTTTCAGGACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTTCCAAAGTAAGACTCCT</pcr_primer_p1>
		<pcr_primer_p2>ATAGAGCAGCTTGAGAAAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCTAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTATTCTTTTCGTTTAATCATCATTCATTTGAGAAAAAAAAAGAAATTGATGAGATCACAAAGAGTCAGCTGACTTCTCCACCAGTTGTTCAATCCCAAGCCCCCAATTCTTTTCATTCTTTTCTCAAGCTGCTCTAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCTAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTATTCTTTTCGTTTAATCATCATTCATTTGAGAAAAAAAAAGAAATTGWTGAGATCACAAAGAGTCAGCTGACTTCTCCACCAGTTGTTCAATCCCAAGCCCCCAATTCTTTTCATTCTTTTCTCAAGCTGCTCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19347</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>342159</contig_pos>
        <strand></strand>
        <context>cggaattttt[C/T]ggaaaakaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTTCAAATTCTGACCGGATTTTTTCTGAGTTTTCTTCGGAATTTTT</left_flank>
        <right_flank>GGAAAAGAAATAGATTTTAGACTACGGTATTTCAAAGGCGCATGCGAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAGAACAGAGAATTCTTTCAAAATGATTTCACGGAAAGGAGAGCTAAAAATAAAGGAAGACAACTGATTCAACAAAGAAGGAGAAGTAGTTTTTGACTGGGCTTTTTTTTTAATTCCAGGCTTGGGCTAAAAAAATGAAATCAAAAAACCACAAAAAACGATGCTCGTGTTGATTTACGAGGCCCCGCCCCCAAATCCGATATTGTCATGAGCGAAATTAATTTCTGTAAATTTTGTGGGATTTTCTGGACCGAATTCAGATTTTTTTTGGTGAAAATATGATCGCTAGCATCTCTAGAATCCATTTTTTATTGAAAAACCAAACTTTTTTCGCGAAAAACGTCGAAACGAGGCAAAAATCTATAATATTCTGATTTTGCCACGCCGCCTCAAATTAAGACTATTTTTGGTATGGAATTCCGACCGGAAAATTTTTCTTTCGAAGCTTTTTTTTCAAATTCTGACCGGATTTTTTCTGAGTTTTCTTCGGAATTTTTCGGAAAAGAAATAGATTTTAGACTACGGTATTTCAAAGGCGCATGCGAAAAGTTCTCTAGCGGTTTCGAGCGGAACTATTTTACAGTAGTTTTTTTTGCATTTTCGAACTTTTTGGCAATTTTCCACCAATTTTTTTGCGATTTTGTGATCTGAAAATGCGATTTTTAAGTTAAAAGTTTAATTTTAAAAAATTCCGGTTTTTTGAAAATCGGAATTTTCGACAAACTTACACGATGCATGCATTTTTTTGAGCAGAACTAAGCAGACGAACTAGTTAAATGAAAATGCGAAAGTGTCAACTCATTGCTCCTAGACCTCCATCCCCTTTCCCCCAAACAAATTGAATTTCGTTCAATTTACACAATCTTGGTCGATGAGCTCATCTTTTTTTGTTACTTCTCTTTCACGACTTTTGACTCAAGAGTTGTTTATGTTTATCGAGGAGAAAACGGAATATTATACAAGATTGTGACAATGAGGATCAGGATAGAAGAGAAAGC</canonical>
            <polymorphic>TGAAGAACAGAGAATTCTTTCAAAATGATTTCACGGAAAGGAGAGCTAAAAATAAAGGAAGACAACTGATTCAACAAAGAAGGAGAAGTAGTTTTTGACTGGGCTTTTTTTTTAATTCCAGGCTTGGGCTAAAAAAATGAAATCAAAAAACCACAAAAAACGATGCTCGTGTTGATTTACGAGGCCCCGCCCCCAAATCCGATATTGTCATGAGCGAAATTAATTTCTGTAAATTTTGTGGGATTTTCTGGACCGAATTCAGATTTTTTTTGGTGAAAATATGATCGCTAGCATCTCTAGAATCCATTTTTTATTGAAAAACCAAACTTTTTTCGCGAAAAACGTCGAAACGAGGCAAAAATCTATAATATTCTGATTTTGCCACGCCGCCTCAAATTAAGACTATTTTTGGTATGGAATTCCGACCGGAAAATTTTTCTTTCGAAGCTTTTTTTTCAAATTCTGACCGGATTTTTTCTGAGTTTTCTTCGGAATTTTTYGGAAAAGAAATAGATTTTAGACTACGGTATTTCAAAGGCGCATGCGAAAAGTTCTCTAGCGGTTTCGAGCGGAACTATTTTACAGTAGTTTTTTTTGCATTTTCGAACTTTTTGGCAATTTTCCACCAATTTTTTTGCGATTTTGTGATCTGAAAATGCGATTTTTAAGTTAAAAGTTTAATTTTAAAAAATTCCGGTTTTTTGAAAATCGGAATTTTCGACAAACTTACACGATGCATGCATTTTTTTGAGCAGAACTAAGCAGACGAACTAGTTAAATGAAAATGCGAAAGTGTCAACTCATTGCTCCTAGACCTCCATCCCCTTTCCCCCAAACAAATTGAATTTCGTTCAATTTACACAATCTTGGTCGATGAGCTCATCTTTTTTTGTTACTTCTCTTTCACGACTTTTGACTCAAGAGTTGTTTATGTTTATCGAGGAGAAAACGGAATATTATACAAGATTGTGACAATGAGGATCAGGATAGAAGAGAAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>289 200 150 113 61 60 49 41 15 12 10</canonical_bands>
                <polymorphic_bands>289 200 160 113 61 60 49 41 15 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGTTTTTGACTGGGCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTCTGCTTAGTTCTGCTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>679</pcr_amplicon_size>
		<canonical_amplicon>TAGTTTTTGACTGGGCTTTTTTTTTAATTCCAGGCTTGGGCTAAAAAAATGAAATCAAAAAACCACAAAAAACGATGCTCGTGTTGATTTACGAGGCCCCGCCCCCAAATCCGATATTGTCATGAGCGAAATTAATTTCTGTAAATTTTGTGGGATTTTCTGGACCGAATTCAGATTTTTTTTGGTGAAAATATGATCGCTAGCATCTCTAGAATCCATTTTTTATTGAAAAACCAAACTTTTTTCGCGAAAAACGTCGAAACGAGGCAAAAATCTATAATATTCTGATTTTGCCACGCCGCCTCAAATTAAGACTATTTTTGGTATGGAATTCCGACCGGAAAATTTTTCTTTCGAAGCTTTTTTTTCAAATTCTGACCGGATTTTTTCTGAGTTTTCTTCGGAATTTTTCGGAAAAGAAATAGATTTTAGACTACGGTATTTCAAAGGCGCATGCGAAAAGTTCTCTAGCGGTTTCGAGCGGAACTATTTTACAGTAGTTTTTTTTGCATTTTCGAACTTTTTGGCAATTTTCCACCAATTTTTTTGCGATTTTGTGATCTGAAAATGCGATTTTTAAGTTAAAAGTTTAATTTTAAAAAATTCCGGTTTTTTGAAAATCGGAATTTTCGACAAACTTACACGATGCATGCATTTTTTTGAGCAGAACTAAGCAGAC</canonical_amplicon>
		<polymorphic_amplicon>TAGTTTTTGACTGGGCTTTTTTTTTAATTCCAGGCTTGGGCTAAAAAAATGAAATCAAAAAACCACAAAAAACGATGCTCGTGTTGATTTACGAGGCCCCGCCCCCAAATCCGATATTGTCATGAGCGAAATTAATTTCTGTAAATTTTGTGGGATTTTCTGGACCGAATTCAGATTTTTTTTGGTGAAAATATGATCGCTAGCATCTCTAGAATCCATTTTTTATTGAAAAACCAAACTTTTTTCGCGAAAAACGTCGAAACGAGGCAAAAATCTATAATATTCTGATTTTGCCACGCCGCCTCAAATTAAGACTATTTTTGGTATGGAATTCCGACCGGAAAATTTTTCTTTCGAAGCTTTTTTTTCAAATTCTGACCGGATTTTTTCTGAGTTTTCTTCGGAATTTTTYGGAAAAGAAATAGATTTTAGACTACGGTATTTCAAAGGCGCATGCGAAAAGTTCTCTAGCGGTTTCGAGCGGAACTATTTTACAGTAGTTTTTTTTGCATTTTCGAACTTTTTGGCAATTTTCCACCAATTTTTTTGCGATTTTGTGATCTGAAAATGCGATTTTTAAGTTAAAAGTTTAATTTTAAAAAATTCCGGTTTTTTGAAAATCGGAATTTTCGACAAACTTACACGATGCATGCATTTTTTTGAGCAGAACTAAGCAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19348</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>342166</contig_pos>
        <strand></strand>
        <context>tttyggaaaa[G/T]aaatagattt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAAATTCTGACCGGATTTTTTCTGAGTTTTCTTCGGAATTTTTCGGAAAA</left_flank>
        <right_flank>AAATAGATTTTAGACTACGGTATTTCAAAGGCGCATGCGAAAAGTTCTCT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAGAATTCTTTCAAAATGATTTCACGGAAAGGAGAGCTAAAAATAAAGGAAGACAACTGATTCAACAAAGAAGGAGAAGTAGTTTTTGACTGGGCTTTTTTTTTAATTCCAGGCTTGGGCTAAAAAAATGAAATCAAAAAACCACAAAAAACGATGCTCGTGTTGATTTACGAGGCCCCGCCCCCAAATCCGATATTGTCATGAGCGAAATTAATTTCTGTAAATTTTGTGGGATTTTCTGGACCGAATTCAGATTTTTTTTGGTGAAAATATGATCGCTAGCATCTCTAGAATCCATTTTTTATTGAAAAACCAAACTTTTTTCGCGAAAAACGTCGAAACGAGGCAAAAATCTATAATATTCTGATTTTGCCACGCCGCCTCAAATTAAGACTATTTTTGGTATGGAATTCCGACCGGAAAATTTTTCTTTCGAAGCTTTTTTTTCAAATTCTGACCGGATTTTTTCTGAGTTTTCTTCGGAATTTTTCGGAAAAGAAATAGATTTTAGACTACGGTATTTCAAAGGCGCATGCGAAAAGTTCTCTAGCGGTTTCGAGCGGAACTATTTTACAGTAGTTTTTTTTGCATTTTCGAACTTTTTGGCAATTTTCCACCAATTTTTTTGCGATTTTGTGATCTGAAAATGCGATTTTTAAGTTAAAAGTTTAATTTTAAAAAATTCCGGTTTTTTGAAAATCGGAATTTTCGACAAACTTACACGATGCATGCATTTTTTTGAGCAGAACTAAGCAGACGAACTAGTTAAATGAAAATGCGAAAGTGTCAACTCATTGCTCCTAGACCTCCATCCCCTTTCCCCCAAACAAATTGAATTTCGTTCAATTTACACAATCTTGGTCGATGAGCTCATCTTTTTTTGTTACTTCTCTTTCACGACTTTTGACTCAAGAGTTGTTTATGTTTATCGAGGAGAAAACGGAATATTATACAAGATTGTGACAATGAGGATCAGGATAGAAGAGAAAGCGTGTAAA</canonical>
            <polymorphic>CAGAGAATTCTTTCAAAATGATTTCACGGAAAGGAGAGCTAAAAATAAAGGAAGACAACTGATTCAACAAAGAAGGAGAAGTAGTTTTTGACTGGGCTTTTTTTTTAATTCCAGGCTTGGGCTAAAAAAATGAAATCAAAAAACCACAAAAAACGATGCTCGTGTTGATTTACGAGGCCCCGCCCCCAAATCCGATATTGTCATGAGCGAAATTAATTTCTGTAAATTTTGTGGGATTTTCTGGACCGAATTCAGATTTTTTTTGGTGAAAATATGATCGCTAGCATCTCTAGAATCCATTTTTTATTGAAAAACCAAACTTTTTTCGCGAAAAACGTCGAAACGAGGCAAAAATCTATAATATTCTGATTTTGCCACGCCGCCTCAAATTAAGACTATTTTTGGTATGGAATTCCGACCGGAAAATTTTTCTTTCGAAGCTTTTTTTTCAAATTCTGACCGGATTTTTTCTGAGTTTTCTTCGGAATTTTTCGGAAAAKAAATAGATTTTAGACTACGGTATTTCAAAGGCGCATGCGAAAAGTTCTCTAGCGGTTTCGAGCGGAACTATTTTACAGTAGTTTTTTTTGCATTTTCGAACTTTTTGGCAATTTTCCACCAATTTTTTTGCGATTTTGTGATCTGAAAATGCGATTTTTAAGTTAAAAGTTTAATTTTAAAAAATTCCGGTTTTTTGAAAATCGGAATTTTCGACAAACTTACACGATGCATGCATTTTTTTGAGCAGAACTAAGCAGACGAACTAGTTAAATGAAAATGCGAAAGTGTCAACTCATTGCTCCTAGACCTCCATCCCCTTTCCCCCAAACAAATTGAATTTCGTTCAATTTACACAATCTTGGTCGATGAGCTCATCTTTTTTTGTTACTTCTCTTTCACGACTTTTGACTCAAGAGTTGTTTATGTTTATCGAGGAGAAAACGGAATATTATACAAGATTGTGACAATGAGGATCAGGATAGAAGAGAAAGCGTGTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTTTTTGACTGGGCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTCTGCTTAGTTCTGCTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>679</pcr_amplicon_size>
		<canonical_amplicon>TAGTTTTTGACTGGGCTTTTTTTTTAATTCCAGGCTTGGGCTAAAAAAATGAAATCAAAAAACCACAAAAAACGATGCTCGTGTTGATTTACGAGGCCCCGCCCCCAAATCCGATATTGTCATGAGCGAAATTAATTTCTGTAAATTTTGTGGGATTTTCTGGACCGAATTCAGATTTTTTTTGGTGAAAATATGATCGCTAGCATCTCTAGAATCCATTTTTTATTGAAAAACCAAACTTTTTTCGCGAAAAACGTCGAAACGAGGCAAAAATCTATAATATTCTGATTTTGCCACGCCGCCTCAAATTAAGACTATTTTTGGTATGGAATTCCGACCGGAAAATTTTTCTTTCGAAGCTTTTTTTTCAAATTCTGACCGGATTTTTTCTGAGTTTTCTTCGGAATTTTTCGGAAAAGAAATAGATTTTAGACTACGGTATTTCAAAGGCGCATGCGAAAAGTTCTCTAGCGGTTTCGAGCGGAACTATTTTACAGTAGTTTTTTTTGCATTTTCGAACTTTTTGGCAATTTTCCACCAATTTTTTTGCGATTTTGTGATCTGAAAATGCGATTTTTAAGTTAAAAGTTTAATTTTAAAAAATTCCGGTTTTTTGAAAATCGGAATTTTCGACAAACTTACACGATGCATGCATTTTTTTGAGCAGAACTAAGCAGAC</canonical_amplicon>
		<polymorphic_amplicon>TAGTTTTTGACTGGGCTTTTTTTTTAATTCCAGGCTTGGGCTAAAAAAATGAAATCAAAAAACCACAAAAAACGATGCTCGTGTTGATTTACGAGGCCCCGCCCCCAAATCCGATATTGTCATGAGCGAAATTAATTTCTGTAAATTTTGTGGGATTTTCTGGACCGAATTCAGATTTTTTTTGGTGAAAATATGATCGCTAGCATCTCTAGAATCCATTTTTTATTGAAAAACCAAACTTTTTTCGCGAAAAACGTCGAAACGAGGCAAAAATCTATAATATTCTGATTTTGCCACGCCGCCTCAAATTAAGACTATTTTTGGTATGGAATTCCGACCGGAAAATTTTTCTTTCGAAGCTTTTTTTTCAAATTCTGACCGGATTTTTTCTGAGTTTTCTTCGGAATTTTTCGGAAAAKAAATAGATTTTAGACTACGGTATTTCAAAGGCGCATGCGAAAAGTTCTCTAGCGGTTTCGAGCGGAACTATTTTACAGTAGTTTTTTTTGCATTTTCGAACTTTTTGGCAATTTTCCACCAATTTTTTTGCGATTTTGTGATCTGAAAATGCGATTTTTAAGTTAAAAGTTTAATTTTAAAAAATTCCGGTTTTTTGAAAATCGGAATTTTCGACAAACTTACACGATGCATGCATTTTTTTGAGCAGAACTAAGCAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19349</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>344468</contig_pos>
        <strand></strand>
        <context>GAAGAAGCTT[A/G]CGGCTCCTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGATGAAGAAACTCCGATCATCAGAATCATCATCAGGAAGAAGAAGCTT</left_flank>
        <right_flank>CGGCTCCTGCACAAACTCTGTATACTGCCTGATATCCAATCGCATGCTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAACCGAAAGAATGCTAATCGCAACACAAATAAGAACATTGACGATTATAAAGAACTTCGGAAGACCACATCCATCTCCAATCGCGTAGTTTAGAAATACGTATCCAGCGGCAATGAGACATAACAAGAATCCTCCGAATGTGGTGACAAGAAGTCCGGCGTAACAAGCACGAGAGTCGTTGTCTTCGTATTGAGAAACCCAAGATTCGGCGAGTCCGTGAGCAAAGTCAACGATCAGAATCAGTTGGATAAGGATGAACAAGAAAGCGCCGAGCATTCCGATGTACATGAGAGCTGGAAAAGATATAATTCATTGAGATTTCGAATTTTAAGACTAACGAGTAGCAAGGCTTTCACTTCCGATGAAAAAGTATCCGGTGATAATTCCAAACATCAAAATGTATTTGAAGAACCAGAAACCGTTTTGAATTGAAGAACGACCGTCTTTAGATGAAGAAACTCCGATCATCAGAATCATCATCAGGAAGAAGAAGCTTACGGCTCCTGCACAAACTCTGTATACTGCCTGATATCCAATCGCATGCTGACAATTCACCCCCGCATAGTCGCATAACCATTTGTTCTGAAATTCATTAAAAAAATATTGATTTTCTATTGCTAATCCTTACATCAACTAATTTCTGTTGAACACCGGGAAGAAGCATCATTACAGCGATGAAAGTCGCTGAAATCAGCATTAACGCGTACATGATCCTCGTCGTCGTCGAATTCTTCGCTCCCGGACATGCTGAGCAGCAGAGTGAGCACGCGGCGCTTCCGAAGCAGCACGCTGCCTGGAAATTCACTTTTCAGAGATATTCAGTTCAGAGATCTTCATTTACCGGAGCTGCGCAAAACGGTGCTGCTAGCAACGCACCCATCAAAAATTGATTTTGGCTAGAGTTCCAGAGACAGAGAACCGGTAAGTCGCGTGAGCCGAGAGGCAGAGAGCTGTCTGAAAGGAAAAAAGTAGAACGGCAGAGCGCGTTTGCTATGTT</canonical>
            <polymorphic>AGAAACCGAAAGAATGCTAATCGCAACACAAATAAGAACATTGACGATTATAAAGAACTTCGGAAGACCACATCCATCTCCAATCGCGTAGTTTAGAAATACGTATCCAGCGGCAATGAGACATAACAAGAATCCTCCGAATGTGGTGACAAGAAGTCCGGCGTAACAAGCACGAGAGTCGTTGTCTTCGTATTGAGAAACCCAAGATTCGGCGAGTCCGTGAGCAAAGTCAACGATCAGAATCAGTTGGATAAGGATGAACAAGAAAGCGCCGAGCATTCCGATGTACATGAGAGCTGGAAAAGATATAATTCATTGAGATTTCGAATTTTAAGACTAACGAGTAGCAAGGCTTTCACTTCCGATGAAAAAGTATCCGGTGATAATTCCAAACATCAAAATGTATTTGAAGAACCAGAAACCGTTTTGAATTGAAGAACGACCGTCTTTAGATGAAGAAACTCCGATCATCAGAATCATCATCAGGAAGAAGAAGCTTRCGGCTCCTGCACAAACTCTGTATACTGCCTGATATCCAATCGCATGCTGACAATTCACCCCCGCATAGTCGCATAACCATTTGTTCTGAAATTCATTAAAAAAATATTGATTTTCTATTGCTAATCCTTACATCAACTAATTTCTGTTGAACACCGGGAAGAAGCATCATTACAGCGATGAAAGTCGCTGAAATCAGCATTAACGCGTACATGATCCTCGTCGTCGTCGAATTCTTCGCTCCCGGACATGCTGAGCAGCAGAGTGAGCACGCGGCGCTTCCGAAGCAGCACGCTGCCTGGAAATTCACTTTTCAGAGATATTCAGTTCAGAGATCTTCATTTACCGGAGCTGCGCAAAACGGTGCTGCTAGCAACGCACCCATCAAAAATTGATTTTGGCTAGAGTTCCAGAGACAGAGAACCGGTAAGTCGCGTGAGCCGAGAGGCAGAGAGCTGTCTGAAAGGAAAAAAGTAGAACGGCAGAGCGCGTTTGCTATGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGATAATTCCAAACATCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAGGATTAGCAATAGAAAATCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGATAATTCCAAACATCAAAATGTATTTGAAGAACCAGAAACCGTTTTGAATTGAAGAACGACCGTCTTTAGATGAAGAAACTCCGATCATCAGAATCATCATCAGGAAGAAGAAGCTTACGGCTCCTGCACAAACTCTGTATACTGCCTGATATCCAATCGCATGCTGACAATTCACCCCCGCATAGTCGCATAACCATTTGTTCTGAAATTCATTAAAAAAATATTGATTTTCTATTGCTAATCCTT</canonical_amplicon>
		<polymorphic_amplicon>GTGATAATTCCAAACATCAAAATGTATTTGAAGAACCAGAAACCGTTTTGAATTGAAGAACGACCGTCTTTAGATGAAGAAACTCCGATCATCAGAATCATCATCAGGAAGAAGAAGCTTRCGGCTCCTGCACAAACTCTGTATACTGCCTGATATCCAATCGCATGCTGACAATTCACCCCCGCATAGTCGCATAACCATTTGTTCTGAAATTCATTAAAAAAATATTGATTTTCTATTGCTAATCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19350</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>344320</contig_pos>
        <strand></strand>
        <context>GAGTAGCAAG[G/A]CTTTCACTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAGATATAATTCATTGAGATTTCGAATTTTAAGACTAACGAGTAGCAAG</left_flank>
        <right_flank>CTTTCACTTCCGATGAAAAAGTATCCGGTGATAATTCCAAACATCAAAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCTCCACAGCTTTAGAACAAAACATTTTTTTACTGAAACTCACTGGGATTGCTCAACAGCGCCGACCATGTCAAATAAATGATGTAACCACTGATAACAACTGCTTGTAGAAGCCCAGAACGTGGCATCACTTCTTGAACCATTGGAGAAACCGAAAGAATGCTAATCGCAACACAAATAAGAACATTGACGATTATAAAGAACTTCGGAAGACCACATCCATCTCCAATCGCGTAGTTTAGAAATACGTATCCAGCGGCAATGAGACATAACAAGAATCCTCCGAATGTGGTGACAAGAAGTCCGGCGTAACAAGCACGAGAGTCGTTGTCTTCGTATTGAGAAACCCAAGATTCGGCGAGTCCGTGAGCAAAGTCAACGATCAGAATCAGTTGGATAAGGATGAACAAGAAAGCGCCGAGCATTCCGATGTACATGAGAGCTGGAAAAGATATAATTCATTGAGATTTCGAATTTTAAGACTAACGAGTAGCAAGGCTTTCACTTCCGATGAAAAAGTATCCGGTGATAATTCCAAACATCAAAATGTATTTGAAGAACCAGAAACCGTTTTGAATTGAAGAACGACCGTCTTTAGATGAAGAAACTCCGATCATCAGAATCATCATCAGGAAGAAGAAGCTTACGGCTCCTGCACAAACTCTGTATACTGCCTGATATCCAATCGCATGCTGACAATTCACCCCCGCATAGTCGCATAACCATTTGTTCTGAAATTCATTAAAAAAATATTGATTTTCTATTGCTAATCCTTACATCAACTAATTTCTGTTGAACACCGGGAAGAAGCATCATTACAGCGATGAAAGTCGCTGAAATCAGCATTAACGCGTACATGATCCTCGTCGTCGTCGAATTCTTCGCTCCCGGACATGCTGAGCAGCAGAGTGAGCACGCGGCGCTTCCGAAGCAGCACGCTGCCTGGAAATTCACTTTTCAGAGATATTCAGTTCAGAGATCTTCATTTACCGGAGCTG</canonical>
            <polymorphic>CTTCTCCACAGCTTTAGAACAAAACATTTTTTTACTGAAACTCACTGGGATTGCTCAACAGCGCCGACCATGTCAAATAAATGATGTAACCACTGATAACAACTGCTTGTAGAAGCCCAGAACGTGGCATCACTTCTTGAACCATTGGAGAAACCGAAAGAATGCTAATCGCAACACAAATAAGAACATTGACGATTATAAAGAACTTCGGAAGACCACATCCATCTCCAATCGCGTAGTTTAGAAATACGTATCCAGCGGCAATGAGACATAACAAGAATCCTCCGAATGTGGTGACAAGAAGTCCGGCGTAACAAGCACGAGAGTCGTTGTCTTCGTATTGAGAAACCCAAGATTCGGCGAGTCCGTGAGCAAAGTCAACGATCAGAATCAGTTGGATAAGGATGAACAAGAAAGCGCCGAGCATTCCGATGTACATGAGAGCTGGAAAAGATATAATTCATTGAGATTTCGAATTTTAAGACTAACGAGTAGCAAGRCTTTCACTTCCGATGAAAAAGTATCCGGTGATAATTCCAAACATCAAAATGTATTTGAAGAACCAGAAACCGTTTTGAATTGAAGAACGACCGTCTTTAGATGAAGAAACTCCGATCATCAGAATCATCATCAGGAAGAAGAAGCTTACGGCTCCTGCACAAACTCTGTATACTGCCTGATATCCAATCGCATGCTGACAATTCACCCCCGCATAGTCGCATAACCATTTGTTCTGAAATTCATTAAAAAAATATTGATTTTCTATTGCTAATCCTTACATCAACTAATTTCTGTTGAACACCGGGAAGAAGCATCATTACAGCGATGAAAGTCGCTGAAATCAGCATTAACGCGTACATGATCCTCGTCGTCGTCGAATTCTTCGCTCCCGGACATGCTGAGCAGCAGAGTGAGCACGCGGCGCTTCCGAAGCAGCACGCTGCCTGGAAATTCACTTTTCAGAGATATTCAGTTCAGAGATCTTCATTTACCGGAGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>346 329 144 104 56 11 7 3</canonical_bands>
                <polymorphic_bands>346 329 200 104 11 7 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGAGAGCTGGAAAAGATATAA</pcr_primer_p1>
		<pcr_primer_p2>TGGATATCAGGCAGTATACAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATGAGAGCTGGAAAAGATATAATTCATTGAGATTTCGAATTTTAAGACTAACGAGTAGCAAGGCTTTCACTTCCGATGAAAAAGTATCCGGTGATAATTCCAAACATCAAAATGTATTTGAAGAACCAGAAACCGTTTTGAATTGAAGAACGACCGTCTTTAGATGAAGAAACTCCGATCATCAGAATCATCATCAGGAAGAAGAAGCTTACGGCTCCTGCACAAACTCTGTATACTGCCTGATATCCA</canonical_amplicon>
		<polymorphic_amplicon>CATGAGAGCTGGAAAAGATATAATTCATTGAGATTTCGAATTTTAAGACTAACGAGTAGCAAGRCTTTCACTTCCGATGAAAAAGTATCCGGTGATAATTCCAAACATCAAAATGTATTTGAAGAACCAGAAACCGTTTTGAATTGAAGAACGACCGTCTTTAGATGAAGAAACTCCGATCATCAGAATCATCATCAGGAAGAAGAAGCTTACGGCTCCTGCACAAACTCTGTATACTGCCTGATATCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19351</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>356705</contig_pos>
        <strand>+</strand>
        <context>CTAGTTCGAA[A/G]TTCAAGAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTTTTTCCAAAAATTTTCATTCAAATTTTTGGCGAATTCTAGTTCGAA</left_flank>
        <right_flank>TTCAAGAAAAACATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCAACCCCACCAATGTATCAATTTTTGTTGTGAGGGTGGTAGGGGGAAGAGAAGAAAAAGAAGCAAAAAGACAAAATATACAAACTGATGGAGTTGAAAAGAAGCAAAGAAGGAGGTACCATCAGTTGAGATAACAAGCCAAAGGATCCCTCTTTCTTGCTCTTCGTCGCCCCGACTGATATTGGTATCTAGGGAATTCCCGCGCTCTTCCAAAAAAGATGTATTCTTTTCTCGTTGTCTTCTCGTTTTAGATATTTGCATTCTTTCACACACCAAAACCGAATTCTTTGTTTTTGCACTTTTTTCTGGAGAAATTTTGGAGATATGTATCCCAGTTCAGCTTTGCAAAGTTTTAGTGTTTTTTATTCGATTCAATTCGAATTTATAGGAATTTGTTGTTCTTCAATTTTCGAAATGGTTTCCAATTAGAGTCCGTCTATTTTCCAGACATTTTTTCCAAAAATTTTCATTCAAATTTTTGGCGAATTCTAGTTCGAAGTTCAAGAAAAACATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGA</canonical>
            <polymorphic>CGCAACCCCACCAATGTATCAATTTTTGTTGTGAGGGTGGTAGGGGGAAGAGAAGAAAAAGAAGCAAAAAGACAAAATATACAAACTGATGGAGTTGAAAAGAAGCAAAGAAGGAGGTACCATCAGTTGAGATAACAAGCCAAAGGATCCCTCTTTCTTGCTCTTCGTCGCCCCGACTGATATTGGTATCTAGGGAATTCCCGCGCTCTTCCAAAAAAGATGTATTCTTTTCTCGTTGTCTTCTCGTTTTAGATATTTGCATTCTTTCACACACCAAAACCGAATTCTTTGTTTTTGCACTTTTTTCTGGAGAAATTTTGGAGATATGTATCCCAGTTCAGCTTTGCAAAGTTTTAGTGTTTTTTATTCGATTCAATTCGAATTTATAGGAATTTGTTGTTCTTCAATTTTCGAAATGGTTTCCAATTAGAGTCCGTCTATTTTCCAGACATTTTTTCCAAAAATTTTCATTCAAATTTTTGGCGAATTCTAGTTCGAARTTCAAGAAAAACATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGGAGAAATTTTGGAGATATG</pcr_primer_p1>
		<pcr_primer_p2>TCAGTGATAAACATTCCAGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTGGAGAAATTTTGGAGATATGTATCCCAGTTCAGCTTTGCAAAGTTTTAGTGTTTTTTATTCGATTCAATTCGAATTTATAGGAATTTGTTGTTCTTCAATTTTCGAAATGGTTTCCAATTAGAGTCCGTCTATTTTCCAGACATTTTTTCCAAAAATTTTCATTCAAATTTTTGGCGAATTCTAGTTCGAAGTTCAAGAAAAACATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGA</canonical_amplicon>
		<polymorphic_amplicon>CTGGAGAAATTTTGGAGATATGTATCCCAGTTCAGCTTTGCAAAGTTTTAGTGTTTTTTATTCGATTCAATTCGAATTTATAGGAATTTGTTGTTCTTCAATTTTCGAAATGGTTTCCAATTAGAGTCCGTCTATTTTCCAGACATTTTTTCCAAAAATTTTCATTCAAATTTTTGGCGAATTCTAGTTCGAARTTCAAGAAAAACATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19352</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>356827</contig_pos>
        <strand>+</strand>
        <context>TTAGAGCGAT[C/T]CTTCGATTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGAT</left_flank>
        <right_flank>CTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGTTGAGATAACAAGCCAAAGGATCCCTCTTTCTTGCTCTTCGTCGCCCCGACTGATATTGGTATCTAGGGAATTCCCGCGCTCTTCCAAAAAAGATGTATTCTTTTCTCGTTGTCTTCTCGTTTTAGATATTTGCATTCTTTCACACACCAAAACCGAATTCTTTGTTTTTGCACTTTTTTCTGGAGAAATTTTGGAGATATGTATCCCAGTTCAGCTTTGCAAAGTTTTAGTGTTTTTTATTCGATTCAATTCGAATTTATAGGAATTTGTTGTTCTTCAATTTTCGAAATGGTTTCCAATTAGAGTCCGTCTATTTTCCAGACATTTTTTCCAAAAATTTTCATTCAAATTTTTGGCGAATTCTAGTTCGAAGTTCAAGAAAAACATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATAC</canonical>
            <polymorphic>TCAGTTGAGATAACAAGCCAAAGGATCCCTCTTTCTTGCTCTTCGTCGCCCCGACTGATATTGGTATCTAGGGAATTCCCGCGCTCTTCCAAAAAAGATGTATTCTTTTCTCGTTGTCTTCTCGTTTTAGATATTTGCATTCTTTCACACACCAAAACCGAATTCTTTGTTTTTGCACTTTTTTCTGGAGAAATTTTGGAGATATGTATCCCAGTTCAGCTTTGCAAAGTTTTAGTGTTTTTTATTCGATTCAATTCGAATTTATAGGAATTTGTTGTTCTTCAATTTTCGAAATGGTTTCCAATTAGAGTCCGTCTATTTTCCAGACATTTTTTCCAAAAATTTTCATTCAAATTTTTGGCGAATTCTAGTTCGAAGTTCAAGAAAAACATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATYCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>248 198 189 134 104 67 60</canonical_bands>
                <polymorphic_bands>293 248 198 134 67 60</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>332 249 248 104 67</canonical_bands>
                <polymorphic_bands>353 332 248 67</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAATTTCACGATTATGGAGT</pcr_primer_p1>
		<pcr_primer_p2>TGATGGACCAAGATAGATAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCA</canonical_amplicon>
		<polymorphic_amplicon>ATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATYCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19353</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>356842</contig_pos>
        <strand>+</strand>
        <context>GATTAAAGAG[A/G]CTAAACAGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAG</left_flank>
        <right_flank>CTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCCAAAGGATCCCTCTTTCTTGCTCTTCGTCGCCCCGACTGATATTGGTATCTAGGGAATTCCCGCGCTCTTCCAAAAAAGATGTATTCTTTTCTCGTTGTCTTCTCGTTTTAGATATTTGCATTCTTTCACACACCAAAACCGAATTCTTTGTTTTTGCACTTTTTTCTGGAGAAATTTTGGAGATATGTATCCCAGTTCAGCTTTGCAAAGTTTTAGTGTTTTTTATTCGATTCAATTCGAATTTATAGGAATTTGTTGTTCTTCAATTTTCGAAATGGTTTCCAATTAGAGTCCGTCTATTTTCCAGACATTTTTTCCAAAAATTTTCATTCAAATTTTTGGCGAATTCTAGTTCGAAGTTCAAGAAAAACATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAA</canonical>
            <polymorphic>AGCCAAAGGATCCCTCTTTCTTGCTCTTCGTCGCCCCGACTGATATTGGTATCTAGGGAATTCCCGCGCTCTTCCAAAAAAGATGTATTCTTTTCTCGTTGTCTTCTCGTTTTAGATATTTGCATTCTTTCACACACCAAAACCGAATTCTTTGTTTTTGCACTTTTTTCTGGAGAAATTTTGGAGATATGTATCCCAGTTCAGCTTTGCAAAGTTTTAGTGTTTTTTATTCGATTCAATTCGAATTTATAGGAATTTGTTGTTCTTCAATTTTCGAAATGGTTTCCAATTAGAGTCCGTCTATTTTCCAGACATTTTTTCCAAAAATTTTCATTCAAATTTTTGGCGAATTCTAGTTCGAAGTTCAAGAAAAACATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGRCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>247 202 162 129 68 39 35 30 26 24 22 14 2</canonical_bands>
                <polymorphic_bands>247 202 162 129 68 61 39 30 24 22 14 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAATTTCACGATTATGGAGT</pcr_primer_p1>
		<pcr_primer_p2>TGATGGACCAAGATAGATAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCA</canonical_amplicon>
		<polymorphic_amplicon>ATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGRCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19354</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>356885</contig_pos>
        <strand>+</strand>
        <context>ACAAGATCTA[C/T]CGAGATTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTA</left_flank>
        <right_flank>CGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTGGTATCTAGGGAATTCCCGCGCTCTTCCAAAAAAGATGTATTCTTTTCTCGTTGTCTTCTCGTTTTAGATATTTGCATTCTTTCACACACCAAAACCGAATTCTTTGTTTTTGCACTTTTTTCTGGAGAAATTTTGGAGATATGTATCCCAGTTCAGCTTTGCAAAGTTTTAGTGTTTTTTATTCGATTCAATTCGAATTTATAGGAATTTGTTGTTCTTCAATTTTCGAAATGGTTTCCAATTAGAGTCCGTCTATTTTCCAGACATTTTTTCCAAAAATTTTCATTCAAATTTTTGGCGAATTCTAGTTCGAAGTTCAAGAAAAACATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATC</canonical>
            <polymorphic>TATTGGTATCTAGGGAATTCCCGCGCTCTTCCAAAAAAGATGTATTCTTTTCTCGTTGTCTTCTCGTTTTAGATATTTGCATTCTTTCACACACCAAAACCGAATTCTTTGTTTTTGCACTTTTTTCTGGAGAAATTTTGGAGATATGTATCCCAGTTCAGCTTTGCAAAGTTTTAGTGTTTTTTATTCGATTCAATTCGAATTTATAGGAATTTGTTGTTCTTCAATTTTCGAAATGGTTTCCAATTAGAGTCCGTCTATTTTCCAGACATTTTTTCCAAAAATTTTCATTCAAATTTTTGGCGAATTCTAGTTCGAAGTTCAAGAAAAACATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTAYCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>312 189 187 130 84 55 33 10</canonical_bands>
                <polymorphic_bands>367 189 187 130 84 33 10</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>377 144 138 127 122 58 18 16</canonical_bands>
                <polymorphic_bands>377 266 138 127 58 18 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAATTTCACGATTATGGAGT</pcr_primer_p1>
		<pcr_primer_p2>TGATGGACCAAGATAGATAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCA</canonical_amplicon>
		<polymorphic_amplicon>ATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTAYCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19355</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>356920</contig_pos>
        <strand>+</strand>
        <context>TGTGAAATTT[C/T]TYGGAGAGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTT</left_flank>
        <right_flank>TCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGATGTATTCTTTTCTCGTTGTCTTCTCGTTTTAGATATTTGCATTCTTTCACACACCAAAACCGAATTCTTTGTTTTTGCACTTTTTTCTGGAGAAATTTTGGAGATATGTATCCCAGTTCAGCTTTGCAAAGTTTTAGTGTTTTTTATTCGATTCAATTCGAATTTATAGGAATTTGTTGTTCTTCAATTTTCGAAATGGTTTCCAATTAGAGTCCGTCTATTTTCCAGACATTTTTTCCAAAAATTTTCATTCAAATTTTTGGCGAATTCTAGTTCGAAGTTCAAGAAAAACATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTG</canonical>
            <polymorphic>AAAGATGTATTCTTTTCTCGTTGTCTTCTCGTTTTAGATATTTGCATTCTTTCACACACCAAAACCGAATTCTTTGTTTTTGCACTTTTTTCTGGAGAAATTTTGGAGATATGTATCCCAGTTCAGCTTTGCAAAGTTTTAGTGTTTTTTATTCGATTCAATTCGAATTTATAGGAATTTGTTGTTCTTCAATTTTCGAAATGGTTTCCAATTAGAGTCCGTCTATTTTCCAGACATTTTTTCCAAAAATTTTCATTCAAATTTTTGGCGAATTCTAGTTCGAAGTTCAAGAAAAACATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTYTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATAGGTAAGAAGCCTGAAACAA</pcr_primer_p1>
		<pcr_primer_p2>TCGGTTAAAAACTGTAATTATTTG</pcr_primer_p2>
		<pcr_amplicon_size>184</pcr_amplicon_size>
		<canonical_amplicon>TATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGA</canonical_amplicon>
		<polymorphic_amplicon>TATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTYTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19356</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>356922</contig_pos>
        <strand>+</strand>
        <context>TGAAATTTYT[C/T]GGAGAGATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCT</left_flank>
        <right_flank>GGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATGTATTCTTTTCTCGTTGTCTTCTCGTTTTAGATATTTGCATTCTTTCACACACCAAAACCGAATTCTTTGTTTTTGCACTTTTTTCTGGAGAAATTTTGGAGATATGTATCCCAGTTCAGCTTTGCAAAGTTTTAGTGTTTTTTATTCGATTCAATTCGAATTTATAGGAATTTGTTGTTCTTCAATTTTCGAAATGGTTTCCAATTAGAGTCCGTCTATTTTCCAGACATTTTTTCCAAAAATTTTCATTCAAATTTTTGGCGAATTCTAGTTCGAAGTTCAAGAAAAACATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTT</canonical>
            <polymorphic>AGATGTATTCTTTTCTCGTTGTCTTCTCGTTTTAGATATTTGCATTCTTTCACACACCAAAACCGAATTCTTTGTTTTTGCACTTTTTTCTGGAGAAATTTTGGAGATATGTATCCCAGTTCAGCTTTGCAAAGTTTTAGTGTTTTTTATTCGATTCAATTCGAATTTATAGGAATTTGTTGTTCTTCAATTTTCGAAATGGTTTCCAATTAGAGTCCGTCTATTTTCCAGACATTTTTTCCAAAAATTTTCATTCAAATTTTTGGCGAATTCTAGTTCGAAGTTCAAGAAAAACATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTYGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>501 422 61 10 6</canonical_bands>
                <polymorphic_bands>511 422 61 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATAGGTAAGAAGCCTGAAACAA</pcr_primer_p1>
		<pcr_primer_p2>TCGGTTAAAAACTGTAATTATTTG</pcr_primer_p2>
		<pcr_amplicon_size>184</pcr_amplicon_size>
		<canonical_amplicon>TATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGA</canonical_amplicon>
		<polymorphic_amplicon>TATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTYGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19357</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>356995</contig_pos>
        <strand></strand>
        <context>AATTAGGTCA[G/T]ATTCTGAWAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCA</left_flank>
        <right_flank>ATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTTGCACTTTTTTCTGGAGAAATTTTGGAGATATGTATCCCAGTTCAGCTTTGCAAAGTTTTAGTGTTTTTTATTCGATTCAATTCGAATTTATAGGAATTTGTTGTTCTTCAATTTTCGAAATGGTTTCCAATTAGAGTCCGTCTATTTTCCAGACATTTTTTCCAAAAATTTTCATTCAAATTTTTGGCGAATTCTAGTTCGAAGTTCAAGAAAAACATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTA</canonical>
            <polymorphic>GTTTTTGCACTTTTTTCTGGAGAAATTTTGGAGATATGTATCCCAGTTCAGCTTTGCAAAGTTTTAGTGTTTTTTATTCGATTCAATTCGAATTTATAGGAATTTGTTGTTCTTCAATTTTCGAAATGGTTTCCAATTAGAGTCCGTCTATTTTCCAGACATTTTTTCCAAAAATTTTCATTCAAATTTTTGGCGAATTCTAGTTCGAAGTTCAAGAAAAACATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAKATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAGNNNCTG</site>
                <isoschizomers>
                    <enzyme>AlwNI</enzyme>
                    <enzyme>CaiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>219 189 134 119 104 80 67 60 28</canonical_bands>
                <polymorphic_bands>219 201 189 119 104 80 60 28</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>495 428 61 10 6</canonical_bands>
                <polymorphic_bands>495 428 67 10</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>353 249 147 104 80 67</canonical_bands>
                <polymorphic_bands>420 249 147 104 80</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGAACTTTATCTATCTTGGTC</pcr_primer_p1>
		<pcr_primer_p2>GAAAAGTAGGGAATTGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>355</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAKATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19358</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>357003</contig_pos>
        <strand></strand>
        <context>CAKATTCTGA[T/A]AATTCTTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGA</left_flank>
        <right_flank>AATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTTTTCTGGAGAAATTTTGGAGATATGTATCCCAGTTCAGCTTTGCAAAGTTTTAGTGTTTTTTATTCGATTCAATTCGAATTTATAGGAATTTGTTGTTCTTCAATTTTCGAAATGGTTTCCAATTAGAGTCCGTCTATTTTCCAGACATTTTTTCCAAAAATTTTCATTCAAATTTTTGGCGAATTCTAGTTCGAAGTTCAAGAAAAACATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTATTTGATTG</canonical>
            <polymorphic>ACTTTTTTCTGGAGAAATTTTGGAGATATGTATCCCAGTTCAGCTTTGCAAAGTTTTAGTGTTTTTTATTCGATTCAATTCGAATTTATAGGAATTTGTTGTTCTTCAATTTTCGAAATGGTTTCCAATTAGAGTCCGTCTATTTTCCAGACATTTTTTCCAAAAATTTTCATTCAAATTTTTGGCGAATTCTAGTTCGAAGTTCAAGAAAAACATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGAWAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTATTTGATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTATCTATCTTGGTCCATCAC</pcr_primer_p1>
		<pcr_primer_p2>GAAAAGTAGGGAATTGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>CTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGAWAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19359</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>357807</contig_pos>
        <strand>+</strand>
        <context>AACTSATAAT[A/G]GAACATAATG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGTCTTCCCGAACTTTTCTGAATCATTATGAGCAGTAGAAACTCATAAT</left_flank>
        <right_flank>GAACATAATGATAGCAAGTATCTCGTCCTGGATTAGTTGTTGTGTCACCC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGACATAGTTCGTGGCAAGTGACCATCGATCAGAAATCTGATGAGAGATAAGGAAAATGAGAAAATGGATGGAGAGGGGAATTGATTGACGAGCTCAGAGTGATTTTTGGATCAAAATGGATCTTTTTCTGGAATTTCGGAACATATAGAAGCTTCAGAATGTCTTTAAAGGGGTCTTCCCGAACTTTTCTGAATCATTATGAGCAGTAGAAACTCATAATGGAACATAATGATAGCAAGTATCTCGTCCTGGATTAGTTGTTGTGTCACCCAGATTCTCCTCTTTCTCCTCCGAAGAAAAAGAAGACAACTGACACTTTCATGACAGAGGTGAATTCAGACTCTATCTCAAAATCCTCCAGTGTCTCTCTATTTCATCCGGAGTCTTTTGGTAGCAAATTCTTTTTCGATAACCCTCCCTCAATCACCCCACAATCGAGTCAATTTTTGTCTTTTTCTTATACACCTTTTTAAAGATTTTTGGGCTTGGTTGAAAATATGGTCCCTTCTTCAGTTTCCCAAGCTTCCCAACATCTCTTCTGGGAAGCCATTTTTGCTCTTCAGCGCCAATTACCGTAATTCCTGCTAATTCCTTTTTCCTTCTTCTCCTGAATTCTACTTCTGACGATTGTGGCAGGCCTCCAAATTCAGAAGGCCAGCCACAGAAAATAGAAAAAAAAGCAAAAGCCAATAAATCAGTGCAAATGGCTTTGAGCTAAAAG</canonical>
            <polymorphic>CTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGACATAGTTCGTGGCAAGTGACCATCGATCAGAAATCTGATGAGAGATAAGGAAAATGAGAAAATGGATGGAGAGGGGAATTGATTGACGAGCTCAGAGTGATTTTTGGATCAAAATGGATCTTTTTCTGGAATTTCGGAACATATAGAAGCTTCAGAATGTCTTTAAAGGGGTCTTCCCGAACTTTTCTGAATCATTATGAGCAGTAGAAACTCATAATRGAACATAATGATAGCAAGTATCTCGTCCTGGATTAGTTGTTGTGTCACCCAGATTCTCCTCTTTCTCCTCCGAAGAAAAAGAAGACAACTGACACTTTCATGACAGAGGTGAATTCAGACTCTATCTCAAAATCCTCCAGTGTCTCTCTATTTCATCCGGAGTCTTTTGGTAGCAAATTCTTTTTCGATAACCCTCCCTCAATCACCCCACAATCGAGTCAATTTTTGTCTTTTTCTTATACACCTTTTTAAAGATTTTTGGGCTTGGTTGAAAATATGGTCCCTTCTTCAGTTTCCCAAGCTTCCCAACATCTCTTCTGGGAAGCCATTTTTGCTCTTCAGCGCCAATTACCGTAATTCCTGCTAATTCCTTTTTCCTTCTTCTCCTGAATTCTACTTCTGACGATTGTGGCAGGCCTCCAAATTCAGAAGGCCAGCCACAGAAAATAGAAAAAAAAGCAAAAGCCAATAAATCAGTGCAAATGGCTTTGAGCTAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGGAATTTCGGAACATATAG</pcr_primer_p1>
		<pcr_primer_p2>GAAATAGAGAGACACTGGAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTGGAATTTCGGAACATATAGAAGCTTCAGAATGTCTTTAAAGGGGTCTTCCCGAACTTTTCTGAATCATTATGAGCAGTAGAAACTCATAATGGAACATAATGATAGCAAGTATCTCGTCCTGGATTAGTTGTTGTGTCACCCAGATTCTCCTCTTTCTCCTCCGAAGAAAAAGAAGACAACTGACACTTTCATGACAGAGGTGAATTCAGACTCTATCTCAAAATCCTCCAGTGTCTCTCTATTTC</canonical_amplicon>
		<polymorphic_amplicon>TCTGGAATTTCGGAACATATAGAAGCTTCAGAATGTCTTTAAAGGGGTCTTCCCGAACTTTTCTGAATCATTATGAGCAGTAGAAACTCATAATRGAACATAATGATAGCAAGTATCTCGTCCTGGATTAGTTGTTGTGTCACCCAGATTCTCCTCTTTCTCCTCCGAAGAAAAAGAAGACAACTGACACTTTCATGACAGAGGTGAATTCAGACTCTATCTCAAAATCCTCCAGTGTCTCTCTATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19360</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>357801</contig_pos>
        <strand>+</strand>
        <context>AGTAGAAACT[C/G]ATAATRGAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTAAAGGGGTCTTCCCGAACTTTTCTGAATCATTATGAGCAGTAGAAACT</left_flank>
        <right_flank>ATAATGGAACATAATGATAGCAAGTATCTCGTCCTGGATTAGTTGTTGTG</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGACATAGTTCGTGGCAAGTGACCATCGATCAGAAATCTGATGAGAGATAAGGAAAATGAGAAAATGGATGGAGAGGGGAATTGATTGACGAGCTCAGAGTGATTTTTGGATCAAAATGGATCTTTTTCTGGAATTTCGGAACATATAGAAGCTTCAGAATGTCTTTAAAGGGGTCTTCCCGAACTTTTCTGAATCATTATGAGCAGTAGAAACTCATAATGGAACATAATGATAGCAAGTATCTCGTCCTGGATTAGTTGTTGTGTCACCCAGATTCTCCTCTTTCTCCTCCGAAGAAAAAGAAGACAACTGACACTTTCATGACAGAGGTGAATTCAGACTCTATCTCAAAATCCTCCAGTGTCTCTCTATTTCATCCGGAGTCTTTTGGTAGCAAATTCTTTTTCGATAACCCTCCCTCAATCACCCCACAATCGAGTCAATTTTTGTCTTTTTCTTATACACCTTTTTAAAGATTTTTGGGCTTGGTTGAAAATATGGTCCCTTCTTCAGTTTCCCAAGCTTCCCAACATCTCTTCTGGGAAGCCATTTTTGCTCTTCAGCGCCAATTACCGTAATTCCTGCTAATTCCTTTTTCCTTCTTCTCCTGAATTCTACTTCTGACGATTGTGGCAGGCCTCCAAATTCAGAAGGCCAGCCACAGAAAATAGAAAAAAAAGCAAAAGCCAATAAATCAGTGCAAATGGCTTTGAGC</canonical>
            <polymorphic>GTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGACATAGTTCGTGGCAAGTGACCATCGATCAGAAATCTGATGAGAGATAAGGAAAATGAGAAAATGGATGGAGAGGGGAATTGATTGACGAGCTCAGAGTGATTTTTGGATCAAAATGGATCTTTTTCTGGAATTTCGGAACATATAGAAGCTTCAGAATGTCTTTAAAGGGGTCTTCCCGAACTTTTCTGAATCATTATGAGCAGTAGAAACTSATAATGGAACATAATGATAGCAAGTATCTCGTCCTGGATTAGTTGTTGTGTCACCCAGATTCTCCTCTTTCTCCTCCGAAGAAAAAGAAGACAACTGACACTTTCATGACAGAGGTGAATTCAGACTCTATCTCAAAATCCTCCAGTGTCTCTCTATTTCATCCGGAGTCTTTTGGTAGCAAATTCTTTTTCGATAACCCTCCCTCAATCACCCCACAATCGAGTCAATTTTTGTCTTTTTCTTATACACCTTTTTAAAGATTTTTGGGCTTGGTTGAAAATATGGTCCCTTCTTCAGTTTCCCAAGCTTCCCAACATCTCTTCTGGGAAGCCATTTTTGCTCTTCAGCGCCAATTACCGTAATTCCTGCTAATTCCTTTTTCCTTCTTCTCCTGAATTCTACTTCTGACGATTGTGGCAGGCCTCCAAATTCAGAAGGCCAGCCACAGAAAATAGAAAAAAAAGCAAAAGCCAATAAATCAGTGCAAATGGCTTTGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGGAATTTCGGAACATATAG</pcr_primer_p1>
		<pcr_primer_p2>GAAATAGAGAGACACTGGAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTGGAATTTCGGAACATATAGAAGCTTCAGAATGTCTTTAAAGGGGTCTTCCCGAACTTTTCTGAATCATTATGAGCAGTAGAAACTCATAATGGAACATAATGATAGCAAGTATCTCGTCCTGGATTAGTTGTTGTGTCACCCAGATTCTCCTCTTTCTCCTCCGAAGAAAAAGAAGACAACTGACACTTTCATGACAGAGGTGAATTCAGACTCTATCTCAAAATCCTCCAGTGTCTCTCTATTTC</canonical_amplicon>
		<polymorphic_amplicon>TCTGGAATTTCGGAACATATAGAAGCTTCAGAATGTCTTTAAAGGGGTCTTCCCGAACTTTTCTGAATCATTATGAGCAGTAGAAACTSATAATGGAACATAATGATAGCAAGTATCTCGTCCTGGATTAGTTGTTGTGTCACCCAGATTCTCCTCTTTCTCCTCCGAAGAAAAAGAAGACAACTGACACTTTCATGACAGAGGTGAATTCAGACTCTATCTCAAAATCCTCCAGTGTCTCTCTATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19361</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>357740</contig_pos>
        <strand>+</strand>
        <context>TATAGAAGCT[C/T]CAGAATGTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGGATCAAAATGGATCTTTTTCTGGAATTTCGGAACATATAGAAGCT</left_flank>
        <right_flank>CAGAATGTCTTTAAAGGGGTCTTCCCGAACTTTTCTGAATCATTATGAGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGACATAGTTCGTGGCAAGTGACCATCGATCAGAAATCTGATGAGAGATAAGGAAAATGAGAAAATGGATGGAGAGGGGAATTGATTGACGAGCTCAGAGTGATTTTTGGATCAAAATGGATCTTTTTCTGGAATTTCGGAACATATAGAAGCTTCAGAATGTCTTTAAAGGGGTCTTCCCGAACTTTTCTGAATCATTATGAGCAGTAGAAACTCATAATGGAACATAATGATAGCAAGTATCTCGTCCTGGATTAGTTGTTGTGTCACCCAGATTCTCCTCTTTCTCCTCCGAAGAAAAAGAAGACAACTGACACTTTCATGACAGAGGTGAATTCAGACTCTATCTCAAAATCCTCCAGTGTCTCTCTATTTCATCCGGAGTCTTTTGGTAGCAAATTCTTTTTCGATAACCCTCCCTCAATCACCCCACAATCGAGTCAATTTTTGTCTTTTTCTTATACACCTTTTTAAAGATTTTTGGGCTTGGTTGAAAATATGGTCCCTTCTTCAGTTTCCCAAGCTTCCCAACATCTCTTCTGGGAAGCCATTTTTGCTCTTCAGCGCCAATTACCGTAATTCCTGCTAATTCCTTTTTCCTTCTTCTCCTGAATTCTACTTCTGACGATTGTGGCAGGCCTCCAAATTCAGAAGG</canonical>
            <polymorphic>CAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGACATAGTTCGTGGCAAGTGACCATCGATCAGAAATCTGATGAGAGATAAGGAAAATGAGAAAATGGATGGAGAGGGGAATTGATTGACGAGCTCAGAGTGATTTTTGGATCAAAATGGATCTTTTTCTGGAATTTCGGAACATATAGAAGCTYCAGAATGTCTTTAAAGGGGTCTTCCCGAACTTTTCTGAATCATTATGAGCAGTAGAAACTCATAATGGAACATAATGATAGCAAGTATCTCGTCCTGGATTAGTTGTTGTGTCACCCAGATTCTCCTCTTTCTCCTCCGAAGAAAAAGAAGACAACTGACACTTTCATGACAGAGGTGAATTCAGACTCTATCTCAAAATCCTCCAGTGTCTCTCTATTTCATCCGGAGTCTTTTGGTAGCAAATTCTTTTTCGATAACCCTCCCTCAATCACCCCACAATCGAGTCAATTTTTGTCTTTTTCTTATACACCTTTTTAAAGATTTTTGGGCTTGGTTGAAAATATGGTCCCTTCTTCAGTTTCCCAAGCTTCCCAACATCTCTTCTGGGAAGCCATTTTTGCTCTTCAGCGCCAATTACCGTAATTCCTGCTAATTCCTTTTTCCTTCTTCTCCTGAATTCTACTTCTGACGATTGTGGCAGGCCTCCAAATTCAGAAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>495 371 134</canonical_bands>
                <polymorphic_bands>866 134</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>284 282 102 95 58 46 42 34 27 18 7 5</canonical_bands>
                <polymorphic_bands>284 282 102 95 58 52 46 42 27 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAGAGTGATTTTTGGATCA</pcr_primer_p1>
		<pcr_primer_p2>AGTCTGAATTCACCTCTGTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCAGAGTGATTTTTGGATCAAAATGGATCTTTTTCTGGAATTTCGGAACATATAGAAGCTTCAGAATGTCTTTAAAGGGGTCTTCCCGAACTTTTCTGAATCATTATGAGCAGTAGAAACTCATAATGGAACATAATGATAGCAAGTATCTCGTCCTGGATTAGTTGTTGTGTCACCCAGATTCTCCTCTTTCTCCTCCGAAGAAAAAGAAGACAACTGACACTTTCATGACAGAGGTGAATTCAGACT</canonical_amplicon>
		<polymorphic_amplicon>CTCAGAGTGATTTTTGGATCAAAATGGATCTTTTTCTGGAATTTCGGAACATATAGAAGCTYCAGAATGTCTTTAAAGGGGTCTTCCCGAACTTTTCTGAATCATTATGAGCAGTAGAAACTCATAATGGAACATAATGATAGCAAGTATCTCGTCCTGGATTAGTTGTTGTGTCACCCAGATTCTCCTCTTTCTCCTCCGAAGAAAAAGAAGACAACTGACACTTTCATGACAGAGGTGAATTCAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19362</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>357707</contig_pos>
        <strand>+</strand>
        <context>TCAAAATGGA[A/T]CTTTTTCTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGAGGGGAATTGATTGACGAGCTCAGAGTGATTTTTGGATCAAAATGGA</left_flank>
        <right_flank>CTTTTTCTGGAATTTCGGAACATATAGAAGCTTCAGAATGTCTTTAAAGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGACATAGTTCGTGGCAAGTGACCATCGATCAGAAATCTGATGAGAGATAAGGAAAATGAGAAAATGGATGGAGAGGGGAATTGATTGACGAGCTCAGAGTGATTTTTGGATCAAAATGGATCTTTTTCTGGAATTTCGGAACATATAGAAGCTTCAGAATGTCTTTAAAGGGGTCTTCCCGAACTTTTCTGAATCATTATGAGCAGTAGAAACTCATAATGGAACATAATGATAGCAAGTATCTCGTCCTGGATTAGTTGTTGTGTCACCCAGATTCTCCTCTTTCTCCTCCGAAGAAAAAGAAGACAACTGACACTTTCATGACAGAGGTGAATTCAGACTCTATCTCAAAATCCTCCAGTGTCTCTCTATTTCATCCGGAGTCTTTTGGTAGCAAATTCTTTTTCGATAACCCTCCCTCAATCACCCCACAATCGAGTCAATTTTTGTCTTTTTCTTATACACCTTTTTAAAGATTTTTGGGCTTGGTTGAAAATATGGTCCCTTCTTCAGTTTCCCAAGCTTCCCAACATCTCTTCTGGGAAGCCATTTTTGCTCTTCAGCGCCAATTACCGTAATTCCTGCTAATTCCTTTTTCCTTCTTCTCCTGAATTCTACTTC</canonical>
            <polymorphic>CGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGACATAGTTCGTGGCAAGTGACCATCGATCAGAAATCTGATGAGAGATAAGGAAAATGAGAAAATGGATGGAGAGGGGAATTGATTGACGAGCTCAGAGTGATTTTTGGATCAAAATGGAWCTTTTTCTGGAATTTCGGAACATATAGAAGCTTCAGAATGTCTTTAAAGGGGTCTTCCCGAACTTTTCTGAATCATTATGAGCAGTAGAAACTCATAATGGAACATAATGATAGCAAGTATCTCGTCCTGGATTAGTTGTTGTGTCACCCAGATTCTCCTCTTTCTCCTCCGAAGAAAAAGAAGACAACTGACACTTTCATGACAGAGGTGAATTCAGACTCTATCTCAAAATCCTCCAGTGTCTCTCTATTTCATCCGGAGTCTTTTGGTAGCAAATTCTTTTTCGATAACCCTCCCTCAATCACCCCACAATCGAGTCAATTTTTGTCTTTTTCTTATACACCTTTTTAAAGATTTTTGGGCTTGGTTGAAAATATGGTCCCTTCTTCAGTTTCCCAAGCTTCCCAACATCTCTTCTGGGAAGCCATTTTTGCTCTTCAGCGCCAATTACCGTAATTCCTGCTAATTCCTTTTTCCTTCTTCTCCTGAATTCTACTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>503 405 82 10</canonical_bands>
                <polymorphic_bands>513 405 82</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGAGATAAGGAAAATGAGAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGGAGAAAGAGGAGAATCTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGAGAGATAAGGAAAATGAGAAAATGGATGGAGAGGGGAATTGATTGACGAGCTCAGAGTGATTTTTGGATCAAAATGGATCTTTTTCTGGAATTTCGGAACATATAGAAGCTTCAGAATGTCTTTAAAGGGGTCTTCCCGAACTTTTCTGAATCATTATGAGCAGTAGAAACTCATAATGGAACATAATGATAGCAAGTATCTCGTCCTGGATTAGTTGTTGTGTCACCCAGATTCTCCTCTTTCTCCTC</canonical_amplicon>
		<polymorphic_amplicon>TGAGAGATAAGGAAAATGAGAAAATGGATGGAGAGGGGAATTGATTGACGAGCTCAGAGTGATTTTTGGATCAAAATGGAWCTTTTTCTGGAATTTCGGAACATATAGAAGCTTCAGAATGTCTTTAAAGGGGTCTTCCCGAACTTTTCTGAATCATTATGAGCAGTAGAAACTCATAATGGAACATAATGATAGCAAGTATCTCGTCCTGGATTAGTTGTTGTGTCACCCAGATTCTCCTCTTTCTCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19363</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>357600</contig_pos>
        <strand>+</strand>
        <context>ATAGTTCGTG[G/T]CAAGTGACCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGACATAGTTCGTG</left_flank>
        <right_flank>CAAGTGACCATCGATCAGAAATCTGATGAGAGATAAGGAAAATGAGAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGACATAGTTCGTGGCAAGTGACCATCGATCAGAAATCTGATGAGAGATAAGGAAAATGAGAAAATGGATGGAGAGGGGAATTGATTGACGAGCTCAGAGTGATTTTTGGATCAAAATGGATCTTTTTCTGGAATTTCGGAACATATAGAAGCTTCAGAATGTCTTTAAAGGGGTCTTCCCGAACTTTTCTGAATCATTATGAGCAGTAGAAACTCATAATGGAACATAATGATAGCAAGTATCTCGTCCTGGATTAGTTGTTGTGTCACCCAGATTCTCCTCTTTCTCCTCCGAAGAAAAAGAAGACAACTGACACTTTCATGACAGAGGTGAATTCAGACTCTATCTCAAAATCCTCCAGTGTCTCTCTATTTCATCCGGAGTCTTTTGGTAGCAAATTCTTTTTCGATAACCCTCCCTCAATCACCCCACAATCGAGTCAATTTTTGTCTTTTTCTTATACACCTTTTTAAAGATTTTTGGGCTTGGTTGAAAATATGGTCCCTTCTTCAGT</canonical>
            <polymorphic>CTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGACATAGTTCGTGKCAAGTGACCATCGATCAGAAATCTGATGAGAGATAAGGAAAATGAGAAAATGGATGGAGAGGGGAATTGATTGACGAGCTCAGAGTGATTTTTGGATCAAAATGGATCTTTTTCTGGAATTTCGGAACATATAGAAGCTTCAGAATGTCTTTAAAGGGGTCTTCCCGAACTTTTCTGAATCATTATGAGCAGTAGAAACTCATAATGGAACATAATGATAGCAAGTATCTCGTCCTGGATTAGTTGTTGTGTCACCCAGATTCTCCTCTTTCTCCTCCGAAGAAAAAGAAGACAACTGACACTTTCATGACAGAGGTGAATTCAGACTCTATCTCAAAATCCTCCAGTGTCTCTCTATTTCATCCGGAGTCTTTTGGTAGCAAATTCTTTTTCGATAACCCTCCCTCAATCACCCCACAATCGAGTCAATTTTTGTCTTTTTCTTATACACCTTTTTAAAGATTTTTGGGCTTGGTTGAAAATATGGTCCCTTCTTCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGTGTTAGTGTTGGTTTTG</pcr_primer_p1>
		<pcr_primer_p2>ATCCATTTTCTCATTTTCCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGACATAGTTCGTGGCAAGTGACCATCGATCAGAAATCTGATGAGAGATAAGGAAAATGAGAAAATGGAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGACATAGTTCGTGKCAAGTGACCATCGATCAGAAATCTGATGAGAGATAAGGAAAATGAGAAAATGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19364</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>357488</contig_pos>
        <strand>+</strand>
        <context>CATCTACTCT[C/T]CCCACTATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCT</left_flank>
        <right_flank>CCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGACATAGTTCGTGGCAAGTGACCATCGATCAGAAATCTGATGAGAGATAAGGAAAATGAGAAAATGGATGGAGAGGGGAATTGATTGACGAGCTCAGAGTGATTTTTGGATCAAAATGGATCTTTTTCTGGAATTTCGGAACATATAGAAGCTTCAGAATGTCTTTAAAGGGGTCTTCCCGAACTTTTCTGAATCATTATGAGCAGTAGAAACTCATAATGGAACATAATGATAGCAAGTATCTCGTCCTGGATTAGTTGTTGTGTCACCCAGATTCTCCTCTTTCTCCTCCGAAGAAAAAGAAGACAACTGACACTTTCATGACAGAGGTGAATTCAGACTCTATCTCAAAATCCTCCAGTGTCTCTCTATTTCATCCGGAGTCTTTTGGTAGCAAATTCT</canonical>
            <polymorphic>AGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTYCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGACATAGTTCGTGGCAAGTGACCATCGATCAGAAATCTGATGAGAGATAAGGAAAATGAGAAAATGGATGGAGAGGGGAATTGATTGACGAGCTCAGAGTGATTTTTGGATCAAAATGGATCTTTTTCTGGAATTTCGGAACATATAGAAGCTTCAGAATGTCTTTAAAGGGGTCTTCCCGAACTTTTCTGAATCATTATGAGCAGTAGAAACTCATAATGGAACATAATGATAGCAAGTATCTCGTCCTGGATTAGTTGTTGTGTCACCCAGATTCTCCTCTTTCTCCTCCGAAGAAAAAGAAGACAACTGACACTTTCATGACAGAGGTGAATTCAGACTCTATCTCAAAATCCTCCAGTGTCTCTCTATTTCATCCGGAGTCTTTTGGTAGCAAATTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAATAGAGGAATCCACAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCCTATGAGAAGAATCAATGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGA</canonical_amplicon>
		<polymorphic_amplicon>AGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTYCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19365</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>357476</contig_pos>
        <strand>+</strand>
        <context>TGACTCATTT[A/T]CCATCTACTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTT</left_flank>
        <right_flank>CCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGACATAGTTCGTGGCAAGTGACCATCGATCAGAAATCTGATGAGAGATAAGGAAAATGAGAAAATGGATGGAGAGGGGAATTGATTGACGAGCTCAGAGTGATTTTTGGATCAAAATGGATCTTTTTCTGGAATTTCGGAACATATAGAAGCTTCAGAATGTCTTTAAAGGGGTCTTCCCGAACTTTTCTGAATCATTATGAGCAGTAGAAACTCATAATGGAACATAATGATAGCAAGTATCTCGTCCTGGATTAGTTGTTGTGTCACCCAGATTCTCCTCTTTCTCCTCCGAAGAAAAAGAAGACAACTGACACTTTCATGACAGAGGTGAATTCAGACTCTATCTCAAAATCCTCCAGTGTCTCTCTATTTCATCCGGAGTCTTTTG</canonical>
            <polymorphic>AAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTWCCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGACATAGTTCGTGGCAAGTGACCATCGATCAGAAATCTGATGAGAGATAAGGAAAATGAGAAAATGGATGGAGAGGGGAATTGATTGACGAGCTCAGAGTGATTTTTGGATCAAAATGGATCTTTTTCTGGAATTTCGGAACATATAGAAGCTTCAGAATGTCTTTAAAGGGGTCTTCCCGAACTTTTCTGAATCATTATGAGCAGTAGAAACTCATAATGGAACATAATGATAGCAAGTATCTCGTCCTGGATTAGTTGTTGTGTCACCCAGATTCTCCTCTTTCTCCTCCGAAGAAAAAGAAGACAACTGACACTTTCATGACAGAGGTGAATTCAGACTCTATCTCAAAATCCTCCAGTGTCTCTCTATTTCATCCGGAGTCTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAATAGAGGAATCCACAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCCTATGAGAAGAATCAATGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGA</canonical_amplicon>
		<polymorphic_amplicon>AGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTWCCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19366</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>357266</contig_pos>
        <strand></strand>
        <context>CCTAAATTCT[A/G]AAAAAAAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCT</left_flank>
        <right_flank>AAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCT</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGACATAGTTCGTGGCAAGTGACCATCGATCAGAAATCTGATGAGAGATAAGGAAAATGAGAAAATGGATGGAGAGGGGAATTGATTGACGAGCTCAGAGTGATTTTTGGATCAAAATGGATCTTTTTCTGGAATTTCGGAACATATAGAAGCTTCAGAATGTCTTTAAAGGGGTCTTCCC</canonical>
            <polymorphic>ATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTRAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGACATAGTTCGTGGCAAGTGACCATCGATCAGAAATCTGATGAGAGATAAGGAAAATGAGAAAATGGATGGAGAGGGGAATTGATTGACGAGCTCAGAGTGATTTTTGGATCAAAATGGATCTTTTTCTGGAATTTCGGAACATATAGAAGCTTCAGAATGTCTTTAAAGGGGTCTTCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTATCTATCTTGGTCCATCAC</pcr_primer_p1>
		<pcr_primer_p2>GGTATTAGAGTTAGAGCTCAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>383</pcr_amplicon_size>
		<canonical_amplicon>CTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACC</canonical_amplicon>
		<polymorphic_amplicon>CTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTRAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19367</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>481041</contig_pos>
        <strand>+</strand>
        <context>TCTTTTCGAA[A/T]ATCCATGCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATCAACGTCCTCTGGCATCAGGAACATCTTCGAGAAGCATCTTTTCGAA</left_flank>
        <right_flank>ATCCATGCTCAGATTTCATCTCTTGACATCCTTCGATTTTAAGCTCTCTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACAATATCCCATTTGATGTAAACTTTGAGCACTTTTTTTTTCAACTTTTCAGTTTTCTTCGGGATTTTTGAATACATTTCACACCCTTTGGAAAAAATATCACTTTGAACCATAATGATAGTTTTCAGAATTGGTAAACATCTTCAAGGTTCAAAGCAGTTTTCATTGTAGAGAATAAATTTTTGATGCCACACCAACTGCAGTCGCTGCTTGCTCATCCGAAAAACTTCATTTGATTTTTATGTCGCAAACATATTACATTGTACACAGAGATCTGGTTAAATTTAATATATATTGAGTATCAAAATCAAAGTAAACAGGTCAGGTTTACAAGTCAATGTTTTTCAACGAAGCTAATTGGAATAGCACGAGAACTGTTGGCAGAGCCTTTTGGGGCTTCGATTTGAAGCTTTCCGTCGTTGGAAATCGCAGATCTGAGAGCAGTCAAATCAACGTCCTCTGGCATCAGGAACATCTTCGAGAAGCATCTTTTCGAATATCCATGCTCAGATTTCATCTCTTGACATCCTTCGATTTTAAGCTCTCTTCCATCCAATTGAATCTTCATATCTTCTGGTCTGAAATGAGATACATCCAATTGGACAGCATATTTTGAGTCGTCGTTGATGACCTGAAATGAGGAACTTGAATGAAACTTACTATTAGTAATAGTCTTCCACTCACCTCTCCAACAGTATCAGAAAAATTGAAAGAGCTGTGATCTGCATCTCTCCAATAAGGGAGAACAGATCTTCGGGAAAAATCATCAAAAAAGTGATCAGAAGAGCGAGATCTTCCGTAAGGGGTACGATAAACCATCATTGTCGTGAAAGTTTCAGAAAGTTTTTGGCTTCATCGGAATCTCCGAATCCTTTTATACTATTGCTCAGAAAAACATGAAAACAACATCAACATCTGTCTTCAGACGATTCCAGAAGACATCACGGTGGCCATGGTGTTTTCAAAGCAGAGAAAAATGCATAAAAATAGAGCATTGT</canonical>
            <polymorphic>CGACAATATCCCATTTGATGTAAACTTTGAGCACTTTTTTTTTCAACTTTTCAGTTTTCTTCGGGATTTTTGAATACATTTCACACCCTTTGGAAAAAATATCACTTTGAACCATAATGATAGTTTTCAGAATTGGTAAACATCTTCAAGGTTCAAAGCAGTTTTCATTGTAGAGAATAAATTTTTGATGCCACACCAACTGCAGTCGCTGCTTGCTCATCCGAAAAACTTCATTTGATTTTTATGTCGCAAACATATTACATTGTACACAGAGATCTGGTTAAATTTAATATATATTGAGTATCAAAATCAAAGTAAACAGGTCAGGTTTACAAGTCAATGTTTTTCAACGAAGCTAATTGGAATAGCACGAGAACTGTTGGCAGAGCCTTTTGGGGCTTCGATTTGAAGCTTTCCGTCGTTGGAAATCGCAGATCTGAGAGCAGTCAAATCAACGTCCTCTGGCATCAGGAACATCTTCGAGAAGCATCTTTTCGAAWATCCATGCTCAGATTTCATCTCTTGACATCCTTCGATTTTAAGCTCTCTTCCATCCAATTGAATCTTCATATCTTCTGGTCTGAAATGAGATACATCCAATTGGACAGCATATTTTGAGTCGTCGTTGATGACCTGAAATGAGGAACTTGAATGAAACTTACTATTAGTAATAGTCTTCCACTCACCTCTCCAACAGTATCAGAAAAATTGAAAGAGCTGTGATCTGCATCTCTCCAATAAGGGAGAACAGATCTTCGGGAAAAATCATCAAAAAAGTGATCAGAAGAGCGAGATCTTCCGTAAGGGGTACGATAAACCATCATTGTCGTGAAAGTTTCAGAAAGTTTTTGGCTTCATCGGAATCTCCGAATCCTTTTATACTATTGCTCAGAAAAACATGAAAACAACATCAACATCTGTCTTCAGACGATTCCAGAAGACATCACGGTGGCCATGGTGTTTTCAAAGCAGAGAAAAATGCATAAAAATAGAGCATTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAACGAAGCTAATTGGAATA</pcr_primer_p1>
		<pcr_primer_p2>GTATCTCATTTCAGACCAGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCAACGAAGCTAATTGGAATAGCACGAGAACTGTTGGCAGAGCCTTTTGGGGCTTCGATTTGAAGCTTTCCGTCGTTGGAAATCGCAGATCTGAGAGCAGTCAAATCAACGTCCTCTGGCATCAGGAACATCTTCGAGAAGCATCTTTTCGAATATCCATGCTCAGATTTCATCTCTTGACATCCTTCGATTTTAAGCTCTCTTCCATCCAATTGAATCTTCATATCTTCTGGTCTGAAATGAGATAC</canonical_amplicon>
		<polymorphic_amplicon>TCAACGAAGCTAATTGGAATAGCACGAGAACTGTTGGCAGAGCCTTTTGGGGCTTCGATTTGAAGCTTTCCGTCGTTGGAAATCGCAGATCTGAGAGCAGTCAAATCAACGTCCTCTGGCATCAGGAACATCTTCGAGAAGCATCTTTTCGAAWATCCATGCTCAGATTTCATCTCTTGACATCCTTCGATTTTAAGCTCTCTTCCATCCAATTGAATCTTCATATCTTCTGGTCTGAAATGAGATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19368</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>480887</contig_pos>
        <strand>+</strand>
        <context>GTCAATGTTT[A/T]TCAACGAAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTGAGTATCAAAATCAAAGTAAACAGGTCAGGTTTACAAGTCAATGTTT</left_flank>
        <right_flank>TCAACGAAGCTAATTGGAATAGCACGAGAACTGTTGGCAGAGCCTTTTGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTCCCCACTTGGNNNNNNNNNNTAGATCATGATCTAGTTCAAACCCGCGTTCATTTTGAAATTATTAAATTTCTTCTGGCCTACAAGTTTGCTGGGGCGCTTTTTCTGACCCCCTAGCTTGAACCCAAGTGGGTCCCAGCTTTTTTTTAAATCGACAATATCCCATTTGATGTAAACTTTGAGCACTTTTTTTTTCAACTTTTCAGTTTTCTTCGGGATTTTTGAATACATTTCACACCCTTTGGAAAAAATATCACTTTGAACCATAATGATAGTTTTCAGAATTGGTAAACATCTTCAAGGTTCAAAGCAGTTTTCATTGTAGAGAATAAATTTTTGATGCCACACCAACTGCAGTCGCTGCTTGCTCATCCGAAAAACTTCATTTGATTTTTATGTCGCAAACATATTACATTGTACACAGAGATCTGGTTAAATTTAATATATATTGAGTATCAAAATCAAAGTAAACAGGTCAGGTTTACAAGTCAATGTTTTTCAACGAAGCTAATTGGAATAGCACGAGAACTGTTGGCAGAGCCTTTTGGGGCTTCGATTTGAAGCTTTCCGTCGTTGGAAATCGCAGATCTGAGAGCAGTCAAATCAACGTCCTCTGGCATCAGGAACATCTTCGAGAAGCATCTTTTCGAATATCCATGCTCAGATTTCATCTCTTGACATCCTTCGATTTTAAGCTCTCTTCCATCCAATTGAATCTTCATATCTTCTGGTCTGAAATGAGATACATCCAATTGGACAGCATATTTTGAGTCGTCGTTGATGACCTGAAATGAGGAACTTGAATGAAACTTACTATTAGTAATAGTCTTCCACTCACCTCTCCAACAGTATCAGAAAAATTGAAAGAGCTGTGATCTGCATCTCTCCAATAAGGGAGAACAGATCTTCGGGAAAAATCATCAAAAAAGTGATCAGAAGAGCGAGATCTTCCGTAAGGGGTACGATAAACCATCATTGTCGTGAAAGTTTCAGAAAGT</canonical>
            <polymorphic>AGGTCCCCACTTGGNNNNNNNNNNTAGATCATGATCTAGTTCAAACCCGCGTTCATTTTGAAATTATTAAATTTCTTCTGGCCTACAAGTTTGCTGGGGCGCTTTTTCTGACCCCCTAGCTTGAACCCAAGTGGGTCCCAGCTTTTTTTTAAATCGACAATATCCCATTTGATGTAAACTTTGAGCACTTTTTTTTTCAACTTTTCAGTTTTCTTCGGGATTTTTGAATACATTTCACACCCTTTGGAAAAAATATCACTTTGAACCATAATGATAGTTTTCAGAATTGGTAAACATCTTCAAGGTTCAAAGCAGTTTTCATTGTAGAGAATAAATTTTTGATGCCACACCAACTGCAGTCGCTGCTTGCTCATCCGAAAAACTTCATTTGATTTTTATGTCGCAAACATATTACATTGTACACAGAGATCTGGTTAAATTTAATATATATTGAGTATCAAAATCAAAGTAAACAGGTCAGGTTTACAAGTCAATGTTTWTCAACGAAGCTAATTGGAATAGCACGAGAACTGTTGGCAGAGCCTTTTGGGGCTTCGATTTGAAGCTTTCCGTCGTTGGAAATCGCAGATCTGAGAGCAGTCAAATCAACGTCCTCTGGCATCAGGAACATCTTCGAGAAGCATCTTTTCGAATATCCATGCTCAGATTTCATCTCTTGACATCCTTCGATTTTAAGCTCTCTTCCATCCAATTGAATCTTCATATCTTCTGGTCTGAAATGAGATACATCCAATTGGACAGCATATTTTGAGTCGTCGTTGATGACCTGAAATGAGGAACTTGAATGAAACTTACTATTAGTAATAGTCTTCCACTCACCTCTCCAACAGTATCAGAAAAATTGAAAGAGCTGTGATCTGCATCTCTCCAATAAGGGAGAACAGATCTTCGGGAAAAATCATCAAAAAAGTGATCAGAAGAGCGAGATCTTCCGTAAGGGGTACGATAAACCATCATTGTCGTGAAAGTTTCAGAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTATGTCGCAAACATATTACA</pcr_primer_p1>
		<pcr_primer_p2>TCTCGAAGATGTTCCTGATG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTTATGTCGCAAACATATTACATTGTACACAGAGATCTGGTTAAATTTAATATATATTGAGTATCAAAATCAAAGTAAACAGGTCAGGTTTACAAGTCAATGTTTTTCAACGAAGCTAATTGGAATAGCACGAGAACTGTTGGCAGAGCCTTTTGGGGCTTCGATTTGAAGCTTTCCGTCGTTGGAAATCGCAGATCTGAGAGCAGTCAAATCAACGTCCTCTGGCATCAGGAACATCTTCGAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTATGTCGCAAACATATTACATTGTACACAGAGATCTGGTTAAATTTAATATATATTGAGTATCAAAATCAAAGTAAACAGGTCAGGTTTACAAGTCAATGTTTWTCAACGAAGCTAATTGGAATAGCACGAGAACTGTTGGCAGAGCCTTTTGGGGCTTCGATTTGAAGCTTTCCGTCGTTGGAAATCGCAGATCTGAGAGCAGTCAAATCAACGTCCTCTGGCATCAGGAACATCTTCGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19369</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>480869</contig_pos>
        <strand></strand>
        <context>AACAGGTCAG[G/A]TRTACAAGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGGTTAAATTTAATATATATTGAGTATCAAAATCAAAGTAAACAGGTCAG</left_flank>
        <right_flank>TTTACAAGTCAATGTTTTTCAACGAAGCTAATTGGAATAGCACGAGAACT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGGTTTTCAAACTCTCAGGTCCCCACTTGGNNNNNNNNNNTAGATCATGATCTAGTTCAAACCCGCGTTCATTTTGAAATTATTAAATTTCTTCTGGCCTACAAGTTTGCTGGGGCGCTTTTTCTGACCCCCTAGCTTGAACCCAAGTGGGTCCCAGCTTTTTTTTAAATCGACAATATCCCATTTGATGTAAACTTTGAGCACTTTTTTTTTCAACTTTTCAGTTTTCTTCGGGATTTTTGAATACATTTCACACCCTTTGGAAAAAATATCACTTTGAACCATAATGATAGTTTTCAGAATTGGTAAACATCTTCAAGGTTCAAAGCAGTTTTCATTGTAGAGAATAAATTTTTGATGCCACACCAACTGCAGTCGCTGCTTGCTCATCCGAAAAACTTCATTTGATTTTTATGTCGCAAACATATTACATTGTACACAGAGATCTGGTTAAATTTAATATATATTGAGTATCAAAATCAAAGTAAACAGGTCAGGTTTACAAGTCAATGTTTTTCAACGAAGCTAATTGGAATAGCACGAGAACTGTTGGCAGAGCCTTTTGGGGCTTCGATTTGAAGCTTTCCGTCGTTGGAAATCGCAGATCTGAGAGCAGTCAAATCAACGTCCTCTGGCATCAGGAACATCTTCGAGAAGCATCTTTTCGAATATCCATGCTCAGATTTCATCTCTTGACATCCTTCGATTTTAAGCTCTCTTCCATCCAATTGAATCTTCATATCTTCTGGTCTGAAATGAGATACATCCAATTGGACAGCATATTTTGAGTCGTCGTTGATGACCTGAAATGAGGAACTTGAATGAAACTTACTATTAGTAATAGTCTTCCACTCACCTCTCCAACAGTATCAGAAAAATTGAAAGAGCTGTGATCTGCATCTCTCCAATAAGGGAGAACAGATCTTCGGGAAAAATCATCAAAAAAGTGATCAGAAGAGCGAGATCTTCCGTAAGGGGTACGATAAACCATCATTGTC</canonical>
            <polymorphic>GATGGTTTTCAAACTCTCAGGTCCCCACTTGGNNNNNNNNNNTAGATCATGATCTAGTTCAAACCCGCGTTCATTTTGAAATTATTAAATTTCTTCTGGCCTACAAGTTTGCTGGGGCGCTTTTTCTGACCCCCTAGCTTGAACCCAAGTGGGTCCCAGCTTTTTTTTAAATCGACAATATCCCATTTGATGTAAACTTTGAGCACTTTTTTTTTCAACTTTTCAGTTTTCTTCGGGATTTTTGAATACATTTCACACCCTTTGGAAAAAATATCACTTTGAACCATAATGATAGTTTTCAGAATTGGTAAACATCTTCAAGGTTCAAAGCAGTTTTCATTGTAGAGAATAAATTTTTGATGCCACACCAACTGCAGTCGCTGCTTGCTCATCCGAAAAACTTCATTTGATTTTTATGTCGCAAACATATTACATTGTACACAGAGATCTGGTTAAATTTAATATATATTGAGTATCAAAATCAAAGTAAACAGGTCAGRTTTACAAGTCAATGTTTTTCAACGAAGCTAATTGGAATAGCACGAGAACTGTTGGCAGAGCCTTTTGGGGCTTCGATTTGAAGCTTTCCGTCGTTGGAAATCGCAGATCTGAGAGCAGTCAAATCAACGTCCTCTGGCATCAGGAACATCTTCGAGAAGCATCTTTTCGAATATCCATGCTCAGATTTCATCTCTTGACATCCTTCGATTTTAAGCTCTCTTCCATCCAATTGAATCTTCATATCTTCTGGTCTGAAATGAGATACATCCAATTGGACAGCATATTTTGAGTCGTCGTTGATGACCTGAAATGAGGAACTTGAATGAAACTTACTATTAGTAATAGTCTTCCACTCACCTCTCCAACAGTATCAGAAAAATTGAAAGAGCTGTGATCTGCATCTCTCCAATAAGGGAGAACAGATCTTCGGGAAAAATCATCAAAAAAGTGATCAGAAGAGCGAGATCTTCCGTAAGGGGTACGATAAACCATCATTGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 194 129 116 50 13</canonical_bands>
                <polymorphic_bands>511 194 129 116 50</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAAACATCTTCAAGGTTCAAAG</pcr_primer_p1>
		<pcr_primer_p2>CCAACAGTTCTCGTGCTATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTAAACATCTTCAAGGTTCAAAGCAGTTTTCATTGTAGAGAATAAATTTTTGATGCCACACCAACTGCAGTCGCTGCTTGCTCATCCGAAAAACTTCATTTGATTTTTATGTCGCAAACATATTACATTGTACACAGAGATCTGGTTAAATTTAATATATATTGAGTATCAAAATCAAAGTAAACAGGTCAGGTTTACAAGTCAATGTTTTTCAACGAAGCTAATTGGAATAGCACGAGAACTGTTGG</canonical_amplicon>
		<polymorphic_amplicon>GTAAACATCTTCAAGGTTCAAAGCAGTTTTCATTGTAGAGAATAAATTTTTGATGCCACACCAACTGCAGTCGCTGCTTGCTCATCCGAAAAACTTCATTTGATTTTTATGTCGCAAACATATTACATTGTACACAGAGATCTGGTTAAATTTAATATATATTGAGTATCAAAATCAAAGTAAACAGGTCAGRTTTACAAGTCAATGTTTTTCAACGAAGCTAATTGGAATAGCACGAGAACTGTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19370</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>480736</contig_pos>
        <strand>+</strand>
        <context>TTGATGCCAC[A/C]CCAACTGCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCAAGGTTCAAAGCAGTTTTCATTGTAGAGAATAAATTTTTGATGCCAC</left_flank>
        <right_flank>CCAACTGCAGTCGCTGCTTGCTCATCCGAAAAACTTCATTTGATTTTTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTAAGTGATCACTAGCATCTCTAGAATCTGTTTTTCGGTGAAAAACCGAACTTAATTGCGGAAGTAGCTCGAACGAGGTAAAAGCCTGAAATGTTACGATTTTGCCGCACTTTTTCGTAGATCAAAAAAGCGATGGTTTTCAAACTCTCAGGTCCCCACTTGGNNNNNNNNNNTAGATCATGATCTAGTTCAAACCCGCGTTCATTTTGAAATTATTAAATTTCTTCTGGCCTACAAGTTTGCTGGGGCGCTTTTTCTGACCCCCTAGCTTGAACCCAAGTGGGTCCCAGCTTTTTTTTAAATCGACAATATCCCATTTGATGTAAACTTTGAGCACTTTTTTTTTCAACTTTTCAGTTTTCTTCGGGATTTTTGAATACATTTCACACCCTTTGGAAAAAATATCACTTTGAACCATAATGATAGTTTTCAGAATTGGTAAACATCTTCAAGGTTCAAAGCAGTTTTCATTGTAGAGAATAAATTTTTGATGCCACACCAACTGCAGTCGCTGCTTGCTCATCCGAAAAACTTCATTTGATTTTTATGTCGCAAACATATTACATTGTACACAGAGATCTGGTTAAATTTAATATATATTGAGTATCAAAATCAAAGTAAACAGGTCAGGTTTACAAGTCAATGTTTTTCAACGAAGCTAATTGGAATAGCACGAGAACTGTTGGCAGAGCCTTTTGGGGCTTCGATTTGAAGCTTTCCGTCGTTGGAAATCGCAGATCTGAGAGCAGTCAAATCAACGTCCTCTGGCATCAGGAACATCTTCGAGAAGCATCTTTTCGAATATCCATGCTCAGATTTCATCTCTTGACATCCTTCGATTTTAAGCTCTCTTCCATCCAATTGAATCTTCATATCTTCTGGTCTGAAATGAGATACATCCAATTGGACAGCATATTTTGAGTCGTCGTTGATGACCTGAAATGAGGAACTTGAATGAAACTTACTATTAGTAATAGTCTTCCACTCACCTCTCCAAC</canonical>
            <polymorphic>ATGTAAGTGATCACTAGCATCTCTAGAATCTGTTTTTCGGTGAAAAACCGAACTTAATTGCGGAAGTAGCTCGAACGAGGTAAAAGCCTGAAATGTTACGATTTTGCCGCACTTTTTCGTAGATCAAAAAAGCGATGGTTTTCAAACTCTCAGGTCCCCACTTGGNNNNNNNNNNTAGATCATGATCTAGTTCAAACCCGCGTTCATTTTGAAATTATTAAATTTCTTCTGGCCTACAAGTTTGCTGGGGCGCTTTTTCTGACCCCCTAGCTTGAACCCAAGTGGGTCCCAGCTTTTTTTTAAATCGACAATATCCCATTTGATGTAAACTTTGAGCACTTTTTTTTTCAACTTTTCAGTTTTCTTCGGGATTTTTGAATACATTTCACACCCTTTGGAAAAAATATCACTTTGAACCATAATGATAGTTTTCAGAATTGGTAAACATCTTCAAGGTTCAAAGCAGTTTTCATTGTAGAGAATAAATTTTTGATGCCACMCCAACTGCAGTCGCTGCTTGCTCATCCGAAAAACTTCATTTGATTTTTATGTCGCAAACATATTACATTGTACACAGAGATCTGGTTAAATTTAATATATATTGAGTATCAAAATCAAAGTAAACAGGTCAGGTTTACAAGTCAATGTTTTTCAACGAAGCTAATTGGAATAGCACGAGAACTGTTGGCAGAGCCTTTTGGGGCTTCGATTTGAAGCTTTCCGTCGTTGGAAATCGCAGATCTGAGAGCAGTCAAATCAACGTCCTCTGGCATCAGGAACATCTTCGAGAAGCATCTTTTCGAATATCCATGCTCAGATTTCATCTCTTGACATCCTTCGATTTTAAGCTCTCTTCCATCCAATTGAATCTTCATATCTTCTGGTCTGAAATGAGATACATCCAATTGGACAGCATATTTTGAGTCGTCGTTGATGACCTGAAATGAGGAACTTGAATGAAACTTACTATTAGTAATAGTCTTCCACTCACCTCTCCAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>311 124 101 89 74 69 54 50 49 29 19 10 9 4 4 2 2</canonical_bands>
                <polymorphic_bands>311 124 101 89 76 69 54 50 49 29 19 10 9 4 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTGATGTAAACTTTGAGCACT</pcr_primer_p1>
		<pcr_primer_p2>AATATGTTTGCGACATAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTTGATGTAAACTTTGAGCACTTTTTTTTTCAACTTTTCAGTTTTCTTCGGGATTTTTGAATACATTTCACACCCTTTGGAAAAAATATCACTTTGAACCATAATGATAGTTTTCAGAATTGGTAAACATCTTCAAGGTTCAAAGCAGTTTTCATTGTAGAGAATAAATTTTTGATGCCACACCAACTGCAGTCGCTGCTTGCTCATCCGAAAAACTTCATTTGATTTTTATGTCGCAAACATATT</canonical_amplicon>
		<polymorphic_amplicon>ATTTGATGTAAACTTTGAGCACTTTTTTTTTCAACTTTTCAGTTTTCTTCGGGATTTTTGAATACATTTCACACCCTTTGGAAAAAATATCACTTTGAACCATAATGATAGTTTTCAGAATTGGTAAACATCTTCAAGGTTCAAAGCAGTTTTCATTGTAGAGAATAAATTTTTGATGCCACMCCAACTGCAGTCGCTGCTTGCTCATCCGAAAAACTTCATTTGATTTTTATGTCGCAAACATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19371</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>480716</contig_pos>
        <strand>+</strand>
        <context>TCATTGTAGA[G/T]AATAAATTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCAGAATTGGTAAACATCTTCAAGGTTCAAAGCAGTTTTCATTGTAGA</left_flank>
        <right_flank>AATAAATTTTTGATGCCACACCAACTGCAGTCGCTGCTTGCTCATCCGAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAATTCTGATTTCTTGGTATGTAAGTGATCACTAGCATCTCTAGAATCTGTTTTTCGGTGAAAAACCGAACTTAATTGCGGAAGTAGCTCGAACGAGGTAAAAGCCTGAAATGTTACGATTTTGCCGCACTTTTTCGTAGATCAAAAAAGCGATGGTTTTCAAACTCTCAGGTCCCCACTTGGNNNNNNNNNNTAGATCATGATCTAGTTCAAACCCGCGTTCATTTTGAAATTATTAAATTTCTTCTGGCCTACAAGTTTGCTGGGGCGCTTTTTCTGACCCCCTAGCTTGAACCCAAGTGGGTCCCAGCTTTTTTTTAAATCGACAATATCCCATTTGATGTAAACTTTGAGCACTTTTTTTTTCAACTTTTCAGTTTTCTTCGGGATTTTTGAATACATTTCACACCCTTTGGAAAAAATATCACTTTGAACCATAATGATAGTTTTCAGAATTGGTAAACATCTTCAAGGTTCAAAGCAGTTTTCATTGTAGAGAATAAATTTTTGATGCCACACCAACTGCAGTCGCTGCTTGCTCATCCGAAAAACTTCATTTGATTTTTATGTCGCAAACATATTACATTGTACACAGAGATCTGGTTAAATTTAATATATATTGAGTATCAAAATCAAAGTAAACAGGTCAGGTTTACAAGTCAATGTTTTTCAACGAAGCTAATTGGAATAGCACGAGAACTGTTGGCAGAGCCTTTTGGGGCTTCGATTTGAAGCTTTCCGTCGTTGGAAATCGCAGATCTGAGAGCAGTCAAATCAACGTCCTCTGGCATCAGGAACATCTTCGAGAAGCATCTTTTCGAATATCCATGCTCAGATTTCATCTCTTGACATCCTTCGATTTTAAGCTCTCTTCCATCCAATTGAATCTTCATATCTTCTGGTCTGAAATGAGATACATCCAATTGGACAGCATATTTTGAGTCGTCGTTGATGACCTGAAATGAGGAACTTGAATGAAACTTACTATTAGTAATAGT</canonical>
            <polymorphic>CCAAATTCTGATTTCTTGGTATGTAAGTGATCACTAGCATCTCTAGAATCTGTTTTTCGGTGAAAAACCGAACTTAATTGCGGAAGTAGCTCGAACGAGGTAAAAGCCTGAAATGTTACGATTTTGCCGCACTTTTTCGTAGATCAAAAAAGCGATGGTTTTCAAACTCTCAGGTCCCCACTTGGNNNNNNNNNNTAGATCATGATCTAGTTCAAACCCGCGTTCATTTTGAAATTATTAAATTTCTTCTGGCCTACAAGTTTGCTGGGGCGCTTTTTCTGACCCCCTAGCTTGAACCCAAGTGGGTCCCAGCTTTTTTTTAAATCGACAATATCCCATTTGATGTAAACTTTGAGCACTTTTTTTTTCAACTTTTCAGTTTTCTTCGGGATTTTTGAATACATTTCACACCCTTTGGAAAAAATATCACTTTGAACCATAATGATAGTTTTCAGAATTGGTAAACATCTTCAAGGTTCAAAGCAGTTTTCATTGTAGAKAATAAATTTTTGATGCCACACCAACTGCAGTCGCTGCTTGCTCATCCGAAAAACTTCATTTGATTTTTATGTCGCAAACATATTACATTGTACACAGAGATCTGGTTAAATTTAATATATATTGAGTATCAAAATCAAAGTAAACAGGTCAGGTTTACAAGTCAATGTTTTTCAACGAAGCTAATTGGAATAGCACGAGAACTGTTGGCAGAGCCTTTTGGGGCTTCGATTTGAAGCTTTCCGTCGTTGGAAATCGCAGATCTGAGAGCAGTCAAATCAACGTCCTCTGGCATCAGGAACATCTTCGAGAAGCATCTTTTCGAATATCCATGCTCAGATTTCATCTCTTGACATCCTTCGATTTTAAGCTCTCTTCCATCCAATTGAATCTTCATATCTTCTGGTCTGAAATGAGATACATCCAATTGGACAGCATATTTTGAGTCGTCGTTGATGACCTGAAATGAGGAACTTGAATGAAACTTACTATTAGTAATAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGATGTAAACTTTGAGCACT</pcr_primer_p1>
		<pcr_primer_p2>AATATGTTTGCGACATAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTTGATGTAAACTTTGAGCACTTTTTTTTTCAACTTTTCAGTTTTCTTCGGGATTTTTGAATACATTTCACACCCTTTGGAAAAAATATCACTTTGAACCATAATGATAGTTTTCAGAATTGGTAAACATCTTCAAGGTTCAAAGCAGTTTTCATTGTAGAGAATAAATTTTTGATGCCACACCAACTGCAGTCGCTGCTTGCTCATCCGAAAAACTTCATTTGATTTTTATGTCGCAAACATATT</canonical_amplicon>
		<polymorphic_amplicon>ATTTGATGTAAACTTTGAGCACTTTTTTTTTCAACTTTTCAGTTTTCTTCGGGATTTTTGAATACATTTCACACCCTTTGGAAAAAATATCACTTTGAACCATAATGATAGTTTTCAGAATTGGTAAACATCTTCAAGGTTCAAAGCAGTTTTCATTGTAGAKAATAAATTTTTGATGCCACACCAACTGCAGTCGCTGCTTGCTCATCCGAAAAACTTCATTTGATTTTTATGTCGCAAACATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19373</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>490217</contig_pos>
        <strand>+</strand>
        <context>GCTGAAAAAT[G/T]AGATGTTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCTGGGAGACAGTGATTGATGAAGACGTCTTCGAGAATTGCTGAAAAAT</left_flank>
        <right_flank>AGATGTTTTAGCTTGCTTTTCCCTCTAATAGAGGATTCTTACGAATGATG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTTCAGCTATACCTGAATGCTAATCTCTCAATTTCCTCAACCATAACAAGTCTCATAGCTGGATGCTTCCTAGCGATACCTTCTAGAAGCGTCGTAACGAATGCTCCGATTTTGTAGTTTGGATGACCGAACGCATTGACAAGCGACGAAAGAATCAACTGAAATTTATAGATAAAATTAAAACGACGGCTAGAATCCTTTTACATTCTCAGATTCCGGTCTACCCATTAAGCAATTCGCCAACGTCTTCAACGATCTTTTGATAACCTCTTCTAGCGGTCTTTTGATGATTTCAATGAGAGTTTCGATGAATTGTTGATACAGAATTTTGAGTTCATGCTCGAAAGCCCACATCAAAAGAATTTTACGGCGAGAACGGTTGTTTCCAGACGAGAGTTCGGTTAGCTCTTTCAGTGCACGCTTCGAGAATGGAATCAGCTTCCGGTTTTCTGGGAGACAGTGATTGATGAAGACGTCTTCGAGAATTGCTGAAAAATTAGATGTTTTAGCTTGCTTTTCCCTCTAATAGAGGATTCTTACGAATGATGTCGACCACATCTCTGGTTCCTTGTTTTTTACAAGAAGCGATGAGTTTCTCAACGTATTCCAACGAGTGAACAGGTGATTTGTGCATTTGAAGTTGCATTGCGGTTCTCTTATCAGCAGCTGTTCCTTTAGAAATCACCGAATAAAGCCATGATGCTTCCGATCCGTTCTCTTGTTTGTCTTTGGTTTGAAGAAGAGCTGAATCTTGCGCCAACGCGTCTTTTCCCTCTTCAAGAAGCTTCTGAATGTCTGTGGCACTCATCTTCTCGGTTTTCTCATCATGAACATGGTCGATTTGGTAGCTGTACCATTTTGAACCTTCTTGATGCTTTACGAGGAGACCATCTTGTCCCAGAATCTTTTTCAACTGACGTTTCGGGTTCGAGGCTTCTGTTGGTTTTGGAGGCGGGGCAGAGAATCCATTGGTTTTTCCATTTTGATGTTTCTTCTTT</canonical>
            <polymorphic>AGTTTCAGCTATACCTGAATGCTAATCTCTCAATTTCCTCAACCATAACAAGTCTCATAGCTGGATGCTTCCTAGCGATACCTTCTAGAAGCGTCGTAACGAATGCTCCGATTTTGTAGTTTGGATGACCGAACGCATTGACAAGCGACGAAAGAATCAACTGAAATTTATAGATAAAATTAAAACGACGGCTAGAATCCTTTTACATTCTCAGATTCCGGTCTACCCATTAAGCAATTCGCCAACGTCTTCAACGATCTTTTGATAACCTCTTCTAGCGGTCTTTTGATGATTTCAATGAGAGTTTCGATGAATTGTTGATACAGAATTTTGAGTTCATGCTCGAAAGCCCACATCAAAAGAATTTTACGGCGAGAACGGTTGTTTCCAGACGAGAGTTCGGTTAGCTCTTTCAGTGCACGCTTCGAGAATGGAATCAGCTTCCGGTTTTCTGGGAGACAGTGATTGATGAAGACGTCTTCGAGAATTGCTGAAAAATKAGATGTTTTAGCTTGCTTTTCCCTCTAATAGAGGATTCTTACGAATGATGTCGACCACATCTCTGGTTCCTTGTTTTTTACAAGAAGCGATGAGTTTCTCAACGTATTCCAACGAGTGAACAGGTGATTTGTGCATTTGAAGTTGCATTGCGGTTCTCTTATCAGCAGCTGTTCCTTTAGAAATCACCGAATAAAGCCATGATGCTTCCGATCCGTTCTCTTGTTTGTCTTTGGTTTGAAGAAGAGCTGAATCTTGCGCCAACGCGTCTTTTCCCTCTTCAAGAAGCTTCTGAATGTCTGTGGCACTCATCTTCTCGGTTTTCTCATCATGAACATGGTCGATTTGGTAGCTGTACCATTTTGAACCTTCTTGATGCTTTACGAGGAGACCATCTTGTCCCAGAATCTTTTTCAACTGACGTTTCGGGTTCGAGGCTTCTGTTGGTTTTGGAGGCGGGGCAGAGAATCCATTGGTTTTTCCATTTTGATGTTTCTTCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>504 133 123 77 58 36 31 14 13 11</canonical_bands>
                <polymorphic_bands>515 133 123 77 58 36 31 14 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACATCAAAAGAATTTTACG</pcr_primer_p1>
		<pcr_primer_p2>AGAAACTCATCGCTTCTTGTAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCACATCAAAAGAATTTTACGGCGAGAACGGTTGTTTCCAGACGAGAGTTCGGTTAGCTCTTTCAGTGCACGCTTCGAGAATGGAATCAGCTTCCGGTTTTCTGGGAGACAGTGATTGATGAAGACGTCTTCGAGAATTGCTGAAAAATTAGATGTTTTAGCTTGCTTTTCCCTCTAATAGAGGATTCTTACGAATGATGTCGACCACATCTCTGGTTCCTTGTTTTTTACAAGAAGCGATGAGTTTCT</canonical_amplicon>
		<polymorphic_amplicon>CCACATCAAAAGAATTTTACGGCGAGAACGGTTGTTTCCAGACGAGAGTTCGGTTAGCTCTTTCAGTGCACGCTTCGAGAATGGAATCAGCTTCCGGTTTTCTGGGAGACAGTGATTGATGAAGACGTCTTCGAGAATTGCTGAAAAATKAGATGTTTTAGCTTGCTTTTCCCTCTAATAGAGGATTCTTACGAATGATGTCGACCACATCTCTGGTTCCTTGTTTTTTACAAGAAGCGATGAGTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19374</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>492923</contig_pos>
        <strand></strand>
        <context>TTTTTTCAAA[T/C]GGTACATGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCAATTTTTTTTCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAA</left_flank>
        <right_flank>GGTACATGATTTTTAAAGACTTTTCTCGTCGTATCTCATTTTTTTCTCAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAAATTATTCTGTTTGTAATTAAGGTTGAATTCGAAATTAGGTAAACCTGTTCTGTGCTTGAGAAAGTGAAATTCCCGTCGTCATTGCATTCGAACTTGTCATTGAATGAGCGGAATGGAACTGGAGTTGTCATTTTCGCTAAATTAGGTTTTATTTATTGAGAGAATTGCAATAGAAAACGCTTTGCAATCAGGGAACAGCGGAAAAAATAAATATTCCAAATTGCTAAACAACGCGCGGGCGTCATGAGCGGAGTGTCGTTGTTTCCGTCTGATTTTTTCTTTTTCTTCTGTTGTTGCGAACGTTCTTTCTCATCAAAAATCGTAGTGATTGCAAACTTTTTTTTGCTTTATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAACTCAATTTTTTTTCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAATGGTACATGATTTTTAAAGACTTTTCTCGTCGTATCTCATTTTTTTCTCATTGATTCTCATCAATTGCGATTCCAAAATTTAACGAATTTTAAGGTAATGTCGAAGTTCCCGGTGCCGTTGAGAACGATTGGTGGGCTCCGTCCATCGGCCACCGCCGCCATTTCAGCGGCCAATATCGGTTTCACACAATCGAGCCGCGCCTTGAACACCTCTACGAAGAGCTCCGCTCTCGTTGGACAAGTTGCTCGCCAATACCCAAATGCGGCCGCTTTCAGCATTAAGCAGGTTCGCCTTTACAGCAGCAGTGAGTTACCTAAAATTTTATTCACCGAAACGAACAAAACGCATTTTCAGACAACCTGCCAAAGCACAACCGAGTAGCTCTCCCAGCGCTGTCGCCAACTATGGAACTCGGAACTGTTGTCAGTTGGCAAAAGAAAGAAGGAGATCAGCTCAGCGAGGGAGATTTGCTCTGCGAAATTGAAACCGACAAGGCCACT</canonical>
            <polymorphic>CTGAAATTATTCTGTTTGTAATTAAGGTTGAATTCGAAATTAGGTAAACCTGTTCTGTGCTTGAGAAAGTGAAATTCCCGTCGTCATTGCATTCGAACTTGTCATTGAATGAGCGGAATGGAACTGGAGTTGTCATTTTCGCTAAATTAGGTTTTATTTATTGAGAGAATTGCAATAGAAAACGCTTTGCAATCAGGGAACAGCGGAAAAAATAAATATTCCAAATTGCTAAACAACGCGCGGGCGTCATGAGCGGAGTGTCGTTGTTTCCGTCTGATTTTTTCTTTTTCTTCTGTTGTTGCGAACGTTCTTTCTCATCAAAAATCGTAGTGATTGCAAACTTTTTTTTGCTTTATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAACTCAATTTTTTTTCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAAYGGTACATGATTTTTAAAGACTTTTCTCGTCGTATCTCATTTTTTTCTCATTGATTCTCATCAATTGCGATTCCAAAATTTAACGAATTTTAAGGTAATGTCGAAGTTCCCGGTGCCGTTGAGAACGATTGGTGGGCTCCGTCCATCGGCCACCGCCGCCATTTCAGCGGCCAATATCGGTTTCACACAATCGAGCCGCGCCTTGAACACCTCTACGAAGAGCTCCGCTCTCGTTGGACAAGTTGCTCGCCAATACCCAAATGCGGCCGCTTTCAGCATTAAGCAGGTTCGCCTTTACAGCAGCAGTGAGTTACCTAAAATTTTATTCACCGAAACGAACAAAACGCATTTTCAGACAACCTGCCAAAGCACAACCGAGTAGCTCTCCCAGCGCTGTCGCCAACTATGGAACTCGGAACTGTTGTCAGTTGGCAAAAGAAAGAAGGAGATCAGCTCAGCGAGGGAGATTTGCTCTGCGAAATTGAAACCGACAAGGCCACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAGTTTTGATAGTGTGCCTAA</pcr_primer_p1>
		<pcr_primer_p2>CGACATTACCTTAAAATTCGTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAACTCAATTTTTTTTCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAATGGTACATGATTTTTAAAGACTTTTCTCGTCGTATCTCATTTTTTTCTCATTGATTCTCATCAATTGCGATTCCAAAATTTAACGAATTTTAAGGTAATGTCG</canonical_amplicon>
		<polymorphic_amplicon>ATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAACTCAATTTTTTTTCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAAYGGTACATGATTTTTAAAGACTTTTCTCGTCGTATCTCATTTTTTTCTCATTGATTCTCATCAATTGCGATTCCAAAATTTAACGAATTTTAAGGTAATGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19375</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>492910</contig_pos>
        <strand></strand>
        <context>TGCCCGCAGT[T/A]ATTTTTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTTCGGGTAAACTCAATTTTTTTTCAAATAGGTGATTGTTGCCCGCAGT</left_flank>
        <right_flank>ATTTTTTTCAAATGGTACATGATTTTTAAAGACTTTTCTCGTCGTATCTC</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCAATCCGTTTCTGAAATTATTCTGTTTGTAATTAAGGTTGAATTCGAAATTAGGTAAACCTGTTCTGTGCTTGAGAAAGTGAAATTCCCGTCGTCATTGCATTCGAACTTGTCATTGAATGAGCGGAATGGAACTGGAGTTGTCATTTTCGCTAAATTAGGTTTTATTTATTGAGAGAATTGCAATAGAAAACGCTTTGCAATCAGGGAACAGCGGAAAAAATAAATATTCCAAATTGCTAAACAACGCGCGGGCGTCATGAGCGGAGTGTCGTTGTTTCCGTCTGATTTTTTCTTTTTCTTCTGTTGTTGCGAACGTTCTTTCTCATCAAAAATCGTAGTGATTGCAAACTTTTTTTTGCTTTATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAACTCAATTTTTTTTCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAATGGTACATGATTTTTAAAGACTTTTCTCGTCGTATCTCATTTTTTTCTCATTGATTCTCATCAATTGCGATTCCAAAATTTAACGAATTTTAAGGTAATGTCGAAGTTCCCGGTGCCGTTGAGAACGATTGGTGGGCTCCGTCCATCGGCCACCGCCGCCATTTCAGCGGCCAATATCGGTTTCACACAATCGAGCCGCGCCTTGAACACCTCTACGAAGAGCTCCGCTCTCGTTGGACAAGTTGCTCGCCAATACCCAAATGCGGCCGCTTTCAGCATTAAGCAGGTTCGCCTTTACAGCAGCAGTGAGTTACCTAAAATTTTATTCACCGAAACGAACAAAACGCATTTTCAGACAACCTGCCAAAGCACAACCGAGTAGCTCTCCCAGCGCTGTCGCCAACTATGGAACTCGGAACTGTTGTCAGTTGGCAAAAGAAAGAAGGAGATCAGCTCAGCGAGGGAGATTTGCTCTGCGAAATTGAAAC</canonical>
            <polymorphic>CTTCAATCCGTTTCTGAAATTATTCTGTTTGTAATTAAGGTTGAATTCGAAATTAGGTAAACCTGTTCTGTGCTTGAGAAAGTGAAATTCCCGTCGTCATTGCATTCGAACTTGTCATTGAATGAGCGGAATGGAACTGGAGTTGTCATTTTCGCTAAATTAGGTTTTATTTATTGAGAGAATTGCAATAGAAAACGCTTTGCAATCAGGGAACAGCGGAAAAAATAAATATTCCAAATTGCTAAACAACGCGCGGGCGTCATGAGCGGAGTGTCGTTGTTTCCGTCTGATTTTTTCTTTTTCTTCTGTTGTTGCGAACGTTCTTTCTCATCAAAAATCGTAGTGATTGCAAACTTTTTTTTGCTTTATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAACTCAATTTTTTTTCAAATAGGTGATTGTTGCCCGCAGTWATTTTTTTCAAATGGTACATGATTTTTAAAGACTTTTCTCGTCGTATCTCATTTTTTTCTCATTGATTCTCATCAATTGCGATTCCAAAATTTAACGAATTTTAAGGTAATGTCGAAGTTCCCGGTGCCGTTGAGAACGATTGGTGGGCTCCGTCCATCGGCCACCGCCGCCATTTCAGCGGCCAATATCGGTTTCACACAATCGAGCCGCGCCTTGAACACCTCTACGAAGAGCTCCGCTCTCGTTGGACAAGTTGCTCGCCAATACCCAAATGCGGCCGCTTTCAGCATTAAGCAGGTTCGCCTTTACAGCAGCAGTGAGTTACCTAAAATTTTATTCACCGAAACGAACAAAACGCATTTTCAGACAACCTGCCAAAGCACAACCGAGTAGCTCTCCCAGCGCTGTCGCCAACTATGGAACTCGGAACTGTTGTCAGTTGGCAAAAGAAAGAAGGAGATCAGCTCAGCGAGGGAGATTTGCTCTGCGAAATTGAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAGTTTTGATAGTGTGCCTAA</pcr_primer_p1>
		<pcr_primer_p2>CGACATTACCTTAAAATTCGTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAACTCAATTTTTTTTCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAATGGTACATGATTTTTAAAGACTTTTCTCGTCGTATCTCATTTTTTTCTCATTGATTCTCATCAATTGCGATTCCAAAATTTAACGAATTTTAAGGTAATGTCG</canonical_amplicon>
		<polymorphic_amplicon>ATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAACTCAATTTTTTTTCAAATAGGTGATTGTTGCCCGCAGTWATTTTTTTCAAATGGTACATGATTTTTAAAGACTTTTCTCGTCGTATCTCATTTTTTTCTCATTGATTCTCATCAATTGCGATTCCAAAATTTAACGAATTTTAAGGTAATGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19376</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>492872</contig_pos>
        <strand>+</strand>
        <context>TTCGGGTAAA[C/T]TCAAWTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAA</left_flank>
        <right_flank>TCAATTTTTTTTCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCAATACTAACGAATTGTAATTTTCGAATAGCATTGCTTCAATCCGTTTCTGAAATTATTCTGTTTGTAATTAAGGTTGAATTCGAAATTAGGTAAACCTGTTCTGTGCTTGAGAAAGTGAAATTCCCGTCGTCATTGCATTCGAACTTGTCATTGAATGAGCGGAATGGAACTGGAGTTGTCATTTTCGCTAAATTAGGTTTTATTTATTGAGAGAATTGCAATAGAAAACGCTTTGCAATCAGGGAACAGCGGAAAAAATAAATATTCCAAATTGCTAAACAACGCGCGGGCGTCATGAGCGGAGTGTCGTTGTTTCCGTCTGATTTTTTCTTTTTCTTCTGTTGTTGCGAACGTTCTTTCTCATCAAAAATCGTAGTGATTGCAAACTTTTTTTTGCTTTATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAACTCAATTTTTTTTCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAATGGTACATGATTTTTAAAGACTTTTCTCGTCGTATCTCATTTTTTTCTCATTGATTCTCATCAATTGCGATTCCAAAATTTAACGAATTTTAAGGTAATGTCGAAGTTCCCGGTGCCGTTGAGAACGATTGGTGGGCTCCGTCCATCGGCCACCGCCGCCATTTCAGCGGCCAATATCGGTTTCACACAATCGAGCCGCGCCTTGAACACCTCTACGAAGAGCTCCGCTCTCGTTGGACAAGTTGCTCGCCAATACCCAAATGCGGCCGCTTTCAGCATTAAGCAGGTTCGCCTTTACAGCAGCAGTGAGTTACCTAAAATTTTATTCACCGAAACGAACAAAACGCATTTTCAGACAACCTGCCAAAGCACAACCGAGTAGCTCTCCCAGCGCTGTCGCCAACTATGGAACTCGGAACTGTTGTCAGTTGGCAAAAGAAAGAAGGAGAT</canonical>
            <polymorphic>TTCCAATACTAACGAATTGTAATTTTCGAATAGCATTGCTTCAATCCGTTTCTGAAATTATTCTGTTTGTAATTAAGGTTGAATTCGAAATTAGGTAAACCTGTTCTGTGCTTGAGAAAGTGAAATTCCCGTCGTCATTGCATTCGAACTTGTCATTGAATGAGCGGAATGGAACTGGAGTTGTCATTTTCGCTAAATTAGGTTTTATTTATTGAGAGAATTGCAATAGAAAACGCTTTGCAATCAGGGAACAGCGGAAAAAATAAATATTCCAAATTGCTAAACAACGCGCGGGCGTCATGAGCGGAGTGTCGTTGTTTCCGTCTGATTTTTTCTTTTTCTTCTGTTGTTGCGAACGTTCTTTCTCATCAAAAATCGTAGTGATTGCAAACTTTTTTTTGCTTTATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAAYTCAATTTTTTTTCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAATGGTACATGATTTTTAAAGACTTTTCTCGTCGTATCTCATTTTTTTCTCATTGATTCTCATCAATTGCGATTCCAAAATTTAACGAATTTTAAGGTAATGTCGAAGTTCCCGGTGCCGTTGAGAACGATTGGTGGGCTCCGTCCATCGGCCACCGCCGCCATTTCAGCGGCCAATATCGGTTTCACACAATCGAGCCGCGCCTTGAACACCTCTACGAAGAGCTCCGCTCTCGTTGGACAAGTTGCTCGCCAATACCCAAATGCGGCCGCTTTCAGCATTAAGCAGGTTCGCCTTTACAGCAGCAGTGAGTTACCTAAAATTTTATTCACCGAAACGAACAAAACGCATTTTCAGACAACCTGCCAAAGCACAACCGAGTAGCTCTCCCAGCGCTGTCGCCAACTATGGAACTCGGAACTGTTGTCAGTTGGCAAAAGAAAGAAGGAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>503 400 97</canonical_bands>
                <polymorphic_bands>903 97</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAGTTTTGATAGTGTGCCTAA</pcr_primer_p1>
		<pcr_primer_p2>CGACATTACCTTAAAATTCGTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAACTCAATTTTTTTTCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAATGGTACATGATTTTTAAAGACTTTTCTCGTCGTATCTCATTTTTTTCTCATTGATTCTCATCAATTGCGATTCCAAAATTTAACGAATTTTAAGGTAATGTCG</canonical_amplicon>
		<polymorphic_amplicon>ATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAAYTCAATTTTTTTTCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAATGGTACATGATTTTTAAAGACTTTTCTCGTCGTATCTCATTTTTTTCTCATTGATTCTCATCAATTGCGATTCCAAAATTTAACGAATTTTAAGGTAATGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19377</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>492768</contig_pos>
        <strand>+</strand>
        <context>TGCAAACTTT[C/T]TTTTGCTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTGTTGCGAACGTTCTTTCTCATCAAAAATCGTAGTGATTGCAAACTTT</left_flank>
        <right_flank>TTTTGCTTTATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGCTTGGCGGGCAGTTCTTGAGGTATCTGAGCAAATAGGCAGTATGTCGCTGGCGCAGAACAGTCAACTGAGAGGCATCCTCGTCCCCAGTGGCTTCAAACGGTTCCAATACTAACGAATTGTAATTTTCGAATAGCATTGCTTCAATCCGTTTCTGAAATTATTCTGTTTGTAATTAAGGTTGAATTCGAAATTAGGTAAACCTGTTCTGTGCTTGAGAAAGTGAAATTCCCGTCGTCATTGCATTCGAACTTGTCATTGAATGAGCGGAATGGAACTGGAGTTGTCATTTTCGCTAAATTAGGTTTTATTTATTGAGAGAATTGCAATAGAAAACGCTTTGCAATCAGGGAACAGCGGAAAAAATAAATATTCCAAATTGCTAAACAACGCGCGGGCGTCATGAGCGGAGTGTCGTTGTTTCCGTCTGATTTTTTCTTTTTCTTCTGTTGTTGCGAACGTTCTTTCTCATCAAAAATCGTAGTGATTGCAAACTTTTTTTTGCTTTATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAACTCAATTTTTTTTCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAATGGTACATGATTTTTAAAGACTTTTCTCGTCGTATCTCATTTTTTTCTCATTGATTCTCATCAATTGCGATTCCAAAATTTAACGAATTTTAAGGTAATGTCGAAGTTCCCGGTGCCGTTGAGAACGATTGGTGGGCTCCGTCCATCGGCCACCGCCGCCATTTCAGCGGCCAATATCGGTTTCACACAATCGAGCCGCGCCTTGAACACCTCTACGAAGAGCTCCGCTCTCGTTGGACAAGTTGCTCGCCAATACCCAAATGCGGCCGCTTTCAGCATTAAGCAGGTTCGCCTTTACAGCAGCAGTGAGTTACCTAAAATTTTATTCACCGAAACGAACAAAACG</canonical>
            <polymorphic>TAGCTTGGCGGGCAGTTCTTGAGGTATCTGAGCAAATAGGCAGTATGTCGCTGGCGCAGAACAGTCAACTGAGAGGCATCCTCGTCCCCAGTGGCTTCAAACGGTTCCAATACTAACGAATTGTAATTTTCGAATAGCATTGCTTCAATCCGTTTCTGAAATTATTCTGTTTGTAATTAAGGTTGAATTCGAAATTAGGTAAACCTGTTCTGTGCTTGAGAAAGTGAAATTCCCGTCGTCATTGCATTCGAACTTGTCATTGAATGAGCGGAATGGAACTGGAGTTGTCATTTTCGCTAAATTAGGTTTTATTTATTGAGAGAATTGCAATAGAAAACGCTTTGCAATCAGGGAACAGCGGAAAAAATAAATATTCCAAATTGCTAAACAACGCGCGGGCGTCATGAGCGGAGTGTCGTTGTTTCCGTCTGATTTTTTCTTTTTCTTCTGTTGTTGCGAACGTTCTTTCTCATCAAAAATCGTAGTGATTGCAAACTTTYTTTTGCTTTATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAACTCAATTTTTTTTCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAATGGTACATGATTTTTAAAGACTTTTCTCGTCGTATCTCATTTTTTTCTCATTGATTCTCATCAATTGCGATTCCAAAATTTAACGAATTTTAAGGTAATGTCGAAGTTCCCGGTGCCGTTGAGAACGATTGGTGGGCTCCGTCCATCGGCCACCGCCGCCATTTCAGCGGCCAATATCGGTTTCACACAATCGAGCCGCGCCTTGAACACCTCTACGAAGAGCTCCGCTCTCGTTGGACAAGTTGCTCGCCAATACCCAAATGCGGCCGCTTTCAGCATTAAGCAGGTTCGCCTTTACAGCAGCAGTGAGTTACCTAAAATTTTATTCACCGAAACGAACAAAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGAGAATTGCAATAGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GATTTTCTTCGAGTTTCTGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGAGAGAATTGCAATAGAAAACGCTTTGCAATCAGGGAACAGCGGAAAAAATAAATATTCCAAATTGCTAAACAACGCGCGGGCGTCATGAGCGGAGTGTCGTTGTTTCCGTCTGATTTTTTCTTTTTCTTCTGTTGTTGCGAACGTTCTTTCTCATCAAAAATCGTAGTGATTGCAAACTTTTTTTTGCTTTATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATC</canonical_amplicon>
		<polymorphic_amplicon>TTGAGAGAATTGCAATAGAAAACGCTTTGCAATCAGGGAACAGCGGAAAAAATAAATATTCCAAATTGCTAAACAACGCGCGGGCGTCATGAGCGGAGTGTCGTTGTTTCCGTCTGATTTTTTCTTTTTCTTCTGTTGTTGCGAACGTTCTTTCTCATCAAAAATCGTAGTGATTGCAAACTTTYTTTTGCTTTATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19419</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>492629</contig_pos>
        <strand>+</strand>
        <context>GGGAACAGCG[A/G]AAAAAATAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTATTGAGAGAATTGCAATAGAAAACGCTTTGCAATCAGGGAACAGCG</left_flank>
        <right_flank>AAAAAATAAATATTCCAAATTGCTAAACAACGCGCGGGCGTCATGAGCGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTCCACGGTTTCTTTTGGAATTTCTGCATCCAAGATTTTGAGCGCATTCACAGACCAATAGCACATCCACGAGCGACTAGCGTCCAATGTCTCAAATTATTGCAAAAGTGAGAAAATGCGTTTCTTCAACTTACTGAGTAGCTTGGCGGGCAGTTCTTGAGGTATCTGAGCAAATAGGCAGTATGTCGCTGGCGCAGAACAGTCAACTGAGAGGCATCCTCGTCCCCAGTGGCTTCAAACGGTTCCAATACTAACGAATTGTAATTTTCGAATAGCATTGCTTCAATCCGTTTCTGAAATTATTCTGTTTGTAATTAAGGTTGAATTCGAAATTAGGTAAACCTGTTCTGTGCTTGAGAAAGTGAAATTCCCGTCGTCATTGCATTCGAACTTGTCATTGAATGAGCGGAATGGAACTGGAGTTGTCATTTTCGCTAAATTAGGTTTTATTTATTGAGAGAATTGCAATAGAAAACGCTTTGCAATCAGGGAACAGCGGAAAAAATAAATATTCCAAATTGCTAAACAACGCGCGGGCGTCATGAGCGGAGTGTCGTTGTTTCCGTCTGATTTTTTCTTTTTCTTCTGTTGTTGCGAACGTTCTTTCTCATCAAAAATCGTAGTGATTGCAAACTTTTTTTTGCTTTATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAACTCAATTTTTTTTCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAATGGTACATGATTTTTAAAGACTTTTCTCGTCGTATCTCATTTTTTTCTCATTGATTCTCATCAATTGCGATTCCAAAATTTAACGAATTTTAAGGTAATGTCGAAGTTCCCGGTGCCGTTGAGAACGATTGGTGGGCTCCGTCCATCGGCCACCGCCGCCATTTCAGCGGCCAATATCGGTTTCACACAATCGAGCCGCGCCTTGAA</canonical>
            <polymorphic>TGTCCACGGTTTCTTTTGGAATTTCTGCATCCAAGATTTTGAGCGCATTCACAGACCAATAGCACATCCACGAGCGACTAGCGTCCAATGTCTCAAATTATTGCAAAAGTGAGAAAATGCGTTTCTTCAACTTACTGAGTAGCTTGGCGGGCAGTTCTTGAGGTATCTGAGCAAATAGGCAGTATGTCGCTGGCGCAGAACAGTCAACTGAGAGGCATCCTCGTCCCCAGTGGCTTCAAACGGTTCCAATACTAACGAATTGTAATTTTCGAATAGCATTGCTTCAATCCGTTTCTGAAATTATTCTGTTTGTAATTAAGGTTGAATTCGAAATTAGGTAAACCTGTTCTGTGCTTGAGAAAGTGAAATTCCCGTCGTCATTGCATTCGAACTTGTCATTGAATGAGCGGAATGGAACTGGAGTTGTCATTTTCGCTAAATTAGGTTTTATTTATTGAGAGAATTGCAATAGAAAACGCTTTGCAATCAGGGAACAGCGRAAAAAATAAATATTCCAAATTGCTAAACAACGCGCGGGCGTCATGAGCGGAGTGTCGTTGTTTCCGTCTGATTTTTTCTTTTTCTTCTGTTGTTGCGAACGTTCTTTCTCATCAAAAATCGTAGTGATTGCAAACTTTTTTTTGCTTTATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAACTCAATTTTTTTTCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAATGGTACATGATTTTTAAAGACTTTTCTCGTCGTATCTCATTTTTTTCTCATTGATTCTCATCAATTGCGATTCCAAAATTTAACGAATTTTAAGGTAATGTCGAAGTTCCCGGTGCCGTTGAGAACGATTGGTGGGCTCCGTCCATCGGCCACCGCCGCCATTTCAGCGGCCAATATCGGTTTCACACAATCGAGCCGCGCCTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>497 463 40</canonical_bands>
                <polymorphic_bands>960 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTTTCGCTAAATTAGGTTTTA</pcr_primer_p1>
		<pcr_primer_p2>ACTGATTAGGCACACTATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATTTTCGCTAAATTAGGTTTTATTTATTGAGAGAATTGCAATAGAAAACGCTTTGCAATCAGGGAACAGCGGAAAAAATAAATATTCCAAATTGCTAAACAACGCGCGGGCGTCATGAGCGGAGTGTCGTTGTTTCCGTCTGATTTTTTCTTTTTCTTCTGTTGTTGCGAACGTTCTTTCTCATCAAAAATCGTAGTGATTGCAAACTTTTTTTTGCTTTATCAGTTTTGATAGTGTGCCTAATCAGT</canonical_amplicon>
		<polymorphic_amplicon>CATTTTCGCTAAATTAGGTTTTATTTATTGAGAGAATTGCAATAGAAAACGCTTTGCAATCAGGGAACAGCGRAAAAAATAAATATTCCAAATTGCTAAACAACGCGCGGGCGTCATGAGCGGAGTGTCGTTGTTTCCGTCTGATTTTTTCTTTTTCTTCTGTTGTTGCGAACGTTCTTTCTCATCAAAAATCGTAGTGATTGCAAACTTTTTTTTGCTTTATCAGTTTTGATAGTGTGCCTAATCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19420</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>492607</contig_pos>
        <strand>+</strand>
        <context>AATAGAAAAC[A/G]CTTTGCAATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTTTCGCTAAATTAGGTTTTATTTATTGAGAGAATTGCAATAGAAAAC</left_flank>
        <right_flank>CTTTGCAATCAGGGAACAGCGGAAAAAATAAATATTCCAAATTGCTAAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTTCAAAAATGTTATAATGTTGTCCACGGTTTCTTTTGGAATTTCTGCATCCAAGATTTTGAGCGCATTCACAGACCAATAGCACATCCACGAGCGACTAGCGTCCAATGTCTCAAATTATTGCAAAAGTGAGAAAATGCGTTTCTTCAACTTACTGAGTAGCTTGGCGGGCAGTTCTTGAGGTATCTGAGCAAATAGGCAGTATGTCGCTGGCGCAGAACAGTCAACTGAGAGGCATCCTCGTCCCCAGTGGCTTCAAACGGTTCCAATACTAACGAATTGTAATTTTCGAATAGCATTGCTTCAATCCGTTTCTGAAATTATTCTGTTTGTAATTAAGGTTGAATTCGAAATTAGGTAAACCTGTTCTGTGCTTGAGAAAGTGAAATTCCCGTCGTCATTGCATTCGAACTTGTCATTGAATGAGCGGAATGGAACTGGAGTTGTCATTTTCGCTAAATTAGGTTTTATTTATTGAGAGAATTGCAATAGAAAACGCTTTGCAATCAGGGAACAGCGGAAAAAATAAATATTCCAAATTGCTAAACAACGCGCGGGCGTCATGAGCGGAGTGTCGTTGTTTCCGTCTGATTTTTTCTTTTTCTTCTGTTGTTGCGAACGTTCTTTCTCATCAAAAATCGTAGTGATTGCAAACTTTTTTTTGCTTTATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAACTCAATTTTTTTTCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAATGGTACATGATTTTTAAAGACTTTTCTCGTCGTATCTCATTTTTTTCTCATTGATTCTCATCAATTGCGATTCCAAAATTTAACGAATTTTAAGGTAATGTCGAAGTTCCCGGTGCCGTTGAGAACGATTGGTGGGCTCCGTCCATCGGCCACCGCCGCCATTTCAGCGGCCAATATCGGTTTCA</canonical>
            <polymorphic>GCTTTCAAAAATGTTATAATGTTGTCCACGGTTTCTTTTGGAATTTCTGCATCCAAGATTTTGAGCGCATTCACAGACCAATAGCACATCCACGAGCGACTAGCGTCCAATGTCTCAAATTATTGCAAAAGTGAGAAAATGCGTTTCTTCAACTTACTGAGTAGCTTGGCGGGCAGTTCTTGAGGTATCTGAGCAAATAGGCAGTATGTCGCTGGCGCAGAACAGTCAACTGAGAGGCATCCTCGTCCCCAGTGGCTTCAAACGGTTCCAATACTAACGAATTGTAATTTTCGAATAGCATTGCTTCAATCCGTTTCTGAAATTATTCTGTTTGTAATTAAGGTTGAATTCGAAATTAGGTAAACCTGTTCTGTGCTTGAGAAAGTGAAATTCCCGTCGTCATTGCATTCGAACTTGTCATTGAATGAGCGGAATGGAACTGGAGTTGTCATTTTCGCTAAATTAGGTTTTATTTATTGAGAGAATTGCAATAGAAAACRCTTTGCAATCAGGGAACAGCGGAAAAAATAAATATTCCAAATTGCTAAACAACGCGCGGGCGTCATGAGCGGAGTGTCGTTGTTTCCGTCTGATTTTTTCTTTTTCTTCTGTTGTTGCGAACGTTCTTTCTCATCAAAAATCGTAGTGATTGCAAACTTTTTTTTGCTTTATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAACTCAATTTTTTTTCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAATGGTACATGATTTTTAAAGACTTTTCTCGTCGTATCTCATTTTTTTCTCATTGATTCTCATCAATTGCGATTCCAAAATTTAACGAATTTTAAGGTAATGTCGAAGTTCCCGGTGCCGTTGAGAACGATTGGTGGGCTCCGTCCATCGGCCACCGCCGCCATTTCAGCGGCCAATATCGGTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCATTTTCGCTAAATTAGGT</pcr_primer_p1>
		<pcr_primer_p2>TGATTAGGCACACTATCAAAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTCATTTTCGCTAAATTAGGTTTTATTTATTGAGAGAATTGCAATAGAAAACGCTTTGCAATCAGGGAACAGCGGAAAAAATAAATATTCCAAATTGCTAAACAACGCGCGGGCGTCATGAGCGGAGTGTCGTTGTTTCCGTCTGATTTTTTCTTTTTCTTCTGTTGTTGCGAACGTTCTTTCTCATCAAAAATCGTAGTGATTGCAAACTTTTTTTTGCTTTATCAGTTTTGATAGTGTGCCTAATCA</canonical_amplicon>
		<polymorphic_amplicon>TGTCATTTTCGCTAAATTAGGTTTTATTTATTGAGAGAATTGCAATAGAAAACRCTTTGCAATCAGGGAACAGCGGAAAAAATAAATATTCCAAATTGCTAAACAACGCGCGGGCGTCATGAGCGGAGTGTCGTTGTTTCCGTCTGATTTTTTCTTTTTCTTCTGTTGTTGCGAACGTTCTTTCTCATCAAAAATCGTAGTGATTGCAAACTTTTTTTTGCTTTATCAGTTTTGATAGTGTGCCTAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19421</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>492450</contig_pos>
        <strand>+</strand>
        <context>TGTAATTAAG[G/T]TTGAATTCGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAATAGCATTGCTTCAATCCGTTTCTGAAATTATTCTGTTTGTAATTAAG</left_flank>
        <right_flank>TTGAATTCGAAATTAGGTAAACCTGTTCTGTGCTTGAGAAAGTGAAATTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTTTTTTCAAAAAATTGTGTAGCGTTTCTCGGTTGATCGATTTGAGAGCTTCTTCTGTCTGAAGTGAAGCTAGGCACATGACTGTGGCGTATGTTGGAGCCAAATGAGCCAACTGGCCTGGTCCGCCACCATATCCACCGTCTGGGTGTTCACAGGCTTTCAAAAATGTTATAATGTTGTCCACGGTTTCTTTTGGAATTTCTGCATCCAAGATTTTGAGCGCATTCACAGACCAATAGCACATCCACGAGCGACTAGCGTCCAATGTCTCAAATTATTGCAAAAGTGAGAAAATGCGTTTCTTCAACTTACTGAGTAGCTTGGCGGGCAGTTCTTGAGGTATCTGAGCAAATAGGCAGTATGTCGCTGGCGCAGAACAGTCAACTGAGAGGCATCCTCGTCCCCAGTGGCTTCAAACGGTTCCAATACTAACGAATTGTAATTTTCGAATAGCATTGCTTCAATCCGTTTCTGAAATTATTCTGTTTGTAATTAAGGTTGAATTCGAAATTAGGTAAACCTGTTCTGTGCTTGAGAAAGTGAAATTCCCGTCGTCATTGCATTCGAACTTGTCATTGAATGAGCGGAATGGAACTGGAGTTGTCATTTTCGCTAAATTAGGTTTTATTTATTGAGAGAATTGCAATAGAAAACGCTTTGCAATCAGGGAACAGCGGAAAAAATAAATATTCCAAATTGCTAAACAACGCGCGGGCGTCATGAGCGGAGTGTCGTTGTTTCCGTCTGATTTTTTCTTTTTCTTCTGTTGTTGCGAACGTTCTTTCTCATCAAAAATCGTAGTGATTGCAAACTTTTTTTTGCTTTATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAACTCAATTTTTTTTCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAATGGTACATGATTTTTAAAGACTTTTCTC</canonical>
            <polymorphic>GCTTTTTTTCAAAAAATTGTGTAGCGTTTCTCGGTTGATCGATTTGAGAGCTTCTTCTGTCTGAAGTGAAGCTAGGCACATGACTGTGGCGTATGTTGGAGCCAAATGAGCCAACTGGCCTGGTCCGCCACCATATCCACCGTCTGGGTGTTCACAGGCTTTCAAAAATGTTATAATGTTGTCCACGGTTTCTTTTGGAATTTCTGCATCCAAGATTTTGAGCGCATTCACAGACCAATAGCACATCCACGAGCGACTAGCGTCCAATGTCTCAAATTATTGCAAAAGTGAGAAAATGCGTTTCTTCAACTTACTGAGTAGCTTGGCGGGCAGTTCTTGAGGTATCTGAGCAAATAGGCAGTATGTCGCTGGCGCAGAACAGTCAACTGAGAGGCATCCTCGTCCCCAGTGGCTTCAAACGGTTCCAATACTAACGAATTGTAATTTTCGAATAGCATTGCTTCAATCCGTTTCTGAAATTATTCTGTTTGTAATTAAGKTTGAATTCGAAATTAGGTAAACCTGTTCTGTGCTTGAGAAAGTGAAATTCCCGTCGTCATTGCATTCGAACTTGTCATTGAATGAGCGGAATGGAACTGGAGTTGTCATTTTCGCTAAATTAGGTTTTATTTATTGAGAGAATTGCAATAGAAAACGCTTTGCAATCAGGGAACAGCGGAAAAAATAAATATTCCAAATTGCTAAACAACGCGCGGGCGTCATGAGCGGAGTGTCGTTGTTTCCGTCTGATTTTTTCTTTTTCTTCTGTTGTTGCGAACGTTCTTTCTCATCAAAAATCGTAGTGATTGCAAACTTTTTTTTGCTTTATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAACTCAATTTTTTTTCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAATGGTACATGATTTTTAAAGACTTTTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCAAACGGTTCCAATACTA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTATTGCAATTCTCTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTTCAAACGGTTCCAATACTAACGAATTGTAATTTTCGAATAGCATTGCTTCAATCCGTTTCTGAAATTATTCTGTTTGTAATTAAGGTTGAATTCGAAATTAGGTAAACCTGTTCTGTGCTTGAGAAAGTGAAATTCCCGTCGTCATTGCATTCGAACTTGTCATTGAATGAGCGGAATGGAACTGGAGTTGTCATTTTCGCTAAATTAGGTTTTATTTATTGAGAGAATTGCAATAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>CTTCAAACGGTTCCAATACTAACGAATTGTAATTTTCGAATAGCATTGCTTCAATCCGTTTCTGAAATTATTCTGTTTGTAATTAAGKTTGAATTCGAAATTAGGTAAACCTGTTCTGTGCTTGAGAAAGTGAAATTCCCGTCGTCATTGCATTCGAACTTGTCATTGAATGAGCGGAATGGAACTGGAGTTGTCATTTTCGCTAAATTAGGTTTTATTTATTGAGAGAATTGCAATAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19422</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>519148</contig_pos>
        <strand>+</strand>
        <context>ACTCTTAAGT[C/T]GACAGATACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGACTGACTTCGAATCAGTCCGTCGTGCGGCTAAGGAGACTCTTAAGT</left_flank>
        <right_flank>GACAGATACAATTGATATTCTTGTGAACAACGCGGGGATCATGTTCCAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCGCAATTTTTTCTTACAAAAACTTCCTTATAAAGGCATATTTTTGATTTTCAGTTATCTAGAAAAACAAACGACATCTATAACCATGATGGACGTAGAGGTGGAGGAATCCAGCTGGTTCCTTCCCACAGTTCTCATCGCAGCTGTGAGCTTCATTGCTCTGTATTTCACAAGACGCTTCTTCAAAGGAGGTCAGTTCACTGAGCGAGTTTCGGCGAAAGGATTGGTCGCTGTGGTGACTGGAGCAAATTGTGGAATCGGTTATGAAACAGTTAGAGAGCTCAATTTGAAGAAAGCTGATGTAAGCTTCTTTTCTCTTTACCAAATTGAAAATTCTCATTTTCTAGATTTACATGTTGTGTCGCAGTGAAGAGAAGGCCAATGACGCTAAACGAGCTCTCGTTAGACAGGGATGCGATGCCACTCGTCTCCATTTCATTGAATGCGATTTGACTGACTTCGAATCAGTCCGTCGTGCGGCTAAGGAGACTCTTAAGTTGACAGATACAATTGATATTCTTGTGAACAACGCGGGGATCATGTTCCAAAGTAAGCATGAGTTAACAAAGGACGGACATGAGAAGACGTGGCAAAGCAATTATCTCGGACCATTCTTGCTCACTGAGCTCTTGCTCCCGGCAGTCAAAAAGTCTCAGTACGCGAGAATCGTCAATGTTTCGTCTTTGATGCACATGCGGTCCGGAAAAATAAATATTGCTACTGTCGATGATAAGAAGTCGTTTGGAATGATGAAGTCGTATAGCCAGAGCAAGTTGGCCAATGTAATGCATGCCAGAGCGCTGACGAAAGAGTTGAGAAAGGATGGAGCTGAACACGTAACTGCCAACTCTGTACACCCAGGAGGTGTGGATACTGAGCTCACTAGAACGACCATCCTTGCATGGCCAGTCATCAAACAAATTAGTGCTCCATTCAGGTAAAAATAACTTCTCAATTTCTAACGAAAATCTTTTTTTTCTAGATGGTTCTTCCTGAAAA</canonical>
            <polymorphic>AGCGCAATTTTTTCTTACAAAAACTTCCTTATAAAGGCATATTTTTGATTTTCAGTTATCTAGAAAAACAAACGACATCTATAACCATGATGGACGTAGAGGTGGAGGAATCCAGCTGGTTCCTTCCCACAGTTCTCATCGCAGCTGTGAGCTTCATTGCTCTGTATTTCACAAGACGCTTCTTCAAAGGAGGTCAGTTCACTGAGCGAGTTTCGGCGAAAGGATTGGTCGCTGTGGTGACTGGAGCAAATTGTGGAATCGGTTATGAAACAGTTAGAGAGCTCAATTTGAAGAAAGCTGATGTAAGCTTCTTTTCTCTTTACCAAATTGAAAATTCTCATTTTCTAGATTTACATGTTGTGTCGCAGTGAAGAGAAGGCCAATGACGCTAAACGAGCTCTCGTTAGACAGGGATGCGATGCCACTCGTCTCCATTTCATTGAATGCGATTTGACTGACTTCGAATCAGTCCGTCGTGCGGCTAAGGAGACTCTTAAGTYGACAGATACAATTGATATTCTTGTGAACAACGCGGGGATCATGTTCCAAAGTAAGCATGAGTTAACAAAGGACGGACATGAGAAGACGTGGCAAAGCAATTATCTCGGACCATTCTTGCTCACTGAGCTCTTGCTCCCGGCAGTCAAAAAGTCTCAGTACGCGAGAATCGTCAATGTTTCGTCTTTGATGCACATGCGGTCCGGAAAAATAAATATTGCTACTGTCGATGATAAGAAGTCGTTTGGAATGATGAAGTCGTATAGCCAGAGCAAGTTGGCCAATGTAATGCATGCCAGAGCGCTGACGAAAGAGTTGAGAAAGGATGGAGCTGAACACGTAACTGCCAACTCTGTACACCCAGGAGGTGTGGATACTGAGCTCACTAGAACGACCATCCTTGCATGGCCAGTCATCAAACAAATTAGTGCTCCATTCAGGTAAAAATAACTTCTCAATTTCTAACGAAAATCTTTTTTTTCTAGATGGTTCTTCCTGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>500 437 63</canonical_bands>
                <polymorphic_bands>563 437</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAAAATTCTCATTTTCTAGATTT</pcr_primer_p1>
		<pcr_primer_p2>GTCCTTTGTTAACTCATGCTTAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTGAAAATTCTCATTTTCTAGATTTACATGTTGTGTCGCAGTGAAGAGAAGGCCAATGACGCTAAACGAGCTCTCGTTAGACAGGGATGCGATGCCACTCGTCTCCATTTCATTGAATGCGATTTGACTGACTTCGAATCAGTCCGTCGTGCGGCTAAGGAGACTCTTAAGTTGACAGATACAATTGATATTCTTGTGAACAACGCGGGGATCATGTTCCAAAGTAAGCATGAGTTAACAAAGGAC</canonical_amplicon>
		<polymorphic_amplicon>TTGAAAATTCTCATTTTCTAGATTTACATGTTGTGTCGCAGTGAAGAGAAGGCCAATGACGCTAAACGAGCTCTCGTTAGACAGGGATGCGATGCCACTCGTCTCCATTTCATTGAATGCGATTTGACTGACTTCGAATCAGTCCGTCGTGCGGCTAAGGAGACTCTTAAGTYGACAGATACAATTGATATTCTTGTGAACAACGCGGGGATCATGTTCCAAAGTAAGCATGAGTTAACAAAGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19423</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>571290</contig_pos>
        <strand>+</strand>
        <context>CTCCTGAAAA[C/G]GACCCAGACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAGAAACAATGACGAATATTCGGGAAGAATGAAGAAGATCCTCCTGAAAA</left_flank>
        <right_flank>GACCCAGACAAAGTGCACTCAATGGATCTCAGATTACCTCTTCTCTTCGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAAGATGAGAGAAGGATAGAAGACGTTGAAGGTGTTGATGTTGTTGAAGAGGCAGAAGCCGGGAGGATCGGATACTGGTGTGGCTGTTGTTGTTGATAGCAGTCGAAATATGAAGAGGTGTCGATTAGGTGAGGGTCCGGCATGAAATAGGATGGAGGAGGGGGCAGTAGGTTACTCATAATCTCGGAAACGTTCCCGTGGGGCAAAGGGGCGGAGTCGGAGAAGGCAACAATATTGTGGTACTGTAGACACCTGTAGAGAGCCTAGAAAGGGGGATTAATTATAGGAGGCGTTAGAGAAGAATATGTGGGTGTAAATTGGAGAAGCTGCTCGTTTGAAATATGAATCCTTGTATGAAGCGACACAAGGGAGACAAGAGGATGGTCCAAATTAATTGGATGATGATTTCCGTTTGACTTTTTTCTCTTTTCGAAGGGTTTGTCGTAAAAGAAACAATGACGAATATTCGGGAAGAATGAAGAAGATCCTCCTGAAAACGACCCAGACAAAGTGCACTCAATGGATCTCAGATTACCTCTTCTCTTCGGACTTTTGCCTTTTCATTCAAAACATTTCGACTGCTGAATTTTTCAGCAGCACTGCTTGGGCTCTTTGTCAACGGATTGTGCATAGTTGCGATAGAGTCGGATTACGGTAGAGAGATGATTTTCTTGTTGAAACATTTTTTGGTTTTTTAGGATGGGGAAGTTTTAAAAATGCTCTAAAATTGGAGGAAAGTTTCAATTTCCGAAATCGTCTAGTTTTACAAATTTGATATTTTACAAACTTGATATTACCTCGGTTCTTTTAGACGATATCAAAAAATAATCTACATAAAATGTTTCTGATGTTATGATAAACACTGTATCAGTTGACCAAATTTTGAAATATCTTGAAGAAAATGATAATTGCGCTCAAAATGCACGTATAGGATGGGCTTCTATTAGTGCAATTACAGTAAGATAGAAAACAAATTTGAAAAAGTGTCATTTAAAAAT</canonical>
            <polymorphic>GAGAAGATGAGAGAAGGATAGAAGACGTTGAAGGTGTTGATGTTGTTGAAGAGGCAGAAGCCGGGAGGATCGGATACTGGTGTGGCTGTTGTTGTTGATAGCAGTCGAAATATGAAGAGGTGTCGATTAGGTGAGGGTCCGGCATGAAATAGGATGGAGGAGGGGGCAGTAGGTTACTCATAATCTCGGAAACGTTCCCGTGGGGCAAAGGGGCGGAGTCGGAGAAGGCAACAATATTGTGGTACTGTAGACACCTGTAGAGAGCCTAGAAAGGGGGATTAATTATAGGAGGCGTTAGAGAAGAATATGTGGGTGTAAATTGGAGAAGCTGCTCGTTTGAAATATGAATCCTTGTATGAAGCGACACAAGGGAGACAAGAGGATGGTCCAAATTAATTGGATGATGATTTCCGTTTGACTTTTTTCTCTTTTCGAAGGGTTTGTCGTAAAAGAAACAATGACGAATATTCGGGAAGAATGAAGAAGATCCTCCTGAAAASGACCCAGACAAAGTGCACTCAATGGATCTCAGATTACCTCTTCTCTTCGGACTTTTGCCTTTTCATTCAAAACATTTCGACTGCTGAATTTTTCAGCAGCACTGCTTGGGCTCTTTGTCAACGGATTGTGCATAGTTGCGATAGAGTCGGATTACGGTAGAGAGATGATTTTCTTGTTGAAACATTTTTTGGTTTTTTAGGATGGGGAAGTTTTAAAAATGCTCTAAAATTGGAGGAAAGTTTCAATTTCCGAAATCGTCTAGTTTTACAAATTTGATATTTTACAAACTTGATATTACCTCGGTTCTTTTAGACGATATCAAAAAATAATCTACATAAAATGTTTCTGATGTTATGATAAACACTGTATCAGTTGACCAAATTTTGAAATATCTTGAAGAAAATGATAATTGCGCTCAAAATGCACGTATAGGATGGGCTTCTATTAGTGCAATTACAGTAAGATAGAAAACAAATTTGAAAAAGTGTCATTTAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTGTCGTAAAAGAAACAATGA</pcr_primer_p1>
		<pcr_primer_p2>AAAATGTTTCAACAAGAAAATCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTGTCGTAAAAGAAACAATGACGAATATTCGGGAAGAATGAAGAAGATCCTCCTGAAAACGACCCAGACAAAGTGCACTCAATGGATCTCAGATTACCTCTTCTCTTCGGACTTTTGCCTTTTCATTCAAAACATTTCGACTGCTGAATTTTTCAGCAGCACTGCTTGGGCTCTTTGTCAACGGATTGTGCATAGTTGCGATAGAGTCGGATTACGGTAGAGAGATGATTTTCTTGTTGAAACATTTT</canonical_amplicon>
		<polymorphic_amplicon>GTTTGTCGTAAAAGAAACAATGACGAATATTCGGGAAGAATGAAGAAGATCCTCCTGAAAASGACCCAGACAAAGTGCACTCAATGGATCTCAGATTACCTCTTCTCTTCGGACTTTTGCCTTTTCATTCAAAACATTTCGACTGCTGAATTTTTCAGCAGCACTGCTTGGGCTCTTTGTCAACGGATTGTGCATAGTTGCGATAGAGTCGGATTACGGTAGAGAGATGATTTTCTTGTTGAAACATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19424</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>571547</contig_pos>
        <strand>+</strand>
        <context>TTTCCGAAAT[C/T]GTCTAGTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAGTTTTAAAAATGCTCTAAAATTGGAGGAAAGTTTCAATTTCCGAAAT</left_flank>
        <right_flank>GTCTAGTTTTACAAATTTGATATTTTACAAACTTGATATTACCTCGGTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAGAGCCTAGAAAGGGGGATTAATTATAGGAGGCGTTAGAGAAGAATATGTGGGTGTAAATTGGAGAAGCTGCTCGTTTGAAATATGAATCCTTGTATGAAGCGACACAAGGGAGACAAGAGGATGGTCCAAATTAATTGGATGATGATTTCCGTTTGACTTTTTTCTCTTTTCGAAGGGTTTGTCGTAAAAGAAACAATGACGAATATTCGGGAAGAATGAAGAAGATCCTCCTGAAAACGACCCAGACAAAGTGCACTCAATGGATCTCAGATTACCTCTTCTCTTCGGACTTTTGCCTTTTCATTCAAAACATTTCGACTGCTGAATTTTTCAGCAGCACTGCTTGGGCTCTTTGTCAACGGATTGTGCATAGTTGCGATAGAGTCGGATTACGGTAGAGAGATGATTTTCTTGTTGAAACATTTTTTGGTTTTTTAGGATGGGGAAGTTTTAAAAATGCTCTAAAATTGGAGGAAAGTTTCAATTTCCGAAATCGTCTAGTTTTACAAATTTGATATTTTACAAACTTGATATTACCTCGGTTCTTTTAGACGATATCAAAAAATAATCTACATAAAATGTTTCTGATGTTATGATAAACACTGTATCAGTTGACCAAATTTTGAAATATCTTGAAGAAAATGATAATTGCGCTCAAAATGCACGTATAGGATGGGCTTCTATTAGTGCAATTACAGTAAGATAGAAAACAAATTTGAAAAAGTGTCATTTAAAAATCGGCTCTGAAAATAAATTCTGAAACTTCCGTACATTTCAAAACTTTTCATTTCCTTTTCTGCGCTCTTCTGCCAATTTTCCATTTTTAATCCACAAAAAATACTGTGAAAAATGAAACCTCATCCTTAATACAATTAACTCTTACCGTGTGCCACAATTGATGATAATCATGTTCTCTGGTTTCCGCCCATCTGCTGTCATTCATTTTTTCCAACAATTGATTCGTTACACAAGTGATTCTATTCTATCGTTTTTTT</canonical>
            <polymorphic>TAGAGAGCCTAGAAAGGGGGATTAATTATAGGAGGCGTTAGAGAAGAATATGTGGGTGTAAATTGGAGAAGCTGCTCGTTTGAAATATGAATCCTTGTATGAAGCGACACAAGGGAGACAAGAGGATGGTCCAAATTAATTGGATGATGATTTCCGTTTGACTTTTTTCTCTTTTCGAAGGGTTTGTCGTAAAAGAAACAATGACGAATATTCGGGAAGAATGAAGAAGATCCTCCTGAAAACGACCCAGACAAAGTGCACTCAATGGATCTCAGATTACCTCTTCTCTTCGGACTTTTGCCTTTTCATTCAAAACATTTCGACTGCTGAATTTTTCAGCAGCACTGCTTGGGCTCTTTGTCAACGGATTGTGCATAGTTGCGATAGAGTCGGATTACGGTAGAGAGATGATTTTCTTGTTGAAACATTTTTTGGTTTTTTAGGATGGGGAAGTTTTAAAAATGCTCTAAAATTGGAGGAAAGTTTCAATTTCCGAAATYGTCTAGTTTTACAAATTTGATATTTTACAAACTTGATATTACCTCGGTTCTTTTAGACGATATCAAAAAATAATCTACATAAAATGTTTCTGATGTTATGATAAACACTGTATCAGTTGACCAAATTTTGAAATATCTTGAAGAAAATGATAATTGCGCTCAAAATGCACGTATAGGATGGGCTTCTATTAGTGCAATTACAGTAAGATAGAAAACAAATTTGAAAAAGTGTCATTTAAAAATCGGCTCTGAAAATAAATTCTGAAACTTCCGTACATTTCAAAACTTTTCATTTCCTTTTCTGCGCTCTTCTGCCAATTTTCCATTTTTAATCCACAAAAAATACTGTGAAAAATGAAACCTCATCCTTAATACAATTAACTCTTACCGTGTGCCACAATTGATGATAATCATGTTCTCTGGTTTCCGCCCATCTGCTGTCATTCATTTTTTCCAACAATTGATTCGTTACACAAGTGATTCTATTCTATCGTTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTAGGATGGGGAAGTTTTA</pcr_primer_p1>
		<pcr_primer_p2>TTATTTTCAGAGCCGATTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>TTTTAGGATGGGGAAGTTTTAAAAATGCTCTAAAATTGGAGGAAAGTTTCAATTTCCGAAATCGTCTAGTTTTACAAATTTGATATTTTACAAACTTGATATTACCTCGGTTCTTTTAGACGATATCAAAAAATAATCTACATAAAATGTTTCTGATGTTATGATAAACACTGTATCAGTTGACCAAATTTTGAAATATCTTGAAGAAAATGATAATTGCGCTCAAAATGCACGTATAGGATGGGCTTCTATTAGTGCAATTACAGTAAGATAGAAAACAAATTTGAAAAAGTGTCATTTAAAAATCGGCTCTGAAAATAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTAGGATGGGGAAGTTTTAAAAATGCTCTAAAATTGGAGGAAAGTTTCAATTTCCGAAATYGTCTAGTTTTACAAATTTGATATTTTACAAACTTGATATTACCTCGGTTCTTTTAGACGATATCAAAAAATAATCTACATAAAATGTTTCTGATGTTATGATAAACACTGTATCAGTTGACCAAATTTTGAAATATCTTGAAGAAAATGATAATTGCGCTCAAAATGCACGTATAGGATGGGCTTCTATTAGTGCAATTACAGTAAGATAGAAAACAAATTTGAAAAAGTGTCATTTAAAAATCGGCTCTGAAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19426</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>571779</contig_pos>
        <strand>+</strand>
        <context>TGAAAAAGTG[A/T]CATTTAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTTCTATTAGTGCAATTACAGTAAGATAGAAAACAAATTTGAAAAAGTG</left_flank>
        <right_flank>CATTTAAAAATCGGCTCTGAAAATAAATTCTGAAACTTCCGTACATTTCA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCTGAAAACGACCCAGACAAAGTGCACTCAATGGATCTCAGATTACCTCTTCTCTTCGGACTTTTGCCTTTTCATTCAAAACATTTCGACTGCTGAATTTTTCAGCAGCACTGCTTGGGCTCTTTGTCAACGGATTGTGCATAGTTGCGATAGAGTCGGATTACGGTAGAGAGATGATTTTCTTGTTGAAACATTTTTTGGTTTTTTAGGATGGGGAAGTTTTAAAAATGCTCTAAAATTGGAGGAAAGTTTCAATTTCCGAAATCGTCTAGTTTTACAAATTTGATATTTTACAAACTTGATATTACCTCGGTTCTTTTAGACGATATCAAAAAATAATCTACATAAAATGTTTCTGATGTTATGATAAACACTGTATCAGTTGACCAAATTTTGAAATATCTTGAAGAAAATGATAATTGCGCTCAAAATGCACGTATAGGATGGGCTTCTATTAGTGCAATTACAGTAAGATAGAAAACAAATTTGAAAAAGTGTCATTTAAAAATCGGCTCTGAAAATAAATTCTGAAACTTCCGTACATTTCAAAACTTTTCATTTCCTTTTCTGCGCTCTTCTGCCAATTTTCCATTTTTAATCCACAAAAAATACTGTGAAAAATGAAACCTCATCCTTAATACAATTAACTCTTACCGTGTGCCACAATTGATGATAATCATGTTCTCTGGTTTCCGCCCATCTGCTGTCATTCATTTTTTCCAACAATTGATTCGTTACACAAGTGATTCTATTCTATCGTTTTTTTTCTTCTGGGGATGTCGGTGCGAAAAATTGGGTTCTCTGACGAGGTGTACGGTAAGTTAAGTTATTTTGAAATTGCTACTTAACTCCTCCAAAAAATGTAGGTATTTTATATCCGGCTCAATTCTGCTGTCTACGCAACATGCACTACTTGACACCCTGAGTACCGTAAACTATACCCTAAACCCACACAATGAGTCATATGTGTCAAATCTAGTACCCCTATATGGTGCCAC</canonical>
            <polymorphic>CTCCTGAAAACGACCCAGACAAAGTGCACTCAATGGATCTCAGATTACCTCTTCTCTTCGGACTTTTGCCTTTTCATTCAAAACATTTCGACTGCTGAATTTTTCAGCAGCACTGCTTGGGCTCTTTGTCAACGGATTGTGCATAGTTGCGATAGAGTCGGATTACGGTAGAGAGATGATTTTCTTGTTGAAACATTTTTTGGTTTTTTAGGATGGGGAAGTTTTAAAAATGCTCTAAAATTGGAGGAAAGTTTCAATTTCCGAAATCGTCTAGTTTTACAAATTTGATATTTTACAAACTTGATATTACCTCGGTTCTTTTAGACGATATCAAAAAATAATCTACATAAAATGTTTCTGATGTTATGATAAACACTGTATCAGTTGACCAAATTTTGAAATATCTTGAAGAAAATGATAATTGCGCTCAAAATGCACGTATAGGATGGGCTTCTATTAGTGCAATTACAGTAAGATAGAAAACAAATTTGAAAAAGTGWCATTTAAAAATCGGCTCTGAAAATAAATTCTGAAACTTCCGTACATTTCAAAACTTTTCATTTCCTTTTCTGCGCTCTTCTGCCAATTTTCCATTTTTAATCCACAAAAAATACTGTGAAAAATGAAACCTCATCCTTAATACAATTAACTCTTACCGTGTGCCACAATTGATGATAATCATGTTCTCTGGTTTCCGCCCATCTGCTGTCATTCATTTTTTCCAACAATTGATTCGTTACACAAGTGATTCTATTCTATCGTTTTTTTTCTTCTGGGGATGTCGGTGCGAAAAATTGGGTTCTCTGACGAGGTGTACGGTAAGTTAAGTTATTTTGAAATTGCTACTTAACTCCTCCAAAAAATGTAGGTATTTTATATCCGGCTCAATTCTGCTGTCTACGCAACATGCACTACTTGACACCCTGAGTACCGTAAACTATACCCTAAACCCACACAATGAGTCATATGTGTCAAATCTAGTACCCCTATATGGTGCCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAATTGGAGGAAAGTTTCAAT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTTGAAATGTACGGAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>TAAAATTGGAGGAAAGTTTCAATTTCCGAAATCGTCTAGTTTTACAAATTTGATATTTTACAAACTTGATATTACCTCGGTTCTTTTAGACGATATCAAAAAATAATCTACATAAAATGTTTCTGATGTTATGATAAACACTGTATCAGTTGACCAAATTTTGAAATATCTTGAAGAAAATGATAATTGCGCTCAAAATGCACGTATAGGATGGGCTTCTATTAGTGCAATTACAGTAAGATAGAAAACAAATTTGAAAAAGTGTCATTTAAAAATCGGCTCTGAAAATAAATTCTGAAACTTCCGTACATTTCAAAACTT</canonical_amplicon>
		<polymorphic_amplicon>TAAAATTGGAGGAAAGTTTCAATTTCCGAAATCGTCTAGTTTTACAAATTTGATATTTTACAAACTTGATATTACCTCGGTTCTTTTAGACGATATCAAAAAATAATCTACATAAAATGTTTCTGATGTTATGATAAACACTGTATCAGTTGACCAAATTTTGAAATATCTTGAAGAAAATGATAATTGCGCTCAAAATGCACGTATAGGATGGGCTTCTATTAGTGCAATTACAGTAAGATAGAAAACAAATTTGAAAAAGTGWCATTTAAAAATCGGCTCTGAAAATAAATTCTGAAACTTCCGTACATTTCAAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19427</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>574251</contig_pos>
        <strand>+</strand>
        <context>ATTTGTTTCT[C/G]AATGAACTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACAGATTAGCACCGGAAAAATGTCTACACATGTCTAGAGGATTTGTTTCT</left_flank>
        <right_flank>AATGAACTTTTCAGAGATTAAACTCAGTCTGAAACTCGCGAAATCAAAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGTACGCTTTGAATGAAATATTGGAAATGTGTTGGAAATTGAAAGACAGATAATGGTTTTTTTTTAATTCTTGACGAAATGGATGGATGGATGAGTTGGGAAACTGGTCTTGGTTTCAGCTCAACTATCTCGGTTCATTCGGAAGGTATCAAAAAGTGGTCAACTAATAAATTATTAATCATGATATCACAAACATTTTATTAGTTAAAATTTTTTGATACCTCTTACAGGAACCGAGACAAATGAGCTCCCTTGTATTACTGGTTTAACATTTCTTATTTCTTGTGGTTCCTGAAATGAAGGCATTTTTAGATTTATACTCTTTCTTCAAATATTTTTCTAGAACTTTCCAGATCCTGACCCCCTCTTCCGTCTCAAAATCCAAACGCAACTCTGTGCGCAAAACACGAATAATCCCTTTTTTATCTCTCTGCTATTATCAGCAGCACAGATTAGCACCGGAAAAATGTCTACACATGTCTAGAGGATTTGTTTCTGAATGAACTTTTCAGAGATTAAACTCAGTCTGAAACTCGCGAAATCAAAAGTTTTAAGTGATAGTGGCTGAAAACACTTTTTACAGGAGGAAATTGAGTCACAAAAAAGAGAGGACTTCCGGTTTGAAATCGAAACCTGTCAGTTTTGATAATGTCAATCTGATAGGTTGATAATTGATACAGAGACATTTGGGTTTTATGGGTTGAAAGTTTGAAAAAGAAAATTGGGAAGGCAGAAATTGTGAAATTTGTATTTTGTAAAATTGTTATAGCACCGTACTTCCTTGAATAGAAGCACAAACAAACTGTCAACTTTGAGCTCAATTATCTCAATTCCTATGAAAGGTATCAAAAAGTTGTCGACTGGCAAATTATTTATCATTATATCACCAATATTTTATAAGTTAGCACAATTTTTATACCTTTTACAGAAGTCAAGATAATTGAGCTCAAAGTTGACAGACTGGGCAGGTTTTTATTAGAATAAATAGGCTGGACCAA</canonical>
            <polymorphic>AATGTACGCTTTGAATGAAATATTGGAAATGTGTTGGAAATTGAAAGACAGATAATGGTTTTTTTTTAATTCTTGACGAAATGGATGGATGGATGAGTTGGGAAACTGGTCTTGGTTTCAGCTCAACTATCTCGGTTCATTCGGAAGGTATCAAAAAGTGGTCAACTAATAAATTATTAATCATGATATCACAAACATTTTATTAGTTAAAATTTTTTGATACCTCTTACAGGAACCGAGACAAATGAGCTCCCTTGTATTACTGGTTTAACATTTCTTATTTCTTGTGGTTCCTGAAATGAAGGCATTTTTAGATTTATACTCTTTCTTCAAATATTTTTCTAGAACTTTCCAGATCCTGACCCCCTCTTCCGTCTCAAAATCCAAACGCAACTCTGTGCGCAAAACACGAATAATCCCTTTTTTATCTCTCTGCTATTATCAGCAGCACAGATTAGCACCGGAAAAATGTCTACACATGTCTAGAGGATTTGTTTCTSAATGAACTTTTCAGAGATTAAACTCAGTCTGAAACTCGCGAAATCAAAAGTTTTAAGTGATAGTGGCTGAAAACACTTTTTACAGGAGGAAATTGAGTCACAAAAAAGAGAGGACTTCCGGTTTGAAATCGAAACCTGTCAGTTTTGATAATGTCAATCTGATAGGTTGATAATTGATACAGAGACATTTGGGTTTTATGGGTTGAAAGTTTGAAAAAGAAAATTGGGAAGGCAGAAATTGTGAAATTTGTATTTTGTAAAATTGTTATAGCACCGTACTTCCTTGAATAGAAGCACAAACAAACTGTCAACTTTGAGCTCAATTATCTCAATTCCTATGAAAGGTATCAAAAAGTTGTCGACTGGCAAATTATTTATCATTATATCACCAATATTTTATAAGTTAGCACAATTTTTATACCTTTTACAGAAGTCAAGATAATTGAGCTCAAAGTTGACAGACTGGGCAGGTTTTTATTAGAATAAATAGGCTGGACCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>356 340 143 130 17 14</canonical_bands>
                <polymorphic_bands>370 340 143 130 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTAGAACTTTCCAGATCCT</pcr_primer_p1>
		<pcr_primer_p2>GTAAAAAGTGTTTTCAGCCACTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTAGAACTTTCCAGATCCTGACCCCCTCTTCCGTCTCAAAATCCAAACGCAACTCTGTGCGCAAAACACGAATAATCCCTTTTTTATCTCTCTGCTATTATCAGCAGCACAGATTAGCACCGGAAAAATGTCTACACATGTCTAGAGGATTTGTTTCTGAATGAACTTTTCAGAGATTAAACTCAGTCTGAAACTCGCGAAATCAAAAGTTTTAAGTGATAGTGGCTGAAAACACTTTTTAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTAGAACTTTCCAGATCCTGACCCCCTCTTCCGTCTCAAAATCCAAACGCAACTCTGTGCGCAAAACACGAATAATCCCTTTTTTATCTCTCTGCTATTATCAGCAGCACAGATTAGCACCGGAAAAATGTCTACACATGTCTAGAGGATTTGTTTCTSAATGAACTTTTCAGAGATTAAACTCAGTCTGAAACTCGCGAAATCAAAAGTTTTAAGTGATAGTGGCTGAAAACACTTTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19428</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>594158</contig_pos>
        <strand></strand>
        <context>CAATTTTCAA[A/G]WTGAAAAAYT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAA</left_flank>
        <right_flank>ATGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCAGCCAGAAAATATGTCCACGACGGTGCGGTTTCAGTAGCTGTTGGACAGTAGAATGAGAGGACCAACACCGTTGTTAAATTCACAATGAGTCCTGAAACATACAAGTTACAATTTAAATTTTTTTCAAAAAAAAAAACAAAATACCGATTAGGGTCAAAAGGTTGGGTGCTACCCAGAGTGGGTAATAGATGACGACGGCCTCCCAGAACTTCTTCATACAGAGCTCATCGAGCCAGGAGGTGTCGACTGCTGAATAGACGTGCTCATCGAGTCGTTGCAGTTCTTCTCGTGTCAAAAGGCAATCGTATTGCAGGTAATGATCGATGGTTTTGCATCCGACGAGAGCGTCGGATTCTTCGAATGTTGATCGAGGACGATATGCATACCTCTCTTTGGAACGATCCTTGTCGGTGGCTCGATTATTTTTCGACCTCGATCGAGTGGTCACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAATGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTGATCAAAAAATTGGAAAATTTTTTGCAAAATCAATGTGTTTCAGAGATTAATTTAATGACACAAAAAAACAAGTTCGCACATGTGAAATTTGGACTTTGTCCGAGAGGAGTACACGAGGTGTGCGATGGAGCGCGTCTGCAAATACCACGAAGAAAATTGAGACCCCGCAAATTCCGGGGAAAAAATCGGGAAAAGTGGGCGGAGTCGGGGGGGGGGGGGGGATTTTTGATGCGTTTTTTTGGGAACAGGTTTTGGATTTTGGGGGGGTGGTGATTTTTCTAAAGTTCAAAAATTCGAAGATTTCGAATTTGAAATGTTCAGAAACTCAGAAATTCAGAAAGATAAATCTGCCAAAACTCAAAAATTTAAAA</canonical>
            <polymorphic>GGCAGCCAGAAAATATGTCCACGACGGTGCGGTTTCAGTAGCTGTTGGACAGTAGAATGAGAGGACCAACACCGTTGTTAAATTCACAATGAGTCCTGAAACATACAAGTTACAATTTAAATTTTTTTCAAAAAAAAAAACAAAATACCGATTAGGGTCAAAAGGTTGGGTGCTACCCAGAGTGGGTAATAGATGACGACGGCCTCCCAGAACTTCTTCATACAGAGCTCATCGAGCCAGGAGGTGTCGACTGCTGAATAGACGTGCTCATCGAGTCGTTGCAGTTCTTCTCGTGTCAAAAGGCAATCGTATTGCAGGTAATGATCGATGGTTTTGCATCCGACGAGAGCGTCGGATTCTTCGAATGTTGATCGAGGACGATATGCATACCTCTCTTTGGAACGATCCTTGTCGGTGGCTCGATTATTTTTCGACCTCGATCGAGTGGTCACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAARATGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTGATCAAAAAATTGGAAAATTTTTTGCAAAATCAATGTGTTTCAGAGATTAATTTAATGACACAAAAAAACAAGTTCGCACATGTGAAATTTGGACTTTGTCCGAGAGGAGTACACGAGGTGTGCGATGGAGCGCGTCTGCAAATACCACGAAGAAAATTGAGACCCCGCAAATTCCGGGGAAAAAATCGGGAAAAGTGGGCGGAGTCGGGGGGGGGGGGGGGATTTTTGATGCGTTTTTTTGGGAACAGGTTTTGGATTTTGGGGGGGTGGTGATTTTTCTAAAGTTCAAAAATTCGAAGATTTCGAATTTGAAATGTTCAGAAACTCAGAAATTCAGAAAGATAAATCTGCCAAAACTCAAAAATTTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGCATACCTCTCTTTGGAAC</pcr_primer_p1>
		<pcr_primer_p2>CAAATAAACATTGAACAGTTGTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TATGCATACCTCTCTTTGGAACGATCCTTGTCGGTGGCTCGATTATTTTTCGACCTCGATCGAGTGGTCACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAATGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTG</canonical_amplicon>
		<polymorphic_amplicon>TATGCATACCTCTCTTTGGAACGATCCTTGTCGGTGGCTCGATTATTTTTCGACCTCGATCGAGTGGTCACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAARATGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19429</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>594159</contig_pos>
        <strand></strand>
        <context>AATTTTCAAR[A/T]TGAAAAAYTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAAA</left_flank>
        <right_flank>TGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAGCCAGAAAATATGTCCACGACGGTGCGGTTTCAGTAGCTGTTGGACAGTAGAATGAGAGGACCAACACCGTTGTTAAATTCACAATGAGTCCTGAAACATACAAGTTACAATTTAAATTTTTTTCAAAAAAAAAAACAAAATACCGATTAGGGTCAAAAGGTTGGGTGCTACCCAGAGTGGGTAATAGATGACGACGGCCTCCCAGAACTTCTTCATACAGAGCTCATCGAGCCAGGAGGTGTCGACTGCTGAATAGACGTGCTCATCGAGTCGTTGCAGTTCTTCTCGTGTCAAAAGGCAATCGTATTGCAGGTAATGATCGATGGTTTTGCATCCGACGAGAGCGTCGGATTCTTCGAATGTTGATCGAGGACGATATGCATACCTCTCTTTGGAACGATCCTTGTCGGTGGCTCGATTATTTTTCGACCTCGATCGAGTGGTCACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAATGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTGATCAAAAAATTGGAAAATTTTTTGCAAAATCAATGTGTTTCAGAGATTAATTTAATGACACAAAAAAACAAGTTCGCACATGTGAAATTTGGACTTTGTCCGAGAGGAGTACACGAGGTGTGCGATGGAGCGCGTCTGCAAATACCACGAAGAAAATTGAGACCCCGCAAATTCCGGGGAAAAAATCGGGAAAAGTGGGCGGAGTCGGGGGGGGGGGGGGGATTTTTGATGCGTTTTTTTGGGAACAGGTTTTGGATTTTGGGGGGGTGGTGATTTTTCTAAAGTTCAAAAATTCGAAGATTTCGAATTTGAAATGTTCAGAAACTCAGAAATTCAGAAAGATAAATCTGCCAAAACTCAAAAATTTAAAAA</canonical>
            <polymorphic>GCAGCCAGAAAATATGTCCACGACGGTGCGGTTTCAGTAGCTGTTGGACAGTAGAATGAGAGGACCAACACCGTTGTTAAATTCACAATGAGTCCTGAAACATACAAGTTACAATTTAAATTTTTTTCAAAAAAAAAAACAAAATACCGATTAGGGTCAAAAGGTTGGGTGCTACCCAGAGTGGGTAATAGATGACGACGGCCTCCCAGAACTTCTTCATACAGAGCTCATCGAGCCAGGAGGTGTCGACTGCTGAATAGACGTGCTCATCGAGTCGTTGCAGTTCTTCTCGTGTCAAAAGGCAATCGTATTGCAGGTAATGATCGATGGTTTTGCATCCGACGAGAGCGTCGGATTCTTCGAATGTTGATCGAGGACGATATGCATACCTCTCTTTGGAACGATCCTTGTCGGTGGCTCGATTATTTTTCGACCTCGATCGAGTGGTCACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAWTGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTGATCAAAAAATTGGAAAATTTTTTGCAAAATCAATGTGTTTCAGAGATTAATTTAATGACACAAAAAAACAAGTTCGCACATGTGAAATTTGGACTTTGTCCGAGAGGAGTACACGAGGTGTGCGATGGAGCGCGTCTGCAAATACCACGAAGAAAATTGAGACCCCGCAAATTCCGGGGAAAAAATCGGGAAAAGTGGGCGGAGTCGGGGGGGGGGGGGGGATTTTTGATGCGTTTTTTTGGGAACAGGTTTTGGATTTTGGGGGGGTGGTGATTTTTCTAAAGTTCAAAAATTCGAAGATTTCGAATTTGAAATGTTCAGAAACTCAGAAATTCAGAAAGATAAATCTGCCAAAACTCAAAAATTTAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGCATACCTCTCTTTGGAAC</pcr_primer_p1>
		<pcr_primer_p2>CAAATAAACATTGAACAGTTGTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TATGCATACCTCTCTTTGGAACGATCCTTGTCGGTGGCTCGATTATTTTTCGACCTCGATCGAGTGGTCACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAATGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTG</canonical_amplicon>
		<polymorphic_amplicon>TATGCATACCTCTCTTTGGAACGATCCTTGTCGGTGGCTCGATTATTTTTCGACCTCGATCGAGTGGTCACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAWTGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19430</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>594167</contig_pos>
        <strand></strand>
        <context>ARWTGAAAAA[C/T]TAATTGAAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAATGAAAAA</left_flank>
        <right_flank>TAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCACTTTCACC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATATGTCCACGACGGTGCGGTTTCAGTAGCTGTTGGACAGTAGAATGAGAGGACCAACACCGTTGTTAAATTCACAATGAGTCCTGAAACATACAAGTTACAATTTAAATTTTTTTCAAAAAAAAAAACAAAATACCGATTAGGGTCAAAAGGTTGGGTGCTACCCAGAGTGGGTAATAGATGACGACGGCCTCCCAGAACTTCTTCATACAGAGCTCATCGAGCCAGGAGGTGTCGACTGCTGAATAGACGTGCTCATCGAGTCGTTGCAGTTCTTCTCGTGTCAAAAGGCAATCGTATTGCAGGTAATGATCGATGGTTTTGCATCCGACGAGAGCGTCGGATTCTTCGAATGTTGATCGAGGACGATATGCATACCTCTCTTTGGAACGATCCTTGTCGGTGGCTCGATTATTTTTCGACCTCGATCGAGTGGTCACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAATGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTGATCAAAAAATTGGAAAATTTTTTGCAAAATCAATGTGTTTCAGAGATTAATTTAATGACACAAAAAAACAAGTTCGCACATGTGAAATTTGGACTTTGTCCGAGAGGAGTACACGAGGTGTGCGATGGAGCGCGTCTGCAAATACCACGAAGAAAATTGAGACCCCGCAAATTCCGGGGAAAAAATCGGGAAAAGTGGGCGGAGTCGGGGGGGGGGGGGGGATTTTTGATGCGTTTTTTTGGGAACAGGTTTTGGATTTTGGGGGGGTGGTGATTTTTCTAAAGTTCAAAAATTCGAAGATTTCGAATTTGAAATGTTCAGAAACTCAGAAATTCAGAAAGATAAATCTGCCAAAACTCAAAAATTTAAAAATTCCATAG</canonical>
            <polymorphic>AAAATATGTCCACGACGGTGCGGTTTCAGTAGCTGTTGGACAGTAGAATGAGAGGACCAACACCGTTGTTAAATTCACAATGAGTCCTGAAACATACAAGTTACAATTTAAATTTTTTTCAAAAAAAAAAACAAAATACCGATTAGGGTCAAAAGGTTGGGTGCTACCCAGAGTGGGTAATAGATGACGACGGCCTCCCAGAACTTCTTCATACAGAGCTCATCGAGCCAGGAGGTGTCGACTGCTGAATAGACGTGCTCATCGAGTCGTTGCAGTTCTTCTCGTGTCAAAAGGCAATCGTATTGCAGGTAATGATCGATGGTTTTGCATCCGACGAGAGCGTCGGATTCTTCGAATGTTGATCGAGGACGATATGCATACCTCTCTTTGGAACGATCCTTGTCGGTGGCTCGATTATTTTTCGACCTCGATCGAGTGGTCACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAATGAAAAAYTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTGATCAAAAAATTGGAAAATTTTTTGCAAAATCAATGTGTTTCAGAGATTAATTTAATGACACAAAAAAACAAGTTCGCACATGTGAAATTTGGACTTTGTCCGAGAGGAGTACACGAGGTGTGCGATGGAGCGCGTCTGCAAATACCACGAAGAAAATTGAGACCCCGCAAATTCCGGGGAAAAAATCGGGAAAAGTGGGCGGAGTCGGGGGGGGGGGGGGGATTTTTGATGCGTTTTTTTGGGAACAGGTTTTGGATTTTGGGGGGGTGGTGATTTTTCTAAAGTTCAAAAATTCGAAGATTTCGAATTTGAAATGTTCAGAAACTCAGAAATTCAGAAAGATAAATCTGCCAAAACTCAAAAATTTAAAAATTCCATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGCATACCTCTCTTTGGAAC</pcr_primer_p1>
		<pcr_primer_p2>CAAATAAACATTGAACAGTTGTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TATGCATACCTCTCTTTGGAACGATCCTTGTCGGTGGCTCGATTATTTTTCGACCTCGATCGAGTGGTCACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAATGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTG</canonical_amplicon>
		<polymorphic_amplicon>TATGCATACCTCTCTTTGGAACGATCCTTGTCGGTGGCTCGATTATTTTTCGACCTCGATCGAGTGGTCACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAATGAAAAAYTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19431</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>594190</contig_pos>
        <strand></strand>
        <context>CTGATAAACG[G/T]GAAAGTCAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTGTATCAATTTTCAAAATGAAAAACTAATTGAAACGACTGATAAACG</left_flank>
        <right_flank>GAAAGTCAAGAACCTGTCACTTTCACCGAATTTCTAGTTTTTATGATACA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAGTAGCTGTTGGACAGTAGAATGAGAGGACCAACACCGTTGTTAAATTCACAATGAGTCCTGAAACATACAAGTTACAATTTAAATTTTTTTCAAAAAAAAAAACAAAATACCGATTAGGGTCAAAAGGTTGGGTGCTACCCAGAGTGGGTAATAGATGACGACGGCCTCCCAGAACTTCTTCATACAGAGCTCATCGAGCCAGGAGGTGTCGACTGCTGAATAGACGTGCTCATCGAGTCGTTGCAGTTCTTCTCGTGTCAAAAGGCAATCGTATTGCAGGTAATGATCGATGGTTTTGCATCCGACGAGAGCGTCGGATTCTTCGAATGTTGATCGAGGACGATATGCATACCTCTCTTTGGAACGATCCTTGTCGGTGGCTCGATTATTTTTCGACCTCGATCGAGTGGTCACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAATGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTGATCAAAAAATTGGAAAATTTTTTGCAAAATCAATGTGTTTCAGAGATTAATTTAATGACACAAAAAAACAAGTTCGCACATGTGAAATTTGGACTTTGTCCGAGAGGAGTACACGAGGTGTGCGATGGAGCGCGTCTGCAAATACCACGAAGAAAATTGAGACCCCGCAAATTCCGGGGAAAAAATCGGGAAAAGTGGGCGGAGTCGGGGGGGGGGGGGGGATTTTTGATGCGTTTTTTTGGGAACAGGTTTTGGATTTTGGGGGGGTGGTGATTTTTCTAAAGTTCAAAAATTCGAAGATTTCGAATTTGAAATGTTCAGAAACTCAGAAATTCAGAAAGATAAATCTGCCAAAACTCAAAAATTTAAAAATTCCATAGGATTTAAAAATCGGGCTCTTGAG</canonical>
            <polymorphic>TTTCAGTAGCTGTTGGACAGTAGAATGAGAGGACCAACACCGTTGTTAAATTCACAATGAGTCCTGAAACATACAAGTTACAATTTAAATTTTTTTCAAAAAAAAAAACAAAATACCGATTAGGGTCAAAAGGTTGGGTGCTACCCAGAGTGGGTAATAGATGACGACGGCCTCCCAGAACTTCTTCATACAGAGCTCATCGAGCCAGGAGGTGTCGACTGCTGAATAGACGTGCTCATCGAGTCGTTGCAGTTCTTCTCGTGTCAAAAGGCAATCGTATTGCAGGTAATGATCGATGGTTTTGCATCCGACGAGAGCGTCGGATTCTTCGAATGTTGATCGAGGACGATATGCATACCTCTCTTTGGAACGATCCTTGTCGGTGGCTCGATTATTTTTCGACCTCGATCGAGTGGTCACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAATGAAAAACTAATTGAAACGACTGATAAACGKGAAAGTCAAGAACCTGTCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTGATCAAAAAATTGGAAAATTTTTTGCAAAATCAATGTGTTTCAGAGATTAATTTAATGACACAAAAAAACAAGTTCGCACATGTGAAATTTGGACTTTGTCCGAGAGGAGTACACGAGGTGTGCGATGGAGCGCGTCTGCAAATACCACGAAGAAAATTGAGACCCCGCAAATTCCGGGGAAAAAATCGGGAAAAGTGGGCGGAGTCGGGGGGGGGGGGGGGATTTTTGATGCGTTTTTTTGGGAACAGGTTTTGGATTTTGGGGGGGTGGTGATTTTTCTAAAGTTCAAAAATTCGAAGATTTCGAATTTGAAATGTTCAGAAACTCAGAAATTCAGAAAGATAAATCTGCCAAAACTCAAAAATTTAAAAATTCCATAGGATTTAAAAATCGGGCTCTTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGCATACCTCTCTTTGGAAC</pcr_primer_p1>
		<pcr_primer_p2>CAAATAAACATTGAACAGTTGTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TATGCATACCTCTCTTTGGAACGATCCTTGTCGGTGGCTCGATTATTTTTCGACCTCGATCGAGTGGTCACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAATGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTG</canonical_amplicon>
		<polymorphic_amplicon>TATGCATACCTCTCTTTGGAACGATCCTTGTCGGTGGCTCGATTATTTTTCGACCTCGATCGAGTGGTCACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAATGAAAAACTAATTGAAACGACTGATAAACGKGAAAGTCAAGAACCTGTCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19432</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>594207</contig_pos>
        <strand></strand>
        <context>CAAGAACCTG[T/C]CAMTTTCACC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAATGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTG</left_flank>
        <right_flank>CACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTAGAATGAGAGGACCAACACCGTTGTTAAATTCACAATGAGTCCTGAAACATACAAGTTACAATTTAAATTTTTTTCAAAAAAAAAAACAAAATACCGATTAGGGTCAAAAGGTTGGGTGCTACCCAGAGTGGGTAATAGATGACGACGGCCTCCCAGAACTTCTTCATACAGAGCTCATCGAGCCAGGAGGTGTCGACTGCTGAATAGACGTGCTCATCGAGTCGTTGCAGTTCTTCTCGTGTCAAAAGGCAATCGTATTGCAGGTAATGATCGATGGTTTTGCATCCGACGAGAGCGTCGGATTCTTCGAATGTTGATCGAGGACGATATGCATACCTCTCTTTGGAACGATCCTTGTCGGTGGCTCGATTATTTTTCGACCTCGATCGAGTGGTCACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAATGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTGATCAAAAAATTGGAAAATTTTTTGCAAAATCAATGTGTTTCAGAGATTAATTTAATGACACAAAAAAACAAGTTCGCACATGTGAAATTTGGACTTTGTCCGAGAGGAGTACACGAGGTGTGCGATGGAGCGCGTCTGCAAATACCACGAAGAAAATTGAGACCCCGCAAATTCCGGGGAAAAAATCGGGAAAAGTGGGCGGAGTCGGGGGGGGGGGGGGGATTTTTGATGCGTTTTTTTGGGAACAGGTTTTGGATTTTGGGGGGGTGGTGATTTTTCTAAAGTTCAAAAATTCGAAGATTTCGAATTTGAAATGTTCAGAAACTCAGAAATTCAGAAAGATAAATCTGCCAAAACTCAAAAATTTAAAAATTCCATAGGATTTAAAAATCGGGCTCTTGAGAATGTGACCCGGGGGAG</canonical>
            <polymorphic>CAGTAGAATGAGAGGACCAACACCGTTGTTAAATTCACAATGAGTCCTGAAACATACAAGTTACAATTTAAATTTTTTTCAAAAAAAAAAACAAAATACCGATTAGGGTCAAAAGGTTGGGTGCTACCCAGAGTGGGTAATAGATGACGACGGCCTCCCAGAACTTCTTCATACAGAGCTCATCGAGCCAGGAGGTGTCGACTGCTGAATAGACGTGCTCATCGAGTCGTTGCAGTTCTTCTCGTGTCAAAAGGCAATCGTATTGCAGGTAATGATCGATGGTTTTGCATCCGACGAGAGCGTCGGATTCTTCGAATGTTGATCGAGGACGATATGCATACCTCTCTTTGGAACGATCCTTGTCGGTGGCTCGATTATTTTTCGACCTCGATCGAGTGGTCACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAATGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGYCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTGATCAAAAAATTGGAAAATTTTTTGCAAAATCAATGTGTTTCAGAGATTAATTTAATGACACAAAAAAACAAGTTCGCACATGTGAAATTTGGACTTTGTCCGAGAGGAGTACACGAGGTGTGCGATGGAGCGCGTCTGCAAATACCACGAAGAAAATTGAGACCCCGCAAATTCCGGGGAAAAAATCGGGAAAAGTGGGCGGAGTCGGGGGGGGGGGGGGGATTTTTGATGCGTTTTTTTGGGAACAGGTTTTGGATTTTGGGGGGGTGGTGATTTTTCTAAAGTTCAAAAATTCGAAGATTTCGAATTTGAAATGTTCAGAAACTCAGAAATTCAGAAAGATAAATCTGCCAAAACTCAAAAATTTAAAAATTCCATAGGATTTAAAAATCGGGCTCTTGAGAATGTGACCCGGGGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>488 339 100 59 14</canonical_bands>
                <polymorphic_bands>588 339 59 14</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>488 398 100 14</canonical_bands>
                <polymorphic_bands>588 398 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGCATACCTCTCTTTGGAAC</pcr_primer_p1>
		<pcr_primer_p2>CAAATAAACATTGAACAGTTGTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TATGCATACCTCTCTTTGGAACGATCCTTGTCGGTGGCTCGATTATTTTTCGACCTCGATCGAGTGGTCACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAATGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTG</canonical_amplicon>
		<polymorphic_amplicon>TATGCATACCTCTCTTTGGAACGATCCTTGTCGGTGGCTCGATTATTTTTCGACCTCGATCGAGTGGTCACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAATGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGYCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19433</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>594210</contig_pos>
        <strand></strand>
        <context>GAACCTGYCA[C/A]TTTCACCGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCA</left_flank>
        <right_flank>TTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGAATGAGAGGACCAACACCGTTGTTAAATTCACAATGAGTCCTGAAACATACAAGTTACAATTTAAATTTTTTTCAAAAAAAAAAACAAAATACCGATTAGGGTCAAAAGGTTGGGTGCTACCCAGAGTGGGTAATAGATGACGACGGCCTCCCAGAACTTCTTCATACAGAGCTCATCGAGCCAGGAGGTGTCGACTGCTGAATAGACGTGCTCATCGAGTCGTTGCAGTTCTTCTCGTGTCAAAAGGCAATCGTATTGCAGGTAATGATCGATGGTTTTGCATCCGACGAGAGCGTCGGATTCTTCGAATGTTGATCGAGGACGATATGCATACCTCTCTTTGGAACGATCCTTGTCGGTGGCTCGATTATTTTTCGACCTCGATCGAGTGGTCACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAATGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTGATCAAAAAATTGGAAAATTTTTTGCAAAATCAATGTGTTTCAGAGATTAATTTAATGACACAAAAAAACAAGTTCGCACATGTGAAATTTGGACTTTGTCCGAGAGGAGTACACGAGGTGTGCGATGGAGCGCGTCTGCAAATACCACGAAGAAAATTGAGACCCCGCAAATTCCGGGGAAAAAATCGGGAAAAGTGGGCGGAGTCGGGGGGGGGGGGGGGATTTTTGATGCGTTTTTTTGGGAACAGGTTTTGGATTTTGGGGGGGTGGTGATTTTTCTAAAGTTCAAAAATTCGAAGATTTCGAATTTGAAATGTTCAGAAACTCAGAAATTCAGAAAGATAAATCTGCCAAAACTCAAAAATTTAAAAATTCCATAGGATTTAAAAATCGGGCTCTTGAGAATGTGACCCGGGGGAGGGA</canonical>
            <polymorphic>TAGAATGAGAGGACCAACACCGTTGTTAAATTCACAATGAGTCCTGAAACATACAAGTTACAATTTAAATTTTTTTCAAAAAAAAAAACAAAATACCGATTAGGGTCAAAAGGTTGGGTGCTACCCAGAGTGGGTAATAGATGACGACGGCCTCCCAGAACTTCTTCATACAGAGCTCATCGAGCCAGGAGGTGTCGACTGCTGAATAGACGTGCTCATCGAGTCGTTGCAGTTCTTCTCGTGTCAAAAGGCAATCGTATTGCAGGTAATGATCGATGGTTTTGCATCCGACGAGAGCGTCGGATTCTTCGAATGTTGATCGAGGACGATATGCATACCTCTCTTTGGAACGATCCTTGTCGGTGGCTCGATTATTTTTCGACCTCGATCGAGTGGTCACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAATGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCAMTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTGATCAAAAAATTGGAAAATTTTTTGCAAAATCAATGTGTTTCAGAGATTAATTTAATGACACAAAAAAACAAGTTCGCACATGTGAAATTTGGACTTTGTCCGAGAGGAGTACACGAGGTGTGCGATGGAGCGCGTCTGCAAATACCACGAAGAAAATTGAGACCCCGCAAATTCCGGGGAAAAAATCGGGAAAAGTGGGCGGAGTCGGGGGGGGGGGGGGGATTTTTGATGCGTTTTTTTGGGAACAGGTTTTGGATTTTGGGGGGGTGGTGATTTTTCTAAAGTTCAAAAATTCGAAGATTTCGAATTTGAAATGTTCAGAAACTCAGAAATTCAGAAAGATAAATCTGCCAAAACTCAAAAATTTAAAAATTCCATAGGATTTAAAAATCGGGCTCTTGAGAATGTGACCCGGGGGAGGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>137 122 109 86 72 71 62 50 30 29 29 29 25 23 20 19 18 15 14 12 7 6 6 4 3 2</canonical_bands>
                <polymorphic_bands>137 122 109 86 77 72 62 50 30 29 29 29 25 23 20 19 18 15 14 12 7 6 4 3 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>488 339 100 56 17</canonical_bands>
                <polymorphic_bands>588 339 56 17</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>488 395 100 17</canonical_bands>
                <polymorphic_bands>588 395 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGCATACCTCTCTTTGGAAC</pcr_primer_p1>
		<pcr_primer_p2>CAAATAAACATTGAACAGTTGTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TATGCATACCTCTCTTTGGAACGATCCTTGTCGGTGGCTCGATTATTTTTCGACCTCGATCGAGTGGTCACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAATGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTG</canonical_amplicon>
		<polymorphic_amplicon>TATGCATACCTCTCTTTGGAACGATCCTTGTCGGTGGCTCGATTATTTTTCGACCTCGATCGAGTGGTCACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAATGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCAMTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19434</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>594252</contig_pos>
        <strand></strand>
        <context>TTAGGTTCAA[G/T]TATTGATTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACCTGTCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAA</left_flank>
        <right_flank>TATTGATTTATAGACAACTGTTCAATGTTTATTTGATCAAAAAATTGGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGAAACATACAAGTTACAATTTAAATTTTTTTCAAAAAAAAAAACAAAATACCGATTAGGGTCAAAAGGTTGGGTGCTACCCAGAGTGGGTAATAGATGACGACGGCCTCCCAGAACTTCTTCATACAGAGCTCATCGAGCCAGGAGGTGTCGACTGCTGAATAGACGTGCTCATCGAGTCGTTGCAGTTCTTCTCGTGTCAAAAGGCAATCGTATTGCAGGTAATGATCGATGGTTTTGCATCCGACGAGAGCGTCGGATTCTTCGAATGTTGATCGAGGACGATATGCATACCTCTCTTTGGAACGATCCTTGTCGGTGGCTCGATTATTTTTCGACCTCGATCGAGTGGTCACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAATGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTGATCAAAAAATTGGAAAATTTTTTGCAAAATCAATGTGTTTCAGAGATTAATTTAATGACACAAAAAAACAAGTTCGCACATGTGAAATTTGGACTTTGTCCGAGAGGAGTACACGAGGTGTGCGATGGAGCGCGTCTGCAAATACCACGAAGAAAATTGAGACCCCGCAAATTCCGGGGAAAAAATCGGGAAAAGTGGGCGGAGTCGGGGGGGGGGGGGGGATTTTTGATGCGTTTTTTTGGGAACAGGTTTTGGATTTTGGGGGGGTGGTGATTTTTCTAAAGTTCAAAAATTCGAAGATTTCGAATTTGAAATGTTCAGAAACTCAGAAATTCAGAAAGATAAATCTGCCAAAACTCAAAAATTTAAAAATTCCATAGGATTTAAAAATCGGGCTCTTGAGAATGTGACCCGGGGGAGGGATCCAGGAATCCGGAGATCCGAAAATCCGGGAATTCGGGAATT</canonical>
            <polymorphic>CCTGAAACATACAAGTTACAATTTAAATTTTTTTCAAAAAAAAAAACAAAATACCGATTAGGGTCAAAAGGTTGGGTGCTACCCAGAGTGGGTAATAGATGACGACGGCCTCCCAGAACTTCTTCATACAGAGCTCATCGAGCCAGGAGGTGTCGACTGCTGAATAGACGTGCTCATCGAGTCGTTGCAGTTCTTCTCGTGTCAAAAGGCAATCGTATTGCAGGTAATGATCGATGGTTTTGCATCCGACGAGAGCGTCGGATTCTTCGAATGTTGATCGAGGACGATATGCATACCTCTCTTTGGAACGATCCTTGTCGGTGGCTCGATTATTTTTCGACCTCGATCGAGTGGTCACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAATGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAKTATTGATTTATAGACAACTGTTCAATGTTTATTTGATCAAAAAATTGGAAAATTTTTTGCAAAATCAATGTGTTTCAGAGATTAATTTAATGACACAAAAAAACAAGTTCGCACATGTGAAATTTGGACTTTGTCCGAGAGGAGTACACGAGGTGTGCGATGGAGCGCGTCTGCAAATACCACGAAGAAAATTGAGACCCCGCAAATTCCGGGGAAAAAATCGGGAAAAGTGGGCGGAGTCGGGGGGGGGGGGGGGATTTTTGATGCGTTTTTTTGGGAACAGGTTTTGGATTTTGGGGGGGTGGTGATTTTTCTAAAGTTCAAAAATTCGAAGATTTCGAATTTGAAATGTTCAGAAACTCAGAAATTCAGAAAGATAAATCTGCCAAAACTCAAAAATTTAAAAATTCCATAGGATTTAAAAATCGGGCTCTTGAGAATGTGACCCGGGGGAGGGATCCAGGAATCCGGAGATCCGAAAATCCGGGAATTCGGGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGAAGTTGAGTGAATTTGTAT</pcr_primer_p1>
		<pcr_primer_p2>TGTACTCCTCTCGGACAAAG</pcr_primer_p2>
		<pcr_amplicon_size>276</pcr_amplicon_size>
		<canonical_amplicon>CGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAATGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTGATCAAAAAATTGGAAAATTTTTTGCAAAATCAATGTGTTTCAGAGATTAATTTAATGACACAAAAAAACAAGTTCGCACATGTGAAATTTGGACTTTGTCCGAGAGGAGTACA</canonical_amplicon>
		<polymorphic_amplicon>CGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAATGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAKTATTGATTTATAGACAACTGTTCAATGTTTATTTGATCAAAAAATTGGAAAATTTTTTGCAAAATCAATGTGTTTCAGAGATTAATTTAATGACACAAAAAAACAAGTTCGCACATGTGAAATTTGGACTTTGTCCGAGAGGAGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19435</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>594297</contig_pos>
        <strand></strand>
        <context>GATCAAAAAA[T/A]TGGAAAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTGATCAAAAAA</left_flank>
        <right_flank>TGGAAAATTTTTTGCAAAATCAATGTGTTTCAGAGATTAATTTAATGACA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAAAATACCGATTAGGGTCAAAAGGTTGGGTGCTACCCAGAGTGGGTAATAGATGACGACGGCCTCCCAGAACTTCTTCATACAGAGCTCATCGAGCCAGGAGGTGTCGACTGCTGAATAGACGTGCTCATCGAGTCGTTGCAGTTCTTCTCGTGTCAAAAGGCAATCGTATTGCAGGTAATGATCGATGGTTTTGCATCCGACGAGAGCGTCGGATTCTTCGAATGTTGATCGAGGACGATATGCATACCTCTCTTTGGAACGATCCTTGTCGGTGGCTCGATTATTTTTCGACCTCGATCGAGTGGTCACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAATGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTGATCAAAAAATTGGAAAATTTTTTGCAAAATCAATGTGTTTCAGAGATTAATTTAATGACACAAAAAAACAAGTTCGCACATGTGAAATTTGGACTTTGTCCGAGAGGAGTACACGAGGTGTGCGATGGAGCGCGTCTGCAAATACCACGAAGAAAATTGAGACCCCGCAAATTCCGGGGAAAAAATCGGGAAAAGTGGGCGGAGTCGGGGGGGGGGGGGGGATTTTTGATGCGTTTTTTTGGGAACAGGTTTTGGATTTTGGGGGGGTGGTGATTTTTCTAAAGTTCAAAAATTCGAAGATTTCGAATTTGAAATGTTCAGAAACTCAGAAATTCAGAAAGATAAATCTGCCAAAACTCAAAAATTTAAAAATTCCATAGGATTTAAAAATCGGGCTCTTGAGAATGTGACCCGGGGGAGGGATCCAGGAATCCGGAGATCCGAAAATCCGGGAATTCGGGAATTCGTGAATCCGGGAATTCGGGAATCCGAGAATTCGGAAACCCGGGA</canonical>
            <polymorphic>ACAAAATACCGATTAGGGTCAAAAGGTTGGGTGCTACCCAGAGTGGGTAATAGATGACGACGGCCTCCCAGAACTTCTTCATACAGAGCTCATCGAGCCAGGAGGTGTCGACTGCTGAATAGACGTGCTCATCGAGTCGTTGCAGTTCTTCTCGTGTCAAAAGGCAATCGTATTGCAGGTAATGATCGATGGTTTTGCATCCGACGAGAGCGTCGGATTCTTCGAATGTTGATCGAGGACGATATGCATACCTCTCTTTGGAACGATCCTTGTCGGTGGCTCGATTATTTTTCGACCTCGATCGAGTGGTCACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAATGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTGATCAAAAAAWTGGAAAATTTTTTGCAAAATCAATGTGTTTCAGAGATTAATTTAATGACACAAAAAAACAAGTTCGCACATGTGAAATTTGGACTTTGTCCGAGAGGAGTACACGAGGTGTGCGATGGAGCGCGTCTGCAAATACCACGAAGAAAATTGAGACCCCGCAAATTCCGGGGAAAAAATCGGGAAAAGTGGGCGGAGTCGGGGGGGGGGGGGGGATTTTTGATGCGTTTTTTTGGGAACAGGTTTTGGATTTTGGGGGGGTGGTGATTTTTCTAAAGTTCAAAAATTCGAAGATTTCGAATTTGAAATGTTCAGAAACTCAGAAATTCAGAAAGATAAATCTGCCAAAACTCAAAAATTTAAAAATTCCATAGGATTTAAAAATCGGGCTCTTGAGAATGTGACCCGGGGGAGGGATCCAGGAATCCGGAGATCCGAAAATCCGGGAATTCGGGAATTCGTGAATCCGGGAATTCGGGAATCCGAGAATTCGGAAACCCGGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>341 121 83 76 69 50 37 33 32 25 20 17 16 16 15 15 10 8 8 8</canonical_bands>
                <polymorphic_bands>341 121 84 83 69 50 37 33 32 25 20 17 16 16 15 15 10 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCACCGAATTTCTAGTTTTTA</pcr_primer_p1>
		<pcr_primer_p2>TCTTCGTGGTATTTGCAGAC</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>TTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTGATCAAAAAATTGGAAAATTTTTTGCAAAATCAATGTGTTTCAGAGATTAATTTAATGACACAAAAAAACAAGTTCGCACATGTGAAATTTGGACTTTGTCCGAGAGGAGTACACGAGGTGTGCGATGGAGCGCGTCTGCAAATACCACGAAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTGATCAAAAAAWTGGAAAATTTTTTGCAAAATCAATGTGTTTCAGAGATTAATTTAATGACACAAAAAAACAAGTTCGCACATGTGAAATTTGGACTTTGTCCGAGAGGAGTACACGAGGTGTGCGATGGAGCGCGTCTGCAAATACCACGAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19436</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>594318</contig_pos>
        <strand></strand>
        <context>TTTGCAAAAT[C/A]AATGTGTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AACTGTTCAATGTTTATTTGATCAAAAAATTGGAAAATTTTTTGCAAAAT</left_flank>
        <right_flank>AATGTGTTTCAGAGATTAATTTAATGACACAAAAAAACAAGTTCGCACAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGGTTGGGTGCTACCCAGAGTGGGTAATAGATGACGACGGCCTCCCAGAACTTCTTCATACAGAGCTCATCGAGCCAGGAGGTGTCGACTGCTGAATAGACGTGCTCATCGAGTCGTTGCAGTTCTTCTCGTGTCAAAAGGCAATCGTATTGCAGGTAATGATCGATGGTTTTGCATCCGACGAGAGCGTCGGATTCTTCGAATGTTGATCGAGGACGATATGCATACCTCTCTTTGGAACGATCCTTGTCGGTGGCTCGATTATTTTTCGACCTCGATCGAGTGGTCACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAATGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTGATCAAAAAATTGGAAAATTTTTTGCAAAATCAATGTGTTTCAGAGATTAATTTAATGACACAAAAAAACAAGTTCGCACATGTGAAATTTGGACTTTGTCCGAGAGGAGTACACGAGGTGTGCGATGGAGCGCGTCTGCAAATACCACGAAGAAAATTGAGACCCCGCAAATTCCGGGGAAAAAATCGGGAAAAGTGGGCGGAGTCGGGGGGGGGGGGGGGATTTTTGATGCGTTTTTTTGGGAACAGGTTTTGGATTTTGGGGGGGTGGTGATTTTTCTAAAGTTCAAAAATTCGAAGATTTCGAATTTGAAATGTTCAGAAACTCAGAAATTCAGAAAGATAAATCTGCCAAAACTCAAAAATTTAAAAATTCCATAGGATTTAAAAATCGGGCTCTTGAGAATGTGACCCGGGGGAGGGATCCAGGAATCCGGAGATCCGAAAATCCGGGAATTCGGGAATTCGTGAATCCGGGAATTCGGGAATCCGAGAATTCGGAAACCCGGGATACCGGGGCCCAGGAATTCAG</canonical>
            <polymorphic>AAAGGTTGGGTGCTACCCAGAGTGGGTAATAGATGACGACGGCCTCCCAGAACTTCTTCATACAGAGCTCATCGAGCCAGGAGGTGTCGACTGCTGAATAGACGTGCTCATCGAGTCGTTGCAGTTCTTCTCGTGTCAAAAGGCAATCGTATTGCAGGTAATGATCGATGGTTTTGCATCCGACGAGAGCGTCGGATTCTTCGAATGTTGATCGAGGACGATATGCATACCTCTCTTTGGAACGATCCTTGTCGGTGGCTCGATTATTTTTCGACCTCGATCGAGTGGTCACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAATGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTGATCAAAAAATTGGAAAATTTTTTGCAAAATMAATGTGTTTCAGAGATTAATTTAATGACACAAAAAAACAAGTTCGCACATGTGAAATTTGGACTTTGTCCGAGAGGAGTACACGAGGTGTGCGATGGAGCGCGTCTGCAAATACCACGAAGAAAATTGAGACCCCGCAAATTCCGGGGAAAAAATCGGGAAAAGTGGGCGGAGTCGGGGGGGGGGGGGGGATTTTTGATGCGTTTTTTTGGGAACAGGTTTTGGATTTTGGGGGGGTGGTGATTTTTCTAAAGTTCAAAAATTCGAAGATTTCGAATTTGAAATGTTCAGAAACTCAGAAATTCAGAAAGATAAATCTGCCAAAACTCAAAAATTTAAAAATTCCATAGGATTTAAAAATCGGGCTCTTGAGAATGTGACCCGGGGGAGGGATCCAGGAATCCGGAGATCCGAAAATCCGGGAATTCGGGAATTCGTGAATCCGGGAATTCGGGAATCCGAGAATTCGGAAACCCGGGATACCGGGGCCCAGGAATTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCACCGAATTTCTAGTTTTTA</pcr_primer_p1>
		<pcr_primer_p2>TCTTCGTGGTATTTGCAGAC</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>TTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTGATCAAAAAATTGGAAAATTTTTTGCAAAATCAATGTGTTTCAGAGATTAATTTAATGACACAAAAAAACAAGTTCGCACATGTGAAATTTGGACTTTGTCCGAGAGGAGTACACGAGGTGTGCGATGGAGCGCGTCTGCAAATACCACGAAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTGATCAAAAAATTGGAAAATTTTTTGCAAAATMAATGTGTTTCAGAGATTAATTTAATGACACAAAAAAACAAGTTCGCACATGTGAAATTTGGACTTTGTCCGAGAGGAGTACACGAGGTGTGCGATGGAGCGCGTCTGCAAATACCACGAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19437</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>594359</contig_pos>
        <strand></strand>
        <context>AAAAAAACAA[G/C]TTCGCACATG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TTGCAAAATCAATGTGTTTCAGAGATTAATTTAATGACACAAAAAAACAA</left_flank>
        <right_flank>TTCGCACATGTGAAATTTGGACTTTGTCCGAGAGGAGTACACGAGGTGTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCTCCCAGAACTTCTTCATACAGAGCTCATCGAGCCAGGAGGTGTCGACTGCTGAATAGACGTGCTCATCGAGTCGTTGCAGTTCTTCTCGTGTCAAAAGGCAATCGTATTGCAGGTAATGATCGATGGTTTTGCATCCGACGAGAGCGTCGGATTCTTCGAATGTTGATCGAGGACGATATGCATACCTCTCTTTGGAACGATCCTTGTCGGTGGCTCGATTATTTTTCGACCTCGATCGAGTGGTCACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAATGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTGATCAAAAAATTGGAAAATTTTTTGCAAAATCAATGTGTTTCAGAGATTAATTTAATGACACAAAAAAACAAGTTCGCACATGTGAAATTTGGACTTTGTCCGAGAGGAGTACACGAGGTGTGCGATGGAGCGCGTCTGCAAATACCACGAAGAAAATTGAGACCCCGCAAATTCCGGGGAAAAAATCGGGAAAAGTGGGCGGAGTCGGGGGGGGGGGGGGGATTTTTGATGCGTTTTTTTGGGAACAGGTTTTGGATTTTGGGGGGGTGGTGATTTTTCTAAAGTTCAAAAATTCGAAGATTTCGAATTTGAAATGTTCAGAAACTCAGAAATTCAGAAAGATAAATCTGCCAAAACTCAAAAATTTAAAAATTCCATAGGATTTAAAAATCGGGCTCTTGAGAATGTGACCCGGGGGAGGGATCCAGGAATCCGGAGATCCGAAAATCCGGGAATTCGGGAATTCGTGAATCCGGGAATTCGGGAATCCGAGAATTCGGAAACCCGGGATACCGGGGCCCAGGAATTCAGAAANNNNNNNNNNACCGGGGGGGGAGGGCGGAGCCTAAATT</canonical>
            <polymorphic>GCCTCCCAGAACTTCTTCATACAGAGCTCATCGAGCCAGGAGGTGTCGACTGCTGAATAGACGTGCTCATCGAGTCGTTGCAGTTCTTCTCGTGTCAAAAGGCAATCGTATTGCAGGTAATGATCGATGGTTTTGCATCCGACGAGAGCGTCGGATTCTTCGAATGTTGATCGAGGACGATATGCATACCTCTCTTTGGAACGATCCTTGTCGGTGGCTCGATTATTTTTCGACCTCGATCGAGTGGTCACCATTTCTATAAATGCGAGAAGTTGAGTGAATTTGTATCAATTTTCAAAATGAAAAACTAATTGAAACGACTGATAAACGGGAAAGTCAAGAACCTGTCACTTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTGATCAAAAAATTGGAAAATTTTTTGCAAAATCAATGTGTTTCAGAGATTAATTTAATGACACAAAAAAACAASTTCGCACATGTGAAATTTGGACTTTGTCCGAGAGGAGTACACGAGGTGTGCGATGGAGCGCGTCTGCAAATACCACGAAGAAAATTGAGACCCCGCAAATTCCGGGGAAAAAATCGGGAAAAGTGGGCGGAGTCGGGGGGGGGGGGGGGATTTTTGATGCGTTTTTTTGGGAACAGGTTTTGGATTTTGGGGGGGTGGTGATTTTTCTAAAGTTCAAAAATTCGAAGATTTCGAATTTGAAATGTTCAGAAACTCAGAAATTCAGAAAGATAAATCTGCCAAAACTCAAAAATTTAAAAATTCCATAGGATTTAAAAATCGGGCTCTTGAGAATGTGACCCGGGGGAGGGATCCAGGAATCCGGAGATCCGAAAATCCGGGAATTCGGGAATTCGTGAATCCGGGAATTCGGGAATCCGAGAATTCGGAAACCCGGGATACCGGGGCCCAGGAATTCAGAAANNNNNNNNNNACCGGGGGGGGAGGGCGGAGCCTAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCACCGAATTTCTAGTTTTTA</pcr_primer_p1>
		<pcr_primer_p2>TCTTCGTGGTATTTGCAGAC</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>TTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTGATCAAAAAATTGGAAAATTTTTTGCAAAATCAATGTGTTTCAGAGATTAATTTAATGACACAAAAAAACAAGTTCGCACATGTGAAATTTGGACTTTGTCCGAGAGGAGTACACGAGGTGTGCGATGGAGCGCGTCTGCAAATACCACGAAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTCACCGAATTTCTAGTTTTTATGATACATTTAGGTTCAAGTATTGATTTATAGACAACTGTTCAATGTTTATTTGATCAAAAAATTGGAAAATTTTTTGCAAAATCAATGTGTTTCAGAGATTAATTTAATGACACAAAAAAACAASTTCGCACATGTGAAATTTGGACTTTGTCCGAGAGGAGTACACGAGGTGTGCGATGGAGCGCGTCTGCAAATACCACGAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19439</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>688468</contig_pos>
        <strand>+</strand>
        <context>RGTCTGCGGA[G/T]TTTTTTGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTATGAAAAACCAATAAAAAAAGTTAATTTTTGGTTTCAGAGTCTGCGGA</left_flank>
        <right_flank>TTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTTGATTGGAGC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGAAAAAGCTGTGTTCTGTTCAAACTGTTGACAAAAAATGATATGACTCCTCGTAGAGCCCTGGGTATGGAGGAGTCAAGCTTGATAGGAAAGAAACTACCCAAAAGTTACAGATTTCGAAAACTATTCTTTTGTAGTAAAAAGAACCGATACTCATAAATCAGATTTATTTCAAGAAGCTTTAAAAATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAACAGTCGATATTATGAAAAACCAATAAAAAAAGTTAATTTTTGGTTTCAGAGTCTGCGGATTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTTGATTGGAGCAGCAAAAGCAGAGATAGCAAGGGAGACGAAAAGGAAGTAGAATAGGTTGAACATATTCAAGTTTTGATAGTTTTCAATTGAAGATCCAAACCTTTTATACTAGAACTTCGTATTTTGATTTTCATGCTGACTCAGGCCGCTTTAAAATATAAAATAACAAAAATCGTATTTAGTTCCCCTATTTTAGTGAGGTCATCAAACTATGAAATATGTCTGTGTCTCTTCCCTATTTTTGAAAAAATAGTTGTAACATTTTGTCCGTAGAGTTGGTTTTCCTCTGATTCATAGATAGAGATATGTTTTGGAAAACTCACTGAAGTTTTTTATGAGAGGCACAAAAACACTGTAATTCCCATAATAGAACGCCTCTCCTATACTTTCACTTTGAGCCTAATATGTATCTCGTTTAATGTAAGAGATATCAAAGAGCTATCAACGGAAAAGTACATA</canonical>
            <polymorphic>ATTTGAAAAAGCTGTGTTCTGTTCAAACTGTTGACAAAAAATGATATGACTCCTCGTAGAGCCCTGGGTATGGAGGAGTCAAGCTTGATAGGAAAGAAACTACCCAAAAGTTACAGATTTCGAAAACTATTCTTTTGTAGTAAAAAGAACCGATACTCATAAATCAGATTTATTTCAAGAAGCTTTAAAAATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAACAGTCGATATTATGAAAAACCAATAAAAAAAGTTAATTTTTGGTTTCAGAGTCTGCGGAKTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTTGATTGGAGCAGCAAAAGCAGAGATAGCAAGGGAGACGAAAAGGAAGTAGAATAGGTTGAACATATTCAAGTTTTGATAGTTTTCAATTGAAGATCCAAACCTTTTATACTAGAACTTCGTATTTTGATTTTCATGCTGACTCAGGCCGCTTTAAAATATAAAATAACAAAAATCGTATTTAGTTCCCCTATTTTAGTGAGGTCATCAAACTATGAAATATGTCTGTGTCTCTTCCCTATTTTTGAAAAAATAGTTGTAACATTTTGTCCGTAGAGTTGGTTTTCCTCTGATTCATAGATAGAGATATGTTTTGGAAAACTCACTGAAGTTTTTTATGAGAGGCACAAAAACACTGTAATTCCCATAATAGAACGCCTCTCCTATACTTTCACTTTGAGCCTAATATGTATCTCGTTTAATGTAAGAGATATCAAAGAGCTATCAACGGAAAAGTACATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAAAACAGTCGATATTATGAAA</pcr_primer_p1>
		<pcr_primer_p2>AGTCAGCATGAAAATCAAAATAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGAAAACAGTCGATATTATGAAAAACCAATAAAAAAAGTTAATTTTTGGTTTCAGAGTCTGCGGATTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTTGATTGGAGCAGCAAAAGCAGAGATAGCAAGGGAGACGAAAAGGAAGTAGAATAGGTTGAACATATTCAAGTTTTGATAGTTTTCAATTGAAGATCCAAACCTTTTATACTAGAACTTCGTATTTTGATTTTCATGCTGACT</canonical_amplicon>
		<polymorphic_amplicon>CGAAAACAGTCGATATTATGAAAAACCAATAAAAAAAGTTAATTTTTGGTTTCAGAGTCTGCGGAKTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTTGATTGGAGCAGCAAAAGCAGAGATAGCAAGGGAGACGAAAAGGAAGTAGAATAGGTTGAACATATTCAAGTTTTGATAGTTTTCAATTGAAGATCCAAACCTTTTATACTAGAACTTCGTATTTTGATTTTCATGCTGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19440</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>688458</contig_pos>
        <strand>+</strand>
        <context>TTGGTTTCAG[A/G]GTCTGCGGAK</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAGTCGATATTATGAAAAACCAATAAAAAAAGTTAATTTTTGGTTTCAG</left_flank>
        <right_flank>GTCTGCGGATTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATAAATCATATTTGAAAAAGCTGTGTTCTGTTCAAACTGTTGACAAAAAATGATATGACTCCTCGTAGAGCCCTGGGTATGGAGGAGTCAAGCTTGATAGGAAAGAAACTACCCAAAAGTTACAGATTTCGAAAACTATTCTTTTGTAGTAAAAAGAACCGATACTCATAAATCAGATTTATTTCAAGAAGCTTTAAAAATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAACAGTCGATATTATGAAAAACCAATAAAAAAAGTTAATTTTTGGTTTCAGAGTCTGCGGATTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTTGATTGGAGCAGCAAAAGCAGAGATAGCAAGGGAGACGAAAAGGAAGTAGAATAGGTTGAACATATTCAAGTTTTGATAGTTTTCAATTGAAGATCCAAACCTTTTATACTAGAACTTCGTATTTTGATTTTCATGCTGACTCAGGCCGCTTTAAAATATAAAATAACAAAAATCGTATTTAGTTCCCCTATTTTAGTGAGGTCATCAAACTATGAAATATGTCTGTGTCTCTTCCCTATTTTTGAAAAAATAGTTGTAACATTTTGTCCGTAGAGTTGGTTTTCCTCTGATTCATAGATAGAGATATGTTTTGGAAAACTCACTGAAGTTTTTTATGAGAGGCACAAAAACACTGTAATTCCCATAATAGAACGCCTCTCCTATACTTTCACTTTGAGCCTAATATGTATCTCGTTTAATGTAAGAGATATCAAAGAGCTATCAACGGA</canonical>
            <polymorphic>TATAAATCATATTTGAAAAAGCTGTGTTCTGTTCAAACTGTTGACAAAAAATGATATGACTCCTCGTAGAGCCCTGGGTATGGAGGAGTCAAGCTTGATAGGAAAGAAACTACCCAAAAGTTACAGATTTCGAAAACTATTCTTTTGTAGTAAAAAGAACCGATACTCATAAATCAGATTTATTTCAAGAAGCTTTAAAAATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAACAGTCGATATTATGAAAAACCAATAAAAAAAGTTAATTTTTGGTTTCAGRGTCTGCGGATTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTTGATTGGAGCAGCAAAAGCAGAGATAGCAAGGGAGACGAAAAGGAAGTAGAATAGGTTGAACATATTCAAGTTTTGATAGTTTTCAATTGAAGATCCAAACCTTTTATACTAGAACTTCGTATTTTGATTTTCATGCTGACTCAGGCCGCTTTAAAATATAAAATAACAAAAATCGTATTTAGTTCCCCTATTTTAGTGAGGTCATCAAACTATGAAATATGTCTGTGTCTCTTCCCTATTTTTGAAAAAATAGTTGTAACATTTTGTCCGTAGAGTTGGTTTTCCTCTGATTCATAGATAGAGATATGTTTTGGAAAACTCACTGAAGTTTTTTATGAGAGGCACAAAAACACTGTAATTCCCATAATAGAACGCCTCTCCTATACTTTCACTTTGAGCCTAATATGTATCTCGTTTAATGTAAGAGATATCAAAGAGCTATCAACGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>190 160 151 135 123 70 58 41 32 28 12</canonical_bands>
                <polymorphic_bands>260 160 151 135 123 58 41 32 28 12</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>341 176 161 161 70 58 33</canonical_bands>
                <polymorphic_bands>399 176 161 161 70 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAAAACAGTCGATATTATGAAA</pcr_primer_p1>
		<pcr_primer_p2>AGTCAGCATGAAAATCAAAATAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGAAAACAGTCGATATTATGAAAAACCAATAAAAAAAGTTAATTTTTGGTTTCAGAGTCTGCGGATTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTTGATTGGAGCAGCAAAAGCAGAGATAGCAAGGGAGACGAAAAGGAAGTAGAATAGGTTGAACATATTCAAGTTTTGATAGTTTTCAATTGAAGATCCAAACCTTTTATACTAGAACTTCGTATTTTGATTTTCATGCTGACT</canonical_amplicon>
		<polymorphic_amplicon>CGAAAACAGTCGATATTATGAAAAACCAATAAAAAAAGTTAATTTTTGGTTTCAGRGTCTGCGGATTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTTGATTGGAGCAGCAAAAGCAGAGATAGCAAGGGAGACGAAAAGGAAGTAGAATAGGTTGAACATATTCAAGTTTTGATAGTTTTCAATTGAAGATCCAAACCTTTTATACTAGAACTTCGTATTTTGATTTTCATGCTGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19441</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>688436</contig_pos>
        <strand>+</strand>
        <context>AACCAATAAA[A/G]AAAGTTAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATTCTTCTTCTGAAACGAAAACAGTCGATATTATGAAAAACCAATAAA</left_flank>
        <right_flank>AAAGTTAATTTTTGGTTTCAGAGTCTGCGGATTTTTTTGAAAAAGCACTG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTACTAATATATATTTCTTATATAAATCATATTTGAAAAAGCTGTGTTCTGTTCAAACTGTTGACAAAAAATGATATGACTCCTCGTAGAGCCCTGGGTATGGAGGAGTCAAGCTTGATAGGAAAGAAACTACCCAAAAGTTACAGATTTCGAAAACTATTCTTTTGTAGTAAAAAGAACCGATACTCATAAATCAGATTTATTTCAAGAAGCTTTAAAAATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAACAGTCGATATTATGAAAAACCAATAAAAAAAGTTAATTTTTGGTTTCAGAGTCTGCGGATTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTTGATTGGAGCAGCAAAAGCAGAGATAGCAAGGGAGACGAAAAGGAAGTAGAATAGGTTGAACATATTCAAGTTTTGATAGTTTTCAATTGAAGATCCAAACCTTTTATACTAGAACTTCGTATTTTGATTTTCATGCTGACTCAGGCCGCTTTAAAATATAAAATAACAAAAATCGTATTTAGTTCCCCTATTTTAGTGAGGTCATCAAACTATGAAATATGTCTGTGTCTCTTCCCTATTTTTGAAAAAATAGTTGTAACATTTTGTCCGTAGAGTTGGTTTTCCTCTGATTCATAGATAGAGATATGTTTTGGAAAACTCACTGAAGTTTTTTATGAGAGGCACAAAAACACTGTAATTCCCATAATAGAACGCCTCTCCTATACTTTCACTTTGAGCCTAATATGTATCTCGTTTAATGTAAGAG</canonical>
            <polymorphic>CCTTACTAATATATATTTCTTATATAAATCATATTTGAAAAAGCTGTGTTCTGTTCAAACTGTTGACAAAAAATGATATGACTCCTCGTAGAGCCCTGGGTATGGAGGAGTCAAGCTTGATAGGAAAGAAACTACCCAAAAGTTACAGATTTCGAAAACTATTCTTTTGTAGTAAAAAGAACCGATACTCATAAATCAGATTTATTTCAAGAAGCTTTAAAAATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAACAGTCGATATTATGAAAAACCAATAAARAAAGTTAATTTTTGGTTTCAGAGTCTGCGGATTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTTGATTGGAGCAGCAAAAGCAGAGATAGCAAGGGAGACGAAAAGGAAGTAGAATAGGTTGAACATATTCAAGTTTTGATAGTTTTCAATTGAAGATCCAAACCTTTTATACTAGAACTTCGTATTTTGATTTTCATGCTGACTCAGGCCGCTTTAAAATATAAAATAACAAAAATCGTATTTAGTTCCCCTATTTTAGTGAGGTCATCAAACTATGAAATATGTCTGTGTCTCTTCCCTATTTTTGAAAAAATAGTTGTAACATTTTGTCCGTAGAGTTGGTTTTCCTCTGATTCATAGATAGAGATATGTTTTGGAAAACTCACTGAAGTTTTTTATGAGAGGCACAAAAACACTGTAATTCCCATAATAGAACGCCTCTCCTATACTTTCACTTTGAGCCTAATATGTATCTCGTTTAATGTAAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTATCAGTTGCTTCCTTGTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTATCCAACTGGTCAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAACAGTCGATATTATGAAAAACCAATAAAAAAAGTTAATTTTTGGTTTCAGAGTCTGCGGATTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTT</canonical_amplicon>
		<polymorphic_amplicon>AATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAACAGTCGATATTATGAAAAACCAATAAARAAAGTTAATTTTTGGTTTCAGAGTCTGCGGATTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19443</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>737661</contig_pos>
        <strand></strand>
        <context>TGAAATCCAA[A/T]TTTTTTTCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACCCCCAAAAGTCTTCTTTAAGACTACAAATTTTTGATATGAAATCCAA</left_flank>
        <right_flank>TTTTTTTCAATTTGCAATAAAGTTATGACCCAATATGTTAATTGAGTCCA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGTAGGAGATGATGCTGGATTTTGTACGAATTGTCCAAAAGCTGTGATGAGGGAAGCCAGTTGTTGAGTCAGGTCTGCCATAGCCTTTGCCTGACCGCTAGTTTTGCCTGATCGCCAAAATAGAAAGGGTTAGTGAACCAGGGTAGTTCACGTCAATAATAATAATACATTCAACTTATAAGAATAGGCGTAGAATGTAACAACATCAAAAGTCAGTGTTCCACTTTGTACGATGTGTGACTTAGCTCTATATTAGGCTGACGACTATCCTCACGAGCTGAAAAAAAAGGGAACTTTTTCGCCCAATTTTGTAGCATCCGGCAGACCTGTACCATCGTTCTTCCTGATGGTTCGACGTTGACGACGGCTCTTCCAACAATGTAGATCTCATCGTTGTCCTCTCTGGTATCCTCCGAATTTCGACTCACATATGCTCAATATCAAACCGAACCCCCAAAAGTCTTCTTTAAGACTACAAATTTTTGATATGAAATCCAAATTTTTTTCAATTTGCAATAAAGTTATGACCCAATATGTTAATTGAGTCCAAATATCCTCTATTCTCAATTCCCGAAAATCCTGTCAACTGATAAAATGTTGCTGGTCTTATTCTTGATATTTTATCAGTTGACAGTTTCTTGGTATTTTTCATGGGAGCCAAGATAATTAAGGTCAAAGTGCAAGCACCACGCGAAAACCCAACATTTCACACTTTGAGCTCAATTATATCTCGGTTCCTATAAAAGATATCAAAAACTTGTTGACTGATTTTGCTGATATTATGCTTAACATTTTATCAATTAACCACTTTTTGATATCTCTACTACTATCGATGTGGATGTGAAGTGTCCAAGCTGCGAAGAACAGTTCCAATCCATACCTAACATTGAGTTCTCTAGAACTGCTCACAACGCAATGAACGATCTTTGCCAAAGTTCTAGAAGCTCTCAAGGTTTTATCTATTTCAGACATATACAACAAACTCTTTCCCTAGTCGGT</canonical>
            <polymorphic>AGGTAGGAGATGATGCTGGATTTTGTACGAATTGTCCAAAAGCTGTGATGAGGGAAGCCAGTTGTTGAGTCAGGTCTGCCATAGCCTTTGCCTGACCGCTAGTTTTGCCTGATCGCCAAAATAGAAAGGGTTAGTGAACCAGGGTAGTTCACGTCAATAATAATAATACATTCAACTTATAAGAATAGGCGTAGAATGTAACAACATCAAAAGTCAGTGTTCCACTTTGTACGATGTGTGACTTAGCTCTATATTAGGCTGACGACTATCCTCACGAGCTGAAAAAAAAGGGAACTTTTTCGCCCAATTTTGTAGCATCCGGCAGACCTGTACCATCGTTCTTCCTGATGGTTCGACGTTGACGACGGCTCTTCCAACAATGTAGATCTCATCGTTGTCCTCTCTGGTATCCTCCGAATTTCGACTCACATATGCTCAATATCAAACCGAACCCCCAAAAGTCTTCTTTAAGACTACAAATTTTTGATATGAAATCCAAWTTTTTTTCAATTTGCAATAAAGTTATGACCCAATATGTTAATTGAGTCCAAATATCCTCTATTCTCAATTCCCGAAAATCCTGTCAACTGATAAAATGTTGCTGGTCTTATTCTTGATATTTTATCAGTTGACAGTTTCTTGGTATTTTTCATGGGAGCCAAGATAATTAAGGTCAAAGTGCAAGCACCACGCGAAAACCCAACATTTCACACTTTGAGCTCAATTATATCTCGGTTCCTATAAAAGATATCAAAAACTTGTTGACTGATTTTGCTGATATTATGCTTAACATTTTATCAATTAACCACTTTTTGATATCTCTACTACTATCGATGTGGATGTGAAGTGTCCAAGCTGCGAAGAACAGTTCCAATCCATACCTAACATTGAGTTCTCTAGAACTGCTCACAACGCAATGAACGATCTTTGCCAAAGTTCTAGAAGCTCTCAAGGTTTTATCTATTTCAGACATATACAACAAACTCTTTCCCTAGTCGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>502 416 62 20</canonical_bands>
                <polymorphic_bands>522 416 62</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>276 201 111 99 77 62 57 31 29 27 20 10</canonical_bands>
                <polymorphic_bands>276 201 111 99 77 62 57 31 30 29 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACCTGTACCATCGTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>GGGAATTGAGAATAGAGGATATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGACCTGTACCATCGTTCTTCCTGATGGTTCGACGTTGACGACGGCTCTTCCAACAATGTAGATCTCATCGTTGTCCTCTCTGGTATCCTCCGAATTTCGACTCACATATGCTCAATATCAAACCGAACCCCCAAAAGTCTTCTTTAAGACTACAAATTTTTGATATGAAATCCAAATTTTTTTCAATTTGCAATAAAGTTATGACCCAATATGTTAATTGAGTCCAAATATCCTCTATTCTCAATTCCC</canonical_amplicon>
		<polymorphic_amplicon>AGACCTGTACCATCGTTCTTCCTGATGGTTCGACGTTGACGACGGCTCTTCCAACAATGTAGATCTCATCGTTGTCCTCTCTGGTATCCTCCGAATTTCGACTCACATATGCTCAATATCAAACCGAACCCCCAAAAGTCTTCTTTAAGACTACAAATTTTTGATATGAAATCCAAWTTTTTTTCAATTTGCAATAAAGTTATGACCCAATATGTTAATTGAGTCCAAATATCCTCTATTCTCAATTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19444</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>737480</contig_pos>
        <strand></strand>
        <context>TTTGTAGCAT[C/T]CGGCAGACCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCTCACGAGCTGAAAAAAAAGGGAACTTTTTCGCCCAATTTTGTAGCAT</left_flank>
        <right_flank>CGGCAGACCTGTACCATCGTTCTTCCTGATGGTTCGACGTTGACGACGGC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGAACCTGACTTTGGCATCTTCTGTGAGAGAAGAGCCATCTTTGGTGATGATATCTTCATATCGATTCCACCATCCATCAAATGTCTTCTCTTCATCCGGATCGTACGAGAAATTCGGAATTCGAGTCGAAATAGATTCCACCAACTGACTCGTTCTAGTCGACACATTTGATGGCACAGAGGTAGGAGATGATGCTGGATTTTGTACGAATTGTCCAAAAGCTGTGATGAGGGAAGCCAGTTGTTGAGTCAGGTCTGCCATAGCCTTTGCCTGACCGCTAGTTTTGCCTGATCGCCAAAATAGAAAGGGTTAGTGAACCAGGGTAGTTCACGTCAATAATAATAATACATTCAACTTATAAGAATAGGCGTAGAATGTAACAACATCAAAAGTCAGTGTTCCACTTTGTACGATGTGTGACTTAGCTCTATATTAGGCTGACGACTATCCTCACGAGCTGAAAAAAAAGGGAACTTTTTCGCCCAATTTTGTAGCATCCGGCAGACCTGTACCATCGTTCTTCCTGATGGTTCGACGTTGACGACGGCTCTTCCAACAATGTAGATCTCATCGTTGTCCTCTCTGGTATCCTCCGAATTTCGACTCACATATGCTCAATATCAAACCGAACCCCCAAAAGTCTTCTTTAAGACTACAAATTTTTGATATGAAATCCAAATTTTTTTCAATTTGCAATAAAGTTATGACCCAATATGTTAATTGAGTCCAAATATCCTCTATTCTCAATTCCCGAAAATCCTGTCAACTGATAAAATGTTGCTGGTCTTATTCTTGATATTTTATCAGTTGACAGTTTCTTGGTATTTTTCATGGGAGCCAAGATAATTAAGGTCAAAGTGCAAGCACCACGCGAAAACCCAACATTTCACACTTTGAGCTCAATTATATCTCGGTTCCTATAAAAGATATCAAAAACTTGTTGACTGATTTTGCTGATATTATGCTTAACATTTTATCAATTAACCACTTTTTGATAT</canonical>
            <polymorphic>ACGAACCTGACTTTGGCATCTTCTGTGAGAGAAGAGCCATCTTTGGTGATGATATCTTCATATCGATTCCACCATCCATCAAATGTCTTCTCTTCATCCGGATCGTACGAGAAATTCGGAATTCGAGTCGAAATAGATTCCACCAACTGACTCGTTCTAGTCGACACATTTGATGGCACAGAGGTAGGAGATGATGCTGGATTTTGTACGAATTGTCCAAAAGCTGTGATGAGGGAAGCCAGTTGTTGAGTCAGGTCTGCCATAGCCTTTGCCTGACCGCTAGTTTTGCCTGATCGCCAAAATAGAAAGGGTTAGTGAACCAGGGTAGTTCACGTCAATAATAATAATACATTCAACTTATAAGAATAGGCGTAGAATGTAACAACATCAAAAGTCAGTGTTCCACTTTGTACGATGTGTGACTTAGCTCTATATTAGGCTGACGACTATCCTCACGAGCTGAAAAAAAAGGGAACTTTTTCGCCCAATTTTGTAGCATYCGGCAGACCTGTACCATCGTTCTTCCTGATGGTTCGACGTTGACGACGGCTCTTCCAACAATGTAGATCTCATCGTTGTCCTCTCTGGTATCCTCCGAATTTCGACTCACATATGCTCAATATCAAACCGAACCCCCAAAAGTCTTCTTTAAGACTACAAATTTTTGATATGAAATCCAAATTTTTTTCAATTTGCAATAAAGTTATGACCCAATATGTTAATTGAGTCCAAATATCCTCTATTCTCAATTCCCGAAAATCCTGTCAACTGATAAAATGTTGCTGGTCTTATTCTTGATATTTTATCAGTTGACAGTTTCTTGGTATTTTTCATGGGAGCCAAGATAATTAAGGTCAAAGTGCAAGCACCACGCGAAAACCCAACATTTCACACTTTGAGCTCAATTATATCTCGGTTCCTATAAAAGATATCAAAAACTTGTTGACTGATTTTGCTGATATTATGCTTAACATTTTATCAATTAACCACTTTTTGATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 402 98</canonical_bands>
                <polymorphic_bands>902 98</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGTCAGTGTTCCACTTTGTA</pcr_primer_p1>
		<pcr_primer_p2>TTGATATTGAGCATATGTGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>AAAAGTCAGTGTTCCACTTTGTACGATGTGTGACTTAGCTCTATATTAGGCTGACGACTATCCTCACGAGCTGAAAAAAAAGGGAACTTTTTCGCCCAATTTTGTAGCATCCGGCAGACCTGTACCATCGTTCTTCCTGATGGTTCGACGTTGACGACGGCTCTTCCAACAATGTAGATCTCATCGTTGTCCTCTCTGGTATCCTCCGAATTTCGACTCACATATGCTCAATATCAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAGTCAGTGTTCCACTTTGTACGATGTGTGACTTAGCTCTATATTAGGCTGACGACTATCCTCACGAGCTGAAAAAAAAGGGAACTTTTTCGCCCAATTTTGTAGCATYCGGCAGACCTGTACCATCGTTCTTCCTGATGGTTCGACGTTGACGACGGCTCTTCCAACAATGTAGATCTCATCGTTGTCCTCTCTGGTATCCTCCGAATTTCGACTCACATATGCTCAATATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19445</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>737465</contig_pos>
        <strand></strand>
        <context>ACTTTTTCGC[C/T]CAATTTTGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAGGCTGACGACTATCCTCACGAGCTGAAAAAAAAGGGAACTTTTTCGC</left_flank>
        <right_flank>CAATTTTGTAGCATCCGGCAGACCTGTACCATCGTTCTTCCTGATGGTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAGTTTTGATAGAACGAACCTGACTTTGGCATCTTCTGTGAGAGAAGAGCCATCTTTGGTGATGATATCTTCATATCGATTCCACCATCCATCAAATGTCTTCTCTTCATCCGGATCGTACGAGAAATTCGGAATTCGAGTCGAAATAGATTCCACCAACTGACTCGTTCTAGTCGACACATTTGATGGCACAGAGGTAGGAGATGATGCTGGATTTTGTACGAATTGTCCAAAAGCTGTGATGAGGGAAGCCAGTTGTTGAGTCAGGTCTGCCATAGCCTTTGCCTGACCGCTAGTTTTGCCTGATCGCCAAAATAGAAAGGGTTAGTGAACCAGGGTAGTTCACGTCAATAATAATAATACATTCAACTTATAAGAATAGGCGTAGAATGTAACAACATCAAAAGTCAGTGTTCCACTTTGTACGATGTGTGACTTAGCTCTATATTAGGCTGACGACTATCCTCACGAGCTGAAAAAAAAGGGAACTTTTTCGCCCAATTTTGTAGCATCCGGCAGACCTGTACCATCGTTCTTCCTGATGGTTCGACGTTGACGACGGCTCTTCCAACAATGTAGATCTCATCGTTGTCCTCTCTGGTATCCTCCGAATTTCGACTCACATATGCTCAATATCAAACCGAACCCCCAAAAGTCTTCTTTAAGACTACAAATTTTTGATATGAAATCCAAATTTTTTTCAATTTGCAATAAAGTTATGACCCAATATGTTAATTGAGTCCAAATATCCTCTATTCTCAATTCCCGAAAATCCTGTCAACTGATAAAATGTTGCTGGTCTTATTCTTGATATTTTATCAGTTGACAGTTTCTTGGTATTTTTCATGGGAGCCAAGATAATTAAGGTCAAAGTGCAAGCACCACGCGAAAACCCAACATTTCACACTTTGAGCTCAATTATATCTCGGTTCCTATAAAAGATATCAAAAACTTGTTGACTGATTTTGCTGATATTATGCTTAACATTTTATCAATTA</canonical>
            <polymorphic>TCTAGTTTTGATAGAACGAACCTGACTTTGGCATCTTCTGTGAGAGAAGAGCCATCTTTGGTGATGATATCTTCATATCGATTCCACCATCCATCAAATGTCTTCTCTTCATCCGGATCGTACGAGAAATTCGGAATTCGAGTCGAAATAGATTCCACCAACTGACTCGTTCTAGTCGACACATTTGATGGCACAGAGGTAGGAGATGATGCTGGATTTTGTACGAATTGTCCAAAAGCTGTGATGAGGGAAGCCAGTTGTTGAGTCAGGTCTGCCATAGCCTTTGCCTGACCGCTAGTTTTGCCTGATCGCCAAAATAGAAAGGGTTAGTGAACCAGGGTAGTTCACGTCAATAATAATAATACATTCAACTTATAAGAATAGGCGTAGAATGTAACAACATCAAAAGTCAGTGTTCCACTTTGTACGATGTGTGACTTAGCTCTATATTAGGCTGACGACTATCCTCACGAGCTGAAAAAAAAGGGAACTTTTTCGCYCAATTTTGTAGCATCCGGCAGACCTGTACCATCGTTCTTCCTGATGGTTCGACGTTGACGACGGCTCTTCCAACAATGTAGATCTCATCGTTGTCCTCTCTGGTATCCTCCGAATTTCGACTCACATATGCTCAATATCAAACCGAACCCCCAAAAGTCTTCTTTAAGACTACAAATTTTTGATATGAAATCCAAATTTTTTTCAATTTGCAATAAAGTTATGACCCAATATGTTAATTGAGTCCAAATATCCTCTATTCTCAATTCCCGAAAATCCTGTCAACTGATAAAATGTTGCTGGTCTTATTCTTGATATTTTATCAGTTGACAGTTTCTTGGTATTTTTCATGGGAGCCAAGATAATTAAGGTCAAAGTGCAAGCACCACGCGAAAACCCAACATTTCACACTTTGAGCTCAATTATATCTCGGTTCCTATAAAAGATATCAAAAACTTGTTGACTGATTTTGCTGATATTATGCTTAACATTTTATCAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGTCAGTGTTCCACTTTGTA</pcr_primer_p1>
		<pcr_primer_p2>TTGATATTGAGCATATGTGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>AAAAGTCAGTGTTCCACTTTGTACGATGTGTGACTTAGCTCTATATTAGGCTGACGACTATCCTCACGAGCTGAAAAAAAAGGGAACTTTTTCGCCCAATTTTGTAGCATCCGGCAGACCTGTACCATCGTTCTTCCTGATGGTTCGACGTTGACGACGGCTCTTCCAACAATGTAGATCTCATCGTTGTCCTCTCTGGTATCCTCCGAATTTCGACTCACATATGCTCAATATCAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAGTCAGTGTTCCACTTTGTACGATGTGTGACTTAGCTCTATATTAGGCTGACGACTATCCTCACGAGCTGAAAAAAAAGGGAACTTTTTCGCYCAATTTTGTAGCATCCGGCAGACCTGTACCATCGTTCTTCCTGATGGTTCGACGTTGACGACGGCTCTTCCAACAATGTAGATCTCATCGTTGTCCTCTCTGGTATCCTCCGAATTTCGACTCACATATGCTCAATATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19447</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>795839</contig_pos>
        <strand>+</strand>
        <context>TCCTCGGGAC[C/G]GGGAAAAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAAATTAGCATTCGGCCCATTTCGCCTCCCAACCTTTTCTTCCTCGGGAC</left_flank>
        <right_flank>GGGAAAAAGAGTGCATCTATTCTCTCCGCCGTTCCCATTTCTCCTTTTCC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAAAATTGCTTATTTTATTATTAGCTTTGTTGAAGTTCTTATTTTCCATGGCTTGCCATTTCACCATAAATAATCATGAGTAATAAAAAAGAAAGTCCACAGGGAGAACAATTAATCCGCCTCTTTCTTTTTTGAGAAATAATTTTTGGAATTTTAGCTCTTTGGTTTTTTTTTTCTGGATAAAAATGGAAGAAGGATATGTGCAGTTTGTTGTTTGAGGAATTTCTGAAAAATAAAGTTGAATGGTGGGGACTTGATCTTTAAAAGAAAACCTCAGGGAAAATTTTTGTAAAAGTCTGATCAGCTGATACCCCTTATCGTTTCACAAACTCTCCTAAATTCAAAAAATCTTCCACTTCCGGATTTTTCGTCATTTTTTTTCTTGAGCACATTAGTATTATCTCCCCTCCATGTGTGAAAAATGACTCTTTTCTTCCAACAACACAGGAAATTAGCATTCGGCCCATTTCGCCTCCCAACCTTTTCTTCCTCGGGACGGGGAAAAAGAGTGCATCTATTCTCTCCGCCGTTCCCATTTCTCCTTTTCCCAGCCAAATTAATTTATTTTGGATCAACAAGAGAAAGCGAGATCTTTCTTATTTTGTTTCCCGTTTTTCTTTCATTTTTGACCTTTTGGAATAGGTTTTGAAATTTCTATTTTTGGTGATTAGGAATCCTCAGAGATTAAAAAAAAGTCAAAATTCAAATTCCGTTCATGCTGTAATAGAAGCCCACCCTATACGTGCACTTTGAGCTTAATTATTTCGTTTTCTATAAGAGATATCAAAAACCTGTCAACTAATAAACGATTGATGATGTTATAATAACTAATTTATTAGTTGAAAAGTTTTTAATATCTCTTCAAGGAACCAAGATAATGGAGCTTAAAGTGCACGTATAAGGTGGGCTTTTATTAGAGCAAAATGTCCACTTTGAGACAATGTTTCATTGTTTCTATAAGAGGCCAGTCGATTTTCGCCGCCTGTCAATCTTTTGGC</canonical>
            <polymorphic>ATAAAAATTGCTTATTTTATTATTAGCTTTGTTGAAGTTCTTATTTTCCATGGCTTGCCATTTCACCATAAATAATCATGAGTAATAAAAAAGAAAGTCCACAGGGAGAACAATTAATCCGCCTCTTTCTTTTTTGAGAAATAATTTTTGGAATTTTAGCTCTTTGGTTTTTTTTTTCTGGATAAAAATGGAAGAAGGATATGTGCAGTTTGTTGTTTGAGGAATTTCTGAAAAATAAAGTTGAATGGTGGGGACTTGATCTTTAAAAGAAAACCTCAGGGAAAATTTTTGTAAAAGTCTGATCAGCTGATACCCCTTATCGTTTCACAAACTCTCCTAAATTCAAAAAATCTTCCACTTCCGGATTTTTCGTCATTTTTTTTCTTGAGCACATTAGTATTATCTCCCCTCCATGTGTGAAAAATGACTCTTTTCTTCCAACAACACAGGAAATTAGCATTCGGCCCATTTCGCCTCCCAACCTTTTCTTCCTCGGGACSGGGAAAAAGAGTGCATCTATTCTCTCCGCCGTTCCCATTTCTCCTTTTCCCAGCCAAATTAATTTATTTTGGATCAACAAGAGAAAGCGAGATCTTTCTTATTTTGTTTCCCGTTTTTCTTTCATTTTTGACCTTTTGGAATAGGTTTTGAAATTTCTATTTTTGGTGATTAGGAATCCTCAGAGATTAAAAAAAAGTCAAAATTCAAATTCCGTTCATGCTGTAATAGAAGCCCACCCTATACGTGCACTTTGAGCTTAATTATTTCGTTTTCTATAAGAGATATCAAAAACCTGTCAACTAATAAACGATTGATGATGTTATAATAACTAATTTATTAGTTGAAAAGTTTTTAATATCTCTTCAAGGAACCAAGATAATGGAGCTTAAAGTGCACGTATAAGGTGGGCTTTTATTAGAGCAAAATGTCCACTTTGAGACAATGTTTCATTGTTTCTATAAGAGGCCAGTCGATTTTCGCCGCCTGTCAATCTTTTGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCCATGTGTGAAAAATGACT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTCAAAACCTATTCCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTCCATGTGTGAAAAATGACTCTTTTCTTCCAACAACACAGGAAATTAGCATTCGGCCCATTTCGCCTCCCAACCTTTTCTTCCTCGGGACGGGGAAAAAGAGTGCATCTATTCTCTCCGCCGTTCCCATTTCTCCTTTTCCCAGCCAAATTAATTTATTTTGGATCAACAAGAGAAAGCGAGATCTTTCTTATTTTGTTTCCCGTTTTTCTTTCATTTTTGACCTTTTGGAATAGGTTTTGAAATTT</canonical_amplicon>
		<polymorphic_amplicon>CTCCATGTGTGAAAAATGACTCTTTTCTTCCAACAACACAGGAAATTAGCATTCGGCCCATTTCGCCTCCCAACCTTTTCTTCCTCGGGACSGGGAAAAAGAGTGCATCTATTCTCTCCGCCGTTCCCATTTCTCCTTTTCCCAGCCAAATTAATTTATTTTGGATCAACAAGAGAAAGCGAGATCTTTCTTATTTTGTTTCCCGTTTTTCTTTCATTTTTGACCTTTTGGAATAGGTTTTGAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19448</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>795854</contig_pos>
        <strand>+</strand>
        <context>AAAAGAGTGC[A/C]TCTATTCTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCCATTTCGCCTCCCAACCTTTTCTTCCTCGGGACGGGGAAAAAGAGTGC</left_flank>
        <right_flank>TCTATTCTCTCCGCCGTTCCCATTTCTCCTTTTCCCAGCCAAATTAATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTATTATTAGCTTTGTTGAAGTTCTTATTTTCCATGGCTTGCCATTTCACCATAAATAATCATGAGTAATAAAAAAGAAAGTCCACAGGGAGAACAATTAATCCGCCTCTTTCTTTTTTGAGAAATAATTTTTGGAATTTTAGCTCTTTGGTTTTTTTTTTCTGGATAAAAATGGAAGAAGGATATGTGCAGTTTGTTGTTTGAGGAATTTCTGAAAAATAAAGTTGAATGGTGGGGACTTGATCTTTAAAAGAAAACCTCAGGGAAAATTTTTGTAAAAGTCTGATCAGCTGATACCCCTTATCGTTTCACAAACTCTCCTAAATTCAAAAAATCTTCCACTTCCGGATTTTTCGTCATTTTTTTTCTTGAGCACATTAGTATTATCTCCCCTCCATGTGTGAAAAATGACTCTTTTCTTCCAACAACACAGGAAATTAGCATTCGGCCCATTTCGCCTCCCAACCTTTTCTTCCTCGGGACGGGGAAAAAGAGTGCATCTATTCTCTCCGCCGTTCCCATTTCTCCTTTTCCCAGCCAAATTAATTTATTTTGGATCAACAAGAGAAAGCGAGATCTTTCTTATTTTGTTTCCCGTTTTTCTTTCATTTTTGACCTTTTGGAATAGGTTTTGAAATTTCTATTTTTGGTGATTAGGAATCCTCAGAGATTAAAAAAAAGTCAAAATTCAAATTCCGTTCATGCTGTAATAGAAGCCCACCCTATACGTGCACTTTGAGCTTAATTATTTCGTTTTCTATAAGAGATATCAAAAACCTGTCAACTAATAAACGATTGATGATGTTATAATAACTAATTTATTAGTTGAAAAGTTTTTAATATCTCTTCAAGGAACCAAGATAATGGAGCTTAAAGTGCACGTATAAGGTGGGCTTTTATTAGAGCAAAATGTCCACTTTGAGACAATGTTTCATTGTTTCTATAAGAGGCCAGTCGATTTTCGCCGCCTGTCAATCTTTTGGCTTGCCTTAAAACGTT</canonical>
            <polymorphic>TTTATTATTAGCTTTGTTGAAGTTCTTATTTTCCATGGCTTGCCATTTCACCATAAATAATCATGAGTAATAAAAAAGAAAGTCCACAGGGAGAACAATTAATCCGCCTCTTTCTTTTTTGAGAAATAATTTTTGGAATTTTAGCTCTTTGGTTTTTTTTTTCTGGATAAAAATGGAAGAAGGATATGTGCAGTTTGTTGTTTGAGGAATTTCTGAAAAATAAAGTTGAATGGTGGGGACTTGATCTTTAAAAGAAAACCTCAGGGAAAATTTTTGTAAAAGTCTGATCAGCTGATACCCCTTATCGTTTCACAAACTCTCCTAAATTCAAAAAATCTTCCACTTCCGGATTTTTCGTCATTTTTTTTCTTGAGCACATTAGTATTATCTCCCCTCCATGTGTGAAAAATGACTCTTTTCTTCCAACAACACAGGAAATTAGCATTCGGCCCATTTCGCCTCCCAACCTTTTCTTCCTCGGGACGGGGAAAAAGAGTGCMTCTATTCTCTCCGCCGTTCCCATTTCTCCTTTTCCCAGCCAAATTAATTTATTTTGGATCAACAAGAGAAAGCGAGATCTTTCTTATTTTGTTTCCCGTTTTTCTTTCATTTTTGACCTTTTGGAATAGGTTTTGAAATTTCTATTTTTGGTGATTAGGAATCCTCAGAGATTAAAAAAAAGTCAAAATTCAAATTCCGTTCATGCTGTAATAGAAGCCCACCCTATACGTGCACTTTGAGCTTAATTATTTCGTTTTCTATAAGAGATATCAAAAACCTGTCAACTAATAAACGATTGATGATGTTATAATAACTAATTTATTAGTTGAAAAGTTTTTAATATCTCTTCAAGGAACCAAGATAATGGAGCTTAAAGTGCACGTATAAGGTGGGCTTTTATTAGAGCAAAATGTCCACTTTGAGACAATGTTTCATTGTTTCTATAAGAGGCCAGTCGATTTTCGCCGCCTGTCAATCTTTTGGCTTGCCTTAAAACGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>308 234 190 147 121</canonical_bands>
                <polymorphic_bands>542 190 147 121</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCCATGTGTGAAAAATGACT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTCAAAACCTATTCCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTCCATGTGTGAAAAATGACTCTTTTCTTCCAACAACACAGGAAATTAGCATTCGGCCCATTTCGCCTCCCAACCTTTTCTTCCTCGGGACGGGGAAAAAGAGTGCATCTATTCTCTCCGCCGTTCCCATTTCTCCTTTTCCCAGCCAAATTAATTTATTTTGGATCAACAAGAGAAAGCGAGATCTTTCTTATTTTGTTTCCCGTTTTTCTTTCATTTTTGACCTTTTGGAATAGGTTTTGAAATTT</canonical_amplicon>
		<polymorphic_amplicon>CTCCATGTGTGAAAAATGACTCTTTTCTTCCAACAACACAGGAAATTAGCATTCGGCCCATTTCGCCTCCCAACCTTTTCTTCCTCGGGACGGGGAAAAAGAGTGCMTCTATTCTCTCCGCCGTTCCCATTTCTCCTTTTCCCAGCCAAATTAATTTATTTTGGATCAACAAGAGAAAGCGAGATCTTTCTTATTTTGTTTCCCGTTTTTCTTTCATTTTTGACCTTTTGGAATAGGTTTTGAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19449</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>795964</contig_pos>
        <strand>+</strand>
        <context>TTTTCTTTCA[A/T]TTTTGACCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAACAAGAGAAAGCGAGATCTTTCTTATTTTGTTTCCCGTTTTTCTTTCA</left_flank>
        <right_flank>TTTTGACCTTTTGGAATAGGTTTTGAAATTTCTATTTTTGGTGATTAGGA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTTTTTTGAGAAATAATTTTTGGAATTTTAGCTCTTTGGTTTTTTTTTTCTGGATAAAAATGGAAGAAGGATATGTGCAGTTTGTTGTTTGAGGAATTTCTGAAAAATAAAGTTGAATGGTGGGGACTTGATCTTTAAAAGAAAACCTCAGGGAAAATTTTTGTAAAAGTCTGATCAGCTGATACCCCTTATCGTTTCACAAACTCTCCTAAATTCAAAAAATCTTCCACTTCCGGATTTTTCGTCATTTTTTTTCTTGAGCACATTAGTATTATCTCCCCTCCATGTGTGAAAAATGACTCTTTTCTTCCAACAACACAGGAAATTAGCATTCGGCCCATTTCGCCTCCCAACCTTTTCTTCCTCGGGACGGGGAAAAAGAGTGCATCTATTCTCTCCGCCGTTCCCATTTCTCCTTTTCCCAGCCAAATTAATTTATTTTGGATCAACAAGAGAAAGCGAGATCTTTCTTATTTTGTTTCCCGTTTTTCTTTCATTTTTGACCTTTTGGAATAGGTTTTGAAATTTCTATTTTTGGTGATTAGGAATCCTCAGAGATTAAAAAAAAGTCAAAATTCAAATTCCGTTCATGCTGTAATAGAAGCCCACCCTATACGTGCACTTTGAGCTTAATTATTTCGTTTTCTATAAGAGATATCAAAAACCTGTCAACTAATAAACGATTGATGATGTTATAATAACTAATTTATTAGTTGAAAAGTTTTTAATATCTCTTCAAGGAACCAAGATAATGGAGCTTAAAGTGCACGTATAAGGTGGGCTTTTATTAGAGCAAAATGTCCACTTTGAGACAATGTTTCATTGTTTCTATAAGAGGCCAGTCGATTTTCGCCGCCTGTCAATCTTTTGGCTTGCCTTAAAACGTTCGATATTTCTCAGTTTTTCCACCTATTGTTTTATTATTTTTAGGTCACCCAGATCCAGGTCACCCAGATACAGGTCACCCGGTCATGGTCACCCGGAACCAGGTCACCCT</canonical>
            <polymorphic>TTTCTTTTTTGAGAAATAATTTTTGGAATTTTAGCTCTTTGGTTTTTTTTTTCTGGATAAAAATGGAAGAAGGATATGTGCAGTTTGTTGTTTGAGGAATTTCTGAAAAATAAAGTTGAATGGTGGGGACTTGATCTTTAAAAGAAAACCTCAGGGAAAATTTTTGTAAAAGTCTGATCAGCTGATACCCCTTATCGTTTCACAAACTCTCCTAAATTCAAAAAATCTTCCACTTCCGGATTTTTCGTCATTTTTTTTCTTGAGCACATTAGTATTATCTCCCCTCCATGTGTGAAAAATGACTCTTTTCTTCCAACAACACAGGAAATTAGCATTCGGCCCATTTCGCCTCCCAACCTTTTCTTCCTCGGGACGGGGAAAAAGAGTGCATCTATTCTCTCCGCCGTTCCCATTTCTCCTTTTCCCAGCCAAATTAATTTATTTTGGATCAACAAGAGAAAGCGAGATCTTTCTTATTTTGTTTCCCGTTTTTCTTTCAWTTTTGACCTTTTGGAATAGGTTTTGAAATTTCTATTTTTGGTGATTAGGAATCCTCAGAGATTAAAAAAAAGTCAAAATTCAAATTCCGTTCATGCTGTAATAGAAGCCCACCCTATACGTGCACTTTGAGCTTAATTATTTCGTTTTCTATAAGAGATATCAAAAACCTGTCAACTAATAAACGATTGATGATGTTATAATAACTAATTTATTAGTTGAAAAGTTTTTAATATCTCTTCAAGGAACCAAGATAATGGAGCTTAAAGTGCACGTATAAGGTGGGCTTTTATTAGAGCAAAATGTCCACTTTGAGACAATGTTTCATTGTTTCTATAAGAGGCCAGTCGATTTTCGCCGCCTGTCAATCTTTTGGCTTGCCTTAAAACGTTCGATATTTCTCAGTTTTTCCACCTATTGTTTTATTATTTTTAGGTCACCCAGATCCAGGTCACCCAGATACAGGTCACCCGGTCATGGTCACCCGGAACCAGGTCACCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCAACAACACAGGAAATTA</pcr_primer_p1>
		<pcr_primer_p2>AATCTCTGAGGATTCCTAATCAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTCCAACAACACAGGAAATTAGCATTCGGCCCATTTCGCCTCCCAACCTTTTCTTCCTCGGGACGGGGAAAAAGAGTGCATCTATTCTCTCCGCCGTTCCCATTTCTCCTTTTCCCAGCCAAATTAATTTATTTTGGATCAACAAGAGAAAGCGAGATCTTTCTTATTTTGTTTCCCGTTTTTCTTTCATTTTTGACCTTTTGGAATAGGTTTTGAAATTTCTATTTTTGGTGATTAGGAATCCTCAGAGATT</canonical_amplicon>
		<polymorphic_amplicon>TTCCAACAACACAGGAAATTAGCATTCGGCCCATTTCGCCTCCCAACCTTTTCTTCCTCGGGACGGGGAAAAAGAGTGCATCTATTCTCTCCGCCGTTCCCATTTCTCCTTTTCCCAGCCAAATTAATTTATTTTGGATCAACAAGAGAAAGCGAGATCTTTCTTATTTTGTTTCCCGTTTTTCTTTCAWTTTTGACCTTTTGGAATAGGTTTTGAAATTTCTATTTTTGGTGATTAGGAATCCTCAGAGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19450</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>796003</contig_pos>
        <strand>+</strand>
        <context>TTTCTATTTT[C/T]GGTGATTAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTCTTTCATTTTTGACCTTTTGGAATAGGTTTTGAAATTTCTATTTT</left_flank>
        <right_flank>GGTGATTAGGAATCCTCAGAGATTAAAAAAAAGTCAAAATTCAAATTCCG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTTTTTTTTTTCTGGATAAAAATGGAAGAAGGATATGTGCAGTTTGTTGTTTGAGGAATTTCTGAAAAATAAAGTTGAATGGTGGGGACTTGATCTTTAAAAGAAAACCTCAGGGAAAATTTTTGTAAAAGTCTGATCAGCTGATACCCCTTATCGTTTCACAAACTCTCCTAAATTCAAAAAATCTTCCACTTCCGGATTTTTCGTCATTTTTTTTCTTGAGCACATTAGTATTATCTCCCCTCCATGTGTGAAAAATGACTCTTTTCTTCCAACAACACAGGAAATTAGCATTCGGCCCATTTCGCCTCCCAACCTTTTCTTCCTCGGGACGGGGAAAAAGAGTGCATCTATTCTCTCCGCCGTTCCCATTTCTCCTTTTCCCAGCCAAATTAATTTATTTTGGATCAACAAGAGAAAGCGAGATCTTTCTTATTTTGTTTCCCGTTTTTCTTTCATTTTTGACCTTTTGGAATAGGTTTTGAAATTTCTATTTTTGGTGATTAGGAATCCTCAGAGATTAAAAAAAAGTCAAAATTCAAATTCCGTTCATGCTGTAATAGAAGCCCACCCTATACGTGCACTTTGAGCTTAATTATTTCGTTTTCTATAAGAGATATCAAAAACCTGTCAACTAATAAACGATTGATGATGTTATAATAACTAATTTATTAGTTGAAAAGTTTTTAATATCTCTTCAAGGAACCAAGATAATGGAGCTTAAAGTGCACGTATAAGGTGGGCTTTTATTAGAGCAAAATGTCCACTTTGAGACAATGTTTCATTGTTTCTATAAGAGGCCAGTCGATTTTCGCCGCCTGTCAATCTTTTGGCTTGCCTTAAAACGTTCGATATTTCTCAGTTTTTCCACCTATTGTTTTATTATTTTTAGGTCACCCAGATCCAGGTCACCCAGATACAGGTCACCCGGTCATGGTCACCCGGAACCAGGTCACCCTGTTCCAGGTCACCCGGTCAAGTTCACCCGAAACCAGGTC</canonical>
            <polymorphic>TGGTTTTTTTTTTCTGGATAAAAATGGAAGAAGGATATGTGCAGTTTGTTGTTTGAGGAATTTCTGAAAAATAAAGTTGAATGGTGGGGACTTGATCTTTAAAAGAAAACCTCAGGGAAAATTTTTGTAAAAGTCTGATCAGCTGATACCCCTTATCGTTTCACAAACTCTCCTAAATTCAAAAAATCTTCCACTTCCGGATTTTTCGTCATTTTTTTTCTTGAGCACATTAGTATTATCTCCCCTCCATGTGTGAAAAATGACTCTTTTCTTCCAACAACACAGGAAATTAGCATTCGGCCCATTTCGCCTCCCAACCTTTTCTTCCTCGGGACGGGGAAAAAGAGTGCATCTATTCTCTCCGCCGTTCCCATTTCTCCTTTTCCCAGCCAAATTAATTTATTTTGGATCAACAAGAGAAAGCGAGATCTTTCTTATTTTGTTTCCCGTTTTTCTTTCATTTTTGACCTTTTGGAATAGGTTTTGAAATTTCTATTTTYGGTGATTAGGAATCCTCAGAGATTAAAAAAAAGTCAAAATTCAAATTCCGTTCATGCTGTAATAGAAGCCCACCCTATACGTGCACTTTGAGCTTAATTATTTCGTTTTCTATAAGAGATATCAAAAACCTGTCAACTAATAAACGATTGATGATGTTATAATAACTAATTTATTAGTTGAAAAGTTTTTAATATCTCTTCAAGGAACCAAGATAATGGAGCTTAAAGTGCACGTATAAGGTGGGCTTTTATTAGAGCAAAATGTCCACTTTGAGACAATGTTTCATTGTTTCTATAAGAGGCCAGTCGATTTTCGCCGCCTGTCAATCTTTTGGCTTGCCTTAAAACGTTCGATATTTCTCAGTTTTTCCACCTATTGTTTTATTATTTTTAGGTCACCCAGATCCAGGTCACCCAGATACAGGTCACCCGGTCATGGTCACCCGGAACCAGGTCACCCTGTTCCAGGTCACCCGGTCAAGTTCACCCGAAACCAGGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTGTTTCCCGTTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>AACATTGTCTCAAAGTGGACAT</pcr_primer_p2>
		<pcr_amplicon_size>348</pcr_amplicon_size>
		<canonical_amplicon>TATTTTGTTTCCCGTTTTTCTTTCATTTTTGACCTTTTGGAATAGGTTTTGAAATTTCTATTTTTGGTGATTAGGAATCCTCAGAGATTAAAAAAAAGTCAAAATTCAAATTCCGTTCATGCTGTAATAGAAGCCCACCCTATACGTGCACTTTGAGCTTAATTATTTCGTTTTCTATAAGAGATATCAAAAACCTGTCAACTAATAAACGATTGATGATGTTATAATAACTAATTTATTAGTTGAAAAGTTTTTAATATCTCTTCAAGGAACCAAGATAATGGAGCTTAAAGTGCACGTATAAGGTGGGCTTTTATTAGAGCAAAATGTCCACTTTGAGACAATGTT</canonical_amplicon>
		<polymorphic_amplicon>TATTTTGTTTCCCGTTTTTCTTTCATTTTTGACCTTTTGGAATAGGTTTTGAAATTTCTATTTTYGGTGATTAGGAATCCTCAGAGATTAAAAAAAAGTCAAAATTCAAATTCCGTTCATGCTGTAATAGAAGCCCACCCTATACGTGCACTTTGAGCTTAATTATTTCGTTTTCTATAAGAGATATCAAAAACCTGTCAACTAATAAACGATTGATGATGTTATAATAACTAATTTATTAGTTGAAAAGTTTTTAATATCTCTTCAAGGAACCAAGATAATGGAGCTTAAAGTGCACGTATAAGGTGGGCTTTTATTAGAGCAAAATGTCCACTTTGAGACAATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19451</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>796040</contig_pos>
        <strand></strand>
        <context>AAAAAAGTCA[A/C]AATTCAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATTTCTATTTTTGGTGATTAGGAATCCTCAGAGATTAAAAAAAAGTCA</left_flank>
        <right_flank>AATTCAAATTCCGTTCATGCTGTAATAGAAGCCCACCCTATACGTGCACT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGCAGTTTGTTGTTTGAGGAATTTCTGAAAAATAAAGTTGAATGGTGGGGACTTGATCTTTAAAAGAAAACCTCAGGGAAAATTTTTGTAAAAGTCTGATCAGCTGATACCCCTTATCGTTTCACAAACTCTCCTAAATTCAAAAAATCTTCCACTTCCGGATTTTTCGTCATTTTTTTTCTTGAGCACATTAGTATTATCTCCCCTCCATGTGTGAAAAATGACTCTTTTCTTCCAACAACACAGGAAATTAGCATTCGGCCCATTTCGCCTCCCAACCTTTTCTTCCTCGGGACGGGGAAAAAGAGTGCATCTATTCTCTCCGCCGTTCCCATTTCTCCTTTTCCCAGCCAAATTAATTTATTTTGGATCAACAAGAGAAAGCGAGATCTTTCTTATTTTGTTTCCCGTTTTTCTTTCATTTTTGACCTTTTGGAATAGGTTTTGAAATTTCTATTTTTGGTGATTAGGAATCCTCAGAGATTAAAAAAAAGTCAAAATTCAAATTCCGTTCATGCTGTAATAGAAGCCCACCCTATACGTGCACTTTGAGCTTAATTATTTCGTTTTCTATAAGAGATATCAAAAACCTGTCAACTAATAAACGATTGATGATGTTATAATAACTAATTTATTAGTTGAAAAGTTTTTAATATCTCTTCAAGGAACCAAGATAATGGAGCTTAAAGTGCACGTATAAGGTGGGCTTTTATTAGAGCAAAATGTCCACTTTGAGACAATGTTTCATTGTTTCTATAAGAGGCCAGTCGATTTTCGCCGCCTGTCAATCTTTTGGCTTGCCTTAAAACGTTCGATATTTCTCAGTTTTTCCACCTATTGTTTTATTATTTTTAGGTCACCCAGATCCAGGTCACCCAGATACAGGTCACCCGGTCATGGTCACCCGGAACCAGGTCACCCTGTTCCAGGTCACCCGGTCAAGTTCACCCGAAACCAGGTCACCCGGTCAGGGTCACCCGGAACCAGATCACCCAGTC</canonical>
            <polymorphic>TGTGCAGTTTGTTGTTTGAGGAATTTCTGAAAAATAAAGTTGAATGGTGGGGACTTGATCTTTAAAAGAAAACCTCAGGGAAAATTTTTGTAAAAGTCTGATCAGCTGATACCCCTTATCGTTTCACAAACTCTCCTAAATTCAAAAAATCTTCCACTTCCGGATTTTTCGTCATTTTTTTTCTTGAGCACATTAGTATTATCTCCCCTCCATGTGTGAAAAATGACTCTTTTCTTCCAACAACACAGGAAATTAGCATTCGGCCCATTTCGCCTCCCAACCTTTTCTTCCTCGGGACGGGGAAAAAGAGTGCATCTATTCTCTCCGCCGTTCCCATTTCTCCTTTTCCCAGCCAAATTAATTTATTTTGGATCAACAAGAGAAAGCGAGATCTTTCTTATTTTGTTTCCCGTTTTTCTTTCATTTTTGACCTTTTGGAATAGGTTTTGAAATTTCTATTTTTGGTGATTAGGAATCCTCAGAGATTAAAAAAAAGTCAMAATTCAAATTCCGTTCATGCTGTAATAGAAGCCCACCCTATACGTGCACTTTGAGCTTAATTATTTCGTTTTCTATAAGAGATATCAAAAACCTGTCAACTAATAAACGATTGATGATGTTATAATAACTAATTTATTAGTTGAAAAGTTTTTAATATCTCTTCAAGGAACCAAGATAATGGAGCTTAAAGTGCACGTATAAGGTGGGCTTTTATTAGAGCAAAATGTCCACTTTGAGACAATGTTTCATTGTTTCTATAAGAGGCCAGTCGATTTTCGCCGCCTGTCAATCTTTTGGCTTGCCTTAAAACGTTCGATATTTCTCAGTTTTTCCACCTATTGTTTTATTATTTTTAGGTCACCCAGATCCAGGTCACCCAGATACAGGTCACCCGGTCATGGTCACCCGGAACCAGGTCACCCTGTTCCAGGTCACCCGGTCAAGTTCACCCGAAACCAGGTCACCCGGTCAGGGTCACCCGGAACCAGATCACCCAGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>494 312 61 56 50 21 6</canonical_bands>
                <polymorphic_bands>494 312 61 56 56 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTTGGAATAGGTTTTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>AACATTGTCTCAAAGTGGACAT</pcr_primer_p2>
		<pcr_amplicon_size>315</pcr_amplicon_size>
		<canonical_amplicon>CTTTTGGAATAGGTTTTGAAATTTCTATTTTTGGTGATTAGGAATCCTCAGAGATTAAAAAAAAGTCAAAATTCAAATTCCGTTCATGCTGTAATAGAAGCCCACCCTATACGTGCACTTTGAGCTTAATTATTTCGTTTTCTATAAGAGATATCAAAAACCTGTCAACTAATAAACGATTGATGATGTTATAATAACTAATTTATTAGTTGAAAAGTTTTTAATATCTCTTCAAGGAACCAAGATAATGGAGCTTAAAGTGCACGTATAAGGTGGGCTTTTATTAGAGCAAAATGTCCACTTTGAGACAATGTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTGGAATAGGTTTTGAAATTTCTATTTTTGGTGATTAGGAATCCTCAGAGATTAAAAAAAAGTCAMAATTCAAATTCCGTTCATGCTGTAATAGAAGCCCACCCTATACGTGCACTTTGAGCTTAATTATTTCGTTTTCTATAAGAGATATCAAAAACCTGTCAACTAATAAACGATTGATGATGTTATAATAACTAATTTATTAGTTGAAAAGTTTTTAATATCTCTTCAAGGAACCAAGATAATGGAGCTTAAAGTGCACGTATAAGGTGGGCTTTTATTAGAGCAAAATGTCCACTTTGAGACAATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19452</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>799154</contig_pos>
        <strand>+</strand>
        <context>AACCTACAAA[A/T]ATTTTTTCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGATGTTGAAAAAGAATATCGAGATTTGAACTTTTTTGAGAACCTACAAA</left_flank>
        <right_flank>ATTTTTTCATTCATTTTTTTTTCTTTTTTTTTTTGAATTTTTCGAAACGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTTTCTGATGACTCTACTGCCTGTCAACGATTCAGTGGCTCGTCAGAATGTATTGAAGGTTTTATGATGGATCAATGTGGATTCGAATCAGTGGAAGGGTTCGAAGATTCTTTGACCTATTTATTGGAAATGTGGGATTGCTAATCTTTATTAATCATTCGGTAGTTTTATTGAACTGTGTAAAATAAATATTGGATTCCATTGTGGCATCATTATAAATCATTTGTTCTCCAAATGTCGATTTTGGCTCCTCCTCCACATGAGCTCTCCCAATGCACAAGAATATCAATCTCCTTGTTTCTTTCTGCCATTCAGGTAATGCAGAGTACAGAATAATTGGTACAGTAATCCCATAGGCAAGACAGAAAAAGTTGAAACAAATATATGACCAATAGATGATCATCATATCGATTTTGAAATGATCCATGAGAAGGATAGAACAGCATCCGATGTTGAAAAAGAATATCGAGATTTGAACTTTTTTGAGAACCTACAAATATTTTTTCATTCATTTTTTTTTCTTTTTTTTTTTGAATTTTTCGAAACGACTTACATTACACATTTTGATATTTTCGGCTAATTGAAATCTCTCGCTCAATCCATAGGAAACTTTTGAGAAACACTTTGAGCTATAAAACTTCTGATGCTTCTTGGTATTGTACGATGAGCAATAGTGAATTCCAATGTAGCCGATGACATTGACAATGAAAAATGAGATGACGTGGAAGACTACTGGCAACCAGCCTGAATAAGAATTATTGGGTGAGGAGGTTACTGTATGTCTCCTCTTACAATGGATATAAGCAATAGCTGATGTGAAAACCAAGGGATGAAAGATGGAGAGAATTAGAAGAGATGCCCAGATGTTTCTTGATTTTTCATAGTTTTTCACTAGAAATGTCGCCAAACATCGTTCAATCATAAAAATAGGGAGGATGTACATTGCAATGAATAAGCCAATCGTTCGGAGATAATTGGCAATTATGATGACTTGATGG</canonical>
            <polymorphic>AACTTTCTGATGACTCTACTGCCTGTCAACGATTCAGTGGCTCGTCAGAATGTATTGAAGGTTTTATGATGGATCAATGTGGATTCGAATCAGTGGAAGGGTTCGAAGATTCTTTGACCTATTTATTGGAAATGTGGGATTGCTAATCTTTATTAATCATTCGGTAGTTTTATTGAACTGTGTAAAATAAATATTGGATTCCATTGTGGCATCATTATAAATCATTTGTTCTCCAAATGTCGATTTTGGCTCCTCCTCCACATGAGCTCTCCCAATGCACAAGAATATCAATCTCCTTGTTTCTTTCTGCCATTCAGGTAATGCAGAGTACAGAATAATTGGTACAGTAATCCCATAGGCAAGACAGAAAAAGTTGAAACAAATATATGACCAATAGATGATCATCATATCGATTTTGAAATGATCCATGAGAAGGATAGAACAGCATCCGATGTTGAAAAAGAATATCGAGATTTGAACTTTTTTGAGAACCTACAAAWATTTTTTCATTCATTTTTTTTTCTTTTTTTTTTTGAATTTTTCGAAACGACTTACATTACACATTTTGATATTTTCGGCTAATTGAAATCTCTCGCTCAATCCATAGGAAACTTTTGAGAAACACTTTGAGCTATAAAACTTCTGATGCTTCTTGGTATTGTACGATGAGCAATAGTGAATTCCAATGTAGCCGATGACATTGACAATGAAAAATGAGATGACGTGGAAGACTACTGGCAACCAGCCTGAATAAGAATTATTGGGTGAGGAGGTTACTGTATGTCTCCTCTTACAATGGATATAAGCAATAGCTGATGTGAAAACCAAGGGATGAAAGATGGAGAGAATTAGAAGAGATGCCCAGATGTTTCTTGATTTTTCATAGTTTTTCACTAGAAATGTCGCCAAACATCGTTCAATCATAAAAATAGGGAGGATGTACATTGCAATGAATAAGCCAATCGTTCGGAGATAATTGGCAATTATGATGACTTGATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 308 192</canonical_bands>
                <polymorphic_bands>808 192</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCAGGTAATGCAGAGTACAGA</pcr_primer_p1>
		<pcr_primer_p2>TAATGTAAGTCGTTTCGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTCAGGTAATGCAGAGTACAGAATAATTGGTACAGTAATCCCATAGGCAAGACAGAAAAAGTTGAAACAAATATATGACCAATAGATGATCATCATATCGATTTTGAAATGATCCATGAGAAGGATAGAACAGCATCCGATGTTGAAAAAGAATATCGAGATTTGAACTTTTTTGAGAACCTACAAATATTTTTTCATTCATTTTTTTTTCTTTTTTTTTTTGAATTTTTCGAAACGACTTACATTA</canonical_amplicon>
		<polymorphic_amplicon>ATTCAGGTAATGCAGAGTACAGAATAATTGGTACAGTAATCCCATAGGCAAGACAGAAAAAGTTGAAACAAATATATGACCAATAGATGATCATCATATCGATTTTGAAATGATCCATGAGAAGGATAGAACAGCATCCGATGTTGAAAAAGAATATCGAGATTTGAACTTTTTTGAGAACCTACAAAWATTTTTTCATTCATTTTTTTTTCTTTTTTTTTTTGAATTTTTCGAAACGACTTACATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19453</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>798774</contig_pos>
        <strand>+</strand>
        <context>TTCTTTGAMC[A/T]ATTTATTGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGGATCAATGTGGATTCGAATCAGTGGAAGGGTTCGAAGATTCTTTGACC</left_flank>
        <right_flank>ATTTATTGGAAATGTGGGATTGCTAATCTTTATTAATCATTCGGTAGTTT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACCAACGCAGGACGGATGTGGAATTTATGAGAAAATACTATCGTTAGACTGTCAGGATTCTATGGAAGATTTTAGAGAGTCTGTAGTAAGGTTAAAACTTGGAAATCAGACAAAAGATGATTATTTGGAAGTTGCAAAACTTTGTGATGAAATGCAGGTGAGTGAACTTTTAAAATCTACTGTAAACTTCTTATTTCCAGAATTGCATAAATAATTTGACTACAAGCTGTGCAATCTCTTTAGAATTTAAAAGAAAAACTAAGGAATATTGTGAAAAAATGCATTTCTTGGCATCCCCATTCTGGCAATGCATCCAAAGATTGAAAACCGAAAATGTGAAACCGGATCTAATGAAATATGTATGCCTCATCGGACACGAACTTTCTGATGACTCTACTGCCTGTCAACGATTCAGTGGCTCGTCAGAATGTATTGAAGGTTTTATGATGGATCAATGTGGATTCGAATCAGTGGAAGGGTTCGAAGATTCTTTGACCTATTTATTGGAAATGTGGGATTGCTAATCTTTATTAATCATTCGGTAGTTTTATTGAACTGTGTAAAATAAATATTGGATTCCATTGTGGCATCATTATAAATCATTTGTTCTCCAAATGTCGATTTTGGCTCCTCCTCCACATGAGCTCTCCCAATGCACAAGAATATCAATCTCCTTGTTTCTTTCTGCCATTCAGGTAATGCAGAGTACAGAATAATTGGTACAGTAATCCCATAGGCAAGACAGAAAAAGTTGAAACAAATATATGACCAATAGATGATCATCATATCGATTTTGAAATGATCCATGAGAAGGATAGAACAGCATCCGATGTTGAAAAAGAATATCGAGATTTGAACTTTTTTGAGAACCTACAAATATTTTTTCATTCATTTTTTTTTCTTTTTTTTTTTGAATTTTTCGAAACGACTTACATTACACATTTTGATATTTTCGGCTAATTGAAATCTCTCGCTCAATCCATAGGAAACTTTTGAGA</canonical>
            <polymorphic>ACACCAACGCAGGACGGATGTGGAATTTATGAGAAAATACTATCGTTAGACTGTCAGGATTCTATGGAAGATTTTAGAGAGTCTGTAGTAAGGTTAAAACTTGGAAATCAGACAAAAGATGATTATTTGGAAGTTGCAAAACTTTGTGATGAAATGCAGGTGAGTGAACTTTTAAAATCTACTGTAAACTTCTTATTTCCAGAATTGCATAAATAATTTGACTACAAGCTGTGCAATCTCTTTAGAATTTAAAAGAAAAACTAAGGAATATTGTGAAAAAATGCATTTCTTGGCATCCCCATTCTGGCAATGCATCCAAAGATTGAAAACCGAAAATGTGAAACCGGATCTAATGAAATATGTATGCCTCATCGGACACGAACTTTCTGATGACTCTACTGCCTGTCAACGATTCAGTGGCTCGTCAGAATGTATTGAAGGTTTTATGATGGATCAATGTGGATTCGAATCAGTGGAAGGGTTCGAAGATTCTTTGACCWATTTATTGGAAATGTGGGATTGCTAATCTTTATTAATCATTCGGTAGTTTTATTGAACTGTGTAAAATAAATATTGGATTCCATTGTGGCATCATTATAAATCATTTGTTCTCCAAATGTCGATTTTGGCTCCTCCTCCACATGAGCTCTCCCAATGCACAAGAATATCAATCTCCTTGTTTCTTTCTGCCATTCAGGTAATGCAGAGTACAGAATAATTGGTACAGTAATCCCATAGGCAAGACAGAAAAAGTTGAAACAAATATATGACCAATAGATGATCATCATATCGATTTTGAAATGATCCATGAGAAGGATAGAACAGCATCCGATGTTGAAAAAGAATATCGAGATTTGAACTTTTTTGAGAACCTACAAATATTTTTTCATTCATTTTTTTTTCTTTTTTTTTTTGAATTTTTCGAAACGACTTACATTACACATTTTGATATTTTCGGCTAATTGAAATCTCTCGCTCAATCCATAGGAAACTTTTGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGTTTTATGATGGATCAATGT</pcr_primer_p1>
		<pcr_primer_p2>GAAAGAAACAAGGAGATTGATATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGGTTTTATGATGGATCAATGTGGATTCGAATCAGTGGAAGGGTTCGAAGATTCTTTGACCTATTTATTGGAAATGTGGGATTGCTAATCTTTATTAATCATTCGGTAGTTTTATTGAACTGTGTAAAATAAATATTGGATTCCATTGTGGCATCATTATAAATCATTTGTTCTCCAAATGTCGATTTTGGCTCCTCCTCCACATGAGCTCTCCCAATGCACAAGAATATCAATCTCCTTGTTTCTTTC</canonical_amplicon>
		<polymorphic_amplicon>AGGTTTTATGATGGATCAATGTGGATTCGAATCAGTGGAAGGGTTCGAAGATTCTTTGACCWATTTATTGGAAATGTGGGATTGCTAATCTTTATTAATCATTCGGTAGTTTTATTGAACTGTGTAAAATAAATATTGGATTCCATTGTGGCATCATTATAAATCATTTGTTCTCCAAATGTCGATTTTGGCTCCTCCTCCACATGAGCTCTCCCAATGCACAAGAATATCAATCTCCTTGTTTCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19472</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>861690</contig_pos>
        <strand>+</strand>
        <context>TCAATCTCAC[A/T]GGAGTTAATG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAATGGTCACATTCCTGGGAAGAACAACTCGCTTTGGTTCTCAATCTCAC</left_flank>
        <right_flank>GGAGTTAATGCAGTGATTCTTGAAATGGCTGTAACTCACGATCCATCAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCAGTTGATCGATCGGCTAAGAATCACAACGACGTCGTGTGCACCTCACGAGAGTGTGTAAGACTCGCCGGCTTTCTCGCTGAAAATCTGAATGCCAAAGTTTGCAATCCTCCTTTTTCCATTTACTAAATGAACCAAGTTTCAGATAAACCCTTGCGAAGACTTTTACGAATTCGCTTGCGGAAACTACGGTCTAAATAAGAATCTCCCAGCCAACAAACCACTTCGTCATACTATCAGTGATGTGCAATCACGACTGAACAAACAGGTCAAATCAATGCTTCAATCTCCGATTTCACAAAACGATAAGCCTTGGGATAAACTTGCAAAGGGTTACTATCAAAAGTGTTTGGACGAGGATGAGCTGGAATCGACTGGAGTGGAAGCAATGAGAGATATTGCCAAAAGGATTGGAGGTTGGCCAACTCTAGAAGGTGATAAATGGCAAGAATGGTCACATTCCTGGGAAGAACAACTCGCTTTGGTTCTCAATCTCACTGGAGTTAATGCAGTGATTCTTGAAATGGCTGTAACTCACGATCCATCAAACTCAAGTCGAAGTGTCATTGAATTGGATCAACCAAAGTGGGGAGCTGGTTCTCGATACCCCTATTTGAGTGGCGCCAATGATCCGATGCTCAGGAACTATACAACACTGATGAAACTGACTGCAGTGGCGTTGGGAGCTGATCCAGCAGTAGCTGAGAAGGATATGAATGAGGCAATGGAGTTTGAACTGAAATTAGTGAACTTCTCAGCTGATGATATGGTTCGGAGGGATCCCGAACGTGGGAATAATCGATTCGAGTTGTATCAGTTGAAGAAAATGTTTCCATTTGTAAGATAATTTAGTAAGACAGTTTTCAGTGATGGATAATTTCAGATAAACTTCGAAAAGTACCTAAAAACAGTGTTCAAGGAGCTGGTCGACGTCTCTCCAAATCATACAGTAATCGTCAGAGAGATTGATTATTTTCAGGGAATTCAGGTACGTCCTTT</canonical>
            <polymorphic>GGCAGTTGATCGATCGGCTAAGAATCACAACGACGTCGTGTGCACCTCACGAGAGTGTGTAAGACTCGCCGGCTTTCTCGCTGAAAATCTGAATGCCAAAGTTTGCAATCCTCCTTTTTCCATTTACTAAATGAACCAAGTTTCAGATAAACCCTTGCGAAGACTTTTACGAATTCGCTTGCGGAAACTACGGTCTAAATAAGAATCTCCCAGCCAACAAACCACTTCGTCATACTATCAGTGATGTGCAATCACGACTGAACAAACAGGTCAAATCAATGCTTCAATCTCCGATTTCACAAAACGATAAGCCTTGGGATAAACTTGCAAAGGGTTACTATCAAAAGTGTTTGGACGAGGATGAGCTGGAATCGACTGGAGTGGAAGCAATGAGAGATATTGCCAAAAGGATTGGAGGTTGGCCAACTCTAGAAGGTGATAAATGGCAAGAATGGTCACATTCCTGGGAAGAACAACTCGCTTTGGTTCTCAATCTCACWGGAGTTAATGCAGTGATTCTTGAAATGGCTGTAACTCACGATCCATCAAACTCAAGTCGAAGTGTCATTGAATTGGATCAACCAAAGTGGGGAGCTGGTTCTCGATACCCCTATTTGAGTGGCGCCAATGATCCGATGCTCAGGAACTATACAACACTGATGAAACTGACTGCAGTGGCGTTGGGAGCTGATCCAGCAGTAGCTGAGAAGGATATGAATGAGGCAATGGAGTTTGAACTGAAATTAGTGAACTTCTCAGCTGATGATATGGTTCGGAGGGATCCCGAACGTGGGAATAATCGATTCGAGTTGTATCAGTTGAAGAAAATGTTTCCATTTGTAAGATAATTTAGTAAGACAGTTTTCAGTGATGGATAATTTCAGATAAACTTCGAAAAGTACCTAAAAACAGTGTTCAAGGAGCTGGTCGACGTCTCTCCAAATCATACAGTAATCGTCAGAGAGATTGATTATTTTCAGGGAATTCAGGTACGTCCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAACTCTAGAAGGTGATAAATG</pcr_primer_p1>
		<pcr_primer_p2>CAGTCAGTTTCATCAGTGTTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAACTCTAGAAGGTGATAAATGGCAAGAATGGTCACATTCCTGGGAAGAACAACTCGCTTTGGTTCTCAATCTCACTGGAGTTAATGCAGTGATTCTTGAAATGGCTGTAACTCACGATCCATCAAACTCAAGTCGAAGTGTCATTGAATTGGATCAACCAAAGTGGGGAGCTGGTTCTCGATACCCCTATTTGAGTGGCGCCAATGATCCGATGCTCAGGAACTATACAACACTGATGAAACTGACTG</canonical_amplicon>
		<polymorphic_amplicon>CCAACTCTAGAAGGTGATAAATGGCAAGAATGGTCACATTCCTGGGAAGAACAACTCGCTTTGGTTCTCAATCTCACWGGAGTTAATGCAGTGATTCTTGAAATGGCTGTAACTCACGATCCATCAAACTCAAGTCGAAGTGTCATTGAATTGGATCAACCAAAGTGGGGAGCTGGTTCTCGATACCCCTATTTGAGTGGCGCCAATGATCCGATGCTCAGGAACTATACAACACTGATGAAACTGACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19473</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>864870</contig_pos>
        <strand>+</strand>
        <context>ATAAAAGTAA[A/T]TCGGTCACAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATAAGCTCCAATGATCCTTCTATGATTCTTCAAAGGGTATAAAAGTAA</left_flank>
        <right_flank>TCGGTCACATTGAACCATTTATAGTAAAATCGATATGGTCTCCAATATAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATGCTGAGACAGAAGAGAAGTTCATCGAGAAAACAAGGTACCCGCTTCATTTTCTTCTTCTTCTTCTTAAAATTCGAAAAATTTGTTTCAGATGTTTCGTCCGTCAATACGAGAATGTACATGTTGTAGAAGCGGATATTCATCTGAATGGTCAACTGAGTCTTGGAGAGAATATTGCGGATAATGGAGGTGTCAAGACAGCCTTCAATGTGGGTTTTGTAGAAATTGGCGCCAGAAAAAAGTTTCGTTTAGGCGTACAAGGCGTGGAAGTCAAACACAACAGGGATCAGTGAGCCAGCGTTGCCTGGCTTCCAGAACTTTACCAGCCAGCAGATGTTCTTCTTGGCGTATGCTAATGTAAGTTTCCTAGAAATTGGATTTTCCAGTTCATCGCTGAAACATTTTAAACTTTACCTTGCGAAAAATTCTAACGTTTCTGAACTATGAAAATAAGCTCCAATGATCCTTCTATGATTCTTCAAAGGGTATAAAAGTAAATCGGTCACATTGAACCATTTATAGTAAAATCGATATGGTCTCCAATATATTGCATAGTGACGCGAGAAACCCGTGAGATGTCCGTACACTGGGTTGATGGCATTCCCCTCATTCCATCACACGGTATCTAGCATTTCATCGAGGTCTTCTTTAAGACCTTTAGAACAATTTTTGGAAACCCTGTCTCATTAATTGGGGCAGGGTAAATCAAAAAACTCTAGGGACTAATAATTCAATGTGTGGGTAGATCTAGAGACCTGGAAAAATATTTTTAAAATTTTTGAGTACCCAGGAGCATACTTGTAAAATTCCGGGCGAGCCCGCCAAAGCCCGGGCCCGGTATCAAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAGTTTTCTCCATTTTTTTTGTTTATTTTATTGTTTGTCTGTTTGATCTAAAAAACTCGAAAAAAAATTTTTGATTGAAAAAAATCACATAAGGGTCCCCCCTTATGTGTTTTTT</canonical>
            <polymorphic>GGATGCTGAGACAGAAGAGAAGTTCATCGAGAAAACAAGGTACCCGCTTCATTTTCTTCTTCTTCTTCTTAAAATTCGAAAAATTTGTTTCAGATGTTTCGTCCGTCAATACGAGAATGTACATGTTGTAGAAGCGGATATTCATCTGAATGGTCAACTGAGTCTTGGAGAGAATATTGCGGATAATGGAGGTGTCAAGACAGCCTTCAATGTGGGTTTTGTAGAAATTGGCGCCAGAAAAAAGTTTCGTTTAGGCGTACAAGGCGTGGAAGTCAAACACAACAGGGATCAGTGAGCCAGCGTTGCCTGGCTTCCAGAACTTTACCAGCCAGCAGATGTTCTTCTTGGCGTATGCTAATGTAAGTTTCCTAGAAATTGGATTTTCCAGTTCATCGCTGAAACATTTTAAACTTTACCTTGCGAAAAATTCTAACGTTTCTGAACTATGAAAATAAGCTCCAATGATCCTTCTATGATTCTTCAAAGGGTATAAAAGTAAWTCGGTCACATTGAACCATTTATAGTAAAATCGATATGGTCTCCAATATATTGCATAGTGACGCGAGAAACCCGTGAGATGTCCGTACACTGGGTTGATGGCATTCCCCTCATTCCATCACACGGTATCTAGCATTTCATCGAGGTCTTCTTTAAGACCTTTAGAACAATTTTTGGAAACCCTGTCTCATTAATTGGGGCAGGGTAAATCAAAAAACTCTAGGGACTAATAATTCAATGTGTGGGTAGATCTAGAGACCTGGAAAAATATTTTTAAAATTTTTGAGTACCCAGGAGCATACTTGTAAAATTCCGGGCGAGCCCGCCAAAGCCCGGGCCCGGTATCAAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAGTTTTCTCCATTTTTTTTGTTTATTTTATTGTTTGTCTGTTTGATCTAAAAAACTCGAAAAAAAATTTTTGATTGAAAAAAATCACATAAGGGTCCCCCCTTATGTGTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAACTTTACCTTGCGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTTAAAGAAGACCTCGATGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAAACTTTACCTTGCGAAAAATTCTAACGTTTCTGAACTATGAAAATAAGCTCCAATGATCCTTCTATGATTCTTCAAAGGGTATAAAAGTAAATCGGTCACATTGAACCATTTATAGTAAAATCGATATGGTCTCCAATATATTGCATAGTGACGCGAGAAACCCGTGAGATGTCCGTACACTGGGTTGATGGCATTCCCCTCATTCCATCACACGGTATCTAGCATTTCATCGAGGTCTTCTTTAAG</canonical_amplicon>
		<polymorphic_amplicon>TAAACTTTACCTTGCGAAAAATTCTAACGTTTCTGAACTATGAAAATAAGCTCCAATGATCCTTCTATGATTCTTCAAAGGGTATAAAAGTAAWTCGGTCACATTGAACCATTTATAGTAAAATCGATATGGTCTCCAATATATTGCATAGTGACGCGAGAAACCCGTGAGATGTCCGTACACTGGGTTGATGGCATTCCCCTCATTCCATCACACGGTATCTAGCATTTCATCGAGGTCTTCTTTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19474</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>868302</contig_pos>
        <strand>+</strand>
        <context>ATGGGAGACG[A/T]GGAGATTTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTTCAAACAGCAAACAGCCTCGTGGCTAGACGAGAGAGAATGGGAGACG</left_flank>
        <right_flank>GGAGATTTAGATAACCGAAGAGTTGCGAAATATCTGAATTTTGGAGTCTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTGAGAAAATTTGGCTCAAAGTTGACGGCATGGGTGAGCTTATTTCAGAAGGAATACGGTATTGAAAAGGACAAAAATGATCAAATGGCCGGCTGAGATTCATCATGAGGCGCACATCCGTCAGAAGGGCTTCACGGGAATTCGAAAGCTCTCAAAGCCGCTTCTTTCTCTGCCTTTTAGTATCCTTTCTCAAAGTCCCACTATTGCCCAGAAAGCCCATTTCAAAAAACCCCATTCCATTTGCCTAACCAATCCACTTCGTTCTTCTTTTTTTATCGTCTTCTTCTTCCTCTTTAAAATCGTTTCTTGTTCTCCGATAGATCACAGAACCACCAGTGCTATCTACTTGCAGGGGGCCACATGGTCTCTCTCTTCTTCTCTTTCCCTTTCCATTATCATCTCTCTCTCTCAAAAACGTCACTCGGCGCCTCTACTATGGCGCCCGCCGGTTCAAACAGCAAACAGCCTCGTGGCTAGACGAGAGAGAATGGGAGACGTGGAGATTTAGATAACCGAAGAGTTGCGAAATATCTGAATTTTGGAGTCTATGCATCTGTGTGTTGTGATGTAGTTGCGAAATCGGAGAAAATATGGTGACGAGGGTGAGAGAATCTATTTCAAGTGAGAAAAATTTCAAATATTGATCTTTTGATTATCGATTTTTGGCTCGAAAAAGAAAAAAGTACAGAGGATCCTCTCAAACTACAGTATCCCCAGAAATCGAATAATTGCTACCAAATGTTTAGGGGTGTGCGATCAATTTTTCTGTCTGTCTTTTCACCTTCCAAGCTACAGTATACCTTACGAGCTACAGTAAGCCTATAACATTTCTAGTTGATCTCTAGTGAAAATCTTAAAATTTCAATATTTCTTCTTCTTGAAAATCGGAGAACAAACCACACAGTTTTTCCGATAAAAAAGGTCAGATTTCTCATAAAAACGATGACATTACACCGTATGATCATCGGTGATAACTCAAAGTGATCCCTGTGTGTAAT</canonical>
            <polymorphic>AACTGAGAAAATTTGGCTCAAAGTTGACGGCATGGGTGAGCTTATTTCAGAAGGAATACGGTATTGAAAAGGACAAAAATGATCAAATGGCCGGCTGAGATTCATCATGAGGCGCACATCCGTCAGAAGGGCTTCACGGGAATTCGAAAGCTCTCAAAGCCGCTTCTTTCTCTGCCTTTTAGTATCCTTTCTCAAAGTCCCACTATTGCCCAGAAAGCCCATTTCAAAAAACCCCATTCCATTTGCCTAACCAATCCACTTCGTTCTTCTTTTTTTATCGTCTTCTTCTTCCTCTTTAAAATCGTTTCTTGTTCTCCGATAGATCACAGAACCACCAGTGCTATCTACTTGCAGGGGGCCACATGGTCTCTCTCTTCTTCTCTTTCCCTTTCCATTATCATCTCTCTCTCTCAAAAACGTCACTCGGCGCCTCTACTATGGCGCCCGCCGGTTCAAACAGCAAACAGCCTCGTGGCTAGACGAGAGAGAATGGGAGACGWGGAGATTTAGATAACCGAAGAGTTGCGAAATATCTGAATTTTGGAGTCTATGCATCTGTGTGTTGTGATGTAGTTGCGAAATCGGAGAAAATATGGTGACGAGGGTGAGAGAATCTATTTCAAGTGAGAAAAATTTCAAATATTGATCTTTTGATTATCGATTTTTGGCTCGAAAAAGAAAAAAGTACAGAGGATCCTCTCAAACTACAGTATCCCCAGAAATCGAATAATTGCTACCAAATGTTTAGGGGTGTGCGATCAATTTTTCTGTCTGTCTTTTCACCTTCCAAGCTACAGTATACCTTACGAGCTACAGTAAGCCTATAACATTTCTAGTTGATCTCTAGTGAAAATCTTAAAATTTCAATATTTCTTCTTCTTGAAAATCGGAGAACAAACCACACAGTTTTTCCGATAAAAAAGGTCAGATTTCTCATAAAAACGATGACATTACACCGTATGATCATCGGTGATAACTCAAAGTGATCCCTGTGTGTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>127 78 68 67 66 61 59 56 52 52 52 38 31 27 27 21 20 19 17 13 9 9 8 6 5 4 2 2 2 2</canonical_bands>
                <polymorphic_bands>127 86 78 68 67 66 61 56 52 52 52 38 31 27 21 20 19 17 13 9 9 8 6 5 4 2 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>503 417 80</canonical_bands>
                <polymorphic_bands>583 417</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATTATCATCTCTCTCTCTCAA</pcr_primer_p1>
		<pcr_primer_p2>ATTTGAAATTTTTCTCACTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCATTATCATCTCTCTCTCTCAAAAACGTCACTCGGCGCCTCTACTATGGCGCCCGCCGGTTCAAACAGCAAACAGCCTCGTGGCTAGACGAGAGAGAATGGGAGACGTGGAGATTTAGATAACCGAAGAGTTGCGAAATATCTGAATTTTGGAGTCTATGCATCTGTGTGTTGTGATGTAGTTGCGAAATCGGAGAAAATATGGTGACGAGGGTGAGAGAATCTATTTCAAGTGAGAAAAATTTCAAAT</canonical_amplicon>
		<polymorphic_amplicon>CCATTATCATCTCTCTCTCTCAAAAACGTCACTCGGCGCCTCTACTATGGCGCCCGCCGGTTCAAACAGCAAACAGCCTCGTGGCTAGACGAGAGAGAATGGGAGACGWGGAGATTTAGATAACCGAAGAGTTGCGAAATATCTGAATTTTGGAGTCTATGCATCTGTGTGTTGTGATGTAGTTGCGAAATCGGAGAAAATATGGTGACGAGGGTGAGAGAATCTATTTCAAGTGAGAAAAATTTCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19475</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>868094</contig_pos>
        <strand>+</strand>
        <context>CTTCTTCTTC[C/T]TCTTTAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGCCTAACCAATCCACTTCGTTCTTCTTTTTTTATCGTCTTCTTCTTC</left_flank>
        <right_flank>TCTTTAAAATCGTTTCTTGTTCTCCGATAGATCACAGAACCACCAGTGCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCATTGAGAAAGGAAACAAGAATAGAGAGTTAGATGAACGATATGATCGAAAGCCAATATTGCCTTTTTAGCCCATGTAAACCGTAACTATAAGCTCAATTATCTCGGTTCCTATGAGAGATATCAACAATATGTTAACTGATAAAACAATTCTGATATTATGATACACAGTTTGTCAGTTGATAGCTTCTTTATATCTTTGATAGGAACTGAGAAAATTTGGCTCAAAGTTGACGGCATGGGTGAGCTTATTTCAGAAGGAATACGGTATTGAAAAGGACAAAAATGATCAAATGGCCGGCTGAGATTCATCATGAGGCGCACATCCGTCAGAAGGGCTTCACGGGAATTCGAAAGCTCTCAAAGCCGCTTCTTTCTCTGCCTTTTAGTATCCTTTCTCAAAGTCCCACTATTGCCCAGAAAGCCCATTTCAAAAAACCCCATTCCATTTGCCTAACCAATCCACTTCGTTCTTCTTTTTTTATCGTCTTCTTCTTCCTCTTTAAAATCGTTTCTTGTTCTCCGATAGATCACAGAACCACCAGTGCTATCTACTTGCAGGGGGCCACATGGTCTCTCTCTTCTTCTCTTTCCCTTTCCATTATCATCTCTCTCTCTCAAAAACGTCACTCGGCGCCTCTACTATGGCGCCCGCCGGTTCAAACAGCAAACAGCCTCGTGGCTAGACGAGAGAGAATGGGAGACGTGGAGATTTAGATAACCGAAGAGTTGCGAAATATCTGAATTTTGGAGTCTATGCATCTGTGTGTTGTGATGTAGTTGCGAAATCGGAGAAAATATGGTGACGAGGGTGAGAGAATCTATTTCAAGTGAGAAAAATTTCAAATATTGATCTTTTGATTATCGATTTTTGGCTCGAAAAAGAAAAAAGTACAGAGGATCCTCTCAAACTACAGTATCCCCAGAAATCGAATAATTGCTACCAAATGTTTAGGGGTGTGCGATCAATTTTTCTGTCTGTCTTTTCACCTTCCAAGC</canonical>
            <polymorphic>TTCATTGAGAAAGGAAACAAGAATAGAGAGTTAGATGAACGATATGATCGAAAGCCAATATTGCCTTTTTAGCCCATGTAAACCGTAACTATAAGCTCAATTATCTCGGTTCCTATGAGAGATATCAACAATATGTTAACTGATAAAACAATTCTGATATTATGATACACAGTTTGTCAGTTGATAGCTTCTTTATATCTTTGATAGGAACTGAGAAAATTTGGCTCAAAGTTGACGGCATGGGTGAGCTTATTTCAGAAGGAATACGGTATTGAAAAGGACAAAAATGATCAAATGGCCGGCTGAGATTCATCATGAGGCGCACATCCGTCAGAAGGGCTTCACGGGAATTCGAAAGCTCTCAAAGCCGCTTCTTTCTCTGCCTTTTAGTATCCTTTCTCAAAGTCCCACTATTGCCCAGAAAGCCCATTTCAAAAAACCCCATTCCATTTGCCTAACCAATCCACTTCGTTCTTCTTTTTTTATCGTCTTCTTCTTCYTCTTTAAAATCGTTTCTTGTTCTCCGATAGATCACAGAACCACCAGTGCTATCTACTTGCAGGGGGCCACATGGTCTCTCTCTTCTTCTCTTTCCCTTTCCATTATCATCTCTCTCTCTCAAAAACGTCACTCGGCGCCTCTACTATGGCGCCCGCCGGTTCAAACAGCAAACAGCCTCGTGGCTAGACGAGAGAGAATGGGAGACGTGGAGATTTAGATAACCGAAGAGTTGCGAAATATCTGAATTTTGGAGTCTATGCATCTGTGTGTTGTGATGTAGTTGCGAAATCGGAGAAAATATGGTGACGAGGGTGAGAGAATCTATTTCAAGTGAGAAAAATTTCAAATATTGATCTTTTGATTATCGATTTTTGGCTCGAAAAAGAAAAAAGTACAGAGGATCCTCTCAAACTACAGTATCCCCAGAAATCGAATAATTGCTACCAAATGTTTAGGGGTGTGCGATCAATTTTTCTGTCTGTCTTTTCACCTTCCAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCTGCCTTTTAGTATCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>ACGTTTTTGAGAGAGAGAGATG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCTCTGCCTTTTAGTATCCTTTCTCAAAGTCCCACTATTGCCCAGAAAGCCCATTTCAAAAAACCCCATTCCATTTGCCTAACCAATCCACTTCGTTCTTCTTTTTTTATCGTCTTCTTCTTCCTCTTTAAAATCGTTTCTTGTTCTCCGATAGATCACAGAACCACCAGTGCTATCTACTTGCAGGGGGCCACATGGTCTCTCTCTTCTTCTCTTTCCCTTTCCATTATCATCTCTCTCTCTCAAAAACGT</canonical_amplicon>
		<polymorphic_amplicon>TCTCTGCCTTTTAGTATCCTTTCTCAAAGTCCCACTATTGCCCAGAAAGCCCATTTCAAAAAACCCCATTCCATTTGCCTAACCAATCCACTTCGTTCTTCTTTTTTTATCGTCTTCTTCTTCYTCTTTAAAATCGTTTCTTGTTCTCCGATAGATCACAGAACCACCAGTGCTATCTACTTGCAGGGGGCCACATGGTCTCTCTCTTCTTCTCTTTCCCTTTCCATTATCATCTCTCTCTCTCAAAAACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19476</snp_id>
        <super_contig>c011800915.Contig1</super_contig>
        <contig_pos>8258</contig_pos>
        <strand>+</strand>
        <context>GCGGGTCTGG[A/G]AAACCACAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTGCCGACTACACTATACACTACAACGATAGAGATAGAGGCGGGTCTGG</left_flank>
        <right_flank>AAACCACAAAGGGGTGGACATTCAAAGTTCGATTACTTGCGATTTATTAG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAAATGACATGATCCACCGCGTCGGCACCAACATTAGCGTGCTTCAGTGCTCCTTGCGAGGCGACCACTCCCAAATCCGTCGCACTCAGCCCCTTGAGTTTTCCGCCAAACGTTCCGAAGGCGGTACGTTTCGCTCCGACGATGAATACACCTAAACAATCACACTTCTAACATCACACATCACCTCGATTTTTACCTTTTCCTGCCATTGTTTCAGCCTGAAACTTTCAGGTGTCTTTTTGGTTCTGAAATAAACCCACATTAATGAAAAAAATATGGATTGTGAGCCACGAAAAACCTGGAAAAAAAATAAAAAATTGGGAGAAAAACGAAAAATTAGTTGGCAAAATAAAAGAGAACAGAAGAGACCGAAGAAGACACAGAGATAGATAGTGACCCGCTGTCTCGCGGCGGGGTCCTCTTATCATCTCGTGGACTTTGACCTACCCTGCCGACTACACTATACACTACAACGATAGAGATAGAGGCGGGTCTGGAAAACCACAAAGGGGTGGACATTCAAAGTTCGATTACTTGCGATTTATTAGATGCGCATAAAAAGTGATGACAAACGAGAAAGAAAACAGTGTGTCGCTGACACAACAAAGCGAGATTGTGTGGGGAGAAACAAGTAATGCGAATATATTTATTAACTGGATCCATGCTCTTCACAACGATCCCACTGGCTTCTCCGGATTCTCGGCCGAGTGAAGTGAGAGTTTCGCCTTGACGAGTGAGCTTGTCTTCTTCTGGCAACTGTCGTGATCTTCGTAGCGGATGACGTCGAAGAGTGGCTTTGTGAGATCCTTCGATGCTGCCATCAGCTTCTCCTTGAGGACCACTCTGTAATTAATTAGTTAATCGTTGGTTCAACCCTATTTGTCTTAATTTCACTCACCCAATTCTCAAATTGGTCTCATCATCATTGCAATCCTTGGTCCAGACACTGATCTTCGATCCCTTCCCTCTCACATTGCATACCAGTCCGCAAATCGACT</canonical>
            <polymorphic>CAAAAATGACATGATCCACCGCGTCGGCACCAACATTAGCGTGCTTCAGTGCTCCTTGCGAGGCGACCACTCCCAAATCCGTCGCACTCAGCCCCTTGAGTTTTCCGCCAAACGTTCCGAAGGCGGTACGTTTCGCTCCGACGATGAATACACCTAAACAATCACACTTCTAACATCACACATCACCTCGATTTTTACCTTTTCCTGCCATTGTTTCAGCCTGAAACTTTCAGGTGTCTTTTTGGTTCTGAAATAAACCCACATTAATGAAAAAAATATGGATTGTGAGCCACGAAAAACCTGGAAAAAAAATAAAAAATTGGGAGAAAAACGAAAAATTAGTTGGCAAAATAAAAGAGAACAGAAGAGACCGAAGAAGACACAGAGATAGATAGTGACCCGCTGTCTCGCGGCGGGGTCCTCTTATCATCTCGTGGACTTTGACCTACCCTGCCGACTACACTATACACTACAACGATAGAGATAGAGGCGGGTCTGGRAAACCACAAAGGGGTGGACATTCAAAGTTCGATTACTTGCGATTTATTAGATGCGCATAAAAAGTGATGACAAACGAGAAAGAAAACAGTGTGTCGCTGACACAACAAAGCGAGATTGTGTGGGGAGAAACAAGTAATGCGAATATATTTATTAACTGGATCCATGCTCTTCACAACGATCCCACTGGCTTCTCCGGATTCTCGGCCGAGTGAAGTGAGAGTTTCGCCTTGACGAGTGAGCTTGTCTTCTTCTGGCAACTGTCGTGATCTTCGTAGCGGATGACGTCGAAGAGTGGCTTTGTGAGATCCTTCGATGCTGCCATCAGCTTCTCCTTGAGGACCACTCTGTAATTAATTAGTTAATCGTTGGTTCAACCCTATTTGTCTTAATTTCACTCACCCAATTCTCAAATTGGTCTCATCATCATTGCAATCCTTGGTCCAGACACTGATCTTCGATCCCTTCCCTCTCACATTGCATACCAGTCCGCAAATCGACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>496 198 179 69 58</canonical_bands>
                <polymorphic_bands>694 179 69 58</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTTATCATCTCGTGGACTTT</pcr_primer_p1>
		<pcr_primer_p2>AGCATGGATCCAGTTAATAAATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTCTTATCATCTCGTGGACTTTGACCTACCCTGCCGACTACACTATACACTACAACGATAGAGATAGAGGCGGGTCTGGAAAACCACAAAGGGGTGGACATTCAAAGTTCGATTACTTGCGATTTATTAGATGCGCATAAAAAGTGATGACAAACGAGAAAGAAAACAGTGTGTCGCTGACACAACAAAGCGAGATTGTGTGGGGAGAAACAAGTAATGCGAATATATTTATTAACTGGATCCATGCT</canonical_amplicon>
		<polymorphic_amplicon>CTCTTATCATCTCGTGGACTTTGACCTACCCTGCCGACTACACTATACACTACAACGATAGAGATAGAGGCGGGTCTGGRAAACCACAAAGGGGTGGACATTCAAAGTTCGATTACTTGCGATTTATTAGATGCGCATAAAAAGTGATGACAAACGAGAAAGAAAACAGTGTGTCGCTGACACAACAAAGCGAGATTGTGTGGGGAGAAACAAGTAATGCGAATATATTTATTAACTGGATCCATGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19477</snp_id>
        <super_contig>c011800915.Contig1</super_contig>
        <contig_pos>10575</contig_pos>
        <strand></strand>
        <context>CGCTATTTTT[A/T]GGGGGTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCGTTTTAGCTTCTTTTCCGCTTCAACCTGAAATTTTTCGCTATTTTT</left_flank>
        <right_flank>GGGGGTTTTTTCGCTTCTTTTTGGCGTACTTTGCACGCATCTAGCACACT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACATTTGTGCTTGTAATTGACGAACCACAGAAGAACTGATAGCTGTTCTAGAAGGTTCCTTTGGGGAGTTGGCGATGTGGTGCCATCTGGCGCCACCTCACCACCCAGATGACGCATTTAGGACAAGCTTGCAGAAAAATTAGTTCAAAAAAATAGGAGAGAACCCGTAGAAAAAGTGTACAAAGCGATAGAAAATAAAGAAAAAGTTCAAAAAAAAACTAGGTCAAAAATCAATTATCATAGTCATCATCGGTTGGCGCAGCGGTGCCATCCGATGGTCCTTCTCCTCCGAACATTTGCGCGTTGGCAGCAGCCACCGCAGCGGCTTGTGCTTGCTGATGAGCCATTTGCTGATCGATTTCCTTTTGGCGTGCCTTTGCGATGAGCTCTTGTTGCATTTCGTACAGTTTTTCTTCTGGAATTCCACACTTTTCGAGGCGGGAGTTCTTTCGTTTTAGCTTCTTTTCCGCTTCAACCTGAAATTTTTCGCTATTTTTAGGGGGTTTTTTCGCTTCTTTTTGGCGTACTTTGCACGCATCTAGCACACTATCCGCCGCTTCCAAATAGTCCGCCGTGAATCCCAAGTTCTGCAACGCCTTCTGCACATGCTCATGGTAGATCGTCTTGCGCTGATCCTGACTCGCAATCTTCTGAGCTTCTCGCGCGACGTGCTTCACAAATTCCACACAGCACGCGTTGATCATGTCCCGGGATTCGTTGGCGATTCGAACGTCGGGGATGATCTCTTTGACGATTTGATTGATTCCCTTCTGTGGAAGTCCAATCTCATTGTCCTCATCCATTTTTCTGTGGCTGAGTGGGAGAGGGAAACGGCCTGAAATTGCGAAAAATTGCTAAAAATATGCGATTTGGCCATTATTTGAAACTAAAAATTCGAGAAAAAAATTGGGGGTCAAAAACCCGTAAAATTCAAAGATCAGCAAGCTTTTTTAAAAGTTTTCACCATGAAAATTGGCTGAAAATCATGAAAAAATGCT</canonical>
            <polymorphic>TGACATTTGTGCTTGTAATTGACGAACCACAGAAGAACTGATAGCTGTTCTAGAAGGTTCCTTTGGGGAGTTGGCGATGTGGTGCCATCTGGCGCCACCTCACCACCCAGATGACGCATTTAGGACAAGCTTGCAGAAAAATTAGTTCAAAAAAATAGGAGAGAACCCGTAGAAAAAGTGTACAAAGCGATAGAAAATAAAGAAAAAGTTCAAAAAAAAACTAGGTCAAAAATCAATTATCATAGTCATCATCGGTTGGCGCAGCGGTGCCATCCGATGGTCCTTCTCCTCCGAACATTTGCGCGTTGGCAGCAGCCACCGCAGCGGCTTGTGCTTGCTGATGAGCCATTTGCTGATCGATTTCCTTTTGGCGTGCCTTTGCGATGAGCTCTTGTTGCATTTCGTACAGTTTTTCTTCTGGAATTCCACACTTTTCGAGGCGGGAGTTCTTTCGTTTTAGCTTCTTTTCCGCTTCAACCTGAAATTTTTCGCTATTTTTWGGGGGTTTTTTCGCTTCTTTTTGGCGTACTTTGCACGCATCTAGCACACTATCCGCCGCTTCCAAATAGTCCGCCGTGAATCCCAAGTTCTGCAACGCCTTCTGCACATGCTCATGGTAGATCGTCTTGCGCTGATCCTGACTCGCAATCTTCTGAGCTTCTCGCGCGACGTGCTTCACAAATTCCACACAGCACGCGTTGATCATGTCCCGGGATTCGTTGGCGATTCGAACGTCGGGGATGATCTCTTTGACGATTTGATTGATTCCCTTCTGTGGAAGTCCAATCTCATTGTCCTCATCCATTTTTCTGTGGCTGAGTGGGAGAGGGAAACGGCCTGAAATTGCGAAAAATTGCTAAAAATATGCGATTTGGCCATTATTTGAAACTAAAAATTCGAGAAAAAAATTGGGGGTCAAAAACCCGTAAAATTCAAAGATCAGCAAGCTTTTTTAAAAGTTTTCACCATGAAAATTGGCTGAAAATCATGAAAAAATGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGAGCTCTTGTTGCATTT</pcr_primer_p1>
		<pcr_primer_p2>GCAAGACGATCTACCATGAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATGAGCTCTTGTTGCATTTCGTACAGTTTTTCTTCTGGAATTCCACACTTTTCGAGGCGGGAGTTCTTTCGTTTTAGCTTCTTTTCCGCTTCAACCTGAAATTTTTCGCTATTTTTAGGGGGTTTTTTCGCTTCTTTTTGGCGTACTTTGCACGCATCTAGCACACTATCCGCCGCTTCCAAATAGTCCGCCGTGAATCCCAAGTTCTGCAACGCCTTCTGCACATGCTCATGGTAGATCGTCTTGC</canonical_amplicon>
		<polymorphic_amplicon>GATGAGCTCTTGTTGCATTTCGTACAGTTTTTCTTCTGGAATTCCACACTTTTCGAGGCGGGAGTTCTTTCGTTTTAGCTTCTTTTCCGCTTCAACCTGAAATTTTTCGCTATTTTTWGGGGGTTTTTTCGCTTCTTTTTGGCGTACTTTGCACGCATCTAGCACACTATCCGCCGCTTCCAAATAGTCCGCCGTGAATCCCAAGTTCTGCAACGCCTTCTGCACATGCTCATGGTAGATCGTCTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19478</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>33992</contig_pos>
        <strand>+</strand>
        <context>ATAGAATAAT[C/T]AACATGTTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAGTTCCGACAACGTGGGAAGTGCATGAAGCAATTAGAAATAGAATAAT</left_flank>
        <right_flank>AACATGTTCAAATTGAGAACATATGAAAAATAAGGGCGGATTTTATACAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAACGATGGACACATTCTCATGCATTTTTTTGAAATCTCAAAAACAAATCAGATCTGAAAATTTTGATAGGAGTTACTGGAAAATTTTGTAAGCCTGTGATCAAATTCAAAGCATTATTATAAAACTAAACTTTTATCTCAAAACTAGAATCCCTTAAAAAATACAAACTTTAGGAATCATTATTTTCCTCGGATGAACCGACATTTCCAGCCATTTCCTGGAGTACCTCATTTGCTTCTTCCAAAATTCCAACACCGTACTTTTGGACCAATATCTGAGTAGCCAACTCCAAAACTTCTCCATTGAACTGCATCTTTTTTGAATCTTCATTCGCAACTTGTGAATCAACAACTGATCCATCCGAAACCGATGGCTCTGTCACCAAGTTCAAAGTTTGCAGAGCTTCAAACAACGCATCCTGCACTGCTTGTCTAGTAGTTTCGCTAACAGTTCCGACAACGTGGGAAGTGCATGAAGCAATTAGAAATAGAATAATCAACATGTTCAAATTGAGAACATATGAAAAATAAGGGCGGATTTTATACAGGGATTCTATTGGAGTCGATCGGAAATGTCACACCTATACAAGTTTTGATTGCTTAGCTGCTGCTCGTGATGGAGGGCACCCACACAAAACATGTCTGCACAGAAATGGCTTAACATCAGAAAAATATTCAAAAATTTATATTGGTTGAAAAATTCCAGATCTTCAGAAAAATAAGCTTGTTCAAATTTGATTAGATGTCCGGTAAGGAATACCACAACTTCGAGATCTCGGACCTAACTTTAAAAAGTCAATCCGGAAGAAGCCCGATAACGCGTGATTCGAAAATGTTATGTCAAAAAACTTATCGCTGTAAAACCTGTGAAAGAAGAGCCCTAACACTGTCAAGATTAAGCTCAATTATCTCGGCTCCTAGAAGAGATATCAAAAATGTGTCAACTGATAAAATACTGACGATATTATGATAAACAATTTATCAGTCGACAACTTTCT</canonical>
            <polymorphic>GAAAACGATGGACACATTCTCATGCATTTTTTTGAAATCTCAAAAACAAATCAGATCTGAAAATTTTGATAGGAGTTACTGGAAAATTTTGTAAGCCTGTGATCAAATTCAAAGCATTATTATAAAACTAAACTTTTATCTCAAAACTAGAATCCCTTAAAAAATACAAACTTTAGGAATCATTATTTTCCTCGGATGAACCGACATTTCCAGCCATTTCCTGGAGTACCTCATTTGCTTCTTCCAAAATTCCAACACCGTACTTTTGGACCAATATCTGAGTAGCCAACTCCAAAACTTCTCCATTGAACTGCATCTTTTTTGAATCTTCATTCGCAACTTGTGAATCAACAACTGATCCATCCGAAACCGATGGCTCTGTCACCAAGTTCAAAGTTTGCAGAGCTTCAAACAACGCATCCTGCACTGCTTGTCTAGTAGTTTCGCTAACAGTTCCGACAACGTGGGAAGTGCATGAAGCAATTAGAAATAGAATAATYAACATGTTCAAATTGAGAACATATGAAAAATAAGGGCGGATTTTATACAGGGATTCTATTGGAGTCGATCGGAAATGTCACACCTATACAAGTTTTGATTGCTTAGCTGCTGCTCGTGATGGAGGGCACCCACACAAAACATGTCTGCACAGAAATGGCTTAACATCAGAAAAATATTCAAAAATTTATATTGGTTGAAAAATTCCAGATCTTCAGAAAAATAAGCTTGTTCAAATTTGATTAGATGTCCGGTAAGGAATACCACAACTTCGAGATCTCGGACCTAACTTTAAAAAGTCAATCCGGAAGAAGCCCGATAACGCGTGATTCGAAAATGTTATGTCAAAAAACTTATCGCTGTAAAACCTGTGAAAGAAGAGCCCTAACACTGTCAAGATTAAGCTCAATTATCTCGGCTCCTAGAAGAGATATCAAAAATGTGTCAACTGATAAAATACTGACGATATTATGATAAACAATTTATCAGTCGACAACTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTGTCTAGTAGTTTCGCTAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCTGATGTTAAGCCATTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GCTTGTCTAGTAGTTTCGCTAACAGTTCCGACAACGTGGGAAGTGCATGAAGCAATTAGAAATAGAATAATCAACATGTTCAAATTGAGAACATATGAAAAATAAGGGCGGATTTTATACAGGGATTCTATTGGAGTCGATCGGAAATGTCACACCTATACAAGTTTTGATTGCTTAGCTGCTGCTCGTGATGGAGGGCACCCACACAAAACATGTCTGCACAGAAATGGCTTAACATCAGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>GCTTGTCTAGTAGTTTCGCTAACAGTTCCGACAACGTGGGAAGTGCATGAAGCAATTAGAAATAGAATAATYAACATGTTCAAATTGAGAACATATGAAAAATAAGGGCGGATTTTATACAGGGATTCTATTGGAGTCGATCGGAAATGTCACACCTATACAAGTTTTGATTGCTTAGCTGCTGCTCGTGATGGAGGGCACCCACACAAAACATGTCTGCACAGAAATGGCTTAACATCAGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19479</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>34202</contig_pos>
        <strand>+</strand>
        <context>AAATTCCAGA[C/T]CTTCAGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAACATCAGAAAAATATTCAAAAATTTATATTGGTTGAAAAATTCCAGA</left_flank>
        <right_flank>CTTCAGAAAAATAAGCTTGTTCAAATTTGATTAGATGTCCGGTAAGGAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGCCATTTCCTGGAGTACCTCATTTGCTTCTTCCAAAATTCCAACACCGTACTTTTGGACCAATATCTGAGTAGCCAACTCCAAAACTTCTCCATTGAACTGCATCTTTTTTGAATCTTCATTCGCAACTTGTGAATCAACAACTGATCCATCCGAAACCGATGGCTCTGTCACCAAGTTCAAAGTTTGCAGAGCTTCAAACAACGCATCCTGCACTGCTTGTCTAGTAGTTTCGCTAACAGTTCCGACAACGTGGGAAGTGCATGAAGCAATTAGAAATAGAATAATCAACATGTTCAAATTGAGAACATATGAAAAATAAGGGCGGATTTTATACAGGGATTCTATTGGAGTCGATCGGAAATGTCACACCTATACAAGTTTTGATTGCTTAGCTGCTGCTCGTGATGGAGGGCACCCACACAAAACATGTCTGCACAGAAATGGCTTAACATCAGAAAAATATTCAAAAATTTATATTGGTTGAAAAATTCCAGATCTTCAGAAAAATAAGCTTGTTCAAATTTGATTAGATGTCCGGTAAGGAATACCACAACTTCGAGATCTCGGACCTAACTTTAAAAAGTCAATCCGGAAGAAGCCCGATAACGCGTGATTCGAAAATGTTATGTCAAAAAACTTATCGCTGTAAAACCTGTGAAAGAAGAGCCCTAACACTGTCAAGATTAAGCTCAATTATCTCGGCTCCTAGAAGAGATATCAAAAATGTGTCAACTGATAAAATACTGACGATATTATGATAAACAATTTATCAGTCGACAACTTTCTTTTCATATCTTTGCCACGATCCAAAAAAAATGGCTCAAAGTTAAAAGTTACTGTGTGCCCTTCGCGAAATCACAAAGATCCAGAACCCATTGTTAGAAATCGCGCCTCAGTAAAACTTTTAGGTTAAACGAAGTTAAATAATTTCTAATTGAACATTTATCTTATCGTTGTACGTTTGATACTTAGGCAATGGAAAAAAAATCAGAAGTG</canonical>
            <polymorphic>CAGCCATTTCCTGGAGTACCTCATTTGCTTCTTCCAAAATTCCAACACCGTACTTTTGGACCAATATCTGAGTAGCCAACTCCAAAACTTCTCCATTGAACTGCATCTTTTTTGAATCTTCATTCGCAACTTGTGAATCAACAACTGATCCATCCGAAACCGATGGCTCTGTCACCAAGTTCAAAGTTTGCAGAGCTTCAAACAACGCATCCTGCACTGCTTGTCTAGTAGTTTCGCTAACAGTTCCGACAACGTGGGAAGTGCATGAAGCAATTAGAAATAGAATAATCAACATGTTCAAATTGAGAACATATGAAAAATAAGGGCGGATTTTATACAGGGATTCTATTGGAGTCGATCGGAAATGTCACACCTATACAAGTTTTGATTGCTTAGCTGCTGCTCGTGATGGAGGGCACCCACACAAAACATGTCTGCACAGAAATGGCTTAACATCAGAAAAATATTCAAAAATTTATATTGGTTGAAAAATTCCAGAYCTTCAGAAAAATAAGCTTGTTCAAATTTGATTAGATGTCCGGTAAGGAATACCACAACTTCGAGATCTCGGACCTAACTTTAAAAAGTCAATCCGGAAGAAGCCCGATAACGCGTGATTCGAAAATGTTATGTCAAAAAACTTATCGCTGTAAAACCTGTGAAAGAAGAGCCCTAACACTGTCAAGATTAAGCTCAATTATCTCGGCTCCTAGAAGAGATATCAAAAATGTGTCAACTGATAAAATACTGACGATATTATGATAAACAATTTATCAGTCGACAACTTTCTTTTCATATCTTTGCCACGATCCAAAAAAAATGGCTCAAAGTTAAAAGTTACTGTGTGCCCTTCGCGAAATCACAAAGATCCAGAACCCATTGTTAGAAATCGCGCCTCAGTAAAACTTTTAGGTTAAACGAAGTTAAATAATTTCTAATTGAACATTTATCTTATCGTTGTACGTTTGATACTTAGGCAATGGAAAAAAAATCAGAAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>244 210 146 141 134 66 59</canonical_bands>
                <polymorphic_bands>244 210 207 146 134 59</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>497 437 66</canonical_bands>
                <polymorphic_bands>563 437</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>497 303 134 66</canonical_bands>
                <polymorphic_bands>563 303 134</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGATTTTATACAGGGATTCTAT</pcr_primer_p1>
		<pcr_primer_p2>GAGATCTCGAAGTTGTGGTATT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CGGATTTTATACAGGGATTCTATTGGAGTCGATCGGAAATGTCACACCTATACAAGTTTTGATTGCTTAGCTGCTGCTCGTGATGGAGGGCACCCACACAAAACATGTCTGCACAGAAATGGCTTAACATCAGAAAAATATTCAAAAATTTATATTGGTTGAAAAATTCCAGATCTTCAGAAAAATAAGCTTGTTCAAATTTGATTAGATGTCCGGTAAGGAATACCACAACTTCGAGATCTC</canonical_amplicon>
		<polymorphic_amplicon>CGGATTTTATACAGGGATTCTATTGGAGTCGATCGGAAATGTCACACCTATACAAGTTTTGATTGCTTAGCTGCTGCTCGTGATGGAGGGCACCCACACAAAACATGTCTGCACAGAAATGGCTTAACATCAGAAAAATATTCAAAAATTTATATTGGTTGAAAAATTCCAGAYCTTCAGAAAAATAAGCTTGTTCAAATTTGATTAGATGTCCGGTAAGGAATACCACAACTTCGAGATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19480</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>74953</contig_pos>
        <strand>+</strand>
        <context>ATACAGTTAT[C/T]AACACAATTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGAAGCTTCTCGAATGGCTCAAGAAAAAGGCCGGATCGAATACAGTTAT</left_flank>
        <right_flank>AACACAATTGGATCTAACTAGTAGACCAACCCTTCCTGTGATATTCAATA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTGAAGTATTACAAAAACTTGAATATTGTTGATGAATTTTAGTGCCAGTTTTTTCGTATTATATTTTTTTAGGAATTACCGTTTTTCGTCTAATAGAAGCCCATCTCTATTTGAAGTCCACCTCTAATAGAAGCCCACATTCTGACGTGCTTAAAAACATGGAAGAGCACCCTCTAACAGAAGTACGGGCAGTTCAGTTAGTGCAGTTTGAACAGTTCAGTTCGTCTATTCGGTTATTGTAGACATTTTCTTTCTATTTCAGTAAAAATTCTGGTAATTTCAGTTTTTACTAGTTTCATGAAAAGGAGGTTGAAAAATAGAAGCCCATGGACTTCAATTGAAGGAAATACGGTAGCTACATTATTATTCAAAATTGTTTCTCCTCTTACCATTGAAAACTGTTAATTTCCAGACCTACACCACCGACTCTATTCTCAAGCGTGAGAATCAGAAGCTTCTCGAATGGCTCAAGAAAAAGGCCGGATCGAATACAGTTATTAACACAATTGGATCTAACTAGTAGACCAACCCTTCCTGTGATATTCAATAAATGCATGTTTTTTTCCCTTAATGTTTTTTGATAACATAATTTTGAAAACGGATAAAAAACGGGAATAAGTGAAAGTGATTGGGTGAAATCGAGGAAAAATTATGATGTTGCATAAAAAAGTGAGTGGGAGAGAAAAGAAAATGAAGTGATAAGAGAAAGTTGCAGGGGAGTGATTGCGGAAAGTGAAATTAGAGAAAAAGGGGGAAAATTCAAAAAACATGTTGAGAAGTTTTAACTGGAATAATTTGCAAGACAAAAACAGAAAAAAAACCTAATTTTGATACCAAGACTGAAGTTTGGATCTGTTTCTGAGTTTGGAGAGAGGTCTTAGAGTGCTTTGGTAAGCTTGTAAAAAGTTTAGATTAAAACAATTGGAGAAAATTTTTATTCGTTTTTTACAGCCCCATGTTGCACTGATAAAAACATCCCAATCTGTTAACACTCCAATA</canonical>
            <polymorphic>AGTGAAGTATTACAAAAACTTGAATATTGTTGATGAATTTTAGTGCCAGTTTTTTCGTATTATATTTTTTTAGGAATTACCGTTTTTCGTCTAATAGAAGCCCATCTCTATTTGAAGTCCACCTCTAATAGAAGCCCACATTCTGACGTGCTTAAAAACATGGAAGAGCACCCTCTAACAGAAGTACGGGCAGTTCAGTTAGTGCAGTTTGAACAGTTCAGTTCGTCTATTCGGTTATTGTAGACATTTTCTTTCTATTTCAGTAAAAATTCTGGTAATTTCAGTTTTTACTAGTTTCATGAAAAGGAGGTTGAAAAATAGAAGCCCATGGACTTCAATTGAAGGAAATACGGTAGCTACATTATTATTCAAAATTGTTTCTCCTCTTACCATTGAAAACTGTTAATTTCCAGACCTACACCACCGACTCTATTCTCAAGCGTGAGAATCAGAAGCTTCTCGAATGGCTCAAGAAAAAGGCCGGATCGAATACAGTTATYAACACAATTGGATCTAACTAGTAGACCAACCCTTCCTGTGATATTCAATAAATGCATGTTTTTTTCCCTTAATGTTTTTTGATAACATAATTTTGAAAACGGATAAAAAACGGGAATAAGTGAAAGTGATTGGGTGAAATCGAGGAAAAATTATGATGTTGCATAAAAAAGTGAGTGGGAGAGAAAAGAAAATGAAGTGATAAGAGAAAGTTGCAGGGGAGTGATTGCGGAAAGTGAAATTAGAGAAAAAGGGGGAAAATTCAAAAAACATGTTGAGAAGTTTTAACTGGAATAATTTGCAAGACAAAAACAGAAAAAAAACCTAATTTTGATACCAAGACTGAAGTTTGGATCTGTTTCTGAGTTTGGAGAGAGGTCTTAGAGTGCTTTGGTAAGCTTGTAAAAAGTTTAGATTAAAACAATTGGAGAAAATTTTTATTCGTTTTTTACAGCCCCATGTTGCACTGATAAAAACATCCCAATCTGTTAACACTCCAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>251 214 152 131 96 73 70 13</canonical_bands>
                <polymorphic_bands>251 214 166 152 131 73 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAAAACTGTTAATTTCCAGAC</pcr_primer_p1>
		<pcr_primer_p2>CACCCAATCACTTTCACTTATT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTGAAAACTGTTAATTTCCAGACCTACACCACCGACTCTATTCTCAAGCGTGAGAATCAGAAGCTTCTCGAATGGCTCAAGAAAAAGGCCGGATCGAATACAGTTATTAACACAATTGGATCTAACTAGTAGACCAACCCTTCCTGTGATATTCAATAAATGCATGTTTTTTTCCCTTAATGTTTTTTGATAACATAATTTTGAAAACGGATAAAAAACGGGAATAAGTGAAAGTGATTGGGTG</canonical_amplicon>
		<polymorphic_amplicon>TTGAAAACTGTTAATTTCCAGACCTACACCACCGACTCTATTCTCAAGCGTGAGAATCAGAAGCTTCTCGAATGGCTCAAGAAAAAGGCCGGATCGAATACAGTTATYAACACAATTGGATCTAACTAGTAGACCAACCCTTCCTGTGATATTCAATAAATGCATGTTTTTTTCCCTTAATGTTTTTTGATAACATAATTTTGAAAACGGATAAAAAACGGGAATAAGTGAAAGTGATTGGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19481</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>76320</contig_pos>
        <strand>+</strand>
        <context>gtATGCCGAT[C/T]ATGAGCTATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGGCTCCAAGTTTGGGGGCATTCTATGAGAGTGGTTACAGTATGCCGAT</left_flank>
        <right_flank>ATGAGCTATTATGAGCTCGTGAGGTCTTTTTTCGTTGAACCAAATCATGC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGTAGAAAAGACGCAAACTAATGGGCGGGAGGAAATTAGAAGAGAAGAAAAAGCTGTTGGTTGTATTGTGAGACTGAAATACCAGACCTATTGGCGACGATCGTTAGCGAGAAAACAAAAATGTGGACCTTCAATAGGCCGGCCACACCACCACCGGACCATCGAGGAAAAAGGGGTTGGATGGTTTCAAAAGCAGAAAACGAGGTGAGTCGAAAGTTTTCATATACTTTGATTACAAAAATTTTGAACTTTTGAGTATGATTCATTGATGTGAATTACCGTAAACACTCTAATAATGGCCCAGTCTAACTTTCAACTTTGAACCAATTTATCTCGTTTGCTGTGATAGATATCAAAAAAGGTCAACTGATAAAACATTTTTCATATTATGATAAACATTTTATCTGTTGACCACTTTTTGATATCATTAACAGGAAGTGAGATACAACGGCTCCAAGTTTGGGGGCATTCTATGAGAGTGGTTACAGTATGCCGATCATGAGCTATTATGAGCTCGTGAGGTCTTTTTTCGTTGAACCAAATCATGCGAAATCGTTCTTCCCCAAATTTTAATTTTCCAACTTCTAACATTCCTCCATTTCTTCTAATTTACTAAATACCTAATTCCTATTGGCTTCTCTGTAATACTAAAACTCGCTTTTTTTCGTCTGTCGCAACAGAAGCCAAGATGACTATCTCGAGATAGTAGTTCAGAAGTGAAATGAACTGGGAGAGAAACGAATTAAATGAAATCAAATGACTTCTTCTTTATTTAATCTGTATAGGTGTAAAATTGGATTTCTTACGATTCTTAAAAAGATCAAATTGAATAATTGAAGAGAACTTGTGTGTTCTGGAACCCAGTTGAGGTCCCTGCACATTTTCAAGGCTAAATTTCAAGCCAAAAATATTTCTGCTAATATTTAATAGGAATTTTCGGGCCCACCTGCAGGCAAGGGCCCTCTCCCATGCAAACGCGCTCTATGGCCACGCGATAG</canonical>
            <polymorphic>GATGTAGAAAAGACGCAAACTAATGGGCGGGAGGAAATTAGAAGAGAAGAAAAAGCTGTTGGTTGTATTGTGAGACTGAAATACCAGACCTATTGGCGACGATCGTTAGCGAGAAAACAAAAATGTGGACCTTCAATAGGCCGGCCACACCACCACCGGACCATCGAGGAAAAAGGGGTTGGATGGTTTCAAAAGCAGAAAACGAGGTGAGTCGAAAGTTTTCATATACTTTGATTACAAAAATTTTGAACTTTTGAGTATGATTCATTGATGTGAATTACCGTAAACACTCTAATAATGGCCCAGTCTAACTTTCAACTTTGAACCAATTTATCTCGTTTGCTGTGATAGATATCAAAAAAGGTCAACTGATAAAACATTTTTCATATTATGATAAACATTTTATCTGTTGACCACTTTTTGATATCATTAACAGGAAGTGAGATACAACGGCTCCAAGTTTGGGGGCATTCTATGAGAGTGGTTACAGTATGCCGATYATGAGCTATTATGAGCTCGTGAGGTCTTTTTTCGTTGAACCAAATCATGCGAAATCGTTCTTCCCCAAATTTTAATTTTCCAACTTCTAACATTCCTCCATTTCTTCTAATTTACTAAATACCTAATTCCTATTGGCTTCTCTGTAATACTAAAACTCGCTTTTTTTCGTCTGTCGCAACAGAAGCCAAGATGACTATCTCGAGATAGTAGTTCAGAAGTGAAATGAACTGGGAGAGAAACGAATTAAATGAAATCAAATGACTTCTTCTTTATTTAATCTGTATAGGTGTAAAATTGGATTTCTTACGATTCTTAAAAAGATCAAATTGAATAATTGAAGAGAACTTGTGTGTTCTGGAACCCAGTTGAGGTCCCTGCACATTTTCAAGGCTAAATTTCAAGCCAAAAATATTTCTGCTAATATTTAATAGGAATTTTCGGGCCCACCTGCAGGCAAGGGCCCTCTCCCATGCAAACGCGCTCTATGGCCACGCGATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>396 324 180 100</canonical_bands>
                <polymorphic_bands>720 180 100</polymorphic_bands>
            </assay>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 424 46 30</canonical_bands>
                <polymorphic_bands>546 424 30</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>500 181 155 144 18 2</canonical_bands>
                <polymorphic_bands>518 181 155 144 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGTATGATTCATTGATGTGAA</pcr_primer_p1>
		<pcr_primer_p2>AAATTAAAATTTGGGGAAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>324</pcr_amplicon_size>
		<canonical_amplicon>TGAGTATGATTCATTGATGTGAATTACCGTAAACACTCTAATAATGGCCCAGTCTAACTTTCAACTTTGAACCAATTTATCTCGTTTGCTGTGATAGATATCAAAAAAGGTCAACTGATAAAACATTTTTCATATTATGATAAACATTTTATCTGTTGACCACTTTTTGATATCATTAACAGGAAGTGAGATACAACGGCTCCAAGTTTGGGGGCATTCTATGAGAGTGGTTACAGTATGCCGATCATGAGCTATTATGAGCTCGTGAGGTCTTTTTTCGTTGAACCAAATCATGCGAAATCGTTCTTCCCCAAATTTTAATTT</canonical_amplicon>
		<polymorphic_amplicon>TGAGTATGATTCATTGATGTGAATTACCGTAAACACTCTAATAATGGCCCAGTCTAACTTTCAACTTTGAACCAATTTATCTCGTTTGCTGTGATAGATATCAAAAAAGGTCAACTGATAAAACATTTTTCATATTATGATAAACATTTTATCTGTTGACCACTTTTTGATATCATTAACAGGAAGTGAGATACAACGGCTCCAAGTTTGGGGGCATTCTATGAGAGTGGTTACAGTATGCCGATYATGAGCTATTATGAGCTCGTGAGGTCTTTTTTCGTTGAACCAAATCATGCGAAATCGTTCTTCCCCAAATTTTAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19482</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>108929</contig_pos>
        <strand>+</strand>
        <context>TTTAATAAAA[A/C]AAATAGAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATACAGACTAAAGAACGAGATAAAGATGATGTTCGGTTTTTAATAAAA</left_flank>
        <right_flank>AAATAGAATTCACTGAAGCAGTTGTGCCGGGAAAAAAAATAAATACAATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAATTGGTAGGTACAGAATCTAAACCAATTTTAAATCTTCAAAAATAGTTTTAAGTCTTACGTTCATGGTTATCCCATAAGTCATGTCGATTGTTCCAGCTATAGGACGGGGGTACCCTTTTTCTTTCGACCATTCCTCGGGAGTGAGACCACTGAAGGTATTGAACTTGCAAATTTATCTTCTGACAAACAAACTGACCTGCAGTTATAAAGTGGAATACCTTCGATAGAACCATACTTGATGATATTGTTCATTTCTGTATTGAAAAAAAAAAGGTTTGAGCTAGAAAGAGGGGGAAGCAACTAACTGTCTGTATGACGCGGAAGGGGTTTTGTCGAAAGCAATCCGCTGACGGAAATTGAGCACCCATTGTTTCTCGAAGTTATCAGTCTCGTTATTCTGATTAACCAACACACAACTATAGTTCCGGTCCTACTTCGTTGTTAAAATACAGACTAAAGAACGAGATAAAGATGATGTTCGGTTTTTAATAAAAAAAATAGAATTCACTGAAGCAGTTGTGCCGGGAAAAAAAATAAATACAATAGGTTGCTCACGGTTGTAGTCAATTATTGTGAATATATTGTTGATTGATCGTTAAAGAAATTGAAGACAATTCGAAAACAAAAAAATTCAATAATTTCGGAAAATAATTTCTCCCCACTCTAATATCATTTTTGTGAATGCAACTGACCATGGAAAATACACTTGCCAGTTGTCCCATTACGTTGGGAATTGACATACCTTAAAACTTGTATTAGAAGGGCCCGCGTCTTTTATTGTTCCGAGGTACCTCCAAAGGGCTTCTTTATTACAGGGACCCATCTGTTTGTTTTAAAGTGTTTGAAGCTTAAGTTAACATGTGGAAACTTCATTGAATTATTTTTTCGAGACTGAATGGTGGCTGATGATCTACGTACTAATCATTATAGGACTGGTACTAGAGACTTGTTGAGGATTTTGTAGATCTCGTTTGACATTCGAATCAAATATAAGT</canonical>
            <polymorphic>CAAAATTGGTAGGTACAGAATCTAAACCAATTTTAAATCTTCAAAAATAGTTTTAAGTCTTACGTTCATGGTTATCCCATAAGTCATGTCGATTGTTCCAGCTATAGGACGGGGGTACCCTTTTTCTTTCGACCATTCCTCGGGAGTGAGACCACTGAAGGTATTGAACTTGCAAATTTATCTTCTGACAAACAAACTGACCTGCAGTTATAAAGTGGAATACCTTCGATAGAACCATACTTGATGATATTGTTCATTTCTGTATTGAAAAAAAAAAGGTTTGAGCTAGAAAGAGGGGGAAGCAACTAACTGTCTGTATGACGCGGAAGGGGTTTTGTCGAAAGCAATCCGCTGACGGAAATTGAGCACCCATTGTTTCTCGAAGTTATCAGTCTCGTTATTCTGATTAACCAACACACAACTATAGTTCCGGTCCTACTTCGTTGTTAAAATACAGACTAAAGAACGAGATAAAGATGATGTTCGGTTTTTAATAAAAMAAATAGAATTCACTGAAGCAGTTGTGCCGGGAAAAAAAATAAATACAATAGGTTGCTCACGGTTGTAGTCAATTATTGTGAATATATTGTTGATTGATCGTTAAAGAAATTGAAGACAATTCGAAAACAAAAAAATTCAATAATTTCGGAAAATAATTTCTCCCCACTCTAATATCATTTTTGTGAATGCAACTGACCATGGAAAATACACTTGCCAGTTGTCCCATTACGTTGGGAATTGACATACCTTAAAACTTGTATTAGAAGGGCCCGCGTCTTTTATTGTTCCGAGGTACCTCCAAAGGGCTTCTTTATTACAGGGACCCATCTGTTTGTTTTAAAGTGTTTGAAGCTTAAGTTAACATGTGGAAACTTCATTGAATTATTTTTTCGAGACTGAATGGTGGCTGATGATCTACGTACTAATCATTATAGGACTGGTACTAGAGACTTGTTGAGGATTTTGTAGATCTCGTTTGACATTCGAATCAAATATAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTGTTAAAATACAGACTAAAGAAC</pcr_primer_p1>
		<pcr_primer_p2>GTCAGTTGCATTCACAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CGTTGTTAAAATACAGACTAAAGAACGAGATAAAGATGATGTTCGGTTTTTAATAAAAAAAATAGAATTCACTGAAGCAGTTGTGCCGGGAAAAAAAATAAATACAATAGGTTGCTCACGGTTGTAGTCAATTATTGTGAATATATTGTTGATTGATCGTTAAAGAAATTGAAGACAATTCGAAAACAAAAAAATTCAATAATTTCGGAAAATAATTTCTCCCCACTCTAATATCATTTTTGTGAATGCAACTGAC</canonical_amplicon>
		<polymorphic_amplicon>CGTTGTTAAAATACAGACTAAAGAACGAGATAAAGATGATGTTCGGTTTTTAATAAAAMAAATAGAATTCACTGAAGCAGTTGTGCCGGGAAAAAAAATAAATACAATAGGTTGCTCACGGTTGTAGTCAATTATTGTGAATATATTGTTGATTGATCGTTAAAGAAATTGAAGACAATTCGAAAACAAAAAAATTCAATAATTTCGGAAAATAATTTCTCCCCACTCTAATATCATTTTTGTGAATGCAACTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19540</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>158465</contig_pos>
        <strand>+</strand>
        <context>CATGTGATTA[C/T]GATTGTGTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGGATGAGATACACAGATTGTTGCACCGGAATCAGAAACCATGTGATTA</left_flank>
        <right_flank>GATTGTGTGGTTGTTGAGTCGGGAAGGCAGTCGGCTAATTTAGAGGTTGG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTCACTTCTACGCCAAAACAAAATAAAACTCAATCAAGCATTACATGAGACTAATTGGATCGCGACCCTTTTTTGCAATTGGTTGCCTTAAAAATTGCTTTAACTTGTAGAAGTTGTATTTCGCAAAACATTTGAGTATACAACTACTGTTTATATTTTCTTTAAATTTGATTCTTTATCTTTTTTACTCGCCCAGAAGCTGATAATTGATAAATTCTGACTTTCTTCCAGAGCACCCAAGAAATCACAAATGCCCTGAGTCCCTACCTCCTCGTTTAAAAAATGGGAGTTATAGGTTTAACAGCCGTTGAGGTACTAGCCGGATGTTTAGGACTTGGTCTAGTTCTAGCCATTCTAATAGTGGTTTGCAACTGTGTTTCGACGTGCTGCGAGACTATTTCACATCGACGCAAAAAACGAAATCAGGAAAAGTTGCCAGAAGATTATGTGGATGAGATACACAGATTGTTGCACCGGAATCAGAAACCATGTGATTACGATTGTGTGGTTGTTGAGTCGGGAAGGCAGTCGGCTAATTTAGAGGTTGGTGGCTTTCGCTTGAAACAAAATAAAACTCTTCAGTTAACACCTATTTTGATATACAGTACAAACTGACAGGTAGCCTTCATTTAACTTTGAGCCAATTCATCTCGGTTTCTGTCAAAGACAGGAGAAATTGTTAACTGATAAATTGTTTATCATAATATCACAAACTTTTTATCAGTTGACACATTTTTGTTATCTTTTATTAGAGCCGAAATAATTGAGCCCAAACCTGACCGAGTTGGGTCTTCTCAGTTACAGGTATTACGGTACTAAATGTTATACATAATAATGACTGTATTATCTACCAATTTTCTATTTCAGCATATCTCCGACACTCGATTGGATCCTAAAGCTTCTACGCCCCCAGTAAATTTTCCCATAGGAAAACCCTTGGAAGAACGGGATCTAAAGTCGATTGGAACTAGCTGTACCCCATGCAAGAATAAAAGAAT</canonical>
            <polymorphic>TTGTCACTTCTACGCCAAAACAAAATAAAACTCAATCAAGCATTACATGAGACTAATTGGATCGCGACCCTTTTTTGCAATTGGTTGCCTTAAAAATTGCTTTAACTTGTAGAAGTTGTATTTCGCAAAACATTTGAGTATACAACTACTGTTTATATTTTCTTTAAATTTGATTCTTTATCTTTTTTACTCGCCCAGAAGCTGATAATTGATAAATTCTGACTTTCTTCCAGAGCACCCAAGAAATCACAAATGCCCTGAGTCCCTACCTCCTCGTTTAAAAAATGGGAGTTATAGGTTTAACAGCCGTTGAGGTACTAGCCGGATGTTTAGGACTTGGTCTAGTTCTAGCCATTCTAATAGTGGTTTGCAACTGTGTTTCGACGTGCTGCGAGACTATTTCACATCGACGCAAAAAACGAAATCAGGAAAAGTTGCCAGAAGATTATGTGGATGAGATACACAGATTGTTGCACCGGAATCAGAAACCATGTGATTAYGATTGTGTGGTTGTTGAGTCGGGAAGGCAGTCGGCTAATTTAGAGGTTGGTGGCTTTCGCTTGAAACAAAATAAAACTCTTCAGTTAACACCTATTTTGATATACAGTACAAACTGACAGGTAGCCTTCATTTAACTTTGAGCCAATTCATCTCGGTTTCTGTCAAAGACAGGAGAAATTGTTAACTGATAAATTGTTTATCATAATATCACAAACTTTTTATCAGTTGACACATTTTTGTTATCTTTTATTAGAGCCGAAATAATTGAGCCCAAACCTGACCGAGTTGGGTCTTCTCAGTTACAGGTATTACGGTACTAAATGTTATACATAATAATGACTGTATTATCTACCAATTTTCTATTTCAGCATATCTCCGACACTCGATTGGATCCTAAAGCTTCTACGCCCCCAGTAAATTTTCCCATAGGAAAACCCTTGGAAGAACGGGATCTAAAGTCGATTGGAACTAGCTGTACCCCATGCAAGAATAAAAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCTAGTTCTAGCCATTCTA</pcr_primer_p1>
		<pcr_primer_p2>CTGAAGAGTTTTATTTTGTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTGGTCTAGTTCTAGCCATTCTAATAGTGGTTTGCAACTGTGTTTCGACGTGCTGCGAGACTATTTCACATCGACGCAAAAAACGAAATCAGGAAAAGTTGCCAGAAGATTATGTGGATGAGATACACAGATTGTTGCACCGGAATCAGAAACCATGTGATTACGATTGTGTGGTTGTTGAGTCGGGAAGGCAGTCGGCTAATTTAGAGGTTGGTGGCTTTCGCTTGAAACAAAATAAAACTCTTCAG</canonical_amplicon>
		<polymorphic_amplicon>TTGGTCTAGTTCTAGCCATTCTAATAGTGGTTTGCAACTGTGTTTCGACGTGCTGCGAGACTATTTCACATCGACGCAAAAAACGAAATCAGGAAAAGTTGCCAGAAGATTATGTGGATGAGATACACAGATTGTTGCACCGGAATCAGAAACCATGTGATTAYGATTGTGTGGTTGTTGAGTCGGGAAGGCAGTCGGCTAATTTAGAGGTTGGTGGCTTTCGCTTGAAACAAAATAAAACTCTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19541</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>158492</contig_pos>
        <strand>+</strand>
        <context>AGTCGGGAAG[A/G]CAGTCGGCTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGAATCAGAAACCATGTGATTACGATTGTGTGGTTGTTGAGTCGGGAAG</left_flank>
        <right_flank>CAGTCGGCTAATTTAGAGGTTGGTGGCTTTCGCTTGAAACAAAATAAAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTCAATCAAGCATTACATGAGACTAATTGGATCGCGACCCTTTTTTGCAATTGGTTGCCTTAAAAATTGCTTTAACTTGTAGAAGTTGTATTTCGCAAAACATTTGAGTATACAACTACTGTTTATATTTTCTTTAAATTTGATTCTTTATCTTTTTTACTCGCCCAGAAGCTGATAATTGATAAATTCTGACTTTCTTCCAGAGCACCCAAGAAATCACAAATGCCCTGAGTCCCTACCTCCTCGTTTAAAAAATGGGAGTTATAGGTTTAACAGCCGTTGAGGTACTAGCCGGATGTTTAGGACTTGGTCTAGTTCTAGCCATTCTAATAGTGGTTTGCAACTGTGTTTCGACGTGCTGCGAGACTATTTCACATCGACGCAAAAAACGAAATCAGGAAAAGTTGCCAGAAGATTATGTGGATGAGATACACAGATTGTTGCACCGGAATCAGAAACCATGTGATTACGATTGTGTGGTTGTTGAGTCGGGAAGGCAGTCGGCTAATTTAGAGGTTGGTGGCTTTCGCTTGAAACAAAATAAAACTCTTCAGTTAACACCTATTTTGATATACAGTACAAACTGACAGGTAGCCTTCATTTAACTTTGAGCCAATTCATCTCGGTTTCTGTCAAAGACAGGAGAAATTGTTAACTGATAAATTGTTTATCATAATATCACAAACTTTTTATCAGTTGACACATTTTTGTTATCTTTTATTAGAGCCGAAATAATTGAGCCCAAACCTGACCGAGTTGGGTCTTCTCAGTTACAGGTATTACGGTACTAAATGTTATACATAATAATGACTGTATTATCTACCAATTTTCTATTTCAGCATATCTCCGACACTCGATTGGATCCTAAAGCTTCTACGCCCCCAGTAAATTTTCCCATAGGAAAACCCTTGGAAGAACGGGATCTAAAGTCGATTGGAACTAGCTGTACCCCATGCAAGAATAAAAGAATGGAAAGTGAAGTGGGTTGATTTATTGT</canonical>
            <polymorphic>AAACTCAATCAAGCATTACATGAGACTAATTGGATCGCGACCCTTTTTTGCAATTGGTTGCCTTAAAAATTGCTTTAACTTGTAGAAGTTGTATTTCGCAAAACATTTGAGTATACAACTACTGTTTATATTTTCTTTAAATTTGATTCTTTATCTTTTTTACTCGCCCAGAAGCTGATAATTGATAAATTCTGACTTTCTTCCAGAGCACCCAAGAAATCACAAATGCCCTGAGTCCCTACCTCCTCGTTTAAAAAATGGGAGTTATAGGTTTAACAGCCGTTGAGGTACTAGCCGGATGTTTAGGACTTGGTCTAGTTCTAGCCATTCTAATAGTGGTTTGCAACTGTGTTTCGACGTGCTGCGAGACTATTTCACATCGACGCAAAAAACGAAATCAGGAAAAGTTGCCAGAAGATTATGTGGATGAGATACACAGATTGTTGCACCGGAATCAGAAACCATGTGATTACGATTGTGTGGTTGTTGAGTCGGGAAGRCAGTCGGCTAATTTAGAGGTTGGTGGCTTTCGCTTGAAACAAAATAAAACTCTTCAGTTAACACCTATTTTGATATACAGTACAAACTGACAGGTAGCCTTCATTTAACTTTGAGCCAATTCATCTCGGTTTCTGTCAAAGACAGGAGAAATTGTTAACTGATAAATTGTTTATCATAATATCACAAACTTTTTATCAGTTGACACATTTTTGTTATCTTTTATTAGAGCCGAAATAATTGAGCCCAAACCTGACCGAGTTGGGTCTTCTCAGTTACAGGTATTACGGTACTAAATGTTATACATAATAATGACTGTATTATCTACCAATTTTCTATTTCAGCATATCTCCGACACTCGATTGGATCCTAAAGCTTCTACGCCCCCAGTAAATTTTCCCATAGGAAAACCCTTGGAAGAACGGGATCTAAAGTCGATTGGAACTAGCTGTACCCCATGCAAGAATAAAAGAATGGAAAGTGAAGTGGGTTGATTTATTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCTAGTTCTAGCCATTCTA</pcr_primer_p1>
		<pcr_primer_p2>CTGAAGAGTTTTATTTTGTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTGGTCTAGTTCTAGCCATTCTAATAGTGGTTTGCAACTGTGTTTCGACGTGCTGCGAGACTATTTCACATCGACGCAAAAAACGAAATCAGGAAAAGTTGCCAGAAGATTATGTGGATGAGATACACAGATTGTTGCACCGGAATCAGAAACCATGTGATTACGATTGTGTGGTTGTTGAGTCGGGAAGGCAGTCGGCTAATTTAGAGGTTGGTGGCTTTCGCTTGAAACAAAATAAAACTCTTCAG</canonical_amplicon>
		<polymorphic_amplicon>TTGGTCTAGTTCTAGCCATTCTAATAGTGGTTTGCAACTGTGTTTCGACGTGCTGCGAGACTATTTCACATCGACGCAAAAAACGAAATCAGGAAAAGTTGCCAGAAGATTATGTGGATGAGATACACAGATTGTTGCACCGGAATCAGAAACCATGTGATTACGATTGTGTGGTTGTTGAGTCGGGAAGRCAGTCGGCTAATTTAGAGGTTGGTGGCTTTCGCTTGAAACAAAATAAAACTCTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19542</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>158575</contig_pos>
        <strand>+</strand>
        <context>ATATACAGTA[A/C]AAACTGACAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTGAAACAAAATAAAACTCTTCAGTTAACACCTATTTTGATATACAGTA</left_flank>
        <right_flank>AAACTGACAGGTAGCCTTCATTTAACTTTGAGCCAATTCATCTCGGTTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAGTTGTATTTCGCAAAACATTTGAGTATACAACTACTGTTTATATTTTCTTTAAATTTGATTCTTTATCTTTTTTACTCGCCCAGAAGCTGATAATTGATAAATTCTGACTTTCTTCCAGAGCACCCAAGAAATCACAAATGCCCTGAGTCCCTACCTCCTCGTTTAAAAAATGGGAGTTATAGGTTTAACAGCCGTTGAGGTACTAGCCGGATGTTTAGGACTTGGTCTAGTTCTAGCCATTCTAATAGTGGTTTGCAACTGTGTTTCGACGTGCTGCGAGACTATTTCACATCGACGCAAAAAACGAAATCAGGAAAAGTTGCCAGAAGATTATGTGGATGAGATACACAGATTGTTGCACCGGAATCAGAAACCATGTGATTACGATTGTGTGGTTGTTGAGTCGGGAAGGCAGTCGGCTAATTTAGAGGTTGGTGGCTTTCGCTTGAAACAAAATAAAACTCTTCAGTTAACACCTATTTTGATATACAGTACAAACTGACAGGTAGCCTTCATTTAACTTTGAGCCAATTCATCTCGGTTTCTGTCAAAGACAGGAGAAATTGTTAACTGATAAATTGTTTATCATAATATCACAAACTTTTTATCAGTTGACACATTTTTGTTATCTTTTATTAGAGCCGAAATAATTGAGCCCAAACCTGACCGAGTTGGGTCTTCTCAGTTACAGGTATTACGGTACTAAATGTTATACATAATAATGACTGTATTATCTACCAATTTTCTATTTCAGCATATCTCCGACACTCGATTGGATCCTAAAGCTTCTACGCCCCCAGTAAATTTTCCCATAGGAAAACCCTTGGAAGAACGGGATCTAAAGTCGATTGGAACTAGCTGTACCCCATGCAAGAATAAAAGAATGGAAAGTGAAGTGGGTTGATTTATTGTAGTTTTCAGACTGTTTTTAAGAACTTTCTCTAGGAAACTATCAACACCAACACAACTAATTCACAATCCACAATAACCGCCTC</canonical>
            <polymorphic>AGAAGTTGTATTTCGCAAAACATTTGAGTATACAACTACTGTTTATATTTTCTTTAAATTTGATTCTTTATCTTTTTTACTCGCCCAGAAGCTGATAATTGATAAATTCTGACTTTCTTCCAGAGCACCCAAGAAATCACAAATGCCCTGAGTCCCTACCTCCTCGTTTAAAAAATGGGAGTTATAGGTTTAACAGCCGTTGAGGTACTAGCCGGATGTTTAGGACTTGGTCTAGTTCTAGCCATTCTAATAGTGGTTTGCAACTGTGTTTCGACGTGCTGCGAGACTATTTCACATCGACGCAAAAAACGAAATCAGGAAAAGTTGCCAGAAGATTATGTGGATGAGATACACAGATTGTTGCACCGGAATCAGAAACCATGTGATTACGATTGTGTGGTTGTTGAGTCGGGAAGGCAGTCGGCTAATTTAGAGGTTGGTGGCTTTCGCTTGAAACAAAATAAAACTCTTCAGTTAACACCTATTTTGATATACAGTAMAAACTGACAGGTAGCCTTCATTTAACTTTGAGCCAATTCATCTCGGTTTCTGTCAAAGACAGGAGAAATTGTTAACTGATAAATTGTTTATCATAATATCACAAACTTTTTATCAGTTGACACATTTTTGTTATCTTTTATTAGAGCCGAAATAATTGAGCCCAAACCTGACCGAGTTGGGTCTTCTCAGTTACAGGTATTACGGTACTAAATGTTATACATAATAATGACTGTATTATCTACCAATTTTCTATTTCAGCATATCTCCGACACTCGATTGGATCCTAAAGCTTCTACGCCCCCAGTAAATTTTCCCATAGGAAAACCCTTGGAAGAACGGGATCTAAAGTCGATTGGAACTAGCTGTACCCCATGCAAGAATAAAAGAATGGAAAGTGAAGTGGGTTGATTTATTGTAGTTTTCAGACTGTTTTTAAGAACTTTCTCTAGGAAACTATCAACACCAACACAACTAATTCACAATCCACAATAACCGCCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>292 208 206 161 133</canonical_bands>
                <polymorphic_bands>500 206 161 133</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGCTTGAAACAAAATAAAACTC</pcr_primer_p1>
		<pcr_primer_p2>TGCTGAAATAGAAAATTGGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>314</pcr_amplicon_size>
		<canonical_amplicon>CGCTTGAAACAAAATAAAACTCTTCAGTTAACACCTATTTTGATATACAGTACAAACTGACAGGTAGCCTTCATTTAACTTTGAGCCAATTCATCTCGGTTTCTGTCAAAGACAGGAGAAATTGTTAACTGATAAATTGTTTATCATAATATCACAAACTTTTTATCAGTTGACACATTTTTGTTATCTTTTATTAGAGCCGAAATAATTGAGCCCAAACCTGACCGAGTTGGGTCTTCTCAGTTACAGGTATTACGGTACTAAATGTTATACATAATAATGACTGTATTATCTACCAATTTTCTATTTCAGCA</canonical_amplicon>
		<polymorphic_amplicon>CGCTTGAAACAAAATAAAACTCTTCAGTTAACACCTATTTTGATATACAGTAMAAACTGACAGGTAGCCTTCATTTAACTTTGAGCCAATTCATCTCGGTTTCTGTCAAAGACAGGAGAAATTGTTAACTGATAAATTGTTTATCATAATATCACAAACTTTTTATCAGTTGACACATTTTTGTTATCTTTTATTAGAGCCGAAATAATTGAGCCCAAACCTGACCGAGTTGGGTCTTCTCAGTTACAGGTATTACGGTACTAAATGTTATACATAATAATGACTGTATTATCTACCAATTTTCTATTTCAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19543</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>158589</contig_pos>
        <strand>+</strand>
        <context>CTGACAGGTA[C/G]CCTTMAttta</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAACTCTTCAGTTAACACCTATTTTGATATACAGTACAAACTGACAGGTA</left_flank>
        <right_flank>CCTTCATTTAACTTTGAGCCAATTCATCTCGGTTTCTGTCAAAGACAGGA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAAAACATTTGAGTATACAACTACTGTTTATATTTTCTTTAAATTTGATTCTTTATCTTTTTTACTCGCCCAGAAGCTGATAATTGATAAATTCTGACTTTCTTCCAGAGCACCCAAGAAATCACAAATGCCCTGAGTCCCTACCTCCTCGTTTAAAAAATGGGAGTTATAGGTTTAACAGCCGTTGAGGTACTAGCCGGATGTTTAGGACTTGGTCTAGTTCTAGCCATTCTAATAGTGGTTTGCAACTGTGTTTCGACGTGCTGCGAGACTATTTCACATCGACGCAAAAAACGAAATCAGGAAAAGTTGCCAGAAGATTATGTGGATGAGATACACAGATTGTTGCACCGGAATCAGAAACCATGTGATTACGATTGTGTGGTTGTTGAGTCGGGAAGGCAGTCGGCTAATTTAGAGGTTGGTGGCTTTCGCTTGAAACAAAATAAAACTCTTCAGTTAACACCTATTTTGATATACAGTACAAACTGACAGGTAGCCTTCATTTAACTTTGAGCCAATTCATCTCGGTTTCTGTCAAAGACAGGAGAAATTGTTAACTGATAAATTGTTTATCATAATATCACAAACTTTTTATCAGTTGACACATTTTTGTTATCTTTTATTAGAGCCGAAATAATTGAGCCCAAACCTGACCGAGTTGGGTCTTCTCAGTTACAGGTATTACGGTACTAAATGTTATACATAATAATGACTGTATTATCTACCAATTTTCTATTTCAGCATATCTCCGACACTCGATTGGATCCTAAAGCTTCTACGCCCCCAGTAAATTTTCCCATAGGAAAACCCTTGGAAGAACGGGATCTAAAGTCGATTGGAACTAGCTGTACCCCATGCAAGAATAAAAGAATGGAAAGTGAAGTGGGTTGATTTATTGTAGTTTTCAGACTGTTTTTAAGAACTTTCTCTAGGAAACTATCAACACCAACACAACTAATTCACAATCCACAATAACCGCCTCGGAGAATGGAGAGG</canonical>
            <polymorphic>GCAAAACATTTGAGTATACAACTACTGTTTATATTTTCTTTAAATTTGATTCTTTATCTTTTTTACTCGCCCAGAAGCTGATAATTGATAAATTCTGACTTTCTTCCAGAGCACCCAAGAAATCACAAATGCCCTGAGTCCCTACCTCCTCGTTTAAAAAATGGGAGTTATAGGTTTAACAGCCGTTGAGGTACTAGCCGGATGTTTAGGACTTGGTCTAGTTCTAGCCATTCTAATAGTGGTTTGCAACTGTGTTTCGACGTGCTGCGAGACTATTTCACATCGACGCAAAAAACGAAATCAGGAAAAGTTGCCAGAAGATTATGTGGATGAGATACACAGATTGTTGCACCGGAATCAGAAACCATGTGATTACGATTGTGTGGTTGTTGAGTCGGGAAGGCAGTCGGCTAATTTAGAGGTTGGTGGCTTTCGCTTGAAACAAAATAAAACTCTTCAGTTAACACCTATTTTGATATACAGTACAAACTGACAGGTASCCTTCATTTAACTTTGAGCCAATTCATCTCGGTTTCTGTCAAAGACAGGAGAAATTGTTAACTGATAAATTGTTTATCATAATATCACAAACTTTTTATCAGTTGACACATTTTTGTTATCTTTTATTAGAGCCGAAATAATTGAGCCCAAACCTGACCGAGTTGGGTCTTCTCAGTTACAGGTATTACGGTACTAAATGTTATACATAATAATGACTGTATTATCTACCAATTTTCTATTTCAGCATATCTCCGACACTCGATTGGATCCTAAAGCTTCTACGCCCCCAGTAAATTTTCCCATAGGAAAACCCTTGGAAGAACGGGATCTAAAGTCGATTGGAACTAGCTGTACCCCATGCAAGAATAAAAGAATGGAAAGTGAAGTGGGTTGATTTATTGTAGTTTTCAGACTGTTTTTAAGAACTTTCTCTAGGAAACTATCAACACCAACACAACTAATTCACAATCCACAATAACCGCCTCGGAGAATGGAGAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>183 151 130 114 105 77 73 71 30 19 18 15 14</canonical_bands>
                <polymorphic_bands>183 151 130 114 105 89 77 73 30 19 15 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATAAAACTCTTCAGTTAACACC</pcr_primer_p1>
		<pcr_primer_p2>TGCTGAAATAGAAAATTGGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>304</pcr_amplicon_size>
		<canonical_amplicon>AAAATAAAACTCTTCAGTTAACACCTATTTTGATATACAGTACAAACTGACAGGTAGCCTTCATTTAACTTTGAGCCAATTCATCTCGGTTTCTGTCAAAGACAGGAGAAATTGTTAACTGATAAATTGTTTATCATAATATCACAAACTTTTTATCAGTTGACACATTTTTGTTATCTTTTATTAGAGCCGAAATAATTGAGCCCAAACCTGACCGAGTTGGGTCTTCTCAGTTACAGGTATTACGGTACTAAATGTTATACATAATAATGACTGTATTATCTACCAATTTTCTATTTCAGCA</canonical_amplicon>
		<polymorphic_amplicon>AAAATAAAACTCTTCAGTTAACACCTATTTTGATATACAGTACAAACTGACAGGTASCCTTCATTTAACTTTGAGCCAATTCATCTCGGTTTCTGTCAAAGACAGGAGAAATTGTTAACTGATAAATTGTTTATCATAATATCACAAACTTTTTATCAGTTGACACATTTTTGTTATCTTTTATTAGAGCCGAAATAATTGAGCCCAAACCTGACCGAGTTGGGTCTTCTCAGTTACAGGTATTACGGTACTAAATGTTATACATAATAATGACTGTATTATCTACCAATTTTCTATTTCAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19544</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>159904</contig_pos>
        <strand>+</strand>
        <context>CAATCTGGTA[A/G]ACTACTGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCATCATAGTCTTTGGGGAATGGGGATTTGAGGTGCCACCAATCTGGTA</left_flank>
        <right_flank>ACTACTGAAACTTGTAAAATTGGTTTCCAAGAATCAAACCTGAATTCCGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAGTTGACAACTTTAATGTATTTTAGACAGGAACCGAGATAAATTGGCTCAAAGCTGAAAGTTAGGCGATGTAGTTAGTACTGGCCAAAAGTTAGAAAACTGATATGCTTGATTACACGATGTTCAAAGATCGGTTTCTGTGAAACAGGTTCTCCCATTTATACTTTTTCCCAGTAATCATAAGTAAGTCTAAGACACCAGGTGTTGATAAGAATATCTAATATGATCATGACGACAATATTGTTTTTCCGATTTCACCGAAATGGTTGAAGAAAAAATAAATTCATTTGATGAGACATAAGCAGGAAATAATTAATAATGAGACAGGATTCGTTGAGTGAATATTCACAATTGGGTGCTCCCATGATTGCTCGGAATTTGCTTTTATTCGTTGATGATTCTCATCGGTCTGAGGATTCGTATATGATGAGGACGCCCCTCTGACATGTCATCATAGTCTTTGGGGAATGGGGATTTGAGGTGCCACCAATCTGGTAAACTACTGAAACTTGTAAAATTGGTTTCCAAGAATCAAACCTGAATTCCGTAAAACCTGTATTAGAAGGGTCTTTAATTAACTTTAAGCAGATTTATCTCGGTTTCTGTCAAAGATACAAAAAAGTTATCAACTGATAAATTGTTTAGCATAATATCAGCAACATTTTATCAGTTGACACATTTTTGATATCATGCATAGGAAAGAAGATAAATTAGTTCAAACTGGACAGTGTGGAGGCCCTTCTATCTTGTAACAAAAAAATACGCTCACCTGTCCACAGTAACCAAAATAACGCATAGAAGAAAACAGAGAATGAATATTGTTGATGACTTCATTTCACAATCAGCTGATATCTTCTAACCTTTCAGAACACTGTTTTATATGATTCGATGGATTCTAAAAAACATAGGCTTTAGAGAAAAAGAGGAAAAAAATTGGTAGGAGAAGTGATAATGTTGAAAACATTCTCAGTTTTTTTGCAGAATAATGTCCCCTGAAC</canonical>
            <polymorphic>TTCAGTTGACAACTTTAATGTATTTTAGACAGGAACCGAGATAAATTGGCTCAAAGCTGAAAGTTAGGCGATGTAGTTAGTACTGGCCAAAAGTTAGAAAACTGATATGCTTGATTACACGATGTTCAAAGATCGGTTTCTGTGAAACAGGTTCTCCCATTTATACTTTTTCCCAGTAATCATAAGTAAGTCTAAGACACCAGGTGTTGATAAGAATATCTAATATGATCATGACGACAATATTGTTTTTCCGATTTCACCGAAATGGTTGAAGAAAAAATAAATTCATTTGATGAGACATAAGCAGGAAATAATTAATAATGAGACAGGATTCGTTGAGTGAATATTCACAATTGGGTGCTCCCATGATTGCTCGGAATTTGCTTTTATTCGTTGATGATTCTCATCGGTCTGAGGATTCGTATATGATGAGGACGCCCCTCTGACATGTCATCATAGTCTTTGGGGAATGGGGATTTGAGGTGCCACCAATCTGGTARACTACTGAAACTTGTAAAATTGGTTTCCAAGAATCAAACCTGAATTCCGTAAAACCTGTATTAGAAGGGTCTTTAATTAACTTTAAGCAGATTTATCTCGGTTTCTGTCAAAGATACAAAAAAGTTATCAACTGATAAATTGTTTAGCATAATATCAGCAACATTTTATCAGTTGACACATTTTTGATATCATGCATAGGAAAGAAGATAAATTAGTTCAAACTGGACAGTGTGGAGGCCCTTCTATCTTGTAACAAAAAAATACGCTCACCTGTCCACAGTAACCAAAATAACGCATAGAAGAAAACAGAGAATGAATATTGTTGATGACTTCATTTCACAATCAGCTGATATCTTCTAACCTTTCAGAACACTGTTTTATATGATTCGATGGATTCTAAAAAACATAGGCTTTAGAGAAAAAGAGGAAAAAAATTGGTAGGAGAAGTGATAATGTTGAAAACATTCTCAGTTTTTTTGCAGAATAATGTCCCCTGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGATTCGTATATGATGAGGAC</pcr_primer_p1>
		<pcr_primer_p2>CGTTATTTTGGTTACTGTGGAC</pcr_primer_p2>
		<pcr_amplicon_size>381</pcr_amplicon_size>
		<canonical_amplicon>AGGATTCGTATATGATGAGGACGCCCCTCTGACATGTCATCATAGTCTTTGGGGAATGGGGATTTGAGGTGCCACCAATCTGGTAAACTACTGAAACTTGTAAAATTGGTTTCCAAGAATCAAACCTGAATTCCGTAAAACCTGTATTAGAAGGGTCTTTAATTAACTTTAAGCAGATTTATCTCGGTTTCTGTCAAAGATACAAAAAAGTTATCAACTGATAAATTGTTTAGCATAATATCAGCAACATTTTATCAGTTGACACATTTTTGATATCATGCATAGGAAAGAAGATAAATTAGTTCAAACTGGACAGTGTGGAGGCCCTTCTATCTTGTAACAAAAAAATACGCTCACCTGTCCACAGTAACCAAAATAACG</canonical_amplicon>
		<polymorphic_amplicon>AGGATTCGTATATGATGAGGACGCCCCTCTGACATGTCATCATAGTCTTTGGGGAATGGGGATTTGAGGTGCCACCAATCTGGTARACTACTGAAACTTGTAAAATTGGTTTCCAAGAATCAAACCTGAATTCCGTAAAACCTGTATTAGAAGGGTCTTTAATTAACTTTAAGCAGATTTATCTCGGTTTCTGTCAAAGATACAAAAAAGTTATCAACTGATAAATTGTTTAGCATAATATCAGCAACATTTTATCAGTTGACACATTTTTGATATCATGCATAGGAAAGAAGATAAATTAGTTCAAACTGGACAGTGTGGAGGCCCTTCTATCTTGTAACAAAAAAATACGCTCACCTGTCCACAGTAACCAAAATAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19545</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>159757</contig_pos>
        <strand>+</strand>
        <context>AATATTCACA[A/C]TTGGGTGCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGCAGGAAATAATTAATAATGAGACAGGATTCGTTGAGTGAATATTCACA</left_flank>
        <right_flank>TTGGGTGCTCCCATGATTGCTCGGAATTTGCTTTTATTCGTTGATGATTC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGACTTTTTCCAAGACTCTTATGCAATCAATGTTTAGCAGGTCTTAAAATACTTTTAACTTTGAGCTAAATTATCTCGGCCCCTTTGAAAGATATCAAAAATGTATCAACAGATAAAATATTTGTGGTATTAGGATGAACAATTTTTCAGTTGACAACTTTAATGTATTTTAGACAGGAACCGAGATAAATTGGCTCAAAGCTGAAAGTTAGGCGATGTAGTTAGTACTGGCCAAAAGTTAGAAAACTGATATGCTTGATTACACGATGTTCAAAGATCGGTTTCTGTGAAACAGGTTCTCCCATTTATACTTTTTCCCAGTAATCATAAGTAAGTCTAAGACACCAGGTGTTGATAAGAATATCTAATATGATCATGACGACAATATTGTTTTTCCGATTTCACCGAAATGGTTGAAGAAAAAATAAATTCATTTGATGAGACATAAGCAGGAAATAATTAATAATGAGACAGGATTCGTTGAGTGAATATTCACAATTGGGTGCTCCCATGATTGCTCGGAATTTGCTTTTATTCGTTGATGATTCTCATCGGTCTGAGGATTCGTATATGATGAGGACGCCCCTCTGACATGTCATCATAGTCTTTGGGGAATGGGGATTTGAGGTGCCACCAATCTGGTAAACTACTGAAACTTGTAAAATTGGTTTCCAAGAATCAAACCTGAATTCCGTAAAACCTGTATTAGAAGGGTCTTTAATTAACTTTAAGCAGATTTATCTCGGTTTCTGTCAAAGATACAAAAAAGTTATCAACTGATAAATTGTTTAGCATAATATCAGCAACATTTTATCAGTTGACACATTTTTGATATCATGCATAGGAAAGAAGATAAATTAGTTCAAACTGGACAGTGTGGAGGCCCTTCTATCTTGTAACAAAAAAATACGCTCACCTGTCCACAGTAACCAAAATAACGCATAGAAGAAAACAGAGAATGAATATTGTTGATGACTTCATTTCACAATCAGCTGATA</canonical>
            <polymorphic>AAAGACTTTTTCCAAGACTCTTATGCAATCAATGTTTAGCAGGTCTTAAAATACTTTTAACTTTGAGCTAAATTATCTCGGCCCCTTTGAAAGATATCAAAAATGTATCAACAGATAAAATATTTGTGGTATTAGGATGAACAATTTTTCAGTTGACAACTTTAATGTATTTTAGACAGGAACCGAGATAAATTGGCTCAAAGCTGAAAGTTAGGCGATGTAGTTAGTACTGGCCAAAAGTTAGAAAACTGATATGCTTGATTACACGATGTTCAAAGATCGGTTTCTGTGAAACAGGTTCTCCCATTTATACTTTTTCCCAGTAATCATAAGTAAGTCTAAGACACCAGGTGTTGATAAGAATATCTAATATGATCATGACGACAATATTGTTTTTCCGATTTCACCGAAATGGTTGAAGAAAAAATAAATTCATTTGATGAGACATAAGCAGGAAATAATTAATAATGAGACAGGATTCGTTGAGTGAATATTCACAMTTGGGTGCTCCCATGATTGCTCGGAATTTGCTTTTATTCGTTGATGATTCTCATCGGTCTGAGGATTCGTATATGATGAGGACGCCCCTCTGACATGTCATCATAGTCTTTGGGGAATGGGGATTTGAGGTGCCACCAATCTGGTAAACTACTGAAACTTGTAAAATTGGTTTCCAAGAATCAAACCTGAATTCCGTAAAACCTGTATTAGAAGGGTCTTTAATTAACTTTAAGCAGATTTATCTCGGTTTCTGTCAAAGATACAAAAAAGTTATCAACTGATAAATTGTTTAGCATAATATCAGCAACATTTTATCAGTTGACACATTTTTGATATCATGCATAGGAAAGAAGATAAATTAGTTCAAACTGGACAGTGTGGAGGCCCTTCTATCTTGTAACAAAAAAATACGCTCACCTGTCCACAGTAACCAAAATAACGCATAGAAGAAAACAGAGAATGAATATTGTTGATGACTTCATTTCACAATCAGCTGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>239 143 140 73 72 70 63 48 39 32 30 26 25</canonical_bands>
                <polymorphic_bands>239 143 140 73 72 70 65 63 48 32 30 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTCATTTGATGAGACATAAGC</pcr_primer_p1>
		<pcr_primer_p2>GAAACCAATTTTACAAGTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATTCATTTGATGAGACATAAGCAGGAAATAATTAATAATGAGACAGGATTCGTTGAGTGAATATTCACAATTGGGTGCTCCCATGATTGCTCGGAATTTGCTTTTATTCGTTGATGATTCTCATCGGTCTGAGGATTCGTATATGATGAGGACGCCCCTCTGACATGTCATCATAGTCTTTGGGGAATGGGGATTTGAGGTGCCACCAATCTGGTAAACTACTGAAACTTGTAAAATTGGTTTC</canonical_amplicon>
		<polymorphic_amplicon>AATTCATTTGATGAGACATAAGCAGGAAATAATTAATAATGAGACAGGATTCGTTGAGTGAATATTCACAMTTGGGTGCTCCCATGATTGCTCGGAATTTGCTTTTATTCGTTGATGATTCTCATCGGTCTGAGGATTCGTATATGATGAGGACGCCCCTCTGACATGTCATCATAGTCTTTGGGGAATGGGGATTTGAGGTGCCACCAATCTGGTAAACTACTGAAACTTGTAAAATTGGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19546</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>159642</contig_pos>
        <strand>+</strand>
        <context>ATCATGACGA[C/G]AATATTGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAGTCTAAGACACCAGGTGTTGATAAGAATATCTAATATGATCATGACGA</left_flank>
        <right_flank>AATATTGTTTTTCCGATTTCACCGAAATGGTTGAAGAAAAAATAAATTCA</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCACTTTTTGATACGGTCATGATGCCTTCGTTAGACACTACTACAACTGAGGATACCACAGGAACAGCGTGAGTCTTTTCTTGAATTAAAAGCCAACGTTTTAAATTCACGAAAAGACTTTTTCCAAGACTCTTATGCAATCAATGTTTAGCAGGTCTTAAAATACTTTTAACTTTGAGCTAAATTATCTCGGCCCCTTTGAAAGATATCAAAAATGTATCAACAGATAAAATATTTGTGGTATTAGGATGAACAATTTTTCAGTTGACAACTTTAATGTATTTTAGACAGGAACCGAGATAAATTGGCTCAAAGCTGAAAGTTAGGCGATGTAGTTAGTACTGGCCAAAAGTTAGAAAACTGATATGCTTGATTACACGATGTTCAAAGATCGGTTTCTGTGAAACAGGTTCTCCCATTTATACTTTTTCCCAGTAATCATAAGTAAGTCTAAGACACCAGGTGTTGATAAGAATATCTAATATGATCATGACGACAATATTGTTTTTCCGATTTCACCGAAATGGTTGAAGAAAAAATAAATTCATTTGATGAGACATAAGCAGGAAATAATTAATAATGAGACAGGATTCGTTGAGTGAATATTCACAATTGGGTGCTCCCATGATTGCTCGGAATTTGCTTTTATTCGTTGATGATTCTCATCGGTCTGAGGATTCGTATATGATGAGGACGCCCCTCTGACATGTCATCATAGTCTTTGGGGAATGGGGATTTGAGGTGCCACCAATCTGGTAAACTACTGAAACTTGTAAAATTGGTTTCCAAGAATCAAACCTGAATTCCGTAAAACCTGTATTAGAAGGGTCTTTAATTAACTTTAAGCAGATTTATCTCGGTTTCTGTCAAAGATACAAAAAAGTTATCAACTGATAAATTGTTTAGCATAATATCAGCAACATTTTATCAGTTGACACATTTTTGATATCATGCATAGGAAAGAAGATAAATTAGTTCAAACTGGACAGTGTGGAGG</canonical>
            <polymorphic>AATTCACTTTTTGATACGGTCATGATGCCTTCGTTAGACACTACTACAACTGAGGATACCACAGGAACAGCGTGAGTCTTTTCTTGAATTAAAAGCCAACGTTTTAAATTCACGAAAAGACTTTTTCCAAGACTCTTATGCAATCAATGTTTAGCAGGTCTTAAAATACTTTTAACTTTGAGCTAAATTATCTCGGCCCCTTTGAAAGATATCAAAAATGTATCAACAGATAAAATATTTGTGGTATTAGGATGAACAATTTTTCAGTTGACAACTTTAATGTATTTTAGACAGGAACCGAGATAAATTGGCTCAAAGCTGAAAGTTAGGCGATGTAGTTAGTACTGGCCAAAAGTTAGAAAACTGATATGCTTGATTACACGATGTTCAAAGATCGGTTTCTGTGAAACAGGTTCTCCCATTTATACTTTTTCCCAGTAATCATAAGTAAGTCTAAGACACCAGGTGTTGATAAGAATATCTAATATGATCATGACGASAATATTGTTTTTCCGATTTCACCGAAATGGTTGAAGAAAAAATAAATTCATTTGATGAGACATAAGCAGGAAATAATTAATAATGAGACAGGATTCGTTGAGTGAATATTCACAATTGGGTGCTCCCATGATTGCTCGGAATTTGCTTTTATTCGTTGATGATTCTCATCGGTCTGAGGATTCGTATATGATGAGGACGCCCCTCTGACATGTCATCATAGTCTTTGGGGAATGGGGATTTGAGGTGCCACCAATCTGGTAAACTACTGAAACTTGTAAAATTGGTTTCCAAGAATCAAACCTGAATTCCGTAAAACCTGTATTAGAAGGGTCTTTAATTAACTTTAAGCAGATTTATCTCGGTTTCTGTCAAAGATACAAAAAAGTTATCAACTGATAAATTGTTTAGCATAATATCAGCAACATTTTATCAGTTGACACATTTTTGATATCATGCATAGGAAAGAAGATAAATTAGTTCAAACTGGACAGTGTGGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTCTCCCATTTATACTTTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATCAACGAATAAAAGCAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTTCTCCCATTTATACTTTTTCCCAGTAATCATAAGTAAGTCTAAGACACCAGGTGTTGATAAGAATATCTAATATGATCATGACGACAATATTGTTTTTCCGATTTCACCGAAATGGTTGAAGAAAAAATAAATTCATTTGATGAGACATAAGCAGGAAATAATTAATAATGAGACAGGATTCGTTGAGTGAATATTCACAATTGGGTGCTCCCATGATTGCTCGGAATTTGCTTTTATTCGTTGAT</canonical_amplicon>
		<polymorphic_amplicon>GGTTCTCCCATTTATACTTTTTCCCAGTAATCATAAGTAAGTCTAAGACACCAGGTGTTGATAAGAATATCTAATATGATCATGACGASAATATTGTTTTTCCGATTTCACCGAAATGGTTGAAGAAAAAATAAATTCATTTGATGAGACATAAGCAGGAAATAATTAATAATGAGACAGGATTCGTTGAGTGAATATTCACAATTGGGTGCTCCCATGATTGCTCGGAATTTGCTTTTATTCGTTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19547</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>176045</contig_pos>
        <strand>+</strand>
        <context>CTAGGATTTT[C/T]GAATTTTCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTGCACTAGACTTTTCAGCGAATCTTTCGATCCATCTCCTAGGATTTT</left_flank>
        <right_flank>GAATTTTCTCTTTTTAGATTTCGTATACTTCTAGGCAATCAATAAATGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGAAGAACACGGGAATCTTCAATGATAGTCATCTGACGCAGGACTCGACTCCATCCTCCTGCACGGGACAGCCTTCTTACAGAGAACGAATAAAAAAATTGAGGAAGACACGCACGGATTCCCGTTGGTTCGAAATCAACGAGGAAGTGGTGAAACTTCGATGCGGACCTCAGTTGAAGTAAGGATTCTAATGGGTGGAACAGTAGGCTTAGGTGTTAGGTATTGGTGATGGGTATATTTGTTGTAACGCTGTATTGGTAGTTGGTGTCGGTGCTTTCTTTTTTTGGGACAGTGAATCTGGAATCTTTTTTTTTTCTTTCTCGGCGTCAGCATATTTTTAGTTTGCTTTTTTCCTTCTTCATCATCTTCTTCGCATGGATCTGTATTCTAGAGATGCCTAGATTCCGTATTCTGGATTCCGGGAAAATATGAGAATCTGCAATACTTTTCTGCACTAGACTTTTCAGCGAATCTTTCGATCCATCTCCTAGGATTTTCGAATTTTCTCTTTTTAGATTTCGTATACTTCTAGGCAATCAATAAATGTTTTGATTGATGAAAACATTCTAAAGTTCAAGATGCAACTAATTCGCATGAGCCATATGATTAACTAATATTGACTAGTCTCTGGAAGCTGAAAACGACTAGAATTCAATGAAGGAACTGCTCAGAATCAAGACATACTTCTTTTTTCTGCAAGTCGAGAGTTCTAAACTCACGATCTTTAGGATTTCCGTAGTTCATTTTTGAATCTATACATTATTCTCGGAAATCCGAACGATCTAGAATTTCTTATACAGTTATCGCTGATAAGTTATTGTTATTCTCTCATTGGTCATGTTTGATATTTCCGTCCATTCAAGCTCATTTTTACTTTCAACCTTCTGAATCCCTAAGTTTTACACTATTGTCATGTTCTTCTCATCTTCTGTTCAGACATTCTATGAGCGAAATACCAAGTAAAGCTTGAAGGTGCAGTGCAAACAGTTGAGATTCAT</canonical>
            <polymorphic>TGTGAAGAACACGGGAATCTTCAATGATAGTCATCTGACGCAGGACTCGACTCCATCCTCCTGCACGGGACAGCCTTCTTACAGAGAACGAATAAAAAAATTGAGGAAGACACGCACGGATTCCCGTTGGTTCGAAATCAACGAGGAAGTGGTGAAACTTCGATGCGGACCTCAGTTGAAGTAAGGATTCTAATGGGTGGAACAGTAGGCTTAGGTGTTAGGTATTGGTGATGGGTATATTTGTTGTAACGCTGTATTGGTAGTTGGTGTCGGTGCTTTCTTTTTTTGGGACAGTGAATCTGGAATCTTTTTTTTTTCTTTCTCGGCGTCAGCATATTTTTAGTTTGCTTTTTTCCTTCTTCATCATCTTCTTCGCATGGATCTGTATTCTAGAGATGCCTAGATTCCGTATTCTGGATTCCGGGAAAATATGAGAATCTGCAATACTTTTCTGCACTAGACTTTTCAGCGAATCTTTCGATCCATCTCCTAGGATTTTYGAATTTTCTCTTTTTAGATTTCGTATACTTCTAGGCAATCAATAAATGTTTTGATTGATGAAAACATTCTAAAGTTCAAGATGCAACTAATTCGCATGAGCCATATGATTAACTAATATTGACTAGTCTCTGGAAGCTGAAAACGACTAGAATTCAATGAAGGAACTGCTCAGAATCAAGACATACTTCTTTTTTCTGCAAGTCGAGAGTTCTAAACTCACGATCTTTAGGATTTCCGTAGTTCATTTTTGAATCTATACATTATTCTCGGAAATCCGAACGATCTAGAATTTCTTATACAGTTATCGCTGATAAGTTATTGTTATTCTCTCATTGGTCATGTTTGATATTTCCGTCCATTCAAGCTCATTTTTACTTTCAACCTTCTGAATCCCTAAGTTTTACACTATTGTCATGTTCTTCTCATCTTCTGTTCAGACATTCTATGAGCGAAATACCAAGTAAAGCTTGAAGGTGCAGTGCAAACAGTTGAGATTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 367 132</canonical_bands>
                <polymorphic_bands>868 132</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>318 296 204 85 48 28 21</canonical_bands>
                <polymorphic_bands>318 296 225 85 48 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTGCAATACTTTTCTGCACTA</pcr_primer_p1>
		<pcr_primer_p2>GTATGTCTTGATTCTGAGCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTGCAATACTTTTCTGCACTAGACTTTTCAGCGAATCTTTCGATCCATCTCCTAGGATTTTCGAATTTTCTCTTTTTAGATTTCGTATACTTCTAGGCAATCAATAAATGTTTTGATTGATGAAAACATTCTAAAGTTCAAGATGCAACTAATTCGCATGAGCCATATGATTAACTAATATTGACTAGTCTCTGGAAGCTGAAAACGACTAGAATTCAATGAAGGAACTGCTCAGAATCAAGACATAC</canonical_amplicon>
		<polymorphic_amplicon>ATCTGCAATACTTTTCTGCACTAGACTTTTCAGCGAATCTTTCGATCCATCTCCTAGGATTTTYGAATTTTCTCTTTTTAGATTTCGTATACTTCTAGGCAATCAATAAATGTTTTGATTGATGAAAACATTCTAAAGTTCAAGATGCAACTAATTCGCATGAGCCATATGATTAACTAATATTGACTAGTCTCTGGAAGCTGAAAACGACTAGAATTCAATGAAGGAACTGCTCAGAATCAAGACATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19548</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>176111</contig_pos>
        <strand>+</strand>
        <context>TGATGAAAAC[A/T]TTCTAAAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGATTTCGTATACTTCTAGGCAATCAATAAATGTTTTGATTGATGAAAAC</left_flank>
        <right_flank>TTCTAAAGTTCAAGATGCAACTAATTCGCATGAGCCATATGATTAACTAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGACAGCCTTCTTACAGAGAACGAATAAAAAAATTGAGGAAGACACGCACGGATTCCCGTTGGTTCGAAATCAACGAGGAAGTGGTGAAACTTCGATGCGGACCTCAGTTGAAGTAAGGATTCTAATGGGTGGAACAGTAGGCTTAGGTGTTAGGTATTGGTGATGGGTATATTTGTTGTAACGCTGTATTGGTAGTTGGTGTCGGTGCTTTCTTTTTTTGGGACAGTGAATCTGGAATCTTTTTTTTTTCTTTCTCGGCGTCAGCATATTTTTAGTTTGCTTTTTTCCTTCTTCATCATCTTCTTCGCATGGATCTGTATTCTAGAGATGCCTAGATTCCGTATTCTGGATTCCGGGAAAATATGAGAATCTGCAATACTTTTCTGCACTAGACTTTTCAGCGAATCTTTCGATCCATCTCCTAGGATTTTCGAATTTTCTCTTTTTAGATTTCGTATACTTCTAGGCAATCAATAAATGTTTTGATTGATGAAAACATTCTAAAGTTCAAGATGCAACTAATTCGCATGAGCCATATGATTAACTAATATTGACTAGTCTCTGGAAGCTGAAAACGACTAGAATTCAATGAAGGAACTGCTCAGAATCAAGACATACTTCTTTTTTCTGCAAGTCGAGAGTTCTAAACTCACGATCTTTAGGATTTCCGTAGTTCATTTTTGAATCTATACATTATTCTCGGAAATCCGAACGATCTAGAATTTCTTATACAGTTATCGCTGATAAGTTATTGTTATTCTCTCATTGGTCATGTTTGATATTTCCGTCCATTCAAGCTCATTTTTACTTTCAACCTTCTGAATCCCTAAGTTTTACACTATTGTCATGTTCTTCTCATCTTCTGTTCAGACATTCTATGAGCGAAATACCAAGTAAAGCTTGAAGGTGCAGTGCAAACAGTTGAGATTCATTGTTTTAGAAGTTTACGGCAGAACTAAATATTCTGATCTAGTCATTACGGCGAATAAAAAGTAGTA</canonical>
            <polymorphic>GGGACAGCCTTCTTACAGAGAACGAATAAAAAAATTGAGGAAGACACGCACGGATTCCCGTTGGTTCGAAATCAACGAGGAAGTGGTGAAACTTCGATGCGGACCTCAGTTGAAGTAAGGATTCTAATGGGTGGAACAGTAGGCTTAGGTGTTAGGTATTGGTGATGGGTATATTTGTTGTAACGCTGTATTGGTAGTTGGTGTCGGTGCTTTCTTTTTTTGGGACAGTGAATCTGGAATCTTTTTTTTTTCTTTCTCGGCGTCAGCATATTTTTAGTTTGCTTTTTTCCTTCTTCATCATCTTCTTCGCATGGATCTGTATTCTAGAGATGCCTAGATTCCGTATTCTGGATTCCGGGAAAATATGAGAATCTGCAATACTTTTCTGCACTAGACTTTTCAGCGAATCTTTCGATCCATCTCCTAGGATTTTCGAATTTTCTCTTTTTAGATTTCGTATACTTCTAGGCAATCAATAAATGTTTTGATTGATGAAAACWTTCTAAAGTTCAAGATGCAACTAATTCGCATGAGCCATATGATTAACTAATATTGACTAGTCTCTGGAAGCTGAAAACGACTAGAATTCAATGAAGGAACTGCTCAGAATCAAGACATACTTCTTTTTTCTGCAAGTCGAGAGTTCTAAACTCACGATCTTTAGGATTTCCGTAGTTCATTTTTGAATCTATACATTATTCTCGGAAATCCGAACGATCTAGAATTTCTTATACAGTTATCGCTGATAAGTTATTGTTATTCTCTCATTGGTCATGTTTGATATTTCCGTCCATTCAAGCTCATTTTTACTTTCAACCTTCTGAATCCCTAAGTTTTACACTATTGTCATGTTCTTCTCATCTTCTGTTCAGACATTCTATGAGCGAAATACCAAGTAAAGCTTGAAGGTGCAGTGCAAACAGTTGAGATTCATTGTTTTAGAAGTTTACGGCAGAACTAAATATTCTGATCTAGTCATTACGGCGAATAAAAAGTAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTGCAATACTTTTCTGCACTA</pcr_primer_p1>
		<pcr_primer_p2>GTATGTCTTGATTCTGAGCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTGCAATACTTTTCTGCACTAGACTTTTCAGCGAATCTTTCGATCCATCTCCTAGGATTTTCGAATTTTCTCTTTTTAGATTTCGTATACTTCTAGGCAATCAATAAATGTTTTGATTGATGAAAACATTCTAAAGTTCAAGATGCAACTAATTCGCATGAGCCATATGATTAACTAATATTGACTAGTCTCTGGAAGCTGAAAACGACTAGAATTCAATGAAGGAACTGCTCAGAATCAAGACATAC</canonical_amplicon>
		<polymorphic_amplicon>ATCTGCAATACTTTTCTGCACTAGACTTTTCAGCGAATCTTTCGATCCATCTCCTAGGATTTTCGAATTTTCTCTTTTTAGATTTCGTATACTTCTAGGCAATCAATAAATGTTTTGATTGATGAAAACWTTCTAAAGTTCAAGATGCAACTAATTCGCATGAGCCATATGATTAACTAATATTGACTAGTCTCTGGAAGCTGAAAACGACTAGAATTCAATGAAGGAACTGCTCAGAATCAAGACATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19549</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>176125</contig_pos>
        <strand>+</strand>
        <context>TAAAGTTCAA[A/G]ATGCAACTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTAGGCAATCAATAAATGTTTTGATTGATGAAAACATTCTAAAGTTCAA</left_flank>
        <right_flank>ATGCAACTAATTCGCATGAGCCATATGATTAACTAATATTGACTAGTCTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGAGAACGAATAAAAAAATTGAGGAAGACACGCACGGATTCCCGTTGGTTCGAAATCAACGAGGAAGTGGTGAAACTTCGATGCGGACCTCAGTTGAAGTAAGGATTCTAATGGGTGGAACAGTAGGCTTAGGTGTTAGGTATTGGTGATGGGTATATTTGTTGTAACGCTGTATTGGTAGTTGGTGTCGGTGCTTTCTTTTTTTGGGACAGTGAATCTGGAATCTTTTTTTTTTCTTTCTCGGCGTCAGCATATTTTTAGTTTGCTTTTTTCCTTCTTCATCATCTTCTTCGCATGGATCTGTATTCTAGAGATGCCTAGATTCCGTATTCTGGATTCCGGGAAAATATGAGAATCTGCAATACTTTTCTGCACTAGACTTTTCAGCGAATCTTTCGATCCATCTCCTAGGATTTTCGAATTTTCTCTTTTTAGATTTCGTATACTTCTAGGCAATCAATAAATGTTTTGATTGATGAAAACATTCTAAAGTTCAAGATGCAACTAATTCGCATGAGCCATATGATTAACTAATATTGACTAGTCTCTGGAAGCTGAAAACGACTAGAATTCAATGAAGGAACTGCTCAGAATCAAGACATACTTCTTTTTTCTGCAAGTCGAGAGTTCTAAACTCACGATCTTTAGGATTTCCGTAGTTCATTTTTGAATCTATACATTATTCTCGGAAATCCGAACGATCTAGAATTTCTTATACAGTTATCGCTGATAAGTTATTGTTATTCTCTCATTGGTCATGTTTGATATTTCCGTCCATTCAAGCTCATTTTTACTTTCAACCTTCTGAATCCCTAAGTTTTACACTATTGTCATGTTCTTCTCATCTTCTGTTCAGACATTCTATGAGCGAAATACCAAGTAAAGCTTGAAGGTGCAGTGCAAACAGTTGAGATTCATTGTTTTAGAAGTTTACGGCAGAACTAAATATTCTGATCTAGTCATTACGGCGAATAAAAAGTAGTACTTGAAAACAGCCA</canonical>
            <polymorphic>ACAGAGAACGAATAAAAAAATTGAGGAAGACACGCACGGATTCCCGTTGGTTCGAAATCAACGAGGAAGTGGTGAAACTTCGATGCGGACCTCAGTTGAAGTAAGGATTCTAATGGGTGGAACAGTAGGCTTAGGTGTTAGGTATTGGTGATGGGTATATTTGTTGTAACGCTGTATTGGTAGTTGGTGTCGGTGCTTTCTTTTTTTGGGACAGTGAATCTGGAATCTTTTTTTTTTCTTTCTCGGCGTCAGCATATTTTTAGTTTGCTTTTTTCCTTCTTCATCATCTTCTTCGCATGGATCTGTATTCTAGAGATGCCTAGATTCCGTATTCTGGATTCCGGGAAAATATGAGAATCTGCAATACTTTTCTGCACTAGACTTTTCAGCGAATCTTTCGATCCATCTCCTAGGATTTTCGAATTTTCTCTTTTTAGATTTCGTATACTTCTAGGCAATCAATAAATGTTTTGATTGATGAAAACATTCTAAAGTTCAARATGCAACTAATTCGCATGAGCCATATGATTAACTAATATTGACTAGTCTCTGGAAGCTGAAAACGACTAGAATTCAATGAAGGAACTGCTCAGAATCAAGACATACTTCTTTTTTCTGCAAGTCGAGAGTTCTAAACTCACGATCTTTAGGATTTCCGTAGTTCATTTTTGAATCTATACATTATTCTCGGAAATCCGAACGATCTAGAATTTCTTATACAGTTATCGCTGATAAGTTATTGTTATTCTCTCATTGGTCATGTTTGATATTTCCGTCCATTCAAGCTCATTTTTACTTTCAACCTTCTGAATCCCTAAGTTTTACACTATTGTCATGTTCTTCTCATCTTCTGTTCAGACATTCTATGAGCGAAATACCAAGTAAAGCTTGAAGGTGCAGTGCAAACAGTTGAGATTCATTGTTTTAGAAGTTTACGGCAGAACTAAATATTCTGATCTAGTCATTACGGCGAATAAAAAGTAGTACTTGAAAACAGCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>295 220 163 90 66 53 47 27 24 15</canonical_bands>
                <polymorphic_bands>295 220 216 90 66 47 27 24 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTGCAATACTTTTCTGCACTA</pcr_primer_p1>
		<pcr_primer_p2>GTATGTCTTGATTCTGAGCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTGCAATACTTTTCTGCACTAGACTTTTCAGCGAATCTTTCGATCCATCTCCTAGGATTTTCGAATTTTCTCTTTTTAGATTTCGTATACTTCTAGGCAATCAATAAATGTTTTGATTGATGAAAACATTCTAAAGTTCAAGATGCAACTAATTCGCATGAGCCATATGATTAACTAATATTGACTAGTCTCTGGAAGCTGAAAACGACTAGAATTCAATGAAGGAACTGCTCAGAATCAAGACATAC</canonical_amplicon>
		<polymorphic_amplicon>ATCTGCAATACTTTTCTGCACTAGACTTTTCAGCGAATCTTTCGATCCATCTCCTAGGATTTTCGAATTTTCTCTTTTTAGATTTCGTATACTTCTAGGCAATCAATAAATGTTTTGATTGATGAAAACATTCTAAAGTTCAARATGCAACTAATTCGCATGAGCCATATGATTAACTAATATTGACTAGTCTCTGGAAGCTGAAAACGACTAGAATTCAATGAAGGAACTGCTCAGAATCAAGACATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19550</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>176290</contig_pos>
        <strand>+</strand>
        <context>TCCGTAGTTC[A/T]TTTTTGAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTGCAAGTCGAGAGTTCTAAACTCACGATCTTTAGGATTTCCGTAGTTC</left_flank>
        <right_flank>TTTTTGAATCTATACATTATTCTCGGAAATCCGAACGATCTAGAATTTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAACGCTGTATTGGTAGTTGGTGTCGGTGCTTTCTTTTTTTGGGACAGTGAATCTGGAATCTTTTTTTTTTCTTTCTCGGCGTCAGCATATTTTTAGTTTGCTTTTTTCCTTCTTCATCATCTTCTTCGCATGGATCTGTATTCTAGAGATGCCTAGATTCCGTATTCTGGATTCCGGGAAAATATGAGAATCTGCAATACTTTTCTGCACTAGACTTTTCAGCGAATCTTTCGATCCATCTCCTAGGATTTTCGAATTTTCTCTTTTTAGATTTCGTATACTTCTAGGCAATCAATAAATGTTTTGATTGATGAAAACATTCTAAAGTTCAAGATGCAACTAATTCGCATGAGCCATATGATTAACTAATATTGACTAGTCTCTGGAAGCTGAAAACGACTAGAATTCAATGAAGGAACTGCTCAGAATCAAGACATACTTCTTTTTTCTGCAAGTCGAGAGTTCTAAACTCACGATCTTTAGGATTTCCGTAGTTCATTTTTGAATCTATACATTATTCTCGGAAATCCGAACGATCTAGAATTTCTTATACAGTTATCGCTGATAAGTTATTGTTATTCTCTCATTGGTCATGTTTGATATTTCCGTCCATTCAAGCTCATTTTTACTTTCAACCTTCTGAATCCCTAAGTTTTACACTATTGTCATGTTCTTCTCATCTTCTGTTCAGACATTCTATGAGCGAAATACCAAGTAAAGCTTGAAGGTGCAGTGCAAACAGTTGAGATTCATTGTTTTAGAAGTTTACGGCAGAACTAAATATTCTGATCTAGTCATTACGGCGAATAAAAAGTAGTACTTGAAAACAGCCACGAAAACGGTTTCACCACCTAATCCTCCTAATTTTTTCAGAACTAAGCGACGCCAACTGATGTCACGACACCAGACCCGTCATGTAGCCCGTCATCCATGCGAATTCCATCAATTTCTTCAGTCATACCATGCAATAATATCTCCAATATTTCTCGACGAAGTCA</canonical>
            <polymorphic>GTAACGCTGTATTGGTAGTTGGTGTCGGTGCTTTCTTTTTTTGGGACAGTGAATCTGGAATCTTTTTTTTTTCTTTCTCGGCGTCAGCATATTTTTAGTTTGCTTTTTTCCTTCTTCATCATCTTCTTCGCATGGATCTGTATTCTAGAGATGCCTAGATTCCGTATTCTGGATTCCGGGAAAATATGAGAATCTGCAATACTTTTCTGCACTAGACTTTTCAGCGAATCTTTCGATCCATCTCCTAGGATTTTCGAATTTTCTCTTTTTAGATTTCGTATACTTCTAGGCAATCAATAAATGTTTTGATTGATGAAAACATTCTAAAGTTCAAGATGCAACTAATTCGCATGAGCCATATGATTAACTAATATTGACTAGTCTCTGGAAGCTGAAAACGACTAGAATTCAATGAAGGAACTGCTCAGAATCAAGACATACTTCTTTTTTCTGCAAGTCGAGAGTTCTAAACTCACGATCTTTAGGATTTCCGTAGTTCWTTTTTGAATCTATACATTATTCTCGGAAATCCGAACGATCTAGAATTTCTTATACAGTTATCGCTGATAAGTTATTGTTATTCTCTCATTGGTCATGTTTGATATTTCCGTCCATTCAAGCTCATTTTTACTTTCAACCTTCTGAATCCCTAAGTTTTACACTATTGTCATGTTCTTCTCATCTTCTGTTCAGACATTCTATGAGCGAAATACCAAGTAAAGCTTGAAGGTGCAGTGCAAACAGTTGAGATTCATTGTTTTAGAAGTTTACGGCAGAACTAAATATTCTGATCTAGTCATTACGGCGAATAAAAAGTAGTACTTGAAAACAGCCACGAAAACGGTTTCACCACCTAATCCTCCTAATTTTTTCAGAACTAAGCGACGCCAACTGATGTCACGACACCAGACCCGTCATGTAGCCCGTCATCCATGCGAATTCCATCAATTTCTTCAGTCATACCATGCAATAATATCTCCAATATTTCTCGACGAAGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTAGAATTCAATGAAGGAACTG</pcr_primer_p1>
		<pcr_primer_p2>GATTCAGAAGGTTGAAAGTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACTAGAATTCAATGAAGGAACTGCTCAGAATCAAGACATACTTCTTTTTTCTGCAAGTCGAGAGTTCTAAACTCACGATCTTTAGGATTTCCGTAGTTCATTTTTGAATCTATACATTATTCTCGGAAATCCGAACGATCTAGAATTTCTTATACAGTTATCGCTGATAAGTTATTGTTATTCTCTCATTGGTCATGTTTGATATTTCCGTCCATTCAAGCTCATTTTTACTTTCAACCTTCTGAATC</canonical_amplicon>
		<polymorphic_amplicon>ACTAGAATTCAATGAAGGAACTGCTCAGAATCAAGACATACTTCTTTTTTCTGCAAGTCGAGAGTTCTAAACTCACGATCTTTAGGATTTCCGTAGTTCWTTTTTGAATCTATACATTATTCTCGGAAATCCGAACGATCTAGAATTTCTTATACAGTTATCGCTGATAAGTTATTGTTATTCTCTCATTGGTCATGTTTGATATTTCCGTCCATTCAAGCTCATTTTTACTTTCAACCTTCTGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19551</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>176323</contig_pos>
        <strand>+</strand>
        <context>TCGGAAATCC[A/G]AACGATCTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGGATTTCCGTAGTTCATTTTTGAATCTATACATTATTCTCGGAAATCC</left_flank>
        <right_flank>AACGATCTAGAATTTCTTATACAGTTATCGCTGATAAGTTATTGTTATTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTTTTTTGGGACAGTGAATCTGGAATCTTTTTTTTTTCTTTCTCGGCGTCAGCATATTTTTAGTTTGCTTTTTTCCTTCTTCATCATCTTCTTCGCATGGATCTGTATTCTAGAGATGCCTAGATTCCGTATTCTGGATTCCGGGAAAATATGAGAATCTGCAATACTTTTCTGCACTAGACTTTTCAGCGAATCTTTCGATCCATCTCCTAGGATTTTCGAATTTTCTCTTTTTAGATTTCGTATACTTCTAGGCAATCAATAAATGTTTTGATTGATGAAAACATTCTAAAGTTCAAGATGCAACTAATTCGCATGAGCCATATGATTAACTAATATTGACTAGTCTCTGGAAGCTGAAAACGACTAGAATTCAATGAAGGAACTGCTCAGAATCAAGACATACTTCTTTTTTCTGCAAGTCGAGAGTTCTAAACTCACGATCTTTAGGATTTCCGTAGTTCATTTTTGAATCTATACATTATTCTCGGAAATCCGAACGATCTAGAATTTCTTATACAGTTATCGCTGATAAGTTATTGTTATTCTCTCATTGGTCATGTTTGATATTTCCGTCCATTCAAGCTCATTTTTACTTTCAACCTTCTGAATCCCTAAGTTTTACACTATTGTCATGTTCTTCTCATCTTCTGTTCAGACATTCTATGAGCGAAATACCAAGTAAAGCTTGAAGGTGCAGTGCAAACAGTTGAGATTCATTGTTTTAGAAGTTTACGGCAGAACTAAATATTCTGATCTAGTCATTACGGCGAATAAAAAGTAGTACTTGAAAACAGCCACGAAAACGGTTTCACCACCTAATCCTCCTAATTTTTTCAGAACTAAGCGACGCCAACTGATGTCACGACACCAGACCCGTCATGTAGCCCGTCATCCATGCGAATTCCATCAATTTCTTCAGTCATACCATGCAATAATATCTCCAATATTTCTCGACGAAGTCAAACGTCCAGGCCCACCACCAATATTTCCTTGAT</canonical>
            <polymorphic>TCTTTTTTTGGGACAGTGAATCTGGAATCTTTTTTTTTTCTTTCTCGGCGTCAGCATATTTTTAGTTTGCTTTTTTCCTTCTTCATCATCTTCTTCGCATGGATCTGTATTCTAGAGATGCCTAGATTCCGTATTCTGGATTCCGGGAAAATATGAGAATCTGCAATACTTTTCTGCACTAGACTTTTCAGCGAATCTTTCGATCCATCTCCTAGGATTTTCGAATTTTCTCTTTTTAGATTTCGTATACTTCTAGGCAATCAATAAATGTTTTGATTGATGAAAACATTCTAAAGTTCAAGATGCAACTAATTCGCATGAGCCATATGATTAACTAATATTGACTAGTCTCTGGAAGCTGAAAACGACTAGAATTCAATGAAGGAACTGCTCAGAATCAAGACATACTTCTTTTTTCTGCAAGTCGAGAGTTCTAAACTCACGATCTTTAGGATTTCCGTAGTTCATTTTTGAATCTATACATTATTCTCGGAAATCCRAACGATCTAGAATTTCTTATACAGTTATCGCTGATAAGTTATTGTTATTCTCTCATTGGTCATGTTTGATATTTCCGTCCATTCAAGCTCATTTTTACTTTCAACCTTCTGAATCCCTAAGTTTTACACTATTGTCATGTTCTTCTCATCTTCTGTTCAGACATTCTATGAGCGAAATACCAAGTAAAGCTTGAAGGTGCAGTGCAAACAGTTGAGATTCATTGTTTTAGAAGTTTACGGCAGAACTAAATATTCTGATCTAGTCATTACGGCGAATAAAAAGTAGTACTTGAAAACAGCCACGAAAACGGTTTCACCACCTAATCCTCCTAATTTTTTCAGAACTAAGCGACGCCAACTGATGTCACGACACCAGACCCGTCATGTAGCCCGTCATCCATGCGAATTCCATCAATTTCTTCAGTCATACCATGCAATAATATCTCCAATATTTCTCGACGAAGTCAAACGTCCAGGCCCACCACCAATATTTCCTTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>394 159 111 98 97 85 49 7</canonical_bands>
                <polymorphic_bands>394 159 118 98 97 85 49</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTAGAATTCAATGAAGGAACTG</pcr_primer_p1>
		<pcr_primer_p2>GATTCAGAAGGTTGAAAGTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACTAGAATTCAATGAAGGAACTGCTCAGAATCAAGACATACTTCTTTTTTCTGCAAGTCGAGAGTTCTAAACTCACGATCTTTAGGATTTCCGTAGTTCATTTTTGAATCTATACATTATTCTCGGAAATCCGAACGATCTAGAATTTCTTATACAGTTATCGCTGATAAGTTATTGTTATTCTCTCATTGGTCATGTTTGATATTTCCGTCCATTCAAGCTCATTTTTACTTTCAACCTTCTGAATC</canonical_amplicon>
		<polymorphic_amplicon>ACTAGAATTCAATGAAGGAACTGCTCAGAATCAAGACATACTTCTTTTTTCTGCAAGTCGAGAGTTCTAAACTCACGATCTTTAGGATTTCCGTAGTTCATTTTTGAATCTATACATTATTCTCGGAAATCCRAACGATCTAGAATTTCTTATACAGTTATCGCTGATAAGTTATTGTTATTCTCTCATTGGTCATGTTTGATATTTCCGTCCATTCAAGCTCATTTTTACTTTCAACCTTCTGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19552</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>176410</contig_pos>
        <strand>+</strand>
        <context>GTCCATTCAA[A/G]CTCATTTTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTATTGTTATTCTCTCATTGGTCATGTTTGATATTTCCGTCCATTCAA</left_flank>
        <right_flank>CTCATTTTTACTTTCAACCTTCTGAATCCCTAAGTTTTACACTATTGTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTTCTTCGCATGGATCTGTATTCTAGAGATGCCTAGATTCCGTATTCTGGATTCCGGGAAAATATGAGAATCTGCAATACTTTTCTGCACTAGACTTTTCAGCGAATCTTTCGATCCATCTCCTAGGATTTTCGAATTTTCTCTTTTTAGATTTCGTATACTTCTAGGCAATCAATAAATGTTTTGATTGATGAAAACATTCTAAAGTTCAAGATGCAACTAATTCGCATGAGCCATATGATTAACTAATATTGACTAGTCTCTGGAAGCTGAAAACGACTAGAATTCAATGAAGGAACTGCTCAGAATCAAGACATACTTCTTTTTTCTGCAAGTCGAGAGTTCTAAACTCACGATCTTTAGGATTTCCGTAGTTCATTTTTGAATCTATACATTATTCTCGGAAATCCGAACGATCTAGAATTTCTTATACAGTTATCGCTGATAAGTTATTGTTATTCTCTCATTGGTCATGTTTGATATTTCCGTCCATTCAAGCTCATTTTTACTTTCAACCTTCTGAATCCCTAAGTTTTACACTATTGTCATGTTCTTCTCATCTTCTGTTCAGACATTCTATGAGCGAAATACCAAGTAAAGCTTGAAGGTGCAGTGCAAACAGTTGAGATTCATTGTTTTAGAAGTTTACGGCAGAACTAAATATTCTGATCTAGTCATTACGGCGAATAAAAAGTAGTACTTGAAAACAGCCACGAAAACGGTTTCACCACCTAATCCTCCTAATTTTTTCAGAACTAAGCGACGCCAACTGATGTCACGACACCAGACCCGTCATGTAGCCCGTCATCCATGCGAATTCCATCAATTTCTTCAGTCATACCATGCAATAATATCTCCAATATTTCTCGACGAAGTCAAACGTCCAGGCCCACCACCAATATTTCCTTGATACTTAAATCCTGATGATCTTCTTCTTGTTTTTTCTCCGTTTTCCTTTCCATTCTTGAAATATACAATTTTCCGAAAATTTCAAATCC</canonical>
            <polymorphic>ATCTTCTTCGCATGGATCTGTATTCTAGAGATGCCTAGATTCCGTATTCTGGATTCCGGGAAAATATGAGAATCTGCAATACTTTTCTGCACTAGACTTTTCAGCGAATCTTTCGATCCATCTCCTAGGATTTTCGAATTTTCTCTTTTTAGATTTCGTATACTTCTAGGCAATCAATAAATGTTTTGATTGATGAAAACATTCTAAAGTTCAAGATGCAACTAATTCGCATGAGCCATATGATTAACTAATATTGACTAGTCTCTGGAAGCTGAAAACGACTAGAATTCAATGAAGGAACTGCTCAGAATCAAGACATACTTCTTTTTTCTGCAAGTCGAGAGTTCTAAACTCACGATCTTTAGGATTTCCGTAGTTCATTTTTGAATCTATACATTATTCTCGGAAATCCGAACGATCTAGAATTTCTTATACAGTTATCGCTGATAAGTTATTGTTATTCTCTCATTGGTCATGTTTGATATTTCCGTCCATTCAARCTCATTTTTACTTTCAACCTTCTGAATCCCTAAGTTTTACACTATTGTCATGTTCTTCTCATCTTCTGTTCAGACATTCTATGAGCGAAATACCAAGTAAAGCTTGAAGGTGCAGTGCAAACAGTTGAGATTCATTGTTTTAGAAGTTTACGGCAGAACTAAATATTCTGATCTAGTCATTACGGCGAATAAAAAGTAGTACTTGAAAACAGCCACGAAAACGGTTTCACCACCTAATCCTCCTAATTTTTTCAGAACTAAGCGACGCCAACTGATGTCACGACACCAGACCCGTCATGTAGCCCGTCATCCATGCGAATTCCATCAATTTCTTCAGTCATACCATGCAATAATATCTCCAATATTTCTCGACGAAGTCAAACGTCCAGGCCCACCACCAATATTTCCTTGATACTTAAATCCTGATGATCTTCTTCTTGTTTTTTCTCCGTTTTCCTTTCCATTCTTGAAATATACAATTTTCCGAAAATTTCAAATCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>398 271 229 102</canonical_bands>
                <polymorphic_bands>398 331 271</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>235 229 110 110 102 90 88 36</canonical_bands>
                <polymorphic_bands>331 235 110 110 90 88 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGCAAGTCGAGAGTTCTAAA</pcr_primer_p1>
		<pcr_primer_p2>AGAATGTCTGAACAGAAGATGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGCAAGTCGAGAGTTCTAAACTCACGATCTTTAGGATTTCCGTAGTTCATTTTTGAATCTATACATTATTCTCGGAAATCCGAACGATCTAGAATTTCTTATACAGTTATCGCTGATAAGTTATTGTTATTCTCTCATTGGTCATGTTTGATATTTCCGTCCATTCAAGCTCATTTTTACTTTCAACCTTCTGAATCCCTAAGTTTTACACTATTGTCATGTTCTTCTCATCTTCTGTTCAGACATTCT</canonical_amplicon>
		<polymorphic_amplicon>CTGCAAGTCGAGAGTTCTAAACTCACGATCTTTAGGATTTCCGTAGTTCATTTTTGAATCTATACATTATTCTCGGAAATCCGAACGATCTAGAATTTCTTATACAGTTATCGCTGATAAGTTATTGTTATTCTCTCATTGGTCATGTTTGATATTTCCGTCCATTCAARCTCATTTTTACTTTCAACCTTCTGAATCCCTAAGTTTTACACTATTGTCATGTTCTTCTCATCTTCTGTTCAGACATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19553</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>177593</contig_pos>
        <strand>+</strand>
        <context>CGGCTTGGCC[A/T]AAATAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCCAAGGCCTTCGAATTTTAACATCGGAAAACTTTACCGGCGGCTTGGCC</left_flank>
        <right_flank>AAATAAAAAAGGCCCGATTTCTGGTCAGGCCATTTACAACCCTGTGGGTC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATGTTTTAAAAAATTATGTAATCTAACGGAATTTATTTGGGAACGAAATGAAACTCGTTTGAATCTTTATGTCTTTTTGGGAACATTTTTTCCAGGTTTCTCATGCAATTGATAACAGCATTCATCAAAACAAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACACGGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGCCAAGGCCTTCGAATTTTAACATCGGAAAACTTTACCGGCGGCTTGGCCAAAATAAAAAAGGCCCGATTTCTGGTCAGGCCATTTACAACCCTGTGGGTCCGTTGCAGTATCCATAACAGTGACAAGTTTCGATTAGTTAATTCACAATTCTTTTATTCACATTTTCTCACAAAAAATGTTGAAACAAAAGACAATTTTCAAAGAAAAAGGGGCGAATGGTCAGGGTGTTCTTCATCACCGAGTGGTTTCTGTGTGTGTGGTGTGTAGAGAGGAAAATAAACGATGGAAAATATTTATGAAGACAGCAAAATTCTTGGGATCTTTTGAATTTCACAGCTTCAATGTCTCTCGTGCTCTCTCGTCATTTTGTGTGTGTGAGTGCGTGTGTTCGGAAAAGAGGAATAAAGTGGAAAAAAATTAAAAGATAGAAGCAAACAGCTGGGGGGAAACGGAATGGTTATCGATAGAAATGGAGAGCAAATATTAAAGATTTTTTCGATTTTCTAGGGTGTCAGAATAAGTGATAACATACGATTAAACGGGAGAATT</canonical>
            <polymorphic>CAATGTTTTAAAAAATTATGTAATCTAACGGAATTTATTTGGGAACGAAATGAAACTCGTTTGAATCTTTATGTCTTTTTGGGAACATTTTTTCCAGGTTTCTCATGCAATTGATAACAGCATTCATCAAAACAAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACACGGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGCCAAGGCCTTCGAATTTTAACATCGGAAAACTTTACCGGCGGCTTGGCCWAAATAAAAAAGGCCCGATTTCTGGTCAGGCCATTTACAACCCTGTGGGTCCGTTGCAGTATCCATAACAGTGACAAGTTTCGATTAGTTAATTCACAATTCTTTTATTCACATTTTCTCACAAAAAATGTTGAAACAAAAGACAATTTTCAAAGAAAAAGGGGCGAATGGTCAGGGTGTTCTTCATCACCGAGTGGTTTCTGTGTGTGTGGTGTGTAGAGAGGAAAATAAACGATGGAAAATATTTATGAAGACAGCAAAATTCTTGGGATCTTTTGAATTTCACAGCTTCAATGTCTCTCGTGCTCTCTCGTCATTTTGTGTGTGTGAGTGCGTGTGTTCGGAAAAGAGGAATAAAGTGGAAAAAAATTAAAAGATAGAAGCAAACAGCTGGGGGGAAACGGAATGGTTATCGATAGAAATGGAGAGCAAATATTAAAGATTTTTTCGATTTTCTAGGGTGTCAGAATAAGTGATAACATACGATTAAACGGGAGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGGCCA</site>
                <isoschizomers>
                    <enzyme>BalI</enzyme>
                    <enzyme>MlsI</enzyme>
                    <enzyme>MluNI</enzyme>
                    <enzyme>MscI</enzyme>
                    <enzyme>Msp20I</enzyme>
                </isoschizomers>
                <canonical_bands>503 397 100</canonical_bands>
                <polymorphic_bands>603 397</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>505 395 100</canonical_bands>
                <polymorphic_bands>605 395</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>471 139 95 57 53 46 41 33 32 27 6</canonical_bands>
                <polymorphic_bands>471 139 95 73 57 53 46 33 27 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAACCGAAATTTTCTAGG</pcr_primer_p1>
		<pcr_primer_p2>TTGAAAATTGTCTTTTGTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>222</pcr_amplicon_size>
		<canonical_amplicon>GGAAACCGAAATTTTCTAGGCCAAGGCCTTCGAATTTTAACATCGGAAAACTTTACCGGCGGCTTGGCCAAAATAAAAAAGGCCCGATTTCTGGTCAGGCCATTTACAACCCTGTGGGTCCGTTGCAGTATCCATAACAGTGACAAGTTTCGATTAGTTAATTCACAATTCTTTTATTCACATTTTCTCACAAAAAATGTTGAAACAAAAGACAATTTTCAA</canonical_amplicon>
		<polymorphic_amplicon>GGAAACCGAAATTTTCTAGGCCAAGGCCTTCGAATTTTAACATCGGAAAACTTTACCGGCGGCTTGGCCWAAATAAAAAAGGCCCGATTTCTGGTCAGGCCATTTACAACCCTGTGGGTCCGTTGCAGTATCCATAACAGTGACAAGTTTCGATTAGTTAATTCACAATTCTTTTATTCACATTTTCTCACAAAAAATGTTGAAACAAAAGACAATTTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19554</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>185249</contig_pos>
        <strand>+</strand>
        <context>TCAAGTGAGA[A/G]TTTCGAACAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTGGAAGTGAAAAAAGATGGATGATTTCTGTTTACATAATCAAGTGAGA</left_flank>
        <right_flank>TTTCGAACATCATAGTATCCCCGTGATGGATCCCGCTTCAGACCTCCACC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAATCATCGAGAATAATTTATCTGTAAAGTGAACAAAAACATTTCTAAAGCTCTAATAGTAAGACGCAAATAAATGCAATAGAATGGCCCCTACTCTGTCAATTTCAGCTCTATTATCTCGGGTCCTATAAAGTGTATCAAAAATGTGTTTGCTGATAAAATGTTTGTGATATTATGATTGACAATCTATCAGTTGACAACATTTTGATATACTTCACAGGAGCGGAGTTAAATTCGCTCAAACTTAACAGATAGGCGGTCCTTCTATTACAGGTTTTACGGTAGGTGAAAAACAGTACATAAAAAGACATAGAGATAACACTTTGAGGAGAGGAATGTAACACGTCAGCAGTTTTGGAATTAGAGAGGATAAAACAATAATATTAGATGAGCTCATTGGGTTCAGGAAAAACGATTAAAAACGACACTTTTCTTGTCAAACAAGAAAGTGGAAGTGAAAAAAGATGGATGATTTCTGTTTACATAATCAAGTGAGAATTTCGAACATCATAGTATCCCCGTGATGGATCCCGCTTCAGACCTCCACCACTACCTCTGGAAGACGGTGCAGTATTTGATAGATGAATCTGTAATATAAATCAACTTTGTTAGCGAATTTTCTAAATTCCCACTCACCGATGGATCTATGTAAAACGGTCGGAAGTAGTGTGTTCTTTTTCTATCATATAACGTTCGAAACTTGGTACAGTTGAGATAAACCAAAATGAAAATGGCAAGCGCCAGAATGACCAAAATGGAAATTTTGGCAATAGTCATCACAGTACTCCAATAAGTATCTGTACTTGGGAATAGAAGAGGAAGCTTATTGGTGAATCTGACTGGTGATAGCTGGATGACTTCTGCGATTTGCTCGTGTTTCTCGAAACGACTACGGTCGTCCCAGTTATAGTTGTGAGGACTCTGAAAGCAAAAAGATGAAACTTTTAATTACTAAAAATTTTCAACCAAAAAAAGTTACCCTAATTTGAGAAGAGTTG</canonical>
            <polymorphic>TCCAATCATCGAGAATAATTTATCTGTAAAGTGAACAAAAACATTTCTAAAGCTCTAATAGTAAGACGCAAATAAATGCAATAGAATGGCCCCTACTCTGTCAATTTCAGCTCTATTATCTCGGGTCCTATAAAGTGTATCAAAAATGTGTTTGCTGATAAAATGTTTGTGATATTATGATTGACAATCTATCAGTTGACAACATTTTGATATACTTCACAGGAGCGGAGTTAAATTCGCTCAAACTTAACAGATAGGCGGTCCTTCTATTACAGGTTTTACGGTAGGTGAAAAACAGTACATAAAAAGACATAGAGATAACACTTTGAGGAGAGGAATGTAACACGTCAGCAGTTTTGGAATTAGAGAGGATAAAACAATAATATTAGATGAGCTCATTGGGTTCAGGAAAAACGATTAAAAACGACACTTTTCTTGTCAAACAAGAAAGTGGAAGTGAAAAAAGATGGATGATTTCTGTTTACATAATCAAGTGAGARTTTCGAACATCATAGTATCCCCGTGATGGATCCCGCTTCAGACCTCCACCACTACCTCTGGAAGACGGTGCAGTATTTGATAGATGAATCTGTAATATAAATCAACTTTGTTAGCGAATTTTCTAAATTCCCACTCACCGATGGATCTATGTAAAACGGTCGGAAGTAGTGTGTTCTTTTTCTATCATATAACGTTCGAAACTTGGTACAGTTGAGATAAACCAAAATGAAAATGGCAAGCGCCAGAATGACCAAAATGGAAATTTTGGCAATAGTCATCACAGTACTCCAATAAGTATCTGTACTTGGGAATAGAAGAGGAAGCTTATTGGTGAATCTGACTGGTGATAGCTGGATGACTTCTGCGATTTGCTCGTGTTTCTCGAAACGACTACGGTCGTCCCAGTTATAGTTGTGAGGACTCTGAAAGCAAAAAGATGAAACTTTTAATTACTAAAAATTTTCAACCAAAAAAAGTTACCCTAATTTGAGAAGAGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>265 233 197 136 118 42 9</canonical_bands>
                <polymorphic_bands>383 233 197 136 42 9</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>187 138 136 131 127 118 86 26 16 16 10 9</canonical_bands>
                <polymorphic_bands>256 187 136 131 127 86 26 16 16 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAAAAACGACACTTTTCTTGTC</pcr_primer_p1>
		<pcr_primer_p2>TACTTCCGACCGTTTTACATAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTAAAAACGACACTTTTCTTGTCAAACAAGAAAGTGGAAGTGAAAAAAGATGGATGATTTCTGTTTACATAATCAAGTGAGAATTTCGAACATCATAGTATCCCCGTGATGGATCCCGCTTCAGACCTCCACCACTACCTCTGGAAGACGGTGCAGTATTTGATAGATGAATCTGTAATATAAATCAACTTTGTTAGCGAATTTTCTAAATTCCCACTCACCGATGGATCTATGTAAAACGGTCGGAAGTA</canonical_amplicon>
		<polymorphic_amplicon>TTAAAAACGACACTTTTCTTGTCAAACAAGAAAGTGGAAGTGAAAAAAGATGGATGATTTCTGTTTACATAATCAAGTGAGARTTTCGAACATCATAGTATCCCCGTGATGGATCCCGCTTCAGACCTCCACCACTACCTCTGGAAGACGGTGCAGTATTTGATAGATGAATCTGTAATATAAATCAACTTTGTTAGCGAATTTTCTAAATTCCCACTCACCGATGGATCTATGTAAAACGGTCGGAAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19555</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>189504</contig_pos>
        <strand>+</strand>
        <context>CCACCATTTT[A/T]AATTTTTTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATTGTCCAAGTATAGATGACCCGATAATTCCTCTCTCCCACCATTTT</left_flank>
        <right_flank>AATTTTTTACGGACTGCAAAAAATAAGGAAACCCACTTACCGTTCCAGAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCACTCTCAAACTAAAATAGTCTTACAGCAAAAATCCAGTTATCCGGTTCTGTTGATATCGTGGAGTACTCAAAAGCGTATGCAAATGCGGATGGTTGAGGCTCGATGGATACTCGAATCATATGAGCATCAACGTATTCTGATTTCGTTTTTGGTATAATTGTGGATATTCGAGCTGAAAATATATCTGGATTGTAAATATCAGTTGCAATATTGCAGAAATTACCTGTCTGGAAATCTGCATCAAACTTTGTACAATTCGATGGATCTCGGGAAACTGGACAGTTACATGTGGACGCAGAAGGCTGGAAATAGTGCTAGATGTCAATGTTGTCTGAACGATGAAGAGTTGTGTAGAGGCCACACCCAGTTATTATTTCTCCATTCAACCAAAAAATTCTTTGCCAAAATTTTCCGAATAAACAGATCGAGGAAAAAGGTAAACGAAAAATTGTCCAAGTATAGATGACCCGATAATTCCTCTCTCCCACCATTTTAAATTTTTTACGGACTGCAAAAAATAAGGAAACCCACTTACCGTTCCAGAATGCATACACACAGCATAACATTCCAGAGAACACTTGGTTTTCAAGTGTGGTTGTGCAATTGATGGCATAATGAGAAAAACGAAAACAATGAACATAATCGGATTTTTGAAAATGATATCATTGGATTTAGTTATCATCTCTGAAAGTATAAAAATCGTGTCTAAAAAGGGAGACTTGTTTAAAATTAACAACAAAACAAAAAAGGAAATCTTCGTTCCACAGAAGGATAAAGCGAACGTTTCCATAGAAGTAGCCAAGTCAACAGGCATGACTACCACTTTTAGAAGAGAGACCGGTCAAACGTTGAAAGAAGAAGAATAAAAAGGGAATATTCAAAAGAAAAGAAACGAAAAAATGCAAAATGAAAAGTAAATGTTACGGTTGTGTTGGCATGAAAGGGTGGTCGGATGGCTGAGGATGGTGAGATATATGGATCAAGAAACCGGAAGA</canonical>
            <polymorphic>AACCACTCTCAAACTAAAATAGTCTTACAGCAAAAATCCAGTTATCCGGTTCTGTTGATATCGTGGAGTACTCAAAAGCGTATGCAAATGCGGATGGTTGAGGCTCGATGGATACTCGAATCATATGAGCATCAACGTATTCTGATTTCGTTTTTGGTATAATTGTGGATATTCGAGCTGAAAATATATCTGGATTGTAAATATCAGTTGCAATATTGCAGAAATTACCTGTCTGGAAATCTGCATCAAACTTTGTACAATTCGATGGATCTCGGGAAACTGGACAGTTACATGTGGACGCAGAAGGCTGGAAATAGTGCTAGATGTCAATGTTGTCTGAACGATGAAGAGTTGTGTAGAGGCCACACCCAGTTATTATTTCTCCATTCAACCAAAAAATTCTTTGCCAAAATTTTCCGAATAAACAGATCGAGGAAAAAGGTAAACGAAAAATTGTCCAAGTATAGATGACCCGATAATTCCTCTCTCCCACCATTTTWAATTTTTTACGGACTGCAAAAAATAAGGAAACCCACTTACCGTTCCAGAATGCATACACACAGCATAACATTCCAGAGAACACTTGGTTTTCAAGTGTGGTTGTGCAATTGATGGCATAATGAGAAAAACGAAAACAATGAACATAATCGGATTTTTGAAAATGATATCATTGGATTTAGTTATCATCTCTGAAAGTATAAAAATCGTGTCTAAAAAGGGAGACTTGTTTAAAATTAACAACAAAACAAAAAAGGAAATCTTCGTTCCACAGAAGGATAAAGCGAACGTTTCCATAGAAGTAGCCAAGTCAACAGGCATGACTACCACTTTTAGAAGAGAGACCGGTCAAACGTTGAAAGAAGAAGAATAAAAAGGGAATATTCAAAAGAAAAGAAACGAAAAAATGCAAAATGAAAAGTAAATGTTACGGTTGTGTTGGCATGAAAGGGTGGTCGGATGGCTGAGGATGGTGAGATATATGGATCAAGAAACCGGAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>500 397 90 13</canonical_bands>
                <polymorphic_bands>590 397 13</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 270 231</canonical_bands>
                <polymorphic_bands>730 270</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>498 265 231 6</canonical_bands>
                <polymorphic_bands>729 265 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAAACGAAAAATTGTCCAAGTA</pcr_primer_p1>
		<pcr_primer_p2>CAGAGATGATAACTAAATCCAATG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTAAACGAAAAATTGTCCAAGTATAGATGACCCGATAATTCCTCTCTCCCACCATTTTAAATTTTTTACGGACTGCAAAAAATAAGGAAACCCACTTACCGTTCCAGAATGCATACACACAGCATAACATTCCAGAGAACACTTGGTTTTCAAGTGTGGTTGTGCAATTGATGGCATAATGAGAAAAACGAAAACAATGAACATAATCGGATTTTTGAAAATGATATCATTGGATTTAGTTATCATCTCTG</canonical_amplicon>
		<polymorphic_amplicon>GTAAACGAAAAATTGTCCAAGTATAGATGACCCGATAATTCCTCTCTCCCACCATTTTWAATTTTTTACGGACTGCAAAAAATAAGGAAACCCACTTACCGTTCCAGAATGCATACACACAGCATAACATTCCAGAGAACACTTGGTTTTCAAGTGTGGTTGTGCAATTGATGGCATAATGAGAAAAACGAAAACAATGAACATAATCGGATTTTTGAAAATGATATCATTGGATTTAGTTATCATCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19556</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>189414</contig_pos>
        <strand>+</strand>
        <context>TTCTTTGCCA[A/T]AATTTTCCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGGCCACACCCAGTTATTATTTCTCCATTCAACCAAAAAATTCTTTGCCA</left_flank>
        <right_flank>AATTTTCCGAATAAACAGATCGAGGAAAAAGGTAAACGAAAAATTGTCCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTACGATAGGTTTTATAATATGAATTCCTATGAAAAACAATGGTTTTGAAATTGATGAGAAGGTTTTCTGTTAACATTTGTTTTCTTGAACCACTCTCAAACTAAAATAGTCTTACAGCAAAAATCCAGTTATCCGGTTCTGTTGATATCGTGGAGTACTCAAAAGCGTATGCAAATGCGGATGGTTGAGGCTCGATGGATACTCGAATCATATGAGCATCAACGTATTCTGATTTCGTTTTTGGTATAATTGTGGATATTCGAGCTGAAAATATATCTGGATTGTAAATATCAGTTGCAATATTGCAGAAATTACCTGTCTGGAAATCTGCATCAAACTTTGTACAATTCGATGGATCTCGGGAAACTGGACAGTTACATGTGGACGCAGAAGGCTGGAAATAGTGCTAGATGTCAATGTTGTCTGAACGATGAAGAGTTGTGTAGAGGCCACACCCAGTTATTATTTCTCCATTCAACCAAAAAATTCTTTGCCAAAATTTTCCGAATAAACAGATCGAGGAAAAAGGTAAACGAAAAATTGTCCAAGTATAGATGACCCGATAATTCCTCTCTCCCACCATTTTAAATTTTTTACGGACTGCAAAAAATAAGGAAACCCACTTACCGTTCCAGAATGCATACACACAGCATAACATTCCAGAGAACACTTGGTTTTCAAGTGTGGTTGTGCAATTGATGGCATAATGAGAAAAACGAAAACAATGAACATAATCGGATTTTTGAAAATGATATCATTGGATTTAGTTATCATCTCTGAAAGTATAAAAATCGTGTCTAAAAAGGGAGACTTGTTTAAAATTAACAACAAAACAAAAAAGGAAATCTTCGTTCCACAGAAGGATAAAGCGAACGTTTCCATAGAAGTAGCCAAGTCAACAGGCATGACTACCACTTTTAGAAGAGAGACCGGTCAAACGTTGAAAGAAGAAGAATAAAAAGGGAATATTCAAAAGAAAAGAAACGAAAAAATGCAA</canonical>
            <polymorphic>GTTTACGATAGGTTTTATAATATGAATTCCTATGAAAAACAATGGTTTTGAAATTGATGAGAAGGTTTTCTGTTAACATTTGTTTTCTTGAACCACTCTCAAACTAAAATAGTCTTACAGCAAAAATCCAGTTATCCGGTTCTGTTGATATCGTGGAGTACTCAAAAGCGTATGCAAATGCGGATGGTTGAGGCTCGATGGATACTCGAATCATATGAGCATCAACGTATTCTGATTTCGTTTTTGGTATAATTGTGGATATTCGAGCTGAAAATATATCTGGATTGTAAATATCAGTTGCAATATTGCAGAAATTACCTGTCTGGAAATCTGCATCAAACTTTGTACAATTCGATGGATCTCGGGAAACTGGACAGTTACATGTGGACGCAGAAGGCTGGAAATAGTGCTAGATGTCAATGTTGTCTGAACGATGAAGAGTTGTGTAGAGGCCACACCCAGTTATTATTTCTCCATTCAACCAAAAAATTCTTTGCCAWAATTTTCCGAATAAACAGATCGAGGAAAAAGGTAAACGAAAAATTGTCCAAGTATAGATGACCCGATAATTCCTCTCTCCCACCATTTTAAATTTTTTACGGACTGCAAAAAATAAGGAAACCCACTTACCGTTCCAGAATGCATACACACAGCATAACATTCCAGAGAACACTTGGTTTTCAAGTGTGGTTGTGCAATTGATGGCATAATGAGAAAAACGAAAACAATGAACATAATCGGATTTTTGAAAATGATATCATTGGATTTAGTTATCATCTCTGAAAGTATAAAAATCGTGTCTAAAAAGGGAGACTTGTTTAAAATTAACAACAAAACAAAAAAGGAAATCTTCGTTCCACAGAAGGATAAAGCGAACGTTTCCATAGAAGTAGCCAAGTCAACAGGCATGACTACCACTTTTAGAAGAGAGACCGGTCAAACGTTGAAAGAAGAAGAATAAAAAGGGAATATTCAAAAGAAAAGAAACGAAAAAATGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>463 410 90 24 13</canonical_bands>
                <polymorphic_bands>463 410 103 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACGATGAAGAGTTGTGTAGAG</pcr_primer_p1>
		<pcr_primer_p2>AGTGTTCTCTGGAATGTTATGC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAACGATGAAGAGTTGTGTAGAGGCCACACCCAGTTATTATTTCTCCATTCAACCAAAAAATTCTTTGCCAAAATTTTCCGAATAAACAGATCGAGGAAAAAGGTAAACGAAAAATTGTCCAAGTATAGATGACCCGATAATTCCTCTCTCCCACCATTTTAAATTTTTTACGGACTGCAAAAAATAAGGAAACCCACTTACCGTTCCAGAATGCATACACACAGCATAACATTCCAGAGAACACT</canonical_amplicon>
		<polymorphic_amplicon>GAACGATGAAGAGTTGTGTAGAGGCCACACCCAGTTATTATTTCTCCATTCAACCAAAAAATTCTTTGCCAWAATTTTCCGAATAAACAGATCGAGGAAAAAGGTAAACGAAAAATTGTCCAAGTATAGATGACCCGATAATTCCTCTCTCCCACCATTTTAAATTTTTTACGGACTGCAAAAAATAAGGAAACCCACTTACCGTTCCAGAATGCATACACACAGCATAACATTCCAGAGAACACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19557</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>240655</contig_pos>
        <strand>+</strand>
        <context>ACTCCGAAAT[C/T]CTTTCATATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTCAGAAAATCATAAATAAAAATTTTCATTTTTAGATCACTCCGAAAT</left_flank>
        <right_flank>CTTTCATATCTCCTGCAAGCTATTTTTGTTTCCAAAATGTCAGCTTCTCC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAGAGAAGAATGAAGTTTGACCGATGGTAACCAATTACCCAATTATTTGTAATACCCAATTTTTGATATTGACAGGGTGGCGCTGATAAAACCGGGTATATCTTCAGACATAAGTACCTTGGAATCACGAAAATTGGTTGAAATTTGATTTTAGGTTCGATTCAAAGCTACTGAAATTTTTAAAACGATTCCTCCAGTATAGGTATTGTTATGATTGTCCAAGAATGAAATGTTTCTTGCACGCCGATTTTCATAAGATAAAGCAACTTTGACTAGCGATAACTCATCTCAAAGTTGATCAAATAATTTGAAACTTGGTCAGTTTAATGATGGATTATTTGAATTTTTGTAATTTGAATTTGAGCTCAGTACAATGTTTCACTCCTTTTGTGCTAGCACAAACTTTAGTCCAGGTAATTATGAGCCATCCTGCAGTTACCTAAAAAGCTTTCAGAAAATCATAAATAAAAATTTTCATTTTTAGATCACTCCGAAATCCTTTCATATCTCCTGCAAGCTATTTTTGTTTCCAAAATGTCAGCTTCTCCTTGTTTTTAGACAAAATGAACACTCGTTGGTTCCCTAAATGGTCATCTGCCAGCATCTCGAATTGCAGTTGTTTGTTTATCTCAAAATAAAATTGAACAACGCCTTTCATATCAAGTTTCCAATTTGAAATCATTTTCCAGTTGTACATCAGTTTCCTCATCTTTTCAAACTCTGCTTAGTACGGTAACCCAATATCTTATGGTCACTTTTTTCCGCCAAAAATTTTTTCCTAGCCCCCACTCTTTTTCCCATAATTCAGAGAATGTCACGTTGAACCGGATGGCCACTGGCTGCCGGCTGAATCCAGAGGGAACATCTTCAAGATGTTCGAAGGAACCTCAAACAAGAGAAAAAGAAAAAGAGAGCTGCCGTCGGAGCACCCCGTCATGACAAATGTGTCGATGATGAGTGTGTGTCGGTGTGCATTTTTCTTTTTGACTTTTTCTTGG</canonical>
            <polymorphic>TAAAGAGAAGAATGAAGTTTGACCGATGGTAACCAATTACCCAATTATTTGTAATACCCAATTTTTGATATTGACAGGGTGGCGCTGATAAAACCGGGTATATCTTCAGACATAAGTACCTTGGAATCACGAAAATTGGTTGAAATTTGATTTTAGGTTCGATTCAAAGCTACTGAAATTTTTAAAACGATTCCTCCAGTATAGGTATTGTTATGATTGTCCAAGAATGAAATGTTTCTTGCACGCCGATTTTCATAAGATAAAGCAACTTTGACTAGCGATAACTCATCTCAAAGTTGATCAAATAATTTGAAACTTGGTCAGTTTAATGATGGATTATTTGAATTTTTGTAATTTGAATTTGAGCTCAGTACAATGTTTCACTCCTTTTGTGCTAGCACAAACTTTAGTCCAGGTAATTATGAGCCATCCTGCAGTTACCTAAAAAGCTTTCAGAAAATCATAAATAAAAATTTTCATTTTTAGATCACTCCGAAATYCTTTCATATCTCCTGCAAGCTATTTTTGTTTCCAAAATGTCAGCTTCTCCTTGTTTTTAGACAAAATGAACACTCGTTGGTTCCCTAAATGGTCATCTGCCAGCATCTCGAATTGCAGTTGTTTGTTTATCTCAAAATAAAATTGAACAACGCCTTTCATATCAAGTTTCCAATTTGAAATCATTTTCCAGTTGTACATCAGTTTCCTCATCTTTTCAAACTCTGCTTAGTACGGTAACCCAATATCTTATGGTCACTTTTTTCCGCCAAAAATTTTTTCCTAGCCCCCACTCTTTTTCCCATAATTCAGAGAATGTCACGTTGAACCGGATGGCCACTGGCTGCCGGCTGAATCCAGAGGGAACATCTTCAAGATGTTCGAAGGAACCTCAAACAAGAGAAAAAGAAAAAGAGAGCTGCCGTCGGAGCACCCCGTCATGACAAATGTGTCGATGATGAGTGTGTGTCGGTGTGCATTTTTCTTTTTGACTTTTTCTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTAAAAAGCTTTCAGAAAATC</pcr_primer_p1>
		<pcr_primer_p2>TTCAAATTGGAAACTTGATATG</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>ACCTAAAAAGCTTTCAGAAAATCATAAATAAAAATTTTCATTTTTAGATCACTCCGAAATCCTTTCATATCTCCTGCAAGCTATTTTTGTTTCCAAAATGTCAGCTTCTCCTTGTTTTTAGACAAAATGAACACTCGTTGGTTCCCTAAATGGTCATCTGCCAGCATCTCGAATTGCAGTTGTTTGTTTATCTCAAAATAAAATTGAACAACGCCTTTCATATCAAGTTTCCAATTTGAA</canonical_amplicon>
		<polymorphic_amplicon>ACCTAAAAAGCTTTCAGAAAATCATAAATAAAAATTTTCATTTTTAGATCACTCCGAAATYCTTTCATATCTCCTGCAAGCTATTTTTGTTTCCAAAATGTCAGCTTCTCCTTGTTTTTAGACAAAATGAACACTCGTTGGTTCCCTAAATGGTCATCTGCCAGCATCTCGAATTGCAGTTGTTTGTTTATCTCAAAATAAAATTGAACAACGCCTTTCATATCAAGTTTCCAATTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19558</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>240694</contig_pos>
        <strand>+</strand>
        <context>TTTCCAAAAT[G/T]TCAGCTTCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CACTCCGAAATCCTTTCATATCTCCTGCAAGCTATTTTTGTTTCCAAAAT</left_flank>
        <right_flank>TCAGCTTCTCCTTGTTTTTAGACAAAATGAACACTCGTTGGTTCCCTAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCAATTATTTGTAATACCCAATTTTTGATATTGACAGGGTGGCGCTGATAAAACCGGGTATATCTTCAGACATAAGTACCTTGGAATCACGAAAATTGGTTGAAATTTGATTTTAGGTTCGATTCAAAGCTACTGAAATTTTTAAAACGATTCCTCCAGTATAGGTATTGTTATGATTGTCCAAGAATGAAATGTTTCTTGCACGCCGATTTTCATAAGATAAAGCAACTTTGACTAGCGATAACTCATCTCAAAGTTGATCAAATAATTTGAAACTTGGTCAGTTTAATGATGGATTATTTGAATTTTTGTAATTTGAATTTGAGCTCAGTACAATGTTTCACTCCTTTTGTGCTAGCACAAACTTTAGTCCAGGTAATTATGAGCCATCCTGCAGTTACCTAAAAAGCTTTCAGAAAATCATAAATAAAAATTTTCATTTTTAGATCACTCCGAAATCCTTTCATATCTCCTGCAAGCTATTTTTGTTTCCAAAATGTCAGCTTCTCCTTGTTTTTAGACAAAATGAACACTCGTTGGTTCCCTAAATGGTCATCTGCCAGCATCTCGAATTGCAGTTGTTTGTTTATCTCAAAATAAAATTGAACAACGCCTTTCATATCAAGTTTCCAATTTGAAATCATTTTCCAGTTGTACATCAGTTTCCTCATCTTTTCAAACTCTGCTTAGTACGGTAACCCAATATCTTATGGTCACTTTTTTCCGCCAAAAATTTTTTCCTAGCCCCCACTCTTTTTCCCATAATTCAGAGAATGTCACGTTGAACCGGATGGCCACTGGCTGCCGGCTGAATCCAGAGGGAACATCTTCAAGATGTTCGAAGGAACCTCAAACAAGAGAAAAAGAAAAAGAGAGCTGCCGTCGGAGCACCCCGTCATGACAAATGTGTCGATGATGAGTGTGTGTCGGTGTGCATTTTTCTTTTTGACTTTTTCTTGGTTTTGATACATATGGTTTTCTCGAGGGACCACTGGAATA</canonical>
            <polymorphic>CCCAATTATTTGTAATACCCAATTTTTGATATTGACAGGGTGGCGCTGATAAAACCGGGTATATCTTCAGACATAAGTACCTTGGAATCACGAAAATTGGTTGAAATTTGATTTTAGGTTCGATTCAAAGCTACTGAAATTTTTAAAACGATTCCTCCAGTATAGGTATTGTTATGATTGTCCAAGAATGAAATGTTTCTTGCACGCCGATTTTCATAAGATAAAGCAACTTTGACTAGCGATAACTCATCTCAAAGTTGATCAAATAATTTGAAACTTGGTCAGTTTAATGATGGATTATTTGAATTTTTGTAATTTGAATTTGAGCTCAGTACAATGTTTCACTCCTTTTGTGCTAGCACAAACTTTAGTCCAGGTAATTATGAGCCATCCTGCAGTTACCTAAAAAGCTTTCAGAAAATCATAAATAAAAATTTTCATTTTTAGATCACTCCGAAATCCTTTCATATCTCCTGCAAGCTATTTTTGTTTCCAAAATKTCAGCTTCTCCTTGTTTTTAGACAAAATGAACACTCGTTGGTTCCCTAAATGGTCATCTGCCAGCATCTCGAATTGCAGTTGTTTGTTTATCTCAAAATAAAATTGAACAACGCCTTTCATATCAAGTTTCCAATTTGAAATCATTTTCCAGTTGTACATCAGTTTCCTCATCTTTTCAAACTCTGCTTAGTACGGTAACCCAATATCTTATGGTCACTTTTTTCCGCCAAAAATTTTTTCCTAGCCCCCACTCTTTTTCCCATAATTCAGAGAATGTCACGTTGAACCGGATGGCCACTGGCTGCCGGCTGAATCCAGAGGGAACATCTTCAAGATGTTCGAAGGAACCTCAAACAAGAGAAAAAGAAAAAGAGAGCTGCCGTCGGAGCACCCCGTCATGACAAATGTGTCGATGATGAGTGTGTGTCGGTGTGCATTTTTCTTTTTGACTTTTTCTTGGTTTTGATACATATGGTTTTCTCGAGGGACCACTGGAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTTCATTTTTAGATCACTCC</pcr_primer_p1>
		<pcr_primer_p2>GAAAAGATGAGGAAACTGATGTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATTTTCATTTTTAGATCACTCCGAAATCCTTTCATATCTCCTGCAAGCTATTTTTGTTTCCAAAATGTCAGCTTCTCCTTGTTTTTAGACAAAATGAACACTCGTTGGTTCCCTAAATGGTCATCTGCCAGCATCTCGAATTGCAGTTGTTTGTTTATCTCAAAATAAAATTGAACAACGCCTTTCATATCAAGTTTCCAATTTGAAATCATTTTCCAGTTGTACATCAGTTTCCTCATCTTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAATTTTCATTTTTAGATCACTCCGAAATCCTTTCATATCTCCTGCAAGCTATTTTTGTTTCCAAAATKTCAGCTTCTCCTTGTTTTTAGACAAAATGAACACTCGTTGGTTCCCTAAATGGTCATCTGCCAGCATCTCGAATTGCAGTTGTTTGTTTATCTCAAAATAAAATTGAACAACGCCTTTCATATCAAGTTTCCAATTTGAAATCATTTTCCAGTTGTACATCAGTTTCCTCATCTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19559</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>240718</contig_pos>
        <strand>+</strand>
        <context>GTTTTTAGAC[A/C]AAATGAACAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGCAAGCTATTTTTGTTTCCAAAATGTCAGCTTCTCCTTGTTTTTAGAC</left_flank>
        <right_flank>AAATGAACACTCGTTGGTTCCCTAAATGGTCATCTGCCAGCATCTCGAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGATATTGACAGGGTGGCGCTGATAAAACCGGGTATATCTTCAGACATAAGTACCTTGGAATCACGAAAATTGGTTGAAATTTGATTTTAGGTTCGATTCAAAGCTACTGAAATTTTTAAAACGATTCCTCCAGTATAGGTATTGTTATGATTGTCCAAGAATGAAATGTTTCTTGCACGCCGATTTTCATAAGATAAAGCAACTTTGACTAGCGATAACTCATCTCAAAGTTGATCAAATAATTTGAAACTTGGTCAGTTTAATGATGGATTATTTGAATTTTTGTAATTTGAATTTGAGCTCAGTACAATGTTTCACTCCTTTTGTGCTAGCACAAACTTTAGTCCAGGTAATTATGAGCCATCCTGCAGTTACCTAAAAAGCTTTCAGAAAATCATAAATAAAAATTTTCATTTTTAGATCACTCCGAAATCCTTTCATATCTCCTGCAAGCTATTTTTGTTTCCAAAATGTCAGCTTCTCCTTGTTTTTAGACAAAATGAACACTCGTTGGTTCCCTAAATGGTCATCTGCCAGCATCTCGAATTGCAGTTGTTTGTTTATCTCAAAATAAAATTGAACAACGCCTTTCATATCAAGTTTCCAATTTGAAATCATTTTCCAGTTGTACATCAGTTTCCTCATCTTTTCAAACTCTGCTTAGTACGGTAACCCAATATCTTATGGTCACTTTTTTCCGCCAAAAATTTTTTCCTAGCCCCCACTCTTTTTCCCATAATTCAGAGAATGTCACGTTGAACCGGATGGCCACTGGCTGCCGGCTGAATCCAGAGGGAACATCTTCAAGATGTTCGAAGGAACCTCAAACAAGAGAAAAAGAAAAAGAGAGCTGCCGTCGGAGCACCCCGTCATGACAAATGTGTCGATGATGAGTGTGTGTCGGTGTGCATTTTTCTTTTTGACTTTTTCTTGGTTTTGATACATATGGTTTTCTCGAGGGACCACTGGAATAGGGCAGAGGGCTGAAGGAACTCCA</canonical>
            <polymorphic>TTTGATATTGACAGGGTGGCGCTGATAAAACCGGGTATATCTTCAGACATAAGTACCTTGGAATCACGAAAATTGGTTGAAATTTGATTTTAGGTTCGATTCAAAGCTACTGAAATTTTTAAAACGATTCCTCCAGTATAGGTATTGTTATGATTGTCCAAGAATGAAATGTTTCTTGCACGCCGATTTTCATAAGATAAAGCAACTTTGACTAGCGATAACTCATCTCAAAGTTGATCAAATAATTTGAAACTTGGTCAGTTTAATGATGGATTATTTGAATTTTTGTAATTTGAATTTGAGCTCAGTACAATGTTTCACTCCTTTTGTGCTAGCACAAACTTTAGTCCAGGTAATTATGAGCCATCCTGCAGTTACCTAAAAAGCTTTCAGAAAATCATAAATAAAAATTTTCATTTTTAGATCACTCCGAAATCCTTTCATATCTCCTGCAAGCTATTTTTGTTTCCAAAATGTCAGCTTCTCCTTGTTTTTAGACMAAATGAACACTCGTTGGTTCCCTAAATGGTCATCTGCCAGCATCTCGAATTGCAGTTGTTTGTTTATCTCAAAATAAAATTGAACAACGCCTTTCATATCAAGTTTCCAATTTGAAATCATTTTCCAGTTGTACATCAGTTTCCTCATCTTTTCAAACTCTGCTTAGTACGGTAACCCAATATCTTATGGTCACTTTTTTCCGCCAAAAATTTTTTCCTAGCCCCCACTCTTTTTCCCATAATTCAGAGAATGTCACGTTGAACCGGATGGCCACTGGCTGCCGGCTGAATCCAGAGGGAACATCTTCAAGATGTTCGAAGGAACCTCAAACAAGAGAAAAAGAAAAAGAGAGCTGCCGTCGGAGCACCCCGTCATGACAAATGTGTCGATGATGAGTGTGTGTCGGTGTGCATTTTTCTTTTTGACTTTTTCTTGGTTTTGATACATATGGTTTTCTCGAGGGACCACTGGAATAGGGCAGAGGGCTGAAGGAACTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTTCATTTTTAGATCACTCC</pcr_primer_p1>
		<pcr_primer_p2>GAAAAGATGAGGAAACTGATGTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATTTTCATTTTTAGATCACTCCGAAATCCTTTCATATCTCCTGCAAGCTATTTTTGTTTCCAAAATGTCAGCTTCTCCTTGTTTTTAGACAAAATGAACACTCGTTGGTTCCCTAAATGGTCATCTGCCAGCATCTCGAATTGCAGTTGTTTGTTTATCTCAAAATAAAATTGAACAACGCCTTTCATATCAAGTTTCCAATTTGAAATCATTTTCCAGTTGTACATCAGTTTCCTCATCTTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAATTTTCATTTTTAGATCACTCCGAAATCCTTTCATATCTCCTGCAAGCTATTTTTGTTTCCAAAATGTCAGCTTCTCCTTGTTTTTAGACMAAATGAACACTCGTTGGTTCCCTAAATGGTCATCTGCCAGCATCTCGAATTGCAGTTGTTTGTTTATCTCAAAATAAAATTGAACAACGCCTTTCATATCAAGTTTCCAATTTGAAATCATTTTCCAGTTGTACATCAGTTTCCTCATCTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19560</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>240808</contig_pos>
        <strand>+</strand>
        <context>TTGAACAACG[C/G]CTTTCATATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCATCTCGAATTGCAGTTGTTTGTTTATCTCAAAATAAAATTGAACAACG</left_flank>
        <right_flank>CTTTCATATCAAGTTTCCAATTTGAAATCATTTTCCAGTTGTACATCAGT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGTTCGATTCAAAGCTACTGAAATTTTTAAAACGATTCCTCCAGTATAGGTATTGTTATGATTGTCCAAGAATGAAATGTTTCTTGCACGCCGATTTTCATAAGATAAAGCAACTTTGACTAGCGATAACTCATCTCAAAGTTGATCAAATAATTTGAAACTTGGTCAGTTTAATGATGGATTATTTGAATTTTTGTAATTTGAATTTGAGCTCAGTACAATGTTTCACTCCTTTTGTGCTAGCACAAACTTTAGTCCAGGTAATTATGAGCCATCCTGCAGTTACCTAAAAAGCTTTCAGAAAATCATAAATAAAAATTTTCATTTTTAGATCACTCCGAAATCCTTTCATATCTCCTGCAAGCTATTTTTGTTTCCAAAATGTCAGCTTCTCCTTGTTTTTAGACAAAATGAACACTCGTTGGTTCCCTAAATGGTCATCTGCCAGCATCTCGAATTGCAGTTGTTTGTTTATCTCAAAATAAAATTGAACAACGCCTTTCATATCAAGTTTCCAATTTGAAATCATTTTCCAGTTGTACATCAGTTTCCTCATCTTTTCAAACTCTGCTTAGTACGGTAACCCAATATCTTATGGTCACTTTTTTCCGCCAAAAATTTTTTCCTAGCCCCCACTCTTTTTCCCATAATTCAGAGAATGTCACGTTGAACCGGATGGCCACTGGCTGCCGGCTGAATCCAGAGGGAACATCTTCAAGATGTTCGAAGGAACCTCAAACAAGAGAAAAAGAAAAAGAGAGCTGCCGTCGGAGCACCCCGTCATGACAAATGTGTCGATGATGAGTGTGTGTCGGTGTGCATTTTTCTTTTTGACTTTTTCTTGGTTTTGATACATATGGTTTTCTCGAGGGACCACTGGAATAGGGCAGAGGGCTGAAGGAACTCCAGAATACCATAATTCCTTCTCCACGTATTCAATGATTGTGATGTTCTCAAAAATTAGAAAAACAACTTCTGACTGAAGCGTTTGTTATACA</canonical>
            <polymorphic>TAGGTTCGATTCAAAGCTACTGAAATTTTTAAAACGATTCCTCCAGTATAGGTATTGTTATGATTGTCCAAGAATGAAATGTTTCTTGCACGCCGATTTTCATAAGATAAAGCAACTTTGACTAGCGATAACTCATCTCAAAGTTGATCAAATAATTTGAAACTTGGTCAGTTTAATGATGGATTATTTGAATTTTTGTAATTTGAATTTGAGCTCAGTACAATGTTTCACTCCTTTTGTGCTAGCACAAACTTTAGTCCAGGTAATTATGAGCCATCCTGCAGTTACCTAAAAAGCTTTCAGAAAATCATAAATAAAAATTTTCATTTTTAGATCACTCCGAAATCCTTTCATATCTCCTGCAAGCTATTTTTGTTTCCAAAATGTCAGCTTCTCCTTGTTTTTAGACAAAATGAACACTCGTTGGTTCCCTAAATGGTCATCTGCCAGCATCTCGAATTGCAGTTGTTTGTTTATCTCAAAATAAAATTGAACAACGSCTTTCATATCAAGTTTCCAATTTGAAATCATTTTCCAGTTGTACATCAGTTTCCTCATCTTTTCAAACTCTGCTTAGTACGGTAACCCAATATCTTATGGTCACTTTTTTCCGCCAAAAATTTTTTCCTAGCCCCCACTCTTTTTCCCATAATTCAGAGAATGTCACGTTGAACCGGATGGCCACTGGCTGCCGGCTGAATCCAGAGGGAACATCTTCAAGATGTTCGAAGGAACCTCAAACAAGAGAAAAAGAAAAAGAGAGCTGCCGTCGGAGCACCCCGTCATGACAAATGTGTCGATGATGAGTGTGTGTCGGTGTGCATTTTTCTTTTTGACTTTTTCTTGGTTTTGATACATATGGTTTTCTCGAGGGACCACTGGAATAGGGCAGAGGGCTGAAGGAACTCCAGAATACCATAATTCCTTCTCCACGTATTCAATGATTGTGATGTTCTCAAAAATTAGAAAAACAACTTCTGACTGAAGCGTTTGTTATACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTTCATTTTTAGATCACTCC</pcr_primer_p1>
		<pcr_primer_p2>GAAAAGATGAGGAAACTGATGTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATTTTCATTTTTAGATCACTCCGAAATCCTTTCATATCTCCTGCAAGCTATTTTTGTTTCCAAAATGTCAGCTTCTCCTTGTTTTTAGACAAAATGAACACTCGTTGGTTCCCTAAATGGTCATCTGCCAGCATCTCGAATTGCAGTTGTTTGTTTATCTCAAAATAAAATTGAACAACGCCTTTCATATCAAGTTTCCAATTTGAAATCATTTTCCAGTTGTACATCAGTTTCCTCATCTTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAATTTTCATTTTTAGATCACTCCGAAATCCTTTCATATCTCCTGCAAGCTATTTTTGTTTCCAAAATGTCAGCTTCTCCTTGTTTTTAGACAAAATGAACACTCGTTGGTTCCCTAAATGGTCATCTGCCAGCATCTCGAATTGCAGTTGTTTGTTTATCTCAAAATAAAATTGAACAACGSCTTTCATATCAAGTTTCCAATTTGAAATCATTTTCCAGTTGTACATCAGTTTCCTCATCTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19561</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>245509</contig_pos>
        <strand>+</strand>
        <context>AATGTTTAAG[A/C]AAAAAAGTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGGCCAATTTGAAGGTCATGAAAATCTACGAACCTTATCAAATGTTTAAG</left_flank>
        <right_flank>AAAAAAGTGTTTCCCTTCATTAAAAGGTGCCCTTCTAATAGAGGCTTTAC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAATATTTTTTTAAAGTTAAAGTTAAAAATAAATTGGAAGCAATTTTTTGGCTGTGATAAATTTCTACATGTTAACTTTATTTTTTTTTTAGAAATTTATTTTGTTGTCATTAGTATGTATTAAAAGGGCTGGCCCTTCTATTTTTTCCCCATGGTACCTCAGGAGGGCCCTTCAATTAGAGGCGATTCTTCTATTTTTCCGACTTTGTTTTCGCTTCAAAATACGATTTCAAGCAACTTTTAATCTAGTTTTAAGTCAATTTTTGACCAATTTCAGGCCATTCTAAGCACATTGTAAGCCAATTTTAAGCTAATTTTACGCCAATTTTAAGCTAATTTTAAGTTAATTTGAGCCAATTTTAAGCCAGTTTTGAGCGAATTTGGAGCCAAATTTAAGCCTATTTTGAGCTGATTTTCAGCCAAATTCAAGACAATTCATGCCAATTTAGGCCAATTTGAAGGTCATGAAAATCTACGAACCTTATCAAATGTTTAAGAAAAAAAGTGTTTCCCTTCATTAAAAGGTGCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCTTTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTTTTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCATAGCCTATAACGATTTGAGACTAGGTTGAATAAATGAGTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACAATGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTTATTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGATATTCTTGGTATAAGTATATGTCTTCTGATTTTTCATTCCACATTCTTTTTCTTTTTCTGTTTCTCATGTTTCGTT</canonical>
            <polymorphic>TGGAATATTTTTTTAAAGTTAAAGTTAAAAATAAATTGGAAGCAATTTTTTGGCTGTGATAAATTTCTACATGTTAACTTTATTTTTTTTTTAGAAATTTATTTTGTTGTCATTAGTATGTATTAAAAGGGCTGGCCCTTCTATTTTTTCCCCATGGTACCTCAGGAGGGCCCTTCAATTAGAGGCGATTCTTCTATTTTTCCGACTTTGTTTTCGCTTCAAAATACGATTTCAAGCAACTTTTAATCTAGTTTTAAGTCAATTTTTGACCAATTTCAGGCCATTCTAAGCACATTGTAAGCCAATTTTAAGCTAATTTTACGCCAATTTTAAGCTAATTTTAAGTTAATTTGAGCCAATTTTAAGCCAGTTTTGAGCGAATTTGGAGCCAAATTTAAGCCTATTTTGAGCTGATTTTCAGCCAAATTCAAGACAATTCATGCCAATTTAGGCCAATTTGAAGGTCATGAAAATCTACGAACCTTATCAAATGTTTAAGMAAAAAAGTGTTTCCCTTCATTAAAAGGTGCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCTTTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTTTTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCATAGCCTATAACGATTTGAGACTAGGTTGAATAAATGAGTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACAATGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTTATTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGATATTCTTGGTATAAGTATATGTCTTCTGATTTTTCATTCCACATTCTTTTTCTTTTTCTGTTTCTCATGTTTCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCGCTTCAAAATACGA</pcr_primer_p1>
		<pcr_primer_p2>TTTCCCGTAAAGCCTCTATTA</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCGCTTCAAAATACGATTTCAAGCAACTTTTAATCTAGTTTTAAGTCAATTTTTGACCAATTTCAGGCCATTCTAAGCACATTGTAAGCCAATTTTAAGCTAATTTTACGCCAATTTTAAGCTAATTTTAAGTTAATTTGAGCCAATTTTAAGCCAGTTTTGAGCGAATTTGGAGCCAAATTTAAGCCTATTTTGAGCTGATTTTCAGCCAAATTCAAGACAATTCATGCCAATTTAGGCCAATTTGAAGGTCATGAAAATCTACGAACCTTATCAAATGTTTAAGAAAAAAAGTGTTTCCCTTCATTAAAAGGTGCCCTTCTAATAGAGGCTTTACGGGAAA</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCGCTTCAAAATACGATTTCAAGCAACTTTTAATCTAGTTTTAAGTCAATTTTTGACCAATTTCAGGCCATTCTAAGCACATTGTAAGCCAATTTTAAGCTAATTTTACGCCAATTTTAAGCTAATTTTAAGTTAATTTGAGCCAATTTTAAGCCAGTTTTGAGCGAATTTGGAGCCAAATTTAAGCCTATTTTGAGCTGATTTTCAGCCAAATTCAAGACAATTCATGCCAATTTAGGCCAATTTGAAGGTCATGAAAATCTACGAACCTTATCAAATGTTTAAGMAAAAAAGTGTTTCCCTTCATTAAAAGGTGCCCTTCTAATAGAGGCTTTACGGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19562</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>245951</contig_pos>
        <strand>+</strand>
        <context>GGTATAAGTA[C/T]ATGTCTTCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAAAAGAAGAAGAGGTACAAAAAACGGCTAGATATTCTTGGTATAAGTA</left_flank>
        <right_flank>ATGTCTTCTGATTTTTCATTCCACATTCTTTTTCTTTTTCTGTTTCTCAT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAATTTAGGCCAATTTGAAGGTCATGAAAATCTACGAACCTTATCAAATGTTTAAGAAAAAAAGTGTTTCCCTTCATTAAAAGGTGCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCTTTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTTTTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCATAGCCTATAACGATTTGAGACTAGGTTGAATAAATGAGTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACAATGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTTATTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGATATTCTTGGTATAAGTATATGTCTTCTGATTTTTCATTCCACATTCTTTTTCTTTTTCTGTTTCTCATGTTTCGTTTTTTTTGTTTGAGATCCAATTATGTTTGGTGTACTGGAAGGTCCAATAAAAGCTAAATAGAGCAGTTTCATGGGGTGAAAATAAGATATCAGGTTTCGAAGACGCCAGATTTGTGACTAGAGGTTTAAGTGATCAAGGTTTTTTATAAATTCCATAAACTCTCGAACTGTGACCTAGACCATCAAAACTCAAAAACGAGATAGAGAAGGATCAACTTTTTGACCTGATCTGCTGCATCGTTTTTTATTCTTTTCATCTTTATGGCTCAAAAGCTTTCCGCGAGTAATTAGAAGAACGTTAAGAAATTTGACCCTGTTTAAGTCCTCATCTTCCTCCGCCCACAGAGGGGAGAGAGAAATCTATACTTTTTCAACTTTTCACACTTTTTTTATTTCTTCTCTTTTACAGCATCATGATTCTGGACTGGGAAGGTAGCGAGAAC</canonical>
            <polymorphic>CCAATTTAGGCCAATTTGAAGGTCATGAAAATCTACGAACCTTATCAAATGTTTAAGAAAAAAAGTGTTTCCCTTCATTAAAAGGTGCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCTTTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTTTTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCATAGCCTATAACGATTTGAGACTAGGTTGAATAAATGAGTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACAATGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTTATTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGATATTCTTGGTATAAGTAYATGTCTTCTGATTTTTCATTCCACATTCTTTTTCTTTTTCTGTTTCTCATGTTTCGTTTTTTTTGTTTGAGATCCAATTATGTTTGGTGTACTGGAAGGTCCAATAAAAGCTAAATAGAGCAGTTTCATGGGGTGAAAATAAGATATCAGGTTTCGAAGACGCCAGATTTGTGACTAGAGGTTTAAGTGATCAAGGTTTTTTATAAATTCCATAAACTCTCGAACTGTGACCTAGACCATCAAAACTCAAAAACGAGATAGAGAAGGATCAACTTTTTGACCTGATCTGCTGCATCGTTTTTTATTCTTTTCATCTTTATGGCTCAAAAGCTTTCCGCGAGTAATTAGAAGAACGTTAAGAAATTTGACCCTGTTTAAGTCCTCATCTTCCTCCGCCCACAGAGGGGAGAGAGAAATCTATACTTTTTCAACTTTTCACACTTTTTTTATTTCTTCTCTTTTACAGCATCATGATTCTGGACTGGGAAGGTAGCGAGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGAAATATTCTGAGAAGCTCAA</pcr_primer_p1>
		<pcr_primer_p2>GAAACATGAGAAACAGAAAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACAATGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTTATTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGATATTCTTGGTATAAGTATATGTCTTCTGATTTTTCATTCCACATTCTTTTTCTTTTTCTGTTTCTCATGTTTC</canonical_amplicon>
		<polymorphic_amplicon>GTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACAATGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTTATTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGATATTCTTGGTATAAGTAYATGTCTTCTGATTTTTCATTCCACATTCTTTTTCTTTTTCTGTTTCTCATGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19563</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>245935</contig_pos>
        <strand>+</strand>
        <context>ACGGCTAGAK[A/G]TTCTTGGTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGAT</left_flank>
        <right_flank>TTCTTGGTATAAGTATATGTCTTCTGATTTTTCATTCCACATTCTTTTTC</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAAGACAATTCATGCCAATTTAGGCCAATTTGAAGGTCATGAAAATCTACGAACCTTATCAAATGTTTAAGAAAAAAAGTGTTTCCCTTCATTAAAAGGTGCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCTTTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTTTTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCATAGCCTATAACGATTTGAGACTAGGTTGAATAAATGAGTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACAATGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTTATTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGATATTCTTGGTATAAGTATATGTCTTCTGATTTTTCATTCCACATTCTTTTTCTTTTTCTGTTTCTCATGTTTCGTTTTTTTTGTTTGAGATCCAATTATGTTTGGTGTACTGGAAGGTCCAATAAAAGCTAAATAGAGCAGTTTCATGGGGTGAAAATAAGATATCAGGTTTCGAAGACGCCAGATTTGTGACTAGAGGTTTAAGTGATCAAGGTTTTTTATAAATTCCATAAACTCTCGAACTGTGACCTAGACCATCAAAACTCAAAAACGAGATAGAGAAGGATCAACTTTTTGACCTGATCTGCTGCATCGTTTTTTATTCTTTTCATCTTTATGGCTCAAAAGCTTTCCGCGAGTAATTAGAAGAACGTTAAGAAATTTGACCCTGTTTAAGTCCTCATCTTCCTCCGCCCACAGAGGGGAGAGAGAAATCTATACTTTTTCAACTTTTCACACTTTTTTTATTTCTTCTCTTTTACAGCATCATGATTCTGGACTG</canonical>
            <polymorphic>TTCAAGACAATTCATGCCAATTTAGGCCAATTTGAAGGTCATGAAAATCTACGAACCTTATCAAATGTTTAAGAAAAAAAGTGTTTCCCTTCATTAAAAGGTGCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCTTTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTTTTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCATAGCCTATAACGATTTGAGACTAGGTTGAATAAATGAGTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACAATGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTTATTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGATRTTCTTGGTATAAGTATATGTCTTCTGATTTTTCATTCCACATTCTTTTTCTTTTTCTGTTTCTCATGTTTCGTTTTTTTTGTTTGAGATCCAATTATGTTTGGTGTACTGGAAGGTCCAATAAAAGCTAAATAGAGCAGTTTCATGGGGTGAAAATAAGATATCAGGTTTCGAAGACGCCAGATTTGTGACTAGAGGTTTAAGTGATCAAGGTTTTTTATAAATTCCATAAACTCTCGAACTGTGACCTAGACCATCAAAACTCAAAAACGAGATAGAGAAGGATCAACTTTTTGACCTGATCTGCTGCATCGTTTTTTATTCTTTTCATCTTTATGGCTCAAAAGCTTTCCGCGAGTAATTAGAAGAACGTTAAGAAATTTGACCCTGTTTAAGTCCTCATCTTCCTCCGCCCACAGAGGGGAGAGAGAAATCTATACTTTTTCAACTTTTCACACTTTTTTTATTTCTTCTCTTTTACAGCATCATGATTCTGGACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGAAATATTCTGAGAAGCTCAA</pcr_primer_p1>
		<pcr_primer_p2>GAAACATGAGAAACAGAAAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACAATGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTTATTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGATATTCTTGGTATAAGTATATGTCTTCTGATTTTTCATTCCACATTCTTTTTCTTTTTCTGTTTCTCATGTTTC</canonical_amplicon>
		<polymorphic_amplicon>GTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACAATGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTTATTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGATRTTCTTGGTATAAGTATATGTCTTCTGATTTTTCATTCCACATTCTTTTTCTTTTTCTGTTTCTCATGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19564</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>245934</contig_pos>
        <strand>+</strand>
        <context>AACGGCTAGA[G/T]RTTCTTGGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGA</left_flank>
        <right_flank>ATTCTTGGTATAAGTATATGTCTTCTGATTTTTCATTCCACATTCTTTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCAAGACAATTCATGCCAATTTAGGCCAATTTGAAGGTCATGAAAATCTACGAACCTTATCAAATGTTTAAGAAAAAAAGTGTTTCCCTTCATTAAAAGGTGCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCTTTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTTTTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCATAGCCTATAACGATTTGAGACTAGGTTGAATAAATGAGTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACAATGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTTATTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGATATTCTTGGTATAAGTATATGTCTTCTGATTTTTCATTCCACATTCTTTTTCTTTTTCTGTTTCTCATGTTTCGTTTTTTTTGTTTGAGATCCAATTATGTTTGGTGTACTGGAAGGTCCAATAAAAGCTAAATAGAGCAGTTTCATGGGGTGAAAATAAGATATCAGGTTTCGAAGACGCCAGATTTGTGACTAGAGGTTTAAGTGATCAAGGTTTTTTATAAATTCCATAAACTCTCGAACTGTGACCTAGACCATCAAAACTCAAAAACGAGATAGAGAAGGATCAACTTTTTGACCTGATCTGCTGCATCGTTTTTTATTCTTTTCATCTTTATGGCTCAAAAGCTTTCCGCGAGTAATTAGAAGAACGTTAAGAAATTTGACCCTGTTTAAGTCCTCATCTTCCTCCGCCCACAGAGGGGAGAGAGAAATCTATACTTTTTCAACTTTTCACACTTTTTTTATTTCTTCTCTTTTACAGCATCATGATTCTGGACT</canonical>
            <polymorphic>ATTCAAGACAATTCATGCCAATTTAGGCCAATTTGAAGGTCATGAAAATCTACGAACCTTATCAAATGTTTAAGAAAAAAAGTGTTTCCCTTCATTAAAAGGTGCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCTTTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTTTTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCATAGCCTATAACGATTTGAGACTAGGTTGAATAAATGAGTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACAATGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTTATTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGAKATTCTTGGTATAAGTATATGTCTTCTGATTTTTCATTCCACATTCTTTTTCTTTTTCTGTTTCTCATGTTTCGTTTTTTTTGTTTGAGATCCAATTATGTTTGGTGTACTGGAAGGTCCAATAAAAGCTAAATAGAGCAGTTTCATGGGGTGAAAATAAGATATCAGGTTTCGAAGACGCCAGATTTGTGACTAGAGGTTTAAGTGATCAAGGTTTTTTATAAATTCCATAAACTCTCGAACTGTGACCTAGACCATCAAAACTCAAAAACGAGATAGAGAAGGATCAACTTTTTGACCTGATCTGCTGCATCGTTTTTTATTCTTTTCATCTTTATGGCTCAAAAGCTTTCCGCGAGTAATTAGAAGAACGTTAAGAAATTTGACCCTGTTTAAGTCCTCATCTTCCTCCGCCCACAGAGGGGAGAGAGAAATCTATACTTTTTCAACTTTTCACACTTTTTTTATTTCTTCTCTTTTACAGCATCATGATTCTGGACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGAAATATTCTGAGAAGCTCAA</pcr_primer_p1>
		<pcr_primer_p2>GAAACATGAGAAACAGAAAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACAATGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTTATTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGATATTCTTGGTATAAGTATATGTCTTCTGATTTTTCATTCCACATTCTTTTTCTTTTTCTGTTTCTCATGTTTC</canonical_amplicon>
		<polymorphic_amplicon>GTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACAATGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTTATTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGAKATTCTTGGTATAAGTATATGTCTTCTGATTTTTCATTCCACATTCTTTTTCTTTTTCTGTTTCTCATGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19565</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>245856</contig_pos>
        <strand>+</strand>
        <context>AAATTGAGTT[A/C]TTTGTGTACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTT</left_flank>
        <right_flank>TTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTGAGCCAATTTTAAGCCAGTTTTGAGCGAATTTGGAGCCAAATTTAAGCCTATTTTGAGCTGATTTTCAGCCAAATTCAAGACAATTCATGCCAATTTAGGCCAATTTGAAGGTCATGAAAATCTACGAACCTTATCAAATGTTTAAGAAAAAAAGTGTTTCCCTTCATTAAAAGGTGCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCTTTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTTTTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCATAGCCTATAACGATTTGAGACTAGGTTGAATAAATGAGTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACAATGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTTATTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGATATTCTTGGTATAAGTATATGTCTTCTGATTTTTCATTCCACATTCTTTTTCTTTTTCTGTTTCTCATGTTTCGTTTTTTTTGTTTGAGATCCAATTATGTTTGGTGTACTGGAAGGTCCAATAAAAGCTAAATAGAGCAGTTTCATGGGGTGAAAATAAGATATCAGGTTTCGAAGACGCCAGATTTGTGACTAGAGGTTTAAGTGATCAAGGTTTTTTATAAATTCCATAAACTCTCGAACTGTGACCTAGACCATCAAAACTCAAAAACGAGATAGAGAAGGATCAACTTTTTGACCTGATCTGCTGCATCGTTTTTTATTCTTTTCATCTTTATGGCTCAAAAGCTTTCCGCGAGTAATTAGAAGAACGTTAAGAAATTTGACCCTGTTTAAGTCCTCATCTTCCTCCGCCCACAGAGG</canonical>
            <polymorphic>AATTTGAGCCAATTTTAAGCCAGTTTTGAGCGAATTTGGAGCCAAATTTAAGCCTATTTTGAGCTGATTTTCAGCCAAATTCAAGACAATTCATGCCAATTTAGGCCAATTTGAAGGTCATGAAAATCTACGAACCTTATCAAATGTTTAAGAAAAAAAGTGTTTCCCTTCATTAAAAGGTGCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCTTTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTTTTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCATAGCCTATAACGATTTGAGACTAGGTTGAATAAATGAGTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACAATGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTTMTTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGATATTCTTGGTATAAGTATATGTCTTCTGATTTTTCATTCCACATTCTTTTTCTTTTTCTGTTTCTCATGTTTCGTTTTTTTTGTTTGAGATCCAATTATGTTTGGTGTACTGGAAGGTCCAATAAAAGCTAAATAGAGCAGTTTCATGGGGTGAAAATAAGATATCAGGTTTCGAAGACGCCAGATTTGTGACTAGAGGTTTAAGTGATCAAGGTTTTTTATAAATTCCATAAACTCTCGAACTGTGACCTAGACCATCAAAACTCAAAAACGAGATAGAGAAGGATCAACTTTTTGACCTGATCTGCTGCATCGTTTTTTATTCTTTTCATCTTTATGGCTCAAAAGCTTTCCGCGAGTAATTAGAAGAACGTTAAGAAATTTGACCCTGTTTAAGTCCTCATCTTCCTCCGCCCACAGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGAAATATTCTGAGAAGCTCAA</pcr_primer_p1>
		<pcr_primer_p2>GAAACATGAGAAACAGAAAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACAATGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTTATTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGATATTCTTGGTATAAGTATATGTCTTCTGATTTTTCATTCCACATTCTTTTTCTTTTTCTGTTTCTCATGTTTC</canonical_amplicon>
		<polymorphic_amplicon>GTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACAATGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTTMTTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGATATTCTTGGTATAAGTATATGTCTTCTGATTTTTCATTCCACATTCTTTTTCTTTTTCTGTTTCTCATGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19566</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>245797</contig_pos>
        <strand>+</strand>
        <context>AAGGGATACA[A/T]TGTTTTCGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGAATAAATGAGTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACA</left_flank>
        <right_flank>TGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCACATTGTAAGCCAATTTTAAGCTAATTTTACGCCAATTTTAAGCTAATTTTAAGTTAATTTGAGCCAATTTTAAGCCAGTTTTGAGCGAATTTGGAGCCAAATTTAAGCCTATTTTGAGCTGATTTTCAGCCAAATTCAAGACAATTCATGCCAATTTAGGCCAATTTGAAGGTCATGAAAATCTACGAACCTTATCAAATGTTTAAGAAAAAAAGTGTTTCCCTTCATTAAAAGGTGCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCTTTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTTTTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCATAGCCTATAACGATTTGAGACTAGGTTGAATAAATGAGTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACAATGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTTATTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGATATTCTTGGTATAAGTATATGTCTTCTGATTTTTCATTCCACATTCTTTTTCTTTTTCTGTTTCTCATGTTTCGTTTTTTTTGTTTGAGATCCAATTATGTTTGGTGTACTGGAAGGTCCAATAAAAGCTAAATAGAGCAGTTTCATGGGGTGAAAATAAGATATCAGGTTTCGAAGACGCCAGATTTGTGACTAGAGGTTTAAGTGATCAAGGTTTTTTATAAATTCCATAAACTCTCGAACTGTGACCTAGACCATCAAAACTCAAAAACGAGATAGAGAAGGATCAACTTTTTGACCTGATCTGCTGCATCGTTTTTTATTCTTTTCATCTTTATGGCTCAAAAGCTTTCCGCGAGTAATT</canonical>
            <polymorphic>AGCACATTGTAAGCCAATTTTAAGCTAATTTTACGCCAATTTTAAGCTAATTTTAAGTTAATTTGAGCCAATTTTAAGCCAGTTTTGAGCGAATTTGGAGCCAAATTTAAGCCTATTTTGAGCTGATTTTCAGCCAAATTCAAGACAATTCATGCCAATTTAGGCCAATTTGAAGGTCATGAAAATCTACGAACCTTATCAAATGTTTAAGAAAAAAAGTGTTTCCCTTCATTAAAAGGTGCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCTTTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTTTTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCATAGCCTATAACGATTTGAGACTAGGTTGAATAAATGAGTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACAWTGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTTATTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGATATTCTTGGTATAAGTATATGTCTTCTGATTTTTCATTCCACATTCTTTTTCTTTTTCTGTTTCTCATGTTTCGTTTTTTTTGTTTGAGATCCAATTATGTTTGGTGTACTGGAAGGTCCAATAAAAGCTAAATAGAGCAGTTTCATGGGGTGAAAATAAGATATCAGGTTTCGAAGACGCCAGATTTGTGACTAGAGGTTTAAGTGATCAAGGTTTTTTATAAATTCCATAAACTCTCGAACTGTGACCTAGACCATCAAAACTCAAAAACGAGATAGAGAAGGATCAACTTTTTGACCTGATCTGCTGCATCGTTTTTTATTCTTTTCATCTTTATGGCTCAAAAGCTTTCCGCGAGTAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATTTGAGACTAGGTTGAATAA</pcr_primer_p1>
		<pcr_primer_p2>AGAATGTGGAATGAAAAATCAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGATTTGAGACTAGGTTGAATAAATGAGTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACAATGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTTATTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGATATTCTTGGTATAAGTATATGTCTTCTGATTTTTCATTCCACATTCT</canonical_amplicon>
		<polymorphic_amplicon>CGATTTGAGACTAGGTTGAATAAATGAGTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACAWTGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTTATTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGATATTCTTGGTATAAGTATATGTCTTCTGATTTTTCATTCCACATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19567</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>245726</contig_pos>
        <strand>+</strand>
        <context>ACTCCATAGY[C/T]TATAACGATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCATAGC</left_flank>
        <right_flank>TATAACGATTTGAGACTAGGTTGAATAAATGAGTGAAATATTCTGAGAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAAAATACGATTTCAAGCAACTTTTAATCTAGTTTTAAGTCAATTTTTGACCAATTTCAGGCCATTCTAAGCACATTGTAAGCCAATTTTAAGCTAATTTTACGCCAATTTTAAGCTAATTTTAAGTTAATTTGAGCCAATTTTAAGCCAGTTTTGAGCGAATTTGGAGCCAAATTTAAGCCTATTTTGAGCTGATTTTCAGCCAAATTCAAGACAATTCATGCCAATTTAGGCCAATTTGAAGGTCATGAAAATCTACGAACCTTATCAAATGTTTAAGAAAAAAAGTGTTTCCCTTCATTAAAAGGTGCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCTTTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTTTTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCATAGCCTATAACGATTTGAGACTAGGTTGAATAAATGAGTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACAATGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTTATTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGATATTCTTGGTATAAGTATATGTCTTCTGATTTTTCATTCCACATTCTTTTTCTTTTTCTGTTTCTCATGTTTCGTTTTTTTTGTTTGAGATCCAATTATGTTTGGTGTACTGGAAGGTCCAATAAAAGCTAAATAGAGCAGTTTCATGGGGTGAAAATAAGATATCAGGTTTCGAAGACGCCAGATTTGTGACTAGAGGTTTAAGTGATCAAGGTTTTTTATAAATTCCATAAACTCTCGAACTGTGACCTAGACCATCAAAACTCAAAAACGAGATAGAGAAGGATCAACTT</canonical>
            <polymorphic>TTCAAAATACGATTTCAAGCAACTTTTAATCTAGTTTTAAGTCAATTTTTGACCAATTTCAGGCCATTCTAAGCACATTGTAAGCCAATTTTAAGCTAATTTTACGCCAATTTTAAGCTAATTTTAAGTTAATTTGAGCCAATTTTAAGCCAGTTTTGAGCGAATTTGGAGCCAAATTTAAGCCTATTTTGAGCTGATTTTCAGCCAAATTCAAGACAATTCATGCCAATTTAGGCCAATTTGAAGGTCATGAAAATCTACGAACCTTATCAAATGTTTAAGAAAAAAAGTGTTTCCCTTCATTAAAAGGTGCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCTTTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTTTTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCATAGCYTATAACGATTTGAGACTAGGTTGAATAAATGAGTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACAATGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTTATTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGATATTCTTGGTATAAGTATATGTCTTCTGATTTTTCATTCCACATTCTTTTTCTTTTTCTGTTTCTCATGTTTCGTTTTTTTTGTTTGAGATCCAATTATGTTTGGTGTACTGGAAGGTCCAATAAAAGCTAAATAGAGCAGTTTCATGGGGTGAAAATAAGATATCAGGTTTCGAAGACGCCAGATTTGTGACTAGAGGTTTAAGTGATCAAGGTTTTTTATAAATTCCATAAACTCTCGAACTGTGACCTAGACCATCAAAACTCAAAAACGAGATAGAGAAGGATCAACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>165 152 133 97 92 74 63 52 31 22 22 21 21 11 11 11 11 11</canonical_bands>
                <polymorphic_bands>165 152 149 133 92 74 63 31 22 22 21 21 11 11 11 11 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCCTTCTAATAGAGGCTTTAC</pcr_primer_p1>
		<pcr_primer_p2>TTGAGCTTCTCAGAATATTTCAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCTTTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTTTTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCATAGCCTATAACGATTTGAGACTAGGTTGAATAAATGAGTGAAATATTCTGAGAAGCTCAA</canonical_amplicon>
		<polymorphic_amplicon>GCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCTTTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTTTTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCATAGCYTATAACGATTTGAGACTAGGTTGAATAAATGAGTGAAATATTCTGAGAAGCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19568</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>245725</contig_pos>
        <strand>+</strand>
        <context>TACTCCATAG[C/T]YTATAACGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCATAG</left_flank>
        <right_flank>CTATAACGATTTGAGACTAGGTTGAATAAATGAGTGAAATATTCTGAGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCAAAATACGATTTCAAGCAACTTTTAATCTAGTTTTAAGTCAATTTTTGACCAATTTCAGGCCATTCTAAGCACATTGTAAGCCAATTTTAAGCTAATTTTACGCCAATTTTAAGCTAATTTTAAGTTAATTTGAGCCAATTTTAAGCCAGTTTTGAGCGAATTTGGAGCCAAATTTAAGCCTATTTTGAGCTGATTTTCAGCCAAATTCAAGACAATTCATGCCAATTTAGGCCAATTTGAAGGTCATGAAAATCTACGAACCTTATCAAATGTTTAAGAAAAAAAGTGTTTCCCTTCATTAAAAGGTGCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCTTTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTTTTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCATAGCCTATAACGATTTGAGACTAGGTTGAATAAATGAGTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACAATGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTTATTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGATATTCTTGGTATAAGTATATGTCTTCTGATTTTTCATTCCACATTCTTTTTCTTTTTCTGTTTCTCATGTTTCGTTTTTTTTGTTTGAGATCCAATTATGTTTGGTGTACTGGAAGGTCCAATAAAAGCTAAATAGAGCAGTTTCATGGGGTGAAAATAAGATATCAGGTTTCGAAGACGCCAGATTTGTGACTAGAGGTTTAAGTGATCAAGGTTTTTTATAAATTCCATAAACTCTCGAACTGTGACCTAGACCATCAAAACTCAAAAACGAGATAGAGAAGGATCAACT</canonical>
            <polymorphic>CTTCAAAATACGATTTCAAGCAACTTTTAATCTAGTTTTAAGTCAATTTTTGACCAATTTCAGGCCATTCTAAGCACATTGTAAGCCAATTTTAAGCTAATTTTACGCCAATTTTAAGCTAATTTTAAGTTAATTTGAGCCAATTTTAAGCCAGTTTTGAGCGAATTTGGAGCCAAATTTAAGCCTATTTTGAGCTGATTTTCAGCCAAATTCAAGACAATTCATGCCAATTTAGGCCAATTTGAAGGTCATGAAAATCTACGAACCTTATCAAATGTTTAAGAAAAAAAGTGTTTCCCTTCATTAAAAGGTGCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCTTTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTTTTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCATAGYCTATAACGATTTGAGACTAGGTTGAATAAATGAGTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACAATGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTTATTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGATATTCTTGGTATAAGTATATGTCTTCTGATTTTTCATTCCACATTCTTTTTCTTTTTCTGTTTCTCATGTTTCGTTTTTTTTGTTTGAGATCCAATTATGTTTGGTGTACTGGAAGGTCCAATAAAAGCTAAATAGAGCAGTTTCATGGGGTGAAAATAAGATATCAGGTTTCGAAGACGCCAGATTTGTGACTAGAGGTTTAAGTGATCAAGGTTTTTTATAAATTCCATAAACTCTCGAACTGTGACCTAGACCATCAAAACTCAAAAACGAGATAGAGAAGGATCAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>164 152 133 97 92 74 64 52 31 22 22 21 21 11 11 11 11 11</canonical_bands>
                <polymorphic_bands>164 152 149 133 92 74 64 31 22 22 21 21 11 11 11 11 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCCTTCTAATAGAGGCTTTAC</pcr_primer_p1>
		<pcr_primer_p2>TTGAGCTTCTCAGAATATTTCAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCTTTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTTTTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCATAGCCTATAACGATTTGAGACTAGGTTGAATAAATGAGTGAAATATTCTGAGAAGCTCAA</canonical_amplicon>
		<polymorphic_amplicon>GCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCTTTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTTTTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCATAGYCTATAACGATTTGAGACTAGGTTGAATAAATGAGTGAAATATTCTGAGAAGCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19569</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>245634</contig_pos>
        <strand>+</strand>
        <context>TCAGCTCCTT[G/T]TTTCAATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTTTTTCTTTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTT</left_flank>
        <right_flank>TTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGGGCTGGCCCTTCTATTTTTTCCCCATGGTACCTCAGGAGGGCCCTTCAATTAGAGGCGATTCTTCTATTTTTCCGACTTTGTTTTCGCTTCAAAATACGATTTCAAGCAACTTTTAATCTAGTTTTAAGTCAATTTTTGACCAATTTCAGGCCATTCTAAGCACATTGTAAGCCAATTTTAAGCTAATTTTACGCCAATTTTAAGCTAATTTTAAGTTAATTTGAGCCAATTTTAAGCCAGTTTTGAGCGAATTTGGAGCCAAATTTAAGCCTATTTTGAGCTGATTTTCAGCCAAATTCAAGACAATTCATGCCAATTTAGGCCAATTTGAAGGTCATGAAAATCTACGAACCTTATCAAATGTTTAAGAAAAAAAGTGTTTCCCTTCATTAAAAGGTGCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCTTTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTTTTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCATAGCCTATAACGATTTGAGACTAGGTTGAATAAATGAGTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACAATGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTTATTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGATATTCTTGGTATAAGTATATGTCTTCTGATTTTTCATTCCACATTCTTTTTCTTTTTCTGTTTCTCATGTTTCGTTTTTTTTGTTTGAGATCCAATTATGTTTGGTGTACTGGAAGGTCCAATAAAAGCTAAATAGAGCAGTTTCATGGGGTGAAAATAAGATATCAGGTTTCGAAGACGCCAGATTTGTGACTAGAGGTT</canonical>
            <polymorphic>AAAGGGCTGGCCCTTCTATTTTTTCCCCATGGTACCTCAGGAGGGCCCTTCAATTAGAGGCGATTCTTCTATTTTTCCGACTTTGTTTTCGCTTCAAAATACGATTTCAAGCAACTTTTAATCTAGTTTTAAGTCAATTTTTGACCAATTTCAGGCCATTCTAAGCACATTGTAAGCCAATTTTAAGCTAATTTTACGCCAATTTTAAGCTAATTTTAAGTTAATTTGAGCCAATTTTAAGCCAGTTTTGAGCGAATTTGGAGCCAAATTTAAGCCTATTTTGAGCTGATTTTCAGCCAAATTCAAGACAATTCATGCCAATTTAGGCCAATTTGAAGGTCATGAAAATCTACGAACCTTATCAAATGTTTAAGAAAAAAAGTGTTTCCCTTCATTAAAAGGTGCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCTTTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTKTTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCATAGCCTATAACGATTTGAGACTAGGTTGAATAAATGAGTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACAATGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTTATTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGATATTCTTGGTATAAGTATATGTCTTCTGATTTTTCATTCCACATTCTTTTTCTTTTTCTGTTTCTCATGTTTCGTTTTTTTTGTTTGAGATCCAATTATGTTTGGTGTACTGGAAGGTCCAATAAAAGCTAAATAGAGCAGTTTCATGGGGTGAAAATAAGATATCAGGTTTCGAAGACGCCAGATTTGTGACTAGAGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCATGAAAATCTACGAACCTTA</pcr_primer_p1>
		<pcr_primer_p2>TGGAGTACAACAGAGAAGATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCATGAAAATCTACGAACCTTATCAAATGTTTAAGAAAAAAAGTGTTTCCCTTCATTAAAAGGTGCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCTTTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTTTTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCA</canonical_amplicon>
		<polymorphic_amplicon>GTCATGAAAATCTACGAACCTTATCAAATGTTTAAGAAAAAAAGTGTTTCCCTTCATTAAAAGGTGCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCTTTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTKTTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19571</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>314283</contig_pos>
        <strand></strand>
        <context>TGCGACTTTT[T/C]GAACATTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTTTTTCATAGTCTTGAATCTCTCCGAAGTCCTAAAAAAATGCGACTTTT</left_flank>
        <right_flank>GAACATTTGAATGATTTACCTATTTACCTCAATTATGCCAATATGAGGAG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAATTTATCGGTTAGGTGTCGTAGAAAGAAGACAAATACTCGCTGTATGGCAATCACTAAATTTGAGAAAAGAATGGAATAATGAAAGAAGTCAATAGTATAAGCCATTATCATAAACATCGCTGAAGGTTATCTGATTTTAGTTGGGTTCTTGATAAAGGACTTCTCACGAGATTGAGCAATCTCTGCGGAAATCAAGGACAGGGCAGCTGGGACATTGATAAGCAGGTTTAGAGTGGATATCAGAAATGCTGATATTGTGAGCTGGGATAAAAACCAGAAGAATTTTATCTGTAACAAAAAAGTTTATACTTTTCTTTCCGGAAGCAATACCGGTTTAAAATGGTTCCATAGAAAAATGGAAACAATTATGAAAGTTGCAGTGAGTAGTGTTGAAAAAATTGTGACTATAACAAAGAGTAAAACCGCGAAATAGTATACAAACCCTTTTTCATAGTCTTGAATCTCTCCGAAGTCCTAAAAAAATGCGACTTTTTGAACATTTGAATGATTTACCTATTTACCTCAATTATGCCAATATGAGGAGATCTAGTGGTAAAAACCATGATTTCAAAATTTAAAGAACAGTAGCCGAATAGTTTGTAGGTCAAACAGACTGGCAAAATATAACTGTTGTCAAGTCTTTTCCGAATATTCTAGTAGTTGAATGTCACGTAGGTGTGATAGCCCAGGTTTGCAGGTGATATCCAAAATATCAACCTATATTGAATAGGGGCTTTTTGAGTATTCTAATCTCAATAGTCAAAAAAGCAATTTAACAATCTGGGATATTGCTTGGAGATAAAAAATGATCTAGATTACTTTTATTTGAGTTAGGCAGAGATAATTTGAAAAAATTAAAATCAGGAACTGAAGAGGAAATTAAAAAGGTTGGTTCTGCCTTTTTAATTAAAGGTCCAGCAGCTGAAAAATGTCCACACAGTCAGTAGGAGATGAGTAATAAAATAAGAAATGCATCATCAATTTCCAAGCATTC</canonical>
            <polymorphic>GAAAAATTTATCGGTTAGGTGTCGTAGAAAGAAGACAAATACTCGCTGTATGGCAATCACTAAATTTGAGAAAAGAATGGAATAATGAAAGAAGTCAATAGTATAAGCCATTATCATAAACATCGCTGAAGGTTATCTGATTTTAGTTGGGTTCTTGATAAAGGACTTCTCACGAGATTGAGCAATCTCTGCGGAAATCAAGGACAGGGCAGCTGGGACATTGATAAGCAGGTTTAGAGTGGATATCAGAAATGCTGATATTGTGAGCTGGGATAAAAACCAGAAGAATTTTATCTGTAACAAAAAAGTTTATACTTTTCTTTCCGGAAGCAATACCGGTTTAAAATGGTTCCATAGAAAAATGGAAACAATTATGAAAGTTGCAGTGAGTAGTGTTGAAAAAATTGTGACTATAACAAAGAGTAAAACCGCGAAATAGTATACAAACCCTTTTTCATAGTCTTGAATCTCTCCGAAGTCCTAAAAAAATGCGACTTTTYGAACATTTGAATGATTTACCTATTTACCTCAATTATGCCAATATGAGGAGATCTAGTGGTAAAAACCATGATTTCAAAATTTAAAGAACAGTAGCCGAATAGTTTGTAGGTCAAACAGACTGGCAAAATATAACTGTTGTCAAGTCTTTTCCGAATATTCTAGTAGTTGAATGTCACGTAGGTGTGATAGCCCAGGTTTGCAGGTGATATCCAAAATATCAACCTATATTGAATAGGGGCTTTTTGAGTATTCTAATCTCAATAGTCAAAAAAGCAATTTAACAATCTGGGATATTGCTTGGAGATAAAAAATGATCTAGATTACTTTTATTTGAGTTAGGCAGAGATAATTTGAAAAAATTAAAATCAGGAACTGAAGAGGAAATTAAAAAGGTTGGTTCTGCCTTTTTAATTAAAGGTCCAGCAGCTGAAAAATGTCCACACAGTCAGTAGGAGATGAGTAATAAAATAAGAAATGCATCATCAATTTCCAAGCATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAATGGAAACAATTATGAAA</pcr_primer_p1>
		<pcr_primer_p2>AAACTATTCGGCTACTGTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAAAATGGAAACAATTATGAAAGTTGCAGTGAGTAGTGTTGAAAAAATTGTGACTATAACAAAGAGTAAAACCGCGAAATAGTATACAAACCCTTTTTCATAGTCTTGAATCTCTCCGAAGTCCTAAAAAAATGCGACTTTTTGAACATTTGAATGATTTACCTATTTACCTCAATTATGCCAATATGAGGAGATCTAGTGGTAAAAACCATGATTTCAAAATTTAAAGAACAGTAGCCGAATAGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAAAAATGGAAACAATTATGAAAGTTGCAGTGAGTAGTGTTGAAAAAATTGTGACTATAACAAAGAGTAAAACCGCGAAATAGTATACAAACCCTTTTTCATAGTCTTGAATCTCTCCGAAGTCCTAAAAAAATGCGACTTTTYGAACATTTGAATGATTTACCTATTTACCTCAATTATGCCAATATGAGGAGATCTAGTGGTAAAAACCATGATTTCAAAATTTAAAGAACAGTAGCCGAATAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19572</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>314475</contig_pos>
        <strand></strand>
        <context>GTGTGATAGC[C/A]CAGGTTTGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AAGTCTTTTCCGAATATTCTAGTAGTTGAATGTCACGTAGGTGTGATAGC</left_flank>
        <right_flank>CAGGTTTGCAGGTGATATCCAAAATATCAACCTATATTGAATAGGGGCTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAAATCAAGGACAGGGCAGCTGGGACATTGATAAGCAGGTTTAGAGTGGATATCAGAAATGCTGATATTGTGAGCTGGGATAAAAACCAGAAGAATTTTATCTGTAACAAAAAAGTTTATACTTTTCTTTCCGGAAGCAATACCGGTTTAAAATGGTTCCATAGAAAAATGGAAACAATTATGAAAGTTGCAGTGAGTAGTGTTGAAAAAATTGTGACTATAACAAAGAGTAAAACCGCGAAATAGTATACAAACCCTTTTTCATAGTCTTGAATCTCTCCGAAGTCCTAAAAAAATGCGACTTTTTGAACATTTGAATGATTTACCTATTTACCTCAATTATGCCAATATGAGGAGATCTAGTGGTAAAAACCATGATTTCAAAATTTAAAGAACAGTAGCCGAATAGTTTGTAGGTCAAACAGACTGGCAAAATATAACTGTTGTCAAGTCTTTTCCGAATATTCTAGTAGTTGAATGTCACGTAGGTGTGATAGCCCAGGTTTGCAGGTGATATCCAAAATATCAACCTATATTGAATAGGGGCTTTTTGAGTATTCTAATCTCAATAGTCAAAAAAGCAATTTAACAATCTGGGATATTGCTTGGAGATAAAAAATGATCTAGATTACTTTTATTTGAGTTAGGCAGAGATAATTTGAAAAAATTAAAATCAGGAACTGAAGAGGAAATTAAAAAGGTTGGTTCTGCCTTTTTAATTAAAGGTCCAGCAGCTGAAAAATGTCCACACAGTCAGTAGGAGATGAGTAATAAAATAAGAAATGCATCATCAATTTCCAAGCATTCAGCTCATGAAAGTTTATATCCAAAGCTGTATGCCAGTATATGAAAATCAATGATTATTCGAAAGATGAAAACCACAAGCAATATACTGAAGTGTCCATACTGGAGCTGTAAAATATGTATATGTGGCAGTTAAAACTCATGGACCATGTATGACATGTTGCATGACATAGCGTTCTACTTTAATATTACTTT</canonical>
            <polymorphic>GGAAATCAAGGACAGGGCAGCTGGGACATTGATAAGCAGGTTTAGAGTGGATATCAGAAATGCTGATATTGTGAGCTGGGATAAAAACCAGAAGAATTTTATCTGTAACAAAAAAGTTTATACTTTTCTTTCCGGAAGCAATACCGGTTTAAAATGGTTCCATAGAAAAATGGAAACAATTATGAAAGTTGCAGTGAGTAGTGTTGAAAAAATTGTGACTATAACAAAGAGTAAAACCGCGAAATAGTATACAAACCCTTTTTCATAGTCTTGAATCTCTCCGAAGTCCTAAAAAAATGCGACTTTTTGAACATTTGAATGATTTACCTATTTACCTCAATTATGCCAATATGAGGAGATCTAGTGGTAAAAACCATGATTTCAAAATTTAAAGAACAGTAGCCGAATAGTTTGTAGGTCAAACAGACTGGCAAAATATAACTGTTGTCAAGTCTTTTCCGAATATTCTAGTAGTTGAATGTCACGTAGGTGTGATAGCMCAGGTTTGCAGGTGATATCCAAAATATCAACCTATATTGAATAGGGGCTTTTTGAGTATTCTAATCTCAATAGTCAAAAAAGCAATTTAACAATCTGGGATATTGCTTGGAGATAAAAAATGATCTAGATTACTTTTATTTGAGTTAGGCAGAGATAATTTGAAAAAATTAAAATCAGGAACTGAAGAGGAAATTAAAAAGGTTGGTTCTGCCTTTTTAATTAAAGGTCCAGCAGCTGAAAAATGTCCACACAGTCAGTAGGAGATGAGTAATAAAATAAGAAATGCATCATCAATTTCCAAGCATTCAGCTCATGAAAGTTTATATCCAAAGCTGTATGCCAGTATATGAAAATCAATGATTATTCGAAAGATGAAAACCACAAGCAATATACTGAAGTGTCCATACTGGAGCTGTAAAATATGTATATGTGGCAGTTAAAACTCATGGACCATGTATGACATGTTGCATGACATAGCGTTCTACTTTAATATTACTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>327 188 96 87 80 75 55 49 23 20</canonical_bands>
                <polymorphic_bands>327 188 145 87 80 75 55 23 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAACAGACTGGCAAAATATAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCAAATTATCTCTGCCTAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAAACAGACTGGCAAAATATAACTGTTGTCAAGTCTTTTCCGAATATTCTAGTAGTTGAATGTCACGTAGGTGTGATAGCCCAGGTTTGCAGGTGATATCCAAAATATCAACCTATATTGAATAGGGGCTTTTTGAGTATTCTAATCTCAATAGTCAAAAAAGCAATTTAACAATCTGGGATATTGCTTGGAGATAAAAAATGATCTAGATTACTTTTATTTGAGTTAGGCAGAGATAATTTGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CAAACAGACTGGCAAAATATAACTGTTGTCAAGTCTTTTCCGAATATTCTAGTAGTTGAATGTCACGTAGGTGTGATAGCMCAGGTTTGCAGGTGATATCCAAAATATCAACCTATATTGAATAGGGGCTTTTTGAGTATTCTAATCTCAATAGTCAAAAAAGCAATTTAACAATCTGGGATATTGCTTGGAGATAAAAAATGATCTAGATTACTTTTATTTGAGTTAGGCAGAGATAATTTGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19573</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>314647</contig_pos>
        <strand></strand>
        <context>GAAAAAATTA[A/G]AATCAGGAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATCTAGATTACTTTTATTTGAGTTAGGCAGAGATAATTTGAAAAAATTA</left_flank>
        <right_flank>AATCAGGAACTGAAGAGGAAATTAAAAAGGTTGGTTCTGCCTTTTTAATT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAACAATTATGAAAGTTGCAGTGAGTAGTGTTGAAAAAATTGTGACTATAACAAAGAGTAAAACCGCGAAATAGTATACAAACCCTTTTTCATAGTCTTGAATCTCTCCGAAGTCCTAAAAAAATGCGACTTTTTGAACATTTGAATGATTTACCTATTTACCTCAATTATGCCAATATGAGGAGATCTAGTGGTAAAAACCATGATTTCAAAATTTAAAGAACAGTAGCCGAATAGTTTGTAGGTCAAACAGACTGGCAAAATATAACTGTTGTCAAGTCTTTTCCGAATATTCTAGTAGTTGAATGTCACGTAGGTGTGATAGCCCAGGTTTGCAGGTGATATCCAAAATATCAACCTATATTGAATAGGGGCTTTTTGAGTATTCTAATCTCAATAGTCAAAAAAGCAATTTAACAATCTGGGATATTGCTTGGAGATAAAAAATGATCTAGATTACTTTTATTTGAGTTAGGCAGAGATAATTTGAAAAAATTAAAATCAGGAACTGAAGAGGAAATTAAAAAGGTTGGTTCTGCCTTTTTAATTAAAGGTCCAGCAGCTGAAAAATGTCCACACAGTCAGTAGGAGATGAGTAATAAAATAAGAAATGCATCATCAATTTCCAAGCATTCAGCTCATGAAAGTTTATATCCAAAGCTGTATGCCAGTATATGAAAATCAATGATTATTCGAAAGATGAAAACCACAAGCAATATACTGAAGTGTCCATACTGGAGCTGTAAAATATGTATATGTGGCAGTTAAAACTCATGGACCATGTATGACATGTTGCATGACATAGCGTTCTACTTTAATATTACTTTTCAGAGTGCTCCAACCTCTCTACTATTCAAAGATATATTTTGGAACGTTATTTGGATTTCCAATCATAGCATTGCCAACTTTGATTTTGTCTTAATATTGAAAAATATACATTTATTGATTTCAAGCTGTCAACAAACATTTTTGAAATTTCATAATAGCCACAGTAATTAA</canonical>
            <polymorphic>GAAACAATTATGAAAGTTGCAGTGAGTAGTGTTGAAAAAATTGTGACTATAACAAAGAGTAAAACCGCGAAATAGTATACAAACCCTTTTTCATAGTCTTGAATCTCTCCGAAGTCCTAAAAAAATGCGACTTTTTGAACATTTGAATGATTTACCTATTTACCTCAATTATGCCAATATGAGGAGATCTAGTGGTAAAAACCATGATTTCAAAATTTAAAGAACAGTAGCCGAATAGTTTGTAGGTCAAACAGACTGGCAAAATATAACTGTTGTCAAGTCTTTTCCGAATATTCTAGTAGTTGAATGTCACGTAGGTGTGATAGCCCAGGTTTGCAGGTGATATCCAAAATATCAACCTATATTGAATAGGGGCTTTTTGAGTATTCTAATCTCAATAGTCAAAAAAGCAATTTAACAATCTGGGATATTGCTTGGAGATAAAAAATGATCTAGATTACTTTTATTTGAGTTAGGCAGAGATAATTTGAAAAAATTARAATCAGGAACTGAAGAGGAAATTAAAAAGGTTGGTTCTGCCTTTTTAATTAAAGGTCCAGCAGCTGAAAAATGTCCACACAGTCAGTAGGAGATGAGTAATAAAATAAGAAATGCATCATCAATTTCCAAGCATTCAGCTCATGAAAGTTTATATCCAAAGCTGTATGCCAGTATATGAAAATCAATGATTATTCGAAAGATGAAAACCACAAGCAATATACTGAAGTGTCCATACTGGAGCTGTAAAATATGTATATGTGGCAGTTAAAACTCATGGACCATGTATGACATGTTGCATGACATAGCGTTCTACTTTAATATTACTTTTCAGAGTGCTCCAACCTCTCTACTATTCAAAGATATATTTTGGAACGTTATTTGGATTTCCAATCATAGCATTGCCAACTTTGATTTTGTCTTAATATTGAAAAATATACATTTATTGATTTCAAGCTGTCAACAAACATTTTTGAAATTTCATAATAGCCACAGTAATTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>217 217 198 104 82 77 50 25 23 4 3</canonical_bands>
                <polymorphic_bands>217 217 198 107 104 77 50 23 4 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATATTGCTTGGAGATAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACAGCTTTGGATATAAACTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GGATATTGCTTGGAGATAAAAAATGATCTAGATTACTTTTATTTGAGTTAGGCAGAGATAATTTGAAAAAATTAAAATCAGGAACTGAAGAGGAAATTAAAAAGGTTGGTTCTGCCTTTTTAATTAAAGGTCCAGCAGCTGAAAAATGTCCACACAGTCAGTAGGAGATGAGTAATAAAATAAGAAATGCATCATCAATTTCCAAGCATTCAGCTCATGAAAGTTTATATCCAAAGCTGT</canonical_amplicon>
		<polymorphic_amplicon>GGATATTGCTTGGAGATAAAAAATGATCTAGATTACTTTTATTTGAGTTAGGCAGAGATAATTTGAAAAAATTARAATCAGGAACTGAAGAGGAAATTAAAAAGGTTGGTTCTGCCTTTTTAATTAAAGGTCCAGCAGCTGAAAAATGTCCACACAGTCAGTAGGAGATGAGTAATAAAATAAGAAATGCATCATCAATTTCCAAGCATTCAGCTCATGAAAGTTTATATCCAAAGCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19574</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>317201</contig_pos>
        <strand></strand>
        <context>tagaaggtat[C/T]ccgatgcttg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCAATTTTTTAAGGTTCAAAATACCGTAAACCCTCTAATAGAAGGTAT</left_flank>
        <right_flank>CCGATGCTTGTAATTCGAGCTCAATTATTTCAATTCCTGTAAGAGATATC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAATTTCTCCAAGCTCTTGGAAACAATCAAAATCATCCATCTATTCAAAAACCTTAATTACAGACCGGAAAGACAAAAATTCAGAGGTTAGAAAAAAATCAGCATGCAGGGTAAGTAGGCACAAAAAAGGGTTAGAAGTTGGAAAGGTGTTAGCAATGATTCTGAATTTTTTTCTTCCGAAGTAAATTGAAATTTTTGAAAATAAATAGATAGAAATCAATTGTTCAGCAAGAAAGAGAATTTCTGAAAAAATCCTAACAATAAGAGAAAGATTGGAACCATTCAGGATAAGGAGATGGATTCATGTCTTCAAAGTCTTCTGTTCTTGTATTTGTTGAGTCTTTTTTCAATCTGTCAGTTGTTGGAATGGCATGAGCATCCAGTTCAGCTACAGCTTTGTCACATTCCTTTTGATTTTCCACATGCAATGGAGAATTCTGGAATCCCATTCAATTTTTTAAGGTTCAAAATACCGTAAACCCTCTAATAGAAGGTATCCCGATGCTTGTAATTCGAGCTCAATTATTTCAATTCCTGTAAGAGATATCAAAAATGTGTCAACTGGCAAAATGTTTGTCATAATATCACCAAAAATTTATCAGTGGGCAAATTTTCGATATCTCTTATAGAAATTGAGTTAATTGAGCTCAAATGGTAGCCTTCTATTAGATTGTTTGAAGTGCATACTTACTGATAGTTTTAACAGTGCCTTTCCAATGGCATCGCATTTTTCTCCTTGCACACTGATTGATTTCTGAAAAAAAGTGAACCTCCTGAGATTCTCAAACGATAACGCTACCATAATCATTTTTAAGAAAATACGGTCATCGTATTCTTCAGAAAGACCTTCCAAGTAGTCATACGCATCAGCCAGCGTTTCTTGTCCGCTGTACACCAGCTTAGCAAAAAATCTAATCTCGGCCTACAAAGTTATTAATATAGAACATTCAGGAAAAGAATGAACTTACAAGAATGAACTTGACATCATCAACATCTGC</canonical>
            <polymorphic>TTGAATTTCTCCAAGCTCTTGGAAACAATCAAAATCATCCATCTATTCAAAAACCTTAATTACAGACCGGAAAGACAAAAATTCAGAGGTTAGAAAAAAATCAGCATGCAGGGTAAGTAGGCACAAAAAAGGGTTAGAAGTTGGAAAGGTGTTAGCAATGATTCTGAATTTTTTTCTTCCGAAGTAAATTGAAATTTTTGAAAATAAATAGATAGAAATCAATTGTTCAGCAAGAAAGAGAATTTCTGAAAAAATCCTAACAATAAGAGAAAGATTGGAACCATTCAGGATAAGGAGATGGATTCATGTCTTCAAAGTCTTCTGTTCTTGTATTTGTTGAGTCTTTTTTCAATCTGTCAGTTGTTGGAATGGCATGAGCATCCAGTTCAGCTACAGCTTTGTCACATTCCTTTTGATTTTCCACATGCAATGGAGAATTCTGGAATCCCATTCAATTTTTTAAGGTTCAAAATACCGTAAACCCTCTAATAGAAGGTATYCCGATGCTTGTAATTCGAGCTCAATTATTTCAATTCCTGTAAGAGATATCAAAAATGTGTCAACTGGCAAAATGTTTGTCATAATATCACCAAAAATTTATCAGTGGGCAAATTTTCGATATCTCTTATAGAAATTGAGTTAATTGAGCTCAAATGGTAGCCTTCTATTAGATTGTTTGAAGTGCATACTTACTGATAGTTTTAACAGTGCCTTTCCAATGGCATCGCATTTTTCTCCTTGCACACTGATTGATTTCTGAAAAAAAGTGAACCTCCTGAGATTCTCAAACGATAACGCTACCATAATCATTTTTAAGAAAATACGGTCATCGTATTCTTCAGAAAGACCTTCCAAGTAGTCATACGCATCAGCCAGCGTTTCTTGTCCGCTGTACACCAGCTTAGCAAAAAATCTAATCTCGGCCTACAAAGTTATTAATATAGAACATTCAGGAAAAGAATGAACTTACAAGAATGAACTTGACATCATCAACATCTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>286 275 176 154 60 49</canonical_bands>
                <polymorphic_bands>335 286 176 154 49</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCCTTTTGATTTTCCACAT</pcr_primer_p1>
		<pcr_primer_p2>CAGTAAGTATGCACTTCAAACAA</pcr_primer_p2>
		<pcr_amplicon_size>290</pcr_amplicon_size>
		<canonical_amplicon>ATTCCTTTTGATTTTCCACATGCAATGGAGAATTCTGGAATCCCATTCAATTTTTTAAGGTTCAAAATACCGTAAACCCTCTAATAGAAGGTATCCCGATGCTTGTAATTCGAGCTCAATTATTTCAATTCCTGTAAGAGATATCAAAAATGTGTCAACTGGCAAAATGTTTGTCATAATATCACCAAAAATTTATCAGTGGGCAAATTTTCGATATCTCTTATAGAAATTGAGTTAATTGAGCTCAAATGGTAGCCTTCTATTAGATTGTTTGAAGTGCATACTTACTG</canonical_amplicon>
		<polymorphic_amplicon>ATTCCTTTTGATTTTCCACATGCAATGGAGAATTCTGGAATCCCATTCAATTTTTTAAGGTTCAAAATACCGTAAACCCTCTAATAGAAGGTATYCCGATGCTTGTAATTCGAGCTCAATTATTTCAATTCCTGTAAGAGATATCAAAAATGTGTCAACTGGCAAAATGTTTGTCATAATATCACCAAAAATTTATCAGTGGGCAAATTTTCGATATCTCTTATAGAAATTGAGTTAATTGAGCTCAAATGGTAGCCTTCTATTAGATTGTTTGAAGTGCATACTTACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19575</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>317128</contig_pos>
        <strand>+</strand>
        <context>TTTTCCACAT[A/G]CAATGGAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCATCCAGTTCAGCTACAGCTTTGTCACATTCCTTTTGATTTTCCACAT</left_flank>
        <right_flank>CAATGGAGAATTCTGGAATCCCATTCAATTTTTTAAGGTTCAAAATACCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAGAGACGTTTTAATAAAGGTGATACATATGTGCAAACCCAACAGTAGTAAATTTGGAAGCATTTTAAAAATTTGAATTTCTCCAAGCTCTTGGAAACAATCAAAATCATCCATCTATTCAAAAACCTTAATTACAGACCGGAAAGACAAAAATTCAGAGGTTAGAAAAAAATCAGCATGCAGGGTAAGTAGGCACAAAAAAGGGTTAGAAGTTGGAAAGGTGTTAGCAATGATTCTGAATTTTTTTCTTCCGAAGTAAATTGAAATTTTTGAAAATAAATAGATAGAAATCAATTGTTCAGCAAGAAAGAGAATTTCTGAAAAAATCCTAACAATAAGAGAAAGATTGGAACCATTCAGGATAAGGAGATGGATTCATGTCTTCAAAGTCTTCTGTTCTTGTATTTGTTGAGTCTTTTTTCAATCTGTCAGTTGTTGGAATGGCATGAGCATCCAGTTCAGCTACAGCTTTGTCACATTCCTTTTGATTTTCCACATGCAATGGAGAATTCTGGAATCCCATTCAATTTTTTAAGGTTCAAAATACCGTAAACCCTCTAATAGAAGGTATCCCGATGCTTGTAATTCGAGCTCAATTATTTCAATTCCTGTAAGAGATATCAAAAATGTGTCAACTGGCAAAATGTTTGTCATAATATCACCAAAAATTTATCAGTGGGCAAATTTTCGATATCTCTTATAGAAATTGAGTTAATTGAGCTCAAATGGTAGCCTTCTATTAGATTGTTTGAAGTGCATACTTACTGATAGTTTTAACAGTGCCTTTCCAATGGCATCGCATTTTTCTCCTTGCACACTGATTGATTTCTGAAAAAAAGTGAACCTCCTGAGATTCTCAAACGATAACGCTACCATAATCATTTTTAAGAAAATACGGTCATCGTATTCTTCAGAAAGACCTTCCAAGTAGTCATACGCATCAGCCAGCGTTTCTTGTCCGCTGTACACCAGCTTAGCAAAAAATCTAATCTCGGCCTA</canonical>
            <polymorphic>TTAGAGACGTTTTAATAAAGGTGATACATATGTGCAAACCCAACAGTAGTAAATTTGGAAGCATTTTAAAAATTTGAATTTCTCCAAGCTCTTGGAAACAATCAAAATCATCCATCTATTCAAAAACCTTAATTACAGACCGGAAAGACAAAAATTCAGAGGTTAGAAAAAAATCAGCATGCAGGGTAAGTAGGCACAAAAAAGGGTTAGAAGTTGGAAAGGTGTTAGCAATGATTCTGAATTTTTTTCTTCCGAAGTAAATTGAAATTTTTGAAAATAAATAGATAGAAATCAATTGTTCAGCAAGAAAGAGAATTTCTGAAAAAATCCTAACAATAAGAGAAAGATTGGAACCATTCAGGATAAGGAGATGGATTCATGTCTTCAAAGTCTTCTGTTCTTGTATTTGTTGAGTCTTTTTTCAATCTGTCAGTTGTTGGAATGGCATGAGCATCCAGTTCAGCTACAGCTTTGTCACATTCCTTTTGATTTTCCACATRCAATGGAGAATTCTGGAATCCCATTCAATTTTTTAAGGTTCAAAATACCGTAAACCCTCTAATAGAAGGTATCCCGATGCTTGTAATTCGAGCTCAATTATTTCAATTCCTGTAAGAGATATCAAAAATGTGTCAACTGGCAAAATGTTTGTCATAATATCACCAAAAATTTATCAGTGGGCAAATTTTCGATATCTCTTATAGAAATTGAGTTAATTGAGCTCAAATGGTAGCCTTCTATTAGATTGTTTGAAGTGCATACTTACTGATAGTTTTAACAGTGCCTTTCCAATGGCATCGCATTTTTCTCCTTGCACACTGATTGATTTCTGAAAAAAAGTGAACCTCCTGAGATTCTCAAACGATAACGCTACCATAATCATTTTTAAGAAAATACGGTCATCGTATTCTTCAGAAAGACCTTCCAAGTAGTCATACGCATCAGCCAGCGTTTCTTGTCCGCTGTACACCAGCTTAGCAAAAAATCTAATCTCGGCCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>500 319 181</canonical_bands>
                <polymorphic_bands>819 181</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 200 178 68 51</canonical_bands>
                <polymorphic_bands>554 200 178 68</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>319 257 186 147 57 34</canonical_bands>
                <polymorphic_bands>576 186 147 57 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCATCCAGTTCAGCTACAG</pcr_primer_p1>
		<pcr_primer_p2>CAGTAAGTATGCACTTCAAACAA</pcr_primer_p2>
		<pcr_amplicon_size>319</pcr_amplicon_size>
		<canonical_amplicon>AGCATCCAGTTCAGCTACAGCTTTGTCACATTCCTTTTGATTTTCCACATGCAATGGAGAATTCTGGAATCCCATTCAATTTTTTAAGGTTCAAAATACCGTAAACCCTCTAATAGAAGGTATCCCGATGCTTGTAATTCGAGCTCAATTATTTCAATTCCTGTAAGAGATATCAAAAATGTGTCAACTGGCAAAATGTTTGTCATAATATCACCAAAAATTTATCAGTGGGCAAATTTTCGATATCTCTTATAGAAATTGAGTTAATTGAGCTCAAATGGTAGCCTTCTATTAGATTGTTTGAAGTGCATACTTACTG</canonical_amplicon>
		<polymorphic_amplicon>AGCATCCAGTTCAGCTACAGCTTTGTCACATTCCTTTTGATTTTCCACATRCAATGGAGAATTCTGGAATCCCATTCAATTTTTTAAGGTTCAAAATACCGTAAACCCTCTAATAGAAGGTATCCCGATGCTTGTAATTCGAGCTCAATTATTTCAATTCCTGTAAGAGATATCAAAAATGTGTCAACTGGCAAAATGTTTGTCATAATATCACCAAAAATTTATCAGTGGGCAAATTTTCGATATCTCTTATAGAAATTGAGTTAATTGAGCTCAAATGGTAGCCTTCTATTAGATTGTTTGAAGTGCATACTTACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19576</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>316980</contig_pos>
        <strand>+</strand>
        <context>GAAAGATTGG[A/G]ACCATTCAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCAAGAAAGAGAATTTCTGAAAAAATCCTAACAATAAGAGAAAGATTGG</left_flank>
        <right_flank>ACCATTCAGGATAAGGAGATGGATTCATGTCTTCAAAGTCTTCTGTTCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAGCAAAACAATTTTCTTGGTGTAACTCCAACAGATCAAAAACTCTCAAGTCATGAAATTTTATCATCAAATGTTTATAACAAAATGCAAAAATCAATGATGACCCAAAAGATAAAAATCACAAGCAATATACTCGAGAGATCAATTAGAGACGTTTTAATAAAGGTGATACATATGTGCAAACCCAACAGTAGTAAATTTGGAAGCATTTTAAAAATTTGAATTTCTCCAAGCTCTTGGAAACAATCAAAATCATCCATCTATTCAAAAACCTTAATTACAGACCGGAAAGACAAAAATTCAGAGGTTAGAAAAAAATCAGCATGCAGGGTAAGTAGGCACAAAAAAGGGTTAGAAGTTGGAAAGGTGTTAGCAATGATTCTGAATTTTTTTCTTCCGAAGTAAATTGAAATTTTTGAAAATAAATAGATAGAAATCAATTGTTCAGCAAGAAAGAGAATTTCTGAAAAAATCCTAACAATAAGAGAAAGATTGGAACCATTCAGGATAAGGAGATGGATTCATGTCTTCAAAGTCTTCTGTTCTTGTATTTGTTGAGTCTTTTTTCAATCTGTCAGTTGTTGGAATGGCATGAGCATCCAGTTCAGCTACAGCTTTGTCACATTCCTTTTGATTTTCCACATGCAATGGAGAATTCTGGAATCCCATTCAATTTTTTAAGGTTCAAAATACCGTAAACCCTCTAATAGAAGGTATCCCGATGCTTGTAATTCGAGCTCAATTATTTCAATTCCTGTAAGAGATATCAAAAATGTGTCAACTGGCAAAATGTTTGTCATAATATCACCAAAAATTTATCAGTGGGCAAATTTTCGATATCTCTTATAGAAATTGAGTTAATTGAGCTCAAATGGTAGCCTTCTATTAGATTGTTTGAAGTGCATACTTACTGATAGTTTTAACAGTGCCTTTCCAATGGCATCGCATTTTTCTCCTTGCACACTGATTGATTTCTGAAAAAAAGTGAACCTCCTGA</canonical>
            <polymorphic>TTAAAGCAAAACAATTTTCTTGGTGTAACTCCAACAGATCAAAAACTCTCAAGTCATGAAATTTTATCATCAAATGTTTATAACAAAATGCAAAAATCAATGATGACCCAAAAGATAAAAATCACAAGCAATATACTCGAGAGATCAATTAGAGACGTTTTAATAAAGGTGATACATATGTGCAAACCCAACAGTAGTAAATTTGGAAGCATTTTAAAAATTTGAATTTCTCCAAGCTCTTGGAAACAATCAAAATCATCCATCTATTCAAAAACCTTAATTACAGACCGGAAAGACAAAAATTCAGAGGTTAGAAAAAAATCAGCATGCAGGGTAAGTAGGCACAAAAAAGGGTTAGAAGTTGGAAAGGTGTTAGCAATGATTCTGAATTTTTTTCTTCCGAAGTAAATTGAAATTTTTGAAAATAAATAGATAGAAATCAATTGTTCAGCAAGAAAGAGAATTTCTGAAAAAATCCTAACAATAAGAGAAAGATTGGRACCATTCAGGATAAGGAGATGGATTCATGTCTTCAAAGTCTTCTGTTCTTGTATTTGTTGAGTCTTTTTTCAATCTGTCAGTTGTTGGAATGGCATGAGCATCCAGTTCAGCTACAGCTTTGTCACATTCCTTTTGATTTTCCACATGCAATGGAGAATTCTGGAATCCCATTCAATTTTTTAAGGTTCAAAATACCGTAAACCCTCTAATAGAAGGTATCCCGATGCTTGTAATTCGAGCTCAATTATTTCAATTCCTGTAAGAGATATCAAAAATGTGTCAACTGGCAAAATGTTTGTCATAATATCACCAAAAATTTATCAGTGGGCAAATTTTCGATATCTCTTATAGAAATTGAGTTAATTGAGCTCAAATGGTAGCCTTCTATTAGATTGTTTGAAGTGCATACTTACTGATAGTTTTAACAGTGCCTTTCCAATGGCATCGCATTTTTCTCCTTGCACACTGATTGATTTCTGAAAAAAAGTGAACCTCCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGAAGTAAATTGAAATTTTTG</pcr_primer_p1>
		<pcr_primer_p2>GTGGAAAATCAAAAGGAATGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CCGAAGTAAATTGAAATTTTTGAAAATAAATAGATAGAAATCAATTGTTCAGCAAGAAAGAGAATTTCTGAAAAAATCCTAACAATAAGAGAAAGATTGGAACCATTCAGGATAAGGAGATGGATTCATGTCTTCAAAGTCTTCTGTTCTTGTATTTGTTGAGTCTTTTTTCAATCTGTCAGTTGTTGGAATGGCATGAGCATCCAGTTCAGCTACAGCTTTGTCACATTCCTTTTGATTTTCCAC</canonical_amplicon>
		<polymorphic_amplicon>CCGAAGTAAATTGAAATTTTTGAAAATAAATAGATAGAAATCAATTGTTCAGCAAGAAAGAGAATTTCTGAAAAAATCCTAACAATAAGAGAAAGATTGGRACCATTCAGGATAAGGAGATGGATTCATGTCTTCAAAGTCTTCTGTTCTTGTATTTGTTGAGTCTTTTTTCAATCTGTCAGTTGTTGGAATGGCATGAGCATCCAGTTCAGCTACAGCTTTGTCACATTCCTTTTGATTTTCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19577</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>316965</contig_pos>
        <strand>+</strand>
        <context>ATCCTAACAA[G/T]AAGAGAAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGAAATCAATTGTTCAGCAAGAAAGAGAATTTCTGAAAAAATCCTAACAA</left_flank>
        <right_flank>AAGAGAAAGATTGGAACCATTCAGGATAAGGAGATGGATTCATGTCTTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGCATGAACTCCTATTAAAGCAAAACAATTTTCTTGGTGTAACTCCAACAGATCAAAAACTCTCAAGTCATGAAATTTTATCATCAAATGTTTATAACAAAATGCAAAAATCAATGATGACCCAAAAGATAAAAATCACAAGCAATATACTCGAGAGATCAATTAGAGACGTTTTAATAAAGGTGATACATATGTGCAAACCCAACAGTAGTAAATTTGGAAGCATTTTAAAAATTTGAATTTCTCCAAGCTCTTGGAAACAATCAAAATCATCCATCTATTCAAAAACCTTAATTACAGACCGGAAAGACAAAAATTCAGAGGTTAGAAAAAAATCAGCATGCAGGGTAAGTAGGCACAAAAAAGGGTTAGAAGTTGGAAAGGTGTTAGCAATGATTCTGAATTTTTTTCTTCCGAAGTAAATTGAAATTTTTGAAAATAAATAGATAGAAATCAATTGTTCAGCAAGAAAGAGAATTTCTGAAAAAATCCTAACAATAAGAGAAAGATTGGAACCATTCAGGATAAGGAGATGGATTCATGTCTTCAAAGTCTTCTGTTCTTGTATTTGTTGAGTCTTTTTTCAATCTGTCAGTTGTTGGAATGGCATGAGCATCCAGTTCAGCTACAGCTTTGTCACATTCCTTTTGATTTTCCACATGCAATGGAGAATTCTGGAATCCCATTCAATTTTTTAAGGTTCAAAATACCGTAAACCCTCTAATAGAAGGTATCCCGATGCTTGTAATTCGAGCTCAATTATTTCAATTCCTGTAAGAGATATCAAAAATGTGTCAACTGGCAAAATGTTTGTCATAATATCACCAAAAATTTATCAGTGGGCAAATTTTCGATATCTCTTATAGAAATTGAGTTAATTGAGCTCAAATGGTAGCCTTCTATTAGATTGTTTGAAGTGCATACTTACTGATAGTTTTAACAGTGCCTTTCCAATGGCATCGCATTTTTCTCCTTGCACACTGATTGATTTCTGAAAAA</canonical>
            <polymorphic>GTGCATGAACTCCTATTAAAGCAAAACAATTTTCTTGGTGTAACTCCAACAGATCAAAAACTCTCAAGTCATGAAATTTTATCATCAAATGTTTATAACAAAATGCAAAAATCAATGATGACCCAAAAGATAAAAATCACAAGCAATATACTCGAGAGATCAATTAGAGACGTTTTAATAAAGGTGATACATATGTGCAAACCCAACAGTAGTAAATTTGGAAGCATTTTAAAAATTTGAATTTCTCCAAGCTCTTGGAAACAATCAAAATCATCCATCTATTCAAAAACCTTAATTACAGACCGGAAAGACAAAAATTCAGAGGTTAGAAAAAAATCAGCATGCAGGGTAAGTAGGCACAAAAAAGGGTTAGAAGTTGGAAAGGTGTTAGCAATGATTCTGAATTTTTTTCTTCCGAAGTAAATTGAAATTTTTGAAAATAAATAGATAGAAATCAATTGTTCAGCAAGAAAGAGAATTTCTGAAAAAATCCTAACAAKAAGAGAAAGATTGGAACCATTCAGGATAAGGAGATGGATTCATGTCTTCAAAGTCTTCTGTTCTTGTATTTGTTGAGTCTTTTTTCAATCTGTCAGTTGTTGGAATGGCATGAGCATCCAGTTCAGCTACAGCTTTGTCACATTCCTTTTGATTTTCCACATGCAATGGAGAATTCTGGAATCCCATTCAATTTTTTAAGGTTCAAAATACCGTAAACCCTCTAATAGAAGGTATCCCGATGCTTGTAATTCGAGCTCAATTATTTCAATTCCTGTAAGAGATATCAAAAATGTGTCAACTGGCAAAATGTTTGTCATAATATCACCAAAAATTTATCAGTGGGCAAATTTTCGATATCTCTTATAGAAATTGAGTTAATTGAGCTCAAATGGTAGCCTTCTATTAGATTGTTTGAAGTGCATACTTACTGATAGTTTTAACAGTGCCTTTCCAATGGCATCGCATTTTTCTCCTTGCACACTGATTGATTTCTGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAATTCAGAGGTTAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAGAAGACTTTGAAGACATGAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATTCAGAGGTTAGAAAAAAATCAGCATGCAGGGTAAGTAGGCACAAAAAAGGGTTAGAAGTTGGAAAGGTGTTAGCAATGATTCTGAATTTTTTTCTTCCGAAGTAAATTGAAATTTTTGAAAATAAATAGATAGAAATCAATTGTTCAGCAAGAAAGAGAATTTCTGAAAAAATCCTAACAATAAGAGAAAGATTGGAACCATTCAGGATAAGGAGATGGATTCATGTCTTCAAAGTCTTCTG</canonical_amplicon>
		<polymorphic_amplicon>CAAAAATTCAGAGGTTAGAAAAAAATCAGCATGCAGGGTAAGTAGGCACAAAAAAGGGTTAGAAGTTGGAAAGGTGTTAGCAATGATTCTGAATTTTTTTCTTCCGAAGTAAATTGAAATTTTTGAAAATAAATAGATAGAAATCAATTGTTCAGCAAGAAAGAGAATTTCTGAAAAAATCCTAACAAKAAGAGAAAGATTGGAACCATTCAGGATAAGGAGATGGATTCATGTCTTCAAAGTCTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19578</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>316925</contig_pos>
        <strand>+</strand>
        <context>AGAAATCAAT[G/T]GTTCAGCAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCTTCCGAAGTAAATTGAAATTTTTGAAAATAAATAGATAGAAATCAAT</left_flank>
        <right_flank>GTTCAGCAAGAAAGAGAATTTCTGAAAAAATCCTAACAATAAGAGAAAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGTTTTGATATCTTTTCAAAAAAAACCGAGATGGTTGAGTGCATGAACTCCTATTAAAGCAAAACAATTTTCTTGGTGTAACTCCAACAGATCAAAAACTCTCAAGTCATGAAATTTTATCATCAAATGTTTATAACAAAATGCAAAAATCAATGATGACCCAAAAGATAAAAATCACAAGCAATATACTCGAGAGATCAATTAGAGACGTTTTAATAAAGGTGATACATATGTGCAAACCCAACAGTAGTAAATTTGGAAGCATTTTAAAAATTTGAATTTCTCCAAGCTCTTGGAAACAATCAAAATCATCCATCTATTCAAAAACCTTAATTACAGACCGGAAAGACAAAAATTCAGAGGTTAGAAAAAAATCAGCATGCAGGGTAAGTAGGCACAAAAAAGGGTTAGAAGTTGGAAAGGTGTTAGCAATGATTCTGAATTTTTTTCTTCCGAAGTAAATTGAAATTTTTGAAAATAAATAGATAGAAATCAATTGTTCAGCAAGAAAGAGAATTTCTGAAAAAATCCTAACAATAAGAGAAAGATTGGAACCATTCAGGATAAGGAGATGGATTCATGTCTTCAAAGTCTTCTGTTCTTGTATTTGTTGAGTCTTTTTTCAATCTGTCAGTTGTTGGAATGGCATGAGCATCCAGTTCAGCTACAGCTTTGTCACATTCCTTTTGATTTTCCACATGCAATGGAGAATTCTGGAATCCCATTCAATTTTTTAAGGTTCAAAATACCGTAAACCCTCTAATAGAAGGTATCCCGATGCTTGTAATTCGAGCTCAATTATTTCAATTCCTGTAAGAGATATCAAAAATGTGTCAACTGGCAAAATGTTTGTCATAATATCACCAAAAATTTATCAGTGGGCAAATTTTCGATATCTCTTATAGAAATTGAGTTAATTGAGCTCAAATGGTAGCCTTCTATTAGATTGTTTGAAGTGCATACTTACTGATAGTTTTAACAGTGCCTTTCCAATGGCA</canonical>
            <polymorphic>AATGTTTTGATATCTTTTCAAAAAAAACCGAGATGGTTGAGTGCATGAACTCCTATTAAAGCAAAACAATTTTCTTGGTGTAACTCCAACAGATCAAAAACTCTCAAGTCATGAAATTTTATCATCAAATGTTTATAACAAAATGCAAAAATCAATGATGACCCAAAAGATAAAAATCACAAGCAATATACTCGAGAGATCAATTAGAGACGTTTTAATAAAGGTGATACATATGTGCAAACCCAACAGTAGTAAATTTGGAAGCATTTTAAAAATTTGAATTTCTCCAAGCTCTTGGAAACAATCAAAATCATCCATCTATTCAAAAACCTTAATTACAGACCGGAAAGACAAAAATTCAGAGGTTAGAAAAAAATCAGCATGCAGGGTAAGTAGGCACAAAAAAGGGTTAGAAGTTGGAAAGGTGTTAGCAATGATTCTGAATTTTTTTCTTCCGAAGTAAATTGAAATTTTTGAAAATAAATAGATAGAAATCAATKGTTCAGCAAGAAAGAGAATTTCTGAAAAAATCCTAACAATAAGAGAAAGATTGGAACCATTCAGGATAAGGAGATGGATTCATGTCTTCAAAGTCTTCTGTTCTTGTATTTGTTGAGTCTTTTTTCAATCTGTCAGTTGTTGGAATGGCATGAGCATCCAGTTCAGCTACAGCTTTGTCACATTCCTTTTGATTTTCCACATGCAATGGAGAATTCTGGAATCCCATTCAATTTTTTAAGGTTCAAAATACCGTAAACCCTCTAATAGAAGGTATCCCGATGCTTGTAATTCGAGCTCAATTATTTCAATTCCTGTAAGAGATATCAAAAATGTGTCAACTGGCAAAATGTTTGTCATAATATCACCAAAAATTTATCAGTGGGCAAATTTTCGATATCTCTTATAGAAATTGAGTTAATTGAGCTCAAATGGTAGCCTTCTATTAGATTGTTTGAAGTGCATACTTACTGATAGTTTTAACAGTGCCTTTCCAATGGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>195 87 87 83 67 63 58 54 53 47 28 22 22 20 20 19 18 16 11 9 9 6 6</canonical_bands>
                <polymorphic_bands>195 87 87 83 67 63 58 54 53 48 47 22 22 20 19 18 16 11 9 9 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAATTCAGAGGTTAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAGAAGACTTTGAAGACATGAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATTCAGAGGTTAGAAAAAAATCAGCATGCAGGGTAAGTAGGCACAAAAAAGGGTTAGAAGTTGGAAAGGTGTTAGCAATGATTCTGAATTTTTTTCTTCCGAAGTAAATTGAAATTTTTGAAAATAAATAGATAGAAATCAATTGTTCAGCAAGAAAGAGAATTTCTGAAAAAATCCTAACAATAAGAGAAAGATTGGAACCATTCAGGATAAGGAGATGGATTCATGTCTTCAAAGTCTTCTG</canonical_amplicon>
		<polymorphic_amplicon>CAAAAATTCAGAGGTTAGAAAAAAATCAGCATGCAGGGTAAGTAGGCACAAAAAAGGGTTAGAAGTTGGAAAGGTGTTAGCAATGATTCTGAATTTTTTTCTTCCGAAGTAAATTGAAATTTTTGAAAATAAATAGATAGAAATCAATKGTTCAGCAAGAAAGAGAATTTCTGAAAAAATCCTAACAATAAGAGAAAGATTGGAACCATTCAGGATAAGGAGATGGATTCATGTCTTCAAAGTCTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19579</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>316857</contig_pos>
        <strand>+</strand>
        <context>AAGGTGTTAG[C/T]AATGATTCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGCAGGGTAAGTAGGCACAAAAAAGGGTTAGAAGTTGGAAAGGTGTTAG</left_flank>
        <right_flank>AATGATTCTGAATTTTTTTCTTCCGAAGTAAATTGAAATTTTTGAAAATA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGTTCACACACTTTCCATGTAATAAGAAATTGTCCATAAAATTTCTGAATTGCTCTTCAAGTTGAAAATGTTTTGATATCTTTTCAAAAAAAACCGAGATGGTTGAGTGCATGAACTCCTATTAAAGCAAAACAATTTTCTTGGTGTAACTCCAACAGATCAAAAACTCTCAAGTCATGAAATTTTATCATCAAATGTTTATAACAAAATGCAAAAATCAATGATGACCCAAAAGATAAAAATCACAAGCAATATACTCGAGAGATCAATTAGAGACGTTTTAATAAAGGTGATACATATGTGCAAACCCAACAGTAGTAAATTTGGAAGCATTTTAAAAATTTGAATTTCTCCAAGCTCTTGGAAACAATCAAAATCATCCATCTATTCAAAAACCTTAATTACAGACCGGAAAGACAAAAATTCAGAGGTTAGAAAAAAATCAGCATGCAGGGTAAGTAGGCACAAAAAAGGGTTAGAAGTTGGAAAGGTGTTAGCAATGATTCTGAATTTTTTTCTTCCGAAGTAAATTGAAATTTTTGAAAATAAATAGATAGAAATCAATTGTTCAGCAAGAAAGAGAATTTCTGAAAAAATCCTAACAATAAGAGAAAGATTGGAACCATTCAGGATAAGGAGATGGATTCATGTCTTCAAAGTCTTCTGTTCTTGTATTTGTTGAGTCTTTTTTCAATCTGTCAGTTGTTGGAATGGCATGAGCATCCAGTTCAGCTACAGCTTTGTCACATTCCTTTTGATTTTCCACATGCAATGGAGAATTCTGGAATCCCATTCAATTTTTTAAGGTTCAAAATACCGTAAACCCTCTAATAGAAGGTATCCCGATGCTTGTAATTCGAGCTCAATTATTTCAATTCCTGTAAGAGATATCAAAAATGTGTCAACTGGCAAAATGTTTGTCATAATATCACCAAAAATTTATCAGTGGGCAAATTTTCGATATCTCTTATAGAAATTGAGTTAATTGAGCTCAAATG</canonical>
            <polymorphic>TCAGTTCACACACTTTCCATGTAATAAGAAATTGTCCATAAAATTTCTGAATTGCTCTTCAAGTTGAAAATGTTTTGATATCTTTTCAAAAAAAACCGAGATGGTTGAGTGCATGAACTCCTATTAAAGCAAAACAATTTTCTTGGTGTAACTCCAACAGATCAAAAACTCTCAAGTCATGAAATTTTATCATCAAATGTTTATAACAAAATGCAAAAATCAATGATGACCCAAAAGATAAAAATCACAAGCAATATACTCGAGAGATCAATTAGAGACGTTTTAATAAAGGTGATACATATGTGCAAACCCAACAGTAGTAAATTTGGAAGCATTTTAAAAATTTGAATTTCTCCAAGCTCTTGGAAACAATCAAAATCATCCATCTATTCAAAAACCTTAATTACAGACCGGAAAGACAAAAATTCAGAGGTTAGAAAAAAATCAGCATGCAGGGTAAGTAGGCACAAAAAAGGGTTAGAAGTTGGAAAGGTGTTAGYAATGATTCTGAATTTTTTTCTTCCGAAGTAAATTGAAATTTTTGAAAATAAATAGATAGAAATCAATTGTTCAGCAAGAAAGAGAATTTCTGAAAAAATCCTAACAATAAGAGAAAGATTGGAACCATTCAGGATAAGGAGATGGATTCATGTCTTCAAAGTCTTCTGTTCTTGTATTTGTTGAGTCTTTTTTCAATCTGTCAGTTGTTGGAATGGCATGAGCATCCAGTTCAGCTACAGCTTTGTCACATTCCTTTTGATTTTCCACATGCAATGGAGAATTCTGGAATCCCATTCAATTTTTTAAGGTTCAAAATACCGTAAACCCTCTAATAGAAGGTATCCCGATGCTTGTAATTCGAGCTCAATTATTTCAATTCCTGTAAGAGATATCAAAAATGTGTCAACTGGCAAAATGTTTGTCATAATATCACCAAAAATTTATCAGTGGGCAAATTTTCGATATCTCTTATAGAAATTGAGTTAATTGAGCTCAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAATTCAGAGGTTAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAGAAGACTTTGAAGACATGAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATTCAGAGGTTAGAAAAAAATCAGCATGCAGGGTAAGTAGGCACAAAAAAGGGTTAGAAGTTGGAAAGGTGTTAGCAATGATTCTGAATTTTTTTCTTCCGAAGTAAATTGAAATTTTTGAAAATAAATAGATAGAAATCAATTGTTCAGCAAGAAAGAGAATTTCTGAAAAAATCCTAACAATAAGAGAAAGATTGGAACCATTCAGGATAAGGAGATGGATTCATGTCTTCAAAGTCTTCTG</canonical_amplicon>
		<polymorphic_amplicon>CAAAAATTCAGAGGTTAGAAAAAAATCAGCATGCAGGGTAAGTAGGCACAAAAAAGGGTTAGAAGTTGGAAAGGTGTTAGYAATGATTCTGAATTTTTTTCTTCCGAAGTAAATTGAAATTTTTGAAAATAAATAGATAGAAATCAATTGTTCAGCAAGAAAGAGAATTTCTGAAAAAATCCTAACAATAAGAGAAAGATTGGAACCATTCAGGATAAGGAGATGGATTCATGTCTTCAAAGTCTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19580</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>316721</contig_pos>
        <strand>+</strand>
        <context>TCCAAGCTCT[G/T]GGAAACAATC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACAGTAGTAAATTTGGAAGCATTTTAAAAATTTGAATTTCTCCAAGCTCT</left_flank>
        <right_flank>GGAAACAATCAAAATCATCCATCTATTCAAAAACCTTAATTACAGACCGG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAACAAGTTCAGGGAATCAAGAGCACAGTTATTTATGTTTTTATCAACTCTGAATTTTGTATTTACATAGTTCCAAACATCCGGTTCCTTATCTAGAAAATATACTGAACAAATACACGTGAATGTTTTTGAAAATCAGTTCACACACTTTCCATGTAATAAGAAATTGTCCATAAAATTTCTGAATTGCTCTTCAAGTTGAAAATGTTTTGATATCTTTTCAAAAAAAACCGAGATGGTTGAGTGCATGAACTCCTATTAAAGCAAAACAATTTTCTTGGTGTAACTCCAACAGATCAAAAACTCTCAAGTCATGAAATTTTATCATCAAATGTTTATAACAAAATGCAAAAATCAATGATGACCCAAAAGATAAAAATCACAAGCAATATACTCGAGAGATCAATTAGAGACGTTTTAATAAAGGTGATACATATGTGCAAACCCAACAGTAGTAAATTTGGAAGCATTTTAAAAATTTGAATTTCTCCAAGCTCTTGGAAACAATCAAAATCATCCATCTATTCAAAAACCTTAATTACAGACCGGAAAGACAAAAATTCAGAGGTTAGAAAAAAATCAGCATGCAGGGTAAGTAGGCACAAAAAAGGGTTAGAAGTTGGAAAGGTGTTAGCAATGATTCTGAATTTTTTTCTTCCGAAGTAAATTGAAATTTTTGAAAATAAATAGATAGAAATCAATTGTTCAGCAAGAAAGAGAATTTCTGAAAAAATCCTAACAATAAGAGAAAGATTGGAACCATTCAGGATAAGGAGATGGATTCATGTCTTCAAAGTCTTCTGTTCTTGTATTTGTTGAGTCTTTTTTCAATCTGTCAGTTGTTGGAATGGCATGAGCATCCAGTTCAGCTACAGCTTTGTCACATTCCTTTTGATTTTCCACATGCAATGGAGAATTCTGGAATCCCATTCAATTTTTTAAGGTTCAAAATACCGTAAACCCTCTAATAGAAGGTATCCCGATGCTTGTAATTCGAGC</canonical>
            <polymorphic>TCAACAAGTTCAGGGAATCAAGAGCACAGTTATTTATGTTTTTATCAACTCTGAATTTTGTATTTACATAGTTCCAAACATCCGGTTCCTTATCTAGAAAATATACTGAACAAATACACGTGAATGTTTTTGAAAATCAGTTCACACACTTTCCATGTAATAAGAAATTGTCCATAAAATTTCTGAATTGCTCTTCAAGTTGAAAATGTTTTGATATCTTTTCAAAAAAAACCGAGATGGTTGAGTGCATGAACTCCTATTAAAGCAAAACAATTTTCTTGGTGTAACTCCAACAGATCAAAAACTCTCAAGTCATGAAATTTTATCATCAAATGTTTATAACAAAATGCAAAAATCAATGATGACCCAAAAGATAAAAATCACAAGCAATATACTCGAGAGATCAATTAGAGACGTTTTAATAAAGGTGATACATATGTGCAAACCCAACAGTAGTAAATTTGGAAGCATTTTAAAAATTTGAATTTCTCCAAGCTCTKGGAAACAATCAAAATCATCCATCTATTCAAAAACCTTAATTACAGACCGGAAAGACAAAAATTCAGAGGTTAGAAAAAAATCAGCATGCAGGGTAAGTAGGCACAAAAAAGGGTTAGAAGTTGGAAAGGTGTTAGCAATGATTCTGAATTTTTTTCTTCCGAAGTAAATTGAAATTTTTGAAAATAAATAGATAGAAATCAATTGTTCAGCAAGAAAGAGAATTTCTGAAAAAATCCTAACAATAAGAGAAAGATTGGAACCATTCAGGATAAGGAGATGGATTCATGTCTTCAAAGTCTTCTGTTCTTGTATTTGTTGAGTCTTTTTTCAATCTGTCAGTTGTTGGAATGGCATGAGCATCCAGTTCAGCTACAGCTTTGTCACATTCCTTTTGATTTTCCACATGCAATGGAGAATTCTGGAATCCCATTCAATTTTTTAAGGTTCAAAATACCGTAAACCCTCTAATAGAAGGTATCCCGATGCTTGTAATTCGAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>BstXI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCAATATACTCGAGAGATCAA</pcr_primer_p1>
		<pcr_primer_p2>ACACCTTTCCAACTTCTAACC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGCAATATACTCGAGAGATCAATTAGAGACGTTTTAATAAAGGTGATACATATGTGCAAACCCAACAGTAGTAAATTTGGAAGCATTTTAAAAATTTGAATTTCTCCAAGCTCTTGGAAACAATCAAAATCATCCATCTATTCAAAAACCTTAATTACAGACCGGAAAGACAAAAATTCAGAGGTTAGAAAAAAATCAGCATGCAGGGTAAGTAGGCACAAAAAAGGGTTAGAAGTTGGAAAGGTGT</canonical_amplicon>
		<polymorphic_amplicon>AAGCAATATACTCGAGAGATCAATTAGAGACGTTTTAATAAAGGTGATACATATGTGCAAACCCAACAGTAGTAAATTTGGAAGCATTTTAAAAATTTGAATTTCTCCAAGCTCTKGGAAACAATCAAAATCATCCATCTATTCAAAAACCTTAATTACAGACCGGAAAGACAAAAATTCAGAGGTTAGAAAAAAATCAGCATGCAGGGTAAGTAGGCACAAAAAAGGGTTAGAAGTTGGAAAGGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19581</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>336968</contig_pos>
        <strand>+</strand>
        <context>TGGATGCTCG[C/T]TTAATCTATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATATCTTTTTTGAAATATGGCACTGGTTATGGGCACTTTTTGGATGCTCG</left_flank>
        <right_flank>TTAATCTATTGCTAGTCTACGTTGCTGTATTCAAAACACCAAAAGCGATC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCCTAAGAGACTCCACTATAGTTTGTTCTAGATGCTGCCATTATTCATAAATTCATTGTTTTCAGAGTAATCTTAAACAAGCTTACCTTAGAGATTAGGCTCCCTAAAAAGCACAATGACGACAATGGATTAGAACATTTTTTTGGGAAAAGGAATGTTTTGTTGCTTAGCTACAGTAATCCCATCTACACTCCATTCTCATATAAACTCCAGGAACAACATTCGCCAGACGATTCGGACGTCATTACCGCCCGGACGTCATTACCGCAATTTACTTCTGTTTTCCTTATCTCTCTAGTCTGGCACCAATGAACAGCTGATTTTTCCAAGTAGAATACAATTCAGCTTCACTATATAATTTGAATACTCCACTCGTTTAATGCCTTTTAATCACCTTATTTTTCAGCCCTCATCTGAAAAAATCTAGTAAAAAACAGCAAGGTATGAATATCTTTTTTGAAATATGGCACTGGTTATGGGCACTTTTTGGATGCTCGTTTAATCTATTGCTAGTCTACGTTGCTGTATTCAAAACACCAAAAGCGATCCGATCCTATGCAACATTGATTATCAATTTTGCTATCACCGATTTCCTGGAGTGTTTTTTAGACTGGTTTACGCAGTTGAGGTAAATTAAAGTTTCAAGTTCCACTAATTCATTTTTCCAGACTTATTCCAACGCCAGGAGACATCTCCTTAACTTATATTGCCAATGGTCCATGTCAATACATCAACCCATTTAGTTGTAAACTTGGAATCAGTCTTCTCCTCCATTGCCTCCCCCATGCAGTATGGTCTCTCCTTCTCTCATTTGGATATCGATACTACATCCTTCACCATTCAGCACTATCCCGAATGACCCTATTTAAGATTCTATTGCTCATTTATATTCCTTCATTGTTTCAAGGGGCAACTTATTGGAGCACACTGGCAACGAAAGAACAGATCCTTCCACTTGCCAAAAAATGGTTCCCCGATTATCAGTTAGAAACTGGTGT</canonical>
            <polymorphic>TGTCCTAAGAGACTCCACTATAGTTTGTTCTAGATGCTGCCATTATTCATAAATTCATTGTTTTCAGAGTAATCTTAAACAAGCTTACCTTAGAGATTAGGCTCCCTAAAAAGCACAATGACGACAATGGATTAGAACATTTTTTTGGGAAAAGGAATGTTTTGTTGCTTAGCTACAGTAATCCCATCTACACTCCATTCTCATATAAACTCCAGGAACAACATTCGCCAGACGATTCGGACGTCATTACCGCCCGGACGTCATTACCGCAATTTACTTCTGTTTTCCTTATCTCTCTAGTCTGGCACCAATGAACAGCTGATTTTTCCAAGTAGAATACAATTCAGCTTCACTATATAATTTGAATACTCCACTCGTTTAATGCCTTTTAATCACCTTATTTTTCAGCCCTCATCTGAAAAAATCTAGTAAAAAACAGCAAGGTATGAATATCTTTTTTGAAATATGGCACTGGTTATGGGCACTTTTTGGATGCTCGYTTAATCTATTGCTAGTCTACGTTGCTGTATTCAAAACACCAAAAGCGATCCGATCCTATGCAACATTGATTATCAATTTTGCTATCACCGATTTCCTGGAGTGTTTTTTAGACTGGTTTACGCAGTTGAGGTAAATTAAAGTTTCAAGTTCCACTAATTCATTTTTCCAGACTTATTCCAACGCCAGGAGACATCTCCTTAACTTATATTGCCAATGGTCCATGTCAATACATCAACCCATTTAGTTGTAAACTTGGAATCAGTCTTCTCCTCCATTGCCTCCCCCATGCAGTATGGTCTCTCCTTCTCTCATTTGGATATCGATACTACATCCTTCACCATTCAGCACTATCCCGAATGACCCTATTTAAGATTCTATTGCTCATTTATATTCCTTCATTGTTTCAAGGGGCAACTTATTGGAGCACACTGGCAACGAAAGAACAGATCCTTCCACTTGCCAAAAAATGGTTCCCCGATTATCAGTTAGAAACTGGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAATGCCTTTTAATCACCTTA</pcr_primer_p1>
		<pcr_primer_p2>AACTGCGTAAACCAGTCTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTAATGCCTTTTAATCACCTTATTTTTCAGCCCTCATCTGAAAAAATCTAGTAAAAAACAGCAAGGTATGAATATCTTTTTTGAAATATGGCACTGGTTATGGGCACTTTTTGGATGCTCGTTTAATCTATTGCTAGTCTACGTTGCTGTATTCAAAACACCAAAAGCGATCCGATCCTATGCAACATTGATTATCAATTTTGCTATCACCGATTTCCTGGAGTGTTTTTTAGACTGGTTTACGCAGTT</canonical_amplicon>
		<polymorphic_amplicon>TTTAATGCCTTTTAATCACCTTATTTTTCAGCCCTCATCTGAAAAAATCTAGTAAAAAACAGCAAGGTATGAATATCTTTTTTGAAATATGGCACTGGTTATGGGCACTTTTTGGATGCTCGYTTAATCTATTGCTAGTCTACGTTGCTGTATTCAAAACACCAAAAGCGATCCGATCCTATGCAACATTGATTATCAATTTTGCTATCACCGATTTCCTGGAGTGTTTTTTAGACTGGTTTACGCAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19582</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>337024</contig_pos>
        <strand>+</strand>
        <context>CGATCCGATC[A/C]TATGCAACAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTATTGCTAGTCTACGTTGCTGTATTCAAAACACCAAAAGCGATCCGATC</left_flank>
        <right_flank>TATGCAACATTGATTATCAATTTTGCTATCACCGATTTCCTGGAGTGTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGTTTTCAGAGTAATCTTAAACAAGCTTACCTTAGAGATTAGGCTCCCTAAAAAGCACAATGACGACAATGGATTAGAACATTTTTTTGGGAAAAGGAATGTTTTGTTGCTTAGCTACAGTAATCCCATCTACACTCCATTCTCATATAAACTCCAGGAACAACATTCGCCAGACGATTCGGACGTCATTACCGCCCGGACGTCATTACCGCAATTTACTTCTGTTTTCCTTATCTCTCTAGTCTGGCACCAATGAACAGCTGATTTTTCCAAGTAGAATACAATTCAGCTTCACTATATAATTTGAATACTCCACTCGTTTAATGCCTTTTAATCACCTTATTTTTCAGCCCTCATCTGAAAAAATCTAGTAAAAAACAGCAAGGTATGAATATCTTTTTTGAAATATGGCACTGGTTATGGGCACTTTTTGGATGCTCGTTTAATCTATTGCTAGTCTACGTTGCTGTATTCAAAACACCAAAAGCGATCCGATCCTATGCAACATTGATTATCAATTTTGCTATCACCGATTTCCTGGAGTGTTTTTTAGACTGGTTTACGCAGTTGAGGTAAATTAAAGTTTCAAGTTCCACTAATTCATTTTTCCAGACTTATTCCAACGCCAGGAGACATCTCCTTAACTTATATTGCCAATGGTCCATGTCAATACATCAACCCATTTAGTTGTAAACTTGGAATCAGTCTTCTCCTCCATTGCCTCCCCCATGCAGTATGGTCTCTCCTTCTCTCATTTGGATATCGATACTACATCCTTCACCATTCAGCACTATCCCGAATGACCCTATTTAAGATTCTATTGCTCATTTATATTCCTTCATTGTTTCAAGGGGCAACTTATTGGAGCACACTGGCAACGAAAGAACAGATCCTTCCACTTGCCAAAAAATGGTTCCCCGATTATCAGTTAGAAACTGGTGTTATCACTGGAATCGTTGACACCACCAACTGGGTTGCTGCCTATGGCATCAGTCACA</canonical>
            <polymorphic>ATTGTTTTCAGAGTAATCTTAAACAAGCTTACCTTAGAGATTAGGCTCCCTAAAAAGCACAATGACGACAATGGATTAGAACATTTTTTTGGGAAAAGGAATGTTTTGTTGCTTAGCTACAGTAATCCCATCTACACTCCATTCTCATATAAACTCCAGGAACAACATTCGCCAGACGATTCGGACGTCATTACCGCCCGGACGTCATTACCGCAATTTACTTCTGTTTTCCTTATCTCTCTAGTCTGGCACCAATGAACAGCTGATTTTTCCAAGTAGAATACAATTCAGCTTCACTATATAATTTGAATACTCCACTCGTTTAATGCCTTTTAATCACCTTATTTTTCAGCCCTCATCTGAAAAAATCTAGTAAAAAACAGCAAGGTATGAATATCTTTTTTGAAATATGGCACTGGTTATGGGCACTTTTTGGATGCTCGTTTAATCTATTGCTAGTCTACGTTGCTGTATTCAAAACACCAAAAGCGATCCGATCMTATGCAACATTGATTATCAATTTTGCTATCACCGATTTCCTGGAGTGTTTTTTAGACTGGTTTACGCAGTTGAGGTAAATTAAAGTTTCAAGTTCCACTAATTCATTTTTCCAGACTTATTCCAACGCCAGGAGACATCTCCTTAACTTATATTGCCAATGGTCCATGTCAATACATCAACCCATTTAGTTGTAAACTTGGAATCAGTCTTCTCCTCCATTGCCTCCCCCATGCAGTATGGTCTCTCCTTCTCTCATTTGGATATCGATACTACATCCTTCACCATTCAGCACTATCCCGAATGACCCTATTTAAGATTCTATTGCTCATTTATATTCCTTCATTGTTTCAAGGGGCAACTTATTGGAGCACACTGGCAACGAAAGAACAGATCCTTCCACTTGCCAAAAAATGGTTCCCCGATTATCAGTTAGAAACTGGTGTTATCACTGGAATCGTTGACACCACCAACTGGGTTGCTGCCTATGGCATCAGTCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAATGCCTTTTAATCACCTTA</pcr_primer_p1>
		<pcr_primer_p2>AACTGCGTAAACCAGTCTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTAATGCCTTTTAATCACCTTATTTTTCAGCCCTCATCTGAAAAAATCTAGTAAAAAACAGCAAGGTATGAATATCTTTTTTGAAATATGGCACTGGTTATGGGCACTTTTTGGATGCTCGTTTAATCTATTGCTAGTCTACGTTGCTGTATTCAAAACACCAAAAGCGATCCGATCCTATGCAACATTGATTATCAATTTTGCTATCACCGATTTCCTGGAGTGTTTTTTAGACTGGTTTACGCAGTT</canonical_amplicon>
		<polymorphic_amplicon>TTTAATGCCTTTTAATCACCTTATTTTTCAGCCCTCATCTGAAAAAATCTAGTAAAAAACAGCAAGGTATGAATATCTTTTTTGAAATATGGCACTGGTTATGGGCACTTTTTGGATGCTCGTTTAATCTATTGCTAGTCTACGTTGCTGTATTCAAAACACCAAAAGCGATCCGATCMTATGCAACATTGATTATCAATTTTGCTATCACCGATTTCCTGGAGTGTTTTTTAGACTGGTTTACGCAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19583</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>337110</contig_pos>
        <strand>+</strand>
        <context>TAAATTAAAG[G/T]TTCAAGTTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCCTGGAGTGTTTTTTAGACTGGTTTACGCAGTTGAGGTAAATTAAAG</left_flank>
        <right_flank>TTCAAGTTCCACTAATTCATTTTTCCAGACTTATTCCAACGCCAGGAGAC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGGGAAAAGGAATGTTTTGTTGCTTAGCTACAGTAATCCCATCTACACTCCATTCTCATATAAACTCCAGGAACAACATTCGCCAGACGATTCGGACGTCATTACCGCCCGGACGTCATTACCGCAATTTACTTCTGTTTTCCTTATCTCTCTAGTCTGGCACCAATGAACAGCTGATTTTTCCAAGTAGAATACAATTCAGCTTCACTATATAATTTGAATACTCCACTCGTTTAATGCCTTTTAATCACCTTATTTTTCAGCCCTCATCTGAAAAAATCTAGTAAAAAACAGCAAGGTATGAATATCTTTTTTGAAATATGGCACTGGTTATGGGCACTTTTTGGATGCTCGTTTAATCTATTGCTAGTCTACGTTGCTGTATTCAAAACACCAAAAGCGATCCGATCCTATGCAACATTGATTATCAATTTTGCTATCACCGATTTCCTGGAGTGTTTTTTAGACTGGTTTACGCAGTTGAGGTAAATTAAAGTTTCAAGTTCCACTAATTCATTTTTCCAGACTTATTCCAACGCCAGGAGACATCTCCTTAACTTATATTGCCAATGGTCCATGTCAATACATCAACCCATTTAGTTGTAAACTTGGAATCAGTCTTCTCCTCCATTGCCTCCCCCATGCAGTATGGTCTCTCCTTCTCTCATTTGGATATCGATACTACATCCTTCACCATTCAGCACTATCCCGAATGACCCTATTTAAGATTCTATTGCTCATTTATATTCCTTCATTGTTTCAAGGGGCAACTTATTGGAGCACACTGGCAACGAAAGAACAGATCCTTCCACTTGCCAAAAAATGGTTCCCCGATTATCAGTTAGAAACTGGTGTTATCACTGGAATCGTTGACACCACCAACTGGGTTGCTGCCTATGGCATCAGTCACATCTGCCTCCCAATTTTTCCTGTCTACACATCTATATTCATATTCCGCCGGAAAATTATTAAACACTTGGAAGAGAATACCCAAATG</canonical>
            <polymorphic>TTTTGGGAAAAGGAATGTTTTGTTGCTTAGCTACAGTAATCCCATCTACACTCCATTCTCATATAAACTCCAGGAACAACATTCGCCAGACGATTCGGACGTCATTACCGCCCGGACGTCATTACCGCAATTTACTTCTGTTTTCCTTATCTCTCTAGTCTGGCACCAATGAACAGCTGATTTTTCCAAGTAGAATACAATTCAGCTTCACTATATAATTTGAATACTCCACTCGTTTAATGCCTTTTAATCACCTTATTTTTCAGCCCTCATCTGAAAAAATCTAGTAAAAAACAGCAAGGTATGAATATCTTTTTTGAAATATGGCACTGGTTATGGGCACTTTTTGGATGCTCGTTTAATCTATTGCTAGTCTACGTTGCTGTATTCAAAACACCAAAAGCGATCCGATCCTATGCAACATTGATTATCAATTTTGCTATCACCGATTTCCTGGAGTGTTTTTTAGACTGGTTTACGCAGTTGAGGTAAATTAAAGKTTCAAGTTCCACTAATTCATTTTTCCAGACTTATTCCAACGCCAGGAGACATCTCCTTAACTTATATTGCCAATGGTCCATGTCAATACATCAACCCATTTAGTTGTAAACTTGGAATCAGTCTTCTCCTCCATTGCCTCCCCCATGCAGTATGGTCTCTCCTTCTCTCATTTGGATATCGATACTACATCCTTCACCATTCAGCACTATCCCGAATGACCCTATTTAAGATTCTATTGCTCATTTATATTCCTTCATTGTTTCAAGGGGCAACTTATTGGAGCACACTGGCAACGAAAGAACAGATCCTTCCACTTGCCAAAAAATGGTTCCCCGATTATCAGTTAGAAACTGGTGTTATCACTGGAATCGTTGACACCACCAACTGGGTTGCTGCCTATGGCATCAGTCACATCTGCCTCCCAATTTTTCCTGTCTACACATCTATATTCATATTCCGCCGGAAAATTATTAAACACTTGGAAGAGAATACCCAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTGCTAGTCTACGTTGCTGT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTACAACTAAATGGGTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATTGCTAGTCTACGTTGCTGTATTCAAAACACCAAAAGCGATCCGATCCTATGCAACATTGATTATCAATTTTGCTATCACCGATTTCCTGGAGTGTTTTTTAGACTGGTTTACGCAGTTGAGGTAAATTAAAGTTTCAAGTTCCACTAATTCATTTTTCCAGACTTATTCCAACGCCAGGAGACATCTCCTTAACTTATATTGCCAATGGTCCATGTCAATACATCAACCCATTTAGTTGTAAACTT</canonical_amplicon>
		<polymorphic_amplicon>CTATTGCTAGTCTACGTTGCTGTATTCAAAACACCAAAAGCGATCCGATCCTATGCAACATTGATTATCAATTTTGCTATCACCGATTTCCTGGAGTGTTTTTTAGACTGGTTTACGCAGTTGAGGTAAATTAAAGKTTCAAGTTCCACTAATTCATTTTTCCAGACTTATTCCAACGCCAGGAGACATCTCCTTAACTTATATTGCCAATGGTCCATGTCAATACATCAACCCATTTAGTTGTAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19584</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>337155</contig_pos>
        <strand>+</strand>
        <context>TCCAACGCCA[A/G]GAGACATCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAAGTTTCAAGTTCCACTAATTCATTTTTCCAGACTTATTCCAACGCCA</left_flank>
        <right_flank>GAGACATCTCCTTAACTTATATTGCCAATGGTCCATGTCAATACATCAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTACACTCCATTCTCATATAAACTCCAGGAACAACATTCGCCAGACGATTCGGACGTCATTACCGCCCGGACGTCATTACCGCAATTTACTTCTGTTTTCCTTATCTCTCTAGTCTGGCACCAATGAACAGCTGATTTTTCCAAGTAGAATACAATTCAGCTTCACTATATAATTTGAATACTCCACTCGTTTAATGCCTTTTAATCACCTTATTTTTCAGCCCTCATCTGAAAAAATCTAGTAAAAAACAGCAAGGTATGAATATCTTTTTTGAAATATGGCACTGGTTATGGGCACTTTTTGGATGCTCGTTTAATCTATTGCTAGTCTACGTTGCTGTATTCAAAACACCAAAAGCGATCCGATCCTATGCAACATTGATTATCAATTTTGCTATCACCGATTTCCTGGAGTGTTTTTTAGACTGGTTTACGCAGTTGAGGTAAATTAAAGTTTCAAGTTCCACTAATTCATTTTTCCAGACTTATTCCAACGCCAGGAGACATCTCCTTAACTTATATTGCCAATGGTCCATGTCAATACATCAACCCATTTAGTTGTAAACTTGGAATCAGTCTTCTCCTCCATTGCCTCCCCCATGCAGTATGGTCTCTCCTTCTCTCATTTGGATATCGATACTACATCCTTCACCATTCAGCACTATCCCGAATGACCCTATTTAAGATTCTATTGCTCATTTATATTCCTTCATTGTTTCAAGGGGCAACTTATTGGAGCACACTGGCAACGAAAGAACAGATCCTTCCACTTGCCAAAAAATGGTTCCCCGATTATCAGTTAGAAACTGGTGTTATCACTGGAATCGTTGACACCACCAACTGGGTTGCTGCCTATGGCATCAGTCACATCTGCCTCCCAATTTTTCCTGTCTACACATCTATATTCATATTCCGCCGGAAAATTATTAAACACTTGGAAGAGAATACCCAAATGATGTCTTCAGACACCAGAGCAGCGCATGCTCAGCTTTTGAAAGCT</canonical>
            <polymorphic>CTACACTCCATTCTCATATAAACTCCAGGAACAACATTCGCCAGACGATTCGGACGTCATTACCGCCCGGACGTCATTACCGCAATTTACTTCTGTTTTCCTTATCTCTCTAGTCTGGCACCAATGAACAGCTGATTTTTCCAAGTAGAATACAATTCAGCTTCACTATATAATTTGAATACTCCACTCGTTTAATGCCTTTTAATCACCTTATTTTTCAGCCCTCATCTGAAAAAATCTAGTAAAAAACAGCAAGGTATGAATATCTTTTTTGAAATATGGCACTGGTTATGGGCACTTTTTGGATGCTCGTTTAATCTATTGCTAGTCTACGTTGCTGTATTCAAAACACCAAAAGCGATCCGATCCTATGCAACATTGATTATCAATTTTGCTATCACCGATTTCCTGGAGTGTTTTTTAGACTGGTTTACGCAGTTGAGGTAAATTAAAGTTTCAAGTTCCACTAATTCATTTTTCCAGACTTATTCCAACGCCARGAGACATCTCCTTAACTTATATTGCCAATGGTCCATGTCAATACATCAACCCATTTAGTTGTAAACTTGGAATCAGTCTTCTCCTCCATTGCCTCCCCCATGCAGTATGGTCTCTCCTTCTCTCATTTGGATATCGATACTACATCCTTCACCATTCAGCACTATCCCGAATGACCCTATTTAAGATTCTATTGCTCATTTATATTCCTTCATTGTTTCAAGGGGCAACTTATTGGAGCACACTGGCAACGAAAGAACAGATCCTTCCACTTGCCAAAAAATGGTTCCCCGATTATCAGTTAGAAACTGGTGTTATCACTGGAATCGTTGACACCACCAACTGGGTTGCTGCCTATGGCATCAGTCACATCTGCCTCCCAATTTTTCCTGTCTACACATCTATATTCATATTCCGCCGGAAAATTATTAAACACTTGGAAGAGAATACCCAAATGATGTCTTCAGACACCAGAGCAGCGCATGCTCAGCTTTTGAAAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>502 342 89 41 26</canonical_bands>
                <polymorphic_bands>591 342 41 26</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>497 283 160 60</canonical_bands>
                <polymorphic_bands>780 160 60</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>502 383 89 26</canonical_bands>
                <polymorphic_bands>591 383 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTGCTAGTCTACGTTGCTGT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTACAACTAAATGGGTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATTGCTAGTCTACGTTGCTGTATTCAAAACACCAAAAGCGATCCGATCCTATGCAACATTGATTATCAATTTTGCTATCACCGATTTCCTGGAGTGTTTTTTAGACTGGTTTACGCAGTTGAGGTAAATTAAAGTTTCAAGTTCCACTAATTCATTTTTCCAGACTTATTCCAACGCCAGGAGACATCTCCTTAACTTATATTGCCAATGGTCCATGTCAATACATCAACCCATTTAGTTGTAAACTT</canonical_amplicon>
		<polymorphic_amplicon>CTATTGCTAGTCTACGTTGCTGTATTCAAAACACCAAAAGCGATCCGATCCTATGCAACATTGATTATCAATTTTGCTATCACCGATTTCCTGGAGTGTTTTTTAGACTGGTTTACGCAGTTGAGGTAAATTAAAGTTTCAAGTTCCACTAATTCATTTTTCCAGACTTATTCCAACGCCARGAGACATCTCCTTAACTTATATTGCCAATGGTCCATGTCAATACATCAACCCATTTAGTTGTAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19585</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>339942</contig_pos>
        <strand>+</strand>
        <context>AGTTGTTTTC[A/T]TTCTTTTATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGAATCCGGAAGTGAAACCATTGAGGGAATGAAGCAATGAGTTGTTTTC</left_flank>
        <right_flank>TTCTTTTATATATCAATTTTTTAATGACTTTTTCATTTACCGATGAAGGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGTTGCTACAATATTTCTGAAATTTTTGGATGTTCTCAGAATTCTTGAAAGTTCAATTACACCGAACCAAAACAGCAAATGATTGAACGCATACTCTAACTTCAAAAATCTCAGAAAAACTCCGGCTCCTCCATTACCTGCAAATCCAGTACCCATAGAATATACCACAACAGTTGTATCTAGTTGTAAATAATCAAAAAGACCTCGGGAATAATATGCGATGTATGGAAAAAATACGACGGGAACCAGACCGACACACATAGTCGCACTATAAAAAGTTACCCAGAACTGATGAGCCAAAAGAAGACATTTTGAGATGATCAAATGTTTTGGAGTCAATTTGCAAATGCAATATATTGCAAATAATGAGAGTGGAATTTCGATTGCCACAATCACATGTAGGAAAACTGACGAAGCTGTGTGATTTACTTCGGAAGAATTTTGGCAAGAATCCGGAAGTGAAACCATTGAGGGAATGAAGCAATGAGTTGTTTTCATTCTTTTATATATCAATTTTTTAATGACTTTTTCATTTACCGATGAAGGCTGAAAAACTACAAGGCACATGGGAAAAACAAAGCAAGGTGATGAGATCAATAACAATTCACAATTAGTATTTAACAGACTTCGTGCTGCATTCCACTTTAACCGTACTATTCCTCGAGCCAGATTTGCCTGAAAAATAAGATGATGATGTGTTGGTTCGATGTAATTTAACTTTCAAGAATTCTGAGAACATCTAAAAAATTCAAAAAAAATTGTAGCAACTAAAGAACTGGGTCTGATAACTAGAAAGGATGACGGGGAAAACTGGTTTTGTATAAGTCTAGACGTAATTGAACCTCTCTGAAACTACAAAATTTTGCTATGAGTAAAAATGAAATAGGACCAGAGAGAATTTGAATAACATGGAAGTTGATTCAGAGGATTTCAAAAGGGATGTTCGGAATGGCATTTTCCGAAATATTCGGGAGTTTGGAAAACTCCAAGCTTCAAA</canonical>
            <polymorphic>TTTGGTTGCTACAATATTTCTGAAATTTTTGGATGTTCTCAGAATTCTTGAAAGTTCAATTACACCGAACCAAAACAGCAAATGATTGAACGCATACTCTAACTTCAAAAATCTCAGAAAAACTCCGGCTCCTCCATTACCTGCAAATCCAGTACCCATAGAATATACCACAACAGTTGTATCTAGTTGTAAATAATCAAAAAGACCTCGGGAATAATATGCGATGTATGGAAAAAATACGACGGGAACCAGACCGACACACATAGTCGCACTATAAAAAGTTACCCAGAACTGATGAGCCAAAAGAAGACATTTTGAGATGATCAAATGTTTTGGAGTCAATTTGCAAATGCAATATATTGCAAATAATGAGAGTGGAATTTCGATTGCCACAATCACATGTAGGAAAACTGACGAAGCTGTGTGATTTACTTCGGAAGAATTTTGGCAAGAATCCGGAAGTGAAACCATTGAGGGAATGAAGCAATGAGTTGTTTTCWTTCTTTTATATATCAATTTTTTAATGACTTTTTCATTTACCGATGAAGGCTGAAAAACTACAAGGCACATGGGAAAAACAAAGCAAGGTGATGAGATCAATAACAATTCACAATTAGTATTTAACAGACTTCGTGCTGCATTCCACTTTAACCGTACTATTCCTCGAGCCAGATTTGCCTGAAAAATAAGATGATGATGTGTTGGTTCGATGTAATTTAACTTTCAAGAATTCTGAGAACATCTAAAAAATTCAAAAAAAATTGTAGCAACTAAAGAACTGGGTCTGATAACTAGAAAGGATGACGGGGAAAACTGGTTTTGTATAAGTCTAGACGTAATTGAACCTCTCTGAAACTACAAAATTTTGCTATGAGTAAAAATGAAATAGGACCAGAGAGAATTTGAATAACATGGAAGTTGATTCAGAGGATTTCAAAAGGGATGTTCGGAATGGCATTTTCCGAAATATTCGGGAGTTTGGAAAACTCCAAGCTTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTGCAAATAATGAGAGTGGA</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTATTGATCTCATCACCTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATATTGCAAATAATGAGAGTGGAATTTCGATTGCCACAATCACATGTAGGAAAACTGACGAAGCTGTGTGATTTACTTCGGAAGAATTTTGGCAAGAATCCGGAAGTGAAACCATTGAGGGAATGAAGCAATGAGTTGTTTTCATTCTTTTATATATCAATTTTTTAATGACTTTTTCATTTACCGATGAAGGCTGAAAAACTACAAGGCACATGGGAAAAACAAAGCAAGGTGATGAGATCAATAACAAT</canonical_amplicon>
		<polymorphic_amplicon>ATATTGCAAATAATGAGAGTGGAATTTCGATTGCCACAATCACATGTAGGAAAACTGACGAAGCTGTGTGATTTACTTCGGAAGAATTTTGGCAAGAATCCGGAAGTGAAACCATTGAGGGAATGAAGCAATGAGTTGTTTTCWTTCTTTTATATATCAATTTTTTAATGACTTTTTCATTTACCGATGAAGGCTGAAAAACTACAAGGCACATGGGAAAAACAAAGCAAGGTGATGAGATCAATAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19586</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>339918</contig_pos>
        <strand>+</strand>
        <context>AACCATTGAG[A/G]GAATGAAGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTTACTTCGGAAGAATTTTGGCAAGAATCCGGAAGTGAAACCATTGAG</left_flank>
        <right_flank>GAATGAAGCAATGAGTTGTTTTCATTCTTTTATATATCAATTTTTTAATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTCTAGTTATCAGACCCAGTTCTTTGGTTGCTACAATATTTCTGAAATTTTTGGATGTTCTCAGAATTCTTGAAAGTTCAATTACACCGAACCAAAACAGCAAATGATTGAACGCATACTCTAACTTCAAAAATCTCAGAAAAACTCCGGCTCCTCCATTACCTGCAAATCCAGTACCCATAGAATATACCACAACAGTTGTATCTAGTTGTAAATAATCAAAAAGACCTCGGGAATAATATGCGATGTATGGAAAAAATACGACGGGAACCAGACCGACACACATAGTCGCACTATAAAAAGTTACCCAGAACTGATGAGCCAAAAGAAGACATTTTGAGATGATCAAATGTTTTGGAGTCAATTTGCAAATGCAATATATTGCAAATAATGAGAGTGGAATTTCGATTGCCACAATCACATGTAGGAAAACTGACGAAGCTGTGTGATTTACTTCGGAAGAATTTTGGCAAGAATCCGGAAGTGAAACCATTGAGGGAATGAAGCAATGAGTTGTTTTCATTCTTTTATATATCAATTTTTTAATGACTTTTTCATTTACCGATGAAGGCTGAAAAACTACAAGGCACATGGGAAAAACAAAGCAAGGTGATGAGATCAATAACAATTCACAATTAGTATTTAACAGACTTCGTGCTGCATTCCACTTTAACCGTACTATTCCTCGAGCCAGATTTGCCTGAAAAATAAGATGATGATGTGTTGGTTCGATGTAATTTAACTTTCAAGAATTCTGAGAACATCTAAAAAATTCAAAAAAAATTGTAGCAACTAAAGAACTGGGTCTGATAACTAGAAAGGATGACGGGGAAAACTGGTTTTGTATAAGTCTAGACGTAATTGAACCTCTCTGAAACTACAAAATTTTGCTATGAGTAAAAATGAAATAGGACCAGAGAGAATTTGAATAACATGGAAGTTGATTCAGAGGATTTCAAAAGGGATGTTCGGAATGGCATTTTCCGAAATATTCGGGA</canonical>
            <polymorphic>CTTTCTAGTTATCAGACCCAGTTCTTTGGTTGCTACAATATTTCTGAAATTTTTGGATGTTCTCAGAATTCTTGAAAGTTCAATTACACCGAACCAAAACAGCAAATGATTGAACGCATACTCTAACTTCAAAAATCTCAGAAAAACTCCGGCTCCTCCATTACCTGCAAATCCAGTACCCATAGAATATACCACAACAGTTGTATCTAGTTGTAAATAATCAAAAAGACCTCGGGAATAATATGCGATGTATGGAAAAAATACGACGGGAACCAGACCGACACACATAGTCGCACTATAAAAAGTTACCCAGAACTGATGAGCCAAAAGAAGACATTTTGAGATGATCAAATGTTTTGGAGTCAATTTGCAAATGCAATATATTGCAAATAATGAGAGTGGAATTTCGATTGCCACAATCACATGTAGGAAAACTGACGAAGCTGTGTGATTTACTTCGGAAGAATTTTGGCAAGAATCCGGAAGTGAAACCATTGAGRGAATGAAGCAATGAGTTGTTTTCATTCTTTTATATATCAATTTTTTAATGACTTTTTCATTTACCGATGAAGGCTGAAAAACTACAAGGCACATGGGAAAAACAAAGCAAGGTGATGAGATCAATAACAATTCACAATTAGTATTTAACAGACTTCGTGCTGCATTCCACTTTAACCGTACTATTCCTCGAGCCAGATTTGCCTGAAAAATAAGATGATGATGTGTTGGTTCGATGTAATTTAACTTTCAAGAATTCTGAGAACATCTAAAAAATTCAAAAAAAATTGTAGCAACTAAAGAACTGGGTCTGATAACTAGAAAGGATGACGGGGAAAACTGGTTTTGTATAAGTCTAGACGTAATTGAACCTCTCTGAAACTACAAAATTTTGCTATGAGTAAAAATGAAATAGGACCAGAGAGAATTTGAATAACATGGAAGTTGATTCAGAGGATTTCAAAAGGGATGTTCGGAATGGCATTTTCCGAAATATTCGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTGCAAATAATGAGAGTGGA</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTATTGATCTCATCACCTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATATTGCAAATAATGAGAGTGGAATTTCGATTGCCACAATCACATGTAGGAAAACTGACGAAGCTGTGTGATTTACTTCGGAAGAATTTTGGCAAGAATCCGGAAGTGAAACCATTGAGGGAATGAAGCAATGAGTTGTTTTCATTCTTTTATATATCAATTTTTTAATGACTTTTTCATTTACCGATGAAGGCTGAAAAACTACAAGGCACATGGGAAAAACAAAGCAAGGTGATGAGATCAATAACAAT</canonical_amplicon>
		<polymorphic_amplicon>ATATTGCAAATAATGAGAGTGGAATTTCGATTGCCACAATCACATGTAGGAAAACTGACGAAGCTGTGTGATTTACTTCGGAAGAATTTTGGCAAGAATCCGGAAGTGAAACCATTGAGRGAATGAAGCAATGAGTTGTTTTCATTCTTTTATATATCAATTTTTTAATGACTTTTTCATTTACCGATGAAGGCTGAAAAACTACAAGGCACATGGGAAAAACAAAGCAAGGTGATGAGATCAATAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19587</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>339835</contig_pos>
        <strand>+</strand>
        <context>TCGATTGCCA[C/T]AATCACATGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGCAAATGCAATATATTGCAAATAATGAGAGTGGAATTTCGATTGCCA</left_flank>
        <right_flank>AATCACATGTAGGAAAACTGACGAAGCTGTGTGATTTACTTCGGAAGAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGCCATAGAAAACATTTATACATAGTTTCACAGAGGGTAAAATTCCGTTTGGACTTACACAGAACCCGTCTTACCCGTCACCCTTTCTAGTTATCAGACCCAGTTCTTTGGTTGCTACAATATTTCTGAAATTTTTGGATGTTCTCAGAATTCTTGAAAGTTCAATTACACCGAACCAAAACAGCAAATGATTGAACGCATACTCTAACTTCAAAAATCTCAGAAAAACTCCGGCTCCTCCATTACCTGCAAATCCAGTACCCATAGAATATACCACAACAGTTGTATCTAGTTGTAAATAATCAAAAAGACCTCGGGAATAATATGCGATGTATGGAAAAAATACGACGGGAACCAGACCGACACACATAGTCGCACTATAAAAAGTTACCCAGAACTGATGAGCCAAAAGAAGACATTTTGAGATGATCAAATGTTTTGGAGTCAATTTGCAAATGCAATATATTGCAAATAATGAGAGTGGAATTTCGATTGCCACAATCACATGTAGGAAAACTGACGAAGCTGTGTGATTTACTTCGGAAGAATTTTGGCAAGAATCCGGAAGTGAAACCATTGAGGGAATGAAGCAATGAGTTGTTTTCATTCTTTTATATATCAATTTTTTAATGACTTTTTCATTTACCGATGAAGGCTGAAAAACTACAAGGCACATGGGAAAAACAAAGCAAGGTGATGAGATCAATAACAATTCACAATTAGTATTTAACAGACTTCGTGCTGCATTCCACTTTAACCGTACTATTCCTCGAGCCAGATTTGCCTGAAAAATAAGATGATGATGTGTTGGTTCGATGTAATTTAACTTTCAAGAATTCTGAGAACATCTAAAAAATTCAAAAAAAATTGTAGCAACTAAAGAACTGGGTCTGATAACTAGAAAGGATGACGGGGAAAACTGGTTTTGTATAAGTCTAGACGTAATTGAACCTCTCTGAAACTACAAAATTTTGCTATGAGTAAAAATGAAATAGGACC</canonical>
            <polymorphic>CAGCCATAGAAAACATTTATACATAGTTTCACAGAGGGTAAAATTCCGTTTGGACTTACACAGAACCCGTCTTACCCGTCACCCTTTCTAGTTATCAGACCCAGTTCTTTGGTTGCTACAATATTTCTGAAATTTTTGGATGTTCTCAGAATTCTTGAAAGTTCAATTACACCGAACCAAAACAGCAAATGATTGAACGCATACTCTAACTTCAAAAATCTCAGAAAAACTCCGGCTCCTCCATTACCTGCAAATCCAGTACCCATAGAATATACCACAACAGTTGTATCTAGTTGTAAATAATCAAAAAGACCTCGGGAATAATATGCGATGTATGGAAAAAATACGACGGGAACCAGACCGACACACATAGTCGCACTATAAAAAGTTACCCAGAACTGATGAGCCAAAAGAAGACATTTTGAGATGATCAAATGTTTTGGAGTCAATTTGCAAATGCAATATATTGCAAATAATGAGAGTGGAATTTCGATTGCCAYAATCACATGTAGGAAAACTGACGAAGCTGTGTGATTTACTTCGGAAGAATTTTGGCAAGAATCCGGAAGTGAAACCATTGAGGGAATGAAGCAATGAGTTGTTTTCATTCTTTTATATATCAATTTTTTAATGACTTTTTCATTTACCGATGAAGGCTGAAAAACTACAAGGCACATGGGAAAAACAAAGCAAGGTGATGAGATCAATAACAATTCACAATTAGTATTTAACAGACTTCGTGCTGCATTCCACTTTAACCGTACTATTCCTCGAGCCAGATTTGCCTGAAAAATAAGATGATGATGTGTTGGTTCGATGTAATTTAACTTTCAAGAATTCTGAGAACATCTAAAAAATTCAAAAAAAATTGTAGCAACTAAAGAACTGGGTCTGATAACTAGAAAGGATGACGGGGAAAACTGGTTTTGTATAAGTCTAGACGTAATTGAACCTCTCTGAAACTACAAAATTTTGCTATGAGTAAAAATGAAATAGGACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>192 106 106 103 90 89 56 38 31 29 26 25 23 21 20 15 10 10 6 2 2</canonical_bands>
                <polymorphic_bands>192 106 106 103 90 89 56 38 31 29 26 25 23 21 21 20 10 10 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGAAGACATTTTGAGATGA</pcr_primer_p1>
		<pcr_primer_p2>CTTCATCGGTAAATGAAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGAAGACATTTTGAGATGATCAAATGTTTTGGAGTCAATTTGCAAATGCAATATATTGCAAATAATGAGAGTGGAATTTCGATTGCCACAATCACATGTAGGAAAACTGACGAAGCTGTGTGATTTACTTCGGAAGAATTTTGGCAAGAATCCGGAAGTGAAACCATTGAGGGAATGAAGCAATGAGTTGTTTTCATTCTTTTATATATCAATTTTTTAATGACTTTTTCATTTACCGATGAAG</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGAAGACATTTTGAGATGATCAAATGTTTTGGAGTCAATTTGCAAATGCAATATATTGCAAATAATGAGAGTGGAATTTCGATTGCCAYAATCACATGTAGGAAAACTGACGAAGCTGTGTGATTTACTTCGGAAGAATTTTGGCAAGAATCCGGAAGTGAAACCATTGAGGGAATGAAGCAATGAGTTGTTTTCATTCTTTTATATATCAATTTTTTAATGACTTTTTCATTTACCGATGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19588</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>339791</contig_pos>
        <strand>+</strand>
        <context>TCAATTTGCA[A/T]ATGCAATATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCCAAAAGAAGACATTTTGAGATGATCAAATGTTTTGGAGTCAATTTGCA</left_flank>
        <right_flank>ATGCAATATATTGCAAATAATGAGAGTGGAATTTCGATTGCCACAATCAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACTTCCTTGTTGTTTGATTTCGTTCTAGCCCTATTTCATTTCCAGCCATAGAAAACATTTATACATAGTTTCACAGAGGGTAAAATTCCGTTTGGACTTACACAGAACCCGTCTTACCCGTCACCCTTTCTAGTTATCAGACCCAGTTCTTTGGTTGCTACAATATTTCTGAAATTTTTGGATGTTCTCAGAATTCTTGAAAGTTCAATTACACCGAACCAAAACAGCAAATGATTGAACGCATACTCTAACTTCAAAAATCTCAGAAAAACTCCGGCTCCTCCATTACCTGCAAATCCAGTACCCATAGAATATACCACAACAGTTGTATCTAGTTGTAAATAATCAAAAAGACCTCGGGAATAATATGCGATGTATGGAAAAAATACGACGGGAACCAGACCGACACACATAGTCGCACTATAAAAAGTTACCCAGAACTGATGAGCCAAAAGAAGACATTTTGAGATGATCAAATGTTTTGGAGTCAATTTGCAAATGCAATATATTGCAAATAATGAGAGTGGAATTTCGATTGCCACAATCACATGTAGGAAAACTGACGAAGCTGTGTGATTTACTTCGGAAGAATTTTGGCAAGAATCCGGAAGTGAAACCATTGAGGGAATGAAGCAATGAGTTGTTTTCATTCTTTTATATATCAATTTTTTAATGACTTTTTCATTTACCGATGAAGGCTGAAAAACTACAAGGCACATGGGAAAAACAAAGCAAGGTGATGAGATCAATAACAATTCACAATTAGTATTTAACAGACTTCGTGCTGCATTCCACTTTAACCGTACTATTCCTCGAGCCAGATTTGCCTGAAAAATAAGATGATGATGTGTTGGTTCGATGTAATTTAACTTTCAAGAATTCTGAGAACATCTAAAAAATTCAAAAAAAATTGTAGCAACTAAAGAACTGGGTCTGATAACTAGAAAGGATGACGGGGAAAACTGGTTTTGTATAAGTCTAGACGTAATTGAACCTCT</canonical>
            <polymorphic>TAACTTCCTTGTTGTTTGATTTCGTTCTAGCCCTATTTCATTTCCAGCCATAGAAAACATTTATACATAGTTTCACAGAGGGTAAAATTCCGTTTGGACTTACACAGAACCCGTCTTACCCGTCACCCTTTCTAGTTATCAGACCCAGTTCTTTGGTTGCTACAATATTTCTGAAATTTTTGGATGTTCTCAGAATTCTTGAAAGTTCAATTACACCGAACCAAAACAGCAAATGATTGAACGCATACTCTAACTTCAAAAATCTCAGAAAAACTCCGGCTCCTCCATTACCTGCAAATCCAGTACCCATAGAATATACCACAACAGTTGTATCTAGTTGTAAATAATCAAAAAGACCTCGGGAATAATATGCGATGTATGGAAAAAATACGACGGGAACCAGACCGACACACATAGTCGCACTATAAAAAGTTACCCAGAACTGATGAGCCAAAAGAAGACATTTTGAGATGATCAAATGTTTTGGAGTCAATTTGCAWATGCAATATATTGCAAATAATGAGAGTGGAATTTCGATTGCCACAATCACATGTAGGAAAACTGACGAAGCTGTGTGATTTACTTCGGAAGAATTTTGGCAAGAATCCGGAAGTGAAACCATTGAGGGAATGAAGCAATGAGTTGTTTTCATTCTTTTATATATCAATTTTTTAATGACTTTTTCATTTACCGATGAAGGCTGAAAAACTACAAGGCACATGGGAAAAACAAAGCAAGGTGATGAGATCAATAACAATTCACAATTAGTATTTAACAGACTTCGTGCTGCATTCCACTTTAACCGTACTATTCCTCGAGCCAGATTTGCCTGAAAAATAAGATGATGATGTGTTGGTTCGATGTAATTTAACTTTCAAGAATTCTGAGAACATCTAAAAAATTCAAAAAAAATTGTAGCAACTAAAGAACTGGGTCTGATAACTAGAAAGGATGACGGGGAAAACTGGTTTTGTATAAGTCTAGACGTAATTGAACCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAGCCAAAAGAAGACATTT</pcr_primer_p1>
		<pcr_primer_p2>CGGTAAATGAAAAAGTCATTAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATGAGCCAAAAGAAGACATTTTGAGATGATCAAATGTTTTGGAGTCAATTTGCAAATGCAATATATTGCAAATAATGAGAGTGGAATTTCGATTGCCACAATCACATGTAGGAAAACTGACGAAGCTGTGTGATTTACTTCGGAAGAATTTTGGCAAGAATCCGGAAGTGAAACCATTGAGGGAATGAAGCAATGAGTTGTTTTCATTCTTTTATATATCAATTTTTTAATGACTTTTTCATTTACCG</canonical_amplicon>
		<polymorphic_amplicon>ATGAGCCAAAAGAAGACATTTTGAGATGATCAAATGTTTTGGAGTCAATTTGCAWATGCAATATATTGCAAATAATGAGAGTGGAATTTCGATTGCCACAATCACATGTAGGAAAACTGACGAAGCTGTGTGATTTACTTCGGAAGAATTTTGGCAAGAATCCGGAAGTGAAACCATTGAGGGAATGAAGCAATGAGTTGTTTTCATTCTTTTATATATCAATTTTTTAATGACTTTTTCATTTACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19589</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>339608</contig_pos>
        <strand>+</strand>
        <context>CCATAGAATA[G/T]ACCACAACAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGAAAAACTCCGGCTCCTCCATTACCTGCAAATCCAGTACCCATAGAATA</left_flank>
        <right_flank>ACCACAACAGTTGTATCTAGTTGTAAATAATCAAAAAGACCTCGGGAATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTCACGTCAGAATTCATACCGTAACTCCAAAAAAAACTCCGATAATCTCCTGTCCTCCCCTCAATCAACTTCAAGGTTGTCGAAAACAGGGCCGCGCTTTTTGGTTAGGGTATTTTTGGCATGGGTAGGATTCGGCAGACTAGCGGCCCTAAAAGTTTCTCGTTGTTTCCAACAGCCTTCACTAACTTCCTTGTTGTTTGATTTCGTTCTAGCCCTATTTCATTTCCAGCCATAGAAAACATTTATACATAGTTTCACAGAGGGTAAAATTCCGTTTGGACTTACACAGAACCCGTCTTACCCGTCACCCTTTCTAGTTATCAGACCCAGTTCTTTGGTTGCTACAATATTTCTGAAATTTTTGGATGTTCTCAGAATTCTTGAAAGTTCAATTACACCGAACCAAAACAGCAAATGATTGAACGCATACTCTAACTTCAAAAATCTCAGAAAAACTCCGGCTCCTCCATTACCTGCAAATCCAGTACCCATAGAATATACCACAACAGTTGTATCTAGTTGTAAATAATCAAAAAGACCTCGGGAATAATATGCGATGTATGGAAAAAATACGACGGGAACCAGACCGACACACATAGTCGCACTATAAAAAGTTACCCAGAACTGATGAGCCAAAAGAAGACATTTTGAGATGATCAAATGTTTTGGAGTCAATTTGCAAATGCAATATATTGCAAATAATGAGAGTGGAATTTCGATTGCCACAATCACATGTAGGAAAACTGACGAAGCTGTGTGATTTACTTCGGAAGAATTTTGGCAAGAATCCGGAAGTGAAACCATTGAGGGAATGAAGCAATGAGTTGTTTTCATTCTTTTATATATCAATTTTTTAATGACTTTTTCATTTACCGATGAAGGCTGAAAAACTACAAGGCACATGGGAAAAACAAAGCAAGGTGATGAGATCAATAACAATTCACAATTAGTATTTAACAGACTTCGTGCTGCATTCCACTTTAACCGTACTATTCCTCG</canonical>
            <polymorphic>CGTCACGTCAGAATTCATACCGTAACTCCAAAAAAAACTCCGATAATCTCCTGTCCTCCCCTCAATCAACTTCAAGGTTGTCGAAAACAGGGCCGCGCTTTTTGGTTAGGGTATTTTTGGCATGGGTAGGATTCGGCAGACTAGCGGCCCTAAAAGTTTCTCGTTGTTTCCAACAGCCTTCACTAACTTCCTTGTTGTTTGATTTCGTTCTAGCCCTATTTCATTTCCAGCCATAGAAAACATTTATACATAGTTTCACAGAGGGTAAAATTCCGTTTGGACTTACACAGAACCCGTCTTACCCGTCACCCTTTCTAGTTATCAGACCCAGTTCTTTGGTTGCTACAATATTTCTGAAATTTTTGGATGTTCTCAGAATTCTTGAAAGTTCAATTACACCGAACCAAAACAGCAAATGATTGAACGCATACTCTAACTTCAAAAATCTCAGAAAAACTCCGGCTCCTCCATTACCTGCAAATCCAGTACCCATAGAATAKACCACAACAGTTGTATCTAGTTGTAAATAATCAAAAAGACCTCGGGAATAATATGCGATGTATGGAAAAAATACGACGGGAACCAGACCGACACACATAGTCGCACTATAAAAAGTTACCCAGAACTGATGAGCCAAAAGAAGACATTTTGAGATGATCAAATGTTTTGGAGTCAATTTGCAAATGCAATATATTGCAAATAATGAGAGTGGAATTTCGATTGCCACAATCACATGTAGGAAAACTGACGAAGCTGTGTGATTTACTTCGGAAGAATTTTGGCAAGAATCCGGAAGTGAAACCATTGAGGGAATGAAGCAATGAGTTGTTTTCATTCTTTTATATATCAATTTTTTAATGACTTTTTCATTTACCGATGAAGGCTGAAAAACTACAAGGCACATGGGAAAAACAAAGCAAGGTGATGAGATCAATAACAATTCACAATTAGTATTTAACAGACTTCGTGCTGCATTCCACTTTAACCGTACTATTCCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTGAAAGTTCAATTACACC</pcr_primer_p1>
		<pcr_primer_p2>TTCTGGGTAACTTTTTATAGTGC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTGAAAGTTCAATTACACCGAACCAAAACAGCAAATGATTGAACGCATACTCTAACTTCAAAAATCTCAGAAAAACTCCGGCTCCTCCATTACCTGCAAATCCAGTACCCATAGAATATACCACAACAGTTGTATCTAGTTGTAAATAATCAAAAAGACCTCGGGAATAATATGCGATGTATGGAAAAAATACGACGGGAACCAGACCGACACACATAGTCGCACTATAAAAAGTTACCCAGAA</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTGAAAGTTCAATTACACCGAACCAAAACAGCAAATGATTGAACGCATACTCTAACTTCAAAAATCTCAGAAAAACTCCGGCTCCTCCATTACCTGCAAATCCAGTACCCATAGAATAKACCACAACAGTTGTATCTAGTTGTAAATAATCAAAAAGACCTCGGGAATAATATGCGATGTATGGAAAAAATACGACGGGAACCAGACCGACACACATAGTCGCACTATAAAAAGTTACCCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19590</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>339533</contig_pos>
        <strand>+</strand>
        <context>AATGATTGAA[A/C]GCATACTCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAATTCTTGAAAGTTCAATTACACCGAACCAAAACAGCAAATGATTGAA</left_flank>
        <right_flank>GCATACTCTAACTTCAAAAATCTCAGAAAAACTCCGGCTCCTCCATTACC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCCACTACCGACTGTGCCACGCGGGCAAGAGCGTGCGAAGGCGGACACCACATCTGTAGACTAGTATTGTACACCGTCACGTCAGAATTCATACCGTAACTCCAAAAAAAACTCCGATAATCTCCTGTCCTCCCCTCAATCAACTTCAAGGTTGTCGAAAACAGGGCCGCGCTTTTTGGTTAGGGTATTTTTGGCATGGGTAGGATTCGGCAGACTAGCGGCCCTAAAAGTTTCTCGTTGTTTCCAACAGCCTTCACTAACTTCCTTGTTGTTTGATTTCGTTCTAGCCCTATTTCATTTCCAGCCATAGAAAACATTTATACATAGTTTCACAGAGGGTAAAATTCCGTTTGGACTTACACAGAACCCGTCTTACCCGTCACCCTTTCTAGTTATCAGACCCAGTTCTTTGGTTGCTACAATATTTCTGAAATTTTTGGATGTTCTCAGAATTCTTGAAAGTTCAATTACACCGAACCAAAACAGCAAATGATTGAACGCATACTCTAACTTCAAAAATCTCAGAAAAACTCCGGCTCCTCCATTACCTGCAAATCCAGTACCCATAGAATATACCACAACAGTTGTATCTAGTTGTAAATAATCAAAAAGACCTCGGGAATAATATGCGATGTATGGAAAAAATACGACGGGAACCAGACCGACACACATAGTCGCACTATAAAAAGTTACCCAGAACTGATGAGCCAAAAGAAGACATTTTGAGATGATCAAATGTTTTGGAGTCAATTTGCAAATGCAATATATTGCAAATAATGAGAGTGGAATTTCGATTGCCACAATCACATGTAGGAAAACTGACGAAGCTGTGTGATTTACTTCGGAAGAATTTTGGCAAGAATCCGGAAGTGAAACCATTGAGGGAATGAAGCAATGAGTTGTTTTCATTCTTTTATATATCAATTTTTTAATGACTTTTTCATTTACCGATGAAGGCTGAAAAACTACAAGGCACATGGGAAAAACAAAGCAAGGTGA</canonical>
            <polymorphic>CGCCACTACCGACTGTGCCACGCGGGCAAGAGCGTGCGAAGGCGGACACCACATCTGTAGACTAGTATTGTACACCGTCACGTCAGAATTCATACCGTAACTCCAAAAAAAACTCCGATAATCTCCTGTCCTCCCCTCAATCAACTTCAAGGTTGTCGAAAACAGGGCCGCGCTTTTTGGTTAGGGTATTTTTGGCATGGGTAGGATTCGGCAGACTAGCGGCCCTAAAAGTTTCTCGTTGTTTCCAACAGCCTTCACTAACTTCCTTGTTGTTTGATTTCGTTCTAGCCCTATTTCATTTCCAGCCATAGAAAACATTTATACATAGTTTCACAGAGGGTAAAATTCCGTTTGGACTTACACAGAACCCGTCTTACCCGTCACCCTTTCTAGTTATCAGACCCAGTTCTTTGGTTGCTACAATATTTCTGAAATTTTTGGATGTTCTCAGAATTCTTGAAAGTTCAATTACACCGAACCAAAACAGCAAATGATTGAAMGCATACTCTAACTTCAAAAATCTCAGAAAAACTCCGGCTCCTCCATTACCTGCAAATCCAGTACCCATAGAATATACCACAACAGTTGTATCTAGTTGTAAATAATCAAAAAGACCTCGGGAATAATATGCGATGTATGGAAAAAATACGACGGGAACCAGACCGACACACATAGTCGCACTATAAAAAGTTACCCAGAACTGATGAGCCAAAAGAAGACATTTTGAGATGATCAAATGTTTTGGAGTCAATTTGCAAATGCAATATATTGCAAATAATGAGAGTGGAATTTCGATTGCCACAATCACATGTAGGAAAACTGACGAAGCTGTGTGATTTACTTCGGAAGAATTTTGGCAAGAATCCGGAAGTGAAACCATTGAGGGAATGAAGCAATGAGTTGTTTTCATTCTTTTATATATCAATTTTTTAATGACTTTTTCATTTACCGATGAAGGCTGAAAAACTACAAGGCACATGGGAAAAACAAAGCAAGGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTTCTAGTTATCAGACCCAGT</pcr_primer_p1>
		<pcr_primer_p2>ATATTATTCCCGAGGTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CCTTTCTAGTTATCAGACCCAGTTCTTTGGTTGCTACAATATTTCTGAAATTTTTGGATGTTCTCAGAATTCTTGAAAGTTCAATTACACCGAACCAAAACAGCAAATGATTGAACGCATACTCTAACTTCAAAAATCTCAGAAAAACTCCGGCTCCTCCATTACCTGCAAATCCAGTACCCATAGAATATACCACAACAGTTGTATCTAGTTGTAAATAATCAAAAAGACCTCGGGAATAATAT</canonical_amplicon>
		<polymorphic_amplicon>CCTTTCTAGTTATCAGACCCAGTTCTTTGGTTGCTACAATATTTCTGAAATTTTTGGATGTTCTCAGAATTCTTGAAAGTTCAATTACACCGAACCAAAACAGCAAATGATTGAAMGCATACTCTAACTTCAAAAATCTCAGAAAAACTCCGGCTCCTCCATTACCTGCAAATCCAGTACCCATAGAATATACCACAACAGTTGTATCTAGTTGTAAATAATCAAAAAGACCTCGGGAATAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19591</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>339512</contig_pos>
        <strand>+</strand>
        <context>TTACACCGAA[A/C]CAAAACAGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGAAATTTTTGGATGTTCTCAGAATTCTTGAAAGTTCAATTACACCGAA</left_flank>
        <right_flank>CAAAACAGCAAATGATTGAACGCATACTCTAACTTCAAAAATCTCAGAAA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGACGAGTATTGAAGGTTCCGCGCCACTACCGACTGTGCCACGCGGGCAAGAGCGTGCGAAGGCGGACACCACATCTGTAGACTAGTATTGTACACCGTCACGTCAGAATTCATACCGTAACTCCAAAAAAAACTCCGATAATCTCCTGTCCTCCCCTCAATCAACTTCAAGGTTGTCGAAAACAGGGCCGCGCTTTTTGGTTAGGGTATTTTTGGCATGGGTAGGATTCGGCAGACTAGCGGCCCTAAAAGTTTCTCGTTGTTTCCAACAGCCTTCACTAACTTCCTTGTTGTTTGATTTCGTTCTAGCCCTATTTCATTTCCAGCCATAGAAAACATTTATACATAGTTTCACAGAGGGTAAAATTCCGTTTGGACTTACACAGAACCCGTCTTACCCGTCACCCTTTCTAGTTATCAGACCCAGTTCTTTGGTTGCTACAATATTTCTGAAATTTTTGGATGTTCTCAGAATTCTTGAAAGTTCAATTACACCGAACCAAAACAGCAAATGATTGAACGCATACTCTAACTTCAAAAATCTCAGAAAAACTCCGGCTCCTCCATTACCTGCAAATCCAGTACCCATAGAATATACCACAACAGTTGTATCTAGTTGTAAATAATCAAAAAGACCTCGGGAATAATATGCGATGTATGGAAAAAATACGACGGGAACCAGACCGACACACATAGTCGCACTATAAAAAGTTACCCAGAACTGATGAGCCAAAAGAAGACATTTTGAGATGATCAAATGTTTTGGAGTCAATTTGCAAATGCAATATATTGCAAATAATGAGAGTGGAATTTCGATTGCCACAATCACATGTAGGAAAACTGACGAAGCTGTGTGATTTACTTCGGAAGAATTTTGGCAAGAATCCGGAAGTGAAACCATTGAGGGAATGAAGCAATGAGTTGTTTTCATTCTTTTATATATCAATTTTTTAATGACTTTTTCATTTACCGATGAAGGCTGAAAAACTACAAGGCACAT</canonical>
            <polymorphic>GGACGAGTATTGAAGGTTCCGCGCCACTACCGACTGTGCCACGCGGGCAAGAGCGTGCGAAGGCGGACACCACATCTGTAGACTAGTATTGTACACCGTCACGTCAGAATTCATACCGTAACTCCAAAAAAAACTCCGATAATCTCCTGTCCTCCCCTCAATCAACTTCAAGGTTGTCGAAAACAGGGCCGCGCTTTTTGGTTAGGGTATTTTTGGCATGGGTAGGATTCGGCAGACTAGCGGCCCTAAAAGTTTCTCGTTGTTTCCAACAGCCTTCACTAACTTCCTTGTTGTTTGATTTCGTTCTAGCCCTATTTCATTTCCAGCCATAGAAAACATTTATACATAGTTTCACAGAGGGTAAAATTCCGTTTGGACTTACACAGAACCCGTCTTACCCGTCACCCTTTCTAGTTATCAGACCCAGTTCTTTGGTTGCTACAATATTTCTGAAATTTTTGGATGTTCTCAGAATTCTTGAAAGTTCAATTACACCGAAMCAAAACAGCAAATGATTGAACGCATACTCTAACTTCAAAAATCTCAGAAAAACTCCGGCTCCTCCATTACCTGCAAATCCAGTACCCATAGAATATACCACAACAGTTGTATCTAGTTGTAAATAATCAAAAAGACCTCGGGAATAATATGCGATGTATGGAAAAAATACGACGGGAACCAGACCGACACACATAGTCGCACTATAAAAAGTTACCCAGAACTGATGAGCCAAAAGAAGACATTTTGAGATGATCAAATGTTTTGGAGTCAATTTGCAAATGCAATATATTGCAAATAATGAGAGTGGAATTTCGATTGCCACAATCACATGTAGGAAAACTGACGAAGCTGTGTGATTTACTTCGGAAGAATTTTGGCAAGAATCCGGAAGTGAAACCATTGAGGGAATGAAGCAATGAGTTGTTTTCATTCTTTTATATATCAATTTTTTAATGACTTTTTCATTTACCGATGAAGGCTGAAAAACTACAAGGCACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTTCTAGTTATCAGACCCAGT</pcr_primer_p1>
		<pcr_primer_p2>ATATTATTCCCGAGGTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CCTTTCTAGTTATCAGACCCAGTTCTTTGGTTGCTACAATATTTCTGAAATTTTTGGATGTTCTCAGAATTCTTGAAAGTTCAATTACACCGAACCAAAACAGCAAATGATTGAACGCATACTCTAACTTCAAAAATCTCAGAAAAACTCCGGCTCCTCCATTACCTGCAAATCCAGTACCCATAGAATATACCACAACAGTTGTATCTAGTTGTAAATAATCAAAAAGACCTCGGGAATAATAT</canonical_amplicon>
		<polymorphic_amplicon>CCTTTCTAGTTATCAGACCCAGTTCTTTGGTTGCTACAATATTTCTGAAATTTTTGGATGTTCTCAGAATTCTTGAAAGTTCAATTACACCGAAMCAAAACAGCAAATGATTGAACGCATACTCTAACTTCAAAAATCTCAGAAAAACTCCGGCTCCTCCATTACCTGCAAATCCAGTACCCATAGAATATACCACAACAGTTGTATCTAGTTGTAAATAATCAAAAAGACCTCGGGAATAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19592</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>339447</contig_pos>
        <strand>+</strand>
        <context>CAGTTCTTTR[A/G]TTGCTACAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAACCCGTCTTACCCGTCACCCTTTCTAGTTATCAGACCCAGTTCTTTG</left_flank>
        <right_flank>TTGCTACAATATTTCTGAAATTTTTGGATGTTCTCAGAATTCTTGAAAGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGTTAAAAAATAACTGTTTCGAAACTTTATTCATATAAGCCTCGCGAGGAGTTCAACTTATGGGACGAGTATTGAAGGTTCCGCGCCACTACCGACTGTGCCACGCGGGCAAGAGCGTGCGAAGGCGGACACCACATCTGTAGACTAGTATTGTACACCGTCACGTCAGAATTCATACCGTAACTCCAAAAAAAACTCCGATAATCTCCTGTCCTCCCCTCAATCAACTTCAAGGTTGTCGAAAACAGGGCCGCGCTTTTTGGTTAGGGTATTTTTGGCATGGGTAGGATTCGGCAGACTAGCGGCCCTAAAAGTTTCTCGTTGTTTCCAACAGCCTTCACTAACTTCCTTGTTGTTTGATTTCGTTCTAGCCCTATTTCATTTCCAGCCATAGAAAACATTTATACATAGTTTCACAGAGGGTAAAATTCCGTTTGGACTTACACAGAACCCGTCTTACCCGTCACCCTTTCTAGTTATCAGACCCAGTTCTTTGGTTGCTACAATATTTCTGAAATTTTTGGATGTTCTCAGAATTCTTGAAAGTTCAATTACACCGAACCAAAACAGCAAATGATTGAACGCATACTCTAACTTCAAAAATCTCAGAAAAACTCCGGCTCCTCCATTACCTGCAAATCCAGTACCCATAGAATATACCACAACAGTTGTATCTAGTTGTAAATAATCAAAAAGACCTCGGGAATAATATGCGATGTATGGAAAAAATACGACGGGAACCAGACCGACACACATAGTCGCACTATAAAAAGTTACCCAGAACTGATGAGCCAAAAGAAGACATTTTGAGATGATCAAATGTTTTGGAGTCAATTTGCAAATGCAATATATTGCAAATAATGAGAGTGGAATTTCGATTGCCACAATCACATGTAGGAAAACTGACGAAGCTGTGTGATTTACTTCGGAAGAATTTTGGCAAGAATCCGGAAGTGAAACCATTGAGGGAATGAAGCAATGAGTTGTTTTCATTCTT</canonical>
            <polymorphic>AATTGTTAAAAAATAACTGTTTCGAAACTTTATTCATATAAGCCTCGCGAGGAGTTCAACTTATGGGACGAGTATTGAAGGTTCCGCGCCACTACCGACTGTGCCACGCGGGCAAGAGCGTGCGAAGGCGGACACCACATCTGTAGACTAGTATTGTACACCGTCACGTCAGAATTCATACCGTAACTCCAAAAAAAACTCCGATAATCTCCTGTCCTCCCCTCAATCAACTTCAAGGTTGTCGAAAACAGGGCCGCGCTTTTTGGTTAGGGTATTTTTGGCATGGGTAGGATTCGGCAGACTAGCGGCCCTAAAAGTTTCTCGTTGTTTCCAACAGCCTTCACTAACTTCCTTGTTGTTTGATTTCGTTCTAGCCCTATTTCATTTCCAGCCATAGAAAACATTTATACATAGTTTCACAGAGGGTAAAATTCCGTTTGGACTTACACAGAACCCGTCTTACCCGTCACCCTTTCTAGTTATCAGACCCAGTTCTTTGRTTGCTACAATATTTCTGAAATTTTTGGATGTTCTCAGAATTCTTGAAAGTTCAATTACACCGAACCAAAACAGCAAATGATTGAACGCATACTCTAACTTCAAAAATCTCAGAAAAACTCCGGCTCCTCCATTACCTGCAAATCCAGTACCCATAGAATATACCACAACAGTTGTATCTAGTTGTAAATAATCAAAAAGACCTCGGGAATAATATGCGATGTATGGAAAAAATACGACGGGAACCAGACCGACACACATAGTCGCACTATAAAAAGTTACCCAGAACTGATGAGCCAAAAGAAGACATTTTGAGATGATCAAATGTTTTGGAGTCAATTTGCAAATGCAATATATTGCAAATAATGAGAGTGGAATTTCGATTGCCACAATCACATGTAGGAAAACTGACGAAGCTGTGTGATTTACTTCGGAAGAATTTTGGCAAGAATCCGGAAGTGAAACCATTGAGGGAATGAAGCAATGAGTTGTTTTCATTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>BstXI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTTCTAGCCCTATTTCATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTGAGATTTTTGAAGTTAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTTCTAGCCCTATTTCATTTCCAGCCATAGAAAACATTTATACATAGTTTCACAGAGGGTAAAATTCCGTTTGGACTTACACAGAACCCGTCTTACCCGTCACCCTTTCTAGTTATCAGACCCAGTTCTTTGGTTGCTACAATATTTCTGAAATTTTTGGATGTTCTCAGAATTCTTGAAAGTTCAATTACACCGAACCAAAACAGCAAATGATTGAACGCATACTCTAACTTCAAAAATCTCAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>CGTTCTAGCCCTATTTCATTTCCAGCCATAGAAAACATTTATACATAGTTTCACAGAGGGTAAAATTCCGTTTGGACTTACACAGAACCCGTCTTACCCGTCACCCTTTCTAGTTATCAGACCCAGTTCTTTGRTTGCTACAATATTTCTGAAATTTTTGGATGTTCTCAGAATTCTTGAAAGTTCAATTACACCGAACCAAAACAGCAAATGATTGAACGCATACTCTAACTTCAAAAATCTCAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19593</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>339446</contig_pos>
        <strand>+</strand>
        <context>CCAGTTCTTT[A/G]RTTGCTACAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGAACCCGTCTTACCCGTCACCCTTTCTAGTTATCAGACCCAGTTCTTT</left_flank>
        <right_flank>GTTGCTACAATATTTCTGAAATTTTTGGATGTTCTCAGAATTCTTGAAAG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTGTTAAAAAATAACTGTTTCGAAACTTTATTCATATAAGCCTCGCGAGGAGTTCAACTTATGGGACGAGTATTGAAGGTTCCGCGCCACTACCGACTGTGCCACGCGGGCAAGAGCGTGCGAAGGCGGACACCACATCTGTAGACTAGTATTGTACACCGTCACGTCAGAATTCATACCGTAACTCCAAAAAAAACTCCGATAATCTCCTGTCCTCCCCTCAATCAACTTCAAGGTTGTCGAAAACAGGGCCGCGCTTTTTGGTTAGGGTATTTTTGGCATGGGTAGGATTCGGCAGACTAGCGGCCCTAAAAGTTTCTCGTTGTTTCCAACAGCCTTCACTAACTTCCTTGTTGTTTGATTTCGTTCTAGCCCTATTTCATTTCCAGCCATAGAAAACATTTATACATAGTTTCACAGAGGGTAAAATTCCGTTTGGACTTACACAGAACCCGTCTTACCCGTCACCCTTTCTAGTTATCAGACCCAGTTCTTTGGTTGCTACAATATTTCTGAAATTTTTGGATGTTCTCAGAATTCTTGAAAGTTCAATTACACCGAACCAAAACAGCAAATGATTGAACGCATACTCTAACTTCAAAAATCTCAGAAAAACTCCGGCTCCTCCATTACCTGCAAATCCAGTACCCATAGAATATACCACAACAGTTGTATCTAGTTGTAAATAATCAAAAAGACCTCGGGAATAATATGCGATGTATGGAAAAAATACGACGGGAACCAGACCGACACACATAGTCGCACTATAAAAAGTTACCCAGAACTGATGAGCCAAAAGAAGACATTTTGAGATGATCAAATGTTTTGGAGTCAATTTGCAAATGCAATATATTGCAAATAATGAGAGTGGAATTTCGATTGCCACAATCACATGTAGGAAAACTGACGAAGCTGTGTGATTTACTTCGGAAGAATTTTGGCAAGAATCCGGAAGTGAAACCATTGAGGGAATGAAGCAATGAGTTGTTTTCATTCT</canonical>
            <polymorphic>AAATTGTTAAAAAATAACTGTTTCGAAACTTTATTCATATAAGCCTCGCGAGGAGTTCAACTTATGGGACGAGTATTGAAGGTTCCGCGCCACTACCGACTGTGCCACGCGGGCAAGAGCGTGCGAAGGCGGACACCACATCTGTAGACTAGTATTGTACACCGTCACGTCAGAATTCATACCGTAACTCCAAAAAAAACTCCGATAATCTCCTGTCCTCCCCTCAATCAACTTCAAGGTTGTCGAAAACAGGGCCGCGCTTTTTGGTTAGGGTATTTTTGGCATGGGTAGGATTCGGCAGACTAGCGGCCCTAAAAGTTTCTCGTTGTTTCCAACAGCCTTCACTAACTTCCTTGTTGTTTGATTTCGTTCTAGCCCTATTTCATTTCCAGCCATAGAAAACATTTATACATAGTTTCACAGAGGGTAAAATTCCGTTTGGACTTACACAGAACCCGTCTTACCCGTCACCCTTTCTAGTTATCAGACCCAGTTCTTTRGTTGCTACAATATTTCTGAAATTTTTGGATGTTCTCAGAATTCTTGAAAGTTCAATTACACCGAACCAAAACAGCAAATGATTGAACGCATACTCTAACTTCAAAAATCTCAGAAAAACTCCGGCTCCTCCATTACCTGCAAATCCAGTACCCATAGAATATACCACAACAGTTGTATCTAGTTGTAAATAATCAAAAAGACCTCGGGAATAATATGCGATGTATGGAAAAAATACGACGGGAACCAGACCGACACACATAGTCGCACTATAAAAAGTTACCCAGAACTGATGAGCCAAAAGAAGACATTTTGAGATGATCAAATGTTTTGGAGTCAATTTGCAAATGCAATATATTGCAAATAATGAGAGTGGAATTTCGATTGCCACAATCACATGTAGGAAAACTGACGAAGCTGTGTGATTTACTTCGGAAGAATTTTGGCAAGAATCCGGAAGTGAAACCATTGAGGGAATGAAGCAATGAGTTGTTTTCATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>BstXI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTTCTAGCCCTATTTCATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTGAGATTTTTGAAGTTAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTTCTAGCCCTATTTCATTTCCAGCCATAGAAAACATTTATACATAGTTTCACAGAGGGTAAAATTCCGTTTGGACTTACACAGAACCCGTCTTACCCGTCACCCTTTCTAGTTATCAGACCCAGTTCTTTGGTTGCTACAATATTTCTGAAATTTTTGGATGTTCTCAGAATTCTTGAAAGTTCAATTACACCGAACCAAAACAGCAAATGATTGAACGCATACTCTAACTTCAAAAATCTCAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>CGTTCTAGCCCTATTTCATTTCCAGCCATAGAAAACATTTATACATAGTTTCACAGAGGGTAAAATTCCGTTTGGACTTACACAGAACCCGTCTTACCCGTCACCCTTTCTAGTTATCAGACCCAGTTCTTTRGTTGCTACAATATTTCTGAAATTTTTGGATGTTCTCAGAATTCTTGAAAGTTCAATTACACCGAACCAAAACAGCAAATGATTGAACGCATACTCTAACTTCAAAAATCTCAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19596</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>360146</contig_pos>
        <strand>+</strand>
        <context>TGACAGTAAG[A/G]GGGGAAATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGGGGGAAAATGTTGTCATAGATGTACAGACACATAAGTGACAGTAAG</left_flank>
        <right_flank>GGGGAAATAAATTGAAAATTAAAAGGTATGATTCCTAGTCGTCTTGTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGGCTAATCAACCCAAAAAAATGTTTCATTATGTCGCAAGTACATTATCCCAAACGACAAGATGCCATTGTGATGAGTGAACAAAAAAAGTAGACCTCCCAGCTTATAATTGCCATTCGTTTTGCGAGAAGAGAACATTGAAATTGCGTAAGATAGATTCGCGCTTACAAAGATTACGCCGTGGAGAAAGGAATGAGGAACATGATCTCTTAAGCATGATTGTTCAAATGGTGATTAATCTTCATAACTGAACATCTCTGATAGTGATGTTTTCAGAATTTATAGAAACAGTTTTGAATCCCAGGTTTGGAGGTCAGGACTAATTTTTGGAGTAGTTCCAAACCCTGCAAGTTTCAGATCAATATGCGAAAGTTGGATTTATTTCAAAATGGGGACCACATTGCTAAACAGGTGAATTGAATTGAGAACGATTGGAAGGATGATGAGGAAGGGGGAAAATGTTGTCATAGATGTACAGACACATAAGTGACAGTAAGGGGGGAAATAAATTGAAAATTAAAAGGTATGATTCCTAGTCGTCTTGTTCACACTGTTTACTTGCGTCCAGCGGTGGCGTATCCGGCTGGTGGTGGTGGTGGGGCGGCGTAAGAGGCAGCTGGTGGTGGAGCAGCGTAGGCTGGAGCTGGGGCGGCTCCGCATCCTCCTCCGCAACCGCCTCCTCCGAAGGATGGAAGGGAGAGTCTTGGAAGCTCGAATCTTGGGAGTTGGAGTGGTGGAAGTCCTCCTCCTCCGCATCCGCATGGTGGTGGTGGTGGTGGTGGACTGAAAAAGATATGCTTGATCAAGATATATTTCTAGAGCTTATGATTTCCAAAAGAAATTAAAACTTACGCGCATCCACATCCTCCTCCTCCGGATGGAAGAAGGAAGGCCTGAGCGACGGCGATGGTTGTGAAGAAAAGAACGATCTTTTGCATGTTGAAGAAAGTTGTTGAAAGTCGAAGACTATACTTTTTCCAGCCTCGACTCGAGCCTTT</canonical>
            <polymorphic>CAAGGCTAATCAACCCAAAAAAATGTTTCATTATGTCGCAAGTACATTATCCCAAACGACAAGATGCCATTGTGATGAGTGAACAAAAAAAGTAGACCTCCCAGCTTATAATTGCCATTCGTTTTGCGAGAAGAGAACATTGAAATTGCGTAAGATAGATTCGCGCTTACAAAGATTACGCCGTGGAGAAAGGAATGAGGAACATGATCTCTTAAGCATGATTGTTCAAATGGTGATTAATCTTCATAACTGAACATCTCTGATAGTGATGTTTTCAGAATTTATAGAAACAGTTTTGAATCCCAGGTTTGGAGGTCAGGACTAATTTTTGGAGTAGTTCCAAACCCTGCAAGTTTCAGATCAATATGCGAAAGTTGGATTTATTTCAAAATGGGGACCACATTGCTAAACAGGTGAATTGAATTGAGAACGATTGGAAGGATGATGAGGAAGGGGGAAAATGTTGTCATAGATGTACAGACACATAAGTGACAGTAAGRGGGGAAATAAATTGAAAATTAAAAGGTATGATTCCTAGTCGTCTTGTTCACACTGTTTACTTGCGTCCAGCGGTGGCGTATCCGGCTGGTGGTGGTGGTGGGGCGGCGTAAGAGGCAGCTGGTGGTGGAGCAGCGTAGGCTGGAGCTGGGGCGGCTCCGCATCCTCCTCCGCAACCGCCTCCTCCGAAGGATGGAAGGGAGAGTCTTGGAAGCTCGAATCTTGGGAGTTGGAGTGGTGGAAGTCCTCCTCCTCCGCATCCGCATGGTGGTGGTGGTGGTGGTGGACTGAAAAAGATATGCTTGATCAAGATATATTTCTAGAGCTTATGATTTCCAAAAGAAATTAAAACTTACGCGCATCCACATCCTCCTCCTCCGGATGGAAGAAGGAAGGCCTGAGCGACGGCGATGGTTGTGAAGAAAAGAACGATCTTTTGCATGTTGAAGAAAGTTGTTGAAAGTCGAAGACTATACTTTTTCCAGCCTCGACTCGAGCCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGACTAATTTTTGGAGTAGTTCC</pcr_primer_p1>
		<pcr_primer_p2>GCAAGTAAACAGTGTGAACAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGACTAATTTTTGGAGTAGTTCCAAACCCTGCAAGTTTCAGATCAATATGCGAAAGTTGGATTTATTTCAAAATGGGGACCACATTGCTAAACAGGTGAATTGAATTGAGAACGATTGGAAGGATGATGAGGAAGGGGGAAAATGTTGTCATAGATGTACAGACACATAAGTGACAGTAAGGGGGGAAATAAATTGAAAATTAAAAGGTATGATTCCTAGTCGTCTTGTTCACACTGTTTACTTGC</canonical_amplicon>
		<polymorphic_amplicon>GGACTAATTTTTGGAGTAGTTCCAAACCCTGCAAGTTTCAGATCAATATGCGAAAGTTGGATTTATTTCAAAATGGGGACCACATTGCTAAACAGGTGAATTGAATTGAGAACGATTGGAAGGATGATGAGGAAGGGGGAAAATGTTGTCATAGATGTACAGACACATAAGTGACAGTAAGRGGGGAAATAAATTGAAAATTAAAAGGTATGATTCCTAGTCGTCTTGTTCACACTGTTTACTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19597</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>368798</contig_pos>
        <strand></strand>
        <context>GTAAACCATC[T/A]GCAGCCTCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGTTATAGTTCGTTTTTTTTTCGGGAGGGTCCCGCTTGTAGTAAACCATC</left_flank>
        <right_flank>GCAGCCTCGTAGAAATAGAGACTCAGACGACATGAAACAGTTTTGCGTTG</right_flank>
        <qual_score>46</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGATGTATGTTCTGATAATTGTTATCACTTTTCTAATTTCTATTGTACTGATTCCAGAAAGTTCTGATTTCGGTTAAACCAACCAGGAACTATTTCTGAAGATCCCCAAATAAAATATTTTCCATATATTTTAAAACCAAAGTATTCAGCATTTAGAGACATCATTATCTCTAGAGTGATTGATAGCAGAAAATCAATCAAGGCAATTTAAAATTTCAATTAATCACCCAACCCGACGTCTGCGACTTATCACATACCAGTAAAACTGTTTATGTTTCAACCGTAAACTTTCACTTTCCTCTAGCCATCATCTTCTGAACGTCCACATATTTACCTAACCCAGTAACCCTCTGATGTCCTTGAGACTCCCAGTTGTAAACCATCCAACAGAATGCCGACAGACGGAGAAAGAGTACCAATCAATTTTACTACCAACACACCCAGTTTTGTTATAGTTCGTTTTTTTTTCGGGAGGGTCCCGCTTGTAGTAAACCATCTGCAGCCTCGTAGAAATAGAGACTCAGACGACATGAAACAGTTTTGCGTTGTAACAGAGGAAGAGAGCATCAGACCCACGCTAGTGACACTTTTGTGCTGCGTGTGTCCGGACTTTTTGTATCAATCATGCTCTCAGTATCCCCATGTTTCACTTTGTCTGCTTTTTCACTTTATCAAAGTCATGTGACACCATCCGTCACCATACGTTGTCCTGCCCGGCAGGTCTAGGCGCGCCCTTGGTTGCAAAGAATTCGTTTCGTTTCAATCGGGATTCACACTATAACATTTTTCGTGTAGCTGGTTTTTGACATTTTTTCTTGTTCCGGGATTATGAATGTTCGTTTTGACTCAAAACTTTTGAGCTCTTGAAAGGAAAATTAGTTTTTGAGATCATGAAGCGTTTAATTTTCAAGCCAGTGACGCCAAGGCTGTGCCACGGCCGGCTGCGGCATTCTGAAAAGGCTACTTCTGAAATAGGTAGGGTACGGCGGCCTAGCGGC</canonical>
            <polymorphic>TCTGATGTATGTTCTGATAATTGTTATCACTTTTCTAATTTCTATTGTACTGATTCCAGAAAGTTCTGATTTCGGTTAAACCAACCAGGAACTATTTCTGAAGATCCCCAAATAAAATATTTTCCATATATTTTAAAACCAAAGTATTCAGCATTTAGAGACATCATTATCTCTAGAGTGATTGATAGCAGAAAATCAATCAAGGCAATTTAAAATTTCAATTAATCACCCAACCCGACGTCTGCGACTTATCACATACCAGTAAAACTGTTTATGTTTCAACCGTAAACTTTCACTTTCCTCTAGCCATCATCTTCTGAACGTCCACATATTTACCTAACCCAGTAACCCTCTGATGTCCTTGAGACTCCCAGTTGTAAACCATCCAACAGAATGCCGACAGACGGAGAAAGAGTACCAATCAATTTTACTACCAACACACCCAGTTTTGTTATAGTTCGTTTTTTTTTCGGGAGGGTCCCGCTTGTAGTAAACCATCWGCAGCCTCGTAGAAATAGAGACTCAGACGACATGAAACAGTTTTGCGTTGTAACAGAGGAAGAGAGCATCAGACCCACGCTAGTGACACTTTTGTGCTGCGTGTGTCCGGACTTTTTGTATCAATCATGCTCTCAGTATCCCCATGTTTCACTTTGTCTGCTTTTTCACTTTATCAAAGTCATGTGACACCATCCGTCACCATACGTTGTCCTGCCCGGCAGGTCTAGGCGCGCCCTTGGTTGCAAAGAATTCGTTTCGTTTCAATCGGGATTCACACTATAACATTTTTCGTGTAGCTGGTTTTTGACATTTTTTCTTGTTCCGGGATTATGAATGTTCGTTTTGACTCAAAACTTTTGAGCTCTTGAAAGGAAAATTAGTTTTTGAGATCATGAAGCGTTTAATTTTCAAGCCAGTGACGCCAAGGCTGTGCCACGGCCGGCTGCGGCATTCTGAAAAGGCTACTTCTGAAATAGGTAGGGTACGGCGGCCTAGCGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTGCAG</site>
                <isoschizomers>
                    <enzyme>BloHII</enzyme>
                    <enzyme>BstMAI</enzyme>
                    <enzyme>PstI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>501 257 242</canonical_bands>
                <polymorphic_bands>743 257</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAATCAATTTTACTACCAACAC</pcr_primer_p1>
		<pcr_primer_p2>GAAAAAGCAGACAAAGTGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAATCAATTTTACTACCAACACACCCAGTTTTGTTATAGTTCGTTTTTTTTTCGGGAGGGTCCCGCTTGTAGTAAACCATCTGCAGCCTCGTAGAAATAGAGACTCAGACGACATGAAACAGTTTTGCGTTGTAACAGAGGAAGAGAGCATCAGACCCACGCTAGTGACACTTTTGTGCTGCGTGTGTCCGGACTTTTTGTATCAATCATGCTCTCAGTATCCCCATGTTTCACTTTGTCTGCTTTTTC</canonical_amplicon>
		<polymorphic_amplicon>CCAATCAATTTTACTACCAACACACCCAGTTTTGTTATAGTTCGTTTTTTTTTCGGGAGGGTCCCGCTTGTAGTAAACCATCWGCAGCCTCGTAGAAATAGAGACTCAGACGACATGAAACAGTTTTGCGTTGTAACAGAGGAAGAGAGCATCAGACCCACGCTAGTGACACTTTTGTGCTGCGTGTGTCCGGACTTTTTGTATCAATCATGCTCTCAGTATCCCCATGTTTCACTTTGTCTGCTTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19598</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>368821</contig_pos>
        <strand>+</strand>
        <context>AAATAGAGAC[A/T]CAGACGACAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAGGGTCCCGCTTGTAGTAAACCATCTGCAGCCTCGTAGAAATAGAGAC</left_flank>
        <right_flank>CAGACGACATGAAACAGTTTTGCGTTGTAACAGAGGAAGAGAGCATCAGA</right_flank>
        <qual_score>146</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATCACTTTTCTAATTTCTATTGTACTGATTCCAGAAAGTTCTGATTTCGGTTAAACCAACCAGGAACTATTTCTGAAGATCCCCAAATAAAATATTTTCCATATATTTTAAAACCAAAGTATTCAGCATTTAGAGACATCATTATCTCTAGAGTGATTGATAGCAGAAAATCAATCAAGGCAATTTAAAATTTCAATTAATCACCCAACCCGACGTCTGCGACTTATCACATACCAGTAAAACTGTTTATGTTTCAACCGTAAACTTTCACTTTCCTCTAGCCATCATCTTCTGAACGTCCACATATTTACCTAACCCAGTAACCCTCTGATGTCCTTGAGACTCCCAGTTGTAAACCATCCAACAGAATGCCGACAGACGGAGAAAGAGTACCAATCAATTTTACTACCAACACACCCAGTTTTGTTATAGTTCGTTTTTTTTTCGGGAGGGTCCCGCTTGTAGTAAACCATCTGCAGCCTCGTAGAAATAGAGACTCAGACGACATGAAACAGTTTTGCGTTGTAACAGAGGAAGAGAGCATCAGACCCACGCTAGTGACACTTTTGTGCTGCGTGTGTCCGGACTTTTTGTATCAATCATGCTCTCAGTATCCCCATGTTTCACTTTGTCTGCTTTTTCACTTTATCAAAGTCATGTGACACCATCCGTCACCATACGTTGTCCTGCCCGGCAGGTCTAGGCGCGCCCTTGGTTGCAAAGAATTCGTTTCGTTTCAATCGGGATTCACACTATAACATTTTTCGTGTAGCTGGTTTTTGACATTTTTTCTTGTTCCGGGATTATGAATGTTCGTTTTGACTCAAAACTTTTGAGCTCTTGAAAGGAAAATTAGTTTTTGAGATCATGAAGCGTTTAATTTTCAAGCCAGTGACGCCAAGGCTGTGCCACGGCCGGCTGCGGCATTCTGAAAAGGCTACTTCTGAAATAGGTAGGGTACGGCGGCCTAGCGGCCCTAGTAGTTTCTGAGTAGCTGA</canonical>
            <polymorphic>TTATCACTTTTCTAATTTCTATTGTACTGATTCCAGAAAGTTCTGATTTCGGTTAAACCAACCAGGAACTATTTCTGAAGATCCCCAAATAAAATATTTTCCATATATTTTAAAACCAAAGTATTCAGCATTTAGAGACATCATTATCTCTAGAGTGATTGATAGCAGAAAATCAATCAAGGCAATTTAAAATTTCAATTAATCACCCAACCCGACGTCTGCGACTTATCACATACCAGTAAAACTGTTTATGTTTCAACCGTAAACTTTCACTTTCCTCTAGCCATCATCTTCTGAACGTCCACATATTTACCTAACCCAGTAACCCTCTGATGTCCTTGAGACTCCCAGTTGTAAACCATCCAACAGAATGCCGACAGACGGAGAAAGAGTACCAATCAATTTTACTACCAACACACCCAGTTTTGTTATAGTTCGTTTTTTTTTCGGGAGGGTCCCGCTTGTAGTAAACCATCTGCAGCCTCGTAGAAATAGAGACWCAGACGACATGAAACAGTTTTGCGTTGTAACAGAGGAAGAGAGCATCAGACCCACGCTAGTGACACTTTTGTGCTGCGTGTGTCCGGACTTTTTGTATCAATCATGCTCTCAGTATCCCCATGTTTCACTTTGTCTGCTTTTTCACTTTATCAAAGTCATGTGACACCATCCGTCACCATACGTTGTCCTGCCCGGCAGGTCTAGGCGCGCCCTTGGTTGCAAAGAATTCGTTTCGTTTCAATCGGGATTCACACTATAACATTTTTCGTGTAGCTGGTTTTTGACATTTTTTCTTGTTCCGGGATTATGAATGTTCGTTTTGACTCAAAACTTTTGAGCTCTTGAAAGGAAAATTAGTTTTTGAGATCATGAAGCGTTTAATTTTCAAGCCAGTGACGCCAAGGCTGTGCCACGGCCGGCTGCGGCATTCTGAAAAGGCTACTTCTGAAATAGGTAGGGTACGGCGGCCTAGCGGCCCTAGTAGTTTCTGAGTAGCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>499 380 110 11</canonical_bands>
                <polymorphic_bands>609 380 11</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>314 250 177 154 76 29</canonical_bands>
                <polymorphic_bands>404 314 177 76 29</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>384 219 171 46 44 43 36 32 15 10</canonical_bands>
                <polymorphic_bands>384 219 217 44 43 36 32 15 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAATCAATTTTACTACCAACAC</pcr_primer_p1>
		<pcr_primer_p2>GAAAAAGCAGACAAAGTGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAATCAATTTTACTACCAACACACCCAGTTTTGTTATAGTTCGTTTTTTTTTCGGGAGGGTCCCGCTTGTAGTAAACCATCTGCAGCCTCGTAGAAATAGAGACTCAGACGACATGAAACAGTTTTGCGTTGTAACAGAGGAAGAGAGCATCAGACCCACGCTAGTGACACTTTTGTGCTGCGTGTGTCCGGACTTTTTGTATCAATCATGCTCTCAGTATCCCCATGTTTCACTTTGTCTGCTTTTTC</canonical_amplicon>
		<polymorphic_amplicon>CCAATCAATTTTACTACCAACACACCCAGTTTTGTTATAGTTCGTTTTTTTTTCGGGAGGGTCCCGCTTGTAGTAAACCATCTGCAGCCTCGTAGAAATAGAGACWCAGACGACATGAAACAGTTTTGCGTTGTAACAGAGGAAGAGAGCATCAGACCCACGCTAGTGACACTTTTGTGCTGCGTGTGTCCGGACTTTTTGTATCAATCATGCTCTCAGTATCCCCATGTTTCACTTTGTCTGCTTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19599</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>368900</contig_pos>
        <strand>+</strand>
        <context>TTGTGCTGCG[G/T]GTGTYCGGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACAGAGGAAGAGAGCATCAGACCCACGCTAGTGACACTTTTGTGCTGCG</left_flank>
        <right_flank>GTGTCCGGACTTTTTGTATCAATCATGCTCTCAGTATCCCCATGTTTCAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATCCCCAAATAAAATATTTTCCATATATTTTAAAACCAAAGTATTCAGCATTTAGAGACATCATTATCTCTAGAGTGATTGATAGCAGAAAATCAATCAAGGCAATTTAAAATTTCAATTAATCACCCAACCCGACGTCTGCGACTTATCACATACCAGTAAAACTGTTTATGTTTCAACCGTAAACTTTCACTTTCCTCTAGCCATCATCTTCTGAACGTCCACATATTTACCTAACCCAGTAACCCTCTGATGTCCTTGAGACTCCCAGTTGTAAACCATCCAACAGAATGCCGACAGACGGAGAAAGAGTACCAATCAATTTTACTACCAACACACCCAGTTTTGTTATAGTTCGTTTTTTTTTCGGGAGGGTCCCGCTTGTAGTAAACCATCTGCAGCCTCGTAGAAATAGAGACTCAGACGACATGAAACAGTTTTGCGTTGTAACAGAGGAAGAGAGCATCAGACCCACGCTAGTGACACTTTTGTGCTGCGTGTGTCCGGACTTTTTGTATCAATCATGCTCTCAGTATCCCCATGTTTCACTTTGTCTGCTTTTTCACTTTATCAAAGTCATGTGACACCATCCGTCACCATACGTTGTCCTGCCCGGCAGGTCTAGGCGCGCCCTTGGTTGCAAAGAATTCGTTTCGTTTCAATCGGGATTCACACTATAACATTTTTCGTGTAGCTGGTTTTTGACATTTTTTCTTGTTCCGGGATTATGAATGTTCGTTTTGACTCAAAACTTTTGAGCTCTTGAAAGGAAAATTAGTTTTTGAGATCATGAAGCGTTTAATTTTCAAGCCAGTGACGCCAAGGCTGTGCCACGGCCGGCTGCGGCATTCTGAAAAGGCTACTTCTGAAATAGGTAGGGTACGGCGGCCTAGCGGCCCTAGTAGTTTCTGAGTAGCTGAGCTTATTTTCGAAAGCTTTACCGAAACGAAGAATGGAAAATGATTTAATGTGAATACTCTAATAGAATGTCTCCAAACC</canonical>
            <polymorphic>GATCCCCAAATAAAATATTTTCCATATATTTTAAAACCAAAGTATTCAGCATTTAGAGACATCATTATCTCTAGAGTGATTGATAGCAGAAAATCAATCAAGGCAATTTAAAATTTCAATTAATCACCCAACCCGACGTCTGCGACTTATCACATACCAGTAAAACTGTTTATGTTTCAACCGTAAACTTTCACTTTCCTCTAGCCATCATCTTCTGAACGTCCACATATTTACCTAACCCAGTAACCCTCTGATGTCCTTGAGACTCCCAGTTGTAAACCATCCAACAGAATGCCGACAGACGGAGAAAGAGTACCAATCAATTTTACTACCAACACACCCAGTTTTGTTATAGTTCGTTTTTTTTTCGGGAGGGTCCCGCTTGTAGTAAACCATCTGCAGCCTCGTAGAAATAGAGACTCAGACGACATGAAACAGTTTTGCGTTGTAACAGAGGAAGAGAGCATCAGACCCACGCTAGTGACACTTTTGTGCTGCGKGTGTCCGGACTTTTTGTATCAATCATGCTCTCAGTATCCCCATGTTTCACTTTGTCTGCTTTTTCACTTTATCAAAGTCATGTGACACCATCCGTCACCATACGTTGTCCTGCCCGGCAGGTCTAGGCGCGCCCTTGGTTGCAAAGAATTCGTTTCGTTTCAATCGGGATTCACACTATAACATTTTTCGTGTAGCTGGTTTTTGACATTTTTTCTTGTTCCGGGATTATGAATGTTCGTTTTGACTCAAAACTTTTGAGCTCTTGAAAGGAAAATTAGTTTTTGAGATCATGAAGCGTTTAATTTTCAAGCCAGTGACGCCAAGGCTGTGCCACGGCCGGCTGCGGCATTCTGAAAAGGCTACTTCTGAAATAGGTAGGGTACGGCGGCCTAGCGGCCCTAGTAGTTTCTGAGTAGCTGAGCTTATTTTCGAAAGCTTTACCGAAACGAAGAATGGAAAATGATTTAATGTGAATACTCTAATAGAATGTCTCCAAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>139 136 125 112 78 76 48 46 41 32 27 26 18 17 17 14 10 8 8 7 3 3 3 2 2 2</canonical_bands>
                <polymorphic_bands>139 136 125 112 78 76 48 46 41 32 27 26 18 17 17 14 10 9 8 8 3 3 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAATCAATTTTACTACCAACAC</pcr_primer_p1>
		<pcr_primer_p2>GAAAAAGCAGACAAAGTGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAATCAATTTTACTACCAACACACCCAGTTTTGTTATAGTTCGTTTTTTTTTCGGGAGGGTCCCGCTTGTAGTAAACCATCTGCAGCCTCGTAGAAATAGAGACTCAGACGACATGAAACAGTTTTGCGTTGTAACAGAGGAAGAGAGCATCAGACCCACGCTAGTGACACTTTTGTGCTGCGTGTGTCCGGACTTTTTGTATCAATCATGCTCTCAGTATCCCCATGTTTCACTTTGTCTGCTTTTTC</canonical_amplicon>
		<polymorphic_amplicon>CCAATCAATTTTACTACCAACACACCCAGTTTTGTTATAGTTCGTTTTTTTTTCGGGAGGGTCCCGCTTGTAGTAAACCATCTGCAGCCTCGTAGAAATAGAGACTCAGACGACATGAAACAGTTTTGCGTTGTAACAGAGGAAGAGAGCATCAGACCCACGCTAGTGACACTTTTGTGCTGCGKGTGTCCGGACTTTTTGTATCAATCATGCTCTCAGTATCCCCATGTTTCACTTTGTCTGCTTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19600</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>368905</contig_pos>
        <strand>+</strand>
        <context>CTGCGKGTGT[C/T]CGGACTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGAAGAGAGCATCAGACCCACGCTAGTGACACTTTTGTGCTGCGTGTGT</left_flank>
        <right_flank>CGGACTTTTTGTATCAATCATGCTCTCAGTATCCCCATGTTTCACTTTGT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAATAAAATATTTTCCATATATTTTAAAACCAAAGTATTCAGCATTTAGAGACATCATTATCTCTAGAGTGATTGATAGCAGAAAATCAATCAAGGCAATTTAAAATTTCAATTAATCACCCAACCCGACGTCTGCGACTTATCACATACCAGTAAAACTGTTTATGTTTCAACCGTAAACTTTCACTTTCCTCTAGCCATCATCTTCTGAACGTCCACATATTTACCTAACCCAGTAACCCTCTGATGTCCTTGAGACTCCCAGTTGTAAACCATCCAACAGAATGCCGACAGACGGAGAAAGAGTACCAATCAATTTTACTACCAACACACCCAGTTTTGTTATAGTTCGTTTTTTTTTCGGGAGGGTCCCGCTTGTAGTAAACCATCTGCAGCCTCGTAGAAATAGAGACTCAGACGACATGAAACAGTTTTGCGTTGTAACAGAGGAAGAGAGCATCAGACCCACGCTAGTGACACTTTTGTGCTGCGTGTGTCCGGACTTTTTGTATCAATCATGCTCTCAGTATCCCCATGTTTCACTTTGTCTGCTTTTTCACTTTATCAAAGTCATGTGACACCATCCGTCACCATACGTTGTCCTGCCCGGCAGGTCTAGGCGCGCCCTTGGTTGCAAAGAATTCGTTTCGTTTCAATCGGGATTCACACTATAACATTTTTCGTGTAGCTGGTTTTTGACATTTTTTCTTGTTCCGGGATTATGAATGTTCGTTTTGACTCAAAACTTTTGAGCTCTTGAAAGGAAAATTAGTTTTTGAGATCATGAAGCGTTTAATTTTCAAGCCAGTGACGCCAAGGCTGTGCCACGGCCGGCTGCGGCATTCTGAAAAGGCTACTTCTGAAATAGGTAGGGTACGGCGGCCTAGCGGCCCTAGTAGTTTCTGAGTAGCTGAGCTTATTTTCGAAAGCTTTACCGAAACGAAGAATGGAAAATGATTTAATGTGAATACTCTAATAGAATGTCTCCAAACCGTCGG</canonical>
            <polymorphic>CCAAATAAAATATTTTCCATATATTTTAAAACCAAAGTATTCAGCATTTAGAGACATCATTATCTCTAGAGTGATTGATAGCAGAAAATCAATCAAGGCAATTTAAAATTTCAATTAATCACCCAACCCGACGTCTGCGACTTATCACATACCAGTAAAACTGTTTATGTTTCAACCGTAAACTTTCACTTTCCTCTAGCCATCATCTTCTGAACGTCCACATATTTACCTAACCCAGTAACCCTCTGATGTCCTTGAGACTCCCAGTTGTAAACCATCCAACAGAATGCCGACAGACGGAGAAAGAGTACCAATCAATTTTACTACCAACACACCCAGTTTTGTTATAGTTCGTTTTTTTTTCGGGAGGGTCCCGCTTGTAGTAAACCATCTGCAGCCTCGTAGAAATAGAGACTCAGACGACATGAAACAGTTTTGCGTTGTAACAGAGGAAGAGAGCATCAGACCCACGCTAGTGACACTTTTGTGCTGCGTGTGTYCGGACTTTTTGTATCAATCATGCTCTCAGTATCCCCATGTTTCACTTTGTCTGCTTTTTCACTTTATCAAAGTCATGTGACACCATCCGTCACCATACGTTGTCCTGCCCGGCAGGTCTAGGCGCGCCCTTGGTTGCAAAGAATTCGTTTCGTTTCAATCGGGATTCACACTATAACATTTTTCGTGTAGCTGGTTTTTGACATTTTTTCTTGTTCCGGGATTATGAATGTTCGTTTTGACTCAAAACTTTTGAGCTCTTGAAAGGAAAATTAGTTTTTGAGATCATGAAGCGTTTAATTTTCAAGCCAGTGACGCCAAGGCTGTGCCACGGCCGGCTGCGGCATTCTGAAAAGGCTACTTCTGAAATAGGTAGGGTACGGCGGCCTAGCGGCCCTAGTAGTTTCTGAGTAGCTGAGCTTATTTTCGAAAGCTTTACCGAAACGAAGAATGGAAAATGATTTAATGTGAATACTCTAATAGAATGTCTCCAAACCGTCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCCGGA</site>
                <isoschizomers>
                    <enzyme>AccIII</enzyme>
                    <enzyme>BseAI</enzyme>
                    <enzyme>BsiMI</enzyme>
                    <enzyme>Bsp13I</enzyme>
                    <enzyme>BspEI</enzyme>
                    <enzyme>BspMII</enzyme>
                    <enzyme>Kpn2I</enzyme>
                    <enzyme>MroI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 167 117 109 107</canonical_bands>
                <polymorphic_bands>609 167 117 107</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>298 215 160 136 98 66 27</canonical_bands>
                <polymorphic_bands>298 296 215 98 66 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAATCAATTTTACTACCAACAC</pcr_primer_p1>
		<pcr_primer_p2>GAAAAAGCAGACAAAGTGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAATCAATTTTACTACCAACACACCCAGTTTTGTTATAGTTCGTTTTTTTTTCGGGAGGGTCCCGCTTGTAGTAAACCATCTGCAGCCTCGTAGAAATAGAGACTCAGACGACATGAAACAGTTTTGCGTTGTAACAGAGGAAGAGAGCATCAGACCCACGCTAGTGACACTTTTGTGCTGCGTGTGTCCGGACTTTTTGTATCAATCATGCTCTCAGTATCCCCATGTTTCACTTTGTCTGCTTTTTC</canonical_amplicon>
		<polymorphic_amplicon>CCAATCAATTTTACTACCAACACACCCAGTTTTGTTATAGTTCGTTTTTTTTTCGGGAGGGTCCCGCTTGTAGTAAACCATCTGCAGCCTCGTAGAAATAGAGACTCAGACGACATGAAACAGTTTTGCGTTGTAACAGAGGAAGAGAGCATCAGACCCACGCTAGTGACACTTTTGTGCTGCGTGTGTYCGGACTTTTTGTATCAATCATGCTCTCAGTATCCCCATGTTTCACTTTGTCTGCTTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19605</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>369202</contig_pos>
        <strand>+</strand>
        <context>TGAAGCGTTT[A/G]ATTTTCAAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTTTTGAGCTCTTGAAAGGAAAATTAGTTTTTGAGATCATGAAGCGTTT</left_flank>
        <right_flank>ATTTTCAAGCCAGTGACGCCAAGGCTGTGCCACGGCCGGCTGCGGCATTC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGAGAAAGAGTACCAATCAATTTTACTACCAACACACCCAGTTTTGTTATAGTTCGTTTTTTTTTCGGGAGGGTCCCGCTTGTAGTAAACCATCTGCAGCCTCGTAGAAATAGAGACTCAGACGACATGAAACAGTTTTGCGTTGTAACAGAGGAAGAGAGCATCAGACCCACGCTAGTGACACTTTTGTGCTGCGTGTGTCCGGACTTTTTGTATCAATCATGCTCTCAGTATCCCCATGTTTCACTTTGTCTGCTTTTTCACTTTATCAAAGTCATGTGACACCATCCGTCACCATACGTTGTCCTGCCCGGCAGGTCTAGGCGCGCCCTTGGTTGCAAAGAATTCGTTTCGTTTCAATCGGGATTCACACTATAACATTTTTCGTGTAGCTGGTTTTTGACATTTTTTCTTGTTCCGGGATTATGAATGTTCGTTTTGACTCAAAACTTTTGAGCTCTTGAAAGGAAAATTAGTTTTTGAGATCATGAAGCGTTTAATTTTCAAGCCAGTGACGCCAAGGCTGTGCCACGGCCGGCTGCGGCATTCTGAAAAGGCTACTTCTGAAATAGGTAGGGTACGGCGGCCTAGCGGCCCTAGTAGTTTCTGAGTAGCTGAGCTTATTTTCGAAAGCTTTACCGAAACGAAGAATGGAAAATGATTTAATGTGAATACTCTAATAGAATGTCTCCAAACCGTCGGCTTTGAGTCAATTTATCTTGGTTCCTGTAACAGATATCAAAAAATGATTAACTGATAAAATAATTGTGATATTATGATAATTTATAAATTCATTGATAGACAATTTGTTAATTAACCACTTCTTGATATCTTTCACAGGAAATGAGATACATGGGCTCAAAGTGTAAAACTAGCGGGGCGGGTGGTGTTCTGTTAGAGTGTTTACGGTACTTTTCAAGCATTCACCACTTCTACATAGAATGAAAACAAAGTAGCCTTAAAATTTAGGTCCGTAATAAACATAAAGTACAATATCTG</canonical>
            <polymorphic>CGGAGAAAGAGTACCAATCAATTTTACTACCAACACACCCAGTTTTGTTATAGTTCGTTTTTTTTTCGGGAGGGTCCCGCTTGTAGTAAACCATCTGCAGCCTCGTAGAAATAGAGACTCAGACGACATGAAACAGTTTTGCGTTGTAACAGAGGAAGAGAGCATCAGACCCACGCTAGTGACACTTTTGTGCTGCGTGTGTCCGGACTTTTTGTATCAATCATGCTCTCAGTATCCCCATGTTTCACTTTGTCTGCTTTTTCACTTTATCAAAGTCATGTGACACCATCCGTCACCATACGTTGTCCTGCCCGGCAGGTCTAGGCGCGCCCTTGGTTGCAAAGAATTCGTTTCGTTTCAATCGGGATTCACACTATAACATTTTTCGTGTAGCTGGTTTTTGACATTTTTTCTTGTTCCGGGATTATGAATGTTCGTTTTGACTCAAAACTTTTGAGCTCTTGAAAGGAAAATTAGTTTTTGAGATCATGAAGCGTTTRATTTTCAAGCCAGTGACGCCAAGGCTGTGCCACGGCCGGCTGCGGCATTCTGAAAAGGCTACTTCTGAAATAGGTAGGGTACGGCGGCCTAGCGGCCCTAGTAGTTTCTGAGTAGCTGAGCTTATTTTCGAAAGCTTTACCGAAACGAAGAATGGAAAATGATTTAATGTGAATACTCTAATAGAATGTCTCCAAACCGTCGGCTTTGAGTCAATTTATCTTGGTTCCTGTAACAGATATCAAAAAATGATTAACTGATAAAATAATTGTGATATTATGATAATTTATAAATTCATTGATAGACAATTTGTTAATTAACCACTTCTTGATATCTTTCACAGGAAATGAGATACATGGGCTCAAAGTGTAAAACTAGCGGGGCGGGTGGTGTTCTGTTAGAGTGTTTACGGTACTTTTCAAGCATTCACCACTTCTACATAGAATGAAAACAAAGTAGCCTTAAAATTTAGGTCCGTAATAAACATAAAGTACAATATCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>498 166 145 87 60 40 4</canonical_bands>
                <polymorphic_bands>664 145 87 60 40 4</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>325 213 151 127 52 37 28 19 17 15 8 8</canonical_bands>
                <polymorphic_bands>325 241 151 127 52 37 19 17 15 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTATGAATGTTCGTTTTGACT</pcr_primer_p1>
		<pcr_primer_p2>CACATTAAATCATTTTCCATTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATTATGAATGTTCGTTTTGACTCAAAACTTTTGAGCTCTTGAAAGGAAAATTAGTTTTTGAGATCATGAAGCGTTTAATTTTCAAGCCAGTGACGCCAAGGCTGTGCCACGGCCGGCTGCGGCATTCTGAAAAGGCTACTTCTGAAATAGGTAGGGTACGGCGGCCTAGCGGCCCTAGTAGTTTCTGAGTAGCTGAGCTTATTTTCGAAAGCTTTACCGAAACGAAGAATGGAAAATGATTTAATGTG</canonical_amplicon>
		<polymorphic_amplicon>GATTATGAATGTTCGTTTTGACTCAAAACTTTTGAGCTCTTGAAAGGAAAATTAGTTTTTGAGATCATGAAGCGTTTRATTTTCAAGCCAGTGACGCCAAGGCTGTGCCACGGCCGGCTGCGGCATTCTGAAAAGGCTACTTCTGAAATAGGTAGGGTACGGCGGCCTAGCGGCCCTAGTAGTTTCTGAGTAGCTGAGCTTATTTTCGAAAGCTTTACCGAAACGAAGAATGGAAAATGATTTAATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19606</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>370641</contig_pos>
        <strand>+</strand>
        <context>GGAATAGCTT[C/T]TCGGCTTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTT</left_flank>
        <right_flank>TCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCACCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAAATGTTTCAATTTCCAAATCACCCAATATACTAGACAAGTAACGAATTCCGATTGCGTACCCAGCTGCAGCCTGAACTTCCTATTGAAATTCGGTACACCTACCATATTCCTCATACATTATTGTTTCCCACATTACAAAAGCCTCATTTCATTACACCCCTGTCGCATTCGACGATCATATTAATTCAAAACGTCCAATCTCAAAGTTCAAGTGGCATCCGCCCCTCGAAAA</canonical>
            <polymorphic>AACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCACCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTYTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAAATGTTTCAATTTCCAAATCACCCAATATACTAGACAAGTAACGAATTCCGATTGCGTACCCAGCTGCAGCCTGAACTTCCTATTGAAATTCGGTACACCTACCATATTCCTCATACATTATTGTTTCCCACATTACAAAAGCCTCATTTCATTACACCCCTGTCGCATTCGACGATCATATTAATTCAAAACGTCCAATCTCAAAGTTCAAGTGGCATCCGCCCCTCGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACAAAATTCCACTTTGTTTCA</pcr_primer_p1>
		<pcr_primer_p2>AAACATAAAAGGAGCATAAATGA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTYTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19607</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>370581</contig_pos>
        <strand>+</strand>
        <context>GTTCCAAGCA[A/C]AGCATATAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCA</left_flank>
        <right_flank>AGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAAAAGAGAAGATACACTCCAAAAAAGGAGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCACCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAAATGTTTCAATTTCCAAATCACCCAATATACTAGACAAGTAACGAATTCCGATTGCGTACCCAGCTGCAGCCTGAACTTCCTATTGAAATTCGGTACACCTACCATATTCCTCATACATTATTGTTTCCCACATTACAAAAGCCTCATTTCATTACACCCCTGTCGCATTCGA</canonical>
            <polymorphic>CGAAAAGAGAAGATACACTCCAAAAAAGGAGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCACCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCAMAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAAATGTTTCAATTTCCAAATCACCCAATATACTAGACAAGTAACGAATTCCGATTGCGTACCCAGCTGCAGCCTGAACTTCCTATTGAAATTCGGTACACCTACCATATTCCTCATACATTATTGTTTCCCACATTACAAAAGCCTCATTTCATTACACCCCTGTCGCATTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>200 83 77 77 65 59 56 56 45 38 35 33 31 26 20 17 16 15 15 14 10 6 2 2 2</canonical_bands>
                <polymorphic_bands>277 83 77 65 59 56 56 45 38 35 33 31 26 20 17 16 15 15 14 10 6 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACAAAATTCCACTTTGTTTCA</pcr_primer_p1>
		<pcr_primer_p2>AAACATAAAAGGAGCATAAATGA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCAMAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19608</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>370555</contig_pos>
        <strand>+</strand>
        <context>GGAAAATCYT[A/G]TTTACCTATG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCT</left_flank>
        <right_flank>TTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGTATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGATACACTCCAAAAAAGGAGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCACCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAAATGTTTCAATTTCCAAATCACCCAATATACTAGACAAGTAACGAATTCCGATTGCGTACCCAGCTGCAGCCTGAACTTCCTATTGAAATTCGGTACACCTACCATATTCCTCATACATTATTGTTTCCCACATTACAAAAGCCTCA</canonical>
            <polymorphic>GGGTATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGATACACTCCAAAAAAGGAGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCACCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTRTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAAATGTTTCAATTTCCAAATCACCCAATATACTAGACAAGTAACGAATTCCGATTGCGTACCCAGCTGCAGCCTGAACTTCCTATTGAAATTCGGTACACCTACCATATTCCTCATACATTATTGTTTCCCACATTACAAAAGCCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>405 219 132 97 96 51</canonical_bands>
                <polymorphic_bands>405 316 132 96 51</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACAAAATTCCACTTTGTTTCA</pcr_primer_p1>
		<pcr_primer_p2>AAACATAAAAGGAGCATAAATGA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTRTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19609</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>370553</contig_pos>
        <strand>+</strand>
        <context>TAGGAAAATC[C/T]TRTTTACCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATC</left_flank>
        <right_flank>TGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGGTATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGATACACTCCAAAAAAGGAGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCACCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAAATGTTTCAATTTCCAAATCACCCAATATACTAGACAAGTAACGAATTCCGATTGCGTACCCAGCTGCAGCCTGAACTTCCTATTGAAATTCGGTACACCTACCATATTCCTCATACATTATTGTTTCCCACATTACAAAAGCCT</canonical>
            <polymorphic>CTGGGTATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGATACACTCCAAAAAAGGAGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCACCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCYTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAAATGTTTCAATTTCCAAATCACCCAATATACTAGACAAGTAACGAATTCCGATTGCGTACCCAGCTGCAGCCTGAACTTCCTATTGAAATTCGGTACACCTACCATATTCCTCATACATTATTGTTTCCCACATTACAAAAGCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACAAAATTCCACTTTGTTTCA</pcr_primer_p1>
		<pcr_primer_p2>AAACATAAAAGGAGCATAAATGA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCYTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19610</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>370520</contig_pos>
        <strand>+</strand>
        <context>CTAGAAATTT[G/T]TTGTAGAACC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTT</left_flank>
        <right_flank>TTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTTGAATGCTTGTAATTGGAAGTTAAATGCACTGGGTATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGATACACTCCAAAAAAGGAGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCACCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAAATGTTTCAATTTCCAAATCACCCAATATACTAGACAAGTAACGAATTCCGATTGCGTACCCAGCTGCAGCCTGAACTTCCTATTGAAATTCGGTACACCTACCATATTCCT</canonical>
            <polymorphic>CACTTGAATGCTTGTAATTGGAAGTTAAATGCACTGGGTATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGATACACTCCAAAAAAGGAGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCACCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTKTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAAATGTTTCAATTTCCAAATCACCCAATATACTAGACAAGTAACGAATTCCGATTGCGTACCCAGCTGCAGCCTGAACTTCCTATTGAAATTCGGTACACCTACCATATTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATGAAAAGTTTGCAAATACA</pcr_primer_p1>
		<pcr_primer_p2>AAAGGAGCATAAATGAAAGTACC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTT</canonical_amplicon>
		<polymorphic_amplicon>GAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTKTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19611</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>370455</contig_pos>
        <strand>+</strand>
        <context>CCAATTTKCC[A/T]TGGTAGACGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCC</left_flank>
        <right_flank>TGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCACCACATTCCCACTCTTCCAATACCACTTTATGCCCGATTTCATACACTTGTCCATGAAATTTCACTTGAATGCTTGTAATTGGAAGTTAAATGCACTGGGTATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGATACACTCCAAAAAAGGAGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCACCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAAATGTTTCAATTTCCAAATCACCCAATATACTAGACAAGTAACGAAT</canonical>
            <polymorphic>CCACCACATTCCCACTCTTCCAATACCACTTTATGCCCGATTTCATACACTTGTCCATGAAATTTCACTTGAATGCTTGTAATTGGAAGTTAAATGCACTGGGTATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGATACACTCCAAAAAAGGAGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCACCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCWTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAAATGTTTCAATTTCCAAATCACCCAATATACTAGACAAGTAACGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCAGCCAACTCTAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCCTAACCATATAAGAAGGTTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGA</canonical_amplicon>
		<polymorphic_amplicon>CCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCWTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19612</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>370452</contig_pos>
        <strand>+</strand>
        <context>GAGCCAATTT[G/T]CCWTGGTAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTT</left_flank>
        <right_flank>CCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCCACCACATTCCCACTCTTCCAATACCACTTTATGCCCGATTTCATACACTTGTCCATGAAATTTCACTTGAATGCTTGTAATTGGAAGTTAAATGCACTGGGTATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGATACACTCCAAAAAAGGAGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCACCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAAATGTTTCAATTTCCAAATCACCCAATATACTAGACAAGTAACG</canonical>
            <polymorphic>TTCCCACCACATTCCCACTCTTCCAATACCACTTTATGCCCGATTTCATACACTTGTCCATGAAATTTCACTTGAATGCTTGTAATTGGAAGTTAAATGCACTGGGTATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGATACACTCCAAAAAAGGAGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCACCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTKCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAAATGTTTCAATTTCCAAATCACCCAATATACTAGACAAGTAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCAGCCAACTCTAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCCTAACCATATAAGAAGGTTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGA</canonical_amplicon>
		<polymorphic_amplicon>CCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTKCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19613</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>370416</contig_pos>
        <strand>+</strand>
        <context>TTGTCTAAAT[C/T]GTTCAGAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAAT</left_flank>
        <right_flank>GTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACCACCCTCTCGTCTCCCCTCTTTCCGTCGTCGTTTCCCACCACATTCCCACTCTTCCAATACCACTTTATGCCCGATTTCATACACTTGTCCATGAAATTTCACTTGAATGCTTGTAATTGGAAGTTAAATGCACTGGGTATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGATACACTCCAAAAAAGGAGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCACCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAAATGTTTC</canonical>
            <polymorphic>CAACCACCCTCTCGTCTCCCCTCTTTCCGTCGTCGTTTCCCACCACATTCCCACTCTTCCAATACCACTTTATGCCCGATTTCATACACTTGTCCATGAAATTTCACTTGAATGCTTGTAATTGGAAGTTAAATGCACTGGGTATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGATACACTCCAAAAAAGGAGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCACCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATYGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAAATGTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>218 153 99 93 91 90 83 51 40 28 24 20 10</canonical_bands>
                <polymorphic_bands>218 153 99 93 91 90 83 75 40 28 20 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATGAATATTCTCCATATACCTCT</pcr_primer_p1>
		<pcr_primer_p2>TGCAAACTTTTCATTCGTCTA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCA</canonical_amplicon>
		<polymorphic_amplicon>TCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATYGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19614</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>370386</contig_pos>
        <strand>+</strand>
        <context>CGAAAGTGTA[C/T]GATGAAAAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTA</left_flank>
        <right_flank>GATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGCATCAATCACGCGTAATGAATTCCGAGCAACCACCCTCTCGTCTCCCCTCTTTCCGTCGTCGTTTCCCACCACATTCCCACTCTTCCAATACCACTTTATGCCCGATTTCATACACTTGTCCATGAAATTTCACTTGAATGCTTGTAATTGGAAGTTAAATGCACTGGGTATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGATACACTCCAAAAAAGGAGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCACCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTC</canonical>
            <polymorphic>CTGCATCAATCACGCGTAATGAATTCCGAGCAACCACCCTCTCGTCTCCCCTCTTTCCGTCGTCGTTTCCCACCACATTCCCACTCTTCCAATACCACTTTATGCCCGATTTCATACACTTGTCCATGAAATTTCACTTGAATGCTTGTAATTGGAAGTTAAATGCACTGGGTATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGATACACTCCAAAAAAGGAGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCACCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTAYGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATGAATATTCTCCATATACCTCT</pcr_primer_p1>
		<pcr_primer_p2>TGCAAACTTTTCATTCGTCTA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCA</canonical_amplicon>
		<polymorphic_amplicon>TCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTAYGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19615</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>370354</contig_pos>
        <strand>+</strand>
        <context>GTATTTTGCA[A/C]TCTCTAGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCA</left_flank>
        <right_flank>TCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTCGTCGGTCTCGACCCCACATGTTTGGTTCTGCATCAATCACGCGTAATGAATTCCGAGCAACCACCCTCTCGTCTCCCCTCTTTCCGTCGTCGTTTCCCACCACATTCCCACTCTTCCAATACCACTTTATGCCCGATTTCATACACTTGTCCATGAAATTTCACTTGAATGCTTGTAATTGGAAGTTAAATGCACTGGGTATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGATACACTCCAAAAAAGGAGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCACCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTG</canonical>
            <polymorphic>TCGTCGTCGGTCTCGACCCCACATGTTTGGTTCTGCATCAATCACGCGTAATGAATTCCGAGCAACCACCCTCTCGTCTCCCCTCTTTCCGTCGTCGTTTCCCACCACATTCCCACTCTTCCAATACCACTTTATGCCCGATTTCATACACTTGTCCATGAAATTTCACTTGAATGCTTGTAATTGGAAGTTAAATGCACTGGGTATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGATACACTCCAAAAAAGGAGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCACCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAMTCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTGAATACGTGTATGTGTGTG</pcr_primer_p1>
		<pcr_primer_p2>ACAATGTTCAACAACTTTTCATC</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCACCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGT</canonical_amplicon>
		<polymorphic_amplicon>TTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCACCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAMTCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19616</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>370302</contig_pos>
        <strand>+</strand>
        <context>GCCGTCCCAC[A/C]CCATTCCCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCAC</left_flank>
        <right_flank>CCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGTTAGTGTAGTAAACTTGTCCGGATGTTCATGAACGACCGATGTTGCTCTCGTCGTCGGTCTCGACCCCACATGTTTGGTTCTGCATCAATCACGCGTAATGAATTCCGAGCAACCACCCTCTCGTCTCCCCTCTTTCCGTCGTCGTTTCCCACCACATTCCCACTCTTCCAATACCACTTTATGCCCGATTTCATACACTTGTCCATGAAATTTCACTTGAATGCTTGTAATTGGAAGTTAAATGCACTGGGTATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGATACACTCCAAAAAAGGAGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCACCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACT</canonical>
            <polymorphic>CTCGTTAGTGTAGTAAACTTGTCCGGATGTTCATGAACGACCGATGTTGCTCTCGTCGTCGGTCTCGACCCCACATGTTTGGTTCTGCATCAATCACGCGTAATGAATTCCGAGCAACCACCCTCTCGTCTCCCCTCTTTCCGTCGTCGTTTCCCACCACATTCCCACTCTTCCAATACCACTTTATGCCCGATTTCATACACTTGTCCATGAAATTTCACTTGAATGCTTGTAATTGGAAGTTAAATGCACTGGGTATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGATACACTCCAAAAAAGGAGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCACCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACMCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTGAATACGTGTATGTGTGTG</pcr_primer_p1>
		<pcr_primer_p2>ACAATGTTCAACAACTTTTCATC</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCACCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGT</canonical_amplicon>
		<polymorphic_amplicon>TTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCACCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACMCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19617</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>370110</contig_pos>
        <strand>+</strand>
        <context>TCCAAAAAAG[C/G]AGTCTGAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGATACACTCCAAAAAAG</left_flank>
        <right_flank>AGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTACTTTTCAAGCATTCACCACTTCTACATAGAATGAAAACAAAGTAGCCTTAAAATTTAGGTCCGTAATAAACATAAAGTACAATATCTGAATAACTCACAAAGTACAATAGTTCCGCTTAAATCAATCAACAACAGCACTCCCATGTTTTCAAAAGTTGCTAATCGCCGTCATCATCGTCTGACTCTTCCTCGTTAGTGTAGTAAACTTGTCCGGATGTTCATGAACGACCGATGTTGCTCTCGTCGTCGGTCTCGACCCCACATGTTTGGTTCTGCATCAATCACGCGTAATGAATTCCGAGCAACCACCCTCTCGTCTCCCCTCTTTCCGTCGTCGTTTCCCACCACATTCCCACTCTTCCAATACCACTTTATGCCCGATTTCATACACTTGTCCATGAAATTTCACTTGAATGCTTGTAATTGGAAGTTAAATGCACTGGGTATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGATACACTCCAAAAAAGGAGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCACCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAAT</canonical>
            <polymorphic>GGTACTTTTCAAGCATTCACCACTTCTACATAGAATGAAAACAAAGTAGCCTTAAAATTTAGGTCCGTAATAAACATAAAGTACAATATCTGAATAACTCACAAAGTACAATAGTTCCGCTTAAATCAATCAACAACAGCACTCCCATGTTTTCAAAAGTTGCTAATCGCCGTCATCATCGTCTGACTCTTCCTCGTTAGTGTAGTAAACTTGTCCGGATGTTCATGAACGACCGATGTTGCTCTCGTCGTCGGTCTCGACCCCACATGTTTGGTTCTGCATCAATCACGCGTAATGAATTCCGAGCAACCACCCTCTCGTCTCCCCTCTTTCCGTCGTCGTTTCCCACCACATTCCCACTCTTCCAATACCACTTTATGCCCGATTTCATACACTTGTCCATGAAATTTCACTTGAATGCTTGTAATTGGAAGTTAAATGCACTGGGTATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGATACACTCCAAAAAAGSAGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCACCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>500 315 185</canonical_bands>
                <polymorphic_bands>815 185</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTTATGCCCGATTTCATAC</pcr_primer_p1>
		<pcr_primer_p2>GTGAGGAGCATCATTTGAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTTATGCCCGATTTCATACACTTGTCCATGAAATTTCACTTGAATGCTTGTAATTGGAAGTTAAATGCACTGGGTATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGATACACTCCAAAAAAGGAGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCAC</canonical_amplicon>
		<polymorphic_amplicon>ACTTTATGCCCGATTTCATACACTTGTCCATGAAATTTCACTTGAATGCTTGTAATTGGAAGTTAAATGCACTGGGTATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGATACACTCCAAAAAAGSAGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19618</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>370095</contig_pos>
        <strand>+</strand>
        <context>AAAGAGAAGA[C/T]ACACTCCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAATGCACTGGGTATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGA</left_flank>
        <right_flank>ACACTCCAAAAAAGGAGTCTGAAATATCGAAATTCGTGTAGAGATTAACG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTAGAGTGTTTACGGTACTTTTCAAGCATTCACCACTTCTACATAGAATGAAAACAAAGTAGCCTTAAAATTTAGGTCCGTAATAAACATAAAGTACAATATCTGAATAACTCACAAAGTACAATAGTTCCGCTTAAATCAATCAACAACAGCACTCCCATGTTTTCAAAAGTTGCTAATCGCCGTCATCATCGTCTGACTCTTCCTCGTTAGTGTAGTAAACTTGTCCGGATGTTCATGAACGACCGATGTTGCTCTCGTCGTCGGTCTCGACCCCACATGTTTGGTTCTGCATCAATCACGCGTAATGAATTCCGAGCAACCACCCTCTCGTCTCCCCTCTTTCCGTCGTCGTTTCCCACCACATTCCCACTCTTCCAATACCACTTTATGCCCGATTTCATACACTTGTCCATGAAATTTCACTTGAATGCTTGTAATTGGAAGTTAAATGCACTGGGTATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGATACACTCCAAAAAAGGAGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCACCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACG</canonical>
            <polymorphic>TGTTAGAGTGTTTACGGTACTTTTCAAGCATTCACCACTTCTACATAGAATGAAAACAAAGTAGCCTTAAAATTTAGGTCCGTAATAAACATAAAGTACAATATCTGAATAACTCACAAAGTACAATAGTTCCGCTTAAATCAATCAACAACAGCACTCCCATGTTTTCAAAAGTTGCTAATCGCCGTCATCATCGTCTGACTCTTCCTCGTTAGTGTAGTAAACTTGTCCGGATGTTCATGAACGACCGATGTTGCTCTCGTCGTCGGTCTCGACCCCACATGTTTGGTTCTGCATCAATCACGCGTAATGAATTCCGAGCAACCACCCTCTCGTCTCCCCTCTTTCCGTCGTCGTTTCCCACCACATTCCCACTCTTCCAATACCACTTTATGCCCGATTTCATACACTTGTCCATGAAATTTCACTTGAATGCTTGTAATTGGAAGTTAAATGCACTGGGTATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGAYACACTCCAAAAAAGGAGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCACCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTATGCCCGATTTCATAC</pcr_primer_p1>
		<pcr_primer_p2>GTGAGGAGCATCATTTGAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTTATGCCCGATTTCATACACTTGTCCATGAAATTTCACTTGAATGCTTGTAATTGGAAGTTAAATGCACTGGGTATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGATACACTCCAAAAAAGGAGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCAC</canonical_amplicon>
		<polymorphic_amplicon>ACTTTATGCCCGATTTCATACACTTGTCCATGAAATTTCACTTGAATGCTTGTAATTGGAAGTTAAATGCACTGGGTATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGAYACACTCCAAAAAAGGAGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19619</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>370054</contig_pos>
        <strand>+</strand>
        <context>GTTAAATGCA[C/T]TGGGTATCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTTGTCCATGAAATTTCACTTGAATGCTTGTAATTGGAAGTTAAATGCA</left_flank>
        <right_flank>TGGGTATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGATACACTCCAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGGGCTCAAAGTGTAAAACTAGCGGGGCGGGTGGTGTTCTGTTAGAGTGTTTACGGTACTTTTCAAGCATTCACCACTTCTACATAGAATGAAAACAAAGTAGCCTTAAAATTTAGGTCCGTAATAAACATAAAGTACAATATCTGAATAACTCACAAAGTACAATAGTTCCGCTTAAATCAATCAACAACAGCACTCCCATGTTTTCAAAAGTTGCTAATCGCCGTCATCATCGTCTGACTCTTCCTCGTTAGTGTAGTAAACTTGTCCGGATGTTCATGAACGACCGATGTTGCTCTCGTCGTCGGTCTCGACCCCACATGTTTGGTTCTGCATCAATCACGCGTAATGAATTCCGAGCAACCACCCTCTCGTCTCCCCTCTTTCCGTCGTCGTTTCCCACCACATTCCCACTCTTCCAATACCACTTTATGCCCGATTTCATACACTTGTCCATGAAATTTCACTTGAATGCTTGTAATTGGAAGTTAAATGCACTGGGTATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGATACACTCCAAAAAAGGAGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCACCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCT</canonical>
            <polymorphic>CATGGGCTCAAAGTGTAAAACTAGCGGGGCGGGTGGTGTTCTGTTAGAGTGTTTACGGTACTTTTCAAGCATTCACCACTTCTACATAGAATGAAAACAAAGTAGCCTTAAAATTTAGGTCCGTAATAAACATAAAGTACAATATCTGAATAACTCACAAAGTACAATAGTTCCGCTTAAATCAATCAACAACAGCACTCCCATGTTTTCAAAAGTTGCTAATCGCCGTCATCATCGTCTGACTCTTCCTCGTTAGTGTAGTAAACTTGTCCGGATGTTCATGAACGACCGATGTTGCTCTCGTCGTCGGTCTCGACCCCACATGTTTGGTTCTGCATCAATCACGCGTAATGAATTCCGAGCAACCACCCTCTCGTCTCCCCTCTTTCCGTCGTCGTTTCCCACCACATTCCCACTCTTCCAATACCACTTTATGCCCGATTTCATACACTTGTCCATGAAATTTCACTTGAATGCTTGTAATTGGAAGTTAAATGCAYTGGGTATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGATACACTCCAAAAAAGGAGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCACCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>83 79 65 63 61 56 51 45 45 40 38 36 35 31 31 24 24 23 21 20 18 15 15 15 14 13 10 8 6 3 3 3 2 2 2</canonical_bands>
                <polymorphic_bands>83 79 76 65 63 61 56 51 45 40 38 36 35 31 24 24 23 21 20 18 15 15 15 14 13 10 8 6 3 3 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTTATGCCCGATTTCATAC</pcr_primer_p1>
		<pcr_primer_p2>GTGAGGAGCATCATTTGAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTTATGCCCGATTTCATACACTTGTCCATGAAATTTCACTTGAATGCTTGTAATTGGAAGTTAAATGCACTGGGTATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGATACACTCCAAAAAAGGAGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCAC</canonical_amplicon>
		<polymorphic_amplicon>ACTTTATGCCCGATTTCATACACTTGTCCATGAAATTTCACTTGAATGCTTGTAATTGGAAGTTAAATGCAYTGGGTATCAAACTGACCCCCCGCCAACCGAAAAGAGAAGATACACTCCAAAAAAGGAGTCTGAAATATCGAAATTCGTGTAGAGATTAACGGTGTGTCTTCTGAATACGTGTATGTGTGTGGGTCGCGAGGCGTCGTCCTCTCGCCAGAGTATGAATTATTCAAATGATGCTCCTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19620</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>371217</contig_pos>
        <strand>+</strand>
        <context>CCCCAAAAAA[A/C]TTTTTTCTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTTCCCACGACTAAGGGCACCTACAAAGTGCATATTTGGCCCCAAAAAA</left_flank>
        <right_flank>TTTTTTCTCGACGCGCGCTCCAAACACCCGCCGACACTTTTTTCCGAACC</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAAATGTTTCAATTTCCAAATCACCCAATATACTAGACAAGTAACGAATTCCGATTGCGTACCCAGCTGCAGCCTGAACTTCCTATTGAAATTCGGTACACCTACCATATTCCTCATACATTATTGTTTCCCACATTACAAAAGCCTCATTTCATTACACCCCTGTCGCATTCGACGATCATATTAATTCAAAACGTCCAATCTCAAAGTTCAAGTGGCATCCGCCCCTCGAAAAACCATAATCCTTACCATCGTCGCCAAGTTCCCACGACTAAGGGCACCTACAAAGTGCATATTTGGCCCCAAAAAAATTTTTTCTCGACGCGCGCTCCAAACACCCGCCGACACTTTTTTCCGAACCATCAAAATGGGTTGGGTTTTGGTCAATGTTCTCAGCTAGTAAAAACGCCTGAAAGGGTACCGCGCCGGCATATCGTGTCCCATCTCTTGACCACACCCTGACACGCTTTCATGAATTTCATTTCTTTTGTGTGAAATTCAGAATCTATCATCTGAATCTATTCAAACACCTTCTTCCTTCCCCTCGCCGCCATCCTCGCTCCCGCCTGTTTGAACGCCATTCGAGTGTGTGTTAATTTCAAAACGGTTACCTTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCCGTACGCGCTCTTGGATCAGTAGTACAGTGTTTGTGTATGCTTACTGTCAGCAGTATGGTTCAACCCAAGCCTACCTCGCGAGACTCTAGAGGAGTTCAATATATTTTGCGCGGGGGACCGACGAGAGTGCTAGGTTATCAGTAG</canonical>
            <polymorphic>TATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAAATGTTTCAATTTCCAAATCACCCAATATACTAGACAAGTAACGAATTCCGATTGCGTACCCAGCTGCAGCCTGAACTTCCTATTGAAATTCGGTACACCTACCATATTCCTCATACATTATTGTTTCCCACATTACAAAAGCCTCATTTCATTACACCCCTGTCGCATTCGACGATCATATTAATTCAAAACGTCCAATCTCAAAGTTCAAGTGGCATCCGCCCCTCGAAAAACCATAATCCTTACCATCGTCGCCAAGTTCCCACGACTAAGGGCACCTACAAAGTGCATATTTGGCCCCAAAAAAMTTTTTTCTCGACGCGCGCTCCAAACACCCGCCGACACTTTTTTCCGAACCATCAAAATGGGTTGGGTTTTGGTCAATGTTCTCAGCTAGTAAAAACGCCTGAAAGGGTACCGCGCCGGCATATCGTGTCCCATCTCTTGACCACACCCTGACACGCTTTCATGAATTTCATTTCTTTTGTGTGAAATTCAGAATCTATCATCTGAATCTATTCAAACACCTTCTTCCTTCCCCTCGCCGCCATCCTCGCTCCCGCCTGTTTGAACGCCATTCGAGTGTGTGTTAATTTCAAAACGGTTACCTTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCCGTACGCGCTCTTGGATCAGTAGTACAGTGTTTGTGTATGCTTACTGTCAGCAGTATGGTTCAACCCAAGCCTACCTCGCGAGACTCTAGAGGAGTTCAATATATTTTGCGCGGGGGACCGACGAGAGTGCTAGGTTATCAGTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>316 235 220 165 43 21</canonical_bands>
                <polymorphic_bands>385 316 235 43 21</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>217 165 124 108 99 96 91 43 36 21</canonical_bands>
                <polymorphic_bands>289 217 108 99 96 91 43 36 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGACGATCATATTAATTCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CGTTTTTACTAGCTGAGAACATT</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>CGACGATCATATTAATTCAAAACGTCCAATCTCAAAGTTCAAGTGGCATCCGCCCCTCGAAAAACCATAATCCTTACCATCGTCGCCAAGTTCCCACGACTAAGGGCACCTACAAAGTGCATATTTGGCCCCAAAAAAATTTTTTCTCGACGCGCGCTCCAAACACCCGCCGACACTTTTTTCCGAACCATCAAAATGGGTTGGGTTTTGGTCAATGTTCTCAGCTAGTAAAAACG</canonical_amplicon>
		<polymorphic_amplicon>CGACGATCATATTAATTCAAAACGTCCAATCTCAAAGTTCAAGTGGCATCCGCCCCTCGAAAAACCATAATCCTTACCATCGTCGCCAAGTTCCCACGACTAAGGGCACCTACAAAGTGCATATTTGGCCCCAAAAAAMTTTTTTCTCGACGCGCGCTCCAAACACCCGCCGACACTTTTTTCCGAACCATCAAAATGGGTTGGGTTTTGGTCAATGTTCTCAGCTAGTAAAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19621</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>371025</contig_pos>
        <strand>+</strand>
        <context>ATTCCTCATA[A/C]ATTATTGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCAGCCTGAACTTCCTATTGAAATTCGGTACACCTACCATATTCCTCATA</left_flank>
        <right_flank>ATTATTGTTTCCCACATTACAAAAGCCTCATTTCATTACACCCCTGTCGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAAATGTTTCAATTTCCAAATCACCCAATATACTAGACAAGTAACGAATTCCGATTGCGTACCCAGCTGCAGCCTGAACTTCCTATTGAAATTCGGTACACCTACCATATTCCTCATACATTATTGTTTCCCACATTACAAAAGCCTCATTTCATTACACCCCTGTCGCATTCGACGATCATATTAATTCAAAACGTCCAATCTCAAAGTTCAAGTGGCATCCGCCCCTCGAAAAACCATAATCCTTACCATCGTCGCCAAGTTCCCACGACTAAGGGCACCTACAAAGTGCATATTTGGCCCCAAAAAAATTTTTTCTCGACGCGCGCTCCAAACACCCGCCGACACTTTTTTCCGAACCATCAAAATGGGTTGGGTTTTGGTCAATGTTCTCAGCTAGTAAAAACGCCTGAAAGGGTACCGCGCCGGCATATCGTGTCCCATCTCTTGACCACACCCTGACACGCTTTCATGAATTTCATTTCTTTTGTGTGAAATTCAGAATCTATCATCTGAATCTATTCAAACACCTTCTTCCTTCCCCTCGCCGCCATCCTCGCTCCCGCCTGTTTGAACGCCATTCGAGTGTGTGTTAATTTCAAAACGGTTACCTTCTGTC</canonical>
            <polymorphic>GAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAAATGTTTCAATTTCCAAATCACCCAATATACTAGACAAGTAACGAATTCCGATTGCGTACCCAGCTGCAGCCTGAACTTCCTATTGAAATTCGGTACACCTACCATATTCCTCATAMATTATTGTTTCCCACATTACAAAAGCCTCATTTCATTACACCCCTGTCGCATTCGACGATCATATTAATTCAAAACGTCCAATCTCAAAGTTCAAGTGGCATCCGCCCCTCGAAAAACCATAATCCTTACCATCGTCGCCAAGTTCCCACGACTAAGGGCACCTACAAAGTGCATATTTGGCCCCAAAAAAATTTTTTCTCGACGCGCGCTCCAAACACCCGCCGACACTTTTTTCCGAACCATCAAAATGGGTTGGGTTTTGGTCAATGTTCTCAGCTAGTAAAAACGCCTGAAAGGGTACCGCGCCGGCATATCGTGTCCCATCTCTTGACCACACCCTGACACGCTTTCATGAATTTCATTTCTTTTGTGTGAAATTCAGAATCTATCATCTGAATCTATTCAAACACCTTCTTCCTTCCCCTCGCCGCCATCCTCGCTCCCGCCTGTTTGAACGCCATTCGAGTGTGTGTTAATTTCAAAACGGTTACCTTCTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCCTTCTGTTAGTGTTTACTT</pcr_primer_p1>
		<pcr_primer_p2>TGGACGTTTTGAATTAATATGAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAAATGTTTCAATTTCCAAATCACCCAATATACTAGACAAGTAACGAATTCCGATTGCGTACCCAGCTGCAGCCTGAACTTCCTATTGAAATTCGGTACACCTACCATATTCCTCATACATTATTGTTTCCCACATTACAAAAGCCTCATTTCATTACACCCCTGTCGCATTCGACGATCATATTAATTCAAAACGTCCA</canonical_amplicon>
		<polymorphic_amplicon>GGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAAATGTTTCAATTTCCAAATCACCCAATATACTAGACAAGTAACGAATTCCGATTGCGTACCCAGCTGCAGCCTGAACTTCCTATTGAAATTCGGTACACCTACCATATTCCTCATAMATTATTGTTTCCCACATTACAAAAGCCTCATTTCATTACACCCCTGTCGCATTCGACGATCATATTAATTCAAAACGTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19622</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>370936</contig_pos>
        <strand>+</strand>
        <context>ATCACCCAAT[A/T]TACTAGACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCATTTGGAGTATTTTAGGTTGAAATGTTTCAATTTCCAAATCACCCAAT</left_flank>
        <right_flank>TACTAGACAAGTAACGAATTCCGATTGCGTACCCAGCTGCAGCCTGAACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAAATGTTTCAATTTCCAAATCACCCAATATACTAGACAAGTAACGAATTCCGATTGCGTACCCAGCTGCAGCCTGAACTTCCTATTGAAATTCGGTACACCTACCATATTCCTCATACATTATTGTTTCCCACATTACAAAAGCCTCATTTCATTACACCCCTGTCGCATTCGACGATCATATTAATTCAAAACGTCCAATCTCAAAGTTCAAGTGGCATCCGCCCCTCGAAAAACCATAATCCTTACCATCGTCGCCAAGTTCCCACGACTAAGGGCACCTACAAAGTGCATATTTGGCCCCAAAAAAATTTTTTCTCGACGCGCGCTCCAAACACCCGCCGACACTTTTTTCCGAACCATCAAAATGGGTTGGGTTTTGGTCAATGTTCTCAGCTAGTAAAAACGCCTGAAAGGGTACCGCGCCGGCATATCGTGTCCCATCTCTTGACCACACCCTGACACGCTTTCATGAATTTCATTTCTTTTGTGTGAAATTCAGAATCTATCATCTGAATCTATTCAAACAC</canonical>
            <polymorphic>AATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAAATGTTTCAATTTCCAAATCACCCAATWTACTAGACAAGTAACGAATTCCGATTGCGTACCCAGCTGCAGCCTGAACTTCCTATTGAAATTCGGTACACCTACCATATTCCTCATACATTATTGTTTCCCACATTACAAAAGCCTCATTTCATTACACCCCTGTCGCATTCGACGATCATATTAATTCAAAACGTCCAATCTCAAAGTTCAAGTGGCATCCGCCCCTCGAAAAACCATAATCCTTACCATCGTCGCCAAGTTCCCACGACTAAGGGCACCTACAAAGTGCATATTTGGCCCCAAAAAAATTTTTTCTCGACGCGCGCTCCAAACACCCGCCGACACTTTTTTCCGAACCATCAAAATGGGTTGGGTTTTGGTCAATGTTCTCAGCTAGTAAAAACGCCTGAAAGGGTACCGCGCCGGCATATCGTGTCCCATCTCTTGACCACACCCTGACACGCTTTCATGAATTTCATTTCTTTTGTGTGAAATTCAGAATCTATCATCTGAATCTATTCAAACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAAGGATCTCAATTTTTCTC</pcr_primer_p1>
		<pcr_primer_p2>TAATGAAATGAGGCTTTTGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAAATGTTTCAATTTCCAAATCACCCAATATACTAGACAAGTAACGAATTCCGATTGCGTACCCAGCTGCAGCCTGAACTTCCTATTGAAATTCGGTACACCTACCATATTCCTCATACATTATTGTTTCCCACATTACAAAAGCCTCATTTCATTA</canonical_amplicon>
		<polymorphic_amplicon>CTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAAATGTTTCAATTTCCAAATCACCCAATWTACTAGACAAGTAACGAATTCCGATTGCGTACCCAGCTGCAGCCTGAACTTCCTATTGAAATTCGGTACACCTACCATATTCCTCATACATTATTGTTTCCCACATTACAAAAGCCTCATTTCATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19623</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>370838</contig_pos>
        <strand>+</strand>
        <context>TTTTTCTCAA[G/T]TACTTCAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAA</left_flank>
        <right_flank>TACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAAATGTTTCAATTTCCAAATCACCCAATATACTAGACAAGTAACGAATTCCGATTGCGTACCCAGCTGCAGCCTGAACTTCCTATTGAAATTCGGTACACCTACCATATTCCTCATACATTATTGTTTCCCACATTACAAAAGCCTCATTTCATTACACCCCTGTCGCATTCGACGATCATATTAATTCAAAACGTCCAATCTCAAAGTTCAAGTGGCATCCGCCCCTCGAAAAACCATAATCCTTACCATCGTCGCCAAGTTCCCACGACTAAGGGCACCTACAAAGTGCATATTTGGCCCCAAAAAAATTTTTTCTCGACGCGCGCTCCAAACACCCGCCGACACTTTTTTCCGAACCATCAAAATGGGTTGGGTTTTGGTCAATGTTCTCAGCTAGTAAAAACGCCTGAAAGGGTACCGCGCCGGCAT</canonical>
            <polymorphic>CTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAKTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAAATGTTTCAATTTCCAAATCACCCAATATACTAGACAAGTAACGAATTCCGATTGCGTACCCAGCTGCAGCCTGAACTTCCTATTGAAATTCGGTACACCTACCATATTCCTCATACATTATTGTTTCCCACATTACAAAAGCCTCATTTCATTACACCCCTGTCGCATTCGACGATCATATTAATTCAAAACGTCCAATCTCAAAGTTCAAGTGGCATCCGCCCCTCGAAAAACCATAATCCTTACCATCGTCGCCAAGTTCCCACGACTAAGGGCACCTACAAAGTGCATATTTGGCCCCAAAAAAATTTTTTCTCGACGCGCGCTCCAAACACCCGCCGACACTTTTTTCCGAACCATCAAAATGGGTTGGGTTTTGGTCAATGTTCTCAGCTAGTAAAAACGCCTGAAAGGGTACCGCGCCGGCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGTACT</site>
                <isoschizomers>
                    <enzyme>Acc113I</enzyme>
                    <enzyme>ScaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>322 285 127 74 73 69 37 13</canonical_bands>
                <polymorphic_bands>322 285 196 74 73 37 13</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>505 288 188 19</canonical_bands>
                <polymorphic_bands>524 288 188</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTCTTGTTATCCTCGACTTAT</pcr_primer_p1>
		<pcr_primer_p2>TTCAACCTAAAATACTCCAAATG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAA</canonical_amplicon>
		<polymorphic_amplicon>CATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAKTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19624</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>401627</contig_pos>
        <strand>+</strand>
        <context>TCGAATTTTT[A/T]AACTCCCCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAAACGGTCGTTTGATGTGTCTTCTTGGTCAAAGTATCATCGAATTTTT</left_flank>
        <right_flank>AACTCCCCTGAATCATCATTTCTTTGATAAACAAAATTTTGCAAGCGTAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTGTCTCTCCGGCTCTCGACACTCTCCATTTTTCGTTTTTTTTGTTTCCACGTGTCAATATTAGCTGAGCCCAAAAGAAAGTGAGAGGGGAACTAAAACAAGACATTAGATAGCAAGAGAGTTTCTATATTTTATATATTTACTGGTTGTTTGAAAAAAAGTTAAAGTTCAACCTTATCCAGTATGTTTGCCTCCTACTTATGTTGAACCCCGTGCCTTTTTTCTTCTTCTCATTTTTTCTCTCCTATACCATCAAGGTCAATCTCCCTCATCTTTTTTCCGCGTGAGGATCTTCCGCTCCCGACTGTCCGACCTCTGCGCGTCTTCTCAAATCCCATTCATTCCCTTCGGGCCGTTCAAAGAAGACCTTCAGTCAATTTCTGTAGTAGTCCTTCTCCCTGAATACTAGGTCACTTCAATCTTTTCTTTTTTTATGTCGTTCTTCTGAGAAACGGTCGTTTGATGTGTCTTCTTGGTCAAAGTATCATCGAATTTTTAAACTCCCCTGAATCATCATTTCTTTGATAAACAAAATTTTGCAAGCGTAGAGCAAGAAGGTAACATTCCTATGAATTTAGCATATTTAGCATATCTATTGTGTATGTGTGCATTTTCTCAAATTTGCATATCTTCTGCCATCCTTTGAATTTTCTTTCATCACCATTGTTATGCAACGAAACACCTCCCATTTCTTCCAGAATCTTTTCCAGAATAATCTCTTCTTCTCAATCATCACTTTTTGTTGTTATCAGTTTTCTATTTCACCAGCTCTTGTGAACCATGCACCAATAAATATTTGCCGGCACGGCCTAATGGCCTTATCGGATAGAAGAGAGGGGTTTCTTACTCTCATGACTCGTCTCCTCGAGACTTTCACTTTTACCTATGGAATCACAATCATCACAATTCTACTTTGGTCTTCGTACCTCTCTTATCAGTGAAGGAAGAAAAGGGCTTTCCGTGAAATGGGCGGGGATGAGACCTTTGGTACCTAGGAT</canonical>
            <polymorphic>CTGTGTCTCTCCGGCTCTCGACACTCTCCATTTTTCGTTTTTTTTGTTTCCACGTGTCAATATTAGCTGAGCCCAAAAGAAAGTGAGAGGGGAACTAAAACAAGACATTAGATAGCAAGAGAGTTTCTATATTTTATATATTTACTGGTTGTTTGAAAAAAAGTTAAAGTTCAACCTTATCCAGTATGTTTGCCTCCTACTTATGTTGAACCCCGTGCCTTTTTTCTTCTTCTCATTTTTTCTCTCCTATACCATCAAGGTCAATCTCCCTCATCTTTTTTCCGCGTGAGGATCTTCCGCTCCCGACTGTCCGACCTCTGCGCGTCTTCTCAAATCCCATTCATTCCCTTCGGGCCGTTCAAAGAAGACCTTCAGTCAATTTCTGTAGTAGTCCTTCTCCCTGAATACTAGGTCACTTCAATCTTTTCTTTTTTTATGTCGTTCTTCTGAGAAACGGTCGTTTGATGTGTCTTCTTGGTCAAAGTATCATCGAATTTTTWAACTCCCCTGAATCATCATTTCTTTGATAAACAAAATTTTGCAAGCGTAGAGCAAGAAGGTAACATTCCTATGAATTTAGCATATTTAGCATATCTATTGTGTATGTGTGCATTTTCTCAAATTTGCATATCTTCTGCCATCCTTTGAATTTTCTTTCATCACCATTGTTATGCAACGAAACACCTCCCATTTCTTCCAGAATCTTTTCCAGAATAATCTCTTCTTCTCAATCATCACTTTTTGTTGTTATCAGTTTTCTATTTCACCAGCTCTTGTGAACCATGCACCAATAAATATTTGCCGGCACGGCCTAATGGCCTTATCGGATAGAAGAGAGGGGTTTCTTACTCTCATGACTCGTCTCCTCGAGACTTTCACTTTTACCTATGGAATCACAATCATCACAATTCTACTTTGGTCTTCGTACCTCTCTTATCAGTGAAGGAAGAAAAGGGCTTTCCGTGAAATGGGCGGGGATGAGACCTTTGGTACCTAGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 334 164</canonical_bands>
                <polymorphic_bands>836 164</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTAGTAGTCCTTCTCCCTGAAT</pcr_primer_p1>
		<pcr_primer_p2>AGATATGCAAATTTGAGAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTAGTAGTCCTTCTCCCTGAATACTAGGTCACTTCAATCTTTTCTTTTTTTATGTCGTTCTTCTGAGAAACGGTCGTTTGATGTGTCTTCTTGGTCAAAGTATCATCGAATTTTTAAACTCCCCTGAATCATCATTTCTTTGATAAACAAAATTTTGCAAGCGTAGAGCAAGAAGGTAACATTCCTATGAATTTAGCATATTTAGCATATCTATTGTGTATGTGTGCATTTTCTCAAATTTGCATATCT</canonical_amplicon>
		<polymorphic_amplicon>TGTAGTAGTCCTTCTCCCTGAATACTAGGTCACTTCAATCTTTTCTTTTTTTATGTCGTTCTTCTGAGAAACGGTCGTTTGATGTGTCTTCTTGGTCAAAGTATCATCGAATTTTTWAACTCCCCTGAATCATCATTTCTTTGATAAACAAAATTTTGCAAGCGTAGAGCAAGAAGGTAACATTCCTATGAATTTAGCATATTTAGCATATCTATTGTGTATGTGTGCATTTTCTCAAATTTGCATATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19625</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>401665</contig_pos>
        <strand>+</strand>
        <context>TAAACAAAAT[G/T]TTGCAAGCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATCGAATTTTTAAACTCCCCTGAATCATCATTTCTTTGATAAACAAAAT</left_flank>
        <right_flank>TTGCAAGCGTAGAGCAAGAAGGTAACATTCCTATGAATTTAGCATATTTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTTGTTTCCACGTGTCAATATTAGCTGAGCCCAAAAGAAAGTGAGAGGGGAACTAAAACAAGACATTAGATAGCAAGAGAGTTTCTATATTTTATATATTTACTGGTTGTTTGAAAAAAAGTTAAAGTTCAACCTTATCCAGTATGTTTGCCTCCTACTTATGTTGAACCCCGTGCCTTTTTTCTTCTTCTCATTTTTTCTCTCCTATACCATCAAGGTCAATCTCCCTCATCTTTTTTCCGCGTGAGGATCTTCCGCTCCCGACTGTCCGACCTCTGCGCGTCTTCTCAAATCCCATTCATTCCCTTCGGGCCGTTCAAAGAAGACCTTCAGTCAATTTCTGTAGTAGTCCTTCTCCCTGAATACTAGGTCACTTCAATCTTTTCTTTTTTTATGTCGTTCTTCTGAGAAACGGTCGTTTGATGTGTCTTCTTGGTCAAAGTATCATCGAATTTTTAAACTCCCCTGAATCATCATTTCTTTGATAAACAAAATTTTGCAAGCGTAGAGCAAGAAGGTAACATTCCTATGAATTTAGCATATTTAGCATATCTATTGTGTATGTGTGCATTTTCTCAAATTTGCATATCTTCTGCCATCCTTTGAATTTTCTTTCATCACCATTGTTATGCAACGAAACACCTCCCATTTCTTCCAGAATCTTTTCCAGAATAATCTCTTCTTCTCAATCATCACTTTTTGTTGTTATCAGTTTTCTATTTCACCAGCTCTTGTGAACCATGCACCAATAAATATTTGCCGGCACGGCCTAATGGCCTTATCGGATAGAAGAGAGGGGTTTCTTACTCTCATGACTCGTCTCCTCGAGACTTTCACTTTTACCTATGGAATCACAATCATCACAATTCTACTTTGGTCTTCGTACCTCTCTTATCAGTGAAGGAAGAAAAGGGCTTTCCGTGAAATGGGCGGGGATGAGACCTTTGGTACCTAGGATTTTGGAACGTCAGTAAAGGACAAAGTTCCAAAAAGCAT</canonical>
            <polymorphic>TTTTTTTGTTTCCACGTGTCAATATTAGCTGAGCCCAAAAGAAAGTGAGAGGGGAACTAAAACAAGACATTAGATAGCAAGAGAGTTTCTATATTTTATATATTTACTGGTTGTTTGAAAAAAAGTTAAAGTTCAACCTTATCCAGTATGTTTGCCTCCTACTTATGTTGAACCCCGTGCCTTTTTTCTTCTTCTCATTTTTTCTCTCCTATACCATCAAGGTCAATCTCCCTCATCTTTTTTCCGCGTGAGGATCTTCCGCTCCCGACTGTCCGACCTCTGCGCGTCTTCTCAAATCCCATTCATTCCCTTCGGGCCGTTCAAAGAAGACCTTCAGTCAATTTCTGTAGTAGTCCTTCTCCCTGAATACTAGGTCACTTCAATCTTTTCTTTTTTTATGTCGTTCTTCTGAGAAACGGTCGTTTGATGTGTCTTCTTGGTCAAAGTATCATCGAATTTTTAAACTCCCCTGAATCATCATTTCTTTGATAAACAAAATKTTGCAAGCGTAGAGCAAGAAGGTAACATTCCTATGAATTTAGCATATTTAGCATATCTATTGTGTATGTGTGCATTTTCTCAAATTTGCATATCTTCTGCCATCCTTTGAATTTTCTTTCATCACCATTGTTATGCAACGAAACACCTCCCATTTCTTCCAGAATCTTTTCCAGAATAATCTCTTCTTCTCAATCATCACTTTTTGTTGTTATCAGTTTTCTATTTCACCAGCTCTTGTGAACCATGCACCAATAAATATTTGCCGGCACGGCCTAATGGCCTTATCGGATAGAAGAGAGGGGTTTCTTACTCTCATGACTCGTCTCCTCGAGACTTTCACTTTTACCTATGGAATCACAATCATCACAATTCTACTTTGGTCTTCGTACCTCTCTTATCAGTGAAGGAAGAAAAGGGCTTTCCGTGAAATGGGCGGGGATGAGACCTTTGGTACCTAGGATTTTGGAACGTCAGTAAAGGACAAAGTTCCAAAAAGCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>454 391 47 42 39 27</canonical_bands>
                <polymorphic_bands>454 391 81 47 27</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>339 259 132 115 47 42 39 27</canonical_bands>
                <polymorphic_bands>339 259 132 115 81 47 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTAGTAGTCCTTCTCCCTGAAT</pcr_primer_p1>
		<pcr_primer_p2>AGATATGCAAATTTGAGAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTAGTAGTCCTTCTCCCTGAATACTAGGTCACTTCAATCTTTTCTTTTTTTATGTCGTTCTTCTGAGAAACGGTCGTTTGATGTGTCTTCTTGGTCAAAGTATCATCGAATTTTTAAACTCCCCTGAATCATCATTTCTTTGATAAACAAAATTTTGCAAGCGTAGAGCAAGAAGGTAACATTCCTATGAATTTAGCATATTTAGCATATCTATTGTGTATGTGTGCATTTTCTCAAATTTGCATATCT</canonical_amplicon>
		<polymorphic_amplicon>TGTAGTAGTCCTTCTCCCTGAATACTAGGTCACTTCAATCTTTTCTTTTTTTATGTCGTTCTTCTGAGAAACGGTCGTTTGATGTGTCTTCTTGGTCAAAGTATCATCGAATTTTTAAACTCCCCTGAATCATCATTTCTTTGATAAACAAAATKTTGCAAGCGTAGAGCAAGAAGGTAACATTCCTATGAATTTAGCATATTTAGCATATCTATTGTGTATGTGTGCATTTTCTCAAATTTGCATATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19626</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>401695</contig_pos>
        <strand>+</strand>
        <context>AGGTAACATT[C/T]CTATGAATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTCTTTGATAAACAAAATTTTGCAAGCGTAGAGCAAGAAGGTAACATT</left_flank>
        <right_flank>CTATGAATTTAGCATATTTAGCATATCTATTGTGTATGTGTGCATTTTCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCCCAAAAGAAAGTGAGAGGGGAACTAAAACAAGACATTAGATAGCAAGAGAGTTTCTATATTTTATATATTTACTGGTTGTTTGAAAAAAAGTTAAAGTTCAACCTTATCCAGTATGTTTGCCTCCTACTTATGTTGAACCCCGTGCCTTTTTTCTTCTTCTCATTTTTTCTCTCCTATACCATCAAGGTCAATCTCCCTCATCTTTTTTCCGCGTGAGGATCTTCCGCTCCCGACTGTCCGACCTCTGCGCGTCTTCTCAAATCCCATTCATTCCCTTCGGGCCGTTCAAAGAAGACCTTCAGTCAATTTCTGTAGTAGTCCTTCTCCCTGAATACTAGGTCACTTCAATCTTTTCTTTTTTTATGTCGTTCTTCTGAGAAACGGTCGTTTGATGTGTCTTCTTGGTCAAAGTATCATCGAATTTTTAAACTCCCCTGAATCATCATTTCTTTGATAAACAAAATTTTGCAAGCGTAGAGCAAGAAGGTAACATTCCTATGAATTTAGCATATTTAGCATATCTATTGTGTATGTGTGCATTTTCTCAAATTTGCATATCTTCTGCCATCCTTTGAATTTTCTTTCATCACCATTGTTATGCAACGAAACACCTCCCATTTCTTCCAGAATCTTTTCCAGAATAATCTCTTCTTCTCAATCATCACTTTTTGTTGTTATCAGTTTTCTATTTCACCAGCTCTTGTGAACCATGCACCAATAAATATTTGCCGGCACGGCCTAATGGCCTTATCGGATAGAAGAGAGGGGTTTCTTACTCTCATGACTCGTCTCCTCGAGACTTTCACTTTTACCTATGGAATCACAATCATCACAATTCTACTTTGGTCTTCGTACCTCTCTTATCAGTGAAGGAAGAAAAGGGCTTTCCGTGAAATGGGCGGGGATGAGACCTTTGGTACCTAGGATTTTGGAACGTCAGTAAAGGACAAAGTTCCAAAAAGCATAGGATCAGAATTTTAGAATCAATGCTTACT</canonical>
            <polymorphic>GAGCCCAAAAGAAAGTGAGAGGGGAACTAAAACAAGACATTAGATAGCAAGAGAGTTTCTATATTTTATATATTTACTGGTTGTTTGAAAAAAAGTTAAAGTTCAACCTTATCCAGTATGTTTGCCTCCTACTTATGTTGAACCCCGTGCCTTTTTTCTTCTTCTCATTTTTTCTCTCCTATACCATCAAGGTCAATCTCCCTCATCTTTTTTCCGCGTGAGGATCTTCCGCTCCCGACTGTCCGACCTCTGCGCGTCTTCTCAAATCCCATTCATTCCCTTCGGGCCGTTCAAAGAAGACCTTCAGTCAATTTCTGTAGTAGTCCTTCTCCCTGAATACTAGGTCACTTCAATCTTTTCTTTTTTTATGTCGTTCTTCTGAGAAACGGTCGTTTGATGTGTCTTCTTGGTCAAAGTATCATCGAATTTTTAAACTCCCCTGAATCATCATTTCTTTGATAAACAAAATTTTGCAAGCGTAGAGCAAGAAGGTAACATTYCTATGAATTTAGCATATTTAGCATATCTATTGTGTATGTGTGCATTTTCTCAAATTTGCATATCTTCTGCCATCCTTTGAATTTTCTTTCATCACCATTGTTATGCAACGAAACACCTCCCATTTCTTCCAGAATCTTTTCCAGAATAATCTCTTCTTCTCAATCATCACTTTTTGTTGTTATCAGTTTTCTATTTCACCAGCTCTTGTGAACCATGCACCAATAAATATTTGCCGGCACGGCCTAATGGCCTTATCGGATAGAAGAGAGGGGTTTCTTACTCTCATGACTCGTCTCCTCGAGACTTTCACTTTTACCTATGGAATCACAATCATCACAATTCTACTTTGGTCTTCGTACCTCTCTTATCAGTGAAGGAAGAAAAGGGCTTTCCGTGAAATGGGCGGGGATGAGACCTTTGGTACCTAGGATTTTGGAACGTCAGTAAAGGACAAAGTTCCAAAAAGCATAGGATCAGAATTTTAGAATCAATGCTTACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAGTAGTCCTTCTCCCTGAAT</pcr_primer_p1>
		<pcr_primer_p2>AGATATGCAAATTTGAGAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTAGTAGTCCTTCTCCCTGAATACTAGGTCACTTCAATCTTTTCTTTTTTTATGTCGTTCTTCTGAGAAACGGTCGTTTGATGTGTCTTCTTGGTCAAAGTATCATCGAATTTTTAAACTCCCCTGAATCATCATTTCTTTGATAAACAAAATTTTGCAAGCGTAGAGCAAGAAGGTAACATTCCTATGAATTTAGCATATTTAGCATATCTATTGTGTATGTGTGCATTTTCTCAAATTTGCATATCT</canonical_amplicon>
		<polymorphic_amplicon>TGTAGTAGTCCTTCTCCCTGAATACTAGGTCACTTCAATCTTTTCTTTTTTTATGTCGTTCTTCTGAGAAACGGTCGTTTGATGTGTCTTCTTGGTCAAAGTATCATCGAATTTTTAAACTCCCCTGAATCATCATTTCTTTGATAAACAAAATTTTGCAAGCGTAGAGCAAGAAGGTAACATTYCTATGAATTTAGCATATTTAGCATATCTATTGTGTATGTGTGCATTTTCTCAAATTTGCATATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19627</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>401914</contig_pos>
        <strand>+</strand>
        <context>TGAACCATGC[A/G]CCAATAAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTTTTTGTTGTTATCAGTTTTCTATTTCACCAGCTCTTGTGAACCATGC</left_flank>
        <right_flank>CCAATAAATATTTGCCGGCACGGCCTAATGGCCTTATCGGATAGAAGAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGGATCTTCCGCTCCCGACTGTCCGACCTCTGCGCGTCTTCTCAAATCCCATTCATTCCCTTCGGGCCGTTCAAAGAAGACCTTCAGTCAATTTCTGTAGTAGTCCTTCTCCCTGAATACTAGGTCACTTCAATCTTTTCTTTTTTTATGTCGTTCTTCTGAGAAACGGTCGTTTGATGTGTCTTCTTGGTCAAAGTATCATCGAATTTTTAAACTCCCCTGAATCATCATTTCTTTGATAAACAAAATTTTGCAAGCGTAGAGCAAGAAGGTAACATTCCTATGAATTTAGCATATTTAGCATATCTATTGTGTATGTGTGCATTTTCTCAAATTTGCATATCTTCTGCCATCCTTTGAATTTTCTTTCATCACCATTGTTATGCAACGAAACACCTCCCATTTCTTCCAGAATCTTTTCCAGAATAATCTCTTCTTCTCAATCATCACTTTTTGTTGTTATCAGTTTTCTATTTCACCAGCTCTTGTGAACCATGCACCAATAAATATTTGCCGGCACGGCCTAATGGCCTTATCGGATAGAAGAGAGGGGTTTCTTACTCTCATGACTCGTCTCCTCGAGACTTTCACTTTTACCTATGGAATCACAATCATCACAATTCTACTTTGGTCTTCGTACCTCTCTTATCAGTGAAGGAAGAAAAGGGCTTTCCGTGAAATGGGCGGGGATGAGACCTTTGGTACCTAGGATTTTGGAACGTCAGTAAAGGACAAAGTTCCAAAAAGCATAGGATCAGAATTTTAGAATCAATGCTTACTGTTCAGAAATTTATTATTGGATTGACATATTCACAGTGTCTTGAAGTCTAGTTTGAACTTCTAGGAAAAAAGAGATCCTAACAGTAAACAGCCCTCAAAAGCCATTTGCATTTTTTGAGGAGCGAGTAAAAAATTCTCTACCAATTTTGTCCCATCCGTCCCTTCCATTTCAATTCTTTCGATTTGAGATGCAGATCCGATGCAAATGAAATGCACTCC</canonical>
            <polymorphic>GAGGATCTTCCGCTCCCGACTGTCCGACCTCTGCGCGTCTTCTCAAATCCCATTCATTCCCTTCGGGCCGTTCAAAGAAGACCTTCAGTCAATTTCTGTAGTAGTCCTTCTCCCTGAATACTAGGTCACTTCAATCTTTTCTTTTTTTATGTCGTTCTTCTGAGAAACGGTCGTTTGATGTGTCTTCTTGGTCAAAGTATCATCGAATTTTTAAACTCCCCTGAATCATCATTTCTTTGATAAACAAAATTTTGCAAGCGTAGAGCAAGAAGGTAACATTCCTATGAATTTAGCATATTTAGCATATCTATTGTGTATGTGTGCATTTTCTCAAATTTGCATATCTTCTGCCATCCTTTGAATTTTCTTTCATCACCATTGTTATGCAACGAAACACCTCCCATTTCTTCCAGAATCTTTTCCAGAATAATCTCTTCTTCTCAATCATCACTTTTTGTTGTTATCAGTTTTCTATTTCACCAGCTCTTGTGAACCATGCRCCAATAAATATTTGCCGGCACGGCCTAATGGCCTTATCGGATAGAAGAGAGGGGTTTCTTACTCTCATGACTCGTCTCCTCGAGACTTTCACTTTTACCTATGGAATCACAATCATCACAATTCTACTTTGGTCTTCGTACCTCTCTTATCAGTGAAGGAAGAAAAGGGCTTTCCGTGAAATGGGCGGGGATGAGACCTTTGGTACCTAGGATTTTGGAACGTCAGTAAAGGACAAAGTTCCAAAAAGCATAGGATCAGAATTTTAGAATCAATGCTTACTGTTCAGAAATTTATTATTGGATTGACATATTCACAGTGTCTTGAAGTCTAGTTTGAACTTCTAGGAAAAAAGAGATCCTAACAGTAAACAGCCCTCAAAAGCCATTTGCATTTTTTGAGGAGCGAGTAAAAAATTCTCTACCAATTTTGTCCCATCCGTCCCTTCCATTTCAATTCTTTCGATTTGAGATGCAGATCCGATGCAAATGAAATGCACTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>391 254 112 83 69 47 16 11 11 6</canonical_bands>
                <polymorphic_bands>503 254 83 69 47 16 11 11 6</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>177 136 133 128 71 54 54 52 37 29 23 21 20 18 12 9 9 6 5 4 2</canonical_bands>
                <polymorphic_bands>177 136 133 128 71 54 54 52 37 29 29 23 21 18 12 9 6 5 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCAAATTTGCATATCTTCT</pcr_primer_p1>
		<pcr_primer_p2>GACGAGTCATGAGAGTAAGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCAAATTTGCATATCTTCTGCCATCCTTTGAATTTTCTTTCATCACCATTGTTATGCAACGAAACACCTCCCATTTCTTCCAGAATCTTTTCCAGAATAATCTCTTCTTCTCAATCATCACTTTTTGTTGTTATCAGTTTTCTATTTCACCAGCTCTTGTGAACCATGCACCAATAAATATTTGCCGGCACGGCCTAATGGCCTTATCGGATAGAAGAGAGGGGTTTCTTACTCTCATGACTCGTC</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCAAATTTGCATATCTTCTGCCATCCTTTGAATTTTCTTTCATCACCATTGTTATGCAACGAAACACCTCCCATTTCTTCCAGAATCTTTTCCAGAATAATCTCTTCTTCTCAATCATCACTTTTTGTTGTTATCAGTTTTCTATTTCACCAGCTCTTGTGAACCATGCRCCAATAAATATTTGCCGGCACGGCCTAATGGCCTTATCGGATAGAAGAGAGGGGTTTCTTACTCTCATGACTCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19628</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>401933</contig_pos>
        <strand>+</strand>
        <context>TATTTGCCGG[C/T]ACGGCCTRAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCTATTTCACCAGCTCTTGTGAACCATGCACCAATAAATATTTGCCGG</left_flank>
        <right_flank>ACGGCCTAATGGCCTTATCGGATAGAAGAGAGGGGTTTCTTACTCTCATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTCCGACCTCTGCGCGTCTTCTCAAATCCCATTCATTCCCTTCGGGCCGTTCAAAGAAGACCTTCAGTCAATTTCTGTAGTAGTCCTTCTCCCTGAATACTAGGTCACTTCAATCTTTTCTTTTTTTATGTCGTTCTTCTGAGAAACGGTCGTTTGATGTGTCTTCTTGGTCAAAGTATCATCGAATTTTTAAACTCCCCTGAATCATCATTTCTTTGATAAACAAAATTTTGCAAGCGTAGAGCAAGAAGGTAACATTCCTATGAATTTAGCATATTTAGCATATCTATTGTGTATGTGTGCATTTTCTCAAATTTGCATATCTTCTGCCATCCTTTGAATTTTCTTTCATCACCATTGTTATGCAACGAAACACCTCCCATTTCTTCCAGAATCTTTTCCAGAATAATCTCTTCTTCTCAATCATCACTTTTTGTTGTTATCAGTTTTCTATTTCACCAGCTCTTGTGAACCATGCACCAATAAATATTTGCCGGCACGGCCTAATGGCCTTATCGGATAGAAGAGAGGGGTTTCTTACTCTCATGACTCGTCTCCTCGAGACTTTCACTTTTACCTATGGAATCACAATCATCACAATTCTACTTTGGTCTTCGTACCTCTCTTATCAGTGAAGGAAGAAAAGGGCTTTCCGTGAAATGGGCGGGGATGAGACCTTTGGTACCTAGGATTTTGGAACGTCAGTAAAGGACAAAGTTCCAAAAAGCATAGGATCAGAATTTTAGAATCAATGCTTACTGTTCAGAAATTTATTATTGGATTGACATATTCACAGTGTCTTGAAGTCTAGTTTGAACTTCTAGGAAAAAAGAGATCCTAACAGTAAACAGCCCTCAAAAGCCATTTGCATTTTTTGAGGAGCGAGTAAAAAATTCTCTACCAATTTTGTCCCATCCGTCCCTTCCATTTCAATTCTTTCGATTTGAGATGCAGATCCGATGCAAATGAAATGCACTCCCTCAATACGTCTTCTGGAA</canonical>
            <polymorphic>CTGTCCGACCTCTGCGCGTCTTCTCAAATCCCATTCATTCCCTTCGGGCCGTTCAAAGAAGACCTTCAGTCAATTTCTGTAGTAGTCCTTCTCCCTGAATACTAGGTCACTTCAATCTTTTCTTTTTTTATGTCGTTCTTCTGAGAAACGGTCGTTTGATGTGTCTTCTTGGTCAAAGTATCATCGAATTTTTAAACTCCCCTGAATCATCATTTCTTTGATAAACAAAATTTTGCAAGCGTAGAGCAAGAAGGTAACATTCCTATGAATTTAGCATATTTAGCATATCTATTGTGTATGTGTGCATTTTCTCAAATTTGCATATCTTCTGCCATCCTTTGAATTTTCTTTCATCACCATTGTTATGCAACGAAACACCTCCCATTTCTTCCAGAATCTTTTCCAGAATAATCTCTTCTTCTCAATCATCACTTTTTGTTGTTATCAGTTTTCTATTTCACCAGCTCTTGTGAACCATGCACCAATAAATATTTGCCGGYACGGCCTAATGGCCTTATCGGATAGAAGAGAGGGGTTTCTTACTCTCATGACTCGTCTCCTCGAGACTTTCACTTTTACCTATGGAATCACAATCATCACAATTCTACTTTGGTCTTCGTACCTCTCTTATCAGTGAAGGAAGAAAAGGGCTTTCCGTGAAATGGGCGGGGATGAGACCTTTGGTACCTAGGATTTTGGAACGTCAGTAAAGGACAAAGTTCCAAAAAGCATAGGATCAGAATTTTAGAATCAATGCTTACTGTTCAGAAATTTATTATTGGATTGACATATTCACAGTGTCTTGAAGTCTAGTTTGAACTTCTAGGAAAAAAGAGATCCTAACAGTAAACAGCCCTCAAAAGCCATTTGCATTTTTTGAGGAGCGAGTAAAAAATTCTCTACCAATTTTGTCCCATCCGTCCCTTCCATTTCAATTCTTTCGATTTGAGATGCAGATCCGATGCAAATGAAATGCACTCCCTCAATACGTCTTCTGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>503 260 237</canonical_bands>
                <polymorphic_bands>763 237</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>177 136 133 109 71 54 54 52 37 29 23 23 21 20 18 12 9 9 6 5 2</canonical_bands>
                <polymorphic_bands>177 136 133 109 91 54 54 52 37 29 23 23 21 18 12 9 9 6 5 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GCCGGC</site>
                <isoschizomers>
                    <enzyme>MroNI</enzyme>
                    <enzyme>NaeI</enzyme>
                    <enzyme>NgoAIV</enzyme>
                    <enzyme>NgoMIV</enzyme>
                    <enzyme>PdiI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCAAATTTGCATATCTTCT</pcr_primer_p1>
		<pcr_primer_p2>GACGAGTCATGAGAGTAAGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCAAATTTGCATATCTTCTGCCATCCTTTGAATTTTCTTTCATCACCATTGTTATGCAACGAAACACCTCCCATTTCTTCCAGAATCTTTTCCAGAATAATCTCTTCTTCTCAATCATCACTTTTTGTTGTTATCAGTTTTCTATTTCACCAGCTCTTGTGAACCATGCACCAATAAATATTTGCCGGCACGGCCTAATGGCCTTATCGGATAGAAGAGAGGGGTTTCTTACTCTCATGACTCGTC</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCAAATTTGCATATCTTCTGCCATCCTTTGAATTTTCTTTCATCACCATTGTTATGCAACGAAACACCTCCCATTTCTTCCAGAATCTTTTCCAGAATAATCTCTTCTTCTCAATCATCACTTTTTGTTGTTATCAGTTTTCTATTTCACCAGCTCTTGTGAACCATGCACCAATAAATATTTGCCGGYACGGCCTAATGGCCTTATCGGATAGAAGAGAGGGGTTTCTTACTCTCATGACTCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19629</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>401941</contig_pos>
        <strand>+</strand>
        <context>GGYACGGCCT[A/G]ATGGCCTTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCACCAGCTCTTGTGAACCATGCACCAATAAATATTTGCCGGCACGGCCT</left_flank>
        <right_flank>ATGGCCTTATCGGATAGAAGAGAGGGGTTTCTTACTCTCATGACTCGTCT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCTGCGCGTCTTCTCAAATCCCATTCATTCCCTTCGGGCCGTTCAAAGAAGACCTTCAGTCAATTTCTGTAGTAGTCCTTCTCCCTGAATACTAGGTCACTTCAATCTTTTCTTTTTTTATGTCGTTCTTCTGAGAAACGGTCGTTTGATGTGTCTTCTTGGTCAAAGTATCATCGAATTTTTAAACTCCCCTGAATCATCATTTCTTTGATAAACAAAATTTTGCAAGCGTAGAGCAAGAAGGTAACATTCCTATGAATTTAGCATATTTAGCATATCTATTGTGTATGTGTGCATTTTCTCAAATTTGCATATCTTCTGCCATCCTTTGAATTTTCTTTCATCACCATTGTTATGCAACGAAACACCTCCCATTTCTTCCAGAATCTTTTCCAGAATAATCTCTTCTTCTCAATCATCACTTTTTGTTGTTATCAGTTTTCTATTTCACCAGCTCTTGTGAACCATGCACCAATAAATATTTGCCGGCACGGCCTAATGGCCTTATCGGATAGAAGAGAGGGGTTTCTTACTCTCATGACTCGTCTCCTCGAGACTTTCACTTTTACCTATGGAATCACAATCATCACAATTCTACTTTGGTCTTCGTACCTCTCTTATCAGTGAAGGAAGAAAAGGGCTTTCCGTGAAATGGGCGGGGATGAGACCTTTGGTACCTAGGATTTTGGAACGTCAGTAAAGGACAAAGTTCCAAAAAGCATAGGATCAGAATTTTAGAATCAATGCTTACTGTTCAGAAATTTATTATTGGATTGACATATTCACAGTGTCTTGAAGTCTAGTTTGAACTTCTAGGAAAAAAGAGATCCTAACAGTAAACAGCCCTCAAAAGCCATTTGCATTTTTTGAGGAGCGAGTAAAAAATTCTCTACCAATTTTGTCCCATCCGTCCCTTCCATTTCAATTCTTTCGATTTGAGATGCAGATCCGATGCAAATGAAATGCACTCCCTCAATACGTCTTCTGGAATATGAATG</canonical>
            <polymorphic>CCTCTGCGCGTCTTCTCAAATCCCATTCATTCCCTTCGGGCCGTTCAAAGAAGACCTTCAGTCAATTTCTGTAGTAGTCCTTCTCCCTGAATACTAGGTCACTTCAATCTTTTCTTTTTTTATGTCGTTCTTCTGAGAAACGGTCGTTTGATGTGTCTTCTTGGTCAAAGTATCATCGAATTTTTAAACTCCCCTGAATCATCATTTCTTTGATAAACAAAATTTTGCAAGCGTAGAGCAAGAAGGTAACATTCCTATGAATTTAGCATATTTAGCATATCTATTGTGTATGTGTGCATTTTCTCAAATTTGCATATCTTCTGCCATCCTTTGAATTTTCTTTCATCACCATTGTTATGCAACGAAACACCTCCCATTTCTTCCAGAATCTTTTCCAGAATAATCTCTTCTTCTCAATCATCACTTTTTGTTGTTATCAGTTTTCTATTTCACCAGCTCTTGTGAACCATGCACCAATAAATATTTGCCGGCACGGCCTRATGGCCTTATCGGATAGAAGAGAGGGGTTTCTTACTCTCATGACTCGTCTCCTCGAGACTTTCACTTTTACCTATGGAATCACAATCATCACAATTCTACTTTGGTCTTCGTACCTCTCTTATCAGTGAAGGAAGAAAAGGGCTTTCCGTGAAATGGGCGGGGATGAGACCTTTGGTACCTAGGATTTTGGAACGTCAGTAAAGGACAAAGTTCCAAAAAGCATAGGATCAGAATTTTAGAATCAATGCTTACTGTTCAGAAATTTATTATTGGATTGACATATTCACAGTGTCTTGAAGTCTAGTTTGAACTTCTAGGAAAAAAGAGATCCTAACAGTAAACAGCCCTCAAAAGCCATTTGCATTTTTTGAGGAGCGAGTAAAAAATTCTCTACCAATTTTGTCCCATCCGTCCCTTCCATTTCAATTCTTTCGATTTGAGATGCAGATCCGATGCAAATGAAATGCACTCCCTCAATACGTCTTCTGGAATATGAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCTTTCATCACCATTGTT</pcr_primer_p1>
		<pcr_primer_p2>GTGATTCCATAGGTAAAAGTGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCTTTCATCACCATTGTTATGCAACGAAACACCTCCCATTTCTTCCAGAATCTTTTCCAGAATAATCTCTTCTTCTCAATCATCACTTTTTGTTGTTATCAGTTTTCTATTTCACCAGCTCTTGTGAACCATGCACCAATAAATATTTGCCGGCACGGCCTAATGGCCTTATCGGATAGAAGAGAGGGGTTTCTTACTCTCATGACTCGTCTCCTCGAGACTTTCACTTTTACCTATGGAATCAC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCTTTCATCACCATTGTTATGCAACGAAACACCTCCCATTTCTTCCAGAATCTTTTCCAGAATAATCTCTTCTTCTCAATCATCACTTTTTGTTGTTATCAGTTTTCTATTTCACCAGCTCTTGTGAACCATGCACCAATAAATATTTGCCGGCACGGCCTRATGGCCTTATCGGATAGAAGAGAGGGGTTTCTTACTCTCATGACTCGTCTCCTCGAGACTTTCACTTTTACCTATGGAATCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19631</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>412488</contig_pos>
        <strand>+</strand>
        <context>GATGGTACTG[A/G]CCGAGCAGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTGTGCATTTTTGCAAATTCGTTTTACTGATTGGCTGGGGATGGTACTG</left_flank>
        <right_flank>CCGAGCAGTCGATCCACTGTACTTCATGTCTATGTCGGGAACATCTCGCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGTTCCGATAATCCATGTACAGCTGAAAAATCAATTTAAACAGTAGTTTTGTGAATGAAATCTTACTAGGATTGCATAGGCTAATTGCTTTGAGTAAGATGTATTCAATCAGTTGAATATCACATCGAATCAAAGGAGCAAGTGCCATTGAAACAACCGGGTAATGGTACTCGCTGAAAACAACATTATTTAAAACTATACCCGTTTTTTGCAAGCCTACTCTCTTTGCGGTTGCTCCGTCCCATCCGGATGCACACACTTTTCCATTTTTCTTGACACCGCATAGTACGAATTATGAAGATTCATACAAAGAAGCGTGTTTTGTCCAATCAGAACTAATTGATCGTTCAAGTCCAGTTTTTGGAAAAACTTGAACGTCTTAGCGTATTCAATAAATGTCATCATATTGAAGAACATCCACATTTTTCTGAAAATGAGGTTATGTTAACTGTGCATTTTTGCAAATTCGTTTTACTGATTGGCTGGGGATGGTACTGGCCGAGCAGTCGATCCACTGTACTTCATGTCTATGTCGGGAACATCTCGCATTCTCGATACCTTCGGAAGTTCCATTTTCCTATTGATAGGCCATCCGCTCATTGGCTACAATTTAAGAGATACTGTCATTTTTAACTAAAAAAAGGTACCCCAAGATGATCGGCTAAACTTAATTTGTTTTCTCTGGTGACAAGTTCTTCGGTTGTTTTCATCCAGTCTATAATCGATGGGTTGTAGGCAGAGTTCTTGAATTGATCTATTTTCAATTCCAGGTAACATAACATGTCGATGATATTCTTGCTTAAATTCTCTTTAGAGATTATGGTTTGTATTGTTGGGATTTTTTCTTTTTCAAGCTCAGCGAGCTTCTTGAAGTTCAGCGCTTCTTTCTCCGTTTCATTTAATTCCAGGGCCTTTGAATTCATTCCAACCTCGATGCACTTTTTGAAACGACAAGATTGGCATCGCAACTGAAGCTGCACTGAAAAGTGAAATGATAA</canonical>
            <polymorphic>CATGTTCCGATAATCCATGTACAGCTGAAAAATCAATTTAAACAGTAGTTTTGTGAATGAAATCTTACTAGGATTGCATAGGCTAATTGCTTTGAGTAAGATGTATTCAATCAGTTGAATATCACATCGAATCAAAGGAGCAAGTGCCATTGAAACAACCGGGTAATGGTACTCGCTGAAAACAACATTATTTAAAACTATACCCGTTTTTTGCAAGCCTACTCTCTTTGCGGTTGCTCCGTCCCATCCGGATGCACACACTTTTCCATTTTTCTTGACACCGCATAGTACGAATTATGAAGATTCATACAAAGAAGCGTGTTTTGTCCAATCAGAACTAATTGATCGTTCAAGTCCAGTTTTTGGAAAAACTTGAACGTCTTAGCGTATTCAATAAATGTCATCATATTGAAGAACATCCACATTTTTCTGAAAATGAGGTTATGTTAACTGTGCATTTTTGCAAATTCGTTTTACTGATTGGCTGGGGATGGTACTGRCCGAGCAGTCGATCCACTGTACTTCATGTCTATGTCGGGAACATCTCGCATTCTCGATACCTTCGGAAGTTCCATTTTCCTATTGATAGGCCATCCGCTCATTGGCTACAATTTAAGAGATACTGTCATTTTTAACTAAAAAAAGGTACCCCAAGATGATCGGCTAAACTTAATTTGTTTTCTCTGGTGACAAGTTCTTCGGTTGTTTTCATCCAGTCTATAATCGATGGGTTGTAGGCAGAGTTCTTGAATTGATCTATTTTCAATTCCAGGTAACATAACATGTCGATGATATTCTTGCTTAAATTCTCTTTAGAGATTATGGTTTGTATTGTTGGGATTTTTTCTTTTTCAAGCTCAGCGAGCTTCTTGAAGTTCAGCGCTTCTTTCTCCGTTTCATTTAATTCCAGGGCCTTTGAATTCATTCCAACCTCGATGCACTTTTTGAAACGACAAGATTGGCATCGCAACTGAAGCTGCACTGAAAAGTGAAATGATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 322 90 88</canonical_bands>
                <polymorphic_bands>590 322 88</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>267 193 135 90 64 58 58 47 24 24 16 15 9</canonical_bands>
                <polymorphic_bands>267 193 135 106 64 58 58 47 24 24 15 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTGAACGTCTTAGCGTATTC</pcr_primer_p1>
		<pcr_primer_p2>TCTCTTAAATTGTAGCCAATGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTGAACGTCTTAGCGTATTCAATAAATGTCATCATATTGAAGAACATCCACATTTTTCTGAAAATGAGGTTATGTTAACTGTGCATTTTTGCAAATTCGTTTTACTGATTGGCTGGGGATGGTACTGGCCGAGCAGTCGATCCACTGTACTTCATGTCTATGTCGGGAACATCTCGCATTCTCGATACCTTCGGAAGTTCCATTTTCCTATTGATAGGCCATCCGCTCATTGGCTACAATTTAAGAGA</canonical_amplicon>
		<polymorphic_amplicon>ACTTGAACGTCTTAGCGTATTCAATAAATGTCATCATATTGAAGAACATCCACATTTTTCTGAAAATGAGGTTATGTTAACTGTGCATTTTTGCAAATTCGTTTTACTGATTGGCTGGGGATGGTACTGRCCGAGCAGTCGATCCACTGTACTTCATGTCTATGTCGGGAACATCTCGCATTCTCGATACCTTCGGAAGTTCCATTTTCCTATTGATAGGCCATCCGCTCATTGGCTACAATTTAAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19632</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>412385</contig_pos>
        <strand>+</strand>
        <context>GTATTCAATA[A/G]ATGTCATCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTTCAAGTCCAGTTTTTGGAAAAACTTGAACGTCTTAGCGTATTCAATA</left_flank>
        <right_flank>ATGTCATCATATTGAAGAACATCCACATTTTTCTGAAAATGAGGTTATGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAGTTCCACGAATCTACTCGGTCCATATGATCGATTTCTTAGACAATGATCTAAAAGGACATCCGAAAACTGCTGGCGCTCTTTTGCGATAATAGTTTGTCCATGTTCCGATAATCCATGTACAGCTGAAAAATCAATTTAAACAGTAGTTTTGTGAATGAAATCTTACTAGGATTGCATAGGCTAATTGCTTTGAGTAAGATGTATTCAATCAGTTGAATATCACATCGAATCAAAGGAGCAAGTGCCATTGAAACAACCGGGTAATGGTACTCGCTGAAAACAACATTATTTAAAACTATACCCGTTTTTTGCAAGCCTACTCTCTTTGCGGTTGCTCCGTCCCATCCGGATGCACACACTTTTCCATTTTTCTTGACACCGCATAGTACGAATTATGAAGATTCATACAAAGAAGCGTGTTTTGTCCAATCAGAACTAATTGATCGTTCAAGTCCAGTTTTTGGAAAAACTTGAACGTCTTAGCGTATTCAATAAATGTCATCATATTGAAGAACATCCACATTTTTCTGAAAATGAGGTTATGTTAACTGTGCATTTTTGCAAATTCGTTTTACTGATTGGCTGGGGATGGTACTGGCCGAGCAGTCGATCCACTGTACTTCATGTCTATGTCGGGAACATCTCGCATTCTCGATACCTTCGGAAGTTCCATTTTCCTATTGATAGGCCATCCGCTCATTGGCTACAATTTAAGAGATACTGTCATTTTTAACTAAAAAAAGGTACCCCAAGATGATCGGCTAAACTTAATTTGTTTTCTCTGGTGACAAGTTCTTCGGTTGTTTTCATCCAGTCTATAATCGATGGGTTGTAGGCAGAGTTCTTGAATTGATCTATTTTCAATTCCAGGTAACATAACATGTCGATGATATTCTTGCTTAAATTCTCTTTAGAGATTATGGTTTGTATTGTTGGGATTTTTTCTTTTTCAAGCTCAGCGAGCTTCTTGAAGTTCAGCGCTTCTTTCTCCGTTT</canonical>
            <polymorphic>AGAAGTTCCACGAATCTACTCGGTCCATATGATCGATTTCTTAGACAATGATCTAAAAGGACATCCGAAAACTGCTGGCGCTCTTTTGCGATAATAGTTTGTCCATGTTCCGATAATCCATGTACAGCTGAAAAATCAATTTAAACAGTAGTTTTGTGAATGAAATCTTACTAGGATTGCATAGGCTAATTGCTTTGAGTAAGATGTATTCAATCAGTTGAATATCACATCGAATCAAAGGAGCAAGTGCCATTGAAACAACCGGGTAATGGTACTCGCTGAAAACAACATTATTTAAAACTATACCCGTTTTTTGCAAGCCTACTCTCTTTGCGGTTGCTCCGTCCCATCCGGATGCACACACTTTTCCATTTTTCTTGACACCGCATAGTACGAATTATGAAGATTCATACAAAGAAGCGTGTTTTGTCCAATCAGAACTAATTGATCGTTCAAGTCCAGTTTTTGGAAAAACTTGAACGTCTTAGCGTATTCAATARATGTCATCATATTGAAGAACATCCACATTTTTCTGAAAATGAGGTTATGTTAACTGTGCATTTTTGCAAATTCGTTTTACTGATTGGCTGGGGATGGTACTGGCCGAGCAGTCGATCCACTGTACTTCATGTCTATGTCGGGAACATCTCGCATTCTCGATACCTTCGGAAGTTCCATTTTCCTATTGATAGGCCATCCGCTCATTGGCTACAATTTAAGAGATACTGTCATTTTTAACTAAAAAAAGGTACCCCAAGATGATCGGCTAAACTTAATTTGTTTTCTCTGGTGACAAGTTCTTCGGTTGTTTTCATCCAGTCTATAATCGATGGGTTGTAGGCAGAGTTCTTGAATTGATCTATTTTCAATTCCAGGTAACATAACATGTCGATGATATTCTTGCTTAAATTCTCTTTAGAGATTATGGTTTGTATTGTTGGGATTTTTTCTTTTTCAAGCTCAGCGAGCTTCTTGAAGTTCAGCGCTTCTTTCTCCGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGCAAGCCTACTCTCTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGCACAGTTAACATAACCTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTGCAAGCCTACTCTCTTTGCGGTTGCTCCGTCCCATCCGGATGCACACACTTTTCCATTTTTCTTGACACCGCATAGTACGAATTATGAAGATTCATACAAAGAAGCGTGTTTTGTCCAATCAGAACTAATTGATCGTTCAAGTCCAGTTTTTGGAAAAACTTGAACGTCTTAGCGTATTCAATAAATGTCATCATATTGAAGAACATCCACATTTTTCTGAAAATGAGGTTATGTTAACTGTGCAT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGCAAGCCTACTCTCTTTGCGGTTGCTCCGTCCCATCCGGATGCACACACTTTTCCATTTTTCTTGACACCGCATAGTACGAATTATGAAGATTCATACAAAGAAGCGTGTTTTGTCCAATCAGAACTAATTGATCGTTCAAGTCCAGTTTTTGGAAAAACTTGAACGTCTTAGCGTATTCAATARATGTCATCATATTGAAGAACATCCACATTTTTCTGAAAATGAGGTTATGTTAACTGTGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19633</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>412245</contig_pos>
        <strand>+</strand>
        <context>TCCGGATGCA[C/T]ACACTTTTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTGCAAGCCTACTCTCTTTGCGGTTGCTCCGTCCCATCCGGATGCA</left_flank>
        <right_flank>ACACTTTTCCATTTTTCTTGACACCGCATAGTACGAATTATGAAGATTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAAAAGGTTTACTACGAATACATAATCTCATCCAAAAACTGGACAGAAAATGGAAATTTAGAGATAATTGGCGAAATATGATAAATATGAATATCCTTTTGCAGTCTTTGTTGGCGAACTAAAACTGAAATGATTTCAAGAAGTTCCACGAATCTACTCGGTCCATATGATCGATTTCTTAGACAATGATCTAAAAGGACATCCGAAAACTGCTGGCGCTCTTTTGCGATAATAGTTTGTCCATGTTCCGATAATCCATGTACAGCTGAAAAATCAATTTAAACAGTAGTTTTGTGAATGAAATCTTACTAGGATTGCATAGGCTAATTGCTTTGAGTAAGATGTATTCAATCAGTTGAATATCACATCGAATCAAAGGAGCAAGTGCCATTGAAACAACCGGGTAATGGTACTCGCTGAAAACAACATTATTTAAAACTATACCCGTTTTTTGCAAGCCTACTCTCTTTGCGGTTGCTCCGTCCCATCCGGATGCACACACTTTTCCATTTTTCTTGACACCGCATAGTACGAATTATGAAGATTCATACAAAGAAGCGTGTTTTGTCCAATCAGAACTAATTGATCGTTCAAGTCCAGTTTTTGGAAAAACTTGAACGTCTTAGCGTATTCAATAAATGTCATCATATTGAAGAACATCCACATTTTTCTGAAAATGAGGTTATGTTAACTGTGCATTTTTGCAAATTCGTTTTACTGATTGGCTGGGGATGGTACTGGCCGAGCAGTCGATCCACTGTACTTCATGTCTATGTCGGGAACATCTCGCATTCTCGATACCTTCGGAAGTTCCATTTTCCTATTGATAGGCCATCCGCTCATTGGCTACAATTTAAGAGATACTGTCATTTTTAACTAAAAAAAGGTACCCCAAGATGATCGGCTAAACTTAATTTGTTTTCTCTGGTGACAAGTTCTTCGGTTGTTTTCATCCAGTCTATAATCGATGGGTTGTAGGCAGAGTTCTTGAATTGATC</canonical>
            <polymorphic>TAAAAAAGGTTTACTACGAATACATAATCTCATCCAAAAACTGGACAGAAAATGGAAATTTAGAGATAATTGGCGAAATATGATAAATATGAATATCCTTTTGCAGTCTTTGTTGGCGAACTAAAACTGAAATGATTTCAAGAAGTTCCACGAATCTACTCGGTCCATATGATCGATTTCTTAGACAATGATCTAAAAGGACATCCGAAAACTGCTGGCGCTCTTTTGCGATAATAGTTTGTCCATGTTCCGATAATCCATGTACAGCTGAAAAATCAATTTAAACAGTAGTTTTGTGAATGAAATCTTACTAGGATTGCATAGGCTAATTGCTTTGAGTAAGATGTATTCAATCAGTTGAATATCACATCGAATCAAAGGAGCAAGTGCCATTGAAACAACCGGGTAATGGTACTCGCTGAAAACAACATTATTTAAAACTATACCCGTTTTTTGCAAGCCTACTCTCTTTGCGGTTGCTCCGTCCCATCCGGATGCAYACACTTTTCCATTTTTCTTGACACCGCATAGTACGAATTATGAAGATTCATACAAAGAAGCGTGTTTTGTCCAATCAGAACTAATTGATCGTTCAAGTCCAGTTTTTGGAAAAACTTGAACGTCTTAGCGTATTCAATAAATGTCATCATATTGAAGAACATCCACATTTTTCTGAAAATGAGGTTATGTTAACTGTGCATTTTTGCAAATTCGTTTTACTGATTGGCTGGGGATGGTACTGGCCGAGCAGTCGATCCACTGTACTTCATGTCTATGTCGGGAACATCTCGCATTCTCGATACCTTCGGAAGTTCCATTTTCCTATTGATAGGCCATCCGCTCATTGGCTACAATTTAAGAGATACTGTCATTTTTAACTAAAAAAAGGTACCCCAAGATGATCGGCTAAACTTAATTTGTTTTCTCTGGTGACAAGTTCTTCGGTTGTTTTCATCCAGTCTATAATCGATGGGTTGTAGGCAGAGTTCTTGAATTGATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>173 150 148 110 101 69 68 61 41 33 22 20 2 2</canonical_bands>
                <polymorphic_bands>173 150 148 114 101 69 68 61 41 33 22 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGTAAGATGTATTCAATCAGTTG</pcr_primer_p1>
		<pcr_primer_p2>TTAGTTCTGATTGGACAAAACAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAGTAAGATGTATTCAATCAGTTGAATATCACATCGAATCAAAGGAGCAAGTGCCATTGAAACAACCGGGTAATGGTACTCGCTGAAAACAACATTATTTAAAACTATACCCGTTTTTTGCAAGCCTACTCTCTTTGCGGTTGCTCCGTCCCATCCGGATGCACACACTTTTCCATTTTTCTTGACACCGCATAGTACGAATTATGAAGATTCATACAAAGAAGCGTGTTTTGTCCAATCAGAACTAA</canonical_amplicon>
		<polymorphic_amplicon>TGAGTAAGATGTATTCAATCAGTTGAATATCACATCGAATCAAAGGAGCAAGTGCCATTGAAACAACCGGGTAATGGTACTCGCTGAAAACAACATTATTTAAAACTATACCCGTTTTTTGCAAGCCTACTCTCTTTGCGGTTGCTCCGTCCCATCCGGATGCAYACACTTTTCCATTTTTCTTGACACCGCATAGTACGAATTATGAAGATTCATACAAAGAAGCGTGTTTTGTCCAATCAGAACTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19634</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>412110</contig_pos>
        <strand>+</strand>
        <context>CAGTTGAATA[C/T]CACATCGAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTGCATAGGCTAATTGCTTTGAGTAAGATGTATTCAATCAGTTGAATA</left_flank>
        <right_flank>CACATCGAATCAAAGGAGCAAGTGCCATTGAAACAACCGGGTAATGGTAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCCGAGGAATTCCCCCAATTGTACAGATGGCCTTGGCCAGTCAATTGGTGTCTAATTTGGCCTCGGATGTACGTACTTTCATCTAGAAGATTAGTTTGATTAGTTTTAGACATCGGAGATGTATTAGAAGGATTAAAAAAGGTTTACTACGAATACATAATCTCATCCAAAAACTGGACAGAAAATGGAAATTTAGAGATAATTGGCGAAATATGATAAATATGAATATCCTTTTGCAGTCTTTGTTGGCGAACTAAAACTGAAATGATTTCAAGAAGTTCCACGAATCTACTCGGTCCATATGATCGATTTCTTAGACAATGATCTAAAAGGACATCCGAAAACTGCTGGCGCTCTTTTGCGATAATAGTTTGTCCATGTTCCGATAATCCATGTACAGCTGAAAAATCAATTTAAACAGTAGTTTTGTGAATGAAATCTTACTAGGATTGCATAGGCTAATTGCTTTGAGTAAGATGTATTCAATCAGTTGAATATCACATCGAATCAAAGGAGCAAGTGCCATTGAAACAACCGGGTAATGGTACTCGCTGAAAACAACATTATTTAAAACTATACCCGTTTTTTGCAAGCCTACTCTCTTTGCGGTTGCTCCGTCCCATCCGGATGCACACACTTTTCCATTTTTCTTGACACCGCATAGTACGAATTATGAAGATTCATACAAAGAAGCGTGTTTTGTCCAATCAGAACTAATTGATCGTTCAAGTCCAGTTTTTGGAAAAACTTGAACGTCTTAGCGTATTCAATAAATGTCATCATATTGAAGAACATCCACATTTTTCTGAAAATGAGGTTATGTTAACTGTGCATTTTTGCAAATTCGTTTTACTGATTGGCTGGGGATGGTACTGGCCGAGCAGTCGATCCACTGTACTTCATGTCTATGTCGGGAACATCTCGCATTCTCGATACCTTCGGAAGTTCCATTTTCCTATTGATAGGCCATCCGCTCATTGGCTACAATTTAAGAGATA</canonical>
            <polymorphic>GTCCCGAGGAATTCCCCCAATTGTACAGATGGCCTTGGCCAGTCAATTGGTGTCTAATTTGGCCTCGGATGTACGTACTTTCATCTAGAAGATTAGTTTGATTAGTTTTAGACATCGGAGATGTATTAGAAGGATTAAAAAAGGTTTACTACGAATACATAATCTCATCCAAAAACTGGACAGAAAATGGAAATTTAGAGATAATTGGCGAAATATGATAAATATGAATATCCTTTTGCAGTCTTTGTTGGCGAACTAAAACTGAAATGATTTCAAGAAGTTCCACGAATCTACTCGGTCCATATGATCGATTTCTTAGACAATGATCTAAAAGGACATCCGAAAACTGCTGGCGCTCTTTTGCGATAATAGTTTGTCCATGTTCCGATAATCCATGTACAGCTGAAAAATCAATTTAAACAGTAGTTTTGTGAATGAAATCTTACTAGGATTGCATAGGCTAATTGCTTTGAGTAAGATGTATTCAATCAGTTGAATAYCACATCGAATCAAAGGAGCAAGTGCCATTGAAACAACCGGGTAATGGTACTCGCTGAAAACAACATTATTTAAAACTATACCCGTTTTTTGCAAGCCTACTCTCTTTGCGGTTGCTCCGTCCCATCCGGATGCACACACTTTTCCATTTTTCTTGACACCGCATAGTACGAATTATGAAGATTCATACAAAGAAGCGTGTTTTGTCCAATCAGAACTAATTGATCGTTCAAGTCCAGTTTTTGGAAAAACTTGAACGTCTTAGCGTATTCAATAAATGTCATCATATTGAAGAACATCCACATTTTTCTGAAAATGAGGTTATGTTAACTGTGCATTTTTGCAAATTCGTTTTACTGATTGGCTGGGGATGGTACTGGCCGAGCAGTCGATCCACTGTACTTCATGTCTATGTCGGGAACATCTCGCATTCTCGATACCTTCGGAAGTTCCATTTTCCTATTGATAGGCCATCCGCTCATTGGCTACAATTTAAGAGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGTGAATGAAATCTTACTAGG</pcr_primer_p1>
		<pcr_primer_p2>ATAATTCGTACTATGCGGTGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTGTGAATGAAATCTTACTAGGATTGCATAGGCTAATTGCTTTGAGTAAGATGTATTCAATCAGTTGAATATCACATCGAATCAAAGGAGCAAGTGCCATTGAAACAACCGGGTAATGGTACTCGCTGAAAACAACATTATTTAAAACTATACCCGTTTTTTGCAAGCCTACTCTCTTTGCGGTTGCTCCGTCCCATCCGGATGCACACACTTTTCCATTTTTCTTGACACCGCATAGTACGAATTAT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGTGAATGAAATCTTACTAGGATTGCATAGGCTAATTGCTTTGAGTAAGATGTATTCAATCAGTTGAATAYCACATCGAATCAAAGGAGCAAGTGCCATTGAAACAACCGGGTAATGGTACTCGCTGAAAACAACATTATTTAAAACTATACCCGTTTTTTGCAAGCCTACTCTCTTTGCGGTTGCTCCGTCCCATCCGGATGCACACACTTTTCCATTTTTCTTGACACCGCATAGTACGAATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19635</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>412073</contig_pos>
        <strand>+</strand>
        <context>TGCATAGGCT[A/G]ATTGCTTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTAAACAGTAGTTTTGTGAATGAAATCTTACTAGGATTGCATAGGCT</left_flank>
        <right_flank>ATTGCTTTGAGTAAGATGTATTCAATCAGTTGAATATCACATCGAATCAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGGAAATAAGTTTATCGTCCAGCTGATGAGAGGGCAGTCCCGAGGAATTCCCCCAATTGTACAGATGGCCTTGGCCAGTCAATTGGTGTCTAATTTGGCCTCGGATGTACGTACTTTCATCTAGAAGATTAGTTTGATTAGTTTTAGACATCGGAGATGTATTAGAAGGATTAAAAAAGGTTTACTACGAATACATAATCTCATCCAAAAACTGGACAGAAAATGGAAATTTAGAGATAATTGGCGAAATATGATAAATATGAATATCCTTTTGCAGTCTTTGTTGGCGAACTAAAACTGAAATGATTTCAAGAAGTTCCACGAATCTACTCGGTCCATATGATCGATTTCTTAGACAATGATCTAAAAGGACATCCGAAAACTGCTGGCGCTCTTTTGCGATAATAGTTTGTCCATGTTCCGATAATCCATGTACAGCTGAAAAATCAATTTAAACAGTAGTTTTGTGAATGAAATCTTACTAGGATTGCATAGGCTAATTGCTTTGAGTAAGATGTATTCAATCAGTTGAATATCACATCGAATCAAAGGAGCAAGTGCCATTGAAACAACCGGGTAATGGTACTCGCTGAAAACAACATTATTTAAAACTATACCCGTTTTTTGCAAGCCTACTCTCTTTGCGGTTGCTCCGTCCCATCCGGATGCACACACTTTTCCATTTTTCTTGACACCGCATAGTACGAATTATGAAGATTCATACAAAGAAGCGTGTTTTGTCCAATCAGAACTAATTGATCGTTCAAGTCCAGTTTTTGGAAAAACTTGAACGTCTTAGCGTATTCAATAAATGTCATCATATTGAAGAACATCCACATTTTTCTGAAAATGAGGTTATGTTAACTGTGCATTTTTGCAAATTCGTTTTACTGATTGGCTGGGGATGGTACTGGCCGAGCAGTCGATCCACTGTACTTCATGTCTATGTCGGGAACATCTCGCATTCTCGATACCTTCGGAAGTTCCATTTTCCTATTG</canonical>
            <polymorphic>AAGGAAATAAGTTTATCGTCCAGCTGATGAGAGGGCAGTCCCGAGGAATTCCCCCAATTGTACAGATGGCCTTGGCCAGTCAATTGGTGTCTAATTTGGCCTCGGATGTACGTACTTTCATCTAGAAGATTAGTTTGATTAGTTTTAGACATCGGAGATGTATTAGAAGGATTAAAAAAGGTTTACTACGAATACATAATCTCATCCAAAAACTGGACAGAAAATGGAAATTTAGAGATAATTGGCGAAATATGATAAATATGAATATCCTTTTGCAGTCTTTGTTGGCGAACTAAAACTGAAATGATTTCAAGAAGTTCCACGAATCTACTCGGTCCATATGATCGATTTCTTAGACAATGATCTAAAAGGACATCCGAAAACTGCTGGCGCTCTTTTGCGATAATAGTTTGTCCATGTTCCGATAATCCATGTACAGCTGAAAAATCAATTTAAACAGTAGTTTTGTGAATGAAATCTTACTAGGATTGCATAGGCTRATTGCTTTGAGTAAGATGTATTCAATCAGTTGAATATCACATCGAATCAAAGGAGCAAGTGCCATTGAAACAACCGGGTAATGGTACTCGCTGAAAACAACATTATTTAAAACTATACCCGTTTTTTGCAAGCCTACTCTCTTTGCGGTTGCTCCGTCCCATCCGGATGCACACACTTTTCCATTTTTCTTGACACCGCATAGTACGAATTATGAAGATTCATACAAAGAAGCGTGTTTTGTCCAATCAGAACTAATTGATCGTTCAAGTCCAGTTTTTGGAAAAACTTGAACGTCTTAGCGTATTCAATAAATGTCATCATATTGAAGAACATCCACATTTTTCTGAAAATGAGGTTATGTTAACTGTGCATTTTTGCAAATTCGTTTTACTGATTGGCTGGGGATGGTACTGGCCGAGCAGTCGATCCACTGTACTTCATGTCTATGTCGGGAACATCTCGCATTCTCGATACCTTCGGAAGTTCCATTTTCCTATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>210 208 136 126 120 50 47 46 26 11 11 9</canonical_bands>
                <polymorphic_bands>258 210 136 126 120 47 46 26 11 11 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTTTTGCGATAATAGTTTGTC</pcr_primer_p1>
		<pcr_primer_p2>AAGAGAGTAGGCTTGCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTCTTTTGCGATAATAGTTTGTCCATGTTCCGATAATCCATGTACAGCTGAAAAATCAATTTAAACAGTAGTTTTGTGAATGAAATCTTACTAGGATTGCATAGGCTAATTGCTTTGAGTAAGATGTATTCAATCAGTTGAATATCACATCGAATCAAAGGAGCAAGTGCCATTGAAACAACCGGGTAATGGTACTCGCTGAAAACAACATTATTTAAAACTATACCCGTTTTTTGCAAGCCTACTCTCTT</canonical_amplicon>
		<polymorphic_amplicon>CTCTTTTGCGATAATAGTTTGTCCATGTTCCGATAATCCATGTACAGCTGAAAAATCAATTTAAACAGTAGTTTTGTGAATGAAATCTTACTAGGATTGCATAGGCTRATTGCTTTGAGTAAGATGTATTCAATCAGTTGAATATCACATCGAATCAAAGGAGCAAGTGCCATTGAAACAACCGGGTAATGGTACTCGCTGAAAACAACATTATTTAAAACTATACCCGTTTTTTGCAAGCCTACTCTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19636</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>71259</contig_pos>
        <strand>+</strand>
        <context>TAACTAATAA[A/G]GTTTTCACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTCTGACAGTCGGAGTTGTTCTGATGGTAAGAGATCATAACTAATAA</left_flank>
        <right_flank>GTTTTCACAACTATGGTGGAAATATAACTTTTCCGATTCTCATATTTACA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATATCCTCAAAAATCCAAATCAATACTTATTGAACCTTTCTTTTCTCAAAATGTTCAATGCTCGGTGGATCTTGAAGTTTGGAAATTCAAAAATTCAAAAACACAAACATCTTTCTTTCTTCCCAAAACTGATCATTCTTTTTCACCTCAAATCCACTATAATCCTCTCGCAACGTCATATACGATATTTTAGCACCTGACCAAAAATCCTAAAATCTTTCAAAAAATAATGAAGCAATTGTCTCCGACGGATTATCGTAGTGGGTTTAAAAGCGGAATCGTCTTACCTTGTGCACATTCATTCTAAGATGGAGTTTATCGGTAGTGATATCGACCAAAGCTATAATTATGTGATTCGACACGGATTCCATTTGAACGAATGGTTTTATAATTGTACCGGAATCGATGGATTCGCATTGGGAGTTCCTCGGCCATGGCTTGGTTCTTATTTTCTGACAGTCGGAGTTGTTCTGATGGTAAGAGATCATAACTAATAAAGTTTTCACAACTATGGTGGAAATATAACTTTTCCGATTCTCATATTTACAAAAATTCCTTAAAACAGAGAAACTTTTTAAGATTTGCCTTTTTTCGGAGTTACGGTTTACCTGACGGTGTGTAGTTATTAGTTTTCACTTAGCTATCGTGCCGCTTTGCATATGATATGATATGATATCGGTCGGAAGCGCAGCACGAAAGCGCAGCACATAGCTCAGCTGGAAGCGACGCGGCACCGTTAGACCCACAAGTTCAAGTCCCCGACGGGCTCATATGAACAAAACTTTGATTAAATTATTTTTTCATGTCCCACCACCTTTCAAGTTTCACGTTAGAGGCTCCTACTATCATAGGTTTTACGGCAAAGCAGGTTGTTCGGAAACAACAAAAAACAACAAAAACAACAAAAAACAACAAAACCAATGAGCATAATGCTGAAATATCGATTCATAAGTTTACAAACATTCATTGAAACAGAAAGTTTTTGAAAATGTAACAGT</canonical>
            <polymorphic>TAATATCCTCAAAAATCCAAATCAATACTTATTGAACCTTTCTTTTCTCAAAATGTTCAATGCTCGGTGGATCTTGAAGTTTGGAAATTCAAAAATTCAAAAACACAAACATCTTTCTTTCTTCCCAAAACTGATCATTCTTTTTCACCTCAAATCCACTATAATCCTCTCGCAACGTCATATACGATATTTTAGCACCTGACCAAAAATCCTAAAATCTTTCAAAAAATAATGAAGCAATTGTCTCCGACGGATTATCGTAGTGGGTTTAAAAGCGGAATCGTCTTACCTTGTGCACATTCATTCTAAGATGGAGTTTATCGGTAGTGATATCGACCAAAGCTATAATTATGTGATTCGACACGGATTCCATTTGAACGAATGGTTTTATAATTGTACCGGAATCGATGGATTCGCATTGGGAGTTCCTCGGCCATGGCTTGGTTCTTATTTTCTGACAGTCGGAGTTGTTCTGATGGTAAGAGATCATAACTAATAARGTTTTCACAACTATGGTGGAAATATAACTTTTCCGATTCTCATATTTACAAAAATTCCTTAAAACAGAGAAACTTTTTAAGATTTGCCTTTTTTCGGAGTTACGGTTTACCTGACGGTGTGTAGTTATTAGTTTTCACTTAGCTATCGTGCCGCTTTGCATATGATATGATATGATATCGGTCGGAAGCGCAGCACGAAAGCGCAGCACATAGCTCAGCTGGAAGCGACGCGGCACCGTTAGACCCACAAGTTCAAGTCCCCGACGGGCTCATATGAACAAAACTTTGATTAAATTATTTTTTCATGTCCCACCACCTTTCAAGTTTCACGTTAGAGGCTCCTACTATCATAGGTTTTACGGCAAAGCAGGTTGTTCGGAAACAACAAAAAACAACAAAAACAACAAAAAACAACAAAACCAATGAGCATAATGCTGAAATATCGATTCATAAGTTTACAAACATTCATTGAAACAGAAAGTTTTTGAAAATGTAACAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGATATCGACCAAAGCTATAA</pcr_primer_p1>
		<pcr_primer_p2>TTCTCTGTTTTAAGGAATTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGTGATATCGACCAAAGCTATAATTATGTGATTCGACACGGATTCCATTTGAACGAATGGTTTTATAATTGTACCGGAATCGATGGATTCGCATTGGGAGTTCCTCGGCCATGGCTTGGTTCTTATTTTCTGACAGTCGGAGTTGTTCTGATGGTAAGAGATCATAACTAATAAAGTTTTCACAACTATGGTGGAAATATAACTTTTCCGATTCTCATATTTACAAAAATTCCTTAAAACAGAGAA</canonical_amplicon>
		<polymorphic_amplicon>AGTGATATCGACCAAAGCTATAATTATGTGATTCGACACGGATTCCATTTGAACGAATGGTTTTATAATTGTACCGGAATCGATGGATTCGCATTGGGAGTTCCTCGGCCATGGCTTGGTTCTTATTTTCTGACAGTCGGAGTTGTTCTGATGGTAAGAGATCATAACTAATAARGTTTTCACAACTATGGTGGAAATATAACTTTTCCGATTCTCATATTTACAAAAATTCCTTAAAACAGAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19637</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>71333</contig_pos>
        <strand>+</strand>
        <context>ACAGAGAAAC[C/T]TTTTAAGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAACTTTTCCGATTCTCATATTTACAAAAATTCCTTAAAACAGAGAAAC</left_flank>
        <right_flank>TTTTAAGATTTGCCTTTTTTCGGAGTTACGGTTTACCTGACGGTGTGTAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAGTTTGGAAATTCAAAAATTCAAAAACACAAACATCTTTCTTTCTTCCCAAAACTGATCATTCTTTTTCACCTCAAATCCACTATAATCCTCTCGCAACGTCATATACGATATTTTAGCACCTGACCAAAAATCCTAAAATCTTTCAAAAAATAATGAAGCAATTGTCTCCGACGGATTATCGTAGTGGGTTTAAAAGCGGAATCGTCTTACCTTGTGCACATTCATTCTAAGATGGAGTTTATCGGTAGTGATATCGACCAAAGCTATAATTATGTGATTCGACACGGATTCCATTTGAACGAATGGTTTTATAATTGTACCGGAATCGATGGATTCGCATTGGGAGTTCCTCGGCCATGGCTTGGTTCTTATTTTCTGACAGTCGGAGTTGTTCTGATGGTAAGAGATCATAACTAATAAAGTTTTCACAACTATGGTGGAAATATAACTTTTCCGATTCTCATATTTACAAAAATTCCTTAAAACAGAGAAACTTTTTAAGATTTGCCTTTTTTCGGAGTTACGGTTTACCTGACGGTGTGTAGTTATTAGTTTTCACTTAGCTATCGTGCCGCTTTGCATATGATATGATATGATATCGGTCGGAAGCGCAGCACGAAAGCGCAGCACATAGCTCAGCTGGAAGCGACGCGGCACCGTTAGACCCACAAGTTCAAGTCCCCGACGGGCTCATATGAACAAAACTTTGATTAAATTATTTTTTCATGTCCCACCACCTTTCAAGTTTCACGTTAGAGGCTCCTACTATCATAGGTTTTACGGCAAAGCAGGTTGTTCGGAAACAACAAAAAACAACAAAAACAACAAAAAACAACAAAACCAATGAGCATAATGCTGAAATATCGATTCATAAGTTTACAAACATTCATTGAAACAGAAAGTTTTTGAAAATGTAACAGTCAAGAGTTGGTGGTGGAAAAAATCATCCCATACCGTATTTCCTCTGATAGATGTCCATCCCAACCGTCAAGTTC</canonical>
            <polymorphic>TGAAGTTTGGAAATTCAAAAATTCAAAAACACAAACATCTTTCTTTCTTCCCAAAACTGATCATTCTTTTTCACCTCAAATCCACTATAATCCTCTCGCAACGTCATATACGATATTTTAGCACCTGACCAAAAATCCTAAAATCTTTCAAAAAATAATGAAGCAATTGTCTCCGACGGATTATCGTAGTGGGTTTAAAAGCGGAATCGTCTTACCTTGTGCACATTCATTCTAAGATGGAGTTTATCGGTAGTGATATCGACCAAAGCTATAATTATGTGATTCGACACGGATTCCATTTGAACGAATGGTTTTATAATTGTACCGGAATCGATGGATTCGCATTGGGAGTTCCTCGGCCATGGCTTGGTTCTTATTTTCTGACAGTCGGAGTTGTTCTGATGGTAAGAGATCATAACTAATAAAGTTTTCACAACTATGGTGGAAATATAACTTTTCCGATTCTCATATTTACAAAAATTCCTTAAAACAGAGAAACYTTTTAAGATTTGCCTTTTTTCGGAGTTACGGTTTACCTGACGGTGTGTAGTTATTAGTTTTCACTTAGCTATCGTGCCGCTTTGCATATGATATGATATGATATCGGTCGGAAGCGCAGCACGAAAGCGCAGCACATAGCTCAGCTGGAAGCGACGCGGCACCGTTAGACCCACAAGTTCAAGTCCCCGACGGGCTCATATGAACAAAACTTTGATTAAATTATTTTTTCATGTCCCACCACCTTTCAAGTTTCACGTTAGAGGCTCCTACTATCATAGGTTTTACGGCAAAGCAGGTTGTTCGGAAACAACAAAAAACAACAAAAACAACAAAAAACAACAAAACCAATGAGCATAATGCTGAAATATCGATTCATAAGTTTACAAACATTCATTGAAACAGAAAGTTTTTGAAAATGTAACAGTCAAGAGTTGGTGGTGGAAAAAATCATCCCATACCGTATTTCCTCTGATAGATGTCCATCCCAACCGTCAAGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGGTTCTTATTTTCTGACAGT</pcr_primer_p1>
		<pcr_primer_p2>GGCACGATAGCTAAGTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>213</pcr_amplicon_size>
		<canonical_amplicon>CTTGGTTCTTATTTTCTGACAGTCGGAGTTGTTCTGATGGTAAGAGATCATAACTAATAAAGTTTTCACAACTATGGTGGAAATATAACTTTTCCGATTCTCATATTTACAAAAATTCCTTAAAACAGAGAAACTTTTTAAGATTTGCCTTTTTTCGGAGTTACGGTTTACCTGACGGTGTGTAGTTATTAGTTTTCACTTAGCTATCGTGCC</canonical_amplicon>
		<polymorphic_amplicon>CTTGGTTCTTATTTTCTGACAGTCGGAGTTGTTCTGATGGTAAGAGATCATAACTAATAAAGTTTTCACAACTATGGTGGAAATATAACTTTTCCGATTCTCATATTTACAAAAATTCCTTAAAACAGAGAAACYTTTTAAGATTTGCCTTTTTTCGGAGTTACGGTTTACCTGACGGTGTGTAGTTATTAGTTTTCACTTAGCTATCGTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19638</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>71370</contig_pos>
        <strand>+</strand>
        <context>TACGGTTTAC[C/G]TGACGGTGTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAACAGAGAAACTTTTTAAGATTTGCCTTTTTTCGGAGTTACGGTTTAC</left_flank>
        <right_flank>TGACGGTGTGTAGTTATTAGTTTTCACTTAGCTATCGTGCCGCTTTGCAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTTCTTTCTTCCCAAAACTGATCATTCTTTTTCACCTCAAATCCACTATAATCCTCTCGCAACGTCATATACGATATTTTAGCACCTGACCAAAAATCCTAAAATCTTTCAAAAAATAATGAAGCAATTGTCTCCGACGGATTATCGTAGTGGGTTTAAAAGCGGAATCGTCTTACCTTGTGCACATTCATTCTAAGATGGAGTTTATCGGTAGTGATATCGACCAAAGCTATAATTATGTGATTCGACACGGATTCCATTTGAACGAATGGTTTTATAATTGTACCGGAATCGATGGATTCGCATTGGGAGTTCCTCGGCCATGGCTTGGTTCTTATTTTCTGACAGTCGGAGTTGTTCTGATGGTAAGAGATCATAACTAATAAAGTTTTCACAACTATGGTGGAAATATAACTTTTCCGATTCTCATATTTACAAAAATTCCTTAAAACAGAGAAACTTTTTAAGATTTGCCTTTTTTCGGAGTTACGGTTTACCTGACGGTGTGTAGTTATTAGTTTTCACTTAGCTATCGTGCCGCTTTGCATATGATATGATATGATATCGGTCGGAAGCGCAGCACGAAAGCGCAGCACATAGCTCAGCTGGAAGCGACGCGGCACCGTTAGACCCACAAGTTCAAGTCCCCGACGGGCTCATATGAACAAAACTTTGATTAAATTATTTTTTCATGTCCCACCACCTTTCAAGTTTCACGTTAGAGGCTCCTACTATCATAGGTTTTACGGCAAAGCAGGTTGTTCGGAAACAACAAAAAACAACAAAAACAACAAAAAACAACAAAACCAATGAGCATAATGCTGAAATATCGATTCATAAGTTTACAAACATTCATTGAAACAGAAAGTTTTTGAAAATGTAACAGTCAAGAGTTGGTGGTGGAAAAAATCATCCCATACCGTATTTCCTCTGATAGATGTCCATCCCAACCGTCAAGTTCAATTATCTCTATTGAGTTCAATTATTTCTATTCTTGT</canonical>
            <polymorphic>TCTTTCTTTCTTCCCAAAACTGATCATTCTTTTTCACCTCAAATCCACTATAATCCTCTCGCAACGTCATATACGATATTTTAGCACCTGACCAAAAATCCTAAAATCTTTCAAAAAATAATGAAGCAATTGTCTCCGACGGATTATCGTAGTGGGTTTAAAAGCGGAATCGTCTTACCTTGTGCACATTCATTCTAAGATGGAGTTTATCGGTAGTGATATCGACCAAAGCTATAATTATGTGATTCGACACGGATTCCATTTGAACGAATGGTTTTATAATTGTACCGGAATCGATGGATTCGCATTGGGAGTTCCTCGGCCATGGCTTGGTTCTTATTTTCTGACAGTCGGAGTTGTTCTGATGGTAAGAGATCATAACTAATAAAGTTTTCACAACTATGGTGGAAATATAACTTTTCCGATTCTCATATTTACAAAAATTCCTTAAAACAGAGAAACTTTTTAAGATTTGCCTTTTTTCGGAGTTACGGTTTACSTGACGGTGTGTAGTTATTAGTTTTCACTTAGCTATCGTGCCGCTTTGCATATGATATGATATGATATCGGTCGGAAGCGCAGCACGAAAGCGCAGCACATAGCTCAGCTGGAAGCGACGCGGCACCGTTAGACCCACAAGTTCAAGTCCCCGACGGGCTCATATGAACAAAACTTTGATTAAATTATTTTTTCATGTCCCACCACCTTTCAAGTTTCACGTTAGAGGCTCCTACTATCATAGGTTTTACGGCAAAGCAGGTTGTTCGGAAACAACAAAAAACAACAAAAACAACAAAAAACAACAAAACCAATGAGCATAATGCTGAAATATCGATTCATAAGTTTACAAACATTCATTGAAACAGAAAGTTTTTGAAAATGTAACAGTCAAGAGTTGGTGGTGGAAAAAATCATCCCATACCGTATTTCCTCTGATAGATGTCCATCCCAACCGTCAAGTTCAATTATCTCTATTGAGTTCAATTATTTCTATTCTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAATTCCTTAAAACAGAGAA</pcr_primer_p1>
		<pcr_primer_p2>TAACGTGAAACTTGAAAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>286</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATTCCTTAAAACAGAGAAACTTTTTAAGATTTGCCTTTTTTCGGAGTTACGGTTTACCTGACGGTGTGTAGTTATTAGTTTTCACTTAGCTATCGTGCCGCTTTGCATATGATATGATATGATATCGGTCGGAAGCGCAGCACGAAAGCGCAGCACATAGCTCAGCTGGAAGCGACGCGGCACCGTTAGACCCACAAGTTCAAGTCCCCGACGGGCTCATATGAACAAAACTTTGATTAAATTATTTTTTCATGTCCCACCACCTTTCAAGTTTCACGTTA</canonical_amplicon>
		<polymorphic_amplicon>CAAAAATTCCTTAAAACAGAGAAACTTTTTAAGATTTGCCTTTTTTCGGAGTTACGGTTTACSTGACGGTGTGTAGTTATTAGTTTTCACTTAGCTATCGTGCCGCTTTGCATATGATATGATATGATATCGGTCGGAAGCGCAGCACGAAAGCGCAGCACATAGCTCAGCTGGAAGCGACGCGGCACCGTTAGACCCACAAGTTCAAGTCCCCGACGGGCTCATATGAACAAAACTTTGATTAAATTATTTTTTCATGTCCCACCACCTTTCAAGTTTCACGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19639</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>71390</contig_pos>
        <strand>+</strand>
        <context>GTAGTTATTA[A/G]TTTTCACTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTTGCCTTTTTTCGGAGTTACGGTTTACCTGACGGTGTGTAGTTATTA</left_flank>
        <right_flank>TTTTCACTTAGCTATCGTGCCGCTTTGCATATGATATGATATGATATCGG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATCATTCTTTTTCACCTCAAATCCACTATAATCCTCTCGCAACGTCATATACGATATTTTAGCACCTGACCAAAAATCCTAAAATCTTTCAAAAAATAATGAAGCAATTGTCTCCGACGGATTATCGTAGTGGGTTTAAAAGCGGAATCGTCTTACCTTGTGCACATTCATTCTAAGATGGAGTTTATCGGTAGTGATATCGACCAAAGCTATAATTATGTGATTCGACACGGATTCCATTTGAACGAATGGTTTTATAATTGTACCGGAATCGATGGATTCGCATTGGGAGTTCCTCGGCCATGGCTTGGTTCTTATTTTCTGACAGTCGGAGTTGTTCTGATGGTAAGAGATCATAACTAATAAAGTTTTCACAACTATGGTGGAAATATAACTTTTCCGATTCTCATATTTACAAAAATTCCTTAAAACAGAGAAACTTTTTAAGATTTGCCTTTTTTCGGAGTTACGGTTTACCTGACGGTGTGTAGTTATTAGTTTTCACTTAGCTATCGTGCCGCTTTGCATATGATATGATATGATATCGGTCGGAAGCGCAGCACGAAAGCGCAGCACATAGCTCAGCTGGAAGCGACGCGGCACCGTTAGACCCACAAGTTCAAGTCCCCGACGGGCTCATATGAACAAAACTTTGATTAAATTATTTTTTCATGTCCCACCACCTTTCAAGTTTCACGTTAGAGGCTCCTACTATCATAGGTTTTACGGCAAAGCAGGTTGTTCGGAAACAACAAAAAACAACAAAAACAACAAAAAACAACAAAACCAATGAGCATAATGCTGAAATATCGATTCATAAGTTTACAAACATTCATTGAAACAGAAAGTTTTTGAAAATGTAACAGTCAAGAGTTGGTGGTGGAAAAAATCATCCCATACCGTATTTCCTCTGATAGATGTCCATCCCAACCGTCAAGTTCAATTATCTCTATTGAGTTCAATTATTTCTATTCTTGTGCTGGACATCAAAAATATGT</canonical>
            <polymorphic>TGATCATTCTTTTTCACCTCAAATCCACTATAATCCTCTCGCAACGTCATATACGATATTTTAGCACCTGACCAAAAATCCTAAAATCTTTCAAAAAATAATGAAGCAATTGTCTCCGACGGATTATCGTAGTGGGTTTAAAAGCGGAATCGTCTTACCTTGTGCACATTCATTCTAAGATGGAGTTTATCGGTAGTGATATCGACCAAAGCTATAATTATGTGATTCGACACGGATTCCATTTGAACGAATGGTTTTATAATTGTACCGGAATCGATGGATTCGCATTGGGAGTTCCTCGGCCATGGCTTGGTTCTTATTTTCTGACAGTCGGAGTTGTTCTGATGGTAAGAGATCATAACTAATAAAGTTTTCACAACTATGGTGGAAATATAACTTTTCCGATTCTCATATTTACAAAAATTCCTTAAAACAGAGAAACTTTTTAAGATTTGCCTTTTTTCGGAGTTACGGTTTACCTGACGGTGTGTAGTTATTARTTTTCACTTAGCTATCGTGCCGCTTTGCATATGATATGATATGATATCGGTCGGAAGCGCAGCACGAAAGCGCAGCACATAGCTCAGCTGGAAGCGACGCGGCACCGTTAGACCCACAAGTTCAAGTCCCCGACGGGCTCATATGAACAAAACTTTGATTAAATTATTTTTTCATGTCCCACCACCTTTCAAGTTTCACGTTAGAGGCTCCTACTATCATAGGTTTTACGGCAAAGCAGGTTGTTCGGAAACAACAAAAAACAACAAAAACAACAAAAAACAACAAAACCAATGAGCATAATGCTGAAATATCGATTCATAAGTTTACAAACATTCATTGAAACAGAAAGTTTTTGAAAATGTAACAGTCAAGAGTTGGTGGTGGAAAAAATCATCCCATACCGTATTTCCTCTGATAGATGTCCATCCCAACCGTCAAGTTCAATTATCTCTATTGAGTTCAATTATTTCTATTCTTGTGCTGGACATCAAAAATATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAATTCCTTAAAACAGAGAA</pcr_primer_p1>
		<pcr_primer_p2>TAACGTGAAACTTGAAAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>286</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATTCCTTAAAACAGAGAAACTTTTTAAGATTTGCCTTTTTTCGGAGTTACGGTTTACCTGACGGTGTGTAGTTATTAGTTTTCACTTAGCTATCGTGCCGCTTTGCATATGATATGATATGATATCGGTCGGAAGCGCAGCACGAAAGCGCAGCACATAGCTCAGCTGGAAGCGACGCGGCACCGTTAGACCCACAAGTTCAAGTCCCCGACGGGCTCATATGAACAAAACTTTGATTAAATTATTTTTTCATGTCCCACCACCTTTCAAGTTTCACGTTA</canonical_amplicon>
		<polymorphic_amplicon>CAAAAATTCCTTAAAACAGAGAAACTTTTTAAGATTTGCCTTTTTTCGGAGTTACGGTTTACCTGACGGTGTGTAGTTATTARTTTTCACTTAGCTATCGTGCCGCTTTGCATATGATATGATATGATATCGGTCGGAAGCGCAGCACGAAAGCGCAGCACATAGCTCAGCTGGAAGCGACGCGGCACCGTTAGACCCACAAGTTCAAGTCCCCGACGGGCTCATATGAACAAAACTTTGATTAAATTATTTTTTCATGTCCCACCACCTTTCAAGTTTCACGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19640</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>71416</contig_pos>
        <strand>+</strand>
        <context>CGTGCCGCTT[A/T]KCATATGATA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTACCTGACGGTGTGTAGTTATTAGTTTTCACTTAGCTATCGTGCCGCTT</left_flank>
        <right_flank>GCATATGATATGATATGATATCGGTCGGAAGCGCAGCACGAAAGCGCAGC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTATAATCCTCTCGCAACGTCATATACGATATTTTAGCACCTGACCAAAAATCCTAAAATCTTTCAAAAAATAATGAAGCAATTGTCTCCGACGGATTATCGTAGTGGGTTTAAAAGCGGAATCGTCTTACCTTGTGCACATTCATTCTAAGATGGAGTTTATCGGTAGTGATATCGACCAAAGCTATAATTATGTGATTCGACACGGATTCCATTTGAACGAATGGTTTTATAATTGTACCGGAATCGATGGATTCGCATTGGGAGTTCCTCGGCCATGGCTTGGTTCTTATTTTCTGACAGTCGGAGTTGTTCTGATGGTAAGAGATCATAACTAATAAAGTTTTCACAACTATGGTGGAAATATAACTTTTCCGATTCTCATATTTACAAAAATTCCTTAAAACAGAGAAACTTTTTAAGATTTGCCTTTTTTCGGAGTTACGGTTTACCTGACGGTGTGTAGTTATTAGTTTTCACTTAGCTATCGTGCCGCTTTGCATATGATATGATATGATATCGGTCGGAAGCGCAGCACGAAAGCGCAGCACATAGCTCAGCTGGAAGCGACGCGGCACCGTTAGACCCACAAGTTCAAGTCCCCGACGGGCTCATATGAACAAAACTTTGATTAAATTATTTTTTCATGTCCCACCACCTTTCAAGTTTCACGTTAGAGGCTCCTACTATCATAGGTTTTACGGCAAAGCAGGTTGTTCGGAAACAACAAAAAACAACAAAAACAACAAAAAACAACAAAACCAATGAGCATAATGCTGAAATATCGATTCATAAGTTTACAAACATTCATTGAAACAGAAAGTTTTTGAAAATGTAACAGTCAAGAGTTGGTGGTGGAAAAAATCATCCCATACCGTATTTCCTCTGATAGATGTCCATCCCAACCGTCAAGTTCAATTATCTCTATTGAGTTCAATTATTTCTATTCTTGTGCTGGACATCAAAAATATGTCAACTGATAAAATGTTTGGGGTCCCA</canonical>
            <polymorphic>ACTATAATCCTCTCGCAACGTCATATACGATATTTTAGCACCTGACCAAAAATCCTAAAATCTTTCAAAAAATAATGAAGCAATTGTCTCCGACGGATTATCGTAGTGGGTTTAAAAGCGGAATCGTCTTACCTTGTGCACATTCATTCTAAGATGGAGTTTATCGGTAGTGATATCGACCAAAGCTATAATTATGTGATTCGACACGGATTCCATTTGAACGAATGGTTTTATAATTGTACCGGAATCGATGGATTCGCATTGGGAGTTCCTCGGCCATGGCTTGGTTCTTATTTTCTGACAGTCGGAGTTGTTCTGATGGTAAGAGATCATAACTAATAAAGTTTTCACAACTATGGTGGAAATATAACTTTTCCGATTCTCATATTTACAAAAATTCCTTAAAACAGAGAAACTTTTTAAGATTTGCCTTTTTTCGGAGTTACGGTTTACCTGACGGTGTGTAGTTATTAGTTTTCACTTAGCTATCGTGCCGCTTWGCATATGATATGATATGATATCGGTCGGAAGCGCAGCACGAAAGCGCAGCACATAGCTCAGCTGGAAGCGACGCGGCACCGTTAGACCCACAAGTTCAAGTCCCCGACGGGCTCATATGAACAAAACTTTGATTAAATTATTTTTTCATGTCCCACCACCTTTCAAGTTTCACGTTAGAGGCTCCTACTATCATAGGTTTTACGGCAAAGCAGGTTGTTCGGAAACAACAAAAAACAACAAAAACAACAAAAAACAACAAAACCAATGAGCATAATGCTGAAATATCGATTCATAAGTTTACAAACATTCATTGAAACAGAAAGTTTTTGAAAATGTAACAGTCAAGAGTTGGTGGTGGAAAAAATCATCCCATACCGTATTTCCTCTGATAGATGTCCATCCCAACCGTCAAGTTCAATTATCTCTATTGAGTTCAATTATTTCTATTCTTGTGCTGGACATCAAAAATATGTCAACTGATAAAATGTTTGGGGTCCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>499 363 138</canonical_bands>
                <polymorphic_bands>862 138</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCGGAGTTACGGTTTAC</pcr_primer_p1>
		<pcr_primer_p2>TAACGTGAAACTTGAAAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCGGAGTTACGGTTTACCTGACGGTGTGTAGTTATTAGTTTTCACTTAGCTATCGTGCCGCTTTGCATATGATATGATATGATATCGGTCGGAAGCGCAGCACGAAAGCGCAGCACATAGCTCAGCTGGAAGCGACGCGGCACCGTTAGACCCACAAGTTCAAGTCCCCGACGGGCTCATATGAACAAAACTTTGATTAAATTATTTTTTCATGTCCCACCACCTTTCAAGTTTCACGTTA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCGGAGTTACGGTTTACCTGACGGTGTGTAGTTATTAGTTTTCACTTAGCTATCGTGCCGCTTWGCATATGATATGATATGATATCGGTCGGAAGCGCAGCACGAAAGCGCAGCACATAGCTCAGCTGGAAGCGACGCGGCACCGTTAGACCCACAAGTTCAAGTCCCCGACGGGCTCATATGAACAAAACTTTGATTAAATTATTTTTTCATGTCCCACCACCTTTCAAGTTTCACGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19641</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>71417</contig_pos>
        <strand>+</strand>
        <context>GTGCCGCTTW[G/T]CATATGATAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TACCTGACGGTGTGTAGTTATTAGTTTTCACTTAGCTATCGTGCCGCTTT</left_flank>
        <right_flank>CATATGATATGATATGATATCGGTCGGAAGCGCAGCACGAAAGCGCAGCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATAATCCTCTCGCAACGTCATATACGATATTTTAGCACCTGACCAAAAATCCTAAAATCTTTCAAAAAATAATGAAGCAATTGTCTCCGACGGATTATCGTAGTGGGTTTAAAAGCGGAATCGTCTTACCTTGTGCACATTCATTCTAAGATGGAGTTTATCGGTAGTGATATCGACCAAAGCTATAATTATGTGATTCGACACGGATTCCATTTGAACGAATGGTTTTATAATTGTACCGGAATCGATGGATTCGCATTGGGAGTTCCTCGGCCATGGCTTGGTTCTTATTTTCTGACAGTCGGAGTTGTTCTGATGGTAAGAGATCATAACTAATAAAGTTTTCACAACTATGGTGGAAATATAACTTTTCCGATTCTCATATTTACAAAAATTCCTTAAAACAGAGAAACTTTTTAAGATTTGCCTTTTTTCGGAGTTACGGTTTACCTGACGGTGTGTAGTTATTAGTTTTCACTTAGCTATCGTGCCGCTTTGCATATGATATGATATGATATCGGTCGGAAGCGCAGCACGAAAGCGCAGCACATAGCTCAGCTGGAAGCGACGCGGCACCGTTAGACCCACAAGTTCAAGTCCCCGACGGGCTCATATGAACAAAACTTTGATTAAATTATTTTTTCATGTCCCACCACCTTTCAAGTTTCACGTTAGAGGCTCCTACTATCATAGGTTTTACGGCAAAGCAGGTTGTTCGGAAACAACAAAAAACAACAAAAACAACAAAAAACAACAAAACCAATGAGCATAATGCTGAAATATCGATTCATAAGTTTACAAACATTCATTGAAACAGAAAGTTTTTGAAAATGTAACAGTCAAGAGTTGGTGGTGGAAAAAATCATCCCATACCGTATTTCCTCTGATAGATGTCCATCCCAACCGTCAAGTTCAATTATCTCTATTGAGTTCAATTATTTCTATTCTTGTGCTGGACATCAAAAATATGTCAACTGATAAAATGTTTGGGGTCCCAC</canonical>
            <polymorphic>CTATAATCCTCTCGCAACGTCATATACGATATTTTAGCACCTGACCAAAAATCCTAAAATCTTTCAAAAAATAATGAAGCAATTGTCTCCGACGGATTATCGTAGTGGGTTTAAAAGCGGAATCGTCTTACCTTGTGCACATTCATTCTAAGATGGAGTTTATCGGTAGTGATATCGACCAAAGCTATAATTATGTGATTCGACACGGATTCCATTTGAACGAATGGTTTTATAATTGTACCGGAATCGATGGATTCGCATTGGGAGTTCCTCGGCCATGGCTTGGTTCTTATTTTCTGACAGTCGGAGTTGTTCTGATGGTAAGAGATCATAACTAATAAAGTTTTCACAACTATGGTGGAAATATAACTTTTCCGATTCTCATATTTACAAAAATTCCTTAAAACAGAGAAACTTTTTAAGATTTGCCTTTTTTCGGAGTTACGGTTTACCTGACGGTGTGTAGTTATTAGTTTTCACTTAGCTATCGTGCCGCTTTKCATATGATATGATATGATATCGGTCGGAAGCGCAGCACGAAAGCGCAGCACATAGCTCAGCTGGAAGCGACGCGGCACCGTTAGACCCACAAGTTCAAGTCCCCGACGGGCTCATATGAACAAAACTTTGATTAAATTATTTTTTCATGTCCCACCACCTTTCAAGTTTCACGTTAGAGGCTCCTACTATCATAGGTTTTACGGCAAAGCAGGTTGTTCGGAAACAACAAAAAACAACAAAAACAACAAAAAACAACAAAACCAATGAGCATAATGCTGAAATATCGATTCATAAGTTTACAAACATTCATTGAAACAGAAAGTTTTTGAAAATGTAACAGTCAAGAGTTGGTGGTGGAAAAAATCATCCCATACCGTATTTCCTCTGATAGATGTCCATCCCAACCGTCAAGTTCAATTATCTCTATTGAGTTCAATTATTTCTATTCTTGTGCTGGACATCAAAAATATGTCAACTGATAAAATGTTTGGGGTCCCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 363 137</canonical_bands>
                <polymorphic_bands>863 137</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCGGAGTTACGGTTTAC</pcr_primer_p1>
		<pcr_primer_p2>TAACGTGAAACTTGAAAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCGGAGTTACGGTTTACCTGACGGTGTGTAGTTATTAGTTTTCACTTAGCTATCGTGCCGCTTTGCATATGATATGATATGATATCGGTCGGAAGCGCAGCACGAAAGCGCAGCACATAGCTCAGCTGGAAGCGACGCGGCACCGTTAGACCCACAAGTTCAAGTCCCCGACGGGCTCATATGAACAAAACTTTGATTAAATTATTTTTTCATGTCCCACCACCTTTCAAGTTTCACGTTA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCGGAGTTACGGTTTACCTGACGGTGTGTAGTTATTAGTTTTCACTTAGCTATCGTGCCGCTTTKCATATGATATGATATGATATCGGTCGGAAGCGCAGCACGAAAGCGCAGCACATAGCTCAGCTGGAAGCGACGCGGCACCGTTAGACCCACAAGTTCAAGTCCCCGACGGGCTCATATGAACAAAACTTTGATTAAATTATTTTTTCATGTCCCACCACCTTTCAAGTTTCACGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19642</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>73974</contig_pos>
        <strand>+</strand>
        <context>GAGGTTTAGG[C/T]TCTGGGGTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGAACTTGTTTCATTGGGGCTTCTGGAAATGGAAAAGATGAGGTTTAGG</left_flank>
        <right_flank>TCTGGGGTGGTTTCAAAGATTCTTGGAGTTTTGGAATTGATATTTTGAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAAACTGAAAATATAACTCTTCAAATTTTGATCATTAGAGCGCAATTACTTCGTCAAGTGATTGAAGAACTCCCAAGATGTAGACATCACACCAGTGGATGGATTTTCCGACGAAATAGTCTCCCTTGCTCTTCTTCAACAGGTCTTGCATGATTTCCAGCTTTCCTGGCATCGTGTCCTTGTAGTGTTTTTGAAAACCCTCCTGGAAAATGAAGAAAATTTCATTTGAAAATTTGATCTTCTCACTTTGATGCTATCCGGAGCATACTTTGCCATGGCGGCCAACTGGAATAGATCCGCAAATCCATCAGCCATCATGTCCACTTTGGCCGAGTCGGTCTTCGTGGCACCGCCCAGCCATCTATCTGGATGAACTGATTTGGCCAGGTAACGACAGATGGAAACCGTTTGGCAGAGAGTGACTTTGCCTCCGTCTATTTCGATGAATGGAACTTGTTTCATTGGGGCTTCTGGAAATGGAAAAGATGAGGTTTAGGTTCTGGGGTGGTTTCAAAGATTCTTGGAGTTTTGGAATTGATATTTTGAATTTTGGATATTAAATGTTCGGAACCCTTGAAATATATAAATGTTGGAAGTTCCACCTGGGAATATCAAAATCTCTGAAATTATTCAAGTTTCTCAACTTTTCTTCAATTTGAAAAATGATCTGAGTTTTATTTCGAATTTTTCGAGTTTTCAAGACTTAAATGCTGAAAATCCAGAATATTGGAACTTTGGTATTTTAGAATATTGAAATTCAAGAATCTTTGGGTGAAGGAATTTACAAATTTGGAAATCTGAGAATTTCTGAGTTTCAGAGTTTTTCAAAATTTCCGAATTTTCTAAATTTTGTAATTCAAGTTAAAAAAACAATCAATTAGGAATTTCAAACTATTGAAATTTCAGACTCTTCTGGTCTGAGAATCTCAGGATCTGAAAATTTCAATTTTTTGAATTTATGAATTTCTGAATTTTCTGGTTGTTCTAAATTTTTTAAT</canonical>
            <polymorphic>ATCAAACTGAAAATATAACTCTTCAAATTTTGATCATTAGAGCGCAATTACTTCGTCAAGTGATTGAAGAACTCCCAAGATGTAGACATCACACCAGTGGATGGATTTTCCGACGAAATAGTCTCCCTTGCTCTTCTTCAACAGGTCTTGCATGATTTCCAGCTTTCCTGGCATCGTGTCCTTGTAGTGTTTTTGAAAACCCTCCTGGAAAATGAAGAAAATTTCATTTGAAAATTTGATCTTCTCACTTTGATGCTATCCGGAGCATACTTTGCCATGGCGGCCAACTGGAATAGATCCGCAAATCCATCAGCCATCATGTCCACTTTGGCCGAGTCGGTCTTCGTGGCACCGCCCAGCCATCTATCTGGATGAACTGATTTGGCCAGGTAACGACAGATGGAAACCGTTTGGCAGAGAGTGACTTTGCCTCCGTCTATTTCGATGAATGGAACTTGTTTCATTGGGGCTTCTGGAAATGGAAAAGATGAGGTTTAGGYTCTGGGGTGGTTTCAAAGATTCTTGGAGTTTTGGAATTGATATTTTGAATTTTGGATATTAAATGTTCGGAACCCTTGAAATATATAAATGTTGGAAGTTCCACCTGGGAATATCAAAATCTCTGAAATTATTCAAGTTTCTCAACTTTTCTTCAATTTGAAAAATGATCTGAGTTTTATTTCGAATTTTTCGAGTTTTCAAGACTTAAATGCTGAAAATCCAGAATATTGGAACTTTGGTATTTTAGAATATTGAAATTCAAGAATCTTTGGGTGAAGGAATTTACAAATTTGGAAATCTGAGAATTTCTGAGTTTCAGAGTTTTTCAAAATTTCCGAATTTTCTAAATTTTGTAATTCAAGTTAAAAAAACAATCAATTAGGAATTTCAAACTATTGAAATTTCAGACTCTTCTGGTCTGAGAATCTCAGGATCTGAAAATTTCAATTTTTTGAATTTATGAATTTCTGAATTTTCTGGTTGTTCTAAATTTTTTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTCGATGAATGGAACTTGT</pcr_primer_p1>
		<pcr_primer_p2>TTCGAAATAAAACTCAGATCATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATTTCGATGAATGGAACTTGTTTCATTGGGGCTTCTGGAAATGGAAAAGATGAGGTTTAGGTTCTGGGGTGGTTTCAAAGATTCTTGGAGTTTTGGAATTGATATTTTGAATTTTGGATATTAAATGTTCGGAACCCTTGAAATATATAAATGTTGGAAGTTCCACCTGGGAATATCAAAATCTCTGAAATTATTCAAGTTTCTCAACTTTTCTTCAATTTGAAAAATGATCTGAGTTTTATTTCGAA</canonical_amplicon>
		<polymorphic_amplicon>TATTTCGATGAATGGAACTTGTTTCATTGGGGCTTCTGGAAATGGAAAAGATGAGGTTTAGGYTCTGGGGTGGTTTCAAAGATTCTTGGAGTTTTGGAATTGATATTTTGAATTTTGGATATTAAATGTTCGGAACCCTTGAAATATATAAATGTTGGAAGTTCCACCTGGGAATATCAAAATCTCTGAAATTATTCAAGTTTCTCAACTTTTCTTCAATTTGAAAAATGATCTGAGTTTTATTTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19643</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>73759</contig_pos>
        <strand>+</strand>
        <context>CCATGGCGGC[C/T]AACTGGAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGATCTTCTCACTTTGATGCTATCCGGAGCATACTTTGCCATGGCGGC</left_flank>
        <right_flank>AACTGGAATAGATCCGCAAATCCATCAGCCATCATGTCCACTTTGGCCGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTTGAAAAAAAATACACATGTGCCCAAATATTAATACTTTATTTGACACAAATAAATGAAAAATCACAAAAGTTGAAAACCATGAAATGATCCATTAAGCCTTATACTTGGTCTCCGGCCAGTTGGCATCAATGTACTCCTTGAGCTCTGGCAGATTACGCATTCTCAGATAGTAGGCTTGCAGTTCTGGGAACTTTTCGAACACCTCGTCATCAAACTGAAAATATAACTCTTCAAATTTTGATCATTAGAGCGCAATTACTTCGTCAAGTGATTGAAGAACTCCCAAGATGTAGACATCACACCAGTGGATGGATTTTCCGACGAAATAGTCTCCCTTGCTCTTCTTCAACAGGTCTTGCATGATTTCCAGCTTTCCTGGCATCGTGTCCTTGTAGTGTTTTTGAAAACCCTCCTGGAAAATGAAGAAAATTTCATTTGAAAATTTGATCTTCTCACTTTGATGCTATCCGGAGCATACTTTGCCATGGCGGCCAACTGGAATAGATCCGCAAATCCATCAGCCATCATGTCCACTTTGGCCGAGTCGGTCTTCGTGGCACCGCCCAGCCATCTATCTGGATGAACTGATTTGGCCAGGTAACGACAGATGGAAACCGTTTGGCAGAGAGTGACTTTGCCTCCGTCTATTTCGATGAATGGAACTTGTTTCATTGGGGCTTCTGGAAATGGAAAAGATGAGGTTTAGGTTCTGGGGTGGTTTCAAAGATTCTTGGAGTTTTGGAATTGATATTTTGAATTTTGGATATTAAATGTTCGGAACCCTTGAAATATATAAATGTTGGAAGTTCCACCTGGGAATATCAAAATCTCTGAAATTATTCAAGTTTCTCAACTTTTCTTCAATTTGAAAAATGATCTGAGTTTTATTTCGAATTTTTCGAGTTTTCAAGACTTAAATGCTGAAAATCCAGAATATTGGAACTTTGGTATTTTAGAATATTGAAATTCAAGAATCTTTGGGTGAAGGAATTT</canonical>
            <polymorphic>AAATTTTGAAAAAAAATACACATGTGCCCAAATATTAATACTTTATTTGACACAAATAAATGAAAAATCACAAAAGTTGAAAACCATGAAATGATCCATTAAGCCTTATACTTGGTCTCCGGCCAGTTGGCATCAATGTACTCCTTGAGCTCTGGCAGATTACGCATTCTCAGATAGTAGGCTTGCAGTTCTGGGAACTTTTCGAACACCTCGTCATCAAACTGAAAATATAACTCTTCAAATTTTGATCATTAGAGCGCAATTACTTCGTCAAGTGATTGAAGAACTCCCAAGATGTAGACATCACACCAGTGGATGGATTTTCCGACGAAATAGTCTCCCTTGCTCTTCTTCAACAGGTCTTGCATGATTTCCAGCTTTCCTGGCATCGTGTCCTTGTAGTGTTTTTGAAAACCCTCCTGGAAAATGAAGAAAATTTCATTTGAAAATTTGATCTTCTCACTTTGATGCTATCCGGAGCATACTTTGCCATGGCGGCYAACTGGAATAGATCCGCAAATCCATCAGCCATCATGTCCACTTTGGCCGAGTCGGTCTTCGTGGCACCGCCCAGCCATCTATCTGGATGAACTGATTTGGCCAGGTAACGACAGATGGAAACCGTTTGGCAGAGAGTGACTTTGCCTCCGTCTATTTCGATGAATGGAACTTGTTTCATTGGGGCTTCTGGAAATGGAAAAGATGAGGTTTAGGTTCTGGGGTGGTTTCAAAGATTCTTGGAGTTTTGGAATTGATATTTTGAATTTTGGATATTAAATGTTCGGAACCCTTGAAATATATAAATGTTGGAAGTTCCACCTGGGAATATCAAAATCTCTGAAATTATTCAAGTTTCTCAACTTTTCTTCAATTTGAAAAATGATCTGAGTTTTATTTCGAATTTTTCGAGTTTTCAAGACTTAAATGCTGAAAATCCAGAATATTGGAACTTTGGTATTTTAGAATATTGAAATTCAAGAATCTTTGGGTGAAGGAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>400 376 122 54 48</canonical_bands>
                <polymorphic_bands>424 400 122 54</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>402 376 120 54 48</canonical_bands>
                <polymorphic_bands>424 402 120 54</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>316 196 121 103 84 32 30 28 27 26 19 18</canonical_bands>
                <polymorphic_bands>316 196 151 103 84 32 28 27 26 19 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATTTGAAAATTTGATCTTCTC</pcr_primer_p1>
		<pcr_primer_p2>AGTTCCATTCATCGAAATAGAC</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>TCATTTGAAAATTTGATCTTCTCACTTTGATGCTATCCGGAGCATACTTTGCCATGGCGGCCAACTGGAATAGATCCGCAAATCCATCAGCCATCATGTCCACTTTGGCCGAGTCGGTCTTCGTGGCACCGCCCAGCCATCTATCTGGATGAACTGATTTGGCCAGGTAACGACAGATGGAAACCGTTTGGCAGAGAGTGACTTTGCCTCCGTCTATTTCGATGAATGGAACT</canonical_amplicon>
		<polymorphic_amplicon>TCATTTGAAAATTTGATCTTCTCACTTTGATGCTATCCGGAGCATACTTTGCCATGGCGGCYAACTGGAATAGATCCGCAAATCCATCAGCCATCATGTCCACTTTGGCCGAGTCGGTCTTCGTGGCACCGCCCAGCCATCTATCTGGATGAACTGATTTGGCCAGGTAACGACAGATGGAAACCGTTTGGCAGAGAGTGACTTTGCCTCCGTCTATTTCGATGAATGGAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19654</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>60272</contig_pos>
        <strand>+</strand>
        <context>ACGATTATCA[A/T]TTGGAAGAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGAGTAACATTAAGATGAGAGAAAAACTCAATCTTTCGAACGATTATCA</left_flank>
        <right_flank>TTGGAAGAACTACAGGTGAGAATCTGATTCGTCTAAACTCATCAACAATT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTCTTCGCGTCGTCATAAATGTCCACCATACGAATGGGTTAAAGGGACCTTTGAAACGTTTTGATATTTCGAATTCCGAATGCTCAGATTGTATAGTACAGGTTGAAGAAGAAGAGTTTTATGTGTCTAAATCAGTGAGTTTGTTTTAATATGCTGCCCATGATTTGAAAAGTTACAGTATCTGCTCAGCCAGTGTCCTAAACTGTTCTACAAGACCCAACCTGATAGATTAAAAGTATACCGTGTGCATCCAACAATTTTTCAAGACTTTCTAGAAGTTCTACATGCCGTGCCAGGATCTATCATGGGTAACCAAAAACGAAAAAAAGTTACATCGTTGATCTGTGGTTTTTTACAGACCACAACATTGGACGCATTCTTTCTTTCGCCTTTTTCTGTGGAGCTCGAACTGTGCTTGAAAAATGCGAACATTACTTGTTAAATGCCGAGAGTAACATTAAGATGAGAGAAAAACTCAATCTTTCGAACGATTATCATTTGGAAGAACTACAGGTGAGAATCTGATTCGTCTAAACTCATCAACAATTTTCAGGATTCGTTGGTTGATCGAATTACTGATGCCAAATTTCTCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTATATAATGTCGAGAAAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCC</canonical>
            <polymorphic>ACTTCTTCGCGTCGTCATAAATGTCCACCATACGAATGGGTTAAAGGGACCTTTGAAACGTTTTGATATTTCGAATTCCGAATGCTCAGATTGTATAGTACAGGTTGAAGAAGAAGAGTTTTATGTGTCTAAATCAGTGAGTTTGTTTTAATATGCTGCCCATGATTTGAAAAGTTACAGTATCTGCTCAGCCAGTGTCCTAAACTGTTCTACAAGACCCAACCTGATAGATTAAAAGTATACCGTGTGCATCCAACAATTTTTCAAGACTTTCTAGAAGTTCTACATGCCGTGCCAGGATCTATCATGGGTAACCAAAAACGAAAAAAAGTTACATCGTTGATCTGTGGTTTTTTACAGACCACAACATTGGACGCATTCTTTCTTTCGCCTTTTTCTGTGGAGCTCGAACTGTGCTTGAAAAATGCGAACATTACTTGTTAAATGCCGAGAGTAACATTAAGATGAGAGAAAAACTCAATCTTTCGAACGATTATCAWTTGGAAGAACTACAGGTGAGAATCTGATTCGTCTAAACTCATCAACAATTTTCAGGATTCGTTGGTTGATCGAATTACTGATGCCAAATTTCTCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTATATAATGTCGAGAAAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGCGAACATTACTTGTTAAA</pcr_primer_p1>
		<pcr_primer_p2>ACCTCCATTCTATCCAATACTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATGCGAACATTACTTGTTAAATGCCGAGAGTAACATTAAGATGAGAGAAAAACTCAATCTTTCGAACGATTATCATTTGGAAGAACTACAGGTGAGAATCTGATTCGTCTAAACTCATCAACAATTTTCAGGATTCGTTGGTTGATCGAATTACTGATGCCAAATTTCTCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTATATAATGTCGAGAAAAGTATTGGATAGAATGGAGGT</canonical_amplicon>
		<polymorphic_amplicon>AAATGCGAACATTACTTGTTAAATGCCGAGAGTAACATTAAGATGAGAGAAAAACTCAATCTTTCGAACGATTATCAWTTGGAAGAACTACAGGTGAGAATCTGATTCGTCTAAACTCATCAACAATTTTCAGGATTCGTTGGTTGATCGAATTACTGATGCCAAATTTCTCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTATATAATGTCGAGAAAAGTATTGGATAGAATGGAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19655</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>60357</contig_pos>
        <strand>+</strand>
        <context>TTACTGATGC[C/T]AAATTTCTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACTCATCAACAATTTTCAGGATTCGTTGGTTGATCGAATTACTGATGC</left_flank>
        <right_flank>AAATTTCTCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGATTGTATAGTACAGGTTGAAGAAGAAGAGTTTTATGTGTCTAAATCAGTGAGTTTGTTTTAATATGCTGCCCATGATTTGAAAAGTTACAGTATCTGCTCAGCCAGTGTCCTAAACTGTTCTACAAGACCCAACCTGATAGATTAAAAGTATACCGTGTGCATCCAACAATTTTTCAAGACTTTCTAGAAGTTCTACATGCCGTGCCAGGATCTATCATGGGTAACCAAAAACGAAAAAAAGTTACATCGTTGATCTGTGGTTTTTTACAGACCACAACATTGGACGCATTCTTTCTTTCGCCTTTTTCTGTGGAGCTCGAACTGTGCTTGAAAAATGCGAACATTACTTGTTAAATGCCGAGAGTAACATTAAGATGAGAGAAAAACTCAATCTTTCGAACGATTATCATTTGGAAGAACTACAGGTGAGAATCTGATTCGTCTAAACTCATCAACAATTTTCAGGATTCGTTGGTTGATCGAATTACTGATGCCAAATTTCTCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTATATAATGTCGAGAAAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTT</canonical>
            <polymorphic>TCAGATTGTATAGTACAGGTTGAAGAAGAAGAGTTTTATGTGTCTAAATCAGTGAGTTTGTTTTAATATGCTGCCCATGATTTGAAAAGTTACAGTATCTGCTCAGCCAGTGTCCTAAACTGTTCTACAAGACCCAACCTGATAGATTAAAAGTATACCGTGTGCATCCAACAATTTTTCAAGACTTTCTAGAAGTTCTACATGCCGTGCCAGGATCTATCATGGGTAACCAAAAACGAAAAAAAGTTACATCGTTGATCTGTGGTTTTTTACAGACCACAACATTGGACGCATTCTTTCTTTCGCCTTTTTCTGTGGAGCTCGAACTGTGCTTGAAAAATGCGAACATTACTTGTTAAATGCCGAGAGTAACATTAAGATGAGAGAAAAACTCAATCTTTCGAACGATTATCATTTGGAAGAACTACAGGTGAGAATCTGATTCGTCTAAACTCATCAACAATTTTCAGGATTCGTTGGTTGATCGAATTACTGATGCYAAATTTCTCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTATATAATGTCGAGAAAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGCGAACATTACTTGTTAAA</pcr_primer_p1>
		<pcr_primer_p2>ACCTCCATTCTATCCAATACTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATGCGAACATTACTTGTTAAATGCCGAGAGTAACATTAAGATGAGAGAAAAACTCAATCTTTCGAACGATTATCATTTGGAAGAACTACAGGTGAGAATCTGATTCGTCTAAACTCATCAACAATTTTCAGGATTCGTTGGTTGATCGAATTACTGATGCCAAATTTCTCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTATATAATGTCGAGAAAAGTATTGGATAGAATGGAGGT</canonical_amplicon>
		<polymorphic_amplicon>AAATGCGAACATTACTTGTTAAATGCCGAGAGTAACATTAAGATGAGAGAAAAACTCAATCTTTCGAACGATTATCATTTGGAAGAACTACAGGTGAGAATCTGATTCGTCTAAACTCATCAACAATTTTCAGGATTCGTTGGTTGATCGAATTACTGATGCYAAATTTCTCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTATATAATGTCGAGAAAAGTATTGGATAGAATGGAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19656</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>60597</contig_pos>
        <strand>+</strand>
        <context>attAAAACAC[C/G]GTGAAACACC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACAC</left_flank>
        <right_flank>GTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAGTTACATCGTTGATCTGTGGTTTTTTACAGACCACAACATTGGACGCATTCTTTCTTTCGCCTTTTTCTGTGGAGCTCGAACTGTGCTTGAAAAATGCGAACATTACTTGTTAAATGCCGAGAGTAACATTAAGATGAGAGAAAAACTCAATCTTTCGAACGATTATCATTTGGAAGAACTACAGGTGAGAATCTGATTCGTCTAAACTCATCAACAATTTTCAGGATTCGTTGGTTGATCGAATTACTGATGCCAAATTTCTCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTATATAATGTCGAGAAAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTTTCCTGGGTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTTCCATACGATTTTCAGTGATTTAGAAATTGGTTACAAGGTTTTGAGTTTGGATCTTTTTGGTGAGTTATTCTGCAAGGTCAAAGTTAAGTTCATAAGAAAATTTTAATTTCTTATAACCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGGCACAGTACAGTC</canonical>
            <polymorphic>AAAAAGTTACATCGTTGATCTGTGGTTTTTTACAGACCACAACATTGGACGCATTCTTTCTTTCGCCTTTTTCTGTGGAGCTCGAACTGTGCTTGAAAAATGCGAACATTACTTGTTAAATGCCGAGAGTAACATTAAGATGAGAGAAAAACTCAATCTTTCGAACGATTATCATTTGGAAGAACTACAGGTGAGAATCTGATTCGTCTAAACTCATCAACAATTTTCAGGATTCGTTGGTTGATCGAATTACTGATGCCAAATTTCTCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTATATAATGTCGAGAAAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACSGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTTTCCTGGGTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTTCCATACGATTTTCAGTGATTTAGAAATTGGTTACAAGGTTTTGAGTTTGGATCTTTTTGGTGAGTTATTCTGCAAGGTCAAAGTTAAGTTCATAAGAAAATTTTAATTTCTTATAACCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGGCACAGTACAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGTATTGGATAGAATGGAGGT</pcr_primer_p1>
		<pcr_primer_p2>AGACAGGGAATTGAACTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCT</canonical_amplicon>
		<polymorphic_amplicon>AAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACSGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19659</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>60697</contig_pos>
        <strand>+</strand>
        <context>CCTTCTAAAA[A/T]WCCCTTTGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAA</left_flank>
        <right_flank>ACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCGAACATTACTTGTTAAATGCCGAGAGTAACATTAAGATGAGAGAAAAACTCAATCTTTCGAACGATTATCATTTGGAAGAACTACAGGTGAGAATCTGATTCGTCTAAACTCATCAACAATTTTCAGGATTCGTTGGTTGATCGAATTACTGATGCCAAATTTCTCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTATATAATGTCGAGAAAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTTTCCTGGGTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTTCCATACGATTTTCAGTGATTTAGAAATTGGTTACAAGGTTTTGAGTTTGGATCTTTTTGGTGAGTTATTCTGCAAGGTCAAAGTTAAGTTCATAAGAAAATTTTAATTTCTTATAACCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGGCACAGTACAGTCAGAAAATAACAATGGACACCAAACCATAACTCTCTGTTACGGTACAAGCGAGAAAGCGACCGTTCTTCCAAGCGGCGCCGACTCCTCGTTTCATAATCGT</canonical>
            <polymorphic>TGCGAACATTACTTGTTAAATGCCGAGAGTAACATTAAGATGAGAGAAAAACTCAATCTTTCGAACGATTATCATTTGGAAGAACTACAGGTGAGAATCTGATTCGTCTAAACTCATCAACAATTTTCAGGATTCGTTGGTTGATCGAATTACTGATGCCAAATTTCTCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTATATAATGTCGAGAAAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAAWACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTTTCCTGGGTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTTCCATACGATTTTCAGTGATTTAGAAATTGGTTACAAGGTTTTGAGTTTGGATCTTTTTGGTGAGTTATTCTGCAAGGTCAAAGTTAAGTTCATAAGAAAATTTTAATTTCTTATAACCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGGCACAGTACAGTCAGAAAATAACAATGGACACCAAACCATAACTCTCTGTTACGGTACAAGCGAGAAAGCGACCGTTCTTCCAAGCGGCGCCGACTCCTCGTTTCATAATCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACACCTGCTCAGTAGATGATAA</pcr_primer_p1>
		<pcr_primer_p2>GATAAATGTGAAGAAAAATTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATC</canonical_amplicon>
		<polymorphic_amplicon>AACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAAWACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19660</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>60698</contig_pos>
        <strand>+</strand>
        <context>CTTCTAAAAW[A/T]CCCTTTGATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAAT</left_flank>
        <right_flank>CCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGAACATTACTTGTTAAATGCCGAGAGTAACATTAAGATGAGAGAAAAACTCAATCTTTCGAACGATTATCATTTGGAAGAACTACAGGTGAGAATCTGATTCGTCTAAACTCATCAACAATTTTCAGGATTCGTTGGTTGATCGAATTACTGATGCCAAATTTCTCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTATATAATGTCGAGAAAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTTTCCTGGGTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTTCCATACGATTTTCAGTGATTTAGAAATTGGTTACAAGGTTTTGAGTTTGGATCTTTTTGGTGAGTTATTCTGCAAGGTCAAAGTTAAGTTCATAAGAAAATTTTAATTTCTTATAACCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGGCACAGTACAGTCAGAAAATAACAATGGACACCAAACCATAACTCTCTGTTACGGTACAAGCGAGAAAGCGACCGTTCTTCCAAGCGGCGCCGACTCCTCGTTTCATAATCGTT</canonical>
            <polymorphic>GCGAACATTACTTGTTAAATGCCGAGAGTAACATTAAGATGAGAGAAAAACTCAATCTTTCGAACGATTATCATTTGGAAGAACTACAGGTGAGAATCTGATTCGTCTAAACTCATCAACAATTTTCAGGATTCGTTGGTTGATCGAATTACTGATGCCAAATTTCTCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTATATAATGTCGAGAAAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATWCCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTTTCCTGGGTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTTCCATACGATTTTCAGTGATTTAGAAATTGGTTACAAGGTTTTGAGTTTGGATCTTTTTGGTGAGTTATTCTGCAAGGTCAAAGTTAAGTTCATAAGAAAATTTTAATTTCTTATAACCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGGCACAGTACAGTCAGAAAATAACAATGGACACCAAACCATAACTCTCTGTTACGGTACAAGCGAGAAAGCGACCGTTCTTCCAAGCGGCGCCGACTCCTCGTTTCATAATCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACACCTGCTCAGTAGATGATAA</pcr_primer_p1>
		<pcr_primer_p2>GATAAATGTGAAGAAAAATTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATC</canonical_amplicon>
		<polymorphic_amplicon>AACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATWCCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19661</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>60724</contig_pos>
        <strand>+</strand>
        <context>CTGTAAAAAT[A/G]TCCACTAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAAT</left_flank>
        <right_flank>TCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTAACATTAAGATGAGAGAAAAACTCAATCTTTCGAACGATTATCATTTGGAAGAACTACAGGTGAGAATCTGATTCGTCTAAACTCATCAACAATTTTCAGGATTCGTTGGTTGATCGAATTACTGATGCCAAATTTCTCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTATATAATGTCGAGAAAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTTTCCTGGGTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTTCCATACGATTTTCAGTGATTTAGAAATTGGTTACAAGGTTTTGAGTTTGGATCTTTTTGGTGAGTTATTCTGCAAGGTCAAAGTTAAGTTCATAAGAAAATTTTAATTTCTTATAACCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGGCACAGTACAGTCAGAAAATAACAATGGACACCAAACCATAACTCTCTGTTACGGTACAAGCGAGAAAGCGACCGTTCTTCCAAGCGGCGCCGACTCCTCGTTTCATAATCGTTTTAGTGGCAGTAGACGACAAGCCCGC</canonical>
            <polymorphic>AGTAACATTAAGATGAGAGAAAAACTCAATCTTTCGAACGATTATCATTTGGAAGAACTACAGGTGAGAATCTGATTCGTCTAAACTCATCAACAATTTTCAGGATTCGTTGGTTGATCGAATTACTGATGCCAAATTTCTCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTATATAATGTCGAGAAAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAATRTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTTTCCTGGGTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTTCCATACGATTTTCAGTGATTTAGAAATTGGTTACAAGGTTTTGAGTTTGGATCTTTTTGGTGAGTTATTCTGCAAGGTCAAAGTTAAGTTCATAAGAAAATTTTAATTTCTTATAACCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGGCACAGTACAGTCAGAAAATAACAATGGACACCAAACCATAACTCTCTGTTACGGTACAAGCGAGAAAGCGACCGTTCTTCCAAGCGGCGCCGACTCCTCGTTTCATAATCGTTTTAGTGGCAGTAGACGACAAGCCCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 484 14</canonical_bands>
                <polymorphic_bands>986 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACACCTGCTCAGTAGATGATAA</pcr_primer_p1>
		<pcr_primer_p2>GATAAATGTGAAGAAAAATTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATC</canonical_amplicon>
		<polymorphic_amplicon>AACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAATRTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19662</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>60750</contig_pos>
        <strand>+</strand>
        <context>TCACATTATC[A/T]ACCATTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATC</left_flank>
        <right_flank>ACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATCTTTCGAACGATTATCATTTGGAAGAACTACAGGTGAGAATCTGATTCGTCTAAACTCATCAACAATTTTCAGGATTCGTTGGTTGATCGAATTACTGATGCCAAATTTCTCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTATATAATGTCGAGAAAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTTTCCTGGGTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTTCCATACGATTTTCAGTGATTTAGAAATTGGTTACAAGGTTTTGAGTTTGGATCTTTTTGGTGAGTTATTCTGCAAGGTCAAAGTTAAGTTCATAAGAAAATTTTAATTTCTTATAACCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGGCACAGTACAGTCAGAAAATAACAATGGACACCAAACCATAACTCTCTGTTACGGTACAAGCGAGAAAGCGACCGTTCTTCCAAGCGGCGCCGACTCCTCGTTTCATAATCGTTTTAGTGGCAGTAGACGACAAGCCCGCCTGTGGTGCACAGGTCCTGGGCGCGC</canonical>
            <polymorphic>CAATCTTTCGAACGATTATCATTTGGAAGAACTACAGGTGAGAATCTGATTCGTCTAAACTCATCAACAATTTTCAGGATTCGTTGGTTGATCGAATTACTGATGCCAAATTTCTCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTATATAATGTCGAGAAAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCWACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTTTCCTGGGTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTTCCATACGATTTTCAGTGATTTAGAAATTGGTTACAAGGTTTTGAGTTTGGATCTTTTTGGTGAGTTATTCTGCAAGGTCAAAGTTAAGTTCATAAGAAAATTTTAATTTCTTATAACCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGGCACAGTACAGTCAGAAAATAACAATGGACACCAAACCATAACTCTCTGTTACGGTACAAGCGAGAAAGCGACCGTTCTTCCAAGCGGCGCCGACTCCTCGTTTCATAATCGTTTTAGTGGCAGTAGACGACAAGCCCGCCTGTGGTGCACAGGTCCTGGGCGCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACACCTGCTCAGTAGATGATAA</pcr_primer_p1>
		<pcr_primer_p2>GATAAATGTGAAGAAAAATTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATC</canonical_amplicon>
		<polymorphic_amplicon>AACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCWACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19663</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>60799</contig_pos>
        <strand>+</strand>
        <context>GATTTAAATA[A/G]YTTTTATCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATA</left_flank>
        <right_flank>CTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGTCTAAACTCATCAACAATTTTCAGGATTCGTTGGTTGATCGAATTACTGATGCCAAATTTCTCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTATATAATGTCGAGAAAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTTTCCTGGGTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTTCCATACGATTTTCAGTGATTTAGAAATTGGTTACAAGGTTTTGAGTTTGGATCTTTTTGGTGAGTTATTCTGCAAGGTCAAAGTTAAGTTCATAAGAAAATTTTAATTTCTTATAACCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGGCACAGTACAGTCAGAAAATAACAATGGACACCAAACCATAACTCTCTGTTACGGTACAAGCGAGAAAGCGACCGTTCTTCCAAGCGGCGCCGACTCCTCGTTTCATAATCGTTTTAGTGGCAGTAGACGACAAGCCCGCCTGTGGTGCACAGGTCCTGGGCGCGCATACGCATAATGGATGGGCGACGGAGGACGCGCCGATGAATTGGGTACA</canonical>
            <polymorphic>TTCGTCTAAACTCATCAACAATTTTCAGGATTCGTTGGTTGATCGAATTACTGATGCCAAATTTCTCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTATATAATGTCGAGAAAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATARCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTTTCCTGGGTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTTCCATACGATTTTCAGTGATTTAGAAATTGGTTACAAGGTTTTGAGTTTGGATCTTTTTGGTGAGTTATTCTGCAAGGTCAAAGTTAAGTTCATAAGAAAATTTTAATTTCTTATAACCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGGCACAGTACAGTCAGAAAATAACAATGGACACCAAACCATAACTCTCTGTTACGGTACAAGCGAGAAAGCGACCGTTCTTCCAAGCGGCGCCGACTCCTCGTTTCATAATCGTTTTAGTGGCAGTAGACGACAAGCCCGCCTGTGGTGCACAGGTCCTGGGCGCGCATACGCATAATGGATGGGCGACGGAGGACGCGCCGATGAATTGGGTACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>500 284 216</canonical_bands>
                <polymorphic_bands>784 216</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>284 243 216 177 80</canonical_bands>
                <polymorphic_bands>527 216 177 80</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACTAATTCCCATTCACATTATC</pcr_primer_p1>
		<pcr_primer_p2>CAAAAAGATCCAAACTCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTTTCCTGGGTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTTCCATACGATTTTCAGTGATTTAGAAATTGGTTACAAGGTTTTGAGTTTGGATCTTTTTG</canonical_amplicon>
		<polymorphic_amplicon>CACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATARCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTTTCCTGGGTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTTCCATACGATTTTCAGTGATTTAGAAATTGGTTACAAGGTTTTGAGTTTGGATCTTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19664</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>60800</contig_pos>
        <strand>+</strand>
        <context>ATTTAAATAR[C/T]TTTTATCATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAG</left_flank>
        <right_flank>TTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTAT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGTCTAAACTCATCAACAATTTTCAGGATTCGTTGGTTGATCGAATTACTGATGCCAAATTTCTCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTATATAATGTCGAGAAAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTTTCCTGGGTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTTCCATACGATTTTCAGTGATTTAGAAATTGGTTACAAGGTTTTGAGTTTGGATCTTTTTGGTGAGTTATTCTGCAAGGTCAAAGTTAAGTTCATAAGAAAATTTTAATTTCTTATAACCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGGCACAGTACAGTCAGAAAATAACAATGGACACCAAACCATAACTCTCTGTTACGGTACAAGCGAGAAAGCGACCGTTCTTCCAAGCGGCGCCGACTCCTCGTTTCATAATCGTTTTAGTGGCAGTAGACGACAAGCCCGCCTGTGGTGCACAGGTCCTGGGCGCGCATACGCATAATGGATGGGCGACGGAGGACGCGCCGATGAATTGGGTACAG</canonical>
            <polymorphic>TCGTCTAAACTCATCAACAATTTTCAGGATTCGTTGGTTGATCGAATTACTGATGCCAAATTTCTCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTATATAATGTCGAGAAAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGYTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTTTCCTGGGTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTTCCATACGATTTTCAGTGATTTAGAAATTGGTTACAAGGTTTTGAGTTTGGATCTTTTTGGTGAGTTATTCTGCAAGGTCAAAGTTAAGTTCATAAGAAAATTTTAATTTCTTATAACCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGGCACAGTACAGTCAGAAAATAACAATGGACACCAAACCATAACTCTCTGTTACGGTACAAGCGAGAAAGCGACCGTTCTTCCAAGCGGCGCCGACTCCTCGTTTCATAATCGTTTTAGTGGCAGTAGACGACAAGCCCGCCTGTGGTGCACAGGTCCTGGGCGCGCATACGCATAATGGATGGGCGACGGAGGACGCGCCGATGAATTGGGTACAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>501 284 215</canonical_bands>
                <polymorphic_bands>785 215</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>284 243 215 177 81</canonical_bands>
                <polymorphic_bands>527 215 177 81</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACTAATTCCCATTCACATTATC</pcr_primer_p1>
		<pcr_primer_p2>CAAAAAGATCCAAACTCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTTTCCTGGGTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTTCCATACGATTTTCAGTGATTTAGAAATTGGTTACAAGGTTTTGAGTTTGGATCTTTTTG</canonical_amplicon>
		<polymorphic_amplicon>CACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGYTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTTTCCTGGGTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTTCCATACGATTTTCAGTGATTTAGAAATTGGTTACAAGGTTTTGAGTTTGGATCTTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19665</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>64629</contig_pos>
        <strand>+</strand>
        <context>TTRGTTTGAT[C/T]AAGAGATTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCGAGGATGACATTAGCAAAATGAATCAAGAATTGCGTATTAGTTTGAT</left_flank>
        <right_flank>AAGAGATTCATGGAAGAGCCACCACTTCTTCATAACAAAGTAGCATCAGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAGATCCTTAAAACCCACTCTCCATTCTTCTTCAAACAATTTCCCGTACAAGCAGAAGAAGGCAGTATTCCTTCATTAAAATTGCACGACGTCACTTCTGACGTATTCCAAGACTTTCTGGAGCTCATCTACAACGAATCTGGTGTTATTCAGGGTTTGTTAACATTTTCATATGTTCTAAATGATTTCTATGACTTTCAGAACACAATGTGGAAGCTCTTCTTGTTTTAGCCGCGAGCCTAGAAGCATCAGTTGTCTTCAAACCCTGTGAGGATTTTCTTATCACTTCGGAGATGGATTTGCCTGAAAAATTCAGATTGGCAAATCGATTCAACTTGCTGGAGCTAGGGGTGAGAAATATTTTAGGGGTTTTTTAAAGTTTCAATAATAATTTTTCAGTACTTGGTCATAGAACGTGTCGACAGCTTGCCATTGCTCAAGGATCTTCTCGAGGATGACATTAGCAAAATGAATCAAGAATTGCGTATTAGTTTGATTAAGAGATTCATGGAAGAGCCACCACTTCTTCATAACAAAGTAGCATCAGCGGTTGTAGTTGTGGAGTAACGGGATTTTTTTAATTGGTTTAAATAATTTAATAATGTGTTTTTCATTAATTGTGTCTTTTTCTCTGTACAGGGTGGCTGAAAAGTATTGAGACACTTGTTATGATGGCTCTTGGCACCGTGCCAATCGTATTTTCGAAAATAGGGAGCGTATATAAGCCGACATTAGAGCCATTTCCCATCACTTTATCTCTTCACAAAGTTATGCGAGCTTCTCCTCATCGCCAAACCATTGCCAAGCTGTTCAACGACGGCATCTCCACCGGTGACATCGCTCGAAGACTTCTTCTTCCGAGAGCAACTGTCTATCGAGTTGTGCAACAATTGAAAGATCGAGGACATGTGTTGGAGCTTAAGAAAAGCGGAAGACCTCGTAGTGTCAACACTCGCCGGACTCGTGGCATCATCAAGAAGAGAATCACACGAAATGAT</canonical>
            <polymorphic>TTCAGATCCTTAAAACCCACTCTCCATTCTTCTTCAAACAATTTCCCGTACAAGCAGAAGAAGGCAGTATTCCTTCATTAAAATTGCACGACGTCACTTCTGACGTATTCCAAGACTTTCTGGAGCTCATCTACAACGAATCTGGTGTTATTCAGGGTTTGTTAACATTTTCATATGTTCTAAATGATTTCTATGACTTTCAGAACACAATGTGGAAGCTCTTCTTGTTTTAGCCGCGAGCCTAGAAGCATCAGTTGTCTTCAAACCCTGTGAGGATTTTCTTATCACTTCGGAGATGGATTTGCCTGAAAAATTCAGATTGGCAAATCGATTCAACTTGCTGGAGCTAGGGGTGAGAAATATTTTAGGGGTTTTTTAAAGTTTCAATAATAATTTTTCAGTACTTGGTCATAGAACGTGTCGACAGCTTGCCATTGCTCAAGGATCTTCTCGAGGATGACATTAGCAAAATGAATCAAGAATTGCGTATTAGTTTGATYAAGAGATTCATGGAAGAGCCACCACTTCTTCATAACAAAGTAGCATCAGCGGTTGTAGTTGTGGAGTAACGGGATTTTTTTAATTGGTTTAAATAATTTAATAATGTGTTTTTCATTAATTGTGTCTTTTTCTCTGTACAGGGTGGCTGAAAAGTATTGAGACACTTGTTATGATGGCTCTTGGCACCGTGCCAATCGTATTTTCGAAAATAGGGAGCGTATATAAGCCGACATTAGAGCCATTTCCCATCACTTTATCTCTTCACAAAGTTATGCGAGCTTCTCCTCATCGCCAAACCATTGCCAAGCTGTTCAACGACGGCATCTCCACCGGTGACATCGCTCGAAGACTTCTTCTTCCGAGAGCAACTGTCTATCGAGTTGTGCAACAATTGAAAGATCGAGGACATGTGTTGGAGCTTAAGAAAAGCGGAAGACCTCGTAGTGTCAACACTCGCCGGACTCGTGGCATCATCAAGAAGAGAATCACACGAAATGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>305 214 123 84 81 79 68 18 10 9 9</canonical_bands>
                <polymorphic_bands>305 214 204 84 79 68 18 10 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTTTCAGTACTTGGTCATAGAA</pcr_primer_p1>
		<pcr_primer_p2>CAGAGAAAAAGACACAATTAATGA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATTTTTCAGTACTTGGTCATAGAACGTGTCGACAGCTTGCCATTGCTCAAGGATCTTCTCGAGGATGACATTAGCAAAATGAATCAAGAATTGCGTATTAGTTTGATTAAGAGATTCATGGAAGAGCCACCACTTCTTCATAACAAAGTAGCATCAGCGGTTGTAGTTGTGGAGTAACGGGATTTTTTTAATTGGTTTAAATAATTTAATAATGTGTTTTTCATTAATTGTGTCTTTTTCTCTG</canonical_amplicon>
		<polymorphic_amplicon>AATTTTTCAGTACTTGGTCATAGAACGTGTCGACAGCTTGCCATTGCTCAAGGATCTTCTCGAGGATGACATTAGCAAAATGAATCAAGAATTGCGTATTAGTTTGATYAAGAGATTCATGGAAGAGCCACCACTTCTTCATAACAAAGTAGCATCAGCGGTTGTAGTTGTGGAGTAACGGGATTTTTTTAATTGGTTTAAATAATTTAATAATGTGTTTTTCATTAATTGTGTCTTTTTCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19666</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>64621</contig_pos>
        <strand>+</strand>
        <context>ATTGCGTATT[A/G]GTTTGATYAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGATCTTCTCGAGGATGACATTAGCAAAATGAATCAAGAATTGCGTATT</left_flank>
        <right_flank>GTTTGATTAAGAGATTCATGGAAGAGCCACCACTTCTTCATAACAAAGTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAAATATTTCAGATCCTTAAAACCCACTCTCCATTCTTCTTCAAACAATTTCCCGTACAAGCAGAAGAAGGCAGTATTCCTTCATTAAAATTGCACGACGTCACTTCTGACGTATTCCAAGACTTTCTGGAGCTCATCTACAACGAATCTGGTGTTATTCAGGGTTTGTTAACATTTTCATATGTTCTAAATGATTTCTATGACTTTCAGAACACAATGTGGAAGCTCTTCTTGTTTTAGCCGCGAGCCTAGAAGCATCAGTTGTCTTCAAACCCTGTGAGGATTTTCTTATCACTTCGGAGATGGATTTGCCTGAAAAATTCAGATTGGCAAATCGATTCAACTTGCTGGAGCTAGGGGTGAGAAATATTTTAGGGGTTTTTTAAAGTTTCAATAATAATTTTTCAGTACTTGGTCATAGAACGTGTCGACAGCTTGCCATTGCTCAAGGATCTTCTCGAGGATGACATTAGCAAAATGAATCAAGAATTGCGTATTAGTTTGATTAAGAGATTCATGGAAGAGCCACCACTTCTTCATAACAAAGTAGCATCAGCGGTTGTAGTTGTGGAGTAACGGGATTTTTTTAATTGGTTTAAATAATTTAATAATGTGTTTTTCATTAATTGTGTCTTTTTCTCTGTACAGGGTGGCTGAAAAGTATTGAGACACTTGTTATGATGGCTCTTGGCACCGTGCCAATCGTATTTTCGAAAATAGGGAGCGTATATAAGCCGACATTAGAGCCATTTCCCATCACTTTATCTCTTCACAAAGTTATGCGAGCTTCTCCTCATCGCCAAACCATTGCCAAGCTGTTCAACGACGGCATCTCCACCGGTGACATCGCTCGAAGACTTCTTCTTCCGAGAGCAACTGTCTATCGAGTTGTGCAACAATTGAAAGATCGAGGACATGTGTTGGAGCTTAAGAAAAGCGGAAGACCTCGTAGTGTCAACACTCGCCGGACTCGTGGCATCATCAAGAAGAGAATCACAC</canonical>
            <polymorphic>CGAAATATTTCAGATCCTTAAAACCCACTCTCCATTCTTCTTCAAACAATTTCCCGTACAAGCAGAAGAAGGCAGTATTCCTTCATTAAAATTGCACGACGTCACTTCTGACGTATTCCAAGACTTTCTGGAGCTCATCTACAACGAATCTGGTGTTATTCAGGGTTTGTTAACATTTTCATATGTTCTAAATGATTTCTATGACTTTCAGAACACAATGTGGAAGCTCTTCTTGTTTTAGCCGCGAGCCTAGAAGCATCAGTTGTCTTCAAACCCTGTGAGGATTTTCTTATCACTTCGGAGATGGATTTGCCTGAAAAATTCAGATTGGCAAATCGATTCAACTTGCTGGAGCTAGGGGTGAGAAATATTTTAGGGGTTTTTTAAAGTTTCAATAATAATTTTTCAGTACTTGGTCATAGAACGTGTCGACAGCTTGCCATTGCTCAAGGATCTTCTCGAGGATGACATTAGCAAAATGAATCAAGAATTGCGTATTRGTTTGATTAAGAGATTCATGGAAGAGCCACCACTTCTTCATAACAAAGTAGCATCAGCGGTTGTAGTTGTGGAGTAACGGGATTTTTTTAATTGGTTTAAATAATTTAATAATGTGTTTTTCATTAATTGTGTCTTTTTCTCTGTACAGGGTGGCTGAAAAGTATTGAGACACTTGTTATGATGGCTCTTGGCACCGTGCCAATCGTATTTTCGAAAATAGGGAGCGTATATAAGCCGACATTAGAGCCATTTCCCATCACTTTATCTCTTCACAAAGTTATGCGAGCTTCTCCTCATCGCCAAACCATTGCCAAGCTGTTCAACGACGGCATCTCCACCGGTGACATCGCTCGAAGACTTCTTCTTCCGAGAGCAACTGTCTATCGAGTTGTGCAACAATTGAAAGATCGAGGACATGTGTTGGAGCTTAAGAAAAGCGGAAGACCTCGTAGTGTCAACACTCGCCGGACTCGTGGCATCATCAAGAAGAGAATCACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGCCTGAAAAATTCAGAT</pcr_primer_p1>
		<pcr_primer_p2>GCTGATGCTACTTTGTTATGAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTTGCCTGAAAAATTCAGATTGGCAAATCGATTCAACTTGCTGGAGCTAGGGGTGAGAAATATTTTAGGGGTTTTTTAAAGTTTCAATAATAATTTTTCAGTACTTGGTCATAGAACGTGTCGACAGCTTGCCATTGCTCAAGGATCTTCTCGAGGATGACATTAGCAAAATGAATCAAGAATTGCGTATTAGTTTGATTAAGAGATTCATGGAAGAGCCACCACTTCTTCATAACAAAGTAGCATCAGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTGCCTGAAAAATTCAGATTGGCAAATCGATTCAACTTGCTGGAGCTAGGGGTGAGAAATATTTTAGGGGTTTTTTAAAGTTTCAATAATAATTTTTCAGTACTTGGTCATAGAACGTGTCGACAGCTTGCCATTGCTCAAGGATCTTCTCGAGGATGACATTAGCAAAATGAATCAAGAATTGCGTATTRGTTTGATTAAGAGATTCATGGAAGAGCCACCACTTCTTCATAACAAAGTAGCATCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19667</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>64499</contig_pos>
        <strand>+</strand>
        <context>ATATTTTAGG[G/T]GTTTTTTAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGGCAAATCGATTCAACTTGCTGGAGCTAGGGGTGAGAAATATTTTAGG</left_flank>
        <right_flank>GTTTTTTAAAGTTTCAATAATAATTTTTCAGTACTTGGTCATAGAACGTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGTTAGCTTTTTCCAACAAAATCTACTCTATTTTGTAAAAGTCCAAACTTGGCTATTTTCAGCTGAAAATAGGTAAATTTACATTTTTGGTTAACTATTAGTTTAGCCGGTACTGTAGGTCGAAATATTTCAGATCCTTAAAACCCACTCTCCATTCTTCTTCAAACAATTTCCCGTACAAGCAGAAGAAGGCAGTATTCCTTCATTAAAATTGCACGACGTCACTTCTGACGTATTCCAAGACTTTCTGGAGCTCATCTACAACGAATCTGGTGTTATTCAGGGTTTGTTAACATTTTCATATGTTCTAAATGATTTCTATGACTTTCAGAACACAATGTGGAAGCTCTTCTTGTTTTAGCCGCGAGCCTAGAAGCATCAGTTGTCTTCAAACCCTGTGAGGATTTTCTTATCACTTCGGAGATGGATTTGCCTGAAAAATTCAGATTGGCAAATCGATTCAACTTGCTGGAGCTAGGGGTGAGAAATATTTTAGGGGTTTTTTAAAGTTTCAATAATAATTTTTCAGTACTTGGTCATAGAACGTGTCGACAGCTTGCCATTGCTCAAGGATCTTCTCGAGGATGACATTAGCAAAATGAATCAAGAATTGCGTATTAGTTTGATTAAGAGATTCATGGAAGAGCCACCACTTCTTCATAACAAAGTAGCATCAGCGGTTGTAGTTGTGGAGTAACGGGATTTTTTTAATTGGTTTAAATAATTTAATAATGTGTTTTTCATTAATTGTGTCTTTTTCTCTGTACAGGGTGGCTGAAAAGTATTGAGACACTTGTTATGATGGCTCTTGGCACCGTGCCAATCGTATTTTCGAAAATAGGGAGCGTATATAAGCCGACATTAGAGCCATTTCCCATCACTTTATCTCTTCACAAAGTTATGCGAGCTTCTCCTCATCGCCAAACCATTGCCAAGCTGTTCAACGACGGCATCTCCACCGGTGACATCGCTCGAAGACTTCTTCTTCCGAGAGCAAC</canonical>
            <polymorphic>GTTGTTAGCTTTTTCCAACAAAATCTACTCTATTTTGTAAAAGTCCAAACTTGGCTATTTTCAGCTGAAAATAGGTAAATTTACATTTTTGGTTAACTATTAGTTTAGCCGGTACTGTAGGTCGAAATATTTCAGATCCTTAAAACCCACTCTCCATTCTTCTTCAAACAATTTCCCGTACAAGCAGAAGAAGGCAGTATTCCTTCATTAAAATTGCACGACGTCACTTCTGACGTATTCCAAGACTTTCTGGAGCTCATCTACAACGAATCTGGTGTTATTCAGGGTTTGTTAACATTTTCATATGTTCTAAATGATTTCTATGACTTTCAGAACACAATGTGGAAGCTCTTCTTGTTTTAGCCGCGAGCCTAGAAGCATCAGTTGTCTTCAAACCCTGTGAGGATTTTCTTATCACTTCGGAGATGGATTTGCCTGAAAAATTCAGATTGGCAAATCGATTCAACTTGCTGGAGCTAGGGGTGAGAAATATTTTAGGKGTTTTTTAAAGTTTCAATAATAATTTTTCAGTACTTGGTCATAGAACGTGTCGACAGCTTGCCATTGCTCAAGGATCTTCTCGAGGATGACATTAGCAAAATGAATCAAGAATTGCGTATTAGTTTGATTAAGAGATTCATGGAAGAGCCACCACTTCTTCATAACAAAGTAGCATCAGCGGTTGTAGTTGTGGAGTAACGGGATTTTTTTAATTGGTTTAAATAATTTAATAATGTGTTTTTCATTAATTGTGTCTTTTTCTCTGTACAGGGTGGCTGAAAAGTATTGAGACACTTGTTATGATGGCTCTTGGCACCGTGCCAATCGTATTTTCGAAAATAGGGAGCGTATATAAGCCGACATTAGAGCCATTTCCCATCACTTTATCTCTTCACAAAGTTATGCGAGCTTCTCCTCATCGCCAAACCATTGCCAAGCTGTTCAACGACGGCATCTCCACCGGTGACATCGCTCGAAGACTTCTTCTTCCGAGAGCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGCCTGAAAAATTCAGAT</pcr_primer_p1>
		<pcr_primer_p2>GCTGATGCTACTTTGTTATGAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTTGCCTGAAAAATTCAGATTGGCAAATCGATTCAACTTGCTGGAGCTAGGGGTGAGAAATATTTTAGGGGTTTTTTAAAGTTTCAATAATAATTTTTCAGTACTTGGTCATAGAACGTGTCGACAGCTTGCCATTGCTCAAGGATCTTCTCGAGGATGACATTAGCAAAATGAATCAAGAATTGCGTATTAGTTTGATTAAGAGATTCATGGAAGAGCCACCACTTCTTCATAACAAAGTAGCATCAGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTGCCTGAAAAATTCAGATTGGCAAATCGATTCAACTTGCTGGAGCTAGGGGTGAGAAATATTTTAGGKGTTTTTTAAAGTTTCAATAATAATTTTTCAGTACTTGGTCATAGAACGTGTCGACAGCTTGCCATTGCTCAAGGATCTTCTCGAGGATGACATTAGCAAAATGAATCAAGAATTGCGTATTAGTTTGATTAAGAGATTCATGGAAGAGCCACCACTTCTTCATAACAAAGTAGCATCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19668</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>64366</contig_pos>
        <strand>+</strand>
        <context>GTTTTAGCCG[C/T]GAGCCTAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTCTATGACTTTCAGAACACAATGTGGAAGCTCTTCTTGTTTTAGCCG</left_flank>
        <right_flank>GAGCCTAGAAGCATCAGTTGTCTTCAAACCCTGTGAGGATTTTCTTATCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAGTCAAAAGTGTCACGATTTGGAATTAGTACTTGGTTGGTTTAAAGCGTTATATCTCATCTGGGTGATTTTGTACCAAAAAGTTTACGACTACAAAATTGAAGCTCTATTTTTGTTTAGTAAATCTGCAAGTTGTTAGCTTTTTCCAACAAAATCTACTCTATTTTGTAAAAGTCCAAACTTGGCTATTTTCAGCTGAAAATAGGTAAATTTACATTTTTGGTTAACTATTAGTTTAGCCGGTACTGTAGGTCGAAATATTTCAGATCCTTAAAACCCACTCTCCATTCTTCTTCAAACAATTTCCCGTACAAGCAGAAGAAGGCAGTATTCCTTCATTAAAATTGCACGACGTCACTTCTGACGTATTCCAAGACTTTCTGGAGCTCATCTACAACGAATCTGGTGTTATTCAGGGTTTGTTAACATTTTCATATGTTCTAAATGATTTCTATGACTTTCAGAACACAATGTGGAAGCTCTTCTTGTTTTAGCCGCGAGCCTAGAAGCATCAGTTGTCTTCAAACCCTGTGAGGATTTTCTTATCACTTCGGAGATGGATTTGCCTGAAAAATTCAGATTGGCAAATCGATTCAACTTGCTGGAGCTAGGGGTGAGAAATATTTTAGGGGTTTTTTAAAGTTTCAATAATAATTTTTCAGTACTTGGTCATAGAACGTGTCGACAGCTTGCCATTGCTCAAGGATCTTCTCGAGGATGACATTAGCAAAATGAATCAAGAATTGCGTATTAGTTTGATTAAGAGATTCATGGAAGAGCCACCACTTCTTCATAACAAAGTAGCATCAGCGGTTGTAGTTGTGGAGTAACGGGATTTTTTTAATTGGTTTAAATAATTTAATAATGTGTTTTTCATTAATTGTGTCTTTTTCTCTGTACAGGGTGGCTGAAAAGTATTGAGACACTTGTTATGATGGCTCTTGGCACCGTGCCAATCGTATTTTCGAAAATAGGGAGCGTATATAAGCCGACATTAG</canonical>
            <polymorphic>ATGAGTCAAAAGTGTCACGATTTGGAATTAGTACTTGGTTGGTTTAAAGCGTTATATCTCATCTGGGTGATTTTGTACCAAAAAGTTTACGACTACAAAATTGAAGCTCTATTTTTGTTTAGTAAATCTGCAAGTTGTTAGCTTTTTCCAACAAAATCTACTCTATTTTGTAAAAGTCCAAACTTGGCTATTTTCAGCTGAAAATAGGTAAATTTACATTTTTGGTTAACTATTAGTTTAGCCGGTACTGTAGGTCGAAATATTTCAGATCCTTAAAACCCACTCTCCATTCTTCTTCAAACAATTTCCCGTACAAGCAGAAGAAGGCAGTATTCCTTCATTAAAATTGCACGACGTCACTTCTGACGTATTCCAAGACTTTCTGGAGCTCATCTACAACGAATCTGGTGTTATTCAGGGTTTGTTAACATTTTCATATGTTCTAAATGATTTCTATGACTTTCAGAACACAATGTGGAAGCTCTTCTTGTTTTAGCCGYGAGCCTAGAAGCATCAGTTGTCTTCAAACCCTGTGAGGATTTTCTTATCACTTCGGAGATGGATTTGCCTGAAAAATTCAGATTGGCAAATCGATTCAACTTGCTGGAGCTAGGGGTGAGAAATATTTTAGGGGTTTTTTAAAGTTTCAATAATAATTTTTCAGTACTTGGTCATAGAACGTGTCGACAGCTTGCCATTGCTCAAGGATCTTCTCGAGGATGACATTAGCAAAATGAATCAAGAATTGCGTATTAGTTTGATTAAGAGATTCATGGAAGAGCCACCACTTCTTCATAACAAAGTAGCATCAGCGGTTGTAGTTGTGGAGTAACGGGATTTTTTTAATTGGTTTAAATAATTTAATAATGTGTTTTTCATTAATTGTGTCTTTTTCTCTGTACAGGGTGGCTGAAAAGTATTGAGACACTTGTTATGATGGCTCTTGGCACCGTGCCAATCGTATTTTCGAAAATAGGGAGCGTATATAAGCCGACATTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 308 191</canonical_bands>
                <polymorphic_bands>692 308</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACAAGCAGAAGAAGGCAGTAT</pcr_primer_p1>
		<pcr_primer_p2>ATCTCCGAAGTGATAAGAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TACAAGCAGAAGAAGGCAGTATTCCTTCATTAAAATTGCACGACGTCACTTCTGACGTATTCCAAGACTTTCTGGAGCTCATCTACAACGAATCTGGTGTTATTCAGGGTTTGTTAACATTTTCATATGTTCTAAATGATTTCTATGACTTTCAGAACACAATGTGGAAGCTCTTCTTGTTTTAGCCGCGAGCCTAGAAGCATCAGTTGTCTTCAAACCCTGTGAGGATTTTCTTATCACTTCGGAGAT</canonical_amplicon>
		<polymorphic_amplicon>TACAAGCAGAAGAAGGCAGTATTCCTTCATTAAAATTGCACGACGTCACTTCTGACGTATTCCAAGACTTTCTGGAGCTCATCTACAACGAATCTGGTGTTATTCAGGGTTTGTTAACATTTTCATATGTTCTAAATGATTTCTATGACTTTCAGAACACAATGTGGAAGCTCTTCTTGTTTTAGCCGYGAGCCTAGAAGCATCAGTTGTCTTCAAACCCTGTGAGGATTTTCTTATCACTTCGGAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19669</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>64140</contig_pos>
        <strand>+</strand>
        <context>TTCAGATCCT[G/T]AAAACCCACT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGTTAACTATTAGTTTAGCCGGTACTGTAGGTCGAAATATTTCAGATCCT</left_flank>
        <right_flank>AAAACCCACTCTCCATTCTTCTTCAAACAATTTCCCGTACAAGCAGAAGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGACAATTTTAGGATATCTCTCACAGGAACCGAGATAATTAAGCTCAAAGTGAATGGTTTGTGTGGGCTTCTATTGAAGAGTACGATAGATTTATTAGTTTTTGGTTGTAAAAAAGTATTGTAATGTTTTTTTGGAGAATAGCCAGATAACGTTCAGGACCACTAAAAAAATAGAGTTTTACTTTTGTAGTTGGCAATTTTTTGTATAAGTTCCCCCAACTGACTATGAGTCAAAAGTGTCACGATTTGGAATTAGTACTTGGTTGGTTTAAAGCGTTATATCTCATCTGGGTGATTTTGTACCAAAAAGTTTACGACTACAAAATTGAAGCTCTATTTTTGTTTAGTAAATCTGCAAGTTGTTAGCTTTTTCCAACAAAATCTACTCTATTTTGTAAAAGTCCAAACTTGGCTATTTTCAGCTGAAAATAGGTAAATTTACATTTTTGGTTAACTATTAGTTTAGCCGGTACTGTAGGTCGAAATATTTCAGATCCTTAAAACCCACTCTCCATTCTTCTTCAAACAATTTCCCGTACAAGCAGAAGAAGGCAGTATTCCTTCATTAAAATTGCACGACGTCACTTCTGACGTATTCCAAGACTTTCTGGAGCTCATCTACAACGAATCTGGTGTTATTCAGGGTTTGTTAACATTTTCATATGTTCTAAATGATTTCTATGACTTTCAGAACACAATGTGGAAGCTCTTCTTGTTTTAGCCGCGAGCCTAGAAGCATCAGTTGTCTTCAAACCCTGTGAGGATTTTCTTATCACTTCGGAGATGGATTTGCCTGAAAAATTCAGATTGGCAAATCGATTCAACTTGCTGGAGCTAGGGGTGAGAAATATTTTAGGGGTTTTTTAAAGTTTCAATAATAATTTTTCAGTACTTGGTCATAGAACGTGTCGACAGCTTGCCATTGCTCAAGGATCTTCTCGAGGATGACATTAGCAAAATGAATCAAGAATTGCGTATTAGTTTGATTAAGAGATTCAT</canonical>
            <polymorphic>TGGACAATTTTAGGATATCTCTCACAGGAACCGAGATAATTAAGCTCAAAGTGAATGGTTTGTGTGGGCTTCTATTGAAGAGTACGATAGATTTATTAGTTTTTGGTTGTAAAAAAGTATTGTAATGTTTTTTTGGAGAATAGCCAGATAACGTTCAGGACCACTAAAAAAATAGAGTTTTACTTTTGTAGTTGGCAATTTTTTGTATAAGTTCCCCCAACTGACTATGAGTCAAAAGTGTCACGATTTGGAATTAGTACTTGGTTGGTTTAAAGCGTTATATCTCATCTGGGTGATTTTGTACCAAAAAGTTTACGACTACAAAATTGAAGCTCTATTTTTGTTTAGTAAATCTGCAAGTTGTTAGCTTTTTCCAACAAAATCTACTCTATTTTGTAAAAGTCCAAACTTGGCTATTTTCAGCTGAAAATAGGTAAATTTACATTTTTGGTTAACTATTAGTTTAGCCGGTACTGTAGGTCGAAATATTTCAGATCCTKAAAACCCACTCTCCATTCTTCTTCAAACAATTTCCCGTACAAGCAGAAGAAGGCAGTATTCCTTCATTAAAATTGCACGACGTCACTTCTGACGTATTCCAAGACTTTCTGGAGCTCATCTACAACGAATCTGGTGTTATTCAGGGTTTGTTAACATTTTCATATGTTCTAAATGATTTCTATGACTTTCAGAACACAATGTGGAAGCTCTTCTTGTTTTAGCCGCGAGCCTAGAAGCATCAGTTGTCTTCAAACCCTGTGAGGATTTTCTTATCACTTCGGAGATGGATTTGCCTGAAAAATTCAGATTGGCAAATCGATTCAACTTGCTGGAGCTAGGGGTGAGAAATATTTTAGGGGTTTTTTAAAGTTTCAATAATAATTTTTCAGTACTTGGTCATAGAACGTGTCGACAGCTTGCCATTGCTCAAGGATCTTCTCGAGGATGACATTAGCAAAATGAATCAAGAATTGCGTATTAGTTTGATTAAGAGATTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>230 214 182 123 84 68 47 40 12</canonical_bands>
                <polymorphic_bands>230 214 182 123 115 84 40 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAATTAGTACTTGGTTGGTTTA</pcr_primer_p1>
		<pcr_primer_p2>TACTGCCTTCTTCTGCTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>GGAATTAGTACTTGGTTGGTTTAAAGCGTTATATCTCATCTGGGTGATTTTGTACCAAAAAGTTTACGACTACAAAATTGAAGCTCTATTTTTGTTTAGTAAATCTGCAAGTTGTTAGCTTTTTCCAACAAAATCTACTCTATTTTGTAAAAGTCCAAACTTGGCTATTTTCAGCTGAAAATAGGTAAATTTACATTTTTGGTTAACTATTAGTTTAGCCGGTACTGTAGGTCGAAATATTTCAGATCCTTAAAACCCACTCTCCATTCTTCTTCAAACAATTTCCCGTACAAGCAGAAGAAGGCAGTA</canonical_amplicon>
		<polymorphic_amplicon>GGAATTAGTACTTGGTTGGTTTAAAGCGTTATATCTCATCTGGGTGATTTTGTACCAAAAAGTTTACGACTACAAAATTGAAGCTCTATTTTTGTTTAGTAAATCTGCAAGTTGTTAGCTTTTTCCAACAAAATCTACTCTATTTTGTAAAAGTCCAAACTTGGCTATTTTCAGCTGAAAATAGGTAAATTTACATTTTTGGTTAACTATTAGTTTAGCCGGTACTGTAGGTCGAAATATTTCAGATCCTKAAAACCCACTCTCCATTCTTCTTCAAACAATTTCCCGTACAAGCAGAAGAAGGCAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19678</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>98179</contig_pos>
        <strand>+</strand>
        <context>ACTACATTCG[C/T]CCTCAACTGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAATTTCTACTAAACATTGGTAAATAGTGAACTTCCAGAACTACATTCG</left_flank>
        <right_flank>CCTCAACTGCGACACTCGGATGCGGAATCTTTTCGTTACCGTATCCGCCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCGGTTGCTCATCTCGCATTTTGGCTGGTGTAACGATTTATTTGGGAATTGGAGGAGAGTTGATGGAAAGTGCATATCGGATTAATTGCAATTTAATTCTGATGAAAATGATTCGGAATGTTCATCGATACCATCGATGGATTCCATTTTCGAGGACAGCTATTTATATAAAAAGTCTTTTGAGGGACAGTTGGAGACCAGTGGCGCCTATGGTAAATTGTCTCGCGCGTTATTTGTCAAGAGCTTCAAAATAAGAATAATCAGGTCCTACTTTTGGTTTTACTCGGGGCCGATTTAAACGGAAAATGTCAGAATGAGCGGAGCCTAATCGTGTTTATACTCATTTCGAAGCTTTTGACAAGTTGAATAAGAATATTCACTTCAAATTTTGAATTTCGTCTCATAAAATCTGTTGTATTCTATCTAAGTGAACATCCAAAATTGGCTAATTTCTACTAAACATTGGTAAATAGTGAACTTCCAGAACTACATTCGCCCTCAACTGCGACACTCGGATGCGGAATCTTTTCGTTACCGTATCCGCCAATCCGTTTCCTCTCGTCCCAGCGGAGCACACGAAGAAATTATTCAACTTCAACGTCGTGTTGAAGACATGTTTGTGGCGAGACCCATCACTTGTCAACCGACTTCGGTTACTGTACATATGGGATTGAGGAGGCCATCGTCGATGAGAAGTTGTCGAATTCCTGCGGATATTAATTTGAATGTTACGCAGGTGAGGTTTTTCAGATCTTTTTAACTAAATTCAGTTGTGGTGACCTCCTAGATTGGATTTCTAGGCCACCAGTCCTTTTTGTACTAAAATATTATCTTCAAAAAATTTCAGATCACTCGAGAACGTCCACCTCCTCTTCGAATAGCAACTGATTTTATAATAGATATGCCACTGGACACCCCCAGTCCTGTAGAAGAGGGCATTGCTCATAACAAGGATCTACCCCCCGACTACGATAGTTTGGAAGCTGCCGCTTTCAA</canonical>
            <polymorphic>TTTTTCGGTTGCTCATCTCGCATTTTGGCTGGTGTAACGATTTATTTGGGAATTGGAGGAGAGTTGATGGAAAGTGCATATCGGATTAATTGCAATTTAATTCTGATGAAAATGATTCGGAATGTTCATCGATACCATCGATGGATTCCATTTTCGAGGACAGCTATTTATATAAAAAGTCTTTTGAGGGACAGTTGGAGACCAGTGGCGCCTATGGTAAATTGTCTCGCGCGTTATTTGTCAAGAGCTTCAAAATAAGAATAATCAGGTCCTACTTTTGGTTTTACTCGGGGCCGATTTAAACGGAAAATGTCAGAATGAGCGGAGCCTAATCGTGTTTATACTCATTTCGAAGCTTTTGACAAGTTGAATAAGAATATTCACTTCAAATTTTGAATTTCGTCTCATAAAATCTGTTGTATTCTATCTAAGTGAACATCCAAAATTGGCTAATTTCTACTAAACATTGGTAAATAGTGAACTTCCAGAACTACATTCGYCCTCAACTGCGACACTCGGATGCGGAATCTTTTCGTTACCGTATCCGCCAATCCGTTTCCTCTCGTCCCAGCGGAGCACACGAAGAAATTATTCAACTTCAACGTCGTGTTGAAGACATGTTTGTGGCGAGACCCATCACTTGTCAACCGACTTCGGTTACTGTACATATGGGATTGAGGAGGCCATCGTCGATGAGAAGTTGTCGAATTCCTGCGGATATTAATTTGAATGTTACGCAGGTGAGGTTTTTCAGATCTTTTTAACTAAATTCAGTTGTGGTGACCTCCTAGATTGGATTTCTAGGCCACCAGTCCTTTTTGTACTAAAATATTATCTTCAAAAAATTTCAGATCACTCGAGAACGTCCACCTCCTCTTCGAATAGCAACTGATTTTATAATAGATATGCCACTGGACACCCCCAGTCCTGTAGAAGAGGGCATTGCTCATAACAAGGATCTACCCCCCGACTACGATAGTTTGGAAGCTGCCGCTTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTATCTAAGTGAACATCCAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCATATGTACAGTAACCGAAGTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCTATCTAAGTGAACATCCAAAATTGGCTAATTTCTACTAAACATTGGTAAATAGTGAACTTCCAGAACTACATTCGCCCTCAACTGCGACACTCGGATGCGGAATCTTTTCGTTACCGTATCCGCCAATCCGTTTCCTCTCGTCCCAGCGGAGCACACGAAGAAATTATTCAACTTCAACGTCGTGTTGAAGACATGTTTGTGGCGAGACCCATCACTTGTCAACCGACTTCGGTTACTGTACATATGG</canonical_amplicon>
		<polymorphic_amplicon>TTCTATCTAAGTGAACATCCAAAATTGGCTAATTTCTACTAAACATTGGTAAATAGTGAACTTCCAGAACTACATTCGYCCTCAACTGCGACACTCGGATGCGGAATCTTTTCGTTACCGTATCCGCCAATCCGTTTCCTCTCGTCCCAGCGGAGCACACGAAGAAATTATTCAACTTCAACGTCGTGTTGAAGACATGTTTGTGGCGAGACCCATCACTTGTCAACCGACTTCGGTTACTGTACATATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19679</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>98210</contig_pos>
        <strand>+</strand>
        <context>TGCGGAATCT[A/T]TTCGTTACCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTTCCAGAACTACATTCGCCCTCAACTGCGACACTCGGATGCGGAATCT</left_flank>
        <right_flank>TTCGTTACCGTATCCGCCAATCCGTTTCCTCTCGTCCCAGCGGAGCACAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTAACGATTTATTTGGGAATTGGAGGAGAGTTGATGGAAAGTGCATATCGGATTAATTGCAATTTAATTCTGATGAAAATGATTCGGAATGTTCATCGATACCATCGATGGATTCCATTTTCGAGGACAGCTATTTATATAAAAAGTCTTTTGAGGGACAGTTGGAGACCAGTGGCGCCTATGGTAAATTGTCTCGCGCGTTATTTGTCAAGAGCTTCAAAATAAGAATAATCAGGTCCTACTTTTGGTTTTACTCGGGGCCGATTTAAACGGAAAATGTCAGAATGAGCGGAGCCTAATCGTGTTTATACTCATTTCGAAGCTTTTGACAAGTTGAATAAGAATATTCACTTCAAATTTTGAATTTCGTCTCATAAAATCTGTTGTATTCTATCTAAGTGAACATCCAAAATTGGCTAATTTCTACTAAACATTGGTAAATAGTGAACTTCCAGAACTACATTCGCCCTCAACTGCGACACTCGGATGCGGAATCTTTTCGTTACCGTATCCGCCAATCCGTTTCCTCTCGTCCCAGCGGAGCACACGAAGAAATTATTCAACTTCAACGTCGTGTTGAAGACATGTTTGTGGCGAGACCCATCACTTGTCAACCGACTTCGGTTACTGTACATATGGGATTGAGGAGGCCATCGTCGATGAGAAGTTGTCGAATTCCTGCGGATATTAATTTGAATGTTACGCAGGTGAGGTTTTTCAGATCTTTTTAACTAAATTCAGTTGTGGTGACCTCCTAGATTGGATTTCTAGGCCACCAGTCCTTTTTGTACTAAAATATTATCTTCAAAAAATTTCAGATCACTCGAGAACGTCCACCTCCTCTTCGAATAGCAACTGATTTTATAATAGATATGCCACTGGACACCCCCAGTCCTGTAGAAGAGGGCATTGCTCATAACAAGGATCTACCCCCCGACTACGATAGTTTGGAAGCTGCCGCTTTCAACTTTTCAGACACTTCACAACCACCGCCGTAC</canonical>
            <polymorphic>GTGTAACGATTTATTTGGGAATTGGAGGAGAGTTGATGGAAAGTGCATATCGGATTAATTGCAATTTAATTCTGATGAAAATGATTCGGAATGTTCATCGATACCATCGATGGATTCCATTTTCGAGGACAGCTATTTATATAAAAAGTCTTTTGAGGGACAGTTGGAGACCAGTGGCGCCTATGGTAAATTGTCTCGCGCGTTATTTGTCAAGAGCTTCAAAATAAGAATAATCAGGTCCTACTTTTGGTTTTACTCGGGGCCGATTTAAACGGAAAATGTCAGAATGAGCGGAGCCTAATCGTGTTTATACTCATTTCGAAGCTTTTGACAAGTTGAATAAGAATATTCACTTCAAATTTTGAATTTCGTCTCATAAAATCTGTTGTATTCTATCTAAGTGAACATCCAAAATTGGCTAATTTCTACTAAACATTGGTAAATAGTGAACTTCCAGAACTACATTCGCCCTCAACTGCGACACTCGGATGCGGAATCTWTTCGTTACCGTATCCGCCAATCCGTTTCCTCTCGTCCCAGCGGAGCACACGAAGAAATTATTCAACTTCAACGTCGTGTTGAAGACATGTTTGTGGCGAGACCCATCACTTGTCAACCGACTTCGGTTACTGTACATATGGGATTGAGGAGGCCATCGTCGATGAGAAGTTGTCGAATTCCTGCGGATATTAATTTGAATGTTACGCAGGTGAGGTTTTTCAGATCTTTTTAACTAAATTCAGTTGTGGTGACCTCCTAGATTGGATTTCTAGGCCACCAGTCCTTTTTGTACTAAAATATTATCTTCAAAAAATTTCAGATCACTCGAGAACGTCCACCTCCTCTTCGAATAGCAACTGATTTTATAATAGATATGCCACTGGACACCCCCAGTCCTGTAGAAGAGGGCATTGCTCATAACAAGGATCTACCCCCCGACTACGATAGTTTGGAAGCTGCCGCTTTCAACTTTTCAGACACTTCACAACCACCGCCGTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTATCTAAGTGAACATCCAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCATATGTACAGTAACCGAAGTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCTATCTAAGTGAACATCCAAAATTGGCTAATTTCTACTAAACATTGGTAAATAGTGAACTTCCAGAACTACATTCGCCCTCAACTGCGACACTCGGATGCGGAATCTTTTCGTTACCGTATCCGCCAATCCGTTTCCTCTCGTCCCAGCGGAGCACACGAAGAAATTATTCAACTTCAACGTCGTGTTGAAGACATGTTTGTGGCGAGACCCATCACTTGTCAACCGACTTCGGTTACTGTACATATGG</canonical_amplicon>
		<polymorphic_amplicon>TTCTATCTAAGTGAACATCCAAAATTGGCTAATTTCTACTAAACATTGGTAAATAGTGAACTTCCAGAACTACATTCGCCCTCAACTGCGACACTCGGATGCGGAATCTWTTCGTTACCGTATCCGCCAATCCGTTTCCTCTCGTCCCAGCGGAGCACACGAAGAAATTATTCAACTTCAACGTCGTGTTGAAGACATGTTTGTGGCGAGACCCATCACTTGTCAACCGACTTCGGTTACTGTACATATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19681</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>101182</contig_pos>
        <strand>+</strand>
        <context>AACATTTTGC[A/G]CAGAATTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTAGTTGTACCATATTCAAGGACGAATATAAATAATAAAACATTTTGC</left_flank>
        <right_flank>CAGAATTTGAATACCGTATTAATAGAGGTCCACCTTATACATTTACTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGGACCTCGGGCCAAGTTGGAAGACGCTCTCCGGCGCTGAAAGTGAATTGCAAGTATTCACAGACGCACTCGAAGGTTCTGTGGATGTGAAACATCGCTGTCACATCGCATCAACACTCGATATAATCCACAAACTTCAGTCTGCGCAGGTGCAGATGCAGGCAGTGCCATGATAATTTCCTGTGATCTTGGCAACATTGGCAAGTCCAACTACTTTGAACTAGTGGTCGAGTGTAGGGAAACCGAAGCTCCGTCTACGACCGTTACGTGGTTCAAAGGTGACTTCCTCGGTCATCGGCTGGGCCTAAGATAGATTCACAACGTTTCTCATAGAATAGTTGTCGAGTAGAGAGCGATCTCGAAGCGAGCGAACGGAAAGACGAGTTAAGCTTGAGCATCACGAGCGATGAGGAAATTTCGAAAACAGACGTTCCGAAAATTCTCCCACTTTTAGTTGTACCATATTCAAGGACGAATATAAATAATAAAACATTTTGCGCAGAATTTGAATACCGTATTAATAGAGGTCCACCTTATACATTTACTTTGAGCTCAATTATCTCGATTTCTAGTAGAGATACCAAAATGTTGTCAACTGATAAAATTTTTATCATAATATCACCGATATATATTTTGTTAGTTGACAGATTTCCTATATCACTTATAGGAACCGAGATAATTGAGTTCAAAATTGACCATGTGGGGTTAGCTTCTATTTGAAAATCCTGAATTTCCTGAGTTCTAAAACTTTGGCAAATACAACTTGGAGGCAAAACTACAGAAGAAGGCAAGTTAAGTGAAGCCAAGCTCCTGAATTCAAAATTCAATATTCTGAAAACCAGATAAATTGAGAAGCTAGAAGCTCTGAACACCGGAAATCTAAAAAATCCCGAAGTCTTAAGATTCCTAAATTTTTACTTTTTGGACTTTAAAATCCAAGTTTTTTTTTCCTATAACAGAATTTTATCCGAACCCTTAACTTTGAGCTCATTTATCTCG</canonical>
            <polymorphic>TCGGACCTCGGGCCAAGTTGGAAGACGCTCTCCGGCGCTGAAAGTGAATTGCAAGTATTCACAGACGCACTCGAAGGTTCTGTGGATGTGAAACATCGCTGTCACATCGCATCAACACTCGATATAATCCACAAACTTCAGTCTGCGCAGGTGCAGATGCAGGCAGTGCCATGATAATTTCCTGTGATCTTGGCAACATTGGCAAGTCCAACTACTTTGAACTAGTGGTCGAGTGTAGGGAAACCGAAGCTCCGTCTACGACCGTTACGTGGTTCAAAGGTGACTTCCTCGGTCATCGGCTGGGCCTAAGATAGATTCACAACGTTTCTCATAGAATAGTTGTCGAGTAGAGAGCGATCTCGAAGCGAGCGAACGGAAAGACGAGTTAAGCTTGAGCATCACGAGCGATGAGGAAATTTCGAAAACAGACGTTCCGAAAATTCTCCCACTTTTAGTTGTACCATATTCAAGGACGAATATAAATAATAAAACATTTTGCRCAGAATTTGAATACCGTATTAATAGAGGTCCACCTTATACATTTACTTTGAGCTCAATTATCTCGATTTCTAGTAGAGATACCAAAATGTTGTCAACTGATAAAATTTTTATCATAATATCACCGATATATATTTTGTTAGTTGACAGATTTCCTATATCACTTATAGGAACCGAGATAATTGAGTTCAAAATTGACCATGTGGGGTTAGCTTCTATTTGAAAATCCTGAATTTCCTGAGTTCTAAAACTTTGGCAAATACAACTTGGAGGCAAAACTACAGAAGAAGGCAAGTTAAGTGAAGCCAAGCTCCTGAATTCAAAATTCAATATTCTGAAAACCAGATAAATTGAGAAGCTAGAAGCTCTGAACACCGGAAATCTAAAAAATCCCGAAGTCTTAAGATTCCTAAATTTTTACTTTTTGGACTTTAAAATCCAAGTTTTTTTTTCCTATAACAGAATTTTATCCGAACCCTTAACTTTGAGCTCATTTATCTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCGCA</site>
                <isoschizomers>
                    <enzyme>Acc16I</enzyme>
                    <enzyme>AviII</enzyme>
                    <enzyme>FspI</enzyme>
                    <enzyme>MstI</enzyme>
                    <enzyme>NsbI</enzyme>
                </isoschizomers>
                <canonical_bands>501 353 146</canonical_bands>
                <polymorphic_bands>854 146</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 353 110 37</canonical_bands>
                <polymorphic_bands>853 110 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACTTTTAGTTGTACCATATTCA</pcr_primer_p1>
		<pcr_primer_p2>TTAGAACTCAGGAAATTCAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>CCACTTTTAGTTGTACCATATTCAAGGACGAATATAAATAATAAAACATTTTGCGCAGAATTTGAATACCGTATTAATAGAGGTCCACCTTATACATTTACTTTGAGCTCAATTATCTCGATTTCTAGTAGAGATACCAAAATGTTGTCAACTGATAAAATTTTTATCATAATATCACCGATATATATTTTGTTAGTTGACAGATTTCCTATATCACTTATAGGAACCGAGATAATTGAGTTCAAAATTGACCATGTGGGGTTAGCTTCTATTTGAAAATCCTGAATTTCCTGAGTTCTAA</canonical_amplicon>
		<polymorphic_amplicon>CCACTTTTAGTTGTACCATATTCAAGGACGAATATAAATAATAAAACATTTTGCRCAGAATTTGAATACCGTATTAATAGAGGTCCACCTTATACATTTACTTTGAGCTCAATTATCTCGATTTCTAGTAGAGATACCAAAATGTTGTCAACTGATAAAATTTTTATCATAATATCACCGATATATATTTTGTTAGTTGACAGATTTCCTATATCACTTATAGGAACCGAGATAATTGAGTTCAAAATTGACCATGTGGGGTTAGCTTCTATTTGAAAATCCTGAATTTCCTGAGTTCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19682</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>101586</contig_pos>
        <strand>+</strand>
        <context>AAGTCTTAAG[A/T]TTCCTAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGCTAGAAGCTCTGAACACCGGAAATCTAAAAAATCCCGAAGTCTTAAG</left_flank>
        <right_flank>TTCCTAAATTTTTACTTTTTGGACTTTAAAATCCAAGTTTTTTTTTCCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGATGAGGAAATTTCGAAAACAGACGTTCCGAAAATTCTCCCACTTTTAGTTGTACCATATTCAAGGACGAATATAAATAATAAAACATTTTGCGCAGAATTTGAATACCGTATTAATAGAGGTCCACCTTATACATTTACTTTGAGCTCAATTATCTCGATTTCTAGTAGAGATACCAAAATGTTGTCAACTGATAAAATTTTTATCATAATATCACCGATATATATTTTGTTAGTTGACAGATTTCCTATATCACTTATAGGAACCGAGATAATTGAGTTCAAAATTGACCATGTGGGGTTAGCTTCTATTTGAAAATCCTGAATTTCCTGAGTTCTAAAACTTTGGCAAATACAACTTGGAGGCAAAACTACAGAAGAAGGCAAGTTAAGTGAAGCCAAGCTCCTGAATTCAAAATTCAATATTCTGAAAACCAGATAAATTGAGAAGCTAGAAGCTCTGAACACCGGAAATCTAAAAAATCCCGAAGTCTTAAGATTCCTAAATTTTTACTTTTTGGACTTTAAAATCCAAGTTTTTTTTTCCTATAACAGAATTTTATCCGAACCCTTAACTTTGAGCTCATTTATCTCGGTTCCTATAATAGCTATCAAACATTTTATCTGTTAACAACTTTTTGATATCTTTTACAGAAACCGAGATAATTAAACCCAGAGTTAAAGGTTCGGATGGGCTTTTATTAAAGAAATATGGTAGTTTTTTACGTGAAATATTCCAAAATCGCAGTTTTCAAAATCAAAAAAAAATCTGAGAGGTCAGTAAAGAGAATCATAAGATCAGTTCAAAGTTTTAACTTCTCCGAATATGTCTATTTCATCTCAAAATCGAAGAAACTACAATTTGAGATAATCAAGTAAGAGAAGTAAGGTAATTGTCGATTGGCCGATTTCGAAAATCTGAAACTATTCAGAGCTCCTGTGAACAATGTTTAACAAATGTAGAATATCAAGGTGGCATCGAAATGCACTTTTTCTGGC</canonical>
            <polymorphic>GCGATGAGGAAATTTCGAAAACAGACGTTCCGAAAATTCTCCCACTTTTAGTTGTACCATATTCAAGGACGAATATAAATAATAAAACATTTTGCGCAGAATTTGAATACCGTATTAATAGAGGTCCACCTTATACATTTACTTTGAGCTCAATTATCTCGATTTCTAGTAGAGATACCAAAATGTTGTCAACTGATAAAATTTTTATCATAATATCACCGATATATATTTTGTTAGTTGACAGATTTCCTATATCACTTATAGGAACCGAGATAATTGAGTTCAAAATTGACCATGTGGGGTTAGCTTCTATTTGAAAATCCTGAATTTCCTGAGTTCTAAAACTTTGGCAAATACAACTTGGAGGCAAAACTACAGAAGAAGGCAAGTTAAGTGAAGCCAAGCTCCTGAATTCAAAATTCAATATTCTGAAAACCAGATAAATTGAGAAGCTAGAAGCTCTGAACACCGGAAATCTAAAAAATCCCGAAGTCTTAAGWTTCCTAAATTTTTACTTTTTGGACTTTAAAATCCAAGTTTTTTTTTCCTATAACAGAATTTTATCCGAACCCTTAACTTTGAGCTCATTTATCTCGGTTCCTATAATAGCTATCAAACATTTTATCTGTTAACAACTTTTTGATATCTTTTACAGAAACCGAGATAATTAAACCCAGAGTTAAAGGTTCGGATGGGCTTTTATTAAAGAAATATGGTAGTTTTTTACGTGAAATATTCCAAAATCGCAGTTTTCAAAATCAAAAAAAAATCTGAGAGGTCAGTAAAGAGAATCATAAGATCAGTTCAAAGTTTTAACTTCTCCGAATATGTCTATTTCATCTCAAAATCGAAGAAACTACAATTTGAGATAATCAAGTAAGAGAAGTAAGGTAATTGTCGATTGGCCGATTTCGAAAATCTGAAACTATTCAGAGCTCCTGTGAACAATGTTTAACAAATGTAGAATATCAAGGTGGCATCGAAATGCACTTTTTCTGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>499 290 211</canonical_bands>
                <polymorphic_bands>789 211</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>499 290 211</canonical_bands>
                <polymorphic_bands>789 211</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCTAGAAGCTCTGAACACC</pcr_primer_p1>
		<pcr_primer_p2>AAAACTGCGATTTTGGAATA</pcr_primer_p2>
		<pcr_amplicon_size>304</pcr_amplicon_size>
		<canonical_amplicon>AAGCTAGAAGCTCTGAACACCGGAAATCTAAAAAATCCCGAAGTCTTAAGATTCCTAAATTTTTACTTTTTGGACTTTAAAATCCAAGTTTTTTTTTCCTATAACAGAATTTTATCCGAACCCTTAACTTTGAGCTCATTTATCTCGGTTCCTATAATAGCTATCAAACATTTTATCTGTTAACAACTTTTTGATATCTTTTACAGAAACCGAGATAATTAAACCCAGAGTTAAAGGTTCGGATGGGCTTTTATTAAAGAAATATGGTAGTTTTTTACGTGAAATATTCCAAAATCGCAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAGCTAGAAGCTCTGAACACCGGAAATCTAAAAAATCCCGAAGTCTTAAGWTTCCTAAATTTTTACTTTTTGGACTTTAAAATCCAAGTTTTTTTTTCCTATAACAGAATTTTATCCGAACCCTTAACTTTGAGCTCATTTATCTCGGTTCCTATAATAGCTATCAAACATTTTATCTGTTAACAACTTTTTGATATCTTTTACAGAAACCGAGATAATTAAACCCAGAGTTAAAGGTTCGGATGGGCTTTTATTAAAGAAATATGGTAGTTTTTTACGTGAAATATTCCAAAATCGCAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19683</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>101468</contig_pos>
        <strand>+</strand>
        <context>ACTACAGAAG[A/T]AGGCAAGTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGAGTTCTAAAACTTTGGCAAATACAACTTGGAGGCAAAACTACAGAAG</left_flank>
        <right_flank>AGGCAAGTTAAGTGAAGCCAAGCTCCTGAATTCAAAATTCAATATTCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCGGTCATCGGCTGGGCCTAAGATAGATTCACAACGTTTCTCATAGAATAGTTGTCGAGTAGAGAGCGATCTCGAAGCGAGCGAACGGAAAGACGAGTTAAGCTTGAGCATCACGAGCGATGAGGAAATTTCGAAAACAGACGTTCCGAAAATTCTCCCACTTTTAGTTGTACCATATTCAAGGACGAATATAAATAATAAAACATTTTGCGCAGAATTTGAATACCGTATTAATAGAGGTCCACCTTATACATTTACTTTGAGCTCAATTATCTCGATTTCTAGTAGAGATACCAAAATGTTGTCAACTGATAAAATTTTTATCATAATATCACCGATATATATTTTGTTAGTTGACAGATTTCCTATATCACTTATAGGAACCGAGATAATTGAGTTCAAAATTGACCATGTGGGGTTAGCTTCTATTTGAAAATCCTGAATTTCCTGAGTTCTAAAACTTTGGCAAATACAACTTGGAGGCAAAACTACAGAAGAAGGCAAGTTAAGTGAAGCCAAGCTCCTGAATTCAAAATTCAATATTCTGAAAACCAGATAAATTGAGAAGCTAGAAGCTCTGAACACCGGAAATCTAAAAAATCCCGAAGTCTTAAGATTCCTAAATTTTTACTTTTTGGACTTTAAAATCCAAGTTTTTTTTTCCTATAACAGAATTTTATCCGAACCCTTAACTTTGAGCTCATTTATCTCGGTTCCTATAATAGCTATCAAACATTTTATCTGTTAACAACTTTTTGATATCTTTTACAGAAACCGAGATAATTAAACCCAGAGTTAAAGGTTCGGATGGGCTTTTATTAAAGAAATATGGTAGTTTTTTACGTGAAATATTCCAAAATCGCAGTTTTCAAAATCAAAAAAAAATCTGAGAGGTCAGTAAAGAGAATCATAAGATCAGTTCAAAGTTTTAACTTCTCCGAATATGTCTATTTCATCTCAAAATCGAAGAAACTACAATTTGAGATAATCAAGTAAGA</canonical>
            <polymorphic>CCTCGGTCATCGGCTGGGCCTAAGATAGATTCACAACGTTTCTCATAGAATAGTTGTCGAGTAGAGAGCGATCTCGAAGCGAGCGAACGGAAAGACGAGTTAAGCTTGAGCATCACGAGCGATGAGGAAATTTCGAAAACAGACGTTCCGAAAATTCTCCCACTTTTAGTTGTACCATATTCAAGGACGAATATAAATAATAAAACATTTTGCGCAGAATTTGAATACCGTATTAATAGAGGTCCACCTTATACATTTACTTTGAGCTCAATTATCTCGATTTCTAGTAGAGATACCAAAATGTTGTCAACTGATAAAATTTTTATCATAATATCACCGATATATATTTTGTTAGTTGACAGATTTCCTATATCACTTATAGGAACCGAGATAATTGAGTTCAAAATTGACCATGTGGGGTTAGCTTCTATTTGAAAATCCTGAATTTCCTGAGTTCTAAAACTTTGGCAAATACAACTTGGAGGCAAAACTACAGAAGWAGGCAAGTTAAGTGAAGCCAAGCTCCTGAATTCAAAATTCAATATTCTGAAAACCAGATAAATTGAGAAGCTAGAAGCTCTGAACACCGGAAATCTAAAAAATCCCGAAGTCTTAAGATTCCTAAATTTTTACTTTTTGGACTTTAAAATCCAAGTTTTTTTTTCCTATAACAGAATTTTATCCGAACCCTTAACTTTGAGCTCATTTATCTCGGTTCCTATAATAGCTATCAAACATTTTATCTGTTAACAACTTTTTGATATCTTTTACAGAAACCGAGATAATTAAACCCAGAGTTAAAGGTTCGGATGGGCTTTTATTAAAGAAATATGGTAGTTTTTTACGTGAAATATTCCAAAATCGCAGTTTTCAAAATCAAAAAAAAATCTGAGAGGTCAGTAAAGAGAATCATAAGATCAGTTCAAAGTTTTAACTTCTCCGAATATGTCTATTTCATCTCAAAATCGAAGAAACTACAATTTGAGATAATCAAGTAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCCTGAATTTCCTGAGTTCTA</pcr_primer_p1>
		<pcr_primer_p2>GATTTTAAAGTCCAAAAAGTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>215</pcr_amplicon_size>
		<canonical_amplicon>AATCCTGAATTTCCTGAGTTCTAAAACTTTGGCAAATACAACTTGGAGGCAAAACTACAGAAGAAGGCAAGTTAAGTGAAGCCAAGCTCCTGAATTCAAAATTCAATATTCTGAAAACCAGATAAATTGAGAAGCTAGAAGCTCTGAACACCGGAAATCTAAAAAATCCCGAAGTCTTAAGATTCCTAAATTTTTACTTTTTGGACTTTAAAATC</canonical_amplicon>
		<polymorphic_amplicon>AATCCTGAATTTCCTGAGTTCTAAAACTTTGGCAAATACAACTTGGAGGCAAAACTACAGAAGWAGGCAAGTTAAGTGAAGCCAAGCTCCTGAATTCAAAATTCAATATTCTGAAAACCAGATAAATTGAGAAGCTAGAAGCTCTGAACACCGGAAATCTAAAAAATCCCGAAGTCTTAAGATTCCTAAATTTTTACTTTTTGGACTTTAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19684</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>101451</contig_pos>
        <strand>+</strand>
        <context>TACAACTTGG[A/G]GGCAAAACTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAAATCCTGAATTTCCTGAGTTCTAAAACTTTGGCAAATACAACTTGG</left_flank>
        <right_flank>GGCAAAACTACAGAAGAAGGCAAGTTAAGTGAAGCCAAGCTCCTGAATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTTCAAAGGTGACTTCCTCGGTCATCGGCTGGGCCTAAGATAGATTCACAACGTTTCTCATAGAATAGTTGTCGAGTAGAGAGCGATCTCGAAGCGAGCGAACGGAAAGACGAGTTAAGCTTGAGCATCACGAGCGATGAGGAAATTTCGAAAACAGACGTTCCGAAAATTCTCCCACTTTTAGTTGTACCATATTCAAGGACGAATATAAATAATAAAACATTTTGCGCAGAATTTGAATACCGTATTAATAGAGGTCCACCTTATACATTTACTTTGAGCTCAATTATCTCGATTTCTAGTAGAGATACCAAAATGTTGTCAACTGATAAAATTTTTATCATAATATCACCGATATATATTTTGTTAGTTGACAGATTTCCTATATCACTTATAGGAACCGAGATAATTGAGTTCAAAATTGACCATGTGGGGTTAGCTTCTATTTGAAAATCCTGAATTTCCTGAGTTCTAAAACTTTGGCAAATACAACTTGGAGGCAAAACTACAGAAGAAGGCAAGTTAAGTGAAGCCAAGCTCCTGAATTCAAAATTCAATATTCTGAAAACCAGATAAATTGAGAAGCTAGAAGCTCTGAACACCGGAAATCTAAAAAATCCCGAAGTCTTAAGATTCCTAAATTTTTACTTTTTGGACTTTAAAATCCAAGTTTTTTTTTCCTATAACAGAATTTTATCCGAACCCTTAACTTTGAGCTCATTTATCTCGGTTCCTATAATAGCTATCAAACATTTTATCTGTTAACAACTTTTTGATATCTTTTACAGAAACCGAGATAATTAAACCCAGAGTTAAAGGTTCGGATGGGCTTTTATTAAAGAAATATGGTAGTTTTTTACGTGAAATATTCCAAAATCGCAGTTTTCAAAATCAAAAAAAAATCTGAGAGGTCAGTAAAGAGAATCATAAGATCAGTTCAAAGTTTTAACTTCTCCGAATATGTCTATTTCATCTCAAAATCGAAGAAACTACAATTT</canonical>
            <polymorphic>TGGTTCAAAGGTGACTTCCTCGGTCATCGGCTGGGCCTAAGATAGATTCACAACGTTTCTCATAGAATAGTTGTCGAGTAGAGAGCGATCTCGAAGCGAGCGAACGGAAAGACGAGTTAAGCTTGAGCATCACGAGCGATGAGGAAATTTCGAAAACAGACGTTCCGAAAATTCTCCCACTTTTAGTTGTACCATATTCAAGGACGAATATAAATAATAAAACATTTTGCGCAGAATTTGAATACCGTATTAATAGAGGTCCACCTTATACATTTACTTTGAGCTCAATTATCTCGATTTCTAGTAGAGATACCAAAATGTTGTCAACTGATAAAATTTTTATCATAATATCACCGATATATATTTTGTTAGTTGACAGATTTCCTATATCACTTATAGGAACCGAGATAATTGAGTTCAAAATTGACCATGTGGGGTTAGCTTCTATTTGAAAATCCTGAATTTCCTGAGTTCTAAAACTTTGGCAAATACAACTTGGRGGCAAAACTACAGAAGAAGGCAAGTTAAGTGAAGCCAAGCTCCTGAATTCAAAATTCAATATTCTGAAAACCAGATAAATTGAGAAGCTAGAAGCTCTGAACACCGGAAATCTAAAAAATCCCGAAGTCTTAAGATTCCTAAATTTTTACTTTTTGGACTTTAAAATCCAAGTTTTTTTTTCCTATAACAGAATTTTATCCGAACCCTTAACTTTGAGCTCATTTATCTCGGTTCCTATAATAGCTATCAAACATTTTATCTGTTAACAACTTTTTGATATCTTTTACAGAAACCGAGATAATTAAACCCAGAGTTAAAGGTTCGGATGGGCTTTTATTAAAGAAATATGGTAGTTTTTTACGTGAAATATTCCAAAATCGCAGTTTTCAAAATCAAAAAAAAATCTGAGAGGTCAGTAAAGAGAATCATAAGATCAGTTCAAAGTTTTAACTTCTCCGAATATGTCTATTTCATCTCAAAATCGAAGAAACTACAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGGACGAATATAAATAATAAAACA</pcr_primer_p1>
		<pcr_primer_p2>TCAATTTATCTGGTTTTCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>385</pcr_amplicon_size>
		<canonical_amplicon>CAAGGACGAATATAAATAATAAAACATTTTGCGCAGAATTTGAATACCGTATTAATAGAGGTCCACCTTATACATTTACTTTGAGCTCAATTATCTCGATTTCTAGTAGAGATACCAAAATGTTGTCAACTGATAAAATTTTTATCATAATATCACCGATATATATTTTGTTAGTTGACAGATTTCCTATATCACTTATAGGAACCGAGATAATTGAGTTCAAAATTGACCATGTGGGGTTAGCTTCTATTTGAAAATCCTGAATTTCCTGAGTTCTAAAACTTTGGCAAATACAACTTGGAGGCAAAACTACAGAAGAAGGCAAGTTAAGTGAAGCCAAGCTCCTGAATTCAAAATTCAATATTCTGAAAACCAGATAAATTGA</canonical_amplicon>
		<polymorphic_amplicon>CAAGGACGAATATAAATAATAAAACATTTTGCGCAGAATTTGAATACCGTATTAATAGAGGTCCACCTTATACATTTACTTTGAGCTCAATTATCTCGATTTCTAGTAGAGATACCAAAATGTTGTCAACTGATAAAATTTTTATCATAATATCACCGATATATATTTTGTTAGTTGACAGATTTCCTATATCACTTATAGGAACCGAGATAATTGAGTTCAAAATTGACCATGTGGGGTTAGCTTCTATTTGAAAATCCTGAATTTCCTGAGTTCTAAAACTTTGGCAAATACAACTTGGRGGCAAAACTACAGAAGAAGGCAAGTTAAGTGAAGCCAAGCTCCTGAATTCAAAATTCAATATTCTGAAAACCAGATAAATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19685</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>207354</contig_pos>
        <strand>+</strand>
        <context>GCCTTGGAAA[G/T]TAAAAAAGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATGTGATTTTTTAGTTTCTCGGTTCACCAAATTTCACATGCCTTGGAAA</left_flank>
        <right_flank>TAAAAAAGTAGTTCAAAAATTTTGCTAATGAAAATGTTTCAATGGGATTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAATAGAAGAATCTCCAGCCCGTCAAGTTTGAACTCATATATCTCGATTCCTGTGCAAGATATCAAAAAAGTATGAACTGATAAAATGTTCGTGATAGTATGATAAACTATTTATTAGTAAACAAATTTTTAATATCTTTAACAGGAAGCAAGATAAATTCGCTCAAAGTTAAAAGTTAGCGGCATCTTAATTTTTTAAATTAGAAAGATTGAATTCGGGAATTCTCGGGTTTCGCTTATTCAAAAAGCAATTAAATTCTCATTGCACCAGAAAAAAAATTTAAATTCTGTTTCACAAAAAAAGTAAATCTTCCAAAATACTTGTGGATGTTGATGTGACGGCTGTCTTTTCTTTTTTCTTTGTGATACAAGACATTTCAGAAAATTTGTTATTTTTTAGTTATTTGATTTGTTTCCAAAAATGTTATGTTTCGCTGAAAATTAAGAATATGTGATTTTTTAGTTTCTCGGTTCACCAAATTTCACATGCCTTGGAAAGTAAAAAAGTAGTTCAAAAATTTTGCTAATGAAAATGTTTCAATGGGATTGTACTACTGTGAAACCTGTAACAGAAGGGCACCCACACTGACTAGTATGAGCTCAATTATCCCAATTTCTATTAGATATATCAAAAATGTGACAACTTCTAAAACGTTCATCATAATATCAGAAGTGTTTTATCAGTTGACCAATTTTTGACATTTTGCGCAGGAATAGATATAATTGAGTTCAAACTTGAGGACTCTTCTTTTACTTCGTGTTGTAGCTACTGTAATTTCTTACATTTTCAATATTTCTGTTTCAAAAATCTAATTTCAGTTAAAAATTATTTTTAATTCTAATCAGCTTTGGTTTAGATGAAAGTACTGAAAATCAATTTCTAAATAAAATTACACTTTCAAAAACCCTTATTGCTTCTCTGCAACTTCAATTTTCGCTAGCATCTTAAAAACACCGGCCACATGAATTTTCCAACGAAGAATCCAGCCGCCATTCCGG</canonical>
            <polymorphic>GTAATAGAAGAATCTCCAGCCCGTCAAGTTTGAACTCATATATCTCGATTCCTGTGCAAGATATCAAAAAAGTATGAACTGATAAAATGTTCGTGATAGTATGATAAACTATTTATTAGTAAACAAATTTTTAATATCTTTAACAGGAAGCAAGATAAATTCGCTCAAAGTTAAAAGTTAGCGGCATCTTAATTTTTTAAATTAGAAAGATTGAATTCGGGAATTCTCGGGTTTCGCTTATTCAAAAAGCAATTAAATTCTCATTGCACCAGAAAAAAAATTTAAATTCTGTTTCACAAAAAAAGTAAATCTTCCAAAATACTTGTGGATGTTGATGTGACGGCTGTCTTTTCTTTTTTCTTTGTGATACAAGACATTTCAGAAAATTTGTTATTTTTTAGTTATTTGATTTGTTTCCAAAAATGTTATGTTTCGCTGAAAATTAAGAATATGTGATTTTTTAGTTTCTCGGTTCACCAAATTTCACATGCCTTGGAAAKTAAAAAAGTAGTTCAAAAATTTTGCTAATGAAAATGTTTCAATGGGATTGTACTACTGTGAAACCTGTAACAGAAGGGCACCCACACTGACTAGTATGAGCTCAATTATCCCAATTTCTATTAGATATATCAAAAATGTGACAACTTCTAAAACGTTCATCATAATATCAGAAGTGTTTTATCAGTTGACCAATTTTTGACATTTTGCGCAGGAATAGATATAATTGAGTTCAAACTTGAGGACTCTTCTTTTACTTCGTGTTGTAGCTACTGTAATTTCTTACATTTTCAATATTTCTGTTTCAAAAATCTAATTTCAGTTAAAAATTATTTTTAATTCTAATCAGCTTTGGTTTAGATGAAAGTACTGAAAATCAATTTCTAAATAAAATTACACTTTCAAAAACCCTTATTGCTTCTCTGCAACTTCAATTTTCGCTAGCATCTTAAAAACACCGGCCACATGAATTTTCCAACGAAGAATCCAGCCGCCATTCCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATACTTGTGGATGTTGATGT</pcr_primer_p1>
		<pcr_primer_p2>AGTACAATCCCATTGAAACATT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AAAATACTTGTGGATGTTGATGTGACGGCTGTCTTTTCTTTTTTCTTTGTGATACAAGACATTTCAGAAAATTTGTTATTTTTTAGTTATTTGATTTGTTTCCAAAAATGTTATGTTTCGCTGAAAATTAAGAATATGTGATTTTTTAGTTTCTCGGTTCACCAAATTTCACATGCCTTGGAAAGTAAAAAAGTAGTTCAAAAATTTTGCTAATGAAAATGTTTCAATGGGATTGTACT</canonical_amplicon>
		<polymorphic_amplicon>AAAATACTTGTGGATGTTGATGTGACGGCTGTCTTTTCTTTTTTCTTTGTGATACAAGACATTTCAGAAAATTTGTTATTTTTTAGTTATTTGATTTGTTTCCAAAAATGTTATGTTTCGCTGAAAATTAAGAATATGTGATTTTTTAGTTTCTCGGTTCACCAAATTTCACATGCCTTGGAAAKTAAAAAAGTAGTTCAAAAATTTTGCTAATGAAAATGTTTCAATGGGATTGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19686</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>207368</contig_pos>
        <strand>+</strand>
        <context>AAAAGTAGTT[A/C]AAAAATTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTTCTCGGTTCACCAAATTTCACATGCCTTGGAAAGTAAAAAAGTAGTT</left_flank>
        <right_flank>AAAAATTTTGCTAATGAAAATGTTTCAATGGGATTGTACTACTGTGAAAC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAGCCCGTCAAGTTTGAACTCATATATCTCGATTCCTGTGCAAGATATCAAAAAAGTATGAACTGATAAAATGTTCGTGATAGTATGATAAACTATTTATTAGTAAACAAATTTTTAATATCTTTAACAGGAAGCAAGATAAATTCGCTCAAAGTTAAAAGTTAGCGGCATCTTAATTTTTTAAATTAGAAAGATTGAATTCGGGAATTCTCGGGTTTCGCTTATTCAAAAAGCAATTAAATTCTCATTGCACCAGAAAAAAAATTTAAATTCTGTTTCACAAAAAAAGTAAATCTTCCAAAATACTTGTGGATGTTGATGTGACGGCTGTCTTTTCTTTTTTCTTTGTGATACAAGACATTTCAGAAAATTTGTTATTTTTTAGTTATTTGATTTGTTTCCAAAAATGTTATGTTTCGCTGAAAATTAAGAATATGTGATTTTTTAGTTTCTCGGTTCACCAAATTTCACATGCCTTGGAAAGTAAAAAAGTAGTTCAAAAATTTTGCTAATGAAAATGTTTCAATGGGATTGTACTACTGTGAAACCTGTAACAGAAGGGCACCCACACTGACTAGTATGAGCTCAATTATCCCAATTTCTATTAGATATATCAAAAATGTGACAACTTCTAAAACGTTCATCATAATATCAGAAGTGTTTTATCAGTTGACCAATTTTTGACATTTTGCGCAGGAATAGATATAATTGAGTTCAAACTTGAGGACTCTTCTTTTACTTCGTGTTGTAGCTACTGTAATTTCTTACATTTTCAATATTTCTGTTTCAAAAATCTAATTTCAGTTAAAAATTATTTTTAATTCTAATCAGCTTTGGTTTAGATGAAAGTACTGAAAATCAATTTCTAAATAAAATTACACTTTCAAAAACCCTTATTGCTTCTCTGCAACTTCAATTTTCGCTAGCATCTTAAAAACACCGGCCACATGAATTTTCCAACGAAGAATCCAGCCGCCATTCCGGATGGCCATTATCCC</canonical>
            <polymorphic>TCCAGCCCGTCAAGTTTGAACTCATATATCTCGATTCCTGTGCAAGATATCAAAAAAGTATGAACTGATAAAATGTTCGTGATAGTATGATAAACTATTTATTAGTAAACAAATTTTTAATATCTTTAACAGGAAGCAAGATAAATTCGCTCAAAGTTAAAAGTTAGCGGCATCTTAATTTTTTAAATTAGAAAGATTGAATTCGGGAATTCTCGGGTTTCGCTTATTCAAAAAGCAATTAAATTCTCATTGCACCAGAAAAAAAATTTAAATTCTGTTTCACAAAAAAAGTAAATCTTCCAAAATACTTGTGGATGTTGATGTGACGGCTGTCTTTTCTTTTTTCTTTGTGATACAAGACATTTCAGAAAATTTGTTATTTTTTAGTTATTTGATTTGTTTCCAAAAATGTTATGTTTCGCTGAAAATTAAGAATATGTGATTTTTTAGTTTCTCGGTTCACCAAATTTCACATGCCTTGGAAAGTAAAAAAGTAGTTMAAAAATTTTGCTAATGAAAATGTTTCAATGGGATTGTACTACTGTGAAACCTGTAACAGAAGGGCACCCACACTGACTAGTATGAGCTCAATTATCCCAATTTCTATTAGATATATCAAAAATGTGACAACTTCTAAAACGTTCATCATAATATCAGAAGTGTTTTATCAGTTGACCAATTTTTGACATTTTGCGCAGGAATAGATATAATTGAGTTCAAACTTGAGGACTCTTCTTTTACTTCGTGTTGTAGCTACTGTAATTTCTTACATTTTCAATATTTCTGTTTCAAAAATCTAATTTCAGTTAAAAATTATTTTTAATTCTAATCAGCTTTGGTTTAGATGAAAGTACTGAAAATCAATTTCTAAATAAAATTACACTTTCAAAAACCCTTATTGCTTCTCTGCAACTTCAATTTTCGCTAGCATCTTAAAAACACCGGCCACATGAATTTTCCAACGAAGAATCCAGCCGCCATTCCGGATGGCCATTATCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTTCTCGGTTCACCAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAACAGAAATATTGAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>345</pcr_amplicon_size>
		<canonical_amplicon>AGTTTCTCGGTTCACCAAATTTCACATGCCTTGGAAAGTAAAAAAGTAGTTCAAAAATTTTGCTAATGAAAATGTTTCAATGGGATTGTACTACTGTGAAACCTGTAACAGAAGGGCACCCACACTGACTAGTATGAGCTCAATTATCCCAATTTCTATTAGATATATCAAAAATGTGACAACTTCTAAAACGTTCATCATAATATCAGAAGTGTTTTATCAGTTGACCAATTTTTGACATTTTGCGCAGGAATAGATATAATTGAGTTCAAACTTGAGGACTCTTCTTTTACTTCGTGTTGTAGCTACTGTAATTTCTTACATTTTCAATATTTCTGTTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>AGTTTCTCGGTTCACCAAATTTCACATGCCTTGGAAAGTAAAAAAGTAGTTMAAAAATTTTGCTAATGAAAATGTTTCAATGGGATTGTACTACTGTGAAACCTGTAACAGAAGGGCACCCACACTGACTAGTATGAGCTCAATTATCCCAATTTCTATTAGATATATCAAAAATGTGACAACTTCTAAAACGTTCATCATAATATCAGAAGTGTTTTATCAGTTGACCAATTTTTGACATTTTGCGCAGGAATAGATATAATTGAGTTCAAACTTGAGGACTCTTCTTTTACTTCGTGTTGTAGCTACTGTAATTTCTTACATTTTCAATATTTCTGTTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19687</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>207688</contig_pos>
        <strand>+</strand>
        <context>AAAATTATTT[C/T]TAATTCTAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATTTTCAATATTTCTGTTTCAAAAATCTAATTTCAGTTAAAAATTATTT</left_flank>
        <right_flank>TAATTCTAATCAGCTTTGGTTTAGATGAAAGTACTGAAAATCAATTTCTA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTGACGGCTGTCTTTTCTTTTTTCTTTGTGATACAAGACATTTCAGAAAATTTGTTATTTTTTAGTTATTTGATTTGTTTCCAAAAATGTTATGTTTCGCTGAAAATTAAGAATATGTGATTTTTTAGTTTCTCGGTTCACCAAATTTCACATGCCTTGGAAAGTAAAAAAGTAGTTCAAAAATTTTGCTAATGAAAATGTTTCAATGGGATTGTACTACTGTGAAACCTGTAACAGAAGGGCACCCACACTGACTAGTATGAGCTCAATTATCCCAATTTCTATTAGATATATCAAAAATGTGACAACTTCTAAAACGTTCATCATAATATCAGAAGTGTTTTATCAGTTGACCAATTTTTGACATTTTGCGCAGGAATAGATATAATTGAGTTCAAACTTGAGGACTCTTCTTTTACTTCGTGTTGTAGCTACTGTAATTTCTTACATTTTCAATATTTCTGTTTCAAAAATCTAATTTCAGTTAAAAATTATTTTTAATTCTAATCAGCTTTGGTTTAGATGAAAGTACTGAAAATCAATTTCTAAATAAAATTACACTTTCAAAAACCCTTATTGCTTCTCTGCAACTTCAATTTTCGCTAGCATCTTAAAAACACCGGCCACATGAATTTTCCAACGAAGAATCCAGCCGCCATTCCGGATGGCCATTATCCCCATTTTTTGCCACCGAACCTTATAATTTTTATGACGTAGTGGCAAATTGGATATACACCCCCAAACTATTACCACCCAATTACATAAAAACTTTCCCCTCGAACTTTTTTATATGTCTATTAAAAAGAGATATTAAACTTTCACTAAGAGATCATGAAAGTTTAATGGTTAGCTACTGTAAACTTAGAGCCAATATATCTTGCTTCTTGTCAAAGATACAAAAAAGTTGTCAACTAATAAAGTGTTTATTATAAAATCACAAACATTTTATCAGTTGACCCATTTTTGATATATTGCACAAGAACAGAGATATATGGGCT</canonical>
            <polymorphic>ATGTGACGGCTGTCTTTTCTTTTTTCTTTGTGATACAAGACATTTCAGAAAATTTGTTATTTTTTAGTTATTTGATTTGTTTCCAAAAATGTTATGTTTCGCTGAAAATTAAGAATATGTGATTTTTTAGTTTCTCGGTTCACCAAATTTCACATGCCTTGGAAAGTAAAAAAGTAGTTCAAAAATTTTGCTAATGAAAATGTTTCAATGGGATTGTACTACTGTGAAACCTGTAACAGAAGGGCACCCACACTGACTAGTATGAGCTCAATTATCCCAATTTCTATTAGATATATCAAAAATGTGACAACTTCTAAAACGTTCATCATAATATCAGAAGTGTTTTATCAGTTGACCAATTTTTGACATTTTGCGCAGGAATAGATATAATTGAGTTCAAACTTGAGGACTCTTCTTTTACTTCGTGTTGTAGCTACTGTAATTTCTTACATTTTCAATATTTCTGTTTCAAAAATCTAATTTCAGTTAAAAATTATTTYTAATTCTAATCAGCTTTGGTTTAGATGAAAGTACTGAAAATCAATTTCTAAATAAAATTACACTTTCAAAAACCCTTATTGCTTCTCTGCAACTTCAATTTTCGCTAGCATCTTAAAAACACCGGCCACATGAATTTTCCAACGAAGAATCCAGCCGCCATTCCGGATGGCCATTATCCCCATTTTTTGCCACCGAACCTTATAATTTTTATGACGTAGTGGCAAATTGGATATACACCCCCAAACTATTACCACCCAATTACATAAAAACTTTCCCCTCGAACTTTTTTATATGTCTATTAAAAAGAGATATTAAACTTTCACTAAGAGATCATGAAAGTTTAATGGTTAGCTACTGTAAACTTAGAGCCAATATATCTTGCTTCTTGTCAAAGATACAAAAAAGTTGTCAACTAATAAAGTGTTTATTATAAAATCACAAACATTTTATCAGTTGACCCATTTTTGATATATTGCACAAGAACAGAGATATATGGGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>378 187 158 113 109 29 13 13</canonical_bands>
                <polymorphic_bands>378 187 158 126 109 29 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTGTTGTAGCTACTGTAATTTCT</pcr_primer_p1>
		<pcr_primer_p2>ATTCTTCGTTGGAAAATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>CGTGTTGTAGCTACTGTAATTTCTTACATTTTCAATATTTCTGTTTCAAAAATCTAATTTCAGTTAAAAATTATTTTTAATTCTAATCAGCTTTGGTTTAGATGAAAGTACTGAAAATCAATTTCTAAATAAAATTACACTTTCAAAAACCCTTATTGCTTCTCTGCAACTTCAATTTTCGCTAGCATCTTAAAAACACCGGCCACATGAATTTTCCAACGAAGAAT</canonical_amplicon>
		<polymorphic_amplicon>CGTGTTGTAGCTACTGTAATTTCTTACATTTTCAATATTTCTGTTTCAAAAATCTAATTTCAGTTAAAAATTATTTYTAATTCTAATCAGCTTTGGTTTAGATGAAAGTACTGAAAATCAATTTCTAAATAAAATTACACTTTCAAAAACCCTTATTGCTTCTCTGCAACTTCAATTTTCGCTAGCATCTTAAAAACACCGGCCACATGAATTTTCCAACGAAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19688</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>207798</contig_pos>
        <strand>+</strand>
        <context>TTTCGCTAGC[A/T]TCTTAAAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACACTTTCAAAAACCCTTATTGCTTCTCTGCAACTTCAATTTTCGCTAGC</left_flank>
        <right_flank>TCTTAAAAACACCGGCCACATGAATTTTCCAACGAAGAATCCAGCCGCCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAATATGTGATTTTTTAGTTTCTCGGTTCACCAAATTTCACATGCCTTGGAAAGTAAAAAAGTAGTTCAAAAATTTTGCTAATGAAAATGTTTCAATGGGATTGTACTACTGTGAAACCTGTAACAGAAGGGCACCCACACTGACTAGTATGAGCTCAATTATCCCAATTTCTATTAGATATATCAAAAATGTGACAACTTCTAAAACGTTCATCATAATATCAGAAGTGTTTTATCAGTTGACCAATTTTTGACATTTTGCGCAGGAATAGATATAATTGAGTTCAAACTTGAGGACTCTTCTTTTACTTCGTGTTGTAGCTACTGTAATTTCTTACATTTTCAATATTTCTGTTTCAAAAATCTAATTTCAGTTAAAAATTATTTTTAATTCTAATCAGCTTTGGTTTAGATGAAAGTACTGAAAATCAATTTCTAAATAAAATTACACTTTCAAAAACCCTTATTGCTTCTCTGCAACTTCAATTTTCGCTAGCATCTTAAAAACACCGGCCACATGAATTTTCCAACGAAGAATCCAGCCGCCATTCCGGATGGCCATTATCCCCATTTTTTGCCACCGAACCTTATAATTTTTATGACGTAGTGGCAAATTGGATATACACCCCCAAACTATTACCACCCAATTACATAAAAACTTTCCCCTCGAACTTTTTTATATGTCTATTAAAAAGAGATATTAAACTTTCACTAAGAGATCATGAAAGTTTAATGGTTAGCTACTGTAAACTTAGAGCCAATATATCTTGCTTCTTGTCAAAGATACAAAAAAGTTGTCAACTAATAAAGTGTTTATTATAAAATCACAAACATTTTATCAGTTGACCCATTTTTGATATATTGCACAAGAACAGAGATATATGGGCTCAAAGTTGGAAGGTTAGAAAGTTGATGAGAAAATTCGAATTTAATAATATTTTAAATTTTTTCAGTCACAACAATTTGGGATTTCAATACGTCCTAGAAGCTCCAATTTC</canonical>
            <polymorphic>AAGAATATGTGATTTTTTAGTTTCTCGGTTCACCAAATTTCACATGCCTTGGAAAGTAAAAAAGTAGTTCAAAAATTTTGCTAATGAAAATGTTTCAATGGGATTGTACTACTGTGAAACCTGTAACAGAAGGGCACCCACACTGACTAGTATGAGCTCAATTATCCCAATTTCTATTAGATATATCAAAAATGTGACAACTTCTAAAACGTTCATCATAATATCAGAAGTGTTTTATCAGTTGACCAATTTTTGACATTTTGCGCAGGAATAGATATAATTGAGTTCAAACTTGAGGACTCTTCTTTTACTTCGTGTTGTAGCTACTGTAATTTCTTACATTTTCAATATTTCTGTTTCAAAAATCTAATTTCAGTTAAAAATTATTTTTAATTCTAATCAGCTTTGGTTTAGATGAAAGTACTGAAAATCAATTTCTAAATAAAATTACACTTTCAAAAACCCTTATTGCTTCTCTGCAACTTCAATTTTCGCTAGCWTCTTAAAAACACCGGCCACATGAATTTTCCAACGAAGAATCCAGCCGCCATTCCGGATGGCCATTATCCCCATTTTTTGCCACCGAACCTTATAATTTTTATGACGTAGTGGCAAATTGGATATACACCCCCAAACTATTACCACCCAATTACATAAAAACTTTCCCCTCGAACTTTTTTATATGTCTATTAAAAAGAGATATTAAACTTTCACTAAGAGATCATGAAAGTTTAATGGTTAGCTACTGTAAACTTAGAGCCAATATATCTTGCTTCTTGTCAAAGATACAAAAAAGTTGTCAACTAATAAAGTGTTTATTATAAAATCACAAACATTTTATCAGTTGACCCATTTTTGATATATTGCACAAGAACAGAGATATATGGGCTCAAAGTTGGAAGGTTAGAAAGTTGATGAGAAAATTCGAATTTAATAATATTTTAAATTTTTTCAGTCACAACAATTTGGGATTTCAATACGTCCTAGAAGCTCCAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGGTTTAGATGAAAGTACTGAA</pcr_primer_p1>
		<pcr_primer_p2>TGTAATTGGGTGGTAATAGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGGTTTAGATGAAAGTACTGAAAATCAATTTCTAAATAAAATTACACTTTCAAAAACCCTTATTGCTTCTCTGCAACTTCAATTTTCGCTAGCATCTTAAAAACACCGGCCACATGAATTTTCCAACGAAGAATCCAGCCGCCATTCCGGATGGCCATTATCCCCATTTTTTGCCACCGAACCTTATAATTTTTATGACGTAGTGGCAAATTGGATATACACCCCCAAACTATTACCACCCAATTACA</canonical_amplicon>
		<polymorphic_amplicon>TTTGGTTTAGATGAAAGTACTGAAAATCAATTTCTAAATAAAATTACACTTTCAAAAACCCTTATTGCTTCTCTGCAACTTCAATTTTCGCTAGCWTCTTAAAAACACCGGCCACATGAATTTTCCAACGAAGAATCCAGCCGCCATTCCGGATGGCCATTATCCCCATTTTTTGCCACCGAACCTTATAATTTTTATGACGTAGTGGCAAATTGGATATACACCCCCAAACTATTACCACCCAATTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19689</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>207864</contig_pos>
        <strand>+</strand>
        <context>GATGGCCATT[A/T]TCCCCATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCACATGAATTTTCCAACGAAGAATCCAGCCGCCATTCCGGATGGCCATT</left_flank>
        <right_flank>TCCCCATTTTTTGCCACCGAACCTTATAATTTTTATGACGTAGTGGCAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCAAAAATTTTGCTAATGAAAATGTTTCAATGGGATTGTACTACTGTGAAACCTGTAACAGAAGGGCACCCACACTGACTAGTATGAGCTCAATTATCCCAATTTCTATTAGATATATCAAAAATGTGACAACTTCTAAAACGTTCATCATAATATCAGAAGTGTTTTATCAGTTGACCAATTTTTGACATTTTGCGCAGGAATAGATATAATTGAGTTCAAACTTGAGGACTCTTCTTTTACTTCGTGTTGTAGCTACTGTAATTTCTTACATTTTCAATATTTCTGTTTCAAAAATCTAATTTCAGTTAAAAATTATTTTTAATTCTAATCAGCTTTGGTTTAGATGAAAGTACTGAAAATCAATTTCTAAATAAAATTACACTTTCAAAAACCCTTATTGCTTCTCTGCAACTTCAATTTTCGCTAGCATCTTAAAAACACCGGCCACATGAATTTTCCAACGAAGAATCCAGCCGCCATTCCGGATGGCCATTATCCCCATTTTTTGCCACCGAACCTTATAATTTTTATGACGTAGTGGCAAATTGGATATACACCCCCAAACTATTACCACCCAATTACATAAAAACTTTCCCCTCGAACTTTTTTATATGTCTATTAAAAAGAGATATTAAACTTTCACTAAGAGATCATGAAAGTTTAATGGTTAGCTACTGTAAACTTAGAGCCAATATATCTTGCTTCTTGTCAAAGATACAAAAAAGTTGTCAACTAATAAAGTGTTTATTATAAAATCACAAACATTTTATCAGTTGACCCATTTTTGATATATTGCACAAGAACAGAGATATATGGGCTCAAAGTTGGAAGGTTAGAAAGTTGATGAGAAAATTCGAATTTAATAATATTTTAAATTTTTTCAGTCACAACAATTTGGGATTTCAATACGTCCTAGAAGCTCCAATTTCAACATCAGTACGTCGGGATGATGATCGAATGACATATGTGAATAAGGGACAGTTCTATACAGTATC</canonical>
            <polymorphic>GTTCAAAAATTTTGCTAATGAAAATGTTTCAATGGGATTGTACTACTGTGAAACCTGTAACAGAAGGGCACCCACACTGACTAGTATGAGCTCAATTATCCCAATTTCTATTAGATATATCAAAAATGTGACAACTTCTAAAACGTTCATCATAATATCAGAAGTGTTTTATCAGTTGACCAATTTTTGACATTTTGCGCAGGAATAGATATAATTGAGTTCAAACTTGAGGACTCTTCTTTTACTTCGTGTTGTAGCTACTGTAATTTCTTACATTTTCAATATTTCTGTTTCAAAAATCTAATTTCAGTTAAAAATTATTTTTAATTCTAATCAGCTTTGGTTTAGATGAAAGTACTGAAAATCAATTTCTAAATAAAATTACACTTTCAAAAACCCTTATTGCTTCTCTGCAACTTCAATTTTCGCTAGCATCTTAAAAACACCGGCCACATGAATTTTCCAACGAAGAATCCAGCCGCCATTCCGGATGGCCATTWTCCCCATTTTTTGCCACCGAACCTTATAATTTTTATGACGTAGTGGCAAATTGGATATACACCCCCAAACTATTACCACCCAATTACATAAAAACTTTCCCCTCGAACTTTTTTATATGTCTATTAAAAAGAGATATTAAACTTTCACTAAGAGATCATGAAAGTTTAATGGTTAGCTACTGTAAACTTAGAGCCAATATATCTTGCTTCTTGTCAAAGATACAAAAAAGTTGTCAACTAATAAAGTGTTTATTATAAAATCACAAACATTTTATCAGTTGACCCATTTTTGATATATTGCACAAGAACAGAGATATATGGGCTCAAAGTTGGAAGGTTAGAAAGTTGATGAGAAAATTCGAATTTAATAATATTTTAAATTTTTTCAGTCACAACAATTTGGGATTTCAATACGTCCTAGAAGCTCCAATTTCAACATCAGTACGTCGGGATGATGATCGAATGACATATGTGAATAAGGGACAGTTCTATACAGTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGGTTTAGATGAAAGTACTGAA</pcr_primer_p1>
		<pcr_primer_p2>TGTAATTGGGTGGTAATAGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGGTTTAGATGAAAGTACTGAAAATCAATTTCTAAATAAAATTACACTTTCAAAAACCCTTATTGCTTCTCTGCAACTTCAATTTTCGCTAGCATCTTAAAAACACCGGCCACATGAATTTTCCAACGAAGAATCCAGCCGCCATTCCGGATGGCCATTATCCCCATTTTTTGCCACCGAACCTTATAATTTTTATGACGTAGTGGCAAATTGGATATACACCCCCAAACTATTACCACCCAATTACA</canonical_amplicon>
		<polymorphic_amplicon>TTTGGTTTAGATGAAAGTACTGAAAATCAATTTCTAAATAAAATTACACTTTCAAAAACCCTTATTGCTTCTCTGCAACTTCAATTTTCGCTAGCATCTTAAAAACACCGGCCACATGAATTTTCCAACGAAGAATCCAGCCGCCATTCCGGATGGCCATTWTCCCCATTTTTTGCCACCGAACCTTATAATTTTTATGACGTAGTGGCAAATTGGATATACACCCCCAAACTATTACCACCCAATTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19690</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>209982</contig_pos>
        <strand>+</strand>
        <context>AGCGAAGGTT[A/G]CAAGGTAATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTAATCGAAAAATGTTGCACGAAAACCGGCGAGACGAGAAGCGAAGGTT</left_flank>
        <right_flank>CAAGGTAATCTATTTGATATCTAACCTTATATGTGAAAGTTTGCTCTACT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGGTGTAAAGGGTCTTCCGCTGCACGTACAAATCGATACTTATGACGGGGACAATGACAAAACCCCATTCCACAGGGGTTACTGTCAAATTAAGGTTTTCTGTGATAAAGTGAGTTTTTTTCCCGAAATTTTGAGATTTTCGAAAAAAAATTTCAAAAAGATAATTCTAAATTTTGCATAAAATTAGGGCGCTGAGCGAAAACTTCGCGACGAAGACAAACGAGCGGCGAAACGAAAAGTTCAAGGTACAGTAATCCTTCCTTCTCTATCTTTCTATATGTTCTCTTTTTATACACATTGTGTCGTATACTGTAGTTTCAGTCAATTTTCTAACAGAGTATCTCAAAAAGTCCGTGTTTGTTTTTCTTCGTCGTGTCGTTTTCTTGTCAGTGTCCTACCGTAATCCTTACCGTAATCTTCATGTGTCCACGTGTCTTTTTATAGGGAGCTAATCGAAAAATGTTGCACGAAAACCGGCGAGACGAGAAGCGAAGGTTGCAAGGTAATCTATTTGATATCTAACCTTATATGTGAAAGTTTGCTCTACTGGACTTAGTCCAGTGAAGCACACTTACTCCATGTTTCATGTAACTTACTTCATGTTTCATGTCCTAACGCTTTCTACCGTAATCCTTCAAGTCCATCTTTAAACATTTTCAGAAATTTCAGAGTTCCAATCAGCAGGAGCGTTATCAGGTGGCGGTCGAAAGAAATCCGATGGAGAATATCATGAGCAATGTGAACGAAGTGAATTCTATCATATGAGAGAGTTAGATAAGCCAGCTGCACTTTTCATTGCTCCTGAAGAATTCGATAATCGATATGTGGATAGTACGAGTCTGAGTTTTGATATGTCTGAAATCGAACCGATTGCAAAGAGGCCCAGGACTTCAGAGAGGAGTGAGTTTTATTATGGAATTGTATTAGAGCGTAATTGCTCATTAGTGTCAAGTTTAATGATTTTAGTTTGCGCAAATGCGCTCTAGTTATCGTTCAAT</canonical>
            <polymorphic>AAAGGTGTAAAGGGTCTTCCGCTGCACGTACAAATCGATACTTATGACGGGGACAATGACAAAACCCCATTCCACAGGGGTTACTGTCAAATTAAGGTTTTCTGTGATAAAGTGAGTTTTTTTCCCGAAATTTTGAGATTTTCGAAAAAAAATTTCAAAAAGATAATTCTAAATTTTGCATAAAATTAGGGCGCTGAGCGAAAACTTCGCGACGAAGACAAACGAGCGGCGAAACGAAAAGTTCAAGGTACAGTAATCCTTCCTTCTCTATCTTTCTATATGTTCTCTTTTTATACACATTGTGTCGTATACTGTAGTTTCAGTCAATTTTCTAACAGAGTATCTCAAAAAGTCCGTGTTTGTTTTTCTTCGTCGTGTCGTTTTCTTGTCAGTGTCCTACCGTAATCCTTACCGTAATCTTCATGTGTCCACGTGTCTTTTTATAGGGAGCTAATCGAAAAATGTTGCACGAAAACCGGCGAGACGAGAAGCGAAGGTTRCAAGGTAATCTATTTGATATCTAACCTTATATGTGAAAGTTTGCTCTACTGGACTTAGTCCAGTGAAGCACACTTACTCCATGTTTCATGTAACTTACTTCATGTTTCATGTCCTAACGCTTTCTACCGTAATCCTTCAAGTCCATCTTTAAACATTTTCAGAAATTTCAGAGTTCCAATCAGCAGGAGCGTTATCAGGTGGCGGTCGAAAGAAATCCGATGGAGAATATCATGAGCAATGTGAACGAAGTGAATTCTATCATATGAGAGAGTTAGATAAGCCAGCTGCACTTTTCATTGCTCCTGAAGAATTCGATAATCGATATGTGGATAGTACGAGTCTGAGTTTTGATATGTCTGAAATCGAACCGATTGCAAAGAGGCCCAGGACTTCAGAGAGGAGTGAGTTTTATTATGGAATTGTATTAGAGCGTAATTGCTCATTAGTGTCAAGTTTAATGATTTTAGTTTGCGCAAATGCGCTCTAGTTATCGTTCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>289 288 154 125 87 33 24</canonical_bands>
                <polymorphic_bands>321 289 154 125 87 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACCGTAATCTTCATGTGTCC</pcr_primer_p1>
		<pcr_primer_p2>AAAATGTTTAAAGATGGACTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACCGTAATCTTCATGTGTCCACGTGTCTTTTTATAGGGAGCTAATCGAAAAATGTTGCACGAAAACCGGCGAGACGAGAAGCGAAGGTTGCAAGGTAATCTATTTGATATCTAACCTTATATGTGAAAGTTTGCTCTACTGGACTTAGTCCAGTGAAGCACACTTACTCCATGTTTCATGTAACTTACTTCATGTTTCATGTCCTAACGCTTTCTACCGTAATCCTTCAAGTCCATCTTTAAACATTTT</canonical_amplicon>
		<polymorphic_amplicon>TACCGTAATCTTCATGTGTCCACGTGTCTTTTTATAGGGAGCTAATCGAAAAATGTTGCACGAAAACCGGCGAGACGAGAAGCGAAGGTTRCAAGGTAATCTATTTGATATCTAACCTTATATGTGAAAGTTTGCTCTACTGGACTTAGTCCAGTGAAGCACACTTACTCCATGTTTCATGTAACTTACTTCATGTTTCATGTCCTAACGCTTTCTACCGTAATCCTTCAAGTCCATCTTTAAACATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19691</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>209846</contig_pos>
        <strand>+</strand>
        <context>CCGTGTTTGT[C/T]TTTCTTCGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTAGTTTCAGTCAATTTTCTAACAGAGTATCTCAAAAAGTCCGTGTTTGT</left_flank>
        <right_flank>TTTCTTCGTCGTGTCGTTTTCTTGTCAGTGTCCTACCGTAATCCTTACCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGCGGACGGAGCTGAAGAGACGCCGACAACGAGACGTTCTAACTTTCTGCACCCTCTTCTTTCCCCACAATATTTCCCCCAATTTTTCAGATTTCCATTGCCGTCCAATGTCTCTCCACAGATTTTTCAACACAAAAAGGTGTAAAGGGTCTTCCGCTGCACGTACAAATCGATACTTATGACGGGGACAATGACAAAACCCCATTCCACAGGGGTTACTGTCAAATTAAGGTTTTCTGTGATAAAGTGAGTTTTTTTCCCGAAATTTTGAGATTTTCGAAAAAAAATTTCAAAAAGATAATTCTAAATTTTGCATAAAATTAGGGCGCTGAGCGAAAACTTCGCGACGAAGACAAACGAGCGGCGAAACGAAAAGTTCAAGGTACAGTAATCCTTCCTTCTCTATCTTTCTATATGTTCTCTTTTTATACACATTGTGTCGTATACTGTAGTTTCAGTCAATTTTCTAACAGAGTATCTCAAAAAGTCCGTGTTTGTTTTTCTTCGTCGTGTCGTTTTCTTGTCAGTGTCCTACCGTAATCCTTACCGTAATCTTCATGTGTCCACGTGTCTTTTTATAGGGAGCTAATCGAAAAATGTTGCACGAAAACCGGCGAGACGAGAAGCGAAGGTTGCAAGGTAATCTATTTGATATCTAACCTTATATGTGAAAGTTTGCTCTACTGGACTTAGTCCAGTGAAGCACACTTACTCCATGTTTCATGTAACTTACTTCATGTTTCATGTCCTAACGCTTTCTACCGTAATCCTTCAAGTCCATCTTTAAACATTTTCAGAAATTTCAGAGTTCCAATCAGCAGGAGCGTTATCAGGTGGCGGTCGAAAGAAATCCGATGGAGAATATCATGAGCAATGTGAACGAAGTGAATTCTATCATATGAGAGAGTTAGATAAGCCAGCTGCACTTTTCATTGCTCCTGAAGAATTCGATAATCGATATGTGGATAGTACGAGTCTGAGTTTTGATATGTCTGAAAT</canonical>
            <polymorphic>ACGCGGACGGAGCTGAAGAGACGCCGACAACGAGACGTTCTAACTTTCTGCACCCTCTTCTTTCCCCACAATATTTCCCCCAATTTTTCAGATTTCCATTGCCGTCCAATGTCTCTCCACAGATTTTTCAACACAAAAAGGTGTAAAGGGTCTTCCGCTGCACGTACAAATCGATACTTATGACGGGGACAATGACAAAACCCCATTCCACAGGGGTTACTGTCAAATTAAGGTTTTCTGTGATAAAGTGAGTTTTTTTCCCGAAATTTTGAGATTTTCGAAAAAAAATTTCAAAAAGATAATTCTAAATTTTGCATAAAATTAGGGCGCTGAGCGAAAACTTCGCGACGAAGACAAACGAGCGGCGAAACGAAAAGTTCAAGGTACAGTAATCCTTCCTTCTCTATCTTTCTATATGTTCTCTTTTTATACACATTGTGTCGTATACTGTAGTTTCAGTCAATTTTCTAACAGAGTATCTCAAAAAGTCCGTGTTTGTYTTTCTTCGTCGTGTCGTTTTCTTGTCAGTGTCCTACCGTAATCCTTACCGTAATCTTCATGTGTCCACGTGTCTTTTTATAGGGAGCTAATCGAAAAATGTTGCACGAAAACCGGCGAGACGAGAAGCGAAGGTTGCAAGGTAATCTATTTGATATCTAACCTTATATGTGAAAGTTTGCTCTACTGGACTTAGTCCAGTGAAGCACACTTACTCCATGTTTCATGTAACTTACTTCATGTTTCATGTCCTAACGCTTTCTACCGTAATCCTTCAAGTCCATCTTTAAACATTTTCAGAAATTTCAGAGTTCCAATCAGCAGGAGCGTTATCAGGTGGCGGTCGAAAGAAATCCGATGGAGAATATCATGAGCAATGTGAACGAAGTGAATTCTATCATATGAGAGAGTTAGATAAGCCAGCTGCACTTTTCATTGCTCCTGAAGAATTCGATAATCGATATGTGGATAGTACGAGTCTGAGTTTTGATATGTCTGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTATACTGTAGTTTCAGTCAATTTT</pcr_primer_p1>
		<pcr_primer_p2>TAAGTCCAGTAGAGCAAACTTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGTATACTGTAGTTTCAGTCAATTTTCTAACAGAGTATCTCAAAAAGTCCGTGTTTGTTTTTCTTCGTCGTGTCGTTTTCTTGTCAGTGTCCTACCGTAATCCTTACCGTAATCTTCATGTGTCCACGTGTCTTTTTATAGGGAGCTAATCGAAAAATGTTGCACGAAAACCGGCGAGACGAGAAGCGAAGGTTGCAAGGTAATCTATTTGATATCTAACCTTATATGTGAAAGTTTGCTCTACTGGACTTA</canonical_amplicon>
		<polymorphic_amplicon>CGTATACTGTAGTTTCAGTCAATTTTCTAACAGAGTATCTCAAAAAGTCCGTGTTTGTYTTTCTTCGTCGTGTCGTTTTCTTGTCAGTGTCCTACCGTAATCCTTACCGTAATCTTCATGTGTCCACGTGTCTTTTTATAGGGAGCTAATCGAAAAATGTTGCACGAAAACCGGCGAGACGAGAAGCGAAGGTTGCAAGGTAATCTATTTGATATCTAACCTTATATGTGAAAGTTTGCTCTACTGGACTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19692</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>209782</contig_pos>
        <strand>+</strand>
        <context>YTTATACACA[C/T]TGTGTCGTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAGTAATCCTTCCTTCTCTATCTTTCTATATGTTCTCTTTTTATACACA</left_flank>
        <right_flank>TGTGTCGTATACTGTAGTTTCAGTCAATTTTCTAACAGAGTATCTCAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCAAGTTAAAATCCCTAGCTGTCTGTGTCTCTTGCCCCGTCCACACTCTCTGACGCTATCTAACGCGGACGGAGCTGAAGAGACGCCGACAACGAGACGTTCTAACTTTCTGCACCCTCTTCTTTCCCCACAATATTTCCCCCAATTTTTCAGATTTCCATTGCCGTCCAATGTCTCTCCACAGATTTTTCAACACAAAAAGGTGTAAAGGGTCTTCCGCTGCACGTACAAATCGATACTTATGACGGGGACAATGACAAAACCCCATTCCACAGGGGTTACTGTCAAATTAAGGTTTTCTGTGATAAAGTGAGTTTTTTTCCCGAAATTTTGAGATTTTCGAAAAAAAATTTCAAAAAGATAATTCTAAATTTTGCATAAAATTAGGGCGCTGAGCGAAAACTTCGCGACGAAGACAAACGAGCGGCGAAACGAAAAGTTCAAGGTACAGTAATCCTTCCTTCTCTATCTTTCTATATGTTCTCTTTTTATACACATTGTGTCGTATACTGTAGTTTCAGTCAATTTTCTAACAGAGTATCTCAAAAAGTCCGTGTTTGTTTTTCTTCGTCGTGTCGTTTTCTTGTCAGTGTCCTACCGTAATCCTTACCGTAATCTTCATGTGTCCACGTGTCTTTTTATAGGGAGCTAATCGAAAAATGTTGCACGAAAACCGGCGAGACGAGAAGCGAAGGTTGCAAGGTAATCTATTTGATATCTAACCTTATATGTGAAAGTTTGCTCTACTGGACTTAGTCCAGTGAAGCACACTTACTCCATGTTTCATGTAACTTACTTCATGTTTCATGTCCTAACGCTTTCTACCGTAATCCTTCAAGTCCATCTTTAAACATTTTCAGAAATTTCAGAGTTCCAATCAGCAGGAGCGTTATCAGGTGGCGGTCGAAAGAAATCCGATGGAGAATATCATGAGCAATGTGAACGAAGTGAATTCTATCATATGAGAGAGTTAGATAAGCCAGCTGCACTTTTCATTG</canonical>
            <polymorphic>AATCAAGTTAAAATCCCTAGCTGTCTGTGTCTCTTGCCCCGTCCACACTCTCTGACGCTATCTAACGCGGACGGAGCTGAAGAGACGCCGACAACGAGACGTTCTAACTTTCTGCACCCTCTTCTTTCCCCACAATATTTCCCCCAATTTTTCAGATTTCCATTGCCGTCCAATGTCTCTCCACAGATTTTTCAACACAAAAAGGTGTAAAGGGTCTTCCGCTGCACGTACAAATCGATACTTATGACGGGGACAATGACAAAACCCCATTCCACAGGGGTTACTGTCAAATTAAGGTTTTCTGTGATAAAGTGAGTTTTTTTCCCGAAATTTTGAGATTTTCGAAAAAAAATTTCAAAAAGATAATTCTAAATTTTGCATAAAATTAGGGCGCTGAGCGAAAACTTCGCGACGAAGACAAACGAGCGGCGAAACGAAAAGTTCAAGGTACAGTAATCCTTCCTTCTCTATCTTTCTATATGTTCTCTTTTTATACACAYTGTGTCGTATACTGTAGTTTCAGTCAATTTTCTAACAGAGTATCTCAAAAAGTCCGTGTTTGTTTTTCTTCGTCGTGTCGTTTTCTTGTCAGTGTCCTACCGTAATCCTTACCGTAATCTTCATGTGTCCACGTGTCTTTTTATAGGGAGCTAATCGAAAAATGTTGCACGAAAACCGGCGAGACGAGAAGCGAAGGTTGCAAGGTAATCTATTTGATATCTAACCTTATATGTGAAAGTTTGCTCTACTGGACTTAGTCCAGTGAAGCACACTTACTCCATGTTTCATGTAACTTACTTCATGTTTCATGTCCTAACGCTTTCTACCGTAATCCTTCAAGTCCATCTTTAAACATTTTCAGAAATTTCAGAGTTCCAATCAGCAGGAGCGTTATCAGGTGGCGGTCGAAAGAAATCCGATGGAGAATATCATGAGCAATGTGAACGAAGTGAATTCTATCATATGAGAGAGTTAGATAAGCCAGCTGCACTTTTCATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGAAAAGTTCAAGGTACAGTAA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCGATTAGCTCCCTATAA</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>ACGAAAAGTTCAAGGTACAGTAATCCTTCCTTCTCTATCTTTCTATATGTTCTCTTTTTATACACATTGTGTCGTATACTGTAGTTTCAGTCAATTTTCTAACAGAGTATCTCAAAAAGTCCGTGTTTGTTTTTCTTCGTCGTGTCGTTTTCTTGTCAGTGTCCTACCGTAATCCTTACCGTAATCTTCATGTGTCCACGTGTCTTTTTATAGGGAGCTAATCGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>ACGAAAAGTTCAAGGTACAGTAATCCTTCCTTCTCTATCTTTCTATATGTTCTCTTTTTATACACAYTGTGTCGTATACTGTAGTTTCAGTCAATTTTCTAACAGAGTATCTCAAAAAGTCCGTGTTTGTTTTTCTTCGTCGTGTCGTTTTCTTGTCAGTGTCCTACCGTAATCCTTACCGTAATCTTCATGTGTCCACGTGTCTTTTTATAGGGAGCTAATCGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19693</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>209772</contig_pos>
        <strand>+</strand>
        <context>ATGTTCTCTT[C/T]TTATACACAY</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTTCAAGGTACAGTAATCCTTCCTTCTCTATCTTTCTATATGTTCTCTT</left_flank>
        <right_flank>TTATACACATTGTGTCGTATACTGTAGTTTCAGTCAATTTTCTAACAGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCCTCAAAAAATCAAGTTAAAATCCCTAGCTGTCTGTGTCTCTTGCCCCGTCCACACTCTCTGACGCTATCTAACGCGGACGGAGCTGAAGAGACGCCGACAACGAGACGTTCTAACTTTCTGCACCCTCTTCTTTCCCCACAATATTTCCCCCAATTTTTCAGATTTCCATTGCCGTCCAATGTCTCTCCACAGATTTTTCAACACAAAAAGGTGTAAAGGGTCTTCCGCTGCACGTACAAATCGATACTTATGACGGGGACAATGACAAAACCCCATTCCACAGGGGTTACTGTCAAATTAAGGTTTTCTGTGATAAAGTGAGTTTTTTTCCCGAAATTTTGAGATTTTCGAAAAAAAATTTCAAAAAGATAATTCTAAATTTTGCATAAAATTAGGGCGCTGAGCGAAAACTTCGCGACGAAGACAAACGAGCGGCGAAACGAAAAGTTCAAGGTACAGTAATCCTTCCTTCTCTATCTTTCTATATGTTCTCTTTTTATACACATTGTGTCGTATACTGTAGTTTCAGTCAATTTTCTAACAGAGTATCTCAAAAAGTCCGTGTTTGTTTTTCTTCGTCGTGTCGTTTTCTTGTCAGTGTCCTACCGTAATCCTTACCGTAATCTTCATGTGTCCACGTGTCTTTTTATAGGGAGCTAATCGAAAAATGTTGCACGAAAACCGGCGAGACGAGAAGCGAAGGTTGCAAGGTAATCTATTTGATATCTAACCTTATATGTGAAAGTTTGCTCTACTGGACTTAGTCCAGTGAAGCACACTTACTCCATGTTTCATGTAACTTACTTCATGTTTCATGTCCTAACGCTTTCTACCGTAATCCTTCAAGTCCATCTTTAAACATTTTCAGAAATTTCAGAGTTCCAATCAGCAGGAGCGTTATCAGGTGGCGGTCGAAAGAAATCCGATGGAGAATATCATGAGCAATGTGAACGAAGTGAATTCTATCATATGAGAGAGTTAGATAAGCCAGCTGCA</canonical>
            <polymorphic>ACCCTCAAAAAATCAAGTTAAAATCCCTAGCTGTCTGTGTCTCTTGCCCCGTCCACACTCTCTGACGCTATCTAACGCGGACGGAGCTGAAGAGACGCCGACAACGAGACGTTCTAACTTTCTGCACCCTCTTCTTTCCCCACAATATTTCCCCCAATTTTTCAGATTTCCATTGCCGTCCAATGTCTCTCCACAGATTTTTCAACACAAAAAGGTGTAAAGGGTCTTCCGCTGCACGTACAAATCGATACTTATGACGGGGACAATGACAAAACCCCATTCCACAGGGGTTACTGTCAAATTAAGGTTTTCTGTGATAAAGTGAGTTTTTTTCCCGAAATTTTGAGATTTTCGAAAAAAAATTTCAAAAAGATAATTCTAAATTTTGCATAAAATTAGGGCGCTGAGCGAAAACTTCGCGACGAAGACAAACGAGCGGCGAAACGAAAAGTTCAAGGTACAGTAATCCTTCCTTCTCTATCTTTCTATATGTTCTCTTYTTATACACATTGTGTCGTATACTGTAGTTTCAGTCAATTTTCTAACAGAGTATCTCAAAAAGTCCGTGTTTGTTTTTCTTCGTCGTGTCGTTTTCTTGTCAGTGTCCTACCGTAATCCTTACCGTAATCTTCATGTGTCCACGTGTCTTTTTATAGGGAGCTAATCGAAAAATGTTGCACGAAAACCGGCGAGACGAGAAGCGAAGGTTGCAAGGTAATCTATTTGATATCTAACCTTATATGTGAAAGTTTGCTCTACTGGACTTAGTCCAGTGAAGCACACTTACTCCATGTTTCATGTAACTTACTTCATGTTTCATGTCCTAACGCTTTCTACCGTAATCCTTCAAGTCCATCTTTAAACATTTTCAGAAATTTCAGAGTTCCAATCAGCAGGAGCGTTATCAGGTGGCGGTCGAAAGAAATCCGATGGAGAATATCATGAGCAATGTGAACGAAGTGAATTCTATCATATGAGAGAGTTAGATAAGCCAGCTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGAAAAGTTCAAGGTACAGTAA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCGATTAGCTCCCTATAA</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>ACGAAAAGTTCAAGGTACAGTAATCCTTCCTTCTCTATCTTTCTATATGTTCTCTTTTTATACACATTGTGTCGTATACTGTAGTTTCAGTCAATTTTCTAACAGAGTATCTCAAAAAGTCCGTGTTTGTTTTTCTTCGTCGTGTCGTTTTCTTGTCAGTGTCCTACCGTAATCCTTACCGTAATCTTCATGTGTCCACGTGTCTTTTTATAGGGAGCTAATCGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>ACGAAAAGTTCAAGGTACAGTAATCCTTCCTTCTCTATCTTTCTATATGTTCTCTTYTTATACACATTGTGTCGTATACTGTAGTTTCAGTCAATTTTCTAACAGAGTATCTCAAAAAGTCCGTGTTTGTTTTTCTTCGTCGTGTCGTTTTCTTGTCAGTGTCCTACCGTAATCCTTACCGTAATCTTCATGTGTCCACGTGTCTTTTTATAGGGAGCTAATCGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19694</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>209663</contig_pos>
        <strand></strand>
        <context>AAATTTTGCA[T/A]AAASTTAGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTTGAGATTTTCGAAAAAAAATTTCAAAAAGATAATTCTAAATTTTGCA</left_flank>
        <right_flank>AAAATTAGGGCGCTGAGCGAAAACTTCGCGACGAAGACAAACGAGCGGCG</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGCATAATTTGAACTTTTGAGATCGAGAAAATTGGGTTTCATCTTTTTTTTTAAGTAGCTGAAATTTTTAATTTTTGTGCTGAAAATACAAAAGAAACATTGAGAAAACCCTCAAAAAATCAAGTTAAAATCCCTAGCTGTCTGTGTCTCTTGCCCCGTCCACACTCTCTGACGCTATCTAACGCGGACGGAGCTGAAGAGACGCCGACAACGAGACGTTCTAACTTTCTGCACCCTCTTCTTTCCCCACAATATTTCCCCCAATTTTTCAGATTTCCATTGCCGTCCAATGTCTCTCCACAGATTTTTCAACACAAAAAGGTGTAAAGGGTCTTCCGCTGCACGTACAAATCGATACTTATGACGGGGACAATGACAAAACCCCATTCCACAGGGGTTACTGTCAAATTAAGGTTTTCTGTGATAAAGTGAGTTTTTTTCCCGAAATTTTGAGATTTTCGAAAAAAAATTTCAAAAAGATAATTCTAAATTTTGCATAAAATTAGGGCGCTGAGCGAAAACTTCGCGACGAAGACAAACGAGCGGCGAAACGAAAAGTTCAAGGTACAGTAATCCTTCCTTCTCTATCTTTCTATATGTTCTCTTTTTATACACATTGTGTCGTATACTGTAGTTTCAGTCAATTTTCTAACAGAGTATCTCAAAAAGTCCGTGTTTGTTTTTCTTCGTCGTGTCGTTTTCTTGTCAGTGTCCTACCGTAATCCTTACCGTAATCTTCATGTGTCCACGTGTCTTTTTATAGGGAGCTAATCGAAAAATGTTGCACGAAAACCGGCGAGACGAGAAGCGAAGGTTGCAAGGTAATCTATTTGATATCTAACCTTATATGTGAAAGTTTGCTCTACTGGACTTAGTCCAGTGAAGCACACTTACTCCATGTTTCATGTAACTTACTTCATGTTTCATGTCCTAACGCTTTCTACCGTAATCCTTCAAGTCCATCTTTAAACATTTTCAGAAATTTCAGAGTTCCAATC</canonical>
            <polymorphic>TTTGCATAATTTGAACTTTTGAGATCGAGAAAATTGGGTTTCATCTTTTTTTTTAAGTAGCTGAAATTTTTAATTTTTGTGCTGAAAATACAAAAGAAACATTGAGAAAACCCTCAAAAAATCAAGTTAAAATCCCTAGCTGTCTGTGTCTCTTGCCCCGTCCACACTCTCTGACGCTATCTAACGCGGACGGAGCTGAAGAGACGCCGACAACGAGACGTTCTAACTTTCTGCACCCTCTTCTTTCCCCACAATATTTCCCCCAATTTTTCAGATTTCCATTGCCGTCCAATGTCTCTCCACAGATTTTTCAACACAAAAAGGTGTAAAGGGTCTTCCGCTGCACGTACAAATCGATACTTATGACGGGGACAATGACAAAACCCCATTCCACAGGGGTTACTGTCAAATTAAGGTTTTCTGTGATAAAGTGAGTTTTTTTCCCGAAATTTTGAGATTTTCGAAAAAAAATTTCAAAAAGATAATTCTAAATTTTGCAWAAAATTAGGGCGCTGAGCGAAAACTTCGCGACGAAGACAAACGAGCGGCGAAACGAAAAGTTCAAGGTACAGTAATCCTTCCTTCTCTATCTTTCTATATGTTCTCTTTTTATACACATTGTGTCGTATACTGTAGTTTCAGTCAATTTTCTAACAGAGTATCTCAAAAAGTCCGTGTTTGTTTTTCTTCGTCGTGTCGTTTTCTTGTCAGTGTCCTACCGTAATCCTTACCGTAATCTTCATGTGTCCACGTGTCTTTTTATAGGGAGCTAATCGAAAAATGTTGCACGAAAACCGGCGAGACGAGAAGCGAAGGTTGCAAGGTAATCTATTTGATATCTAACCTTATATGTGAAAGTTTGCTCTACTGGACTTAGTCCAGTGAAGCACACTTACTCCATGTTTCATGTAACTTACTTCATGTTTCATGTCCTAACGCTTTCTACCGTAATCCTTCAAGTCCATCTTTAAACATTTTCAGAAATTTCAGAGTTCCAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACGTACAAATCGATACTTATGAC</pcr_primer_p1>
		<pcr_primer_p2>AGAGAAGGAAGGATTACTGTACC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACGTACAAATCGATACTTATGACGGGGACAATGACAAAACCCCATTCCACAGGGGTTACTGTCAAATTAAGGTTTTCTGTGATAAAGTGAGTTTTTTTCCCGAAATTTTGAGATTTTCGAAAAAAAATTTCAAAAAGATAATTCTAAATTTTGCATAAAATTAGGGCGCTGAGCGAAAACTTCGCGACGAAGACAAACGAGCGGCGAAACGAAAAGTTCAAGGTACAGTAATCCTTCCTTCTCT</canonical_amplicon>
		<polymorphic_amplicon>CACGTACAAATCGATACTTATGACGGGGACAATGACAAAACCCCATTCCACAGGGGTTACTGTCAAATTAAGGTTTTCTGTGATAAAGTGAGTTTTTTTCCCGAAATTTTGAGATTTTCGAAAAAAAATTTCAAAAAGATAATTCTAAATTTTGCAWAAAATTAGGGCGCTGAGCGAAAACTTCGCGACGAAGACAAACGAGCGGCGAAACGAAAAGTTCAAGGTACAGTAATCCTTCCTTCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19696</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>259514</contig_pos>
        <strand>+</strand>
        <context>TAGAGAATAC[A/G]AATCCGGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAAATGGAAATCTAGAAGTATAGAAAAATTAGAAATTTTTAGAGAATAC</left_flank>
        <right_flank>AATCCGGAAATTTAGAAATTTCGGGAACTAAAAATCTAGGAATCGTCGGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGCTAGAGAGAGCGATGACCAAAGAAAGAACTGGCGGGGAAGGAAAATGCACACAATAAGAAAGGAAATGAGGAGGTGGTGGTGAGCTCCCCTTGATTTCTTGTGCCTTTTCTTGTGCTTTGTCGAAAAGGAAAAAGGACGAAATTGTGGTAATAAAACGAAATGGACACTCCTTCCCTTCGTTTCCACTTTTTTAGAACAACAAGATTGGTTGGGGTTTTGGAAAATGAAAGTGAAGAGGACTCTTCGAGGAGCTGGGAGGAGCAAAGGAGAGGGAACAAATAGGCTCCGCCCATTTGAAGATGTAGGGAAAAAATTATAAGAAAGAATCTGAAAATCGAAGGATTGAAATAAGGAAATTCGGAATTCCAAAATATAGAAGTCTAGTTTTTCTATGAAAAAATTGAAAAATCTAGAATAAAAATATTTTTTTGGAATCTGGAAATCTGGAAATGGAAATCTAGAAGTATAGAAAAATTAGAAATTTTTAGAGAATACAAATCCGGAAATTTAGAAATTTCGGGAACTAAAAATCTAGGAATCGTCGGTGGTGGCCGTAGCCGAAGGTCCCACAACGATAACTACAGTAACCTAGAATTTCGAATTTTCTGTTATTTTTTCCCCAAAAAAGGCGAAAAATTAGTAATAAAACAGACGGAAACTGAACGAAAATCAAGAAAAGGAATCGATTTTTTCTTCGATTTTTCGCAAAAGTTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATTTTGATTAAAATTTCAGAATATGTCAAGGATATCCTATCTAGACATCCCTGAAAATTTTAGAACACGCTCGTCAATTTCAGCAGCGTTATATCAGTCCAAAGTTTTAGTACTGAAATCCGTTGATTTGCATGCTTTACCACACATTTCATCCCCGAAATCCCTTTAAAAGGAGTTTGAAGAGGGCCTGACATTTAAGCGCCTTTTGAACCAATAGTAAATGTCGACGGCGTGGTGTCGGGGATGTGGT</canonical>
            <polymorphic>GCGCTAGAGAGAGCGATGACCAAAGAAAGAACTGGCGGGGAAGGAAAATGCACACAATAAGAAAGGAAATGAGGAGGTGGTGGTGAGCTCCCCTTGATTTCTTGTGCCTTTTCTTGTGCTTTGTCGAAAAGGAAAAAGGACGAAATTGTGGTAATAAAACGAAATGGACACTCCTTCCCTTCGTTTCCACTTTTTTAGAACAACAAGATTGGTTGGGGTTTTGGAAAATGAAAGTGAAGAGGACTCTTCGAGGAGCTGGGAGGAGCAAAGGAGAGGGAACAAATAGGCTCCGCCCATTTGAAGATGTAGGGAAAAAATTATAAGAAAGAATCTGAAAATCGAAGGATTGAAATAAGGAAATTCGGAATTCCAAAATATAGAAGTCTAGTTTTTCTATGAAAAAATTGAAAAATCTAGAATAAAAATATTTTTTTGGAATCTGGAAATCTGGAAATGGAAATCTAGAAGTATAGAAAAATTAGAAATTTTTAGAGAATACRAATCCGGAAATTTAGAAATTTCGGGAACTAAAAATCTAGGAATCGTCGGTGGTGGCCGTAGCCGAAGGTCCCACAACGATAACTACAGTAACCTAGAATTTCGAATTTTCTGTTATTTTTTCCCCAAAAAAGGCGAAAAATTAGTAATAAAACAGACGGAAACTGAACGAAAATCAAGAAAAGGAATCGATTTTTTCTTCGATTTTTCGCAAAAGTTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATTTTGATTAAAATTTCAGAATATGTCAAGGATATCCTATCTAGACATCCCTGAAAATTTTAGAACACGCTCGTCAATTTCAGCAGCGTTATATCAGTCCAAAGTTTTAGTACTGAAATCCGTTGATTTGCATGCTTTACCACACATTTCATCCCCGAAATCCCTTTAAAAGGAGTTTGAAGAGGGCCTGACATTTAAGCGCCTTTTGAACCAATAGTAAATGTCGACGGCGTGGTGTCGGGGATGTGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTGGAAATGGAAATCTAGAAG</pcr_primer_p1>
		<pcr_primer_p2>AAAATCCAAACTGACGAGGT</pcr_primer_p2>
		<pcr_amplicon_size>310</pcr_amplicon_size>
		<canonical_amplicon>ATCTGGAAATGGAAATCTAGAAGTATAGAAAAATTAGAAATTTTTAGAGAATACAAATCCGGAAATTTAGAAATTTCGGGAACTAAAAATCTAGGAATCGTCGGTGGTGGCCGTAGCCGAAGGTCCCACAACGATAACTACAGTAACCTAGAATTTCGAATTTTCTGTTATTTTTTCCCCAAAAAAGGCGAAAAATTAGTAATAAAACAGACGGAAACTGAACGAAAATCAAGAAAAGGAATCGATTTTTTCTTCGATTTTTCGCAAAAGTTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATTTT</canonical_amplicon>
		<polymorphic_amplicon>ATCTGGAAATGGAAATCTAGAAGTATAGAAAAATTAGAAATTTTTAGAGAATACRAATCCGGAAATTTAGAAATTTCGGGAACTAAAAATCTAGGAATCGTCGGTGGTGGCCGTAGCCGAAGGTCCCACAACGATAACTACAGTAACCTAGAATTTCGAATTTTCTGTTATTTTTTCCCCAAAAAAGGCGAAAAATTAGTAATAAAACAGACGGAAACTGAACGAAAATCAAGAAAAGGAATCGATTTTTTCTTCGATTTTTCGCAAAAGTTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19697</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>259497</contig_pos>
        <strand>+</strand>
        <context>GAAAAATTAG[A/G]AATTTTTAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGGAATCTGGAAATCTGGAAATGGAAATCTAGAAGTATAGAAAAATTAG</left_flank>
        <right_flank>AATTTTTAGAGAATACAAATCCGGAAATTTAGAAATTTCGGGAACTAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTAGTCGTATAGAAAGCGCTAGAGAGAGCGATGACCAAAGAAAGAACTGGCGGGGAAGGAAAATGCACACAATAAGAAAGGAAATGAGGAGGTGGTGGTGAGCTCCCCTTGATTTCTTGTGCCTTTTCTTGTGCTTTGTCGAAAAGGAAAAAGGACGAAATTGTGGTAATAAAACGAAATGGACACTCCTTCCCTTCGTTTCCACTTTTTTAGAACAACAAGATTGGTTGGGGTTTTGGAAAATGAAAGTGAAGAGGACTCTTCGAGGAGCTGGGAGGAGCAAAGGAGAGGGAACAAATAGGCTCCGCCCATTTGAAGATGTAGGGAAAAAATTATAAGAAAGAATCTGAAAATCGAAGGATTGAAATAAGGAAATTCGGAATTCCAAAATATAGAAGTCTAGTTTTTCTATGAAAAAATTGAAAAATCTAGAATAAAAATATTTTTTTGGAATCTGGAAATCTGGAAATGGAAATCTAGAAGTATAGAAAAATTAGAAATTTTTAGAGAATACAAATCCGGAAATTTAGAAATTTCGGGAACTAAAAATCTAGGAATCGTCGGTGGTGGCCGTAGCCGAAGGTCCCACAACGATAACTACAGTAACCTAGAATTTCGAATTTTCTGTTATTTTTTCCCCAAAAAAGGCGAAAAATTAGTAATAAAACAGACGGAAACTGAACGAAAATCAAGAAAAGGAATCGATTTTTTCTTCGATTTTTCGCAAAAGTTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATTTTGATTAAAATTTCAGAATATGTCAAGGATATCCTATCTAGACATCCCTGAAAATTTTAGAACACGCTCGTCAATTTCAGCAGCGTTATATCAGTCCAAAGTTTTAGTACTGAAATCCGTTGATTTGCATGCTTTACCACACATTTCATCCCCGAAATCCCTTTAAAAGGAGTTTGAAGAGGGCCTGACATTTAAGCGCCTTTTGAACCAATAGTAAATGTCGACGGCGT</canonical>
            <polymorphic>CTGTAGTCGTATAGAAAGCGCTAGAGAGAGCGATGACCAAAGAAAGAACTGGCGGGGAAGGAAAATGCACACAATAAGAAAGGAAATGAGGAGGTGGTGGTGAGCTCCCCTTGATTTCTTGTGCCTTTTCTTGTGCTTTGTCGAAAAGGAAAAAGGACGAAATTGTGGTAATAAAACGAAATGGACACTCCTTCCCTTCGTTTCCACTTTTTTAGAACAACAAGATTGGTTGGGGTTTTGGAAAATGAAAGTGAAGAGGACTCTTCGAGGAGCTGGGAGGAGCAAAGGAGAGGGAACAAATAGGCTCCGCCCATTTGAAGATGTAGGGAAAAAATTATAAGAAAGAATCTGAAAATCGAAGGATTGAAATAAGGAAATTCGGAATTCCAAAATATAGAAGTCTAGTTTTTCTATGAAAAAATTGAAAAATCTAGAATAAAAATATTTTTTTGGAATCTGGAAATCTGGAAATGGAAATCTAGAAGTATAGAAAAATTAGRAATTTTTAGAGAATACAAATCCGGAAATTTAGAAATTTCGGGAACTAAAAATCTAGGAATCGTCGGTGGTGGCCGTAGCCGAAGGTCCCACAACGATAACTACAGTAACCTAGAATTTCGAATTTTCTGTTATTTTTTCCCCAAAAAAGGCGAAAAATTAGTAATAAAACAGACGGAAACTGAACGAAAATCAAGAAAAGGAATCGATTTTTTCTTCGATTTTTCGCAAAAGTTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATTTTGATTAAAATTTCAGAATATGTCAAGGATATCCTATCTAGACATCCCTGAAAATTTTAGAACACGCTCGTCAATTTCAGCAGCGTTATATCAGTCCAAAGTTTTAGTACTGAAATCCGTTGATTTGCATGCTTTACCACACATTTCATCCCCGAAATCCCTTTAAAAGGAGTTTGAAGAGGGCCTGACATTTAAGCGCCTTTTGAACCAATAGTAAATGTCGACGGCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>375 178 158 118 80 44 25 8 7 7</canonical_bands>
                <polymorphic_bands>375 178 158 143 80 44 8 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTTGAAGATGTAGGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACGATTCCTAGATTTTTAGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CATTTGAAGATGTAGGGAAAAAATTATAAGAAAGAATCTGAAAATCGAAGGATTGAAATAAGGAAATTCGGAATTCCAAAATATAGAAGTCTAGTTTTTCTATGAAAAAATTGAAAAATCTAGAATAAAAATATTTTTTTGGAATCTGGAAATCTGGAAATGGAAATCTAGAAGTATAGAAAAATTAGAAATTTTTAGAGAATACAAATCCGGAAATTTAGAAATTTCGGGAACTAAAAATCTAGGAATCGT</canonical_amplicon>
		<polymorphic_amplicon>CATTTGAAGATGTAGGGAAAAAATTATAAGAAAGAATCTGAAAATCGAAGGATTGAAATAAGGAAATTCGGAATTCCAAAATATAGAAGTCTAGTTTTTCTATGAAAAAATTGAAAAATCTAGAATAAAAATATTTTTTTGGAATCTGGAAATCTGGAAATGGAAATCTAGAAGTATAGAAAAATTAGRAATTTTTAGAGAATACAAATCCGGAAATTTAGAAATTTCGGGAACTAAAAATCTAGGAATCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19698</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>259484</contig_pos>
        <strand>+</strand>
        <context>ATCTAGAAGT[A/T]TAGAAAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAAAATATTTTTTTGGAATCTGGAAATCTGGAAATGGAAATCTAGAAGT</left_flank>
        <right_flank>TAGAAAAATTAGAAATTTTTAGAGAATACAAATCCGGAAATTTAGAAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTATGAAGACTACTGTAGTCGTATAGAAAGCGCTAGAGAGAGCGATGACCAAAGAAAGAACTGGCGGGGAAGGAAAATGCACACAATAAGAAAGGAAATGAGGAGGTGGTGGTGAGCTCCCCTTGATTTCTTGTGCCTTTTCTTGTGCTTTGTCGAAAAGGAAAAAGGACGAAATTGTGGTAATAAAACGAAATGGACACTCCTTCCCTTCGTTTCCACTTTTTTAGAACAACAAGATTGGTTGGGGTTTTGGAAAATGAAAGTGAAGAGGACTCTTCGAGGAGCTGGGAGGAGCAAAGGAGAGGGAACAAATAGGCTCCGCCCATTTGAAGATGTAGGGAAAAAATTATAAGAAAGAATCTGAAAATCGAAGGATTGAAATAAGGAAATTCGGAATTCCAAAATATAGAAGTCTAGTTTTTCTATGAAAAAATTGAAAAATCTAGAATAAAAATATTTTTTTGGAATCTGGAAATCTGGAAATGGAAATCTAGAAGTATAGAAAAATTAGAAATTTTTAGAGAATACAAATCCGGAAATTTAGAAATTTCGGGAACTAAAAATCTAGGAATCGTCGGTGGTGGCCGTAGCCGAAGGTCCCACAACGATAACTACAGTAACCTAGAATTTCGAATTTTCTGTTATTTTTTCCCCAAAAAAGGCGAAAAATTAGTAATAAAACAGACGGAAACTGAACGAAAATCAAGAAAAGGAATCGATTTTTTCTTCGATTTTTCGCAAAAGTTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATTTTGATTAAAATTTCAGAATATGTCAAGGATATCCTATCTAGACATCCCTGAAAATTTTAGAACACGCTCGTCAATTTCAGCAGCGTTATATCAGTCCAAAGTTTTAGTACTGAAATCCGTTGATTTGCATGCTTTACCACACATTTCATCCCCGAAATCCCTTTAAAAGGAGTTTGAAGAGGGCCTGACATTTAAGCGCCTTTTGAACCAATAGTAA</canonical>
            <polymorphic>GCTATGAAGACTACTGTAGTCGTATAGAAAGCGCTAGAGAGAGCGATGACCAAAGAAAGAACTGGCGGGGAAGGAAAATGCACACAATAAGAAAGGAAATGAGGAGGTGGTGGTGAGCTCCCCTTGATTTCTTGTGCCTTTTCTTGTGCTTTGTCGAAAAGGAAAAAGGACGAAATTGTGGTAATAAAACGAAATGGACACTCCTTCCCTTCGTTTCCACTTTTTTAGAACAACAAGATTGGTTGGGGTTTTGGAAAATGAAAGTGAAGAGGACTCTTCGAGGAGCTGGGAGGAGCAAAGGAGAGGGAACAAATAGGCTCCGCCCATTTGAAGATGTAGGGAAAAAATTATAAGAAAGAATCTGAAAATCGAAGGATTGAAATAAGGAAATTCGGAATTCCAAAATATAGAAGTCTAGTTTTTCTATGAAAAAATTGAAAAATCTAGAATAAAAATATTTTTTTGGAATCTGGAAATCTGGAAATGGAAATCTAGAAGTWTAGAAAAATTAGAAATTTTTAGAGAATACAAATCCGGAAATTTAGAAATTTCGGGAACTAAAAATCTAGGAATCGTCGGTGGTGGCCGTAGCCGAAGGTCCCACAACGATAACTACAGTAACCTAGAATTTCGAATTTTCTGTTATTTTTTCCCCAAAAAAGGCGAAAAATTAGTAATAAAACAGACGGAAACTGAACGAAAATCAAGAAAAGGAATCGATTTTTTCTTCGATTTTTCGCAAAAGTTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATTTTGATTAAAATTTCAGAATATGTCAAGGATATCCTATCTAGACATCCCTGAAAATTTTAGAACACGCTCGTCAATTTCAGCAGCGTTATATCAGTCCAAAGTTTTAGTACTGAAATCCGTTGATTTGCATGCTTTACCACACATTTCATCCCCGAAATCCCTTTAAAAGGAGTTTGAAGAGGGCCTGACATTTAAGCGCCTTTTGAACCAATAGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTGAAGATGTAGGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACGATTCCTAGATTTTTAGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CATTTGAAGATGTAGGGAAAAAATTATAAGAAAGAATCTGAAAATCGAAGGATTGAAATAAGGAAATTCGGAATTCCAAAATATAGAAGTCTAGTTTTTCTATGAAAAAATTGAAAAATCTAGAATAAAAATATTTTTTTGGAATCTGGAAATCTGGAAATGGAAATCTAGAAGTATAGAAAAATTAGAAATTTTTAGAGAATACAAATCCGGAAATTTAGAAATTTCGGGAACTAAAAATCTAGGAATCGT</canonical_amplicon>
		<polymorphic_amplicon>CATTTGAAGATGTAGGGAAAAAATTATAAGAAAGAATCTGAAAATCGAAGGATTGAAATAAGGAAATTCGGAATTCCAAAATATAGAAGTCTAGTTTTTCTATGAAAAAATTGAAAAATCTAGAATAAAAATATTTTTTTGGAATCTGGAAATCTGGAAATGGAAATCTAGAAGTWTAGAAAAATTAGAAATTTTTAGAGAATACAAATCCGGAAATTTAGAAATTTCGGGAACTAAAAATCTAGGAATCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19699</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>259385</contig_pos>
        <strand>+</strand>
        <context>TTMGGAATTC[A/C]AAAATATAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAAGAAAGAATCTGAAAATCGAAGGATTGAAATAAGGAAATTCGGAATTC</left_flank>
        <right_flank>AAAATATAGAAGTCTAGTTTTTCTATGAAAAAATTGAAAAATCTAGAATA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACAAAACTACTGTAGTCGAAGCAAAAACGGGCTCTTCAAAACATGGAAGCACATTAGGCTACGGTAGCTGTGCGCTGATTCCTAGATTCCCAGAATCGCTATGAAGACTACTGTAGTCGTATAGAAAGCGCTAGAGAGAGCGATGACCAAAGAAAGAACTGGCGGGGAAGGAAAATGCACACAATAAGAAAGGAAATGAGGAGGTGGTGGTGAGCTCCCCTTGATTTCTTGTGCCTTTTCTTGTGCTTTGTCGAAAAGGAAAAAGGACGAAATTGTGGTAATAAAACGAAATGGACACTCCTTCCCTTCGTTTCCACTTTTTTAGAACAACAAGATTGGTTGGGGTTTTGGAAAATGAAAGTGAAGAGGACTCTTCGAGGAGCTGGGAGGAGCAAAGGAGAGGGAACAAATAGGCTCCGCCCATTTGAAGATGTAGGGAAAAAATTATAAGAAAGAATCTGAAAATCGAAGGATTGAAATAAGGAAATTCGGAATTCCAAAATATAGAAGTCTAGTTTTTCTATGAAAAAATTGAAAAATCTAGAATAAAAATATTTTTTTGGAATCTGGAAATCTGGAAATGGAAATCTAGAAGTATAGAAAAATTAGAAATTTTTAGAGAATACAAATCCGGAAATTTAGAAATTTCGGGAACTAAAAATCTAGGAATCGTCGGTGGTGGCCGTAGCCGAAGGTCCCACAACGATAACTACAGTAACCTAGAATTTCGAATTTTCTGTTATTTTTTCCCCAAAAAAGGCGAAAAATTAGTAATAAAACAGACGGAAACTGAACGAAAATCAAGAAAAGGAATCGATTTTTTCTTCGATTTTTCGCAAAAGTTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATTTTGATTAAAATTTCAGAATATGTCAAGGATATCCTATCTAGACATCCCTGAAAATTTTAGAACACGCTCGTCAATTTCAGCAGCGTTATATCAGTCCAAAGTTTTAGTACTGAAATCC</canonical>
            <polymorphic>AGACAAAACTACTGTAGTCGAAGCAAAAACGGGCTCTTCAAAACATGGAAGCACATTAGGCTACGGTAGCTGTGCGCTGATTCCTAGATTCCCAGAATCGCTATGAAGACTACTGTAGTCGTATAGAAAGCGCTAGAGAGAGCGATGACCAAAGAAAGAACTGGCGGGGAAGGAAAATGCACACAATAAGAAAGGAAATGAGGAGGTGGTGGTGAGCTCCCCTTGATTTCTTGTGCCTTTTCTTGTGCTTTGTCGAAAAGGAAAAAGGACGAAATTGTGGTAATAAAACGAAATGGACACTCCTTCCCTTCGTTTCCACTTTTTTAGAACAACAAGATTGGTTGGGGTTTTGGAAAATGAAAGTGAAGAGGACTCTTCGAGGAGCTGGGAGGAGCAAAGGAGAGGGAACAAATAGGCTCCGCCCATTTGAAGATGTAGGGAAAAAATTATAAGAAAGAATCTGAAAATCGAAGGATTGAAATAAGGAAATTCGGAATTCMAAAATATAGAAGTCTAGTTTTTCTATGAAAAAATTGAAAAATCTAGAATAAAAATATTTTTTTGGAATCTGGAAATCTGGAAATGGAAATCTAGAAGTATAGAAAAATTAGAAATTTTTAGAGAATACAAATCCGGAAATTTAGAAATTTCGGGAACTAAAAATCTAGGAATCGTCGGTGGTGGCCGTAGCCGAAGGTCCCACAACGATAACTACAGTAACCTAGAATTTCGAATTTTCTGTTATTTTTTCCCCAAAAAAGGCGAAAAATTAGTAATAAAACAGACGGAAACTGAACGAAAATCAAGAAAAGGAATCGATTTTTTCTTCGATTTTTCGCAAAAGTTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATTTTGATTAAAATTTCAGAATATGTCAAGGATATCCTATCTAGACATCCCTGAAAATTTTAGAACACGCTCGTCAATTTCAGCAGCGTTATATCAGTCCAAAGTTTTAGTACTGAAATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTGAAGATGTAGGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACGATTCCTAGATTTTTAGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CATTTGAAGATGTAGGGAAAAAATTATAAGAAAGAATCTGAAAATCGAAGGATTGAAATAAGGAAATTCGGAATTCCAAAATATAGAAGTCTAGTTTTTCTATGAAAAAATTGAAAAATCTAGAATAAAAATATTTTTTTGGAATCTGGAAATCTGGAAATGGAAATCTAGAAGTATAGAAAAATTAGAAATTTTTAGAGAATACAAATCCGGAAATTTAGAAATTTCGGGAACTAAAAATCTAGGAATCGT</canonical_amplicon>
		<polymorphic_amplicon>CATTTGAAGATGTAGGGAAAAAATTATAAGAAAGAATCTGAAAATCGAAGGATTGAAATAAGGAAATTCGGAATTCMAAAATATAGAAGTCTAGTTTTTCTATGAAAAAATTGAAAAATCTAGAATAAAAATATTTTTTTGGAATCTGGAAATCTGGAAATGGAAATCTAGAAGTATAGAAAAATTAGAAATTTTTAGAGAATACAAATCCGGAAATTTAGAAATTTCGGGAACTAAAAATCTAGGAATCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19700</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>259377</contig_pos>
        <strand>+</strand>
        <context>TAAGGAAATT[A/C]GGAATTCMAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAAATTATAAGAAAGAATCTGAAAATCGAAGGATTGAAATAAGGAAATT</left_flank>
        <right_flank>GGAATTCCAAAATATAGAAGTCTAGTTTTTCTATGAAAAAATTGAAAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGCACAAGACAAAACTACTGTAGTCGAAGCAAAAACGGGCTCTTCAAAACATGGAAGCACATTAGGCTACGGTAGCTGTGCGCTGATTCCTAGATTCCCAGAATCGCTATGAAGACTACTGTAGTCGTATAGAAAGCGCTAGAGAGAGCGATGACCAAAGAAAGAACTGGCGGGGAAGGAAAATGCACACAATAAGAAAGGAAATGAGGAGGTGGTGGTGAGCTCCCCTTGATTTCTTGTGCCTTTTCTTGTGCTTTGTCGAAAAGGAAAAAGGACGAAATTGTGGTAATAAAACGAAATGGACACTCCTTCCCTTCGTTTCCACTTTTTTAGAACAACAAGATTGGTTGGGGTTTTGGAAAATGAAAGTGAAGAGGACTCTTCGAGGAGCTGGGAGGAGCAAAGGAGAGGGAACAAATAGGCTCCGCCCATTTGAAGATGTAGGGAAAAAATTATAAGAAAGAATCTGAAAATCGAAGGATTGAAATAAGGAAATTCGGAATTCCAAAATATAGAAGTCTAGTTTTTCTATGAAAAAATTGAAAAATCTAGAATAAAAATATTTTTTTGGAATCTGGAAATCTGGAAATGGAAATCTAGAAGTATAGAAAAATTAGAAATTTTTAGAGAATACAAATCCGGAAATTTAGAAATTTCGGGAACTAAAAATCTAGGAATCGTCGGTGGTGGCCGTAGCCGAAGGTCCCACAACGATAACTACAGTAACCTAGAATTTCGAATTTTCTGTTATTTTTTCCCCAAAAAAGGCGAAAAATTAGTAATAAAACAGACGGAAACTGAACGAAAATCAAGAAAAGGAATCGATTTTTTCTTCGATTTTTCGCAAAAGTTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATTTTGATTAAAATTTCAGAATATGTCAAGGATATCCTATCTAGACATCCCTGAAAATTTTAGAACACGCTCGTCAATTTCAGCAGCGTTATATCAGTCCAAAGTTTTAGTAC</canonical>
            <polymorphic>AGAGCACAAGACAAAACTACTGTAGTCGAAGCAAAAACGGGCTCTTCAAAACATGGAAGCACATTAGGCTACGGTAGCTGTGCGCTGATTCCTAGATTCCCAGAATCGCTATGAAGACTACTGTAGTCGTATAGAAAGCGCTAGAGAGAGCGATGACCAAAGAAAGAACTGGCGGGGAAGGAAAATGCACACAATAAGAAAGGAAATGAGGAGGTGGTGGTGAGCTCCCCTTGATTTCTTGTGCCTTTTCTTGTGCTTTGTCGAAAAGGAAAAAGGACGAAATTGTGGTAATAAAACGAAATGGACACTCCTTCCCTTCGTTTCCACTTTTTTAGAACAACAAGATTGGTTGGGGTTTTGGAAAATGAAAGTGAAGAGGACTCTTCGAGGAGCTGGGAGGAGCAAAGGAGAGGGAACAAATAGGCTCCGCCCATTTGAAGATGTAGGGAAAAAATTATAAGAAAGAATCTGAAAATCGAAGGATTGAAATAAGGAAATTMGGAATTCCAAAATATAGAAGTCTAGTTTTTCTATGAAAAAATTGAAAAATCTAGAATAAAAATATTTTTTTGGAATCTGGAAATCTGGAAATGGAAATCTAGAAGTATAGAAAAATTAGAAATTTTTAGAGAATACAAATCCGGAAATTTAGAAATTTCGGGAACTAAAAATCTAGGAATCGTCGGTGGTGGCCGTAGCCGAAGGTCCCACAACGATAACTACAGTAACCTAGAATTTCGAATTTTCTGTTATTTTTTCCCCAAAAAAGGCGAAAAATTAGTAATAAAACAGACGGAAACTGAACGAAAATCAAGAAAAGGAATCGATTTTTTCTTCGATTTTTCGCAAAAGTTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATTTTGATTAAAATTTCAGAATATGTCAAGGATATCCTATCTAGACATCCCTGAAAATTTTAGAACACGCTCGTCAATTTCAGCAGCGTTATATCAGTCCAAAGTTTTAGTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>495 158 118 80 58 44 25 8 7 7</canonical_bands>
                <polymorphic_bands>502 158 118 80 58 44 25 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>470 404 95 31</canonical_bands>
                <polymorphic_bands>470 435 95</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTTGAAGATGTAGGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACGATTCCTAGATTTTTAGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CATTTGAAGATGTAGGGAAAAAATTATAAGAAAGAATCTGAAAATCGAAGGATTGAAATAAGGAAATTCGGAATTCCAAAATATAGAAGTCTAGTTTTTCTATGAAAAAATTGAAAAATCTAGAATAAAAATATTTTTTTGGAATCTGGAAATCTGGAAATGGAAATCTAGAAGTATAGAAAAATTAGAAATTTTTAGAGAATACAAATCCGGAAATTTAGAAATTTCGGGAACTAAAAATCTAGGAATCGT</canonical_amplicon>
		<polymorphic_amplicon>CATTTGAAGATGTAGGGAAAAAATTATAAGAAAGAATCTGAAAATCGAAGGATTGAAATAAGGAAATTMGGAATTCCAAAATATAGAAGTCTAGTTTTTCTATGAAAAAATTGAAAAATCTAGAATAAAAATATTTTTTTGGAATCTGGAAATCTGGAAATGGAAATCTAGAAGTATAGAAAAATTAGAAATTTTTAGAGAATACAAATCCGGAAATTTAGAAATTTCGGGAACTAAAAATCTAGGAATCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19701</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>259354</contig_pos>
        <strand>+</strand>
        <context>ATCTGAAAAT[C/T]GAAGGATTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGCCCATTTGAAGATGTAGGGAAAAAATTATAAGAAAGAATCTGAAAAT</left_flank>
        <right_flank>GAAGGATTGAAATAAGGAAATTCGGAATTCCAAAATATAGAAGTCTAGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTGAGATAGGTTACGGTAGCTAGAGCACAAGACAAAACTACTGTAGTCGAAGCAAAAACGGGCTCTTCAAAACATGGAAGCACATTAGGCTACGGTAGCTGTGCGCTGATTCCTAGATTCCCAGAATCGCTATGAAGACTACTGTAGTCGTATAGAAAGCGCTAGAGAGAGCGATGACCAAAGAAAGAACTGGCGGGGAAGGAAAATGCACACAATAAGAAAGGAAATGAGGAGGTGGTGGTGAGCTCCCCTTGATTTCTTGTGCCTTTTCTTGTGCTTTGTCGAAAAGGAAAAAGGACGAAATTGTGGTAATAAAACGAAATGGACACTCCTTCCCTTCGTTTCCACTTTTTTAGAACAACAAGATTGGTTGGGGTTTTGGAAAATGAAAGTGAAGAGGACTCTTCGAGGAGCTGGGAGGAGCAAAGGAGAGGGAACAAATAGGCTCCGCCCATTTGAAGATGTAGGGAAAAAATTATAAGAAAGAATCTGAAAATCGAAGGATTGAAATAAGGAAATTCGGAATTCCAAAATATAGAAGTCTAGTTTTTCTATGAAAAAATTGAAAAATCTAGAATAAAAATATTTTTTTGGAATCTGGAAATCTGGAAATGGAAATCTAGAAGTATAGAAAAATTAGAAATTTTTAGAGAATACAAATCCGGAAATTTAGAAATTTCGGGAACTAAAAATCTAGGAATCGTCGGTGGTGGCCGTAGCCGAAGGTCCCACAACGATAACTACAGTAACCTAGAATTTCGAATTTTCTGTTATTTTTTCCCCAAAAAAGGCGAAAAATTAGTAATAAAACAGACGGAAACTGAACGAAAATCAAGAAAAGGAATCGATTTTTTCTTCGATTTTTCGCAAAAGTTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATTTTGATTAAAATTTCAGAATATGTCAAGGATATCCTATCTAGACATCCCTGAAAATTTTAGAACACGCTCGTCAATTTCAGCAGCGTT</canonical>
            <polymorphic>TCTTGAGATAGGTTACGGTAGCTAGAGCACAAGACAAAACTACTGTAGTCGAAGCAAAAACGGGCTCTTCAAAACATGGAAGCACATTAGGCTACGGTAGCTGTGCGCTGATTCCTAGATTCCCAGAATCGCTATGAAGACTACTGTAGTCGTATAGAAAGCGCTAGAGAGAGCGATGACCAAAGAAAGAACTGGCGGGGAAGGAAAATGCACACAATAAGAAAGGAAATGAGGAGGTGGTGGTGAGCTCCCCTTGATTTCTTGTGCCTTTTCTTGTGCTTTGTCGAAAAGGAAAAAGGACGAAATTGTGGTAATAAAACGAAATGGACACTCCTTCCCTTCGTTTCCACTTTTTTAGAACAACAAGATTGGTTGGGGTTTTGGAAAATGAAAGTGAAGAGGACTCTTCGAGGAGCTGGGAGGAGCAAAGGAGAGGGAACAAATAGGCTCCGCCCATTTGAAGATGTAGGGAAAAAATTATAAGAAAGAATCTGAAAATYGAAGGATTGAAATAAGGAAATTCGGAATTCCAAAATATAGAAGTCTAGTTTTTCTATGAAAAAATTGAAAAATCTAGAATAAAAATATTTTTTTGGAATCTGGAAATCTGGAAATGGAAATCTAGAAGTATAGAAAAATTAGAAATTTTTAGAGAATACAAATCCGGAAATTTAGAAATTTCGGGAACTAAAAATCTAGGAATCGTCGGTGGTGGCCGTAGCCGAAGGTCCCACAACGATAACTACAGTAACCTAGAATTTCGAATTTTCTGTTATTTTTTCCCCAAAAAAGGCGAAAAATTAGTAATAAAACAGACGGAAACTGAACGAAAATCAAGAAAAGGAATCGATTTTTTCTTCGATTTTTCGCAAAAGTTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATTTTGATTAAAATTTCAGAATATGTCAAGGATATCCTATCTAGACATCCCTGAAAATTTTAGAACACGCTCGTCAATTTCAGCAGCGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>262 235 140 124 91 86 50 12</canonical_bands>
                <polymorphic_bands>353 235 140 124 86 50 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATGAAAGTGAAGAGGACT</pcr_primer_p1>
		<pcr_primer_p2>CTTCTAGATTTCCATTTCCAGAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAAAATGAAAGTGAAGAGGACTCTTCGAGGAGCTGGGAGGAGCAAAGGAGAGGGAACAAATAGGCTCCGCCCATTTGAAGATGTAGGGAAAAAATTATAAGAAAGAATCTGAAAATCGAAGGATTGAAATAAGGAAATTCGGAATTCCAAAATATAGAAGTCTAGTTTTTCTATGAAAAAATTGAAAAATCTAGAATAAAAATATTTTTTTGGAATCTGGAAATCTGGAAATGGAAATCTAGAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATGAAAGTGAAGAGGACTCTTCGAGGAGCTGGGAGGAGCAAAGGAGAGGGAACAAATAGGCTCCGCCCATTTGAAGATGTAGGGAAAAAATTATAAGAAAGAATCTGAAAATYGAAGGATTGAAATAAGGAAATTCGGAATTCCAAAATATAGAAGTCTAGTTTTTCTATGAAAAAATTGAAAAATCTAGAATAAAAATATTTTTTTGGAATCTGGAAATCTGGAAATGGAAATCTAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19703</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>293847</contig_pos>
        <strand></strand>
        <context>GSTTTTTTTT[G/C]CTCCAGAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TACAGCGACCTAGAAAGTTCTCGAAAAACTTAGTACTTCCGTTTTTTTTT</left_flank>
        <right_flank>CTCCAGAATTTCACGAATTCTTGCTCTTTTTTCCAAAAGAAGTGCTTCCT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCACCCTCACAAGTTCAACTCCTTGAGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCACCTTTAAGAAAAATCACAAACTTTGGATCAAAAGTTTTTTTTTAAATTTTCCAGTTTTTTAATTTTTTTTTCGCCTTCCTCGAAAATCAAGTTCATTCAATAATTTCGAAACAGTAAATTTTTTCCAAAATGTTTTTCCAGAATGGAATTTTTCATGACAGAAAATGACTCATTTCATTTATTCCGGCGTCACCGAATTCCGTTGTTTTTGATTTTTATATGGTTCTTTTTTCCCGAATTTCCATTCTTTTATTACAGCGACCTAGAAAGTTCTCGAAAAACTTAGTACTTCCGTTTTTTTTTGCTCCAGAATTTCACGAATTCTTGCTCTTTTTTCCAAAAGAAGTGCTTCCTGTCCATAAAGAAGGTCCGTTTTGTTGTCCATAGTTACCAAAACTAAAGGGAGGGAGGCTAAGAAATCGGAAGCACTTATTTCTATCCTTTTTGTGTTCTTTTTCCCGATTTCTCTGCGTCTCTAATGACTTCTCCAATCAGAAATACATATACATTGTATTTTCATAGGAAAAGTTTTCAAGGTATAAGATGATAGGCAACACACACACACACTGACGAACAGAAAAATCACTCCTCAAACTTATGCCAAAGCCCTCTCTTTTTCGTAAAGTTTCTGTAATATCTAAAAATGAAGCGTTTGTAGGAAAATCATTACTGCTAGTAACTTCTCCGAGTTTAAAATTGTTTGCTGAAACTGTAAAAAAAATTCTGCAACATATTATCTCCCTTACAGTGAATTTNNNNNNNNNNCGATTATTTTGAATAGACAATACTGAGTCTGCAAACACG</canonical>
            <polymorphic>GTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCACCCTCACAAGTTCAACTCCTTGAGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCACCTTTAAGAAAAATCACAAACTTTGGATCAAAAGTTTTTTTTTAAATTTTCCAGTTTTTTAATTTTTTTTTCGCCTTCCTCGAAAATCAAGTTCATTCAATAATTTCGAAACAGTAAATTTTTTCCAAAATGTTTTTCCAGAATGGAATTTTTCATGACAGAAAATGACTCATTTCATTTATTCCGGCGTCACCGAATTCCGTTGTTTTTGATTTTTATATGGTTCTTTTTTCCCGAATTTCCATTCTTTTATTACAGCGACCTAGAAAGTTCTCGAAAAACTTAGTACTTCCGTTTTTTTTTSCTCCAGAATTTCACGAATTCTTGCTCTTTTTTCCAAAAGAAGTGCTTCCTGTCCATAAAGAAGGTCCGTTTTGTTGTCCATAGTTACCAAAACTAAAGGGAGGGAGGCTAAGAAATCGGAAGCACTTATTTCTATCCTTTTTGTGTTCTTTTTCCCGATTTCTCTGCGTCTCTAATGACTTCTCCAATCAGAAATACATATACATTGTATTTTCATAGGAAAAGTTTTCAAGGTATAAGATGATAGGCAACACACACACACACTGACGAACAGAAAAATCACTCCTCAAACTTATGCCAAAGCCCTCTCTTTTTCGTAAAGTTTCTGTAATATCTAAAAATGAAGCGTTTGTAGGAAAATCATTACTGCTAGTAACTTCTCCGAGTTTAAAATTGTTTGCTGAAACTGTAAAAAAAATTCTGCAACATATTATCTCCCTTACAGTGAATTTNNNNNNNNNNCGATTATTTTGAATAGACAATACTGAGTCTGCAAACACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGTTGTTTTTGATTTTTATATG</pcr_primer_p1>
		<pcr_primer_p2>ACAAAAAGGATAGAAATAAGTGCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCGTTGTTTTTGATTTTTATATGGTTCTTTTTTCCCGAATTTCCATTCTTTTATTACAGCGACCTAGAAAGTTCTCGAAAAACTTAGTACTTCCGTTTTTTTTTGCTCCAGAATTTCACGAATTCTTGCTCTTTTTTCCAAAAGAAGTGCTTCCTGTCCATAAAGAAGGTCCGTTTTGTTGTCCATAGTTACCAAAACTAAAGGGAGGGAGGCTAAGAAATCGGAAGCACTTATTTCTATCCTTTTTGT</canonical_amplicon>
		<polymorphic_amplicon>CCGTTGTTTTTGATTTTTATATGGTTCTTTTTTCCCGAATTTCCATTCTTTTATTACAGCGACCTAGAAAGTTCTCGAAAAACTTAGTACTTCCGTTTTTTTTTSCTCCAGAATTTCACGAATTCTTGCTCTTTTTTCCAAAAGAAGTGCTTCCTGTCCATAAAGAAGGTCCGTTTTGTTGTCCATAGTTACCAAAACTAAAGGGAGGGAGGCTAAGAAATCGGAAGCACTTATTTCTATCCTTTTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19704</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>294021</contig_pos>
        <strand>+</strand>
        <context>CTGCGTCTCT[A/C]ATGACTTCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACTTATTTCTATCCTTTTTGTGTTCTTTTTCCCGATTTCTCTGCGTCTCT</left_flank>
        <right_flank>ATGACTTCTCCAATCAGAAATACATATACATTGTATTTTCATAGGAAAAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATTTTTTTCATGTCCCCCACCTTTAAGAAAAATCACAAACTTTGGATCAAAAGTTTTTTTTTAAATTTTCCAGTTTTTTAATTTTTTTTTCGCCTTCCTCGAAAATCAAGTTCATTCAATAATTTCGAAACAGTAAATTTTTTCCAAAATGTTTTTCCAGAATGGAATTTTTCATGACAGAAAATGACTCATTTCATTTATTCCGGCGTCACCGAATTCCGTTGTTTTTGATTTTTATATGGTTCTTTTTTCCCGAATTTCCATTCTTTTATTACAGCGACCTAGAAAGTTCTCGAAAAACTTAGTACTTCCGTTTTTTTTTGCTCCAGAATTTCACGAATTCTTGCTCTTTTTTCCAAAAGAAGTGCTTCCTGTCCATAAAGAAGGTCCGTTTTGTTGTCCATAGTTACCAAAACTAAAGGGAGGGAGGCTAAGAAATCGGAAGCACTTATTTCTATCCTTTTTGTGTTCTTTTTCCCGATTTCTCTGCGTCTCTAATGACTTCTCCAATCAGAAATACATATACATTGTATTTTCATAGGAAAAGTTTTCAAGGTATAAGATGATAGGCAACACACACACACACTGACGAACAGAAAAATCACTCCTCAAACTTATGCCAAAGCCCTCTCTTTTTCGTAAAGTTTCTGTAATATCTAAAAATGAAGCGTTTGTAGGAAAATCATTACTGCTAGTAACTTCTCCGAGTTTAAAATTGTTTGCTGAAACTGTAAAAAAAATTCTGCAACATATTATCTCCCTTACAGTGAATTTNNNNNNNNNNCGATTATTTTGAATAGACAATACTGAGTCTGCAAACACGGGGTGTCATTTTTTAAATTTAACAATATGGTGTAATTTTCAAAATCTGTTCATTGTATTTCTGGAATTCTACATACTTTTTTTCTAAATGAAAACTTAAAAAAACAATGAAACTGCTGGAAACTTTGCAAAATGACCATTTTCTAGAATCAATTGAAAAGAGAATATATTTAAA</canonical>
            <polymorphic>ATTATTTTTTTCATGTCCCCCACCTTTAAGAAAAATCACAAACTTTGGATCAAAAGTTTTTTTTTAAATTTTCCAGTTTTTTAATTTTTTTTTCGCCTTCCTCGAAAATCAAGTTCATTCAATAATTTCGAAACAGTAAATTTTTTCCAAAATGTTTTTCCAGAATGGAATTTTTCATGACAGAAAATGACTCATTTCATTTATTCCGGCGTCACCGAATTCCGTTGTTTTTGATTTTTATATGGTTCTTTTTTCCCGAATTTCCATTCTTTTATTACAGCGACCTAGAAAGTTCTCGAAAAACTTAGTACTTCCGTTTTTTTTTGCTCCAGAATTTCACGAATTCTTGCTCTTTTTTCCAAAAGAAGTGCTTCCTGTCCATAAAGAAGGTCCGTTTTGTTGTCCATAGTTACCAAAACTAAAGGGAGGGAGGCTAAGAAATCGGAAGCACTTATTTCTATCCTTTTTGTGTTCTTTTTCCCGATTTCTCTGCGTCTCTMATGACTTCTCCAATCAGAAATACATATACATTGTATTTTCATAGGAAAAGTTTTCAAGGTATAAGATGATAGGCAACACACACACACACTGACGAACAGAAAAATCACTCCTCAAACTTATGCCAAAGCCCTCTCTTTTTCGTAAAGTTTCTGTAATATCTAAAAATGAAGCGTTTGTAGGAAAATCATTACTGCTAGTAACTTCTCCGAGTTTAAAATTGTTTGCTGAAACTGTAAAAAAAATTCTGCAACATATTATCTCCCTTACAGTGAATTTNNNNNNNNNNCGATTATTTTGAATAGACAATACTGAGTCTGCAAACACGGGGTGTCATTTTTTAAATTTAACAATATGGTGTAATTTTCAAAATCTGTTCATTGTATTTCTGGAATTCTACATACTTTTTTTCTAAATGAAAACTTAAAAAAACAATGAAACTGCTGGAAACTTTGCAAAATGACCATTTTCTAGAATCAATTGAAAAGAGAATATATTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCACTTATTTCTATCCTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>GCAGTAATGATTTTCCTACAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGCACTTATTTCTATCCTTTTTGTGTTCTTTTTCCCGATTTCTCTGCGTCTCTAATGACTTCTCCAATCAGAAATACATATACATTGTATTTTCATAGGAAAAGTTTTCAAGGTATAAGATGATAGGCAACACACACACACACTGACGAACAGAAAAATCACTCCTCAAACTTATGCCAAAGCCCTCTCTTTTTCGTAAAGTTTCTGTAATATCTAAAAATGAAGCGTTTGTAGGAAAATCATTACTGC</canonical_amplicon>
		<polymorphic_amplicon>AAGCACTTATTTCTATCCTTTTTGTGTTCTTTTTCCCGATTTCTCTGCGTCTCTMATGACTTCTCCAATCAGAAATACATATACATTGTATTTTCATAGGAAAAGTTTTCAAGGTATAAGATGATAGGCAACACACACACACACTGACGAACAGAAAAATCACTCCTCAAACTTATGCCAAAGCCCTCTCTTTTTCGTAAAGTTTCTGTAATATCTAAAAATGAAGCGTTTGTAGGAAAATCATTACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19705</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>296785</contig_pos>
        <strand></strand>
        <context>TGTTTGACTA[C/A]AGGGTTTAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTTTTTTCGAAAAAAAAAACGTTTCCCGCCTCTTTTACATGTTTGACTA</left_flank>
        <right_flank>AGGGTTTAACCTAGTTTTCTTAGTGGTCTTCTTGTCATACCACTACTTTT</right_flank>
        <qual_score>35</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTTAAAAAATAATTTTTATCAAATAATCGATTCTCTCAGAATAATCAGATCCAATTTGAAAACATTCAAAAACTTTTAGTATCAGGTTGTTAGAGCAACCTCTCTTTACTAAAGCCACCTTGTAGTCACTTTTTCTCTAATCCTCTCCACCTCCAACACTCTCTCCATCTATCCAGTTTTGCTCCGTCCGATCAGGGCGTCTAAACCAACTCAACTTGGACTAAGTCAACAAAAATACAGACTTTTCTGTCTCTTTTCTTTTCTCCGCATACCATCTCCATTCACATTTTTCCTCTCGACGGGGGCTCTTTTTCTTTTACTGTCTGCATTTCTCTCTATTTCTTTTTTGTCTTCAAAGTTTTTCTTGTTTCATTTTTTGTGTCTTCTTCTTCTTCTTCTTCTTCATTTTCGCACCTGTCTCAATTTTTGACAGTTTTCTCCGTCAACTTTTTTTTCGAAAAAAAAAACGTTTCCCGCCTCTTTTACATGTTTGACTACAGGGTTTAACCTAGTTTTCTTAGTGGTCTTCTTGTCATACCACTACTTTTTTTTTGGAAAAAATACTGTTTCAAAATTTTCATTTTTGAACATTTTACAGATTTTTTTCAATGTTGTTCTTATAACTTCTAGAAATTAATTGAAACTATTCTGAGGACAACACCAAAAAACGTTTTTTTTCATTATTTTCTAAAAAATGTTTCGGTAATAAAACCGGGTACAAAAACTCCTCAAAAATGTTTCAATACATTTTTTTGTTTACTTTCAAAAAATGAGTCAGACCTCCTCTCTAAAAAAGTAAACCTATAACCTCCATACAGTTGAAACCAATGCCACTTTTTTGTTCTGATTTGTAGCAAAGCTTTTTTTTTATTCTCAATAGGTTTAAAAAAAATTATGACCACTGTATTAGCAATCAAGAAGTTACAGCTAATTTTTTTTTCAATTCGGTGAACATGCGAAATTCCTCTGTTGATTAATTTCCTCGACTTCTTTGGAAC</canonical>
            <polymorphic>CCTTTAAAAAATAATTTTTATCAAATAATCGATTCTCTCAGAATAATCAGATCCAATTTGAAAACATTCAAAAACTTTTAGTATCAGGTTGTTAGAGCAACCTCTCTTTACTAAAGCCACCTTGTAGTCACTTTTTCTCTAATCCTCTCCACCTCCAACACTCTCTCCATCTATCCAGTTTTGCTCCGTCCGATCAGGGCGTCTAAACCAACTCAACTTGGACTAAGTCAACAAAAATACAGACTTTTCTGTCTCTTTTCTTTTCTCCGCATACCATCTCCATTCACATTTTTCCTCTCGACGGGGGCTCTTTTTCTTTTACTGTCTGCATTTCTCTCTATTTCTTTTTTGTCTTCAAAGTTTTTCTTGTTTCATTTTTTGTGTCTTCTTCTTCTTCTTCTTCTTCATTTTCGCACCTGTCTCAATTTTTGACAGTTTTCTCCGTCAACTTTTTTTTCGAAAAAAAAAACGTTTCCCGCCTCTTTTACATGTTTGACTAMAGGGTTTAACCTAGTTTTCTTAGTGGTCTTCTTGTCATACCACTACTTTTTTTTTGGAAAAAATACTGTTTCAAAATTTTCATTTTTGAACATTTTACAGATTTTTTTCAATGTTGTTCTTATAACTTCTAGAAATTAATTGAAACTATTCTGAGGACAACACCAAAAAACGTTTTTTTTCATTATTTTCTAAAAAATGTTTCGGTAATAAAACCGGGTACAAAAACTCCTCAAAAATGTTTCAATACATTTTTTTGTTTACTTTCAAAAAATGAGTCAGACCTCCTCTCTAAAAAAGTAAACCTATAACCTCCATACAGTTGAAACCAATGCCACTTTTTTGTTCTGATTTGTAGCAAAGCTTTTTTTTTATTCTCAATAGGTTTAAAAAAAATTATGACCACTGTATTAGCAATCAAGAAGTTACAGCTAATTTTTTTTTCAATTCGGTGAACATGCGAAATTCCTCTGTTGATTAATTTCCTCGACTTCTTTGGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCAATTTTTGACAGTTTTCTC</pcr_primer_p1>
		<pcr_primer_p2>GGTGTTGTCCTCAGAATAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TCTCAATTTTTGACAGTTTTCTCCGTCAACTTTTTTTTCGAAAAAAAAAACGTTTCCCGCCTCTTTTACATGTTTGACTACAGGGTTTAACCTAGTTTTCTTAGTGGTCTTCTTGTCATACCACTACTTTTTTTTTGGAAAAAATACTGTTTCAAAATTTTCATTTTTGAACATTTTACAGATTTTTTTCAATGTTGTTCTTATAACTTCTAGAAATTAATTGAAACTATTCTGAGGACAACACC</canonical_amplicon>
		<polymorphic_amplicon>TCTCAATTTTTGACAGTTTTCTCCGTCAACTTTTTTTTCGAAAAAAAAAACGTTTCCCGCCTCTTTTACATGTTTGACTAMAGGGTTTAACCTAGTTTTCTTAGTGGTCTTCTTGTCATACCACTACTTTTTTTTTGGAAAAAATACTGTTTCAAAATTTTCATTTTTGAACATTTTACAGATTTTTTTCAATGTTGTTCTTATAACTTCTAGAAATTAATTGAAACTATTCTGAGGACAACACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19706</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>296767</contig_pos>
        <strand></strand>
        <context>TTTCCCGCCT[C/T]TTTTACATGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAGTTTTCTCCGTCAACTTTTTTTTCGAAAAAAAAAACGTTTCCCGCCT</left_flank>
        <right_flank>TTTTACATGTTTGACTACAGGGTTTAACCTAGTTTTCTTAGTGGTCTTCT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGTCCGTAATAGGGATCCTTTAAAAAATAATTTTTATCAAATAATCGATTCTCTCAGAATAATCAGATCCAATTTGAAAACATTCAAAAACTTTTAGTATCAGGTTGTTAGAGCAACCTCTCTTTACTAAAGCCACCTTGTAGTCACTTTTTCTCTAATCCTCTCCACCTCCAACACTCTCTCCATCTATCCAGTTTTGCTCCGTCCGATCAGGGCGTCTAAACCAACTCAACTTGGACTAAGTCAACAAAAATACAGACTTTTCTGTCTCTTTTCTTTTCTCCGCATACCATCTCCATTCACATTTTTCCTCTCGACGGGGGCTCTTTTTCTTTTACTGTCTGCATTTCTCTCTATTTCTTTTTTGTCTTCAAAGTTTTTCTTGTTTCATTTTTTGTGTCTTCTTCTTCTTCTTCTTCTTCATTTTCGCACCTGTCTCAATTTTTGACAGTTTTCTCCGTCAACTTTTTTTTCGAAAAAAAAAACGTTTCCCGCCTCTTTTACATGTTTGACTACAGGGTTTAACCTAGTTTTCTTAGTGGTCTTCTTGTCATACCACTACTTTTTTTTTGGAAAAAATACTGTTTCAAAATTTTCATTTTTGAACATTTTACAGATTTTTTTCAATGTTGTTCTTATAACTTCTAGAAATTAATTGAAACTATTCTGAGGACAACACCAAAAAACGTTTTTTTTCATTATTTTCTAAAAAATGTTTCGGTAATAAAACCGGGTACAAAAACTCCTCAAAAATGTTTCAATACATTTTTTTGTTTACTTTCAAAAAATGAGTCAGACCTCCTCTCTAAAAAAGTAAACCTATAACCTCCATACAGTTGAAACCAATGCCACTTTTTTGTTCTGATTTGTAGCAAAGCTTTTTTTTTATTCTCAATAGGTTTAAAAAAAATTATGACCACTGTATTAGCAATCAAGAAGTTACAGCTAATTTTTTTTTCAATTCGGTGAACATGCGAAATTCCTCTGTTGATTAATTT</canonical>
            <polymorphic>AATGTCCGTAATAGGGATCCTTTAAAAAATAATTTTTATCAAATAATCGATTCTCTCAGAATAATCAGATCCAATTTGAAAACATTCAAAAACTTTTAGTATCAGGTTGTTAGAGCAACCTCTCTTTACTAAAGCCACCTTGTAGTCACTTTTTCTCTAATCCTCTCCACCTCCAACACTCTCTCCATCTATCCAGTTTTGCTCCGTCCGATCAGGGCGTCTAAACCAACTCAACTTGGACTAAGTCAACAAAAATACAGACTTTTCTGTCTCTTTTCTTTTCTCCGCATACCATCTCCATTCACATTTTTCCTCTCGACGGGGGCTCTTTTTCTTTTACTGTCTGCATTTCTCTCTATTTCTTTTTTGTCTTCAAAGTTTTTCTTGTTTCATTTTTTGTGTCTTCTTCTTCTTCTTCTTCTTCATTTTCGCACCTGTCTCAATTTTTGACAGTTTTCTCCGTCAACTTTTTTTTCGAAAAAAAAAACGTTTCCCGCCTYTTTTACATGTTTGACTACAGGGTTTAACCTAGTTTTCTTAGTGGTCTTCTTGTCATACCACTACTTTTTTTTTGGAAAAAATACTGTTTCAAAATTTTCATTTTTGAACATTTTACAGATTTTTTTCAATGTTGTTCTTATAACTTCTAGAAATTAATTGAAACTATTCTGAGGACAACACCAAAAAACGTTTTTTTTCATTATTTTCTAAAAAATGTTTCGGTAATAAAACCGGGTACAAAAACTCCTCAAAAATGTTTCAATACATTTTTTTGTTTACTTTCAAAAAATGAGTCAGACCTCCTCTCTAAAAAAGTAAACCTATAACCTCCATACAGTTGAAACCAATGCCACTTTTTTGTTCTGATTTGTAGCAAAGCTTTTTTTTTATTCTCAATAGGTTTAAAAAAAATTATGACCACTGTATTAGCAATCAAGAAGTTACAGCTAATTTTTTTTTCAATTCGGTGAACATGCGAAATTCCTCTGTTGATTAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCAATTTTTGACAGTTTTCTC</pcr_primer_p1>
		<pcr_primer_p2>GGTGTTGTCCTCAGAATAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TCTCAATTTTTGACAGTTTTCTCCGTCAACTTTTTTTTCGAAAAAAAAAACGTTTCCCGCCTCTTTTACATGTTTGACTACAGGGTTTAACCTAGTTTTCTTAGTGGTCTTCTTGTCATACCACTACTTTTTTTTTGGAAAAAATACTGTTTCAAAATTTTCATTTTTGAACATTTTACAGATTTTTTTCAATGTTGTTCTTATAACTTCTAGAAATTAATTGAAACTATTCTGAGGACAACACC</canonical_amplicon>
		<polymorphic_amplicon>TCTCAATTTTTGACAGTTTTCTCCGTCAACTTTTTTTTCGAAAAAAAAAACGTTTCCCGCCTYTTTTACATGTTTGACTACAGGGTTTAACCTAGTTTTCTTAGTGGTCTTCTTGTCATACCACTACTTTTTTTTTGGAAAAAATACTGTTTCAAAATTTTCATTTTTGAACATTTTACAGATTTTTTTCAATGTTGTTCTTATAACTTCTAGAAATTAATTGAAACTATTCTGAGGACAACACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19727</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>296537</contig_pos>
        <strand>+</strand>
        <context>GACTTTTCTG[C/T]CTCTTTTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTAAACCAACTCAACTTGGACTAAGTCAACAAAAATACAGACTTTTCTG</left_flank>
        <right_flank>CTCTTTTCTTTTCTCCGCATACCATCTCCATTCACATTTTTCCTCTCGAC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTGTGTGGAACAGAAAAAATATTTTTAAAATTAAAAGCAAAATAAATCCAAGAAATCGATTTTCTCCTGATAATCAAGCCTATTTGAAATTGGCGAAAGTTCTTGTAAAAAATTTCAGAAGCTTCTTTATCGTATTATAACATCTCTTTGCATGTTAACGATCTAATAATTTTTGAAGTCAACCAAAGTGAAAATCATTTTGTGAATCAGAAAAAAATACATTTAAACAATGTCCGTAATAGGGATCCTTTAAAAAATAATTTTTATCAAATAATCGATTCTCTCAGAATAATCAGATCCAATTTGAAAACATTCAAAAACTTTTAGTATCAGGTTGTTAGAGCAACCTCTCTTTACTAAAGCCACCTTGTAGTCACTTTTTCTCTAATCCTCTCCACCTCCAACACTCTCTCCATCTATCCAGTTTTGCTCCGTCCGATCAGGGCGTCTAAACCAACTCAACTTGGACTAAGTCAACAAAAATACAGACTTTTCTGTCTCTTTTCTTTTCTCCGCATACCATCTCCATTCACATTTTTCCTCTCGACGGGGGCTCTTTTTCTTTTACTGTCTGCATTTCTCTCTATTTCTTTTTTGTCTTCAAAGTTTTTCTTGTTTCATTTTTTGTGTCTTCTTCTTCTTCTTCTTCTTCATTTTCGCACCTGTCTCAATTTTTGACAGTTTTCTCCGTCAACTTTTTTTTCGAAAAAAAAAACGTTTCCCGCCTCTTTTACATGTTTGACTACAGGGTTTAACCTAGTTTTCTTAGTGGTCTTCTTGTCATACCACTACTTTTTTTTTGGAAAAAATACTGTTTCAAAATTTTCATTTTTGAACATTTTACAGATTTTTTTCAATGTTGTTCTTATAACTTCTAGAAATTAATTGAAACTATTCTGAGGACAACACCAAAAAACGTTTTTTTTCATTATTTTCTAAAAAATGTTTCGGTAATAAAACCGGGTACAAAAACTCCTCAAAAATGTTTCAATACATTT</canonical>
            <polymorphic>TATTGTGTGGAACAGAAAAAATATTTTTAAAATTAAAAGCAAAATAAATCCAAGAAATCGATTTTCTCCTGATAATCAAGCCTATTTGAAATTGGCGAAAGTTCTTGTAAAAAATTTCAGAAGCTTCTTTATCGTATTATAACATCTCTTTGCATGTTAACGATCTAATAATTTTTGAAGTCAACCAAAGTGAAAATCATTTTGTGAATCAGAAAAAAATACATTTAAACAATGTCCGTAATAGGGATCCTTTAAAAAATAATTTTTATCAAATAATCGATTCTCTCAGAATAATCAGATCCAATTTGAAAACATTCAAAAACTTTTAGTATCAGGTTGTTAGAGCAACCTCTCTTTACTAAAGCCACCTTGTAGTCACTTTTTCTCTAATCCTCTCCACCTCCAACACTCTCTCCATCTATCCAGTTTTGCTCCGTCCGATCAGGGCGTCTAAACCAACTCAACTTGGACTAAGTCAACAAAAATACAGACTTTTCTGYCTCTTTTCTTTTCTCCGCATACCATCTCCATTCACATTTTTCCTCTCGACGGGGGCTCTTTTTCTTTTACTGTCTGCATTTCTCTCTATTTCTTTTTTGTCTTCAAAGTTTTTCTTGTTTCATTTTTTGTGTCTTCTTCTTCTTCTTCTTCTTCATTTTCGCACCTGTCTCAATTTTTGACAGTTTTCTCCGTCAACTTTTTTTTCGAAAAAAAAAACGTTTCCCGCCTCTTTTACATGTTTGACTACAGGGTTTAACCTAGTTTTCTTAGTGGTCTTCTTGTCATACCACTACTTTTTTTTTGGAAAAAATACTGTTTCAAAATTTTCATTTTTGAACATTTTACAGATTTTTTTCAATGTTGTTCTTATAACTTCTAGAAATTAATTGAAACTATTCTGAGGACAACACCAAAAAACGTTTTTTTTCATTATTTTCTAAAAAATGTTTCGGTAATAAAACCGGGTACAAAAACTCCTCAAAAATGTTTCAATACATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNNNNGTC</site>
                <isoschizomers>
                    <enzyme>AasI</enzyme>
                    <enzyme>DrdI</enzyme>
                    <enzyme>DseDI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTTTTCTCTAATCCTCTCCAC</pcr_primer_p1>
		<pcr_primer_p2>AAATGAAACAAGAAAAACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACTTTTTCTCTAATCCTCTCCACCTCCAACACTCTCTCCATCTATCCAGTTTTGCTCCGTCCGATCAGGGCGTCTAAACCAACTCAACTTGGACTAAGTCAACAAAAATACAGACTTTTCTGTCTCTTTTCTTTTCTCCGCATACCATCTCCATTCACATTTTTCCTCTCGACGGGGGCTCTTTTTCTTTTACTGTCTGCATTTCTCTCTATTTCTTTTTTGTCTTCAAAGTTTTTCTTGTTTCATTT</canonical_amplicon>
		<polymorphic_amplicon>ACTTTTTCTCTAATCCTCTCCACCTCCAACACTCTCTCCATCTATCCAGTTTTGCTCCGTCCGATCAGGGCGTCTAAACCAACTCAACTTGGACTAAGTCAACAAAAATACAGACTTTTCTGYCTCTTTTCTTTTCTCCGCATACCATCTCCATTCACATTTTTCCTCTCGACGGGGGCTCTTTTTCTTTTACTGTCTGCATTTCTCTCTATTTCTTTTTTGTCTTCAAAGTTTTTCTTGTTTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19728</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>296405</contig_pos>
        <strand>+</strand>
        <context>ACTAAAGCCW[C/T]CTTGTAGTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAACTTTTAGTATCAGGTTGTTAGAGCAACCTCTCTTTACTAAAGCCA</left_flank>
        <right_flank>CTTGTAGTCACTTTTTCTCTAATCCTCTCCACCTCCAACACTCTCTCCAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAAATAGGCTTAAAAATATTGCAATTGGCTTTTGCGCCTTTAACGGGACCCCCGCTTTTGAAGTTTTTCGATGTCGGACAATATTTTGTCATTGATCAATCAGCTTTTCGAAATCAACCAAAAATAAATGTATTGTGTGGAACAGAAAAAATATTTTTAAAATTAAAAGCAAAATAAATCCAAGAAATCGATTTTCTCCTGATAATCAAGCCTATTTGAAATTGGCGAAAGTTCTTGTAAAAAATTTCAGAAGCTTCTTTATCGTATTATAACATCTCTTTGCATGTTAACGATCTAATAATTTTTGAAGTCAACCAAAGTGAAAATCATTTTGTGAATCAGAAAAAAATACATTTAAACAATGTCCGTAATAGGGATCCTTTAAAAAATAATTTTTATCAAATAATCGATTCTCTCAGAATAATCAGATCCAATTTGAAAACATTCAAAAACTTTTAGTATCAGGTTGTTAGAGCAACCTCTCTTTACTAAAGCCACCTTGTAGTCACTTTTTCTCTAATCCTCTCCACCTCCAACACTCTCTCCATCTATCCAGTTTTGCTCCGTCCGATCAGGGCGTCTAAACCAACTCAACTTGGACTAAGTCAACAAAAATACAGACTTTTCTGTCTCTTTTCTTTTCTCCGCATACCATCTCCATTCACATTTTTCCTCTCGACGGGGGCTCTTTTTCTTTTACTGTCTGCATTTCTCTCTATTTCTTTTTTGTCTTCAAAGTTTTTCTTGTTTCATTTTTTGTGTCTTCTTCTTCTTCTTCTTCTTCATTTTCGCACCTGTCTCAATTTTTGACAGTTTTCTCCGTCAACTTTTTTTTCGAAAAAAAAAACGTTTCCCGCCTCTTTTACATGTTTGACTACAGGGTTTAACCTAGTTTTCTTAGTGGTCTTCTTGTCATACCACTACTTTTTTTTTGGAAAAAATACTGTTTCAAAATTTTCATTTTTGAACATTTTACAGATTTTTTTCAATGTTGTTCT</canonical>
            <polymorphic>TGAAAATAGGCTTAAAAATATTGCAATTGGCTTTTGCGCCTTTAACGGGACCCCCGCTTTTGAAGTTTTTCGATGTCGGACAATATTTTGTCATTGATCAATCAGCTTTTCGAAATCAACCAAAAATAAATGTATTGTGTGGAACAGAAAAAATATTTTTAAAATTAAAAGCAAAATAAATCCAAGAAATCGATTTTCTCCTGATAATCAAGCCTATTTGAAATTGGCGAAAGTTCTTGTAAAAAATTTCAGAAGCTTCTTTATCGTATTATAACATCTCTTTGCATGTTAACGATCTAATAATTTTTGAAGTCAACCAAAGTGAAAATCATTTTGTGAATCAGAAAAAAATACATTTAAACAATGTCCGTAATAGGGATCCTTTAAAAAATAATTTTTATCAAATAATCGATTCTCTCAGAATAATCAGATCCAATTTGAAAACATTCAAAAACTTTTAGTATCAGGTTGTTAGAGCAACCTCTCTTTACTAAAGCCAYCTTGTAGTCACTTTTTCTCTAATCCTCTCCACCTCCAACACTCTCTCCATCTATCCAGTTTTGCTCCGTCCGATCAGGGCGTCTAAACCAACTCAACTTGGACTAAGTCAACAAAAATACAGACTTTTCTGTCTCTTTTCTTTTCTCCGCATACCATCTCCATTCACATTTTTCCTCTCGACGGGGGCTCTTTTTCTTTTACTGTCTGCATTTCTCTCTATTTCTTTTTTGTCTTCAAAGTTTTTCTTGTTTCATTTTTTGTGTCTTCTTCTTCTTCTTCTTCTTCATTTTCGCACCTGTCTCAATTTTTGACAGTTTTCTCCGTCAACTTTTTTTTCGAAAAAAAAAACGTTTCCCGCCTCTTTTACATGTTTGACTACAGGGTTTAACCTAGTTTTCTTAGTGGTCTTCTTGTCATACCACTACTTTTTTTTTGGAAAAAATACTGTTTCAAAATTTTCATTTTTGAACATTTTACAGATTTTTTTCAATGTTGTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>183 161 139 126 110 97 78 32 21 17 14 11 9 2</canonical_bands>
                <polymorphic_bands>183 172 139 126 110 97 78 32 21 17 14 9 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTAAACAATGTCCGTAATAGG</pcr_primer_p1>
		<pcr_primer_p2>TAGTCCAAGTTGAGTTGGTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTTAAACAATGTCCGTAATAGGGATCCTTTAAAAAATAATTTTTATCAAATAATCGATTCTCTCAGAATAATCAGATCCAATTTGAAAACATTCAAAAACTTTTAGTATCAGGTTGTTAGAGCAACCTCTCTTTACTAAAGCCACCTTGTAGTCACTTTTTCTCTAATCCTCTCCACCTCCAACACTCTCTCCATCTATCCAGTTTTGCTCCGTCCGATCAGGGCGTCTAAACCAACTCAACTTGGACTA</canonical_amplicon>
		<polymorphic_amplicon>ATTTAAACAATGTCCGTAATAGGGATCCTTTAAAAAATAATTTTTATCAAATAATCGATTCTCTCAGAATAATCAGATCCAATTTGAAAACATTCAAAAACTTTTAGTATCAGGTTGTTAGAGCAACCTCTCTTTACTAAAGCCAYCTTGTAGTCACTTTTTCTCTAATCCTCTCCACCTCCAACACTCTCTCCATCTATCCAGTTTTGCTCCGTCCGATCAGGGCGTCTAAACCAACTCAACTTGGACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19729</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>296404</contig_pos>
        <strand>+</strand>
        <context>TACTAAAGCC[A/T]YCTTGTAGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAAAACTTTTAGTATCAGGTTGTTAGAGCAACCTCTCTTTACTAAAGCC</left_flank>
        <right_flank>CCTTGTAGTCACTTTTTCTCTAATCCTCTCCACCTCCAACACTCTCTCCA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAAAATAGGCTTAAAAATATTGCAATTGGCTTTTGCGCCTTTAACGGGACCCCCGCTTTTGAAGTTTTTCGATGTCGGACAATATTTTGTCATTGATCAATCAGCTTTTCGAAATCAACCAAAAATAAATGTATTGTGTGGAACAGAAAAAATATTTTTAAAATTAAAAGCAAAATAAATCCAAGAAATCGATTTTCTCCTGATAATCAAGCCTATTTGAAATTGGCGAAAGTTCTTGTAAAAAATTTCAGAAGCTTCTTTATCGTATTATAACATCTCTTTGCATGTTAACGATCTAATAATTTTTGAAGTCAACCAAAGTGAAAATCATTTTGTGAATCAGAAAAAAATACATTTAAACAATGTCCGTAATAGGGATCCTTTAAAAAATAATTTTTATCAAATAATCGATTCTCTCAGAATAATCAGATCCAATTTGAAAACATTCAAAAACTTTTAGTATCAGGTTGTTAGAGCAACCTCTCTTTACTAAAGCCACCTTGTAGTCACTTTTTCTCTAATCCTCTCCACCTCCAACACTCTCTCCATCTATCCAGTTTTGCTCCGTCCGATCAGGGCGTCTAAACCAACTCAACTTGGACTAAGTCAACAAAAATACAGACTTTTCTGTCTCTTTTCTTTTCTCCGCATACCATCTCCATTCACATTTTTCCTCTCGACGGGGGCTCTTTTTCTTTTACTGTCTGCATTTCTCTCTATTTCTTTTTTGTCTTCAAAGTTTTTCTTGTTTCATTTTTTGTGTCTTCTTCTTCTTCTTCTTCTTCATTTTCGCACCTGTCTCAATTTTTGACAGTTTTCTCCGTCAACTTTTTTTTCGAAAAAAAAAACGTTTCCCGCCTCTTTTACATGTTTGACTACAGGGTTTAACCTAGTTTTCTTAGTGGTCTTCTTGTCATACCACTACTTTTTTTTTGGAAAAAATACTGTTTCAAAATTTTCATTTTTGAACATTTTACAGATTTTTTTCAATGTTGTTC</canonical>
            <polymorphic>ATGAAAATAGGCTTAAAAATATTGCAATTGGCTTTTGCGCCTTTAACGGGACCCCCGCTTTTGAAGTTTTTCGATGTCGGACAATATTTTGTCATTGATCAATCAGCTTTTCGAAATCAACCAAAAATAAATGTATTGTGTGGAACAGAAAAAATATTTTTAAAATTAAAAGCAAAATAAATCCAAGAAATCGATTTTCTCCTGATAATCAAGCCTATTTGAAATTGGCGAAAGTTCTTGTAAAAAATTTCAGAAGCTTCTTTATCGTATTATAACATCTCTTTGCATGTTAACGATCTAATAATTTTTGAAGTCAACCAAAGTGAAAATCATTTTGTGAATCAGAAAAAAATACATTTAAACAATGTCCGTAATAGGGATCCTTTAAAAAATAATTTTTATCAAATAATCGATTCTCTCAGAATAATCAGATCCAATTTGAAAACATTCAAAAACTTTTAGTATCAGGTTGTTAGAGCAACCTCTCTTTACTAAAGCCWCCTTGTAGTCACTTTTTCTCTAATCCTCTCCACCTCCAACACTCTCTCCATCTATCCAGTTTTGCTCCGTCCGATCAGGGCGTCTAAACCAACTCAACTTGGACTAAGTCAACAAAAATACAGACTTTTCTGTCTCTTTTCTTTTCTCCGCATACCATCTCCATTCACATTTTTCCTCTCGACGGGGGCTCTTTTTCTTTTACTGTCTGCATTTCTCTCTATTTCTTTTTTGTCTTCAAAGTTTTTCTTGTTTCATTTTTTGTGTCTTCTTCTTCTTCTTCTTCTTCATTTTCGCACCTGTCTCAATTTTTGACAGTTTTCTCCGTCAACTTTTTTTTCGAAAAAAAAAACGTTTCCCGCCTCTTTTACATGTTTGACTACAGGGTTTAACCTAGTTTTCTTAGTGGTCTTCTTGTCATACCACTACTTTTTTTTTGGAAAAAATACTGTTTCAAAATTTTCATTTTTGAACATTTTACAGATTTTTTTCAATGTTGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>183 161 140 126 110 97 77 32 21 17 14 11 9 2</canonical_bands>
                <polymorphic_bands>183 172 140 126 110 97 77 32 21 17 14 9 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTAAACAATGTCCGTAATAGG</pcr_primer_p1>
		<pcr_primer_p2>TAGTCCAAGTTGAGTTGGTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTTAAACAATGTCCGTAATAGGGATCCTTTAAAAAATAATTTTTATCAAATAATCGATTCTCTCAGAATAATCAGATCCAATTTGAAAACATTCAAAAACTTTTAGTATCAGGTTGTTAGAGCAACCTCTCTTTACTAAAGCCACCTTGTAGTCACTTTTTCTCTAATCCTCTCCACCTCCAACACTCTCTCCATCTATCCAGTTTTGCTCCGTCCGATCAGGGCGTCTAAACCAACTCAACTTGGACTA</canonical_amplicon>
		<polymorphic_amplicon>ATTTAAACAATGTCCGTAATAGGGATCCTTTAAAAAATAATTTTTATCAAATAATCGATTCTCTCAGAATAATCAGATCCAATTTGAAAACATTCAAAAACTTTTAGTATCAGGTTGTTAGAGCAACCTCTCTTTACTAAAGCCWCCTTGTAGTCACTTTTTCTCTAATCCTCTCCACCTCCAACACTCTCTCCATCTATCCAGTTTTGCTCCGTCCGATCAGGGCGTCTAAACCAACTCAACTTGGACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19730</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>370168</contig_pos>
        <strand>+</strand>
        <context>GTTTGCATTC[A/C]GAGATGTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTC</left_flank>
        <right_flank>GAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTAGTTTTTTTCAGAAAAGTTTGAAAATCAAATCATTTTTGTAGTCCAAAGAATGAGTATTTGATGAAAAAAACATACTTGCAAAATTCCGGGCCGGTATATATATTTTTTGACTACTTTCTACTTTGATAATTTTCAAGTATGTAACTTTTTTCTTTTTTAATTCAAAAAAATGTCCCAATTTTTCAGTGGAAATTTTTTTTACTGAGAAGGGGCGGAAAATTGTCGCTTCGGCCCATCGGCCCGGCCCGGCCCGTTGCAAGTATTGAAAAAAAGAATGTAAGGTTGAAATGAATTTCAAACAAAACTCAAAAACAACATCTTTCATCGAGACATATTCTACAAAAACACATTTGTGGTTTGGGAGTCCGAAAAGTTCGATGAAGGGTCCATGACTTCCAGAAAACGATAAGGTTTTTTTTTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTAACAGGCGTGGAGTAAAATATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAA</canonical>
            <polymorphic>AGTAGTTTTTTTCAGAAAAGTTTGAAAATCAAATCATTTTTGTAGTCCAAAGAATGAGTATTTGATGAAAAAAACATACTTGCAAAATTCCGGGCCGGTATATATATTTTTTGACTACTTTCTACTTTGATAATTTTCAAGTATGTAACTTTTTTCTTTTTTAATTCAAAAAAATGTCCCAATTTTTCAGTGGAAATTTTTTTTACTGAGAAGGGGCGGAAAATTGTCGCTTCGGCCCATCGGCCCGGCCCGGCCCGTTGCAAGTATTGAAAAAAAGAATGTAAGGTTGAAATGAATTTCAAACAAAACTCAAAAACAACATCTTTCATCGAGACATATTCTACAAAAACACATTTGTGGTTTGGGAGTCCGAAAAGTTCGATGAAGGGTCCATGACTTCCAGAAAACGATAAGGTTTTTTTTTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCMGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTAACAGGCGTGGAGTAAAATATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCAAAAACAACATCTTTCATC</pcr_primer_p1>
		<pcr_primer_p2>CACACACAACTTACAATCAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACTCAAAAACAACATCTTTCATCGAGACATATTCTACAAAAACACATTTGTGGTTTGGGAGTCCGAAAAGTTCGATGAAGGGTCCATGACTTCCAGAAAACGATAAGGTTTTTTTTTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTG</canonical_amplicon>
		<polymorphic_amplicon>ACTCAAAAACAACATCTTTCATCGAGACATATTCTACAAAAACACATTTGTGGTTTGGGAGTCCGAAAAGTTCGATGAAGGGTCCATGACTTCCAGAAAACGATAAGGTTTTTTTTTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCMGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19731</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>370184</contig_pos>
        <strand>+</strand>
        <context>GTGAAATCGT[A/G]ATGGAAGCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGT</left_flank>
        <right_flank>ATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGTAAAAC</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTTTGAAAATCAAATCATTTTTGTAGTCCAAAGAATGAGTATTTGATGAAAAAAACATACTTGCAAAATTCCGGGCCGGTATATATATTTTTTGACTACTTTCTACTTTGATAATTTTCAAGTATGTAACTTTTTTCTTTTTTAATTCAAAAAAATGTCCCAATTTTTCAGTGGAAATTTTTTTTACTGAGAAGGGGCGGAAAATTGTCGCTTCGGCCCATCGGCCCGGCCCGGCCCGTTGCAAGTATTGAAAAAAAGAATGTAAGGTTGAAATGAATTTCAAACAAAACTCAAAAACAACATCTTTCATCGAGACATATTCTACAAAAACACATTTGTGGTTTGGGAGTCCGAAAAGTTCGATGAAGGGTCCATGACTTCCAGAAAACGATAAGGTTTTTTTTTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTAACAGGCGTGGAGTAAAATATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACT</canonical>
            <polymorphic>AAAGTTTGAAAATCAAATCATTTTTGTAGTCCAAAGAATGAGTATTTGATGAAAAAAACATACTTGCAAAATTCCGGGCCGGTATATATATTTTTTGACTACTTTCTACTTTGATAATTTTCAAGTATGTAACTTTTTTCTTTTTTAATTCAAAAAAATGTCCCAATTTTTCAGTGGAAATTTTTTTTACTGAGAAGGGGCGGAAAATTGTCGCTTCGGCCCATCGGCCCGGCCCGGCCCGTTGCAAGTATTGAAAAAAAGAATGTAAGGTTGAAATGAATTTCAAACAAAACTCAAAAACAACATCTTTCATCGAGACATATTCTACAAAAACACATTTGTGGTTTGGGAGTCCGAAAAGTTCGATGAAGGGTCCATGACTTCCAGAAAACGATAAGGTTTTTTTTTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTRATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTAACAGGCGTGGAGTAAAATATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTAAAACAAACAGACACACTTT</pcr_primer_p1>
		<pcr_primer_p2>AGTTTCCTGAAAGGAATTTTAAG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACT</canonical_amplicon>
		<polymorphic_amplicon>TTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTRATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19732</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>370204</contig_pos>
        <strand>+</strand>
        <context>CTCTAGAATT[A/G]CTTCTGATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATT</left_flank>
        <right_flank>CTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGTAGTCCAAAGAATGAGTATTTGATGAAAAAAACATACTTGCAAAATTCCGGGCCGGTATATATATTTTTTGACTACTTTCTACTTTGATAATTTTCAAGTATGTAACTTTTTTCTTTTTTAATTCAAAAAAATGTCCCAATTTTTCAGTGGAAATTTTTTTTACTGAGAAGGGGCGGAAAATTGTCGCTTCGGCCCATCGGCCCGGCCCGGCCCGTTGCAAGTATTGAAAAAAAGAATGTAAGGTTGAAATGAATTTCAAACAAAACTCAAAAACAACATCTTTCATCGAGACATATTCTACAAAAACACATTTGTGGTTTGGGAGTCCGAAAAGTTCGATGAAGGGTCCATGACTTCCAGAAAACGATAAGGTTTTTTTTTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTAACAGGCGTGGAGTAAAATATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACTGACAGAAAACAGAGAGACGC</canonical>
            <polymorphic>TTTTTGTAGTCCAAAGAATGAGTATTTGATGAAAAAAACATACTTGCAAAATTCCGGGCCGGTATATATATTTTTTGACTACTTTCTACTTTGATAATTTTCAAGTATGTAACTTTTTTCTTTTTTAATTCAAAAAAATGTCCCAATTTTTCAGTGGAAATTTTTTTTACTGAGAAGGGGCGGAAAATTGTCGCTTCGGCCCATCGGCCCGGCCCGGCCCGTTGCAAGTATTGAAAAAAAGAATGTAAGGTTGAAATGAATTTCAAACAAAACTCAAAAACAACATCTTTCATCGAGACATATTCTACAAAAACACATTTGTGGTTTGGGAGTCCGAAAAGTTCGATGAAGGGTCCATGACTTCCAGAAAACGATAAGGTTTTTTTTTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTRCTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTAACAGGCGTGGAGTAAAATATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACTGACAGAAAACAGAGAGACGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTAAAACAAACAGACACACTTT</pcr_primer_p1>
		<pcr_primer_p2>AGTTTCCTGAAAGGAATTTTAAG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACT</canonical_amplicon>
		<polymorphic_amplicon>TTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTRCTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19733</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>370229</contig_pos>
        <strand>+</strand>
        <context>TTGTGTGTGG[A/T]AAAACTAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGG</left_flank>
        <right_flank>AAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGATGAAAAAAACATACTTGCAAAATTCCGGGCCGGTATATATATTTTTTGACTACTTTCTACTTTGATAATTTTCAAGTATGTAACTTTTTTCTTTTTTAATTCAAAAAAATGTCCCAATTTTTCAGTGGAAATTTTTTTTACTGAGAAGGGGCGGAAAATTGTCGCTTCGGCCCATCGGCCCGGCCCGGCCCGTTGCAAGTATTGAAAAAAAGAATGTAAGGTTGAAATGAATTTCAAACAAAACTCAAAAACAACATCTTTCATCGAGACATATTCTACAAAAACACATTTGTGGTTTGGGAGTCCGAAAAGTTCGATGAAGGGTCCATGACTTCCAGAAAACGATAAGGTTTTTTTTTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTAACAGGCGTGGAGTAAAATATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACTGACAGAAAACAGAGAGACGCAACTTAATTTATCTTCCTTATGTAT</canonical>
            <polymorphic>TTGATGAAAAAAACATACTTGCAAAATTCCGGGCCGGTATATATATTTTTTGACTACTTTCTACTTTGATAATTTTCAAGTATGTAACTTTTTTCTTTTTTAATTCAAAAAAATGTCCCAATTTTTCAGTGGAAATTTTTTTTACTGAGAAGGGGCGGAAAATTGTCGCTTCGGCCCATCGGCCCGGCCCGGCCCGTTGCAAGTATTGAAAAAAAGAATGTAAGGTTGAAATGAATTTCAAACAAAACTCAAAAACAACATCTTTCATCGAGACATATTCTACAAAAACACATTTGTGGTTTGGGAGTCCGAAAAGTTCGATGAAGGGTCCATGACTTCCAGAAAACGATAAGGTTTTTTTTTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGWAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTAACAGGCGTGGAGTAAAATATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACTGACAGAAAACAGAGAGACGCAACTTAATTTATCTTCCTTATGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTAAAACAAACAGACACACTTT</pcr_primer_p1>
		<pcr_primer_p2>AGTTTCCTGAAAGGAATTTTAAG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACT</canonical_amplicon>
		<polymorphic_amplicon>TTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGWAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19734</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>370300</contig_pos>
        <strand>+</strand>
        <context>TTTTGAAAAT[A/T]AAATATMATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAAT</left_flank>
        <right_flank>AAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTCAAGTATGTAACTTTTTTCTTTTTTAATTCAAAAAAATGTCCCAATTTTTCAGTGGAAATTTTTTTTACTGAGAAGGGGCGGAAAATTGTCGCTTCGGCCCATCGGCCCGGCCCGGCCCGTTGCAAGTATTGAAAAAAAGAATGTAAGGTTGAAATGAATTTCAAACAAAACTCAAAAACAACATCTTTCATCGAGACATATTCTACAAAAACACATTTGTGGTTTGGGAGTCCGAAAAGTTCGATGAAGGGTCCATGACTTCCAGAAAACGATAAGGTTTTTTTTTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTAACAGGCGTGGAGTAAAATATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACTGACAGAAAACAGAGAGACGCAACTTAATTTATCTTCCTTATGTATAAAACGCTACGCGCATCTGTTGGTCCCCCTGTCATTCTGTGGACTTTTGAAAAACTTAAAAAATAAATATA</canonical>
            <polymorphic>ATTTTCAAGTATGTAACTTTTTTCTTTTTTAATTCAAAAAAATGTCCCAATTTTTCAGTGGAAATTTTTTTTACTGAGAAGGGGCGGAAAATTGTCGCTTCGGCCCATCGGCCCGGCCCGGCCCGTTGCAAGTATTGAAAAAAAGAATGTAAGGTTGAAATGAATTTCAAACAAAACTCAAAAACAACATCTTTCATCGAGACATATTCTACAAAAACACATTTGTGGTTTGGGAGTCCGAAAAGTTCGATGAAGGGTCCATGACTTCCAGAAAACGATAAGGTTTTTTTTTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATWAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTAACAGGCGTGGAGTAAAATATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACTGACAGAAAACAGAGAGACGCAACTTAATTTATCTTCCTTATGTATAAAACGCTACGCGCATCTGTTGGTCCCCCTGTCATTCTGTGGACTTTTGAAAAACTTAAAAAATAAATATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>291 230 179 82 77 35 29 25 15 9 9 7 6 6</canonical_bands>
                <polymorphic_bands>291 230 204 82 77 35 29 15 9 9 7 6 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>160 142 97 91 73 66 59 48 44 41 30 27 26 21 18 18 15 14 10</canonical_bands>
                <polymorphic_bands>160 142 107 91 73 66 59 48 44 41 30 27 26 21 18 18 15 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCTGATTGTAAGTTGTGTGTG</pcr_primer_p1>
		<pcr_primer_p2>TACAGGAAAATTGACAAATGACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTA</canonical_amplicon>
		<polymorphic_amplicon>CTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATWAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19735</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>370321</contig_pos>
        <strand>+</strand>
        <context>GTGAAGAGCA[A/T]TCTTAAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCA</left_flank>
        <right_flank>TCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTTTTTAATTCAAAAAAATGTCCCAATTTTTCAGTGGAAATTTTTTTTACTGAGAAGGGGCGGAAAATTGTCGCTTCGGCCCATCGGCCCGGCCCGGCCCGTTGCAAGTATTGAAAAAAAGAATGTAAGGTTGAAATGAATTTCAAACAAAACTCAAAAACAACATCTTTCATCGAGACATATTCTACAAAAACACATTTGTGGTTTGGGAGTCCGAAAAGTTCGATGAAGGGTCCATGACTTCCAGAAAACGATAAGGTTTTTTTTTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTAACAGGCGTGGAGTAAAATATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACTGACAGAAAACAGAGAGACGCAACTTAATTTATCTTCCTTATGTATAAAACGCTACGCGCATCTGTTGGTCCCCCTGTCATTCTGTGGACTTTTGAAAAACTTAAAAAATAAATATAGATTAACGTGACCCCTTACGA</canonical>
            <polymorphic>TTCTTTTTTAATTCAAAAAAATGTCCCAATTTTTCAGTGGAAATTTTTTTTACTGAGAAGGGGCGGAAAATTGTCGCTTCGGCCCATCGGCCCGGCCCGGCCCGTTGCAAGTATTGAAAAAAAGAATGTAAGGTTGAAATGAATTTCAAACAAAACTCAAAAACAACATCTTTCATCGAGACATATTCTACAAAAACACATTTGTGGTTTGGGAGTCCGAAAAGTTCGATGAAGGGTCCATGACTTCCAGAAAACGATAAGGTTTTTTTTTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAWTCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTAACAGGCGTGGAGTAAAATATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACTGACAGAAAACAGAGAGACGCAACTTAATTTATCTTCCTTATGTATAAAACGCTACGCGCATCTGTTGGTCCCCCTGTCATTCTGTGGACTTTTGAAAAACTTAAAAAATAAATATAGATTAACGTGACCCCTTACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTGATTGTAAGTTGTGTGTG</pcr_primer_p1>
		<pcr_primer_p2>TACAGGAAAATTGACAAATGACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTA</canonical_amplicon>
		<polymorphic_amplicon>CTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAWTCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19736</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>370347</contig_pos>
        <strand>+</strand>
        <context>CAGGAAACTG[A/C]AATCTCTAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTG</left_flank>
        <right_flank>AATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATTTTTCAGTGGAAATTTTTTTTACTGAGAAGGGGCGGAAAATTGTCGCTTCGGCCCATCGGCCCGGCCCGGCCCGTTGCAAGTATTGAAAAAAAGAATGTAAGGTTGAAATGAATTTCAAACAAAACTCAAAAACAACATCTTTCATCGAGACATATTCTACAAAAACACATTTGTGGTTTGGGAGTCCGAAAAGTTCGATGAAGGGTCCATGACTTCCAGAAAACGATAAGGTTTTTTTTTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTAACAGGCGTGGAGTAAAATATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACTGACAGAAAACAGAGAGACGCAACTTAATTTATCTTCCTTATGTATAAAACGCTACGCGCATCTGTTGGTCCCCCTGTCATTCTGTGGACTTTTGAAAAACTTAAAAAATAAATATAGATTAACGTGACCCCTTACGAAAAACTGAGGTGCAAAGCGACGAACC</canonical>
            <polymorphic>CAATTTTTCAGTGGAAATTTTTTTTACTGAGAAGGGGCGGAAAATTGTCGCTTCGGCCCATCGGCCCGGCCCGGCCCGTTGCAAGTATTGAAAAAAAGAATGTAAGGTTGAAATGAATTTCAAACAAAACTCAAAAACAACATCTTTCATCGAGACATATTCTACAAAAACACATTTGTGGTTTGGGAGTCCGAAAAGTTCGATGAAGGGTCCATGACTTCCAGAAAACGATAAGGTTTTTTTTTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGMAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTAACAGGCGTGGAGTAAAATATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACTGACAGAAAACAGAGAGACGCAACTTAATTTATCTTCCTTATGTATAAAACGCTACGCGCATCTGTTGGTCCCCCTGTCATTCTGTGGACTTTTGAAAAACTTAAAAAATAAATATAGATTAACGTGACCCCTTACGAAAAACTGAGGTGCAAAGCGACGAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>284 234 153 96 88 81 50 14</canonical_bands>
                <polymorphic_bands>284 249 234 88 81 50 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCTGATTGTAAGTTGTGTGTG</pcr_primer_p1>
		<pcr_primer_p2>TACAGGAAAATTGACAAATGACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTA</canonical_amplicon>
		<polymorphic_amplicon>CTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGMAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19742</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>370375</contig_pos>
        <strand></strand>
        <context>TTAATCttaa[A/T]aatcttarta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAA</left_flank>
        <right_flank>AATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAAGGGGCGGAAAATTGTCGCTTCGGCCCATCGGCCCGGCCCGGCCCGTTGCAAGTATTGAAAAAAAGAATGTAAGGTTGAAATGAATTTCAAACAAAACTCAAAAACAACATCTTTCATCGAGACATATTCTACAAAAACACATTTGTGGTTTGGGAGTCCGAAAAGTTCGATGAAGGGTCCATGACTTCCAGAAAACGATAAGGTTTTTTTTTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTAACAGGCGTGGAGTAAAATATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACTGACAGAAAACAGAGAGACGCAACTTAATTTATCTTCCTTATGTATAAAACGCTACGCGCATCTGTTGGTCCCCCTGTCATTCTGTGGACTTTTGAAAAACTTAAAAAATAAATATAGATTAACGTGACCCCTTACGAAAAACTGAGGTGCAAAGCGACGAACCAAGCGACGAACCAAAAAAAAAGATTGAT</canonical>
            <polymorphic>GAGAAGGGGCGGAAAATTGTCGCTTCGGCCCATCGGCCCGGCCCGGCCCGTTGCAAGTATTGAAAAAAAGAATGTAAGGTTGAAATGAATTTCAAACAAAACTCAAAAACAACATCTTTCATCGAGACATATTCTACAAAAACACATTTGTGGTTTGGGAGTCCGAAAAGTTCGATGAAGGGTCCATGACTTCCAGAAAACGATAAGGTTTTTTTTTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAWAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTAACAGGCGTGGAGTAAAATATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACTGACAGAAAACAGAGAGACGCAACTTAATTTATCTTCCTTATGTATAAAACGCTACGCGCATCTGTTGGTCCCCCTGTCATTCTGTGGACTTTTGAAAAACTTAAAAAATAAATATAGATTAACGTGACCCCTTACGAAAAACTGAGGTGCAAAGCGACGAACCAAGCGACGAACCAAAAAAAAAGATTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTGATTGTAAGTTGTGTGTG</pcr_primer_p1>
		<pcr_primer_p2>TACAGGAAAATTGACAAATGACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTA</canonical_amplicon>
		<polymorphic_amplicon>CTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAWAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19750</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>370383</contig_pos>
        <strand></strand>
        <context>aawaatctta[A/G]taatattaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTA</left_flank>
        <right_flank>TAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGGAAAATTGTCGCTTCGGCCCATCGGCCCGGCCCGGCCCGTTGCAAGTATTGAAAAAAAGAATGTAAGGTTGAAATGAATTTCAAACAAAACTCAAAAACAACATCTTTCATCGAGACATATTCTACAAAAACACATTTGTGGTTTGGGAGTCCGAAAAGTTCGATGAAGGGTCCATGACTTCCAGAAAACGATAAGGTTTTTTTTTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTAACAGGCGTGGAGTAAAATATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACTGACAGAAAACAGAGAGACGCAACTTAATTTATCTTCCTTATGTATAAAACGCTACGCGCATCTGTTGGTCCCCCTGTCATTCTGTGGACTTTTGAAAAACTTAAAAAATAAATATAGATTAACGTGACCCCTTACGAAAAACTGAGGTGCAAAGCGACGAACCAAGCGACGAACCAAAAAAAAAGATTGATCGAGAATT</canonical>
            <polymorphic>GCGGAAAATTGTCGCTTCGGCCCATCGGCCCGGCCCGGCCCGTTGCAAGTATTGAAAAAAAGAATGTAAGGTTGAAATGAATTTCAAACAAAACTCAAAAACAACATCTTTCATCGAGACATATTCTACAAAAACACATTTGTGGTTTGGGAGTCCGAAAAGTTCGATGAAGGGTCCATGACTTCCAGAAAACGATAAGGTTTTTTTTTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTARTAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTAACAGGCGTGGAGTAAAATATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACTGACAGAAAACAGAGAGACGCAACTTAATTTATCTTCCTTATGTATAAAACGCTACGCGCATCTGTTGGTCCCCCTGTCATTCTGTGGACTTTTGAAAAACTTAAAAAATAAATATAGATTAACGTGACCCCTTACGAAAAACTGAGGTGCAAAGCGACGAACCAAGCGACGAACCAAAAAAAAAGATTGATCGAGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>237 230 179 82 80 77 35 25 18 9 9 7 6 6</canonical_bands>
                <polymorphic_bands>237 230 179 82 80 77 35 25 18 18 7 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCTGATTGTAAGTTGTGTGTG</pcr_primer_p1>
		<pcr_primer_p2>TACAGGAAAATTGACAAATGACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTA</canonical_amplicon>
		<polymorphic_amplicon>CTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTARTAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19771</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>370494</contig_pos>
        <strand>+</strand>
        <context>GTAATTTATT[A/T]GAATGCAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTCCTGTAACAGGCGTGGAGTAAAATATTGTTCTTTGTGTAATTTATT</left_flank>
        <right_flank>GAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCGAGACATATTCTACAAAAACACATTTGTGGTTTGGGAGTCCGAAAAGTTCGATGAAGGGTCCATGACTTCCAGAAAACGATAAGGTTTTTTTTTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTAACAGGCGTGGAGTAAAATATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACTGACAGAAAACAGAGAGACGCAACTTAATTTATCTTCCTTATGTATAAAACGCTACGCGCATCTGTTGGTCCCCCTGTCATTCTGTGGACTTTTGAAAAACTTAAAAAATAAATATAGATTAACGTGACCCCTTACGAAAAACTGAGGTGCAAAGCGACGAACCAAGCGACGAACCAAAAAAAAAGATTGATCGAGAATTTTCTGTTTTGGGTAGAATTTTCAGTTTAAATGAATACAATGCCCATCGGAACTTAAGCTTATAAATCGGAGTTGAAAAAACATTAATTTGAGCGATACTCTAGATTTTGTT</canonical>
            <polymorphic>CATCGAGACATATTCTACAAAAACACATTTGTGGTTTGGGAGTCCGAAAAGTTCGATGAAGGGTCCATGACTTCCAGAAAACGATAAGGTTTTTTTTTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTAACAGGCGTGGAGTAAAATATTGTTCTTTGTGTAATTTATTWGAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACTGACAGAAAACAGAGAGACGCAACTTAATTTATCTTCCTTATGTATAAAACGCTACGCGCATCTGTTGGTCCCCCTGTCATTCTGTGGACTTTTGAAAAACTTAAAAAATAAATATAGATTAACGTGACCCCTTACGAAAAACTGAGGTGCAAAGCGACGAACCAAGCGACGAACCAAAAAAAAAGATTGATCGAGAATTTTCTGTTTTGGGTAGAATTTTCAGTTTAAATGAATACAATGCCCATCGGAACTTAAGCTTATAAATCGGAGTTGAAAAAACATTAATTTGAGCGATACTCTAGATTTTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTTGTCAATTTTCCTGTAAC</pcr_primer_p1>
		<pcr_primer_p2>AAATTCTACCCAAAACAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>471</pcr_amplicon_size>
		<canonical_amplicon>TCATTTGTCAATTTTCCTGTAACAGGCGTGGAGTAAAATATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACTGACAGAAAACAGAGAGACGCAACTTAATTTATCTTCCTTATGTATAAAACGCTACGCGCATCTGTTGGTCCCCCTGTCATTCTGTGGACTTTTGAAAAACTTAAAAAATAAATATAGATTAACGTGACCCCTTACGAAAAACTGAGGTGCAAAGCGACGAACCAAGCGACGAACCAAAAAAAAAGATTGATCGAGAATTTTCTGTTTTGGGTAGAATTT</canonical_amplicon>
		<polymorphic_amplicon>TCATTTGTCAATTTTCCTGTAACAGGCGTGGAGTAAAATATTGTTCTTTGTGTAATTTATTWGAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACTGACAGAAAACAGAGAGACGCAACTTAATTTATCTTCCTTATGTATAAAACGCTACGCGCATCTGTTGGTCCCCCTGTCATTCTGTGGACTTTTGAAAAACTTAAAAAATAAATATAGATTAACGTGACCCCTTACGAAAAACTGAGGTGCAAAGCGACGAACCAAGCGACGAACCAAAAAAAAAGATTGATCGAGAATTTTCTGTTTTGGGTAGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19772</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>370522</contig_pos>
        <strand>+</strand>
        <context>GTAATATTTT[C/T]AAAAAATKTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTT</left_flank>
        <right_flank>AAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTGGTTTGGGAGTCCGAAAAGTTCGATGAAGGGTCCATGACTTCCAGAAAACGATAAGGTTTTTTTTTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTAACAGGCGTGGAGTAAAATATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACTGACAGAAAACAGAGAGACGCAACTTAATTTATCTTCCTTATGTATAAAACGCTACGCGCATCTGTTGGTCCCCCTGTCATTCTGTGGACTTTTGAAAAACTTAAAAAATAAATATAGATTAACGTGACCCCTTACGAAAAACTGAGGTGCAAAGCGACGAACCAAGCGACGAACCAAAAAAAAAGATTGATCGAGAATTTTCTGTTTTGGGTAGAATTTTCAGTTTAAATGAATACAATGCCCATCGGAACTTAAGCTTATAAATCGGAGTTGAAAAAACATTAATTTGAGCGATACTCTAGATTTTGTTCAAAATTCAGTTGTATAAAAGTTTTATT</canonical>
            <polymorphic>TTGTGGTTTGGGAGTCCGAAAAGTTCGATGAAGGGTCCATGACTTCCAGAAAACGATAAGGTTTTTTTTTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTAACAGGCGTGGAGTAAAATATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTYAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACTGACAGAAAACAGAGAGACGCAACTTAATTTATCTTCCTTATGTATAAAACGCTACGCGCATCTGTTGGTCCCCCTGTCATTCTGTGGACTTTTGAAAAACTTAAAAAATAAATATAGATTAACGTGACCCCTTACGAAAAACTGAGGTGCAAAGCGACGAACCAAGCGACGAACCAAAAAAAAAGATTGATCGAGAATTTTCTGTTTTGGGTAGAATTTTCAGTTTAAATGAATACAATGCCCATCGGAACTTAAGCTTATAAATCGGAGTTGAAAAAACATTAATTTGAGCGATACTCTAGATTTTGTTCAAAATTCAGTTGTATAAAAGTTTTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAGTAAAATATTGTTCTTTGTG</pcr_primer_p1>
		<pcr_primer_p2>CTGAAAATTCTACCCAAAACAG</pcr_primer_p2>
		<pcr_amplicon_size>447</pcr_amplicon_size>
		<canonical_amplicon>TGGAGTAAAATATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACTGACAGAAAACAGAGAGACGCAACTTAATTTATCTTCCTTATGTATAAAACGCTACGCGCATCTGTTGGTCCCCCTGTCATTCTGTGGACTTTTGAAAAACTTAAAAAATAAATATAGATTAACGTGACCCCTTACGAAAAACTGAGGTGCAAAGCGACGAACCAAGCGACGAACCAAAAAAAAAGATTGATCGAGAATTTTCTGTTTTGGGTAGAATTTTCAG</canonical_amplicon>
		<polymorphic_amplicon>TGGAGTAAAATATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTYAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACTGACAGAAAACAGAGAGACGCAACTTAATTTATCTTCCTTATGTATAAAACGCTACGCGCATCTGTTGGTCCCCCTGTCATTCTGTGGACTTTTGAAAAACTTAAAAAATAAATATAGATTAACGTGACCCCTTACGAAAAACTGAGGTGCAAAGCGACGAACCAAGCGACGAACCAAAAAAAAAGATTGATCGAGAATTTTCTGTTTTGGGTAGAATTTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19773</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>370530</contig_pos>
        <strand>+</strand>
        <context>TTYAAAAAAT[G/T]TATTATacca</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTCAAAAAAT</left_flank>
        <right_flank>TATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGGAGTCCGAAAAGTTCGATGAAGGGTCCATGACTTCCAGAAAACGATAAGGTTTTTTTTTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTAACAGGCGTGGAGTAAAATATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACTGACAGAAAACAGAGAGACGCAACTTAATTTATCTTCCTTATGTATAAAACGCTACGCGCATCTGTTGGTCCCCCTGTCATTCTGTGGACTTTTGAAAAACTTAAAAAATAAATATAGATTAACGTGACCCCTTACGAAAAACTGAGGTGCAAAGCGACGAACCAAGCGACGAACCAAAAAAAAAGATTGATCGAGAATTTTCTGTTTTGGGTAGAATTTTCAGTTTAAATGAATACAATGCCCATCGGAACTTAAGCTTATAAATCGGAGTTGAAAAAACATTAATTTGAGCGATACTCTAGATTTTGTTCAAAATTCAGTTGTATAAAAGTTTTATTTGAACATT</canonical>
            <polymorphic>TGGGAGTCCGAAAAGTTCGATGAAGGGTCCATGACTTCCAGAAAACGATAAGGTTTTTTTTTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTAACAGGCGTGGAGTAAAATATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTCAAAAAATKTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACTGACAGAAAACAGAGAGACGCAACTTAATTTATCTTCCTTATGTATAAAACGCTACGCGCATCTGTTGGTCCCCCTGTCATTCTGTGGACTTTTGAAAAACTTAAAAAATAAATATAGATTAACGTGACCCCTTACGAAAAACTGAGGTGCAAAGCGACGAACCAAGCGACGAACCAAAAAAAAAGATTGATCGAGAATTTTCTGTTTTGGGTAGAATTTTCAGTTTAAATGAATACAATGCCCATCGGAACTTAAGCTTATAAATCGGAGTTGAAAAAACATTAATTTGAGCGATACTCTAGATTTTGTTCAAAATTCAGTTGTATAAAAGTTTTATTTGAACATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>211 205 199 142 99 92 33 19</canonical_bands>
                <polymorphic_bands>341 211 205 99 92 33 19</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>170 142 97 92 69 66 59 48 44 41 33 30 26 21 19 18 15 10</canonical_bands>
                <polymorphic_bands>170 168 97 92 69 66 59 48 44 41 33 30 21 19 18 15 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGAGTAAAATATTGTTCTTTGTG</pcr_primer_p1>
		<pcr_primer_p2>CTGAAAATTCTACCCAAAACAG</pcr_primer_p2>
		<pcr_amplicon_size>447</pcr_amplicon_size>
		<canonical_amplicon>TGGAGTAAAATATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACTGACAGAAAACAGAGAGACGCAACTTAATTTATCTTCCTTATGTATAAAACGCTACGCGCATCTGTTGGTCCCCCTGTCATTCTGTGGACTTTTGAAAAACTTAAAAAATAAATATAGATTAACGTGACCCCTTACGAAAAACTGAGGTGCAAAGCGACGAACCAAGCGACGAACCAAAAAAAAAGATTGATCGAGAATTTTCTGTTTTGGGTAGAATTTTCAG</canonical_amplicon>
		<polymorphic_amplicon>TGGAGTAAAATATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTCAAAAAATKTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACTGACAGAAAACAGAGAGACGCAACTTAATTTATCTTCCTTATGTATAAAACGCTACGCGCATCTGTTGGTCCCCCTGTCATTCTGTGGACTTTTGAAAAACTTAAAAAATAAATATAGATTAACGTGACCCCTTACGAAAAACTGAGGTGCAAAGCGACGAACCAAGCGACGAACCAAAAAAAAAGATTGATCGAGAATTTTCTGTTTTGGGTAGAATTTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19774</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>371635</contig_pos>
        <strand>+</strand>
        <context>CGTGACTGTG[A/G]TGATATTCCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAACGACAAGAAGAAGAAGAAGAAGAGATTGACTAGTTGGCGTGACTGTG</left_flank>
        <right_flank>TGATATTCCGTATCAGTCGAGAGAATTATGTAATAACTTATTGTGATAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATGTTATCACTGAAACATTAAACCACATATCAAACAGAACAAAATGAAAAGTTATGAAACCAACTTCTAGAAGCAGTAAAACATTTTACTCTCTGTTCAATCTTTCTTAGACATCTTCAGACTTTTCAAAAATTTCATAATTCTTTCAGAATTTTTCCCTCATCCCCATTTCTTCTGAAAAGTGTAAAAACAGAATCTTCAAATGCCCCTGTACATATTATTGAGAATGATCCGAATAAGGACGATCAGATAGTCAAATAAAGGATCATCAACAGATATTCACACTTGAATGCACCGCCCTTCTTCACAGTCCCAAAATGAAACCCTTCGGAGGGAGAGAGAAAAAGAGACGACTTTACATTCTTGACACTGTGCCGACGACGTCTTTTTCTTCTGGTGAGTAAATCATGATAACAAATTGACAGAGGACATCCGACACACGGCCACTAACGACAAGAAGAAGAAGAAGAAGAGATTGACTAGTTGGCGTGACTGTGGTGATATTCCGTATCAGTCGAGAGAATTATGTAATAACTTATTGTGATAATGTACAATAAGGATGGCGTGTTTTTATTTTGGAAAAGTTTTATGGAAGCTTAGTACCTCGAAAGGAGCAAGAAGAGCTTGGATCTGGGAATAAAATATCGTTGAATACTTTTTAGAAGCATTCTAGTCTAAACTGTTCTAATGAAACCGTGATTTTTTAACATAGCAAATTTAAATACTGTTCCATACATTTAAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTGTTAAAAGTTATCTATTTTCCGAATATTATTGCGAAAAAATTCAAAAAAAAATCCGAAATTCCCAAAAAACGCCGTTGAAAAGGAAGAAAATTCAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCAGCGGGCGCCTTTCCTACGGGCAAATTTTCNNNNNNNNNNGGAATCCTCGTCCCCCGGCGGCACATTT</canonical>
            <polymorphic>AAATGTTATCACTGAAACATTAAACCACATATCAAACAGAACAAAATGAAAAGTTATGAAACCAACTTCTAGAAGCAGTAAAACATTTTACTCTCTGTTCAATCTTTCTTAGACATCTTCAGACTTTTCAAAAATTTCATAATTCTTTCAGAATTTTTCCCTCATCCCCATTTCTTCTGAAAAGTGTAAAAACAGAATCTTCAAATGCCCCTGTACATATTATTGAGAATGATCCGAATAAGGACGATCAGATAGTCAAATAAAGGATCATCAACAGATATTCACACTTGAATGCACCGCCCTTCTTCACAGTCCCAAAATGAAACCCTTCGGAGGGAGAGAGAAAAAGAGACGACTTTACATTCTTGACACTGTGCCGACGACGTCTTTTTCTTCTGGTGAGTAAATCATGATAACAAATTGACAGAGGACATCCGACACACGGCCACTAACGACAAGAAGAAGAAGAAGAAGAGATTGACTAGTTGGCGTGACTGTGRTGATATTCCGTATCAGTCGAGAGAATTATGTAATAACTTATTGTGATAATGTACAATAAGGATGGCGTGTTTTTATTTTGGAAAAGTTTTATGGAAGCTTAGTACCTCGAAAGGAGCAAGAAGAGCTTGGATCTGGGAATAAAATATCGTTGAATACTTTTTAGAAGCATTCTAGTCTAAACTGTTCTAATGAAACCGTGATTTTTTAACATAGCAAATTTAAATACTGTTCCATACATTTAAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTGTTAAAAGTTATCTATTTTCCGAATATTATTGCGAAAAAATTCAAAAAAAAATCCGAAATTCCCAAAAAACGCCGTTGAAAAGGAAGAAAATTCAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCAGCGGGCGCCTTTCCTACGGGCAAATTTTCNNNNNNNNNNGGAATCCTCGTCCCCCGGCGGCACATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>159 131 103 98 85 67 62 45 43 39 26 25 24 16 14 13 11 10 6 6 5 5 3 2 2</canonical_bands>
                <polymorphic_bands>159 131 103 98 85 67 62 46 45 39 26 25 24 16 14 13 11 10 6 6 5 5 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAGACGACTTTACATTCTTGA</pcr_primer_p1>
		<pcr_primer_p2>TTCCATAAAACTTTTCCAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAGACGACTTTACATTCTTGACACTGTGCCGACGACGTCTTTTTCTTCTGGTGAGTAAATCATGATAACAAATTGACAGAGGACATCCGACACACGGCCACTAACGACAAGAAGAAGAAGAAGAAGAGATTGACTAGTTGGCGTGACTGTGGTGATATTCCGTATCAGTCGAGAGAATTATGTAATAACTTATTGTGATAATGTACAATAAGGATGGCGTGTTTTTATTTTGGAAAAGTTTTATGGAA</canonical_amplicon>
		<polymorphic_amplicon>AAGAGACGACTTTACATTCTTGACACTGTGCCGACGACGTCTTTTTCTTCTGGTGAGTAAATCATGATAACAAATTGACAGAGGACATCCGACACACGGCCACTAACGACAAGAAGAAGAAGAAGAAGAGATTGACTAGTTGGCGTGACTGTGRTGATATTCCGTATCAGTCGAGAGAATTATGTAATAACTTATTGTGATAATGTACAATAAGGATGGCGTGTTTTTATTTTGGAAAAGTTTTATGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19775</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>375842</contig_pos>
        <strand>+</strand>
        <context>TTGGTAGTAT[A/G]AATGAAAAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAAATATAACTTTAAATGGTAACTTCAAATATTGACATATTGGTAGTAT</left_flank>
        <right_flank>AATGAAAAACCTAATTTTCTTCAATAATGATATTTTAGTCCAATTTTTCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTTTTTTTTTGGAATTCTTCCTACAATTTCTTTCTATAGTATTACACTATTAGCTCCCTTGATTTGTATTCAAATTTGTTTTTGGCGATTCCAATTTGCTTTTCCGAAACACTTCAAAACTATACATTAATATTATTTTCTCCACCTCATATCCTGTCTCATCCTCCTCTTCATTTATTTCTATTATTTATTCACACCTTTCCGTCACAATGCGCCAAAAACCTCTGGTGGGCGTGTCCATCGAATAGTCAGCAATGCAAAGGTGGGCGGGGCTTCTTCCGAGAAAGGAACAAACACGGGCGGTACCAAGAGGACTCATCCCCTCTGTAGCTAGGTGTTATTCTGAAGAAATATGACATCTTTCCCGTTTCTTATGACTCCCGAGTCGATTAACAAATTGGTTATGCCTAATTCTGCGAGGTAATTTTTCGCAAAAAAACTATTTCACAAATATAACTTTAAATGGTAACTTCAAATATTGACATATTGGTAGTATGAATGAAAAACCTAATTTTCTTCAATAATGATATTTTAGTCCAATTTTTCTCTGAAGCTTCCAAAAAGTAAAAACACCAATCACTACATCGACATACAGAAATAAGTTCTTTTTGAATCCTCGAAACAGTGATAATTTACTTATTTATATTTTTTCGAAAATGTTTGGTAGAGTGTTTAAAAACCCGGTCAAAACGGAGGTTCCGAAAATCAGACGACTCAAAAATCTCTATCAAAATATACAACTTCTGATTCCAGTATATCGTCGTCCTCCTCATCTCCTTCCACATCCACTTCATTTTCCATTGACACATTGCTCTCCAACCCCTTGGCTGCTCTTCCACAACTCCAATCACAGAATTTTCAAGATCCATTCGGATCTTTAAATGTTCCACCTGGCACTGCTTCTTCAATGCCATGGCAGTTCCATGCAGCGTCTTATCCATTTTTTTGTAAGTTTTACCTTTTCACTGTTTCGTTTGGGTCATGAGTATTTTGGCAG</canonical>
            <polymorphic>CAATTTTTTTTTTGGAATTCTTCCTACAATTTCTTTCTATAGTATTACACTATTAGCTCCCTTGATTTGTATTCAAATTTGTTTTTGGCGATTCCAATTTGCTTTTCCGAAACACTTCAAAACTATACATTAATATTATTTTCTCCACCTCATATCCTGTCTCATCCTCCTCTTCATTTATTTCTATTATTTATTCACACCTTTCCGTCACAATGCGCCAAAAACCTCTGGTGGGCGTGTCCATCGAATAGTCAGCAATGCAAAGGTGGGCGGGGCTTCTTCCGAGAAAGGAACAAACACGGGCGGTACCAAGAGGACTCATCCCCTCTGTAGCTAGGTGTTATTCTGAAGAAATATGACATCTTTCCCGTTTCTTATGACTCCCGAGTCGATTAACAAATTGGTTATGCCTAATTCTGCGAGGTAATTTTTCGCAAAAAAACTATTTCACAAATATAACTTTAAATGGTAACTTCAAATATTGACATATTGGTAGTATRAATGAAAAACCTAATTTTCTTCAATAATGATATTTTAGTCCAATTTTTCTCTGAAGCTTCCAAAAAGTAAAAACACCAATCACTACATCGACATACAGAAATAAGTTCTTTTTGAATCCTCGAAACAGTGATAATTTACTTATTTATATTTTTTCGAAAATGTTTGGTAGAGTGTTTAAAAACCCGGTCAAAACGGAGGTTCCGAAAATCAGACGACTCAAAAATCTCTATCAAAATATACAACTTCTGATTCCAGTATATCGTCGTCCTCCTCATCTCCTTCCACATCCACTTCATTTTCCATTGACACATTGCTCTCCAACCCCTTGGCTGCTCTTCCACAACTCCAATCACAGAATTTTCAAGATCCATTCGGATCTTTAAATGTTCCACCTGGCACTGCTTCTTCAATGCCATGGCAGTTCCATGCAGCGTCTTATCCATTTTTTTGTAAGTTTTACCTTTTCACTGTTTCGTTTGGGTCATGAGTATTTTGGCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATGACATCTTTCCCGTTTC</pcr_primer_p1>
		<pcr_primer_p2>TCTGTATGTCGATGTAGTGATTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATATGACATCTTTCCCGTTTCTTATGACTCCCGAGTCGATTAACAAATTGGTTATGCCTAATTCTGCGAGGTAATTTTTCGCAAAAAAACTATTTCACAAATATAACTTTAAATGGTAACTTCAAATATTGACATATTGGTAGTATGAATGAAAAACCTAATTTTCTTCAATAATGATATTTTAGTCCAATTTTTCTCTGAAGCTTCCAAAAAGTAAAAACACCAATCACTACATCGACATACAGA</canonical_amplicon>
		<polymorphic_amplicon>ATATGACATCTTTCCCGTTTCTTATGACTCCCGAGTCGATTAACAAATTGGTTATGCCTAATTCTGCGAGGTAATTTTTCGCAAAAAAACTATTTCACAAATATAACTTTAAATGGTAACTTCAAATATTGACATATTGGTAGTATRAATGAAAAACCTAATTTTCTTCAATAATGATATTTTAGTCCAATTTTTCTCTGAAGCTTCCAAAAAGTAAAAACACCAATCACTACATCGACATACAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19776</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>375980</contig_pos>
        <strand>+</strand>
        <context>GTGATAATTT[A/T]CTTAYTTATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGACATACAGAAATAAGTTCTTTTTGAATCCTCGAAACAGTGATAATTT</left_flank>
        <right_flank>CTTATTTATATTTTTTCGAAAATGTTTGGTAGAGTGTTTAAAAACCCGGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCTCCACCTCATATCCTGTCTCATCCTCCTCTTCATTTATTTCTATTATTTATTCACACCTTTCCGTCACAATGCGCCAAAAACCTCTGGTGGGCGTGTCCATCGAATAGTCAGCAATGCAAAGGTGGGCGGGGCTTCTTCCGAGAAAGGAACAAACACGGGCGGTACCAAGAGGACTCATCCCCTCTGTAGCTAGGTGTTATTCTGAAGAAATATGACATCTTTCCCGTTTCTTATGACTCCCGAGTCGATTAACAAATTGGTTATGCCTAATTCTGCGAGGTAATTTTTCGCAAAAAAACTATTTCACAAATATAACTTTAAATGGTAACTTCAAATATTGACATATTGGTAGTATGAATGAAAAACCTAATTTTCTTCAATAATGATATTTTAGTCCAATTTTTCTCTGAAGCTTCCAAAAAGTAAAAACACCAATCACTACATCGACATACAGAAATAAGTTCTTTTTGAATCCTCGAAACAGTGATAATTTACTTATTTATATTTTTTCGAAAATGTTTGGTAGAGTGTTTAAAAACCCGGTCAAAACGGAGGTTCCGAAAATCAGACGACTCAAAAATCTCTATCAAAATATACAACTTCTGATTCCAGTATATCGTCGTCCTCCTCATCTCCTTCCACATCCACTTCATTTTCCATTGACACATTGCTCTCCAACCCCTTGGCTGCTCTTCCACAACTCCAATCACAGAATTTTCAAGATCCATTCGGATCTTTAAATGTTCCACCTGGCACTGCTTCTTCAATGCCATGGCAGTTCCATGCAGCGTCTTATCCATTTTTTTGTAAGTTTTACCTTTTCACTGTTTCGTTTGGGTCATGAGTATTTTGGCAGGCTGATTTTCTAATTTGCTCGTCCCACCTTTTTGGAATCTCGATTTTGAAAAAGTCAAATTTTGAGCACATCGTTTAGTTTTCAGAAAATTTTCAACAATTACTGTAAAACCTGTAACAGAAGGGCCCCTAACTTAAC</canonical>
            <polymorphic>TTTTCTCCACCTCATATCCTGTCTCATCCTCCTCTTCATTTATTTCTATTATTTATTCACACCTTTCCGTCACAATGCGCCAAAAACCTCTGGTGGGCGTGTCCATCGAATAGTCAGCAATGCAAAGGTGGGCGGGGCTTCTTCCGAGAAAGGAACAAACACGGGCGGTACCAAGAGGACTCATCCCCTCTGTAGCTAGGTGTTATTCTGAAGAAATATGACATCTTTCCCGTTTCTTATGACTCCCGAGTCGATTAACAAATTGGTTATGCCTAATTCTGCGAGGTAATTTTTCGCAAAAAAACTATTTCACAAATATAACTTTAAATGGTAACTTCAAATATTGACATATTGGTAGTATGAATGAAAAACCTAATTTTCTTCAATAATGATATTTTAGTCCAATTTTTCTCTGAAGCTTCCAAAAAGTAAAAACACCAATCACTACATCGACATACAGAAATAAGTTCTTTTTGAATCCTCGAAACAGTGATAATTTWCTTATTTATATTTTTTCGAAAATGTTTGGTAGAGTGTTTAAAAACCCGGTCAAAACGGAGGTTCCGAAAATCAGACGACTCAAAAATCTCTATCAAAATATACAACTTCTGATTCCAGTATATCGTCGTCCTCCTCATCTCCTTCCACATCCACTTCATTTTCCATTGACACATTGCTCTCCAACCCCTTGGCTGCTCTTCCACAACTCCAATCACAGAATTTTCAAGATCCATTCGGATCTTTAAATGTTCCACCTGGCACTGCTTCTTCAATGCCATGGCAGTTCCATGCAGCGTCTTATCCATTTTTTTGTAAGTTTTACCTTTTCACTGTTTCGTTTGGGTCATGAGTATTTTGGCAGGCTGATTTTCTAATTTGCTCGTCCCACCTTTTTGGAATCTCGATTTTGAAAAAGTCAAATTTTGAGCACATCGTTTAGTTTTCAGAAAATTTTCAACAATTACTGTAAAACCTGTAACAGAAGGGCCCCTAACTTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAAGTAAAAACACCAATCAC</pcr_primer_p1>
		<pcr_primer_p2>GTGTCAATGGAAAATGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAAAGTAAAAACACCAATCACTACATCGACATACAGAAATAAGTTCTTTTTGAATCCTCGAAACAGTGATAATTTACTTATTTATATTTTTTCGAAAATGTTTGGTAGAGTGTTTAAAAACCCGGTCAAAACGGAGGTTCCGAAAATCAGACGACTCAAAAATCTCTATCAAAATATACAACTTCTGATTCCAGTATATCGTCGTCCTCCTCATCTCCTTCCACATCCACTTCATTTTCCATTGACAC</canonical_amplicon>
		<polymorphic_amplicon>CAAAAAGTAAAAACACCAATCACTACATCGACATACAGAAATAAGTTCTTTTTGAATCCTCGAAACAGTGATAATTTWCTTATTTATATTTTTTCGAAAATGTTTGGTAGAGTGTTTAAAAACCCGGTCAAAACGGAGGTTCCGAAAATCAGACGACTCAAAAATCTCTATCAAAATATACAACTTCTGATTCCAGTATATCGTCGTCCTCCTCATCTCCTTCCACATCCACTTCATTTTCCATTGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19777</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>375985</contig_pos>
        <strand>+</strand>
        <context>AATTTWCTTA[C/T]TTATATTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATACAGAAATAAGTTCTTTTTGAATCCTCGAAACAGTGATAATTTACTTA</left_flank>
        <right_flank>TTATATTTTTTCGAAAATGTTTGGTAGAGTGTTTAAAAACCCGGTCAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCACCTCATATCCTGTCTCATCCTCCTCTTCATTTATTTCTATTATTTATTCACACCTTTCCGTCACAATGCGCCAAAAACCTCTGGTGGGCGTGTCCATCGAATAGTCAGCAATGCAAAGGTGGGCGGGGCTTCTTCCGAGAAAGGAACAAACACGGGCGGTACCAAGAGGACTCATCCCCTCTGTAGCTAGGTGTTATTCTGAAGAAATATGACATCTTTCCCGTTTCTTATGACTCCCGAGTCGATTAACAAATTGGTTATGCCTAATTCTGCGAGGTAATTTTTCGCAAAAAAACTATTTCACAAATATAACTTTAAATGGTAACTTCAAATATTGACATATTGGTAGTATGAATGAAAAACCTAATTTTCTTCAATAATGATATTTTAGTCCAATTTTTCTCTGAAGCTTCCAAAAAGTAAAAACACCAATCACTACATCGACATACAGAAATAAGTTCTTTTTGAATCCTCGAAACAGTGATAATTTACTTATTTATATTTTTTCGAAAATGTTTGGTAGAGTGTTTAAAAACCCGGTCAAAACGGAGGTTCCGAAAATCAGACGACTCAAAAATCTCTATCAAAATATACAACTTCTGATTCCAGTATATCGTCGTCCTCCTCATCTCCTTCCACATCCACTTCATTTTCCATTGACACATTGCTCTCCAACCCCTTGGCTGCTCTTCCACAACTCCAATCACAGAATTTTCAAGATCCATTCGGATCTTTAAATGTTCCACCTGGCACTGCTTCTTCAATGCCATGGCAGTTCCATGCAGCGTCTTATCCATTTTTTTGTAAGTTTTACCTTTTCACTGTTTCGTTTGGGTCATGAGTATTTTGGCAGGCTGATTTTCTAATTTGCTCGTCCCACCTTTTTGGAATCTCGATTTTGAAAAAGTCAAATTTTGAGCACATCGTTTAGTTTTCAGAAAATTTTCAACAATTACTGTAAAACCTGTAACAGAAGGGCCCCTAACTTAACTGTAA</canonical>
            <polymorphic>TCCACCTCATATCCTGTCTCATCCTCCTCTTCATTTATTTCTATTATTTATTCACACCTTTCCGTCACAATGCGCCAAAAACCTCTGGTGGGCGTGTCCATCGAATAGTCAGCAATGCAAAGGTGGGCGGGGCTTCTTCCGAGAAAGGAACAAACACGGGCGGTACCAAGAGGACTCATCCCCTCTGTAGCTAGGTGTTATTCTGAAGAAATATGACATCTTTCCCGTTTCTTATGACTCCCGAGTCGATTAACAAATTGGTTATGCCTAATTCTGCGAGGTAATTTTTCGCAAAAAAACTATTTCACAAATATAACTTTAAATGGTAACTTCAAATATTGACATATTGGTAGTATGAATGAAAAACCTAATTTTCTTCAATAATGATATTTTAGTCCAATTTTTCTCTGAAGCTTCCAAAAAGTAAAAACACCAATCACTACATCGACATACAGAAATAAGTTCTTTTTGAATCCTCGAAACAGTGATAATTTACTTAYTTATATTTTTTCGAAAATGTTTGGTAGAGTGTTTAAAAACCCGGTCAAAACGGAGGTTCCGAAAATCAGACGACTCAAAAATCTCTATCAAAATATACAACTTCTGATTCCAGTATATCGTCGTCCTCCTCATCTCCTTCCACATCCACTTCATTTTCCATTGACACATTGCTCTCCAACCCCTTGGCTGCTCTTCCACAACTCCAATCACAGAATTTTCAAGATCCATTCGGATCTTTAAATGTTCCACCTGGCACTGCTTCTTCAATGCCATGGCAGTTCCATGCAGCGTCTTATCCATTTTTTTGTAAGTTTTACCTTTTCACTGTTTCGTTTGGGTCATGAGTATTTTGGCAGGCTGATTTTCTAATTTGCTCGTCCCACCTTTTTGGAATCTCGATTTTGAAAAAGTCAAATTTTGAGCACATCGTTTAGTTTTCAGAAAATTTTCAACAATTACTGTAAAACCTGTAACAGAAGGGCCCCTAACTTAACTGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAAGTAAAAACACCAATCAC</pcr_primer_p1>
		<pcr_primer_p2>GTGTCAATGGAAAATGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAAAGTAAAAACACCAATCACTACATCGACATACAGAAATAAGTTCTTTTTGAATCCTCGAAACAGTGATAATTTACTTATTTATATTTTTTCGAAAATGTTTGGTAGAGTGTTTAAAAACCCGGTCAAAACGGAGGTTCCGAAAATCAGACGACTCAAAAATCTCTATCAAAATATACAACTTCTGATTCCAGTATATCGTCGTCCTCCTCATCTCCTTCCACATCCACTTCATTTTCCATTGACAC</canonical_amplicon>
		<polymorphic_amplicon>CAAAAAGTAAAAACACCAATCACTACATCGACATACAGAAATAAGTTCTTTTTGAATCCTCGAAACAGTGATAATTTACTTAYTTATATTTTTTCGAAAATGTTTGGTAGAGTGTTTAAAAACCCGGTCAAAACGGAGGTTCCGAAAATCAGACGACTCAAAAATCTCTATCAAAATATACAACTTCTGATTCCAGTATATCGTCGTCCTCCTCATCTCCTTCCACATCCACTTCATTTTCCATTGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19778</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>376020</contig_pos>
        <strand>+</strand>
        <context>TAGAGTGTTT[A/G]AAAACCCGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGATAATTTACTTATTTATATTTTTTCGAAAATGTTTGGTAGAGTGTTT</left_flank>
        <right_flank>AAAACCCGGTCAAAACGGAGGTTCCGAAAATCAGACGACTCAAAAATCTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTCTATTATTTATTCACACCTTTCCGTCACAATGCGCCAAAAACCTCTGGTGGGCGTGTCCATCGAATAGTCAGCAATGCAAAGGTGGGCGGGGCTTCTTCCGAGAAAGGAACAAACACGGGCGGTACCAAGAGGACTCATCCCCTCTGTAGCTAGGTGTTATTCTGAAGAAATATGACATCTTTCCCGTTTCTTATGACTCCCGAGTCGATTAACAAATTGGTTATGCCTAATTCTGCGAGGTAATTTTTCGCAAAAAAACTATTTCACAAATATAACTTTAAATGGTAACTTCAAATATTGACATATTGGTAGTATGAATGAAAAACCTAATTTTCTTCAATAATGATATTTTAGTCCAATTTTTCTCTGAAGCTTCCAAAAAGTAAAAACACCAATCACTACATCGACATACAGAAATAAGTTCTTTTTGAATCCTCGAAACAGTGATAATTTACTTATTTATATTTTTTCGAAAATGTTTGGTAGAGTGTTTAAAAACCCGGTCAAAACGGAGGTTCCGAAAATCAGACGACTCAAAAATCTCTATCAAAATATACAACTTCTGATTCCAGTATATCGTCGTCCTCCTCATCTCCTTCCACATCCACTTCATTTTCCATTGACACATTGCTCTCCAACCCCTTGGCTGCTCTTCCACAACTCCAATCACAGAATTTTCAAGATCCATTCGGATCTTTAAATGTTCCACCTGGCACTGCTTCTTCAATGCCATGGCAGTTCCATGCAGCGTCTTATCCATTTTTTTGTAAGTTTTACCTTTTCACTGTTTCGTTTGGGTCATGAGTATTTTGGCAGGCTGATTTTCTAATTTGCTCGTCCCACCTTTTTGGAATCTCGATTTTGAAAAAGTCAAATTTTGAGCACATCGTTTAGTTTTCAGAAAATTTTCAACAATTACTGTAAAACCTGTAACAGAAGGGCCCCTAACTTAACTGTAAGTTAATTTTTCTCAGTCCCTGTCAACGATATCAAA</canonical>
            <polymorphic>TATTTCTATTATTTATTCACACCTTTCCGTCACAATGCGCCAAAAACCTCTGGTGGGCGTGTCCATCGAATAGTCAGCAATGCAAAGGTGGGCGGGGCTTCTTCCGAGAAAGGAACAAACACGGGCGGTACCAAGAGGACTCATCCCCTCTGTAGCTAGGTGTTATTCTGAAGAAATATGACATCTTTCCCGTTTCTTATGACTCCCGAGTCGATTAACAAATTGGTTATGCCTAATTCTGCGAGGTAATTTTTCGCAAAAAAACTATTTCACAAATATAACTTTAAATGGTAACTTCAAATATTGACATATTGGTAGTATGAATGAAAAACCTAATTTTCTTCAATAATGATATTTTAGTCCAATTTTTCTCTGAAGCTTCCAAAAAGTAAAAACACCAATCACTACATCGACATACAGAAATAAGTTCTTTTTGAATCCTCGAAACAGTGATAATTTACTTATTTATATTTTTTCGAAAATGTTTGGTAGAGTGTTTRAAAACCCGGTCAAAACGGAGGTTCCGAAAATCAGACGACTCAAAAATCTCTATCAAAATATACAACTTCTGATTCCAGTATATCGTCGTCCTCCTCATCTCCTTCCACATCCACTTCATTTTCCATTGACACATTGCTCTCCAACCCCTTGGCTGCTCTTCCACAACTCCAATCACAGAATTTTCAAGATCCATTCGGATCTTTAAATGTTCCACCTGGCACTGCTTCTTCAATGCCATGGCAGTTCCATGCAGCGTCTTATCCATTTTTTTGTAAGTTTTACCTTTTCACTGTTTCGTTTGGGTCATGAGTATTTTGGCAGGCTGATTTTCTAATTTGCTCGTCCCACCTTTTTGGAATCTCGATTTTGAAAAAGTCAAATTTTGAGCACATCGTTTAGTTTTCAGAAAATTTTCAACAATTACTGTAAAACCTGTAACAGAAGGGCCCCTAACTTAACTGTAAGTTAATTTTTCTCAGTCCCTGTCAACGATATCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>296 285 214 205</canonical_bands>
                <polymorphic_bands>419 296 285</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>253 215 214 205 69 33 11</canonical_bands>
                <polymorphic_bands>419 253 215 69 33 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAAGTAAAAACACCAATCAC</pcr_primer_p1>
		<pcr_primer_p2>GTGTCAATGGAAAATGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAAAGTAAAAACACCAATCACTACATCGACATACAGAAATAAGTTCTTTTTGAATCCTCGAAACAGTGATAATTTACTTATTTATATTTTTTCGAAAATGTTTGGTAGAGTGTTTAAAAACCCGGTCAAAACGGAGGTTCCGAAAATCAGACGACTCAAAAATCTCTATCAAAATATACAACTTCTGATTCCAGTATATCGTCGTCCTCCTCATCTCCTTCCACATCCACTTCATTTTCCATTGACAC</canonical_amplicon>
		<polymorphic_amplicon>CAAAAAGTAAAAACACCAATCACTACATCGACATACAGAAATAAGTTCTTTTTGAATCCTCGAAACAGTGATAATTTACTTATTTATATTTTTTCGAAAATGTTTGGTAGAGTGTTTRAAAACCCGGTCAAAACGGAGGTTCCGAAAATCAGACGACTCAAAAATCTCTATCAAAATATACAACTTCTGATTCCAGTATATCGTCGTCCTCCTCATCTCCTTCCACATCCACTTCATTTTCCATTGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19779</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>376081</contig_pos>
        <strand>+</strand>
        <context>TATCAAAATA[C/T]ACAACTTCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAAACGGAGGTTCCGAAAATCAGACGACTCAAAAATCTCTATCAAAATA</left_flank>
        <right_flank>ACAACTTCTGATTCCAGTATATCGTCGTCCTCCTCATCTCCTTCCACATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCATCGAATAGTCAGCAATGCAAAGGTGGGCGGGGCTTCTTCCGAGAAAGGAACAAACACGGGCGGTACCAAGAGGACTCATCCCCTCTGTAGCTAGGTGTTATTCTGAAGAAATATGACATCTTTCCCGTTTCTTATGACTCCCGAGTCGATTAACAAATTGGTTATGCCTAATTCTGCGAGGTAATTTTTCGCAAAAAAACTATTTCACAAATATAACTTTAAATGGTAACTTCAAATATTGACATATTGGTAGTATGAATGAAAAACCTAATTTTCTTCAATAATGATATTTTAGTCCAATTTTTCTCTGAAGCTTCCAAAAAGTAAAAACACCAATCACTACATCGACATACAGAAATAAGTTCTTTTTGAATCCTCGAAACAGTGATAATTTACTTATTTATATTTTTTCGAAAATGTTTGGTAGAGTGTTTAAAAACCCGGTCAAAACGGAGGTTCCGAAAATCAGACGACTCAAAAATCTCTATCAAAATATACAACTTCTGATTCCAGTATATCGTCGTCCTCCTCATCTCCTTCCACATCCACTTCATTTTCCATTGACACATTGCTCTCCAACCCCTTGGCTGCTCTTCCACAACTCCAATCACAGAATTTTCAAGATCCATTCGGATCTTTAAATGTTCCACCTGGCACTGCTTCTTCAATGCCATGGCAGTTCCATGCAGCGTCTTATCCATTTTTTTGTAAGTTTTACCTTTTCACTGTTTCGTTTGGGTCATGAGTATTTTGGCAGGCTGATTTTCTAATTTGCTCGTCCCACCTTTTTGGAATCTCGATTTTGAAAAAGTCAAATTTTGAGCACATCGTTTAGTTTTCAGAAAATTTTCAACAATTACTGTAAAACCTGTAACAGAAGGGCCCCTAACTTAACTGTAAGTTAATTTTTCTCAGTCCCTGTCAACGATATCAAAAAGTTGCCAGCTGGTAAATTGTTTATCATGATATCAGGAGGGATTTGTCAGTTGACAGATT</canonical>
            <polymorphic>TCCATCGAATAGTCAGCAATGCAAAGGTGGGCGGGGCTTCTTCCGAGAAAGGAACAAACACGGGCGGTACCAAGAGGACTCATCCCCTCTGTAGCTAGGTGTTATTCTGAAGAAATATGACATCTTTCCCGTTTCTTATGACTCCCGAGTCGATTAACAAATTGGTTATGCCTAATTCTGCGAGGTAATTTTTCGCAAAAAAACTATTTCACAAATATAACTTTAAATGGTAACTTCAAATATTGACATATTGGTAGTATGAATGAAAAACCTAATTTTCTTCAATAATGATATTTTAGTCCAATTTTTCTCTGAAGCTTCCAAAAAGTAAAAACACCAATCACTACATCGACATACAGAAATAAGTTCTTTTTGAATCCTCGAAACAGTGATAATTTACTTATTTATATTTTTTCGAAAATGTTTGGTAGAGTGTTTAAAAACCCGGTCAAAACGGAGGTTCCGAAAATCAGACGACTCAAAAATCTCTATCAAAATAYACAACTTCTGATTCCAGTATATCGTCGTCCTCCTCATCTCCTTCCACATCCACTTCATTTTCCATTGACACATTGCTCTCCAACCCCTTGGCTGCTCTTCCACAACTCCAATCACAGAATTTTCAAGATCCATTCGGATCTTTAAATGTTCCACCTGGCACTGCTTCTTCAATGCCATGGCAGTTCCATGCAGCGTCTTATCCATTTTTTTGTAAGTTTTACCTTTTCACTGTTTCGTTTGGGTCATGAGTATTTTGGCAGGCTGATTTTCTAATTTGCTCGTCCCACCTTTTTGGAATCTCGATTTTGAAAAAGTCAAATTTTGAGCACATCGTTTAGTTTTCAGAAAATTTTCAACAATTACTGTAAAACCTGTAACAGAAGGGCCCCTAACTTAACTGTAAGTTAATTTTTCTCAGTCCCTGTCAACGATATCAAAAAGTTGCCAGCTGGTAAATTGTTTATCATGATATCAGGAGGGATTTGTCAGTTGACAGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAAGTAAAAACACCAATCAC</pcr_primer_p1>
		<pcr_primer_p2>GTGTCAATGGAAAATGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAAAGTAAAAACACCAATCACTACATCGACATACAGAAATAAGTTCTTTTTGAATCCTCGAAACAGTGATAATTTACTTATTTATATTTTTTCGAAAATGTTTGGTAGAGTGTTTAAAAACCCGGTCAAAACGGAGGTTCCGAAAATCAGACGACTCAAAAATCTCTATCAAAATATACAACTTCTGATTCCAGTATATCGTCGTCCTCCTCATCTCCTTCCACATCCACTTCATTTTCCATTGACAC</canonical_amplicon>
		<polymorphic_amplicon>CAAAAAGTAAAAACACCAATCACTACATCGACATACAGAAATAAGTTCTTTTTGAATCCTCGAAACAGTGATAATTTACTTATTTATATTTTTTCGAAAATGTTTGGTAGAGTGTTTAAAAACCCGGTCAAAACGGAGGTTCCGAAAATCAGACGACTCAAAAATCTCTATCAAAATAYACAACTTCTGATTCCAGTATATCGTCGTCCTCCTCATCTCCTTCCACATCCACTTCATTTTCCATTGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19780</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>376308</contig_pos>
        <strand>+</strand>
        <context>TTTTACCTTT[A/T]CACTGTTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGGCAGTTCCATGCAGCGTCTTATCCATTTTTTTGTAAGTTTTACCTTT</left_flank>
        <right_flank>CACTGTTTCGTTTGGGTCATGAGTATTTTGGCAGGCTGATTTTCTAATTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTAACTTCAAATATTGACATATTGGTAGTATGAATGAAAAACCTAATTTTCTTCAATAATGATATTTTAGTCCAATTTTTCTCTGAAGCTTCCAAAAAGTAAAAACACCAATCACTACATCGACATACAGAAATAAGTTCTTTTTGAATCCTCGAAACAGTGATAATTTACTTATTTATATTTTTTCGAAAATGTTTGGTAGAGTGTTTAAAAACCCGGTCAAAACGGAGGTTCCGAAAATCAGACGACTCAAAAATCTCTATCAAAATATACAACTTCTGATTCCAGTATATCGTCGTCCTCCTCATCTCCTTCCACATCCACTTCATTTTCCATTGACACATTGCTCTCCAACCCCTTGGCTGCTCTTCCACAACTCCAATCACAGAATTTTCAAGATCCATTCGGATCTTTAAATGTTCCACCTGGCACTGCTTCTTCAATGCCATGGCAGTTCCATGCAGCGTCTTATCCATTTTTTTGTAAGTTTTACCTTTTCACTGTTTCGTTTGGGTCATGAGTATTTTGGCAGGCTGATTTTCTAATTTGCTCGTCCCACCTTTTTGGAATCTCGATTTTGAAAAAGTCAAATTTTGAGCACATCGTTTAGTTTTCAGAAAATTTTCAACAATTACTGTAAAACCTGTAACAGAAGGGCCCCTAACTTAACTGTAAGTTAATTTTTCTCAGTCCCTGTCAACGATATCAAAAAGTTGCCAGCTGGTAAATTGTTTATCATGATATCAGGAGGGATTTGTCAGTTGACAGATTTTTGATATCTTGCATAGAAATGGAGATAAATGAGCTCAAACGTTTAAGGGCCCTTCTATCACAGCTTTCACGATATTAACCAAAAATATTACCTGAATTTCTCTTACCCATTGGACCAACAGGCCTAGTAAATTATCAAAAAAAAATGAGTTAAATCGTATGTACCAATGAAAATTTAGATTGGTGTCATACACTAATTTAAAAAAAAATCGCCGTTTCATAGAAAC</canonical>
            <polymorphic>TGGTAACTTCAAATATTGACATATTGGTAGTATGAATGAAAAACCTAATTTTCTTCAATAATGATATTTTAGTCCAATTTTTCTCTGAAGCTTCCAAAAAGTAAAAACACCAATCACTACATCGACATACAGAAATAAGTTCTTTTTGAATCCTCGAAACAGTGATAATTTACTTATTTATATTTTTTCGAAAATGTTTGGTAGAGTGTTTAAAAACCCGGTCAAAACGGAGGTTCCGAAAATCAGACGACTCAAAAATCTCTATCAAAATATACAACTTCTGATTCCAGTATATCGTCGTCCTCCTCATCTCCTTCCACATCCACTTCATTTTCCATTGACACATTGCTCTCCAACCCCTTGGCTGCTCTTCCACAACTCCAATCACAGAATTTTCAAGATCCATTCGGATCTTTAAATGTTCCACCTGGCACTGCTTCTTCAATGCCATGGCAGTTCCATGCAGCGTCTTATCCATTTTTTTGTAAGTTTTACCTTTWCACTGTTTCGTTTGGGTCATGAGTATTTTGGCAGGCTGATTTTCTAATTTGCTCGTCCCACCTTTTTGGAATCTCGATTTTGAAAAAGTCAAATTTTGAGCACATCGTTTAGTTTTCAGAAAATTTTCAACAATTACTGTAAAACCTGTAACAGAAGGGCCCCTAACTTAACTGTAAGTTAATTTTTCTCAGTCCCTGTCAACGATATCAAAAAGTTGCCAGCTGGTAAATTGTTTATCATGATATCAGGAGGGATTTGTCAGTTGACAGATTTTTGATATCTTGCATAGAAATGGAGATAAATGAGCTCAAACGTTTAAGGGCCCTTCTATCACAGCTTTCACGATATTAACCAAAAATATTACCTGAATTTCTCTTACCCATTGGACCAACAGGCCTAGTAAATTATCAAAAAAAAATGAGTTAAATCGTATGTACCAATGAAAATTTAGATTGGTGTCATACACTAATTTAAAAAAAAATCGCCGTTTCATAGAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTCCTTCCACATCCACTT</pcr_primer_p1>
		<pcr_primer_p2>GACGAGCAAATTAGAAAATCAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCTCCTTCCACATCCACTTCATTTTCCATTGACACATTGCTCTCCAACCCCTTGGCTGCTCTTCCACAACTCCAATCACAGAATTTTCAAGATCCATTCGGATCTTTAAATGTTCCACCTGGCACTGCTTCTTCAATGCCATGGCAGTTCCATGCAGCGTCTTATCCATTTTTTTGTAAGTTTTACCTTTTCACTGTTTCGTTTGGGTCATGAGTATTTTGGCAGGCTGATTTTCTAATTTGCTCGTC</canonical_amplicon>
		<polymorphic_amplicon>ATCTCCTTCCACATCCACTTCATTTTCCATTGACACATTGCTCTCCAACCCCTTGGCTGCTCTTCCACAACTCCAATCACAGAATTTTCAAGATCCATTCGGATCTTTAAATGTTCCACCTGGCACTGCTTCTTCAATGCCATGGCAGTTCCATGCAGCGTCTTATCCATTTTTTTGTAAGTTTTACCTTTWCACTGTTTCGTTTGGGTCATGAGTATTTTGGCAGGCTGATTTTCTAATTTGCTCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19781</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>376415</contig_pos>
        <strand>+</strand>
        <context>TGAGCACATC[A/G]TTTAGTTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCACCTTTTTGGAATCTCGATTTTGAAAAAGTCAAATTTTGAGCACATC</left_flank>
        <right_flank>TTTAGTTTTCAGAAAATTTTCAACAATTACTGTAAAACCTGTAACAGAAG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACCAATCACTACATCGACATACAGAAATAAGTTCTTTTTGAATCCTCGAAACAGTGATAATTTACTTATTTATATTTTTTCGAAAATGTTTGGTAGAGTGTTTAAAAACCCGGTCAAAACGGAGGTTCCGAAAATCAGACGACTCAAAAATCTCTATCAAAATATACAACTTCTGATTCCAGTATATCGTCGTCCTCCTCATCTCCTTCCACATCCACTTCATTTTCCATTGACACATTGCTCTCCAACCCCTTGGCTGCTCTTCCACAACTCCAATCACAGAATTTTCAAGATCCATTCGGATCTTTAAATGTTCCACCTGGCACTGCTTCTTCAATGCCATGGCAGTTCCATGCAGCGTCTTATCCATTTTTTTGTAAGTTTTACCTTTTCACTGTTTCGTTTGGGTCATGAGTATTTTGGCAGGCTGATTTTCTAATTTGCTCGTCCCACCTTTTTGGAATCTCGATTTTGAAAAAGTCAAATTTTGAGCACATCGTTTAGTTTTCAGAAAATTTTCAACAATTACTGTAAAACCTGTAACAGAAGGGCCCCTAACTTAACTGTAAGTTAATTTTTCTCAGTCCCTGTCAACGATATCAAAAAGTTGCCAGCTGGTAAATTGTTTATCATGATATCAGGAGGGATTTGTCAGTTGACAGATTTTTGATATCTTGCATAGAAATGGAGATAAATGAGCTCAAACGTTTAAGGGCCCTTCTATCACAGCTTTCACGATATTAACCAAAAATATTACCTGAATTTCTCTTACCCATTGGACCAACAGGCCTAGTAAATTATCAAAAAAAAATGAGTTAAATCGTATGTACCAATGAAAATTTAGATTGGTGTCATACACTAATTTAAAAAAAAATCGCCGTTTCATAGAAACTTTTTTTGATGTCCCACTGCATTCCTTGAATGACTTTTTCAACAATGTTGAGTTCTTTCCTTTCTTTGACTAAATTGTCTCAAATTTGCATTTTTCTCGGTTTCAAT</canonical>
            <polymorphic>CACCAATCACTACATCGACATACAGAAATAAGTTCTTTTTGAATCCTCGAAACAGTGATAATTTACTTATTTATATTTTTTCGAAAATGTTTGGTAGAGTGTTTAAAAACCCGGTCAAAACGGAGGTTCCGAAAATCAGACGACTCAAAAATCTCTATCAAAATATACAACTTCTGATTCCAGTATATCGTCGTCCTCCTCATCTCCTTCCACATCCACTTCATTTTCCATTGACACATTGCTCTCCAACCCCTTGGCTGCTCTTCCACAACTCCAATCACAGAATTTTCAAGATCCATTCGGATCTTTAAATGTTCCACCTGGCACTGCTTCTTCAATGCCATGGCAGTTCCATGCAGCGTCTTATCCATTTTTTTGTAAGTTTTACCTTTTCACTGTTTCGTTTGGGTCATGAGTATTTTGGCAGGCTGATTTTCTAATTTGCTCGTCCCACCTTTTTGGAATCTCGATTTTGAAAAAGTCAAATTTTGAGCACATCRTTTAGTTTTCAGAAAATTTTCAACAATTACTGTAAAACCTGTAACAGAAGGGCCCCTAACTTAACTGTAAGTTAATTTTTCTCAGTCCCTGTCAACGATATCAAAAAGTTGCCAGCTGGTAAATTGTTTATCATGATATCAGGAGGGATTTGTCAGTTGACAGATTTTTGATATCTTGCATAGAAATGGAGATAAATGAGCTCAAACGTTTAAGGGCCCTTCTATCACAGCTTTCACGATATTAACCAAAAATATTACCTGAATTTCTCTTACCCATTGGACCAACAGGCCTAGTAAATTATCAAAAAAAAATGAGTTAAATCGTATGTACCAATGAAAATTTAGATTGGTGTCATACACTAATTTAAAAAAAAATCGCCGTTTCATAGAAACTTTTTTTGATGTCCCACTGCATTCCTTGAATGACTTTTTCAACAATGTTGAGTTCTTTCCTTTCTTTGACTAAATTGTCTCAAATTTGCATTTTTCTCGGTTTCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTGGGTCATGAGTATTTTG</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCAGGTAATATTTTTGGTTA</pcr_primer_p2>
		<pcr_amplicon_size>365</pcr_amplicon_size>
		<canonical_amplicon>GTTTGGGTCATGAGTATTTTGGCAGGCTGATTTTCTAATTTGCTCGTCCCACCTTTTTGGAATCTCGATTTTGAAAAAGTCAAATTTTGAGCACATCGTTTAGTTTTCAGAAAATTTTCAACAATTACTGTAAAACCTGTAACAGAAGGGCCCCTAACTTAACTGTAAGTTAATTTTTCTCAGTCCCTGTCAACGATATCAAAAAGTTGCCAGCTGGTAAATTGTTTATCATGATATCAGGAGGGATTTGTCAGTTGACAGATTTTTGATATCTTGCATAGAAATGGAGATAAATGAGCTCAAACGTTTAAGGGCCCTTCTATCACAGCTTTCACGATATTAACCAAAAATATTACCTGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>GTTTGGGTCATGAGTATTTTGGCAGGCTGATTTTCTAATTTGCTCGTCCCACCTTTTTGGAATCTCGATTTTGAAAAAGTCAAATTTTGAGCACATCRTTTAGTTTTCAGAAAATTTTCAACAATTACTGTAAAACCTGTAACAGAAGGGCCCCTAACTTAACTGTAAGTTAATTTTTCTCAGTCCCTGTCAACGATATCAAAAAGTTGCCAGCTGGTAAATTGTTTATCATGATATCAGGAGGGATTTGTCAGTTGACAGATTTTTGATATCTTGCATAGAAATGGAGATAAATGAGCTCAAACGTTTAAGGGCCCTTCTATCACAGCTTTCACGATATTAACCAAAAATATTACCTGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19782</snp_id>
        <super_contig>c012101062.Contig1</super_contig>
        <contig_pos>24748</contig_pos>
        <strand>+</strand>
        <context>TCATTTTTTT[C/T]TCGTCGCAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCATTGTTCTCGTTTTTATCTCCGTTTCAAATTTCCTTTCATTTTTTT</left_flank>
        <right_flank>TCGTCGCAGCTGTGTCGCATCATCATTTTTACCGTTTTTTGTTTCTATTC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAGACCCTTCTCGATGCTTCCCAATCAACAAAAAAACAACAGGATGAATCAATCTCCTTGCAAGGTGTGTGAATATCGTCCCCCTCCCGTCCCAATTCTACAATCACAATCGTCACTTTCTCTTTTTTTTCTCGAAAAGTGATCCGTTTCGGAAAAAGAGAATTCTCCTCTCCCGACTATTCTTCTCCCTTCTCGAAACTTCGAAGCCGCAGGCAGGCGTCTGCTCGCCTGCGTCTCTTCTCTTGACCCACTGTCTCCTCTACACGTGGCCTCAGCGATTGGTTTGTTGCGCGGAGAACCTTCTAGAACAATCTACTCGCTTCCCGAAGACCTCGGTTTCGCCTGTACAAAAACACCAACCTCCTGACCGTGGATTCTTCTTTATTTTTATATTTTGATCTACAATTATTTGCAAATTCTATTGACATAATATCAGACCTGTCTTCCTTCCATTGTTCTCGTTTTTATCTCCGTTTCAAATTTCCTTTCATTTTTTTTTCGTCGCAGCTGTGTCGCATCATCATTTTTACCGTTTTTTGTTTCTATTCAAATTCATCTTGCAGCAAATGACGCAACTCACCAGCAACTTCAAGCAGTTTTCGAACCAACAAAACTCGAATTATCAACAGCAATTTTATAATTTTGACTCCCTCAATAATTCGTCACAGCGAATCGACGATATTCATTATTATGTAAGAGAGCCCAACGGAAAACGACCGTTTCCCACCGAATTCGAATTGGTGAGTAATAGCTGAATTTCTAGAGGAATTTCTAGACATTTCTTCGATAAATTTGGGGGGCTCCAACCAAAATTTTTTTATTGGATTAAAATGTGTTTAAAAAAATGTCGATTCATATAGAACCAAAGCAAAAAATTCGAAAATTTGCAAAACTTCGAAGAATTGCTTCAAAAAGCGCATGATTCTCAGTTTTCGTCCATTTCTGGAAACTTCGAGAAGGTTCTGGAATTGTTTTTGAATTTCCGTCAAAACTTAAAA</canonical>
            <polymorphic>TCAAGACCCTTCTCGATGCTTCCCAATCAACAAAAAAACAACAGGATGAATCAATCTCCTTGCAAGGTGTGTGAATATCGTCCCCCTCCCGTCCCAATTCTACAATCACAATCGTCACTTTCTCTTTTTTTTCTCGAAAAGTGATCCGTTTCGGAAAAAGAGAATTCTCCTCTCCCGACTATTCTTCTCCCTTCTCGAAACTTCGAAGCCGCAGGCAGGCGTCTGCTCGCCTGCGTCTCTTCTCTTGACCCACTGTCTCCTCTACACGTGGCCTCAGCGATTGGTTTGTTGCGCGGAGAACCTTCTAGAACAATCTACTCGCTTCCCGAAGACCTCGGTTTCGCCTGTACAAAAACACCAACCTCCTGACCGTGGATTCTTCTTTATTTTTATATTTTGATCTACAATTATTTGCAAATTCTATTGACATAATATCAGACCTGTCTTCCTTCCATTGTTCTCGTTTTTATCTCCGTTTCAAATTTCCTTTCATTTTTTTYTCGTCGCAGCTGTGTCGCATCATCATTTTTACCGTTTTTTGTTTCTATTCAAATTCATCTTGCAGCAAATGACGCAACTCACCAGCAACTTCAAGCAGTTTTCGAACCAACAAAACTCGAATTATCAACAGCAATTTTATAATTTTGACTCCCTCAATAATTCGTCACAGCGAATCGACGATATTCATTATTATGTAAGAGAGCCCAACGGAAAACGACCGTTTCCCACCGAATTCGAATTGGTGAGTAATAGCTGAATTTCTAGAGGAATTTCTAGACATTTCTTCGATAAATTTGGGGGGCTCCAACCAAAATTTTTTTATTGGATTAAAATGTGTTTAAAAAAATGTCGATTCATATAGAACCAAAGCAAAAAATTCGAAAATTTGCAAAACTTCGAAGAATTGCTTCAAAAAGCGCATGATTCTCAGTTTTCGTCCATTTCTGGAAACTTCGAGAAGGTTCTGGAATTGTTTTTGAATTTCCGTCAAAACTTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCCATTGTTCTCGTTTTTAT</pcr_primer_p1>
		<pcr_primer_p2>CATAATAATGAATATCGTCGATTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTTCCATTGTTCTCGTTTTTATCTCCGTTTCAAATTTCCTTTCATTTTTTTTTCGTCGCAGCTGTGTCGCATCATCATTTTTACCGTTTTTTGTTTCTATTCAAATTCATCTTGCAGCAAATGACGCAACTCACCAGCAACTTCAAGCAGTTTTCGAACCAACAAAACTCGAATTATCAACAGCAATTTTATAATTTTGACTCCCTCAATAATTCGTCACAGCGAATCGACGATATTCATTATTATG</canonical_amplicon>
		<polymorphic_amplicon>CTTCCATTGTTCTCGTTTTTATCTCCGTTTCAAATTTCCTTTCATTTTTTTYTCGTCGCAGCTGTGTCGCATCATCATTTTTACCGTTTTTTGTTTCTATTCAAATTCATCTTGCAGCAAATGACGCAACTCACCAGCAACTTCAAGCAGTTTTCGAACCAACAAAACTCGAATTATCAACAGCAATTTTATAATTTTGACTCCCTCAATAATTCGTCACAGCGAATCGACGATATTCATTATTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19783</snp_id>
        <super_contig>c012101062.Contig1</super_contig>
        <contig_pos>24945</contig_pos>
        <strand>+</strand>
        <context>ATTATTATGT[A/G]AGAGAGCCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACTCCCTCAATAATTCGTCACAGCGAATCGACGATATTCATTATTATGT</left_flank>
        <right_flank>AGAGAGCCCAACGGAAAACGACCGTTTCCCACCGAATTCGAATTGGTGAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTTCGAAGCCGCAGGCAGGCGTCTGCTCGCCTGCGTCTCTTCTCTTGACCCACTGTCTCCTCTACACGTGGCCTCAGCGATTGGTTTGTTGCGCGGAGAACCTTCTAGAACAATCTACTCGCTTCCCGAAGACCTCGGTTTCGCCTGTACAAAAACACCAACCTCCTGACCGTGGATTCTTCTTTATTTTTATATTTTGATCTACAATTATTTGCAAATTCTATTGACATAATATCAGACCTGTCTTCCTTCCATTGTTCTCGTTTTTATCTCCGTTTCAAATTTCCTTTCATTTTTTTTTCGTCGCAGCTGTGTCGCATCATCATTTTTACCGTTTTTTGTTTCTATTCAAATTCATCTTGCAGCAAATGACGCAACTCACCAGCAACTTCAAGCAGTTTTCGAACCAACAAAACTCGAATTATCAACAGCAATTTTATAATTTTGACTCCCTCAATAATTCGTCACAGCGAATCGACGATATTCATTATTATGTAAGAGAGCCCAACGGAAAACGACCGTTTCCCACCGAATTCGAATTGGTGAGTAATAGCTGAATTTCTAGAGGAATTTCTAGACATTTCTTCGATAAATTTGGGGGGCTCCAACCAAAATTTTTTTATTGGATTAAAATGTGTTTAAAAAAATGTCGATTCATATAGAACCAAAGCAAAAAATTCGAAAATTTGCAAAACTTCGAAGAATTGCTTCAAAAAGCGCATGATTCTCAGTTTTCGTCCATTTCTGGAAACTTCGAGAAGGTTCTGGAATTGTTTTTGAATTTCCGTCAAAACTTAAAATTTTAGGCAAAAAGTCCCGGAAAAGAAAAATGAGTGTTTTCAGTTTTGGCGGGAATTTGAAAAAAAATTCGAGAACCTTCTAGAAGTTTCCAGAAAGAGACGAAAACTGATATTTATTCGCCTTTTGAAGCGATTTCTCAAGGTTTTGCAAGTTTTTAAAATTTTTTTCTGGAGTTGCTATGGGAATCTAAATATTT</canonical>
            <polymorphic>AAACTTCGAAGCCGCAGGCAGGCGTCTGCTCGCCTGCGTCTCTTCTCTTGACCCACTGTCTCCTCTACACGTGGCCTCAGCGATTGGTTTGTTGCGCGGAGAACCTTCTAGAACAATCTACTCGCTTCCCGAAGACCTCGGTTTCGCCTGTACAAAAACACCAACCTCCTGACCGTGGATTCTTCTTTATTTTTATATTTTGATCTACAATTATTTGCAAATTCTATTGACATAATATCAGACCTGTCTTCCTTCCATTGTTCTCGTTTTTATCTCCGTTTCAAATTTCCTTTCATTTTTTTTTCGTCGCAGCTGTGTCGCATCATCATTTTTACCGTTTTTTGTTTCTATTCAAATTCATCTTGCAGCAAATGACGCAACTCACCAGCAACTTCAAGCAGTTTTCGAACCAACAAAACTCGAATTATCAACAGCAATTTTATAATTTTGACTCCCTCAATAATTCGTCACAGCGAATCGACGATATTCATTATTATGTRAGAGAGCCCAACGGAAAACGACCGTTTCCCACCGAATTCGAATTGGTGAGTAATAGCTGAATTTCTAGAGGAATTTCTAGACATTTCTTCGATAAATTTGGGGGGCTCCAACCAAAATTTTTTTATTGGATTAAAATGTGTTTAAAAAAATGTCGATTCATATAGAACCAAAGCAAAAAATTCGAAAATTTGCAAAACTTCGAAGAATTGCTTCAAAAAGCGCATGATTCTCAGTTTTCGTCCATTTCTGGAAACTTCGAGAAGGTTCTGGAATTGTTTTTGAATTTCCGTCAAAACTTAAAATTTTAGGCAAAAAGTCCCGGAAAAGAAAAATGAGTGTTTTCAGTTTTGGCGGGAATTTGAAAAAAAATTCGAGAACCTTCTAGAAGTTTCCAGAAAGAGACGAAAACTGATATTTATTCGCCTTTTGAAGCGATTTCTCAAGGTTTTGCAAGTTTTTAAAATTTTTTTCTGGAGTTGCTATGGGAATCTAAATATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATTATCAACAGCAATTTTAT</pcr_primer_p1>
		<pcr_primer_p2>TGGTTCTATATGAATCGACATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGAATTATCAACAGCAATTTTATAATTTTGACTCCCTCAATAATTCGTCACAGCGAATCGACGATATTCATTATTATGTAAGAGAGCCCAACGGAAAACGACCGTTTCCCACCGAATTCGAATTGGTGAGTAATAGCTGAATTTCTAGAGGAATTTCTAGACATTTCTTCGATAAATTTGGGGGGCTCCAACCAAAATTTTTTTATTGGATTAAAATGTGTTTAAAAAAATGTCGATTCATATAGAACCA</canonical_amplicon>
		<polymorphic_amplicon>CGAATTATCAACAGCAATTTTATAATTTTGACTCCCTCAATAATTCGTCACAGCGAATCGACGATATTCATTATTATGTRAGAGAGCCCAACGGAAAACGACCGTTTCCCACCGAATTCGAATTGGTGAGTAATAGCTGAATTTCTAGAGGAATTTCTAGACATTTCTTCGATAAATTTGGGGGGCTCCAACCAAAATTTTTTTATTGGATTAAAATGTGTTTAAAAAAATGTCGATTCATATAGAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19784</snp_id>
        <super_contig>c012101062.Contig1</super_contig>
        <contig_pos>25014</contig_pos>
        <strand>+</strand>
        <context>GAATTTCTAG[A/T]GGAATTTCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGACCGTTTCCCACCGAATTCGAATTGGTGAGTAATAGCTGAATTTCTAG</left_flank>
        <right_flank>GGAATTTCTAGACATTTCTTCGATAAATTTGGGGGGCTCCAACCAAAATT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTGGCCTCAGCGATTGGTTTGTTGCGCGGAGAACCTTCTAGAACAATCTACTCGCTTCCCGAAGACCTCGGTTTCGCCTGTACAAAAACACCAACCTCCTGACCGTGGATTCTTCTTTATTTTTATATTTTGATCTACAATTATTTGCAAATTCTATTGACATAATATCAGACCTGTCTTCCTTCCATTGTTCTCGTTTTTATCTCCGTTTCAAATTTCCTTTCATTTTTTTTTCGTCGCAGCTGTGTCGCATCATCATTTTTACCGTTTTTTGTTTCTATTCAAATTCATCTTGCAGCAAATGACGCAACTCACCAGCAACTTCAAGCAGTTTTCGAACCAACAAAACTCGAATTATCAACAGCAATTTTATAATTTTGACTCCCTCAATAATTCGTCACAGCGAATCGACGATATTCATTATTATGTAAGAGAGCCCAACGGAAAACGACCGTTTCCCACCGAATTCGAATTGGTGAGTAATAGCTGAATTTCTAGAGGAATTTCTAGACATTTCTTCGATAAATTTGGGGGGCTCCAACCAAAATTTTTTTATTGGATTAAAATGTGTTTAAAAAAATGTCGATTCATATAGAACCAAAGCAAAAAATTCGAAAATTTGCAAAACTTCGAAGAATTGCTTCAAAAAGCGCATGATTCTCAGTTTTCGTCCATTTCTGGAAACTTCGAGAAGGTTCTGGAATTGTTTTTGAATTTCCGTCAAAACTTAAAATTTTAGGCAAAAAGTCCCGGAAAAGAAAAATGAGTGTTTTCAGTTTTGGCGGGAATTTGAAAAAAAATTCGAGAACCTTCTAGAAGTTTCCAGAAAGAGACGAAAACTGATATTTATTCGCCTTTTGAAGCGATTTCTCAAGGTTTTGCAAGTTTTTAAAATTTTTTTCTGGAGTTGCTATGGGAATCTAAATATTTTGCTACACATTTTGATGTTCTGAATTTCAAAAAAAATTGAAAAAATGACAATTTAAGCTCTTCAAATAG</canonical>
            <polymorphic>CGTGGCCTCAGCGATTGGTTTGTTGCGCGGAGAACCTTCTAGAACAATCTACTCGCTTCCCGAAGACCTCGGTTTCGCCTGTACAAAAACACCAACCTCCTGACCGTGGATTCTTCTTTATTTTTATATTTTGATCTACAATTATTTGCAAATTCTATTGACATAATATCAGACCTGTCTTCCTTCCATTGTTCTCGTTTTTATCTCCGTTTCAAATTTCCTTTCATTTTTTTTTCGTCGCAGCTGTGTCGCATCATCATTTTTACCGTTTTTTGTTTCTATTCAAATTCATCTTGCAGCAAATGACGCAACTCACCAGCAACTTCAAGCAGTTTTCGAACCAACAAAACTCGAATTATCAACAGCAATTTTATAATTTTGACTCCCTCAATAATTCGTCACAGCGAATCGACGATATTCATTATTATGTAAGAGAGCCCAACGGAAAACGACCGTTTCCCACCGAATTCGAATTGGTGAGTAATAGCTGAATTTCTAGWGGAATTTCTAGACATTTCTTCGATAAATTTGGGGGGCTCCAACCAAAATTTTTTTATTGGATTAAAATGTGTTTAAAAAAATGTCGATTCATATAGAACCAAAGCAAAAAATTCGAAAATTTGCAAAACTTCGAAGAATTGCTTCAAAAAGCGCATGATTCTCAGTTTTCGTCCATTTCTGGAAACTTCGAGAAGGTTCTGGAATTGTTTTTGAATTTCCGTCAAAACTTAAAATTTTAGGCAAAAAGTCCCGGAAAAGAAAAATGAGTGTTTTCAGTTTTGGCGGGAATTTGAAAAAAAATTCGAGAACCTTCTAGAAGTTTCCAGAAAGAGACGAAAACTGATATTTATTCGCCTTTTGAAGCGATTTCTCAAGGTTTTGCAAGTTTTTAAAATTTTTTTCTGGAGTTGCTATGGGAATCTAAATATTTTGCTACACATTTTGATGTTCTGAATTTCAAAAAAAATTGAAAAAATGACAATTTAAGCTCTTCAAATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>397 171 105 97 79 40 39 20 12 10 10 10 10</canonical_bands>
                <polymorphic_bands>409 171 105 97 79 40 39 20 10 10 10 10</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>457 306 187 38 12</canonical_bands>
                <polymorphic_bands>469 306 187 38</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAATTATCAACAGCAATTTTAT</pcr_primer_p1>
		<pcr_primer_p2>TGGTTCTATATGAATCGACATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGAATTATCAACAGCAATTTTATAATTTTGACTCCCTCAATAATTCGTCACAGCGAATCGACGATATTCATTATTATGTAAGAGAGCCCAACGGAAAACGACCGTTTCCCACCGAATTCGAATTGGTGAGTAATAGCTGAATTTCTAGAGGAATTTCTAGACATTTCTTCGATAAATTTGGGGGGCTCCAACCAAAATTTTTTTATTGGATTAAAATGTGTTTAAAAAAATGTCGATTCATATAGAACCA</canonical_amplicon>
		<polymorphic_amplicon>CGAATTATCAACAGCAATTTTATAATTTTGACTCCCTCAATAATTCGTCACAGCGAATCGACGATATTCATTATTATGTAAGAGAGCCCAACGGAAAACGACCGTTTCCCACCGAATTCGAATTGGTGAGTAATAGCTGAATTTCTAGWGGAATTTCTAGACATTTCTTCGATAAATTTGGGGGGCTCCAACCAAAATTTTTTTATTGGATTAAAATGTGTTTAAAAAAATGTCGATTCATATAGAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19785</snp_id>
        <super_contig>c012101062.Contig1</super_contig>
        <contig_pos>25063</contig_pos>
        <strand>+</strand>
        <context>CCAACCAAAA[A/T]TTTTTTATTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGGAATTTCTAGACATTTCTTCGATAAATTTGGGGGGCTCCAACCAAAA</left_flank>
        <right_flank>TTTTTTATTGGATTAAAATGTGTTTAAAAAAATGTCGATTCATATAGAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTCGCTTCCCGAAGACCTCGGTTTCGCCTGTACAAAAACACCAACCTCCTGACCGTGGATTCTTCTTTATTTTTATATTTTGATCTACAATTATTTGCAAATTCTATTGACATAATATCAGACCTGTCTTCCTTCCATTGTTCTCGTTTTTATCTCCGTTTCAAATTTCCTTTCATTTTTTTTTCGTCGCAGCTGTGTCGCATCATCATTTTTACCGTTTTTTGTTTCTATTCAAATTCATCTTGCAGCAAATGACGCAACTCACCAGCAACTTCAAGCAGTTTTCGAACCAACAAAACTCGAATTATCAACAGCAATTTTATAATTTTGACTCCCTCAATAATTCGTCACAGCGAATCGACGATATTCATTATTATGTAAGAGAGCCCAACGGAAAACGACCGTTTCCCACCGAATTCGAATTGGTGAGTAATAGCTGAATTTCTAGAGGAATTTCTAGACATTTCTTCGATAAATTTGGGGGGCTCCAACCAAAATTTTTTTATTGGATTAAAATGTGTTTAAAAAAATGTCGATTCATATAGAACCAAAGCAAAAAATTCGAAAATTTGCAAAACTTCGAAGAATTGCTTCAAAAAGCGCATGATTCTCAGTTTTCGTCCATTTCTGGAAACTTCGAGAAGGTTCTGGAATTGTTTTTGAATTTCCGTCAAAACTTAAAATTTTAGGCAAAAAGTCCCGGAAAAGAAAAATGAGTGTTTTCAGTTTTGGCGGGAATTTGAAAAAAAATTCGAGAACCTTCTAGAAGTTTCCAGAAAGAGACGAAAACTGATATTTATTCGCCTTTTGAAGCGATTTCTCAAGGTTTTGCAAGTTTTTAAAATTTTTTTCTGGAGTTGCTATGGGAATCTAAATATTTTGCTACACATTTTGATGTTCTGAATTTCAAAAAAAATTGAAAAAATGACAATTTAAGCTCTTCAAATAGAGGTGGAATATGCGGTAGTGAGCCCAATAACTAAGAAAAAAAAATCTAA</canonical>
            <polymorphic>TACTCGCTTCCCGAAGACCTCGGTTTCGCCTGTACAAAAACACCAACCTCCTGACCGTGGATTCTTCTTTATTTTTATATTTTGATCTACAATTATTTGCAAATTCTATTGACATAATATCAGACCTGTCTTCCTTCCATTGTTCTCGTTTTTATCTCCGTTTCAAATTTCCTTTCATTTTTTTTTCGTCGCAGCTGTGTCGCATCATCATTTTTACCGTTTTTTGTTTCTATTCAAATTCATCTTGCAGCAAATGACGCAACTCACCAGCAACTTCAAGCAGTTTTCGAACCAACAAAACTCGAATTATCAACAGCAATTTTATAATTTTGACTCCCTCAATAATTCGTCACAGCGAATCGACGATATTCATTATTATGTAAGAGAGCCCAACGGAAAACGACCGTTTCCCACCGAATTCGAATTGGTGAGTAATAGCTGAATTTCTAGAGGAATTTCTAGACATTTCTTCGATAAATTTGGGGGGCTCCAACCAAAAWTTTTTTATTGGATTAAAATGTGTTTAAAAAAATGTCGATTCATATAGAACCAAAGCAAAAAATTCGAAAATTTGCAAAACTTCGAAGAATTGCTTCAAAAAGCGCATGATTCTCAGTTTTCGTCCATTTCTGGAAACTTCGAGAAGGTTCTGGAATTGTTTTTGAATTTCCGTCAAAACTTAAAATTTTAGGCAAAAAGTCCCGGAAAAGAAAAATGAGTGTTTTCAGTTTTGGCGGGAATTTGAAAAAAAATTCGAGAACCTTCTAGAAGTTTCCAGAAAGAGACGAAAACTGATATTTATTCGCCTTTTGAAGCGATTTCTCAAGGTTTTGCAAGTTTTTAAAATTTTTTTCTGGAGTTGCTATGGGAATCTAAATATTTTGCTACACATTTTGATGTTCTGAATTTCAAAAAAAATTGAAAAAATGACAATTTAAGCTCTTCAAATAGAGGTGGAATATGCGGTAGTGAGCCCAATAACTAAGAAAAAAAAATCTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>180 101 96 96 94 71 64 63 60 55 25 23 21 19 12 12 8</canonical_bands>
                <polymorphic_bands>180 101 96 96 94 84 71 64 60 55 25 23 19 12 12 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>94 90 73 71 69 68 66 64 63 60 55 23 21 19 19 19 18 15 13 12 12 12 11 11 8 8 6</canonical_bands>
                <polymorphic_bands>94 90 84 73 71 69 68 66 64 60 55 23 19 19 19 18 15 13 12 12 12 11 11 8 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAATTATCAACAGCAATTTTAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGGTTCTATATGAATCGACAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGAATTATCAACAGCAATTTTATAATTTTGACTCCCTCAATAATTCGTCACAGCGAATCGACGATATTCATTATTATGTAAGAGAGCCCAACGGAAAACGACCGTTTCCCACCGAATTCGAATTGGTGAGTAATAGCTGAATTTCTAGAGGAATTTCTAGACATTTCTTCGATAAATTTGGGGGGCTCCAACCAAAATTTTTTTATTGGATTAAAATGTGTTTAAAAAAATGTCGATTCATATAGAACCAAA</canonical_amplicon>
		<polymorphic_amplicon>CGAATTATCAACAGCAATTTTATAATTTTGACTCCCTCAATAATTCGTCACAGCGAATCGACGATATTCATTATTATGTAAGAGAGCCCAACGGAAAACGACCGTTTCCCACCGAATTCGAATTGGTGAGTAATAGCTGAATTTCTAGAGGAATTTCTAGACATTTCTTCGATAAATTTGGGGGGCTCCAACCAAAAWTTTTTTATTGGATTAAAATGTGTTTAAAAAAATGTCGATTCATATAGAACCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19786</snp_id>
        <super_contig>c012101062.Contig1</super_contig>
        <contig_pos>26588</contig_pos>
        <strand>+</strand>
        <context>CTAAACCCTT[A/T]TAATTCTGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGGACCTCCCCAGATGTCTAGTGTCCCTCAAAATCTAGCCTAAACCCTT</left_flank>
        <right_flank>TAATTCTGCTTCAAAGTCTTAATATATGCATTTTTAGGACATGGAATATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATAACATTGAATTTTTAGCAAAACAATTTCAGGCAAGAGGTGGCCTTATCAAATATTTGCGCTCTCGCCGCCGCCGCTCTCTCTCTCTCTTGTTTTCGCTAATTTGGCCATCTCTATGATAGACTCTATCCGTTCCGTTATCTCTCCTCACTCTTTCTCTCTCTTTCCCCGTTCCAATCCCCATTAGTTTCTATACAAAACTGATTGAGCGCATTTCCATGGAACGAGAAAAGAAATGTCGTGAAATATGGCGTCCTCGGTGAGGTTCACCGAGTCTTTCTGCGCTCTCTCACTTCCGCTTTCTCTCTCGCCGGGTGTGTCGCCCTCCTCTTGATGCGCCGGCACCGGCACGCCTCGTTCCTTCTCGCTTCTAAGCAGATTACCTCTCTTTCGCTTTTTCTTCTCTTCTACCACCCACCTCTAACCAGTCAAAATGAACAGTGATCACCTGGACCTCCCCAGATGTCTAGTGTCCCTCAAAATCTAGCCTAAACCCTTTTAATTCTGCTTCAAAGTCTTAATATATGCATTTTTAGGACATGGAATATGTGCCGAGAACGAAGCGACGATATGATAAAATAAGTGCGTGTCTGGAGAGCTTCTCGATCTCCAACGACAAACCGAATCCTATAAATCTGTAAGTTTTAAGCCATTTAAGACTTTTGAATGATTAATTTTTGGATTTTTCAGTGAGTCCTCATCTGACGAAGAGATGGACGAGGTGACGGTTCCAGAATACGACGAGGAGATCGAGTCGACGTCTACACCTGTAGTCGTGGAGCCAGATGACGAGCCAGCTGTTGCCAAGAAGATTCGGTTGGATGGATCGCTTCAAAAGTATTTGGAGAAGTGCAAGCAAGATCCGTATGCCTTTCTGCCAAAGTGAGTTTTTTTCTTGATTTAGAGAGGAAACCTAAATTCATTTTCCAGAACCGAAACACTGAAAGGCAACGAAGTAGCGATCTGGCAGCCGACGATCCTCGTTTCGCCCAAAAATGA</canonical>
            <polymorphic>GATAACATTGAATTTTTAGCAAAACAATTTCAGGCAAGAGGTGGCCTTATCAAATATTTGCGCTCTCGCCGCCGCCGCTCTCTCTCTCTCTTGTTTTCGCTAATTTGGCCATCTCTATGATAGACTCTATCCGTTCCGTTATCTCTCCTCACTCTTTCTCTCTCTTTCCCCGTTCCAATCCCCATTAGTTTCTATACAAAACTGATTGAGCGCATTTCCATGGAACGAGAAAAGAAATGTCGTGAAATATGGCGTCCTCGGTGAGGTTCACCGAGTCTTTCTGCGCTCTCTCACTTCCGCTTTCTCTCTCGCCGGGTGTGTCGCCCTCCTCTTGATGCGCCGGCACCGGCACGCCTCGTTCCTTCTCGCTTCTAAGCAGATTACCTCTCTTTCGCTTTTTCTTCTCTTCTACCACCCACCTCTAACCAGTCAAAATGAACAGTGATCACCTGGACCTCCCCAGATGTCTAGTGTCCCTCAAAATCTAGCCTAAACCCTTWTAATTCTGCTTCAAAGTCTTAATATATGCATTTTTAGGACATGGAATATGTGCCGAGAACGAAGCGACGATATGATAAAATAAGTGCGTGTCTGGAGAGCTTCTCGATCTCCAACGACAAACCGAATCCTATAAATCTGTAAGTTTTAAGCCATTTAAGACTTTTGAATGATTAATTTTTGGATTTTTCAGTGAGTCCTCATCTGACGAAGAGATGGACGAGGTGACGGTTCCAGAATACGACGAGGAGATCGAGTCGACGTCTACACCTGTAGTCGTGGAGCCAGATGACGAGCCAGCTGTTGCCAAGAAGATTCGGTTGGATGGATCGCTTCAAAAGTATTTGGAGAAGTGCAAGCAAGATCCGTATGCCTTTCTGCCAAAGTGAGTTTTTTTCTTGATTTAGAGAGGAAACCTAAATTCATTTTCCAGAACCGAAACACTGAAAGGCAACGAAGTAGCGATCTGGCAGCCGACGATCCTCGTTTCGCCCAAAAATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>500 328 127 19 17 9</canonical_bands>
                <polymorphic_bands>519 328 127 17 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTAACCAGTCAAAATGAACAG</pcr_primer_p1>
		<pcr_primer_p2>TCAAAAGTCTTAAATGGCTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTCTAACCAGTCAAAATGAACAGTGATCACCTGGACCTCCCCAGATGTCTAGTGTCCCTCAAAATCTAGCCTAAACCCTTTTAATTCTGCTTCAAAGTCTTAATATATGCATTTTTAGGACATGGAATATGTGCCGAGAACGAAGCGACGATATGATAAAATAAGTGCGTGTCTGGAGAGCTTCTCGATCTCCAACGACAAACCGAATCCTATAAATCTGTAAGTTTTAAGCCATTTAAGACTTTTGA</canonical_amplicon>
		<polymorphic_amplicon>CTCTAACCAGTCAAAATGAACAGTGATCACCTGGACCTCCCCAGATGTCTAGTGTCCCTCAAAATCTAGCCTAAACCCTTWTAATTCTGCTTCAAAGTCTTAATATATGCATTTTTAGGACATGGAATATGTGCCGAGAACGAAGCGACGATATGATAAAATAAGTGCGTGTCTGGAGAGCTTCTCGATCTCCAACGACAAACCGAATCCTATAAATCTGTAAGTTTTAAGCCATTTAAGACTTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19787</snp_id>
        <super_contig>c012101062.Contig1</super_contig>
        <contig_pos>96991</contig_pos>
        <strand>+</strand>
        <context>TGTTCCGTGA[A/G]CTGTGCAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATCAATGAGCTTGTAAATCAGAAATCTTATTTTCAGTATGTTCCGTGA</left_flank>
        <right_flank>CTGTGCAAGAAGAAGAATTGCAAAGCTCTGGCGGGCAATGGAATCTGTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCAATCGGACGGCGGTGCTCCCAATGGAAGTGTCCTGTGATCACAATCCGTGCATGAACGATGGAAAATGTGTAGACTATGGTGATGGATACGCATGCATTTGTCCACCTGGATTCTACGGACTCAATTGTGATCGACGATTGCGTAAGTGCTTTGAGAAAAATGGAGTTCTAACTCTTCTAAAATTTTCAGGATGTGCCACAACGACGTGCGCCAACGGTGGATTCTGTCGAATGGATAACAACACCATGACTTGTGCCTGTCCTCTTGGATACTCCGGAGATTATTGTGAGATCATGGAACGACTCGATTGCAAGCAAAACCCCTGTAAAAACGGTGGAGTGTGCAATGGAACCGATGGAACCTGCGAGTGCATGTACGGATACACTGGAACCAGGTGTCAGGAGAAGGTTGAAATCGATAAGAGCAAGGAGATGTTAGTGTTTTTTATCAATGAGCTTGTAAATCAGAAATCTTATTTTCAGTATGTTCCGTGAACTGTGCAAGAAGAAGAATTGCAAAGCTCTGGCGGGCAATGGAATCTGTGATGAAGACTGTAACTATGCAGAGTGTCAGTTCGACGGTGGAGACTGTTCCGGAGGACAACAACCGTTCTCCAGATGCATGTACCCTGCAAAATGCGCCCGTTCGTTTGCAGACGGAATCTGTAATCCAGAGTGCAACAACGAGAAATGTCTCTACGATGGGATGGATTGCCAATCGGAACTCTACCACTGTCCGGAATATATCAGAGACTACTGTATCAAAAAGCGTGGCAATGGAGAATGTGACTACGCGTGTAGCTTCGTTGGATGTGGTTTCGATGGTGGTGACTGTAATAATGGAACAGGAGCCATGATTCTGAATGACATCCGAATCGTAATTCAAATCGATCCATTGGTTTTCCGAGAGACTGGAGGAGAAACTCTGATGGAGATTAGTACGCAACTTCGAGCGGCCGTACGAATTCAGAAGGACGAATCGGGACCGCTGGTGTT</canonical>
            <polymorphic>ACTCAATCGGACGGCGGTGCTCCCAATGGAAGTGTCCTGTGATCACAATCCGTGCATGAACGATGGAAAATGTGTAGACTATGGTGATGGATACGCATGCATTTGTCCACCTGGATTCTACGGACTCAATTGTGATCGACGATTGCGTAAGTGCTTTGAGAAAAATGGAGTTCTAACTCTTCTAAAATTTTCAGGATGTGCCACAACGACGTGCGCCAACGGTGGATTCTGTCGAATGGATAACAACACCATGACTTGTGCCTGTCCTCTTGGATACTCCGGAGATTATTGTGAGATCATGGAACGACTCGATTGCAAGCAAAACCCCTGTAAAAACGGTGGAGTGTGCAATGGAACCGATGGAACCTGCGAGTGCATGTACGGATACACTGGAACCAGGTGTCAGGAGAAGGTTGAAATCGATAAGAGCAAGGAGATGTTAGTGTTTTTTATCAATGAGCTTGTAAATCAGAAATCTTATTTTCAGTATGTTCCGTGARCTGTGCAAGAAGAAGAATTGCAAAGCTCTGGCGGGCAATGGAATCTGTGATGAAGACTGTAACTATGCAGAGTGTCAGTTCGACGGTGGAGACTGTTCCGGAGGACAACAACCGTTCTCCAGATGCATGTACCCTGCAAAATGCGCCCGTTCGTTTGCAGACGGAATCTGTAATCCAGAGTGCAACAACGAGAAATGTCTCTACGATGGGATGGATTGCCAATCGGAACTCTACCACTGTCCGGAATATATCAGAGACTACTGTATCAAAAAGCGTGGCAATGGAGAATGTGACTACGCGTGTAGCTTCGTTGGATGTGGTTTCGATGGTGGTGACTGTAATAATGGAACAGGAGCCATGATTCTGAATGACATCCGAATCGTAATTCAAATCGATCCATTGGTTTTCCGAGAGACTGGAGGAGAAACTCTGATGGAGATTAGTACGCAACTTCGAGCGGCCGTACGAATTCAGAAGGACGAATCGGGACCGCTGGTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>221 164 163 125 117 75 56 27 24 19 9</canonical_bands>
                <polymorphic_bands>221 220 163 125 117 75 27 24 19 9</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 391 76 31</canonical_bands>
                <polymorphic_bands>893 76 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCAAAACCCCTGTAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GCATAGTTACAGTCTTCATCACA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGCAAAACCCCTGTAAAAACGGTGGAGTGTGCAATGGAACCGATGGAACCTGCGAGTGCATGTACGGATACACTGGAACCAGGTGTCAGGAGAAGGTTGAAATCGATAAGAGCAAGGAGATGTTAGTGTTTTTTATCAATGAGCTTGTAAATCAGAAATCTTATTTTCAGTATGTTCCGTGAACTGTGCAAGAAGAAGAATTGCAAAGCTCTGGCGGGCAATGGAATCTGTGATGAAGACTGTAACTATGC</canonical_amplicon>
		<polymorphic_amplicon>AGCAAAACCCCTGTAAAAACGGTGGAGTGTGCAATGGAACCGATGGAACCTGCGAGTGCATGTACGGATACACTGGAACCAGGTGTCAGGAGAAGGTTGAAATCGATAAGAGCAAGGAGATGTTAGTGTTTTTTATCAATGAGCTTGTAAATCAGAAATCTTATTTTCAGTATGTTCCGTGARCTGTGCAAGAAGAAGAATTGCAAAGCTCTGGCGGGCAATGGAATCTGTGATGAAGACTGTAACTATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19788</snp_id>
        <super_contig>c012101062.Contig1</super_contig>
        <contig_pos>97157</contig_pos>
        <strand>+</strand>
        <context>TGCAGACGGA[A/T]TCTGTAATCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTCCAGATGCATGTACCCTGCAAAATGCGCCCGTTCGTTTGCAGACGGA</left_flank>
        <right_flank>TCTGTAATCCAGAGTGCAACAACGAGAAATGTCTCTACGATGGGATGGAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGTTCTAACTCTTCTAAAATTTTCAGGATGTGCCACAACGACGTGCGCCAACGGTGGATTCTGTCGAATGGATAACAACACCATGACTTGTGCCTGTCCTCTTGGATACTCCGGAGATTATTGTGAGATCATGGAACGACTCGATTGCAAGCAAAACCCCTGTAAAAACGGTGGAGTGTGCAATGGAACCGATGGAACCTGCGAGTGCATGTACGGATACACTGGAACCAGGTGTCAGGAGAAGGTTGAAATCGATAAGAGCAAGGAGATGTTAGTGTTTTTTATCAATGAGCTTGTAAATCAGAAATCTTATTTTCAGTATGTTCCGTGAACTGTGCAAGAAGAAGAATTGCAAAGCTCTGGCGGGCAATGGAATCTGTGATGAAGACTGTAACTATGCAGAGTGTCAGTTCGACGGTGGAGACTGTTCCGGAGGACAACAACCGTTCTCCAGATGCATGTACCCTGCAAAATGCGCCCGTTCGTTTGCAGACGGAATCTGTAATCCAGAGTGCAACAACGAGAAATGTCTCTACGATGGGATGGATTGCCAATCGGAACTCTACCACTGTCCGGAATATATCAGAGACTACTGTATCAAAAAGCGTGGCAATGGAGAATGTGACTACGCGTGTAGCTTCGTTGGATGTGGTTTCGATGGTGGTGACTGTAATAATGGAACAGGAGCCATGATTCTGAATGACATCCGAATCGTAATTCAAATCGATCCATTGGTTTTCCGAGAGACTGGAGGAGAAACTCTGATGGAGATTAGTACGCAACTTCGAGCGGCCGTACGAATTCAGAAGGACGAATCGGGACCGCTGGTGTTCAAATGGGATGGAGAGTCGGAGACGGAGAGACTGAAGATGGACGCGGAGAAGCTGGAGCAACAGAAAGTACTCTCCCATCATATCAGAAGATATCGGAATGTTGGAATCGTTGGAGTCGTTTTGTATCTTGAGGTGGAGGAGATATGTCAGCCAAAATCCACGTGT</canonical>
            <polymorphic>GGAGTTCTAACTCTTCTAAAATTTTCAGGATGTGCCACAACGACGTGCGCCAACGGTGGATTCTGTCGAATGGATAACAACACCATGACTTGTGCCTGTCCTCTTGGATACTCCGGAGATTATTGTGAGATCATGGAACGACTCGATTGCAAGCAAAACCCCTGTAAAAACGGTGGAGTGTGCAATGGAACCGATGGAACCTGCGAGTGCATGTACGGATACACTGGAACCAGGTGTCAGGAGAAGGTTGAAATCGATAAGAGCAAGGAGATGTTAGTGTTTTTTATCAATGAGCTTGTAAATCAGAAATCTTATTTTCAGTATGTTCCGTGAACTGTGCAAGAAGAAGAATTGCAAAGCTCTGGCGGGCAATGGAATCTGTGATGAAGACTGTAACTATGCAGAGTGTCAGTTCGACGGTGGAGACTGTTCCGGAGGACAACAACCGTTCTCCAGATGCATGTACCCTGCAAAATGCGCCCGTTCGTTTGCAGACGGAWTCTGTAATCCAGAGTGCAACAACGAGAAATGTCTCTACGATGGGATGGATTGCCAATCGGAACTCTACCACTGTCCGGAATATATCAGAGACTACTGTATCAAAAAGCGTGGCAATGGAGAATGTGACTACGCGTGTAGCTTCGTTGGATGTGGTTTCGATGGTGGTGACTGTAATAATGGAACAGGAGCCATGATTCTGAATGACATCCGAATCGTAATTCAAATCGATCCATTGGTTTTCCGAGAGACTGGAGGAGAAACTCTGATGGAGATTAGTACGCAACTTCGAGCGGCCGTACGAATTCAGAAGGACGAATCGGGACCGCTGGTGTTCAAATGGGATGGAGAGTCGGAGACGGAGAGACTGAAGATGGACGCGGAGAAGCTGGAGCAACAGAAAGTACTCTCCCATCATATCAGAAGATATCGGAATGTTGGAATCGTTGGAGTCGTTTTGTATCTTGAGGTGGAGGAGATATGTCAGCCAAAATCCACGTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>316 196 124 123 104 61 59 17</canonical_bands>
                <polymorphic_bands>319 316 124 104 61 59 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGATGAAGACTGTAACTATGC</pcr_primer_p1>
		<pcr_primer_p2>CACGCTTTTTGATACAGTAGTCT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>TGTGATGAAGACTGTAACTATGCAGAGTGTCAGTTCGACGGTGGAGACTGTTCCGGAGGACAACAACCGTTCTCCAGATGCATGTACCCTGCAAAATGCGCCCGTTCGTTTGCAGACGGAATCTGTAATCCAGAGTGCAACAACGAGAAATGTCTCTACGATGGGATGGATTGCCAATCGGAACTCTACCACTGTCCGGAATATATCAGAGACTACTGTATCAAAAAGCGTG</canonical_amplicon>
		<polymorphic_amplicon>TGTGATGAAGACTGTAACTATGCAGAGTGTCAGTTCGACGGTGGAGACTGTTCCGGAGGACAACAACCGTTCTCCAGATGCATGTACCCTGCAAAATGCGCCCGTTCGTTTGCAGACGGAWTCTGTAATCCAGAGTGCAACAACGAGAAATGTCTCTACGATGGGATGGATTGCCAATCGGAACTCTACCACTGTCCGGAATATATCAGAGACTACTGTATCAAAAAGCGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19789</snp_id>
        <super_contig>c012101062.Contig1</super_contig>
        <contig_pos>99189</contig_pos>
        <strand>+</strand>
        <context>ACCGTCGCCA[A/C]ACTATTTTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACCATTTGACGCCTCCACACTCGGATGGATCGTTCTCGTCACCGTCGCCA</left_flank>
        <right_flank>ACTATTTTCCGATGAATATGTCGAACGCGTCGACGCCAGAATTTGTGTAT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGATCGGAACGGAGGGATACGGATAAGTATCACGGAAGGACTGCGCTTCACTACGCAGCACTCTCGGATAACACGCAGATGGTCGATTTCCTGGTGACGATGAACTCGAATAAGGATAAGCAAGACGAGAAGGGAATGACGCCGATGATGTTGGCTGCGAAGGAAGGAAACTTGAAAAGTGTCAAGATTCTGGCGTGTCGAGGAGCGAGTGTCACCATTGTGGATGGTTTTGAGAAGACGGCCAGCCAATACGCTCAGGACGCTTTTCATCACGATGTTGTGGCGTTTTTGAGCAACAAGAACAACTATCTTCCTGAAGTACCACAACCAGATCCACGTAGCCGTGTTTGTAAGAATCGAGAGTCTGCGAATACAAAAGGAGGAAGACAGACAATGAAGAAAGTGAAGAGGAATGGATCAAAGAAGACTCCTATGATTCAAGAAACGAACCATTTGACGCCTCCACACTCGGATGGATCGTTCTCGTCACCGTCGCCACACTATTTTCCGATGAATATGTCGAACGCGTCGACGCCAGAATTTGTGTATAATCCGGATATGGTAAGAATATCTTTTTCCAAAATTTGCTTTATTTTGTGCGGAAAATCGTATAGATTCCCATAAAAATGAAGAAAAAAAATTCGAAAAACCTCGAAAAAATCGCTGAACAAGGTCAATTCTGAACTTCTAAAAAGTTCGGTAAGCTTCATTCGAAATCCCATTCCAGAACCTTCCAGAAGCTTTAACAATTGGACAAGAACTAAGATTTTCCGTGTTTTGAAGAGATTTTTCGATTTTTTGGTATACTTTTTGGTTGGAGTCTCCGTTAAAAAAATATAGGGTTTCCCCTTCAATCTAAAAAAAACTATTTTCTTTCAGGTTCAACCAATTTGGTATCCAACACCACAGCCAACCACCTACTATGGTCCTCCATCGAACTCAAGTGGTTCCAGCACATCACCGGGACATTATGAGCCACCACACGATGGATCGTTTTAT</canonical>
            <polymorphic>TGGATCGGAACGGAGGGATACGGATAAGTATCACGGAAGGACTGCGCTTCACTACGCAGCACTCTCGGATAACACGCAGATGGTCGATTTCCTGGTGACGATGAACTCGAATAAGGATAAGCAAGACGAGAAGGGAATGACGCCGATGATGTTGGCTGCGAAGGAAGGAAACTTGAAAAGTGTCAAGATTCTGGCGTGTCGAGGAGCGAGTGTCACCATTGTGGATGGTTTTGAGAAGACGGCCAGCCAATACGCTCAGGACGCTTTTCATCACGATGTTGTGGCGTTTTTGAGCAACAAGAACAACTATCTTCCTGAAGTACCACAACCAGATCCACGTAGCCGTGTTTGTAAGAATCGAGAGTCTGCGAATACAAAAGGAGGAAGACAGACAATGAAGAAAGTGAAGAGGAATGGATCAAAGAAGACTCCTATGATTCAAGAAACGAACCATTTGACGCCTCCACACTCGGATGGATCGTTCTCGTCACCGTCGCCAMACTATTTTCCGATGAATATGTCGAACGCGTCGACGCCAGAATTTGTGTATAATCCGGATATGGTAAGAATATCTTTTTCCAAAATTTGCTTTATTTTGTGCGGAAAATCGTATAGATTCCCATAAAAATGAAGAAAAAAAATTCGAAAAACCTCGAAAAAATCGCTGAACAAGGTCAATTCTGAACTTCTAAAAAGTTCGGTAAGCTTCATTCGAAATCCCATTCCAGAACCTTCCAGAAGCTTTAACAATTGGACAAGAACTAAGATTTTCCGTGTTTTGAAGAGATTTTTCGATTTTTTGGTATACTTTTTGGTTGGAGTCTCCGTTAAAAAAATATAGGGTTTCCCCTTCAATCTAAAAAAAACTATTTTCTTTCAGGTTCAACCAATTTGGTATCCAACACCACAGCCAACCACCTACTATGGTCCTCCATCGAACTCAAGTGGTTCCAGCACATCACCGGGACATTATGAGCCACCACACGATGGATCGTTTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>176 128 85 60 59 53 50 46 42 33 30 23 22 18 18 16 16 14 13 12 10 10 10 10 9 9 8 5 3 3 3 2 2 2</canonical_bands>
                <polymorphic_bands>176 128 85 60 59 57 53 50 42 33 30 23 22 18 18 16 16 14 13 12 10 10 10 10 9 8 5 3 3 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATCTTCCTGAAGTACCACAAC</pcr_primer_p1>
		<pcr_primer_p2>TATCCGGATTATACACAAATTCT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CTATCTTCCTGAAGTACCACAACCAGATCCACGTAGCCGTGTTTGTAAGAATCGAGAGTCTGCGAATACAAAAGGAGGAAGACAGACAATGAAGAAAGTGAAGAGGAATGGATCAAAGAAGACTCCTATGATTCAAGAAACGAACCATTTGACGCCTCCACACTCGGATGGATCGTTCTCGTCACCGTCGCCACACTATTTTCCGATGAATATGTCGAACGCGTCGACGCCAGAATTTGTGTATAATCCGGATA</canonical_amplicon>
		<polymorphic_amplicon>CTATCTTCCTGAAGTACCACAACCAGATCCACGTAGCCGTGTTTGTAAGAATCGAGAGTCTGCGAATACAAAAGGAGGAAGACAGACAATGAAGAAAGTGAAGAGGAATGGATCAAAGAAGACTCCTATGATTCAAGAAACGAACCATTTGACGCCTCCACACTCGGATGGATCGTTCTCGTCACCGTCGCCAMACTATTTTCCGATGAATATGTCGAACGCGTCGACGCCAGAATTTGTGTATAATCCGGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19790</snp_id>
        <super_contig>c012101062.Contig1</super_contig>
        <contig_pos>98781</contig_pos>
        <strand>+</strand>
        <context>GGTCGATTTC[C/T]TGGTGACGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGCGCTTCACTACGCAGCACTCTCGGATAACACGCAGATGGTCGATTTC</left_flank>
        <right_flank>TGGTGACGATGAACTCGAATAAGGATAAGCAAGACGAGAAGGGAATGACG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCCATTGGATAGCTGGTAATTCGAATGGAAAACCGGAGGATCAGATTACATCAGAGTGTCTCAAGTGCCTGGACGCTGGAGCTGATGTCAATGCTCGGGACTTCAACGAGGACACCCCTCTGATGTTCGCGGTTCGTGCACGGCGAGTTCGCTTGGTGTCACTTATGATGAAACGAGGCGCGAATCCAACAATCTTCAATAAGTCCGAACGATCGGCTCTCCACGAAGCCACAGCTAACAGGGATGTTCGAATGATGACGAACTTGCTGAGGGATCCTCGAATGGTTGACGAGATTGACGAGTTGGATCGGAATGGACGAACGGCACTGATGATGACTGCTGGAGGTTTCGGTGGAACTGAAATGGCTGAGCTTCTGCTGAAAAAAGGAGCAAAGATAGACTGTGATGGATCGGAACGGAGGGATACGGATAAGTATCACGGAAGGACTGCGCTTCACTACGCAGCACTCTCGGATAACACGCAGATGGTCGATTTCCTGGTGACGATGAACTCGAATAAGGATAAGCAAGACGAGAAGGGAATGACGCCGATGATGTTGGCTGCGAAGGAAGGAAACTTGAAAAGTGTCAAGATTCTGGCGTGTCGAGGAGCGAGTGTCACCATTGTGGATGGTTTTGAGAAGACGGCCAGCCAATACGCTCAGGACGCTTTTCATCACGATGTTGTGGCGTTTTTGAGCAACAAGAACAACTATCTTCCTGAAGTACCACAACCAGATCCACGTAGCCGTGTTTGTAAGAATCGAGAGTCTGCGAATACAAAAGGAGGAAGACAGACAATGAAGAAAGTGAAGAGGAATGGATCAAAGAAGACTCCTATGATTCAAGAAACGAACCATTTGACGCCTCCACACTCGGATGGATCGTTCTCGTCACCGTCGCCACACTATTTTCCGATGAATATGTCGAACGCGTCGACGCCAGAATTTGTGTATAATCCGGATATGGTAAGAATATCTTTTTCCAAAATTTGCTTT</canonical>
            <polymorphic>TCTCCATTGGATAGCTGGTAATTCGAATGGAAAACCGGAGGATCAGATTACATCAGAGTGTCTCAAGTGCCTGGACGCTGGAGCTGATGTCAATGCTCGGGACTTCAACGAGGACACCCCTCTGATGTTCGCGGTTCGTGCACGGCGAGTTCGCTTGGTGTCACTTATGATGAAACGAGGCGCGAATCCAACAATCTTCAATAAGTCCGAACGATCGGCTCTCCACGAAGCCACAGCTAACAGGGATGTTCGAATGATGACGAACTTGCTGAGGGATCCTCGAATGGTTGACGAGATTGACGAGTTGGATCGGAATGGACGAACGGCACTGATGATGACTGCTGGAGGTTTCGGTGGAACTGAAATGGCTGAGCTTCTGCTGAAAAAAGGAGCAAAGATAGACTGTGATGGATCGGAACGGAGGGATACGGATAAGTATCACGGAAGGACTGCGCTTCACTACGCAGCACTCTCGGATAACACGCAGATGGTCGATTTCYTGGTGACGATGAACTCGAATAAGGATAAGCAAGACGAGAAGGGAATGACGCCGATGATGTTGGCTGCGAAGGAAGGAAACTTGAAAAGTGTCAAGATTCTGGCGTGTCGAGGAGCGAGTGTCACCATTGTGGATGGTTTTGAGAAGACGGCCAGCCAATACGCTCAGGACGCTTTTCATCACGATGTTGTGGCGTTTTTGAGCAACAAGAACAACTATCTTCCTGAAGTACCACAACCAGATCCACGTAGCCGTGTTTGTAAGAATCGAGAGTCTGCGAATACAAAAGGAGGAAGACAGACAATGAAGAAAGTGAAGAGGAATGGATCAAAGAAGACTCCTATGATTCAAGAAACGAACCATTTGACGCCTCCACACTCGGATGGATCGTTCTCGTCACCGTCGCCACACTATTTTCCGATGAATATGTCGAACGCGTCGACGCCAGAATTTGTGTATAATCCGGATATGGTAAGAATATCTTTTTCCAAAATTTGCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>500 429 71</canonical_bands>
                <polymorphic_bands>929 71</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>500 429 71</canonical_bands>
                <polymorphic_bands>929 71</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGAGCAAAGATAGACTGTGA</pcr_primer_p1>
		<pcr_primer_p2>TTCTCAAAACCATCCACAAT</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>AAGGAGCAAAGATAGACTGTGATGGATCGGAACGGAGGGATACGGATAAGTATCACGGAAGGACTGCGCTTCACTACGCAGCACTCTCGGATAACACGCAGATGGTCGATTTCCTGGTGACGATGAACTCGAATAAGGATAAGCAAGACGAGAAGGGAATGACGCCGATGATGTTGGCTGCGAAGGAAGGAAACTTGAAAAGTGTCAAGATTCTGGCGTGTCGAGGAGCGAGTGTCACCATTGTGGATGGTTTTGAGAA</canonical_amplicon>
		<polymorphic_amplicon>AAGGAGCAAAGATAGACTGTGATGGATCGGAACGGAGGGATACGGATAAGTATCACGGAAGGACTGCGCTTCACTACGCAGCACTCTCGGATAACACGCAGATGGTCGATTTCYTGGTGACGATGAACTCGAATAAGGATAAGCAAGACGAGAAGGGAATGACGCCGATGATGTTGGCTGCGAAGGAAGGAAACTTGAAAAGTGTCAAGATTCTGGCGTGTCGAGGAGCGAGTGTCACCATTGTGGATGGTTTTGAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19791</snp_id>
        <super_contig>c012201017.Contig1</super_contig>
        <contig_pos>30854</contig_pos>
        <strand>+</strand>
        <context>GGAGAGATAA[A/G]GTAAAAAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAATTTTTCTCGTTAACAATATTTGGCAACGCCACCGTGGGAGAGATAA</left_flank>
        <right_flank>GTAAAAAAGAACAGTTGGCGCCGAAAAAAGGAAAGATGTTGTGCAATTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTGCCTTACTAATAGGACTTACTAATGAGATTAAAAACGAATGTACTCCTTCATCTTGCAAAGGGTATTAGCTTCATGTCTCTTTGTTCTCAGTATGCAAACACATACTCTGGAGCAAAACTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGTAAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATCGAAGGGTTCTCATTTCTGCGATTTCTCCTCTTTTCTCTGAACTACGGGACAGGCGTAAACGTCATTGACCTTCTTCTCTGCCGTTTCCTTTTAGCGCATCAGAATTTTTCTCGTTAACAATATTTGGCAACGCCACCGTGGGAGAGATAAGGTAAAAAAGAACAGTTGGCGCCGAAAAAAGGAAAGATGTTGTGCAATTTTCTGACCTTGATGGAAAAGGAAGATGAATTCGGCGAGATAACATCGAACCATATTTCAAACCAAATGATAAAAAATGACAGACGGAATGTTGAGGTGGAAGATTCAAACAAATCATTGGTAACAATAAAACGGAATTCAGCAAAAAATGCAAAAACCAAGGGAAAAACGAAATTCTATTGGGTGGTCACGATATAAAAAGGGGACATAAATGAAATCAAATTCTAGTTGAAATTCAAGCATAACTTACATGATAAAAATAGACAATGAACCTCACGATGAAATCAACTGGAATAAATCATTCGAATAAATTCTTAGACGATACTTGTTTATAAAATTAAACGAAAAAACAAAATATCATCCACTCGAAAAAAAAATAAAATCGAGGTTGATTTTTCGAAAGGGTACTCCGACCAAACATTTTTTATGGAACAAAATGTATAAAAATAGAAG</canonical>
            <polymorphic>CTTTGCCTTACTAATAGGACTTACTAATGAGATTAAAAACGAATGTACTCCTTCATCTTGCAAAGGGTATTAGCTTCATGTCTCTTTGTTCTCAGTATGCAAACACATACTCTGGAGCAAAACTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGTAAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATCGAAGGGTTCTCATTTCTGCGATTTCTCCTCTTTTCTCTGAACTACGGGACAGGCGTAAACGTCATTGACCTTCTTCTCTGCCGTTTCCTTTTAGCGCATCAGAATTTTTCTCGTTAACAATATTTGGCAACGCCACCGTGGGAGAGATAARGTAAAAAAGAACAGTTGGCGCCGAAAAAAGGAAAGATGTTGTGCAATTTTCTGACCTTGATGGAAAAGGAAGATGAATTCGGCGAGATAACATCGAACCATATTTCAAACCAAATGATAAAAAATGACAGACGGAATGTTGAGGTGGAAGATTCAAACAAATCATTGGTAACAATAAAACGGAATTCAGCAAAAAATGCAAAAACCAAGGGAAAAACGAAATTCTATTGGGTGGTCACGATATAAAAAGGGGACATAAATGAAATCAAATTCTAGTTGAAATTCAAGCATAACTTACATGATAAAAATAGACAATGAACCTCACGATGAAATCAACTGGAATAAATCATTCGAATAAATTCTTAGACGATACTTGTTTATAAAATTAAACGAAAAAACAAAATATCATCCACTCGAAAAAAAAATAAAATCGAGGTTGATTTTTCGAAAGGGTACTCCGACCAAACATTTTTTATGGAACAAAATGTATAAAAATAGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCTCCTCTTTTCTCTGAACT</pcr_primer_p1>
		<pcr_primer_p2>TATCATTTGGTTTGAAATATGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTCTCCTCTTTTCTCTGAACTACGGGACAGGCGTAAACGTCATTGACCTTCTTCTCTGCCGTTTCCTTTTAGCGCATCAGAATTTTTCTCGTTAACAATATTTGGCAACGCCACCGTGGGAGAGATAAGGTAAAAAAGAACAGTTGGCGCCGAAAAAAGGAAAGATGTTGTGCAATTTTCTGACCTTGATGGAAAAGGAAGATGAATTCGGCGAGATAACATCGAACCATATTTCAAACCAAATGATA</canonical_amplicon>
		<polymorphic_amplicon>ATTTCTCCTCTTTTCTCTGAACTACGGGACAGGCGTAAACGTCATTGACCTTCTTCTCTGCCGTTTCCTTTTAGCGCATCAGAATTTTTCTCGTTAACAATATTTGGCAACGCCACCGTGGGAGAGATAARGTAAAAAAGAACAGTTGGCGCCGAAAAAAGGAAAGATGTTGTGCAATTTTCTGACCTTGATGGAAAAGGAAGATGAATTCGGCGAGATAACATCGAACCATATTTCAAACCAAATGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19792</snp_id>
        <super_contig>c012201017.Contig1</super_contig>
        <contig_pos>30976</contig_pos>
        <strand>+</strand>
        <context>AAATGATAAA[A/T]AATGACAGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATGAATTCGGCGAGATAACATCGAACCATATTTCAAACCAAATGATAAA</left_flank>
        <right_flank>AATGACAGACGGAATGTTGAGGTGGAAGATTCAAACAAATCATTGGTAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGTAAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATCGAAGGGTTCTCATTTCTGCGATTTCTCCTCTTTTCTCTGAACTACGGGACAGGCGTAAACGTCATTGACCTTCTTCTCTGCCGTTTCCTTTTAGCGCATCAGAATTTTTCTCGTTAACAATATTTGGCAACGCCACCGTGGGAGAGATAAGGTAAAAAAGAACAGTTGGCGCCGAAAAAAGGAAAGATGTTGTGCAATTTTCTGACCTTGATGGAAAAGGAAGATGAATTCGGCGAGATAACATCGAACCATATTTCAAACCAAATGATAAAAAATGACAGACGGAATGTTGAGGTGGAAGATTCAAACAAATCATTGGTAACAATAAAACGGAATTCAGCAAAAAATGCAAAAACCAAGGGAAAAACGAAATTCTATTGGGTGGTCACGATATAAAAAGGGGACATAAATGAAATCAAATTCTAGTTGAAATTCAAGCATAACTTACATGATAAAAATAGACAATGAACCTCACGATGAAATCAACTGGAATAAATCATTCGAATAAATTCTTAGACGATACTTGTTTATAAAATTAAACGAAAAAACAAAATATCATCCACTCGAAAAAAAAATAAAATCGAGGTTGATTTTTCGAAAGGGTACTCCGACCAAACATTTTTTATGGAACAAAATGTATAAAAATAGAAGAACATTTAGGTTCATATAGAAGCAAAGAAATTTTTTTAGAAATTGCAAAACCTCAAAAAGTAGCTACAGAAGAAATAATATGTTCAGGTCCATTTTTGAAAACCAATTTTTTTGATTTACTG</canonical>
            <polymorphic>CTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGTAAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATCGAAGGGTTCTCATTTCTGCGATTTCTCCTCTTTTCTCTGAACTACGGGACAGGCGTAAACGTCATTGACCTTCTTCTCTGCCGTTTCCTTTTAGCGCATCAGAATTTTTCTCGTTAACAATATTTGGCAACGCCACCGTGGGAGAGATAAGGTAAAAAAGAACAGTTGGCGCCGAAAAAAGGAAAGATGTTGTGCAATTTTCTGACCTTGATGGAAAAGGAAGATGAATTCGGCGAGATAACATCGAACCATATTTCAAACCAAATGATAAAWAATGACAGACGGAATGTTGAGGTGGAAGATTCAAACAAATCATTGGTAACAATAAAACGGAATTCAGCAAAAAATGCAAAAACCAAGGGAAAAACGAAATTCTATTGGGTGGTCACGATATAAAAAGGGGACATAAATGAAATCAAATTCTAGTTGAAATTCAAGCATAACTTACATGATAAAAATAGACAATGAACCTCACGATGAAATCAACTGGAATAAATCATTCGAATAAATTCTTAGACGATACTTGTTTATAAAATTAAACGAAAAAACAAAATATCATCCACTCGAAAAAAAAATAAAATCGAGGTTGATTTTTCGAAAGGGTACTCCGACCAAACATTTTTTATGGAACAAAATGTATAAAAATAGAAGAACATTTAGGTTCATATAGAAGCAAAGAAATTTTTTTAGAAATTGCAAAACCTCAAAAAGTAGCTACAGAAGAAATAATATGTTCAGGTCCATTTTTGAAAACCAATTTTTTTGATTTACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTAGCGCATCAGAATTT</pcr_primer_p1>
		<pcr_primer_p2>CGTTTTATTGTTACCAATGATTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTTTTAGCGCATCAGAATTTTTCTCGTTAACAATATTTGGCAACGCCACCGTGGGAGAGATAAGGTAAAAAAGAACAGTTGGCGCCGAAAAAAGGAAAGATGTTGTGCAATTTTCTGACCTTGATGGAAAAGGAAGATGAATTCGGCGAGATAACATCGAACCATATTTCAAACCAAATGATAAAAAATGACAGACGGAATGTTGAGGTGGAAGATTCAAACAAATCATTGGTAACAATAAAACG</canonical_amplicon>
		<polymorphic_amplicon>CTTTTAGCGCATCAGAATTTTTCTCGTTAACAATATTTGGCAACGCCACCGTGGGAGAGATAAGGTAAAAAAGAACAGTTGGCGCCGAAAAAAGGAAAGATGTTGTGCAATTTTCTGACCTTGATGGAAAAGGAAGATGAATTCGGCGAGATAACATCGAACCATATTTCAAACCAAATGATAAAWAATGACAGACGGAATGTTGAGGTGGAAGATTCAAACAAATCATTGGTAACAATAAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19793</snp_id>
        <super_contig>c012201017.Contig1</super_contig>
        <contig_pos>31054</contig_pos>
        <strand>+</strand>
        <context>CAAAAAATGC[A/G]AAAACCAAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTCAAACAAATCATTGGTAACAATAAAACGGAATTCAGCAAAAAATGC</left_flank>
        <right_flank>AAAACCAAGGGAAAAACGAAATTCTATTGGGTGGTCACGATATAAAAAGG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATCGAAGGGTTCTCATTTCTGCGATTTCTCCTCTTTTCTCTGAACTACGGGACAGGCGTAAACGTCATTGACCTTCTTCTCTGCCGTTTCCTTTTAGCGCATCAGAATTTTTCTCGTTAACAATATTTGGCAACGCCACCGTGGGAGAGATAAGGTAAAAAAGAACAGTTGGCGCCGAAAAAAGGAAAGATGTTGTGCAATTTTCTGACCTTGATGGAAAAGGAAGATGAATTCGGCGAGATAACATCGAACCATATTTCAAACCAAATGATAAAAAATGACAGACGGAATGTTGAGGTGGAAGATTCAAACAAATCATTGGTAACAATAAAACGGAATTCAGCAAAAAATGCAAAAACCAAGGGAAAAACGAAATTCTATTGGGTGGTCACGATATAAAAAGGGGACATAAATGAAATCAAATTCTAGTTGAAATTCAAGCATAACTTACATGATAAAAATAGACAATGAACCTCACGATGAAATCAACTGGAATAAATCATTCGAATAAATTCTTAGACGATACTTGTTTATAAAATTAAACGAAAAAACAAAATATCATCCACTCGAAAAAAAAATAAAATCGAGGTTGATTTTTCGAAAGGGTACTCCGACCAAACATTTTTTATGGAACAAAATGTATAAAAATAGAAGAACATTTAGGTTCATATAGAAGCAAAGAAATTTTTTTAGAAATTGCAAAACCTCAAAAAGTAGCTACAGAAGAAATAATATGTTCAGGTCCATTTTTGAAAACCAATTTTTTTGATTTACTGTCATTGGCATGTTTGTGTCTTCGAGGTACCGAAAATTATTGTTCCTGGACTGATTCTGATATTGTTTTCATCTCAAAT</canonical>
            <polymorphic>CAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATCGAAGGGTTCTCATTTCTGCGATTTCTCCTCTTTTCTCTGAACTACGGGACAGGCGTAAACGTCATTGACCTTCTTCTCTGCCGTTTCCTTTTAGCGCATCAGAATTTTTCTCGTTAACAATATTTGGCAACGCCACCGTGGGAGAGATAAGGTAAAAAAGAACAGTTGGCGCCGAAAAAAGGAAAGATGTTGTGCAATTTTCTGACCTTGATGGAAAAGGAAGATGAATTCGGCGAGATAACATCGAACCATATTTCAAACCAAATGATAAAAAATGACAGACGGAATGTTGAGGTGGAAGATTCAAACAAATCATTGGTAACAATAAAACGGAATTCAGCAAAAAATGCRAAAACCAAGGGAAAAACGAAATTCTATTGGGTGGTCACGATATAAAAAGGGGACATAAATGAAATCAAATTCTAGTTGAAATTCAAGCATAACTTACATGATAAAAATAGACAATGAACCTCACGATGAAATCAACTGGAATAAATCATTCGAATAAATTCTTAGACGATACTTGTTTATAAAATTAAACGAAAAAACAAAATATCATCCACTCGAAAAAAAAATAAAATCGAGGTTGATTTTTCGAAAGGGTACTCCGACCAAACATTTTTTATGGAACAAAATGTATAAAAATAGAAGAACATTTAGGTTCATATAGAAGCAAAGAAATTTTTTTAGAAATTGCAAAACCTCAAAAAGTAGCTACAGAAGAAATAATATGTTCAGGTCCATTTTTGAAAACCAATTTTTTTGATTTACTGTCATTGGCATGTTTGTGTCTTCGAGGTACCGAAAATTATTGTTCCTGGACTGATTCTGATATTGTTTTCATCTCAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>347 343 155 155</canonical_bands>
                <polymorphic_bands>502 343 155</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCATATTTCAAACCAAATGAT</pcr_primer_p1>
		<pcr_primer_p2>TGATTTATTCCAGTTGATTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACCATATTTCAAACCAAATGATAAAAAATGACAGACGGAATGTTGAGGTGGAAGATTCAAACAAATCATTGGTAACAATAAAACGGAATTCAGCAAAAAATGCAAAAACCAAGGGAAAAACGAAATTCTATTGGGTGGTCACGATATAAAAAGGGGACATAAATGAAATCAAATTCTAGTTGAAATTCAAGCATAACTTACATGATAAAAATAGACAATGAACCTCACGATGAAATCAACTGGAATAAATCA</canonical_amplicon>
		<polymorphic_amplicon>ACCATATTTCAAACCAAATGATAAAAAATGACAGACGGAATGTTGAGGTGGAAGATTCAAACAAATCATTGGTAACAATAAAACGGAATTCAGCAAAAAATGCRAAAACCAAGGGAAAAACGAAATTCTATTGGGTGGTCACGATATAAAAAGGGGACATAAATGAAATCAAATTCTAGTTGAAATTCAAGCATAACTTACATGATAAAAATAGACAATGAACCTCACGATGAAATCAACTGGAATAAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19794</snp_id>
        <super_contig>c012201017.Contig1</super_contig>
        <contig_pos>33430</contig_pos>
        <strand>+</strand>
        <context>TTTCTGAAAC[G/T]CAGTAATCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTCATATTTCTCTCCTTTTTTATTTGTTCTGCAACTGTTTTCTGAAAC</left_flank>
        <right_flank>CAGTAATCATCATTCTTGTAATAAGTAAAAGAAGCGGTGTCTTTTTCTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTCTGCCACACTTCTTTTGCCTAATTGGACCAACAAAACTCTCTTGGAAAATGCTGGATCTGACCATTTGCAACCTTATAACACTCCCTCTTGTACAGGATCTTCAGAAGACATTTCAAATCAATATGATTCTGCTGTAGCAGTCTTGCTATCAACTCAGCCTCATTTGCCTTCTGGAACTTCTTCGTCCAACATTTCATTTCCCCTCGGACCAAGATCGTTTGCTGCTTTTTCCCCATTTTTTCCATCCAATTGCATTTTTCCTTTTGCACCACCAGGTAACTTCAAGTGATCCTTACTCCCACAAGTAGATAATCTAGCTAATCAGGAGAATATTGAAAATCCTGAACAAGACCTACAGTTGTAGGTCTGGACAACGTTACAATTATCAACTTCAATTGTAATCTCTGATTTTTCAGCTATCTCCTTTTTCTTCTATTTTATAATTTTCATATTTCTCTCCTTTTTTATTTGTTCTGCAACTGTTTTCTGAAACTCAGTAATCATCATTCTTGTAATAAGTAAAAGAAGCGGTGTCTTTTTCTTCTTTGTATGTCGTTCCTTTTTTTCCAGAGATTCTGTCTTGGAGTAAATCTTTCTTGATTCTCAGGCAAGATTTCAAAAAAGTGTAAACTAACAAAACACTGGTGATATTATCATGAACATTTAATTAGTTTACAACTTTTCGCCAGGCTCAAACTGCACATATAGGACAATAGTCTATTAACGAAAACACGGTGGTTTTGATTTTATCTGTGAAAACGTTTTTTGACCAAAACTTCAAAAATGAATCGACAACTTGTTTACTGTTTTTCGTTCTCTCTTTCCAATTCCCAAAGTGTGTCTTCTGCTATCCAACAAGACAAAAATTTGTCATTGTCACATTAAAAAAGTCACGAGCATTGGCATTCAGGCGGTTTCCAGGAGTGTTGCCATGAAACTACTCGAGTGGTCCGGGAGAGAACGACTTCATGCCGACATTTTCATTCTCAAAATT</canonical>
            <polymorphic>TTCTTCTGCCACACTTCTTTTGCCTAATTGGACCAACAAAACTCTCTTGGAAAATGCTGGATCTGACCATTTGCAACCTTATAACACTCCCTCTTGTACAGGATCTTCAGAAGACATTTCAAATCAATATGATTCTGCTGTAGCAGTCTTGCTATCAACTCAGCCTCATTTGCCTTCTGGAACTTCTTCGTCCAACATTTCATTTCCCCTCGGACCAAGATCGTTTGCTGCTTTTTCCCCATTTTTTCCATCCAATTGCATTTTTCCTTTTGCACCACCAGGTAACTTCAAGTGATCCTTACTCCCACAAGTAGATAATCTAGCTAATCAGGAGAATATTGAAAATCCTGAACAAGACCTACAGTTGTAGGTCTGGACAACGTTACAATTATCAACTTCAATTGTAATCTCTGATTTTTCAGCTATCTCCTTTTTCTTCTATTTTATAATTTTCATATTTCTCTCCTTTTTTATTTGTTCTGCAACTGTTTTCTGAAACKCAGTAATCATCATTCTTGTAATAAGTAAAAGAAGCGGTGTCTTTTTCTTCTTTGTATGTCGTTCCTTTTTTTCCAGAGATTCTGTCTTGGAGTAAATCTTTCTTGATTCTCAGGCAAGATTTCAAAAAAGTGTAAACTAACAAAACACTGGTGATATTATCATGAACATTTAATTAGTTTACAACTTTTCGCCAGGCTCAAACTGCACATATAGGACAATAGTCTATTAACGAAAACACGGTGGTTTTGATTTTATCTGTGAAAACGTTTTTTGACCAAAACTTCAAAAATGAATCGACAACTTGTTTACTGTTTTTCGTTCTCTCTTTCCAATTCCCAAAGTGTGTCTTCTGCTATCCAACAAGACAAAAATTTGTCATTGTCACATTAAAAAAGTCACGAGCATTGGCATTCAGGCGGTTTCCAGGAGTGTTGCCATGAAACTACTCGAGTGGTCCGGGAGAGAACGACTTCATGCCGACATTTTCATTCTCAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>391 340 159 110</canonical_bands>
                <polymorphic_bands>450 391 159</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTAATCAGGAGAATATTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAACGACATACAAAGAAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GCTAATCAGGAGAATATTGAAAATCCTGAACAAGACCTACAGTTGTAGGTCTGGACAACGTTACAATTATCAACTTCAATTGTAATCTCTGATTTTTCAGCTATCTCCTTTTTCTTCTATTTTATAATTTTCATATTTCTCTCCTTTTTTATTTGTTCTGCAACTGTTTTCTGAAACTCAGTAATCATCATTCTTGTAATAAGTAAAAGAAGCGGTGTCTTTTTCTTCTTTGTATGTCGTTC</canonical_amplicon>
		<polymorphic_amplicon>GCTAATCAGGAGAATATTGAAAATCCTGAACAAGACCTACAGTTGTAGGTCTGGACAACGTTACAATTATCAACTTCAATTGTAATCTCTGATTTTTCAGCTATCTCCTTTTTCTTCTATTTTATAATTTTCATATTTCTCTCCTTTTTTATTTGTTCTGCAACTGTTTTCTGAAACKCAGTAATCATCATTCTTGTAATAAGTAAAAGAAGCGGTGTCTTTTTCTTCTTTGTATGTCGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19795</snp_id>
        <super_contig>c012201017.Contig1</super_contig>
        <contig_pos>33406</contig_pos>
        <strand>+</strand>
        <context>CTTTTTTATT[C/T]GTTCTGCAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCCTTTTTCTTCTATTTTATAATTTTCATATTTCTCTCCTTTTTTATT</left_flank>
        <right_flank>GTTCTGCAACTGTTTTCTGAAACTCAGTAATCATCATTCTTGTAATAAGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAATTGGGCCAACTTCTTTTGCTTCTTCTGCCACACTTCTTTTGCCTAATTGGACCAACAAAACTCTCTTGGAAAATGCTGGATCTGACCATTTGCAACCTTATAACACTCCCTCTTGTACAGGATCTTCAGAAGACATTTCAAATCAATATGATTCTGCTGTAGCAGTCTTGCTATCAACTCAGCCTCATTTGCCTTCTGGAACTTCTTCGTCCAACATTTCATTTCCCCTCGGACCAAGATCGTTTGCTGCTTTTTCCCCATTTTTTCCATCCAATTGCATTTTTCCTTTTGCACCACCAGGTAACTTCAAGTGATCCTTACTCCCACAAGTAGATAATCTAGCTAATCAGGAGAATATTGAAAATCCTGAACAAGACCTACAGTTGTAGGTCTGGACAACGTTACAATTATCAACTTCAATTGTAATCTCTGATTTTTCAGCTATCTCCTTTTTCTTCTATTTTATAATTTTCATATTTCTCTCCTTTTTTATTTGTTCTGCAACTGTTTTCTGAAACTCAGTAATCATCATTCTTGTAATAAGTAAAAGAAGCGGTGTCTTTTTCTTCTTTGTATGTCGTTCCTTTTTTTCCAGAGATTCTGTCTTGGAGTAAATCTTTCTTGATTCTCAGGCAAGATTTCAAAAAAGTGTAAACTAACAAAACACTGGTGATATTATCATGAACATTTAATTAGTTTACAACTTTTCGCCAGGCTCAAACTGCACATATAGGACAATAGTCTATTAACGAAAACACGGTGGTTTTGATTTTATCTGTGAAAACGTTTTTTGACCAAAACTTCAAAAATGAATCGACAACTTGTTTACTGTTTTTCGTTCTCTCTTTCCAATTCCCAAAGTGTGTCTTCTGCTATCCAACAAGACAAAAATTTGTCATTGTCACATTAAAAAAGTCACGAGCATTGGCATTCAGGCGGTTTCCAGGAGTGTTGCCATGAAACTACTCGAGTGGTCCGGGAGAGAACGACTTCAT</canonical>
            <polymorphic>TCCAATTGGGCCAACTTCTTTTGCTTCTTCTGCCACACTTCTTTTGCCTAATTGGACCAACAAAACTCTCTTGGAAAATGCTGGATCTGACCATTTGCAACCTTATAACACTCCCTCTTGTACAGGATCTTCAGAAGACATTTCAAATCAATATGATTCTGCTGTAGCAGTCTTGCTATCAACTCAGCCTCATTTGCCTTCTGGAACTTCTTCGTCCAACATTTCATTTCCCCTCGGACCAAGATCGTTTGCTGCTTTTTCCCCATTTTTTCCATCCAATTGCATTTTTCCTTTTGCACCACCAGGTAACTTCAAGTGATCCTTACTCCCACAAGTAGATAATCTAGCTAATCAGGAGAATATTGAAAATCCTGAACAAGACCTACAGTTGTAGGTCTGGACAACGTTACAATTATCAACTTCAATTGTAATCTCTGATTTTTCAGCTATCTCCTTTTTCTTCTATTTTATAATTTTCATATTTCTCTCCTTTTTTATTYGTTCTGCAACTGTTTTCTGAAACTCAGTAATCATCATTCTTGTAATAAGTAAAAGAAGCGGTGTCTTTTTCTTCTTTGTATGTCGTTCCTTTTTTTCCAGAGATTCTGTCTTGGAGTAAATCTTTCTTGATTCTCAGGCAAGATTTCAAAAAAGTGTAAACTAACAAAACACTGGTGATATTATCATGAACATTTAATTAGTTTACAACTTTTCGCCAGGCTCAAACTGCACATATAGGACAATAGTCTATTAACGAAAACACGGTGGTTTTGATTTTATCTGTGAAAACGTTTTTTGACCAAAACTTCAAAAATGAATCGACAACTTGTTTACTGTTTTTCGTTCTCTCTTTCCAATTCCCAAAGTGTGTCTTCTGCTATCCAACAAGACAAAAATTTGTCATTGTCACATTAAAAAAGTCACGAGCATTGGCATTCAGGCGGTTTCCAGGAGTGTTGCCATGAAACTACTCGAGTGGTCCGGGAGAGAACGACTTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCCTTACTCCCACAAGTAGAT</pcr_primer_p1>
		<pcr_primer_p2>AGACACCGCTTCTTTTACTTATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATCCTTACTCCCACAAGTAGATAATCTAGCTAATCAGGAGAATATTGAAAATCCTGAACAAGACCTACAGTTGTAGGTCTGGACAACGTTACAATTATCAACTTCAATTGTAATCTCTGATTTTTCAGCTATCTCCTTTTTCTTCTATTTTATAATTTTCATATTTCTCTCCTTTTTTATTTGTTCTGCAACTGTTTTCTGAAACTCAGTAATCATCATTCTTGTAATAAGTAAAAGAAGCGGTGTCT</canonical_amplicon>
		<polymorphic_amplicon>GATCCTTACTCCCACAAGTAGATAATCTAGCTAATCAGGAGAATATTGAAAATCCTGAACAAGACCTACAGTTGTAGGTCTGGACAACGTTACAATTATCAACTTCAATTGTAATCTCTGATTTTTCAGCTATCTCCTTTTTCTTCTATTTTATAATTTTCATATTTCTCTCCTTTTTTATTYGTTCTGCAACTGTTTTCTGAAACTCAGTAATCATCATTCTTGTAATAAGTAAAAGAAGCGGTGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19796</snp_id>
        <super_contig>c012201017.Contig1</super_contig>
        <contig_pos>44554</contig_pos>
        <strand></strand>
        <context>ACCATTAGTT[C/A]MGATGGAGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GAGCGGGCAAAAAATGGATGAGGCTAGTGTTTTCTCTCTAACCATTAGTT</left_flank>
        <right_flank>AGATGGAGAGCTTATGTTAGAGAAAACGCATAATGCATTTGGCCGGCCCA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTAGAAACGCTTTATTCATCAATTTTCATTTAAATTCGCCATTTCCCGACTCCCCCATAAGATCGAGTTCATTTTCAACTTTATATGAAAACAATTACTTCCATTCTCAGGAACGTCCCCCAATTTTTTCTTTCCCGTTGTGTTTTATTTTTTCGTCCTCTCTCTTCGCTATCGATCCATCAGCACGGCAGATGGTGTTCATGACGTATACGTATGTGTGTGCGAGAAACAGTGGGGCAACGCGGCGAATGTCGCTCGCACACCCTATCTTCACCAGAAACGGCGGAAAATACCGTGCGGATTGAAGAGACACAGTTTCCTGTCGGGTCACTCGGGGCCTCTCGGTGGCTTAGTTCGAGTGTAGACATTGTGCGGAGGGAAGAAAGGCGAGAGAAGATAGAGGAAGAATTAGCATTCGCGTGGTGTGTAACACTAGCAGAAAAGAGCGAGCGGGCAAAAAATGGATGAGGCTAGTGTTTTCTCTCTAACCATTAGTTCAGATGGAGAGCTTATGTTAGAGAAAACGCATAATGCATTTGGCCGGCCCAGCACACAGCATCCCAGAGCGACAATTAACGGAAACCGCGCTCTGCTGTGAATACGGCTCCTATCTCCATAAACATTTCATTGGAAATCGCATTTTTGCTGTAATAGAGATAAAAAAATGTAATAGAGATAAAAAATAATAGAGATAAAAAAATAGTTGCCAGATTTGAATTTATTAAAACTCAGAAAAAAATTCGAACACGGATAAGATCAAGATCATCGTGAAAATGAAAATCTGTAATCAGAAATAAATTCAATTTCTTAATTAACGAATAAGATGAAATATAGAAGGTAGGGGGTTTGATTTCATAAGGGGAACAGGTGAAAAAAGTTACAGAAATTGAAGGAAAATAAAAATGAAAATAAAATCCAGGCATTTTCGAAACTGAAGAGTTGAAGAGAGGAAAATCAAATTTGCATTCAGTAACATTCCGAAAAGATTCAACGGATTT</canonical>
            <polymorphic>TTTTAGAAACGCTTTATTCATCAATTTTCATTTAAATTCGCCATTTCCCGACTCCCCCATAAGATCGAGTTCATTTTCAACTTTATATGAAAACAATTACTTCCATTCTCAGGAACGTCCCCCAATTTTTTCTTTCCCGTTGTGTTTTATTTTTTCGTCCTCTCTCTTCGCTATCGATCCATCAGCACGGCAGATGGTGTTCATGACGTATACGTATGTGTGTGCGAGAAACAGTGGGGCAACGCGGCGAATGTCGCTCGCACACCCTATCTTCACCAGAAACGGCGGAAAATACCGTGCGGATTGAAGAGACACAGTTTCCTGTCGGGTCACTCGGGGCCTCTCGGTGGCTTAGTTCGAGTGTAGACATTGTGCGGAGGGAAGAAAGGCGAGAGAAGATAGAGGAAGAATTAGCATTCGCGTGGTGTGTAACACTAGCAGAAAAGAGCGAGCGGGCAAAAAATGGATGAGGCTAGTGTTTTCTCTCTAACCATTAGTTMAGATGGAGAGCTTATGTTAGAGAAAACGCATAATGCATTTGGCCGGCCCAGCACACAGCATCCCAGAGCGACAATTAACGGAAACCGCGCTCTGCTGTGAATACGGCTCCTATCTCCATAAACATTTCATTGGAAATCGCATTTTTGCTGTAATAGAGATAAAAAAATGTAATAGAGATAAAAAATAATAGAGATAAAAAAATAGTTGCCAGATTTGAATTTATTAAAACTCAGAAAAAAATTCGAACACGGATAAGATCAAGATCATCGTGAAAATGAAAATCTGTAATCAGAAATAAATTCAATTTCTTAATTAACGAATAAGATGAAATATAGAAGGTAGGGGGTTTGATTTCATAAGGGGAACAGGTGAAAAAAGTTACAGAAATTGAAGGAAAATAAAAATGAAAATAAAATCCAGGCATTTTCGAAACTGAAGAGTTGAAGAGAGGAAAATCAAATTTGCATTCAGTAACATTCCGAAAAGATTCAACGGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>501 232 189 59 19</canonical_bands>
                <polymorphic_bands>733 189 59 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGAAAGGCGAGAGAAGATA</pcr_primer_p1>
		<pcr_primer_p2>TGAAATGTTTATGGAGATAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAGAAAGGCGAGAGAAGATAGAGGAAGAATTAGCATTCGCGTGGTGTGTAACACTAGCAGAAAAGAGCGAGCGGGCAAAAAATGGATGAGGCTAGTGTTTTCTCTCTAACCATTAGTTCAGATGGAGAGCTTATGTTAGAGAAAACGCATAATGCATTTGGCCGGCCCAGCACACAGCATCCCAGAGCGACAATTAACGGAAACCGCGCTCTGCTGTGAATACGGCTCCTATCTCCATAAACATTTCA</canonical_amplicon>
		<polymorphic_amplicon>GAAGAAAGGCGAGAGAAGATAGAGGAAGAATTAGCATTCGCGTGGTGTGTAACACTAGCAGAAAAGAGCGAGCGGGCAAAAAATGGATGAGGCTAGTGTTTTCTCTCTAACCATTAGTTMAGATGGAGAGCTTATGTTAGAGAAAACGCATAATGCATTTGGCCGGCCCAGCACACAGCATCCCAGAGCGACAATTAACGGAAACCGCGCTCTGCTGTGAATACGGCTCCTATCTCCATAAACATTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19797</snp_id>
        <super_contig>c012201017.Contig1</super_contig>
        <contig_pos>44511</contig_pos>
        <strand>+</strand>
        <context>AGCGAGCGGG[C/G]AAAAAATGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGAATTAGCATTCGCGTGGTGTGTAACACTAGCAGAAAAGAGCGAGCGGG</left_flank>
        <right_flank>AAAAAATGGATGAGGCTAGTGTTTTCTCTCTAACCATTAGTTCAGATGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCAAAAACAGAGAAAAGTTTACAACAAGTTTTCAAAATCTTATTTTAGAAACGCTTTATTCATCAATTTTCATTTAAATTCGCCATTTCCCGACTCCCCCATAAGATCGAGTTCATTTTCAACTTTATATGAAAACAATTACTTCCATTCTCAGGAACGTCCCCCAATTTTTTCTTTCCCGTTGTGTTTTATTTTTTCGTCCTCTCTCTTCGCTATCGATCCATCAGCACGGCAGATGGTGTTCATGACGTATACGTATGTGTGTGCGAGAAACAGTGGGGCAACGCGGCGAATGTCGCTCGCACACCCTATCTTCACCAGAAACGGCGGAAAATACCGTGCGGATTGAAGAGACACAGTTTCCTGTCGGGTCACTCGGGGCCTCTCGGTGGCTTAGTTCGAGTGTAGACATTGTGCGGAGGGAAGAAAGGCGAGAGAAGATAGAGGAAGAATTAGCATTCGCGTGGTGTGTAACACTAGCAGAAAAGAGCGAGCGGGCAAAAAATGGATGAGGCTAGTGTTTTCTCTCTAACCATTAGTTCAGATGGAGAGCTTATGTTAGAGAAAACGCATAATGCATTTGGCCGGCCCAGCACACAGCATCCCAGAGCGACAATTAACGGAAACCGCGCTCTGCTGTGAATACGGCTCCTATCTCCATAAACATTTCATTGGAAATCGCATTTTTGCTGTAATAGAGATAAAAAAATGTAATAGAGATAAAAAATAATAGAGATAAAAAAATAGTTGCCAGATTTGAATTTATTAAAACTCAGAAAAAAATTCGAACACGGATAAGATCAAGATCATCGTGAAAATGAAAATCTGTAATCAGAAATAAATTCAATTTCTTAATTAACGAATAAGATGAAATATAGAAGGTAGGGGGTTTGATTTCATAAGGGGAACAGGTGAAAAAAGTTACAGAAATTGAAGGAAAATAAAAATGAAAATAAAATCCAGGCATTTTCGAAACTGAAGAGTTGAAGAGAGGAAAAT</canonical>
            <polymorphic>CTCAAAAACAGAGAAAAGTTTACAACAAGTTTTCAAAATCTTATTTTAGAAACGCTTTATTCATCAATTTTCATTTAAATTCGCCATTTCCCGACTCCCCCATAAGATCGAGTTCATTTTCAACTTTATATGAAAACAATTACTTCCATTCTCAGGAACGTCCCCCAATTTTTTCTTTCCCGTTGTGTTTTATTTTTTCGTCCTCTCTCTTCGCTATCGATCCATCAGCACGGCAGATGGTGTTCATGACGTATACGTATGTGTGTGCGAGAAACAGTGGGGCAACGCGGCGAATGTCGCTCGCACACCCTATCTTCACCAGAAACGGCGGAAAATACCGTGCGGATTGAAGAGACACAGTTTCCTGTCGGGTCACTCGGGGCCTCTCGGTGGCTTAGTTCGAGTGTAGACATTGTGCGGAGGGAAGAAAGGCGAGAGAAGATAGAGGAAGAATTAGCATTCGCGTGGTGTGTAACACTAGCAGAAAAGAGCGAGCGGGSAAAAAATGGATGAGGCTAGTGTTTTCTCTCTAACCATTAGTTCAGATGGAGAGCTTATGTTAGAGAAAACGCATAATGCATTTGGCCGGCCCAGCACACAGCATCCCAGAGCGACAATTAACGGAAACCGCGCTCTGCTGTGAATACGGCTCCTATCTCCATAAACATTTCATTGGAAATCGCATTTTTGCTGTAATAGAGATAAAAAAATGTAATAGAGATAAAAAATAATAGAGATAAAAAAATAGTTGCCAGATTTGAATTTATTAAAACTCAGAAAAAAATTCGAACACGGATAAGATCAAGATCATCGTGAAAATGAAAATCTGTAATCAGAAATAAATTCAATTTCTTAATTAACGAATAAGATGAAATATAGAAGGTAGGGGGTTTGATTTCATAAGGGGAACAGGTGAAAAAAGTTACAGAAATTGAAGGAAAATAAAAATGAAAATAAAATCCAGGCATTTTCGAAACTGAAGAGTTGAAGAGAGGAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>413 301 192 90 4</canonical_bands>
                <polymorphic_bands>413 301 192 94</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGAAAGGCGAGAGAAGATA</pcr_primer_p1>
		<pcr_primer_p2>TGAAATGTTTATGGAGATAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAGAAAGGCGAGAGAAGATAGAGGAAGAATTAGCATTCGCGTGGTGTGTAACACTAGCAGAAAAGAGCGAGCGGGCAAAAAATGGATGAGGCTAGTGTTTTCTCTCTAACCATTAGTTCAGATGGAGAGCTTATGTTAGAGAAAACGCATAATGCATTTGGCCGGCCCAGCACACAGCATCCCAGAGCGACAATTAACGGAAACCGCGCTCTGCTGTGAATACGGCTCCTATCTCCATAAACATTTCA</canonical_amplicon>
		<polymorphic_amplicon>GAAGAAAGGCGAGAGAAGATAGAGGAAGAATTAGCATTCGCGTGGTGTGTAACACTAGCAGAAAAGAGCGAGCGGGSAAAAAATGGATGAGGCTAGTGTTTTCTCTCTAACCATTAGTTCAGATGGAGAGCTTATGTTAGAGAAAACGCATAATGCATTTGGCCGGCCCAGCACACAGCATCCCAGAGCGACAATTAACGGAAACCGCGCTCTGCTGTGAATACGGCTCCTATCTCCATAAACATTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19798</snp_id>
        <super_contig>c012201017.Contig1</super_contig>
        <contig_pos>44397</contig_pos>
        <strand>+</strand>
        <context>CTCGGGGCCT[C/T]TCGGTGGCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACCGTGCGGATTGAAGAGACACAGTTTCCTGTCGGGTCACTCGGGGCCT</left_flank>
        <right_flank>TCGGTGGCTTAGTTCGAGTGTAGACATTGTGCGGAGGGAAGAAAGGCGAG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACACGAATATATACTTTTTGATACAATCAATGAAAATTGAAATGTAAACTGCGTTGTCCAGAAAAGAGGATTCCCAGTTTTCAATATTTGTGAAATTTCAAGTAAATTTAGTTCTCAAAAACAGAGAAAAGTTTACAACAAGTTTTCAAAATCTTATTTTAGAAACGCTTTATTCATCAATTTTCATTTAAATTCGCCATTTCCCGACTCCCCCATAAGATCGAGTTCATTTTCAACTTTATATGAAAACAATTACTTCCATTCTCAGGAACGTCCCCCAATTTTTTCTTTCCCGTTGTGTTTTATTTTTTCGTCCTCTCTCTTCGCTATCGATCCATCAGCACGGCAGATGGTGTTCATGACGTATACGTATGTGTGTGCGAGAAACAGTGGGGCAACGCGGCGAATGTCGCTCGCACACCCTATCTTCACCAGAAACGGCGGAAAATACCGTGCGGATTGAAGAGACACAGTTTCCTGTCGGGTCACTCGGGGCCTCTCGGTGGCTTAGTTCGAGTGTAGACATTGTGCGGAGGGAAGAAAGGCGAGAGAAGATAGAGGAAGAATTAGCATTCGCGTGGTGTGTAACACTAGCAGAAAAGAGCGAGCGGGCAAAAAATGGATGAGGCTAGTGTTTTCTCTCTAACCATTAGTTCAGATGGAGAGCTTATGTTAGAGAAAACGCATAATGCATTTGGCCGGCCCAGCACACAGCATCCCAGAGCGACAATTAACGGAAACCGCGCTCTGCTGTGAATACGGCTCCTATCTCCATAAACATTTCATTGGAAATCGCATTTTTGCTGTAATAGAGATAAAAAAATGTAATAGAGATAAAAAATAATAGAGATAAAAAAATAGTTGCCAGATTTGAATTTATTAAAACTCAGAAAAAAATTCGAACACGGATAAGATCAAGATCATCGTGAAAATGAAAATCTGTAATCAGAAATAAATTCAATTTCTTAATTAACGAATAAGATGAAATATAGAAGGTAG</canonical>
            <polymorphic>AACACGAATATATACTTTTTGATACAATCAATGAAAATTGAAATGTAAACTGCGTTGTCCAGAAAAGAGGATTCCCAGTTTTCAATATTTGTGAAATTTCAAGTAAATTTAGTTCTCAAAAACAGAGAAAAGTTTACAACAAGTTTTCAAAATCTTATTTTAGAAACGCTTTATTCATCAATTTTCATTTAAATTCGCCATTTCCCGACTCCCCCATAAGATCGAGTTCATTTTCAACTTTATATGAAAACAATTACTTCCATTCTCAGGAACGTCCCCCAATTTTTTCTTTCCCGTTGTGTTTTATTTTTTCGTCCTCTCTCTTCGCTATCGATCCATCAGCACGGCAGATGGTGTTCATGACGTATACGTATGTGTGTGCGAGAAACAGTGGGGCAACGCGGCGAATGTCGCTCGCACACCCTATCTTCACCAGAAACGGCGGAAAATACCGTGCGGATTGAAGAGACACAGTTTCCTGTCGGGTCACTCGGGGCCTYTCGGTGGCTTAGTTCGAGTGTAGACATTGTGCGGAGGGAAGAAAGGCGAGAGAAGATAGAGGAAGAATTAGCATTCGCGTGGTGTGTAACACTAGCAGAAAAGAGCGAGCGGGCAAAAAATGGATGAGGCTAGTGTTTTCTCTCTAACCATTAGTTCAGATGGAGAGCTTATGTTAGAGAAAACGCATAATGCATTTGGCCGGCCCAGCACACAGCATCCCAGAGCGACAATTAACGGAAACCGCGCTCTGCTGTGAATACGGCTCCTATCTCCATAAACATTTCATTGGAAATCGCATTTTTGCTGTAATAGAGATAAAAAAATGTAATAGAGATAAAAAATAATAGAGATAAAAAAATAGTTGCCAGATTTGAATTTATTAAAACTCAGAAAAAAATTCGAACACGGATAAGATCAAGATCATCGTGAAAATGAAAATCTGTAATCAGAAATAAATTCAATTTCTTAATTAACGAATAAGATGAAATATAGAAGGTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACCCTATCTTCACCAGAAA</pcr_primer_p1>
		<pcr_primer_p2>AATGGTTAGAGAGAAAACACTAGC</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>ACACCCTATCTTCACCAGAAACGGCGGAAAATACCGTGCGGATTGAAGAGACACAGTTTCCTGTCGGGTCACTCGGGGCCTCTCGGTGGCTTAGTTCGAGTGTAGACATTGTGCGGAGGGAAGAAAGGCGAGAGAAGATAGAGGAAGAATTAGCATTCGCGTGGTGTGTAACACTAGCAGAAAAGAGCGAGCGGGCAAAAAATGGATGAGGCTAGTGTTTTCTCTCTAACCATT</canonical_amplicon>
		<polymorphic_amplicon>ACACCCTATCTTCACCAGAAACGGCGGAAAATACCGTGCGGATTGAAGAGACACAGTTTCCTGTCGGGTCACTCGGGGCCTYTCGGTGGCTTAGTTCGAGTGTAGACATTGTGCGGAGGGAAGAAAGGCGAGAGAAGATAGAGGAAGAATTAGCATTCGCGTGGTGTGTAACACTAGCAGAAAAGAGCGAGCGGGCAAAAAATGGATGAGGCTAGTGTTTTCTCTCTAACCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19799</snp_id>
        <super_contig>c012201017.Contig1</super_contig>
        <contig_pos>44073</contig_pos>
        <strand>+</strand>
        <context>ACGCTTTATT[C/T]ATCAATTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAAAGTTTACAACAAGTTTTCAAAATCTTATTTTAGAAACGCTTTATT</left_flank>
        <right_flank>ATCAATTTTCATTTAAATTCGCCATTTCCCGACTCCCCCATAAGATCGAG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGAACTTCCAGTTCGTACGCTATTTTGTTGATAACAAAATTGCGAAACGGTCCATGTTTAACTGTTTTATCAAGTTTGCTAGTTCTCAAAGATGAAGTTAATGACCTGTTAGAGATCTAAAACCTAGATAAATCAGTCACTCTGGAAAAATCACTCAAAAAGCGTGAAAAACGGACAAAAATTCACTTGTTTTCATAATATAGTAGTTCTATCATAATTGCGTTTATGTTTATTTTCGGTTTTTTAAAACTTTTTCATCCAAAAATGTTTATTGTTGGAAAGTGCGTAATTGTCTGTCTCAAACTTGAGTTTTAAGCTTTTCAACACGAATATATACTTTTTGATACAATCAATGAAAATTGAAATGTAAACTGCGTTGTCCAGAAAAGAGGATTCCCAGTTTTCAATATTTGTGAAATTTCAAGTAAATTTAGTTCTCAAAAACAGAGAAAAGTTTACAACAAGTTTTCAAAATCTTATTTTAGAAACGCTTTATTCATCAATTTTCATTTAAATTCGCCATTTCCCGACTCCCCCATAAGATCGAGTTCATTTTCAACTTTATATGAAAACAATTACTTCCATTCTCAGGAACGTCCCCCAATTTTTTCTTTCCCGTTGTGTTTTATTTTTTCGTCCTCTCTCTTCGCTATCGATCCATCAGCACGGCAGATGGTGTTCATGACGTATACGTATGTGTGTGCGAGAAACAGTGGGGCAACGCGGCGAATGTCGCTCGCACACCCTATCTTCACCAGAAACGGCGGAAAATACCGTGCGGATTGAAGAGACACAGTTTCCTGTCGGGTCACTCGGGGCCTCTCGGTGGCTTAGTTCGAGTGTAGACATTGTGCGGAGGGAAGAAAGGCGAGAGAAGATAGAGGAAGAATTAGCATTCGCGTGGTGTGTAACACTAGCAGAAAAGAGCGAGCGGGCAAAAAATGGATGAGGCTAGTGTTTTCTCTCTAACCATTAGTTCAGATGGAGAGCTTATGTTA</canonical>
            <polymorphic>ACAGAACTTCCAGTTCGTACGCTATTTTGTTGATAACAAAATTGCGAAACGGTCCATGTTTAACTGTTTTATCAAGTTTGCTAGTTCTCAAAGATGAAGTTAATGACCTGTTAGAGATCTAAAACCTAGATAAATCAGTCACTCTGGAAAAATCACTCAAAAAGCGTGAAAAACGGACAAAAATTCACTTGTTTTCATAATATAGTAGTTCTATCATAATTGCGTTTATGTTTATTTTCGGTTTTTTAAAACTTTTTCATCCAAAAATGTTTATTGTTGGAAAGTGCGTAATTGTCTGTCTCAAACTTGAGTTTTAAGCTTTTCAACACGAATATATACTTTTTGATACAATCAATGAAAATTGAAATGTAAACTGCGTTGTCCAGAAAAGAGGATTCCCAGTTTTCAATATTTGTGAAATTTCAAGTAAATTTAGTTCTCAAAAACAGAGAAAAGTTTACAACAAGTTTTCAAAATCTTATTTTAGAAACGCTTTATTYATCAATTTTCATTTAAATTCGCCATTTCCCGACTCCCCCATAAGATCGAGTTCATTTTCAACTTTATATGAAAACAATTACTTCCATTCTCAGGAACGTCCCCCAATTTTTTCTTTCCCGTTGTGTTTTATTTTTTCGTCCTCTCTCTTCGCTATCGATCCATCAGCACGGCAGATGGTGTTCATGACGTATACGTATGTGTGTGCGAGAAACAGTGGGGCAACGCGGCGAATGTCGCTCGCACACCCTATCTTCACCAGAAACGGCGGAAAATACCGTGCGGATTGAAGAGACACAGTTTCCTGTCGGGTCACTCGGGGCCTCTCGGTGGCTTAGTTCGAGTGTAGACATTGTGCGGAGGGAAGAAAGGCGAGAGAAGATAGAGGAAGAATTAGCATTCGCGTGGTGTGTAACACTAGCAGAAAAGAGCGAGCGGGCAAAAAATGGATGAGGCTAGTGTTTTCTCTCTAACCATTAGTTCAGATGGAGAGCTTATGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTAAGCTTTTCAACACGAATA</pcr_primer_p1>
		<pcr_primer_p2>TTGAAAATGAACTCGATCTTATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTAAGCTTTTCAACACGAATATATACTTTTTGATACAATCAATGAAAATTGAAATGTAAACTGCGTTGTCCAGAAAAGAGGATTCCCAGTTTTCAATATTTGTGAAATTTCAAGTAAATTTAGTTCTCAAAAACAGAGAAAAGTTTACAACAAGTTTTCAAAATCTTATTTTAGAAACGCTTTATTCATCAATTTTCATTTAAATTCGCCATTTCCCGACTCCCCCATAAGATCGAGTTCATTTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTAAGCTTTTCAACACGAATATATACTTTTTGATACAATCAATGAAAATTGAAATGTAAACTGCGTTGTCCAGAAAAGAGGATTCCCAGTTTTCAATATTTGTGAAATTTCAAGTAAATTTAGTTCTCAAAAACAGAGAAAAGTTTACAACAAGTTTTCAAAATCTTATTTTAGAAACGCTTTATTYATCAATTTTCATTTAAATTCGCCATTTCCCGACTCCCCCATAAGATCGAGTTCATTTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19800</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>35024</contig_pos>
        <strand>+</strand>
        <context>AGATCCAAAA[A/C]CGGTGCATCG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATGGTCCGACGGTCGTCCATGGATCTTCGTACCGCCTCTAGATCCAAAA</left_flank>
        <right_flank>CGGTGCATCGAAAGCCGAATTGGGAGAAAAAGTCTTATGTAAGGCTGAAA</right_flank>
        <qual_score>151</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCAAAAATTGACCAAAAATAATCAAAACTCGCTGAAAAATACATAAATATTGGCTCAGTGTTTCTTCAGTGTAAATCTCGAAAATCGTCAAAAACAAAGTGAAAATGTTCCGAAAATATGCTTAATTCTAAAAAAGTCCAGAAAAAAACGACGAAAATTGACCGAAAACTGCAATTTTGGTGCTGCTCAGCAGTAGCAAAATGGGATTTGGTACTGCTAAGCAGTAGCAAAATCCGAATTTACTACTGCTAAGCAGTAGCAAAAATGGGATTTGGTACTGCTTAGCAGTAGCAAAATTCAATTTTACACCTGCGAAGCAGTAGCAAAACGAGAATTTGCTGCTTCGCAGTAGCAAAATCTCAATTAGCAGTACCAAAATCGCTTGTTTTCCAGATCTACACAGGCTACAAAGGTGCCACACGTCTTCCATTCGCCATCATCACTTACTCATGGTCCGACGGTCGTCCATGGATCTTCGTACCGCCTCTAGATCCAAAACCGGTGCATCGAAAGCCGAATTGGGAGAAAAAGTCTTATGTAAGGCTGAAAATTCGGCCTTTTTTAACCATTTCCCCTCTAAATTCCGAAATTTCAGGAAAAAGTGAACATGACGAGTATGCCTCAGATGGTGTCCGCGTTCTACGAAGGCTTCAACATCTATTCCCATTGTATTGTCAGTTTCGACGAGGCCGCTGCGATTATGCTGGGTGCCACGTTGGTGGATGCAAACAAGTTTGTGTGGTTTTTGTAGTCTTTGTAGTCAAGTCTGAAACTTTCCAGACTATGCTCATCGGTCCCCCTTGGCTATAGACAGAATGGAACATTTGTAATCGACCTGAAAAAGATGGGTTACTGTCTATTGGAGCTCCGTCGGGATGACAATGGTCTCTGGACGAAGCCATCGGGTTTCAGCCGTTTCTACAAGTTGGCTGAAAATGGAGACGCGTTGAGAGTGGATAAGGCGGGAAAACTGCCAGCTGGCGTGGATTTTGATGTGAA</canonical>
            <polymorphic>CTCAAAAATTGACCAAAAATAATCAAAACTCGCTGAAAAATACATAAATATTGGCTCAGTGTTTCTTCAGTGTAAATCTCGAAAATCGTCAAAAACAAAGTGAAAATGTTCCGAAAATATGCTTAATTCTAAAAAAGTCCAGAAAAAAACGACGAAAATTGACCGAAAACTGCAATTTTGGTGCTGCTCAGCAGTAGCAAAATGGGATTTGGTACTGCTAAGCAGTAGCAAAATCCGAATTTACTACTGCTAAGCAGTAGCAAAAATGGGATTTGGTACTGCTTAGCAGTAGCAAAATTCAATTTTACACCTGCGAAGCAGTAGCAAAACGAGAATTTGCTGCTTCGCAGTAGCAAAATCTCAATTAGCAGTACCAAAATCGCTTGTTTTCCAGATCTACACAGGCTACAAAGGTGCCACACGTCTTCCATTCGCCATCATCACTTACTCATGGTCCGACGGTCGTCCATGGATCTTCGTACCGCCTCTAGATCCAAAAMCGGTGCATCGAAAGCCGAATTGGGAGAAAAAGTCTTATGTAAGGCTGAAAATTCGGCCTTTTTTAACCATTTCCCCTCTAAATTCCGAAATTTCAGGAAAAAGTGAACATGACGAGTATGCCTCAGATGGTGTCCGCGTTCTACGAAGGCTTCAACATCTATTCCCATTGTATTGTCAGTTTCGACGAGGCCGCTGCGATTATGCTGGGTGCCACGTTGGTGGATGCAAACAAGTTTGTGTGGTTTTTGTAGTCTTTGTAGTCAAGTCTGAAACTTTCCAGACTATGCTCATCGGTCCCCCTTGGCTATAGACAGAATGGAACATTTGTAATCGACCTGAAAAAGATGGGTTACTGTCTATTGGAGCTCCGTCGGGATGACAATGGTCTCTGGACGAAGCCATCGGGTTTCAGCCGTTTCTACAAGTTGGCTGAAAATGGAGACGCGTTGAGAGTGGATAAGGCGGGAAAACTGCCAGCTGGCGTGGATTTTGATGTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACCGGT</site>
                <isoschizomers>
                    <enzyme>AgeI</enzyme>
                    <enzyme>AsiAI</enzyme>
                    <enzyme>BshTI</enzyme>
                    <enzyme>CspAI</enzyme>
                    <enzyme>PinAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGCCATCATCACTTACTCAT</pcr_primer_p1>
		<pcr_primer_p2>AAACTGACAATACAATGGGAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGCCATCATCACTTACTCATGGTCCGACGGTCGTCCATGGATCTTCGTACCGCCTCTAGATCCAAAACCGGTGCATCGAAAGCCGAATTGGGAGAAAAAGTCTTATGTAAGGCTGAAAATTCGGCCTTTTTTAACCATTTCCCCTCTAAATTCCGAAATTTCAGGAAAAAGTGAACATGACGAGTATGCCTCAGATGGTGTCCGCGTTCTACGAAGGCTTCAACATCTATTCCCATTGTATTGTCAGTTT</canonical_amplicon>
		<polymorphic_amplicon>CGCCATCATCACTTACTCATGGTCCGACGGTCGTCCATGGATCTTCGTACCGCCTCTAGATCCAAAAMCGGTGCATCGAAAGCCGAATTGGGAGAAAAAGTCTTATGTAAGGCTGAAAATTCGGCCTTTTTTAACCATTTCCCCTCTAAATTCCGAAATTTCAGGAAAAAGTGAACATGACGAGTATGCCTCAGATGGTGTCCGCGTTCTACGAAGGCTTCAACATCTATTCCCATTGTATTGTCAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19801</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>35123</contig_pos>
        <strand>+</strand>
        <context>AATTTCAGGA[A/C]AAAGTGAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATTCGGCCTTTTTTAACCATTTCCCCTCTAAATTCCGAAATTTCAGGA</left_flank>
        <right_flank>AAAGTGAACATGACGAGTATGCCTCAGATGGTGTCCGCGTTCTACGAAGG</right_flank>
        <qual_score>145</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGAAAATGTTCCGAAAATATGCTTAATTCTAAAAAAGTCCAGAAAAAAACGACGAAAATTGACCGAAAACTGCAATTTTGGTGCTGCTCAGCAGTAGCAAAATGGGATTTGGTACTGCTAAGCAGTAGCAAAATCCGAATTTACTACTGCTAAGCAGTAGCAAAAATGGGATTTGGTACTGCTTAGCAGTAGCAAAATTCAATTTTACACCTGCGAAGCAGTAGCAAAACGAGAATTTGCTGCTTCGCAGTAGCAAAATCTCAATTAGCAGTACCAAAATCGCTTGTTTTCCAGATCTACACAGGCTACAAAGGTGCCACACGTCTTCCATTCGCCATCATCACTTACTCATGGTCCGACGGTCGTCCATGGATCTTCGTACCGCCTCTAGATCCAAAACCGGTGCATCGAAAGCCGAATTGGGAGAAAAAGTCTTATGTAAGGCTGAAAATTCGGCCTTTTTTAACCATTTCCCCTCTAAATTCCGAAATTTCAGGAAAAAGTGAACATGACGAGTATGCCTCAGATGGTGTCCGCGTTCTACGAAGGCTTCAACATCTATTCCCATTGTATTGTCAGTTTCGACGAGGCCGCTGCGATTATGCTGGGTGCCACGTTGGTGGATGCAAACAAGTTTGTGTGGTTTTTGTAGTCTTTGTAGTCAAGTCTGAAACTTTCCAGACTATGCTCATCGGTCCCCCTTGGCTATAGACAGAATGGAACATTTGTAATCGACCTGAAAAAGATGGGTTACTGTCTATTGGAGCTCCGTCGGGATGACAATGGTCTCTGGACGAAGCCATCGGGTTTCAGCCGTTTCTACAAGTTGGCTGAAAATGGAGACGCGTTGAGAGTGGATAAGGCGGGAAAACTGCCAGCTGGCGTGGATTTTGATGTGAAAATTAGCTCGAAACGATATGAAAACACCCAGGTTGAGAAGAAATTCGTCAGAAAGATCTATACGGCGAAGGGGAAGACGTCGGATACGTTCCCCGGGTC</canonical>
            <polymorphic>GTGAAAATGTTCCGAAAATATGCTTAATTCTAAAAAAGTCCAGAAAAAAACGACGAAAATTGACCGAAAACTGCAATTTTGGTGCTGCTCAGCAGTAGCAAAATGGGATTTGGTACTGCTAAGCAGTAGCAAAATCCGAATTTACTACTGCTAAGCAGTAGCAAAAATGGGATTTGGTACTGCTTAGCAGTAGCAAAATTCAATTTTACACCTGCGAAGCAGTAGCAAAACGAGAATTTGCTGCTTCGCAGTAGCAAAATCTCAATTAGCAGTACCAAAATCGCTTGTTTTCCAGATCTACACAGGCTACAAAGGTGCCACACGTCTTCCATTCGCCATCATCACTTACTCATGGTCCGACGGTCGTCCATGGATCTTCGTACCGCCTCTAGATCCAAAACCGGTGCATCGAAAGCCGAATTGGGAGAAAAAGTCTTATGTAAGGCTGAAAATTCGGCCTTTTTTAACCATTTCCCCTCTAAATTCCGAAATTTCAGGAMAAAGTGAACATGACGAGTATGCCTCAGATGGTGTCCGCGTTCTACGAAGGCTTCAACATCTATTCCCATTGTATTGTCAGTTTCGACGAGGCCGCTGCGATTATGCTGGGTGCCACGTTGGTGGATGCAAACAAGTTTGTGTGGTTTTTGTAGTCTTTGTAGTCAAGTCTGAAACTTTCCAGACTATGCTCATCGGTCCCCCTTGGCTATAGACAGAATGGAACATTTGTAATCGACCTGAAAAAGATGGGTTACTGTCTATTGGAGCTCCGTCGGGATGACAATGGTCTCTGGACGAAGCCATCGGGTTTCAGCCGTTTCTACAAGTTGGCTGAAAATGGAGACGCGTTGAGAGTGGATAAGGCGGGAAAACTGCCAGCTGGCGTGGATTTTGATGTGAAAATTAGCTCGAAACGATATGAAAACACCCAGGTTGAGAAGAAATTCGTCAGAAAGATCTATACGGCGAAGGGGAAGACGTCGGATACGTTCCCCGGGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGGGAGAAAAAGTCTTATGT</pcr_primer_p1>
		<pcr_primer_p2>AAAGACTACAAAAACCACACAAA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AATTGGGAGAAAAAGTCTTATGTAAGGCTGAAAATTCGGCCTTTTTTAACCATTTCCCCTCTAAATTCCGAAATTTCAGGAAAAAGTGAACATGACGAGTATGCCTCAGATGGTGTCCGCGTTCTACGAAGGCTTCAACATCTATTCCCATTGTATTGTCAGTTTCGACGAGGCCGCTGCGATTATGCTGGGTGCCACGTTGGTGGATGCAAACAAGTTTGTGTGGTTTTTGTAGTCTTT</canonical_amplicon>
		<polymorphic_amplicon>AATTGGGAGAAAAAGTCTTATGTAAGGCTGAAAATTCGGCCTTTTTTAACCATTTCCCCTCTAAATTCCGAAATTTCAGGAMAAAGTGAACATGACGAGTATGCCTCAGATGGTGTCCGCGTTCTACGAAGGCTTCAACATCTATTCCCATTGTATTGTCAGTTTCGACGAGGCCGCTGCGATTATGCTGGGTGCCACGTTGGTGGATGCAAACAAGTTTGTGTGGTTTTTGTAGTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19802</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>35324</contig_pos>
        <strand>+</strand>
        <context>CATCGGTCCC[A/C]CTTGGCTATA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAGTCTTTGTAGTCAAGTCTGAAACTTTCCAGACTATGCTCATCGGTCCC</left_flank>
        <right_flank>CTTGGCTATAGACAGAATGGAACATTTGTAATCGACCTGAAAAAGATGGG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTACACCTGCGAAGCAGTAGCAAAACGAGAATTTGCTGCTTCGCAGTAGCAAAATCTCAATTAGCAGTACCAAAATCGCTTGTTTTCCAGATCTACACAGGCTACAAAGGTGCCACACGTCTTCCATTCGCCATCATCACTTACTCATGGTCCGACGGTCGTCCATGGATCTTCGTACCGCCTCTAGATCCAAAACCGGTGCATCGAAAGCCGAATTGGGAGAAAAAGTCTTATGTAAGGCTGAAAATTCGGCCTTTTTTAACCATTTCCCCTCTAAATTCCGAAATTTCAGGAAAAAGTGAACATGACGAGTATGCCTCAGATGGTGTCCGCGTTCTACGAAGGCTTCAACATCTATTCCCATTGTATTGTCAGTTTCGACGAGGCCGCTGCGATTATGCTGGGTGCCACGTTGGTGGATGCAAACAAGTTTGTGTGGTTTTTGTAGTCTTTGTAGTCAAGTCTGAAACTTTCCAGACTATGCTCATCGGTCCCCCTTGGCTATAGACAGAATGGAACATTTGTAATCGACCTGAAAAAGATGGGTTACTGTCTATTGGAGCTCCGTCGGGATGACAATGGTCTCTGGACGAAGCCATCGGGTTTCAGCCGTTTCTACAAGTTGGCTGAAAATGGAGACGCGTTGAGAGTGGATAAGGCGGGAAAACTGCCAGCTGGCGTGGATTTTGATGTGAAAATTAGCTCGAAACGATATGAAAACACCCAGGTTGAGAAGAAATTCGTCAGAAAGATCTATACGGCGAAGGGGAAGACGTCGGATACGTTCCCCGGGTCTCCAGAATACGCTGTCATCGTCTATTACTGGAAAGGAGAGCCAATTCAATTTGAGCCGATTTATAAGCAGAATGCAGTGAGGACAGAGGCCAAGGAATACGCTAGATATCAGCAAATGGAGGAGGAGGAGCAGGAGTTTGTGGAGACGTCGGGACCACCCATGCAAATTTTGGGAGCGGAGGAGGAGATGATTGAGAAGTA</canonical>
            <polymorphic>AATTTTACACCTGCGAAGCAGTAGCAAAACGAGAATTTGCTGCTTCGCAGTAGCAAAATCTCAATTAGCAGTACCAAAATCGCTTGTTTTCCAGATCTACACAGGCTACAAAGGTGCCACACGTCTTCCATTCGCCATCATCACTTACTCATGGTCCGACGGTCGTCCATGGATCTTCGTACCGCCTCTAGATCCAAAACCGGTGCATCGAAAGCCGAATTGGGAGAAAAAGTCTTATGTAAGGCTGAAAATTCGGCCTTTTTTAACCATTTCCCCTCTAAATTCCGAAATTTCAGGAAAAAGTGAACATGACGAGTATGCCTCAGATGGTGTCCGCGTTCTACGAAGGCTTCAACATCTATTCCCATTGTATTGTCAGTTTCGACGAGGCCGCTGCGATTATGCTGGGTGCCACGTTGGTGGATGCAAACAAGTTTGTGTGGTTTTTGTAGTCTTTGTAGTCAAGTCTGAAACTTTCCAGACTATGCTCATCGGTCCCMCTTGGCTATAGACAGAATGGAACATTTGTAATCGACCTGAAAAAGATGGGTTACTGTCTATTGGAGCTCCGTCGGGATGACAATGGTCTCTGGACGAAGCCATCGGGTTTCAGCCGTTTCTACAAGTTGGCTGAAAATGGAGACGCGTTGAGAGTGGATAAGGCGGGAAAACTGCCAGCTGGCGTGGATTTTGATGTGAAAATTAGCTCGAAACGATATGAAAACACCCAGGTTGAGAAGAAATTCGTCAGAAAGATCTATACGGCGAAGGGGAAGACGTCGGATACGTTCCCCGGGTCTCCAGAATACGCTGTCATCGTCTATTACTGGAAAGGAGAGCCAATTCAATTTGAGCCGATTTATAAGCAGAATGCAGTGAGGACAGAGGCCAAGGAATACGCTAGATATCAGCAAATGGAGGAGGAGGAGCAGGAGTTTGTGGAGACGTCGGGACCACCCATGCAAATTTTGGGAGCGGAGGAGGAGATGATTGAGAAGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>333 227 167 111 97 64 1</canonical_bands>
                <polymorphic_bands>560 167 111 97 64 1</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>389 333 167 111</canonical_bands>
                <polymorphic_bands>722 167 111</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTATGCCTCAGATGGTGT</pcr_primer_p1>
		<pcr_primer_p2>CAATAGACAGTAACCCATCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGTATGCCTCAGATGGTGTCCGCGTTCTACGAAGGCTTCAACATCTATTCCCATTGTATTGTCAGTTTCGACGAGGCCGCTGCGATTATGCTGGGTGCCACGTTGGTGGATGCAAACAAGTTTGTGTGGTTTTTGTAGTCTTTGTAGTCAAGTCTGAAACTTTCCAGACTATGCTCATCGGTCCCCCTTGGCTATAGACAGAATGGAACATTTGTAATCGACCTGAAAAAGATGGGTTACTGTCTATTG</canonical_amplicon>
		<polymorphic_amplicon>GAGTATGCCTCAGATGGTGTCCGCGTTCTACGAAGGCTTCAACATCTATTCCCATTGTATTGTCAGTTTCGACGAGGCCGCTGCGATTATGCTGGGTGCCACGTTGGTGGATGCAAACAAGTTTGTGTGGTTTTTGTAGTCTTTGTAGTCAAGTCTGAAACTTTCCAGACTATGCTCATCGGTCCCMCTTGGCTATAGACAGAATGGAACATTTGTAATCGACCTGAAAAAGATGGGTTACTGTCTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19803</snp_id>
        <super_contig>c012300976.Contig2</super_contig>
        <contig_pos>10840</contig_pos>
        <strand>+</strand>
        <context>GTGCCCATTG[A/T]GAGCGTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTGAAAAATTCATTGATGAATTACTCTTGTTCGAAATCAGTGCCCATTG</left_flank>
        <right_flank>GAGCGTTTTTATTGTTAAAGGCGCATTTGAATGCACAAGAGCGAATTACA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCCCCAAATGAGTCAATGGATCTGAATAAATTAGACCCTTCTTCAAACCATTTTCAAGCAGTAATAATTTTTTGATTGATGAGTTTACAAAATTTCTCGAAAACCTTAAAACACATATCTTTTCAACTTTGAGCCAATTTATCTCGGTTCCTGTCAAAGATATTAAAAAGTTGTCAACTGATTGTGAGAAATTTTTTATCACAATATAAGAAGTATTTTGTCAGTTGCAACATTTTTAATATCCTGCATAGGAAGTGAGATAATTGAGGTCAAACTTGATAGTGTCTATTAAATATTATATTAAATAGTATTCTATTAAAGGGTTTTACTGTAACTCAAAGTTCTGGAATTTTTTTAACGAAATTTTCAAATATGTATTCTTCAAACTGTATTGAACAAAATTGTAAGTTTTTTTAAGTATTCAATAATACATTTGAAACCGAAAATTTCTGAAAAATTCATTGATGAATTACTCTTGTTCGAAATCAGTGCCCATTGTGAGCGTTTTTATTGTTAAAGGCGCATTTGAATGCACAAGAGCGAATTACAGTACTTTTGAGCCTATTTTGAATATTATTTTCTTATTTTCTCAAATTTCCGATGATTTTATTCCAATTTTTTCCGTTTCACTTGATAAAACGATGAAAAGCTTTCAAAAGTTGAGAGAATAGAAAAGTAATATTAAAAACAGGCTCAAAGGATATAGCAGTTCGCTCTTGTGCCTTTCAGAAAAAATTTATGAAGGTATCCGCTCTCAATGCGCACTGATTTCCGACAACAGTAATACCAATCTTCGAGCAAAGTGGGCATCAAACTTGGATGAAAAGTTTCAAATTAATCTGAATAAGTTTGGAAAGCTTTGGAAATCATGTTGAAACAGTGGTAGGTTTTATGATGGTTACATTTTCCTAGTTTCTCGAATACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATANNNNNNNNNNCCCAGTCTCCTCTTG</canonical>
            <polymorphic>GTCCCCAAATGAGTCAATGGATCTGAATAAATTAGACCCTTCTTCAAACCATTTTCAAGCAGTAATAATTTTTTGATTGATGAGTTTACAAAATTTCTCGAAAACCTTAAAACACATATCTTTTCAACTTTGAGCCAATTTATCTCGGTTCCTGTCAAAGATATTAAAAAGTTGTCAACTGATTGTGAGAAATTTTTTATCACAATATAAGAAGTATTTTGTCAGTTGCAACATTTTTAATATCCTGCATAGGAAGTGAGATAATTGAGGTCAAACTTGATAGTGTCTATTAAATATTATATTAAATAGTATTCTATTAAAGGGTTTTACTGTAACTCAAAGTTCTGGAATTTTTTTAACGAAATTTTCAAATATGTATTCTTCAAACTGTATTGAACAAAATTGTAAGTTTTTTTAAGTATTCAATAATACATTTGAAACCGAAAATTTCTGAAAAATTCATTGATGAATTACTCTTGTTCGAAATCAGTGCCCATTGWGAGCGTTTTTATTGTTAAAGGCGCATTTGAATGCACAAGAGCGAATTACAGTACTTTTGAGCCTATTTTGAATATTATTTTCTTATTTTCTCAAATTTCCGATGATTTTATTCCAATTTTTTCCGTTTCACTTGATAAAACGATGAAAAGCTTTCAAAAGTTGAGAGAATAGAAAAGTAATATTAAAAACAGGCTCAAAGGATATAGCAGTTCGCTCTTGTGCCTTTCAGAAAAAATTTATGAAGGTATCCGCTCTCAATGCGCACTGATTTCCGACAACAGTAATACCAATCTTCGAGCAAAGTGGGCATCAAACTTGGATGAAAAGTTTCAAATTAATCTGAATAAGTTTGGAAAGCTTTGGAAATCATGTTGAAACAGTGGTAGGTTTTATGATGGTTACATTTTCCTAGTTTCTCGAATACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATANNNNNNNNNNCCCAGTCTCCTCTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>207 114 95 92 77 73 66 56 43 41 38 34 27 15 13 9</canonical_bands>
                <polymorphic_bands>207 114 95 92 77 73 66 56 43 43 41 38 27 15 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGGGTTTTACTGTAACTCAAAG</pcr_primer_p1>
		<pcr_primer_p2>TCAAAAGTACTGTAATTCGCTCT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AAAGGGTTTTACTGTAACTCAAAGTTCTGGAATTTTTTTAACGAAATTTTCAAATATGTATTCTTCAAACTGTATTGAACAAAATTGTAAGTTTTTTTAAGTATTCAATAATACATTTGAAACCGAAAATTTCTGAAAAATTCATTGATGAATTACTCTTGTTCGAAATCAGTGCCCATTGTGAGCGTTTTTATTGTTAAAGGCGCATTTGAATGCACAAGAGCGAATTACAGTACTTTTGA</canonical_amplicon>
		<polymorphic_amplicon>AAAGGGTTTTACTGTAACTCAAAGTTCTGGAATTTTTTTAACGAAATTTTCAAATATGTATTCTTCAAACTGTATTGAACAAAATTGTAAGTTTTTTTAAGTATTCAATAATACATTTGAAACCGAAAATTTCTGAAAAATTCATTGATGAATTACTCTTGTTCGAAATCAGTGCCCATTGWGAGCGTTTTTATTGTTAAAGGCGCATTTGAATGCACAAGAGCGAATTACAGTACTTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19804</snp_id>
        <super_contig>c012300976.Contig2</super_contig>
        <contig_pos>13127</contig_pos>
        <strand>+</strand>
        <context>AAAGACATTG[A/C]ACATTTGTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTGGTTTCTGTTTCAAATTGCTCCGCTTAAAAAATCTTGAAAGACATTG</left_flank>
        <right_flank>ACATTTGTATACGGTAATAGTAAATGTTTGTAGCAAGAACCACAATGAAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGTTATGGAAATTAATTTGCGAACACAAAAGGGAAACACGAATATTTTGAGATGTCTACAACTAGTCAACGATTGAAATTGAAAAAAAGTGGATGTTAAAATCGAACATTTGAAACAGGAAAAAATATCAAAAAACCACAGACATACACCAAAGTGTCAAATTTATCGAATTTGTGCTGGAATTTTTGTAAAAATTAGAAATTTCATAAAACTGAAATCTTAACAATTTCTGGACATTTAAAAAAATTGCAAGAAGCATCAAAACTATATTTTCCAAGAATTAATTATTACCTTGAAAAAACAATAATAAATTGTTCCTGAATTTCTATAGGAAAATAATATTAAACTGAAAATTCAAGAAATTTCTAGATGAGCGGAAAATTTGGATACTGTAGTTTTAAAAATGGGTATCCTAGGTACCCCTAAAAATTGCTCATTTCTGTTGAAAATTGGTTTCTGTTTCAAATTGCTCCGCTTAAAAAATCTTGAAAGACATTGCACATTTGTATACGGTAATAGTAAATGTTTGTAGCAAGAACCACAATGAAATTTGTTAGAGGTCTAATGTGACAGATTCGAAACATCAGATTTAAAAAAACAGAAACATAAAACATATATACTGTAAAACATGTAATAGAACGCCCATACACTGTCAAGTGTCAGCTCAAATATCTCGTTCCCTGCAAAAGGAATCAAAAAGCGATCAACTGACAAAATTTTTATCATGATATAAGAAATAATTTATCAGTTGACCACTTTTTAATAACTTTCCCAGAAAATGAGACAACTTGGCTCAAAGTAAAAATTAAGGGAGAGGAACGGGTTATTCTATTAGAGTGTTTGCTGCATTTTATCCCGTTAAAAATGAAACAGTTTAGTCAAATGATCAAGTGACAAGAACTACAAAGGGTTTAGTTAGAAGTTTCATATGTCAGATGTGAAACAGAAACCTTTGATTTAACAGAAAAAACATGAATTTTCTTTTAATTGATTCGATAT</canonical>
            <polymorphic>GCGTTATGGAAATTAATTTGCGAACACAAAAGGGAAACACGAATATTTTGAGATGTCTACAACTAGTCAACGATTGAAATTGAAAAAAAGTGGATGTTAAAATCGAACATTTGAAACAGGAAAAAATATCAAAAAACCACAGACATACACCAAAGTGTCAAATTTATCGAATTTGTGCTGGAATTTTTGTAAAAATTAGAAATTTCATAAAACTGAAATCTTAACAATTTCTGGACATTTAAAAAAATTGCAAGAAGCATCAAAACTATATTTTCCAAGAATTAATTATTACCTTGAAAAAACAATAATAAATTGTTCCTGAATTTCTATAGGAAAATAATATTAAACTGAAAATTCAAGAAATTTCTAGATGAGCGGAAAATTTGGATACTGTAGTTTTAAAAATGGGTATCCTAGGTACCCCTAAAAATTGCTCATTTCTGTTGAAAATTGGTTTCTGTTTCAAATTGCTCCGCTTAAAAAATCTTGAAAGACATTGMACATTTGTATACGGTAATAGTAAATGTTTGTAGCAAGAACCACAATGAAATTTGTTAGAGGTCTAATGTGACAGATTCGAAACATCAGATTTAAAAAAACAGAAACATAAAACATATATACTGTAAAACATGTAATAGAACGCCCATACACTGTCAAGTGTCAGCTCAAATATCTCGTTCCCTGCAAAAGGAATCAAAAAGCGATCAACTGACAAAATTTTTATCATGATATAAGAAATAATTTATCAGTTGACCACTTTTTAATAACTTTCCCAGAAAATGAGACAACTTGGCTCAAAGTAAAAATTAAGGGAGAGGAACGGGTTATTCTATTAGAGTGTTTGCTGCATTTTATCCCGTTAAAAATGAAACAGTTTAGTCAAATGATCAAGTGACAAGAACTACAAAGGGTTTAGTTAGAAGTTTCATATGTCAGATGTGAAACAGAAACCTTTGATTTAACAGAAAAAACATGAATTTTCTTTTAATTGATTCGATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>250 249 185 163 153</canonical_bands>
                <polymorphic_bands>434 250 163 153</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>324 96 84 80 59 54 53 47 47 41 28 26 20 13 10 10 8</canonical_bands>
                <polymorphic_bands>365 96 84 80 59 54 53 47 47 28 26 20 13 10 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTCTAGATGAGCGGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TAAATCTGATGTTTCGAATCTGT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>AATTTCTAGATGAGCGGAAAATTTGGATACTGTAGTTTTAAAAATGGGTATCCTAGGTACCCCTAAAAATTGCTCATTTCTGTTGAAAATTGGTTTCTGTTTCAAATTGCTCCGCTTAAAAAATCTTGAAAGACATTGCACATTTGTATACGGTAATAGTAAATGTTTGTAGCAAGAACCACAATGAAATTTGTTAGAGGTCTAATGTGACAGATTCGAAACATCAGATTTA</canonical_amplicon>
		<polymorphic_amplicon>AATTTCTAGATGAGCGGAAAATTTGGATACTGTAGTTTTAAAAATGGGTATCCTAGGTACCCCTAAAAATTGCTCATTTCTGTTGAAAATTGGTTTCTGTTTCAAATTGCTCCGCTTAAAAAATCTTGAAAGACATTGMACATTTGTATACGGTAATAGTAAATGTTTGTAGCAAGAACCACAATGAAATTTGTTAGAGGTCTAATGTGACAGATTCGAAACATCAGATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19805</snp_id>
        <super_contig>c012300976.Contig2</super_contig>
        <contig_pos>12823</contig_pos>
        <strand>+</strand>
        <context>TTTGTAAAAA[G/T]TAGAAATTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TACACCAAAGTGTCAAATTTATCGAATTTGTGCTGGAATTTTTGTAAAAA</left_flank>
        <right_flank>TAGAAATTTCATAAAACTGAAATCTTAACAATTTCTGGACATTTAAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGTGAAGTAAGCCTTCGGGGACTCTTTTAATATATCAGTAGAAAGAGCTTAGTTGCCGTTTTGTCCCCCTTCTGAGGTTGCCAATTATGGATACCTCACCTAAAGTAGTGTAGAGATGGCAGGTGGTGTTCAGGGCTCGATGAGCCGGTATAATGCCTTGAAGGGTATTTGGTAGAAGTGGACGAGAGACACATGTACATATTATTTGGGAGGGGACCATCACAGTTGATGAAGAGAGACAGAGGATAGACAGAAGGTATAAGGTCTATGGAATTGGTGATGAGTAGGATACACAGGAACAATGCGTTATGGAAATTAATTTGCGAACACAAAAGGGAAACACGAATATTTTGAGATGTCTACAACTAGTCAACGATTGAAATTGAAAAAAAGTGGATGTTAAAATCGAACATTTGAAACAGGAAAAAATATCAAAAAACCACAGACATACACCAAAGTGTCAAATTTATCGAATTTGTGCTGGAATTTTTGTAAAAATTAGAAATTTCATAAAACTGAAATCTTAACAATTTCTGGACATTTAAAAAAATTGCAAGAAGCATCAAAACTATATTTTCCAAGAATTAATTATTACCTTGAAAAAACAATAATAAATTGTTCCTGAATTTCTATAGGAAAATAATATTAAACTGAAAATTCAAGAAATTTCTAGATGAGCGGAAAATTTGGATACTGTAGTTTTAAAAATGGGTATCCTAGGTACCCCTAAAAATTGCTCATTTCTGTTGAAAATTGGTTTCTGTTTCAAATTGCTCCGCTTAAAAAATCTTGAAAGACATTGCACATTTGTATACGGTAATAGTAAATGTTTGTAGCAAGAACCACAATGAAATTTGTTAGAGGTCTAATGTGACAGATTCGAAACATCAGATTTAAAAAAACAGAAACATAAAACATATATACTGTAAAACATGTAATAGAACGCCCATACACTGTCAAGTGTCAGCTCAAATATCTCGTTCCCTGCAAAAGGAATCA</canonical>
            <polymorphic>GTGTGAAGTAAGCCTTCGGGGACTCTTTTAATATATCAGTAGAAAGAGCTTAGTTGCCGTTTTGTCCCCCTTCTGAGGTTGCCAATTATGGATACCTCACCTAAAGTAGTGTAGAGATGGCAGGTGGTGTTCAGGGCTCGATGAGCCGGTATAATGCCTTGAAGGGTATTTGGTAGAAGTGGACGAGAGACACATGTACATATTATTTGGGAGGGGACCATCACAGTTGATGAAGAGAGACAGAGGATAGACAGAAGGTATAAGGTCTATGGAATTGGTGATGAGTAGGATACACAGGAACAATGCGTTATGGAAATTAATTTGCGAACACAAAAGGGAAACACGAATATTTTGAGATGTCTACAACTAGTCAACGATTGAAATTGAAAAAAAGTGGATGTTAAAATCGAACATTTGAAACAGGAAAAAATATCAAAAAACCACAGACATACACCAAAGTGTCAAATTTATCGAATTTGTGCTGGAATTTTTGTAAAAAKTAGAAATTTCATAAAACTGAAATCTTAACAATTTCTGGACATTTAAAAAAATTGCAAGAAGCATCAAAACTATATTTTCCAAGAATTAATTATTACCTTGAAAAAACAATAATAAATTGTTCCTGAATTTCTATAGGAAAATAATATTAAACTGAAAATTCAAGAAATTTCTAGATGAGCGGAAAATTTGGATACTGTAGTTTTAAAAATGGGTATCCTAGGTACCCCTAAAAATTGCTCATTTCTGTTGAAAATTGGTTTCTGTTTCAAATTGCTCCGCTTAAAAAATCTTGAAAGACATTGCACATTTGTATACGGTAATAGTAAATGTTTGTAGCAAGAACCACAATGAAATTTGTTAGAGGTCTAATGTGACAGATTCGAAACATCAGATTTAAAAAAACAGAAACATAAAACATATATACTGTAAAACATGTAATAGAACGCCCATACACTGTCAAGTGTCAGCTCAAATATCTCGTTCCCTGCAAAAGGAATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>189 148 83 83 83 63 48 42 34 31 27 25 20 20 19 17 12 12 11 9 9 7 4 4</canonical_bands>
                <polymorphic_bands>189 148 83 83 83 63 48 42 34 31 27 25 20 20 19 19 17 12 11 9 9 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAACACGAATATTTTGAGATGT</pcr_primer_p1>
		<pcr_primer_p2>GGAAAATATAGTTTTGATGCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GAAACACGAATATTTTGAGATGTCTACAACTAGTCAACGATTGAAATTGAAAAAAAGTGGATGTTAAAATCGAACATTTGAAACAGGAAAAAATATCAAAAAACCACAGACATACACCAAAGTGTCAAATTTATCGAATTTGTGCTGGAATTTTTGTAAAAATTAGAAATTTCATAAAACTGAAATCTTAACAATTTCTGGACATTTAAAAAAATTGCAAGAAGCATCAAAACTATATTTTCC</canonical_amplicon>
		<polymorphic_amplicon>GAAACACGAATATTTTGAGATGTCTACAACTAGTCAACGATTGAAATTGAAAAAAAGTGGATGTTAAAATCGAACATTTGAAACAGGAAAAAATATCAAAAAACCACAGACATACACCAAAGTGTCAAATTTATCGAATTTGTGCTGGAATTTTTGTAAAAAKTAGAAATTTCATAAAACTGAAATCTTAACAATTTCTGGACATTTAAAAAAATTGCAAGAAGCATCAAAACTATATTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19806</snp_id>
        <super_contig>c012301175.Contig1</super_contig>
        <contig_pos>105129</contig_pos>
        <strand>+</strand>
        <context>TCCAAAACTT[C/T]CAAAACCTAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGCATCCGCATGTGCCTTTATTCCCACAGAACCTAACTTCCAAAACTT</left_flank>
        <right_flank>CAAAACCTACCTAGCTAGCTCTATTACCGATTTCTTCTCTCCCCATTATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTACATTCTTTCACATATTTTTTTGTTTACTGTCTCTTTTTTTCAGAATTCTACGAAAACTTTGATTCTTTTTTCCTTCCAAGTTCATTGGGTACCCACTAGACAAAAACACCTCATTCAAAACTATTTCCGTTTCTCTTTTTCGTTCAAAGCGTTTTTTCAGTCAAAAAAGTTTTCTTTTGAAAATCTGATTTAGTTCTCACTATTTTTCTTATTAAACTAAAACAAAAATCGTTTCACCGTCAATGAGTCAAGTGCATAGAAAATTGAATGTCAGGGTTTCTGGATGGGAAATAAGGATTTTGTTTAGAACTTTTTTATGAGAGAACAATAATTTCAACGATATCCTAATCCAATTTTAAGAATTAACGAACTTCCAGACCACAAGCATCTCTGTTATCATTAATAGAAACTGAGCAGACAGGCTCGTTGACATTAAGGTGCATTGTTTGCATCCGCATGTGCCTTTATTCCCACAGAACCTAACTTCCAAAACTTCCAAAACCTACCTAGCTAGCTCTATTACCGATTTCTTCTCTCCCCATTATTATTGTTTTATGTTTTTTGATGTAAGAAGAAGAAACCTGAGATTTATGTTTGCTCAAAAAAGACAGAATTGGTTGTTGGAATCAATTCAAAAATCTCAAAAAAACGAAGGGACGCGTCCAGAAGAAAAAAAACAACTGAAGATAAAGAAGATAGCGGCGTAAAACTTCAAAAAGAAACTGAAAAATAGGGGGGAGAAGGGATTAAGAAGAACTTAACGTTGTCTGCCAGTTTTCCTCCATTTCTTTGCCCAAAAAGTTATACGTTCCAGTCTCGCTATGTTTTTCTATTTTTCTGTTTGGGTGGCTCAGAGATTATTTGATAAATCTTTAAATCTGAAAGCGAATTCCCAGTTTCCTCTTCTTCGAACACATAAAGAATTCTGGTTGTTTTGAAACAAACCAATCTTTGTCCCCAATTCATTTACGGAGTTATTTATTCGCAGAGTGCAGT</canonical>
            <polymorphic>TGTACATTCTTTCACATATTTTTTTGTTTACTGTCTCTTTTTTTCAGAATTCTACGAAAACTTTGATTCTTTTTTCCTTCCAAGTTCATTGGGTACCCACTAGACAAAAACACCTCATTCAAAACTATTTCCGTTTCTCTTTTTCGTTCAAAGCGTTTTTTCAGTCAAAAAAGTTTTCTTTTGAAAATCTGATTTAGTTCTCACTATTTTTCTTATTAAACTAAAACAAAAATCGTTTCACCGTCAATGAGTCAAGTGCATAGAAAATTGAATGTCAGGGTTTCTGGATGGGAAATAAGGATTTTGTTTAGAACTTTTTTATGAGAGAACAATAATTTCAACGATATCCTAATCCAATTTTAAGAATTAACGAACTTCCAGACCACAAGCATCTCTGTTATCATTAATAGAAACTGAGCAGACAGGCTCGTTGACATTAAGGTGCATTGTTTGCATCCGCATGTGCCTTTATTCCCACAGAACCTAACTTCCAAAACTTYCAAAACCTACCTAGCTAGCTCTATTACCGATTTCTTCTCTCCCCATTATTATTGTTTTATGTTTTTTGATGTAAGAAGAAGAAACCTGAGATTTATGTTTGCTCAAAAAAGACAGAATTGGTTGTTGGAATCAATTCAAAAATCTCAAAAAAACGAAGGGACGCGTCCAGAAGAAAAAAAACAACTGAAGATAAAGAAGATAGCGGCGTAAAACTTCAAAAAGAAACTGAAAAATAGGGGGGAGAAGGGATTAAGAAGAACTTAACGTTGTCTGCCAGTTTTCCTCCATTTCTTTGCCCAAAAAGTTATACGTTCCAGTCTCGCTATGTTTTTCTATTTTTCTGTTTGGGTGGCTCAGAGATTATTTGATAAATCTTTAAATCTGAAAGCGAATTCCCAGTTTCCTCTTCTTCGAACACATAAAGAATTCTGGTTGTTTTGAAACAAACCAATCTTTGTCCCCAATTCATTTACGGAGTTATTTATTCGCAGAGTGCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACGATATCCTAATCCAATTT</pcr_primer_p1>
		<pcr_primer_p2>CAGGTTTCTTCTTCTTACATCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAACGATATCCTAATCCAATTTTAAGAATTAACGAACTTCCAGACCACAAGCATCTCTGTTATCATTAATAGAAACTGAGCAGACAGGCTCGTTGACATTAAGGTGCATTGTTTGCATCCGCATGTGCCTTTATTCCCACAGAACCTAACTTCCAAAACTTCCAAAACCTACCTAGCTAGCTCTATTACCGATTTCTTCTCTCCCCATTATTATTGTTTTATGTTTTTTGATGTAAGAAGAAGAAACCTG</canonical_amplicon>
		<polymorphic_amplicon>CAACGATATCCTAATCCAATTTTAAGAATTAACGAACTTCCAGACCACAAGCATCTCTGTTATCATTAATAGAAACTGAGCAGACAGGCTCGTTGACATTAAGGTGCATTGTTTGCATCCGCATGTGCCTTTATTCCCACAGAACCTAACTTCCAAAACTTYCAAAACCTACCTAGCTAGCTCTATTACCGATTTCTTCTCTCCCCATTATTATTGTTTTATGTTTTTTGATGTAAGAAGAAGAAACCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19807</snp_id>
        <super_contig>c012301175.Contig1</super_contig>
        <contig_pos>126740</contig_pos>
        <strand>+</strand>
        <context>ATGGGTATGA[A/C]ATTTCAGAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTCTCAAGCCGACAGCTTCGTGCTTGGTTAATCTCACCGAATGGGTATGA</left_flank>
        <right_flank>ATTTCAGAGAAACTGTGACTTCAATCGCCTTTTTTCAGCCACCATTCATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACACTAATGGTTTCAGGTTAGATTGCAGAATTTTGACATTGATGACACAAAATCAAATTTTACAGATACACTTCTCTTCGAGGAGATCGTATTGATGTGCTTTATAATAATATCAAGCATGCGTTCTTCCAACCGTGTGATAATGAGATGATCATTCTCCTTCATTTCCATCTCAAGAATCCGGTCATGTGGGGAAAGAAAAAGTACAAAGATGTTCAGTTCTACACCGAAGTCGGAGAGATCACGACAGATCTTGGAAAGTATCACCATATGCAAGATCGTGATGATATGCACAGTGAACAACAAGAACGAGAACTTCGTCGTCGTCTGAATACCACTTTCAACAGTTTCTGTGAGAAAGTGTCCCGTCTGACCAATGATCAGTTTGAATTCGATTCCCCATTTGCTGGGCTTGGCTTTTTCGGAGTTCCCTTCCGTTCAGCGACTACTCTCAAGCCGACAGCTTCGTGCTTGGTTAATCTCACCGAATGGGTATGACATTTCAGAGAAACTGTGACTTCAATCGCCTTTTTTCAGCCACCATTCATCGTCACTCTTTCCGAAGTGGAGCTTGTTCACTTCGAACGTGTTTCGTTGCAACTCAAGAATTTCGATATGGTTTTTATTTTCAAAGATTACAAAATGAAGACCCAAATGGTTGCTCAAATTCCGATGAGCAGTATCGACAAGATTAAAGAGTGGCTCCACACTTGTGACATTTGGTACAGCGAAGGAATTCAGTCTCTCAATTGGGCCAAGGTTATGAAGACTATCACTGACGATCCTGAAGACTTCTTCGAGAACGGTGGATGGACCTTCCTCGACGCTGAATCAGAGGGTGAAGACGCAGGCGACGATTCTGATGAATCCGATGCTTATGACCCAGAAGAAGCAGATGCATCCGATGGTGGTTCAAGCAGTGCTAGCGATGAAGATGAAAGCGAGGGCGAAGAAACTGAATCTGACGATGACGAGGAAGGTTCGTTGGATTCTGATGAA</canonical>
            <polymorphic>CACACTAATGGTTTCAGGTTAGATTGCAGAATTTTGACATTGATGACACAAAATCAAATTTTACAGATACACTTCTCTTCGAGGAGATCGTATTGATGTGCTTTATAATAATATCAAGCATGCGTTCTTCCAACCGTGTGATAATGAGATGATCATTCTCCTTCATTTCCATCTCAAGAATCCGGTCATGTGGGGAAAGAAAAAGTACAAAGATGTTCAGTTCTACACCGAAGTCGGAGAGATCACGACAGATCTTGGAAAGTATCACCATATGCAAGATCGTGATGATATGCACAGTGAACAACAAGAACGAGAACTTCGTCGTCGTCTGAATACCACTTTCAACAGTTTCTGTGAGAAAGTGTCCCGTCTGACCAATGATCAGTTTGAATTCGATTCCCCATTTGCTGGGCTTGGCTTTTTCGGAGTTCCCTTCCGTTCAGCGACTACTCTCAAGCCGACAGCTTCGTGCTTGGTTAATCTCACCGAATGGGTATGAMATTTCAGAGAAACTGTGACTTCAATCGCCTTTTTTCAGCCACCATTCATCGTCACTCTTTCCGAAGTGGAGCTTGTTCACTTCGAACGTGTTTCGTTGCAACTCAAGAATTTCGATATGGTTTTTATTTTCAAAGATTACAAAATGAAGACCCAAATGGTTGCTCAAATTCCGATGAGCAGTATCGACAAGATTAAAGAGTGGCTCCACACTTGTGACATTTGGTACAGCGAAGGAATTCAGTCTCTCAATTGGGCCAAGGTTATGAAGACTATCACTGACGATCCTGAAGACTTCTTCGAGAACGGTGGATGGACCTTCCTCGACGCTGAATCAGAGGGTGAAGACGCAGGCGACGATTCTGATGAATCCGATGCTTATGACCCAGAAGAAGCAGATGCATCCGATGGTGGTTCAAGCAGTGCTAGCGATGAAGATGAAAGCGAGGGCGAAGAAACTGAATCTGACGATGACGAGGAAGGTTCGTTGGATTCTGATGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACCAATGATCAGTTTGAAT</pcr_primer_p1>
		<pcr_primer_p2>AAACCATATCGAAATTCTTGAGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TGACCAATGATCAGTTTGAATTCGATTCCCCATTTGCTGGGCTTGGCTTTTTCGGAGTTCCCTTCCGTTCAGCGACTACTCTCAAGCCGACAGCTTCGTGCTTGGTTAATCTCACCGAATGGGTATGACATTTCAGAGAAACTGTGACTTCAATCGCCTTTTTTCAGCCACCATTCATCGTCACTCTTTCCGAAGTGGAGCTTGTTCACTTCGAACGTGTTTCGTTGCAACTCAAGAATTTCGATATGGTTT</canonical_amplicon>
		<polymorphic_amplicon>TGACCAATGATCAGTTTGAATTCGATTCCCCATTTGCTGGGCTTGGCTTTTTCGGAGTTCCCTTCCGTTCAGCGACTACTCTCAAGCCGACAGCTTCGTGCTTGGTTAATCTCACCGAATGGGTATGAMATTTCAGAGAAACTGTGACTTCAATCGCCTTTTTTCAGCCACCATTCATCGTCACTCTTTCCGAAGTGGAGCTTGTTCACTTCGAACGTGTTTCGTTGCAACTCAAGAATTTCGATATGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19808</snp_id>
        <super_contig>c012301175.Contig1</super_contig>
        <contig_pos>127189</contig_pos>
        <strand>+</strand>
        <context>AAAGCGAGGG[A/C]GAAGAAACTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCATCCGATGGTGGTTCAAGCAGTGCTAGCGATGAAGATGAAAGCGAGGG</left_flank>
        <right_flank>GAAGAAACTGAATCTGACGATGACGAGGAAGGTTCGTTGGATTCTGATGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTCAAGCCGACAGCTTCGTGCTTGGTTAATCTCACCGAATGGGTATGACATTTCAGAGAAACTGTGACTTCAATCGCCTTTTTTCAGCCACCATTCATCGTCACTCTTTCCGAAGTGGAGCTTGTTCACTTCGAACGTGTTTCGTTGCAACTCAAGAATTTCGATATGGTTTTTATTTTCAAAGATTACAAAATGAAGACCCAAATGGTTGCTCAAATTCCGATGAGCAGTATCGACAAGATTAAAGAGTGGCTCCACACTTGTGACATTTGGTACAGCGAAGGAATTCAGTCTCTCAATTGGGCCAAGGTTATGAAGACTATCACTGACGATCCTGAAGACTTCTTCGAGAACGGTGGATGGACCTTCCTCGACGCTGAATCAGAGGGTGAAGACGCAGGCGACGATTCTGATGAATCCGATGCTTATGACCCAGAAGAAGCAGATGCATCCGATGGTGGTTCAAGCAGTGCTAGCGATGAAGATGAAAGCGAGGGCGAAGAAACTGAATCTGACGATGACGAGGAAGGTTCGTTGGATTCTGATGAATCCGAAGGCAAGGACTGGTCGGATCTCGAAGAAGAAGCAGCGAAGGCGGACAAGAGACGTGAAGTTGAAGACGGAGGACGCGATCGTGATCGTGATCGCGATCGCAAAAGACCGAGCTCGAGCAAGGCAGGACCATCGCACAAACGCAGAAAGTAAAAAAAATCTGCATCATACATTTTGTAAATGATAGGAATTTACTACCCATCCCCATCAACATTTGTGAAAGAATTCACATATTGAAAGAATTCACATATAACTATCTTCCTTCAATCTCAATGTCCCTTTTTCACCAATCGTGGGATACATTCTTTGTTCCCATTAATTTTAATCTGTTGTTTTTACCCCTCACCCCGATCTACATTTTTCTCAATCAATGCACACCTAGCTTGACTTTTATACCGTTTATTTTGATACCAATTGAAAGAGTATTGTGGAATGAAGTTCGATGA</canonical>
            <polymorphic>CTCTCAAGCCGACAGCTTCGTGCTTGGTTAATCTCACCGAATGGGTATGACATTTCAGAGAAACTGTGACTTCAATCGCCTTTTTTCAGCCACCATTCATCGTCACTCTTTCCGAAGTGGAGCTTGTTCACTTCGAACGTGTTTCGTTGCAACTCAAGAATTTCGATATGGTTTTTATTTTCAAAGATTACAAAATGAAGACCCAAATGGTTGCTCAAATTCCGATGAGCAGTATCGACAAGATTAAAGAGTGGCTCCACACTTGTGACATTTGGTACAGCGAAGGAATTCAGTCTCTCAATTGGGCCAAGGTTATGAAGACTATCACTGACGATCCTGAAGACTTCTTCGAGAACGGTGGATGGACCTTCCTCGACGCTGAATCAGAGGGTGAAGACGCAGGCGACGATTCTGATGAATCCGATGCTTATGACCCAGAAGAAGCAGATGCATCCGATGGTGGTTCAAGCAGTGCTAGCGATGAAGATGAAAGCGAGGGMGAAGAAACTGAATCTGACGATGACGAGGAAGGTTCGTTGGATTCTGATGAATCCGAAGGCAAGGACTGGTCGGATCTCGAAGAAGAAGCAGCGAAGGCGGACAAGAGACGTGAAGTTGAAGACGGAGGACGCGATCGTGATCGTGATCGCGATCGCAAAAGACCGAGCTCGAGCAAGGCAGGACCATCGCACAAACGCAGAAAGTAAAAAAAATCTGCATCATACATTTTGTAAATGATAGGAATTTACTACCCATCCCCATCAACATTTGTGAAAGAATTCACATATTGAAAGAATTCACATATAACTATCTTCCTTCAATCTCAATGTCCCTTTTTCACCAATCGTGGGATACATTCTTTGTTCCCATTAATTTTAATCTGTTGTTTTTACCCCTCACCCCGATCTACATTTTTCTCAATCAATGCACACCTAGCTTGACTTTTATACCGTTTATTTTGATACCAATTGAAAGAGTATTGTGGAATGAAGTTCGATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAATCAGAGGGTGAAGAC</pcr_primer_p1>
		<pcr_primer_p2>TTCAACTTCACGTCTCTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CTGAATCAGAGGGTGAAGACGCAGGCGACGATTCTGATGAATCCGATGCTTATGACCCAGAAGAAGCAGATGCATCCGATGGTGGTTCAAGCAGTGCTAGCGATGAAGATGAAAGCGAGGGCGAAGAAACTGAATCTGACGATGACGAGGAAGGTTCGTTGGATTCTGATGAATCCGAAGGCAAGGACTGGTCGGATCTCGAAGAAGAAGCAGCGAAGGCGGACAAGAGACGTGAAGTTGAA</canonical_amplicon>
		<polymorphic_amplicon>CTGAATCAGAGGGTGAAGACGCAGGCGACGATTCTGATGAATCCGATGCTTATGACCCAGAAGAAGCAGATGCATCCGATGGTGGTTCAAGCAGTGCTAGCGATGAAGATGAAAGCGAGGGMGAAGAAACTGAATCTGACGATGACGAGGAAGGTTCGTTGGATTCTGATGAATCCGAAGGCAAGGACTGGTCGGATCTCGAAGAAGAAGCAGCGAAGGCGGACAAGAGACGTGAAGTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19815</snp_id>
        <super_contig>c012400948.Contig5</super_contig>
        <contig_pos>34813</contig_pos>
        <strand>+</strand>
        <context>AGGAGCTTCC[A/G]AATTCCCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTGCTAAGCAAGACTAAACGCTATATTTCGTCTTCTAGGAGCTTCC</left_flank>
        <right_flank>AATTCCCAAAATTTCAGTCTCCTCTGCCTCCCACAAAACTCCGCTGCATT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAGGCTGAAAAATGAGCGATTTGCAAGAGGCTGGCGTGTCTTTGGCGCGAAATTTCTCGATTTGAAGCGTTTTTGGGTCATTTTAGAGCATTTCAAATGGGATTTTTCATGATTTCGGGTGATTTTATTTAAATTTTTAAGTTTAATTAGCCAATTAAATCCACCGATAGACGTAATGCGAGTTCTCTAACCTTTTCTCTGGCCAAAAACATTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCACGCCAGTCTTGGAAATCCGATTTTTTCGAAATTTTTCAGGCATTTTTCGGAATTTGTCATATAATTAGGGAAAATGCCTTCAAAATTTTAAAGGCAATAAAAAGATGGCTGAAAAATCTAAAAATTTCGAAAAAAAATTGAGCGATTTCCAAGAGGCTGGCGTGTCTTTGGCGCGTTTTGAACCTCCTCGATTTGCAGCTTTTTTTGCTAAGCAAGACTAAACGCTATATTTCGTCTTCTAGGAGCTTCCAAATTCCCAAAATTTCAGTCTCCTCTGCCTCCCACAAAACTCCGCTGCATTTCCGGTCCATTCAACCCAAAAACCGTACTCTTTCTGGTCCAACAAGGCATCGACCTGTTCGACTCGTCATTCGCCATCAAACTGGCCGAAGAGGGTCACGCCTTCTGCCTGGCAGACGACTATCCGACGTCTTCAAAATATGAAGTCGTGGATTTCAAAGATCAAGAAAAGTTTGCCGACGATTTTACGCCGGTTTTCGATGGATGCGGCTGTTATACGTGCACGAAATACACGAAGGGCTATCTTCAACACCTTCTGAATACCAAGGAACTTCTGGCGTCGATTTTGTTGGTCATGTTAGTTTTTTTTTTTTGGAAATTTTCAAAAAATCGCGCTTAAAATTAAGACAAGAGCTGAAAATCACAAAAAAAAATGCTCGGAATTAATCCAAAAACGCTTCAATTCGAGGAATTTCAAAACGCGCCAAAGGCGTCCCTGCCTTGAAAACTC</canonical>
            <polymorphic>AAAAGGCTGAAAAATGAGCGATTTGCAAGAGGCTGGCGTGTCTTTGGCGCGAAATTTCTCGATTTGAAGCGTTTTTGGGTCATTTTAGAGCATTTCAAATGGGATTTTTCATGATTTCGGGTGATTTTATTTAAATTTTTAAGTTTAATTAGCCAATTAAATCCACCGATAGACGTAATGCGAGTTCTCTAACCTTTTCTCTGGCCAAAAACATTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCACGCCAGTCTTGGAAATCCGATTTTTTCGAAATTTTTCAGGCATTTTTCGGAATTTGTCATATAATTAGGGAAAATGCCTTCAAAATTTTAAAGGCAATAAAAAGATGGCTGAAAAATCTAAAAATTTCGAAAAAAAATTGAGCGATTTCCAAGAGGCTGGCGTGTCTTTGGCGCGTTTTGAACCTCCTCGATTTGCAGCTTTTTTTGCTAAGCAAGACTAAACGCTATATTTCGTCTTCTAGGAGCTTCCRAATTCCCAAAATTTCAGTCTCCTCTGCCTCCCACAAAACTCCGCTGCATTTCCGGTCCATTCAACCCAAAAACCGTACTCTTTCTGGTCCAACAAGGCATCGACCTGTTCGACTCGTCATTCGCCATCAAACTGGCCGAAGAGGGTCACGCCTTCTGCCTGGCAGACGACTATCCGACGTCTTCAAAATATGAAGTCGTGGATTTCAAAGATCAAGAAAAGTTTGCCGACGATTTTACGCCGGTTTTCGATGGATGCGGCTGTTATACGTGCACGAAATACACGAAGGGCTATCTTCAACACCTTCTGAATACCAAGGAACTTCTGGCGTCGATTTTGTTGGTCATGTTAGTTTTTTTTTTTTGGAAATTTTCAAAAAATCGCGCTTAAAATTAAGACAAGAGCTGAAAATCACAAAAAAAAATGCTCGGAATTAATCCAAAAACGCTTCAATTCGAGGAATTTCAAAACGCGCCAAAGGCGTCCCTGCCTTGAAAACTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>357 129 93 93 81 52 52 41 39 33 21 9</canonical_bands>
                <polymorphic_bands>357 138 93 93 81 52 52 41 39 33 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAAAGATGGCTGAAAAATCTA</pcr_primer_p1>
		<pcr_primer_p2>CTTGTTGGACCAGAAAGAGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAAAAGATGGCTGAAAAATCTAAAAATTTCGAAAAAAAATTGAGCGATTTCCAAGAGGCTGGCGTGTCTTTGGCGCGTTTTGAACCTCCTCGATTTGCAGCTTTTTTTGCTAAGCAAGACTAAACGCTATATTTCGTCTTCTAGGAGCTTCCAAATTCCCAAAATTTCAGTCTCCTCTGCCTCCCACAAAACTCCGCTGCATTTCCGGTCCATTCAACCCAAAAACCGTACTCTTTCTGGTCCAACAAG</canonical_amplicon>
		<polymorphic_amplicon>TAAAAAGATGGCTGAAAAATCTAAAAATTTCGAAAAAAAATTGAGCGATTTCCAAGAGGCTGGCGTGTCTTTGGCGCGTTTTGAACCTCCTCGATTTGCAGCTTTTTTTGCTAAGCAAGACTAAACGCTATATTTCGTCTTCTAGGAGCTTCCRAATTCCCAAAATTTCAGTCTCCTCTGCCTCCCACAAAACTCCGCTGCATTTCCGGTCCATTCAACCCAAAAACCGTACTCTTTCTGGTCCAACAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19816</snp_id>
        <super_contig>c012400948.Contig5</super_contig>
        <contig_pos>34777</contig_pos>
        <strand>+</strand>
        <context>TTGCTAAGCA[A/G]GACTAAACGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTTGGCGCGTTTTGAACCTCCTCGATTTGCAGCTTTTTTTGCTAAGCA</left_flank>
        <right_flank>GACTAAACGCTATATTTCGTCTTCTAGGAGCTTCCAAATTCCCAAAATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTTAACCCTGAAAATTGTGTGAAAATGAAACAAAAAAGGCTGAAAAATGAGCGATTTGCAAGAGGCTGGCGTGTCTTTGGCGCGAAATTTCTCGATTTGAAGCGTTTTTGGGTCATTTTAGAGCATTTCAAATGGGATTTTTCATGATTTCGGGTGATTTTATTTAAATTTTTAAGTTTAATTAGCCAATTAAATCCACCGATAGACGTAATGCGAGTTCTCTAACCTTTTCTCTGGCCAAAAACATTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCACGCCAGTCTTGGAAATCCGATTTTTTCGAAATTTTTCAGGCATTTTTCGGAATTTGTCATATAATTAGGGAAAATGCCTTCAAAATTTTAAAGGCAATAAAAAGATGGCTGAAAAATCTAAAAATTTCGAAAAAAAATTGAGCGATTTCCAAGAGGCTGGCGTGTCTTTGGCGCGTTTTGAACCTCCTCGATTTGCAGCTTTTTTTGCTAAGCAAGACTAAACGCTATATTTCGTCTTCTAGGAGCTTCCAAATTCCCAAAATTTCAGTCTCCTCTGCCTCCCACAAAACTCCGCTGCATTTCCGGTCCATTCAACCCAAAAACCGTACTCTTTCTGGTCCAACAAGGCATCGACCTGTTCGACTCGTCATTCGCCATCAAACTGGCCGAAGAGGGTCACGCCTTCTGCCTGGCAGACGACTATCCGACGTCTTCAAAATATGAAGTCGTGGATTTCAAAGATCAAGAAAAGTTTGCCGACGATTTTACGCCGGTTTTCGATGGATGCGGCTGTTATACGTGCACGAAATACACGAAGGGCTATCTTCAACACCTTCTGAATACCAAGGAACTTCTGGCGTCGATTTTGTTGGTCATGTTAGTTTTTTTTTTTTGGAAATTTTCAAAAAATCGCGCTTAAAATTAAGACAAGAGCTGAAAATCACAAAAAAAAATGCTCGGAATTAATCCAAAAACGCTTCAATTCGAGGAATTT</canonical>
            <polymorphic>GATTTTAACCCTGAAAATTGTGTGAAAATGAAACAAAAAAGGCTGAAAAATGAGCGATTTGCAAGAGGCTGGCGTGTCTTTGGCGCGAAATTTCTCGATTTGAAGCGTTTTTGGGTCATTTTAGAGCATTTCAAATGGGATTTTTCATGATTTCGGGTGATTTTATTTAAATTTTTAAGTTTAATTAGCCAATTAAATCCACCGATAGACGTAATGCGAGTTCTCTAACCTTTTCTCTGGCCAAAAACATTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCACGCCAGTCTTGGAAATCCGATTTTTTCGAAATTTTTCAGGCATTTTTCGGAATTTGTCATATAATTAGGGAAAATGCCTTCAAAATTTTAAAGGCAATAAAAAGATGGCTGAAAAATCTAAAAATTTCGAAAAAAAATTGAGCGATTTCCAAGAGGCTGGCGTGTCTTTGGCGCGTTTTGAACCTCCTCGATTTGCAGCTTTTTTTGCTAAGCARGACTAAACGCTATATTTCGTCTTCTAGGAGCTTCCAAATTCCCAAAATTTCAGTCTCCTCTGCCTCCCACAAAACTCCGCTGCATTTCCGGTCCATTCAACCCAAAAACCGTACTCTTTCTGGTCCAACAAGGCATCGACCTGTTCGACTCGTCATTCGCCATCAAACTGGCCGAAGAGGGTCACGCCTTCTGCCTGGCAGACGACTATCCGACGTCTTCAAAATATGAAGTCGTGGATTTCAAAGATCAAGAAAAGTTTGCCGACGATTTTACGCCGGTTTTCGATGGATGCGGCTGTTATACGTGCACGAAATACACGAAGGGCTATCTTCAACACCTTCTGAATACCAAGGAACTTCTGGCGTCGATTTTGTTGGTCATGTTAGTTTTTTTTTTTTGGAAATTTTCAAAAAATCGCGCTTAAAATTAAGACAAGAGCTGAAAATCACAAAAAAAAATGCTCGGAATTAATCCAAAAACGCTTCAATTCGAGGAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAAAGATGGCTGAAAAATCTA</pcr_primer_p1>
		<pcr_primer_p2>CTTGTTGGACCAGAAAGAGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAAAAGATGGCTGAAAAATCTAAAAATTTCGAAAAAAAATTGAGCGATTTCCAAGAGGCTGGCGTGTCTTTGGCGCGTTTTGAACCTCCTCGATTTGCAGCTTTTTTTGCTAAGCAAGACTAAACGCTATATTTCGTCTTCTAGGAGCTTCCAAATTCCCAAAATTTCAGTCTCCTCTGCCTCCCACAAAACTCCGCTGCATTTCCGGTCCATTCAACCCAAAAACCGTACTCTTTCTGGTCCAACAAG</canonical_amplicon>
		<polymorphic_amplicon>TAAAAAGATGGCTGAAAAATCTAAAAATTTCGAAAAAAAATTGAGCGATTTCCAAGAGGCTGGCGTGTCTTTGGCGCGTTTTGAACCTCCTCGATTTGCAGCTTTTTTTGCTAAGCARGACTAAACGCTATATTTCGTCTTCTAGGAGCTTCCAAATTCCCAAAATTTCAGTCTCCTCTGCCTCCCACAAAACTCCGCTGCATTTCCGGTCCATTCAACCCAAAAACCGTACTCTTTCTGGTCCAACAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19817</snp_id>
        <super_contig>c012400948.Contig5</super_contig>
        <contig_pos>34766</contig_pos>
        <strand>+</strand>
        <context>TGCAGCTTTT[C/T]TTGCTAAGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGCTGGCGTGTCTTTGGCGCGTTTTGAACCTCCTCGATTTGCAGCTTTT</left_flank>
        <right_flank>TTGCTAAGCAAGACTAAACGCTATATTTCGTCTTCTAGGAGCTTCCAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCATTTTTTCGATTTTAACCCTGAAAATTGTGTGAAAATGAAACAAAAAAGGCTGAAAAATGAGCGATTTGCAAGAGGCTGGCGTGTCTTTGGCGCGAAATTTCTCGATTTGAAGCGTTTTTGGGTCATTTTAGAGCATTTCAAATGGGATTTTTCATGATTTCGGGTGATTTTATTTAAATTTTTAAGTTTAATTAGCCAATTAAATCCACCGATAGACGTAATGCGAGTTCTCTAACCTTTTCTCTGGCCAAAAACATTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCACGCCAGTCTTGGAAATCCGATTTTTTCGAAATTTTTCAGGCATTTTTCGGAATTTGTCATATAATTAGGGAAAATGCCTTCAAAATTTTAAAGGCAATAAAAAGATGGCTGAAAAATCTAAAAATTTCGAAAAAAAATTGAGCGATTTCCAAGAGGCTGGCGTGTCTTTGGCGCGTTTTGAACCTCCTCGATTTGCAGCTTTTTTTGCTAAGCAAGACTAAACGCTATATTTCGTCTTCTAGGAGCTTCCAAATTCCCAAAATTTCAGTCTCCTCTGCCTCCCACAAAACTCCGCTGCATTTCCGGTCCATTCAACCCAAAAACCGTACTCTTTCTGGTCCAACAAGGCATCGACCTGTTCGACTCGTCATTCGCCATCAAACTGGCCGAAGAGGGTCACGCCTTCTGCCTGGCAGACGACTATCCGACGTCTTCAAAATATGAAGTCGTGGATTTCAAAGATCAAGAAAAGTTTGCCGACGATTTTACGCCGGTTTTCGATGGATGCGGCTGTTATACGTGCACGAAATACACGAAGGGCTATCTTCAACACCTTCTGAATACCAAGGAACTTCTGGCGTCGATTTTGTTGGTCATGTTAGTTTTTTTTTTTTGGAAATTTTCAAAAAATCGCGCTTAAAATTAAGACAAGAGCTGAAAATCACAAAAAAAAATGCTCGGAATTAATCCAAAAACGCTTCAAT</canonical>
            <polymorphic>ACCATTTTTTCGATTTTAACCCTGAAAATTGTGTGAAAATGAAACAAAAAAGGCTGAAAAATGAGCGATTTGCAAGAGGCTGGCGTGTCTTTGGCGCGAAATTTCTCGATTTGAAGCGTTTTTGGGTCATTTTAGAGCATTTCAAATGGGATTTTTCATGATTTCGGGTGATTTTATTTAAATTTTTAAGTTTAATTAGCCAATTAAATCCACCGATAGACGTAATGCGAGTTCTCTAACCTTTTCTCTGGCCAAAAACATTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCACGCCAGTCTTGGAAATCCGATTTTTTCGAAATTTTTCAGGCATTTTTCGGAATTTGTCATATAATTAGGGAAAATGCCTTCAAAATTTTAAAGGCAATAAAAAGATGGCTGAAAAATCTAAAAATTTCGAAAAAAAATTGAGCGATTTCCAAGAGGCTGGCGTGTCTTTGGCGCGTTTTGAACCTCCTCGATTTGCAGCTTTTYTTGCTAAGCAAGACTAAACGCTATATTTCGTCTTCTAGGAGCTTCCAAATTCCCAAAATTTCAGTCTCCTCTGCCTCCCACAAAACTCCGCTGCATTTCCGGTCCATTCAACCCAAAAACCGTACTCTTTCTGGTCCAACAAGGCATCGACCTGTTCGACTCGTCATTCGCCATCAAACTGGCCGAAGAGGGTCACGCCTTCTGCCTGGCAGACGACTATCCGACGTCTTCAAAATATGAAGTCGTGGATTTCAAAGATCAAGAAAAGTTTGCCGACGATTTTACGCCGGTTTTCGATGGATGCGGCTGTTATACGTGCACGAAATACACGAAGGGCTATCTTCAACACCTTCTGAATACCAAGGAACTTCTGGCGTCGATTTTGTTGGTCATGTTAGTTTTTTTTTTTTGGAAATTTTCAAAAAATCGCGCTTAAAATTAAGACAAGAGCTGAAAATCACAAAAAAAAATGCTCGGAATTAATCCAAAAACGCTTCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAAAGATGGCTGAAAAATCTA</pcr_primer_p1>
		<pcr_primer_p2>CTTGTTGGACCAGAAAGAGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAAAAGATGGCTGAAAAATCTAAAAATTTCGAAAAAAAATTGAGCGATTTCCAAGAGGCTGGCGTGTCTTTGGCGCGTTTTGAACCTCCTCGATTTGCAGCTTTTTTTGCTAAGCAAGACTAAACGCTATATTTCGTCTTCTAGGAGCTTCCAAATTCCCAAAATTTCAGTCTCCTCTGCCTCCCACAAAACTCCGCTGCATTTCCGGTCCATTCAACCCAAAAACCGTACTCTTTCTGGTCCAACAAG</canonical_amplicon>
		<polymorphic_amplicon>TAAAAAGATGGCTGAAAAATCTAAAAATTTCGAAAAAAAATTGAGCGATTTCCAAGAGGCTGGCGTGTCTTTGGCGCGTTTTGAACCTCCTCGATTTGCAGCTTTTYTTGCTAAGCAAGACTAAACGCTATATTTCGTCTTCTAGGAGCTTCCAAATTCCCAAAATTTCAGTCTCCTCTGCCTCCCACAAAACTCCGCTGCATTTCCGGTCCATTCAACCCAAAAACCGTACTCTTTCTGGTCCAACAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19818</snp_id>
        <super_contig>c012400948.Contig5</super_contig>
        <contig_pos>34629</contig_pos>
        <strand>+</strand>
        <context>TCATATAATT[A/G]GGGAAAATGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGATTTTTTCGAAATTTTTCAGGCATTTTTCGGAATTTGTCATATAATT</left_flank>
        <right_flank>GGGAAAATGCCTTCAAAATTTTAAAGGCAATAAAAAGATGGCTGAAAAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAAACTTGTCAAAAATTCTAAATGTTCAAAAATTTAATTTTCTGAAAAATCACCCAAAAACACGCCGAAGGCACGCCAGCCTTCTGTAAATTGCTATTTTTTGGTCAATTTTTGCAAAAAATTGCAGATTTTTCAACCATTTTTTCGATTTTAACCCTGAAAATTGTGTGAAAATGAAACAAAAAAGGCTGAAAAATGAGCGATTTGCAAGAGGCTGGCGTGTCTTTGGCGCGAAATTTCTCGATTTGAAGCGTTTTTGGGTCATTTTAGAGCATTTCAAATGGGATTTTTCATGATTTCGGGTGATTTTATTTAAATTTTTAAGTTTAATTAGCCAATTAAATCCACCGATAGACGTAATGCGAGTTCTCTAACCTTTTCTCTGGCCAAAAACATTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCACGCCAGTCTTGGAAATCCGATTTTTTCGAAATTTTTCAGGCATTTTTCGGAATTTGTCATATAATTAGGGAAAATGCCTTCAAAATTTTAAAGGCAATAAAAAGATGGCTGAAAAATCTAAAAATTTCGAAAAAAAATTGAGCGATTTCCAAGAGGCTGGCGTGTCTTTGGCGCGTTTTGAACCTCCTCGATTTGCAGCTTTTTTTGCTAAGCAAGACTAAACGCTATATTTCGTCTTCTAGGAGCTTCCAAATTCCCAAAATTTCAGTCTCCTCTGCCTCCCACAAAACTCCGCTGCATTTCCGGTCCATTCAACCCAAAAACCGTACTCTTTCTGGTCCAACAAGGCATCGACCTGTTCGACTCGTCATTCGCCATCAAACTGGCCGAAGAGGGTCACGCCTTCTGCCTGGCAGACGACTATCCGACGTCTTCAAAATATGAAGTCGTGGATTTCAAAGATCAAGAAAAGTTTGCCGACGATTTTACGCCGGTTTTCGATGGATGCGGCTGTTATACGTGCACGAAATACACGAAGGGCTATCTTCAACACCTTCTGAATACCAA</canonical>
            <polymorphic>TTCAAACTTGTCAAAAATTCTAAATGTTCAAAAATTTAATTTTCTGAAAAATCACCCAAAAACACGCCGAAGGCACGCCAGCCTTCTGTAAATTGCTATTTTTTGGTCAATTTTTGCAAAAAATTGCAGATTTTTCAACCATTTTTTCGATTTTAACCCTGAAAATTGTGTGAAAATGAAACAAAAAAGGCTGAAAAATGAGCGATTTGCAAGAGGCTGGCGTGTCTTTGGCGCGAAATTTCTCGATTTGAAGCGTTTTTGGGTCATTTTAGAGCATTTCAAATGGGATTTTTCATGATTTCGGGTGATTTTATTTAAATTTTTAAGTTTAATTAGCCAATTAAATCCACCGATAGACGTAATGCGAGTTCTCTAACCTTTTCTCTGGCCAAAAACATTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCACGCCAGTCTTGGAAATCCGATTTTTTCGAAATTTTTCAGGCATTTTTCGGAATTTGTCATATAATTRGGGAAAATGCCTTCAAAATTTTAAAGGCAATAAAAAGATGGCTGAAAAATCTAAAAATTTCGAAAAAAAATTGAGCGATTTCCAAGAGGCTGGCGTGTCTTTGGCGCGTTTTGAACCTCCTCGATTTGCAGCTTTTTTTGCTAAGCAAGACTAAACGCTATATTTCGTCTTCTAGGAGCTTCCAAATTCCCAAAATTTCAGTCTCCTCTGCCTCCCACAAAACTCCGCTGCATTTCCGGTCCATTCAACCCAAAAACCGTACTCTTTCTGGTCCAACAAGGCATCGACCTGTTCGACTCGTCATTCGCCATCAAACTGGCCGAAGAGGGTCACGCCTTCTGCCTGGCAGACGACTATCCGACGTCTTCAAAATATGAAGTCGTGGATTTCAAAGATCAAGAAAAGTTTGCCGACGATTTTACGCCGGTTTTCGATGGATGCGGCTGTTATACGTGCACGAAATACACGAAGGGCTATCTTCAACACCTTCTGAATACCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATCCACCGATAGACGTAAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTAGATTTTTCAGCCATCT</pcr_primer_p2>
		<pcr_amplicon_size>217</pcr_amplicon_size>
		<canonical_amplicon>TAAATCCACCGATAGACGTAATGCGAGTTCTCTAACCTTTTCTCTGGCCAAAAACATTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCACGCCAGTCTTGGAAATCCGATTTTTTCGAAATTTTTCAGGCATTTTTCGGAATTTGTCATATAATTAGGGAAAATGCCTTCAAAATTTTAAAGGCAATAAAAAGATGGCTGAAAAATCTAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TAAATCCACCGATAGACGTAATGCGAGTTCTCTAACCTTTTCTCTGGCCAAAAACATTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCACGCCAGTCTTGGAAATCCGATTTTTTCGAAATTTTTCAGGCATTTTTCGGAATTTGTCATATAATTRGGGAAAATGCCTTCAAAATTTTAAAGGCAATAAAAAGATGGCTGAAAAATCTAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19819</snp_id>
        <super_contig>c012400948.Contig5</super_contig>
        <contig_pos>34559</contig_pos>
        <strand>+</strand>
        <context>ACGCGCCAAA[A/G]GCACGCCAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCTCTGGCCAAAAACATTTCAAATCGAGGAATTTCAAAACGCGCCAAA</left_flank>
        <right_flank>GCACGCCAGTCTTGGAAATCCGATTTTTTCGAAATTTTTCAGGCATTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCTAAATTTTTCAGAAATTTAAAAAATTCAGAAAATCAGAAATTTCCGAAATTCAGGAATTCAGAGATTCAAACTTGTCAAAAATTCTAAATGTTCAAAAATTTAATTTTCTGAAAAATCACCCAAAAACACGCCGAAGGCACGCCAGCCTTCTGTAAATTGCTATTTTTTGGTCAATTTTTGCAAAAAATTGCAGATTTTTCAACCATTTTTTCGATTTTAACCCTGAAAATTGTGTGAAAATGAAACAAAAAAGGCTGAAAAATGAGCGATTTGCAAGAGGCTGGCGTGTCTTTGGCGCGAAATTTCTCGATTTGAAGCGTTTTTGGGTCATTTTAGAGCATTTCAAATGGGATTTTTCATGATTTCGGGTGATTTTATTTAAATTTTTAAGTTTAATTAGCCAATTAAATCCACCGATAGACGTAATGCGAGTTCTCTAACCTTTTCTCTGGCCAAAAACATTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCACGCCAGTCTTGGAAATCCGATTTTTTCGAAATTTTTCAGGCATTTTTCGGAATTTGTCATATAATTAGGGAAAATGCCTTCAAAATTTTAAAGGCAATAAAAAGATGGCTGAAAAATCTAAAAATTTCGAAAAAAAATTGAGCGATTTCCAAGAGGCTGGCGTGTCTTTGGCGCGTTTTGAACCTCCTCGATTTGCAGCTTTTTTTGCTAAGCAAGACTAAACGCTATATTTCGTCTTCTAGGAGCTTCCAAATTCCCAAAATTTCAGTCTCCTCTGCCTCCCACAAAACTCCGCTGCATTTCCGGTCCATTCAACCCAAAAACCGTACTCTTTCTGGTCCAACAAGGCATCGACCTGTTCGACTCGTCATTCGCCATCAAACTGGCCGAAGAGGGTCACGCCTTCTGCCTGGCAGACGACTATCCGACGTCTTCAAAATATGAAGTCGTGGATTTCAAAGATCAAGAAAAGTTTGCCGACGATTTTACGCCGGTTT</canonical>
            <polymorphic>ATTTCTAAATTTTTCAGAAATTTAAAAAATTCAGAAAATCAGAAATTTCCGAAATTCAGGAATTCAGAGATTCAAACTTGTCAAAAATTCTAAATGTTCAAAAATTTAATTTTCTGAAAAATCACCCAAAAACACGCCGAAGGCACGCCAGCCTTCTGTAAATTGCTATTTTTTGGTCAATTTTTGCAAAAAATTGCAGATTTTTCAACCATTTTTTCGATTTTAACCCTGAAAATTGTGTGAAAATGAAACAAAAAAGGCTGAAAAATGAGCGATTTGCAAGAGGCTGGCGTGTCTTTGGCGCGAAATTTCTCGATTTGAAGCGTTTTTGGGTCATTTTAGAGCATTTCAAATGGGATTTTTCATGATTTCGGGTGATTTTATTTAAATTTTTAAGTTTAATTAGCCAATTAAATCCACCGATAGACGTAATGCGAGTTCTCTAACCTTTTCTCTGGCCAAAAACATTTCAAATCGAGGAATTTCAAAACGCGCCAAARGCACGCCAGTCTTGGAAATCCGATTTTTTCGAAATTTTTCAGGCATTTTTCGGAATTTGTCATATAATTAGGGAAAATGCCTTCAAAATTTTAAAGGCAATAAAAAGATGGCTGAAAAATCTAAAAATTTCGAAAAAAAATTGAGCGATTTCCAAGAGGCTGGCGTGTCTTTGGCGCGTTTTGAACCTCCTCGATTTGCAGCTTTTTTTGCTAAGCAAGACTAAACGCTATATTTCGTCTTCTAGGAGCTTCCAAATTCCCAAAATTTCAGTCTCCTCTGCCTCCCACAAAACTCCGCTGCATTTCCGGTCCATTCAACCCAAAAACCGTACTCTTTCTGGTCCAACAAGGCATCGACCTGTTCGACTCGTCATTCGCCATCAAACTGGCCGAAGAGGGTCACGCCTTCTGCCTGGCAGACGACTATCCGACGTCTTCAAAATATGAAGTCGTGGATTTCAAAGATCAAGAAAAGTTTGCCGACGATTTTACGCCGGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCAAATGGGATTTTTCAT</pcr_primer_p1>
		<pcr_primer_p2>TTAAAATTTTGAAGGCATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTCAAATGGGATTTTTCATGATTTCGGGTGATTTTATTTAAATTTTTAAGTTTAATTAGCCAATTAAATCCACCGATAGACGTAATGCGAGTTCTCTAACCTTTTCTCTGGCCAAAAACATTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCACGCCAGTCTTGGAAATCCGATTTTTTCGAAATTTTTCAGGCATTTTTCGGAATTTGTCATATAATTAGGGAAAATGCCTTCAAAATTTTAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTCAAATGGGATTTTTCATGATTTCGGGTGATTTTATTTAAATTTTTAAGTTTAATTAGCCAATTAAATCCACCGATAGACGTAATGCGAGTTCTCTAACCTTTTCTCTGGCCAAAAACATTTCAAATCGAGGAATTTCAAAACGCGCCAAARGCACGCCAGTCTTGGAAATCCGATTTTTTCGAAATTTTTCAGGCATTTTTCGGAATTTGTCATATAATTAGGGAAAATGCCTTCAAAATTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19820</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>10774</contig_pos>
        <strand></strand>
        <context>TAAATAAAAA[C/A]AGGTATTTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTGTGGTTTTTTTTGCAGAAATTTTCAGTGATTTGATAATAAATAAAAA</left_flank>
        <right_flank>AGGTATTTCGGAAGTCAAATCTTTATAAAAACGAATAAATTACAAAATAA</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGGATTCGAAGTTGTCTGCCTTCTGCTCTAAAGCCAGACCTCTTACCCACTGCGCTAGCCGCCTCGAGGAGCCGCGCGCTCGCCGTTAACCCTGACGGGATATATAGGTTTTAACCCTGACGGGATATATAGGTTTTTAGGGTGTTAAACTCTATTTTTTGAGTTTCAAGTGCTGAAAATAGTGCTGGAAAGCTCTTCTTAAAGGGAAAAATATCCCTAATTTTCAGAAGTCCCTGCTTTTAGCGGAGGCTGCCCTCAAGGATACATCAGAATCTCAGAGGGATTGTGCTGTGAAGACGATCATATTGAATACACGACATGCGTTGATCAACCCAATAAGCGCGGAGTGAATGAGTGTCCCGGACTGCAGGAATACTGTAACAATAGTTTGTTCAAAAAAGTTATGATGATCAATTGCCCAAGAAGTTGTGGATTTTGTACATAGCTTTTGTGGTTTTTTTTGCAGAAATTTTCAGTGATTTGATAATAAATAAAAACAGGTATTTCGGAAGTCAAATCTTTATAAAAACGAATAAATTACAAAATAATAAAAATCAAAAACAAGGAAATAAAGGCGCATTTTTCTTTGATTGATTCCGGAAAACACCTGATTTCAGGATTCTATTTTCGATATTTTTTCAGGTGATAAATTTTCTGAGTCAGTAAAAAATTGAAGTTCGAAATGTTTCCTGATATTTGATGAAATGTCCTTTATCATATCAACTGATCAGCTTCCGTCAGCCAACAATTAACCTAACATATCCGATTATTATGTATCCTATGATTACGCATTTCGAAAACCTTTGATTTTTTTTCTCGCAATTTTCTGATCGTGTTTTTCCCAACTTCCTAGACACCTCCTTCCGACACATACAACTTTGTGATTTTTTATTAATTTTTTTTTCATTATATTAGAAAATCACCCAGAAGTTCAAGGCCAGAATGAATGTCTCCAACGTGATAGAATCTGAATGCGATTCGTCATACAATCCGTTGTT</canonical>
            <polymorphic>TCAGGATTCGAAGTTGTCTGCCTTCTGCTCTAAAGCCAGACCTCTTACCCACTGCGCTAGCCGCCTCGAGGAGCCGCGCGCTCGCCGTTAACCCTGACGGGATATATAGGTTTTAACCCTGACGGGATATATAGGTTTTTAGGGTGTTAAACTCTATTTTTTGAGTTTCAAGTGCTGAAAATAGTGCTGGAAAGCTCTTCTTAAAGGGAAAAATATCCCTAATTTTCAGAAGTCCCTGCTTTTAGCGGAGGCTGCCCTCAAGGATACATCAGAATCTCAGAGGGATTGTGCTGTGAAGACGATCATATTGAATACACGACATGCGTTGATCAACCCAATAAGCGCGGAGTGAATGAGTGTCCCGGACTGCAGGAATACTGTAACAATAGTTTGTTCAAAAAAGTTATGATGATCAATTGCCCAAGAAGTTGTGGATTTTGTACATAGCTTTTGTGGTTTTTTTTGCAGAAATTTTCAGTGATTTGATAATAAATAAAAAMAGGTATTTCGGAAGTCAAATCTTTATAAAAACGAATAAATTACAAAATAATAAAAATCAAAAACAAGGAAATAAAGGCGCATTTTTCTTTGATTGATTCCGGAAAACACCTGATTTCAGGATTCTATTTTCGATATTTTTTCAGGTGATAAATTTTCTGAGTCAGTAAAAAATTGAAGTTCGAAATGTTTCCTGATATTTGATGAAATGTCCTTTATCATATCAACTGATCAGCTTCCGTCAGCCAACAATTAACCTAACATATCCGATTATTATGTATCCTATGATTACGCATTTCGAAAACCTTTGATTTTTTTTCTCGCAATTTTCTGATCGTGTTTTTCCCAACTTCCTAGACACCTCCTTCCGACACATACAACTTTGTGATTTTTTATTAATTTTTTTTTCATTATATTAGAAAATCACCCAGAAGTTCAAGGCCAGAATGAATGTCTCCAACGTGATAGAATCTGAATGCGATTCGTCATACAATCCGTTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTGTGGATTTTGTACATAGC</pcr_primer_p1>
		<pcr_primer_p2>CTGACTCAGAAAATTTATCACCT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AAGTTGTGGATTTTGTACATAGCTTTTGTGGTTTTTTTTGCAGAAATTTTCAGTGATTTGATAATAAATAAAAACAGGTATTTCGGAAGTCAAATCTTTATAAAAACGAATAAATTACAAAATAATAAAAATCAAAAACAAGGAAATAAAGGCGCATTTTTCTTTGATTGATTCCGGAAAACACCTGATTTCAGGATTCTATTTTCGATATTTTTTCAGGTGATAAATTTTCTGAGTCAG</canonical_amplicon>
		<polymorphic_amplicon>AAGTTGTGGATTTTGTACATAGCTTTTGTGGTTTTTTTTGCAGAAATTTTCAGTGATTTGATAATAAATAAAAAMAGGTATTTCGGAAGTCAAATCTTTATAAAAACGAATAAATTACAAAATAATAAAAATCAAAAACAAGGAAATAAAGGCGCATTTTTCTTTGATTGATTCCGGAAAACACCTGATTTCAGGATTCTATTTTCGATATTTTTTCAGGTGATAAATTTTCTGAGTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19827</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>260323</contig_pos>
        <strand></strand>
        <context>cacaaaaatA[T/G]AATCTTTACT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CGGCTACCACATTCCCTTCCACAGCCCTATATTTCTGTACCACAAAAATA</left_flank>
        <right_flank>AATCTTTACTCACGTTCGTCTGAAAACGTATTCCAAATAGGAAGCCTTGT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGTGCGGAGTTTAAGCCCGGTAGTGAAGTCCTTAAAGGAGCATGTATTTACGTTGGTGGCCTAGAAATCCAAATTTTCTAAAAAGTTAGGCCACCATTCATTTTATCAATCGGAAGCGCTTGTTTTTAGTAACACCAGTTGTTGGATTCCAAAAACCTTCGATTCACAGCCGTTTGAATCGATGGCCTAGTTTTGGATTTCTAGGCCATCAATCTTCAAATTGATGTAACTCCCTACAAAATGAACGTTTTTGAAACCTAAAGACTGTGCAGGAATTCTCTGACATCTAGCCAATGAAATTGTGGCCTAGGTTCCCGGATTTCTAGGGCATTGGTGGCCTAGAAATCCAAAATTTTAGAAAAAGTAAGCCATTTATTTCAAGCGGTTATTTCAAGATATTCAAAAATCGAGATTTTTAGGTCACTGTAGTTGTATGATCTTCAACCACGGCTACCACATTCCCTTCCACAGCCCTATATTTCTGTACCACAAAAATATAATCTTTACTCACGTTCGTCTGAAAACGTATTCCAAATAGGAAGCCTTGTATCTAGTCTGATACTCTGCTAGATACTTTGAATCAGCCACTGGCAAGTAGTCCTCCGGAAACAAATCACTCAAATTGTTCACTAATTCGTCGAGAGTCTCGGGAAGTTCCACTCCGTACATTTGCTTGTATAAAAATGCCAAATCGATGAGACCATTGTGAAGACAAAGTGTGCTTGAAGAGCCTAGCAACTCATGGAATAGCGTTTTCAGTGGACAATTGGTTCCCTGGAATTAGTGTACTGTGTCGATTATGCATATGCGATGAAAGTCGACTGAATCTCGATTAAAATCGACTTTTATCGATTTCGAATCGACTTGAATGTCCGCTAGGATTATTTGAAATGGTGGCCGATTTTTTTGGAAGTTGAGTTTTCTAGGCTACCATGTCAAAACGGTCCAGAAACGGCCTGCTATTCATCTGGTGCGTTTTCTAGACCATTTCGACATGG</canonical>
            <polymorphic>AGTGTGCGGAGTTTAAGCCCGGTAGTGAAGTCCTTAAAGGAGCATGTATTTACGTTGGTGGCCTAGAAATCCAAATTTTCTAAAAAGTTAGGCCACCATTCATTTTATCAATCGGAAGCGCTTGTTTTTAGTAACACCAGTTGTTGGATTCCAAAAACCTTCGATTCACAGCCGTTTGAATCGATGGCCTAGTTTTGGATTTCTAGGCCATCAATCTTCAAATTGATGTAACTCCCTACAAAATGAACGTTTTTGAAACCTAAAGACTGTGCAGGAATTCTCTGACATCTAGCCAATGAAATTGTGGCCTAGGTTCCCGGATTTCTAGGGCATTGGTGGCCTAGAAATCCAAAATTTTAGAAAAAGTAAGCCATTTATTTCAAGCGGTTATTTCAAGATATTCAAAAATCGAGATTTTTAGGTCACTGTAGTTGTATGATCTTCAACCACGGCTACCACATTCCCTTCCACAGCCCTATATTTCTGTACCACAAAAATAKAATCTTTACTCACGTTCGTCTGAAAACGTATTCCAAATAGGAAGCCTTGTATCTAGTCTGATACTCTGCTAGATACTTTGAATCAGCCACTGGCAAGTAGTCCTCCGGAAACAAATCACTCAAATTGTTCACTAATTCGTCGAGAGTCTCGGGAAGTTCCACTCCGTACATTTGCTTGTATAAAAATGCCAAATCGATGAGACCATTGTGAAGACAAAGTGTGCTTGAAGAGCCTAGCAACTCATGGAATAGCGTTTTCAGTGGACAATTGGTTCCCTGGAATTAGTGTACTGTGTCGATTATGCATATGCGATGAAAGTCGACTGAATCTCGATTAAAATCGACTTTTATCGATTTCGAATCGACTTGAATGTCCGCTAGGATTATTTGAAATGGTGGCCGATTTTTTTGGAAGTTGAGTTTTCTAGGCTACCATGTCAAAACGGTCCAGAAACGGCCTGCTATTCATCTGGTGCGTTTTCTAGACCATTTCGACATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCGGTTATTTCAAGATATTC</pcr_primer_p1>
		<pcr_primer_p2>GAACAATTTGAGTGATTTGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGCGGTTATTTCAAGATATTCAAAAATCGAGATTTTTAGGTCACTGTAGTTGTATGATCTTCAACCACGGCTACCACATTCCCTTCCACAGCCCTATATTTCTGTACCACAAAAATATAATCTTTACTCACGTTCGTCTGAAAACGTATTCCAAATAGGAAGCCTTGTATCTAGTCTGATACTCTGCTAGATACTTTGAATCAGCCACTGGCAAGTAGTCCTCCGGAAACAAATCACTCAAATTGTTC</canonical_amplicon>
		<polymorphic_amplicon>AAGCGGTTATTTCAAGATATTCAAAAATCGAGATTTTTAGGTCACTGTAGTTGTATGATCTTCAACCACGGCTACCACATTCCCTTCCACAGCCCTATATTTCTGTACCACAAAAATAKAATCTTTACTCACGTTCGTCTGAAAACGTATTCCAAATAGGAAGCCTTGTATCTAGTCTGATACTCTGCTAGATACTTTGAATCAGCCACTGGCAAGTAGTCCTCCGGAAACAAATCACTCAAATTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19828</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>260456</contig_pos>
        <strand></strand>
        <context>AATTGTTCAC[T/A]AATTCGTCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCAGCCACTGGCAAGTAGTCCTCCGGAAACAAATCACTCAAATTGTTCAC</left_flank>
        <right_flank>AATTCGTCGAGAGTCTCGGGAAGTTCCACTCCGTACATTTGCTTGTATAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACCAGTTGTTGGATTCCAAAAACCTTCGATTCACAGCCGTTTGAATCGATGGCCTAGTTTTGGATTTCTAGGCCATCAATCTTCAAATTGATGTAACTCCCTACAAAATGAACGTTTTTGAAACCTAAAGACTGTGCAGGAATTCTCTGACATCTAGCCAATGAAATTGTGGCCTAGGTTCCCGGATTTCTAGGGCATTGGTGGCCTAGAAATCCAAAATTTTAGAAAAAGTAAGCCATTTATTTCAAGCGGTTATTTCAAGATATTCAAAAATCGAGATTTTTAGGTCACTGTAGTTGTATGATCTTCAACCACGGCTACCACATTCCCTTCCACAGCCCTATATTTCTGTACCACAAAAATATAATCTTTACTCACGTTCGTCTGAAAACGTATTCCAAATAGGAAGCCTTGTATCTAGTCTGATACTCTGCTAGATACTTTGAATCAGCCACTGGCAAGTAGTCCTCCGGAAACAAATCACTCAAATTGTTCACTAATTCGTCGAGAGTCTCGGGAAGTTCCACTCCGTACATTTGCTTGTATAAAAATGCCAAATCGATGAGACCATTGTGAAGACAAAGTGTGCTTGAAGAGCCTAGCAACTCATGGAATAGCGTTTTCAGTGGACAATTGGTTCCCTGGAATTAGTGTACTGTGTCGATTATGCATATGCGATGAAAGTCGACTGAATCTCGATTAAAATCGACTTTTATCGATTTCGAATCGACTTGAATGTCCGCTAGGATTATTTGAAATGGTGGCCGATTTTTTTGGAAGTTGAGTTTTCTAGGCTACCATGTCAAAACGGTCCAGAAACGGCCTGCTATTCATCTGGTGCGTTTTCTAGACCATTTCGACATGGTGGCCTAACTTTTGCAAGTTGAGTTTTCTAGGCCATTATGATAAAATGTTCTAGAAATGGTCTGATATTTACCTGGTGATTTTTCTAGACCATTTTGACATGGTGGCCGAACTTTTGCTAGTTGATTTTTCTA</canonical>
            <polymorphic>ACACCAGTTGTTGGATTCCAAAAACCTTCGATTCACAGCCGTTTGAATCGATGGCCTAGTTTTGGATTTCTAGGCCATCAATCTTCAAATTGATGTAACTCCCTACAAAATGAACGTTTTTGAAACCTAAAGACTGTGCAGGAATTCTCTGACATCTAGCCAATGAAATTGTGGCCTAGGTTCCCGGATTTCTAGGGCATTGGTGGCCTAGAAATCCAAAATTTTAGAAAAAGTAAGCCATTTATTTCAAGCGGTTATTTCAAGATATTCAAAAATCGAGATTTTTAGGTCACTGTAGTTGTATGATCTTCAACCACGGCTACCACATTCCCTTCCACAGCCCTATATTTCTGTACCACAAAAATATAATCTTTACTCACGTTCGTCTGAAAACGTATTCCAAATAGGAAGCCTTGTATCTAGTCTGATACTCTGCTAGATACTTTGAATCAGCCACTGGCAAGTAGTCCTCCGGAAACAAATCACTCAAATTGTTCACWAATTCGTCGAGAGTCTCGGGAAGTTCCACTCCGTACATTTGCTTGTATAAAAATGCCAAATCGATGAGACCATTGTGAAGACAAAGTGTGCTTGAAGAGCCTAGCAACTCATGGAATAGCGTTTTCAGTGGACAATTGGTTCCCTGGAATTAGTGTACTGTGTCGATTATGCATATGCGATGAAAGTCGACTGAATCTCGATTAAAATCGACTTTTATCGATTTCGAATCGACTTGAATGTCCGCTAGGATTATTTGAAATGGTGGCCGATTTTTTTGGAAGTTGAGTTTTCTAGGCTACCATGTCAAAACGGTCCAGAAACGGCCTGCTATTCATCTGGTGCGTTTTCTAGACCATTTCGACATGGTGGCCTAACTTTTGCAAGTTGAGTTTTCTAGGCCATTATGATAAAATGTTCTAGAAATGGTCTGATATTTACCTGGTGATTTTTCTAGACCATTTTGACATGGTGGCCGAACTTTTGCTAGTTGATTTTTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTGAAAACGTATTCCAAATAG</pcr_primer_p1>
		<pcr_primer_p2>GAAAACGCTATTCCATGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTCTGAAAACGTATTCCAAATAGGAAGCCTTGTATCTAGTCTGATACTCTGCTAGATACTTTGAATCAGCCACTGGCAAGTAGTCCTCCGGAAACAAATCACTCAAATTGTTCACTAATTCGTCGAGAGTCTCGGGAAGTTCCACTCCGTACATTTGCTTGTATAAAAATGCCAAATCGATGAGACCATTGTGAAGACAAAGTGTGCTTGAAGAGCCTAGCAACTCATGGAATAGCGTTTTC</canonical_amplicon>
		<polymorphic_amplicon>GTCTGAAAACGTATTCCAAATAGGAAGCCTTGTATCTAGTCTGATACTCTGCTAGATACTTTGAATCAGCCACTGGCAAGTAGTCCTCCGGAAACAAATCACTCAAATTGTTCACWAATTCGTCGAGAGTCTCGGGAAGTTCCACTCCGTACATTTGCTTGTATAAAAATGCCAAATCGATGAGACCATTGTGAAGACAAAGTGTGCTTGAAGAGCCTAGCAACTCATGGAATAGCGTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19829</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>265124</contig_pos>
        <strand>+</strand>
        <context>ACAGTTAAGG[A/T]GGTCGACCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTTCGAGAAGTCCTATGAGCCGCCGGACAGCCGTCGGGGACAGTTAAGG</left_flank>
        <right_flank>GGTCGACCATTCTTGTATTAAACTCTGATTTATACCTTATCAAGGACTAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTATGGCTCTAATGACATGGTTTAGCAGATCTTACGACATACATTTGAATTATATTTGATGAAAATGAAGATACTATTCAATCACGAATCACAGATACCGTACTTCCTTTAATAGGAGTCTACCCAAGTCGTTAAATTTGAGCTGAATTGTCTCCGTTCTTTTAAAAGATATCAAAAATTTATCAACTGATAAATTATTCATCATAATATCAGCGACATTTTATCTATTGAAAATCGTTCGATATCTTTCAAAGAAACCGAGATAATTGAGCTCAAAGCTGACGTATTGGGTAGGCTTCTATTAAAGCAAATACGGTAGTCAGAATTCCTCTAATAGAGGATGAGAGAGCTGTGAAATTGAAGGAAGTCCGGCTGACTAGCTAGCTCAACTAACATAACGACATCATTATCTACCGAGCTAGCTTATAAGAATTGAGTCGCCTGAGCTCTTTCGAGAAGTCCTATGAGCCGCCGGACAGCCGTCGGGGACAGTTAAGGTGGTCGACCATTCTTGTATTAAACTCTGATTTATACCTTATCAAGGACTAACTACTAGATGCATCTAGGAACTTAGAGCAGGGCCTCATATCTCATTTCTAGACTTATTCAGACCAGAATATCCATTTCCCGAATCTTCGAAAAAAAAATTGGAAACTGTTTTCCCATAAGTACCGTATTTCCTCTAATAGAGGCTAGCCAAGCCGTCTATGTTAAGCTCATTTATCTCGGCCCCTTCAAAAGATATCAAGAATGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACCATTTATCAGTTGACAAATTCTTGATAACTATTACAGGAAATGGGATAATTGAGCTCAAAGTAGACGGTATCTTTTTCTCTTTCCATCCCATCCCAAGACTCCGCCCCTTCCCTTCAATTTTCTGCCCAGTTGAACCCCGCCCATGTGACTTCGATCATCATCGTCCACTCCCAATTTTACCCATTTCAACATCTCTCTGTCTCTCCTC</canonical>
            <polymorphic>ACTATGGCTCTAATGACATGGTTTAGCAGATCTTACGACATACATTTGAATTATATTTGATGAAAATGAAGATACTATTCAATCACGAATCACAGATACCGTACTTCCTTTAATAGGAGTCTACCCAAGTCGTTAAATTTGAGCTGAATTGTCTCCGTTCTTTTAAAAGATATCAAAAATTTATCAACTGATAAATTATTCATCATAATATCAGCGACATTTTATCTATTGAAAATCGTTCGATATCTTTCAAAGAAACCGAGATAATTGAGCTCAAAGCTGACGTATTGGGTAGGCTTCTATTAAAGCAAATACGGTAGTCAGAATTCCTCTAATAGAGGATGAGAGAGCTGTGAAATTGAAGGAAGTCCGGCTGACTAGCTAGCTCAACTAACATAACGACATCATTATCTACCGAGCTAGCTTATAAGAATTGAGTCGCCTGAGCTCTTTCGAGAAGTCCTATGAGCCGCCGGACAGCCGTCGGGGACAGTTAAGGWGGTCGACCATTCTTGTATTAAACTCTGATTTATACCTTATCAAGGACTAACTACTAGATGCATCTAGGAACTTAGAGCAGGGCCTCATATCTCATTTCTAGACTTATTCAGACCAGAATATCCATTTCCCGAATCTTCGAAAAAAAAATTGGAAACTGTTTTCCCATAAGTACCGTATTTCCTCTAATAGAGGCTAGCCAAGCCGTCTATGTTAAGCTCATTTATCTCGGCCCCTTCAAAAGATATCAAGAATGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACCATTTATCAGTTGACAAATTCTTGATAACTATTACAGGAAATGGGATAATTGAGCTCAAAGTAGACGGTATCTTTTTCTCTTTCCATCCCATCCCAAGACTCCGCCCCTTCCCTTCAATTTTCTGCCCAGTTGAACCCCGCCCATGTGACTTCGATCATCATCGTCCACTCCCAATTTTACCCATTTCAACATCTCTCTGTCTCTCCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>263 255 154 146 85 41 29 20 7</canonical_bands>
                <polymorphic_bands>401 263 154 85 41 29 20 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAGCTAGCTTATAAGAATTGAG</pcr_primer_p1>
		<pcr_primer_p2>GGGAAAACAGTTTCCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGAGCTAGCTTATAAGAATTGAGTCGCCTGAGCTCTTTCGAGAAGTCCTATGAGCCGCCGGACAGCCGTCGGGGACAGTTAAGGTGGTCGACCATTCTTGTATTAAACTCTGATTTATACCTTATCAAGGACTAACTACTAGATGCATCTAGGAACTTAGAGCAGGGCCTCATATCTCATTTCTAGACTTATTCAGACCAGAATATCCATTTCCCGAATCTTCGAAAAAAAAATTGGAAACTGTTTTCCC</canonical_amplicon>
		<polymorphic_amplicon>CGAGCTAGCTTATAAGAATTGAGTCGCCTGAGCTCTTTCGAGAAGTCCTATGAGCCGCCGGACAGCCGTCGGGGACAGTTAAGGWGGTCGACCATTCTTGTATTAAACTCTGATTTATACCTTATCAAGGACTAACTACTAGATGCATCTAGGAACTTAGAGCAGGGCCTCATATCTCATTTCTAGACTTATTCAGACCAGAATATCCATTTCCCGAATCTTCGAAAAAAAAATTGGAAACTGTTTTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19830</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>265018</contig_pos>
        <strand>+</strand>
        <context>AGCTCAACTA[A/G]CATAACGACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGAGAGCTGTGAAATTGAAGGAAGTCCGGCTGACTAGCTAGCTCAACTA</left_flank>
        <right_flank>CATAACGACATCATTATCTACCGAGCTAGCTTATAAGAATTGAGTCGCCT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGCTCTCCACAAATTTTCAACAATTTAACACGGCGTTTTGCAAGCATTGTTTAGAAAAAGCAAATAAAACGGTGCCTTTTTAGTGCCAACTTGCAAAGAACATCGACTATGGCTCTAATGACATGGTTTAGCAGATCTTACGACATACATTTGAATTATATTTGATGAAAATGAAGATACTATTCAATCACGAATCACAGATACCGTACTTCCTTTAATAGGAGTCTACCCAAGTCGTTAAATTTGAGCTGAATTGTCTCCGTTCTTTTAAAAGATATCAAAAATTTATCAACTGATAAATTATTCATCATAATATCAGCGACATTTTATCTATTGAAAATCGTTCGATATCTTTCAAAGAAACCGAGATAATTGAGCTCAAAGCTGACGTATTGGGTAGGCTTCTATTAAAGCAAATACGGTAGTCAGAATTCCTCTAATAGAGGATGAGAGAGCTGTGAAATTGAAGGAAGTCCGGCTGACTAGCTAGCTCAACTAACATAACGACATCATTATCTACCGAGCTAGCTTATAAGAATTGAGTCGCCTGAGCTCTTTCGAGAAGTCCTATGAGCCGCCGGACAGCCGTCGGGGACAGTTAAGGTGGTCGACCATTCTTGTATTAAACTCTGATTTATACCTTATCAAGGACTAACTACTAGATGCATCTAGGAACTTAGAGCAGGGCCTCATATCTCATTTCTAGACTTATTCAGACCAGAATATCCATTTCCCGAATCTTCGAAAAAAAAATTGGAAACTGTTTTCCCATAAGTACCGTATTTCCTCTAATAGAGGCTAGCCAAGCCGTCTATGTTAAGCTCATTTATCTCGGCCCCTTCAAAAGATATCAAGAATGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACCATTTATCAGTTGACAAATTCTTGATAACTATTACAGGAAATGGGATAATTGAGCTCAAAGTAGACGGTATCTTTTTCTCTTTCCATCCCATCCCAAGACTCC</canonical>
            <polymorphic>TAGCTCTCCACAAATTTTCAACAATTTAACACGGCGTTTTGCAAGCATTGTTTAGAAAAAGCAAATAAAACGGTGCCTTTTTAGTGCCAACTTGCAAAGAACATCGACTATGGCTCTAATGACATGGTTTAGCAGATCTTACGACATACATTTGAATTATATTTGATGAAAATGAAGATACTATTCAATCACGAATCACAGATACCGTACTTCCTTTAATAGGAGTCTACCCAAGTCGTTAAATTTGAGCTGAATTGTCTCCGTTCTTTTAAAAGATATCAAAAATTTATCAACTGATAAATTATTCATCATAATATCAGCGACATTTTATCTATTGAAAATCGTTCGATATCTTTCAAAGAAACCGAGATAATTGAGCTCAAAGCTGACGTATTGGGTAGGCTTCTATTAAAGCAAATACGGTAGTCAGAATTCCTCTAATAGAGGATGAGAGAGCTGTGAAATTGAAGGAAGTCCGGCTGACTAGCTAGCTCAACTARCATAACGACATCATTATCTACCGAGCTAGCTTATAAGAATTGAGTCGCCTGAGCTCTTTCGAGAAGTCCTATGAGCCGCCGGACAGCCGTCGGGGACAGTTAAGGTGGTCGACCATTCTTGTATTAAACTCTGATTTATACCTTATCAAGGACTAACTACTAGATGCATCTAGGAACTTAGAGCAGGGCCTCATATCTCATTTCTAGACTTATTCAGACCAGAATATCCATTTCCCGAATCTTCGAAAAAAAAATTGGAAACTGTTTTCCCATAAGTACCGTATTTCCTCTAATAGAGGCTAGCCAAGCCGTCTATGTTAAGCTCATTTATCTCGGCCCCTTCAAAAGATATCAAGAATGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACCATTTATCAGTTGACAAATTCTTGATAACTATTACAGGAAATGGGATAATTGAGCTCAAAGTAGACGGTATCTTTTTCTCTTTCCATCCCATCCCAAGACTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGGTAGTCAGAATTCCTCTAAT</pcr_primer_p1>
		<pcr_primer_p2>TGCATCTAGTAGTTAGTCCTTGATAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACGGTAGTCAGAATTCCTCTAATAGAGGATGAGAGAGCTGTGAAATTGAAGGAAGTCCGGCTGACTAGCTAGCTCAACTAACATAACGACATCATTATCTACCGAGCTAGCTTATAAGAATTGAGTCGCCTGAGCTCTTTCGAGAAGTCCTATGAGCCGCCGGACAGCCGTCGGGGACAGTTAAGGTGGTCGACCATTCTTGTATTAAACTCTGATTTATACCTTATCAAGGACTAACTACTAGATGCA</canonical_amplicon>
		<polymorphic_amplicon>ACGGTAGTCAGAATTCCTCTAATAGAGGATGAGAGAGCTGTGAAATTGAAGGAAGTCCGGCTGACTAGCTAGCTCAACTARCATAACGACATCATTATCTACCGAGCTAGCTTATAAGAATTGAGTCGCCTGAGCTCTTTCGAGAAGTCCTATGAGCCGCCGGACAGCCGTCGGGGACAGTTAAGGTGGTCGACCATTCTTGTATTAAACTCTGATTTATACCTTATCAAGGACTAACTACTAGATGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19831</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>265003</contig_pos>
        <strand>+</strand>
        <context>TCCGGCTGAC[A/T]AGCTAGCTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCTCTAATAGAGGATGAGAGAGCTGTGAAATTGAAGGAAGTCCGGCTGAC</left_flank>
        <right_flank>AGCTAGCTCAACTAACATAACGACATCATTATCTACCGAGCTAGCTTATA</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCTATTACCAAAATAGCTCTCCACAAATTTTCAACAATTTAACACGGCGTTTTGCAAGCATTGTTTAGAAAAAGCAAATAAAACGGTGCCTTTTTAGTGCCAACTTGCAAAGAACATCGACTATGGCTCTAATGACATGGTTTAGCAGATCTTACGACATACATTTGAATTATATTTGATGAAAATGAAGATACTATTCAATCACGAATCACAGATACCGTACTTCCTTTAATAGGAGTCTACCCAAGTCGTTAAATTTGAGCTGAATTGTCTCCGTTCTTTTAAAAGATATCAAAAATTTATCAACTGATAAATTATTCATCATAATATCAGCGACATTTTATCTATTGAAAATCGTTCGATATCTTTCAAAGAAACCGAGATAATTGAGCTCAAAGCTGACGTATTGGGTAGGCTTCTATTAAAGCAAATACGGTAGTCAGAATTCCTCTAATAGAGGATGAGAGAGCTGTGAAATTGAAGGAAGTCCGGCTGACTAGCTAGCTCAACTAACATAACGACATCATTATCTACCGAGCTAGCTTATAAGAATTGAGTCGCCTGAGCTCTTTCGAGAAGTCCTATGAGCCGCCGGACAGCCGTCGGGGACAGTTAAGGTGGTCGACCATTCTTGTATTAAACTCTGATTTATACCTTATCAAGGACTAACTACTAGATGCATCTAGGAACTTAGAGCAGGGCCTCATATCTCATTTCTAGACTTATTCAGACCAGAATATCCATTTCCCGAATCTTCGAAAAAAAAATTGGAAACTGTTTTCCCATAAGTACCGTATTTCCTCTAATAGAGGCTAGCCAAGCCGTCTATGTTAAGCTCATTTATCTCGGCCCCTTCAAAAGATATCAAGAATGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACCATTTATCAGTTGACAAATTCTTGATAACTATTACAGGAAATGGGATAATTGAGCTCAAAGTAGACGGTATCTTTTTCTCTTTCCATC</canonical>
            <polymorphic>CTTCTATTACCAAAATAGCTCTCCACAAATTTTCAACAATTTAACACGGCGTTTTGCAAGCATTGTTTAGAAAAAGCAAATAAAACGGTGCCTTTTTAGTGCCAACTTGCAAAGAACATCGACTATGGCTCTAATGACATGGTTTAGCAGATCTTACGACATACATTTGAATTATATTTGATGAAAATGAAGATACTATTCAATCACGAATCACAGATACCGTACTTCCTTTAATAGGAGTCTACCCAAGTCGTTAAATTTGAGCTGAATTGTCTCCGTTCTTTTAAAAGATATCAAAAATTTATCAACTGATAAATTATTCATCATAATATCAGCGACATTTTATCTATTGAAAATCGTTCGATATCTTTCAAAGAAACCGAGATAATTGAGCTCAAAGCTGACGTATTGGGTAGGCTTCTATTAAAGCAAATACGGTAGTCAGAATTCCTCTAATAGAGGATGAGAGAGCTGTGAAATTGAAGGAAGTCCGGCTGACWAGCTAGCTCAACTAACATAACGACATCATTATCTACCGAGCTAGCTTATAAGAATTGAGTCGCCTGAGCTCTTTCGAGAAGTCCTATGAGCCGCCGGACAGCCGTCGGGGACAGTTAAGGTGGTCGACCATTCTTGTATTAAACTCTGATTTATACCTTATCAAGGACTAACTACTAGATGCATCTAGGAACTTAGAGCAGGGCCTCATATCTCATTTCTAGACTTATTCAGACCAGAATATCCATTTCCCGAATCTTCGAAAAAAAAATTGGAAACTGTTTTCCCATAAGTACCGTATTTCCTCTAATAGAGGCTAGCCAAGCCGTCTATGTTAAGCTCATTTATCTCGGCCCCTTCAAAAGATATCAAGAATGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACCATTTATCAGTTGACAAATTCTTGATAACTATTACAGGAAATGGGATAATTGAGCTCAAAGTAGACGGTATCTTTTTCTCTTTCCATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 185 134 96 38 34 10 4</canonical_bands>
                <polymorphic_bands>503 185 134 96 38 34 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGGTAGTCAGAATTCCTCTAAT</pcr_primer_p1>
		<pcr_primer_p2>TGCATCTAGTAGTTAGTCCTTGATAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACGGTAGTCAGAATTCCTCTAATAGAGGATGAGAGAGCTGTGAAATTGAAGGAAGTCCGGCTGACTAGCTAGCTCAACTAACATAACGACATCATTATCTACCGAGCTAGCTTATAAGAATTGAGTCGCCTGAGCTCTTTCGAGAAGTCCTATGAGCCGCCGGACAGCCGTCGGGGACAGTTAAGGTGGTCGACCATTCTTGTATTAAACTCTGATTTATACCTTATCAAGGACTAACTACTAGATGCA</canonical_amplicon>
		<polymorphic_amplicon>ACGGTAGTCAGAATTCCTCTAATAGAGGATGAGAGAGCTGTGAAATTGAAGGAAGTCCGGCTGACWAGCTAGCTCAACTAACATAACGACATCATTATCTACCGAGCTAGCTTATAAGAATTGAGTCGCCTGAGCTCTTTCGAGAAGTCCTATGAGCCGCCGGACAGCCGTCGGGGACAGTTAAGGTGGTCGACCATTCTTGTATTAAACTCTGATTTATACCTTATCAAGGACTAACTACTAGATGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19832</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>264964</contig_pos>
        <strand></strand>
        <context>CTCTAATAGA[G/A]GATGAGAGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGGTAGGCTTCTATTAAAGCAAATACGGTAGTCAGAATTCCTCTAATAGA</left_flank>
        <right_flank>GATGAGAGAGCTGTGAAATTGAAGGAAGTCCGGCTGACTAGCTAGCTCAA</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAAGATGAAAATAGGCTCAAAGTTGAAAGTTGGGCCCTTCTATTACCAAAATAGCTCTCCACAAATTTTCAACAATTTAACACGGCGTTTTGCAAGCATTGTTTAGAAAAAGCAAATAAAACGGTGCCTTTTTAGTGCCAACTTGCAAAGAACATCGACTATGGCTCTAATGACATGGTTTAGCAGATCTTACGACATACATTTGAATTATATTTGATGAAAATGAAGATACTATTCAATCACGAATCACAGATACCGTACTTCCTTTAATAGGAGTCTACCCAAGTCGTTAAATTTGAGCTGAATTGTCTCCGTTCTTTTAAAAGATATCAAAAATTTATCAACTGATAAATTATTCATCATAATATCAGCGACATTTTATCTATTGAAAATCGTTCGATATCTTTCAAAGAAACCGAGATAATTGAGCTCAAAGCTGACGTATTGGGTAGGCTTCTATTAAAGCAAATACGGTAGTCAGAATTCCTCTAATAGAGGATGAGAGAGCTGTGAAATTGAAGGAAGTCCGGCTGACTAGCTAGCTCAACTAACATAACGACATCATTATCTACCGAGCTAGCTTATAAGAATTGAGTCGCCTGAGCTCTTTCGAGAAGTCCTATGAGCCGCCGGACAGCCGTCGGGGACAGTTAAGGTGGTCGACCATTCTTGTATTAAACTCTGATTTATACCTTATCAAGGACTAACTACTAGATGCATCTAGGAACTTAGAGCAGGGCCTCATATCTCATTTCTAGACTTATTCAGACCAGAATATCCATTTCCCGAATCTTCGAAAAAAAAATTGGAAACTGTTTTCCCATAAGTACCGTATTTCCTCTAATAGAGGCTAGCCAAGCCGTCTATGTTAAGCTCATTTATCTCGGCCCCTTCAAAAGATATCAAGAATGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACCATTTATCAGTTGACAAATTCTTGATAACTATTACAGGAAATGGGATAA</canonical>
            <polymorphic>GAAAAAGATGAAAATAGGCTCAAAGTTGAAAGTTGGGCCCTTCTATTACCAAAATAGCTCTCCACAAATTTTCAACAATTTAACACGGCGTTTTGCAAGCATTGTTTAGAAAAAGCAAATAAAACGGTGCCTTTTTAGTGCCAACTTGCAAAGAACATCGACTATGGCTCTAATGACATGGTTTAGCAGATCTTACGACATACATTTGAATTATATTTGATGAAAATGAAGATACTATTCAATCACGAATCACAGATACCGTACTTCCTTTAATAGGAGTCTACCCAAGTCGTTAAATTTGAGCTGAATTGTCTCCGTTCTTTTAAAAGATATCAAAAATTTATCAACTGATAAATTATTCATCATAATATCAGCGACATTTTATCTATTGAAAATCGTTCGATATCTTTCAAAGAAACCGAGATAATTGAGCTCAAAGCTGACGTATTGGGTAGGCTTCTATTAAAGCAAATACGGTAGTCAGAATTCCTCTAATAGARGATGAGAGAGCTGTGAAATTGAAGGAAGTCCGGCTGACTAGCTAGCTCAACTAACATAACGACATCATTATCTACCGAGCTAGCTTATAAGAATTGAGTCGCCTGAGCTCTTTCGAGAAGTCCTATGAGCCGCCGGACAGCCGTCGGGGACAGTTAAGGTGGTCGACCATTCTTGTATTAAACTCTGATTTATACCTTATCAAGGACTAACTACTAGATGCATCTAGGAACTTAGAGCAGGGCCTCATATCTCATTTCTAGACTTATTCAGACCAGAATATCCATTTCCCGAATCTTCGAAAAAAAAATTGGAAACTGTTTTCCCATAAGTACCGTATTTCCTCTAATAGAGGCTAGCCAAGCCGTCTATGTTAAGCTCATTTATCTCGGCCCCTTCAAAAGATATCAAGAATGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACCATTTATCAGTTGACAAATTCTTGATAACTATTACAGGAAATGGGATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTCAATCACGAATCACAGAT</pcr_primer_p1>
		<pcr_primer_p2>CTAGCTCGGTAGATAATGATGTC</pcr_primer_p2>
		<pcr_amplicon_size>349</pcr_amplicon_size>
		<canonical_amplicon>CTATTCAATCACGAATCACAGATACCGTACTTCCTTTAATAGGAGTCTACCCAAGTCGTTAAATTTGAGCTGAATTGTCTCCGTTCTTTTAAAAGATATCAAAAATTTATCAACTGATAAATTATTCATCATAATATCAGCGACATTTTATCTATTGAAAATCGTTCGATATCTTTCAAAGAAACCGAGATAATTGAGCTCAAAGCTGACGTATTGGGTAGGCTTCTATTAAAGCAAATACGGTAGTCAGAATTCCTCTAATAGAGGATGAGAGAGCTGTGAAATTGAAGGAAGTCCGGCTGACTAGCTAGCTCAACTAACATAACGACATCATTATCTACCGAGCTAG</canonical_amplicon>
		<polymorphic_amplicon>CTATTCAATCACGAATCACAGATACCGTACTTCCTTTAATAGGAGTCTACCCAAGTCGTTAAATTTGAGCTGAATTGTCTCCGTTCTTTTAAAAGATATCAAAAATTTATCAACTGATAAATTATTCATCATAATATCAGCGACATTTTATCTATTGAAAATCGTTCGATATCTTTCAAAGAAACCGAGATAATTGAGCTCAAAGCTGACGTATTGGGTAGGCTTCTATTAAAGCAAATACGGTAGTCAGAATTCCTCTAATAGARGATGAGAGAGCTGTGAAATTGAAGGAAGTCCGGCTGACTAGCTAGCTCAACTAACATAACGACATCATTATCTACCGAGCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19833</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>393729</contig_pos>
        <strand></strand>
        <context>ACATCAATCA[T/C]CATGTCAGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATGCTCCACGTGGCGGTCTTGATCTGTCCGGTCAACGTCACATCAATCA</left_flank>
        <right_flank>CATGTCAGAGGTGCTATGTACGATCGTCAAGGTGGCAACGACAACTACAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAACGTCTTCTGGAGACTCTCAAATCGGTGTATCCAACGTTGACTGATGAGGAAAAGTATAGAAACACACGCGGTCCTAACCGTATTTTCATCGGAAGAAATCACAAATCCTTCGCTTTCTTCCAACAAGTCGCCGAATCGAAATCCAATGATCTCGTAGACTTAGATCCATCGCTTCTCAACGGAGTCAGCGGAAAGATCTCCTACGATTCGACGGCCACTGCTCCAGGACTTCCATTCCCATCTCCAGTCAGCCACGAAGAGTGCCAAGACTTGCCGACGAACTGTGGAATCTGCGTTCTCTACGAGGATCCCGAATACCCGGCCAACTACGTTTTCCCAGCTGTCCGTCTCGACGGTGCTAAGGAAGCCGAGAAGACGTTAAGACCAGAAGACTGGAATGAGCGACGTGATGGTCGTTTCAACCCAACGATTGGATTCAACCGGAATGCTCCACGTGGCGGTCTTGATCTGTCCGGTCAACGTCACATCAATCATCATGTCAGAGGTGCTATGTACGATCGTCAAGGTGGCAACGACAACTACAGAGGAGGTTATCGTGGAGGGTATCAAGGAGGATATGACGATAGAAGAGGTGGAAGAGGAGGTGGTGGTTATCGTGGGGGATACAACGATAGCAGGCCTGATTTCGGTAGAAATTATGCAGGAAGAGAAGGTAAGAAGCCATAAGTTACCTTAAAGGTGGGGGGACAGGAGATTTTCCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACTGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCAGGCGTGCGCTTTCTCTCTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCATTAAGAGCTCTATTAAAAGGGCCCCTGTAAT</canonical>
            <polymorphic>AACAACGTCTTCTGGAGACTCTCAAATCGGTGTATCCAACGTTGACTGATGAGGAAAAGTATAGAAACACACGCGGTCCTAACCGTATTTTCATCGGAAGAAATCACAAATCCTTCGCTTTCTTCCAACAAGTCGCCGAATCGAAATCCAATGATCTCGTAGACTTAGATCCATCGCTTCTCAACGGAGTCAGCGGAAAGATCTCCTACGATTCGACGGCCACTGCTCCAGGACTTCCATTCCCATCTCCAGTCAGCCACGAAGAGTGCCAAGACTTGCCGACGAACTGTGGAATCTGCGTTCTCTACGAGGATCCCGAATACCCGGCCAACTACGTTTTCCCAGCTGTCCGTCTCGACGGTGCTAAGGAAGCCGAGAAGACGTTAAGACCAGAAGACTGGAATGAGCGACGTGATGGTCGTTTCAACCCAACGATTGGATTCAACCGGAATGCTCCACGTGGCGGTCTTGATCTGTCCGGTCAACGTCACATCAATCAYCATGTCAGAGGTGCTATGTACGATCGTCAAGGTGGCAACGACAACTACAGAGGAGGTTATCGTGGAGGGTATCAAGGAGGATATGACGATAGAAGAGGTGGAAGAGGAGGTGGTGGTTATCGTGGGGGATACAACGATAGCAGGCCTGATTTCGGTAGAAATTATGCAGGAAGAGAAGGTAAGAAGCCATAAGTTACCTTAAAGGTGGGGGGACAGGAGATTTTCCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACTGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCAGGCGTGCGCTTTCTCTCTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCATTAAGAGCTCTATTAAAAGGGCCCCTGTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGACGTTAAGACCAGAAGAC</pcr_primer_p1>
		<pcr_primer_p2>GATAACCACCACCTCCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAAGACGTTAAGACCAGAAGACTGGAATGAGCGACGTGATGGTCGTTTCAACCCAACGATTGGATTCAACCGGAATGCTCCACGTGGCGGTCTTGATCTGTCCGGTCAACGTCACATCAATCATCATGTCAGAGGTGCTATGTACGATCGTCAAGGTGGCAACGACAACTACAGAGGAGGTTATCGTGGAGGGTATCAAGGAGGATATGACGATAGAAGAGGTGGAAGAGGAGGTGGTGGTTATC</canonical_amplicon>
		<polymorphic_amplicon>AGAAGACGTTAAGACCAGAAGACTGGAATGAGCGACGTGATGGTCGTTTCAACCCAACGATTGGATTCAACCGGAATGCTCCACGTGGCGGTCTTGATCTGTCCGGTCAACGTCACATCAATCAYCATGTCAGAGGTGCTATGTACGATCGTCAAGGTGGCAACGACAACTACAGAGGAGGTTATCGTGGAGGGTATCAAGGAGGATATGACGATAGAAGAGGTGGAAGAGGAGGTGGTGGTTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19834</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>395638</contig_pos>
        <strand></strand>
        <context>GCRAAAAAAA[A/G]CTGTAACTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTACGGTCTCTTTTTTGCGGGGAAAATGTAGGGAAGTGAGCAAAAAAAA</left_flank>
        <right_flank>CTGTAACTCGGAAATAAATGCATATTTTTGGAAGAAAATGTGAGATTATG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGAATTTATGTTGTTTTGTCTGCAATCCAATGTTTTTCCTGTATTTTTAGCATTCGGAAACCCGAAAATTGCCGGAAAAAAAATCGCAGATTTTCCGCGCGGCAGTCTTGCTCGCCAACTTCGCCCCGCCCACTTTTCCGCGGCGCGCGCATTTTTTGCGAGACCGTACAAATCGGAAGGATTTCTCGACCGGAGGAAAACGAAACGGGAGGAAACGAATCGGAAGAAAACGAAAGCGAAGGAAACGAAACGGGAGGAACGGAAGCGTGCAGCATTTTTGCAAAAAAAAGCATGCGGAAGGTTGCGAAAGGGCGGGGTCTCGCTCAGAAAGTTCAGAAAAACACGAAAGGACTCTCTTGCCCCGCCTTTAAAATCCTGCCCGCTTCCGTTCCTCCCGTTTCGTTTTCTCCCGTTTCGTTTTCCTCCGGCCGAGAAATCCTCCCGATTTGTACGGTCTCTTTTTTGCGGGGAAAATGTAGGGAAGTGAGCAAAAAAAAACTGTAACTCGGAAATAAATGCATATTTTTGGAAGAAAATGTGAGATTATGCTAATTAGAAATGGATAATTAGTATGAAATCAACATATTTCAGAAAAAAAAAACTGATTTTTACCCTTTTTAGCGTTTTTCAATTTGCGACTTGAATATTCCGAAAACTAAACGGTTTTCAGCTCGCATTTCAACACCAGTGTATTTCTCGTGTTTGCTTAACCCAAAAAAACACAAAATCGCGAGATAATTTATCAAAAAACTCCAAATTTAGGCCTTCATGTCTTTTTACCTGCAAATTTTTCAGCTTCTCTAGCCGCTCCTTCTCCGCATTCCCACCAGTAATCTCGTCCATGCGCTTCACAATTCCAGATCCAGAACAAGGCGGATCAACGATAGCAAATTTTACCTGAAAAATTAGAATTTTTGAGAGAAAACAGGGGTTTGAAACCTTCGAGAACTTCTTATCGGTCACATCAGTTTTCAAGAAATCTCCACAGAACGCGCTGG</canonical>
            <polymorphic>TTCGAATTTATGTTGTTTTGTCTGCAATCCAATGTTTTTCCTGTATTTTTAGCATTCGGAAACCCGAAAATTGCCGGAAAAAAAATCGCAGATTTTCCGCGCGGCAGTCTTGCTCGCCAACTTCGCCCCGCCCACTTTTCCGCGGCGCGCGCATTTTTTGCGAGACCGTACAAATCGGAAGGATTTCTCGACCGGAGGAAAACGAAACGGGAGGAAACGAATCGGAAGAAAACGAAAGCGAAGGAAACGAAACGGGAGGAACGGAAGCGTGCAGCATTTTTGCAAAAAAAAGCATGCGGAAGGTTGCGAAAGGGCGGGGTCTCGCTCAGAAAGTTCAGAAAAACACGAAAGGACTCTCTTGCCCCGCCTTTAAAATCCTGCCCGCTTCCGTTCCTCCCGTTTCGTTTTCTCCCGTTTCGTTTTCCTCCGGCCGAGAAATCCTCCCGATTTGTACGGTCTCTTTTTTGCGGGGAAAATGTAGGGAAGTGAGCAAAAAAAARCTGTAACTCGGAAATAAATGCATATTTTTGGAAGAAAATGTGAGATTATGCTAATTAGAAATGGATAATTAGTATGAAATCAACATATTTCAGAAAAAAAAAACTGATTTTTACCCTTTTTAGCGTTTTTCAATTTGCGACTTGAATATTCCGAAAACTAAACGGTTTTCAGCTCGCATTTCAACACCAGTGTATTTCTCGTGTTTGCTTAACCCAAAAAAACACAAAATCGCGAGATAATTTATCAAAAAACTCCAAATTTAGGCCTTCATGTCTTTTTACCTGCAAATTTTTCAGCTTCTCTAGCCGCTCCTTCTCCGCATTCCCACCAGTAATCTCGTCCATGCGCTTCACAATTCCAGATCCAGAACAAGGCGGATCAACGATAGCAAATTTTACCTGAAAAATTAGAATTTTTGAGAGAAAACAGGGGTTTGAAACCTTCGAGAACTTCTTATCGGTCACATCAGTTTTCAAGAAATCTCCACAGAACGCGCTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>336 288 167 162 47</canonical_bands>
                <polymorphic_bands>336 288 209 167</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATCCAATGTTTTTCCTGTAT</pcr_primer_p1>
		<pcr_primer_p2>AATTAGCATAATCTCACATTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>532</pcr_amplicon_size>
		<canonical_amplicon>CAATCCAATGTTTTTCCTGTATTTTTAGCATTCGGAAACCCGAAAATTGCCGGAAAAAAAATCGCAGATTTTCCGCGCGGCAGTCTTGCTCGCCAACTTCGCCCCGCCCACTTTTCCGCGGCGCGCGCATTTTTTGCGAGACCGTACAAATCGGAAGGATTTCTCGACCGGAGGAAAACGAAACGGGAGGAAACGAATCGGAAGAAAACGAAAGCGAAGGAAACGAAACGGGAGGAACGGAAGCGTGCAGCATTTTTGCAAAAAAAAGCATGCGGAAGGTTGCGAAAGGGCGGGGTCTCGCTCAGAAAGTTCAGAAAAACACGAAAGGACTCTCTTGCCCCGCCTTTAAAATCCTGCCCGCTTCCGTTCCTCCCGTTTCGTTTTCTCCCGTTTCGTTTTCCTCCGGCCGAGAAATCCTCCCGATTTGTACGGTCTCTTTTTTGCGGGGAAAATGTAGGGAAGTGAGCAAAAAAAAACTGTAACTCGGAAATAAATGCATATTTTTGGAAGAAAATGTGAGATTATGCTAATT</canonical_amplicon>
		<polymorphic_amplicon>CAATCCAATGTTTTTCCTGTATTTTTAGCATTCGGAAACCCGAAAATTGCCGGAAAAAAAATCGCAGATTTTCCGCGCGGCAGTCTTGCTCGCCAACTTCGCCCCGCCCACTTTTCCGCGGCGCGCGCATTTTTTGCGAGACCGTACAAATCGGAAGGATTTCTCGACCGGAGGAAAACGAAACGGGAGGAAACGAATCGGAAGAAAACGAAAGCGAAGGAAACGAAACGGGAGGAACGGAAGCGTGCAGCATTTTTGCAAAAAAAAGCATGCGGAAGGTTGCGAAAGGGCGGGGTCTCGCTCAGAAAGTTCAGAAAAACACGAAAGGACTCTCTTGCCCCGCCTTTAAAATCCTGCCCGCTTCCGTTCCTCCCGTTTCGTTTTCTCCCGTTTCGTTTTCCTCCGGCCGAGAAATCCTCCCGATTTGTACGGTCTCTTTTTTGCGGGGAAAATGTAGGGAAGTGAGCAAAAAAAARCTGTAACTCGGAAATAAATGCATATTTTTGGAAGAAAATGTGAGATTATGCTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19835</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>421494</contig_pos>
        <strand></strand>
        <context>TTTTTGCTCT[T/G]TCAGCCGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GAAGAACTTCCGGATTTTCACTTCTTTTCCATCCTCCCAATTTTTGCTCT</left_flank>
        <right_flank>TCAGCCGATTTTTGATTTCCGTCGGAAACTTTTTTCCCCGTTTTTTTTTC</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCCCTCCCACACCAATAAAAAAAGCAAAAGAGCATTGAGTTTCAACACCTTTACGTCACTCAAAAACTCTTGCATCATCACCAAATTTTTGAAGGATTTTCCTGAAATTTCCATATACCGATTTTTTTTCAATTTCTCTCCCACACATTCTTTTCCAAAAGTATATGAGGTCTTTAGTGGGGACAAAAAGGGAAAAGAGAGGAGCAGAGTATGTTTCAATTTCTCTCTTTTTTTTGGAATATTCATGTAGTTCTTTTCATCGGAACTTTTTATATAATTTTATTTTGAGCTCATTGAGCTCTTTTTTCTGCGTCTCTCTCTTCTTCTAAATCTCACGAATTTCTTCCAATTCCTTGGCTACCCGAACTTCCAAATCATGATGGATCTTTTTGAGATTTTTGATGGACGGGCGGGTCAAAACAAAACAAAAAAATCTTTGGAAGAAAAAGAAGAACTTCCGGATTTTCACTTCTTTTCCATCCTCCCAATTTTTGCTCTTTCAGCCGATTTTTGATTTCCGTCGGAAACTTTTTTCCCCGTTTTTTTTTCCGTTTCGAACGGAAAATGACTCTCCCATTCATTGAAAAATTTTGCAAAGCGTGGGGTGTTGTCTGGGAAAATATGTGATTCATTCACAAAGTTGGCTTTTTTTTGTTTTTTTGAAGTCTCGGGCACACAAAGTACGAGTTTTCGGAACTTCCAAACATAAAAGTTTGTACCGAAATCACAAATTTTCCAAGATTCCTTGTTTGCTATAATAGAAGCCCTCCCTATTTGTGCACTCTGAGCTCAATTACCTCGGTTCCTTTAAGAGATATCAAAAATCTGCCAACTGATAAAATATTGCTGATTATATGATAAACATTTTTTCAATTGACTCATTTTTGATCTTTTACAGGAAACAGGATAAATTGGCTTAAACGGCATTTCTATCCCAGGTCTTACGGTGTGTACCAAACGATTGAGGTCATAGTTTTTTTCGAAATTTGCATTTTCGAG</canonical>
            <polymorphic>TGCCCTCCCACACCAATAAAAAAAGCAAAAGAGCATTGAGTTTCAACACCTTTACGTCACTCAAAAACTCTTGCATCATCACCAAATTTTTGAAGGATTTTCCTGAAATTTCCATATACCGATTTTTTTTCAATTTCTCTCCCACACATTCTTTTCCAAAAGTATATGAGGTCTTTAGTGGGGACAAAAAGGGAAAAGAGAGGAGCAGAGTATGTTTCAATTTCTCTCTTTTTTTTGGAATATTCATGTAGTTCTTTTCATCGGAACTTTTTATATAATTTTATTTTGAGCTCATTGAGCTCTTTTTTCTGCGTCTCTCTCTTCTTCTAAATCTCACGAATTTCTTCCAATTCCTTGGCTACCCGAACTTCCAAATCATGATGGATCTTTTTGAGATTTTTGATGGACGGGCGGGTCAAAACAAAACAAAAAAATCTTTGGAAGAAAAAGAAGAACTTCCGGATTTTCACTTCTTTTCCATCCTCCCAATTTTTGCTCTKTCAGCCGATTTTTGATTTCCGTCGGAAACTTTTTTCCCCGTTTTTTTTTCCGTTTCGAACGGAAAATGACTCTCCCATTCATTGAAAAATTTTGCAAAGCGTGGGGTGTTGTCTGGGAAAATATGTGATTCATTCACAAAGTTGGCTTTTTTTTGTTTTTTTGAAGTCTCGGGCACACAAAGTACGAGTTTTCGGAACTTCCAAACATAAAAGTTTGTACCGAAATCACAAATTTTCCAAGATTCCTTGTTTGCTATAATAGAAGCCCTCCCTATTTGTGCACTCTGAGCTCAATTACCTCGGTTCCTTTAAGAGATATCAAAAATCTGCCAACTGATAAAATATTGCTGATTATATGATAAACATTTTTTCAATTGACTCATTTTTGATCTTTTACAGGAAACAGGATAAATTGGCTTAAACGGCATTTCTATCCCAGGTCTTACGGTGTGTACCAAACGATTGAGGTCATAGTTTTTTTCGAAATTTGCATTTTCGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTAAATCTCACGAATTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>ATGAATGGGAGAGTCATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>TTCTAAATCTCACGAATTTCTTCCAATTCCTTGGCTACCCGAACTTCCAAATCATGATGGATCTTTTTGAGATTTTTGATGGACGGGCGGGTCAAAACAAAACAAAAAAATCTTTGGAAGAAAAAGAAGAACTTCCGGATTTTCACTTCTTTTCCATCCTCCCAATTTTTGCTCTTTCAGCCGATTTTTGATTTCCGTCGGAAACTTTTTTCCCCGTTTTTTTTTCCGTTTCGAACGGAAAATGACTCTCCCATTCAT</canonical_amplicon>
		<polymorphic_amplicon>TTCTAAATCTCACGAATTTCTTCCAATTCCTTGGCTACCCGAACTTCCAAATCATGATGGATCTTTTTGAGATTTTTGATGGACGGGCGGGTCAAAACAAAACAAAAAAATCTTTGGAAGAAAAAGAAGAACTTCCGGATTTTCACTTCTTTTCCATCCTCCCAATTTTTGCTCTKTCAGCCGATTTTTGATTTCCGTCGGAAACTTTTTTCCCCGTTTTTTTTTCCGTTTCGAACGGAAAATGACTCTCCCATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19836</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>421590</contig_pos>
        <strand></strand>
        <context>AAAATTTTGC[A/T]AAGCGTGGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTCCGTTTCGAACGGAAAATGACTCTCCCATTCATTGAAAAATTTTGC</left_flank>
        <right_flank>AAGCGTGGGGTGTTGTCTGGGAAAATATGTGATTCATTCACAAAGTTGGC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTCCTGAAATTTCCATATACCGATTTTTTTTCAATTTCTCTCCCACACATTCTTTTCCAAAAGTATATGAGGTCTTTAGTGGGGACAAAAAGGGAAAAGAGAGGAGCAGAGTATGTTTCAATTTCTCTCTTTTTTTTGGAATATTCATGTAGTTCTTTTCATCGGAACTTTTTATATAATTTTATTTTGAGCTCATTGAGCTCTTTTTTCTGCGTCTCTCTCTTCTTCTAAATCTCACGAATTTCTTCCAATTCCTTGGCTACCCGAACTTCCAAATCATGATGGATCTTTTTGAGATTTTTGATGGACGGGCGGGTCAAAACAAAACAAAAAAATCTTTGGAAGAAAAAGAAGAACTTCCGGATTTTCACTTCTTTTCCATCCTCCCAATTTTTGCTCTTTCAGCCGATTTTTGATTTCCGTCGGAAACTTTTTTCCCCGTTTTTTTTTCCGTTTCGAACGGAAAATGACTCTCCCATTCATTGAAAAATTTTGCAAAGCGTGGGGTGTTGTCTGGGAAAATATGTGATTCATTCACAAAGTTGGCTTTTTTTTGTTTTTTTGAAGTCTCGGGCACACAAAGTACGAGTTTTCGGAACTTCCAAACATAAAAGTTTGTACCGAAATCACAAATTTTCCAAGATTCCTTGTTTGCTATAATAGAAGCCCTCCCTATTTGTGCACTCTGAGCTCAATTACCTCGGTTCCTTTAAGAGATATCAAAAATCTGCCAACTGATAAAATATTGCTGATTATATGATAAACATTTTTTCAATTGACTCATTTTTGATCTTTTACAGGAAACAGGATAAATTGGCTTAAACGGCATTTCTATCCCAGGTCTTACGGTGTGTACCAAACGATTGAGGTCATAGTTTTTTTCGAAATTTGCATTTTCGAGTAATCCGAGTCATTGACCACTCAAAACCAGTTTGATCACACTGAGTTTTTTCGTGTATTTTATGAATTTCGATTTTTTGACCGTAACACAAAATTC</canonical>
            <polymorphic>ATTTTCCTGAAATTTCCATATACCGATTTTTTTTCAATTTCTCTCCCACACATTCTTTTCCAAAAGTATATGAGGTCTTTAGTGGGGACAAAAAGGGAAAAGAGAGGAGCAGAGTATGTTTCAATTTCTCTCTTTTTTTTGGAATATTCATGTAGTTCTTTTCATCGGAACTTTTTATATAATTTTATTTTGAGCTCATTGAGCTCTTTTTTCTGCGTCTCTCTCTTCTTCTAAATCTCACGAATTTCTTCCAATTCCTTGGCTACCCGAACTTCCAAATCATGATGGATCTTTTTGAGATTTTTGATGGACGGGCGGGTCAAAACAAAACAAAAAAATCTTTGGAAGAAAAAGAAGAACTTCCGGATTTTCACTTCTTTTCCATCCTCCCAATTTTTGCTCTTTCAGCCGATTTTTGATTTCCGTCGGAAACTTTTTTCCCCGTTTTTTTTTCCGTTTCGAACGGAAAATGACTCTCCCATTCATTGAAAAATTTTGCWAAGCGTGGGGTGTTGTCTGGGAAAATATGTGATTCATTCACAAAGTTGGCTTTTTTTTGTTTTTTTGAAGTCTCGGGCACACAAAGTACGAGTTTTCGGAACTTCCAAACATAAAAGTTTGTACCGAAATCACAAATTTTCCAAGATTCCTTGTTTGCTATAATAGAAGCCCTCCCTATTTGTGCACTCTGAGCTCAATTACCTCGGTTCCTTTAAGAGATATCAAAAATCTGCCAACTGATAAAATATTGCTGATTATATGATAAACATTTTTTCAATTGACTCATTTTTGATCTTTTACAGGAAACAGGATAAATTGGCTTAAACGGCATTTCTATCCCAGGTCTTACGGTGTGTACCAAACGATTGAGGTCATAGTTTTTTTCGAAATTTGCATTTTCGAGTAATCCGAGTCATTGACCACTCAAAACCAGTTTGATCACACTGAGTTTTTTCGTGTATTTTATGAATTTCGATTTTTTGACCGTAACACAAAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>498 210 186 106</canonical_bands>
                <polymorphic_bands>684 210 106</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGTCAAAACAAAACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAGCCAACTTTGTGAATG</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>GGGTCAAAACAAAACAAAAAAATCTTTGGAAGAAAAAGAAGAACTTCCGGATTTTCACTTCTTTTCCATCCTCCCAATTTTTGCTCTTTCAGCCGATTTTTGATTTCCGTCGGAAACTTTTTTCCCCGTTTTTTTTTCCGTTTCGAACGGAAAATGACTCTCCCATTCATTGAAAAATTTTGCAAAGCGTGGGGTGTTGTCTGGGAAAATATGTGATTCATTCACAAAGTTGGCTTTT</canonical_amplicon>
		<polymorphic_amplicon>GGGTCAAAACAAAACAAAAAAATCTTTGGAAGAAAAAGAAGAACTTCCGGATTTTCACTTCTTTTCCATCCTCCCAATTTTTGCTCTTTCAGCCGATTTTTGATTTCCGTCGGAAACTTTTTTCCCCGTTTTTTTTTCCGTTTCGAACGGAAAATGACTCTCCCATTCATTGAAAAATTTTGCWAAGCGTGGGGTGTTGTCTGGGAAAATATGTGATTCATTCACAAAGTTGGCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19837</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>421606</contig_pos>
        <strand></strand>
        <context>TGGGGTGTTG[T/C]CTGGGAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAAAATGACTCTCCCATTCATTGAAAAATTTTGCAAAGCGTGGGGTGTTG</left_flank>
        <right_flank>CTGGGAAAATATGTGATTCATTCACAAAGTTGGCTTTTTTTTGTTTTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATATACCGATTTTTTTTCAATTTCTCTCCCACACATTCTTTTCCAAAAGTATATGAGGTCTTTAGTGGGGACAAAAAGGGAAAAGAGAGGAGCAGAGTATGTTTCAATTTCTCTCTTTTTTTTGGAATATTCATGTAGTTCTTTTCATCGGAACTTTTTATATAATTTTATTTTGAGCTCATTGAGCTCTTTTTTCTGCGTCTCTCTCTTCTTCTAAATCTCACGAATTTCTTCCAATTCCTTGGCTACCCGAACTTCCAAATCATGATGGATCTTTTTGAGATTTTTGATGGACGGGCGGGTCAAAACAAAACAAAAAAATCTTTGGAAGAAAAAGAAGAACTTCCGGATTTTCACTTCTTTTCCATCCTCCCAATTTTTGCTCTTTCAGCCGATTTTTGATTTCCGTCGGAAACTTTTTTCCCCGTTTTTTTTTCCGTTTCGAACGGAAAATGACTCTCCCATTCATTGAAAAATTTTGCAAAGCGTGGGGTGTTGTCTGGGAAAATATGTGATTCATTCACAAAGTTGGCTTTTTTTTGTTTTTTTGAAGTCTCGGGCACACAAAGTACGAGTTTTCGGAACTTCCAAACATAAAAGTTTGTACCGAAATCACAAATTTTCCAAGATTCCTTGTTTGCTATAATAGAAGCCCTCCCTATTTGTGCACTCTGAGCTCAATTACCTCGGTTCCTTTAAGAGATATCAAAAATCTGCCAACTGATAAAATATTGCTGATTATATGATAAACATTTTTTCAATTGACTCATTTTTGATCTTTTACAGGAAACAGGATAAATTGGCTTAAACGGCATTTCTATCCCAGGTCTTACGGTGTGTACCAAACGATTGAGGTCATAGTTTTTTTCGAAATTTGCATTTTCGAGTAATCCGAGTCATTGACCACTCAAAACCAGTTTGATCACACTGAGTTTTTTCGTGTATTTTATGAATTTCGATTTTTTGACCGTAACACAAAATTCGGAAATTCAGTAGACG</canonical>
            <polymorphic>CATATACCGATTTTTTTTCAATTTCTCTCCCACACATTCTTTTCCAAAAGTATATGAGGTCTTTAGTGGGGACAAAAAGGGAAAAGAGAGGAGCAGAGTATGTTTCAATTTCTCTCTTTTTTTTGGAATATTCATGTAGTTCTTTTCATCGGAACTTTTTATATAATTTTATTTTGAGCTCATTGAGCTCTTTTTTCTGCGTCTCTCTCTTCTTCTAAATCTCACGAATTTCTTCCAATTCCTTGGCTACCCGAACTTCCAAATCATGATGGATCTTTTTGAGATTTTTGATGGACGGGCGGGTCAAAACAAAACAAAAAAATCTTTGGAAGAAAAAGAAGAACTTCCGGATTTTCACTTCTTTTCCATCCTCCCAATTTTTGCTCTTTCAGCCGATTTTTGATTTCCGTCGGAAACTTTTTTCCCCGTTTTTTTTTCCGTTTCGAACGGAAAATGACTCTCCCATTCATTGAAAAATTTTGCAAAGCGTGGGGTGTTGYCTGGGAAAATATGTGATTCATTCACAAAGTTGGCTTTTTTTTGTTTTTTTGAAGTCTCGGGCACACAAAGTACGAGTTTTCGGAACTTCCAAACATAAAAGTTTGTACCGAAATCACAAATTTTCCAAGATTCCTTGTTTGCTATAATAGAAGCCCTCCCTATTTGTGCACTCTGAGCTCAATTACCTCGGTTCCTTTAAGAGATATCAAAAATCTGCCAACTGATAAAATATTGCTGATTATATGATAAACATTTTTTCAATTGACTCATTTTTGATCTTTTACAGGAAACAGGATAAATTGGCTTAAACGGCATTTCTATCCCAGGTCTTACGGTGTGTACCAAACGATTGAGGTCATAGTTTTTTTCGAAATTTGCATTTTCGAGTAATCCGAGTCATTGACCACTCAAAACCAGTTTGATCACACTGAGTTTTTTCGTGTATTTTATGAATTTCGATTTTTTGACCGTAACACAAAATTCGGAAATTCAGTAGACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCACTTCTTTTCCATCCTC</pcr_primer_p1>
		<pcr_primer_p2>GATTTCGGTACAAACTTTTATGT</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>TTTCACTTCTTTTCCATCCTCCCAATTTTTGCTCTTTCAGCCGATTTTTGATTTCCGTCGGAAACTTTTTTCCCCGTTTTTTTTTCCGTTTCGAACGGAAAATGACTCTCCCATTCATTGAAAAATTTTGCAAAGCGTGGGGTGTTGTCTGGGAAAATATGTGATTCATTCACAAAGTTGGCTTTTTTTTGTTTTTTTGAAGTCTCGGGCACACAAAGTACGAGTTTTCGGAACTTCCAAACATAAAAGTTTGTACCGAAATC</canonical_amplicon>
		<polymorphic_amplicon>TTTCACTTCTTTTCCATCCTCCCAATTTTTGCTCTTTCAGCCGATTTTTGATTTCCGTCGGAAACTTTTTTCCCCGTTTTTTTTTCCGTTTCGAACGGAAAATGACTCTCCCATTCATTGAAAAATTTTGCAAAGCGTGGGGTGTTGYCTGGGAAAATATGTGATTCATTCACAAAGTTGGCTTTTTTTTGTTTTTTTGAAGTCTCGGGCACACAAAGTACGAGTTTTCGGAACTTCCAAACATAAAAGTTTGTACCGAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19838</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>421653</contig_pos>
        <strand></strand>
        <context>TTTTTTGTTT[T/C]TTTGAAGTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTGTCTGGGAAAATATGTGATTCATTCACAAAGTTGGCTTTTTTTTGTTT</left_flank>
        <right_flank>TTTGAAGTCTCGGGCACACAAAGTACGAGTTTTCGGAACTTCCAAACATA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTATATGAGGTCTTTAGTGGGGACAAAAAGGGAAAAGAGAGGAGCAGAGTATGTTTCAATTTCTCTCTTTTTTTTGGAATATTCATGTAGTTCTTTTCATCGGAACTTTTTATATAATTTTATTTTGAGCTCATTGAGCTCTTTTTTCTGCGTCTCTCTCTTCTTCTAAATCTCACGAATTTCTTCCAATTCCTTGGCTACCCGAACTTCCAAATCATGATGGATCTTTTTGAGATTTTTGATGGACGGGCGGGTCAAAACAAAACAAAAAAATCTTTGGAAGAAAAAGAAGAACTTCCGGATTTTCACTTCTTTTCCATCCTCCCAATTTTTGCTCTTTCAGCCGATTTTTGATTTCCGTCGGAAACTTTTTTCCCCGTTTTTTTTTCCGTTTCGAACGGAAAATGACTCTCCCATTCATTGAAAAATTTTGCAAAGCGTGGGGTGTTGTCTGGGAAAATATGTGATTCATTCACAAAGTTGGCTTTTTTTTGTTTTTTTGAAGTCTCGGGCACACAAAGTACGAGTTTTCGGAACTTCCAAACATAAAAGTTTGTACCGAAATCACAAATTTTCCAAGATTCCTTGTTTGCTATAATAGAAGCCCTCCCTATTTGTGCACTCTGAGCTCAATTACCTCGGTTCCTTTAAGAGATATCAAAAATCTGCCAACTGATAAAATATTGCTGATTATATGATAAACATTTTTTCAATTGACTCATTTTTGATCTTTTACAGGAAACAGGATAAATTGGCTTAAACGGCATTTCTATCCCAGGTCTTACGGTGTGTACCAAACGATTGAGGTCATAGTTTTTTTCGAAATTTGCATTTTCGAGTAATCCGAGTCATTGACCACTCAAAACCAGTTTGATCACACTGAGTTTTTTCGTGTATTTTATGAATTTCGATTTTTTGACCGTAACACAAAATTCGGAAATTCAGTAGACGAGAGTACAGTTAGCTGGACAATACAATTAAAAATTGCTTTTATGAGA</canonical>
            <polymorphic>AAGTATATGAGGTCTTTAGTGGGGACAAAAAGGGAAAAGAGAGGAGCAGAGTATGTTTCAATTTCTCTCTTTTTTTTGGAATATTCATGTAGTTCTTTTCATCGGAACTTTTTATATAATTTTATTTTGAGCTCATTGAGCTCTTTTTTCTGCGTCTCTCTCTTCTTCTAAATCTCACGAATTTCTTCCAATTCCTTGGCTACCCGAACTTCCAAATCATGATGGATCTTTTTGAGATTTTTGATGGACGGGCGGGTCAAAACAAAACAAAAAAATCTTTGGAAGAAAAAGAAGAACTTCCGGATTTTCACTTCTTTTCCATCCTCCCAATTTTTGCTCTTTCAGCCGATTTTTGATTTCCGTCGGAAACTTTTTTCCCCGTTTTTTTTTCCGTTTCGAACGGAAAATGACTCTCCCATTCATTGAAAAATTTTGCAAAGCGTGGGGTGTTGTCTGGGAAAATATGTGATTCATTCACAAAGTTGGCTTTTTTTTGTTTYTTTGAAGTCTCGGGCACACAAAGTACGAGTTTTCGGAACTTCCAAACATAAAAGTTTGTACCGAAATCACAAATTTTCCAAGATTCCTTGTTTGCTATAATAGAAGCCCTCCCTATTTGTGCACTCTGAGCTCAATTACCTCGGTTCCTTTAAGAGATATCAAAAATCTGCCAACTGATAAAATATTGCTGATTATATGATAAACATTTTTTCAATTGACTCATTTTTGATCTTTTACAGGAAACAGGATAAATTGGCTTAAACGGCATTTCTATCCCAGGTCTTACGGTGTGTACCAAACGATTGAGGTCATAGTTTTTTTCGAAATTTGCATTTTCGAGTAATCCGAGTCATTGACCACTCAAAACCAGTTTGATCACACTGAGTTTTTTCGTGTATTTTATGAATTTCGATTTTTTGACCGTAACACAAAATTCGGAAATTCAGTAGACGAGAGTACAGTTAGCTGGACAATACAATTAAAAATTGCTTTTATGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCACTTCTTTTCCATCCTC</pcr_primer_p1>
		<pcr_primer_p2>GATTTCGGTACAAACTTTTATGT</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>TTTCACTTCTTTTCCATCCTCCCAATTTTTGCTCTTTCAGCCGATTTTTGATTTCCGTCGGAAACTTTTTTCCCCGTTTTTTTTTCCGTTTCGAACGGAAAATGACTCTCCCATTCATTGAAAAATTTTGCAAAGCGTGGGGTGTTGTCTGGGAAAATATGTGATTCATTCACAAAGTTGGCTTTTTTTTGTTTTTTTGAAGTCTCGGGCACACAAAGTACGAGTTTTCGGAACTTCCAAACATAAAAGTTTGTACCGAAATC</canonical_amplicon>
		<polymorphic_amplicon>TTTCACTTCTTTTCCATCCTCCCAATTTTTGCTCTTTCAGCCGATTTTTGATTTCCGTCGGAAACTTTTTTCCCCGTTTTTTTTTCCGTTTCGAACGGAAAATGACTCTCCCATTCATTGAAAAATTTTGCAAAGCGTGGGGTGTTGTCTGGGAAAATATGTGATTCATTCACAAAGTTGGCTTTTTTTTGTTTYTTTGAAGTCTCGGGCACACAAAGTACGAGTTTTCGGAACTTCCAAACATAAAAGTTTGTACCGAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19839</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>421676</contig_pos>
        <strand></strand>
        <context>GGCACACAAA[G/A]TACGAGTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTCACAAAGTTGGCTTTTTTTTGTTTTTTTGAAGTCTCGGGCACACAAA</left_flank>
        <right_flank>TACGAGTTTTCGGAACTTCCAAACATAAAAGTTTGTACCGAAATCACAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACAAAAAGGGAAAAGAGAGGAGCAGAGTATGTTTCAATTTCTCTCTTTTTTTTGGAATATTCATGTAGTTCTTTTCATCGGAACTTTTTATATAATTTTATTTTGAGCTCATTGAGCTCTTTTTTCTGCGTCTCTCTCTTCTTCTAAATCTCACGAATTTCTTCCAATTCCTTGGCTACCCGAACTTCCAAATCATGATGGATCTTTTTGAGATTTTTGATGGACGGGCGGGTCAAAACAAAACAAAAAAATCTTTGGAAGAAAAAGAAGAACTTCCGGATTTTCACTTCTTTTCCATCCTCCCAATTTTTGCTCTTTCAGCCGATTTTTGATTTCCGTCGGAAACTTTTTTCCCCGTTTTTTTTTCCGTTTCGAACGGAAAATGACTCTCCCATTCATTGAAAAATTTTGCAAAGCGTGGGGTGTTGTCTGGGAAAATATGTGATTCATTCACAAAGTTGGCTTTTTTTTGTTTTTTTGAAGTCTCGGGCACACAAAGTACGAGTTTTCGGAACTTCCAAACATAAAAGTTTGTACCGAAATCACAAATTTTCCAAGATTCCTTGTTTGCTATAATAGAAGCCCTCCCTATTTGTGCACTCTGAGCTCAATTACCTCGGTTCCTTTAAGAGATATCAAAAATCTGCCAACTGATAAAATATTGCTGATTATATGATAAACATTTTTTCAATTGACTCATTTTTGATCTTTTACAGGAAACAGGATAAATTGGCTTAAACGGCATTTCTATCCCAGGTCTTACGGTGTGTACCAAACGATTGAGGTCATAGTTTTTTTCGAAATTTGCATTTTCGAGTAATCCGAGTCATTGACCACTCAAAACCAGTTTGATCACACTGAGTTTTTTCGTGTATTTTATGAATTTCGATTTTTTGACCGTAACACAAAATTCGGAAATTCAGTAGACGAGAGTACAGTTAGCTGGACAATACAATTAAAAATTGCTTTTATGAGAACTTGAAAAACTTTCATTCAAAT</canonical>
            <polymorphic>GACAAAAAGGGAAAAGAGAGGAGCAGAGTATGTTTCAATTTCTCTCTTTTTTTTGGAATATTCATGTAGTTCTTTTCATCGGAACTTTTTATATAATTTTATTTTGAGCTCATTGAGCTCTTTTTTCTGCGTCTCTCTCTTCTTCTAAATCTCACGAATTTCTTCCAATTCCTTGGCTACCCGAACTTCCAAATCATGATGGATCTTTTTGAGATTTTTGATGGACGGGCGGGTCAAAACAAAACAAAAAAATCTTTGGAAGAAAAAGAAGAACTTCCGGATTTTCACTTCTTTTCCATCCTCCCAATTTTTGCTCTTTCAGCCGATTTTTGATTTCCGTCGGAAACTTTTTTCCCCGTTTTTTTTTCCGTTTCGAACGGAAAATGACTCTCCCATTCATTGAAAAATTTTGCAAAGCGTGGGGTGTTGTCTGGGAAAATATGTGATTCATTCACAAAGTTGGCTTTTTTTTGTTTTTTTGAAGTCTCGGGCACACAAARTACGAGTTTTCGGAACTTCCAAACATAAAAGTTTGTACCGAAATCACAAATTTTCCAAGATTCCTTGTTTGCTATAATAGAAGCCCTCCCTATTTGTGCACTCTGAGCTCAATTACCTCGGTTCCTTTAAGAGATATCAAAAATCTGCCAACTGATAAAATATTGCTGATTATATGATAAACATTTTTTCAATTGACTCATTTTTGATCTTTTACAGGAAACAGGATAAATTGGCTTAAACGGCATTTCTATCCCAGGTCTTACGGTGTGTACCAAACGATTGAGGTCATAGTTTTTTTCGAAATTTGCATTTTCGAGTAATCCGAGTCATTGACCACTCAAAACCAGTTTGATCACACTGAGTTTTTTCGTGTATTTTATGAATTTCGATTTTTTGACCGTAACACAAAATTCGGAAATTCAGTAGACGAGAGTACAGTTAGCTGGACAATACAATTAAAAATTGCTTTTATGAGAACTTGAAAAACTTTCATTCAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 235 164 65 35</canonical_bands>
                <polymorphic_bands>536 235 164 65</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCACTTCTTTTCCATCCTC</pcr_primer_p1>
		<pcr_primer_p2>AATTTGTGATTTCGGTACAAA</pcr_primer_p2>
		<pcr_amplicon_size>270</pcr_amplicon_size>
		<canonical_amplicon>TTTCACTTCTTTTCCATCCTCCCAATTTTTGCTCTTTCAGCCGATTTTTGATTTCCGTCGGAAACTTTTTTCCCCGTTTTTTTTTCCGTTTCGAACGGAAAATGACTCTCCCATTCATTGAAAAATTTTGCAAAGCGTGGGGTGTTGTCTGGGAAAATATGTGATTCATTCACAAAGTTGGCTTTTTTTTGTTTTTTTGAAGTCTCGGGCACACAAAGTACGAGTTTTCGGAACTTCCAAACATAAAAGTTTGTACCGAAATCACAAATT</canonical_amplicon>
		<polymorphic_amplicon>TTTCACTTCTTTTCCATCCTCCCAATTTTTGCTCTTTCAGCCGATTTTTGATTTCCGTCGGAAACTTTTTTCCCCGTTTTTTTTTCCGTTTCGAACGGAAAATGACTCTCCCATTCATTGAAAAATTTTGCAAAGCGTGGGGTGTTGTCTGGGAAAATATGTGATTCATTCACAAAGTTGGCTTTTTTTTGTTTTTTTGAAGTCTCGGGCACACAAARTACGAGTTTTCGGAACTTCCAAACATAAAAGTTTGTACCGAAATCACAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19840</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>422003</contig_pos>
        <strand></strand>
        <context>AGTAATCCGA[G/A]TCATTGACCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACGATTGAGGTCATAGTTTTTTTCGAAATTTGCATTTTCGAGTAATCCGA</left_flank>
        <right_flank>TCATTGACCACTCAAAACCAGTTTGATCACACTGAGTTTTTTCGTGTATT</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGATTTCCGTCGGAAACTTTTTTCCCCGTTTTTTTTTCCGTTTCGAACGGAAAATGACTCTCCCATTCATTGAAAAATTTTGCAAAGCGTGGGGTGTTGTCTGGGAAAATATGTGATTCATTCACAAAGTTGGCTTTTTTTTGTTTTTTTGAAGTCTCGGGCACACAAAGTACGAGTTTTCGGAACTTCCAAACATAAAAGTTTGTACCGAAATCACAAATTTTCCAAGATTCCTTGTTTGCTATAATAGAAGCCCTCCCTATTTGTGCACTCTGAGCTCAATTACCTCGGTTCCTTTAAGAGATATCAAAAATCTGCCAACTGATAAAATATTGCTGATTATATGATAAACATTTTTTCAATTGACTCATTTTTGATCTTTTACAGGAAACAGGATAAATTGGCTTAAACGGCATTTCTATCCCAGGTCTTACGGTGTGTACCAAACGATTGAGGTCATAGTTTTTTTCGAAATTTGCATTTTCGAGTAATCCGAGTCATTGACCACTCAAAACCAGTTTGATCACACTGAGTTTTTTCGTGTATTTTATGAATTTCGATTTTTTGACCGTAACACAAAATTCGGAAATTCAGTAGACGAGAGTACAGTTAGCTGGACAATACAATTAAAAATTGCTTTTATGAGAACTTGAAAAACTTTCATTCAAATTGAATTATTGTCTGTGTTATTTAGGAAATGGTAGTATAAAGACTGTAATAGAAGGGTAACCATACTTTGACCCACATTATAGCAACACAGTGCCACCCAGAGCGTAAACTTTGAGCTGATATATCTCAATTCCTGAAAGAGATAACAAAACGTAGTAAACTGATAAACTGTTTATCATAATATCAAAAATATTTTGTTAGTTTACTATTTTTTTGATATCTTGTCTAGGAACCGAGATATATCGGGTCAAAGTTGAAAGTGTCGAATTTCAGACTAGTCTGGCGAATGGAATATATTTCTCAAGACCTTTAAAATTGGTTATTTTTC</canonical>
            <polymorphic>TTTTGATTTCCGTCGGAAACTTTTTTCCCCGTTTTTTTTTCCGTTTCGAACGGAAAATGACTCTCCCATTCATTGAAAAATTTTGCAAAGCGTGGGGTGTTGTCTGGGAAAATATGTGATTCATTCACAAAGTTGGCTTTTTTTTGTTTTTTTGAAGTCTCGGGCACACAAAGTACGAGTTTTCGGAACTTCCAAACATAAAAGTTTGTACCGAAATCACAAATTTTCCAAGATTCCTTGTTTGCTATAATAGAAGCCCTCCCTATTTGTGCACTCTGAGCTCAATTACCTCGGTTCCTTTAAGAGATATCAAAAATCTGCCAACTGATAAAATATTGCTGATTATATGATAAACATTTTTTCAATTGACTCATTTTTGATCTTTTACAGGAAACAGGATAAATTGGCTTAAACGGCATTTCTATCCCAGGTCTTACGGTGTGTACCAAACGATTGAGGTCATAGTTTTTTTCGAAATTTGCATTTTCGAGTAATCCGARTCATTGACCACTCAAAACCAGTTTGATCACACTGAGTTTTTTCGTGTATTTTATGAATTTCGATTTTTTGACCGTAACACAAAATTCGGAAATTCAGTAGACGAGAGTACAGTTAGCTGGACAATACAATTAAAAATTGCTTTTATGAGAACTTGAAAAACTTTCATTCAAATTGAATTATTGTCTGTGTTATTTAGGAAATGGTAGTATAAAGACTGTAATAGAAGGGTAACCATACTTTGACCCACATTATAGCAACACAGTGCCACCCAGAGCGTAAACTTTGAGCTGATATATCTCAATTCCTGAAAGAGATAACAAAACGTAGTAAACTGATAAACTGTTTATCATAATATCAAAAATATTTTGTTAGTTTACTATTTTTTTGATATCTTGTCTAGGAACCGAGATATATCGGGTCAAAGTTGAAAGTGTCGAATTTCAGACTAGTCTGGCGAATGGAATATATTTCTCAAGACCTTTAAAATTGGTTATTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACGATTGAGGTCATAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CCTAAATAACACAGACAATAATTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACGATTGAGGTCATAGTTTTTTTCGAAATTTGCATTTTCGAGTAATCCGAGTCATTGACCACTCAAAACCAGTTTGATCACACTGAGTTTTTTCGTGTATTTTATGAATTTCGATTTTTTGACCGTAACACAAAATTCGGAAATTCAGTAGACGAGAGTACAGTTAGCTGGACAATACAATTAAAAATTGCTTTTATGAGAACTTGAAAAACTTTCATTCAAATTGAATTATTGTCTGTGTTATTTAGG</canonical_amplicon>
		<polymorphic_amplicon>AACGATTGAGGTCATAGTTTTTTTCGAAATTTGCATTTTCGAGTAATCCGARTCATTGACCACTCAAAACCAGTTTGATCACACTGAGTTTTTTCGTGTATTTTATGAATTTCGATTTTTTGACCGTAACACAAAATTCGGAAATTCAGTAGACGAGAGTACAGTTAGCTGGACAATACAATTAAAAATTGCTTTTATGAGAACTTGAAAAACTTTCATTCAAATTGAATTATTGTCTGTGTTATTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19841</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>422050</contig_pos>
        <strand></strand>
        <context>TTTTTTCGTG[T/C]ATTTTATGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CGAGTCATTGACCACTCAAAACCAGTTTGATCACACTGAGTTTTTTCGTG</left_flank>
        <right_flank>ATTTTATGAATTTCGATTTTTTGACCGTAACACAAAATTCGGAAATTCAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACGGAAAATGACTCTCCCATTCATTGAAAAATTTTGCAAAGCGTGGGGTGTTGTCTGGGAAAATATGTGATTCATTCACAAAGTTGGCTTTTTTTTGTTTTTTTGAAGTCTCGGGCACACAAAGTACGAGTTTTCGGAACTTCCAAACATAAAAGTTTGTACCGAAATCACAAATTTTCCAAGATTCCTTGTTTGCTATAATAGAAGCCCTCCCTATTTGTGCACTCTGAGCTCAATTACCTCGGTTCCTTTAAGAGATATCAAAAATCTGCCAACTGATAAAATATTGCTGATTATATGATAAACATTTTTTCAATTGACTCATTTTTGATCTTTTACAGGAAACAGGATAAATTGGCTTAAACGGCATTTCTATCCCAGGTCTTACGGTGTGTACCAAACGATTGAGGTCATAGTTTTTTTCGAAATTTGCATTTTCGAGTAATCCGAGTCATTGACCACTCAAAACCAGTTTGATCACACTGAGTTTTTTCGTGTATTTTATGAATTTCGATTTTTTGACCGTAACACAAAATTCGGAAATTCAGTAGACGAGAGTACAGTTAGCTGGACAATACAATTAAAAATTGCTTTTATGAGAACTTGAAAAACTTTCATTCAAATTGAATTATTGTCTGTGTTATTTAGGAAATGGTAGTATAAAGACTGTAATAGAAGGGTAACCATACTTTGACCCACATTATAGCAACACAGTGCCACCCAGAGCGTAAACTTTGAGCTGATATATCTCAATTCCTGAAAGAGATAACAAAACGTAGTAAACTGATAAACTGTTTATCATAATATCAAAAATATTTTGTTAGTTTACTATTTTTTTGATATCTTGTCTAGGAACCGAGATATATCGGGTCAAAGTTGAAAGTGTCGAATTTCAGACTAGTCTGGCGAATGGAATATATTTCTCAAGACCTTTAAAATTGGTTATTTTTCAATGAAACGCTAAATGAGTACATATTTTTGTTCTATTGTAAAGAATG</canonical>
            <polymorphic>GAACGGAAAATGACTCTCCCATTCATTGAAAAATTTTGCAAAGCGTGGGGTGTTGTCTGGGAAAATATGTGATTCATTCACAAAGTTGGCTTTTTTTTGTTTTTTTGAAGTCTCGGGCACACAAAGTACGAGTTTTCGGAACTTCCAAACATAAAAGTTTGTACCGAAATCACAAATTTTCCAAGATTCCTTGTTTGCTATAATAGAAGCCCTCCCTATTTGTGCACTCTGAGCTCAATTACCTCGGTTCCTTTAAGAGATATCAAAAATCTGCCAACTGATAAAATATTGCTGATTATATGATAAACATTTTTTCAATTGACTCATTTTTGATCTTTTACAGGAAACAGGATAAATTGGCTTAAACGGCATTTCTATCCCAGGTCTTACGGTGTGTACCAAACGATTGAGGTCATAGTTTTTTTCGAAATTTGCATTTTCGAGTAATCCGAGTCATTGACCACTCAAAACCAGTTTGATCACACTGAGTTTTTTCGTGYATTTTATGAATTTCGATTTTTTGACCGTAACACAAAATTCGGAAATTCAGTAGACGAGAGTACAGTTAGCTGGACAATACAATTAAAAATTGCTTTTATGAGAACTTGAAAAACTTTCATTCAAATTGAATTATTGTCTGTGTTATTTAGGAAATGGTAGTATAAAGACTGTAATAGAAGGGTAACCATACTTTGACCCACATTATAGCAACACAGTGCCACCCAGAGCGTAAACTTTGAGCTGATATATCTCAATTCCTGAAAGAGATAACAAAACGTAGTAAACTGATAAACTGTTTATCATAATATCAAAAATATTTTGTTAGTTTACTATTTTTTTGATATCTTGTCTAGGAACCGAGATATATCGGGTCAAAGTTGAAAGTGTCGAATTTCAGACTAGTCTGGCGAATGGAATATATTTCTCAAGACCTTTAAAATTGGTTATTTTTCAATGAAACGCTAAATGAGTACATATTTTTGTTCTATTGTAAAGAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACGATTGAGGTCATAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CCTAAATAACACAGACAATAATTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACGATTGAGGTCATAGTTTTTTTCGAAATTTGCATTTTCGAGTAATCCGAGTCATTGACCACTCAAAACCAGTTTGATCACACTGAGTTTTTTCGTGTATTTTATGAATTTCGATTTTTTGACCGTAACACAAAATTCGGAAATTCAGTAGACGAGAGTACAGTTAGCTGGACAATACAATTAAAAATTGCTTTTATGAGAACTTGAAAAACTTTCATTCAAATTGAATTATTGTCTGTGTTATTTAGG</canonical_amplicon>
		<polymorphic_amplicon>AACGATTGAGGTCATAGTTTTTTTCGAAATTTGCATTTTCGAGTAATCCGAGTCATTGACCACTCAAAACCAGTTTGATCACACTGAGTTTTTTCGTGYATTTTATGAATTTCGATTTTTTGACCGTAACACAAAATTCGGAAATTCAGTAGACGAGAGTACAGTTAGCTGGACAATACAATTAAAAATTGCTTTTATGAGAACTTGAAAAACTTTCATTCAAATTGAATTATTGTCTGTGTTATTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19842</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>422077</contig_pos>
        <strand></strand>
        <context>TTTTTTGACC[G/A]TAACACAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGATCACACTGAGTTTTTTCGTGTATTTTATGAATTTCGATTTTTTGACC</left_flank>
        <right_flank>TAACACAAAATTCGGAAATTCAGTAGACGAGAGTACAGTTAGCTGGACAA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAATTTTGCAAAGCGTGGGGTGTTGTCTGGGAAAATATGTGATTCATTCACAAAGTTGGCTTTTTTTTGTTTTTTTGAAGTCTCGGGCACACAAAGTACGAGTTTTCGGAACTTCCAAACATAAAAGTTTGTACCGAAATCACAAATTTTCCAAGATTCCTTGTTTGCTATAATAGAAGCCCTCCCTATTTGTGCACTCTGAGCTCAATTACCTCGGTTCCTTTAAGAGATATCAAAAATCTGCCAACTGATAAAATATTGCTGATTATATGATAAACATTTTTTCAATTGACTCATTTTTGATCTTTTACAGGAAACAGGATAAATTGGCTTAAACGGCATTTCTATCCCAGGTCTTACGGTGTGTACCAAACGATTGAGGTCATAGTTTTTTTCGAAATTTGCATTTTCGAGTAATCCGAGTCATTGACCACTCAAAACCAGTTTGATCACACTGAGTTTTTTCGTGTATTTTATGAATTTCGATTTTTTGACCGTAACACAAAATTCGGAAATTCAGTAGACGAGAGTACAGTTAGCTGGACAATACAATTAAAAATTGCTTTTATGAGAACTTGAAAAACTTTCATTCAAATTGAATTATTGTCTGTGTTATTTAGGAAATGGTAGTATAAAGACTGTAATAGAAGGGTAACCATACTTTGACCCACATTATAGCAACACAGTGCCACCCAGAGCGTAAACTTTGAGCTGATATATCTCAATTCCTGAAAGAGATAACAAAACGTAGTAAACTGATAAACTGTTTATCATAATATCAAAAATATTTTGTTAGTTTACTATTTTTTTGATATCTTGTCTAGGAACCGAGATATATCGGGTCAAAGTTGAAAGTGTCGAATTTCAGACTAGTCTGGCGAATGGAATATATTTCTCAAGACCTTTAAAATTGGTTATTTTTCAATGAAACGCTAAATGAGTACATATTTTTGTTCTATTGTAAAGAATGTAAAGGTTAATCTAAAATCTGACTAAA</canonical>
            <polymorphic>GAAAAATTTTGCAAAGCGTGGGGTGTTGTCTGGGAAAATATGTGATTCATTCACAAAGTTGGCTTTTTTTTGTTTTTTTGAAGTCTCGGGCACACAAAGTACGAGTTTTCGGAACTTCCAAACATAAAAGTTTGTACCGAAATCACAAATTTTCCAAGATTCCTTGTTTGCTATAATAGAAGCCCTCCCTATTTGTGCACTCTGAGCTCAATTACCTCGGTTCCTTTAAGAGATATCAAAAATCTGCCAACTGATAAAATATTGCTGATTATATGATAAACATTTTTTCAATTGACTCATTTTTGATCTTTTACAGGAAACAGGATAAATTGGCTTAAACGGCATTTCTATCCCAGGTCTTACGGTGTGTACCAAACGATTGAGGTCATAGTTTTTTTCGAAATTTGCATTTTCGAGTAATCCGAGTCATTGACCACTCAAAACCAGTTTGATCACACTGAGTTTTTTCGTGTATTTTATGAATTTCGATTTTTTGACCRTAACACAAAATTCGGAAATTCAGTAGACGAGAGTACAGTTAGCTGGACAATACAATTAAAAATTGCTTTTATGAGAACTTGAAAAACTTTCATTCAAATTGAATTATTGTCTGTGTTATTTAGGAAATGGTAGTATAAAGACTGTAATAGAAGGGTAACCATACTTTGACCCACATTATAGCAACACAGTGCCACCCAGAGCGTAAACTTTGAGCTGATATATCTCAATTCCTGAAAGAGATAACAAAACGTAGTAAACTGATAAACTGTTTATCATAATATCAAAAATATTTTGTTAGTTTACTATTTTTTTGATATCTTGTCTAGGAACCGAGATATATCGGGTCAAAGTTGAAAGTGTCGAATTTCAGACTAGTCTGGCGAATGGAATATATTTCTCAAGACCTTTAAAATTGGTTATTTTTCAATGAAACGCTAAATGAGTACATATTTTTGTTCTATTGTAAAGAATGTAAAGGTTAATCTAAAATCTGACTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>364 232 135 106 80 45 38</canonical_bands>
                <polymorphic_bands>364 232 173 106 80 45</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>499 346 155</canonical_bands>
                <polymorphic_bands>654 346</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACGATTGAGGTCATAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CCTAAATAACACAGACAATAATTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACGATTGAGGTCATAGTTTTTTTCGAAATTTGCATTTTCGAGTAATCCGAGTCATTGACCACTCAAAACCAGTTTGATCACACTGAGTTTTTTCGTGTATTTTATGAATTTCGATTTTTTGACCGTAACACAAAATTCGGAAATTCAGTAGACGAGAGTACAGTTAGCTGGACAATACAATTAAAAATTGCTTTTATGAGAACTTGAAAAACTTTCATTCAAATTGAATTATTGTCTGTGTTATTTAGG</canonical_amplicon>
		<polymorphic_amplicon>AACGATTGAGGTCATAGTTTTTTTCGAAATTTGCATTTTCGAGTAATCCGAGTCATTGACCACTCAAAACCAGTTTGATCACACTGAGTTTTTTCGTGTATTTTATGAATTTCGATTTTTTGACCRTAACACAAAATTCGGAAATTCAGTAGACGAGAGTACAGTTAGCTGGACAATACAATTAAAAATTGCTTTTATGAGAACTTGAAAAACTTTCATTCAAATTGAATTATTGTCTGTGTTATTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19843</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>427214</contig_pos>
        <strand>+</strand>
        <context>ACAAGAAAGC[C/T]CAAATGTGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCACAGATCCCAAAGATGGATTTTTTGTGATTTTTTCAACAAGAAAGC</left_flank>
        <right_flank>CAAATGTGGTTTTGGCTGAAAATTGCTGAAAAATTGAAAATTCTGGTCGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGAATCTCATGCATTTTATGATATTCAAGCGTAGTGGGGCACCCACAGCTGATGCATTTCTCCCATTTTTTTTCGAATAAAATCTTTCAATAATTCTTTGTTTGTAGAATAGGTTTTTTGTCGAGTTCAAGAAAATCATTTCGAATTCTTATCTAGGTTAGAGAATCTTTGAATTCAATTTCCCAAAAAAGAGCATTTAGCGACGAATAGCACGACATGCAGATAAATCGAACTAAAGCAAATTTCCTTTTTTATGTTGTAGTTTGATTATGAAGCTTTGAATTTTGCTGGGTTTAAAAAATACAGTAAAAATTGTAGCTTTAAAAATTGTGGAAATTCTGAAAATCTGAAAAAAAAACTCATTTTTACACCACTTGCGAATCGTTTTGATTATTTGCAAAGTTCCAGTTCAGAGTTTAGAGTTTAAAAAATCCAGATTCTTTAAAGTAATCACAGATCCCAAAGATGGATTTTTTGTGATTTTTTCAACAAGAAAGCTCAAATGTGGTTTTGGCTGAAAATTGCTGAAAAATTGAAAATTCTGGTCGGGAAAAATCGAAAAACCGATTTTGATTACTGTAGATTCGTTTTTTGTGCAATGCACTATTTTTGAAGACAATTCGCACAGAATTTCAGAGGCTTATTCATTTTCGAACCCAATTATTTTCGTGAATAATTTTCCCTATTATTCTTCCTAATCTGCACCCTCTACGTTGATTTTTTTTTGACATGTTTTTGACATTTATCTTAAAAACGAGCGATTTTGAGTCTATCCTCCAAGAGAGTTTTTTTTCCGACCCAAAATTCTGGATCGATTGATATAAAAATCTCAAAAATTTTGGAATTAGTGGACGCCCCCCTTTAAAAATTGAAAGCCTATTTTCGGAAATTTTGCAGAGAATTCCTGTGAAAAAAATTTCTGAAATCGGCTCAGAATTTAGTACTTTCATAGATTCCAGTAATATTTTTGAGTCATTTCCAAACCTAATCACTTTGTTT</canonical>
            <polymorphic>TAGAATCTCATGCATTTTATGATATTCAAGCGTAGTGGGGCACCCACAGCTGATGCATTTCTCCCATTTTTTTTCGAATAAAATCTTTCAATAATTCTTTGTTTGTAGAATAGGTTTTTTGTCGAGTTCAAGAAAATCATTTCGAATTCTTATCTAGGTTAGAGAATCTTTGAATTCAATTTCCCAAAAAAGAGCATTTAGCGACGAATAGCACGACATGCAGATAAATCGAACTAAAGCAAATTTCCTTTTTTATGTTGTAGTTTGATTATGAAGCTTTGAATTTTGCTGGGTTTAAAAAATACAGTAAAAATTGTAGCTTTAAAAATTGTGGAAATTCTGAAAATCTGAAAAAAAAACTCATTTTTACACCACTTGCGAATCGTTTTGATTATTTGCAAAGTTCCAGTTCAGAGTTTAGAGTTTAAAAAATCCAGATTCTTTAAAGTAATCACAGATCCCAAAGATGGATTTTTTGTGATTTTTTCAACAAGAAAGCYCAAATGTGGTTTTGGCTGAAAATTGCTGAAAAATTGAAAATTCTGGTCGGGAAAAATCGAAAAACCGATTTTGATTACTGTAGATTCGTTTTTTGTGCAATGCACTATTTTTGAAGACAATTCGCACAGAATTTCAGAGGCTTATTCATTTTCGAACCCAATTATTTTCGTGAATAATTTTCCCTATTATTCTTCCTAATCTGCACCCTCTACGTTGATTTTTTTTTGACATGTTTTTGACATTTATCTTAAAAACGAGCGATTTTGAGTCTATCCTCCAAGAGAGTTTTTTTTCCGACCCAAAATTCTGGATCGATTGATATAAAAATCTCAAAAATTTTGGAATTAGTGGACGCCCCCCTTTAAAAATTGAAAGCCTATTTTCGGAAATTTTGCAGAGAATTCCTGTGAAAAAAATTTCTGAAATCGGCTCAGAATTTAGTACTTTCATAGATTCCAGTAATATTTTTGAGTCATTTCCAAACCTAATCACTTTGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>502 227 179 49 43</canonical_bands>
                <polymorphic_bands>681 227 49 43</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>236 227 179 125 70 54 49 43 17</canonical_bands>
                <polymorphic_bands>236 227 196 125 70 54 49 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTCCAGTTCAGAGTTTAGAGTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAATGAATAAGCCTCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGTTCCAGTTCAGAGTTTAGAGTTTAAAAAATCCAGATTCTTTAAAGTAATCACAGATCCCAAAGATGGATTTTTTGTGATTTTTTCAACAAGAAAGCTCAAATGTGGTTTTGGCTGAAAATTGCTGAAAAATTGAAAATTCTGGTCGGGAAAAATCGAAAAACCGATTTTGATTACTGTAGATTCGTTTTTTGTGCAATGCACTATTTTTGAAGACAATTCGCACAGAATTTCAGAGGCTTATTCATTTTC</canonical_amplicon>
		<polymorphic_amplicon>AGTTCCAGTTCAGAGTTTAGAGTTTAAAAAATCCAGATTCTTTAAAGTAATCACAGATCCCAAAGATGGATTTTTTGTGATTTTTTCAACAAGAAAGCYCAAATGTGGTTTTGGCTGAAAATTGCTGAAAAATTGAAAATTCTGGTCGGGAAAAATCGAAAAACCGATTTTGATTACTGTAGATTCGTTTTTTGTGCAATGCACTATTTTTGAAGACAATTCGCACAGAATTTCAGAGGCTTATTCATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19844</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>427181</contig_pos>
        <strand>+</strand>
        <context>GATCCCAAAG[A/T]TGGATTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTAGAGTTTAAAAAATCCAGATTCTTTAAAGTAATCACAGATCCCAAAG</left_flank>
        <right_flank>TGGATTTTTTGTGATTTTTTCAACAAGAAAGCTCAAATGTGGTTTTGGCT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGTTTTCATGTGTCAAAAAAGAAAGGGTGTATAGAATCTCATGCATTTTATGATATTCAAGCGTAGTGGGGCACCCACAGCTGATGCATTTCTCCCATTTTTTTTCGAATAAAATCTTTCAATAATTCTTTGTTTGTAGAATAGGTTTTTTGTCGAGTTCAAGAAAATCATTTCGAATTCTTATCTAGGTTAGAGAATCTTTGAATTCAATTTCCCAAAAAAGAGCATTTAGCGACGAATAGCACGACATGCAGATAAATCGAACTAAAGCAAATTTCCTTTTTTATGTTGTAGTTTGATTATGAAGCTTTGAATTTTGCTGGGTTTAAAAAATACAGTAAAAATTGTAGCTTTAAAAATTGTGGAAATTCTGAAAATCTGAAAAAAAAACTCATTTTTACACCACTTGCGAATCGTTTTGATTATTTGCAAAGTTCCAGTTCAGAGTTTAGAGTTTAAAAAATCCAGATTCTTTAAAGTAATCACAGATCCCAAAGATGGATTTTTTGTGATTTTTTCAACAAGAAAGCTCAAATGTGGTTTTGGCTGAAAATTGCTGAAAAATTGAAAATTCTGGTCGGGAAAAATCGAAAAACCGATTTTGATTACTGTAGATTCGTTTTTTGTGCAATGCACTATTTTTGAAGACAATTCGCACAGAATTTCAGAGGCTTATTCATTTTCGAACCCAATTATTTTCGTGAATAATTTTCCCTATTATTCTTCCTAATCTGCACCCTCTACGTTGATTTTTTTTTGACATGTTTTTGACATTTATCTTAAAAACGAGCGATTTTGAGTCTATCCTCCAAGAGAGTTTTTTTTCCGACCCAAAATTCTGGATCGATTGATATAAAAATCTCAAAAATTTTGGAATTAGTGGACGCCCCCCTTTAAAAATTGAAAGCCTATTTTCGGAAATTTTGCAGAGAATTCCTGTGAAAAAAATTTCTGAAATCGGCTCAGAATTTAGTACTTTCATAGATTCCAGTAATATT</canonical>
            <polymorphic>GTGGTTTTCATGTGTCAAAAAAGAAAGGGTGTATAGAATCTCATGCATTTTATGATATTCAAGCGTAGTGGGGCACCCACAGCTGATGCATTTCTCCCATTTTTTTTCGAATAAAATCTTTCAATAATTCTTTGTTTGTAGAATAGGTTTTTTGTCGAGTTCAAGAAAATCATTTCGAATTCTTATCTAGGTTAGAGAATCTTTGAATTCAATTTCCCAAAAAAGAGCATTTAGCGACGAATAGCACGACATGCAGATAAATCGAACTAAAGCAAATTTCCTTTTTTATGTTGTAGTTTGATTATGAAGCTTTGAATTTTGCTGGGTTTAAAAAATACAGTAAAAATTGTAGCTTTAAAAATTGTGGAAATTCTGAAAATCTGAAAAAAAAACTCATTTTTACACCACTTGCGAATCGTTTTGATTATTTGCAAAGTTCCAGTTCAGAGTTTAGAGTTTAAAAAATCCAGATTCTTTAAAGTAATCACAGATCCCAAAGWTGGATTTTTTGTGATTTTTTCAACAAGAAAGCTCAAATGTGGTTTTGGCTGAAAATTGCTGAAAAATTGAAAATTCTGGTCGGGAAAAATCGAAAAACCGATTTTGATTACTGTAGATTCGTTTTTTGTGCAATGCACTATTTTTGAAGACAATTCGCACAGAATTTCAGAGGCTTATTCATTTTCGAACCCAATTATTTTCGTGAATAATTTTCCCTATTATTCTTCCTAATCTGCACCCTCTACGTTGATTTTTTTTTGACATGTTTTTGACATTTATCTTAAAAACGAGCGATTTTGAGTCTATCCTCCAAGAGAGTTTTTTTTCCGACCCAAAATTCTGGATCGATTGATATAAAAATCTCAAAAATTTTGGAATTAGTGGACGCCCCCCTTTAAAAATTGAAAGCCTATTTTCGGAAATTTTGCAGAGAATTCCTGTGAAAAAAATTTCTGAAATCGGCTCAGAATTTAGTACTTTCATAGATTCCAGTAATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTCCAGTTCAGAGTTTAGAGTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAATGAATAAGCCTCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGTTCCAGTTCAGAGTTTAGAGTTTAAAAAATCCAGATTCTTTAAAGTAATCACAGATCCCAAAGATGGATTTTTTGTGATTTTTTCAACAAGAAAGCTCAAATGTGGTTTTGGCTGAAAATTGCTGAAAAATTGAAAATTCTGGTCGGGAAAAATCGAAAAACCGATTTTGATTACTGTAGATTCGTTTTTTGTGCAATGCACTATTTTTGAAGACAATTCGCACAGAATTTCAGAGGCTTATTCATTTTC</canonical_amplicon>
		<polymorphic_amplicon>AGTTCCAGTTCAGAGTTTAGAGTTTAAAAAATCCAGATTCTTTAAAGTAATCACAGATCCCAAAGWTGGATTTTTTGTGATTTTTTCAACAAGAAAGCTCAAATGTGGTTTTGGCTGAAAATTGCTGAAAAATTGAAAATTCTGGTCGGGAAAAATCGAAAAACCGATTTTGATTACTGTAGATTCGTTTTTTGTGCAATGCACTATTTTTGAAGACAATTCGCACAGAATTTCAGAGGCTTATTCATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19845</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>426968</contig_pos>
        <strand>+</strand>
        <context>TTTCCTTTTT[C/T]ATGTTGTAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGAATAGCACGACATGCAGATAAATCGAACTAAAGCAAATTTCCTTTTT</left_flank>
        <right_flank>ATGTTGTAGTTTGATTATGAAGCTTTGAATTTTGCTGGGTTTAAAAAATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACATGACGGACACATGGGAGAAGATACTCACACATTAGCTCATTTTCAGAATTTCTGGTGACTCTAGTTTTTTTGGAAGAACGTGTTTTTTTTCGGAAAACACGAGTTGGTCATTATGAGCCAGAATGCTGATGTCTAGTAGATGTGTTTTTGTCATTTCATCACACAGCTGCAGGATTCTCTTCTTCTTTACTTTTCAATCCCATTTCTTTGTGGTTTTCATGTGTCAAAAAAGAAAGGGTGTATAGAATCTCATGCATTTTATGATATTCAAGCGTAGTGGGGCACCCACAGCTGATGCATTTCTCCCATTTTTTTTCGAATAAAATCTTTCAATAATTCTTTGTTTGTAGAATAGGTTTTTTGTCGAGTTCAAGAAAATCATTTCGAATTCTTATCTAGGTTAGAGAATCTTTGAATTCAATTTCCCAAAAAAGAGCATTTAGCGACGAATAGCACGACATGCAGATAAATCGAACTAAAGCAAATTTCCTTTTTTATGTTGTAGTTTGATTATGAAGCTTTGAATTTTGCTGGGTTTAAAAAATACAGTAAAAATTGTAGCTTTAAAAATTGTGGAAATTCTGAAAATCTGAAAAAAAAACTCATTTTTACACCACTTGCGAATCGTTTTGATTATTTGCAAAGTTCCAGTTCAGAGTTTAGAGTTTAAAAAATCCAGATTCTTTAAAGTAATCACAGATCCCAAAGATGGATTTTTTGTGATTTTTTCAACAAGAAAGCTCAAATGTGGTTTTGGCTGAAAATTGCTGAAAAATTGAAAATTCTGGTCGGGAAAAATCGAAAAACCGATTTTGATTACTGTAGATTCGTTTTTTGTGCAATGCACTATTTTTGAAGACAATTCGCACAGAATTTCAGAGGCTTATTCATTTTCGAACCCAATTATTTTCGTGAATAATTTTCCCTATTATTCTTCCTAATCTGCACCCTCTACGTTGATTTTTTTTTGACATGTTTTTGACATTTATCTTAAAA</canonical>
            <polymorphic>CACATGACGGACACATGGGAGAAGATACTCACACATTAGCTCATTTTCAGAATTTCTGGTGACTCTAGTTTTTTTGGAAGAACGTGTTTTTTTTCGGAAAACACGAGTTGGTCATTATGAGCCAGAATGCTGATGTCTAGTAGATGTGTTTTTGTCATTTCATCACACAGCTGCAGGATTCTCTTCTTCTTTACTTTTCAATCCCATTTCTTTGTGGTTTTCATGTGTCAAAAAAGAAAGGGTGTATAGAATCTCATGCATTTTATGATATTCAAGCGTAGTGGGGCACCCACAGCTGATGCATTTCTCCCATTTTTTTTCGAATAAAATCTTTCAATAATTCTTTGTTTGTAGAATAGGTTTTTTGTCGAGTTCAAGAAAATCATTTCGAATTCTTATCTAGGTTAGAGAATCTTTGAATTCAATTTCCCAAAAAAGAGCATTTAGCGACGAATAGCACGACATGCAGATAAATCGAACTAAAGCAAATTTCCTTTTTYATGTTGTAGTTTGATTATGAAGCTTTGAATTTTGCTGGGTTTAAAAAATACAGTAAAAATTGTAGCTTTAAAAATTGTGGAAATTCTGAAAATCTGAAAAAAAAACTCATTTTTACACCACTTGCGAATCGTTTTGATTATTTGCAAAGTTCCAGTTCAGAGTTTAGAGTTTAAAAAATCCAGATTCTTTAAAGTAATCACAGATCCCAAAGATGGATTTTTTGTGATTTTTTCAACAAGAAAGCTCAAATGTGGTTTTGGCTGAAAATTGCTGAAAAATTGAAAATTCTGGTCGGGAAAAATCGAAAAACCGATTTTGATTACTGTAGATTCGTTTTTTGTGCAATGCACTATTTTTGAAGACAATTCGCACAGAATTTCAGAGGCTTATTCATTTTCGAACCCAATTATTTTCGTGAATAATTTTCCCTATTATTCTTCCTAATCTGCACCCTCTACGTTGATTTTTTTTTGACATGTTTTTGACATTTATCTTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCATTTCGAATTCTTATCTAGG</pcr_primer_p1>
		<pcr_primer_p2>GCAAGTGGTGTAAAAATGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATCATTTCGAATTCTTATCTAGGTTAGAGAATCTTTGAATTCAATTTCCCAAAAAAGAGCATTTAGCGACGAATAGCACGACATGCAGATAAATCGAACTAAAGCAAATTTCCTTTTTTATGTTGTAGTTTGATTATGAAGCTTTGAATTTTGCTGGGTTTAAAAAATACAGTAAAAATTGTAGCTTTAAAAATTGTGGAAATTCTGAAAATCTGAAAAAAAAACTCATTTTTACACCACTTGC</canonical_amplicon>
		<polymorphic_amplicon>AATCATTTCGAATTCTTATCTAGGTTAGAGAATCTTTGAATTCAATTTCCCAAAAAAGAGCATTTAGCGACGAATAGCACGACATGCAGATAAATCGAACTAAAGCAAATTTCCTTTTTYATGTTGTAGTTTGATTATGAAGCTTTGAATTTTGCTGGGTTTAAAAAATACAGTAAAAATTGTAGCTTTAAAAATTGTGGAAATTCTGAAAATCTGAAAAAAAAACTCATTTTTACACCACTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19846</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>435870</contig_pos>
        <strand>+</strand>
        <context>AGGAAATTTT[C/T]TAGGTCACTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTTTTGCACGCTAGCCAAATACTCGAGATCTGAAAAAGTAGGAAATTTT</left_flank>
        <right_flank>TAGGTCACTGAAAGTCTTCGATTTTTAATCTTCGCACCCCTACCTTCACA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGACCCCAAAATCAAAATCACTGTGTGTGTCCTGCCGGCCACCCAAACCGATTAATTTTCTCTTTTAATTTGCTTTCTCTCTTGCTCAATTTTCCACATTTTTTCTCTTTTCTCGAGAGTGACGCCTATATTTCCTCTGTTTTTGTCTAGTTGTAAATGCTCACAGGGAGAGTCCGCGACGACAAAAATTTCCCTGTTCCTTTATTTTTTGGCTGTAAGAGCTCTCACTTCGAATTTTCGTCGTGTTTTGTTTATATGTCGAAATCACGTCTTCACAATTCATTTTTGTGTCTAGAAAATAGAGAAAAAGGAGCTTTTTTATTGACATTGAGGTTTTGTTTTTCAGCTTTCTAGGTGCGACACCCTAAACGGTTATTATTTCAGAAAAAAAAGAAGCTGAAAATATTTTGCAGAGTAATAAAAAATGTGTTTTTCAGGAATCTATGAGCACTTTTGCACGCTAGCCAAATACTCGAGATCTGAAAAAGTAGGAAATTTTCTAGGTCACTGAAAGTCTTCGATTTTTAATCTTCGCACCCCTACCTTCACAATCATTTTTTTCCGTTTGAACAGAATCGTGAATTCATCATCATATTCTTTTTTCTTCGCTAATCCCATATCGAACTTATCACATTTACACATTGAATCAAAAACTTGAGACGGCGGATTTTTAATTCAATTTTTCATTTTTTTTTGCGGAAACTTGCTTAATGGAATACTTTTTTTAAAATTTGTTTAAGAGACATACGATTTTTTTTTCGTTGATCAGGACTTGAAAAACTGTAATTTAGCTACCGTATTCCAATAGAAGCCCACCCAGTACTCGAACTTTGTTCAATTATCTCGATTCCCTCAAAAGATGCCAAAAAAGTGTCAACTGATAAAATATTGGTGATATTATGATAAACATATTAGCAGTTGACTACATTTTAATATCTTTTGAAGGAACCAATATAATCGTGCTCATAGTTGATGTTTATGGCGTGGGCTTCTATTAGAG</canonical>
            <polymorphic>AGACCCCAAAATCAAAATCACTGTGTGTGTCCTGCCGGCCACCCAAACCGATTAATTTTCTCTTTTAATTTGCTTTCTCTCTTGCTCAATTTTCCACATTTTTTCTCTTTTCTCGAGAGTGACGCCTATATTTCCTCTGTTTTTGTCTAGTTGTAAATGCTCACAGGGAGAGTCCGCGACGACAAAAATTTCCCTGTTCCTTTATTTTTTGGCTGTAAGAGCTCTCACTTCGAATTTTCGTCGTGTTTTGTTTATATGTCGAAATCACGTCTTCACAATTCATTTTTGTGTCTAGAAAATAGAGAAAAAGGAGCTTTTTTATTGACATTGAGGTTTTGTTTTTCAGCTTTCTAGGTGCGACACCCTAAACGGTTATTATTTCAGAAAAAAAAGAAGCTGAAAATATTTTGCAGAGTAATAAAAAATGTGTTTTTCAGGAATCTATGAGCACTTTTGCACGCTAGCCAAATACTCGAGATCTGAAAAAGTAGGAAATTTTYTAGGTCACTGAAAGTCTTCGATTTTTAATCTTCGCACCCCTACCTTCACAATCATTTTTTTCCGTTTGAACAGAATCGTGAATTCATCATCATATTCTTTTTTCTTCGCTAATCCCATATCGAACTTATCACATTTACACATTGAATCAAAAACTTGAGACGGCGGATTTTTAATTCAATTTTTCATTTTTTTTTGCGGAAACTTGCTTAATGGAATACTTTTTTTAAAATTTGTTTAAGAGACATACGATTTTTTTTTCGTTGATCAGGACTTGAAAAACTGTAATTTAGCTACCGTATTCCAATAGAAGCCCACCCAGTACTCGAACTTTGTTCAATTATCTCGATTCCCTCAAAAGATGCCAAAAAAGTGTCAACTGATAAAATATTGGTGATATTATGATAAACATATTAGCAGTTGACTACATTTTAATATCTTTTGAAGGAACCAATATAATCGTGCTCATAGTTGATGTTTATGGCGTGGGCTTCTATTAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 147 145 110 59 39</canonical_bands>
                <polymorphic_bands>539 147 145 110 59</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATGTGTTTTTCAGGAATCTA</pcr_primer_p1>
		<pcr_primer_p2>GTCTCAAGTTTTTGATTCAATGT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AAAATGTGTTTTTCAGGAATCTATGAGCACTTTTGCACGCTAGCCAAATACTCGAGATCTGAAAAAGTAGGAAATTTTCTAGGTCACTGAAAGTCTTCGATTTTTAATCTTCGCACCCCTACCTTCACAATCATTTTTTTCCGTTTGAACAGAATCGTGAATTCATCATCATATTCTTTTTTCTTCGCTAATCCCATATCGAACTTATCACATTTACACATTGAATCAAAAACTTGAGAC</canonical_amplicon>
		<polymorphic_amplicon>AAAATGTGTTTTTCAGGAATCTATGAGCACTTTTGCACGCTAGCCAAATACTCGAGATCTGAAAAAGTAGGAAATTTTYTAGGTCACTGAAAGTCTTCGATTTTTAATCTTCGCACCCCTACCTTCACAATCATTTTTTTCCGTTTGAACAGAATCGTGAATTCATCATCATATTCTTTTTTCTTCGCTAATCCCATATCGAACTTATCACATTTACACATTGAATCAAAAACTTGAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19847</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>435916</contig_pos>
        <strand>+</strand>
        <context>ACCCCTACCT[A/T]CACAATCATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTCTAGGTCACTGAAAGTCTTCGATTTTTAATCTTCGCACCCCTACCT</left_flank>
        <right_flank>CACAATCATTTTTTTCCGTTTGAACAGAATCGTGAATTCATCATCATATT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCGATTAATTTTCTCTTTTAATTTGCTTTCTCTCTTGCTCAATTTTCCACATTTTTTCTCTTTTCTCGAGAGTGACGCCTATATTTCCTCTGTTTTTGTCTAGTTGTAAATGCTCACAGGGAGAGTCCGCGACGACAAAAATTTCCCTGTTCCTTTATTTTTTGGCTGTAAGAGCTCTCACTTCGAATTTTCGTCGTGTTTTGTTTATATGTCGAAATCACGTCTTCACAATTCATTTTTGTGTCTAGAAAATAGAGAAAAAGGAGCTTTTTTATTGACATTGAGGTTTTGTTTTTCAGCTTTCTAGGTGCGACACCCTAAACGGTTATTATTTCAGAAAAAAAAGAAGCTGAAAATATTTTGCAGAGTAATAAAAAATGTGTTTTTCAGGAATCTATGAGCACTTTTGCACGCTAGCCAAATACTCGAGATCTGAAAAAGTAGGAAATTTTCTAGGTCACTGAAAGTCTTCGATTTTTAATCTTCGCACCCCTACCTTCACAATCATTTTTTTCCGTTTGAACAGAATCGTGAATTCATCATCATATTCTTTTTTCTTCGCTAATCCCATATCGAACTTATCACATTTACACATTGAATCAAAAACTTGAGACGGCGGATTTTTAATTCAATTTTTCATTTTTTTTTGCGGAAACTTGCTTAATGGAATACTTTTTTTAAAATTTGTTTAAGAGACATACGATTTTTTTTTCGTTGATCAGGACTTGAAAAACTGTAATTTAGCTACCGTATTCCAATAGAAGCCCACCCAGTACTCGAACTTTGTTCAATTATCTCGATTCCCTCAAAAGATGCCAAAAAAGTGTCAACTGATAAAATATTGGTGATATTATGATAAACATATTAGCAGTTGACTACATTTTAATATCTTTTGAAGGAACCAATATAATCGTGCTCATAGTTGATGTTTATGGCGTGGGCTTCTATTAGAGAGAATGTGATAATTTACCGTAAACACTAATGGAACGCCACCCGAAC</canonical>
            <polymorphic>ACCGATTAATTTTCTCTTTTAATTTGCTTTCTCTCTTGCTCAATTTTCCACATTTTTTCTCTTTTCTCGAGAGTGACGCCTATATTTCCTCTGTTTTTGTCTAGTTGTAAATGCTCACAGGGAGAGTCCGCGACGACAAAAATTTCCCTGTTCCTTTATTTTTTGGCTGTAAGAGCTCTCACTTCGAATTTTCGTCGTGTTTTGTTTATATGTCGAAATCACGTCTTCACAATTCATTTTTGTGTCTAGAAAATAGAGAAAAAGGAGCTTTTTTATTGACATTGAGGTTTTGTTTTTCAGCTTTCTAGGTGCGACACCCTAAACGGTTATTATTTCAGAAAAAAAAGAAGCTGAAAATATTTTGCAGAGTAATAAAAAATGTGTTTTTCAGGAATCTATGAGCACTTTTGCACGCTAGCCAAATACTCGAGATCTGAAAAAGTAGGAAATTTTCTAGGTCACTGAAAGTCTTCGATTTTTAATCTTCGCACCCCTACCTWCACAATCATTTTTTTCCGTTTGAACAGAATCGTGAATTCATCATCATATTCTTTTTTCTTCGCTAATCCCATATCGAACTTATCACATTTACACATTGAATCAAAAACTTGAGACGGCGGATTTTTAATTCAATTTTTCATTTTTTTTTGCGGAAACTTGCTTAATGGAATACTTTTTTTAAAATTTGTTTAAGAGACATACGATTTTTTTTTCGTTGATCAGGACTTGAAAAACTGTAATTTAGCTACCGTATTCCAATAGAAGCCCACCCAGTACTCGAACTTTGTTCAATTATCTCGATTCCCTCAAAAGATGCCAAAAAAGTGTCAACTGATAAAATATTGGTGATATTATGATAAACATATTAGCAGTTGACTACATTTTAATATCTTTTGAAGGAACCAATATAATCGTGCTCATAGTTGATGTTTATGGCGTGGGCTTCTATTAGAGAGAATGTGATAATTTACCGTAAACACTAATGGAACGCCACCCGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATGTGTTTTTCAGGAATCTA</pcr_primer_p1>
		<pcr_primer_p2>GTCTCAAGTTTTTGATTCAATGT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AAAATGTGTTTTTCAGGAATCTATGAGCACTTTTGCACGCTAGCCAAATACTCGAGATCTGAAAAAGTAGGAAATTTTCTAGGTCACTGAAAGTCTTCGATTTTTAATCTTCGCACCCCTACCTTCACAATCATTTTTTTCCGTTTGAACAGAATCGTGAATTCATCATCATATTCTTTTTTCTTCGCTAATCCCATATCGAACTTATCACATTTACACATTGAATCAAAAACTTGAGAC</canonical_amplicon>
		<polymorphic_amplicon>AAAATGTGTTTTTCAGGAATCTATGAGCACTTTTGCACGCTAGCCAAATACTCGAGATCTGAAAAAGTAGGAAATTTTCTAGGTCACTGAAAGTCTTCGATTTTTAATCTTCGCACCCCTACCTWCACAATCATTTTTTTCCGTTTGAACAGAATCGTGAATTCATCATCATATTCTTTTTTCTTCGCTAATCCCATATCGAACTTATCACATTTACACATTGAATCAAAAACTTGAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19848</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>436073</contig_pos>
        <strand></strand>
        <context>TTTGCGGAAA[C/T]TTGCTTAATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTTGAGACGGCGGATTTTTAATTCAATTTTTCATTTTTTTTTGCGGAAA</left_flank>
        <right_flank>TTGCTTAATGGAATACTTTTTTTAAAATTTGTTTAAGAGACATACGATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTGGCTGTAAGAGCTCTCACTTCGAATTTTCGTCGTGTTTTGTTTATATGTCGAAATCACGTCTTCACAATTCATTTTTGTGTCTAGAAAATAGAGAAAAAGGAGCTTTTTTATTGACATTGAGGTTTTGTTTTTCAGCTTTCTAGGTGCGACACCCTAAACGGTTATTATTTCAGAAAAAAAAGAAGCTGAAAATATTTTGCAGAGTAATAAAAAATGTGTTTTTCAGGAATCTATGAGCACTTTTGCACGCTAGCCAAATACTCGAGATCTGAAAAAGTAGGAAATTTTCTAGGTCACTGAAAGTCTTCGATTTTTAATCTTCGCACCCCTACCTTCACAATCATTTTTTTCCGTTTGAACAGAATCGTGAATTCATCATCATATTCTTTTTTCTTCGCTAATCCCATATCGAACTTATCACATTTACACATTGAATCAAAAACTTGAGACGGCGGATTTTTAATTCAATTTTTCATTTTTTTTTGCGGAAACTTGCTTAATGGAATACTTTTTTTAAAATTTGTTTAAGAGACATACGATTTTTTTTTCGTTGATCAGGACTTGAAAAACTGTAATTTAGCTACCGTATTCCAATAGAAGCCCACCCAGTACTCGAACTTTGTTCAATTATCTCGATTCCCTCAAAAGATGCCAAAAAAGTGTCAACTGATAAAATATTGGTGATATTATGATAAACATATTAGCAGTTGACTACATTTTAATATCTTTTGAAGGAACCAATATAATCGTGCTCATAGTTGATGTTTATGGCGTGGGCTTCTATTAGAGAGAATGTGATAATTTACCGTAAACACTAATGGAACGCCACCCGAACCGTCAACGTTGAGCCCCTATATCTCATTCACTATAGAAGATATCAAAAAGTGTTTAACTATTAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAACTTTTTTATATCTTTCAAAAGAAGTGAGATATACAGGATCAAAGTTGACTGT</canonical>
            <polymorphic>ATTTTTTGGCTGTAAGAGCTCTCACTTCGAATTTTCGTCGTGTTTTGTTTATATGTCGAAATCACGTCTTCACAATTCATTTTTGTGTCTAGAAAATAGAGAAAAAGGAGCTTTTTTATTGACATTGAGGTTTTGTTTTTCAGCTTTCTAGGTGCGACACCCTAAACGGTTATTATTTCAGAAAAAAAAGAAGCTGAAAATATTTTGCAGAGTAATAAAAAATGTGTTTTTCAGGAATCTATGAGCACTTTTGCACGCTAGCCAAATACTCGAGATCTGAAAAAGTAGGAAATTTTCTAGGTCACTGAAAGTCTTCGATTTTTAATCTTCGCACCCCTACCTTCACAATCATTTTTTTCCGTTTGAACAGAATCGTGAATTCATCATCATATTCTTTTTTCTTCGCTAATCCCATATCGAACTTATCACATTTACACATTGAATCAAAAACTTGAGACGGCGGATTTTTAATTCAATTTTTCATTTTTTTTTGCGGAAAYTTGCTTAATGGAATACTTTTTTTAAAATTTGTTTAAGAGACATACGATTTTTTTTTCGTTGATCAGGACTTGAAAAACTGTAATTTAGCTACCGTATTCCAATAGAAGCCCACCCAGTACTCGAACTTTGTTCAATTATCTCGATTCCCTCAAAAGATGCCAAAAAAGTGTCAACTGATAAAATATTGGTGATATTATGATAAACATATTAGCAGTTGACTACATTTTAATATCTTTTGAAGGAACCAATATAATCGTGCTCATAGTTGATGTTTATGGCGTGGGCTTCTATTAGAGAGAATGTGATAATTTACCGTAAACACTAATGGAACGCCACCCGAACCGTCAACGTTGAGCCCCTATATCTCATTCACTATAGAAGATATCAAAAAGTGTTTAACTATTAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAACTTTTTTATATCTTTCAAAAGAAGTGAGATATACAGGATCAAAGTTGACTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGTCTTCGATTTTTAATCTTC</pcr_primer_p1>
		<pcr_primer_p2>AAGTCCTGATCAACGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>GAAAGTCTTCGATTTTTAATCTTCGCACCCCTACCTTCACAATCATTTTTTTCCGTTTGAACAGAATCGTGAATTCATCATCATATTCTTTTTTCTTCGCTAATCCCATATCGAACTTATCACATTTACACATTGAATCAAAAACTTGAGACGGCGGATTTTTAATTCAATTTTTCATTTTTTTTTGCGGAAACTTGCTTAATGGAATACTTTTTTTAAAATTTGTTTAAGAGACATACGATTTTTTTTTCGTTGATCAGGACTT</canonical_amplicon>
		<polymorphic_amplicon>GAAAGTCTTCGATTTTTAATCTTCGCACCCCTACCTTCACAATCATTTTTTTCCGTTTGAACAGAATCGTGAATTCATCATCATATTCTTTTTTCTTCGCTAATCCCATATCGAACTTATCACATTTACACATTGAATCAAAAACTTGAGACGGCGGATTTTTAATTCAATTTTTCATTTTTTTTTGCGGAAAYTTGCTTAATGGAATACTTTTTTTAAAATTTGTTTAAGAGACATACGATTTTTTTTTCGTTGATCAGGACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19849</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>436151</contig_pos>
        <strand></strand>
        <context>ACTTGAAAAA[C/T]TGTRATTTAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGTTTAAGAGACATACGATTTTTTTTTCGTTGATCAGGACTTGAAAAA</left_flank>
        <right_flank>TGTAATTTAGCTACCGTATTCCAATAGAAGCCCACCCAGTACTCGAACTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTGTGTCTAGAAAATAGAGAAAAAGGAGCTTTTTTATTGACATTGAGGTTTTGTTTTTCAGCTTTCTAGGTGCGACACCCTAAACGGTTATTATTTCAGAAAAAAAAGAAGCTGAAAATATTTTGCAGAGTAATAAAAAATGTGTTTTTCAGGAATCTATGAGCACTTTTGCACGCTAGCCAAATACTCGAGATCTGAAAAAGTAGGAAATTTTCTAGGTCACTGAAAGTCTTCGATTTTTAATCTTCGCACCCCTACCTTCACAATCATTTTTTTCCGTTTGAACAGAATCGTGAATTCATCATCATATTCTTTTTTCTTCGCTAATCCCATATCGAACTTATCACATTTACACATTGAATCAAAAACTTGAGACGGCGGATTTTTAATTCAATTTTTCATTTTTTTTTGCGGAAACTTGCTTAATGGAATACTTTTTTTAAAATTTGTTTAAGAGACATACGATTTTTTTTTCGTTGATCAGGACTTGAAAAACTGTAATTTAGCTACCGTATTCCAATAGAAGCCCACCCAGTACTCGAACTTTGTTCAATTATCTCGATTCCCTCAAAAGATGCCAAAAAAGTGTCAACTGATAAAATATTGGTGATATTATGATAAACATATTAGCAGTTGACTACATTTTAATATCTTTTGAAGGAACCAATATAATCGTGCTCATAGTTGATGTTTATGGCGTGGGCTTCTATTAGAGAGAATGTGATAATTTACCGTAAACACTAATGGAACGCCACCCGAACCGTCAACGTTGAGCCCCTATATCTCATTCACTATAGAAGATATCAAAAAGTGTTTAACTATTAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAACTTTTTTATATCTTTCAAAAGAAGTGAGATATACAGGATCAAAGTTGACTGTCCGGGTGGAATTCTATTAGAGTGTTTACGGTATTTAGTAGATTTAAAAAAAATTATGCTCAACATCGATAATCAAAAA</canonical>
            <polymorphic>ATTTTTGTGTCTAGAAAATAGAGAAAAAGGAGCTTTTTTATTGACATTGAGGTTTTGTTTTTCAGCTTTCTAGGTGCGACACCCTAAACGGTTATTATTTCAGAAAAAAAAGAAGCTGAAAATATTTTGCAGAGTAATAAAAAATGTGTTTTTCAGGAATCTATGAGCACTTTTGCACGCTAGCCAAATACTCGAGATCTGAAAAAGTAGGAAATTTTCTAGGTCACTGAAAGTCTTCGATTTTTAATCTTCGCACCCCTACCTTCACAATCATTTTTTTCCGTTTGAACAGAATCGTGAATTCATCATCATATTCTTTTTTCTTCGCTAATCCCATATCGAACTTATCACATTTACACATTGAATCAAAAACTTGAGACGGCGGATTTTTAATTCAATTTTTCATTTTTTTTTGCGGAAACTTGCTTAATGGAATACTTTTTTTAAAATTTGTTTAAGAGACATACGATTTTTTTTTCGTTGATCAGGACTTGAAAAAYTGTAATTTAGCTACCGTATTCCAATAGAAGCCCACCCAGTACTCGAACTTTGTTCAATTATCTCGATTCCCTCAAAAGATGCCAAAAAAGTGTCAACTGATAAAATATTGGTGATATTATGATAAACATATTAGCAGTTGACTACATTTTAATATCTTTTGAAGGAACCAATATAATCGTGCTCATAGTTGATGTTTATGGCGTGGGCTTCTATTAGAGAGAATGTGATAATTTACCGTAAACACTAATGGAACGCCACCCGAACCGTCAACGTTGAGCCCCTATATCTCATTCACTATAGAAGATATCAAAAAGTGTTTAACTATTAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAACTTTTTTATATCTTTCAAAAGAAGTGAGATATACAGGATCAAAGTTGACTGTCCGGGTGGAATTCTATTAGAGTGTTTACGGTATTTAGTAGATTTAAAAAAAATTATGCTCAACATCGATAATCAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>411 222 154 90 49 31 29 14</canonical_bands>
                <polymorphic_bands>425 222 154 90 49 31 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTTGTTTAAGAGACATACGA</pcr_primer_p1>
		<pcr_primer_p2>TCGATGTTGAGCATAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>545</pcr_amplicon_size>
		<canonical_amplicon>AAAATTTGTTTAAGAGACATACGATTTTTTTTTCGTTGATCAGGACTTGAAAAACTGTAATTTAGCTACCGTATTCCAATAGAAGCCCACCCAGTACTCGAACTTTGTTCAATTATCTCGATTCCCTCAAAAGATGCCAAAAAAGTGTCAACTGATAAAATATTGGTGATATTATGATAAACATATTAGCAGTTGACTACATTTTAATATCTTTTGAAGGAACCAATATAATCGTGCTCATAGTTGATGTTTATGGCGTGGGCTTCTATTAGAGAGAATGTGATAATTTACCGTAAACACTAATGGAACGCCACCCGAACCGTCAACGTTGAGCCCCTATATCTCATTCACTATAGAAGATATCAAAAAGTGTTTAACTATTAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAACTTTTTTATATCTTTCAAAAGAAGTGAGATATACAGGATCAAAGTTGACTGTCCGGGTGGAATTCTATTAGAGTGTTTACGGTATTTAGTAGATTTAAAAAAAATTATGCTCAACATCGA</canonical_amplicon>
		<polymorphic_amplicon>AAAATTTGTTTAAGAGACATACGATTTTTTTTTCGTTGATCAGGACTTGAAAAAYTGTAATTTAGCTACCGTATTCCAATAGAAGCCCACCCAGTACTCGAACTTTGTTCAATTATCTCGATTCCCTCAAAAGATGCCAAAAAAGTGTCAACTGATAAAATATTGGTGATATTATGATAAACATATTAGCAGTTGACTACATTTTAATATCTTTTGAAGGAACCAATATAATCGTGCTCATAGTTGATGTTTATGGCGTGGGCTTCTATTAGAGAGAATGTGATAATTTACCGTAAACACTAATGGAACGCCACCCGAACCGTCAACGTTGAGCCCCTATATCTCATTCACTATAGAAGATATCAAAAAGTGTTTAACTATTAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAACTTTTTTATATCTTTCAAAAGAAGTGAGATATACAGGATCAAAGTTGACTGTCCGGGTGGAATTCTATTAGAGTGTTTACGGTATTTAGTAGATTTAAAAAAAATTATGCTCAACATCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19850</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>436155</contig_pos>
        <strand></strand>
        <context>GAAAAAYTGT[A/G]ATTTAGCTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTAAGAGACATACGATTTTTTTTTCGTTGATCAGGACTTGAAAAACTGT</left_flank>
        <right_flank>ATTTAGCTACCGTATTCCAATAGAAGCCCACCCAGTACTCGAACTTTGTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTGTCTAGAAAATAGAGAAAAAGGAGCTTTTTTATTGACATTGAGGTTTTGTTTTTCAGCTTTCTAGGTGCGACACCCTAAACGGTTATTATTTCAGAAAAAAAAGAAGCTGAAAATATTTTGCAGAGTAATAAAAAATGTGTTTTTCAGGAATCTATGAGCACTTTTGCACGCTAGCCAAATACTCGAGATCTGAAAAAGTAGGAAATTTTCTAGGTCACTGAAAGTCTTCGATTTTTAATCTTCGCACCCCTACCTTCACAATCATTTTTTTCCGTTTGAACAGAATCGTGAATTCATCATCATATTCTTTTTTCTTCGCTAATCCCATATCGAACTTATCACATTTACACATTGAATCAAAAACTTGAGACGGCGGATTTTTAATTCAATTTTTCATTTTTTTTTGCGGAAACTTGCTTAATGGAATACTTTTTTTAAAATTTGTTTAAGAGACATACGATTTTTTTTTCGTTGATCAGGACTTGAAAAACTGTAATTTAGCTACCGTATTCCAATAGAAGCCCACCCAGTACTCGAACTTTGTTCAATTATCTCGATTCCCTCAAAAGATGCCAAAAAAGTGTCAACTGATAAAATATTGGTGATATTATGATAAACATATTAGCAGTTGACTACATTTTAATATCTTTTGAAGGAACCAATATAATCGTGCTCATAGTTGATGTTTATGGCGTGGGCTTCTATTAGAGAGAATGTGATAATTTACCGTAAACACTAATGGAACGCCACCCGAACCGTCAACGTTGAGCCCCTATATCTCATTCACTATAGAAGATATCAAAAAGTGTTTAACTATTAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAACTTTTTTATATCTTTCAAAAGAAGTGAGATATACAGGATCAAAGTTGACTGTCCGGGTGGAATTCTATTAGAGTGTTTACGGTATTTAGTAGATTTAAAAAAAATTATGCTCAACATCGATAATCAAAAACATT</canonical>
            <polymorphic>TTGTGTCTAGAAAATAGAGAAAAAGGAGCTTTTTTATTGACATTGAGGTTTTGTTTTTCAGCTTTCTAGGTGCGACACCCTAAACGGTTATTATTTCAGAAAAAAAAGAAGCTGAAAATATTTTGCAGAGTAATAAAAAATGTGTTTTTCAGGAATCTATGAGCACTTTTGCACGCTAGCCAAATACTCGAGATCTGAAAAAGTAGGAAATTTTCTAGGTCACTGAAAGTCTTCGATTTTTAATCTTCGCACCCCTACCTTCACAATCATTTTTTTCCGTTTGAACAGAATCGTGAATTCATCATCATATTCTTTTTTCTTCGCTAATCCCATATCGAACTTATCACATTTACACATTGAATCAAAAACTTGAGACGGCGGATTTTTAATTCAATTTTTCATTTTTTTTTGCGGAAACTTGCTTAATGGAATACTTTTTTTAAAATTTGTTTAAGAGACATACGATTTTTTTTTCGTTGATCAGGACTTGAAAAACTGTRATTTAGCTACCGTATTCCAATAGAAGCCCACCCAGTACTCGAACTTTGTTCAATTATCTCGATTCCCTCAAAAGATGCCAAAAAAGTGTCAACTGATAAAATATTGGTGATATTATGATAAACATATTAGCAGTTGACTACATTTTAATATCTTTTGAAGGAACCAATATAATCGTGCTCATAGTTGATGTTTATGGCGTGGGCTTCTATTAGAGAGAATGTGATAATTTACCGTAAACACTAATGGAACGCCACCCGAACCGTCAACGTTGAGCCCCTATATCTCATTCACTATAGAAGATATCAAAAAGTGTTTAACTATTAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAACTTTTTTATATCTTTCAAAAGAAGTGAGATATACAGGATCAAAGTTGACTGTCCGGGTGGAATTCTATTAGAGTGTTTACGGTATTTAGTAGATTTAAAAAAAATTATGCTCAACATCGATAATCAAAAACATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>208 201 174 92 87 56 52 51 42 32 5</canonical_bands>
                <polymorphic_bands>208 201 174 108 92 87 51 42 32 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTTGTTTAAGAGACATACGA</pcr_primer_p1>
		<pcr_primer_p2>TCGATGTTGAGCATAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>545</pcr_amplicon_size>
		<canonical_amplicon>AAAATTTGTTTAAGAGACATACGATTTTTTTTTCGTTGATCAGGACTTGAAAAACTGTAATTTAGCTACCGTATTCCAATAGAAGCCCACCCAGTACTCGAACTTTGTTCAATTATCTCGATTCCCTCAAAAGATGCCAAAAAAGTGTCAACTGATAAAATATTGGTGATATTATGATAAACATATTAGCAGTTGACTACATTTTAATATCTTTTGAAGGAACCAATATAATCGTGCTCATAGTTGATGTTTATGGCGTGGGCTTCTATTAGAGAGAATGTGATAATTTACCGTAAACACTAATGGAACGCCACCCGAACCGTCAACGTTGAGCCCCTATATCTCATTCACTATAGAAGATATCAAAAAGTGTTTAACTATTAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAACTTTTTTATATCTTTCAAAAGAAGTGAGATATACAGGATCAAAGTTGACTGTCCGGGTGGAATTCTATTAGAGTGTTTACGGTATTTAGTAGATTTAAAAAAAATTATGCTCAACATCGA</canonical_amplicon>
		<polymorphic_amplicon>AAAATTTGTTTAAGAGACATACGATTTTTTTTTCGTTGATCAGGACTTGAAAAACTGTRATTTAGCTACCGTATTCCAATAGAAGCCCACCCAGTACTCGAACTTTGTTCAATTATCTCGATTCCCTCAAAAGATGCCAAAAAAGTGTCAACTGATAAAATATTGGTGATATTATGATAAACATATTAGCAGTTGACTACATTTTAATATCTTTTGAAGGAACCAATATAATCGTGCTCATAGTTGATGTTTATGGCGTGGGCTTCTATTAGAGAGAATGTGATAATTTACCGTAAACACTAATGGAACGCCACCCGAACCGTCAACGTTGAGCCCCTATATCTCATTCACTATAGAAGATATCAAAAAGTGTTTAACTATTAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAACTTTTTTATATCTTTCAAAAGAAGTGAGATATACAGGATCAAAGTTGACTGTCCGGGTGGAATTCTATTAGAGTGTTTACGGTATTTAGTAGATTTAAAAAAAATTATGCTCAACATCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19851</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>439466</contig_pos>
        <strand></strand>
        <context>CTTCCTCATA[C/A]AAGATATACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CTAGTTCAAAAAAAAGTTATCTTGCTTTATATAGGGTGATCTTCCTCATA</left_flank>
        <right_flank>AAGATATACTTTTGAGATGGAATAGTATGGATTTTTGAATTCTTTAAAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGAAGCCAAGAAAAATCGAACTAGTAAGGGCCCTCCTATTACAGGTTTCACGGTATTTTCCATTTTTCCGACCCAGCTCAGTTTTTAAGAAATTCTCGCTATCACCTTCATATTACCTTTTTTTTCCATCATGAATTTTTCCGAATCCTTTAGTGTAAAATTGGGGAATTCTCGTTTTTTATCATTCAAGGTTTTTTTTATGTTTCCATTACTTCGCAATTTCCAGATTTTTAGCTTATCATGTTTTGTTATCAGCTATTCCCAGATTTTTTTTAGCTTCACGAATTTCAGAAGTTTCAAGTCATTCCCCAAAAAAAAACAATCGTCCGAGAAAATTGTGATTTTTGGAAACTCCGAGAAATCTGACATATAACTTTTCTGGAAATCCGAAATTTTTAATAAACTACAGTAATTCAATTTTTCACTTTTATCCAATTATATTTTTATCTAGTTCAAAAAAAAGTTATCTTGCTTTATATAGGGTGATCTTCCTCATACAAGATATACTTTTGAGATGGAATAGTATGGATTTTTGAATTCTTTAAAAGTGACATCTGAAAATTTACAATCTTTCTTTTTGTCACCTAGATTTTTTTTTTGCCAAAACATCATTTTCAGCCCAGTACTGTAGATCGTACCATTTTCCGAACCCCTCTAAACCAATAAACATCTAAAATTCCAAATTTTTGCAGGCTCTGGAATTGGCTCGATCGGCCTACCAATTCTTGGCGGTCGAGGGCGTGGAGTCATGTCTGATAGTCATATGCAACGAACATTTAACGAAGCAATGAGGCAGAGGAGGACCAGTTTACCAGCAAATAGTTTATCGCTGAATGGAACCAAAAGTTTGGTGAGTTCAAAAAAGTCCGAAGATGCCTAGCTAGATATCTGCACTGCAATATTTTCCTTATCATCATTATCACTTCTTCTGAGAAAAAGATCAAAAACCTCTGAATTATCTTTGCGCGTCCCCTTTTCGCACAGACATCGTTTGATGG</canonical>
            <polymorphic>ATAGAAGCCAAGAAAAATCGAACTAGTAAGGGCCCTCCTATTACAGGTTTCACGGTATTTTCCATTTTTCCGACCCAGCTCAGTTTTTAAGAAATTCTCGCTATCACCTTCATATTACCTTTTTTTTCCATCATGAATTTTTCCGAATCCTTTAGTGTAAAATTGGGGAATTCTCGTTTTTTATCATTCAAGGTTTTTTTTATGTTTCCATTACTTCGCAATTTCCAGATTTTTAGCTTATCATGTTTTGTTATCAGCTATTCCCAGATTTTTTTTAGCTTCACGAATTTCAGAAGTTTCAAGTCATTCCCCAAAAAAAAACAATCGTCCGAGAAAATTGTGATTTTTGGAAACTCCGAGAAATCTGACATATAACTTTTCTGGAAATCCGAAATTTTTAATAAACTACAGTAATTCAATTTTTCACTTTTATCCAATTATATTTTTATCTAGTTCAAAAAAAAGTTATCTTGCTTTATATAGGGTGATCTTCCTCATAMAAGATATACTTTTGAGATGGAATAGTATGGATTTTTGAATTCTTTAAAAGTGACATCTGAAAATTTACAATCTTTCTTTTTGTCACCTAGATTTTTTTTTTGCCAAAACATCATTTTCAGCCCAGTACTGTAGATCGTACCATTTTCCGAACCCCTCTAAACCAATAAACATCTAAAATTCCAAATTTTTGCAGGCTCTGGAATTGGCTCGATCGGCCTACCAATTCTTGGCGGTCGAGGGCGTGGAGTCATGTCTGATAGTCATATGCAACGAACATTTAACGAAGCAATGAGGCAGAGGAGGACCAGTTTACCAGCAAATAGTTTATCGCTGAATGGAACCAAAAGTTTGGTGAGTTCAAAAAAGTCCGAAGATGCCTAGCTAGATATCTGCACTGCAATATTTTCCTTATCATCATTATCACTTCTTCTGAGAAAAAGATCAAAAACCTCTGAATTATCTTTGCGCGTCCCCTTTTCGCACAGACATCGTTTGATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGTGATTTTTGGAAACTCC</pcr_primer_p1>
		<pcr_primer_p2>GGTGACAAAAAGAAAGATTGTAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTGTGATTTTTGGAAACTCCGAGAAATCTGACATATAACTTTTCTGGAAATCCGAAATTTTTAATAAACTACAGTAATTCAATTTTTCACTTTTATCCAATTATATTTTTATCTAGTTCAAAAAAAAGTTATCTTGCTTTATATAGGGTGATCTTCCTCATACAAGATATACTTTTGAGATGGAATAGTATGGATTTTTGAATTCTTTAAAAGTGACATCTGAAAATTTACAATCTTTCTTTTTGTCACC</canonical_amplicon>
		<polymorphic_amplicon>ATTGTGATTTTTGGAAACTCCGAGAAATCTGACATATAACTTTTCTGGAAATCCGAAATTTTTAATAAACTACAGTAATTCAATTTTTCACTTTTATCCAATTATATTTTTATCTAGTTCAAAAAAAAGTTATCTTGCTTTATATAGGGTGATCTTCCTCATAMAAGATATACTTTTGAGATGGAATAGTATGGATTTTTGAATTCTTTAAAAGTGACATCTGAAAATTTACAATCTTTCTTTTTGTCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19852</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>439455</contig_pos>
        <strand></strand>
        <context>TATAGGGTGA[T/G]CTTCCTCATA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TATATTTTTATCTAGTTCAAAAAAAAGTTATCTTGCTTTATATAGGGTGA</left_flank>
        <right_flank>CTTCCTCATACAAGATATACTTTTGAGATGGAATAGTATGGATTTTTGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATATCTTACATAGAAGCCAAGAAAAATCGAACTAGTAAGGGCCCTCCTATTACAGGTTTCACGGTATTTTCCATTTTTCCGACCCAGCTCAGTTTTTAAGAAATTCTCGCTATCACCTTCATATTACCTTTTTTTTCCATCATGAATTTTTCCGAATCCTTTAGTGTAAAATTGGGGAATTCTCGTTTTTTATCATTCAAGGTTTTTTTTATGTTTCCATTACTTCGCAATTTCCAGATTTTTAGCTTATCATGTTTTGTTATCAGCTATTCCCAGATTTTTTTTAGCTTCACGAATTTCAGAAGTTTCAAGTCATTCCCCAAAAAAAAACAATCGTCCGAGAAAATTGTGATTTTTGGAAACTCCGAGAAATCTGACATATAACTTTTCTGGAAATCCGAAATTTTTAATAAACTACAGTAATTCAATTTTTCACTTTTATCCAATTATATTTTTATCTAGTTCAAAAAAAAGTTATCTTGCTTTATATAGGGTGATCTTCCTCATACAAGATATACTTTTGAGATGGAATAGTATGGATTTTTGAATTCTTTAAAAGTGACATCTGAAAATTTACAATCTTTCTTTTTGTCACCTAGATTTTTTTTTTGCCAAAACATCATTTTCAGCCCAGTACTGTAGATCGTACCATTTTCCGAACCCCTCTAAACCAATAAACATCTAAAATTCCAAATTTTTGCAGGCTCTGGAATTGGCTCGATCGGCCTACCAATTCTTGGCGGTCGAGGGCGTGGAGTCATGTCTGATAGTCATATGCAACGAACATTTAACGAAGCAATGAGGCAGAGGAGGACCAGTTTACCAGCAAATAGTTTATCGCTGAATGGAACCAAAAGTTTGGTGAGTTCAAAAAAGTCCGAAGATGCCTAGCTAGATATCTGCACTGCAATATTTTCCTTATCATCATTATCACTTCTTCTGAGAAAAAGATCAAAAACCTCTGAATTATCTTTGCGCGTCCCCTTTTCGCACAGACA</canonical>
            <polymorphic>TGATATCTTACATAGAAGCCAAGAAAAATCGAACTAGTAAGGGCCCTCCTATTACAGGTTTCACGGTATTTTCCATTTTTCCGACCCAGCTCAGTTTTTAAGAAATTCTCGCTATCACCTTCATATTACCTTTTTTTTCCATCATGAATTTTTCCGAATCCTTTAGTGTAAAATTGGGGAATTCTCGTTTTTTATCATTCAAGGTTTTTTTTATGTTTCCATTACTTCGCAATTTCCAGATTTTTAGCTTATCATGTTTTGTTATCAGCTATTCCCAGATTTTTTTTAGCTTCACGAATTTCAGAAGTTTCAAGTCATTCCCCAAAAAAAAACAATCGTCCGAGAAAATTGTGATTTTTGGAAACTCCGAGAAATCTGACATATAACTTTTCTGGAAATCCGAAATTTTTAATAAACTACAGTAATTCAATTTTTCACTTTTATCCAATTATATTTTTATCTAGTTCAAAAAAAAGTTATCTTGCTTTATATAGGGTGAKCTTCCTCATACAAGATATACTTTTGAGATGGAATAGTATGGATTTTTGAATTCTTTAAAAGTGACATCTGAAAATTTACAATCTTTCTTTTTGTCACCTAGATTTTTTTTTTGCCAAAACATCATTTTCAGCCCAGTACTGTAGATCGTACCATTTTCCGAACCCCTCTAAACCAATAAACATCTAAAATTCCAAATTTTTGCAGGCTCTGGAATTGGCTCGATCGGCCTACCAATTCTTGGCGGTCGAGGGCGTGGAGTCATGTCTGATAGTCATATGCAACGAACATTTAACGAAGCAATGAGGCAGAGGAGGACCAGTTTACCAGCAAATAGTTTATCGCTGAATGGAACCAAAAGTTTGGTGAGTTCAAAAAAGTCCGAAGATGCCTAGCTAGATATCTGCACTGCAATATTTTCCTTATCATCATTATCACTTCTTCTGAGAAAAAGATCAAAAACCTCTGAATTATCTTTGCGCGTCCCCTTTTCGCACAGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>497 230 146 78 49</canonical_bands>
                <polymorphic_bands>643 230 78 49</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGTGATTTTTGGAAACTCC</pcr_primer_p1>
		<pcr_primer_p2>GGTGACAAAAAGAAAGATTGTAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTGTGATTTTTGGAAACTCCGAGAAATCTGACATATAACTTTTCTGGAAATCCGAAATTTTTAATAAACTACAGTAATTCAATTTTTCACTTTTATCCAATTATATTTTTATCTAGTTCAAAAAAAAGTTATCTTGCTTTATATAGGGTGATCTTCCTCATACAAGATATACTTTTGAGATGGAATAGTATGGATTTTTGAATTCTTTAAAAGTGACATCTGAAAATTTACAATCTTTCTTTTTGTCACC</canonical_amplicon>
		<polymorphic_amplicon>ATTGTGATTTTTGGAAACTCCGAGAAATCTGACATATAACTTTTCTGGAAATCCGAAATTTTTAATAAACTACAGTAATTCAATTTTTCACTTTTATCCAATTATATTTTTATCTAGTTCAAAAAAAAGTTATCTTGCTTTATATAGGGTGAKCTTCCTCATACAAGATATACTTTTGAGATGGAATAGTATGGATTTTTGAATTCTTTAAAAGTGACATCTGAAAATTTACAATCTTTCTTTTTGTCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19853</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>439296</contig_pos>
        <strand></strand>
        <context>AACAATCGTC[C/A]GAGAAAATTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTCACGAATTTCAGAAGTTTCAAGTCATTCCCCAAAAAAAAACAATCGTC</left_flank>
        <right_flank>GAGAAAATTGTGATTTTTGGAAACTCCGAGAAATCTGACATATAACTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGTGGTACGGTATTTGTATGATGCGGAAGTGTAAGATGCGCAACTATTTTTTACCTTTGAGCTAATTTATCTCGGTACTTTTTGAATGTACAAAAAATTTGTCAATTTTTAAATTGTTTATCATAATTTACCAGGATTTTATCAGTTGGCAAATTTTTGATATCTTACATAGAAGCCAAGAAAAATCGAACTAGTAAGGGCCCTCCTATTACAGGTTTCACGGTATTTTCCATTTTTCCGACCCAGCTCAGTTTTTAAGAAATTCTCGCTATCACCTTCATATTACCTTTTTTTTCCATCATGAATTTTTCCGAATCCTTTAGTGTAAAATTGGGGAATTCTCGTTTTTTATCATTCAAGGTTTTTTTTATGTTTCCATTACTTCGCAATTTCCAGATTTTTAGCTTATCATGTTTTGTTATCAGCTATTCCCAGATTTTTTTTAGCTTCACGAATTTCAGAAGTTTCAAGTCATTCCCCAAAAAAAAACAATCGTCCGAGAAAATTGTGATTTTTGGAAACTCCGAGAAATCTGACATATAACTTTTCTGGAAATCCGAAATTTTTAATAAACTACAGTAATTCAATTTTTCACTTTTATCCAATTATATTTTTATCTAGTTCAAAAAAAAGTTATCTTGCTTTATATAGGGTGATCTTCCTCATACAAGATATACTTTTGAGATGGAATAGTATGGATTTTTGAATTCTTTAAAAGTGACATCTGAAAATTTACAATCTTTCTTTTTGTCACCTAGATTTTTTTTTTGCCAAAACATCATTTTCAGCCCAGTACTGTAGATCGTACCATTTTCCGAACCCCTCTAAACCAATAAACATCTAAAATTCCAAATTTTTGCAGGCTCTGGAATTGGCTCGATCGGCCTACCAATTCTTGGCGGTCGAGGGCGTGGAGTCATGTCTGATAGTCATATGCAACGAACATTTAACGAAGCAATGAGGCAGAGGAGGACCAGTTTACCAGCAAATAGTTTATC</canonical>
            <polymorphic>TCAGTGGTACGGTATTTGTATGATGCGGAAGTGTAAGATGCGCAACTATTTTTTACCTTTGAGCTAATTTATCTCGGTACTTTTTGAATGTACAAAAAATTTGTCAATTTTTAAATTGTTTATCATAATTTACCAGGATTTTATCAGTTGGCAAATTTTTGATATCTTACATAGAAGCCAAGAAAAATCGAACTAGTAAGGGCCCTCCTATTACAGGTTTCACGGTATTTTCCATTTTTCCGACCCAGCTCAGTTTTTAAGAAATTCTCGCTATCACCTTCATATTACCTTTTTTTTCCATCATGAATTTTTCCGAATCCTTTAGTGTAAAATTGGGGAATTCTCGTTTTTTATCATTCAAGGTTTTTTTTATGTTTCCATTACTTCGCAATTTCCAGATTTTTAGCTTATCATGTTTTGTTATCAGCTATTCCCAGATTTTTTTTAGCTTCACGAATTTCAGAAGTTTCAAGTCATTCCCCAAAAAAAAACAATCGTCMGAGAAAATTGTGATTTTTGGAAACTCCGAGAAATCTGACATATAACTTTTCTGGAAATCCGAAATTTTTAATAAACTACAGTAATTCAATTTTTCACTTTTATCCAATTATATTTTTATCTAGTTCAAAAAAAAGTTATCTTGCTTTATATAGGGTGATCTTCCTCATACAAGATATACTTTTGAGATGGAATAGTATGGATTTTTGAATTCTTTAAAAGTGACATCTGAAAATTTACAATCTTTCTTTTTGTCACCTAGATTTTTTTTTTGCCAAAACATCATTTTCAGCCCAGTACTGTAGATCGTACCATTTTCCGAACCCCTCTAAACCAATAAACATCTAAAATTCCAAATTTTTGCAGGCTCTGGAATTGGCTCGATCGGCCTACCAATTCTTGGCGGTCGAGGGCGTGGAGTCATGTCTGATAGTCATATGCAACGAACATTTAACGAAGCAATGAGGCAGAGGAGGACCAGTTTACCAGCAAATAGTTTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAGCTTCACGAATTTCAGA</pcr_primer_p1>
		<pcr_primer_p2>TCCATACTATTCCATCTCAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>TTTAGCTTCACGAATTTCAGAAGTTTCAAGTCATTCCCCAAAAAAAAACAATCGTCCGAGAAAATTGTGATTTTTGGAAACTCCGAGAAATCTGACATATAACTTTTCTGGAAATCCGAAATTTTTAATAAACTACAGTAATTCAATTTTTCACTTTTATCCAATTATATTTTTATCTAGTTCAAAAAAAAGTTATCTTGCTTTATATAGGGTGATCTTCCTCATACAAGATATACTTTTGAGATGGAATAGTATGGA</canonical_amplicon>
		<polymorphic_amplicon>TTTAGCTTCACGAATTTCAGAAGTTTCAAGTCATTCCCCAAAAAAAAACAATCGTCMGAGAAAATTGTGATTTTTGGAAACTCCGAGAAATCTGACATATAACTTTTCTGGAAATCCGAAATTTTTAATAAACTACAGTAATTCAATTTTTCACTTTTATCCAATTATATTTTTATCTAGTTCAAAAAAAAGTTATCTTGCTTTATATAGGGTGATCTTCCTCATACAAGATATACTTTTGAGATGGAATAGTATGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19854</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>439229</contig_pos>
        <strand>+</strand>
        <context>ATCAGCTATT[C/G]CCAGATTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACTTCGCAATTTCCAGATTTTTAGCTTATCATGTTTTGTTATCAGCTATT</left_flank>
        <right_flank>CCAGATTTTTTTTAGCTTCACGAATTTCAGAAGTTTCAAGTCATTCCCCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATTAGGACACCTTTTAGTGGTGAGAATTCAATGATTTTCGATGATGAATGATTAGAAGTGCAAGGTCAGTGGTACGGTATTTGTATGATGCGGAAGTGTAAGATGCGCAACTATTTTTTACCTTTGAGCTAATTTATCTCGGTACTTTTTGAATGTACAAAAAATTTGTCAATTTTTAAATTGTTTATCATAATTTACCAGGATTTTATCAGTTGGCAAATTTTTGATATCTTACATAGAAGCCAAGAAAAATCGAACTAGTAAGGGCCCTCCTATTACAGGTTTCACGGTATTTTCCATTTTTCCGACCCAGCTCAGTTTTTAAGAAATTCTCGCTATCACCTTCATATTACCTTTTTTTTCCATCATGAATTTTTCCGAATCCTTTAGTGTAAAATTGGGGAATTCTCGTTTTTTATCATTCAAGGTTTTTTTTATGTTTCCATTACTTCGCAATTTCCAGATTTTTAGCTTATCATGTTTTGTTATCAGCTATTCCCAGATTTTTTTTAGCTTCACGAATTTCAGAAGTTTCAAGTCATTCCCCAAAAAAAAACAATCGTCCGAGAAAATTGTGATTTTTGGAAACTCCGAGAAATCTGACATATAACTTTTCTGGAAATCCGAAATTTTTAATAAACTACAGTAATTCAATTTTTCACTTTTATCCAATTATATTTTTATCTAGTTCAAAAAAAAGTTATCTTGCTTTATATAGGGTGATCTTCCTCATACAAGATATACTTTTGAGATGGAATAGTATGGATTTTTGAATTCTTTAAAAGTGACATCTGAAAATTTACAATCTTTCTTTTTGTCACCTAGATTTTTTTTTTGCCAAAACATCATTTTCAGCCCAGTACTGTAGATCGTACCATTTTCCGAACCCCTCTAAACCAATAAACATCTAAAATTCCAAATTTTTGCAGGCTCTGGAATTGGCTCGATCGGCCTACCAATTCTTGGCGGTCGAGGGCGTGGAGTCATGTCTGATAGTC</canonical>
            <polymorphic>AGATTAGGACACCTTTTAGTGGTGAGAATTCAATGATTTTCGATGATGAATGATTAGAAGTGCAAGGTCAGTGGTACGGTATTTGTATGATGCGGAAGTGTAAGATGCGCAACTATTTTTTACCTTTGAGCTAATTTATCTCGGTACTTTTTGAATGTACAAAAAATTTGTCAATTTTTAAATTGTTTATCATAATTTACCAGGATTTTATCAGTTGGCAAATTTTTGATATCTTACATAGAAGCCAAGAAAAATCGAACTAGTAAGGGCCCTCCTATTACAGGTTTCACGGTATTTTCCATTTTTCCGACCCAGCTCAGTTTTTAAGAAATTCTCGCTATCACCTTCATATTACCTTTTTTTTCCATCATGAATTTTTCCGAATCCTTTAGTGTAAAATTGGGGAATTCTCGTTTTTTATCATTCAAGGTTTTTTTTATGTTTCCATTACTTCGCAATTTCCAGATTTTTAGCTTATCATGTTTTGTTATCAGCTATTSCCAGATTTTTTTTAGCTTCACGAATTTCAGAAGTTTCAAGTCATTCCCCAAAAAAAAACAATCGTCCGAGAAAATTGTGATTTTTGGAAACTCCGAGAAATCTGACATATAACTTTTCTGGAAATCCGAAATTTTTAATAAACTACAGTAATTCAATTTTTCACTTTTATCCAATTATATTTTTATCTAGTTCAAAAAAAAGTTATCTTGCTTTATATAGGGTGATCTTCCTCATACAAGATATACTTTTGAGATGGAATAGTATGGATTTTTGAATTCTTTAAAAGTGACATCTGAAAATTTACAATCTTTCTTTTTGTCACCTAGATTTTTTTTTTGCCAAAACATCATTTTCAGCCCAGTACTGTAGATCGTACCATTTTCCGAACCCCTCTAAACCAATAAACATCTAAAATTCCAAATTTTTGCAGGCTCTGGAATTGGCTCGATCGGCCTACCAATTCTTGGCGGTCGAGGGCGTGGAGTCATGTCTGATAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCCATCATGAATTTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATATGTCAGATTTCTCGGAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCCATCATGAATTTTTCCGAATCCTTTAGTGTAAAATTGGGGAATTCTCGTTTTTTATCATTCAAGGTTTTTTTTATGTTTCCATTACTTCGCAATTTCCAGATTTTTAGCTTATCATGTTTTGTTATCAGCTATTCCCAGATTTTTTTTAGCTTCACGAATTTCAGAAGTTTCAAGTCATTCCCCAAAAAAAAACAATCGTCCGAGAAAATTGTGATTTTTGGAAACTCCGAGAAATCTGACATAT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCCATCATGAATTTTTCCGAATCCTTTAGTGTAAAATTGGGGAATTCTCGTTTTTTATCATTCAAGGTTTTTTTTATGTTTCCATTACTTCGCAATTTCCAGATTTTTAGCTTATCATGTTTTGTTATCAGCTATTSCCAGATTTTTTTTAGCTTCACGAATTTCAGAAGTTTCAAGTCATTCCCCAAAAAAAAACAATCGTCCGAGAAAATTGTGATTTTTGGAAACTCCGAGAAATCTGACATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19855</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>439110</contig_pos>
        <strand></strand>
        <context>TGAATTTTTC[C/A]GAATCCTTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATTCTCGCTATCACCTTCATATTACCTTTTTTTTCCATCATGAATTTTTC</left_flank>
        <right_flank>GAATCCTTTAGTGTAAAATTGGGGAATTCTCGTTTTTTATCATTCAAGGT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGTATTGAAACTGATTTGATAGTTCTGTGATCATTGAGATATTCATGTTCTATCAAGTGTGAGATCAGATTGAACTTTGTGTAGGAAAATGTAGATTTTGTTGCCAAATGACCTTTTAGATTAGGACACCTTTTAGTGGTGAGAATTCAATGATTTTCGATGATGAATGATTAGAAGTGCAAGGTCAGTGGTACGGTATTTGTATGATGCGGAAGTGTAAGATGCGCAACTATTTTTTACCTTTGAGCTAATTTATCTCGGTACTTTTTGAATGTACAAAAAATTTGTCAATTTTTAAATTGTTTATCATAATTTACCAGGATTTTATCAGTTGGCAAATTTTTGATATCTTACATAGAAGCCAAGAAAAATCGAACTAGTAAGGGCCCTCCTATTACAGGTTTCACGGTATTTTCCATTTTTCCGACCCAGCTCAGTTTTTAAGAAATTCTCGCTATCACCTTCATATTACCTTTTTTTTCCATCATGAATTTTTCCGAATCCTTTAGTGTAAAATTGGGGAATTCTCGTTTTTTATCATTCAAGGTTTTTTTTATGTTTCCATTACTTCGCAATTTCCAGATTTTTAGCTTATCATGTTTTGTTATCAGCTATTCCCAGATTTTTTTTAGCTTCACGAATTTCAGAAGTTTCAAGTCATTCCCCAAAAAAAAACAATCGTCCGAGAAAATTGTGATTTTTGGAAACTCCGAGAAATCTGACATATAACTTTTCTGGAAATCCGAAATTTTTAATAAACTACAGTAATTCAATTTTTCACTTTTATCCAATTATATTTTTATCTAGTTCAAAAAAAAGTTATCTTGCTTTATATAGGGTGATCTTCCTCATACAAGATATACTTTTGAGATGGAATAGTATGGATTTTTGAATTCTTTAAAAGTGACATCTGAAAATTTACAATCTTTCTTTTTGTCACCTAGATTTTTTTTTTGCCAAAACATCATTTTCAGCCCAGTACTGTAGATCGTACCATT</canonical>
            <polymorphic>CTAGTATTGAAACTGATTTGATAGTTCTGTGATCATTGAGATATTCATGTTCTATCAAGTGTGAGATCAGATTGAACTTTGTGTAGGAAAATGTAGATTTTGTTGCCAAATGACCTTTTAGATTAGGACACCTTTTAGTGGTGAGAATTCAATGATTTTCGATGATGAATGATTAGAAGTGCAAGGTCAGTGGTACGGTATTTGTATGATGCGGAAGTGTAAGATGCGCAACTATTTTTTACCTTTGAGCTAATTTATCTCGGTACTTTTTGAATGTACAAAAAATTTGTCAATTTTTAAATTGTTTATCATAATTTACCAGGATTTTATCAGTTGGCAAATTTTTGATATCTTACATAGAAGCCAAGAAAAATCGAACTAGTAAGGGCCCTCCTATTACAGGTTTCACGGTATTTTCCATTTTTCCGACCCAGCTCAGTTTTTAAGAAATTCTCGCTATCACCTTCATATTACCTTTTTTTTCCATCATGAATTTTTCMGAATCCTTTAGTGTAAAATTGGGGAATTCTCGTTTTTTATCATTCAAGGTTTTTTTTATGTTTCCATTACTTCGCAATTTCCAGATTTTTAGCTTATCATGTTTTGTTATCAGCTATTCCCAGATTTTTTTTAGCTTCACGAATTTCAGAAGTTTCAAGTCATTCCCCAAAAAAAAACAATCGTCCGAGAAAATTGTGATTTTTGGAAACTCCGAGAAATCTGACATATAACTTTTCTGGAAATCCGAAATTTTTAATAAACTACAGTAATTCAATTTTTCACTTTTATCCAATTATATTTTTATCTAGTTCAAAAAAAAGTTATCTTGCTTTATATAGGGTGATCTTCCTCATACAAGATATACTTTTGAGATGGAATAGTATGGATTTTTGAATTCTTTAAAAGTGACATCTGAAAATTTACAATCTTTCTTTTTGTCACCTAGATTTTTTTTTTGCCAAAACATCATTTTCAGCCCAGTACTGTAGATCGTACCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCTCGCTATCACCTTCATA</pcr_primer_p1>
		<pcr_primer_p2>TTCCAAAAATCACAATTTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>AATTCTCGCTATCACCTTCATATTACCTTTTTTTTCCATCATGAATTTTTCCGAATCCTTTAGTGTAAAATTGGGGAATTCTCGTTTTTTATCATTCAAGGTTTTTTTTATGTTTCCATTACTTCGCAATTTCCAGATTTTTAGCTTATCATGTTTTGTTATCAGCTATTCCCAGATTTTTTTTAGCTTCACGAATTTCAGAAGTTTCAAGTCATTCCCCAAAAAAAAACAATCGTCCGAGAAAATTGTGATTTTTGGAA</canonical_amplicon>
		<polymorphic_amplicon>AATTCTCGCTATCACCTTCATATTACCTTTTTTTTCCATCATGAATTTTTCMGAATCCTTTAGTGTAAAATTGGGGAATTCTCGTTTTTTATCATTCAAGGTTTTTTTTATGTTTCCATTACTTCGCAATTTCCAGATTTTTAGCTTATCATGTTTTGTTATCAGCTATTCCCAGATTTTTTTTAGCTTCACGAATTTCAGAAGTTTCAAGTCATTCCCCAAAAAAAAACAATCGTCCGAGAAAATTGTGATTTTTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19856</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>449326</contig_pos>
        <strand></strand>
        <context>TACTATTACA[C/T]CAAAAGTCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGGGATAGGAGAGAAGAGATACAAGAGAATACGATGTGTTACTATTACA</left_flank>
        <right_flank>CAAAAGTCAAAAGTTTCTGAAAATTTTAAAAGTTTTTAACTTCCCATTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGGGTTACTGTAGCCTTCATTTTCAATTTTTCAAACGTTCAAAGTTTAATTCTTGTGCTCTCTCCTCATCATTTTATGAATTCTCTTCATCGAATGGGACGTCTTCTGGACATATATTATTTTCCAAAGTTTCCCTTTCTCTTCTTTTTTTTCTCCCAACCTTTTTCCTGCTCTTTTCCCTTTCCAATCTCTCTCGTTCTTCTTCTCTTATATGGATGTTTTATGAGATTAATTCTTTTTTTGCTCCTCCTCCTCTTCCTATTTCTCTCTTCACTTTTGTCACGAAGAAGCACGTATTCATTCGGGGAGGGACCTTTTTTGTCCCAATCCGACTCTTCGTTTTCTGTTTTTATAGTTGATTTCAATGGAAAAAAAGAAGAAGAAACAGGAAAAAAAAGAGCAACGTTTTTGGGTTTGATTAGGGAAATTGGAAATTACGTCTGGAAAAAGGGATAGGAGAGAAGAGATACAAGAGAATACGATGTGTTACTATTACACCAAAAGTCAAAAGTTTCTGAAAATTTTAAAAGTTTTTAACTTCCCATTTGACATAAGCACCTTTAAGCCAAATTACCTGGGTTCTTGTTAGAGATATCAGAAATGTGAAAGCTGATAAAATGTTTACGATTTTACTATAAACAATTTTCCAGTTTGTCAGTTTTTTCTACCATTCATAGGAACCGAGATTATATACCGTAAATTCTCTAATAGATGGCCAATCCTAACTTGTAACTTTGAGCCAGTATATCTCGCTTCCTGTAAACGATATCAAAAATATGTAAATTAAAAAAATGTTTGTGATATTATAATAAACATTTTATCAGTTGATCACTTTTTATTATCTTCTATAGGAAATGAGATATATAGGGTCAAAGTTAATAGTCGCAGGAAGCCGTAACTTCGGATTTCTCAACGTCCGACGGCCGACCGTTTAGCACCTTTTGACTTTCAAAACTTGTTGGTGCCAGTGTAATCTTCAGAATTATTGAGAATAAAAC</canonical>
            <polymorphic>ATTGGGTTACTGTAGCCTTCATTTTCAATTTTTCAAACGTTCAAAGTTTAATTCTTGTGCTCTCTCCTCATCATTTTATGAATTCTCTTCATCGAATGGGACGTCTTCTGGACATATATTATTTTCCAAAGTTTCCCTTTCTCTTCTTTTTTTTCTCCCAACCTTTTTCCTGCTCTTTTCCCTTTCCAATCTCTCTCGTTCTTCTTCTCTTATATGGATGTTTTATGAGATTAATTCTTTTTTTGCTCCTCCTCCTCTTCCTATTTCTCTCTTCACTTTTGTCACGAAGAAGCACGTATTCATTCGGGGAGGGACCTTTTTTGTCCCAATCCGACTCTTCGTTTTCTGTTTTTATAGTTGATTTCAATGGAAAAAAAGAAGAAGAAACAGGAAAAAAAAGAGCAACGTTTTTGGGTTTGATTAGGGAAATTGGAAATTACGTCTGGAAAAAGGGATAGGAGAGAAGAGATACAAGAGAATACGATGTGTTACTATTACAYCAAAAGTCAAAAGTTTCTGAAAATTTTAAAAGTTTTTAACTTCCCATTTGACATAAGCACCTTTAAGCCAAATTACCTGGGTTCTTGTTAGAGATATCAGAAATGTGAAAGCTGATAAAATGTTTACGATTTTACTATAAACAATTTTCCAGTTTGTCAGTTTTTTCTACCATTCATAGGAACCGAGATTATATACCGTAAATTCTCTAATAGATGGCCAATCCTAACTTGTAACTTTGAGCCAGTATATCTCGCTTCCTGTAAACGATATCAAAAATATGTAAATTAAAAAAATGTTTGTGATATTATAATAAACATTTTATCAGTTGATCACTTTTTATTATCTTCTATAGGAAATGAGATATATAGGGTCAAAGTTAATAGTCGCAGGAAGCCGTAACTTCGGATTTCTCAACGTCCGACGGCCGACCGTTTAGCACCTTTTGACTTTCAAAACTTGTTGGTGCCAGTGTAATCTTCAGAATTATTGAGAATAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>216 195 194 106 60 59 48 31 28 27 11 10 9 6</canonical_bands>
                <polymorphic_bands>216 195 194 106 71 59 48 31 28 27 10 9 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCGTTTTCTGTTTTTATAGTTGA</pcr_primer_p1>
		<pcr_primer_p2>CTTATGTCAAATGGGAAGTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>220</pcr_amplicon_size>
		<canonical_amplicon>TTCGTTTTCTGTTTTTATAGTTGATTTCAATGGAAAAAAAGAAGAAGAAACAGGAAAAAAAAGAGCAACGTTTTTGGGTTTGATTAGGGAAATTGGAAATTACGTCTGGAAAAAGGGATAGGAGAGAAGAGATACAAGAGAATACGATGTGTTACTATTACACCAAAAGTCAAAAGTTTCTGAAAATTTTAAAAGTTTTTAACTTCCCATTTGACATAAG</canonical_amplicon>
		<polymorphic_amplicon>TTCGTTTTCTGTTTTTATAGTTGATTTCAATGGAAAAAAAGAAGAAGAAACAGGAAAAAAAAGAGCAACGTTTTTGGGTTTGATTAGGGAAATTGGAAATTACGTCTGGAAAAAGGGATAGGAGAGAAGAGATACAAGAGAATACGATGTGTTACTATTACAYCAAAAGTCAAAAGTTTCTGAAAATTTTAAAAGTTTTTAACTTCCCATTTGACATAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19857</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>453819</contig_pos>
        <strand>+</strand>
        <context>AGAAGAAGTC[C/T]GTTTCGATTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAAAAAAAATAGAAATTCGAAAATGACAAAAGATTGACGAGAAGAAGTC</left_flank>
        <right_flank>GTTTCGATTATTCATCCATGTCTTTGGGAGAAGAGGAAGAGTTCGCGAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTTTTTTACTCAAAGGAGGGAAAAAGTCCTCAAAATGATAATAATGCGTTAATTGGTATCTAATTAGTGTGTGCTCACGAAATTTCAAGTTTTCCTATGACGGCTGGGAGTCGAGATACAGGCGTTTGAAGTTTTGATCTACGTGCGGCGCGGTCGCGTTGCGGTTCTTTATCTCAAAACTTCTAACGCTCATATCTCGACTCTCCGGTTTGCTAGAGATCTAAAACATTTTTCATTATGTATTTTTTGAAATCCGCGTCACTTTCCGATATTTCAGAATATCCATTTTTTTCCATAACAAATACCCGTTTTTTGTAGATCATTGACCCAATCAACCACTACCTAATGCATTGAGTTGTCTGCTAGTTTTTTTCTGATTCTTTTTCTCTTTTTTTTCTTTCAAAATTTTAGTAAGAGAGCAAAAACAATATACATCCAACAAACCAAATAAAAAAAATAGAAATTCGAAAATGACAAAAGATTGACGAGAAGAAGTCTGTTTCGATTATTCATCCATGTCTTTGGGAGAAGAGGAAGAGTTCGCGAGATTCGACACAAAGAAAAACAATTGAGCGAGAGCAGACCACACAGAATTTGTGATTTTCTGTGGCTTTTGGTTTAGTTCTTCTGTTTTTTTTGGTTTGAAAACTAAGGATGAGTATTTGGAGTACTGTAACTTGTTGAAAGACAGTAAATACTCTATAGAAGCCCACCAGAACCGTCAATTTCGAGCTCAATTATCTCGATTCCTGTGCAAGGTATCAAAAAGTATTCAACTGATAAATTGTTTGTCACAATATCACCAATATTTTGTTAGTTGACACATTTTTGATATTTTGCAATGGAATTGAGATAACTGAGCTCAAACTTGACAGTCAGGGAGGCCCTTCTATTACAGGTTTTACGGTATATTTCATCCAAGTTTTGAGAATCTAGAAAAAATTATAATCTTGCGGATTCAAAGTATTACGAATTTGAAAATTCCTTTATTCTAAAAA</canonical>
            <polymorphic>AGTTTTTTTACTCAAAGGAGGGAAAAAGTCCTCAAAATGATAATAATGCGTTAATTGGTATCTAATTAGTGTGTGCTCACGAAATTTCAAGTTTTCCTATGACGGCTGGGAGTCGAGATACAGGCGTTTGAAGTTTTGATCTACGTGCGGCGCGGTCGCGTTGCGGTTCTTTATCTCAAAACTTCTAACGCTCATATCTCGACTCTCCGGTTTGCTAGAGATCTAAAACATTTTTCATTATGTATTTTTTGAAATCCGCGTCACTTTCCGATATTTCAGAATATCCATTTTTTTCCATAACAAATACCCGTTTTTTGTAGATCATTGACCCAATCAACCACTACCTAATGCATTGAGTTGTCTGCTAGTTTTTTTCTGATTCTTTTTCTCTTTTTTTTCTTTCAAAATTTTAGTAAGAGAGCAAAAACAATATACATCCAACAAACCAAATAAAAAAAATAGAAATTCGAAAATGACAAAAGATTGACGAGAAGAAGTCYGTTTCGATTATTCATCCATGTCTTTGGGAGAAGAGGAAGAGTTCGCGAGATTCGACACAAAGAAAAACAATTGAGCGAGAGCAGACCACACAGAATTTGTGATTTTCTGTGGCTTTTGGTTTAGTTCTTCTGTTTTTTTTGGTTTGAAAACTAAGGATGAGTATTTGGAGTACTGTAACTTGTTGAAAGACAGTAAATACTCTATAGAAGCCCACCAGAACCGTCAATTTCGAGCTCAATTATCTCGATTCCTGTGCAAGGTATCAAAAAGTATTCAACTGATAAATTGTTTGTCACAATATCACCAATATTTTGTTAGTTGACACATTTTTGATATTTTGCAATGGAATTGAGATAACTGAGCTCAAACTTGACAGTCAGGGAGGCCCTTCTATTACAGGTTTTACGGTATATTTCATCCAAGTTTTGAGAATCTAGAAAAAATTATAATCTTGCGGATTCAAAGTATTACGAATTTGAAAATTCCTTTATTCTAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAACAATATACATCCAACAA</pcr_primer_p1>
		<pcr_primer_p2>ACTCCAAATACTCATCCTTAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAAACAATATACATCCAACAAACCAAATAAAAAAAATAGAAATTCGAAAATGACAAAAGATTGACGAGAAGAAGTCTGTTTCGATTATTCATCCATGTCTTTGGGAGAAGAGGAAGAGTTCGCGAGATTCGACACAAAGAAAAACAATTGAGCGAGAGCAGACCACACAGAATTTGTGATTTTCTGTGGCTTTTGGTTTAGTTCTTCTGTTTTTTTTGGTTTGAAAACTAAGGATGAGTATTTGGAGT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAACAATATACATCCAACAAACCAAATAAAAAAAATAGAAATTCGAAAATGACAAAAGATTGACGAGAAGAAGTCYGTTTCGATTATTCATCCATGTCTTTGGGAGAAGAGGAAGAGTTCGCGAGATTCGACACAAAGAAAAACAATTGAGCGAGAGCAGACCACACAGAATTTGTGATTTTCTGTGGCTTTTGGTTTAGTTCTTCTGTTTTTTTTGGTTTGAAAACTAAGGATGAGTATTTGGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19858</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>478808</contig_pos>
        <strand>+</strand>
        <context>ATATAGACAG[A/G]CAAAAAATAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAGACAACGACAACGACAAAAACAATATCAATGTTTGACATATAGACAG</left_flank>
        <right_flank>CAAAAAATAGAGAGAGAAAGACAAATTAACCAAGAATTAACTATATATTG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCGAATCGTCCTCGCTGGAACTGCTTGATGGAGTTGAGTCCTTCTTCTCCAGAAGGAGACTGGAGATACTGTAGGTCGATGACATCTTCCGATTCTCCAGATCCTTGTCGTCCGGAGTTATGGACAATTGTGGTTGCTCCGATGGCATGACGAGACTCATTTGTGAAGAGATTAAGAGTAGGAAAATAGATCTGGAAAGAAAATTGGATTGAAAAAAAACGGTAGATGCTTGAAAAGTAGGAGAAAGAAAGCGAAATGGATCAGCATGAAGAAGAAGTGGTTGTTATGACATAAACGCCACGTCATCATCGGAAACCGAATTTAACAATTTTCTAATTTATATACAGTGTCACACTAATATGTCTCACTCTCTCTCCCTTCGCCCCGGAAAGTCGTACATTTTTAATTAAACTGATTGGATACTGAAGAAGAAGAAATACATGGAATTCAGACAACGACAACGACAAAAACAATATCAATGTTTGACATATAGACAGGCAAAAAATAGAGAGAGAAAGACAAATTAACCAAGAATTAACTATATATTGGAATCTTAGATTTGTGTATATAGACGAGGAGTTTTGATGAAAATGAGTGAGCCACTGGAAAAAACAATGCGATAAATTACCGGCTTTGACAAGAATGAAATGAGCAATTCGTATTTTGTTAGTTGATTAGGGAAAGAAAAATAAACCGAAATGAAGGATTACTTGGTATTGAAAGTGGTAATCAGAAATGGGATTACTGTAGACGGAGTAGTTCACAAACAGCGGAAAATATTCTAAAAACTTAAATGGGGGACACAGTTTTTTAGAAATTCCGTTCGTATAAGCCCCTCGAGGAGTTAAACTGGCGGGCCCATTGTTGGAGGTTGCAAATAGCATTTTTTCAGACTTTCCTAGATAGCGGGAGCAGTTTTTAGGATATTATTGCAAAAATTGTCGAACAGATCTAATTTGTGAACCCAAATCCGATTTTGAAAAAGCTAGATTGGTAAC</canonical>
            <polymorphic>GCTCGAATCGTCCTCGCTGGAACTGCTTGATGGAGTTGAGTCCTTCTTCTCCAGAAGGAGACTGGAGATACTGTAGGTCGATGACATCTTCCGATTCTCCAGATCCTTGTCGTCCGGAGTTATGGACAATTGTGGTTGCTCCGATGGCATGACGAGACTCATTTGTGAAGAGATTAAGAGTAGGAAAATAGATCTGGAAAGAAAATTGGATTGAAAAAAAACGGTAGATGCTTGAAAAGTAGGAGAAAGAAAGCGAAATGGATCAGCATGAAGAAGAAGTGGTTGTTATGACATAAACGCCACGTCATCATCGGAAACCGAATTTAACAATTTTCTAATTTATATACAGTGTCACACTAATATGTCTCACTCTCTCTCCCTTCGCCCCGGAAAGTCGTACATTTTTAATTAAACTGATTGGATACTGAAGAAGAAGAAATACATGGAATTCAGACAACGACAACGACAAAAACAATATCAATGTTTGACATATAGACAGRCAAAAAATAGAGAGAGAAAGACAAATTAACCAAGAATTAACTATATATTGGAATCTTAGATTTGTGTATATAGACGAGGAGTTTTGATGAAAATGAGTGAGCCACTGGAAAAAACAATGCGATAAATTACCGGCTTTGACAAGAATGAAATGAGCAATTCGTATTTTGTTAGTTGATTAGGGAAAGAAAAATAAACCGAAATGAAGGATTACTTGGTATTGAAAGTGGTAATCAGAAATGGGATTACTGTAGACGGAGTAGTTCACAAACAGCGGAAAATATTCTAAAAACTTAAATGGGGGACACAGTTTTTTAGAAATTCCGTTCGTATAAGCCCCTCGAGGAGTTAAACTGGCGGGCCCATTGTTGGAGGTTGCAAATAGCATTTTTTCAGACTTTCCTAGATAGCGGGAGCAGTTTTTAGGATATTATTGCAAAAATTGTCGAACAGATCTAATTTGTGAACCCAAATCCGATTTTGAAAAAGCTAGATTGGTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGATTGGATACTGAAGAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TACGAATTGCTCATTTCATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGATTGGATACTGAAGAAGAAGAAATACATGGAATTCAGACAACGACAACGACAAAAACAATATCAATGTTTGACATATAGACAGGCAAAAAATAGAGAGAGAAAGACAAATTAACCAAGAATTAACTATATATTGGAATCTTAGATTTGTGTATATAGACGAGGAGTTTTGATGAAAATGAGTGAGCCACTGGAAAAAACAATGCGATAAATTACCGGCTTTGACAAGAATGAAATGAGCAATTCGTA</canonical_amplicon>
		<polymorphic_amplicon>CTGATTGGATACTGAAGAAGAAGAAATACATGGAATTCAGACAACGACAACGACAAAAACAATATCAATGTTTGACATATAGACAGRCAAAAAATAGAGAGAGAAAGACAAATTAACCAAGAATTAACTATATATTGGAATCTTAGATTTGTGTATATAGACGAGGAGTTTTGATGAAAATGAGTGAGCCACTGGAAAAAACAATGCGATAAATTACCGGCTTTGACAAGAATGAAATGAGCAATTCGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19859</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>478761</contig_pos>
        <strand>+</strand>
        <context>ATGGAATTCA[A/G]ACAACGACAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTAATTAAACTGATTGGATACTGAAGAAGAAGAAATACATGGAATTCA</left_flank>
        <right_flank>ACAACGACAACGACAAAAACAATATCAATGTTTGACATATAGACAGGCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGCCGCGGTGTCGGCTGATGGACTTCGTGGATCCTCGTCGTTGCTGCTCGAATCGTCCTCGCTGGAACTGCTTGATGGAGTTGAGTCCTTCTTCTCCAGAAGGAGACTGGAGATACTGTAGGTCGATGACATCTTCCGATTCTCCAGATCCTTGTCGTCCGGAGTTATGGACAATTGTGGTTGCTCCGATGGCATGACGAGACTCATTTGTGAAGAGATTAAGAGTAGGAAAATAGATCTGGAAAGAAAATTGGATTGAAAAAAAACGGTAGATGCTTGAAAAGTAGGAGAAAGAAAGCGAAATGGATCAGCATGAAGAAGAAGTGGTTGTTATGACATAAACGCCACGTCATCATCGGAAACCGAATTTAACAATTTTCTAATTTATATACAGTGTCACACTAATATGTCTCACTCTCTCTCCCTTCGCCCCGGAAAGTCGTACATTTTTAATTAAACTGATTGGATACTGAAGAAGAAGAAATACATGGAATTCAGACAACGACAACGACAAAAACAATATCAATGTTTGACATATAGACAGGCAAAAAATAGAGAGAGAAAGACAAATTAACCAAGAATTAACTATATATTGGAATCTTAGATTTGTGTATATAGACGAGGAGTTTTGATGAAAATGAGTGAGCCACTGGAAAAAACAATGCGATAAATTACCGGCTTTGACAAGAATGAAATGAGCAATTCGTATTTTGTTAGTTGATTAGGGAAAGAAAAATAAACCGAAATGAAGGATTACTTGGTATTGAAAGTGGTAATCAGAAATGGGATTACTGTAGACGGAGTAGTTCACAAACAGCGGAAAATATTCTAAAAACTTAAATGGGGGACACAGTTTTTTAGAAATTCCGTTCGTATAAGCCCCTCGAGGAGTTAAACTGGCGGGCCCATTGTTGGAGGTTGCAAATAGCATTTTTTCAGACTTTCCTAGATAGCGGGAGCAGTTTTTAGGATATTATTGCAAAAATTGTCGAACAGAT</canonical>
            <polymorphic>GAAGCCGCGGTGTCGGCTGATGGACTTCGTGGATCCTCGTCGTTGCTGCTCGAATCGTCCTCGCTGGAACTGCTTGATGGAGTTGAGTCCTTCTTCTCCAGAAGGAGACTGGAGATACTGTAGGTCGATGACATCTTCCGATTCTCCAGATCCTTGTCGTCCGGAGTTATGGACAATTGTGGTTGCTCCGATGGCATGACGAGACTCATTTGTGAAGAGATTAAGAGTAGGAAAATAGATCTGGAAAGAAAATTGGATTGAAAAAAAACGGTAGATGCTTGAAAAGTAGGAGAAAGAAAGCGAAATGGATCAGCATGAAGAAGAAGTGGTTGTTATGACATAAACGCCACGTCATCATCGGAAACCGAATTTAACAATTTTCTAATTTATATACAGTGTCACACTAATATGTCTCACTCTCTCTCCCTTCGCCCCGGAAAGTCGTACATTTTTAATTAAACTGATTGGATACTGAAGAAGAAGAAATACATGGAATTCARACAACGACAACGACAAAAACAATATCAATGTTTGACATATAGACAGGCAAAAAATAGAGAGAGAAAGACAAATTAACCAAGAATTAACTATATATTGGAATCTTAGATTTGTGTATATAGACGAGGAGTTTTGATGAAAATGAGTGAGCCACTGGAAAAAACAATGCGATAAATTACCGGCTTTGACAAGAATGAAATGAGCAATTCGTATTTTGTTAGTTGATTAGGGAAAGAAAAATAAACCGAAATGAAGGATTACTTGGTATTGAAAGTGGTAATCAGAAATGGGATTACTGTAGACGGAGTAGTTCACAAACAGCGGAAAATATTCTAAAAACTTAAATGGGGGACACAGTTTTTTAGAAATTCCGTTCGTATAAGCCCCTCGAGGAGTTAAACTGGCGGGCCCATTGTTGGAGGTTGCAAATAGCATTTTTTCAGACTTTCCTAGATAGCGGGAGCAGTTTTTAGGATATTATTGCAAAAATTGTCGAACAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>282 171 159 139 139 60 50</canonical_bands>
                <polymorphic_bands>421 171 159 139 60 50</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGAAAGTCGTACATTTTTAAT</pcr_primer_p1>
		<pcr_primer_p2>GGTAATTTATCGCATTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CGGAAAGTCGTACATTTTTAATTAAACTGATTGGATACTGAAGAAGAAGAAATACATGGAATTCAGACAACGACAACGACAAAAACAATATCAATGTTTGACATATAGACAGGCAAAAAATAGAGAGAGAAAGACAAATTAACCAAGAATTAACTATATATTGGAATCTTAGATTTGTGTATATAGACGAGGAGTTTTGATGAAAATGAGTGAGCCACTGGAAAAAACAATGCGATAAATTACC</canonical_amplicon>
		<polymorphic_amplicon>CGGAAAGTCGTACATTTTTAATTAAACTGATTGGATACTGAAGAAGAAGAAATACATGGAATTCARACAACGACAACGACAAAAACAATATCAATGTTTGACATATAGACAGGCAAAAAATAGAGAGAGAAAGACAAATTAACCAAGAATTAACTATATATTGGAATCTTAGATTTGTGTATATAGACGAGGAGTTTTGATGAAAATGAGTGAGCCACTGGAAAAAACAATGCGATAAATTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19860</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>478617</contig_pos>
        <strand>+</strand>
        <context>GCCACGTCAT[C/G]ATCGGAAACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGGATCAGCATGAAGAAGAAGTGGTTGTTATGACATAAACGCCACGTCAT</left_flank>
        <right_flank>ATCGGAAACCGAATTTAACAATTTTCTAATTTATATACAGTGTCACACTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCCTAGGACCCAGACGGTTACCTGAATGCTCGGATCAATCGTTCCATTTCCATTTCCCATGAGCTGAGCCATTATTTGGTTTGGTGACGTGGCATTCTCCGAACTAGACGATGAAGACGAAGTCGGTGCAAACATGAATGAAGAAGCCGCGGTGTCGGCTGATGGACTTCGTGGATCCTCGTCGTTGCTGCTCGAATCGTCCTCGCTGGAACTGCTTGATGGAGTTGAGTCCTTCTTCTCCAGAAGGAGACTGGAGATACTGTAGGTCGATGACATCTTCCGATTCTCCAGATCCTTGTCGTCCGGAGTTATGGACAATTGTGGTTGCTCCGATGGCATGACGAGACTCATTTGTGAAGAGATTAAGAGTAGGAAAATAGATCTGGAAAGAAAATTGGATTGAAAAAAAACGGTAGATGCTTGAAAAGTAGGAGAAAGAAAGCGAAATGGATCAGCATGAAGAAGAAGTGGTTGTTATGACATAAACGCCACGTCATCATCGGAAACCGAATTTAACAATTTTCTAATTTATATACAGTGTCACACTAATATGTCTCACTCTCTCTCCCTTCGCCCCGGAAAGTCGTACATTTTTAATTAAACTGATTGGATACTGAAGAAGAAGAAATACATGGAATTCAGACAACGACAACGACAAAAACAATATCAATGTTTGACATATAGACAGGCAAAAAATAGAGAGAGAAAGACAAATTAACCAAGAATTAACTATATATTGGAATCTTAGATTTGTGTATATAGACGAGGAGTTTTGATGAAAATGAGTGAGCCACTGGAAAAAACAATGCGATAAATTACCGGCTTTGACAAGAATGAAATGAGCAATTCGTATTTTGTTAGTTGATTAGGGAAAGAAAAATAAACCGAAATGAAGGATTACTTGGTATTGAAAGTGGTAATCAGAAATGGGATTACTGTAGACGGAGTAGTTCACAAACAGCGGAAAATATTCTAAAAACTTAAATGGGGGACACAGT</canonical>
            <polymorphic>TTCCCTAGGACCCAGACGGTTACCTGAATGCTCGGATCAATCGTTCCATTTCCATTTCCCATGAGCTGAGCCATTATTTGGTTTGGTGACGTGGCATTCTCCGAACTAGACGATGAAGACGAAGTCGGTGCAAACATGAATGAAGAAGCCGCGGTGTCGGCTGATGGACTTCGTGGATCCTCGTCGTTGCTGCTCGAATCGTCCTCGCTGGAACTGCTTGATGGAGTTGAGTCCTTCTTCTCCAGAAGGAGACTGGAGATACTGTAGGTCGATGACATCTTCCGATTCTCCAGATCCTTGTCGTCCGGAGTTATGGACAATTGTGGTTGCTCCGATGGCATGACGAGACTCATTTGTGAAGAGATTAAGAGTAGGAAAATAGATCTGGAAAGAAAATTGGATTGAAAAAAAACGGTAGATGCTTGAAAAGTAGGAGAAAGAAAGCGAAATGGATCAGCATGAAGAAGAAGTGGTTGTTATGACATAAACGCCACGTCATSATCGGAAACCGAATTTAACAATTTTCTAATTTATATACAGTGTCACACTAATATGTCTCACTCTCTCTCCCTTCGCCCCGGAAAGTCGTACATTTTTAATTAAACTGATTGGATACTGAAGAAGAAGAAATACATGGAATTCAGACAACGACAACGACAAAAACAATATCAATGTTTGACATATAGACAGGCAAAAAATAGAGAGAGAAAGACAAATTAACCAAGAATTAACTATATATTGGAATCTTAGATTTGTGTATATAGACGAGGAGTTTTGATGAAAATGAGTGAGCCACTGGAAAAAACAATGCGATAAATTACCGGCTTTGACAAGAATGAAATGAGCAATTCGTATTTTGTTAGTTGATTAGGGAAAGAAAAATAAACCGAAATGAAGGATTACTTGGTATTGAAAGTGGTAATCAGAAATGGGATTACTGTAGACGGAGTAGTTCACAAACAGCGGAAAATATTCTAAAAACTTAAATGGGGGACACAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATAGATCTGGAAAGAAAATTG</pcr_primer_p1>
		<pcr_primer_p2>TCTTCTTCAGTATCCAATCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATAGATCTGGAAAGAAAATTGGATTGAAAAAAAACGGTAGATGCTTGAAAAGTAGGAGAAAGAAAGCGAAATGGATCAGCATGAAGAAGAAGTGGTTGTTATGACATAAACGCCACGTCATCATCGGAAACCGAATTTAACAATTTTCTAATTTATATACAGTGTCACACTAATATGTCTCACTCTCTCTCCCTTCGCCCCGGAAAGTCGTACATTTTTAATTAAACTGATTGGATACTGAAGAAGA</canonical_amplicon>
		<polymorphic_amplicon>AAAATAGATCTGGAAAGAAAATTGGATTGAAAAAAAACGGTAGATGCTTGAAAAGTAGGAGAAAGAAAGCGAAATGGATCAGCATGAAGAAGAAGTGGTTGTTATGACATAAACGCCACGTCATSATCGGAAACCGAATTTAACAATTTTCTAATTTATATACAGTGTCACACTAATATGTCTCACTCTCTCTCCCTTCGCCCCGGAAAGTCGTACATTTTTAATTAAACTGATTGGATACTGAAGAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19862</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>478518</contig_pos>
        <strand>+</strand>
        <context>AGAAAATTGG[A/T]TTGKAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATTTGTGAAGAGATTAAGAGTAGGAAAATAGATCTGGAAAGAAAATTGG</left_flank>
        <right_flank>TTGAAAAAAAACGGTAGATGCTTGAAAAGTAGGAGAAAGAAAGCGAAATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAAGAAGAAGTAGGCCTGGAAATTTGGAATTTTTTCTGAAAATGTTTGCCGCGCTTCTTTTCAAGCAGCTGTCTGGTGCGCCTTCGGCGCAAAAAATATTCCCTAGGACCCAGACGGTTACCTGAATGCTCGGATCAATCGTTCCATTTCCATTTCCCATGAGCTGAGCCATTATTTGGTTTGGTGACGTGGCATTCTCCGAACTAGACGATGAAGACGAAGTCGGTGCAAACATGAATGAAGAAGCCGCGGTGTCGGCTGATGGACTTCGTGGATCCTCGTCGTTGCTGCTCGAATCGTCCTCGCTGGAACTGCTTGATGGAGTTGAGTCCTTCTTCTCCAGAAGGAGACTGGAGATACTGTAGGTCGATGACATCTTCCGATTCTCCAGATCCTTGTCGTCCGGAGTTATGGACAATTGTGGTTGCTCCGATGGCATGACGAGACTCATTTGTGAAGAGATTAAGAGTAGGAAAATAGATCTGGAAAGAAAATTGGATTGAAAAAAAACGGTAGATGCTTGAAAAGTAGGAGAAAGAAAGCGAAATGGATCAGCATGAAGAAGAAGTGGTTGTTATGACATAAACGCCACGTCATCATCGGAAACCGAATTTAACAATTTTCTAATTTATATACAGTGTCACACTAATATGTCTCACTCTCTCTCCCTTCGCCCCGGAAAGTCGTACATTTTTAATTAAACTGATTGGATACTGAAGAAGAAGAAATACATGGAATTCAGACAACGACAACGACAAAAACAATATCAATGTTTGACATATAGACAGGCAAAAAATAGAGAGAGAAAGACAAATTAACCAAGAATTAACTATATATTGGAATCTTAGATTTGTGTATATAGACGAGGAGTTTTGATGAAAATGAGTGAGCCACTGGAAAAAACAATGCGATAAATTACCGGCTTTGACAAGAATGAAATGAGCAATTCGTATTTTGTTAGTTGATTAGGGAAAGAAAAATAAACCGAAATGAAGGATT</canonical>
            <polymorphic>GCAAGAAGAAGTAGGCCTGGAAATTTGGAATTTTTTCTGAAAATGTTTGCCGCGCTTCTTTTCAAGCAGCTGTCTGGTGCGCCTTCGGCGCAAAAAATATTCCCTAGGACCCAGACGGTTACCTGAATGCTCGGATCAATCGTTCCATTTCCATTTCCCATGAGCTGAGCCATTATTTGGTTTGGTGACGTGGCATTCTCCGAACTAGACGATGAAGACGAAGTCGGTGCAAACATGAATGAAGAAGCCGCGGTGTCGGCTGATGGACTTCGTGGATCCTCGTCGTTGCTGCTCGAATCGTCCTCGCTGGAACTGCTTGATGGAGTTGAGTCCTTCTTCTCCAGAAGGAGACTGGAGATACTGTAGGTCGATGACATCTTCCGATTCTCCAGATCCTTGTCGTCCGGAGTTATGGACAATTGTGGTTGCTCCGATGGCATGACGAGACTCATTTGTGAAGAGATTAAGAGTAGGAAAATAGATCTGGAAAGAAAATTGGWTTGAAAAAAAACGGTAGATGCTTGAAAAGTAGGAGAAAGAAAGCGAAATGGATCAGCATGAAGAAGAAGTGGTTGTTATGACATAAACGCCACGTCATCATCGGAAACCGAATTTAACAATTTTCTAATTTATATACAGTGTCACACTAATATGTCTCACTCTCTCTCCCTTCGCCCCGGAAAGTCGTACATTTTTAATTAAACTGATTGGATACTGAAGAAGAAGAAATACATGGAATTCAGACAACGACAACGACAAAAACAATATCAATGTTTGACATATAGACAGGCAAAAAATAGAGAGAGAAAGACAAATTAACCAAGAATTAACTATATATTGGAATCTTAGATTTGTGTATATAGACGAGGAGTTTTGATGAAAATGAGTGAGCCACTGGAAAAAACAATGCGATAAATTACCGGCTTTGACAAGAATGAAATGAGCAATTCGTATTTTGTTAGTTGATTAGGGAAAGAAAAATAAACCGAAATGAAGGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAGACTGGAGATACTGTAGGT</pcr_primer_p1>
		<pcr_primer_p2>TGTCATAACAACCACTTCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AGGAGACTGGAGATACTGTAGGTCGATGACATCTTCCGATTCTCCAGATCCTTGTCGTCCGGAGTTATGGACAATTGTGGTTGCTCCGATGGCATGACGAGACTCATTTGTGAAGAGATTAAGAGTAGGAAAATAGATCTGGAAAGAAAATTGGATTGAAAAAAAACGGTAGATGCTTGAAAAGTAGGAGAAAGAAAGCGAAATGGATCAGCATGAAGAAGAAGTGGTTGTTATGACA</canonical_amplicon>
		<polymorphic_amplicon>AGGAGACTGGAGATACTGTAGGTCGATGACATCTTCCGATTCTCCAGATCCTTGTCGTCCGGAGTTATGGACAATTGTGGTTGCTCCGATGGCATGACGAGACTCATTTGTGAAGAGATTAAGAGTAGGAAAATAGATCTGGAAAGAAAATTGGWTTGAAAAAAAACGGTAGATGCTTGAAAAGTAGGAGAAAGAAAGCGAAATGGATCAGCATGAAGAAGAAGTGGTTGTTATGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19883</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>496918</contig_pos>
        <strand>+</strand>
        <context>TTGAATGCGG[A/G]TCGAAATTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAGAGGATCAGATTTATAGTTTTAGGGCTTCCGGTGGTTTGAATGCGG</left_flank>
        <right_flank>TCGAAATTTGAATAGGAGGGATTTGCAAACACGAAAAAATGGTTTTAGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTAGAATGCCACCCAAGCCGTCAACTTTGAGCTCATATATCTCATTCCTCGTGAGAGATATCAAAAAGTGGTCAACTGACAAAATATTTTTTTAAAATTATGATTTACATTTTATCAATTGATCACTTTTTTTAAAATATATTTCATAGAGACTGGGATAATTGAGCTCCAAGTGCAAGCATAAGGTTGACTTCTATTATTTCAGAGATTTTACGATCTTTAATTTATTGCTCACCGAAGTTTTCCAACCCTTTTCCGTTAATTCATCAATTCCTTCAGAGCTAATAAACTTTTTAATTGTGATTTTTAAAGTTCGAAATTCCTTCTGCTCTCTCTATTGTGTACCATATGGCTTTATATGAGTTGGCATGGGGTGCAAATGAAGAAACTTTTATTACTAACCATCCGGTAGGCCACTTTGAGTAATAAAATTAGTTGAGATGCCAGGAAAGAGGATCAGATTTATAGTTTTAGGGCTTCCGGTGGTTTGAATGCGGATCGAAATTTGAATAGGAGGGATTTGCAAACACGAAAAAATGGTTTTAGTTTTAATAATCAGCTAATCAGATCATCAATGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTATCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGAGTTTCGAAATTTCTGAACAGTTTTTTTTTTTGAAATTTCTGAAATGAATGGAATTGATAAATTTTTACAAGTTCGAGAATTCTATTCGGTCGAATATGCGAAATTCTGCCAGAACACCTAAATCTTGGTTTCTTTGAACGCAACCAATCATT</canonical>
            <polymorphic>TTGTAGAATGCCACCCAAGCCGTCAACTTTGAGCTCATATATCTCATTCCTCGTGAGAGATATCAAAAAGTGGTCAACTGACAAAATATTTTTTTAAAATTATGATTTACATTTTATCAATTGATCACTTTTTTTAAAATATATTTCATAGAGACTGGGATAATTGAGCTCCAAGTGCAAGCATAAGGTTGACTTCTATTATTTCAGAGATTTTACGATCTTTAATTTATTGCTCACCGAAGTTTTCCAACCCTTTTCCGTTAATTCATCAATTCCTTCAGAGCTAATAAACTTTTTAATTGTGATTTTTAAAGTTCGAAATTCCTTCTGCTCTCTCTATTGTGTACCATATGGCTTTATATGAGTTGGCATGGGGTGCAAATGAAGAAACTTTTATTACTAACCATCCGGTAGGCCACTTTGAGTAATAAAATTAGTTGAGATGCCAGGAAAGAGGATCAGATTTATAGTTTTAGGGCTTCCGGTGGTTTGAATGCGGRTCGAAATTTGAATAGGAGGGATTTGCAAACACGAAAAAATGGTTTTAGTTTTAATAATCAGCTAATCAGATCATCAATGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTATCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGAGTTTCGAAATTTCTGAACAGTTTTTTTTTTTGAAATTTCTGAAATGAATGGAATTGATAAATTTTTACAAGTTCGAGAATTCTATTCGGTCGAATATGCGAAATTCTGCCAGAACACCTAAATCTTGGTTTCTTTGAACGCAACCAATCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>432 240 122 94 70 42</canonical_bands>
                <polymorphic_bands>432 240 122 112 94</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTGCTCTCTCTATTGTGTACC</pcr_primer_p1>
		<pcr_primer_p2>GATGATCTGATTAGCTGATTATTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTGCTCTCTCTATTGTGTACCATATGGCTTTATATGAGTTGGCATGGGGTGCAAATGAAGAAACTTTTATTACTAACCATCCGGTAGGCCACTTTGAGTAATAAAATTAGTTGAGATGCCAGGAAAGAGGATCAGATTTATAGTTTTAGGGCTTCCGGTGGTTTGAATGCGGATCGAAATTTGAATAGGAGGGATTTGCAAACACGAAAAAATGGTTTTAGTTTTAATAATCAGCTAATCAGATCATC</canonical_amplicon>
		<polymorphic_amplicon>TTCTGCTCTCTCTATTGTGTACCATATGGCTTTATATGAGTTGGCATGGGGTGCAAATGAAGAAACTTTTATTACTAACCATCCGGTAGGCCACTTTGAGTAATAAAATTAGTTGAGATGCCAGGAAAGAGGATCAGATTTATAGTTTTAGGGCTTCCGGTGGTTTGAATGCGGRTCGAAATTTGAATAGGAGGGATTTGCAAACACGAAAAAATGGTTTTAGTTTTAATAATCAGCTAATCAGATCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19884</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>496959</contig_pos>
        <strand>+</strand>
        <context>ACGAAAAAAT[G/T]GTTTTAGTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAATGCGGATCGAAATTTGAATAGGAGGGATTTGCAAACACGAAAAAAT</left_flank>
        <right_flank>GTTTTAGTTTTAATAATCAGCTAATCAGATCATCAATGCTTACGGCATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCATTCCTCGTGAGAGATATCAAAAAGTGGTCAACTGACAAAATATTTTTTTAAAATTATGATTTACATTTTATCAATTGATCACTTTTTTTAAAATATATTTCATAGAGACTGGGATAATTGAGCTCCAAGTGCAAGCATAAGGTTGACTTCTATTATTTCAGAGATTTTACGATCTTTAATTTATTGCTCACCGAAGTTTTCCAACCCTTTTCCGTTAATTCATCAATTCCTTCAGAGCTAATAAACTTTTTAATTGTGATTTTTAAAGTTCGAAATTCCTTCTGCTCTCTCTATTGTGTACCATATGGCTTTATATGAGTTGGCATGGGGTGCAAATGAAGAAACTTTTATTACTAACCATCCGGTAGGCCACTTTGAGTAATAAAATTAGTTGAGATGCCAGGAAAGAGGATCAGATTTATAGTTTTAGGGCTTCCGGTGGTTTGAATGCGGATCGAAATTTGAATAGGAGGGATTTGCAAACACGAAAAAATGGTTTTAGTTTTAATAATCAGCTAATCAGATCATCAATGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTATCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGAGTTTCGAAATTTCTGAACAGTTTTTTTTTTTGAAATTTCTGAAATGAATGGAATTGATAAATTTTTACAAGTTCGAGAATTCTATTCGGTCGAATATGCGAAATTCTGCCAGAACACCTAAATCTTGGTTTCTTTGAACGCAACCAATCATTTTTATGGACACCTTTTCTTTTCGAAAAGTAGAAGGTCAAAA</canonical>
            <polymorphic>TCTCATTCCTCGTGAGAGATATCAAAAAGTGGTCAACTGACAAAATATTTTTTTAAAATTATGATTTACATTTTATCAATTGATCACTTTTTTTAAAATATATTTCATAGAGACTGGGATAATTGAGCTCCAAGTGCAAGCATAAGGTTGACTTCTATTATTTCAGAGATTTTACGATCTTTAATTTATTGCTCACCGAAGTTTTCCAACCCTTTTCCGTTAATTCATCAATTCCTTCAGAGCTAATAAACTTTTTAATTGTGATTTTTAAAGTTCGAAATTCCTTCTGCTCTCTCTATTGTGTACCATATGGCTTTATATGAGTTGGCATGGGGTGCAAATGAAGAAACTTTTATTACTAACCATCCGGTAGGCCACTTTGAGTAATAAAATTAGTTGAGATGCCAGGAAAGAGGATCAGATTTATAGTTTTAGGGCTTCCGGTGGTTTGAATGCGGATCGAAATTTGAATAGGAGGGATTTGCAAACACGAAAAAATKGTTTTAGTTTTAATAATCAGCTAATCAGATCATCAATGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTATCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGAGTTTCGAAATTTCTGAACAGTTTTTTTTTTTGAAATTTCTGAAATGAATGGAATTGATAAATTTTTACAAGTTCGAGAATTCTATTCGGTCGAATATGCGAAATTCTGCCAGAACACCTAAATCTTGGTTTCTTTGAACGCAACCAATCATTTTTATGGACACCTTTTCTTTTCGAAAAGTAGAAGGTCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAGGATCAGATTTATAGTTTTAGG</pcr_primer_p1>
		<pcr_primer_p2>TCAATTTTGTTAGTTTTGAAGTCT</pcr_primer_p2>
		<pcr_amplicon_size>397</pcr_amplicon_size>
		<canonical_amplicon>AAGAGGATCAGATTTATAGTTTTAGGGCTTCCGGTGGTTTGAATGCGGATCGAAATTTGAATAGGAGGGATTTGCAAACACGAAAAAATGGTTTTAGTTTTAATAATCAGCTAATCAGATCATCAATGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTATCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGA</canonical_amplicon>
		<polymorphic_amplicon>AAGAGGATCAGATTTATAGTTTTAGGGCTTCCGGTGGTTTGAATGCGGATCGAAATTTGAATAGGAGGGATTTGCAAACACGAAAAAATKGTTTTAGTTTTAATAATCAGCTAATCAGATCATCAATGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTATCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19885</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>497005</contig_pos>
        <strand>+</strand>
        <context>ATGCTTACGG[C/T]ATTTcctcta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATGGTTTTAGTTTTAATAATCAGCTAATCAGATCATCAATGCTTACGG</left_flank>
        <right_flank>ATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTTAAAATTATGATTTACATTTTATCAATTGATCACTTTTTTTAAAATATATTTCATAGAGACTGGGATAATTGAGCTCCAAGTGCAAGCATAAGGTTGACTTCTATTATTTCAGAGATTTTACGATCTTTAATTTATTGCTCACCGAAGTTTTCCAACCCTTTTCCGTTAATTCATCAATTCCTTCAGAGCTAATAAACTTTTTAATTGTGATTTTTAAAGTTCGAAATTCCTTCTGCTCTCTCTATTGTGTACCATATGGCTTTATATGAGTTGGCATGGGGTGCAAATGAAGAAACTTTTATTACTAACCATCCGGTAGGCCACTTTGAGTAATAAAATTAGTTGAGATGCCAGGAAAGAGGATCAGATTTATAGTTTTAGGGCTTCCGGTGGTTTGAATGCGGATCGAAATTTGAATAGGAGGGATTTGCAAACACGAAAAAATGGTTTTAGTTTTAATAATCAGCTAATCAGATCATCAATGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTATCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGAGTTTCGAAATTTCTGAACAGTTTTTTTTTTTGAAATTTCTGAAATGAATGGAATTGATAAATTTTTACAAGTTCGAGAATTCTATTCGGTCGAATATGCGAAATTCTGCCAGAACACCTAAATCTTGGTTTCTTTGAACGCAACCAATCATTTTTATGGACACCTTTTCTTTTCGAAAAGTAGAAGGTCAAAATGTCGAAATTGGATGAGACAGGTGTCTCCAGAATGAGCACCTTCTT</canonical>
            <polymorphic>ATTTTTTTAAAATTATGATTTACATTTTATCAATTGATCACTTTTTTTAAAATATATTTCATAGAGACTGGGATAATTGAGCTCCAAGTGCAAGCATAAGGTTGACTTCTATTATTTCAGAGATTTTACGATCTTTAATTTATTGCTCACCGAAGTTTTCCAACCCTTTTCCGTTAATTCATCAATTCCTTCAGAGCTAATAAACTTTTTAATTGTGATTTTTAAAGTTCGAAATTCCTTCTGCTCTCTCTATTGTGTACCATATGGCTTTATATGAGTTGGCATGGGGTGCAAATGAAGAAACTTTTATTACTAACCATCCGGTAGGCCACTTTGAGTAATAAAATTAGTTGAGATGCCAGGAAAGAGGATCAGATTTATAGTTTTAGGGCTTCCGGTGGTTTGAATGCGGATCGAAATTTGAATAGGAGGGATTTGCAAACACGAAAAAATGGTTTTAGTTTTAATAATCAGCTAATCAGATCATCAATGCTTACGGYATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTATCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGAGTTTCGAAATTTCTGAACAGTTTTTTTTTTTGAAATTTCTGAAATGAATGGAATTGATAAATTTTTACAAGTTCGAGAATTCTATTCGGTCGAATATGCGAAATTCTGCCAGAACACCTAAATCTTGGTTTCTTTGAACGCAACCAATCATTTTTATGGACACCTTTTCTTTTCGAAAAGTAGAAGGTCAAAATGTCGAAATTGGATGAGACAGGTGTCTCCAGAATGAGCACCTTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATTTGAATAGGAGGGATTT</pcr_primer_p1>
		<pcr_primer_p2>TCAATTTTGTTAGTTTTGAAGTCT</pcr_primer_p2>
		<pcr_amplicon_size>346</pcr_amplicon_size>
		<canonical_amplicon>GAAATTTGAATAGGAGGGATTTGCAAACACGAAAAAATGGTTTTAGTTTTAATAATCAGCTAATCAGATCATCAATGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTATCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGA</canonical_amplicon>
		<polymorphic_amplicon>GAAATTTGAATAGGAGGGATTTGCAAACACGAAAAAATGGTTTTAGTTTTAATAATCAGCTAATCAGATCATCAATGCTTACGGYATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTATCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19886</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>500833</contig_pos>
        <strand>+</strand>
        <context>ATGCTCTTCG[C/T]ACAGCAAACG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCTCGAACGATCACAACCGACTCGTTCTCCTGTACCACATGCTCTTCG</left_flank>
        <right_flank>ACAGCAAACGACGAACGTAACGGCCGATCCAGCGGTCCTGAAAATTCGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGAGAACCAGTCCTAAGAACGGAGGAGTTTAATTGAAATGAGTCTTCGTTTTTCTTTTCCGTAGAAGAAGGAACAGTAATCATTTATATAAAGAGAGAAGGCGATGGGTTTTGTGACCTTCCTGGACAGAGATGGTGTAATTGACTATTGTTTTCATTGGATTTGATTGATTTCAATTTCGGATTGAGATGAGAAACGAAATGAAATGAAATGAACCTAGCAAAAAAAAAAACTAATTGTAAACTAGAAAATTAATTGAAAGTTTGTGAAAAGAAGAGGATTCGAATTCAAAAAAGACAATTGCACAGGGAGAATTCATTTAATTGATCATATATGCTTGAATAAATATACCCGGATACAGTAACAAATATGATAAATTATGGTTTTTTTCTCAATAGCAATCTTTAATCTCGTCGTCGTTTCCATGGACACTCAACGATGCCAGCATTTCTCGAACGATCACAACCGACTCGTTCTCCTGTACCACATGCTCTTCGTACAGCAAACGACGAACGTAACGGCCGATCCAGCGGTCCTGAAAATTCGAAATGTTTATTCATGTTGTGGTTTTTGAAGGGGGGACTCCGACCAAAATTTTTTATTTCATTAAAATGTGCTGAAAATTATCTATTTTCTTAATATAGCGAAACAATTCAAAAAATCCGACATTCTTGAAGAACGCCGTTGAAAACAGGAAAAAAGTTTAAAAAACGGTGCATGAGAGGAACGATGATTTGCAGTAAGAAACCTAGGCCACGGCGTCTGACAGACATTTTTTCAAGCGGCTCCGCTGGCGTGGCCTAGATTTCTCACTGCAAATCCTCGTCTCTTCAGGGCACTTTACAAAAAATGCCTATTTTCCACGGCGTTTTTCAGGGATTTCAGATTTTTGCAAAATTTTTAGACCTTTTTAGGTTTTTCAGCTGTTTTTAAATTCTTTTCTCGATTCTTCTTTTTTCGATTCTTTTGAATTTTTTGTCTGAAATTTGGCAGGAGGG</canonical>
            <polymorphic>AAAGAGAACCAGTCCTAAGAACGGAGGAGTTTAATTGAAATGAGTCTTCGTTTTTCTTTTCCGTAGAAGAAGGAACAGTAATCATTTATATAAAGAGAGAAGGCGATGGGTTTTGTGACCTTCCTGGACAGAGATGGTGTAATTGACTATTGTTTTCATTGGATTTGATTGATTTCAATTTCGGATTGAGATGAGAAACGAAATGAAATGAAATGAACCTAGCAAAAAAAAAAACTAATTGTAAACTAGAAAATTAATTGAAAGTTTGTGAAAAGAAGAGGATTCGAATTCAAAAAAGACAATTGCACAGGGAGAATTCATTTAATTGATCATATATGCTTGAATAAATATACCCGGATACAGTAACAAATATGATAAATTATGGTTTTTTTCTCAATAGCAATCTTTAATCTCGTCGTCGTTTCCATGGACACTCAACGATGCCAGCATTTCTCGAACGATCACAACCGACTCGTTCTCCTGTACCACATGCTCTTCGYACAGCAAACGACGAACGTAACGGCCGATCCAGCGGTCCTGAAAATTCGAAATGTTTATTCATGTTGTGGTTTTTGAAGGGGGGACTCCGACCAAAATTTTTTATTTCATTAAAATGTGCTGAAAATTATCTATTTTCTTAATATAGCGAAACAATTCAAAAAATCCGACATTCTTGAAGAACGCCGTTGAAAACAGGAAAAAAGTTTAAAAAACGGTGCATGAGAGGAACGATGATTTGCAGTAAGAAACCTAGGCCACGGCGTCTGACAGACATTTTTTCAAGCGGCTCCGCTGGCGTGGCCTAGATTTCTCACTGCAAATCCTCGTCTCTTCAGGGCACTTTACAAAAAATGCCTATTTTCCACGGCGTTTTTCAGGGATTTCAGATTTTTGCAAAATTTTTAGACCTTTTTAGGTTTTTCAGCTGTTTTTAAATTCTTTTCTCGATTCTTCTTTTTTCGATTCTTTTGAATTTTTTGTCTGAAATTTGGCAGGAGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 484 16</canonical_bands>
                <polymorphic_bands>516 484</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTCAATAGCAATCTTTAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATAGATAATTTTCAGCACATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTCAATAGCAATCTTTAATCTCGTCGTCGTTTCCATGGACACTCAACGATGCCAGCATTTCTCGAACGATCACAACCGACTCGTTCTCCTGTACCACATGCTCTTCGTACAGCAAACGACGAACGTAACGGCCGATCCAGCGGTCCTGAAAATTCGAAATGTTTATTCATGTTGTGGTTTTTGAAGGGGGGACTCCGACCAAAATTTTTTATTTCATTAAAATGTGCTGAAAATTATCTATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTCAATAGCAATCTTTAATCTCGTCGTCGTTTCCATGGACACTCAACGATGCCAGCATTTCTCGAACGATCACAACCGACTCGTTCTCCTGTACCACATGCTCTTCGYACAGCAAACGACGAACGTAACGGCCGATCCAGCGGTCCTGAAAATTCGAAATGTTTATTCATGTTGTGGTTTTTGAAGGGGGGACTCCGACCAAAATTTTTTATTTCATTAAAATGTGCTGAAAATTATCTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19887</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>500751</contig_pos>
        <strand>+</strand>
        <context>TAATCTCGTC[A/G]TCGTTTCCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATATGATAAATTATGGTTTTTTTCTCAATAGCAATCTTTAATCTCGTC</left_flank>
        <right_flank>TCGTTTCCATGGACACTCAACGATGCCAGCATTTCTCGAACGATCACAAC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTCTTCTTCTAAAAAACTCTTCTACAGTATTCAGCCCCTGTCATTCTTCTCATTTAAGGACATAATTAGACATGATCAGAAAGAGAACCAGTCCTAAGAACGGAGGAGTTTAATTGAAATGAGTCTTCGTTTTTCTTTTCCGTAGAAGAAGGAACAGTAATCATTTATATAAAGAGAGAAGGCGATGGGTTTTGTGACCTTCCTGGACAGAGATGGTGTAATTGACTATTGTTTTCATTGGATTTGATTGATTTCAATTTCGGATTGAGATGAGAAACGAAATGAAATGAAATGAACCTAGCAAAAAAAAAAACTAATTGTAAACTAGAAAATTAATTGAAAGTTTGTGAAAAGAAGAGGATTCGAATTCAAAAAAGACAATTGCACAGGGAGAATTCATTTAATTGATCATATATGCTTGAATAAATATACCCGGATACAGTAACAAATATGATAAATTATGGTTTTTTTCTCAATAGCAATCTTTAATCTCGTCGTCGTTTCCATGGACACTCAACGATGCCAGCATTTCTCGAACGATCACAACCGACTCGTTCTCCTGTACCACATGCTCTTCGTACAGCAAACGACGAACGTAACGGCCGATCCAGCGGTCCTGAAAATTCGAAATGTTTATTCATGTTGTGGTTTTTGAAGGGGGGACTCCGACCAAAATTTTTTATTTCATTAAAATGTGCTGAAAATTATCTATTTTCTTAATATAGCGAAACAATTCAAAAAATCCGACATTCTTGAAGAACGCCGTTGAAAACAGGAAAAAAGTTTAAAAAACGGTGCATGAGAGGAACGATGATTTGCAGTAAGAAACCTAGGCCACGGCGTCTGACAGACATTTTTTCAAGCGGCTCCGCTGGCGTGGCCTAGATTTCTCACTGCAAATCCTCGTCTCTTCAGGGCACTTTACAAAAAATGCCTATTTTCCACGGCGTTTTTCAGGGATTTCAGATTTTTGCAAAATTTTTAGACCTTTTTAGGT</canonical>
            <polymorphic>CTTTTCTTCTTCTAAAAAACTCTTCTACAGTATTCAGCCCCTGTCATTCTTCTCATTTAAGGACATAATTAGACATGATCAGAAAGAGAACCAGTCCTAAGAACGGAGGAGTTTAATTGAAATGAGTCTTCGTTTTTCTTTTCCGTAGAAGAAGGAACAGTAATCATTTATATAAAGAGAGAAGGCGATGGGTTTTGTGACCTTCCTGGACAGAGATGGTGTAATTGACTATTGTTTTCATTGGATTTGATTGATTTCAATTTCGGATTGAGATGAGAAACGAAATGAAATGAAATGAACCTAGCAAAAAAAAAAACTAATTGTAAACTAGAAAATTAATTGAAAGTTTGTGAAAAGAAGAGGATTCGAATTCAAAAAAGACAATTGCACAGGGAGAATTCATTTAATTGATCATATATGCTTGAATAAATATACCCGGATACAGTAACAAATATGATAAATTATGGTTTTTTTCTCAATAGCAATCTTTAATCTCGTCRTCGTTTCCATGGACACTCAACGATGCCAGCATTTCTCGAACGATCACAACCGACTCGTTCTCCTGTACCACATGCTCTTCGTACAGCAAACGACGAACGTAACGGCCGATCCAGCGGTCCTGAAAATTCGAAATGTTTATTCATGTTGTGGTTTTTGAAGGGGGGACTCCGACCAAAATTTTTTATTTCATTAAAATGTGCTGAAAATTATCTATTTTCTTAATATAGCGAAACAATTCAAAAAATCCGACATTCTTGAAGAACGCCGTTGAAAACAGGAAAAAAGTTTAAAAAACGGTGCATGAGAGGAACGATGATTTGCAGTAAGAAACCTAGGCCACGGCGTCTGACAGACATTTTTTCAAGCGGCTCCGCTGGCGTGGCCTAGATTTCTCACTGCAAATCCTCGTCTCTTCAGGGCACTTTACAAAAAATGCCTATTTTCCACGGCGTTTTTCAGGGATTTCAGATTTTTGCAAAATTTTTAGACCTTTTTAGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>500 405 95</canonical_bands>
                <polymorphic_bands>595 405</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTAATTGAAAGTTTGTGAA</pcr_primer_p1>
		<pcr_primer_p2>AAGAGCATGTGGTACAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTAATTGAAAGTTTGTGAAAAGAAGAGGATTCGAATTCAAAAAAGACAATTGCACAGGGAGAATTCATTTAATTGATCATATATGCTTGAATAAATATACCCGGATACAGTAACAAATATGATAAATTATGGTTTTTTTCTCAATAGCAATCTTTAATCTCGTCGTCGTTTCCATGGACACTCAACGATGCCAGCATTTCTCGAACGATCACAACCGACTCGTTCTCCTGTACCACATGCTCTT</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTAATTGAAAGTTTGTGAAAAGAAGAGGATTCGAATTCAAAAAAGACAATTGCACAGGGAGAATTCATTTAATTGATCATATATGCTTGAATAAATATACCCGGATACAGTAACAAATATGATAAATTATGGTTTTTTTCTCAATAGCAATCTTTAATCTCGTCRTCGTTTCCATGGACACTCAACGATGCCAGCATTTCTCGAACGATCACAACCGACTCGTTCTCCTGTACCACATGCTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19888</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>500553</contig_pos>
        <strand>+</strand>
        <context>gaaatgaaCC[A/T]AGCAAAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGATTTCAATTTCGGATTGAGATGAGAAACGAAATGAAATGAAATGAACC</left_flank>
        <right_flank>AGCAAAAAAAAAAACTAATTGTAAACTAGAAAATTAATTGAAAGTTTGTG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCGCATCATTTTTTAGAAATTCGGAATTCTATTCTGTTAGTCTGAAAAATGATCAGAAAAGGTTATTGTTTTCATACTTCACACAATCGAGTCGTTACGGGACACAATGTTCCTTCAAACAAAACTCATAGTCAGACATATTATGCCAGCTTGTAACATCCATTATTTCAACCCAAACCGTGTGACAGGTTATTTAACTTTTCTTCTTCTAAAAAACTCTTCTACAGTATTCAGCCCCTGTCATTCTTCTCATTTAAGGACATAATTAGACATGATCAGAAAGAGAACCAGTCCTAAGAACGGAGGAGTTTAATTGAAATGAGTCTTCGTTTTTCTTTTCCGTAGAAGAAGGAACAGTAATCATTTATATAAAGAGAGAAGGCGATGGGTTTTGTGACCTTCCTGGACAGAGATGGTGTAATTGACTATTGTTTTCATTGGATTTGATTGATTTCAATTTCGGATTGAGATGAGAAACGAAATGAAATGAAATGAACCTAGCAAAAAAAAAAACTAATTGTAAACTAGAAAATTAATTGAAAGTTTGTGAAAAGAAGAGGATTCGAATTCAAAAAAGACAATTGCACAGGGAGAATTCATTTAATTGATCATATATGCTTGAATAAATATACCCGGATACAGTAACAAATATGATAAATTATGGTTTTTTTCTCAATAGCAATCTTTAATCTCGTCGTCGTTTCCATGGACACTCAACGATGCCAGCATTTCTCGAACGATCACAACCGACTCGTTCTCCTGTACCACATGCTCTTCGTACAGCAAACGACGAACGTAACGGCCGATCCAGCGGTCCTGAAAATTCGAAATGTTTATTCATGTTGTGGTTTTTGAAGGGGGGACTCCGACCAAAATTTTTTATTTCATTAAAATGTGCTGAAAATTATCTATTTTCTTAATATAGCGAAACAATTCAAAAAATCCGACATTCTTGAAGAACGCCGTTGAAAACAGGAAAAAAGTTTAAAAAACGGTGCA</canonical>
            <polymorphic>TCCGCATCATTTTTTAGAAATTCGGAATTCTATTCTGTTAGTCTGAAAAATGATCAGAAAAGGTTATTGTTTTCATACTTCACACAATCGAGTCGTTACGGGACACAATGTTCCTTCAAACAAAACTCATAGTCAGACATATTATGCCAGCTTGTAACATCCATTATTTCAACCCAAACCGTGTGACAGGTTATTTAACTTTTCTTCTTCTAAAAAACTCTTCTACAGTATTCAGCCCCTGTCATTCTTCTCATTTAAGGACATAATTAGACATGATCAGAAAGAGAACCAGTCCTAAGAACGGAGGAGTTTAATTGAAATGAGTCTTCGTTTTTCTTTTCCGTAGAAGAAGGAACAGTAATCATTTATATAAAGAGAGAAGGCGATGGGTTTTGTGACCTTCCTGGACAGAGATGGTGTAATTGACTATTGTTTTCATTGGATTTGATTGATTTCAATTTCGGATTGAGATGAGAAACGAAATGAAATGAAATGAACCWAGCAAAAAAAAAAACTAATTGTAAACTAGAAAATTAATTGAAAGTTTGTGAAAAGAAGAGGATTCGAATTCAAAAAAGACAATTGCACAGGGAGAATTCATTTAATTGATCATATATGCTTGAATAAATATACCCGGATACAGTAACAAATATGATAAATTATGGTTTTTTTCTCAATAGCAATCTTTAATCTCGTCGTCGTTTCCATGGACACTCAACGATGCCAGCATTTCTCGAACGATCACAACCGACTCGTTCTCCTGTACCACATGCTCTTCGTACAGCAAACGACGAACGTAACGGCCGATCCAGCGGTCCTGAAAATTCGAAATGTTTATTCATGTTGTGGTTTTTGAAGGGGGGACTCCGACCAAAATTTTTTATTTCATTAAAATGTGCTGAAAATTATCTATTTTCTTAATATAGCGAAACAATTCAAAAAATCCGACATTCTTGAAGAACGCCGTTGAAAACAGGAAAAAAGTTTAAAAAACGGTGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 474 27</canonical_bands>
                <polymorphic_bands>526 474</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATTGAAATGAGTCTTCGTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTCTTCTTTTCACAAACTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAATTGAAATGAGTCTTCGTTTTTCTTTTCCGTAGAAGAAGGAACAGTAATCATTTATATAAAGAGAGAAGGCGATGGGTTTTGTGACCTTCCTGGACAGAGATGGTGTAATTGACTATTGTTTTCATTGGATTTGATTGATTTCAATTTCGGATTGAGATGAGAAACGAAATGAAATGAAATGAACCTAGCAAAAAAAAAAACTAATTGTAAACTAGAAAATTAATTGAAAGTTTGTGAAAAGAAGAG</canonical_amplicon>
		<polymorphic_amplicon>TAATTGAAATGAGTCTTCGTTTTTCTTTTCCGTAGAAGAAGGAACAGTAATCATTTATATAAAGAGAGAAGGCGATGGGTTTTGTGACCTTCCTGGACAGAGATGGTGTAATTGACTATTGTTTTCATTGGATTTGATTGATTTCAATTTCGGATTGAGATGAGAAACGAAATGAAATGAAATGAACCWAGCAAAAAAAAAAACTAATTGTAAACTAGAAAATTAATTGAAAGTTTGTGAAAAGAAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19912</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>23126</contig_pos>
        <strand>+</strand>
        <context>GGAGAAGATT[C/T]CTTTCTATCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGACGAGTTGAGTTTTGGTATGGCATCTTCAAAAGGACTTGGAGAAGATT</left_flank>
        <right_flank>CTTTCTATCTTCTTTTGGTTTTTCTTTTGATTTCCGCGGTTTTTCCGTAG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCGAAGCACTCGAGTCCATTCACAAACTGCTGCATACTCCATTCGATTGAAGTCGTCCAACATTTGAACATGAGTGTCTATAACGGATTCAACCATATTGTGAACATTGGTTTGGCATGTGTGGGGTTCTGAAACAATTTGTGGTTGCAGAAAAACATTTTGAGTCATAGTAAGTACCTTCAGAGTTTCTTCTTCGACTTCTGAATCGTCTATCTCTTCTTTTTGAAATTTCAATTTCTCTTTCAGTTTCACCAACATTCGAGGAAGACGAAGATGAGGAACTTCGAGACTTCAATCTTTCAATTATCCCCTTCTCCAAATAATTCCTTCTTTCAATAATTCTTTCCTTGGACTTCTTTCTCTTCTCATCTTCTTTTTTGTTATCTACATTTAATGTCTCTTCAAACGTTCGATTGGTTTCTCTGACTGTCGATTTAGAAGATTCAGACGACGAGTTGAGTTTTGGTATGGCATCTTCAAAAGGACTTGGAGAAGATTCCTTTCTATCTTCTTTTGGTTTTTCTTTTGATTTCCGCGGTTTTTCCGTAGATAGCTTCTTCTCTGGTGATGCTTTTGGTGTTGAAGCTTCAGACGACGTTGAGGAGGAAGAAGAAGAAGAAGACTTCACTGATTCAAAGTCTGATCCATACTTGGAACTTAATTTAGAAGTGGAAGATTCTGATGATGATGAAGAGCTAGAATCGGTGCTAGATTCCGTTTCAGAAGAAGAGGATGGCGAAGTTGAAGATTCGGATGATGCTGGTGTCTTCACTCTCCTTTTTAATTCCTCTTTTTTCGTCTTCTGAACTTTAGATTCTGGAGCTGGTTGTGCTCTCACTGGAGGCTTCCTTGGAGGAGACGGAAGAACCTCTTCGAAGACTTCATCAAAAACAATTGAATCTCCATCTGAACTGTCACTTCCACTTTGAATTGCCTTTTTGAACGGACTCTTGGCGAGCATTTTAGTTTTTGGGATCTCCTCGGATAATTCTTCTTCTT</canonical>
            <polymorphic>GTCGAAGCACTCGAGTCCATTCACAAACTGCTGCATACTCCATTCGATTGAAGTCGTCCAACATTTGAACATGAGTGTCTATAACGGATTCAACCATATTGTGAACATTGGTTTGGCATGTGTGGGGTTCTGAAACAATTTGTGGTTGCAGAAAAACATTTTGAGTCATAGTAAGTACCTTCAGAGTTTCTTCTTCGACTTCTGAATCGTCTATCTCTTCTTTTTGAAATTTCAATTTCTCTTTCAGTTTCACCAACATTCGAGGAAGACGAAGATGAGGAACTTCGAGACTTCAATCTTTCAATTATCCCCTTCTCCAAATAATTCCTTCTTTCAATAATTCTTTCCTTGGACTTCTTTCTCTTCTCATCTTCTTTTTTGTTATCTACATTTAATGTCTCTTCAAACGTTCGATTGGTTTCTCTGACTGTCGATTTAGAAGATTCAGACGACGAGTTGAGTTTTGGTATGGCATCTTCAAAAGGACTTGGAGAAGATTYCTTTCTATCTTCTTTTGGTTTTTCTTTTGATTTCCGCGGTTTTTCCGTAGATAGCTTCTTCTCTGGTGATGCTTTTGGTGTTGAAGCTTCAGACGACGTTGAGGAGGAAGAAGAAGAAGAAGACTTCACTGATTCAAAGTCTGATCCATACTTGGAACTTAATTTAGAAGTGGAAGATTCTGATGATGATGAAGAGCTAGAATCGGTGCTAGATTCCGTTTCAGAAGAAGAGGATGGCGAAGTTGAAGATTCGGATGATGCTGGTGTCTTCACTCTCCTTTTTAATTCCTCTTTTTTCGTCTTCTGAACTTTAGATTCTGGAGCTGGTTGTGCTCTCACTGGAGGCTTCCTTGGAGGAGACGGAAGAACCTCTTCGAAGACTTCATCAAAAACAATTGAATCTCCATCTGAACTGTCACTTCCACTTTGAATTGCCTTTTTGAACGGACTCTTGGCGAGCATTTTAGTTTTTGGGATCTCCTCGGATAATTCTTCTTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>238 135 84 76 74 66 54 53 49 45 41 36 24 13 12</canonical_bands>
                <polymorphic_bands>238 189 84 76 74 66 53 49 45 41 36 24 13 12</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>238 135 117 102 87 84 66 54 45 36 24 12</canonical_bands>
                <polymorphic_bands>238 189 117 102 87 84 66 45 36 24 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTCTCTGACTGTCGATTTAGA</pcr_primer_p1>
		<pcr_primer_p2>AATTAAGTTCCAAGTATGGATCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTTTCTCTGACTGTCGATTTAGAAGATTCAGACGACGAGTTGAGTTTTGGTATGGCATCTTCAAAAGGACTTGGAGAAGATTCCTTTCTATCTTCTTTTGGTTTTTCTTTTGATTTCCGCGGTTTTTCCGTAGATAGCTTCTTCTCTGGTGATGCTTTTGGTGTTGAAGCTTCAGACGACGTTGAGGAGGAAGAAGAAGAAGAAGACTTCACTGATTCAAAGTCTGATCCATACTTGGAACTTAATT</canonical_amplicon>
		<polymorphic_amplicon>GTTTCTCTGACTGTCGATTTAGAAGATTCAGACGACGAGTTGAGTTTTGGTATGGCATCTTCAAAAGGACTTGGAGAAGATTYCTTTCTATCTTCTTTTGGTTTTTCTTTTGATTTCCGCGGTTTTTCCGTAGATAGCTTCTTCTCTGGTGATGCTTTTGGTGTTGAAGCTTCAGACGACGTTGAGGAGGAAGAAGAAGAAGAAGACTTCACTGATTCAAAGTCTGATCCATACTTGGAACTTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19914</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>248712</contig_pos>
        <strand>+</strand>
        <context>AACTCATCTG[A/G]TGATTCATCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGAATCGCAAGTCTTCTGAATCCTCGGAATCCAATTCCAACTCATCTG</left_flank>
        <right_flank>TGATTCATCTGATTCTTCTGAAGAGGATAATGGATCCAGAAACAGTACAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCTGTCAAAGATGAAGGATGCAAACTGGTCATTCAAACGATTCCACGATCATTGTTAAACATGGAAAGGTTGGTTGAACTATGGAGGAATCCTCAATAGCAAACAATCCCACGGATCCATTTCTTGTCCTATCCACAGCCAGACATCATATGAGCTTTTGGACAATTAACTCTCTGATTCTCCCCCTTTTTTTGTGCACTTTCATTCGTTCCTCCTACGAAAAACTCCCCCAACCTACAACATCTGTAACTATTTAAACATTGCTTCGGATTACTTCAAACCATCAGTTCATTCGTTCGAAAAATGCGTGCCTGGATTCCTCTTCTTATTCTTCTTGTTGCTTTGGCTGTTGTTGGTAGGTTTCTGAAATTTTGAAACTTTGATAATCATCCCGTTTTCAGCCGAATCTCGCTCTTCGGAGAGCAGAGAGTCTCGTAAGGGACCAAAGAAGAATCGCAAGTCTTCTGAATCCTCGGAATCCAATTCCAACTCATCTGGTGATTCATCTGATTCTTCTGAAGAGGATAATGGATCCAGAAACAGTACAACTCCTGTTTCGACCAACTCTACCACTCCAACCACCGCCGAGCCAACCACTTCTTTCTTCGAAATCCCTACATCCAGTCCAGTTATTCTTCCATGAAACTGGCAATTTCTTGAAGAGTGAATTTTGTAGTTCAATAAAATCAGCGAGCATTTTATAAAGTCCACATTGTCATAGTTTCAACACAGAAAACATGACTCAATTATCTTTAAGAAGCTGAAGTTGTATTTCAACTTATAGTTTATCCGTGCCTGACCTTTGTACGCGATTCCGGCAAATGACACAAAAACGATTAGCTCGGAATGCCGAATAATCAAGAACACACAACGAATTCTCAACTTTTTCAAATGTTATTTGAAATTGTTGGTTGGCACGAATAGCGTGCGGAATCTTTTGATGTGTCAGGCTTTTCGAGAAATTACTAAGATTCAAGATTTTTGTAGTATAGATGCAA</canonical>
            <polymorphic>TTCCTGTCAAAGATGAAGGATGCAAACTGGTCATTCAAACGATTCCACGATCATTGTTAAACATGGAAAGGTTGGTTGAACTATGGAGGAATCCTCAATAGCAAACAATCCCACGGATCCATTTCTTGTCCTATCCACAGCCAGACATCATATGAGCTTTTGGACAATTAACTCTCTGATTCTCCCCCTTTTTTTGTGCACTTTCATTCGTTCCTCCTACGAAAAACTCCCCCAACCTACAACATCTGTAACTATTTAAACATTGCTTCGGATTACTTCAAACCATCAGTTCATTCGTTCGAAAAATGCGTGCCTGGATTCCTCTTCTTATTCTTCTTGTTGCTTTGGCTGTTGTTGGTAGGTTTCTGAAATTTTGAAACTTTGATAATCATCCCGTTTTCAGCCGAATCTCGCTCTTCGGAGAGCAGAGAGTCTCGTAAGGGACCAAAGAAGAATCGCAAGTCTTCTGAATCCTCGGAATCCAATTCCAACTCATCTGRTGATTCATCTGATTCTTCTGAAGAGGATAATGGATCCAGAAACAGTACAACTCCTGTTTCGACCAACTCTACCACTCCAACCACCGCCGAGCCAACCACTTCTTTCTTCGAAATCCCTACATCCAGTCCAGTTATTCTTCCATGAAACTGGCAATTTCTTGAAGAGTGAATTTTGTAGTTCAATAAAATCAGCGAGCATTTTATAAAGTCCACATTGTCATAGTTTCAACACAGAAAACATGACTCAATTATCTTTAAGAAGCTGAAGTTGTATTTCAACTTATAGTTTATCCGTGCCTGACCTTTGTACGCGATTCCGGCAAATGACACAAAAACGATTAGCTCGGAATGCCGAATAATCAAGAACACACAACGAATTCTCAACTTTTTCAAATGTTATTTGAAATTGTTGGTTGGCACGAATAGCGTGCGGAATCTTTTGATGTGTCAGGCTTTTCGAGAAATTACTAAGATTCAAGATTTTTGTAGTATAGATGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>190 112 72 70 66 65 61 53 49 47 44 39 33 24 19 17 15 11 9 2 2</canonical_bands>
                <polymorphic_bands>262 112 70 66 65 61 53 49 47 44 39 33 24 19 17 15 11 9 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGGATTCCTCTTCTTATTCTTC</pcr_primer_p1>
		<pcr_primer_p2>GTCGAAACAGGAGTTGTACTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGGATTCCTCTTCTTATTCTTCTTGTTGCTTTGGCTGTTGTTGGTAGGTTTCTGAAATTTTGAAACTTTGATAATCATCCCGTTTTCAGCCGAATCTCGCTCTTCGGAGAGCAGAGAGTCTCGTAAGGGACCAAAGAAGAATCGCAAGTCTTCTGAATCCTCGGAATCCAATTCCAACTCATCTGGTGATTCATCTGATTCTTCTGAAGAGGATAATGGATCCAGAAACAGTACAACTCCTGTTTCGAC</canonical_amplicon>
		<polymorphic_amplicon>CTGGATTCCTCTTCTTATTCTTCTTGTTGCTTTGGCTGTTGTTGGTAGGTTTCTGAAATTTTGAAACTTTGATAATCATCCCGTTTTCAGCCGAATCTCGCTCTTCGGAGAGCAGAGAGTCTCGTAAGGGACCAAAGAAGAATCGCAAGTCTTCTGAATCCTCGGAATCCAATTCCAACTCATCTGRTGATTCATCTGATTCTTCTGAAGAGGATAATGGATCCAGAAACAGTACAACTCCTGTTTCGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19915</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>250168</contig_pos>
        <strand>+</strand>
        <context>AAATAATCAA[A/G]ATTATTTGCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTCTTTCAATCAACAATGGGAATGTAGGAAGTTGTTAAAAATAATCAA</left_flank>
        <right_flank>ATTATTTGCGACTGAGAACATCCATAATTGATCTCTTCTTACGAATGTCT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCGTGGAGCCCACTTTTATTTTATCTCTTTTTTCTCGGTTTCCGTGCAAGATACTAAAAAGTGGTCGATTGACAAAATTTAGCTGATAAAATTTCCTACCTTTTGTTAGTTTTAACAATTTTTTGGTATCTTTTACAGAAACCAACATAAATCGGCTAAATGTCAAAAGTTAGGGGTGTCATTCTATTAGAGTTTGGTTTACGGTATATTGATAACGATTCTGCCCAAAACAGAACCGTCTGTCAGAAAATGAAGTTCCTTCAAAAAGTAAGAGATTGACGGATCTTGTCAAACAATGTGGAAAATTAGATTATTGGTGGCTTGATTTTGAAAAATTACAAAAATATTGGGTCTCTTCAGTATCTTCCAGCTTCTAGTTTTGGTCTCTAGAACTTGTACCTGAACAATTTAAACCAAACTTCTTCATATTCATAGTCTACAACTGCTTTATTCTTTCAATCAACAATGGGAATGTAGGAAGTTGTTAAAAATAATCAAGATTATTTGCGACTGAGAACATCCATAATTGATCTCTTCTTACGAATGTCTCCTGGTCCTGGAAGAATACCAAAAATGTGAATTTGTTCGATCGGACCATCTCCAGAACCAGAACCCTCTTCTTCAACGATGACACCCTGAATTAAAAAAAGGCTTGCTATTTGGAGTTTAGAGATTCTAAACCAACTTCTCCGATTATCTCTTCTGAAGAGGACGATGAAGGATCTTCAAGAGAAATCACGGAATCACCAGAGTCTGCCGACTCATCATACTGTCCTAAAGTTTAAAAATTCGAATAGAACTATTTTTCTAAAGAATCACCGAAAACAGTGGAGATTGTGACGATGAGTAGGAAGAATAAGACGAGCGATCTCATAGCGTCGGAGCCCAATTAATGGTAATGACACGGGGAGGAACAACTTTGGAAACGAGAGTTATGACATGACCTGCTGCTCAAATAAAGAGTTTGTACAGCAGCATCAGCAACAGCATTTTTCCATG</canonical>
            <polymorphic>CCCGTGGAGCCCACTTTTATTTTATCTCTTTTTTCTCGGTTTCCGTGCAAGATACTAAAAAGTGGTCGATTGACAAAATTTAGCTGATAAAATTTCCTACCTTTTGTTAGTTTTAACAATTTTTTGGTATCTTTTACAGAAACCAACATAAATCGGCTAAATGTCAAAAGTTAGGGGTGTCATTCTATTAGAGTTTGGTTTACGGTATATTGATAACGATTCTGCCCAAAACAGAACCGTCTGTCAGAAAATGAAGTTCCTTCAAAAAGTAAGAGATTGACGGATCTTGTCAAACAATGTGGAAAATTAGATTATTGGTGGCTTGATTTTGAAAAATTACAAAAATATTGGGTCTCTTCAGTATCTTCCAGCTTCTAGTTTTGGTCTCTAGAACTTGTACCTGAACAATTTAAACCAAACTTCTTCATATTCATAGTCTACAACTGCTTTATTCTTTCAATCAACAATGGGAATGTAGGAAGTTGTTAAAAATAATCAARATTATTTGCGACTGAGAACATCCATAATTGATCTCTTCTTACGAATGTCTCCTGGTCCTGGAAGAATACCAAAAATGTGAATTTGTTCGATCGGACCATCTCCAGAACCAGAACCCTCTTCTTCAACGATGACACCCTGAATTAAAAAAAGGCTTGCTATTTGGAGTTTAGAGATTCTAAACCAACTTCTCCGATTATCTCTTCTGAAGAGGACGATGAAGGATCTTCAAGAGAAATCACGGAATCACCAGAGTCTGCCGACTCATCATACTGTCCTAAAGTTTAAAAATTCGAATAGAACTATTTTTCTAAAGAATCACCGAAAACAGTGGAGATTGTGACGATGAGTAGGAAGAATAAGACGAGCGATCTCATAGCGTCGGAGCCCAATTAATGGTAATGACACGGGGAGGAACAACTTTGGAAACGAGAGTTATGACATGACCTGCTGCTCAAATAAAGAGTTTGTACAGCAGCATCAGCAACAGCATTTTTCCATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>388 272 126 109 105</canonical_bands>
                <polymorphic_bands>388 272 214 126</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACAAAAATATTGGGTCTCTTCA</pcr_primer_p1>
		<pcr_primer_p2>ACAAATTCACATTTTTGGTATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TACAAAAATATTGGGTCTCTTCAGTATCTTCCAGCTTCTAGTTTTGGTCTCTAGAACTTGTACCTGAACAATTTAAACCAAACTTCTTCATATTCATAGTCTACAACTGCTTTATTCTTTCAATCAACAATGGGAATGTAGGAAGTTGTTAAAAATAATCAAGATTATTTGCGACTGAGAACATCCATAATTGATCTCTTCTTACGAATGTCTCCTGGTCCTGGAAGAATACCAAAAATGTGAATTTGT</canonical_amplicon>
		<polymorphic_amplicon>TACAAAAATATTGGGTCTCTTCAGTATCTTCCAGCTTCTAGTTTTGGTCTCTAGAACTTGTACCTGAACAATTTAAACCAAACTTCTTCATATTCATAGTCTACAACTGCTTTATTCTTTCAATCAACAATGGGAATGTAGGAAGTTGTTAAAAATAATCAARATTATTTGCGACTGAGAACATCCATAATTGATCTCTTCTTACGAATGTCTCCTGGTCCTGGAAGAATACCAAAAATGTGAATTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19916</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>250334</contig_pos>
        <strand>+</strand>
        <context>GCTATTTGGA[A/G]TTTAGAGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCTTCTTCAACGATGACACCCTGAATTAAAAAAAGGCTTGCTATTTGGA</left_flank>
        <right_flank>TTTAGAGATTCTAAACCAACTTCTCCGATTATCTCTTCTGAAGAGGACGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTTAGGGGTGTCATTCTATTAGAGTTTGGTTTACGGTATATTGATAACGATTCTGCCCAAAACAGAACCGTCTGTCAGAAAATGAAGTTCCTTCAAAAAGTAAGAGATTGACGGATCTTGTCAAACAATGTGGAAAATTAGATTATTGGTGGCTTGATTTTGAAAAATTACAAAAATATTGGGTCTCTTCAGTATCTTCCAGCTTCTAGTTTTGGTCTCTAGAACTTGTACCTGAACAATTTAAACCAAACTTCTTCATATTCATAGTCTACAACTGCTTTATTCTTTCAATCAACAATGGGAATGTAGGAAGTTGTTAAAAATAATCAAGATTATTTGCGACTGAGAACATCCATAATTGATCTCTTCTTACGAATGTCTCCTGGTCCTGGAAGAATACCAAAAATGTGAATTTGTTCGATCGGACCATCTCCAGAACCAGAACCCTCTTCTTCAACGATGACACCCTGAATTAAAAAAAGGCTTGCTATTTGGAGTTTAGAGATTCTAAACCAACTTCTCCGATTATCTCTTCTGAAGAGGACGATGAAGGATCTTCAAGAGAAATCACGGAATCACCAGAGTCTGCCGACTCATCATACTGTCCTAAAGTTTAAAAATTCGAATAGAACTATTTTTCTAAAGAATCACCGAAAACAGTGGAGATTGTGACGATGAGTAGGAAGAATAAGACGAGCGATCTCATAGCGTCGGAGCCCAATTAATGGTAATGACACGGGGAGGAACAACTTTGGAAACGAGAGTTATGACATGACCTGCTGCTCAAATAAAGAGTTTGTACAGCAGCATCAGCAACAGCATTTTTCCATGGTTCCGCTGGTTTTGATGAGAAAAACGAACCATTTTCAGTCAATATTTGATTTTAATGTTGAAGAAGACACATGCTAGACGCTTTGTCGAAAAAAATTTGACATTTATCACGGAATTTTTAATGCAATTTGAATGAAAGAGGTGTTTCTCTGGAAAACAATTGGAA</canonical>
            <polymorphic>AAAGTTAGGGGTGTCATTCTATTAGAGTTTGGTTTACGGTATATTGATAACGATTCTGCCCAAAACAGAACCGTCTGTCAGAAAATGAAGTTCCTTCAAAAAGTAAGAGATTGACGGATCTTGTCAAACAATGTGGAAAATTAGATTATTGGTGGCTTGATTTTGAAAAATTACAAAAATATTGGGTCTCTTCAGTATCTTCCAGCTTCTAGTTTTGGTCTCTAGAACTTGTACCTGAACAATTTAAACCAAACTTCTTCATATTCATAGTCTACAACTGCTTTATTCTTTCAATCAACAATGGGAATGTAGGAAGTTGTTAAAAATAATCAAGATTATTTGCGACTGAGAACATCCATAATTGATCTCTTCTTACGAATGTCTCCTGGTCCTGGAAGAATACCAAAAATGTGAATTTGTTCGATCGGACCATCTCCAGAACCAGAACCCTCTTCTTCAACGATGACACCCTGAATTAAAAAAAGGCTTGCTATTTGGARTTTAGAGATTCTAAACCAACTTCTCCGATTATCTCTTCTGAAGAGGACGATGAAGGATCTTCAAGAGAAATCACGGAATCACCAGAGTCTGCCGACTCATCATACTGTCCTAAAGTTTAAAAATTCGAATAGAACTATTTTTCTAAAGAATCACCGAAAACAGTGGAGATTGTGACGATGAGTAGGAAGAATAAGACGAGCGATCTCATAGCGTCGGAGCCCAATTAATGGTAATGACACGGGGAGGAACAACTTTGGAAACGAGAGTTATGACATGACCTGCTGCTCAAATAAAGAGTTTGTACAGCAGCATCAGCAACAGCATTTTTCCATGGTTCCGCTGGTTTTGATGAGAAAAACGAACCATTTTCAGTCAATATTTGATTTTAATGTTGAAGAAGACACATGCTAGACGCTTTGTCGAAAAAAATTTGACATTTATCACGGAATTTTTAATGCAATTTGAATGAAAGAGGTGTTTCTCTGGAAAACAATTGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACCCTCTTCTTCAACGAT</pcr_primer_p1>
		<pcr_primer_p2>TTATTCTTCCTACTCATCGTCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAACCCTCTTCTTCAACGATGACACCCTGAATTAAAAAAAGGCTTGCTATTTGGAGTTTAGAGATTCTAAACCAACTTCTCCGATTATCTCTTCTGAAGAGGACGATGAAGGATCTTCAAGAGAAATCACGGAATCACCAGAGTCTGCCGACTCATCATACTGTCCTAAAGTTTAAAAATTCGAATAGAACTATTTTTCTAAAGAATCACCGAAAACAGTGGAGATTGTGACGATGAGTAGGAAGAATAA</canonical_amplicon>
		<polymorphic_amplicon>GAACCCTCTTCTTCAACGATGACACCCTGAATTAAAAAAAGGCTTGCTATTTGGARTTTAGAGATTCTAAACCAACTTCTCCGATTATCTCTTCTGAAGAGGACGATGAAGGATCTTCAAGAGAAATCACGGAATCACCAGAGTCTGCCGACTCATCATACTGTCCTAAAGTTTAAAAATTCGAATAGAACTATTTTTCTAAAGAATCACCGAAAACAGTGGAGATTGTGACGATGAGTAGGAAGAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19917</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>250355</contig_pos>
        <strand>+</strand>
        <context>CTAAACCAAC[C/T]TCTCCGATTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGAATTAAAAAAAGGCTTGCTATTTGGAGTTTAGAGATTCTAAACCAAC</left_flank>
        <right_flank>TCTCCGATTATCTCTTCTGAAGAGGACGATGAAGGATCTTCAAGAGAAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGAGTTTGGTTTACGGTATATTGATAACGATTCTGCCCAAAACAGAACCGTCTGTCAGAAAATGAAGTTCCTTCAAAAAGTAAGAGATTGACGGATCTTGTCAAACAATGTGGAAAATTAGATTATTGGTGGCTTGATTTTGAAAAATTACAAAAATATTGGGTCTCTTCAGTATCTTCCAGCTTCTAGTTTTGGTCTCTAGAACTTGTACCTGAACAATTTAAACCAAACTTCTTCATATTCATAGTCTACAACTGCTTTATTCTTTCAATCAACAATGGGAATGTAGGAAGTTGTTAAAAATAATCAAGATTATTTGCGACTGAGAACATCCATAATTGATCTCTTCTTACGAATGTCTCCTGGTCCTGGAAGAATACCAAAAATGTGAATTTGTTCGATCGGACCATCTCCAGAACCAGAACCCTCTTCTTCAACGATGACACCCTGAATTAAAAAAAGGCTTGCTATTTGGAGTTTAGAGATTCTAAACCAACTTCTCCGATTATCTCTTCTGAAGAGGACGATGAAGGATCTTCAAGAGAAATCACGGAATCACCAGAGTCTGCCGACTCATCATACTGTCCTAAAGTTTAAAAATTCGAATAGAACTATTTTTCTAAAGAATCACCGAAAACAGTGGAGATTGTGACGATGAGTAGGAAGAATAAGACGAGCGATCTCATAGCGTCGGAGCCCAATTAATGGTAATGACACGGGGAGGAACAACTTTGGAAACGAGAGTTATGACATGACCTGCTGCTCAAATAAAGAGTTTGTACAGCAGCATCAGCAACAGCATTTTTCCATGGTTCCGCTGGTTTTGATGAGAAAAACGAACCATTTTCAGTCAATATTTGATTTTAATGTTGAAGAAGACACATGCTAGACGCTTTGTCGAAAAAAATTTGACATTTATCACGGAATTTTTAATGCAATTTGAATGAAAGAGGTGTTTCTCTGGAAAACAATTGGAATACTGCATCTATCGTACTCGT</canonical>
            <polymorphic>TTAGAGTTTGGTTTACGGTATATTGATAACGATTCTGCCCAAAACAGAACCGTCTGTCAGAAAATGAAGTTCCTTCAAAAAGTAAGAGATTGACGGATCTTGTCAAACAATGTGGAAAATTAGATTATTGGTGGCTTGATTTTGAAAAATTACAAAAATATTGGGTCTCTTCAGTATCTTCCAGCTTCTAGTTTTGGTCTCTAGAACTTGTACCTGAACAATTTAAACCAAACTTCTTCATATTCATAGTCTACAACTGCTTTATTCTTTCAATCAACAATGGGAATGTAGGAAGTTGTTAAAAATAATCAAGATTATTTGCGACTGAGAACATCCATAATTGATCTCTTCTTACGAATGTCTCCTGGTCCTGGAAGAATACCAAAAATGTGAATTTGTTCGATCGGACCATCTCCAGAACCAGAACCCTCTTCTTCAACGATGACACCCTGAATTAAAAAAAGGCTTGCTATTTGGAGTTTAGAGATTCTAAACCAACYTCTCCGATTATCTCTTCTGAAGAGGACGATGAAGGATCTTCAAGAGAAATCACGGAATCACCAGAGTCTGCCGACTCATCATACTGTCCTAAAGTTTAAAAATTCGAATAGAACTATTTTTCTAAAGAATCACCGAAAACAGTGGAGATTGTGACGATGAGTAGGAAGAATAAGACGAGCGATCTCATAGCGTCGGAGCCCAATTAATGGTAATGACACGGGGAGGAACAACTTTGGAAACGAGAGTTATGACATGACCTGCTGCTCAAATAAAGAGTTTGTACAGCAGCATCAGCAACAGCATTTTTCCATGGTTCCGCTGGTTTTGATGAGAAAAACGAACCATTTTCAGTCAATATTTGATTTTAATGTTGAAGAAGACACATGCTAGACGCTTTGTCGAAAAAAATTTGACATTTATCACGGAATTTTTAATGCAATTTGAATGAAAGAGGTGTTTCTCTGGAAAACAATTGGAATACTGCATCTATCGTACTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACCCTCTTCTTCAACGAT</pcr_primer_p1>
		<pcr_primer_p2>TTATTCTTCCTACTCATCGTCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAACCCTCTTCTTCAACGATGACACCCTGAATTAAAAAAAGGCTTGCTATTTGGAGTTTAGAGATTCTAAACCAACTTCTCCGATTATCTCTTCTGAAGAGGACGATGAAGGATCTTCAAGAGAAATCACGGAATCACCAGAGTCTGCCGACTCATCATACTGTCCTAAAGTTTAAAAATTCGAATAGAACTATTTTTCTAAAGAATCACCGAAAACAGTGGAGATTGTGACGATGAGTAGGAAGAATAA</canonical_amplicon>
		<polymorphic_amplicon>GAACCCTCTTCTTCAACGATGACACCCTGAATTAAAAAAAGGCTTGCTATTTGGAGTTTAGAGATTCTAAACCAACYTCTCCGATTATCTCTTCTGAAGAGGACGATGAAGGATCTTCAAGAGAAATCACGGAATCACCAGAGTCTGCCGACTCATCATACTGTCCTAAAGTTTAAAAATTCGAATAGAACTATTTTTCTAAAGAATCACCGAAAACAGTGGAGATTGTGACGATGAGTAGGAAGAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19918</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>294668</contig_pos>
        <strand>+</strand>
        <context>ACACGCATGG[A/G]ATGAGCAGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTCAGCCCGGGGACCATATTTTGCAAATAGGCAATATTAACACGCATGG</left_flank>
        <right_flank>ATGAGCAGTCAACAAGTGAGTTTTTTGGTTTTCAAAAACTGAAAAAAACA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGTGTCAAATACAACAAGATCCGGGTTCTTCTTCTTCTTCTTCTCTTCCAGATAAATCTCTGAAAAATCATGCCAAAATCGAAAAAGTTTGCAATCAACAAAGTCAATTATCAGGTGTCGCGTGGTAATGTTAGTGCTTGGGAATATCAAAAAATTTGAATTTTTTTGGGTCACATTTTTTTGAACATTTCTGGGGTCCAAAATATATGAGCCCTTTCTTCTAGTAAATATTATATTCAAAAAAATGACTTCCAGTTATCTGGCGACTGGACACAAGTCGAAGTGATTCATCTGGATACAGAAACGGGAGGTCTCGGATTCGGAATCGTCGGCGGAACCAGCACTGGGGTCGTTGTTAAAACTATACTGCCTGGTAGTCCGGCAGATAAAGTGGGTTTTTTTAAACTTCTGAATTTAAACTTGCCTTGTTTTGTTCAGGATGGCCACCTTCAGCCCGGGGACCATATTTTGCAAATAGGCAATATTAACACGCATGGGATGAGCAGTCAACAAGTGAGTTTTTTGGTTTTCAAAAACTGAAAAAAACAGTCCGCGAAAGTATAATTATAGTTGGACCATACAAAAAAATTTCAAAAATTGATTCCATTGTCCTGGGGGATCGCTCGAAGAATGAAAAATATTGACTGGATGAAATTAATGACCCGCCGAAAGACACAAACAAAAATTATTATGGAATGCTATTGTTGTCTGGAAAGCCAGACATTCCCTTTTTTTGAAAAATTTTAGCTTTGAGAGTGTTCTGGTAGTCTCAAAATGTAGCAAAACCGCAAAAGTTATAAATTTCTAAAATATGAATTTGATTAAATCAAAATTGTTTAGAAACTTATATTTTCATTTAGTAAGATTCGAATGGAGACGCCGCGGGATACAGAAACTATCTCTAATTGAAGAAAATAATAGTAGAATTTTGAATTTAAGAATCCAAAGAAGTTCGATTTGCAATTTTGAGCTTCATTCAGAGTATAGTTCCATTTTTT</canonical>
            <polymorphic>CTGGTGTCAAATACAACAAGATCCGGGTTCTTCTTCTTCTTCTTCTCTTCCAGATAAATCTCTGAAAAATCATGCCAAAATCGAAAAAGTTTGCAATCAACAAAGTCAATTATCAGGTGTCGCGTGGTAATGTTAGTGCTTGGGAATATCAAAAAATTTGAATTTTTTTGGGTCACATTTTTTTGAACATTTCTGGGGTCCAAAATATATGAGCCCTTTCTTCTAGTAAATATTATATTCAAAAAAATGACTTCCAGTTATCTGGCGACTGGACACAAGTCGAAGTGATTCATCTGGATACAGAAACGGGAGGTCTCGGATTCGGAATCGTCGGCGGAACCAGCACTGGGGTCGTTGTTAAAACTATACTGCCTGGTAGTCCGGCAGATAAAGTGGGTTTTTTTAAACTTCTGAATTTAAACTTGCCTTGTTTTGTTCAGGATGGCCACCTTCAGCCCGGGGACCATATTTTGCAAATAGGCAATATTAACACGCATGGRATGAGCAGTCAACAAGTGAGTTTTTTGGTTTTCAAAAACTGAAAAAAACAGTCCGCGAAAGTATAATTATAGTTGGACCATACAAAAAAATTTCAAAAATTGATTCCATTGTCCTGGGGGATCGCTCGAAGAATGAAAAATATTGACTGGATGAAATTAATGACCCGCCGAAAGACACAAACAAAAATTATTATGGAATGCTATTGTTGTCTGGAAAGCCAGACATTCCCTTTTTTTGAAAAATTTTAGCTTTGAGAGTGTTCTGGTAGTCTCAAAATGTAGCAAAACCGCAAAAGTTATAAATTTCTAAAATATGAATTTGATTAAATCAAAATTGTTTAGAAACTTATATTTTCATTTAGTAAGATTCGAATGGAGACGCCGCGGGATACAGAAACTATCTCTAATTGAAGAAAATAATAGTAGAATTTTGAATTTAAGAATCCAAAGAAGTTCGATTTGCAATTTTGAGCTTCATTCAGAGTATAGTTCCATTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAATTTAAACTTGCCTTGTT</pcr_primer_p1>
		<pcr_primer_p2>TTCATCCAGTCAATATTTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTGAATTTAAACTTGCCTTGTTTTGTTCAGGATGGCCACCTTCAGCCCGGGGACCATATTTTGCAAATAGGCAATATTAACACGCATGGGATGAGCAGTCAACAAGTGAGTTTTTTGGTTTTCAAAAACTGAAAAAAACAGTCCGCGAAAGTATAATTATAGTTGGACCATACAAAAAAATTTCAAAAATTGATTCCATTGTCCTGGGGGATCGCTCGAAGAATGAAAAATATTGACTGGATGAA</canonical_amplicon>
		<polymorphic_amplicon>CTGAATTTAAACTTGCCTTGTTTTGTTCAGGATGGCCACCTTCAGCCCGGGGACCATATTTTGCAAATAGGCAATATTAACACGCATGGRATGAGCAGTCAACAAGTGAGTTTTTTGGTTTTCAAAAACTGAAAAAAACAGTCCGCGAAAGTATAATTATAGTTGGACCATACAAAAAAATTTCAAAAATTGATTCCATTGTCCTGGGGGATCGCTCGAAGAATGAAAAATATTGACTGGATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19956</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>302170</contig_pos>
        <strand>+</strand>
        <context>CTCTCTCATT[C/T]CCATTYCTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTCACGTCTTCGAACCAACAGCCAATGAGAAACAACTTCCTCTCTCATT</left_flank>
        <right_flank>CCATTCCTCGCCGCCAATCAAGAAACCGTAGTCAAAGCGAAATCAGATCT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTTAACTTGAGAATCGATGAGTATCACTAATTTGAAAATAACGTAAAACCTGTATTAGAAGGGTCACTTTAATAGATGGTCCTCTCTAATAGAAGGGCACTCCGAGATGAGCTTTGGAAAAATTGAAGAGCCCCCTGTGATAGGAGGATCCCCTCATACTACAAAATGTTTTGAAGAAGAGTTCACTGGATTTTTCGATGAAATTTTTCGGAAAAAAAAATGGCCGGAAAAGTAGAAGGGCCCCCTCAAATAGAAGGGCCCCTGTAATAGAAGTGTCCTCAGGAGCTACCTTGGAACAGGACCGGCCCTTGTAATACAGGGTGGACGGTATTCAAAAATAAGATCCAGATAGTTTTAGTTTAGAACTCAATTTTCCCATATCTCGCGATTCTTACTTTATACCGATTTCAGCATTTATGACTCTTCCCCATTTCCAGATCTCAACATCTTCACGTCTTCGAACCAACAGCCAATGAGAAACAACTTCCTCTCTCATTCCCATTCCTCGCCGCCAATCAAGAAACCGTAGTCAAAGCGAAATCAGATCTGGATTTGACATCAACTCGTGCAGAAACTACTCACCTCCTTCAGAGAGTCTCCAGAAGATTACGATCGAAATCGTTAGAGAATTTCCATGGTTTGGCAGTTTGGAATTGTGTTCCACTGGTTATATATTTATGCAAAGATTCACGAGGTCTAGGATTTTCAATTGTGGATTATAAGGTACTGTATTGATATTTTTAGGATAGAAAAATAAATATGAATCACTTTCAGGATCCAACACATCAAGATGAAAGCGTCATCGTTGTGCAATCGCTTGTTCCGGGAGGAGTTGCTCAGGCAGACGGACGGATAGTTCCTGGTGATCGATTGTTGTTTGTGAACAATCACGATTTGTCGAATAGCAGGTGAATCAGGAAGATTGTAATGTTATAATTTGAAATTTCCAAATGGTCAATATGATCTTAACCAAAAAGAAAAAATCAAAGTCTGACATA</canonical>
            <polymorphic>TGCTTAACTTGAGAATCGATGAGTATCACTAATTTGAAAATAACGTAAAACCTGTATTAGAAGGGTCACTTTAATAGATGGTCCTCTCTAATAGAAGGGCACTCCGAGATGAGCTTTGGAAAAATTGAAGAGCCCCCTGTGATAGGAGGATCCCCTCATACTACAAAATGTTTTGAAGAAGAGTTCACTGGATTTTTCGATGAAATTTTTCGGAAAAAAAAATGGCCGGAAAAGTAGAAGGGCCCCCTCAAATAGAAGGGCCCCTGTAATAGAAGTGTCCTCAGGAGCTACCTTGGAACAGGACCGGCCCTTGTAATACAGGGTGGACGGTATTCAAAAATAAGATCCAGATAGTTTTAGTTTAGAACTCAATTTTCCCATATCTCGCGATTCTTACTTTATACCGATTTCAGCATTTATGACTCTTCCCCATTTCCAGATCTCAACATCTTCACGTCTTCGAACCAACAGCCAATGAGAAACAACTTCCTCTCTCATTYCCATTCCTCGCCGCCAATCAAGAAACCGTAGTCAAAGCGAAATCAGATCTGGATTTGACATCAACTCGTGCAGAAACTACTCACCTCCTTCAGAGAGTCTCCAGAAGATTACGATCGAAATCGTTAGAGAATTTCCATGGTTTGGCAGTTTGGAATTGTGTTCCACTGGTTATATATTTATGCAAAGATTCACGAGGTCTAGGATTTTCAATTGTGGATTATAAGGTACTGTATTGATATTTTTAGGATAGAAAAATAAATATGAATCACTTTCAGGATCCAACACATCAAGATGAAAGCGTCATCGTTGTGCAATCGCTTGTTCCGGGAGGAGTTGCTCAGGCAGACGGACGGATAGTTCCTGGTGATCGATTGTTGTTTGTGAACAATCACGATTTGTCGAATAGCAGGTGAATCAGGAAGATTGTAATGTTATAATTTGAAATTTCCAAATGGTCAATATGATCTTAACCAAAAAGAAAAAATCAAAGTCTGACATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTATACCGATTTCAGCATTTA</pcr_primer_p1>
		<pcr_primer_p2>CAAACCATGGAAATTCTCTAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTTTATACCGATTTCAGCATTTATGACTCTTCCCCATTTCCAGATCTCAACATCTTCACGTCTTCGAACCAACAGCCAATGAGAAACAACTTCCTCTCTCATTCCCATTCCTCGCCGCCAATCAAGAAACCGTAGTCAAAGCGAAATCAGATCTGGATTTGACATCAACTCGTGCAGAAACTACTCACCTCCTTCAGAGAGTCTCCAGAAGATTACGATCGAAATCGTTAGAGAATTTCCATGGTTTG</canonical_amplicon>
		<polymorphic_amplicon>CTTTATACCGATTTCAGCATTTATGACTCTTCCCCATTTCCAGATCTCAACATCTTCACGTCTTCGAACCAACAGCCAATGAGAAACAACTTCCTCTCTCATTYCCATTCCTCGCCGCCAATCAAGAAACCGTAGTCAAAGCGAAATCAGATCTGGATTTGACATCAACTCGTGCAGAAACTACTCACCTCCTTCAGAGAGTCTCCAGAAGATTACGATCGAAATCGTTAGAGAATTTCCATGGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19957</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>302176</contig_pos>
        <strand>+</strand>
        <context>CATTYCCATT[C/T]CTCGCCGCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCTTCGAACCAACAGCCAATGAGAAACAACTTCCTCTCTCATTCCCATT</left_flank>
        <right_flank>CTCGCCGCCAATCAAGAAACCGTAGTCAAAGCGAAATCAGATCTGGATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTGAGAATCGATGAGTATCACTAATTTGAAAATAACGTAAAACCTGTATTAGAAGGGTCACTTTAATAGATGGTCCTCTCTAATAGAAGGGCACTCCGAGATGAGCTTTGGAAAAATTGAAGAGCCCCCTGTGATAGGAGGATCCCCTCATACTACAAAATGTTTTGAAGAAGAGTTCACTGGATTTTTCGATGAAATTTTTCGGAAAAAAAAATGGCCGGAAAAGTAGAAGGGCCCCCTCAAATAGAAGGGCCCCTGTAATAGAAGTGTCCTCAGGAGCTACCTTGGAACAGGACCGGCCCTTGTAATACAGGGTGGACGGTATTCAAAAATAAGATCCAGATAGTTTTAGTTTAGAACTCAATTTTCCCATATCTCGCGATTCTTACTTTATACCGATTTCAGCATTTATGACTCTTCCCCATTTCCAGATCTCAACATCTTCACGTCTTCGAACCAACAGCCAATGAGAAACAACTTCCTCTCTCATTCCCATTCCTCGCCGCCAATCAAGAAACCGTAGTCAAAGCGAAATCAGATCTGGATTTGACATCAACTCGTGCAGAAACTACTCACCTCCTTCAGAGAGTCTCCAGAAGATTACGATCGAAATCGTTAGAGAATTTCCATGGTTTGGCAGTTTGGAATTGTGTTCCACTGGTTATATATTTATGCAAAGATTCACGAGGTCTAGGATTTTCAATTGTGGATTATAAGGTACTGTATTGATATTTTTAGGATAGAAAAATAAATATGAATCACTTTCAGGATCCAACACATCAAGATGAAAGCGTCATCGTTGTGCAATCGCTTGTTCCGGGAGGAGTTGCTCAGGCAGACGGACGGATAGTTCCTGGTGATCGATTGTTGTTTGTGAACAATCACGATTTGTCGAATAGCAGGTGAATCAGGAAGATTGTAATGTTATAATTTGAAATTTCCAAATGGTCAATATGATCTTAACCAAAAAGAAAAAATCAAAGTCTGACATAGAACTT</canonical>
            <polymorphic>ACTTGAGAATCGATGAGTATCACTAATTTGAAAATAACGTAAAACCTGTATTAGAAGGGTCACTTTAATAGATGGTCCTCTCTAATAGAAGGGCACTCCGAGATGAGCTTTGGAAAAATTGAAGAGCCCCCTGTGATAGGAGGATCCCCTCATACTACAAAATGTTTTGAAGAAGAGTTCACTGGATTTTTCGATGAAATTTTTCGGAAAAAAAAATGGCCGGAAAAGTAGAAGGGCCCCCTCAAATAGAAGGGCCCCTGTAATAGAAGTGTCCTCAGGAGCTACCTTGGAACAGGACCGGCCCTTGTAATACAGGGTGGACGGTATTCAAAAATAAGATCCAGATAGTTTTAGTTTAGAACTCAATTTTCCCATATCTCGCGATTCTTACTTTATACCGATTTCAGCATTTATGACTCTTCCCCATTTCCAGATCTCAACATCTTCACGTCTTCGAACCAACAGCCAATGAGAAACAACTTCCTCTCTCATTCCCATTYCTCGCCGCCAATCAAGAAACCGTAGTCAAAGCGAAATCAGATCTGGATTTGACATCAACTCGTGCAGAAACTACTCACCTCCTTCAGAGAGTCTCCAGAAGATTACGATCGAAATCGTTAGAGAATTTCCATGGTTTGGCAGTTTGGAATTGTGTTCCACTGGTTATATATTTATGCAAAGATTCACGAGGTCTAGGATTTTCAATTGTGGATTATAAGGTACTGTATTGATATTTTTAGGATAGAAAAATAAATATGAATCACTTTCAGGATCCAACACATCAAGATGAAAGCGTCATCGTTGTGCAATCGCTTGTTCCGGGAGGAGTTGCTCAGGCAGACGGACGGATAGTTCCTGGTGATCGATTGTTGTTTGTGAACAATCACGATTTGTCGAATAGCAGGTGAATCAGGAAGATTGTAATGTTATAATTTGAAATTTCCAAATGGTCAATATGATCTTAACCAAAAAGAAAAAATCAAAGTCTGACATAGAACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTATACCGATTTCAGCATTTA</pcr_primer_p1>
		<pcr_primer_p2>CAAACCATGGAAATTCTCTAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTTTATACCGATTTCAGCATTTATGACTCTTCCCCATTTCCAGATCTCAACATCTTCACGTCTTCGAACCAACAGCCAATGAGAAACAACTTCCTCTCTCATTCCCATTCCTCGCCGCCAATCAAGAAACCGTAGTCAAAGCGAAATCAGATCTGGATTTGACATCAACTCGTGCAGAAACTACTCACCTCCTTCAGAGAGTCTCCAGAAGATTACGATCGAAATCGTTAGAGAATTTCCATGGTTTG</canonical_amplicon>
		<polymorphic_amplicon>CTTTATACCGATTTCAGCATTTATGACTCTTCCCCATTTCCAGATCTCAACATCTTCACGTCTTCGAACCAACAGCCAATGAGAAACAACTTCCTCTCTCATTCCCATTYCTCGCCGCCAATCAAGAAACCGTAGTCAAAGCGAAATCAGATCTGGATTTGACATCAACTCGTGCAGAAACTACTCACCTCCTTCAGAGAGTCTCCAGAAGATTACGATCGAAATCGTTAGAGAATTTCCATGGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19958</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>306086</contig_pos>
        <strand>+</strand>
        <context>CTTTCGCTTA[A/T]TATTTCCTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTTTCTCCAAATGGCCAAAAAACTTTTCGCTGTGCTTCTCTTTCGCTTA</left_flank>
        <right_flank>TATTTCCTTTTTTTCAGTATTTTTATATCAACCTATTTGATAGCCCAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATTGAGATAATTGAGCACAACGTGAACGTATAGATGTTGACTTCTATTAGGGAAACACAACAAATGAATTCATGAAAATGTTGATGATTCATATACACGGTCCCAATACGGTACATTTTTATCAGTAGCGGTGATAATTGTAAAAAAGCTTACTGGTAAAAATTCGGATGATTATAATTTAGGAACTTCAAAAAAGAAGGATAAAAAAGTTAACAGTTTTGAACGAATTTTGAGACGTAATTTGAAATGGTTCTAATTTTGTTTTAATTAAATGGGTGATGCCGTCGTATTAGGGGTACCTCTAAAGTCTTCAAACAATCCTAAAATTTCAGACATCCGGCACAACATCAAGTCAAGAAACTGTGTGGATCGGAACCGCTGAACAATATAGAAAACTTCATCCTCAAGTTAGTTGTTCAGTTTTTAAAAAAAATTATTGTCAAATTTACTTTCTCCAAATGGCCAAAAAACTTTTCGCTGTGCTTCTCTTTCGCTTATTATTTCCTTTTTTTCAGTATTTTTATATCAACCTATTTGATAGCCCAAAACGAATCTACAAATCAGAAGAATCCGAGTGGAGACTTCGAGTAAATCAAATCTCAAAATCAAGAGCTTCTCTTCTTTTTTTCGCAAAGTTCTTCTTTTCACACAAAGCACACAAGTCGATTTCTTTTTGCGGATTTTTTTTTCGACCCTTACTACTTCTATGCTAATTCTATCCGAATAGCACCGCCCATATTCTTTTTGAAACCAAAAAAATCTAGGTCCTCATGTCACAGCCGCTTCTATTTATCCTTTCTTCTCACCGTCGTTTTGTCAATTTTTTCAGGGCTATTATCCATCGAGAAGTCCATCTGCAGCACGAAGTGAACGGAGTATCGAAGGAGTATGTTTCTTCTTCTTTTTCCTTACTTCTACTACTAAAATCTCCCCGATTTCCGCCTGTTACTTCTATTCTTTCGCTGCTTATCACTTCACTGAACAAGCACATAAATCCA</canonical>
            <polymorphic>CTATTGAGATAATTGAGCACAACGTGAACGTATAGATGTTGACTTCTATTAGGGAAACACAACAAATGAATTCATGAAAATGTTGATGATTCATATACACGGTCCCAATACGGTACATTTTTATCAGTAGCGGTGATAATTGTAAAAAAGCTTACTGGTAAAAATTCGGATGATTATAATTTAGGAACTTCAAAAAAGAAGGATAAAAAAGTTAACAGTTTTGAACGAATTTTGAGACGTAATTTGAAATGGTTCTAATTTTGTTTTAATTAAATGGGTGATGCCGTCGTATTAGGGGTACCTCTAAAGTCTTCAAACAATCCTAAAATTTCAGACATCCGGCACAACATCAAGTCAAGAAACTGTGTGGATCGGAACCGCTGAACAATATAGAAAACTTCATCCTCAAGTTAGTTGTTCAGTTTTTAAAAAAAATTATTGTCAAATTTACTTTCTCCAAATGGCCAAAAAACTTTTCGCTGTGCTTCTCTTTCGCTTAWTATTTCCTTTTTTTCAGTATTTTTATATCAACCTATTTGATAGCCCAAAACGAATCTACAAATCAGAAGAATCCGAGTGGAGACTTCGAGTAAATCAAATCTCAAAATCAAGAGCTTCTCTTCTTTTTTTCGCAAAGTTCTTCTTTTCACACAAAGCACACAAGTCGATTTCTTTTTGCGGATTTTTTTTTCGACCCTTACTACTTCTATGCTAATTCTATCCGAATAGCACCGCCCATATTCTTTTTGAAACCAAAAAAATCTAGGTCCTCATGTCACAGCCGCTTCTATTTATCCTTTCTTCTCACCGTCGTTTTGTCAATTTTTTCAGGGCTATTATCCATCGAGAAGTCCATCTGCAGCACGAAGTGAACGGAGTATCGAAGGAGTATGTTTCTTCTTCTTTTTCCTTACTTCTACTACTAAAATCTCCCCGATTTCCGCCTGTTACTTCTATTCTTTCGCTGCTTATCACTTCACTGAACAAGCACATAAATCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCTGAACAATATAGAAAACTTC</pcr_primer_p1>
		<pcr_primer_p2>AGAGAAGCTCTTGATTTTGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CGCTGAACAATATAGAAAACTTCATCCTCAAGTTAGTTGTTCAGTTTTTAAAAAAAATTATTGTCAAATTTACTTTCTCCAAATGGCCAAAAAACTTTTCGCTGTGCTTCTCTTTCGCTTATTATTTCCTTTTTTTCAGTATTTTTATATCAACCTATTTGATAGCCCAAAACGAATCTACAAATCAGAAGAATCCGAGTGGAGACTTCGAGTAAATCAAATCTCAAAATCAAGAGCTTCTCT</canonical_amplicon>
		<polymorphic_amplicon>CGCTGAACAATATAGAAAACTTCATCCTCAAGTTAGTTGTTCAGTTTTTAAAAAAAATTATTGTCAAATTTACTTTCTCCAAATGGCCAAAAAACTTTTCGCTGTGCTTCTCTTTCGCTTAWTATTTCCTTTTTTTCAGTATTTTTATATCAACCTATTTGATAGCCCAAAACGAATCTACAAATCAGAAGAATCCGAGTGGAGACTTCGAGTAAATCAAATCTCAAAATCAAGAGCTTCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19959</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>305864</contig_pos>
        <strand>+</strand>
        <context>AATTAAATGG[G/T]TGATGCCGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTTTGAGACGTAATTTGAAATGGTTCTAATTTTGTTTTAATTAAATGG</left_flank>
        <right_flank>TGATGCCGTCGTATTAGGGGTACCTCTAAAGTCTTCAAACAATCCTAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGATCTGACGGTCCTAAAACTAAAAAAAAGTCATCTAAGAAAGTAATAACAATTTTTATCGACGGATTATGACCCACCGTATGATCTCTTAGAAGCCCGTGCACTTTGAGCTCAGTTATCTCTGTTCCTTTGAAAGGTACCAAAAACTTGTCAACTGATGAATTATTCATCTTAATATCACAAATATTTTATCAGTTAACAGATTTTTGATCTTTCACAGCTATTGAGATAATTGAGCACAACGTGAACGTATAGATGTTGACTTCTATTAGGGAAACACAACAAATGAATTCATGAAAATGTTGATGATTCATATACACGGTCCCAATACGGTACATTTTTATCAGTAGCGGTGATAATTGTAAAAAAGCTTACTGGTAAAAATTCGGATGATTATAATTTAGGAACTTCAAAAAAGAAGGATAAAAAAGTTAACAGTTTTGAACGAATTTTGAGACGTAATTTGAAATGGTTCTAATTTTGTTTTAATTAAATGGGTGATGCCGTCGTATTAGGGGTACCTCTAAAGTCTTCAAACAATCCTAAAATTTCAGACATCCGGCACAACATCAAGTCAAGAAACTGTGTGGATCGGAACCGCTGAACAATATAGAAAACTTCATCCTCAAGTTAGTTGTTCAGTTTTTAAAAAAAATTATTGTCAAATTTACTTTCTCCAAATGGCCAAAAAACTTTTCGCTGTGCTTCTCTTTCGCTTATTATTTCCTTTTTTTCAGTATTTTTATATCAACCTATTTGATAGCCCAAAACGAATCTACAAATCAGAAGAATCCGAGTGGAGACTTCGAGTAAATCAAATCTCAAAATCAAGAGCTTCTCTTCTTTTTTTCGCAAAGTTCTTCTTTTCACACAAAGCACACAAGTCGATTTCTTTTTGCGGATTTTTTTTTCGACCCTTACTACTTCTATGCTAATTCTATCCGAATAGCACCGCCCATATTCTTTTTGAAACCAAAAAAATCTAGGTCCTCATGTCA</canonical>
            <polymorphic>GGAGATCTGACGGTCCTAAAACTAAAAAAAAGTCATCTAAGAAAGTAATAACAATTTTTATCGACGGATTATGACCCACCGTATGATCTCTTAGAAGCCCGTGCACTTTGAGCTCAGTTATCTCTGTTCCTTTGAAAGGTACCAAAAACTTGTCAACTGATGAATTATTCATCTTAATATCACAAATATTTTATCAGTTAACAGATTTTTGATCTTTCACAGCTATTGAGATAATTGAGCACAACGTGAACGTATAGATGTTGACTTCTATTAGGGAAACACAACAAATGAATTCATGAAAATGTTGATGATTCATATACACGGTCCCAATACGGTACATTTTTATCAGTAGCGGTGATAATTGTAAAAAAGCTTACTGGTAAAAATTCGGATGATTATAATTTAGGAACTTCAAAAAAGAAGGATAAAAAAGTTAACAGTTTTGAACGAATTTTGAGACGTAATTTGAAATGGTTCTAATTTTGTTTTAATTAAATGGKTGATGCCGTCGTATTAGGGGTACCTCTAAAGTCTTCAAACAATCCTAAAATTTCAGACATCCGGCACAACATCAAGTCAAGAAACTGTGTGGATCGGAACCGCTGAACAATATAGAAAACTTCATCCTCAAGTTAGTTGTTCAGTTTTTAAAAAAAATTATTGTCAAATTTACTTTCTCCAAATGGCCAAAAAACTTTTCGCTGTGCTTCTCTTTCGCTTATTATTTCCTTTTTTTCAGTATTTTTATATCAACCTATTTGATAGCCCAAAACGAATCTACAAATCAGAAGAATCCGAGTGGAGACTTCGAGTAAATCAAATCTCAAAATCAAGAGCTTCTCTTCTTTTTTTCGCAAAGTTCTTCTTTTCACACAAAGCACACAAGTCGATTTCTTTTTGCGGATTTTTTTTTCGACCCTTACTACTTCTATGCTAATTCTATCCGAATAGCACCGCCCATATTCTTTTTGAAACCAAAAAAATCTAGGTCCTCATGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>145 115 95 78 77 71 70 64 47 40 37 36 33 25 23 22 7 7 2 2 2 2</canonical_bands>
                <polymorphic_bands>209 115 95 78 77 71 70 47 40 37 36 33 25 23 22 7 7 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTATCAGTAGCGGTGATAATTG</pcr_primer_p1>
		<pcr_primer_p2>ACACAGTTTCTTGACTTGATGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTATCAGTAGCGGTGATAATTGTAAAAAAGCTTACTGGTAAAAATTCGGATGATTATAATTTAGGAACTTCAAAAAAGAAGGATAAAAAAGTTAACAGTTTTGAACGAATTTTGAGACGTAATTTGAAATGGTTCTAATTTTGTTTTAATTAAATGGGTGATGCCGTCGTATTAGGGGTACCTCTAAAGTCTTCAAACAATCCTAAAATTTCAGACATCCGGCACAACATCAAGTCAAGAAACTGTGT</canonical_amplicon>
		<polymorphic_amplicon>TTTATCAGTAGCGGTGATAATTGTAAAAAAGCTTACTGGTAAAAATTCGGATGATTATAATTTAGGAACTTCAAAAAAGAAGGATAAAAAAGTTAACAGTTTTGAACGAATTTTGAGACGTAATTTGAAATGGTTCTAATTTTGTTTTAATTAAATGGKTGATGCCGTCGTATTAGGGGTACCTCTAAAGTCTTCAAACAATCCTAAAATTTCAGACATCCGGCACAACATCAAGTCAAGAAACTGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19960</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>305824</contig_pos>
        <strand>+</strand>
        <context>AATTTTGAGA[C/T]GTAATTTGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTCAAAAAAGAAGGATAAAAAAGTTAACAGTTTTGAACGAATTTTGAGA</left_flank>
        <right_flank>GTAATTTGAAATGGTTCTAATTTTGTTTTAATTAAATGGGTGATGCCGTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTTAAATAATTGAGATTTCTCAAATTGGTGCTGTAACAGGAGATCTGACGGTCCTAAAACTAAAAAAAAGTCATCTAAGAAAGTAATAACAATTTTTATCGACGGATTATGACCCACCGTATGATCTCTTAGAAGCCCGTGCACTTTGAGCTCAGTTATCTCTGTTCCTTTGAAAGGTACCAAAAACTTGTCAACTGATGAATTATTCATCTTAATATCACAAATATTTTATCAGTTAACAGATTTTTGATCTTTCACAGCTATTGAGATAATTGAGCACAACGTGAACGTATAGATGTTGACTTCTATTAGGGAAACACAACAAATGAATTCATGAAAATGTTGATGATTCATATACACGGTCCCAATACGGTACATTTTTATCAGTAGCGGTGATAATTGTAAAAAAGCTTACTGGTAAAAATTCGGATGATTATAATTTAGGAACTTCAAAAAAGAAGGATAAAAAAGTTAACAGTTTTGAACGAATTTTGAGACGTAATTTGAAATGGTTCTAATTTTGTTTTAATTAAATGGGTGATGCCGTCGTATTAGGGGTACCTCTAAAGTCTTCAAACAATCCTAAAATTTCAGACATCCGGCACAACATCAAGTCAAGAAACTGTGTGGATCGGAACCGCTGAACAATATAGAAAACTTCATCCTCAAGTTAGTTGTTCAGTTTTTAAAAAAAATTATTGTCAAATTTACTTTCTCCAAATGGCCAAAAAACTTTTCGCTGTGCTTCTCTTTCGCTTATTATTTCCTTTTTTTCAGTATTTTTATATCAACCTATTTGATAGCCCAAAACGAATCTACAAATCAGAAGAATCCGAGTGGAGACTTCGAGTAAATCAAATCTCAAAATCAAGAGCTTCTCTTCTTTTTTTCGCAAAGTTCTTCTTTTCACACAAAGCACACAAGTCGATTTCTTTTTGCGGATTTTTTTTTCGACCCTTACTACTTCTATGCTAATTCTATCCGAATAGCACCGCCCA</canonical>
            <polymorphic>ATCTTAAATAATTGAGATTTCTCAAATTGGTGCTGTAACAGGAGATCTGACGGTCCTAAAACTAAAAAAAAGTCATCTAAGAAAGTAATAACAATTTTTATCGACGGATTATGACCCACCGTATGATCTCTTAGAAGCCCGTGCACTTTGAGCTCAGTTATCTCTGTTCCTTTGAAAGGTACCAAAAACTTGTCAACTGATGAATTATTCATCTTAATATCACAAATATTTTATCAGTTAACAGATTTTTGATCTTTCACAGCTATTGAGATAATTGAGCACAACGTGAACGTATAGATGTTGACTTCTATTAGGGAAACACAACAAATGAATTCATGAAAATGTTGATGATTCATATACACGGTCCCAATACGGTACATTTTTATCAGTAGCGGTGATAATTGTAAAAAAGCTTACTGGTAAAAATTCGGATGATTATAATTTAGGAACTTCAAAAAAGAAGGATAAAAAAGTTAACAGTTTTGAACGAATTTTGAGAYGTAATTTGAAATGGTTCTAATTTTGTTTTAATTAAATGGGTGATGCCGTCGTATTAGGGGTACCTCTAAAGTCTTCAAACAATCCTAAAATTTCAGACATCCGGCACAACATCAAGTCAAGAAACTGTGTGGATCGGAACCGCTGAACAATATAGAAAACTTCATCCTCAAGTTAGTTGTTCAGTTTTTAAAAAAAATTATTGTCAAATTTACTTTCTCCAAATGGCCAAAAAACTTTTCGCTGTGCTTCTCTTTCGCTTATTATTTCCTTTTTTTCAGTATTTTTATATCAACCTATTTGATAGCCCAAAACGAATCTACAAATCAGAAGAATCCGAGTGGAGACTTCGAGTAAATCAAATCTCAAAATCAAGAGCTTCTCTTCTTTTTTTCGCAAAGTTCTTCTTTTCACACAAAGCACACAAGTCGATTTCTTTTTGCGGATTTTTTTTTCGACCCTTACTACTTCTATGCTAATTCTATCCGAATAGCACCGCCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>501 284 209 6</canonical_bands>
                <polymorphic_bands>710 284 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTATCAGTAGCGGTGATAATTG</pcr_primer_p1>
		<pcr_primer_p2>ACACAGTTTCTTGACTTGATGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTATCAGTAGCGGTGATAATTGTAAAAAAGCTTACTGGTAAAAATTCGGATGATTATAATTTAGGAACTTCAAAAAAGAAGGATAAAAAAGTTAACAGTTTTGAACGAATTTTGAGACGTAATTTGAAATGGTTCTAATTTTGTTTTAATTAAATGGGTGATGCCGTCGTATTAGGGGTACCTCTAAAGTCTTCAAACAATCCTAAAATTTCAGACATCCGGCACAACATCAAGTCAAGAAACTGTGT</canonical_amplicon>
		<polymorphic_amplicon>TTTATCAGTAGCGGTGATAATTGTAAAAAAGCTTACTGGTAAAAATTCGGATGATTATAATTTAGGAACTTCAAAAAAGAAGGATAAAAAAGTTAACAGTTTTGAACGAATTTTGAGAYGTAATTTGAAATGGTTCTAATTTTGTTTTAATTAAATGGGTGATGCCGTCGTATTAGGGGTACCTCTAAAGTCTTCAAACAATCCTAAAATTTCAGACATCCGGCACAACATCAAGTCAAGAAACTGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19961</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>324305</contig_pos>
        <strand>+</strand>
        <context>GTTGATTCAC[A/G]TTTTCATGGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATGGTTCCACTCACATCGATGGCAAAGCTATCTGCAAAAGTTGATTCAC</left_flank>
        <right_flank>TTTTCATGGCTCAAATTATTCAGATCAATGTTGAGAGTCGCGATTTCAGC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGTAGTTGTCATGATCATTCAGTATTCTTTGATGAAACAGCTGGTCGATATTAGCATAGGCGAACTCCCCATTCATAAACTGAATCTGAAAATGGGTTCTTGATGATAACAAGATTCTTAAGTTTATTATTTACTTTATATTCTGAATTCCCTCGGCTATATTTAACAACAGCATCTTGAAGTTGGCCATCTGCTGTTCGAATCTGCACTGTCTCCCCAATTAACCCATTTTTAGAACTCTCTGAAAAATATACCATTTGAAAAAACTAGGAGAGAGTAGACGTTTACTATTATCAATATCAGGATTGTGATTTTGATGATGCTGATGATGATGATAGCTCGTAGAAGGTGCTTGATCGAGTTCCTCCCGGTTGTAGGTGTCTTCTTGTTTTATATCGTTTCCTTCTTTCCTATAATAAGAAAAATGCATATTTAGTTAGTTAGTTAGATGGTTCCACTCACATCGATGGCAAAGCTATCTGCAAAAGTTGATTCACATTTTCATGGCTCAAATTATTCAGATCAATGTTGAGAGTCGCGATTTCAGCTGCCGAAATCTACAATTCAATTTTTCTGGATTATGTATGATTATGGTCAATCTCACATAGAACTGTTGCTGTTTTGAATCGGTTATGTTCACACCTCCATCATGGGTAAGAATTATATGCATCGACGCATCATCCATATGACCATGTTCCTCATCCTCGTCTCTTGGATATTGATTTGCATCACCACCGGCTTCATTCCGTCCGAAATTGTTCCCGAGCGTGTCATGATGAATCATATGATCATGAGAATCTTCTTCAACAACTTCTTCTTGATCGTTTTGTTTGGCTTGTCTTTCCTGGCTGATTGCAACAACAACACTCAACTGTTCCTCTGTTAAATTATTTATATCTTCCATTTCAAATCCAGCTGCGTACATGTCTTCAGATGTAATTTGCACCATGTTCTGAAATGAAATGTATGAAATTTTCAAACTTTTGGATTTAAAAAAA</canonical>
            <polymorphic>TTGGTAGTTGTCATGATCATTCAGTATTCTTTGATGAAACAGCTGGTCGATATTAGCATAGGCGAACTCCCCATTCATAAACTGAATCTGAAAATGGGTTCTTGATGATAACAAGATTCTTAAGTTTATTATTTACTTTATATTCTGAATTCCCTCGGCTATATTTAACAACAGCATCTTGAAGTTGGCCATCTGCTGTTCGAATCTGCACTGTCTCCCCAATTAACCCATTTTTAGAACTCTCTGAAAAATATACCATTTGAAAAAACTAGGAGAGAGTAGACGTTTACTATTATCAATATCAGGATTGTGATTTTGATGATGCTGATGATGATGATAGCTCGTAGAAGGTGCTTGATCGAGTTCCTCCCGGTTGTAGGTGTCTTCTTGTTTTATATCGTTTCCTTCTTTCCTATAATAAGAAAAATGCATATTTAGTTAGTTAGTTAGATGGTTCCACTCACATCGATGGCAAAGCTATCTGCAAAAGTTGATTCACRTTTTCATGGCTCAAATTATTCAGATCAATGTTGAGAGTCGCGATTTCAGCTGCCGAAATCTACAATTCAATTTTTCTGGATTATGTATGATTATGGTCAATCTCACATAGAACTGTTGCTGTTTTGAATCGGTTATGTTCACACCTCCATCATGGGTAAGAATTATATGCATCGACGCATCATCCATATGACCATGTTCCTCATCCTCGTCTCTTGGATATTGATTTGCATCACCACCGGCTTCATTCCGTCCGAAATTGTTCCCGAGCGTGTCATGATGAATCATATGATCATGAGAATCTTCTTCAACAACTTCTTCTTGATCGTTTTGTTTGGCTTGTCTTTCCTGGCTGATTGCAACAACAACACTCAACTGTTCCTCTGTTAAATTATTTATATCTTCCATTTCAAATCCAGCTGCGTACATGTCTTCAGATGTAATTTGCACCATGTTCTGAAATGAAATGTATGAAATTTTCAAACTTTTGGATTTAAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>466 315 182 37</canonical_bands>
                <polymorphic_bands>466 315 219</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGATGATGATAGCTCGTAGAAG</pcr_primer_p1>
		<pcr_primer_p2>CCAGAAAAATTGAATTGTAGATT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATGATGATGATAGCTCGTAGAAGGTGCTTGATCGAGTTCCTCCCGGTTGTAGGTGTCTTCTTGTTTTATATCGTTTCCTTCTTTCCTATAATAAGAAAAATGCATATTTAGTTAGTTAGTTAGATGGTTCCACTCACATCGATGGCAAAGCTATCTGCAAAAGTTGATTCACATTTTCATGGCTCAAATTATTCAGATCAATGTTGAGAGTCGCGATTTCAGCTGCCGAAATCTACAATTCAATTTTTCTGG</canonical_amplicon>
		<polymorphic_amplicon>ATGATGATGATAGCTCGTAGAAGGTGCTTGATCGAGTTCCTCCCGGTTGTAGGTGTCTTCTTGTTTTATATCGTTTCCTTCTTTCCTATAATAAGAAAAATGCATATTTAGTTAGTTAGTTAGATGGTTCCACTCACATCGATGGCAAAGCTATCTGCAAAAGTTGATTCACRTTTTCATGGCTCAAATTATTCAGATCAATGTTGAGAGTCGCGATTTCAGCTGCCGAAATCTACAATTCAATTTTTCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19962</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>324575</contig_pos>
        <strand>+</strand>
        <context>GTTCCCGAGC[A/G]TGTCATGATG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGATTTGCATCACCACCGGCTTCATTCCGTCCGAAATTGTTCCCGAGC</left_flank>
        <right_flank>TGTCATGATGAATCATATGATCATGAGAATCTTCTTCAACAACTTCTTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAGAGAGTAGACGTTTACTATTATCAATATCAGGATTGTGATTTTGATGATGCTGATGATGATGATAGCTCGTAGAAGGTGCTTGATCGAGTTCCTCCCGGTTGTAGGTGTCTTCTTGTTTTATATCGTTTCCTTCTTTCCTATAATAAGAAAAATGCATATTTAGTTAGTTAGTTAGATGGTTCCACTCACATCGATGGCAAAGCTATCTGCAAAAGTTGATTCACATTTTCATGGCTCAAATTATTCAGATCAATGTTGAGAGTCGCGATTTCAGCTGCCGAAATCTACAATTCAATTTTTCTGGATTATGTATGATTATGGTCAATCTCACATAGAACTGTTGCTGTTTTGAATCGGTTATGTTCACACCTCCATCATGGGTAAGAATTATATGCATCGACGCATCATCCATATGACCATGTTCCTCATCCTCGTCTCTTGGATATTGATTTGCATCACCACCGGCTTCATTCCGTCCGAAATTGTTCCCGAGCGTGTCATGATGAATCATATGATCATGAGAATCTTCTTCAACAACTTCTTCTTGATCGTTTTGTTTGGCTTGTCTTTCCTGGCTGATTGCAACAACAACACTCAACTGTTCCTCTGTTAAATTATTTATATCTTCCATTTCAAATCCAGCTGCGTACATGTCTTCAGATGTAATTTGCACCATGTTCTGAAATGAAATGTATGAAATTTTCAAACTTTTGGATTTAAAAAAACCTCGTATTGCTGATCGCCATCCTCAACGATAAGCTCTCTCTGATCTAAACCATCTGCTTGCTGATCGACGTTTTCTTCGTCATGTTTCAATTCTTCTGCTGATAAAGGAATGCTATGTTGCGCAAGATCATCTTGACTACCAATCGCTTCAAAAATATTATTTTCTTGATGAGTGAAAACCCCTTCTGGAGACGACCTGTAGGTGTGTCAATTAAATGAAACATTCAAAAATAAATGTCGTACCCGGGAATATTTTCTTCTTGCTGTTC</canonical>
            <polymorphic>AGGAGAGAGTAGACGTTTACTATTATCAATATCAGGATTGTGATTTTGATGATGCTGATGATGATGATAGCTCGTAGAAGGTGCTTGATCGAGTTCCTCCCGGTTGTAGGTGTCTTCTTGTTTTATATCGTTTCCTTCTTTCCTATAATAAGAAAAATGCATATTTAGTTAGTTAGTTAGATGGTTCCACTCACATCGATGGCAAAGCTATCTGCAAAAGTTGATTCACATTTTCATGGCTCAAATTATTCAGATCAATGTTGAGAGTCGCGATTTCAGCTGCCGAAATCTACAATTCAATTTTTCTGGATTATGTATGATTATGGTCAATCTCACATAGAACTGTTGCTGTTTTGAATCGGTTATGTTCACACCTCCATCATGGGTAAGAATTATATGCATCGACGCATCATCCATATGACCATGTTCCTCATCCTCGTCTCTTGGATATTGATTTGCATCACCACCGGCTTCATTCCGTCCGAAATTGTTCCCGAGCRTGTCATGATGAATCATATGATCATGAGAATCTTCTTCAACAACTTCTTCTTGATCGTTTTGTTTGGCTTGTCTTTCCTGGCTGATTGCAACAACAACACTCAACTGTTCCTCTGTTAAATTATTTATATCTTCCATTTCAAATCCAGCTGCGTACATGTCTTCAGATGTAATTTGCACCATGTTCTGAAATGAAATGTATGAAATTTTCAAACTTTTGGATTTAAAAAAACCTCGTATTGCTGATCGCCATCCTCAACGATAAGCTCTCTCTGATCTAAACCATCTGCTTGCTGATCGACGTTTTCTTCGTCATGTTTCAATTCTTCTGCTGATAAAGGAATGCTATGTTGCGCAAGATCATCTTGACTACCAATCGCTTCAAAAATATTATTTTCTTGATGAGTGAAAACCCCTTCTGGAGACGACCTGTAGGTGTGTCAATTAAATGAAACATTCAAAAATAAATGTCGTACCCGGGAATATTTTCTTCTTGCTGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>229 107 96 90 79 77 62 42 41 36 36 35 30 29 4 3 2 2</canonical_bands>
                <polymorphic_bands>229 132 107 90 79 77 62 42 41 36 35 30 29 4 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATCATGGGTAAGAATTATATG</pcr_primer_p1>
		<pcr_primer_p2>AATTTAACAGAGGAACAGTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CCATCATGGGTAAGAATTATATGCATCGACGCATCATCCATATGACCATGTTCCTCATCCTCGTCTCTTGGATATTGATTTGCATCACCACCGGCTTCATTCCGTCCGAAATTGTTCCCGAGCGTGTCATGATGAATCATATGATCATGAGAATCTTCTTCAACAACTTCTTCTTGATCGTTTTGTTTGGCTTGTCTTTCCTGGCTGATTGCAACAACAACACTCAACTGTTCCTCTGTTAAATT</canonical_amplicon>
		<polymorphic_amplicon>CCATCATGGGTAAGAATTATATGCATCGACGCATCATCCATATGACCATGTTCCTCATCCTCGTCTCTTGGATATTGATTTGCATCACCACCGGCTTCATTCCGTCCGAAATTGTTCCCGAGCRTGTCATGATGAATCATATGATCATGAGAATCTTCTTCAACAACTTCTTCTTGATCGTTTTGTTTGGCTTGTCTTTCCTGGCTGATTGCAACAACAACACTCAACTGTTCCTCTGTTAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19963</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>326895</contig_pos>
        <strand>+</strand>
        <context>ACAAGACAAA[A/G]CAGGAGATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTGACAATCCGGCAATGGAAACTGATTTATCACTTGAAAACAAGACAAA</left_flank>
        <right_flank>CAGGAGATTTCTCTTAAATTGGAGCAGGAGAAAAGAGGAGTTGAGGAAGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAACAACCCACATTTCTTGATCATGCAAGGTCGCATCACGACAGTATTGAACATGAAGCCAGAAGAAATTCTCGGTATGGTTGAAGAAGCAGCAGGAACCAAAATGTATGATCAGAAAAGAAAAGAGGCCGAAAAGACTCTGTTTCTCAAGGAAGCAAAGCTCAAGGAGATTGACCGAATTTTCGAAGGAAGTATCGATCCGCGCATGGAAAAATTCCGGGAAGATCGGAAGAACATGGTGGAAGTGACACGTCTTGCAAAACTGAAAGAGAATTCTCAACGGAAACTGGGAGCATTTGAATACCATCAATCTGTGGAGCTCAGCAAAAGAGATATGGAACACATGGAATTGGTATCCAATGAAGCCCAAGAGCTTAATCAACGGATTGAACAAGTGGTTGCTGAAATCGGAAAAAAGGGAGACGAACAACAAAATCTGATTGCTCTTCGTGACAATCCGGCAATGGAAACTGATTTATCACTTGAAAACAAGACAAAACAGGAGATTTCTCTTAAATTGGAGCAGGAGAAAAGAGGAGTTGAGGAAGGAATCGTCCGACTAAAAAGCGAAATTGAGCGGACCATTCGACGCATTGAAAATGATGAAAAAGTTCTCGGCTCAAAGCAGGTTGAATTGGAAAACATCAAAAACGACAAAGGCGAAGATATTGACTCCCATGAAGAGAATAAAGCGGTATTAATGTTTCACTTGTTCGTAATCATAATTATACATTTACAGCTTATCACTAAACTCCGCGGTGAGCTCGAAGGAATGTCAAGAGGAACCGTTACGAATGACAAAGGAGAACACGTTTCTCTTGAAACATATATCCAAGAAACTAGAGCACAAGCAGCAGATTTGGACACCAAGGTCAAAACTGCGAATAATCGGTAAAAAATGTACAGAAAAGAAAAATATAAAGAACTGTTTCCAGCCGAGATCGTATTCAAGCAAACCTCAACAGAGCAATGGACAAACTCGCAAGTCTAGCTTCGAAA</canonical>
            <polymorphic>TCAACAACCCACATTTCTTGATCATGCAAGGTCGCATCACGACAGTATTGAACATGAAGCCAGAAGAAATTCTCGGTATGGTTGAAGAAGCAGCAGGAACCAAAATGTATGATCAGAAAAGAAAAGAGGCCGAAAAGACTCTGTTTCTCAAGGAAGCAAAGCTCAAGGAGATTGACCGAATTTTCGAAGGAAGTATCGATCCGCGCATGGAAAAATTCCGGGAAGATCGGAAGAACATGGTGGAAGTGACACGTCTTGCAAAACTGAAAGAGAATTCTCAACGGAAACTGGGAGCATTTGAATACCATCAATCTGTGGAGCTCAGCAAAAGAGATATGGAACACATGGAATTGGTATCCAATGAAGCCCAAGAGCTTAATCAACGGATTGAACAAGTGGTTGCTGAAATCGGAAAAAAGGGAGACGAACAACAAAATCTGATTGCTCTTCGTGACAATCCGGCAATGGAAACTGATTTATCACTTGAAAACAAGACAAARCAGGAGATTTCTCTTAAATTGGAGCAGGAGAAAAGAGGAGTTGAGGAAGGAATCGTCCGACTAAAAAGCGAAATTGAGCGGACCATTCGACGCATTGAAAATGATGAAAAAGTTCTCGGCTCAAAGCAGGTTGAATTGGAAAACATCAAAAACGACAAAGGCGAAGATATTGACTCCCATGAAGAGAATAAAGCGGTATTAATGTTTCACTTGTTCGTAATCATAATTATACATTTACAGCTTATCACTAAACTCCGCGGTGAGCTCGAAGGAATGTCAAGAGGAACCGTTACGAATGACAAAGGAGAACACGTTTCTCTTGAAACATATATCCAAGAAACTAGAGCACAAGCAGCAGATTTGGACACCAAGGTCAAAACTGCGAATAATCGGTAAAAAATGTACAGAAAAGAAAAATATAAAGAACTGTTTCCAGCCGAGATCGTATTCAAGCAAACCTCAACAGAGCAATGGACAAACTCGCAAGTCTAGCTTCGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAGCTTAATCAACGGATTG</pcr_primer_p1>
		<pcr_primer_p2>GAGAACTTTTTCATCATTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGAGCTTAATCAACGGATTGAACAAGTGGTTGCTGAAATCGGAAAAAAGGGAGACGAACAACAAAATCTGATTGCTCTTCGTGACAATCCGGCAATGGAAACTGATTTATCACTTGAAAACAAGACAAAACAGGAGATTTCTCTTAAATTGGAGCAGGAGAAAAGAGGAGTTGAGGAAGGAATCGTCCGACTAAAAAGCGAAATTGAGCGGACCATTCGACGCATTGAAAATGATGAAAAAGTTCTC</canonical_amplicon>
		<polymorphic_amplicon>AAGAGCTTAATCAACGGATTGAACAAGTGGTTGCTGAAATCGGAAAAAAGGGAGACGAACAACAAAATCTGATTGCTCTTCGTGACAATCCGGCAATGGAAACTGATTTATCACTTGAAAACAAGACAAARCAGGAGATTTCTCTTAAATTGGAGCAGGAGAAAAGAGGAGTTGAGGAAGGAATCGTCCGACTAAAAAGCGAAATTGAGCGGACCATTCGACGCATTGAAAATGATGAAAAAGTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19964</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>326798</contig_pos>
        <strand>+</strand>
        <context>CAAGTGGTTG[C/T]TGAAATCGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTATCCAATGAAGCCCAAGAGCTTAATCAACGGATTGAACAAGTGGTTG</left_flank>
        <right_flank>TGAAATCGGAAAAAAGGGAGACGAACAACAAAATCTGATTGCTCTTCGTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGACCGGAAAAAGCTGTTACACCGGATATACGTTGAACGGACATTCTGCAACCACCCAACGGATGATTGACTTCTTCCGTGGCGTCGGACTCAACGTCAACAACCCACATTTCTTGATCATGCAAGGTCGCATCACGACAGTATTGAACATGAAGCCAGAAGAAATTCTCGGTATGGTTGAAGAAGCAGCAGGAACCAAAATGTATGATCAGAAAAGAAAAGAGGCCGAAAAGACTCTGTTTCTCAAGGAAGCAAAGCTCAAGGAGATTGACCGAATTTTCGAAGGAAGTATCGATCCGCGCATGGAAAAATTCCGGGAAGATCGGAAGAACATGGTGGAAGTGACACGTCTTGCAAAACTGAAAGAGAATTCTCAACGGAAACTGGGAGCATTTGAATACCATCAATCTGTGGAGCTCAGCAAAAGAGATATGGAACACATGGAATTGGTATCCAATGAAGCCCAAGAGCTTAATCAACGGATTGAACAAGTGGTTGCTGAAATCGGAAAAAAGGGAGACGAACAACAAAATCTGATTGCTCTTCGTGACAATCCGGCAATGGAAACTGATTTATCACTTGAAAACAAGACAAAACAGGAGATTTCTCTTAAATTGGAGCAGGAGAAAAGAGGAGTTGAGGAAGGAATCGTCCGACTAAAAAGCGAAATTGAGCGGACCATTCGACGCATTGAAAATGATGAAAAAGTTCTCGGCTCAAAGCAGGTTGAATTGGAAAACATCAAAAACGACAAAGGCGAAGATATTGACTCCCATGAAGAGAATAAAGCGGTATTAATGTTTCACTTGTTCGTAATCATAATTATACATTTACAGCTTATCACTAAACTCCGCGGTGAGCTCGAAGGAATGTCAAGAGGAACCGTTACGAATGACAAAGGAGAACACGTTTCTCTTGAAACATATATCCAAGAAACTAGAGCACAAGCAGCAGATTTGGACACCAAGGTCAAAACTGCGAATAATCGGTAAAAAATGT</canonical>
            <polymorphic>CCGACCGGAAAAAGCTGTTACACCGGATATACGTTGAACGGACATTCTGCAACCACCCAACGGATGATTGACTTCTTCCGTGGCGTCGGACTCAACGTCAACAACCCACATTTCTTGATCATGCAAGGTCGCATCACGACAGTATTGAACATGAAGCCAGAAGAAATTCTCGGTATGGTTGAAGAAGCAGCAGGAACCAAAATGTATGATCAGAAAAGAAAAGAGGCCGAAAAGACTCTGTTTCTCAAGGAAGCAAAGCTCAAGGAGATTGACCGAATTTTCGAAGGAAGTATCGATCCGCGCATGGAAAAATTCCGGGAAGATCGGAAGAACATGGTGGAAGTGACACGTCTTGCAAAACTGAAAGAGAATTCTCAACGGAAACTGGGAGCATTTGAATACCATCAATCTGTGGAGCTCAGCAAAAGAGATATGGAACACATGGAATTGGTATCCAATGAAGCCCAAGAGCTTAATCAACGGATTGAACAAGTGGTTGYTGAAATCGGAAAAAAGGGAGACGAACAACAAAATCTGATTGCTCTTCGTGACAATCCGGCAATGGAAACTGATTTATCACTTGAAAACAAGACAAAACAGGAGATTTCTCTTAAATTGGAGCAGGAGAAAAGAGGAGTTGAGGAAGGAATCGTCCGACTAAAAAGCGAAATTGAGCGGACCATTCGACGCATTGAAAATGATGAAAAAGTTCTCGGCTCAAAGCAGGTTGAATTGGAAAACATCAAAAACGACAAAGGCGAAGATATTGACTCCCATGAAGAGAATAAAGCGGTATTAATGTTTCACTTGTTCGTAATCATAATTATACATTTACAGCTTATCACTAAACTCCGCGGTGAGCTCGAAGGAATGTCAAGAGGAACCGTTACGAATGACAAAGGAGAACACGTTTCTCTTGAAACATATATCCAAGAAACTAGAGCACAAGCAGCAGATTTGGACACCAAGGTCAAAACTGCGAATAATCGGTAAAAAATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCATTTGAATACCATCAATCT</pcr_primer_p1>
		<pcr_primer_p2>CTGCTCCAATTTAAGAGAAATC</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>AGCATTTGAATACCATCAATCTGTGGAGCTCAGCAAAAGAGATATGGAACACATGGAATTGGTATCCAATGAAGCCCAAGAGCTTAATCAACGGATTGAACAAGTGGTTGCTGAAATCGGAAAAAAGGGAGACGAACAACAAAATCTGATTGCTCTTCGTGACAATCCGGCAATGGAAACTGATTTATCACTTGAAAACAAGACAAAACAGGAGATTTCTCTTAAATTGGAGCAG</canonical_amplicon>
		<polymorphic_amplicon>AGCATTTGAATACCATCAATCTGTGGAGCTCAGCAAAAGAGATATGGAACACATGGAATTGGTATCCAATGAAGCCCAAGAGCTTAATCAACGGATTGAACAAGTGGTTGYTGAAATCGGAAAAAAGGGAGACGAACAACAAAATCTGATTGCTCTTCGTGACAATCCGGCAATGGAAACTGATTTATCACTTGAAAACAAGACAAAACAGGAGATTTCTCTTAAATTGGAGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19965</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>326762</contig_pos>
        <strand>+</strand>
        <context>TCCAATGAAG[C/T]CCAAGAGCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAGCTCAGCAAAAGAGATATGGAACACATGGAATTGGTATCCAATGAAG</left_flank>
        <right_flank>CCAAGAGCTTAATCAACGGATTGAACAAGTGGTTGCTGAAATCGGAAAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACGAGCTTGTAGTTCAAAGACACATTACTGCGCTTCCGACCGGAAAAAGCTGTTACACCGGATATACGTTGAACGGACATTCTGCAACCACCCAACGGATGATTGACTTCTTCCGTGGCGTCGGACTCAACGTCAACAACCCACATTTCTTGATCATGCAAGGTCGCATCACGACAGTATTGAACATGAAGCCAGAAGAAATTCTCGGTATGGTTGAAGAAGCAGCAGGAACCAAAATGTATGATCAGAAAAGAAAAGAGGCCGAAAAGACTCTGTTTCTCAAGGAAGCAAAGCTCAAGGAGATTGACCGAATTTTCGAAGGAAGTATCGATCCGCGCATGGAAAAATTCCGGGAAGATCGGAAGAACATGGTGGAAGTGACACGTCTTGCAAAACTGAAAGAGAATTCTCAACGGAAACTGGGAGCATTTGAATACCATCAATCTGTGGAGCTCAGCAAAAGAGATATGGAACACATGGAATTGGTATCCAATGAAGCCCAAGAGCTTAATCAACGGATTGAACAAGTGGTTGCTGAAATCGGAAAAAAGGGAGACGAACAACAAAATCTGATTGCTCTTCGTGACAATCCGGCAATGGAAACTGATTTATCACTTGAAAACAAGACAAAACAGGAGATTTCTCTTAAATTGGAGCAGGAGAAAAGAGGAGTTGAGGAAGGAATCGTCCGACTAAAAAGCGAAATTGAGCGGACCATTCGACGCATTGAAAATGATGAAAAAGTTCTCGGCTCAAAGCAGGTTGAATTGGAAAACATCAAAAACGACAAAGGCGAAGATATTGACTCCCATGAAGAGAATAAAGCGGTATTAATGTTTCACTTGTTCGTAATCATAATTATACATTTACAGCTTATCACTAAACTCCGCGGTGAGCTCGAAGGAATGTCAAGAGGAACCGTTACGAATGACAAAGGAGAACACGTTTCTCTTGAAACATATATCCAAGAAACTAGAGCACAAGCAGCAGATTTGGACA</canonical>
            <polymorphic>GACGAGCTTGTAGTTCAAAGACACATTACTGCGCTTCCGACCGGAAAAAGCTGTTACACCGGATATACGTTGAACGGACATTCTGCAACCACCCAACGGATGATTGACTTCTTCCGTGGCGTCGGACTCAACGTCAACAACCCACATTTCTTGATCATGCAAGGTCGCATCACGACAGTATTGAACATGAAGCCAGAAGAAATTCTCGGTATGGTTGAAGAAGCAGCAGGAACCAAAATGTATGATCAGAAAAGAAAAGAGGCCGAAAAGACTCTGTTTCTCAAGGAAGCAAAGCTCAAGGAGATTGACCGAATTTTCGAAGGAAGTATCGATCCGCGCATGGAAAAATTCCGGGAAGATCGGAAGAACATGGTGGAAGTGACACGTCTTGCAAAACTGAAAGAGAATTCTCAACGGAAACTGGGAGCATTTGAATACCATCAATCTGTGGAGCTCAGCAAAAGAGATATGGAACACATGGAATTGGTATCCAATGAAGYCCAAGAGCTTAATCAACGGATTGAACAAGTGGTTGCTGAAATCGGAAAAAAGGGAGACGAACAACAAAATCTGATTGCTCTTCGTGACAATCCGGCAATGGAAACTGATTTATCACTTGAAAACAAGACAAAACAGGAGATTTCTCTTAAATTGGAGCAGGAGAAAAGAGGAGTTGAGGAAGGAATCGTCCGACTAAAAAGCGAAATTGAGCGGACCATTCGACGCATTGAAAATGATGAAAAAGTTCTCGGCTCAAAGCAGGTTGAATTGGAAAACATCAAAAACGACAAAGGCGAAGATATTGACTCCCATGAAGAGAATAAAGCGGTATTAATGTTTCACTTGTTCGTAATCATAATTATACATTTACAGCTTATCACTAAACTCCGCGGTGAGCTCGAAGGAATGTCAAGAGGAACCGTTACGAATGACAAAGGAGAACACGTTTCTCTTGAAACATATATCCAAGAAACTAGAGCACAAGCAGCAGATTTGGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>245 159 142 121 103 70 46 44 32 24 8 6</canonical_bands>
                <polymorphic_bands>245 159 142 121 103 70 54 44 32 24 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCATTTGAATACCATCAATCT</pcr_primer_p1>
		<pcr_primer_p2>CTGCTCCAATTTAAGAGAAATC</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>AGCATTTGAATACCATCAATCTGTGGAGCTCAGCAAAAGAGATATGGAACACATGGAATTGGTATCCAATGAAGCCCAAGAGCTTAATCAACGGATTGAACAAGTGGTTGCTGAAATCGGAAAAAAGGGAGACGAACAACAAAATCTGATTGCTCTTCGTGACAATCCGGCAATGGAAACTGATTTATCACTTGAAAACAAGACAAAACAGGAGATTTCTCTTAAATTGGAGCAG</canonical_amplicon>
		<polymorphic_amplicon>AGCATTTGAATACCATCAATCTGTGGAGCTCAGCAAAAGAGATATGGAACACATGGAATTGGTATCCAATGAAGYCCAAGAGCTTAATCAACGGATTGAACAAGTGGTTGCTGAAATCGGAAAAAAGGGAGACGAACAACAAAATCTGATTGCTCTTCGTGACAATCCGGCAATGGAAACTGATTTATCACTTGAAAACAAGACAAAACAGGAGATTTCTCTTAAATTGGAGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19966</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>398965</contig_pos>
        <strand>+</strand>
        <context>TGCTCCCTCG[C/T]CATTTCCGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAATCAAGTGATTGATGAGTCGAGAATCTTTCTTTGGAATGCTCCCTCG</left_flank>
        <right_flank>CATTTCCGCAGACTCCGAATGAATTATCTTTTTCTAACAAGTGCACGTCT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACTTTTTTGATATCTTGCATAGAAACCGAGATAATTGAGCTGCAACCGCTTCTACTACAGGTGTTATATATGTTTAGCTTCAAAATATCTCCAGAAAGAACAAAGAAATTGAAAATTGTGAACTCGAGTTCGAAATTCTTGAGTATTCTCTGTATTAGAAATGTTATTCAAATTGAAATACCTTCTGAAAATTCTTTGAAATTGAAATTCTTCGAAAATTTATTCTACTGATTCTATGTACTGATTCTACTTATCCACTGTTCATTTTTCTCTTTCTTTTTCTGTTTTTAAAAAAATTCAAGCATAAAAAAGTTTGAGGTATGTGTTGTTCCACTAATTTTAATCTGTCACTCAGCCAGCATTCACGCCTTCTTCTCTTTTTTTCGCATAAATAGAAAGAATAACATACAAAAGAAAAATAGTTCCACTGAAAAATAAAGAATTCATAAGAATCAAGTGATTGATGAGTCGAGAATCTTTCTTTGGAATGCTCCCTCGCCATTTCCGCAGACTCCGAATGAATTATCTTTTTCTAACAAGTGCACGTCTTCAGCAGTGATAATTATAAATATAAGGAGGAAGTGTGTATGCATAATTGATTCAAGCACTTCTTCTTCTTCCTCTTCTTATACTACATCTTCAGAGTCTTGAATTTTCGTCAAATCCATGAGCCGTAATCGAATATTTGTGGTCTCCGGAAACAACGGGTTACCACCACATGCTTTTATCAATTTTCGCTGATTTGGTTTTCCGAAAAAAAAAACTAGAGATCCATGAAAACTAGAGGCTTAGGTGGTGAAAAAACGCTTTGGAGGAGAAAAGGGTTGAAAGTTGAAAATATCAGTTTATGTAGCTGAGATTAAGTAGAACAAGATCAGAAGTGGATACTGGAGTTTCAGGAGGTGAGAGTTTCAGAAGGATAGATCATATAACTAAAATTGATGGAAACTTTATCAAAAAAAATACTCGAACTTTTAGATCCTACGGACCAACAAAACA</canonical>
            <polymorphic>CACTTTTTTGATATCTTGCATAGAAACCGAGATAATTGAGCTGCAACCGCTTCTACTACAGGTGTTATATATGTTTAGCTTCAAAATATCTCCAGAAAGAACAAAGAAATTGAAAATTGTGAACTCGAGTTCGAAATTCTTGAGTATTCTCTGTATTAGAAATGTTATTCAAATTGAAATACCTTCTGAAAATTCTTTGAAATTGAAATTCTTCGAAAATTTATTCTACTGATTCTATGTACTGATTCTACTTATCCACTGTTCATTTTTCTCTTTCTTTTTCTGTTTTTAAAAAAATTCAAGCATAAAAAAGTTTGAGGTATGTGTTGTTCCACTAATTTTAATCTGTCACTCAGCCAGCATTCACGCCTTCTTCTCTTTTTTTCGCATAAATAGAAAGAATAACATACAAAAGAAAAATAGTTCCACTGAAAAATAAAGAATTCATAAGAATCAAGTGATTGATGAGTCGAGAATCTTTCTTTGGAATGCTCCCTCGYCATTTCCGCAGACTCCGAATGAATTATCTTTTTCTAACAAGTGCACGTCTTCAGCAGTGATAATTATAAATATAAGGAGGAAGTGTGTATGCATAATTGATTCAAGCACTTCTTCTTCTTCCTCTTCTTATACTACATCTTCAGAGTCTTGAATTTTCGTCAAATCCATGAGCCGTAATCGAATATTTGTGGTCTCCGGAAACAACGGGTTACCACCACATGCTTTTATCAATTTTCGCTGATTTGGTTTTCCGAAAAAAAAAACTAGAGATCCATGAAAACTAGAGGCTTAGGTGGTGAAAAAACGCTTTGGAGGAGAAAAGGGTTGAAAGTTGAAAATATCAGTTTATGTAGCTGAGATTAAGTAGAACAAGATCAGAAGTGGATACTGGAGTTTCAGGAGGTGAGAGTTTCAGAAGGATAGATCATATAACTAAAATTGATGGAAACTTTATCAAAAAAAATACTCGAACTTTTAGATCCTACGGACCAACAAAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>495 459 46</canonical_bands>
                <polymorphic_bands>954 46</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGAAAAATAGTTCCACTGA</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTCAAGACTCTGAAGATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGAAAAATAGTTCCACTGAAAAATAAAGAATTCATAAGAATCAAGTGATTGATGAGTCGAGAATCTTTCTTTGGAATGCTCCCTCGCCATTTCCGCAGACTCCGAATGAATTATCTTTTTCTAACAAGTGCACGTCTTCAGCAGTGATAATTATAAATATAAGGAGGAAGTGTGTATGCATAATTGATTCAAGCACTTCTTCTTCTTCCTCTTCTTATACTACATCTTCAGAGTCTTGAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGAAAAATAGTTCCACTGAAAAATAAAGAATTCATAAGAATCAAGTGATTGATGAGTCGAGAATCTTTCTTTGGAATGCTCCCTCGYCATTTCCGCAGACTCCGAATGAATTATCTTTTTCTAACAAGTGCACGTCTTCAGCAGTGATAATTATAAATATAAGGAGGAAGTGTGTATGCATAATTGATTCAAGCACTTCTTCTTCTTCCTCTTCTTATACTACATCTTCAGAGTCTTGAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19967</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>401879</contig_pos>
        <strand></strand>
        <context>TTTAGATATG[C/A]CTTTCTGCGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GGAGTATGAACACTCATCGATCTGAAAATAATATTGCAGTTTTAGATATG</left_flank>
        <right_flank>CTTTCTGCGATGGTAAGAAAGTTGAACGTATACCAGATAATCAAGAAAAC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGAAAAGAAGAAAAAAAAGAAGAGAATAATGATAAATTAGACCTGTGGAAGCTCGATTAATTTGGATGATAGACGACACAAGAGGACATCTATGTTGGGCTCCTGGAATGCTCGGTAGAAGCCCTTCAAAAAATTCAAAAAACTAGGAAAAAAAATTGAAGAGAAAGGAGGGAAAGGAGAGAAAAAAGTAGGTTTGAATCGACAATGAATAATTTAGAATCAGAAAAAATAATAGAAAAAGAGGAGGAAAAGTTTTTTGGGGGAATATTGGATAGACAGGTGAAAACGTCGTTCTTCTGTGATCCAAAATATGTAAAAAGCGCTGGCGAAACTCGAAAAAAATACAAAAAAAACGAATGAATGAACTAACCTCTGGAATCGAGAAGATGAAGTTGATGGTGATGATGGTGGTAGAGTTGCTGGTAATTATTGGGTTTTCGAATAATTTGGAGTATGAACACTCATCGATCTGAAAATAATATTGCAGTTTTAGATATGCCTTTCTGCGATGGTAAGAAAGTTGAACGTATACCAGATAATCAAGAAAACAAGATAAAATATTTCGGAAGAAGAGGAAAGACTATAGATTTGAGAATTATTAGTTAAAAAGAATCAACAAGCACATATCTTCATGCTCAGAACTTCTGGTGTAGTTGATCTGCCACAAATACTCTAATAGAAATCTGCCCTTTACGTGCAGTTTGAGCTCAAACATTTCGATTCTTTCAGAAGATATCAAAAATTGGTGAACGGATAAAATGTTGGAAATTTTACGAAAAGCATGTTATCAGTTGAAAAAATTTTGATATCTCGTATAGGAACTGATATAATTAGGCTCAAAAAAAGGTGGTTTTCTATTCAGGAATGTTCGCAACGGAATTCCGAAAATTCAGGAAACTCTGTCCGGAATAATTCCAAAACAAAAATATTTGGAATGAAATTCTGACCGGAATATTTCCGAATGTTTTTTCGGAATTAGAGACTTTTTGCGCTGTCGGA</canonical>
            <polymorphic>AGGAAAAGAAGAAAAAAAAGAAGAGAATAATGATAAATTAGACCTGTGGAAGCTCGATTAATTTGGATGATAGACGACACAAGAGGACATCTATGTTGGGCTCCTGGAATGCTCGGTAGAAGCCCTTCAAAAAATTCAAAAAACTAGGAAAAAAAATTGAAGAGAAAGGAGGGAAAGGAGAGAAAAAAGTAGGTTTGAATCGACAATGAATAATTTAGAATCAGAAAAAATAATAGAAAAAGAGGAGGAAAAGTTTTTTGGGGGAATATTGGATAGACAGGTGAAAACGTCGTTCTTCTGTGATCCAAAATATGTAAAAAGCGCTGGCGAAACTCGAAAAAAATACAAAAAAAACGAATGAATGAACTAACCTCTGGAATCGAGAAGATGAAGTTGATGGTGATGATGGTGGTAGAGTTGCTGGTAATTATTGGGTTTTCGAATAATTTGGAGTATGAACACTCATCGATCTGAAAATAATATTGCAGTTTTAGATATGMCTTTCTGCGATGGTAAGAAAGTTGAACGTATACCAGATAATCAAGAAAACAAGATAAAATATTTCGGAAGAAGAGGAAAGACTATAGATTTGAGAATTATTAGTTAAAAAGAATCAACAAGCACATATCTTCATGCTCAGAACTTCTGGTGTAGTTGATCTGCCACAAATACTCTAATAGAAATCTGCCCTTTACGTGCAGTTTGAGCTCAAACATTTCGATTCTTTCAGAAGATATCAAAAATTGGTGAACGGATAAAATGTTGGAAATTTTACGAAAAGCATGTTATCAGTTGAAAAAATTTTGATATCTCGTATAGGAACTGATATAATTAGGCTCAAAAAAAGGTGGTTTTCTATTCAGGAATGTTCGCAACGGAATTCCGAAAATTCAGGAAACTCTGTCCGGAATAATTCCAAAACAAAAATATTTGGAATGAAATTCTGACCGGAATATTTCCGAATGTTTTTTCGGAATTAGAGACTTTTTGCGCTGTCGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGATGAAGTTGATGGTGAT</pcr_primer_p1>
		<pcr_primer_p2>GAAGATATGTGCTTGTTGATTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAGATGAAGTTGATGGTGATGATGGTGGTAGAGTTGCTGGTAATTATTGGGTTTTCGAATAATTTGGAGTATGAACACTCATCGATCTGAAAATAATATTGCAGTTTTAGATATGCCTTTCTGCGATGGTAAGAAAGTTGAACGTATACCAGATAATCAAGAAAACAAGATAAAATATTTCGGAAGAAGAGGAAAGACTATAGATTTGAGAATTATTAGTTAAAAAGAATCAACAAGCACATATCTTC</canonical_amplicon>
		<polymorphic_amplicon>AGAAGATGAAGTTGATGGTGATGATGGTGGTAGAGTTGCTGGTAATTATTGGGTTTTCGAATAATTTGGAGTATGAACACTCATCGATCTGAAAATAATATTGCAGTTTTAGATATGMCTTTCTGCGATGGTAAGAAAGTTGAACGTATACCAGATAATCAAGAAAACAAGATAAAATATTTCGGAAGAAGAGGAAAGACTATAGATTTGAGAATTATTAGTTAAAAAGAATCAACAAGCACATATCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19968</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>481827</contig_pos>
        <strand>+</strand>
        <context>CCCATCTCTC[A/T]TCGAACGTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTTCTAATATATCACAGCGTCATTCTTTTCCTCTTCAAACCCATCTCTC</left_flank>
        <right_flank>TCGAACGTAACAATATAATTGTTGGTCCTTTAACAGAAGAGGATGCCTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTGTGATAAATAGTTTATCAGTTAACAACTTGCCCTTATCTTTAACAGGAACCGAGATAAAGTCGCACAACGTTGAAAATTAGGAACCCTTCGGTTACAGGTTTCAGAATATCAGAATAAATTCTATTTTTCTCTCCACTTTTTTCAAAATTCTTCCAATCTCAATCAACTCACCTATAACATTAATAAGTTGAGAGACGAGTCGATAATCGCGAAATTCATTCGAAATATCCCGAATCGGCCTGGATAGAGCTCCCTTCGAAAGGTGCCGATTGGCCCAGTCGGTGTAGATCTGAAATATGTAATTTATTTGAATTGTGACAATTTCTTTGCGGATTCAAGACCCTTATTTTGAAATTTTTTAGGTAATCAACCCAAAATCTGTTCTATTTTCCCACGAATCCTCAAGTGCATCAAAATGGTTTCAACACACACAATAATAATGTTGTTTCTAATATATCACAGCGTCATTCTTTTCCTCTTCAAACCCATCTCTCATCGAACGTAACAATATAATTGTTGGTCCTTTAACAGAAGAGGATGCCTCTTCATAATACGGGAACATCTTCCTTCTTGTCCAGCTGTGCGCGAAAAACTAGAGAACAATTGAAAATTAGGAGGAGAAGGAGAAGATGATGATGACTAAGAAAAAGTACTCATGAGACGAAAACTGTTAGGCTTCTGACTTTTTATTCTTGGACAGGACGTGTGAAGGGTTCCCACACTGGCAAGTTTGAGCTTAATTATCTTAATCCCCATACAAGATATCAAAAATGTGTCAACTGACAAAACACTTTTGATATTATGATAAACATTTTATCAGTTGACAACTTTTTTATATCTTTGACAAAAACTGAGGAAAATTGGCACAATGTTAGAGGTTAAGGGGTCCTGCTATTCAAGGTTTTACTTTTGATGCCCGCAAGTGAATCTGAAAGTCAAAAAATCTCAACATCGAAAACAATATTCTAGACAAATGAGGGAACGTATTCTCAGAC</canonical>
            <polymorphic>TAGTGTGATAAATAGTTTATCAGTTAACAACTTGCCCTTATCTTTAACAGGAACCGAGATAAAGTCGCACAACGTTGAAAATTAGGAACCCTTCGGTTACAGGTTTCAGAATATCAGAATAAATTCTATTTTTCTCTCCACTTTTTTCAAAATTCTTCCAATCTCAATCAACTCACCTATAACATTAATAAGTTGAGAGACGAGTCGATAATCGCGAAATTCATTCGAAATATCCCGAATCGGCCTGGATAGAGCTCCCTTCGAAAGGTGCCGATTGGCCCAGTCGGTGTAGATCTGAAATATGTAATTTATTTGAATTGTGACAATTTCTTTGCGGATTCAAGACCCTTATTTTGAAATTTTTTAGGTAATCAACCCAAAATCTGTTCTATTTTCCCACGAATCCTCAAGTGCATCAAAATGGTTTCAACACACACAATAATAATGTTGTTTCTAATATATCACAGCGTCATTCTTTTCCTCTTCAAACCCATCTCTCWTCGAACGTAACAATATAATTGTTGGTCCTTTAACAGAAGAGGATGCCTCTTCATAATACGGGAACATCTTCCTTCTTGTCCAGCTGTGCGCGAAAAACTAGAGAACAATTGAAAATTAGGAGGAGAAGGAGAAGATGATGATGACTAAGAAAAAGTACTCATGAGACGAAAACTGTTAGGCTTCTGACTTTTTATTCTTGGACAGGACGTGTGAAGGGTTCCCACACTGGCAAGTTTGAGCTTAATTATCTTAATCCCCATACAAGATATCAAAAATGTGTCAACTGACAAAACACTTTTGATATTATGATAAACATTTTATCAGTTGACAACTTTTTTATATCTTTGACAAAAACTGAGGAAAATTGGCACAATGTTAGAGGTTAAGGGGTCCTGCTATTCAAGGTTTTACTTTTGATGCCCGCAAGTGAATCTGAAAGTCAAAAAATCTCAACATCGAAAACAATATTCTAGACAAATGAGGGAACGTATTCTCAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTTTCAACACACACAATAATA</pcr_primer_p1>
		<pcr_primer_p2>TTTCGTCTCATGAGTACTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGTTTCAACACACACAATAATAATGTTGTTTCTAATATATCACAGCGTCATTCTTTTCCTCTTCAAACCCATCTCTCATCGAACGTAACAATATAATTGTTGGTCCTTTAACAGAAGAGGATGCCTCTTCATAATACGGGAACATCTTCCTTCTTGTCCAGCTGTGCGCGAAAAACTAGAGAACAATTGAAAATTAGGAGGAGAAGGAGAAGATGATGATGACTAAGAAAAAGTACTCATGAGACGAAA</canonical_amplicon>
		<polymorphic_amplicon>TGGTTTCAACACACACAATAATAATGTTGTTTCTAATATATCACAGCGTCATTCTTTTCCTCTTCAAACCCATCTCTCWTCGAACGTAACAATATAATTGTTGGTCCTTTAACAGAAGAGGATGCCTCTTCATAATACGGGAACATCTTCCTTCTTGTCCAGCTGTGCGCGAAAAACTAGAGAACAATTGAAAATTAGGAGGAGAAGGAGAAGATGATGATGACTAAGAAAAAGTACTCATGAGACGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19969</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>484389</contig_pos>
        <strand>+</strand>
        <context>TTCTAAAGGA[A/G]CATTAGAACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATGGACTTCGAATAGTGTCAATATGAAGATTTTTAATTTTCTAAAGGA</left_flank>
        <right_flank>CATTAGAACCTAAAAATCCTGAAATTTTCGAAATTTCCGAAATACAAAAT</right_flank>
        <qual_score>146</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCACATGCACAACGAGTGAGAGAGGAAGAATCCTTCAATTCATATTAAGCCACGCCCCCTTAGTCTCACACCCAGCTGCGCGGGAAAATAAGAATCAGTGGCACACACCCCAAGGCCTTGACAACACAGTTAGTTCAGAAACAGAGAATTGGAACACCCAAACCCAAATGAGCTAATTATACACTGCTTCTTCCATTCTTTCTGTCTCCACCTCGTTGTGAGCATTAACACTGGATTACGTTGGAGGAGGAAGAAGGGAATGGGACGACTCCTTCCGTTCGGATGGAAGCGGTAAACATGCGGATATGGAGAGATGTGCACTGATTTGAATTAACTGAGAATAAGAGAGGGGGCACCCTTCGAAAATAGAATGGTAATTATGTGGAGAAGAAGTGCGAATTCATAAAATTCGCGGATTTGCATTTTCAATCTTCAAGATGAGAGAGATTGATGGACTTCGAATAGTGTCAATATGAAGATTTTTAATTTTCTAAAGGAACATTAGAACCTAAAAATCCTGAAATTTTCGAAATTTCCGAAATACAAAATTCCGAAAATTCCAGAAATCTAATAACTCCAAGAATCCAAAAAATCGAAAAATTCCAAAATTTTCAAAACTTCCGAAAGTTAAAAAAAAAACTTTGAAAATCCTGAAATTTATTTCCGAAATAGAAAAAAATCTGAAATTTTCGAAAATATCCAAGTTCCAAAAATCCGAAATATTCCGAAAACTCCGAAAGTTCCAAAAAATTCAAAATTTCAAATTATCCTGAGAATTTCAAATATTCCAAAAACTTCGAAAATTAGAGAACATTTTGAAAATTTCGAAAAATCAAAAGAAAATTGAAAATTTTAAACATCCTTAAATATCCCAAAAATCCTGAAAATTTCAAAATTTCAAAAACTTCGGAGAATTTCAAATATTAAGAAAACATCGAAAACTTCAAAAAATTCCGAACTTTCAAGAATGAAAAAATTCCAAAATTTAAAATATTCCGA</canonical>
            <polymorphic>TCCACATGCACAACGAGTGAGAGAGGAAGAATCCTTCAATTCATATTAAGCCACGCCCCCTTAGTCTCACACCCAGCTGCGCGGGAAAATAAGAATCAGTGGCACACACCCCAAGGCCTTGACAACACAGTTAGTTCAGAAACAGAGAATTGGAACACCCAAACCCAAATGAGCTAATTATACACTGCTTCTTCCATTCTTTCTGTCTCCACCTCGTTGTGAGCATTAACACTGGATTACGTTGGAGGAGGAAGAAGGGAATGGGACGACTCCTTCCGTTCGGATGGAAGCGGTAAACATGCGGATATGGAGAGATGTGCACTGATTTGAATTAACTGAGAATAAGAGAGGGGGCACCCTTCGAAAATAGAATGGTAATTATGTGGAGAAGAAGTGCGAATTCATAAAATTCGCGGATTTGCATTTTCAATCTTCAAGATGAGAGAGATTGATGGACTTCGAATAGTGTCAATATGAAGATTTTTAATTTTCTAAAGGARCATTAGAACCTAAAAATCCTGAAATTTTCGAAATTTCCGAAATACAAAATTCCGAAAATTCCAGAAATCTAATAACTCCAAGAATCCAAAAAATCGAAAAATTCCAAAATTTTCAAAACTTCCGAAAGTTAAAAAAAAAACTTTGAAAATCCTGAAATTTATTTCCGAAATAGAAAAAAATCTGAAATTTTCGAAAATATCCAAGTTCCAAAAATCCGAAATATTCCGAAAACTCCGAAAGTTCCAAAAAATTCAAAATTTCAAATTATCCTGAGAATTTCAAATATTCCAAAAACTTCGAAAATTAGAGAACATTTTGAAAATTTCGAAAAATCAAAAGAAAATTGAAAATTTTAAACATCCTTAAATATCCCAAAAATCCTGAAAATTTCAAAATTTCAAAAACTTCGGAGAATTTCAAATATTAAGAAAACATCGAAAACTTCAAAAAATTCCGAACTTTCAAGAATGAAAAAATTCCAAAATTTAAAATATTCCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTGCATTTTCAATCTTCA</pcr_primer_p1>
		<pcr_primer_p2>GAAATAAATTTCAGGATTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATTTGCATTTTCAATCTTCAAGATGAGAGAGATTGATGGACTTCGAATAGTGTCAATATGAAGATTTTTAATTTTCTAAAGGAACATTAGAACCTAAAAATCCTGAAATTTTCGAAATTTCCGAAATACAAAATTCCGAAAATTCCAGAAATCTAATAACTCCAAGAATCCAAAAAATCGAAAAATTCCAAAATTTTCAAAACTTCCGAAAGTTAAAAAAAAAACTTTGAAAATCCTGAAATTTATTTC</canonical_amplicon>
		<polymorphic_amplicon>GATTTGCATTTTCAATCTTCAAGATGAGAGAGATTGATGGACTTCGAATAGTGTCAATATGAAGATTTTTAATTTTCTAAAGGARCATTAGAACCTAAAAATCCTGAAATTTTCGAAATTTCCGAAATACAAAATTCCGAAAATTCCAGAAATCTAATAACTCCAAGAATCCAAAAAATCGAAAAATTCCAAAATTTTCAAAACTTCCGAAAGTTAAAAAAAAAACTTTGAAAATCCTGAAATTTATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19970</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>484026</contig_pos>
        <strand>+</strand>
        <context>ACAGTTAGTT[C/T]AGAAACAGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATAAGAATCAGTGGCACACACCCCAAGGCCTTGACAACACAGTTAGTT</left_flank>
        <right_flank>AGAAACAGAGAATTGGAACACCCAAACCCAAATGAGCTAATTATACACTG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGCAAAGTATAAAGAATCCAGGAATCAACTAGCATCTCTGTGAACGATGGAAAAGTGGGGAACTCATTGCCGAAGAAGCCTCGACTCTGTTCATCGAAGGTGAATTCCCTGGGCGACGAGAGAATGTGTGGGACGAAGAGATTTAGATGAAATGAAGATAAGAATGGAAAAGGAGGAGGAGAAGCGAAATCTTCGTGGAAGAAGAGAAATAGGAGAATTAATTGGTTTGATGGAAGACGACAGGAGCCAGAAGACATCTTCCAGATTGCTATACGAAGTTTTTCAGTAGAGGGATTGCTAACCTTTACCGAATCCAAGTTGCTGGCGGCGGAATTCATCCGCGGAAGAGTATCCATCCTGAATCCACATGCACAACGAGTGAGAGAGGAAGAATCCTTCAATTCATATTAAGCCACGCCCCCTTAGTCTCACACCCAGCTGCGCGGGAAAATAAGAATCAGTGGCACACACCCCAAGGCCTTGACAACACAGTTAGTTCAGAAACAGAGAATTGGAACACCCAAACCCAAATGAGCTAATTATACACTGCTTCTTCCATTCTTTCTGTCTCCACCTCGTTGTGAGCATTAACACTGGATTACGTTGGAGGAGGAAGAAGGGAATGGGACGACTCCTTCCGTTCGGATGGAAGCGGTAAACATGCGGATATGGAGAGATGTGCACTGATTTGAATTAACTGAGAATAAGAGAGGGGGCACCCTTCGAAAATAGAATGGTAATTATGTGGAGAAGAAGTGCGAATTCATAAAATTCGCGGATTTGCATTTTCAATCTTCAAGATGAGAGAGATTGATGGACTTCGAATAGTGTCAATATGAAGATTTTTAATTTTCTAAAGGAACATTAGAACCTAAAAATCCTGAAATTTTCGAAATTTCCGAAATACAAAATTCCGAAAATTCCAGAAATCTAATAACTCCAAGAATCCAAAAAATCGAAAAATTCCAAAATTTTCAAAACTTCCGAAAGTTAAAAAAA</canonical>
            <polymorphic>GTGCAAAGTATAAAGAATCCAGGAATCAACTAGCATCTCTGTGAACGATGGAAAAGTGGGGAACTCATTGCCGAAGAAGCCTCGACTCTGTTCATCGAAGGTGAATTCCCTGGGCGACGAGAGAATGTGTGGGACGAAGAGATTTAGATGAAATGAAGATAAGAATGGAAAAGGAGGAGGAGAAGCGAAATCTTCGTGGAAGAAGAGAAATAGGAGAATTAATTGGTTTGATGGAAGACGACAGGAGCCAGAAGACATCTTCCAGATTGCTATACGAAGTTTTTCAGTAGAGGGATTGCTAACCTTTACCGAATCCAAGTTGCTGGCGGCGGAATTCATCCGCGGAAGAGTATCCATCCTGAATCCACATGCACAACGAGTGAGAGAGGAAGAATCCTTCAATTCATATTAAGCCACGCCCCCTTAGTCTCACACCCAGCTGCGCGGGAAAATAAGAATCAGTGGCACACACCCCAAGGCCTTGACAACACAGTTAGTTYAGAAACAGAGAATTGGAACACCCAAACCCAAATGAGCTAATTATACACTGCTTCTTCCATTCTTTCTGTCTCCACCTCGTTGTGAGCATTAACACTGGATTACGTTGGAGGAGGAAGAAGGGAATGGGACGACTCCTTCCGTTCGGATGGAAGCGGTAAACATGCGGATATGGAGAGATGTGCACTGATTTGAATTAACTGAGAATAAGAGAGGGGGCACCCTTCGAAAATAGAATGGTAATTATGTGGAGAAGAAGTGCGAATTCATAAAATTCGCGGATTTGCATTTTCAATCTTCAAGATGAGAGAGATTGATGGACTTCGAATAGTGTCAATATGAAGATTTTTAATTTTCTAAAGGAACATTAGAACCTAAAAATCCTGAAATTTTCGAAATTTCCGAAATACAAAATTCCGAAAATTCCAGAAATCTAATAACTCCAAGAATCCAAAAAATCGAAAAATTCCAAAATTTTCAAAACTTCCGAAAGTTAAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>501 256 144 70 15 14</canonical_bands>
                <polymorphic_bands>645 256 70 15 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCCATCCTGAATCCACAT</pcr_primer_p1>
		<pcr_primer_p2>ATCCAGTGTTAATGCTCACAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATCCATCCTGAATCCACATGCACAACGAGTGAGAGAGGAAGAATCCTTCAATTCATATTAAGCCACGCCCCCTTAGTCTCACACCCAGCTGCGCGGGAAAATAAGAATCAGTGGCACACACCCCAAGGCCTTGACAACACAGTTAGTTCAGAAACAGAGAATTGGAACACCCAAACCCAAATGAGCTAATTATACACTGCTTCTTCCATTCTTTCTGTCTCCACCTCGTTGTGAGCATTAACACTGGAT</canonical_amplicon>
		<polymorphic_amplicon>TATCCATCCTGAATCCACATGCACAACGAGTGAGAGAGGAAGAATCCTTCAATTCATATTAAGCCACGCCCCCTTAGTCTCACACCCAGCTGCGCGGGAAAATAAGAATCAGTGGCACACACCCCAAGGCCTTGACAACACAGTTAGTTYAGAAACAGAGAATTGGAACACCCAAACCCAAATGAGCTAATTATACACTGCTTCTTCCATTCTTTCTGTCTCCACCTCGTTGTGAGCATTAACACTGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19971</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>483928</contig_pos>
        <strand>+</strand>
        <context>GAATCCTTCA[A/G]TTCATATTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCCATCCTGAATCCACATGCACAACGAGTGAGAGAGGAAGAATCCTTCA</left_flank>
        <right_flank>TTCATATTAAGCCACGCCCCCTTAGTCTCACACCCAGCTGCGCGGGAAAA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAGTAATATACTCATATTCGTGGCTGAAATTGCTGAAGCTAATATTTTAGCATCGCAGTAATTCTGTAATCTTGAAACTTATATTTCAAACCCAAAGTGCAAAGTATAAAGAATCCAGGAATCAACTAGCATCTCTGTGAACGATGGAAAAGTGGGGAACTCATTGCCGAAGAAGCCTCGACTCTGTTCATCGAAGGTGAATTCCCTGGGCGACGAGAGAATGTGTGGGACGAAGAGATTTAGATGAAATGAAGATAAGAATGGAAAAGGAGGAGGAGAAGCGAAATCTTCGTGGAAGAAGAGAAATAGGAGAATTAATTGGTTTGATGGAAGACGACAGGAGCCAGAAGACATCTTCCAGATTGCTATACGAAGTTTTTCAGTAGAGGGATTGCTAACCTTTACCGAATCCAAGTTGCTGGCGGCGGAATTCATCCGCGGAAGAGTATCCATCCTGAATCCACATGCACAACGAGTGAGAGAGGAAGAATCCTTCAATTCATATTAAGCCACGCCCCCTTAGTCTCACACCCAGCTGCGCGGGAAAATAAGAATCAGTGGCACACACCCCAAGGCCTTGACAACACAGTTAGTTCAGAAACAGAGAATTGGAACACCCAAACCCAAATGAGCTAATTATACACTGCTTCTTCCATTCTTTCTGTCTCCACCTCGTTGTGAGCATTAACACTGGATTACGTTGGAGGAGGAAGAAGGGAATGGGACGACTCCTTCCGTTCGGATGGAAGCGGTAAACATGCGGATATGGAGAGATGTGCACTGATTTGAATTAACTGAGAATAAGAGAGGGGGCACCCTTCGAAAATAGAATGGTAATTATGTGGAGAAGAAGTGCGAATTCATAAAATTCGCGGATTTGCATTTTCAATCTTCAAGATGAGAGAGATTGATGGACTTCGAATAGTGTCAATATGAAGATTTTTAATTTTCTAAAGGAACATTAGAACCTAAAAATCCTGAAATTTTCGAAATTTCCG</canonical>
            <polymorphic>AAAAGTAATATACTCATATTCGTGGCTGAAATTGCTGAAGCTAATATTTTAGCATCGCAGTAATTCTGTAATCTTGAAACTTATATTTCAAACCCAAAGTGCAAAGTATAAAGAATCCAGGAATCAACTAGCATCTCTGTGAACGATGGAAAAGTGGGGAACTCATTGCCGAAGAAGCCTCGACTCTGTTCATCGAAGGTGAATTCCCTGGGCGACGAGAGAATGTGTGGGACGAAGAGATTTAGATGAAATGAAGATAAGAATGGAAAAGGAGGAGGAGAAGCGAAATCTTCGTGGAAGAAGAGAAATAGGAGAATTAATTGGTTTGATGGAAGACGACAGGAGCCAGAAGACATCTTCCAGATTGCTATACGAAGTTTTTCAGTAGAGGGATTGCTAACCTTTACCGAATCCAAGTTGCTGGCGGCGGAATTCATCCGCGGAAGAGTATCCATCCTGAATCCACATGCACAACGAGTGAGAGAGGAAGAATCCTTCARTTCATATTAAGCCACGCCCCCTTAGTCTCACACCCAGCTGCGCGGGAAAATAAGAATCAGTGGCACACACCCCAAGGCCTTGACAACACAGTTAGTTCAGAAACAGAGAATTGGAACACCCAAACCCAAATGAGCTAATTATACACTGCTTCTTCCATTCTTTCTGTCTCCACCTCGTTGTGAGCATTAACACTGGATTACGTTGGAGGAGGAAGAAGGGAATGGGACGACTCCTTCCGTTCGGATGGAAGCGGTAAACATGCGGATATGGAGAGATGTGCACTGATTTGAATTAACTGAGAATAAGAGAGGGGGCACCCTTCGAAAATAGAATGGTAATTATGTGGAGAAGAAGTGCGAATTCATAAAATTCGCGGATTTGCATTTTCAATCTTCAAGATGAGAGAGATTGATGGACTTCGAATAGTGTCAATATGAAGATTTTTAATTTTCTAAAGGAACATTAGAACCTAAAAATCCTGAAATTTTCGAAATTTCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>154 140 113 112 110 78 68 47 37 32 29 28 22 9 9 8 4</canonical_bands>
                <polymorphic_bands>178 154 140 113 112 78 47 37 32 29 28 22 9 9 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGCTAACCTTTACCGAATC</pcr_primer_p1>
		<pcr_primer_p2>TATAATTAGCTCATTTGGGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTGCTAACCTTTACCGAATCCAAGTTGCTGGCGGCGGAATTCATCCGCGGAAGAGTATCCATCCTGAATCCACATGCACAACGAGTGAGAGAGGAAGAATCCTTCAATTCATATTAAGCCACGCCCCCTTAGTCTCACACCCAGCTGCGCGGGAAAATAAGAATCAGTGGCACACACCCCAAGGCCTTGACAACACAGTTAGTTCAGAAACAGAGAATTGGAACACCCAAACCCAAATGAGCTAATTATA</canonical_amplicon>
		<polymorphic_amplicon>ATTGCTAACCTTTACCGAATCCAAGTTGCTGGCGGCGGAATTCATCCGCGGAAGAGTATCCATCCTGAATCCACATGCACAACGAGTGAGAGAGGAAGAATCCTTCARTTCATATTAAGCCACGCCCCCTTAGTCTCACACCCAGCTGCGCGGGAAAATAAGAATCAGTGGCACACACCCCAAGGCCTTGACAACACAGTTAGTTCAGAAACAGAGAATTGGAACACCCAAACCCAAATGAGCTAATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19972</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>483916</contig_pos>
        <strand>+</strand>
        <context>GTGAGAGAGG[A/G]AGAATCCTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGCGGAAGAGTATCCATCCTGAATCCACATGCACAACGAGTGAGAGAGG</left_flank>
        <right_flank>AGAATCCTTCAATTCATATTAAGCCACGCCCCCTTAGTCTCACACCCAGC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCGGTTTTAAAAAAGTAATATACTCATATTCGTGGCTGAAATTGCTGAAGCTAATATTTTAGCATCGCAGTAATTCTGTAATCTTGAAACTTATATTTCAAACCCAAAGTGCAAAGTATAAAGAATCCAGGAATCAACTAGCATCTCTGTGAACGATGGAAAAGTGGGGAACTCATTGCCGAAGAAGCCTCGACTCTGTTCATCGAAGGTGAATTCCCTGGGCGACGAGAGAATGTGTGGGACGAAGAGATTTAGATGAAATGAAGATAAGAATGGAAAAGGAGGAGGAGAAGCGAAATCTTCGTGGAAGAAGAGAAATAGGAGAATTAATTGGTTTGATGGAAGACGACAGGAGCCAGAAGACATCTTCCAGATTGCTATACGAAGTTTTTCAGTAGAGGGATTGCTAACCTTTACCGAATCCAAGTTGCTGGCGGCGGAATTCATCCGCGGAAGAGTATCCATCCTGAATCCACATGCACAACGAGTGAGAGAGGAAGAATCCTTCAATTCATATTAAGCCACGCCCCCTTAGTCTCACACCCAGCTGCGCGGGAAAATAAGAATCAGTGGCACACACCCCAAGGCCTTGACAACACAGTTAGTTCAGAAACAGAGAATTGGAACACCCAAACCCAAATGAGCTAATTATACACTGCTTCTTCCATTCTTTCTGTCTCCACCTCGTTGTGAGCATTAACACTGGATTACGTTGGAGGAGGAAGAAGGGAATGGGACGACTCCTTCCGTTCGGATGGAAGCGGTAAACATGCGGATATGGAGAGATGTGCACTGATTTGAATTAACTGAGAATAAGAGAGGGGGCACCCTTCGAAAATAGAATGGTAATTATGTGGAGAAGAAGTGCGAATTCATAAAATTCGCGGATTTGCATTTTCAATCTTCAAGATGAGAGAGATTGATGGACTTCGAATAGTGTCAATATGAAGATTTTTAATTTTCTAAAGGAACATTAGAACCTAAAAATCCTGAAATTT</canonical>
            <polymorphic>ACTCGGTTTTAAAAAAGTAATATACTCATATTCGTGGCTGAAATTGCTGAAGCTAATATTTTAGCATCGCAGTAATTCTGTAATCTTGAAACTTATATTTCAAACCCAAAGTGCAAAGTATAAAGAATCCAGGAATCAACTAGCATCTCTGTGAACGATGGAAAAGTGGGGAACTCATTGCCGAAGAAGCCTCGACTCTGTTCATCGAAGGTGAATTCCCTGGGCGACGAGAGAATGTGTGGGACGAAGAGATTTAGATGAAATGAAGATAAGAATGGAAAAGGAGGAGGAGAAGCGAAATCTTCGTGGAAGAAGAGAAATAGGAGAATTAATTGGTTTGATGGAAGACGACAGGAGCCAGAAGACATCTTCCAGATTGCTATACGAAGTTTTTCAGTAGAGGGATTGCTAACCTTTACCGAATCCAAGTTGCTGGCGGCGGAATTCATCCGCGGAAGAGTATCCATCCTGAATCCACATGCACAACGAGTGAGAGAGGRAGAATCCTTCAATTCATATTAAGCCACGCCCCCTTAGTCTCACACCCAGCTGCGCGGGAAAATAAGAATCAGTGGCACACACCCCAAGGCCTTGACAACACAGTTAGTTCAGAAACAGAGAATTGGAACACCCAAACCCAAATGAGCTAATTATACACTGCTTCTTCCATTCTTTCTGTCTCCACCTCGTTGTGAGCATTAACACTGGATTACGTTGGAGGAGGAAGAAGGGAATGGGACGACTCCTTCCGTTCGGATGGAAGCGGTAAACATGCGGATATGGAGAGATGTGCACTGATTTGAATTAACTGAGAATAAGAGAGGGGGCACCCTTCGAAAATAGAATGGTAATTATGTGGAGAAGAAGTGCGAATTCATAAAATTCGCGGATTTGCATTTTCAATCTTCAAGATGAGAGAGATTGATGGACTTCGAATAGTGTCAATATGAAGATTTTTAATTTTCTAAAGGAACATTAGAACCTAAAAATCCTGAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGCTAACCTTTACCGAATC</pcr_primer_p1>
		<pcr_primer_p2>TATAATTAGCTCATTTGGGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTGCTAACCTTTACCGAATCCAAGTTGCTGGCGGCGGAATTCATCCGCGGAAGAGTATCCATCCTGAATCCACATGCACAACGAGTGAGAGAGGAAGAATCCTTCAATTCATATTAAGCCACGCCCCCTTAGTCTCACACCCAGCTGCGCGGGAAAATAAGAATCAGTGGCACACACCCCAAGGCCTTGACAACACAGTTAGTTCAGAAACAGAGAATTGGAACACCCAAACCCAAATGAGCTAATTATA</canonical_amplicon>
		<polymorphic_amplicon>ATTGCTAACCTTTACCGAATCCAAGTTGCTGGCGGCGGAATTCATCCGCGGAAGAGTATCCATCCTGAATCCACATGCACAACGAGTGAGAGAGGRAGAATCCTTCAATTCATATTAAGCCACGCCCCCTTAGTCTCACACCCAGCTGCGCGGGAAAATAAGAATCAGTGGCACACACCCCAAGGCCTTGACAACACAGTTAGTTCAGAAACAGAGAATTGGAACACCCAAACCCAAATGAGCTAATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19974</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>487182</contig_pos>
        <strand>+</strand>
        <context>AAATATCGTT[A/G]GAAAAAATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCTGAAGAATTAGAAGACGTTCAGATGATATGGAAAGAAAATATCGTT</left_flank>
        <right_flank>GAAAAAATAACGGATAGAAACTGGGAGACACGAAAAAAGAAGAAGAAGAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGAATGAAACCATTCATACCAAAATTCCTACTTGCCCATTTTTATTCCGGTTCCCAAAATCGTTATTTTTTGTCCTCAAATTTTACCAAATCCAAAAACTTCTCCTACAAAACTCCTGACCGATTCTTCATCCAACATCACTTTTTTCCCAAGTATCCCTTCGTCAAAAAGAAAAAAACCATCATCCATCAACCGTGTGTTGCCGTTTCTTTTTTCCTTTCCGGAATCCGACTTTTCTTGAAAGGAAACTTCTAAAAAAAAGTGGGTGCTCTCGGTTTCCCAAGAGGATTTCAACTCGGGACCCATTTTAGGATGTTTTGTGTAGCACTCATAAAATGAGTACATTTGCATAATCTGTGTGAAGAACACAAGACACTCACTGGAATCAGCTCAACATTTGACGTCGTCATTTCATTGGCGTCGGAGACAACATTTCTACTGTTCGGAGAATCTGAAGAATTAGAAGACGTTCAGATGATATGGAAAGAAAATATCGTTGGAAAAAATAACGGATAGAAACTGGGAGACACGAAAAAAGAAGAAGAAGAAGTGTGAATAAAAGGCATCCGTGCAAAATGTGCTAATTCCATTATACGAGACGAGAAGAAGATTAAACAAACATGGAAAAACGAGACGCACACACCGATCATCGTCACATTGTTGTGTGAAGATTATAGCTGTTTGGAAGAGGATGAAAAACTATATAACACCTTCCCGAAAATGGGATACACATTATATTCTCAAGTTTGAAGATATCACACATAAAGCTGGATGACGGTAAAACCTCTAATAGAAGGGCCCCTAGCTTTAACATTGAGCCAATTTATCTCGGTTCCTGTCAAAGCTATGAAAAAATGTCAACTGATAAATTGCTTAATATAATAACGCAAATGTTTTGTCAGTTGACAGATTGTTGTTATAGCAATCAAGATAATTAAGGTCAAACTTGACAGTGTGTGGGCCCTTCTTTTACAGGTTTTACAAAAACTAAAGAGTGGG</canonical>
            <polymorphic>CCGAATGAAACCATTCATACCAAAATTCCTACTTGCCCATTTTTATTCCGGTTCCCAAAATCGTTATTTTTTGTCCTCAAATTTTACCAAATCCAAAAACTTCTCCTACAAAACTCCTGACCGATTCTTCATCCAACATCACTTTTTTCCCAAGTATCCCTTCGTCAAAAAGAAAAAAACCATCATCCATCAACCGTGTGTTGCCGTTTCTTTTTTCCTTTCCGGAATCCGACTTTTCTTGAAAGGAAACTTCTAAAAAAAAGTGGGTGCTCTCGGTTTCCCAAGAGGATTTCAACTCGGGACCCATTTTAGGATGTTTTGTGTAGCACTCATAAAATGAGTACATTTGCATAATCTGTGTGAAGAACACAAGACACTCACTGGAATCAGCTCAACATTTGACGTCGTCATTTCATTGGCGTCGGAGACAACATTTCTACTGTTCGGAGAATCTGAAGAATTAGAAGACGTTCAGATGATATGGAAAGAAAATATCGTTRGAAAAAATAACGGATAGAAACTGGGAGACACGAAAAAAGAAGAAGAAGAAGTGTGAATAAAAGGCATCCGTGCAAAATGTGCTAATTCCATTATACGAGACGAGAAGAAGATTAAACAAACATGGAAAAACGAGACGCACACACCGATCATCGTCACATTGTTGTGTGAAGATTATAGCTGTTTGGAAGAGGATGAAAAACTATATAACACCTTCCCGAAAATGGGATACACATTATATTCTCAAGTTTGAAGATATCACACATAAAGCTGGATGACGGTAAAACCTCTAATAGAAGGGCCCCTAGCTTTAACATTGAGCCAATTTATCTCGGTTCCTGTCAAAGCTATGAAAAAATGTCAACTGATAAATTGCTTAATATAATAACGCAAATGTTTTGTCAGTTGACAGATTGTTGTTATAGCAATCAAGATAATTAAGGTCAAACTTGACAGTGTGTGGGCCCTTCTTTTACAGGTTTTACAAAAACTAAAGAGTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATAATCTGTGTGAAGAACACAA</pcr_primer_p1>
		<pcr_primer_p2>CTCGTATAATGGAATTAGCACAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATAATCTGTGTGAAGAACACAAGACACTCACTGGAATCAGCTCAACATTTGACGTCGTCATTTCATTGGCGTCGGAGACAACATTTCTACTGTTCGGAGAATCTGAAGAATTAGAAGACGTTCAGATGATATGGAAAGAAAATATCGTTGGAAAAAATAACGGATAGAAACTGGGAGACACGAAAAAAGAAGAAGAAGAAGTGTGAATAAAAGGCATCCGTGCAAAATGTGCTAATTCCATTATACGAG</canonical_amplicon>
		<polymorphic_amplicon>CATAATCTGTGTGAAGAACACAAGACACTCACTGGAATCAGCTCAACATTTGACGTCGTCATTTCATTGGCGTCGGAGACAACATTTCTACTGTTCGGAGAATCTGAAGAATTAGAAGACGTTCAGATGATATGGAAAGAAAATATCGTTRGAAAAAATAACGGATAGAAACTGGGAGACACGAAAAAAGAAGAAGAAGAAGTGTGAATAAAAGGCATCCGTGCAAAATGTGCTAATTCCATTATACGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19975</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>487109</contig_pos>
        <strand>+</strand>
        <context>TGGCGTCGGA[C/G]ACAACATTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTCACTGGAATCAGCTCAACATTTGACGTCGTCATTTCATTGGCGTCGGA</left_flank>
        <right_flank>ACAACATTTCTACTGTTCGGAGAATCTGAAGAATTAGAAGACGTTCAGAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTACAGGAAATGAGGTATGTAGGCACTAAATAGACAGTTATCATTAGAGTGTCTACGGTATTTTGCTAATTTCCGAATGAAACCATTCATACCAAAATTCCTACTTGCCCATTTTTATTCCGGTTCCCAAAATCGTTATTTTTTGTCCTCAAATTTTACCAAATCCAAAAACTTCTCCTACAAAACTCCTGACCGATTCTTCATCCAACATCACTTTTTTCCCAAGTATCCCTTCGTCAAAAAGAAAAAAACCATCATCCATCAACCGTGTGTTGCCGTTTCTTTTTTCCTTTCCGGAATCCGACTTTTCTTGAAAGGAAACTTCTAAAAAAAAGTGGGTGCTCTCGGTTTCCCAAGAGGATTTCAACTCGGGACCCATTTTAGGATGTTTTGTGTAGCACTCATAAAATGAGTACATTTGCATAATCTGTGTGAAGAACACAAGACACTCACTGGAATCAGCTCAACATTTGACGTCGTCATTTCATTGGCGTCGGAGACAACATTTCTACTGTTCGGAGAATCTGAAGAATTAGAAGACGTTCAGATGATATGGAAAGAAAATATCGTTGGAAAAAATAACGGATAGAAACTGGGAGACACGAAAAAAGAAGAAGAAGAAGTGTGAATAAAAGGCATCCGTGCAAAATGTGCTAATTCCATTATACGAGACGAGAAGAAGATTAAACAAACATGGAAAAACGAGACGCACACACCGATCATCGTCACATTGTTGTGTGAAGATTATAGCTGTTTGGAAGAGGATGAAAAACTATATAACACCTTCCCGAAAATGGGATACACATTATATTCTCAAGTTTGAAGATATCACACATAAAGCTGGATGACGGTAAAACCTCTAATAGAAGGGCCCCTAGCTTTAACATTGAGCCAATTTATCTCGGTTCCTGTCAAAGCTATGAAAAAATGTCAACTGATAAATTGCTTAATATAATAACGCAAATGTTTTGTCAGTTGACAGATTGTTGTTATAGCAAT</canonical>
            <polymorphic>TTTACAGGAAATGAGGTATGTAGGCACTAAATAGACAGTTATCATTAGAGTGTCTACGGTATTTTGCTAATTTCCGAATGAAACCATTCATACCAAAATTCCTACTTGCCCATTTTTATTCCGGTTCCCAAAATCGTTATTTTTTGTCCTCAAATTTTACCAAATCCAAAAACTTCTCCTACAAAACTCCTGACCGATTCTTCATCCAACATCACTTTTTTCCCAAGTATCCCTTCGTCAAAAAGAAAAAAACCATCATCCATCAACCGTGTGTTGCCGTTTCTTTTTTCCTTTCCGGAATCCGACTTTTCTTGAAAGGAAACTTCTAAAAAAAAGTGGGTGCTCTCGGTTTCCCAAGAGGATTTCAACTCGGGACCCATTTTAGGATGTTTTGTGTAGCACTCATAAAATGAGTACATTTGCATAATCTGTGTGAAGAACACAAGACACTCACTGGAATCAGCTCAACATTTGACGTCGTCATTTCATTGGCGTCGGASACAACATTTCTACTGTTCGGAGAATCTGAAGAATTAGAAGACGTTCAGATGATATGGAAAGAAAATATCGTTGGAAAAAATAACGGATAGAAACTGGGAGACACGAAAAAAGAAGAAGAAGAAGTGTGAATAAAAGGCATCCGTGCAAAATGTGCTAATTCCATTATACGAGACGAGAAGAAGATTAAACAAACATGGAAAAACGAGACGCACACACCGATCATCGTCACATTGTTGTGTGAAGATTATAGCTGTTTGGAAGAGGATGAAAAACTATATAACACCTTCCCGAAAATGGGATACACATTATATTCTCAAGTTTGAAGATATCACACATAAAGCTGGATGACGGTAAAACCTCTAATAGAAGGGCCCCTAGCTTTAACATTGAGCCAATTTATCTCGGTTCCTGTCAAAGCTATGAAAAAATGTCAACTGATAAATTGCTTAATATAATAACGCAAATGTTTTGTCAGTTGACAGATTGTTGTTATAGCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATAATCTGTGTGAAGAACACAA</pcr_primer_p1>
		<pcr_primer_p2>CTCGTATAATGGAATTAGCACAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATAATCTGTGTGAAGAACACAAGACACTCACTGGAATCAGCTCAACATTTGACGTCGTCATTTCATTGGCGTCGGAGACAACATTTCTACTGTTCGGAGAATCTGAAGAATTAGAAGACGTTCAGATGATATGGAAAGAAAATATCGTTGGAAAAAATAACGGATAGAAACTGGGAGACACGAAAAAAGAAGAAGAAGAAGTGTGAATAAAAGGCATCCGTGCAAAATGTGCTAATTCCATTATACGAG</canonical_amplicon>
		<polymorphic_amplicon>CATAATCTGTGTGAAGAACACAAGACACTCACTGGAATCAGCTCAACATTTGACGTCGTCATTTCATTGGCGTCGGASACAACATTTCTACTGTTCGGAGAATCTGAAGAATTAGAAGACGTTCAGATGATATGGAAAGAAAATATCGTTGGAAAAAATAACGGATAGAAACTGGGAGACACGAAAAAAGAAGAAGAAGAAGTGTGAATAAAAGGCATCCGTGCAAAATGTGCTAATTCCATTATACGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19976</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>487076</contig_pos>
        <strand>+</strand>
        <context>GRATCAGCTC[A/T]ACATTTGACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATTTGCATAATCTGTGTGAAGAACACAAGACACTCACTGGAATCAGCTC</left_flank>
        <right_flank>ACATTTGACGTCGTCATTTCATTGGCGTCGGAGACAACATTTCTACTGTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAATCGATCAGTTGATCCCTTTTCAATATTTTTTACAGGAAATGAGGTATGTAGGCACTAAATAGACAGTTATCATTAGAGTGTCTACGGTATTTTGCTAATTTCCGAATGAAACCATTCATACCAAAATTCCTACTTGCCCATTTTTATTCCGGTTCCCAAAATCGTTATTTTTTGTCCTCAAATTTTACCAAATCCAAAAACTTCTCCTACAAAACTCCTGACCGATTCTTCATCCAACATCACTTTTTTCCCAAGTATCCCTTCGTCAAAAAGAAAAAAACCATCATCCATCAACCGTGTGTTGCCGTTTCTTTTTTCCTTTCCGGAATCCGACTTTTCTTGAAAGGAAACTTCTAAAAAAAAGTGGGTGCTCTCGGTTTCCCAAGAGGATTTCAACTCGGGACCCATTTTAGGATGTTTTGTGTAGCACTCATAAAATGAGTACATTTGCATAATCTGTGTGAAGAACACAAGACACTCACTGGAATCAGCTCAACATTTGACGTCGTCATTTCATTGGCGTCGGAGACAACATTTCTACTGTTCGGAGAATCTGAAGAATTAGAAGACGTTCAGATGATATGGAAAGAAAATATCGTTGGAAAAAATAACGGATAGAAACTGGGAGACACGAAAAAAGAAGAAGAAGAAGTGTGAATAAAAGGCATCCGTGCAAAATGTGCTAATTCCATTATACGAGACGAGAAGAAGATTAAACAAACATGGAAAAACGAGACGCACACACCGATCATCGTCACATTGTTGTGTGAAGATTATAGCTGTTTGGAAGAGGATGAAAAACTATATAACACCTTCCCGAAAATGGGATACACATTATATTCTCAAGTTTGAAGATATCACACATAAAGCTGGATGACGGTAAAACCTCTAATAGAAGGGCCCCTAGCTTTAACATTGAGCCAATTTATCTCGGTTCCTGTCAAAGCTATGAAAAAATGTCAACTGATAAATTGCTTAATATAATAACGCAAATG</canonical>
            <polymorphic>AAGAATCGATCAGTTGATCCCTTTTCAATATTTTTTACAGGAAATGAGGTATGTAGGCACTAAATAGACAGTTATCATTAGAGTGTCTACGGTATTTTGCTAATTTCCGAATGAAACCATTCATACCAAAATTCCTACTTGCCCATTTTTATTCCGGTTCCCAAAATCGTTATTTTTTGTCCTCAAATTTTACCAAATCCAAAAACTTCTCCTACAAAACTCCTGACCGATTCTTCATCCAACATCACTTTTTTCCCAAGTATCCCTTCGTCAAAAAGAAAAAAACCATCATCCATCAACCGTGTGTTGCCGTTTCTTTTTTCCTTTCCGGAATCCGACTTTTCTTGAAAGGAAACTTCTAAAAAAAAGTGGGTGCTCTCGGTTTCCCAAGAGGATTTCAACTCGGGACCCATTTTAGGATGTTTTGTGTAGCACTCATAAAATGAGTACATTTGCATAATCTGTGTGAAGAACACAAGACACTCACTGGAATCAGCTCWACATTTGACGTCGTCATTTCATTGGCGTCGGAGACAACATTTCTACTGTTCGGAGAATCTGAAGAATTAGAAGACGTTCAGATGATATGGAAAGAAAATATCGTTGGAAAAAATAACGGATAGAAACTGGGAGACACGAAAAAAGAAGAAGAAGAAGTGTGAATAAAAGGCATCCGTGCAAAATGTGCTAATTCCATTATACGAGACGAGAAGAAGATTAAACAAACATGGAAAAACGAGACGCACACACCGATCATCGTCACATTGTTGTGTGAAGATTATAGCTGTTTGGAAGAGGATGAAAAACTATATAACACCTTCCCGAAAATGGGATACACATTATATTCTCAAGTTTGAAGATATCACACATAAAGCTGGATGACGGTAAAACCTCTAATAGAAGGGCCCCTAGCTTTAACATTGAGCCAATTTATCTCGGTTCCTGTCAAAGCTATGAAAAAATGTCAACTGATAAATTGCTTAATATAATAACGCAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTTCTTGAAAGGAAACTTCT</pcr_primer_p1>
		<pcr_primer_p2>TCATCTGAACGTCTTCTAATTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACTTTTCTTGAAAGGAAACTTCTAAAAAAAAGTGGGTGCTCTCGGTTTCCCAAGAGGATTTCAACTCGGGACCCATTTTAGGATGTTTTGTGTAGCACTCATAAAATGAGTACATTTGCATAATCTGTGTGAAGAACACAAGACACTCACTGGAATCAGCTCAACATTTGACGTCGTCATTTCATTGGCGTCGGAGACAACATTTCTACTGTTCGGAGAATCTGAAGAATTAGAAGACGTTCAGATGA</canonical_amplicon>
		<polymorphic_amplicon>ACTTTTCTTGAAAGGAAACTTCTAAAAAAAAGTGGGTGCTCTCGGTTTCCCAAGAGGATTTCAACTCGGGACCCATTTTAGGATGTTTTGTGTAGCACTCATAAAATGAGTACATTTGCATAATCTGTGTGAAGAACACAAGACACTCACTGGAATCAGCTCWACATTTGACGTCGTCATTTCATTGGCGTCGGAGACAACATTTCTACTGTTCGGAGAATCTGAAGAATTAGAAGACGTTCAGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19977</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>487067</contig_pos>
        <strand>+</strand>
        <context>CACTCACTGG[A/G]ATCAGCTCWA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATGAGTACATTTGCATAATCTGTGTGAAGAACACAAGACACTCACTGG</left_flank>
        <right_flank>ATCAGCTCAACATTTGACGTCGTCATTTCATTGGCGTCGGAGACAACATT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTATGAAGAAGAATCGATCAGTTGATCCCTTTTCAATATTTTTTACAGGAAATGAGGTATGTAGGCACTAAATAGACAGTTATCATTAGAGTGTCTACGGTATTTTGCTAATTTCCGAATGAAACCATTCATACCAAAATTCCTACTTGCCCATTTTTATTCCGGTTCCCAAAATCGTTATTTTTTGTCCTCAAATTTTACCAAATCCAAAAACTTCTCCTACAAAACTCCTGACCGATTCTTCATCCAACATCACTTTTTTCCCAAGTATCCCTTCGTCAAAAAGAAAAAAACCATCATCCATCAACCGTGTGTTGCCGTTTCTTTTTTCCTTTCCGGAATCCGACTTTTCTTGAAAGGAAACTTCTAAAAAAAAGTGGGTGCTCTCGGTTTCCCAAGAGGATTTCAACTCGGGACCCATTTTAGGATGTTTTGTGTAGCACTCATAAAATGAGTACATTTGCATAATCTGTGTGAAGAACACAAGACACTCACTGGAATCAGCTCAACATTTGACGTCGTCATTTCATTGGCGTCGGAGACAACATTTCTACTGTTCGGAGAATCTGAAGAATTAGAAGACGTTCAGATGATATGGAAAGAAAATATCGTTGGAAAAAATAACGGATAGAAACTGGGAGACACGAAAAAAGAAGAAGAAGAAGTGTGAATAAAAGGCATCCGTGCAAAATGTGCTAATTCCATTATACGAGACGAGAAGAAGATTAAACAAACATGGAAAAACGAGACGCACACACCGATCATCGTCACATTGTTGTGTGAAGATTATAGCTGTTTGGAAGAGGATGAAAAACTATATAACACCTTCCCGAAAATGGGATACACATTATATTCTCAAGTTTGAAGATATCACACATAAAGCTGGATGACGGTAAAACCTCTAATAGAAGGGCCCCTAGCTTTAACATTGAGCCAATTTATCTCGGTTCCTGTCAAAGCTATGAAAAAATGTCAACTGATAAATTGCTTAATATAATA</canonical>
            <polymorphic>TTTATGAAGAAGAATCGATCAGTTGATCCCTTTTCAATATTTTTTACAGGAAATGAGGTATGTAGGCACTAAATAGACAGTTATCATTAGAGTGTCTACGGTATTTTGCTAATTTCCGAATGAAACCATTCATACCAAAATTCCTACTTGCCCATTTTTATTCCGGTTCCCAAAATCGTTATTTTTTGTCCTCAAATTTTACCAAATCCAAAAACTTCTCCTACAAAACTCCTGACCGATTCTTCATCCAACATCACTTTTTTCCCAAGTATCCCTTCGTCAAAAAGAAAAAAACCATCATCCATCAACCGTGTGTTGCCGTTTCTTTTTTCCTTTCCGGAATCCGACTTTTCTTGAAAGGAAACTTCTAAAAAAAAGTGGGTGCTCTCGGTTTCCCAAGAGGATTTCAACTCGGGACCCATTTTAGGATGTTTTGTGTAGCACTCATAAAATGAGTACATTTGCATAATCTGTGTGAAGAACACAAGACACTCACTGGRATCAGCTCAACATTTGACGTCGTCATTTCATTGGCGTCGGAGACAACATTTCTACTGTTCGGAGAATCTGAAGAATTAGAAGACGTTCAGATGATATGGAAAGAAAATATCGTTGGAAAAAATAACGGATAGAAACTGGGAGACACGAAAAAAGAAGAAGAAGAAGTGTGAATAAAAGGCATCCGTGCAAAATGTGCTAATTCCATTATACGAGACGAGAAGAAGATTAAACAAACATGGAAAAACGAGACGCACACACCGATCATCGTCACATTGTTGTGTGAAGATTATAGCTGTTTGGAAGAGGATGAAAAACTATATAACACCTTCCCGAAAATGGGATACACATTATATTCTCAAGTTTGAAGATATCACACATAAAGCTGGATGACGGTAAAACCTCTAATAGAAGGGCCCCTAGCTTTAACATTGAGCCAATTTATCTCGGTTCCTGTCAAAGCTATGAAAAAATGTCAACTGATAAATTGCTTAATATAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>436 226 159 102 65 12</canonical_bands>
                <polymorphic_bands>436 226 224 102 12</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>436 226 159 102 65 12</canonical_bands>
                <polymorphic_bands>436 226 224 102 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTTTCTTGAAAGGAAACTTCT</pcr_primer_p1>
		<pcr_primer_p2>TCATCTGAACGTCTTCTAATTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACTTTTCTTGAAAGGAAACTTCTAAAAAAAAGTGGGTGCTCTCGGTTTCCCAAGAGGATTTCAACTCGGGACCCATTTTAGGATGTTTTGTGTAGCACTCATAAAATGAGTACATTTGCATAATCTGTGTGAAGAACACAAGACACTCACTGGAATCAGCTCAACATTTGACGTCGTCATTTCATTGGCGTCGGAGACAACATTTCTACTGTTCGGAGAATCTGAAGAATTAGAAGACGTTCAGATGA</canonical_amplicon>
		<polymorphic_amplicon>ACTTTTCTTGAAAGGAAACTTCTAAAAAAAAGTGGGTGCTCTCGGTTTCCCAAGAGGATTTCAACTCGGGACCCATTTTAGGATGTTTTGTGTAGCACTCATAAAATGAGTACATTTGCATAATCTGTGTGAAGAACACAAGACACTCACTGGRATCAGCTCAACATTTGACGTCGTCATTTCATTGGCGTCGGAGACAACATTTCTACTGTTCGGAGAATCTGAAGAATTAGAAGACGTTCAGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19978</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>486975</contig_pos>
        <strand></strand>
        <context>AAGAGGATTT[C/T]AACTCGGGAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGGAAACTTCTAAAAAAAAGTGGGTGCTCTCGGTTTCCCAAGAGGATTT</left_flank>
        <right_flank>AACTCGGGACCCATTTTAGGATGTTTTGTGTAGCACTCATAAAATGAGTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAGCCCACCAGAAACTCCAACTTTGAGCTAGGAAATCTAGATTTCTGGGAAAGATATCACAAATGTGTAAACTATTAAAATATTGGTGATTTTATGAAGAAGAATCGATCAGTTGATCCCTTTTCAATATTTTTTACAGGAAATGAGGTATGTAGGCACTAAATAGACAGTTATCATTAGAGTGTCTACGGTATTTTGCTAATTTCCGAATGAAACCATTCATACCAAAATTCCTACTTGCCCATTTTTATTCCGGTTCCCAAAATCGTTATTTTTTGTCCTCAAATTTTACCAAATCCAAAAACTTCTCCTACAAAACTCCTGACCGATTCTTCATCCAACATCACTTTTTTCCCAAGTATCCCTTCGTCAAAAAGAAAAAAACCATCATCCATCAACCGTGTGTTGCCGTTTCTTTTTTCCTTTCCGGAATCCGACTTTTCTTGAAAGGAAACTTCTAAAAAAAAGTGGGTGCTCTCGGTTTCCCAAGAGGATTTCAACTCGGGACCCATTTTAGGATGTTTTGTGTAGCACTCATAAAATGAGTACATTTGCATAATCTGTGTGAAGAACACAAGACACTCACTGGAATCAGCTCAACATTTGACGTCGTCATTTCATTGGCGTCGGAGACAACATTTCTACTGTTCGGAGAATCTGAAGAATTAGAAGACGTTCAGATGATATGGAAAGAAAATATCGTTGGAAAAAATAACGGATAGAAACTGGGAGACACGAAAAAAGAAGAAGAAGAAGTGTGAATAAAAGGCATCCGTGCAAAATGTGCTAATTCCATTATACGAGACGAGAAGAAGATTAAACAAACATGGAAAAACGAGACGCACACACCGATCATCGTCACATTGTTGTGTGAAGATTATAGCTGTTTGGAAGAGGATGAAAAACTATATAACACCTTCCCGAAAATGGGATACACATTATATTCTCAAGTTTGAAGATATCACACATAAAGCTGGATGACGGTAAAACCTCTAATA</canonical>
            <polymorphic>AGAAGCCCACCAGAAACTCCAACTTTGAGCTAGGAAATCTAGATTTCTGGGAAAGATATCACAAATGTGTAAACTATTAAAATATTGGTGATTTTATGAAGAAGAATCGATCAGTTGATCCCTTTTCAATATTTTTTACAGGAAATGAGGTATGTAGGCACTAAATAGACAGTTATCATTAGAGTGTCTACGGTATTTTGCTAATTTCCGAATGAAACCATTCATACCAAAATTCCTACTTGCCCATTTTTATTCCGGTTCCCAAAATCGTTATTTTTTGTCCTCAAATTTTACCAAATCCAAAAACTTCTCCTACAAAACTCCTGACCGATTCTTCATCCAACATCACTTTTTTCCCAAGTATCCCTTCGTCAAAAAGAAAAAAACCATCATCCATCAACCGTGTGTTGCCGTTTCTTTTTTCCTTTCCGGAATCCGACTTTTCTTGAAAGGAAACTTCTAAAAAAAAGTGGGTGCTCTCGGTTTCCCAAGAGGATTTYAACTCGGGACCCATTTTAGGATGTTTTGTGTAGCACTCATAAAATGAGTACATTTGCATAATCTGTGTGAAGAACACAAGACACTCACTGGAATCAGCTCAACATTTGACGTCGTCATTTCATTGGCGTCGGAGACAACATTTCTACTGTTCGGAGAATCTGAAGAATTAGAAGACGTTCAGATGATATGGAAAGAAAATATCGTTGGAAAAAATAACGGATAGAAACTGGGAGACACGAAAAAAGAAGAAGAAGAAGTGTGAATAAAAGGCATCCGTGCAAAATGTGCTAATTCCATTATACGAGACGAGAAGAAGATTAAACAAACATGGAAAAACGAGACGCACACACCGATCATCGTCACATTGTTGTGTGAAGATTATAGCTGTTTGGAAGAGGATGAAAAACTATATAACACCTTCCCGAAAATGGGATACACATTATATTCTCAAGTTTGAAGATATCACACATAAAGCTGGATGACGGTAAAACCTCTAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTTCTTGAAAGGAAACTTCT</pcr_primer_p1>
		<pcr_primer_p2>TCATCTGAACGTCTTCTAATTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACTTTTCTTGAAAGGAAACTTCTAAAAAAAAGTGGGTGCTCTCGGTTTCCCAAGAGGATTTCAACTCGGGACCCATTTTAGGATGTTTTGTGTAGCACTCATAAAATGAGTACATTTGCATAATCTGTGTGAAGAACACAAGACACTCACTGGAATCAGCTCAACATTTGACGTCGTCATTTCATTGGCGTCGGAGACAACATTTCTACTGTTCGGAGAATCTGAAGAATTAGAAGACGTTCAGATGA</canonical_amplicon>
		<polymorphic_amplicon>ACTTTTCTTGAAAGGAAACTTCTAAAAAAAAGTGGGTGCTCTCGGTTTCCCAAGAGGATTTYAACTCGGGACCCATTTTAGGATGTTTTGTGTAGCACTCATAAAATGAGTACATTTGCATAATCTGTGTGAAGAACACAAGACACTCACTGGAATCAGCTCAACATTTGACGTCGTCATTTCATTGGCGTCGGAGACAACATTTCTACTGTTCGGAGAATCTGAAGAATTAGAAGACGTTCAGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19979</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>486783</contig_pos>
        <strand>+</strand>
        <context>ATCCAAAAAC[G/T]TCTCCTACAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTCCCAAAATCGTTATTTTTTGTCCTCAAATTTTACCAAATCCAAAAAC</left_flank>
        <right_flank>TCTCCTACAAAACTCCTGACCGATTCTTCATCCAACATCACTTTTTTCCC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTCGGCGAACTTTTTTTCCGATGGTTAATGGAAAAGATGTTTCTTCAAGTACACTTTTCTGTTATCGAAAGTTAAAGTTTAAACTGAAATTGTGAACAGCGTCAAAGTTTTAGGAATTTTTTTTAGAAAATAAAGAACAAAGTATACCGTAGCTTTTCTATTTTTTCGAGAATATCGTAATTGTTCTAATAGAAGCCCACCAGAAACTCCAACTTTGAGCTAGGAAATCTAGATTTCTGGGAAAGATATCACAAATGTGTAAACTATTAAAATATTGGTGATTTTATGAAGAAGAATCGATCAGTTGATCCCTTTTCAATATTTTTTACAGGAAATGAGGTATGTAGGCACTAAATAGACAGTTATCATTAGAGTGTCTACGGTATTTTGCTAATTTCCGAATGAAACCATTCATACCAAAATTCCTACTTGCCCATTTTTATTCCGGTTCCCAAAATCGTTATTTTTTGTCCTCAAATTTTACCAAATCCAAAAACTTCTCCTACAAAACTCCTGACCGATTCTTCATCCAACATCACTTTTTTCCCAAGTATCCCTTCGTCAAAAAGAAAAAAACCATCATCCATCAACCGTGTGTTGCCGTTTCTTTTTTCCTTTCCGGAATCCGACTTTTCTTGAAAGGAAACTTCTAAAAAAAAGTGGGTGCTCTCGGTTTCCCAAGAGGATTTCAACTCGGGACCCATTTTAGGATGTTTTGTGTAGCACTCATAAAATGAGTACATTTGCATAATCTGTGTGAAGAACACAAGACACTCACTGGAATCAGCTCAACATTTGACGTCGTCATTTCATTGGCGTCGGAGACAACATTTCTACTGTTCGGAGAATCTGAAGAATTAGAAGACGTTCAGATGATATGGAAAGAAAATATCGTTGGAAAAAATAACGGATAGAAACTGGGAGACACGAAAAAAGAAGAAGAAGAAGTGTGAATAAAAGGCATCCGTGCAAAATGTGCTAATTCCATTATACGAGAC</canonical>
            <polymorphic>GGCTCGGCGAACTTTTTTTCCGATGGTTAATGGAAAAGATGTTTCTTCAAGTACACTTTTCTGTTATCGAAAGTTAAAGTTTAAACTGAAATTGTGAACAGCGTCAAAGTTTTAGGAATTTTTTTTAGAAAATAAAGAACAAAGTATACCGTAGCTTTTCTATTTTTTCGAGAATATCGTAATTGTTCTAATAGAAGCCCACCAGAAACTCCAACTTTGAGCTAGGAAATCTAGATTTCTGGGAAAGATATCACAAATGTGTAAACTATTAAAATATTGGTGATTTTATGAAGAAGAATCGATCAGTTGATCCCTTTTCAATATTTTTTACAGGAAATGAGGTATGTAGGCACTAAATAGACAGTTATCATTAGAGTGTCTACGGTATTTTGCTAATTTCCGAATGAAACCATTCATACCAAAATTCCTACTTGCCCATTTTTATTCCGGTTCCCAAAATCGTTATTTTTTGTCCTCAAATTTTACCAAATCCAAAAACKTCTCCTACAAAACTCCTGACCGATTCTTCATCCAACATCACTTTTTTCCCAAGTATCCCTTCGTCAAAAAGAAAAAAACCATCATCCATCAACCGTGTGTTGCCGTTTCTTTTTTCCTTTCCGGAATCCGACTTTTCTTGAAAGGAAACTTCTAAAAAAAAGTGGGTGCTCTCGGTTTCCCAAGAGGATTTCAACTCGGGACCCATTTTAGGATGTTTTGTGTAGCACTCATAAAATGAGTACATTTGCATAATCTGTGTGAAGAACACAAGACACTCACTGGAATCAGCTCAACATTTGACGTCGTCATTTCATTGGCGTCGGAGACAACATTTCTACTGTTCGGAGAATCTGAAGAATTAGAAGACGTTCAGATGATATGGAAAGAAAATATCGTTGGAAAAAATAACGGATAGAAACTGGGAGACACGAAAAAAGAAGAAGAAGAAGTGTGAATAAAAGGCATCCGTGCAAAATGTGCTAATTCCATTATACGAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAAACCATTCATACCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTTTCAAGAAAAGTCGGATTC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATGAAACCATTCATACCAAAATTCCTACTTGCCCATTTTTATTCCGGTTCCCAAAATCGTTATTTTTTGTCCTCAAATTTTACCAAATCCAAAAACTTCTCCTACAAAACTCCTGACCGATTCTTCATCCAACATCACTTTTTTCCCAAGTATCCCTTCGTCAAAAAGAAAAAAACCATCATCCATCAACCGTGTGTTGCCGTTTCTTTTTTCCTTTCCGGAATCCGACTTTTCTTGAAAG</canonical_amplicon>
		<polymorphic_amplicon>ATGAAACCATTCATACCAAAATTCCTACTTGCCCATTTTTATTCCGGTTCCCAAAATCGTTATTTTTTGTCCTCAAATTTTACCAAATCCAAAAACKTCTCCTACAAAACTCCTGACCGATTCTTCATCCAACATCACTTTTTTCCCAAGTATCCCTTCGTCAAAAAGAAAAAAACCATCATCCATCAACCGTGTGTTGCCGTTTCTTTTTTCCTTTCCGGAATCCGACTTTTCTTGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19980</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>580368</contig_pos>
        <strand>+</strand>
        <context>GTTATTCGTA[C/T]CAGTGTGGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAACAAAAGTAGAATCCGCCGAAGAGTGTGCTCATCTGTGTTATTCGTA</left_flank>
        <right_flank>CAGTGTGGAGTATGTGTTATAGAGATTCCAGATCAAGTAGATCAAATTTT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATTTTTGAAATTCCTGGAACCTATTCAGAATCTACAACCACGACGCCAAGTGGACACTCGACGGCAATTGTTGACCTTCACGTTGAAGACACCACCACTGTCGGTGAGTGATTTTTGAGATGGCGAGGGCAGAAAAAAAGAACTGAGGAGAGCTTGGAACATTCTCAATTTAGCTGTCAACCGGAGTACAATTAGGTGTGACACAAATGTACTTGTCTCATTCTTTTTTCAAAAAGGACATTTTCCTACATGGGGTCACTGACCTTTTCATGTCTCGCTCCTAATTTTTTCCTTGCATGGCTTTTTTGTCCAGTATTTCTAGGTGTGGCTTTCTTTAAGAACCAACAACATGGACGGGATCGGTTGAACAGAGACAATGCGATACTCATCTCAGATTCTTGATTAGCAGTCATATCGATTGGGAAACTGTTGATTTGCTGATCAATCAAACAAAAGTAGAATCCGCCGAAGAGTGTGCTCATCTGTGTTATTCGTATCAGTGTGGAGTATGTGTTATAGAGATTCCAGATCAAGTAGATCAAATTTTAGTTTGCATTGTACAAGCCAGATGATGGATCTTGTCAATTCACCGTGGCAACTGATGATTTGGTGGATAAGGAGCACTGCGAGGAGGAACGAAATCAGGATAAGATGGTAGATACAGTTGAGAAATCCAGTGTTCCTGTGCAGATAACATGCCCGTACTGTATGGAAAAAGGTGTGAATTGATGAGTAGATCAACTAATTAGCACAGTTTCTCACTTCACGCAACGTTTCTGAGCACTTTGCACGACGCCTAACAGACGAATGAGTACTCGCATTCATTGAGAGACCTGTTAATAGAATGTCCAAATTTTTCTGAAAGATAGAAGAAAGTTATTTAAAAAAGAAGAAAGATAAGATTTGTGTAAGAATAGGTATACTGTATTTTCAAATCAGAATACTTAGCTTTGAATTCCAGCCTCAGAATCCACGACATCATCTTCTCCATCTGGCC</canonical>
            <polymorphic>GAAATTTTTGAAATTCCTGGAACCTATTCAGAATCTACAACCACGACGCCAAGTGGACACTCGACGGCAATTGTTGACCTTCACGTTGAAGACACCACCACTGTCGGTGAGTGATTTTTGAGATGGCGAGGGCAGAAAAAAAGAACTGAGGAGAGCTTGGAACATTCTCAATTTAGCTGTCAACCGGAGTACAATTAGGTGTGACACAAATGTACTTGTCTCATTCTTTTTTCAAAAAGGACATTTTCCTACATGGGGTCACTGACCTTTTCATGTCTCGCTCCTAATTTTTTCCTTGCATGGCTTTTTTGTCCAGTATTTCTAGGTGTGGCTTTCTTTAAGAACCAACAACATGGACGGGATCGGTTGAACAGAGACAATGCGATACTCATCTCAGATTCTTGATTAGCAGTCATATCGATTGGGAAACTGTTGATTTGCTGATCAATCAAACAAAAGTAGAATCCGCCGAAGAGTGTGCTCATCTGTGTTATTCGTAYCAGTGTGGAGTATGTGTTATAGAGATTCCAGATCAAGTAGATCAAATTTTAGTTTGCATTGTACAAGCCAGATGATGGATCTTGTCAATTCACCGTGGCAACTGATGATTTGGTGGATAAGGAGCACTGCGAGGAGGAACGAAATCAGGATAAGATGGTAGATACAGTTGAGAAATCCAGTGTTCCTGTGCAGATAACATGCCCGTACTGTATGGAAAAAGGTGTGAATTGATGAGTAGATCAACTAATTAGCACAGTTTCTCACTTCACGCAACGTTTCTGAGCACTTTGCACGACGCCTAACAGACGAATGAGTACTCGCATTCATTGAGAGACCTGTTAATAGAATGTCCAAATTTTTCTGAAAGATAGAAGAAAGTTATTTAAAAAAGAAGAAAGATAAGATTTGTGTAAGAATAGGTATACTGTATTTTCAAATCAGAATACTTAGCTTTGAATTCCAGCCTCAGAATCCACGACATCATCTTCTCCATCTGGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTAGGTGTGGCTTTCTTTA</pcr_primer_p1>
		<pcr_primer_p2>GCTTGTACAATGCAAACTAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCTAGGTGTGGCTTTCTTTAAGAACCAACAACATGGACGGGATCGGTTGAACAGAGACAATGCGATACTCATCTCAGATTCTTGATTAGCAGTCATATCGATTGGGAAACTGTTGATTTGCTGATCAATCAAACAAAAGTAGAATCCGCCGAAGAGTGTGCTCATCTGTGTTATTCGTATCAGTGTGGAGTATGTGTTATAGAGATTCCAGATCAAGTAGATCAAATTTTAGTTTGCATTGTACAAGC</canonical_amplicon>
		<polymorphic_amplicon>TTTCTAGGTGTGGCTTTCTTTAAGAACCAACAACATGGACGGGATCGGTTGAACAGAGACAATGCGATACTCATCTCAGATTCTTGATTAGCAGTCATATCGATTGGGAAACTGTTGATTTGCTGATCAATCAAACAAAAGTAGAATCCGCCGAAGAGTGTGCTCATCTGTGTTATTCGTAYCAGTGTGGAGTATGTGTTATAGAGATTCCAGATCAAGTAGATCAAATTTTAGTTTGCATTGTACAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19982</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>582148</contig_pos>
        <strand></strand>
        <context>GATTCGACCC[G/A]GCTGACAGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCATAATTCTTTTTTTATTAGGATGGCTGCTCTGGGGCTCGATTCGACCC</left_flank>
        <right_flank>GCTGACAGATCCTGCACACTTTCCTACGATGACCCACAATTCTGCGCTCG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAACAGTTGATGAGACGACAACTAAAAAGCCAGAAGAGACTACTACCCAAGTTGAGACATCGTCCACTTCAAAATCCACCACAACTTCCCAACTAACATCTGAAGTCGAATCAACTACGATATCCGAGTCGAATGATCCAGAACCAGCTATTGCTACGAAAGTAGAAATGGCAAAGGATACTGCTGGAGTCAAGACAACATTGCGAAAACGTAAGTGCATGGGAAATGGCATGTTTGAGAAGCAGTGTGATGTTTTGAAATGAACATTCTATTGGAAATTTAGAAAATTAATTGATTTCTGTTTCAGACTGCGTCATCAAGTTCCAAGCGAGACCTCTATCTGATCGTCCTGAGAATTTGAAAGCCAAATTCGAGTTGAATGTGCCAGTGGACTCTATTGAGCTTTGCGCCACTAGATGCTATCAAGTAAGTTTCTTTTAAAAAACCTTCATAATTCTTTTTTTATTAGGATGGCTGCTCTGGGGCTCGATTCGACCCGGCTGACAGATCCTGCACACTTTCCTACGATGACCCACAATTCTGCGCTCGTGGAAACGTTTTCATCCACTACGAAGCCAAGGAAGCCACCTGGTTGCATTGTGTCAATTGCTGTGAGTTTTTTGTTTCTACAACGGTTTTTGAATTTTGAACATTTCTAGACACGGTCAAGCAGAGCGACATTGATGAGGCTCGCACTGGAACCACATCTGCACCATCTAAAGAATCAGGATTTACCCCGACTTCTACTTCAGCTACTCCCTCCGATGATTCTACCACCACAGCAGTAGAGACCACAACATCATCTGAGAAAGCTCCATCGACATCTTCTGAACCATCAGTATCAGAAGAAACCACGGCGTCTATCGCTACTGCTACAATTAAACCATCAGAAGGATCAAACGACGCCGACTTCCAAAGAGGCTGTCTAATCAAGTTCCAAGCAAGACCACTTTCCGAAAGACCAATGCAATTCTCAGCTAAATTCGAAACAGAAATCAA</canonical>
            <polymorphic>CCAACAGTTGATGAGACGACAACTAAAAAGCCAGAAGAGACTACTACCCAAGTTGAGACATCGTCCACTTCAAAATCCACCACAACTTCCCAACTAACATCTGAAGTCGAATCAACTACGATATCCGAGTCGAATGATCCAGAACCAGCTATTGCTACGAAAGTAGAAATGGCAAAGGATACTGCTGGAGTCAAGACAACATTGCGAAAACGTAAGTGCATGGGAAATGGCATGTTTGAGAAGCAGTGTGATGTTTTGAAATGAACATTCTATTGGAAATTTAGAAAATTAATTGATTTCTGTTTCAGACTGCGTCATCAAGTTCCAAGCGAGACCTCTATCTGATCGTCCTGAGAATTTGAAAGCCAAATTCGAGTTGAATGTGCCAGTGGACTCTATTGAGCTTTGCGCCACTAGATGCTATCAAGTAAGTTTCTTTTAAAAAACCTTCATAATTCTTTTTTTATTAGGATGGCTGCTCTGGGGCTCGATTCGACCCRGCTGACAGATCCTGCACACTTTCCTACGATGACCCACAATTCTGCGCTCGTGGAAACGTTTTCATCCACTACGAAGCCAAGGAAGCCACCTGGTTGCATTGTGTCAATTGCTGTGAGTTTTTTGTTTCTACAACGGTTTTTGAATTTTGAACATTTCTAGACACGGTCAAGCAGAGCGACATTGATGAGGCTCGCACTGGAACCACATCTGCACCATCTAAAGAATCAGGATTTACCCCGACTTCTACTTCAGCTACTCCCTCCGATGATTCTACCACCACAGCAGTAGAGACCACAACATCATCTGAGAAAGCTCCATCGACATCTTCTGAACCATCAGTATCAGAAGAAACCACGGCGTCTATCGCTACTGCTACAATTAAACCATCAGAAGGATCAAACGACGCCGACTTCCAAAGAGGCTGTCTAATCAAGTTCCAAGCAAGACCACTTTCCGAAAGACCAATGCAATTCTCAGCTAAATTCGAAACAGAAATCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>498 410 92</canonical_bands>
                <polymorphic_bands>590 410</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>217 118 109 105 75 72 63 60 56 38 30 22 15 11 9</canonical_bands>
                <polymorphic_bands>217 118 109 105 90 72 63 60 56 38 30 22 11 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACTAGATGCTATCAAGTAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>CTAGAAATGTTCAAAATTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCACTAGATGCTATCAAGTAAGTTTCTTTTAAAAAACCTTCATAATTCTTTTTTTATTAGGATGGCTGCTCTGGGGCTCGATTCGACCCGGCTGACAGATCCTGCACACTTTCCTACGATGACCCACAATTCTGCGCTCGTGGAAACGTTTTCATCCACTACGAAGCCAAGGAAGCCACCTGGTTGCATTGTGTCAATTGCTGTGAGTTTTTTGTTTCTACAACGGTTTTTGAATTTTGAACATTTCTAG</canonical_amplicon>
		<polymorphic_amplicon>CCACTAGATGCTATCAAGTAAGTTTCTTTTAAAAAACCTTCATAATTCTTTTTTTATTAGGATGGCTGCTCTGGGGCTCGATTCGACCCRGCTGACAGATCCTGCACACTTTCCTACGATGACCCACAATTCTGCGCTCGTGGAAACGTTTTCATCCACTACGAAGCCAAGGAAGCCACCTGGTTGCATTGTGTCAATTGCTGTGAGTTTTTTGTTTCTACAACGGTTTTTGAATTTTGAACATTTCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19983</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>683659</contig_pos>
        <strand></strand>
        <context>AGYTTTTTTT[C/T]CCGGAAACTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACTCATATGAAATAATTGATTTGCCTTAGCTCTCAAAATAGTTTTTTTT</left_flank>
        <right_flank>CCGGAAACTGATAATAATTGAACATTAACAATTGAAGCTTTTATTAGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTGCAAGTTGAGCTCAATTACATCAATTTCTACGAGAGGTAACAAAAATATGCCAACTGATGAAATTTTGGTGATGTTCTGAAAAAATTTTGTGGGATGATACAGTTTCGATATCTCTTACAGAAATTGAAATAACTAAGCTCAATGCGCCAGTTAAGATGGCCTTCTATTAGAGTGCTTACGGTAGTTTCAATAGTGGAACTCTTCAAAATTTTAATTTCTTCTCTAATTTTGAATTGTAACCGAATTTCAAGATCTTTGTCCCATTACCATGACAAATTTTCAGCACAAACCAGTTCACAAACTCCAATCCATCTTCCTCTTTGTGTCATATTTTGCACCGATTCACAGATTAAAGTAATCTTCTTCAGAATTTTTAAGCTATGTATATCCTTACATTTTTTCGTTTCTGTTCCTTTTTTGTTGTTTTTCGAATCAAAACTCAGTTACTCATATGAAATAATTGATTTGCCTTAGCTCTCAAAATAGTTTTTTTTCCCGGAAACTGATAATAATTGAACATTAACAATTGAAGCTTTTATTAGAAATCAATATCAATGTTTTTGAAAATCGGACGACGAATGACGATATCGAATAGTGCTCACAATTTCAAAATTTTCCCCTCGACATATAAAAGAGTAAATGGATAGAGATTATCATTGGGTTTGGAGAAAGATGTCTAACAGAAGAGAGTCATTCCATTCTCAATGAATTTATTCAAAATATGGGGCGGCATCCGGGCGGAACATCCAGTTTTGTTGAGGTTGAGTCGATTTGCGGAAGCGGATGAATGGCTGGATGTTAGCCTCTTCTGGAAAAAGTCTGTTGAAACCATTTTGAGGTAACGGTGCAACTTACGAGTCTGGCTTTTTCGGTGACGTGGTTGATAGTCCGATGATGGATAGGCCTGGGTGATGGCGAAGAGCACGAGAAGAGCCAAGATGAGGAATCGCATGGTGATTGGAAAACTGCAAGTTGTTGGATCAGTTACTTGGGTT</canonical>
            <polymorphic>ACCTGCAAGTTGAGCTCAATTACATCAATTTCTACGAGAGGTAACAAAAATATGCCAACTGATGAAATTTTGGTGATGTTCTGAAAAAATTTTGTGGGATGATACAGTTTCGATATCTCTTACAGAAATTGAAATAACTAAGCTCAATGCGCCAGTTAAGATGGCCTTCTATTAGAGTGCTTACGGTAGTTTCAATAGTGGAACTCTTCAAAATTTTAATTTCTTCTCTAATTTTGAATTGTAACCGAATTTCAAGATCTTTGTCCCATTACCATGACAAATTTTCAGCACAAACCAGTTCACAAACTCCAATCCATCTTCCTCTTTGTGTCATATTTTGCACCGATTCACAGATTAAAGTAATCTTCTTCAGAATTTTTAAGCTATGTATATCCTTACATTTTTTCGTTTCTGTTCCTTTTTTGTTGTTTTTCGAATCAAAACTCAGTTACTCATATGAAATAATTGATTTGCCTTAGCTCTCAAAATAGTTTTTTTTYCCGGAAACTGATAATAATTGAACATTAACAATTGAAGCTTTTATTAGAAATCAATATCAATGTTTTTGAAAATCGGACGACGAATGACGATATCGAATAGTGCTCACAATTTCAAAATTTTCCCCTCGACATATAAAAGAGTAAATGGATAGAGATTATCATTGGGTTTGGAGAAAGATGTCTAACAGAAGAGAGTCATTCCATTCTCAATGAATTTATTCAAAATATGGGGCGGCATCCGGGCGGAACATCCAGTTTTGTTGAGGTTGAGTCGATTTGCGGAAGCGGATGAATGGCTGGATGTTAGCCTCTTCTGGAAAAAGTCTGTTGAAACCATTTTGAGGTAACGGTGCAACTTACGAGTCTGGCTTTTTCGGTGACGTGGTTGATAGTCCGATGATGGATAGGCCTGGGTGATGGCGAAGAGCACGAGAAGAGCCAAGATGAGGAATCGCATGGTGATTGGAAAACTGCAAGTTGTTGGATCAGTTACTTGGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 260 239</canonical_bands>
                <polymorphic_bands>740 260</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>501 239 170 90</canonical_bands>
                <polymorphic_bands>740 170 90</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCGAATCAAAACTCAGTTAC</pcr_primer_p1>
		<pcr_primer_p2>AAACCCAATGATAATCTCTATCC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TTTTCGAATCAAAACTCAGTTACTCATATGAAATAATTGATTTGCCTTAGCTCTCAAAATAGTTTTTTTTCCCGGAAACTGATAATAATTGAACATTAACAATTGAAGCTTTTATTAGAAATCAATATCAATGTTTTTGAAAATCGGACGACGAATGACGATATCGAATAGTGCTCACAATTTCAAAATTTTCCCCTCGACATATAAAAGAGTAAATGGATAGAGATTATCATTGGGTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCGAATCAAAACTCAGTTACTCATATGAAATAATTGATTTGCCTTAGCTCTCAAAATAGTTTTTTTTYCCGGAAACTGATAATAATTGAACATTAACAATTGAAGCTTTTATTAGAAATCAATATCAATGTTTTTGAAAATCGGACGACGAATGACGATATCGAATAGTGCTCACAATTTCAAAATTTTCCCCTCGACATATAAAAGAGTAAATGGATAGAGATTATCATTGGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19984</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>758762</contig_pos>
        <strand>+</strand>
        <context>AATGATAACG[C/T]TGGCTGGGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAAGAGTCAGAAAAAATTTGATAATGGAAATTGTGAGAAAATGATAACG</left_flank>
        <right_flank>TGGCTGGGGGATTGTTCTCATACAGTATAAAGATGTCTGTAATAACATTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGATTCTGGCAAAAAAAAACCTTTCCCATAATAGCTTATTCAATTGAATTAGGGATATAATCTTTGCCAACCAATATCCGTAAATATACATTTAGCCCACTCAAATCTATTGCATATATTCCAAACATCAAAATATCTCAAATCAGTTTCAGTCGAAGATCTTATCCCCGACAGTTGTGCAAGTTCCGGTAGAAGACGTGTAACTTTGGAACAAGGAATTAACATTCTAAATGCAAAGATCAAACATTTTTTCAATCTTGCTGAAATGATTTCATAAATGTTTTTATTCTCTCATAAAATGTTCCAGCTTGTTGAATGTGACAAATCCTTGTATCCGGATGAACCACCTTCAAATTTTTGAGATTGTGCATAGAAAATCAAAAGTTATCCGATAATCCATCAGAGCTTTTTTATTATTATAAATGACAGCCGATGTTGGTATTAAGGGATAAGAGTCAGAAAAAATTTGATAATGGAAATTGTGAGAAAATGATAACGTTGGCTGGGGGATTGTTCTCATACAGTATAAAGATGTCTGTAATAACATTGCGTGTTCGTAGGTAGCCCATGGGAATTTTTAGTCATAGAACGGAGAAAGTTTTGGAAATTAAAATAGCGATACAGGTTCTCACGGAAGTTGTTGAGTCTGGTATTCAAGGGAATGAGCAATCTGAAGTCAAAGGCTGCTATGCAAAAACTGGAGCTGTGGAAGACGATTTCCGGCCACGACTGAACTACCGTAGTAAGTAAATATTTTTTACTTTCACATCTTTCCTCGATTTTCGTTCGACACTCTTCCAGAGCTCCAATTTTTTGTACCAGAATAAAACTTCAAATATTTGCAGTTTGCCATGCAATATTCAGAATAGAGAGCATAGTTTCTGGGCCTAAAATCCAGAGTTACTAAATGTTTGCTACAATTTATTCGGTCAAGACCAATTCATTACGTCACAAATTGAATACAACTCTGTCACATTTTGGAGTACAATTGAGTTTCCG</canonical>
            <polymorphic>ACGATTCTGGCAAAAAAAAACCTTTCCCATAATAGCTTATTCAATTGAATTAGGGATATAATCTTTGCCAACCAATATCCGTAAATATACATTTAGCCCACTCAAATCTATTGCATATATTCCAAACATCAAAATATCTCAAATCAGTTTCAGTCGAAGATCTTATCCCCGACAGTTGTGCAAGTTCCGGTAGAAGACGTGTAACTTTGGAACAAGGAATTAACATTCTAAATGCAAAGATCAAACATTTTTTCAATCTTGCTGAAATGATTTCATAAATGTTTTTATTCTCTCATAAAATGTTCCAGCTTGTTGAATGTGACAAATCCTTGTATCCGGATGAACCACCTTCAAATTTTTGAGATTGTGCATAGAAAATCAAAAGTTATCCGATAATCCATCAGAGCTTTTTTATTATTATAAATGACAGCCGATGTTGGTATTAAGGGATAAGAGTCAGAAAAAATTTGATAATGGAAATTGTGAGAAAATGATAACGYTGGCTGGGGGATTGTTCTCATACAGTATAAAGATGTCTGTAATAACATTGCGTGTTCGTAGGTAGCCCATGGGAATTTTTAGTCATAGAACGGAGAAAGTTTTGGAAATTAAAATAGCGATACAGGTTCTCACGGAAGTTGTTGAGTCTGGTATTCAAGGGAATGAGCAATCTGAAGTCAAAGGCTGCTATGCAAAAACTGGAGCTGTGGAAGACGATTTCCGGCCACGACTGAACTACCGTAGTAAGTAAATATTTTTTACTTTCACATCTTTCCTCGATTTTCGTTCGACACTCTTCCAGAGCTCCAATTTTTTGTACCAGAATAAAACTTCAAATATTTGCAGTTTGCCATGCAATATTCAGAATAGAGAGCATAGTTTCTGGGCCTAAAATCCAGAGTTACTAAATGTTTGCTACAATTTATTCGGTCAAGACCAATTCATTACGTCACAAATTGAATACAACTCTGTCACATTTTGGAGTACAATTGAGTTTCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>450 300 197 53</canonical_bands>
                <polymorphic_bands>750 197 53</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTGCATAGAAAATCAAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTAATTTCCAAAACTTTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGTGCATAGAAAATCAAAAGTTATCCGATAATCCATCAGAGCTTTTTTATTATTATAAATGACAGCCGATGTTGGTATTAAGGGATAAGAGTCAGAAAAAATTTGATAATGGAAATTGTGAGAAAATGATAACGTTGGCTGGGGGATTGTTCTCATACAGTATAAAGATGTCTGTAATAACATTGCGTGTTCGTAGGTAGCCCATGGGAATTTTTAGTCATAGAACGGAGAAAGTTTTGGAAATTAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTGTGCATAGAAAATCAAAAGTTATCCGATAATCCATCAGAGCTTTTTTATTATTATAAATGACAGCCGATGTTGGTATTAAGGGATAAGAGTCAGAAAAAATTTGATAATGGAAATTGTGAGAAAATGATAACGYTGGCTGGGGGATTGTTCTCATACAGTATAAAGATGTCTGTAATAACATTGCGTGTTCGTAGGTAGCCCATGGGAATTTTTAGTCATAGAACGGAGAAAGTTTTGGAAATTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19985</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>9563</contig_pos>
        <strand>+</strand>
        <context>GCGTTGAAAT[A/C]AAGTTTGAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAAT</left_flank>
        <right_flank>AAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCGAATTTCTAGGAATTTTGAGAATTTCGACTCAAATTTTGGCAAAAAATGAGCAATTTCCGGTCAATTTTTAGCTTAAAAAATCGGTTTTTAAGCGATTTTCAGCCGAATTTCATGACAAATTTGACCATTTCCAGCCAATTTTCCAATGAAAATCGATATTTTATTCACCCAGTTGGGACACGTGTTCCAATCAAGTTGACAACGACGTTCGAGTACTTGACGACCTGAAAAATGGTAAATTTGAGCTTTGAGAACGATTTTTTTCAGTCGGAACTCGATTTCGGCGATTTTAAGCTCTGAAAATGACTAAAAGCCCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTT</canonical>
            <polymorphic>TTTTTCGAATTTCTAGGAATTTTGAGAATTTCGACTCAAATTTTGGCAAAAAATGAGCAATTTCCGGTCAATTTTTAGCTTAAAAAATCGGTTTTTAAGCGATTTTCAGCCGAATTTCATGACAAATTTGACCATTTCCAGCCAATTTTCCAATGAAAATCGATATTTTATTCACCCAGTTGGGACACGTGTTCCAATCAAGTTGACAACGACGTTCGAGTACTTGACGACCTGAAAAATGGTAAATTTGAGCTTTGAGAACGATTTTTTTCAGTCGGAACTCGATTTCGGCGATTTTAAGCTCTGAAAATGACTAAAAGCCCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATMAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCATTTTTAAAGCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CGATTTTTAGCTCAAATTACAGT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCG</canonical_amplicon>
		<polymorphic_amplicon>CCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATMAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19986</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>9587</contig_pos>
        <strand>+</strand>
        <context>AAAACTGCCT[A/G]AAAATCACAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCT</left_flank>
        <right_flank>AAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATTTCGACTCAAATTTTGGCAAAAAATGAGCAATTTCCGGTCAATTTTTAGCTTAAAAAATCGGTTTTTAAGCGATTTTCAGCCGAATTTCATGACAAATTTGACCATTTCCAGCCAATTTTCCAATGAAAATCGATATTTTATTCACCCAGTTGGGACACGTGTTCCAATCAAGTTGACAACGACGTTCGAGTACTTGACGACCTGAAAAATGGTAAATTTGAGCTTTGAGAACGATTTTTTTCAGTCGGAACTCGATTTCGGCGATTTTAAGCTCTGAAAATGACTAAAAGCCCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGG</canonical>
            <polymorphic>AGAATTTCGACTCAAATTTTGGCAAAAAATGAGCAATTTCCGGTCAATTTTTAGCTTAAAAAATCGGTTTTTAAGCGATTTTCAGCCGAATTTCATGACAAATTTGACCATTTCCAGCCAATTTTCCAATGAAAATCGATATTTTATTCACCCAGTTGGGACACGTGTTCCAATCAAGTTGACAACGACGTTCGAGTACTTGACGACCTGAAAAATGGTAAATTTGAGCTTTGAGAACGATTTTTTTCAGTCGGAACTCGATTTCGGCGATTTTAAGCTCTGAAAATGACTAAAAGCCCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTRAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGTTGCGATTTTCAGAGT</pcr_primer_p1>
		<pcr_primer_p2>TAAAAATGGGATTTTCGAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTA</canonical_amplicon>
		<polymorphic_amplicon>GAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTRAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19987</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>9648</contig_pos>
        <strand>+</strand>
        <context>TTTTGATATC[A/G]AAAACCTAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATC</left_flank>
        <right_flank>AAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCGGTTTTTAAGCGATTTTCAGCCGAATTTCATGACAAATTTGACCATTTCCAGCCAATTTTCCAATGAAAATCGATATTTTATTCACCCAGTTGGGACACGTGTTCCAATCAAGTTGACAACGACGTTCGAGTACTTGACGACCTGAAAAATGGTAAATTTGAGCTTTGAGAACGATTTTTTTCAGTCGGAACTCGATTTCGGCGATTTTAAGCTCTGAAAATGACTAAAAGCCCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTG</canonical>
            <polymorphic>AATCGGTTTTTAAGCGATTTTCAGCCGAATTTCATGACAAATTTGACCATTTCCAGCCAATTTTCCAATGAAAATCGATATTTTATTCACCCAGTTGGGACACGTGTTCCAATCAAGTTGACAACGACGTTCGAGTACTTGACGACCTGAAAAATGGTAAATTTGAGCTTTGAGAACGATTTTTTTCAGTCGGAACTCGATTTCGGCGATTTTAAGCTCTGAAAATGACTAAAAGCCCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCRAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATTTTCACTGTAATTTGAGCTA</pcr_primer_p1>
		<pcr_primer_p2>GAAAATCGCACTAAAAATTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTC</canonical_amplicon>
		<polymorphic_amplicon>ACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCRAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19988</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>9661</contig_pos>
        <strand>+</strand>
        <context>AACCTAGATT[C/T]TATCKTATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATT</left_flank>
        <right_flank>TATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGATTTTCAGCCGAATTTCATGACAAATTTGACCATTTCCAGCCAATTTTCCAATGAAAATCGATATTTTATTCACCCAGTTGGGACACGTGTTCCAATCAAGTTGACAACGACGTTCGAGTACTTGACGACCTGAAAAATGGTAAATTTGAGCTTTGAGAACGATTTTTTTCAGTCGGAACTCGATTTCGGCGATTTTAAGCTCTGAAAATGACTAAAAGCCCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGC</canonical>
            <polymorphic>GCGATTTTCAGCCGAATTTCATGACAAATTTGACCATTTCCAGCCAATTTTCCAATGAAAATCGATATTTTATTCACCCAGTTGGGACACGTGTTCCAATCAAGTTGACAACGACGTTCGAGTACTTGACGACCTGAAAAATGGTAAATTTGAGCTTTGAGAACGATTTTTTTCAGTCGGAACTCGATTTCGGCGATTTTAAGCTCTGAAAATGACTAAAAGCCCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTYTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>504 264 116 116</canonical_bands>
                <polymorphic_bands>620 264 116</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATTTTCACTGTAATTTGAGCTA</pcr_primer_p1>
		<pcr_primer_p2>GAAAATCGCACTAAAAATTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTC</canonical_amplicon>
		<polymorphic_amplicon>ACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTYTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19994</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>9683</contig_pos>
        <strand>+</strand>
        <context>ATCTTTTCTW[A/G]WTTTTACAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTT</left_flank>
        <right_flank>TTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACAAATTTGACCATTTCCAGCCAATTTTCCAATGAAAATCGATATTTTATTCACCCAGTTGGGACACGTGTTCCAATCAAGTTGACAACGACGTTCGAGTACTTGACGACCTGAAAAATGGTAAATTTGAGCTTTGAGAACGATTTTTTTCAGTCGGAACTCGATTTCGGCGATTTTAAGCTCTGAAAATGACTAAAAGCCCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATTTGAAGCGAT</canonical>
            <polymorphic>GACAAATTTGACCATTTCCAGCCAATTTTCCAATGAAAATCGATATTTTATTCACCCAGTTGGGACACGTGTTCCAATCAAGTTGACAACGACGTTCGAGTACTTGACGACCTGAAAAATGGTAAATTTGAGCTTTGAGAACGATTTTTTTCAGTCGGAACTCGATTTCGGCGATTTTAAGCTCTGAAAATGACTAAAAGCCCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTRTTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATTTGAAGCGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATTTTCACTGTAATTTGAGCTA</pcr_primer_p1>
		<pcr_primer_p2>GAAAATCGCACTAAAAATTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTC</canonical_amplicon>
		<polymorphic_amplicon>ACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTRTTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19995</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>9684</contig_pos>
        <strand>+</strand>
        <context>TCTTTTCTWR[A/T]TTTTACAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTA</left_flank>
        <right_flank>TTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAATTTGACCATTTCCAGCCAATTTTCCAATGAAAATCGATATTTTATTCACCCAGTTGGGACACGTGTTCCAATCAAGTTGACAACGACGTTCGAGTACTTGACGACCTGAAAAATGGTAAATTTGAGCTTTGAGAACGATTTTTTTCAGTCGGAACTCGATTTCGGCGATTTTAAGCTCTGAAAATGACTAAAAGCCCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATTTGAAGCGATT</canonical>
            <polymorphic>ACAAATTTGACCATTTCCAGCCAATTTTCCAATGAAAATCGATATTTTATTCACCCAGTTGGGACACGTGTTCCAATCAAGTTGACAACGACGTTCGAGTACTTGACGACCTGAAAAATGGTAAATTTGAGCTTTGAGAACGATTTTTTTCAGTCGGAACTCGATTTCGGCGATTTTAAGCTCTGAAAATGACTAAAAGCCCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTAWTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATTTGAAGCGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATTTTCACTGTAATTTGAGCTA</pcr_primer_p1>
		<pcr_primer_p2>GAAAATCGCACTAAAAATTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTC</canonical_amplicon>
		<polymorphic_amplicon>ACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTAWTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19996</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>9700</contig_pos>
        <strand>+</strand>
        <context>CAGTTAATTG[A/C]TGGCTTYWAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTG</left_flank>
        <right_flank>TGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGCCAATTTTCCAATGAAAATCGATATTTTATTCACCCAGTTGGGACACGTGTTCCAATCAAGTTGACAACGACGTTCGAGTACTTGACGACCTGAAAAATGGTAAATTTGAGCTTTGAGAACGATTTTTTTCAGTCGGAACTCGATTTCGGCGATTTTAAGCTCTGAAAATGACTAAAAGCCCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATTTGAAGCGATTTTAACCCATTTTTCAG</canonical>
            <polymorphic>CCAGCCAATTTTCCAATGAAAATCGATATTTTATTCACCCAGTTGGGACACGTGTTCCAATCAAGTTGACAACGACGTTCGAGTACTTGACGACCTGAAAAATGGTAAATTTGAGCTTTGAGAACGATTTTTTTCAGTCGGAACTCGATTTCGGCGATTTTAAGCTCTGAAAATGACTAAAAGCCCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGMTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATTTGAAGCGATTTTAACCCATTTTTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATTTTCACTGTAATTTGAGCTA</pcr_primer_p1>
		<pcr_primer_p2>GAAAATCGCACTAAAAATTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTC</canonical_amplicon>
		<polymorphic_amplicon>ACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGMTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19997</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>9707</contig_pos>
        <strand>+</strand>
        <context>TTGMTGGCTT[C/T]WAAAGCRTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTT</left_flank>
        <right_flank>AAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTCCAATGAAAATCGATATTTTATTCACCCAGTTGGGACACGTGTTCCAATCAAGTTGACAACGACGTTCGAGTACTTGACGACCTGAAAAATGGTAAATTTGAGCTTTGAGAACGATTTTTTTCAGTCGGAACTCGATTTCGGCGATTTTAAGCTCTGAAAATGACTAAAAGCCCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATTTGAAGCGATTTTAACCCATTTTTCAGCAATTTC</canonical>
            <polymorphic>ATTTTCCAATGAAAATCGATATTTTATTCACCCAGTTGGGACACGTGTTCCAATCAAGTTGACAACGACGTTCGAGTACTTGACGACCTGAAAAATGGTAAATTTGAGCTTTGAGAACGATTTTTTTCAGTCGGAACTCGATTTCGGCGATTTTAAGCTCTGAAAATGACTAAAAGCCCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTYAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATTTGAAGCGATTTTAACCCATTTTTCAGCAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATTTTCACTGTAATTTGAGCTA</pcr_primer_p1>
		<pcr_primer_p2>GAAAATCGCACTAAAAATTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTC</canonical_amplicon>
		<polymorphic_amplicon>ACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTYAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19998</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>9708</contig_pos>
        <strand>+</strand>
        <context>TGMTGGCTTY[A/T]AAAGCRTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTC</left_flank>
        <right_flank>AAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCCAATGAAAATCGATATTTTATTCACCCAGTTGGGACACGTGTTCCAATCAAGTTGACAACGACGTTCGAGTACTTGACGACCTGAAAAATGGTAAATTTGAGCTTTGAGAACGATTTTTTTCAGTCGGAACTCGATTTCGGCGATTTTAAGCTCTGAAAATGACTAAAAGCCCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATTTGAAGCGATTTTAACCCATTTTTCAGCAATTTCT</canonical>
            <polymorphic>TTTTCCAATGAAAATCGATATTTTATTCACCCAGTTGGGACACGTGTTCCAATCAAGTTGACAACGACGTTCGAGTACTTGACGACCTGAAAAATGGTAAATTTGAGCTTTGAGAACGATTTTTTTCAGTCGGAACTCGATTTCGGCGATTTTAAGCTCTGAAAATGACTAAAAGCCCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCWAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATTTGAAGCGATTTTAACCCATTTTTCAGCAATTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATTTTCACTGTAATTTGAGCTA</pcr_primer_p1>
		<pcr_primer_p2>GAAAATCGCACTAAAAATTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTC</canonical_amplicon>
		<polymorphic_amplicon>ACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCWAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb19999</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>9714</contig_pos>
        <strand>+</strand>
        <context>CTTYWAAAGC[A/G]TTTTTGGGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGC</left_flank>
        <right_flank>TTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGAAAATCGATATTTTATTCACCCAGTTGGGACACGTGTTCCAATCAAGTTGACAACGACGTTCGAGTACTTGACGACCTGAAAAATGGTAAATTTGAGCTTTGAGAACGATTTTTTTCAGTCGGAACTCGATTTCGGCGATTTTAAGCTCTGAAAATGACTAAAAGCCCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATTTGAAGCGATTTTAACCCATTTTTCAGCAATTTCTGACTAT</canonical>
            <polymorphic>AATGAAAATCGATATTTTATTCACCCAGTTGGGACACGTGTTCCAATCAAGTTGACAACGACGTTCGAGTACTTGACGACCTGAAAAATGGTAAATTTGAGCTTTGAGAACGATTTTTTTCAGTCGGAACTCGATTTCGGCGATTTTAAGCTCTGAAAATGACTAAAAGCCCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCRTTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATTTGAAGCGATTTTAACCCATTTTTCAGCAATTTCTGACTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATTTTCACTGTAATTTGAGCTA</pcr_primer_p1>
		<pcr_primer_p2>GAAAATCGCACTAAAAATTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTC</canonical_amplicon>
		<polymorphic_amplicon>ACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCRTTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20000</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>9725</contig_pos>
        <strand>+</strand>
        <context>TTTTTGGGTT[A/G]AAWAKGAMCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTT</left_flank>
        <right_flank>AATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATTTTATTCACCCAGTTGGGACACGTGTTCCAATCAAGTTGACAACGACGTTCGAGTACTTGACGACCTGAAAAATGGTAAATTTGAGCTTTGAGAACGATTTTTTTCAGTCGGAACTCGATTTCGGCGATTTTAAGCTCTGAAAATGACTAAAAGCCCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATTTGAAGCGATTTTAACCCATTTTTCAGCAATTTCTGACTATTCTGAGTGAAA</canonical>
            <polymorphic>ATATTTTATTCACCCAGTTGGGACACGTGTTCCAATCAAGTTGACAACGACGTTCGAGTACTTGACGACCTGAAAAATGGTAAATTTGAGCTTTGAGAACGATTTTTTTCAGTCGGAACTCGATTTCGGCGATTTTAAGCTCTGAAAATGACTAAAAGCCCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTRAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATTTGAAGCGATTTTAACCCATTTTTCAGCAATTTCTGACTATTCTGAGTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATTTTCACTGTAATTTGAGCTA</pcr_primer_p1>
		<pcr_primer_p2>GAAAATCGCACTAAAAATTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTC</canonical_amplicon>
		<polymorphic_amplicon>ACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTRAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20001</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>9728</contig_pos>
        <strand>+</strand>
        <context>TTGGGTTRAA[A/T]AKGAMCAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAA</left_flank>
        <right_flank>ATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTATTCACCCAGTTGGGACACGTGTTCCAATCAAGTTGACAACGACGTTCGAGTACTTGACGACCTGAAAAATGGTAAATTTGAGCTTTGAGAACGATTTTTTTCAGTCGGAACTCGATTTCGGCGATTTTAAGCTCTGAAAATGACTAAAAGCCCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATTTGAAGCGATTTTAACCCATTTTTCAGCAATTTCTGACTATTCTGAGTGAAAATC</canonical>
            <polymorphic>TTTTATTCACCCAGTTGGGACACGTGTTCCAATCAAGTTGACAACGACGTTCGAGTACTTGACGACCTGAAAAATGGTAAATTTGAGCTTTGAGAACGATTTTTTTCAGTCGGAACTCGATTTCGGCGATTTTAAGCTCTGAAAATGACTAAAAGCCCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAAWATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATTTGAAGCGATTTTAACCCATTTTTCAGCAATTTCTGACTATTCTGAGTGAAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATTTTCACTGTAATTTGAGCTA</pcr_primer_p1>
		<pcr_primer_p2>GAAAATCGCACTAAAAATTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTC</canonical_amplicon>
		<polymorphic_amplicon>ACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAAWATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20002</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>9730</contig_pos>
        <strand>+</strand>
        <context>GGGTTRAAWA[G/T]GAMCAAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATA</left_flank>
        <right_flank>GACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATTCACCCAGTTGGGACACGTGTTCCAATCAAGTTGACAACGACGTTCGAGTACTTGACGACCTGAAAAATGGTAAATTTGAGCTTTGAGAACGATTTTTTTCAGTCGGAACTCGATTTCGGCGATTTTAAGCTCTGAAAATGACTAAAAGCCCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATTTGAAGCGATTTTAACCCATTTTTCAGCAATTTCTGACTATTCTGAGTGAAAATCCG</canonical>
            <polymorphic>TTATTCACCCAGTTGGGACACGTGTTCCAATCAAGTTGACAACGACGTTCGAGTACTTGACGACCTGAAAAATGGTAAATTTGAGCTTTGAGAACGATTTTTTTCAGTCGGAACTCGATTTCGGCGATTTTAAGCTCTGAAAATGACTAAAAGCCCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATAKGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATTTGAAGCGATTTTAACCCATTTTTCAGCAATTTCTGACTATTCTGAGTGAAAATCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATTTTCACTGTAATTTGAGCTA</pcr_primer_p1>
		<pcr_primer_p2>GAAAATCGCACTAAAAATTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTC</canonical_amplicon>
		<polymorphic_amplicon>ACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATAKGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20003</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>9733</contig_pos>
        <strand>+</strand>
        <context>TTRAAWAKGA[A/C]CAAAATTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGA</left_flank>
        <right_flank>CAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCACCCAGTTGGGACACGTGTTCCAATCAAGTTGACAACGACGTTCGAGTACTTGACGACCTGAAAAATGGTAAATTTGAGCTTTGAGAACGATTTTTTTCAGTCGGAACTCGATTTCGGCGATTTTAAGCTCTGAAAATGACTAAAAGCCCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATTTGAAGCGATTTTAACCCATTTTTCAGCAATTTCTGACTATTCTGAGTGAAAATCCGGTC</canonical>
            <polymorphic>TTCACCCAGTTGGGACACGTGTTCCAATCAAGTTGACAACGACGTTCGAGTACTTGACGACCTGAAAAATGGTAAATTTGAGCTTTGAGAACGATTTTTTTCAGTCGGAACTCGATTTCGGCGATTTTAAGCTCTGAAAATGACTAAAAGCCCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGAMCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATTTGAAGCGATTTTAACCCATTTTTCAGCAATTTCTGACTATTCTGAGTGAAAATCCGGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATTTTCACTGTAATTTGAGCTA</pcr_primer_p1>
		<pcr_primer_p2>GAAAATCGCACTAAAAATTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTC</canonical_amplicon>
		<polymorphic_amplicon>ACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGAMCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20004</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>9890</contig_pos>
        <strand>+</strand>
        <context>CTTTTAAAGC[A/G]ATTTTTCGGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGC</left_flank>
        <right_flank>ATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATTTGAAGCGATTTTAACCCATTTTTCAGCAATTTCTGACTATTCTGAGTGAAAATCCGGTCATTTTTTGAAAAAAAAATTTTTTGACGTAAACCTCAAATTTTCGGCTGAAATAGTTGATTTTAGAGGTTTTAGAGGCATTTTTCTAGCTTTTTAGACCCAGAAAACCGTTTAAAAACACCCCAAACCCATAGGAAAACCCTTTTTTCGAATTTTTTT</canonical>
            <polymorphic>TTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCRATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATTTGAAGCGATTTTAACCCATTTTTCAGCAATTTCTGACTATTCTGAGTGAAAATCCGGTCATTTTTTGAAAAAAAAATTTTTTGACGTAAACCTCAAATTTTCGGCTGAAATAGTTGATTTTAGAGGTTTTAGAGGCATTTTTCTAGCTTTTTAGACCCAGAAAACCGTTTAAAAACACCCCAAACCCATAGGAAAACCCTTTTTTCGAATTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>150 131 112 112 96 82 71 66 47 42 31 22 21 9 8</canonical_bands>
                <polymorphic_bands>150 131 112 112 102 96 82 66 47 42 22 21 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAGCTAAAAATCGACTAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTATATGAGAGAGCACAAAGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAA</canonical_amplicon>
		<polymorphic_amplicon>AAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCRATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20005</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>9915</contig_pos>
        <strand>+</strand>
        <context>AATGCTCTAA[A/T]ATTGCAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAA</left_flank>
        <right_flank>ATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATTTGAAGCGATTTTAACCCATTTTTCAGCAATTTCTGACTATTCTGAGTGAAAATCCGGTCATTTTTTGAAAAAAAAATTTTTTGACGTAAACCTCAAATTTTCGGCTGAAATAGTTGATTTTAGAGGTTTTAGAGGCATTTTTCTAGCTTTTTAGACCCAGAAAACCGTTTAAAAACACCCCAAACCCATAGGAAAACCCTTTTTTCGAATTTTTTTCAAAATTTAGGTTTTTTTTCAGATT</canonical>
            <polymorphic>GAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAAWATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATTTGAAGCGATTTTAACCCATTTTTCAGCAATTTCTGACTATTCTGAGTGAAAATCCGGTCATTTTTTGAAAAAAAAATTTTTTGACGTAAACCTCAAATTTTCGGCTGAAATAGTTGATTTTAGAGGTTTTAGAGGCATTTTTCTAGCTTTTTAGACCCAGAAAACCGTTTAAAAACACCCCAAACCCATAGGAAAACCCTTTTTTCGAATTTTTTTCAAAATTTAGGTTTTTTTTCAGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAGCTAAAAATCGACTAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTATATGAGAGAGCACAAAGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAA</canonical_amplicon>
		<polymorphic_amplicon>AAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAAWATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20007</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>10124</contig_pos>
        <strand>+</strand>
        <context>ATACGGTAAC[C/G]ACGTTTCCGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAAC</left_flank>
        <right_flank>ACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATTTGAAGCGATTTTAACCCATTTTTCAGCAATTTCTGACTATTCTGAGTGAAAATCCGGTCATTTTTTGAAAAAAAAATTTTTTGACGTAAACCTCAAATTTTCGGCTGAAATAGTTGATTTTAGAGGTTTTAGAGGCATTTTTCTAGCTTTTTAGACCCAGAAAACCGTTTAAAAACACCCCAAACCCATAGGAAAACCCTTTTTTCGAATTTTTTTCAAAATTTAGGTTTTTTTTCAGATTTTTTCAATTTTTTCCGAATTTCCAGATATTCCCTACCTTCCACCATTTCCCTTTCTAAATTGAGCCCCCTGTGAGCTCACTCGTGGCTCTGGATGCGCGTTTTCCGGGGTTAGAACCGAAATACTGCTATAGTTTTGGCTGGCGACCACTAGAACCGGCTGTCTCGACGATAAGGACCTACCCAAAACCGATAGCATGGCTGAAAATTT</canonical>
            <polymorphic>CCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACSACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATTTGAAGCGATTTTAACCCATTTTTCAGCAATTTCTGACTATTCTGAGTGAAAATCCGGTCATTTTTTGAAAAAAAAATTTTTTGACGTAAACCTCAAATTTTCGGCTGAAATAGTTGATTTTAGAGGTTTTAGAGGCATTTTTCTAGCTTTTTAGACCCAGAAAACCGTTTAAAAACACCCCAAACCCATAGGAAAACCCTTTTTTCGAATTTTTTTCAAAATTTAGGTTTTTTTTCAGATTTTTTCAATTTTTTCCGAATTTCCAGATATTCCCTACCTTCCACCATTTCCCTTTCTAAATTGAGCCCCCTGTGAGCTCACTCGTGGCTCTGGATGCGCGTTTTCCGGGGTTAGAACCGAAATACTGCTATAGTTTTGGCTGGCGACCACTAGAACCGGCTGTCTCGACGATAAGGACCTACCCAAAACCGATAGCATGGCTGAAAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGTNACC</site>
                <isoschizomers>
                    <enzyme>BstEII</enzyme>
                    <enzyme>BstPI</enzyme>
                    <enzyme>Eco91I</enzyme>
                    <enzyme>EcoO65I</enzyme>
                    <enzyme>PspEI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>205 129 116 106 104 97 69 63 61 31 7 6 6</canonical_bands>
                <polymorphic_bands>213 205 129 106 104 69 63 61 31 7 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAGAGGACCTGTCCGAGTT</pcr_primer_p1>
		<pcr_primer_p2>TTCACTCAGAATAGTCAGAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATTTGAAGCGATTTTAACCCATTTTTCAGCAATTTCTGACTATTCTGAGTGAA</canonical_amplicon>
		<polymorphic_amplicon>ATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACSACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATTTGAAGCGATTTTAACCCATTTTTCAGCAATTTCTGACTATTCTGAGTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20008</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>69871</contig_pos>
        <strand>+</strand>
        <context>TGCCAAATCC[C/G]AAGTTGMTAS</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCC</left_flank>
        <right_flank>AAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTGTACAAAATTTCACCCTTCTAGCGTTAAGAGGAGCCGAGATACCCGTGTTTGAAAGCTTGACCAACGCGGCGCTGTAGCGTCGCGGTTGGCTAACTTTGTTCAGTGCAATCCTCAAAAGCTGAAATTTGATACACACAATTGAATCGTTTGGTGCAGTTGGCTCACAAAATTTCAGCTTGCTCAGAACATTTTAAGGCAAGTTACAGCTATTTGAAGTTTTGACCTATGCGGCGCGGTCGCGTCGCGGTTGGCTAACTTTGGTCAGAAGAATCCTAGCAACCTGAATTTTGTGAGGCATATAGAACAATCTATTCCATAGTGCTTATTAAATTTCAACGCGCTAGGACCGACCTGAGCAAAGCTAGCCGACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTTATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACC</canonical>
            <polymorphic>ACTGTACAAAATTTCACCCTTCTAGCGTTAAGAGGAGCCGAGATACCCGTGTTTGAAAGCTTGACCAACGCGGCGCTGTAGCGTCGCGGTTGGCTAACTTTGTTCAGTGCAATCCTCAAAAGCTGAAATTTGATACACACAATTGAATCGTTTGGTGCAGTTGGCTCACAAAATTTCAGCTTGCTCAGAACATTTTAAGGCAAGTTACAGCTATTTGAAGTTTTGACCTATGCGGCGCGGTCGCGTCGCGGTTGGCTAACTTTGGTCAGAAGAATCCTAGCAACCTGAATTTTGTGAGGCATATAGAACAATCTATTCCATAGTGCTTATTAAATTTCAACGCGCTAGGACCGACCTGAGCAAAGCTAGCCGACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTTATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCSAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>324 231 187 177 81</canonical_bands>
                <polymorphic_bands>555 187 177 81</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAGCTGAAATTTTGTGAATC</pcr_primer_p1>
		<pcr_primer_p2>GAAATTTCACAGAGACAATCAAG</pcr_primer_p2>
		<pcr_amplicon_size>222</pcr_amplicon_size>
		<canonical_amplicon>GAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTC</canonical_amplicon>
		<polymorphic_amplicon>GAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCSAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20009</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>69878</contig_pos>
        <strand>+</strand>
        <context>TCCSAAGTTG[A/C]TASGAAAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTG</left_flank>
        <right_flank>TAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTTCACCCTTCTAGCGTTAAGAGGAGCCGAGATACCCGTGTTTGAAAGCTTGACCAACGCGGCGCTGTAGCGTCGCGGTTGGCTAACTTTGTTCAGTGCAATCCTCAAAAGCTGAAATTTGATACACACAATTGAATCGTTTGGTGCAGTTGGCTCACAAAATTTCAGCTTGCTCAGAACATTTTAAGGCAAGTTACAGCTATTTGAAGTTTTGACCTATGCGGCGCGGTCGCGTCGCGGTTGGCTAACTTTGGTCAGAAGAATCCTAGCAACCTGAATTTTGTGAGGCATATAGAACAATCTATTCCATAGTGCTTATTAAATTTCAACGCGCTAGGACCGACCTGAGCAAAGCTAGCCGACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTTATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGA</canonical>
            <polymorphic>AAAATTTCACCCTTCTAGCGTTAAGAGGAGCCGAGATACCCGTGTTTGAAAGCTTGACCAACGCGGCGCTGTAGCGTCGCGGTTGGCTAACTTTGTTCAGTGCAATCCTCAAAAGCTGAAATTTGATACACACAATTGAATCGTTTGGTGCAGTTGGCTCACAAAATTTCAGCTTGCTCAGAACATTTTAAGGCAAGTTACAGCTATTTGAAGTTTTGACCTATGCGGCGCGGTCGCGTCGCGGTTGGCTAACTTTGGTCAGAAGAATCCTAGCAACCTGAATTTTGTGAGGCATATAGAACAATCTATTCCATAGTGCTTATTAAATTTCAACGCGCTAGGACCGACCTGAGCAAAGCTAGCCGACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTTATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGMTAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGCTGAAATTTTGTGAATC</pcr_primer_p1>
		<pcr_primer_p2>GAAATTTCACAGAGACAATCAAG</pcr_primer_p2>
		<pcr_amplicon_size>222</pcr_amplicon_size>
		<canonical_amplicon>GAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTC</canonical_amplicon>
		<polymorphic_amplicon>GAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGMTAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20010</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>69881</contig_pos>
        <strand>+</strand>
        <context>SAAGTTGMTA[C/G]GAAAGTTCTA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATA</left_flank>
        <right_flank>GAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCACCCTTCTAGCGTTAAGAGGAGCCGAGATACCCGTGTTTGAAAGCTTGACCAACGCGGCGCTGTAGCGTCGCGGTTGGCTAACTTTGTTCAGTGCAATCCTCAAAAGCTGAAATTTGATACACACAATTGAATCGTTTGGTGCAGTTGGCTCACAAAATTTCAGCTTGCTCAGAACATTTTAAGGCAAGTTACAGCTATTTGAAGTTTTGACCTATGCGGCGCGGTCGCGTCGCGGTTGGCTAACTTTGGTCAGAAGAATCCTAGCAACCTGAATTTTGTGAGGCATATAGAACAATCTATTCCATAGTGCTTATTAAATTTCAACGCGCTAGGACCGACCTGAGCAAAGCTAGCCGACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTTATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGT</canonical>
            <polymorphic>ATTTCACCCTTCTAGCGTTAAGAGGAGCCGAGATACCCGTGTTTGAAAGCTTGACCAACGCGGCGCTGTAGCGTCGCGGTTGGCTAACTTTGTTCAGTGCAATCCTCAAAAGCTGAAATTTGATACACACAATTGAATCGTTTGGTGCAGTTGGCTCACAAAATTTCAGCTTGCTCAGAACATTTTAAGGCAAGTTACAGCTATTTGAAGTTTTGACCTATGCGGCGCGGTCGCGTCGCGGTTGGCTAACTTTGGTCAGAAGAATCCTAGCAACCTGAATTTTGTGAGGCATATAGAACAATCTATTCCATAGTGCTTATTAAATTTCAACGCGCTAGGACCGACCTGAGCAAAGCTAGCCGACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTTATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATASGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGCTGAAATTTTGTGAATC</pcr_primer_p1>
		<pcr_primer_p2>GAAATTTCACAGAGACAATCAAG</pcr_primer_p2>
		<pcr_amplicon_size>222</pcr_amplicon_size>
		<canonical_amplicon>GAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTC</canonical_amplicon>
		<polymorphic_amplicon>GAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATASGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20013</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>70658</contig_pos>
        <strand>+</strand>
        <context>ATWAAAACAG[A/G]CTTGATTGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAG</left_flank>
        <right_flank>CTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAATCATATTCTGCGCGCAAACCGGTGCTGAAAAACGGTTTTATATGATCCAAGCGGGCAAACAAGGCATGAACACAAGTGAATACGTTCATGTGATGCTATCCATGAGGAGTGTCGGGTTTGGGGTGCAATCGGCGGTTGGAAAGAAGCCTCGTAAGTTTTTGATGGCCTAGAAATTTAGAAATTCCAAAATAAACTAGGTCAGCTGAT</canonical>
            <polymorphic>ACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGRCTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAATCATATTCTGCGCGCAAACCGGTGCTGAAAAACGGTTTTATATGATCCAAGCGGGCAAACAAGGCATGAACACAAGTGAATACGTTCATGTGATGCTATCCATGAGGAGTGTCGGGTTTGGGGTGCAATCGGCGGTTGGAAAGAAGCCTCGTAAGTTTTTGATGGCCTAGAAATTTAGAAATTCCAAAATAAACTAGGTCAGCTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNNNNGTC</site>
                <isoschizomers>
                    <enzyme>AasI</enzyme>
                    <enzyme>DrdI</enzyme>
                    <enzyme>DseDI</enzyme>
                </isoschizomers>
                <canonical_bands>495 324 181</canonical_bands>
                <polymorphic_bands>505 495</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAATAAGGCTTCATTGTGCT</pcr_primer_p1>
		<pcr_primer_p2>ATTACTGTAACGATGCCAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>466</pcr_amplicon_size>
		<canonical_amplicon>TAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGRCTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAAT</canonical_amplicon>
		<polymorphic_amplicon>TAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGRCTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20014</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>70650</contig_pos>
        <strand>+</strand>
        <context>AGTCAACTAT[A/T]AAAACAGRCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTAT</left_flank>
        <right_flank>AAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAATCATATTCTGCGCGCAAACCGGTGCTGAAAAACGGTTTTATATGATCCAAGCGGGCAAACAAGGCATGAACACAAGTGAATACGTTCATGTGATGCTATCCATGAGGAGTGTCGGGTTTGGGGTGCAATCGGCGGTTGGAAAGAAGCCTCGTAAGTTTTTGATGGCCTAGAAATTTAGAAATTCCAAAATAAACTAGGT</canonical>
            <polymorphic>GTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATWAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAATCATATTCTGCGCGCAAACCGGTGCTGAAAAACGGTTTTATATGATCCAAGCGGGCAAACAAGGCATGAACACAAGTGAATACGTTCATGTGATGCTATCCATGAGGAGTGTCGGGTTTGGGGTGCAATCGGCGGTTGGAAAGAAGCCTCGTAAGTTTTTGATGGCCTAGAAATTTAGAAATTCCAAAATAAACTAGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>222 161 158 122 122 121 41 41 12</canonical_bands>
                <polymorphic_bands>222 162 161 158 122 122 41 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAATAAGGCTTCATTGTGCT</pcr_primer_p1>
		<pcr_primer_p2>ATTACTGTAACGATGCCAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>466</pcr_amplicon_size>
		<canonical_amplicon>TAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAAT</canonical_amplicon>
		<polymorphic_amplicon>TAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATWAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20021</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>70818</contig_pos>
        <strand>+</strand>
        <context>TTGGAACAAA[C/T]GGTTTGAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAA</left_flank>
        <right_flank>GGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAATCATATTCTGCGCGCAAACCGGTGCTGAAAAACGGTTTTATATGATCCAAGCGGGCAAACAAGGCATGAACACAAGTGAATACGTTCATGTGATGCTATCCATGAGGAGTGTCGGGTTTGGGGTGCAATCGGCGGTTGGAAAGAAGCCTCGTAAGTTTTTGATGGCCTAGAAATTTAGAAATTCCAAAATAAACTAGGTCAGCTGATTGTTTACAGTAAACTCTGGCCTTGCACCGATTTGGGAAGCATTTCAAGTGGCACCAGATGGATTGGAGGATTTGGCTAAAAGTGTGGCATCGAAAATGCTTGTGGTAGACTACAAGACTACAAACTACAAACTACAGTAACCCATTTTTCAGATTGATTT</canonical>
            <polymorphic>CAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAAYGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAATCATATTCTGCGCGCAAACCGGTGCTGAAAAACGGTTTTATATGATCCAAGCGGGCAAACAAGGCATGAACACAAGTGAATACGTTCATGTGATGCTATCCATGAGGAGTGTCGGGTTTGGGGTGCAATCGGCGGTTGGAAAGAAGCCTCGTAAGTTTTTGATGGCCTAGAAATTTAGAAATTCCAAAATAAACTAGGTCAGCTGATTGTTTACAGTAAACTCTGGCCTTGCACCGATTTGGGAAGCATTTCAAGTGGCACCAGATGGATTGGAGGATTTGGCTAAAAGTGTGGCATCGAAAATGCTTGTGGTAGACTACAAGACTACAAACTACAAACTACAGTAACCCATTTTTCAGATTGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTTGAATTTTTGTGAGTCAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTACTGTAACGATGCCAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>329</pcr_amplicon_size>
		<canonical_amplicon>ATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAAYGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20031</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>72657</contig_pos>
        <strand>+</strand>
        <context>AGGTCCGTCC[G/T]GAGCaaagtt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCC</left_flank>
        <right_flank>GAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACAATTTCAGCGTTCTAAGGCAATTTTCAGCCAAATTATAGCCATCTGAAGTTTTGACCTACGCGGCGCGGTCGCGTCGCGTTTGGCTAACTTTGCTTAGGACGGTCCTAGAGGTTCTAAATTTGATAAGCAAAATATAATAGTTTGGTGCAGTTGACTCATAAAATTTCAGCTCGCTAGCTCTATGCTGAGCAAAGTTACAGCTATTCGTAGTTATGACCTACGCGGCGCGGCTGCGTCGCGGTCGGCTAACTTTGCTCAGAGCGGTCCTAGGAAGCTGAAATTTTGCATTTTTACTGAAAATATCAGTTTCACTGCTCTGACCAAATTTCAAAGCTTTAGGACCGTCCTGAGCAAAGTCAGCAAGCCGCAACGCGTAGCTCAAAACTTCTATGGCCCGTAACTAGGCTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAGCGCTAGGACCCTCCTGAGATAAGTTAGCCGACCGCGACGCGACCGCACCGCGTAGGTCAAAACTTTAGATGCTTGTAGCTTGGCGCTGAGTGGGTCGATTTGGCTGAAATTTTTTAGGTAAACTGAGTAGTATTTGTGTTTTGATCCTGGCTAAATTAAGCATATAAAACTATGAAAAAAAATTCCAGAAAGTCAGTTTGGCCTATCAAAACGAGTCGAGCGACGTTTGGCACTTTTGGGGAAGCACTCGACCATTGGACACACCGATTTGTGGATTCCTCGGAAAATCGTGCCCCATCCCGTTTTTCGATCAATATCGATTATTGATTTTTGTATTCGTTATTGTTGCCGGA</canonical>
            <polymorphic>TACAATTTCAGCGTTCTAAGGCAATTTTCAGCCAAATTATAGCCATCTGAAGTTTTGACCTACGCGGCGCGGTCGCGTCGCGTTTGGCTAACTTTGCTTAGGACGGTCCTAGAGGTTCTAAATTTGATAAGCAAAATATAATAGTTTGGTGCAGTTGACTCATAAAATTTCAGCTCGCTAGCTCTATGCTGAGCAAAGTTACAGCTATTCGTAGTTATGACCTACGCGGCGCGGCTGCGTCGCGGTCGGCTAACTTTGCTCAGAGCGGTCCTAGGAAGCTGAAATTTTGCATTTTTACTGAAAATATCAGTTTCACTGCTCTGACCAAATTTCAAAGCTTTAGGACCGTCCTGAGCAAAGTCAGCAAGCCGCAACGCGTAGCTCAAAACTTCTATGGCCCGTAACTAGGCTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCKGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAGCGCTAGGACCCTCCTGAGATAAGTTAGCCGACCGCGACGCGACCGCACCGCGTAGGTCAAAACTTTAGATGCTTGTAGCTTGGCGCTGAGTGGGTCGATTTGGCTGAAATTTTTTAGGTAAACTGAGTAGTATTTGTGTTTTGATCCTGGCTAAATTAAGCATATAAAACTATGAAAAAAAATTCCAGAAAGTCAGTTTGGCCTATCAAAACGAGTCGAGCGACGTTTGGCACTTTTGGGGAAGCACTCGACCATTGGACACACCGATTTGTGGATTCCTCGGAAAATCGTGCCCCATCCCGTTTTTCGATCAATATCGATTATTGATTTTTGTATTCGTTATTGTTGCCGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCCGGA</site>
                <isoschizomers>
                    <enzyme>AccIII</enzyme>
                    <enzyme>BseAI</enzyme>
                    <enzyme>BsiMI</enzyme>
                    <enzyme>Bsp13I</enzyme>
                    <enzyme>BspEI</enzyme>
                    <enzyme>BspMII</enzyme>
                    <enzyme>Kpn2I</enzyme>
                    <enzyme>MroI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>498 498 4</canonical_bands>
                <polymorphic_bands>996 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCCTAGAAATCTGCTTTTGTTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTGAAATTTCGCAGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>GTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAG</canonical_amplicon>
		<polymorphic_amplicon>GTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCKGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20032</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>72603</contig_pos>
        <strand></strand>
        <context>TGTTAGCCAA[C/T]YAAACCAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCCCGTAACTAGGCTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAA</left_flank>
        <right_flank>TAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAAAGGTTCGAAATTTGATAAGCAAAGTACAATCGTTTAGTGCAATTGACTCATACAATTTCAGCGTTCTAAGGCAATTTTCAGCCAAATTATAGCCATCTGAAGTTTTGACCTACGCGGCGCGGTCGCGTCGCGTTTGGCTAACTTTGCTTAGGACGGTCCTAGAGGTTCTAAATTTGATAAGCAAAATATAATAGTTTGGTGCAGTTGACTCATAAAATTTCAGCTCGCTAGCTCTATGCTGAGCAAAGTTACAGCTATTCGTAGTTATGACCTACGCGGCGCGGCTGCGTCGCGGTCGGCTAACTTTGCTCAGAGCGGTCCTAGGAAGCTGAAATTTTGCATTTTTACTGAAAATATCAGTTTCACTGCTCTGACCAAATTTCAAAGCTTTAGGACCGTCCTGAGCAAAGTCAGCAAGCCGCAACGCGTAGCTCAAAACTTCTATGGCCCGTAACTAGGCTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAGCGCTAGGACCCTCCTGAGATAAGTTAGCCGACCGCGACGCGACCGCACCGCGTAGGTCAAAACTTTAGATGCTTGTAGCTTGGCGCTGAGTGGGTCGATTTGGCTGAAATTTTTTAGGTAAACTGAGTAGTATTTGTGTTTTGATCCTGGCTAAATTAAGCATATAAAACTATGAAAAAAAATTCCAGAAAGTCAGTTTGGCCTATCAAAACGAGTCGAGCGACGTTTGGCACTTTTGGGGAAGCACTCGACCATTGGACACACCGATTTGTGGATTCCTCGGAAAATCGTGCCCCATC</canonical>
            <polymorphic>CTAAAGGTTCGAAATTTGATAAGCAAAGTACAATCGTTTAGTGCAATTGACTCATACAATTTCAGCGTTCTAAGGCAATTTTCAGCCAAATTATAGCCATCTGAAGTTTTGACCTACGCGGCGCGGTCGCGTCGCGTTTGGCTAACTTTGCTTAGGACGGTCCTAGAGGTTCTAAATTTGATAAGCAAAATATAATAGTTTGGTGCAGTTGACTCATAAAATTTCAGCTCGCTAGCTCTATGCTGAGCAAAGTTACAGCTATTCGTAGTTATGACCTACGCGGCGCGGCTGCGTCGCGGTCGGCTAACTTTGCTCAGAGCGGTCCTAGGAAGCTGAAATTTTGCATTTTTACTGAAAATATCAGTTTCACTGCTCTGACCAAATTTCAAAGCTTTAGGACCGTCCTGAGCAAAGTCAGCAAGCCGCAACGCGTAGCTCAAAACTTCTATGGCCCGTAACTAGGCTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAAYTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAGCGCTAGGACCCTCCTGAGATAAGTTAGCCGACCGCGACGCGACCGCACCGCGTAGGTCAAAACTTTAGATGCTTGTAGCTTGGCGCTGAGTGGGTCGATTTGGCTGAAATTTTTTAGGTAAACTGAGTAGTATTTGTGTTTTGATCCTGGCTAAATTAAGCATATAAAACTATGAAAAAAAATTCCAGAAAGTCAGTTTGGCCTATCAAAACGAGTCGAGCGACGTTTGGCACTTTTGGGGAAGCACTCGACCATTGGACACACCGATTTGTGGATTCCTCGGAAAATCGTGCCCCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTAGCTCAAAACTTCTATGG</pcr_primer_p1>
		<pcr_primer_p2>ATTTCGCAGAGACAATCAAG</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>CGTAGCTCAAAACTTCTATGGCCCGTAACTAGGCTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAAT</canonical_amplicon>
		<polymorphic_amplicon>CGTAGCTCAAAACTTCTATGGCCCGTAACTAGGCTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAAYTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20114</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>21071</contig_pos>
        <strand>+</strand>
        <context>AATGCATCTC[G/T]CCATTCTCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGATATTCTCTCCTGACCACCTGTCATTCACTGATCCCTAATGCATCTC</left_flank>
        <right_flank>CCATTCTCACCCACTGCTTCACCCCTTCCTCACCACCCGCATCTCCCCCT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAACATTTGTCTACTTATGGAATATTGGTGATGATATGATGAAAAATTTTCCAGTTGACTACATTTTCACATCTTTCACAGGAGCCGAAATAAATAGGCTTAAAGTGCAAGTTTGCTTTGAGAAAATCATAGTAATATTTCGAAACAAGAATGGAGTAATTGCTAACCACGCATTCAACATATTGATATCTGAAAAAAATGATTCGTACTTCAAAATTCTTTTTTTTTTCCAATATTGTATTGTATTGTATTGTATTTATTACGTTTAAAAAAACATGGATGAAAGAAAAATATTGTGCTATAATTCAACTGGAAGGACAGCTTTTACTATCTGCATTCTCTGATACTATCATATCATTGAAACTTTTGAAAAATGATTTAAACTTTTGAAAAATGATTATCAGGATCATAAAGTAAAGATACTACGATTTTCATGATTTCTGAAAAAAAGATATTCTCTCCTGACCACCTGTCATTCACTGATCCCTAATGCATCTCGCCATTCTCACCCACTGCTTCACCCCTTCCTCACCACCCGCATCTCCCCCTGTTTCTTTTTCCATTTTCTCAATTTATGTGATCGGAGAACTTTCGGGGGCCCCGATGGCGCGGGTAAGTCGATGAGAGGAGTGCGGCGAGAGCAGCAATCGCGAGTGAGTTTTGTGCCCATCATCTTCTAGGAAACCTCCATCGGATGCCTGATGTTAGCACCACGGGGGCGGTGCGCCTCTTGTGTAAAGTTGTTGAGATTTGCTCAAACAGCTAGCTCTCCTCTTTCTCTCCATCTCCGAAGCCTCCTCGGGGTGCCGCGACAGTGTAAAAGGGAGACAAGAGCGACGGATATTCTTCAGTCAGTCTCATTCAGCTACTCAACACAGTCCACAAAATGGTGAGTTTCCATGAGTTCTACTAAAAGACTTATATCAGAAGACAAACTTATATTATAAGACTTACATCGATTAACTTATACCTTTTATATCTCATACCATATACCTTACA</canonical>
            <polymorphic>CAAACATTTGTCTACTTATGGAATATTGGTGATGATATGATGAAAAATTTTCCAGTTGACTACATTTTCACATCTTTCACAGGAGCCGAAATAAATAGGCTTAAAGTGCAAGTTTGCTTTGAGAAAATCATAGTAATATTTCGAAACAAGAATGGAGTAATTGCTAACCACGCATTCAACATATTGATATCTGAAAAAAATGATTCGTACTTCAAAATTCTTTTTTTTTTCCAATATTGTATTGTATTGTATTGTATTTATTACGTTTAAAAAAACATGGATGAAAGAAAAATATTGTGCTATAATTCAACTGGAAGGACAGCTTTTACTATCTGCATTCTCTGATACTATCATATCATTGAAACTTTTGAAAAATGATTTAAACTTTTGAAAAATGATTATCAGGATCATAAAGTAAAGATACTACGATTTTCATGATTTCTGAAAAAAAGATATTCTCTCCTGACCACCTGTCATTCACTGATCCCTAATGCATCTCKCCATTCTCACCCACTGCTTCACCCCTTCCTCACCACCCGCATCTCCCCCTGTTTCTTTTTCCATTTTCTCAATTTATGTGATCGGAGAACTTTCGGGGGCCCCGATGGCGCGGGTAAGTCGATGAGAGGAGTGCGGCGAGAGCAGCAATCGCGAGTGAGTTTTGTGCCCATCATCTTCTAGGAAACCTCCATCGGATGCCTGATGTTAGCACCACGGGGGCGGTGCGCCTCTTGTGTAAAGTTGTTGAGATTTGCTCAAACAGCTAGCTCTCCTCTTTCTCTCCATCTCCGAAGCCTCCTCGGGGTGCCGCGACAGTGTAAAAGGGAGACAAGAGCGACGGATATTCTTCAGTCAGTCTCATTCAGCTACTCAACACAGTCCACAAAATGGTGAGTTTCCATGAGTTCTACTAAAAGACTTATATCAGAAGACAAACTTATATTATAAGACTTACATCGATTAACTTATACCTTTTATATCTCATACCATATACCTTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGATATTCTCTCCTGACCAC</pcr_primer_p1>
		<pcr_primer_p2>ATGGAGGTTTCCTAGAAGATG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAAAGATATTCTCTCCTGACCACCTGTCATTCACTGATCCCTAATGCATCTCGCCATTCTCACCCACTGCTTCACCCCTTCCTCACCACCCGCATCTCCCCCTGTTTCTTTTTCCATTTTCTCAATTTATGTGATCGGAGAACTTTCGGGGGCCCCGATGGCGCGGGTAAGTCGATGAGAGGAGTGCGGCGAGAGCAGCAATCGCGAGTGAGTTTTGTGCCCATCATCTTCTAGGAAACCTCCAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGATATTCTCTCCTGACCACCTGTCATTCACTGATCCCTAATGCATCTCKCCATTCTCACCCACTGCTTCACCCCTTCCTCACCACCCGCATCTCCCCCTGTTTCTTTTTCCATTTTCTCAATTTATGTGATCGGAGAACTTTCGGGGGCCCCGATGGCGCGGGTAAGTCGATGAGAGGAGTGCGGCGAGAGCAGCAATCGCGAGTGAGTTTTGTGCCCATCATCTTCTAGGAAACCTCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20115</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>21116</contig_pos>
        <strand>+</strand>
        <context>ACCCGCATCT[C/T]CCCCTGTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTCGCCATTCTCACCCACTGCTTCACCCCTTCCTCACCACCCGCATCT</left_flank>
        <right_flank>CCCCTGTTTCTTTTTCCATTTTCTCAATTTATGTGATCGGAGAACTTTCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTCCAGTTGACTACATTTTCACATCTTTCACAGGAGCCGAAATAAATAGGCTTAAAGTGCAAGTTTGCTTTGAGAAAATCATAGTAATATTTCGAAACAAGAATGGAGTAATTGCTAACCACGCATTCAACATATTGATATCTGAAAAAAATGATTCGTACTTCAAAATTCTTTTTTTTTTCCAATATTGTATTGTATTGTATTGTATTTATTACGTTTAAAAAAACATGGATGAAAGAAAAATATTGTGCTATAATTCAACTGGAAGGACAGCTTTTACTATCTGCATTCTCTGATACTATCATATCATTGAAACTTTTGAAAAATGATTTAAACTTTTGAAAAATGATTATCAGGATCATAAAGTAAAGATACTACGATTTTCATGATTTCTGAAAAAAAGATATTCTCTCCTGACCACCTGTCATTCACTGATCCCTAATGCATCTCGCCATTCTCACCCACTGCTTCACCCCTTCCTCACCACCCGCATCTCCCCCTGTTTCTTTTTCCATTTTCTCAATTTATGTGATCGGAGAACTTTCGGGGGCCCCGATGGCGCGGGTAAGTCGATGAGAGGAGTGCGGCGAGAGCAGCAATCGCGAGTGAGTTTTGTGCCCATCATCTTCTAGGAAACCTCCATCGGATGCCTGATGTTAGCACCACGGGGGCGGTGCGCCTCTTGTGTAAAGTTGTTGAGATTTGCTCAAACAGCTAGCTCTCCTCTTTCTCTCCATCTCCGAAGCCTCCTCGGGGTGCCGCGACAGTGTAAAAGGGAGACAAGAGCGACGGATATTCTTCAGTCAGTCTCATTCAGCTACTCAACACAGTCCACAAAATGGTGAGTTTCCATGAGTTCTACTAAAAGACTTATATCAGAAGACAAACTTATATTATAAGACTTACATCGATTAACTTATACCTTTTATATCTCATACCATATACCTTACACCTTATATCATAACATGAGTAAGTCTATTCAAAACTCCAATTTCC</canonical>
            <polymorphic>AATTTTCCAGTTGACTACATTTTCACATCTTTCACAGGAGCCGAAATAAATAGGCTTAAAGTGCAAGTTTGCTTTGAGAAAATCATAGTAATATTTCGAAACAAGAATGGAGTAATTGCTAACCACGCATTCAACATATTGATATCTGAAAAAAATGATTCGTACTTCAAAATTCTTTTTTTTTTCCAATATTGTATTGTATTGTATTGTATTTATTACGTTTAAAAAAACATGGATGAAAGAAAAATATTGTGCTATAATTCAACTGGAAGGACAGCTTTTACTATCTGCATTCTCTGATACTATCATATCATTGAAACTTTTGAAAAATGATTTAAACTTTTGAAAAATGATTATCAGGATCATAAAGTAAAGATACTACGATTTTCATGATTTCTGAAAAAAAGATATTCTCTCCTGACCACCTGTCATTCACTGATCCCTAATGCATCTCGCCATTCTCACCCACTGCTTCACCCCTTCCTCACCACCCGCATCTYCCCCTGTTTCTTTTTCCATTTTCTCAATTTATGTGATCGGAGAACTTTCGGGGGCCCCGATGGCGCGGGTAAGTCGATGAGAGGAGTGCGGCGAGAGCAGCAATCGCGAGTGAGTTTTGTGCCCATCATCTTCTAGGAAACCTCCATCGGATGCCTGATGTTAGCACCACGGGGGCGGTGCGCCTCTTGTGTAAAGTTGTTGAGATTTGCTCAAACAGCTAGCTCTCCTCTTTCTCTCCATCTCCGAAGCCTCCTCGGGGTGCCGCGACAGTGTAAAAGGGAGACAAGAGCGACGGATATTCTTCAGTCAGTCTCATTCAGCTACTCAACACAGTCCACAAAATGGTGAGTTTCCATGAGTTCTACTAAAAGACTTATATCAGAAGACAAACTTATATTATAAGACTTACATCGATTAACTTATACCTTTTATATCTCATACCATATACCTTACACCTTATATCATAACATGAGTAAGTCTATTCAAAACTCCAATTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGATATTCTCTCCTGACCAC</pcr_primer_p1>
		<pcr_primer_p2>ATGGAGGTTTCCTAGAAGATG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAAAGATATTCTCTCCTGACCACCTGTCATTCACTGATCCCTAATGCATCTCGCCATTCTCACCCACTGCTTCACCCCTTCCTCACCACCCGCATCTCCCCCTGTTTCTTTTTCCATTTTCTCAATTTATGTGATCGGAGAACTTTCGGGGGCCCCGATGGCGCGGGTAAGTCGATGAGAGGAGTGCGGCGAGAGCAGCAATCGCGAGTGAGTTTTGTGCCCATCATCTTCTAGGAAACCTCCAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGATATTCTCTCCTGACCACCTGTCATTCACTGATCCCTAATGCATCTCGCCATTCTCACCCACTGCTTCACCCCTTCCTCACCACCCGCATCTYCCCCTGTTTCTTTTTCCATTTTCTCAATTTATGTGATCGGAGAACTTTCGGGGGCCCCGATGGCGCGGGTAAGTCGATGAGAGGAGTGCGGCGAGAGCAGCAATCGCGAGTGAGTTTTGTGCCCATCATCTTCTAGGAAACCTCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20116</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>21497</contig_pos>
        <strand>+</strand>
        <context>AGACTTATAT[A/C]AGWAGACAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACAGTCCACAAAATGGTGAGTTTCCATGAGTTCTACTAAAAGACTTATAT</left_flank>
        <right_flank>AGAAGACAAACTTATATTATAAGACTTACATCGATTAACTTATACCTTTT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATTTTCATGATTTCTGAAAAAAAGATATTCTCTCCTGACCACCTGTCATTCACTGATCCCTAATGCATCTCGCCATTCTCACCCACTGCTTCACCCCTTCCTCACCACCCGCATCTCCCCCTGTTTCTTTTTCCATTTTCTCAATTTATGTGATCGGAGAACTTTCGGGGGCCCCGATGGCGCGGGTAAGTCGATGAGAGGAGTGCGGCGAGAGCAGCAATCGCGAGTGAGTTTTGTGCCCATCATCTTCTAGGAAACCTCCATCGGATGCCTGATGTTAGCACCACGGGGGCGGTGCGCCTCTTGTGTAAAGTTGTTGAGATTTGCTCAAACAGCTAGCTCTCCTCTTTCTCTCCATCTCCGAAGCCTCCTCGGGGTGCCGCGACAGTGTAAAAGGGAGACAAGAGCGACGGATATTCTTCAGTCAGTCTCATTCAGCTACTCAACACAGTCCACAAAATGGTGAGTTTCCATGAGTTCTACTAAAAGACTTATATCAGAAGACAAACTTATATTATAAGACTTACATCGATTAACTTATACCTTTTATATCTCATACCATATACCTTACACCTTATATCATAACATGAGTAAGTCTATTCAAAACTCCAATTTCCTATTTATCATCTAAACTAGGATAGTTAGTTGACAAAAAATGTAAAACCCTTTTCTTGCAATTACTAAATTTGATGTTTCAGTCCAAGGCCGCCAAGAAGAAGTCCTCCAAGAAGCGCTCGGGATCCGAGGCCGCTCAATTCGACCAGAAGACCATCCAAGAATTCAAGGAGGCTTTCGGTATCATGGACCAGAACAAGGACGGAGTCATCGACAAGGTTTGTCTTATCTTGAAGAATAGTAGCTTCGAAAATTGGTTTGTTTTCAGTCCGATCTCAAGGATCTCTACGCTTCCATGGGACAAATCGCCCCAGACAGCCAGATCGACGCCATGATCAAGGAGGCTTCCGGACCAATCAACTTCACCGTTTTCCTCACCCTCT</canonical>
            <polymorphic>CGATTTTCATGATTTCTGAAAAAAAGATATTCTCTCCTGACCACCTGTCATTCACTGATCCCTAATGCATCTCGCCATTCTCACCCACTGCTTCACCCCTTCCTCACCACCCGCATCTCCCCCTGTTTCTTTTTCCATTTTCTCAATTTATGTGATCGGAGAACTTTCGGGGGCCCCGATGGCGCGGGTAAGTCGATGAGAGGAGTGCGGCGAGAGCAGCAATCGCGAGTGAGTTTTGTGCCCATCATCTTCTAGGAAACCTCCATCGGATGCCTGATGTTAGCACCACGGGGGCGGTGCGCCTCTTGTGTAAAGTTGTTGAGATTTGCTCAAACAGCTAGCTCTCCTCTTTCTCTCCATCTCCGAAGCCTCCTCGGGGTGCCGCGACAGTGTAAAAGGGAGACAAGAGCGACGGATATTCTTCAGTCAGTCTCATTCAGCTACTCAACACAGTCCACAAAATGGTGAGTTTCCATGAGTTCTACTAAAAGACTTATATMAGAAGACAAACTTATATTATAAGACTTACATCGATTAACTTATACCTTTTATATCTCATACCATATACCTTACACCTTATATCATAACATGAGTAAGTCTATTCAAAACTCCAATTTCCTATTTATCATCTAAACTAGGATAGTTAGTTGACAAAAAATGTAAAACCCTTTTCTTGCAATTACTAAATTTGATGTTTCAGTCCAAGGCCGCCAAGAAGAAGTCCTCCAAGAAGCGCTCGGGATCCGAGGCCGCTCAATTCGACCAGAAGACCATCCAAGAATTCAAGGAGGCTTTCGGTATCATGGACCAGAACAAGGACGGAGTCATCGACAAGGTTTGTCTTATCTTGAAGAATAGTAGCTTCGAAAATTGGTTTGTTTTCAGTCCGATCTCAAGGATCTCTACGCTTCCATGGGACAAATCGCCCCAGACAGCCAGATCGACGCCATGATCAAGGAGGCTTCCGGACCAATCAACTTCACCGTTTTCCTCACCCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>244 143 141 137 112 110 96 17</canonical_bands>
                <polymorphic_bands>381 143 141 112 110 96 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTCTCATTCAGCTACTCAACAC</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAAAGGGTTTTACATTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGTCTCATTCAGCTACTCAACACAGTCCACAAAATGGTGAGTTTCCATGAGTTCTACTAAAAGACTTATATCAGAAGACAAACTTATATTATAAGACTTACATCGATTAACTTATACCTTTTATATCTCATACCATATACCTTACACCTTATATCATAACATGAGTAAGTCTATTCAAAACTCCAATTTCCTATTTATCATCTAAACTAGGATAGTTAGTTGACAAAAAATGTAAAACCCTTTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>AGTCTCATTCAGCTACTCAACACAGTCCACAAAATGGTGAGTTTCCATGAGTTCTACTAAAAGACTTATATMAGAAGACAAACTTATATTATAAGACTTACATCGATTAACTTATACCTTTTATATCTCATACCATATACCTTACACCTTATATCATAACATGAGTAAGTCTATTCAAAACTCCAATTTCCTATTTATCATCTAAACTAGGATAGTTAGTTGACAAAAAATGTAAAACCCTTTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20117</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>21500</contig_pos>
        <strand>+</strand>
        <context>CTTATATMAG[A/T]AGACAAACTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCCACAAAATGGTGAGTTTCCATGAGTTCTACTAAAAGACTTATATCAG</left_flank>
        <right_flank>AGACAAACTTATATTATAAGACTTACATCGATTAACTTATACCTTTTATA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCATGATTTCTGAAAAAAAGATATTCTCTCCTGACCACCTGTCATTCACTGATCCCTAATGCATCTCGCCATTCTCACCCACTGCTTCACCCCTTCCTCACCACCCGCATCTCCCCCTGTTTCTTTTTCCATTTTCTCAATTTATGTGATCGGAGAACTTTCGGGGGCCCCGATGGCGCGGGTAAGTCGATGAGAGGAGTGCGGCGAGAGCAGCAATCGCGAGTGAGTTTTGTGCCCATCATCTTCTAGGAAACCTCCATCGGATGCCTGATGTTAGCACCACGGGGGCGGTGCGCCTCTTGTGTAAAGTTGTTGAGATTTGCTCAAACAGCTAGCTCTCCTCTTTCTCTCCATCTCCGAAGCCTCCTCGGGGTGCCGCGACAGTGTAAAAGGGAGACAAGAGCGACGGATATTCTTCAGTCAGTCTCATTCAGCTACTCAACACAGTCCACAAAATGGTGAGTTTCCATGAGTTCTACTAAAAGACTTATATCAGAAGACAAACTTATATTATAAGACTTACATCGATTAACTTATACCTTTTATATCTCATACCATATACCTTACACCTTATATCATAACATGAGTAAGTCTATTCAAAACTCCAATTTCCTATTTATCATCTAAACTAGGATAGTTAGTTGACAAAAAATGTAAAACCCTTTTCTTGCAATTACTAAATTTGATGTTTCAGTCCAAGGCCGCCAAGAAGAAGTCCTCCAAGAAGCGCTCGGGATCCGAGGCCGCTCAATTCGACCAGAAGACCATCCAAGAATTCAAGGAGGCTTTCGGTATCATGGACCAGAACAAGGACGGAGTCATCGACAAGGTTTGTCTTATCTTGAAGAATAGTAGCTTCGAAAATTGGTTTGTTTTCAGTCCGATCTCAAGGATCTCTACGCTTCCATGGGACAAATCGCCCCAGACAGCCAGATCGACGCCATGATCAAGGAGGCTTCCGGACCAATCAACTTCACCGTTTTCCTCACCCTCTTCG</canonical>
            <polymorphic>TTTTCATGATTTCTGAAAAAAAGATATTCTCTCCTGACCACCTGTCATTCACTGATCCCTAATGCATCTCGCCATTCTCACCCACTGCTTCACCCCTTCCTCACCACCCGCATCTCCCCCTGTTTCTTTTTCCATTTTCTCAATTTATGTGATCGGAGAACTTTCGGGGGCCCCGATGGCGCGGGTAAGTCGATGAGAGGAGTGCGGCGAGAGCAGCAATCGCGAGTGAGTTTTGTGCCCATCATCTTCTAGGAAACCTCCATCGGATGCCTGATGTTAGCACCACGGGGGCGGTGCGCCTCTTGTGTAAAGTTGTTGAGATTTGCTCAAACAGCTAGCTCTCCTCTTTCTCTCCATCTCCGAAGCCTCCTCGGGGTGCCGCGACAGTGTAAAAGGGAGACAAGAGCGACGGATATTCTTCAGTCAGTCTCATTCAGCTACTCAACACAGTCCACAAAATGGTGAGTTTCCATGAGTTCTACTAAAAGACTTATATCAGWAGACAAACTTATATTATAAGACTTACATCGATTAACTTATACCTTTTATATCTCATACCATATACCTTACACCTTATATCATAACATGAGTAAGTCTATTCAAAACTCCAATTTCCTATTTATCATCTAAACTAGGATAGTTAGTTGACAAAAAATGTAAAACCCTTTTCTTGCAATTACTAAATTTGATGTTTCAGTCCAAGGCCGCCAAGAAGAAGTCCTCCAAGAAGCGCTCGGGATCCGAGGCCGCTCAATTCGACCAGAAGACCATCCAAGAATTCAAGGAGGCTTTCGGTATCATGGACCAGAACAAGGACGGAGTCATCGACAAGGTTTGTCTTATCTTGAAGAATAGTAGCTTCGAAAATTGGTTTGTTTTCAGTCCGATCTCAAGGATCTCTACGCTTCCATGGGACAAATCGCCCCAGACAGCCAGATCGACGCCATGATCAAGGAGGCTTCCGGACCAATCAACTTCACCGTTTTCCTCACCCTCTTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>244 143 141 137 115 110 96 14</canonical_bands>
                <polymorphic_bands>381 143 141 115 110 96 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTCTCATTCAGCTACTCAACAC</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAAAGGGTTTTACATTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGTCTCATTCAGCTACTCAACACAGTCCACAAAATGGTGAGTTTCCATGAGTTCTACTAAAAGACTTATATCAGAAGACAAACTTATATTATAAGACTTACATCGATTAACTTATACCTTTTATATCTCATACCATATACCTTACACCTTATATCATAACATGAGTAAGTCTATTCAAAACTCCAATTTCCTATTTATCATCTAAACTAGGATAGTTAGTTGACAAAAAATGTAAAACCCTTTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>AGTCTCATTCAGCTACTCAACACAGTCCACAAAATGGTGAGTTTCCATGAGTTCTACTAAAAGACTTATATCAGWAGACAAACTTATATTATAAGACTTACATCGATTAACTTATACCTTTTATATCTCATACCATATACCTTACACCTTATATCATAACATGAGTAAGTCTATTCAAAACTCCAATTTCCTATTTATCATCTAAACTAGGATAGTTAGTTGACAAAAAATGTAAAACCCTTTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20118</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>25396</contig_pos>
        <strand>+</strand>
        <context>TCCTTTTTTT[A/T]AAATTGAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCAGTTTTCAAAGTCACCATGAACCTGAAATTGAGATTATCCTTTTTTT</left_flank>
        <right_flank>AAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCAATATAGGCAGACAAGGGCATAGCAATTACAGTTCCAAAGTATGATCTGAAAAAATGCTATATTCAGTTTTCAGTCTTTGTTTCATGGTTCCCAACCCCGAAAACGCAAAAGTAGCCAATTTCGTTTGCTCCAGCGGTGGTGCCCATCTACTCCAGATAACATGCATCGCTGGATATGTGACTCCTTCCAGTAATCCCTCCATGAAACGAGCAAACACCAGCATTCCCCAACCCATTCTGGCGAATGGAGGAGTGAGAAGCGTGAAGACAGCGGTTCCTATAAATAAATAAGAGATATGGGAGATGGGTAGGAGAGCCCTACCAAATGTACCAGCGAAAAAGACGGTCTTTGCTCCATGTGTGTAGGCGAGATATCCTCCGGGTAGTTGGGACACAATGTAACCATAGAAGAAGGAGCTGAGAACGACTCCTTGGGTCATTGGAGTCCAGTTTTCAAAGTCACCATGAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTG</canonical>
            <polymorphic>CTCCAATATAGGCAGACAAGGGCATAGCAATTACAGTTCCAAAGTATGATCTGAAAAAATGCTATATTCAGTTTTCAGTCTTTGTTTCATGGTTCCCAACCCCGAAAACGCAAAAGTAGCCAATTTCGTTTGCTCCAGCGGTGGTGCCCATCTACTCCAGATAACATGCATCGCTGGATATGTGACTCCTTCCAGTAATCCCTCCATGAAACGAGCAAACACCAGCATTCCCCAACCCATTCTGGCGAATGGAGGAGTGAGAAGCGTGAAGACAGCGGTTCCTATAAATAAATAAGAGATATGGGAGATGGGTAGGAGAGCCCTACCAAATGTACCAGCGAAAAAGACGGTCTTTGCTCCATGTGTGTAGGCGAGATATCCTCCGGGTAGTTGGGACACAATGTAACCATAGAAGAAGGAGCTGAGAACGACTCCTTGGGTCATTGGAGTCCAGTTTTCAAAGTCACCATGAACCTGAAATTGAGATTATCCTTTTTTTWAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAGTTTTCAAAGTCACCAT</pcr_primer_p1>
		<pcr_primer_p2>TCATCCAAACTGTTCTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>572</pcr_amplicon_size>
		<canonical_amplicon>CCAGTTTTCAAAGTCACCATGAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAG</canonical_amplicon>
		<polymorphic_amplicon>CCAGTTTTCAAAGTCACCATGAACCTGAAATTGAGATTATCCTTTTTTTWAAATTGAACTCAAAATGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20119</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>34728</contig_pos>
        <strand>+</strand>
        <context>GTGCACTTTA[C/G]ACAAACCCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTATATCTCTTTGGCCGGTACTGTAGTTCATGAAGAACACGTGCACTTTA</left_flank>
        <right_flank>ACAAACCCAAAACTGTAGTTGCTGTCCTGATGTTTGAATTACTGAATTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTGAGTGTGTTAAGTTCACTTGTTTTTCATGAACTACAATACCACTCAATAAAATATACAAAAACATATTTTTCAGTCGATTTCCGGCATTTTTAAGAGTCTGGAGCTCGGAGGCCAAGTTCCCGATAATTTTGAAAATACCTAGATCCAAAACTATACCTAGATCCAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCAAGTTTTTCAGTTATTAGTTGATTTCTGAGAAACACCCATTTTGACCGGTTTTTGTACTGAAAACGTGAAAAACATGTGTCTTTCGGAAATCGGTAAAAATCTGAAAAACTTGAAATTTTCAAAAAATGCTGTGAGTGTTTTACATTCTCTAAAATTTTCAAAATGATCGGAAACTTGGCCGCCGAGCTTCAGACTTTTGAAAATAGTCAAAATGGGCGGACATCAGATGAAAAATCCGTTTCTGTATATCTCTTTGGCCGGTACTGTAGTTCATGAAGAACACGTGCACTTTAGACAAACCCAAAACTGTAGTTGCTGTCCTGATGTTTGAATTACTGAATTTGGAGATCAACTAACCTCTATTGCGTCTTCAACTGGGTCTTTGTCGCTTTTGGGTCTGTCGAAGGGGTCCATTTTGACTGGTGTGCAATCCTAAAAAACACATTTCTCAATTTCCAACTATCTATGCACAATGAAACTACCTCCGGCTCATTTTCAGTGCTGAAAAACACATCAGGTGGTGCTGTTGGCACCTTACCCGTGTCTACTCCATTTGCATTCATTGGGACTGCTGCGGCTGTTGTCGCCATCCCGTCGCTCATCGATTTCTGCAATTGTTGAACCATAAACAGGGTGGGGGAAAAATAAGAAAAAGAAGAACAAGTGGTTGAAAAACGAAAGAATCATGGAGCATCCTCCGATATCAACAAGGGAAAAAAGACGAAAAAACAGGGAGGAGGGCAGAGGGAGAGAGATTGTGTAATATAGGAAAAAGAGCATTTCTTGTTCTTTGC</canonical>
            <polymorphic>ATTTTGAGTGTGTTAAGTTCACTTGTTTTTCATGAACTACAATACCACTCAATAAAATATACAAAAACATATTTTTCAGTCGATTTCCGGCATTTTTAAGAGTCTGGAGCTCGGAGGCCAAGTTCCCGATAATTTTGAAAATACCTAGATCCAAAACTATACCTAGATCCAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCAAGTTTTTCAGTTATTAGTTGATTTCTGAGAAACACCCATTTTGACCGGTTTTTGTACTGAAAACGTGAAAAACATGTGTCTTTCGGAAATCGGTAAAAATCTGAAAAACTTGAAATTTTCAAAAAATGCTGTGAGTGTTTTACATTCTCTAAAATTTTCAAAATGATCGGAAACTTGGCCGCCGAGCTTCAGACTTTTGAAAATAGTCAAAATGGGCGGACATCAGATGAAAAATCCGTTTCTGTATATCTCTTTGGCCGGTACTGTAGTTCATGAAGAACACGTGCACTTTASACAAACCCAAAACTGTAGTTGCTGTCCTGATGTTTGAATTACTGAATTTGGAGATCAACTAACCTCTATTGCGTCTTCAACTGGGTCTTTGTCGCTTTTGGGTCTGTCGAAGGGGTCCATTTTGACTGGTGTGCAATCCTAAAAAACACATTTCTCAATTTCCAACTATCTATGCACAATGAAACTACCTCCGGCTCATTTTCAGTGCTGAAAAACACATCAGGTGGTGCTGTTGGCACCTTACCCGTGTCTACTCCATTTGCATTCATTGGGACTGCTGCGGCTGTTGTCGCCATCCCGTCGCTCATCGATTTCTGCAATTGTTGAACCATAAACAGGGTGGGGGAAAAATAAGAAAAAGAAGAACAAGTGGTTGAAAAACGAAAGAATCATGGAGCATCCTCCGATATCAACAAGGGAAAAAAGACGAAAAAACAGGGAGGAGGGCAGAGGGAGAGAGATTGTGTAATATAGGAAAAAGAGCATTTCTTGTTCTTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTTAAGTTCACTTGTTTTTCAT</pcr_primer_p1>
		<pcr_primer_p2>TCTCCAAATTCAGTAATTCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>545</pcr_amplicon_size>
		<canonical_amplicon>GTGTTAAGTTCACTTGTTTTTCATGAACTACAATACCACTCAATAAAATATACAAAAACATATTTTTCAGTCGATTTCCGGCATTTTTAAGAGTCTGGAGCTCGGAGGCCAAGTTCCCGATAATTTTGAAAATACCTAGATCCAAAACTATACCTAGATCCAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCAAGTTTTTCAGTTATTAGTTGATTTCTGAGAAACACCCATTTTGACCGGTTTTTGTACTGAAAACGTGAAAAACATGTGTCTTTCGGAAATCGGTAAAAATCTGAAAAACTTGAAATTTTCAAAAAATGCTGTGAGTGTTTTACATTCTCTAAAATTTTCAAAATGATCGGAAACTTGGCCGCCGAGCTTCAGACTTTTGAAAATAGTCAAAATGGGCGGACATCAGATGAAAAATCCGTTTCTGTATATCTCTTTGGCCGGTACTGTAGTTCATGAAGAACACGTGCACTTTAGACAAACCCAAAACTGTAGTTGCTGTCCTGATGTTTGAATTACTGAATTTGGAGA</canonical_amplicon>
		<polymorphic_amplicon>GTGTTAAGTTCACTTGTTTTTCATGAACTACAATACCACTCAATAAAATATACAAAAACATATTTTTCAGTCGATTTCCGGCATTTTTAAGAGTCTGGAGCTCGGAGGCCAAGTTCCCGATAATTTTGAAAATACCTAGATCCAAAACTATACCTAGATCCAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCAAGTTTTTCAGTTATTAGTTGATTTCTGAGAAACACCCATTTTGACCGGTTTTTGTACTGAAAACGTGAAAAACATGTGTCTTTCGGAAATCGGTAAAAATCTGAAAAACTTGAAATTTTCAAAAAATGCTGTGAGTGTTTTACATTCTCTAAAATTTTCAAAATGATCGGAAACTTGGCCGCCGAGCTTCAGACTTTTGAAAATAGTCAAAATGGGCGGACATCAGATGAAAAATCCGTTTCTGTATATCTCTTTGGCCGGTACTGTAGTTCATGAAGAACACGTGCACTTTASACAAACCCAAAACTGTAGTTGCTGTCCTGATGTTTGAATTACTGAATTTGGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20120</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>34879</contig_pos>
        <strand>+</strand>
        <context>AAAAAACACA[C/T]TTCTCAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTCTGTCGAAGGGGTCCATTTTGACTGGTGTGCAATCCTAAAAAACACA</left_flank>
        <right_flank>TTCTCAATTTCCAACTATCTATGCACAATGAAACTACCTCCGGCTCATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAACTATACCTAGATCCAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCAAGTTTTTCAGTTATTAGTTGATTTCTGAGAAACACCCATTTTGACCGGTTTTTGTACTGAAAACGTGAAAAACATGTGTCTTTCGGAAATCGGTAAAAATCTGAAAAACTTGAAATTTTCAAAAAATGCTGTGAGTGTTTTACATTCTCTAAAATTTTCAAAATGATCGGAAACTTGGCCGCCGAGCTTCAGACTTTTGAAAATAGTCAAAATGGGCGGACATCAGATGAAAAATCCGTTTCTGTATATCTCTTTGGCCGGTACTGTAGTTCATGAAGAACACGTGCACTTTAGACAAACCCAAAACTGTAGTTGCTGTCCTGATGTTTGAATTACTGAATTTGGAGATCAACTAACCTCTATTGCGTCTTCAACTGGGTCTTTGTCGCTTTTGGGTCTGTCGAAGGGGTCCATTTTGACTGGTGTGCAATCCTAAAAAACACATTTCTCAATTTCCAACTATCTATGCACAATGAAACTACCTCCGGCTCATTTTCAGTGCTGAAAAACACATCAGGTGGTGCTGTTGGCACCTTACCCGTGTCTACTCCATTTGCATTCATTGGGACTGCTGCGGCTGTTGTCGCCATCCCGTCGCTCATCGATTTCTGCAATTGTTGAACCATAAACAGGGTGGGGGAAAAATAAGAAAAAGAAGAACAAGTGGTTGAAAAACGAAAGAATCATGGAGCATCCTCCGATATCAACAAGGGAAAAAAGACGAAAAAACAGGGAGGAGGGCAGAGGGAGAGAGATTGTGTAATATAGGAAAAAGAGCATTTCTTGTTCTTTGCATCGGCTCTTCTTTAAAAGTGATGTGTTTTTCAAAGAAGATTCTTTGCAAGGAAGGGAAGCAAGAAAAATAGAAAAATGATAAGGAATAAATGAAACAATTTTTTCTTTTTTTTTTCTTTTTTTGTTTCGATATCTAAGGTCTTTATTAAA</canonical>
            <polymorphic>CAAAACTATACCTAGATCCAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCAAGTTTTTCAGTTATTAGTTGATTTCTGAGAAACACCCATTTTGACCGGTTTTTGTACTGAAAACGTGAAAAACATGTGTCTTTCGGAAATCGGTAAAAATCTGAAAAACTTGAAATTTTCAAAAAATGCTGTGAGTGTTTTACATTCTCTAAAATTTTCAAAATGATCGGAAACTTGGCCGCCGAGCTTCAGACTTTTGAAAATAGTCAAAATGGGCGGACATCAGATGAAAAATCCGTTTCTGTATATCTCTTTGGCCGGTACTGTAGTTCATGAAGAACACGTGCACTTTAGACAAACCCAAAACTGTAGTTGCTGTCCTGATGTTTGAATTACTGAATTTGGAGATCAACTAACCTCTATTGCGTCTTCAACTGGGTCTTTGTCGCTTTTGGGTCTGTCGAAGGGGTCCATTTTGACTGGTGTGCAATCCTAAAAAACACAYTTCTCAATTTCCAACTATCTATGCACAATGAAACTACCTCCGGCTCATTTTCAGTGCTGAAAAACACATCAGGTGGTGCTGTTGGCACCTTACCCGTGTCTACTCCATTTGCATTCATTGGGACTGCTGCGGCTGTTGTCGCCATCCCGTCGCTCATCGATTTCTGCAATTGTTGAACCATAAACAGGGTGGGGGAAAAATAAGAAAAAGAAGAACAAGTGGTTGAAAAACGAAAGAATCATGGAGCATCCTCCGATATCAACAAGGGAAAAAAGACGAAAAAACAGGGAGGAGGGCAGAGGGAGAGAGATTGTGTAATATAGGAAAAAGAGCATTTCTTGTTCTTTGCATCGGCTCTTCTTTAAAAGTGATGTGTTTTTCAAAGAAGATTCTTTGCAAGGAAGGGAAGCAAGAAAAATAGAAAAATGATAAGGAATAAATGAAACAATTTTTTCTTTTTTTTTTCTTTTTTTGTTTCGATATCTAAGGTCTTTATTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTGATGTTTGAATTACTGAAT</pcr_primer_p1>
		<pcr_primer_p2>AATGAATGCAAATGGAGTAGAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCCTGATGTTTGAATTACTGAATTTGGAGATCAACTAACCTCTATTGCGTCTTCAACTGGGTCTTTGTCGCTTTTGGGTCTGTCGAAGGGGTCCATTTTGACTGGTGTGCAATCCTAAAAAACACATTTCTCAATTTCCAACTATCTATGCACAATGAAACTACCTCCGGCTCATTTTCAGTGCTGAAAAACACATCAGGTGGTGCTGTTGGCACCTTACCCGTGTCTACTCCATTTGCATTCATT</canonical_amplicon>
		<polymorphic_amplicon>TCCTGATGTTTGAATTACTGAATTTGGAGATCAACTAACCTCTATTGCGTCTTCAACTGGGTCTTTGTCGCTTTTGGGTCTGTCGAAGGGGTCCATTTTGACTGGTGTGCAATCCTAAAAAACACAYTTCTCAATTTCCAACTATCTATGCACAATGAAACTACCTCCGGCTCATTTTCAGTGCTGAAAAACACATCAGGTGGTGCTGTTGGCACCTTACCCGTGTCTACTCCATTTGCATTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20121</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>35075</contig_pos>
        <strand>+</strand>
        <context>AGGGTGGGGG[A/G]AAAATAAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCGTCGCTCATCGATTTCTGCAATTGTTGAACCATAAACAGGGTGGGGG</left_flank>
        <right_flank>AAAATAAGAAAAAGAAGAACAAGTGGTTGAAAAACGAAAGAATCATGGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATTCTCTAAAATTTTCAAAATGATCGGAAACTTGGCCGCCGAGCTTCAGACTTTTGAAAATAGTCAAAATGGGCGGACATCAGATGAAAAATCCGTTTCTGTATATCTCTTTGGCCGGTACTGTAGTTCATGAAGAACACGTGCACTTTAGACAAACCCAAAACTGTAGTTGCTGTCCTGATGTTTGAATTACTGAATTTGGAGATCAACTAACCTCTATTGCGTCTTCAACTGGGTCTTTGTCGCTTTTGGGTCTGTCGAAGGGGTCCATTTTGACTGGTGTGCAATCCTAAAAAACACATTTCTCAATTTCCAACTATCTATGCACAATGAAACTACCTCCGGCTCATTTTCAGTGCTGAAAAACACATCAGGTGGTGCTGTTGGCACCTTACCCGTGTCTACTCCATTTGCATTCATTGGGACTGCTGCGGCTGTTGTCGCCATCCCGTCGCTCATCGATTTCTGCAATTGTTGAACCATAAACAGGGTGGGGGAAAAATAAGAAAAAGAAGAACAAGTGGTTGAAAAACGAAAGAATCATGGAGCATCCTCCGATATCAACAAGGGAAAAAAGACGAAAAAACAGGGAGGAGGGCAGAGGGAGAGAGATTGTGTAATATAGGAAAAAGAGCATTTCTTGTTCTTTGCATCGGCTCTTCTTTAAAAGTGATGTGTTTTTCAAAGAAGATTCTTTGCAAGGAAGGGAAGCAAGAAAAATAGAAAAATGATAAGGAATAAATGAAACAATTTTTTCTTTTTTTTTTCTTTTTTTGTTTCGATATCTAAGGTCTTTATTAAAAAATTCTTCACAAACAAAGTAATAAACTTGTGATAAACATCTTCTTTTGCGATAAGAGACCGCGAAAAAATGAAGAAAAAACGAAGAAAAAAGAAGGGAAACCGGTTCAACGCGAAGAACTTTCGAGAACCGCTCTGCAGTTTAATGGGCCGGCGAGCAAGCTCGCCCCACCGCACCACTGACTTCCCCGAGCACC</canonical>
            <polymorphic>ACATTCTCTAAAATTTTCAAAATGATCGGAAACTTGGCCGCCGAGCTTCAGACTTTTGAAAATAGTCAAAATGGGCGGACATCAGATGAAAAATCCGTTTCTGTATATCTCTTTGGCCGGTACTGTAGTTCATGAAGAACACGTGCACTTTAGACAAACCCAAAACTGTAGTTGCTGTCCTGATGTTTGAATTACTGAATTTGGAGATCAACTAACCTCTATTGCGTCTTCAACTGGGTCTTTGTCGCTTTTGGGTCTGTCGAAGGGGTCCATTTTGACTGGTGTGCAATCCTAAAAAACACATTTCTCAATTTCCAACTATCTATGCACAATGAAACTACCTCCGGCTCATTTTCAGTGCTGAAAAACACATCAGGTGGTGCTGTTGGCACCTTACCCGTGTCTACTCCATTTGCATTCATTGGGACTGCTGCGGCTGTTGTCGCCATCCCGTCGCTCATCGATTTCTGCAATTGTTGAACCATAAACAGGGTGGGGGRAAAATAAGAAAAAGAAGAACAAGTGGTTGAAAAACGAAAGAATCATGGAGCATCCTCCGATATCAACAAGGGAAAAAAGACGAAAAAACAGGGAGGAGGGCAGAGGGAGAGAGATTGTGTAATATAGGAAAAAGAGCATTTCTTGTTCTTTGCATCGGCTCTTCTTTAAAAGTGATGTGTTTTTCAAAGAAGATTCTTTGCAAGGAAGGGAAGCAAGAAAAATAGAAAAATGATAAGGAATAAATGAAACAATTTTTTCTTTTTTTTTTCTTTTTTTGTTTCGATATCTAAGGTCTTTATTAAAAAATTCTTCACAAACAAAGTAATAAACTTGTGATAAACATCTTCTTTTGCGATAAGAGACCGCGAAAAAATGAAGAAAAAACGAAGAAAAAAGAAGGGAAACCGGTTCAACGCGAAGAACTTTCGAGAACCGCTCTGCAGTTTAATGGGCCGGCGAGCAAGCTCGCCCCACCGCACCACTGACTTCCCCGAGCACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTACTCCATTTGCATTCATT</pcr_primer_p1>
		<pcr_primer_p2>ACAAGAAATGCTCTTTTTCCTAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GTCTACTCCATTTGCATTCATTGGGACTGCTGCGGCTGTTGTCGCCATCCCGTCGCTCATCGATTTCTGCAATTGTTGAACCATAAACAGGGTGGGGGAAAAATAAGAAAAAGAAGAACAAGTGGTTGAAAAACGAAAGAATCATGGAGCATCCTCCGATATCAACAAGGGAAAAAAGACGAAAAAACAGGGAGGAGGGCAGAGGGAGAGAGATTGTGTAATATAGGAAAAAGAGCATTTCTTGT</canonical_amplicon>
		<polymorphic_amplicon>GTCTACTCCATTTGCATTCATTGGGACTGCTGCGGCTGTTGTCGCCATCCCGTCGCTCATCGATTTCTGCAATTGTTGAACCATAAACAGGGTGGGGGRAAAATAAGAAAAAGAAGAACAAGTGGTTGAAAAACGAAAGAATCATGGAGCATCCTCCGATATCAACAAGGGAAAAAAGACGAAAAAACAGGGAGGAGGGCAGAGGGAGAGAGATTGTGTAATATAGGAAAAAGAGCATTTCTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20122</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>36764</contig_pos>
        <strand></strand>
        <context>ATTATGGATG[T/A]WGGTATGGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTGAGTTCATCTGAACTGGAGTGGTTCTCAATCATCAAAGATTATGGATG</left_flank>
        <right_flank>TGGTATGGAACGGCGGTAAGAATGGAACATGTTGTCATGAGGGGTCTCGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAATTGTTTTCAGTGGGAACATATGGTGGAGGATATCCTCCATTCCTCATCTTTTGAATTTTCTAATGGGGTTATTCAGTGTGAAGAATTTCAGCAAAATTGCTGGTTTTTCCTTATGCAGAGGGCAGAAAAATCAGCAATTTTTCTGAATTGCTGATTCTCTAAATAACCCCATAAAGAGCGATAGTGCCTGAAAGTTTAAAAATTTTTGCGTCTAAGAAATAAGAAAAGAGAGAAGGAGAAAAGCTAAAAGTGAAAAGTGACGTTTTCCTGTTATTTCCCGTTCAGAAAGTTTCCCGCTGATTTCTGAAGTTTGATCATATAAAGATAATCAGAATCGTTAAGGGACGCACGGACGCAAATAATATTTCTCCAGGTTTTTGTACCTAAATTTTTTTTGTTTTCTTATTATTGCAAATGTAACAAATACGACATCATGCAATCGTTTTGAGTTCATCTGAACTGGAGTGGTTCTCAATCATCAAAGATTATGGATGTTGGTATGGAACGGCGGTAAGAATGGAACATGTTGTCATGAGGGGTCTCGTGCACATCCTGTTTATTTGATAATAAAGATCAAGAACCCATGATGAAAGTCTAAACACAGTTCAAGGGACATGTAGCCTGAAAATTTTTGCAGGTCTTATTTTTAATTGTGTATAGACTGAAAACTCGTCAACTCATATTCAATGAAGTTTTTTCGAAAATTAAAATATTTTGTGTCCATCGGGTCCTTCTATTAAAAAGGCATTATTCCTTAAATTTTGAACAAGAATTCTAGAAAATCTTTTTCTAAACAAATCAGAAAAAATACCGGAGCAATGGAAGAACTCCCTCTAATTGAAGAGCCTCTGAAAAGGCAGGACTCTCAAAGTGTACCTTGAGATGATTGAGGAGCAGAACCTTCTAATGAAGTCTTTACGGTATAACGTGTTTCCCAAATTTTATTGAGTATGTTATCTCTAATTTCGCGGTTCGGTTTCTTGTAAAACTGCTGT</canonical>
            <polymorphic>TGGAATTGTTTTCAGTGGGAACATATGGTGGAGGATATCCTCCATTCCTCATCTTTTGAATTTTCTAATGGGGTTATTCAGTGTGAAGAATTTCAGCAAAATTGCTGGTTTTTCCTTATGCAGAGGGCAGAAAAATCAGCAATTTTTCTGAATTGCTGATTCTCTAAATAACCCCATAAAGAGCGATAGTGCCTGAAAGTTTAAAAATTTTTGCGTCTAAGAAATAAGAAAAGAGAGAAGGAGAAAAGCTAAAAGTGAAAAGTGACGTTTTCCTGTTATTTCCCGTTCAGAAAGTTTCCCGCTGATTTCTGAAGTTTGATCATATAAAGATAATCAGAATCGTTAAGGGACGCACGGACGCAAATAATATTTCTCCAGGTTTTTGTACCTAAATTTTTTTTGTTTTCTTATTATTGCAAATGTAACAAATACGACATCATGCAATCGTTTTGAGTTCATCTGAACTGGAGTGGTTCTCAATCATCAAAGATTATGGATGWTGGTATGGAACGGCGGTAAGAATGGAACATGTTGTCATGAGGGGTCTCGTGCACATCCTGTTTATTTGATAATAAAGATCAAGAACCCATGATGAAAGTCTAAACACAGTTCAAGGGACATGTAGCCTGAAAATTTTTGCAGGTCTTATTTTTAATTGTGTATAGACTGAAAACTCGTCAACTCATATTCAATGAAGTTTTTTCGAAAATTAAAATATTTTGTGTCCATCGGGTCCTTCTATTAAAAAGGCATTATTCCTTAAATTTTGAACAAGAATTCTAGAAAATCTTTTTCTAAACAAATCAGAAAAAATACCGGAGCAATGGAAGAACTCCCTCTAATTGAAGAGCCTCTGAAAAGGCAGGACTCTCAAAGTGTACCTTGAGATGATTGAGGAGCAGAACCTTCTAATGAAGTCTTTACGGTATAACGTGTTTCCCAAATTTTATTGAGTATGTTATCTCTAATTTCGCGGTTCGGTTTCTTGTAAAACTGCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTTCTCCAGGTTTTTGTACC</pcr_primer_p1>
		<pcr_primer_p2>CCTTGAACTGTGTTTAGACTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATTTCTCCAGGTTTTTGTACCTAAATTTTTTTTGTTTTCTTATTATTGCAAATGTAACAAATACGACATCATGCAATCGTTTTGAGTTCATCTGAACTGGAGTGGTTCTCAATCATCAAAGATTATGGATGTTGGTATGGAACGGCGGTAAGAATGGAACATGTTGTCATGAGGGGTCTCGTGCACATCCTGTTTATTTGATAATAAAGATCAAGAACCCATGATGAAAGTCTAAACACAGTTCAAGG</canonical_amplicon>
		<polymorphic_amplicon>ATATTTCTCCAGGTTTTTGTACCTAAATTTTTTTTGTTTTCTTATTATTGCAAATGTAACAAATACGACATCATGCAATCGTTTTGAGTTCATCTGAACTGGAGTGGTTCTCAATCATCAAAGATTATGGATGWTGGTATGGAACGGCGGTAAGAATGGAACATGTTGTCATGAGGGGTCTCGTGCACATCCTGTTTATTTGATAATAAAGATCAAGAACCCATGATGAAAGTCTAAACACAGTTCAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20123</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>36675</contig_pos>
        <strand></strand>
        <context>TGTTTTCTTA[T/G]TATTGCAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CAAATAATATTTCTCCAGGTTTTTGTACCTAAATTTTTTTTGTTTTCTTA</left_flank>
        <right_flank>TATTGCAAATGTAACAAATACGACATCATGCAATCGTTTTGAGTTCATCT</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCGTTCAAAGAACAAATGCACAAAACAAAGGAGGTGATTGGTGCCTGCCGCTGGTTTTTCACGTGAACTTTTGGCGAAGCGACACAGCTGGAATTGTTTTCAGTGGGAACATATGGTGGAGGATATCCTCCATTCCTCATCTTTTGAATTTTCTAATGGGGTTATTCAGTGTGAAGAATTTCAGCAAAATTGCTGGTTTTTCCTTATGCAGAGGGCAGAAAAATCAGCAATTTTTCTGAATTGCTGATTCTCTAAATAACCCCATAAAGAGCGATAGTGCCTGAAAGTTTAAAAATTTTTGCGTCTAAGAAATAAGAAAAGAGAGAAGGAGAAAAGCTAAAAGTGAAAAGTGACGTTTTCCTGTTATTTCCCGTTCAGAAAGTTTCCCGCTGATTTCTGAAGTTTGATCATATAAAGATAATCAGAATCGTTAAGGGACGCACGGACGCAAATAATATTTCTCCAGGTTTTTGTACCTAAATTTTTTTTGTTTTCTTATTATTGCAAATGTAACAAATACGACATCATGCAATCGTTTTGAGTTCATCTGAACTGGAGTGGTTCTCAATCATCAAAGATTATGGATGTTGGTATGGAACGGCGGTAAGAATGGAACATGTTGTCATGAGGGGTCTCGTGCACATCCTGTTTATTTGATAATAAAGATCAAGAACCCATGATGAAAGTCTAAACACAGTTCAAGGGACATGTAGCCTGAAAATTTTTGCAGGTCTTATTTTTAATTGTGTATAGACTGAAAACTCGTCAACTCATATTCAATGAAGTTTTTTCGAAAATTAAAATATTTTGTGTCCATCGGGTCCTTCTATTAAAAAGGCATTATTCCTTAAATTTTGAACAAGAATTCTAGAAAATCTTTTTCTAAACAAATCAGAAAAAATACCGGAGCAATGGAAGAACTCCCTCTAATTGAAGAGCCTCTGAAAAGGCAGGACTCTCAAAGTGTACCTTGAGATGATTGAGGAGCAGAACCTTCTA</canonical>
            <polymorphic>AGCGTTCAAAGAACAAATGCACAAAACAAAGGAGGTGATTGGTGCCTGCCGCTGGTTTTTCACGTGAACTTTTGGCGAAGCGACACAGCTGGAATTGTTTTCAGTGGGAACATATGGTGGAGGATATCCTCCATTCCTCATCTTTTGAATTTTCTAATGGGGTTATTCAGTGTGAAGAATTTCAGCAAAATTGCTGGTTTTTCCTTATGCAGAGGGCAGAAAAATCAGCAATTTTTCTGAATTGCTGATTCTCTAAATAACCCCATAAAGAGCGATAGTGCCTGAAAGTTTAAAAATTTTTGCGTCTAAGAAATAAGAAAAGAGAGAAGGAGAAAAGCTAAAAGTGAAAAGTGACGTTTTCCTGTTATTTCCCGTTCAGAAAGTTTCCCGCTGATTTCTGAAGTTTGATCATATAAAGATAATCAGAATCGTTAAGGGACGCACGGACGCAAATAATATTTCTCCAGGTTTTTGTACCTAAATTTTTTTTGTTTTCTTAKTATTGCAAATGTAACAAATACGACATCATGCAATCGTTTTGAGTTCATCTGAACTGGAGTGGTTCTCAATCATCAAAGATTATGGATGTTGGTATGGAACGGCGGTAAGAATGGAACATGTTGTCATGAGGGGTCTCGTGCACATCCTGTTTATTTGATAATAAAGATCAAGAACCCATGATGAAAGTCTAAACACAGTTCAAGGGACATGTAGCCTGAAAATTTTTGCAGGTCTTATTTTTAATTGTGTATAGACTGAAAACTCGTCAACTCATATTCAATGAAGTTTTTTCGAAAATTAAAATATTTTGTGTCCATCGGGTCCTTCTATTAAAAAGGCATTATTCCTTAAATTTTGAACAAGAATTCTAGAAAATCTTTTTCTAAACAAATCAGAAAAAATACCGGAGCAATGGAAGAACTCCCTCTAATTGAAGAGCCTCTGAAAAGGCAGGACTCTCAAAGTGTACCTTGAGATGATTGAGGAGCAGAACCTTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAGCTAAAAGTGAAAAGTGA</pcr_primer_p1>
		<pcr_primer_p2>ATCTTTGATGATTGAGAACCAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAAAGCTAAAAGTGAAAAGTGACGTTTTCCTGTTATTTCCCGTTCAGAAAGTTTCCCGCTGATTTCTGAAGTTTGATCATATAAAGATAATCAGAATCGTTAAGGGACGCACGGACGCAAATAATATTTCTCCAGGTTTTTGTACCTAAATTTTTTTTGTTTTCTTATTATTGCAAATGTAACAAATACGACATCATGCAATCGTTTTGAGTTCATCTGAACTGGAGTGGTTCTCAATCATCAAAGAT</canonical_amplicon>
		<polymorphic_amplicon>GAAAAGCTAAAAGTGAAAAGTGACGTTTTCCTGTTATTTCCCGTTCAGAAAGTTTCCCGCTGATTTCTGAAGTTTGATCATATAAAGATAATCAGAATCGTTAAGGGACGCACGGACGCAAATAATATTTCTCCAGGTTTTTGTACCTAAATTTTTTTTGTTTTCTTAKTATTGCAAATGTAACAAATACGACATCATGCAATCGTTTTGAGTTCATCTGAACTGGAGTGGTTCTCAATCATCAAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20128</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>129841</contig_pos>
        <strand></strand>
        <context>TCTTCATTTT[T/C]CCCAGACRTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTTGGAAGTAGTGATTTAAAATCGGAAAAAAAATATTTTTCTTCATTTT</left_flank>
        <right_flank>CCCAGACATGATCTGACGATTTGTGGAAACTTGTTTCATACGACTTTCAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCTAGCAGCAACCCACCTAACTCGTCATATGTGAGTTCGATTATCTCGATTTTTTGTAAAAGATATCGGAAACCGGTCAACTGATAAAATATTGGTGATATTATAAAAAATAATTCATTAGTTGACAACTTTCCTATATATTTCACAGAAACCGAGATAAATTGGCTCAAAGTTAAAAGTTGGGGGCCCTTCTATTACAGATTTCACGATATTGGGTTACTGTAGAAAATGTGAGATTTAGATTAGTAGAGTAGATATTTGTTTTTTATCACAAAAAACCGAAATGTTTTTTCTAAATTGGCTTAAATAAGAATTTCAAGTTCCTTATTCTATTCAACAAAATTTCCCATTACTATGAACATACAATTTTTTGGCAGATAACATGTTTTGGATTATTTTAATTTACATAGCCTTCAATCACGGTTTGACAATACTTAGTGACTAAAATTTGGAAGTAGTGATTTAAAATCGGAAAAAAAATATTTTTCTTCATTTTTCCCAGACATGATCTGACGATTTGTGGAAACTTGTTTCATACGACTTTCAGGATCAAATTGCTCTTTCATACCGGATGTCTACACCTTTGTAAAGTGTCATCCGATTAGTTTTTCGACTTCTCCTATGCTACGTGACACAACTAAATTATAGTTCGGTTCATAAATTTCTTCCTCTCTCAATTTCTGTCCCATCGGGGGAGTGTTTGACAGGATCTAATCGAGTGGGAGTCGTCGATGGCGTCAAGTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATCTTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATCTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAGTAAAGGGATGTTTAATATGAGTTCAATTATTTGTTTTCCCTTTATTTTTTGCTTTTCAAGGAAGTACAAAGCTTAGTTAGTCGTAGGTGTTTAGAAGGGAAATCGTGAGAGAACTGGAATAAGAATAAAAAAA</canonical>
            <polymorphic>TTTTCTAGCAGCAACCCACCTAACTCGTCATATGTGAGTTCGATTATCTCGATTTTTTGTAAAAGATATCGGAAACCGGTCAACTGATAAAATATTGGTGATATTATAAAAAATAATTCATTAGTTGACAACTTTCCTATATATTTCACAGAAACCGAGATAAATTGGCTCAAAGTTAAAAGTTGGGGGCCCTTCTATTACAGATTTCACGATATTGGGTTACTGTAGAAAATGTGAGATTTAGATTAGTAGAGTAGATATTTGTTTTTTATCACAAAAAACCGAAATGTTTTTTCTAAATTGGCTTAAATAAGAATTTCAAGTTCCTTATTCTATTCAACAAAATTTCCCATTACTATGAACATACAATTTTTTGGCAGATAACATGTTTTGGATTATTTTAATTTACATAGCCTTCAATCACGGTTTGACAATACTTAGTGACTAAAATTTGGAAGTAGTGATTTAAAATCGGAAAAAAAATATTTTTCTTCATTTTYCCCAGACATGATCTGACGATTTGTGGAAACTTGTTTCATACGACTTTCAGGATCAAATTGCTCTTTCATACCGGATGTCTACACCTTTGTAAAGTGTCATCCGATTAGTTTTTCGACTTCTCCTATGCTACGTGACACAACTAAATTATAGTTCGGTTCATAAATTTCTTCCTCTCTCAATTTCTGTCCCATCGGGGGAGTGTTTGACAGGATCTAATCGAGTGGGAGTCGTCGATGGCGTCAAGTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATCTTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATCTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAGTAAAGGGATGTTTAATATGAGTTCAATTATTTGTTTTCCCTTTATTTTTTGCTTTTCAAGGAAGTACAAAGCTTAGTTAGTCGTAGGTGTTTAGAAGGGAAATCGTGAGAGAACTGGAATAAGAATAAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGATAACATGTTTTGGATTAT</pcr_primer_p1>
		<pcr_primer_p2>CATAGGAGAAGTCGAAAAACTAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCAGATAACATGTTTTGGATTATTTTAATTTACATAGCCTTCAATCACGGTTTGACAATACTTAGTGACTAAAATTTGGAAGTAGTGATTTAAAATCGGAAAAAAAATATTTTTCTTCATTTTTCCCAGACATGATCTGACGATTTGTGGAAACTTGTTTCATACGACTTTCAGGATCAAATTGCTCTTTCATACCGGATGTCTACACCTTTGTAAAGTGTCATCCGATTAGTTTTTCGACTTCTCCTATG</canonical_amplicon>
		<polymorphic_amplicon>GCAGATAACATGTTTTGGATTATTTTAATTTACATAGCCTTCAATCACGGTTTGACAATACTTAGTGACTAAAATTTGGAAGTAGTGATTTAAAATCGGAAAAAAAATATTTTTCTTCATTTTYCCCAGACATGATCTGACGATTTGTGGAAACTTGTTTCATACGACTTTCAGGATCAAATTGCTCTTTCATACCGGATGTCTACACCTTTGTAAAGTGTCATCCGATTAGTTTTTCGACTTCTCCTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20129</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>129849</contig_pos>
        <strand></strand>
        <context>TTYCCCAGAC[A/G]TGATCTGACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAGTGATTTAAAATCGGAAAAAAAATATTTTTCTTCATTTTTCCCAGAC</left_flank>
        <right_flank>TGATCTGACGATTTGTGGAAACTTGTTTCATACGACTTTCAGGATCAAAT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGCAACCCACCTAACTCGTCATATGTGAGTTCGATTATCTCGATTTTTTGTAAAAGATATCGGAAACCGGTCAACTGATAAAATATTGGTGATATTATAAAAAATAATTCATTAGTTGACAACTTTCCTATATATTTCACAGAAACCGAGATAAATTGGCTCAAAGTTAAAAGTTGGGGGCCCTTCTATTACAGATTTCACGATATTGGGTTACTGTAGAAAATGTGAGATTTAGATTAGTAGAGTAGATATTTGTTTTTTATCACAAAAAACCGAAATGTTTTTTCTAAATTGGCTTAAATAAGAATTTCAAGTTCCTTATTCTATTCAACAAAATTTCCCATTACTATGAACATACAATTTTTTGGCAGATAACATGTTTTGGATTATTTTAATTTACATAGCCTTCAATCACGGTTTGACAATACTTAGTGACTAAAATTTGGAAGTAGTGATTTAAAATCGGAAAAAAAATATTTTTCTTCATTTTTCCCAGACATGATCTGACGATTTGTGGAAACTTGTTTCATACGACTTTCAGGATCAAATTGCTCTTTCATACCGGATGTCTACACCTTTGTAAAGTGTCATCCGATTAGTTTTTCGACTTCTCCTATGCTACGTGACACAACTAAATTATAGTTCGGTTCATAAATTTCTTCCTCTCTCAATTTCTGTCCCATCGGGGGAGTGTTTGACAGGATCTAATCGAGTGGGAGTCGTCGATGGCGTCAAGTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATCTTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATCTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAGTAAAGGGATGTTTAATATGAGTTCAATTATTTGTTTTCCCTTTATTTTTTGCTTTTCAAGGAAGTACAAAGCTTAGTTAGTCGTAGGTGTTTAGAAGGGAAATCGTGAGAGAACTGGAATAAGAATAAAAAAATCTATGAG</canonical>
            <polymorphic>CAGCAACCCACCTAACTCGTCATATGTGAGTTCGATTATCTCGATTTTTTGTAAAAGATATCGGAAACCGGTCAACTGATAAAATATTGGTGATATTATAAAAAATAATTCATTAGTTGACAACTTTCCTATATATTTCACAGAAACCGAGATAAATTGGCTCAAAGTTAAAAGTTGGGGGCCCTTCTATTACAGATTTCACGATATTGGGTTACTGTAGAAAATGTGAGATTTAGATTAGTAGAGTAGATATTTGTTTTTTATCACAAAAAACCGAAATGTTTTTTCTAAATTGGCTTAAATAAGAATTTCAAGTTCCTTATTCTATTCAACAAAATTTCCCATTACTATGAACATACAATTTTTTGGCAGATAACATGTTTTGGATTATTTTAATTTACATAGCCTTCAATCACGGTTTGACAATACTTAGTGACTAAAATTTGGAAGTAGTGATTTAAAATCGGAAAAAAAATATTTTTCTTCATTTTTCCCAGACRTGATCTGACGATTTGTGGAAACTTGTTTCATACGACTTTCAGGATCAAATTGCTCTTTCATACCGGATGTCTACACCTTTGTAAAGTGTCATCCGATTAGTTTTTCGACTTCTCCTATGCTACGTGACACAACTAAATTATAGTTCGGTTCATAAATTTCTTCCTCTCTCAATTTCTGTCCCATCGGGGGAGTGTTTGACAGGATCTAATCGAGTGGGAGTCGTCGATGGCGTCAAGTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATCTTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATCTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAGTAAAGGGATGTTTAATATGAGTTCAATTATTTGTTTTCCCTTTATTTTTTGCTTTTCAAGGAAGTACAAAGCTTAGTTAGTCGTAGGTGTTTAGAAGGGAAATCGTGAGAGAACTGGAATAAGAATAAAAAAATCTATGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 377 122</canonical_bands>
                <polymorphic_bands>623 377</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAGATAACATGTTTTGGATTAT</pcr_primer_p1>
		<pcr_primer_p2>CATAGGAGAAGTCGAAAAACTAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCAGATAACATGTTTTGGATTATTTTAATTTACATAGCCTTCAATCACGGTTTGACAATACTTAGTGACTAAAATTTGGAAGTAGTGATTTAAAATCGGAAAAAAAATATTTTTCTTCATTTTTCCCAGACATGATCTGACGATTTGTGGAAACTTGTTTCATACGACTTTCAGGATCAAATTGCTCTTTCATACCGGATGTCTACACCTTTGTAAAGTGTCATCCGATTAGTTTTTCGACTTCTCCTATG</canonical_amplicon>
		<polymorphic_amplicon>GCAGATAACATGTTTTGGATTATTTTAATTTACATAGCCTTCAATCACGGTTTGACAATACTTAGTGACTAAAATTTGGAAGTAGTGATTTAAAATCGGAAAAAAAATATTTTTCTTCATTTTTCCCAGACRTGATCTGACGATTTGTGGAAACTTGTTTCATACGACTTTCAGGATCAAATTGCTCTTTCATACCGGATGTCTACACCTTTGTAAAGTGTCATCCGATTAGTTTTTCGACTTCTCCTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20130</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>129865</contig_pos>
        <strand></strand>
        <context>TGACGATTTG[T/C]GRAAACTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGAAAAAAAATATTTTTCTTCATTTTTCCCAGACATGATCTGACGATTTG</left_flank>
        <right_flank>GGAAACTTGTTTCATACGACTTTCAGGATCAAATTGCTCTTTCATACCGG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGTCATATGTGAGTTCGATTATCTCGATTTTTTGTAAAAGATATCGGAAACCGGTCAACTGATAAAATATTGGTGATATTATAAAAAATAATTCATTAGTTGACAACTTTCCTATATATTTCACAGAAACCGAGATAAATTGGCTCAAAGTTAAAAGTTGGGGGCCCTTCTATTACAGATTTCACGATATTGGGTTACTGTAGAAAATGTGAGATTTAGATTAGTAGAGTAGATATTTGTTTTTTATCACAAAAAACCGAAATGTTTTTTCTAAATTGGCTTAAATAAGAATTTCAAGTTCCTTATTCTATTCAACAAAATTTCCCATTACTATGAACATACAATTTTTTGGCAGATAACATGTTTTGGATTATTTTAATTTACATAGCCTTCAATCACGGTTTGACAATACTTAGTGACTAAAATTTGGAAGTAGTGATTTAAAATCGGAAAAAAAATATTTTTCTTCATTTTTCCCAGACATGATCTGACGATTTGTGGAAACTTGTTTCATACGACTTTCAGGATCAAATTGCTCTTTCATACCGGATGTCTACACCTTTGTAAAGTGTCATCCGATTAGTTTTTCGACTTCTCCTATGCTACGTGACACAACTAAATTATAGTTCGGTTCATAAATTTCTTCCTCTCTCAATTTCTGTCCCATCGGGGGAGTGTTTGACAGGATCTAATCGAGTGGGAGTCGTCGATGGCGTCAAGTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATCTTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATCTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAGTAAAGGGATGTTTAATATGAGTTCAATTATTTGTTTTCCCTTTATTTTTTGCTTTTCAAGGAAGTACAAAGCTTAGTTAGTCGTAGGTGTTTAGAAGGGAAATCGTGAGAGAACTGGAATAAGAATAAAAAAATCTATGAGATCATACTATCTAGAA</canonical>
            <polymorphic>TCGTCATATGTGAGTTCGATTATCTCGATTTTTTGTAAAAGATATCGGAAACCGGTCAACTGATAAAATATTGGTGATATTATAAAAAATAATTCATTAGTTGACAACTTTCCTATATATTTCACAGAAACCGAGATAAATTGGCTCAAAGTTAAAAGTTGGGGGCCCTTCTATTACAGATTTCACGATATTGGGTTACTGTAGAAAATGTGAGATTTAGATTAGTAGAGTAGATATTTGTTTTTTATCACAAAAAACCGAAATGTTTTTTCTAAATTGGCTTAAATAAGAATTTCAAGTTCCTTATTCTATTCAACAAAATTTCCCATTACTATGAACATACAATTTTTTGGCAGATAACATGTTTTGGATTATTTTAATTTACATAGCCTTCAATCACGGTTTGACAATACTTAGTGACTAAAATTTGGAAGTAGTGATTTAAAATCGGAAAAAAAATATTTTTCTTCATTTTTCCCAGACATGATCTGACGATTTGYGGAAACTTGTTTCATACGACTTTCAGGATCAAATTGCTCTTTCATACCGGATGTCTACACCTTTGTAAAGTGTCATCCGATTAGTTTTTCGACTTCTCCTATGCTACGTGACACAACTAAATTATAGTTCGGTTCATAAATTTCTTCCTCTCTCAATTTCTGTCCCATCGGGGGAGTGTTTGACAGGATCTAATCGAGTGGGAGTCGTCGATGGCGTCAAGTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATCTTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATCTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAGTAAAGGGATGTTTAATATGAGTTCAATTATTTGTTTTCCCTTTATTTTTTGCTTTTCAAGGAAGTACAAAGCTTAGTTAGTCGTAGGTGTTTAGAAGGGAAATCGTGAGAGAACTGGAATAAGAATAAAAAAATCTATGAGATCATACTATCTAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>149 138 94 65 64 62 61 58 50 48 38 38 27 22 20 20 18 13 12 3</canonical_bands>
                <polymorphic_bands>149 138 120 94 65 64 61 50 48 38 38 27 22 20 20 18 13 12 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAGATAACATGTTTTGGATTAT</pcr_primer_p1>
		<pcr_primer_p2>CATAGGAGAAGTCGAAAAACTAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCAGATAACATGTTTTGGATTATTTTAATTTACATAGCCTTCAATCACGGTTTGACAATACTTAGTGACTAAAATTTGGAAGTAGTGATTTAAAATCGGAAAAAAAATATTTTTCTTCATTTTTCCCAGACATGATCTGACGATTTGTGGAAACTTGTTTCATACGACTTTCAGGATCAAATTGCTCTTTCATACCGGATGTCTACACCTTTGTAAAGTGTCATCCGATTAGTTTTTCGACTTCTCCTATG</canonical_amplicon>
		<polymorphic_amplicon>GCAGATAACATGTTTTGGATTATTTTAATTTACATAGCCTTCAATCACGGTTTGACAATACTTAGTGACTAAAATTTGGAAGTAGTGATTTAAAATCGGAAAAAAAATATTTTTCTTCATTTTTCCCAGACATGATCTGACGATTTGYGGAAACTTGTTTCATACGACTTTCAGGATCAAATTGCTCTTTCATACCGGATGTCTACACCTTTGTAAAGTGTCATCCGATTAGTTTTTCGACTTCTCCTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20131</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>129867</contig_pos>
        <strand></strand>
        <context>ACGATTTGYG[G/A]AAACTTGTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAAAAAATATTTTTCTTCATTTTTCCCAGACATGATCTGACGATTTGTG</left_flank>
        <right_flank>AAACTTGTTTCATACGACTTTCAGGATCAAATTGCTCTTTCATACCGGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCATATGTGAGTTCGATTATCTCGATTTTTTGTAAAAGATATCGGAAACCGGTCAACTGATAAAATATTGGTGATATTATAAAAAATAATTCATTAGTTGACAACTTTCCTATATATTTCACAGAAACCGAGATAAATTGGCTCAAAGTTAAAAGTTGGGGGCCCTTCTATTACAGATTTCACGATATTGGGTTACTGTAGAAAATGTGAGATTTAGATTAGTAGAGTAGATATTTGTTTTTTATCACAAAAAACCGAAATGTTTTTTCTAAATTGGCTTAAATAAGAATTTCAAGTTCCTTATTCTATTCAACAAAATTTCCCATTACTATGAACATACAATTTTTTGGCAGATAACATGTTTTGGATTATTTTAATTTACATAGCCTTCAATCACGGTTTGACAATACTTAGTGACTAAAATTTGGAAGTAGTGATTTAAAATCGGAAAAAAAATATTTTTCTTCATTTTTCCCAGACATGATCTGACGATTTGTGGAAACTTGTTTCATACGACTTTCAGGATCAAATTGCTCTTTCATACCGGATGTCTACACCTTTGTAAAGTGTCATCCGATTAGTTTTTCGACTTCTCCTATGCTACGTGACACAACTAAATTATAGTTCGGTTCATAAATTTCTTCCTCTCTCAATTTCTGTCCCATCGGGGGAGTGTTTGACAGGATCTAATCGAGTGGGAGTCGTCGATGGCGTCAAGTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATCTTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATCTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAGTAAAGGGATGTTTAATATGAGTTCAATTATTTGTTTTCCCTTTATTTTTTGCTTTTCAAGGAAGTACAAAGCTTAGTTAGTCGTAGGTGTTTAGAAGGGAAATCGTGAGAGAACTGGAATAAGAATAAAAAAATCTATGAGATCATACTATCTAGAACT</canonical>
            <polymorphic>GTCATATGTGAGTTCGATTATCTCGATTTTTTGTAAAAGATATCGGAAACCGGTCAACTGATAAAATATTGGTGATATTATAAAAAATAATTCATTAGTTGACAACTTTCCTATATATTTCACAGAAACCGAGATAAATTGGCTCAAAGTTAAAAGTTGGGGGCCCTTCTATTACAGATTTCACGATATTGGGTTACTGTAGAAAATGTGAGATTTAGATTAGTAGAGTAGATATTTGTTTTTTATCACAAAAAACCGAAATGTTTTTTCTAAATTGGCTTAAATAAGAATTTCAAGTTCCTTATTCTATTCAACAAAATTTCCCATTACTATGAACATACAATTTTTTGGCAGATAACATGTTTTGGATTATTTTAATTTACATAGCCTTCAATCACGGTTTGACAATACTTAGTGACTAAAATTTGGAAGTAGTGATTTAAAATCGGAAAAAAAATATTTTTCTTCATTTTTCCCAGACATGATCTGACGATTTGTGRAAACTTGTTTCATACGACTTTCAGGATCAAATTGCTCTTTCATACCGGATGTCTACACCTTTGTAAAGTGTCATCCGATTAGTTTTTCGACTTCTCCTATGCTACGTGACACAACTAAATTATAGTTCGGTTCATAAATTTCTTCCTCTCTCAATTTCTGTCCCATCGGGGGAGTGTTTGACAGGATCTAATCGAGTGGGAGTCGTCGATGGCGTCAAGTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATCTTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATCTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAGTAAAGGGATGTTTAATATGAGTTCAATTATTTGTTTTCCCTTTATTTTTTGCTTTTCAAGGAAGTACAAAGCTTAGTTAGTCGTAGGTGTTTAGAAGGGAAATCGTGAGAGAACTGGAATAAGAATAAAAAAATCTATGAGATCATACTATCTAGAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGATAACATGTTTTGGATTAT</pcr_primer_p1>
		<pcr_primer_p2>CATAGGAGAAGTCGAAAAACTAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCAGATAACATGTTTTGGATTATTTTAATTTACATAGCCTTCAATCACGGTTTGACAATACTTAGTGACTAAAATTTGGAAGTAGTGATTTAAAATCGGAAAAAAAATATTTTTCTTCATTTTTCCCAGACATGATCTGACGATTTGTGGAAACTTGTTTCATACGACTTTCAGGATCAAATTGCTCTTTCATACCGGATGTCTACACCTTTGTAAAGTGTCATCCGATTAGTTTTTCGACTTCTCCTATG</canonical_amplicon>
		<polymorphic_amplicon>GCAGATAACATGTTTTGGATTATTTTAATTTACATAGCCTTCAATCACGGTTTGACAATACTTAGTGACTAAAATTTGGAAGTAGTGATTTAAAATCGGAAAAAAAATATTTTTCTTCATTTTTCCCAGACATGATCTGACGATTTGTGRAAACTTGTTTCATACGACTTTCAGGATCAAATTGCTCTTTCATACCGGATGTCTACACCTTTGTAAAGTGTCATCCGATTAGTTTTTCGACTTCTCCTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20132</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>130061</contig_pos>
        <strand></strand>
        <context>GGATCTAATC[G/A]AGTGGGAGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCCTCTCTCAATTTCTGTCCCATCGGGGGAGTGTTTGACAGGATCTAATC</left_flank>
        <right_flank>AGTGGGAGTCGTCGATGGCGTCAAGTAGCTCGACGCTTTATTTTTAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTGTAGAAAATGTGAGATTTAGATTAGTAGAGTAGATATTTGTTTTTTATCACAAAAAACCGAAATGTTTTTTCTAAATTGGCTTAAATAAGAATTTCAAGTTCCTTATTCTATTCAACAAAATTTCCCATTACTATGAACATACAATTTTTTGGCAGATAACATGTTTTGGATTATTTTAATTTACATAGCCTTCAATCACGGTTTGACAATACTTAGTGACTAAAATTTGGAAGTAGTGATTTAAAATCGGAAAAAAAATATTTTTCTTCATTTTTCCCAGACATGATCTGACGATTTGTGGAAACTTGTTTCATACGACTTTCAGGATCAAATTGCTCTTTCATACCGGATGTCTACACCTTTGTAAAGTGTCATCCGATTAGTTTTTCGACTTCTCCTATGCTACGTGACACAACTAAATTATAGTTCGGTTCATAAATTTCTTCCTCTCTCAATTTCTGTCCCATCGGGGGAGTGTTTGACAGGATCTAATCGAGTGGGAGTCGTCGATGGCGTCAAGTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATCTTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATCTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAGTAAAGGGATGTTTAATATGAGTTCAATTATTTGTTTTCCCTTTATTTTTTGCTTTTCAAGGAAGTACAAAGCTTAGTTAGTCGTAGGTGTTTAGAAGGGAAATCGTGAGAGAACTGGAATAAGAATAAAAAAATCTATGAGATCATACTATCTAGAACTCGGCAAACACACAAGAAACGTGAGATTCTCTCGGGGGGAAAAAAGCCTGGAGCAGTTACCGGAAAAAGTTCATAAATTCGGATGAAAACTCAAATTCCCAAAAAAACTCTAAAGACATACATCACTGAGAAATTTTGAAGAGTGTGTTTACCCAATTTCGGCGCCAGGAAGAAAGCCGGAAACGAGAAAATTCA</canonical>
            <polymorphic>TACTGTAGAAAATGTGAGATTTAGATTAGTAGAGTAGATATTTGTTTTTTATCACAAAAAACCGAAATGTTTTTTCTAAATTGGCTTAAATAAGAATTTCAAGTTCCTTATTCTATTCAACAAAATTTCCCATTACTATGAACATACAATTTTTTGGCAGATAACATGTTTTGGATTATTTTAATTTACATAGCCTTCAATCACGGTTTGACAATACTTAGTGACTAAAATTTGGAAGTAGTGATTTAAAATCGGAAAAAAAATATTTTTCTTCATTTTTCCCAGACATGATCTGACGATTTGTGGAAACTTGTTTCATACGACTTTCAGGATCAAATTGCTCTTTCATACCGGATGTCTACACCTTTGTAAAGTGTCATCCGATTAGTTTTTCGACTTCTCCTATGCTACGTGACACAACTAAATTATAGTTCGGTTCATAAATTTCTTCCTCTCTCAATTTCTGTCCCATCGGGGGAGTGTTTGACAGGATCTAATCRAGTGGGAGTCGTCGATGGCGTCAAGTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATCTTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATCTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAGTAAAGGGATGTTTAATATGAGTTCAATTATTTGTTTTCCCTTTATTTTTTGCTTTTCAAGGAAGTACAAAGCTTAGTTAGTCGTAGGTGTTTAGAAGGGAAATCGTGAGAGAACTGGAATAAGAATAAAAAAATCTATGAGATCATACTATCTAGAACTCGGCAAACACACAAGAAACGTGAGATTCTCTCGGGGGGAAAAAAGCCTGGAGCAGTTACCGGAAAAAGTTCATAAATTCGGATGAAAACTCAAATTCCCAAAAAAACTCTAAAGACATACATCACTGAGAAATTTTGAAGAGTGTGTTTACCCAATTTCGGCGCCAGGAAGAAAGCCGGAAACGAGAAAATTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>434 394 105 35 18 14</canonical_bands>
                <polymorphic_bands>434 394 119 35 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATGCTACGTGACACAACTAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTCTTCCCATAATTCCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTATGCTACGTGACACAACTAAATTATAGTTCGGTTCATAAATTTCTTCCTCTCTCAATTTCTGTCCCATCGGGGGAGTGTTTGACAGGATCTAATCGAGTGGGAGTCGTCGATGGCGTCAAGTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATCTTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATCTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAG</canonical_amplicon>
		<polymorphic_amplicon>CTATGCTACGTGACACAACTAAATTATAGTTCGGTTCATAAATTTCTTCCTCTCTCAATTTCTGTCCCATCGGGGGAGTGTTTGACAGGATCTAATCRAGTGGGAGTCGTCGATGGCGTCAAGTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATCTTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATCTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20133</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>130079</contig_pos>
        <strand></strand>
        <context>GTCGTCGATG[G/A]CGTCAAGTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CCCATCGGGGGAGTGTTTGACAGGATCTAATCGAGTGGGAGTCGTCGATG</left_flank>
        <right_flank>CGTCAAGTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTAGATTAGTAGAGTAGATATTTGTTTTTTATCACAAAAAACCGAAATGTTTTTTCTAAATTGGCTTAAATAAGAATTTCAAGTTCCTTATTCTATTCAACAAAATTTCCCATTACTATGAACATACAATTTTTTGGCAGATAACATGTTTTGGATTATTTTAATTTACATAGCCTTCAATCACGGTTTGACAATACTTAGTGACTAAAATTTGGAAGTAGTGATTTAAAATCGGAAAAAAAATATTTTTCTTCATTTTTCCCAGACATGATCTGACGATTTGTGGAAACTTGTTTCATACGACTTTCAGGATCAAATTGCTCTTTCATACCGGATGTCTACACCTTTGTAAAGTGTCATCCGATTAGTTTTTCGACTTCTCCTATGCTACGTGACACAACTAAATTATAGTTCGGTTCATAAATTTCTTCCTCTCTCAATTTCTGTCCCATCGGGGGAGTGTTTGACAGGATCTAATCGAGTGGGAGTCGTCGATGGCGTCAAGTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATCTTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATCTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAGTAAAGGGATGTTTAATATGAGTTCAATTATTTGTTTTCCCTTTATTTTTTGCTTTTCAAGGAAGTACAAAGCTTAGTTAGTCGTAGGTGTTTAGAAGGGAAATCGTGAGAGAACTGGAATAAGAATAAAAAAATCTATGAGATCATACTATCTAGAACTCGGCAAACACACAAGAAACGTGAGATTCTCTCGGGGGGAAAAAAGCCTGGAGCAGTTACCGGAAAAAGTTCATAAATTCGGATGAAAACTCAAATTCCCAAAAAAACTCTAAAGACATACATCACTGAGAAATTTTGAAGAGTGTGTTTACCCAATTTCGGCGCCAGGAAGAAAGCCGGAAACGAGAAAATTCAAGAATGAGAGAAAGGAGA</canonical>
            <polymorphic>ATTTAGATTAGTAGAGTAGATATTTGTTTTTTATCACAAAAAACCGAAATGTTTTTTCTAAATTGGCTTAAATAAGAATTTCAAGTTCCTTATTCTATTCAACAAAATTTCCCATTACTATGAACATACAATTTTTTGGCAGATAACATGTTTTGGATTATTTTAATTTACATAGCCTTCAATCACGGTTTGACAATACTTAGTGACTAAAATTTGGAAGTAGTGATTTAAAATCGGAAAAAAAATATTTTTCTTCATTTTTCCCAGACATGATCTGACGATTTGTGGAAACTTGTTTCATACGACTTTCAGGATCAAATTGCTCTTTCATACCGGATGTCTACACCTTTGTAAAGTGTCATCCGATTAGTTTTTCGACTTCTCCTATGCTACGTGACACAACTAAATTATAGTTCGGTTCATAAATTTCTTCCTCTCTCAATTTCTGTCCCATCGGGGGAGTGTTTGACAGGATCTAATCGAGTGGGAGTCGTCGATGRCGTCAAGTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATCTTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATCTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAGTAAAGGGATGTTTAATATGAGTTCAATTATTTGTTTTCCCTTTATTTTTTGCTTTTCAAGGAAGTACAAAGCTTAGTTAGTCGTAGGTGTTTAGAAGGGAAATCGTGAGAGAACTGGAATAAGAATAAAAAAATCTATGAGATCATACTATCTAGAACTCGGCAAACACACAAGAAACGTGAGATTCTCTCGGGGGGAAAAAAGCCTGGAGCAGTTACCGGAAAAAGTTCATAAATTCGGATGAAAACTCAAATTCCCAAAAAAACTCTAAAGACATACATCACTGAGAAATTTTGAAGAGTGTGTTTACCCAATTTCGGCGCCAGGAAGAAAGCCGGAAACGAGAAAATTCAAGAATGAGAGAAAGGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>500 449 51</canonical_bands>
                <polymorphic_bands>949 51</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATGCTACGTGACACAACTAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTCTTCCCATAATTCCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTATGCTACGTGACACAACTAAATTATAGTTCGGTTCATAAATTTCTTCCTCTCTCAATTTCTGTCCCATCGGGGGAGTGTTTGACAGGATCTAATCGAGTGGGAGTCGTCGATGGCGTCAAGTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATCTTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATCTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAG</canonical_amplicon>
		<polymorphic_amplicon>CTATGCTACGTGACACAACTAAATTATAGTTCGGTTCATAAATTTCTTCCTCTCTCAATTTCTGTCCCATCGGGGGAGTGTTTGACAGGATCTAATCGAGTGGGAGTCGTCGATGRCGTCAAGTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATCTTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATCTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20134</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>130132</contig_pos>
        <strand></strand>
        <context>AGTTTCGATC[T/C]TTGTATTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCAAGTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATC</left_flank>
        <right_flank>TTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATCTTTTGATTTGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCTAAATTGGCTTAAATAAGAATTTCAAGTTCCTTATTCTATTCAACAAAATTTCCCATTACTATGAACATACAATTTTTTGGCAGATAACATGTTTTGGATTATTTTAATTTACATAGCCTTCAATCACGGTTTGACAATACTTAGTGACTAAAATTTGGAAGTAGTGATTTAAAATCGGAAAAAAAATATTTTTCTTCATTTTTCCCAGACATGATCTGACGATTTGTGGAAACTTGTTTCATACGACTTTCAGGATCAAATTGCTCTTTCATACCGGATGTCTACACCTTTGTAAAGTGTCATCCGATTAGTTTTTCGACTTCTCCTATGCTACGTGACACAACTAAATTATAGTTCGGTTCATAAATTTCTTCCTCTCTCAATTTCTGTCCCATCGGGGGAGTGTTTGACAGGATCTAATCGAGTGGGAGTCGTCGATGGCGTCAAGTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATCTTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATCTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAGTAAAGGGATGTTTAATATGAGTTCAATTATTTGTTTTCCCTTTATTTTTTGCTTTTCAAGGAAGTACAAAGCTTAGTTAGTCGTAGGTGTTTAGAAGGGAAATCGTGAGAGAACTGGAATAAGAATAAAAAAATCTATGAGATCATACTATCTAGAACTCGGCAAACACACAAGAAACGTGAGATTCTCTCGGGGGGAAAAAAGCCTGGAGCAGTTACCGGAAAAAGTTCATAAATTCGGATGAAAACTCAAATTCCCAAAAAAACTCTAAAGACATACATCACTGAGAAATTTTGAAGAGTGTGTTTACCCAATTTCGGCGCCAGGAAGAAAGCCGGAAACGAGAAAATTCAAGAATGAGAGAAAGGAGAAACTATTTGATTCCATTTTCAGATATCTCGTCGGCCAATCTTCTTCCTTCTTC</canonical>
            <polymorphic>TTTTCTAAATTGGCTTAAATAAGAATTTCAAGTTCCTTATTCTATTCAACAAAATTTCCCATTACTATGAACATACAATTTTTTGGCAGATAACATGTTTTGGATTATTTTAATTTACATAGCCTTCAATCACGGTTTGACAATACTTAGTGACTAAAATTTGGAAGTAGTGATTTAAAATCGGAAAAAAAATATTTTTCTTCATTTTTCCCAGACATGATCTGACGATTTGTGGAAACTTGTTTCATACGACTTTCAGGATCAAATTGCTCTTTCATACCGGATGTCTACACCTTTGTAAAGTGTCATCCGATTAGTTTTTCGACTTCTCCTATGCTACGTGACACAACTAAATTATAGTTCGGTTCATAAATTTCTTCCTCTCTCAATTTCTGTCCCATCGGGGGAGTGTTTGACAGGATCTAATCGAGTGGGAGTCGTCGATGGCGTCAAGTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATCYTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATCTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAGTAAAGGGATGTTTAATATGAGTTCAATTATTTGTTTTCCCTTTATTTTTTGCTTTTCAAGGAAGTACAAAGCTTAGTTAGTCGTAGGTGTTTAGAAGGGAAATCGTGAGAGAACTGGAATAAGAATAAAAAAATCTATGAGATCATACTATCTAGAACTCGGCAAACACACAAGAAACGTGAGATTCTCTCGGGGGGAAAAAAGCCTGGAGCAGTTACCGGAAAAAGTTCATAAATTCGGATGAAAACTCAAATTCCCAAAAAAACTCTAAAGACATACATCACTGAGAAATTTTGAAGAGTGTGTTTACCCAATTTCGGCGCCAGGAAGAAAGCCGGAAACGAGAAAATTCAAGAATGAGAGAAAGGAGAAACTATTTGATTCCATTTTCAGATATCTCGTCGGCCAATCTTCTTCCTTCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGTGTTTGACAGGATCTAAT</pcr_primer_p1>
		<pcr_primer_p2>TAAGCTTTGTACTTCCTTGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGAGTGTTTGACAGGATCTAATCGAGTGGGAGTCGTCGATGGCGTCAAGTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATCTTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATCTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAGTAAAGGGATGTTTAATATGAGTTCAATTATTTGTTTTCCCTTTATTTTTTGCTTTTCAAGGAAGTACAAAGCTTA</canonical_amplicon>
		<polymorphic_amplicon>GGAGTGTTTGACAGGATCTAATCGAGTGGGAGTCGTCGATGGCGTCAAGTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATCYTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATCTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAGTAAAGGGATGTTTAATATGAGTTCAATTATTTGTTTTCCCTTTATTTTTTGCTTTTCAAGGAAGTACAAAGCTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20135</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>130170</contig_pos>
        <strand></strand>
        <context>CTAAATTGAT[C/G]TTTTGATTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTAGTTTCGATCTTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGAT</left_flank>
        <right_flank>TTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAGTAAAGGGATGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCTATTCAACAAAATTTCCCATTACTATGAACATACAATTTTTTGGCAGATAACATGTTTTGGATTATTTTAATTTACATAGCCTTCAATCACGGTTTGACAATACTTAGTGACTAAAATTTGGAAGTAGTGATTTAAAATCGGAAAAAAAATATTTTTCTTCATTTTTCCCAGACATGATCTGACGATTTGTGGAAACTTGTTTCATACGACTTTCAGGATCAAATTGCTCTTTCATACCGGATGTCTACACCTTTGTAAAGTGTCATCCGATTAGTTTTTCGACTTCTCCTATGCTACGTGACACAACTAAATTATAGTTCGGTTCATAAATTTCTTCCTCTCTCAATTTCTGTCCCATCGGGGGAGTGTTTGACAGGATCTAATCGAGTGGGAGTCGTCGATGGCGTCAAGTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATCTTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATCTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAGTAAAGGGATGTTTAATATGAGTTCAATTATTTGTTTTCCCTTTATTTTTTGCTTTTCAAGGAAGTACAAAGCTTAGTTAGTCGTAGGTGTTTAGAAGGGAAATCGTGAGAGAACTGGAATAAGAATAAAAAAATCTATGAGATCATACTATCTAGAACTCGGCAAACACACAAGAAACGTGAGATTCTCTCGGGGGGAAAAAAGCCTGGAGCAGTTACCGGAAAAAGTTCATAAATTCGGATGAAAACTCAAATTCCCAAAAAAACTCTAAAGACATACATCACTGAGAAATTTTGAAGAGTGTGTTTACCCAATTTCGGCGCCAGGAAGAAAGCCGGAAACGAGAAAATTCAAGAATGAGAGAAAGGAGAAACTATTTGATTCCATTTTCAGATATCTCGTCGGCCAATCTTCTTCCTTCTTCTCTTTTTTTCTAAACTTTGGCTCTATAAAACAACTAAA</canonical>
            <polymorphic>ATTCTATTCAACAAAATTTCCCATTACTATGAACATACAATTTTTTGGCAGATAACATGTTTTGGATTATTTTAATTTACATAGCCTTCAATCACGGTTTGACAATACTTAGTGACTAAAATTTGGAAGTAGTGATTTAAAATCGGAAAAAAAATATTTTTCTTCATTTTTCCCAGACATGATCTGACGATTTGTGGAAACTTGTTTCATACGACTTTCAGGATCAAATTGCTCTTTCATACCGGATGTCTACACCTTTGTAAAGTGTCATCCGATTAGTTTTTCGACTTCTCCTATGCTACGTGACACAACTAAATTATAGTTCGGTTCATAAATTTCTTCCTCTCTCAATTTCTGTCCCATCGGGGGAGTGTTTGACAGGATCTAATCGAGTGGGAGTCGTCGATGGCGTCAAGTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATCTTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATSTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAGTAAAGGGATGTTTAATATGAGTTCAATTATTTGTTTTCCCTTTATTTTTTGCTTTTCAAGGAAGTACAAAGCTTAGTTAGTCGTAGGTGTTTAGAAGGGAAATCGTGAGAGAACTGGAATAAGAATAAAAAAATCTATGAGATCATACTATCTAGAACTCGGCAAACACACAAGAAACGTGAGATTCTCTCGGGGGGAAAAAAGCCTGGAGCAGTTACCGGAAAAAGTTCATAAATTCGGATGAAAACTCAAATTCCCAAAAAAACTCTAAAGACATACATCACTGAGAAATTTTGAAGAGTGTGTTTACCCAATTTCGGCGCCAGGAAGAAAGCCGGAAACGAGAAAATTCAAGAATGAGAGAAAGGAGAAACTATTTGATTCCATTTTCAGATATCTCGTCGGCCAATCTTCTTCCTTCTTCTCTTTTTTTCTAAACTTTGGCTCTATAAAACAACTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>322 182 180 160 76 41 39</canonical_bands>
                <polymorphic_bands>322 221 180 160 76 41</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAGTGTTTGACAGGATCTAAT</pcr_primer_p1>
		<pcr_primer_p2>TAAGCTTTGTACTTCCTTGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGAGTGTTTGACAGGATCTAATCGAGTGGGAGTCGTCGATGGCGTCAAGTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATCTTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATCTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAGTAAAGGGATGTTTAATATGAGTTCAATTATTTGTTTTCCCTTTATTTTTTGCTTTTCAAGGAAGTACAAAGCTTA</canonical_amplicon>
		<polymorphic_amplicon>GGAGTGTTTGACAGGATCTAATCGAGTGGGAGTCGTCGATGGCGTCAAGTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATCTTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATSTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAGTAAAGGGATGTTTAATATGAGTTCAATTATTTGTTTTCCCTTTATTTTTTGCTTTTCAAGGAAGTACAAAGCTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20136</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>130214</contig_pos>
        <strand></strand>
        <context>AGAAGTAAAG[G/A]GATGTTTAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTGATCTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAGTAAAG</left_flank>
        <right_flank>GATGTTTAATATGAGTTCAATTATTTGTTTTCCCTTTATTTTTTGCTTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGCAGATAACATGTTTTGGATTATTTTAATTTACATAGCCTTCAATCACGGTTTGACAATACTTAGTGACTAAAATTTGGAAGTAGTGATTTAAAATCGGAAAAAAAATATTTTTCTTCATTTTTCCCAGACATGATCTGACGATTTGTGGAAACTTGTTTCATACGACTTTCAGGATCAAATTGCTCTTTCATACCGGATGTCTACACCTTTGTAAAGTGTCATCCGATTAGTTTTTCGACTTCTCCTATGCTACGTGACACAACTAAATTATAGTTCGGTTCATAAATTTCTTCCTCTCTCAATTTCTGTCCCATCGGGGGAGTGTTTGACAGGATCTAATCGAGTGGGAGTCGTCGATGGCGTCAAGTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATCTTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATCTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAGTAAAGGGATGTTTAATATGAGTTCAATTATTTGTTTTCCCTTTATTTTTTGCTTTTCAAGGAAGTACAAAGCTTAGTTAGTCGTAGGTGTTTAGAAGGGAAATCGTGAGAGAACTGGAATAAGAATAAAAAAATCTATGAGATCATACTATCTAGAACTCGGCAAACACACAAGAAACGTGAGATTCTCTCGGGGGGAAAAAAGCCTGGAGCAGTTACCGGAAAAAGTTCATAAATTCGGATGAAAACTCAAATTCCCAAAAAAACTCTAAAGACATACATCACTGAGAAATTTTGAAGAGTGTGTTTACCCAATTTCGGCGCCAGGAAGAAAGCCGGAAACGAGAAAATTCAAGAATGAGAGAAAGGAGAAACTATTTGATTCCATTTTCAGATATCTCGTCGGCCAATCTTCTTCCTTCTTCTCTTTTTTTCTAAACTTTGGCTCTATAAAACAACTAAAATCAGTTTTTGAGTGAAAAAAAAAAGAATTGTTCGGAATTTTTG</canonical>
            <polymorphic>TTGGCAGATAACATGTTTTGGATTATTTTAATTTACATAGCCTTCAATCACGGTTTGACAATACTTAGTGACTAAAATTTGGAAGTAGTGATTTAAAATCGGAAAAAAAATATTTTTCTTCATTTTTCCCAGACATGATCTGACGATTTGTGGAAACTTGTTTCATACGACTTTCAGGATCAAATTGCTCTTTCATACCGGATGTCTACACCTTTGTAAAGTGTCATCCGATTAGTTTTTCGACTTCTCCTATGCTACGTGACACAACTAAATTATAGTTCGGTTCATAAATTTCTTCCTCTCTCAATTTCTGTCCCATCGGGGGAGTGTTTGACAGGATCTAATCGAGTGGGAGTCGTCGATGGCGTCAAGTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATCTTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATCTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAGTAAAGRGATGTTTAATATGAGTTCAATTATTTGTTTTCCCTTTATTTTTTGCTTTTCAAGGAAGTACAAAGCTTAGTTAGTCGTAGGTGTTTAGAAGGGAAATCGTGAGAGAACTGGAATAAGAATAAAAAAATCTATGAGATCATACTATCTAGAACTCGGCAAACACACAAGAAACGTGAGATTCTCTCGGGGGGAAAAAAGCCTGGAGCAGTTACCGGAAAAAGTTCATAAATTCGGATGAAAACTCAAATTCCCAAAAAAACTCTAAAGACATACATCACTGAGAAATTTTGAAGAGTGTGTTTACCCAATTTCGGCGCCAGGAAGAAAGCCGGAAACGAGAAAATTCAAGAATGAGAGAAAGGAGAAACTATTTGATTCCATTTTCAGATATCTCGTCGGCCAATCTTCTTCCTTCTTCTCTTTTTTTCTAAACTTTGGCTCTATAAAACAACTAAAATCAGTTTTTGAGTGAAAAAAAAAAGAATTGTTCGGAATTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGTGTTTGACAGGATCTAAT</pcr_primer_p1>
		<pcr_primer_p2>TAAGCTTTGTACTTCCTTGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGAGTGTTTGACAGGATCTAATCGAGTGGGAGTCGTCGATGGCGTCAAGTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATCTTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATCTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAGTAAAGGGATGTTTAATATGAGTTCAATTATTTGTTTTCCCTTTATTTTTTGCTTTTCAAGGAAGTACAAAGCTTA</canonical_amplicon>
		<polymorphic_amplicon>GGAGTGTTTGACAGGATCTAATCGAGTGGGAGTCGTCGATGGCGTCAAGTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATCTTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATCTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAGTAAAGRGATGTTTAATATGAGTTCAATTATTTGTTTTCCCTTTATTTTTTGCTTTTCAAGGAAGTACAAAGCTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20137</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>130239</contig_pos>
        <strand></strand>
        <context>GTTCAATTAT[T/G]TGTTTTCCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTTGGAATTATGGGAAGAAGTAAAGGGATGTTTAATATGAGTTCAATTAT</left_flank>
        <right_flank>TGTTTTCCCTTTATTTTTTGCTTTTCAAGGAAGTACAAAGCTTAGTTAGT</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTAATTTACATAGCCTTCAATCACGGTTTGACAATACTTAGTGACTAAAATTTGGAAGTAGTGATTTAAAATCGGAAAAAAAATATTTTTCTTCATTTTTCCCAGACATGATCTGACGATTTGTGGAAACTTGTTTCATACGACTTTCAGGATCAAATTGCTCTTTCATACCGGATGTCTACACCTTTGTAAAGTGTCATCCGATTAGTTTTTCGACTTCTCCTATGCTACGTGACACAACTAAATTATAGTTCGGTTCATAAATTTCTTCCTCTCTCAATTTCTGTCCCATCGGGGGAGTGTTTGACAGGATCTAATCGAGTGGGAGTCGTCGATGGCGTCAAGTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATCTTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATCTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAGTAAAGGGATGTTTAATATGAGTTCAATTATTTGTTTTCCCTTTATTTTTTGCTTTTCAAGGAAGTACAAAGCTTAGTTAGTCGTAGGTGTTTAGAAGGGAAATCGTGAGAGAACTGGAATAAGAATAAAAAAATCTATGAGATCATACTATCTAGAACTCGGCAAACACACAAGAAACGTGAGATTCTCTCGGGGGGAAAAAAGCCTGGAGCAGTTACCGGAAAAAGTTCATAAATTCGGATGAAAACTCAAATTCCCAAAAAAACTCTAAAGACATACATCACTGAGAAATTTTGAAGAGTGTGTTTACCCAATTTCGGCGCCAGGAAGAAAGCCGGAAACGAGAAAATTCAAGAATGAGAGAAAGGAGAAACTATTTGATTCCATTTTCAGATATCTCGTCGGCCAATCTTCTTCCTTCTTCTCTTTTTTTCTAAACTTTGGCTCTATAAAACAACTAAAATCAGTTTTTGAGTGAAAAAAAAAAGAATTGTTCGGAATTTTTGATTGTTATGAATTGTGGTTAAAGGG</canonical>
            <polymorphic>TTTTAATTTACATAGCCTTCAATCACGGTTTGACAATACTTAGTGACTAAAATTTGGAAGTAGTGATTTAAAATCGGAAAAAAAATATTTTTCTTCATTTTTCCCAGACATGATCTGACGATTTGTGGAAACTTGTTTCATACGACTTTCAGGATCAAATTGCTCTTTCATACCGGATGTCTACACCTTTGTAAAGTGTCATCCGATTAGTTTTTCGACTTCTCCTATGCTACGTGACACAACTAAATTATAGTTCGGTTCATAAATTTCTTCCTCTCTCAATTTCTGTCCCATCGGGGGAGTGTTTGACAGGATCTAATCGAGTGGGAGTCGTCGATGGCGTCAAGTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATCTTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATCTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAGTAAAGGGATGTTTAATATGAGTTCAATTATKTGTTTTCCCTTTATTTTTTGCTTTTCAAGGAAGTACAAAGCTTAGTTAGTCGTAGGTGTTTAGAAGGGAAATCGTGAGAGAACTGGAATAAGAATAAAAAAATCTATGAGATCATACTATCTAGAACTCGGCAAACACACAAGAAACGTGAGATTCTCTCGGGGGGAAAAAAGCCTGGAGCAGTTACCGGAAAAAGTTCATAAATTCGGATGAAAACTCAAATTCCCAAAAAAACTCTAAAGACATACATCACTGAGAAATTTTGAAGAGTGTGTTTACCCAATTTCGGCGCCAGGAAGAAAGCCGGAAACGAGAAAATTCAAGAATGAGAGAAAGGAGAAACTATTTGATTCCATTTTCAGATATCTCGTCGGCCAATCTTCTTCCTTCTTCTCTTTTTTTCTAAACTTTGGCTCTATAAAACAACTAAAATCAGTTTTTGAGTGAAAAAAAAAAGAATTGTTCGGAATTTTTGATTGTTATGAATTGTGGTTAAAGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGCTCGACGCTTTATTTTTA</pcr_primer_p1>
		<pcr_primer_p2>CTTATTCCAGTTCTCTCACGAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATCTTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATCTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAGTAAAGGGATGTTTAATATGAGTTCAATTATTTGTTTTCCCTTTATTTTTTGCTTTTCAAGGAAGTACAAAGCTTAGTTAGTCGTAGGTGTTTAGAAGGGAAATCGTGAGAGAACTGGAATAAG</canonical_amplicon>
		<polymorphic_amplicon>GTAGCTCGACGCTTTATTTTTAAAAAGAAACAAATTAGTTTCGATCTTTGTATTTTAGACTCTCGTCTCTCCCACTAAATTGATCTTTTGATTTGAACGGAAGTTTGGAATTATGGGAAGAAGTAAAGGGATGTTTAATATGAGTTCAATTATKTGTTTTCCCTTTATTTTTTGCTTTTCAAGGAAGTACAAAGCTTAGTTAGTCGTAGGTGTTTAGAAGGGAAATCGTGAGAGAACTGGAATAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20140</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>131830</contig_pos>
        <strand>+</strand>
        <context>ATTCAGATAT[A/C]AAAAAATGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTTATGCGGGAAAGACACATAGAATTCACTCATCAGTGGATTCAGATAT</left_flank>
        <right_flank>AAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTTTTGTTTTATTGTCTCTATTGATATTTTTCCAAAGTTATCAGTTGAGCAACGCACAACCGGTGGAAGGTTCCGAAATTTGATTTTTAAAAATGTTATTTTTTGTTCATAAACTTTTCGGCTTCTTTTTGGTGTTTCAAGAAAAAGCAAAAAAAAACGTATTTTTTGAGAAATATATCAACCAGGAAGAAGCCGTGAAAGAGAAAACTTTCAAAGAAATGAATAAGGTTAGGTCATCAATAGAAAAGAAACTCTGAGTTCATCGAAAATTCTGGCGTATAAGGCGTCTAGTTAAAAATAAATCTGTAGCTTTTGGATGTGGGGGGGGGGGGGCAATCGTCGTTGGAAAGCTGTTGATAATCTTTTAAAGCCTCCTTTAAAAGTATAATCGGATTTGATGAAAAAACATAAATGGACAGACCATGGACTTGTTTTCAAGAAGGGAGAGTTATGCGGGAAAGACACATAGAATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAG</canonical>
            <polymorphic>ACTTTTTTGTTTTATTGTCTCTATTGATATTTTTCCAAAGTTATCAGTTGAGCAACGCACAACCGGTGGAAGGTTCCGAAATTTGATTTTTAAAAATGTTATTTTTTGTTCATAAACTTTTCGGCTTCTTTTTGGTGTTTCAAGAAAAAGCAAAAAAAAACGTATTTTTTGAGAAATATATCAACCAGGAAGAAGCCGTGAAAGAGAAAACTTTCAAAGAAATGAATAAGGTTAGGTCATCAATAGAAAAGAAACTCTGAGTTCATCGAAAATTCTGGCGTATAAGGCGTCTAGTTAAAAATAAATCTGTAGCTTTTGGATGTGGGGGGGGGGGGGCAATCGTCGTTGGAAAGCTGTTGATAATCTTTTAAAGCCTCCTTTAAAAGTATAATCGGATTTGATGAAAAAACATAAATGGACAGACCATGGACTTGTTTTCAAGAAGGGAGAGTTATGCGGGAAAGACACATAGAATTCACTCATCAGTGGATTCAGATATMAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAAGAAGGGAGAGTTATG</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTCCTCTGTGTTATCAACT</pcr_primer_p2>
		<pcr_amplicon_size>587</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAAGAAGGGAGAGTTATGCGGGAAAGACACATAGAATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAAGAAGGGAGAGTTATGCGGGAAAGACACATAGAATTCACTCATCAGTGGATTCAGATATMAAAAAATGAGAGGAGGTGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20141</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>132323</contig_pos>
        <strand>+</strand>
        <context>CCTGATCAGT[A/T]CTATTAGTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGT</left_flank>
        <right_flank>CTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGAATTCAAAACTATATCCAACTTCTATGGACCCACCAGTTTTGATTCTAGCGTCAGAATTGAGAAAATGTTATTCAATAAAATATGAAAATGATAGAACTAAATAATAGAAAGAGCAGAGTTACAGAAAATAATAACAAGAACATCTTTACAAAACAAAATCTAACTTTGTTAGACCCACCAATCGGATTCTAGAGTCAGAATTCAAAAGATATTATTCAATATTCTGAAAATGGGCTCCCTAATCTTCTCTCCTCTGATTTGAAGACAATACAATATGGTGAATAAGTGATATCAATGTACTAGGTACATTTTGGAATGAGATATTCCAAATAAGGATCCAAATTAGAACCGGGAAGTCATCGGGAGGAGGAGTAATATGTGAGAAAGATAGAAGAACGTCGTCAATTTTC</canonical>
            <polymorphic>AGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTWCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGAATTCAAAACTATATCCAACTTCTATGGACCCACCAGTTTTGATTCTAGCGTCAGAATTGAGAAAATGTTATTCAATAAAATATGAAAATGATAGAACTAAATAATAGAAAGAGCAGAGTTACAGAAAATAATAACAAGAACATCTTTACAAAACAAAATCTAACTTTGTTAGACCCACCAATCGGATTCTAGAGTCAGAATTCAAAAGATATTATTCAATATTCTGAAAATGGGCTCCCTAATCTTCTCTCCTCTGATTTGAAGACAATACAATATGGTGAATAAGTGATATCAATGTACTAGGTACATTTTGGAATGAGATATTCCAAATAAGGATCCAAATTAGAACCGGGAAGTCATCGGGAGGAGGAGTAATATGTGAGAAAGATAGAAGAACGTCGTCAATTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGGAGGTGGAAAAATCTACT</pcr_primer_p1>
		<pcr_primer_p2>GCATCAGAATTCAAAAGATGTTA</pcr_primer_p2>
		<pcr_amplicon_size>548</pcr_amplicon_size>
		<canonical_amplicon>AGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGC</canonical_amplicon>
		<polymorphic_amplicon>AGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTWCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20142</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>132303</contig_pos>
        <strand>+</strand>
        <context>CTGGTGMKGT[A/T]CTGTAAATCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGT</left_flank>
        <right_flank>CTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGAATTCAAAACTATATCCAACTTCTATGGACCCACCAGTTTTGATTCTAGCGTCAGAATTGAGAAAATGTTATTCAATAAAATATGAAAATGATAGAACTAAATAATAGAAAGAGCAGAGTTACAGAAAATAATAACAAGAACATCTTTACAAAACAAAATCTAACTTTGTTAGACCCACCAATCGGATTCTAGAGTCAGAATTCAAAAGATATTATTCAATATTCTGAAAATGGGCTCCCTAATCTTCTCTCCTCTGATTTGAAGACAATACAATATGGTGAATAAGTGATATCAATGTACTAGGTACATTTTGGAATGAGATATTCCAAATAAGGATCCAAATTAGAACCGGGAAGTCATCGGGAGGAGGAGTAATATGTGAGAAAGATA</canonical>
            <polymorphic>ATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTWCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGAATTCAAAACTATATCCAACTTCTATGGACCCACCAGTTTTGATTCTAGCGTCAGAATTGAGAAAATGTTATTCAATAAAATATGAAAATGATAGAACTAAATAATAGAAAGAGCAGAGTTACAGAAAATAATAACAAGAACATCTTTACAAAACAAAATCTAACTTTGTTAGACCCACCAATCGGATTCTAGAGTCAGAATTCAAAAGATATTATTCAATATTCTGAAAATGGGCTCCCTAATCTTCTCTCCTCTGATTTGAAGACAATACAATATGGTGAATAAGTGATATCAATGTACTAGGTACATTTTGGAATGAGATATTCCAAATAAGGATCCAAATTAGAACCGGGAAGTCATCGGGAGGAGGAGTAATATGTGAGAAAGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAGGAGGTGGAAAAATCTAC</pcr_primer_p1>
		<pcr_primer_p2>ATATATCCTTTCTTCCTCTGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>522</pcr_amplicon_size>
		<canonical_amplicon>GAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATAT</canonical_amplicon>
		<polymorphic_amplicon>GAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTWCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20143</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>132300</contig_pos>
        <strand>+</strand>
        <context>GTCCTGGTGM[G/T]GTWCTGTAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGA</left_flank>
        <right_flank>GTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGAATTCAAAACTATATCCAACTTCTATGGACCCACCAGTTTTGATTCTAGCGTCAGAATTGAGAAAATGTTATTCAATAAAATATGAAAATGATAGAACTAAATAATAGAAAGAGCAGAGTTACAGAAAATAATAACAAGAACATCTTTACAAAACAAAATCTAACTTTGTTAGACCCACCAATCGGATTCTAGAGTCAGAATTCAAAAGATATTATTCAATATTCTGAAAATGGGCTCCCTAATCTTCTCTCCTCTGATTTGAAGACAATACAATATGGTGAATAAGTGATATCAATGTACTAGGTACATTTTGGAATGAGATATTCCAAATAAGGATCCAAATTAGAACCGGGAAGTCATCGGGAGGAGGAGTAATATGTGAGAAAG</canonical>
            <polymorphic>AGAATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGAKGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGAATTCAAAACTATATCCAACTTCTATGGACCCACCAGTTTTGATTCTAGCGTCAGAATTGAGAAAATGTTATTCAATAAAATATGAAAATGATAGAACTAAATAATAGAAAGAGCAGAGTTACAGAAAATAATAACAAGAACATCTTTACAAAACAAAATCTAACTTTGTTAGACCCACCAATCGGATTCTAGAGTCAGAATTCAAAAGATATTATTCAATATTCTGAAAATGGGCTCCCTAATCTTCTCTCCTCTGATTTGAAGACAATACAATATGGTGAATAAGTGATATCAATGTACTAGGTACATTTTGGAATGAGATATTCCAAATAAGGATCCAAATTAGAACCGGGAAGTCATCGGGAGGAGGAGTAATATGTGAGAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGGAGGTGGAAAAATCTACT</pcr_primer_p1>
		<pcr_primer_p2>ATCCTTTCTTCCTCTGTGTTATC</pcr_primer_p2>
		<pcr_amplicon_size>517</pcr_amplicon_size>
		<canonical_amplicon>AGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGAT</canonical_amplicon>
		<polymorphic_amplicon>AGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGAKGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20144</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>132299</contig_pos>
        <strand>+</strand>
        <context>AGTCCTGGTG[A/C]KGTWCTGTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTG</left_flank>
        <right_flank>TGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGAATTCAAAACTATATCCAACTTCTATGGACCCACCAGTTTTGATTCTAGCGTCAGAATTGAGAAAATGTTATTCAATAAAATATGAAAATGATAGAACTAAATAATAGAAAGAGCAGAGTTACAGAAAATAATAACAAGAACATCTTTACAAAACAAAATCTAACTTTGTTAGACCCACCAATCGGATTCTAGAGTCAGAATTCAAAAGATATTATTCAATATTCTGAAAATGGGCTCCCTAATCTTCTCTCCTCTGATTTGAAGACAATACAATATGGTGAATAAGTGATATCAATGTACTAGGTACATTTTGGAATGAGATATTCCAAATAAGGATCCAAATTAGAACCGGGAAGTCATCGGGAGGAGGAGTAATATGTGAGAAA</canonical>
            <polymorphic>TAGAATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGMTGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGAATTCAAAACTATATCCAACTTCTATGGACCCACCAGTTTTGATTCTAGCGTCAGAATTGAGAAAATGTTATTCAATAAAATATGAAAATGATAGAACTAAATAATAGAAAGAGCAGAGTTACAGAAAATAATAACAAGAACATCTTTACAAAACAAAATCTAACTTTGTTAGACCCACCAATCGGATTCTAGAGTCAGAATTCAAAAGATATTATTCAATATTCTGAAAATGGGCTCCCTAATCTTCTCTCCTCTGATTTGAAGACAATACAATATGGTGAATAAGTGATATCAATGTACTAGGTACATTTTGGAATGAGATATTCCAAATAAGGATCCAAATTAGAACCGGGAAGTCATCGGGAGGAGGAGTAATATGTGAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGGAGGTGGAAAAATCTACT</pcr_primer_p1>
		<pcr_primer_p2>ATCCTTTCTTCCTCTGTGTTATC</pcr_primer_p2>
		<pcr_amplicon_size>517</pcr_amplicon_size>
		<canonical_amplicon>AGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGAT</canonical_amplicon>
		<polymorphic_amplicon>AGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGMTGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20145</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>135417</contig_pos>
        <strand>+</strand>
        <context>AGTTGGCTCT[C/T]GACTTCAATC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGGGGAAGAAGAAGGCTGTGTGCGGCATCGAGACAAGCCAGTTGGCTCT</left_flank>
        <right_flank>GACTTCAATCAAAAATGTCAATGTTCTGAATCGACTTGTCACAAATGTTG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACCAAACACTTACCTCGACGGCCAAGGAAAACCGAAATGAATGATTTATCAGTTTTTCATGAATCACATGGGCACGAATAGAACAGAAAACAAGCTTAGAAACCCATTTGACAAAGGTTATACCCTCTCATCTATTCTCTGTTCTTTTCTTGGAACCCAAAAAGTCAATACATCTTTTGTTTCTTTTTTGGCGGGACCGACCTCAATTGTTCTAGAACGTTAGTCAGTCGTTTTTCCAACATCCTGCCTTTCCATGGTTCTTTATGTCAACGCGGGGCGCCCAGGTTACTACCAAACTACCCTCCGGGTCACCTGAATAGTTATTGATGGCGTCTGTCAGTCAAATTGCCCACCAAAGCTATTATTGGATGGCGGAAGAGGAAAAAAATCAGGAAATTTTCTAGGGAAAAAGAAAGAAACTTGGAGACAAACTGGTTGATATGTCTGAAGGGGAAGAAGAAGGCTGTGTGCGGCATCGAGACAAGCCAGTTGGCTCTTGACTTCAATCAAAAATGTCAATGTTCTGAATCGACTTGTCACAAATGTTGTGCTTACCGCAAAAAGCAGCGACATATTATATCAGAAGAACATCTAGACAGACAAGAGTTCTGAGTCTTAGCTTAGGACTCTTGGTTCAAGACTCTTGGCCCTAGACTCTTGCCCCAAGACTCTAAGGTTAGAGATCCTGAAACAGGCTAGAGCAAAGAGCAAAAAGAAGAAGAGGGAAGTTGAAAAATTGAAATGTGAAATGTGAAATTTATGATTGTTGGAAGTCGCGAAGACCTCAAAAATAGAAAAAAAATTGGGTGGAAATAATTTCCAGACATTCATCATCATTTTCTTCTAAAACTAGACACCTTTTTATATTTATTTGAACAATTTTTTGAATTTCTGAGAATCCGTCATTCTAAGATTTTTAAATGAGTTTCGTGGTTTGGTAAAGAAAACATTCCTTCATCAGATTTTCGAATTCCTACCGCTCAAAGATCTTTGGGTGA</canonical>
            <polymorphic>CCACCAAACACTTACCTCGACGGCCAAGGAAAACCGAAATGAATGATTTATCAGTTTTTCATGAATCACATGGGCACGAATAGAACAGAAAACAAGCTTAGAAACCCATTTGACAAAGGTTATACCCTCTCATCTATTCTCTGTTCTTTTCTTGGAACCCAAAAAGTCAATACATCTTTTGTTTCTTTTTTGGCGGGACCGACCTCAATTGTTCTAGAACGTTAGTCAGTCGTTTTTCCAACATCCTGCCTTTCCATGGTTCTTTATGTCAACGCGGGGCGCCCAGGTTACTACCAAACTACCCTCCGGGTCACCTGAATAGTTATTGATGGCGTCTGTCAGTCAAATTGCCCACCAAAGCTATTATTGGATGGCGGAAGAGGAAAAAAATCAGGAAATTTTCTAGGGAAAAAGAAAGAAACTTGGAGACAAACTGGTTGATATGTCTGAAGGGGAAGAAGAAGGCTGTGTGCGGCATCGAGACAAGCCAGTTGGCTCTYGACTTCAATCAAAAATGTCAATGTTCTGAATCGACTTGTCACAAATGTTGTGCTTACCGCAAAAAGCAGCGACATATTATATCAGAAGAACATCTAGACAGACAAGAGTTCTGAGTCTTAGCTTAGGACTCTTGGTTCAAGACTCTTGGCCCTAGACTCTTGCCCCAAGACTCTAAGGTTAGAGATCCTGAAACAGGCTAGAGCAAAGAGCAAAAAGAAGAAGAGGGAAGTTGAAAAATTGAAATGTGAAATGTGAAATTTATGATTGTTGGAAGTCGCGAAGACCTCAAAAATAGAAAAAAAATTGGGTGGAAATAATTTCCAGACATTCATCATCATTTTCTTCTAAAACTAGACACCTTTTTATATTTATTTGAACAATTTTTTGAATTTCTGAGAATCCGTCATTCTAAGATTTTTAAATGAGTTTCGTGGTTTGGTAAAGAAAACATTCCTTCATCAGATTTTCGAATTCCTACCGCTCAAAGATCTTTGGGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATTTTCTAGGGAAAAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>AGTCTTGAACCAAGAGTCCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAATTTTCTAGGGAAAAAGAAAGAAACTTGGAGACAAACTGGTTGATATGTCTGAAGGGGAAGAAGAAGGCTGTGTGCGGCATCGAGACAAGCCAGTTGGCTCTTGACTTCAATCAAAAATGTCAATGTTCTGAATCGACTTGTCACAAATGTTGTGCTTACCGCAAAAAGCAGCGACATATTATATCAGAAGAACATCTAGACAGACAAGAGTTCTGAGTCTTAGCTTAGGACTCTTGGTTCAAGACT</canonical_amplicon>
		<polymorphic_amplicon>GAAATTTTCTAGGGAAAAAGAAAGAAACTTGGAGACAAACTGGTTGATATGTCTGAAGGGGAAGAAGAAGGCTGTGTGCGGCATCGAGACAAGCCAGTTGGCTCTYGACTTCAATCAAAAATGTCAATGTTCTGAATCGACTTGTCACAAATGTTGTGCTTACCGCAAAAAGCAGCGACATATTATATCAGAAGAACATCTAGACAGACAAGAGTTCTGAGTCTTAGCTTAGGACTCTTGGTTCAAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20146</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>139463</contig_pos>
        <strand>+</strand>
        <context>TGGGACCAAM[A/G]AGGAAGAGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGATTTGAGATAATCGCTTTTGGGTTTCTTTGTTGTCTACTGGGACCAAA</left_flank>
        <right_flank>AGGAAGAGGGTTTACATACAAAGTTATCAGAGGCCCCGAGTCTAAACGTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCGCGAAGGCCCGGATTACAAGTATCTGTGAATGCAAATTTCTCCATCTAAGTCTGTTTTACACTCTCCAAAATTTTGTTACCGATCGGAAGCTTGACAACCGAGCTTCAGATTCTTGAAAATGGTAATAATGGTCTAATATCAACTGAGAGTTACGTTTCTATTCATCTTATTGATCGGTACAGTAGACACGCAGGTTCGAAAAAGTTGAAATAACAAAATCAAATTGGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGAAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTTCTTTGTTGTCTACTGGGACCAAAAAGGAAGAGGGTTTACATACAAAGTTATCAGAGGCCCCGAGTCTAAACGTACATAATTACACTCTTCTAGTCGTTTTCCTTTTTTTTCCTTTTTCTTTTCTCGCTTTGTTGTTTTTTTATTCTCTTTTTAGCTCTCTTCAGAGTTCTATGAATCGTGAGAATTTCTAAAGAGAAAATTTTCTTTTTCTTGAACACATGAACTCAAATGGGAAAACATGGAAATGAGAAATGAAGAAGAAAAAAAACTAATATTTGTATTCTGAATCCGTTACGTTCTCTGGAAAAGGGTAAAAACACAATTTGTGTGTTTGTTTCATATAATTTTTTCGCATTTTCCAGAACCAATCTAACAAATTGAAAATACCGAAATTGTTATGTTAGATGTATGACAACAACAGTGTCTGTCACCTAATTCCCACGAGAACGCTTTTATTTTTGATATGTGTTTTTGCACAACTTCCGCGTTCAAAATCCCAACTCGACAATTTTTGGAATGTATAT</canonical>
            <polymorphic>CCCGCGAAGGCCCGGATTACAAGTATCTGTGAATGCAAATTTCTCCATCTAAGTCTGTTTTACACTCTCCAAAATTTTGTTACCGATCGGAAGCTTGACAACCGAGCTTCAGATTCTTGAAAATGGTAATAATGGTCTAATATCAACTGAGAGTTACGTTTCTATTCATCTTATTGATCGGTACAGTAGACACGCAGGTTCGAAAAAGTTGAAATAACAAAATCAAATTGGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGAAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTTCTTTGTTGTCTACTGGGACCAAARAGGAAGAGGGTTTACATACAAAGTTATCAGAGGCCCCGAGTCTAAACGTACATAATTACACTCTTCTAGTCGTTTTCCTTTTTTTTCCTTTTTCTTTTCTCGCTTTGTTGTTTTTTTATTCTCTTTTTAGCTCTCTTCAGAGTTCTATGAATCGTGAGAATTTCTAAAGAGAAAATTTTCTTTTTCTTGAACACATGAACTCAAATGGGAAAACATGGAAATGAGAAATGAAGAAGAAAAAAAACTAATATTTGTATTCTGAATCCGTTACGTTCTCTGGAAAAGGGTAAAAACACAATTTGTGTGTTTGTTTCATATAATTTTTTCGCATTTTCCAGAACCAATCTAACAAATTGAAAATACCGAAATTGTTATGTTAGATGTATGACAACAACAGTGTCTGTCACCTAATTCCCACGAGAACGCTTTTATTTTTGATATGTGTTTTTGCACAACTTCCGCGTTCAAAATCCCAACTCGACAATTTTTGGAATGTATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTTGAAAAAGTGGTCTTG</pcr_primer_p1>
		<pcr_primer_p2>CTTTAGAAATTCTCACGATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTTCTTTGTTGTCTACTGGGACCAAAAAGGAAGAGGGTTTACATACAAAGTTATCAGAGGCCCCGAGTCTAAACGTACATAATTACACTCTTCTAGTCGTTTTCCTTTTTTTTCCTTTTTCTTTTCTCGCTTTGTTGTTTTTTTATTCTCTTTTTAGCTCTCTTCAGAGTTCTATGAATCGTGAGAATTTCTAAAG</canonical_amplicon>
		<polymorphic_amplicon>GCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTTCTTTGTTGTCTACTGGGACCAAARAGGAAGAGGGTTTACATACAAAGTTATCAGAGGCCCCGAGTCTAAACGTACATAATTACACTCTTCTAGTCGTTTTCCTTTTTTTTCCTTTTTCTTTTCTCGCTTTGTTGTTTTTTTATTCTCTTTTTAGCTCTCTTCAGAGTTCTATGAATCGTGAGAATTTCTAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20147</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>139462</contig_pos>
        <strand>+</strand>
        <context>CTGGGACCAA[A/C]RAGGAAGAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGGATTTGAGATAATCGCTTTTGGGTTTCTTTGTTGTCTACTGGGACCAA</left_flank>
        <right_flank>AAGGAAGAGGGTTTACATACAAAGTTATCAGAGGCCCCGAGTCTAAACGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCCGCGAAGGCCCGGATTACAAGTATCTGTGAATGCAAATTTCTCCATCTAAGTCTGTTTTACACTCTCCAAAATTTTGTTACCGATCGGAAGCTTGACAACCGAGCTTCAGATTCTTGAAAATGGTAATAATGGTCTAATATCAACTGAGAGTTACGTTTCTATTCATCTTATTGATCGGTACAGTAGACACGCAGGTTCGAAAAAGTTGAAATAACAAAATCAAATTGGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGAAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTTCTTTGTTGTCTACTGGGACCAAAAAGGAAGAGGGTTTACATACAAAGTTATCAGAGGCCCCGAGTCTAAACGTACATAATTACACTCTTCTAGTCGTTTTCCTTTTTTTTCCTTTTTCTTTTCTCGCTTTGTTGTTTTTTTATTCTCTTTTTAGCTCTCTTCAGAGTTCTATGAATCGTGAGAATTTCTAAAGAGAAAATTTTCTTTTTCTTGAACACATGAACTCAAATGGGAAAACATGGAAATGAGAAATGAAGAAGAAAAAAAACTAATATTTGTATTCTGAATCCGTTACGTTCTCTGGAAAAGGGTAAAAACACAATTTGTGTGTTTGTTTCATATAATTTTTTCGCATTTTCCAGAACCAATCTAACAAATTGAAAATACCGAAATTGTTATGTTAGATGTATGACAACAACAGTGTCTGTCACCTAATTCCCACGAGAACGCTTTTATTTTTGATATGTGTTTTTGCACAACTTCCGCGTTCAAAATCCCAACTCGACAATTTTTGGAATGTATA</canonical>
            <polymorphic>GCCCGCGAAGGCCCGGATTACAAGTATCTGTGAATGCAAATTTCTCCATCTAAGTCTGTTTTACACTCTCCAAAATTTTGTTACCGATCGGAAGCTTGACAACCGAGCTTCAGATTCTTGAAAATGGTAATAATGGTCTAATATCAACTGAGAGTTACGTTTCTATTCATCTTATTGATCGGTACAGTAGACACGCAGGTTCGAAAAAGTTGAAATAACAAAATCAAATTGGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGAAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTTCTTTGTTGTCTACTGGGACCAAMAAGGAAGAGGGTTTACATACAAAGTTATCAGAGGCCCCGAGTCTAAACGTACATAATTACACTCTTCTAGTCGTTTTCCTTTTTTTTCCTTTTTCTTTTCTCGCTTTGTTGTTTTTTTATTCTCTTTTTAGCTCTCTTCAGAGTTCTATGAATCGTGAGAATTTCTAAAGAGAAAATTTTCTTTTTCTTGAACACATGAACTCAAATGGGAAAACATGGAAATGAGAAATGAAGAAGAAAAAAAACTAATATTTGTATTCTGAATCCGTTACGTTCTCTGGAAAAGGGTAAAAACACAATTTGTGTGTTTGTTTCATATAATTTTTTCGCATTTTCCAGAACCAATCTAACAAATTGAAAATACCGAAATTGTTATGTTAGATGTATGACAACAACAGTGTCTGTCACCTAATTCCCACGAGAACGCTTTTATTTTTGATATGTGTTTTTGCACAACTTCCGCGTTCAAAATCCCAACTCGACAATTTTTGGAATGTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTTGAAAAAGTGGTCTTG</pcr_primer_p1>
		<pcr_primer_p2>CTTTAGAAATTCTCACGATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTTCTTTGTTGTCTACTGGGACCAAAAAGGAAGAGGGTTTACATACAAAGTTATCAGAGGCCCCGAGTCTAAACGTACATAATTACACTCTTCTAGTCGTTTTCCTTTTTTTTCCTTTTTCTTTTCTCGCTTTGTTGTTTTTTTATTCTCTTTTTAGCTCTCTTCAGAGTTCTATGAATCGTGAGAATTTCTAAAG</canonical_amplicon>
		<polymorphic_amplicon>GCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTTCTTTGTTGTCTACTGGGACCAAMAAGGAAGAGGGTTTACATACAAAGTTATCAGAGGCCCCGAGTCTAAACGTACATAATTACACTCTTCTAGTCGTTTTCCTTTTTTTTCCTTTTTCTTTTCTCGCTTTGTTGTTTTTTTATTCTCTTTTTAGCTCTCTTCAGAGTTCTATGAATCGTGAGAATTTCTAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20148</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>139332</contig_pos>
        <strand></strand>
        <context>AACAGGAAGT[C/T]TTAAAGCACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGT</left_flank>
        <right_flank>TTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGACTTTTAACTTTGTTCGCAAGCAAGGTACAGTTCTCCAAATAGTATCATTTTGTAGTACTCGTCGAGCTCTATTATATTTGATTTAGTTGGTCTAAAAATTTTGATTCTGAAAGAAATAATGGCAATGCCCGCGAAGGCCCGGATTACAAGTATCTGTGAATGCAAATTTCTCCATCTAAGTCTGTTTTACACTCTCCAAAATTTTGTTACCGATCGGAAGCTTGACAACCGAGCTTCAGATTCTTGAAAATGGTAATAATGGTCTAATATCAACTGAGAGTTACGTTTCTATTCATCTTATTGATCGGTACAGTAGACACGCAGGTTCGAAAAAGTTGAAATAACAAAATCAAATTGGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGAAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTTCTTTGTTGTCTACTGGGACCAAAAAGGAAGAGGGTTTACATACAAAGTTATCAGAGGCCCCGAGTCTAAACGTACATAATTACACTCTTCTAGTCGTTTTCCTTTTTTTTCCTTTTTCTTTTCTCGCTTTGTTGTTTTTTTATTCTCTTTTTAGCTCTCTTCAGAGTTCTATGAATCGTGAGAATTTCTAAAGAGAAAATTTTCTTTTTCTTGAACACATGAACTCAAATGGGAAAACATGGAAATGAGAAATGAAGAAGAAAAAAAACTAATATTTGTATTCTGAATCCGTTACGTTCTCTGGAAAAGGGTAAAAACACAATTTGTGTGTTTGTTTCATATAATTTTTTCGCATTTTCCAGAACCAATCTAACAAATTGAAAATACCGAAAT</canonical>
            <polymorphic>ATGACTTTTAACTTTGTTCGCAAGCAAGGTACAGTTCTCCAAATAGTATCATTTTGTAGTACTCGTCGAGCTCTATTATATTTGATTTAGTTGGTCTAAAAATTTTGATTCTGAAAGAAATAATGGCAATGCCCGCGAAGGCCCGGATTACAAGTATCTGTGAATGCAAATTTCTCCATCTAAGTCTGTTTTACACTCTCCAAAATTTTGTTACCGATCGGAAGCTTGACAACCGAGCTTCAGATTCTTGAAAATGGTAATAATGGTCTAATATCAACTGAGAGTTACGTTTCTATTCATCTTATTGATCGGTACAGTAGACACGCAGGTTCGAAAAAGTTGAAATAACAAAATCAAATTGGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGAAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTYTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTTCTTTGTTGTCTACTGGGACCAAAAAGGAAGAGGGTTTACATACAAAGTTATCAGAGGCCCCGAGTCTAAACGTACATAATTACACTCTTCTAGTCGTTTTCCTTTTTTTTCCTTTTTCTTTTCTCGCTTTGTTGTTTTTTTATTCTCTTTTTAGCTCTCTTCAGAGTTCTATGAATCGTGAGAATTTCTAAAGAGAAAATTTTCTTTTTCTTGAACACATGAACTCAAATGGGAAAACATGGAAATGAGAAATGAAGAAGAAAAAAAACTAATATTTGTATTCTGAATCCGTTACGTTCTCTGGAAAAGGGTAAAAACACAATTTGTGTGTTTGTTTCATATAATTTTTTCGCATTTTCCAGAACCAATCTAACAAATTGAAAATACCGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATCTCATAGCCTTAGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAACCCAAAAGCGATTATCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGAAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTT</canonical_amplicon>
		<polymorphic_amplicon>GGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGAAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTYTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20149</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>139278</contig_pos>
        <strand>+</strand>
        <context>AAAAATTGAA[C/T]AATGACAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACACAAAAAAATTTAAGAAAAATACTTCGAAGGTCACCCAAAAAATTGAA</left_flank>
        <right_flank>AATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGACAAAAAATCGTGTCCCGGCCCGGGCCCACGCGGCAAGGGCCAGCCACTTTATGACTTTTAACTTTGTTCGCAAGCAAGGTACAGTTCTCCAAATAGTATCATTTTGTAGTACTCGTCGAGCTCTATTATATTTGATTTAGTTGGTCTAAAAATTTTGATTCTGAAAGAAATAATGGCAATGCCCGCGAAGGCCCGGATTACAAGTATCTGTGAATGCAAATTTCTCCATCTAAGTCTGTTTTACACTCTCCAAAATTTTGTTACCGATCGGAAGCTTGACAACCGAGCTTCAGATTCTTGAAAATGGTAATAATGGTCTAATATCAACTGAGAGTTACGTTTCTATTCATCTTATTGATCGGTACAGTAGACACGCAGGTTCGAAAAAGTTGAAATAACAAAATCAAATTGGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGAAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTTCTTTGTTGTCTACTGGGACCAAAAAGGAAGAGGGTTTACATACAAAGTTATCAGAGGCCCCGAGTCTAAACGTACATAATTACACTCTTCTAGTCGTTTTCCTTTTTTTTCCTTTTTCTTTTCTCGCTTTGTTGTTTTTTTATTCTCTTTTTAGCTCTCTTCAGAGTTCTATGAATCGTGAGAATTTCTAAAGAGAAAATTTTCTTTTTCTTGAACACATGAACTCAAATGGGAAAACATGGAAATGAGAAATGAAGAAGAAAAAAAACTAATATTTGTATTCTGAATCCGTTACGTTCTCTGGAAAAGGGTAAAAACACAATTTGTGTGTTTGTTTCA</canonical>
            <polymorphic>CAGACAAAAAATCGTGTCCCGGCCCGGGCCCACGCGGCAAGGGCCAGCCACTTTATGACTTTTAACTTTGTTCGCAAGCAAGGTACAGTTCTCCAAATAGTATCATTTTGTAGTACTCGTCGAGCTCTATTATATTTGATTTAGTTGGTCTAAAAATTTTGATTCTGAAAGAAATAATGGCAATGCCCGCGAAGGCCCGGATTACAAGTATCTGTGAATGCAAATTTCTCCATCTAAGTCTGTTTTACACTCTCCAAAATTTTGTTACCGATCGGAAGCTTGACAACCGAGCTTCAGATTCTTGAAAATGGTAATAATGGTCTAATATCAACTGAGAGTTACGTTTCTATTCATCTTATTGATCGGTACAGTAGACACGCAGGTTCGAAAAAGTTGAAATAACAAAATCAAATTGGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGAAAAATACTTCGAAGGTCACCCAAAAAATTGAAYAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTTCTTTGTTGTCTACTGGGACCAAAAAGGAAGAGGGTTTACATACAAAGTTATCAGAGGCCCCGAGTCTAAACGTACATAATTACACTCTTCTAGTCGTTTTCCTTTTTTTTCCTTTTTCTTTTCTCGCTTTGTTGTTTTTTTATTCTCTTTTTAGCTCTCTTCAGAGTTCTATGAATCGTGAGAATTTCTAAAGAGAAAATTTTCTTTTTCTTGAACACATGAACTCAAATGGGAAAACATGGAAATGAGAAATGAAGAAGAAAAAAAACTAATATTTGTATTCTGAATCCGTTACGTTCTCTGGAAAAGGGTAAAAACACAATTTGTGTGTTTGTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATCTCATAGCCTTAGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAACCCAAAAGCGATTATCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGAAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTT</canonical_amplicon>
		<polymorphic_amplicon>GGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGAAAAATACTTCGAAGGTCACCCAAAAAATTGAAYAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20150</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>139245</contig_pos>
        <strand>+</strand>
        <context>AAAATTTRRG[A/G]AAARTACTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAG</left_flank>
        <right_flank>AAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGAGAACTGTGTCTTGTCAGTGAATAAATTACAGACAAAAAATCGTGTCCCGGCCCGGGCCCACGCGGCAAGGGCCAGCCACTTTATGACTTTTAACTTTGTTCGCAAGCAAGGTACAGTTCTCCAAATAGTATCATTTTGTAGTACTCGTCGAGCTCTATTATATTTGATTTAGTTGGTCTAAAAATTTTGATTCTGAAAGAAATAATGGCAATGCCCGCGAAGGCCCGGATTACAAGTATCTGTGAATGCAAATTTCTCCATCTAAGTCTGTTTTACACTCTCCAAAATTTTGTTACCGATCGGAAGCTTGACAACCGAGCTTCAGATTCTTGAAAATGGTAATAATGGTCTAATATCAACTGAGAGTTACGTTTCTATTCATCTTATTGATCGGTACAGTAGACACGCAGGTTCGAAAAAGTTGAAATAACAAAATCAAATTGGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGAAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTTCTTTGTTGTCTACTGGGACCAAAAAGGAAGAGGGTTTACATACAAAGTTATCAGAGGCCCCGAGTCTAAACGTACATAATTACACTCTTCTAGTCGTTTTCCTTTTTTTTCCTTTTTCTTTTCTCGCTTTGTTGTTTTTTTATTCTCTTTTTAGCTCTCTTCAGAGTTCTATGAATCGTGAGAATTTCTAAAGAGAAAATTTTCTTTTTCTTGAACACATGAACTCAAATGGGAAAACATGGAAATGAGAAATGAAGAAGAAAAAAAACTAATATTTGTATTCTGAATCCGTTACGTTCTCTGGAA</canonical>
            <polymorphic>TTGGAGAACTGTGTCTTGTCAGTGAATAAATTACAGACAAAAAATCGTGTCCCGGCCCGGGCCCACGCGGCAAGGGCCAGCCACTTTATGACTTTTAACTTTGTTCGCAAGCAAGGTACAGTTCTCCAAATAGTATCATTTTGTAGTACTCGTCGAGCTCTATTATATTTGATTTAGTTGGTCTAAAAATTTTGATTCTGAAAGAAATAATGGCAATGCCCGCGAAGGCCCGGATTACAAGTATCTGTGAATGCAAATTTCTCCATCTAAGTCTGTTTTACACTCTCCAAAATTTTGTTACCGATCGGAAGCTTGACAACCGAGCTTCAGATTCTTGAAAATGGTAATAATGGTCTAATATCAACTGAGAGTTACGTTTCTATTCATCTTATTGATCGGTACAGTAGACACGCAGGTTCGAAAAAGTTGAAATAACAAAATCAAATTGGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGRAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTTCTTTGTTGTCTACTGGGACCAAAAAGGAAGAGGGTTTACATACAAAGTTATCAGAGGCCCCGAGTCTAAACGTACATAATTACACTCTTCTAGTCGTTTTCCTTTTTTTTCCTTTTTCTTTTCTCGCTTTGTTGTTTTTTTATTCTCTTTTTAGCTCTCTTCAGAGTTCTATGAATCGTGAGAATTTCTAAAGAGAAAATTTTCTTTTTCTTGAACACATGAACTCAAATGGGAAAACATGGAAATGAGAAATGAAGAAGAAAAAAAACTAATATTTGTATTCTGAATCCGTTACGTTCTCTGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATCTCATAGCCTTAGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAACCCAAAAGCGATTATCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGAAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTT</canonical_amplicon>
		<polymorphic_amplicon>GGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGRAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20151</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>139243</contig_pos>
        <strand></strand>
        <context>AAAAAATTTR[A/G]GRAAARTACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTA</left_flank>
        <right_flank>GAAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTGGAGAACTGTGTCTTGTCAGTGAATAAATTACAGACAAAAAATCGTGTCCCGGCCCGGGCCCACGCGGCAAGGGCCAGCCACTTTATGACTTTTAACTTTGTTCGCAAGCAAGGTACAGTTCTCCAAATAGTATCATTTTGTAGTACTCGTCGAGCTCTATTATATTTGATTTAGTTGGTCTAAAAATTTTGATTCTGAAAGAAATAATGGCAATGCCCGCGAAGGCCCGGATTACAAGTATCTGTGAATGCAAATTTCTCCATCTAAGTCTGTTTTACACTCTCCAAAATTTTGTTACCGATCGGAAGCTTGACAACCGAGCTTCAGATTCTTGAAAATGGTAATAATGGTCTAATATCAACTGAGAGTTACGTTTCTATTCATCTTATTGATCGGTACAGTAGACACGCAGGTTCGAAAAAGTTGAAATAACAAAATCAAATTGGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGAAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTTCTTTGTTGTCTACTGGGACCAAAAAGGAAGAGGGTTTACATACAAAGTTATCAGAGGCCCCGAGTCTAAACGTACATAATTACACTCTTCTAGTCGTTTTCCTTTTTTTTCCTTTTTCTTTTCTCGCTTTGTTGTTTTTTTATTCTCTTTTTAGCTCTCTTCAGAGTTCTATGAATCGTGAGAATTTCTAAAGAGAAAATTTTCTTTTTCTTGAACACATGAACTCAAATGGGAAAACATGGAAATGAGAAATGAAGAAGAAAAAAAACTAATATTTGTATTCTGAATCCGTTACGTTCTCTGG</canonical>
            <polymorphic>ATTTGGAGAACTGTGTCTTGTCAGTGAATAAATTACAGACAAAAAATCGTGTCCCGGCCCGGGCCCACGCGGCAAGGGCCAGCCACTTTATGACTTTTAACTTTGTTCGCAAGCAAGGTACAGTTCTCCAAATAGTATCATTTTGTAGTACTCGTCGAGCTCTATTATATTTGATTTAGTTGGTCTAAAAATTTTGATTCTGAAAGAAATAATGGCAATGCCCGCGAAGGCCCGGATTACAAGTATCTGTGAATGCAAATTTCTCCATCTAAGTCTGTTTTACACTCTCCAAAATTTTGTTACCGATCGGAAGCTTGACAACCGAGCTTCAGATTCTTGAAAATGGTAATAATGGTCTAATATCAACTGAGAGTTACGTTTCTATTCATCTTATTGATCGGTACAGTAGACACGCAGGTTCGAAAAAGTTGAAATAACAAAATCAAATTGGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTARGAAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTTCTTTGTTGTCTACTGGGACCAAAAAGGAAGAGGGTTTACATACAAAGTTATCAGAGGCCCCGAGTCTAAACGTACATAATTACACTCTTCTAGTCGTTTTCCTTTTTTTTCCTTTTTCTTTTCTCGCTTTGTTGTTTTTTTATTCTCTTTTTAGCTCTCTTCAGAGTTCTATGAATCGTGAGAATTTCTAAAGAGAAAATTTTCTTTTTCTTGAACACATGAACTCAAATGGGAAAACATGGAAATGAGAAATGAAGAAGAAAAAAAACTAATATTTGTATTCTGAATCCGTTACGTTCTCTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>410 400 97 93</canonical_bands>
                <polymorphic_bands>493 410 97</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGGATCTCATAGCCTTAGAA</pcr_primer_p1>
		<pcr_primer_p2>AAACCCAAAAGCGATTATCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTGGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGAAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTGGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTARGAAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20152</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>139242</contig_pos>
        <strand></strand>
        <context>AAAAAAATTT[A/G]RGRAAARTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTT</left_flank>
        <right_flank>AGAAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTGGAGAACTGTGTCTTGTCAGTGAATAAATTACAGACAAAAAATCGTGTCCCGGCCCGGGCCCACGCGGCAAGGGCCAGCCACTTTATGACTTTTAACTTTGTTCGCAAGCAAGGTACAGTTCTCCAAATAGTATCATTTTGTAGTACTCGTCGAGCTCTATTATATTTGATTTAGTTGGTCTAAAAATTTTGATTCTGAAAGAAATAATGGCAATGCCCGCGAAGGCCCGGATTACAAGTATCTGTGAATGCAAATTTCTCCATCTAAGTCTGTTTTACACTCTCCAAAATTTTGTTACCGATCGGAAGCTTGACAACCGAGCTTCAGATTCTTGAAAATGGTAATAATGGTCTAATATCAACTGAGAGTTACGTTTCTATTCATCTTATTGATCGGTACAGTAGACACGCAGGTTCGAAAAAGTTGAAATAACAAAATCAAATTGGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGAAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTTCTTTGTTGTCTACTGGGACCAAAAAGGAAGAGGGTTTACATACAAAGTTATCAGAGGCCCCGAGTCTAAACGTACATAATTACACTCTTCTAGTCGTTTTCCTTTTTTTTCCTTTTTCTTTTCTCGCTTTGTTGTTTTTTTATTCTCTTTTTAGCTCTCTTCAGAGTTCTATGAATCGTGAGAATTTCTAAAGAGAAAATTTTCTTTTTCTTGAACACATGAACTCAAATGGGAAAACATGGAAATGAGAAATGAAGAAGAAAAAAAACTAATATTTGTATTCTGAATCCGTTACGTTCTCTG</canonical>
            <polymorphic>TATTTGGAGAACTGTGTCTTGTCAGTGAATAAATTACAGACAAAAAATCGTGTCCCGGCCCGGGCCCACGCGGCAAGGGCCAGCCACTTTATGACTTTTAACTTTGTTCGCAAGCAAGGTACAGTTCTCCAAATAGTATCATTTTGTAGTACTCGTCGAGCTCTATTATATTTGATTTAGTTGGTCTAAAAATTTTGATTCTGAAAGAAATAATGGCAATGCCCGCGAAGGCCCGGATTACAAGTATCTGTGAATGCAAATTTCTCCATCTAAGTCTGTTTTACACTCTCCAAAATTTTGTTACCGATCGGAAGCTTGACAACCGAGCTTCAGATTCTTGAAAATGGTAATAATGGTCTAATATCAACTGAGAGTTACGTTTCTATTCATCTTATTGATCGGTACAGTAGACACGCAGGTTCGAAAAAGTTGAAATAACAAAATCAAATTGGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTRAGAAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTTCTTTGTTGTCTACTGGGACCAAAAAGGAAGAGGGTTTACATACAAAGTTATCAGAGGCCCCGAGTCTAAACGTACATAATTACACTCTTCTAGTCGTTTTCCTTTTTTTTCCTTTTTCTTTTCTCGCTTTGTTGTTTTTTTATTCTCTTTTTAGCTCTCTTCAGAGTTCTATGAATCGTGAGAATTTCTAAAGAGAAAATTTTCTTTTTCTTGAACACATGAACTCAAATGGGAAAACATGGAAATGAGAAATGAAGAAGAAAAAAAACTAATATTTGTATTCTGAATCCGTTACGTTCTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>409 400 98 93</canonical_bands>
                <polymorphic_bands>493 409 98</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGGATCTCATAGCCTTAGAA</pcr_primer_p1>
		<pcr_primer_p2>AAACCCAAAAGCGATTATCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTGGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGAAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTGGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTRAGAAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20153</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>223127</contig_pos>
        <strand></strand>
        <context>GRAAAAAAAA[G/A]GTCGTTATGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGAGAATTCCCTGAAGCGGCAAGAACCGAGGCACGTGCTGGAAAAAAAAA</left_flank>
        <right_flank>GTCGTTATGGGTAATAAAAATACGTATAAATACAAATCCGCTTACGTTGC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGAACTTAATTATACCGGGTACAAAAAAAGACAGAAAAGATTGGTAGGACTTTTCTCAAGACCTAAAGCTCTAATCTACAGAAAATATCGAGTGGGGAATAACACCAATATGGCGTTATTGAGGTTTGGGAGATTTCGAAAAAGAAAAGAAAATATATACAATTCGGGGATTCTTATAAATTAGAAAAAAAATCAGACAACATATCGATCCTTTGTCAGATGCCTCTCTAGCGTACGCTCCTCCTGTGGTGTCAAATCCAAAATCCTTCCGATATTATAGATATTGGCCAACTGGTTGTGACGATCATTGCTGAAACCTCTTAAGGTTCATTTTTGGTTTCGAAATTCTAAACAAAACACTCTTACCTCATGATAAAGTTGAATAGAGCTTCTTTGGATTCAGCGTCCAATCCCTGTTGGAAGGATTCTGAACTACTTCCGGCGCTTGGAGAATTCCCTGAAGCGGCAAGAACCGAGGCACGTGCTGGAAAAAAAAAGGTCGTTATGGGTAATAAAAATACGTATAAATACAAATCCGCTTACGTTGCATTTTGCGACTGGTCATAACGGATCCGGTCGGCGACTTTCGATGACTGTTGATGATCTGATTTTGCTTACAAATAAGCATATCTCTCTCCCGCAGCTCGTTCTCAAGGTGGAGAACTTTTCTATCGAACTGAAAGTCTTTTTTTAGTTTGTATAGGACTTTTCATGTCTTACGGTATCTGCCAGTTTTGCCATACTCGTCTGATTCAAGATCAGTTTTTGTTTGTTCAACTCGCGCTGCAAATCCTCAATCTCCATGGACATCTGAGCCTCTCTGGATAGGAATCGGTCACGTTCCATGTTTTTCATCTTGAGCACTGTGACTTCTTCAATCGCCTTATCTCGGAGTTTAGTCACATCACTCAGTTTCTTAGTGATGGTATCCAACTCCTCTCTGAGAAAAAACGATATAACCTATGAGCAAGAGAAGAGCTAAGATATACAAAAGCGTA</canonical>
            <polymorphic>ATAGAACTTAATTATACCGGGTACAAAAAAAGACAGAAAAGATTGGTAGGACTTTTCTCAAGACCTAAAGCTCTAATCTACAGAAAATATCGAGTGGGGAATAACACCAATATGGCGTTATTGAGGTTTGGGAGATTTCGAAAAAGAAAAGAAAATATATACAATTCGGGGATTCTTATAAATTAGAAAAAAAATCAGACAACATATCGATCCTTTGTCAGATGCCTCTCTAGCGTACGCTCCTCCTGTGGTGTCAAATCCAAAATCCTTCCGATATTATAGATATTGGCCAACTGGTTGTGACGATCATTGCTGAAACCTCTTAAGGTTCATTTTTGGTTTCGAAATTCTAAACAAAACACTCTTACCTCATGATAAAGTTGAATAGAGCTTCTTTGGATTCAGCGTCCAATCCCTGTTGGAAGGATTCTGAACTACTTCCGGCGCTTGGAGAATTCCCTGAAGCGGCAAGAACCGAGGCACGTGCTGGAAAAAAAAARGTCGTTATGGGTAATAAAAATACGTATAAATACAAATCCGCTTACGTTGCATTTTGCGACTGGTCATAACGGATCCGGTCGGCGACTTTCGATGACTGTTGATGATCTGATTTTGCTTACAAATAAGCATATCTCTCTCCCGCAGCTCGTTCTCAAGGTGGAGAACTTTTCTATCGAACTGAAAGTCTTTTTTTAGTTTGTATAGGACTTTTCATGTCTTACGGTATCTGCCAGTTTTGCCATACTCGTCTGATTCAAGATCAGTTTTTGTTTGTTCAACTCGCGCTGCAAATCCTCAATCTCCATGGACATCTGAGCCTCTCTGGATAGGAATCGGTCACGTTCCATGTTTTTCATCTTGAGCACTGTGACTTCTTCAATCGCCTTATCTCGGAGTTTAGTCACATCACTCAGTTTCTTAGTGATGGTATCCAACTCCTCTCTGAGAAAAAACGATATAACCTATGAGCAAGAGAAGAGCTAAGATATACAAAAGCGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATAGAGCTTCTTTGGATTC</pcr_primer_p1>
		<pcr_primer_p2>ATGCTTATTTGTAAGCAAAATCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAATAGAGCTTCTTTGGATTCAGCGTCCAATCCCTGTTGGAAGGATTCTGAACTACTTCCGGCGCTTGGAGAATTCCCTGAAGCGGCAAGAACCGAGGCACGTGCTGGAAAAAAAAAGGTCGTTATGGGTAATAAAAATACGTATAAATACAAATCCGCTTACGTTGCATTTTGCGACTGGTCATAACGGATCCGGTCGGCGACTTTCGATGACTGTTGATGATCTGATTTTGCTTACAAATAAGCAT</canonical_amplicon>
		<polymorphic_amplicon>TGAATAGAGCTTCTTTGGATTCAGCGTCCAATCCCTGTTGGAAGGATTCTGAACTACTTCCGGCGCTTGGAGAATTCCCTGAAGCGGCAAGAACCGAGGCACGTGCTGGAAAAAAAAARGTCGTTATGGGTAATAAAAATACGTATAAATACAAATCCGCTTACGTTGCATTTTGCGACTGGTCATAACGGATCCGGTCGGCGACTTTCGATGACTGTTGATGATCTGATTTTGCTTACAAATAAGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20154</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>225100</contig_pos>
        <strand>+</strand>
        <context>CTGACACCAT[A/G]CAGATATCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTCACTGAGAATAGAAGGTCAAAAGTTTTTGAACTACCACTGACACCAT</left_flank>
        <right_flank>CAGATATCAACATGGTTACATAACGACACTGGCAATAGGGCGGGGTATCT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTAATATTTACCCGATGTCAATTTTCAAATTTAACATAAACCATCTGGCGCCCCGCCCCCCGATTGACAAGGGCAGGTGCTCAAAAACAGGTCAAACGGAAAGAAACATATGTTCAATAACGCTTTGAAATTTTGAAAAAAAAAGTGTCGGAGGAGGTGGCGAAACTAATAAACTAATAAAAAATTTATCAGTCAACAGTGGGTGAGTTTCTTATCAGCTGGAAAATTCCTTGAAATAATTTCACCAGCGTTAGCCGACCACGAAAAAAGGAATGCTTCAGAAAACTGTCAATTAGACCTGGAGGATGACATGATAATGATGAGTGGAGGAAAAACAAGAAAATGCGAATAAGGATAAGGAGAACGGAGAACACACCATGATCCGTCTTAGAAAAAAAAATATGCGTCACGGATCATTTGGGGGAGACCAGAGGGTAAAAAAGATAGTTCACTGAGAATAGAAGGTCAAAAGTTTTTGAACTACCACTGACACCATACAGATATCAACATGGTTACATAACGACACTGGCAATAGGGCGGGGTATCTACACCAAACAACTAATTCGAATATTATAACCTACAAAAATGTACATTGCTACTGTTGCGCGGTGGCGGGGTCTCAACATGAGGTAGCAGGCAAAAAAAAGTCATGATGAGAAAATCAAACAATAGCTTCTGCTTCCTTCTCCCCAGGTTTTTTTTGGCTTGTTACAGTTTTCCGCTATGTCAGAAAGGAAAGAAAACCCATTCATCAAACTTATTCAACTTGACGTTTTTATGCGATTTTTTTATTCTTTTCACTTTAGGAAAAAAGTCAAAAAAAAAGAGAGGATAGATGTGACAAAAACAAGAACTTTTTTAGATGTTGGAGAGAATGGCGGGAGGTTTGAAAACCAAAGACTCAAAAATTTGCATAATCGTTGTGTTGGGTGTTCAAGGGGGAAAAGGAAGACAGAAACTACTCGCTTGTCGCGGAACATTGATTGGAAAAAGAAAA</canonical>
            <polymorphic>ATTTTAATATTTACCCGATGTCAATTTTCAAATTTAACATAAACCATCTGGCGCCCCGCCCCCCGATTGACAAGGGCAGGTGCTCAAAAACAGGTCAAACGGAAAGAAACATATGTTCAATAACGCTTTGAAATTTTGAAAAAAAAAGTGTCGGAGGAGGTGGCGAAACTAATAAACTAATAAAAAATTTATCAGTCAACAGTGGGTGAGTTTCTTATCAGCTGGAAAATTCCTTGAAATAATTTCACCAGCGTTAGCCGACCACGAAAAAAGGAATGCTTCAGAAAACTGTCAATTAGACCTGGAGGATGACATGATAATGATGAGTGGAGGAAAAACAAGAAAATGCGAATAAGGATAAGGAGAACGGAGAACACACCATGATCCGTCTTAGAAAAAAAAATATGCGTCACGGATCATTTGGGGGAGACCAGAGGGTAAAAAAGATAGTTCACTGAGAATAGAAGGTCAAAAGTTTTTGAACTACCACTGACACCATRCAGATATCAACATGGTTACATAACGACACTGGCAATAGGGCGGGGTATCTACACCAAACAACTAATTCGAATATTATAACCTACAAAAATGTACATTGCTACTGTTGCGCGGTGGCGGGGTCTCAACATGAGGTAGCAGGCAAAAAAAAGTCATGATGAGAAAATCAAACAATAGCTTCTGCTTCCTTCTCCCCAGGTTTTTTTTGGCTTGTTACAGTTTTCCGCTATGTCAGAAAGGAAAGAAAACCCATTCATCAAACTTATTCAACTTGACGTTTTTATGCGATTTTTTTATTCTTTTCACTTTAGGAAAAAAGTCAAAAAAAAAGAGAGGATAGATGTGACAAAAACAAGAACTTTTTTAGATGTTGGAGAGAATGGCGGGAGGTTTGAAAACCAAAGACTCAAAAATTTGCATAATCGTTGTGTTGGGTGTTCAAGGGGGAAAAGGAAGACAGAAACTACTCGCTTGTCGCGGAACATTGATTGGAAAAAGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGGAGGAAAAACAAGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TATTCGAATTAGTTGTTTGGTGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGTGGAGGAAAAACAAGAAAATGCGAATAAGGATAAGGAGAACGGAGAACACACCATGATCCGTCTTAGAAAAAAAAATATGCGTCACGGATCATTTGGGGGAGACCAGAGGGTAAAAAAGATAGTTCACTGAGAATAGAAGGTCAAAAGTTTTTGAACTACCACTGACACCATACAGATATCAACATGGTTACATAACGACACTGGCAATAGGGCGGGGTATCTACACCAAACAACTAATTCGAATA</canonical_amplicon>
		<polymorphic_amplicon>AGTGGAGGAAAAACAAGAAAATGCGAATAAGGATAAGGAGAACGGAGAACACACCATGATCCGTCTTAGAAAAAAAAATATGCGTCACGGATCATTTGGGGGAGACCAGAGGGTAAAAAAGATAGTTCACTGAGAATAGAAGGTCAAAAGTTTTTGAACTACCACTGACACCATRCAGATATCAACATGGTTACATAACGACACTGGCAATAGGGCGGGGTATCTACACCAAACAACTAATTCGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20155</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>240643</contig_pos>
        <strand>+</strand>
        <context>GGGTAGGAAA[A/G]ATATCGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAA</left_flank>
        <right_flank>ATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAACTATGGAGTATTAGGCTGGGACAAAAAGGGAGAGAAGGAACAAATGAGACTGATAAACGGGGAAAAGGCAGGGAGAGAGACATCTGATAAGAAGAAGACTGAGAGCGCGTGGAAATGATACATCATAGTACATGAAGTTTAAGAAATTGACCGCACTAATGAGTAGGAATTTGAAAAAAAAAAGAAAAAAAAAGAATAAAGTGCAACTTCTCTAGAACAATGGGTATCTGTTTCAAACCAGATAGATCAAATTACTCACTTTTTTGTTTCCAAATTTGAAAAAACATAAATTGAAAAAGAACAAAAAATGAGACAAGAAAAAAAATAATGCATTTTCAATGCACTTTTTGTCTTCAGTCTACAGAACACTGTTCAAAAATCAAATGTATATAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTT</canonical>
            <polymorphic>CAAAACTATGGAGTATTAGGCTGGGACAAAAAGGGAGAGAAGGAACAAATGAGACTGATAAACGGGGAAAAGGCAGGGAGAGAGACATCTGATAAGAAGAAGACTGAGAGCGCGTGGAAATGATACATCATAGTACATGAAGTTTAAGAAATTGACCGCACTAATGAGTAGGAATTTGAAAAAAAAAAGAAAAAAAAAGAATAAAGTGCAACTTCTCTAGAACAATGGGTATCTGTTTCAAACCAGATAGATCAAATTACTCACTTTTTTGTTTCCAAATTTGAAAAAACATAAATTGAAAAAGAACAAAAAATGAGACAAGAAAAAAAATAATGCATTTTCAATGCACTTTTTGTCTTCAGTCTACAGAACACTGTTCAAAAATCAAATGTATATAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAARATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACACTGTTCAAAAATCAAATGTA</pcr_primer_p1>
		<pcr_primer_p2>GTATTTCTTTGTGGAAAGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AACACTGTTCAAAAATCAAATGTATATAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATAC</canonical_amplicon>
		<polymorphic_amplicon>AACACTGTTCAAAAATCAAATGTATATAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAARATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20156</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>240696</contig_pos>
        <strand>+</strand>
        <context>GCTTTTGTGA[A/G]AATRGGAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGA</left_flank>
        <right_flank>AATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGATAAACGGGGAAAAGGCAGGGAGAGAGACATCTGATAAGAAGAAGACTGAGAGCGCGTGGAAATGATACATCATAGTACATGAAGTTTAAGAAATTGACCGCACTAATGAGTAGGAATTTGAAAAAAAAAAGAAAAAAAAAGAATAAAGTGCAACTTCTCTAGAACAATGGGTATCTGTTTCAAACCAGATAGATCAAATTACTCACTTTTTTGTTTCCAAATTTGAAAAAACATAAATTGAAAAAGAACAAAAAATGAGACAAGAAAAAAAATAATGCATTTTCAATGCACTTTTTGTCTTCAGTCTACAGAACACTGTTCAAAAATCAAATGTATATAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATA</canonical>
            <polymorphic>ACTGATAAACGGGGAAAAGGCAGGGAGAGAGACATCTGATAAGAAGAAGACTGAGAGCGCGTGGAAATGATACATCATAGTACATGAAGTTTAAGAAATTGACCGCACTAATGAGTAGGAATTTGAAAAAAAAAAGAAAAAAAAAGAATAAAGTGCAACTTCTCTAGAACAATGGGTATCTGTTTCAAACCAGATAGATCAAATTACTCACTTTTTTGTTTCCAAATTTGAAAAAACATAAATTGAAAAAGAACAAAAAATGAGACAAGAAAAAAAATAATGCATTTTCAATGCACTTTTTGTCTTCAGTCTACAGAACACTGTTCAAAAATCAAATGTATATAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGARAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACACTGTTCAAAAATCAAATGTA</pcr_primer_p1>
		<pcr_primer_p2>GTATTTCTTTGTGGAAAGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AACACTGTTCAAAAATCAAATGTATATAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATAC</canonical_amplicon>
		<polymorphic_amplicon>AACACTGTTCAAAAATCAAATGTATATAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGARAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20157</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>240700</contig_pos>
        <strand>+</strand>
        <context>TTGTGARAAT[A/G]GGAATTTCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAAT</left_flank>
        <right_flank>GGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAACGGGGAAAAGGCAGGGAGAGAGACATCTGATAAGAAGAAGACTGAGAGCGCGTGGAAATGATACATCATAGTACATGAAGTTTAAGAAATTGACCGCACTAATGAGTAGGAATTTGAAAAAAAAAAGAAAAAAAAAGAATAAAGTGCAACTTCTCTAGAACAATGGGTATCTGTTTCAAACCAGATAGATCAAATTACTCACTTTTTTGTTTCCAAATTTGAAAAAACATAAATTGAAAAAGAACAAAAAATGAGACAAGAAAAAAAATAATGCATTTTCAATGCACTTTTTGTCTTCAGTCTACAGAACACTGTTCAAAAATCAAATGTATATAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAA</canonical>
            <polymorphic>ATAAACGGGGAAAAGGCAGGGAGAGAGACATCTGATAAGAAGAAGACTGAGAGCGCGTGGAAATGATACATCATAGTACATGAAGTTTAAGAAATTGACCGCACTAATGAGTAGGAATTTGAAAAAAAAAAGAAAAAAAAAGAATAAAGTGCAACTTCTCTAGAACAATGGGTATCTGTTTCAAACCAGATAGATCAAATTACTCACTTTTTTGTTTCCAAATTTGAAAAAACATAAATTGAAAAAGAACAAAAAATGAGACAAGAAAAAAAATAATGCATTTTCAATGCACTTTTTGTCTTCAGTCTACAGAACACTGTTCAAAAATCAAATGTATATAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATRGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACACTGTTCAAAAATCAAATGTA</pcr_primer_p1>
		<pcr_primer_p2>GTATTTCTTTGTGGAAAGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AACACTGTTCAAAAATCAAATGTATATAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATAC</canonical_amplicon>
		<polymorphic_amplicon>AACACTGTTCAAAAATCAAATGTATATAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATRGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20158</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>240716</contig_pos>
        <strand>+</strand>
        <context>TTCTCAAAGG[A/G]CYTAAAACGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGG</left_flank>
        <right_flank>CCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGGGAGAGAGACATCTGATAAGAAGAAGACTGAGAGCGCGTGGAAATGATACATCATAGTACATGAAGTTTAAGAAATTGACCGCACTAATGAGTAGGAATTTGAAAAAAAAAAGAAAAAAAAAGAATAAAGTGCAACTTCTCTAGAACAATGGGTATCTGTTTCAAACCAGATAGATCAAATTACTCACTTTTTTGTTTCCAAATTTGAAAAAACATAAATTGAAAAAGAACAAAAAATGAGACAAGAAAAAAAATAATGCATTTTCAATGCACTTTTTGTCTTCAGTCTACAGAACACTGTTCAAAAATCAAATGTATATAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCT</canonical>
            <polymorphic>CAGGGAGAGAGACATCTGATAAGAAGAAGACTGAGAGCGCGTGGAAATGATACATCATAGTACATGAAGTTTAAGAAATTGACCGCACTAATGAGTAGGAATTTGAAAAAAAAAAGAAAAAAAAAGAATAAAGTGCAACTTCTCTAGAACAATGGGTATCTGTTTCAAACCAGATAGATCAAATTACTCACTTTTTTGTTTCCAAATTTGAAAAAACATAAATTGAAAAAGAACAAAAAATGAGACAAGAAAAAAAATAATGCATTTTCAATGCACTTTTTGTCTTCAGTCTACAGAACACTGTTCAAAAATCAAATGTATATAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGRCCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AGGWCCT</site>
                <isoschizomers>
                    <enzyme>Sse8647I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGATCATAAGGCAATTC</pcr_primer_p1>
		<pcr_primer_p2>ATTCCAACAAAACACACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGRCCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20159</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>240718</contig_pos>
        <strand>+</strand>
        <context>CTCAAAGGRC[C/T]TAAAACGTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGAC</left_flank>
        <right_flank>TAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGAGAGAGACATCTGATAAGAAGAAGACTGAGAGCGCGTGGAAATGATACATCATAGTACATGAAGTTTAAGAAATTGACCGCACTAATGAGTAGGAATTTGAAAAAAAAAAGAAAAAAAAAGAATAAAGTGCAACTTCTCTAGAACAATGGGTATCTGTTTCAAACCAGATAGATCAAATTACTCACTTTTTTGTTTCCAAATTTGAAAAAACATAAATTGAAAAAGAACAAAAAATGAGACAAGAAAAAAAATAATGCATTTTCAATGCACTTTTTGTCTTCAGTCTACAGAACACTGTTCAAAAATCAAATGTATATAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTT</canonical>
            <polymorphic>GGGAGAGAGACATCTGATAAGAAGAAGACTGAGAGCGCGTGGAAATGATACATCATAGTACATGAAGTTTAAGAAATTGACCGCACTAATGAGTAGGAATTTGAAAAAAAAAAGAAAAAAAAAGAATAAAGTGCAACTTCTCTAGAACAATGGGTATCTGTTTCAAACCAGATAGATCAAATTACTCACTTTTTTGTTTCCAAATTTGAAAAAACATAAATTGAAAAAGAACAAAAAATGAGACAAGAAAAAAAATAATGCATTTTCAATGCACTTTTTGTCTTCAGTCTACAGAACACTGTTCAAAAATCAAATGTATATAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACYTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>504 365 131</canonical_bands>
                <polymorphic_bands>635 365</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>504 365 131</canonical_bands>
                <polymorphic_bands>635 365</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AGGWCCT</site>
                <isoschizomers>
                    <enzyme>Sse8647I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGATCATAAGGCAATTC</pcr_primer_p1>
		<pcr_primer_p2>ATTCCAACAAAACACACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACYTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20160</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>240729</contig_pos>
        <strand>+</strand>
        <context>TAAAACGTTA[A/G]RAATTCCAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTA</left_flank>
        <right_flank>GAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTGATAAGAAGAAGACTGAGAGCGCGTGGAAATGATACATCATAGTACATGAAGTTTAAGAAATTGACCGCACTAATGAGTAGGAATTTGAAAAAAAAAAGAAAAAAAAAGAATAAAGTGCAACTTCTCTAGAACAATGGGTATCTGTTTCAAACCAGATAGATCAAATTACTCACTTTTTTGTTTCCAAATTTGAAAAAACATAAATTGAAAAAGAACAAAAAATGAGACAAGAAAAAAAATAATGCATTTTCAATGCACTTTTTGTCTTCAGTCTACAGAACACTGTTCAAAAATCAAATGTATATAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCC</canonical>
            <polymorphic>ATCTGATAAGAAGAAGACTGAGAGCGCGTGGAAATGATACATCATAGTACATGAAGTTTAAGAAATTGACCGCACTAATGAGTAGGAATTTGAAAAAAAAAAGAAAAAAAAAGAATAAAGTGCAACTTCTCTAGAACAATGGGTATCTGTTTCAAACCAGATAGATCAAATTACTCACTTTTTTGTTTCCAAATTTGAAAAAACATAAATTGAAAAAGAACAAAAAATGAGACAAGAAAAAAAATAATGCATTTTCAATGCACTTTTTGTCTTCAGTCTACAGAACACTGTTCAAAAATCAAATGTATATAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTARGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGATCATAAGGCAATTC</pcr_primer_p1>
		<pcr_primer_p2>ATTCCAACAAAACACACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTARGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20161</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>240730</contig_pos>
        <strand>+</strand>
        <context>AAAACGTTAR[A/G]AATTCCAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAG</left_flank>
        <right_flank>AATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGATAAGAAGAAGACTGAGAGCGCGTGGAAATGATACATCATAGTACATGAAGTTTAAGAAATTGACCGCACTAATGAGTAGGAATTTGAAAAAAAAAAGAAAAAAAAAGAATAAAGTGCAACTTCTCTAGAACAATGGGTATCTGTTTCAAACCAGATAGATCAAATTACTCACTTTTTTGTTTCCAAATTTGAAAAAACATAAATTGAAAAAGAACAAAAAATGAGACAAGAAAAAAAATAATGCATTTTCAATGCACTTTTTGTCTTCAGTCTACAGAACACTGTTCAAAAATCAAATGTATATAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCA</canonical>
            <polymorphic>TCTGATAAGAAGAAGACTGAGAGCGCGTGGAAATGATACATCATAGTACATGAAGTTTAAGAAATTGACCGCACTAATGAGTAGGAATTTGAAAAAAAAAAGAAAAAAAAAGAATAAAGTGCAACTTCTCTAGAACAATGGGTATCTGTTTCAAACCAGATAGATCAAATTACTCACTTTTTTGTTTCCAAATTTGAAAAAACATAAATTGAAAAAGAACAAAAAATGAGACAAGAAAAAAAATAATGCATTTTCAATGCACTTTTTGTCTTCAGTCTACAGAACACTGTTCAAAAATCAAATGTATATAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGRAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>282 111 105 98 85 73 67 60 44 28 26 21</canonical_bands>
                <polymorphic_bands>282 111 105 98 88 85 73 67 44 26 21</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGATCATAAGGCAATTC</pcr_primer_p1>
		<pcr_primer_p2>ATTCCAACAAAACACACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGRAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20162</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>240772</contig_pos>
        <strand>+</strand>
        <context>TAATTTTTCT[A/T]GAAGTAATCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCT</left_flank>
        <right_flank>GAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGTACATGAAGTTTAAGAAATTGACCGCACTAATGAGTAGGAATTTGAAAAAAAAAAGAAAAAAAAAGAATAAAGTGCAACTTCTCTAGAACAATGGGTATCTGTTTCAAACCAGATAGATCAAATTACTCACTTTTTTGTTTCCAAATTTGAAAAAACATAAATTGAAAAAGAACAAAAAATGAGACAAGAAAAAAAATAATGCATTTTCAATGCACTTTTTGTCTTCAGTCTACAGAACACTGTTCAAAAATCAAATGTATATAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCACCAAAACTTCCAACTTCGAGCTCAATTATCTCGTTTCCTGTG</canonical>
            <polymorphic>ATAGTACATGAAGTTTAAGAAATTGACCGCACTAATGAGTAGGAATTTGAAAAAAAAAAGAAAAAAAAAGAATAAAGTGCAACTTCTCTAGAACAATGGGTATCTGTTTCAAACCAGATAGATCAAATTACTCACTTTTTTGTTTCCAAATTTGAAAAAACATAAATTGAAAAAGAACAAAAAATGAGACAAGAAAAAAAATAATGCATTTTCAATGCACTTTTTGTCTTCAGTCTACAGAACACTGTTCAAAAATCAAATGTATATAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTWGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCACCAAAACTTCCAACTTCGAGCTCAATTATCTCGTTTCCTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGATCATAAGGCAATTC</pcr_primer_p1>
		<pcr_primer_p2>ATTCCAACAAAACACACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTWGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20163</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>240824</contig_pos>
        <strand>+</strand>
        <context>AAGCCAGAAA[C/G]CGCTACTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAA</left_flank>
        <right_flank>CGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAAGAAAAAAAAAGAATAAAGTGCAACTTCTCTAGAACAATGGGTATCTGTTTCAAACCAGATAGATCAAATTACTCACTTTTTTGTTTCCAAATTTGAAAAAACATAAATTGAAAAAGAACAAAAAATGAGACAAGAAAAAAAATAATGCATTTTCAATGCACTTTTTGTCTTCAGTCTACAGAACACTGTTCAAAAATCAAATGTATATAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCACCAAAACTTCCAACTTCGAGCTCAATTATCTCGTTTCCTGTGAAAGGTATCAAAAACTTGTCAACTTTTAAATTGTTTGTCATAATATCACCAA</canonical>
            <polymorphic>AAAAAAAGAAAAAAAAAGAATAAAGTGCAACTTCTCTAGAACAATGGGTATCTGTTTCAAACCAGATAGATCAAATTACTCACTTTTTTGTTTCCAAATTTGAAAAAACATAAATTGAAAAAGAACAAAAAATGAGACAAGAAAAAAAATAATGCATTTTCAATGCACTTTTTGTCTTCAGTCTACAGAACACTGTTCAAAAATCAAATGTATATAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAASCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCACCAAAACTTCCAACTTCGAGCTCAATTATCTCGTTTCCTGTGAAAGGTATCAAAAACTTGTCAACTTTTAAATTGTTTGTCATAATATCACCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCGCT</site>
                <isoschizomers>
                    <enzyme>AfeI</enzyme>
                    <enzyme>Aor51HI</enzyme>
                    <enzyme>Eco47III</enzyme>
                    <enzyme>FunI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGATCATAAGGCAATTC</pcr_primer_p1>
		<pcr_primer_p2>ATTCCAACAAAACACACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAASCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20164</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>240907</contig_pos>
        <strand>+</strand>
        <context>ATGGTTCAGT[A/C]TTTTTTGGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGT</left_flank>
        <right_flank>TTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTGTTTCCAAATTTGAAAAAACATAAATTGAAAAAGAACAAAAAATGAGACAAGAAAAAAAATAATGCATTTTCAATGCACTTTTTGTCTTCAGTCTACAGAACACTGTTCAAAAATCAAATGTATATAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCACCAAAACTTCCAACTTCGAGCTCAATTATCTCGTTTCCTGTGAAAGGTATCAAAAACTTGTCAACTTTTAAATTGTTTGTCATAATATCACCAATATTTTATCAGTTTGCAAAATTTTGATTCCGCTCACAGGAATCGAGATAATTGAGTTTGTATAGAGTGGGCTTCTATTGAAGG</canonical>
            <polymorphic>TTTTTTGTTTCCAAATTTGAAAAAACATAAATTGAAAAAGAACAAAAAATGAGACAAGAAAAAAAATAATGCATTTTCAATGCACTTTTTGTCTTCAGTCTACAGAACACTGTTCAAAAATCAAATGTATATAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTMTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCACCAAAACTTCCAACTTCGAGCTCAATTATCTCGTTTCCTGTGAAAGGTATCAAAAACTTGTCAACTTTTAAATTGTTTGTCATAATATCACCAATATTTTATCAGTTTGCAAAATTTTGATTCCGCTCACAGGAATCGAGATAATTGAGTTTGTATAGAGTGGGCTTCTATTGAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTCAGATCTAGTTTTTAAGC</pcr_primer_p1>
		<pcr_primer_p2>GCAATTTGAATTTTGAACCTT</pcr_primer_p2>
		<pcr_amplicon_size>650</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTMTTTTTTGGAATCATATATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20165</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>240920</contig_pos>
        <strand>+</strand>
        <context>TTTTGGAATC[A/G]TATATACCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATC</left_flank>
        <right_flank>TATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTGAAAAAACATAAATTGAAAAAGAACAAAAAATGAGACAAGAAAAAAAATAATGCATTTTCAATGCACTTTTTGTCTTCAGTCTACAGAACACTGTTCAAAAATCAAATGTATATAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCACCAAAACTTCCAACTTCGAGCTCAATTATCTCGTTTCCTGTGAAAGGTATCAAAAACTTGTCAACTTTTAAATTGTTTGTCATAATATCACCAATATTTTATCAGTTTGCAAAATTTTGATTCCGCTCACAGGAATCGAGATAATTGAGTTTGTATAGAGTGGGCTTCTATTGAAGGTATCTTTTTCCGC</canonical>
            <polymorphic>AATTTGAAAAAACATAAATTGAAAAAGAACAAAAAATGAGACAAGAAAAAAAATAATGCATTTTCAATGCACTTTTTGTCTTCAGTCTACAGAACACTGTTCAAAAATCAAATGTATATAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCRTATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCACCAAAACTTCCAACTTCGAGCTCAATTATCTCGTTTCCTGTGAAAGGTATCAAAAACTTGTCAACTTTTAAATTGTTTGTCATAATATCACCAATATTTTATCAGTTTGCAAAATTTTGATTCCGCTCACAGGAATCGAGATAATTGAGTTTGTATAGAGTGGGCTTCTATTGAAGGTATCTTTTTCCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTCAGATCTAGTTTTTAAGC</pcr_primer_p1>
		<pcr_primer_p2>GCAATTTGAATTTTGAACCTT</pcr_primer_p2>
		<pcr_amplicon_size>650</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCRTATATACCTAAATATTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20166</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>240973</contig_pos>
        <strand>+</strand>
        <context>ATTTGAACTT[C/T]TTGCTTTAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTT</left_flank>
        <right_flank>TTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATGCATTTTCAATGCACTTTTTGTCTTCAGTCTACAGAACACTGTTCAAAAATCAAATGTATATAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCACCAAAACTTCCAACTTCGAGCTCAATTATCTCGTTTCCTGTGAAAGGTATCAAAAACTTGTCAACTTTTAAATTGTTTGTCATAATATCACCAATATTTTATCAGTTTGCAAAATTTTGATTCCGCTCACAGGAATCGAGATAATTGAGTTTGTATAGAGTGGGCTTCTATTGAAGGTATCTTTTTCCGCCAAGGTTCAAAATTCAAATTGCAGATTATTGTTGTATTCTCAATTTCTCGTTT</canonical>
            <polymorphic>TAATGCATTTTCAATGCACTTTTTGTCTTCAGTCTACAGAACACTGTTCAAAAATCAAATGTATATAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTYTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCACCAAAACTTCCAACTTCGAGCTCAATTATCTCGTTTCCTGTGAAAGGTATCAAAAACTTGTCAACTTTTAAATTGTTTGTCATAATATCACCAATATTTTATCAGTTTGCAAAATTTTGATTCCGCTCACAGGAATCGAGATAATTGAGTTTGTATAGAGTGGGCTTCTATTGAAGGTATCTTTTTCCGCCAAGGTTCAAAATTCAAATTGCAGATTATTGTTGTATTCTCAATTTCTCGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGTGTGTTTTGTTGGAATC</pcr_primer_p1>
		<pcr_primer_p2>GCAATTTGAATTTTGAACCTT</pcr_primer_p2>
		<pcr_amplicon_size>570</pcr_amplicon_size>
		<canonical_amplicon>AAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCACCAAAACTTCCAACTTCGAGCTCAATTATCTCGTTTCCTGTGAAAGGTATCAAAAACTTGTCAACTTTTAAATTGTTTGTCATAATATCACCAATATTTTATCAGTTTGCAAAATTTTGATTCCGCTCACAGGAATCGAGATAATTGAGTTTGTATAGAGTGGGCTTCTATTGAAGGTATCTTTTTCCGCCAAGGTTCAAAATTCAAATTGC</canonical_amplicon>
		<polymorphic_amplicon>AAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTYTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCACCAAAACTTCCAACTTCGAGCTCAATTATCTCGTTTCCTGTGAAAGGTATCAAAAACTTGTCAACTTTTAAATTGTTTGTCATAATATCACCAATATTTTATCAGTTTGCAAAATTTTGATTCCGCTCACAGGAATCGAGATAATTGAGTTTGTATAGAGTGGGCTTCTATTGAAGGTATCTTTTTCCGCCAAGGTTCAAAATTCAAATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20167</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>240994</contig_pos>
        <strand>+</strand>
        <context>ATTTACTAGG[A/T]ACACCAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGG</left_flank>
        <right_flank>ACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGTCTTCAGTCTACAGAACACTGTTCAAAAATCAAATGTATATAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCACCAAAACTTCCAACTTCGAGCTCAATTATCTCGTTTCCTGTGAAAGGTATCAAAAACTTGTCAACTTTTAAATTGTTTGTCATAATATCACCAATATTTTATCAGTTTGCAAAATTTTGATTCCGCTCACAGGAATCGAGATAATTGAGTTTGTATAGAGTGGGCTTCTATTGAAGGTATCTTTTTCCGCCAAGGTTCAAAATTCAAATTGCAGATTATTGTTGTATTCTCAATTTCTCGTTTTTCACAGACCCAACTTCACAT</canonical>
            <polymorphic>TTTGTCTTCAGTCTACAGAACACTGTTCAAAAATCAAATGTATATAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGWACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCACCAAAACTTCCAACTTCGAGCTCAATTATCTCGTTTCCTGTGAAAGGTATCAAAAACTTGTCAACTTTTAAATTGTTTGTCATAATATCACCAATATTTTATCAGTTTGCAAAATTTTGATTCCGCTCACAGGAATCGAGATAATTGAGTTTGTATAGAGTGGGCTTCTATTGAAGGTATCTTTTTCCGCCAAGGTTCAAAATTCAAATTGCAGATTATTGTTGTATTCTCAATTTCTCGTTTTTCACAGACCCAACTTCACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCATCTTAATTTTGTTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>GCAATTTGAATTTTGAACCTT</pcr_primer_p2>
		<pcr_amplicon_size>503</pcr_amplicon_size>
		<canonical_amplicon>TGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCACCAAAACTTCCAACTTCGAGCTCAATTATCTCGTTTCCTGTGAAAGGTATCAAAAACTTGTCAACTTTTAAATTGTTTGTCATAATATCACCAATATTTTATCAGTTTGCAAAATTTTGATTCCGCTCACAGGAATCGAGATAATTGAGTTTGTATAGAGTGGGCTTCTATTGAAGGTATCTTTTTCCGCCAAGGTTCAAAATTCAAATTGC</canonical_amplicon>
		<polymorphic_amplicon>TGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGWACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCACCAAAACTTCCAACTTCGAGCTCAATTATCTCGTTTCCTGTGAAAGGTATCAAAAACTTGTCAACTTTTAAATTGTTTGTCATAATATCACCAATATTTTATCAGTTTGCAAAATTTTGATTCCGCTCACAGGAATCGAGATAATTGAGTTTGTATAGAGTGGGCTTCTATTGAAGGTATCTTTTTCCGCCAAGGTTCAAAATTCAAATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20168</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>244232</contig_pos>
        <strand>+</strand>
        <context>TGAAARTCTT[A/G]GAAATTTTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCGAGGGAAGGAGGGGGAGGGGAGGACTACAAATTAAATTTGAAAGTCTT</left_flank>
        <right_flank>GAAATTTTGGAATTTGTAGGATTGGGTAGTTGGCCGTTGTAGTCGTCACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTAGACGTTCGAATCGAGATGTGGGTTCAAGAAGTATCATCGGTTTCTGAGCTAACACAGGATTTCGAAATAGGTGTGTTTACAATTTTTGTCTTCTTTTGGCAACAAACAACACCTTCACGCTTTTTTTCCAGACTTGTACATGAACGAATACTGGACGGACCCCGGCCTAGCATACGACATTCTCAATCCGTGTCAGGTAATTTGTCACTCAAATGATCTCCTCCTCAGTTTCCGTGTATAGGGCAATTTATCCTTTGATTGGGCTGTCATGCAAAACATCTGGACGCCCAATACATGCTTCATCAATTCCAAAAAGGCACAGCTTCACAGCTCTCCATTCACCAACGTCTTCTTGATGGTTTTCCCGAATGGTACGTTTTGAAGCGTTGCTCGTTAAGTGTGTAGTGACTTATGCTGATTCGCTTATGCAAAATTTTTGGGTGAAGCGAGGGAAGGAGGGGGAGGGGAGGACTACAAATTAAATTTGAAAGTCTTGGAAATTTTGGAATTTGTAGGATTGGGTAGTTGGCCGTTGTAGTCGTCACAAAGCTTCCTGAAACTTGATGAGAATCGGAAAGCCAACAAAAAAAAAGAAAAAAATTGTGTCGGAAGGAAATGGGGAATGATATAGGATACAGTGTTTCCGTTCTAGCTTCTTCCTGTAGGGTTTTTGTTACAAGCTAGCGAAAAGATCAAGACAAAAGGTAGCACAATGAATAATTGATCACCAGGGAGAACAGAAACAATGAGCGTGAATAATTGTGTAGTAGAGTGTATGTGTGTACTCACCTTTTTCCAGGATCCGTCTGGTCGAATTGGCGCATCAAAAGTACCGGACCGTGTGTCATGGATCTCACCAAATTCCCCATGGACAGTATCGAGTGTTCTTTGACTTTCGAATCATTCAACTACAACAAGGTTGCCATCCAATTATAACCACTTTTCTTTTTTTGTGACTAGTTTTTTTAATTCTCATAGCGAAGTATTTATTTTGAA</canonical>
            <polymorphic>AGTAGACGTTCGAATCGAGATGTGGGTTCAAGAAGTATCATCGGTTTCTGAGCTAACACAGGATTTCGAAATAGGTGTGTTTACAATTTTTGTCTTCTTTTGGCAACAAACAACACCTTCACGCTTTTTTTCCAGACTTGTACATGAACGAATACTGGACGGACCCCGGCCTAGCATACGACATTCTCAATCCGTGTCAGGTAATTTGTCACTCAAATGATCTCCTCCTCAGTTTCCGTGTATAGGGCAATTTATCCTTTGATTGGGCTGTCATGCAAAACATCTGGACGCCCAATACATGCTTCATCAATTCCAAAAAGGCACAGCTTCACAGCTCTCCATTCACCAACGTCTTCTTGATGGTTTTCCCGAATGGTACGTTTTGAAGCGTTGCTCGTTAAGTGTGTAGTGACTTATGCTGATTCGCTTATGCAAAATTTTTGGGTGAAGCGAGGGAAGGAGGGGGAGGGGAGGACTACAAATTAAATTTGAAAGTCTTRGAAATTTTGGAATTTGTAGGATTGGGTAGTTGGCCGTTGTAGTCGTCACAAAGCTTCCTGAAACTTGATGAGAATCGGAAAGCCAACAAAAAAAAAGAAAAAAATTGTGTCGGAAGGAAATGGGGAATGATATAGGATACAGTGTTTCCGTTCTAGCTTCTTCCTGTAGGGTTTTTGTTACAAGCTAGCGAAAAGATCAAGACAAAAGGTAGCACAATGAATAATTGATCACCAGGGAGAACAGAAACAATGAGCGTGAATAATTGTGTAGTAGAGTGTATGTGTGTACTCACCTTTTTCCAGGATCCGTCTGGTCGAATTGGCGCATCAAAAGTACCGGACCGTGTGTCATGGATCTCACCAAATTCCCCATGGACAGTATCGAGTGTTCTTTGACTTTCGAATCATTCAACTACAACAAGGTTGCCATCCAATTATAACCACTTTTCTTTTTTTGTGACTAGTTTTTTTAATTCTCATAGCGAAGTATTTATTTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGCTCGTTAAGTGTGTAGTG</pcr_primer_p1>
		<pcr_primer_p2>TATCCTATATCATTCCCCATTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTGCTCGTTAAGTGTGTAGTGACTTATGCTGATTCGCTTATGCAAAATTTTTGGGTGAAGCGAGGGAAGGAGGGGGAGGGGAGGACTACAAATTAAATTTGAAAGTCTTGGAAATTTTGGAATTTGTAGGATTGGGTAGTTGGCCGTTGTAGTCGTCACAAAGCTTCCTGAAACTTGATGAGAATCGGAAAGCCAACAAAAAAAAAGAAAAAAATTGTGTCGGAAGGAAATGGGGAATGATATAGGATA</canonical_amplicon>
		<polymorphic_amplicon>GTTGCTCGTTAAGTGTGTAGTGACTTATGCTGATTCGCTTATGCAAAATTTTTGGGTGAAGCGAGGGAAGGAGGGGGAGGGGAGGACTACAAATTAAATTTGAAAGTCTTRGAAATTTTGGAATTTGTAGGATTGGGTAGTTGGCCGTTGTAGTCGTCACAAAGCTTCCTGAAACTTGATGAGAATCGGAAAGCCAACAAAAAAAAAGAAAAAAATTGTGTCGGAAGGAAATGGGGAATGATATAGGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20169</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>244227</contig_pos>
        <strand>+</strand>
        <context>AAATTTGAAA[A/G]TCTTRGAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGAAGCGAGGGAAGGAGGGGGAGGGGAGGACTACAAATTAAATTTGAAA</left_flank>
        <right_flank>TCTTGGAAATTTTGGAATTTGTAGGATTGGGTAGTTGGCCGTTGTAGTCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCAAGTAGACGTTCGAATCGAGATGTGGGTTCAAGAAGTATCATCGGTTTCTGAGCTAACACAGGATTTCGAAATAGGTGTGTTTACAATTTTTGTCTTCTTTTGGCAACAAACAACACCTTCACGCTTTTTTTCCAGACTTGTACATGAACGAATACTGGACGGACCCCGGCCTAGCATACGACATTCTCAATCCGTGTCAGGTAATTTGTCACTCAAATGATCTCCTCCTCAGTTTCCGTGTATAGGGCAATTTATCCTTTGATTGGGCTGTCATGCAAAACATCTGGACGCCCAATACATGCTTCATCAATTCCAAAAAGGCACAGCTTCACAGCTCTCCATTCACCAACGTCTTCTTGATGGTTTTCCCGAATGGTACGTTTTGAAGCGTTGCTCGTTAAGTGTGTAGTGACTTATGCTGATTCGCTTATGCAAAATTTTTGGGTGAAGCGAGGGAAGGAGGGGGAGGGGAGGACTACAAATTAAATTTGAAAGTCTTGGAAATTTTGGAATTTGTAGGATTGGGTAGTTGGCCGTTGTAGTCGTCACAAAGCTTCCTGAAACTTGATGAGAATCGGAAAGCCAACAAAAAAAAAGAAAAAAATTGTGTCGGAAGGAAATGGGGAATGATATAGGATACAGTGTTTCCGTTCTAGCTTCTTCCTGTAGGGTTTTTGTTACAAGCTAGCGAAAAGATCAAGACAAAAGGTAGCACAATGAATAATTGATCACCAGGGAGAACAGAAACAATGAGCGTGAATAATTGTGTAGTAGAGTGTATGTGTGTACTCACCTTTTTCCAGGATCCGTCTGGTCGAATTGGCGCATCAAAAGTACCGGACCGTGTGTCATGGATCTCACCAAATTCCCCATGGACAGTATCGAGTGTTCTTTGACTTTCGAATCATTCAACTACAACAAGGTTGCCATCCAATTATAACCACTTTTCTTTTTTTGTGACTAGTTTTTTTAATTCTCATAGCGAAGTATTTATT</canonical>
            <polymorphic>CCTCAAGTAGACGTTCGAATCGAGATGTGGGTTCAAGAAGTATCATCGGTTTCTGAGCTAACACAGGATTTCGAAATAGGTGTGTTTACAATTTTTGTCTTCTTTTGGCAACAAACAACACCTTCACGCTTTTTTTCCAGACTTGTACATGAACGAATACTGGACGGACCCCGGCCTAGCATACGACATTCTCAATCCGTGTCAGGTAATTTGTCACTCAAATGATCTCCTCCTCAGTTTCCGTGTATAGGGCAATTTATCCTTTGATTGGGCTGTCATGCAAAACATCTGGACGCCCAATACATGCTTCATCAATTCCAAAAAGGCACAGCTTCACAGCTCTCCATTCACCAACGTCTTCTTGATGGTTTTCCCGAATGGTACGTTTTGAAGCGTTGCTCGTTAAGTGTGTAGTGACTTATGCTGATTCGCTTATGCAAAATTTTTGGGTGAAGCGAGGGAAGGAGGGGGAGGGGAGGACTACAAATTAAATTTGAAARTCTTGGAAATTTTGGAATTTGTAGGATTGGGTAGTTGGCCGTTGTAGTCGTCACAAAGCTTCCTGAAACTTGATGAGAATCGGAAAGCCAACAAAAAAAAAGAAAAAAATTGTGTCGGAAGGAAATGGGGAATGATATAGGATACAGTGTTTCCGTTCTAGCTTCTTCCTGTAGGGTTTTTGTTACAAGCTAGCGAAAAGATCAAGACAAAAGGTAGCACAATGAATAATTGATCACCAGGGAGAACAGAAACAATGAGCGTGAATAATTGTGTAGTAGAGTGTATGTGTGTACTCACCTTTTTCCAGGATCCGTCTGGTCGAATTGGCGCATCAAAAGTACCGGACCGTGTGTCATGGATCTCACCAAATTCCCCATGGACAGTATCGAGTGTTCTTTGACTTTCGAATCATTCAACTACAACAAGGTTGCCATCCAATTATAACCACTTTTCTTTTTTTGTGACTAGTTTTTTTAATTCTCATAGCGAAGTATTTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGCTCGTTAAGTGTGTAGTG</pcr_primer_p1>
		<pcr_primer_p2>TATCCTATATCATTCCCCATTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTGCTCGTTAAGTGTGTAGTGACTTATGCTGATTCGCTTATGCAAAATTTTTGGGTGAAGCGAGGGAAGGAGGGGGAGGGGAGGACTACAAATTAAATTTGAAAGTCTTGGAAATTTTGGAATTTGTAGGATTGGGTAGTTGGCCGTTGTAGTCGTCACAAAGCTTCCTGAAACTTGATGAGAATCGGAAAGCCAACAAAAAAAAAGAAAAAAATTGTGTCGGAAGGAAATGGGGAATGATATAGGATA</canonical_amplicon>
		<polymorphic_amplicon>GTTGCTCGTTAAGTGTGTAGTGACTTATGCTGATTCGCTTATGCAAAATTTTTGGGTGAAGCGAGGGAAGGAGGGGGAGGGGAGGACTACAAATTAAATTTGAAARTCTTGGAAATTTTGGAATTTGTAGGATTGGGTAGTTGGCCGTTGTAGTCGTCACAAAGCTTCCTGAAACTTGATGAGAATCGGAAAGCCAACAAAAAAAAAGAAAAAAATTGTGTCGGAAGGAAATGGGGAATGATATAGGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20170</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>244191</contig_pos>
        <strand>+</strand>
        <context>AGCGAGGGAA[A/G]GAGGGGGAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGACTTATGCTGATTCGCTTATGCAAAATTTTTGGGTGAAGCGAGGGAA</left_flank>
        <right_flank>GAGGGGGAGGGGAGGACTACAAATTAAATTTGAAAGTCTTGGAAATTTTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGCCCTATACTACAACAAACACAAACTACCATCTCCTCAAGTAGACGTTCGAATCGAGATGTGGGTTCAAGAAGTATCATCGGTTTCTGAGCTAACACAGGATTTCGAAATAGGTGTGTTTACAATTTTTGTCTTCTTTTGGCAACAAACAACACCTTCACGCTTTTTTTCCAGACTTGTACATGAACGAATACTGGACGGACCCCGGCCTAGCATACGACATTCTCAATCCGTGTCAGGTAATTTGTCACTCAAATGATCTCCTCCTCAGTTTCCGTGTATAGGGCAATTTATCCTTTGATTGGGCTGTCATGCAAAACATCTGGACGCCCAATACATGCTTCATCAATTCCAAAAAGGCACAGCTTCACAGCTCTCCATTCACCAACGTCTTCTTGATGGTTTTCCCGAATGGTACGTTTTGAAGCGTTGCTCGTTAAGTGTGTAGTGACTTATGCTGATTCGCTTATGCAAAATTTTTGGGTGAAGCGAGGGAAGGAGGGGGAGGGGAGGACTACAAATTAAATTTGAAAGTCTTGGAAATTTTGGAATTTGTAGGATTGGGTAGTTGGCCGTTGTAGTCGTCACAAAGCTTCCTGAAACTTGATGAGAATCGGAAAGCCAACAAAAAAAAAGAAAAAAATTGTGTCGGAAGGAAATGGGGAATGATATAGGATACAGTGTTTCCGTTCTAGCTTCTTCCTGTAGGGTTTTTGTTACAAGCTAGCGAAAAGATCAAGACAAAAGGTAGCACAATGAATAATTGATCACCAGGGAGAACAGAAACAATGAGCGTGAATAATTGTGTAGTAGAGTGTATGTGTGTACTCACCTTTTTCCAGGATCCGTCTGGTCGAATTGGCGCATCAAAAGTACCGGACCGTGTGTCATGGATCTCACCAAATTCCCCATGGACAGTATCGAGTGTTCTTTGACTTTCGAATCATTCAACTACAACAAGGTTGCCATCCAATTATAACCACTTTTCTTTTTTTGTG</canonical>
            <polymorphic>AGTGCCCTATACTACAACAAACACAAACTACCATCTCCTCAAGTAGACGTTCGAATCGAGATGTGGGTTCAAGAAGTATCATCGGTTTCTGAGCTAACACAGGATTTCGAAATAGGTGTGTTTACAATTTTTGTCTTCTTTTGGCAACAAACAACACCTTCACGCTTTTTTTCCAGACTTGTACATGAACGAATACTGGACGGACCCCGGCCTAGCATACGACATTCTCAATCCGTGTCAGGTAATTTGTCACTCAAATGATCTCCTCCTCAGTTTCCGTGTATAGGGCAATTTATCCTTTGATTGGGCTGTCATGCAAAACATCTGGACGCCCAATACATGCTTCATCAATTCCAAAAAGGCACAGCTTCACAGCTCTCCATTCACCAACGTCTTCTTGATGGTTTTCCCGAATGGTACGTTTTGAAGCGTTGCTCGTTAAGTGTGTAGTGACTTATGCTGATTCGCTTATGCAAAATTTTTGGGTGAAGCGAGGGAARGAGGGGGAGGGGAGGACTACAAATTAAATTTGAAAGTCTTGGAAATTTTGGAATTTGTAGGATTGGGTAGTTGGCCGTTGTAGTCGTCACAAAGCTTCCTGAAACTTGATGAGAATCGGAAAGCCAACAAAAAAAAAGAAAAAAATTGTGTCGGAAGGAAATGGGGAATGATATAGGATACAGTGTTTCCGTTCTAGCTTCTTCCTGTAGGGTTTTTGTTACAAGCTAGCGAAAAGATCAAGACAAAAGGTAGCACAATGAATAATTGATCACCAGGGAGAACAGAAACAATGAGCGTGAATAATTGTGTAGTAGAGTGTATGTGTGTACTCACCTTTTTCCAGGATCCGTCTGGTCGAATTGGCGCATCAAAAGTACCGGACCGTGTGTCATGGATCTCACCAAATTCCCCATGGACAGTATCGAGTGTTCTTTGACTTTCGAATCATTCAACTACAACAAGGTTGCCATCCAATTATAACCACTTTTCTTTTTTTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGCTCGTTAAGTGTGTAGTG</pcr_primer_p1>
		<pcr_primer_p2>TATCCTATATCATTCCCCATTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTGCTCGTTAAGTGTGTAGTGACTTATGCTGATTCGCTTATGCAAAATTTTTGGGTGAAGCGAGGGAAGGAGGGGGAGGGGAGGACTACAAATTAAATTTGAAAGTCTTGGAAATTTTGGAATTTGTAGGATTGGGTAGTTGGCCGTTGTAGTCGTCACAAAGCTTCCTGAAACTTGATGAGAATCGGAAAGCCAACAAAAAAAAAGAAAAAAATTGTGTCGGAAGGAAATGGGGAATGATATAGGATA</canonical_amplicon>
		<polymorphic_amplicon>GTTGCTCGTTAAGTGTGTAGTGACTTATGCTGATTCGCTTATGCAAAATTTTTGGGTGAAGCGAGGGAARGAGGGGGAGGGGAGGACTACAAATTAAATTTGAAAGTCTTGGAAATTTTGGAATTTGTAGGATTGGGTAGTTGGCCGTTGTAGTCGTCACAAAGCTTCCTGAAACTTGATGAGAATCGGAAAGCCAACAAAAAAAAAGAAAAAAATTGTGTCGGAAGGAAATGGGGAATGATATAGGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20171</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>244159</contig_pos>
        <strand>+</strand>
        <context>TGCTGATTCG[C/T]TTATGCAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACGTTTTGAAGCGTTGCTCGTTAAGTGTGTAGTGACTTATGCTGATTCG</left_flank>
        <right_flank>TTATGCAAAATTTTTGGGTGAAGCGAGGGAAGGAGGGGGAGGGGAGGACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACTGAAATCATCGACCATCTCCTTTTCGAAAGTGCCCTATACTACAACAAACACAAACTACCATCTCCTCAAGTAGACGTTCGAATCGAGATGTGGGTTCAAGAAGTATCATCGGTTTCTGAGCTAACACAGGATTTCGAAATAGGTGTGTTTACAATTTTTGTCTTCTTTTGGCAACAAACAACACCTTCACGCTTTTTTTCCAGACTTGTACATGAACGAATACTGGACGGACCCCGGCCTAGCATACGACATTCTCAATCCGTGTCAGGTAATTTGTCACTCAAATGATCTCCTCCTCAGTTTCCGTGTATAGGGCAATTTATCCTTTGATTGGGCTGTCATGCAAAACATCTGGACGCCCAATACATGCTTCATCAATTCCAAAAAGGCACAGCTTCACAGCTCTCCATTCACCAACGTCTTCTTGATGGTTTTCCCGAATGGTACGTTTTGAAGCGTTGCTCGTTAAGTGTGTAGTGACTTATGCTGATTCGCTTATGCAAAATTTTTGGGTGAAGCGAGGGAAGGAGGGGGAGGGGAGGACTACAAATTAAATTTGAAAGTCTTGGAAATTTTGGAATTTGTAGGATTGGGTAGTTGGCCGTTGTAGTCGTCACAAAGCTTCCTGAAACTTGATGAGAATCGGAAAGCCAACAAAAAAAAAGAAAAAAATTGTGTCGGAAGGAAATGGGGAATGATATAGGATACAGTGTTTCCGTTCTAGCTTCTTCCTGTAGGGTTTTTGTTACAAGCTAGCGAAAAGATCAAGACAAAAGGTAGCACAATGAATAATTGATCACCAGGGAGAACAGAAACAATGAGCGTGAATAATTGTGTAGTAGAGTGTATGTGTGTACTCACCTTTTTCCAGGATCCGTCTGGTCGAATTGGCGCATCAAAAGTACCGGACCGTGTGTCATGGATCTCACCAAATTCCCCATGGACAGTATCGAGTGTTCTTTGACTTTCGAATCATTCAACTACAACAAGGTTGC</canonical>
            <polymorphic>ACACTGAAATCATCGACCATCTCCTTTTCGAAAGTGCCCTATACTACAACAAACACAAACTACCATCTCCTCAAGTAGACGTTCGAATCGAGATGTGGGTTCAAGAAGTATCATCGGTTTCTGAGCTAACACAGGATTTCGAAATAGGTGTGTTTACAATTTTTGTCTTCTTTTGGCAACAAACAACACCTTCACGCTTTTTTTCCAGACTTGTACATGAACGAATACTGGACGGACCCCGGCCTAGCATACGACATTCTCAATCCGTGTCAGGTAATTTGTCACTCAAATGATCTCCTCCTCAGTTTCCGTGTATAGGGCAATTTATCCTTTGATTGGGCTGTCATGCAAAACATCTGGACGCCCAATACATGCTTCATCAATTCCAAAAAGGCACAGCTTCACAGCTCTCCATTCACCAACGTCTTCTTGATGGTTTTCCCGAATGGTACGTTTTGAAGCGTTGCTCGTTAAGTGTGTAGTGACTTATGCTGATTCGYTTATGCAAAATTTTTGGGTGAAGCGAGGGAAGGAGGGGGAGGGGAGGACTACAAATTAAATTTGAAAGTCTTGGAAATTTTGGAATTTGTAGGATTGGGTAGTTGGCCGTTGTAGTCGTCACAAAGCTTCCTGAAACTTGATGAGAATCGGAAAGCCAACAAAAAAAAAGAAAAAAATTGTGTCGGAAGGAAATGGGGAATGATATAGGATACAGTGTTTCCGTTCTAGCTTCTTCCTGTAGGGTTTTTGTTACAAGCTAGCGAAAAGATCAAGACAAAAGGTAGCACAATGAATAATTGATCACCAGGGAGAACAGAAACAATGAGCGTGAATAATTGTGTAGTAGAGTGTATGTGTGTACTCACCTTTTTCCAGGATCCGTCTGGTCGAATTGGCGCATCAAAAGTACCGGACCGTGTGTCATGGATCTCACCAAATTCCCCATGGACAGTATCGAGTGTTCTTTGACTTTCGAATCATTCAACTACAACAAGGTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCACCAACGTCTTCTTGA</pcr_primer_p1>
		<pcr_primer_p2>CTTTCCGATTCTCATCAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ATTCACCAACGTCTTCTTGATGGTTTTCCCGAATGGTACGTTTTGAAGCGTTGCTCGTTAAGTGTGTAGTGACTTATGCTGATTCGCTTATGCAAAATTTTTGGGTGAAGCGAGGGAAGGAGGGGGAGGGGAGGACTACAAATTAAATTTGAAAGTCTTGGAAATTTTGGAATTTGTAGGATTGGGTAGTTGGCCGTTGTAGTCGTCACAAAGCTTCCTGAAACTTGATGAGAATCGGAAAG</canonical_amplicon>
		<polymorphic_amplicon>ATTCACCAACGTCTTCTTGATGGTTTTCCCGAATGGTACGTTTTGAAGCGTTGCTCGTTAAGTGTGTAGTGACTTATGCTGATTCGYTTATGCAAAATTTTTGGGTGAAGCGAGGGAAGGAGGGGGAGGGGAGGACTACAAATTAAATTTGAAAGTCTTGGAAATTTTGGAATTTGTAGGATTGGGTAGTTGGCCGTTGTAGTCGTCACAAAGCTTCCTGAAACTTGATGAGAATCGGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20220</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>267045</contig_pos>
        <strand>+</strand>
        <context>ATTGAAAATG[A/G]AGGGACAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGATAGAGAGAGAGAGAAAGAGAAGCTTAAAGAAACAGAAATTGAAAATG</left_flank>
        <right_flank>AGGGACAGAAAAAAAAGCGAACCGAAGCACATACACACTCCGACAGAGAG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTTTTCTGGAAATTTATTTTCATGGGAACAGGAAACTGAGAAGCCCCTATGAAATATAACACGATATGAAATGTGAGAACTCGTTATTTTTGTGCACTTGCCTTTTTTCTCTGAACACTATAATTTGATTCTGAGAGAAGAGAATTTTGAGATAGTGGCTGCAATTCGACTCATTATAAGGCTAAAAACGGCAGGACTATGACAGTTTTCAGACATTTTTCAACAGTAATATTTGACCTTGCTCGATTAGTACCAAATTTTGGCATTTAAAAAATTCCCCGTTTTTGGCAAATTTTACCTCGAAAAATTGGAAAAAATTGTTCTACAGAATCAAAAAAATCCAACTCGTACACTTTTTTTTTTGGCTGGCGCTCGCTCCTACTCTTTTTTTTGTGATGACATATATGGGCGCTGGCCAAAGAGAGAGGGAAAAGAGAGAAGTAGAGATAGAGAGAGAGAGAAAGAGAAGCTTAAAGAAACAGAAATTGAAAATGGAGGGACAGAAAAAAAAGCGAACCGAAGCACATACACACTCCGACAGAGAGAAAAAAGTAGAAGGAAGAGACGAGGATCAACCCCGTACTGAACACAAAACTCGCCCTCCGAATGACATAGATTGCGAGAGAACAAGAGGAATAGAGAACACAAGAAAAACAATAATATCTGTGGCGGGTAATTGGTAGGTCATCACTGTGTAGTCTCGAGTGAAGGGGGGGAGTCCCGATAGTTATTGATCGGGAACACACAATATGCGGGACCATTCCCTCTTCCCCTCTTTTCTGCGCGCACATTGGAGGTCGGGTCATTGCGCGTAATGTTTTTCTAGGTCCCCTCTTTCTCATCACTTGCCGGAGAGTACTGTCTTTGTCTTAGCAGGCAAGAAATTTGGGGATTTTCGCTGGAAAATAATAGAAAAAGAAAGAAAAGAAAGTGGTTTTTAAGGGAAAGAGACTCTGAAATGCAATTTCGCACCAAATCGGTAAATATTTAGTTAT</canonical>
            <polymorphic>TTTTTTTTTTCTGGAAATTTATTTTCATGGGAACAGGAAACTGAGAAGCCCCTATGAAATATAACACGATATGAAATGTGAGAACTCGTTATTTTTGTGCACTTGCCTTTTTTCTCTGAACACTATAATTTGATTCTGAGAGAAGAGAATTTTGAGATAGTGGCTGCAATTCGACTCATTATAAGGCTAAAAACGGCAGGACTATGACAGTTTTCAGACATTTTTCAACAGTAATATTTGACCTTGCTCGATTAGTACCAAATTTTGGCATTTAAAAAATTCCCCGTTTTTGGCAAATTTTACCTCGAAAAATTGGAAAAAATTGTTCTACAGAATCAAAAAAATCCAACTCGTACACTTTTTTTTTTGGCTGGCGCTCGCTCCTACTCTTTTTTTTGTGATGACATATATGGGCGCTGGCCAAAGAGAGAGGGAAAAGAGAGAAGTAGAGATAGAGAGAGAGAGAAAGAGAAGCTTAAAGAAACAGAAATTGAAAATGRAGGGACAGAAAAAAAAGCGAACCGAAGCACATACACACTCCGACAGAGAGAAAAAAGTAGAAGGAAGAGACGAGGATCAACCCCGTACTGAACACAAAACTCGCCCTCCGAATGACATAGATTGCGAGAGAACAAGAGGAATAGAGAACACAAGAAAAACAATAATATCTGTGGCGGGTAATTGGTAGGTCATCACTGTGTAGTCTCGAGTGAAGGGGGGGAGTCCCGATAGTTATTGATCGGGAACACACAATATGCGGGACCATTCCCTCTTCCCCTCTTTTCTGCGCGCACATTGGAGGTCGGGTCATTGCGCGTAATGTTTTTCTAGGTCCCCTCTTTCTCATCACTTGCCGGAGAGTACTGTCTTTGTCTTAGCAGGCAAGAAATTTGGGGATTTTCGCTGGAAAATAATAGAAAAAGAAAGAAAAGAAAGTGGTTTTTAAGGGAAAGAGACTCTGAAATGCAATTTCGCACCAAATCGGTAAATATTTAGTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCCAACTCGTACACTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTCGTCTCTTCCTTCTACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCCAACTCGTACACTTTTTTTTTTGGCTGGCGCTCGCTCCTACTCTTTTTTTTGTGATGACATATATGGGCGCTGGCCAAAGAGAGAGGGAAAAGAGAGAAGTAGAGATAGAGAGAGAGAGAAAGAGAAGCTTAAAGAAACAGAAATTGAAAATGGAGGGACAGAAAAAAAAGCGAACCGAAGCACATACACACTCCGACAGAGAGAAAAAAGTAGAAGGAAGAGACGAG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCCAACTCGTACACTTTTTTTTTTGGCTGGCGCTCGCTCCTACTCTTTTTTTTGTGATGACATATATGGGCGCTGGCCAAAGAGAGAGGGAAAAGAGAGAAGTAGAGATAGAGAGAGAGAGAAAGAGAAGCTTAAAGAAACAGAAATTGAAAATGRAGGGACAGAAAAAAAAGCGAACCGAAGCACATACACACTCCGACAGAGAGAAAAAAGTAGAAGGAAGAGACGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20221</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>268876</contig_pos>
        <strand>+</strand>
        <context>ACAAAACTAG[C/T]ACAGGATAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGGTGTAGTACCTCGCACAAAAAGATGACAACACCTGACACAAAACTAG</left_flank>
        <right_flank>ACAGGATAACCTGAATTCTAGTTTGAGTGATTGCAGAGAACAGTTTTAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAATCAAAAATGTGAAGGCGCTGACACGAGAGATGTAGGCTATCTTGTGAACTATGGCGAAAAATTGAAAAATGACTAATTTTCAAATAATCACAACCAGAAATACAAAGTTTTAAAAAGTAAGTAAAACGAAAAACCGGATTTTAAAATTGATTGTTCGAGTTCAAGGCAACTTAGGACAATATCGTTTTTTTTTAATTTTGAGAGTATCAGAGTGTAGTATAGATTCTTAGAAAATTTTTCTGCGGCTTATTTGAGCTTCTGAGACAAAAAAAAACAATGAAAATATTTTTGAACTCTTCAAGAATAACCGTTTTGAATTTTCTAACTAAATTCGGTAGATTAAAATAAACAAAATCGGGGACAAAAACCGTTGTTTGGCAATCGTAGTCACAATTGTTGGGTCGTTGAGAAATCCGTCGACCATTTTTGTCCTCGAGGCGAAGGTAGGTGTAGTACCTCGCACAAAAAGATGACAACACCTGACACAAAACTAGTACAGGATAACCTGAATTCTAGTTTGAGTGATTGCAGAGAACAGTTTTAGAATTTTCAAATCTTCTCAGTTTTTCGAGAAAGTTTAGGGATGATTTTGGGAATAGTAGAAATCTAACTAGTGTTTTCAGCCTGAATCAAAGTCGATTGGCTGGCTGAATTTTGATTTCTTGACTTTGAAATCGTATTATTATTATTATTCAAAACTCAAACCTAAAGCTTTGTTCACGAAATATCAACGTATATGGCATTTATATGGTCACCTGATATCAATTTGTGTTAGAGAGAGAGCTGTTGTGTTTGTTATTCAAAAAGAAAATAATTATCATATTCTGATCCGTTTTTGATAAATTCGTATAAAGTCAACCCGTCTTAAAGTTAGCTGGTTTCTAAGAAATGTTGTTCATGCTTCTTCAAACAAGGAAGTGCTCGAAAATAGACAAAGTTTTAGCAGTCACCGGGCTTCCATTCAATTCCTACATTGCACATATTAATGTGACATA</canonical>
            <polymorphic>TGAAATCAAAAATGTGAAGGCGCTGACACGAGAGATGTAGGCTATCTTGTGAACTATGGCGAAAAATTGAAAAATGACTAATTTTCAAATAATCACAACCAGAAATACAAAGTTTTAAAAAGTAAGTAAAACGAAAAACCGGATTTTAAAATTGATTGTTCGAGTTCAAGGCAACTTAGGACAATATCGTTTTTTTTTAATTTTGAGAGTATCAGAGTGTAGTATAGATTCTTAGAAAATTTTTCTGCGGCTTATTTGAGCTTCTGAGACAAAAAAAAACAATGAAAATATTTTTGAACTCTTCAAGAATAACCGTTTTGAATTTTCTAACTAAATTCGGTAGATTAAAATAAACAAAATCGGGGACAAAAACCGTTGTTTGGCAATCGTAGTCACAATTGTTGGGTCGTTGAGAAATCCGTCGACCATTTTTGTCCTCGAGGCGAAGGTAGGTGTAGTACCTCGCACAAAAAGATGACAACACCTGACACAAAACTAGYACAGGATAACCTGAATTCTAGTTTGAGTGATTGCAGAGAACAGTTTTAGAATTTTCAAATCTTCTCAGTTTTTCGAGAAAGTTTAGGGATGATTTTGGGAATAGTAGAAATCTAACTAGTGTTTTCAGCCTGAATCAAAGTCGATTGGCTGGCTGAATTTTGATTTCTTGACTTTGAAATCGTATTATTATTATTATTCAAAACTCAAACCTAAAGCTTTGTTCACGAAATATCAACGTATATGGCATTTATATGGTCACCTGATATCAATTTGTGTTAGAGAGAGAGCTGTTGTGTTTGTTATTCAAAAAGAAAATAATTATCATATTCTGATCCGTTTTTGATAAATTCGTATAAAGTCAACCCGTCTTAAAGTTAGCTGGTTTCTAAGAAATGTTGTTCATGCTTCTTCAAACAAGGAAGTGCTCGAAAATAGACAAAGTTTTAGCAGTCACCGGGCTTCCATTCAATTCCTACATTGCACATATTAATGTGACATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 459 41</canonical_bands>
                <polymorphic_bands>541 459</polymorphic_bands>
            </assay>
            <assay>
                <site>ACTAGT</site>
                <isoschizomers>
                    <enzyme>AhlI</enzyme>
                    <enzyme>BcuI</enzyme>
                    <enzyme>SpeI</enzyme>
                </isoschizomers>
                <canonical_bands>495 385 120</canonical_bands>
                <polymorphic_bands>615 385</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGGTAGATTAAAATAAACAAAATC</pcr_primer_p1>
		<pcr_primer_p2>TAAACTTTCTCGAAAAACTGAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCGGTAGATTAAAATAAACAAAATCGGGGACAAAAACCGTTGTTTGGCAATCGTAGTCACAATTGTTGGGTCGTTGAGAAATCCGTCGACCATTTTTGTCCTCGAGGCGAAGGTAGGTGTAGTACCTCGCACAAAAAGATGACAACACCTGACACAAAACTAGTACAGGATAACCTGAATTCTAGTTTGAGTGATTGCAGAGAACAGTTTTAGAATTTTCAAATCTTCTCAGTTTTTCGAGAAAGTTTA</canonical_amplicon>
		<polymorphic_amplicon>TCGGTAGATTAAAATAAACAAAATCGGGGACAAAAACCGTTGTTTGGCAATCGTAGTCACAATTGTTGGGTCGTTGAGAAATCCGTCGACCATTTTTGTCCTCGAGGCGAAGGTAGGTGTAGTACCTCGCACAAAAAGATGACAACACCTGACACAAAACTAGYACAGGATAACCTGAATTCTAGTTTGAGTGATTGCAGAGAACAGTTTTAGAATTTTCAAATCTTCTCAGTTTTTCGAGAAAGTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20222</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>268804</contig_pos>
        <strand>+</strand>
        <context>TCCGTCGACC[A/G]TTTTTGTCCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTGGCAATCGTAGTCACAATTGTTGGGTCGTTGAGAAATCCGTCGACC</left_flank>
        <right_flank>TTTTTGTCCTCGAGGCGAAGGTAGGTGTAGTACCTCGCACAAAAAGATGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTTTTTGACAGGCATTCGGCAGACATGTCACTGGTTAAGTGGTCAAAAGGACATGTTTTTCAAAGATTCGTGAAATCAAAAATGTGAAGGCGCTGACACGAGAGATGTAGGCTATCTTGTGAACTATGGCGAAAAATTGAAAAATGACTAATTTTCAAATAATCACAACCAGAAATACAAAGTTTTAAAAAGTAAGTAAAACGAAAAACCGGATTTTAAAATTGATTGTTCGAGTTCAAGGCAACTTAGGACAATATCGTTTTTTTTTAATTTTGAGAGTATCAGAGTGTAGTATAGATTCTTAGAAAATTTTTCTGCGGCTTATTTGAGCTTCTGAGACAAAAAAAAACAATGAAAATATTTTTGAACTCTTCAAGAATAACCGTTTTGAATTTTCTAACTAAATTCGGTAGATTAAAATAAACAAAATCGGGGACAAAAACCGTTGTTTGGCAATCGTAGTCACAATTGTTGGGTCGTTGAGAAATCCGTCGACCATTTTTGTCCTCGAGGCGAAGGTAGGTGTAGTACCTCGCACAAAAAGATGACAACACCTGACACAAAACTAGTACAGGATAACCTGAATTCTAGTTTGAGTGATTGCAGAGAACAGTTTTAGAATTTTCAAATCTTCTCAGTTTTTCGAGAAAGTTTAGGGATGATTTTGGGAATAGTAGAAATCTAACTAGTGTTTTCAGCCTGAATCAAAGTCGATTGGCTGGCTGAATTTTGATTTCTTGACTTTGAAATCGTATTATTATTATTATTCAAAACTCAAACCTAAAGCTTTGTTCACGAAATATCAACGTATATGGCATTTATATGGTCACCTGATATCAATTTGTGTTAGAGAGAGAGCTGTTGTGTTTGTTATTCAAAAAGAAAATAATTATCATATTCTGATCCGTTTTTGATAAATTCGTATAAAGTCAACCCGTCTTAAAGTTAGCTGGTTTCTAAGAAATGTTGTTCATGCTTCTTCAAACAAGGAAGTGCTC</canonical>
            <polymorphic>TCGTTTTTGACAGGCATTCGGCAGACATGTCACTGGTTAAGTGGTCAAAAGGACATGTTTTTCAAAGATTCGTGAAATCAAAAATGTGAAGGCGCTGACACGAGAGATGTAGGCTATCTTGTGAACTATGGCGAAAAATTGAAAAATGACTAATTTTCAAATAATCACAACCAGAAATACAAAGTTTTAAAAAGTAAGTAAAACGAAAAACCGGATTTTAAAATTGATTGTTCGAGTTCAAGGCAACTTAGGACAATATCGTTTTTTTTTAATTTTGAGAGTATCAGAGTGTAGTATAGATTCTTAGAAAATTTTTCTGCGGCTTATTTGAGCTTCTGAGACAAAAAAAAACAATGAAAATATTTTTGAACTCTTCAAGAATAACCGTTTTGAATTTTCTAACTAAATTCGGTAGATTAAAATAAACAAAATCGGGGACAAAAACCGTTGTTTGGCAATCGTAGTCACAATTGTTGGGTCGTTGAGAAATCCGTCGACCRTTTTTGTCCTCGAGGCGAAGGTAGGTGTAGTACCTCGCACAAAAAGATGACAACACCTGACACAAAACTAGTACAGGATAACCTGAATTCTAGTTTGAGTGATTGCAGAGAACAGTTTTAGAATTTTCAAATCTTCTCAGTTTTTCGAGAAAGTTTAGGGATGATTTTGGGAATAGTAGAAATCTAACTAGTGTTTTCAGCCTGAATCAAAGTCGATTGGCTGGCTGAATTTTGATTTCTTGACTTTGAAATCGTATTATTATTATTATTCAAAACTCAAACCTAAAGCTTTGTTCACGAAATATCAACGTATATGGCATTTATATGGTCACCTGATATCAATTTGTGTTAGAGAGAGAGCTGTTGTGTTTGTTATTCAAAAAGAAAATAATTATCATATTCTGATCCGTTTTTGATAAATTCGTATAAAGTCAACCCGTCTTAAAGTTAGCTGGTTTCTAAGAAATGTTGTTCATGCTTCTTCAAACAAGGAAGTGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAATAACCGTTTTGAATTTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTCTAAAACTGTTCTCTGCAATC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAATAACCGTTTTGAATTTTCTAACTAAATTCGGTAGATTAAAATAAACAAAATCGGGGACAAAAACCGTTGTTTGGCAATCGTAGTCACAATTGTTGGGTCGTTGAGAAATCCGTCGACCATTTTTGTCCTCGAGGCGAAGGTAGGTGTAGTACCTCGCACAAAAAGATGACAACACCTGACACAAAACTAGTACAGGATAACCTGAATTCTAGTTTGAGTGATTGCAGAGAACAGTTTTAGAA</canonical_amplicon>
		<polymorphic_amplicon>AGAATAACCGTTTTGAATTTTCTAACTAAATTCGGTAGATTAAAATAAACAAAATCGGGGACAAAAACCGTTGTTTGGCAATCGTAGTCACAATTGTTGGGTCGTTGAGAAATCCGTCGACCRTTTTTGTCCTCGAGGCGAAGGTAGGTGTAGTACCTCGCACAAAAAGATGACAACACCTGACACAAAACTAGTACAGGATAACCTGAATTCTAGTTTGAGTGATTGCAGAGAACAGTTTTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20223</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>299004</contig_pos>
        <strand>+</strand>
        <context>TGTGTCTTTT[C/T]AAGGCTTACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTCACAGACTGGGTTAGTCCTTTTCCTTGTCCTCTAATGTGTCTTTT</left_flank>
        <right_flank>AAGGCTTACCTAGGTTAAATACATGTTCCCAATTAGAAGATTAGTATAGT</right_flank>
        <qual_score>146</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTATTAATTACATAAGAGTATCCTATTTTTCCTACTAAATCCTCCCCTCGCCTCAATTATTATTACGGTAACATATGTTGTTACGCATTAGATTCGTTGCTTTCCTACGTTCTCTTTCTCTAATGCAGATTATTTTTTTATGATCAATTTTCTTTTAATCCTCCGCGTAATGAATCTTGTTGCCTCATCTCTTTTTTGATTAGTATTTTATAAATCTATCTCTTCTAGCAGGATAGACAATGGTGTCTAAAGCAGAGAAACCTAAGCAATCCGGAATGTTCAGTGTGGAAAGTCTTCTGGAGACGACGACTCCACAAAAAAGTTCTGTCAAAGATGAGAATCTGTTGAAACCTCCTGCTCCAATAACGCCAAAAACTCCACTTATGCTACCAGGACTGCATCATATGGCTCCATACTTTGGAGCGCAACTTGACCCGGTTATGATTTATTTTTCACAGACTGGGTTAGTCCTTTTCCTTGTCCTCTAATGTGTCTTTTCAAGGCTTACCTAGGTTAAATACATGTTCCCAATTAGAAGATTAGTATAGTAACATCCGTCTTTCCCATCTAATCCTAAGCCCCCTTTCAGTAACCGTCTGCCTGTCATGAGTTCTGACAGCTCACCGGAATCCTCTGCCTCATCGCCACTGTCCATGCAACATCACACCCTTCCATGGCTATCATCCCAACGAGAGGATTCACCGAGTACGCCCCAACAATTCTTAATTGGAAATTCTAGAAACTCTAATTTACAGCCAGCGACGATGCGAAAATCCAAATCGGTCTCACCAAGTGCATGTTGCGGAAGCATAAAAACAATCGAAAGCCTCGTACCCCGTTTTCCACGCAGCAACTTATTTCCCTGGAGCGAAAATTTCAATCCAAACAGTATTTGTCGATTGCCGAGCGTGCCGAGTTCAGCGCGTCGTTGCAATTAACGGAGACGCAAGTCAAGATATGGTTCCAGGTTAGTCAATCTGACAGTATCCCCACACAAAC</canonical>
            <polymorphic>CCTATTAATTACATAAGAGTATCCTATTTTTCCTACTAAATCCTCCCCTCGCCTCAATTATTATTACGGTAACATATGTTGTTACGCATTAGATTCGTTGCTTTCCTACGTTCTCTTTCTCTAATGCAGATTATTTTTTTATGATCAATTTTCTTTTAATCCTCCGCGTAATGAATCTTGTTGCCTCATCTCTTTTTTGATTAGTATTTTATAAATCTATCTCTTCTAGCAGGATAGACAATGGTGTCTAAAGCAGAGAAACCTAAGCAATCCGGAATGTTCAGTGTGGAAAGTCTTCTGGAGACGACGACTCCACAAAAAAGTTCTGTCAAAGATGAGAATCTGTTGAAACCTCCTGCTCCAATAACGCCAAAAACTCCACTTATGCTACCAGGACTGCATCATATGGCTCCATACTTTGGAGCGCAACTTGACCCGGTTATGATTTATTTTTCACAGACTGGGTTAGTCCTTTTCCTTGTCCTCTAATGTGTCTTTTYAAGGCTTACCTAGGTTAAATACATGTTCCCAATTAGAAGATTAGTATAGTAACATCCGTCTTTCCCATCTAATCCTAAGCCCCCTTTCAGTAACCGTCTGCCTGTCATGAGTTCTGACAGCTCACCGGAATCCTCTGCCTCATCGCCACTGTCCATGCAACATCACACCCTTCCATGGCTATCATCCCAACGAGAGGATTCACCGAGTACGCCCCAACAATTCTTAATTGGAAATTCTAGAAACTCTAATTTACAGCCAGCGACGATGCGAAAATCCAAATCGGTCTCACCAAGTGCATGTTGCGGAAGCATAAAAACAATCGAAAGCCTCGTACCCCGTTTTCCACGCAGCAACTTATTTCCCTGGAGCGAAAATTTCAATCCAAACAGTATTTGTCGATTGCCGAGCGTGCCGAGTTCAGCGCGTCGTTGCAATTAACGGAGACGCAAGTCAAGATATGGTTCCAGGTTAGTCAATCTGACAGTATCCCCACACAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGTTCTGTCAAAGATGAGA</pcr_primer_p1>
		<pcr_primer_p2>GGGAAAGACGGATGTTACTATAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGTTCTGTCAAAGATGAGAATCTGTTGAAACCTCCTGCTCCAATAACGCCAAAAACTCCACTTATGCTACCAGGACTGCATCATATGGCTCCATACTTTGGAGCGCAACTTGACCCGGTTATGATTTATTTTTCACAGACTGGGTTAGTCCTTTTCCTTGTCCTCTAATGTGTCTTTTCAAGGCTTACCTAGGTTAAATACATGTTCCCAATTAGAAGATTAGTATAGTAACATCCGTCTTTCCC</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGTTCTGTCAAAGATGAGAATCTGTTGAAACCTCCTGCTCCAATAACGCCAAAAACTCCACTTATGCTACCAGGACTGCATCATATGGCTCCATACTTTGGAGCGCAACTTGACCCGGTTATGATTTATTTTTCACAGACTGGGTTAGTCCTTTTCCTTGTCCTCTAATGTGTCTTTTYAAGGCTTACCTAGGTTAAATACATGTTCCCAATTAGAAGATTAGTATAGTAACATCCGTCTTTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20224</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>299152</contig_pos>
        <strand>+</strand>
        <context>CCTCATCGCC[A/T]CTGTCCATGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGCCTGTCATGAGTTCTGACAGCTCACCGGAATCCTCTGCCTCATCGCC</left_flank>
        <right_flank>CTGTCCATGCAACATCACACCCTTCCATGGCTATCATCCCAACGAGAGGA</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCTTTTAATCCTCCGCGTAATGAATCTTGTTGCCTCATCTCTTTTTTGATTAGTATTTTATAAATCTATCTCTTCTAGCAGGATAGACAATGGTGTCTAAAGCAGAGAAACCTAAGCAATCCGGAATGTTCAGTGTGGAAAGTCTTCTGGAGACGACGACTCCACAAAAAAGTTCTGTCAAAGATGAGAATCTGTTGAAACCTCCTGCTCCAATAACGCCAAAAACTCCACTTATGCTACCAGGACTGCATCATATGGCTCCATACTTTGGAGCGCAACTTGACCCGGTTATGATTTATTTTTCACAGACTGGGTTAGTCCTTTTCCTTGTCCTCTAATGTGTCTTTTCAAGGCTTACCTAGGTTAAATACATGTTCCCAATTAGAAGATTAGTATAGTAACATCCGTCTTTCCCATCTAATCCTAAGCCCCCTTTCAGTAACCGTCTGCCTGTCATGAGTTCTGACAGCTCACCGGAATCCTCTGCCTCATCGCCACTGTCCATGCAACATCACACCCTTCCATGGCTATCATCCCAACGAGAGGATTCACCGAGTACGCCCCAACAATTCTTAATTGGAAATTCTAGAAACTCTAATTTACAGCCAGCGACGATGCGAAAATCCAAATCGGTCTCACCAAGTGCATGTTGCGGAAGCATAAAAACAATCGAAAGCCTCGTACCCCGTTTTCCACGCAGCAACTTATTTCCCTGGAGCGAAAATTTCAATCCAAACAGTATTTGTCGATTGCCGAGCGTGCCGAGTTCAGCGCGTCGTTGCAATTAACGGAGACGCAAGTCAAGATATGGTTCCAGGTTAGTCAATCTGACAGTATCCCCACACAAACGTAGATCATAAAATAGATCATAATCAAATCAATCGGCACGCGTATTTCATATAATTATAGTGTTTGCCGTTCCTTGATGCATAGATAACAGCCATATTACGACCTTCACGCCTTTCTGTAACGTTATAGATCCCAAGGCGTGATTTTG</canonical>
            <polymorphic>TTTTCTTTTAATCCTCCGCGTAATGAATCTTGTTGCCTCATCTCTTTTTTGATTAGTATTTTATAAATCTATCTCTTCTAGCAGGATAGACAATGGTGTCTAAAGCAGAGAAACCTAAGCAATCCGGAATGTTCAGTGTGGAAAGTCTTCTGGAGACGACGACTCCACAAAAAAGTTCTGTCAAAGATGAGAATCTGTTGAAACCTCCTGCTCCAATAACGCCAAAAACTCCACTTATGCTACCAGGACTGCATCATATGGCTCCATACTTTGGAGCGCAACTTGACCCGGTTATGATTTATTTTTCACAGACTGGGTTAGTCCTTTTCCTTGTCCTCTAATGTGTCTTTTCAAGGCTTACCTAGGTTAAATACATGTTCCCAATTAGAAGATTAGTATAGTAACATCCGTCTTTCCCATCTAATCCTAAGCCCCCTTTCAGTAACCGTCTGCCTGTCATGAGTTCTGACAGCTCACCGGAATCCTCTGCCTCATCGCCWCTGTCCATGCAACATCACACCCTTCCATGGCTATCATCCCAACGAGAGGATTCACCGAGTACGCCCCAACAATTCTTAATTGGAAATTCTAGAAACTCTAATTTACAGCCAGCGACGATGCGAAAATCCAAATCGGTCTCACCAAGTGCATGTTGCGGAAGCATAAAAACAATCGAAAGCCTCGTACCCCGTTTTCCACGCAGCAACTTATTTCCCTGGAGCGAAAATTTCAATCCAAACAGTATTTGTCGATTGCCGAGCGTGCCGAGTTCAGCGCGTCGTTGCAATTAACGGAGACGCAAGTCAAGATATGGTTCCAGGTTAGTCAATCTGACAGTATCCCCACACAAACGTAGATCATAAAATAGATCATAATCAAATCAATCGGCACGCGTATTTCATATAATTATAGTGTTTGCCGTTCCTTGATGCATAGATAACAGCCATATTACGACCTTCACGCCTTTCTGTAACGTTATAGATCCCAAGGCGTGATTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>447 239 164 95 55</canonical_bands>
                <polymorphic_bands>447 294 164 95</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>131 98 87 81 75 66 66 50 46 43 40 37 35 34 27 24 24 17 7 6 2 2 2</canonical_bands>
                <polymorphic_bands>131 98 87 81 75 66 66 50 46 43 41 40 37 35 34 27 24 7 6 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTAAATACATGTTCCCAATTA</pcr_primer_p1>
		<pcr_primer_p2>GCTGGCTGTAAATTAGAGTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTTAAATACATGTTCCCAATTAGAAGATTAGTATAGTAACATCCGTCTTTCCCATCTAATCCTAAGCCCCCTTTCAGTAACCGTCTGCCTGTCATGAGTTCTGACAGCTCACCGGAATCCTCTGCCTCATCGCCACTGTCCATGCAACATCACACCCTTCCATGGCTATCATCCCAACGAGAGGATTCACCGAGTACGCCCCAACAATTCTTAATTGGAAATTCTAGAAACTCTAATTTACAGCCAGC</canonical_amplicon>
		<polymorphic_amplicon>GGTTAAATACATGTTCCCAATTAGAAGATTAGTATAGTAACATCCGTCTTTCCCATCTAATCCTAAGCCCCCTTTCAGTAACCGTCTGCCTGTCATGAGTTCTGACAGCTCACCGGAATCCTCTGCCTCATCGCCWCTGTCCATGCAACATCACACCCTTCCATGGCTATCATCCCAACGAGAGGATTCACCGAGTACGCCCCAACAATTCTTAATTGGAAATTCTAGAAACTCTAATTTACAGCCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20225</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>300006</contig_pos>
        <strand>+</strand>
        <context>ACAATGGTGT[C/T]AATGACGCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCCAATCTTTCAAAAATTCTTCGGACCGCGGAACACACACAATGGTGT</left_flank>
        <right_flank>AATGACGCAAGCTAATTGTCACATATTCAGCTGCTCATACAGGCTTTTCT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATCATAAAATAGATCATAATCAAATCAATCGGCACGCGTATTTCATATAATTATAGTGTTTGCCGTTCCTTGATGCATAGATAACAGCCATATTACGACCTTCACGCCTTTCTGTAACGTTATAGATCCCAAGGCGTGATTTTGTGCACCTGGTGTTCCTAATAAGATGGTATCTATGAAAGGAAAGAGCCGACTTTTTTGCTCATCCATTTTTTTGCGAGATCTATAGATACCTTAAAAGTGACTAACAATAACTGACACTTTCCACTCATCAACCGACTGTTGTGCCAGCTGTCTTTTATCTCGTGAGGAGGCAATACAGTACTCCATACTTGATACATTTTAAAGGGGTCCAGATGATGGCGCGCGCGCGGTTAATTGACCTTCCCCATCATCACGTAATTGGTAAATATTGCCCAAGGATGATAGCCCGATGGTTTTCGATGAAATCCAATCTTTCAAAAATTCTTCGGACCGCGGAACACACACAATGGTGTTAATGACGCAAGCTAATTGTCACATATTCAGCTGCTCATACAGGCTTTTCTTTTCTTCCCCCAATCAGTCACCCCGTTTGTGTGATGGGCCATAAAATTAGGACGGAATTGCGTTAGGGGCAGCATCACCATCTGCACAACCTTGATTTACTATTTTGAGAGAGATTCATACCTGTCATTTATTTCGCGCTTAGCTACAATATCTTATACATACATTCACATACCAAAAACATCTGAAGGTCGGCGTTGGTGTCAAAACTGTCAAACACTCTGCTTTCCCTCATTCATTGAGGTCTTAATGATATGATAAATGATCTAGAAGATTGCGGAATTTGGCAATGAAAATATTTCCGATATCACAGCTGGAGTCCATCTGGTTGACGAAAGATGATATTGAAAAATGGAAATGGAACAAAAAAATGAAACAAACTTACAGAATCGAAGGGCAAAATCAAAACGACTACAGGAAGCGGAAGTTGAAAAAGTGAAATTTGCTCAAGT</canonical>
            <polymorphic>AGATCATAAAATAGATCATAATCAAATCAATCGGCACGCGTATTTCATATAATTATAGTGTTTGCCGTTCCTTGATGCATAGATAACAGCCATATTACGACCTTCACGCCTTTCTGTAACGTTATAGATCCCAAGGCGTGATTTTGTGCACCTGGTGTTCCTAATAAGATGGTATCTATGAAAGGAAAGAGCCGACTTTTTTGCTCATCCATTTTTTTGCGAGATCTATAGATACCTTAAAAGTGACTAACAATAACTGACACTTTCCACTCATCAACCGACTGTTGTGCCAGCTGTCTTTTATCTCGTGAGGAGGCAATACAGTACTCCATACTTGATACATTTTAAAGGGGTCCAGATGATGGCGCGCGCGCGGTTAATTGACCTTCCCCATCATCACGTAATTGGTAAATATTGCCCAAGGATGATAGCCCGATGGTTTTCGATGAAATCCAATCTTTCAAAAATTCTTCGGACCGCGGAACACACACAATGGTGTYAATGACGCAAGCTAATTGTCACATATTCAGCTGCTCATACAGGCTTTTCTTTTCTTCCCCCAATCAGTCACCCCGTTTGTGTGATGGGCCATAAAATTAGGACGGAATTGCGTTAGGGGCAGCATCACCATCTGCACAACCTTGATTTACTATTTTGAGAGAGATTCATACCTGTCATTTATTTCGCGCTTAGCTACAATATCTTATACATACATTCACATACCAAAAACATCTGAAGGTCGGCGTTGGTGTCAAAACTGTCAAACACTCTGCTTTCCCTCATTCATTGAGGTCTTAATGATATGATAAATGATCTAGAAGATTGCGGAATTTGGCAATGAAAATATTTCCGATATCACAGCTGGAGTCCATCTGGTTGACGAAAGATGATATTGAAAAATGGAAATGGAACAAAAAAATGAAACAAACTTACAGAATCGAAGGGCAAAATCAAAACGACTACAGGAAGCGGAAGTTGAAAAAGTGAAATTTGCTCAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>296 237 205 122 108 32</canonical_bands>
                <polymorphic_bands>418 237 205 108 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAATATTGCCCAAGGATGATA</pcr_primer_p1>
		<pcr_primer_p2>TCAAAATAGTAAATCAAGGTTGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAATATTGCCCAAGGATGATAGCCCGATGGTTTTCGATGAAATCCAATCTTTCAAAAATTCTTCGGACCGCGGAACACACACAATGGTGTTAATGACGCAAGCTAATTGTCACATATTCAGCTGCTCATACAGGCTTTTCTTTTCTTCCCCCAATCAGTCACCCCGTTTGTGTGATGGGCCATAAAATTAGGACGGAATTGCGTTAGGGGCAGCATCACCATCTGCACAACCTTGATTTACTATTTTGA</canonical_amplicon>
		<polymorphic_amplicon>TAAATATTGCCCAAGGATGATAGCCCGATGGTTTTCGATGAAATCCAATCTTTCAAAAATTCTTCGGACCGCGGAACACACACAATGGTGTYAATGACGCAAGCTAATTGTCACATATTCAGCTGCTCATACAGGCTTTTCTTTTCTTCCCCCAATCAGTCACCCCGTTTGTGTGATGGGCCATAAAATTAGGACGGAATTGCGTTAGGGGCAGCATCACCATCTGCACAACCTTGATTTACTATTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20226</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>299854</contig_pos>
        <strand>+</strand>
        <context>ATACATTTTR[A/G]AGGGGTCCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTTATCTCGTGAGGAGGCAATACAGTACTCCATACTTGATACATTTTA</left_flank>
        <right_flank>AGGGGTCCAGATGATGGCGCGCGCGCGGTTAATTGACCTTCCCCATCATC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAACTTATTTCCCTGGAGCGAAAATTTCAATCCAAACAGTATTTGTCGATTGCCGAGCGTGCCGAGTTCAGCGCGTCGTTGCAATTAACGGAGACGCAAGTCAAGATATGGTTCCAGGTTAGTCAATCTGACAGTATCCCCACACAAACGTAGATCATAAAATAGATCATAATCAAATCAATCGGCACGCGTATTTCATATAATTATAGTGTTTGCCGTTCCTTGATGCATAGATAACAGCCATATTACGACCTTCACGCCTTTCTGTAACGTTATAGATCCCAAGGCGTGATTTTGTGCACCTGGTGTTCCTAATAAGATGGTATCTATGAAAGGAAAGAGCCGACTTTTTTGCTCATCCATTTTTTTGCGAGATCTATAGATACCTTAAAAGTGACTAACAATAACTGACACTTTCCACTCATCAACCGACTGTTGTGCCAGCTGTCTTTTATCTCGTGAGGAGGCAATACAGTACTCCATACTTGATACATTTTAAAGGGGTCCAGATGATGGCGCGCGCGCGGTTAATTGACCTTCCCCATCATCACGTAATTGGTAAATATTGCCCAAGGATGATAGCCCGATGGTTTTCGATGAAATCCAATCTTTCAAAAATTCTTCGGACCGCGGAACACACACAATGGTGTTAATGACGCAAGCTAATTGTCACATATTCAGCTGCTCATACAGGCTTTTCTTTTCTTCCCCCAATCAGTCACCCCGTTTGTGTGATGGGCCATAAAATTAGGACGGAATTGCGTTAGGGGCAGCATCACCATCTGCACAACCTTGATTTACTATTTTGAGAGAGATTCATACCTGTCATTTATTTCGCGCTTAGCTACAATATCTTATACATACATTCACATACCAAAAACATCTGAAGGTCGGCGTTGGTGTCAAAACTGTCAAACACTCTGCTTTCCCTCATTCATTGAGGTCTTAATGATATGATAAATGATCTAGAAGATTGCGGAATTTGGCAATGAAAATATT</canonical>
            <polymorphic>GCAACTTATTTCCCTGGAGCGAAAATTTCAATCCAAACAGTATTTGTCGATTGCCGAGCGTGCCGAGTTCAGCGCGTCGTTGCAATTAACGGAGACGCAAGTCAAGATATGGTTCCAGGTTAGTCAATCTGACAGTATCCCCACACAAACGTAGATCATAAAATAGATCATAATCAAATCAATCGGCACGCGTATTTCATATAATTATAGTGTTTGCCGTTCCTTGATGCATAGATAACAGCCATATTACGACCTTCACGCCTTTCTGTAACGTTATAGATCCCAAGGCGTGATTTTGTGCACCTGGTGTTCCTAATAAGATGGTATCTATGAAAGGAAAGAGCCGACTTTTTTGCTCATCCATTTTTTTGCGAGATCTATAGATACCTTAAAAGTGACTAACAATAACTGACACTTTCCACTCATCAACCGACTGTTGTGCCAGCTGTCTTTTATCTCGTGAGGAGGCAATACAGTACTCCATACTTGATACATTTTARAGGGGTCCAGATGATGGCGCGCGCGCGGTTAATTGACCTTCCCCATCATCACGTAATTGGTAAATATTGCCCAAGGATGATAGCCCGATGGTTTTCGATGAAATCCAATCTTTCAAAAATTCTTCGGACCGCGGAACACACACAATGGTGTTAATGACGCAAGCTAATTGTCACATATTCAGCTGCTCATACAGGCTTTTCTTTTCTTCCCCCAATCAGTCACCCCGTTTGTGTGATGGGCCATAAAATTAGGACGGAATTGCGTTAGGGGCAGCATCACCATCTGCACAACCTTGATTTACTATTTTGAGAGAGATTCATACCTGTCATTTATTTCGCGCTTAGCTACAATATCTTATACATACATTCACATACCAAAAACATCTGAAGGTCGGCGTTGGTGTCAAAACTGTCAAACACTCTGCTTTCCCTCATTCATTGAGGTCTTAATGATATGATAAATGATCTAGAAGATTGCGGAATTTGGCAATGAAAATATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>303 296 122 108 86 53 32</canonical_bands>
                <polymorphic_bands>303 296 140 122 86 53</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGATGGTATCTATGAAAGGAAAG</pcr_primer_p1>
		<pcr_primer_p2>TATTTACCAATTACGTGATGATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGATGGTATCTATGAAAGGAAAGAGCCGACTTTTTTGCTCATCCATTTTTTTGCGAGATCTATAGATACCTTAAAAGTGACTAACAATAACTGACACTTTCCACTCATCAACCGACTGTTGTGCCAGCTGTCTTTTATCTCGTGAGGAGGCAATACAGTACTCCATACTTGATACATTTTAAAGGGGTCCAGATGATGGCGCGCGCGCGGTTAATTGACCTTCCCCATCATCACGTAATTGGTAAATA</canonical_amplicon>
		<polymorphic_amplicon>AAGATGGTATCTATGAAAGGAAAGAGCCGACTTTTTTGCTCATCCATTTTTTTGCGAGATCTATAGATACCTTAAAAGTGACTAACAATAACTGACACTTTCCACTCATCAACCGACTGTTGTGCCAGCTGTCTTTTATCTCGTGAGGAGGCAATACAGTACTCCATACTTGATACATTTTARAGGGGTCCAGATGATGGCGCGCGCGCGGTTAATTGACCTTCCCCATCATCACGTAATTGGTAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20227</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>299853</contig_pos>
        <strand>+</strand>
        <context>GATACATTTT[A/G]RAGGGGTCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTTTATCTCGTGAGGAGGCAATACAGTACTCCATACTTGATACATTTT</left_flank>
        <right_flank>AAGGGGTCCAGATGATGGCGCGCGCGCGGTTAATTGACCTTCCCCATCAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCAACTTATTTCCCTGGAGCGAAAATTTCAATCCAAACAGTATTTGTCGATTGCCGAGCGTGCCGAGTTCAGCGCGTCGTTGCAATTAACGGAGACGCAAGTCAAGATATGGTTCCAGGTTAGTCAATCTGACAGTATCCCCACACAAACGTAGATCATAAAATAGATCATAATCAAATCAATCGGCACGCGTATTTCATATAATTATAGTGTTTGCCGTTCCTTGATGCATAGATAACAGCCATATTACGACCTTCACGCCTTTCTGTAACGTTATAGATCCCAAGGCGTGATTTTGTGCACCTGGTGTTCCTAATAAGATGGTATCTATGAAAGGAAAGAGCCGACTTTTTTGCTCATCCATTTTTTTGCGAGATCTATAGATACCTTAAAAGTGACTAACAATAACTGACACTTTCCACTCATCAACCGACTGTTGTGCCAGCTGTCTTTTATCTCGTGAGGAGGCAATACAGTACTCCATACTTGATACATTTTAAAGGGGTCCAGATGATGGCGCGCGCGCGGTTAATTGACCTTCCCCATCATCACGTAATTGGTAAATATTGCCCAAGGATGATAGCCCGATGGTTTTCGATGAAATCCAATCTTTCAAAAATTCTTCGGACCGCGGAACACACACAATGGTGTTAATGACGCAAGCTAATTGTCACATATTCAGCTGCTCATACAGGCTTTTCTTTTCTTCCCCCAATCAGTCACCCCGTTTGTGTGATGGGCCATAAAATTAGGACGGAATTGCGTTAGGGGCAGCATCACCATCTGCACAACCTTGATTTACTATTTTGAGAGAGATTCATACCTGTCATTTATTTCGCGCTTAGCTACAATATCTTATACATACATTCACATACCAAAAACATCTGAAGGTCGGCGTTGGTGTCAAAACTGTCAAACACTCTGCTTTCCCTCATTCATTGAGGTCTTAATGATATGATAAATGATCTAGAAGATTGCGGAATTTGGCAATGAAAATAT</canonical>
            <polymorphic>AGCAACTTATTTCCCTGGAGCGAAAATTTCAATCCAAACAGTATTTGTCGATTGCCGAGCGTGCCGAGTTCAGCGCGTCGTTGCAATTAACGGAGACGCAAGTCAAGATATGGTTCCAGGTTAGTCAATCTGACAGTATCCCCACACAAACGTAGATCATAAAATAGATCATAATCAAATCAATCGGCACGCGTATTTCATATAATTATAGTGTTTGCCGTTCCTTGATGCATAGATAACAGCCATATTACGACCTTCACGCCTTTCTGTAACGTTATAGATCCCAAGGCGTGATTTTGTGCACCTGGTGTTCCTAATAAGATGGTATCTATGAAAGGAAAGAGCCGACTTTTTTGCTCATCCATTTTTTTGCGAGATCTATAGATACCTTAAAAGTGACTAACAATAACTGACACTTTCCACTCATCAACCGACTGTTGTGCCAGCTGTCTTTTATCTCGTGAGGAGGCAATACAGTACTCCATACTTGATACATTTTRAAGGGGTCCAGATGATGGCGCGCGCGCGGTTAATTGACCTTCCCCATCATCACGTAATTGGTAAATATTGCCCAAGGATGATAGCCCGATGGTTTTCGATGAAATCCAATCTTTCAAAAATTCTTCGGACCGCGGAACACACACAATGGTGTTAATGACGCAAGCTAATTGTCACATATTCAGCTGCTCATACAGGCTTTTCTTTTCTTCCCCCAATCAGTCACCCCGTTTGTGTGATGGGCCATAAAATTAGGACGGAATTGCGTTAGGGGCAGCATCACCATCTGCACAACCTTGATTTACTATTTTGAGAGAGATTCATACCTGTCATTTATTTCGCGCTTAGCTACAATATCTTATACATACATTCACATACCAAAAACATCTGAAGGTCGGCGTTGGTGTCAAAACTGTCAAACACTCTGCTTTCCCTCATTCATTGAGGTCTTAATGATATGATAAATGATCTAGAAGATTGCGGAATTTGGCAATGAAAATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>303 296 122 108 87 52 32</canonical_bands>
                <polymorphic_bands>303 296 140 122 87 52</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGATGGTATCTATGAAAGGAAAG</pcr_primer_p1>
		<pcr_primer_p2>TATTTACCAATTACGTGATGATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGATGGTATCTATGAAAGGAAAGAGCCGACTTTTTTGCTCATCCATTTTTTTGCGAGATCTATAGATACCTTAAAAGTGACTAACAATAACTGACACTTTCCACTCATCAACCGACTGTTGTGCCAGCTGTCTTTTATCTCGTGAGGAGGCAATACAGTACTCCATACTTGATACATTTTAAAGGGGTCCAGATGATGGCGCGCGCGCGGTTAATTGACCTTCCCCATCATCACGTAATTGGTAAATA</canonical_amplicon>
		<polymorphic_amplicon>AAGATGGTATCTATGAAAGGAAAGAGCCGACTTTTTTGCTCATCCATTTTTTTGCGAGATCTATAGATACCTTAAAAGTGACTAACAATAACTGACACTTTCCACTCATCAACCGACTGTTGTGCCAGCTGTCTTTTATCTCGTGAGGAGGCAATACAGTACTCCATACTTGATACATTTTRAAGGGGTCCAGATGATGGCGCGCGCGCGGTTAATTGACCTTCCCCATCATCACGTAATTGGTAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20229</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>318907</contig_pos>
        <strand>+</strand>
        <context>TACATTTTTA[C/T]TCTTATTATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGAAAAATAAGTTTTTGTGTATCTCATCAACATGTACTGTACATTTTTA</left_flank>
        <right_flank>TCTTATTATTAGTTAGATAATAATTTGATTAGATCAGCCTTGGGGTCCGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCTTCAGTTTCTACCGCTATGTTTCACTCACAGTACCGGTCATTAAGAAATACAAAAACGTATATTTCAGTTGATTTTGACCATTTTCAAAAGTCTAGAGCTCGGCTTTTAAGTTTGCGATCCCTTTGGAAGTTATGGAACGTATGAAACAGATCTAGATTGAACATTTTGTTTTAACTTTCAAAAATTTTGCGAATTTTTGAAAAATTTCTAGTTTTTCAGATGGATGCCTATTTCTGAAAAACACCCGTTTTTTCACGTTTTCAGGACAATGGACTGAGAAGGGGTGTCCTTCAGAAATTGGCAAAAAGCTGAAAAACTAGGAATGTTCGAAAATTATGTAAACGCAAATTGTTCAATCTAGGTCTGTTTTACATCCTCCAAAATTTTCAAAGTGATCGGAAAATTGACAACCAAGTTCCAGATCCCTAAAATACCTAAAATCAAGTGAAAAATAAGTTTTTGTGTATCTCATCAACATGTACTGTACATTTTTATTCTTATTATTAGTTAGATAATAATTTGATTAGATCAGCCTTGGGGTCCGATCGGCGTAGACAATGGTTCAATAAACAATAAAAAAGAATTTCGTGCCAAAAAATTTTTCAACATTTTCTCAAAATCAAAATTTCATATTTCAAGCTAAAATTTTTTTGAATTTTTCAGGCCACAAGCATGTACTCTCAAATTTTGGCGACAACTCTACTAATTTCCTTCATTGTGATAGCTAATCAATGTGCTGCCACGGGTGGCACCACCACTCCAACTAGTAAGTTTTTGATGTACAGTAATCTATGCAAAAATTCCTAATTTTTCAGCCACCACCACCGCCACAGTGACAACAACCGCAGCACCTACCACGACAGTAGCCACGGGTAAAACTCGCTTTTTTTTTGTTAATGAAGTTTTCCAAGTTTTCCTTCGAATCCTTTCCTCTTATTTCCACGCAGACAAATTCCAATTTGTCGTCCCCTCTGACCTCTTGTATTCCAATCAAA</canonical>
            <polymorphic>AAGCTTCAGTTTCTACCGCTATGTTTCACTCACAGTACCGGTCATTAAGAAATACAAAAACGTATATTTCAGTTGATTTTGACCATTTTCAAAAGTCTAGAGCTCGGCTTTTAAGTTTGCGATCCCTTTGGAAGTTATGGAACGTATGAAACAGATCTAGATTGAACATTTTGTTTTAACTTTCAAAAATTTTGCGAATTTTTGAAAAATTTCTAGTTTTTCAGATGGATGCCTATTTCTGAAAAACACCCGTTTTTTCACGTTTTCAGGACAATGGACTGAGAAGGGGTGTCCTTCAGAAATTGGCAAAAAGCTGAAAAACTAGGAATGTTCGAAAATTATGTAAACGCAAATTGTTCAATCTAGGTCTGTTTTACATCCTCCAAAATTTTCAAAGTGATCGGAAAATTGACAACCAAGTTCCAGATCCCTAAAATACCTAAAATCAAGTGAAAAATAAGTTTTTGTGTATCTCATCAACATGTACTGTACATTTTTAYTCTTATTATTAGTTAGATAATAATTTGATTAGATCAGCCTTGGGGTCCGATCGGCGTAGACAATGGTTCAATAAACAATAAAAAAGAATTTCGTGCCAAAAAATTTTTCAACATTTTCTCAAAATCAAAATTTCATATTTCAAGCTAAAATTTTTTTGAATTTTTCAGGCCACAAGCATGTACTCTCAAATTTTGGCGACAACTCTACTAATTTCCTTCATTGTGATAGCTAATCAATGTGCTGCCACGGGTGGCACCACCACTCCAACTAGTAAGTTTTTGATGTACAGTAATCTATGCAAAAATTCCTAATTTTTCAGCCACCACCACCGCCACAGTGACAACAACCGCAGCACCTACCACGACAGTAGCCACGGGTAAAACTCGCTTTTTTTTTGTTAATGAAGTTTTCCAAGTTTTCCTTCGAATCCTTTCCTCTTATTTCCACGCAGACAAATTCCAATTTGTCGTCCCCTCTGACCTCTTGTATTCCAATCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTCTACCGCTATGTTTCACT</pcr_primer_p1>
		<pcr_primer_p2>TGATTTTGAGAAAATGTTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>619</pcr_amplicon_size>
		<canonical_amplicon>GTTTCTACCGCTATGTTTCACTCACAGTACCGGTCATTAAGAAATACAAAAACGTATATTTCAGTTGATTTTGACCATTTTCAAAAGTCTAGAGCTCGGCTTTTAAGTTTGCGATCCCTTTGGAAGTTATGGAACGTATGAAACAGATCTAGATTGAACATTTTGTTTTAACTTTCAAAAATTTTGCGAATTTTTGAAAAATTTCTAGTTTTTCAGATGGATGCCTATTTCTGAAAAACACCCGTTTTTTCACGTTTTCAGGACAATGGACTGAGAAGGGGTGTCCTTCAGAAATTGGCAAAAAGCTGAAAAACTAGGAATGTTCGAAAATTATGTAAACGCAAATTGTTCAATCTAGGTCTGTTTTACATCCTCCAAAATTTTCAAAGTGATCGGAAAATTGACAACCAAGTTCCAGATCCCTAAAATACCTAAAATCAAGTGAAAAATAAGTTTTTGTGTATCTCATCAACATGTACTGTACATTTTTATTCTTATTATTAGTTAGATAATAATTTGATTAGATCAGCCTTGGGGTCCGATCGGCGTAGACAATGGTTCAATAAACAATAAAAAAGAATTTCGTGCCAAAAAATTTTTCAACATTTTCTCAAAATCA</canonical_amplicon>
		<polymorphic_amplicon>GTTTCTACCGCTATGTTTCACTCACAGTACCGGTCATTAAGAAATACAAAAACGTATATTTCAGTTGATTTTGACCATTTTCAAAAGTCTAGAGCTCGGCTTTTAAGTTTGCGATCCCTTTGGAAGTTATGGAACGTATGAAACAGATCTAGATTGAACATTTTGTTTTAACTTTCAAAAATTTTGCGAATTTTTGAAAAATTTCTAGTTTTTCAGATGGATGCCTATTTCTGAAAAACACCCGTTTTTTCACGTTTTCAGGACAATGGACTGAGAAGGGGTGTCCTTCAGAAATTGGCAAAAAGCTGAAAAACTAGGAATGTTCGAAAATTATGTAAACGCAAATTGTTCAATCTAGGTCTGTTTTACATCCTCCAAAATTTTCAAAGTGATCGGAAAATTGACAACCAAGTTCCAGATCCCTAAAATACCTAAAATCAAGTGAAAAATAAGTTTTTGTGTATCTCATCAACATGTACTGTACATTTTTAYTCTTATTATTAGTTAGATAATAATTTGATTAGATCAGCCTTGGGGTCCGATCGGCGTAGACAATGGTTCAATAAACAATAAAAAAGAATTTCGTGCCAAAAAATTTTTCAACATTTTCTCAAAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20230</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>318983</contig_pos>
        <strand>+</strand>
        <context>GTTCAATAAA[A/C]AATAAAAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGATTAGATCAGCCTTGGGGTCCGATCGGCGTAGACAATGGTTCAATAAA</left_flank>
        <right_flank>AATAAAAAAGAATTTCGTGCCAAAAAATTTTTCAACATTTTCTCAAAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGACCATTTTCAAAAGTCTAGAGCTCGGCTTTTAAGTTTGCGATCCCTTTGGAAGTTATGGAACGTATGAAACAGATCTAGATTGAACATTTTGTTTTAACTTTCAAAAATTTTGCGAATTTTTGAAAAATTTCTAGTTTTTCAGATGGATGCCTATTTCTGAAAAACACCCGTTTTTTCACGTTTTCAGGACAATGGACTGAGAAGGGGTGTCCTTCAGAAATTGGCAAAAAGCTGAAAAACTAGGAATGTTCGAAAATTATGTAAACGCAAATTGTTCAATCTAGGTCTGTTTTACATCCTCCAAAATTTTCAAAGTGATCGGAAAATTGACAACCAAGTTCCAGATCCCTAAAATACCTAAAATCAAGTGAAAAATAAGTTTTTGTGTATCTCATCAACATGTACTGTACATTTTTATTCTTATTATTAGTTAGATAATAATTTGATTAGATCAGCCTTGGGGTCCGATCGGCGTAGACAATGGTTCAATAAACAATAAAAAAGAATTTCGTGCCAAAAAATTTTTCAACATTTTCTCAAAATCAAAATTTCATATTTCAAGCTAAAATTTTTTTGAATTTTTCAGGCCACAAGCATGTACTCTCAAATTTTGGCGACAACTCTACTAATTTCCTTCATTGTGATAGCTAATCAATGTGCTGCCACGGGTGGCACCACCACTCCAACTAGTAAGTTTTTGATGTACAGTAATCTATGCAAAAATTCCTAATTTTTCAGCCACCACCACCGCCACAGTGACAACAACCGCAGCACCTACCACGACAGTAGCCACGGGTAAAACTCGCTTTTTTTTTGTTAATGAAGTTTTCCAAGTTTTCCTTCGAATCCTTTCCTCTTATTTCCACGCAGACAAATTCCAATTTGTCGTCCCCTCTGACCTCTTGTATTCCAATCAAATGTGGTAGAAAGGAAGAAAGAATTAGAAGTGGTAAAGACATATGCGTATAAATACGTTCTTACTGTTTTGGGTCAA</canonical>
            <polymorphic>TTTTGACCATTTTCAAAAGTCTAGAGCTCGGCTTTTAAGTTTGCGATCCCTTTGGAAGTTATGGAACGTATGAAACAGATCTAGATTGAACATTTTGTTTTAACTTTCAAAAATTTTGCGAATTTTTGAAAAATTTCTAGTTTTTCAGATGGATGCCTATTTCTGAAAAACACCCGTTTTTTCACGTTTTCAGGACAATGGACTGAGAAGGGGTGTCCTTCAGAAATTGGCAAAAAGCTGAAAAACTAGGAATGTTCGAAAATTATGTAAACGCAAATTGTTCAATCTAGGTCTGTTTTACATCCTCCAAAATTTTCAAAGTGATCGGAAAATTGACAACCAAGTTCCAGATCCCTAAAATACCTAAAATCAAGTGAAAAATAAGTTTTTGTGTATCTCATCAACATGTACTGTACATTTTTATTCTTATTATTAGTTAGATAATAATTTGATTAGATCAGCCTTGGGGTCCGATCGGCGTAGACAATGGTTCAATAAAMAATAAAAAAGAATTTCGTGCCAAAAAATTTTTCAACATTTTCTCAAAATCAAAATTTCATATTTCAAGCTAAAATTTTTTTGAATTTTTCAGGCCACAAGCATGTACTCTCAAATTTTGGCGACAACTCTACTAATTTCCTTCATTGTGATAGCTAATCAATGTGCTGCCACGGGTGGCACCACCACTCCAACTAGTAAGTTTTTGATGTACAGTAATCTATGCAAAAATTCCTAATTTTTCAGCCACCACCACCGCCACAGTGACAACAACCGCAGCACCTACCACGACAGTAGCCACGGGTAAAACTCGCTTTTTTTTTGTTAATGAAGTTTTCCAAGTTTTCCTTCGAATCCTTTCCTCTTATTTCCACGCAGACAAATTCCAATTTGTCGTCCCCTCTGACCTCTTGTATTCCAATCAAATGTGGTAGAAAGGAAGAAAGAATTAGAAGTGGTAAAGACATATGCGTATAAATACGTTCTTACTGTTTTGGGTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTCTACCGCTATGTTTCACT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGATTTTGAGAAAATGTTG</pcr_primer_p2>
		<pcr_amplicon_size>623</pcr_amplicon_size>
		<canonical_amplicon>ACAATAAAAAAGAATTTCGTGCCAAAAAATTTTTCAACATTTTCTCAAAATCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AMAATAAAAAAGAATTTCGTGCCAAAAAATTTTTCAACATTTTCTCAAAATCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20263</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>320126</contig_pos>
        <strand></strand>
        <context>gtcacttgac[G/A]gccgagctct</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTAGGTTAGTTCTGTTTTATAACCTACAAAAATGATCGGTCACTTGAC</left_flank>
        <right_flank>GCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAACACTCTTGT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTACTGACGAAGGTGTTGATGCTAACGGATGCGCTACCATCACTTATACCTGTGAACGGACGCCGCAGGTGGCCACGGATGTTGTCTTGATTACTGTAAGTGGGATTTCAGATTTATCTATTAACTAACAAAGTGTTGATATCTGAAATAGAAAACGAGATACGGTGCCGGTCAAAAAGATGTATAACAACGTGTTTTTCAGTTGATTTTCAGTCAGTTTGACAATGTTCAGGAGTCTAGAGCTCGGCTGTCAAAGACCCAAGATTAAAAAATTTGCATTTACAAAACTTTTTAGAAGTTCCTTGTTTTTCAGTTATTTGCTAATTTCTGAAGGACACCGCATTTTTCCACTTTTGGTGCTGAAAACGCGAAAAAGGGAGGTATTCTTCATAAATCGGCAGATAAATAAAAAACTAGAAATTTTCAAAAATTTTTGTGAATGTAAAGTTTTTAGGTTAGTTCTGTTTTATAACCTACAAAAATGATCGGTCACTTGACGGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAACACTCTTGTCCGGTGCTTATGAACCTTATGGCCGAAAATTTCTTTAAAGGCGCATAGCAAGTTATGAAAAGGAAGCGGCTACAATTTAGTCAGGTAAATTTGTGCGCCTTACTACAGTAACTAGGAATTATTTTATTTTGGCCTATTTTAGGCAGTTTTCCTATTTAATAAGAAAATTCAGCTGATTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGT</canonical>
            <polymorphic>CTTACTGACGAAGGTGTTGATGCTAACGGATGCGCTACCATCACTTATACCTGTGAACGGACGCCGCAGGTGGCCACGGATGTTGTCTTGATTACTGTAAGTGGGATTTCAGATTTATCTATTAACTAACAAAGTGTTGATATCTGAAATAGAAAACGAGATACGGTGCCGGTCAAAAAGATGTATAACAACGTGTTTTTCAGTTGATTTTCAGTCAGTTTGACAATGTTCAGGAGTCTAGAGCTCGGCTGTCAAAGACCCAAGATTAAAAAATTTGCATTTACAAAACTTTTTAGAAGTTCCTTGTTTTTCAGTTATTTGCTAATTTCTGAAGGACACCGCATTTTTCCACTTTTGGTGCTGAAAACGCGAAAAAGGGAGGTATTCTTCATAAATCGGCAGATAAATAAAAAACTAGAAATTTTCAAAAATTTTTGTGAATGTAAAGTTTTTAGGTTAGTTCTGTTTTATAACCTACAAAAATGATCGGTCACTTGACRGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAACACTCTTGTCCGGTGCTTATGAACCTTATGGCCGAAAATTTCTTTAAAGGCGCATAGCAAGTTATGAAAAGGAAGCGGCTACAATTTAGTCAGGTAAATTTGTGCGCCTTACTACAGTAACTAGGAATTATTTTATTTTGGCCTATTTTAGGCAGTTTTCCTATTTAATAAGAAAATTCAGCTGATTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CGGCCG</site>
                <isoschizomers>
                    <enzyme>BseX3I</enzyme>
                    <enzyme>BstZI</enzyme>
                    <enzyme>EagI</enzyme>
                    <enzyme>EclXI</enzyme>
                    <enzyme>Eco52I</enzyme>
                    <enzyme>XmaIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>428 318 110 73 71</canonical_bands>
                <polymorphic_bands>499 318 110 73</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>430 428 71 71</canonical_bands>
                <polymorphic_bands>499 430 71</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>278 253 170 73 63 47 42 40 24 5 5</canonical_bands>
                <polymorphic_bands>278 258 170 73 63 47 42 40 24 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATATCTGAAATAGAAAACGAGAT</pcr_primer_p1>
		<pcr_primer_p2>ACACAATTCATCACCACATTC</pcr_primer_p2>
		<pcr_amplicon_size>911</pcr_amplicon_size>
		<canonical_amplicon>TGATATCTGAAATAGAAAACGAGATACGGTGCCGGTCAAAAAGATGTATAACAACGTGTTTTTCAGTTGATTTTCAGTCAGTTTGACAATGTTCAGGAGTCTAGAGCTCGGCTGTCAAAGACCCAAGATTAAAAAATTTGCATTTACAAAACTTTTTAGAAGTTCCTTGTTTTTCAGTTATTTGCTAATTTCTGAAGGACACCGCATTTTTCCACTTTTGGTGCTGAAAACGCGAAAAAGGGAGGTATTCTTCATAAATCGGCAGATAAATAAAAAACTAGAAATTTTCAAAAATTTTTGTGAATGTAAAGTTTTTAGGTTAGTTCTGTTTTATAACCTACAAAAATGATCGGTCACTTGACGGCCGAGCTCTTACATTCTAC</canonical_amplicon>
		<polymorphic_amplicon>TGATATCTGAAATAGAAAACGAGATACGGTGCCGGTCAAAAAGATGTATAACAACGTGTTTTTCAGTTGATTTTCAGTCAGTTTGACAATGTTCAGGAGTCTAGAGCTCGGCTGTCAAAGACCCAAGATTAAAAAATTTGCATTTACAAAACTTTTTAGAAGTTCCTTGTTTTTCAGTTATTTGCTAATTTCTGAAGGACACCGCATTTTTCCACTTTTGGTGCTGAAAACGCGAAAAAGGGAGGTATTCTTCATAAATCGGCAGATAAATAAAAAACTAGAAATTTTCAAAAATTTTTGTGAATGTAAAGTTTTTAGGTTAGTTCTGTTTTATAACCTACAAAAATGATCGGTCACTTGACRGCCGAGCTCTTACATTCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20264</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>320614</contig_pos>
        <strand></strand>
        <context>GACARCGAGA[A/C]TCCAAGAGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGA</left_flank>
        <right_flank>TCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTCACTTGACGGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAACACTCTTGTCCGGTGCTTATGAACCTTATGGCCGAAAATTTCTTTAAAGGCGCATAGCAAGTTATGAAAAGGAAGCGGCTACAATTTAGTCAGGTAAATTTGTGCGCCTTACTACAGTAACTAGGAATTATTTTATTTTGGCCTATTTTAGGCAGTTTTCCTATTTAATAAGAAAATTCAGCTGATTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGTGGATGGTAACTGGGTGAAAGATGGTATTGTCATCAATGAGGTTGAGTGCCAAATCATTACCTAGACGGAATTTTAAGCCTCCAAAATGCTCAATATCACGGACACTAGGGATTGATGATAAGAAACCATTAACATTTATAATAATAATTAATCAAATTTTCATAATACTGATATTAATAATAACCATTCCTATAATAATAATATTAATTAATAAGCATTACTAACCCTAATGAATATTTCTTTGGTAATTTTTGAACTCCATTTCTCCTTTTTTCCAAGAAGTTGACTATACTTCATCATTACCTTTGTTTTCTCTGCTGGTTTCTTATTTTCTCTATGTATTGGTTGGTTGGTGTCCTAGTACCATTTGAGTTTCAGCATGCATCCACTTTTCACGCACCTTTTAGCTTTCACTTTTGCGTTGAAAACAGCTGAAGCAT</canonical>
            <polymorphic>GGTCACTTGACGGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAACACTCTTGTCCGGTGCTTATGAACCTTATGGCCGAAAATTTCTTTAAAGGCGCATAGCAAGTTATGAAAAGGAAGCGGCTACAATTTAGTCAGGTAAATTTGTGCGCCTTACTACAGTAACTAGGAATTATTTTATTTTGGCCTATTTTAGGCAGTTTTCCTATTTAATAAGAAAATTCAGCTGATTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAMTCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGTGGATGGTAACTGGGTGAAAGATGGTATTGTCATCAATGAGGTTGAGTGCCAAATCATTACCTAGACGGAATTTTAAGCCTCCAAAATGCTCAATATCACGGACACTAGGGATTGATGATAAGAAACCATTAACATTTATAATAATAATTAATCAAATTTTCATAATACTGATATTAATAATAACCATTCCTATAATAATAATATTAATTAATAAGCATTACTAACCCTAATGAATATTTCTTTGGTAATTTTTGAACTCCATTTCTCCTTTTTTCCAAGAAGTTGACTATACTTCATCATTACCTTTGTTTTCTCTGCTGGTTTCTTATTTTCTCTATGTATTGGTTGGTTGGTGTCCTAGTACCATTTGAGTTTCAGCATGCATCCACTTTTCACGCACCTTTTAGCTTTCACTTTTGCGTTGAAAACAGCTGAAGCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 249 219 30</canonical_bands>
                <polymorphic_bands>721 249 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATATCTGAAATAGAAAACGAGAT</pcr_primer_p1>
		<pcr_primer_p2>ACACAATTCATCACCACATTC</pcr_primer_p2>
		<pcr_amplicon_size>911</pcr_amplicon_size>
		<canonical_amplicon>AATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGT</canonical_amplicon>
		<polymorphic_amplicon>AMTCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20265</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>320608</contig_pos>
        <strand>+</strand>
        <context>TACKCTGACA[A/G]CGAGAMTCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACA</left_flank>
        <right_flank>CGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGATCGGTCACTTGACGGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAACACTCTTGTCCGGTGCTTATGAACCTTATGGCCGAAAATTTCTTTAAAGGCGCATAGCAAGTTATGAAAAGGAAGCGGCTACAATTTAGTCAGGTAAATTTGTGCGCCTTACTACAGTAACTAGGAATTATTTTATTTTGGCCTATTTTAGGCAGTTTTCCTATTTAATAAGAAAATTCAGCTGATTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGTGGATGGTAACTGGGTGAAAGATGGTATTGTCATCAATGAGGTTGAGTGCCAAATCATTACCTAGACGGAATTTTAAGCCTCCAAAATGCTCAATATCACGGACACTAGGGATTGATGATAAGAAACCATTAACATTTATAATAATAATTAATCAAATTTTCATAATACTGATATTAATAATAACCATTCCTATAATAATAATATTAATTAATAAGCATTACTAACCCTAATGAATATTTCTTTGGTAATTTTTGAACTCCATTTCTCCTTTTTTCCAAGAAGTTGACTATACTTCATCATTACCTTTGTTTTCTCTGCTGGTTTCTTATTTTCTCTATGTATTGGTTGGTTGGTGTCCTAGTACCATTTGAGTTTCAGCATGCATCCACTTTTCACGCACCTTTTAGCTTTCACTTTTGCGTTGAAAACAGCTG</canonical>
            <polymorphic>ATGATCGGTCACTTGACGGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAACACTCTTGTCCGGTGCTTATGAACCTTATGGCCGAAAATTTCTTTAAAGGCGCATAGCAAGTTATGAAAAGGAAGCGGCTACAATTTAGTCAGGTAAATTTGTGCGCCTTACTACAGTAACTAGGAATTATTTTATTTTGGCCTATTTTAGGCAGTTTTCCTATTTAATAAGAAAATTCAGCTGATTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACARCGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGTGGATGGTAACTGGGTGAAAGATGGTATTGTCATCAATGAGGTTGAGTGCCAAATCATTACCTAGACGGAATTTTAAGCCTCCAAAATGCTCAATATCACGGACACTAGGGATTGATGATAAGAAACCATTAACATTTATAATAATAATTAATCAAATTTTCATAATACTGATATTAATAATAACCATTCCTATAATAATAATATTAATTAATAAGCATTACTAACCCTAATGAATATTTCTTTGGTAATTTTTGAACTCCATTTCTCCTTTTTTCCAAGAAGTTGACTATACTTCATCATTACCTTTGTTTTCTCTGCTGGTTTCTTATTTTCTCTATGTATTGGTTGGTTGGTGTCCTAGTACCATTTGAGTTTCAGCATGCATCCACTTTTCACGCACCTTTTAGCTTTCACTTTTGCGTTGAAAACAGCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATATCTGAAATAGAAAACGAGAT</pcr_primer_p1>
		<pcr_primer_p2>ACACAATTCATCACCACATTC</pcr_primer_p2>
		<pcr_amplicon_size>911</pcr_amplicon_size>
		<canonical_amplicon>AACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGT</canonical_amplicon>
		<polymorphic_amplicon>ARCGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20266</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>320601</contig_pos>
        <strand></strand>
        <context>TTAGTACTAC[T/G]CTGACARCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTAC</left_flank>
        <right_flank>CTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACG</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACAAAAATGATCGGTCACTTGACGGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAACACTCTTGTCCGGTGCTTATGAACCTTATGGCCGAAAATTTCTTTAAAGGCGCATAGCAAGTTATGAAAAGGAAGCGGCTACAATTTAGTCAGGTAAATTTGTGCGCCTTACTACAGTAACTAGGAATTATTTTATTTTGGCCTATTTTAGGCAGTTTTCCTATTTAATAAGAAAATTCAGCTGATTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGTGGATGGTAACTGGGTGAAAGATGGTATTGTCATCAATGAGGTTGAGTGCCAAATCATTACCTAGACGGAATTTTAAGCCTCCAAAATGCTCAATATCACGGACACTAGGGATTGATGATAAGAAACCATTAACATTTATAATAATAATTAATCAAATTTTCATAATACTGATATTAATAATAACCATTCCTATAATAATAATATTAATTAATAAGCATTACTAACCCTAATGAATATTTCTTTGGTAATTTTTGAACTCCATTTCTCCTTTTTTCCAAGAAGTTGACTATACTTCATCATTACCTTTGTTTTCTCTGCTGGTTTCTTATTTTCTCTATGTATTGGTTGGTTGGTGTCCTAGTACCATTTGAGTTTCAGCATGCATCCACTTTTCACGCACCTTTTAGCTTTCACTTTTGCGTTGAAA</canonical>
            <polymorphic>TACAAAAATGATCGGTCACTTGACGGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAACACTCTTGTCCGGTGCTTATGAACCTTATGGCCGAAAATTTCTTTAAAGGCGCATAGCAAGTTATGAAAAGGAAGCGGCTACAATTTAGTCAGGTAAATTTGTGCGCCTTACTACAGTAACTAGGAATTATTTTATTTTGGCCTATTTTAGGCAGTTTTCCTATTTAATAAGAAAATTCAGCTGATTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACKCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGTGGATGGTAACTGGGTGAAAGATGGTATTGTCATCAATGAGGTTGAGTGCCAAATCATTACCTAGACGGAATTTTAAGCCTCCAAAATGCTCAATATCACGGACACTAGGGATTGATGATAAGAAACCATTAACATTTATAATAATAATTAATCAAATTTTCATAATACTGATATTAATAATAACCATTCCTATAATAATAATATTAATTAATAAGCATTACTAACCCTAATGAATATTTCTTTGGTAATTTTTGAACTCCATTTCTCCTTTTTTCCAAGAAGTTGACTATACTTCATCATTACCTTTGTTTTCTCTGCTGGTTTCTTATTTTCTCTATGTATTGGTTGGTTGGTGTCCTAGTACCATTTGAGTTTCAGCATGCATCCACTTTTCACGCACCTTTTAGCTTTCACTTTTGCGTTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>498 267 96 79 60</canonical_bands>
                <polymorphic_bands>577 267 96 60</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATATCTGAAATAGAAAACGAGAT</pcr_primer_p1>
		<pcr_primer_p2>ACACAATTCATCACCACATTC</pcr_primer_p2>
		<pcr_amplicon_size>911</pcr_amplicon_size>
		<canonical_amplicon>CTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGT</canonical_amplicon>
		<polymorphic_amplicon>CKCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20276</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>331816</contig_pos>
        <strand>+</strand>
        <context>GAGAGTTCCT[A/T]GGAGCGGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTTTATGCATTTTGGGATTGTTGGACACTTGGTGGAGAGGAGAGTTCCT</left_flank>
        <right_flank>GGAGCGGATTTGCTTTGGGTTTCGGTCCTATTTATGACGACTGGATTAGT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCGGAGGTATGTATAACCTATCTATCCTGGGAGACACGCAAAAAGATATACGCAAACTGAAATTTGATACATATTTGTGTATGTTTTCAATTTCCAAAAATATTCATATGTATCGTGAAGTCATCAAACCCAATGATCGAAAAATGGAATTCCTCTTTTAGAACTTCTTTTTTAGATCCCTCAATCACTTCAACCGATGCACCAAGATACATTCTCGTAGTGGCACATGGTGTCCTTCTAGGATGTCTGGGACTTGCCTTCACCCTTTGTACCATGTCAGCTGTATTTGTTGGAACTTATCTTCAGCTTGACTTCCACTCAATGCACACTGAGACTAGCAAGAATCTTAAAATCACTACTGGGTAAAAAACAAATAACAAATGGAGCAACAAGGCCAAATTTCAGCGTGCTCAACATTCTCCACATCTTCTGGGGAGCTTGTATGCTGGCTTTATGCATTTTGGGATTGTTGGACACTTGGTGGAGAGGAGAGTTCCTTGGAGCGGATTTGCTTTGGGTTTCGGTCCTATTTATGACGACTGGATTAGTGACATGCAACAATCACACCGTTCTGATCACCACAAAATTCATCTTGTCCGTTGTCTGCCTTGGAATTTGTACCGAAAAAGTTTGCTCCTCCGCCAATTTGATCTACCAAATGGCCGCCTATCCAGCATACAGAAATGGGAATACAAGAACATTCGTTGGACAGATTATTTTGTACTCGATTCAAGCTGGTGTAAGTTGGAAGGAGAAGCATAGATAGAAAACTCAACAAGCCTATTTACCGTATTTGCTCAATTATCTCGGTTCCTTCAAAAAATACCAAATACTGGTCAACTGATAAATTCTTTATCATAACATATCCATATGTGTAAACTCAAATATCTCGGTTCCTGTGAGAGATATCAAAAATTTCTTCCACTGATGAAATGTTGGTGGTATTATGATAAACAGATTATATGAAATGATTCTTTTAAAAATTTCTAAAATTCCAGA</canonical>
            <polymorphic>CTCGGAGGTATGTATAACCTATCTATCCTGGGAGACACGCAAAAAGATATACGCAAACTGAAATTTGATACATATTTGTGTATGTTTTCAATTTCCAAAAATATTCATATGTATCGTGAAGTCATCAAACCCAATGATCGAAAAATGGAATTCCTCTTTTAGAACTTCTTTTTTAGATCCCTCAATCACTTCAACCGATGCACCAAGATACATTCTCGTAGTGGCACATGGTGTCCTTCTAGGATGTCTGGGACTTGCCTTCACCCTTTGTACCATGTCAGCTGTATTTGTTGGAACTTATCTTCAGCTTGACTTCCACTCAATGCACACTGAGACTAGCAAGAATCTTAAAATCACTACTGGGTAAAAAACAAATAACAAATGGAGCAACAAGGCCAAATTTCAGCGTGCTCAACATTCTCCACATCTTCTGGGGAGCTTGTATGCTGGCTTTATGCATTTTGGGATTGTTGGACACTTGGTGGAGAGGAGAGTTCCTWGGAGCGGATTTGCTTTGGGTTTCGGTCCTATTTATGACGACTGGATTAGTGACATGCAACAATCACACCGTTCTGATCACCACAAAATTCATCTTGTCCGTTGTCTGCCTTGGAATTTGTACCGAAAAAGTTTGCTCCTCCGCCAATTTGATCTACCAAATGGCCGCCTATCCAGCATACAGAAATGGGAATACAAGAACATTCGTTGGACAGATTATTTTGTACTCGATTCAAGCTGGTGTAAGTTGGAAGGAGAAGCATAGATAGAAAACTCAACAAGCCTATTTACCGTATTTGCTCAATTATCTCGGTTCCTTCAAAAAATACCAAATACTGGTCAACTGATAAATTCTTTATCATAACATATCCATATGTGTAAACTCAAATATCTCGGTTCCTGTGAGAGATATCAAAAATTTCTTCCACTGATGAAATGTTGGTGGTATTATGATAAACAGATTATATGAAATGATTCTTTTAAAAATTTCTAAAATTCCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>497 392 111</canonical_bands>
                <polymorphic_bands>608 392</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTATGCATTTTGGGATTG</pcr_primer_p1>
		<pcr_primer_p2>GTTCTTGTATTCCCATTTCTGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTATGCATTTTGGGATTGTTGGACACTTGGTGGAGAGGAGAGTTCCTTGGAGCGGATTTGCTTTGGGTTTCGGTCCTATTTATGACGACTGGATTAGTGACATGCAACAATCACACCGTTCTGATCACCACAAAATTCATCTTGTCCGTTGTCTGCCTTGGAATTTGTACCGAAAAAGTTTGCTCCTCCGCCAATTTGATCTACCAAATGGCCGCCTATCCAGCATACAGAAATGGGAATACAAGAAC</canonical_amplicon>
		<polymorphic_amplicon>CTTTATGCATTTTGGGATTGTTGGACACTTGGTGGAGAGGAGAGTTCCTWGGAGCGGATTTGCTTTGGGTTTCGGTCCTATTTATGACGACTGGATTAGTGACATGCAACAATCACACCGTTCTGATCACCACAAAATTCATCTTGTCCGTTGTCTGCCTTGGAATTTGTACCGAAAAAGTTTGCTCCTCCGCCAATTTGATCTACCAAATGGCCGCCTATCCAGCATACAGAAATGGGAATACAAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20277</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>331843</contig_pos>
        <strand>+</strand>
        <context>GGGTTTCGGT[C/T]CTATTTATGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTTGGTGGAGAGGAGAGTTCCTTGGAGCGGATTTGCTTTGGGTTTCGGT</left_flank>
        <right_flank>CTATTTATGACGACTGGATTAGTGACATGCAACAATCACACCGTTCTGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGGGAGACACGCAAAAAGATATACGCAAACTGAAATTTGATACATATTTGTGTATGTTTTCAATTTCCAAAAATATTCATATGTATCGTGAAGTCATCAAACCCAATGATCGAAAAATGGAATTCCTCTTTTAGAACTTCTTTTTTAGATCCCTCAATCACTTCAACCGATGCACCAAGATACATTCTCGTAGTGGCACATGGTGTCCTTCTAGGATGTCTGGGACTTGCCTTCACCCTTTGTACCATGTCAGCTGTATTTGTTGGAACTTATCTTCAGCTTGACTTCCACTCAATGCACACTGAGACTAGCAAGAATCTTAAAATCACTACTGGGTAAAAAACAAATAACAAATGGAGCAACAAGGCCAAATTTCAGCGTGCTCAACATTCTCCACATCTTCTGGGGAGCTTGTATGCTGGCTTTATGCATTTTGGGATTGTTGGACACTTGGTGGAGAGGAGAGTTCCTTGGAGCGGATTTGCTTTGGGTTTCGGTCCTATTTATGACGACTGGATTAGTGACATGCAACAATCACACCGTTCTGATCACCACAAAATTCATCTTGTCCGTTGTCTGCCTTGGAATTTGTACCGAAAAAGTTTGCTCCTCCGCCAATTTGATCTACCAAATGGCCGCCTATCCAGCATACAGAAATGGGAATACAAGAACATTCGTTGGACAGATTATTTTGTACTCGATTCAAGCTGGTGTAAGTTGGAAGGAGAAGCATAGATAGAAAACTCAACAAGCCTATTTACCGTATTTGCTCAATTATCTCGGTTCCTTCAAAAAATACCAAATACTGGTCAACTGATAAATTCTTTATCATAACATATCCATATGTGTAAACTCAAATATCTCGGTTCCTGTGAGAGATATCAAAAATTTCTTCCACTGATGAAATGTTGGTGGTATTATGATAAACAGATTATATGAAATGATTCTTTTAAAAATTTCTAAAATTCCAGATATATCTCCTGGAAGGTCTTACATCTC</canonical>
            <polymorphic>CTGGGAGACACGCAAAAAGATATACGCAAACTGAAATTTGATACATATTTGTGTATGTTTTCAATTTCCAAAAATATTCATATGTATCGTGAAGTCATCAAACCCAATGATCGAAAAATGGAATTCCTCTTTTAGAACTTCTTTTTTAGATCCCTCAATCACTTCAACCGATGCACCAAGATACATTCTCGTAGTGGCACATGGTGTCCTTCTAGGATGTCTGGGACTTGCCTTCACCCTTTGTACCATGTCAGCTGTATTTGTTGGAACTTATCTTCAGCTTGACTTCCACTCAATGCACACTGAGACTAGCAAGAATCTTAAAATCACTACTGGGTAAAAAACAAATAACAAATGGAGCAACAAGGCCAAATTTCAGCGTGCTCAACATTCTCCACATCTTCTGGGGAGCTTGTATGCTGGCTTTATGCATTTTGGGATTGTTGGACACTTGGTGGAGAGGAGAGTTCCTTGGAGCGGATTTGCTTTGGGTTTCGGTYCTATTTATGACGACTGGATTAGTGACATGCAACAATCACACCGTTCTGATCACCACAAAATTCATCTTGTCCGTTGTCTGCCTTGGAATTTGTACCGAAAAAGTTTGCTCCTCCGCCAATTTGATCTACCAAATGGCCGCCTATCCAGCATACAGAAATGGGAATACAAGAACATTCGTTGGACAGATTATTTTGTACTCGATTCAAGCTGGTGTAAGTTGGAAGGAGAAGCATAGATAGAAAACTCAACAAGCCTATTTACCGTATTTGCTCAATTATCTCGGTTCCTTCAAAAAATACCAAATACTGGTCAACTGATAAATTCTTTATCATAACATATCCATATGTGTAAACTCAAATATCTCGGTTCCTGTGAGAGATATCAAAAATTTCTTCCACTGATGAAATGTTGGTGGTATTATGATAAACAGATTATATGAAATGATTCTTTTAAAAATTTCTAAAATTCCAGATATATCTCCTGGAAGGTCTTACATCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTATGCATTTTGGGATTG</pcr_primer_p1>
		<pcr_primer_p2>GTTCTTGTATTCCCATTTCTGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTATGCATTTTGGGATTGTTGGACACTTGGTGGAGAGGAGAGTTCCTTGGAGCGGATTTGCTTTGGGTTTCGGTCCTATTTATGACGACTGGATTAGTGACATGCAACAATCACACCGTTCTGATCACCACAAAATTCATCTTGTCCGTTGTCTGCCTTGGAATTTGTACCGAAAAAGTTTGCTCCTCCGCCAATTTGATCTACCAAATGGCCGCCTATCCAGCATACAGAAATGGGAATACAAGAAC</canonical_amplicon>
		<polymorphic_amplicon>CTTTATGCATTTTGGGATTGTTGGACACTTGGTGGAGAGGAGAGTTCCTTGGAGCGGATTTGCTTTGGGTTTCGGTYCTATTTATGACGACTGGATTAGTGACATGCAACAATCACACCGTTCTGATCACCACAAAATTCATCTTGTCCGTTGTCTGCCTTGGAATTTGTACCGAAAAAGTTTGCTCCTCCGCCAATTTGATCTACCAAATGGCCGCCTATCCAGCATACAGAAATGGGAATACAAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20278</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>418637</contig_pos>
        <strand>+</strand>
        <context>CAAAACTTTT[A/C]AAATTTTTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCGCAGTTCGTTAGCAATCCCTTCAGAAAATTGATTTTTCAAAACTTTT</left_flank>
        <right_flank>AAATTTTTTGAGAACATTGATAAACTCTTTGTCAGCGAAAAAACTCGTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAGATAACGCGTTGACCAGGGGCGGCTCGTTGTGTGTGAGTGTTTGCCCTTGTCATTCGCACTTTCACATTACTACTTCTTCTCCGAGTGTTGCTCTCCAGTTCTTTCCATGAAGCTTCTAATTTTTCTATTGTTGCTTTTGGAGACTACGGTAGCCCTACCGGTACCGATAGTCAAGGATCCCAGAGCTAGAATTGTGGCGGATCTCGATATCATCTATGTAGAATGGCAATCTGGACCTCAACCGCAAAGTAAGGGTATACTGTAGATAGAGAAAAACATTTCGAAAAAAATTATGATTAAGAATCTGCATTCATCAATTTTCTCGTTCATTTTCGAATGATTCAGCGTTTTCAATTATTCGGTTTTTGAACTAGTGCCTTTGCTAGACCATGACAGACAACTATTGTAATCCGTTTGTAGTATTAGTATTCAGTTCATTAGCAATCGCAGTTCGTTAGCAATCCCTTCAGAAAATTGATTTTTCAAAACTTTTAAAATTTTTTGAGAACATTGATAAACTCTTTGTCAGCGAAAAAACTCGTTTTGCAAACTGATAAGAGCAGAACAATTCAGCATTTTTAGAGAAAAAGTGAACAAATATAATGACTTCCAGATACCATGTACACGATTCGTCACAAGACGGGATCGGATCAGGTGGCCTGGAAGTACATCAAAACAGGCGAATCCAATGTGCGCATCCCATTAGGCACGTATGCTGATGGAGATGCTGTTCACATTCAGGTACCAGGAAATGAAGAAAAAATACAAATCTAGAGAGAACATTTCAGATAAAAACCGAGAGAGGAGCTCAAGTCGTAGAGAATTGGACGAAGGAAATTGTTGTGAACGTGGCTAAAAAGGTTTGTGAGTGTTTCGGAATGAGATATGAACGGCAGAGCGGACAAAAGAATAAGTAATGTTTTGAAAAAAATCTTGAAACTTTTCCTAACGCCAAAGAACCCATAAAAAGTGGTCCGACATGTTTCTACCTAAT</canonical>
            <polymorphic>TTTGAGATAACGCGTTGACCAGGGGCGGCTCGTTGTGTGTGAGTGTTTGCCCTTGTCATTCGCACTTTCACATTACTACTTCTTCTCCGAGTGTTGCTCTCCAGTTCTTTCCATGAAGCTTCTAATTTTTCTATTGTTGCTTTTGGAGACTACGGTAGCCCTACCGGTACCGATAGTCAAGGATCCCAGAGCTAGAATTGTGGCGGATCTCGATATCATCTATGTAGAATGGCAATCTGGACCTCAACCGCAAAGTAAGGGTATACTGTAGATAGAGAAAAACATTTCGAAAAAAATTATGATTAAGAATCTGCATTCATCAATTTTCTCGTTCATTTTCGAATGATTCAGCGTTTTCAATTATTCGGTTTTTGAACTAGTGCCTTTGCTAGACCATGACAGACAACTATTGTAATCCGTTTGTAGTATTAGTATTCAGTTCATTAGCAATCGCAGTTCGTTAGCAATCCCTTCAGAAAATTGATTTTTCAAAACTTTTMAAATTTTTTGAGAACATTGATAAACTCTTTGTCAGCGAAAAAACTCGTTTTGCAAACTGATAAGAGCAGAACAATTCAGCATTTTTAGAGAAAAAGTGAACAAATATAATGACTTCCAGATACCATGTACACGATTCGTCACAAGACGGGATCGGATCAGGTGGCCTGGAAGTACATCAAAACAGGCGAATCCAATGTGCGCATCCCATTAGGCACGTATGCTGATGGAGATGCTGTTCACATTCAGGTACCAGGAAATGAAGAAAAAATACAAATCTAGAGAGAACATTTCAGATAAAAACCGAGAGAGGAGCTCAAGTCGTAGAGAATTGGACGAAGGAAATTGTTGTGAACGTGGCTAAAAAGGTTTGTGAGTGTTTCGGAATGAGATATGAACGGCAGAGCGGACAAAAGAATAAGTAATGTTTTGAAAAAAATCTTGAAACTTTTCCTAACGCCAAAGAACCCATAAAAAGTGGTCCGACATGTTTCTACCTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 303 195</canonical_bands>
                <polymorphic_bands>697 303</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTAGACCATGACAGACAACTAT</pcr_primer_p1>
		<pcr_primer_p2>GTACATGGTATCTGGAAGTCATT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GCTAGACCATGACAGACAACTATTGTAATCCGTTTGTAGTATTAGTATTCAGTTCATTAGCAATCGCAGTTCGTTAGCAATCCCTTCAGAAAATTGATTTTTCAAAACTTTTAAAATTTTTTGAGAACATTGATAAACTCTTTGTCAGCGAAAAAACTCGTTTTGCAAACTGATAAGAGCAGAACAATTCAGCATTTTTAGAGAAAAAGTGAACAAATATAATGACTTCCAGATACCATGTAC</canonical_amplicon>
		<polymorphic_amplicon>GCTAGACCATGACAGACAACTATTGTAATCCGTTTGTAGTATTAGTATTCAGTTCATTAGCAATCGCAGTTCGTTAGCAATCCCTTCAGAAAATTGATTTTTCAAAACTTTTMAAATTTTTTGAGAACATTGATAAACTCTTTGTCAGCGAAAAAACTCGTTTTGCAAACTGATAAGAGCAGAACAATTCAGCATTTTTAGAGAAAAAGTGAACAAATATAATGACTTCCAGATACCATGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20279</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>442233</contig_pos>
        <strand>+</strand>
        <context>TGAGACGTAA[A/T]WTTTTTTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTACGAGAAAGAGTATTACAGATTGAATGCGGTCATCAATGAGACGTAA</left_flank>
        <right_flank>TTTTTTTTGAAAAATTTTCAAAATAACTTTCTAGATCTTTCAGCCGTCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTGCAATTCGACACTAATGATAATGGTGTGAAATGGAAGGAGCACACTCTACGTCATGAAGAGTTTTTGACTTTTGAAGGTCCTAAAAAACGAGAGGCACTGGAGAAAATCTTCGAGAACTACAACCTTTTGGTAATTTGATCTGCTTCACGCGTTTGGAAAAAAGCGAAAAATTTTGAGAAATTTCAGGTGATCACAAGATTTTACAAAAGTCTCAAAAAATCTGTGGAGCATTTGGAGGACTTGCATGTGCCAGTTTCCAGCCACAACCATTACTATCATGGAATTTTTGATGAAATCGTGGACATTCACATTTCTCAAATTAGATCGGAGTCAAAGTATAATGAAGAACAGAAGAATTACCTGATCGACAGAGTGAAAAAAGTGAAAATCATTTTTCCGTACTTGGAGTACAATAATATCACGGTCTGGAGGCAAGCCAAGACTGCTTACGAGAAAGAGTATTACAGATTGAATGCGGTCATCAATGAGACGTAATTTTTTTTTGAAAAATTTTCAAAATAACTTTCTAGATCTTTCAGCCGTCTCCACCCCGATGTGGTCGACAAAATGATCCGAGTGTTGGCTGTAAACCAGGCAATGGAAATTTTCGAAAAATACATCACCACGTTTACACCGCGATTCGTCTTCCAACATGTGGTTTCAGCGGCCACGCGGCACTCATTCAACTACCAGGATGAAATTCATCTTTCAATTTTTACAGTATTCAACCCAAAAACGAATCCGAATGCTGTGGTAAGTGCATGGAGATTGAAAATGTGATATTATTGATTTTTTCAGTACGATCGAATCTTGTATGTTATGTGCCATGAGTTGTTACATGTGCATTATAATGTCGATCCGCCACCATTCGAGACAGAAATTTGGGATCGGGAGAAGCAGTGTATTCATGATAGGCTGGATTATTATGCAAATGCGTATAAGGTGATAAAGTTCCACTTTCAAAAACCAATTTTTCAAAAAGTTAGTATCGCAAAT</canonical>
            <polymorphic>GGTGCAATTCGACACTAATGATAATGGTGTGAAATGGAAGGAGCACACTCTACGTCATGAAGAGTTTTTGACTTTTGAAGGTCCTAAAAAACGAGAGGCACTGGAGAAAATCTTCGAGAACTACAACCTTTTGGTAATTTGATCTGCTTCACGCGTTTGGAAAAAAGCGAAAAATTTTGAGAAATTTCAGGTGATCACAAGATTTTACAAAAGTCTCAAAAAATCTGTGGAGCATTTGGAGGACTTGCATGTGCCAGTTTCCAGCCACAACCATTACTATCATGGAATTTTTGATGAAATCGTGGACATTCACATTTCTCAAATTAGATCGGAGTCAAAGTATAATGAAGAACAGAAGAATTACCTGATCGACAGAGTGAAAAAAGTGAAAATCATTTTTCCGTACTTGGAGTACAATAATATCACGGTCTGGAGGCAAGCCAAGACTGCTTACGAGAAAGAGTATTACAGATTGAATGCGGTCATCAATGAGACGTAAWTTTTTTTTGAAAAATTTTCAAAATAACTTTCTAGATCTTTCAGCCGTCTCCACCCCGATGTGGTCGACAAAATGATCCGAGTGTTGGCTGTAAACCAGGCAATGGAAATTTTCGAAAAATACATCACCACGTTTACACCGCGATTCGTCTTCCAACATGTGGTTTCAGCGGCCACGCGGCACTCATTCAACTACCAGGATGAAATTCATCTTTCAATTTTTACAGTATTCAACCCAAAAACGAATCCGAATGCTGTGGTAAGTGCATGGAGATTGAAAATGTGATATTATTGATTTTTTCAGTACGATCGAATCTTGTATGTTATGTGCCATGAGTTGTTACATGTGCATTATAATGTCGATCCGCCACCATTCGAGACAGAAATTTGGGATCGGGAGAAGCAGTGTATTCATGATAGGCTGGATTATTATGCAAATGCGTATAAGGTGATAAAGTTCCACTTTCAAAAACCAATTTTTCAAAAAGTTAGTATCGCAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>168 139 130 103 96 94 90 37 37 36 28 15 12 10 5</canonical_bands>
                <polymorphic_bands>168 154 130 103 96 94 90 37 37 36 28 12 10 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCCGTACTTGGAGTACAAT</pcr_primer_p1>
		<pcr_primer_p2>GTGTAAACGTGGTGATGTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTTCCGTACTTGGAGTACAATAATATCACGGTCTGGAGGCAAGCCAAGACTGCTTACGAGAAAGAGTATTACAGATTGAATGCGGTCATCAATGAGACGTAATTTTTTTTTGAAAAATTTTCAAAATAACTTTCTAGATCTTTCAGCCGTCTCCACCCCGATGTGGTCGACAAAATGATCCGAGTGTTGGCTGTAAACCAGGCAATGGAAATTTTCGAAAAATACATCACCACGTTTACAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCCGTACTTGGAGTACAATAATATCACGGTCTGGAGGCAAGCCAAGACTGCTTACGAGAAAGAGTATTACAGATTGAATGCGGTCATCAATGAGACGTAAWTTTTTTTTGAAAAATTTTCAAAATAACTTTCTAGATCTTTCAGCCGTCTCCACCCCGATGTGGTCGACAAAATGATCCGAGTGTTGGCTGTAAACCAGGCAATGGAAATTTTCGAAAAATACATCACCACGTTTACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20280</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>442247</contig_pos>
        <strand></strand>
        <context>TTTTTGAAAA[A/T]TTTTCAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATTACAGATTGAATGCGGTCATCAATGAGACGTAATTTTTTTTTGAAAA</left_flank>
        <right_flank>TTTTCAAAATAACTTTCTAGATCTTTCAGCCGTCTCCACCCCGATGTGGT</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAATGATAATGGTGTGAAATGGAAGGAGCACACTCTACGTCATGAAGAGTTTTTGACTTTTGAAGGTCCTAAAAAACGAGAGGCACTGGAGAAAATCTTCGAGAACTACAACCTTTTGGTAATTTGATCTGCTTCACGCGTTTGGAAAAAAGCGAAAAATTTTGAGAAATTTCAGGTGATCACAAGATTTTACAAAAGTCTCAAAAAATCTGTGGAGCATTTGGAGGACTTGCATGTGCCAGTTTCCAGCCACAACCATTACTATCATGGAATTTTTGATGAAATCGTGGACATTCACATTTCTCAAATTAGATCGGAGTCAAAGTATAATGAAGAACAGAAGAATTACCTGATCGACAGAGTGAAAAAAGTGAAAATCATTTTTCCGTACTTGGAGTACAATAATATCACGGTCTGGAGGCAAGCCAAGACTGCTTACGAGAAAGAGTATTACAGATTGAATGCGGTCATCAATGAGACGTAATTTTTTTTTGAAAAATTTTCAAAATAACTTTCTAGATCTTTCAGCCGTCTCCACCCCGATGTGGTCGACAAAATGATCCGAGTGTTGGCTGTAAACCAGGCAATGGAAATTTTCGAAAAATACATCACCACGTTTACACCGCGATTCGTCTTCCAACATGTGGTTTCAGCGGCCACGCGGCACTCATTCAACTACCAGGATGAAATTCATCTTTCAATTTTTACAGTATTCAACCCAAAAACGAATCCGAATGCTGTGGTAAGTGCATGGAGATTGAAAATGTGATATTATTGATTTTTTCAGTACGATCGAATCTTGTATGTTATGTGCCATGAGTTGTTACATGTGCATTATAATGTCGATCCGCCACCATTCGAGACAGAAATTTGGGATCGGGAGAAGCAGTGTATTCATGATAGGCTGGATTATTATGCAAATGCGTATAAGGTGATAAAGTTCCACTTTCAAAAACCAATTTTTCAAAAAGTTAGTATCGCAAATTGGGAAATGCTAGA</canonical>
            <polymorphic>CTAATGATAATGGTGTGAAATGGAAGGAGCACACTCTACGTCATGAAGAGTTTTTGACTTTTGAAGGTCCTAAAAAACGAGAGGCACTGGAGAAAATCTTCGAGAACTACAACCTTTTGGTAATTTGATCTGCTTCACGCGTTTGGAAAAAAGCGAAAAATTTTGAGAAATTTCAGGTGATCACAAGATTTTACAAAAGTCTCAAAAAATCTGTGGAGCATTTGGAGGACTTGCATGTGCCAGTTTCCAGCCACAACCATTACTATCATGGAATTTTTGATGAAATCGTGGACATTCACATTTCTCAAATTAGATCGGAGTCAAAGTATAATGAAGAACAGAAGAATTACCTGATCGACAGAGTGAAAAAAGTGAAAATCATTTTTCCGTACTTGGAGTACAATAATATCACGGTCTGGAGGCAAGCCAAGACTGCTTACGAGAAAGAGTATTACAGATTGAATGCGGTCATCAATGAGACGTAATTTTTTTTTGAAAAWTTTTCAAAATAACTTTCTAGATCTTTCAGCCGTCTCCACCCCGATGTGGTCGACAAAATGATCCGAGTGTTGGCTGTAAACCAGGCAATGGAAATTTTCGAAAAATACATCACCACGTTTACACCGCGATTCGTCTTCCAACATGTGGTTTCAGCGGCCACGCGGCACTCATTCAACTACCAGGATGAAATTCATCTTTCAATTTTTACAGTATTCAACCCAAAAACGAATCCGAATGCTGTGGTAAGTGCATGGAGATTGAAAATGTGATATTATTGATTTTTTCAGTACGATCGAATCTTGTATGTTATGTGCCATGAGTTGTTACATGTGCATTATAATGTCGATCCGCCACCATTCGAGACAGAAATTTGGGATCGGGAGAAGCAGTGTATTCATGATAGGCTGGATTATTATGCAAATGCGTATAAGGTGATAAAGTTCCACTTTCAAAAACCAATTTTTCAAAAAGTTAGTATCGCAAATTGGGAAATGCTAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>227 180 158 132 103 96 94 10</canonical_bands>
                <polymorphic_bands>321 180 158 132 103 96 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>168 139 121 103 96 94 90 37 37 36 25 17 15 12 10</canonical_bands>
                <polymorphic_bands>168 139 121 109 103 96 90 37 37 36 25 17 12 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCCGTACTTGGAGTACAAT</pcr_primer_p1>
		<pcr_primer_p2>GTGTAAACGTGGTGATGTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTTCCGTACTTGGAGTACAATAATATCACGGTCTGGAGGCAAGCCAAGACTGCTTACGAGAAAGAGTATTACAGATTGAATGCGGTCATCAATGAGACGTAATTTTTTTTTGAAAAATTTTCAAAATAACTTTCTAGATCTTTCAGCCGTCTCCACCCCGATGTGGTCGACAAAATGATCCGAGTGTTGGCTGTAAACCAGGCAATGGAAATTTTCGAAAAATACATCACCACGTTTACAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCCGTACTTGGAGTACAATAATATCACGGTCTGGAGGCAAGCCAAGACTGCTTACGAGAAAGAGTATTACAGATTGAATGCGGTCATCAATGAGACGTAATTTTTTTTTGAAAAWTTTTCAAAATAACTTTCTAGATCTTTCAGCCGTCTCCACCCCGATGTGGTCGACAAAATGATCCGAGTGTTGGCTGTAAACCAGGCAATGGAAATTTTCGAAAAATACATCACCACGTTTACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20281</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>442330</contig_pos>
        <strand>+</strand>
        <context>GCTGTAAACC[A/C]GGCAATGGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTCCACCCCGATGTGGTCGACAAAATGATCCGAGTGTTGGCTGTAAACC</left_flank>
        <right_flank>GGCAATGGAAATTTTCGAAAAATACATCACCACGTTTACACCGCGATTCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCACTGGAGAAAATCTTCGAGAACTACAACCTTTTGGTAATTTGATCTGCTTCACGCGTTTGGAAAAAAGCGAAAAATTTTGAGAAATTTCAGGTGATCACAAGATTTTACAAAAGTCTCAAAAAATCTGTGGAGCATTTGGAGGACTTGCATGTGCCAGTTTCCAGCCACAACCATTACTATCATGGAATTTTTGATGAAATCGTGGACATTCACATTTCTCAAATTAGATCGGAGTCAAAGTATAATGAAGAACAGAAGAATTACCTGATCGACAGAGTGAAAAAAGTGAAAATCATTTTTCCGTACTTGGAGTACAATAATATCACGGTCTGGAGGCAAGCCAAGACTGCTTACGAGAAAGAGTATTACAGATTGAATGCGGTCATCAATGAGACGTAATTTTTTTTTGAAAAATTTTCAAAATAACTTTCTAGATCTTTCAGCCGTCTCCACCCCGATGTGGTCGACAAAATGATCCGAGTGTTGGCTGTAAACCAGGCAATGGAAATTTTCGAAAAATACATCACCACGTTTACACCGCGATTCGTCTTCCAACATGTGGTTTCAGCGGCCACGCGGCACTCATTCAACTACCAGGATGAAATTCATCTTTCAATTTTTACAGTATTCAACCCAAAAACGAATCCGAATGCTGTGGTAAGTGCATGGAGATTGAAAATGTGATATTATTGATTTTTTCAGTACGATCGAATCTTGTATGTTATGTGCCATGAGTTGTTACATGTGCATTATAATGTCGATCCGCCACCATTCGAGACAGAAATTTGGGATCGGGAGAAGCAGTGTATTCATGATAGGCTGGATTATTATGCAAATGCGTATAAGGTGATAAAGTTCCACTTTCAAAAACCAATTTTTCAAAAAGTTAGTATCGCAAATTGGGAAATGCTAGAATATTATTGCAAAATTATTATTATTGGTTTTAAAACCTCCAGTGCAATAAGAAAAAAATGGAAGTTTTTTAACAGAACGAATC</canonical>
            <polymorphic>GCACTGGAGAAAATCTTCGAGAACTACAACCTTTTGGTAATTTGATCTGCTTCACGCGTTTGGAAAAAAGCGAAAAATTTTGAGAAATTTCAGGTGATCACAAGATTTTACAAAAGTCTCAAAAAATCTGTGGAGCATTTGGAGGACTTGCATGTGCCAGTTTCCAGCCACAACCATTACTATCATGGAATTTTTGATGAAATCGTGGACATTCACATTTCTCAAATTAGATCGGAGTCAAAGTATAATGAAGAACAGAAGAATTACCTGATCGACAGAGTGAAAAAAGTGAAAATCATTTTTCCGTACTTGGAGTACAATAATATCACGGTCTGGAGGCAAGCCAAGACTGCTTACGAGAAAGAGTATTACAGATTGAATGCGGTCATCAATGAGACGTAATTTTTTTTTGAAAAATTTTCAAAATAACTTTCTAGATCTTTCAGCCGTCTCCACCCCGATGTGGTCGACAAAATGATCCGAGTGTTGGCTGTAAACCMGGCAATGGAAATTTTCGAAAAATACATCACCACGTTTACACCGCGATTCGTCTTCCAACATGTGGTTTCAGCGGCCACGCGGCACTCATTCAACTACCAGGATGAAATTCATCTTTCAATTTTTACAGTATTCAACCCAAAAACGAATCCGAATGCTGTGGTAAGTGCATGGAGATTGAAAATGTGATATTATTGATTTTTTCAGTACGATCGAATCTTGTATGTTATGTGCCATGAGTTGTTACATGTGCATTATAATGTCGATCCGCCACCATTCGAGACAGAAATTTGGGATCGGGAGAAGCAGTGTATTCATGATAGGCTGGATTATTATGCAAATGCGTATAAGGTGATAAAGTTCCACTTTCAAAAACCAATTTTTCAAAAAGTTAGTATCGCAAATTGGGAAATGCTAGAATATTATTGCAAAATTATTATTATTGGTTTTAAAACCTCCAGTGCAATAAGAAAAAAATGGAAGTTTTTTAACAGAACGAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNTGG</site>
                <isoschizomers>
                    <enzyme>AccB7I</enzyme>
                    <enzyme>PflBI</enzyme>
                    <enzyme>PflMI</enzyme>
                    <enzyme>Van91I</enzyme>
                </isoschizomers>
                <canonical_bands>504 439 57</canonical_bands>
                <polymorphic_bands>561 439</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>499 402 99</canonical_bands>
                <polymorphic_bands>598 402</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAGAAAGAGTATTACAGATTGAA</pcr_primer_p1>
		<pcr_primer_p2>TCATCCTGGTAGTTGAATGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGAGAAAGAGTATTACAGATTGAATGCGGTCATCAATGAGACGTAATTTTTTTTTGAAAAATTTTCAAAATAACTTTCTAGATCTTTCAGCCGTCTCCACCCCGATGTGGTCGACAAAATGATCCGAGTGTTGGCTGTAAACCAGGCAATGGAAATTTTCGAAAAATACATCACCACGTTTACACCGCGATTCGTCTTCCAACATGTGGTTTCAGCGGCCACGCGGCACTCATTCAACTACCAGGATGA</canonical_amplicon>
		<polymorphic_amplicon>CGAGAAAGAGTATTACAGATTGAATGCGGTCATCAATGAGACGTAATTTTTTTTTGAAAAATTTTCAAAATAACTTTCTAGATCTTTCAGCCGTCTCCACCCCGATGTGGTCGACAAAATGATCCGAGTGTTGGCTGTAAACCMGGCAATGGAAATTTTCGAAAAATACATCACCACGTTTACACCGCGATTCGTCTTCCAACATGTGGTTTCAGCGGCCACGCGGCACTCATTCAACTACCAGGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20282</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>442691</contig_pos>
        <strand>+</strand>
        <context>TGATAAAGTT[A/C]CACTTTCAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTCATGATAGGCTGGATTATTATGCAAATGCGTATAAGGTGATAAAGTT</left_flank>
        <right_flank>CACTTTCAAAAACCAATTTTTCAAAAAGTTAGTATCGCAAATTGGGAAAT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAGTATTACAGATTGAATGCGGTCATCAATGAGACGTAATTTTTTTTTGAAAAATTTTCAAAATAACTTTCTAGATCTTTCAGCCGTCTCCACCCCGATGTGGTCGACAAAATGATCCGAGTGTTGGCTGTAAACCAGGCAATGGAAATTTTCGAAAAATACATCACCACGTTTACACCGCGATTCGTCTTCCAACATGTGGTTTCAGCGGCCACGCGGCACTCATTCAACTACCAGGATGAAATTCATCTTTCAATTTTTACAGTATTCAACCCAAAAACGAATCCGAATGCTGTGGTAAGTGCATGGAGATTGAAAATGTGATATTATTGATTTTTTCAGTACGATCGAATCTTGTATGTTATGTGCCATGAGTTGTTACATGTGCATTATAATGTCGATCCGCCACCATTCGAGACAGAAATTTGGGATCGGGAGAAGCAGTGTATTCATGATAGGCTGGATTATTATGCAAATGCGTATAAGGTGATAAAGTTCCACTTTCAAAAACCAATTTTTCAAAAAGTTAGTATCGCAAATTGGGAAATGCTAGAATATTATTGCAAAATTATTATTATTGGTTTTAAAACCTCCAGTGCAATAAGAAAAAAATGGAAGTTTTTTAACAGAACGAATCCGACTGGAGTCTTGCCCAATTTTCCTATGAAGACAGTGCAAATGTTTCTGGCTTGCGTTTGATGCTCCTCTATCTTGCCCAGATGACTTCTGACAGCAATCAGGTTATTCTTCCCAATTTTTAAATGGTACCCAGCATCTTTTTCCAGATTCGTGAGAATATTGAAAACGTTGTCACCCGATTCTGCCACAAGACGCAACGAAAAGCTGCTGCACATAATCCTCTCGACGTCTCCCTGAATGTCGCCGTGTCACAGATGCCCACATTCAACAGTCTCTACAACTGTACCCCCGGAGATCGAATGTACGTCGCTCGTGACAAATACTGCAAAGCGTTGAACATGGACATTGATGTGAACGAC</canonical>
            <polymorphic>AAGAGTATTACAGATTGAATGCGGTCATCAATGAGACGTAATTTTTTTTTGAAAAATTTTCAAAATAACTTTCTAGATCTTTCAGCCGTCTCCACCCCGATGTGGTCGACAAAATGATCCGAGTGTTGGCTGTAAACCAGGCAATGGAAATTTTCGAAAAATACATCACCACGTTTACACCGCGATTCGTCTTCCAACATGTGGTTTCAGCGGCCACGCGGCACTCATTCAACTACCAGGATGAAATTCATCTTTCAATTTTTACAGTATTCAACCCAAAAACGAATCCGAATGCTGTGGTAAGTGCATGGAGATTGAAAATGTGATATTATTGATTTTTTCAGTACGATCGAATCTTGTATGTTATGTGCCATGAGTTGTTACATGTGCATTATAATGTCGATCCGCCACCATTCGAGACAGAAATTTGGGATCGGGAGAAGCAGTGTATTCATGATAGGCTGGATTATTATGCAAATGCGTATAAGGTGATAAAGTTMCACTTTCAAAAACCAATTTTTCAAAAAGTTAGTATCGCAAATTGGGAAATGCTAGAATATTATTGCAAAATTATTATTATTGGTTTTAAAACCTCCAGTGCAATAAGAAAAAAATGGAAGTTTTTTAACAGAACGAATCCGACTGGAGTCTTGCCCAATTTTCCTATGAAGACAGTGCAAATGTTTCTGGCTTGCGTTTGATGCTCCTCTATCTTGCCCAGATGACTTCTGACAGCAATCAGGTTATTCTTCCCAATTTTTAAATGGTACCCAGCATCTTTTTCCAGATTCGTGAGAATATTGAAAACGTTGTCACCCGATTCTGCCACAAGACGCAACGAAAAGCTGCTGCACATAATCCTCTCGACGTCTCCCTGAATGTCGCCGTGTCACAGATGCCCACATTCAACAGTCTCTACAACTGTACCCCCGGAGATCGAATGTACGTCGCTCGTGACAAATACTGCAAAGCGTTGAACATGGACATTGATGTGAACGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGCAGTGTATTCATGATAGG</pcr_primer_p1>
		<pcr_primer_p2>AAACATTTGCACTGTCTTCATAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGAAGCAGTGTATTCATGATAGGCTGGATTATTATGCAAATGCGTATAAGGTGATAAAGTTCCACTTTCAAAAACCAATTTTTCAAAAAGTTAGTATCGCAAATTGGGAAATGCTAGAATATTATTGCAAAATTATTATTATTGGTTTTAAAACCTCCAGTGCAATAAGAAAAAAATGGAAGTTTTTTAACAGAACGAATCCGACTGGAGTCTTGCCCAATTTTCCTATGAAGACAGTGCAAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>AGAAGCAGTGTATTCATGATAGGCTGGATTATTATGCAAATGCGTATAAGGTGATAAAGTTMCACTTTCAAAAACCAATTTTTCAAAAAGTTAGTATCGCAAATTGGGAAATGCTAGAATATTATTGCAAAATTATTATTATTGGTTTTAAAACCTCCAGTGCAATAAGAAAAAAATGGAAGTTTTTTAACAGAACGAATCCGACTGGAGTCTTGCCCAATTTTCCTATGAAGACAGTGCAAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20283</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>444581</contig_pos>
        <strand>+</strand>
        <context>RAGAAAAATA[C/T]CTTCTAATGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGAGACTACGGGATATCAATAGTACAGTACGATTTTTGTAAGAAAAATA</left_flank>
        <right_flank>CTTCTAATGAGGAATATGTTTTCTAGATGGTCAATATTTACTACAACGCT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTTTTAGTAGCTAAAAGTGTTCAGAAGGTGAGATTTGTTTTCTGGGTCCCAGACAAACCAGAATTTTCAGCCAACAGAGCCAGCTCTCAATCCTTGTAATGATTTTTATGACTATGTTTGCGCTAAAGACACCCGATCAATCACTAATCTCTCATTTACCAGTATGGACCAGGAACTAGAAATTAAGGTTTGCCAAACTTTTGTTTTCCTATCGAATTGAACTTTTGAAACTGTTACTTGATTAAGATACCTGACGAGTACAACGCCACTGATATCGTAAGTAACGGAACTACAGTACCCTTGGACAAACTGGTAAAACTGACAAAAGTGATGAAGTGGTGTACGGAAATTGAGGTATTGTTCACCGGAATTTTTACTATGGATTATTTCGGTGATCTTTTTTCAAACAAGAAAATGGTCCATTCTGCAAGATACACAGCTGTCACGACGAGACTACGGGATATCAATAGTACAGTACGATTTTTGTAAGAAAAATACCTTCTAATGAGGAATATGTTTTCTAGATGGTCAATATTTACTACAACGCTCTTCATGCCAATATCGAAATTTTGGAGCAAATGAAAATACCAATTACGCAGAGAAATGAGTTCTTCCATTGGATGTTTGACACTGTCAAAAATAATACGCTATTGGAAATTGAGGTATGGTTTTCTTAATTAGTTGTTCCTTTCAAAAAATTTTAGGCGTTTTTTTTTTCAGAATTCTGGACTGCCCCAAAAAGCCAAAAAATCCCTTCGTAAAGGAATCGTAGCGTCAAAAAGTTTTTTTGCATTCTACGACTCCAACAATATAACAGCGTTCAGAGAAGCAAAGCTGGCATATGAAACCGAATATTATCGATTGCAAAGTTTGTTGTCTTTAGAGTAAGTTCGCACATTCAGCTCCAGATCGTATTCTACTATGATCATTTAGGGATCTTATGAACCCAATCGCCGAAAAAATACTACGTCTTGGTGCTATCGACGCATCAATAGCAG</canonical>
            <polymorphic>GTGTTTTAGTAGCTAAAAGTGTTCAGAAGGTGAGATTTGTTTTCTGGGTCCCAGACAAACCAGAATTTTCAGCCAACAGAGCCAGCTCTCAATCCTTGTAATGATTTTTATGACTATGTTTGCGCTAAAGACACCCGATCAATCACTAATCTCTCATTTACCAGTATGGACCAGGAACTAGAAATTAAGGTTTGCCAAACTTTTGTTTTCCTATCGAATTGAACTTTTGAAACTGTTACTTGATTAAGATACCTGACGAGTACAACGCCACTGATATCGTAAGTAACGGAACTACAGTACCCTTGGACAAACTGGTAAAACTGACAAAAGTGATGAAGTGGTGTACGGAAATTGAGGTATTGTTCACCGGAATTTTTACTATGGATTATTTCGGTGATCTTTTTTCAAACAAGAAAATGGTCCATTCTGCAAGATACACAGCTGTCACGACGAGACTACGGGATATCAATAGTACAGTACGATTTTTGTAAGAAAAATAYCTTCTAATGAGGAATATGTTTTCTAGATGGTCAATATTTACTACAACGCTCTTCATGCCAATATCGAAATTTTGGAGCAAATGAAAATACCAATTACGCAGAGAAATGAGTTCTTCCATTGGATGTTTGACACTGTCAAAAATAATACGCTATTGGAAATTGAGGTATGGTTTTCTTAATTAGTTGTTCCTTTCAAAAAATTTTAGGCGTTTTTTTTTTCAGAATTCTGGACTGCCCCAAAAAGCCAAAAAATCCCTTCGTAAAGGAATCGTAGCGTCAAAAAGTTTTTTTGCATTCTACGACTCCAACAATATAACAGCGTTCAGAGAAGCAAAGCTGGCATATGAAACCGAATATTATCGATTGCAAAGTTTGTTGTCTTTAGAGTAAGTTCGCACATTCAGCTCCAGATCGTATTCTACTATGATCATTTAGGGATCTTATGAACCCAATCGCCGAAAAAATACTACGTCTTGGTGCTATCGACGCATCAATAGCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGGAATTTTTACTATGGATTAT</pcr_primer_p1>
		<pcr_primer_p2>AAGAACTCATTTCTCTGCGTAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCGGAATTTTTACTATGGATTATTTCGGTGATCTTTTTTCAAACAAGAAAATGGTCCATTCTGCAAGATACACAGCTGTCACGACGAGACTACGGGATATCAATAGTACAGTACGATTTTTGTAAGAAAAATACCTTCTAATGAGGAATATGTTTTCTAGATGGTCAATATTTACTACAACGCTCTTCATGCCAATATCGAAATTTTGGAGCAAATGAAAATACCAATTACGCAGAGAAATGAGTTCTT</canonical_amplicon>
		<polymorphic_amplicon>CCGGAATTTTTACTATGGATTATTTCGGTGATCTTTTTTCAAACAAGAAAATGGTCCATTCTGCAAGATACACAGCTGTCACGACGAGACTACGGGATATCAATAGTACAGTACGATTTTTGTAAGAAAAATAYCTTCTAATGAGGAATATGTTTTCTAGATGGTCAATATTTACTACAACGCTCTTCATGCCAATATCGAAATTTTGGAGCAAATGAAAATACCAATTACGCAGAGAAATGAGTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20284</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>444571</contig_pos>
        <strand>+</strand>
        <context>CGATTTTTGT[A/G]AGAAAAATAY</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCTGTCACGACGAGACTACGGGATATCAATAGTACAGTACGATTTTTGT</left_flank>
        <right_flank>AGAAAAATACCTTCTAATGAGGAATATGTTTTCTAGATGGTCAATATTTA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGTTTCTTGTGTTTTAGTAGCTAAAAGTGTTCAGAAGGTGAGATTTGTTTTCTGGGTCCCAGACAAACCAGAATTTTCAGCCAACAGAGCCAGCTCTCAATCCTTGTAATGATTTTTATGACTATGTTTGCGCTAAAGACACCCGATCAATCACTAATCTCTCATTTACCAGTATGGACCAGGAACTAGAAATTAAGGTTTGCCAAACTTTTGTTTTCCTATCGAATTGAACTTTTGAAACTGTTACTTGATTAAGATACCTGACGAGTACAACGCCACTGATATCGTAAGTAACGGAACTACAGTACCCTTGGACAAACTGGTAAAACTGACAAAAGTGATGAAGTGGTGTACGGAAATTGAGGTATTGTTCACCGGAATTTTTACTATGGATTATTTCGGTGATCTTTTTTCAAACAAGAAAATGGTCCATTCTGCAAGATACACAGCTGTCACGACGAGACTACGGGATATCAATAGTACAGTACGATTTTTGTAAGAAAAATACCTTCTAATGAGGAATATGTTTTCTAGATGGTCAATATTTACTACAACGCTCTTCATGCCAATATCGAAATTTTGGAGCAAATGAAAATACCAATTACGCAGAGAAATGAGTTCTTCCATTGGATGTTTGACACTGTCAAAAATAATACGCTATTGGAAATTGAGGTATGGTTTTCTTAATTAGTTGTTCCTTTCAAAAAATTTTAGGCGTTTTTTTTTTCAGAATTCTGGACTGCCCCAAAAAGCCAAAAAATCCCTTCGTAAAGGAATCGTAGCGTCAAAAAGTTTTTTTGCATTCTACGACTCCAACAATATAACAGCGTTCAGAGAAGCAAAGCTGGCATATGAAACCGAATATTATCGATTGCAAAGTTTGTTGTCTTTAGAGTAAGTTCGCACATTCAGCTCCAGATCGTATTCTACTATGATCATTTAGGGATCTTATGAACCCAATCGCCGAAAAAATACTACGTCTTGGTGCTATCGACGCA</canonical>
            <polymorphic>ATTGTTTCTTGTGTTTTAGTAGCTAAAAGTGTTCAGAAGGTGAGATTTGTTTTCTGGGTCCCAGACAAACCAGAATTTTCAGCCAACAGAGCCAGCTCTCAATCCTTGTAATGATTTTTATGACTATGTTTGCGCTAAAGACACCCGATCAATCACTAATCTCTCATTTACCAGTATGGACCAGGAACTAGAAATTAAGGTTTGCCAAACTTTTGTTTTCCTATCGAATTGAACTTTTGAAACTGTTACTTGATTAAGATACCTGACGAGTACAACGCCACTGATATCGTAAGTAACGGAACTACAGTACCCTTGGACAAACTGGTAAAACTGACAAAAGTGATGAAGTGGTGTACGGAAATTGAGGTATTGTTCACCGGAATTTTTACTATGGATTATTTCGGTGATCTTTTTTCAAACAAGAAAATGGTCCATTCTGCAAGATACACAGCTGTCACGACGAGACTACGGGATATCAATAGTACAGTACGATTTTTGTRAGAAAAATACCTTCTAATGAGGAATATGTTTTCTAGATGGTCAATATTTACTACAACGCTCTTCATGCCAATATCGAAATTTTGGAGCAAATGAAAATACCAATTACGCAGAGAAATGAGTTCTTCCATTGGATGTTTGACACTGTCAAAAATAATACGCTATTGGAAATTGAGGTATGGTTTTCTTAATTAGTTGTTCCTTTCAAAAAATTTTAGGCGTTTTTTTTTTCAGAATTCTGGACTGCCCCAAAAAGCCAAAAAATCCCTTCGTAAAGGAATCGTAGCGTCAAAAAGTTTTTTTGCATTCTACGACTCCAACAATATAACAGCGTTCAGAGAAGCAAAGCTGGCATATGAAACCGAATATTATCGATTGCAAAGTTTGTTGTCTTTAGAGTAAGTTCGCACATTCAGCTCCAGATCGTATTCTACTATGATCATTTAGGGATCTTATGAACCCAATCGCCGAAAAAATACTACGTCTTGGTGCTATCGACGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGGAATTTTTACTATGGATTAT</pcr_primer_p1>
		<pcr_primer_p2>AAGAACTCATTTCTCTGCGTAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCGGAATTTTTACTATGGATTATTTCGGTGATCTTTTTTCAAACAAGAAAATGGTCCATTCTGCAAGATACACAGCTGTCACGACGAGACTACGGGATATCAATAGTACAGTACGATTTTTGTAAGAAAAATACCTTCTAATGAGGAATATGTTTTCTAGATGGTCAATATTTACTACAACGCTCTTCATGCCAATATCGAAATTTTGGAGCAAATGAAAATACCAATTACGCAGAGAAATGAGTTCTT</canonical_amplicon>
		<polymorphic_amplicon>CCGGAATTTTTACTATGGATTATTTCGGTGATCTTTTTTCAAACAAGAAAATGGTCCATTCTGCAAGATACACAGCTGTCACGACGAGACTACGGGATATCAATAGTACAGTACGATTTTTGTRAGAAAAATACCTTCTAATGAGGAATATGTTTTCTAGATGGTCAATATTTACTACAACGCTCTTCATGCCAATATCGAAATTTTGGAGCAAATGAAAATACCAATTACGCAGAGAAATGAGTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20285</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>444380</contig_pos>
        <strand>+</strand>
        <context>GAACTACAGT[A/T]CCCTTGGACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATACCTGACGAGTACAACGCCACTGATATCGTAAGTAACGGAACTACAGT</left_flank>
        <right_flank>CCCTTGGACAAACTGGTAAAACTGACAAAAGTGATGAAGTGGTGTACGGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTCAGGAGGAAAAAGTGAAATCGAAGCCCCGCTGTCATGAGTCTGCTCAATGAAATTTGAGACCGACAGATGAGACGTGGCCACAAAAATCAAGCAGGTGTCTCCTCACACGTTCATCGTGCCAAGAACATTGACTGACGCGGTCTGGACCTTTTGCAAAAACATCATGGATTTCTGTAGAGTTTTAATTATTGTTTCTTGTGTTTTAGTAGCTAAAAGTGTTCAGAAGGTGAGATTTGTTTTCTGGGTCCCAGACAAACCAGAATTTTCAGCCAACAGAGCCAGCTCTCAATCCTTGTAATGATTTTTATGACTATGTTTGCGCTAAAGACACCCGATCAATCACTAATCTCTCATTTACCAGTATGGACCAGGAACTAGAAATTAAGGTTTGCCAAACTTTTGTTTTCCTATCGAATTGAACTTTTGAAACTGTTACTTGATTAAGATACCTGACGAGTACAACGCCACTGATATCGTAAGTAACGGAACTACAGTACCCTTGGACAAACTGGTAAAACTGACAAAAGTGATGAAGTGGTGTACGGAAATTGAGGTATTGTTCACCGGAATTTTTACTATGGATTATTTCGGTGATCTTTTTTCAAACAAGAAAATGGTCCATTCTGCAAGATACACAGCTGTCACGACGAGACTACGGGATATCAATAGTACAGTACGATTTTTGTAAGAAAAATACCTTCTAATGAGGAATATGTTTTCTAGATGGTCAATATTTACTACAACGCTCTTCATGCCAATATCGAAATTTTGGAGCAAATGAAAATACCAATTACGCAGAGAAATGAGTTCTTCCATTGGATGTTTGACACTGTCAAAAATAATACGCTATTGGAAATTGAGGTATGGTTTTCTTAATTAGTTGTTCCTTTCAAAAAATTTTAGGCGTTTTTTTTTTCAGAATTCTGGACTGCCCCAAAAAGCCAAAAAATCCCTTCGTAAAGGAATCGTAGCGTCAAAAAGTTTTTTTGCATTCTA</canonical>
            <polymorphic>CGTCAGGAGGAAAAAGTGAAATCGAAGCCCCGCTGTCATGAGTCTGCTCAATGAAATTTGAGACCGACAGATGAGACGTGGCCACAAAAATCAAGCAGGTGTCTCCTCACACGTTCATCGTGCCAAGAACATTGACTGACGCGGTCTGGACCTTTTGCAAAAACATCATGGATTTCTGTAGAGTTTTAATTATTGTTTCTTGTGTTTTAGTAGCTAAAAGTGTTCAGAAGGTGAGATTTGTTTTCTGGGTCCCAGACAAACCAGAATTTTCAGCCAACAGAGCCAGCTCTCAATCCTTGTAATGATTTTTATGACTATGTTTGCGCTAAAGACACCCGATCAATCACTAATCTCTCATTTACCAGTATGGACCAGGAACTAGAAATTAAGGTTTGCCAAACTTTTGTTTTCCTATCGAATTGAACTTTTGAAACTGTTACTTGATTAAGATACCTGACGAGTACAACGCCACTGATATCGTAAGTAACGGAACTACAGTWCCCTTGGACAAACTGGTAAAACTGACAAAAGTGATGAAGTGGTGTACGGAAATTGAGGTATTGTTCACCGGAATTTTTACTATGGATTATTTCGGTGATCTTTTTTCAAACAAGAAAATGGTCCATTCTGCAAGATACACAGCTGTCACGACGAGACTACGGGATATCAATAGTACAGTACGATTTTTGTAAGAAAAATACCTTCTAATGAGGAATATGTTTTCTAGATGGTCAATATTTACTACAACGCTCTTCATGCCAATATCGAAATTTTGGAGCAAATGAAAATACCAATTACGCAGAGAAATGAGTTCTTCCATTGGATGTTTGACACTGTCAAAAATAATACGCTATTGGAAATTGAGGTATGGTTTTCTTAATTAGTTGTTCCTTTCAAAAAATTTTAGGCGTTTTTTTTTTCAGAATTCTGGACTGCCCCAAAAAGCCAAAAAATCCCTTCGTAAAGGAATCGTAGCGTCAAAAAGTTTTTTTGCATTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>462 321 129 46 37 5</canonical_bands>
                <polymorphic_bands>462 321 129 83 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCTCTCATTTACCAGTATGGAC</pcr_primer_p1>
		<pcr_primer_p2>CACCGAAATAATCCATAGTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATCTCTCATTTACCAGTATGGACCAGGAACTAGAAATTAAGGTTTGCCAAACTTTTGTTTTCCTATCGAATTGAACTTTTGAAACTGTTACTTGATTAAGATACCTGACGAGTACAACGCCACTGATATCGTAAGTAACGGAACTACAGTACCCTTGGACAAACTGGTAAAACTGACAAAAGTGATGAAGTGGTGTACGGAAATTGAGGTATTGTTCACCGGAATTTTTACTATGGATTATTTCGGTG</canonical_amplicon>
		<polymorphic_amplicon>AATCTCTCATTTACCAGTATGGACCAGGAACTAGAAATTAAGGTTTGCCAAACTTTTGTTTTCCTATCGAATTGAACTTTTGAAACTGTTACTTGATTAAGATACCTGACGAGTACAACGCCACTGATATCGTAAGTAACGGAACTACAGTWCCCTTGGACAAACTGGTAAAACTGACAAAAGTGATGAAGTGGTGTACGGAAATTGAGGTATTGTTCACCGGAATTTTTACTATGGATTATTTCGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20286</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>444364</contig_pos>
        <strand>+</strand>
        <context>GATATYGTAA[A/G]TAACGGAACT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGTTACTTGATTAAGATACCTGACGAGTACAACGCCACTGATATCGTAA</left_flank>
        <right_flank>TAACGGAACTACAGTACCCTTGGACAAACTGGTAAAACTGACAAAAGTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCGAGTACAACGACGTCAGGAGGAAAAAGTGAAATCGAAGCCCCGCTGTCATGAGTCTGCTCAATGAAATTTGAGACCGACAGATGAGACGTGGCCACAAAAATCAAGCAGGTGTCTCCTCACACGTTCATCGTGCCAAGAACATTGACTGACGCGGTCTGGACCTTTTGCAAAAACATCATGGATTTCTGTAGAGTTTTAATTATTGTTTCTTGTGTTTTAGTAGCTAAAAGTGTTCAGAAGGTGAGATTTGTTTTCTGGGTCCCAGACAAACCAGAATTTTCAGCCAACAGAGCCAGCTCTCAATCCTTGTAATGATTTTTATGACTATGTTTGCGCTAAAGACACCCGATCAATCACTAATCTCTCATTTACCAGTATGGACCAGGAACTAGAAATTAAGGTTTGCCAAACTTTTGTTTTCCTATCGAATTGAACTTTTGAAACTGTTACTTGATTAAGATACCTGACGAGTACAACGCCACTGATATCGTAAGTAACGGAACTACAGTACCCTTGGACAAACTGGTAAAACTGACAAAAGTGATGAAGTGGTGTACGGAAATTGAGGTATTGTTCACCGGAATTTTTACTATGGATTATTTCGGTGATCTTTTTTCAAACAAGAAAATGGTCCATTCTGCAAGATACACAGCTGTCACGACGAGACTACGGGATATCAATAGTACAGTACGATTTTTGTAAGAAAAATACCTTCTAATGAGGAATATGTTTTCTAGATGGTCAATATTTACTACAACGCTCTTCATGCCAATATCGAAATTTTGGAGCAAATGAAAATACCAATTACGCAGAGAAATGAGTTCTTCCATTGGATGTTTGACACTGTCAAAAATAATACGCTATTGGAAATTGAGGTATGGTTTTCTTAATTAGTTGTTCCTTTCAAAAAATTTTAGGCGTTTTTTTTTTCAGAATTCTGGACTGCCCCAAAAAGCCAAAAAATCCCTTCGTAAAGGAATCGTAGCGTCAAAAA</canonical>
            <polymorphic>TTTTCGAGTACAACGACGTCAGGAGGAAAAAGTGAAATCGAAGCCCCGCTGTCATGAGTCTGCTCAATGAAATTTGAGACCGACAGATGAGACGTGGCCACAAAAATCAAGCAGGTGTCTCCTCACACGTTCATCGTGCCAAGAACATTGACTGACGCGGTCTGGACCTTTTGCAAAAACATCATGGATTTCTGTAGAGTTTTAATTATTGTTTCTTGTGTTTTAGTAGCTAAAAGTGTTCAGAAGGTGAGATTTGTTTTCTGGGTCCCAGACAAACCAGAATTTTCAGCCAACAGAGCCAGCTCTCAATCCTTGTAATGATTTTTATGACTATGTTTGCGCTAAAGACACCCGATCAATCACTAATCTCTCATTTACCAGTATGGACCAGGAACTAGAAATTAAGGTTTGCCAAACTTTTGTTTTCCTATCGAATTGAACTTTTGAAACTGTTACTTGATTAAGATACCTGACGAGTACAACGCCACTGATATCGTAARTAACGGAACTACAGTACCCTTGGACAAACTGGTAAAACTGACAAAAGTGATGAAGTGGTGTACGGAAATTGAGGTATTGTTCACCGGAATTTTTACTATGGATTATTTCGGTGATCTTTTTTCAAACAAGAAAATGGTCCATTCTGCAAGATACACAGCTGTCACGACGAGACTACGGGATATCAATAGTACAGTACGATTTTTGTAAGAAAAATACCTTCTAATGAGGAATATGTTTTCTAGATGGTCAATATTTACTACAACGCTCTTCATGCCAATATCGAAATTTTGGAGCAAATGAAAATACCAATTACGCAGAGAAATGAGTTCTTCCATTGGATGTTTGACACTGTCAAAAATAATACGCTATTGGAAATTGAGGTATGGTTTTCTTAATTAGTTGTTCCTTTCAAAAAATTTTAGGCGTTTTTTTTTTCAGAATTCTGGACTGCCCCAAAAAGCCAAAAAATCCCTTCGTAAAGGAATCGTAGCGTCAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>451 340 161 48</canonical_bands>
                <polymorphic_bands>451 340 209</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCTCTCATTTACCAGTATGGAC</pcr_primer_p1>
		<pcr_primer_p2>CACCGAAATAATCCATAGTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATCTCTCATTTACCAGTATGGACCAGGAACTAGAAATTAAGGTTTGCCAAACTTTTGTTTTCCTATCGAATTGAACTTTTGAAACTGTTACTTGATTAAGATACCTGACGAGTACAACGCCACTGATATCGTAAGTAACGGAACTACAGTACCCTTGGACAAACTGGTAAAACTGACAAAAGTGATGAAGTGGTGTACGGAAATTGAGGTATTGTTCACCGGAATTTTTACTATGGATTATTTCGGTG</canonical_amplicon>
		<polymorphic_amplicon>AATCTCTCATTTACCAGTATGGACCAGGAACTAGAAATTAAGGTTTGCCAAACTTTTGTTTTCCTATCGAATTGAACTTTTGAAACTGTTACTTGATTAAGATACCTGACGAGTACAACGCCACTGATATCGTAARTAACGGAACTACAGTACCCTTGGACAAACTGGTAAAACTGACAAAAGTGATGAAGTGGTGTACGGAAATTGAGGTATTGTTCACCGGAATTTTTACTATGGATTATTTCGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20287</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>444359</contig_pos>
        <strand>+</strand>
        <context>CCACTGATAT[C/T]GTAARTAACG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAACTGTTACTTGATTAAGATACCTGACGAGTACAACGCCACTGATAT</left_flank>
        <right_flank>GTAAGTAACGGAACTACAGTACCCTTGGACAAACTGGTAAAACTGACAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTTTTCGAGTACAACGACGTCAGGAGGAAAAAGTGAAATCGAAGCCCCGCTGTCATGAGTCTGCTCAATGAAATTTGAGACCGACAGATGAGACGTGGCCACAAAAATCAAGCAGGTGTCTCCTCACACGTTCATCGTGCCAAGAACATTGACTGACGCGGTCTGGACCTTTTGCAAAAACATCATGGATTTCTGTAGAGTTTTAATTATTGTTTCTTGTGTTTTAGTAGCTAAAAGTGTTCAGAAGGTGAGATTTGTTTTCTGGGTCCCAGACAAACCAGAATTTTCAGCCAACAGAGCCAGCTCTCAATCCTTGTAATGATTTTTATGACTATGTTTGCGCTAAAGACACCCGATCAATCACTAATCTCTCATTTACCAGTATGGACCAGGAACTAGAAATTAAGGTTTGCCAAACTTTTGTTTTCCTATCGAATTGAACTTTTGAAACTGTTACTTGATTAAGATACCTGACGAGTACAACGCCACTGATATCGTAAGTAACGGAACTACAGTACCCTTGGACAAACTGGTAAAACTGACAAAAGTGATGAAGTGGTGTACGGAAATTGAGGTATTGTTCACCGGAATTTTTACTATGGATTATTTCGGTGATCTTTTTTCAAACAAGAAAATGGTCCATTCTGCAAGATACACAGCTGTCACGACGAGACTACGGGATATCAATAGTACAGTACGATTTTTGTAAGAAAAATACCTTCTAATGAGGAATATGTTTTCTAGATGGTCAATATTTACTACAACGCTCTTCATGCCAATATCGAAATTTTGGAGCAAATGAAAATACCAATTACGCAGAGAAATGAGTTCTTCCATTGGATGTTTGACACTGTCAAAAATAATACGCTATTGGAAATTGAGGTATGGTTTTCTTAATTAGTTGTTCCTTTCAAAAAATTTTAGGCGTTTTTTTTTTCAGAATTCTGGACTGCCCCAAAAAGCCAAAAAATCCCTTCGTAAAGGAATCGTAGCGTC</canonical>
            <polymorphic>TTTTTTTTTCGAGTACAACGACGTCAGGAGGAAAAAGTGAAATCGAAGCCCCGCTGTCATGAGTCTGCTCAATGAAATTTGAGACCGACAGATGAGACGTGGCCACAAAAATCAAGCAGGTGTCTCCTCACACGTTCATCGTGCCAAGAACATTGACTGACGCGGTCTGGACCTTTTGCAAAAACATCATGGATTTCTGTAGAGTTTTAATTATTGTTTCTTGTGTTTTAGTAGCTAAAAGTGTTCAGAAGGTGAGATTTGTTTTCTGGGTCCCAGACAAACCAGAATTTTCAGCCAACAGAGCCAGCTCTCAATCCTTGTAATGATTTTTATGACTATGTTTGCGCTAAAGACACCCGATCAATCACTAATCTCTCATTTACCAGTATGGACCAGGAACTAGAAATTAAGGTTTGCCAAACTTTTGTTTTCCTATCGAATTGAACTTTTGAAACTGTTACTTGATTAAGATACCTGACGAGTACAACGCCACTGATATYGTAAGTAACGGAACTACAGTACCCTTGGACAAACTGGTAAAACTGACAAAAGTGATGAAGTGGTGTACGGAAATTGAGGTATTGTTCACCGGAATTTTTACTATGGATTATTTCGGTGATCTTTTTTCAAACAAGAAAATGGTCCATTCTGCAAGATACACAGCTGTCACGACGAGACTACGGGATATCAATAGTACAGTACGATTTTTGTAAGAAAAATACCTTCTAATGAGGAATATGTTTTCTAGATGGTCAATATTTACTACAACGCTCTTCATGCCAATATCGAAATTTTGGAGCAAATGAAAATACCAATTACGCAGAGAAATGAGTTCTTCCATTGGATGTTTGACACTGTCAAAAATAATACGCTATTGGAAATTGAGGTATGGTTTTCTTAATTAGTTGTTCCTTTCAAAAAATTTTAGGCGTTTTTTTTTTCAGAATTCTGGACTGCCCCAAAAAGCCAAAAAATCCCTTCGTAAAGGAATCGTAGCGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>497 314 189</canonical_bands>
                <polymorphic_bands>686 314</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCAATCCTTGTAATGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATCACTTTTGTCAGTTTTACCAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTCAATCCTTGTAATGATTTTTATGACTATGTTTGCGCTAAAGACACCCGATCAATCACTAATCTCTCATTTACCAGTATGGACCAGGAACTAGAAATTAAGGTTTGCCAAACTTTTGTTTTCCTATCGAATTGAACTTTTGAAACTGTTACTTGATTAAGATACCTGACGAGTACAACGCCACTGATATCGTAAGTAACGGAACTACAGTACCCTTGGACAAACTGGTAAAACTGACAAAAGTGAT</canonical_amplicon>
		<polymorphic_amplicon>TCTCAATCCTTGTAATGATTTTTATGACTATGTTTGCGCTAAAGACACCCGATCAATCACTAATCTCTCATTTACCAGTATGGACCAGGAACTAGAAATTAAGGTTTGCCAAACTTTTGTTTTCCTATCGAATTGAACTTTTGAAACTGTTACTTGATTAAGATACCTGACGAGTACAACGCCACTGATATYGTAAGTAACGGAACTACAGTACCCTTGGACAAACTGGTAAAACTGACAAAAGTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20288</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>444332</contig_pos>
        <strand>+</strand>
        <context>TGATTAAGAT[A/G]CCTGACGAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGTTTTCCTATCGAATTGAACTTTTGAAACTGTTACTTGATTAAGAT</left_flank>
        <right_flank>CCTGACGAGTACAACGCCACTGATATCGTAAGTAACGGAACTACAGTACC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTACTTTTTGGAGAGAACAAAAAAGTTTTTTTTTCGAGTACAACGACGTCAGGAGGAAAAAGTGAAATCGAAGCCCCGCTGTCATGAGTCTGCTCAATGAAATTTGAGACCGACAGATGAGACGTGGCCACAAAAATCAAGCAGGTGTCTCCTCACACGTTCATCGTGCCAAGAACATTGACTGACGCGGTCTGGACCTTTTGCAAAAACATCATGGATTTCTGTAGAGTTTTAATTATTGTTTCTTGTGTTTTAGTAGCTAAAAGTGTTCAGAAGGTGAGATTTGTTTTCTGGGTCCCAGACAAACCAGAATTTTCAGCCAACAGAGCCAGCTCTCAATCCTTGTAATGATTTTTATGACTATGTTTGCGCTAAAGACACCCGATCAATCACTAATCTCTCATTTACCAGTATGGACCAGGAACTAGAAATTAAGGTTTGCCAAACTTTTGTTTTCCTATCGAATTGAACTTTTGAAACTGTTACTTGATTAAGATACCTGACGAGTACAACGCCACTGATATCGTAAGTAACGGAACTACAGTACCCTTGGACAAACTGGTAAAACTGACAAAAGTGATGAAGTGGTGTACGGAAATTGAGGTATTGTTCACCGGAATTTTTACTATGGATTATTTCGGTGATCTTTTTTCAAACAAGAAAATGGTCCATTCTGCAAGATACACAGCTGTCACGACGAGACTACGGGATATCAATAGTACAGTACGATTTTTGTAAGAAAAATACCTTCTAATGAGGAATATGTTTTCTAGATGGTCAATATTTACTACAACGCTCTTCATGCCAATATCGAAATTTTGGAGCAAATGAAAATACCAATTACGCAGAGAAATGAGTTCTTCCATTGGATGTTTGACACTGTCAAAAATAATACGCTATTGGAAATTGAGGTATGGTTTTCTTAATTAGTTGTTCCTTTCAAAAAATTTTAGGCGTTTTTTTTTTCAGAATTCTGGACTGCCCCAAAAAGCCAAAAA</canonical>
            <polymorphic>CTCTACTTTTTGGAGAGAACAAAAAAGTTTTTTTTTCGAGTACAACGACGTCAGGAGGAAAAAGTGAAATCGAAGCCCCGCTGTCATGAGTCTGCTCAATGAAATTTGAGACCGACAGATGAGACGTGGCCACAAAAATCAAGCAGGTGTCTCCTCACACGTTCATCGTGCCAAGAACATTGACTGACGCGGTCTGGACCTTTTGCAAAAACATCATGGATTTCTGTAGAGTTTTAATTATTGTTTCTTGTGTTTTAGTAGCTAAAAGTGTTCAGAAGGTGAGATTTGTTTTCTGGGTCCCAGACAAACCAGAATTTTCAGCCAACAGAGCCAGCTCTCAATCCTTGTAATGATTTTTATGACTATGTTTGCGCTAAAGACACCCGATCAATCACTAATCTCTCATTTACCAGTATGGACCAGGAACTAGAAATTAAGGTTTGCCAAACTTTTGTTTTCCTATCGAATTGAACTTTTGAAACTGTTACTTGATTAAGATRCCTGACGAGTACAACGCCACTGATATCGTAAGTAACGGAACTACAGTACCCTTGGACAAACTGGTAAAACTGACAAAAGTGATGAAGTGGTGTACGGAAATTGAGGTATTGTTCACCGGAATTTTTACTATGGATTATTTCGGTGATCTTTTTTCAAACAAGAAAATGGTCCATTCTGCAAGATACACAGCTGTCACGACGAGACTACGGGATATCAATAGTACAGTACGATTTTTGTAAGAAAAATACCTTCTAATGAGGAATATGTTTTCTAGATGGTCAATATTTACTACAACGCTCTTCATGCCAATATCGAAATTTTGGAGCAAATGAAAATACCAATTACGCAGAGAAATGAGTTCTTCCATTGGATGTTTGACACTGTCAAAAATAATACGCTATTGGAAATTGAGGTATGGTTTTCTTAATTAGTTGTTCCTTTCAAAAAATTTTAGGCGTTTTTTTTTTCAGAATTCTGGACTGCCCCAAAAAGCCAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCAATCCTTGTAATGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATCACTTTTGTCAGTTTTACCAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTCAATCCTTGTAATGATTTTTATGACTATGTTTGCGCTAAAGACACCCGATCAATCACTAATCTCTCATTTACCAGTATGGACCAGGAACTAGAAATTAAGGTTTGCCAAACTTTTGTTTTCCTATCGAATTGAACTTTTGAAACTGTTACTTGATTAAGATACCTGACGAGTACAACGCCACTGATATCGTAAGTAACGGAACTACAGTACCCTTGGACAAACTGGTAAAACTGACAAAAGTGAT</canonical_amplicon>
		<polymorphic_amplicon>TCTCAATCCTTGTAATGATTTTTATGACTATGTTTGCGCTAAAGACACCCGATCAATCACTAATCTCTCATTTACCAGTATGGACCAGGAACTAGAAATTAAGGTTTGCCAAACTTTTGTTTTCCTATCGAATTGAACTTTTGAAACTGTTACTTGATTAAGATRCCTGACGAGTACAACGCCACTGATATCGTAAGTAACGGAACTACAGTACCCTTGGACAAACTGGTAAAACTGACAAAAGTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20289</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>512076</contig_pos>
        <strand>+</strand>
        <context>GTTTGGAGGC[A/G]AACCTTGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTGATATCCGCGAGGAAGCTTCAAATATGGGAGTGGAAAGTTTGGAGGC</left_flank>
        <right_flank>AACCTTGAGAAGCTCTGCCTCCACTCCTTCGATGTGATGGAATAATCTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGTTTTCAGTTCTCAAAGAGTACTGTGGCTGATTTTAAAAGATTACTGTAGTTATTTCTTAGAGATTACTGTAGTTAGTGAAACTACTTTAGCTAGATTATCGTAGTCAGTGTAACTAGTGAGGTTACTGTTGCTAGTTAGATTACTGTAGTTAGTGAAATTACTGTAGCTAGTAAAAAATTAATGCAGTCGGGGAGATTATTGTAGTTACTCTCCAGAGATTACTTAGTTAAGGAGATTACTGTGATCATTTTTCGTATTACAAATATAGAATTCAAATCTTTAATGACAGATTATTTTATTTCCTTTTGAAATTAATTATAGTGCCAGAATTTTCGAGAAGGACGTCTCGATTACTGTACTTTGATCTTGAGTTTAGAACTTTTTTTTTCAAAATTATTAAACTTTATTTTCATGAATGGTTTTTTCAGGACATCCGCTCTCTATGCTGATATCCGCGAGGAAGCTTCAAATATGGGAGTGGAAAGTTTGGAGGCAAACCTTGAGAAGCTCTGCCTCCACTCCTTCGATGTGATGGAATAATCTGAATTCTCGATTTCTTATGGGGTTATTCATGTAGCGAAAATATGTATTGAAATGCATTTCCGCGCCCTCGAAATTCAATGCATGAGCGTCGCGAAATGTATTTNNNNNNNNNNTCTGCTTTGAAATACATTTCGCCACGCTCATGCATTGAAATTCGAGGGCGCGGAAATGCATTTCAATACATATTTTCGCTACATGAATACCCTCATTAATTTTTTAAAACTCATCACTATGGTTGTTGTATTTTCTTGAAACATTTAGAAACCCAATATCTGGTAACCCTTAATCAAAAATGCTGTCCTTTTTGCTTTTCTCCCCGCTGATTTGGGGAGATTTGCACCGCTTCTGTATTTTTTCCTGTCGTCCCTCCAAACCTTCTTGTAAAGAAGTTCTTTTACATGTTCAGGACCCCCTATTTGCCAATTAAAACATCTGTATCTTGTATTATGATC</canonical>
            <polymorphic>ACTGTTTTCAGTTCTCAAAGAGTACTGTGGCTGATTTTAAAAGATTACTGTAGTTATTTCTTAGAGATTACTGTAGTTAGTGAAACTACTTTAGCTAGATTATCGTAGTCAGTGTAACTAGTGAGGTTACTGTTGCTAGTTAGATTACTGTAGTTAGTGAAATTACTGTAGCTAGTAAAAAATTAATGCAGTCGGGGAGATTATTGTAGTTACTCTCCAGAGATTACTTAGTTAAGGAGATTACTGTGATCATTTTTCGTATTACAAATATAGAATTCAAATCTTTAATGACAGATTATTTTATTTCCTTTTGAAATTAATTATAGTGCCAGAATTTTCGAGAAGGACGTCTCGATTACTGTACTTTGATCTTGAGTTTAGAACTTTTTTTTTCAAAATTATTAAACTTTATTTTCATGAATGGTTTTTTCAGGACATCCGCTCTCTATGCTGATATCCGCGAGGAAGCTTCAAATATGGGAGTGGAAAGTTTGGAGGCRAACCTTGAGAAGCTCTGCCTCCACTCCTTCGATGTGATGGAATAATCTGAATTCTCGATTTCTTATGGGGTTATTCATGTAGCGAAAATATGTATTGAAATGCATTTCCGCGCCCTCGAAATTCAATGCATGAGCGTCGCGAAATGTATTTNNNNNNNNNNTCTGCTTTGAAATACATTTCGCCACGCTCATGCATTGAAATTCGAGGGCGCGGAAATGCATTTCAATACATATTTTCGCTACATGAATACCCTCATTAATTTTTTAAAACTCATCACTATGGTTGTTGTATTTTCTTGAAACATTTAGAAACCCAATATCTGGTAACCCTTAATCAAAAATGCTGTCCTTTTTGCTTTTCTCCCCGCTGATTTGGGGAGATTTGCACCGCTTCTGTATTTTTTCCTGTCGTCCCTCCAAACCTTCTTGTAAAGAAGTTCTTTTACATGTTCAGGACCCCCTATTTGCCAATTAAAACATCTGTATCTTGTATTATGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAAATTAATTATAGTGCCAGAA</pcr_primer_p1>
		<pcr_primer_p2>AGAATTCAGATTATTCCATCACA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTGAAATTAATTATAGTGCCAGAATTTTCGAGAAGGACGTCTCGATTACTGTACTTTGATCTTGAGTTTAGAACTTTTTTTTTCAAAATTATTAAACTTTATTTTCATGAATGGTTTTTTCAGGACATCCGCTCTCTATGCTGATATCCGCGAGGAAGCTTCAAATATGGGAGTGGAAAGTTTGGAGGCAAACCTTGAGAAGCTCTGCCTCCACTCCTTCGATGTGATGGAATAATCTGAATTCT</canonical_amplicon>
		<polymorphic_amplicon>TTGAAATTAATTATAGTGCCAGAATTTTCGAGAAGGACGTCTCGATTACTGTACTTTGATCTTGAGTTTAGAACTTTTTTTTTCAAAATTATTAAACTTTATTTTCATGAATGGTTTTTTCAGGACATCCGCTCTCTATGCTGATATCCGCGAGGAAGCTTCAAATATGGGAGTGGAAAGTTTGGAGGCRAACCTTGAGAAGCTCTGCCTCCACTCCTTCGATGTGATGGAATAATCTGAATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20290</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>542061</contig_pos>
        <strand>+</strand>
        <context>TTCAATGGCT[A/C]ATGGACCAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATATAGTTTCAAATGTCTCAAAAAGTTTTTCAGAGCCTTTTCAATGGCT</left_flank>
        <right_flank>ATGGACCAAAATTAGACTTCAAGGTTTGTCCTTCATCCCCAACCTAAGAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGTCCTCCTCCTCCCATGCCGATGCAACATGCTTAAATCGAAACTGGTCTAAAACGTCGTGTCATCCATTTCATCCCCACACTTTCAATACATTTTCTCAAAAATTACAATGTTGCCTTTGTTTGAAAGATATCCCTATTGAATTTTTTCTTAATAATCCGTTTGTCTACTATAAAATCAAAACACCCATTGCCATTCATTCAAAATGAGAACCCAATCAAAAATCTCCCACACTTATCATGTACCATCTCGTTTCATCCTTCTTACTGCTATTTTCAAATCCCGATCCGTCATCTCAAACAAACTTGTCTTTTTGCATCCATACATTGTCTCTACTTATTGAAGAAAAATGATTTTACTTATAAAAAATTAAAAGCAATTTGTTTCGTATTATTTTCGGAAAATTTGGCTTTGCCTGGAATACGACTATTTCAGCTATTAGCTGGATATATAGTTTCAAATGTCTCAAAAAGTTTTTCAGAGCCTTTTCAATGGCTCATGGACCAAAATTAGACTTCAAGGTTTGTCCTTCATCCCCAACCTAAGAATACAATAATTCTGAAAAGTTTGGAATTTCACAAATAAAACAATTGTTGGGATCATGTTTATTTTTTTAAAAACTAAAAGAGCGGCTGGAAGACTATAATAGCTCAAACACAAAATACAATTATGAGGTTTTTAAAGAAAATTTCGAAAAATGTACACATTTACGAATAACGTGATCAACACAGTTTTATGTTTCTGGTAAGGTTAAGTGAAGTATGAACAGAAAACACAATGTGAAGTGAATCTTGGGCTTATAACATATAAAAACAGCTTAAACTCAGGGCTTCCGGAAATTCATTTTAAAATTAGTTTTCCTTCGTTGCATATTACCACTGGATGACGGACTGGGATTCACATTTGACGAAAAAGAGCTGGACGACCCTTCCTGGCAATCAGAGGAATTCAGATTGGACGAAAAAGAGCTTGATTGTTCTTCCTGGCGATCTATAACA</canonical>
            <polymorphic>TTCGTCCTCCTCCTCCCATGCCGATGCAACATGCTTAAATCGAAACTGGTCTAAAACGTCGTGTCATCCATTTCATCCCCACACTTTCAATACATTTTCTCAAAAATTACAATGTTGCCTTTGTTTGAAAGATATCCCTATTGAATTTTTTCTTAATAATCCGTTTGTCTACTATAAAATCAAAACACCCATTGCCATTCATTCAAAATGAGAACCCAATCAAAAATCTCCCACACTTATCATGTACCATCTCGTTTCATCCTTCTTACTGCTATTTTCAAATCCCGATCCGTCATCTCAAACAAACTTGTCTTTTTGCATCCATACATTGTCTCTACTTATTGAAGAAAAATGATTTTACTTATAAAAAATTAAAAGCAATTTGTTTCGTATTATTTTCGGAAAATTTGGCTTTGCCTGGAATACGACTATTTCAGCTATTAGCTGGATATATAGTTTCAAATGTCTCAAAAAGTTTTTCAGAGCCTTTTCAATGGCTMATGGACCAAAATTAGACTTCAAGGTTTGTCCTTCATCCCCAACCTAAGAATACAATAATTCTGAAAAGTTTGGAATTTCACAAATAAAACAATTGTTGGGATCATGTTTATTTTTTTAAAAACTAAAAGAGCGGCTGGAAGACTATAATAGCTCAAACACAAAATACAATTATGAGGTTTTTAAAGAAAATTTCGAAAAATGTACACATTTACGAATAACGTGATCAACACAGTTTTATGTTTCTGGTAAGGTTAAGTGAAGTATGAACAGAAAACACAATGTGAAGTGAATCTTGGGCTTATAACATATAAAAACAGCTTAAACTCAGGGCTTCCGGAAATTCATTTTAAAATTAGTTTTCCTTCGTTGCATATTACCACTGGATGACGGACTGGGATTCACATTTGACGAAAAAGAGCTGGACGACCCTTCCTGGCAATCAGAGGAATTCAGATTGGACGAAAAAGAGCTTGATTGTTCTTCCTGGCGATCTATAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>397 259 211 103 17 13</canonical_bands>
                <polymorphic_bands>397 362 211 17 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAAAAGCAATTTGTTTCGTATT</pcr_primer_p1>
		<pcr_primer_p2>AAATAAACATGATCCCAACAAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTAAAAGCAATTTGTTTCGTATTATTTTCGGAAAATTTGGCTTTGCCTGGAATACGACTATTTCAGCTATTAGCTGGATATATAGTTTCAAATGTCTCAAAAAGTTTTTCAGAGCCTTTTCAATGGCTCATGGACCAAAATTAGACTTCAAGGTTTGTCCTTCATCCCCAACCTAAGAATACAATAATTCTGAAAAGTTTGGAATTTCACAAATAAAACAATTGTTGGGATCATGTTTATTT</canonical_amplicon>
		<polymorphic_amplicon>TTAAAAGCAATTTGTTTCGTATTATTTTCGGAAAATTTGGCTTTGCCTGGAATACGACTATTTCAGCTATTAGCTGGATATATAGTTTCAAATGTCTCAAAAAGTTTTTCAGAGCCTTTTCAATGGCTMATGGACCAAAATTAGACTTCAAGGTTTGTCCTTCATCCCCAACCTAAGAATACAATAATTCTGAAAAGTTTGGAATTTCACAAATAAAACAATTGTTGGGATCATGTTTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20292</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>552245</contig_pos>
        <strand>+</strand>
        <context>GGTGGTGTTT[A/G]CAGAAATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTAGAAAAAATATCTTTTTGCATTGACGCAATTGTTCGTGGTGGTGTTT</left_flank>
        <right_flank>CAGAAATTTTGTCATCATGGGTTAGACGGCATTTTGCGTGTGTAGGAAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACATTGGCGAAAAGAGTAGAATGCCGGACGCTGAGATACTTTTCCAAGTCTTCAAACTTCGAATCCTTGAGTTCCAAGCTGATTTTTAGGTCTTCATGAGGGTGACTCGAACTTGAATAGGTCAATTCCAAATACTTCTTCCTGCTGAACTTCACTTCCATTTGTCCTTTGTGACGTTTGGCTGGTCTTATTGAAAGTGAACGAGACCATTTGGAAGTCTCGCTGAAATTGTATCTGAAAACAAAAGTTCATTATAAAAATTATGCAGAACAAAACTCACAAATCGTAGCACTCCAGAAGGTCTAAAATTTTTTCTTGAACCAGTTCCGGAAAACGGATGAAGTCGATTGGCATTTTAGTCTGTAAAAGAAACAAATAGATGAAAATTATGTTCATTGAAACTGTTCATTGAAACTGTAAATGAAAGCAGAGAGACATGTAAATGGTTCGTAGAAAAAATATCTTTTTGCATTGACGCAATTGTTCGTGGTGGTGTTTACAGAAATTTTGTCATCATGGGTTAGACGGCATTTTGCGTGTGTAGGAAAAACGGGAGAGACGGATGAGTCACTAGCACAATTCTATGTTTTGTTTTTCAAAAAAAAAAAACAATATGTGCTAAAATAGTAAATTTCGAGCATTCTTCTTGTATTGCGCTCCCAGGCAGATAACAGACAGAGAGATAGTCACTCATCAGCTACAAACCAATCTCGATTATTCTAATCTGGCATCCCAATGTTACTATTAGAGTAGTACCAATTTGCTAATAGACACCAAGTAGGCCATTTAGAATGAGAGAAGACATCATTCTCCGTGTGTTATTGTTTATGACAGCTGTGGATTGATACAGTATGACTAAGGAATGTCTAACGGCAATGACAACTGTAATGGTATCAAATACCGAGATAAAGGTTTAGAATTTTTTAAAAACATAAATCTCAAGAAAATAAATAAAAACGTGTATTGAAGTTAGATATATTCAGTCTAATGCAACAAAAT</canonical>
            <polymorphic>CACATTGGCGAAAAGAGTAGAATGCCGGACGCTGAGATACTTTTCCAAGTCTTCAAACTTCGAATCCTTGAGTTCCAAGCTGATTTTTAGGTCTTCATGAGGGTGACTCGAACTTGAATAGGTCAATTCCAAATACTTCTTCCTGCTGAACTTCACTTCCATTTGTCCTTTGTGACGTTTGGCTGGTCTTATTGAAAGTGAACGAGACCATTTGGAAGTCTCGCTGAAATTGTATCTGAAAACAAAAGTTCATTATAAAAATTATGCAGAACAAAACTCACAAATCGTAGCACTCCAGAAGGTCTAAAATTTTTTCTTGAACCAGTTCCGGAAAACGGATGAAGTCGATTGGCATTTTAGTCTGTAAAAGAAACAAATAGATGAAAATTATGTTCATTGAAACTGTTCATTGAAACTGTAAATGAAAGCAGAGAGACATGTAAATGGTTCGTAGAAAAAATATCTTTTTGCATTGACGCAATTGTTCGTGGTGGTGTTTRCAGAAATTTTGTCATCATGGGTTAGACGGCATTTTGCGTGTGTAGGAAAAACGGGAGAGACGGATGAGTCACTAGCACAATTCTATGTTTTGTTTTTCAAAAAAAAAAAACAATATGTGCTAAAATAGTAAATTTCGAGCATTCTTCTTGTATTGCGCTCCCAGGCAGATAACAGACAGAGAGATAGTCACTCATCAGCTACAAACCAATCTCGATTATTCTAATCTGGCATCCCAATGTTACTATTAGAGTAGTACCAATTTGCTAATAGACACCAAGTAGGCCATTTAGAATGAGAGAAGACATCATTCTCCGTGTGTTATTGTTTATGACAGCTGTGGATTGATACAGTATGACTAAGGAATGTCTAACGGCAATGACAACTGTAATGGTATCAAATACCGAGATAAAGGTTTAGAATTTTTTAAAAACATAAATCTCAAGAAAATAAATAAAAACGTGTATTGAAGTTAGATATATTCAGTCTAATGCAACAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 298 200</canonical_bands>
                <polymorphic_bands>800 200</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGGCATTTTAGTCTGTAAAAG</pcr_primer_p1>
		<pcr_primer_p2>AAAACAAAACATAGAATTGTGCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTGGCATTTTAGTCTGTAAAAGAAACAAATAGATGAAAATTATGTTCATTGAAACTGTTCATTGAAACTGTAAATGAAAGCAGAGAGACATGTAAATGGTTCGTAGAAAAAATATCTTTTTGCATTGACGCAATTGTTCGTGGTGGTGTTTACAGAAATTTTGTCATCATGGGTTAGACGGCATTTTGCGTGTGTAGGAAAAACGGGAGAGACGGATGAGTCACTAGCACAATTCTATGTTTTGTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTGGCATTTTAGTCTGTAAAAGAAACAAATAGATGAAAATTATGTTCATTGAAACTGTTCATTGAAACTGTAAATGAAAGCAGAGAGACATGTAAATGGTTCGTAGAAAAAATATCTTTTTGCATTGACGCAATTGTTCGTGGTGGTGTTTRCAGAAATTTTGTCATCATGGGTTAGACGGCATTTTGCGTGTGTAGGAAAAACGGGAGAGACGGATGAGTCACTAGCACAATTCTATGTTTTGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20293</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>559352</contig_pos>
        <strand>+</strand>
        <context>TTTGGAATTT[A/T]GAAAGGGTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTAAAAGGAGAATGAAAACAGAGAGTGAAAGAGACGAATTTTGGAATTT</left_flank>
        <right_flank>GAAAGGGTGGAATTTCGTGGAAGGGAGGCCTTATCCGGATTTAAATGGGG</right_flank>
        <qual_score>145</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAGAATTTCGATAACTTCCGACTATATGAATCCAAAAGAATGATTTCACGGCATCTGTTGAAAACATTGATCACATGCCAGGCTGAGACCCATTTGGAAGATAATATCTGGAGTATTTCGTTTTCCAAACTTTCAGAGAAAGGCGTCTTGAAGTCGAAAATATTCTTGAAATTCTCCGTTGGTTGACAGTGGAGCTTGAGATGCCTTGCTTTTTTGAGTGGCACGTTCGGACGATCGCTTCATTATCTGGAACACAAGTGACAGCATAAATTTTGCAGAACGACATCTCACAAATCGTAGCACTCCATAATTTCTTTTTTAACCACACCCGGAAACCGGGTGAAAGCAAGTGGCATTCTTGTTCTGTAAAAAAAATTCAAAAGTCATGTGCACATCAAAGGGTTTCTTAGAATGTGTGAAGAGAACAAGAATGGTAATCACGTTGGTGTAAAAGGAGAATGAAAACAGAGAGTGAAAGAGACGAATTTTGGAATTTAGAAAGGGTGGAATTTCGTGGAAGGGAGGCCTTATCCGGATTTAAATGGGGAAAAACGACAATGTGCGTTATTAAAAATAGAGGGAATAGGCGGAGTGGTAACTAAGAAACGACGAACTACTATTCTCTTCTCCAAAACGTTTACGAGCACTACACACGTTTATGGAAAAGAGAAAGGGGCGAGAAATCTCGATAGCATTGTGATAGAGAATATTTGGGCAAATGTGCGTCCAAAAAGTCCAGGAAGCGTGAATGTTGGTTGTAACCACTGCAGCAGAACATTATTTTCATAATTTGAGAAAGAAGCTGAGGTGAATAGAGATAAGTAAAGATTGCTGCTATCGTTTTTTTTAAATTATTTGCTTTTTTTGAATTAACTAGCATCTGATACTCTAGGAACCGGTGCTTTTAGATAAGATCAAATTGGAATCTATCAGTCAGGTGGTCACTTTTGAGTACACTCAATTTTTGACTTCATACGTGAGACGGAAATTGGAAAAT</canonical>
            <polymorphic>TTTCAGAATTTCGATAACTTCCGACTATATGAATCCAAAAGAATGATTTCACGGCATCTGTTGAAAACATTGATCACATGCCAGGCTGAGACCCATTTGGAAGATAATATCTGGAGTATTTCGTTTTCCAAACTTTCAGAGAAAGGCGTCTTGAAGTCGAAAATATTCTTGAAATTCTCCGTTGGTTGACAGTGGAGCTTGAGATGCCTTGCTTTTTTGAGTGGCACGTTCGGACGATCGCTTCATTATCTGGAACACAAGTGACAGCATAAATTTTGCAGAACGACATCTCACAAATCGTAGCACTCCATAATTTCTTTTTTAACCACACCCGGAAACCGGGTGAAAGCAAGTGGCATTCTTGTTCTGTAAAAAAAATTCAAAAGTCATGTGCACATCAAAGGGTTTCTTAGAATGTGTGAAGAGAACAAGAATGGTAATCACGTTGGTGTAAAAGGAGAATGAAAACAGAGAGTGAAAGAGACGAATTTTGGAATTTWGAAAGGGTGGAATTTCGTGGAAGGGAGGCCTTATCCGGATTTAAATGGGGAAAAACGACAATGTGCGTTATTAAAAATAGAGGGAATAGGCGGAGTGGTAACTAAGAAACGACGAACTACTATTCTCTTCTCCAAAACGTTTACGAGCACTACACACGTTTATGGAAAAGAGAAAGGGGCGAGAAATCTCGATAGCATTGTGATAGAGAATATTTGGGCAAATGTGCGTCCAAAAAGTCCAGGAAGCGTGAATGTTGGTTGTAACCACTGCAGCAGAACATTATTTTCATAATTTGAGAAAGAAGCTGAGGTGAATAGAGATAAGTAAAGATTGCTGCTATCGTTTTTTTTAAATTATTTGCTTTTTTTGAATTAACTAGCATCTGATACTCTAGGAACCGGTGCTTTTAGATAAGATCAAATTGGAATCTATCAGTCAGGTGGTCACTTTTGAGTACACTCAATTTTTGACTTCATACGTGAGACGGAAATTGGAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGAGAACAAGAATGGTAATCA</pcr_primer_p1>
		<pcr_primer_p2>TCTTTTCCATAAACGTGTGTAGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAAGAGAACAAGAATGGTAATCACGTTGGTGTAAAAGGAGAATGAAAACAGAGAGTGAAAGAGACGAATTTTGGAATTTAGAAAGGGTGGAATTTCGTGGAAGGGAGGCCTTATCCGGATTTAAATGGGGAAAAACGACAATGTGCGTTATTAAAAATAGAGGGAATAGGCGGAGTGGTAACTAAGAAACGACGAACTACTATTCTCTTCTCCAAAACGTTTACGAGCACTACACACGTTTATGGAAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GAAGAGAACAAGAATGGTAATCACGTTGGTGTAAAAGGAGAATGAAAACAGAGAGTGAAAGAGACGAATTTTGGAATTTWGAAAGGGTGGAATTTCGTGGAAGGGAGGCCTTATCCGGATTTAAATGGGGAAAAACGACAATGTGCGTTATTAAAAATAGAGGGAATAGGCGGAGTGGTAACTAAGAAACGACGAACTACTATTCTCTTCTCCAAAACGTTTACGAGCACTACACACGTTTATGGAAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20295</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>559639</contig_pos>
        <strand>+</strand>
        <context>AACATTATTT[G/T]CATAATTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTCCAGGAAGCGTGAATGTTGGTTGTAACCACTGCAGCAGAACATTATTT</left_flank>
        <right_flank>CATAATTTGAGAAAGAAGCTGAGGTGAATAGAGATAAGTAAAGATTGCTG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTCACAAATCGTAGCACTCCATAATTTCTTTTTTAACCACACCCGGAAACCGGGTGAAAGCAAGTGGCATTCTTGTTCTGTAAAAAAAATTCAAAAGTCATGTGCACATCAAAGGGTTTCTTAGAATGTGTGAAGAGAACAAGAATGGTAATCACGTTGGTGTAAAAGGAGAATGAAAACAGAGAGTGAAAGAGACGAATTTTGGAATTTAGAAAGGGTGGAATTTCGTGGAAGGGAGGCCTTATCCGGATTTAAATGGGGAAAAACGACAATGTGCGTTATTAAAAATAGAGGGAATAGGCGGAGTGGTAACTAAGAAACGACGAACTACTATTCTCTTCTCCAAAACGTTTACGAGCACTACACACGTTTATGGAAAAGAGAAAGGGGCGAGAAATCTCGATAGCATTGTGATAGAGAATATTTGGGCAAATGTGCGTCCAAAAAGTCCAGGAAGCGTGAATGTTGGTTGTAACCACTGCAGCAGAACATTATTTTCATAATTTGAGAAAGAAGCTGAGGTGAATAGAGATAAGTAAAGATTGCTGCTATCGTTTTTTTTAAATTATTTGCTTTTTTTGAATTAACTAGCATCTGATACTCTAGGAACCGGTGCTTTTAGATAAGATCAAATTGGAATCTATCAGTCAGGTGGTCACTTTTGAGTACACTCAATTTTTGACTTCATACGTGAGACGGAAATTGGAAAATTGAGCTTATATTGTGCGTTTAATAAGTTTGGAGCCCCGTATATTATACACTGTAAATACAGTTCAATTTCAAATGTGAAATAACCCTAGAACAAAATTTTTTTCCTCCATTTTTGGTGTCTCCGCAAAAGACATCTTTTCAGGCGTGCAATAAGTTTTGAACCCCTTTAGACTTTTGAAATTTTGAATTTTTTTGGCCGATTTTTGGTTTCTAAACTGAAAATTACTTAACTTTTAGTTTTTTTTTCCGTACGATTTCATAAGTATTTCAAAGAATTATCATATTTT</canonical>
            <polymorphic>ATCTCACAAATCGTAGCACTCCATAATTTCTTTTTTAACCACACCCGGAAACCGGGTGAAAGCAAGTGGCATTCTTGTTCTGTAAAAAAAATTCAAAAGTCATGTGCACATCAAAGGGTTTCTTAGAATGTGTGAAGAGAACAAGAATGGTAATCACGTTGGTGTAAAAGGAGAATGAAAACAGAGAGTGAAAGAGACGAATTTTGGAATTTAGAAAGGGTGGAATTTCGTGGAAGGGAGGCCTTATCCGGATTTAAATGGGGAAAAACGACAATGTGCGTTATTAAAAATAGAGGGAATAGGCGGAGTGGTAACTAAGAAACGACGAACTACTATTCTCTTCTCCAAAACGTTTACGAGCACTACACACGTTTATGGAAAAGAGAAAGGGGCGAGAAATCTCGATAGCATTGTGATAGAGAATATTTGGGCAAATGTGCGTCCAAAAAGTCCAGGAAGCGTGAATGTTGGTTGTAACCACTGCAGCAGAACATTATTTKCATAATTTGAGAAAGAAGCTGAGGTGAATAGAGATAAGTAAAGATTGCTGCTATCGTTTTTTTTAAATTATTTGCTTTTTTTGAATTAACTAGCATCTGATACTCTAGGAACCGGTGCTTTTAGATAAGATCAAATTGGAATCTATCAGTCAGGTGGTCACTTTTGAGTACACTCAATTTTTGACTTCATACGTGAGACGGAAATTGGAAAATTGAGCTTATATTGTGCGTTTAATAAGTTTGGAGCCCCGTATATTATACACTGTAAATACAGTTCAATTTCAAATGTGAAATAACCCTAGAACAAAATTTTTTTCCTCCATTTTTGGTGTCTCCGCAAAAGACATCTTTTCAGGCGTGCAATAAGTTTTGAACCCCTTTAGACTTTTGAAATTTTGAATTTTTTTGGCCGATTTTTGGTTTCTAAACTGAAAATTACTTAACTTTTAGTTTTTTTTTCCGTACGATTTCATAAGTATTTCAAAGAATTATCATATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTACACACGTTTATGGAAAAGAG</pcr_primer_p1>
		<pcr_primer_p2>GTTCCTAGAGTATCAGATGCTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTACACACGTTTATGGAAAAGAGAAAGGGGCGAGAAATCTCGATAGCATTGTGATAGAGAATATTTGGGCAAATGTGCGTCCAAAAAGTCCAGGAAGCGTGAATGTTGGTTGTAACCACTGCAGCAGAACATTATTTTCATAATTTGAGAAAGAAGCTGAGGTGAATAGAGATAAGTAAAGATTGCTGCTATCGTTTTTTTTAAATTATTTGCTTTTTTTGAATTAACTAGCATCTGATACTCTAGGAAC</canonical_amplicon>
		<polymorphic_amplicon>CTACACACGTTTATGGAAAAGAGAAAGGGGCGAGAAATCTCGATAGCATTGTGATAGAGAATATTTGGGCAAATGTGCGTCCAAAAAGTCCAGGAAGCGTGAATGTTGGTTGTAACCACTGCAGCAGAACATTATTTKCATAATTTGAGAAAGAAGCTGAGGTGAATAGAGATAAGTAAAGATTGCTGCTATCGTTTTTTTTAAATTATTTGCTTTTTTTGAATTAACTAGCATCTGATACTCTAGGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20297</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>559677</contig_pos>
        <strand>+</strand>
        <context>ATAGAGATAA[C/G]TAAAGATTGC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGAACATTATTTTCATAATTTGAGAAAGAAGCTGAGGTGAATAGAGATAA</left_flank>
        <right_flank>TAAAGATTGCTGCTATCGTTTTTTTTAAATTATTTGCTTTTTTTGAATTA</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACACCCGGAAACCGGGTGAAAGCAAGTGGCATTCTTGTTCTGTAAAAAAAATTCAAAAGTCATGTGCACATCAAAGGGTTTCTTAGAATGTGTGAAGAGAACAAGAATGGTAATCACGTTGGTGTAAAAGGAGAATGAAAACAGAGAGTGAAAGAGACGAATTTTGGAATTTAGAAAGGGTGGAATTTCGTGGAAGGGAGGCCTTATCCGGATTTAAATGGGGAAAAACGACAATGTGCGTTATTAAAAATAGAGGGAATAGGCGGAGTGGTAACTAAGAAACGACGAACTACTATTCTCTTCTCCAAAACGTTTACGAGCACTACACACGTTTATGGAAAAGAGAAAGGGGCGAGAAATCTCGATAGCATTGTGATAGAGAATATTTGGGCAAATGTGCGTCCAAAAAGTCCAGGAAGCGTGAATGTTGGTTGTAACCACTGCAGCAGAACATTATTTTCATAATTTGAGAAAGAAGCTGAGGTGAATAGAGATAAGTAAAGATTGCTGCTATCGTTTTTTTTAAATTATTTGCTTTTTTTGAATTAACTAGCATCTGATACTCTAGGAACCGGTGCTTTTAGATAAGATCAAATTGGAATCTATCAGTCAGGTGGTCACTTTTGAGTACACTCAATTTTTGACTTCATACGTGAGACGGAAATTGGAAAATTGAGCTTATATTGTGCGTTTAATAAGTTTGGAGCCCCGTATATTATACACTGTAAATACAGTTCAATTTCAAATGTGAAATAACCCTAGAACAAAATTTTTTTCCTCCATTTTTGGTGTCTCCGCAAAAGACATCTTTTCAGGCGTGCAATAAGTTTTGAACCCCTTTAGACTTTTGAAATTTTGAATTTTTTTGGCCGATTTTTGGTTTCTAAACTGAAAATTACTTAACTTTTAGTTTTTTTTTCCGTACGATTTCATAAGTATTTCAAAGAATTATCATATTTTGTCGACTTTTGAAATCAAAGATTTCTAAAGTCGATGGT</canonical>
            <polymorphic>CCACACCCGGAAACCGGGTGAAAGCAAGTGGCATTCTTGTTCTGTAAAAAAAATTCAAAAGTCATGTGCACATCAAAGGGTTTCTTAGAATGTGTGAAGAGAACAAGAATGGTAATCACGTTGGTGTAAAAGGAGAATGAAAACAGAGAGTGAAAGAGACGAATTTTGGAATTTAGAAAGGGTGGAATTTCGTGGAAGGGAGGCCTTATCCGGATTTAAATGGGGAAAAACGACAATGTGCGTTATTAAAAATAGAGGGAATAGGCGGAGTGGTAACTAAGAAACGACGAACTACTATTCTCTTCTCCAAAACGTTTACGAGCACTACACACGTTTATGGAAAAGAGAAAGGGGCGAGAAATCTCGATAGCATTGTGATAGAGAATATTTGGGCAAATGTGCGTCCAAAAAGTCCAGGAAGCGTGAATGTTGGTTGTAACCACTGCAGCAGAACATTATTTTCATAATTTGAGAAAGAAGCTGAGGTGAATAGAGATAASTAAAGATTGCTGCTATCGTTTTTTTTAAATTATTTGCTTTTTTTGAATTAACTAGCATCTGATACTCTAGGAACCGGTGCTTTTAGATAAGATCAAATTGGAATCTATCAGTCAGGTGGTCACTTTTGAGTACACTCAATTTTTGACTTCATACGTGAGACGGAAATTGGAAAATTGAGCTTATATTGTGCGTTTAATAAGTTTGGAGCCCCGTATATTATACACTGTAAATACAGTTCAATTTCAAATGTGAAATAACCCTAGAACAAAATTTTTTTCCTCCATTTTTGGTGTCTCCGCAAAAGACATCTTTTCAGGCGTGCAATAAGTTTTGAACCCCTTTAGACTTTTGAAATTTTGAATTTTTTTGGCCGATTTTTGGTTTCTAAACTGAAAATTACTTAACTTTTAGTTTTTTTTTCCGTACGATTTCATAAGTATTTCAAAGAATTATCATATTTTGTCGACTTTTGAAATCAAAGATTTCTAAAGTCGATGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTACACACGTTTATGGAAAAGAG</pcr_primer_p1>
		<pcr_primer_p2>GTTCCTAGAGTATCAGATGCTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTACACACGTTTATGGAAAAGAGAAAGGGGCGAGAAATCTCGATAGCATTGTGATAGAGAATATTTGGGCAAATGTGCGTCCAAAAAGTCCAGGAAGCGTGAATGTTGGTTGTAACCACTGCAGCAGAACATTATTTTCATAATTTGAGAAAGAAGCTGAGGTGAATAGAGATAAGTAAAGATTGCTGCTATCGTTTTTTTTAAATTATTTGCTTTTTTTGAATTAACTAGCATCTGATACTCTAGGAAC</canonical_amplicon>
		<polymorphic_amplicon>CTACACACGTTTATGGAAAAGAGAAAGGGGCGAGAAATCTCGATAGCATTGTGATAGAGAATATTTGGGCAAATGTGCGTCCAAAAAGTCCAGGAAGCGTGAATGTTGGTTGTAACCACTGCAGCAGAACATTATTTTCATAATTTGAGAAAGAAGCTGAGGTGAATAGAGATAASTAAAGATTGCTGCTATCGTTTTTTTTAAATTATTTGCTTTTTTTGAATTAACTAGCATCTGATACTCTAGGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20298</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>559706</contig_pos>
        <strand></strand>
        <context>WTTTTTTTAA[A/T]TTATTTGCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGCTGAGGTGAATAGAGATAAGTAAAGATTGCTGCTATCGTTTTTTTTAA</left_flank>
        <right_flank>TTATTTGCTTTTTTTGAATTAACTAGCATCTGATACTCTAGGAACCGGTG</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCATTCTTGTTCTGTAAAAAAAATTCAAAAGTCATGTGCACATCAAAGGGTTTCTTAGAATGTGTGAAGAGAACAAGAATGGTAATCACGTTGGTGTAAAAGGAGAATGAAAACAGAGAGTGAAAGAGACGAATTTTGGAATTTAGAAAGGGTGGAATTTCGTGGAAGGGAGGCCTTATCCGGATTTAAATGGGGAAAAACGACAATGTGCGTTATTAAAAATAGAGGGAATAGGCGGAGTGGTAACTAAGAAACGACGAACTACTATTCTCTTCTCCAAAACGTTTACGAGCACTACACACGTTTATGGAAAAGAGAAAGGGGCGAGAAATCTCGATAGCATTGTGATAGAGAATATTTGGGCAAATGTGCGTCCAAAAAGTCCAGGAAGCGTGAATGTTGGTTGTAACCACTGCAGCAGAACATTATTTTCATAATTTGAGAAAGAAGCTGAGGTGAATAGAGATAAGTAAAGATTGCTGCTATCGTTTTTTTTAAATTATTTGCTTTTTTTGAATTAACTAGCATCTGATACTCTAGGAACCGGTGCTTTTAGATAAGATCAAATTGGAATCTATCAGTCAGGTGGTCACTTTTGAGTACACTCAATTTTTGACTTCATACGTGAGACGGAAATTGGAAAATTGAGCTTATATTGTGCGTTTAATAAGTTTGGAGCCCCGTATATTATACACTGTAAATACAGTTCAATTTCAAATGTGAAATAACCCTAGAACAAAATTTTTTTCCTCCATTTTTGGTGTCTCCGCAAAAGACATCTTTTCAGGCGTGCAATAAGTTTTGAACCCCTTTAGACTTTTGAAATTTTGAATTTTTTTGGCCGATTTTTGGTTTCTAAACTGAAAATTACTTAACTTTTAGTTTTTTTTTCCGTACGATTTCATAAGTATTTCAAAGAATTATCATATTTTGTCGACTTTTGAAATCAAAGATTTCTAAAGTCGATGGTGGTGTCACTGGTCGGTGTCACAGTTTCGA</canonical>
            <polymorphic>GGCATTCTTGTTCTGTAAAAAAAATTCAAAAGTCATGTGCACATCAAAGGGTTTCTTAGAATGTGTGAAGAGAACAAGAATGGTAATCACGTTGGTGTAAAAGGAGAATGAAAACAGAGAGTGAAAGAGACGAATTTTGGAATTTAGAAAGGGTGGAATTTCGTGGAAGGGAGGCCTTATCCGGATTTAAATGGGGAAAAACGACAATGTGCGTTATTAAAAATAGAGGGAATAGGCGGAGTGGTAACTAAGAAACGACGAACTACTATTCTCTTCTCCAAAACGTTTACGAGCACTACACACGTTTATGGAAAAGAGAAAGGGGCGAGAAATCTCGATAGCATTGTGATAGAGAATATTTGGGCAAATGTGCGTCCAAAAAGTCCAGGAAGCGTGAATGTTGGTTGTAACCACTGCAGCAGAACATTATTTTCATAATTTGAGAAAGAAGCTGAGGTGAATAGAGATAAGTAAAGATTGCTGCTATCGTTTTTTTTAAWTTATTTGCTTTTTTTGAATTAACTAGCATCTGATACTCTAGGAACCGGTGCTTTTAGATAAGATCAAATTGGAATCTATCAGTCAGGTGGTCACTTTTGAGTACACTCAATTTTTGACTTCATACGTGAGACGGAAATTGGAAAATTGAGCTTATATTGTGCGTTTAATAAGTTTGGAGCCCCGTATATTATACACTGTAAATACAGTTCAATTTCAAATGTGAAATAACCCTAGAACAAAATTTTTTTCCTCCATTTTTGGTGTCTCCGCAAAAGACATCTTTTCAGGCGTGCAATAAGTTTTGAACCCCTTTAGACTTTTGAAATTTTGAATTTTTTTGGCCGATTTTTGGTTTCTAAACTGAAAATTACTTAACTTTTAGTTTTTTTTTCCGTACGATTTCATAAGTATTTCAAAGAATTATCATATTTTGTCGACTTTTGAAATCAAAGATTTCTAAAGTCGATGGTGGTGTCACTGGTCGGTGTCACAGTTTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>503 309 188</canonical_bands>
                <polymorphic_bands>812 188</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>280 110 84 81 67 62 53 50 42 35 30 27 22 18 16 8 8 7</canonical_bands>
                <polymorphic_bands>280 110 84 81 80 67 53 50 42 35 30 27 22 16 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATAATTTGAGAAAGAAGCTGAG</pcr_primer_p1>
		<pcr_primer_p2>CCAAACTTATTAAACGCACAAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CATAATTTGAGAAAGAAGCTGAGGTGAATAGAGATAAGTAAAGATTGCTGCTATCGTTTTTTTTAAATTATTTGCTTTTTTTGAATTAACTAGCATCTGATACTCTAGGAACCGGTGCTTTTAGATAAGATCAAATTGGAATCTATCAGTCAGGTGGTCACTTTTGAGTACACTCAATTTTTGACTTCATACGTGAGACGGAAATTGGAAAATTGAGCTTATATTGTGCGTTTAATAAGTTTGG</canonical_amplicon>
		<polymorphic_amplicon>CATAATTTGAGAAAGAAGCTGAGGTGAATAGAGATAAGTAAAGATTGCTGCTATCGTTTTTTTTAAWTTATTTGCTTTTTTTGAATTAACTAGCATCTGATACTCTAGGAACCGGTGCTTTTAGATAAGATCAAATTGGAATCTATCAGTCAGGTGGTCACTTTTGAGTACACTCAATTTTTGACTTCATACGTGAGACGGAAATTGGAAAATTGAGCTTATATTGTGCGTTTAATAAGTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20299</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>561582</contig_pos>
        <strand>+</strand>
        <context>GGACTTTGTT[G/T]GCCAGAGATC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCCACTTTGACCAAAAAAGTTTCCAATTTTTGACTTCCGAGGACTTTGTT</left_flank>
        <right_flank>GCCAGAGATCTCCCGATTTCATCCCGAAACCCGTAGATTGTTGGTCGGCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACAAGAAATTGCCTGCTCGAGCATTCTTAGTACTGCAACAACGGTGAATCACAATCGAGGACCAACGTGCCGTGAGCTTCGTTGTCCTGGTACGCAATAACAGCTCGAACTCCGGTATTGTCTTGTGCGATCACGAAACAGTTTGGCAGCATCGCTGGAACCCTGAAACAACTTTTTTGGTTGAGGAGTCTGAAAATATCGACAAGAAAACTCACATGAACTGATAAGGAAATGGACGAAATCCATCGAAAAAATAATCGCCCTCGAGTTCTCTGAAAATCTGTGCTCCGTACCACCTCTGACCGACGTTCAAGCGCAATTTTCGGATTGAAGATCCCGTTTTCCAATGTTTCAAAATGCGAATCACGTCCAATTGATCAAAGCTGCTGTTATGGAGCAAGAGTTCCTTGCATTTTTTGAAGTTTTTCATTATAATTTCCGGTGTGACCCACTTTGACCAAAAAAGTTTCCAATTTTTGACTTCCGAGGACTTTGTTGGCCAGAGATCTCCCGATTTCATCCCGAAACCCGTAGATTGTTGGTCGGCACATCAGACTCAATGAAGTTGTTTCACTGCACAATGAAATTGATTTCATAATTAGCTGATTACCAGTATATTCTTCCAAGATCAGGTTCGTTACTGGAACCTTTGACAGGTGCACAATGTCAAGGATAGCGGCAACAAAATTGGAGCTTCCGAGATGTTTGAATGAAATTGCAATCTTCAGATTCCCAGTAAATAGAGGAAAGTACTGTTTGATGTAATCTTTGAATTTCTCCAGTTGTGATTCCTCGAACTCGGGGGCCGGGGGGGGGGGGGGGGGGTCGAAGAGCAAGTCTCGAAACCTGTCGCGATCTTTTTGATAATATTCCCAAATTGAGACTGAAAAAAGATCCAATACTTATAAATAAGTGATATATAAGAACTTACAGATCAGCGAGATGCAATTCGCCAGCAATTCTGTCAATTACAGAAACAGGAAAACCAAAGAAATCTA</canonical>
            <polymorphic>ACACAAGAAATTGCCTGCTCGAGCATTCTTAGTACTGCAACAACGGTGAATCACAATCGAGGACCAACGTGCCGTGAGCTTCGTTGTCCTGGTACGCAATAACAGCTCGAACTCCGGTATTGTCTTGTGCGATCACGAAACAGTTTGGCAGCATCGCTGGAACCCTGAAACAACTTTTTTGGTTGAGGAGTCTGAAAATATCGACAAGAAAACTCACATGAACTGATAAGGAAATGGACGAAATCCATCGAAAAAATAATCGCCCTCGAGTTCTCTGAAAATCTGTGCTCCGTACCACCTCTGACCGACGTTCAAGCGCAATTTTCGGATTGAAGATCCCGTTTTCCAATGTTTCAAAATGCGAATCACGTCCAATTGATCAAAGCTGCTGTTATGGAGCAAGAGTTCCTTGCATTTTTTGAAGTTTTTCATTATAATTTCCGGTGTGACCCACTTTGACCAAAAAAGTTTCCAATTTTTGACTTCCGAGGACTTTGTTKGCCAGAGATCTCCCGATTTCATCCCGAAACCCGTAGATTGTTGGTCGGCACATCAGACTCAATGAAGTTGTTTCACTGCACAATGAAATTGATTTCATAATTAGCTGATTACCAGTATATTCTTCCAAGATCAGGTTCGTTACTGGAACCTTTGACAGGTGCACAATGTCAAGGATAGCGGCAACAAAATTGGAGCTTCCGAGATGTTTGAATGAAATTGCAATCTTCAGATTCCCAGTAAATAGAGGAAAGTACTGTTTGATGTAATCTTTGAATTTCTCCAGTTGTGATTCCTCGAACTCGGGGGCCGGGGGGGGGGGGGGGGGGTCGAAGAGCAAGTCTCGAAACCTGTCGCGATCTTTTTGATAATATTCCCAAATTGAGACTGAAAAAAGATCCAATACTTATAAATAAGTGATATATAAGAACTTACAGATCAGCGAGATGCAATTCGCCAGCAATTCTGTCAATTACAGAAACAGGAAAACCAAAGAAATCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGGCCA</site>
                <isoschizomers>
                    <enzyme>BalI</enzyme>
                    <enzyme>MlsI</enzyme>
                    <enzyme>MluNI</enzyme>
                    <enzyme>MscI</enzyme>
                    <enzyme>Msp20I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 306 193</canonical_bands>
                <polymorphic_bands>807 193</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>280 193 116 112 103 91 78 27</canonical_bands>
                <polymorphic_bands>280 219 193 112 91 78 27</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTATGGAGCAAGAGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CTGATCTTGGAAGAATATACTGG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TGTTATGGAGCAAGAGTTCCTTGCATTTTTTGAAGTTTTTCATTATAATTTCCGGTGTGACCCACTTTGACCAAAAAAGTTTCCAATTTTTGACTTCCGAGGACTTTGTTGGCCAGAGATCTCCCGATTTCATCCCGAAACCCGTAGATTGTTGGTCGGCACATCAGACTCAATGAAGTTGTTTCACTGCACAATGAAATTGATTTCATAATTAGCTGATTACCAGTATATTCTTCCAAGATCAG</canonical_amplicon>
		<polymorphic_amplicon>TGTTATGGAGCAAGAGTTCCTTGCATTTTTTGAAGTTTTTCATTATAATTTCCGGTGTGACCCACTTTGACCAAAAAAGTTTCCAATTTTTGACTTCCGAGGACTTTGTTKGCCAGAGATCTCCCGATTTCATCCCGAAACCCGTAGATTGTTGGTCGGCACATCAGACTCAATGAAGTTGTTTCACTGCACAATGAAATTGATTTCATAATTAGCTGATTACCAGTATATTCTTCCAAGATCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20301</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>632552</contig_pos>
        <strand>+</strand>
        <context>CCATTCGTAG[C/T]STAATTAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCCGCACAGGAAATAGTTGGAATTGTGAAGAAGGGCAACCCATTCGTAG</left_flank>
        <right_flank>CTAATTAAAACTGACCCCCTCTGAAATATTTATCGACCCCGGTCCACCCC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGATTTTTAACCAACCGACCGAAAAACAGTTGGGAAAAAATAGAAAAAATAAGGAAAGAAAACGAAGAAGCGAGAAAAAGTTTCTTTGTTAAATTCAATAAAAACATGATATTCTTTTGGTTTCACGGGAATCCATATGTTTTTTTTGGTGTATTTCCATTCATTTCTTGCTGGGTTTTTGAATCTAGAACATCAAAATCGGAACCACCATTTTTAATGGGGCCCATAAAAGTTTCTTGCATGAATACTTGAGAAGATGGCGACCCATTATCTAGCAAGCTCATCAGCAATCATTTTTGATCCCAAAAAACGTCTCTAATATCCTTTCTTCTTATGTTTTGAAGATTTCAAAATGAAACTATTAAAAAAAAAAGAAAAAAAATCATAATTTCTTTTGGGGTTCTGCAGAAGTCGAAGAAAAAAGAAAACGCGAGGCTTGATCAGCAAACCCCGCACAGGAAATAGTTGGAATTGTGAAGAAGGGCAACCCATTCGTAGCCTAATTAAAACTGACCCCCTCTGAAATATTTATCGACCCCGGTCCACCCCGAAATATTGGGTTGTTGTCAATCTTTTGTTGGGAGAAACACCAGACACGAGAATATGAGTTTTCCGAAAAGAAGTACATCAAAATTATATTTGAAAAAGAAAGAGTCAATTCAGTTTTTCGCACAAAAAATGTGATTTTGGAATGCTTACACTCATATTCTCAGCTGACAAGCTTTTTAGACCAACAACCAAGGATCAGTAGAATAATCGAAAAACGTTTTATAAATATTTTTGACACTTTTGACGGAAATTGAGAGTATTTCCGATCTCATAATGAACAATAAAATAGTTTTATCAAAACTTTTGTTTTTTTTTCGAAAATTGACTTAAAATTTTGTTTTTTGTTTAAAATCCATTTTTGAGCAATTCGGTGACACTGAAAACTGTTCACTTTTAAATACCGTATTTTCTCTGATAGAAGCTCATTTTATGCGTACACTTTGAGCTTTA</canonical>
            <polymorphic>ACGATTTTTAACCAACCGACCGAAAAACAGTTGGGAAAAAATAGAAAAAATAAGGAAAGAAAACGAAGAAGCGAGAAAAAGTTTCTTTGTTAAATTCAATAAAAACATGATATTCTTTTGGTTTCACGGGAATCCATATGTTTTTTTTGGTGTATTTCCATTCATTTCTTGCTGGGTTTTTGAATCTAGAACATCAAAATCGGAACCACCATTTTTAATGGGGCCCATAAAAGTTTCTTGCATGAATACTTGAGAAGATGGCGACCCATTATCTAGCAAGCTCATCAGCAATCATTTTTGATCCCAAAAAACGTCTCTAATATCCTTTCTTCTTATGTTTTGAAGATTTCAAAATGAAACTATTAAAAAAAAAAGAAAAAAAATCATAATTTCTTTTGGGGTTCTGCAGAAGTCGAAGAAAAAAGAAAACGCGAGGCTTGATCAGCAAACCCCGCACAGGAAATAGTTGGAATTGTGAAGAAGGGCAACCCATTCGTAGYCTAATTAAAACTGACCCCCTCTGAAATATTTATCGACCCCGGTCCACCCCGAAATATTGGGTTGTTGTCAATCTTTTGTTGGGAGAAACACCAGACACGAGAATATGAGTTTTCCGAAAAGAAGTACATCAAAATTATATTTGAAAAAGAAAGAGTCAATTCAGTTTTTCGCACAAAAAATGTGATTTTGGAATGCTTACACTCATATTCTCAGCTGACAAGCTTTTTAGACCAACAACCAAGGATCAGTAGAATAATCGAAAAACGTTTTATAAATATTTTTGACACTTTTGACGGAAATTGAGAGTATTTCCGATCTCATAATGAACAATAAAATAGTTTTATCAAAACTTTTGTTTTTTTTTCGAAAATTGACTTAAAATTTTGTTTTTTGTTTAAAATCCATTTTTGAGCAATTCGGTGACACTGAAAACTGTTCACTTTTAAATACCGTATTTTCTCTGATAGAAGCTCATTTTATGCGTACACTTTGAGCTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>249 223 215 156 63 57 24 8 5</canonical_bands>
                <polymorphic_bands>278 249 223 156 57 24 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTTTCTTCTTATGTTTTGAAG</pcr_primer_p1>
		<pcr_primer_p2>ATTGACAACAACCCAATATTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCTTTCTTCTTATGTTTTGAAGATTTCAAAATGAAACTATTAAAAAAAAAAGAAAAAAAATCATAATTTCTTTTGGGGTTCTGCAGAAGTCGAAGAAAAAAGAAAACGCGAGGCTTGATCAGCAAACCCCGCACAGGAAATAGTTGGAATTGTGAAGAAGGGCAACCCATTCGTAGCCTAATTAAAACTGACCCCCTCTGAAATATTTATCGACCCCGGTCCACCCCGAAATATTGGGTTGTTGTCAAT</canonical_amplicon>
		<polymorphic_amplicon>TCCTTTCTTCTTATGTTTTGAAGATTTCAAAATGAAACTATTAAAAAAAAAAGAAAAAAAATCATAATTTCTTTTGGGGTTCTGCAGAAGTCGAAGAAAAAAGAAAACGCGAGGCTTGATCAGCAAACCCCGCACAGGAAATAGTTGGAATTGTGAAGAAGGGCAACCCATTCGTAGYCTAATTAAAACTGACCCCCTCTGAAATATTTATCGACCCCGGTCCACCCCGAAATATTGGGTTGTTGTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20302</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>632553</contig_pos>
        <strand>+</strand>
        <context>CATTCGTAGY[C/G]TAATTAAAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCCGCACAGGAAATAGTTGGAATTGTGAAGAAGGGCAACCCATTCGTAGC</left_flank>
        <right_flank>TAATTAAAACTGACCCCCTCTGAAATATTTATCGACCCCGGTCCACCCCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATTTTTAACCAACCGACCGAAAAACAGTTGGGAAAAAATAGAAAAAATAAGGAAAGAAAACGAAGAAGCGAGAAAAAGTTTCTTTGTTAAATTCAATAAAAACATGATATTCTTTTGGTTTCACGGGAATCCATATGTTTTTTTTGGTGTATTTCCATTCATTTCTTGCTGGGTTTTTGAATCTAGAACATCAAAATCGGAACCACCATTTTTAATGGGGCCCATAAAAGTTTCTTGCATGAATACTTGAGAAGATGGCGACCCATTATCTAGCAAGCTCATCAGCAATCATTTTTGATCCCAAAAAACGTCTCTAATATCCTTTCTTCTTATGTTTTGAAGATTTCAAAATGAAACTATTAAAAAAAAAAGAAAAAAAATCATAATTTCTTTTGGGGTTCTGCAGAAGTCGAAGAAAAAAGAAAACGCGAGGCTTGATCAGCAAACCCCGCACAGGAAATAGTTGGAATTGTGAAGAAGGGCAACCCATTCGTAGCCTAATTAAAACTGACCCCCTCTGAAATATTTATCGACCCCGGTCCACCCCGAAATATTGGGTTGTTGTCAATCTTTTGTTGGGAGAAACACCAGACACGAGAATATGAGTTTTCCGAAAAGAAGTACATCAAAATTATATTTGAAAAAGAAAGAGTCAATTCAGTTTTTCGCACAAAAAATGTGATTTTGGAATGCTTACACTCATATTCTCAGCTGACAAGCTTTTTAGACCAACAACCAAGGATCAGTAGAATAATCGAAAAACGTTTTATAAATATTTTTGACACTTTTGACGGAAATTGAGAGTATTTCCGATCTCATAATGAACAATAAAATAGTTTTATCAAAACTTTTGTTTTTTTTTCGAAAATTGACTTAAAATTTTGTTTTTTGTTTAAAATCCATTTTTGAGCAATTCGGTGACACTGAAAACTGTTCACTTTTAAATACCGTATTTTCTCTGATAGAAGCTCATTTTATGCGTACACTTTGAGCTTTAT</canonical>
            <polymorphic>CGATTTTTAACCAACCGACCGAAAAACAGTTGGGAAAAAATAGAAAAAATAAGGAAAGAAAACGAAGAAGCGAGAAAAAGTTTCTTTGTTAAATTCAATAAAAACATGATATTCTTTTGGTTTCACGGGAATCCATATGTTTTTTTTGGTGTATTTCCATTCATTTCTTGCTGGGTTTTTGAATCTAGAACATCAAAATCGGAACCACCATTTTTAATGGGGCCCATAAAAGTTTCTTGCATGAATACTTGAGAAGATGGCGACCCATTATCTAGCAAGCTCATCAGCAATCATTTTTGATCCCAAAAAACGTCTCTAATATCCTTTCTTCTTATGTTTTGAAGATTTCAAAATGAAACTATTAAAAAAAAAAGAAAAAAAATCATAATTTCTTTTGGGGTTCTGCAGAAGTCGAAGAAAAAAGAAAACGCGAGGCTTGATCAGCAAACCCCGCACAGGAAATAGTTGGAATTGTGAAGAAGGGCAACCCATTCGTAGCSTAATTAAAACTGACCCCCTCTGAAATATTTATCGACCCCGGTCCACCCCGAAATATTGGGTTGTTGTCAATCTTTTGTTGGGAGAAACACCAGACACGAGAATATGAGTTTTCCGAAAAGAAGTACATCAAAATTATATTTGAAAAAGAAAGAGTCAATTCAGTTTTTCGCACAAAAAATGTGATTTTGGAATGCTTACACTCATATTCTCAGCTGACAAGCTTTTTAGACCAACAACCAAGGATCAGTAGAATAATCGAAAAACGTTTTATAAATATTTTTGACACTTTTGACGGAAATTGAGAGTATTTCCGATCTCATAATGAACAATAAAATAGTTTTATCAAAACTTTTGTTTTTTTTTCGAAAATTGACTTAAAATTTTGTTTTTTGTTTAAAATCCATTTTTGAGCAATTCGGTGACACTGAAAACTGTTCACTTTTAAATACCGTATTTTCTCTGATAGAAGCTCATTTTATGCGTACACTTTGAGCTTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>249 222 215 156 63 57 24 8 6</canonical_bands>
                <polymorphic_bands>278 249 222 156 57 24 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTTTCTTCTTATGTTTTGAAG</pcr_primer_p1>
		<pcr_primer_p2>ATTGACAACAACCCAATATTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCTTTCTTCTTATGTTTTGAAGATTTCAAAATGAAACTATTAAAAAAAAAAGAAAAAAAATCATAATTTCTTTTGGGGTTCTGCAGAAGTCGAAGAAAAAAGAAAACGCGAGGCTTGATCAGCAAACCCCGCACAGGAAATAGTTGGAATTGTGAAGAAGGGCAACCCATTCGTAGCCTAATTAAAACTGACCCCCTCTGAAATATTTATCGACCCCGGTCCACCCCGAAATATTGGGTTGTTGTCAAT</canonical_amplicon>
		<polymorphic_amplicon>TCCTTTCTTCTTATGTTTTGAAGATTTCAAAATGAAACTATTAAAAAAAAAAGAAAAAAAATCATAATTTCTTTTGGGGTTCTGCAGAAGTCGAAGAAAAAAGAAAACGCGAGGCTTGATCAGCAAACCCCGCACAGGAAATAGTTGGAATTGTGAAGAAGGGCAACCCATTCGTAGCSTAATTAAAACTGACCCCCTCTGAAATATTTATCGACCCCGGTCCACCCCGAAATATTGGGTTGTTGTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20304</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>633968</contig_pos>
        <strand>+</strand>
        <context>CTTTCACCAA[A/T]AAAAGTTATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTGCCGCCTTTCACCAA</left_flank>
        <right_flank>AAAAGTTATCGCTGGGGGGTCGGAAGATGTCGCAGCGTTTCTTCCGCAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTCAATTTTCTGGATTTCTGTATTGTTGAAGATTCGAAACACCGTAGCCAATTTCAGGCCTAGCTAGTTCTTAAATTCAAATATCAAAACGTTTGTACTAAACAATAGGAAACAAAAAAAGGAACATCTTTTTCACAGACCCAACTGAACGACTCAAAATGAAGCCATCCTCCATTTTTCCATCGTCAGCTTAAAGCTGCGCAGCTTATACCTCCTCATTTCGCCAACACCCCATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTGCCGCCTTTCACCAAAAAAAGTTATCGCTGGGGGGTCGGAAGATGTCGCAGCGTTTCTTCCGCAATTCGCCGCACCCAAATTATCGGCTATTTAAAGAGAAGAGGGGGGGGGGTCTGGGAGAGAGACGGGGTCTTTTTTCCCGGGGAGAAATTTTTGCAGTGCTGGAGGGCACACTTGTCAAAAAAAATTGTTGTATGTGCTCCTCTCCCGGAATTGTACATAGAAAAAGAGTTGCATGATTTATGACAACGATCTTGGCTTGAATATGCTGGTGCAAAACTCGTAAATGCACTGATTTCACAAAAAAAGGGAACTAGGAACACAGTAGAAAAAAGAACACCCAAGAGAGAGGTTGGGAGCTCTTTGTAGAATTTATGGGTCGCGATGATTTTGTGTGTGATTGCACTCTAGAGATTTATGTCCCTTATATTTTCTCATGTATATGTAGACATGATATTTTAGTCAAGGGAATAATAGGAGGAAGATAATTCAATTATTCTTCTGTTCCTCCGAAT</canonical>
            <polymorphic>ATTTTCAATTTTCTGGATTTCTGTATTGTTGAAGATTCGAAACACCGTAGCCAATTTCAGGCCTAGCTAGTTCTTAAATTCAAATATCAAAACGTTTGTACTAAACAATAGGAAACAAAAAAAGGAACATCTTTTTCACAGACCCAACTGAACGACTCAAAATGAAGCCATCCTCCATTTTTCCATCGTCAGCTTAAAGCTGCGCAGCTTATACCTCCTCATTTCGCCAACACCCCATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTGCCGCCTTTCACCAAWAAAAGTTATCGCTGGGGGGTCGGAAGATGTCGCAGCGTTTCTTCCGCAATTCGCCGCACCCAAATTATCGGCTATTTAAAGAGAAGAGGGGGGGGGGTCTGGGAGAGAGACGGGGTCTTTTTTCCCGGGGAGAAATTTTTGCAGTGCTGGAGGGCACACTTGTCAAAAAAAATTGTTGTATGTGCTCCTCTCCCGGAATTGTACATAGAAAAAGAGTTGCATGATTTATGACAACGATCTTGGCTTGAATATGCTGGTGCAAAACTCGTAAATGCACTGATTTCACAAAAAAAGGGAACTAGGAACACAGTAGAAAAAAGAACACCCAAGAGAGAGGTTGGGAGCTCTTTGTAGAATTTATGGGTCGCGATGATTTTGTGTGTGATTGCACTCTAGAGATTTATGTCCCTTATATTTTCTCATGTATATGTAGACATGATATTTTAGTCAAGGGAATAATAGGAGGAAGATAATTCAATTATTCTTCTGTTCCTCCGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCACAAGCTAAAAGTCATTTATT</pcr_primer_p1>
		<pcr_primer_p2>TCTTCTCTTTAAATAGCCGATAA</pcr_primer_p2>
		<pcr_amplicon_size>224</pcr_amplicon_size>
		<canonical_amplicon>GCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTGCCGCCTTTCACCAAAAAAAGTTATCGCTGGGGGGTCGGAAGATGTCGCAGCGTTTCTTCCGCAATTCGCCGCACCCAAATTATCGGCTATTTAAAGAGAAGA</canonical_amplicon>
		<polymorphic_amplicon>GCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTGCCGCCTTTCACCAAWAAAAGTTATCGCTGGGGGGTCGGAAGATGTCGCAGCGTTTCTTCCGCAATTCGCCGCACCCAAATTATCGGCTATTTAAAGAGAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20305</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>633858</contig_pos>
        <strand></strand>
        <context>ATTTATTAAT[G/A]TGTGAGCACA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAAT</left_flank>
        <right_flank>TGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTCACTGAATATCGGCTGAAAATGAATGAAAATTGGTTAAAAATCGAAAACTTTGAATTTTTGAATTTTCGGATTTTCCACTTTCTTGAAAATTCGATATTTGCCGAATTTTCAATTTTCTGGATTTCTGTATTGTTGAAGATTCGAAACACCGTAGCCAATTTCAGGCCTAGCTAGTTCTTAAATTCAAATATCAAAACGTTTGTACTAAACAATAGGAAACAAAAAAAGGAACATCTTTTTCACAGACCCAACTGAACGACTCAAAATGAAGCCATCCTCCATTTTTCCATCGTCAGCTTAAAGCTGCGCAGCTTATACCTCCTCATTTCGCCAACACCCCATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTGCCGCCTTTCACCAAAAAAAGTTATCGCTGGGGGGTCGGAAGATGTCGCAGCGTTTCTTCCGCAATTCGCCGCACCCAAATTATCGGCTATTTAAAGAGAAGAGGGGGGGGGGTCTGGGAGAGAGACGGGGTCTTTTTTCCCGGGGAGAAATTTTTGCAGTGCTGGAGGGCACACTTGTCAAAAAAAATTGTTGTATGTGCTCCTCTCCCGGAATTGTACATAGAAAAAGAGTTGCATGATTTATGACAACGATCTTGGCTTGAATATGCTGGTGCAAAACTCGTAAATGCACTGATTTCACAAAAAAAGGGAACTAGGAACACAGTAGAAAAAAGAACACCCAAGAGAGAGGTTGGGAGCTCTTTGTAGAATTTATGGGTCGCGATGATTTTGTGTGTGATTGCA</canonical>
            <polymorphic>AATTTCACTGAATATCGGCTGAAAATGAATGAAAATTGGTTAAAAATCGAAAACTTTGAATTTTTGAATTTTCGGATTTTCCACTTTCTTGAAAATTCGATATTTGCCGAATTTTCAATTTTCTGGATTTCTGTATTGTTGAAGATTCGAAACACCGTAGCCAATTTCAGGCCTAGCTAGTTCTTAAATTCAAATATCAAAACGTTTGTACTAAACAATAGGAAACAAAAAAAGGAACATCTTTTTCACAGACCCAACTGAACGACTCAAAATGAAGCCATCCTCCATTTTTCCATCGTCAGCTTAAAGCTGCGCAGCTTATACCTCCTCATTTCGCCAACACCCCATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATRTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTGCCGCCTTTCACCAAAAAAAGTTATCGCTGGGGGGTCGGAAGATGTCGCAGCGTTTCTTCCGCAATTCGCCGCACCCAAATTATCGGCTATTTAAAGAGAAGAGGGGGGGGGGTCTGGGAGAGAGACGGGGTCTTTTTTCCCGGGGAGAAATTTTTGCAGTGCTGGAGGGCACACTTGTCAAAAAAAATTGTTGTATGTGCTCCTCTCCCGGAATTGTACATAGAAAAAGAGTTGCATGATTTATGACAACGATCTTGGCTTGAATATGCTGGTGCAAAACTCGTAAATGCACTGATTTCACAAAAAAAGGGAACTAGGAACACAGTAGAAAAAAGAACACCCAAGAGAGAGGTTGGGAGCTCTTTGTAGAATTTATGGGTCGCGATGATTTTGTGTGTGATTGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>97 94 94 88 76 75 71 63 62 56 36 36 26 26 22 17 17 10 9 7 6 4 2 2 2 2</canonical_bands>
                <polymorphic_bands>97 94 94 88 76 75 71 63 62 56 36 36 28 26 22 17 17 10 9 7 6 4 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCATATCCGTTCTGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAAGTTAAAGGGTCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>ATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATRTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20306</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>633810</contig_pos>
        <strand>+</strand>
        <context>RAAAWTAGCG[A/C]CCAGAGRAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCG</left_flank>
        <right_flank>CCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTAGAAATTGATCACATGTAGCATTTTATCGGTCAAAAACTATTGAAATTTCACTGAATATCGGCTGAAAATGAATGAAAATTGGTTAAAAATCGAAAACTTTGAATTTTTGAATTTTCGGATTTTCCACTTTCTTGAAAATTCGATATTTGCCGAATTTTCAATTTTCTGGATTTCTGTATTGTTGAAGATTCGAAACACCGTAGCCAATTTCAGGCCTAGCTAGTTCTTAAATTCAAATATCAAAACGTTTGTACTAAACAATAGGAAACAAAAAAAGGAACATCTTTTTCACAGACCCAACTGAACGACTCAAAATGAAGCCATCCTCCATTTTTCCATCGTCAGCTTAAAGCTGCGCAGCTTATACCTCCTCATTTCGCCAACACCCCATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTGCCGCCTTTCACCAAAAAAAGTTATCGCTGGGGGGTCGGAAGATGTCGCAGCGTTTCTTCCGCAATTCGCCGCACCCAAATTATCGGCTATTTAAAGAGAAGAGGGGGGGGGGTCTGGGAGAGAGACGGGGTCTTTTTTCCCGGGGAGAAATTTTTGCAGTGCTGGAGGGCACACTTGTCAAAAAAAATTGTTGTATGTGCTCCTCTCCCGGAATTGTACATAGAAAAAGAGTTGCATGATTTATGACAACGATCTTGGCTTGAATATGCTGGTGCAAAACTCGTAAATGCACTGATTTCACAAAAAAAGGGAACTAGGAACACAGTAGAAAAAAGAACACCCAAGAGAGAGGTTGGG</canonical>
            <polymorphic>ATTTAGAAATTGATCACATGTAGCATTTTATCGGTCAAAAACTATTGAAATTTCACTGAATATCGGCTGAAAATGAATGAAAATTGGTTAAAAATCGAAAACTTTGAATTTTTGAATTTTCGGATTTTCCACTTTCTTGAAAATTCGATATTTGCCGAATTTTCAATTTTCTGGATTTCTGTATTGTTGAAGATTCGAAACACCGTAGCCAATTTCAGGCCTAGCTAGTTCTTAAATTCAAATATCAAAACGTTTGTACTAAACAATAGGAAACAAAAAAAGGAACATCTTTTTCACAGACCCAACTGAACGACTCAAAATGAAGCCATCCTCCATTTTTCCATCGTCAGCTTAAAGCTGCGCAGCTTATACCTCCTCATTTCGCCAACACCCCATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGMCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTGCCGCCTTTCACCAAAAAAAGTTATCGCTGGGGGGTCGGAAGATGTCGCAGCGTTTCTTCCGCAATTCGCCGCACCCAAATTATCGGCTATTTAAAGAGAAGAGGGGGGGGGGTCTGGGAGAGAGACGGGGTCTTTTTTCCCGGGGAGAAATTTTTGCAGTGCTGGAGGGCACACTTGTCAAAAAAAATTGTTGTATGTGCTCCTCTCCCGGAATTGTACATAGAAAAAGAGTTGCATGATTTATGACAACGATCTTGGCTTGAATATGCTGGTGCAAAACTCGTAAATGCACTGATTTCACAAAAAAAGGGAACTAGGAACACAGTAGAAAAAAGAACACCCAAGAGAGAGGTTGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 362 137</canonical_bands>
                <polymorphic_bands>638 362</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCATATCCGTTCTGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAAGTTAAAGGGTCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>ATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGMCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20307</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>633804</contig_pos>
        <strand>+</strand>
        <context>CTCCACRAAA[A/T]TAGCGMCCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAA</left_flank>
        <right_flank>TAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAAAATTTAGAAATTGATCACATGTAGCATTTTATCGGTCAAAAACTATTGAAATTTCACTGAATATCGGCTGAAAATGAATGAAAATTGGTTAAAAATCGAAAACTTTGAATTTTTGAATTTTCGGATTTTCCACTTTCTTGAAAATTCGATATTTGCCGAATTTTCAATTTTCTGGATTTCTGTATTGTTGAAGATTCGAAACACCGTAGCCAATTTCAGGCCTAGCTAGTTCTTAAATTCAAATATCAAAACGTTTGTACTAAACAATAGGAAACAAAAAAAGGAACATCTTTTTCACAGACCCAACTGAACGACTCAAAATGAAGCCATCCTCCATTTTTCCATCGTCAGCTTAAAGCTGCGCAGCTTATACCTCCTCATTTCGCCAACACCCCATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTGCCGCCTTTCACCAAAAAAAGTTATCGCTGGGGGGTCGGAAGATGTCGCAGCGTTTCTTCCGCAATTCGCCGCACCCAAATTATCGGCTATTTAAAGAGAAGAGGGGGGGGGGTCTGGGAGAGAGACGGGGTCTTTTTTCCCGGGGAGAAATTTTTGCAGTGCTGGAGGGCACACTTGTCAAAAAAAATTGTTGTATGTGCTCCTCTCCCGGAATTGTACATAGAAAAAGAGTTGCATGATTTATGACAACGATCTTGGCTTGAATATGCTGGTGCAAAACTCGTAAATGCACTGATTTCACAAAAAAAGGGAACTAGGAACACAGTAGAAAAAAGAACACCCAAGAGAGAG</canonical>
            <polymorphic>AGAAAAATTTAGAAATTGATCACATGTAGCATTTTATCGGTCAAAAACTATTGAAATTTCACTGAATATCGGCTGAAAATGAATGAAAATTGGTTAAAAATCGAAAACTTTGAATTTTTGAATTTTCGGATTTTCCACTTTCTTGAAAATTCGATATTTGCCGAATTTTCAATTTTCTGGATTTCTGTATTGTTGAAGATTCGAAACACCGTAGCCAATTTCAGGCCTAGCTAGTTCTTAAATTCAAATATCAAAACGTTTGTACTAAACAATAGGAAACAAAAAAAGGAACATCTTTTTCACAGACCCAACTGAACGACTCAAAATGAAGCCATCCTCCATTTTTCCATCGTCAGCTTAAAGCTGCGCAGCTTATACCTCCTCATTTCGCCAACACCCCATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAAWTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTGCCGCCTTTCACCAAAAAAAGTTATCGCTGGGGGGTCGGAAGATGTCGCAGCGTTTCTTCCGCAATTCGCCGCACCCAAATTATCGGCTATTTAAAGAGAAGAGGGGGGGGGGTCTGGGAGAGAGACGGGGTCTTTTTTCCCGGGGAGAAATTTTTGCAGTGCTGGAGGGCACACTTGTCAAAAAAAATTGTTGTATGTGCTCCTCTCCCGGAATTGTACATAGAAAAAGAGTTGCATGATTTATGACAACGATCTTGGCTTGAATATGCTGGTGCAAAACTCGTAAATGCACTGATTTCACAAAAAAAGGGAACTAGGAACACAGTAGAAAAAAGAACACCCAAGAGAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>257 214 140 71 46 41 37 33 27 26 25 24 16 15 8 8 7 5</canonical_bands>
                <polymorphic_bands>471 140 71 46 41 37 33 27 26 25 24 16 15 8 8 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCATATCCGTTCTGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAAGTTAAAGGGTCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>ATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAAWTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20308</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>633800</contig_pos>
        <strand>+</strand>
        <context>GCATCTCCAC[A/G]AAAWTAGCGM</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCAC</left_flank>
        <right_flank>AAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCAAGAAAAATTTAGAAATTGATCACATGTAGCATTTTATCGGTCAAAAACTATTGAAATTTCACTGAATATCGGCTGAAAATGAATGAAAATTGGTTAAAAATCGAAAACTTTGAATTTTTGAATTTTCGGATTTTCCACTTTCTTGAAAATTCGATATTTGCCGAATTTTCAATTTTCTGGATTTCTGTATTGTTGAAGATTCGAAACACCGTAGCCAATTTCAGGCCTAGCTAGTTCTTAAATTCAAATATCAAAACGTTTGTACTAAACAATAGGAAACAAAAAAAGGAACATCTTTTTCACAGACCCAACTGAACGACTCAAAATGAAGCCATCCTCCATTTTTCCATCGTCAGCTTAAAGCTGCGCAGCTTATACCTCCTCATTTCGCCAACACCCCATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTGCCGCCTTTCACCAAAAAAAGTTATCGCTGGGGGGTCGGAAGATGTCGCAGCGTTTCTTCCGCAATTCGCCGCACCCAAATTATCGGCTATTTAAAGAGAAGAGGGGGGGGGGTCTGGGAGAGAGACGGGGTCTTTTTTCCCGGGGAGAAATTTTTGCAGTGCTGGAGGGCACACTTGTCAAAAAAAATTGTTGTATGTGCTCCTCTCCCGGAATTGTACATAGAAAAAGAGTTGCATGATTTATGACAACGATCTTGGCTTGAATATGCTGGTGCAAAACTCGTAAATGCACTGATTTCACAAAAAAAGGGAACTAGGAACACAGTAGAAAAAAGAACACCCAAGAG</canonical>
            <polymorphic>CCCAAGAAAAATTTAGAAATTGATCACATGTAGCATTTTATCGGTCAAAAACTATTGAAATTTCACTGAATATCGGCTGAAAATGAATGAAAATTGGTTAAAAATCGAAAACTTTGAATTTTTGAATTTTCGGATTTTCCACTTTCTTGAAAATTCGATATTTGCCGAATTTTCAATTTTCTGGATTTCTGTATTGTTGAAGATTCGAAACACCGTAGCCAATTTCAGGCCTAGCTAGTTCTTAAATTCAAATATCAAAACGTTTGTACTAAACAATAGGAAACAAAAAAAGGAACATCTTTTTCACAGACCCAACTGAACGACTCAAAATGAAGCCATCCTCCATTTTTCCATCGTCAGCTTAAAGCTGCGCAGCTTATACCTCCTCATTTCGCCAACACCCCATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACRAAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTGCCGCCTTTCACCAAAAAAAGTTATCGCTGGGGGGTCGGAAGATGTCGCAGCGTTTCTTCCGCAATTCGCCGCACCCAAATTATCGGCTATTTAAAGAGAAGAGGGGGGGGGGTCTGGGAGAGAGACGGGGTCTTTTTTCCCGGGGAGAAATTTTTGCAGTGCTGGAGGGCACACTTGTCAAAAAAAATTGTTGTATGTGCTCCTCTCCCGGAATTGTACATAGAAAAAGAGTTGCATGATTTATGACAACGATCTTGGCTTGAATATGCTGGTGCAAAACTCGTAAATGCACTGATTTCACAAAAAAAGGGAACTAGGAACACAGTAGAAAAAAGAACACCCAAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCATATCCGTTCTGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAAGTTAAAGGGTCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>ATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACRAAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20309</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>633781</contig_pos>
        <strand></strand>
        <context>ACATGATTTA[T/C]TGAAAGATGC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTA</left_flank>
        <right_flank>TGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGAAAAAAAATACGAGG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTGGTTTTGGTAACTAACCCAAGAAAAATTTAGAAATTGATCACATGTAGCATTTTATCGGTCAAAAACTATTGAAATTTCACTGAATATCGGCTGAAAATGAATGAAAATTGGTTAAAAATCGAAAACTTTGAATTTTTGAATTTTCGGATTTTCCACTTTCTTGAAAATTCGATATTTGCCGAATTTTCAATTTTCTGGATTTCTGTATTGTTGAAGATTCGAAACACCGTAGCCAATTTCAGGCCTAGCTAGTTCTTAAATTCAAATATCAAAACGTTTGTACTAAACAATAGGAAACAAAAAAAGGAACATCTTTTTCACAGACCCAACTGAACGACTCAAAATGAAGCCATCCTCCATTTTTCCATCGTCAGCTTAAAGCTGCGCAGCTTATACCTCCTCATTTCGCCAACACCCCATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTGCCGCCTTTCACCAAAAAAAGTTATCGCTGGGGGGTCGGAAGATGTCGCAGCGTTTCTTCCGCAATTCGCCGCACCCAAATTATCGGCTATTTAAAGAGAAGAGGGGGGGGGGTCTGGGAGAGAGACGGGGTCTTTTTTCCCGGGGAGAAATTTTTGCAGTGCTGGAGGGCACACTTGTCAAAAAAAATTGTTGTATGTGCTCCTCTCCCGGAATTGTACATAGAAAAAGAGTTGCATGATTTATGACAACGATCTTGGCTTGAATATGCTGGTGCAAAACTCGTAAATGCACTGATTTCACAAAAAAAGGGAACTAGGAACACAGTAG</canonical>
            <polymorphic>ATCTGGTTTTGGTAACTAACCCAAGAAAAATTTAGAAATTGATCACATGTAGCATTTTATCGGTCAAAAACTATTGAAATTTCACTGAATATCGGCTGAAAATGAATGAAAATTGGTTAAAAATCGAAAACTTTGAATTTTTGAATTTTCGGATTTTCCACTTTCTTGAAAATTCGATATTTGCCGAATTTTCAATTTTCTGGATTTCTGTATTGTTGAAGATTCGAAACACCGTAGCCAATTTCAGGCCTAGCTAGTTCTTAAATTCAAATATCAAAACGTTTGTACTAAACAATAGGAAACAAAAAAAGGAACATCTTTTTCACAGACCCAACTGAACGACTCAAAATGAAGCCATCCTCCATTTTTCCATCGTCAGCTTAAAGCTGCGCAGCTTATACCTCCTCATTTCGCCAACACCCCATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTAYTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTGCCGCCTTTCACCAAAAAAAGTTATCGCTGGGGGGTCGGAAGATGTCGCAGCGTTTCTTCCGCAATTCGCCGCACCCAAATTATCGGCTATTTAAAGAGAAGAGGGGGGGGGGTCTGGGAGAGAGACGGGGTCTTTTTTCCCGGGGAGAAATTTTTGCAGTGCTGGAGGGCACACTTGTCAAAAAAAATTGTTGTATGTGCTCCTCTCCCGGAATTGTACATAGAAAAAGAGTTGCATGATTTATGACAACGATCTTGGCTTGAATATGCTGGTGCAAAACTCGTAAATGCACTGATTTCACAAAAAAAGGGAACTAGGAACACAGTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCATATCCGTTCTGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAAGTTAAAGGGTCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>ATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTAYTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20310</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>633557</contig_pos>
        <strand>+</strand>
        <context>TTCAAATATC[A/G]AAACGTTTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAACACCGTAGCCAATTTCAGGCCTAGCTAGTTCTTAAATTCAAATATC</left_flank>
        <right_flank>AAACGTTTGTACTAAACAATAGGAAACAAAAAAAGGAACATCTTTTTCAC</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGTCCCTATGAGATATATTAGAAATTTGTCAGATGATAAAATATTGGTGATATTATGATAAACAATTCATCAGTTGACTACTCTTTGATATCTTTGAGAGCAACCAAGATAAATTGGCTGAAAGTTATAAGTGAGGGGCCCTTCTAGTAGAGGTTTTTCAGTATTATTCTGAATTGAACTTCTTGAATTTTTTGAGAGAAAATTGAGAATTTTCAAAGAAAGATCTGGTTTTGGTAACTAACCCAAGAAAAATTTAGAAATTGATCACATGTAGCATTTTATCGGTCAAAAACTATTGAAATTTCACTGAATATCGGCTGAAAATGAATGAAAATTGGTTAAAAATCGAAAACTTTGAATTTTTGAATTTTCGGATTTTCCACTTTCTTGAAAATTCGATATTTGCCGAATTTTCAATTTTCTGGATTTCTGTATTGTTGAAGATTCGAAACACCGTAGCCAATTTCAGGCCTAGCTAGTTCTTAAATTCAAATATCAAAACGTTTGTACTAAACAATAGGAAACAAAAAAAGGAACATCTTTTTCACAGACCCAACTGAACGACTCAAAATGAAGCCATCCTCCATTTTTCCATCGTCAGCTTAAAGCTGCGCAGCTTATACCTCCTCATTTCGCCAACACCCCATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTGCCGCCTTTCACCAAAAAAAGTTATCGCTGGGGGGTCGGAAGATGTCGCAGCGTTTCTTCCGCAATTCGCCGCACCCAAATTATCGGCTATTTAAAGAGAAGAGG</canonical>
            <polymorphic>TCGGTCCCTATGAGATATATTAGAAATTTGTCAGATGATAAAATATTGGTGATATTATGATAAACAATTCATCAGTTGACTACTCTTTGATATCTTTGAGAGCAACCAAGATAAATTGGCTGAAAGTTATAAGTGAGGGGCCCTTCTAGTAGAGGTTTTTCAGTATTATTCTGAATTGAACTTCTTGAATTTTTTGAGAGAAAATTGAGAATTTTCAAAGAAAGATCTGGTTTTGGTAACTAACCCAAGAAAAATTTAGAAATTGATCACATGTAGCATTTTATCGGTCAAAAACTATTGAAATTTCACTGAATATCGGCTGAAAATGAATGAAAATTGGTTAAAAATCGAAAACTTTGAATTTTTGAATTTTCGGATTTTCCACTTTCTTGAAAATTCGATATTTGCCGAATTTTCAATTTTCTGGATTTCTGTATTGTTGAAGATTCGAAACACCGTAGCCAATTTCAGGCCTAGCTAGTTCTTAAATTCAAATATCRAAACGTTTGTACTAAACAATAGGAAACAAAAAAAGGAACATCTTTTTCACAGACCCAACTGAACGACTCAAAATGAAGCCATCCTCCATTTTTCCATCGTCAGCTTAAAGCTGCGCAGCTTATACCTCCTCATTTCGCCAACACCCCATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTGCCGCCTTTCACCAAAAAAAGTTATCGCTGGGGGGTCGGAAGATGTCGCAGCGTTTCTTCCGCAATTCGCCGCACCCAAATTATCGGCTATTTAAAGAGAAGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATGAAAATTGGTTAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>CTTCATTTTGAGTCGTTCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TGAATGAAAATTGGTTAAAAATCGAAAACTTTGAATTTTTGAATTTTCGGATTTTCCACTTTCTTGAAAATTCGATATTTGCCGAATTTTCAATTTTCTGGATTTCTGTATTGTTGAAGATTCGAAACACCGTAGCCAATTTCAGGCCTAGCTAGTTCTTAAATTCAAATATCAAAACGTTTGTACTAAACAATAGGAAACAAAAAAAGGAACATCTTTTTCACAGACCCAACTGAACGACTCAAAATGAAG</canonical_amplicon>
		<polymorphic_amplicon>TGAATGAAAATTGGTTAAAAATCGAAAACTTTGAATTTTTGAATTTTCGGATTTTCCACTTTCTTGAAAATTCGATATTTGCCGAATTTTCAATTTTCTGGATTTCTGTATTGTTGAAGATTCGAAACACCGTAGCCAATTTCAGGCCTAGCTAGTTCTTAAATTCAAATATCRAAACGTTTGTACTAAACAATAGGAAACAAAAAAAGGAACATCTTTTTCACAGACCCAACTGAACGACTCAAAATGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20352</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>778777</contig_pos>
        <strand>+</strand>
        <context>GAAAGGAAAA[A/T]CTGCTTGTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAAAAGAGAGGGCAAGTGCACAAAAGTTGATGGTGAGAAGAAAGGAAAA</left_flank>
        <right_flank>CTGCTTGTGCTTTTGCTTTTTTTTGCAAAAAAAGAATATTATGAATACGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTATAAACTCAAGAAGAAGTTGACGGGGCACATTTTTCATTTATGCTGTTGGAGAGTTAAGAAGAAGAAGAAAAAGGAAGAAGAAAAAACGGGAAAAGACGGGGGGCTCAGACCGAAAAAAAATGAGATGGAAAGCGGATAGAAACAAAAATGAGAATGCCGGGAGGAGAGGGACATTGAAACCCTCTTACTCGTGTCGTGGCAATTAATCGGTTTGTGTGCCAGCTGAAAAGGAGGATTTTATGAGATTTCAGAGGCGCATAGGAAATGGAATTTTCAAATCCCAAGCATTTTCCTGCCAATGCACCCATTGGTGAATGTTGTTTGCAAACGGTTCAAAGAATTTGAAATGAACTTGCTTTGCTCCCACCCCCTATTGAAATTTTCTTCATTCAAGTAGGCGGAAACTCTGAGTGCTTCTTTTCTGGAGCAGTGAGACGCGGCAGAAGAAAAGAGAGGGCAAGTGCACAAAAGTTGATGGTGAGAAGAAAGGAAAAACTGCTTGTGCTTTTGCTTTTTTTTGCAAAAAAAGAATATTATGAATACGTGTGTTTATGTGGTATATGAGAAGGGCAAAACATGGAAAACGTTTATAAAACAAAACTGAGTGTTCGGCCGGCTAAAAACAAAAGAAGAAATAAAATAAGATGATTTTCTTCTTCTCATAAGAAGAAAAAGAGCAAATTTCAAGGTGAGGGAGGTAAAAAGCAAAGTGATCCTCAGAAGAGATAGCACCTGTTTCTGACGAGAGACTCGGTTTTACACCGAGAAGTCAGCAGGGACATTATCGAATTTTTTCGCTCGGCTTTTCGCCTTCTTCCAGTATTTGACAATGATTTATGTGGCACCAGTTGTGAAATAGAAGAAGGAGATGAGGGGTAAAAGGTTCCTCATTTCATCAGCACTCTCTTAAGGGTCCATGAGGGGTACATTGGACTCTGGGTGCAGGATTGGATTGGAGAAAAAATGTATGTTTTAGTTTTGTGACAAGTGCAAAT</canonical>
            <polymorphic>ATGTATAAACTCAAGAAGAAGTTGACGGGGCACATTTTTCATTTATGCTGTTGGAGAGTTAAGAAGAAGAAGAAAAAGGAAGAAGAAAAAACGGGAAAAGACGGGGGGCTCAGACCGAAAAAAAATGAGATGGAAAGCGGATAGAAACAAAAATGAGAATGCCGGGAGGAGAGGGACATTGAAACCCTCTTACTCGTGTCGTGGCAATTAATCGGTTTGTGTGCCAGCTGAAAAGGAGGATTTTATGAGATTTCAGAGGCGCATAGGAAATGGAATTTTCAAATCCCAAGCATTTTCCTGCCAATGCACCCATTGGTGAATGTTGTTTGCAAACGGTTCAAAGAATTTGAAATGAACTTGCTTTGCTCCCACCCCCTATTGAAATTTTCTTCATTCAAGTAGGCGGAAACTCTGAGTGCTTCTTTTCTGGAGCAGTGAGACGCGGCAGAAGAAAAGAGAGGGCAAGTGCACAAAAGTTGATGGTGAGAAGAAAGGAAAAWCTGCTTGTGCTTTTGCTTTTTTTTGCAAAAAAAGAATATTATGAATACGTGTGTTTATGTGGTATATGAGAAGGGCAAAACATGGAAAACGTTTATAAAACAAAACTGAGTGTTCGGCCGGCTAAAAACAAAAGAAGAAATAAAATAAGATGATTTTCTTCTTCTCATAAGAAGAAAAAGAGCAAATTTCAAGGTGAGGGAGGTAAAAAGCAAAGTGATCCTCAGAAGAGATAGCACCTGTTTCTGACGAGAGACTCGGTTTTACACCGAGAAGTCAGCAGGGACATTATCGAATTTTTTCGCTCGGCTTTTCGCCTTCTTCCAGTATTTGACAATGATTTATGTGGCACCAGTTGTGAAATAGAAGAAGGAGATGAGGGGTAAAAGGTTCCTCATTTCATCAGCACTCTCTTAAGGGTCCATGAGGGGTACATTGGACTCTGGGTGCAGGATTGGATTGGAGAAAAAATGTATGTTTTAGTTTTGTGACAAGTGCAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAGAATTTGAAATGAACTTG</pcr_primer_p1>
		<pcr_primer_p2>ATGTTTTGCCCTTCTCATATAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCAAAGAATTTGAAATGAACTTGCTTTGCTCCCACCCCCTATTGAAATTTTCTTCATTCAAGTAGGCGGAAACTCTGAGTGCTTCTTTTCTGGAGCAGTGAGACGCGGCAGAAGAAAAGAGAGGGCAAGTGCACAAAAGTTGATGGTGAGAAGAAAGGAAAAACTGCTTGTGCTTTTGCTTTTTTTTGCAAAAAAAGAATATTATGAATACGTGTGTTTATGTGGTATATGAGAAGGGCAAAACAT</canonical_amplicon>
		<polymorphic_amplicon>TCAAAGAATTTGAAATGAACTTGCTTTGCTCCCACCCCCTATTGAAATTTTCTTCATTCAAGTAGGCGGAAACTCTGAGTGCTTCTTTTCTGGAGCAGTGAGACGCGGCAGAAGAAAAGAGAGGGCAAGTGCACAAAAGTTGATGGTGAGAAGAAAGGAAAAWCTGCTTGTGCTTTTGCTTTTTTTTGCAAAAAAAGAATATTATGAATACGTGTGTTTATGTGGTATATGAGAAGGGCAAAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20353</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>778993</contig_pos>
        <strand>+</strand>
        <context>AAAAGCAAAG[C/T]GATCCTCAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATAAGAAGAAAAAGAGCAAATTTCAAGGTGAGGGAGGTAAAAAGCAAAG</left_flank>
        <right_flank>GATCCTCAGAAGAGATAGCACCTGTTTCTGACGAGAGACTCGGTTTTACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTGTGCCAGCTGAAAAGGAGGATTTTATGAGATTTCAGAGGCGCATAGGAAATGGAATTTTCAAATCCCAAGCATTTTCCTGCCAATGCACCCATTGGTGAATGTTGTTTGCAAACGGTTCAAAGAATTTGAAATGAACTTGCTTTGCTCCCACCCCCTATTGAAATTTTCTTCATTCAAGTAGGCGGAAACTCTGAGTGCTTCTTTTCTGGAGCAGTGAGACGCGGCAGAAGAAAAGAGAGGGCAAGTGCACAAAAGTTGATGGTGAGAAGAAAGGAAAAACTGCTTGTGCTTTTGCTTTTTTTTGCAAAAAAAGAATATTATGAATACGTGTGTTTATGTGGTATATGAGAAGGGCAAAACATGGAAAACGTTTATAAAACAAAACTGAGTGTTCGGCCGGCTAAAAACAAAAGAAGAAATAAAATAAGATGATTTTCTTCTTCTCATAAGAAGAAAAAGAGCAAATTTCAAGGTGAGGGAGGTAAAAAGCAAAGTGATCCTCAGAAGAGATAGCACCTGTTTCTGACGAGAGACTCGGTTTTACACCGAGAAGTCAGCAGGGACATTATCGAATTTTTTCGCTCGGCTTTTCGCCTTCTTCCAGTATTTGACAATGATTTATGTGGCACCAGTTGTGAAATAGAAGAAGGAGATGAGGGGTAAAAGGTTCCTCATTTCATCAGCACTCTCTTAAGGGTCCATGAGGGGTACATTGGACTCTGGGTGCAGGATTGGATTGGAGAAAAAATGTATGTTTTAGTTTTGTGACAAGTGCAAATCACTTTGTACCTGGTTTGACAACCAGATTGGTCAGGTATTGATCAGAAAGATGTTAGAATTATATACTTGCACCTGGCGGGATCAGAATCAAACATTTTTGAATTGAAAATTCATACCTTACACTCTAATAGAAATACCTGACACTCTAATAAAATAATCTTCTTACTTTCAACTTTGAGCCAATTTATCTTGGTTTTTGCGACAGATATCAAAAA</canonical>
            <polymorphic>TTGTGTGCCAGCTGAAAAGGAGGATTTTATGAGATTTCAGAGGCGCATAGGAAATGGAATTTTCAAATCCCAAGCATTTTCCTGCCAATGCACCCATTGGTGAATGTTGTTTGCAAACGGTTCAAAGAATTTGAAATGAACTTGCTTTGCTCCCACCCCCTATTGAAATTTTCTTCATTCAAGTAGGCGGAAACTCTGAGTGCTTCTTTTCTGGAGCAGTGAGACGCGGCAGAAGAAAAGAGAGGGCAAGTGCACAAAAGTTGATGGTGAGAAGAAAGGAAAAACTGCTTGTGCTTTTGCTTTTTTTTGCAAAAAAAGAATATTATGAATACGTGTGTTTATGTGGTATATGAGAAGGGCAAAACATGGAAAACGTTTATAAAACAAAACTGAGTGTTCGGCCGGCTAAAAACAAAAGAAGAAATAAAATAAGATGATTTTCTTCTTCTCATAAGAAGAAAAAGAGCAAATTTCAAGGTGAGGGAGGTAAAAAGCAAAGYGATCCTCAGAAGAGATAGCACCTGTTTCTGACGAGAGACTCGGTTTTACACCGAGAAGTCAGCAGGGACATTATCGAATTTTTTCGCTCGGCTTTTCGCCTTCTTCCAGTATTTGACAATGATTTATGTGGCACCAGTTGTGAAATAGAAGAAGGAGATGAGGGGTAAAAGGTTCCTCATTTCATCAGCACTCTCTTAAGGGTCCATGAGGGGTACATTGGACTCTGGGTGCAGGATTGGATTGGAGAAAAAATGTATGTTTTAGTTTTGTGACAAGTGCAAATCACTTTGTACCTGGTTTGACAACCAGATTGGTCAGGTATTGATCAGAAAGATGTTAGAATTATATACTTGCACCTGGCGGGATCAGAATCAAACATTTTTGAATTGAAAATTCATACCTTACACTCTAATAGAAATACCTGACACTCTAATAAAATAATCTTCTTACTTTCAACTTTGAGCCAATTTATCTTGGTTTTTGCGACAGATATCAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>85 84 80 72 70 53 51 51 48 47 42 41 41 31 30 24 21 21 19 19 15 10 9 8 7 7 5 3 2 2 2</canonical_bands>
                <polymorphic_bands>85 84 80 72 70 53 51 51 48 47 42 41 41 40 31 30 24 21 19 15 10 9 8 7 7 5 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGTTTATAAAACAAAACTGAGTG</pcr_primer_p1>
		<pcr_primer_p2>ATCATTGTCAAATACTGGAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACGTTTATAAAACAAAACTGAGTGTTCGGCCGGCTAAAAACAAAAGAAGAAATAAAATAAGATGATTTTCTTCTTCTCATAAGAAGAAAAAGAGCAAATTTCAAGGTGAGGGAGGTAAAAAGCAAAGTGATCCTCAGAAGAGATAGCACCTGTTTCTGACGAGAGACTCGGTTTTACACCGAGAAGTCAGCAGGGACATTATCGAATTTTTTCGCTCGGCTTTTCGCCTTCTTCCAGTATTTGACAATGAT</canonical_amplicon>
		<polymorphic_amplicon>ACGTTTATAAAACAAAACTGAGTGTTCGGCCGGCTAAAAACAAAAGAAGAAATAAAATAAGATGATTTTCTTCTTCTCATAAGAAGAAAAAGAGCAAATTTCAAGGTGAGGGAGGTAAAAAGCAAAGYGATCCTCAGAAGAGATAGCACCTGTTTCTGACGAGAGACTCGGTTTTACACCGAGAAGTCAGCAGGGACATTATCGAATTTTTTCGCTCGGCTTTTCGCCTTCTTCCAGTATTTGACAATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20354</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>779063</contig_pos>
        <strand>+</strand>
        <context>CAGCAGGGAC[A/T]TTATCGAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCTGTTTCTGACGAGAGACTCGGTTTTACACCGAGAAGTCAGCAGGGAC</left_flank>
        <right_flank>TTATCGAATTTTTTCGCTCGGCTTTTCGCCTTCTTCCAGTATTTGACAAT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGCATTTTCCTGCCAATGCACCCATTGGTGAATGTTGTTTGCAAACGGTTCAAAGAATTTGAAATGAACTTGCTTTGCTCCCACCCCCTATTGAAATTTTCTTCATTCAAGTAGGCGGAAACTCTGAGTGCTTCTTTTCTGGAGCAGTGAGACGCGGCAGAAGAAAAGAGAGGGCAAGTGCACAAAAGTTGATGGTGAGAAGAAAGGAAAAACTGCTTGTGCTTTTGCTTTTTTTTGCAAAAAAAGAATATTATGAATACGTGTGTTTATGTGGTATATGAGAAGGGCAAAACATGGAAAACGTTTATAAAACAAAACTGAGTGTTCGGCCGGCTAAAAACAAAAGAAGAAATAAAATAAGATGATTTTCTTCTTCTCATAAGAAGAAAAAGAGCAAATTTCAAGGTGAGGGAGGTAAAAAGCAAAGTGATCCTCAGAAGAGATAGCACCTGTTTCTGACGAGAGACTCGGTTTTACACCGAGAAGTCAGCAGGGACATTATCGAATTTTTTCGCTCGGCTTTTCGCCTTCTTCCAGTATTTGACAATGATTTATGTGGCACCAGTTGTGAAATAGAAGAAGGAGATGAGGGGTAAAAGGTTCCTCATTTCATCAGCACTCTCTTAAGGGTCCATGAGGGGTACATTGGACTCTGGGTGCAGGATTGGATTGGAGAAAAAATGTATGTTTTAGTTTTGTGACAAGTGCAAATCACTTTGTACCTGGTTTGACAACCAGATTGGTCAGGTATTGATCAGAAAGATGTTAGAATTATATACTTGCACCTGGCGGGATCAGAATCAAACATTTTTGAATTGAAAATTCATACCTTACACTCTAATAGAAATACCTGACACTCTAATAAAATAATCTTCTTACTTTCAACTTTGAGCCAATTTATCTTGGTTTTTGCGACAGATATCAAAAAGCGATCAACTGACAAAATAATTTTCGTATCATAATCAGTATTTTGACAGTTGAGTACTTTTTGATATCTT</canonical>
            <polymorphic>CAAGCATTTTCCTGCCAATGCACCCATTGGTGAATGTTGTTTGCAAACGGTTCAAAGAATTTGAAATGAACTTGCTTTGCTCCCACCCCCTATTGAAATTTTCTTCATTCAAGTAGGCGGAAACTCTGAGTGCTTCTTTTCTGGAGCAGTGAGACGCGGCAGAAGAAAAGAGAGGGCAAGTGCACAAAAGTTGATGGTGAGAAGAAAGGAAAAACTGCTTGTGCTTTTGCTTTTTTTTGCAAAAAAAGAATATTATGAATACGTGTGTTTATGTGGTATATGAGAAGGGCAAAACATGGAAAACGTTTATAAAACAAAACTGAGTGTTCGGCCGGCTAAAAACAAAAGAAGAAATAAAATAAGATGATTTTCTTCTTCTCATAAGAAGAAAAAGAGCAAATTTCAAGGTGAGGGAGGTAAAAAGCAAAGTGATCCTCAGAAGAGATAGCACCTGTTTCTGACGAGAGACTCGGTTTTACACCGAGAAGTCAGCAGGGACWTTATCGAATTTTTTCGCTCGGCTTTTCGCCTTCTTCCAGTATTTGACAATGATTTATGTGGCACCAGTTGTGAAATAGAAGAAGGAGATGAGGGGTAAAAGGTTCCTCATTTCATCAGCACTCTCTTAAGGGTCCATGAGGGGTACATTGGACTCTGGGTGCAGGATTGGATTGGAGAAAAAATGTATGTTTTAGTTTTGTGACAAGTGCAAATCACTTTGTACCTGGTTTGACAACCAGATTGGTCAGGTATTGATCAGAAAGATGTTAGAATTATATACTTGCACCTGGCGGGATCAGAATCAAACATTTTTGAATTGAAAATTCATACCTTACACTCTAATAGAAATACCTGACACTCTAATAAAATAATCTTCTTACTTTCAACTTTGAGCCAATTTATCTTGGTTTTTGCGACAGATATCAAAAAGCGATCAACTGACAAAATAATTTTCGTATCATAATCAGTATTTTGACAGTTGAGTACTTTTTGATATCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGTTTATAAAACAAAACTGAGTG</pcr_primer_p1>
		<pcr_primer_p2>AATCATTGTCAAATACTGGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACGTTTATAAAACAAAACTGAGTGTTCGGCCGGCTAAAAACAAAAGAAGAAATAAAATAAGATGATTTTCTTCTTCTCATAAGAAGAAAAAGAGCAAATTTCAAGGTGAGGGAGGTAAAAAGCAAAGTGATCCTCAGAAGAGATAGCACCTGTTTCTGACGAGAGACTCGGTTTTACACCGAGAAGTCAGCAGGGACATTATCGAATTTTTTCGCTCGGCTTTTCGCCTTCTTCCAGTATTTGACAATGATT</canonical_amplicon>
		<polymorphic_amplicon>ACGTTTATAAAACAAAACTGAGTGTTCGGCCGGCTAAAAACAAAAGAAGAAATAAAATAAGATGATTTTCTTCTTCTCATAAGAAGAAAAAGAGCAAATTTCAAGGTGAGGGAGGTAAAAAGCAAAGTGATCCTCAGAAGAGATAGCACCTGTTTCTGACGAGAGACTCGGTTTTACACCGAGAAGTCAGCAGGGACWTTATCGAATTTTTTCGCTCGGCTTTTCGCCTTCTTCCAGTATTTGACAATGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20355</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>779174</contig_pos>
        <strand>+</strand>
        <context>GGTTCCTCAT[C/T]TCATCAGCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCACCAGTTGTGAAATAGAAGAAGGAGATGAGGGGTAAAAGGTTCCTCAT</left_flank>
        <right_flank>TCATCAGCACTCTCTTAAGGGTCCATGAGGGGTACATTGGACTCTGGGTG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTAGGCGGAAACTCTGAGTGCTTCTTTTCTGGAGCAGTGAGACGCGGCAGAAGAAAAGAGAGGGCAAGTGCACAAAAGTTGATGGTGAGAAGAAAGGAAAAACTGCTTGTGCTTTTGCTTTTTTTTGCAAAAAAAGAATATTATGAATACGTGTGTTTATGTGGTATATGAGAAGGGCAAAACATGGAAAACGTTTATAAAACAAAACTGAGTGTTCGGCCGGCTAAAAACAAAAGAAGAAATAAAATAAGATGATTTTCTTCTTCTCATAAGAAGAAAAAGAGCAAATTTCAAGGTGAGGGAGGTAAAAAGCAAAGTGATCCTCAGAAGAGATAGCACCTGTTTCTGACGAGAGACTCGGTTTTACACCGAGAAGTCAGCAGGGACATTATCGAATTTTTTCGCTCGGCTTTTCGCCTTCTTCCAGTATTTGACAATGATTTATGTGGCACCAGTTGTGAAATAGAAGAAGGAGATGAGGGGTAAAAGGTTCCTCATTTCATCAGCACTCTCTTAAGGGTCCATGAGGGGTACATTGGACTCTGGGTGCAGGATTGGATTGGAGAAAAAATGTATGTTTTAGTTTTGTGACAAGTGCAAATCACTTTGTACCTGGTTTGACAACCAGATTGGTCAGGTATTGATCAGAAAGATGTTAGAATTATATACTTGCACCTGGCGGGATCAGAATCAAACATTTTTGAATTGAAAATTCATACCTTACACTCTAATAGAAATACCTGACACTCTAATAAAATAATCTTCTTACTTTCAACTTTGAGCCAATTTATCTTGGTTTTTGCGACAGATATCAAAAAGCGATCAACTGACAAAATAATTTTCGTATCATAATCAGTATTTTGACAGTTGAGTACTTTTTGATATCTTTCACAGGAAATGAGGTACAGTACCGGTAAATAAGATAAAACTTACTTTTCATAAGATTTTCGTTCATTTATGACAATTTTCAGGAGTCTGGAGCTTGGCTGTGAAATTTCC</canonical>
            <polymorphic>AGTAGGCGGAAACTCTGAGTGCTTCTTTTCTGGAGCAGTGAGACGCGGCAGAAGAAAAGAGAGGGCAAGTGCACAAAAGTTGATGGTGAGAAGAAAGGAAAAACTGCTTGTGCTTTTGCTTTTTTTTGCAAAAAAAGAATATTATGAATACGTGTGTTTATGTGGTATATGAGAAGGGCAAAACATGGAAAACGTTTATAAAACAAAACTGAGTGTTCGGCCGGCTAAAAACAAAAGAAGAAATAAAATAAGATGATTTTCTTCTTCTCATAAGAAGAAAAAGAGCAAATTTCAAGGTGAGGGAGGTAAAAAGCAAAGTGATCCTCAGAAGAGATAGCACCTGTTTCTGACGAGAGACTCGGTTTTACACCGAGAAGTCAGCAGGGACATTATCGAATTTTTTCGCTCGGCTTTTCGCCTTCTTCCAGTATTTGACAATGATTTATGTGGCACCAGTTGTGAAATAGAAGAAGGAGATGAGGGGTAAAAGGTTCCTCATYTCATCAGCACTCTCTTAAGGGTCCATGAGGGGTACATTGGACTCTGGGTGCAGGATTGGATTGGAGAAAAAATGTATGTTTTAGTTTTGTGACAAGTGCAAATCACTTTGTACCTGGTTTGACAACCAGATTGGTCAGGTATTGATCAGAAAGATGTTAGAATTATATACTTGCACCTGGCGGGATCAGAATCAAACATTTTTGAATTGAAAATTCATACCTTACACTCTAATAGAAATACCTGACACTCTAATAAAATAATCTTCTTACTTTCAACTTTGAGCCAATTTATCTTGGTTTTTGCGACAGATATCAAAAAGCGATCAACTGACAAAATAATTTTCGTATCATAATCAGTATTTTGACAGTTGAGTACTTTTTGATATCTTTCACAGGAAATGAGGTACAGTACCGGTAAATAAGATAAAACTTACTTTTCATAAGATTTTCGTTCATTTATGACAATTTTCAGGAGTCTGGAGCTTGGCTGTGAAATTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTCCAGTATTTGACAATGAT</pcr_primer_p1>
		<pcr_primer_p2>CATCTTTCTGATCAATACCTGAC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>TTCTTCCAGTATTTGACAATGATTTATGTGGCACCAGTTGTGAAATAGAAGAAGGAGATGAGGGGTAAAAGGTTCCTCATTTCATCAGCACTCTCTTAAGGGTCCATGAGGGGTACATTGGACTCTGGGTGCAGGATTGGATTGGAGAAAAAATGTATGTTTTAGTTTTGTGACAAGTGCAAATCACTTTGTACCTGGTTTGACAACCAGATTGGTCAGGTATTGATCAGAAAGATG</canonical_amplicon>
		<polymorphic_amplicon>TTCTTCCAGTATTTGACAATGATTTATGTGGCACCAGTTGTGAAATAGAAGAAGGAGATGAGGGGTAAAAGGTTCCTCATYTCATCAGCACTCTCTTAAGGGTCCATGAGGGGTACATTGGACTCTGGGTGCAGGATTGGATTGGAGAAAAAATGTATGTTTTAGTTTTGTGACAAGTGCAAATCACTTTGTACCTGGTTTGACAACCAGATTGGTCAGGTATTGATCAGAAAGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20356</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>839204</contig_pos>
        <strand></strand>
        <context>cagaaattga[A/G]atGATTGAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGAATAATTTTGCAGTTAACAAGATCCTGATATCTCGCACAGAAATTGA</left_flank>
        <right_flank>ATGATTGAGCTCAAAATTGACAGATTGTATGAGCTTCTATGAAGGAAATA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTCGAAAATAGGGAATCTGGTTATTCTATAATAGAAACAACAATTTTCAGCAAAAATAAATGAAAATTATAAAAAGTTCTGCAATTGTTGTTATTTTAACCAATCAATTTTGGAACTTATTTTTAAAATTTCAATGTCGAATTCTAGGAAAAATGTGTTTTTCTGACTTTTTTCGATTTTTCAAGTTTTTTAAAAAGGGTTTTCAAGATGGGATCTTTTTTGGATTTTCAGTTTTTCTTAGAAATGAATTAATAGAGAAAATTGAAAGAATTTAAAAGCTTGACAAAATGAAAGGTTCGAAATGCCGAAACTTTTTCCGTTTCTCGGCAATTACGGTATTTTCTCTGAAAAAAGCTCCTCCAAGTCGTCAACATTGAGCTCAATTATCTCGATTTATGTGAGAAATAGAAGAAATATGTTGATTAATAAAATGTTGTTGATAAATTAATGAATAATTTTGCAGTTAACAAGATCCTGATATCTCGCACAGAAATTGAAATGATTGAGCTCAAAATTGACAGATTGTATGAGCTTCTATGAAGGAAATACGAATAGTTGGCTTATCAGTAATAAAAAAATAAATTTCTAAGTCTAGCTTTAATTGTATATCGTTCTTATCATCTACTCAGCTCTAATTATCTATTGTAAAAGCTACTGAAATTCTCTTCTTCTTTTCTACACCCATAAAAGTTCACTAAATTCTCTTATTCTGACTAATCGCATACTGACTAATCATGAATCATAACCAAAGTCTCTCCTGTCATGGGTAAACTTGATTCTCCCTCCCTTTCTAACTCATTCATCACGTTTTGGTTCCCGTTCTGAATGTGAGGCCGTCATCTCCTCCCCTCTCATCCCCACCCATCATGAAGCATTAGTTTTGAGATAGAGGACATTTTCTCTTGATGAAGAAACGAACAGAAATGAGTGTTGGAAGAAAAAAAGAAAAGGATATTTGGAGGGAATGGATAAAGGTTTATGTTTCGTTTTCTGCAGTG</canonical>
            <polymorphic>TGGTCGAAAATAGGGAATCTGGTTATTCTATAATAGAAACAACAATTTTCAGCAAAAATAAATGAAAATTATAAAAAGTTCTGCAATTGTTGTTATTTTAACCAATCAATTTTGGAACTTATTTTTAAAATTTCAATGTCGAATTCTAGGAAAAATGTGTTTTTCTGACTTTTTTCGATTTTTCAAGTTTTTTAAAAAGGGTTTTCAAGATGGGATCTTTTTTGGATTTTCAGTTTTTCTTAGAAATGAATTAATAGAGAAAATTGAAAGAATTTAAAAGCTTGACAAAATGAAAGGTTCGAAATGCCGAAACTTTTTCCGTTTCTCGGCAATTACGGTATTTTCTCTGAAAAAAGCTCCTCCAAGTCGTCAACATTGAGCTCAATTATCTCGATTTATGTGAGAAATAGAAGAAATATGTTGATTAATAAAATGTTGTTGATAAATTAATGAATAATTTTGCAGTTAACAAGATCCTGATATCTCGCACAGAAATTGARATGATTGAGCTCAAAATTGACAGATTGTATGAGCTTCTATGAAGGAAATACGAATAGTTGGCTTATCAGTAATAAAAAAATAAATTTCTAAGTCTAGCTTTAATTGTATATCGTTCTTATCATCTACTCAGCTCTAATTATCTATTGTAAAAGCTACTGAAATTCTCTTCTTCTTTTCTACACCCATAAAAGTTCACTAAATTCTCTTATTCTGACTAATCGCATACTGACTAATCATGAATCATAACCAAAGTCTCTCCTGTCATGGGTAAACTTGATTCTCCCTCCCTTTCTAACTCATTCATCACGTTTTGGTTCCCGTTCTGAATGTGAGGCCGTCATCTCCTCCCCTCTCATCCCCACCCATCATGAAGCATTAGTTTTGAGATAGAGGACATTTTCTCTTGATGAAGAAACGAACAGAAATGAGTGTTGGAAGAAAAAAAGAAAAGGATATTTGGAGGGAATGGATAAAGGTTTATGTTTCGTTTTCTGCAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAATTACGGTATTTTCTCTGA</pcr_primer_p1>
		<pcr_primer_p2>TTACTGATAAGCCAACTATTCGTA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GCAATTACGGTATTTTCTCTGAAAAAAGCTCCTCCAAGTCGTCAACATTGAGCTCAATTATCTCGATTTATGTGAGAAATAGAAGAAATATGTTGATTAATAAAATGTTGTTGATAAATTAATGAATAATTTTGCAGTTAACAAGATCCTGATATCTCGCACAGAAATTGAAATGATTGAGCTCAAAATTGACAGATTGTATGAGCTTCTATGAAGGAAATACGAATAGTTGGCTTATCAGTAA</canonical_amplicon>
		<polymorphic_amplicon>GCAATTACGGTATTTTCTCTGAAAAAAGCTCCTCCAAGTCGTCAACATTGAGCTCAATTATCTCGATTTATGTGAGAAATAGAAGAAATATGTTGATTAATAAAATGTTGTTGATAAATTAATGAATAATTTTGCAGTTAACAAGATCCTGATATCTCGCACAGAAATTGARATGATTGAGCTCAAAATTGACAGATTGTATGAGCTTCTATGAAGGAAATACGAATAGTTGGCTTATCAGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20357</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>839331</contig_pos>
        <strand>+</strand>
        <context>TTATCATCTA[A/C]TCAGCTCTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAATAAATTTCTAAGTCTAGCTTTAATTGTATATCGTTCTTATCATCTA</left_flank>
        <right_flank>TCAGCTCTAATTATCTATTGTAAAAGCTACTGAAATTCTCTTCTTCTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTCAATGTCGAATTCTAGGAAAAATGTGTTTTTCTGACTTTTTTCGATTTTTCAAGTTTTTTAAAAAGGGTTTTCAAGATGGGATCTTTTTTGGATTTTCAGTTTTTCTTAGAAATGAATTAATAGAGAAAATTGAAAGAATTTAAAAGCTTGACAAAATGAAAGGTTCGAAATGCCGAAACTTTTTCCGTTTCTCGGCAATTACGGTATTTTCTCTGAAAAAAGCTCCTCCAAGTCGTCAACATTGAGCTCAATTATCTCGATTTATGTGAGAAATAGAAGAAATATGTTGATTAATAAAATGTTGTTGATAAATTAATGAATAATTTTGCAGTTAACAAGATCCTGATATCTCGCACAGAAATTGAAATGATTGAGCTCAAAATTGACAGATTGTATGAGCTTCTATGAAGGAAATACGAATAGTTGGCTTATCAGTAATAAAAAAATAAATTTCTAAGTCTAGCTTTAATTGTATATCGTTCTTATCATCTACTCAGCTCTAATTATCTATTGTAAAAGCTACTGAAATTCTCTTCTTCTTTTCTACACCCATAAAAGTTCACTAAATTCTCTTATTCTGACTAATCGCATACTGACTAATCATGAATCATAACCAAAGTCTCTCCTGTCATGGGTAAACTTGATTCTCCCTCCCTTTCTAACTCATTCATCACGTTTTGGTTCCCGTTCTGAATGTGAGGCCGTCATCTCCTCCCCTCTCATCCCCACCCATCATGAAGCATTAGTTTTGAGATAGAGGACATTTTCTCTTGATGAAGAAACGAACAGAAATGAGTGTTGGAAGAAAAAAAGAAAAGGATATTTGGAGGGAATGGATAAAGGTTTATGTTTCGTTTTCTGCAGTGGTCATCATCTCAACCACTGACAAGAACAGAAAAAATGAAAAACATACAAACCTCTCAGAGAAACGCACTGTTTGAAAATAACACTAAAACAATAAGTTTGGAGAGAGAGAGAGAGAGAGAGGAGCTG</canonical>
            <polymorphic>AAATTTCAATGTCGAATTCTAGGAAAAATGTGTTTTTCTGACTTTTTTCGATTTTTCAAGTTTTTTAAAAAGGGTTTTCAAGATGGGATCTTTTTTGGATTTTCAGTTTTTCTTAGAAATGAATTAATAGAGAAAATTGAAAGAATTTAAAAGCTTGACAAAATGAAAGGTTCGAAATGCCGAAACTTTTTCCGTTTCTCGGCAATTACGGTATTTTCTCTGAAAAAAGCTCCTCCAAGTCGTCAACATTGAGCTCAATTATCTCGATTTATGTGAGAAATAGAAGAAATATGTTGATTAATAAAATGTTGTTGATAAATTAATGAATAATTTTGCAGTTAACAAGATCCTGATATCTCGCACAGAAATTGAAATGATTGAGCTCAAAATTGACAGATTGTATGAGCTTCTATGAAGGAAATACGAATAGTTGGCTTATCAGTAATAAAAAAATAAATTTCTAAGTCTAGCTTTAATTGTATATCGTTCTTATCATCTAMTCAGCTCTAATTATCTATTGTAAAAGCTACTGAAATTCTCTTCTTCTTTTCTACACCCATAAAAGTTCACTAAATTCTCTTATTCTGACTAATCGCATACTGACTAATCATGAATCATAACCAAAGTCTCTCCTGTCATGGGTAAACTTGATTCTCCCTCCCTTTCTAACTCATTCATCACGTTTTGGTTCCCGTTCTGAATGTGAGGCCGTCATCTCCTCCCCTCTCATCCCCACCCATCATGAAGCATTAGTTTTGAGATAGAGGACATTTTCTCTTGATGAAGAAACGAACAGAAATGAGTGTTGGAAGAAAAAAAGAAAAGGATATTTGGAGGGAATGGATAAAGGTTTATGTTTCGTTTTCTGCAGTGGTCATCATCTCAACCACTGACAAGAACAGAAAAAATGAAAAACATACAAACCTCTCAGAGAAACGCACTGTTTGAAAATAACACTAAAACAATAAGTTTGGAGAGAGAGAGAGAGAGAGAGGAGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>427 349 112 73 39</canonical_bands>
                <polymorphic_bands>466 349 112 73</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGACAGATTGTATGAGCTTCT</pcr_primer_p1>
		<pcr_primer_p2>ACAGGAGAGACTTTGGTTATGAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTGACAGATTGTATGAGCTTCTATGAAGGAAATACGAATAGTTGGCTTATCAGTAATAAAAAAATAAATTTCTAAGTCTAGCTTTAATTGTATATCGTTCTTATCATCTACTCAGCTCTAATTATCTATTGTAAAAGCTACTGAAATTCTCTTCTTCTTTTCTACACCCATAAAAGTTCACTAAATTCTCTTATTCTGACTAATCGCATACTGACTAATCATGAATCATAACCAAAGTCTCTCCTGT</canonical_amplicon>
		<polymorphic_amplicon>ATTGACAGATTGTATGAGCTTCTATGAAGGAAATACGAATAGTTGGCTTATCAGTAATAAAAAAATAAATTTCTAAGTCTAGCTTTAATTGTATATCGTTCTTATCATCTAMTCAGCTCTAATTATCTATTGTAAAAGCTACTGAAATTCTCTTCTTCTTTTCTACACCCATAAAAGTTCACTAAATTCTCTTATTCTGACTAATCGCATACTGACTAATCATGAATCATAACCAAAGTCTCTCCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20358</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>841374</contig_pos>
        <strand>+</strand>
        <context>AAGCAATCGT[A/G]TCAAATAGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTTCTAGCAAAGCTGTGTCGAAAAAATAGTAAGAAAGAAAGCAATCGT</left_flank>
        <right_flank>TCAAATAGTGTCTCAATTACACAAGAAAGCGAGCCGAAGAAAAAAAAGTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAGGTGAATTGATCTGAAAATTCGAAAATTGTTCTTATTCACTCAACAATCATTTCGAAACCCCAAAAAAACCAATTATGAGTGAATTTATTACAAATTATTGGCTGAACGGTAATCATAAGAATTTCAAAAAAAGTAAAATTGTGAAGAATTTCTCAGAAATGTCATCTGAAGGTCTTAGAGCAAATCGACTATTTTATTCACGAAATTTGGATTTCAAGAACTTTTAGAGTCAAAAATTTCGAAAATTCCAAAAATTCCGAATCAACATGACGTTATCATGTTTTCAACAAAAAATATTTTGACGCTGACAAACAAAACATAACTGTATCAACGGCGATTTTGTATTATTTCCATAATGCGATTGAAAATTTTGTAAATGGTTTATCGGATTACCAACTGTCAACATTAATACTGAACTGTTCAAAATGGGTACTGTAACCGGCACTTTTCTAGCAAAGCTGTGTCGAAAAAATAGTAAGAAAGAAAGCAATCGTGTCAAATAGTGTCTCAATTACACAAGAAAGCGAGCCGAAGAAAAAAAAGTGAGAAAAAGAAAAAGAACTAACATAGAAGTGGGTTAAAATATAGGCAAACATGAAAATAATCGACTCTGAACAGACGAGCCCAACCTGGTGGGCCACGGAAACTAGAGGGATTCCTTGTTTGGGAATGTTGAGGAAAAAGAGGTGACACGAGACACAACAGATGCCAGGAGACGTAGGAGGTGAGAGGAACGATGAGAGTACGCGACTGTTTGGGAGGGCCAACCGTTTGTAGCCGATCTGCTGTTAGGAAAGAGGAGGTGACCGCATCAACAGAAAGAGAAGGCCCCACCACGAATAGTGCGCAGAAGAGGAAATTGCTCTGCTCGGGCCGGGAGGGGGGCTATGGAACGAACACAGCGGAAGGTTTTTGTGTATATGTGTGTGTGTGCTTGTTCAAATAGGTGTGTGCAGCAACCCGCAACGGCGGCTGACCGGCCTCCGATCGCGCAC</canonical>
            <polymorphic>AATAGGTGAATTGATCTGAAAATTCGAAAATTGTTCTTATTCACTCAACAATCATTTCGAAACCCCAAAAAAACCAATTATGAGTGAATTTATTACAAATTATTGGCTGAACGGTAATCATAAGAATTTCAAAAAAAGTAAAATTGTGAAGAATTTCTCAGAAATGTCATCTGAAGGTCTTAGAGCAAATCGACTATTTTATTCACGAAATTTGGATTTCAAGAACTTTTAGAGTCAAAAATTTCGAAAATTCCAAAAATTCCGAATCAACATGACGTTATCATGTTTTCAACAAAAAATATTTTGACGCTGACAAACAAAACATAACTGTATCAACGGCGATTTTGTATTATTTCCATAATGCGATTGAAAATTTTGTAAATGGTTTATCGGATTACCAACTGTCAACATTAATACTGAACTGTTCAAAATGGGTACTGTAACCGGCACTTTTCTAGCAAAGCTGTGTCGAAAAAATAGTAAGAAAGAAAGCAATCGTRTCAAATAGTGTCTCAATTACACAAGAAAGCGAGCCGAAGAAAAAAAAGTGAGAAAAAGAAAAAGAACTAACATAGAAGTGGGTTAAAATATAGGCAAACATGAAAATAATCGACTCTGAACAGACGAGCCCAACCTGGTGGGCCACGGAAACTAGAGGGATTCCTTGTTTGGGAATGTTGAGGAAAAAGAGGTGACACGAGACACAACAGATGCCAGGAGACGTAGGAGGTGAGAGGAACGATGAGAGTACGCGACTGTTTGGGAGGGCCAACCGTTTGTAGCCGATCTGCTGTTAGGAAAGAGGAGGTGACCGCATCAACAGAAAGAGAAGGCCCCACCACGAATAGTGCGCAGAAGAGGAAATTGCTCTGCTCGGGCCGGGAGGGGGGCTATGGAACGAACACAGCGGAAGGTTTTTGTGTATATGTGTGTGTGTGCTTGTTCAAATAGGTGTGTGCAGCAACCCGCAACGGCGGCTGACCGGCCTCCGATCGCGCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>244 78 62 60 57 54 49 43 41 35 32 30 29 28 28 19 18 16 11 10 9 8 8 7 5 3 3 2 2 2 2 2 2 1</canonical_bands>
                <polymorphic_bands>244 78 62 60 57 54 49 43 42 41 35 30 29 28 28 19 18 16 11 9 8 8 7 5 3 3 2 2 2 2 2 2 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTAAATGGTTTATCGGATTAC</pcr_primer_p1>
		<pcr_primer_p2>TCTGTTCAGAGTCGATTATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGTAAATGGTTTATCGGATTACCAACTGTCAACATTAATACTGAACTGTTCAAAATGGGTACTGTAACCGGCACTTTTCTAGCAAAGCTGTGTCGAAAAAATAGTAAGAAAGAAAGCAATCGTGTCAAATAGTGTCTCAATTACACAAGAAAGCGAGCCGAAGAAAAAAAAGTGAGAAAAAGAAAAAGAACTAACATAGAAGTGGGTTAAAATATAGGCAAACATGAAAATAATCGACTCTGAACAGA</canonical_amplicon>
		<polymorphic_amplicon>TTGTAAATGGTTTATCGGATTACCAACTGTCAACATTAATACTGAACTGTTCAAAATGGGTACTGTAACCGGCACTTTTCTAGCAAAGCTGTGTCGAAAAAATAGTAAGAAAGAAAGCAATCGTRTCAAATAGTGTCTCAATTACACAAGAAAGCGAGCCGAAGAAAAAAAAGTGAGAAAAAGAAAAAGAACTAACATAGAAGTGGGTTAAAATATAGGCAAACATGAAAATAATCGACTCTGAACAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20359</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>841307</contig_pos>
        <strand>+</strand>
        <context>TGTTCAAAAT[A/G]GGTACTGTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGTTTATCGGATTACCAACTGTCAACATTAATACTGAACTGTTCAAAAT</left_flank>
        <right_flank>GGTACTGTAACCGGCACTTTTCTAGCAAAGCTGTGTCGAAAAAATAGTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTACGTTGTTGTGATTCTTATTGACTGGTACTGTACTTTACCTTAGTGGAATACAAAATGTTTGAATAGGTGAATTGATCTGAAAATTCGAAAATTGTTCTTATTCACTCAACAATCATTTCGAAACCCCAAAAAAACCAATTATGAGTGAATTTATTACAAATTATTGGCTGAACGGTAATCATAAGAATTTCAAAAAAAGTAAAATTGTGAAGAATTTCTCAGAAATGTCATCTGAAGGTCTTAGAGCAAATCGACTATTTTATTCACGAAATTTGGATTTCAAGAACTTTTAGAGTCAAAAATTTCGAAAATTCCAAAAATTCCGAATCAACATGACGTTATCATGTTTTCAACAAAAAATATTTTGACGCTGACAAACAAAACATAACTGTATCAACGGCGATTTTGTATTATTTCCATAATGCGATTGAAAATTTTGTAAATGGTTTATCGGATTACCAACTGTCAACATTAATACTGAACTGTTCAAAATGGGTACTGTAACCGGCACTTTTCTAGCAAAGCTGTGTCGAAAAAATAGTAAGAAAGAAAGCAATCGTGTCAAATAGTGTCTCAATTACACAAGAAAGCGAGCCGAAGAAAAAAAAGTGAGAAAAAGAAAAAGAACTAACATAGAAGTGGGTTAAAATATAGGCAAACATGAAAATAATCGACTCTGAACAGACGAGCCCAACCTGGTGGGCCACGGAAACTAGAGGGATTCCTTGTTTGGGAATGTTGAGGAAAAAGAGGTGACACGAGACACAACAGATGCCAGGAGACGTAGGAGGTGAGAGGAACGATGAGAGTACGCGACTGTTTGGGAGGGCCAACCGTTTGTAGCCGATCTGCTGTTAGGAAAGAGGAGGTGACCGCATCAACAGAAAGAGAAGGCCCCACCACGAATAGTGCGCAGAAGAGGAAATTGCTCTGCTCGGGCCGGGAGGGGGGCTATGGAACGAACACAGCGGAAGGTTTTTGTGTATATGTGTGT</canonical>
            <polymorphic>AAAGTACGTTGTTGTGATTCTTATTGACTGGTACTGTACTTTACCTTAGTGGAATACAAAATGTTTGAATAGGTGAATTGATCTGAAAATTCGAAAATTGTTCTTATTCACTCAACAATCATTTCGAAACCCCAAAAAAACCAATTATGAGTGAATTTATTACAAATTATTGGCTGAACGGTAATCATAAGAATTTCAAAAAAAGTAAAATTGTGAAGAATTTCTCAGAAATGTCATCTGAAGGTCTTAGAGCAAATCGACTATTTTATTCACGAAATTTGGATTTCAAGAACTTTTAGAGTCAAAAATTTCGAAAATTCCAAAAATTCCGAATCAACATGACGTTATCATGTTTTCAACAAAAAATATTTTGACGCTGACAAACAAAACATAACTGTATCAACGGCGATTTTGTATTATTTCCATAATGCGATTGAAAATTTTGTAAATGGTTTATCGGATTACCAACTGTCAACATTAATACTGAACTGTTCAAAATRGGTACTGTAACCGGCACTTTTCTAGCAAAGCTGTGTCGAAAAAATAGTAAGAAAGAAAGCAATCGTGTCAAATAGTGTCTCAATTACACAAGAAAGCGAGCCGAAGAAAAAAAAGTGAGAAAAAGAAAAAGAACTAACATAGAAGTGGGTTAAAATATAGGCAAACATGAAAATAATCGACTCTGAACAGACGAGCCCAACCTGGTGGGCCACGGAAACTAGAGGGATTCCTTGTTTGGGAATGTTGAGGAAAAAGAGGTGACACGAGACACAACAGATGCCAGGAGACGTAGGAGGTGAGAGGAACGATGAGAGTACGCGACTGTTTGGGAGGGCCAACCGTTTGTAGCCGATCTGCTGTTAGGAAAGAGGAGGTGACCGCATCAACAGAAAGAGAAGGCCCCACCACGAATAGTGCGCAGAAGAGGAAATTGCTCTGCTCGGGCCGGGAGGGGGGCTATGGAACGAACACAGCGGAAGGTTTTTGTGTATATGTGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTAAATGGTTTATCGGATTAC</pcr_primer_p1>
		<pcr_primer_p2>TCTGTTCAGAGTCGATTATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGTAAATGGTTTATCGGATTACCAACTGTCAACATTAATACTGAACTGTTCAAAATGGGTACTGTAACCGGCACTTTTCTAGCAAAGCTGTGTCGAAAAAATAGTAAGAAAGAAAGCAATCGTGTCAAATAGTGTCTCAATTACACAAGAAAGCGAGCCGAAGAAAAAAAAGTGAGAAAAAGAAAAAGAACTAACATAGAAGTGGGTTAAAATATAGGCAAACATGAAAATAATCGACTCTGAACAGA</canonical_amplicon>
		<polymorphic_amplicon>TTGTAAATGGTTTATCGGATTACCAACTGTCAACATTAATACTGAACTGTTCAAAATRGGTACTGTAACCGGCACTTTTCTAGCAAAGCTGTGTCGAAAAAATAGTAAGAAAGAAAGCAATCGTGTCAAATAGTGTCTCAATTACACAAGAAAGCGAGCCGAAGAAAAAAAAGTGAGAAAAAGAAAAAGAACTAACATAGAAGTGGGTTAAAATATAGGCAAACATGAAAATAATCGACTCTGAACAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20360</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>841039</contig_pos>
        <strand>+</strand>
        <context>TTCTCARAAA[C/T]GTCATCTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATCATAAGAATTTCAAAAAAAGTAAAATTGTGAAGAATTTCTCAGAAA</left_flank>
        <right_flank>GTCATCTGAAGGTCTTAGAGCAAATCGACTATTTTATTCACGAAATTTGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGATCACTTTGAAAATCTTGGAGCGTGTAAATTAGCCCTAGATGGAAAACTTTGCATTTAAAGAATTTCTTCAAACTTCCTAATTTTTCAGCTATACGCCGATTTTCGGAAAACACTTTTTTCATATTTTTAGCACCAAAACGGGCGGGCCATAGTTCAGAATATAGGTCTGCTTTACGCTTTTCAATGTGTTCGAAACGATCAGAAACCTGACGGCCGAGCTCCAGATTTCTTAAAACTATCAAAATGGTGGAAAATTAACTAAAAAAAGTACGTTGTTGTGATTCTTATTGACTGGTACTGTACTTTACCTTAGTGGAATACAAAATGTTTGAATAGGTGAATTGATCTGAAAATTCGAAAATTGTTCTTATTCACTCAACAATCATTTCGAAACCCCAAAAAAACCAATTATGAGTGAATTTATTACAAATTATTGGCTGAACGGTAATCATAAGAATTTCAAAAAAAGTAAAATTGTGAAGAATTTCTCAGAAATGTCATCTGAAGGTCTTAGAGCAAATCGACTATTTTATTCACGAAATTTGGATTTCAAGAACTTTTAGAGTCAAAAATTTCGAAAATTCCAAAAATTCCGAATCAACATGACGTTATCATGTTTTCAACAAAAAATATTTTGACGCTGACAAACAAAACATAACTGTATCAACGGCGATTTTGTATTATTTCCATAATGCGATTGAAAATTTTGTAAATGGTTTATCGGATTACCAACTGTCAACATTAATACTGAACTGTTCAAAATGGGTACTGTAACCGGCACTTTTCTAGCAAAGCTGTGTCGAAAAAATAGTAAGAAAGAAAGCAATCGTGTCAAATAGTGTCTCAATTACACAAGAAAGCGAGCCGAAGAAAAAAAAGTGAGAAAAAGAAAAAGAACTAACATAGAAGTGGGTTAAAATATAGGCAAACATGAAAATAATCGACTCTGAACAGACGAGCCCAACCTGGTGGGCCACGGAAACTAGAGGGATTCCT</canonical>
            <polymorphic>CCGATCACTTTGAAAATCTTGGAGCGTGTAAATTAGCCCTAGATGGAAAACTTTGCATTTAAAGAATTTCTTCAAACTTCCTAATTTTTCAGCTATACGCCGATTTTCGGAAAACACTTTTTTCATATTTTTAGCACCAAAACGGGCGGGCCATAGTTCAGAATATAGGTCTGCTTTACGCTTTTCAATGTGTTCGAAACGATCAGAAACCTGACGGCCGAGCTCCAGATTTCTTAAAACTATCAAAATGGTGGAAAATTAACTAAAAAAAGTACGTTGTTGTGATTCTTATTGACTGGTACTGTACTTTACCTTAGTGGAATACAAAATGTTTGAATAGGTGAATTGATCTGAAAATTCGAAAATTGTTCTTATTCACTCAACAATCATTTCGAAACCCCAAAAAAACCAATTATGAGTGAATTTATTACAAATTATTGGCTGAACGGTAATCATAAGAATTTCAAAAAAAGTAAAATTGTGAAGAATTTCTCAGAAAYGTCATCTGAAGGTCTTAGAGCAAATCGACTATTTTATTCACGAAATTTGGATTTCAAGAACTTTTAGAGTCAAAAATTTCGAAAATTCCAAAAATTCCGAATCAACATGACGTTATCATGTTTTCAACAAAAAATATTTTGACGCTGACAAACAAAACATAACTGTATCAACGGCGATTTTGTATTATTTCCATAATGCGATTGAAAATTTTGTAAATGGTTTATCGGATTACCAACTGTCAACATTAATACTGAACTGTTCAAAATGGGTACTGTAACCGGCACTTTTCTAGCAAAGCTGTGTCGAAAAAATAGTAAGAAAGAAAGCAATCGTGTCAAATAGTGTCTCAATTACACAAGAAAGCGAGCCGAAGAAAAAAAAGTGAGAAAAAGAAAAAGAACTAACATAGAAGTGGGTTAAAATATAGGCAAACATGAAAATAATCGACTCTGAACAGACGAGCCCAACCTGGTGGGCCACGGAAACTAGAGGGATTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATGTTTGAATAGGTGAATTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTGACTCTAAAAGTTCTTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATGTTTGAATAGGTGAATTGATCTGAAAATTCGAAAATTGTTCTTATTCACTCAACAATCATTTCGAAACCCCAAAAAAACCAATTATGAGTGAATTTATTACAAATTATTGGCTGAACGGTAATCATAAGAATTTCAAAAAAAGTAAAATTGTGAAGAATTTCTCAGAAATGTCATCTGAAGGTCTTAGAGCAAATCGACTATTTTATTCACGAAATTTGGATTTCAAGAACTTTTAGAGTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAATGTTTGAATAGGTGAATTGATCTGAAAATTCGAAAATTGTTCTTATTCACTCAACAATCATTTCGAAACCCCAAAAAAACCAATTATGAGTGAATTTATTACAAATTATTGGCTGAACGGTAATCATAAGAATTTCAAAAAAAGTAAAATTGTGAAGAATTTCTCAGAAAYGTCATCTGAAGGTCTTAGAGCAAATCGACTATTTTATTCACGAAATTTGGATTTCAAGAACTTTTAGAGTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20361</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>841035</contig_pos>
        <strand>+</strand>
        <context>GAATTTCTCA[A/G]AAAYGTCATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGGTAATCATAAGAATTTCAAAAAAAGTAAAATTGTGAAGAATTTCTCA</left_flank>
        <right_flank>AAATGTCATCTGAAGGTCTTAGAGCAAATCGACTATTTTATTCACGAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTCCGATCACTTTGAAAATCTTGGAGCGTGTAAATTAGCCCTAGATGGAAAACTTTGCATTTAAAGAATTTCTTCAAACTTCCTAATTTTTCAGCTATACGCCGATTTTCGGAAAACACTTTTTTCATATTTTTAGCACCAAAACGGGCGGGCCATAGTTCAGAATATAGGTCTGCTTTACGCTTTTCAATGTGTTCGAAACGATCAGAAACCTGACGGCCGAGCTCCAGATTTCTTAAAACTATCAAAATGGTGGAAAATTAACTAAAAAAAGTACGTTGTTGTGATTCTTATTGACTGGTACTGTACTTTACCTTAGTGGAATACAAAATGTTTGAATAGGTGAATTGATCTGAAAATTCGAAAATTGTTCTTATTCACTCAACAATCATTTCGAAACCCCAAAAAAACCAATTATGAGTGAATTTATTACAAATTATTGGCTGAACGGTAATCATAAGAATTTCAAAAAAAGTAAAATTGTGAAGAATTTCTCAGAAATGTCATCTGAAGGTCTTAGAGCAAATCGACTATTTTATTCACGAAATTTGGATTTCAAGAACTTTTAGAGTCAAAAATTTCGAAAATTCCAAAAATTCCGAATCAACATGACGTTATCATGTTTTCAACAAAAAATATTTTGACGCTGACAAACAAAACATAACTGTATCAACGGCGATTTTGTATTATTTCCATAATGCGATTGAAAATTTTGTAAATGGTTTATCGGATTACCAACTGTCAACATTAATACTGAACTGTTCAAAATGGGTACTGTAACCGGCACTTTTCTAGCAAAGCTGTGTCGAAAAAATAGTAAGAAAGAAAGCAATCGTGTCAAATAGTGTCTCAATTACACAAGAAAGCGAGCCGAAGAAAAAAAAGTGAGAAAAAGAAAAAGAACTAACATAGAAGTGGGTTAAAATATAGGCAAACATGAAAATAATCGACTCTGAACAGACGAGCCCAACCTGGTGGGCCACGGAAACTAGAGGGAT</canonical>
            <polymorphic>GTTTCCGATCACTTTGAAAATCTTGGAGCGTGTAAATTAGCCCTAGATGGAAAACTTTGCATTTAAAGAATTTCTTCAAACTTCCTAATTTTTCAGCTATACGCCGATTTTCGGAAAACACTTTTTTCATATTTTTAGCACCAAAACGGGCGGGCCATAGTTCAGAATATAGGTCTGCTTTACGCTTTTCAATGTGTTCGAAACGATCAGAAACCTGACGGCCGAGCTCCAGATTTCTTAAAACTATCAAAATGGTGGAAAATTAACTAAAAAAAGTACGTTGTTGTGATTCTTATTGACTGGTACTGTACTTTACCTTAGTGGAATACAAAATGTTTGAATAGGTGAATTGATCTGAAAATTCGAAAATTGTTCTTATTCACTCAACAATCATTTCGAAACCCCAAAAAAACCAATTATGAGTGAATTTATTACAAATTATTGGCTGAACGGTAATCATAAGAATTTCAAAAAAAGTAAAATTGTGAAGAATTTCTCARAAATGTCATCTGAAGGTCTTAGAGCAAATCGACTATTTTATTCACGAAATTTGGATTTCAAGAACTTTTAGAGTCAAAAATTTCGAAAATTCCAAAAATTCCGAATCAACATGACGTTATCATGTTTTCAACAAAAAATATTTTGACGCTGACAAACAAAACATAACTGTATCAACGGCGATTTTGTATTATTTCCATAATGCGATTGAAAATTTTGTAAATGGTTTATCGGATTACCAACTGTCAACATTAATACTGAACTGTTCAAAATGGGTACTGTAACCGGCACTTTTCTAGCAAAGCTGTGTCGAAAAAATAGTAAGAAAGAAAGCAATCGTGTCAAATAGTGTCTCAATTACACAAGAAAGCGAGCCGAAGAAAAAAAAGTGAGAAAAAGAAAAAGAACTAACATAGAAGTGGGTTAAAATATAGGCAAACATGAAAATAATCGACTCTGAACAGACGAGCCCAACCTGGTGGGCCACGGAAACTAGAGGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>482 317 179 22</canonical_bands>
                <polymorphic_bands>482 317 201</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>225 147 143 129 107 91 51 45 44 12 6</canonical_bands>
                <polymorphic_bands>225 155 147 129 107 91 51 45 44 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATGTTTGAATAGGTGAATTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTGACTCTAAAAGTTCTTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATGTTTGAATAGGTGAATTGATCTGAAAATTCGAAAATTGTTCTTATTCACTCAACAATCATTTCGAAACCCCAAAAAAACCAATTATGAGTGAATTTATTACAAATTATTGGCTGAACGGTAATCATAAGAATTTCAAAAAAAGTAAAATTGTGAAGAATTTCTCAGAAATGTCATCTGAAGGTCTTAGAGCAAATCGACTATTTTATTCACGAAATTTGGATTTCAAGAACTTTTAGAGTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAATGTTTGAATAGGTGAATTGATCTGAAAATTCGAAAATTGTTCTTATTCACTCAACAATCATTTCGAAACCCCAAAAAAACCAATTATGAGTGAATTTATTACAAATTATTGGCTGAACGGTAATCATAAGAATTTCAAAAAAAGTAAAATTGTGAAGAATTTCTCARAAATGTCATCTGAAGGTCTTAGAGCAAATCGACTATTTTATTCACGAAATTTGGATTTCAAGAACTTTTAGAGTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20362</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>840947</contig_pos>
        <strand></strand>
        <context>CCCCAAAAAA[A/T]CCWATTATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCGAAAATTGTTCTTATTCACTCAACAATCATTTCGAAACCCCAAAAAA</left_flank>
        <right_flank>CCAATTATGAGTGAATTTATTACAAATTATTGGCTGAACGGTAATCATAA</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAGTCTATAAGATATACAAAAACGTAGTTTTCAGTTAAATTTTGGTCATTTCGACTGTTTTCAAAAGTCTGGAGCTTGGCTGAACAGTTTCCGATCACTTTGAAAATCTTGGAGCGTGTAAATTAGCCCTAGATGGAAAACTTTGCATTTAAAGAATTTCTTCAAACTTCCTAATTTTTCAGCTATACGCCGATTTTCGGAAAACACTTTTTTCATATTTTTAGCACCAAAACGGGCGGGCCATAGTTCAGAATATAGGTCTGCTTTACGCTTTTCAATGTGTTCGAAACGATCAGAAACCTGACGGCCGAGCTCCAGATTTCTTAAAACTATCAAAATGGTGGAAAATTAACTAAAAAAAGTACGTTGTTGTGATTCTTATTGACTGGTACTGTACTTTACCTTAGTGGAATACAAAATGTTTGAATAGGTGAATTGATCTGAAAATTCGAAAATTGTTCTTATTCACTCAACAATCATTTCGAAACCCCAAAAAAACCAATTATGAGTGAATTTATTACAAATTATTGGCTGAACGGTAATCATAAGAATTTCAAAAAAAGTAAAATTGTGAAGAATTTCTCAGAAATGTCATCTGAAGGTCTTAGAGCAAATCGACTATTTTATTCACGAAATTTGGATTTCAAGAACTTTTAGAGTCAAAAATTTCGAAAATTCCAAAAATTCCGAATCAACATGACGTTATCATGTTTTCAACAAAAAATATTTTGACGCTGACAAACAAAACATAACTGTATCAACGGCGATTTTGTATTATTTCCATAATGCGATTGAAAATTTTGTAAATGGTTTATCGGATTACCAACTGTCAACATTAATACTGAACTGTTCAAAATGGGTACTGTAACCGGCACTTTTCTAGCAAAGCTGTGTCGAAAAAATAGTAAGAAAGAAAGCAATCGTGTCAAATAGTGTCTCAATTACACAAGAAAGCGAGCCGAAGAAAAAAAAGTGAGAAAAAGAAAAAGAACTAACAT</canonical>
            <polymorphic>ACCAGTCTATAAGATATACAAAAACGTAGTTTTCAGTTAAATTTTGGTCATTTCGACTGTTTTCAAAAGTCTGGAGCTTGGCTGAACAGTTTCCGATCACTTTGAAAATCTTGGAGCGTGTAAATTAGCCCTAGATGGAAAACTTTGCATTTAAAGAATTTCTTCAAACTTCCTAATTTTTCAGCTATACGCCGATTTTCGGAAAACACTTTTTTCATATTTTTAGCACCAAAACGGGCGGGCCATAGTTCAGAATATAGGTCTGCTTTACGCTTTTCAATGTGTTCGAAACGATCAGAAACCTGACGGCCGAGCTCCAGATTTCTTAAAACTATCAAAATGGTGGAAAATTAACTAAAAAAAGTACGTTGTTGTGATTCTTATTGACTGGTACTGTACTTTACCTTAGTGGAATACAAAATGTTTGAATAGGTGAATTGATCTGAAAATTCGAAAATTGTTCTTATTCACTCAACAATCATTTCGAAACCCCAAAAAAWCCAATTATGAGTGAATTTATTACAAATTATTGGCTGAACGGTAATCATAAGAATTTCAAAAAAAGTAAAATTGTGAAGAATTTCTCAGAAATGTCATCTGAAGGTCTTAGAGCAAATCGACTATTTTATTCACGAAATTTGGATTTCAAGAACTTTTAGAGTCAAAAATTTCGAAAATTCCAAAAATTCCGAATCAACATGACGTTATCATGTTTTCAACAAAAAATATTTTGACGCTGACAAACAAAACATAACTGTATCAACGGCGATTTTGTATTATTTCCATAATGCGATTGAAAATTTTGTAAATGGTTTATCGGATTACCAACTGTCAACATTAATACTGAACTGTTCAAAATGGGTACTGTAACCGGCACTTTTCTAGCAAAGCTGTGTCGAAAAAATAGTAAGAAAGAAAGCAATCGTGTCAAATAGTGTCTCAATTACACAAGAAAGCGAGCCGAAGAAAAAAAAGTGAGAAAAAGAAAAAGAACTAACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATGTTTGAATAGGTGAATTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTGACTCTAAAAGTTCTTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATGTTTGAATAGGTGAATTGATCTGAAAATTCGAAAATTGTTCTTATTCACTCAACAATCATTTCGAAACCCCAAAAAAACCAATTATGAGTGAATTTATTACAAATTATTGGCTGAACGGTAATCATAAGAATTTCAAAAAAAGTAAAATTGTGAAGAATTTCTCAGAAATGTCATCTGAAGGTCTTAGAGCAAATCGACTATTTTATTCACGAAATTTGGATTTCAAGAACTTTTAGAGTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAATGTTTGAATAGGTGAATTGATCTGAAAATTCGAAAATTGTTCTTATTCACTCAACAATCATTTCGAAACCCCAAAAAAWCCAATTATGAGTGAATTTATTACAAATTATTGGCTGAACGGTAATCATAAGAATTTCAAAAAAAGTAAAATTGTGAAGAATTTCTCAGAAATGTCATCTGAAGGTCTTAGAGCAAATCGACTATTTTATTCACGAAATTTGGATTTCAAGAACTTTTAGAGTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20371</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>858516</contig_pos>
        <strand>+</strand>
        <context>CAACTGCAGT[A/G]AAAAATGAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTACGAAATTATTGAATTTCTATTAATAATATAACAGCAACTGCAGT</left_flank>
        <right_flank>AAAAATGAACTGTGAACAAAAGATTTTAGATCTGATTTGAATACTATTCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCAAAGTTTATTGCATTTTCACAGTAAAAACGAGTTATATTATTACGGGAACGCAGTATTACATGAACGCTCATTATTCAAATATAATTATAGTTTACTTTGATAAATTTTAAAGCATAATAAAAACTGTATTGCTGTATAACCTGTTAGAAAAGCTTTTCTAATAAAGGGTTTCCCGTATAAGACCCTTCCGGGGTACTTTGAAACAATAGAATCCTCTGTCCTTACAATTTTCGTTTTTCTCAAGGATTCGAAATTTAACTGTCAGTCGAATTGGATAACTGCCATTTCGAGGAACACCGTTATGATTTTCATTTGTATGACTTTTTACTCACGATAATGGCTGTTCAATTTCAGAAATTGATCAAAAATATCTGAAGAACATTTCGACTATCTTCTCAAAACTTTTACAAACACCGAATACGTTTTTGTTATACTACTGCATAAATTTTACGAAATTATTGAATTTCTATTAATAATATAACAGCAACTGCAGTAAAAAATGAACTGTGAACAAAAGATTTTAGATCTGATTTGAATACTATTCGTTATGATTTTAGCCTTAATTAGAACTTGAAACATCTGAAACTACAGTAAAGTACTCACCAAGAATATTTTGATAGACCACGAAGATTGAAAATTATGTTTGAAATTAGTAAAGAAGTTTAGAATACTCTCTGCTAGTAACCTTGAAAAGAAAAACAGTAAATGTTGTTACCGTAACACTACAAGGATGACCCTCCCCTTTAATTTTAGTTCTGGGTCAATTAACTTTGGATTTATTAAATTTTATAATTATCATAAATATTTCGTACGTTGAAATCTATTTGATAATCTCTACAGAAAATGAGATTTATTGGCTCAAAGTTGACGAACTGGGTGTCCGTACATTGAAAGAAAATAGTATTTTGAATGAACAGCGTGTGATAATAAAGATCATCTGTCGTTTTAAAACCTGACAAATTGCAAAATATGGTCTGCCACGGACAATGGACATG</canonical>
            <polymorphic>AATCAAAGTTTATTGCATTTTCACAGTAAAAACGAGTTATATTATTACGGGAACGCAGTATTACATGAACGCTCATTATTCAAATATAATTATAGTTTACTTTGATAAATTTTAAAGCATAATAAAAACTGTATTGCTGTATAACCTGTTAGAAAAGCTTTTCTAATAAAGGGTTTCCCGTATAAGACCCTTCCGGGGTACTTTGAAACAATAGAATCCTCTGTCCTTACAATTTTCGTTTTTCTCAAGGATTCGAAATTTAACTGTCAGTCGAATTGGATAACTGCCATTTCGAGGAACACCGTTATGATTTTCATTTGTATGACTTTTTACTCACGATAATGGCTGTTCAATTTCAGAAATTGATCAAAAATATCTGAAGAACATTTCGACTATCTTCTCAAAACTTTTACAAACACCGAATACGTTTTTGTTATACTACTGCATAAATTTTACGAAATTATTGAATTTCTATTAATAATATAACAGCAACTGCAGTRAAAAATGAACTGTGAACAAAAGATTTTAGATCTGATTTGAATACTATTCGTTATGATTTTAGCCTTAATTAGAACTTGAAACATCTGAAACTACAGTAAAGTACTCACCAAGAATATTTTGATAGACCACGAAGATTGAAAATTATGTTTGAAATTAGTAAAGAAGTTTAGAATACTCTCTGCTAGTAACCTTGAAAAGAAAAACAGTAAATGTTGTTACCGTAACACTACAAGGATGACCCTCCCCTTTAATTTTAGTTCTGGGTCAATTAACTTTGGATTTATTAAATTTTATAATTATCATAAATATTTCGTACGTTGAAATCTATTTGATAATCTCTACAGAAAATGAGATTTATTGGCTCAAAGTTGACGAACTGGGTGTCCGTACATTGAAAGAAAATAGTATTTTGAATGAACAGCGTGTGATAATAAAGATCATCTGTCGTTTTAAAACCTGACAAATTGCAAAATATGGTCTGCCACGGACAATGGACATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTCAAAACTTTTACAAACACC</pcr_primer_p1>
		<pcr_primer_p2>TAATTTTCAATCTTCGTGGTCTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTCTCAAAACTTTTACAAACACCGAATACGTTTTTGTTATACTACTGCATAAATTTTACGAAATTATTGAATTTCTATTAATAATATAACAGCAACTGCAGTAAAAAATGAACTGTGAACAAAAGATTTTAGATCTGATTTGAATACTATTCGTTATGATTTTAGCCTTAATTAGAACTTGAAACATCTGAAACTACAGTAAAGTACTCACCAAGAATATTTTGATAGACCACGAAGATTGAAAATTA</canonical_amplicon>
		<polymorphic_amplicon>TTCTCAAAACTTTTACAAACACCGAATACGTTTTTGTTATACTACTGCATAAATTTTACGAAATTATTGAATTTCTATTAATAATATAACAGCAACTGCAGTRAAAAATGAACTGTGAACAAAAGATTTTAGATCTGATTTGAATACTATTCGTTATGATTTTAGCCTTAATTAGAACTTGAAACATCTGAAACTACAGTAAAGTACTCACCAAGAATATTTTGATAGACCACGAAGATTGAAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20372</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>858581</contig_pos>
        <strand>+</strand>
        <context>GATTTTAGCC[C/T]TAATTAGAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACAAAAGATTTTAGATCTGATTTGAATACTATTCGTTATGATTTTAGCC</left_flank>
        <right_flank>TAATTAGAACTTGAAACATCTGAAACTACAGTAAAGTACTCACCAAGAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAACGCTCATTATTCAAATATAATTATAGTTTACTTTGATAAATTTTAAAGCATAATAAAAACTGTATTGCTGTATAACCTGTTAGAAAAGCTTTTCTAATAAAGGGTTTCCCGTATAAGACCCTTCCGGGGTACTTTGAAACAATAGAATCCTCTGTCCTTACAATTTTCGTTTTTCTCAAGGATTCGAAATTTAACTGTCAGTCGAATTGGATAACTGCCATTTCGAGGAACACCGTTATGATTTTCATTTGTATGACTTTTTACTCACGATAATGGCTGTTCAATTTCAGAAATTGATCAAAAATATCTGAAGAACATTTCGACTATCTTCTCAAAACTTTTACAAACACCGAATACGTTTTTGTTATACTACTGCATAAATTTTACGAAATTATTGAATTTCTATTAATAATATAACAGCAACTGCAGTAAAAAATGAACTGTGAACAAAAGATTTTAGATCTGATTTGAATACTATTCGTTATGATTTTAGCCTTAATTAGAACTTGAAACATCTGAAACTACAGTAAAGTACTCACCAAGAATATTTTGATAGACCACGAAGATTGAAAATTATGTTTGAAATTAGTAAAGAAGTTTAGAATACTCTCTGCTAGTAACCTTGAAAAGAAAAACAGTAAATGTTGTTACCGTAACACTACAAGGATGACCCTCCCCTTTAATTTTAGTTCTGGGTCAATTAACTTTGGATTTATTAAATTTTATAATTATCATAAATATTTCGTACGTTGAAATCTATTTGATAATCTCTACAGAAAATGAGATTTATTGGCTCAAAGTTGACGAACTGGGTGTCCGTACATTGAAAGAAAATAGTATTTTGAATGAACAGCGTGTGATAATAAAGATCATCTGTCGTTTTAAAACCTGACAAATTGCAAAATATGGTCTGCCACGGACAATGGACATGCGACAACTATTACGAGAAAAAGGTACCGTAATCTTAATGTTGGAGCGTTATGAAATAACCGATTT</canonical>
            <polymorphic>TGAACGCTCATTATTCAAATATAATTATAGTTTACTTTGATAAATTTTAAAGCATAATAAAAACTGTATTGCTGTATAACCTGTTAGAAAAGCTTTTCTAATAAAGGGTTTCCCGTATAAGACCCTTCCGGGGTACTTTGAAACAATAGAATCCTCTGTCCTTACAATTTTCGTTTTTCTCAAGGATTCGAAATTTAACTGTCAGTCGAATTGGATAACTGCCATTTCGAGGAACACCGTTATGATTTTCATTTGTATGACTTTTTACTCACGATAATGGCTGTTCAATTTCAGAAATTGATCAAAAATATCTGAAGAACATTTCGACTATCTTCTCAAAACTTTTACAAACACCGAATACGTTTTTGTTATACTACTGCATAAATTTTACGAAATTATTGAATTTCTATTAATAATATAACAGCAACTGCAGTAAAAAATGAACTGTGAACAAAAGATTTTAGATCTGATTTGAATACTATTCGTTATGATTTTAGCCYTAATTAGAACTTGAAACATCTGAAACTACAGTAAAGTACTCACCAAGAATATTTTGATAGACCACGAAGATTGAAAATTATGTTTGAAATTAGTAAAGAAGTTTAGAATACTCTCTGCTAGTAACCTTGAAAAGAAAAACAGTAAATGTTGTTACCGTAACACTACAAGGATGACCCTCCCCTTTAATTTTAGTTCTGGGTCAATTAACTTTGGATTTATTAAATTTTATAATTATCATAAATATTTCGTACGTTGAAATCTATTTGATAATCTCTACAGAAAATGAGATTTATTGGCTCAAAGTTGACGAACTGGGTGTCCGTACATTGAAAGAAAATAGTATTTTGAATGAACAGCGTGTGATAATAAAGATCATCTGTCGTTTTAAAACCTGACAAATTGCAAAATATGGTCTGCCACGGACAATGGACATGCGACAACTATTACGAGAAAAAGGTACCGTAATCTTAATGTTGGAGCGTTATGAAATAACCGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>215 184 166 148 90 83 47 31 21 15</canonical_bands>
                <polymorphic_bands>274 215 166 148 83 47 31 21 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTCAAAACTTTTACAAACACC</pcr_primer_p1>
		<pcr_primer_p2>TAATTTTCAATCTTCGTGGTCTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTCTCAAAACTTTTACAAACACCGAATACGTTTTTGTTATACTACTGCATAAATTTTACGAAATTATTGAATTTCTATTAATAATATAACAGCAACTGCAGTAAAAAATGAACTGTGAACAAAAGATTTTAGATCTGATTTGAATACTATTCGTTATGATTTTAGCCTTAATTAGAACTTGAAACATCTGAAACTACAGTAAAGTACTCACCAAGAATATTTTGATAGACCACGAAGATTGAAAATTA</canonical_amplicon>
		<polymorphic_amplicon>TTCTCAAAACTTTTACAAACACCGAATACGTTTTTGTTATACTACTGCATAAATTTTACGAAATTATTGAATTTCTATTAATAATATAACAGCAACTGCAGTAAAAAATGAACTGTGAACAAAAGATTTTAGATCTGATTTGAATACTATTCGTTATGATTTTAGCCYTAATTAGAACTTGAAACATCTGAAACTACAGTAAAGTACTCACCAAGAATATTTTGATAGACCACGAAGATTGAAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20373</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>858600</contig_pos>
        <strand>+</strand>
        <context>ACTTGAAACA[C/T]CTGAAACTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTTGAATACTATTCGTTATGATTTTAGCCTTAATTAGAACTTGAAACA</left_flank>
        <right_flank>CTGAAACTACAGTAAAGTACTCACCAAGAATATTTTGATAGACCACGAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATAATTATAGTTTACTTTGATAAATTTTAAAGCATAATAAAAACTGTATTGCTGTATAACCTGTTAGAAAAGCTTTTCTAATAAAGGGTTTCCCGTATAAGACCCTTCCGGGGTACTTTGAAACAATAGAATCCTCTGTCCTTACAATTTTCGTTTTTCTCAAGGATTCGAAATTTAACTGTCAGTCGAATTGGATAACTGCCATTTCGAGGAACACCGTTATGATTTTCATTTGTATGACTTTTTACTCACGATAATGGCTGTTCAATTTCAGAAATTGATCAAAAATATCTGAAGAACATTTCGACTATCTTCTCAAAACTTTTACAAACACCGAATACGTTTTTGTTATACTACTGCATAAATTTTACGAAATTATTGAATTTCTATTAATAATATAACAGCAACTGCAGTAAAAAATGAACTGTGAACAAAAGATTTTAGATCTGATTTGAATACTATTCGTTATGATTTTAGCCTTAATTAGAACTTGAAACATCTGAAACTACAGTAAAGTACTCACCAAGAATATTTTGATAGACCACGAAGATTGAAAATTATGTTTGAAATTAGTAAAGAAGTTTAGAATACTCTCTGCTAGTAACCTTGAAAAGAAAAACAGTAAATGTTGTTACCGTAACACTACAAGGATGACCCTCCCCTTTAATTTTAGTTCTGGGTCAATTAACTTTGGATTTATTAAATTTTATAATTATCATAAATATTTCGTACGTTGAAATCTATTTGATAATCTCTACAGAAAATGAGATTTATTGGCTCAAAGTTGACGAACTGGGTGTCCGTACATTGAAAGAAAATAGTATTTTGAATGAACAGCGTGTGATAATAAAGATCATCTGTCGTTTTAAAACCTGACAAATTGCAAAATATGGTCTGCCACGGACAATGGACATGCGACAACTATTACGAGAAAAAGGTACCGTAATCTTAATGTTGGAGCGTTATGAAATAACCGATTTATTAGTGACGAAAATGTTT</canonical>
            <polymorphic>TATAATTATAGTTTACTTTGATAAATTTTAAAGCATAATAAAAACTGTATTGCTGTATAACCTGTTAGAAAAGCTTTTCTAATAAAGGGTTTCCCGTATAAGACCCTTCCGGGGTACTTTGAAACAATAGAATCCTCTGTCCTTACAATTTTCGTTTTTCTCAAGGATTCGAAATTTAACTGTCAGTCGAATTGGATAACTGCCATTTCGAGGAACACCGTTATGATTTTCATTTGTATGACTTTTTACTCACGATAATGGCTGTTCAATTTCAGAAATTGATCAAAAATATCTGAAGAACATTTCGACTATCTTCTCAAAACTTTTACAAACACCGAATACGTTTTTGTTATACTACTGCATAAATTTTACGAAATTATTGAATTTCTATTAATAATATAACAGCAACTGCAGTAAAAAATGAACTGTGAACAAAAGATTTTAGATCTGATTTGAATACTATTCGTTATGATTTTAGCCTTAATTAGAACTTGAAACAYCTGAAACTACAGTAAAGTACTCACCAAGAATATTTTGATAGACCACGAAGATTGAAAATTATGTTTGAAATTAGTAAAGAAGTTTAGAATACTCTCTGCTAGTAACCTTGAAAAGAAAAACAGTAAATGTTGTTACCGTAACACTACAAGGATGACCCTCCCCTTTAATTTTAGTTCTGGGTCAATTAACTTTGGATTTATTAAATTTTATAATTATCATAAATATTTCGTACGTTGAAATCTATTTGATAATCTCTACAGAAAATGAGATTTATTGGCTCAAAGTTGACGAACTGGGTGTCCGTACATTGAAAGAAAATAGTATTTTGAATGAACAGCGTGTGATAATAAAGATCATCTGTCGTTTTAAAACCTGACAAATTGCAAAATATGGTCTGCCACGGACAATGGACATGCGACAACTATTACGAGAAAAAGGTACCGTAATCTTAATGTTGGAGCGTTATGAAATAACCGATTTATTAGTGACGAAAATGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>498 274 155 53 20</canonical_bands>
                <polymorphic_bands>551 274 155 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTCAAAACTTTTACAAACACC</pcr_primer_p1>
		<pcr_primer_p2>TAATTTTCAATCTTCGTGGTCTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTCTCAAAACTTTTACAAACACCGAATACGTTTTTGTTATACTACTGCATAAATTTTACGAAATTATTGAATTTCTATTAATAATATAACAGCAACTGCAGTAAAAAATGAACTGTGAACAAAAGATTTTAGATCTGATTTGAATACTATTCGTTATGATTTTAGCCTTAATTAGAACTTGAAACATCTGAAACTACAGTAAAGTACTCACCAAGAATATTTTGATAGACCACGAAGATTGAAAATTA</canonical_amplicon>
		<polymorphic_amplicon>TTCTCAAAACTTTTACAAACACCGAATACGTTTTTGTTATACTACTGCATAAATTTTACGAAATTATTGAATTTCTATTAATAATATAACAGCAACTGCAGTAAAAAATGAACTGTGAACAAAAGATTTTAGATCTGATTTGAATACTATTCGTTATGATTTTAGCCTTAATTAGAACTTGAAACAYCTGAAACTACAGTAAAGTACTCACCAAGAATATTTTGATAGACCACGAAGATTGAAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20374</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>858733</contig_pos>
        <strand>+</strand>
        <context>GTAAATGTTG[C/T]TACCKTAACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTAGAATACTCTCTGCTAGTAACCTTGAAAAGAAAAACAGTAAATGTTG</left_flank>
        <right_flank>TACCGTAACACTACAAGGATGACCCTCCCCTTTAATTTTAGTTCTGGGTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTCTGTCCTTACAATTTTCGTTTTTCTCAAGGATTCGAAATTTAACTGTCAGTCGAATTGGATAACTGCCATTTCGAGGAACACCGTTATGATTTTCATTTGTATGACTTTTTACTCACGATAATGGCTGTTCAATTTCAGAAATTGATCAAAAATATCTGAAGAACATTTCGACTATCTTCTCAAAACTTTTACAAACACCGAATACGTTTTTGTTATACTACTGCATAAATTTTACGAAATTATTGAATTTCTATTAATAATATAACAGCAACTGCAGTAAAAAATGAACTGTGAACAAAAGATTTTAGATCTGATTTGAATACTATTCGTTATGATTTTAGCCTTAATTAGAACTTGAAACATCTGAAACTACAGTAAAGTACTCACCAAGAATATTTTGATAGACCACGAAGATTGAAAATTATGTTTGAAATTAGTAAAGAAGTTTAGAATACTCTCTGCTAGTAACCTTGAAAAGAAAAACAGTAAATGTTGTTACCGTAACACTACAAGGATGACCCTCCCCTTTAATTTTAGTTCTGGGTCAATTAACTTTGGATTTATTAAATTTTATAATTATCATAAATATTTCGTACGTTGAAATCTATTTGATAATCTCTACAGAAAATGAGATTTATTGGCTCAAAGTTGACGAACTGGGTGTCCGTACATTGAAAGAAAATAGTATTTTGAATGAACAGCGTGTGATAATAAAGATCATCTGTCGTTTTAAAACCTGACAAATTGCAAAATATGGTCTGCCACGGACAATGGACATGCGACAACTATTACGAGAAAAAGGTACCGTAATCTTAATGTTGGAGCGTTATGAAATAACCGATTTATTAGTGACGAAAATGTTTTCAACGATATTTAGTTATGGGTTAAATTATGAATCAAGCTTGTTTTTCTATTTGCAGTCCATTTTTTTCATTTAACAAGGTTTTTTTTGTTTTTTCTTTAAAACAACCACTACAAAGAATACCCAAAACTAGT</canonical>
            <polymorphic>CCTCTGTCCTTACAATTTTCGTTTTTCTCAAGGATTCGAAATTTAACTGTCAGTCGAATTGGATAACTGCCATTTCGAGGAACACCGTTATGATTTTCATTTGTATGACTTTTTACTCACGATAATGGCTGTTCAATTTCAGAAATTGATCAAAAATATCTGAAGAACATTTCGACTATCTTCTCAAAACTTTTACAAACACCGAATACGTTTTTGTTATACTACTGCATAAATTTTACGAAATTATTGAATTTCTATTAATAATATAACAGCAACTGCAGTAAAAAATGAACTGTGAACAAAAGATTTTAGATCTGATTTGAATACTATTCGTTATGATTTTAGCCTTAATTAGAACTTGAAACATCTGAAACTACAGTAAAGTACTCACCAAGAATATTTTGATAGACCACGAAGATTGAAAATTATGTTTGAAATTAGTAAAGAAGTTTAGAATACTCTCTGCTAGTAACCTTGAAAAGAAAAACAGTAAATGTTGYTACCGTAACACTACAAGGATGACCCTCCCCTTTAATTTTAGTTCTGGGTCAATTAACTTTGGATTTATTAAATTTTATAATTATCATAAATATTTCGTACGTTGAAATCTATTTGATAATCTCTACAGAAAATGAGATTTATTGGCTCAAAGTTGACGAACTGGGTGTCCGTACATTGAAAGAAAATAGTATTTTGAATGAACAGCGTGTGATAATAAAGATCATCTGTCGTTTTAAAACCTGACAAATTGCAAAATATGGTCTGCCACGGACAATGGACATGCGACAACTATTACGAGAAAAAGGTACCGTAATCTTAATGTTGGAGCGTTATGAAATAACCGATTTATTAGTGACGAAAATGTTTTCAACGATATTTAGTTATGGGTTAAATTATGAATCAAGCTTGTTTTTCTATTTGCAGTCCATTTTTTTCATTTAACAAGGTTTTTTTTGTTTTTTCTTTAAAACAACCACTACAAAGAATACCCAAAACTAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>468 348 148 30 6</canonical_bands>
                <polymorphic_bands>468 348 148 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACTGTGAACAAAAGATTTTAGA</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTTAATTGACCCAGAACTA</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>GAACTGTGAACAAAAGATTTTAGATCTGATTTGAATACTATTCGTTATGATTTTAGCCTTAATTAGAACTTGAAACATCTGAAACTACAGTAAAGTACTCACCAAGAATATTTTGATAGACCACGAAGATTGAAAATTATGTTTGAAATTAGTAAAGAAGTTTAGAATACTCTCTGCTAGTAACCTTGAAAAGAAAAACAGTAAATGTTGTTACCGTAACACTACAAGGATGACCCTCCCCTTTAATTTTAGTTCTGGGTCAATTAACTTTG</canonical_amplicon>
		<polymorphic_amplicon>GAACTGTGAACAAAAGATTTTAGATCTGATTTGAATACTATTCGTTATGATTTTAGCCTTAATTAGAACTTGAAACATCTGAAACTACAGTAAAGTACTCACCAAGAATATTTTGATAGACCACGAAGATTGAAAATTATGTTTGAAATTAGTAAAGAAGTTTAGAATACTCTCTGCTAGTAACCTTGAAAAGAAAAACAGTAAATGTTGYTACCGTAACACTACAAGGATGACCCTCCCCTTTAATTTTAGTTCTGGGTCAATTAACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20375</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>858738</contig_pos>
        <strand>+</strand>
        <context>TGTTGYTACC[G/T]TAACACTACA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATACTCTCTGCTAGTAACCTTGAAAAGAAAAACAGTAAATGTTGTTACC</left_flank>
        <right_flank>TAACACTACAAGGATGACCCTCCCCTTTAATTTTAGTTCTGGGTCAATTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCCTTACAATTTTCGTTTTTCTCAAGGATTCGAAATTTAACTGTCAGTCGAATTGGATAACTGCCATTTCGAGGAACACCGTTATGATTTTCATTTGTATGACTTTTTACTCACGATAATGGCTGTTCAATTTCAGAAATTGATCAAAAATATCTGAAGAACATTTCGACTATCTTCTCAAAACTTTTACAAACACCGAATACGTTTTTGTTATACTACTGCATAAATTTTACGAAATTATTGAATTTCTATTAATAATATAACAGCAACTGCAGTAAAAAATGAACTGTGAACAAAAGATTTTAGATCTGATTTGAATACTATTCGTTATGATTTTAGCCTTAATTAGAACTTGAAACATCTGAAACTACAGTAAAGTACTCACCAAGAATATTTTGATAGACCACGAAGATTGAAAATTATGTTTGAAATTAGTAAAGAAGTTTAGAATACTCTCTGCTAGTAACCTTGAAAAGAAAAACAGTAAATGTTGTTACCGTAACACTACAAGGATGACCCTCCCCTTTAATTTTAGTTCTGGGTCAATTAACTTTGGATTTATTAAATTTTATAATTATCATAAATATTTCGTACGTTGAAATCTATTTGATAATCTCTACAGAAAATGAGATTTATTGGCTCAAAGTTGACGAACTGGGTGTCCGTACATTGAAAGAAAATAGTATTTTGAATGAACAGCGTGTGATAATAAAGATCATCTGTCGTTTTAAAACCTGACAAATTGCAAAATATGGTCTGCCACGGACAATGGACATGCGACAACTATTACGAGAAAAAGGTACCGTAATCTTAATGTTGGAGCGTTATGAAATAACCGATTTATTAGTGACGAAAATGTTTTCAACGATATTTAGTTATGGGTTAAATTATGAATCAAGCTTGTTTTTCTATTTGCAGTCCATTTTTTTCATTTAACAAGGTTTTTTTTGTTTTTTCTTTAAAACAACCACTACAAAGAATACCCAAAACTAGTAACCT</canonical>
            <polymorphic>GTCCTTACAATTTTCGTTTTTCTCAAGGATTCGAAATTTAACTGTCAGTCGAATTGGATAACTGCCATTTCGAGGAACACCGTTATGATTTTCATTTGTATGACTTTTTACTCACGATAATGGCTGTTCAATTTCAGAAATTGATCAAAAATATCTGAAGAACATTTCGACTATCTTCTCAAAACTTTTACAAACACCGAATACGTTTTTGTTATACTACTGCATAAATTTTACGAAATTATTGAATTTCTATTAATAATATAACAGCAACTGCAGTAAAAAATGAACTGTGAACAAAAGATTTTAGATCTGATTTGAATACTATTCGTTATGATTTTAGCCTTAATTAGAACTTGAAACATCTGAAACTACAGTAAAGTACTCACCAAGAATATTTTGATAGACCACGAAGATTGAAAATTATGTTTGAAATTAGTAAAGAAGTTTAGAATACTCTCTGCTAGTAACCTTGAAAAGAAAAACAGTAAATGTTGTTACCKTAACACTACAAGGATGACCCTCCCCTTTAATTTTAGTTCTGGGTCAATTAACTTTGGATTTATTAAATTTTATAATTATCATAAATATTTCGTACGTTGAAATCTATTTGATAATCTCTACAGAAAATGAGATTTATTGGCTCAAAGTTGACGAACTGGGTGTCCGTACATTGAAAGAAAATAGTATTTTGAATGAACAGCGTGTGATAATAAAGATCATCTGTCGTTTTAAAACCTGACAAATTGCAAAATATGGTCTGCCACGGACAATGGACATGCGACAACTATTACGAGAAAAAGGTACCGTAATCTTAATGTTGGAGCGTTATGAAATAACCGATTTATTAGTGACGAAAATGTTTTCAACGATATTTAGTTATGGGTTAAATTATGAATCAAGCTTGTTTTTCTATTTGCAGTCCATTTTTTTCATTTAACAAGGTTTTTTTTGTTTTTTCTTTAAAACAACCACTACAAAGAATACCCAAAACTAGTAACCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>306 208 195 111 84 43 38 15</canonical_bands>
                <polymorphic_bands>321 208 195 111 84 43 38</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>463 348 146 30 7 6</canonical_bands>
                <polymorphic_bands>463 354 146 30 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACTGTGAACAAAAGATTTTAGA</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTTAATTGACCCAGAACTA</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>GAACTGTGAACAAAAGATTTTAGATCTGATTTGAATACTATTCGTTATGATTTTAGCCTTAATTAGAACTTGAAACATCTGAAACTACAGTAAAGTACTCACCAAGAATATTTTGATAGACCACGAAGATTGAAAATTATGTTTGAAATTAGTAAAGAAGTTTAGAATACTCTCTGCTAGTAACCTTGAAAAGAAAAACAGTAAATGTTGTTACCGTAACACTACAAGGATGACCCTCCCCTTTAATTTTAGTTCTGGGTCAATTAACTTTG</canonical_amplicon>
		<polymorphic_amplicon>GAACTGTGAACAAAAGATTTTAGATCTGATTTGAATACTATTCGTTATGATTTTAGCCTTAATTAGAACTTGAAACATCTGAAACTACAGTAAAGTACTCACCAAGAATATTTTGATAGACCACGAAGATTGAAAATTATGTTTGAAATTAGTAAAGAAGTTTAGAATACTCTCTGCTAGTAACCTTGAAAAGAAAAACAGTAAATGTTGTTACCKTAACACTACAAGGATGACCCTCCCCTTTAATTTTAGTTCTGGGTCAATTAACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20376</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>858760</contig_pos>
        <strand>+</strand>
        <context>GGATGACCCT[C/T]CCCTTTAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAAGAAAAACAGTAAATGTTGTTACCGTAACACTACAAGGATGACCCT</left_flank>
        <right_flank>CCCTTTAATTTTAGTTCTGGGTCAATTAACTTTGGATTTATTAAATTTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAGGATTCGAAATTTAACTGTCAGTCGAATTGGATAACTGCCATTTCGAGGAACACCGTTATGATTTTCATTTGTATGACTTTTTACTCACGATAATGGCTGTTCAATTTCAGAAATTGATCAAAAATATCTGAAGAACATTTCGACTATCTTCTCAAAACTTTTACAAACACCGAATACGTTTTTGTTATACTACTGCATAAATTTTACGAAATTATTGAATTTCTATTAATAATATAACAGCAACTGCAGTAAAAAATGAACTGTGAACAAAAGATTTTAGATCTGATTTGAATACTATTCGTTATGATTTTAGCCTTAATTAGAACTTGAAACATCTGAAACTACAGTAAAGTACTCACCAAGAATATTTTGATAGACCACGAAGATTGAAAATTATGTTTGAAATTAGTAAAGAAGTTTAGAATACTCTCTGCTAGTAACCTTGAAAAGAAAAACAGTAAATGTTGTTACCGTAACACTACAAGGATGACCCTCCCCTTTAATTTTAGTTCTGGGTCAATTAACTTTGGATTTATTAAATTTTATAATTATCATAAATATTTCGTACGTTGAAATCTATTTGATAATCTCTACAGAAAATGAGATTTATTGGCTCAAAGTTGACGAACTGGGTGTCCGTACATTGAAAGAAAATAGTATTTTGAATGAACAGCGTGTGATAATAAAGATCATCTGTCGTTTTAAAACCTGACAAATTGCAAAATATGGTCTGCCACGGACAATGGACATGCGACAACTATTACGAGAAAAAGGTACCGTAATCTTAATGTTGGAGCGTTATGAAATAACCGATTTATTAGTGACGAAAATGTTTTCAACGATATTTAGTTATGGGTTAAATTATGAATCAAGCTTGTTTTTCTATTTGCAGTCCATTTTTTTCATTTAACAAGGTTTTTTTTGTTTTTTCTTTAAAACAACCACTACAAAGAATACCCAAAACTAGTAACCTAACTCGAAGACAGAATATTGCG</canonical>
            <polymorphic>TCAAGGATTCGAAATTTAACTGTCAGTCGAATTGGATAACTGCCATTTCGAGGAACACCGTTATGATTTTCATTTGTATGACTTTTTACTCACGATAATGGCTGTTCAATTTCAGAAATTGATCAAAAATATCTGAAGAACATTTCGACTATCTTCTCAAAACTTTTACAAACACCGAATACGTTTTTGTTATACTACTGCATAAATTTTACGAAATTATTGAATTTCTATTAATAATATAACAGCAACTGCAGTAAAAAATGAACTGTGAACAAAAGATTTTAGATCTGATTTGAATACTATTCGTTATGATTTTAGCCTTAATTAGAACTTGAAACATCTGAAACTACAGTAAAGTACTCACCAAGAATATTTTGATAGACCACGAAGATTGAAAATTATGTTTGAAATTAGTAAAGAAGTTTAGAATACTCTCTGCTAGTAACCTTGAAAAGAAAAACAGTAAATGTTGTTACCGTAACACTACAAGGATGACCCTYCCCTTTAATTTTAGTTCTGGGTCAATTAACTTTGGATTTATTAAATTTTATAATTATCATAAATATTTCGTACGTTGAAATCTATTTGATAATCTCTACAGAAAATGAGATTTATTGGCTCAAAGTTGACGAACTGGGTGTCCGTACATTGAAAGAAAATAGTATTTTGAATGAACAGCGTGTGATAATAAAGATCATCTGTCGTTTTAAAACCTGACAAATTGCAAAATATGGTCTGCCACGGACAATGGACATGCGACAACTATTACGAGAAAAAGGTACCGTAATCTTAATGTTGGAGCGTTATGAAATAACCGATTTATTAGTGACGAAAATGTTTTCAACGATATTTAGTTATGGGTTAAATTATGAATCAAGCTTGTTTTTCTATTTGCAGTCCATTTTTTTCATTTAACAAGGTTTTTTTTGTTTTTTCTTTAAAACAACCACTACAAAGAATACCCAAAACTAGTAACCTAACTCGAAGACAGAATATTGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTTGAAAAGAAAAACAGTAAA</pcr_primer_p1>
		<pcr_primer_p2>ATCTTTATTATCACACGCTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACCTTGAAAAGAAAAACAGTAAATGTTGTTACCGTAACACTACAAGGATGACCCTCCCCTTTAATTTTAGTTCTGGGTCAATTAACTTTGGATTTATTAAATTTTATAATTATCATAAATATTTCGTACGTTGAAATCTATTTGATAATCTCTACAGAAAATGAGATTTATTGGCTCAAAGTTGACGAACTGGGTGTCCGTACATTGAAAGAAAATAGTATTTTGAATGAACAGCGTGTGATAATAAAGAT</canonical_amplicon>
		<polymorphic_amplicon>ACCTTGAAAAGAAAAACAGTAAATGTTGTTACCGTAACACTACAAGGATGACCCTYCCCTTTAATTTTAGTTCTGGGTCAATTAACTTTGGATTTATTAAATTTTATAATTATCATAAATATTTCGTACGTTGAAATCTATTTGATAATCTCTACAGAAAATGAGATTTATTGGCTCAAAGTTGACGAACTGGGTGTCCGTACATTGAAAGAAAATAGTATTTTGAATGAACAGCGTGTGATAATAAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20377</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>858921</contig_pos>
        <strand>+</strand>
        <context>GAAAGAAAAT[A/G]GTATTTTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTATTGGCTCAAAGTTGACGAACTGGGTGTCCGTACATTGAAAGAAAAT</left_flank>
        <right_flank>GTATTTTGAATGAACAGCGTGTGATAATAAAGATCATCTGTCGTTTTAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTTACAAACACCGAATACGTTTTTGTTATACTACTGCATAAATTTTACGAAATTATTGAATTTCTATTAATAATATAACAGCAACTGCAGTAAAAAATGAACTGTGAACAAAAGATTTTAGATCTGATTTGAATACTATTCGTTATGATTTTAGCCTTAATTAGAACTTGAAACATCTGAAACTACAGTAAAGTACTCACCAAGAATATTTTGATAGACCACGAAGATTGAAAATTATGTTTGAAATTAGTAAAGAAGTTTAGAATACTCTCTGCTAGTAACCTTGAAAAGAAAAACAGTAAATGTTGTTACCGTAACACTACAAGGATGACCCTCCCCTTTAATTTTAGTTCTGGGTCAATTAACTTTGGATTTATTAAATTTTATAATTATCATAAATATTTCGTACGTTGAAATCTATTTGATAATCTCTACAGAAAATGAGATTTATTGGCTCAAAGTTGACGAACTGGGTGTCCGTACATTGAAAGAAAATAGTATTTTGAATGAACAGCGTGTGATAATAAAGATCATCTGTCGTTTTAAAACCTGACAAATTGCAAAATATGGTCTGCCACGGACAATGGACATGCGACAACTATTACGAGAAAAAGGTACCGTAATCTTAATGTTGGAGCGTTATGAAATAACCGATTTATTAGTGACGAAAATGTTTTCAACGATATTTAGTTATGGGTTAAATTATGAATCAAGCTTGTTTTTCTATTTGCAGTCCATTTTTTTCATTTAACAAGGTTTTTTTTGTTTTTTCTTTAAAACAACCACTACAAAGAATACCCAAAACTAGTAACCTAACTCGAAGACAGAATATTGCGGACCAACTAACCCAAAAACATGGATCATCTGGATAAATAAAAATTAGTTACAGAACGAATACCAGAGAAATAACCCAGAAAGTACTCATCTTCGCTCCAAATGAAATGCAATGAAATACAGTACGACATGCTCAATTTATGCAAATTTGTGAGTAGAGAGC</canonical>
            <polymorphic>ACTTTTACAAACACCGAATACGTTTTTGTTATACTACTGCATAAATTTTACGAAATTATTGAATTTCTATTAATAATATAACAGCAACTGCAGTAAAAAATGAACTGTGAACAAAAGATTTTAGATCTGATTTGAATACTATTCGTTATGATTTTAGCCTTAATTAGAACTTGAAACATCTGAAACTACAGTAAAGTACTCACCAAGAATATTTTGATAGACCACGAAGATTGAAAATTATGTTTGAAATTAGTAAAGAAGTTTAGAATACTCTCTGCTAGTAACCTTGAAAAGAAAAACAGTAAATGTTGTTACCGTAACACTACAAGGATGACCCTCCCCTTTAATTTTAGTTCTGGGTCAATTAACTTTGGATTTATTAAATTTTATAATTATCATAAATATTTCGTACGTTGAAATCTATTTGATAATCTCTACAGAAAATGAGATTTATTGGCTCAAAGTTGACGAACTGGGTGTCCGTACATTGAAAGAAAATRGTATTTTGAATGAACAGCGTGTGATAATAAAGATCATCTGTCGTTTTAAAACCTGACAAATTGCAAAATATGGTCTGCCACGGACAATGGACATGCGACAACTATTACGAGAAAAAGGTACCGTAATCTTAATGTTGGAGCGTTATGAAATAACCGATTTATTAGTGACGAAAATGTTTTCAACGATATTTAGTTATGGGTTAAATTATGAATCAAGCTTGTTTTTCTATTTGCAGTCCATTTTTTTCATTTAACAAGGTTTTTTTTGTTTTTTCTTTAAAACAACCACTACAAAGAATACCCAAAACTAGTAACCTAACTCGAAGACAGAATATTGCGGACCAACTAACCCAAAAACATGGATCATCTGGATAAATAAAAATTAGTTACAGAACGAATACCAGAGAAATAACCCAGAAAGTACTCATCTTCGCTCCAAATGAAATGCAATGAAATACAGTACGACATGCTCAATTTATGCAAATTTGTGAGTAGAGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGTCAATTAACTTTGGATTTAT</pcr_primer_p1>
		<pcr_primer_p2>TAATAGTTGTCGCATGTCCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGGTCAATTAACTTTGGATTTATTAAATTTTATAATTATCATAAATATTTCGTACGTTGAAATCTATTTGATAATCTCTACAGAAAATGAGATTTATTGGCTCAAAGTTGACGAACTGGGTGTCCGTACATTGAAAGAAAATAGTATTTTGAATGAACAGCGTGTGATAATAAAGATCATCTGTCGTTTTAAAACCTGACAAATTGCAAAATATGGTCTGCCACGGACAATGGACATGCGACAACTATTA</canonical_amplicon>
		<polymorphic_amplicon>GGGTCAATTAACTTTGGATTTATTAAATTTTATAATTATCATAAATATTTCGTACGTTGAAATCTATTTGATAATCTCTACAGAAAATGAGATTTATTGGCTCAAAGTTGACGAACTGGGTGTCCGTACATTGAAAGAAAATRGTATTTTGAATGAACAGCGTGTGATAATAAAGATCATCTGTCGTTTTAAAACCTGACAAATTGCAAAATATGGTCTGCCACGGACAATGGACATGCGACAACTATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20378</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>861030</contig_pos>
        <strand>+</strand>
        <context>ATATATGCTW[A/G]AAAATACGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCATCGAACAAAAATTATCAAAAATGAATACGATATGCGATATATGCTT</left_flank>
        <right_flank>AAAATACGGTAATTCTTGCGCCTTTAAATTCTTTTGCACTTTTATATGCG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGTAGTATTTGTAGGAGAGAATCTCATTTTTAAAAGTAATTGTTTTTCAAATCGCTCAGGTAAACGTGTAGTTCTAAATTACAGTCCTGATTTTGATTCTCCAAAATTAAAACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGTCTACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAAAATTCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGTCAGGCGCATGTAAACAGCAAACTACCGTAACCGTTCCTCTATTTTTTCATTTTTTGAATTTTCATTATTTTAAATCAATTTTTCCGATTCGCATCGAACAAAAATTATCAAAAATGAATACGATATGCGATATATGCTTAAAAATACGGTAATTCTTGCGCCTTTAAATTCTTTTGCACTTTTATATGCGCTTTTCACATGACCGTAATTAAATTCACAACTGGTCTTAATTTTTAATATTCAAAAATATACAAATACCGTATTTCTTCTAATAGAAGCCCACCTCTAATAGAAGCCCACCCCGCAAGGTGCTTCGAAAAATAGAAGCCCACCCTCTAATAGAAGCTCATGGGCGTCTATTAGAGAAAATTCGATGATTAAAAATTTCAGAATTTTTGGAACTGGTATTTTAGAACTTGAAAATTTCTCAATTTCTGATATACAAAATCCCTGAATTTTGTATTTTGAGATTCTGGAATCTCAGAATTTCATCAATTCCGAATTTCGGAGTTTAAAATTGCAGAATGAAAACTTCGAATTCGAAAGAAAACCTCGAAGTTCAGAATTCTTAACTTCCGAATTGCCAAATTTCTGATCTTTTGAACAAATTTTTTTTGAAAATTAATCATTGAAAAATAGA</canonical>
            <polymorphic>ATTGTAGTATTTGTAGGAGAGAATCTCATTTTTAAAAGTAATTGTTTTTCAAATCGCTCAGGTAAACGTGTAGTTCTAAATTACAGTCCTGATTTTGATTCTCCAAAATTAAAACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGTCTACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAAAATTCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGTCAGGCGCATGTAAACAGCAAACTACCGTAACCGTTCCTCTATTTTTTCATTTTTTGAATTTTCATTATTTTAAATCAATTTTTCCGATTCGCATCGAACAAAAATTATCAAAAATGAATACGATATGCGATATATGCTTRAAAATACGGTAATTCTTGCGCCTTTAAATTCTTTTGCACTTTTATATGCGCTTTTCACATGACCGTAATTAAATTCACAACTGGTCTTAATTTTTAATATTCAAAAATATACAAATACCGTATTTCTTCTAATAGAAGCCCACCTCTAATAGAAGCCCACCCCGCAAGGTGCTTCGAAAAATAGAAGCCCACCCTCTAATAGAAGCTCATGGGCGTCTATTAGAGAAAATTCGATGATTAAAAATTTCAGAATTTTTGGAACTGGTATTTTAGAACTTGAAAATTTCTCAATTTCTGATATACAAAATCCCTGAATTTTGTATTTTGAGATTCTGGAATCTCAGAATTTCATCAATTCCGAATTTCGGAGTTTAAAATTGCAGAATGAAAACTTCGAATTCGAAAGAAAACCTCGAAGTTCAGAATTCTTAACTTCCGAATTGCCAAATTTCTGATCTTTTGAACAAATTTTTTTTGAAAATTAATCATTGAAAAATAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>152 144 134 88 77 68 63 57 53 45 32 26 18 18 18 7</canonical_bands>
                <polymorphic_bands>152 144 134 94 88 77 63 57 53 45 32 18 18 18 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTAAACAGCAAACTACCGTAA</pcr_primer_p1>
		<pcr_primer_p2>TTAAAAATTAAGACCAGTTGTGAA</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>ATGTAAACAGCAAACTACCGTAACCGTTCCTCTATTTTTTCATTTTTTGAATTTTCATTATTTTAAATCAATTTTTCCGATTCGCATCGAACAAAAATTATCAAAAATGAATACGATATGCGATATATGCTTAAAAATACGGTAATTCTTGCGCCTTTAAATTCTTTTGCACTTTTATATGCGCTTTTCACATGACCGTAATTAAATTCACAACTGGTCTTAATTTTTAA</canonical_amplicon>
		<polymorphic_amplicon>ATGTAAACAGCAAACTACCGTAACCGTTCCTCTATTTTTTCATTTTTTGAATTTTCATTATTTTAAATCAATTTTTCCGATTCGCATCGAACAAAAATTATCAAAAATGAATACGATATGCGATATATGCTTRAAAATACGGTAATTCTTGCGCCTTTAAATTCTTTTGCACTTTTATATGCGCTTTTCACATGACCGTAATTAAATTCACAACTGGTCTTAATTTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20379</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>861029</contig_pos>
        <strand>+</strand>
        <context>GATATATGCT[A/T]RAAAATACGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGCATCGAACAAAAATTATCAAAAATGAATACGATATGCGATATATGCT</left_flank>
        <right_flank>AAAAATACGGTAATTCTTGCGCCTTTAAATTCTTTTGCACTTTTATATGC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGTAGTATTTGTAGGAGAGAATCTCATTTTTAAAAGTAATTGTTTTTCAAATCGCTCAGGTAAACGTGTAGTTCTAAATTACAGTCCTGATTTTGATTCTCCAAAATTAAAACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGTCTACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAAAATTCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGTCAGGCGCATGTAAACAGCAAACTACCGTAACCGTTCCTCTATTTTTTCATTTTTTGAATTTTCATTATTTTAAATCAATTTTTCCGATTCGCATCGAACAAAAATTATCAAAAATGAATACGATATGCGATATATGCTTAAAAATACGGTAATTCTTGCGCCTTTAAATTCTTTTGCACTTTTATATGCGCTTTTCACATGACCGTAATTAAATTCACAACTGGTCTTAATTTTTAATATTCAAAAATATACAAATACCGTATTTCTTCTAATAGAAGCCCACCTCTAATAGAAGCCCACCCCGCAAGGTGCTTCGAAAAATAGAAGCCCACCCTCTAATAGAAGCTCATGGGCGTCTATTAGAGAAAATTCGATGATTAAAAATTTCAGAATTTTTGGAACTGGTATTTTAGAACTTGAAAATTTCTCAATTTCTGATATACAAAATCCCTGAATTTTGTATTTTGAGATTCTGGAATCTCAGAATTTCATCAATTCCGAATTTCGGAGTTTAAAATTGCAGAATGAAAACTTCGAATTCGAAAGAAAACCTCGAAGTTCAGAATTCTTAACTTCCGAATTGCCAAATTTCTGATCTTTTGAACAAATTTTTTTTGAAAATTAATCATTGAAAAATAG</canonical>
            <polymorphic>AATTGTAGTATTTGTAGGAGAGAATCTCATTTTTAAAAGTAATTGTTTTTCAAATCGCTCAGGTAAACGTGTAGTTCTAAATTACAGTCCTGATTTTGATTCTCCAAAATTAAAACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGTCTACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAAAATTCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGTCAGGCGCATGTAAACAGCAAACTACCGTAACCGTTCCTCTATTTTTTCATTTTTTGAATTTTCATTATTTTAAATCAATTTTTCCGATTCGCATCGAACAAAAATTATCAAAAATGAATACGATATGCGATATATGCTWAAAAATACGGTAATTCTTGCGCCTTTAAATTCTTTTGCACTTTTATATGCGCTTTTCACATGACCGTAATTAAATTCACAACTGGTCTTAATTTTTAATATTCAAAAATATACAAATACCGTATTTCTTCTAATAGAAGCCCACCTCTAATAGAAGCCCACCCCGCAAGGTGCTTCGAAAAATAGAAGCCCACCCTCTAATAGAAGCTCATGGGCGTCTATTAGAGAAAATTCGATGATTAAAAATTTCAGAATTTTTGGAACTGGTATTTTAGAACTTGAAAATTTCTCAATTTCTGATATACAAAATCCCTGAATTTTGTATTTTGAGATTCTGGAATCTCAGAATTTCATCAATTCCGAATTTCGGAGTTTAAAATTGCAGAATGAAAACTTCGAATTCGAAAGAAAACCTCGAAGTTCAGAATTCTTAACTTCCGAATTGCCAAATTTCTGATCTTTTGAACAAATTTTTTTTGAAAATTAATCATTGAAAAATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>152 144 134 88 77 68 63 57 53 45 33 26 18 18 17 7</canonical_bands>
                <polymorphic_bands>152 144 134 94 88 77 63 57 53 45 33 18 18 17 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTAAACAGCAAACTACCGTAA</pcr_primer_p1>
		<pcr_primer_p2>TTAAAAATTAAGACCAGTTGTGAA</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>ATGTAAACAGCAAACTACCGTAACCGTTCCTCTATTTTTTCATTTTTTGAATTTTCATTATTTTAAATCAATTTTTCCGATTCGCATCGAACAAAAATTATCAAAAATGAATACGATATGCGATATATGCTTAAAAATACGGTAATTCTTGCGCCTTTAAATTCTTTTGCACTTTTATATGCGCTTTTCACATGACCGTAATTAAATTCACAACTGGTCTTAATTTTTAA</canonical_amplicon>
		<polymorphic_amplicon>ATGTAAACAGCAAACTACCGTAACCGTTCCTCTATTTTTTCATTTTTTGAATTTTCATTATTTTAAATCAATTTTTCCGATTCGCATCGAACAAAAATTATCAAAAATGAATACGATATGCGATATATGCTWAAAAATACGGTAATTCTTGCGCCTTTAAATTCTTTTGCACTTTTATATGCGCTTTTCACATGACCGTAATTAAATTCACAACTGGTCTTAATTTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20380</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>860928</contig_pos>
        <strand>+</strand>
        <context>TAACCGTTCC[C/T]CTATTTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTAAGGACTCGTCAGGCGCATGTAAACAGCAAACTACCGTAACCGTTCC</left_flank>
        <right_flank>CTATTTTTTCATTTTTTGAATTTTCATTATTTTAAATCAATTTTTCCGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTGAATTCGTTTCTTTATTAGGGGAAACGAGGCAATAACATTTCGGAGTTGTTTCGTGTTGAACAACGTTTGTGTTGATCCTTAATCACTTTAGAAGTCAATTGTAGTATTTGTAGGAGAGAATCTCATTTTTAAAAGTAATTGTTTTTCAAATCGCTCAGGTAAACGTGTAGTTCTAAATTACAGTCCTGATTTTGATTCTCCAAAATTAAAACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGTCTACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAAAATTCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGTCAGGCGCATGTAAACAGCAAACTACCGTAACCGTTCCTCTATTTTTTCATTTTTTGAATTTTCATTATTTTAAATCAATTTTTCCGATTCGCATCGAACAAAAATTATCAAAAATGAATACGATATGCGATATATGCTTAAAAATACGGTAATTCTTGCGCCTTTAAATTCTTTTGCACTTTTATATGCGCTTTTCACATGACCGTAATTAAATTCACAACTGGTCTTAATTTTTAATATTCAAAAATATACAAATACCGTATTTCTTCTAATAGAAGCCCACCTCTAATAGAAGCCCACCCCGCAAGGTGCTTCGAAAAATAGAAGCCCACCCTCTAATAGAAGCTCATGGGCGTCTATTAGAGAAAATTCGATGATTAAAAATTTCAGAATTTTTGGAACTGGTATTTTAGAACTTGAAAATTTCTCAATTTCTGATATACAAAATCCCTGAATTTTGTATTTTGAGATTCTGGAATCTCAGAATTTCATCAATTCCGAATTTCGGAGTTTAAAATTGCAGAATGAAAACTTCGAA</canonical>
            <polymorphic>AAGTGAATTCGTTTCTTTATTAGGGGAAACGAGGCAATAACATTTCGGAGTTGTTTCGTGTTGAACAACGTTTGTGTTGATCCTTAATCACTTTAGAAGTCAATTGTAGTATTTGTAGGAGAGAATCTCATTTTTAAAAGTAATTGTTTTTCAAATCGCTCAGGTAAACGTGTAGTTCTAAATTACAGTCCTGATTTTGATTCTCCAAAATTAAAACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGTCTACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAAAATTCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGTCAGGCGCATGTAAACAGCAAACTACCGTAACCGTTCCYCTATTTTTTCATTTTTTGAATTTTCATTATTTTAAATCAATTTTTCCGATTCGCATCGAACAAAAATTATCAAAAATGAATACGATATGCGATATATGCTTAAAAATACGGTAATTCTTGCGCCTTTAAATTCTTTTGCACTTTTATATGCGCTTTTCACATGACCGTAATTAAATTCACAACTGGTCTTAATTTTTAATATTCAAAAATATACAAATACCGTATTTCTTCTAATAGAAGCCCACCTCTAATAGAAGCCCACCCCGCAAGGTGCTTCGAAAAATAGAAGCCCACCCTCTAATAGAAGCTCATGGGCGTCTATTAGAGAAAATTCGATGATTAAAAATTTCAGAATTTTTGGAACTGGTATTTTAGAACTTGAAAATTTCTCAATTTCTGATATACAAAATCCCTGAATTTTGTATTTTGAGATTCTGGAATCTCAGAATTTCATCAATTCCGAATTTCGGAGTTTAAAATTGCAGAATGAAAACTTCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTAATTTCGGGAGTTTTGTA</pcr_primer_p1>
		<pcr_primer_p2>ATTTAAAGGCGCAAGAATTAC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTTTAATTTCGGGAGTTTTGTAAAACCAAAATTCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGTCAGGCGCATGTAAACAGCAAACTACCGTAACCGTTCCTCTATTTTTTCATTTTTTGAATTTTCATTATTTTAAATCAATTTTTCCGATTCGCATCGAACAAAAATTATCAAAAATGAATACGATATGCGATATATGCTTAAAAATACGGTAATTCTTGCGCCTTTAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTTAATTTCGGGAGTTTTGTAAAACCAAAATTCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGTCAGGCGCATGTAAACAGCAAACTACCGTAACCGTTCCYCTATTTTTTCATTTTTTGAATTTTCATTATTTTAAATCAATTTTTCCGATTCGCATCGAACAAAAATTATCAAAAATGAATACGATATGCGATATATGCTTAAAAATACGGTAATTCTTGCGCCTTTAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20381</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>860863</contig_pos>
        <strand>+</strand>
        <context>TGTCCGTAAT[C/G]AGTACAAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCGGGAGTTTTGTAAAACCAAAATTCGCTCTATCACCCGTGTCCGTAAT</left_flank>
        <right_flank>AGTACAAATTACAAACTAAGGACTCGTCAGGCGCATGTAAACAGCAAACT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGGGGGGTCGAAACAAATGTTGTGTTGTTCGGTAAGCTATGTCTTCGGTACTTGTATGATGTCAAGTGAATTCGTTTCTTTATTAGGGGAAACGAGGCAATAACATTTCGGAGTTGTTTCGTGTTGAACAACGTTTGTGTTGATCCTTAATCACTTTAGAAGTCAATTGTAGTATTTGTAGGAGAGAATCTCATTTTTAAAAGTAATTGTTTTTCAAATCGCTCAGGTAAACGTGTAGTTCTAAATTACAGTCCTGATTTTGATTCTCCAAAATTAAAACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGTCTACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAAAATTCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGTCAGGCGCATGTAAACAGCAAACTACCGTAACCGTTCCTCTATTTTTTCATTTTTTGAATTTTCATTATTTTAAATCAATTTTTCCGATTCGCATCGAACAAAAATTATCAAAAATGAATACGATATGCGATATATGCTTAAAAATACGGTAATTCTTGCGCCTTTAAATTCTTTTGCACTTTTATATGCGCTTTTCACATGACCGTAATTAAATTCACAACTGGTCTTAATTTTTAATATTCAAAAATATACAAATACCGTATTTCTTCTAATAGAAGCCCACCTCTAATAGAAGCCCACCCCGCAAGGTGCTTCGAAAAATAGAAGCCCACCCTCTAATAGAAGCTCATGGGCGTCTATTAGAGAAAATTCGATGATTAAAAATTTCAGAATTTTTGGAACTGGTATTTTAGAACTTGAAAATTTCTCAATTTCTGATATACAAAATCCCTGAATTTTGTATTTTGAGATTC</canonical>
            <polymorphic>ATTGGGGGGTCGAAACAAATGTTGTGTTGTTCGGTAAGCTATGTCTTCGGTACTTGTATGATGTCAAGTGAATTCGTTTCTTTATTAGGGGAAACGAGGCAATAACATTTCGGAGTTGTTTCGTGTTGAACAACGTTTGTGTTGATCCTTAATCACTTTAGAAGTCAATTGTAGTATTTGTAGGAGAGAATCTCATTTTTAAAAGTAATTGTTTTTCAAATCGCTCAGGTAAACGTGTAGTTCTAAATTACAGTCCTGATTTTGATTCTCCAAAATTAAAACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGTCTACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAAAATTCGCTCTATCACCCGTGTCCGTAATSAGTACAAATTACAAACTAAGGACTCGTCAGGCGCATGTAAACAGCAAACTACCGTAACCGTTCCTCTATTTTTTCATTTTTTGAATTTTCATTATTTTAAATCAATTTTTCCGATTCGCATCGAACAAAAATTATCAAAAATGAATACGATATGCGATATATGCTTAAAAATACGGTAATTCTTGCGCCTTTAAATTCTTTTGCACTTTTATATGCGCTTTTCACATGACCGTAATTAAATTCACAACTGGTCTTAATTTTTAATATTCAAAAATATACAAATACCGTATTTCTTCTAATAGAAGCCCACCTCTAATAGAAGCCCACCCCGCAAGGTGCTTCGAAAAATAGAAGCCCACCCTCTAATAGAAGCTCATGGGCGTCTATTAGAGAAAATTCGATGATTAAAAATTTCAGAATTTTTGGAACTGGTATTTTAGAACTTGAAAATTTCTCAATTTCTGATATACAAAATCCCTGAATTTTGTATTTTGAGATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTAATTTCGGGAGTTTTGTA</pcr_primer_p1>
		<pcr_primer_p2>ATTTAAAGGCGCAAGAATTAC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTTTAATTTCGGGAGTTTTGTAAAACCAAAATTCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGTCAGGCGCATGTAAACAGCAAACTACCGTAACCGTTCCTCTATTTTTTCATTTTTTGAATTTTCATTATTTTAAATCAATTTTTCCGATTCGCATCGAACAAAAATTATCAAAAATGAATACGATATGCGATATATGCTTAAAAATACGGTAATTCTTGCGCCTTTAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTTAATTTCGGGAGTTTTGTAAAACCAAAATTCGCTCTATCACCCGTGTCCGTAATSAGTACAAATTACAAACTAAGGACTCGTCAGGCGCATGTAAACAGCAAACTACCGTAACCGTTCCTCTATTTTTTCATTTTTTGAATTTTCATTATTTTAAATCAATTTTTCCGATTCGCATCGAACAAAAATTATCAAAAATGAATACGATATGCGATATATGCTTAAAAATACGGTAATTCTTGCGCCTTTAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20382</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>860839</contig_pos>
        <strand>+</strand>
        <context>AACCAWRATY[A/C]GCTCTATCAC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAAAATT</left_flank>
        <right_flank>GCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCATATACTGAACCAGTTTTCAAATTGGGGGGTCGAAACAAATGTTGTGTTGTTCGGTAAGCTATGTCTTCGGTACTTGTATGATGTCAAGTGAATTCGTTTCTTTATTAGGGGAAACGAGGCAATAACATTTCGGAGTTGTTTCGTGTTGAACAACGTTTGTGTTGATCCTTAATCACTTTAGAAGTCAATTGTAGTATTTGTAGGAGAGAATCTCATTTTTAAAAGTAATTGTTTTTCAAATCGCTCAGGTAAACGTGTAGTTCTAAATTACAGTCCTGATTTTGATTCTCCAAAATTAAAACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGTCTACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAAAATTCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGTCAGGCGCATGTAAACAGCAAACTACCGTAACCGTTCCTCTATTTTTTCATTTTTTGAATTTTCATTATTTTAAATCAATTTTTCCGATTCGCATCGAACAAAAATTATCAAAAATGAATACGATATGCGATATATGCTTAAAAATACGGTAATTCTTGCGCCTTTAAATTCTTTTGCACTTTTATATGCGCTTTTCACATGACCGTAATTAAATTCACAACTGGTCTTAATTTTTAATATTCAAAAATATACAAATACCGTATTTCTTCTAATAGAAGCCCACCTCTAATAGAAGCCCACCCCGCAAGGTGCTTCGAAAAATAGAAGCCCACCCTCTAATAGAAGCTCATGGGCGTCTATTAGAGAAAATTCGATGATTAAAAATTTCAGAATTTTTGGAACTGGTATTTTAGAACTTGAAAATTTCTCAATTTCTGATATACAAAATC</canonical>
            <polymorphic>ATCATATACTGAACCAGTTTTCAAATTGGGGGGTCGAAACAAATGTTGTGTTGTTCGGTAAGCTATGTCTTCGGTACTTGTATGATGTCAAGTGAATTCGTTTCTTTATTAGGGGAAACGAGGCAATAACATTTCGGAGTTGTTTCGTGTTGAACAACGTTTGTGTTGATCCTTAATCACTTTAGAAGTCAATTGTAGTATTTGTAGGAGAGAATCTCATTTTTAAAAGTAATTGTTTTTCAAATCGCTCAGGTAAACGTGTAGTTCTAAATTACAGTCCTGATTTTGATTCTCCAAAATTAAAACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGTCTACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAAAATTMGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGTCAGGCGCATGTAAACAGCAAACTACCGTAACCGTTCCTCTATTTTTTCATTTTTTGAATTTTCATTATTTTAAATCAATTTTTCCGATTCGCATCGAACAAAAATTATCAAAAATGAATACGATATGCGATATATGCTTAAAAATACGGTAATTCTTGCGCCTTTAAATTCTTTTGCACTTTTATATGCGCTTTTCACATGACCGTAATTAAATTCACAACTGGTCTTAATTTTTAATATTCAAAAATATACAAATACCGTATTTCTTCTAATAGAAGCCCACCTCTAATAGAAGCCCACCCCGCAAGGTGCTTCGAAAAATAGAAGCCCACCCTCTAATAGAAGCTCATGGGCGTCTATTAGAGAAAATTCGATGATTAAAAATTTCAGAATTTTTGGAACTGGTATTTTAGAACTTGAAAATTTCTCAATTTCTGATATACAAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>251 156 112 110 94 91 49 45 31 28 15 10 8</canonical_bands>
                <polymorphic_bands>251 161 156 110 94 91 45 31 28 15 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACGTTTAGGTGTATTAATTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>CTGACGAGTCCTTAGTTTGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGTCTACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAAAATTCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGTCAG</canonical_amplicon>
		<polymorphic_amplicon>AACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGTCTACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAAAATTMGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20383</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>860838</contig_pos>
        <strand>+</strand>
        <context>AAACCAWRAT[C/T]MGCTCTATCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAAAAT</left_flank>
        <right_flank>CGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCATATACTGAACCAGTTTTCAAATTGGGGGGTCGAAACAAATGTTGTGTTGTTCGGTAAGCTATGTCTTCGGTACTTGTATGATGTCAAGTGAATTCGTTTCTTTATTAGGGGAAACGAGGCAATAACATTTCGGAGTTGTTTCGTGTTGAACAACGTTTGTGTTGATCCTTAATCACTTTAGAAGTCAATTGTAGTATTTGTAGGAGAGAATCTCATTTTTAAAAGTAATTGTTTTTCAAATCGCTCAGGTAAACGTGTAGTTCTAAATTACAGTCCTGATTTTGATTCTCCAAAATTAAAACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGTCTACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAAAATTCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGTCAGGCGCATGTAAACAGCAAACTACCGTAACCGTTCCTCTATTTTTTCATTTTTTGAATTTTCATTATTTTAAATCAATTTTTCCGATTCGCATCGAACAAAAATTATCAAAAATGAATACGATATGCGATATATGCTTAAAAATACGGTAATTCTTGCGCCTTTAAATTCTTTTGCACTTTTATATGCGCTTTTCACATGACCGTAATTAAATTCACAACTGGTCTTAATTTTTAATATTCAAAAATATACAAATACCGTATTTCTTCTAATAGAAGCCCACCTCTAATAGAAGCCCACCCCGCAAGGTGCTTCGAAAAATAGAAGCCCACCCTCTAATAGAAGCTCATGGGCGTCTATTAGAGAAAATTCGATGATTAAAAATTTCAGAATTTTTGGAACTGGTATTTTAGAACTTGAAAATTTCTCAATTTCTGATATACAAAAT</canonical>
            <polymorphic>CATCATATACTGAACCAGTTTTCAAATTGGGGGGTCGAAACAAATGTTGTGTTGTTCGGTAAGCTATGTCTTCGGTACTTGTATGATGTCAAGTGAATTCGTTTCTTTATTAGGGGAAACGAGGCAATAACATTTCGGAGTTGTTTCGTGTTGAACAACGTTTGTGTTGATCCTTAATCACTTTAGAAGTCAATTGTAGTATTTGTAGGAGAGAATCTCATTTTTAAAAGTAATTGTTTTTCAAATCGCTCAGGTAAACGTGTAGTTCTAAATTACAGTCCTGATTTTGATTCTCCAAAATTAAAACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGTCTACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAAAATYCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGTCAGGCGCATGTAAACAGCAAACTACCGTAACCGTTCCTCTATTTTTTCATTTTTTGAATTTTCATTATTTTAAATCAATTTTTCCGATTCGCATCGAACAAAAATTATCAAAAATGAATACGATATGCGATATATGCTTAAAAATACGGTAATTCTTGCGCCTTTAAATTCTTTTGCACTTTTATATGCGCTTTTCACATGACCGTAATTAAATTCACAACTGGTCTTAATTTTTAATATTCAAAAATATACAAATACCGTATTTCTTCTAATAGAAGCCCACCTCTAATAGAAGCCCACCCCGCAAGGTGCTTCGAAAAATAGAAGCCCACCCTCTAATAGAAGCTCATGGGCGTCTATTAGAGAAAATTCGATGATTAAAAATTTCAGAATTTTTGGAACTGGTATTTTAGAACTTGAAAATTTCTCAATTTCTGATATACAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>251 156 112 110 95 91 49 45 31 27 15 10 8</canonical_bands>
                <polymorphic_bands>251 161 156 110 95 91 45 31 27 15 10 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>139 96 77 71 48 40 40 39 35 33 31 29 28 26 26 25 24 24 22 20 19 17 16 15 11 10 10 8 8 8 5</canonical_bands>
                <polymorphic_bands>139 96 77 71 60 48 40 40 39 33 31 29 28 26 26 24 24 22 20 19 17 16 15 11 10 10 8 8 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACGTTTAGGTGTATTAATTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>CTGACGAGTCCTTAGTTTGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGTCTACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAAAATTCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGTCAG</canonical_amplicon>
		<polymorphic_amplicon>AACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGTCTACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAAAATYCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20384</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>860834</contig_pos>
        <strand>+</strand>
        <context>TGTAAAACCA[A/T]RATYMGCTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCA</left_flank>
        <right_flank>AATTCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCACATCATATACTGAACCAGTTTTCAAATTGGGGGGTCGAAACAAATGTTGTGTTGTTCGGTAAGCTATGTCTTCGGTACTTGTATGATGTCAAGTGAATTCGTTTCTTTATTAGGGGAAACGAGGCAATAACATTTCGGAGTTGTTTCGTGTTGAACAACGTTTGTGTTGATCCTTAATCACTTTAGAAGTCAATTGTAGTATTTGTAGGAGAGAATCTCATTTTTAAAAGTAATTGTTTTTCAAATCGCTCAGGTAAACGTGTAGTTCTAAATTACAGTCCTGATTTTGATTCTCCAAAATTAAAACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGTCTACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAAAATTCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGTCAGGCGCATGTAAACAGCAAACTACCGTAACCGTTCCTCTATTTTTTCATTTTTTGAATTTTCATTATTTTAAATCAATTTTTCCGATTCGCATCGAACAAAAATTATCAAAAATGAATACGATATGCGATATATGCTTAAAAATACGGTAATTCTTGCGCCTTTAAATTCTTTTGCACTTTTATATGCGCTTTTCACATGACCGTAATTAAATTCACAACTGGTCTTAATTTTTAATATTCAAAAATATACAAATACCGTATTTCTTCTAATAGAAGCCCACCTCTAATAGAAGCCCACCCCGCAAGGTGCTTCGAAAAATAGAAGCCCACCCTCTAATAGAAGCTCATGGGCGTCTATTAGAGAAAATTCGATGATTAAAAATTTCAGAATTTTTGGAACTGGTATTTTAGAACTTGAAAATTTCTCAATTTCTGATATACA</canonical>
            <polymorphic>TTCACATCATATACTGAACCAGTTTTCAAATTGGGGGGTCGAAACAAATGTTGTGTTGTTCGGTAAGCTATGTCTTCGGTACTTGTATGATGTCAAGTGAATTCGTTTCTTTATTAGGGGAAACGAGGCAATAACATTTCGGAGTTGTTTCGTGTTGAACAACGTTTGTGTTGATCCTTAATCACTTTAGAAGTCAATTGTAGTATTTGTAGGAGAGAATCTCATTTTTAAAAGTAATTGTTTTTCAAATCGCTCAGGTAAACGTGTAGTTCTAAATTACAGTCCTGATTTTGATTCTCCAAAATTAAAACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGTCTACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAWAATTCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGTCAGGCGCATGTAAACAGCAAACTACCGTAACCGTTCCTCTATTTTTTCATTTTTTGAATTTTCATTATTTTAAATCAATTTTTCCGATTCGCATCGAACAAAAATTATCAAAAATGAATACGATATGCGATATATGCTTAAAAATACGGTAATTCTTGCGCCTTTAAATTCTTTTGCACTTTTATATGCGCTTTTCACATGACCGTAATTAAATTCACAACTGGTCTTAATTTTTAATATTCAAAAATATACAAATACCGTATTTCTTCTAATAGAAGCCCACCTCTAATAGAAGCCCACCCCGCAAGGTGCTTCGAAAAATAGAAGCCCACCCTCTAATAGAAGCTCATGGGCGTCTATTAGAGAAAATTCGATGATTAAAAATTTCAGAATTTTTGGAACTGGTATTTTAGAACTTGAAAATTTCTCAATTTCTGATATACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>251 156 112 110 99 91 49 45 31 23 15 10 8</canonical_bands>
                <polymorphic_bands>251 161 156 110 99 91 45 31 23 15 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACGTTTAGGTGTATTAATTTTG</pcr_primer_p1>
		<pcr_primer_p2>ACGAGTCCTTAGTTTGTAATTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGTCTACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAAAATTCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGT</canonical_amplicon>
		<polymorphic_amplicon>AAAACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGTCTACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAWAATTCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20386</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>860771</contig_pos>
        <strand>+</strand>
        <context>CACAAACTGT[C/T]TACAAATTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGT</left_flank>
        <right_flank>TACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAATTCCTCATGCCTATGAAAAAAAGCACTCCGTTACACTTTTATGGATCTCTTTTCTTTTCTTCACATCATATACTGAACCAGTTTTCAAATTGGGGGGTCGAAACAAATGTTGTGTTGTTCGGTAAGCTATGTCTTCGGTACTTGTATGATGTCAAGTGAATTCGTTTCTTTATTAGGGGAAACGAGGCAATAACATTTCGGAGTTGTTTCGTGTTGAACAACGTTTGTGTTGATCCTTAATCACTTTAGAAGTCAATTGTAGTATTTGTAGGAGAGAATCTCATTTTTAAAAGTAATTGTTTTTCAAATCGCTCAGGTAAACGTGTAGTTCTAAATTACAGTCCTGATTTTGATTCTCCAAAATTAAAACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGTCTACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAAAATTCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGTCAGGCGCATGTAAACAGCAAACTACCGTAACCGTTCCTCTATTTTTTCATTTTTTGAATTTTCATTATTTTAAATCAATTTTTCCGATTCGCATCGAACAAAAATTATCAAAAATGAATACGATATGCGATATATGCTTAAAAATACGGTAATTCTTGCGCCTTTAAATTCTTTTGCACTTTTATATGCGCTTTTCACATGACCGTAATTAAATTCACAACTGGTCTTAATTTTTAATATTCAAAAATATACAAATACCGTATTTCTTCTAATAGAAGCCCACCTCTAATAGAAGCCCACCCCGCAAGGTGCTTCGAAAAATAGAAGCCCACCCTCTAATAGAAGCTCATGGGCGTCTATTAGAGAAAATTCGATGATTAA</canonical>
            <polymorphic>TGAATTCCTCATGCCTATGAAAAAAAGCACTCCGTTACACTTTTATGGATCTCTTTTCTTTTCTTCACATCATATACTGAACCAGTTTTCAAATTGGGGGGTCGAAACAAATGTTGTGTTGTTCGGTAAGCTATGTCTTCGGTACTTGTATGATGTCAAGTGAATTCGTTTCTTTATTAGGGGAAACGAGGCAATAACATTTCGGAGTTGTTTCGTGTTGAACAACGTTTGTGTTGATCCTTAATCACTTTAGAAGTCAATTGTAGTATTTGTAGGAGAGAATCTCATTTTTAAAAGTAATTGTTTTTCAAATCGCTCAGGTAAACGTGTAGTTCTAAATTACAGTCCTGATTTTGATTCTCCAAAATTAAAACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGTYTACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAAAATTCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGTCAGGCGCATGTAAACAGCAAACTACCGTAACCGTTCCTCTATTTTTTCATTTTTTGAATTTTCATTATTTTAAATCAATTTTTCCGATTCGCATCGAACAAAAATTATCAAAAATGAATACGATATGCGATATATGCTTAAAAATACGGTAATTCTTGCGCCTTTAAATTCTTTTGCACTTTTATATGCGCTTTTCACATGACCGTAATTAAATTCACAACTGGTCTTAATTTTTAATATTCAAAAATATACAAATACCGTATTTCTTCTAATAGAAGCCCACCTCTAATAGAAGCCCACCCCGCAAGGTGCTTCGAAAAATAGAAGCCCACCCTCTAATAGAAGCTCATGGGCGTCTATTAGAGAAAATTCGATGATTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACGTTTAGGTGTATTAATTTTG</pcr_primer_p1>
		<pcr_primer_p2>ACGAGTCCTTAGTTTGTAATTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGTCTACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAAAATTCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGT</canonical_amplicon>
		<polymorphic_amplicon>AAAACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGTYTACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAAAATTCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20387</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>860617</contig_pos>
        <strand>+</strand>
        <context>TAAATTAYAG[A/T]CCTGATTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTAATTGTTTTTCAAATCGCTCAGGTAAACGTGTAGTTCTAAATTACAG</left_flank>
        <right_flank>CCTGATTTTGATTCTCCAAAATTAAAACGTTTAGGTGTATTAATTTTGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTTTATATGAATATGAAATATAGGACTTCAATAGATCAATAACGTGCAGACTCCGTATGAACGGATGAATGACGACTTCTGAGAGCAATGCTTGTGGTGGTGACCCCTAACACCTGGTATTTTATGGTCGGCTTGGCCTCAGAATGTCCTTTTGAATTCCTCATGCCTATGAAAAAAAGCACTCCGTTACACTTTTATGGATCTCTTTTCTTTTCTTCACATCATATACTGAACCAGTTTTCAAATTGGGGGGTCGAAACAAATGTTGTGTTGTTCGGTAAGCTATGTCTTCGGTACTTGTATGATGTCAAGTGAATTCGTTTCTTTATTAGGGGAAACGAGGCAATAACATTTCGGAGTTGTTTCGTGTTGAACAACGTTTGTGTTGATCCTTAATCACTTTAGAAGTCAATTGTAGTATTTGTAGGAGAGAATCTCATTTTTAAAAGTAATTGTTTTTCAAATCGCTCAGGTAAACGTGTAGTTCTAAATTACAGTCCTGATTTTGATTCTCCAAAATTAAAACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGTCTACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAAAATTCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGTCAGGCGCATGTAAACAGCAAACTACCGTAACCGTTCCTCTATTTTTTCATTTTTTGAATTTTCATTATTTTAAATCAATTTTTCCGATTCGCATCGAACAAAAATTATCAAAAATGAATACGATATGCGATATATGCTTAAAAATACGGTAATTCTTGCGCCTTTAAATTCTTTTGCACTTTTATATGCGCTTTTCACATGACCGTAATTAAATTCACAACTGGTCT</canonical>
            <polymorphic>GGTTTTATATGAATATGAAATATAGGACTTCAATAGATCAATAACGTGCAGACTCCGTATGAACGGATGAATGACGACTTCTGAGAGCAATGCTTGTGGTGGTGACCCCTAACACCTGGTATTTTATGGTCGGCTTGGCCTCAGAATGTCCTTTTGAATTCCTCATGCCTATGAAAAAAAGCACTCCGTTACACTTTTATGGATCTCTTTTCTTTTCTTCACATCATATACTGAACCAGTTTTCAAATTGGGGGGTCGAAACAAATGTTGTGTTGTTCGGTAAGCTATGTCTTCGGTACTTGTATGATGTCAAGTGAATTCGTTTCTTTATTAGGGGAAACGAGGCAATAACATTTCGGAGTTGTTTCGTGTTGAACAACGTTTGTGTTGATCCTTAATCACTTTAGAAGTCAATTGTAGTATTTGTAGGAGAGAATCTCATTTTTAAAAGTAATTGTTTTTCAAATCGCTCAGGTAAACGTGTAGTTCTAAATTACAGWCCTGATTTTGATTCTCCAAAATTAAAACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGTCTACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAAAATTCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGTCAGGCGCATGTAAACAGCAAACTACCGTAACCGTTCCTCTATTTTTTCATTTTTTGAATTTTCATTATTTTAAATCAATTTTTCCGATTCGCATCGAACAAAAATTATCAAAAATGAATACGATATGCGATATATGCTTAAAAATACGGTAATTCTTGCGCCTTTAAATTCTTTTGCACTTTTATATGCGCTTTTCACATGACCGTAATTAAATTCACAACTGGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>498 153 116 113 56 35 23 6</canonical_bands>
                <polymorphic_bands>651 116 113 56 35 23 6</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>501 302 162 35</canonical_bands>
                <polymorphic_bands>663 302 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTGTGTTGATCCTTAATCACT</pcr_primer_p1>
		<pcr_primer_p2>AATAAGCTTTTCAAAAATCACAA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GTTTGTGTTGATCCTTAATCACTTTAGAAGTCAATTGTAGTATTTGTAGGAGAGAATCTCATTTTTAAAAGTAATTGTTTTTCAAATCGCTCAGGTAAACGTGTAGTTCTAAATTACAGTCCTGATTTTGATTCTCCAAAATTAAAACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATT</canonical_amplicon>
		<polymorphic_amplicon>GTTTGTGTTGATCCTTAATCACTTTAGAAGTCAATTGTAGTATTTGTAGGAGAGAATCTCATTTTTAAAAGTAATTGTTTTTCAAATCGCTCAGGTAAACGTGTAGTTCTAAATTACAGWCCTGATTTTGATTCTCCAAAATTAAAACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20388</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>860614</contig_pos>
        <strand>+</strand>
        <context>TTCTAAATTA[C/T]AGWCCTGATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAGTAATTGTTTTTCAAATCGCTCAGGTAAACGTGTAGTTCTAAATTA</left_flank>
        <right_flank>AGTCCTGATTTTGATTCTCCAAAATTAAAACGTTTAGGTGTATTAATTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGGTTTTATATGAATATGAAATATAGGACTTCAATAGATCAATAACGTGCAGACTCCGTATGAACGGATGAATGACGACTTCTGAGAGCAATGCTTGTGGTGGTGACCCCTAACACCTGGTATTTTATGGTCGGCTTGGCCTCAGAATGTCCTTTTGAATTCCTCATGCCTATGAAAAAAAGCACTCCGTTACACTTTTATGGATCTCTTTTCTTTTCTTCACATCATATACTGAACCAGTTTTCAAATTGGGGGGTCGAAACAAATGTTGTGTTGTTCGGTAAGCTATGTCTTCGGTACTTGTATGATGTCAAGTGAATTCGTTTCTTTATTAGGGGAAACGAGGCAATAACATTTCGGAGTTGTTTCGTGTTGAACAACGTTTGTGTTGATCCTTAATCACTTTAGAAGTCAATTGTAGTATTTGTAGGAGAGAATCTCATTTTTAAAAGTAATTGTTTTTCAAATCGCTCAGGTAAACGTGTAGTTCTAAATTACAGTCCTGATTTTGATTCTCCAAAATTAAAACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGTCTACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAAAATTCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGTCAGGCGCATGTAAACAGCAAACTACCGTAACCGTTCCTCTATTTTTTCATTTTTTGAATTTTCATTATTTTAAATCAATTTTTCCGATTCGCATCGAACAAAAATTATCAAAAATGAATACGATATGCGATATATGCTTAAAAATACGGTAATTCTTGCGCCTTTAAATTCTTTTGCACTTTTATATGCGCTTTTCACATGACCGTAATTAAATTCACAACTGG</canonical>
            <polymorphic>ATTGGTTTTATATGAATATGAAATATAGGACTTCAATAGATCAATAACGTGCAGACTCCGTATGAACGGATGAATGACGACTTCTGAGAGCAATGCTTGTGGTGGTGACCCCTAACACCTGGTATTTTATGGTCGGCTTGGCCTCAGAATGTCCTTTTGAATTCCTCATGCCTATGAAAAAAAGCACTCCGTTACACTTTTATGGATCTCTTTTCTTTTCTTCACATCATATACTGAACCAGTTTTCAAATTGGGGGGTCGAAACAAATGTTGTGTTGTTCGGTAAGCTATGTCTTCGGTACTTGTATGATGTCAAGTGAATTCGTTTCTTTATTAGGGGAAACGAGGCAATAACATTTCGGAGTTGTTTCGTGTTGAACAACGTTTGTGTTGATCCTTAATCACTTTAGAAGTCAATTGTAGTATTTGTAGGAGAGAATCTCATTTTTAAAAGTAATTGTTTTTCAAATCGCTCAGGTAAACGTGTAGTTCTAAATTAYAGTCCTGATTTTGATTCTCCAAAATTAAAACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGTCTACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAAAATTCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGTCAGGCGCATGTAAACAGCAAACTACCGTAACCGTTCCTCTATTTTTTCATTTTTTGAATTTTCATTATTTTAAATCAATTTTTCCGATTCGCATCGAACAAAAATTATCAAAAATGAATACGATATGCGATATATGCTTAAAAATACGGTAATTCTTGCGCCTTTAAATTCTTTTGCACTTTTATATGCGCTTTTCACATGACCGTAATTAAATTCACAACTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 153 116 113 56 35 20 6</canonical_bands>
                <polymorphic_bands>654 116 113 56 35 20 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTGTGTTGATCCTTAATCACT</pcr_primer_p1>
		<pcr_primer_p2>AATAAGCTTTTCAAAAATCACAA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GTTTGTGTTGATCCTTAATCACTTTAGAAGTCAATTGTAGTATTTGTAGGAGAGAATCTCATTTTTAAAAGTAATTGTTTTTCAAATCGCTCAGGTAAACGTGTAGTTCTAAATTACAGTCCTGATTTTGATTCTCCAAAATTAAAACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATT</canonical_amplicon>
		<polymorphic_amplicon>GTTTGTGTTGATCCTTAATCACTTTAGAAGTCAATTGTAGTATTTGTAGGAGAGAATCTCATTTTTAAAAGTAATTGTTTTTCAAATCGCTCAGGTAAACGTGTAGTTCTAAATTAYAGTCCTGATTTTGATTCTCCAAAATTAAAACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20389</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>885898</contig_pos>
        <strand>+</strand>
        <context>TGCCAGCACA[A/T]GACAATGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAGCATAATCTCAATGAGCACGGTTACGTCTGCCCAATTTGCCAGCACA</left_flank>
        <right_flank>GACAATGATTCAGGGTGATATGAGTGGCCACGTCTTCAAAACACAGGATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTTTTTTAGTTTTCAGTACAAAAACGGGCCCAAAACGAATGGACAACCATTCTGTAAAAGTGTTTAATCTAGACTTTTTTACACCCTTTACTACTTTTAAAATGATCGGAAACCTGACAGCCGAGCTCCTGTCTTCTGAAAATGATCAAAATATTCGAAAACCGTCGAAAACAAGTTTCTGCATATTCTGTTGACCGCTCCTATTGGTCAAATCCAGGACCCCTTAAGTGTGCCAATACACCATTTTCAAATGAATATCTTTGATAAAAGGATCATCATGTGTGGGCTAAATGTTATCGTCACGGAGATTAGTGACAAAAAGTAGAGAATAACAATATAAATCAATGTTATTACGCGAATTGGGGAAGTCGGGGAGTCACAATGAGATTATTCTTTCCATCCCATGACATTCATTAAAGTCACTGAACTTTTGTTTTTTCATTCCAGGAGCATAATCTCAATGAGCACGGTTACGTCTGCCCAATTTGCCAGCACAAGACAATGATTCAGGGTGATATGAGTGGCCACGTCTTCAAAACACAGGATATCTAGCATCAAAAGATTCAATTTGTAAGGGCGACAGGGTTTCAAAAAGCTTGGTAAGAAATCGCGTCCCGTATAATTTTAAACCGGACAAAACCGCTGGGACGCAATTTCTGACCAAACCTTTTGGAATCCAGTGAGGAGAGATGTGTAGTGATTTTTAAAATGAAAAACAATTTTTGTTCCAGCGTACATCGAGTCTCCTCGCTTGTGGATGCTCTTCAAAGGCGAGTGATACGTCACCACAGCTGCTTCCTTTTTCGGAAATAGCCGATGCTCCTACCACGCCTTCCCTTTGCTCCCCTTTGCTCTTCCATGCTCTTCAATTTCATTTTATTAGATAAGGCCGCATCCCGTATTCTTTTCATCGTCAAGGGGCATCCCCACTCTTGTTCTCTTTGTACCCATTCCTATTTCATTCTCTGCATTTTTCACCAGATTTCTCATTTACTCC</canonical>
            <polymorphic>TGTTTTTTTTAGTTTTCAGTACAAAAACGGGCCCAAAACGAATGGACAACCATTCTGTAAAAGTGTTTAATCTAGACTTTTTTACACCCTTTACTACTTTTAAAATGATCGGAAACCTGACAGCCGAGCTCCTGTCTTCTGAAAATGATCAAAATATTCGAAAACCGTCGAAAACAAGTTTCTGCATATTCTGTTGACCGCTCCTATTGGTCAAATCCAGGACCCCTTAAGTGTGCCAATACACCATTTTCAAATGAATATCTTTGATAAAAGGATCATCATGTGTGGGCTAAATGTTATCGTCACGGAGATTAGTGACAAAAAGTAGAGAATAACAATATAAATCAATGTTATTACGCGAATTGGGGAAGTCGGGGAGTCACAATGAGATTATTCTTTCCATCCCATGACATTCATTAAAGTCACTGAACTTTTGTTTTTTCATTCCAGGAGCATAATCTCAATGAGCACGGTTACGTCTGCCCAATTTGCCAGCACAWGACAATGATTCAGGGTGATATGAGTGGCCACGTCTTCAAAACACAGGATATCTAGCATCAAAAGATTCAATTTGTAAGGGCGACAGGGTTTCAAAAAGCTTGGTAAGAAATCGCGTCCCGTATAATTTTAAACCGGACAAAACCGCTGGGACGCAATTTCTGACCAAACCTTTTGGAATCCAGTGAGGAGAGATGTGTAGTGATTTTTAAAATGAAAAACAATTTTTGTTCCAGCGTACATCGAGTCTCCTCGCTTGTGGATGCTCTTCAAAGGCGAGTGATACGTCACCACAGCTGCTTCCTTTTTCGGAAATAGCCGATGCTCCTACCACGCCTTCCCTTTGCTCCCCTTTGCTCTTCCATGCTCTTCAATTTCATTTTATTAGATAAGGCCGCATCCCGTATTCTTTTCATCGTCAAGGGGCATCCCCACTCTTGTTCTCTTTGTACCCATTCCTATTTCATTCTCTGCATTTTTCACCAGATTTCTCATTTACTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGAGATTAGTGACAAAAAGTAG</pcr_primer_p1>
		<pcr_primer_p2>GCTAGATATCCTGTGTTTTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CGGAGATTAGTGACAAAAAGTAGAGAATAACAATATAAATCAATGTTATTACGCGAATTGGGGAAGTCGGGGAGTCACAATGAGATTATTCTTTCCATCCCATGACATTCATTAAAGTCACTGAACTTTTGTTTTTTCATTCCAGGAGCATAATCTCAATGAGCACGGTTACGTCTGCCCAATTTGCCAGCACAAGACAATGATTCAGGGTGATATGAGTGGCCACGTCTTCAAAACACAGGATATCTAGC</canonical_amplicon>
		<polymorphic_amplicon>CGGAGATTAGTGACAAAAAGTAGAGAATAACAATATAAATCAATGTTATTACGCGAATTGGGGAAGTCGGGGAGTCACAATGAGATTATTCTTTCCATCCCATGACATTCATTAAAGTCACTGAACTTTTGTTTTTTCATTCCAGGAGCATAATCTCAATGAGCACGGTTACGTCTGCCCAATTTGCCAGCACAWGACAATGATTCAGGGTGATATGAGTGGCCACGTCTTCAAAACACAGGATATCTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20390</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>885959</contig_pos>
        <strand></strand>
        <context>TCTAGCATCA[A/G]AAGRTTCAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGGGTGATATGAGTGGCCACGTCTTCAAAACACAGGATATCTAGCATCA</left_flank>
        <right_flank>AAGATTCAATTTGTAAGGGCGACAGGGTTTCAAAAAGCTTGGTAAGAAAT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGTTTAATCTAGACTTTTTTACACCCTTTACTACTTTTAAAATGATCGGAAACCTGACAGCCGAGCTCCTGTCTTCTGAAAATGATCAAAATATTCGAAAACCGTCGAAAACAAGTTTCTGCATATTCTGTTGACCGCTCCTATTGGTCAAATCCAGGACCCCTTAAGTGTGCCAATACACCATTTTCAAATGAATATCTTTGATAAAAGGATCATCATGTGTGGGCTAAATGTTATCGTCACGGAGATTAGTGACAAAAAGTAGAGAATAACAATATAAATCAATGTTATTACGCGAATTGGGGAAGTCGGGGAGTCACAATGAGATTATTCTTTCCATCCCATGACATTCATTAAAGTCACTGAACTTTTGTTTTTTCATTCCAGGAGCATAATCTCAATGAGCACGGTTACGTCTGCCCAATTTGCCAGCACAAGACAATGATTCAGGGTGATATGAGTGGCCACGTCTTCAAAACACAGGATATCTAGCATCAAAAGATTCAATTTGTAAGGGCGACAGGGTTTCAAAAAGCTTGGTAAGAAATCGCGTCCCGTATAATTTTAAACCGGACAAAACCGCTGGGACGCAATTTCTGACCAAACCTTTTGGAATCCAGTGAGGAGAGATGTGTAGTGATTTTTAAAATGAAAAACAATTTTTGTTCCAGCGTACATCGAGTCTCCTCGCTTGTGGATGCTCTTCAAAGGCGAGTGATACGTCACCACAGCTGCTTCCTTTTTCGGAAATAGCCGATGCTCCTACCACGCCTTCCCTTTGCTCCCCTTTGCTCTTCCATGCTCTTCAATTTCATTTTATTAGATAAGGCCGCATCCCGTATTCTTTTCATCGTCAAGGGGCATCCCCACTCTTGTTCTCTTTGTACCCATTCCTATTTCATTCTCTGCATTTTTCACCAGATTTCTCATTTACTCCCCTCTATCCGATCATTTCTTGTCCCAATCATCATTTCCACTTTATATCAATTTTCCTGCCT</canonical>
            <polymorphic>AGTGTTTAATCTAGACTTTTTTACACCCTTTACTACTTTTAAAATGATCGGAAACCTGACAGCCGAGCTCCTGTCTTCTGAAAATGATCAAAATATTCGAAAACCGTCGAAAACAAGTTTCTGCATATTCTGTTGACCGCTCCTATTGGTCAAATCCAGGACCCCTTAAGTGTGCCAATACACCATTTTCAAATGAATATCTTTGATAAAAGGATCATCATGTGTGGGCTAAATGTTATCGTCACGGAGATTAGTGACAAAAAGTAGAGAATAACAATATAAATCAATGTTATTACGCGAATTGGGGAAGTCGGGGAGTCACAATGAGATTATTCTTTCCATCCCATGACATTCATTAAAGTCACTGAACTTTTGTTTTTTCATTCCAGGAGCATAATCTCAATGAGCACGGTTACGTCTGCCCAATTTGCCAGCACAAGACAATGATTCAGGGTGATATGAGTGGCCACGTCTTCAAAACACAGGATATCTAGCATCARAAGATTCAATTTGTAAGGGCGACAGGGTTTCAAAAAGCTTGGTAAGAAATCGCGTCCCGTATAATTTTAAACCGGACAAAACCGCTGGGACGCAATTTCTGACCAAACCTTTTGGAATCCAGTGAGGAGAGATGTGTAGTGATTTTTAAAATGAAAAACAATTTTTGTTCCAGCGTACATCGAGTCTCCTCGCTTGTGGATGCTCTTCAAAGGCGAGTGATACGTCACCACAGCTGCTTCCTTTTTCGGAAATAGCCGATGCTCCTACCACGCCTTCCCTTTGCTCCCCTTTGCTCTTCCATGCTCTTCAATTTCATTTTATTAGATAAGGCCGCATCCCGTATTCTTTTCATCGTCAAGGGGCATCCCCACTCTTGTTCTCTTTGTACCCATTCCTATTTCATTCTCTGCATTTTTCACCAGATTTCTCATTTACTCCCCTCTATCCGATCATTTCTTGTCCCAATCATCATTTCCACTTTATATCAATTTTCCTGCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATCTCAATGAGCACGGTTA</pcr_primer_p1>
		<pcr_primer_p2>AATCACTACACATCTCTCCTCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAATCTCAATGAGCACGGTTACGTCTGCCCAATTTGCCAGCACAAGACAATGATTCAGGGTGATATGAGTGGCCACGTCTTCAAAACACAGGATATCTAGCATCAAAAGATTCAATTTGTAAGGGCGACAGGGTTTCAAAAAGCTTGGTAAGAAATCGCGTCCCGTATAATTTTAAACCGGACAAAACCGCTGGGACGCAATTTCTGACCAAACCTTTTGGAATCCAGTGAGGAGAGATGTGTAGTGATT</canonical_amplicon>
		<polymorphic_amplicon>TAATCTCAATGAGCACGGTTACGTCTGCCCAATTTGCCAGCACAAGACAATGATTCAGGGTGATATGAGTGGCCACGTCTTCAAAACACAGGATATCTAGCATCARAAGATTCAATTTGTAAGGGCGACAGGGTTTCAAAAAGCTTGGTAAGAAATCGCGTCCCGTATAATTTTAAACCGGACAAAACCGCTGGGACGCAATTTCTGACCAAACCTTTTGGAATCCAGTGAGGAGAGATGTGTAGTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20391</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>885989</contig_pos>
        <strand>+</strand>
        <context>CGACAGGGTT[C/T]CAAAAAGCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACACAGGATATCTAGCATCAAAAGATTCAATTTGTAAGGGCGACAGGGTT</left_flank>
        <right_flank>CAAAAAGCTTGGTAAGAAATCGCGTCCCGTATAATTTTAAACCGGACAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTACTTTTAAAATGATCGGAAACCTGACAGCCGAGCTCCTGTCTTCTGAAAATGATCAAAATATTCGAAAACCGTCGAAAACAAGTTTCTGCATATTCTGTTGACCGCTCCTATTGGTCAAATCCAGGACCCCTTAAGTGTGCCAATACACCATTTTCAAATGAATATCTTTGATAAAAGGATCATCATGTGTGGGCTAAATGTTATCGTCACGGAGATTAGTGACAAAAAGTAGAGAATAACAATATAAATCAATGTTATTACGCGAATTGGGGAAGTCGGGGAGTCACAATGAGATTATTCTTTCCATCCCATGACATTCATTAAAGTCACTGAACTTTTGTTTTTTCATTCCAGGAGCATAATCTCAATGAGCACGGTTACGTCTGCCCAATTTGCCAGCACAAGACAATGATTCAGGGTGATATGAGTGGCCACGTCTTCAAAACACAGGATATCTAGCATCAAAAGATTCAATTTGTAAGGGCGACAGGGTTTCAAAAAGCTTGGTAAGAAATCGCGTCCCGTATAATTTTAAACCGGACAAAACCGCTGGGACGCAATTTCTGACCAAACCTTTTGGAATCCAGTGAGGAGAGATGTGTAGTGATTTTTAAAATGAAAAACAATTTTTGTTCCAGCGTACATCGAGTCTCCTCGCTTGTGGATGCTCTTCAAAGGCGAGTGATACGTCACCACAGCTGCTTCCTTTTTCGGAAATAGCCGATGCTCCTACCACGCCTTCCCTTTGCTCCCCTTTGCTCTTCCATGCTCTTCAATTTCATTTTATTAGATAAGGCCGCATCCCGTATTCTTTTCATCGTCAAGGGGCATCCCCACTCTTGTTCTCTTTGTACCCATTCCTATTTCATTCTCTGCATTTTTCACCAGATTTCTCATTTACTCCCCTCTATCCGATCATTTCTTGTCCCAATCATCATTTCCACTTTATATCAATTTTCCTGCCTACTGTTTCTCTTAAAACGGCTACCTAGGTT</canonical>
            <polymorphic>TACTACTTTTAAAATGATCGGAAACCTGACAGCCGAGCTCCTGTCTTCTGAAAATGATCAAAATATTCGAAAACCGTCGAAAACAAGTTTCTGCATATTCTGTTGACCGCTCCTATTGGTCAAATCCAGGACCCCTTAAGTGTGCCAATACACCATTTTCAAATGAATATCTTTGATAAAAGGATCATCATGTGTGGGCTAAATGTTATCGTCACGGAGATTAGTGACAAAAAGTAGAGAATAACAATATAAATCAATGTTATTACGCGAATTGGGGAAGTCGGGGAGTCACAATGAGATTATTCTTTCCATCCCATGACATTCATTAAAGTCACTGAACTTTTGTTTTTTCATTCCAGGAGCATAATCTCAATGAGCACGGTTACGTCTGCCCAATTTGCCAGCACAAGACAATGATTCAGGGTGATATGAGTGGCCACGTCTTCAAAACACAGGATATCTAGCATCAAAAGATTCAATTTGTAAGGGCGACAGGGTTYCAAAAAGCTTGGTAAGAAATCGCGTCCCGTATAATTTTAAACCGGACAAAACCGCTGGGACGCAATTTCTGACCAAACCTTTTGGAATCCAGTGAGGAGAGATGTGTAGTGATTTTTAAAATGAAAAACAATTTTTGTTCCAGCGTACATCGAGTCTCCTCGCTTGTGGATGCTCTTCAAAGGCGAGTGATACGTCACCACAGCTGCTTCCTTTTTCGGAAATAGCCGATGCTCCTACCACGCCTTCCCTTTGCTCCCCTTTGCTCTTCCATGCTCTTCAATTTCATTTTATTAGATAAGGCCGCATCCCGTATTCTTTTCATCGTCAAGGGGCATCCCCACTCTTGTTCTCTTTGTACCCATTCCTATTTCATTCTCTGCATTTTTCACCAGATTTCTCATTTACTCCCCTCTATCCGATCATTTCTTGTCCCAATCATCATTTCCACTTTATATCAATTTTCCTGCCTACTGTTTCTCTTAAAACGGCTACCTAGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATCTCAATGAGCACGGTTA</pcr_primer_p1>
		<pcr_primer_p2>AATCACTACACATCTCTCCTCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAATCTCAATGAGCACGGTTACGTCTGCCCAATTTGCCAGCACAAGACAATGATTCAGGGTGATATGAGTGGCCACGTCTTCAAAACACAGGATATCTAGCATCAAAAGATTCAATTTGTAAGGGCGACAGGGTTTCAAAAAGCTTGGTAAGAAATCGCGTCCCGTATAATTTTAAACCGGACAAAACCGCTGGGACGCAATTTCTGACCAAACCTTTTGGAATCCAGTGAGGAGAGATGTGTAGTGATT</canonical_amplicon>
		<polymorphic_amplicon>TAATCTCAATGAGCACGGTTACGTCTGCCCAATTTGCCAGCACAAGACAATGATTCAGGGTGATATGAGTGGCCACGTCTTCAAAACACAGGATATCTAGCATCAAAAGATTCAATTTGTAAGGGCGACAGGGTTYCAAAAAGCTTGGTAAGAAATCGCGTCCCGTATAATTTTAAACCGGACAAAACCGCTGGGACGCAATTTCTGACCAAACCTTTTGGAATCCAGTGAGGAGAGATGTGTAGTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20392</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>886003</contig_pos>
        <strand>+</strand>
        <context>AAAGCTTGGT[A/C]AGAAATCGCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCATCAAAAGATTCAATTTGTAAGGGCGACAGGGTTTCAAAAAGCTTGGT</left_flank>
        <right_flank>AGAAATCGCGTCCCGTATAATTTTAAACCGGACAAAACCGCTGGGACGCA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATCGGAAACCTGACAGCCGAGCTCCTGTCTTCTGAAAATGATCAAAATATTCGAAAACCGTCGAAAACAAGTTTCTGCATATTCTGTTGACCGCTCCTATTGGTCAAATCCAGGACCCCTTAAGTGTGCCAATACACCATTTTCAAATGAATATCTTTGATAAAAGGATCATCATGTGTGGGCTAAATGTTATCGTCACGGAGATTAGTGACAAAAAGTAGAGAATAACAATATAAATCAATGTTATTACGCGAATTGGGGAAGTCGGGGAGTCACAATGAGATTATTCTTTCCATCCCATGACATTCATTAAAGTCACTGAACTTTTGTTTTTTCATTCCAGGAGCATAATCTCAATGAGCACGGTTACGTCTGCCCAATTTGCCAGCACAAGACAATGATTCAGGGTGATATGAGTGGCCACGTCTTCAAAACACAGGATATCTAGCATCAAAAGATTCAATTTGTAAGGGCGACAGGGTTTCAAAAAGCTTGGTAAGAAATCGCGTCCCGTATAATTTTAAACCGGACAAAACCGCTGGGACGCAATTTCTGACCAAACCTTTTGGAATCCAGTGAGGAGAGATGTGTAGTGATTTTTAAAATGAAAAACAATTTTTGTTCCAGCGTACATCGAGTCTCCTCGCTTGTGGATGCTCTTCAAAGGCGAGTGATACGTCACCACAGCTGCTTCCTTTTTCGGAAATAGCCGATGCTCCTACCACGCCTTCCCTTTGCTCCCCTTTGCTCTTCCATGCTCTTCAATTTCATTTTATTAGATAAGGCCGCATCCCGTATTCTTTTCATCGTCAAGGGGCATCCCCACTCTTGTTCTCTTTGTACCCATTCCTATTTCATTCTCTGCATTTTTCACCAGATTTCTCATTTACTCCCCTCTATCCGATCATTTCTTGTCCCAATCATCATTTCCACTTTATATCAATTTTCCTGCCTACTGTTTCTCTTAAAACGGCTACCTAGGTTGATATTTCAGGCAA</canonical>
            <polymorphic>TGATCGGAAACCTGACAGCCGAGCTCCTGTCTTCTGAAAATGATCAAAATATTCGAAAACCGTCGAAAACAAGTTTCTGCATATTCTGTTGACCGCTCCTATTGGTCAAATCCAGGACCCCTTAAGTGTGCCAATACACCATTTTCAAATGAATATCTTTGATAAAAGGATCATCATGTGTGGGCTAAATGTTATCGTCACGGAGATTAGTGACAAAAAGTAGAGAATAACAATATAAATCAATGTTATTACGCGAATTGGGGAAGTCGGGGAGTCACAATGAGATTATTCTTTCCATCCCATGACATTCATTAAAGTCACTGAACTTTTGTTTTTTCATTCCAGGAGCATAATCTCAATGAGCACGGTTACGTCTGCCCAATTTGCCAGCACAAGACAATGATTCAGGGTGATATGAGTGGCCACGTCTTCAAAACACAGGATATCTAGCATCAAAAGATTCAATTTGTAAGGGCGACAGGGTTTCAAAAAGCTTGGTMAGAAATCGCGTCCCGTATAATTTTAAACCGGACAAAACCGCTGGGACGCAATTTCTGACCAAACCTTTTGGAATCCAGTGAGGAGAGATGTGTAGTGATTTTTAAAATGAAAAACAATTTTTGTTCCAGCGTACATCGAGTCTCCTCGCTTGTGGATGCTCTTCAAAGGCGAGTGATACGTCACCACAGCTGCTTCCTTTTTCGGAAATAGCCGATGCTCCTACCACGCCTTCCCTTTGCTCCCCTTTGCTCTTCCATGCTCTTCAATTTCATTTTATTAGATAAGGCCGCATCCCGTATTCTTTTCATCGTCAAGGGGCATCCCCACTCTTGTTCTCTTTGTACCCATTCCTATTTCATTCTCTGCATTTTTCACCAGATTTCTCATTTACTCCCCTCTATCCGATCATTTCTTGTCCCAATCATCATTTCCACTTTATATCAATTTTCCTGCCTACTGTTTCTCTTAAAACGGCTACCTAGGTTGATATTTCAGGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATCTCAATGAGCACGGTTA</pcr_primer_p1>
		<pcr_primer_p2>AATCACTACACATCTCTCCTCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAATCTCAATGAGCACGGTTACGTCTGCCCAATTTGCCAGCACAAGACAATGATTCAGGGTGATATGAGTGGCCACGTCTTCAAAACACAGGATATCTAGCATCAAAAGATTCAATTTGTAAGGGCGACAGGGTTTCAAAAAGCTTGGTAAGAAATCGCGTCCCGTATAATTTTAAACCGGACAAAACCGCTGGGACGCAATTTCTGACCAAACCTTTTGGAATCCAGTGAGGAGAGATGTGTAGTGATT</canonical_amplicon>
		<polymorphic_amplicon>TAATCTCAATGAGCACGGTTACGTCTGCCCAATTTGCCAGCACAAGACAATGATTCAGGGTGATATGAGTGGCCACGTCTTCAAAACACAGGATATCTAGCATCAAAAGATTCAATTTGTAAGGGCGACAGGGTTTCAAAAAGCTTGGTMAGAAATCGCGTCCCGTATAATTTTAAACCGGACAAAACCGCTGGGACGCAATTTCTGACCAAACCTTTTGGAATCCAGTGAGGAGAGATGTGTAGTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20393</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>886063</contig_pos>
        <strand>+</strand>
        <context>AATTTCTGAC[C/T]AAACCTTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCCCGTATAATTTTAAACCGGACAAAACCGCTGGGACGCAATTTCTGAC</left_flank>
        <right_flank>AAACCTTTTGGAATCCAGTGAGGAGAGATGTGTAGTGATTTTTAAAATGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTCGAAAACAAGTTTCTGCATATTCTGTTGACCGCTCCTATTGGTCAAATCCAGGACCCCTTAAGTGTGCCAATACACCATTTTCAAATGAATATCTTTGATAAAAGGATCATCATGTGTGGGCTAAATGTTATCGTCACGGAGATTAGTGACAAAAAGTAGAGAATAACAATATAAATCAATGTTATTACGCGAATTGGGGAAGTCGGGGAGTCACAATGAGATTATTCTTTCCATCCCATGACATTCATTAAAGTCACTGAACTTTTGTTTTTTCATTCCAGGAGCATAATCTCAATGAGCACGGTTACGTCTGCCCAATTTGCCAGCACAAGACAATGATTCAGGGTGATATGAGTGGCCACGTCTTCAAAACACAGGATATCTAGCATCAAAAGATTCAATTTGTAAGGGCGACAGGGTTTCAAAAAGCTTGGTAAGAAATCGCGTCCCGTATAATTTTAAACCGGACAAAACCGCTGGGACGCAATTTCTGACCAAACCTTTTGGAATCCAGTGAGGAGAGATGTGTAGTGATTTTTAAAATGAAAAACAATTTTTGTTCCAGCGTACATCGAGTCTCCTCGCTTGTGGATGCTCTTCAAAGGCGAGTGATACGTCACCACAGCTGCTTCCTTTTTCGGAAATAGCCGATGCTCCTACCACGCCTTCCCTTTGCTCCCCTTTGCTCTTCCATGCTCTTCAATTTCATTTTATTAGATAAGGCCGCATCCCGTATTCTTTTCATCGTCAAGGGGCATCCCCACTCTTGTTCTCTTTGTACCCATTCCTATTTCATTCTCTGCATTTTTCACCAGATTTCTCATTTACTCCCCTCTATCCGATCATTTCTTGTCCCAATCATCATTTCCACTTTATATCAATTTTCCTGCCTACTGTTTCTCTTAAAACGGCTACCTAGGTTGATATTTCAGGCAATAAATCATTTTAGGGTAAAATGAAGATGATGGACATCATCATTGTTCCCATGAGAATCTT</canonical>
            <polymorphic>CGTCGAAAACAAGTTTCTGCATATTCTGTTGACCGCTCCTATTGGTCAAATCCAGGACCCCTTAAGTGTGCCAATACACCATTTTCAAATGAATATCTTTGATAAAAGGATCATCATGTGTGGGCTAAATGTTATCGTCACGGAGATTAGTGACAAAAAGTAGAGAATAACAATATAAATCAATGTTATTACGCGAATTGGGGAAGTCGGGGAGTCACAATGAGATTATTCTTTCCATCCCATGACATTCATTAAAGTCACTGAACTTTTGTTTTTTCATTCCAGGAGCATAATCTCAATGAGCACGGTTACGTCTGCCCAATTTGCCAGCACAAGACAATGATTCAGGGTGATATGAGTGGCCACGTCTTCAAAACACAGGATATCTAGCATCAAAAGATTCAATTTGTAAGGGCGACAGGGTTTCAAAAAGCTTGGTAAGAAATCGCGTCCCGTATAATTTTAAACCGGACAAAACCGCTGGGACGCAATTTCTGACYAAACCTTTTGGAATCCAGTGAGGAGAGATGTGTAGTGATTTTTAAAATGAAAAACAATTTTTGTTCCAGCGTACATCGAGTCTCCTCGCTTGTGGATGCTCTTCAAAGGCGAGTGATACGTCACCACAGCTGCTTCCTTTTTCGGAAATAGCCGATGCTCCTACCACGCCTTCCCTTTGCTCCCCTTTGCTCTTCCATGCTCTTCAATTTCATTTTATTAGATAAGGCCGCATCCCGTATTCTTTTCATCGTCAAGGGGCATCCCCACTCTTGTTCTCTTTGTACCCATTCCTATTTCATTCTCTGCATTTTTCACCAGATTTCTCATTTACTCCCCTCTATCCGATCATTTCTTGTCCCAATCATCATTTCCACTTTATATCAATTTTCCTGCCTACTGTTTCTCTTAAAACGGCTACCTAGGTTGATATTTCAGGCAATAAATCATTTTAGGGTAAAATGAAGATGATGGACATCATCATTGTTCCCATGAGAATCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCAAAACACAGGATATCTAGC</pcr_primer_p1>
		<pcr_primer_p2>TATCACTCGCCTTTGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCAAAACACAGGATATCTAGCATCAAAAGATTCAATTTGTAAGGGCGACAGGGTTTCAAAAAGCTTGGTAAGAAATCGCGTCCCGTATAATTTTAAACCGGACAAAACCGCTGGGACGCAATTTCTGACCAAACCTTTTGGAATCCAGTGAGGAGAGATGTGTAGTGATTTTTAAAATGAAAAACAATTTTTGTTCCAGCGTACATCGAGTCTCCTCGCTTGTGGATGCTCTTCAAAGGCGAGTGATA</canonical_amplicon>
		<polymorphic_amplicon>CTTCAAAACACAGGATATCTAGCATCAAAAGATTCAATTTGTAAGGGCGACAGGGTTTCAAAAAGCTTGGTAAGAAATCGCGTCCCGTATAATTTTAAACCGGACAAAACCGCTGGGACGCAATTTCTGACYAAACCTTTTGGAATCCAGTGAGGAGAGATGTGTAGTGATTTTTAAAATGAAAAACAATTTTTGTTCCAGCGTACATCGAGTCTCCTCGCTTGTGGATGCTCTTCAAAGGCGAGTGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20394</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>886192</contig_pos>
        <strand>+</strand>
        <context>CGTCACCACA[G/T]CTGCTTCCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGTCTCCTCGCTTGTGGATGCTCTTCAAAGGCGAGTGATACGTCACCACA</left_flank>
        <right_flank>CTGCTTCCTTTTTCGGAAATAGCCGATGCTCCTACCACGCCTTCCCTTTG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTATCGTCACGGAGATTAGTGACAAAAAGTAGAGAATAACAATATAAATCAATGTTATTACGCGAATTGGGGAAGTCGGGGAGTCACAATGAGATTATTCTTTCCATCCCATGACATTCATTAAAGTCACTGAACTTTTGTTTTTTCATTCCAGGAGCATAATCTCAATGAGCACGGTTACGTCTGCCCAATTTGCCAGCACAAGACAATGATTCAGGGTGATATGAGTGGCCACGTCTTCAAAACACAGGATATCTAGCATCAAAAGATTCAATTTGTAAGGGCGACAGGGTTTCAAAAAGCTTGGTAAGAAATCGCGTCCCGTATAATTTTAAACCGGACAAAACCGCTGGGACGCAATTTCTGACCAAACCTTTTGGAATCCAGTGAGGAGAGATGTGTAGTGATTTTTAAAATGAAAAACAATTTTTGTTCCAGCGTACATCGAGTCTCCTCGCTTGTGGATGCTCTTCAAAGGCGAGTGATACGTCACCACAGCTGCTTCCTTTTTCGGAAATAGCCGATGCTCCTACCACGCCTTCCCTTTGCTCCCCTTTGCTCTTCCATGCTCTTCAATTTCATTTTATTAGATAAGGCCGCATCCCGTATTCTTTTCATCGTCAAGGGGCATCCCCACTCTTGTTCTCTTTGTACCCATTCCTATTTCATTCTCTGCATTTTTCACCAGATTTCTCATTTACTCCCCTCTATCCGATCATTTCTTGTCCCAATCATCATTTCCACTTTATATCAATTTTCCTGCCTACTGTTTCTCTTAAAACGGCTACCTAGGTTGATATTTCAGGCAATAAATCATTTTAGGGTAAAATGAAGATGATGGACATCATCATTGTTCCCATGAGAATCTTTATCACGAGAGAGCGACTAGAAAGCAATAAATCGTACATGACCACAATCACACCGCAGCTGTATACAAAAAAAAATTGCCCCTGGGAAGAAGCGGGGGCACGCATGTGTGATTCAATGAACCATGGAGG</canonical>
            <polymorphic>TGTTATCGTCACGGAGATTAGTGACAAAAAGTAGAGAATAACAATATAAATCAATGTTATTACGCGAATTGGGGAAGTCGGGGAGTCACAATGAGATTATTCTTTCCATCCCATGACATTCATTAAAGTCACTGAACTTTTGTTTTTTCATTCCAGGAGCATAATCTCAATGAGCACGGTTACGTCTGCCCAATTTGCCAGCACAAGACAATGATTCAGGGTGATATGAGTGGCCACGTCTTCAAAACACAGGATATCTAGCATCAAAAGATTCAATTTGTAAGGGCGACAGGGTTTCAAAAAGCTTGGTAAGAAATCGCGTCCCGTATAATTTTAAACCGGACAAAACCGCTGGGACGCAATTTCTGACCAAACCTTTTGGAATCCAGTGAGGAGAGATGTGTAGTGATTTTTAAAATGAAAAACAATTTTTGTTCCAGCGTACATCGAGTCTCCTCGCTTGTGGATGCTCTTCAAAGGCGAGTGATACGTCACCACAKCTGCTTCCTTTTTCGGAAATAGCCGATGCTCCTACCACGCCTTCCCTTTGCTCCCCTTTGCTCTTCCATGCTCTTCAATTTCATTTTATTAGATAAGGCCGCATCCCGTATTCTTTTCATCGTCAAGGGGCATCCCCACTCTTGTTCTCTTTGTACCCATTCCTATTTCATTCTCTGCATTTTTCACCAGATTTCTCATTTACTCCCCTCTATCCGATCATTTCTTGTCCCAATCATCATTTCCACTTTATATCAATTTTCCTGCCTACTGTTTCTCTTAAAACGGCTACCTAGGTTGATATTTCAGGCAATAAATCATTTTAGGGTAAAATGAAGATGATGGACATCATCATTGTTCCCATGAGAATCTTTATCACGAGAGAGCGACTAGAAAGCAATAAATCGTACATGACCACAATCACACCGCAGCTGTATACAAAAAAAAATTGCCCCTGGGAAGAAGCGGGGGCACGCATGTGTGATTCAATGAACCATGGAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>429 304 196 71</canonical_bands>
                <polymorphic_bands>625 304 71</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>503 328 98 71</canonical_bands>
                <polymorphic_bands>601 328 71</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>233 196 188 143 76 71 71 22</canonical_bands>
                <polymorphic_bands>233 218 188 143 76 71 71</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>429 351 149 71</canonical_bands>
                <polymorphic_bands>578 351 71</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>500 429 71</canonical_bands>
                <polymorphic_bands>929 71</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>500 426 74</canonical_bands>
                <polymorphic_bands>926 74</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGAGGAGAGATGTGTAGTGATT</pcr_primer_p1>
		<pcr_primer_p2>CTTGACGATGAAAAGAATACG</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GTGAGGAGAGATGTGTAGTGATTTTTAAAATGAAAAACAATTTTTGTTCCAGCGTACATCGAGTCTCCTCGCTTGTGGATGCTCTTCAAAGGCGAGTGATACGTCACCACAGCTGCTTCCTTTTTCGGAAATAGCCGATGCTCCTACCACGCCTTCCCTTTGCTCCCCTTTGCTCTTCCATGCTCTTCAATTTCATTTTATTAGATAAGGCCGCATCCCGTATTCTTTTCATCGTCAAG</canonical_amplicon>
		<polymorphic_amplicon>GTGAGGAGAGATGTGTAGTGATTTTTAAAATGAAAAACAATTTTTGTTCCAGCGTACATCGAGTCTCCTCGCTTGTGGATGCTCTTCAAAGGCGAGTGATACGTCACCACAKCTGCTTCCTTTTTCGGAAATAGCCGATGCTCCTACCACGCCTTCCCTTTGCTCCCCTTTGCTCTTCCATGCTCTTCAATTTCATTTTATTAGATAAGGCCGCATCCCGTATTCTTTTCATCGTCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20395</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>887728</contig_pos>
        <strand>+</strand>
        <context>AGAAGAGTTC[G/T]KTTTTTTGCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCCGATAAATCAAGCCGGCGGGACACTTGTGGGATGCTTGAGAAGAGTTC</left_flank>
        <right_flank>TTTTTTTGCTCTTTTCCGTCCGTTCAGGAATTTTTTCGCCAGCTTCCTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACGAGCGTTAGAGTGAGAGTGTCTGAGAGCGCGTGTATGTATGTATATGTGCGTCTGGTGGTAAAACTCTATGCACTCTCTGTTTTAACTTACGACACTATCTTGTCGCATTCAGGCGCCACACCAACTCTGCAATGGCTGCGGCTGCGCCAAAGCGGCGTATGGGCCTTGAAAAGGTGGGTGTTCTGTTTTTTTTCTTGTTGTTGTTGTTGTTGTCCTTCTCTTCGTGCTCCTTCTCTCTCATCAATCTTTCTACTCTTGGGGGCTCTGATTCTGCAGCATTGCCGCTCTAATTAGATGACTCATTTGGTTTAATGGGATTGCTTAGAAGAAATGAGCTTTGAGACTTGGTACTTTTTGAGTACATTGTAAAATTTAAAGAACACTTTTGAGACTTTCATGGGAACCCGTTTCATCTTAGATTAGAAATCTTTTCTGGGGATACGTCCCGATAAATCAAGCCGGCGGGACACTTGTGGGATGCTTGAGAAGAGTTCGTTTTTTTGCTCTTTTCCGTCCGTTCAGGAATTTTTTCGCCAGCTTCCTCCTTTTTTTCTCATCCATTTTCCCATTTTTCTGAGAGTTTTCGATTACCTCTTCCTCACCCCGCTCCTTCTCTCACTCCCTCTTTCTCTTTATCCAGAGAATATTTGAAATTGAAGTTTGGGAAAAAAAGTTTTAGAAGCAGAAGAGAGCATTTTTGAGATCAAGAGTTTGAGAGTGGAGACTACATATACTAGTTGGTGGCAATTTAATTTTCCGTCGCTTAGTTTGAGGAAACAGATGCCAAACGTTTCTTAAACGATTATTTATGCCTGAGTGATCAATCGCTTTGCCGCGATTAAAACCTCATGTGTTTTCAGTTTTTGTTGGACTGCGTGATTTTCGCCTCGAAATTTTTTTCTGCCTCCTCTTCTTCCAAGGAACTCGGCTTCCGATGCGATTATGTACTTACTTGTTGCATAGAAAATTTACTGGCTATTCTGACACACACACCC</canonical>
            <polymorphic>CGACGAGCGTTAGAGTGAGAGTGTCTGAGAGCGCGTGTATGTATGTATATGTGCGTCTGGTGGTAAAACTCTATGCACTCTCTGTTTTAACTTACGACACTATCTTGTCGCATTCAGGCGCCACACCAACTCTGCAATGGCTGCGGCTGCGCCAAAGCGGCGTATGGGCCTTGAAAAGGTGGGTGTTCTGTTTTTTTTCTTGTTGTTGTTGTTGTTGTCCTTCTCTTCGTGCTCCTTCTCTCTCATCAATCTTTCTACTCTTGGGGGCTCTGATTCTGCAGCATTGCCGCTCTAATTAGATGACTCATTTGGTTTAATGGGATTGCTTAGAAGAAATGAGCTTTGAGACTTGGTACTTTTTGAGTACATTGTAAAATTTAAAGAACACTTTTGAGACTTTCATGGGAACCCGTTTCATCTTAGATTAGAAATCTTTTCTGGGGATACGTCCCGATAAATCAAGCCGGCGGGACACTTGTGGGATGCTTGAGAAGAGTTCKTTTTTTTGCTCTTTTCCGTCCGTTCAGGAATTTTTTCGCCAGCTTCCTCCTTTTTTTCTCATCCATTTTCCCATTTTTCTGAGAGTTTTCGATTACCTCTTCCTCACCCCGCTCCTTCTCTCACTCCCTCTTTCTCTTTATCCAGAGAATATTTGAAATTGAAGTTTGGGAAAAAAAGTTTTAGAAGCAGAAGAGAGCATTTTTGAGATCAAGAGTTTGAGAGTGGAGACTACATATACTAGTTGGTGGCAATTTAATTTTCCGTCGCTTAGTTTGAGGAAACAGATGCCAAACGTTTCTTAAACGATTATTTATGCCTGAGTGATCAATCGCTTTGCCGCGATTAAAACCTCATGTGTTTTCAGTTTTTGTTGGACTGCGTGATTTTCGCCTCGAAATTTTTTTCTGCCTCCTCTTCTTCCAAGGAACTCGGCTTCCGATGCGATTATGTACTTACTTGTTGCATAGAAAATTTACTGGCTATTCTGACACACACACCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTTTGAGACTTGGTACTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTCTCAGAAAAATGGGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGCTTTGAGACTTGGTACTTTTTGAGTACATTGTAAAATTTAAAGAACACTTTTGAGACTTTCATGGGAACCCGTTTCATCTTAGATTAGAAATCTTTTCTGGGGATACGTCCCGATAAATCAAGCCGGCGGGACACTTGTGGGATGCTTGAGAAGAGTTCGTTTTTTTGCTCTTTTCCGTCCGTTCAGGAATTTTTTCGCCAGCTTCCTCCTTTTTTTCTCATCCATTTTCCCATTTTTCTGAGAGT</canonical_amplicon>
		<polymorphic_amplicon>AGCTTTGAGACTTGGTACTTTTTGAGTACATTGTAAAATTTAAAGAACACTTTTGAGACTTTCATGGGAACCCGTTTCATCTTAGATTAGAAATCTTTTCTGGGGATACGTCCCGATAAATCAAGCCGGCGGGACACTTGTGGGATGCTTGAGAAGAGTTCKTTTTTTTGCTCTTTTCCGTCCGTTCAGGAATTTTTTCGCCAGCTTCCTCCTTTTTTTCTCATCCATTTTCCCATTTTTCTGAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20396</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>887766</contig_pos>
        <strand></strand>
        <context>GAATTTTTTC[G/T]CCAGCTTCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAGAAGAGTTCGTTTTTTTGCTCTTTTCCGTCCGTTCAGGAATTTTTTC</left_flank>
        <right_flank>CCAGCTTCCTCCTTTTTTTCTCATCCATTTTCCCATTTTTCTGAGAGTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTATGTATATGTGCGTCTGGTGGTAAAACTCTATGCACTCTCTGTTTTAACTTACGACACTATCTTGTCGCATTCAGGCGCCACACCAACTCTGCAATGGCTGCGGCTGCGCCAAAGCGGCGTATGGGCCTTGAAAAGGTGGGTGTTCTGTTTTTTTTCTTGTTGTTGTTGTTGTTGTCCTTCTCTTCGTGCTCCTTCTCTCTCATCAATCTTTCTACTCTTGGGGGCTCTGATTCTGCAGCATTGCCGCTCTAATTAGATGACTCATTTGGTTTAATGGGATTGCTTAGAAGAAATGAGCTTTGAGACTTGGTACTTTTTGAGTACATTGTAAAATTTAAAGAACACTTTTGAGACTTTCATGGGAACCCGTTTCATCTTAGATTAGAAATCTTTTCTGGGGATACGTCCCGATAAATCAAGCCGGCGGGACACTTGTGGGATGCTTGAGAAGAGTTCGTTTTTTTGCTCTTTTCCGTCCGTTCAGGAATTTTTTCGCCAGCTTCCTCCTTTTTTTCTCATCCATTTTCCCATTTTTCTGAGAGTTTTCGATTACCTCTTCCTCACCCCGCTCCTTCTCTCACTCCCTCTTTCTCTTTATCCAGAGAATATTTGAAATTGAAGTTTGGGAAAAAAAGTTTTAGAAGCAGAAGAGAGCATTTTTGAGATCAAGAGTTTGAGAGTGGAGACTACATATACTAGTTGGTGGCAATTTAATTTTCCGTCGCTTAGTTTGAGGAAACAGATGCCAAACGTTTCTTAAACGATTATTTATGCCTGAGTGATCAATCGCTTTGCCGCGATTAAAACCTCATGTGTTTTCAGTTTTTGTTGGACTGCGTGATTTTCGCCTCGAAATTTTTTTCTGCCTCCTCTTCTTCCAAGGAACTCGGCTTCCGATGCGATTATGTACTTACTTGTTGCATAGAAAATTTACTGGCTATTCTGACACACACACCCTCTCCTCGTGCATTTTAGCATTTTTATTGGCACAATTC</canonical>
            <polymorphic>ATGTATGTATATGTGCGTCTGGTGGTAAAACTCTATGCACTCTCTGTTTTAACTTACGACACTATCTTGTCGCATTCAGGCGCCACACCAACTCTGCAATGGCTGCGGCTGCGCCAAAGCGGCGTATGGGCCTTGAAAAGGTGGGTGTTCTGTTTTTTTTCTTGTTGTTGTTGTTGTTGTCCTTCTCTTCGTGCTCCTTCTCTCTCATCAATCTTTCTACTCTTGGGGGCTCTGATTCTGCAGCATTGCCGCTCTAATTAGATGACTCATTTGGTTTAATGGGATTGCTTAGAAGAAATGAGCTTTGAGACTTGGTACTTTTTGAGTACATTGTAAAATTTAAAGAACACTTTTGAGACTTTCATGGGAACCCGTTTCATCTTAGATTAGAAATCTTTTCTGGGGATACGTCCCGATAAATCAAGCCGGCGGGACACTTGTGGGATGCTTGAGAAGAGTTCGTTTTTTTGCTCTTTTCCGTCCGTTCAGGAATTTTTTCKCCAGCTTCCTCCTTTTTTTCTCATCCATTTTCCCATTTTTCTGAGAGTTTTCGATTACCTCTTCCTCACCCCGCTCCTTCTCTCACTCCCTCTTTCTCTTTATCCAGAGAATATTTGAAATTGAAGTTTGGGAAAAAAAGTTTTAGAAGCAGAAGAGAGCATTTTTGAGATCAAGAGTTTGAGAGTGGAGACTACATATACTAGTTGGTGGCAATTTAATTTTCCGTCGCTTAGTTTGAGGAAACAGATGCCAAACGTTTCTTAAACGATTATTTATGCCTGAGTGATCAATCGCTTTGCCGCGATTAAAACCTCATGTGTTTTCAGTTTTTGTTGGACTGCGTGATTTTCGCCTCGAAATTTTTTTCTGCCTCCTCTTCTTCCAAGGAACTCGGCTTCCGATGCGATTATGTACTTACTTGTTGCATAGAAAATTTACTGGCTATTCTGACACACACACCCTCTCCTCGTGCATTTTAGCATTTTTATTGGCACAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 427 75</canonical_bands>
                <polymorphic_bands>573 427</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTAGAAATCTTTTCTGGGGATA</pcr_primer_p1>
		<pcr_primer_p2>CAAACTTCAATTTCAAATATTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATTAGAAATCTTTTCTGGGGATACGTCCCGATAAATCAAGCCGGCGGGACACTTGTGGGATGCTTGAGAAGAGTTCGTTTTTTTGCTCTTTTCCGTCCGTTCAGGAATTTTTTCGCCAGCTTCCTCCTTTTTTTCTCATCCATTTTCCCATTTTTCTGAGAGTTTTCGATTACCTCTTCCTCACCCCGCTCCTTCTCTCACTCCCTCTTTCTCTTTATCCAGAGAATATTTGAAATTGAAGTTTG</canonical_amplicon>
		<polymorphic_amplicon>ATTAGAAATCTTTTCTGGGGATACGTCCCGATAAATCAAGCCGGCGGGACACTTGTGGGATGCTTGAGAAGAGTTCGTTTTTTTGCTCTTTTCCGTCCGTTCAGGAATTTTTTCKCCAGCTTCCTCCTTTTTTTCTCATCCATTTTCCCATTTTTCTGAGAGTTTTCGATTACCTCTTCCTCACCCCGCTCCTTCTCTCACTCCCTCTTTCTCTTTATCCAGAGAATATTTGAAATTGAAGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20397</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>887819</contig_pos>
        <strand>+</strand>
        <context>GAGAGTTTTC[A/G]ATTACCTCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCTTCCTCCTTTTTTTCTCATCCATTTTCCCATTTTTCTGAGAGTTTTC</left_flank>
        <right_flank>ATTACCTCTTCCTCACCCCGCTCCTTCTCTCACTCCCTCTTTCTCTTTAT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACGACACTATCTTGTCGCATTCAGGCGCCACACCAACTCTGCAATGGCTGCGGCTGCGCCAAAGCGGCGTATGGGCCTTGAAAAGGTGGGTGTTCTGTTTTTTTTCTTGTTGTTGTTGTTGTTGTCCTTCTCTTCGTGCTCCTTCTCTCTCATCAATCTTTCTACTCTTGGGGGCTCTGATTCTGCAGCATTGCCGCTCTAATTAGATGACTCATTTGGTTTAATGGGATTGCTTAGAAGAAATGAGCTTTGAGACTTGGTACTTTTTGAGTACATTGTAAAATTTAAAGAACACTTTTGAGACTTTCATGGGAACCCGTTTCATCTTAGATTAGAAATCTTTTCTGGGGATACGTCCCGATAAATCAAGCCGGCGGGACACTTGTGGGATGCTTGAGAAGAGTTCGTTTTTTTGCTCTTTTCCGTCCGTTCAGGAATTTTTTCGCCAGCTTCCTCCTTTTTTTCTCATCCATTTTCCCATTTTTCTGAGAGTTTTCGATTACCTCTTCCTCACCCCGCTCCTTCTCTCACTCCCTCTTTCTCTTTATCCAGAGAATATTTGAAATTGAAGTTTGGGAAAAAAAGTTTTAGAAGCAGAAGAGAGCATTTTTGAGATCAAGAGTTTGAGAGTGGAGACTACATATACTAGTTGGTGGCAATTTAATTTTCCGTCGCTTAGTTTGAGGAAACAGATGCCAAACGTTTCTTAAACGATTATTTATGCCTGAGTGATCAATCGCTTTGCCGCGATTAAAACCTCATGTGTTTTCAGTTTTTGTTGGACTGCGTGATTTTCGCCTCGAAATTTTTTTCTGCCTCCTCTTCTTCCAAGGAACTCGGCTTCCGATGCGATTATGTACTTACTTGTTGCATAGAAAATTTACTGGCTATTCTGACACACACACCCTCTCCTCGTGCATTTTAGCATTTTTATTGGCACAATTCTCCTCTCTCAGATGTTGTAGATCTCATTAGAAAAAGGAAAGAGCAGCAAAAAG</canonical>
            <polymorphic>TTACGACACTATCTTGTCGCATTCAGGCGCCACACCAACTCTGCAATGGCTGCGGCTGCGCCAAAGCGGCGTATGGGCCTTGAAAAGGTGGGTGTTCTGTTTTTTTTCTTGTTGTTGTTGTTGTTGTCCTTCTCTTCGTGCTCCTTCTCTCTCATCAATCTTTCTACTCTTGGGGGCTCTGATTCTGCAGCATTGCCGCTCTAATTAGATGACTCATTTGGTTTAATGGGATTGCTTAGAAGAAATGAGCTTTGAGACTTGGTACTTTTTGAGTACATTGTAAAATTTAAAGAACACTTTTGAGACTTTCATGGGAACCCGTTTCATCTTAGATTAGAAATCTTTTCTGGGGATACGTCCCGATAAATCAAGCCGGCGGGACACTTGTGGGATGCTTGAGAAGAGTTCGTTTTTTTGCTCTTTTCCGTCCGTTCAGGAATTTTTTCGCCAGCTTCCTCCTTTTTTTCTCATCCATTTTCCCATTTTTCTGAGAGTTTTCRATTACCTCTTCCTCACCCCGCTCCTTCTCTCACTCCCTCTTTCTCTTTATCCAGAGAATATTTGAAATTGAAGTTTGGGAAAAAAAGTTTTAGAAGCAGAAGAGAGCATTTTTGAGATCAAGAGTTTGAGAGTGGAGACTACATATACTAGTTGGTGGCAATTTAATTTTCCGTCGCTTAGTTTGAGGAAACAGATGCCAAACGTTTCTTAAACGATTATTTATGCCTGAGTGATCAATCGCTTTGCCGCGATTAAAACCTCATGTGTTTTCAGTTTTTGTTGGACTGCGTGATTTTCGCCTCGAAATTTTTTTCTGCCTCCTCTTCTTCCAAGGAACTCGGCTTCCGATGCGATTATGTACTTACTTGTTGCATAGAAAATTTACTGGCTATTCTGACACACACACCCTCTCCTCGTGCATTTTAGCATTTTTATTGGCACAATTCTCCTCTCTCAGATGTTGTAGATCTCATTAGAAAAAGGAAAGAGCAGCAAAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 304 197</canonical_bands>
                <polymorphic_bands>803 197</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTAGAAATCTTTTCTGGGGATA</pcr_primer_p1>
		<pcr_primer_p2>CAAACTTCAATTTCAAATATTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATTAGAAATCTTTTCTGGGGATACGTCCCGATAAATCAAGCCGGCGGGACACTTGTGGGATGCTTGAGAAGAGTTCGTTTTTTTGCTCTTTTCCGTCCGTTCAGGAATTTTTTCGCCAGCTTCCTCCTTTTTTTCTCATCCATTTTCCCATTTTTCTGAGAGTTTTCGATTACCTCTTCCTCACCCCGCTCCTTCTCTCACTCCCTCTTTCTCTTTATCCAGAGAATATTTGAAATTGAAGTTTG</canonical_amplicon>
		<polymorphic_amplicon>ATTAGAAATCTTTTCTGGGGATACGTCCCGATAAATCAAGCCGGCGGGACACTTGTGGGATGCTTGAGAAGAGTTCGTTTTTTTGCTCTTTTCCGTCCGTTCAGGAATTTTTTCGCCAGCTTCCTCCTTTTTTTCTCATCCATTTTCCCATTTTTCTGAGAGTTTTCRATTACCTCTTCCTCACCCCGCTCCTTCTCTCACTCCCTCTTTCTCTTTATCCAGAGAATATTTGAAATTGAAGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20398</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>887839</contig_pos>
        <strand>+</strand>
        <context>TCCTCACCCC[A/G]CTCCTTCTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCCATTTTCCCATTTTTCTGAGAGTTTTCGATTACCTCTTCCTCACCCC</left_flank>
        <right_flank>CTCCTTCTCTCACTCCCTCTTTCTCTTTATCCAGAGAATATTTGAAATTG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCAGGCGCCACACCAACTCTGCAATGGCTGCGGCTGCGCCAAAGCGGCGTATGGGCCTTGAAAAGGTGGGTGTTCTGTTTTTTTTCTTGTTGTTGTTGTTGTTGTCCTTCTCTTCGTGCTCCTTCTCTCTCATCAATCTTTCTACTCTTGGGGGCTCTGATTCTGCAGCATTGCCGCTCTAATTAGATGACTCATTTGGTTTAATGGGATTGCTTAGAAGAAATGAGCTTTGAGACTTGGTACTTTTTGAGTACATTGTAAAATTTAAAGAACACTTTTGAGACTTTCATGGGAACCCGTTTCATCTTAGATTAGAAATCTTTTCTGGGGATACGTCCCGATAAATCAAGCCGGCGGGACACTTGTGGGATGCTTGAGAAGAGTTCGTTTTTTTGCTCTTTTCCGTCCGTTCAGGAATTTTTTCGCCAGCTTCCTCCTTTTTTTCTCATCCATTTTCCCATTTTTCTGAGAGTTTTCGATTACCTCTTCCTCACCCCGCTCCTTCTCTCACTCCCTCTTTCTCTTTATCCAGAGAATATTTGAAATTGAAGTTTGGGAAAAAAAGTTTTAGAAGCAGAAGAGAGCATTTTTGAGATCAAGAGTTTGAGAGTGGAGACTACATATACTAGTTGGTGGCAATTTAATTTTCCGTCGCTTAGTTTGAGGAAACAGATGCCAAACGTTTCTTAAACGATTATTTATGCCTGAGTGATCAATCGCTTTGCCGCGATTAAAACCTCATGTGTTTTCAGTTTTTGTTGGACTGCGTGATTTTCGCCTCGAAATTTTTTTCTGCCTCCTCTTCTTCCAAGGAACTCGGCTTCCGATGCGATTATGTACTTACTTGTTGCATAGAAAATTTACTGGCTATTCTGACACACACACCCTCTCCTCGTGCATTTTAGCATTTTTATTGGCACAATTCTCCTCTCTCAGATGTTGTAGATCTCATTAGAAAAAGGAAAGAGCAGCAAAAAGTCGATTAGTTTTCCTTTTGT</canonical>
            <polymorphic>ATTCAGGCGCCACACCAACTCTGCAATGGCTGCGGCTGCGCCAAAGCGGCGTATGGGCCTTGAAAAGGTGGGTGTTCTGTTTTTTTTCTTGTTGTTGTTGTTGTTGTCCTTCTCTTCGTGCTCCTTCTCTCTCATCAATCTTTCTACTCTTGGGGGCTCTGATTCTGCAGCATTGCCGCTCTAATTAGATGACTCATTTGGTTTAATGGGATTGCTTAGAAGAAATGAGCTTTGAGACTTGGTACTTTTTGAGTACATTGTAAAATTTAAAGAACACTTTTGAGACTTTCATGGGAACCCGTTTCATCTTAGATTAGAAATCTTTTCTGGGGATACGTCCCGATAAATCAAGCCGGCGGGACACTTGTGGGATGCTTGAGAAGAGTTCGTTTTTTTGCTCTTTTCCGTCCGTTCAGGAATTTTTTCGCCAGCTTCCTCCTTTTTTTCTCATCCATTTTCCCATTTTTCTGAGAGTTTTCGATTACCTCTTCCTCACCCCRCTCCTTCTCTCACTCCCTCTTTCTCTTTATCCAGAGAATATTTGAAATTGAAGTTTGGGAAAAAAAGTTTTAGAAGCAGAAGAGAGCATTTTTGAGATCAAGAGTTTGAGAGTGGAGACTACATATACTAGTTGGTGGCAATTTAATTTTCCGTCGCTTAGTTTGAGGAAACAGATGCCAAACGTTTCTTAAACGATTATTTATGCCTGAGTGATCAATCGCTTTGCCGCGATTAAAACCTCATGTGTTTTCAGTTTTTGTTGGACTGCGTGATTTTCGCCTCGAAATTTTTTTCTGCCTCCTCTTCTTCCAAGGAACTCGGCTTCCGATGCGATTATGTACTTACTTGTTGCATAGAAAATTTACTGGCTATTCTGACACACACACCCTCTCCTCGTGCATTTTAGCATTTTTATTGGCACAATTCTCCTCTCTCAGATGTTGTAGATCTCATTAGAAAAAGGAAAGAGCAGCAAAAAGTCGATTAGTTTTCCTTTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>273 229 179 176 143</canonical_bands>
                <polymorphic_bands>372 273 179 176</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTAGAAATCTTTTCTGGGGATA</pcr_primer_p1>
		<pcr_primer_p2>CAAACTTCAATTTCAAATATTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATTAGAAATCTTTTCTGGGGATACGTCCCGATAAATCAAGCCGGCGGGACACTTGTGGGATGCTTGAGAAGAGTTCGTTTTTTTGCTCTTTTCCGTCCGTTCAGGAATTTTTTCGCCAGCTTCCTCCTTTTTTTCTCATCCATTTTCCCATTTTTCTGAGAGTTTTCGATTACCTCTTCCTCACCCCGCTCCTTCTCTCACTCCCTCTTTCTCTTTATCCAGAGAATATTTGAAATTGAAGTTTG</canonical_amplicon>
		<polymorphic_amplicon>ATTAGAAATCTTTTCTGGGGATACGTCCCGATAAATCAAGCCGGCGGGACACTTGTGGGATGCTTGAGAAGAGTTCGTTTTTTTGCTCTTTTCCGTCCGTTCAGGAATTTTTTCGCCAGCTTCCTCCTTTTTTTCTCATCCATTTTCCCATTTTTCTGAGAGTTTTCGATTACCTCTTCCTCACCCCRCTCCTTCTCTCACTCCCTCTTTCTCTTTATCCAGAGAATATTTGAAATTGAAGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20399</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>888359</contig_pos>
        <strand>+</strand>
        <context>CTYGATCTTT[A/C]CCGCGAGAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCAGCAAAAAGTCGATTAGTTTTCCTTTTGTCTTTCTCTTCTTGATCTTT</left_flank>
        <right_flank>CCGCGAGAGGGAAAGAAAGTCTGACATTCAGAAGTTTCCCATGGCGCCTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTCTTTATCCAGAGAATATTTGAAATTGAAGTTTGGGAAAAAAAGTTTTAGAAGCAGAAGAGAGCATTTTTGAGATCAAGAGTTTGAGAGTGGAGACTACATATACTAGTTGGTGGCAATTTAATTTTCCGTCGCTTAGTTTGAGGAAACAGATGCCAAACGTTTCTTAAACGATTATTTATGCCTGAGTGATCAATCGCTTTGCCGCGATTAAAACCTCATGTGTTTTCAGTTTTTGTTGGACTGCGTGATTTTCGCCTCGAAATTTTTTTCTGCCTCCTCTTCTTCCAAGGAACTCGGCTTCCGATGCGATTATGTACTTACTTGTTGCATAGAAAATTTACTGGCTATTCTGACACACACACCCTCTCCTCGTGCATTTTAGCATTTTTATTGGCACAATTCTCCTCTCTCAGATGTTGTAGATCTCATTAGAAAAAGGAAAGAGCAGCAAAAAGTCGATTAGTTTTCCTTTTGTCTTTCTCTTCTTGATCTTTACCGCGAGAGGGAAAGAAAGTCTGACATTCAGAAGTTTCCCATGGCGCCTGGCATAAACTCCTTCAAAAAATCCCATAAACTTTCTTTCTGCTTCCCAACCGTTGTCAACCATGTGGATTCGATTCAGTCTTCTCCTTTGAGGCCTTCTTATTCAATGCAGAAGGTAGTGTATTACACAAATTTGACACTGTTTGTGTGATCAGAGTTTGTCAAACTTGTATTATGAATTTTTTATTTTTTTTCTATCGCCTAGAAAAAGGGCATCTAATGATGATGAAAGTATCATCCATTTTATAATAATTGAATTCTTCTGCACGCGCCGCTCCGTGCTGCTACAAACCACATATGGAGTTAAGAGCGGGTGGAACGATTCCATTCCACAAAACAAATATTGCTAATATAGTCAACAGAGGGAGCGCGGGAAAACAGGCGGAAGGAAAAAAAGCGAACTGACAGTTTGTTTTCAGTCATGAACTCTATTATGTTTCAGATAGGTCTGT</canonical>
            <polymorphic>TTCTCTTTATCCAGAGAATATTTGAAATTGAAGTTTGGGAAAAAAAGTTTTAGAAGCAGAAGAGAGCATTTTTGAGATCAAGAGTTTGAGAGTGGAGACTACATATACTAGTTGGTGGCAATTTAATTTTCCGTCGCTTAGTTTGAGGAAACAGATGCCAAACGTTTCTTAAACGATTATTTATGCCTGAGTGATCAATCGCTTTGCCGCGATTAAAACCTCATGTGTTTTCAGTTTTTGTTGGACTGCGTGATTTTCGCCTCGAAATTTTTTTCTGCCTCCTCTTCTTCCAAGGAACTCGGCTTCCGATGCGATTATGTACTTACTTGTTGCATAGAAAATTTACTGGCTATTCTGACACACACACCCTCTCCTCGTGCATTTTAGCATTTTTATTGGCACAATTCTCCTCTCTCAGATGTTGTAGATCTCATTAGAAAAAGGAAAGAGCAGCAAAAAGTCGATTAGTTTTCCTTTTGTCTTTCTCTTCTTGATCTTTMCCGCGAGAGGGAAAGAAAGTCTGACATTCAGAAGTTTCCCATGGCGCCTGGCATAAACTCCTTCAAAAAATCCCATAAACTTTCTTTCTGCTTCCCAACCGTTGTCAACCATGTGGATTCGATTCAGTCTTCTCCTTTGAGGCCTTCTTATTCAATGCAGAAGGTAGTGTATTACACAAATTTGACACTGTTTGTGTGATCAGAGTTTGTCAAACTTGTATTATGAATTTTTTATTTTTTTTCTATCGCCTAGAAAAAGGGCATCTAATGATGATGAAAGTATCATCCATTTTATAATAATTGAATTCTTCTGCACGCGCCGCTCCGTGCTGCTACAAACCACATATGGAGTTAAGAGCGGGTGGAACGATTCCATTCCACAAAACAAATATTGCTAATATAGTCAACAGAGGGAGCGCGGGAAAACAGGCGGAAGGAAAAAAAGCGAACTGACAGTTTGTTTTCAGTCATGAACTCTATTATGTTTCAGATAGGTCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTACTGGCTATTCTGACACAC</pcr_primer_p1>
		<pcr_primer_p2>CAGAAAGAAAGTTTATGGGATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTACTGGCTATTCTGACACACACACCCTCTCCTCGTGCATTTTAGCATTTTTATTGGCACAATTCTCCTCTCTCAGATGTTGTAGATCTCATTAGAAAAAGGAAAGAGCAGCAAAAAGTCGATTAGTTTTCCTTTTGTCTTTCTCTTCTTGATCTTTACCGCGAGAGGGAAAGAAAGTCTGACATTCAGAAGTTTCCCATGGCGCCTGGCATAAACTCCTTCAAAAAATCCCATAAACTTTCTTTCTG</canonical_amplicon>
		<polymorphic_amplicon>ATTTACTGGCTATTCTGACACACACACCCTCTCCTCGTGCATTTTAGCATTTTTATTGGCACAATTCTCCTCTCTCAGATGTTGTAGATCTCATTAGAAAAAGGAAAGAGCAGCAAAAAGTCGATTAGTTTTCCTTTTGTCTTTCTCTTCTTGATCTTTMCCGCGAGAGGGAAAGAAAGTCTGACATTCAGAAGTTTCCCATGGCGCCTGGCATAAACTCCTTCAAAAAATCCCATAAACTTTCTTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20400</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>888351</contig_pos>
        <strand>+</strand>
        <context>TTTCTCTTCT[C/T]GATCTTTMCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGAAAGAGCAGCAAAAAGTCGATTAGTTTTCCTTTTGTCTTTCTCTTCT</left_flank>
        <right_flank>GATCTTTACCGCGAGAGGGAAAGAAAGTCTGACATTCAGAAGTTTCCCAT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCCTCTTTCTCTTTATCCAGAGAATATTTGAAATTGAAGTTTGGGAAAAAAAGTTTTAGAAGCAGAAGAGAGCATTTTTGAGATCAAGAGTTTGAGAGTGGAGACTACATATACTAGTTGGTGGCAATTTAATTTTCCGTCGCTTAGTTTGAGGAAACAGATGCCAAACGTTTCTTAAACGATTATTTATGCCTGAGTGATCAATCGCTTTGCCGCGATTAAAACCTCATGTGTTTTCAGTTTTTGTTGGACTGCGTGATTTTCGCCTCGAAATTTTTTTCTGCCTCCTCTTCTTCCAAGGAACTCGGCTTCCGATGCGATTATGTACTTACTTGTTGCATAGAAAATTTACTGGCTATTCTGACACACACACCCTCTCCTCGTGCATTTTAGCATTTTTATTGGCACAATTCTCCTCTCTCAGATGTTGTAGATCTCATTAGAAAAAGGAAAGAGCAGCAAAAAGTCGATTAGTTTTCCTTTTGTCTTTCTCTTCTTGATCTTTACCGCGAGAGGGAAAGAAAGTCTGACATTCAGAAGTTTCCCATGGCGCCTGGCATAAACTCCTTCAAAAAATCCCATAAACTTTCTTTCTGCTTCCCAACCGTTGTCAACCATGTGGATTCGATTCAGTCTTCTCCTTTGAGGCCTTCTTATTCAATGCAGAAGGTAGTGTATTACACAAATTTGACACTGTTTGTGTGATCAGAGTTTGTCAAACTTGTATTATGAATTTTTTATTTTTTTTCTATCGCCTAGAAAAAGGGCATCTAATGATGATGAAAGTATCATCCATTTTATAATAATTGAATTCTTCTGCACGCGCCGCTCCGTGCTGCTACAAACCACATATGGAGTTAAGAGCGGGTGGAACGATTCCATTCCACAAAACAAATATTGCTAATATAGTCAACAGAGGGAGCGCGGGAAAACAGGCGGAAGGAAAAAAAGCGAACTGACAGTTTGTTTTCAGTCATGAACTCTATTATGTTTCAGAT</canonical>
            <polymorphic>CTCCCTCTTTCTCTTTATCCAGAGAATATTTGAAATTGAAGTTTGGGAAAAAAAGTTTTAGAAGCAGAAGAGAGCATTTTTGAGATCAAGAGTTTGAGAGTGGAGACTACATATACTAGTTGGTGGCAATTTAATTTTCCGTCGCTTAGTTTGAGGAAACAGATGCCAAACGTTTCTTAAACGATTATTTATGCCTGAGTGATCAATCGCTTTGCCGCGATTAAAACCTCATGTGTTTTCAGTTTTTGTTGGACTGCGTGATTTTCGCCTCGAAATTTTTTTCTGCCTCCTCTTCTTCCAAGGAACTCGGCTTCCGATGCGATTATGTACTTACTTGTTGCATAGAAAATTTACTGGCTATTCTGACACACACACCCTCTCCTCGTGCATTTTAGCATTTTTATTGGCACAATTCTCCTCTCTCAGATGTTGTAGATCTCATTAGAAAAAGGAAAGAGCAGCAAAAAGTCGATTAGTTTTCCTTTTGTCTTTCTCTTCTYGATCTTTACCGCGAGAGGGAAAGAAAGTCTGACATTCAGAAGTTTCCCATGGCGCCTGGCATAAACTCCTTCAAAAAATCCCATAAACTTTCTTTCTGCTTCCCAACCGTTGTCAACCATGTGGATTCGATTCAGTCTTCTCCTTTGAGGCCTTCTTATTCAATGCAGAAGGTAGTGTATTACACAAATTTGACACTGTTTGTGTGATCAGAGTTTGTCAAACTTGTATTATGAATTTTTTATTTTTTTTCTATCGCCTAGAAAAAGGGCATCTAATGATGATGAAAGTATCATCCATTTTATAATAATTGAATTCTTCTGCACGCGCCGCTCCGTGCTGCTACAAACCACATATGGAGTTAAGAGCGGGTGGAACGATTCCATTCCACAAAACAAATATTGCTAATATAGTCAACAGAGGGAGCGCGGGAAAACAGGCGGAAGGAAAAAAAGCGAACTGACAGTTTGTTTTCAGTCATGAACTCTATTATGTTTCAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTACTGGCTATTCTGACACAC</pcr_primer_p1>
		<pcr_primer_p2>CAGAAAGAAAGTTTATGGGATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTACTGGCTATTCTGACACACACACCCTCTCCTCGTGCATTTTAGCATTTTTATTGGCACAATTCTCCTCTCTCAGATGTTGTAGATCTCATTAGAAAAAGGAAAGAGCAGCAAAAAGTCGATTAGTTTTCCTTTTGTCTTTCTCTTCTTGATCTTTACCGCGAGAGGGAAAGAAAGTCTGACATTCAGAAGTTTCCCATGGCGCCTGGCATAAACTCCTTCAAAAAATCCCATAAACTTTCTTTCTG</canonical_amplicon>
		<polymorphic_amplicon>ATTTACTGGCTATTCTGACACACACACCCTCTCCTCGTGCATTTTAGCATTTTTATTGGCACAATTCTCCTCTCTCAGATGTTGTAGATCTCATTAGAAAAAGGAAAGAGCAGCAAAAAGTCGATTAGTTTTCCTTTTGTCTTTCTCTTCTYGATCTTTACCGCGAGAGGGAAAGAAAGTCTGACATTCAGAAGTTTCCCATGGCGCCTGGCATAAACTCCTTCAAAAAATCCCATAAACTTTCTTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20401</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>888324</contig_pos>
        <strand>+</strand>
        <context>AAAAAGTCGA[C/T]TAGTTTTCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGATGTTGTAGATCTCATTAGAAAAAGGAAAGAGCAGCAAAAAGTCGA</left_flank>
        <right_flank>TAGTTTTCCTTTTGTCTTTCTCTTCTTGATCTTTACCGCGAGAGGGAAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTTCCTCACCCCGCTCCTTCTCTCACTCCCTCTTTCTCTTTATCCAGAGAATATTTGAAATTGAAGTTTGGGAAAAAAAGTTTTAGAAGCAGAAGAGAGCATTTTTGAGATCAAGAGTTTGAGAGTGGAGACTACATATACTAGTTGGTGGCAATTTAATTTTCCGTCGCTTAGTTTGAGGAAACAGATGCCAAACGTTTCTTAAACGATTATTTATGCCTGAGTGATCAATCGCTTTGCCGCGATTAAAACCTCATGTGTTTTCAGTTTTTGTTGGACTGCGTGATTTTCGCCTCGAAATTTTTTTCTGCCTCCTCTTCTTCCAAGGAACTCGGCTTCCGATGCGATTATGTACTTACTTGTTGCATAGAAAATTTACTGGCTATTCTGACACACACACCCTCTCCTCGTGCATTTTAGCATTTTTATTGGCACAATTCTCCTCTCTCAGATGTTGTAGATCTCATTAGAAAAAGGAAAGAGCAGCAAAAAGTCGATTAGTTTTCCTTTTGTCTTTCTCTTCTTGATCTTTACCGCGAGAGGGAAAGAAAGTCTGACATTCAGAAGTTTCCCATGGCGCCTGGCATAAACTCCTTCAAAAAATCCCATAAACTTTCTTTCTGCTTCCCAACCGTTGTCAACCATGTGGATTCGATTCAGTCTTCTCCTTTGAGGCCTTCTTATTCAATGCAGAAGGTAGTGTATTACACAAATTTGACACTGTTTGTGTGATCAGAGTTTGTCAAACTTGTATTATGAATTTTTTATTTTTTTTCTATCGCCTAGAAAAAGGGCATCTAATGATGATGAAAGTATCATCCATTTTATAATAATTGAATTCTTCTGCACGCGCCGCTCCGTGCTGCTACAAACCACATATGGAGTTAAGAGCGGGTGGAACGATTCCATTCCACAAAACAAATATTGCTAATATAGTCAACAGAGGGAGCGCGGGAAAACAGGCGGAAGGAAAAAAAGCGAACTGACAGTTTGTTTTC</canonical>
            <polymorphic>CTCTTCCTCACCCCGCTCCTTCTCTCACTCCCTCTTTCTCTTTATCCAGAGAATATTTGAAATTGAAGTTTGGGAAAAAAAGTTTTAGAAGCAGAAGAGAGCATTTTTGAGATCAAGAGTTTGAGAGTGGAGACTACATATACTAGTTGGTGGCAATTTAATTTTCCGTCGCTTAGTTTGAGGAAACAGATGCCAAACGTTTCTTAAACGATTATTTATGCCTGAGTGATCAATCGCTTTGCCGCGATTAAAACCTCATGTGTTTTCAGTTTTTGTTGGACTGCGTGATTTTCGCCTCGAAATTTTTTTCTGCCTCCTCTTCTTCCAAGGAACTCGGCTTCCGATGCGATTATGTACTTACTTGTTGCATAGAAAATTTACTGGCTATTCTGACACACACACCCTCTCCTCGTGCATTTTAGCATTTTTATTGGCACAATTCTCCTCTCTCAGATGTTGTAGATCTCATTAGAAAAAGGAAAGAGCAGCAAAAAGTCGAYTAGTTTTCCTTTTGTCTTTCTCTTCTTGATCTTTACCGCGAGAGGGAAAGAAAGTCTGACATTCAGAAGTTTCCCATGGCGCCTGGCATAAACTCCTTCAAAAAATCCCATAAACTTTCTTTCTGCTTCCCAACCGTTGTCAACCATGTGGATTCGATTCAGTCTTCTCCTTTGAGGCCTTCTTATTCAATGCAGAAGGTAGTGTATTACACAAATTTGACACTGTTTGTGTGATCAGAGTTTGTCAAACTTGTATTATGAATTTTTTATTTTTTTTCTATCGCCTAGAAAAAGGGCATCTAATGATGATGAAAGTATCATCCATTTTATAATAATTGAATTCTTCTGCACGCGCCGCTCCGTGCTGCTACAAACCACATATGGAGTTAAGAGCGGGTGGAACGATTCCATTCCACAAAACAAATATTGCTAATATAGTCAACAGAGGGAGCGCGGGAAAACAGGCGGAAGGAAAAAAAGCGAACTGACAGTTTGTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTACTGGCTATTCTGACACAC</pcr_primer_p1>
		<pcr_primer_p2>CAGAAAGAAAGTTTATGGGATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTACTGGCTATTCTGACACACACACCCTCTCCTCGTGCATTTTAGCATTTTTATTGGCACAATTCTCCTCTCTCAGATGTTGTAGATCTCATTAGAAAAAGGAAAGAGCAGCAAAAAGTCGATTAGTTTTCCTTTTGTCTTTCTCTTCTTGATCTTTACCGCGAGAGGGAAAGAAAGTCTGACATTCAGAAGTTTCCCATGGCGCCTGGCATAAACTCCTTCAAAAAATCCCATAAACTTTCTTTCTG</canonical_amplicon>
		<polymorphic_amplicon>ATTTACTGGCTATTCTGACACACACACCCTCTCCTCGTGCATTTTAGCATTTTTATTGGCACAATTCTCCTCTCTCAGATGTTGTAGATCTCATTAGAAAAAGGAAAGAGCAGCAAAAAGTCGAYTAGTTTTCCTTTTGTCTTTCTCTTCTTGATCTTTACCGCGAGAGGGAAAGAAAGTCTGACATTCAGAAGTTTCCCATGGCGCCTGGCATAAACTCCTTCAAAAAATCCCATAAACTTTCTTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20402</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>888102</contig_pos>
        <strand>+</strand>
        <context>AGTTTTTGTT[G/T]GACTGCGTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATCAATCGCTTTGCCGCGATTAAAACCTCATGTGTTTTCAGTTTTTGTT</left_flank>
        <right_flank>GACTGCGTGATTTTCGCCTCGAAATTTTTTTCTGCCTCCTCTTCTTCCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTAAAGAACACTTTTGAGACTTTCATGGGAACCCGTTTCATCTTAGATTAGAAATCTTTTCTGGGGATACGTCCCGATAAATCAAGCCGGCGGGACACTTGTGGGATGCTTGAGAAGAGTTCGTTTTTTTGCTCTTTTCCGTCCGTTCAGGAATTTTTTCGCCAGCTTCCTCCTTTTTTTCTCATCCATTTTCCCATTTTTCTGAGAGTTTTCGATTACCTCTTCCTCACCCCGCTCCTTCTCTCACTCCCTCTTTCTCTTTATCCAGAGAATATTTGAAATTGAAGTTTGGGAAAAAAAGTTTTAGAAGCAGAAGAGAGCATTTTTGAGATCAAGAGTTTGAGAGTGGAGACTACATATACTAGTTGGTGGCAATTTAATTTTCCGTCGCTTAGTTTGAGGAAACAGATGCCAAACGTTTCTTAAACGATTATTTATGCCTGAGTGATCAATCGCTTTGCCGCGATTAAAACCTCATGTGTTTTCAGTTTTTGTTGGACTGCGTGATTTTCGCCTCGAAATTTTTTTCTGCCTCCTCTTCTTCCAAGGAACTCGGCTTCCGATGCGATTATGTACTTACTTGTTGCATAGAAAATTTACTGGCTATTCTGACACACACACCCTCTCCTCGTGCATTTTAGCATTTTTATTGGCACAATTCTCCTCTCTCAGATGTTGTAGATCTCATTAGAAAAAGGAAAGAGCAGCAAAAAGTCGATTAGTTTTCCTTTTGTCTTTCTCTTCTTGATCTTTACCGCGAGAGGGAAAGAAAGTCTGACATTCAGAAGTTTCCCATGGCGCCTGGCATAAACTCCTTCAAAAAATCCCATAAACTTTCTTTCTGCTTCCCAACCGTTGTCAACCATGTGGATTCGATTCAGTCTTCTCCTTTGAGGCCTTCTTATTCAATGCAGAAGGTAGTGTATTACACAAATTTGACACTGTTTGTGTGATCAGAGTTTGTCAAACTTGTATTATGAATTTTTTATTTTTTTTC</canonical>
            <polymorphic>AATTTAAAGAACACTTTTGAGACTTTCATGGGAACCCGTTTCATCTTAGATTAGAAATCTTTTCTGGGGATACGTCCCGATAAATCAAGCCGGCGGGACACTTGTGGGATGCTTGAGAAGAGTTCGTTTTTTTGCTCTTTTCCGTCCGTTCAGGAATTTTTTCGCCAGCTTCCTCCTTTTTTTCTCATCCATTTTCCCATTTTTCTGAGAGTTTTCGATTACCTCTTCCTCACCCCGCTCCTTCTCTCACTCCCTCTTTCTCTTTATCCAGAGAATATTTGAAATTGAAGTTTGGGAAAAAAAGTTTTAGAAGCAGAAGAGAGCATTTTTGAGATCAAGAGTTTGAGAGTGGAGACTACATATACTAGTTGGTGGCAATTTAATTTTCCGTCGCTTAGTTTGAGGAAACAGATGCCAAACGTTTCTTAAACGATTATTTATGCCTGAGTGATCAATCGCTTTGCCGCGATTAAAACCTCATGTGTTTTCAGTTTTTGTTKGACTGCGTGATTTTCGCCTCGAAATTTTTTTCTGCCTCCTCTTCTTCCAAGGAACTCGGCTTCCGATGCGATTATGTACTTACTTGTTGCATAGAAAATTTACTGGCTATTCTGACACACACACCCTCTCCTCGTGCATTTTAGCATTTTTATTGGCACAATTCTCCTCTCTCAGATGTTGTAGATCTCATTAGAAAAAGGAAAGAGCAGCAAAAAGTCGATTAGTTTTCCTTTTGTCTTTCTCTTCTTGATCTTTACCGCGAGAGGGAAAGAAAGTCTGACATTCAGAAGTTTCCCATGGCGCCTGGCATAAACTCCTTCAAAAAATCCCATAAACTTTCTTTCTGCTTCCCAACCGTTGTCAACCATGTGGATTCGATTCAGTCTTCTCCTTTGAGGCCTTCTTATTCAATGCAGAAGGTAGTGTATTACACAAATTTGACACTGTTTGTGTGATCAGAGTTTGTCAAACTTGTATTATGAATTTTTTATTTTTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATATACTAGTTGGTGGCAATTT</pcr_primer_p1>
		<pcr_primer_p2>CCAGTAAATTTTCTATGCAACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CATATACTAGTTGGTGGCAATTTAATTTTCCGTCGCTTAGTTTGAGGAAACAGATGCCAAACGTTTCTTAAACGATTATTTATGCCTGAGTGATCAATCGCTTTGCCGCGATTAAAACCTCATGTGTTTTCAGTTTTTGTTGGACTGCGTGATTTTCGCCTCGAAATTTTTTTCTGCCTCCTCTTCTTCCAAGGAACTCGGCTTCCGATGCGATTATGTACTTACTTGTTGCATAGAAAATTTACTGG</canonical_amplicon>
		<polymorphic_amplicon>CATATACTAGTTGGTGGCAATTTAATTTTCCGTCGCTTAGTTTGAGGAAACAGATGCCAAACGTTTCTTAAACGATTATTTATGCCTGAGTGATCAATCGCTTTGCCGCGATTAAAACCTCATGTGTTTTCAGTTTTTGTTKGACTGCGTGATTTTCGCCTCGAAATTTTTTTCTGCCTCCTCTTCTTCCAAGGAACTCGGCTTCCGATGCGATTATGTACTTACTTGTTGCATAGAAAATTTACTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20403</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>888091</contig_pos>
        <strand>+</strand>
        <context>CATGTGTTTT[C/T]AGTTTTTGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATGCCTGAGTGATCAATCGCTTTGCCGCGATTAAAACCTCATGTGTTTT</left_flank>
        <right_flank>AGTTTTTGTTGGACTGCGTGATTTTCGCCTCGAAATTTTTTTCTGCCTCC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACATTGTAAAATTTAAAGAACACTTTTGAGACTTTCATGGGAACCCGTTTCATCTTAGATTAGAAATCTTTTCTGGGGATACGTCCCGATAAATCAAGCCGGCGGGACACTTGTGGGATGCTTGAGAAGAGTTCGTTTTTTTGCTCTTTTCCGTCCGTTCAGGAATTTTTTCGCCAGCTTCCTCCTTTTTTTCTCATCCATTTTCCCATTTTTCTGAGAGTTTTCGATTACCTCTTCCTCACCCCGCTCCTTCTCTCACTCCCTCTTTCTCTTTATCCAGAGAATATTTGAAATTGAAGTTTGGGAAAAAAAGTTTTAGAAGCAGAAGAGAGCATTTTTGAGATCAAGAGTTTGAGAGTGGAGACTACATATACTAGTTGGTGGCAATTTAATTTTCCGTCGCTTAGTTTGAGGAAACAGATGCCAAACGTTTCTTAAACGATTATTTATGCCTGAGTGATCAATCGCTTTGCCGCGATTAAAACCTCATGTGTTTTCAGTTTTTGTTGGACTGCGTGATTTTCGCCTCGAAATTTTTTTCTGCCTCCTCTTCTTCCAAGGAACTCGGCTTCCGATGCGATTATGTACTTACTTGTTGCATAGAAAATTTACTGGCTATTCTGACACACACACCCTCTCCTCGTGCATTTTAGCATTTTTATTGGCACAATTCTCCTCTCTCAGATGTTGTAGATCTCATTAGAAAAAGGAAAGAGCAGCAAAAAGTCGATTAGTTTTCCTTTTGTCTTTCTCTTCTTGATCTTTACCGCGAGAGGGAAAGAAAGTCTGACATTCAGAAGTTTCCCATGGCGCCTGGCATAAACTCCTTCAAAAAATCCCATAAACTTTCTTTCTGCTTCCCAACCGTTGTCAACCATGTGGATTCGATTCAGTCTTCTCCTTTGAGGCCTTCTTATTCAATGCAGAAGGTAGTGTATTACACAAATTTGACACTGTTTGTGTGATCAGAGTTTGTCAAACTTGTATTATGAATTTTT</canonical>
            <polymorphic>GTACATTGTAAAATTTAAAGAACACTTTTGAGACTTTCATGGGAACCCGTTTCATCTTAGATTAGAAATCTTTTCTGGGGATACGTCCCGATAAATCAAGCCGGCGGGACACTTGTGGGATGCTTGAGAAGAGTTCGTTTTTTTGCTCTTTTCCGTCCGTTCAGGAATTTTTTCGCCAGCTTCCTCCTTTTTTTCTCATCCATTTTCCCATTTTTCTGAGAGTTTTCGATTACCTCTTCCTCACCCCGCTCCTTCTCTCACTCCCTCTTTCTCTTTATCCAGAGAATATTTGAAATTGAAGTTTGGGAAAAAAAGTTTTAGAAGCAGAAGAGAGCATTTTTGAGATCAAGAGTTTGAGAGTGGAGACTACATATACTAGTTGGTGGCAATTTAATTTTCCGTCGCTTAGTTTGAGGAAACAGATGCCAAACGTTTCTTAAACGATTATTTATGCCTGAGTGATCAATCGCTTTGCCGCGATTAAAACCTCATGTGTTTTYAGTTTTTGTTGGACTGCGTGATTTTCGCCTCGAAATTTTTTTCTGCCTCCTCTTCTTCCAAGGAACTCGGCTTCCGATGCGATTATGTACTTACTTGTTGCATAGAAAATTTACTGGCTATTCTGACACACACACCCTCTCCTCGTGCATTTTAGCATTTTTATTGGCACAATTCTCCTCTCTCAGATGTTGTAGATCTCATTAGAAAAAGGAAAGAGCAGCAAAAAGTCGATTAGTTTTCCTTTTGTCTTTCTCTTCTTGATCTTTACCGCGAGAGGGAAAGAAAGTCTGACATTCAGAAGTTTCCCATGGCGCCTGGCATAAACTCCTTCAAAAAATCCCATAAACTTTCTTTCTGCTTCCCAACCGTTGTCAACCATGTGGATTCGATTCAGTCTTCTCCTTTGAGGCCTTCTTATTCAATGCAGAAGGTAGTGTATTACACAAATTTGACACTGTTTGTGTGATCAGAGTTTGTCAAACTTGTATTATGAATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATATACTAGTTGGTGGCAATTT</pcr_primer_p1>
		<pcr_primer_p2>CCAGTAAATTTTCTATGCAACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CATATACTAGTTGGTGGCAATTTAATTTTCCGTCGCTTAGTTTGAGGAAACAGATGCCAAACGTTTCTTAAACGATTATTTATGCCTGAGTGATCAATCGCTTTGCCGCGATTAAAACCTCATGTGTTTTCAGTTTTTGTTGGACTGCGTGATTTTCGCCTCGAAATTTTTTTCTGCCTCCTCTTCTTCCAAGGAACTCGGCTTCCGATGCGATTATGTACTTACTTGTTGCATAGAAAATTTACTGG</canonical_amplicon>
		<polymorphic_amplicon>CATATACTAGTTGGTGGCAATTTAATTTTCCGTCGCTTAGTTTGAGGAAACAGATGCCAAACGTTTCTTAAACGATTATTTATGCCTGAGTGATCAATCGCTTTGCCGCGATTAAAACCTCATGTGTTTTYAGTTTTTGTTGGACTGCGTGATTTTCGCCTCGAAATTTTTTTCTGCCTCCTCTTCTTCCAAGGAACTCGGCTTCCGATGCGATTATGTACTTACTTGTTGCATAGAAAATTTACTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20404</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>888013</contig_pos>
        <strand>+</strand>
        <context>TGAGGAAACA[G/T]ATGCCAAACG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATACTAGTTGGTGGCAATTTAATTTTCCGTCGCTTAGTTTGAGGAAACA</left_flank>
        <right_flank>ATGCCAAACGTTTCTTAAACGATTATTTATGCCTGAGTGATCAATCGCTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCGCTCTAATTAGATGACTCATTTGGTTTAATGGGATTGCTTAGAAGAAATGAGCTTTGAGACTTGGTACTTTTTGAGTACATTGTAAAATTTAAAGAACACTTTTGAGACTTTCATGGGAACCCGTTTCATCTTAGATTAGAAATCTTTTCTGGGGATACGTCCCGATAAATCAAGCCGGCGGGACACTTGTGGGATGCTTGAGAAGAGTTCGTTTTTTTGCTCTTTTCCGTCCGTTCAGGAATTTTTTCGCCAGCTTCCTCCTTTTTTTCTCATCCATTTTCCCATTTTTCTGAGAGTTTTCGATTACCTCTTCCTCACCCCGCTCCTTCTCTCACTCCCTCTTTCTCTTTATCCAGAGAATATTTGAAATTGAAGTTTGGGAAAAAAAGTTTTAGAAGCAGAAGAGAGCATTTTTGAGATCAAGAGTTTGAGAGTGGAGACTACATATACTAGTTGGTGGCAATTTAATTTTCCGTCGCTTAGTTTGAGGAAACAGATGCCAAACGTTTCTTAAACGATTATTTATGCCTGAGTGATCAATCGCTTTGCCGCGATTAAAACCTCATGTGTTTTCAGTTTTTGTTGGACTGCGTGATTTTCGCCTCGAAATTTTTTTCTGCCTCCTCTTCTTCCAAGGAACTCGGCTTCCGATGCGATTATGTACTTACTTGTTGCATAGAAAATTTACTGGCTATTCTGACACACACACCCTCTCCTCGTGCATTTTAGCATTTTTATTGGCACAATTCTCCTCTCTCAGATGTTGTAGATCTCATTAGAAAAAGGAAAGAGCAGCAAAAAGTCGATTAGTTTTCCTTTTGTCTTTCTCTTCTTGATCTTTACCGCGAGAGGGAAAGAAAGTCTGACATTCAGAAGTTTCCCATGGCGCCTGGCATAAACTCCTTCAAAAAATCCCATAAACTTTCTTTCTGCTTCCCAACCGTTGTCAACCATGTGGATTCGATTCAGTCTTCTCCTTTGAGGCCTTCTTATTCA</canonical>
            <polymorphic>GCCGCTCTAATTAGATGACTCATTTGGTTTAATGGGATTGCTTAGAAGAAATGAGCTTTGAGACTTGGTACTTTTTGAGTACATTGTAAAATTTAAAGAACACTTTTGAGACTTTCATGGGAACCCGTTTCATCTTAGATTAGAAATCTTTTCTGGGGATACGTCCCGATAAATCAAGCCGGCGGGACACTTGTGGGATGCTTGAGAAGAGTTCGTTTTTTTGCTCTTTTCCGTCCGTTCAGGAATTTTTTCGCCAGCTTCCTCCTTTTTTTCTCATCCATTTTCCCATTTTTCTGAGAGTTTTCGATTACCTCTTCCTCACCCCGCTCCTTCTCTCACTCCCTCTTTCTCTTTATCCAGAGAATATTTGAAATTGAAGTTTGGGAAAAAAAGTTTTAGAAGCAGAAGAGAGCATTTTTGAGATCAAGAGTTTGAGAGTGGAGACTACATATACTAGTTGGTGGCAATTTAATTTTCCGTCGCTTAGTTTGAGGAAACAKATGCCAAACGTTTCTTAAACGATTATTTATGCCTGAGTGATCAATCGCTTTGCCGCGATTAAAACCTCATGTGTTTTCAGTTTTTGTTGGACTGCGTGATTTTCGCCTCGAAATTTTTTTCTGCCTCCTCTTCTTCCAAGGAACTCGGCTTCCGATGCGATTATGTACTTACTTGTTGCATAGAAAATTTACTGGCTATTCTGACACACACACCCTCTCCTCGTGCATTTTAGCATTTTTATTGGCACAATTCTCCTCTCTCAGATGTTGTAGATCTCATTAGAAAAAGGAAAGAGCAGCAAAAAGTCGATTAGTTTTCCTTTTGTCTTTCTCTTCTTGATCTTTACCGCGAGAGGGAAAGAAAGTCTGACATTCAGAAGTTTCCCATGGCGCCTGGCATAAACTCCTTCAAAAAATCCCATAAACTTTCTTTCTGCTTCCCAACCGTTGTCAACCATGTGGATTCGATTCAGTCTTCTCCTTTGAGGCCTTCTTATTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATATACTAGTTGGTGGCAATTT</pcr_primer_p1>
		<pcr_primer_p2>CCAGTAAATTTTCTATGCAACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CATATACTAGTTGGTGGCAATTTAATTTTCCGTCGCTTAGTTTGAGGAAACAGATGCCAAACGTTTCTTAAACGATTATTTATGCCTGAGTGATCAATCGCTTTGCCGCGATTAAAACCTCATGTGTTTTCAGTTTTTGTTGGACTGCGTGATTTTCGCCTCGAAATTTTTTTCTGCCTCCTCTTCTTCCAAGGAACTCGGCTTCCGATGCGATTATGTACTTACTTGTTGCATAGAAAATTTACTGG</canonical_amplicon>
		<polymorphic_amplicon>CATATACTAGTTGGTGGCAATTTAATTTTCCGTCGCTTAGTTTGAGGAAACAKATGCCAAACGTTTCTTAAACGATTATTTATGCCTGAGTGATCAATCGCTTTGCCGCGATTAAAACCTCATGTGTTTTCAGTTTTTGTTGGACTGCGTGATTTTCGCCTCGAAATTTTTTTCTGCCTCCTCTTCTTCCAAGGAACTCGGCTTCCGATGCGATTATGTACTTACTTGTTGCATAGAAAATTTACTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20405</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>889728</contig_pos>
        <strand></strand>
        <context>tcaattagta[G/A]attatttatc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTCAATTATCACAGTTTATTCAAGAGACATCGACTAATTTTCAATTAGTA</left_flank>
        <right_flank>ATTATTTATCATGATATCACTCATATTTTGTTAGTTGAGAGATTCTTGAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAACCTGATAAAGCTGGAAAGGGAGGTGAAGATAGTCACAATGATCGACCATCCGCACATTGTCAAATGTTATGAGGTACCGTAATCTGGATCAGAAAAATAGGCTGAAGTTCATATTTTCAGATCATGAGGGTTGACAACATGTTATACATTGTAAGCGAATACTGTAGCACGGGAGAGTTATATGGTAGGAATTAAGCTGAAAAATGCAAAATTGATTTGGAAAAATTTTCAGCTACTCTGATGGGAAAAGGTCGTGTGACAGAGGATATTGCTCGAAAATGGTTTACTGAAACGGCAGCTGCAGTGTCCTATCTTCACAATAAAGGAATAGTGCATCGGGATTTGAAAACGGAGAACATTTTATTAGGCAAAGATTCGAAAATCAAATTGATTGGTGAGCCTCGTATCATATTTTATCTAATGGAAGCCCGCTTGCACTTTGAGCTCAATTATCACAGTTTATTCAAGAGACATCGACTAATTTTCAATTAGTAGATTATTTATCATGATATCACTCATATTTTGTTAGTTGAGAGATTCTTGATAGCTTTTATAGAAACCGAGATAATTGAGCTTAAGCGTAGGCTTCTTTTAGATGGGGTATTTTACTTTGGTTGTTGCTAATCTTAAAAATTTCAGATTTTGGGTTTTCAAATTTTCAAACTCCCGATCAACTGCTGAACACATGGTGCGGTTCACCTCCCTATGCGGCACCGGAATTGTTATTAGGTACCTCACTTCTAGGAAACAAGAAAAAAAAATGCATAACCTTTTGCAGGTAACTCGTACGACGGCATGAAAGCTGATATCTGGTCCATGGGTGTGTTGTTATACATTCTCGTGACTGGCGGATTTCCTTTCGGCAGTGAATCAGTAAACGATCTCAAGAGATCCGTTCTCTCTGGCGTCGTTAAGATTCCGTATTGGGTTTCTGTTGGTGAGTGTGACACTTCTCGGGGTGGTGGCAGACCGGAAGACAGATGACGTAATCGTTC</canonical>
            <polymorphic>GAGAACCTGATAAAGCTGGAAAGGGAGGTGAAGATAGTCACAATGATCGACCATCCGCACATTGTCAAATGTTATGAGGTACCGTAATCTGGATCAGAAAAATAGGCTGAAGTTCATATTTTCAGATCATGAGGGTTGACAACATGTTATACATTGTAAGCGAATACTGTAGCACGGGAGAGTTATATGGTAGGAATTAAGCTGAAAAATGCAAAATTGATTTGGAAAAATTTTCAGCTACTCTGATGGGAAAAGGTCGTGTGACAGAGGATATTGCTCGAAAATGGTTTACTGAAACGGCAGCTGCAGTGTCCTATCTTCACAATAAAGGAATAGTGCATCGGGATTTGAAAACGGAGAACATTTTATTAGGCAAAGATTCGAAAATCAAATTGATTGGTGAGCCTCGTATCATATTTTATCTAATGGAAGCCCGCTTGCACTTTGAGCTCAATTATCACAGTTTATTCAAGAGACATCGACTAATTTTCAATTAGTARATTATTTATCATGATATCACTCATATTTTGTTAGTTGAGAGATTCTTGATAGCTTTTATAGAAACCGAGATAATTGAGCTTAAGCGTAGGCTTCTTTTAGATGGGGTATTTTACTTTGGTTGTTGCTAATCTTAAAAATTTCAGATTTTGGGTTTTCAAATTTTCAAACTCCCGATCAACTGCTGAACACATGGTGCGGTTCACCTCCCTATGCGGCACCGGAATTGTTATTAGGTACCTCACTTCTAGGAAACAAGAAAAAAAAATGCATAACCTTTTGCAGGTAACTCGTACGACGGCATGAAAGCTGATATCTGGTCCATGGGTGTGTTGTTATACATTCTCGTGACTGGCGGATTTCCTTTCGGCAGTGAATCAGTAAACGATCTCAAGAGATCCGTTCTCTCTGGCGTCGTTAAGATTCCGTATTGGGTTTCTGTTGGTGAGTGTGACACTTCTCGGGGTGGTGGCAGACCGGAAGACAGATGACGTAATCGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGCCTCGTATCATATTTTATC</pcr_primer_p1>
		<pcr_primer_p2>TGAAATTTTTAAGATTAGCAACAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TGAGCCTCGTATCATATTTTATCTAATGGAAGCCCGCTTGCACTTTGAGCTCAATTATCACAGTTTATTCAAGAGACATCGACTAATTTTCAATTAGTAGATTATTTATCATGATATCACTCATATTTTGTTAGTTGAGAGATTCTTGATAGCTTTTATAGAAACCGAGATAATTGAGCTTAAGCGTAGGCTTCTTTTAGATGGGGTATTTTACTTTGGTTGTTGCTAATCTTAAAAATTTCA</canonical_amplicon>
		<polymorphic_amplicon>TGAGCCTCGTATCATATTTTATCTAATGGAAGCCCGCTTGCACTTTGAGCTCAATTATCACAGTTTATTCAAGAGACATCGACTAATTTTCAATTAGTARATTATTTATCATGATATCACTCATATTTTGTTAGTTGAGAGATTCTTGATAGCTTTTATAGAAACCGAGATAATTGAGCTTAAGCGTAGGCTTCTTTTAGATGGGGTATTTTACTTTGGTTGTTGCTAATCTTAAAAATTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20406</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>889680</contig_pos>
        <strand></strand>
        <context>actttgagct[C/T]aattatcaca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGCCTCGTATCATATTTTATCTAATGGAAGCCCGCTTGCACTTTGAGCT</left_flank>
        <right_flank>AATTATCACAGTTTATTCAAGAGACATCGACTAATTTTCAATTAGTAGAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTTCAGGTGGCAGTGAAAAGTATTGATGTATCAAAACTGGATAAAGAGAACCTGATAAAGCTGGAAAGGGAGGTGAAGATAGTCACAATGATCGACCATCCGCACATTGTCAAATGTTATGAGGTACCGTAATCTGGATCAGAAAAATAGGCTGAAGTTCATATTTTCAGATCATGAGGGTTGACAACATGTTATACATTGTAAGCGAATACTGTAGCACGGGAGAGTTATATGGTAGGAATTAAGCTGAAAAATGCAAAATTGATTTGGAAAAATTTTCAGCTACTCTGATGGGAAAAGGTCGTGTGACAGAGGATATTGCTCGAAAATGGTTTACTGAAACGGCAGCTGCAGTGTCCTATCTTCACAATAAAGGAATAGTGCATCGGGATTTGAAAACGGAGAACATTTTATTAGGCAAAGATTCGAAAATCAAATTGATTGGTGAGCCTCGTATCATATTTTATCTAATGGAAGCCCGCTTGCACTTTGAGCTCAATTATCACAGTTTATTCAAGAGACATCGACTAATTTTCAATTAGTAGATTATTTATCATGATATCACTCATATTTTGTTAGTTGAGAGATTCTTGATAGCTTTTATAGAAACCGAGATAATTGAGCTTAAGCGTAGGCTTCTTTTAGATGGGGTATTTTACTTTGGTTGTTGCTAATCTTAAAAATTTCAGATTTTGGGTTTTCAAATTTTCAAACTCCCGATCAACTGCTGAACACATGGTGCGGTTCACCTCCCTATGCGGCACCGGAATTGTTATTAGGTACCTCACTTCTAGGAAACAAGAAAAAAAAATGCATAACCTTTTGCAGGTAACTCGTACGACGGCATGAAAGCTGATATCTGGTCCATGGGTGTGTTGTTATACATTCTCGTGACTGGCGGATTTCCTTTCGGCAGTGAATCAGTAAACGATCTCAAGAGATCCGTTCTCTCTGGCGTCGTTAAGATTCCGTATTGGGTTTCTGTTGGTGAGTGTGA</canonical>
            <polymorphic>GATTTTCAGGTGGCAGTGAAAAGTATTGATGTATCAAAACTGGATAAAGAGAACCTGATAAAGCTGGAAAGGGAGGTGAAGATAGTCACAATGATCGACCATCCGCACATTGTCAAATGTTATGAGGTACCGTAATCTGGATCAGAAAAATAGGCTGAAGTTCATATTTTCAGATCATGAGGGTTGACAACATGTTATACATTGTAAGCGAATACTGTAGCACGGGAGAGTTATATGGTAGGAATTAAGCTGAAAAATGCAAAATTGATTTGGAAAAATTTTCAGCTACTCTGATGGGAAAAGGTCGTGTGACAGAGGATATTGCTCGAAAATGGTTTACTGAAACGGCAGCTGCAGTGTCCTATCTTCACAATAAAGGAATAGTGCATCGGGATTTGAAAACGGAGAACATTTTATTAGGCAAAGATTCGAAAATCAAATTGATTGGTGAGCCTCGTATCATATTTTATCTAATGGAAGCCCGCTTGCACTTTGAGCTYAATTATCACAGTTTATTCAAGAGACATCGACTAATTTTCAATTAGTAGATTATTTATCATGATATCACTCATATTTTGTTAGTTGAGAGATTCTTGATAGCTTTTATAGAAACCGAGATAATTGAGCTTAAGCGTAGGCTTCTTTTAGATGGGGTATTTTACTTTGGTTGTTGCTAATCTTAAAAATTTCAGATTTTGGGTTTTCAAATTTTCAAACTCCCGATCAACTGCTGAACACATGGTGCGGTTCACCTCCCTATGCGGCACCGGAATTGTTATTAGGTACCTCACTTCTAGGAAACAAGAAAAAAAAATGCATAACCTTTTGCAGGTAACTCGTACGACGGCATGAAAGCTGATATCTGGTCCATGGGTGTGTTGTTATACATTCTCGTGACTGGCGGATTTCCTTTCGGCAGTGAATCAGTAAACGATCTCAAGAGATCCGTTCTCTCTGGCGTCGTTAAGATTCCGTATTGGGTTTCTGTTGGTGAGTGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATTAGGCAAAGATTCGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGTAAAATACCCCATCTAAAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTATTAGGCAAAGATTCGAAAATCAAATTGATTGGTGAGCCTCGTATCATATTTTATCTAATGGAAGCCCGCTTGCACTTTGAGCTCAATTATCACAGTTTATTCAAGAGACATCGACTAATTTTCAATTAGTAGATTATTTATCATGATATCACTCATATTTTGTTAGTTGAGAGATTCTTGATAGCTTTTATAGAAACCGAGATAATTGAGCTTAAGCGTAGGCTTCTTTTAGATGGGGTATTTTACT</canonical_amplicon>
		<polymorphic_amplicon>TTATTAGGCAAAGATTCGAAAATCAAATTGATTGGTGAGCCTCGTATCATATTTTATCTAATGGAAGCCCGCTTGCACTTTGAGCTYAATTATCACAGTTTATTCAAGAGACATCGACTAATTTTCAATTAGTAGATTATTTATCATGATATCACTCATATTTTGTTAGTTGAGAGATTCTTGATAGCTTTTATAGAAACCGAGATAATTGAGCTTAAGCGTAGGCTTCTTTTAGATGGGGTATTTTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20407</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>889386</contig_pos>
        <strand>+</strand>
        <context>TATACATTGT[A/G]AGCGAATACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAGTTCATATTTTCAGATCATGAGGGTTGACAACATGTTATACATTGT</left_flank>
        <right_flank>AGCGAATACTGTAGCACGGGAGAGTTATATGGTAGGAATTAAGCTGAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAATTTCGCGACGGTTCGGATAGCACGGCACAGGATTGCAAAGACCAAGGTTCGTTGTTTAACATAAATCATAGAATTAGAGCAGCTGCTTTTTTGGTTGCATAAAAATTATGATTTTTAATTTATGATTCATTGAGAACAAATCTAGATTACTGTAGTTTTTTCAGCCAAATAGAGAAAAAGTGTTCTTGAAATCCCTCTTAATCCCAGATGTTCAGTGTACTATTTTTGACCTTCATTCTGATTTTCAATCCTTACGAAGAAGTATTACAAAAGACTTTATAATCCTTGAGGATTTTCAGGTGGCAGTGAAAAGTATTGATGTATCAAAACTGGATAAAGAGAACCTGATAAAGCTGGAAAGGGAGGTGAAGATAGTCACAATGATCGACCATCCGCACATTGTCAAATGTTATGAGGTACCGTAATCTGGATCAGAAAAATAGGCTGAAGTTCATATTTTCAGATCATGAGGGTTGACAACATGTTATACATTGTAAGCGAATACTGTAGCACGGGAGAGTTATATGGTAGGAATTAAGCTGAAAAATGCAAAATTGATTTGGAAAAATTTTCAGCTACTCTGATGGGAAAAGGTCGTGTGACAGAGGATATTGCTCGAAAATGGTTTACTGAAACGGCAGCTGCAGTGTCCTATCTTCACAATAAAGGAATAGTGCATCGGGATTTGAAAACGGAGAACATTTTATTAGGCAAAGATTCGAAAATCAAATTGATTGGTGAGCCTCGTATCATATTTTATCTAATGGAAGCCCGCTTGCACTTTGAGCTCAATTATCACAGTTTATTCAAGAGACATCGACTAATTTTCAATTAGTAGATTATTTATCATGATATCACTCATATTTTGTTAGTTGAGAGATTCTTGATAGCTTTTATAGAAACCGAGATAATTGAGCTTAAGCGTAGGCTTCTTTTAGATGGGGTATTTTACTTTGGTTGTTGCTAATCTTAAAAATTTCAGATTTTGGGTTTTCA</canonical>
            <polymorphic>GGAATTTCGCGACGGTTCGGATAGCACGGCACAGGATTGCAAAGACCAAGGTTCGTTGTTTAACATAAATCATAGAATTAGAGCAGCTGCTTTTTTGGTTGCATAAAAATTATGATTTTTAATTTATGATTCATTGAGAACAAATCTAGATTACTGTAGTTTTTTCAGCCAAATAGAGAAAAAGTGTTCTTGAAATCCCTCTTAATCCCAGATGTTCAGTGTACTATTTTTGACCTTCATTCTGATTTTCAATCCTTACGAAGAAGTATTACAAAAGACTTTATAATCCTTGAGGATTTTCAGGTGGCAGTGAAAAGTATTGATGTATCAAAACTGGATAAAGAGAACCTGATAAAGCTGGAAAGGGAGGTGAAGATAGTCACAATGATCGACCATCCGCACATTGTCAAATGTTATGAGGTACCGTAATCTGGATCAGAAAAATAGGCTGAAGTTCATATTTTCAGATCATGAGGGTTGACAACATGTTATACATTGTRAGCGAATACTGTAGCACGGGAGAGTTATATGGTAGGAATTAAGCTGAAAAATGCAAAATTGATTTGGAAAAATTTTCAGCTACTCTGATGGGAAAAGGTCGTGTGACAGAGGATATTGCTCGAAAATGGTTTACTGAAACGGCAGCTGCAGTGTCCTATCTTCACAATAAAGGAATAGTGCATCGGGATTTGAAAACGGAGAACATTTTATTAGGCAAAGATTCGAAAATCAAATTGATTGGTGAGCCTCGTATCATATTTTATCTAATGGAAGCCCGCTTGCACTTTGAGCTCAATTATCACAGTTTATTCAAGAGACATCGACTAATTTTCAATTAGTAGATTATTTATCATGATATCACTCATATTTTGTTAGTTGAGAGATTCTTGATAGCTTTTATAGAAACCGAGATAATTGAGCTTAAGCGTAGGCTTCTTTTAGATGGGGTATTTTACTTTGGTTGTTGCTAATCTTAAAAATTTCAGATTTTGGGTTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTAATCTGGATCAGAAAAATAG</pcr_primer_p1>
		<pcr_primer_p2>TCCTTTATTGTGAAGATAGGACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTAATCTGGATCAGAAAAATAGGCTGAAGTTCATATTTTCAGATCATGAGGGTTGACAACATGTTATACATTGTAAGCGAATACTGTAGCACGGGAGAGTTATATGGTAGGAATTAAGCTGAAAAATGCAAAATTGATTTGGAAAAATTTTCAGCTACTCTGATGGGAAAAGGTCGTGTGACAGAGGATATTGCTCGAAAATGGTTTACTGAAACGGCAGCTGCAGTGTCCTATCTTCACAATAAAGGA</canonical_amplicon>
		<polymorphic_amplicon>CGTAATCTGGATCAGAAAAATAGGCTGAAGTTCATATTTTCAGATCATGAGGGTTGACAACATGTTATACATTGTRAGCGAATACTGTAGCACGGGAGAGTTATATGGTAGGAATTAAGCTGAAAAATGCAAAATTGATTTGGAAAAATTTTCAGCTACTCTGATGGGAAAAGGTCGTGTGACAGAGGATATTGCTCGAAAATGGTTTACTGAAACGGCAGCTGCAGTGTCCTATCTTCACAATAAAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20408</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>901878</contig_pos>
        <strand>+</strand>
        <context>TTTTGCATCA[G/T]CCCAGATTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATTTCAAATACGATCCAATTTTCCCAGTTCGTGGTGAGTTTTGCATCA</left_flank>
        <right_flank>CCCAGATTCCATTTGTTGCTCACATGTCATTTTGAAATAGTTGACCTGTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACTTTTTTCGCCGTTTGATTTCTTTGCTCTCTCAAGGTCCATATATCATTAATATCGTTAATTTTTTTCTGGCGCCACTCGAACTAACCAAACACGGAACAAAAATGGTTAACTGGTCTTCGAATGTCGATGAAAGGTATATTTACCTGGTGTGGCTCAGCTATCAAGGCTTCTAGCATCTAGAACATGCTGACAGCAATTAGAAAATTAATACTATGTCTGAAATTTCTGAAAATTCCAGAGTCTTCGTCAACAGATCTCTCCGATTGGAGAAGATCACTCATTTTGGGTTCGATATGGACTACACCCTAGTTCGTGAGTTGCTCATTTTTAGTTCCCAAATCTTAAAAAATTATTTTTCAGAGTACAAGACTCCAGATATGGAGTACCTCGCATTCAACATGGCCGTTCAACGCTTGGTAGACACTGGATATCCAGAGGAAATCTTAAATTTCAAATACGATCCAATTTTCCCAGTTCGTGGTGAGTTTTGCATCAGCCCAGATTCCATTTGTTGCTCACATGTCATTTTGAAATAGTTGACCTGTCTGCCAATCCAATTAAAATGGAATGACAGATCATGCGAAACGCCATAAACTTTTGTATTCTGGTTTAGGGAACAAGATTGCAATCTGAATTTTTTATGGTTGAAACAAAAAAAAACTTCTGCGGGATGTGTGACCGTCATATGTCTAAAAACAGTCGTCGTAAATCTTTATCTTATCGTGAACGACATCTTGCGGTTTTCCTTGACATAGAACTTGAATACGACGAATTTTATTGGTAGGAGAGGGAAAGCGGCGACCTCGGTCTTCAAGCCTAATCCGAAGAAAAAATTGCATAAAAGTTCATCGAGGTGTGTGTAATCTTCATCTAATCGGAGGGTAAGCGGGGTGTAAGATGGTATTAGGGGTGGAAAAGATAGTGGACAAATCGTCTTAAAAAAATACTATTCCCAATTTTTTCTCAGGTCTCTGGTTTGAATTCCAATATGGTAAC</canonical>
            <polymorphic>CACTTTTTTCGCCGTTTGATTTCTTTGCTCTCTCAAGGTCCATATATCATTAATATCGTTAATTTTTTTCTGGCGCCACTCGAACTAACCAAACACGGAACAAAAATGGTTAACTGGTCTTCGAATGTCGATGAAAGGTATATTTACCTGGTGTGGCTCAGCTATCAAGGCTTCTAGCATCTAGAACATGCTGACAGCAATTAGAAAATTAATACTATGTCTGAAATTTCTGAAAATTCCAGAGTCTTCGTCAACAGATCTCTCCGATTGGAGAAGATCACTCATTTTGGGTTCGATATGGACTACACCCTAGTTCGTGAGTTGCTCATTTTTAGTTCCCAAATCTTAAAAAATTATTTTTCAGAGTACAAGACTCCAGATATGGAGTACCTCGCATTCAACATGGCCGTTCAACGCTTGGTAGACACTGGATATCCAGAGGAAATCTTAAATTTCAAATACGATCCAATTTTCCCAGTTCGTGGTGAGTTTTGCATCAKCCCAGATTCCATTTGTTGCTCACATGTCATTTTGAAATAGTTGACCTGTCTGCCAATCCAATTAAAATGGAATGACAGATCATGCGAAACGCCATAAACTTTTGTATTCTGGTTTAGGGAACAAGATTGCAATCTGAATTTTTTATGGTTGAAACAAAAAAAAACTTCTGCGGGATGTGTGACCGTCATATGTCTAAAAACAGTCGTCGTAAATCTTTATCTTATCGTGAACGACATCTTGCGGTTTTCCTTGACATAGAACTTGAATACGACGAATTTTATTGGTAGGAGAGGGAAAGCGGCGACCTCGGTCTTCAAGCCTAATCCGAAGAAAAAATTGCATAAAAGTTCATCGAGGTGTGTGTAATCTTCATCTAATCGGAGGGTAAGCGGGGTGTAAGATGGTATTAGGGGTGGAAAAGATAGTGGACAAATCGTCTTAAAAAAATACTATTCCCAATTTTTTCTCAGGTCTCTGGTTTGAATTCCAATATGGTAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>319 236 181 156 94 9 5</canonical_bands>
                <polymorphic_bands>413 236 181 156 9 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAGTACAAGACTCCAGAT</pcr_primer_p1>
		<pcr_primer_p2>ATACAAAAGTTTATGGCGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAGTACAAGACTCCAGATATGGAGTACCTCGCATTCAACATGGCCGTTCAACGCTTGGTAGACACTGGATATCCAGAGGAAATCTTAAATTTCAAATACGATCCAATTTTCCCAGTTCGTGGTGAGTTTTGCATCAGCCCAGATTCCATTTGTTGCTCACATGTCATTTTGAAATAGTTGACCTGTCTGCCAATCCAATTAAAATGGAATGACAGATCATGCGAAACGCCATAAACTTTTGTAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAGTACAAGACTCCAGATATGGAGTACCTCGCATTCAACATGGCCGTTCAACGCTTGGTAGACACTGGATATCCAGAGGAAATCTTAAATTTCAAATACGATCCAATTTTCCCAGTTCGTGGTGAGTTTTGCATCAKCCCAGATTCCATTTGTTGCTCACATGTCATTTTGAAATAGTTGACCTGTCTGCCAATCCAATTAAAATGGAATGACAGATCATGCGAAACGCCATAAACTTTTGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20409</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>904169</contig_pos>
        <strand>+</strand>
        <context>CTTATATAGG[C/T]GCCCACTTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCGAGCACACCGCTTAAACTCATTGGACCTATTAGTTAGCTTATATAGG</left_flank>
        <right_flank>GCCCACTTGTTTTCCCACTGCTTTTTTTTTCTTCCAACGCTATTTTTTCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATGGCAAATTTCTATTTTCAGATACGCTGACGTCTACGCATCCTCCTGTTACAATCTGGTCCACTACCCATCGTTCTACTATTTCCGCGCTCCAATGAAGTGCATGCCTCACGAGTTGACTGTGGACCATGCCTCCACCCTGAGATCCAGATCCAACACCCTGGAACGTCAACAAAGTGTGGGACAACAGGTTCGCGGATGGAACAAGAAGACGTTGAACGACCAGGAGACGTTCTGTCATGAAGAAGAAGAGGATGAGGATCAAACAAATAGCAGCAGCAGTGATGGAGAGGTGAGAGGAGGATTTTGCAGAAACTAATTTGGAATGCAATGTTGTTTCAGGCGCCGAAGCGTGAACGCACCAAGTCGGGCAGCGACGAATCGTCGAACGCTGGCGATGTTCATGTGGAGCCACACCAAGATGTTGTCACTCCAGCTCCTGCATTTGTCGAGCACACCGCTTAAACTCATTGGACCTATTAGTTAGCTTATATAGGCGCCCACTTGTTTTCCCACTGCTTTTTTTTTCTTCCAACGCTATTTTTTCATGTCTAATTTCGAATTGACTCCTGCGCTTTAACTCACATAATGTACCCTTCTTCCTTCCTCCATGAATTCTATTCAACACAATTCTATACACTCTTTTTCTTCTTCCTCACCCGACCACGAGCCTTATTTTTGAACTTGTTCTCTTTTGAAGACCAACTCCCCACCGAACGTGTGTAACATCATTAAACTTCATTCACTGAAAAAAAAAATGCTTTTCATTCCTTTTTCCCTTTTTGTTGAGCAAATAAAACCCCCATAGTTTTGTATTGTAATTCAAATTCTATATTATAGTTCAGCTTTTGAATAAATAAATTTCCTTCAATGCCGATGTTATAATCCCACCTGTCCCATGAAGGAACGTGCCTATGCAGGTCATAAGAGAAAATGGAAAAAATAATAAAGAGAAAGTGATTAATTTGTAGGCCCAACAAAATCGGATTTCGAGGTAA</canonical>
            <polymorphic>AAATGGCAAATTTCTATTTTCAGATACGCTGACGTCTACGCATCCTCCTGTTACAATCTGGTCCACTACCCATCGTTCTACTATTTCCGCGCTCCAATGAAGTGCATGCCTCACGAGTTGACTGTGGACCATGCCTCCACCCTGAGATCCAGATCCAACACCCTGGAACGTCAACAAAGTGTGGGACAACAGGTTCGCGGATGGAACAAGAAGACGTTGAACGACCAGGAGACGTTCTGTCATGAAGAAGAAGAGGATGAGGATCAAACAAATAGCAGCAGCAGTGATGGAGAGGTGAGAGGAGGATTTTGCAGAAACTAATTTGGAATGCAATGTTGTTTCAGGCGCCGAAGCGTGAACGCACCAAGTCGGGCAGCGACGAATCGTCGAACGCTGGCGATGTTCATGTGGAGCCACACCAAGATGTTGTCACTCCAGCTCCTGCATTTGTCGAGCACACCGCTTAAACTCATTGGACCTATTAGTTAGCTTATATAGGYGCCCACTTGTTTTCCCACTGCTTTTTTTTTCTTCCAACGCTATTTTTTCATGTCTAATTTCGAATTGACTCCTGCGCTTTAACTCACATAATGTACCCTTCTTCCTTCCTCCATGAATTCTATTCAACACAATTCTATACACTCTTTTTCTTCTTCCTCACCCGACCACGAGCCTTATTTTTGAACTTGTTCTCTTTTGAAGACCAACTCCCCACCGAACGTGTGTAACATCATTAAACTTCATTCACTGAAAAAAAAAATGCTTTTCATTCCTTTTTCCCTTTTTGTTGAGCAAATAAAACCCCCATAGTTTTGTATTGTAATTCAAATTCTATATTATAGTTCAGCTTTTGAATAAATAAATTTCCTTCAATGCCGATGTTATAATCCCACCTGTCCCATGAAGGAACGTGCCTATGCAGGTCATAAGAGAAAATGGAAAAAATAATAAAGAGAAAGTGATTAATTTGTAGGCCCAACAAAATCGGATTTCGAGGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>502 344 154</canonical_bands>
                <polymorphic_bands>656 344</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>501 313 154 32</canonical_bands>
                <polymorphic_bands>655 313 32</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>424 256 154 91 75</canonical_bands>
                <polymorphic_bands>424 256 229 91</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCGCC</site>
                <isoschizomers>
                    <enzyme>BbeI</enzyme>
                    <enzyme>EgeI</enzyme>
                    <enzyme>EheI</enzyme>
                    <enzyme>KasI</enzyme>
                    <enzyme>Mly113I</enzyme>
                    <enzyme>NarI</enzyme>
                    <enzyme>SfoI</enzyme>
                </isoschizomers>
                <canonical_bands>498 348 154</canonical_bands>
                <polymorphic_bands>652 348</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>498 348 154</canonical_bands>
                <polymorphic_bands>652 348</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTGGAATGCAATGTTGT</pcr_primer_p1>
		<pcr_primer_p2>AATTCGAAATTAGACATGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATTTGGAATGCAATGTTGTTTCAGGCGCCGAAGCGTGAACGCACCAAGTCGGGCAGCGACGAATCGTCGAACGCTGGCGATGTTCATGTGGAGCCACACCAAGATGTTGTCACTCCAGCTCCTGCATTTGTCGAGCACACCGCTTAAACTCATTGGACCTATTAGTTAGCTTATATAGGCGCCCACTTGTTTTCCCACTGCTTTTTTTTTCTTCCAACGCTATTTTTTCATGTCTAATTTCGAATT</canonical_amplicon>
		<polymorphic_amplicon>AATTTGGAATGCAATGTTGTTTCAGGCGCCGAAGCGTGAACGCACCAAGTCGGGCAGCGACGAATCGTCGAACGCTGGCGATGTTCATGTGGAGCCACACCAAGATGTTGTCACTCCAGCTCCTGCATTTGTCGAGCACACCGCTTAAACTCATTGGACCTATTAGTTAGCTTATATAGGYGCCCACTTGTTTTCCCACTGCTTTTTTTTTCTTCCAACGCTATTTTTTCATGTCTAATTTCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20410</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>903864</contig_pos>
        <strand>+</strand>
        <context>GACAACAGGT[C/T]CGCGGATGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGATCCAGATCCAACACCCTGGAACGTCAACAAAGTGTGGGACAACAGGT</left_flank>
        <right_flank>CGCGGATGGAACAAGAAGACGTTGAACGACCAGGAGACGTTCTGTCATGA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTCAAGGATATCGTTGATCAGATTAGAGTGAGTGCATGGTTTCCGGGAGAGAACGGAAACTGGAGACAAATCTGATAATGCGATTTTTTTCAGAAGCTCACAAACCAAATGGATGAGGAGTATGGATGCTTGGGAAGTCTTTTCAGAACCGGGGGAAGAACCACTTTCTTCGCAGCTCAAGTCGAGAGGTGATCTATGATGTTATTTCTAAAATAATCCCTACATTCGAATTAATGATATCAGTGATATCAGTTTCCGGTTCATTGAATTCGCTTAGAAACATACATGAATATAATTATTCGAAAATGGCAAATTTCTATTTTCAGATACGCTGACGTCTACGCATCCTCCTGTTACAATCTGGTCCACTACCCATCGTTCTACTATTTCCGCGCTCCAATGAAGTGCATGCCTCACGAGTTGACTGTGGACCATGCCTCCACCCTGAGATCCAGATCCAACACCCTGGAACGTCAACAAAGTGTGGGACAACAGGTTCGCGGATGGAACAAGAAGACGTTGAACGACCAGGAGACGTTCTGTCATGAAGAAGAAGAGGATGAGGATCAAACAAATAGCAGCAGCAGTGATGGAGAGGTGAGAGGAGGATTTTGCAGAAACTAATTTGGAATGCAATGTTGTTTCAGGCGCCGAAGCGTGAACGCACCAAGTCGGGCAGCGACGAATCGTCGAACGCTGGCGATGTTCATGTGGAGCCACACCAAGATGTTGTCACTCCAGCTCCTGCATTTGTCGAGCACACCGCTTAAACTCATTGGACCTATTAGTTAGCTTATATAGGCGCCCACTTGTTTTCCCACTGCTTTTTTTTTCTTCCAACGCTATTTTTTCATGTCTAATTTCGAATTGACTCCTGCGCTTTAACTCACATAATGTACCCTTCTTCCTTCCTCCATGAATTCTATTCAACACAATTCTATACACTCTTTTTCTTCTTCCTCACCCGACCACGAGCCTTATTTTTGAACTTGTTCTCT</canonical>
            <polymorphic>TTGTCAAGGATATCGTTGATCAGATTAGAGTGAGTGCATGGTTTCCGGGAGAGAACGGAAACTGGAGACAAATCTGATAATGCGATTTTTTTCAGAAGCTCACAAACCAAATGGATGAGGAGTATGGATGCTTGGGAAGTCTTTTCAGAACCGGGGGAAGAACCACTTTCTTCGCAGCTCAAGTCGAGAGGTGATCTATGATGTTATTTCTAAAATAATCCCTACATTCGAATTAATGATATCAGTGATATCAGTTTCCGGTTCATTGAATTCGCTTAGAAACATACATGAATATAATTATTCGAAAATGGCAAATTTCTATTTTCAGATACGCTGACGTCTACGCATCCTCCTGTTACAATCTGGTCCACTACCCATCGTTCTACTATTTCCGCGCTCCAATGAAGTGCATGCCTCACGAGTTGACTGTGGACCATGCCTCCACCCTGAGATCCAGATCCAACACCCTGGAACGTCAACAAAGTGTGGGACAACAGGTYCGCGGATGGAACAAGAAGACGTTGAACGACCAGGAGACGTTCTGTCATGAAGAAGAAGAGGATGAGGATCAAACAAATAGCAGCAGCAGTGATGGAGAGGTGAGAGGAGGATTTTGCAGAAACTAATTTGGAATGCAATGTTGTTTCAGGCGCCGAAGCGTGAACGCACCAAGTCGGGCAGCGACGAATCGTCGAACGCTGGCGATGTTCATGTGGAGCCACACCAAGATGTTGTCACTCCAGCTCCTGCATTTGTCGAGCACACCGCTTAAACTCATTGGACCTATTAGTTAGCTTATATAGGCGCCCACTTGTTTTCCCACTGCTTTTTTTTTCTTCCAACGCTATTTTTTCATGTCTAATTTCGAATTGACTCCTGCGCTTTAACTCACATAATGTACCCTTCTTCCTTCCTCCATGAATTCTATTCAACACAATTCTATACACTCTTTTTCTTCTTCCTCACCCGACCACGAGCCTTATTTTTGAACTTGTTCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTATTTTCAGATACGCTGAC</pcr_primer_p1>
		<pcr_primer_p2>CCTCATCCTCTTCTTCTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTCTATTTTCAGATACGCTGACGTCTACGCATCCTCCTGTTACAATCTGGTCCACTACCCATCGTTCTACTATTTCCGCGCTCCAATGAAGTGCATGCCTCACGAGTTGACTGTGGACCATGCCTCCACCCTGAGATCCAGATCCAACACCCTGGAACGTCAACAAAGTGTGGGACAACAGGTTCGCGGATGGAACAAGAAGACGTTGAACGACCAGGAGACGTTCTGTCATGAAGAAGAAGAGGATGAGG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTATTTTCAGATACGCTGACGTCTACGCATCCTCCTGTTACAATCTGGTCCACTACCCATCGTTCTACTATTTCCGCGCTCCAATGAAGTGCATGCCTCACGAGTTGACTGTGGACCATGCCTCCACCCTGAGATCCAGATCCAACACCCTGGAACGTCAACAAAGTGTGGGACAACAGGTYCGCGGATGGAACAAGAAGACGTTGAACGACCAGGAGACGTTCTGTCATGAAGAAGAAGAGGATGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20411</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>910800</contig_pos>
        <strand></strand>
        <context>ACACTGCGAA[G/A]RCYYTCACAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCCCATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAA</left_flank>
        <right_flank>GCCTTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGC</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGTATCTTATTGACTTGTTTTTCTGTTTTCTTTATTTCCGTTTGAGATTAGTAGTACTGCTTAGGAAGCCTCATGTAATTGAAATCCATACTTTCCCCAAACGACATTCGACTAAAAACTTTGTCAGGGTATCCCATTACCACTGGACATTTTGGATACCAACTTCAACTTTCCTGATATGCGACGTCTTTCGATCGCATCCGCTTCGGCGTTTCTTCTTGTCTTCTCTGTGGATGACGTTACAAGCTTCAAGGAGGTTAGTTACAGTATCCACCGGATTTCCGATCCGCCACCACGGAAATAGACCAAATCAAGCTAATGCGTGAGCAATTTCAGATGTCGGATTTGTGGCAAGAGATTTGCACGCGTCGCTCCGATCTCAACGAGCTGCCAATAGTGGTAGTTGGCAACAAGTGCGACGTGGAGAACAAAAAGGTGAGTGTCGCCCTCCCATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAAGGCCTTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCAAAGGATAATATCCGGATTACTGAGATATTCCGTACCCTGCTCGAGTTGTCCGGATTCCCACGATGCAAAGTGAGCGAGAGAGCGCTGTATAGAAAATATTGGAGGGTTGTTTAGGCTGGAGGCGGTGGATTGGACGATGTCGCTGAGGATGAAGAGACTAAGAATAGTCCCACTATCAGAAGATCGGCTACTGTTCGAGCCAAATCGAGCTCCAAGAGGGAGAGTCGTAGAACTTATCTAGAGGTAGGAGATATGAGCCCTTTATAGGAAAACAGTTGAATATTTGAAAACGTTCAATGTGAATATAATGTATGAGTCAAGAAAATTTAACCACTTTCAGATTATGGGGCTCGGCGGCCAAGTTTGCGATCACTTTGAAAATTTTGGACAGTGCGAAACACACCTAGATTGAAAATGTCTAGTTTTTCAGATATTTAGGGAATTCTAAA</canonical>
            <polymorphic>GTGTATCTTATTGACTTGTTTTTCTGTTTTCTTTATTTCCGTTTGAGATTAGTAGTACTGCTTAGGAAGCCTCATGTAATTGAAATCCATACTTTCCCCAAACGACATTCGACTAAAAACTTTGTCAGGGTATCCCATTACCACTGGACATTTTGGATACCAACTTCAACTTTCCTGATATGCGACGTCTTTCGATCGCATCCGCTTCGGCGTTTCTTCTTGTCTTCTCTGTGGATGACGTTACAAGCTTCAAGGAGGTTAGTTACAGTATCCACCGGATTTCCGATCCGCCACCACGGAAATAGACCAAATCAAGCTAATGCGTGAGCAATTTCAGATGTCGGATTTGTGGCAAGAGATTTGCACGCGTCGCTCCGATCTCAACGAGCTGCCAATAGTGGTAGTTGGCAACAAGTGCGACGTGGAGAACAAAAAGGTGAGTGTCGCCCTCCCATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAARGCCTTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCAAAGGATAATATCCGGATTACTGAGATATTCCGTACCCTGCTCGAGTTGTCCGGATTCCCACGATGCAAAGTGAGCGAGAGAGCGCTGTATAGAAAATATTGGAGGGTTGTTTAGGCTGGAGGCGGTGGATTGGACGATGTCGCTGAGGATGAAGAGACTAAGAATAGTCCCACTATCAGAAGATCGGCTACTGTTCGAGCCAAATCGAGCTCCAAGAGGGAGAGTCGTAGAACTTATCTAGAGGTAGGAGATATGAGCCCTTTATAGGAAAACAGTTGAATATTTGAAAACGTTCAATGTGAATATAATGTATGAGTCAAGAAAATTTAACCACTTTCAGATTATGGGGCTCGGCGGCCAAGTTTGCGATCACTTTGAAAATTTTGGACAGTGCGAAACACACCTAGATTGAAAATGTCTAGTTTTTCAGATATTTAGGGAATTCTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGGCCT</site>
                <isoschizomers>
                    <enzyme>AatI</enzyme>
                    <enzyme>Eco147I</enzyme>
                    <enzyme>PceI</enzyme>
                    <enzyme>SseBI</enzyme>
                    <enzyme>StuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 407 92</canonical_bands>
                <polymorphic_bands>908 92</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>178 155 92 92 72 72 72 69 69 48 41 12 10 10 8</canonical_bands>
                <polymorphic_bands>178 155 92 92 72 72 72 69 69 51 48 12 10 8</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGGAGAACAAAAAGGTGAGT</pcr_primer_p1>
		<pcr_primer_p2>AACAACCCTCCAATATTTTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GTGGAGAACAAAAAGGTGAGTGTCGCCCTCCCATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAAGGCCTTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCAAAGGATAATATCCGGATTACTGAGATATTCCGTACCCTGCTCGAGTTGTCCGGATTCCCACGATGCAAAGTGAGCGAGAGAGCGCTGTATAGAAAATATTGGAGGGTTGTT</canonical_amplicon>
		<polymorphic_amplicon>GTGGAGAACAAAAAGGTGAGTGTCGCCCTCCCATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAARGCCTTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCAAAGGATAATATCCGGATTACTGAGATATTCCGTACCCTGCTCGAGTTGTCCGGATTCCCACGATGCAAAGTGAGCGAGAGAGCGCTGTATAGAAAATATTGGAGGGTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20412</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>910803</contig_pos>
        <strand></strand>
        <context>CTGCGAARRC[C/T]YTCACAAGCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAAGGC</left_flank>
        <right_flank>TTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCTTATTGACTTGTTTTTCTGTTTTCTTTATTTCCGTTTGAGATTAGTAGTACTGCTTAGGAAGCCTCATGTAATTGAAATCCATACTTTCCCCAAACGACATTCGACTAAAAACTTTGTCAGGGTATCCCATTACCACTGGACATTTTGGATACCAACTTCAACTTTCCTGATATGCGACGTCTTTCGATCGCATCCGCTTCGGCGTTTCTTCTTGTCTTCTCTGTGGATGACGTTACAAGCTTCAAGGAGGTTAGTTACAGTATCCACCGGATTTCCGATCCGCCACCACGGAAATAGACCAAATCAAGCTAATGCGTGAGCAATTTCAGATGTCGGATTTGTGGCAAGAGATTTGCACGCGTCGCTCCGATCTCAACGAGCTGCCAATAGTGGTAGTTGGCAACAAGTGCGACGTGGAGAACAAAAAGGTGAGTGTCGCCCTCCCATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAAGGCCTTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCAAAGGATAATATCCGGATTACTGAGATATTCCGTACCCTGCTCGAGTTGTCCGGATTCCCACGATGCAAAGTGAGCGAGAGAGCGCTGTATAGAAAATATTGGAGGGTTGTTTAGGCTGGAGGCGGTGGATTGGACGATGTCGCTGAGGATGAAGAGACTAAGAATAGTCCCACTATCAGAAGATCGGCTACTGTTCGAGCCAAATCGAGCTCCAAGAGGGAGAGTCGTAGAACTTATCTAGAGGTAGGAGATATGAGCCCTTTATAGGAAAACAGTTGAATATTTGAAAACGTTCAATGTGAATATAATGTATGAGTCAAGAAAATTTAACCACTTTCAGATTATGGGGCTCGGCGGCCAAGTTTGCGATCACTTTGAAAATTTTGGACAGTGCGAAACACACCTAGATTGAAAATGTCTAGTTTTTCAGATATTTAGGGAATTCTAAAAGA</canonical>
            <polymorphic>TATCTTATTGACTTGTTTTTCTGTTTTCTTTATTTCCGTTTGAGATTAGTAGTACTGCTTAGGAAGCCTCATGTAATTGAAATCCATACTTTCCCCAAACGACATTCGACTAAAAACTTTGTCAGGGTATCCCATTACCACTGGACATTTTGGATACCAACTTCAACTTTCCTGATATGCGACGTCTTTCGATCGCATCCGCTTCGGCGTTTCTTCTTGTCTTCTCTGTGGATGACGTTACAAGCTTCAAGGAGGTTAGTTACAGTATCCACCGGATTTCCGATCCGCCACCACGGAAATAGACCAAATCAAGCTAATGCGTGAGCAATTTCAGATGTCGGATTTGTGGCAAGAGATTTGCACGCGTCGCTCCGATCTCAACGAGCTGCCAATAGTGGTAGTTGGCAACAAGTGCGACGTGGAGAACAAAAAGGTGAGTGTCGCCCTCCCATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAAGGCYTTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCAAAGGATAATATCCGGATTACTGAGATATTCCGTACCCTGCTCGAGTTGTCCGGATTCCCACGATGCAAAGTGAGCGAGAGAGCGCTGTATAGAAAATATTGGAGGGTTGTTTAGGCTGGAGGCGGTGGATTGGACGATGTCGCTGAGGATGAAGAGACTAAGAATAGTCCCACTATCAGAAGATCGGCTACTGTTCGAGCCAAATCGAGCTCCAAGAGGGAGAGTCGTAGAACTTATCTAGAGGTAGGAGATATGAGCCCTTTATAGGAAAACAGTTGAATATTTGAAAACGTTCAATGTGAATATAATGTATGAGTCAAGAAAATTTAACCACTTTCAGATTATGGGGCTCGGCGGCCAAGTTTGCGATCACTTTGAAAATTTTGGACAGTGCGAAACACACCTAGATTGAAAATGTCTAGTTTTTCAGATATTTAGGGAATTCTAAAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGGCCT</site>
                <isoschizomers>
                    <enzyme>AatI</enzyme>
                    <enzyme>Eco147I</enzyme>
                    <enzyme>PceI</enzyme>
                    <enzyme>SseBI</enzyme>
                    <enzyme>StuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>498 407 95</canonical_bands>
                <polymorphic_bands>905 95</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>178 155 95 92 72 72 72 69 66 48 41 12 10 10 8</canonical_bands>
                <polymorphic_bands>178 155 95 92 72 72 72 69 66 51 48 12 10 8</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGGAGAACAAAAAGGTGAGT</pcr_primer_p1>
		<pcr_primer_p2>AACAACCCTCCAATATTTTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GTGGAGAACAAAAAGGTGAGTGTCGCCCTCCCATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAAGGCCTTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCAAAGGATAATATCCGGATTACTGAGATATTCCGTACCCTGCTCGAGTTGTCCGGATTCCCACGATGCAAAGTGAGCGAGAGAGCGCTGTATAGAAAATATTGGAGGGTTGTT</canonical_amplicon>
		<polymorphic_amplicon>GTGGAGAACAAAAAGGTGAGTGTCGCCCTCCCATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAAGGCYTTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCAAAGGATAATATCCGGATTACTGAGATATTCCGTACCCTGCTCGAGTTGTCCGGATTCCCACGATGCAAAGTGAGCGAGAGAGCGCTGTATAGAAAATATTGGAGGGTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20413</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>910887</contig_pos>
        <strand>+</strand>
        <context>TATTCCGTAC[C/T]CTGCTCGAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTGAGGTGTCGGCAAAGGATAATATCCGGATTACTGAGATATTCCGTAC</left_flank>
        <right_flank>CTGCTCGAGTTGTCCGGATTCCCACGATGCAAAGTGAGCGAGAGAGCGCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATACTTTCCCCAAACGACATTCGACTAAAAACTTTGTCAGGGTATCCCATTACCACTGGACATTTTGGATACCAACTTCAACTTTCCTGATATGCGACGTCTTTCGATCGCATCCGCTTCGGCGTTTCTTCTTGTCTTCTCTGTGGATGACGTTACAAGCTTCAAGGAGGTTAGTTACAGTATCCACCGGATTTCCGATCCGCCACCACGGAAATAGACCAAATCAAGCTAATGCGTGAGCAATTTCAGATGTCGGATTTGTGGCAAGAGATTTGCACGCGTCGCTCCGATCTCAACGAGCTGCCAATAGTGGTAGTTGGCAACAAGTGCGACGTGGAGAACAAAAAGGTGAGTGTCGCCCTCCCATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAAGGCCTTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCAAAGGATAATATCCGGATTACTGAGATATTCCGTACCCTGCTCGAGTTGTCCGGATTCCCACGATGCAAAGTGAGCGAGAGAGCGCTGTATAGAAAATATTGGAGGGTTGTTTAGGCTGGAGGCGGTGGATTGGACGATGTCGCTGAGGATGAAGAGACTAAGAATAGTCCCACTATCAGAAGATCGGCTACTGTTCGAGCCAAATCGAGCTCCAAGAGGGAGAGTCGTAGAACTTATCTAGAGGTAGGAGATATGAGCCCTTTATAGGAAAACAGTTGAATATTTGAAAACGTTCAATGTGAATATAATGTATGAGTCAAGAAAATTTAACCACTTTCAGATTATGGGGCTCGGCGGCCAAGTTTGCGATCACTTTGAAAATTTTGGACAGTGCGAAACACACCTAGATTGAAAATGTCTAGTTTTTCAGATATTTAGGGAATTCTAAAAGACACACTCGTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTACAGAATTCCCCAAATAGCTGAGAAACTAGTAATTTTCAAAAA</canonical>
            <polymorphic>CATACTTTCCCCAAACGACATTCGACTAAAAACTTTGTCAGGGTATCCCATTACCACTGGACATTTTGGATACCAACTTCAACTTTCCTGATATGCGACGTCTTTCGATCGCATCCGCTTCGGCGTTTCTTCTTGTCTTCTCTGTGGATGACGTTACAAGCTTCAAGGAGGTTAGTTACAGTATCCACCGGATTTCCGATCCGCCACCACGGAAATAGACCAAATCAAGCTAATGCGTGAGCAATTTCAGATGTCGGATTTGTGGCAAGAGATTTGCACGCGTCGCTCCGATCTCAACGAGCTGCCAATAGTGGTAGTTGGCAACAAGTGCGACGTGGAGAACAAAAAGGTGAGTGTCGCCCTCCCATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAAGGCCTTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCAAAGGATAATATCCGGATTACTGAGATATTCCGTACYCTGCTCGAGTTGTCCGGATTCCCACGATGCAAAGTGAGCGAGAGAGCGCTGTATAGAAAATATTGGAGGGTTGTTTAGGCTGGAGGCGGTGGATTGGACGATGTCGCTGAGGATGAAGAGACTAAGAATAGTCCCACTATCAGAAGATCGGCTACTGTTCGAGCCAAATCGAGCTCCAAGAGGGAGAGTCGTAGAACTTATCTAGAGGTAGGAGATATGAGCCCTTTATAGGAAAACAGTTGAATATTTGAAAACGTTCAATGTGAATATAATGTATGAGTCAAGAAAATTTAACCACTTTCAGATTATGGGGCTCGGCGGCCAAGTTTGCGATCACTTTGAAAATTTTGGACAGTGCGAAACACACCTAGATTGAAAATGTCTAGTTTTTCAGATATTTAGGGAATTCTAAAAGACACACTCGTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTACAGAATTCCCCAAATAGCTGAGAAACTAGTAATTTTCAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGAGAACAAAAAGGTGAGT</pcr_primer_p1>
		<pcr_primer_p2>AACAACCCTCCAATATTTTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GTGGAGAACAAAAAGGTGAGTGTCGCCCTCCCATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAAGGCCTTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCAAAGGATAATATCCGGATTACTGAGATATTCCGTACCCTGCTCGAGTTGTCCGGATTCCCACGATGCAAAGTGAGCGAGAGAGCGCTGTATAGAAAATATTGGAGGGTTGTT</canonical_amplicon>
		<polymorphic_amplicon>GTGGAGAACAAAAAGGTGAGTGTCGCCCTCCCATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAAGGCCTTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCAAAGGATAATATCCGGATTACTGAGATATTCCGTACYCTGCTCGAGTTGTCCGGATTCCCACGATGCAAAGTGAGCGAGAGAGCGCTGTATAGAAAATATTGGAGGGTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20414</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>911159</contig_pos>
        <strand>+</strand>
        <context>TGTGAATATA[A/C]TGTATGAGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCCTTTATAGGAAAACAGTTGAATATTTGAAAACGTTCAATGTGAATATA</left_flank>
        <right_flank>TGTATGAGTCAAGAAAATTTAACCACTTTCAGATTATGGGGCTCGGCGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGCACGCGTCGCTCCGATCTCAACGAGCTGCCAATAGTGGTAGTTGGCAACAAGTGCGACGTGGAGAACAAAAAGGTGAGTGTCGCCCTCCCATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAAGGCCTTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCAAAGGATAATATCCGGATTACTGAGATATTCCGTACCCTGCTCGAGTTGTCCGGATTCCCACGATGCAAAGTGAGCGAGAGAGCGCTGTATAGAAAATATTGGAGGGTTGTTTAGGCTGGAGGCGGTGGATTGGACGATGTCGCTGAGGATGAAGAGACTAAGAATAGTCCCACTATCAGAAGATCGGCTACTGTTCGAGCCAAATCGAGCTCCAAGAGGGAGAGTCGTAGAACTTATCTAGAGGTAGGAGATATGAGCCCTTTATAGGAAAACAGTTGAATATTTGAAAACGTTCAATGTGAATATAATGTATGAGTCAAGAAAATTTAACCACTTTCAGATTATGGGGCTCGGCGGCCAAGTTTGCGATCACTTTGAAAATTTTGGACAGTGCGAAACACACCTAGATTGAAAATGTCTAGTTTTTCAGATATTTAGGGAATTCTAAAAGACACACTCGTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTACAGAATTCCCCAAATAGCTGAGAAACTAGTAATTTTCAAAAACCCCTGTGAGTGCAAAGTTTTCAATCTAGGCCTGTTTTGCATCCTCTAGAGTTTTCAAAGAGATCGGAAATTTGACAAATGAGCTCCAGACTCCTGAAAATGGCCATAATGACCGAAGATTAACTGAAAACACGTTTTTTTGTATATTTTATTGACCGGTACTATTTTGAAGGAACACATGGCAAAATTGTTTCCATTGTTAGGACTTCCTTGTGTTTATGATTTTTTTTCACTAAATCAAAATTTCGTAACATTCAAGAAGCCTAAATATG</canonical>
            <polymorphic>TTTGCACGCGTCGCTCCGATCTCAACGAGCTGCCAATAGTGGTAGTTGGCAACAAGTGCGACGTGGAGAACAAAAAGGTGAGTGTCGCCCTCCCATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAAGGCCTTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCAAAGGATAATATCCGGATTACTGAGATATTCCGTACCCTGCTCGAGTTGTCCGGATTCCCACGATGCAAAGTGAGCGAGAGAGCGCTGTATAGAAAATATTGGAGGGTTGTTTAGGCTGGAGGCGGTGGATTGGACGATGTCGCTGAGGATGAAGAGACTAAGAATAGTCCCACTATCAGAAGATCGGCTACTGTTCGAGCCAAATCGAGCTCCAAGAGGGAGAGTCGTAGAACTTATCTAGAGGTAGGAGATATGAGCCCTTTATAGGAAAACAGTTGAATATTTGAAAACGTTCAATGTGAATATAMTGTATGAGTCAAGAAAATTTAACCACTTTCAGATTATGGGGCTCGGCGGCCAAGTTTGCGATCACTTTGAAAATTTTGGACAGTGCGAAACACACCTAGATTGAAAATGTCTAGTTTTTCAGATATTTAGGGAATTCTAAAAGACACACTCGTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTACAGAATTCCCCAAATAGCTGAGAAACTAGTAATTTTCAAAAACCCCTGTGAGTGCAAAGTTTTCAATCTAGGCCTGTTTTGCATCCTCTAGAGTTTTCAAAGAGATCGGAAATTTGACAAATGAGCTCCAGACTCCTGAAAATGGCCATAATGACCGAAGATTAACTGAAAACACGTTTTTTTGTATATTTTATTGACCGGTACTATTTTGAAGGAACACATGGCAAAATTGTTTCCATTGTTAGGACTTCCTTGTGTTTATGATTTTTTTTCACTAAATCAAAATTTCGTAACATTCAAGAAGCCTAAATATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGTAGAACTTATCTAGAGGTAGGA</pcr_primer_p1>
		<pcr_primer_p2>AACAATTTTGCCATGTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>504</pcr_amplicon_size>
		<canonical_amplicon>TCGTAGAACTTATCTAGAGGTAGGAGATATGAGCCCTTTATAGGAAAACAGTTGAATATTTGAAAACGTTCAATGTGAATATAATGTATGAGTCAAGAAAATTTAACCACTTTCAGATTATGGGGCTCGGCGGCCAAGTTTGCGATCACTTTGAAAATTTTGGACAGTGCGAAACACACCTAGATTGAAAATGTCTAGTTTTTCAGATATTTAGGGAATTCTAAAAGACACACTCGTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTACAGAATTCCCCAAATAGCTGAGAAACTAGTAATTTTCAAAAACCCCTGTGAGTGCAAAGTTTTCAATCTAGGCCTGTTTTGCATCCTCTAGAGTTTTCAAAGAGATCGGAAATTTGACAAATGAGCTCCAGACTCCTGAAAATGGCCATAATGACCGAAGATTAACTGAAAACACGTTTTTTTGTATATTTTATTGACCGGTACTATTTTGAAGGAACACATGGCAAAATTGTT</canonical_amplicon>
		<polymorphic_amplicon>TCGTAGAACTTATCTAGAGGTAGGAGATATGAGCCCTTTATAGGAAAACAGTTGAATATTTGAAAACGTTCAATGTGAATATAMTGTATGAGTCAAGAAAATTTAACCACTTTCAGATTATGGGGCTCGGCGGCCAAGTTTGCGATCACTTTGAAAATTTTGGACAGTGCGAAACACACCTAGATTGAAAATGTCTAGTTTTTCAGATATTTAGGGAATTCTAAAAGACACACTCGTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTACAGAATTCCCCAAATAGCTGAGAAACTAGTAATTTTCAAAAACCCCTGTGAGTGCAAAGTTTTCAATCTAGGCCTGTTTTGCATCCTCTAGAGTTTTCAAAGAGATCGGAAATTTGACAAATGAGCTCCAGACTCCTGAAAATGGCCATAATGACCGAAGATTAACTGAAAACACGTTTTTTTGTATATTTTATTGACCGGTACTATTTTGAAGGAACACATGGCAAAATTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20415</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>911172</contig_pos>
        <strand></strand>
        <context>TATGAGTCAA[G/A]AAAAwttaac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AACAGTTGAATATTTGAAAACGTTCAATGTGAATATAATGTATGAGTCAA</left_flank>
        <right_flank>AAAATTTAACCACTTTCAGATTATGGGGCTCGGCGGCCAAGTTTGCGATC</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCGATCTCAACGAGCTGCCAATAGTGGTAGTTGGCAACAAGTGCGACGTGGAGAACAAAAAGGTGAGTGTCGCCCTCCCATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAAGGCCTTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCAAAGGATAATATCCGGATTACTGAGATATTCCGTACCCTGCTCGAGTTGTCCGGATTCCCACGATGCAAAGTGAGCGAGAGAGCGCTGTATAGAAAATATTGGAGGGTTGTTTAGGCTGGAGGCGGTGGATTGGACGATGTCGCTGAGGATGAAGAGACTAAGAATAGTCCCACTATCAGAAGATCGGCTACTGTTCGAGCCAAATCGAGCTCCAAGAGGGAGAGTCGTAGAACTTATCTAGAGGTAGGAGATATGAGCCCTTTATAGGAAAACAGTTGAATATTTGAAAACGTTCAATGTGAATATAATGTATGAGTCAAGAAAATTTAACCACTTTCAGATTATGGGGCTCGGCGGCCAAGTTTGCGATCACTTTGAAAATTTTGGACAGTGCGAAACACACCTAGATTGAAAATGTCTAGTTTTTCAGATATTTAGGGAATTCTAAAAGACACACTCGTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTACAGAATTCCCCAAATAGCTGAGAAACTAGTAATTTTCAAAAACCCCTGTGAGTGCAAAGTTTTCAATCTAGGCCTGTTTTGCATCCTCTAGAGTTTTCAAAGAGATCGGAAATTTGACAAATGAGCTCCAGACTCCTGAAAATGGCCATAATGACCGAAGATTAACTGAAAACACGTTTTTTTGTATATTTTATTGACCGGTACTATTTTGAAGGAACACATGGCAAAATTGTTTCCATTGTTAGGACTTCCTTGTGTTTATGATTTTTTTTCACTAAATCAAAATTTCGTAACATTCAAGAAGCCTAAATATGATATCACCTGTCT</canonical>
            <polymorphic>CTCCGATCTCAACGAGCTGCCAATAGTGGTAGTTGGCAACAAGTGCGACGTGGAGAACAAAAAGGTGAGTGTCGCCCTCCCATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAAGGCCTTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCAAAGGATAATATCCGGATTACTGAGATATTCCGTACCCTGCTCGAGTTGTCCGGATTCCCACGATGCAAAGTGAGCGAGAGAGCGCTGTATAGAAAATATTGGAGGGTTGTTTAGGCTGGAGGCGGTGGATTGGACGATGTCGCTGAGGATGAAGAGACTAAGAATAGTCCCACTATCAGAAGATCGGCTACTGTTCGAGCCAAATCGAGCTCCAAGAGGGAGAGTCGTAGAACTTATCTAGAGGTAGGAGATATGAGCCCTTTATAGGAAAACAGTTGAATATTTGAAAACGTTCAATGTGAATATAATGTATGAGTCAARAAAATTTAACCACTTTCAGATTATGGGGCTCGGCGGCCAAGTTTGCGATCACTTTGAAAATTTTGGACAGTGCGAAACACACCTAGATTGAAAATGTCTAGTTTTTCAGATATTTAGGGAATTCTAAAAGACACACTCGTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTACAGAATTCCCCAAATAGCTGAGAAACTAGTAATTTTCAAAAACCCCTGTGAGTGCAAAGTTTTCAATCTAGGCCTGTTTTGCATCCTCTAGAGTTTTCAAAGAGATCGGAAATTTGACAAATGAGCTCCAGACTCCTGAAAATGGCCATAATGACCGAAGATTAACTGAAAACACGTTTTTTTGTATATTTTATTGACCGGTACTATTTTGAAGGAACACATGGCAAAATTGTTTCCATTGTTAGGACTTCCTTGTGTTTATGATTTTTTTTCACTAAATCAAAATTTCGTAACATTCAAGAAGCCTAAATATGATATCACCTGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>264 191 188 163 80 40 38 29 7</canonical_bands>
                <polymorphic_bands>344 191 188 163 40 38 29 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGTAGAACTTATCTAGAGGTAGGA</pcr_primer_p1>
		<pcr_primer_p2>AACAATTTTGCCATGTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>504</pcr_amplicon_size>
		<canonical_amplicon>TCGTAGAACTTATCTAGAGGTAGGAGATATGAGCCCTTTATAGGAAAACAGTTGAATATTTGAAAACGTTCAATGTGAATATAATGTATGAGTCAAGAAAATTTAACCACTTTCAGATTATGGGGCTCGGCGGCCAAGTTTGCGATCACTTTGAAAATTTTGGACAGTGCGAAACACACCTAGATTGAAAATGTCTAGTTTTTCAGATATTTAGGGAATTCTAAAAGACACACTCGTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTACAGAATTCCCCAAATAGCTGAGAAACTAGTAATTTTCAAAAACCCCTGTGAGTGCAAAGTTTTCAATCTAGGCCTGTTTTGCATCCTCTAGAGTTTTCAAAGAGATCGGAAATTTGACAAATGAGCTCCAGACTCCTGAAAATGGCCATAATGACCGAAGATTAACTGAAAACACGTTTTTTTGTATATTTTATTGACCGGTACTATTTTGAAGGAACACATGGCAAAATTGTT</canonical_amplicon>
		<polymorphic_amplicon>TCGTAGAACTTATCTAGAGGTAGGAGATATGAGCCCTTTATAGGAAAACAGTTGAATATTTGAAAACGTTCAATGTGAATATAATGTATGAGTCAARAAAATTTAACCACTTTCAGATTATGGGGCTCGGCGGCCAAGTTTGCGATCACTTTGAAAATTTTGGACAGTGCGAAACACACCTAGATTGAAAATGTCTAGTTTTTCAGATATTTAGGGAATTCTAAAAGACACACTCGTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTACAGAATTCCCCAAATAGCTGAGAAACTAGTAATTTTCAAAAACCCCTGTGAGTGCAAAGTTTTCAATCTAGGCCTGTTTTGCATCCTCTAGAGTTTTCAAAGAGATCGGAAATTTGACAAATGAGCTCCAGACTCCTGAAAATGGCCATAATGACCGAAGATTAACTGAAAACACGTTTTTTTGTATATTTTATTGACCGGTACTATTTTGAAGGAACACATGGCAAAATTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20416</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>912824</contig_pos>
        <strand>+</strand>
        <context>GACRTGAAAA[A/G]RAAAGCGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGACGTGAAAA</left_flank>
        <right_flank>AAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTTTGGCAAAACAAATTATACAATCGCATGTGATGAATATGTGAATCTAAATTTCAGAATTATTGAATTTTTTTGGGAAAATTTTTTTTTGGAAATAAATATTATATTGGGGAGTTTGGGAGTTTTAAGATGCAAAAAAAAGATAAACGGTTATGAAGGACAGAGGGACTTTTAAAAATGTGTGAGAAATAGTTTCAGGAAAACATGAGAAGCTTAGAAATCAAGAATGAGATTATTATAAACAGATTAGTAGGGTGTAAAGGGACATAATGAAAATTTAATGTGTTTGAAACGTTTTAAAATAGAGTTGCAATGTTCAGGTTGGGTTCTATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGTTTCACGACCTACAGGACACAATTAATACAAACGAAAAGGTTTAAAGGGACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGACGTGAAAAAAAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAAAACAGTAGAAGGTTACCATAGCACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGGTATAAAGGGTAATCGGACTTCAAAGAATCAAAAAATAAGATACAAGTATTACAACAAATCCGGTTAATAGAAAAATCAGAATCTTTGGGATTTTTGTATCTTGGTTTGTTTTCTATGTTTTCTACTTCCCGGTTCATTATAATACAAATATAATGATGTCAAAATATACAAAAGGAAAAAAAATCAGAAGTTATTCTTATGCTTCGTTGC</canonical>
            <polymorphic>TATTTTTGGCAAAACAAATTATACAATCGCATGTGATGAATATGTGAATCTAAATTTCAGAATTATTGAATTTTTTTGGGAAAATTTTTTTTTGGAAATAAATATTATATTGGGGAGTTTGGGAGTTTTAAGATGCAAAAAAAAGATAAACGGTTATGAAGGACAGAGGGACTTTTAAAAATGTGTGAGAAATAGTTTCAGGAAAACATGAGAAGCTTAGAAATCAAGAATGAGATTATTATAAACAGATTAGTAGGGTGTAAAGGGACATAATGAAAATTTAATGTGTTTGAAACGTTTTAAAATAGAGTTGCAATGTTCAGGTTGGGTTCTATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGTTTCACGACCTACAGGACACAATTAATACAAACGAAAAGGTTTAAAGGGACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGACGTGAAAARAAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAAAACAGTAGAAGGTTACCATAGCACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGGTATAAAGGGTAATCGGACTTCAAAGAATCAAAAAATAAGATACAAGTATTACAACAAATCCGGTTAATAGAAAAATCAGAATCTTTGGGATTTTTGTATCTTGGTTTGTTTTCTATGTTTTCTACTTCCCGGTTCATTATAATACAAATATAATGATGTCAAAATATACAAAAGGAAAAAAAATCAGAAGTTATTCTTATGCTTCGTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGAGTTGCAATGTTCAGGTT</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTCCCTTTGTTGTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAGAGTTGCAATGTTCAGGTTGGGTTCTATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGTTTCACGACCTACAGGACACAATTAATACAAACGAAAAGGTTTAAAGGGACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGACGTGAAAAAAAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>ATAGAGTTGCAATGTTCAGGTTGGGTTCTATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGTTTCACGACCTACAGGACACAATTAATACAAACGAAAAGGTTTAAAGGGACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGACGTGAAAARAAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20417</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>912817</contig_pos>
        <strand>+</strand>
        <context>ATTTAAGGAC[A/G]TGAAAARRAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGAC</left_flank>
        <right_flank>TGAAAAAAAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCTCATATTTTTGGCAAAACAAATTATACAATCGCATGTGATGAATATGTGAATCTAAATTTCAGAATTATTGAATTTTTTTGGGAAAATTTTTTTTTGGAAATAAATATTATATTGGGGAGTTTGGGAGTTTTAAGATGCAAAAAAAAGATAAACGGTTATGAAGGACAGAGGGACTTTTAAAAATGTGTGAGAAATAGTTTCAGGAAAACATGAGAAGCTTAGAAATCAAGAATGAGATTATTATAAACAGATTAGTAGGGTGTAAAGGGACATAATGAAAATTTAATGTGTTTGAAACGTTTTAAAATAGAGTTGCAATGTTCAGGTTGGGTTCTATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGTTTCACGACCTACAGGACACAATTAATACAAACGAAAAGGTTTAAAGGGACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGACGTGAAAAAAAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAAAACAGTAGAAGGTTACCATAGCACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGGTATAAAGGGTAATCGGACTTCAAAGAATCAAAAAATAAGATACAAGTATTACAACAAATCCGGTTAATAGAAAAATCAGAATCTTTGGGATTTTTGTATCTTGGTTTGTTTTCTATGTTTTCTACTTCCCGGTTCATTATAATACAAATATAATGATGTCAAAATATACAAAAGGAAAAAAAATCAGAAGTTATTCTTATGCT</canonical>
            <polymorphic>CTTCTCATATTTTTGGCAAAACAAATTATACAATCGCATGTGATGAATATGTGAATCTAAATTTCAGAATTATTGAATTTTTTTGGGAAAATTTTTTTTTGGAAATAAATATTATATTGGGGAGTTTGGGAGTTTTAAGATGCAAAAAAAAGATAAACGGTTATGAAGGACAGAGGGACTTTTAAAAATGTGTGAGAAATAGTTTCAGGAAAACATGAGAAGCTTAGAAATCAAGAATGAGATTATTATAAACAGATTAGTAGGGTGTAAAGGGACATAATGAAAATTTAATGTGTTTGAAACGTTTTAAAATAGAGTTGCAATGTTCAGGTTGGGTTCTATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGTTTCACGACCTACAGGACACAATTAATACAAACGAAAAGGTTTAAAGGGACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGACRTGAAAAAAAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAAAACAGTAGAAGGTTACCATAGCACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGGTATAAAGGGTAATCGGACTTCAAAGAATCAAAAAATAAGATACAAGTATTACAACAAATCCGGTTAATAGAAAAATCAGAATCTTTGGGATTTTTGTATCTTGGTTTGTTTTCTATGTTTTCTACTTCCCGGTTCATTATAATACAAATATAATGATGTCAAAATATACAAAAGGAAAAAAAATCAGAAGTTATTCTTATGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>396 139 95 79 73 64 42 34 28 16 14 11 7 2</canonical_bands>
                <polymorphic_bands>396 174 139 73 64 42 34 28 16 14 11 7 2</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>502 302 196</canonical_bands>
                <polymorphic_bands>698 302</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAGAGTTGCAATGTTCAGGTT</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTCCCTTTGTTGTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAGAGTTGCAATGTTCAGGTTGGGTTCTATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGTTTCACGACCTACAGGACACAATTAATACAAACGAAAAGGTTTAAAGGGACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGACGTGAAAAAAAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>ATAGAGTTGCAATGTTCAGGTTGGGTTCTATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGTTTCACGACCTACAGGACACAATTAATACAAACGAAAAGGTTTAAAGGGACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGACRTGAAAAAAAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20418</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>912804</contig_pos>
        <strand>+</strand>
        <context>ATAAGAATAG[C/T]CCATTTAAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAG</left_flank>
        <right_flank>CCATTTAAGGACGTGAAAAAAAAAGCGAAATTTAGTATTTAAAAAATTGG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCATTTTATTTCTTCTCATATTTTTGGCAAAACAAATTATACAATCGCATGTGATGAATATGTGAATCTAAATTTCAGAATTATTGAATTTTTTTGGGAAAATTTTTTTTTGGAAATAAATATTATATTGGGGAGTTTGGGAGTTTTAAGATGCAAAAAAAAGATAAACGGTTATGAAGGACAGAGGGACTTTTAAAAATGTGTGAGAAATAGTTTCAGGAAAACATGAGAAGCTTAGAAATCAAGAATGAGATTATTATAAACAGATTAGTAGGGTGTAAAGGGACATAATGAAAATTTAATGTGTTTGAAACGTTTTAAAATAGAGTTGCAATGTTCAGGTTGGGTTCTATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGTTTCACGACCTACAGGACACAATTAATACAAACGAAAAGGTTTAAAGGGACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGACGTGAAAAAAAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAAAACAGTAGAAGGTTACCATAGCACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGGTATAAAGGGTAATCGGACTTCAAAGAATCAAAAAATAAGATACAAGTATTACAACAAATCCGGTTAATAGAAAAATCAGAATCTTTGGGATTTTTGTATCTTGGTTTGTTTTCTATGTTTTCTACTTCCCGGTTCATTATAATACAAATATAATGATGTCAAAATATACAAAAGGAAAAAAAATCAGAAG</canonical>
            <polymorphic>AACCATTTTATTTCTTCTCATATTTTTGGCAAAACAAATTATACAATCGCATGTGATGAATATGTGAATCTAAATTTCAGAATTATTGAATTTTTTTGGGAAAATTTTTTTTTGGAAATAAATATTATATTGGGGAGTTTGGGAGTTTTAAGATGCAAAAAAAAGATAAACGGTTATGAAGGACAGAGGGACTTTTAAAAATGTGTGAGAAATAGTTTCAGGAAAACATGAGAAGCTTAGAAATCAAGAATGAGATTATTATAAACAGATTAGTAGGGTGTAAAGGGACATAATGAAAATTTAATGTGTTTGAAACGTTTTAAAATAGAGTTGCAATGTTCAGGTTGGGTTCTATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGTTTCACGACCTACAGGACACAATTAATACAAACGAAAAGGTTTAAAGGGACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGYCCATTTAAGGACGTGAAAAAAAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAAAACAGTAGAAGGTTACCATAGCACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGGTATAAAGGGTAATCGGACTTCAAAGAATCAAAAAATAAGATACAAGTATTACAACAAATCCGGTTAATAGAAAAATCAGAATCTTTGGGATTTTTGTATCTTGGTTTGTTTTCTATGTTTTCTACTTCCCGGTTCATTATAATACAAATATAATGATGTCAAAATATACAAAAGGAAAAAAAATCAGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>501 235 142 122</canonical_bands>
                <polymorphic_bands>643 235 122</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAGAGTTGCAATGTTCAGGTT</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTCCCTTTGTTGTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAGAGTTGCAATGTTCAGGTTGGGTTCTATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGTTTCACGACCTACAGGACACAATTAATACAAACGAAAAGGTTTAAAGGGACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGACGTGAAAAAAAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>ATAGAGTTGCAATGTTCAGGTTGGGTTCTATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGTTTCACGACCTACAGGACACAATTAATACAAACGAAAAGGTTTAAAGGGACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGYCCATTTAAGGACGTGAAAAAAAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20419</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>913204</contig_pos>
        <strand>+</strand>
        <context>AATCTTTGGG[A/G]TTTTTGTATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATACAAGTATTACAACAAATCCGGTTAATAGAAAAATCAGAATCTTTGGG</left_flank>
        <right_flank>TTTTTGTATCTTGGTTTGTTTTCTATGTTTTCTACTTCCCGGTTCATTAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTCACGACCTACAGGACACAATTAATACAAACGAAAAGGTTTAAAGGGACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGACGTGAAAAAAAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAAAACAGTAGAAGGTTACCATAGCACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGGTATAAAGGGTAATCGGACTTCAAAGAATCAAAAAATAAGATACAAGTATTACAACAAATCCGGTTAATAGAAAAATCAGAATCTTTGGGATTTTTGTATCTTGGTTTGTTTTCTATGTTTTCTACTTCCCGGTTCATTATAATACAAATATAATGATGTCAAAATATACAAAAGGAAAAAAAATCAGAAGTTATTCTTATGCTTCGTTGCGTTTTGCCTTAACAGCGTTGATAATGATACATGAGAAGATCATAGCAAGAGCCTCAACAAACAAGACAATGATTCCGACGAAGGCGACATAGATGAGGTTGGTTTGAAACGCATTCCAGAAGAGTGTGGCGCATCCTTGCTGTAAATTAGGTTTGTTTACGAGTCAGTGTTTGTTTTTTTCCTTCGGGTTTTCGTCCTCCTAGCTTTTTCAAACATTCACCTGTGAAAGTGTGGCACATTGGCACGAGGTTGGGAAAGCGCCGTAGACCATGTAGTCGCTACAACCCGAGGCTCCACAGCATTGCAGCTGAAATAATAATATTTATTATTCTATCCTGGGAGGTTAATTAATATTCTAGGGAATTTTTGTTTCTCAGAAT</canonical>
            <polymorphic>GTTTCACGACCTACAGGACACAATTAATACAAACGAAAAGGTTTAAAGGGACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGACGTGAAAAAAAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAAAACAGTAGAAGGTTACCATAGCACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGGTATAAAGGGTAATCGGACTTCAAAGAATCAAAAAATAAGATACAAGTATTACAACAAATCCGGTTAATAGAAAAATCAGAATCTTTGGGRTTTTTGTATCTTGGTTTGTTTTCTATGTTTTCTACTTCCCGGTTCATTATAATACAAATATAATGATGTCAAAATATACAAAAGGAAAAAAAATCAGAAGTTATTCTTATGCTTCGTTGCGTTTTGCCTTAACAGCGTTGATAATGATACATGAGAAGATCATAGCAAGAGCCTCAACAAACAAGACAATGATTCCGACGAAGGCGACATAGATGAGGTTGGTTTGAAACGCATTCCAGAAGAGTGTGGCGCATCCTTGCTGTAAATTAGGTTTGTTTACGAGTCAGTGTTTGTTTTTTTCCTTCGGGTTTTCGTCCTCCTAGCTTTTTCAAACATTCACCTGTGAAAGTGTGGCACATTGGCACGAGGTTGGGAAAGCGCCGTAGACCATGTAGTCGCTACAACCCGAGGCTCCACAGCATTGCAGCTGAAATAATAATATTTATTATTCTATCCTGGGAGGTTAATTAATATTCTAGGGAATTTTTGTTTCTCAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAATCGGACTTCAAAGAATCA</pcr_primer_p1>
		<pcr_primer_p2>TGCTATGATCTTCTCATGTATCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTAATCGGACTTCAAAGAATCAAAAAATAAGATACAAGTATTACAACAAATCCGGTTAATAGAAAAATCAGAATCTTTGGGATTTTTGTATCTTGGTTTGTTTTCTATGTTTTCTACTTCCCGGTTCATTATAATACAAATATAATGATGTCAAAATATACAAAAGGAAAAAAAATCAGAAGTTATTCTTATGCTTCGTTGCGTTTTGCCTTAACAGCGTTGATAATGATACATGAGAAGATCATAGCA</canonical_amplicon>
		<polymorphic_amplicon>GTAATCGGACTTCAAAGAATCAAAAAATAAGATACAAGTATTACAACAAATCCGGTTAATAGAAAAATCAGAATCTTTGGGRTTTTTGTATCTTGGTTTGTTTTCTATGTTTTCTACTTCCCGGTTCATTATAATACAAATATAATGATGTCAAAATATACAAAAGGAAAAAAAATCAGAAGTTATTCTTATGCTTCGTTGCGTTTTGCCTTAACAGCGTTGATAATGATACATGAGAAGATCATAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20420</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>926617</contig_pos>
        <strand></strand>
        <context>ATTATCTATT[T/A]TTTAAAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGTGTTTTTTTAAAGCAATGCAAAAATCTTATTTTTCAAAATTATCTATT</left_flank>
        <right_flank>TTTAAAATTTCTTCTAACACAATGCTTTAAGGCACACTTTCGTGATACCT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCACCTGAATTCACAGAGTATATCCACTTTCCACTATTCAAGTCTCGAGCAAAAAATCAAAATCCCTAATTTTCAGAACTCAGTCAACTGCTACCAAGAGAAGATTGTCTCACTCATTGGAAGAAGAGCCACCGGCGAAGCGATCCATGGCAACATCAACGGACGACGCTTATTTCCACTTCGCACACATCACCGGCTCCACTTCATCTTCTTCTCGCTAGAGCGCGCACACACTGACATTGACAAATTGGGAAATTTCTCCTCTTTTTTCTCATTTCCTTCTAAATGCAATGCTTTCTTTTTTTTGCCCAACAATTTTTTATTCAGATCCCCTCCCCCTTGGTTTTCAAATGCCTTTTTATGACTAGTATAGTTTTGATCCCTTTTTGATTAAATTATTTTTTTAAATTCCTTTTCGTGTTCTTGTCTTCCCTCATCCCGATAGTAGTGTTTTTTTAAAGCAATGCAAAAATCTTATTTTTCAAAATTATCTATTTTTTAAAATTTCTTCTAACACAATGCTTTAAGGCACACTTTCGTGATACCTTCTAATTGCTAATTCTTTCTTTTCTAACCCAGTGCGCTCCATTTCAGGCAAAACTAATGTCTGGAGATAACCAGGGGGAGAATCAACAAGAGATGGGAGGTGACGATGGAGAACAACCAATGGAGGTAGATGAAGTGCCTTCGATTCCCGAGCAAGAATTCGGGCAAAACATGGAACACATAGAGATGCTTCGCAGGTTGCCAGTTCGACCTGAGCCACCAGTTTTCCCAGGTGGCTTCGTCAACTATAATCCGATTCCACCATTCATGGAGAACGATCCTGTACTGTATGGAGAGATTCGAGGACACCTTAATGCACTGAACGCACGAGAAGGACCCATGCACAACTTTCTGTTTGGTAATTTTTGAGAGTTATCATCAACAGCCTAGAGAAAAAACTTTAGACCCACCACCGCCCAATGAGCTCATTCATCCCGAACATTGGGTACCA</canonical>
            <polymorphic>TCTTCACCTGAATTCACAGAGTATATCCACTTTCCACTATTCAAGTCTCGAGCAAAAAATCAAAATCCCTAATTTTCAGAACTCAGTCAACTGCTACCAAGAGAAGATTGTCTCACTCATTGGAAGAAGAGCCACCGGCGAAGCGATCCATGGCAACATCAACGGACGACGCTTATTTCCACTTCGCACACATCACCGGCTCCACTTCATCTTCTTCTCGCTAGAGCGCGCACACACTGACATTGACAAATTGGGAAATTTCTCCTCTTTTTTCTCATTTCCTTCTAAATGCAATGCTTTCTTTTTTTTGCCCAACAATTTTTTATTCAGATCCCCTCCCCCTTGGTTTTCAAATGCCTTTTTATGACTAGTATAGTTTTGATCCCTTTTTGATTAAATTATTTTTTTAAATTCCTTTTCGTGTTCTTGTCTTCCCTCATCCCGATAGTAGTGTTTTTTTAAAGCAATGCAAAAATCTTATTTTTCAAAATTATCTATTWTTTAAAATTTCTTCTAACACAATGCTTTAAGGCACACTTTCGTGATACCTTCTAATTGCTAATTCTTTCTTTTCTAACCCAGTGCGCTCCATTTCAGGCAAAACTAATGTCTGGAGATAACCAGGGGGAGAATCAACAAGAGATGGGAGGTGACGATGGAGAACAACCAATGGAGGTAGATGAAGTGCCTTCGATTCCCGAGCAAGAATTCGGGCAAAACATGGAACACATAGAGATGCTTCGCAGGTTGCCAGTTCGACCTGAGCCACCAGTTTTCCCAGGTGGCTTCGTCAACTATAATCCGATTCCACCATTCATGGAGAACGATCCTGTACTGTATGGAGAGATTCGAGGACACCTTAATGCACTGAACGCACGAGAAGGACCCATGCACAACTTTCTGTTTGGTAATTTTTGAGAGTTATCATCAACAGCCTAGAGAAAAAACTTTAGACCCACCACCGCCCAATGAGCTCATTCATCCCGAACATTGGGTACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAATGCCTTTTTATGACTA</pcr_primer_p1>
		<pcr_primer_p2>CACTGGGTTAGAAAAGAAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAATGCCTTTTTATGACTAGTATAGTTTTGATCCCTTTTTGATTAAATTATTTTTTTAAATTCCTTTTCGTGTTCTTGTCTTCCCTCATCCCGATAGTAGTGTTTTTTTAAAGCAATGCAAAAATCTTATTTTTCAAAATTATCTATTTTTTAAAATTTCTTCTAACACAATGCTTTAAGGCACACTTTCGTGATACCTTCTAATTGCTAATTCTTTCTTTTCTAACCCAGTG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAATGCCTTTTTATGACTAGTATAGTTTTGATCCCTTTTTGATTAAATTATTTTTTTAAATTCCTTTTCGTGTTCTTGTCTTCCCTCATCCCGATAGTAGTGTTTTTTTAAAGCAATGCAAAAATCTTATTTTTCAAAATTATCTATTWTTTAAAATTTCTTCTAACACAATGCTTTAAGGCACACTTTCGTGATACCTTCTAATTGCTAATTCTTTCTTTTCTAACCCAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20421</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>926656</contig_pos>
        <strand></strand>
        <context>AAGGCACACT[T/G]TCGTGATACC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AATTATCTATTTTTTAAAATTTCTTCTAACACAATGCTTTAAGGCACACT</left_flank>
        <right_flank>TCGTGATACCTTCTAATTGCTAATTCTTTCTTTTCTAACCCAGTGCGCTC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAAGTCTCGAGCAAAAAATCAAAATCCCTAATTTTCAGAACTCAGTCAACTGCTACCAAGAGAAGATTGTCTCACTCATTGGAAGAAGAGCCACCGGCGAAGCGATCCATGGCAACATCAACGGACGACGCTTATTTCCACTTCGCACACATCACCGGCTCCACTTCATCTTCTTCTCGCTAGAGCGCGCACACACTGACATTGACAAATTGGGAAATTTCTCCTCTTTTTTCTCATTTCCTTCTAAATGCAATGCTTTCTTTTTTTTGCCCAACAATTTTTTATTCAGATCCCCTCCCCCTTGGTTTTCAAATGCCTTTTTATGACTAGTATAGTTTTGATCCCTTTTTGATTAAATTATTTTTTTAAATTCCTTTTCGTGTTCTTGTCTTCCCTCATCCCGATAGTAGTGTTTTTTTAAAGCAATGCAAAAATCTTATTTTTCAAAATTATCTATTTTTTAAAATTTCTTCTAACACAATGCTTTAAGGCACACTTTCGTGATACCTTCTAATTGCTAATTCTTTCTTTTCTAACCCAGTGCGCTCCATTTCAGGCAAAACTAATGTCTGGAGATAACCAGGGGGAGAATCAACAAGAGATGGGAGGTGACGATGGAGAACAACCAATGGAGGTAGATGAAGTGCCTTCGATTCCCGAGCAAGAATTCGGGCAAAACATGGAACACATAGAGATGCTTCGCAGGTTGCCAGTTCGACCTGAGCCACCAGTTTTCCCAGGTGGCTTCGTCAACTATAATCCGATTCCACCATTCATGGAGAACGATCCTGTACTGTATGGAGAGATTCGAGGACACCTTAATGCACTGAACGCACGAGAAGGACCCATGCACAACTTTCTGTTTGGTAATTTTTGAGAGTTATCATCAACAGCCTAGAGAAAAAACTTTAGACCCACCACCGCCCAATGAGCTCATTCATCCCGAACATTGGGTACCAATGGAACAAATTCAAATGGATCAAGGCGGCTTTGTTTTC</canonical>
            <polymorphic>TTCAAGTCTCGAGCAAAAAATCAAAATCCCTAATTTTCAGAACTCAGTCAACTGCTACCAAGAGAAGATTGTCTCACTCATTGGAAGAAGAGCCACCGGCGAAGCGATCCATGGCAACATCAACGGACGACGCTTATTTCCACTTCGCACACATCACCGGCTCCACTTCATCTTCTTCTCGCTAGAGCGCGCACACACTGACATTGACAAATTGGGAAATTTCTCCTCTTTTTTCTCATTTCCTTCTAAATGCAATGCTTTCTTTTTTTTGCCCAACAATTTTTTATTCAGATCCCCTCCCCCTTGGTTTTCAAATGCCTTTTTATGACTAGTATAGTTTTGATCCCTTTTTGATTAAATTATTTTTTTAAATTCCTTTTCGTGTTCTTGTCTTCCCTCATCCCGATAGTAGTGTTTTTTTAAAGCAATGCAAAAATCTTATTTTTCAAAATTATCTATTTTTTAAAATTTCTTCTAACACAATGCTTTAAGGCACACTKTCGTGATACCTTCTAATTGCTAATTCTTTCTTTTCTAACCCAGTGCGCTCCATTTCAGGCAAAACTAATGTCTGGAGATAACCAGGGGGAGAATCAACAAGAGATGGGAGGTGACGATGGAGAACAACCAATGGAGGTAGATGAAGTGCCTTCGATTCCCGAGCAAGAATTCGGGCAAAACATGGAACACATAGAGATGCTTCGCAGGTTGCCAGTTCGACCTGAGCCACCAGTTTTCCCAGGTGGCTTCGTCAACTATAATCCGATTCCACCATTCATGGAGAACGATCCTGTACTGTATGGAGAGATTCGAGGACACCTTAATGCACTGAACGCACGAGAAGGACCCATGCACAACTTTCTGTTTGGTAATTTTTGAGAGTTATCATCAACAGCCTAGAGAAAAAACTTTAGACCCACCACCGCCCAATGAGCTCATTCATCCCGAACATTGGGTACCAATGGAACAAATTCAAATGGATCAAGGCGGCTTTGTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGTATAGTTTTGATCCCTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>AGACATTAGTTTTGCCTGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTAGTATAGTTTTGATCCCTTTTTGATTAAATTATTTTTTTAAATTCCTTTTCGTGTTCTTGTCTTCCCTCATCCCGATAGTAGTGTTTTTTTAAAGCAATGCAAAAATCTTATTTTTCAAAATTATCTATTTTTTAAAATTTCTTCTAACACAATGCTTTAAGGCACACTTTCGTGATACCTTCTAATTGCTAATTCTTTCTTTTCTAACCCAGTGCGCTCCATTTCAGGCAAAACTAATGTCT</canonical_amplicon>
		<polymorphic_amplicon>CTAGTATAGTTTTGATCCCTTTTTGATTAAATTATTTTTTTAAATTCCTTTTCGTGTTCTTGTCTTCCCTCATCCCGATAGTAGTGTTTTTTTAAAGCAATGCAAAAATCTTATTTTTCAAAATTATCTATTTTTTAAAATTTCTTCTAACACAATGCTTTAAGGCACACTKTCGTGATACCTTCTAATTGCTAATTCTTTCTTTTCTAACCCAGTGCGCTCCATTTCAGGCAAAACTAATGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20422</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>926792</contig_pos>
        <strand></strand>
        <context>AACCAATGGA[G/A]GTAGATGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGGGAGAATCAACAAGAGATGGGAGGTGACGATGGAGAACAACCAATGGA</left_flank>
        <right_flank>GTAGATGAAGTGCCTTCGATTCCCGAGCAAGAATTCGGGCAAAACATGGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCACTTCGCACACATCACCGGCTCCACTTCATCTTCTTCTCGCTAGAGCGCGCACACACTGACATTGACAAATTGGGAAATTTCTCCTCTTTTTTCTCATTTCCTTCTAAATGCAATGCTTTCTTTTTTTTGCCCAACAATTTTTTATTCAGATCCCCTCCCCCTTGGTTTTCAAATGCCTTTTTATGACTAGTATAGTTTTGATCCCTTTTTGATTAAATTATTTTTTTAAATTCCTTTTCGTGTTCTTGTCTTCCCTCATCCCGATAGTAGTGTTTTTTTAAAGCAATGCAAAAATCTTATTTTTCAAAATTATCTATTTTTTAAAATTTCTTCTAACACAATGCTTTAAGGCACACTTTCGTGATACCTTCTAATTGCTAATTCTTTCTTTTCTAACCCAGTGCGCTCCATTTCAGGCAAAACTAATGTCTGGAGATAACCAGGGGGAGAATCAACAAGAGATGGGAGGTGACGATGGAGAACAACCAATGGAGGTAGATGAAGTGCCTTCGATTCCCGAGCAAGAATTCGGGCAAAACATGGAACACATAGAGATGCTTCGCAGGTTGCCAGTTCGACCTGAGCCACCAGTTTTCCCAGGTGGCTTCGTCAACTATAATCCGATTCCACCATTCATGGAGAACGATCCTGTACTGTATGGAGAGATTCGAGGACACCTTAATGCACTGAACGCACGAGAAGGACCCATGCACAACTTTCTGTTTGGTAATTTTTGAGAGTTATCATCAACAGCCTAGAGAAAAAACTTTAGACCCACCACCGCCCAATGAGCTCATTCATCCCGAACATTGGGTACCAATGGAACAAATTCAAATGGATCAAGGCGGCTTTGTTTTCGGACATGCCAGCGACACTGATTCGTCGGGTATCGGAACGGATGAGGAGGCTGAAGCGTCTGATAATGACGATCAGGATGGAGATCTGTTTCGCAACAACAGACTCCGTCGAAGACATTGACTTGTTGAGTGTTTTT</canonical>
            <polymorphic>TTTCCACTTCGCACACATCACCGGCTCCACTTCATCTTCTTCTCGCTAGAGCGCGCACACACTGACATTGACAAATTGGGAAATTTCTCCTCTTTTTTCTCATTTCCTTCTAAATGCAATGCTTTCTTTTTTTTGCCCAACAATTTTTTATTCAGATCCCCTCCCCCTTGGTTTTCAAATGCCTTTTTATGACTAGTATAGTTTTGATCCCTTTTTGATTAAATTATTTTTTTAAATTCCTTTTCGTGTTCTTGTCTTCCCTCATCCCGATAGTAGTGTTTTTTTAAAGCAATGCAAAAATCTTATTTTTCAAAATTATCTATTTTTTAAAATTTCTTCTAACACAATGCTTTAAGGCACACTTTCGTGATACCTTCTAATTGCTAATTCTTTCTTTTCTAACCCAGTGCGCTCCATTTCAGGCAAAACTAATGTCTGGAGATAACCAGGGGGAGAATCAACAAGAGATGGGAGGTGACGATGGAGAACAACCAATGGARGTAGATGAAGTGCCTTCGATTCCCGAGCAAGAATTCGGGCAAAACATGGAACACATAGAGATGCTTCGCAGGTTGCCAGTTCGACCTGAGCCACCAGTTTTCCCAGGTGGCTTCGTCAACTATAATCCGATTCCACCATTCATGGAGAACGATCCTGTACTGTATGGAGAGATTCGAGGACACCTTAATGCACTGAACGCACGAGAAGGACCCATGCACAACTTTCTGTTTGGTAATTTTTGAGAGTTATCATCAACAGCCTAGAGAAAAAACTTTAGACCCACCACCGCCCAATGAGCTCATTCATCCCGAACATTGGGTACCAATGGAACAAATTCAAATGGATCAAGGCGGCTTTGTTTTCGGACATGCCAGCGACACTGATTCGTCGGGTATCGGAACGGATGAGGAGGCTGAAGCGTCTGATAATGACGATCAGGATGGAGATCTGTTTCGCAACAACAGACTCCGTCGAAGACATTGACTTGTTGAGTGTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTTCTTTTCTAACCCAGTG</pcr_primer_p1>
		<pcr_primer_p2>GTGGAATCGGATTATAGTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTTCTTTTCTAACCCAGTGCGCTCCATTTCAGGCAAAACTAATGTCTGGAGATAACCAGGGGGAGAATCAACAAGAGATGGGAGGTGACGATGGAGAACAACCAATGGAGGTAGATGAAGTGCCTTCGATTCCCGAGCAAGAATTCGGGCAAAACATGGAACACATAGAGATGCTTCGCAGGTTGCCAGTTCGACCTGAGCCACCAGTTTTCCCAGGTGGCTTCGTCAACTATAATCCGATTCCAC</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTTCTTTTCTAACCCAGTGCGCTCCATTTCAGGCAAAACTAATGTCTGGAGATAACCAGGGGGAGAATCAACAAGAGATGGGAGGTGACGATGGAGAACAACCAATGGARGTAGATGAAGTGCCTTCGATTCCCGAGCAAGAATTCGGGCAAAACATGGAACACATAGAGATGCTTCGCAGGTTGCCAGTTCGACCTGAGCCACCAGTTTTCCCAGGTGGCTTCGTCAACTATAATCCGATTCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20423</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>926954</contig_pos>
        <strand></strand>
        <context>ATCCTGTACT[G/A]TATGGAGAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTCGTCAACTATAATCCGATTCCACCATTCATGGAGAACGATCCTGTACT</left_flank>
        <right_flank>TATGGAGAGATTCGAGGACACCTTAATGCACTGAACGCACGAGAAGGACC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCCCTTGGTTTTCAAATGCCTTTTTATGACTAGTATAGTTTTGATCCCTTTTTGATTAAATTATTTTTTTAAATTCCTTTTCGTGTTCTTGTCTTCCCTCATCCCGATAGTAGTGTTTTTTTAAAGCAATGCAAAAATCTTATTTTTCAAAATTATCTATTTTTTAAAATTTCTTCTAACACAATGCTTTAAGGCACACTTTCGTGATACCTTCTAATTGCTAATTCTTTCTTTTCTAACCCAGTGCGCTCCATTTCAGGCAAAACTAATGTCTGGAGATAACCAGGGGGAGAATCAACAAGAGATGGGAGGTGACGATGGAGAACAACCAATGGAGGTAGATGAAGTGCCTTCGATTCCCGAGCAAGAATTCGGGCAAAACATGGAACACATAGAGATGCTTCGCAGGTTGCCAGTTCGACCTGAGCCACCAGTTTTCCCAGGTGGCTTCGTCAACTATAATCCGATTCCACCATTCATGGAGAACGATCCTGTACTGTATGGAGAGATTCGAGGACACCTTAATGCACTGAACGCACGAGAAGGACCCATGCACAACTTTCTGTTTGGTAATTTTTGAGAGTTATCATCAACAGCCTAGAGAAAAAACTTTAGACCCACCACCGCCCAATGAGCTCATTCATCCCGAACATTGGGTACCAATGGAACAAATTCAAATGGATCAAGGCGGCTTTGTTTTCGGACATGCCAGCGACACTGATTCGTCGGGTATCGGAACGGATGAGGAGGCTGAAGCGTCTGATAATGACGATCAGGATGGAGATCTGTTTCGCAACAACAGACTCCGTCGAAGACATTGACTTGTTGAGTGTTTTTCTTTATTCAGTTGTTAAAAAAATAACCTGAAAATCGCAAACTTGAAAAACCGAAGACTCGAAGGACTTGAAAGCTTGCTGGCTTGAAGGCTTGATGGCTTGAAGGCTCGAAGGCACAGAGATCCCAACGCTTGAAAGCTAACAGGCTAACAGTCAAGGTTAT</canonical>
            <polymorphic>CCCCCTTGGTTTTCAAATGCCTTTTTATGACTAGTATAGTTTTGATCCCTTTTTGATTAAATTATTTTTTTAAATTCCTTTTCGTGTTCTTGTCTTCCCTCATCCCGATAGTAGTGTTTTTTTAAAGCAATGCAAAAATCTTATTTTTCAAAATTATCTATTTTTTAAAATTTCTTCTAACACAATGCTTTAAGGCACACTTTCGTGATACCTTCTAATTGCTAATTCTTTCTTTTCTAACCCAGTGCGCTCCATTTCAGGCAAAACTAATGTCTGGAGATAACCAGGGGGAGAATCAACAAGAGATGGGAGGTGACGATGGAGAACAACCAATGGAGGTAGATGAAGTGCCTTCGATTCCCGAGCAAGAATTCGGGCAAAACATGGAACACATAGAGATGCTTCGCAGGTTGCCAGTTCGACCTGAGCCACCAGTTTTCCCAGGTGGCTTCGTCAACTATAATCCGATTCCACCATTCATGGAGAACGATCCTGTACTRTATGGAGAGATTCGAGGACACCTTAATGCACTGAACGCACGAGAAGGACCCATGCACAACTTTCTGTTTGGTAATTTTTGAGAGTTATCATCAACAGCCTAGAGAAAAAACTTTAGACCCACCACCGCCCAATGAGCTCATTCATCCCGAACATTGGGTACCAATGGAACAAATTCAAATGGATCAAGGCGGCTTTGTTTTCGGACATGCCAGCGACACTGATTCGTCGGGTATCGGAACGGATGAGGAGGCTGAAGCGTCTGATAATGACGATCAGGATGGAGATCTGTTTCGCAACAACAGACTCCGTCGAAGACATTGACTTGTTGAGTGTTTTTCTTTATTCAGTTGTTAAAAAAATAACCTGAAAATCGCAAACTTGAAAAACCGAAGACTCGAAGGACTTGAAAGCTTGCTGGCTTGAAGGCTTGATGGCTTGAAGGCTCGAAGGCACAGAGATCCCAACGCTTGAAAGCTAACAGGCTAACAGTCAAGGTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>499 490 11</canonical_bands>
                <polymorphic_bands>989 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAACATGGAACACATAGAGAT</pcr_primer_p1>
		<pcr_primer_p2>CTCTAGGCTGTTGATGATAACTC</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>CAAAACATGGAACACATAGAGATGCTTCGCAGGTTGCCAGTTCGACCTGAGCCACCAGTTTTCCCAGGTGGCTTCGTCAACTATAATCCGATTCCACCATTCATGGAGAACGATCCTGTACTGTATGGAGAGATTCGAGGACACCTTAATGCACTGAACGCACGAGAAGGACCCATGCACAACTTTCTGTTTGGTAATTTTTGAGAGTTATCATCAACAGCCTAGAG</canonical_amplicon>
		<polymorphic_amplicon>CAAAACATGGAACACATAGAGATGCTTCGCAGGTTGCCAGTTCGACCTGAGCCACCAGTTTTCCCAGGTGGCTTCGTCAACTATAATCCGATTCCACCATTCATGGAGAACGATCCTGTACTRTATGGAGAGATTCGAGGACACCTTAATGCACTGAACGCACGAGAAGGACCCATGCACAACTTTCTGTTTGGTAATTTTTGAGAGTTATCATCAACAGCCTAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20424</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>927085</contig_pos>
        <strand></strand>
        <context>ACCACCGCCC[A/G]ATGAGCTCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAGTTATCATCAACAGCCTAGAGAAAAAACTTTAGACCCACCACCGCCC</left_flank>
        <right_flank>ATGAGCTCATTCATCCCGAACATTGGGTACCAATGGAACAAATTCAAATG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAAAAATCTTATTTTTCAAAATTATCTATTTTTTAAAATTTCTTCTAACACAATGCTTTAAGGCACACTTTCGTGATACCTTCTAATTGCTAATTCTTTCTTTTCTAACCCAGTGCGCTCCATTTCAGGCAAAACTAATGTCTGGAGATAACCAGGGGGAGAATCAACAAGAGATGGGAGGTGACGATGGAGAACAACCAATGGAGGTAGATGAAGTGCCTTCGATTCCCGAGCAAGAATTCGGGCAAAACATGGAACACATAGAGATGCTTCGCAGGTTGCCAGTTCGACCTGAGCCACCAGTTTTCCCAGGTGGCTTCGTCAACTATAATCCGATTCCACCATTCATGGAGAACGATCCTGTACTGTATGGAGAGATTCGAGGACACCTTAATGCACTGAACGCACGAGAAGGACCCATGCACAACTTTCTGTTTGGTAATTTTTGAGAGTTATCATCAACAGCCTAGAGAAAAAACTTTAGACCCACCACCGCCCAATGAGCTCATTCATCCCGAACATTGGGTACCAATGGAACAAATTCAAATGGATCAAGGCGGCTTTGTTTTCGGACATGCCAGCGACACTGATTCGTCGGGTATCGGAACGGATGAGGAGGCTGAAGCGTCTGATAATGACGATCAGGATGGAGATCTGTTTCGCAACAACAGACTCCGTCGAAGACATTGACTTGTTGAGTGTTTTTCTTTATTCAGTTGTTAAAAAAATAACCTGAAAATCGCAAACTTGAAAAACCGAAGACTCGAAGGACTTGAAAGCTTGCTGGCTTGAAGGCTTGATGGCTTGAAGGCTCGAAGGCACAGAGATCCCAACGCTTGAAAGCTAACAGGCTAACAGTCAAGGTTATCAGGCTAGCTAGCAGGCTAGCAGACTTGTAGAATAGCAGGCTAGCAGGTTAGCAAGTTTGGAAGCTAGCAGGCTTGCAGGTTTGCAGGTTTGAAGGTTTGCAGGATTGCAGGCTAGTAGACTAGCAGGCTA</canonical>
            <polymorphic>GCAAAAATCTTATTTTTCAAAATTATCTATTTTTTAAAATTTCTTCTAACACAATGCTTTAAGGCACACTTTCGTGATACCTTCTAATTGCTAATTCTTTCTTTTCTAACCCAGTGCGCTCCATTTCAGGCAAAACTAATGTCTGGAGATAACCAGGGGGAGAATCAACAAGAGATGGGAGGTGACGATGGAGAACAACCAATGGAGGTAGATGAAGTGCCTTCGATTCCCGAGCAAGAATTCGGGCAAAACATGGAACACATAGAGATGCTTCGCAGGTTGCCAGTTCGACCTGAGCCACCAGTTTTCCCAGGTGGCTTCGTCAACTATAATCCGATTCCACCATTCATGGAGAACGATCCTGTACTGTATGGAGAGATTCGAGGACACCTTAATGCACTGAACGCACGAGAAGGACCCATGCACAACTTTCTGTTTGGTAATTTTTGAGAGTTATCATCAACAGCCTAGAGAAAAAACTTTAGACCCACCACCGCCCRATGAGCTCATTCATCCCGAACATTGGGTACCAATGGAACAAATTCAAATGGATCAAGGCGGCTTTGTTTTCGGACATGCCAGCGACACTGATTCGTCGGGTATCGGAACGGATGAGGAGGCTGAAGCGTCTGATAATGACGATCAGGATGGAGATCTGTTTCGCAACAACAGACTCCGTCGAAGACATTGACTTGTTGAGTGTTTTTCTTTATTCAGTTGTTAAAAAAATAACCTGAAAATCGCAAACTTGAAAAACCGAAGACTCGAAGGACTTGAAAGCTTGCTGGCTTGAAGGCTTGATGGCTTGAAGGCTCGAAGGCACAGAGATCCCAACGCTTGAAAGCTAACAGGCTAACAGTCAAGGTTATCAGGCTAGCTAGCAGGCTAGCAGACTTGTAGAATAGCAGGCTAGCAGGTTAGCAAGTTTGGAAGCTAGCAGGCTTGCAGGTTTGCAGGTTTGAAGGTTTGCAGGATTGCAGGCTAGTAGACTAGCAGGCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAACTATAATCCGATTCCAC</pcr_primer_p1>
		<pcr_primer_p2>CCTTGATCCATTTGAATTTG</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GTCAACTATAATCCGATTCCACCATTCATGGAGAACGATCCTGTACTGTATGGAGAGATTCGAGGACACCTTAATGCACTGAACGCACGAGAAGGACCCATGCACAACTTTCTGTTTGGTAATTTTTGAGAGTTATCATCAACAGCCTAGAGAAAAAACTTTAGACCCACCACCGCCCAATGAGCTCATTCATCCCGAACATTGGGTACCAATGGAACAAATTCAAATGGATCAAGG</canonical_amplicon>
		<polymorphic_amplicon>GTCAACTATAATCCGATTCCACCATTCATGGAGAACGATCCTGTACTGTATGGAGAGATTCGAGGACACCTTAATGCACTGAACGCACGAGAAGGACCCATGCACAACTTTCTGTTTGGTAATTTTTGAGAGTTATCATCAACAGCCTAGAGAAAAAACTTTAGACCCACCACCGCCCRATGAGCTCATTCATCCCGAACATTGGGTACCAATGGAACAAATTCAAATGGATCAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20425</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>927186</contig_pos>
        <strand></strand>
        <context>ATTCGTCGGG[T/A]ATCGGAACGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GATCAAGGCGGCTTTGTTTTCGGACATGCCAGCGACACTGATTCGTCGGG</left_flank>
        <right_flank>ATCGGAACGGATGAGGAGGCTGAAGCGTCTGATAATGACGATCAGGATGG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCTAACCCAGTGCGCTCCATTTCAGGCAAAACTAATGTCTGGAGATAACCAGGGGGAGAATCAACAAGAGATGGGAGGTGACGATGGAGAACAACCAATGGAGGTAGATGAAGTGCCTTCGATTCCCGAGCAAGAATTCGGGCAAAACATGGAACACATAGAGATGCTTCGCAGGTTGCCAGTTCGACCTGAGCCACCAGTTTTCCCAGGTGGCTTCGTCAACTATAATCCGATTCCACCATTCATGGAGAACGATCCTGTACTGTATGGAGAGATTCGAGGACACCTTAATGCACTGAACGCACGAGAAGGACCCATGCACAACTTTCTGTTTGGTAATTTTTGAGAGTTATCATCAACAGCCTAGAGAAAAAACTTTAGACCCACCACCGCCCAATGAGCTCATTCATCCCGAACATTGGGTACCAATGGAACAAATTCAAATGGATCAAGGCGGCTTTGTTTTCGGACATGCCAGCGACACTGATTCGTCGGGTATCGGAACGGATGAGGAGGCTGAAGCGTCTGATAATGACGATCAGGATGGAGATCTGTTTCGCAACAACAGACTCCGTCGAAGACATTGACTTGTTGAGTGTTTTTCTTTATTCAGTTGTTAAAAAAATAACCTGAAAATCGCAAACTTGAAAAACCGAAGACTCGAAGGACTTGAAAGCTTGCTGGCTTGAAGGCTTGATGGCTTGAAGGCTCGAAGGCACAGAGATCCCAACGCTTGAAAGCTAACAGGCTAACAGTCAAGGTTATCAGGCTAGCTAGCAGGCTAGCAGACTTGTAGAATAGCAGGCTAGCAGGTTAGCAAGTTTGGAAGCTAGCAGGCTTGCAGGTTTGCAGGTTTGAAGGTTTGCAGGATTGCAGGCTAGTAGACTAGCAGGCTAGCATTCTAGCAGGCTAGGCTAACTGGCATCCAAGCTTGACTGCTTTAAGGCTTGAATGCTTGAATGCTTGAATGCTTCAATGCTTGAAGGCTTGCAGGTTT</canonical>
            <polymorphic>TTTTCTAACCCAGTGCGCTCCATTTCAGGCAAAACTAATGTCTGGAGATAACCAGGGGGAGAATCAACAAGAGATGGGAGGTGACGATGGAGAACAACCAATGGAGGTAGATGAAGTGCCTTCGATTCCCGAGCAAGAATTCGGGCAAAACATGGAACACATAGAGATGCTTCGCAGGTTGCCAGTTCGACCTGAGCCACCAGTTTTCCCAGGTGGCTTCGTCAACTATAATCCGATTCCACCATTCATGGAGAACGATCCTGTACTGTATGGAGAGATTCGAGGACACCTTAATGCACTGAACGCACGAGAAGGACCCATGCACAACTTTCTGTTTGGTAATTTTTGAGAGTTATCATCAACAGCCTAGAGAAAAAACTTTAGACCCACCACCGCCCAATGAGCTCATTCATCCCGAACATTGGGTACCAATGGAACAAATTCAAATGGATCAAGGCGGCTTTGTTTTCGGACATGCCAGCGACACTGATTCGTCGGGWATCGGAACGGATGAGGAGGCTGAAGCGTCTGATAATGACGATCAGGATGGAGATCTGTTTCGCAACAACAGACTCCGTCGAAGACATTGACTTGTTGAGTGTTTTTCTTTATTCAGTTGTTAAAAAAATAACCTGAAAATCGCAAACTTGAAAAACCGAAGACTCGAAGGACTTGAAAGCTTGCTGGCTTGAAGGCTTGATGGCTTGAAGGCTCGAAGGCACAGAGATCCCAACGCTTGAAAGCTAACAGGCTAACAGTCAAGGTTATCAGGCTAGCTAGCAGGCTAGCAGACTTGTAGAATAGCAGGCTAGCAGGTTAGCAAGTTTGGAAGCTAGCAGGCTTGCAGGTTTGCAGGTTTGAAGGTTTGCAGGATTGCAGGCTAGTAGACTAGCAGGCTAGCATTCTAGCAGGCTAGGCTAACTGGCATCCAAGCTTGACTGCTTTAAGGCTTGAATGCTTGAATGCTTGAATGCTTCAATGCTTGAAGGCTTGCAGGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCATCAACAGCCTAGAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAACACTCAACAAGTCAATGTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATCATCAACAGCCTAGAGAAAAAACTTTAGACCCACCACCGCCCAATGAGCTCATTCATCCCGAACATTGGGTACCAATGGAACAAATTCAAATGGATCAAGGCGGCTTTGTTTTCGGACATGCCAGCGACACTGATTCGTCGGGTATCGGAACGGATGAGGAGGCTGAAGCGTCTGATAATGACGATCAGGATGGAGATCTGTTTCGCAACAACAGACTCCGTCGAAGACATTGACTTGTTGAGTGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TATCATCAACAGCCTAGAGAAAAAACTTTAGACCCACCACCGCCCAATGAGCTCATTCATCCCGAACATTGGGTACCAATGGAACAAATTCAAATGGATCAAGGCGGCTTTGTTTTCGGACATGCCAGCGACACTGATTCGTCGGGWATCGGAACGGATGAGGAGGCTGAAGCGTCTGATAATGACGATCAGGATGGAGATCTGTTTCGCAACAACAGACTCCGTCGAAGACATTGACTTGTTGAGTGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20426</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>936036</contig_pos>
        <strand>+</strand>
        <context>AAAAAACWTT[C/T]AGACTAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAACGTTATTCAATAAAATTTGTCCAATTCATGATATTTAAAAAACTTT</left_flank>
        <right_flank>AGACTAAAAAAATTTGAGCGGTGGAAGAGAGAATCCGGCTGGCCGCAGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATATTCGAAGCGCCATCAGATTTGGTCGAATCAGTGAGAAACCTAGAAGATGATGTCTTAGAAGGTGGGCGAACTTTTCAGAATCGATCAAATTTTCAAAACTTTTAGAAGTATGTAATGAAGAAATCAAGCAACAAGTTCAGTACCTGGAGACAGTTATAGACGGATGGAAAACTTTTGGAAACGTGGATAAAGATACTCGATCGATGATTTGCGTTCTGCTGAAAGCTAGAAAAGCTGGCTTGTTTGAAAAGAGGATTTTGTATTCAGAAACTACTAAAAAAGAGAAGATTATTCAATCGAAGGGAAGCAGGCATGGGAAACCGATGACTCTGGAGTTGGCATCAACGTGAGTTGGGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATGATTTTTTAAAACTATCAAAGCCTAAGAACGTCTTTCATTTTTTAGTTTTAACGTTATTCAATAAAATTTGTCCAATTCATGATATTTAAAAAACTTTCAGACTAAAAAAATTTGAGCGGTGGAAGAGAGAATCCGGCTGGCCGCAGCCTGAGGTTGAATTTGGGAAACTTTTGAAAACTCTGATGTTCAGAAGTTAGGCCAATACAATTTAATTATGAATTCGTTTTTCAGGAGAAATCTCACAGTTGATTCTGGATCAGACCCGGGTGATGCTGTGCCAGTCTCACTATCGGCAATTCTATCAAACGCCATCGTTGGATACGATAATGGAGTGCCAATCATCTACGAGGTCCTGGAGGCACCAGAAGATAATGCCGAAGGTGAGAGCACCGAAGACGAATCCAAGGAGGACGAAGAAACCAAAAATGTGCAAAGCTCTAGCAACGATAACCAAGCCTCACTAGATATGGACGAGATCTTGGTGGAAGATGATTCTGTCACTGGAGCATCGTGCAATGTTATGCTTTCAAAGAACATCAACTTGGCACGCATACAAGTTAGAGAGGCGTTGGATAATGTAGATGCGATGAAAGTGGCA</canonical>
            <polymorphic>TAATATTCGAAGCGCCATCAGATTTGGTCGAATCAGTGAGAAACCTAGAAGATGATGTCTTAGAAGGTGGGCGAACTTTTCAGAATCGATCAAATTTTCAAAACTTTTAGAAGTATGTAATGAAGAAATCAAGCAACAAGTTCAGTACCTGGAGACAGTTATAGACGGATGGAAAACTTTTGGAAACGTGGATAAAGATACTCGATCGATGATTTGCGTTCTGCTGAAAGCTAGAAAAGCTGGCTTGTTTGAAAAGAGGATTTTGTATTCAGAAACTACTAAAAAAGAGAAGATTATTCAATCGAAGGGAAGCAGGCATGGGAAACCGATGACTCTGGAGTTGGCATCAACGTGAGTTGGGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATGATTTTTTAAAACTATCAAAGCCTAAGAACGTCTTTCATTTTTTAGTTTTAACGTTATTCAATAAAATTTGTCCAATTCATGATATTTAAAAAACTTTYAGACTAAAAAAATTTGAGCGGTGGAAGAGAGAATCCGGCTGGCCGCAGCCTGAGGTTGAATTTGGGAAACTTTTGAAAACTCTGATGTTCAGAAGTTAGGCCAATACAATTTAATTATGAATTCGTTTTTCAGGAGAAATCTCACAGTTGATTCTGGATCAGACCCGGGTGATGCTGTGCCAGTCTCACTATCGGCAATTCTATCAAACGCCATCGTTGGATACGATAATGGAGTGCCAATCATCTACGAGGTCCTGGAGGCACCAGAAGATAATGCCGAAGGTGAGAGCACCGAAGACGAATCCAAGGAGGACGAAGAAACCAAAAATGTGCAAAGCTCTAGCAACGATAACCAAGCCTCACTAGATATGGACGAGATCTTGGTGGAAGATGATTCTGTCACTGGAGCATCGTGCAATGTTATGCTTTCAAAGAACATCAACTTGGCACGCATACAAGTTAGAGAGGCGTTGGATAATGTAGATGCGATGAAAGTGGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>339 230 189 82 70 62 20 8</canonical_bands>
                <polymorphic_bands>339 312 189 70 62 20 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTTTGAAGGAGTTCTAGATAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGTATTGGCCTAACTTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATGATTTTTTAAAACTATCAAAGCCTAAGAACGTCTTTCATTTTTTAGTTTTAACGTTATTCAATAAAATTTGTCCAATTCATGATATTTAAAAAACTTTCAGACTAAAAAAATTTGAGCGGTGGAAGAGAGAATCCGGCTGGCCGCAGCCTGAGGTTGAATTTGGGAAACTTTTGAAAACTCTGATGTTCAGAAGTTAGGCCAATACAAT</canonical_amplicon>
		<polymorphic_amplicon>GGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATGATTTTTTAAAACTATCAAAGCCTAAGAACGTCTTTCATTTTTTAGTTTTAACGTTATTCAATAAAATTTGTCCAATTCATGATATTTAAAAAACTTTYAGACTAAAAAAATTTGAGCGGTGGAAGAGAGAATCCGGCTGGCCGCAGCCTGAGGTTGAATTTGGGAAACTTTTGAAAACTCTGATGTTCAGAAGTTAGGCCAATACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20427</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>936033</contig_pos>
        <strand>+</strand>
        <context>TTTAAAAAAC[A/T]TTYAGACTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTTTAACGTTATTCAATAAAATTTGTCCAATTCATGATATTTAAAAAAC</left_flank>
        <right_flank>TTCAGACTAAAAAAATTTGAGCGGTGGAAGAGAGAATCCGGCTGGCCGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTAATATTCGAAGCGCCATCAGATTTGGTCGAATCAGTGAGAAACCTAGAAGATGATGTCTTAGAAGGTGGGCGAACTTTTCAGAATCGATCAAATTTTCAAAACTTTTAGAAGTATGTAATGAAGAAATCAAGCAACAAGTTCAGTACCTGGAGACAGTTATAGACGGATGGAAAACTTTTGGAAACGTGGATAAAGATACTCGATCGATGATTTGCGTTCTGCTGAAAGCTAGAAAAGCTGGCTTGTTTGAAAAGAGGATTTTGTATTCAGAAACTACTAAAAAAGAGAAGATTATTCAATCGAAGGGAAGCAGGCATGGGAAACCGATGACTCTGGAGTTGGCATCAACGTGAGTTGGGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATGATTTTTTAAAACTATCAAAGCCTAAGAACGTCTTTCATTTTTTAGTTTTAACGTTATTCAATAAAATTTGTCCAATTCATGATATTTAAAAAACTTTCAGACTAAAAAAATTTGAGCGGTGGAAGAGAGAATCCGGCTGGCCGCAGCCTGAGGTTGAATTTGGGAAACTTTTGAAAACTCTGATGTTCAGAAGTTAGGCCAATACAATTTAATTATGAATTCGTTTTTCAGGAGAAATCTCACAGTTGATTCTGGATCAGACCCGGGTGATGCTGTGCCAGTCTCACTATCGGCAATTCTATCAAACGCCATCGTTGGATACGATAATGGAGTGCCAATCATCTACGAGGTCCTGGAGGCACCAGAAGATAATGCCGAAGGTGAGAGCACCGAAGACGAATCCAAGGAGGACGAAGAAACCAAAAATGTGCAAAGCTCTAGCAACGATAACCAAGCCTCACTAGATATGGACGAGATCTTGGTGGAAGATGATTCTGTCACTGGAGCATCGTGCAATGTTATGCTTTCAAAGAACATCAACTTGGCACGCATACAAGTTAGAGAGGCGTTGGATAATGTAGATGCGATGAAAGTG</canonical>
            <polymorphic>CATTAATATTCGAAGCGCCATCAGATTTGGTCGAATCAGTGAGAAACCTAGAAGATGATGTCTTAGAAGGTGGGCGAACTTTTCAGAATCGATCAAATTTTCAAAACTTTTAGAAGTATGTAATGAAGAAATCAAGCAACAAGTTCAGTACCTGGAGACAGTTATAGACGGATGGAAAACTTTTGGAAACGTGGATAAAGATACTCGATCGATGATTTGCGTTCTGCTGAAAGCTAGAAAAGCTGGCTTGTTTGAAAAGAGGATTTTGTATTCAGAAACTACTAAAAAAGAGAAGATTATTCAATCGAAGGGAAGCAGGCATGGGAAACCGATGACTCTGGAGTTGGCATCAACGTGAGTTGGGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATGATTTTTTAAAACTATCAAAGCCTAAGAACGTCTTTCATTTTTTAGTTTTAACGTTATTCAATAAAATTTGTCCAATTCATGATATTTAAAAAACWTTCAGACTAAAAAAATTTGAGCGGTGGAAGAGAGAATCCGGCTGGCCGCAGCCTGAGGTTGAATTTGGGAAACTTTTGAAAACTCTGATGTTCAGAAGTTAGGCCAATACAATTTAATTATGAATTCGTTTTTCAGGAGAAATCTCACAGTTGATTCTGGATCAGACCCGGGTGATGCTGTGCCAGTCTCACTATCGGCAATTCTATCAAACGCCATCGTTGGATACGATAATGGAGTGCCAATCATCTACGAGGTCCTGGAGGCACCAGAAGATAATGCCGAAGGTGAGAGCACCGAAGACGAATCCAAGGAGGACGAAGAAACCAAAAATGTGCAAAGCTCTAGCAACGATAACCAAGCCTCACTAGATATGGACGAGATCTTGGTGGAAGATGATTCTGTCACTGGAGCATCGTGCAATGTTATGCTTTCAAAGAACATCAACTTGGCACGCATACAAGTTAGAGAGGCGTTGGATAATGTAGATGCGATGAAAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTTTGAAGGAGTTCTAGATAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGTATTGGCCTAACTTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATGATTTTTTAAAACTATCAAAGCCTAAGAACGTCTTTCATTTTTTAGTTTTAACGTTATTCAATAAAATTTGTCCAATTCATGATATTTAAAAAACTTTCAGACTAAAAAAATTTGAGCGGTGGAAGAGAGAATCCGGCTGGCCGCAGCCTGAGGTTGAATTTGGGAAACTTTTGAAAACTCTGATGTTCAGAAGTTAGGCCAATACAAT</canonical_amplicon>
		<polymorphic_amplicon>GGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATGATTTTTTAAAACTATCAAAGCCTAAGAACGTCTTTCATTTTTTAGTTTTAACGTTATTCAATAAAATTTGTCCAATTCATGATATTTAAAAAACWTTCAGACTAAAAAAATTTGAGCGGTGGAAGAGAGAATCCGGCTGGCCGCAGCCTGAGGTTGAATTTGGGAAACTTTTGAAAACTCTGATGTTCAGAAGTTAGGCCAATACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20428</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>936019</contig_pos>
        <strand>+</strand>
        <context>TCCAATTCAT[A/G]ATATTTAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTTCATTTTTTAGTTTTAACGTTATTCAATAAAATTTGTCCAATTCAT</left_flank>
        <right_flank>ATATTTAAAAAACTTTCAGACTAAAAAAATTTGAGCGGTGGAAGAGAGAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACAGAAATGCGCACATTAATATTCGAAGCGCCATCAGATTTGGTCGAATCAGTGAGAAACCTAGAAGATGATGTCTTAGAAGGTGGGCGAACTTTTCAGAATCGATCAAATTTTCAAAACTTTTAGAAGTATGTAATGAAGAAATCAAGCAACAAGTTCAGTACCTGGAGACAGTTATAGACGGATGGAAAACTTTTGGAAACGTGGATAAAGATACTCGATCGATGATTTGCGTTCTGCTGAAAGCTAGAAAAGCTGGCTTGTTTGAAAAGAGGATTTTGTATTCAGAAACTACTAAAAAAGAGAAGATTATTCAATCGAAGGGAAGCAGGCATGGGAAACCGATGACTCTGGAGTTGGCATCAACGTGAGTTGGGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATGATTTTTTAAAACTATCAAAGCCTAAGAACGTCTTTCATTTTTTAGTTTTAACGTTATTCAATAAAATTTGTCCAATTCATGATATTTAAAAAACTTTCAGACTAAAAAAATTTGAGCGGTGGAAGAGAGAATCCGGCTGGCCGCAGCCTGAGGTTGAATTTGGGAAACTTTTGAAAACTCTGATGTTCAGAAGTTAGGCCAATACAATTTAATTATGAATTCGTTTTTCAGGAGAAATCTCACAGTTGATTCTGGATCAGACCCGGGTGATGCTGTGCCAGTCTCACTATCGGCAATTCTATCAAACGCCATCGTTGGATACGATAATGGAGTGCCAATCATCTACGAGGTCCTGGAGGCACCAGAAGATAATGCCGAAGGTGAGAGCACCGAAGACGAATCCAAGGAGGACGAAGAAACCAAAAATGTGCAAAGCTCTAGCAACGATAACCAAGCCTCACTAGATATGGACGAGATCTTGGTGGAAGATGATTCTGTCACTGGAGCATCGTGCAATGTTATGCTTTCAAAGAACATCAACTTGGCACGCATACAAGTTAGAGAGGCGTTGGATAATGTAG</canonical>
            <polymorphic>TACAGAAATGCGCACATTAATATTCGAAGCGCCATCAGATTTGGTCGAATCAGTGAGAAACCTAGAAGATGATGTCTTAGAAGGTGGGCGAACTTTTCAGAATCGATCAAATTTTCAAAACTTTTAGAAGTATGTAATGAAGAAATCAAGCAACAAGTTCAGTACCTGGAGACAGTTATAGACGGATGGAAAACTTTTGGAAACGTGGATAAAGATACTCGATCGATGATTTGCGTTCTGCTGAAAGCTAGAAAAGCTGGCTTGTTTGAAAAGAGGATTTTGTATTCAGAAACTACTAAAAAAGAGAAGATTATTCAATCGAAGGGAAGCAGGCATGGGAAACCGATGACTCTGGAGTTGGCATCAACGTGAGTTGGGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATGATTTTTTAAAACTATCAAAGCCTAAGAACGTCTTTCATTTTTTAGTTTTAACGTTATTCAATAAAATTTGTCCAATTCATRATATTTAAAAAACTTTCAGACTAAAAAAATTTGAGCGGTGGAAGAGAGAATCCGGCTGGCCGCAGCCTGAGGTTGAATTTGGGAAACTTTTGAAAACTCTGATGTTCAGAAGTTAGGCCAATACAATTTAATTATGAATTCGTTTTTCAGGAGAAATCTCACAGTTGATTCTGGATCAGACCCGGGTGATGCTGTGCCAGTCTCACTATCGGCAATTCTATCAAACGCCATCGTTGGATACGATAATGGAGTGCCAATCATCTACGAGGTCCTGGAGGCACCAGAAGATAATGCCGAAGGTGAGAGCACCGAAGACGAATCCAAGGAGGACGAAGAAACCAAAAATGTGCAAAGCTCTAGCAACGATAACCAAGCCTCACTAGATATGGACGAGATCTTGGTGGAAGATGATTCTGTCACTGGAGCATCGTGCAATGTTATGCTTTCAAAGAACATCAACTTGGCACGCATACAAGTTAGAGAGGCGTTGGATAATGTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 334 82 81</canonical_bands>
                <polymorphic_bands>584 334 82</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>352 329 151 104 41 23</canonical_bands>
                <polymorphic_bands>352 329 255 41 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTTTGAAGGAGTTCTAGATAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGTATTGGCCTAACTTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATGATTTTTTAAAACTATCAAAGCCTAAGAACGTCTTTCATTTTTTAGTTTTAACGTTATTCAATAAAATTTGTCCAATTCATGATATTTAAAAAACTTTCAGACTAAAAAAATTTGAGCGGTGGAAGAGAGAATCCGGCTGGCCGCAGCCTGAGGTTGAATTTGGGAAACTTTTGAAAACTCTGATGTTCAGAAGTTAGGCCAATACAAT</canonical_amplicon>
		<polymorphic_amplicon>GGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATGATTTTTTAAAACTATCAAAGCCTAAGAACGTCTTTCATTTTTTAGTTTTAACGTTATTCAATAAAATTTGTCCAATTCATRATATTTAAAAAACTTTCAGACTAAAAAAATTTGAGCGGTGGAAGAGAGAATCCGGCTGGCCGCAGCCTGAGGTTGAATTTGGGAAACTTTTGAAAACTCTGATGTTCAGAAGTTAGGCCAATACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20429</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>935965</contig_pos>
        <strand>+</strand>
        <context>AAAGCCTAAG[A/G]ACGTCTTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATAAGAATTTCAAACGAAACATGATTTTTTAAAACTATCAAAGCCTAAG</left_flank>
        <right_flank>ACGTCTTTCATTTTTTAGTTTTAACGTTATTCAATAAAATTTGTCCAATT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGAAATTCCAATTTTAAAGATCTTTTTGCGGCTTAATCTCAAATACCTTTCTTACAGAAATGCGCACATTAATATTCGAAGCGCCATCAGATTTGGTCGAATCAGTGAGAAACCTAGAAGATGATGTCTTAGAAGGTGGGCGAACTTTTCAGAATCGATCAAATTTTCAAAACTTTTAGAAGTATGTAATGAAGAAATCAAGCAACAAGTTCAGTACCTGGAGACAGTTATAGACGGATGGAAAACTTTTGGAAACGTGGATAAAGATACTCGATCGATGATTTGCGTTCTGCTGAAAGCTAGAAAAGCTGGCTTGTTTGAAAAGAGGATTTTGTATTCAGAAACTACTAAAAAAGAGAAGATTATTCAATCGAAGGGAAGCAGGCATGGGAAACCGATGACTCTGGAGTTGGCATCAACGTGAGTTGGGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATGATTTTTTAAAACTATCAAAGCCTAAGAACGTCTTTCATTTTTTAGTTTTAACGTTATTCAATAAAATTTGTCCAATTCATGATATTTAAAAAACTTTCAGACTAAAAAAATTTGAGCGGTGGAAGAGAGAATCCGGCTGGCCGCAGCCTGAGGTTGAATTTGGGAAACTTTTGAAAACTCTGATGTTCAGAAGTTAGGCCAATACAATTTAATTATGAATTCGTTTTTCAGGAGAAATCTCACAGTTGATTCTGGATCAGACCCGGGTGATGCTGTGCCAGTCTCACTATCGGCAATTCTATCAAACGCCATCGTTGGATACGATAATGGAGTGCCAATCATCTACGAGGTCCTGGAGGCACCAGAAGATAATGCCGAAGGTGAGAGCACCGAAGACGAATCCAAGGAGGACGAAGAAACCAAAAATGTGCAAAGCTCTAGCAACGATAACCAAGCCTCACTAGATATGGACGAGATCTTGGTGGAAGATGATTCTGTCACTGGAGCATCGTGCAATGTTATGCTTT</canonical>
            <polymorphic>TTCGAAATTCCAATTTTAAAGATCTTTTTGCGGCTTAATCTCAAATACCTTTCTTACAGAAATGCGCACATTAATATTCGAAGCGCCATCAGATTTGGTCGAATCAGTGAGAAACCTAGAAGATGATGTCTTAGAAGGTGGGCGAACTTTTCAGAATCGATCAAATTTTCAAAACTTTTAGAAGTATGTAATGAAGAAATCAAGCAACAAGTTCAGTACCTGGAGACAGTTATAGACGGATGGAAAACTTTTGGAAACGTGGATAAAGATACTCGATCGATGATTTGCGTTCTGCTGAAAGCTAGAAAAGCTGGCTTGTTTGAAAAGAGGATTTTGTATTCAGAAACTACTAAAAAAGAGAAGATTATTCAATCGAAGGGAAGCAGGCATGGGAAACCGATGACTCTGGAGTTGGCATCAACGTGAGTTGGGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATGATTTTTTAAAACTATCAAAGCCTAAGRACGTCTTTCATTTTTTAGTTTTAACGTTATTCAATAAAATTTGTCCAATTCATGATATTTAAAAAACTTTCAGACTAAAAAAATTTGAGCGGTGGAAGAGAGAATCCGGCTGGCCGCAGCCTGAGGTTGAATTTGGGAAACTTTTGAAAACTCTGATGTTCAGAAGTTAGGCCAATACAATTTAATTATGAATTCGTTTTTCAGGAGAAATCTCACAGTTGATTCTGGATCAGACCCGGGTGATGCTGTGCCAGTCTCACTATCGGCAATTCTATCAAACGCCATCGTTGGATACGATAATGGAGTGCCAATCATCTACGAGGTCCTGGAGGCACCAGAAGATAATGCCGAAGGTGAGAGCACCGAAGACGAATCCAAGGAGGACGAAGAAACCAAAAATGTGCAAAGCTCTAGCAACGATAACCAAGCCTCACTAGATATGGACGAGATCTTGGTGGAAGATGATTCTGTCACTGGAGCATCGTGCAATGTTATGCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTTTGAAGGAGTTCTAGATAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGTATTGGCCTAACTTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATGATTTTTTAAAACTATCAAAGCCTAAGAACGTCTTTCATTTTTTAGTTTTAACGTTATTCAATAAAATTTGTCCAATTCATGATATTTAAAAAACTTTCAGACTAAAAAAATTTGAGCGGTGGAAGAGAGAATCCGGCTGGCCGCAGCCTGAGGTTGAATTTGGGAAACTTTTGAAAACTCTGATGTTCAGAAGTTAGGCCAATACAAT</canonical_amplicon>
		<polymorphic_amplicon>GGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATGATTTTTTAAAACTATCAAAGCCTAAGRACGTCTTTCATTTTTTAGTTTTAACGTTATTCAATAAAATTTGTCCAATTCATGATATTTAAAAAACTTTCAGACTAAAAAAATTTGAGCGGTGGAAGAGAGAATCCGGCTGGCCGCAGCCTGAGGTTGAATTTGGGAAACTTTTGAAAACTCTGATGTTCAGAAGTTAGGCCAATACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20430</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>935946</contig_pos>
        <strand>+</strand>
        <context>ATGATTTTTT[A/T]AAACTATCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATGATTTTTT</left_flank>
        <right_flank>AAACTATCAAAGCCTAAGAACGTCTTTCATTTTTTAGTTTTAACGTTATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATATCTACTTGTGCACCGTTCGAAATTCCAATTTTAAAGATCTTTTTGCGGCTTAATCTCAAATACCTTTCTTACAGAAATGCGCACATTAATATTCGAAGCGCCATCAGATTTGGTCGAATCAGTGAGAAACCTAGAAGATGATGTCTTAGAAGGTGGGCGAACTTTTCAGAATCGATCAAATTTTCAAAACTTTTAGAAGTATGTAATGAAGAAATCAAGCAACAAGTTCAGTACCTGGAGACAGTTATAGACGGATGGAAAACTTTTGGAAACGTGGATAAAGATACTCGATCGATGATTTGCGTTCTGCTGAAAGCTAGAAAAGCTGGCTTGTTTGAAAAGAGGATTTTGTATTCAGAAACTACTAAAAAAGAGAAGATTATTCAATCGAAGGGAAGCAGGCATGGGAAACCGATGACTCTGGAGTTGGCATCAACGTGAGTTGGGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATGATTTTTTAAAACTATCAAAGCCTAAGAACGTCTTTCATTTTTTAGTTTTAACGTTATTCAATAAAATTTGTCCAATTCATGATATTTAAAAAACTTTCAGACTAAAAAAATTTGAGCGGTGGAAGAGAGAATCCGGCTGGCCGCAGCCTGAGGTTGAATTTGGGAAACTTTTGAAAACTCTGATGTTCAGAAGTTAGGCCAATACAATTTAATTATGAATTCGTTTTTCAGGAGAAATCTCACAGTTGATTCTGGATCAGACCCGGGTGATGCTGTGCCAGTCTCACTATCGGCAATTCTATCAAACGCCATCGTTGGATACGATAATGGAGTGCCAATCATCTACGAGGTCCTGGAGGCACCAGAAGATAATGCCGAAGGTGAGAGCACCGAAGACGAATCCAAGGAGGACGAAGAAACCAAAAATGTGCAAAGCTCTAGCAACGATAACCAAGCCTCACTAGATATGGACGAGATCTTGGTGGAAGATGATTCTGTCACTGGAGCA</canonical>
            <polymorphic>GATATCTACTTGTGCACCGTTCGAAATTCCAATTTTAAAGATCTTTTTGCGGCTTAATCTCAAATACCTTTCTTACAGAAATGCGCACATTAATATTCGAAGCGCCATCAGATTTGGTCGAATCAGTGAGAAACCTAGAAGATGATGTCTTAGAAGGTGGGCGAACTTTTCAGAATCGATCAAATTTTCAAAACTTTTAGAAGTATGTAATGAAGAAATCAAGCAACAAGTTCAGTACCTGGAGACAGTTATAGACGGATGGAAAACTTTTGGAAACGTGGATAAAGATACTCGATCGATGATTTGCGTTCTGCTGAAAGCTAGAAAAGCTGGCTTGTTTGAAAAGAGGATTTTGTATTCAGAAACTACTAAAAAAGAGAAGATTATTCAATCGAAGGGAAGCAGGCATGGGAAACCGATGACTCTGGAGTTGGCATCAACGTGAGTTGGGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATGATTTTTTWAAACTATCAAAGCCTAAGAACGTCTTTCATTTTTTAGTTTTAACGTTATTCAATAAAATTTGTCCAATTCATGATATTTAAAAAACTTTCAGACTAAAAAAATTTGAGCGGTGGAAGAGAGAATCCGGCTGGCCGCAGCCTGAGGTTGAATTTGGGAAACTTTTGAAAACTCTGATGTTCAGAAGTTAGGCCAATACAATTTAATTATGAATTCGTTTTTCAGGAGAAATCTCACAGTTGATTCTGGATCAGACCCGGGTGATGCTGTGCCAGTCTCACTATCGGCAATTCTATCAAACGCCATCGTTGGATACGATAATGGAGTGCCAATCATCTACGAGGTCCTGGAGGCACCAGAAGATAATGCCGAAGGTGAGAGCACCGAAGACGAATCCAAGGAGGACGAAGAAACCAAAAATGTGCAAAGCTCTAGCAACGATAACCAAGCCTCACTAGATATGGACGAGATCTTGGTGGAAGATGATTCTGTCACTGGAGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>463 421 80 36</canonical_bands>
                <polymorphic_bands>543 421 36</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>408 299 123 42 38 36 35 19</canonical_bands>
                <polymorphic_bands>450 299 123 38 36 35 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTTTGAAAAGAGGATTTTGTA</pcr_primer_p1>
		<pcr_primer_p2>ATGAATTGGACAAATTTTATTGA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TTGTTTGAAAAGAGGATTTTGTATTCAGAAACTACTAAAAAAGAGAAGATTATTCAATCGAAGGGAAGCAGGCATGGGAAACCGATGACTCTGGAGTTGGCATCAACGTGAGTTGGGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATGATTTTTTAAAACTATCAAAGCCTAAGAACGTCTTTCATTTTTTAGTTTTAACGTTATTCAATAAAATTTGTCCAATTCAT</canonical_amplicon>
		<polymorphic_amplicon>TTGTTTGAAAAGAGGATTTTGTATTCAGAAACTACTAAAAAAGAGAAGATTATTCAATCGAAGGGAAGCAGGCATGGGAAACCGATGACTCTGGAGTTGGCATCAACGTGAGTTGGGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATGATTTTTTWAAACTATCAAAGCCTAAGAACGTCTTTCATTTTTTAGTTTTAACGTTATTCAATAAAATTTGTCCAATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20431</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>935845</contig_pos>
        <strand>+</strand>
        <context>CAATCGAAGG[A/G]AAGCAGGCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTTTGTATTCAGAAACTACTAAAAAAGAGAAGATTATTCAATCGAAGG</left_flank>
        <right_flank>AAGCAGGCATGGGAAACCGATGACTCTGGAGTTGGCATCAACGTGAGTTG</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTCCCCGTGTTGGAAAAGCCGCATGTGTGTGTGTGTTGTGACTCTTTTCTCTCTTCCACTTATTTTTTTTTCTTCAACACGCTGCGTCTTGTGTCTTTCGATATCTACTTGTGCACCGTTCGAAATTCCAATTTTAAAGATCTTTTTGCGGCTTAATCTCAAATACCTTTCTTACAGAAATGCGCACATTAATATTCGAAGCGCCATCAGATTTGGTCGAATCAGTGAGAAACCTAGAAGATGATGTCTTAGAAGGTGGGCGAACTTTTCAGAATCGATCAAATTTTCAAAACTTTTAGAAGTATGTAATGAAGAAATCAAGCAACAAGTTCAGTACCTGGAGACAGTTATAGACGGATGGAAAACTTTTGGAAACGTGGATAAAGATACTCGATCGATGATTTGCGTTCTGCTGAAAGCTAGAAAAGCTGGCTTGTTTGAAAAGAGGATTTTGTATTCAGAAACTACTAAAAAAGAGAAGATTATTCAATCGAAGGGAAGCAGGCATGGGAAACCGATGACTCTGGAGTTGGCATCAACGTGAGTTGGGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATGATTTTTTAAAACTATCAAAGCCTAAGAACGTCTTTCATTTTTTAGTTTTAACGTTATTCAATAAAATTTGTCCAATTCATGATATTTAAAAAACTTTCAGACTAAAAAAATTTGAGCGGTGGAAGAGAGAATCCGGCTGGCCGCAGCCTGAGGTTGAATTTGGGAAACTTTTGAAAACTCTGATGTTCAGAAGTTAGGCCAATACAATTTAATTATGAATTCGTTTTTCAGGAGAAATCTCACAGTTGATTCTGGATCAGACCCGGGTGATGCTGTGCCAGTCTCACTATCGGCAATTCTATCAAACGCCATCGTTGGATACGATAATGGAGTGCCAATCATCTACGAGGTCCTGGAGGCACCAGAAGATAATGCCGAAGGTGAGAGCACCGAAGACGAATCCAAGG</canonical>
            <polymorphic>CCTTCCCCGTGTTGGAAAAGCCGCATGTGTGTGTGTGTTGTGACTCTTTTCTCTCTTCCACTTATTTTTTTTTCTTCAACACGCTGCGTCTTGTGTCTTTCGATATCTACTTGTGCACCGTTCGAAATTCCAATTTTAAAGATCTTTTTGCGGCTTAATCTCAAATACCTTTCTTACAGAAATGCGCACATTAATATTCGAAGCGCCATCAGATTTGGTCGAATCAGTGAGAAACCTAGAAGATGATGTCTTAGAAGGTGGGCGAACTTTTCAGAATCGATCAAATTTTCAAAACTTTTAGAAGTATGTAATGAAGAAATCAAGCAACAAGTTCAGTACCTGGAGACAGTTATAGACGGATGGAAAACTTTTGGAAACGTGGATAAAGATACTCGATCGATGATTTGCGTTCTGCTGAAAGCTAGAAAAGCTGGCTTGTTTGAAAAGAGGATTTTGTATTCAGAAACTACTAAAAAAGAGAAGATTATTCAATCGAAGGRAAGCAGGCATGGGAAACCGATGACTCTGGAGTTGGCATCAACGTGAGTTGGGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATGATTTTTTAAAACTATCAAAGCCTAAGAACGTCTTTCATTTTTTAGTTTTAACGTTATTCAATAAAATTTGTCCAATTCATGATATTTAAAAAACTTTCAGACTAAAAAAATTTGAGCGGTGGAAGAGAGAATCCGGCTGGCCGCAGCCTGAGGTTGAATTTGGGAAACTTTTGAAAACTCTGATGTTCAGAAGTTAGGCCAATACAATTTAATTATGAATTCGTTTTTCAGGAGAAATCTCACAGTTGATTCTGGATCAGACCCGGGTGATGCTGTGCCAGTCTCACTATCGGCAATTCTATCAAACGCCATCGTTGGATACGATAATGGAGTGCCAATCATCTACGAGGTCCTGGAGGCACCAGAAGATAATGCCGAAGGTGAGAGCACCGAAGACGAATCCAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTATAGACGGATGGAAAACTT</pcr_primer_p1>
		<pcr_primer_p2>CATGTTTCGTTTGAAATTCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGTTATAGACGGATGGAAAACTTTTGGAAACGTGGATAAAGATACTCGATCGATGATTTGCGTTCTGCTGAAAGCTAGAAAAGCTGGCTTGTTTGAAAAGAGGATTTTGTATTCAGAAACTACTAAAAAAGAGAAGATTATTCAATCGAAGGGAAGCAGGCATGGGAAACCGATGACTCTGGAGTTGGCATCAACGTGAGTTGGGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATG</canonical_amplicon>
		<polymorphic_amplicon>AGTTATAGACGGATGGAAAACTTTTGGAAACGTGGATAAAGATACTCGATCGATGATTTGCGTTCTGCTGAAAGCTAGAAAAGCTGGCTTGTTTGAAAAGAGGATTTTGTATTCAGAAACTACTAAAAAAGAGAAGATTATTCAATCGAAGGRAAGCAGGCATGGGAAACCGATGACTCTGGAGTTGGCATCAACGTGAGTTGGGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20432</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>935834</contig_pos>
        <strand>+</strand>
        <context>AGAAGATTAT[A/T]CAATCGAAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGAAAAGAGGATTTTGTATTCAGAAACTACTAAAAAAGAGAAGATTAT</left_flank>
        <right_flank>CAATCGAAGGGAAGCAGGCATGGGAAACCGATGACTCTGGAGTTGGCATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAACGAGCTCCCTTCCCCGTGTTGGAAAAGCCGCATGTGTGTGTGTGTTGTGACTCTTTTCTCTCTTCCACTTATTTTTTTTTCTTCAACACGCTGCGTCTTGTGTCTTTCGATATCTACTTGTGCACCGTTCGAAATTCCAATTTTAAAGATCTTTTTGCGGCTTAATCTCAAATACCTTTCTTACAGAAATGCGCACATTAATATTCGAAGCGCCATCAGATTTGGTCGAATCAGTGAGAAACCTAGAAGATGATGTCTTAGAAGGTGGGCGAACTTTTCAGAATCGATCAAATTTTCAAAACTTTTAGAAGTATGTAATGAAGAAATCAAGCAACAAGTTCAGTACCTGGAGACAGTTATAGACGGATGGAAAACTTTTGGAAACGTGGATAAAGATACTCGATCGATGATTTGCGTTCTGCTGAAAGCTAGAAAAGCTGGCTTGTTTGAAAAGAGGATTTTGTATTCAGAAACTACTAAAAAAGAGAAGATTATTCAATCGAAGGGAAGCAGGCATGGGAAACCGATGACTCTGGAGTTGGCATCAACGTGAGTTGGGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATGATTTTTTAAAACTATCAAAGCCTAAGAACGTCTTTCATTTTTTAGTTTTAACGTTATTCAATAAAATTTGTCCAATTCATGATATTTAAAAAACTTTCAGACTAAAAAAATTTGAGCGGTGGAAGAGAGAATCCGGCTGGCCGCAGCCTGAGGTTGAATTTGGGAAACTTTTGAAAACTCTGATGTTCAGAAGTTAGGCCAATACAATTTAATTATGAATTCGTTTTTCAGGAGAAATCTCACAGTTGATTCTGGATCAGACCCGGGTGATGCTGTGCCAGTCTCACTATCGGCAATTCTATCAAACGCCATCGTTGGATACGATAATGGAGTGCCAATCATCTACGAGGTCCTGGAGGCACCAGAAGATAATGCCGAAGGTGAGAGCACCGAAGA</canonical>
            <polymorphic>GAAACGAGCTCCCTTCCCCGTGTTGGAAAAGCCGCATGTGTGTGTGTGTTGTGACTCTTTTCTCTCTTCCACTTATTTTTTTTTCTTCAACACGCTGCGTCTTGTGTCTTTCGATATCTACTTGTGCACCGTTCGAAATTCCAATTTTAAAGATCTTTTTGCGGCTTAATCTCAAATACCTTTCTTACAGAAATGCGCACATTAATATTCGAAGCGCCATCAGATTTGGTCGAATCAGTGAGAAACCTAGAAGATGATGTCTTAGAAGGTGGGCGAACTTTTCAGAATCGATCAAATTTTCAAAACTTTTAGAAGTATGTAATGAAGAAATCAAGCAACAAGTTCAGTACCTGGAGACAGTTATAGACGGATGGAAAACTTTTGGAAACGTGGATAAAGATACTCGATCGATGATTTGCGTTCTGCTGAAAGCTAGAAAAGCTGGCTTGTTTGAAAAGAGGATTTTGTATTCAGAAACTACTAAAAAAGAGAAGATTATWCAATCGAAGGGAAGCAGGCATGGGAAACCGATGACTCTGGAGTTGGCATCAACGTGAGTTGGGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATGATTTTTTAAAACTATCAAAGCCTAAGAACGTCTTTCATTTTTTAGTTTTAACGTTATTCAATAAAATTTGTCCAATTCATGATATTTAAAAAACTTTCAGACTAAAAAAATTTGAGCGGTGGAAGAGAGAATCCGGCTGGCCGCAGCCTGAGGTTGAATTTGGGAAACTTTTGAAAACTCTGATGTTCAGAAGTTAGGCCAATACAATTTAATTATGAATTCGTTTTTCAGGAGAAATCTCACAGTTGATTCTGGATCAGACCCGGGTGATGCTGTGCCAGTCTCACTATCGGCAATTCTATCAAACGCCATCGTTGGATACGATAATGGAGTGCCAATCATCTACGAGGTCCTGGAGGCACCAGAAGATAATGCCGAAGGTGAGAGCACCGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTATAGACGGATGGAAAACTT</pcr_primer_p1>
		<pcr_primer_p2>CATGTTTCGTTTGAAATTCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGTTATAGACGGATGGAAAACTTTTGGAAACGTGGATAAAGATACTCGATCGATGATTTGCGTTCTGCTGAAAGCTAGAAAAGCTGGCTTGTTTGAAAAGAGGATTTTGTATTCAGAAACTACTAAAAAAGAGAAGATTATTCAATCGAAGGGAAGCAGGCATGGGAAACCGATGACTCTGGAGTTGGCATCAACGTGAGTTGGGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATG</canonical_amplicon>
		<polymorphic_amplicon>AGTTATAGACGGATGGAAAACTTTTGGAAACGTGGATAAAGATACTCGATCGATGATTTGCGTTCTGCTGAAAGCTAGAAAAGCTGGCTTGTTTGAAAAGAGGATTTTGTATTCAGAAACTACTAAAAAAGAGAAGATTATWCAATCGAAGGGAAGCAGGCATGGGAAACCGATGACTCTGGAGTTGGCATCAACGTGAGTTGGGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20433</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>935817</contig_pos>
        <strand>+</strand>
        <context>AGAAACTACT[A/G]AAAAAGAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAGAAAAGCTGGCTTGTTTGAAAAGAGGATTTTGTATTCAGAAACTACT</left_flank>
        <right_flank>AAAAAGAGAAGATTATTCAATCGAAGGGAAGCAGGCATGGGAAACCGATG</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCCCCCCCCCTTATATGAAACGAGCTCCCTTCCCCGTGTTGGAAAAGCCGCATGTGTGTGTGTGTTGTGACTCTTTTCTCTCTTCCACTTATTTTTTTTTCTTCAACACGCTGCGTCTTGTGTCTTTCGATATCTACTTGTGCACCGTTCGAAATTCCAATTTTAAAGATCTTTTTGCGGCTTAATCTCAAATACCTTTCTTACAGAAATGCGCACATTAATATTCGAAGCGCCATCAGATTTGGTCGAATCAGTGAGAAACCTAGAAGATGATGTCTTAGAAGGTGGGCGAACTTTTCAGAATCGATCAAATTTTCAAAACTTTTAGAAGTATGTAATGAAGAAATCAAGCAACAAGTTCAGTACCTGGAGACAGTTATAGACGGATGGAAAACTTTTGGAAACGTGGATAAAGATACTCGATCGATGATTTGCGTTCTGCTGAAAGCTAGAAAAGCTGGCTTGTTTGAAAAGAGGATTTTGTATTCAGAAACTACTAAAAAAGAGAAGATTATTCAATCGAAGGGAAGCAGGCATGGGAAACCGATGACTCTGGAGTTGGCATCAACGTGAGTTGGGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATGATTTTTTAAAACTATCAAAGCCTAAGAACGTCTTTCATTTTTTAGTTTTAACGTTATTCAATAAAATTTGTCCAATTCATGATATTTAAAAAACTTTCAGACTAAAAAAATTTGAGCGGTGGAAGAGAGAATCCGGCTGGCCGCAGCCTGAGGTTGAATTTGGGAAACTTTTGAAAACTCTGATGTTCAGAAGTTAGGCCAATACAATTTAATTATGAATTCGTTTTTCAGGAGAAATCTCACAGTTGATTCTGGATCAGACCCGGGTGATGCTGTGCCAGTCTCACTATCGGCAATTCTATCAAACGCCATCGTTGGATACGATAATGGAGTGCCAATCATCTACGAGGTCCTGGAGGCACCAGAAGATAATGCCGAA</canonical>
            <polymorphic>CCCCCCCCCCCTTATATGAAACGAGCTCCCTTCCCCGTGTTGGAAAAGCCGCATGTGTGTGTGTGTTGTGACTCTTTTCTCTCTTCCACTTATTTTTTTTTCTTCAACACGCTGCGTCTTGTGTCTTTCGATATCTACTTGTGCACCGTTCGAAATTCCAATTTTAAAGATCTTTTTGCGGCTTAATCTCAAATACCTTTCTTACAGAAATGCGCACATTAATATTCGAAGCGCCATCAGATTTGGTCGAATCAGTGAGAAACCTAGAAGATGATGTCTTAGAAGGTGGGCGAACTTTTCAGAATCGATCAAATTTTCAAAACTTTTAGAAGTATGTAATGAAGAAATCAAGCAACAAGTTCAGTACCTGGAGACAGTTATAGACGGATGGAAAACTTTTGGAAACGTGGATAAAGATACTCGATCGATGATTTGCGTTCTGCTGAAAGCTAGAAAAGCTGGCTTGTTTGAAAAGAGGATTTTGTATTCAGAAACTACTRAAAAAGAGAAGATTATTCAATCGAAGGGAAGCAGGCATGGGAAACCGATGACTCTGGAGTTGGCATCAACGTGAGTTGGGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATGATTTTTTAAAACTATCAAAGCCTAAGAACGTCTTTCATTTTTTAGTTTTAACGTTATTCAATAAAATTTGTCCAATTCATGATATTTAAAAAACTTTCAGACTAAAAAAATTTGAGCGGTGGAAGAGAGAATCCGGCTGGCCGCAGCCTGAGGTTGAATTTGGGAAACTTTTGAAAACTCTGATGTTCAGAAGTTAGGCCAATACAATTTAATTATGAATTCGTTTTTCAGGAGAAATCTCACAGTTGATTCTGGATCAGACCCGGGTGATGCTGTGCCAGTCTCACTATCGGCAATTCTATCAAACGCCATCGTTGGATACGATAATGGAGTGCCAATCATCTACGAGGTCCTGGAGGCACCAGAAGATAATGCCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTATAGACGGATGGAAAACTT</pcr_primer_p1>
		<pcr_primer_p2>CATGTTTCGTTTGAAATTCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGTTATAGACGGATGGAAAACTTTTGGAAACGTGGATAAAGATACTCGATCGATGATTTGCGTTCTGCTGAAAGCTAGAAAAGCTGGCTTGTTTGAAAAGAGGATTTTGTATTCAGAAACTACTAAAAAAGAGAAGATTATTCAATCGAAGGGAAGCAGGCATGGGAAACCGATGACTCTGGAGTTGGCATCAACGTGAGTTGGGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATG</canonical_amplicon>
		<polymorphic_amplicon>AGTTATAGACGGATGGAAAACTTTTGGAAACGTGGATAAAGATACTCGATCGATGATTTGCGTTCTGCTGAAAGCTAGAAAAGCTGGCTTGTTTGAAAAGAGGATTTTGTATTCAGAAACTACTRAAAAAGAGAAGATTATTCAATCGAAGGGAAGCAGGCATGGGAAACCGATGACTCTGGAGTTGGCATCAACGTGAGTTGGGTTTTTGAAGGAGTTCTAGATAAGAATTTCAAACGAAACATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20437</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>938300</contig_pos>
        <strand></strand>
        <context>WAGTTTKWAA[A/G]RAAAGTTCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAA</left_flank>
        <right_flank>AAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCGCATTTTTCAATTTTCATAAAACTGCTTTTCAGTCTAAGCATCATCATGCTGAAAACTACATCGAGATGTATAAATACTTCCAACAAAATCTCAGCTTCAAAATTGCTCACGTCATCGCTGGCTTCATACCGTTCGAGCATCTCCCGGAAGCCGAATTCGAGCGAACCATGCTCATCCAGTACCAGCATGGAAATTATTCCGAGGATTTCAATGACGAACAACCCGAGCCACTCTCTTGCTGATTCAATTTTTCCTATCATAATAAGTTACTTGTTATCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCGCTGATTTTTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAGCAGCTTTTCTAGCTGAAAACAACACCAAACTAATATCAATATTGTTTTCTTACCTACCATTATTATAATTTGTAGTCATTTGCTCAATGATGGGCTCTCGATGTTTCCGCAAATGTCCGCAGAAGAACTCGTCGAATTCGAGATGAAACCGCCAGCCCTTGTCAGTATAGTAGAACATTTTCAAAGTGTGCATAAACAGTTTGTAGTAGCTGTGATCGACGATTATTTGCTTATCTCGCTAGAAAAACAAGGGGTTTCGTTGTGAGAGCTTTCGTAAACTAACGCTCTCTCCAACAGACTCGATATAGTCTATCAAATCATCATAATCAGCACCGAAATAGTCGCACGCAGTGGTTAGGAACATTTTCTCTTGTGGGCAGATCAGATGGTGCACATTTGTCATA</canonical>
            <polymorphic>TTGCGCATTTTTCAATTTTCATAAAACTGCTTTTCAGTCTAAGCATCATCATGCTGAAAACTACATCGAGATGTATAAATACTTCCAACAAAATCTCAGCTTCAAAATTGCTCACGTCATCGCTGGCTTCATACCGTTCGAGCATCTCCCGGAAGCCGAATTCGAGCGAACCATGCTCATCCAGTACCAGCATGGAAATTATTCCGAGGATTTCAATGACGAACAACCCGAGCCACTCTCTTGCTGATTCAATTTTTCCTATCATAATAAGTTACTTGTTATCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCGCTGATTTTTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAARAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAGCAGCTTTTCTAGCTGAAAACAACACCAAACTAATATCAATATTGTTTTCTTACCTACCATTATTATAATTTGTAGTCATTTGCTCAATGATGGGCTCTCGATGTTTCCGCAAATGTCCGCAGAAGAACTCGTCGAATTCGAGATGAAACCGCCAGCCCTTGTCAGTATAGTAGAACATTTTCAAAGTGTGCATAAACAGTTTGTAGTAGCTGTGATCGACGATTATTTGCTTATCTCGCTAGAAAAACAAGGGGTTTCGTTGTGAGAGCTTTCGTAAACTAACGCTCTCTCCAACAGACTCGATATAGTCTATCAAATCATCATAATCAGCACCGAAATAGTCGCACGCAGTGGTTAGGAACATTTTCTCTTGTGGGCAGATCAGATGGTGCACATTTGTCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGACAACTGTGACTGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTCAAGAACATCGAGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAG</canonical_amplicon>
		<polymorphic_amplicon>TCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAARAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20438</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>938296</contig_pos>
        <strand>+</strand>
        <context>SSAWWAGTTT[G/T/A]WAARRAAAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T/A</alleles>
        <left_flank>CAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTT</left_flank>
        <right_flank>AAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTTGCGCATTTTTCAATTTTCATAAAACTGCTTTTCAGTCTAAGCATCATCATGCTGAAAACTACATCGAGATGTATAAATACTTCCAACAAAATCTCAGCTTCAAAATTGCTCACGTCATCGCTGGCTTCATACCGTTCGAGCATCTCCCGGAAGCCGAATTCGAGCGAACCATGCTCATCCAGTACCAGCATGGAAATTATTCCGAGGATTTCAATGACGAACAACCCGAGCCACTCTCTTGCTGATTCAATTTTTCCTATCATAATAAGTTACTTGTTATCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCGCTGATTTTTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAGCAGCTTTTCTAGCTGAAAACAACACCAAACTAATATCAATATTGTTTTCTTACCTACCATTATTATAATTTGTAGTCATTTGCTCAATGATGGGCTCTCGATGTTTCCGCAAATGTCCGCAGAAGAACTCGTCGAATTCGAGATGAAACCGCCAGCCCTTGTCAGTATAGTAGAACATTTTCAAAGTGTGCATAAACAGTTTGTAGTAGCTGTGATCGACGATTATTTGCTTATCTCGCTAGAAAAACAAGGGGTTTCGTTGTGAGAGCTTTCGTAAACTAACGCTCTCTCCAACAGACTCGATATAGTCTATCAAATCATCATAATCAGCACCGAAATAGTCGCACGCAGTGGTTAGGAACATTTTCTCTTGTGGGCAGATCAGATGGTGCACATTTGT</canonical>
            <polymorphic>CTTTTTGCGCATTTTTCAATTTTCATAAAACTGCTTTTCAGTCTAAGCATCATCATGCTGAAAACTACATCGAGATGTATAAATACTTCCAACAAAATCTCAGCTTCAAAATTGCTCACGTCATCGCTGGCTTCATACCGTTCGAGCATCTCCCGGAAGCCGAATTCGAGCGAACCATGCTCATCCAGTACCAGCATGGAAATTATTCCGAGGATTTCAATGACGAACAACCCGAGCCACTCTCTTGCTGATTCAATTTTTCCTATCATAATAAGTTACTTGTTATCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCGCTGATTTTTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTKAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAGCAGCTTTTCTAGCTGAAAACAACACCAAACTAATATCAATATTGTTTTCTTACCTACCATTATTATAATTTGTAGTCATTTGCTCAATGATGGGCTCTCGATGTTTCCGCAAATGTCCGCAGAAGAACTCGTCGAATTCGAGATGAAACCGCCAGCCCTTGTCAGTATAGTAGAACATTTTCAAAGTGTGCATAAACAGTTTGTAGTAGCTGTGATCGACGATTATTTGCTTATCTCGCTAGAAAAACAAGGGGTTTCGTTGTGAGAGCTTTCGTAAACTAACGCTCTCTCCAACAGACTCGATATAGTCTATCAAATCATCATAATCAGCACCGAAATAGTCGCACGCAGTGGTTAGGAACATTTTCTCTTGTGGGCAGATCAGATGGTGCACATTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 407 93</canonical_bands>
                <polymorphic_bands>593 407</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>501 406 93</canonical_bands>
                <polymorphic_bands>594 406</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGACAACTGTGACTGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTCAAGAACATCGAGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAG</canonical_amplicon>
		<polymorphic_amplicon>TCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTKAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20440</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>938289</contig_pos>
        <strand></strand>
        <context>TTATCTGSSA[A/T]WAGTTTKWAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAA</left_flank>
        <right_flank>GAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGGACTTTTTGCGCATTTTTCAATTTTCATAAAACTGCTTTTCAGTCTAAGCATCATCATGCTGAAAACTACATCGAGATGTATAAATACTTCCAACAAAATCTCAGCTTCAAAATTGCTCACGTCATCGCTGGCTTCATACCGTTCGAGCATCTCCCGGAAGCCGAATTCGAGCGAACCATGCTCATCCAGTACCAGCATGGAAATTATTCCGAGGATTTCAATGACGAACAACCCGAGCCACTCTCTTGCTGATTCAATTTTTCCTATCATAATAAGTTACTTGTTATCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCGCTGATTTTTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAGCAGCTTTTCTAGCTGAAAACAACACCAAACTAATATCAATATTGTTTTCTTACCTACCATTATTATAATTTGTAGTCATTTGCTCAATGATGGGCTCTCGATGTTTCCGCAAATGTCCGCAGAAGAACTCGTCGAATTCGAGATGAAACCGCCAGCCCTTGTCAGTATAGTAGAACATTTTCAAAGTGTGCATAAACAGTTTGTAGTAGCTGTGATCGACGATTATTTGCTTATCTCGCTAGAAAAACAAGGGGTTTCGTTGTGAGAGCTTTCGTAAACTAACGCTCTCTCCAACAGACTCGATATAGTCTATCAAATCATCATAATCAGCACCGAAATAGTCGCACGCAGTGGTTAGGAACATTTTCTCTTGTGGGCAGATCAGATGGTGCA</canonical>
            <polymorphic>TTTTGGACTTTTTGCGCATTTTTCAATTTTCATAAAACTGCTTTTCAGTCTAAGCATCATCATGCTGAAAACTACATCGAGATGTATAAATACTTCCAACAAAATCTCAGCTTCAAAATTGCTCACGTCATCGCTGGCTTCATACCGTTCGAGCATCTCCCGGAAGCCGAATTCGAGCGAACCATGCTCATCCAGTACCAGCATGGAAATTATTCCGAGGATTTCAATGACGAACAACCCGAGCCACTCTCTTGCTGATTCAATTTTTCCTATCATAATAAGTTACTTGTTATCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCGCTGATTTTTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAWGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAGCAGCTTTTCTAGCTGAAAACAACACCAAACTAATATCAATATTGTTTTCTTACCTACCATTATTATAATTTGTAGTCATTTGCTCAATGATGGGCTCTCGATGTTTCCGCAAATGTCCGCAGAAGAACTCGTCGAATTCGAGATGAAACCGCCAGCCCTTGTCAGTATAGTAGAACATTTTCAAAGTGTGCATAAACAGTTTGTAGTAGCTGTGATCGACGATTATTTGCTTATCTCGCTAGAAAAACAAGGGGTTTCGTTGTGAGAGCTTTCGTAAACTAACGCTCTCTCCAACAGACTCGATATAGTCTATCAAATCATCATAATCAGCACCGAAATAGTCGCACGCAGTGGTTAGGAACATTTTCTCTTGTGGGCAGATCAGATGGTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGACAACTGTGACTGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTCAAGAACATCGAGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAG</canonical_amplicon>
		<polymorphic_amplicon>TCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAWGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20441</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>938286</contig_pos>
        <strand></strand>
        <context>AAATTATCTG[C/G]SAWWAGTTTK</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTG</left_flank>
        <right_flank>AAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGTTTTGGACTTTTTGCGCATTTTTCAATTTTCATAAAACTGCTTTTCAGTCTAAGCATCATCATGCTGAAAACTACATCGAGATGTATAAATACTTCCAACAAAATCTCAGCTTCAAAATTGCTCACGTCATCGCTGGCTTCATACCGTTCGAGCATCTCCCGGAAGCCGAATTCGAGCGAACCATGCTCATCCAGTACCAGCATGGAAATTATTCCGAGGATTTCAATGACGAACAACCCGAGCCACTCTCTTGCTGATTCAATTTTTCCTATCATAATAAGTTACTTGTTATCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCGCTGATTTTTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAGCAGCTTTTCTAGCTGAAAACAACACCAAACTAATATCAATATTGTTTTCTTACCTACCATTATTATAATTTGTAGTCATTTGCTCAATGATGGGCTCTCGATGTTTCCGCAAATGTCCGCAGAAGAACTCGTCGAATTCGAGATGAAACCGCCAGCCCTTGTCAGTATAGTAGAACATTTTCAAAGTGTGCATAAACAGTTTGTAGTAGCTGTGATCGACGATTATTTGCTTATCTCGCTAGAAAAACAAGGGGTTTCGTTGTGAGAGCTTTCGTAAACTAACGCTCTCTCCAACAGACTCGATATAGTCTATCAAATCATCATAATCAGCACCGAAATAGTCGCACGCAGTGGTTAGGAACATTTTCTCTTGTGGGCAGATCAGATGGT</canonical>
            <polymorphic>GTGTTTTGGACTTTTTGCGCATTTTTCAATTTTCATAAAACTGCTTTTCAGTCTAAGCATCATCATGCTGAAAACTACATCGAGATGTATAAATACTTCCAACAAAATCTCAGCTTCAAAATTGCTCACGTCATCGCTGGCTTCATACCGTTCGAGCATCTCCCGGAAGCCGAATTCGAGCGAACCATGCTCATCCAGTACCAGCATGGAAATTATTCCGAGGATTTCAATGACGAACAACCCGAGCCACTCTCTTGCTGATTCAATTTTTCCTATCATAATAAGTTACTTGTTATCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCGCTGATTTTTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGSAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAGCAGCTTTTCTAGCTGAAAACAACACCAAACTAATATCAATATTGTTTTCTTACCTACCATTATTATAATTTGTAGTCATTTGCTCAATGATGGGCTCTCGATGTTTCCGCAAATGTCCGCAGAAGAACTCGTCGAATTCGAGATGAAACCGCCAGCCCTTGTCAGTATAGTAGAACATTTTCAAAGTGTGCATAAACAGTTTGTAGTAGCTGTGATCGACGATTATTTGCTTATCTCGCTAGAAAAACAAGGGGTTTCGTTGTGAGAGCTTTCGTAAACTAACGCTCTCTCCAACAGACTCGATATAGTCTATCAAATCATCATAATCAGCACCGAAATAGTCGCACGCAGTGGTTAGGAACATTTTCTCTTGTGGGCAGATCAGATGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>440 301 200 59</canonical_bands>
                <polymorphic_bands>440 360 200</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGACAACTGTGACTGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTCAAGAACATCGAGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAG</canonical_amplicon>
		<polymorphic_amplicon>TCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGSAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20442</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>938267</contig_pos>
        <strand>+</strand>
        <context>GTTGTCAAAA[A/C]GCATGTAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAA</left_flank>
        <right_flank>GCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGTACGATTTCGGACAAGGTGTTTTGGACTTTTTGCGCATTTTTCAATTTTCATAAAACTGCTTTTCAGTCTAAGCATCATCATGCTGAAAACTACATCGAGATGTATAAATACTTCCAACAAAATCTCAGCTTCAAAATTGCTCACGTCATCGCTGGCTTCATACCGTTCGAGCATCTCCCGGAAGCCGAATTCGAGCGAACCATGCTCATCCAGTACCAGCATGGAAATTATTCCGAGGATTTCAATGACGAACAACCCGAGCCACTCTCTTGCTGATTCAATTTTTCCTATCATAATAAGTTACTTGTTATCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCGCTGATTTTTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAGCAGCTTTTCTAGCTGAAAACAACACCAAACTAATATCAATATTGTTTTCTTACCTACCATTATTATAATTTGTAGTCATTTGCTCAATGATGGGCTCTCGATGTTTCCGCAAATGTCCGCAGAAGAACTCGTCGAATTCGAGATGAAACCGCCAGCCCTTGTCAGTATAGTAGAACATTTTCAAAGTGTGCATAAACAGTTTGTAGTAGCTGTGATCGACGATTATTTGCTTATCTCGCTAGAAAAACAAGGGGTTTCGTTGTGAGAGCTTTCGTAAACTAACGCTCTCTCCAACAGACTCGATATAGTCTATCAAATCATCATAATCAGCACCGAAATAGTCGCACGCAGTGGTTAGGAACATTTTCTCT</canonical>
            <polymorphic>GGGTACGATTTCGGACAAGGTGTTTTGGACTTTTTGCGCATTTTTCAATTTTCATAAAACTGCTTTTCAGTCTAAGCATCATCATGCTGAAAACTACATCGAGATGTATAAATACTTCCAACAAAATCTCAGCTTCAAAATTGCTCACGTCATCGCTGGCTTCATACCGTTCGAGCATCTCCCGGAAGCCGAATTCGAGCGAACCATGCTCATCCAGTACCAGCATGGAAATTATTCCGAGGATTTCAATGACGAACAACCCGAGCCACTCTCTTGCTGATTCAATTTTTCCTATCATAATAAGTTACTTGTTATCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCGCTGATTTTTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAAMGCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAGCAGCTTTTCTAGCTGAAAACAACACCAAACTAATATCAATATTGTTTTCTTACCTACCATTATTATAATTTGTAGTCATTTGCTCAATGATGGGCTCTCGATGTTTCCGCAAATGTCCGCAGAAGAACTCGTCGAATTCGAGATGAAACCGCCAGCCCTTGTCAGTATAGTAGAACATTTTCAAAGTGTGCATAAACAGTTTGTAGTAGCTGTGATCGACGATTATTTGCTTATCTCGCTAGAAAAACAAGGGGTTTCGTTGTGAGAGCTTTCGTAAACTAACGCTCTCTCCAACAGACTCGATATAGTCTATCAAATCATCATAATCAGCACCGAAATAGTCGCACGCAGTGGTTAGGAACATTTTCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCTTCTTTTTCATCTCTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>CCAGAAATTGAAGAAATCTCATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCGCTGATTTTTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGG</canonical_amplicon>
		<polymorphic_amplicon>TCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCGCTGATTTTTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAAMGCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20471</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>938190</contig_pos>
        <strand></strand>
        <context>ttattytgga[A/T]ttttttttat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGA</left_flank>
        <right_flank>TTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTCAAATTGCTCGTTTATTTAAGGTTATCTTAGGTTAGAGCATTCACGGTATCTCTACTAATCTCGAATTCCTCTGGGGTACGATTTCGGACAAGGTGTTTTGGACTTTTTGCGCATTTTTCAATTTTCATAAAACTGCTTTTCAGTCTAAGCATCATCATGCTGAAAACTACATCGAGATGTATAAATACTTCCAACAAAATCTCAGCTTCAAAATTGCTCACGTCATCGCTGGCTTCATACCGTTCGAGCATCTCCCGGAAGCCGAATTCGAGCGAACCATGCTCATCCAGTACCAGCATGGAAATTATTCCGAGGATTTCAATGACGAACAACCCGAGCCACTCTCTTGCTGATTCAATTTTTCCTATCATAATAAGTTACTTGTTATCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCGCTGATTTTTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAGCAGCTTTTCTAGCTGAAAACAACACCAAACTAATATCAATATTGTTTTCTTACCTACCATTATTATAATTTGTAGTCATTTGCTCAATGATGGGCTCTCGATGTTTCCGCAAATGTCCGCAGAAGAACTCGTCGAATTCGAGATGAAACCGCCAGCCCTTGTCAGTATAGTAGAACATTTTCAAAGTGTGCATAAACAGTTTGTAGTAGCTGTGATCGACGATTATTTGCTTATCTCGCTAGAAAAACAAGGGGTTTCGTTGTGAGAGCTTTCGTAAACTAACGCTCTCTCCAA</canonical>
            <polymorphic>GCTCAAATTGCTCGTTTATTTAAGGTTATCTTAGGTTAGAGCATTCACGGTATCTCTACTAATCTCGAATTCCTCTGGGGTACGATTTCGGACAAGGTGTTTTGGACTTTTTGCGCATTTTTCAATTTTCATAAAACTGCTTTTCAGTCTAAGCATCATCATGCTGAAAACTACATCGAGATGTATAAATACTTCCAACAAAATCTCAGCTTCAAAATTGCTCACGTCATCGCTGGCTTCATACCGTTCGAGCATCTCCCGGAAGCCGAATTCGAGCGAACCATGCTCATCCAGTACCAGCATGGAAATTATTCCGAGGATTTCAATGACGAACAACCCGAGCCACTCTCTTGCTGATTCAATTTTTCCTATCATAATAAGTTACTTGTTATCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCGCTGATTTTTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAWTTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAGCAGCTTTTCTAGCTGAAAACAACACCAAACTAATATCAATATTGTTTTCTTACCTACCATTATTATAATTTGTAGTCATTTGCTCAATGATGGGCTCTCGATGTTTCCGCAAATGTCCGCAGAAGAACTCGTCGAATTCGAGATGAAACCGCCAGCCCTTGTCAGTATAGTAGAACATTTTCAAAGTGTGCATAAACAGTTTGTAGTAGCTGTGATCGACGATTATTTGCTTATCTCGCTAGAAAAACAAGGGGTTTCGTTGTGAGAGCTTTCGTAAACTAACGCTCTCTCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>324 201 160 160 67 52 18 18</canonical_bands>
                <polymorphic_bands>324 201 160 160 67 52 36</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>160 140 92 70 68 68 62 56 54 53 52 46 38 18 18 5</canonical_bands>
                <polymorphic_bands>160 140 92 70 68 68 62 56 54 53 52 46 38 36 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCTTCTTTTTCATCTCTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>CCAGAAATTGAAGAAATCTCATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCGCTGATTTTTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGG</canonical_amplicon>
		<polymorphic_amplicon>TCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCGCTGATTTTTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAWTTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20476</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>938185</contig_pos>
        <strand></strand>
        <context>tttttttatt[T/C]tggawttttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATT</left_flank>
        <right_flank>TGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAAGCTCAAATTGCTCGTTTATTTAAGGTTATCTTAGGTTAGAGCATTCACGGTATCTCTACTAATCTCGAATTCCTCTGGGGTACGATTTCGGACAAGGTGTTTTGGACTTTTTGCGCATTTTTCAATTTTCATAAAACTGCTTTTCAGTCTAAGCATCATCATGCTGAAAACTACATCGAGATGTATAAATACTTCCAACAAAATCTCAGCTTCAAAATTGCTCACGTCATCGCTGGCTTCATACCGTTCGAGCATCTCCCGGAAGCCGAATTCGAGCGAACCATGCTCATCCAGTACCAGCATGGAAATTATTCCGAGGATTTCAATGACGAACAACCCGAGCCACTCTCTTGCTGATTCAATTTTTCCTATCATAATAAGTTACTTGTTATCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCGCTGATTTTTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAGCAGCTTTTCTAGCTGAAAACAACACCAAACTAATATCAATATTGTTTTCTTACCTACCATTATTATAATTTGTAGTCATTTGCTCAATGATGGGCTCTCGATGTTTCCGCAAATGTCCGCAGAAGAACTCGTCGAATTCGAGATGAAACCGCCAGCCCTTGTCAGTATAGTAGAACATTTTCAAAGTGTGCATAAACAGTTTGTAGTAGCTGTGATCGACGATTATTTGCTTATCTCGCTAGAAAAACAAGGGGTTTCGTTGTGAGAGCTTTCGTAAACTAACGCTCTC</canonical>
            <polymorphic>ATTAAGCTCAAATTGCTCGTTTATTTAAGGTTATCTTAGGTTAGAGCATTCACGGTATCTCTACTAATCTCGAATTCCTCTGGGGTACGATTTCGGACAAGGTGTTTTGGACTTTTTGCGCATTTTTCAATTTTCATAAAACTGCTTTTCAGTCTAAGCATCATCATGCTGAAAACTACATCGAGATGTATAAATACTTCCAACAAAATCTCAGCTTCAAAATTGCTCACGTCATCGCTGGCTTCATACCGTTCGAGCATCTCCCGGAAGCCGAATTCGAGCGAACCATGCTCATCCAGTACCAGCATGGAAATTATTCCGAGGATTTCAATGACGAACAACCCGAGCCACTCTCTTGCTGATTCAATTTTTCCTATCATAATAAGTTACTTGTTATCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCGCTGATTTTTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTYTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAGCAGCTTTTCTAGCTGAAAACAACACCAAACTAATATCAATATTGTTTTCTTACCTACCATTATTATAATTTGTAGTCATTTGCTCAATGATGGGCTCTCGATGTTTCCGCAAATGTCCGCAGAAGAACTCGTCGAATTCGAGATGAAACCGCCAGCCCTTGTCAGTATAGTAGAACATTTTCAAAGTGTGCATAAACAGTTTGTAGTAGCTGTGATCGACGATTATTTGCTTATCTCGCTAGAAAAACAAGGGGTTTCGTTGTGAGAGCTTTCGTAAACTAACGCTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCTTCTTTTTCATCTCTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>CCAGAAATTGAAGAAATCTCATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCGCTGATTTTTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGG</canonical_amplicon>
		<polymorphic_amplicon>TCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCGCTGATTTTTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTYTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20490</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>938051</contig_pos>
        <strand>+</strand>
        <context>TTGCTGAYTC[A/T]ATTTTTCCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTCCGAGGATTTCAATGACGAACAACCCGAGCCACTCTCTTGCTGATTC</left_flank>
        <right_flank>ATTTTTCCTATCATAATAAGTTACTTGTTATCTCTTCTTTTTCATCTCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCCTAGGCAAGATCAATTATCCCGGTTCCTGTGAGAGTTATCAGAAATCCGTCAACTGATAAAATGTTAGTAATATCATGATGAATATTTTATCATCTGAAAATGTTTGATATCTCTCATAGAAACAGAGATAATTAAGCTCAAATTGCTCGTTTATTTAAGGTTATCTTAGGTTAGAGCATTCACGGTATCTCTACTAATCTCGAATTCCTCTGGGGTACGATTTCGGACAAGGTGTTTTGGACTTTTTGCGCATTTTTCAATTTTCATAAAACTGCTTTTCAGTCTAAGCATCATCATGCTGAAAACTACATCGAGATGTATAAATACTTCCAACAAAATCTCAGCTTCAAAATTGCTCACGTCATCGCTGGCTTCATACCGTTCGAGCATCTCCCGGAAGCCGAATTCGAGCGAACCATGCTCATCCAGTACCAGCATGGAAATTATTCCGAGGATTTCAATGACGAACAACCCGAGCCACTCTCTTGCTGATTCAATTTTTCCTATCATAATAAGTTACTTGTTATCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCGCTGATTTTTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAGCAGCTTTTCTAGCTGAAAACAACACCAAACTAATATCAATATTGTTTTCTTACCTACCATTATTATAATTTGTAGTCATTTGCTCAATGATGGGCTCTCGATGTTTCCGCAAATGTCCGCAGAAGAACTCGTCGAATTCGAGATGAAACCGCCAG</canonical>
            <polymorphic>ACCCTAGGCAAGATCAATTATCCCGGTTCCTGTGAGAGTTATCAGAAATCCGTCAACTGATAAAATGTTAGTAATATCATGATGAATATTTTATCATCTGAAAATGTTTGATATCTCTCATAGAAACAGAGATAATTAAGCTCAAATTGCTCGTTTATTTAAGGTTATCTTAGGTTAGAGCATTCACGGTATCTCTACTAATCTCGAATTCCTCTGGGGTACGATTTCGGACAAGGTGTTTTGGACTTTTTGCGCATTTTTCAATTTTCATAAAACTGCTTTTCAGTCTAAGCATCATCATGCTGAAAACTACATCGAGATGTATAAATACTTCCAACAAAATCTCAGCTTCAAAATTGCTCACGTCATCGCTGGCTTCATACCGTTCGAGCATCTCCCGGAAGCCGAATTCGAGCGAACCATGCTCATCCAGTACCAGCATGGAAATTATTCCGAGGATTTCAATGACGAACAACCCGAGCCACTCTCTTGCTGATTCWATTTTTCCTATCATAATAAGTTACTTGTTATCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCGCTGATTTTTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAGCAGCTTTTCTAGCTGAAAACAACACCAAACTAATATCAATATTGTTTTCTTACCTACCATTATTATAATTTGTAGTCATTTGCTCAATGATGGGCTCTCGATGTTTCCGCAAATGTCCGCAGAAGAACTCGTCGAATTCGAGATGAAACCGCCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>140 118 92 70 68 68 62 56 54 53 52 46 38 21 18 18 15 11</canonical_bands>
                <polymorphic_bands>140 122 118 92 70 68 62 56 53 52 46 38 21 18 18 15 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATACTTCCAACAAAATCTCAG</pcr_primer_p1>
		<pcr_primer_p2>CGAGAAATTTCAGTGTGATAAGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAATACTTCCAACAAAATCTCAGCTTCAAAATTGCTCACGTCATCGCTGGCTTCATACCGTTCGAGCATCTCCCGGAAGCCGAATTCGAGCGAACCATGCTCATCCAGTACCAGCATGGAAATTATTCCGAGGATTTCAATGACGAACAACCCGAGCCACTCTCTTGCTGATTCAATTTTTCCTATCATAATAAGTTACTTGTTATCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCG</canonical_amplicon>
		<polymorphic_amplicon>AAATACTTCCAACAAAATCTCAGCTTCAAAATTGCTCACGTCATCGCTGGCTTCATACCGTTCGAGCATCTCCCGGAAGCCGAATTCGAGCGAACCATGCTCATCCAGTACCAGCATGGAAATTATTCCGAGGATTTCAATGACGAACAACCCGAGCCACTCTCTTGCTGATTCWATTTTTCCTATCATAATAAGTTACTTGTTATCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20491</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>938048</contig_pos>
        <strand>+</strand>
        <context>CTCTTGCTGA[C/T]TCWATTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTATTCCGAGGATTTCAATGACGAACAACCCGAGCCACTCTCTTGCTGA</left_flank>
        <right_flank>TCAATTTTTCCTATCATAATAAGTTACTTGTTATCTCTTCTTTTTCATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCACCCTAGGCAAGATCAATTATCCCGGTTCCTGTGAGAGTTATCAGAAATCCGTCAACTGATAAAATGTTAGTAATATCATGATGAATATTTTATCATCTGAAAATGTTTGATATCTCTCATAGAAACAGAGATAATTAAGCTCAAATTGCTCGTTTATTTAAGGTTATCTTAGGTTAGAGCATTCACGGTATCTCTACTAATCTCGAATTCCTCTGGGGTACGATTTCGGACAAGGTGTTTTGGACTTTTTGCGCATTTTTCAATTTTCATAAAACTGCTTTTCAGTCTAAGCATCATCATGCTGAAAACTACATCGAGATGTATAAATACTTCCAACAAAATCTCAGCTTCAAAATTGCTCACGTCATCGCTGGCTTCATACCGTTCGAGCATCTCCCGGAAGCCGAATTCGAGCGAACCATGCTCATCCAGTACCAGCATGGAAATTATTCCGAGGATTTCAATGACGAACAACCCGAGCCACTCTCTTGCTGATTCAATTTTTCCTATCATAATAAGTTACTTGTTATCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCGCTGATTTTTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAGCAGCTTTTCTAGCTGAAAACAACACCAAACTAATATCAATATTGTTTTCTTACCTACCATTATTATAATTTGTAGTCATTTGCTCAATGATGGGCTCTCGATGTTTCCGCAAATGTCCGCAGAAGAACTCGTCGAATTCGAGATGAAACCGC</canonical>
            <polymorphic>GTCACCCTAGGCAAGATCAATTATCCCGGTTCCTGTGAGAGTTATCAGAAATCCGTCAACTGATAAAATGTTAGTAATATCATGATGAATATTTTATCATCTGAAAATGTTTGATATCTCTCATAGAAACAGAGATAATTAAGCTCAAATTGCTCGTTTATTTAAGGTTATCTTAGGTTAGAGCATTCACGGTATCTCTACTAATCTCGAATTCCTCTGGGGTACGATTTCGGACAAGGTGTTTTGGACTTTTTGCGCATTTTTCAATTTTCATAAAACTGCTTTTCAGTCTAAGCATCATCATGCTGAAAACTACATCGAGATGTATAAATACTTCCAACAAAATCTCAGCTTCAAAATTGCTCACGTCATCGCTGGCTTCATACCGTTCGAGCATCTCCCGGAAGCCGAATTCGAGCGAACCATGCTCATCCAGTACCAGCATGGAAATTATTCCGAGGATTTCAATGACGAACAACCCGAGCCACTCTCTTGCTGAYTCAATTTTTCCTATCATAATAAGTTACTTGTTATCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCGCTGATTTTTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAGCAGCTTTTCTAGCTGAAAACAACACCAAACTAATATCAATATTGTTTTCTTACCTACCATTATTATAATTTGTAGTCATTTGCTCAATGATGGGCTCTCGATGTTTCCGCAAATGTCCGCAGAAGAACTCGTCGAATTCGAGATGAAACCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>498 296 206</canonical_bands>
                <polymorphic_bands>704 296</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATACTTCCAACAAAATCTCAG</pcr_primer_p1>
		<pcr_primer_p2>CGAGAAATTTCAGTGTGATAAGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAATACTTCCAACAAAATCTCAGCTTCAAAATTGCTCACGTCATCGCTGGCTTCATACCGTTCGAGCATCTCCCGGAAGCCGAATTCGAGCGAACCATGCTCATCCAGTACCAGCATGGAAATTATTCCGAGGATTTCAATGACGAACAACCCGAGCCACTCTCTTGCTGATTCAATTTTTCCTATCATAATAAGTTACTTGTTATCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCG</canonical_amplicon>
		<polymorphic_amplicon>AAATACTTCCAACAAAATCTCAGCTTCAAAATTGCTCACGTCATCGCTGGCTTCATACCGTTCGAGCATCTCCCGGAAGCCGAATTCGAGCGAACCATGCTCATCCAGTACCAGCATGGAAATTATTCCGAGGATTTCAATGACGAACAACCCGAGCCACTCTCTTGCTGAYTCAATTTTTCCTATCATAATAAGTTACTTGTTATCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20492</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>956743</contig_pos>
        <strand>+</strand>
        <context>ACATTTTTTT[C/T]RAGCWGACAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGATATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTT</left_flank>
        <right_flank>AAGCTGACAATCTTGCTACAGTAACCTATATAAACTTCGACTATGAGACA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACCGGTGGGGGGGGGGGCATGCCACTATCATTTACTAAGCCGCTAAGTTTTTCATTAAGACCCCGGTGAAAAATTGTACGGAAAGTGTGTTCTAGAACTTACCAAGTTCAGCAAAGTCGATGTTTCAATGGTTGTGAGAAGCAGGAGTTGATTCATTGGGGATGTGGTGTCTTTCAGGAATTCAATCTGAAATTTTACATTTTCAAAGTGTGTTTTTCGAAAAACATCCATAATAGATATATTTGTGCAACACTCGAAACATCATGTTTTTGCTCAATCAGAACTAAGAACTGTTGTTGTTTTTTTTCTTGAAAACTGGAAAGGTGAACACTGTCAATAGAAAAGTATGAAAATACCAATATAGGTCGAAAGAGGATAATTTTATCATTAAGCTCCGCCCAAAATCAACATCTTGGCACTTGATCAATGACCCATTTATTGGGTTTTGTGATATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTTCAAGCTGACAATCTTGCTACAGTAACCTATATAAACTTCGACTATGAGACAATAAGAATTGACAAATCCAACTTCCTATTTGTAATTTAAATCATTTTTGAAAAAAAAAATTCTACAGTAATTCCTAATACTCTGGAAAAAATCGAAGTTCAAAGTCTGGACTTCCTTGATCAATTTTAGAAATGTAGTTTTTTTCAGAGTTTGCTAGTTTATAAAAAGTTGAAAATAAACTATTTGGATAAGATGTTTTAATTTGAATTAGTTGCGGTCTCGAATTCCCAGAATTTTTATTTAATTGGTTACCGTATATTCTTTCAAAGAAGCGAACTCAATACGCGCACTTTGAGCTCAATTATCTCGGCTCGTCTAGAAGATATCGAAATGTGTTCTACTAATAAATTTTCAATTATGATAATAAAATTATTGTGTCAGTTGACACATTTTCAATATCTTTCAAAGGTACCGAGATAATTGAGCTCAAAGTGCACATTAGGGTTGGCT</canonical>
            <polymorphic>TCACCGGTGGGGGGGGGGGCATGCCACTATCATTTACTAAGCCGCTAAGTTTTTCATTAAGACCCCGGTGAAAAATTGTACGGAAAGTGTGTTCTAGAACTTACCAAGTTCAGCAAAGTCGATGTTTCAATGGTTGTGAGAAGCAGGAGTTGATTCATTGGGGATGTGGTGTCTTTCAGGAATTCAATCTGAAATTTTACATTTTCAAAGTGTGTTTTTCGAAAAACATCCATAATAGATATATTTGTGCAACACTCGAAACATCATGTTTTTGCTCAATCAGAACTAAGAACTGTTGTTGTTTTTTTTCTTGAAAACTGGAAAGGTGAACACTGTCAATAGAAAAGTATGAAAATACCAATATAGGTCGAAAGAGGATAATTTTATCATTAAGCTCCGCCCAAAATCAACATCTTGGCACTTGATCAATGACCCATTTATTGGGTTTTGTGATATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTTYAAGCTGACAATCTTGCTACAGTAACCTATATAAACTTCGACTATGAGACAATAAGAATTGACAAATCCAACTTCCTATTTGTAATTTAAATCATTTTTGAAAAAAAAAATTCTACAGTAATTCCTAATACTCTGGAAAAAATCGAAGTTCAAAGTCTGGACTTCCTTGATCAATTTTAGAAATGTAGTTTTTTTCAGAGTTTGCTAGTTTATAAAAAGTTGAAAATAAACTATTTGGATAAGATGTTTTAATTTGAATTAGTTGCGGTCTCGAATTCCCAGAATTTTTATTTAATTGGTTACCGTATATTCTTTCAAAGAAGCGAACTCAATACGCGCACTTTGAGCTCAATTATCTCGGCTCGTCTAGAAGATATCGAAATGTGTTCTACTAATAAATTTTCAATTATGATAATAAAATTATTGTGTCAGTTGACACATTTTCAATATCTTTCAAAGGTACCGAGATAATTGAGCTCAAAGTGCACATTAGGGTTGGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGAACACTGTCAATAGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>GAAGTTGGATTTGTCAATTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTGAACACTGTCAATAGAAAAGTATGAAAATACCAATATAGGTCGAAAGAGGATAATTTTATCATTAAGCTCCGCCCAAAATCAACATCTTGGCACTTGATCAATGACCCATTTATTGGGTTTTGTGATATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTTCAAGCTGACAATCTTGCTACAGTAACCTATATAAACTTCGACTATGAGACAATAAGAATTGACAAATCCAACTTC</canonical_amplicon>
		<polymorphic_amplicon>GGTGAACACTGTCAATAGAAAAGTATGAAAATACCAATATAGGTCGAAAGAGGATAATTTTATCATTAAGCTCCGCCCAAAATCAACATCTTGGCACTTGATCAATGACCCATTTATTGGGTTTTGTGATATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTTYAAGCTGACAATCTTGCTACAGTAACCTATATAAACTTCGACTATGAGACAATAAGAATTGACAAATCCAACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20493</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>956744</contig_pos>
        <strand>+</strand>
        <context>CATTTTTTTY[A/G]AGCWGACAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTTC</left_flank>
        <right_flank>AGCTGACAATCTTGCTACAGTAACCTATATAAACTTCGACTATGAGACAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACCGGTGGGGGGGGGGGCATGCCACTATCATTTACTAAGCCGCTAAGTTTTTCATTAAGACCCCGGTGAAAAATTGTACGGAAAGTGTGTTCTAGAACTTACCAAGTTCAGCAAAGTCGATGTTTCAATGGTTGTGAGAAGCAGGAGTTGATTCATTGGGGATGTGGTGTCTTTCAGGAATTCAATCTGAAATTTTACATTTTCAAAGTGTGTTTTTCGAAAAACATCCATAATAGATATATTTGTGCAACACTCGAAACATCATGTTTTTGCTCAATCAGAACTAAGAACTGTTGTTGTTTTTTTTCTTGAAAACTGGAAAGGTGAACACTGTCAATAGAAAAGTATGAAAATACCAATATAGGTCGAAAGAGGATAATTTTATCATTAAGCTCCGCCCAAAATCAACATCTTGGCACTTGATCAATGACCCATTTATTGGGTTTTGTGATATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTTCAAGCTGACAATCTTGCTACAGTAACCTATATAAACTTCGACTATGAGACAATAAGAATTGACAAATCCAACTTCCTATTTGTAATTTAAATCATTTTTGAAAAAAAAAATTCTACAGTAATTCCTAATACTCTGGAAAAAATCGAAGTTCAAAGTCTGGACTTCCTTGATCAATTTTAGAAATGTAGTTTTTTTCAGAGTTTGCTAGTTTATAAAAAGTTGAAAATAAACTATTTGGATAAGATGTTTTAATTTGAATTAGTTGCGGTCTCGAATTCCCAGAATTTTTATTTAATTGGTTACCGTATATTCTTTCAAAGAAGCGAACTCAATACGCGCACTTTGAGCTCAATTATCTCGGCTCGTCTAGAAGATATCGAAATGTGTTCTACTAATAAATTTTCAATTATGATAATAAAATTATTGTGTCAGTTGACACATTTTCAATATCTTTCAAAGGTACCGAGATAATTGAGCTCAAAGTGCACATTAGGGTTGGCTA</canonical>
            <polymorphic>CACCGGTGGGGGGGGGGGCATGCCACTATCATTTACTAAGCCGCTAAGTTTTTCATTAAGACCCCGGTGAAAAATTGTACGGAAAGTGTGTTCTAGAACTTACCAAGTTCAGCAAAGTCGATGTTTCAATGGTTGTGAGAAGCAGGAGTTGATTCATTGGGGATGTGGTGTCTTTCAGGAATTCAATCTGAAATTTTACATTTTCAAAGTGTGTTTTTCGAAAAACATCCATAATAGATATATTTGTGCAACACTCGAAACATCATGTTTTTGCTCAATCAGAACTAAGAACTGTTGTTGTTTTTTTTCTTGAAAACTGGAAAGGTGAACACTGTCAATAGAAAAGTATGAAAATACCAATATAGGTCGAAAGAGGATAATTTTATCATTAAGCTCCGCCCAAAATCAACATCTTGGCACTTGATCAATGACCCATTTATTGGGTTTTGTGATATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTTCRAGCTGACAATCTTGCTACAGTAACCTATATAAACTTCGACTATGAGACAATAAGAATTGACAAATCCAACTTCCTATTTGTAATTTAAATCATTTTTGAAAAAAAAAATTCTACAGTAATTCCTAATACTCTGGAAAAAATCGAAGTTCAAAGTCTGGACTTCCTTGATCAATTTTAGAAATGTAGTTTTTTTCAGAGTTTGCTAGTTTATAAAAAGTTGAAAATAAACTATTTGGATAAGATGTTTTAATTTGAATTAGTTGCGGTCTCGAATTCCCAGAATTTTTATTTAATTGGTTACCGTATATTCTTTCAAAGAAGCGAACTCAATACGCGCACTTTGAGCTCAATTATCTCGGCTCGTCTAGAAGATATCGAAATGTGTTCTACTAATAAATTTTCAATTATGATAATAAAATTATTGTGTCAGTTGACACATTTTCAATATCTTTCAAAGGTACCGAGATAATTGAGCTCAAAGTGCACATTAGGGTTGGCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGAACACTGTCAATAGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>GAAGTTGGATTTGTCAATTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTGAACACTGTCAATAGAAAAGTATGAAAATACCAATATAGGTCGAAAGAGGATAATTTTATCATTAAGCTCCGCCCAAAATCAACATCTTGGCACTTGATCAATGACCCATTTATTGGGTTTTGTGATATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTTCAAGCTGACAATCTTGCTACAGTAACCTATATAAACTTCGACTATGAGACAATAAGAATTGACAAATCCAACTTC</canonical_amplicon>
		<polymorphic_amplicon>GGTGAACACTGTCAATAGAAAAGTATGAAAATACCAATATAGGTCGAAAGAGGATAATTTTATCATTAAGCTCCGCCCAAAATCAACATCTTGGCACTTGATCAATGACCCATTTATTGGGTTTTGTGATATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTTCRAGCTGACAATCTTGCTACAGTAACCTATATAAACTTCGACTATGAGACAATAAGAATTGACAAATCCAACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20494</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>956748</contig_pos>
        <strand>+</strand>
        <context>TTTTTYRAGC[A/T]GACAATCTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTTCAAGC</left_flank>
        <right_flank>GACAATCTTGCTACAGTAACCTATATAAACTTCGACTATGAGACAATAAG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTGGGGGGGGGGGCATGCCACTATCATTTACTAAGCCGCTAAGTTTTTCATTAAGACCCCGGTGAAAAATTGTACGGAAAGTGTGTTCTAGAACTTACCAAGTTCAGCAAAGTCGATGTTTCAATGGTTGTGAGAAGCAGGAGTTGATTCATTGGGGATGTGGTGTCTTTCAGGAATTCAATCTGAAATTTTACATTTTCAAAGTGTGTTTTTCGAAAAACATCCATAATAGATATATTTGTGCAACACTCGAAACATCATGTTTTTGCTCAATCAGAACTAAGAACTGTTGTTGTTTTTTTTCTTGAAAACTGGAAAGGTGAACACTGTCAATAGAAAAGTATGAAAATACCAATATAGGTCGAAAGAGGATAATTTTATCATTAAGCTCCGCCCAAAATCAACATCTTGGCACTTGATCAATGACCCATTTATTGGGTTTTGTGATATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTTCAAGCTGACAATCTTGCTACAGTAACCTATATAAACTTCGACTATGAGACAATAAGAATTGACAAATCCAACTTCCTATTTGTAATTTAAATCATTTTTGAAAAAAAAAATTCTACAGTAATTCCTAATACTCTGGAAAAAATCGAAGTTCAAAGTCTGGACTTCCTTGATCAATTTTAGAAATGTAGTTTTTTTCAGAGTTTGCTAGTTTATAAAAAGTTGAAAATAAACTATTTGGATAAGATGTTTTAATTTGAATTAGTTGCGGTCTCGAATTCCCAGAATTTTTATTTAATTGGTTACCGTATATTCTTTCAAAGAAGCGAACTCAATACGCGCACTTTGAGCTCAATTATCTCGGCTCGTCTAGAAGATATCGAAATGTGTTCTACTAATAAATTTTCAATTATGATAATAAAATTATTGTGTCAGTTGACACATTTTCAATATCTTTCAAAGGTACCGAGATAATTGAGCTCAAAGTGCACATTAGGGTTGGCTACTAC</canonical>
            <polymorphic>GGTGGGGGGGGGGGCATGCCACTATCATTTACTAAGCCGCTAAGTTTTTCATTAAGACCCCGGTGAAAAATTGTACGGAAAGTGTGTTCTAGAACTTACCAAGTTCAGCAAAGTCGATGTTTCAATGGTTGTGAGAAGCAGGAGTTGATTCATTGGGGATGTGGTGTCTTTCAGGAATTCAATCTGAAATTTTACATTTTCAAAGTGTGTTTTTCGAAAAACATCCATAATAGATATATTTGTGCAACACTCGAAACATCATGTTTTTGCTCAATCAGAACTAAGAACTGTTGTTGTTTTTTTTCTTGAAAACTGGAAAGGTGAACACTGTCAATAGAAAAGTATGAAAATACCAATATAGGTCGAAAGAGGATAATTTTATCATTAAGCTCCGCCCAAAATCAACATCTTGGCACTTGATCAATGACCCATTTATTGGGTTTTGTGATATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTTCAAGCWGACAATCTTGCTACAGTAACCTATATAAACTTCGACTATGAGACAATAAGAATTGACAAATCCAACTTCCTATTTGTAATTTAAATCATTTTTGAAAAAAAAAATTCTACAGTAATTCCTAATACTCTGGAAAAAATCGAAGTTCAAAGTCTGGACTTCCTTGATCAATTTTAGAAATGTAGTTTTTTTCAGAGTTTGCTAGTTTATAAAAAGTTGAAAATAAACTATTTGGATAAGATGTTTTAATTTGAATTAGTTGCGGTCTCGAATTCCCAGAATTTTTATTTAATTGGTTACCGTATATTCTTTCAAAGAAGCGAACTCAATACGCGCACTTTGAGCTCAATTATCTCGGCTCGTCTAGAAGATATCGAAATGTGTTCTACTAATAAATTTTCAATTATGATAATAAAATTATTGTGTCAGTTGACACATTTTCAATATCTTTCAAAGGTACCGAGATAATTGAGCTCAAAGTGCACATTAGGGTTGGCTACTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>389 343 129 109 30</canonical_bands>
                <polymorphic_bands>452 389 129 30</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>353 343 115 109 36 23 14 7</canonical_bands>
                <polymorphic_bands>452 353 115 36 23 14 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGAACACTGTCAATAGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>GAAGTTGGATTTGTCAATTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTGAACACTGTCAATAGAAAAGTATGAAAATACCAATATAGGTCGAAAGAGGATAATTTTATCATTAAGCTCCGCCCAAAATCAACATCTTGGCACTTGATCAATGACCCATTTATTGGGTTTTGTGATATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTTCAAGCTGACAATCTTGCTACAGTAACCTATATAAACTTCGACTATGAGACAATAAGAATTGACAAATCCAACTTC</canonical_amplicon>
		<polymorphic_amplicon>GGTGAACACTGTCAATAGAAAAGTATGAAAATACCAATATAGGTCGAAAGAGGATAATTTTATCATTAAGCTCCGCCCAAAATCAACATCTTGGCACTTGATCAATGACCCATTTATTGGGTTTTGTGATATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTTCAAGCWGACAATCTTGCTACAGTAACCTATATAAACTTCGACTATGAGACAATAAGAATTGACAAATCCAACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20495</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>956772</contig_pos>
        <strand>+</strand>
        <context>CAGTAACCTA[A/T]ATAAACTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTAATATACAAACATTTTTTTCAAGCTGACAATCTTGCTACAGTAACCTA</left_flank>
        <right_flank>ATAAACTTCGACTATGAGACAATAAGAATTGACAAATCCAACTTCCTATT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATTTACTAAGCCGCTAAGTTTTTCATTAAGACCCCGGTGAAAAATTGTACGGAAAGTGTGTTCTAGAACTTACCAAGTTCAGCAAAGTCGATGTTTCAATGGTTGTGAGAAGCAGGAGTTGATTCATTGGGGATGTGGTGTCTTTCAGGAATTCAATCTGAAATTTTACATTTTCAAAGTGTGTTTTTCGAAAAACATCCATAATAGATATATTTGTGCAACACTCGAAACATCATGTTTTTGCTCAATCAGAACTAAGAACTGTTGTTGTTTTTTTTCTTGAAAACTGGAAAGGTGAACACTGTCAATAGAAAAGTATGAAAATACCAATATAGGTCGAAAGAGGATAATTTTATCATTAAGCTCCGCCCAAAATCAACATCTTGGCACTTGATCAATGACCCATTTATTGGGTTTTGTGATATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTTCAAGCTGACAATCTTGCTACAGTAACCTATATAAACTTCGACTATGAGACAATAAGAATTGACAAATCCAACTTCCTATTTGTAATTTAAATCATTTTTGAAAAAAAAAATTCTACAGTAATTCCTAATACTCTGGAAAAAATCGAAGTTCAAAGTCTGGACTTCCTTGATCAATTTTAGAAATGTAGTTTTTTTCAGAGTTTGCTAGTTTATAAAAAGTTGAAAATAAACTATTTGGATAAGATGTTTTAATTTGAATTAGTTGCGGTCTCGAATTCCCAGAATTTTTATTTAATTGGTTACCGTATATTCTTTCAAAGAAGCGAACTCAATACGCGCACTTTGAGCTCAATTATCTCGGCTCGTCTAGAAGATATCGAAATGTGTTCTACTAATAAATTTTCAATTATGATAATAAAATTATTGTGTCAGTTGACACATTTTCAATATCTTTCAAAGGTACCGAGATAATTGAGCTCAAAGTGCACATTAGGGTTGGCTACTACTAAAGCAAATACGGTAGACTGGGG</canonical>
            <polymorphic>TCATTTACTAAGCCGCTAAGTTTTTCATTAAGACCCCGGTGAAAAATTGTACGGAAAGTGTGTTCTAGAACTTACCAAGTTCAGCAAAGTCGATGTTTCAATGGTTGTGAGAAGCAGGAGTTGATTCATTGGGGATGTGGTGTCTTTCAGGAATTCAATCTGAAATTTTACATTTTCAAAGTGTGTTTTTCGAAAAACATCCATAATAGATATATTTGTGCAACACTCGAAACATCATGTTTTTGCTCAATCAGAACTAAGAACTGTTGTTGTTTTTTTTCTTGAAAACTGGAAAGGTGAACACTGTCAATAGAAAAGTATGAAAATACCAATATAGGTCGAAAGAGGATAATTTTATCATTAAGCTCCGCCCAAAATCAACATCTTGGCACTTGATCAATGACCCATTTATTGGGTTTTGTGATATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTTCAAGCTGACAATCTTGCTACAGTAACCTAWATAAACTTCGACTATGAGACAATAAGAATTGACAAATCCAACTTCCTATTTGTAATTTAAATCATTTTTGAAAAAAAAAATTCTACAGTAATTCCTAATACTCTGGAAAAAATCGAAGTTCAAAGTCTGGACTTCCTTGATCAATTTTAGAAATGTAGTTTTTTTCAGAGTTTGCTAGTTTATAAAAAGTTGAAAATAAACTATTTGGATAAGATGTTTTAATTTGAATTAGTTGCGGTCTCGAATTCCCAGAATTTTTATTTAATTGGTTACCGTATATTCTTTCAAAGAAGCGAACTCAATACGCGCACTTTGAGCTCAATTATCTCGGCTCGTCTAGAAGATATCGAAATGTGTTCTACTAATAAATTTTCAATTATGATAATAAAATTATTGTGTCAGTTGACACATTTTCAATATCTTTCAAAGGTACCGAGATAATTGAGCTCAAAGTGCACATTAGGGTTGGCTACTACTAAAGCAAATACGGTAGACTGGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGGGTTTTGTGATATAGTTTG</pcr_primer_p1>
		<pcr_primer_p2>TTCTAAAATTGATCAAGGAAGTC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ATTGGGTTTTGTGATATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTTCAAGCTGACAATCTTGCTACAGTAACCTATATAAACTTCGACTATGAGACAATAAGAATTGACAAATCCAACTTCCTATTTGTAATTTAAATCATTTTTGAAAAAAAAAATTCTACAGTAATTCCTAATACTCTGGAAAAAATCGAAGTTCAAAGTCTGGACTTCCTTGATCAATTTTAGAA</canonical_amplicon>
		<polymorphic_amplicon>ATTGGGTTTTGTGATATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTTCAAGCTGACAATCTTGCTACAGTAACCTAWATAAACTTCGACTATGAGACAATAAGAATTGACAAATCCAACTTCCTATTTGTAATTTAAATCATTTTTGAAAAAAAAAATTCTACAGTAATTCCTAATACTCTGGAAAAAATCGAAGTTCAAAGTCTGGACTTCCTTGATCAATTTTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20496</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>956865</contig_pos>
        <strand></strand>
        <context>CTACAGTAAT[T/C]CCTAAYACTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCCTATTTGTAATTTAAATCATTTTTGAAAAAAAAAATTCTACAGTAAT</left_flank>
        <right_flank>CCTAATACTCTGGAAAAAATCGAAGTTCAAAGTCTGGACTTCCTTGATCA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTTCAATGGTTGTGAGAAGCAGGAGTTGATTCATTGGGGATGTGGTGTCTTTCAGGAATTCAATCTGAAATTTTACATTTTCAAAGTGTGTTTTTCGAAAAACATCCATAATAGATATATTTGTGCAACACTCGAAACATCATGTTTTTGCTCAATCAGAACTAAGAACTGTTGTTGTTTTTTTTCTTGAAAACTGGAAAGGTGAACACTGTCAATAGAAAAGTATGAAAATACCAATATAGGTCGAAAGAGGATAATTTTATCATTAAGCTCCGCCCAAAATCAACATCTTGGCACTTGATCAATGACCCATTTATTGGGTTTTGTGATATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTTCAAGCTGACAATCTTGCTACAGTAACCTATATAAACTTCGACTATGAGACAATAAGAATTGACAAATCCAACTTCCTATTTGTAATTTAAATCATTTTTGAAAAAAAAAATTCTACAGTAATTCCTAATACTCTGGAAAAAATCGAAGTTCAAAGTCTGGACTTCCTTGATCAATTTTAGAAATGTAGTTTTTTTCAGAGTTTGCTAGTTTATAAAAAGTTGAAAATAAACTATTTGGATAAGATGTTTTAATTTGAATTAGTTGCGGTCTCGAATTCCCAGAATTTTTATTTAATTGGTTACCGTATATTCTTTCAAAGAAGCGAACTCAATACGCGCACTTTGAGCTCAATTATCTCGGCTCGTCTAGAAGATATCGAAATGTGTTCTACTAATAAATTTTCAATTATGATAATAAAATTATTGTGTCAGTTGACACATTTTCAATATCTTTCAAAGGTACCGAGATAATTGAGCTCAAAGTGCACATTAGGGTTGGCTACTACTAAAGCAAATACGGTAGACTGGGGTTTTGAAATTCCAAAAATCTTTCCGAGAGCTTACAAACCCCAACATTTCAAAAATTGATATTATTCCCAGATCCCATAGCCCATAAATCCTAA</canonical>
            <polymorphic>TGTTTCAATGGTTGTGAGAAGCAGGAGTTGATTCATTGGGGATGTGGTGTCTTTCAGGAATTCAATCTGAAATTTTACATTTTCAAAGTGTGTTTTTCGAAAAACATCCATAATAGATATATTTGTGCAACACTCGAAACATCATGTTTTTGCTCAATCAGAACTAAGAACTGTTGTTGTTTTTTTTCTTGAAAACTGGAAAGGTGAACACTGTCAATAGAAAAGTATGAAAATACCAATATAGGTCGAAAGAGGATAATTTTATCATTAAGCTCCGCCCAAAATCAACATCTTGGCACTTGATCAATGACCCATTTATTGGGTTTTGTGATATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTTCAAGCTGACAATCTTGCTACAGTAACCTATATAAACTTCGACTATGAGACAATAAGAATTGACAAATCCAACTTCCTATTTGTAATTTAAATCATTTTTGAAAAAAAAAATTCTACAGTAATYCCTAATACTCTGGAAAAAATCGAAGTTCAAAGTCTGGACTTCCTTGATCAATTTTAGAAATGTAGTTTTTTTCAGAGTTTGCTAGTTTATAAAAAGTTGAAAATAAACTATTTGGATAAGATGTTTTAATTTGAATTAGTTGCGGTCTCGAATTCCCAGAATTTTTATTTAATTGGTTACCGTATATTCTTTCAAAGAAGCGAACTCAATACGCGCACTTTGAGCTCAATTATCTCGGCTCGTCTAGAAGATATCGAAATGTGTTCTACTAATAAATTTTCAATTATGATAATAAAATTATTGTGTCAGTTGACACATTTTCAATATCTTTCAAAGGTACCGAGATAATTGAGCTCAAAGTGCACATTAGGGTTGGCTACTACTAAAGCAAATACGGTAGACTGGGGTTTTGAAATTCCAAAAATCTTTCCGAGAGCTTACAAACCCCAACATTTCAAAAATTGATATTATTCCCAGATCCCATAGCCCATAAATCCTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>187 176 78 67 58 57 53 51 47 46 41 27 25 17 14 12 11 11 9 7 6</canonical_bands>
                <polymorphic_bands>187 176 78 67 64 58 57 51 47 46 41 27 25 17 14 12 11 9 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGACAAATCCAACTTCCTAT</pcr_primer_p1>
		<pcr_primer_p2>CGGTAACCAATTAAATAAAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTGACAAATCCAACTTCCTATTTGTAATTTAAATCATTTTTGAAAAAAAAAATTCTACAGTAATTCCTAATACTCTGGAAAAAATCGAAGTTCAAAGTCTGGACTTCCTTGATCAATTTTAGAAATGTAGTTTTTTTCAGAGTTTGCTAGTTTATAAAAAGTTGAAAATAAACTATTTGGATAAGATGTTTTAATTTGAATTAGTTGCGGTCTCGAATTCCCAGAATTTTTATTTAATTGGTTACCG</canonical_amplicon>
		<polymorphic_amplicon>AATTGACAAATCCAACTTCCTATTTGTAATTTAAATCATTTTTGAAAAAAAAAATTCTACAGTAATYCCTAATACTCTGGAAAAAATCGAAGTTCAAAGTCTGGACTTCCTTGATCAATTTTAGAAATGTAGTTTTTTTCAGAGTTTGCTAGTTTATAAAAAGTTGAAAATAAACTATTTGGATAAGATGTTTTAATTTGAATTAGTTGCGGTCTCGAATTCCCAGAATTTTTATTTAATTGGTTACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20497</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>956871</contig_pos>
        <strand></strand>
        <context>TAATYCCTAA[T/C]ACTCTGGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTGTAATTTAAATCATTTTTGAAAAAAAAAATTCTACAGTAATTCCTAA</left_flank>
        <right_flank>ACTCTGGAAAAAATCGAAGTTCAAAGTCTGGACTTCCTTGATCAATTTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGGTTGTGAGAAGCAGGAGTTGATTCATTGGGGATGTGGTGTCTTTCAGGAATTCAATCTGAAATTTTACATTTTCAAAGTGTGTTTTTCGAAAAACATCCATAATAGATATATTTGTGCAACACTCGAAACATCATGTTTTTGCTCAATCAGAACTAAGAACTGTTGTTGTTTTTTTTCTTGAAAACTGGAAAGGTGAACACTGTCAATAGAAAAGTATGAAAATACCAATATAGGTCGAAAGAGGATAATTTTATCATTAAGCTCCGCCCAAAATCAACATCTTGGCACTTGATCAATGACCCATTTATTGGGTTTTGTGATATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTTCAAGCTGACAATCTTGCTACAGTAACCTATATAAACTTCGACTATGAGACAATAAGAATTGACAAATCCAACTTCCTATTTGTAATTTAAATCATTTTTGAAAAAAAAAATTCTACAGTAATTCCTAATACTCTGGAAAAAATCGAAGTTCAAAGTCTGGACTTCCTTGATCAATTTTAGAAATGTAGTTTTTTTCAGAGTTTGCTAGTTTATAAAAAGTTGAAAATAAACTATTTGGATAAGATGTTTTAATTTGAATTAGTTGCGGTCTCGAATTCCCAGAATTTTTATTTAATTGGTTACCGTATATTCTTTCAAAGAAGCGAACTCAATACGCGCACTTTGAGCTCAATTATCTCGGCTCGTCTAGAAGATATCGAAATGTGTTCTACTAATAAATTTTCAATTATGATAATAAAATTATTGTGTCAGTTGACACATTTTCAATATCTTTCAAAGGTACCGAGATAATTGAGCTCAAAGTGCACATTAGGGTTGGCTACTACTAAAGCAAATACGGTAGACTGGGGTTTTGAAATTCCAAAAATCTTTCCGAGAGCTTACAAACCCCAACATTTCAAAAATTGATATTATTCCCAGATCCCATAGCCCATAAATCCTAACTCACA</canonical>
            <polymorphic>AATGGTTGTGAGAAGCAGGAGTTGATTCATTGGGGATGTGGTGTCTTTCAGGAATTCAATCTGAAATTTTACATTTTCAAAGTGTGTTTTTCGAAAAACATCCATAATAGATATATTTGTGCAACACTCGAAACATCATGTTTTTGCTCAATCAGAACTAAGAACTGTTGTTGTTTTTTTTCTTGAAAACTGGAAAGGTGAACACTGTCAATAGAAAAGTATGAAAATACCAATATAGGTCGAAAGAGGATAATTTTATCATTAAGCTCCGCCCAAAATCAACATCTTGGCACTTGATCAATGACCCATTTATTGGGTTTTGTGATATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTTCAAGCTGACAATCTTGCTACAGTAACCTATATAAACTTCGACTATGAGACAATAAGAATTGACAAATCCAACTTCCTATTTGTAATTTAAATCATTTTTGAAAAAAAAAATTCTACAGTAATTCCTAAYACTCTGGAAAAAATCGAAGTTCAAAGTCTGGACTTCCTTGATCAATTTTAGAAATGTAGTTTTTTTCAGAGTTTGCTAGTTTATAAAAAGTTGAAAATAAACTATTTGGATAAGATGTTTTAATTTGAATTAGTTGCGGTCTCGAATTCCCAGAATTTTTATTTAATTGGTTACCGTATATTCTTTCAAAGAAGCGAACTCAATACGCGCACTTTGAGCTCAATTATCTCGGCTCGTCTAGAAGATATCGAAATGTGTTCTACTAATAAATTTTCAATTATGATAATAAAATTATTGTGTCAGTTGACACATTTTCAATATCTTTCAAAGGTACCGAGATAATTGAGCTCAAAGTGCACATTAGGGTTGGCTACTACTAAAGCAAATACGGTAGACTGGGGTTTTGAAATTCCAAAAATCTTTCCGAGAGCTTACAAACCCCAACATTTCAAAAATTGATATTATTCCCAGATCCCATAGCCCATAAATCCTAACTCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGACAAATCCAACTTCCTAT</pcr_primer_p1>
		<pcr_primer_p2>CGGTAACCAATTAAATAAAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTGACAAATCCAACTTCCTATTTGTAATTTAAATCATTTTTGAAAAAAAAAATTCTACAGTAATTCCTAATACTCTGGAAAAAATCGAAGTTCAAAGTCTGGACTTCCTTGATCAATTTTAGAAATGTAGTTTTTTTCAGAGTTTGCTAGTTTATAAAAAGTTGAAAATAAACTATTTGGATAAGATGTTTTAATTTGAATTAGTTGCGGTCTCGAATTCCCAGAATTTTTATTTAATTGGTTACCG</canonical_amplicon>
		<polymorphic_amplicon>AATTGACAAATCCAACTTCCTATTTGTAATTTAAATCATTTTTGAAAAAAAAAATTCTACAGTAATTCCTAAYACTCTGGAAAAAATCGAAGTTCAAAGTCTGGACTTCCTTGATCAATTTTAGAAATGTAGTTTTTTTCAGAGTTTGCTAGTTTATAAAAAGTTGAAAATAAACTATTTGGATAAGATGTTTTAATTTGAATTAGTTGCGGTCTCGAATTCCCAGAATTTTTATTTAATTGGTTACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20498</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>956953</contig_pos>
        <strand>+</strand>
        <context>TTTGCTAGTT[A/T]ATAAAAAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTTCCTTGATCAATTTTAGAAATGTAGTTTTTTTCAGAGTTTGCTAGTT</left_flank>
        <right_flank>ATAAAAAGTTGAAAATAAACTATTTGGATAAGATGTTTTAATTTGAATTA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGTTTTTCGAAAAACATCCATAATAGATATATTTGTGCAACACTCGAAACATCATGTTTTTGCTCAATCAGAACTAAGAACTGTTGTTGTTTTTTTTCTTGAAAACTGGAAAGGTGAACACTGTCAATAGAAAAGTATGAAAATACCAATATAGGTCGAAAGAGGATAATTTTATCATTAAGCTCCGCCCAAAATCAACATCTTGGCACTTGATCAATGACCCATTTATTGGGTTTTGTGATATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTTCAAGCTGACAATCTTGCTACAGTAACCTATATAAACTTCGACTATGAGACAATAAGAATTGACAAATCCAACTTCCTATTTGTAATTTAAATCATTTTTGAAAAAAAAAATTCTACAGTAATTCCTAATACTCTGGAAAAAATCGAAGTTCAAAGTCTGGACTTCCTTGATCAATTTTAGAAATGTAGTTTTTTTCAGAGTTTGCTAGTTTATAAAAAGTTGAAAATAAACTATTTGGATAAGATGTTTTAATTTGAATTAGTTGCGGTCTCGAATTCCCAGAATTTTTATTTAATTGGTTACCGTATATTCTTTCAAAGAAGCGAACTCAATACGCGCACTTTGAGCTCAATTATCTCGGCTCGTCTAGAAGATATCGAAATGTGTTCTACTAATAAATTTTCAATTATGATAATAAAATTATTGTGTCAGTTGACACATTTTCAATATCTTTCAAAGGTACCGAGATAATTGAGCTCAAAGTGCACATTAGGGTTGGCTACTACTAAAGCAAATACGGTAGACTGGGGTTTTGAAATTCCAAAAATCTTTCCGAGAGCTTACAAACCCCAACATTTCAAAAATTGATATTATTCCCAGATCCCATAGCCCATAAATCCTAACTCACATTCAAATGATTTCCTTCCTCAATAAACTCATCGAGCGCTGACAAAGATGTTCCTGGATTTGGATTGGTGAAATCGGACATTC</canonical>
            <polymorphic>TGTGTTTTTCGAAAAACATCCATAATAGATATATTTGTGCAACACTCGAAACATCATGTTTTTGCTCAATCAGAACTAAGAACTGTTGTTGTTTTTTTTCTTGAAAACTGGAAAGGTGAACACTGTCAATAGAAAAGTATGAAAATACCAATATAGGTCGAAAGAGGATAATTTTATCATTAAGCTCCGCCCAAAATCAACATCTTGGCACTTGATCAATGACCCATTTATTGGGTTTTGTGATATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTTCAAGCTGACAATCTTGCTACAGTAACCTATATAAACTTCGACTATGAGACAATAAGAATTGACAAATCCAACTTCCTATTTGTAATTTAAATCATTTTTGAAAAAAAAAATTCTACAGTAATTCCTAATACTCTGGAAAAAATCGAAGTTCAAAGTCTGGACTTCCTTGATCAATTTTAGAAATGTAGTTTTTTTCAGAGTTTGCTAGTTWATAAAAAGTTGAAAATAAACTATTTGGATAAGATGTTTTAATTTGAATTAGTTGCGGTCTCGAATTCCCAGAATTTTTATTTAATTGGTTACCGTATATTCTTTCAAAGAAGCGAACTCAATACGCGCACTTTGAGCTCAATTATCTCGGCTCGTCTAGAAGATATCGAAATGTGTTCTACTAATAAATTTTCAATTATGATAATAAAATTATTGTGTCAGTTGACACATTTTCAATATCTTTCAAAGGTACCGAGATAATTGAGCTCAAAGTGCACATTAGGGTTGGCTACTACTAAAGCAAATACGGTAGACTGGGGTTTTGAAATTCCAAAAATCTTTCCGAGAGCTTACAAACCCCAACATTTCAAAAATTGATATTATTCCCAGATCCCATAGCCCATAAATCCTAACTCACATTCAAATGATTTCCTTCCTCAATAAACTCATCGAGCGCTGACAAAGATGTTCCTGGATTTGGATTGGTGAAATCGGACATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGACAAATCCAACTTCCTAT</pcr_primer_p1>
		<pcr_primer_p2>CGGTAACCAATTAAATAAAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTGACAAATCCAACTTCCTATTTGTAATTTAAATCATTTTTGAAAAAAAAAATTCTACAGTAATTCCTAATACTCTGGAAAAAATCGAAGTTCAAAGTCTGGACTTCCTTGATCAATTTTAGAAATGTAGTTTTTTTCAGAGTTTGCTAGTTTATAAAAAGTTGAAAATAAACTATTTGGATAAGATGTTTTAATTTGAATTAGTTGCGGTCTCGAATTCCCAGAATTTTTATTTAATTGGTTACCG</canonical_amplicon>
		<polymorphic_amplicon>AATTGACAAATCCAACTTCCTATTTGTAATTTAAATCATTTTTGAAAAAAAAAATTCTACAGTAATTCCTAATACTCTGGAAAAAATCGAAGTTCAAAGTCTGGACTTCCTTGATCAATTTTAGAAATGTAGTTTTTTTCAGAGTTTGCTAGTTWATAAAAAGTTGAAAATAAACTATTTGGATAAGATGTTTTAATTTGAATTAGTTGCGGTCTCGAATTCCCAGAATTTTTATTTAATTGGTTACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20499</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>957071</contig_pos>
        <strand>+</strand>
        <context>AGAAGCGAAC[C/T]CAATACGCGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAGAATTTTTATTTAATTGGTTACCGTATATTCTTTCAAAGAAGCGAAC</left_flank>
        <right_flank>CAATACGCGCACTTTGAGCTCAATTATCTCGGCTCGTCTAGAAGATATCG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACACTGTCAATAGAAAAGTATGAAAATACCAATATAGGTCGAAAGAGGATAATTTTATCATTAAGCTCCGCCCAAAATCAACATCTTGGCACTTGATCAATGACCCATTTATTGGGTTTTGTGATATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTTCAAGCTGACAATCTTGCTACAGTAACCTATATAAACTTCGACTATGAGACAATAAGAATTGACAAATCCAACTTCCTATTTGTAATTTAAATCATTTTTGAAAAAAAAAATTCTACAGTAATTCCTAATACTCTGGAAAAAATCGAAGTTCAAAGTCTGGACTTCCTTGATCAATTTTAGAAATGTAGTTTTTTTCAGAGTTTGCTAGTTTATAAAAAGTTGAAAATAAACTATTTGGATAAGATGTTTTAATTTGAATTAGTTGCGGTCTCGAATTCCCAGAATTTTTATTTAATTGGTTACCGTATATTCTTTCAAAGAAGCGAACTCAATACGCGCACTTTGAGCTCAATTATCTCGGCTCGTCTAGAAGATATCGAAATGTGTTCTACTAATAAATTTTCAATTATGATAATAAAATTATTGTGTCAGTTGACACATTTTCAATATCTTTCAAAGGTACCGAGATAATTGAGCTCAAAGTGCACATTAGGGTTGGCTACTACTAAAGCAAATACGGTAGACTGGGGTTTTGAAATTCCAAAAATCTTTCCGAGAGCTTACAAACCCCAACATTTCAAAAATTGATATTATTCCCAGATCCCATAGCCCATAAATCCTAACTCACATTCAAATGATTTCCTTCCTCAATAAACTCATCGAGCGCTGACAAAGATGTTCCTGGATTTGGATTGGTGAAATCGGACATTCCAGACGCTAATAAGTCAGCTCCACGGGTGCACCACGCATTTGCCTGAAAAATATGTTTCGTACTATCCAACCCCCATCTACAAACCTGTGCAATTTGCTCATGCATCGTAGCACTACG</canonical>
            <polymorphic>AACACTGTCAATAGAAAAGTATGAAAATACCAATATAGGTCGAAAGAGGATAATTTTATCATTAAGCTCCGCCCAAAATCAACATCTTGGCACTTGATCAATGACCCATTTATTGGGTTTTGTGATATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTTCAAGCTGACAATCTTGCTACAGTAACCTATATAAACTTCGACTATGAGACAATAAGAATTGACAAATCCAACTTCCTATTTGTAATTTAAATCATTTTTGAAAAAAAAAATTCTACAGTAATTCCTAATACTCTGGAAAAAATCGAAGTTCAAAGTCTGGACTTCCTTGATCAATTTTAGAAATGTAGTTTTTTTCAGAGTTTGCTAGTTTATAAAAAGTTGAAAATAAACTATTTGGATAAGATGTTTTAATTTGAATTAGTTGCGGTCTCGAATTCCCAGAATTTTTATTTAATTGGTTACCGTATATTCTTTCAAAGAAGCGAACYCAATACGCGCACTTTGAGCTCAATTATCTCGGCTCGTCTAGAAGATATCGAAATGTGTTCTACTAATAAATTTTCAATTATGATAATAAAATTATTGTGTCAGTTGACACATTTTCAATATCTTTCAAAGGTACCGAGATAATTGAGCTCAAAGTGCACATTAGGGTTGGCTACTACTAAAGCAAATACGGTAGACTGGGGTTTTGAAATTCCAAAAATCTTTCCGAGAGCTTACAAACCCCAACATTTCAAAAATTGATATTATTCCCAGATCCCATAGCCCATAAATCCTAACTCACATTCAAATGATTTCCTTCCTCAATAAACTCATCGAGCGCTGACAAAGATGTTCCTGGATTTGGATTGGTGAAATCGGACATTCCAGACGCTAATAAGTCAGCTCCACGGGTGCACCACGCATTTGCCTGAAAAATATGTTTCGTACTATCCAACCCCCATCTACAAACCTGTGCAATTTGCTCATGCATCGTAGCACTACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCCAGAATTTTTATTTAATTG</pcr_primer_p1>
		<pcr_primer_p2>CAGTCTACCGTATTTGCTTTAGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTCCCAGAATTTTTATTTAATTGGTTACCGTATATTCTTTCAAAGAAGCGAACTCAATACGCGCACTTTGAGCTCAATTATCTCGGCTCGTCTAGAAGATATCGAAATGTGTTCTACTAATAAATTTTCAATTATGATAATAAAATTATTGTGTCAGTTGACACATTTTCAATATCTTTCAAAGGTACCGAGATAATTGAGCTCAAAGTGCACATTAGGGTTGGCTACTACTAAAGCAAATACGGTAGACTG</canonical_amplicon>
		<polymorphic_amplicon>TTCCCAGAATTTTTATTTAATTGGTTACCGTATATTCTTTCAAAGAAGCGAACYCAATACGCGCACTTTGAGCTCAATTATCTCGGCTCGTCTAGAAGATATCGAAATGTGTTCTACTAATAAATTTTCAATTATGATAATAAAATTATTGTGTCAGTTGACACATTTTCAATATCTTTCAAAGGTACCGAGATAATTGAGCTCAAAGTGCACATTAGGGTTGGCTACTACTAAAGCAAATACGGTAGACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20500</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>958929</contig_pos>
        <strand>+</strand>
        <context>AAAGCTTCTA[A/G]AATTGATTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGGCTTGTCATGTTTCCCCTAATCGTTTCTATTTGAAAAAGCTTCTA</left_flank>
        <right_flank>AATTGATTGTTTTAAAGGACCACATTGGCCAGAATTTTTTCGTTTTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTCTAAAAAATAATTAGTTTATGCATCATTAACTTATTAAGTAGCGGTCCTTTATCTCATTTTTCTTCAAGAAAACAAAAGATAAAGCTTAGGAGGGGAAGATTGTAAGATATTGTACGGCGAATGAGATAAATGATTGGGTGGAACAGGAACTAGAAGTAACGAACAACACAACTGATCATTTACTTTCTTTTTACACTTACAAGAAGCGCTGAAACTAGAACTTTGAGAAAAATAGGTTCAATTCCTTGTTTACGCCGCAAATCCAACTAGCTGACCGATGTGTGAAGTCTGAGAGAGTGGGTAAAAGGGTCAGCGGCGAGAAATCTGACACCTTCCTGTTTTTTAAGAAACGGACAATAAATAAAGAGGCTGGAGTACTAGTAGTTGTACTAGTACTACTAGACCCGTCAATTTTCGATTCACGGAAGTTGGCAAATTGCTTTTTTTTGGCTTGTCATGTTTCCCCTAATCGTTTCTATTTGAAAAAGCTTCTAAAATTGATTGTTTTAAAGGACCACATTGGCCAGAATTTTTTCGTTTTTTTTTCTCAGAAAATTAATGGGAAGAAGTCATTAAAGTAAGTGACGGATGGTCGACGAACATTAATAAATTATCCTAGCCCGTAAAAATTTCCAGGAAAAAACGATGAGAGAAAAATTGTCGATCATATCACAGGTGAGAAAAAGAGGAGGATGATCCGTGAAAAAGTGGAACAGAAAAACTTGATAAAATGAGTGAGAGAGAAGAAGATATGATATGAAAAGGTGCCGCTGGTGTCAGAAAAAAGATAAATGACTAGAGATGAACATTTGTAAGGGGTCTTCAAACCCAGATTTTGATGGAAATTATGGGATAGGTTAGGAATAGCTTGTCTATACATTATATTAGAAGCTGTTCGACAGTTTCAGTGCCAAAATCTCGTTTTCAATGCGATTTTCTCAATTGCGGGACGTTTCAGAACATGAAACTAGTTGTATAATACCTAGCATTCAATG</canonical>
            <polymorphic>GATTCTAAAAAATAATTAGTTTATGCATCATTAACTTATTAAGTAGCGGTCCTTTATCTCATTTTTCTTCAAGAAAACAAAAGATAAAGCTTAGGAGGGGAAGATTGTAAGATATTGTACGGCGAATGAGATAAATGATTGGGTGGAACAGGAACTAGAAGTAACGAACAACACAACTGATCATTTACTTTCTTTTTACACTTACAAGAAGCGCTGAAACTAGAACTTTGAGAAAAATAGGTTCAATTCCTTGTTTACGCCGCAAATCCAACTAGCTGACCGATGTGTGAAGTCTGAGAGAGTGGGTAAAAGGGTCAGCGGCGAGAAATCTGACACCTTCCTGTTTTTTAAGAAACGGACAATAAATAAAGAGGCTGGAGTACTAGTAGTTGTACTAGTACTACTAGACCCGTCAATTTTCGATTCACGGAAGTTGGCAAATTGCTTTTTTTTGGCTTGTCATGTTTCCCCTAATCGTTTCTATTTGAAAAAGCTTCTARAATTGATTGTTTTAAAGGACCACATTGGCCAGAATTTTTTCGTTTTTTTTTCTCAGAAAATTAATGGGAAGAAGTCATTAAAGTAAGTGACGGATGGTCGACGAACATTAATAAATTATCCTAGCCCGTAAAAATTTCCAGGAAAAAACGATGAGAGAAAAATTGTCGATCATATCACAGGTGAGAAAAAGAGGAGGATGATCCGTGAAAAAGTGGAACAGAAAAACTTGATAAAATGAGTGAGAGAGAAGAAGATATGATATGAAAAGGTGCCGCTGGTGTCAGAAAAAAGATAAATGACTAGAGATGAACATTTGTAAGGGGTCTTCAAACCCAGATTTTGATGGAAATTATGGGATAGGTTAGGAATAGCTTGTCTATACATTATATTAGAAGCTGTTCGACAGTTTCAGTGCCAAAATCTCGTTTTCAATGCGATTTTCTCAATTGCGGGACGTTTCAGAACATGAAACTAGTTGTATAATACCTAGCATTCAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTAAGAAACGGACAATAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCCGTCACTTACTTTAATGACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTAAGAAACGGACAATAAATAAAGAGGCTGGAGTACTAGTAGTTGTACTAGTACTACTAGACCCGTCAATTTTCGATTCACGGAAGTTGGCAAATTGCTTTTTTTTGGCTTGTCATGTTTCCCCTAATCGTTTCTATTTGAAAAAGCTTCTAAAATTGATTGTTTTAAAGGACCACATTGGCCAGAATTTTTTCGTTTTTTTTTCTCAGAAAATTAATGGGAAGAAGTCATTAAAGTAAGTGACGGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTAAGAAACGGACAATAAATAAAGAGGCTGGAGTACTAGTAGTTGTACTAGTACTACTAGACCCGTCAATTTTCGATTCACGGAAGTTGGCAAATTGCTTTTTTTTGGCTTGTCATGTTTCCCCTAATCGTTTCTATTTGAAAAAGCTTCTARAATTGATTGTTTTAAAGGACCACATTGGCCAGAATTTTTTCGTTTTTTTTTCTCAGAAAATTAATGGGAAGAAGTCATTAAAGTAAGTGACGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20501</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>958912</contig_pos>
        <strand></strand>
        <context>AATCGTTTCT[A/G]TTTGAAAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTGGCAAATTGCTTTTTTTTGGCTTGTCATGTTTCCCCTAATCGTTTCT</left_flank>
        <right_flank>TTTGAAAAAGCTTCTAAAATTGATTGTTTTAAAGGACCACATTGGCCAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATATCCAGTTGAGTGGATTCTAAAAAATAATTAGTTTATGCATCATTAACTTATTAAGTAGCGGTCCTTTATCTCATTTTTCTTCAAGAAAACAAAAGATAAAGCTTAGGAGGGGAAGATTGTAAGATATTGTACGGCGAATGAGATAAATGATTGGGTGGAACAGGAACTAGAAGTAACGAACAACACAACTGATCATTTACTTTCTTTTTACACTTACAAGAAGCGCTGAAACTAGAACTTTGAGAAAAATAGGTTCAATTCCTTGTTTACGCCGCAAATCCAACTAGCTGACCGATGTGTGAAGTCTGAGAGAGTGGGTAAAAGGGTCAGCGGCGAGAAATCTGACACCTTCCTGTTTTTTAAGAAACGGACAATAAATAAAGAGGCTGGAGTACTAGTAGTTGTACTAGTACTACTAGACCCGTCAATTTTCGATTCACGGAAGTTGGCAAATTGCTTTTTTTTGGCTTGTCATGTTTCCCCTAATCGTTTCTATTTGAAAAAGCTTCTAAAATTGATTGTTTTAAAGGACCACATTGGCCAGAATTTTTTCGTTTTTTTTTCTCAGAAAATTAATGGGAAGAAGTCATTAAAGTAAGTGACGGATGGTCGACGAACATTAATAAATTATCCTAGCCCGTAAAAATTTCCAGGAAAAAACGATGAGAGAAAAATTGTCGATCATATCACAGGTGAGAAAAAGAGGAGGATGATCCGTGAAAAAGTGGAACAGAAAAACTTGATAAAATGAGTGAGAGAGAAGAAGATATGATATGAAAAGGTGCCGCTGGTGTCAGAAAAAAGATAAATGACTAGAGATGAACATTTGTAAGGGGTCTTCAAACCCAGATTTTGATGGAAATTATGGGATAGGTTAGGAATAGCTTGTCTATACATTATATTAGAAGCTGTTCGACAGTTTCAGTGCCAAAATCTCGTTTTCAATGCGATTTTCTCAATTGCGGGACGTTTCAGAACATGAAACTAGTTGTATA</canonical>
            <polymorphic>TAATATCCAGTTGAGTGGATTCTAAAAAATAATTAGTTTATGCATCATTAACTTATTAAGTAGCGGTCCTTTATCTCATTTTTCTTCAAGAAAACAAAAGATAAAGCTTAGGAGGGGAAGATTGTAAGATATTGTACGGCGAATGAGATAAATGATTGGGTGGAACAGGAACTAGAAGTAACGAACAACACAACTGATCATTTACTTTCTTTTTACACTTACAAGAAGCGCTGAAACTAGAACTTTGAGAAAAATAGGTTCAATTCCTTGTTTACGCCGCAAATCCAACTAGCTGACCGATGTGTGAAGTCTGAGAGAGTGGGTAAAAGGGTCAGCGGCGAGAAATCTGACACCTTCCTGTTTTTTAAGAAACGGACAATAAATAAAGAGGCTGGAGTACTAGTAGTTGTACTAGTACTACTAGACCCGTCAATTTTCGATTCACGGAAGTTGGCAAATTGCTTTTTTTTGGCTTGTCATGTTTCCCCTAATCGTTTCTRTTTGAAAAAGCTTCTAAAATTGATTGTTTTAAAGGACCACATTGGCCAGAATTTTTTCGTTTTTTTTTCTCAGAAAATTAATGGGAAGAAGTCATTAAAGTAAGTGACGGATGGTCGACGAACATTAATAAATTATCCTAGCCCGTAAAAATTTCCAGGAAAAAACGATGAGAGAAAAATTGTCGATCATATCACAGGTGAGAAAAAGAGGAGGATGATCCGTGAAAAAGTGGAACAGAAAAACTTGATAAAATGAGTGAGAGAGAAGAAGATATGATATGAAAAGGTGCCGCTGGTGTCAGAAAAAAGATAAATGACTAGAGATGAACATTTGTAAGGGGTCTTCAAACCCAGATTTTGATGGAAATTATGGGATAGGTTAGGAATAGCTTGTCTATACATTATATTAGAAGCTGTTCGACAGTTTCAGTGCCAAAATCTCGTTTTCAATGCGATTTTCTCAATTGCGGGACGTTTCAGAACATGAAACTAGTTGTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTAAGAAACGGACAATAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCCGTCACTTACTTTAATGACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTAAGAAACGGACAATAAATAAAGAGGCTGGAGTACTAGTAGTTGTACTAGTACTACTAGACCCGTCAATTTTCGATTCACGGAAGTTGGCAAATTGCTTTTTTTTGGCTTGTCATGTTTCCCCTAATCGTTTCTATTTGAAAAAGCTTCTAAAATTGATTGTTTTAAAGGACCACATTGGCCAGAATTTTTTCGTTTTTTTTTCTCAGAAAATTAATGGGAAGAAGTCATTAAAGTAAGTGACGGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTAAGAAACGGACAATAAATAAAGAGGCTGGAGTACTAGTAGTTGTACTAGTACTACTAGACCCGTCAATTTTCGATTCACGGAAGTTGGCAAATTGCTTTTTTTTGGCTTGTCATGTTTCCCCTAATCGTTTCTRTTTGAAAAAGCTTCTAAAATTGATTGTTTTAAAGGACCACATTGGCCAGAATTTTTTCGTTTTTTTTTCTCAGAAAATTAATGGGAAGAAGTCATTAAAGTAAGTGACGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20502</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>958899</contig_pos>
        <strand></strand>
        <context>TCATGTTTYC[C/A]CTAATCGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TCGATTCACGGAAGTTGGCAAATTGCTTTTTTTTGGCTTGTCATGTTTCC</left_flank>
        <right_flank>CTAATCGTTTCTATTTGAAAAAGCTTCTAAAATTGATTGTTTTAAAGGAC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATAGTATTAATTAATATCCAGTTGAGTGGATTCTAAAAAATAATTAGTTTATGCATCATTAACTTATTAAGTAGCGGTCCTTTATCTCATTTTTCTTCAAGAAAACAAAAGATAAAGCTTAGGAGGGGAAGATTGTAAGATATTGTACGGCGAATGAGATAAATGATTGGGTGGAACAGGAACTAGAAGTAACGAACAACACAACTGATCATTTACTTTCTTTTTACACTTACAAGAAGCGCTGAAACTAGAACTTTGAGAAAAATAGGTTCAATTCCTTGTTTACGCCGCAAATCCAACTAGCTGACCGATGTGTGAAGTCTGAGAGAGTGGGTAAAAGGGTCAGCGGCGAGAAATCTGACACCTTCCTGTTTTTTAAGAAACGGACAATAAATAAAGAGGCTGGAGTACTAGTAGTTGTACTAGTACTACTAGACCCGTCAATTTTCGATTCACGGAAGTTGGCAAATTGCTTTTTTTTGGCTTGTCATGTTTCCCCTAATCGTTTCTATTTGAAAAAGCTTCTAAAATTGATTGTTTTAAAGGACCACATTGGCCAGAATTTTTTCGTTTTTTTTTCTCAGAAAATTAATGGGAAGAAGTCATTAAAGTAAGTGACGGATGGTCGACGAACATTAATAAATTATCCTAGCCCGTAAAAATTTCCAGGAAAAAACGATGAGAGAAAAATTGTCGATCATATCACAGGTGAGAAAAAGAGGAGGATGATCCGTGAAAAAGTGGAACAGAAAAACTTGATAAAATGAGTGAGAGAGAAGAAGATATGATATGAAAAGGTGCCGCTGGTGTCAGAAAAAAGATAAATGACTAGAGATGAACATTTGTAAGGGGTCTTCAAACCCAGATTTTGATGGAAATTATGGGATAGGTTAGGAATAGCTTGTCTATACATTATATTAGAAGCTGTTCGACAGTTTCAGTGCCAAAATCTCGTTTTCAATGCGATTTTCTCAATTGCGGGACGTTTCAGAACATGA</canonical>
            <polymorphic>CAATAGTATTAATTAATATCCAGTTGAGTGGATTCTAAAAAATAATTAGTTTATGCATCATTAACTTATTAAGTAGCGGTCCTTTATCTCATTTTTCTTCAAGAAAACAAAAGATAAAGCTTAGGAGGGGAAGATTGTAAGATATTGTACGGCGAATGAGATAAATGATTGGGTGGAACAGGAACTAGAAGTAACGAACAACACAACTGATCATTTACTTTCTTTTTACACTTACAAGAAGCGCTGAAACTAGAACTTTGAGAAAAATAGGTTCAATTCCTTGTTTACGCCGCAAATCCAACTAGCTGACCGATGTGTGAAGTCTGAGAGAGTGGGTAAAAGGGTCAGCGGCGAGAAATCTGACACCTTCCTGTTTTTTAAGAAACGGACAATAAATAAAGAGGCTGGAGTACTAGTAGTTGTACTAGTACTACTAGACCCGTCAATTTTCGATTCACGGAAGTTGGCAAATTGCTTTTTTTTGGCTTGTCATGTTTCCMCTAATCGTTTCTATTTGAAAAAGCTTCTAAAATTGATTGTTTTAAAGGACCACATTGGCCAGAATTTTTTCGTTTTTTTTTCTCAGAAAATTAATGGGAAGAAGTCATTAAAGTAAGTGACGGATGGTCGACGAACATTAATAAATTATCCTAGCCCGTAAAAATTTCCAGGAAAAAACGATGAGAGAAAAATTGTCGATCATATCACAGGTGAGAAAAAGAGGAGGATGATCCGTGAAAAAGTGGAACAGAAAAACTTGATAAAATGAGTGAGAGAGAAGAAGATATGATATGAAAAGGTGCCGCTGGTGTCAGAAAAAAGATAAATGACTAGAGATGAACATTTGTAAGGGGTCTTCAAACCCAGATTTTGATGGAAATTATGGGATAGGTTAGGAATAGCTTGTCTATACATTATATTAGAAGCTGTTCGACAGTTTCAGTGCCAAAATCTCGTTTTCAATGCGATTTTCTCAATTGCGGGACGTTTCAGAACATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTAAGAAACGGACAATAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCCGTCACTTACTTTAATGACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTAAGAAACGGACAATAAATAAAGAGGCTGGAGTACTAGTAGTTGTACTAGTACTACTAGACCCGTCAATTTTCGATTCACGGAAGTTGGCAAATTGCTTTTTTTTGGCTTGTCATGTTTCCCCTAATCGTTTCTATTTGAAAAAGCTTCTAAAATTGATTGTTTTAAAGGACCACATTGGCCAGAATTTTTTCGTTTTTTTTTCTCAGAAAATTAATGGGAAGAAGTCATTAAAGTAAGTGACGGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTAAGAAACGGACAATAAATAAAGAGGCTGGAGTACTAGTAGTTGTACTAGTACTACTAGACCCGTCAATTTTCGATTCACGGAAGTTGGCAAATTGCTTTTTTTTGGCTTGTCATGTTTCCMCTAATCGTTTCTATTTGAAAAAGCTTCTAAAATTGATTGTTTTAAAGGACCACATTGGCCAGAATTTTTTCGTTTTTTTTTCTCAGAAAATTAATGGGAAGAAGTCATTAAAGTAAGTGACGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20503</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>958897</contig_pos>
        <strand></strand>
        <context>TGTCATGTTT[C/T]CMCTAATCGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCGATTCACGGAAGTTGGCAAATTGCTTTTTTTTGGCTTGTCATGTTT</left_flank>
        <right_flank>CCCTAATCGTTTCTATTTGAAAAAGCTTCTAAAATTGATTGTTTTAAAGG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAATAGTATTAATTAATATCCAGTTGAGTGGATTCTAAAAAATAATTAGTTTATGCATCATTAACTTATTAAGTAGCGGTCCTTTATCTCATTTTTCTTCAAGAAAACAAAAGATAAAGCTTAGGAGGGGAAGATTGTAAGATATTGTACGGCGAATGAGATAAATGATTGGGTGGAACAGGAACTAGAAGTAACGAACAACACAACTGATCATTTACTTTCTTTTTACACTTACAAGAAGCGCTGAAACTAGAACTTTGAGAAAAATAGGTTCAATTCCTTGTTTACGCCGCAAATCCAACTAGCTGACCGATGTGTGAAGTCTGAGAGAGTGGGTAAAAGGGTCAGCGGCGAGAAATCTGACACCTTCCTGTTTTTTAAGAAACGGACAATAAATAAAGAGGCTGGAGTACTAGTAGTTGTACTAGTACTACTAGACCCGTCAATTTTCGATTCACGGAAGTTGGCAAATTGCTTTTTTTTGGCTTGTCATGTTTCCCCTAATCGTTTCTATTTGAAAAAGCTTCTAAAATTGATTGTTTTAAAGGACCACATTGGCCAGAATTTTTTCGTTTTTTTTTCTCAGAAAATTAATGGGAAGAAGTCATTAAAGTAAGTGACGGATGGTCGACGAACATTAATAAATTATCCTAGCCCGTAAAAATTTCCAGGAAAAAACGATGAGAGAAAAATTGTCGATCATATCACAGGTGAGAAAAAGAGGAGGATGATCCGTGAAAAAGTGGAACAGAAAAACTTGATAAAATGAGTGAGAGAGAAGAAGATATGATATGAAAAGGTGCCGCTGGTGTCAGAAAAAAGATAAATGACTAGAGATGAACATTTGTAAGGGGTCTTCAAACCCAGATTTTGATGGAAATTATGGGATAGGTTAGGAATAGCTTGTCTATACATTATATTAGAAGCTGTTCGACAGTTTCAGTGCCAAAATCTCGTTTTCAATGCGATTTTCTCAATTGCGGGACGTTTCAGAACAT</canonical>
            <polymorphic>AACAATAGTATTAATTAATATCCAGTTGAGTGGATTCTAAAAAATAATTAGTTTATGCATCATTAACTTATTAAGTAGCGGTCCTTTATCTCATTTTTCTTCAAGAAAACAAAAGATAAAGCTTAGGAGGGGAAGATTGTAAGATATTGTACGGCGAATGAGATAAATGATTGGGTGGAACAGGAACTAGAAGTAACGAACAACACAACTGATCATTTACTTTCTTTTTACACTTACAAGAAGCGCTGAAACTAGAACTTTGAGAAAAATAGGTTCAATTCCTTGTTTACGCCGCAAATCCAACTAGCTGACCGATGTGTGAAGTCTGAGAGAGTGGGTAAAAGGGTCAGCGGCGAGAAATCTGACACCTTCCTGTTTTTTAAGAAACGGACAATAAATAAAGAGGCTGGAGTACTAGTAGTTGTACTAGTACTACTAGACCCGTCAATTTTCGATTCACGGAAGTTGGCAAATTGCTTTTTTTTGGCTTGTCATGTTTYCCCTAATCGTTTCTATTTGAAAAAGCTTCTAAAATTGATTGTTTTAAAGGACCACATTGGCCAGAATTTTTTCGTTTTTTTTTCTCAGAAAATTAATGGGAAGAAGTCATTAAAGTAAGTGACGGATGGTCGACGAACATTAATAAATTATCCTAGCCCGTAAAAATTTCCAGGAAAAAACGATGAGAGAAAAATTGTCGATCATATCACAGGTGAGAAAAAGAGGAGGATGATCCGTGAAAAAGTGGAACAGAAAAACTTGATAAAATGAGTGAGAGAGAAGAAGATATGATATGAAAAGGTGCCGCTGGTGTCAGAAAAAAGATAAATGACTAGAGATGAACATTTGTAAGGGGTCTTCAAACCCAGATTTTGATGGAAATTATGGGATAGGTTAGGAATAGCTTGTCTATACATTATATTAGAAGCTGTTCGACAGTTTCAGTGCCAAAATCTCGTTTTCAATGCGATTTTCTCAATTGCGGGACGTTTCAGAACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTAAGAAACGGACAATAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCCGTCACTTACTTTAATGACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTAAGAAACGGACAATAAATAAAGAGGCTGGAGTACTAGTAGTTGTACTAGTACTACTAGACCCGTCAATTTTCGATTCACGGAAGTTGGCAAATTGCTTTTTTTTGGCTTGTCATGTTTCCCCTAATCGTTTCTATTTGAAAAAGCTTCTAAAATTGATTGTTTTAAAGGACCACATTGGCCAGAATTTTTTCGTTTTTTTTTCTCAGAAAATTAATGGGAAGAAGTCATTAAAGTAAGTGACGGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTAAGAAACGGACAATAAATAAAGAGGCTGGAGTACTAGTAGTTGTACTAGTACTACTAGACCCGTCAATTTTCGATTCACGGAAGTTGGCAAATTGCTTTTTTTTGGCTTGTCATGTTTYCCCTAATCGTTTCTATTTGAAAAAGCTTCTAAAATTGATTGTTTTAAAGGACCACATTGGCCAGAATTTTTTCGTTTTTTTTTCTCAGAAAATTAATGGGAAGAAGTCATTAAAGTAAGTGACGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20504</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>958752</contig_pos>
        <strand>+</strand>
        <context>GGTCAGCGGC[A/G]AGAAATCTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGCTGACCGATGTGTGAAGTCTGAGAGAGTGGGTAAAAGGGTCAGCGGC</left_flank>
        <right_flank>AGAAATCTGACACCTTCCTGTTTTTTAAGAAACGGACAATAAATAAAGAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATAACTCACCATAGCTCCTTCGGTGTATTGTCTGTGCTGTTCGGCAAGATGCAAAGCCTTTTCGGTGCAGTTTCCGACTTCTCGATGCTCCTCCAAATACAGCATGTGGCGTGCGAATGCGGCTTGTAGCTGAAATAAAAAAAAACAATAGTATTAATTAATATCCAGTTGAGTGGATTCTAAAAAATAATTAGTTTATGCATCATTAACTTATTAAGTAGCGGTCCTTTATCTCATTTTTCTTCAAGAAAACAAAAGATAAAGCTTAGGAGGGGAAGATTGTAAGATATTGTACGGCGAATGAGATAAATGATTGGGTGGAACAGGAACTAGAAGTAACGAACAACACAACTGATCATTTACTTTCTTTTTACACTTACAAGAAGCGCTGAAACTAGAACTTTGAGAAAAATAGGTTCAATTCCTTGTTTACGCCGCAAATCCAACTAGCTGACCGATGTGTGAAGTCTGAGAGAGTGGGTAAAAGGGTCAGCGGCGAGAAATCTGACACCTTCCTGTTTTTTAAGAAACGGACAATAAATAAAGAGGCTGGAGTACTAGTAGTTGTACTAGTACTACTAGACCCGTCAATTTTCGATTCACGGAAGTTGGCAAATTGCTTTTTTTTGGCTTGTCATGTTTCCCCTAATCGTTTCTATTTGAAAAAGCTTCTAAAATTGATTGTTTTAAAGGACCACATTGGCCAGAATTTTTTCGTTTTTTTTTCTCAGAAAATTAATGGGAAGAAGTCATTAAAGTAAGTGACGGATGGTCGACGAACATTAATAAATTATCCTAGCCCGTAAAAATTTCCAGGAAAAAACGATGAGAGAAAAATTGTCGATCATATCACAGGTGAGAAAAAGAGGAGGATGATCCGTGAAAAAGTGGAACAGAAAAACTTGATAAAATGAGTGAGAGAGAAGAAGATATGATATGAAAAGGTGCCGCTGGTGTCAGAAAAAAGATAAATGACTAGAGATGAACATTTGTAAGGG</canonical>
            <polymorphic>CGATAACTCACCATAGCTCCTTCGGTGTATTGTCTGTGCTGTTCGGCAAGATGCAAAGCCTTTTCGGTGCAGTTTCCGACTTCTCGATGCTCCTCCAAATACAGCATGTGGCGTGCGAATGCGGCTTGTAGCTGAAATAAAAAAAAACAATAGTATTAATTAATATCCAGTTGAGTGGATTCTAAAAAATAATTAGTTTATGCATCATTAACTTATTAAGTAGCGGTCCTTTATCTCATTTTTCTTCAAGAAAACAAAAGATAAAGCTTAGGAGGGGAAGATTGTAAGATATTGTACGGCGAATGAGATAAATGATTGGGTGGAACAGGAACTAGAAGTAACGAACAACACAACTGATCATTTACTTTCTTTTTACACTTACAAGAAGCGCTGAAACTAGAACTTTGAGAAAAATAGGTTCAATTCCTTGTTTACGCCGCAAATCCAACTAGCTGACCGATGTGTGAAGTCTGAGAGAGTGGGTAAAAGGGTCAGCGGCRAGAAATCTGACACCTTCCTGTTTTTTAAGAAACGGACAATAAATAAAGAGGCTGGAGTACTAGTAGTTGTACTAGTACTACTAGACCCGTCAATTTTCGATTCACGGAAGTTGGCAAATTGCTTTTTTTTGGCTTGTCATGTTTCCCCTAATCGTTTCTATTTGAAAAAGCTTCTAAAATTGATTGTTTTAAAGGACCACATTGGCCAGAATTTTTTCGTTTTTTTTTCTCAGAAAATTAATGGGAAGAAGTCATTAAAGTAAGTGACGGATGGTCGACGAACATTAATAAATTATCCTAGCCCGTAAAAATTTCCAGGAAAAAACGATGAGAGAAAAATTGTCGATCATATCACAGGTGAGAAAAAGAGGAGGATGATCCGTGAAAAAGTGGAACAGAAAAACTTGATAAAATGAGTGAGAGAGAAGAAGATATGATATGAAAAGGTGCCGCTGGTGTCAGAAAAAAGATAAATGACTAGAGATGAACATTTGTAAGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGGAACTAGAAGTAACGAACA</pcr_primer_p1>
		<pcr_primer_p2>CAACTACTAGTACTCCAGCCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACAGGAACTAGAAGTAACGAACAACACAACTGATCATTTACTTTCTTTTTACACTTACAAGAAGCGCTGAAACTAGAACTTTGAGAAAAATAGGTTCAATTCCTTGTTTACGCCGCAAATCCAACTAGCTGACCGATGTGTGAAGTCTGAGAGAGTGGGTAAAAGGGTCAGCGGCGAGAAATCTGACACCTTCCTGTTTTTTAAGAAACGGACAATAAATAAAGAGGCTGGAGTACTAGTAGTTG</canonical_amplicon>
		<polymorphic_amplicon>ACAGGAACTAGAAGTAACGAACAACACAACTGATCATTTACTTTCTTTTTACACTTACAAGAAGCGCTGAAACTAGAACTTTGAGAAAAATAGGTTCAATTCCTTGTTTACGCCGCAAATCCAACTAGCTGACCGATGTGTGAAGTCTGAGAGAGTGGGTAAAAGGGTCAGCGGCRAGAAATCTGACACCTTCCTGTTTTTTAAGAAACGGACAATAAATAAAGAGGCTGGAGTACTAGTAGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20505</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>985230</contig_pos>
        <strand>+</strand>
        <context>AAAGGAAAAT[A/C]ACCGCCTCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCAAAAATGAATATGTTCACTTTTCTGAACACGATAAAAAAAGGAAAAT</left_flank>
        <right_flank>ACCGCCTCCACCTTTTGAGAAAGTTGGGAAAAAATGAAATAACCATTTCT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTGAAGTATCCAGGTGGTGGACGAATAGTTTTTCTAGTCCTCCGCCTAGAACGCACAATCAAAAACATGCACAATCAAAATTTTCAAGGAGAGTTTTACCATTACCGATCAATTTTCCTCAGGTTTCAATTTATGAAAAAATTTAAAAAATTCTGATACCGTAAAACCTGTATTAGAAGGGCCGGCCTTTCTATTTTTCCGAACCCCTCTCGGAGGGCCCTTCTAGTAGAGGGGCCCTTTTATTAATTTGGCCCTTCTTATACAGGTTTTACGGTAAATAAAAAAATCGGAAATCAAATAACACACTTAACAGTTTGAATACGAATATTCAGTGCGCTGGCAGGGGACTAGAAAACTCCCGCTCGACTATTCGTCCACCGGACACCATTCTGGAAATATAAGTTTTCTTTTCGATGTGGTTTTCTTAGTTTAAAAGTTTTTCAAATCTCCAAAAATGAATATGTTCACTTTTCTGAACACGATAAAAAAAGGAAAATCACCGCCTCCACCTTTTGAGAAAGTTGGGAAAAAATGAAATAACCATTTCTCTATTATAATAAAATTTTTGGAAATTTTAAGCATTCATGGAATTCAATTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATCAAAATGTGTTAAAATTTATCTATTTTTCGAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAATGAAGAAAATTCAAAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACTACACCTGACAGCCTTTTTTTCAAGTCACCGACAGTGGTTTTTTACGTTTTTTACCTGCCGGACATGAAATTGAAAAAAATCCGGAAAATTTGCCACGTAGGAAAGGCACCCGCTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGACGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGCCGTTTTTCGGAGATTTCGG</canonical>
            <polymorphic>ATTTGAAGTATCCAGGTGGTGGACGAATAGTTTTTCTAGTCCTCCGCCTAGAACGCACAATCAAAAACATGCACAATCAAAATTTTCAAGGAGAGTTTTACCATTACCGATCAATTTTCCTCAGGTTTCAATTTATGAAAAAATTTAAAAAATTCTGATACCGTAAAACCTGTATTAGAAGGGCCGGCCTTTCTATTTTTCCGAACCCCTCTCGGAGGGCCCTTCTAGTAGAGGGGCCCTTTTATTAATTTGGCCCTTCTTATACAGGTTTTACGGTAAATAAAAAAATCGGAAATCAAATAACACACTTAACAGTTTGAATACGAATATTCAGTGCGCTGGCAGGGGACTAGAAAACTCCCGCTCGACTATTCGTCCACCGGACACCATTCTGGAAATATAAGTTTTCTTTTCGATGTGGTTTTCTTAGTTTAAAAGTTTTTCAAATCTCCAAAAATGAATATGTTCACTTTTCTGAACACGATAAAAAAAGGAAAATMACCGCCTCCACCTTTTGAGAAAGTTGGGAAAAAATGAAATAACCATTTCTCTATTATAATAAAATTTTTGGAAATTTTAAGCATTCATGGAATTCAATTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATCAAAATGTGTTAAAATTTATCTATTTTTCGAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAATGAAGAAAATTCAAAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACTACACCTGACAGCCTTTTTTTCAAGTCACCGACAGTGGTTTTTTACGTTTTTTACCTGCCGGACATGAAATTGAAAAAAATCCGGAAAATTTGCCACGTAGGAAAGGCACCCGCTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGACGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGCCGTTTTTCGGAGATTTCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>232 133 105 59 50 49 43 36 34 29 26 26 24 20 18 16 14 14 13 12 12 9 9 7 5 3 2</canonical_bands>
                <polymorphic_bands>232 133 105 59 50 49 43 36 34 29 29 26 26 24 18 16 14 14 13 12 12 9 7 5 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATCTCCAAAAATGAATATGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGAATTCCATGAATGCTTA</pcr_primer_p2>
		<pcr_amplicon_size>155</pcr_amplicon_size>
		<canonical_amplicon>CAAATCTCCAAAAATGAATATGTTCACTTTTCTGAACACGATAAAAAAAGGAAAATCACCGCCTCCACCTTTTGAGAAAGTTGGGAAAAAATGAAATAACCATTTCTCTATTATAATAAAATTTTTGGAAATTTTAAGCATTCATGGAATTCAAT</canonical_amplicon>
		<polymorphic_amplicon>CAAATCTCCAAAAATGAATATGTTCACTTTTCTGAACACGATAAAAAAAGGAAAATMACCGCCTCCACCTTTTGAGAAAGTTGGGAAAAAATGAAATAACCATTTCTCTATTATAATAAAATTTTTGGAAATTTTAAGCATTCATGGAATTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20506</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>986775</contig_pos>
        <strand>+</strand>
        <context>AAATCCCCAA[A/G]GACCCCGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACACGAAGAACACCTATGAGAACTCCCAAACCAAAATCAAAATCCCCAA</left_flank>
        <right_flank>GACCCCGAAAATTGTTATTACCGGTTAGTTTGTTTTTCGAAAGAAAAAAT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAACTCTTCCGCATCCAGGAAGAGGCGGGAAAAAAACCCGGGAGTCTACTAATAAGTCGATGTAATTCGATAGGAGAAGAAAATGCTTCATACTCTTTCCCCCCTATTTTGCCTCCTACTCATCCGTCCACACTTCATTTCTTTTCCTTGTCTTCTCTTTTTTCTATTCAACTTTTTTTTCCAATTTTCTCTGCATCTGACACCGCTGTTCAAATCCAATGTTTTATACATAATTTTTTTTTCCAAATTTTCACCTGCCTTATTTCTCAGATTTTGATTAAAAGACCGGCTCAAAAAAAAAGTTGATAGAGGTGTGAGTGAGAGCCGACCTCTTTTTTTCGAAGTTTTATGGATATTGGGTAACCTTATCACCTGGCTAAAAAAAAGAAAAATGTAGAGGTGCTTGTGTCTGTGTCTAGTGTTTGGCAGTATTTTCCTTTATTCTGAGAACACGAAGAACACCTATGAGAACTCCCAAACCAAAATCAAAATCCCCAAGGACCCCGAAAATTGTTATTACCGGTTAGTTTGTTTTTCGAAAGAAAAAATTAGAGGGAACAGGAGAATTCAAGGCGTTAATAAATTTTTTGCGGTTATCAAAAAACAATAGGGAGTTAGTTTTTTTTATTGGATTCTGTATAGCAACTGAACACTTTTTAAGAACAAATTTGAAAATTTGGAAAAATGAAACCAAATTGAAATTATTCCAAACAAGAATCCAAGGTTGCATGTTTGACCATCATTTGCGAATCCGTGTTGACATCCCTTGTCCATCCTTTCTCCTTTTTCTTGAAGTTAATTTTGGTTTTCATGAATTCTCAATTTTCAATTCTCCAAATTATGATATATCTATGATTCAATACTTTTGAAACAAAAGTTGCTGATCCAAACACGTTTTGCACTAGAAACCGGATGGTTAAGGGGGTGTCACAGCCAATTTCCGTTTAGCCAGAGACGGGCACTTTCGGGAGTAGAGAAAAAAGCAAGTTCTAGTTATAT</canonical>
            <polymorphic>AGAACTCTTCCGCATCCAGGAAGAGGCGGGAAAAAAACCCGGGAGTCTACTAATAAGTCGATGTAATTCGATAGGAGAAGAAAATGCTTCATACTCTTTCCCCCCTATTTTGCCTCCTACTCATCCGTCCACACTTCATTTCTTTTCCTTGTCTTCTCTTTTTTCTATTCAACTTTTTTTTCCAATTTTCTCTGCATCTGACACCGCTGTTCAAATCCAATGTTTTATACATAATTTTTTTTTCCAAATTTTCACCTGCCTTATTTCTCAGATTTTGATTAAAAGACCGGCTCAAAAAAAAAGTTGATAGAGGTGTGAGTGAGAGCCGACCTCTTTTTTTCGAAGTTTTATGGATATTGGGTAACCTTATCACCTGGCTAAAAAAAAGAAAAATGTAGAGGTGCTTGTGTCTGTGTCTAGTGTTTGGCAGTATTTTCCTTTATTCTGAGAACACGAAGAACACCTATGAGAACTCCCAAACCAAAATCAAAATCCCCAARGACCCCGAAAATTGTTATTACCGGTTAGTTTGTTTTTCGAAAGAAAAAATTAGAGGGAACAGGAGAATTCAAGGCGTTAATAAATTTTTTGCGGTTATCAAAAAACAATAGGGAGTTAGTTTTTTTTATTGGATTCTGTATAGCAACTGAACACTTTTTAAGAACAAATTTGAAAATTTGGAAAAATGAAACCAAATTGAAATTATTCCAAACAAGAATCCAAGGTTGCATGTTTGACCATCATTTGCGAATCCGTGTTGACATCCCTTGTCCATCCTTTCTCCTTTTTCTTGAAGTTAATTTTGGTTTTCATGAATTCTCAATTTTCAATTCTCCAAATTATGATATATCTATGATTCAATACTTTTGAAACAAAAGTTGCTGATCCAAACACGTTTTGCACTAGAAACCGGATGGTTAAGGGGGTGTCACAGCCAATTTCCGTTTAGCCAGAGACGGGCACTTTCGGGAGTAGAGAAAAAAGCAAGTTCTAGTTATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>458 280 224 38</canonical_bands>
                <polymorphic_bands>682 280 38</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>496 280 224</canonical_bands>
                <polymorphic_bands>720 280</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCGAAGTTTTATGGATATTG</pcr_primer_p1>
		<pcr_primer_p2>ATTTATTAACGCCTTGAATTCTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTCGAAGTTTTATGGATATTGGGTAACCTTATCACCTGGCTAAAAAAAAGAAAAATGTAGAGGTGCTTGTGTCTGTGTCTAGTGTTTGGCAGTATTTTCCTTTATTCTGAGAACACGAAGAACACCTATGAGAACTCCCAAACCAAAATCAAAATCCCCAAGGACCCCGAAAATTGTTATTACCGGTTAGTTTGTTTTTCGAAAGAAAAAATTAGAGGGAACAGGAGAATTCAAGGCGTTAATAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCGAAGTTTTATGGATATTGGGTAACCTTATCACCTGGCTAAAAAAAAGAAAAATGTAGAGGTGCTTGTGTCTGTGTCTAGTGTTTGGCAGTATTTTCCTTTATTCTGAGAACACGAAGAACACCTATGAGAACTCCCAAACCAAAATCAAAATCCCCAARGACCCCGAAAATTGTTATTACCGGTTAGTTTGTTTTTCGAAAGAAAAAATTAGAGGGAACAGGAGAATTCAAGGCGTTAATAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20508</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1053548</contig_pos>
        <strand>+</strand>
        <context>CTGAACCGCC[A/G]ATAAAATGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATTGATCGATGGGACATTCAGAAGTAGCGAAAAATTTGCTGAACCGCC</left_flank>
        <right_flank>ATAAAATGAGCAATACAGTAGCCCGCGTTACAGTAACCAACAAAAAAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTGGAATTTTTCACTAATTTTCGACACGATTACCAACGATTGTAGTTCCCTTTTTTCGGATTACGATAACTAGAGTTGCGGAAAGTTGCAAAATTTGTAACAACGTTTAAACAATATGTAAAAGATTTGTGAAAAATGTATTCAGATATCCGAAAACCTGCGCTTCGAAATACTCCAACTGTTTTCTAACATAACCTCTCCTAAAATATTAGGAAGATCTAATTTTGACGGACATAATAGTCTGGTCCAAAAAACTGGACCAGTTACAAAACTAAGATTATCGGAACATTAAGGAGATGCGCACGATATGGGAAAAGCAAGGGAAATGAAAAGCAGGAAGACTGTGGAGTGATTTGACGGTCAGAGGCCTAGTGACTCATGTTTTTCCAGAAGGATACAAATGGTTTTTGATCACTGACCTCTATTTTTTTGGAAGCTTCGAAAAAATTATTGATCGATGGGACATTCAGAAGTAGCGAAAAATTTGCTGAACCGCCGATAAAATGAGCAATACAGTAGCCCGCGTTACAGTAACCAACAAAAAAATAAAACTAATCCCTGATAGAACTCACAATAGAATTCAGAGTGCAGAAAGTTTAAAATTTCTATGTTTTCTTATATTTTCGAGGCGCATAAAATTTCCTAATTTTGCTAACACCGTTTTCTGAACTTTGAAAACAATCGAAAATAATGTTTTTCATTGAAAAAAATAAAATGAATCAATCATGACTGGAAATGCCTTAATGAACGATTTGAAAAACCGAGAATAGTGAAATCTAGAAATAAAAATAATATGCGAAAATCGAGAGAACTGAGAAGCAGGAAAAGATAGGAGTGATTTGACAGTCGGCAGCCTAGTGACTCATATTGTTCCAGAACAATTCGAATGGTTTTTGATCACTGATCTCGATGGATGCATTCGTGTCGATTTACGAAGCTCCGTCAAAAAACTGATACTGTAAAAAGCAAATTTAATACATGCGAATTAGGTCGAATGT</canonical>
            <polymorphic>GTCTGGAATTTTTCACTAATTTTCGACACGATTACCAACGATTGTAGTTCCCTTTTTTCGGATTACGATAACTAGAGTTGCGGAAAGTTGCAAAATTTGTAACAACGTTTAAACAATATGTAAAAGATTTGTGAAAAATGTATTCAGATATCCGAAAACCTGCGCTTCGAAATACTCCAACTGTTTTCTAACATAACCTCTCCTAAAATATTAGGAAGATCTAATTTTGACGGACATAATAGTCTGGTCCAAAAAACTGGACCAGTTACAAAACTAAGATTATCGGAACATTAAGGAGATGCGCACGATATGGGAAAAGCAAGGGAAATGAAAAGCAGGAAGACTGTGGAGTGATTTGACGGTCAGAGGCCTAGTGACTCATGTTTTTCCAGAAGGATACAAATGGTTTTTGATCACTGACCTCTATTTTTTTGGAAGCTTCGAAAAAATTATTGATCGATGGGACATTCAGAAGTAGCGAAAAATTTGCTGAACCGCCRATAAAATGAGCAATACAGTAGCCCGCGTTACAGTAACCAACAAAAAAATAAAACTAATCCCTGATAGAACTCACAATAGAATTCAGAGTGCAGAAAGTTTAAAATTTCTATGTTTTCTTATATTTTCGAGGCGCATAAAATTTCCTAATTTTGCTAACACCGTTTTCTGAACTTTGAAAACAATCGAAAATAATGTTTTTCATTGAAAAAAATAAAATGAATCAATCATGACTGGAAATGCCTTAATGAACGATTTGAAAAACCGAGAATAGTGAAATCTAGAAATAAAAATAATATGCGAAAATCGAGAGAACTGAGAAGCAGGAAAAGATAGGAGTGATTTGACAGTCGGCAGCCTAGTGACTCATATTGTTCCAGAACAATTCGAATGGTTTTTGATCACTGATCTCGATGGATGCATTCGTGTCGATTTACGAAGCTCCGTCAAAAAACTGATACTGTAAAAAGCAAATTTAATACATGCGAATTAGGTCGAATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCCAGAAGGATACAAATG</pcr_primer_p1>
		<pcr_primer_p2>GCCTCGAAAATATAAGAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCCAGAAGGATACAAATGGTTTTTGATCACTGACCTCTATTTTTTTGGAAGCTTCGAAAAAATTATTGATCGATGGGACATTCAGAAGTAGCGAAAAATTTGCTGAACCGCCGATAAAATGAGCAATACAGTAGCCCGCGTTACAGTAACCAACAAAAAAATAAAACTAATCCCTGATAGAACTCACAATAGAATTCAGAGTGCAGAAAGTTTAAAATTTCTATGTTTTCTTATATTTTCGAGGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCCAGAAGGATACAAATGGTTTTTGATCACTGACCTCTATTTTTTTGGAAGCTTCGAAAAAATTATTGATCGATGGGACATTCAGAAGTAGCGAAAAATTTGCTGAACCGCCRATAAAATGAGCAATACAGTAGCCCGCGTTACAGTAACCAACAAAAAAATAAAACTAATCCCTGATAGAACTCACAATAGAATTCAGAGTGCAGAAAGTTTAAAATTTCTATGTTTTCTTATATTTTCGAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20509</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1053593</contig_pos>
        <strand>+</strand>
        <context>AACCAACAAA[A/G]AAATAAAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGCCGATAAAATGAGCAATACAGTAGCCCGCGTTACAGTAACCAACAAA</left_flank>
        <right_flank>AAATAAAACTAATCCCTGATAGAACTCACAATAGAATTCAGAGTGCAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTCCCTTTTTTCGGATTACGATAACTAGAGTTGCGGAAAGTTGCAAAATTTGTAACAACGTTTAAACAATATGTAAAAGATTTGTGAAAAATGTATTCAGATATCCGAAAACCTGCGCTTCGAAATACTCCAACTGTTTTCTAACATAACCTCTCCTAAAATATTAGGAAGATCTAATTTTGACGGACATAATAGTCTGGTCCAAAAAACTGGACCAGTTACAAAACTAAGATTATCGGAACATTAAGGAGATGCGCACGATATGGGAAAAGCAAGGGAAATGAAAAGCAGGAAGACTGTGGAGTGATTTGACGGTCAGAGGCCTAGTGACTCATGTTTTTCCAGAAGGATACAAATGGTTTTTGATCACTGACCTCTATTTTTTTGGAAGCTTCGAAAAAATTATTGATCGATGGGACATTCAGAAGTAGCGAAAAATTTGCTGAACCGCCGATAAAATGAGCAATACAGTAGCCCGCGTTACAGTAACCAACAAAAAAATAAAACTAATCCCTGATAGAACTCACAATAGAATTCAGAGTGCAGAAAGTTTAAAATTTCTATGTTTTCTTATATTTTCGAGGCGCATAAAATTTCCTAATTTTGCTAACACCGTTTTCTGAACTTTGAAAACAATCGAAAATAATGTTTTTCATTGAAAAAAATAAAATGAATCAATCATGACTGGAAATGCCTTAATGAACGATTTGAAAAACCGAGAATAGTGAAATCTAGAAATAAAAATAATATGCGAAAATCGAGAGAACTGAGAAGCAGGAAAAGATAGGAGTGATTTGACAGTCGGCAGCCTAGTGACTCATATTGTTCCAGAACAATTCGAATGGTTTTTGATCACTGATCTCGATGGATGCATTCGTGTCGATTTACGAAGCTCCGTCAAAAAACTGATACTGTAAAAAGCAAATTTAATACATGCGAATTAGGTCGAATGTGTTCTGAACCAAAGTTAGAATTTTTCGTAAAATGTGATAGCTAGC</canonical>
            <polymorphic>AGTTCCCTTTTTTCGGATTACGATAACTAGAGTTGCGGAAAGTTGCAAAATTTGTAACAACGTTTAAACAATATGTAAAAGATTTGTGAAAAATGTATTCAGATATCCGAAAACCTGCGCTTCGAAATACTCCAACTGTTTTCTAACATAACCTCTCCTAAAATATTAGGAAGATCTAATTTTGACGGACATAATAGTCTGGTCCAAAAAACTGGACCAGTTACAAAACTAAGATTATCGGAACATTAAGGAGATGCGCACGATATGGGAAAAGCAAGGGAAATGAAAAGCAGGAAGACTGTGGAGTGATTTGACGGTCAGAGGCCTAGTGACTCATGTTTTTCCAGAAGGATACAAATGGTTTTTGATCACTGACCTCTATTTTTTTGGAAGCTTCGAAAAAATTATTGATCGATGGGACATTCAGAAGTAGCGAAAAATTTGCTGAACCGCCGATAAAATGAGCAATACAGTAGCCCGCGTTACAGTAACCAACAAARAAATAAAACTAATCCCTGATAGAACTCACAATAGAATTCAGAGTGCAGAAAGTTTAAAATTTCTATGTTTTCTTATATTTTCGAGGCGCATAAAATTTCCTAATTTTGCTAACACCGTTTTCTGAACTTTGAAAACAATCGAAAATAATGTTTTTCATTGAAAAAAATAAAATGAATCAATCATGACTGGAAATGCCTTAATGAACGATTTGAAAAACCGAGAATAGTGAAATCTAGAAATAAAAATAATATGCGAAAATCGAGAGAACTGAGAAGCAGGAAAAGATAGGAGTGATTTGACAGTCGGCAGCCTAGTGACTCATATTGTTCCAGAACAATTCGAATGGTTTTTGATCACTGATCTCGATGGATGCATTCGTGTCGATTTACGAAGCTCCGTCAAAAAACTGATACTGTAAAAAGCAAATTTAATACATGCGAATTAGGTCGAATGTGTTCTGAACCAAAGTTAGAATTTTTCGTAAAATGTGATAGCTAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCCAGAAGGATACAAATG</pcr_primer_p1>
		<pcr_primer_p2>GCCTCGAAAATATAAGAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCCAGAAGGATACAAATGGTTTTTGATCACTGACCTCTATTTTTTTGGAAGCTTCGAAAAAATTATTGATCGATGGGACATTCAGAAGTAGCGAAAAATTTGCTGAACCGCCGATAAAATGAGCAATACAGTAGCCCGCGTTACAGTAACCAACAAAAAAATAAAACTAATCCCTGATAGAACTCACAATAGAATTCAGAGTGCAGAAAGTTTAAAATTTCTATGTTTTCTTATATTTTCGAGGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCCAGAAGGATACAAATGGTTTTTGATCACTGACCTCTATTTTTTTGGAAGCTTCGAAAAAATTATTGATCGATGGGACATTCAGAAGTAGCGAAAAATTTGCTGAACCGCCGATAAAATGAGCAATACAGTAGCCCGCGTTACAGTAACCAACAAARAAATAAAACTAATCCCTGATAGAACTCACAATAGAATTCAGAGTGCAGAAAGTTTAAAATTTCTATGTTTTCTTATATTTTCGAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20510</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1053607</contig_pos>
        <strand>+</strand>
        <context>TAAAACTAAT[C/T]CCTGATAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCAATACAGTAGCCCGCGTTACAGTAACCAACAAAAAAATAAAACTAAT</left_flank>
        <right_flank>CCTGATAGAACTCACAATAGAATTCAGAGTGCAGAAAGTTTAAAATTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATTACGATAACTAGAGTTGCGGAAAGTTGCAAAATTTGTAACAACGTTTAAACAATATGTAAAAGATTTGTGAAAAATGTATTCAGATATCCGAAAACCTGCGCTTCGAAATACTCCAACTGTTTTCTAACATAACCTCTCCTAAAATATTAGGAAGATCTAATTTTGACGGACATAATAGTCTGGTCCAAAAAACTGGACCAGTTACAAAACTAAGATTATCGGAACATTAAGGAGATGCGCACGATATGGGAAAAGCAAGGGAAATGAAAAGCAGGAAGACTGTGGAGTGATTTGACGGTCAGAGGCCTAGTGACTCATGTTTTTCCAGAAGGATACAAATGGTTTTTGATCACTGACCTCTATTTTTTTGGAAGCTTCGAAAAAATTATTGATCGATGGGACATTCAGAAGTAGCGAAAAATTTGCTGAACCGCCGATAAAATGAGCAATACAGTAGCCCGCGTTACAGTAACCAACAAAAAAATAAAACTAATCCCTGATAGAACTCACAATAGAATTCAGAGTGCAGAAAGTTTAAAATTTCTATGTTTTCTTATATTTTCGAGGCGCATAAAATTTCCTAATTTTGCTAACACCGTTTTCTGAACTTTGAAAACAATCGAAAATAATGTTTTTCATTGAAAAAAATAAAATGAATCAATCATGACTGGAAATGCCTTAATGAACGATTTGAAAAACCGAGAATAGTGAAATCTAGAAATAAAAATAATATGCGAAAATCGAGAGAACTGAGAAGCAGGAAAAGATAGGAGTGATTTGACAGTCGGCAGCCTAGTGACTCATATTGTTCCAGAACAATTCGAATGGTTTTTGATCACTGATCTCGATGGATGCATTCGTGTCGATTTACGAAGCTCCGTCAAAAAACTGATACTGTAAAAAGCAAATTTAATACATGCGAATTAGGTCGAATGTGTTCTGAACCAAAGTTAGAATTTTTCGTAAAATGTGATAGCTAGCATCTCTAGAATCCT</canonical>
            <polymorphic>GGATTACGATAACTAGAGTTGCGGAAAGTTGCAAAATTTGTAACAACGTTTAAACAATATGTAAAAGATTTGTGAAAAATGTATTCAGATATCCGAAAACCTGCGCTTCGAAATACTCCAACTGTTTTCTAACATAACCTCTCCTAAAATATTAGGAAGATCTAATTTTGACGGACATAATAGTCTGGTCCAAAAAACTGGACCAGTTACAAAACTAAGATTATCGGAACATTAAGGAGATGCGCACGATATGGGAAAAGCAAGGGAAATGAAAAGCAGGAAGACTGTGGAGTGATTTGACGGTCAGAGGCCTAGTGACTCATGTTTTTCCAGAAGGATACAAATGGTTTTTGATCACTGACCTCTATTTTTTTGGAAGCTTCGAAAAAATTATTGATCGATGGGACATTCAGAAGTAGCGAAAAATTTGCTGAACCGCCGATAAAATGAGCAATACAGTAGCCCGCGTTACAGTAACCAACAAAAAAATAAAACTAATYCCTGATAGAACTCACAATAGAATTCAGAGTGCAGAAAGTTTAAAATTTCTATGTTTTCTTATATTTTCGAGGCGCATAAAATTTCCTAATTTTGCTAACACCGTTTTCTGAACTTTGAAAACAATCGAAAATAATGTTTTTCATTGAAAAAAATAAAATGAATCAATCATGACTGGAAATGCCTTAATGAACGATTTGAAAAACCGAGAATAGTGAAATCTAGAAATAAAAATAATATGCGAAAATCGAGAGAACTGAGAAGCAGGAAAAGATAGGAGTGATTTGACAGTCGGCAGCCTAGTGACTCATATTGTTCCAGAACAATTCGAATGGTTTTTGATCACTGATCTCGATGGATGCATTCGTGTCGATTTACGAAGCTCCGTCAAAAAACTGATACTGTAAAAAGCAAATTTAATACATGCGAATTAGGTCGAATGTGTTCTGAACCAAAGTTAGAATTTTTCGTAAAATGTGATAGCTAGCATCTCTAGAATCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCCAGAAGGATACAAATG</pcr_primer_p1>
		<pcr_primer_p2>GCCTCGAAAATATAAGAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCCAGAAGGATACAAATGGTTTTTGATCACTGACCTCTATTTTTTTGGAAGCTTCGAAAAAATTATTGATCGATGGGACATTCAGAAGTAGCGAAAAATTTGCTGAACCGCCGATAAAATGAGCAATACAGTAGCCCGCGTTACAGTAACCAACAAAAAAATAAAACTAATCCCTGATAGAACTCACAATAGAATTCAGAGTGCAGAAAGTTTAAAATTTCTATGTTTTCTTATATTTTCGAGGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCCAGAAGGATACAAATGGTTTTTGATCACTGACCTCTATTTTTTTGGAAGCTTCGAAAAAATTATTGATCGATGGGACATTCAGAAGTAGCGAAAAATTTGCTGAACCGCCGATAAAATGAGCAATACAGTAGCCCGCGTTACAGTAACCAACAAAAAAATAAAACTAATYCCTGATAGAACTCACAATAGAATTCAGAGTGCAGAAAGTTTAAAATTTCTATGTTTTCTTATATTTTCGAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20512</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1053706</contig_pos>
        <strand>+</strand>
        <context>ATTTTGCTAA[A/C]ACCGTTTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTATGTTTTCTTATATTTTCGAGGCGCATAAAATTTCCTAATTTTGCTAA</left_flank>
        <right_flank>ACCGTTTTCTGAACTTTGAAAACAATCGAAAATAATGTTTTTCATTGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTGCGCTTCGAAATACTCCAACTGTTTTCTAACATAACCTCTCCTAAAATATTAGGAAGATCTAATTTTGACGGACATAATAGTCTGGTCCAAAAAACTGGACCAGTTACAAAACTAAGATTATCGGAACATTAAGGAGATGCGCACGATATGGGAAAAGCAAGGGAAATGAAAAGCAGGAAGACTGTGGAGTGATTTGACGGTCAGAGGCCTAGTGACTCATGTTTTTCCAGAAGGATACAAATGGTTTTTGATCACTGACCTCTATTTTTTTGGAAGCTTCGAAAAAATTATTGATCGATGGGACATTCAGAAGTAGCGAAAAATTTGCTGAACCGCCGATAAAATGAGCAATACAGTAGCCCGCGTTACAGTAACCAACAAAAAAATAAAACTAATCCCTGATAGAACTCACAATAGAATTCAGAGTGCAGAAAGTTTAAAATTTCTATGTTTTCTTATATTTTCGAGGCGCATAAAATTTCCTAATTTTGCTAACACCGTTTTCTGAACTTTGAAAACAATCGAAAATAATGTTTTTCATTGAAAAAAATAAAATGAATCAATCATGACTGGAAATGCCTTAATGAACGATTTGAAAAACCGAGAATAGTGAAATCTAGAAATAAAAATAATATGCGAAAATCGAGAGAACTGAGAAGCAGGAAAAGATAGGAGTGATTTGACAGTCGGCAGCCTAGTGACTCATATTGTTCCAGAACAATTCGAATGGTTTTTGATCACTGATCTCGATGGATGCATTCGTGTCGATTTACGAAGCTCCGTCAAAAAACTGATACTGTAAAAAGCAAATTTAATACATGCGAATTAGGTCGAATGTGTTCTGAACCAAAGTTAGAATTTTTCGTAAAATGTGATAGCTAGCATCTCTAGAATCCTGTTTTGAATTGAATGTATTCTTCCAAATGTTCAGGTTTTAATTCTCATTTTGACATTTTTCCATCTGAATATTCGGTTTATCCTTGTGGTGGAGTTTTG</canonical>
            <polymorphic>CCTGCGCTTCGAAATACTCCAACTGTTTTCTAACATAACCTCTCCTAAAATATTAGGAAGATCTAATTTTGACGGACATAATAGTCTGGTCCAAAAAACTGGACCAGTTACAAAACTAAGATTATCGGAACATTAAGGAGATGCGCACGATATGGGAAAAGCAAGGGAAATGAAAAGCAGGAAGACTGTGGAGTGATTTGACGGTCAGAGGCCTAGTGACTCATGTTTTTCCAGAAGGATACAAATGGTTTTTGATCACTGACCTCTATTTTTTTGGAAGCTTCGAAAAAATTATTGATCGATGGGACATTCAGAAGTAGCGAAAAATTTGCTGAACCGCCGATAAAATGAGCAATACAGTAGCCCGCGTTACAGTAACCAACAAAAAAATAAAACTAATCCCTGATAGAACTCACAATAGAATTCAGAGTGCAGAAAGTTTAAAATTTCTATGTTTTCTTATATTTTCGAGGCGCATAAAATTTCCTAATTTTGCTAAMACCGTTTTCTGAACTTTGAAAACAATCGAAAATAATGTTTTTCATTGAAAAAAATAAAATGAATCAATCATGACTGGAAATGCCTTAATGAACGATTTGAAAAACCGAGAATAGTGAAATCTAGAAATAAAAATAATATGCGAAAATCGAGAGAACTGAGAAGCAGGAAAAGATAGGAGTGATTTGACAGTCGGCAGCCTAGTGACTCATATTGTTCCAGAACAATTCGAATGGTTTTTGATCACTGATCTCGATGGATGCATTCGTGTCGATTTACGAAGCTCCGTCAAAAAACTGATACTGTAAAAAGCAAATTTAATACATGCGAATTAGGTCGAATGTGTTCTGAACCAAAGTTAGAATTTTTCGTAAAATGTGATAGCTAGCATCTCTAGAATCCTGTTTTGAATTGAATGTATTCTTCCAAATGTTCAGGTTTTAATTCTCATTTTGACATTTTTCCATCTGAATATTCGGTTTATCCTTGTGGTGGAGTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>157 147 115 111 75 69 65 43 40 40 35 24 23 23 17 8 5 3</canonical_bands>
                <polymorphic_bands>184 157 147 111 75 65 43 40 40 35 24 23 23 17 8 5 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGCGAAAAATTTGCTGAAC</pcr_primer_p1>
		<pcr_primer_p2>CAGTCATGATTGATTCATTTTATT</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>TAGCGAAAAATTTGCTGAACCGCCGATAAAATGAGCAATACAGTAGCCCGCGTTACAGTAACCAACAAAAAAATAAAACTAATCCCTGATAGAACTCACAATAGAATTCAGAGTGCAGAAAGTTTAAAATTTCTATGTTTTCTTATATTTTCGAGGCGCATAAAATTTCCTAATTTTGCTAACACCGTTTTCTGAACTTTGAAAACAATCGAAAATAATGTTTTTCATTGAAAAAAATAAAATGAATCAATCATGACTG</canonical_amplicon>
		<polymorphic_amplicon>TAGCGAAAAATTTGCTGAACCGCCGATAAAATGAGCAATACAGTAGCCCGCGTTACAGTAACCAACAAAAAAATAAAACTAATCCCTGATAGAACTCACAATAGAATTCAGAGTGCAGAAAGTTTAAAATTTCTATGTTTTCTTATATTTTCGAGGCGCATAAAATTTCCTAATTTTGCTAAMACCGTTTTCTGAACTTTGAAAACAATCGAAAATAATGTTTTTCATTGAAAAAAATAAAATGAATCAATCATGACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20513</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1053814</contig_pos>
        <strand>+</strand>
        <context>TGAAAAACCG[A/C]GAATAGTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATGAATCAATCATGACTGGAAATGCCTTAATGAACGATTTGAAAAACCG</left_flank>
        <right_flank>GAATAGTGAAATCTAGAAATAAAAATAATATGCGAAAATCGAGAGAACTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACAAAACTAAGATTATCGGAACATTAAGGAGATGCGCACGATATGGGAAAAGCAAGGGAAATGAAAAGCAGGAAGACTGTGGAGTGATTTGACGGTCAGAGGCCTAGTGACTCATGTTTTTCCAGAAGGATACAAATGGTTTTTGATCACTGACCTCTATTTTTTTGGAAGCTTCGAAAAAATTATTGATCGATGGGACATTCAGAAGTAGCGAAAAATTTGCTGAACCGCCGATAAAATGAGCAATACAGTAGCCCGCGTTACAGTAACCAACAAAAAAATAAAACTAATCCCTGATAGAACTCACAATAGAATTCAGAGTGCAGAAAGTTTAAAATTTCTATGTTTTCTTATATTTTCGAGGCGCATAAAATTTCCTAATTTTGCTAACACCGTTTTCTGAACTTTGAAAACAATCGAAAATAATGTTTTTCATTGAAAAAAATAAAATGAATCAATCATGACTGGAAATGCCTTAATGAACGATTTGAAAAACCGAGAATAGTGAAATCTAGAAATAAAAATAATATGCGAAAATCGAGAGAACTGAGAAGCAGGAAAAGATAGGAGTGATTTGACAGTCGGCAGCCTAGTGACTCATATTGTTCCAGAACAATTCGAATGGTTTTTGATCACTGATCTCGATGGATGCATTCGTGTCGATTTACGAAGCTCCGTCAAAAAACTGATACTGTAAAAAGCAAATTTAATACATGCGAATTAGGTCGAATGTGTTCTGAACCAAAGTTAGAATTTTTCGTAAAATGTGATAGCTAGCATCTCTAGAATCCTGTTTTGAATTGAATGTATTCTTCCAAATGTTCAGGTTTTAATTCTCATTTTGACATTTTTCCATCTGAATATTCGGTTTATCCTTGTGGTGGAGTTTTGGTCTTGATAAGTTCTACGAAAGAATAAAACGAGTATTTTTTTGGAGCGAAATCCGATGTTCCTTGTGCAAAATATTCTGAAAAATTCTCAACAGTTAGTTTCTCAGCA</canonical>
            <polymorphic>TACAAAACTAAGATTATCGGAACATTAAGGAGATGCGCACGATATGGGAAAAGCAAGGGAAATGAAAAGCAGGAAGACTGTGGAGTGATTTGACGGTCAGAGGCCTAGTGACTCATGTTTTTCCAGAAGGATACAAATGGTTTTTGATCACTGACCTCTATTTTTTTGGAAGCTTCGAAAAAATTATTGATCGATGGGACATTCAGAAGTAGCGAAAAATTTGCTGAACCGCCGATAAAATGAGCAATACAGTAGCCCGCGTTACAGTAACCAACAAAAAAATAAAACTAATCCCTGATAGAACTCACAATAGAATTCAGAGTGCAGAAAGTTTAAAATTTCTATGTTTTCTTATATTTTCGAGGCGCATAAAATTTCCTAATTTTGCTAACACCGTTTTCTGAACTTTGAAAACAATCGAAAATAATGTTTTTCATTGAAAAAAATAAAATGAATCAATCATGACTGGAAATGCCTTAATGAACGATTTGAAAAACCGMGAATAGTGAAATCTAGAAATAAAAATAATATGCGAAAATCGAGAGAACTGAGAAGCAGGAAAAGATAGGAGTGATTTGACAGTCGGCAGCCTAGTGACTCATATTGTTCCAGAACAATTCGAATGGTTTTTGATCACTGATCTCGATGGATGCATTCGTGTCGATTTACGAAGCTCCGTCAAAAAACTGATACTGTAAAAAGCAAATTTAATACATGCGAATTAGGTCGAATGTGTTCTGAACCAAAGTTAGAATTTTTCGTAAAATGTGATAGCTAGCATCTCTAGAATCCTGTTTTGAATTGAATGTATTCTTCCAAATGTTCAGGTTTTAATTCTCATTTTGACATTTTTCCATCTGAATATTCGGTTTATCCTTGTGGTGGAGTTTTGGTCTTGATAAGTTCTACGAAAGAATAAAACGAGTATTTTTTTGGAGCGAAATCCGATGTTCCTTGTGCAAAATATTCTGAAAAATTCTCAACAGTTAGTTTCTCAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCATAAAATTTCCTAATTTTGCTA</pcr_primer_p1>
		<pcr_primer_p2>CTGGAACAATATGAGTCACTAGG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GCATAAAATTTCCTAATTTTGCTAACACCGTTTTCTGAACTTTGAAAACAATCGAAAATAATGTTTTTCATTGAAAAAAATAAAATGAATCAATCATGACTGGAAATGCCTTAATGAACGATTTGAAAAACCGAGAATAGTGAAATCTAGAAATAAAAATAATATGCGAAAATCGAGAGAACTGAGAAGCAGGAAAAGATAGGAGTGATTTGACAGTCGGCAGCCTAGTGACTCATATTGTTCCAG</canonical_amplicon>
		<polymorphic_amplicon>GCATAAAATTTCCTAATTTTGCTAACACCGTTTTCTGAACTTTGAAAACAATCGAAAATAATGTTTTTCATTGAAAAAAATAAAATGAATCAATCATGACTGGAAATGCCTTAATGAACGATTTGAAAAACCGMGAATAGTGAAATCTAGAAATAAAAATAATATGCGAAAATCGAGAGAACTGAGAAGCAGGAAAAGATAGGAGTGATTTGACAGTCGGCAGCCTAGTGACTCATATTGTTCCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20514</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1056979</contig_pos>
        <strand>+</strand>
        <context>CCTCTTTTCT[C/T]TTTCGGGGGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTTTTTTCCTCTTTTCT</left_flank>
        <right_flank>TTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAAGAGAAGAGTAGTGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGCTCATATCCTCCACGAGAATCCAATCGGTGGACAGCATTGCAAAGACAGCCTGAAAAAATCTTATATTTGATTTTCTCAAAGATTTTAGCTTACCAAGATTGCTGCAACAGTGTGGAACACGGTTGCCGGAATGTTGGCCTCGCGAAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGAAACGATTAAACGAAAGGATTTTGCTAGCCGAAAAAAAGTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATTGACAAAAATCTGCCGCCGGCTCCGGGGGTCCGCGCGAGCCGGAGGGAAATTGAGAAAAGAGAATCAATAGCGAAAGGCCTCCCGATGAGAGGAAGCGCAGCTTTCCGAAACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACGATGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTTTTTTCCTCTTTTCTCTTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAAGAGAAGAGTAGTGAAAGTTGAAAAACACGGAACAACACGGAACAACACACTGGAAACTTTTTACTGACTGCCCTTTTCTGAGAAAATGTTTTGACGAGAGAGTGAAAACGAAAATCCGAGTAGGCATAAGTGGGAGGGTCTCAAAAAGAAGACATTAAATTGATACACCCGTTTAGAAAGTGAAGATACTGGGATACCAATTGATCGAGAATGAAAAAGAAAATGAAAAAATCGAAACAGATGGAAGTACGCACGACCTTGACCAGTTAATTGGGGGAAGAAAAATCCAGTTTGTTTTCCAACAGAATGTATCGGTCTACCTATACATTTATCAAATGATAATTGGTTCAATAATGGCTATTCTGAAGACGATGTGATTTATATCTTATCTAATTGACTGATAGTGTATGCAAGACATTTTGATTAGAACAATATTAGATGACCAGTCTGAAGCCATATTCAAAT</canonical>
            <polymorphic>GTGCTCATATCCTCCACGAGAATCCAATCGGTGGACAGCATTGCAAAGACAGCCTGAAAAAATCTTATATTTGATTTTCTCAAAGATTTTAGCTTACCAAGATTGCTGCAACAGTGTGGAACACGGTTGCCGGAATGTTGGCCTCGCGAAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGAAACGATTAAACGAAAGGATTTTGCTAGCCGAAAAAAAGTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATTGACAAAAATCTGCCGCCGGCTCCGGGGGTCCGCGCGAGCCGGAGGGAAATTGAGAAAAGAGAATCAATAGCGAAAGGCCTCCCGATGAGAGGAAGCGCAGCTTTCCGAAACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACGATGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTTTTTTCCTCTTTTCTYTTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAAGAGAAGAGTAGTGAAAGTTGAAAAACACGGAACAACACGGAACAACACACTGGAAACTTTTTACTGACTGCCCTTTTCTGAGAAAATGTTTTGACGAGAGAGTGAAAACGAAAATCCGAGTAGGCATAAGTGGGAGGGTCTCAAAAAGAAGACATTAAATTGATACACCCGTTTAGAAAGTGAAGATACTGGGATACCAATTGATCGAGAATGAAAAAGAAAATGAAAAAATCGAAACAGATGGAAGTACGCACGACCTTGACCAGTTAATTGGGGGAAGAAAAATCCAGTTTGTTTTCCAACAGAATGTATCGGTCTACCTATACATTTATCAAATGATAATTGGTTCAATAATGGCTATTCTGAAGACGATGTGATTTATATCTTATCTAATTGACTGATAGTGTATGCAAGACATTTTGATTAGAACAATATTAGATGACCAGTCTGAAGCCATATTCAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAATTGAGAAAAGAGAATCA</pcr_primer_p1>
		<pcr_primer_p2>CGTGTTTTTCAACTTTCACTACT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>GGAAATTGAGAAAAGAGAATCAATAGCGAAAGGCCTCCCGATGAGAGGAAGCGCAGCTTTCCGAAACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACGATGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTTTTTTCCTCTTTTCTCTTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAAGAGAAGAGTAGTGAAAGTTGAAAAACACG</canonical_amplicon>
		<polymorphic_amplicon>GGAAATTGAGAAAAGAGAATCAATAGCGAAAGGCCTCCCGATGAGAGGAAGCGCAGCTTTCCGAAACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACGATGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTTTTTTCCTCTTTTCTYTTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAAGAGAAGAGTAGTGAAAGTTGAAAAACACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20515</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1056968</contig_pos>
        <strand>+</strand>
        <context>CTCTTTKTTT[C/T]CCTCTTTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCACTACGATGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTTTTT</left_flank>
        <right_flank>CCTCTTTTCTCTTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAAGAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCCATTTCTAGTGCTCATATCCTCCACGAGAATCCAATCGGTGGACAGCATTGCAAAGACAGCCTGAAAAAATCTTATATTTGATTTTCTCAAAGATTTTAGCTTACCAAGATTGCTGCAACAGTGTGGAACACGGTTGCCGGAATGTTGGCCTCGCGAAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGAAACGATTAAACGAAAGGATTTTGCTAGCCGAAAAAAAGTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATTGACAAAAATCTGCCGCCGGCTCCGGGGGTCCGCGCGAGCCGGAGGGAAATTGAGAAAAGAGAATCAATAGCGAAAGGCCTCCCGATGAGAGGAAGCGCAGCTTTCCGAAACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACGATGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTTTTTTCCTCTTTTCTCTTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAAGAGAAGAGTAGTGAAAGTTGAAAAACACGGAACAACACGGAACAACACACTGGAAACTTTTTACTGACTGCCCTTTTCTGAGAAAATGTTTTGACGAGAGAGTGAAAACGAAAATCCGAGTAGGCATAAGTGGGAGGGTCTCAAAAAGAAGACATTAAATTGATACACCCGTTTAGAAAGTGAAGATACTGGGATACCAATTGATCGAGAATGAAAAAGAAAATGAAAAAATCGAAACAGATGGAAGTACGCACGACCTTGACCAGTTAATTGGGGGAAGAAAAATCCAGTTTGTTTTCCAACAGAATGTATCGGTCTACCTATACATTTATCAAATGATAATTGGTTCAATAATGGCTATTCTGAAGACGATGTGATTTATATCTTATCTAATTGACTGATAGTGTATGCAAGACATTTTGATTAGAACAATATTAGATGACCAGTCTGAAGC</canonical>
            <polymorphic>ACCCATTTCTAGTGCTCATATCCTCCACGAGAATCCAATCGGTGGACAGCATTGCAAAGACAGCCTGAAAAAATCTTATATTTGATTTTCTCAAAGATTTTAGCTTACCAAGATTGCTGCAACAGTGTGGAACACGGTTGCCGGAATGTTGGCCTCGCGAAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGAAACGATTAAACGAAAGGATTTTGCTAGCCGAAAAAAAGTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATTGACAAAAATCTGCCGCCGGCTCCGGGGGTCCGCGCGAGCCGGAGGGAAATTGAGAAAAGAGAATCAATAGCGAAAGGCCTCCCGATGAGAGGAAGCGCAGCTTTCCGAAACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACGATGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTTTTTYCCTCTTTTCTCTTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAAGAGAAGAGTAGTGAAAGTTGAAAAACACGGAACAACACGGAACAACACACTGGAAACTTTTTACTGACTGCCCTTTTCTGAGAAAATGTTTTGACGAGAGAGTGAAAACGAAAATCCGAGTAGGCATAAGTGGGAGGGTCTCAAAAAGAAGACATTAAATTGATACACCCGTTTAGAAAGTGAAGATACTGGGATACCAATTGATCGAGAATGAAAAAGAAAATGAAAAAATCGAAACAGATGGAAGTACGCACGACCTTGACCAGTTAATTGGGGGAAGAAAAATCCAGTTTGTTTTCCAACAGAATGTATCGGTCTACCTATACATTTATCAAATGATAATTGGTTCAATAATGGCTATTCTGAAGACGATGTGATTTATATCTTATCTAATTGACTGATAGTGTATGCAAGACATTTTGATTAGAACAATATTAGATGACCAGTCTGAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAATTGAGAAAAGAGAATCA</pcr_primer_p1>
		<pcr_primer_p2>CGTGTTTTTCAACTTTCACTACT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>GGAAATTGAGAAAAGAGAATCAATAGCGAAAGGCCTCCCGATGAGAGGAAGCGCAGCTTTCCGAAACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACGATGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTTTTTTCCTCTTTTCTCTTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAAGAGAAGAGTAGTGAAAGTTGAAAAACACG</canonical_amplicon>
		<polymorphic_amplicon>GGAAATTGAGAAAAGAGAATCAATAGCGAAAGGCCTCCCGATGAGAGGAAGCGCAGCTTTCCGAAACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACGATGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTTTTTYCCTCTTTTCTCTTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAAGAGAAGAGTAGTGAAAGTTGAAAAACACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20516</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1056964</contig_pos>
        <strand>+</strand>
        <context>CTATCTCTTT[G/T]TTTYCCTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCAGGCACTACGATGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTT</left_flank>
        <right_flank>TTTTCCTCTTTTCTCTTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGACCCATTTCTAGTGCTCATATCCTCCACGAGAATCCAATCGGTGGACAGCATTGCAAAGACAGCCTGAAAAAATCTTATATTTGATTTTCTCAAAGATTTTAGCTTACCAAGATTGCTGCAACAGTGTGGAACACGGTTGCCGGAATGTTGGCCTCGCGAAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGAAACGATTAAACGAAAGGATTTTGCTAGCCGAAAAAAAGTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATTGACAAAAATCTGCCGCCGGCTCCGGGGGTCCGCGCGAGCCGGAGGGAAATTGAGAAAAGAGAATCAATAGCGAAAGGCCTCCCGATGAGAGGAAGCGCAGCTTTCCGAAACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACGATGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTTTTTTCCTCTTTTCTCTTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAAGAGAAGAGTAGTGAAAGTTGAAAAACACGGAACAACACGGAACAACACACTGGAAACTTTTTACTGACTGCCCTTTTCTGAGAAAATGTTTTGACGAGAGAGTGAAAACGAAAATCCGAGTAGGCATAAGTGGGAGGGTCTCAAAAAGAAGACATTAAATTGATACACCCGTTTAGAAAGTGAAGATACTGGGATACCAATTGATCGAGAATGAAAAAGAAAATGAAAAAATCGAAACAGATGGAAGTACGCACGACCTTGACCAGTTAATTGGGGGAAGAAAAATCCAGTTTGTTTTCCAACAGAATGTATCGGTCTACCTATACATTTATCAAATGATAATTGGTTCAATAATGGCTATTCTGAAGACGATGTGATTTATATCTTATCTAATTGACTGATAGTGTATGCAAGACATTTTGATTAGAACAATATTAGATGACCAGTCTG</canonical>
            <polymorphic>ATTGACCCATTTCTAGTGCTCATATCCTCCACGAGAATCCAATCGGTGGACAGCATTGCAAAGACAGCCTGAAAAAATCTTATATTTGATTTTCTCAAAGATTTTAGCTTACCAAGATTGCTGCAACAGTGTGGAACACGGTTGCCGGAATGTTGGCCTCGCGAAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGAAACGATTAAACGAAAGGATTTTGCTAGCCGAAAAAAAGTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATTGACAAAAATCTGCCGCCGGCTCCGGGGGTCCGCGCGAGCCGGAGGGAAATTGAGAAAAGAGAATCAATAGCGAAAGGCCTCCCGATGAGAGGAAGCGCAGCTTTCCGAAACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACGATGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTKTTTTCCTCTTTTCTCTTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAAGAGAAGAGTAGTGAAAGTTGAAAAACACGGAACAACACGGAACAACACACTGGAAACTTTTTACTGACTGCCCTTTTCTGAGAAAATGTTTTGACGAGAGAGTGAAAACGAAAATCCGAGTAGGCATAAGTGGGAGGGTCTCAAAAAGAAGACATTAAATTGATACACCCGTTTAGAAAGTGAAGATACTGGGATACCAATTGATCGAGAATGAAAAAGAAAATGAAAAAATCGAAACAGATGGAAGTACGCACGACCTTGACCAGTTAATTGGGGGAAGAAAAATCCAGTTTGTTTTCCAACAGAATGTATCGGTCTACCTATACATTTATCAAATGATAATTGGTTCAATAATGGCTATTCTGAAGACGATGTGATTTATATCTTATCTAATTGACTGATAGTGTATGCAAGACATTTTGATTAGAACAATATTAGATGACCAGTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAATTGAGAAAAGAGAATCA</pcr_primer_p1>
		<pcr_primer_p2>CGTGTTTTTCAACTTTCACTACT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>GGAAATTGAGAAAAGAGAATCAATAGCGAAAGGCCTCCCGATGAGAGGAAGCGCAGCTTTCCGAAACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACGATGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTTTTTTCCTCTTTTCTCTTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAAGAGAAGAGTAGTGAAAGTTGAAAAACACG</canonical_amplicon>
		<polymorphic_amplicon>GGAAATTGAGAAAAGAGAATCAATAGCGAAAGGCCTCCCGATGAGAGGAAGCGCAGCTTTCCGAAACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACGATGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTKTTTTCCTCTTTTCTCTTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAAGAGAAGAGTAGTGAAAGTTGAAAAACACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20517</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1056926</contig_pos>
        <strand>+</strand>
        <context>AGGCACTACG[A/G]TGGATGTCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACG</left_flank>
        <right_flank>TGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTTTTTTCCTCTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATGTAGATCTGAGCGGCCTGCAGCACATCAATATCAATTGACCCATTTCTAGTGCTCATATCCTCCACGAGAATCCAATCGGTGGACAGCATTGCAAAGACAGCCTGAAAAAATCTTATATTTGATTTTCTCAAAGATTTTAGCTTACCAAGATTGCTGCAACAGTGTGGAACACGGTTGCCGGAATGTTGGCCTCGCGAAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGAAACGATTAAACGAAAGGATTTTGCTAGCCGAAAAAAAGTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATTGACAAAAATCTGCCGCCGGCTCCGGGGGTCCGCGCGAGCCGGAGGGAAATTGAGAAAAGAGAATCAATAGCGAAAGGCCTCCCGATGAGAGGAAGCGCAGCTTTCCGAAACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACGATGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTTTTTTCCTCTTTTCTCTTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAAGAGAAGAGTAGTGAAAGTTGAAAAACACGGAACAACACGGAACAACACACTGGAAACTTTTTACTGACTGCCCTTTTCTGAGAAAATGTTTTGACGAGAGAGTGAAAACGAAAATCCGAGTAGGCATAAGTGGGAGGGTCTCAAAAAGAAGACATTAAATTGATACACCCGTTTAGAAAGTGAAGATACTGGGATACCAATTGATCGAGAATGAAAAAGAAAATGAAAAAATCGAAACAGATGGAAGTACGCACGACCTTGACCAGTTAATTGGGGGAAGAAAAATCCAGTTTGTTTTCCAACAGAATGTATCGGTCTACCTATACATTTATCAAATGATAATTGGTTCAATAATGGCTATTCTGAAGACGATGTGATTTATATCTTATCTAATTGACTGATAGTGTATGCA</canonical>
            <polymorphic>TCATGTAGATCTGAGCGGCCTGCAGCACATCAATATCAATTGACCCATTTCTAGTGCTCATATCCTCCACGAGAATCCAATCGGTGGACAGCATTGCAAAGACAGCCTGAAAAAATCTTATATTTGATTTTCTCAAAGATTTTAGCTTACCAAGATTGCTGCAACAGTGTGGAACACGGTTGCCGGAATGTTGGCCTCGCGAAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGAAACGATTAAACGAAAGGATTTTGCTAGCCGAAAAAAAGTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATTGACAAAAATCTGCCGCCGGCTCCGGGGGTCCGCGCGAGCCGGAGGGAAATTGAGAAAAGAGAATCAATAGCGAAAGGCCTCCCGATGAGAGGAAGCGCAGCTTTCCGAAACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACGRTGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTTTTTTCCTCTTTTCTCTTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAAGAGAAGAGTAGTGAAAGTTGAAAAACACGGAACAACACGGAACAACACACTGGAAACTTTTTACTGACTGCCCTTTTCTGAGAAAATGTTTTGACGAGAGAGTGAAAACGAAAATCCGAGTAGGCATAAGTGGGAGGGTCTCAAAAAGAAGACATTAAATTGATACACCCGTTTAGAAAGTGAAGATACTGGGATACCAATTGATCGAGAATGAAAAAGAAAATGAAAAAATCGAAACAGATGGAAGTACGCACGACCTTGACCAGTTAATTGGGGGAAGAAAAATCCAGTTTGTTTTCCAACAGAATGTATCGGTCTACCTATACATTTATCAAATGATAATTGGTTCAATAATGGCTATTCTGAAGACGATGTGATTTATATCTTATCTAATTGACTGATAGTGTATGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAATTGAGAAAAGAGAATCA</pcr_primer_p1>
		<pcr_primer_p2>CGTGTTTTTCAACTTTCACTACT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>GGAAATTGAGAAAAGAGAATCAATAGCGAAAGGCCTCCCGATGAGAGGAAGCGCAGCTTTCCGAAACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACGATGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTTTTTTCCTCTTTTCTCTTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAAGAGAAGAGTAGTGAAAGTTGAAAAACACG</canonical_amplicon>
		<polymorphic_amplicon>GGAAATTGAGAAAAGAGAATCAATAGCGAAAGGCCTCCCGATGAGAGGAAGCGCAGCTTTCCGAAACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACGRTGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTTTTTTCCTCTTTTCTCTTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAAGAGAAGAGTAGTGAAAGTTGAAAAACACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20518</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1056794</contig_pos>
        <strand>+</strand>
        <context>CGGCTCCGGG[A/G]GTCCGCGCGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGGAAATCCAACGAAAAGAAATTGACAAAAATCTGCCGCCGGCTCCGGG</left_flank>
        <right_flank>GTCCGCGCGAGCCGGAGGGAAATTGAGAAAAGAGAATCAATAGCGAAAGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACAGCCTGTAATTATTTGCATTTATGAAGACGAAGCTTTCTCTTTTTGCAAACTAGTAATTGGCATCGTCTTCTCTGAAGCCACTTTCCTCAAAAAAACTCACCAATAGCATGGCAAGGCTCCGCATTCTTCATGTAGATCTGAGCGGCCTGCAGCACATCAATATCAATTGACCCATTTCTAGTGCTCATATCCTCCACGAGAATCCAATCGGTGGACAGCATTGCAAAGACAGCCTGAAAAAATCTTATATTTGATTTTCTCAAAGATTTTAGCTTACCAAGATTGCTGCAACAGTGTGGAACACGGTTGCCGGAATGTTGGCCTCGCGAAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGAAACGATTAAACGAAAGGATTTTGCTAGCCGAAAAAAAGTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATTGACAAAAATCTGCCGCCGGCTCCGGGGGTCCGCGCGAGCCGGAGGGAAATTGAGAAAAGAGAATCAATAGCGAAAGGCCTCCCGATGAGAGGAAGCGCAGCTTTCCGAAACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACGATGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTTTTTTCCTCTTTTCTCTTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAAGAGAAGAGTAGTGAAAGTTGAAAAACACGGAACAACACGGAACAACACACTGGAAACTTTTTACTGACTGCCCTTTTCTGAGAAAATGTTTTGACGAGAGAGTGAAAACGAAAATCCGAGTAGGCATAAGTGGGAGGGTCTCAAAAAGAAGACATTAAATTGATACACCCGTTTAGAAAGTGAAGATACTGGGATACCAATTGATCGAGAATGAAAAAGAAAATGAAAAAATCGAAACAGATGGAAGTACGCACGACCTTGACCAGTTAATTGGGGGAAG</canonical>
            <polymorphic>TGACAGCCTGTAATTATTTGCATTTATGAAGACGAAGCTTTCTCTTTTTGCAAACTAGTAATTGGCATCGTCTTCTCTGAAGCCACTTTCCTCAAAAAAACTCACCAATAGCATGGCAAGGCTCCGCATTCTTCATGTAGATCTGAGCGGCCTGCAGCACATCAATATCAATTGACCCATTTCTAGTGCTCATATCCTCCACGAGAATCCAATCGGTGGACAGCATTGCAAAGACAGCCTGAAAAAATCTTATATTTGATTTTCTCAAAGATTTTAGCTTACCAAGATTGCTGCAACAGTGTGGAACACGGTTGCCGGAATGTTGGCCTCGCGAAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGAAACGATTAAACGAAAGGATTTTGCTAGCCGAAAAAAAGTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATTGACAAAAATCTGCCGCCGGCTCCGGGRGTCCGCGCGAGCCGGAGGGAAATTGAGAAAAGAGAATCAATAGCGAAAGGCCTCCCGATGAGAGGAAGCGCAGCTTTCCGAAACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACGATGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTTTTTTCCTCTTTTCTCTTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAAGAGAAGAGTAGTGAAAGTTGAAAAACACGGAACAACACGGAACAACACACTGGAAACTTTTTACTGACTGCCCTTTTCTGAGAAAATGTTTTGACGAGAGAGTGAAAACGAAAATCCGAGTAGGCATAAGTGGGAGGGTCTCAAAAAGAAGACATTAAATTGATACACCCGTTTAGAAAGTGAAGATACTGGGATACCAATTGATCGAGAATGAAAAAGAAAATGAAAAAATCGAAACAGATGGAAGTACGCACGACCTTGACCAGTTAATTGGGGGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>499 235 136 122 8</canonical_bands>
                <polymorphic_bands>507 235 136 122</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGAGAGGAATCTGAACTTCT</pcr_primer_p1>
		<pcr_primer_p2>AAAGAGATAGTGAAAACGTAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATTGACAAAAATCTGCCGCCGGCTCCGGGGGTCCGCGCGAGCCGGAGGGAAATTGAGAAAAGAGAATCAATAGCGAAAGGCCTCCCGATGAGAGGAAGCGCAGCTTTCCGAAACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACGATGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTT</canonical_amplicon>
		<polymorphic_amplicon>TGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATTGACAAAAATCTGCCGCCGGCTCCGGGRGTCCGCGCGAGCCGGAGGGAAATTGAGAAAAGAGAATCAATAGCGAAAGGCCTCCCGATGAGAGGAAGCGCAGCTTTCCGAAACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACGATGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20519</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1056773</contig_pos>
        <strand>+</strand>
        <context>AAATTGACAA[A/G]AATCTGCCGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATTGACAA</left_flank>
        <right_flank>AATCTGCCGCCGGCTCCGGGGGTCCGCGCGAGCCGGAGGGAAATTGAGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGATAGCTTCCCAGAAATCGTGACAGCCTGTAATTATTTGCATTTATGAAGACGAAGCTTTCTCTTTTTGCAAACTAGTAATTGGCATCGTCTTCTCTGAAGCCACTTTCCTCAAAAAAACTCACCAATAGCATGGCAAGGCTCCGCATTCTTCATGTAGATCTGAGCGGCCTGCAGCACATCAATATCAATTGACCCATTTCTAGTGCTCATATCCTCCACGAGAATCCAATCGGTGGACAGCATTGCAAAGACAGCCTGAAAAAATCTTATATTTGATTTTCTCAAAGATTTTAGCTTACCAAGATTGCTGCAACAGTGTGGAACACGGTTGCCGGAATGTTGGCCTCGCGAAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGAAACGATTAAACGAAAGGATTTTGCTAGCCGAAAAAAAGTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATTGACAAAAATCTGCCGCCGGCTCCGGGGGTCCGCGCGAGCCGGAGGGAAATTGAGAAAAGAGAATCAATAGCGAAAGGCCTCCCGATGAGAGGAAGCGCAGCTTTCCGAAACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACGATGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTTTTTTCCTCTTTTCTCTTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAAGAGAAGAGTAGTGAAAGTTGAAAAACACGGAACAACACGGAACAACACACTGGAAACTTTTTACTGACTGCCCTTTTCTGAGAAAATGTTTTGACGAGAGAGTGAAAACGAAAATCCGAGTAGGCATAAGTGGGAGGGTCTCAAAAAGAAGACATTAAATTGATACACCCGTTTAGAAAGTGAAGATACTGGGATACCAATTGATCGAGAATGAAAAAGAAAATGAAAAAATCGAAACAGATGGAAGTACGCACGACCT</canonical>
            <polymorphic>CGGATAGCTTCCCAGAAATCGTGACAGCCTGTAATTATTTGCATTTATGAAGACGAAGCTTTCTCTTTTTGCAAACTAGTAATTGGCATCGTCTTCTCTGAAGCCACTTTCCTCAAAAAAACTCACCAATAGCATGGCAAGGCTCCGCATTCTTCATGTAGATCTGAGCGGCCTGCAGCACATCAATATCAATTGACCCATTTCTAGTGCTCATATCCTCCACGAGAATCCAATCGGTGGACAGCATTGCAAAGACAGCCTGAAAAAATCTTATATTTGATTTTCTCAAAGATTTTAGCTTACCAAGATTGCTGCAACAGTGTGGAACACGGTTGCCGGAATGTTGGCCTCGCGAAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGAAACGATTAAACGAAAGGATTTTGCTAGCCGAAAAAAAGTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATTGACAARAATCTGCCGCCGGCTCCGGGGGTCCGCGCGAGCCGGAGGGAAATTGAGAAAAGAGAATCAATAGCGAAAGGCCTCCCGATGAGAGGAAGCGCAGCTTTCCGAAACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACGATGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTTTTTTCCTCTTTTCTCTTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAAGAGAAGAGTAGTGAAAGTTGAAAAACACGGAACAACACGGAACAACACACTGGAAACTTTTTACTGACTGCCCTTTTCTGAGAAAATGTTTTGACGAGAGAGTGAAAACGAAAATCCGAGTAGGCATAAGTGGGAGGGTCTCAAAAAGAAGACATTAAATTGATACACCCGTTTAGAAAGTGAAGATACTGGGATACCAATTGATCGAGAATGAAAAAGAAAATGAAAAAATCGAAACAGATGGAAGTACGCACGACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGATCCATCCGTGTACAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTTCGCTATTGATTCTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>216</pcr_amplicon_size>
		<canonical_amplicon>AAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGAAACGATTAAACGAAAGGATTTTGCTAGCCGAAAAAAAGTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATTGACAAAAATCTGCCGCCGGCTCCGGGGGTCCGCGCGAGCCGGAGGGAAATTGAGAAAAGAGAATCAATAGCGAAAG</canonical_amplicon>
		<polymorphic_amplicon>AAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGAAACGATTAAACGAAAGGATTTTGCTAGCCGAAAAAAAGTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATTGACAARAATCTGCCGCCGGCTCCGGGGGTCCGCGCGAGCCGGAGGGAAATTGAGAAAAGAGAATCAATAGCGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20522</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1056697</contig_pos>
        <strand>+</strand>
        <context>AACGATTAAA[A/C]GAAAGGATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGAAACGATTAAA</left_flank>
        <right_flank>GAAAGGATTTTGCTAGCCGAAAAAAAGTGGAGAGGAATCTGAACTTCTGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTAATTGATACCTCTGGATGGGGTGTGGAAGGCGATGTGCGACTTTCCGTTCTCGTCAATGTATCCTCCGAAGCGGATAGCTTCCCAGAAATCGTGACAGCCTGTAATTATTTGCATTTATGAAGACGAAGCTTTCTCTTTTTGCAAACTAGTAATTGGCATCGTCTTCTCTGAAGCCACTTTCCTCAAAAAAACTCACCAATAGCATGGCAAGGCTCCGCATTCTTCATGTAGATCTGAGCGGCCTGCAGCACATCAATATCAATTGACCCATTTCTAGTGCTCATATCCTCCACGAGAATCCAATCGGTGGACAGCATTGCAAAGACAGCCTGAAAAAATCTTATATTTGATTTTCTCAAAGATTTTAGCTTACCAAGATTGCTGCAACAGTGTGGAACACGGTTGCCGGAATGTTGGCCTCGCGAAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGAAACGATTAAACGAAAGGATTTTGCTAGCCGAAAAAAAGTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATTGACAAAAATCTGCCGCCGGCTCCGGGGGTCCGCGCGAGCCGGAGGGAAATTGAGAAAAGAGAATCAATAGCGAAAGGCCTCCCGATGAGAGGAAGCGCAGCTTTCCGAAACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACGATGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTTTTTTCCTCTTTTCTCTTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAAGAGAAGAGTAGTGAAAGTTGAAAAACACGGAACAACACGGAACAACACACTGGAAACTTTTTACTGACTGCCCTTTTCTGAGAAAATGTTTTGACGAGAGAGTGAAAACGAAAATCCGAGTAGGCATAAGTGGGAGGGTCTCAAAAAGAAGACATTAAATTGATACACCCGTTTAGAAAGTGA</canonical>
            <polymorphic>TTTCTAATTGATACCTCTGGATGGGGTGTGGAAGGCGATGTGCGACTTTCCGTTCTCGTCAATGTATCCTCCGAAGCGGATAGCTTCCCAGAAATCGTGACAGCCTGTAATTATTTGCATTTATGAAGACGAAGCTTTCTCTTTTTGCAAACTAGTAATTGGCATCGTCTTCTCTGAAGCCACTTTCCTCAAAAAAACTCACCAATAGCATGGCAAGGCTCCGCATTCTTCATGTAGATCTGAGCGGCCTGCAGCACATCAATATCAATTGACCCATTTCTAGTGCTCATATCCTCCACGAGAATCCAATCGGTGGACAGCATTGCAAAGACAGCCTGAAAAAATCTTATATTTGATTTTCTCAAAGATTTTAGCTTACCAAGATTGCTGCAACAGTGTGGAACACGGTTGCCGGAATGTTGGCCTCGCGAAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGAAACGATTAAAMGAAAGGATTTTGCTAGCCGAAAAAAAGTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATTGACAAAAATCTGCCGCCGGCTCCGGGGGTCCGCGCGAGCCGGAGGGAAATTGAGAAAAGAGAATCAATAGCGAAAGGCCTCCCGATGAGAGGAAGCGCAGCTTTCCGAAACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACGATGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTTTTTTCCTCTTTTCTCTTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAAGAGAAGAGTAGTGAAAGTTGAAAAACACGGAACAACACGGAACAACACACTGGAAACTTTTTACTGACTGCCCTTTTCTGAGAAAATGTTTTGACGAGAGAGTGAAAACGAAAATCCGAGTAGGCATAAGTGGGAGGGTCTCAAAAAGAAGACATTAAATTGATACACCCGTTTAGAAAGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTCAAAGATTTTAGCTTACCA</pcr_primer_p1>
		<pcr_primer_p2>AATTTCTTTTCGTTGGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>212</pcr_amplicon_size>
		<canonical_amplicon>TTCTCAAAGATTTTAGCTTACCAAGATTGCTGCAACAGTGTGGAACACGGTTGCCGGAATGTTGGCCTCGCGAAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGAAACGATTAAACGAAAGGATTTTGCTAGCCGAAAAAAAGTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATT</canonical_amplicon>
		<polymorphic_amplicon>TTCTCAAAGATTTTAGCTTACCAAGATTGCTGCAACAGTGTGGAACACGGTTGCCGGAATGTTGGCCTCGCGAAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGAAACGATTAAAMGAAAGGATTTTGCTAGCCGAAAAAAAGTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20523</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1056686</contig_pos>
        <strand>+</strand>
        <context>TCTGAAAAGG[A/G]AACGATTAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGG</left_flank>
        <right_flank>AACGATTAAACGAAAGGATTTTGCTAGCCGAAAAAAAGTGGAGAGGAATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTATACGATTTCTAATTGATACCTCTGGATGGGGTGTGGAAGGCGATGTGCGACTTTCCGTTCTCGTCAATGTATCCTCCGAAGCGGATAGCTTCCCAGAAATCGTGACAGCCTGTAATTATTTGCATTTATGAAGACGAAGCTTTCTCTTTTTGCAAACTAGTAATTGGCATCGTCTTCTCTGAAGCCACTTTCCTCAAAAAAACTCACCAATAGCATGGCAAGGCTCCGCATTCTTCATGTAGATCTGAGCGGCCTGCAGCACATCAATATCAATTGACCCATTTCTAGTGCTCATATCCTCCACGAGAATCCAATCGGTGGACAGCATTGCAAAGACAGCCTGAAAAAATCTTATATTTGATTTTCTCAAAGATTTTAGCTTACCAAGATTGCTGCAACAGTGTGGAACACGGTTGCCGGAATGTTGGCCTCGCGAAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGAAACGATTAAACGAAAGGATTTTGCTAGCCGAAAAAAAGTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATTGACAAAAATCTGCCGCCGGCTCCGGGGGTCCGCGCGAGCCGGAGGGAAATTGAGAAAAGAGAATCAATAGCGAAAGGCCTCCCGATGAGAGGAAGCGCAGCTTTCCGAAACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACGATGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTTTTTTCCTCTTTTCTCTTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAAGAGAAGAGTAGTGAAAGTTGAAAAACACGGAACAACACGGAACAACACACTGGAAACTTTTTACTGACTGCCCTTTTCTGAGAAAATGTTTTGACGAGAGAGTGAAAACGAAAATCCGAGTAGGCATAAGTGGGAGGGTCTCAAAAAGAAGACATTAAATTGATACACCCGT</canonical>
            <polymorphic>AAATTATACGATTTCTAATTGATACCTCTGGATGGGGTGTGGAAGGCGATGTGCGACTTTCCGTTCTCGTCAATGTATCCTCCGAAGCGGATAGCTTCCCAGAAATCGTGACAGCCTGTAATTATTTGCATTTATGAAGACGAAGCTTTCTCTTTTTGCAAACTAGTAATTGGCATCGTCTTCTCTGAAGCCACTTTCCTCAAAAAAACTCACCAATAGCATGGCAAGGCTCCGCATTCTTCATGTAGATCTGAGCGGCCTGCAGCACATCAATATCAATTGACCCATTTCTAGTGCTCATATCCTCCACGAGAATCCAATCGGTGGACAGCATTGCAAAGACAGCCTGAAAAAATCTTATATTTGATTTTCTCAAAGATTTTAGCTTACCAAGATTGCTGCAACAGTGTGGAACACGGTTGCCGGAATGTTGGCCTCGCGAAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGRAACGATTAAACGAAAGGATTTTGCTAGCCGAAAAAAAGTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATTGACAAAAATCTGCCGCCGGCTCCGGGGGTCCGCGCGAGCCGGAGGGAAATTGAGAAAAGAGAATCAATAGCGAAAGGCCTCCCGATGAGAGGAAGCGCAGCTTTCCGAAACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACGATGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTTTTTTCCTCTTTTCTCTTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAAGAGAAGAGTAGTGAAAGTTGAAAAACACGGAACAACACGGAACAACACACTGGAAACTTTTTACTGACTGCCCTTTTCTGAGAAAATGTTTTGACGAGAGAGTGAAAACGAAAATCCGAGTAGGCATAAGTGGGAGGGTCTCAAAAAGAAGACATTAAATTGATACACCCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTCAAAGATTTTAGCTTACCA</pcr_primer_p1>
		<pcr_primer_p2>AATTTCTTTTCGTTGGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>212</pcr_amplicon_size>
		<canonical_amplicon>TTCTCAAAGATTTTAGCTTACCAAGATTGCTGCAACAGTGTGGAACACGGTTGCCGGAATGTTGGCCTCGCGAAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGAAACGATTAAACGAAAGGATTTTGCTAGCCGAAAAAAAGTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATT</canonical_amplicon>
		<polymorphic_amplicon>TTCTCAAAGATTTTAGCTTACCAAGATTGCTGCAACAGTGTGGAACACGGTTGCCGGAATGTTGGCCTCGCGAAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGRAACGATTAAACGAAAGGATTTTGCTAGCCGAAAAAAAGTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20524</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1056583</contig_pos>
        <strand>+</strand>
        <context>TTACCAAGAT[C/T]GCTGCAACAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGAAAAAATCTTATATTTGATTTTCTCAAAGATTTTAGCTTACCAAGAT</left_flank>
        <right_flank>GCTGCAACAGTGTGGAACACGGTTGCCGGAATGTTGGCCTCGCGAAGATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGTGGCAGAGATCACAAAGCATAAAGCGATGAGAATGTAGAAGTAGTTTGCAGTGGTTGGAGTGATGCAATCGACAAGGACTGGAAAAGAAAACAAGTTAGAAATTATACGATTTCTAATTGATACCTCTGGATGGGGTGTGGAAGGCGATGTGCGACTTTCCGTTCTCGTCAATGTATCCTCCGAAGCGGATAGCTTCCCAGAAATCGTGACAGCCTGTAATTATTTGCATTTATGAAGACGAAGCTTTCTCTTTTTGCAAACTAGTAATTGGCATCGTCTTCTCTGAAGCCACTTTCCTCAAAAAAACTCACCAATAGCATGGCAAGGCTCCGCATTCTTCATGTAGATCTGAGCGGCCTGCAGCACATCAATATCAATTGACCCATTTCTAGTGCTCATATCCTCCACGAGAATCCAATCGGTGGACAGCATTGCAAAGACAGCCTGAAAAAATCTTATATTTGATTTTCTCAAAGATTTTAGCTTACCAAGATTGCTGCAACAGTGTGGAACACGGTTGCCGGAATGTTGGCCTCGCGAAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGAAACGATTAAACGAAAGGATTTTGCTAGCCGAAAAAAAGTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATTGACAAAAATCTGCCGCCGGCTCCGGGGGTCCGCGCGAGCCGGAGGGAAATTGAGAAAAGAGAATCAATAGCGAAAGGCCTCCCGATGAGAGGAAGCGCAGCTTTCCGAAACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACGATGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTTTTTTCCTCTTTTCTCTTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAAGAGAAGAGTAGTGAAAGTTGAAAAACACGGAACAACACGGAACAACACACTGGAAACTTTTTACTGACT</canonical>
            <polymorphic>GACGTGGCAGAGATCACAAAGCATAAAGCGATGAGAATGTAGAAGTAGTTTGCAGTGGTTGGAGTGATGCAATCGACAAGGACTGGAAAAGAAAACAAGTTAGAAATTATACGATTTCTAATTGATACCTCTGGATGGGGTGTGGAAGGCGATGTGCGACTTTCCGTTCTCGTCAATGTATCCTCCGAAGCGGATAGCTTCCCAGAAATCGTGACAGCCTGTAATTATTTGCATTTATGAAGACGAAGCTTTCTCTTTTTGCAAACTAGTAATTGGCATCGTCTTCTCTGAAGCCACTTTCCTCAAAAAAACTCACCAATAGCATGGCAAGGCTCCGCATTCTTCATGTAGATCTGAGCGGCCTGCAGCACATCAATATCAATTGACCCATTTCTAGTGCTCATATCCTCCACGAGAATCCAATCGGTGGACAGCATTGCAAAGACAGCCTGAAAAAATCTTATATTTGATTTTCTCAAAGATTTTAGCTTACCAAGATYGCTGCAACAGTGTGGAACACGGTTGCCGGAATGTTGGCCTCGCGAAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGAAACGATTAAACGAAAGGATTTTGCTAGCCGAAAAAAAGTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATTGACAAAAATCTGCCGCCGGCTCCGGGGGTCCGCGCGAGCCGGAGGGAAATTGAGAAAAGAGAATCAATAGCGAAAGGCCTCCCGATGAGAGGAAGCGCAGCTTTCCGAAACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACGATGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTTTTTTCCTCTTTTCTCTTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAAGAGAAGAGTAGTGAAAGTTGAAAAACACGGAACAACACGGAACAACACACTGGAAACTTTTTACTGACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAATATCAATTGACCCATTT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTCAGAAGGATGTTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>ATCAATATCAATTGACCCATTTCTAGTGCTCATATCCTCCACGAGAATCCAATCGGTGGACAGCATTGCAAAGACAGCCTGAAAAAATCTTATATTTGATTTTCTCAAAGATTTTAGCTTACCAAGATTGCTGCAACAGTGTGGAACACGGTTGCCGGAATGTTGGCCTCGCGAAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAG</canonical_amplicon>
		<polymorphic_amplicon>ATCAATATCAATTGACCCATTTCTAGTGCTCATATCCTCCACGAGAATCCAATCGGTGGACAGCATTGCAAAGACAGCCTGAAAAAATCTTATATTTGATTTTCTCAAAGATTTTAGCTTACCAAGATYGCTGCAACAGTGTGGAACACGGTTGCCGGAATGTTGGCCTCGCGAAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20525</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1062847</contig_pos>
        <strand>+</strand>
        <context>CCGCCGTCTC[G/T]TCGATTCGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCGAGTCGCGTCTTCTTGCTCAACTCCTCGTTGCTCACGCCGCCGTCTC</left_flank>
        <right_flank>TCGATTCGCTCCACTTACTAGATCAAAATTCCCTATTTTTAAAGAAAACC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGATAATATAATCACAAGACTTCTACTCTTTGATTCGAAGAGATTTAATTGCCTAAAAAAACGACAGAAAGCGCTAAACGCCCATTTTCCACTTTGTACGCAAACACCGCGACGCAAAAATGCACAGCACGTTTTCCGGCAATTTGAAGTTATTTTTTTTCCTCTGAAACACAAAGTTAAGACAGTTTTCTGAATATGAACAGTGTGAAATTGTGAATTTTTTTGTTCAAAAACTTGAAAAAGTCAAAGCGGGGTGGGTTATAAAAAACAAATATTGATTTTCGAAATATCTTGTTTTAATTAATAATCTAAGTGTTTTCAGATCCTTTCCCGCGCTAAGCAGTACGTTCACAATGGAGATCTTGACAAGGCGATTCGTGTTGTGCAACTTTTGAAGGGACAACCCGCCCATTTGGCGCACGACTGGGTACTCGACACTCGTGCTTATCTCGAGTCGCGTCTTCTTGCTCAACTCCTCGTTGCTCACGCCGCCGTCTCTTCGATTCGCTCCACTTACTAGATCAAAATTCCCTATTTTTAAAGAAAACCTTGCGAACTTTTTCACGCTATCTACTGGTTTTATCCCCTACACTCATTTTGTAACAAAACTTACTACTCACGATTGAAAAAATCCTTAAACAGCTTTTGTTGGCTAGTATTTGTGCGTCTTTTAGAAAACCCGAATTCTGTGTTGGTAGTTTGTAGCACACGTTTCCCCCGTTTTCCGTTTATTTTGCCTTTTTTCTCCCAAAAATTTAAAAATGTGTAGTTTTTTTTTTCTCTGCGAACTTTGTTTGAGTAAATTTGAAGTTTTTTTGAGTAACTATATTTTCAAATGACATTCAGGAGACGGAAAATTTCTGAAATGGAGAGAAAGGGTCATCGAAAAGGGAGTGGCGCGCTGAAATGAATGGCATCGTTCTTGGCAAAATCGAGATAATTGAAAATTGACGTAAGGAGAGAGGAAGAGAATGAGCTATAAAAAATGCAAAAAATTTT</canonical>
            <polymorphic>GTGATAATATAATCACAAGACTTCTACTCTTTGATTCGAAGAGATTTAATTGCCTAAAAAAACGACAGAAAGCGCTAAACGCCCATTTTCCACTTTGTACGCAAACACCGCGACGCAAAAATGCACAGCACGTTTTCCGGCAATTTGAAGTTATTTTTTTTCCTCTGAAACACAAAGTTAAGACAGTTTTCTGAATATGAACAGTGTGAAATTGTGAATTTTTTTGTTCAAAAACTTGAAAAAGTCAAAGCGGGGTGGGTTATAAAAAACAAATATTGATTTTCGAAATATCTTGTTTTAATTAATAATCTAAGTGTTTTCAGATCCTTTCCCGCGCTAAGCAGTACGTTCACAATGGAGATCTTGACAAGGCGATTCGTGTTGTGCAACTTTTGAAGGGACAACCCGCCCATTTGGCGCACGACTGGGTACTCGACACTCGTGCTTATCTCGAGTCGCGTCTTCTTGCTCAACTCCTCGTTGCTCACGCCGCCGTCTCKTCGATTCGCTCCACTTACTAGATCAAAATTCCCTATTTTTAAAGAAAACCTTGCGAACTTTTTCACGCTATCTACTGGTTTTATCCCCTACACTCATTTTGTAACAAAACTTACTACTCACGATTGAAAAAATCCTTAAACAGCTTTTGTTGGCTAGTATTTGTGCGTCTTTTAGAAAACCCGAATTCTGTGTTGGTAGTTTGTAGCACACGTTTCCCCCGTTTTCCGTTTATTTTGCCTTTTTTCTCCCAAAAATTTAAAAATGTGTAGTTTTTTTTTTCTCTGCGAACTTTGTTTGAGTAAATTTGAAGTTTTTTTGAGTAACTATATTTTCAAATGACATTCAGGAGACGGAAAATTTCTGAAATGGAGAGAAAGGGTCATCGAAAAGGGAGTGGCGCGCTGAAATGAATGGCATCGTTCTTGGCAAAATCGAGATAATTGAAAATTGACGTAAGGAGAGAGGAAGAGAATGAGCTATAAAAAATGCAAAAAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAAGTGTTTTCAGATCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>GCAAGGTTTTCTTTAAAAATAGG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCTAAGTGTTTTCAGATCCTTTCCCGCGCTAAGCAGTACGTTCACAATGGAGATCTTGACAAGGCGATTCGTGTTGTGCAACTTTTGAAGGGACAACCCGCCCATTTGGCGCACGACTGGGTACTCGACACTCGTGCTTATCTCGAGTCGCGTCTTCTTGCTCAACTCCTCGTTGCTCACGCCGCCGTCTCTTCGATTCGCTCCACTTACTAGATCAAAATTCCCTATTTTTAAAGAAAACCTTGC</canonical_amplicon>
		<polymorphic_amplicon>TCTAAGTGTTTTCAGATCCTTTCCCGCGCTAAGCAGTACGTTCACAATGGAGATCTTGACAAGGCGATTCGTGTTGTGCAACTTTTGAAGGGACAACCCGCCCATTTGGCGCACGACTGGGTACTCGACACTCGTGCTTATCTCGAGTCGCGTCTTCTTGCTCAACTCCTCGTTGCTCACGCCGCCGTCTCKTCGATTCGCTCCACTTACTAGATCAAAATTCCCTATTTTTAAAGAAAACCTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20526</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1066590</contig_pos>
        <strand></strand>
        <context>AATTCAAATG[G/A]ACAATTTGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATGGTGTCAACTTTAGAGAAACGCTAGAAGATGAACAAAAATTCAAATG</left_flank>
        <right_flank>ACAATTTGTTTTTTACTTCTCAGAGCAAGACAAGGATGAAAACGACAGAT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGACAATATGTTGGGGAGGGAACCGACAGCAAAAAGCCGTGGATGTGGTGTTGGCATGCTGACGTCGCACTTTGAATTATTGGATTGCATAAATCGACTAGTTAGGGTGCAAAAAAGGAATAAGAGGGTGATACGATCTGTTTGAGTTTGCTCATATTGAAGCATGGGCAACAGATGGCGGTGCCTGGAACCAACACATCGATTTTCTAGGAAGACAAATGCAGCATGTGACGATCTGTTTTGAGTTATGACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATTAGGAAAAGAGATTCATAGCAAAATGTAAAAATGGCATACCGTATACATCATACTAAAGCAGAAAAATGGCATGCTGTATTTTTAGCCGGCACTTCCTAAGCAATACAATTGCTCCTATCCAAGTTTCTCAGCATCAAACACTCAGAATTTTTCTTTTTTCAATGGTGTCAACTTTAGAGAAACGCTAGAAGATGAACAAAAATTCAAATGGACAATTTGTTTTTTACTTCTCAGAGCAAGACAAGGATGAAAACGACAGATACATACATATACCCAGAAAGGATCATAAAAAATATAATTTGAATCATTAGATTGCATGAATTGAATTGATGGGATAGAAAAAATAGAGATGAGGTGATAAGATTTTTTTAAAAATTGCTTGGATGGAAACATGGACAACATCTGGTGGTGCCTGGAACCAACATATTGATTTTTCGGAATAAGAAATGACGATCTGTTAAAAGTTATGACTCATATTGTAGAGGGATGATGAGATGATATTTGGACCAAAACCAAGGGTTTTGAGAACATGGTTGCAGGACGGGCCATGGTAGATTACCGTCTACCAAACTGCCCGGTTTTCTTGGGCTGCTAGGCAGCCGACTATCACCTAACCCAGAAATACCATATTCAAAAAGCTGTGGCACAGTTTTTGACCGCCTTAACGAAAACTTGATAATATGGGGAAGGTGAGATTTTCAAAAAGACTTA</canonical>
            <polymorphic>GGACAATATGTTGGGGAGGGAACCGACAGCAAAAAGCCGTGGATGTGGTGTTGGCATGCTGACGTCGCACTTTGAATTATTGGATTGCATAAATCGACTAGTTAGGGTGCAAAAAAGGAATAAGAGGGTGATACGATCTGTTTGAGTTTGCTCATATTGAAGCATGGGCAACAGATGGCGGTGCCTGGAACCAACACATCGATTTTCTAGGAAGACAAATGCAGCATGTGACGATCTGTTTTGAGTTATGACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATTAGGAAAAGAGATTCATAGCAAAATGTAAAAATGGCATACCGTATACATCATACTAAAGCAGAAAAATGGCATGCTGTATTTTTAGCCGGCACTTCCTAAGCAATACAATTGCTCCTATCCAAGTTTCTCAGCATCAAACACTCAGAATTTTTCTTTTTTCAATGGTGTCAACTTTAGAGAAACGCTAGAAGATGAACAAAAATTCAAATGRACAATTTGTTTTTTACTTCTCAGAGCAAGACAAGGATGAAAACGACAGATACATACATATACCCAGAAAGGATCATAAAAAATATAATTTGAATCATTAGATTGCATGAATTGAATTGATGGGATAGAAAAAATAGAGATGAGGTGATAAGATTTTTTTAAAAATTGCTTGGATGGAAACATGGACAACATCTGGTGGTGCCTGGAACCAACATATTGATTTTTCGGAATAAGAAATGACGATCTGTTAAAAGTTATGACTCATATTGTAGAGGGATGATGAGATGATATTTGGACCAAAACCAAGGGTTTTGAGAACATGGTTGCAGGACGGGCCATGGTAGATTACCGTCTACCAAACTGCCCGGTTTTCTTGGGCTGCTAGGCAGCCGACTATCACCTAACCCAGAAATACCATATTCAAAAAGCTGTGGCACAGTTTTTGACCGCCTTAACGAAAACTTGATAATATGGGGAAGGTGAGATTTTCAAAAAGACTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATCATACTAAAGCAGAAAAATG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTATGATCCTTTCTGGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACATCATACTAAAGCAGAAAAATGGCATGCTGTATTTTTAGCCGGCACTTCCTAAGCAATACAATTGCTCCTATCCAAGTTTCTCAGCATCAAACACTCAGAATTTTTCTTTTTTCAATGGTGTCAACTTTAGAGAAACGCTAGAAGATGAACAAAAATTCAAATGGACAATTTGTTTTTTACTTCTCAGAGCAAGACAAGGATGAAAACGACAGATACATACATATACCCAGAAAGGATCATAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACATCATACTAAAGCAGAAAAATGGCATGCTGTATTTTTAGCCGGCACTTCCTAAGCAATACAATTGCTCCTATCCAAGTTTCTCAGCATCAAACACTCAGAATTTTTCTTTTTTCAATGGTGTCAACTTTAGAGAAACGCTAGAAGATGAACAAAAATTCAAATGRACAATTTGTTTTTTACTTCTCAGAGCAAGACAAGGATGAAAACGACAGATACATACATATACCCAGAAAGGATCATAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20527</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1066493</contig_pos>
        <strand></strand>
        <context>TACAAYTGCT[C/T]CTATCCAAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATGGCATGCTGTATTTTTAGCCGGCACTTCCTAAGCAATACAATTGCT</left_flank>
        <right_flank>CTATCCAAGTTTCTCAGCATCAAACACTCAGAATTTTTCTTTTTTCAATG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTTTTCTCCTTATTGTTTTTTTGTTTTGTTTGGAAGAAGAGAACATCACGAGGTGCGTTTTGTTTCGAAACGGGCGCAGCCAAAGAGGAGAGAGGGGACAATATGTTGGGGAGGGAACCGACAGCAAAAAGCCGTGGATGTGGTGTTGGCATGCTGACGTCGCACTTTGAATTATTGGATTGCATAAATCGACTAGTTAGGGTGCAAAAAAGGAATAAGAGGGTGATACGATCTGTTTGAGTTTGCTCATATTGAAGCATGGGCAACAGATGGCGGTGCCTGGAACCAACACATCGATTTTCTAGGAAGACAAATGCAGCATGTGACGATCTGTTTTGAGTTATGACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATTAGGAAAAGAGATTCATAGCAAAATGTAAAAATGGCATACCGTATACATCATACTAAAGCAGAAAAATGGCATGCTGTATTTTTAGCCGGCACTTCCTAAGCAATACAATTGCTCCTATCCAAGTTTCTCAGCATCAAACACTCAGAATTTTTCTTTTTTCAATGGTGTCAACTTTAGAGAAACGCTAGAAGATGAACAAAAATTCAAATGGACAATTTGTTTTTTACTTCTCAGAGCAAGACAAGGATGAAAACGACAGATACATACATATACCCAGAAAGGATCATAAAAAATATAATTTGAATCATTAGATTGCATGAATTGAATTGATGGGATAGAAAAAATAGAGATGAGGTGATAAGATTTTTTTAAAAATTGCTTGGATGGAAACATGGACAACATCTGGTGGTGCCTGGAACCAACATATTGATTTTTCGGAATAAGAAATGACGATCTGTTAAAAGTTATGACTCATATTGTAGAGGGATGATGAGATGATATTTGGACCAAAACCAAGGGTTTTGAGAACATGGTTGCAGGACGGGCCATGGTAGATTACCGTCTACCAAACTGCCCGGTTTTCTTGGGCTGCTAGGCAGCCGACTATCACCTAA</canonical>
            <polymorphic>CAGTTTTCTCCTTATTGTTTTTTTGTTTTGTTTGGAAGAAGAGAACATCACGAGGTGCGTTTTGTTTCGAAACGGGCGCAGCCAAAGAGGAGAGAGGGGACAATATGTTGGGGAGGGAACCGACAGCAAAAAGCCGTGGATGTGGTGTTGGCATGCTGACGTCGCACTTTGAATTATTGGATTGCATAAATCGACTAGTTAGGGTGCAAAAAAGGAATAAGAGGGTGATACGATCTGTTTGAGTTTGCTCATATTGAAGCATGGGCAACAGATGGCGGTGCCTGGAACCAACACATCGATTTTCTAGGAAGACAAATGCAGCATGTGACGATCTGTTTTGAGTTATGACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATTAGGAAAAGAGATTCATAGCAAAATGTAAAAATGGCATACCGTATACATCATACTAAAGCAGAAAAATGGCATGCTGTATTTTTAGCCGGCACTTCCTAAGCAATACAATTGCTYCTATCCAAGTTTCTCAGCATCAAACACTCAGAATTTTTCTTTTTTCAATGGTGTCAACTTTAGAGAAACGCTAGAAGATGAACAAAAATTCAAATGGACAATTTGTTTTTTACTTCTCAGAGCAAGACAAGGATGAAAACGACAGATACATACATATACCCAGAAAGGATCATAAAAAATATAATTTGAATCATTAGATTGCATGAATTGAATTGATGGGATAGAAAAAATAGAGATGAGGTGATAAGATTTTTTTAAAAATTGCTTGGATGGAAACATGGACAACATCTGGTGGTGCCTGGAACCAACATATTGATTTTTCGGAATAAGAAATGACGATCTGTTAAAAGTTATGACTCATATTGTAGAGGGATGATGAGATGATATTTGGACCAAAACCAAGGGTTTTGAGAACATGGTTGCAGGACGGGCCATGGTAGATTACCGTCTACCAAACTGCCCGGTTTTCTTGGGCTGCTAGGCAGCCGACTATCACCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTCACATAGTTGAGGAGTGAC</pcr_primer_p1>
		<pcr_primer_p2>CATTTGAATTTTTGTTCATCTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATTAGGAAAAGAGATTCATAGCAAAATGTAAAAATGGCATACCGTATACATCATACTAAAGCAGAAAAATGGCATGCTGTATTTTTAGCCGGCACTTCCTAAGCAATACAATTGCTCCTATCCAAGTTTCTCAGCATCAAACACTCAGAATTTTTCTTTTTTCAATGGTGTCAACTTTAGAGAAACGCTAGAAGATGAACAAAAATTCAAATG</canonical_amplicon>
		<polymorphic_amplicon>GACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATTAGGAAAAGAGATTCATAGCAAAATGTAAAAATGGCATACCGTATACATCATACTAAAGCAGAAAAATGGCATGCTGTATTTTTAGCCGGCACTTCCTAAGCAATACAATTGCTYCTATCCAAGTTTCTCAGCATCAAACACTCAGAATTTTTCTTTTTTCAATGGTGTCAACTTTAGAGAAACGCTAGAAGATGAACAAAAATTCAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20528</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1066488</contig_pos>
        <strand></strand>
        <context>AGCAATACAA[T/C]TGCTYCTATC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAGAAAAATGGCATGCTGTATTTTTAGCCGGCACTTCCTAAGCAATACAA</left_flank>
        <right_flank>TGCTCCTATCCAAGTTTCTCAGCATCAAACACTCAGAATTTTTCTTTTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGACAGTTTTCTCCTTATTGTTTTTTTGTTTTGTTTGGAAGAAGAGAACATCACGAGGTGCGTTTTGTTTCGAAACGGGCGCAGCCAAAGAGGAGAGAGGGGACAATATGTTGGGGAGGGAACCGACAGCAAAAAGCCGTGGATGTGGTGTTGGCATGCTGACGTCGCACTTTGAATTATTGGATTGCATAAATCGACTAGTTAGGGTGCAAAAAAGGAATAAGAGGGTGATACGATCTGTTTGAGTTTGCTCATATTGAAGCATGGGCAACAGATGGCGGTGCCTGGAACCAACACATCGATTTTCTAGGAAGACAAATGCAGCATGTGACGATCTGTTTTGAGTTATGACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATTAGGAAAAGAGATTCATAGCAAAATGTAAAAATGGCATACCGTATACATCATACTAAAGCAGAAAAATGGCATGCTGTATTTTTAGCCGGCACTTCCTAAGCAATACAATTGCTCCTATCCAAGTTTCTCAGCATCAAACACTCAGAATTTTTCTTTTTTCAATGGTGTCAACTTTAGAGAAACGCTAGAAGATGAACAAAAATTCAAATGGACAATTTGTTTTTTACTTCTCAGAGCAAGACAAGGATGAAAACGACAGATACATACATATACCCAGAAAGGATCATAAAAAATATAATTTGAATCATTAGATTGCATGAATTGAATTGATGGGATAGAAAAAATAGAGATGAGGTGATAAGATTTTTTTAAAAATTGCTTGGATGGAAACATGGACAACATCTGGTGGTGCCTGGAACCAACATATTGATTTTTCGGAATAAGAAATGACGATCTGTTAAAAGTTATGACTCATATTGTAGAGGGATGATGAGATGATATTTGGACCAAAACCAAGGGTTTTGAGAACATGGTTGCAGGACGGGCCATGGTAGATTACCGTCTACCAAACTGCCCGGTTTTCTTGGGCTGCTAGGCAGCCGACTATCA</canonical>
            <polymorphic>GATGACAGTTTTCTCCTTATTGTTTTTTTGTTTTGTTTGGAAGAAGAGAACATCACGAGGTGCGTTTTGTTTCGAAACGGGCGCAGCCAAAGAGGAGAGAGGGGACAATATGTTGGGGAGGGAACCGACAGCAAAAAGCCGTGGATGTGGTGTTGGCATGCTGACGTCGCACTTTGAATTATTGGATTGCATAAATCGACTAGTTAGGGTGCAAAAAAGGAATAAGAGGGTGATACGATCTGTTTGAGTTTGCTCATATTGAAGCATGGGCAACAGATGGCGGTGCCTGGAACCAACACATCGATTTTCTAGGAAGACAAATGCAGCATGTGACGATCTGTTTTGAGTTATGACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATTAGGAAAAGAGATTCATAGCAAAATGTAAAAATGGCATACCGTATACATCATACTAAAGCAGAAAAATGGCATGCTGTATTTTTAGCCGGCACTTCCTAAGCAATACAAYTGCTCCTATCCAAGTTTCTCAGCATCAAACACTCAGAATTTTTCTTTTTTCAATGGTGTCAACTTTAGAGAAACGCTAGAAGATGAACAAAAATTCAAATGGACAATTTGTTTTTTACTTCTCAGAGCAAGACAAGGATGAAAACGACAGATACATACATATACCCAGAAAGGATCATAAAAAATATAATTTGAATCATTAGATTGCATGAATTGAATTGATGGGATAGAAAAAATAGAGATGAGGTGATAAGATTTTTTTAAAAATTGCTTGGATGGAAACATGGACAACATCTGGTGGTGCCTGGAACCAACATATTGATTTTTCGGAATAAGAAATGACGATCTGTTAAAAGTTATGACTCATATTGTAGAGGGATGATGAGATGATATTTGGACCAAAACCAAGGGTTTTGAGAACATGGTTGCAGGACGGGCCATGGTAGATTACCGTCTACCAAACTGCCCGGTTTTCTTGGGCTGCTAGGCAGCCGACTATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>236 199 176 110 83 55 49 39 23 13 12 5</canonical_bands>
                <polymorphic_bands>236 199 176 149 83 55 49 23 13 12 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTCACATAGTTGAGGAGTGAC</pcr_primer_p1>
		<pcr_primer_p2>CATTTGAATTTTTGTTCATCTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATTAGGAAAAGAGATTCATAGCAAAATGTAAAAATGGCATACCGTATACATCATACTAAAGCAGAAAAATGGCATGCTGTATTTTTAGCCGGCACTTCCTAAGCAATACAATTGCTCCTATCCAAGTTTCTCAGCATCAAACACTCAGAATTTTTCTTTTTTCAATGGTGTCAACTTTAGAGAAACGCTAGAAGATGAACAAAAATTCAAATG</canonical_amplicon>
		<polymorphic_amplicon>GACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATTAGGAAAAGAGATTCATAGCAAAATGTAAAAATGGCATACCGTATACATCATACTAAAGCAGAAAAATGGCATGCTGTATTTTTAGCCGGCACTTCCTAAGCAATACAAYTGCTCCTATCCAAGTTTCTCAGCATCAAACACTCAGAATTTTTCTTTTTTCAATGGTGTCAACTTTAGAGAAACGCTAGAAGATGAACAAAAATTCAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20529</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1066330</contig_pos>
        <strand></strand>
        <context>GACGATCTGT[T/C]TTGAGTTATG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACCAACACATCGATTTTCTAGGAAGACAAATGCAGCATGTGACGATCTGT</left_flank>
        <right_flank>TTGAGTTATGACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACGAAAGGTTTTTTGTTAGTAAAAACGGTTGGTTTGAGTCCATTTAGAAGATGAGAGAAATGAGAGGGAGTGGAGACACAGTTGGACAATATATACTTTTGCTAATTGATGGCAAGTGATAGCATCTGAGGAGGAAGAAATAATTTTTTTGAAGAAGATGACAGTTTTCTCCTTATTGTTTTTTTGTTTTGTTTGGAAGAAGAGAACATCACGAGGTGCGTTTTGTTTCGAAACGGGCGCAGCCAAAGAGGAGAGAGGGGACAATATGTTGGGGAGGGAACCGACAGCAAAAAGCCGTGGATGTGGTGTTGGCATGCTGACGTCGCACTTTGAATTATTGGATTGCATAAATCGACTAGTTAGGGTGCAAAAAAGGAATAAGAGGGTGATACGATCTGTTTGAGTTTGCTCATATTGAAGCATGGGCAACAGATGGCGGTGCCTGGAACCAACACATCGATTTTCTAGGAAGACAAATGCAGCATGTGACGATCTGTTTTGAGTTATGACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATTAGGAAAAGAGATTCATAGCAAAATGTAAAAATGGCATACCGTATACATCATACTAAAGCAGAAAAATGGCATGCTGTATTTTTAGCCGGCACTTCCTAAGCAATACAATTGCTCCTATCCAAGTTTCTCAGCATCAAACACTCAGAATTTTTCTTTTTTCAATGGTGTCAACTTTAGAGAAACGCTAGAAGATGAACAAAAATTCAAATGGACAATTTGTTTTTTACTTCTCAGAGCAAGACAAGGATGAAAACGACAGATACATACATATACCCAGAAAGGATCATAAAAAATATAATTTGAATCATTAGATTGCATGAATTGAATTGATGGGATAGAAAAAATAGAGATGAGGTGATAAGATTTTTTTAAAAATTGCTTGGATGGAAACATGGACAACATCTGGTGGTGCCTGGAACCAACATATTGATTTTTCGGAATAAGAAATGAC</canonical>
            <polymorphic>TGACGAAAGGTTTTTTGTTAGTAAAAACGGTTGGTTTGAGTCCATTTAGAAGATGAGAGAAATGAGAGGGAGTGGAGACACAGTTGGACAATATATACTTTTGCTAATTGATGGCAAGTGATAGCATCTGAGGAGGAAGAAATAATTTTTTTGAAGAAGATGACAGTTTTCTCCTTATTGTTTTTTTGTTTTGTTTGGAAGAAGAGAACATCACGAGGTGCGTTTTGTTTCGAAACGGGCGCAGCCAAAGAGGAGAGAGGGGACAATATGTTGGGGAGGGAACCGACAGCAAAAAGCCGTGGATGTGGTGTTGGCATGCTGACGTCGCACTTTGAATTATTGGATTGCATAAATCGACTAGTTAGGGTGCAAAAAAGGAATAAGAGGGTGATACGATCTGTTTGAGTTTGCTCATATTGAAGCATGGGCAACAGATGGCGGTGCCTGGAACCAACACATCGATTTTCTAGGAAGACAAATGCAGCATGTGACGATCTGTYTTGAGTTATGACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATTAGGAAAAGAGATTCATAGCAAAATGTAAAAATGGCATACCGTATACATCATACTAAAGCAGAAAAATGGCATGCTGTATTTTTAGCCGGCACTTCCTAAGCAATACAATTGCTCCTATCCAAGTTTCTCAGCATCAAACACTCAGAATTTTTCTTTTTTCAATGGTGTCAACTTTAGAGAAACGCTAGAAGATGAACAAAAATTCAAATGGACAATTTGTTTTTTACTTCTCAGAGCAAGACAAGGATGAAAACGACAGATACATACATATACCCAGAAAGGATCATAAAAAATATAATTTGAATCATTAGATTGCATGAATTGAATTGATGGGATAGAAAAAATAGAGATGAGGTGATAAGATTTTTTTAAAAATTGCTTGGATGGAAACATGGACAACATCTGGTGGTGCCTGGAACCAACATATTGATTTTTCGGAATAAGAAATGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTGAATTATTGGATTGCATA</pcr_primer_p1>
		<pcr_primer_p2>CATTTTGCTATGAATCTCTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACTTTGAATTATTGGATTGCATAAATCGACTAGTTAGGGTGCAAAAAAGGAATAAGAGGGTGATACGATCTGTTTGAGTTTGCTCATATTGAAGCATGGGCAACAGATGGCGGTGCCTGGAACCAACACATCGATTTTCTAGGAAGACAAATGCAGCATGTGACGATCTGTTTTGAGTTATGACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATTAGGAAAAGAGATTCATAGCAAAATG</canonical_amplicon>
		<polymorphic_amplicon>ACTTTGAATTATTGGATTGCATAAATCGACTAGTTAGGGTGCAAAAAAGGAATAAGAGGGTGATACGATCTGTTTGAGTTTGCTCATATTGAAGCATGGGCAACAGATGGCGGTGCCTGGAACCAACACATCGATTTTCTAGGAAGACAAATGCAGCATGTGACGATCTGTYTTGAGTTATGACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATTAGGAAAAGAGATTCATAGCAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20530</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1066237</contig_pos>
        <strand></strand>
        <context>TCTGTTTGAG[T/A]TTGCTCATAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ACTAGTTAGGGTGCAAAAAAGGAATAAGAGGGTGATACGATCTGTTTGAG</left_flank>
        <right_flank>TTGCTCATATTGAAGCATGGGCAACAGATGGCGGTGCCTGGAACCAACAC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGTAAAGGAAGCGGGAGATGGGAAATGGAGAAGTGGAGAGGGTGAACAAGAAAAATAGGAAGAAAGAAGAGAGGAGAACGGAAGGATGGAATGACGAAAGGTTTTTTGTTAGTAAAAACGGTTGGTTTGAGTCCATTTAGAAGATGAGAGAAATGAGAGGGAGTGGAGACACAGTTGGACAATATATACTTTTGCTAATTGATGGCAAGTGATAGCATCTGAGGAGGAAGAAATAATTTTTTTGAAGAAGATGACAGTTTTCTCCTTATTGTTTTTTTGTTTTGTTTGGAAGAAGAGAACATCACGAGGTGCGTTTTGTTTCGAAACGGGCGCAGCCAAAGAGGAGAGAGGGGACAATATGTTGGGGAGGGAACCGACAGCAAAAAGCCGTGGATGTGGTGTTGGCATGCTGACGTCGCACTTTGAATTATTGGATTGCATAAATCGACTAGTTAGGGTGCAAAAAAGGAATAAGAGGGTGATACGATCTGTTTGAGTTTGCTCATATTGAAGCATGGGCAACAGATGGCGGTGCCTGGAACCAACACATCGATTTTCTAGGAAGACAAATGCAGCATGTGACGATCTGTTTTGAGTTATGACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATTAGGAAAAGAGATTCATAGCAAAATGTAAAAATGGCATACCGTATACATCATACTAAAGCAGAAAAATGGCATGCTGTATTTTTAGCCGGCACTTCCTAAGCAATACAATTGCTCCTATCCAAGTTTCTCAGCATCAAACACTCAGAATTTTTCTTTTTTCAATGGTGTCAACTTTAGAGAAACGCTAGAAGATGAACAAAAATTCAAATGGACAATTTGTTTTTTACTTCTCAGAGCAAGACAAGGATGAAAACGACAGATACATACATATACCCAGAAAGGATCATAAAAAATATAATTTGAATCATTAGATTGCATGAATTGAATTGATGGGATAGAAAAAATAGAGATGAGGTGA</canonical>
            <polymorphic>TGGGTAAAGGAAGCGGGAGATGGGAAATGGAGAAGTGGAGAGGGTGAACAAGAAAAATAGGAAGAAAGAAGAGAGGAGAACGGAAGGATGGAATGACGAAAGGTTTTTTGTTAGTAAAAACGGTTGGTTTGAGTCCATTTAGAAGATGAGAGAAATGAGAGGGAGTGGAGACACAGTTGGACAATATATACTTTTGCTAATTGATGGCAAGTGATAGCATCTGAGGAGGAAGAAATAATTTTTTTGAAGAAGATGACAGTTTTCTCCTTATTGTTTTTTTGTTTTGTTTGGAAGAAGAGAACATCACGAGGTGCGTTTTGTTTCGAAACGGGCGCAGCCAAAGAGGAGAGAGGGGACAATATGTTGGGGAGGGAACCGACAGCAAAAAGCCGTGGATGTGGTGTTGGCATGCTGACGTCGCACTTTGAATTATTGGATTGCATAAATCGACTAGTTAGGGTGCAAAAAAGGAATAAGAGGGTGATACGATCTGTTTGAGWTTGCTCATATTGAAGCATGGGCAACAGATGGCGGTGCCTGGAACCAACACATCGATTTTCTAGGAAGACAAATGCAGCATGTGACGATCTGTTTTGAGTTATGACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATTAGGAAAAGAGATTCATAGCAAAATGTAAAAATGGCATACCGTATACATCATACTAAAGCAGAAAAATGGCATGCTGTATTTTTAGCCGGCACTTCCTAAGCAATACAATTGCTCCTATCCAAGTTTCTCAGCATCAAACACTCAGAATTTTTCTTTTTTCAATGGTGTCAACTTTAGAGAAACGCTAGAAGATGAACAAAAATTCAAATGGACAATTTGTTTTTTACTTCTCAGAGCAAGACAAGGATGAAAACGACAGATACATACATATACCCAGAAAGGATCATAAAAAATATAATTTGAATCATTAGATTGCATGAATTGAATTGATGGGATAGAAAAAATAGAGATGAGGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTGAATTATTGGATTGCATA</pcr_primer_p1>
		<pcr_primer_p2>CATTTTGCTATGAATCTCTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACTTTGAATTATTGGATTGCATAAATCGACTAGTTAGGGTGCAAAAAAGGAATAAGAGGGTGATACGATCTGTTTGAGTTTGCTCATATTGAAGCATGGGCAACAGATGGCGGTGCCTGGAACCAACACATCGATTTTCTAGGAAGACAAATGCAGCATGTGACGATCTGTTTTGAGTTATGACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATTAGGAAAAGAGATTCATAGCAAAATG</canonical_amplicon>
		<polymorphic_amplicon>ACTTTGAATTATTGGATTGCATAAATCGACTAGTTAGGGTGCAAAAAAGGAATAAGAGGGTGATACGATCTGTTTGAGWTTGCTCATATTGAAGCATGGGCAACAGATGGCGGTGCCTGGAACCAACACATCGATTTTCTAGGAAGACAAATGCAGCATGTGACGATCTGTTTTGAGTTATGACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATTAGGAAAAGAGATTCATAGCAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20531</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1066218</contig_pos>
        <strand></strand>
        <context>GAATAAGAGG[G/A]TGATACGATC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TATTGGATTGCATAAATCGACTAGTTAGGGTGCAAAAAAGGAATAAGAGG</left_flank>
        <right_flank>TGATACGATCTGTTTGAGTTTGCTCATATTGAAGCATGGGCAACAGATGG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGAGGACGGCAAGGAATATGGGTAAAGGAAGCGGGAGATGGGAAATGGAGAAGTGGAGAGGGTGAACAAGAAAAATAGGAAGAAAGAAGAGAGGAGAACGGAAGGATGGAATGACGAAAGGTTTTTTGTTAGTAAAAACGGTTGGTTTGAGTCCATTTAGAAGATGAGAGAAATGAGAGGGAGTGGAGACACAGTTGGACAATATATACTTTTGCTAATTGATGGCAAGTGATAGCATCTGAGGAGGAAGAAATAATTTTTTTGAAGAAGATGACAGTTTTCTCCTTATTGTTTTTTTGTTTTGTTTGGAAGAAGAGAACATCACGAGGTGCGTTTTGTTTCGAAACGGGCGCAGCCAAAGAGGAGAGAGGGGACAATATGTTGGGGAGGGAACCGACAGCAAAAAGCCGTGGATGTGGTGTTGGCATGCTGACGTCGCACTTTGAATTATTGGATTGCATAAATCGACTAGTTAGGGTGCAAAAAAGGAATAAGAGGGTGATACGATCTGTTTGAGTTTGCTCATATTGAAGCATGGGCAACAGATGGCGGTGCCTGGAACCAACACATCGATTTTCTAGGAAGACAAATGCAGCATGTGACGATCTGTTTTGAGTTATGACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATTAGGAAAAGAGATTCATAGCAAAATGTAAAAATGGCATACCGTATACATCATACTAAAGCAGAAAAATGGCATGCTGTATTTTTAGCCGGCACTTCCTAAGCAATACAATTGCTCCTATCCAAGTTTCTCAGCATCAAACACTCAGAATTTTTCTTTTTTCAATGGTGTCAACTTTAGAGAAACGCTAGAAGATGAACAAAAATTCAAATGGACAATTTGTTTTTTACTTCTCAGAGCAAGACAAGGATGAAAACGACAGATACATACATATACCCAGAAAGGATCATAAAAAATATAATTTGAATCATTAGATTGCATGAATTGAATTGATGGGATAGA</canonical>
            <polymorphic>GTGAGGACGGCAAGGAATATGGGTAAAGGAAGCGGGAGATGGGAAATGGAGAAGTGGAGAGGGTGAACAAGAAAAATAGGAAGAAAGAAGAGAGGAGAACGGAAGGATGGAATGACGAAAGGTTTTTTGTTAGTAAAAACGGTTGGTTTGAGTCCATTTAGAAGATGAGAGAAATGAGAGGGAGTGGAGACACAGTTGGACAATATATACTTTTGCTAATTGATGGCAAGTGATAGCATCTGAGGAGGAAGAAATAATTTTTTTGAAGAAGATGACAGTTTTCTCCTTATTGTTTTTTTGTTTTGTTTGGAAGAAGAGAACATCACGAGGTGCGTTTTGTTTCGAAACGGGCGCAGCCAAAGAGGAGAGAGGGGACAATATGTTGGGGAGGGAACCGACAGCAAAAAGCCGTGGATGTGGTGTTGGCATGCTGACGTCGCACTTTGAATTATTGGATTGCATAAATCGACTAGTTAGGGTGCAAAAAAGGAATAAGAGGRTGATACGATCTGTTTGAGTTTGCTCATATTGAAGCATGGGCAACAGATGGCGGTGCCTGGAACCAACACATCGATTTTCTAGGAAGACAAATGCAGCATGTGACGATCTGTTTTGAGTTATGACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATTAGGAAAAGAGATTCATAGCAAAATGTAAAAATGGCATACCGTATACATCATACTAAAGCAGAAAAATGGCATGCTGTATTTTTAGCCGGCACTTCCTAAGCAATACAATTGCTCCTATCCAAGTTTCTCAGCATCAAACACTCAGAATTTTTCTTTTTTCAATGGTGTCAACTTTAGAGAAACGCTAGAAGATGAACAAAAATTCAAATGGACAATTTGTTTTTTACTTCTCAGAGCAAGACAAGGATGAAAACGACAGATACATACATATACCCAGAAAGGATCATAAAAAATATAATTTGAATCATTAGATTGCATGAATTGAATTGATGGGATAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>172 121 110 93 81 53 53 49 40 40 34 27 25 21 19 15 13 9 7 6 6 3 3</canonical_bands>
                <polymorphic_bands>172 121 110 93 81 74 53 49 40 40 34 27 25 19 15 13 9 7 6 6 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTTGAATTATTGGATTGCATA</pcr_primer_p1>
		<pcr_primer_p2>CATTTTGCTATGAATCTCTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACTTTGAATTATTGGATTGCATAAATCGACTAGTTAGGGTGCAAAAAAGGAATAAGAGGGTGATACGATCTGTTTGAGTTTGCTCATATTGAAGCATGGGCAACAGATGGCGGTGCCTGGAACCAACACATCGATTTTCTAGGAAGACAAATGCAGCATGTGACGATCTGTTTTGAGTTATGACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATTAGGAAAAGAGATTCATAGCAAAATG</canonical_amplicon>
		<polymorphic_amplicon>ACTTTGAATTATTGGATTGCATAAATCGACTAGTTAGGGTGCAAAAAAGGAATAAGAGGRTGATACGATCTGTTTGAGTTTGCTCATATTGAAGCATGGGCAACAGATGGCGGTGCCTGGAACCAACACATCGATTTTCTAGGAAGACAAATGCAGCATGTGACGATCTGTTTTGAGTTATGACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATTAGGAAAAGAGATTCATAGCAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20532</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1105732</contig_pos>
        <strand>+</strand>
        <context>CCGATTTTTT[C/T]AAAGCTAACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACCCAGACACGTCATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTT</left_flank>
        <right_flank>AAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTG</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTTGAAAAAAATCATGTTATCCATCCCAGAGCCACTTTTAGATATCATAATTCCTCTCAGCTTTTTCCGATAATTTTCTTATTCAGATCACGCATGAACCCGGAATTTTCCGGATTCGCTGTAAATTTCTTATTAGAGTGTAGGAGTATAGTAGGATACATTCATTTCATCTGCAGCCAACTCAAGAGGGAGCTCTGGCGTTTAATAAGCTCATTTTCAATTCACAAGACGTTACATGAGACGGATCTAGCAAGTTGGTCAACTTCACATAAACTCTCCTTTTATTACTTTAGTTTCATTTTTCCTCTTTCCTTGGACAGAAAAAGTTTCTACATCGCTTTGTTTGAGCTGAACATCCTGTCATCTGAACTAGCTCTGTTTGTCATTCATTGTCACGCACACAGACATCCTAATGAATGACAATTACTGTTTCTTCTCTTTTCCGGAAACCCAGACACGTCATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAGGTCAAAAGTGGTTTGTATAGTAAAAGCTAAAAAAAGAAACCGGTATCGTTTCCCACTAGTATTCCATTATACCGTCTATAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTAT</canonical>
            <polymorphic>TCCTTGAAAAAAATCATGTTATCCATCCCAGAGCCACTTTTAGATATCATAATTCCTCTCAGCTTTTTCCGATAATTTTCTTATTCAGATCACGCATGAACCCGGAATTTTCCGGATTCGCTGTAAATTTCTTATTAGAGTGTAGGAGTATAGTAGGATACATTCATTTCATCTGCAGCCAACTCAAGAGGGAGCTCTGGCGTTTAATAAGCTCATTTTCAATTCACAAGACGTTACATGAGACGGATCTAGCAAGTTGGTCAACTTCACATAAACTCTCCTTTTATTACTTTAGTTTCATTTTTCCTCTTTCCTTGGACAGAAAAAGTTTCTACATCGCTTTGTTTGAGCTGAACATCCTGTCATCTGAACTAGCTCTGTTTGTCATTCATTGTCACGCACACAGACATCCTAATGAATGACAATTACTGTTTCTTCTCTTTTCCGGAAACCCAGACACGTCATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTYAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAGGTCAAAAGTGGTTTGTATAGTAAAAGCTAAAAAAAGAAACCGGTATCGTTTCCCACTAGTATTCCATTATACCGTCTATAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTCCTTGGACAGAAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GAGGTTTGCAGACATTATTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTCCTTGGACAGAAAAAGTTTCTACATCGCTTTGTTTGAGCTGAACATCCTGTCATCTGAACTAGCTCTGTTTGTCATTCATTGTCACGCACACAGACATCCTAATGAATGACAATTACTGTTTCTTCTCTTTTCCGGAAACCCAGACACGTCATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTC</canonical_amplicon>
		<polymorphic_amplicon>CTTTCCTTGGACAGAAAAAGTTTCTACATCGCTTTGTTTGAGCTGAACATCCTGTCATCTGAACTAGCTCTGTTTGTCATTCATTGTCACGCACACAGACATCCTAATGAATGACAATTACTGTTTCTTCTCTTTTCCGGAAACCCAGACACGTCATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTYAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20533</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1105791</contig_pos>
        <strand>+</strand>
        <context>TGCAAACCTC[C/T]AATTTTYATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTC</left_flank>
        <right_flank>AATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCTTTTTCCGATAATTTTCTTATTCAGATCACGCATGAACCCGGAATTTTCCGGATTCGCTGTAAATTTCTTATTAGAGTGTAGGAGTATAGTAGGATACATTCATTTCATCTGCAGCCAACTCAAGAGGGAGCTCTGGCGTTTAATAAGCTCATTTTCAATTCACAAGACGTTACATGAGACGGATCTAGCAAGTTGGTCAACTTCACATAAACTCTCCTTTTATTACTTTAGTTTCATTTTTCCTCTTTCCTTGGACAGAAAAAGTTTCTACATCGCTTTGTTTGAGCTGAACATCCTGTCATCTGAACTAGCTCTGTTTGTCATTCATTGTCACGCACACAGACATCCTAATGAATGACAATTACTGTTTCTTCTCTTTTCCGGAAACCCAGACACGTCATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAGGTCAAAAGTGGTTTGTATAGTAAAAGCTAAAAAAAGAAACCGGTATCGTTTCCCACTAGTATTCCATTATACCGTCTATAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCAC</canonical>
            <polymorphic>CAGCTTTTTCCGATAATTTTCTTATTCAGATCACGCATGAACCCGGAATTTTCCGGATTCGCTGTAAATTTCTTATTAGAGTGTAGGAGTATAGTAGGATACATTCATTTCATCTGCAGCCAACTCAAGAGGGAGCTCTGGCGTTTAATAAGCTCATTTTCAATTCACAAGACGTTACATGAGACGGATCTAGCAAGTTGGTCAACTTCACATAAACTCTCCTTTTATTACTTTAGTTTCATTTTTCCTCTTTCCTTGGACAGAAAAAGTTTCTACATCGCTTTGTTTGAGCTGAACATCCTGTCATCTGAACTAGCTCTGTTTGTCATTCATTGTCACGCACACAGACATCCTAATGAATGACAATTACTGTTTCTTCTCTTTTCCGGAAACCCAGACACGTCATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCYAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAGGTCAAAAGTGGTTTGTATAGTAAAAGCTAAAAAAAGAAACCGGTATCGTTTCCCACTAGTATTCCATTATACCGTCTATAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGAGGCGCATATTTTAG</pcr_primer_p1>
		<pcr_primer_p2>ATTGTGTCAGGTGACTAGTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAAT</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCYAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20534</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1105798</contig_pos>
        <strand>+</strand>
        <context>CTCYAATTTT[C/T]ATATAGTATC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTT</left_flank>
        <right_flank>ATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCGATAATTTTCTTATTCAGATCACGCATGAACCCGGAATTTTCCGGATTCGCTGTAAATTTCTTATTAGAGTGTAGGAGTATAGTAGGATACATTCATTTCATCTGCAGCCAACTCAAGAGGGAGCTCTGGCGTTTAATAAGCTCATTTTCAATTCACAAGACGTTACATGAGACGGATCTAGCAAGTTGGTCAACTTCACATAAACTCTCCTTTTATTACTTTAGTTTCATTTTTCCTCTTTCCTTGGACAGAAAAAGTTTCTACATCGCTTTGTTTGAGCTGAACATCCTGTCATCTGAACTAGCTCTGTTTGTCATTCATTGTCACGCACACAGACATCCTAATGAATGACAATTACTGTTTCTTCTCTTTTCCGGAAACCCAGACACGTCATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAGGTCAAAAGTGGTTTGTATAGTAAAAGCTAAAAAAAGAAACCGGTATCGTTTCCCACTAGTATTCCATTATACCGTCTATAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGG</canonical>
            <polymorphic>TTCCGATAATTTTCTTATTCAGATCACGCATGAACCCGGAATTTTCCGGATTCGCTGTAAATTTCTTATTAGAGTGTAGGAGTATAGTAGGATACATTCATTTCATCTGCAGCCAACTCAAGAGGGAGCTCTGGCGTTTAATAAGCTCATTTTCAATTCACAAGACGTTACATGAGACGGATCTAGCAAGTTGGTCAACTTCACATAAACTCTCCTTTTATTACTTTAGTTTCATTTTTCCTCTTTCCTTGGACAGAAAAAGTTTCTACATCGCTTTGTTTGAGCTGAACATCCTGTCATCTGAACTAGCTCTGTTTGTCATTCATTGTCACGCACACAGACATCCTAATGAATGACAATTACTGTTTCTTCTCTTTTCCGGAAACCCAGACACGTCATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTYATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAGGTCAAAAGTGGTTTGTATAGTAAAAGCTAAAAAAAGAAACCGGTATCGTTTCCCACTAGTATTCCATTATACCGTCTATAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGAGGCGCATATTTTAG</pcr_primer_p1>
		<pcr_primer_p2>ATTGTGTCAGGTGACTAGTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAAT</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTYATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20535</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1105855</contig_pos>
        <strand></strand>
        <context>TGCGAAACAA[A/G]AAACRGAGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAA</left_flank>
        <right_flank>AAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATTTCTTATTAGAGTGTAGGAGTATAGTAGGATACATTCATTTCATCTGCAGCCAACTCAAGAGGGAGCTCTGGCGTTTAATAAGCTCATTTTCAATTCACAAGACGTTACATGAGACGGATCTAGCAAGTTGGTCAACTTCACATAAACTCTCCTTTTATTACTTTAGTTTCATTTTTCCTCTTTCCTTGGACAGAAAAAGTTTCTACATCGCTTTGTTTGAGCTGAACATCCTGTCATCTGAACTAGCTCTGTTTGTCATTCATTGTCACGCACACAGACATCCTAATGAATGACAATTACTGTTTCTTCTCTTTTCCGGAAACCCAGACACGTCATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAGGTCAAAAGTGGTTTGTATAGTAAAAGCTAAAAAAAGAAACCGGTATCGTTTCCCACTAGTATTCCATTATACCGTCTATAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGATATT</canonical>
            <polymorphic>TAAATTTCTTATTAGAGTGTAGGAGTATAGTAGGATACATTCATTTCATCTGCAGCCAACTCAAGAGGGAGCTCTGGCGTTTAATAAGCTCATTTTCAATTCACAAGACGTTACATGAGACGGATCTAGCAAGTTGGTCAACTTCACATAAACTCTCCTTTTATTACTTTAGTTTCATTTTTCCTCTTTCCTTGGACAGAAAAAGTTTCTACATCGCTTTGTTTGAGCTGAACATCCTGTCATCTGAACTAGCTCTGTTTGTCATTCATTGTCACGCACACAGACATCCTAATGAATGACAATTACTGTTTCTTCTCTTTTCCGGAAACCCAGACACGTCATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAARAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAGGTCAAAAGTGGTTTGTATAGTAAAAGCTAAAAAAAGAAACCGGTATCGTTTCCCACTAGTATTCCATTATACCGTCTATAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGAGGCGCATATTTTAG</pcr_primer_p1>
		<pcr_primer_p2>ATTGTGTCAGGTGACTAGTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAAT</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAARAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20536</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1105860</contig_pos>
        <strand></strand>
        <context>AACAARAAAC[G/A]GAGCAGAATA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAAC</left_flank>
        <right_flank>GAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTATTAGAGTGTAGGAGTATAGTAGGATACATTCATTTCATCTGCAGCCAACTCAAGAGGGAGCTCTGGCGTTTAATAAGCTCATTTTCAATTCACAAGACGTTACATGAGACGGATCTAGCAAGTTGGTCAACTTCACATAAACTCTCCTTTTATTACTTTAGTTTCATTTTTCCTCTTTCCTTGGACAGAAAAAGTTTCTACATCGCTTTGTTTGAGCTGAACATCCTGTCATCTGAACTAGCTCTGTTTGTCATTCATTGTCACGCACACAGACATCCTAATGAATGACAATTACTGTTTCTTCTCTTTTCCGGAAACCCAGACACGTCATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAGGTCAAAAGTGGTTTGTATAGTAAAAGCTAAAAAAAGAAACCGGTATCGTTTCCCACTAGTATTCCATTATACCGTCTATAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGATATTTTGAA</canonical>
            <polymorphic>TTCTTATTAGAGTGTAGGAGTATAGTAGGATACATTCATTTCATCTGCAGCCAACTCAAGAGGGAGCTCTGGCGTTTAATAAGCTCATTTTCAATTCACAAGACGTTACATGAGACGGATCTAGCAAGTTGGTCAACTTCACATAAACTCTCCTTTTATTACTTTAGTTTCATTTTTCCTCTTTCCTTGGACAGAAAAAGTTTCTACATCGCTTTGTTTGAGCTGAACATCCTGTCATCTGAACTAGCTCTGTTTGTCATTCATTGTCACGCACACAGACATCCTAATGAATGACAATTACTGTTTCTTCTCTTTTCCGGAAACCCAGACACGTCATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACRGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAGGTCAAAAGTGGTTTGTATAGTAAAAGCTAAAAAAAGAAACCGGTATCGTTTCCCACTAGTATTCCATTATACCGTCTATAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGATATTTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGAGGCGCATATTTTAG</pcr_primer_p1>
		<pcr_primer_p2>ATTGTGTCAGGTGACTAGTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAAT</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACRGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20537</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1105885</contig_pos>
        <strand>+</strand>
        <context>GATATCAATA[A/G]GTTACGACTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATA</left_flank>
        <right_flank>GTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGATACATTCATTTCATCTGCAGCCAACTCAAGAGGGAGCTCTGGCGTTTAATAAGCTCATTTTCAATTCACAAGACGTTACATGAGACGGATCTAGCAAGTTGGTCAACTTCACATAAACTCTCCTTTTATTACTTTAGTTTCATTTTTCCTCTTTCCTTGGACAGAAAAAGTTTCTACATCGCTTTGTTTGAGCTGAACATCCTGTCATCTGAACTAGCTCTGTTTGTCATTCATTGTCACGCACACAGACATCCTAATGAATGACAATTACTGTTTCTTCTCTTTTCCGGAAACCCAGACACGTCATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAGGTCAAAAGTGGTTTGTATAGTAAAAGCTAAAAAAAGAAACCGGTATCGTTTCCCACTAGTATTCCATTATACCGTCTATAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGATATTTTGAAAGTGTTTAATCTGCATTTTCCGATT</canonical>
            <polymorphic>TAGGATACATTCATTTCATCTGCAGCCAACTCAAGAGGGAGCTCTGGCGTTTAATAAGCTCATTTTCAATTCACAAGACGTTACATGAGACGGATCTAGCAAGTTGGTCAACTTCACATAAACTCTCCTTTTATTACTTTAGTTTCATTTTTCCTCTTTCCTTGGACAGAAAAAGTTTCTACATCGCTTTGTTTGAGCTGAACATCCTGTCATCTGAACTAGCTCTGTTTGTCATTCATTGTCACGCACACAGACATCCTAATGAATGACAATTACTGTTTCTTCTCTTTTCCGGAAACCCAGACACGTCATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATARGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAGGTCAAAAGTGGTTTGTATAGTAAAAGCTAAAAAAAGAAACCGGTATCGTTTCCCACTAGTATTCCATTATACCGTCTATAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGATATTTTGAAAGTGTTTAATCTGCATTTTCCGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGAGGCGCATATTTTAG</pcr_primer_p1>
		<pcr_primer_p2>ATTGTGTCAGGTGACTAGTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAAT</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATARGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20538</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1105898</contig_pos>
        <strand>+</strand>
        <context>TACGACTAGG[G/T]TAGAAATCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGG</left_flank>
        <right_flank>TAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCATCTGCAGCCAACTCAAGAGGGAGCTCTGGCGTTTAATAAGCTCATTTTCAATTCACAAGACGTTACATGAGACGGATCTAGCAAGTTGGTCAACTTCACATAAACTCTCCTTTTATTACTTTAGTTTCATTTTTCCTCTTTCCTTGGACAGAAAAAGTTTCTACATCGCTTTGTTTGAGCTGAACATCCTGTCATCTGAACTAGCTCTGTTTGTCATTCATTGTCACGCACACAGACATCCTAATGAATGACAATTACTGTTTCTTCTCTTTTCCGGAAACCCAGACACGTCATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAGGTCAAAAGTGGTTTGTATAGTAAAAGCTAAAAAAAGAAACCGGTATCGTTTCCCACTAGTATTCCATTATACCGTCTATAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGATATTTTGAAAGTGTTTAATCTGCATTTTCCGATTTTTAAATTATTCA</canonical>
            <polymorphic>TTTCATCTGCAGCCAACTCAAGAGGGAGCTCTGGCGTTTAATAAGCTCATTTTCAATTCACAAGACGTTACATGAGACGGATCTAGCAAGTTGGTCAACTTCACATAAACTCTCCTTTTATTACTTTAGTTTCATTTTTCCTCTTTCCTTGGACAGAAAAAGTTTCTACATCGCTTTGTTTGAGCTGAACATCCTGTCATCTGAACTAGCTCTGTTTGTCATTCATTGTCACGCACACAGACATCCTAATGAATGACAATTACTGTTTCTTCTCTTTTCCGGAAACCCAGACACGTCATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGKTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAGGTCAAAAGTGGTTTGTATAGTAAAAGCTAAAAAAAGAAACCGGTATCGTTTCCCACTAGTATTCCATTATACCGTCTATAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGATATTTTGAAAGTGTTTAATCTGCATTTTCCGATTTTTAAATTATTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAACTCTTGAGCTAACGTAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTAGCTTTTACTATACAAACCAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAGGTCAAAAGTGGTTTGTATAGTAAAAGCTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGKTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAGGTCAAAAGTGGTTTGTATAGTAAAAGCTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20539</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1106077</contig_pos>
        <strand>+</strand>
        <context>TAAAATTTTA[A/T]AAATAWCTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTA</left_flank>
        <right_flank>AAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAGCTGAACATCCTGTCATCTGAACTAGCTCTGTTTGTCATTCATTGTCACGCACACAGACATCCTAATGAATGACAATTACTGTTTCTTCTCTTTTCCGGAAACCCAGACACGTCATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAGGTCAAAAGTGGTTTGTATAGTAAAAGCTAAAAAAAGAAACCGGTATCGTTTCCCACTAGTATTCCATTATACCGTCTATAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGATATTTTGAAAGTGTTTAATCTGCATTTTCCGATTTTTAAATTATTCAGATTTTCCACTTCAAGCAAGTTCTCCAGGTTGATGAGATTTTGCAAAATGTAAATCTGAAAAATTGGCATAATTTGAAAAAGTTAAATGAATTGAAAACTTACAGAAATGTAACAATTTTTAAAACAATTTCCTAGATATTGTTTATTGACTTCAAGAAAATAATTTTCAGCTGTTTCT</canonical>
            <polymorphic>TTGAGCTGAACATCCTGTCATCTGAACTAGCTCTGTTTGTCATTCATTGTCACGCACACAGACATCCTAATGAATGACAATTACTGTTTCTTCTCTTTTCCGGAAACCCAGACACGTCATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAGGTCAAAAGTGGTTTGTATAGTAAAAGCTAAAAAAAGAAACCGGTATCGTTTCCCACTAGTATTCCATTATACCGTCTATAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAWAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGATATTTTGAAAGTGTTTAATCTGCATTTTCCGATTTTTAAATTATTCAGATTTTCCACTTCAAGCAAGTTCTCCAGGTTGATGAGATTTTGCAAAATGTAAATCTGAAAAATTGGCATAATTTGAAAAAGTTAAATGAATTGAAAACTTACAGAAATGTAACAATTTTTAAAACAATTTCCTAGATATTGTTTATTGACTTCAAGAAAATAATTTTCAGCTGTTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>498 313 131 58</canonical_bands>
                <polymorphic_bands>811 131 58</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>489 162 94 91 59 39 37 21 8</canonical_bands>
                <polymorphic_bands>489 170 94 91 59 39 37 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATAAGCATGCGATAGTGTGAG</pcr_primer_p1>
		<pcr_primer_p2>TCAAAAACCTAGAACAATTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>TATAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGA</canonical_amplicon>
		<polymorphic_amplicon>TATAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAWAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20540</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1106083</contig_pos>
        <strand>+</strand>
        <context>TTTAWAAATA[A/T]CTGAAACGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATA</left_flank>
        <right_flank>CTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAACATCCTGTCATCTGAACTAGCTCTGTTTGTCATTCATTGTCACGCACACAGACATCCTAATGAATGACAATTACTGTTTCTTCTCTTTTCCGGAAACCCAGACACGTCATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAGGTCAAAAGTGGTTTGTATAGTAAAAGCTAAAAAAAGAAACCGGTATCGTTTCCCACTAGTATTCCATTATACCGTCTATAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGATATTTTGAAAGTGTTTAATCTGCATTTTCCGATTTTTAAATTATTCAGATTTTCCACTTCAAGCAAGTTCTCCAGGTTGATGAGATTTTGCAAAATGTAAATCTGAAAAATTGGCATAATTTGAAAAAGTTAAATGAATTGAAAACTTACAGAAATGTAACAATTTTTAAAACAATTTCCTAGATATTGTTTATTGACTTCAAGAAAATAATTTTCAGCTGTTTCTAATCTT</canonical>
            <polymorphic>TGAACATCCTGTCATCTGAACTAGCTCTGTTTGTCATTCATTGTCACGCACACAGACATCCTAATGAATGACAATTACTGTTTCTTCTCTTTTCCGGAAACCCAGACACGTCATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAGGTCAAAAGTGGTTTGTATAGTAAAAGCTAAAAAAAGAAACCGGTATCGTTTCCCACTAGTATTCCATTATACCGTCTATAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAWCTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGATATTTTGAAAGTGTTTAATCTGCATTTTCCGATTTTTAAATTATTCAGATTTTCCACTTCAAGCAAGTTCTCCAGGTTGATGAGATTTTGCAAAATGTAAATCTGAAAAATTGGCATAATTTGAAAAAGTTAAATGAATTGAAAACTTACAGAAATGTAACAATTTTTAAAACAATTTCCTAGATATTGTTTATTGACTTCAAGAAAATAATTTTCAGCTGTTTCTAATCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCGATAGTGTGAGTTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCAAAAACCTAGAACAATTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>319</pcr_amplicon_size>
		<canonical_amplicon>TGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGA</canonical_amplicon>
		<polymorphic_amplicon>TGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAWCTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20541</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1107749</contig_pos>
        <strand>+</strand>
        <context>CTTTTTKCTY[C/T]TTTTCAAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGCATTTTTTCTGCGTAATCCCATATTTCATTCTTTTCTCTTTTTTCTC</left_flank>
        <right_flank>TTTTCAAAAGAGCGACGCGTGACACGTTTTGTTTTATAGTTTCTTGGTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGCGTGGTCCATAGAGGAGGTGGAAAAAGGGGAGAGTGAGGGGGGGGGGGGTTTAGAAAAAAAGACGGCGGCGTTAAGAGCGGAAAAAAAGAAACATTAGTATCTCCTTTACTTGTCAATGCATTAATTCTGTTTTGTGTATGCTGTTTTTGCCGTTTCACATTCGCGTTATTTTTCTAGAAATTCCTAAGAATTGGAATTGGGAAAAGAATAGGATTAGTTTTTGAATTAGACTGGTGATGACAACATACGCAACATGAGAAAAAACAGAGCTTAGAGTATCAGCGTTGTCGATCAAAGCGTATTATGCGGCAAGTTAAGAGAGAAGCCAAAACAATACTTTATTCCTTCTGCTCGTTTCCTCCTCTTTTCCTCTTTTTCTCGCAGATTCGCCGTTCCAATCTTTTCTATTCTTCTCCTTTCTCTTCGAGATTTCATTTCTACATGAGGCATTTTTTCTGCGTAATCCCATATTTCATTCTTTTCTCTTTTTTCTCCTTTTCAAAAGAGCGACGCGTGACACGTTTTGTTTTATAGTTTCTTGGTTTTTTAGACACCTCTCTTTCTTTTTAAACCTTTTCTAAAACGTCTCTATGCATATTTCATGCGAAACGCCGTGAGAAATGCCACCCGTTGCTTGGTGATGCGCCAGGAAAACTTTTCGACATGCATTTTTTTTTGCTCTTCCCGCCTTTCACAACATTTTTTGAAACAAAAGGCAATGAGGAGCATTCGTATCGTCACGACGATCATTTTTTCGCTTTCGCCTTCTTTTTTTCTTTCTCAGCTGCTCTTTTTCCTTTTTTCTTACTAGCCTTCTCCTTGAAATAATGAGTTTCACCGCCTGACAGTTGTGAGTCTTTGTCGAGAGTTCTCTTTTTTTGAAAATTCCCACCCCAATTTTTTTCGAACTTTCAGAACTCCAGTTTTGTGAGAACCTTTCCGGCGGATATGATATACTTATTTTCATTCTCTTTTGATATATTTTTTGAACACTT</canonical>
            <polymorphic>TAAGCGTGGTCCATAGAGGAGGTGGAAAAAGGGGAGAGTGAGGGGGGGGGGGGTTTAGAAAAAAAGACGGCGGCGTTAAGAGCGGAAAAAAAGAAACATTAGTATCTCCTTTACTTGTCAATGCATTAATTCTGTTTTGTGTATGCTGTTTTTGCCGTTTCACATTCGCGTTATTTTTCTAGAAATTCCTAAGAATTGGAATTGGGAAAAGAATAGGATTAGTTTTTGAATTAGACTGGTGATGACAACATACGCAACATGAGAAAAAACAGAGCTTAGAGTATCAGCGTTGTCGATCAAAGCGTATTATGCGGCAAGTTAAGAGAGAAGCCAAAACAATACTTTATTCCTTCTGCTCGTTTCCTCCTCTTTTCCTCTTTTTCTCGCAGATTCGCCGTTCCAATCTTTTCTATTCTTCTCCTTTCTCTTCGAGATTTCATTTCTACATGAGGCATTTTTTCTGCGTAATCCCATATTTCATTCTTTTCTCTTTTTTCTCYTTTTCAAAAGAGCGACGCGTGACACGTTTTGTTTTATAGTTTCTTGGTTTTTTAGACACCTCTCTTTCTTTTTAAACCTTTTCTAAAACGTCTCTATGCATATTTCATGCGAAACGCCGTGAGAAATGCCACCCGTTGCTTGGTGATGCGCCAGGAAAACTTTTCGACATGCATTTTTTTTTGCTCTTCCCGCCTTTCACAACATTTTTTGAAACAAAAGGCAATGAGGAGCATTCGTATCGTCACGACGATCATTTTTTCGCTTTCGCCTTCTTTTTTTCTTTCTCAGCTGCTCTTTTTCCTTTTTTCTTACTAGCCTTCTCCTTGAAATAATGAGTTTCACCGCCTGACAGTTGTGAGTCTTTGTCGAGAGTTCTCTTTTTTTGAAAATTCCCACCCCAATTTTTTTCGAACTTTCAGAACTCCAGTTTTGTGAGAACCTTTCCGGCGGATATGATATACTTATTTTCATTCTCTTTTGATATATTTTTTGAACACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAAACAATACTTTATTCCTTCT</pcr_primer_p1>
		<pcr_primer_p2>AGGTTTAAAAAGAAAGAGAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCAAAACAATACTTTATTCCTTCTGCTCGTTTCCTCCTCTTTTCCTCTTTTTCTCGCAGATTCGCCGTTCCAATCTTTTCTATTCTTCTCCTTTCTCTTCGAGATTTCATTTCTACATGAGGCATTTTTTCTGCGTAATCCCATATTTCATTCTTTTCTCTTTTTTCTCCTTTTCAAAAGAGCGACGCGTGACACGTTTTGTTTTATAGTTTCTTGGTTTTTTAGACACCTCTCTTTCTTTTTAAACCT</canonical_amplicon>
		<polymorphic_amplicon>CCAAAACAATACTTTATTCCTTCTGCTCGTTTCCTCCTCTTTTCCTCTTTTTCTCGCAGATTCGCCGTTCCAATCTTTTCTATTCTTCTCCTTTCTCTTCGAGATTTCATTTCTACATGAGGCATTTTTTCTGCGTAATCCCATATTTCATTCTTTTCTCTTTTTTCTCYTTTTCAAAAGAGCGACGCGTGACACGTTTTGTTTTATAGTTTCTTGGTTTTTTAGACACCTCTCTTTCTTTTTAAACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20542</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1107748</contig_pos>
        <strand>+</strand>
        <context>TCTTTTTKCT[C/T]YTTTTCAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGGCATTTTTTCTGCGTAATCCCATATTTCATTCTTTTCTCTTTTTTCT</left_flank>
        <right_flank>CTTTTCAAAAGAGCGACGCGTGACACGTTTTGTTTTATAGTTTCTTGGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAAGCGTGGTCCATAGAGGAGGTGGAAAAAGGGGAGAGTGAGGGGGGGGGGGGTTTAGAAAAAAAGACGGCGGCGTTAAGAGCGGAAAAAAAGAAACATTAGTATCTCCTTTACTTGTCAATGCATTAATTCTGTTTTGTGTATGCTGTTTTTGCCGTTTCACATTCGCGTTATTTTTCTAGAAATTCCTAAGAATTGGAATTGGGAAAAGAATAGGATTAGTTTTTGAATTAGACTGGTGATGACAACATACGCAACATGAGAAAAAACAGAGCTTAGAGTATCAGCGTTGTCGATCAAAGCGTATTATGCGGCAAGTTAAGAGAGAAGCCAAAACAATACTTTATTCCTTCTGCTCGTTTCCTCCTCTTTTCCTCTTTTTCTCGCAGATTCGCCGTTCCAATCTTTTCTATTCTTCTCCTTTCTCTTCGAGATTTCATTTCTACATGAGGCATTTTTTCTGCGTAATCCCATATTTCATTCTTTTCTCTTTTTTCTCCTTTTCAAAAGAGCGACGCGTGACACGTTTTGTTTTATAGTTTCTTGGTTTTTTAGACACCTCTCTTTCTTTTTAAACCTTTTCTAAAACGTCTCTATGCATATTTCATGCGAAACGCCGTGAGAAATGCCACCCGTTGCTTGGTGATGCGCCAGGAAAACTTTTCGACATGCATTTTTTTTTGCTCTTCCCGCCTTTCACAACATTTTTTGAAACAAAAGGCAATGAGGAGCATTCGTATCGTCACGACGATCATTTTTTCGCTTTCGCCTTCTTTTTTTCTTTCTCAGCTGCTCTTTTTCCTTTTTTCTTACTAGCCTTCTCCTTGAAATAATGAGTTTCACCGCCTGACAGTTGTGAGTCTTTGTCGAGAGTTCTCTTTTTTTGAAAATTCCCACCCCAATTTTTTTCGAACTTTCAGAACTCCAGTTTTGTGAGAACCTTTCCGGCGGATATGATATACTTATTTTCATTCTCTTTTGATATATTTTTTGAACACT</canonical>
            <polymorphic>GTAAGCGTGGTCCATAGAGGAGGTGGAAAAAGGGGAGAGTGAGGGGGGGGGGGGTTTAGAAAAAAAGACGGCGGCGTTAAGAGCGGAAAAAAAGAAACATTAGTATCTCCTTTACTTGTCAATGCATTAATTCTGTTTTGTGTATGCTGTTTTTGCCGTTTCACATTCGCGTTATTTTTCTAGAAATTCCTAAGAATTGGAATTGGGAAAAGAATAGGATTAGTTTTTGAATTAGACTGGTGATGACAACATACGCAACATGAGAAAAAACAGAGCTTAGAGTATCAGCGTTGTCGATCAAAGCGTATTATGCGGCAAGTTAAGAGAGAAGCCAAAACAATACTTTATTCCTTCTGCTCGTTTCCTCCTCTTTTCCTCTTTTTCTCGCAGATTCGCCGTTCCAATCTTTTCTATTCTTCTCCTTTCTCTTCGAGATTTCATTTCTACATGAGGCATTTTTTCTGCGTAATCCCATATTTCATTCTTTTCTCTTTTTTCTYCTTTTCAAAAGAGCGACGCGTGACACGTTTTGTTTTATAGTTTCTTGGTTTTTTAGACACCTCTCTTTCTTTTTAAACCTTTTCTAAAACGTCTCTATGCATATTTCATGCGAAACGCCGTGAGAAATGCCACCCGTTGCTTGGTGATGCGCCAGGAAAACTTTTCGACATGCATTTTTTTTTGCTCTTCCCGCCTTTCACAACATTTTTTGAAACAAAAGGCAATGAGGAGCATTCGTATCGTCACGACGATCATTTTTTCGCTTTCGCCTTCTTTTTTTCTTTCTCAGCTGCTCTTTTTCCTTTTTTCTTACTAGCCTTCTCCTTGAAATAATGAGTTTCACCGCCTGACAGTTGTGAGTCTTTGTCGAGAGTTCTCTTTTTTTGAAAATTCCCACCCCAATTTTTTTCGAACTTTCAGAACTCCAGTTTTGTGAGAACCTTTCCGGCGGATATGATATACTTATTTTCATTCTCTTTTGATATATTTTTTGAACACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAAACAATACTTTATTCCTTCT</pcr_primer_p1>
		<pcr_primer_p2>AGGTTTAAAAAGAAAGAGAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCAAAACAATACTTTATTCCTTCTGCTCGTTTCCTCCTCTTTTCCTCTTTTTCTCGCAGATTCGCCGTTCCAATCTTTTCTATTCTTCTCCTTTCTCTTCGAGATTTCATTTCTACATGAGGCATTTTTTCTGCGTAATCCCATATTTCATTCTTTTCTCTTTTTTCTCCTTTTCAAAAGAGCGACGCGTGACACGTTTTGTTTTATAGTTTCTTGGTTTTTTAGACACCTCTCTTTCTTTTTAAACCT</canonical_amplicon>
		<polymorphic_amplicon>CCAAAACAATACTTTATTCCTTCTGCTCGTTTCCTCCTCTTTTCCTCTTTTTCTCGCAGATTCGCCGTTCCAATCTTTTCTATTCTTCTCCTTTCTCTTCGAGATTTCATTTCTACATGAGGCATTTTTTCTGCGTAATCCCATATTTCATTCTTTTCTCTTTTTTCTYCTTTTCAAAAGAGCGACGCGTGACACGTTTTGTTTTATAGTTTCTTGGTTTTTTAGACACCTCTCTTTCTTTTTAAACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20543</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1107745</contig_pos>
        <strand>+</strand>
        <context>TTCTCTTTTT[G/T]CTYYTTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATGAGGCATTTTTTCTGCGTAATCCCATATTTCATTCTTTTCTCTTTTT</left_flank>
        <right_flank>CTCCTTTTCAAAAGAGCGACGCGTGACACGTTTTGTTTTATAGTTTCTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGTAAGCGTGGTCCATAGAGGAGGTGGAAAAAGGGGAGAGTGAGGGGGGGGGGGGTTTAGAAAAAAAGACGGCGGCGTTAAGAGCGGAAAAAAAGAAACATTAGTATCTCCTTTACTTGTCAATGCATTAATTCTGTTTTGTGTATGCTGTTTTTGCCGTTTCACATTCGCGTTATTTTTCTAGAAATTCCTAAGAATTGGAATTGGGAAAAGAATAGGATTAGTTTTTGAATTAGACTGGTGATGACAACATACGCAACATGAGAAAAAACAGAGCTTAGAGTATCAGCGTTGTCGATCAAAGCGTATTATGCGGCAAGTTAAGAGAGAAGCCAAAACAATACTTTATTCCTTCTGCTCGTTTCCTCCTCTTTTCCTCTTTTTCTCGCAGATTCGCCGTTCCAATCTTTTCTATTCTTCTCCTTTCTCTTCGAGATTTCATTTCTACATGAGGCATTTTTTCTGCGTAATCCCATATTTCATTCTTTTCTCTTTTTTCTCCTTTTCAAAAGAGCGACGCGTGACACGTTTTGTTTTATAGTTTCTTGGTTTTTTAGACACCTCTCTTTCTTTTTAAACCTTTTCTAAAACGTCTCTATGCATATTTCATGCGAAACGCCGTGAGAAATGCCACCCGTTGCTTGGTGATGCGCCAGGAAAACTTTTCGACATGCATTTTTTTTTGCTCTTCCCGCCTTTCACAACATTTTTTGAAACAAAAGGCAATGAGGAGCATTCGTATCGTCACGACGATCATTTTTTCGCTTTCGCCTTCTTTTTTTCTTTCTCAGCTGCTCTTTTTCCTTTTTTCTTACTAGCCTTCTCCTTGAAATAATGAGTTTCACCGCCTGACAGTTGTGAGTCTTTGTCGAGAGTTCTCTTTTTTTGAAAATTCCCACCCCAATTTTTTTCGAACTTTCAGAACTCCAGTTTTGTGAGAACCTTTCCGGCGGATATGATATACTTATTTTCATTCTCTTTTGATATATTTTTTGAAC</canonical>
            <polymorphic>CTTGTAAGCGTGGTCCATAGAGGAGGTGGAAAAAGGGGAGAGTGAGGGGGGGGGGGGTTTAGAAAAAAAGACGGCGGCGTTAAGAGCGGAAAAAAAGAAACATTAGTATCTCCTTTACTTGTCAATGCATTAATTCTGTTTTGTGTATGCTGTTTTTGCCGTTTCACATTCGCGTTATTTTTCTAGAAATTCCTAAGAATTGGAATTGGGAAAAGAATAGGATTAGTTTTTGAATTAGACTGGTGATGACAACATACGCAACATGAGAAAAAACAGAGCTTAGAGTATCAGCGTTGTCGATCAAAGCGTATTATGCGGCAAGTTAAGAGAGAAGCCAAAACAATACTTTATTCCTTCTGCTCGTTTCCTCCTCTTTTCCTCTTTTTCTCGCAGATTCGCCGTTCCAATCTTTTCTATTCTTCTCCTTTCTCTTCGAGATTTCATTTCTACATGAGGCATTTTTTCTGCGTAATCCCATATTTCATTCTTTTCTCTTTTTKCTCCTTTTCAAAAGAGCGACGCGTGACACGTTTTGTTTTATAGTTTCTTGGTTTTTTAGACACCTCTCTTTCTTTTTAAACCTTTTCTAAAACGTCTCTATGCATATTTCATGCGAAACGCCGTGAGAAATGCCACCCGTTGCTTGGTGATGCGCCAGGAAAACTTTTCGACATGCATTTTTTTTTGCTCTTCCCGCCTTTCACAACATTTTTTGAAACAAAAGGCAATGAGGAGCATTCGTATCGTCACGACGATCATTTTTTCGCTTTCGCCTTCTTTTTTTCTTTCTCAGCTGCTCTTTTTCCTTTTTTCTTACTAGCCTTCTCCTTGAAATAATGAGTTTCACCGCCTGACAGTTGTGAGTCTTTGTCGAGAGTTCTCTTTTTTTGAAAATTCCCACCCCAATTTTTTTCGAACTTTCAGAACTCCAGTTTTGTGAGAACCTTTCCGGCGGATATGATATACTTATTTTCATTCTCTTTTGATATATTTTTTGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAAACAATACTTTATTCCTTCT</pcr_primer_p1>
		<pcr_primer_p2>AGGTTTAAAAAGAAAGAGAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCAAAACAATACTTTATTCCTTCTGCTCGTTTCCTCCTCTTTTCCTCTTTTTCTCGCAGATTCGCCGTTCCAATCTTTTCTATTCTTCTCCTTTCTCTTCGAGATTTCATTTCTACATGAGGCATTTTTTCTGCGTAATCCCATATTTCATTCTTTTCTCTTTTTTCTCCTTTTCAAAAGAGCGACGCGTGACACGTTTTGTTTTATAGTTTCTTGGTTTTTTAGACACCTCTCTTTCTTTTTAAACCT</canonical_amplicon>
		<polymorphic_amplicon>CCAAAACAATACTTTATTCCTTCTGCTCGTTTCCTCCTCTTTTCCTCTTTTTCTCGCAGATTCGCCGTTCCAATCTTTTCTATTCTTCTCCTTTCTCTTCGAGATTTCATTTCTACATGAGGCATTTTTTCTGCGTAATCCCATATTTCATTCTTTTCTCTTTTTKCTCCTTTTCAAAAGAGCGACGCGTGACACGTTTTGTTTTATAGTTTCTTGGTTTTTTAGACACCTCTCTTTCTTTTTAAACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20544</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1107451</contig_pos>
        <strand>+</strand>
        <context>AGAATTGGAA[C/T]TGGGAAAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGCCGTTTCACATTCGCGTTATTTTTCTAGAAATTCCTAAGAATTGGAA</left_flank>
        <right_flank>TGGGAAAAGAATAGGATTAGTTTTTGAATTAGACTGGTGATGACAACATA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGACCATCTATTGTCACATGAGCCAACGTGTCCATGTCATCCATAAAATATTAATTGATGAGCAATGTTTTTAGAGCGGTCACAAACCACCATTTTAAAAGCAAAACTTGAGAGAGAGAGAAAGAGAGAAAAGAAGAAAATCGAAACGAAGAATGAATAGTGCATTTGTCTGAGGCATCATTAATCCACAAGTCCCCTCCGTGTTGCATGTGAATTCATCCGTACCTCTTCCTCCCAAAAAACATTCATGTTTTGCATTCTGAATCCATCAGAATGCACATGTCCCCGAAATCTTGTAAGCGTGGTCCATAGAGGAGGTGGAAAAAGGGGAGAGTGAGGGGGGGGGGGGTTTAGAAAAAAAGACGGCGGCGTTAAGAGCGGAAAAAAAGAAACATTAGTATCTCCTTTACTTGTCAATGCATTAATTCTGTTTTGTGTATGCTGTTTTTGCCGTTTCACATTCGCGTTATTTTTCTAGAAATTCCTAAGAATTGGAATTGGGAAAAGAATAGGATTAGTTTTTGAATTAGACTGGTGATGACAACATACGCAACATGAGAAAAAACAGAGCTTAGAGTATCAGCGTTGTCGATCAAAGCGTATTATGCGGCAAGTTAAGAGAGAAGCCAAAACAATACTTTATTCCTTCTGCTCGTTTCCTCCTCTTTTCCTCTTTTTCTCGCAGATTCGCCGTTCCAATCTTTTCTATTCTTCTCCTTTCTCTTCGAGATTTCATTTCTACATGAGGCATTTTTTCTGCGTAATCCCATATTTCATTCTTTTCTCTTTTTTCTCCTTTTCAAAAGAGCGACGCGTGACACGTTTTGTTTTATAGTTTCTTGGTTTTTTAGACACCTCTCTTTCTTTTTAAACCTTTTCTAAAACGTCTCTATGCATATTTCATGCGAAACGCCGTGAGAAATGCCACCCGTTGCTTGGTGATGCGCCAGGAAAACTTTTCGACATGCATTTTTTTTTGCTCTTCCCGCCTTTCACAA</canonical>
            <polymorphic>AATGACCATCTATTGTCACATGAGCCAACGTGTCCATGTCATCCATAAAATATTAATTGATGAGCAATGTTTTTAGAGCGGTCACAAACCACCATTTTAAAAGCAAAACTTGAGAGAGAGAGAAAGAGAGAAAAGAAGAAAATCGAAACGAAGAATGAATAGTGCATTTGTCTGAGGCATCATTAATCCACAAGTCCCCTCCGTGTTGCATGTGAATTCATCCGTACCTCTTCCTCCCAAAAAACATTCATGTTTTGCATTCTGAATCCATCAGAATGCACATGTCCCCGAAATCTTGTAAGCGTGGTCCATAGAGGAGGTGGAAAAAGGGGAGAGTGAGGGGGGGGGGGGTTTAGAAAAAAAGACGGCGGCGTTAAGAGCGGAAAAAAAGAAACATTAGTATCTCCTTTACTTGTCAATGCATTAATTCTGTTTTGTGTATGCTGTTTTTGCCGTTTCACATTCGCGTTATTTTTCTAGAAATTCCTAAGAATTGGAAYTGGGAAAAGAATAGGATTAGTTTTTGAATTAGACTGGTGATGACAACATACGCAACATGAGAAAAAACAGAGCTTAGAGTATCAGCGTTGTCGATCAAAGCGTATTATGCGGCAAGTTAAGAGAGAAGCCAAAACAATACTTTATTCCTTCTGCTCGTTTCCTCCTCTTTTCCTCTTTTTCTCGCAGATTCGCCGTTCCAATCTTTTCTATTCTTCTCCTTTCTCTTCGAGATTTCATTTCTACATGAGGCATTTTTTCTGCGTAATCCCATATTTCATTCTTTTCTCTTTTTTCTCCTTTTCAAAAGAGCGACGCGTGACACGTTTTGTTTTATAGTTTCTTGGTTTTTTAGACACCTCTCTTTCTTTTTAAACCTTTTCTAAAACGTCTCTATGCATATTTCATGCGAAACGCCGTGAGAAATGCCACCCGTTGCTTGGTGATGCGCCAGGAAAACTTTTCGACATGCATTTTTTTTTGCTCTTCCCGCCTTTCACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>474 211 160 56 54 29 10 6</canonical_bands>
                <polymorphic_bands>474 211 160 56 54 35 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGCATTAATTCTGTTTTGTGT</pcr_primer_p1>
		<pcr_primer_p2>AACGAGCAGAAGGAATAAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AATGCATTAATTCTGTTTTGTGTATGCTGTTTTTGCCGTTTCACATTCGCGTTATTTTTCTAGAAATTCCTAAGAATTGGAATTGGGAAAAGAATAGGATTAGTTTTTGAATTAGACTGGTGATGACAACATACGCAACATGAGAAAAAACAGAGCTTAGAGTATCAGCGTTGTCGATCAAAGCGTATTATGCGGCAAGTTAAGAGAGAAGCCAAAACAATACTTTATTCCTTCTGCTCGTT</canonical_amplicon>
		<polymorphic_amplicon>AATGCATTAATTCTGTTTTGTGTATGCTGTTTTTGCCGTTTCACATTCGCGTTATTTTTCTAGAAATTCCTAAGAATTGGAAYTGGGAAAAGAATAGGATTAGTTTTTGAATTAGACTGGTGATGACAACATACGCAACATGAGAAAAAACAGAGCTTAGAGTATCAGCGTTGTCGATCAAAGCGTATTATGCGGCAAGTTAAGAGAGAAGCCAAAACAATACTTTATTCCTTCTGCTCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20545</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1107440</contig_pos>
        <strand>+</strand>
        <context>AGAAATTCCT[A/G]AGAATTGGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTATGCTGTTTTTGCCGTTTCACATTCGCGTTATTTTTCTAGAAATTCCT</left_flank>
        <right_flank>AGAATTGGAATTGGGAAAAGAATAGGATTAGTTTTTGAATTAGACTGGTG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATTCTAGAAAATGACCATCTATTGTCACATGAGCCAACGTGTCCATGTCATCCATAAAATATTAATTGATGAGCAATGTTTTTAGAGCGGTCACAAACCACCATTTTAAAAGCAAAACTTGAGAGAGAGAGAAAGAGAGAAAAGAAGAAAATCGAAACGAAGAATGAATAGTGCATTTGTCTGAGGCATCATTAATCCACAAGTCCCCTCCGTGTTGCATGTGAATTCATCCGTACCTCTTCCTCCCAAAAAACATTCATGTTTTGCATTCTGAATCCATCAGAATGCACATGTCCCCGAAATCTTGTAAGCGTGGTCCATAGAGGAGGTGGAAAAAGGGGAGAGTGAGGGGGGGGGGGGTTTAGAAAAAAAGACGGCGGCGTTAAGAGCGGAAAAAAAGAAACATTAGTATCTCCTTTACTTGTCAATGCATTAATTCTGTTTTGTGTATGCTGTTTTTGCCGTTTCACATTCGCGTTATTTTTCTAGAAATTCCTAAGAATTGGAATTGGGAAAAGAATAGGATTAGTTTTTGAATTAGACTGGTGATGACAACATACGCAACATGAGAAAAAACAGAGCTTAGAGTATCAGCGTTGTCGATCAAAGCGTATTATGCGGCAAGTTAAGAGAGAAGCCAAAACAATACTTTATTCCTTCTGCTCGTTTCCTCCTCTTTTCCTCTTTTTCTCGCAGATTCGCCGTTCCAATCTTTTCTATTCTTCTCCTTTCTCTTCGAGATTTCATTTCTACATGAGGCATTTTTTCTGCGTAATCCCATATTTCATTCTTTTCTCTTTTTTCTCCTTTTCAAAAGAGCGACGCGTGACACGTTTTGTTTTATAGTTTCTTGGTTTTTTAGACACCTCTCTTTCTTTTTAAACCTTTTCTAAAACGTCTCTATGCATATTTCATGCGAAACGCCGTGAGAAATGCCACCCGTTGCTTGGTGATGCGCCAGGAAAACTTTTCGACATGCATTTTTTTTTGCTCTTCCC</canonical>
            <polymorphic>GTATTCTAGAAAATGACCATCTATTGTCACATGAGCCAACGTGTCCATGTCATCCATAAAATATTAATTGATGAGCAATGTTTTTAGAGCGGTCACAAACCACCATTTTAAAAGCAAAACTTGAGAGAGAGAGAAAGAGAGAAAAGAAGAAAATCGAAACGAAGAATGAATAGTGCATTTGTCTGAGGCATCATTAATCCACAAGTCCCCTCCGTGTTGCATGTGAATTCATCCGTACCTCTTCCTCCCAAAAAACATTCATGTTTTGCATTCTGAATCCATCAGAATGCACATGTCCCCGAAATCTTGTAAGCGTGGTCCATAGAGGAGGTGGAAAAAGGGGAGAGTGAGGGGGGGGGGGGTTTAGAAAAAAAGACGGCGGCGTTAAGAGCGGAAAAAAAGAAACATTAGTATCTCCTTTACTTGTCAATGCATTAATTCTGTTTTGTGTATGCTGTTTTTGCCGTTTCACATTCGCGTTATTTTTCTAGAAATTCCTRAGAATTGGAATTGGGAAAAGAATAGGATTAGTTTTTGAATTAGACTGGTGATGACAACATACGCAACATGAGAAAAAACAGAGCTTAGAGTATCAGCGTTGTCGATCAAAGCGTATTATGCGGCAAGTTAAGAGAGAAGCCAAAACAATACTTTATTCCTTCTGCTCGTTTCCTCCTCTTTTCCTCTTTTTCTCGCAGATTCGCCGTTCCAATCTTTTCTATTCTTCTCCTTTCTCTTCGAGATTTCATTTCTACATGAGGCATTTTTTCTGCGTAATCCCATATTTCATTCTTTTCTCTTTTTTCTCCTTTTCAAAAGAGCGACGCGTGACACGTTTTGTTTTATAGTTTCTTGGTTTTTTAGACACCTCTCTTTCTTTTTAAACCTTTTCTAAAACGTCTCTATGCATATTTCATGCGAAACGCCGTGAGAAATGCCACCCGTTGCTTGGTGATGCGCCAGGAAAACTTTTCGACATGCATTTTTTTTTGCTCTTCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGCATTAATTCTGTTTTGTGT</pcr_primer_p1>
		<pcr_primer_p2>AACGAGCAGAAGGAATAAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AATGCATTAATTCTGTTTTGTGTATGCTGTTTTTGCCGTTTCACATTCGCGTTATTTTTCTAGAAATTCCTAAGAATTGGAATTGGGAAAAGAATAGGATTAGTTTTTGAATTAGACTGGTGATGACAACATACGCAACATGAGAAAAAACAGAGCTTAGAGTATCAGCGTTGTCGATCAAAGCGTATTATGCGGCAAGTTAAGAGAGAAGCCAAAACAATACTTTATTCCTTCTGCTCGTT</canonical_amplicon>
		<polymorphic_amplicon>AATGCATTAATTCTGTTTTGTGTATGCTGTTTTTGCCGTTTCACATTCGCGTTATTTTTCTAGAAATTCCTRAGAATTGGAATTGGGAAAAGAATAGGATTAGTTTTTGAATTAGACTGGTGATGACAACATACGCAACATGAGAAAAAACAGAGCTTAGAGTATCAGCGTTGTCGATCAAAGCGTATTATGCGGCAAGTTAAGAGAGAAGCCAAAACAATACTTTATTCCTTCTGCTCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20546</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1107280</contig_pos>
        <strand>+</strand>
        <context>GGTGRAAAAA[A/G]GGGAGAGTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACATGTCCCCGAAATCTTGTAAGCGTGGTCCATAGAGGAGGTGGAAAAA</left_flank>
        <right_flank>GGGAGAGTGAGGGGGGGGGGGGTTTAGAAAAAAAGACGGCGGCGTTAAGA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTTAGATTTTTCAGGTGTTTCGTACTCCCGAATAGAAGATTTTGTACCCCAATGACCCCTAAATTGTGGTACCCTCCGAATTATTTGCCTCTGGTTCCTACTTTTGTTTTAATTAAAAAAGTTATTCACAGAGGATATTCAAAAATTCTGTCCTCTTGTATTCTAGAAAATGACCATCTATTGTCACATGAGCCAACGTGTCCATGTCATCCATAAAATATTAATTGATGAGCAATGTTTTTAGAGCGGTCACAAACCACCATTTTAAAAGCAAAACTTGAGAGAGAGAGAAAGAGAGAAAAGAAGAAAATCGAAACGAAGAATGAATAGTGCATTTGTCTGAGGCATCATTAATCCACAAGTCCCCTCCGTGTTGCATGTGAATTCATCCGTACCTCTTCCTCCCAAAAAACATTCATGTTTTGCATTCTGAATCCATCAGAATGCACATGTCCCCGAAATCTTGTAAGCGTGGTCCATAGAGGAGGTGGAAAAAGGGGAGAGTGAGGGGGGGGGGGGTTTAGAAAAAAAGACGGCGGCGTTAAGAGCGGAAAAAAAGAAACATTAGTATCTCCTTTACTTGTCAATGCATTAATTCTGTTTTGTGTATGCTGTTTTTGCCGTTTCACATTCGCGTTATTTTTCTAGAAATTCCTAAGAATTGGAATTGGGAAAAGAATAGGATTAGTTTTTGAATTAGACTGGTGATGACAACATACGCAACATGAGAAAAAACAGAGCTTAGAGTATCAGCGTTGTCGATCAAAGCGTATTATGCGGCAAGTTAAGAGAGAAGCCAAAACAATACTTTATTCCTTCTGCTCGTTTCCTCCTCTTTTCCTCTTTTTCTCGCAGATTCGCCGTTCCAATCTTTTCTATTCTTCTCCTTTCTCTTCGAGATTTCATTTCTACATGAGGCATTTTTTCTGCGTAATCCCATATTTCATTCTTTTCTCTTTTTTCTCCTTTTCAAAAGAGCGACGCGTGACACGTTTTG</canonical>
            <polymorphic>AAGTTTAGATTTTTCAGGTGTTTCGTACTCCCGAATAGAAGATTTTGTACCCCAATGACCCCTAAATTGTGGTACCCTCCGAATTATTTGCCTCTGGTTCCTACTTTTGTTTTAATTAAAAAAGTTATTCACAGAGGATATTCAAAAATTCTGTCCTCTTGTATTCTAGAAAATGACCATCTATTGTCACATGAGCCAACGTGTCCATGTCATCCATAAAATATTAATTGATGAGCAATGTTTTTAGAGCGGTCACAAACCACCATTTTAAAAGCAAAACTTGAGAGAGAGAGAAAGAGAGAAAAGAAGAAAATCGAAACGAAGAATGAATAGTGCATTTGTCTGAGGCATCATTAATCCACAAGTCCCCTCCGTGTTGCATGTGAATTCATCCGTACCTCTTCCTCCCAAAAAACATTCATGTTTTGCATTCTGAATCCATCAGAATGCACATGTCCCCGAAATCTTGTAAGCGTGGTCCATAGAGGAGGTGGAAAAARGGGAGAGTGAGGGGGGGGGGGGTTTAGAAAAAAAGACGGCGGCGTTAAGAGCGGAAAAAAAGAAACATTAGTATCTCCTTTACTTGTCAATGCATTAATTCTGTTTTGTGTATGCTGTTTTTGCCGTTTCACATTCGCGTTATTTTTCTAGAAATTCCTAAGAATTGGAATTGGGAAAAGAATAGGATTAGTTTTTGAATTAGACTGGTGATGACAACATACGCAACATGAGAAAAAACAGAGCTTAGAGTATCAGCGTTGTCGATCAAAGCGTATTATGCGGCAAGTTAAGAGAGAAGCCAAAACAATACTTTATTCCTTCTGCTCGTTTCCTCCTCTTTTCCTCTTTTTCTCGCAGATTCGCCGTTCCAATCTTTTCTATTCTTCTCCTTTCTCTTCGAGATTTCATTTCTACATGAGGCATTTTTTCTGCGTAATCCCATATTTCATTCTTTTCTCTTTTTTCTCCTTTTCAAAAGAGCGACGCGTGACACGTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGCATCATTAATCCACAAGT</pcr_primer_p1>
		<pcr_primer_p2>GCATTGACAAGTAAAGGAGATAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGGCATCATTAATCCACAAGTCCCCTCCGTGTTGCATGTGAATTCATCCGTACCTCTTCCTCCCAAAAAACATTCATGTTTTGCATTCTGAATCCATCAGAATGCACATGTCCCCGAAATCTTGTAAGCGTGGTCCATAGAGGAGGTGGAAAAAGGGGAGAGTGAGGGGGGGGGGGGTTTAGAAAAAAAGACGGCGGCGTTAAGAGCGGAAAAAAAGAAACATTAGTATCTCCTTTACTTGTCAATGC</canonical_amplicon>
		<polymorphic_amplicon>AGGCATCATTAATCCACAAGTCCCCTCCGTGTTGCATGTGAATTCATCCGTACCTCTTCCTCCCAAAAAACATTCATGTTTTGCATTCTGAATCCATCAGAATGCACATGTCCCCGAAATCTTGTAAGCGTGGTCCATAGAGGAGGTGGAAAAARGGGAGAGTGAGGGGGGGGGGGGTTTAGAAAAAAAGACGGCGGCGTTAAGAGCGGAAAAAAAGAAACATTAGTATCTCCTTTACTTGTCAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20547</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1107274</contig_pos>
        <strand>+</strand>
        <context>AGAGGAGGTG[A/G]AAAAARGGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAATGCACATGTCCCCGAAATCTTGTAAGCGTGGTCCATAGAGGAGGTG</left_flank>
        <right_flank>AAAAAGGGGAGAGTGAGGGGGGGGGGGGTTTAGAAAAAAAGACGGCGGCG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATACGAAGTTTAGATTTTTCAGGTGTTTCGTACTCCCGAATAGAAGATTTTGTACCCCAATGACCCCTAAATTGTGGTACCCTCCGAATTATTTGCCTCTGGTTCCTACTTTTGTTTTAATTAAAAAAGTTATTCACAGAGGATATTCAAAAATTCTGTCCTCTTGTATTCTAGAAAATGACCATCTATTGTCACATGAGCCAACGTGTCCATGTCATCCATAAAATATTAATTGATGAGCAATGTTTTTAGAGCGGTCACAAACCACCATTTTAAAAGCAAAACTTGAGAGAGAGAGAAAGAGAGAAAAGAAGAAAATCGAAACGAAGAATGAATAGTGCATTTGTCTGAGGCATCATTAATCCACAAGTCCCCTCCGTGTTGCATGTGAATTCATCCGTACCTCTTCCTCCCAAAAAACATTCATGTTTTGCATTCTGAATCCATCAGAATGCACATGTCCCCGAAATCTTGTAAGCGTGGTCCATAGAGGAGGTGGAAAAAGGGGAGAGTGAGGGGGGGGGGGGTTTAGAAAAAAAGACGGCGGCGTTAAGAGCGGAAAAAAAGAAACATTAGTATCTCCTTTACTTGTCAATGCATTAATTCTGTTTTGTGTATGCTGTTTTTGCCGTTTCACATTCGCGTTATTTTTCTAGAAATTCCTAAGAATTGGAATTGGGAAAAGAATAGGATTAGTTTTTGAATTAGACTGGTGATGACAACATACGCAACATGAGAAAAAACAGAGCTTAGAGTATCAGCGTTGTCGATCAAAGCGTATTATGCGGCAAGTTAAGAGAGAAGCCAAAACAATACTTTATTCCTTCTGCTCGTTTCCTCCTCTTTTCCTCTTTTTCTCGCAGATTCGCCGTTCCAATCTTTTCTATTCTTCTCCTTTCTCTTCGAGATTTCATTTCTACATGAGGCATTTTTTCTGCGTAATCCCATATTTCATTCTTTTCTCTTTTTTCTCCTTTTCAAAAGAGCGACGCGTGACAC</canonical>
            <polymorphic>GATACGAAGTTTAGATTTTTCAGGTGTTTCGTACTCCCGAATAGAAGATTTTGTACCCCAATGACCCCTAAATTGTGGTACCCTCCGAATTATTTGCCTCTGGTTCCTACTTTTGTTTTAATTAAAAAAGTTATTCACAGAGGATATTCAAAAATTCTGTCCTCTTGTATTCTAGAAAATGACCATCTATTGTCACATGAGCCAACGTGTCCATGTCATCCATAAAATATTAATTGATGAGCAATGTTTTTAGAGCGGTCACAAACCACCATTTTAAAAGCAAAACTTGAGAGAGAGAGAAAGAGAGAAAAGAAGAAAATCGAAACGAAGAATGAATAGTGCATTTGTCTGAGGCATCATTAATCCACAAGTCCCCTCCGTGTTGCATGTGAATTCATCCGTACCTCTTCCTCCCAAAAAACATTCATGTTTTGCATTCTGAATCCATCAGAATGCACATGTCCCCGAAATCTTGTAAGCGTGGTCCATAGAGGAGGTGRAAAAAGGGGAGAGTGAGGGGGGGGGGGGTTTAGAAAAAAAGACGGCGGCGTTAAGAGCGGAAAAAAAGAAACATTAGTATCTCCTTTACTTGTCAATGCATTAATTCTGTTTTGTGTATGCTGTTTTTGCCGTTTCACATTCGCGTTATTTTTCTAGAAATTCCTAAGAATTGGAATTGGGAAAAGAATAGGATTAGTTTTTGAATTAGACTGGTGATGACAACATACGCAACATGAGAAAAAACAGAGCTTAGAGTATCAGCGTTGTCGATCAAAGCGTATTATGCGGCAAGTTAAGAGAGAAGCCAAAACAATACTTTATTCCTTCTGCTCGTTTCCTCCTCTTTTCCTCTTTTTCTCGCAGATTCGCCGTTCCAATCTTTTCTATTCTTCTCCTTTCTCTTCGAGATTTCATTTCTACATGAGGCATTTTTTCTGCGTAATCCCATATTTCATTCTTTTCTCTTTTTTCTCCTTTTCAAAAGAGCGACGCGTGACAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>XcmI</enzyme>
                </isoschizomers>
                <canonical_bands>507 493</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGCATCATTAATCCACAAGT</pcr_primer_p1>
		<pcr_primer_p2>GCATTGACAAGTAAAGGAGATAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGGCATCATTAATCCACAAGTCCCCTCCGTGTTGCATGTGAATTCATCCGTACCTCTTCCTCCCAAAAAACATTCATGTTTTGCATTCTGAATCCATCAGAATGCACATGTCCCCGAAATCTTGTAAGCGTGGTCCATAGAGGAGGTGGAAAAAGGGGAGAGTGAGGGGGGGGGGGGTTTAGAAAAAAAGACGGCGGCGTTAAGAGCGGAAAAAAAGAAACATTAGTATCTCCTTTACTTGTCAATGC</canonical_amplicon>
		<polymorphic_amplicon>AGGCATCATTAATCCACAAGTCCCCTCCGTGTTGCATGTGAATTCATCCGTACCTCTTCCTCCCAAAAAACATTCATGTTTTGCATTCTGAATCCATCAGAATGCACATGTCCCCGAAATCTTGTAAGCGTGGTCCATAGAGGAGGTGRAAAAAGGGGAGAGTGAGGGGGGGGGGGGTTTAGAAAAAAAGACGGCGGCGTTAAGAGCGGAAAAAAAGAAACATTAGTATCTCCTTTACTTGTCAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20551</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1137208</contig_pos>
        <strand>+</strand>
        <context>GACGGGGGGA[A/C]GGTGGGACGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGA</left_flank>
        <right_flank>GGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCAGCACGGGTGGGTACT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGTTTGGAAGATGGTGTGTGAGCAGCACCGGTGGGTACTGTAGGTAGGGAAGAACTAGTCACGAGCAGAGAAAGAAAAAGATTCCCATTTGGATCGATGGAAAAACAGTCCTTCTCTGCTCTTCCACCCGTCTCCCCTCGTGCCACCCACTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGGCGGGGGAACGGTGGGACGGATGGAGGAGAGATGGTGTCTAATTGGGGTAAGACGGGGGACGGCGGGATGGGTTTGGAAGATGGTGTGTGAGCAGCACCGGTGGGTACTGTAGGTAGGGAAGAACTAGTCACGAGCAGAGAAAGAAAAAGATTCCCATTTGGATCGATGGAAAGACAGTCCTTCTCTGCTCTTCCACCCGTCTCCTTTCGTGCCACCCAGTATGTTTCTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGAAGGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCAGCACGGGTGGGTACTGTAGAGTGAATCAACACTCTAGATGGACACCCTAGACGGAACTTTGAACATCCTAGAATATAGTTTGAATATGAAAATAGATATTTGAAAACTCTAAACGACGATTCGATTAGAAATGTTTCAAACTCCCAGTCGAGAGTTTATAGTTTATGGTTTGGTCTGTGTGGTGAGGGTAGCATATTTATCAGCCAACTTTCTGAAAACTTCATAAAATTGTTTCGAGAACTCAACTAAGCTCAAAAGTATCTGCTTCACGTTGAAGCTAAGTTTTAATAAGCTATTATAAGTTTTAAAAATGGCTAGCGGCTCAAGGAGTTTCTGATGCTCTTAGATTTTTCCCTAAAGAACTGACGGTGTGGTCCACGGCTGCCTAACTACTGCGTGAAAATGTTTTTCTAGTTCCAAAGTTTCAGTAGTTCGATCGAAGGAAAAGCAGACCCCCTCTGCCTT</canonical>
            <polymorphic>TGGGTTTGGAAGATGGTGTGTGAGCAGCACCGGTGGGTACTGTAGGTAGGGAAGAACTAGTCACGAGCAGAGAAAGAAAAAGATTCCCATTTGGATCGATGGAAAAACAGTCCTTCTCTGCTCTTCCACCCGTCTCCCCTCGTGCCACCCACTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGGCGGGGGAACGGTGGGACGGATGGAGGAGAGATGGTGTCTAATTGGGGTAAGACGGGGGACGGCGGGATGGGTTTGGAAGATGGTGTGTGAGCAGCACCGGTGGGTACTGTAGGTAGGGAAGAACTAGTCACGAGCAGAGAAAGAAAAAGATTCCCATTTGGATCGATGGAAAGACAGTCCTTCTCTGCTCTTCCACCCGTCTCCTTTCGTGCCACCCAGTATGTTTCTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGAMGGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCAGCACGGGTGGGTACTGTAGAGTGAATCAACACTCTAGATGGACACCCTAGACGGAACTTTGAACATCCTAGAATATAGTTTGAATATGAAAATAGATATTTGAAAACTCTAAACGACGATTCGATTAGAAATGTTTCAAACTCCCAGTCGAGAGTTTATAGTTTATGGTTTGGTCTGTGTGGTGAGGGTAGCATATTTATCAGCCAACTTTCTGAAAACTTCATAAAATTGTTTCGAGAACTCAACTAAGCTCAAAAGTATCTGCTTCACGTTGAAGCTAAGTTTTAATAAGCTATTATAAGTTTTAAAAATGGCTAGCGGCTCAAGGAGTTTCTGATGCTCTTAGATTTTTCCCTAAAGAACTGACGGTGTGGTCCACGGCTGCCTAACTACTGCGTGAAAATGTTTTTCTAGTTCCAAAGTTTCAGTAGTTCGATCGAAGGAAAAGCAGACCCCCTCTGCCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAACTAGTCACGAGCAGAGA</pcr_primer_p1>
		<pcr_primer_p2>GTGTCCATCTAGAGTGTTGATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAACTAGTCACGAGCAGAGAAAGAAAAAGATTCCCATTTGGATCGATGGAAAAACAGTCCTTCTCTGCTCTTCCACCCGTCTCCCCTCGTGCCACCCACTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGGCGGGGGAACGGTGGGACGGATGGAGGAGAGATGGTGTCTAATTGGGGTAAGACGGGGGACGGCGGGATGGGTTTGGAAGATGGTGTGTGAGCAGCACCGGTGGGTACTGTAGGTAGGGAAGAACTAGTCACGAGCAGAGAAAGAAAAAGATTCCCATTTGGATCGATGGAAAGACAGTCCTTCTCTGCTCTTCCACCCGTCTCCTTTCGTGCCACCCAGTATGTTTCTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGAAGGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCAGCACGGGTGGGTACTGTAGAGTGAATCAACACTCTAGATGGACAC</canonical_amplicon>
		<polymorphic_amplicon>AAGAACTAGTCACGAGCAGAGAAAGAAAAAGATTCCCATTTGGATCGATGGAAAAACAGTCCTTCTCTGCTCTTCCACCCGTCTCCCCTCGTGCCACCCACTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGGCGGGGGAACGGTGGGACGGATGGAGGAGAGATGGTGTCTAATTGGGGTAAGACGGGGGACGGCGGGATGGGTTTGGAAGATGGTGTGTGAGCAGCACCGGTGGGTACTGTAGGTAGGGAAGAACTAGTCACGAGCAGAGAAAGAAAAAGATTCCCATTTGGATCGATGGAAAGACAGTCCTTCTCTGCTCTTCCACCCGTCTCCTTTCGTGCCACCCAGTATGTTTCTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGAMGGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCAGCACGGGTGGGTACTGTAGAGTGAATCAACACTCTAGATGGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20552</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1137295</contig_pos>
        <strand>+</strand>
        <context>ACACCCTAGA[A/C]GGAACTTTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CACGGGTGGGTACTGTAGAGTGAATCAACACTCTAGATGGACACCCTAGA</left_flank>
        <right_flank>GGAACTTTGAACATCCTAGAATATAGTTTGAATATGAAAATAGATATTTG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTGGATCGATGGAAAAACAGTCCTTCTCTGCTCTTCCACCCGTCTCCCCTCGTGCCACCCACTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGGCGGGGGAACGGTGGGACGGATGGAGGAGAGATGGTGTCTAATTGGGGTAAGACGGGGGACGGCGGGATGGGTTTGGAAGATGGTGTGTGAGCAGCACCGGTGGGTACTGTAGGTAGGGAAGAACTAGTCACGAGCAGAGAAAGAAAAAGATTCCCATTTGGATCGATGGAAAGACAGTCCTTCTCTGCTCTTCCACCCGTCTCCTTTCGTGCCACCCAGTATGTTTCTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGAAGGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCAGCACGGGTGGGTACTGTAGAGTGAATCAACACTCTAGATGGACACCCTAGACGGAACTTTGAACATCCTAGAATATAGTTTGAATATGAAAATAGATATTTGAAAACTCTAAACGACGATTCGATTAGAAATGTTTCAAACTCCCAGTCGAGAGTTTATAGTTTATGGTTTGGTCTGTGTGGTGAGGGTAGCATATTTATCAGCCAACTTTCTGAAAACTTCATAAAATTGTTTCGAGAACTCAACTAAGCTCAAAAGTATCTGCTTCACGTTGAAGCTAAGTTTTAATAAGCTATTATAAGTTTTAAAAATGGCTAGCGGCTCAAGGAGTTTCTGATGCTCTTAGATTTTTCCCTAAAGAACTGACGGTGTGGTCCACGGCTGCCTAACTACTGCGTGAAAATGTTTTTCTAGTTCCAAAGTTTCAGTAGTTCGATCGAAGGAAAAGCAGACCCCCTCTGCCTTTACACCCGTCTCCCCTCGTGTCACCTTTTATGTTTTTGAGTTGCAACGTTCAAAGTTTGTCTAATTGGGGGACGGCGGGTCGGATGG</canonical>
            <polymorphic>CATTTGGATCGATGGAAAAACAGTCCTTCTCTGCTCTTCCACCCGTCTCCCCTCGTGCCACCCACTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGGCGGGGGAACGGTGGGACGGATGGAGGAGAGATGGTGTCTAATTGGGGTAAGACGGGGGACGGCGGGATGGGTTTGGAAGATGGTGTGTGAGCAGCACCGGTGGGTACTGTAGGTAGGGAAGAACTAGTCACGAGCAGAGAAAGAAAAAGATTCCCATTTGGATCGATGGAAAGACAGTCCTTCTCTGCTCTTCCACCCGTCTCCTTTCGTGCCACCCAGTATGTTTCTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGAAGGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCAGCACGGGTGGGTACTGTAGAGTGAATCAACACTCTAGATGGACACCCTAGAMGGAACTTTGAACATCCTAGAATATAGTTTGAATATGAAAATAGATATTTGAAAACTCTAAACGACGATTCGATTAGAAATGTTTCAAACTCCCAGTCGAGAGTTTATAGTTTATGGTTTGGTCTGTGTGGTGAGGGTAGCATATTTATCAGCCAACTTTCTGAAAACTTCATAAAATTGTTTCGAGAACTCAACTAAGCTCAAAAGTATCTGCTTCACGTTGAAGCTAAGTTTTAATAAGCTATTATAAGTTTTAAAAATGGCTAGCGGCTCAAGGAGTTTCTGATGCTCTTAGATTTTTCCCTAAAGAACTGACGGTGTGGTCCACGGCTGCCTAACTACTGCGTGAAAATGTTTTTCTAGTTCCAAAGTTTCAGTAGTTCGATCGAAGGAAAAGCAGACCCCCTCTGCCTTTACACCCGTCTCCCCTCGTGTCACCTTTTATGTTTTTGAGTTGCAACGTTCAAAGTTTGTCTAATTGGGGGACGGCGGGTCGGATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTTTGTCTAATTGGGAGAC</pcr_primer_p1>
		<pcr_primer_p2>ACCATAAACTATAAACTCTCGACTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGGCGGGGGAACGGTGGGACGGATGGAGGAGAGATGGTGTCTAATTGGGGTAAGACGGGGGACGGCGGGATGGGTTTGGAAGATGGTGTGTGAGCAGCACCGGTGGGTACTGTAGGTAGGGAAGAACTAGTCACGAGCAGAGAAAGAAAAAGATTCCCATTTGGATCGATGGAAAGACAGTCCTTCTCTGCTCTTCCACCCGTCTCCTTTCGTGCCACCCAGTATGTTTCTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGAAGGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCAGCACGGGTGGGTACTGTAGAGTGAATCAACACTCTAGATGGACACCCTAGACGGAACTTTGAACATCCTAGAATATAGTTTGAATATGAAAATAGATATTTGAAAACTCTAAACGACGATTCGATTAGAAATGTTTCAAACTCCCAGTCGAGAGTTTATAGTTTATGGT</canonical_amplicon>
		<polymorphic_amplicon>GAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGGCGGGGGAACGGTGGGACGGATGGAGGAGAGATGGTGTCTAATTGGGGTAAGACGGGGGACGGCGGGATGGGTTTGGAAGATGGTGTGTGAGCAGCACCGGTGGGTACTGTAGGTAGGGAAGAACTAGTCACGAGCAGAGAAAGAAAAAGATTCCCATTTGGATCGATGGAAAGACAGTCCTTCTCTGCTCTTCCACCCGTCTCCTTTCGTGCCACCCAGTATGTTTCTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGAAGGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCAGCACGGGTGGGTACTGTAGAGTGAATCAACACTCTAGATGGACACCCTAGAMGGAACTTTGAACATCCTAGAATATAGTTTGAATATGAAAATAGATATTTGAAAACTCTAAACGACGATTCGATTAGAAATGTTTCAAACTCCCAGTCGAGAGTTTATAGTTTATGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20553</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1137371</contig_pos>
        <strand>+</strand>
        <context>GATTCKATTA[A/G]AAATGTTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTGAATATGAAAATAGATATTTGAAAACTCTAAACGACGATTCGATTA</left_flank>
        <right_flank>AAATGTTTCAAACTCCCAGTCGAGAGTTTATAGTTTATGGTTTGGTCTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGGCGGGGGAACGGTGGGACGGATGGAGGAGAGATGGTGTCTAATTGGGGTAAGACGGGGGACGGCGGGATGGGTTTGGAAGATGGTGTGTGAGCAGCACCGGTGGGTACTGTAGGTAGGGAAGAACTAGTCACGAGCAGAGAAAGAAAAAGATTCCCATTTGGATCGATGGAAAGACAGTCCTTCTCTGCTCTTCCACCCGTCTCCTTTCGTGCCACCCAGTATGTTTCTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGAAGGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCAGCACGGGTGGGTACTGTAGAGTGAATCAACACTCTAGATGGACACCCTAGACGGAACTTTGAACATCCTAGAATATAGTTTGAATATGAAAATAGATATTTGAAAACTCTAAACGACGATTCGATTAGAAATGTTTCAAACTCCCAGTCGAGAGTTTATAGTTTATGGTTTGGTCTGTGTGGTGAGGGTAGCATATTTATCAGCCAACTTTCTGAAAACTTCATAAAATTGTTTCGAGAACTCAACTAAGCTCAAAAGTATCTGCTTCACGTTGAAGCTAAGTTTTAATAAGCTATTATAAGTTTTAAAAATGGCTAGCGGCTCAAGGAGTTTCTGATGCTCTTAGATTTTTCCCTAAAGAACTGACGGTGTGGTCCACGGCTGCCTAACTACTGCGTGAAAATGTTTTTCTAGTTCCAAAGTTTCAGTAGTTCGATCGAAGGAAAAGCAGACCCCCTCTGCCTTTACACCCGTCTCCCCTCGTGTCACCTTTTATGTTTTTGAGTTGCAACGTTCAAAGTTTGTCTAATTGGGGGACGGCGGGTCGGATGGAAGAGAGATGGAAGAGAGATGGTGTGTGAGCGGCACGGTGGGATACTGTAGAGTGAATCATCACTCTAGATGGACT</canonical>
            <polymorphic>AATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGGCGGGGGAACGGTGGGACGGATGGAGGAGAGATGGTGTCTAATTGGGGTAAGACGGGGGACGGCGGGATGGGTTTGGAAGATGGTGTGTGAGCAGCACCGGTGGGTACTGTAGGTAGGGAAGAACTAGTCACGAGCAGAGAAAGAAAAAGATTCCCATTTGGATCGATGGAAAGACAGTCCTTCTCTGCTCTTCCACCCGTCTCCTTTCGTGCCACCCAGTATGTTTCTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGAAGGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCAGCACGGGTGGGTACTGTAGAGTGAATCAACACTCTAGATGGACACCCTAGACGGAACTTTGAACATCCTAGAATATAGTTTGAATATGAAAATAGATATTTGAAAACTCTAAACGACGATTCGATTARAAATGTTTCAAACTCCCAGTCGAGAGTTTATAGTTTATGGTTTGGTCTGTGTGGTGAGGGTAGCATATTTATCAGCCAACTTTCTGAAAACTTCATAAAATTGTTTCGAGAACTCAACTAAGCTCAAAAGTATCTGCTTCACGTTGAAGCTAAGTTTTAATAAGCTATTATAAGTTTTAAAAATGGCTAGCGGCTCAAGGAGTTTCTGATGCTCTTAGATTTTTCCCTAAAGAACTGACGGTGTGGTCCACGGCTGCCTAACTACTGCGTGAAAATGTTTTTCTAGTTCCAAAGTTTCAGTAGTTCGATCGAAGGAAAAGCAGACCCCCTCTGCCTTTACACCCGTCTCCCCTCGTGTCACCTTTTATGTTTTTGAGTTGCAACGTTCAAAGTTTGTCTAATTGGGGGACGGCGGGTCGGATGGAAGAGAGATGGAAGAGAGATGGTGTGTGAGCGGCACGGTGGGATACTGTAGAGTGAATCATCACTCTAGATGGACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGGGTACTGTAGAGTGAATCAA</pcr_primer_p1>
		<pcr_primer_p2>TAGTTGAGTTCTCGAAACAATTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTGGGTACTGTAGAGTGAATCAACACTCTAGATGGACACCCTAGACGGAACTTTGAACATCCTAGAATATAGTTTGAATATGAAAATAGATATTTGAAAACTCTAAACGACGATTCGATTAGAAATGTTTCAAACTCCCAGTCGAGAGTTTATAGTTTATGGTTTGGTCTGTGTGGTGAGGGTAGCATATTTATCAGCCAACTTTCTGAAAACTTCATAAAATTGTTTCGAGAACTCAACTA</canonical_amplicon>
		<polymorphic_amplicon>GTGGGTACTGTAGAGTGAATCAACACTCTAGATGGACACCCTAGACGGAACTTTGAACATCCTAGAATATAGTTTGAATATGAAAATAGATATTTGAAAACTCTAAACGACGATTCGATTARAAATGTTTCAAACTCCCAGTCGAGAGTTTATAGTTTATGGTTTGGTCTGTGTGGTGAGGGTAGCATATTTATCAGCCAACTTTCTGAAAACTTCATAAAATTGTTTCGAGAACTCAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20554</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1137419</contig_pos>
        <strand>+</strand>
        <context>TGGTTTGGTC[C/T]GTGTGGTGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGAAATGTTTCAAACTCCCAGTCGAGAGTTTATAGTTTATGGTTTGGTC</left_flank>
        <right_flank>GTGTGGTGAGGGTAGCATATTTATCAGCCAACTTTCTGAAAACTTCATAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGGGGGAACGGTGGGACGGATGGAGGAGAGATGGTGTCTAATTGGGGTAAGACGGGGGACGGCGGGATGGGTTTGGAAGATGGTGTGTGAGCAGCACCGGTGGGTACTGTAGGTAGGGAAGAACTAGTCACGAGCAGAGAAAGAAAAAGATTCCCATTTGGATCGATGGAAAGACAGTCCTTCTCTGCTCTTCCACCCGTCTCCTTTCGTGCCACCCAGTATGTTTCTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGAAGGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCAGCACGGGTGGGTACTGTAGAGTGAATCAACACTCTAGATGGACACCCTAGACGGAACTTTGAACATCCTAGAATATAGTTTGAATATGAAAATAGATATTTGAAAACTCTAAACGACGATTCGATTAGAAATGTTTCAAACTCCCAGTCGAGAGTTTATAGTTTATGGTTTGGTCTGTGTGGTGAGGGTAGCATATTTATCAGCCAACTTTCTGAAAACTTCATAAAATTGTTTCGAGAACTCAACTAAGCTCAAAAGTATCTGCTTCACGTTGAAGCTAAGTTTTAATAAGCTATTATAAGTTTTAAAAATGGCTAGCGGCTCAAGGAGTTTCTGATGCTCTTAGATTTTTCCCTAAAGAACTGACGGTGTGGTCCACGGCTGCCTAACTACTGCGTGAAAATGTTTTTCTAGTTCCAAAGTTTCAGTAGTTCGATCGAAGGAAAAGCAGACCCCCTCTGCCTTTACACCCGTCTCCCCTCGTGTCACCTTTTATGTTTTTGAGTTGCAACGTTCAAAGTTTGTCTAATTGGGGGACGGCGGGTCGGATGGAAGAGAGATGGAAGAGAGATGGTGTGTGAGCGGCACGGTGGGATACTGTAGAGTGAATCATCACTCTAGATGGACTCCCCAGAATGCACTTTGAACCCCTAGAACATAGTTTGAATTCAAATAA</canonical>
            <polymorphic>GCGGGGGAACGGTGGGACGGATGGAGGAGAGATGGTGTCTAATTGGGGTAAGACGGGGGACGGCGGGATGGGTTTGGAAGATGGTGTGTGAGCAGCACCGGTGGGTACTGTAGGTAGGGAAGAACTAGTCACGAGCAGAGAAAGAAAAAGATTCCCATTTGGATCGATGGAAAGACAGTCCTTCTCTGCTCTTCCACCCGTCTCCTTTCGTGCCACCCAGTATGTTTCTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGAAGGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCAGCACGGGTGGGTACTGTAGAGTGAATCAACACTCTAGATGGACACCCTAGACGGAACTTTGAACATCCTAGAATATAGTTTGAATATGAAAATAGATATTTGAAAACTCTAAACGACGATTCGATTAGAAATGTTTCAAACTCCCAGTCGAGAGTTTATAGTTTATGGTTTGGTCYGTGTGGTGAGGGTAGCATATTTATCAGCCAACTTTCTGAAAACTTCATAAAATTGTTTCGAGAACTCAACTAAGCTCAAAAGTATCTGCTTCACGTTGAAGCTAAGTTTTAATAAGCTATTATAAGTTTTAAAAATGGCTAGCGGCTCAAGGAGTTTCTGATGCTCTTAGATTTTTCCCTAAAGAACTGACGGTGTGGTCCACGGCTGCCTAACTACTGCGTGAAAATGTTTTTCTAGTTCCAAAGTTTCAGTAGTTCGATCGAAGGAAAAGCAGACCCCCTCTGCCTTTACACCCGTCTCCCCTCGTGTCACCTTTTATGTTTTTGAGTTGCAACGTTCAAAGTTTGTCTAATTGGGGGACGGCGGGTCGGATGGAAGAGAGATGGAAGAGAGATGGTGTGTGAGCGGCACGGTGGGATACTGTAGAGTGAATCATCACTCTAGATGGACTCCCCAGAATGCACTTTGAACCCCTAGAACATAGTTTGAATTCAAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGGTACTGTAGAGTGAATCAA</pcr_primer_p1>
		<pcr_primer_p2>TAGTTGAGTTCTCGAAACAATTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTGGGTACTGTAGAGTGAATCAACACTCTAGATGGACACCCTAGACGGAACTTTGAACATCCTAGAATATAGTTTGAATATGAAAATAGATATTTGAAAACTCTAAACGACGATTCGATTAGAAATGTTTCAAACTCCCAGTCGAGAGTTTATAGTTTATGGTTTGGTCTGTGTGGTGAGGGTAGCATATTTATCAGCCAACTTTCTGAAAACTTCATAAAATTGTTTCGAGAACTCAACTA</canonical_amplicon>
		<polymorphic_amplicon>GTGGGTACTGTAGAGTGAATCAACACTCTAGATGGACACCCTAGACGGAACTTTGAACATCCTAGAATATAGTTTGAATATGAAAATAGATATTTGAAAACTCTAAACGACGATTCGATTAGAAATGTTTCAAACTCCCAGTCGAGAGTTTATAGTTTATGGTTTGGTCYGTGTGGTGAGGGTAGCATATTTATCAGCCAACTTTCTGAAAACTTCATAAAATTGTTTCGAGAACTCAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20555</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1138605</contig_pos>
        <strand>+</strand>
        <context>AAATGAACTT[C/T]TTTGAGAAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGTTAACTGCTCATTTTGGAAGTTTCTGGGTTTTTGTAAATGAACTT</left_flank>
        <right_flank>TTTGAGAAGTAAGTTATATTACATGTGAGCAAGAATGGATTTTCAACACC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAGCAGAAATAAGTGGGATTCCCATTTCGTTCGATGGAAAAACAGTCCTTCTCTGCTCTCGCACCCGTCTCCCCTTGTGCCACCCAGTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGACTGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCGACACGGGTGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAAAATAGTTTGAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGAGAAGACATCGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTTGGACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTCATTTTGGAAGTTTCTGGGTTTTTGTAAATGAACTTTTTTGAGAAGTAAGTTATATTACATGTGAGCAAGAATGGATTTTCAACACCGTAGCTTAATTATGAAGGAACTTCTAATCCAAACAAGATGTGTAATAAATTCCACGACTCACTCCTAGTAAAAATTCCCAGTTTTTGCACCCTTTCAATTCCAAATGTCATCTCATTTCTTGTATTACCAATTCTTACTGTAATGGTGGGAATCATTCCCAATTTAAAAAGCAGTAGCCCTGGTGAACGTGTCAACATACCTTTAAGGTTTATGTGTTCGTCTGTCTGTTTTGGACTTTTTTTGAGTACCTATGTCAGATGGGTGTCGGATGGCGGTGCGTAAGAAAACTGTCGGAAACAGGGTTGCTCTTTCTTTTGTTAAAGACATTCTGGGATGAGTATGATTTGACGACCTAGCGGCTCGATAAGCTTTTGGGTGGCTCCAAAAGAACGGACGGTATAGTCCACGTCAACCTAGTGGAGGTCCCGGCCGCGGTCATGCGCGGCTTC</canonical>
            <polymorphic>AAGAGCAGAAATAAGTGGGATTCCCATTTCGTTCGATGGAAAAACAGTCCTTCTCTGCTCTCGCACCCGTCTCCCCTTGTGCCACCCAGTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGACTGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCGACACGGGTGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAAAATAGTTTGAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGAGAAGACATCGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTTGGACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTCATTTTGGAAGTTTCTGGGTTTTTGTAAATGAACTTYTTTGAGAAGTAAGTTATATTACATGTGAGCAAGAATGGATTTTCAACACCGTAGCTTAATTATGAAGGAACTTCTAATCCAAACAAGATGTGTAATAAATTCCACGACTCACTCCTAGTAAAAATTCCCAGTTTTTGCACCCTTTCAATTCCAAATGTCATCTCATTTCTTGTATTACCAATTCTTACTGTAATGGTGGGAATCATTCCCAATTTAAAAAGCAGTAGCCCTGGTGAACGTGTCAACATACCTTTAAGGTTTATGTGTTCGTCTGTCTGTTTTGGACTTTTTTTGAGTACCTATGTCAGATGGGTGTCGGATGGCGGTGCGTAAGAAAACTGTCGGAAACAGGGTTGCTCTTTCTTTTGTTAAAGACATTCTGGGATGAGTATGATTTGACGACCTAGCGGCTCGATAAGCTTTTGGGTGGCTCCAAAAGAACGGACGGTATAGTCCACGTCAACCTAGTGGAGGTCCCGGCCGCGGTCATGCGCGGCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAGAGGTTATTGATTTGGTC</pcr_primer_p1>
		<pcr_primer_p2>GTCGTGGAATTTATTACACATCT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTCATTTTGGAAGTTTCTGGGTTTTTGTAAATGAACTTTTTTGAGAAGTAAGTTATATTACATGTGAGCAAGAATGGATTTTCAACACCGTAGCTTAATTATGAAGGAACTTCTAATCCAAACAAGATGTGTAATAAATTCCACGAC</canonical_amplicon>
		<polymorphic_amplicon>GACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTCATTTTGGAAGTTTCTGGGTTTTTGTAAATGAACTTYTTTGAGAAGTAAGTTATATTACATGTGAGCAAGAATGGATTTTCAACACCGTAGCTTAATTATGAAGGAACTTCTAATCCAAACAAGATGTGTAATAAATTCCACGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20556</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1138558</contig_pos>
        <strand>+</strand>
        <context>GSACACGTTT[C/T]GTTAACTGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTT</left_flank>
        <right_flank>GTTAACTGCTCATTTTGGAAGTTTCTGGGTTTTTGTAAATGAACTTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATTTGGCTTGGGCCCCCTTTTTTGAGGGGAGAGTAAAATTTGTAAAGAGCAGAAATAAGTGGGATTCCCATTTCGTTCGATGGAAAAACAGTCCTTCTCTGCTCTCGCACCCGTCTCCCCTTGTGCCACCCAGTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGACTGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCGACACGGGTGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAAAATAGTTTGAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGAGAAGACATCGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTTGGACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTCATTTTGGAAGTTTCTGGGTTTTTGTAAATGAACTTTTTTGAGAAGTAAGTTATATTACATGTGAGCAAGAATGGATTTTCAACACCGTAGCTTAATTATGAAGGAACTTCTAATCCAAACAAGATGTGTAATAAATTCCACGACTCACTCCTAGTAAAAATTCCCAGTTTTTGCACCCTTTCAATTCCAAATGTCATCTCATTTCTTGTATTACCAATTCTTACTGTAATGGTGGGAATCATTCCCAATTTAAAAAGCAGTAGCCCTGGTGAACGTGTCAACATACCTTTAAGGTTTATGTGTTCGTCTGTCTGTTTTGGACTTTTTTTGAGTACCTATGTCAGATGGGTGTCGGATGGCGGTGCGTAAGAAAACTGTCGGAAACAGGGTTGCTCTTTCTTTTGTTAAAGACATTCTGGGATGAGTATGATTTGACGACCTAGCGGCTCGATAAGCTTTTGGGTGGCTCCAAAAGAACGGACGGTATAG</canonical>
            <polymorphic>CAAATTTGGCTTGGGCCCCCTTTTTTGAGGGGAGAGTAAAATTTGTAAAGAGCAGAAATAAGTGGGATTCCCATTTCGTTCGATGGAAAAACAGTCCTTCTCTGCTCTCGCACCCGTCTCCCCTTGTGCCACCCAGTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGACTGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCGACACGGGTGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAAAATAGTTTGAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGAGAAGACATCGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTTGGACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTYGTTAACTGCTCATTTTGGAAGTTTCTGGGTTTTTGTAAATGAACTTTTTTGAGAAGTAAGTTATATTACATGTGAGCAAGAATGGATTTTCAACACCGTAGCTTAATTATGAAGGAACTTCTAATCCAAACAAGATGTGTAATAAATTCCACGACTCACTCCTAGTAAAAATTCCCAGTTTTTGCACCCTTTCAATTCCAAATGTCATCTCATTTCTTGTATTACCAATTCTTACTGTAATGGTGGGAATCATTCCCAATTTAAAAAGCAGTAGCCCTGGTGAACGTGTCAACATACCTTTAAGGTTTATGTGTTCGTCTGTCTGTTTTGGACTTTTTTTGAGTACCTATGTCAGATGGGTGTCGGATGGCGGTGCGTAAGAAAACTGTCGGAAACAGGGTTGCTCTTTCTTTTGTTAAAGACATTCTGGGATGAGTATGATTTGACGACCTAGCGGCTCGATAAGCTTTTGGGTGGCTCCAAAAGAACGGACGGTATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAGAGGTTATTGATTTGGTC</pcr_primer_p1>
		<pcr_primer_p2>GTCGTGGAATTTATTACACATCT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTCATTTTGGAAGTTTCTGGGTTTTTGTAAATGAACTTTTTTGAGAAGTAAGTTATATTACATGTGAGCAAGAATGGATTTTCAACACCGTAGCTTAATTATGAAGGAACTTCTAATCCAAACAAGATGTGTAATAAATTCCACGAC</canonical_amplicon>
		<polymorphic_amplicon>GACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTYGTTAACTGCTCATTTTGGAAGTTTCTGGGTTTTTGTAAATGAACTTTTTTGAGAAGTAAGTTATATTACATGTGAGCAAGAATGGATTTTCAACACCGTAGCTTAATTATGAAGGAACTTCTAATCCAAACAAGATGTGTAATAAATTCCACGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20558</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1138519</contig_pos>
        <strand>+</strand>
        <context>ACTGAAAAAT[A/G]AGGGAACTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGGACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAAT</left_flank>
        <right_flank>AGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCCCTTTTTGTCTTGCCTCCCTTTTTTCTCATGCCCCTCAAATTTGGCTTGGGCCCCCTTTTTTGAGGGGAGAGTAAAATTTGTAAAGAGCAGAAATAAGTGGGATTCCCATTTCGTTCGATGGAAAAACAGTCCTTCTCTGCTCTCGCACCCGTCTCCCCTTGTGCCACCCAGTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGACTGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCGACACGGGTGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAAAATAGTTTGAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGAGAAGACATCGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTTGGACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTCATTTTGGAAGTTTCTGGGTTTTTGTAAATGAACTTTTTTGAGAAGTAAGTTATATTACATGTGAGCAAGAATGGATTTTCAACACCGTAGCTTAATTATGAAGGAACTTCTAATCCAAACAAGATGTGTAATAAATTCCACGACTCACTCCTAGTAAAAATTCCCAGTTTTTGCACCCTTTCAATTCCAAATGTCATCTCATTTCTTGTATTACCAATTCTTACTGTAATGGTGGGAATCATTCCCAATTTAAAAAGCAGTAGCCCTGGTGAACGTGTCAACATACCTTTAAGGTTTATGTGTTCGTCTGTCTGTTTTGGACTTTTTTTGAGTACCTATGTCAGATGGGTGTCGGATGGCGGTGCGTAAGAAAACTGTCGGAAACAGGGTTGCTCTTTCTTTTGTTAAAGACATTCTGGGATGAGTATGATTTGACGACCTAGCGGCTCG</canonical>
            <polymorphic>CCCCCTTTTTGTCTTGCCTCCCTTTTTTCTCATGCCCCTCAAATTTGGCTTGGGCCCCCTTTTTTGAGGGGAGAGTAAAATTTGTAAAGAGCAGAAATAAGTGGGATTCCCATTTCGTTCGATGGAAAAACAGTCCTTCTCTGCTCTCGCACCCGTCTCCCCTTGTGCCACCCAGTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGACTGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCGACACGGGTGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAAAATAGTTTGAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGAGAAGACATCGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTTGGACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATRAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTCATTTTGGAAGTTTCTGGGTTTTTGTAAATGAACTTTTTTGAGAAGTAAGTTATATTACATGTGAGCAAGAATGGATTTTCAACACCGTAGCTTAATTATGAAGGAACTTCTAATCCAAACAAGATGTGTAATAAATTCCACGACTCACTCCTAGTAAAAATTCCCAGTTTTTGCACCCTTTCAATTCCAAATGTCATCTCATTTCTTGTATTACCAATTCTTACTGTAATGGTGGGAATCATTCCCAATTTAAAAAGCAGTAGCCCTGGTGAACGTGTCAACATACCTTTAAGGTTTATGTGTTCGTCTGTCTGTTTTGGACTTTTTTTGAGTACCTATGTCAGATGGGTGTCGGATGGCGGTGCGTAAGAAAACTGTCGGAAACAGGGTTGCTCTTTCTTTTGTTAAAGACATTCTGGGATGAGTATGATTTGACGACCTAGCGGCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGATGGGCACCCTAAAATAG</pcr_primer_p1>
		<pcr_primer_p2>AAACTTCCAAAATGAGCAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGATGGGCACCCTAAAATAGTTTGAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGAGAAGACATCGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTTGGACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTCATTTTGGAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>TAGATGGGCACCCTAAAATAGTTTGAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGAGAAGACATCGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTTGGACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATRAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTCATTTTGGAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20559</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1138471</contig_pos>
        <strand></strand>
        <context>aaaatacATT[T/C]GGACAGAGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GACATCGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATT</left_flank>
        <right_flank>GGACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATCGGCAAATCTTGACTTAGGCATAATTTTTCTAGTCGCCCCCGCCCCCTTTTTGTCTTGCCTCCCTTTTTTCTCATGCCCCTCAAATTTGGCTTGGGCCCCCTTTTTTGAGGGGAGAGTAAAATTTGTAAAGAGCAGAAATAAGTGGGATTCCCATTTCGTTCGATGGAAAAACAGTCCTTCTCTGCTCTCGCACCCGTCTCCCCTTGTGCCACCCAGTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGACTGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCGACACGGGTGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAAAATAGTTTGAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGAGAAGACATCGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTTGGACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTCATTTTGGAAGTTTCTGGGTTTTTGTAAATGAACTTTTTTGAGAAGTAAGTTATATTACATGTGAGCAAGAATGGATTTTCAACACCGTAGCTTAATTATGAAGGAACTTCTAATCCAAACAAGATGTGTAATAAATTCCACGACTCACTCCTAGTAAAAATTCCCAGTTTTTGCACCCTTTCAATTCCAAATGTCATCTCATTTCTTGTATTACCAATTCTTACTGTAATGGTGGGAATCATTCCCAATTTAAAAAGCAGTAGCCCTGGTGAACGTGTCAACATACCTTTAAGGTTTATGTGTTCGTCTGTCTGTTTTGGACTTTTTTTGAGTACCTATGTCAGATGGGTGTCGGATGGCGGTGCGTAAGAAAACTGTCGGAAACAGGGTTGCTCTTTCTTT</canonical>
            <polymorphic>AAAAATCGGCAAATCTTGACTTAGGCATAATTTTTCTAGTCGCCCCCGCCCCCTTTTTGTCTTGCCTCCCTTTTTTCTCATGCCCCTCAAATTTGGCTTGGGCCCCCTTTTTTGAGGGGAGAGTAAAATTTGTAAAGAGCAGAAATAAGTGGGATTCCCATTTCGTTCGATGGAAAAACAGTCCTTCTCTGCTCTCGCACCCGTCTCCCCTTGTGCCACCCAGTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGACTGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCGACACGGGTGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAAAATAGTTTGAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGAGAAGACATCGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTYGGACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTCATTTTGGAAGTTTCTGGGTTTTTGTAAATGAACTTTTTTGAGAAGTAAGTTATATTACATGTGAGCAAGAATGGATTTTCAACACCGTAGCTTAATTATGAAGGAACTTCTAATCCAAACAAGATGTGTAATAAATTCCACGACTCACTCCTAGTAAAAATTCCCAGTTTTTGCACCCTTTCAATTCCAAATGTCATCTCATTTCTTGTATTACCAATTCTTACTGTAATGGTGGGAATCATTCCCAATTTAAAAAGCAGTAGCCCTGGTGAACGTGTCAACATACCTTTAAGGTTTATGTGTTCGTCTGTCTGTTTTGGACTTTTTTTGAGTACCTATGTCAGATGGGTGTCGGATGGCGGTGCGTAAGAAAACTGTCGGAAACAGGGTTGCTCTTTCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGATGGGCACCCTAAAATAG</pcr_primer_p1>
		<pcr_primer_p2>AAACTTCCAAAATGAGCAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGATGGGCACCCTAAAATAGTTTGAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGAGAAGACATCGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTTGGACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTCATTTTGGAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>TAGATGGGCACCCTAAAATAGTTTGAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGAGAAGACATCGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTYGGACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTCATTTTGGAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20560</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1138417</contig_pos>
        <strand></strand>
        <context>taagaatgag[A/G]gaagacatyg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAG</left_flank>
        <right_flank>GAAGACATCGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATAC</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGATAGGACTTCCTCCGTTTTTGAGTATAGTTCTAGAAACCGTAAACCTTGAAAAAATCGGCAAATCTTGACTTAGGCATAATTTTTCTAGTCGCCCCCGCCCCCTTTTTGTCTTGCCTCCCTTTTTTCTCATGCCCCTCAAATTTGGCTTGGGCCCCCTTTTTTGAGGGGAGAGTAAAATTTGTAAAGAGCAGAAATAAGTGGGATTCCCATTTCGTTCGATGGAAAAACAGTCCTTCTCTGCTCTCGCACCCGTCTCCCCTTGTGCCACCCAGTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGACTGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCGACACGGGTGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAAAATAGTTTGAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGAGAAGACATCGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTTGGACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTCATTTTGGAAGTTTCTGGGTTTTTGTAAATGAACTTTTTTGAGAAGTAAGTTATATTACATGTGAGCAAGAATGGATTTTCAACACCGTAGCTTAATTATGAAGGAACTTCTAATCCAAACAAGATGTGTAATAAATTCCACGACTCACTCCTAGTAAAAATTCCCAGTTTTTGCACCCTTTCAATTCCAAATGTCATCTCATTTCTTGTATTACCAATTCTTACTGTAATGGTGGGAATCATTCCCAATTTAAAAAGCAGTAGCCCTGGTGAACGTGTCAACATACCTTTAAGGTTTATGTGTTCGTCTGTCTGTTTTGGACTTTTTTTGAGTACCTATGTCAGATGG</canonical>
            <polymorphic>AATGATAGGACTTCCTCCGTTTTTGAGTATAGTTCTAGAAACCGTAAACCTTGAAAAAATCGGCAAATCTTGACTTAGGCATAATTTTTCTAGTCGCCCCCGCCCCCTTTTTGTCTTGCCTCCCTTTTTTCTCATGCCCCTCAAATTTGGCTTGGGCCCCCTTTTTTGAGGGGAGAGTAAAATTTGTAAAGAGCAGAAATAAGTGGGATTCCCATTTCGTTCGATGGAAAAACAGTCCTTCTCTGCTCTCGCACCCGTCTCCCCTTGTGCCACCCAGTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGACTGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCGACACGGGTGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAAAATAGTTTGAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGRGAAGACATCGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTTGGACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTCATTTTGGAAGTTTCTGGGTTTTTGTAAATGAACTTTTTTGAGAAGTAAGTTATATTACATGTGAGCAAGAATGGATTTTCAACACCGTAGCTTAATTATGAAGGAACTTCTAATCCAAACAAGATGTGTAATAAATTCCACGACTCACTCCTAGTAAAAATTCCCAGTTTTTGCACCCTTTCAATTCCAAATGTCATCTCATTTCTTGTATTACCAATTCTTACTGTAATGGTGGGAATCATTCCCAATTTAAAAAGCAGTAGCCCTGGTGAACGTGTCAACATACCTTTAAGGTTTATGTGTTCGTCTGTCTGTTTTGGACTTTTTTTGAGTACCTATGTCAGATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGATGGGCACCCTAAAATAG</pcr_primer_p1>
		<pcr_primer_p2>AAACTTCCAAAATGAGCAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGATGGGCACCCTAAAATAGTTTGAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGAGAAGACATCGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTTGGACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTCATTTTGGAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>TAGATGGGCACCCTAAAATAGTTTGAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGRGAAGACATCGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTTGGACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTCATTTTGGAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20561</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1138299</contig_pos>
        <strand>+</strand>
        <context>GGTGTGAGCR[A/G]CACGGGTGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAACGACGGGGGGACTGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCG</left_flank>
        <right_flank>CACGGGTGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGATGGAAGAGAGATGGTGTGTGAGCGGCACGGTGGGATACTGTAGAGTGAATCATCACTCTAGATGGACTCCCCAGAATGCACTTTGAACCCCTAGAACATAGTTTGAATTCAAATAATGATAGGACTTCCTCCGTTTTTGAGTATAGTTCTAGAAACCGTAAACCTTGAAAAAATCGGCAAATCTTGACTTAGGCATAATTTTTCTAGTCGCCCCCGCCCCCTTTTTGTCTTGCCTCCCTTTTTTCTCATGCCCCTCAAATTTGGCTTGGGCCCCCTTTTTTGAGGGGAGAGTAAAATTTGTAAAGAGCAGAAATAAGTGGGATTCCCATTTCGTTCGATGGAAAAACAGTCCTTCTCTGCTCTCGCACCCGTCTCCCCTTGTGCCACCCAGTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGACTGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCGACACGGGTGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAAAATAGTTTGAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGAGAAGACATCGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTTGGACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTCATTTTGGAAGTTTCTGGGTTTTTGTAAATGAACTTTTTTGAGAAGTAAGTTATATTACATGTGAGCAAGAATGGATTTTCAACACCGTAGCTTAATTATGAAGGAACTTCTAATCCAAACAAGATGTGTAATAAATTCCACGACTCACTCCTAGTAAAAATTCCCAGTTTTTGCACCCTTTCAATTCCAAATGTCATCTCATTTCTTGTATTACCAATTCTTACTGTAAT</canonical>
            <polymorphic>GAGATGGAAGAGAGATGGTGTGTGAGCGGCACGGTGGGATACTGTAGAGTGAATCATCACTCTAGATGGACTCCCCAGAATGCACTTTGAACCCCTAGAACATAGTTTGAATTCAAATAATGATAGGACTTCCTCCGTTTTTGAGTATAGTTCTAGAAACCGTAAACCTTGAAAAAATCGGCAAATCTTGACTTAGGCATAATTTTTCTAGTCGCCCCCGCCCCCTTTTTGTCTTGCCTCCCTTTTTTCTCATGCCCCTCAAATTTGGCTTGGGCCCCCTTTTTTGAGGGGAGAGTAAAATTTGTAAAGAGCAGAAATAAGTGGGATTCCCATTTCGTTCGATGGAAAAACAGTCCTTCTCTGCTCTCGCACCCGTCTCCCCTTGTGCCACCCAGTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGACTGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCGRCACGGGTGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAAAATAGTTTGAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGAGAAGACATCGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTTGGACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTCATTTTGGAAGTTTCTGGGTTTTTGTAAATGAACTTTTTTGAGAAGTAAGTTATATTACATGTGAGCAAGAATGGATTTTCAACACCGTAGCTTAATTATGAAGGAACTTCTAATCCAAACAAGATGTGTAATAAATTCCACGACTCACTCCTAGTAAAAATTCCCAGTTTTTGCACCCTTTCAATTCCAAATGTCATCTCATTTCTTGTATTACCAATTCTTACTGTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTAAAGAGCAGAAATAAGTGG</pcr_primer_p1>
		<pcr_primer_p2>CTATTTTAGGGTGCCCATCTA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTGTAAAGAGCAGAAATAAGTGGGATTCCCATTTCGTTCGATGGAAAAACAGTCCTTCTCTGCTCTCGCACCCGTCTCCCCTTGTGCCACCCAGTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGACTGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCGACACGGGTGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAAAATAG</canonical_amplicon>
		<polymorphic_amplicon>TTGTAAAGAGCAGAAATAAGTGGGATTCCCATTTCGTTCGATGGAAAAACAGTCCTTCTCTGCTCTCGCACCCGTCTCCCCTTGTGCCACCCAGTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGACTGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCGRCACGGGTGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAAAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20562</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1138298</contig_pos>
        <strand>+</strand>
        <context>GGGTGTGAGC[A/G]RCACGGGTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAACGACGGGGGGACTGTGGGACGGATGGAGGAGAGATGGGGTGTGAGC</left_flank>
        <right_flank>ACACGGGTGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGATGGAAGAGAGATGGTGTGTGAGCGGCACGGTGGGATACTGTAGAGTGAATCATCACTCTAGATGGACTCCCCAGAATGCACTTTGAACCCCTAGAACATAGTTTGAATTCAAATAATGATAGGACTTCCTCCGTTTTTGAGTATAGTTCTAGAAACCGTAAACCTTGAAAAAATCGGCAAATCTTGACTTAGGCATAATTTTTCTAGTCGCCCCCGCCCCCTTTTTGTCTTGCCTCCCTTTTTTCTCATGCCCCTCAAATTTGGCTTGGGCCCCCTTTTTTGAGGGGAGAGTAAAATTTGTAAAGAGCAGAAATAAGTGGGATTCCCATTTCGTTCGATGGAAAAACAGTCCTTCTCTGCTCTCGCACCCGTCTCCCCTTGTGCCACCCAGTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGACTGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCGACACGGGTGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAAAATAGTTTGAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGAGAAGACATCGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTTGGACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTCATTTTGGAAGTTTCTGGGTTTTTGTAAATGAACTTTTTTGAGAAGTAAGTTATATTACATGTGAGCAAGAATGGATTTTCAACACCGTAGCTTAATTATGAAGGAACTTCTAATCCAAACAAGATGTGTAATAAATTCCACGACTCACTCCTAGTAAAAATTCCCAGTTTTTGCACCCTTTCAATTCCAAATGTCATCTCATTTCTTGTATTACCAATTCTTACTGTAA</canonical>
            <polymorphic>AGAGATGGAAGAGAGATGGTGTGTGAGCGGCACGGTGGGATACTGTAGAGTGAATCATCACTCTAGATGGACTCCCCAGAATGCACTTTGAACCCCTAGAACATAGTTTGAATTCAAATAATGATAGGACTTCCTCCGTTTTTGAGTATAGTTCTAGAAACCGTAAACCTTGAAAAAATCGGCAAATCTTGACTTAGGCATAATTTTTCTAGTCGCCCCCGCCCCCTTTTTGTCTTGCCTCCCTTTTTTCTCATGCCCCTCAAATTTGGCTTGGGCCCCCTTTTTTGAGGGGAGAGTAAAATTTGTAAAGAGCAGAAATAAGTGGGATTCCCATTTCGTTCGATGGAAAAACAGTCCTTCTCTGCTCTCGCACCCGTCTCCCCTTGTGCCACCCAGTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGACTGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCRACACGGGTGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAAAATAGTTTGAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGAGAAGACATCGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTTGGACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTCATTTTGGAAGTTTCTGGGTTTTTGTAAATGAACTTTTTTGAGAAGTAAGTTATATTACATGTGAGCAAGAATGGATTTTCAACACCGTAGCTTAATTATGAAGGAACTTCTAATCCAAACAAGATGTGTAATAAATTCCACGACTCACTCCTAGTAAAAATTCCCAGTTTTTGCACCCTTTCAATTCCAAATGTCATCTCATTTCTTGTATTACCAATTCTTACTGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTAAAGAGCAGAAATAAGTGG</pcr_primer_p1>
		<pcr_primer_p2>CTATTTTAGGGTGCCCATCTA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTGTAAAGAGCAGAAATAAGTGGGATTCCCATTTCGTTCGATGGAAAAACAGTCCTTCTCTGCTCTCGCACCCGTCTCCCCTTGTGCCACCCAGTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGACTGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCGACACGGGTGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAAAATAG</canonical_amplicon>
		<polymorphic_amplicon>TTGTAAAGAGCAGAAATAAGTGGGATTCCCATTTCGTTCGATGGAAAAACAGTCCTTCTCTGCTCTCGCACCCGTCTCCCCTTGTGCCACCCAGTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGACTGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCRACACGGGTGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAAAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20563</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1138264</contig_pos>
        <strand>+</strand>
        <context>ACGGGGGGAC[G/T]GTGGGACGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGAC</left_flank>
        <right_flank>GTGGGACGGATGGAGGAGAGATGGGGTGTGAGCGACACGGGTGGGTACTG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTCTAATTGGGGGACGGCGGGTCGGATGGAAGAGAGATGGAAGAGAGATGGTGTGTGAGCGGCACGGTGGGATACTGTAGAGTGAATCATCACTCTAGATGGACTCCCCAGAATGCACTTTGAACCCCTAGAACATAGTTTGAATTCAAATAATGATAGGACTTCCTCCGTTTTTGAGTATAGTTCTAGAAACCGTAAACCTTGAAAAAATCGGCAAATCTTGACTTAGGCATAATTTTTCTAGTCGCCCCCGCCCCCTTTTTGTCTTGCCTCCCTTTTTTCTCATGCCCCTCAAATTTGGCTTGGGCCCCCTTTTTTGAGGGGAGAGTAAAATTTGTAAAGAGCAGAAATAAGTGGGATTCCCATTTCGTTCGATGGAAAAACAGTCCTTCTCTGCTCTCGCACCCGTCTCCCCTTGTGCCACCCAGTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGACTGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCGACACGGGTGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAAAATAGTTTGAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGAGAAGACATCGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTTGGACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTCATTTTGGAAGTTTCTGGGTTTTTGTAAATGAACTTTTTTGAGAAGTAAGTTATATTACATGTGAGCAAGAATGGATTTTCAACACCGTAGCTTAATTATGAAGGAACTTCTAATCCAAACAAGATGTGTAATAAATTCCACGACTCACTCCTAGTAAAAATTCCCAGTTTTTGCACCCTTTCAATTCCAAATGTC</canonical>
            <polymorphic>TTGTCTAATTGGGGGACGGCGGGTCGGATGGAAGAGAGATGGAAGAGAGATGGTGTGTGAGCGGCACGGTGGGATACTGTAGAGTGAATCATCACTCTAGATGGACTCCCCAGAATGCACTTTGAACCCCTAGAACATAGTTTGAATTCAAATAATGATAGGACTTCCTCCGTTTTTGAGTATAGTTCTAGAAACCGTAAACCTTGAAAAAATCGGCAAATCTTGACTTAGGCATAATTTTTCTAGTCGCCCCCGCCCCCTTTTTGTCTTGCCTCCCTTTTTTCTCATGCCCCTCAAATTTGGCTTGGGCCCCCTTTTTTGAGGGGAGAGTAAAATTTGTAAAGAGCAGAAATAAGTGGGATTCCCATTTCGTTCGATGGAAAAACAGTCCTTCTCTGCTCTCGCACCCGTCTCCCCTTGTGCCACCCAGTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGACKGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCGACACGGGTGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAAAATAGTTTGAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGAGAAGACATCGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTTGGACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTCATTTTGGAAGTTTCTGGGTTTTTGTAAATGAACTTTTTTGAGAAGTAAGTTATATTACATGTGAGCAAGAATGGATTTTCAACACCGTAGCTTAATTATGAAGGAACTTCTAATCCAAACAAGATGTGTAATAAATTCCACGACTCACTCCTAGTAAAAATTCCCAGTTTTTGCACCCTTTCAATTCCAAATGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTAAAGAGCAGAAATAAGTGG</pcr_primer_p1>
		<pcr_primer_p2>CTATTTTAGGGTGCCCATCTA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTGTAAAGAGCAGAAATAAGTGGGATTCCCATTTCGTTCGATGGAAAAACAGTCCTTCTCTGCTCTCGCACCCGTCTCCCCTTGTGCCACCCAGTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGACTGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCGACACGGGTGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAAAATAG</canonical_amplicon>
		<polymorphic_amplicon>TTGTAAAGAGCAGAAATAAGTGGGATTCCCATTTCGTTCGATGGAAAAACAGTCCTTCTCTGCTCTCGCACCCGTCTCCCCTTGTGCCACCCAGTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGACKGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCGACACGGGTGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAAAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20564</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1179399</contig_pos>
        <strand>+</strand>
        <context>AAACAAAATT[A/C]CAGAGAAGAC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTGTCAGGTGACCAGGTTCTAATTTTTACGTTTTACCAAAACAAAATT</left_flank>
        <right_flank>CAGAGAAGACCTCACCACAGCGGTGCGTGATTCAACAACGGTCGATGGTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAACCTGACATTGAAAATACTCAACATTAAGTGAGTGATGTGCGTTTTTCGATCTCATCTTGCAACAAAAATTTCTCAGACAAACGACTGAAGACAAGGATGCGACTGCGGCAAAAAGTCGCCTGAGATTGAATACAATTGTTGATAAGGTGGTTTGATATAGATCAATTTTGTTATGAAATCTTAATTTTTGTAGTCCGACGGAAACAGCACAAGGAATATGTGTCGCATGTGGTTTTCGAGCGGCATATGAGTCTCTCGATTGGCATACACGAGAATCAAAGCGCAGGCAACGCTACATCGGTATCAATACTAGAAAATCGAAAGAAAAAACAAAAATAGAACATTTTCAGATCGCTGGCGTCCACCTCTCCAACTCCTTGTACCCAATTTTTGTGAACAAAGATGTTATTGATGGAATGCTGCCCGTTGCCCGATTCTCTGATGTTTTTGTCAGGTGACCAGGTTCTAATTTTTACGTTTTACCAAAACAAAATTCCAGAGAAGACCTCACCACAGCGGTGCGTGATTCAACAACGGTCGATGGTTTTGTAACCAACGCACTGGAGGAACGAATAACAACCATCAAGTCAATCCTATCTCTTGGCGGATCAAACGCCGTCGTGGCAAATATGAAAATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAATTTCAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTTGATTGAATTCATGATTCATTTGTTCTGTTTGGTTATACCATTTACCTATCAATCTTGAGTATCTAACTCTGTGCTAACCGAAACGTGTTCCAACATCATTTATTGTTTTAACATAGTCTCAAGGAGCGTTTTCTCCAGTTGATTTTCTGCCATATTGACCATTTTCAAGTTTCCGATCATTTTGAAAGTTTTGGATAT</canonical>
            <polymorphic>CAAACCTGACATTGAAAATACTCAACATTAAGTGAGTGATGTGCGTTTTTCGATCTCATCTTGCAACAAAAATTTCTCAGACAAACGACTGAAGACAAGGATGCGACTGCGGCAAAAAGTCGCCTGAGATTGAATACAATTGTTGATAAGGTGGTTTGATATAGATCAATTTTGTTATGAAATCTTAATTTTTGTAGTCCGACGGAAACAGCACAAGGAATATGTGTCGCATGTGGTTTTCGAGCGGCATATGAGTCTCTCGATTGGCATACACGAGAATCAAAGCGCAGGCAACGCTACATCGGTATCAATACTAGAAAATCGAAAGAAAAAACAAAAATAGAACATTTTCAGATCGCTGGCGTCCACCTCTCCAACTCCTTGTACCCAATTTTTGTGAACAAAGATGTTATTGATGGAATGCTGCCCGTTGCCCGATTCTCTGATGTTTTTGTCAGGTGACCAGGTTCTAATTTTTACGTTTTACCAAAACAAAATTMCAGAGAAGACCTCACCACAGCGGTGCGTGATTCAACAACGGTCGATGGTTTTGTAACCAACGCACTGGAGGAACGAATAACAACCATCAAGTCAATCCTATCTCTTGGCGGATCAAACGCCGTCGTGGCAAATATGAAAATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAATTTCAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTTGATTGAATTCATGATTCATTTGTTCTGTTTGGTTATACCATTTACCTATCAATCTTGAGTATCTAACTCTGTGCTAACCGAAACGTGTTCCAACATCATTTATTGTTTTAACATAGTCTCAAGGAGCGTTTTCTCCAGTTGATTTTCTGCCATATTGACCATTTTCAAGTTTCCGATCATTTTGAAAGTTTTGGATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>425 243 193 70 37 32</canonical_bands>
                <polymorphic_bands>668 193 70 37 32</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>312 259 241 144 44</canonical_bands>
                <polymorphic_bands>553 259 144 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAAGATGTTATTGATGGAATG</pcr_primer_p1>
		<pcr_primer_p2>GTGGACACGAGATTTTCATATT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACAAAGATGTTATTGATGGAATGCTGCCCGTTGCCCGATTCTCTGATGTTTTTGTCAGGTGACCAGGTTCTAATTTTTACGTTTTACCAAAACAAAATTCCAGAGAAGACCTCACCACAGCGGTGCGTGATTCAACAACGGTCGATGGTTTTGTAACCAACGCACTGGAGGAACGAATAACAACCATCAAGTCAATCCTATCTCTTGGCGGATCAAACGCCGTCGTGGCAAATATGAAAATCTCGTGTCCAC</canonical_amplicon>
		<polymorphic_amplicon>ACAAAGATGTTATTGATGGAATGCTGCCCGTTGCCCGATTCTCTGATGTTTTTGTCAGGTGACCAGGTTCTAATTTTTACGTTTTACCAAAACAAAATTMCAGAGAAGACCTCACCACAGCGGTGCGTGATTCAACAACGGTCGATGGTTTTGTAACCAACGCACTGGAGGAACGAATAACAACCATCAAGTCAATCCTATCTCTTGGCGGATCAAACGCCGTCGTGGCAAATATGAAAATCTCGTGTCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20565</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1179636</contig_pos>
        <strand>+</strand>
        <context>TTGATTCCAT[A/G]AAAWTTCAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCAT</left_flank>
        <right_flank>AAATTTCAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGAGCGGCATATGAGTCTCTCGATTGGCATACACGAGAATCAAAGCGCAGGCAACGCTACATCGGTATCAATACTAGAAAATCGAAAGAAAAAACAAAAATAGAACATTTTCAGATCGCTGGCGTCCACCTCTCCAACTCCTTGTACCCAATTTTTGTGAACAAAGATGTTATTGATGGAATGCTGCCCGTTGCCCGATTCTCTGATGTTTTTGTCAGGTGACCAGGTTCTAATTTTTACGTTTTACCAAAACAAAATTCCAGAGAAGACCTCACCACAGCGGTGCGTGATTCAACAACGGTCGATGGTTTTGTAACCAACGCACTGGAGGAACGAATAACAACCATCAAGTCAATCCTATCTCTTGGCGGATCAAACGCCGTCGTGGCAAATATGAAAATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAATTTCAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTTGATTGAATTCATGATTCATTTGTTCTGTTTGGTTATACCATTTACCTATCAATCTTGAGTATCTAACTCTGTGCTAACCGAAACGTGTTCCAACATCATTTATTGTTTTAACATAGTCTCAAGGAGCGTTTTCTCCAGTTGATTTTCTGCCATATTGACCATTTTCAAGTTTCCGATCATTTTGAAAGTTTTGGATATGAAAGAGACCTAGATTATTTTGGGAAATCGGTAGTTTTTCAGCTATTTGTCTTTTTTAGCAAGAAACCTGTACAAAAACTGGTCAAAACCTTTGTCTTTCAAAAAAAAAAGCAAACAGCTGAAAACTAGGAATTTTCAAAAAATGTTGTGAATGGAAAGTTTTCATTCGAGGTCTGTTTTACCCCATTTCAAAACTTTCAAAGTGGTAGGAAACTTGACAGTCGAGCTCCAGACTCT</canonical>
            <polymorphic>TTTCGAGCGGCATATGAGTCTCTCGATTGGCATACACGAGAATCAAAGCGCAGGCAACGCTACATCGGTATCAATACTAGAAAATCGAAAGAAAAAACAAAAATAGAACATTTTCAGATCGCTGGCGTCCACCTCTCCAACTCCTTGTACCCAATTTTTGTGAACAAAGATGTTATTGATGGAATGCTGCCCGTTGCCCGATTCTCTGATGTTTTTGTCAGGTGACCAGGTTCTAATTTTTACGTTTTACCAAAACAAAATTCCAGAGAAGACCTCACCACAGCGGTGCGTGATTCAACAACGGTCGATGGTTTTGTAACCAACGCACTGGAGGAACGAATAACAACCATCAAGTCAATCCTATCTCTTGGCGGATCAAACGCCGTCGTGGCAAATATGAAAATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATRAAATTTCAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTTGATTGAATTCATGATTCATTTGTTCTGTTTGGTTATACCATTTACCTATCAATCTTGAGTATCTAACTCTGTGCTAACCGAAACGTGTTCCAACATCATTTATTGTTTTAACATAGTCTCAAGGAGCGTTTTCTCCAGTTGATTTTCTGCCATATTGACCATTTTCAAGTTTCCGATCATTTTGAAAGTTTTGGATATGAAAGAGACCTAGATTATTTTGGGAAATCGGTAGTTTTTCAGCTATTTGTCTTTTTTAGCAAGAAACCTGTACAAAAACTGGTCAAAACCTTTGTCTTTCAAAAAAAAAAGCAAACAGCTGAAAACTAGGAATTTTCAAAAAATGTTGTGAATGGAAAGTTTTCATTCGAGGTCTGTTTTACCCCATTTCAAAACTTTCAAAGTGGTAGGAAACTTGACAGTCGAGCTCCAGACTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>436 425 78 41 15 5</canonical_bands>
                <polymorphic_bands>436 425 93 41 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATCAAGTCAATCCTATCTCTTG</pcr_primer_p1>
		<pcr_primer_p2>TAACCAAACAGAACAAATGAATC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CATCAAGTCAATCCTATCTCTTGGCGGATCAAACGCCGTCGTGGCAAATATGAAAATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAATTTCAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTTGATTGAATTCATGATTCATTTGTTCTGTTTGGTTA</canonical_amplicon>
		<polymorphic_amplicon>CATCAAGTCAATCCTATCTCTTGGCGGATCAAACGCCGTCGTGGCAAATATGAAAATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATRAAATTTCAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTTGATTGAATTCATGATTCATTTGTTCTGTTTGGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20566</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1179640</contig_pos>
        <strand>+</strand>
        <context>TTCCATRAAA[A/T]TTCAAAATGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAA</left_flank>
        <right_flank>TTCAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGCGGCATATGAGTCTCTCGATTGGCATACACGAGAATCAAAGCGCAGGCAACGCTACATCGGTATCAATACTAGAAAATCGAAAGAAAAAACAAAAATAGAACATTTTCAGATCGCTGGCGTCCACCTCTCCAACTCCTTGTACCCAATTTTTGTGAACAAAGATGTTATTGATGGAATGCTGCCCGTTGCCCGATTCTCTGATGTTTTTGTCAGGTGACCAGGTTCTAATTTTTACGTTTTACCAAAACAAAATTCCAGAGAAGACCTCACCACAGCGGTGCGTGATTCAACAACGGTCGATGGTTTTGTAACCAACGCACTGGAGGAACGAATAACAACCATCAAGTCAATCCTATCTCTTGGCGGATCAAACGCCGTCGTGGCAAATATGAAAATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAATTTCAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTTGATTGAATTCATGATTCATTTGTTCTGTTTGGTTATACCATTTACCTATCAATCTTGAGTATCTAACTCTGTGCTAACCGAAACGTGTTCCAACATCATTTATTGTTTTAACATAGTCTCAAGGAGCGTTTTCTCCAGTTGATTTTCTGCCATATTGACCATTTTCAAGTTTCCGATCATTTTGAAAGTTTTGGATATGAAAGAGACCTAGATTATTTTGGGAAATCGGTAGTTTTTCAGCTATTTGTCTTTTTTAGCAAGAAACCTGTACAAAAACTGGTCAAAACCTTTGTCTTTCAAAAAAAAAAGCAAACAGCTGAAAACTAGGAATTTTCAAAAAATGTTGTGAATGGAAAGTTTTCATTCGAGGTCTGTTTTACCCCATTTCAAAACTTTCAAAGTGGTAGGAAACTTGACAGTCGAGCTCCAGACTCTTTTA</canonical>
            <polymorphic>GAGCGGCATATGAGTCTCTCGATTGGCATACACGAGAATCAAAGCGCAGGCAACGCTACATCGGTATCAATACTAGAAAATCGAAAGAAAAAACAAAAATAGAACATTTTCAGATCGCTGGCGTCCACCTCTCCAACTCCTTGTACCCAATTTTTGTGAACAAAGATGTTATTGATGGAATGCTGCCCGTTGCCCGATTCTCTGATGTTTTTGTCAGGTGACCAGGTTCTAATTTTTACGTTTTACCAAAACAAAATTCCAGAGAAGACCTCACCACAGCGGTGCGTGATTCAACAACGGTCGATGGTTTTGTAACCAACGCACTGGAGGAACGAATAACAACCATCAAGTCAATCCTATCTCTTGGCGGATCAAACGCCGTCGTGGCAAATATGAAAATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAAWTTCAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTTGATTGAATTCATGATTCATTTGTTCTGTTTGGTTATACCATTTACCTATCAATCTTGAGTATCTAACTCTGTGCTAACCGAAACGTGTTCCAACATCATTTATTGTTTTAACATAGTCTCAAGGAGCGTTTTCTCCAGTTGATTTTCTGCCATATTGACCATTTTCAAGTTTCCGATCATTTTGAAAGTTTTGGATATGAAAGAGACCTAGATTATTTTGGGAAATCGGTAGTTTTTCAGCTATTTGTCTTTTTTAGCAAGAAACCTGTACAAAAACTGGTCAAAACCTTTGTCTTTCAAAAAAAAAAGCAAACAGCTGAAAACTAGGAATTTTCAAAAAATGTTGTGAATGGAAAGTTTTCATTCGAGGTCTGTTTTACCCCATTTCAAAACTTTCAAAGTGGTAGGAAACTTGACAGTCGAGCTCCAGACTCTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>323 254 243 111 37 32</canonical_bands>
                <polymorphic_bands>323 280 254 111 32</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>323 243 148 111 82 37 32 24</canonical_bands>
                <polymorphic_bands>323 280 148 111 82 32 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATCAAGTCAATCCTATCTCTTG</pcr_primer_p1>
		<pcr_primer_p2>TAACCAAACAGAACAAATGAATC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CATCAAGTCAATCCTATCTCTTGGCGGATCAAACGCCGTCGTGGCAAATATGAAAATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAATTTCAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTTGATTGAATTCATGATTCATTTGTTCTGTTTGGTTA</canonical_amplicon>
		<polymorphic_amplicon>CATCAAGTCAATCCTATCTCTTGGCGGATCAAACGCCGTCGTGGCAAATATGAAAATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAAWTTCAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTTGATTGAATTCATGATTCATTTGTTCTGTTTGGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20567</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1179660</contig_pos>
        <strand>+</strand>
        <context>GATCTCATTT[A/C]TGTTTGATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAACATGCCATGACCTTTGATTCCATGAAATTTCAAAATGGATCTCATTT</left_flank>
        <right_flank>TGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTTGATTGAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTGGCATACACGAGAATCAAAGCGCAGGCAACGCTACATCGGTATCAATACTAGAAAATCGAAAGAAAAAACAAAAATAGAACATTTTCAGATCGCTGGCGTCCACCTCTCCAACTCCTTGTACCCAATTTTTGTGAACAAAGATGTTATTGATGGAATGCTGCCCGTTGCCCGATTCTCTGATGTTTTTGTCAGGTGACCAGGTTCTAATTTTTACGTTTTACCAAAACAAAATTCCAGAGAAGACCTCACCACAGCGGTGCGTGATTCAACAACGGTCGATGGTTTTGTAACCAACGCACTGGAGGAACGAATAACAACCATCAAGTCAATCCTATCTCTTGGCGGATCAAACGCCGTCGTGGCAAATATGAAAATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAATTTCAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTTGATTGAATTCATGATTCATTTGTTCTGTTTGGTTATACCATTTACCTATCAATCTTGAGTATCTAACTCTGTGCTAACCGAAACGTGTTCCAACATCATTTATTGTTTTAACATAGTCTCAAGGAGCGTTTTCTCCAGTTGATTTTCTGCCATATTGACCATTTTCAAGTTTCCGATCATTTTGAAAGTTTTGGATATGAAAGAGACCTAGATTATTTTGGGAAATCGGTAGTTTTTCAGCTATTTGTCTTTTTTAGCAAGAAACCTGTACAAAAACTGGTCAAAACCTTTGTCTTTCAAAAAAAAAAGCAAACAGCTGAAAACTAGGAATTTTCAAAAAATGTTGTGAATGGAAAGTTTTCATTCGAGGTCTGTTTTACCCCATTTCAAAACTTTCAAAGTGGTAGGAAACTTGACAGTCGAGCTCCAGACTCTTTTAAATAGACAGAATGACCAAAC</canonical>
            <polymorphic>GATTGGCATACACGAGAATCAAAGCGCAGGCAACGCTACATCGGTATCAATACTAGAAAATCGAAAGAAAAAACAAAAATAGAACATTTTCAGATCGCTGGCGTCCACCTCTCCAACTCCTTGTACCCAATTTTTGTGAACAAAGATGTTATTGATGGAATGCTGCCCGTTGCCCGATTCTCTGATGTTTTTGTCAGGTGACCAGGTTCTAATTTTTACGTTTTACCAAAACAAAATTCCAGAGAAGACCTCACCACAGCGGTGCGTGATTCAACAACGGTCGATGGTTTTGTAACCAACGCACTGGAGGAACGAATAACAACCATCAAGTCAATCCTATCTCTTGGCGGATCAAACGCCGTCGTGGCAAATATGAAAATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAATTTCAAAATGGATCTCATTTMTGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTTGATTGAATTCATGATTCATTTGTTCTGTTTGGTTATACCATTTACCTATCAATCTTGAGTATCTAACTCTGTGCTAACCGAAACGTGTTCCAACATCATTTATTGTTTTAACATAGTCTCAAGGAGCGTTTTCTCCAGTTGATTTTCTGCCATATTGACCATTTTCAAGTTTCCGATCATTTTGAAAGTTTTGGATATGAAAGAGACCTAGATTATTTTGGGAAATCGGTAGTTTTTCAGCTATTTGTCTTTTTTAGCAAGAAACCTGTACAAAAACTGGTCAAAACCTTTGTCTTTCAAAAAAAAAAGCAAACAGCTGAAAACTAGGAATTTTCAAAAAATGTTGTGAATGGAAAGTTTTCATTCGAGGTCTGTTTTACCCCATTTCAAAACTTTCAAAGTGGTAGGAAACTTGACAGTCGAGCTCCAGACTCTTTTAAATAGACAGAATGACCAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCAAGTCAATCCTATCTCTTG</pcr_primer_p1>
		<pcr_primer_p2>TAACCAAACAGAACAAATGAATC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CATCAAGTCAATCCTATCTCTTGGCGGATCAAACGCCGTCGTGGCAAATATGAAAATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAATTTCAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTTGATTGAATTCATGATTCATTTGTTCTGTTTGGTTA</canonical_amplicon>
		<polymorphic_amplicon>CATCAAGTCAATCCTATCTCTTGGCGGATCAAACGCCGTCGTGGCAAATATGAAAATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAATTTCAAAATGGATCTCATTTMTGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTTGATTGAATTCATGATTCATTTGTTCTGTTTGGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20568</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1179693</contig_pos>
        <strand>+</strand>
        <context>TCAACTTATA[A/T]ATATCTTTRA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTATA</left_flank>
        <right_flank>ATATCTTTGATTGAATTCATGATTCATTTGTTCTGTTTGGTTATACCATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCTACATCGGTATCAATACTAGAAAATCGAAAGAAAAAACAAAAATAGAACATTTTCAGATCGCTGGCGTCCACCTCTCCAACTCCTTGTACCCAATTTTTGTGAACAAAGATGTTATTGATGGAATGCTGCCCGTTGCCCGATTCTCTGATGTTTTTGTCAGGTGACCAGGTTCTAATTTTTACGTTTTACCAAAACAAAATTCCAGAGAAGACCTCACCACAGCGGTGCGTGATTCAACAACGGTCGATGGTTTTGTAACCAACGCACTGGAGGAACGAATAACAACCATCAAGTCAATCCTATCTCTTGGCGGATCAAACGCCGTCGTGGCAAATATGAAAATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAATTTCAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTTGATTGAATTCATGATTCATTTGTTCTGTTTGGTTATACCATTTACCTATCAATCTTGAGTATCTAACTCTGTGCTAACCGAAACGTGTTCCAACATCATTTATTGTTTTAACATAGTCTCAAGGAGCGTTTTCTCCAGTTGATTTTCTGCCATATTGACCATTTTCAAGTTTCCGATCATTTTGAAAGTTTTGGATATGAAAGAGACCTAGATTATTTTGGGAAATCGGTAGTTTTTCAGCTATTTGTCTTTTTTAGCAAGAAACCTGTACAAAAACTGGTCAAAACCTTTGTCTTTCAAAAAAAAAAGCAAACAGCTGAAAACTAGGAATTTTCAAAAAATGTTGTGAATGGAAAGTTTTCATTCGAGGTCTGTTTTACCCCATTTCAAAACTTTCAAAGTGGTAGGAAACTTGACAGTCGAGCTCCAGACTCTTTTAAATAGACAGAATGACCAAACATCATCTGGAAAATACGTGAAAAATACAGTACT</canonical>
            <polymorphic>CGCTACATCGGTATCAATACTAGAAAATCGAAAGAAAAAACAAAAATAGAACATTTTCAGATCGCTGGCGTCCACCTCTCCAACTCCTTGTACCCAATTTTTGTGAACAAAGATGTTATTGATGGAATGCTGCCCGTTGCCCGATTCTCTGATGTTTTTGTCAGGTGACCAGGTTCTAATTTTTACGTTTTACCAAAACAAAATTCCAGAGAAGACCTCACCACAGCGGTGCGTGATTCAACAACGGTCGATGGTTTTGTAACCAACGCACTGGAGGAACGAATAACAACCATCAAGTCAATCCTATCTCTTGGCGGATCAAACGCCGTCGTGGCAAATATGAAAATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAATTTCAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTATAWATATCTTTGATTGAATTCATGATTCATTTGTTCTGTTTGGTTATACCATTTACCTATCAATCTTGAGTATCTAACTCTGTGCTAACCGAAACGTGTTCCAACATCATTTATTGTTTTAACATAGTCTCAAGGAGCGTTTTCTCCAGTTGATTTTCTGCCATATTGACCATTTTCAAGTTTCCGATCATTTTGAAAGTTTTGGATATGAAAGAGACCTAGATTATTTTGGGAAATCGGTAGTTTTTCAGCTATTTGTCTTTTTTAGCAAGAAACCTGTACAAAAACTGGTCAAAACCTTTGTCTTTCAAAAAAAAAAGCAAACAGCTGAAAACTAGGAATTTTCAAAAAATGTTGTGAATGGAAAGTTTTCATTCGAGGTCTGTTTTACCCCATTTCAAAACTTTCAAAGTGGTAGGAAACTTGACAGTCGAGCTCCAGACTCTTTTAAATAGACAGAATGACCAAACATCATCTGGAAAATACGTGAAAAATACAGTACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCTCGTGTCCACAGTTTAAT</pcr_primer_p1>
		<pcr_primer_p2>CGGTTAGCACAGAGTTAGATACT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAATTTCAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTTGATTGAATTCATGATTCATTTGTTCTGTTTGGTTATACCATTTACCTATCAATCTTGAGTATCTAACTCTGTGCTAACCG</canonical_amplicon>
		<polymorphic_amplicon>AATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAATTTCAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTATAWATATCTTTGATTGAATTCATGATTCATTTGTTCTGTTTGGTTATACCATTTACCTATCAATCTTGAGTATCTAACTCTGTGCTAACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20569</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1179702</contig_pos>
        <strand>+</strand>
        <context>AWATATCTTT[A/G]ATTGAMTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTT</left_flank>
        <right_flank>ATTGAATTCATGATTCATTTGTTCTGTTTGGTTATACCATTTACCTATCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTATCAATACTAGAAAATCGAAAGAAAAAACAAAAATAGAACATTTTCAGATCGCTGGCGTCCACCTCTCCAACTCCTTGTACCCAATTTTTGTGAACAAAGATGTTATTGATGGAATGCTGCCCGTTGCCCGATTCTCTGATGTTTTTGTCAGGTGACCAGGTTCTAATTTTTACGTTTTACCAAAACAAAATTCCAGAGAAGACCTCACCACAGCGGTGCGTGATTCAACAACGGTCGATGGTTTTGTAACCAACGCACTGGAGGAACGAATAACAACCATCAAGTCAATCCTATCTCTTGGCGGATCAAACGCCGTCGTGGCAAATATGAAAATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAATTTCAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTTGATTGAATTCATGATTCATTTGTTCTGTTTGGTTATACCATTTACCTATCAATCTTGAGTATCTAACTCTGTGCTAACCGAAACGTGTTCCAACATCATTTATTGTTTTAACATAGTCTCAAGGAGCGTTTTCTCCAGTTGATTTTCTGCCATATTGACCATTTTCAAGTTTCCGATCATTTTGAAAGTTTTGGATATGAAAGAGACCTAGATTATTTTGGGAAATCGGTAGTTTTTCAGCTATTTGTCTTTTTTAGCAAGAAACCTGTACAAAAACTGGTCAAAACCTTTGTCTTTCAAAAAAAAAAGCAAACAGCTGAAAACTAGGAATTTTCAAAAAATGTTGTGAATGGAAAGTTTTCATTCGAGGTCTGTTTTACCCCATTTCAAAACTTTCAAAGTGGTAGGAAACTTGACAGTCGAGCTCCAGACTCTTTTAAATAGACAGAATGACCAAACATCATCTGGAAAATACGTGAAAAATACAGTACTGTATTAGTT</canonical>
            <polymorphic>GGTATCAATACTAGAAAATCGAAAGAAAAAACAAAAATAGAACATTTTCAGATCGCTGGCGTCCACCTCTCCAACTCCTTGTACCCAATTTTTGTGAACAAAGATGTTATTGATGGAATGCTGCCCGTTGCCCGATTCTCTGATGTTTTTGTCAGGTGACCAGGTTCTAATTTTTACGTTTTACCAAAACAAAATTCCAGAGAAGACCTCACCACAGCGGTGCGTGATTCAACAACGGTCGATGGTTTTGTAACCAACGCACTGGAGGAACGAATAACAACCATCAAGTCAATCCTATCTCTTGGCGGATCAAACGCCGTCGTGGCAAATATGAAAATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAATTTCAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTTRATTGAATTCATGATTCATTTGTTCTGTTTGGTTATACCATTTACCTATCAATCTTGAGTATCTAACTCTGTGCTAACCGAAACGTGTTCCAACATCATTTATTGTTTTAACATAGTCTCAAGGAGCGTTTTCTCCAGTTGATTTTCTGCCATATTGACCATTTTCAAGTTTCCGATCATTTTGAAAGTTTTGGATATGAAAGAGACCTAGATTATTTTGGGAAATCGGTAGTTTTTCAGCTATTTGTCTTTTTTAGCAAGAAACCTGTACAAAAACTGGTCAAAACCTTTGTCTTTCAAAAAAAAAAGCAAACAGCTGAAAACTAGGAATTTTCAAAAAATGTTGTGAATGGAAAGTTTTCATTCGAGGTCTGTTTTACCCCATTTCAAAACTTTCAAAGTGGTAGGAAACTTGACAGTCGAGCTCCAGACTCTTTTAAATAGACAGAATGACCAAACATCATCTGGAAAATACGTGAAAAATACAGTACTGTATTAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCTCGTGTCCACAGTTTAAT</pcr_primer_p1>
		<pcr_primer_p2>CGGTTAGCACAGAGTTAGATACT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAATTTCAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTTGATTGAATTCATGATTCATTTGTTCTGTTTGGTTATACCATTTACCTATCAATCTTGAGTATCTAACTCTGTGCTAACCG</canonical_amplicon>
		<polymorphic_amplicon>AATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAATTTCAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTTRATTGAATTCATGATTCATTTGTTCTGTTTGGTTATACCATTTACCTATCAATCTTGAGTATCTAACTCTGTGCTAACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20570</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1179708</contig_pos>
        <strand>+</strand>
        <context>CTTTRATTGA[A/C]TTCATGATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTATGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTTGATTGA</left_flank>
        <right_flank>TTCATGATTCATTTGTTCTGTTTGGTTATACCATTTACCTATCAATCTTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATACTAGAAAATCGAAAGAAAAAACAAAAATAGAACATTTTCAGATCGCTGGCGTCCACCTCTCCAACTCCTTGTACCCAATTTTTGTGAACAAAGATGTTATTGATGGAATGCTGCCCGTTGCCCGATTCTCTGATGTTTTTGTCAGGTGACCAGGTTCTAATTTTTACGTTTTACCAAAACAAAATTCCAGAGAAGACCTCACCACAGCGGTGCGTGATTCAACAACGGTCGATGGTTTTGTAACCAACGCACTGGAGGAACGAATAACAACCATCAAGTCAATCCTATCTCTTGGCGGATCAAACGCCGTCGTGGCAAATATGAAAATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAATTTCAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTTGATTGAATTCATGATTCATTTGTTCTGTTTGGTTATACCATTTACCTATCAATCTTGAGTATCTAACTCTGTGCTAACCGAAACGTGTTCCAACATCATTTATTGTTTTAACATAGTCTCAAGGAGCGTTTTCTCCAGTTGATTTTCTGCCATATTGACCATTTTCAAGTTTCCGATCATTTTGAAAGTTTTGGATATGAAAGAGACCTAGATTATTTTGGGAAATCGGTAGTTTTTCAGCTATTTGTCTTTTTTAGCAAGAAACCTGTACAAAAACTGGTCAAAACCTTTGTCTTTCAAAAAAAAAAGCAAACAGCTGAAAACTAGGAATTTTCAAAAAATGTTGTGAATGGAAAGTTTTCATTCGAGGTCTGTTTTACCCCATTTCAAAACTTTCAAAGTGGTAGGAAACTTGACAGTCGAGCTCCAGACTCTTTTAAATAGACAGAATGACCAAACATCATCTGGAAAATACGTGAAAAATACAGTACTGTATTAGTTATCCTT</canonical>
            <polymorphic>AATACTAGAAAATCGAAAGAAAAAACAAAAATAGAACATTTTCAGATCGCTGGCGTCCACCTCTCCAACTCCTTGTACCCAATTTTTGTGAACAAAGATGTTATTGATGGAATGCTGCCCGTTGCCCGATTCTCTGATGTTTTTGTCAGGTGACCAGGTTCTAATTTTTACGTTTTACCAAAACAAAATTCCAGAGAAGACCTCACCACAGCGGTGCGTGATTCAACAACGGTCGATGGTTTTGTAACCAACGCACTGGAGGAACGAATAACAACCATCAAGTCAATCCTATCTCTTGGCGGATCAAACGCCGTCGTGGCAAATATGAAAATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAATTTCAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTTGATTGAMTTCATGATTCATTTGTTCTGTTTGGTTATACCATTTACCTATCAATCTTGAGTATCTAACTCTGTGCTAACCGAAACGTGTTCCAACATCATTTATTGTTTTAACATAGTCTCAAGGAGCGTTTTCTCCAGTTGATTTTCTGCCATATTGACCATTTTCAAGTTTCCGATCATTTTGAAAGTTTTGGATATGAAAGAGACCTAGATTATTTTGGGAAATCGGTAGTTTTTCAGCTATTTGTCTTTTTTAGCAAGAAACCTGTACAAAAACTGGTCAAAACCTTTGTCTTTCAAAAAAAAAAGCAAACAGCTGAAAACTAGGAATTTTCAAAAAATGTTGTGAATGGAAAGTTTTCATTCGAGGTCTGTTTTACCCCATTTCAAAACTTTCAAAGTGGTAGGAAACTTGACAGTCGAGCTCCAGACTCTTTTAAATAGACAGAATGACCAAACATCATCTGGAAAATACGTGAAAAATACAGTACTGTATTAGTTATCCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>323 243 186 179 37 32</canonical_bands>
                <polymorphic_bands>355 243 186 179 37</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>502 466 32</canonical_bands>
                <polymorphic_bands>534 466</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>323 243 179 82 80 37 32 24</canonical_bands>
                <polymorphic_bands>355 243 179 82 80 37 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCTCGTGTCCACAGTTTAAT</pcr_primer_p1>
		<pcr_primer_p2>CGGTTAGCACAGAGTTAGATACT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAATTTCAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTTGATTGAATTCATGATTCATTTGTTCTGTTTGGTTATACCATTTACCTATCAATCTTGAGTATCTAACTCTGTGCTAACCG</canonical_amplicon>
		<polymorphic_amplicon>AATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAATTTCAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTTGATTGAMTTCATGATTCATTTGTTCTGTTTGGTTATACCATTTACCTATCAATCTTGAGTATCTAACTCTGTGCTAACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20571</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1179782</contig_pos>
        <strand>+</strand>
        <context>GTGCTAACCG[A/G]AACGTGTTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTTATACCATTTACCTATCAATCTTGAGTATCTAACTCTGTGCTAACCG</left_flank>
        <right_flank>AACGTGTTCCAACATCATTTATTGTTTTAACATAGTCTCAAGGAGCGTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACCCAATTTTTGTGAACAAAGATGTTATTGATGGAATGCTGCCCGTTGCCCGATTCTCTGATGTTTTTGTCAGGTGACCAGGTTCTAATTTTTACGTTTTACCAAAACAAAATTCCAGAGAAGACCTCACCACAGCGGTGCGTGATTCAACAACGGTCGATGGTTTTGTAACCAACGCACTGGAGGAACGAATAACAACCATCAAGTCAATCCTATCTCTTGGCGGATCAAACGCCGTCGTGGCAAATATGAAAATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAATTTCAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTTGATTGAATTCATGATTCATTTGTTCTGTTTGGTTATACCATTTACCTATCAATCTTGAGTATCTAACTCTGTGCTAACCGAAACGTGTTCCAACATCATTTATTGTTTTAACATAGTCTCAAGGAGCGTTTTCTCCAGTTGATTTTCTGCCATATTGACCATTTTCAAGTTTCCGATCATTTTGAAAGTTTTGGATATGAAAGAGACCTAGATTATTTTGGGAAATCGGTAGTTTTTCAGCTATTTGTCTTTTTTAGCAAGAAACCTGTACAAAAACTGGTCAAAACCTTTGTCTTTCAAAAAAAAAAGCAAACAGCTGAAAACTAGGAATTTTCAAAAAATGTTGTGAATGGAAAGTTTTCATTCGAGGTCTGTTTTACCCCATTTCAAAACTTTCAAAGTGGTAGGAAACTTGACAGTCGAGCTCCAGACTCTTTTAAATAGACAGAATGACCAAACATCATCTGGAAAATACGTGAAAAATACAGTACTGTATTAGTTATCCTTGGGTTTGACTAGTGCAGTCAGCAAACTGTCGCTGTTCATTCGACTCTCACTATCGCTGAATTTGGCCAGTAGAA</canonical>
            <polymorphic>GTACCCAATTTTTGTGAACAAAGATGTTATTGATGGAATGCTGCCCGTTGCCCGATTCTCTGATGTTTTTGTCAGGTGACCAGGTTCTAATTTTTACGTTTTACCAAAACAAAATTCCAGAGAAGACCTCACCACAGCGGTGCGTGATTCAACAACGGTCGATGGTTTTGTAACCAACGCACTGGAGGAACGAATAACAACCATCAAGTCAATCCTATCTCTTGGCGGATCAAACGCCGTCGTGGCAAATATGAAAATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAATTTCAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTTGATTGAATTCATGATTCATTTGTTCTGTTTGGTTATACCATTTACCTATCAATCTTGAGTATCTAACTCTGTGCTAACCGRAACGTGTTCCAACATCATTTATTGTTTTAACATAGTCTCAAGGAGCGTTTTCTCCAGTTGATTTTCTGCCATATTGACCATTTTCAAGTTTCCGATCATTTTGAAAGTTTTGGATATGAAAGAGACCTAGATTATTTTGGGAAATCGGTAGTTTTTCAGCTATTTGTCTTTTTTAGCAAGAAACCTGTACAAAAACTGGTCAAAACCTTTGTCTTTCAAAAAAAAAAGCAAACAGCTGAAAACTAGGAATTTTCAAAAAATGTTGTGAATGGAAAGTTTTCATTCGAGGTCTGTTTTACCCCATTTCAAAACTTTCAAAGTGGTAGGAAACTTGACAGTCGAGCTCCAGACTCTTTTAAATAGACAGAATGACCAAACATCATCTGGAAAATACGTGAAAAATACAGTACTGTATTAGTTATCCTTGGGTTTGACTAGTGCAGTCAGCAAACTGTCGCTGTTCATTCGACTCTCACTATCGCTGAATTTGGCCAGTAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGGTTATACCATTTACCTATCA</pcr_primer_p1>
		<pcr_primer_p2>CAAACCCAAGGATAACTAATACA</pcr_primer_p2>
		<pcr_amplicon_size>487</pcr_amplicon_size>
		<canonical_amplicon>TTTGGTTATACCATTTACCTATCAATCTTGAGTATCTAACTCTGTGCTAACCGAAACGTGTTCCAACATCATTTATTGTTTTAACATAGTCTCAAGGAGCGTTTTCTCCAGTTGATTTTCTGCCATATTGACCATTTTCAAGTTTCCGATCATTTTGAAAGTTTTGGATATGAAAGAGACCTAGATTATTTTGGGAAATCGGTAGTTTTTCAGCTATTTGTCTTTTTTAGCAAGAAACCTGTACAAAAACTGGTCAAAACCTTTGTCTTTCAAAAAAAAAAGCAAACAGCTGAAAACTAGGAATTTTCAAAAAATGTTGTGAATGGAAAGTTTTCATTCGAGGTCTGTTTTACCCCATTTCAAAACTTTCAAAGTGGTAGGAAACTTGACAGTCGAGCTCCAGACTCTTTTAAATAGACAGAATGACCAAACATCATCTGGAAAATACGTGAAAAATACAGTACTGTATTAGTTATCCTTGGGTTTG</canonical_amplicon>
		<polymorphic_amplicon>TTTGGTTATACCATTTACCTATCAATCTTGAGTATCTAACTCTGTGCTAACCGRAACGTGTTCCAACATCATTTATTGTTTTAACATAGTCTCAAGGAGCGTTTTCTCCAGTTGATTTTCTGCCATATTGACCATTTTCAAGTTTCCGATCATTTTGAAAGTTTTGGATATGAAAGAGACCTAGATTATTTTGGGAAATCGGTAGTTTTTCAGCTATTTGTCTTTTTTAGCAAGAAACCTGTACAAAAACTGGTCAAAACCTTTGTCTTTCAAAAAAAAAAGCAAACAGCTGAAAACTAGGAATTTTCAAAAAATGTTGTGAATGGAAAGTTTTCATTCGAGGTCTGTTTTACCCCATTTCAAAACTTTCAAAGTGGTAGGAAACTTGACAGTCGAGCTCCAGACTCTTTTAAATAGACAGAATGACCAAACATCATCTGGAAAATACGTGAAAAATACAGTACTGTATTAGTTATCCTTGGGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20572</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1181618</contig_pos>
        <strand>+</strand>
        <context>TTATCAAAAA[A/T]TGTTTACCGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTTTTTGATATTTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAA</left_flank>
        <right_flank>TGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTTATAATTTCGAAAAAATATTTACATTCCTCTTTCTCTAATTACATATTTACAGAAAATATGAATATTGAGAAAGACGAGGAAGACGTGCCGCCGACGAGATGGGAGAATATTGTAGAATTCATCATGTTCCGCTTCCGATGGCTCTTTGTTGTCCCATTCCTGCTTCCACTATCGTTCCTCTTCAATACTGTCTTCGATATCAGGAATCGGCTGATTCATTTGGTCAACTCGGCGCCAAACGCTCATGTGAGAAAAGTCAACTACATTCAGGAGCAGGTAAATACATTCTCTGGAAAATCAGAAATTATTTAATTTTTATAGCTCAAAGAATGGAATGAGAATGGAAGGAAGACAAAATTGGTAAACGCTCGTCCAGGATGGCTCACAATGAGTTTCAGATTCCCACTGTACAAGGAAAATGCGACGAAAATTGCCACTGATAAGCTTTTTGATATTTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAAATGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAAGTATTTATCATAATATCACCAATATTTTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAAATCGAGTTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCAACAAAAAGTTTACTGCAGCAAACAAGGGTATTTTCACTTTGAGCCAATTTATCTCGGTTCCTGGAAAATATATTAAAAAGGAATCAACTGATAAATTATTCGTCATAACATCACTAATATTTTATCTGTTGACAAGTTTTCGATATCTTTCATAGGAATCGAGATAATCGAGCTCAAAGTTGAAAGCTCGGTTTCATCTAATAAACGAAATACGGTATTTTGGTTTTAACAAAAACGAAATTTTCAAATTACAAAATACATTTTTTCCAGCTCGACGTAGAAAGGAT</canonical>
            <polymorphic>TTTCTTATAATTTCGAAAAAATATTTACATTCCTCTTTCTCTAATTACATATTTACAGAAAATATGAATATTGAGAAAGACGAGGAAGACGTGCCGCCGACGAGATGGGAGAATATTGTAGAATTCATCATGTTCCGCTTCCGATGGCTCTTTGTTGTCCCATTCCTGCTTCCACTATCGTTCCTCTTCAATACTGTCTTCGATATCAGGAATCGGCTGATTCATTTGGTCAACTCGGCGCCAAACGCTCATGTGAGAAAAGTCAACTACATTCAGGAGCAGGTAAATACATTCTCTGGAAAATCAGAAATTATTTAATTTTTATAGCTCAAAGAATGGAATGAGAATGGAAGGAAGACAAAATTGGTAAACGCTCGTCCAGGATGGCTCACAATGAGTTTCAGATTCCCACTGTACAAGGAAAATGCGACGAAAATTGCCACTGATAAGCTTTTTGATATTTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAAWTGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAAGTATTTATCATAATATCACCAATATTTTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAAATCGAGTTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCAACAAAAAGTTTACTGCAGCAAACAAGGGTATTTTCACTTTGAGCCAATTTATCTCGGTTCCTGGAAAATATATTAAAAAGGAATCAACTGATAAATTATTCGTCATAACATCACTAATATTTTATCTGTTGACAAGTTTTCGATATCTTTCATAGGAATCGAGATAATCGAGCTCAAAGTTGAAAGCTCGGTTTCATCTAATAAACGAAATACGGTATTTTGGTTTTAACAAAAACGAAATTTTCAAATTACAAAATACATTTTTTCCAGCTCGACGTAGAAAGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTTTTGATATTTTGGAGGT</pcr_primer_p1>
		<pcr_primer_p2>GCAGTAAACTTTTTGTTGATGA</pcr_primer_p2>
		<pcr_amplicon_size>280</pcr_amplicon_size>
		<canonical_amplicon>GCTTTTTGATATTTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAAATGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAAGTATTTATCATAATATCACCAATATTTTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAAATCGAGTTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCAACAAAAAGTTTACTGC</canonical_amplicon>
		<polymorphic_amplicon>GCTTTTTGATATTTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAAWTGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAAGTATTTATCATAATATCACCAATATTTTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAAATCGAGTTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCAACAAAAAGTTTACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20573</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1181418</contig_pos>
        <strand>+</strand>
        <context>CATTCTCTGG[A/G]AAATCAGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATGTGAGAAAAGTCAACTACATTCAGGAGCAGGTAAATACATTCTCTGG</left_flank>
        <right_flank>AAATCAGAAATTATTTAATTTTTATAGCTCAAAGAATGGAATGAGAATGG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAGCTGTTTAGGGAGTGTGAGTAATTTGTTCTGAGTAAAAGTTGTTCAAAGTCAGGGAAAAGTCTAGATTCAATAAGGGAAATTGATTATAGGATAGCTAGAAAGAGTGACTAATGTTTTGGAAAAATATAGAGCTTCTTTATACCAGAAAATATATACAATAACAATTTGAATCCTATCCTTCAATCATTTTTTTCTTTTCTTATAATTTCGAAAAAATATTTACATTCCTCTTTCTCTAATTACATATTTACAGAAAATATGAATATTGAGAAAGACGAGGAAGACGTGCCGCCGACGAGATGGGAGAATATTGTAGAATTCATCATGTTCCGCTTCCGATGGCTCTTTGTTGTCCCATTCCTGCTTCCACTATCGTTCCTCTTCAATACTGTCTTCGATATCAGGAATCGGCTGATTCATTTGGTCAACTCGGCGCCAAACGCTCATGTGAGAAAAGTCAACTACATTCAGGAGCAGGTAAATACATTCTCTGGAAAATCAGAAATTATTTAATTTTTATAGCTCAAAGAATGGAATGAGAATGGAAGGAAGACAAAATTGGTAAACGCTCGTCCAGGATGGCTCACAATGAGTTTCAGATTCCCACTGTACAAGGAAAATGCGACGAAAATTGCCACTGATAAGCTTTTTGATATTTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAAATGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAAGTATTTATCATAATATCACCAATATTTTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAAATCGAGTTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCAACAAAAAGTTTACTGCAGCAAACAAGGGTATTTTCACTTTGAGCCAATTTATCTCGGTTCCTGGAAAATATATTAAAAAGGAATCAA</canonical>
            <polymorphic>TTGAGCTGTTTAGGGAGTGTGAGTAATTTGTTCTGAGTAAAAGTTGTTCAAAGTCAGGGAAAAGTCTAGATTCAATAAGGGAAATTGATTATAGGATAGCTAGAAAGAGTGACTAATGTTTTGGAAAAATATAGAGCTTCTTTATACCAGAAAATATATACAATAACAATTTGAATCCTATCCTTCAATCATTTTTTTCTTTTCTTATAATTTCGAAAAAATATTTACATTCCTCTTTCTCTAATTACATATTTACAGAAAATATGAATATTGAGAAAGACGAGGAAGACGTGCCGCCGACGAGATGGGAGAATATTGTAGAATTCATCATGTTCCGCTTCCGATGGCTCTTTGTTGTCCCATTCCTGCTTCCACTATCGTTCCTCTTCAATACTGTCTTCGATATCAGGAATCGGCTGATTCATTTGGTCAACTCGGCGCCAAACGCTCATGTGAGAAAAGTCAACTACATTCAGGAGCAGGTAAATACATTCTCTGGRAAATCAGAAATTATTTAATTTTTATAGCTCAAAGAATGGAATGAGAATGGAAGGAAGACAAAATTGGTAAACGCTCGTCCAGGATGGCTCACAATGAGTTTCAGATTCCCACTGTACAAGGAAAATGCGACGAAAATTGCCACTGATAAGCTTTTTGATATTTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAAATGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAAGTATTTATCATAATATCACCAATATTTTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAAATCGAGTTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCAACAAAAAGTTTACTGCAGCAAACAAGGGTATTTTCACTTTGAGCCAATTTATCTCGGTTCCTGGAAAATATATTAAAAAGGAATCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>341 240 164 100 67 66 22</canonical_bands>
                <polymorphic_bands>341 262 164 100 67 66</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCGTTCCTCTTCAATACTGTC</pcr_primer_p1>
		<pcr_primer_p2>GTACAGTGGGAATCTGAAACTC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TATCGTTCCTCTTCAATACTGTCTTCGATATCAGGAATCGGCTGATTCATTTGGTCAACTCGGCGCCAAACGCTCATGTGAGAAAAGTCAACTACATTCAGGAGCAGGTAAATACATTCTCTGGAAAATCAGAAATTATTTAATTTTTATAGCTCAAAGAATGGAATGAGAATGGAAGGAAGACAAAATTGGTAAACGCTCGTCCAGGATGGCTCACAATGAGTTTCAGATTCCCACTGTAC</canonical_amplicon>
		<polymorphic_amplicon>TATCGTTCCTCTTCAATACTGTCTTCGATATCAGGAATCGGCTGATTCATTTGGTCAACTCGGCGCCAAACGCTCATGTGAGAAAAGTCAACTACATTCAGGAGCAGGTAAATACATTCTCTGGRAAATCAGAAATTATTTAATTTTTATAGCTCAAAGAATGGAATGAGAATGGAAGGAAGACAAAATTGGTAAACGCTCGTCCAGGATGGCTCACAATGAGTTTCAGATTCCCACTGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20574</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1204710</contig_pos>
        <strand>+</strand>
        <context>ACCAATTTTT[C/T]GTATTTTCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAATTGGACTTGTTGAATCATTCTAATTCAATTTTTGTACCAATTTTT</left_flank>
        <right_flank>GTATTTTCCGAACCGATGTCTTGCAATAATCCTTCTGTCCTTTTACGAGT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAATTAACCAATAAATTCAACTAAATTATTTCTTTTTTTTCTCTATTTTTTGTTTTGAAAATTGTAATAGATGAGTCCACTCATTGTCACGTTTGAGTTGAAAAATTTAAATTTCTATGAAAATTATTTATAACTTTGTATACCATAAAACCTGTAATAGAAGAGCCCCCTGCCTTTGAGCAATTTTATCTTGGTAGCTATGAAAAATATAAAAAACCTATTCACTGATAAAATGTTGGTGATTTTATAATTAACATTTTCCCAGTTGTCCACTTTTTGGAATCTTTCACAGTAACCAAGATGAATGGGGCTTACAGTTACAAGTAGAGGAACGTAATATTACCGGTTTTACGGTACACAAACATTTGAATCAATATGATTTTTTTAATTATAAGATCATTTTACAAAAAAATAAATTTTCTGGTACCGGAAGATCAACTTAAAGTGAGAAATTGGACTTGTTGAATCATTCTAATTCAATTTTTGTACCAATTTTTTGTATTTTCCGAACCGATGTCTTGCAATAATCCTTCTGTCCTTTTACGAGTCAGTTACAGCCAAACCACAACTCTGGTCAAAACTTCAGATGACGTGGACGTCATGGGTCGGGCCAGAATCGCTAGAAAATTTCTAGTGGCTTGTTTCTTTGTTTCTTCTCACTGCAGTGAACAGTGTAAAAATTTTATAAAAGTTCTACTAGCCCGATCGACGGGTCAGCCTTTACAATCACTAGTCGAAAAATGACGTGATTCATTTTGAATTTCAGCTTCCAAACGTTTTCTTAAACTCCCACATAGCCAACATGACTTTTGGAATAATCTTTCTAGTGAAATCATGGGTCTTATCTCGAAATCCAAAACCCATGAGCCGATGTATCACTGATGCTATCCAAAAACCGAAAAGGAGCCCATAAGGAGAGGATGAAATCCAACCTTTTCGGCAAACATCATCTATTATTTGTAAAAAACGGCGGCTGATCTTGTGTTTTTTTACCCTTC</canonical>
            <polymorphic>TTTAATTAACCAATAAATTCAACTAAATTATTTCTTTTTTTTCTCTATTTTTTGTTTTGAAAATTGTAATAGATGAGTCCACTCATTGTCACGTTTGAGTTGAAAAATTTAAATTTCTATGAAAATTATTTATAACTTTGTATACCATAAAACCTGTAATAGAAGAGCCCCCTGCCTTTGAGCAATTTTATCTTGGTAGCTATGAAAAATATAAAAAACCTATTCACTGATAAAATGTTGGTGATTTTATAATTAACATTTTCCCAGTTGTCCACTTTTTGGAATCTTTCACAGTAACCAAGATGAATGGGGCTTACAGTTACAAGTAGAGGAACGTAATATTACCGGTTTTACGGTACACAAACATTTGAATCAATATGATTTTTTTAATTATAAGATCATTTTACAAAAAAATAAATTTTCTGGTACCGGAAGATCAACTTAAAGTGAGAAATTGGACTTGTTGAATCATTCTAATTCAATTTTTGTACCAATTTTTYGTATTTTCCGAACCGATGTCTTGCAATAATCCTTCTGTCCTTTTACGAGTCAGTTACAGCCAAACCACAACTCTGGTCAAAACTTCAGATGACGTGGACGTCATGGGTCGGGCCAGAATCGCTAGAAAATTTCTAGTGGCTTGTTTCTTTGTTTCTTCTCACTGCAGTGAACAGTGTAAAAATTTTATAAAAGTTCTACTAGCCCGATCGACGGGTCAGCCTTTACAATCACTAGTCGAAAAATGACGTGATTCATTTTGAATTTCAGCTTCCAAACGTTTTCTTAAACTCCCACATAGCCAACATGACTTTTGGAATAATCTTTCTAGTGAAATCATGGGTCTTATCTCGAAATCCAAAACCCATGAGCCGATGTATCACTGATGCTATCCAAAAACCGAAAAGGAGCCCATAAGGAGAGGATGAAATCCAACCTTTTCGGCAAACATCATCTATTATTTGTAAAAAACGGCGGCTGATCTTGTGTTTTTTTACCCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACTTAAAGTGAGAAATTGGAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTTTTACACTGTTCACTGC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAACTTAAAGTGAGAAATTGGACTTGTTGAATCATTCTAATTCAATTTTTGTACCAATTTTTTGTATTTTCCGAACCGATGTCTTGCAATAATCCTTCTGTCCTTTTACGAGTCAGTTACAGCCAAACCACAACTCTGGTCAAAACTTCAGATGACGTGGACGTCATGGGTCGGGCCAGAATCGCTAGAAAATTTCTAGTGGCTTGTTTCTTTGTTTCTTCTCACTGCAGTGAACAGTGTAAAAATTTT</canonical_amplicon>
		<polymorphic_amplicon>CAACTTAAAGTGAGAAATTGGACTTGTTGAATCATTCTAATTCAATTTTTGTACCAATTTTTYGTATTTTCCGAACCGATGTCTTGCAATAATCCTTCTGTCCTTTTACGAGTCAGTTACAGCCAAACCACAACTCTGGTCAAAACTTCAGATGACGTGGACGTCATGGGTCGGGCCAGAATCGCTAGAAAATTTCTAGTGGCTTGTTTCTTTGTTTCTTCTCACTGCAGTGAACAGTGTAAAAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20575</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1204809</contig_pos>
        <strand>+</strand>
        <context>ATGACGTGGA[A/C]GTCATGGGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTCAGTTACAGCCAAACCACAACTCTGGTCAAAACTTCAGATGACGTGGA</left_flank>
        <right_flank>GTCATGGGTCGGGCCAGAATCGCTAGAAAATTTCTAGTGGCTTGTTTCTT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAAAAATTTAAATTTCTATGAAAATTATTTATAACTTTGTATACCATAAAACCTGTAATAGAAGAGCCCCCTGCCTTTGAGCAATTTTATCTTGGTAGCTATGAAAAATATAAAAAACCTATTCACTGATAAAATGTTGGTGATTTTATAATTAACATTTTCCCAGTTGTCCACTTTTTGGAATCTTTCACAGTAACCAAGATGAATGGGGCTTACAGTTACAAGTAGAGGAACGTAATATTACCGGTTTTACGGTACACAAACATTTGAATCAATATGATTTTTTTAATTATAAGATCATTTTACAAAAAAATAAATTTTCTGGTACCGGAAGATCAACTTAAAGTGAGAAATTGGACTTGTTGAATCATTCTAATTCAATTTTTGTACCAATTTTTTGTATTTTCCGAACCGATGTCTTGCAATAATCCTTCTGTCCTTTTACGAGTCAGTTACAGCCAAACCACAACTCTGGTCAAAACTTCAGATGACGTGGACGTCATGGGTCGGGCCAGAATCGCTAGAAAATTTCTAGTGGCTTGTTTCTTTGTTTCTTCTCACTGCAGTGAACAGTGTAAAAATTTTATAAAAGTTCTACTAGCCCGATCGACGGGTCAGCCTTTACAATCACTAGTCGAAAAATGACGTGATTCATTTTGAATTTCAGCTTCCAAACGTTTTCTTAAACTCCCACATAGCCAACATGACTTTTGGAATAATCTTTCTAGTGAAATCATGGGTCTTATCTCGAAATCCAAAACCCATGAGCCGATGTATCACTGATGCTATCCAAAAACCGAAAAGGAGCCCATAAGGAGAGGATGAAATCCAACCTTTTCGGCAAACATCATCTATTATTTGTAAAAAACGGCGGCTGATCTTGTGTTTTTTTACCCTTCCGACTCAAGGCCAGCATAGTTTCAATACCCACACACACACACGCATTTCAGCATTTTTATCTTCTTATTTTCTAACTTGATCTTAAATGTATATGATGT</canonical>
            <polymorphic>TTGAAAAATTTAAATTTCTATGAAAATTATTTATAACTTTGTATACCATAAAACCTGTAATAGAAGAGCCCCCTGCCTTTGAGCAATTTTATCTTGGTAGCTATGAAAAATATAAAAAACCTATTCACTGATAAAATGTTGGTGATTTTATAATTAACATTTTCCCAGTTGTCCACTTTTTGGAATCTTTCACAGTAACCAAGATGAATGGGGCTTACAGTTACAAGTAGAGGAACGTAATATTACCGGTTTTACGGTACACAAACATTTGAATCAATATGATTTTTTTAATTATAAGATCATTTTACAAAAAAATAAATTTTCTGGTACCGGAAGATCAACTTAAAGTGAGAAATTGGACTTGTTGAATCATTCTAATTCAATTTTTGTACCAATTTTTTGTATTTTCCGAACCGATGTCTTGCAATAATCCTTCTGTCCTTTTACGAGTCAGTTACAGCCAAACCACAACTCTGGTCAAAACTTCAGATGACGTGGAMGTCATGGGTCGGGCCAGAATCGCTAGAAAATTTCTAGTGGCTTGTTTCTTTGTTTCTTCTCACTGCAGTGAACAGTGTAAAAATTTTATAAAAGTTCTACTAGCCCGATCGACGGGTCAGCCTTTACAATCACTAGTCGAAAAATGACGTGATTCATTTTGAATTTCAGCTTCCAAACGTTTTCTTAAACTCCCACATAGCCAACATGACTTTTGGAATAATCTTTCTAGTGAAATCATGGGTCTTATCTCGAAATCCAAAACCCATGAGCCGATGTATCACTGATGCTATCCAAAAACCGAAAAGGAGCCCATAAGGAGAGGATGAAATCCAACCTTTTCGGCAAACATCATCTATTATTTGTAAAAAACGGCGGCTGATCTTGTGTTTTTTTACCCTTCCGACTCAAGGCCAGCATAGTTTCAATACCCACACACACACACGCATTTCAGCATTTTTATCTTCTTATTTTCTAACTTGATCTTAAATGTATATGATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACGTC</site>
                <isoschizomers>
                    <enzyme>AatII</enzyme>
                    <enzyme>ZraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>430 238 130 86 73 43</canonical_bands>
                <polymorphic_bands>430 311 130 86 43</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>323 258 235 148 30 6</canonical_bands>
                <polymorphic_bands>323 258 235 154 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACTTAAAGTGAGAAATTGGAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTTTTACACTGTTCACTGC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAACTTAAAGTGAGAAATTGGACTTGTTGAATCATTCTAATTCAATTTTTGTACCAATTTTTTGTATTTTCCGAACCGATGTCTTGCAATAATCCTTCTGTCCTTTTACGAGTCAGTTACAGCCAAACCACAACTCTGGTCAAAACTTCAGATGACGTGGACGTCATGGGTCGGGCCAGAATCGCTAGAAAATTTCTAGTGGCTTGTTTCTTTGTTTCTTCTCACTGCAGTGAACAGTGTAAAAATTTT</canonical_amplicon>
		<polymorphic_amplicon>CAACTTAAAGTGAGAAATTGGACTTGTTGAATCATTCTAATTCAATTTTTGTACCAATTTTTTGTATTTTCCGAACCGATGTCTTGCAATAATCCTTCTGTCCTTTTACGAGTCAGTTACAGCCAAACCACAACTCTGGTCAAAACTTCAGATGACGTGGAMGTCATGGGTCGGGCCAGAATCGCTAGAAAATTTCTAGTGGCTTGTTTCTTTGTTTCTTCTCACTGCAGTGAACAGTGTAAAAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20576</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1204920</contig_pos>
        <strand>+</strand>
        <context>TAGCCCGATC[A/G]ACGGGTCAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACTGCAGTGAACAGTGTAAAAATTTTATAAAAGTTCTACTAGCCCGATC</left_flank>
        <right_flank>ACGGGTCAGCCTTTACAATCACTAGTCGAAAAATGACGTGATTCATTTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAAAAACCTATTCACTGATAAAATGTTGGTGATTTTATAATTAACATTTTCCCAGTTGTCCACTTTTTGGAATCTTTCACAGTAACCAAGATGAATGGGGCTTACAGTTACAAGTAGAGGAACGTAATATTACCGGTTTTACGGTACACAAACATTTGAATCAATATGATTTTTTTAATTATAAGATCATTTTACAAAAAAATAAATTTTCTGGTACCGGAAGATCAACTTAAAGTGAGAAATTGGACTTGTTGAATCATTCTAATTCAATTTTTGTACCAATTTTTTGTATTTTCCGAACCGATGTCTTGCAATAATCCTTCTGTCCTTTTACGAGTCAGTTACAGCCAAACCACAACTCTGGTCAAAACTTCAGATGACGTGGACGTCATGGGTCGGGCCAGAATCGCTAGAAAATTTCTAGTGGCTTGTTTCTTTGTTTCTTCTCACTGCAGTGAACAGTGTAAAAATTTTATAAAAGTTCTACTAGCCCGATCGACGGGTCAGCCTTTACAATCACTAGTCGAAAAATGACGTGATTCATTTTGAATTTCAGCTTCCAAACGTTTTCTTAAACTCCCACATAGCCAACATGACTTTTGGAATAATCTTTCTAGTGAAATCATGGGTCTTATCTCGAAATCCAAAACCCATGAGCCGATGTATCACTGATGCTATCCAAAAACCGAAAAGGAGCCCATAAGGAGAGGATGAAATCCAACCTTTTCGGCAAACATCATCTATTATTTGTAAAAAACGGCGGCTGATCTTGTGTTTTTTTACCCTTCCGACTCAAGGCCAGCATAGTTTCAATACCCACACACACACACGCATTTCAGCATTTTTATCTTCTTATTTTCTAACTTGATCTTAAATGTATATGATGTCGTGAGCTGAACTCCAACATCCGGTGATTAATGTTCGCTTCGAATAGTCATGAATAAGTTATGCGCCTGGTTTCGGTTTTTTTCCTTCCCAAAGCATAGGATATATTCCAG</canonical>
            <polymorphic>ATAAAAAACCTATTCACTGATAAAATGTTGGTGATTTTATAATTAACATTTTCCCAGTTGTCCACTTTTTGGAATCTTTCACAGTAACCAAGATGAATGGGGCTTACAGTTACAAGTAGAGGAACGTAATATTACCGGTTTTACGGTACACAAACATTTGAATCAATATGATTTTTTTAATTATAAGATCATTTTACAAAAAAATAAATTTTCTGGTACCGGAAGATCAACTTAAAGTGAGAAATTGGACTTGTTGAATCATTCTAATTCAATTTTTGTACCAATTTTTTGTATTTTCCGAACCGATGTCTTGCAATAATCCTTCTGTCCTTTTACGAGTCAGTTACAGCCAAACCACAACTCTGGTCAAAACTTCAGATGACGTGGACGTCATGGGTCGGGCCAGAATCGCTAGAAAATTTCTAGTGGCTTGTTTCTTTGTTTCTTCTCACTGCAGTGAACAGTGTAAAAATTTTATAAAAGTTCTACTAGCCCGATCRACGGGTCAGCCTTTACAATCACTAGTCGAAAAATGACGTGATTCATTTTGAATTTCAGCTTCCAAACGTTTTCTTAAACTCCCACATAGCCAACATGACTTTTGGAATAATCTTTCTAGTGAAATCATGGGTCTTATCTCGAAATCCAAAACCCATGAGCCGATGTATCACTGATGCTATCCAAAAACCGAAAAGGAGCCCATAAGGAGAGGATGAAATCCAACCTTTTCGGCAAACATCATCTATTATTTGTAAAAAACGGCGGCTGATCTTGTGTTTTTTTACCCTTCCGACTCAAGGCCAGCATAGTTTCAATACCCACACACACACACGCATTTCAGCATTTTTATCTTCTTATTTTCTAACTTGATCTTAAATGTATATGATGTCGTGAGCTGAACTCCAACATCCGGTGATTAATGTTCGCTTCGAATAGTCATGAATAAGTTATGCGCCTGGTTTCGGTTTTTTTCCTTCCCAAAGCATAGGATATATTCCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CGATCG</site>
                <isoschizomers>
                    <enzyme>BspCI</enzyme>
                    <enzyme>Ple19I</enzyme>
                    <enzyme>PvuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 290 113 70 28</canonical_bands>
                <polymorphic_bands>527 290 113 70</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTTGCAATAATCCTTCTGTC</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCAAAATGAATCACGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCTTGCAATAATCCTTCTGTCCTTTTACGAGTCAGTTACAGCCAAACCACAACTCTGGTCAAAACTTCAGATGACGTGGACGTCATGGGTCGGGCCAGAATCGCTAGAAAATTTCTAGTGGCTTGTTTCTTTGTTTCTTCTCACTGCAGTGAACAGTGTAAAAATTTTATAAAAGTTCTACTAGCCCGATCGACGGGTCAGCCTTTACAATCACTAGTCGAAAAATGACGTGATTCATTTTGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>GTCTTGCAATAATCCTTCTGTCCTTTTACGAGTCAGTTACAGCCAAACCACAACTCTGGTCAAAACTTCAGATGACGTGGACGTCATGGGTCGGGCCAGAATCGCTAGAAAATTTCTAGTGGCTTGTTTCTTTGTTTCTTCTCACTGCAGTGAACAGTGTAAAAATTTTATAAAAGTTCTACTAGCCCGATCRACGGGTCAGCCTTTACAATCACTAGTCGAAAAATGACGTGATTCATTTTGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20577</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1207414</contig_pos>
        <strand>+</strand>
        <context>GAGCAAGAGT[A/G]TTATTACGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCTGGTTCGATCTTTTCCAATTGGAGTTTTAAGTTTTTTGAGCAAGAGT</left_flank>
        <right_flank>TTATTACGATTATGAACTGAGCATTGATTCGTTCGGTTGATTCGGAACTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGCGCATCAAAAATCAATTCGCGAGGGAGAAGACGCCGAGGGTTCATCAGAGATCAGCAAAGCTGATAACAAGGAGGCCGGAAAAGAGCAAGAGCCGGAAGAGGATGACGAGAAGTGAATCTCTGATTTAAAAATTTTTTGTACACACCGTGTTCCCATTAACCCTATTTTTTGTATAAACAATATAAGAAATTTGTGTAAACGTTTGTACTTTGAACACAATTTCGAACAATGAGCAAGCTATGAATAAAATTGTCAGCCTTCAATATAAATTCAAATTTTTGGCTTCAAAAGATATTATGGAAAAAATATAGAAAAAATAATGAGAAGAAATATTTGACTTTTCAAAATAAGAAATGGATATATGAAAAGAAAAGTGGTCTGTTTCCAGTTAGTCTTAAACGAACTTTAAATGCTTCAAAAGTTGAAAATTCAACAGGTTTAGTGTAGCTGGTTCGATCTTTTCCAATTGGAGTTTTAAGTTTTTTGAGCAAGAGTGTTATTACGATTATGAACTGAGCATTGATTCGTTCGGTTGATTCGGAACTGAGTATTGATTCAGTGACGGTGTAGAGCTTTTAGTATTTTTCAACTGGTAAGATTTTTTGAATGACATTTCAAAATGTCAAACAAAACAACATTTTCATTTTACATCCACATACAGTAAAACCTCTTATAGAAGCAATGATTATGCACGTTGAACCGAATTATCTCACATGTCAGTTTCTTTGAAAGATATAAAAAATCTGTCAACTGATAAAACATTAGTGATAACATTAGATGAGATATAGGAGCTTAAAGTTGACGGTTCGAGAGTCATTCTAATACTGTGTTTACGGTATCTTTTTAAAAATAGTAGCGATGTAGCGCTTTGAGGCCTTAAGATTTACTCCAATGTCAAAATAGTAAAGAACAAGCATTCTCTTGTTCTTGTTCCAATGTAACACACGGATGACACATCAAGAATTTGACCGGGTCCGCAAGGGACCCATGCAAAAC</canonical>
            <polymorphic>TGGCGCATCAAAAATCAATTCGCGAGGGAGAAGACGCCGAGGGTTCATCAGAGATCAGCAAAGCTGATAACAAGGAGGCCGGAAAAGAGCAAGAGCCGGAAGAGGATGACGAGAAGTGAATCTCTGATTTAAAAATTTTTTGTACACACCGTGTTCCCATTAACCCTATTTTTTGTATAAACAATATAAGAAATTTGTGTAAACGTTTGTACTTTGAACACAATTTCGAACAATGAGCAAGCTATGAATAAAATTGTCAGCCTTCAATATAAATTCAAATTTTTGGCTTCAAAAGATATTATGGAAAAAATATAGAAAAAATAATGAGAAGAAATATTTGACTTTTCAAAATAAGAAATGGATATATGAAAAGAAAAGTGGTCTGTTTCCAGTTAGTCTTAAACGAACTTTAAATGCTTCAAAAGTTGAAAATTCAACAGGTTTAGTGTAGCTGGTTCGATCTTTTCCAATTGGAGTTTTAAGTTTTTTGAGCAAGAGTRTTATTACGATTATGAACTGAGCATTGATTCGTTCGGTTGATTCGGAACTGAGTATTGATTCAGTGACGGTGTAGAGCTTTTAGTATTTTTCAACTGGTAAGATTTTTTGAATGACATTTCAAAATGTCAAACAAAACAACATTTTCATTTTACATCCACATACAGTAAAACCTCTTATAGAAGCAATGATTATGCACGTTGAACCGAATTATCTCACATGTCAGTTTCTTTGAAAGATATAAAAAATCTGTCAACTGATAAAACATTAGTGATAACATTAGATGAGATATAGGAGCTTAAAGTTGACGGTTCGAGAGTCATTCTAATACTGTGTTTACGGTATCTTTTTAAAAATAGTAGCGATGTAGCGCTTTGAGGCCTTAAGATTTACTCCAATGTCAAAATAGTAAAGAACAAGCATTCTCTTGTTCTTGTTCCAATGTAACACACGGATGACACATCAAGAATTTGACCGGGTCCGCAAGGGACCCATGCAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>160 118 114 87 68 65 62 55 52 46 42 38 28 21 20 9 6 5 2 2</canonical_bands>
                <polymorphic_bands>160 118 117 114 87 68 62 55 46 42 38 28 21 20 9 6 5 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGATATATGAAAAGAAAAGTGG</pcr_primer_p1>
		<pcr_primer_p2>AAAAATCTTACCAGTTGAAAAATAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGGATATATGAAAAGAAAAGTGGTCTGTTTCCAGTTAGTCTTAAACGAACTTTAAATGCTTCAAAAGTTGAAAATTCAACAGGTTTAGTGTAGCTGGTTCGATCTTTTCCAATTGGAGTTTTAAGTTTTTTGAGCAAGAGTGTTATTACGATTATGAACTGAGCATTGATTCGTTCGGTTGATTCGGAACTGAGTATTGATTCAGTGACGGTGTAGAGCTTTTAGTATTTTTCAACTGGTAAGATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TGGATATATGAAAAGAAAAGTGGTCTGTTTCCAGTTAGTCTTAAACGAACTTTAAATGCTTCAAAAGTTGAAAATTCAACAGGTTTAGTGTAGCTGGTTCGATCTTTTCCAATTGGAGTTTTAAGTTTTTTGAGCAAGAGTRTTATTACGATTATGAACTGAGCATTGATTCGTTCGGTTGATTCGGAACTGAGTATTGATTCAGTGACGGTGTAGAGCTTTTAGTATTTTTCAACTGGTAAGATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20578</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1207331</contig_pos>
        <strand>+</strand>
        <context>ACTTTAAATG[C/T]TTCAAAAGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAAAGAAAAGTGGTCTGTTTCCAGTTAGTCTTAAACGAACTTTAAATG</left_flank>
        <right_flank>TTCAAAAGTTGAAAATTCAACAGGTTTAGTGTAGCTGGTTCGATCTTTTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCATCGATTCTGAAAATCAAAATCATTTTTCAAAATCTCAGATCCAACAAGACCTCAAGTGTTGGTGCCAAACGCAAGATGATGGCGCATCAAAAATCAATTCGCGAGGGAGAAGACGCCGAGGGTTCATCAGAGATCAGCAAAGCTGATAACAAGGAGGCCGGAAAAGAGCAAGAGCCGGAAGAGGATGACGAGAAGTGAATCTCTGATTTAAAAATTTTTTGTACACACCGTGTTCCCATTAACCCTATTTTTTGTATAAACAATATAAGAAATTTGTGTAAACGTTTGTACTTTGAACACAATTTCGAACAATGAGCAAGCTATGAATAAAATTGTCAGCCTTCAATATAAATTCAAATTTTTGGCTTCAAAAGATATTATGGAAAAAATATAGAAAAAATAATGAGAAGAAATATTTGACTTTTCAAAATAAGAAATGGATATATGAAAAGAAAAGTGGTCTGTTTCCAGTTAGTCTTAAACGAACTTTAAATGCTTCAAAAGTTGAAAATTCAACAGGTTTAGTGTAGCTGGTTCGATCTTTTCCAATTGGAGTTTTAAGTTTTTTGAGCAAGAGTGTTATTACGATTATGAACTGAGCATTGATTCGTTCGGTTGATTCGGAACTGAGTATTGATTCAGTGACGGTGTAGAGCTTTTAGTATTTTTCAACTGGTAAGATTTTTTGAATGACATTTCAAAATGTCAAACAAAACAACATTTTCATTTTACATCCACATACAGTAAAACCTCTTATAGAAGCAATGATTATGCACGTTGAACCGAATTATCTCACATGTCAGTTTCTTTGAAAGATATAAAAAATCTGTCAACTGATAAAACATTAGTGATAACATTAGATGAGATATAGGAGCTTAAAGTTGACGGTTCGAGAGTCATTCTAATACTGTGTTTACGGTATCTTTTTAAAAATAGTAGCGATGTAGCGCTTTGAGGCCTTAAGATTTACTCCAATGTCAAAATAGTAAAGAACAA</canonical>
            <polymorphic>GTCATCGATTCTGAAAATCAAAATCATTTTTCAAAATCTCAGATCCAACAAGACCTCAAGTGTTGGTGCCAAACGCAAGATGATGGCGCATCAAAAATCAATTCGCGAGGGAGAAGACGCCGAGGGTTCATCAGAGATCAGCAAAGCTGATAACAAGGAGGCCGGAAAAGAGCAAGAGCCGGAAGAGGATGACGAGAAGTGAATCTCTGATTTAAAAATTTTTTGTACACACCGTGTTCCCATTAACCCTATTTTTTGTATAAACAATATAAGAAATTTGTGTAAACGTTTGTACTTTGAACACAATTTCGAACAATGAGCAAGCTATGAATAAAATTGTCAGCCTTCAATATAAATTCAAATTTTTGGCTTCAAAAGATATTATGGAAAAAATATAGAAAAAATAATGAGAAGAAATATTTGACTTTTCAAAATAAGAAATGGATATATGAAAAGAAAAGTGGTCTGTTTCCAGTTAGTCTTAAACGAACTTTAAATGYTTCAAAAGTTGAAAATTCAACAGGTTTAGTGTAGCTGGTTCGATCTTTTCCAATTGGAGTTTTAAGTTTTTTGAGCAAGAGTGTTATTACGATTATGAACTGAGCATTGATTCGTTCGGTTGATTCGGAACTGAGTATTGATTCAGTGACGGTGTAGAGCTTTTAGTATTTTTCAACTGGTAAGATTTTTTGAATGACATTTCAAAATGTCAAACAAAACAACATTTTCATTTTACATCCACATACAGTAAAACCTCTTATAGAAGCAATGATTATGCACGTTGAACCGAATTATCTCACATGTCAGTTTCTTTGAAAGATATAAAAAATCTGTCAACTGATAAAACATTAGTGATAACATTAGATGAGATATAGGAGCTTAAAGTTGACGGTTCGAGAGTCATTCTAATACTGTGTTTACGGTATCTTTTTAAAAATAGTAGCGATGTAGCGCTTTGAGGCCTTAAGATTTACTCCAATGTCAAAATAGTAAAGAACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGATATATGAAAAGAAAAGTGG</pcr_primer_p1>
		<pcr_primer_p2>AAAAATCTTACCAGTTGAAAAATAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGGATATATGAAAAGAAAAGTGGTCTGTTTCCAGTTAGTCTTAAACGAACTTTAAATGCTTCAAAAGTTGAAAATTCAACAGGTTTAGTGTAGCTGGTTCGATCTTTTCCAATTGGAGTTTTAAGTTTTTTGAGCAAGAGTGTTATTACGATTATGAACTGAGCATTGATTCGTTCGGTTGATTCGGAACTGAGTATTGATTCAGTGACGGTGTAGAGCTTTTAGTATTTTTCAACTGGTAAGATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TGGATATATGAAAAGAAAAGTGGTCTGTTTCCAGTTAGTCTTAAACGAACTTTAAATGYTTCAAAAGTTGAAAATTCAACAGGTTTAGTGTAGCTGGTTCGATCTTTTCCAATTGGAGTTTTAAGTTTTTTGAGCAAGAGTGTTATTACGATTATGAACTGAGCATTGATTCGTTCGGTTGATTCGGAACTGAGTATTGATTCAGTGACGGTGTAGAGCTTTTAGTATTTTTCAACTGGTAAGATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20579</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1207313</contig_pos>
        <strand>+</strand>
        <context>CCAGTTAGTC[G/T]TAAACGAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATAAGAAATGGATATATGAAAAGAAAAGTGGTCTGTTTCCAGTTAGTC</left_flank>
        <right_flank>TAAACGAACTTTAAATGCTTCAAAAGTTGAAAATTCAACAGGTTTAGTGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCTTCCAATCCAGTGAGTCATCGATTCTGAAAATCAAAATCATTTTTCAAAATCTCAGATCCAACAAGACCTCAAGTGTTGGTGCCAAACGCAAGATGATGGCGCATCAAAAATCAATTCGCGAGGGAGAAGACGCCGAGGGTTCATCAGAGATCAGCAAAGCTGATAACAAGGAGGCCGGAAAAGAGCAAGAGCCGGAAGAGGATGACGAGAAGTGAATCTCTGATTTAAAAATTTTTTGTACACACCGTGTTCCCATTAACCCTATTTTTTGTATAAACAATATAAGAAATTTGTGTAAACGTTTGTACTTTGAACACAATTTCGAACAATGAGCAAGCTATGAATAAAATTGTCAGCCTTCAATATAAATTCAAATTTTTGGCTTCAAAAGATATTATGGAAAAAATATAGAAAAAATAATGAGAAGAAATATTTGACTTTTCAAAATAAGAAATGGATATATGAAAAGAAAAGTGGTCTGTTTCCAGTTAGTCTTAAACGAACTTTAAATGCTTCAAAAGTTGAAAATTCAACAGGTTTAGTGTAGCTGGTTCGATCTTTTCCAATTGGAGTTTTAAGTTTTTTGAGCAAGAGTGTTATTACGATTATGAACTGAGCATTGATTCGTTCGGTTGATTCGGAACTGAGTATTGATTCAGTGACGGTGTAGAGCTTTTAGTATTTTTCAACTGGTAAGATTTTTTGAATGACATTTCAAAATGTCAAACAAAACAACATTTTCATTTTACATCCACATACAGTAAAACCTCTTATAGAAGCAATGATTATGCACGTTGAACCGAATTATCTCACATGTCAGTTTCTTTGAAAGATATAAAAAATCTGTCAACTGATAAAACATTAGTGATAACATTAGATGAGATATAGGAGCTTAAAGTTGACGGTTCGAGAGTCATTCTAATACTGTGTTTACGGTATCTTTTTAAAAATAGTAGCGATGTAGCGCTTTGAGGCCTTAAGATTTACTCCAATGT</canonical>
            <polymorphic>AACCTTCCAATCCAGTGAGTCATCGATTCTGAAAATCAAAATCATTTTTCAAAATCTCAGATCCAACAAGACCTCAAGTGTTGGTGCCAAACGCAAGATGATGGCGCATCAAAAATCAATTCGCGAGGGAGAAGACGCCGAGGGTTCATCAGAGATCAGCAAAGCTGATAACAAGGAGGCCGGAAAAGAGCAAGAGCCGGAAGAGGATGACGAGAAGTGAATCTCTGATTTAAAAATTTTTTGTACACACCGTGTTCCCATTAACCCTATTTTTTGTATAAACAATATAAGAAATTTGTGTAAACGTTTGTACTTTGAACACAATTTCGAACAATGAGCAAGCTATGAATAAAATTGTCAGCCTTCAATATAAATTCAAATTTTTGGCTTCAAAAGATATTATGGAAAAAATATAGAAAAAATAATGAGAAGAAATATTTGACTTTTCAAAATAAGAAATGGATATATGAAAAGAAAAGTGGTCTGTTTCCAGTTAGTCKTAAACGAACTTTAAATGCTTCAAAAGTTGAAAATTCAACAGGTTTAGTGTAGCTGGTTCGATCTTTTCCAATTGGAGTTTTAAGTTTTTTGAGCAAGAGTGTTATTACGATTATGAACTGAGCATTGATTCGTTCGGTTGATTCGGAACTGAGTATTGATTCAGTGACGGTGTAGAGCTTTTAGTATTTTTCAACTGGTAAGATTTTTTGAATGACATTTCAAAATGTCAAACAAAACAACATTTTCATTTTACATCCACATACAGTAAAACCTCTTATAGAAGCAATGATTATGCACGTTGAACCGAATTATCTCACATGTCAGTTTCTTTGAAAGATATAAAAAATCTGTCAACTGATAAAACATTAGTGATAACATTAGATGAGATATAGGAGCTTAAAGTTGACGGTTCGAGAGTCATTCTAATACTGTGTTTACGGTATCTTTTTAAAAATAGTAGCGATGTAGCGCTTTGAGGCCTTAAGATTTACTCCAATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>318 239 230 69 51 33 31 18 11</canonical_bands>
                <polymorphic_bands>318 250 230 69 51 33 31 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTTTTCAAAATAAGAAATGGATA</pcr_primer_p1>
		<pcr_primer_p2>TACTAAAAGCTCTACACCGTCAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GACTTTTCAAAATAAGAAATGGATATATGAAAAGAAAAGTGGTCTGTTTCCAGTTAGTCTTAAACGAACTTTAAATGCTTCAAAAGTTGAAAATTCAACAGGTTTAGTGTAGCTGGTTCGATCTTTTCCAATTGGAGTTTTAAGTTTTTTGAGCAAGAGTGTTATTACGATTATGAACTGAGCATTGATTCGTTCGGTTGATTCGGAACTGAGTATTGATTCAGTGACGGTGTAGAGCTTTTAGTA</canonical_amplicon>
		<polymorphic_amplicon>GACTTTTCAAAATAAGAAATGGATATATGAAAAGAAAAGTGGTCTGTTTCCAGTTAGTCKTAAACGAACTTTAAATGCTTCAAAAGTTGAAAATTCAACAGGTTTAGTGTAGCTGGTTCGATCTTTTCCAATTGGAGTTTTAAGTTTTTTGAGCAAGAGTGTTATTACGATTATGAACTGAGCATTGATTCGTTCGGTTGATTCGGAACTGAGTATTGATTCAGTGACGGTGTAGAGCTTTTAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20580</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1207200</contig_pos>
        <strand>+</strand>
        <context>CAAATKTTTG[A/G]CTTCAAAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCAAGCTATGAATAAAATTGTCAGCCTTCAATATAAATTCAAATTTTTG</left_flank>
        <right_flank>CTTCAAAAGATATTATGGAAAAAATATAGAAAAAATAATGAGAAGAAATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCTCTTTCCTTCCAGAACAAACGTACACCAGTTCCACCAAAAGAGGAAGAGACCAACGAGGACAGTCTTTTTAAGTATCCAGGAGACCTTCGCGCTGTGAAACGCAAGCGGAACCTTCCAATCCAGTGAGTCATCGATTCTGAAAATCAAAATCATTTTTCAAAATCTCAGATCCAACAAGACCTCAAGTGTTGGTGCCAAACGCAAGATGATGGCGCATCAAAAATCAATTCGCGAGGGAGAAGACGCCGAGGGTTCATCAGAGATCAGCAAAGCTGATAACAAGGAGGCCGGAAAAGAGCAAGAGCCGGAAGAGGATGACGAGAAGTGAATCTCTGATTTAAAAATTTTTTGTACACACCGTGTTCCCATTAACCCTATTTTTTGTATAAACAATATAAGAAATTTGTGTAAACGTTTGTACTTTGAACACAATTTCGAACAATGAGCAAGCTATGAATAAAATTGTCAGCCTTCAATATAAATTCAAATTTTTGGCTTCAAAAGATATTATGGAAAAAATATAGAAAAAATAATGAGAAGAAATATTTGACTTTTCAAAATAAGAAATGGATATATGAAAAGAAAAGTGGTCTGTTTCCAGTTAGTCTTAAACGAACTTTAAATGCTTCAAAAGTTGAAAATTCAACAGGTTTAGTGTAGCTGGTTCGATCTTTTCCAATTGGAGTTTTAAGTTTTTTGAGCAAGAGTGTTATTACGATTATGAACTGAGCATTGATTCGTTCGGTTGATTCGGAACTGAGTATTGATTCAGTGACGGTGTAGAGCTTTTAGTATTTTTCAACTGGTAAGATTTTTTGAATGACATTTCAAAATGTCAAACAAAACAACATTTTCATTTTACATCCACATACAGTAAAACCTCTTATAGAAGCAATGATTATGCACGTTGAACCGAATTATCTCACATGTCAGTTTCTTTGAAAGATATAAAAAATCTGTCAACTGATAAAACATTAGTGATAACATTAGATGAG</canonical>
            <polymorphic>TTGCTCTTTCCTTCCAGAACAAACGTACACCAGTTCCACCAAAAGAGGAAGAGACCAACGAGGACAGTCTTTTTAAGTATCCAGGAGACCTTCGCGCTGTGAAACGCAAGCGGAACCTTCCAATCCAGTGAGTCATCGATTCTGAAAATCAAAATCATTTTTCAAAATCTCAGATCCAACAAGACCTCAAGTGTTGGTGCCAAACGCAAGATGATGGCGCATCAAAAATCAATTCGCGAGGGAGAAGACGCCGAGGGTTCATCAGAGATCAGCAAAGCTGATAACAAGGAGGCCGGAAAAGAGCAAGAGCCGGAAGAGGATGACGAGAAGTGAATCTCTGATTTAAAAATTTTTTGTACACACCGTGTTCCCATTAACCCTATTTTTTGTATAAACAATATAAGAAATTTGTGTAAACGTTTGTACTTTGAACACAATTTCGAACAATGAGCAAGCTATGAATAAAATTGTCAGCCTTCAATATAAATTCAAATTTTTGRCTTCAAAAGATATTATGGAAAAAATATAGAAAAAATAATGAGAAGAAATATTTGACTTTTCAAAATAAGAAATGGATATATGAAAAGAAAAGTGGTCTGTTTCCAGTTAGTCTTAAACGAACTTTAAATGCTTCAAAAGTTGAAAATTCAACAGGTTTAGTGTAGCTGGTTCGATCTTTTCCAATTGGAGTTTTAAGTTTTTTGAGCAAGAGTGTTATTACGATTATGAACTGAGCATTGATTCGTTCGGTTGATTCGGAACTGAGTATTGATTCAGTGACGGTGTAGAGCTTTTAGTATTTTTCAACTGGTAAGATTTTTTGAATGACATTTCAAAATGTCAAACAAAACAACATTTTCATTTTACATCCACATACAGTAAAACCTCTTATAGAAGCAATGATTATGCACGTTGAACCGAATTATCTCACATGTCAGTTTCTTTGAAAGATATAAAAAATCTGTCAACTGATAAAACATTAGTGATAACATTAGATGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>277 210 165 146 125 26 19 17 15</canonical_bands>
                <polymorphic_bands>277 210 191 146 125 19 17 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACGTTTGTACTTTGAACACAAT</pcr_primer_p1>
		<pcr_primer_p2>GCTACACTAAACCTGTTGAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AACGTTTGTACTTTGAACACAATTTCGAACAATGAGCAAGCTATGAATAAAATTGTCAGCCTTCAATATAAATTCAAATTTTTGGCTTCAAAAGATATTATGGAAAAAATATAGAAAAAATAATGAGAAGAAATATTTGACTTTTCAAAATAAGAAATGGATATATGAAAAGAAAAGTGGTCTGTTTCCAGTTAGTCTTAAACGAACTTTAAATGCTTCAAAAGTTGAAAATTCAACAGGTTTAGTGTAGC</canonical_amplicon>
		<polymorphic_amplicon>AACGTTTGTACTTTGAACACAATTTCGAACAATGAGCAAGCTATGAATAAAATTGTCAGCCTTCAATATAAATTCAAATTTTTGRCTTCAAAAGATATTATGGAAAAAATATAGAAAAAATAATGAGAAGAAATATTTGACTTTTCAAAATAAGAAATGGATATATGAAAAGAAAAGTGGTCTGTTTCCAGTTAGTCTTAAACGAACTTTAAATGCTTCAAAAGTTGAAAATTCAACAGGTTTAGTGTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20581</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1207195</contig_pos>
        <strand>+</strand>
        <context>AAATTCAAAT[G/T]TTTGRCTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAATGAGCAAGCTATGAATAAAATTGTCAGCCTTCAATATAAATTCAAAT</left_flank>
        <right_flank>TTTGGCTTCAAAAGATATTATGGAAAAAATATAGAAAAAATAATGAGAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAATTTGCTCTTTCCTTCCAGAACAAACGTACACCAGTTCCACCAAAAGAGGAAGAGACCAACGAGGACAGTCTTTTTAAGTATCCAGGAGACCTTCGCGCTGTGAAACGCAAGCGGAACCTTCCAATCCAGTGAGTCATCGATTCTGAAAATCAAAATCATTTTTCAAAATCTCAGATCCAACAAGACCTCAAGTGTTGGTGCCAAACGCAAGATGATGGCGCATCAAAAATCAATTCGCGAGGGAGAAGACGCCGAGGGTTCATCAGAGATCAGCAAAGCTGATAACAAGGAGGCCGGAAAAGAGCAAGAGCCGGAAGAGGATGACGAGAAGTGAATCTCTGATTTAAAAATTTTTTGTACACACCGTGTTCCCATTAACCCTATTTTTTGTATAAACAATATAAGAAATTTGTGTAAACGTTTGTACTTTGAACACAATTTCGAACAATGAGCAAGCTATGAATAAAATTGTCAGCCTTCAATATAAATTCAAATTTTTGGCTTCAAAAGATATTATGGAAAAAATATAGAAAAAATAATGAGAAGAAATATTTGACTTTTCAAAATAAGAAATGGATATATGAAAAGAAAAGTGGTCTGTTTCCAGTTAGTCTTAAACGAACTTTAAATGCTTCAAAAGTTGAAAATTCAACAGGTTTAGTGTAGCTGGTTCGATCTTTTCCAATTGGAGTTTTAAGTTTTTTGAGCAAGAGTGTTATTACGATTATGAACTGAGCATTGATTCGTTCGGTTGATTCGGAACTGAGTATTGATTCAGTGACGGTGTAGAGCTTTTAGTATTTTTCAACTGGTAAGATTTTTTGAATGACATTTCAAAATGTCAAACAAAACAACATTTTCATTTTACATCCACATACAGTAAAACCTCTTATAGAAGCAATGATTATGCACGTTGAACCGAATTATCTCACATGTCAGTTTCTTTGAAAGATATAAAAAATCTGTCAACTGATAAAACATTAGTGATAACATTAG</canonical>
            <polymorphic>ACAATTTGCTCTTTCCTTCCAGAACAAACGTACACCAGTTCCACCAAAAGAGGAAGAGACCAACGAGGACAGTCTTTTTAAGTATCCAGGAGACCTTCGCGCTGTGAAACGCAAGCGGAACCTTCCAATCCAGTGAGTCATCGATTCTGAAAATCAAAATCATTTTTCAAAATCTCAGATCCAACAAGACCTCAAGTGTTGGTGCCAAACGCAAGATGATGGCGCATCAAAAATCAATTCGCGAGGGAGAAGACGCCGAGGGTTCATCAGAGATCAGCAAAGCTGATAACAAGGAGGCCGGAAAAGAGCAAGAGCCGGAAGAGGATGACGAGAAGTGAATCTCTGATTTAAAAATTTTTTGTACACACCGTGTTCCCATTAACCCTATTTTTTGTATAAACAATATAAGAAATTTGTGTAAACGTTTGTACTTTGAACACAATTTCGAACAATGAGCAAGCTATGAATAAAATTGTCAGCCTTCAATATAAATTCAAATKTTTGGCTTCAAAAGATATTATGGAAAAAATATAGAAAAAATAATGAGAAGAAATATTTGACTTTTCAAAATAAGAAATGGATATATGAAAAGAAAAGTGGTCTGTTTCCAGTTAGTCTTAAACGAACTTTAAATGCTTCAAAAGTTGAAAATTCAACAGGTTTAGTGTAGCTGGTTCGATCTTTTCCAATTGGAGTTTTAAGTTTTTTGAGCAAGAGTGTTATTACGATTATGAACTGAGCATTGATTCGTTCGGTTGATTCGGAACTGAGTATTGATTCAGTGACGGTGTAGAGCTTTTAGTATTTTTCAACTGGTAAGATTTTTTGAATGACATTTCAAAATGTCAAACAAAACAACATTTTCATTTTACATCCACATACAGTAAAACCTCTTATAGAAGCAATGATTATGCACGTTGAACCGAATTATCTCACATGTCAGTTTCTTTGAAAGATATAAAAAATCTGTCAACTGATAAAACATTAGTGATAACATTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>352 351 153 80 58 6</canonical_bands>
                <polymorphic_bands>352 351 159 80 58</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>238 233 153 117 75 58 38 30 30 20 6 2</canonical_bands>
                <polymorphic_bands>238 233 159 117 75 58 38 30 30 20 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACGTTTGTACTTTGAACACAAT</pcr_primer_p1>
		<pcr_primer_p2>GCTACACTAAACCTGTTGAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AACGTTTGTACTTTGAACACAATTTCGAACAATGAGCAAGCTATGAATAAAATTGTCAGCCTTCAATATAAATTCAAATTTTTGGCTTCAAAAGATATTATGGAAAAAATATAGAAAAAATAATGAGAAGAAATATTTGACTTTTCAAAATAAGAAATGGATATATGAAAAGAAAAGTGGTCTGTTTCCAGTTAGTCTTAAACGAACTTTAAATGCTTCAAAAGTTGAAAATTCAACAGGTTTAGTGTAGC</canonical_amplicon>
		<polymorphic_amplicon>AACGTTTGTACTTTGAACACAATTTCGAACAATGAGCAAGCTATGAATAAAATTGTCAGCCTTCAATATAAATTCAAATKTTTGGCTTCAAAAGATATTATGGAAAAAATATAGAAAAAATAATGAGAAGAAATATTTGACTTTTCAAAATAAGAAATGGATATATGAAAAGAAAAGTGGTCTGTTTCCAGTTAGTCTTAAACGAACTTTAAATGCTTCAAAAGTTGAAAATTCAACAGGTTTAGTGTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20582</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1251551</contig_pos>
        <strand>+</strand>
        <context>ATAATTTTCC[A/G]CTTTTCCTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAGCGAAACCCGTCTATCCCTTCTTTCCTCTGAAATTCATAATTTTCC</left_flank>
        <right_flank>CTTTTCCTGCCCTTTTAACGCATAACTTTTTTCCTTAGCTTAGTCCCGAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGGAGACATGTCTTTACAAGATCTTCGCCGATGCTGTTGAAACCAAAGAAGTCATTTTCTGTGAGTTCTATCATCACCCATTAGCATTGTGAGGTATTTAAAATTCGTTTTCCAGGTCACCAAGACGACCGCTACCACATCAAGAGCTTCAACTTGGAGTTCCGTCGTGATGGAGGCCGTGTTAGTCATCTCAAACGTATCCAACGTCATGCTAACAAGATTGTCACCACCGTCGCATCCGGATGCCAGAAGTTGGTCTCCAGAATCCGTCGTCGTCGTATTCAAAACTAAATGCAACCCTGTTAATAGAAGCCGATCCCCCGTTGTCCGTCGTTCCGAGTTTTCCTGTTCTTCCGAGTTCCCCCAATTCAATTCTTGTAATAACTCTTCTAAATTGTAATTATTTGTAATCCACAAAACTATGCAACCGTCCCACCTCTTCTTCTTTGAAGCGAAACCCGTCTATCCCTTCTTTCCTCTGAAATTCATAATTTTCCACTTTTCCTGCCCTTTTAACGCATAACTTTTTTCCTTAGCTTAGTCCCGAGAAGACATCAGCACATTCCAGTAATTTGGTATGGATAACAATAAAATATTTAGCATCAGCAAAATTTTCATGAAGTGTAATCAATATTGGATACAAAATACCCGAAAATCGAGAATTCAATTAAGACGAAAGAAAAGGAAAAAGTATATGACGAGAGAAAAAGGATCAAATTTGGACGAATAGCACCTATTAACGGTTTTTCTTGACAAGCACACATTCAAAAAGAGATTAAAGCATTTGGATAAGTGAAAAATTGATTTTTGGATATCAGACGAACGCCGGTTCCGGTGCACTTGCACAGCACGACGTGAACTTGCCCTTGTCGCTTTTGATGACCCCATCCACATGGAATGCCGATGAGAATTCCTGAAAAATATTGTTTTGCAATGAGTGATGAAGAAAATTAGCATATAAATTGAGACGAGACTAAACAAACCTCGTTGTCATCCGA</canonical>
            <polymorphic>GAAGGAGACATGTCTTTACAAGATCTTCGCCGATGCTGTTGAAACCAAAGAAGTCATTTTCTGTGAGTTCTATCATCACCCATTAGCATTGTGAGGTATTTAAAATTCGTTTTCCAGGTCACCAAGACGACCGCTACCACATCAAGAGCTTCAACTTGGAGTTCCGTCGTGATGGAGGCCGTGTTAGTCATCTCAAACGTATCCAACGTCATGCTAACAAGATTGTCACCACCGTCGCATCCGGATGCCAGAAGTTGGTCTCCAGAATCCGTCGTCGTCGTATTCAAAACTAAATGCAACCCTGTTAATAGAAGCCGATCCCCCGTTGTCCGTCGTTCCGAGTTTTCCTGTTCTTCCGAGTTCCCCCAATTCAATTCTTGTAATAACTCTTCTAAATTGTAATTATTTGTAATCCACAAAACTATGCAACCGTCCCACCTCTTCTTCTTTGAAGCGAAACCCGTCTATCCCTTCTTTCCTCTGAAATTCATAATTTTCCRCTTTTCCTGCCCTTTTAACGCATAACTTTTTTCCTTAGCTTAGTCCCGAGAAGACATCAGCACATTCCAGTAATTTGGTATGGATAACAATAAAATATTTAGCATCAGCAAAATTTTCATGAAGTGTAATCAATATTGGATACAAAATACCCGAAAATCGAGAATTCAATTAAGACGAAAGAAAAGGAAAAAGTATATGACGAGAGAAAAAGGATCAAATTTGGACGAATAGCACCTATTAACGGTTTTTCTTGACAAGCACACATTCAAAAAGAGATTAAAGCATTTGGATAAGTGAAAAATTGATTTTTGGATATCAGACGAACGCCGGTTCCGGTGCACTTGCACAGCACGACGTGAACTTGCCCTTGTCGCTTTTGATGACCCCATCCACATGGAATGCCGATGAGAATTCCTGAAAAATATTGTTTTGCAATGAGTGATGAAGAAAATTAGCATATAAATTGAGACGAGACTAAACAAACCTCGTTGTCATCCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>185 108 65 64 63 62 58 49 45 42 34 34 32 28 27 21 18 15 13 12 7 6 5 3 2 2</canonical_bands>
                <polymorphic_bands>185 125 108 65 64 58 49 45 42 34 34 32 28 27 21 18 15 13 12 7 6 5 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTGTAATCCACAAAACTATGC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCGGGTATTTTGTATCC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ATTTGTAATCCACAAAACTATGCAACCGTCCCACCTCTTCTTCTTTGAAGCGAAACCCGTCTATCCCTTCTTTCCTCTGAAATTCATAATTTTCCACTTTTCCTGCCCTTTTAACGCATAACTTTTTTCCTTAGCTTAGTCCCGAGAAGACATCAGCACATTCCAGTAATTTGGTATGGATAACAATAAAATATTTAGCATCAGCAAAATTTTCATGAAGTGTAATCAATATTGGATACAAAATACCCGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATTTGTAATCCACAAAACTATGCAACCGTCCCACCTCTTCTTCTTTGAAGCGAAACCCGTCTATCCCTTCTTTCCTCTGAAATTCATAATTTTCCRCTTTTCCTGCCCTTTTAACGCATAACTTTTTTCCTTAGCTTAGTCCCGAGAAGACATCAGCACATTCCAGTAATTTGGTATGGATAACAATAAAATATTTAGCATCAGCAAAATTTTCATGAAGTGTAATCAATATTGGATACAAAATACCCGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20583</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1251599</contig_pos>
        <strand>+</strand>
        <context>GCTTAGTCCC[A/G]AGAAGACATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCACTTTTCCTGCCCTTTTAACGCATAACTTTTTTCCTTAGCTTAGTCCC</left_flank>
        <right_flank>AGAAGACATCAGCACATTCCAGTAATTTGGTATGGATAACAATAAAATAT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAGTCATTTTCTGTGAGTTCTATCATCACCCATTAGCATTGTGAGGTATTTAAAATTCGTTTTCCAGGTCACCAAGACGACCGCTACCACATCAAGAGCTTCAACTTGGAGTTCCGTCGTGATGGAGGCCGTGTTAGTCATCTCAAACGTATCCAACGTCATGCTAACAAGATTGTCACCACCGTCGCATCCGGATGCCAGAAGTTGGTCTCCAGAATCCGTCGTCGTCGTATTCAAAACTAAATGCAACCCTGTTAATAGAAGCCGATCCCCCGTTGTCCGTCGTTCCGAGTTTTCCTGTTCTTCCGAGTTCCCCCAATTCAATTCTTGTAATAACTCTTCTAAATTGTAATTATTTGTAATCCACAAAACTATGCAACCGTCCCACCTCTTCTTCTTTGAAGCGAAACCCGTCTATCCCTTCTTTCCTCTGAAATTCATAATTTTCCACTTTTCCTGCCCTTTTAACGCATAACTTTTTTCCTTAGCTTAGTCCCGAGAAGACATCAGCACATTCCAGTAATTTGGTATGGATAACAATAAAATATTTAGCATCAGCAAAATTTTCATGAAGTGTAATCAATATTGGATACAAAATACCCGAAAATCGAGAATTCAATTAAGACGAAAGAAAAGGAAAAAGTATATGACGAGAGAAAAAGGATCAAATTTGGACGAATAGCACCTATTAACGGTTTTTCTTGACAAGCACACATTCAAAAAGAGATTAAAGCATTTGGATAAGTGAAAAATTGATTTTTGGATATCAGACGAACGCCGGTTCCGGTGCACTTGCACAGCACGACGTGAACTTGCCCTTGTCGCTTTTGATGACCCCATCCACATGGAATGCCGATGAGAATTCCTGAAAAATATTGTTTTGCAATGAGTGATGAAGAAAATTAGCATATAAATTGAGACGAGACTAAACAAACCTCGTTGTCATCCGATTCGTCAGAGTTCAAACTGCTAGCCGTTAGTCGTTCTCTCATTGCAGC</canonical>
            <polymorphic>AGAAGTCATTTTCTGTGAGTTCTATCATCACCCATTAGCATTGTGAGGTATTTAAAATTCGTTTTCCAGGTCACCAAGACGACCGCTACCACATCAAGAGCTTCAACTTGGAGTTCCGTCGTGATGGAGGCCGTGTTAGTCATCTCAAACGTATCCAACGTCATGCTAACAAGATTGTCACCACCGTCGCATCCGGATGCCAGAAGTTGGTCTCCAGAATCCGTCGTCGTCGTATTCAAAACTAAATGCAACCCTGTTAATAGAAGCCGATCCCCCGTTGTCCGTCGTTCCGAGTTTTCCTGTTCTTCCGAGTTCCCCCAATTCAATTCTTGTAATAACTCTTCTAAATTGTAATTATTTGTAATCCACAAAACTATGCAACCGTCCCACCTCTTCTTCTTTGAAGCGAAACCCGTCTATCCCTTCTTTCCTCTGAAATTCATAATTTTCCACTTTTCCTGCCCTTTTAACGCATAACTTTTTTCCTTAGCTTAGTCCCRAGAAGACATCAGCACATTCCAGTAATTTGGTATGGATAACAATAAAATATTTAGCATCAGCAAAATTTTCATGAAGTGTAATCAATATTGGATACAAAATACCCGAAAATCGAGAATTCAATTAAGACGAAAGAAAAGGAAAAAGTATATGACGAGAGAAAAAGGATCAAATTTGGACGAATAGCACCTATTAACGGTTTTTCTTGACAAGCACACATTCAAAAAGAGATTAAAGCATTTGGATAAGTGAAAAATTGATTTTTGGATATCAGACGAACGCCGGTTCCGGTGCACTTGCACAGCACGACGTGAACTTGCCCTTGTCGCTTTTGATGACCCCATCCACATGGAATGCCGATGAGAATTCCTGAAAAATATTGTTTTGCAATGAGTGATGAAGAAAATTAGCATATAAATTGAGACGAGACTAAACAAACCTCGTTGTCATCCGATTCGTCAGAGTTCAAACTGCTAGCCGTTAGTCGTTCTCTCATTGCAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>283 164 133 95 92 73 73 41 25 21</canonical_bands>
                <polymorphic_bands>356 164 133 95 92 73 41 25 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCCCTTCTTTCCTCTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTTCTCTCGTCATATACTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TATCCCTTCTTTCCTCTGAAATTCATAATTTTCCACTTTTCCTGCCCTTTTAACGCATAACTTTTTTCCTTAGCTTAGTCCCGAGAAGACATCAGCACATTCCAGTAATTTGGTATGGATAACAATAAAATATTTAGCATCAGCAAAATTTTCATGAAGTGTAATCAATATTGGATACAAAATACCCGAAAATCGAGAATTCAATTAAGACGAAAGAAAAGGAAAAAGTATATGACGAGAGAAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>TATCCCTTCTTTCCTCTGAAATTCATAATTTTCCACTTTTCCTGCCCTTTTAACGCATAACTTTTTTCCTTAGCTTAGTCCCRAGAAGACATCAGCACATTCCAGTAATTTGGTATGGATAACAATAAAATATTTAGCATCAGCAAAATTTTCATGAAGTGTAATCAATATTGGATACAAAATACCCGAAAATCGAGAATTCAATTAAGACGAAAGAAAAGGAAAAAGTATATGACGAGAGAAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20584</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1251639</contig_pos>
        <strand>+</strand>
        <context>GTATGGATAA[A/C]AATAAAAWAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCTTAGTCCCGAGAAGACATCAGCACATTCCAGTAATTTGGTATGGATAA</left_flank>
        <right_flank>AATAAAATATTTAGCATCAGCAAAATTTTCATGAAGTGTAATCAATATTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTGAGGTATTTAAAATTCGTTTTCCAGGTCACCAAGACGACCGCTACCACATCAAGAGCTTCAACTTGGAGTTCCGTCGTGATGGAGGCCGTGTTAGTCATCTCAAACGTATCCAACGTCATGCTAACAAGATTGTCACCACCGTCGCATCCGGATGCCAGAAGTTGGTCTCCAGAATCCGTCGTCGTCGTATTCAAAACTAAATGCAACCCTGTTAATAGAAGCCGATCCCCCGTTGTCCGTCGTTCCGAGTTTTCCTGTTCTTCCGAGTTCCCCCAATTCAATTCTTGTAATAACTCTTCTAAATTGTAATTATTTGTAATCCACAAAACTATGCAACCGTCCCACCTCTTCTTCTTTGAAGCGAAACCCGTCTATCCCTTCTTTCCTCTGAAATTCATAATTTTCCACTTTTCCTGCCCTTTTAACGCATAACTTTTTTCCTTAGCTTAGTCCCGAGAAGACATCAGCACATTCCAGTAATTTGGTATGGATAACAATAAAATATTTAGCATCAGCAAAATTTTCATGAAGTGTAATCAATATTGGATACAAAATACCCGAAAATCGAGAATTCAATTAAGACGAAAGAAAAGGAAAAAGTATATGACGAGAGAAAAAGGATCAAATTTGGACGAATAGCACCTATTAACGGTTTTTCTTGACAAGCACACATTCAAAAAGAGATTAAAGCATTTGGATAAGTGAAAAATTGATTTTTGGATATCAGACGAACGCCGGTTCCGGTGCACTTGCACAGCACGACGTGAACTTGCCCTTGTCGCTTTTGATGACCCCATCCACATGGAATGCCGATGAGAATTCCTGAAAAATATTGTTTTGCAATGAGTGATGAAGAAAATTAGCATATAAATTGAGACGAGACTAAACAAACCTCGTTGTCATCCGATTCGTCAGAGTTCAAACTGCTAGCCGTTAGTCGTTCTCTCATTGCAGCCGTCAGTGTGTGGAAGGCTTCCTCGCAGTTGATTCCTGAA</canonical>
            <polymorphic>TTGTGAGGTATTTAAAATTCGTTTTCCAGGTCACCAAGACGACCGCTACCACATCAAGAGCTTCAACTTGGAGTTCCGTCGTGATGGAGGCCGTGTTAGTCATCTCAAACGTATCCAACGTCATGCTAACAAGATTGTCACCACCGTCGCATCCGGATGCCAGAAGTTGGTCTCCAGAATCCGTCGTCGTCGTATTCAAAACTAAATGCAACCCTGTTAATAGAAGCCGATCCCCCGTTGTCCGTCGTTCCGAGTTTTCCTGTTCTTCCGAGTTCCCCCAATTCAATTCTTGTAATAACTCTTCTAAATTGTAATTATTTGTAATCCACAAAACTATGCAACCGTCCCACCTCTTCTTCTTTGAAGCGAAACCCGTCTATCCCTTCTTTCCTCTGAAATTCATAATTTTCCACTTTTCCTGCCCTTTTAACGCATAACTTTTTTCCTTAGCTTAGTCCCGAGAAGACATCAGCACATTCCAGTAATTTGGTATGGATAAMAATAAAATATTTAGCATCAGCAAAATTTTCATGAAGTGTAATCAATATTGGATACAAAATACCCGAAAATCGAGAATTCAATTAAGACGAAAGAAAAGGAAAAAGTATATGACGAGAGAAAAAGGATCAAATTTGGACGAATAGCACCTATTAACGGTTTTTCTTGACAAGCACACATTCAAAAAGAGATTAAAGCATTTGGATAAGTGAAAAATTGATTTTTGGATATCAGACGAACGCCGGTTCCGGTGCACTTGCACAGCACGACGTGAACTTGCCCTTGTCGCTTTTGATGACCCCATCCACATGGAATGCCGATGAGAATTCCTGAAAAATATTGTTTTGCAATGAGTGATGAAGAAAATTAGCATATAAATTGAGACGAGACTAAACAAACCTCGTTGTCATCCGATTCGTCAGAGTTCAAACTGCTAGCCGTTAGTCGTTCTCTCATTGCAGCCGTCAGTGTGTGGAAGGCTTCCTCGCAGTTGATTCCTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCTTTTAACGCATAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTGTCAAGAAAAACCGTTAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCCTTTTAACGCATAACTTTTTTCCTTAGCTTAGTCCCGAGAAGACATCAGCACATTCCAGTAATTTGGTATGGATAACAATAAAATATTTAGCATCAGCAAAATTTTCATGAAGTGTAATCAATATTGGATACAAAATACCCGAAAATCGAGAATTCAATTAAGACGAAAGAAAAGGAAAAAGTATATGACGAGAGAAAAAGGATCAAATTTGGACGAATAGCACCTATTAACGGTTTTTCTTGACAAG</canonical_amplicon>
		<polymorphic_amplicon>CCCTTTTAACGCATAACTTTTTTCCTTAGCTTAGTCCCGAGAAGACATCAGCACATTCCAGTAATTTGGTATGGATAAMAATAAAATATTTAGCATCAGCAAAATTTTCATGAAGTGTAATCAATATTGGATACAAAATACCCGAAAATCGAGAATTCAATTAAGACGAAAGAAAAGGAAAAAGTATATGACGAGAGAAAAAGGATCAAATTTGGACGAATAGCACCTATTAACGGTTTTTCTTGACAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20585</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1251647</contig_pos>
        <strand>+</strand>
        <context>AAMAATAAAA[A/T]ATTTAGCATC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCGAGAAGACATCAGCACATTCCAGTAATTTGGTATGGATAACAATAAAA</left_flank>
        <right_flank>ATTTAGCATCAGCAAAATTTTCATGAAGTGTAATCAATATTGGATACAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTAAAATTCGTTTTCCAGGTCACCAAGACGACCGCTACCACATCAAGAGCTTCAACTTGGAGTTCCGTCGTGATGGAGGCCGTGTTAGTCATCTCAAACGTATCCAACGTCATGCTAACAAGATTGTCACCACCGTCGCATCCGGATGCCAGAAGTTGGTCTCCAGAATCCGTCGTCGTCGTATTCAAAACTAAATGCAACCCTGTTAATAGAAGCCGATCCCCCGTTGTCCGTCGTTCCGAGTTTTCCTGTTCTTCCGAGTTCCCCCAATTCAATTCTTGTAATAACTCTTCTAAATTGTAATTATTTGTAATCCACAAAACTATGCAACCGTCCCACCTCTTCTTCTTTGAAGCGAAACCCGTCTATCCCTTCTTTCCTCTGAAATTCATAATTTTCCACTTTTCCTGCCCTTTTAACGCATAACTTTTTTCCTTAGCTTAGTCCCGAGAAGACATCAGCACATTCCAGTAATTTGGTATGGATAACAATAAAATATTTAGCATCAGCAAAATTTTCATGAAGTGTAATCAATATTGGATACAAAATACCCGAAAATCGAGAATTCAATTAAGACGAAAGAAAAGGAAAAAGTATATGACGAGAGAAAAAGGATCAAATTTGGACGAATAGCACCTATTAACGGTTTTTCTTGACAAGCACACATTCAAAAAGAGATTAAAGCATTTGGATAAGTGAAAAATTGATTTTTGGATATCAGACGAACGCCGGTTCCGGTGCACTTGCACAGCACGACGTGAACTTGCCCTTGTCGCTTTTGATGACCCCATCCACATGGAATGCCGATGAGAATTCCTGAAAAATATTGTTTTGCAATGAGTGATGAAGAAAATTAGCATATAAATTGAGACGAGACTAAACAAACCTCGTTGTCATCCGATTCGTCAGAGTTCAAACTGCTAGCCGTTAGTCGTTCTCTCATTGCAGCCGTCAGTGTGTGGAAGGCTTCCTCGCAGTTGATTCCTGAAAATATGGA</canonical>
            <polymorphic>TATTTAAAATTCGTTTTCCAGGTCACCAAGACGACCGCTACCACATCAAGAGCTTCAACTTGGAGTTCCGTCGTGATGGAGGCCGTGTTAGTCATCTCAAACGTATCCAACGTCATGCTAACAAGATTGTCACCACCGTCGCATCCGGATGCCAGAAGTTGGTCTCCAGAATCCGTCGTCGTCGTATTCAAAACTAAATGCAACCCTGTTAATAGAAGCCGATCCCCCGTTGTCCGTCGTTCCGAGTTTTCCTGTTCTTCCGAGTTCCCCCAATTCAATTCTTGTAATAACTCTTCTAAATTGTAATTATTTGTAATCCACAAAACTATGCAACCGTCCCACCTCTTCTTCTTTGAAGCGAAACCCGTCTATCCCTTCTTTCCTCTGAAATTCATAATTTTCCACTTTTCCTGCCCTTTTAACGCATAACTTTTTTCCTTAGCTTAGTCCCGAGAAGACATCAGCACATTCCAGTAATTTGGTATGGATAACAATAAAAWATTTAGCATCAGCAAAATTTTCATGAAGTGTAATCAATATTGGATACAAAATACCCGAAAATCGAGAATTCAATTAAGACGAAAGAAAAGGAAAAAGTATATGACGAGAGAAAAAGGATCAAATTTGGACGAATAGCACCTATTAACGGTTTTTCTTGACAAGCACACATTCAAAAAGAGATTAAAGCATTTGGATAAGTGAAAAATTGATTTTTGGATATCAGACGAACGCCGGTTCCGGTGCACTTGCACAGCACGACGTGAACTTGCCCTTGTCGCTTTTGATGACCCCATCCACATGGAATGCCGATGAGAATTCCTGAAAAATATTGTTTTGCAATGAGTGATGAAGAAAATTAGCATATAAATTGAGACGAGACTAAACAAACCTCGTTGTCATCCGATTCGTCAGAGTTCAAACTGCTAGCCGTTAGTCGTTCTCTCATTGCAGCCGTCAGTGTGTGGAAGGCTTCCTCGCAGTTGATTCCTGAAAATATGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 290 172 38</canonical_bands>
                <polymorphic_bands>538 290 172</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCTTTTAACGCATAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTGTCAAGAAAAACCGTTAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCCTTTTAACGCATAACTTTTTTCCTTAGCTTAGTCCCGAGAAGACATCAGCACATTCCAGTAATTTGGTATGGATAACAATAAAATATTTAGCATCAGCAAAATTTTCATGAAGTGTAATCAATATTGGATACAAAATACCCGAAAATCGAGAATTCAATTAAGACGAAAGAAAAGGAAAAAGTATATGACGAGAGAAAAAGGATCAAATTTGGACGAATAGCACCTATTAACGGTTTTTCTTGACAAG</canonical_amplicon>
		<polymorphic_amplicon>CCCTTTTAACGCATAACTTTTTTCCTTAGCTTAGTCCCGAGAAGACATCAGCACATTCCAGTAATTTGGTATGGATAACAATAAAAWATTTAGCATCAGCAAAATTTTCATGAAGTGTAATCAATATTGGATACAAAATACCCGAAAATCGAGAATTCAATTAAGACGAAAGAAAAGGAAAAAGTATATGACGAGAGAAAAAGGATCAAATTTGGACGAATAGCACCTATTAACGGTTTTTCTTGACAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20586</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1251721</contig_pos>
        <strand>+</strand>
        <context>GAGAATTCAA[A/T]TAAGACGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAAGTGTAATCAATATTGGATACAAAATACCCGAAAATCGAGAATTCAA</left_flank>
        <right_flank>TAAGACGAAAGAAAAGGAAAAAGTATATGACGAGAGAAAAAGGATCAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGGAGGCCGTGTTAGTCATCTCAAACGTATCCAACGTCATGCTAACAAGATTGTCACCACCGTCGCATCCGGATGCCAGAAGTTGGTCTCCAGAATCCGTCGTCGTCGTATTCAAAACTAAATGCAACCCTGTTAATAGAAGCCGATCCCCCGTTGTCCGTCGTTCCGAGTTTTCCTGTTCTTCCGAGTTCCCCCAATTCAATTCTTGTAATAACTCTTCTAAATTGTAATTATTTGTAATCCACAAAACTATGCAACCGTCCCACCTCTTCTTCTTTGAAGCGAAACCCGTCTATCCCTTCTTTCCTCTGAAATTCATAATTTTCCACTTTTCCTGCCCTTTTAACGCATAACTTTTTTCCTTAGCTTAGTCCCGAGAAGACATCAGCACATTCCAGTAATTTGGTATGGATAACAATAAAATATTTAGCATCAGCAAAATTTTCATGAAGTGTAATCAATATTGGATACAAAATACCCGAAAATCGAGAATTCAATTAAGACGAAAGAAAAGGAAAAAGTATATGACGAGAGAAAAAGGATCAAATTTGGACGAATAGCACCTATTAACGGTTTTTCTTGACAAGCACACATTCAAAAAGAGATTAAAGCATTTGGATAAGTGAAAAATTGATTTTTGGATATCAGACGAACGCCGGTTCCGGTGCACTTGCACAGCACGACGTGAACTTGCCCTTGTCGCTTTTGATGACCCCATCCACATGGAATGCCGATGAGAATTCCTGAAAAATATTGTTTTGCAATGAGTGATGAAGAAAATTAGCATATAAATTGAGACGAGACTAAACAAACCTCGTTGTCATCCGATTCGTCAGAGTTCAAACTGCTAGCCGTTAGTCGTTCTCTCATTGCAGCCGTCAGTGTGTGGAAGGCTTCCTCGCAGTTGATTCCTGAAAATATGGAAAAAATAGGAAAATTGTTATTATTGAAAATACTGAGGAAATTTGAAATTTTTTGGATTTCCTCAATTCTTTTCA</canonical>
            <polymorphic>GATGGAGGCCGTGTTAGTCATCTCAAACGTATCCAACGTCATGCTAACAAGATTGTCACCACCGTCGCATCCGGATGCCAGAAGTTGGTCTCCAGAATCCGTCGTCGTCGTATTCAAAACTAAATGCAACCCTGTTAATAGAAGCCGATCCCCCGTTGTCCGTCGTTCCGAGTTTTCCTGTTCTTCCGAGTTCCCCCAATTCAATTCTTGTAATAACTCTTCTAAATTGTAATTATTTGTAATCCACAAAACTATGCAACCGTCCCACCTCTTCTTCTTTGAAGCGAAACCCGTCTATCCCTTCTTTCCTCTGAAATTCATAATTTTCCACTTTTCCTGCCCTTTTAACGCATAACTTTTTTCCTTAGCTTAGTCCCGAGAAGACATCAGCACATTCCAGTAATTTGGTATGGATAACAATAAAATATTTAGCATCAGCAAAATTTTCATGAAGTGTAATCAATATTGGATACAAAATACCCGAAAATCGAGAATTCAAWTAAGACGAAAGAAAAGGAAAAAGTATATGACGAGAGAAAAAGGATCAAATTTGGACGAATAGCACCTATTAACGGTTTTTCTTGACAAGCACACATTCAAAAAGAGATTAAAGCATTTGGATAAGTGAAAAATTGATTTTTGGATATCAGACGAACGCCGGTTCCGGTGCACTTGCACAGCACGACGTGAACTTGCCCTTGTCGCTTTTGATGACCCCATCCACATGGAATGCCGATGAGAATTCCTGAAAAATATTGTTTTGCAATGAGTGATGAAGAAAATTAGCATATAAATTGAGACGAGACTAAACAAACCTCGTTGTCATCCGATTCGTCAGAGTTCAAACTGCTAGCCGTTAGTCGTTCTCTCATTGCAGCCGTCAGTGTGTGGAAGGCTTCCTCGCAGTTGATTCCTGAAAATATGGAAAAAATAGGAAAATTGTTATTATTGAAAATACTGAGGAAATTTGAAATTTTTTGGATTTCCTCAATTCTTTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>392 210 155 135 69 39</canonical_bands>
                <polymorphic_bands>392 224 210 135 39</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>197 145 110 84 83 80 51 50 40 40 27 22 18 12 11 7 7 6 5 5</canonical_bands>
                <polymorphic_bands>197 145 110 84 83 80 55 51 40 40 27 22 18 12 11 7 7 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCTTTTAACGCATAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTGTCAAGAAAAACCGTTAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCCTTTTAACGCATAACTTTTTTCCTTAGCTTAGTCCCGAGAAGACATCAGCACATTCCAGTAATTTGGTATGGATAACAATAAAATATTTAGCATCAGCAAAATTTTCATGAAGTGTAATCAATATTGGATACAAAATACCCGAAAATCGAGAATTCAATTAAGACGAAAGAAAAGGAAAAAGTATATGACGAGAGAAAAAGGATCAAATTTGGACGAATAGCACCTATTAACGGTTTTTCTTGACAAG</canonical_amplicon>
		<polymorphic_amplicon>CCCTTTTAACGCATAACTTTTTTCCTTAGCTTAGTCCCGAGAAGACATCAGCACATTCCAGTAATTTGGTATGGATAACAATAAAATATTTAGCATCAGCAAAATTTTCATGAAGTGTAATCAATATTGGATACAAAATACCCGAAAATCGAGAATTCAAWTAAGACGAAAGAAAAGGAAAAAGTATATGACGAGAGAAAAAGGATCAAATTTGGACGAATAGCACCTATTAACGGTTTTTCTTGACAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20587</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1251821</contig_pos>
        <strand>+</strand>
        <context>CACACATTCA[A/G]AAAGAGATTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGGACGAATAGCACCTATTAACGGTTTTTCTTGACAAGCACACATTCA</left_flank>
        <right_flank>AAAGAGATTAAAGCATTTGGATAAGTGAAAAATTGATTTTTGGATATCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCGTCGTCGTATTCAAAACTAAATGCAACCCTGTTAATAGAAGCCGATCCCCCGTTGTCCGTCGTTCCGAGTTTTCCTGTTCTTCCGAGTTCCCCCAATTCAATTCTTGTAATAACTCTTCTAAATTGTAATTATTTGTAATCCACAAAACTATGCAACCGTCCCACCTCTTCTTCTTTGAAGCGAAACCCGTCTATCCCTTCTTTCCTCTGAAATTCATAATTTTCCACTTTTCCTGCCCTTTTAACGCATAACTTTTTTCCTTAGCTTAGTCCCGAGAAGACATCAGCACATTCCAGTAATTTGGTATGGATAACAATAAAATATTTAGCATCAGCAAAATTTTCATGAAGTGTAATCAATATTGGATACAAAATACCCGAAAATCGAGAATTCAATTAAGACGAAAGAAAAGGAAAAAGTATATGACGAGAGAAAAAGGATCAAATTTGGACGAATAGCACCTATTAACGGTTTTTCTTGACAAGCACACATTCAAAAAGAGATTAAAGCATTTGGATAAGTGAAAAATTGATTTTTGGATATCAGACGAACGCCGGTTCCGGTGCACTTGCACAGCACGACGTGAACTTGCCCTTGTCGCTTTTGATGACCCCATCCACATGGAATGCCGATGAGAATTCCTGAAAAATATTGTTTTGCAATGAGTGATGAAGAAAATTAGCATATAAATTGAGACGAGACTAAACAAACCTCGTTGTCATCCGATTCGTCAGAGTTCAAACTGCTAGCCGTTAGTCGTTCTCTCATTGCAGCCGTCAGTGTGTGGAAGGCTTCCTCGCAGTTGATTCCTGAAAATATGGAAAAAATAGGAAAATTGTTATTATTGAAAATACTGAGGAAATTTGAAATTTTTTGGATTTCCTCAATTCTTTTCACGTGGAGTTAGAAGGTCGAAAAACTAGATTAACACAAAAATTCGGAAGTCTCTCATTGAGGATTTCTTGAAAATGACTTCCGAAAAAAAGAAAAAACTAT</canonical>
            <polymorphic>GTCGTCGTCGTATTCAAAACTAAATGCAACCCTGTTAATAGAAGCCGATCCCCCGTTGTCCGTCGTTCCGAGTTTTCCTGTTCTTCCGAGTTCCCCCAATTCAATTCTTGTAATAACTCTTCTAAATTGTAATTATTTGTAATCCACAAAACTATGCAACCGTCCCACCTCTTCTTCTTTGAAGCGAAACCCGTCTATCCCTTCTTTCCTCTGAAATTCATAATTTTCCACTTTTCCTGCCCTTTTAACGCATAACTTTTTTCCTTAGCTTAGTCCCGAGAAGACATCAGCACATTCCAGTAATTTGGTATGGATAACAATAAAATATTTAGCATCAGCAAAATTTTCATGAAGTGTAATCAATATTGGATACAAAATACCCGAAAATCGAGAATTCAATTAAGACGAAAGAAAAGGAAAAAGTATATGACGAGAGAAAAAGGATCAAATTTGGACGAATAGCACCTATTAACGGTTTTTCTTGACAAGCACACATTCARAAAGAGATTAAAGCATTTGGATAAGTGAAAAATTGATTTTTGGATATCAGACGAACGCCGGTTCCGGTGCACTTGCACAGCACGACGTGAACTTGCCCTTGTCGCTTTTGATGACCCCATCCACATGGAATGCCGATGAGAATTCCTGAAAAATATTGTTTTGCAATGAGTGATGAAGAAAATTAGCATATAAATTGAGACGAGACTAAACAAACCTCGTTGTCATCCGATTCGTCAGAGTTCAAACTGCTAGCCGTTAGTCGTTCTCTCATTGCAGCCGTCAGTGTGTGGAAGGCTTCCTCGCAGTTGATTCCTGAAAATATGGAAAAAATAGGAAAATTGTTATTATTGAAAATACTGAGGAAATTTGAAATTTTTTGGATTTCCTCAATTCTTTTCACGTGGAGTTAGAAGGTCGAAAAACTAGATTAACACAAAAATTCGGAAGTCTCTCATTGAGGATTTCTTGAAAATGACTTCCGAAAAAAAGAAAAAACTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGGAAAAAGTATATGACGAGAG</pcr_primer_p1>
		<pcr_primer_p2>ACAATATTTTTCAGGAATTCTCAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAGGAAAAAGTATATGACGAGAGAAAAAGGATCAAATTTGGACGAATAGCACCTATTAACGGTTTTTCTTGACAAGCACACATTCAAAAAGAGATTAAAGCATTTGGATAAGTGAAAAATTGATTTTTGGATATCAGACGAACGCCGGTTCCGGTGCACTTGCACAGCACGACGTGAACTTGCCCTTGTCGCTTTTGATGACCCCATCCACATGGAATGCCGATGAGAATTCCTGAAAAATATTGT</canonical_amplicon>
		<polymorphic_amplicon>AAAGGAAAAAGTATATGACGAGAGAAAAAGGATCAAATTTGGACGAATAGCACCTATTAACGGTTTTTCTTGACAAGCACACATTCARAAAGAGATTAAAGCATTTGGATAAGTGAAAAATTGATTTTTGGATATCAGACGAACGCCGGTTCCGGTGCACTTGCACAGCACGACGTGAACTTGCCCTTGTCGCTTTTGATGACCCCATCCACATGGAATGCCGATGAGAATTCCTGAAAAATATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20588</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1251982</contig_pos>
        <strand>+</strand>
        <context>AAATATTGTT[C/T]TGCAATGAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGACCCCATCCACATGGAATGCCGATGAGAATTCCTGAAAAATATTGTT</left_flank>
        <right_flank>TGCAATGAGTGATGAAGAAAATTAGCATATAAATTGAGACGAGACTAAAC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCCACCTCTTCTTCTTTGAAGCGAAACCCGTCTATCCCTTCTTTCCTCTGAAATTCATAATTTTCCACTTTTCCTGCCCTTTTAACGCATAACTTTTTTCCTTAGCTTAGTCCCGAGAAGACATCAGCACATTCCAGTAATTTGGTATGGATAACAATAAAATATTTAGCATCAGCAAAATTTTCATGAAGTGTAATCAATATTGGATACAAAATACCCGAAAATCGAGAATTCAATTAAGACGAAAGAAAAGGAAAAAGTATATGACGAGAGAAAAAGGATCAAATTTGGACGAATAGCACCTATTAACGGTTTTTCTTGACAAGCACACATTCAAAAAGAGATTAAAGCATTTGGATAAGTGAAAAATTGATTTTTGGATATCAGACGAACGCCGGTTCCGGTGCACTTGCACAGCACGACGTGAACTTGCCCTTGTCGCTTTTGATGACCCCATCCACATGGAATGCCGATGAGAATTCCTGAAAAATATTGTTTTGCAATGAGTGATGAAGAAAATTAGCATATAAATTGAGACGAGACTAAACAAACCTCGTTGTCATCCGATTCGTCAGAGTTCAAACTGCTAGCCGTTAGTCGTTCTCTCATTGCAGCCGTCAGTGTGTGGAAGGCTTCCTCGCAGTTGATTCCTGAAAATATGGAAAAAATAGGAAAATTGTTATTATTGAAAATACTGAGGAAATTTGAAATTTTTTGGATTTCCTCAATTCTTTTCACGTGGAGTTAGAAGGTCGAAAAACTAGATTAACACAAAAATTCGGAAGTCTCTCATTGAGGATTTCTTGAAAATGACTTCCGAAAAAAAGAAAAAACTATTATTTTCCGTAAAACCTGTATAAGAAGGGTCTGAGCTAATTTTCCTTACATTCAGCCCTTTTGCGAAATGTCATAAATGTGTTAACCGGCAAAATACTTCAGATATAATAATAAAAAATTTACCAGTTGATTGATTTTTGATATATTTAACATGAATCGAG</canonical>
            <polymorphic>GTCCCACCTCTTCTTCTTTGAAGCGAAACCCGTCTATCCCTTCTTTCCTCTGAAATTCATAATTTTCCACTTTTCCTGCCCTTTTAACGCATAACTTTTTTCCTTAGCTTAGTCCCGAGAAGACATCAGCACATTCCAGTAATTTGGTATGGATAACAATAAAATATTTAGCATCAGCAAAATTTTCATGAAGTGTAATCAATATTGGATACAAAATACCCGAAAATCGAGAATTCAATTAAGACGAAAGAAAAGGAAAAAGTATATGACGAGAGAAAAAGGATCAAATTTGGACGAATAGCACCTATTAACGGTTTTTCTTGACAAGCACACATTCAAAAAGAGATTAAAGCATTTGGATAAGTGAAAAATTGATTTTTGGATATCAGACGAACGCCGGTTCCGGTGCACTTGCACAGCACGACGTGAACTTGCCCTTGTCGCTTTTGATGACCCCATCCACATGGAATGCCGATGAGAATTCCTGAAAAATATTGTTYTGCAATGAGTGATGAAGAAAATTAGCATATAAATTGAGACGAGACTAAACAAACCTCGTTGTCATCCGATTCGTCAGAGTTCAAACTGCTAGCCGTTAGTCGTTCTCTCATTGCAGCCGTCAGTGTGTGGAAGGCTTCCTCGCAGTTGATTCCTGAAAATATGGAAAAAATAGGAAAATTGTTATTATTGAAAATACTGAGGAAATTTGAAATTTTTTGGATTTCCTCAATTCTTTTCACGTGGAGTTAGAAGGTCGAAAAACTAGATTAACACAAAAATTCGGAAGTCTCTCATTGAGGATTTCTTGAAAATGACTTCCGAAAAAAAGAAAAAACTATTATTTTCCGTAAAACCTGTATAAGAAGGGTCTGAGCTAATTTTCCTTACATTCAGCCCTTTTGCGAAATGTCATAAATGTGTTAACCGGCAAAATACTTCAGATATAATAATAAAAAATTTACCAGTTGATTGATTTTTGATATATTTAACATGAATCGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAGATTAAAGCATTTGGATA</pcr_primer_p1>
		<pcr_primer_p2>CAGTTTGAACTCTGACGAATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAGAGATTAAAGCATTTGGATAAGTGAAAAATTGATTTTTGGATATCAGACGAACGCCGGTTCCGGTGCACTTGCACAGCACGACGTGAACTTGCCCTTGTCGCTTTTGATGACCCCATCCACATGGAATGCCGATGAGAATTCCTGAAAAATATTGTTTTGCAATGAGTGATGAAGAAAATTAGCATATAAATTGAGACGAGACTAAACAAACCTCGTTGTCATCCGATTCGTCAGAGTTCAAACTG</canonical_amplicon>
		<polymorphic_amplicon>AAAGAGATTAAAGCATTTGGATAAGTGAAAAATTGATTTTTGGATATCAGACGAACGCCGGTTCCGGTGCACTTGCACAGCACGACGTGAACTTGCCCTTGTCGCTTTTGATGACCCCATCCACATGGAATGCCGATGAGAATTCCTGAAAAATATTGTTYTGCAATGAGTGATGAAGAAAATTAGCATATAAATTGAGACGAGACTAAACAAACCTCGTTGTCATCCGATTCGTCAGAGTTCAAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20589</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1251995</contig_pos>
        <strand>+</strand>
        <context>CAATGAGTGA[C/T]RAAGAAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATGGAATGCCGATGAGAATTCCTGAAAAATATTGTTTTGCAATGAGTGA</left_flank>
        <right_flank>GAAGAAAATTAGCATATAAATTGAGACGAGACTAAACAAACCTCGTTGTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTTGAAGCGAAACCCGTCTATCCCTTCTTTCCTCTGAAATTCATAATTTTCCACTTTTCCTGCCCTTTTAACGCATAACTTTTTTCCTTAGCTTAGTCCCGAGAAGACATCAGCACATTCCAGTAATTTGGTATGGATAACAATAAAATATTTAGCATCAGCAAAATTTTCATGAAGTGTAATCAATATTGGATACAAAATACCCGAAAATCGAGAATTCAATTAAGACGAAAGAAAAGGAAAAAGTATATGACGAGAGAAAAAGGATCAAATTTGGACGAATAGCACCTATTAACGGTTTTTCTTGACAAGCACACATTCAAAAAGAGATTAAAGCATTTGGATAAGTGAAAAATTGATTTTTGGATATCAGACGAACGCCGGTTCCGGTGCACTTGCACAGCACGACGTGAACTTGCCCTTGTCGCTTTTGATGACCCCATCCACATGGAATGCCGATGAGAATTCCTGAAAAATATTGTTTTGCAATGAGTGATGAAGAAAATTAGCATATAAATTGAGACGAGACTAAACAAACCTCGTTGTCATCCGATTCGTCAGAGTTCAAACTGCTAGCCGTTAGTCGTTCTCTCATTGCAGCCGTCAGTGTGTGGAAGGCTTCCTCGCAGTTGATTCCTGAAAATATGGAAAAAATAGGAAAATTGTTATTATTGAAAATACTGAGGAAATTTGAAATTTTTTGGATTTCCTCAATTCTTTTCACGTGGAGTTAGAAGGTCGAAAAACTAGATTAACACAAAAATTCGGAAGTCTCTCATTGAGGATTTCTTGAAAATGACTTCCGAAAAAAAGAAAAAACTATTATTTTCCGTAAAACCTGTATAAGAAGGGTCTGAGCTAATTTTCCTTACATTCAGCCCTTTTGCGAAATGTCATAAATGTGTTAACCGGCAAAATACTTCAGATATAATAATAAAAAATTTACCAGTTGATTGATTTTTGATATATTTAACATGAATCGAGATGATTGAGCCCG</canonical>
            <polymorphic>TTCTTTGAAGCGAAACCCGTCTATCCCTTCTTTCCTCTGAAATTCATAATTTTCCACTTTTCCTGCCCTTTTAACGCATAACTTTTTTCCTTAGCTTAGTCCCGAGAAGACATCAGCACATTCCAGTAATTTGGTATGGATAACAATAAAATATTTAGCATCAGCAAAATTTTCATGAAGTGTAATCAATATTGGATACAAAATACCCGAAAATCGAGAATTCAATTAAGACGAAAGAAAAGGAAAAAGTATATGACGAGAGAAAAAGGATCAAATTTGGACGAATAGCACCTATTAACGGTTTTTCTTGACAAGCACACATTCAAAAAGAGATTAAAGCATTTGGATAAGTGAAAAATTGATTTTTGGATATCAGACGAACGCCGGTTCCGGTGCACTTGCACAGCACGACGTGAACTTGCCCTTGTCGCTTTTGATGACCCCATCCACATGGAATGCCGATGAGAATTCCTGAAAAATATTGTTTTGCAATGAGTGAYGAAGAAAATTAGCATATAAATTGAGACGAGACTAAACAAACCTCGTTGTCATCCGATTCGTCAGAGTTCAAACTGCTAGCCGTTAGTCGTTCTCTCATTGCAGCCGTCAGTGTGTGGAAGGCTTCCTCGCAGTTGATTCCTGAAAATATGGAAAAAATAGGAAAATTGTTATTATTGAAAATACTGAGGAAATTTGAAATTTTTTGGATTTCCTCAATTCTTTTCACGTGGAGTTAGAAGGTCGAAAAACTAGATTAACACAAAAATTCGGAAGTCTCTCATTGAGGATTTCTTGAAAATGACTTCCGAAAAAAAGAAAAAACTATTATTTTCCGTAAAACCTGTATAAGAAGGGTCTGAGCTAATTTTCCTTACATTCAGCCCTTTTGCGAAATGTCATAAATGTGTTAACCGGCAAAATACTTCAGATATAATAATAAAAAATTTACCAGTTGATTGATTTTTGATATATTTAACATGAATCGAGATGATTGAGCCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAGATTAAAGCATTTGGATA</pcr_primer_p1>
		<pcr_primer_p2>CAGTTTGAACTCTGACGAATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAGAGATTAAAGCATTTGGATAAGTGAAAAATTGATTTTTGGATATCAGACGAACGCCGGTTCCGGTGCACTTGCACAGCACGACGTGAACTTGCCCTTGTCGCTTTTGATGACCCCATCCACATGGAATGCCGATGAGAATTCCTGAAAAATATTGTTTTGCAATGAGTGATGAAGAAAATTAGCATATAAATTGAGACGAGACTAAACAAACCTCGTTGTCATCCGATTCGTCAGAGTTCAAACTG</canonical_amplicon>
		<polymorphic_amplicon>AAAGAGATTAAAGCATTTGGATAAGTGAAAAATTGATTTTTGGATATCAGACGAACGCCGGTTCCGGTGCACTTGCACAGCACGACGTGAACTTGCCCTTGTCGCTTTTGATGACCCCATCCACATGGAATGCCGATGAGAATTCCTGAAAAATATTGTTTTGCAATGAGTGAYGAAGAAAATTAGCATATAAATTGAGACGAGACTAAACAAACCTCGTTGTCATCCGATTCGTCAGAGTTCAAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20590</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1251996</contig_pos>
        <strand>+</strand>
        <context>AATGAGTGAY[A/G]AAGAAAATTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGGAATGCCGATGAGAATTCCTGAAAAATATTGTTTTGCAATGAGTGAT</left_flank>
        <right_flank>AAGAAAATTAGCATATAAATTGAGACGAGACTAAACAAACCTCGTTGTCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTTGAAGCGAAACCCGTCTATCCCTTCTTTCCTCTGAAATTCATAATTTTCCACTTTTCCTGCCCTTTTAACGCATAACTTTTTTCCTTAGCTTAGTCCCGAGAAGACATCAGCACATTCCAGTAATTTGGTATGGATAACAATAAAATATTTAGCATCAGCAAAATTTTCATGAAGTGTAATCAATATTGGATACAAAATACCCGAAAATCGAGAATTCAATTAAGACGAAAGAAAAGGAAAAAGTATATGACGAGAGAAAAAGGATCAAATTTGGACGAATAGCACCTATTAACGGTTTTTCTTGACAAGCACACATTCAAAAAGAGATTAAAGCATTTGGATAAGTGAAAAATTGATTTTTGGATATCAGACGAACGCCGGTTCCGGTGCACTTGCACAGCACGACGTGAACTTGCCCTTGTCGCTTTTGATGACCCCATCCACATGGAATGCCGATGAGAATTCCTGAAAAATATTGTTTTGCAATGAGTGATGAAGAAAATTAGCATATAAATTGAGACGAGACTAAACAAACCTCGTTGTCATCCGATTCGTCAGAGTTCAAACTGCTAGCCGTTAGTCGTTCTCTCATTGCAGCCGTCAGTGTGTGGAAGGCTTCCTCGCAGTTGATTCCTGAAAATATGGAAAAAATAGGAAAATTGTTATTATTGAAAATACTGAGGAAATTTGAAATTTTTTGGATTTCCTCAATTCTTTTCACGTGGAGTTAGAAGGTCGAAAAACTAGATTAACACAAAAATTCGGAAGTCTCTCATTGAGGATTTCTTGAAAATGACTTCCGAAAAAAAGAAAAAACTATTATTTTCCGTAAAACCTGTATAAGAAGGGTCTGAGCTAATTTTCCTTACATTCAGCCCTTTTGCGAAATGTCATAAATGTGTTAACCGGCAAAATACTTCAGATATAATAATAAAAAATTTACCAGTTGATTGATTTTTGATATATTTAACATGAATCGAGATGATTGAGCCCGA</canonical>
            <polymorphic>TCTTTGAAGCGAAACCCGTCTATCCCTTCTTTCCTCTGAAATTCATAATTTTCCACTTTTCCTGCCCTTTTAACGCATAACTTTTTTCCTTAGCTTAGTCCCGAGAAGACATCAGCACATTCCAGTAATTTGGTATGGATAACAATAAAATATTTAGCATCAGCAAAATTTTCATGAAGTGTAATCAATATTGGATACAAAATACCCGAAAATCGAGAATTCAATTAAGACGAAAGAAAAGGAAAAAGTATATGACGAGAGAAAAAGGATCAAATTTGGACGAATAGCACCTATTAACGGTTTTTCTTGACAAGCACACATTCAAAAAGAGATTAAAGCATTTGGATAAGTGAAAAATTGATTTTTGGATATCAGACGAACGCCGGTTCCGGTGCACTTGCACAGCACGACGTGAACTTGCCCTTGTCGCTTTTGATGACCCCATCCACATGGAATGCCGATGAGAATTCCTGAAAAATATTGTTTTGCAATGAGTGATRAAGAAAATTAGCATATAAATTGAGACGAGACTAAACAAACCTCGTTGTCATCCGATTCGTCAGAGTTCAAACTGCTAGCCGTTAGTCGTTCTCTCATTGCAGCCGTCAGTGTGTGGAAGGCTTCCTCGCAGTTGATTCCTGAAAATATGGAAAAAATAGGAAAATTGTTATTATTGAAAATACTGAGGAAATTTGAAATTTTTTGGATTTCCTCAATTCTTTTCACGTGGAGTTAGAAGGTCGAAAAACTAGATTAACACAAAAATTCGGAAGTCTCTCATTGAGGATTTCTTGAAAATGACTTCCGAAAAAAAGAAAAAACTATTATTTTCCGTAAAACCTGTATAAGAAGGGTCTGAGCTAATTTTCCTTACATTCAGCCCTTTTGCGAAATGTCATAAATGTGTTAACCGGCAAAATACTTCAGATATAATAATAAAAAATTTACCAGTTGATTGATTTTTGATATATTTAACATGAATCGAGATGATTGAGCCCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAGATTAAAGCATTTGGATA</pcr_primer_p1>
		<pcr_primer_p2>CAGTTTGAACTCTGACGAATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAGAGATTAAAGCATTTGGATAAGTGAAAAATTGATTTTTGGATATCAGACGAACGCCGGTTCCGGTGCACTTGCACAGCACGACGTGAACTTGCCCTTGTCGCTTTTGATGACCCCATCCACATGGAATGCCGATGAGAATTCCTGAAAAATATTGTTTTGCAATGAGTGATGAAGAAAATTAGCATATAAATTGAGACGAGACTAAACAAACCTCGTTGTCATCCGATTCGTCAGAGTTCAAACTG</canonical_amplicon>
		<polymorphic_amplicon>AAAGAGATTAAAGCATTTGGATAAGTGAAAAATTGATTTTTGGATATCAGACGAACGCCGGTTCCGGTGCACTTGCACAGCACGACGTGAACTTGCCCTTGTCGCTTTTGATGACCCCATCCACATGGAATGCCGATGAGAATTCCTGAAAAATATTGTTTTGCAATGAGTGATRAAGAAAATTAGCATATAAATTGAGACGAGACTAAACAAACCTCGTTGTCATCCGATTCGTCAGAGTTCAAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20591</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1253672</contig_pos>
        <strand>+</strand>
        <context>AAAAAGTGCA[C/T]CAAAGAGCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAGTGCCCCCCGTTCCAAATGCCTCTTCAGAAAATTCCCAAAAAGTGCA</left_flank>
        <right_flank>CAAAGAGCTCTGGGAGGCTCGAAAAAGGCTCGAAAAACAAATTGAGTAGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCCTCACCCGTTTTCGCCGACACTTCGTATAGTGAAACGCCCAATCGTGAAGCCAGTCTTTCAGCGCGATCGAAGTCAACCTGAAAATGCATAAGTAGTCATGTTTTTCATTCATCTCATTCACTATTACGATTCCGCCACACCGCACTCCATTAATGGAGTGTTGTATGCAGGAATCCGATAATTACAACAGCGCATAATAGTTACGATTAAGGATGTTTTTCCCCTGTCTTCGTTTCTTCATGTGTTGGGCCCTGCCTTCGATATTCCTTAGTGTTACAAATGTAACTCAATCAAATTGTTTGGACACATCCCTCATCCCTCATACACACACACACACACACACAATTCGTCAGTCAATATATAAAATGTGTGTGTAACATTGCTTTTGCACAATTCCGATTCACAACTTATGAAGAGAAGGTTTTCATTGTAATATTGTGTTGAAGAGTGCCCCCCGTTCCAAATGCCTCTTCAGAAAATTCCCAAAAAGTGCATCAAAGAGCTCTGGGAGGCTCGAAAAAGGCTCGAAAAACAAATTGAGTAGTAGTTCCCCCCTTCTATTCCCGCTCCGGACACTGGAACAAGATGGATGGTGGTCGAACGGCCTAATTGGTTGCACGAAACAAAAAAGAGGCAATGGATTCGGAGCTGCGCCGAGAGTCATAAAATTGATAGATTATGTCCGACAAATTTGCGCATTCGGGGGCTCGAGGTTTCAGTTTCTAGATTTAGAATTCACAGGCCTTGCCTGAACACTAAACCAATACTGGCCCCGGACTTTAGGGCCCTTTTAAAACATCTTTGCTCCCTCCCAACCTGTACTATGTTTGTTCTGATACAACATTGCTGCTTTATGCGTACATTAATGTATATATACATAGATGAAATTGGTTTGTTGGCTAGGAGGGAAGACACAAAAGCACCTTTGAAGAGGGGGACGGTCGACCTCTGTCTAATTCGGGCTAATAGGATAGTGGAAGAAGTGGGAAGACGAC</canonical>
            <polymorphic>AACCCTCACCCGTTTTCGCCGACACTTCGTATAGTGAAACGCCCAATCGTGAAGCCAGTCTTTCAGCGCGATCGAAGTCAACCTGAAAATGCATAAGTAGTCATGTTTTTCATTCATCTCATTCACTATTACGATTCCGCCACACCGCACTCCATTAATGGAGTGTTGTATGCAGGAATCCGATAATTACAACAGCGCATAATAGTTACGATTAAGGATGTTTTTCCCCTGTCTTCGTTTCTTCATGTGTTGGGCCCTGCCTTCGATATTCCTTAGTGTTACAAATGTAACTCAATCAAATTGTTTGGACACATCCCTCATCCCTCATACACACACACACACACACACAATTCGTCAGTCAATATATAAAATGTGTGTGTAACATTGCTTTTGCACAATTCCGATTCACAACTTATGAAGAGAAGGTTTTCATTGTAATATTGTGTTGAAGAGTGCCCCCCGTTCCAAATGCCTCTTCAGAAAATTCCCAAAAAGTGCAYCAAAGAGCTCTGGGAGGCTCGAAAAAGGCTCGAAAAACAAATTGAGTAGTAGTTCCCCCCTTCTATTCCCGCTCCGGACACTGGAACAAGATGGATGGTGGTCGAACGGCCTAATTGGTTGCACGAAACAAAAAAGAGGCAATGGATTCGGAGCTGCGCCGAGAGTCATAAAATTGATAGATTATGTCCGACAAATTTGCGCATTCGGGGGCTCGAGGTTTCAGTTTCTAGATTTAGAATTCACAGGCCTTGCCTGAACACTAAACCAATACTGGCCCCGGACTTTAGGGCCCTTTTAAAACATCTTTGCTCCCTCCCAACCTGTACTATGTTTGTTCTGATACAACATTGCTGCTTTATGCGTACATTAATGTATATATACATAGATGAAATTGGTTTGTTGGCTAGGAGGGAAGACACAAAAGCACCTTTGAAGAGGGGGACGGTCGACCTCTGTCTAATTCGGGCTAATAGGATAGTGGAAGAAGTGGGAAGACGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAATATTGTGTTGAAGAGTGC</pcr_primer_p1>
		<pcr_primer_p2>TGTCGGACATAATCTATCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>TGTAATATTGTGTTGAAGAGTGCCCCCCGTTCCAAATGCCTCTTCAGAAAATTCCCAAAAAGTGCATCAAAGAGCTCTGGGAGGCTCGAAAAAGGCTCGAAAAACAAATTGAGTAGTAGTTCCCCCCTTCTATTCCCGCTCCGGACACTGGAACAAGATGGATGGTGGTCGAACGGCCTAATTGGTTGCACGAAACAAAAAAGAGGCAATGGATTCGGAGCTGCGCCGAGAGTCATAAAATTGATAGATTATGTCCGACA</canonical_amplicon>
		<polymorphic_amplicon>TGTAATATTGTGTTGAAGAGTGCCCCCCGTTCCAAATGCCTCTTCAGAAAATTCCCAAAAAGTGCAYCAAAGAGCTCTGGGAGGCTCGAAAAAGGCTCGAAAAACAAATTGAGTAGTAGTTCCCCCCTTCTATTCCCGCTCCGGACACTGGAACAAGATGGATGGTGGTCGAACGGCCTAATTGGTTGCACGAAACAAAAAAGAGGCAATGGATTCGGAGCTGCGCCGAGAGTCATAAAATTGATAGATTATGTCCGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20610</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1254752</contig_pos>
        <strand>+</strand>
        <context>ACACACAAAG[A/G]GTAAAGCAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATTTGCCAAAGATTGGAACAGGAGAGGAAATCCTACATACACACAAAG</left_flank>
        <right_flank>GTAAAGCAAACAAAAAAGGTTACCTTATCCCGTCCCAGTTTGATAGTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGTTCTACAGATGGTGGATGAATAATAATCGAATTTATGACCGTCAGGTGTAGACAGCTAAGCTCACCTTTCGCTCTTGATCCAAATCTGCCTTGTTGCCTACCAACATGAGTACGGCGTTTGCTGGAGCGTGCTGCTTAATTTCTTTCAGCCAATACTTTTCCATATTCTCGAACGACTTCTCATTCGTCATATCGTACACACACATTACTCCATGCGCCGAGTGGTAGTACGAGTTGTATATCGTTCGGTATCGCTCCATTCCAGCGGTATCCCACAGTTCTAATCGGATCTGCAATCAATTCGAAAATAATTGCTGACCAGAAAGATGGTTATCAGTGTGATTCATTTGTGTGGGAGTTTCTGATAAGAGACACCAAAAAATAGAGTGTTCAAAACTCCAAATTAAAAATCAATGTCTATTTTCTCAAAACGATATTTTTTCGATATTTGCCAAAGATTGGAACAGGAGAGGAAATCCTACATACACACAAAGGGTAAAGCAAACAAAAAAGGTTACCTTATCCCGTCCCAGTTTGATAGTTTTCAATTTGAAATCCACGCCTAGTGTACTAATGTGATCCATTCTGAAGTTGTTCTCGGCGAACCTCAGAAGAATGCATGATTTGCCGCAATTGTGATCCCCAACGACAACTATCTGTAATTGATTGGAATTGGTTGGACTAGGTTTGATTGATTAGAAGTCATTTTCTAGATTATTCCCTCACTGATCAAGTTTCAAGGTACCAAACTTGTACCAAACTTGGAAAATAGACTTCTTTCTCCTTAAAAACATATGCCCCTTGGGACAACTCGTTCCTAACTCCTAGCATAATTTGTTCATATATTTTCTACACCAGCAAACACACCAGCCGTCCATAAATTGTTTTCACTACTGTGTCTAAATCAGTTATGCGTGCCCGTGAAGGACCCCGTCTACCCCACAATCATCATTTTGTCCAAAGGTATTATACAAAATGATTATGAGGCATGAAAT</canonical>
            <polymorphic>TTTTGTTCTACAGATGGTGGATGAATAATAATCGAATTTATGACCGTCAGGTGTAGACAGCTAAGCTCACCTTTCGCTCTTGATCCAAATCTGCCTTGTTGCCTACCAACATGAGTACGGCGTTTGCTGGAGCGTGCTGCTTAATTTCTTTCAGCCAATACTTTTCCATATTCTCGAACGACTTCTCATTCGTCATATCGTACACACACATTACTCCATGCGCCGAGTGGTAGTACGAGTTGTATATCGTTCGGTATCGCTCCATTCCAGCGGTATCCCACAGTTCTAATCGGATCTGCAATCAATTCGAAAATAATTGCTGACCAGAAAGATGGTTATCAGTGTGATTCATTTGTGTGGGAGTTTCTGATAAGAGACACCAAAAAATAGAGTGTTCAAAACTCCAAATTAAAAATCAATGTCTATTTTCTCAAAACGATATTTTTTCGATATTTGCCAAAGATTGGAACAGGAGAGGAAATCCTACATACACACAAAGRGTAAAGCAAACAAAAAAGGTTACCTTATCCCGTCCCAGTTTGATAGTTTTCAATTTGAAATCCACGCCTAGTGTACTAATGTGATCCATTCTGAAGTTGTTCTCGGCGAACCTCAGAAGAATGCATGATTTGCCGCAATTGTGATCCCCAACGACAACTATCTGTAATTGATTGGAATTGGTTGGACTAGGTTTGATTGATTAGAAGTCATTTTCTAGATTATTCCCTCACTGATCAAGTTTCAAGGTACCAAACTTGTACCAAACTTGGAAAATAGACTTCTTTCTCCTTAAAAACATATGCCCCTTGGGACAACTCGTTCCTAACTCCTAGCATAATTTGTTCATATATTTTCTACACCAGCAAACACACCAGCCGTCCATAAATTGTTTTCACTACTGTGTCTAAATCAGTTATGCGTGCCCGTGAAGGACCCCGTCTACCCCACAATCATCATTTTGTCCAAAGGTATTATACAAAATGATTATGAGGCATGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGGTTATCAGTGTGATTCATT</pcr_primer_p1>
		<pcr_primer_p2>ATTAGTACACTAGGCGTGGATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATGGTTATCAGTGTGATTCATTTGTGTGGGAGTTTCTGATAAGAGACACCAAAAAATAGAGTGTTCAAAACTCCAAATTAAAAATCAATGTCTATTTTCTCAAAACGATATTTTTTCGATATTTGCCAAAGATTGGAACAGGAGAGGAAATCCTACATACACACAAAGGGTAAAGCAAACAAAAAAGGTTACCTTATCCCGTCCCAGTTTGATAGTTTTCAATTTGAAATCCACGCCTAGTGTACTAAT</canonical_amplicon>
		<polymorphic_amplicon>GATGGTTATCAGTGTGATTCATTTGTGTGGGAGTTTCTGATAAGAGACACCAAAAAATAGAGTGTTCAAAACTCCAAATTAAAAATCAATGTCTATTTTCTCAAAACGATATTTTTTCGATATTTGCCAAAGATTGGAACAGGAGAGGAAATCCTACATACACACAAAGRGTAAAGCAAACAAAAAAGGTTACCTTATCCCGTCCCAGTTTGATAGTTTTCAATTTGAAATCCACGCCTAGTGTACTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20611</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1254868</contig_pos>
        <strand>+</strand>
        <context>GCGAACCTCA[A/G]AAGAATGCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCTAGTGTACTAATGTGATCCATTCTGAAGTTGTTCTCGGCGAACCTCA</left_flank>
        <right_flank>AAGAATGCATGATTTGCCGCAATTGTGATCCCCAACGACAACTATCTGTA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGGCGTTTGCTGGAGCGTGCTGCTTAATTTCTTTCAGCCAATACTTTTCCATATTCTCGAACGACTTCTCATTCGTCATATCGTACACACACATTACTCCATGCGCCGAGTGGTAGTACGAGTTGTATATCGTTCGGTATCGCTCCATTCCAGCGGTATCCCACAGTTCTAATCGGATCTGCAATCAATTCGAAAATAATTGCTGACCAGAAAGATGGTTATCAGTGTGATTCATTTGTGTGGGAGTTTCTGATAAGAGACACCAAAAAATAGAGTGTTCAAAACTCCAAATTAAAAATCAATGTCTATTTTCTCAAAACGATATTTTTTCGATATTTGCCAAAGATTGGAACAGGAGAGGAAATCCTACATACACACAAAGGGTAAAGCAAACAAAAAAGGTTACCTTATCCCGTCCCAGTTTGATAGTTTTCAATTTGAAATCCACGCCTAGTGTACTAATGTGATCCATTCTGAAGTTGTTCTCGGCGAACCTCAGAAGAATGCATGATTTGCCGCAATTGTGATCCCCAACGACAACTATCTGTAATTGATTGGAATTGGTTGGACTAGGTTTGATTGATTAGAAGTCATTTTCTAGATTATTCCCTCACTGATCAAGTTTCAAGGTACCAAACTTGTACCAAACTTGGAAAATAGACTTCTTTCTCCTTAAAAACATATGCCCCTTGGGACAACTCGTTCCTAACTCCTAGCATAATTTGTTCATATATTTTCTACACCAGCAAACACACCAGCCGTCCATAAATTGTTTTCACTACTGTGTCTAAATCAGTTATGCGTGCCCGTGAAGGACCCCGTCTACCCCACAATCATCATTTTGTCCAAAGGTATTATACAAAATGATTATGAGGCATGAAATCATAAAATTCGGGTAGTTGGGAGGTGACTGGTATGCAGTAAGTTATACAAAAACTTGTTTTTCGTATGATTTTAGGATATTTAAATCCATTTTCAGGAGTCTGAAGCTCGGTAGTC</canonical>
            <polymorphic>ACGGCGTTTGCTGGAGCGTGCTGCTTAATTTCTTTCAGCCAATACTTTTCCATATTCTCGAACGACTTCTCATTCGTCATATCGTACACACACATTACTCCATGCGCCGAGTGGTAGTACGAGTTGTATATCGTTCGGTATCGCTCCATTCCAGCGGTATCCCACAGTTCTAATCGGATCTGCAATCAATTCGAAAATAATTGCTGACCAGAAAGATGGTTATCAGTGTGATTCATTTGTGTGGGAGTTTCTGATAAGAGACACCAAAAAATAGAGTGTTCAAAACTCCAAATTAAAAATCAATGTCTATTTTCTCAAAACGATATTTTTTCGATATTTGCCAAAGATTGGAACAGGAGAGGAAATCCTACATACACACAAAGGGTAAAGCAAACAAAAAAGGTTACCTTATCCCGTCCCAGTTTGATAGTTTTCAATTTGAAATCCACGCCTAGTGTACTAATGTGATCCATTCTGAAGTTGTTCTCGGCGAACCTCARAAGAATGCATGATTTGCCGCAATTGTGATCCCCAACGACAACTATCTGTAATTGATTGGAATTGGTTGGACTAGGTTTGATTGATTAGAAGTCATTTTCTAGATTATTCCCTCACTGATCAAGTTTCAAGGTACCAAACTTGTACCAAACTTGGAAAATAGACTTCTTTCTCCTTAAAAACATATGCCCCTTGGGACAACTCGTTCCTAACTCCTAGCATAATTTGTTCATATATTTTCTACACCAGCAAACACACCAGCCGTCCATAAATTGTTTTCACTACTGTGTCTAAATCAGTTATGCGTGCCCGTGAAGGACCCCGTCTACCCCACAATCATCATTTTGTCCAAAGGTATTATACAAAATGATTATGAGGCATGAAATCATAAAATTCGGGTAGTTGGGAGGTGACTGGTATGCAGTAAGTTATACAAAAACTTGTTTTTCGTATGATTTTAGGATATTTAAATCCATTTTCAGGAGTCTGAAGCTCGGTAGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>487 224 176 76 23 14</canonical_bands>
                <polymorphic_bands>510 224 176 76 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCCACGCCTAGTGTACTAAT</pcr_primer_p1>
		<pcr_primer_p2>GCATATGTTTTTAAGGAGAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAATCCACGCCTAGTGTACTAATGTGATCCATTCTGAAGTTGTTCTCGGCGAACCTCAGAAGAATGCATGATTTGCCGCAATTGTGATCCCCAACGACAACTATCTGTAATTGATTGGAATTGGTTGGACTAGGTTTGATTGATTAGAAGTCATTTTCTAGATTATTCCCTCACTGATCAAGTTTCAAGGTACCAAACTTGTACCAAACTTGGAAAATAGACTTCTTTCTCCTTAAAAACATATGC</canonical_amplicon>
		<polymorphic_amplicon>AAATCCACGCCTAGTGTACTAATGTGATCCATTCTGAAGTTGTTCTCGGCGAACCTCARAAGAATGCATGATTTGCCGCAATTGTGATCCCCAACGACAACTATCTGTAATTGATTGGAATTGGTTGGACTAGGTTTGATTGATTAGAAGTCATTTTCTAGATTATTCCCTCACTGATCAAGTTTCAAGGTACCAAACTTGTACCAAACTTGGAAAATAGACTTCTTTCTCCTTAAAAACATATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20612</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1254917</contig_pos>
        <strand>+</strand>
        <context>CAACTATCTG[C/T]AATTGATTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAGAATGCATGATTTGCCGCAATTGTGATCCCCAACGACAACTATCTG</left_flank>
        <right_flank>AATTGATTGGAATTGGTTGGACTAGGTTTGATTGATTAGAAGTCATTTTC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATATTCTCGAACGACTTCTCATTCGTCATATCGTACACACACATTACTCCATGCGCCGAGTGGTAGTACGAGTTGTATATCGTTCGGTATCGCTCCATTCCAGCGGTATCCCACAGTTCTAATCGGATCTGCAATCAATTCGAAAATAATTGCTGACCAGAAAGATGGTTATCAGTGTGATTCATTTGTGTGGGAGTTTCTGATAAGAGACACCAAAAAATAGAGTGTTCAAAACTCCAAATTAAAAATCAATGTCTATTTTCTCAAAACGATATTTTTTCGATATTTGCCAAAGATTGGAACAGGAGAGGAAATCCTACATACACACAAAGGGTAAAGCAAACAAAAAAGGTTACCTTATCCCGTCCCAGTTTGATAGTTTTCAATTTGAAATCCACGCCTAGTGTACTAATGTGATCCATTCTGAAGTTGTTCTCGGCGAACCTCAGAAGAATGCATGATTTGCCGCAATTGTGATCCCCAACGACAACTATCTGTAATTGATTGGAATTGGTTGGACTAGGTTTGATTGATTAGAAGTCATTTTCTAGATTATTCCCTCACTGATCAAGTTTCAAGGTACCAAACTTGTACCAAACTTGGAAAATAGACTTCTTTCTCCTTAAAAACATATGCCCCTTGGGACAACTCGTTCCTAACTCCTAGCATAATTTGTTCATATATTTTCTACACCAGCAAACACACCAGCCGTCCATAAATTGTTTTCACTACTGTGTCTAAATCAGTTATGCGTGCCCGTGAAGGACCCCGTCTACCCCACAATCATCATTTTGTCCAAAGGTATTATACAAAATGATTATGAGGCATGAAATCATAAAATTCGGGTAGTTGGGAGGTGACTGGTATGCAGTAAGTTATACAAAAACTTGTTTTTCGTATGATTTTAGGATATTTAAATCCATTTTCAGGAGTCTGAAGCTCGGTAGTCAGGGTTCCGATCTGTTTGAAAATTATGGAGGGTGTAAAATAGACCTTGA</canonical>
            <polymorphic>CCATATTCTCGAACGACTTCTCATTCGTCATATCGTACACACACATTACTCCATGCGCCGAGTGGTAGTACGAGTTGTATATCGTTCGGTATCGCTCCATTCCAGCGGTATCCCACAGTTCTAATCGGATCTGCAATCAATTCGAAAATAATTGCTGACCAGAAAGATGGTTATCAGTGTGATTCATTTGTGTGGGAGTTTCTGATAAGAGACACCAAAAAATAGAGTGTTCAAAACTCCAAATTAAAAATCAATGTCTATTTTCTCAAAACGATATTTTTTCGATATTTGCCAAAGATTGGAACAGGAGAGGAAATCCTACATACACACAAAGGGTAAAGCAAACAAAAAAGGTTACCTTATCCCGTCCCAGTTTGATAGTTTTCAATTTGAAATCCACGCCTAGTGTACTAATGTGATCCATTCTGAAGTTGTTCTCGGCGAACCTCAGAAGAATGCATGATTTGCCGCAATTGTGATCCCCAACGACAACTATCTGYAATTGATTGGAATTGGTTGGACTAGGTTTGATTGATTAGAAGTCATTTTCTAGATTATTCCCTCACTGATCAAGTTTCAAGGTACCAAACTTGTACCAAACTTGGAAAATAGACTTCTTTCTCCTTAAAAACATATGCCCCTTGGGACAACTCGTTCCTAACTCCTAGCATAATTTGTTCATATATTTTCTACACCAGCAAACACACCAGCCGTCCATAAATTGTTTTCACTACTGTGTCTAAATCAGTTATGCGTGCCCGTGAAGGACCCCGTCTACCCCACAATCATCATTTTGTCCAAAGGTATTATACAAAATGATTATGAGGCATGAAATCATAAAATTCGGGTAGTTGGGAGGTGACTGGTATGCAGTAAGTTATACAAAAACTTGTTTTTCGTATGATTTTAGGATATTTAAATCCATTTTCAGGAGTCTGAAGCTCGGTAGTCAGGGTTCCGATCTGTTTGAAAATTATGGAGGGTGTAAAATAGACCTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCCATTCTGAAGTTGTTCTC</pcr_primer_p1>
		<pcr_primer_p2>TAGGAGTTAGGAACGAGTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCCATTCTGAAGTTGTTCTCGGCGAACCTCAGAAGAATGCATGATTTGCCGCAATTGTGATCCCCAACGACAACTATCTGTAATTGATTGGAATTGGTTGGACTAGGTTTGATTGATTAGAAGTCATTTTCTAGATTATTCCCTCACTGATCAAGTTTCAAGGTACCAAACTTGTACCAAACTTGGAAAATAGACTTCTTTCTCCTTAAAAACATATGCCCCTTGGGACAACTCGTTCCTAACTCCTA</canonical_amplicon>
		<polymorphic_amplicon>GATCCATTCTGAAGTTGTTCTCGGCGAACCTCAGAAGAATGCATGATTTGCCGCAATTGTGATCCCCAACGACAACTATCTGYAATTGATTGGAATTGGTTGGACTAGGTTTGATTGATTAGAAGTCATTTTCTAGATTATTCCCTCACTGATCAAGTTTCAAGGTACCAAACTTGTACCAAACTTGGAAAATAGACTTCTTTCTCCTTAAAAACATATGCCCCTTGGGACAACTCGTTCCTAACTCCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20613</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1257994</contig_pos>
        <strand>+</strand>
        <context>ATAATTACTA[C/T]AAAATCTGCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTATTCAGTAGTATAAGAAATTTTTGATTTTAATTCAACATAATTACTA</left_flank>
        <right_flank>AAAATCTGCGAGTTTCAAATATTAATTGACAGCTTGATAATTTTTATCAC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATTGGCACCGTTCTCATTTCTGGGCTAATTTTGAAAATCTCGGTTTTTTTATCATCAATATAGAATACTTTCTCAGAATGTAATCTAAACTTTCCGAATCAATAAAAACCATTCCATAATACTTTTTTCAGGACTCCTGACTAAATTCTTCTCCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTCACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATGGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAGAGCAAAACAGTAAATAAGTGGGAGCGTCCAATCAGAAAGAGCTTCCAAAAAATGAAATGTTTTTATTATCCATAAACTATTCAGTAGTATAAGAAATTTTTGATTTTAATTCAACATAATTACTATAAAATCTGCGAGTTTCAAATATTAATTGACAGCTTGATAATTTTTATCACATTTGAAATGAATTTAGGACCTCGTCGGGTGTTTCGGTGTTCAAAGATAAACGTACTAGCAATGGGACAAAATTATTGTCAAAGAGCATAATTATCTTTACAGACTAAATTGTTTAAAGAACCATAATCATCCTCACAGATGAAATTTTTTCAGAGAATCAAAGTTATATTTAATCCCTATAAATAAGGGGAATTATCTTAAAGGACCAACATTATTTTTGATCATCAAAATATCTGACAAAAGCAGTCTGAAAAAGTTATTAAAAGAATTTTTGGAATGAGCTTGAGGTTTTTTTTTTGAAAAAGTGCTACAAAAAAAATAGAAAATCTTACCCTTATTCTCTGATTTTGCGACAAAAAAACCGAATTTTCTCAACGGAACTGAGCACGAAATTCAACTAAAAGTTTCAATGCGTCATTTTCTTTCGACCGAGGTTCAGCTTTTTGTTG</canonical>
            <polymorphic>GAAATTGGCACCGTTCTCATTTCTGGGCTAATTTTGAAAATCTCGGTTTTTTTATCATCAATATAGAATACTTTCTCAGAATGTAATCTAAACTTTCCGAATCAATAAAAACCATTCCATAATACTTTTTTCAGGACTCCTGACTAAATTCTTCTCCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTCACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATGGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAGAGCAAAACAGTAAATAAGTGGGAGCGTCCAATCAGAAAGAGCTTCCAAAAAATGAAATGTTTTTATTATCCATAAACTATTCAGTAGTATAAGAAATTTTTGATTTTAATTCAACATAATTACTAYAAAATCTGCGAGTTTCAAATATTAATTGACAGCTTGATAATTTTTATCACATTTGAAATGAATTTAGGACCTCGTCGGGTGTTTCGGTGTTCAAAGATAAACGTACTAGCAATGGGACAAAATTATTGTCAAAGAGCATAATTATCTTTACAGACTAAATTGTTTAAAGAACCATAATCATCCTCACAGATGAAATTTTTTCAGAGAATCAAAGTTATATTTAATCCCTATAAATAAGGGGAATTATCTTAAAGGACCAACATTATTTTTGATCATCAAAATATCTGACAAAAGCAGTCTGAAAAAGTTATTAAAAGAATTTTTGGAATGAGCTTGAGGTTTTTTTTTTGAAAAAGTGCTACAAAAAAAATAGAAAATCTTACCCTTATTCTCTGATTTTGCGACAAAAAAACCGAATTTTCTCAACGGAACTGAGCACGAAATTCAACTAAAAGTTTCAATGCGTCATTTTCTTTCGACCGAGGTTCAGCTTTTTGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGCAAAACAGTAAATAAGTGG</pcr_primer_p1>
		<pcr_primer_p2>GTCCCATTGCTAGTACGTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAGCAAAACAGTAAATAAGTGGGAGCGTCCAATCAGAAAGAGCTTCCAAAAAATGAAATGTTTTTATTATCCATAAACTATTCAGTAGTATAAGAAATTTTTGATTTTAATTCAACATAATTACTATAAAATCTGCGAGTTTCAAATATTAATTGACAGCTTGATAATTTTTATCACATTTGAAATGAATTTAGGACCTCGTCGGGTGTTTCGGTGTTCAAAGATAAACGTACTAGCAATGGGAC</canonical_amplicon>
		<polymorphic_amplicon>AGAGCAAAACAGTAAATAAGTGGGAGCGTCCAATCAGAAAGAGCTTCCAAAAAATGAAATGTTTTTATTATCCATAAACTATTCAGTAGTATAAGAAATTTTTGATTTTAATTCAACATAATTACTAYAAAATCTGCGAGTTTCAAATATTAATTGACAGCTTGATAATTTTTATCACATTTGAAATGAATTTAGGACCTCGTCGGGTGTTTCGGTGTTCAAAGATAAACGTACTAGCAATGGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20614</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1257955</contig_pos>
        <strand>+</strand>
        <context>CTATTCAGTA[A/G]TATAAGAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGAGCTTCCAAAAAATGAAATGTTTTTATTATCCATAAACTATTCAGTA</left_flank>
        <right_flank>TATAAGAAATTTTTGATTTTAATTCAACATAATTACTATAAAATCTGCGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTTCGTACAAATCCAACAAAGCTAGACGAACGATTTGAAATTGGCACCGTTCTCATTTCTGGGCTAATTTTGAAAATCTCGGTTTTTTTATCATCAATATAGAATACTTTCTCAGAATGTAATCTAAACTTTCCGAATCAATAAAAACCATTCCATAATACTTTTTTCAGGACTCCTGACTAAATTCTTCTCCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTCACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATGGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAGAGCAAAACAGTAAATAAGTGGGAGCGTCCAATCAGAAAGAGCTTCCAAAAAATGAAATGTTTTTATTATCCATAAACTATTCAGTAGTATAAGAAATTTTTGATTTTAATTCAACATAATTACTATAAAATCTGCGAGTTTCAAATATTAATTGACAGCTTGATAATTTTTATCACATTTGAAATGAATTTAGGACCTCGTCGGGTGTTTCGGTGTTCAAAGATAAACGTACTAGCAATGGGACAAAATTATTGTCAAAGAGCATAATTATCTTTACAGACTAAATTGTTTAAAGAACCATAATCATCCTCACAGATGAAATTTTTTCAGAGAATCAAAGTTATATTTAATCCCTATAAATAAGGGGAATTATCTTAAAGGACCAACATTATTTTTGATCATCAAAATATCTGACAAAAGCAGTCTGAAAAAGTTATTAAAAGAATTTTTGGAATGAGCTTGAGGTTTTTTTTTTGAAAAAGTGCTACAAAAAAAATAGAAAATCTTACCCTTATTCTCTGATTTTGCGACAAAAAAACCGAATTTTCTCAACGGAACTGAGCACGAAATTCAACTAAAAGTTTCAA</canonical>
            <polymorphic>CATTTTCGTACAAATCCAACAAAGCTAGACGAACGATTTGAAATTGGCACCGTTCTCATTTCTGGGCTAATTTTGAAAATCTCGGTTTTTTTATCATCAATATAGAATACTTTCTCAGAATGTAATCTAAACTTTCCGAATCAATAAAAACCATTCCATAATACTTTTTTCAGGACTCCTGACTAAATTCTTCTCCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTCACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATGGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAGAGCAAAACAGTAAATAAGTGGGAGCGTCCAATCAGAAAGAGCTTCCAAAAAATGAAATGTTTTTATTATCCATAAACTATTCAGTARTATAAGAAATTTTTGATTTTAATTCAACATAATTACTATAAAATCTGCGAGTTTCAAATATTAATTGACAGCTTGATAATTTTTATCACATTTGAAATGAATTTAGGACCTCGTCGGGTGTTTCGGTGTTCAAAGATAAACGTACTAGCAATGGGACAAAATTATTGTCAAAGAGCATAATTATCTTTACAGACTAAATTGTTTAAAGAACCATAATCATCCTCACAGATGAAATTTTTTCAGAGAATCAAAGTTATATTTAATCCCTATAAATAAGGGGAATTATCTTAAAGGACCAACATTATTTTTGATCATCAAAATATCTGACAAAAGCAGTCTGAAAAAGTTATTAAAAGAATTTTTGGAATGAGCTTGAGGTTTTTTTTTTGAAAAAGTGCTACAAAAAAAATAGAAAATCTTACCCTTATTCTCTGATTTTGCGACAAAAAAACCGAATTTTCTCAACGGAACTGAGCACGAAATTCAACTAAAAGTTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGCAAAACAGTAAATAAGTGG</pcr_primer_p1>
		<pcr_primer_p2>GTCCCATTGCTAGTACGTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAGCAAAACAGTAAATAAGTGGGAGCGTCCAATCAGAAAGAGCTTCCAAAAAATGAAATGTTTTTATTATCCATAAACTATTCAGTAGTATAAGAAATTTTTGATTTTAATTCAACATAATTACTATAAAATCTGCGAGTTTCAAATATTAATTGACAGCTTGATAATTTTTATCACATTTGAAATGAATTTAGGACCTCGTCGGGTGTTTCGGTGTTCAAAGATAAACGTACTAGCAATGGGAC</canonical_amplicon>
		<polymorphic_amplicon>AGAGCAAAACAGTAAATAAGTGGGAGCGTCCAATCAGAAAGAGCTTCCAAAAAATGAAATGTTTTTATTATCCATAAACTATTCAGTARTATAAGAAATTTTTGATTTTAATTCAACATAATTACTATAAAATCTGCGAGTTTCAAATATTAATTGACAGCTTGATAATTTTTATCACATTTGAAATGAATTTAGGACCTCGTCGGGTGTTTCGGTGTTCAAAGATAAACGTACTAGCAATGGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20615</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1257922</contig_pos>
        <strand>+</strand>
        <context>TCCAAAAAAT[A/G]AAATGTTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAACAGTAAATAAGTGGGAGCGTCCAATCAGAAAGAGCTTCCAAAAAAT</left_flank>
        <right_flank>AAATGTTTTTATTATCCATAAACTATTCAGTAGTATAAGAAATTTTTGAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATGTATAAATAAAACTTCAGTTTTGTTCACACATTTTCGTACAAATCCAACAAAGCTAGACGAACGATTTGAAATTGGCACCGTTCTCATTTCTGGGCTAATTTTGAAAATCTCGGTTTTTTTATCATCAATATAGAATACTTTCTCAGAATGTAATCTAAACTTTCCGAATCAATAAAAACCATTCCATAATACTTTTTTCAGGACTCCTGACTAAATTCTTCTCCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTCACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATGGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAGAGCAAAACAGTAAATAAGTGGGAGCGTCCAATCAGAAAGAGCTTCCAAAAAATGAAATGTTTTTATTATCCATAAACTATTCAGTAGTATAAGAAATTTTTGATTTTAATTCAACATAATTACTATAAAATCTGCGAGTTTCAAATATTAATTGACAGCTTGATAATTTTTATCACATTTGAAATGAATTTAGGACCTCGTCGGGTGTTTCGGTGTTCAAAGATAAACGTACTAGCAATGGGACAAAATTATTGTCAAAGAGCATAATTATCTTTACAGACTAAATTGTTTAAAGAACCATAATCATCCTCACAGATGAAATTTTTTCAGAGAATCAAAGTTATATTTAATCCCTATAAATAAGGGGAATTATCTTAAAGGACCAACATTATTTTTGATCATCAAAATATCTGACAAAAGCAGTCTGAAAAAGTTATTAAAAGAATTTTTGGAATGAGCTTGAGGTTTTTTTTTTGAAAAAGTGCTACAAAAAAAATAGAAAATCTTACCCTTATTCTCTGATTTTGCGACAAAAAAACCGAATTTTCTCAACG</canonical>
            <polymorphic>ATATGTATAAATAAAACTTCAGTTTTGTTCACACATTTTCGTACAAATCCAACAAAGCTAGACGAACGATTTGAAATTGGCACCGTTCTCATTTCTGGGCTAATTTTGAAAATCTCGGTTTTTTTATCATCAATATAGAATACTTTCTCAGAATGTAATCTAAACTTTCCGAATCAATAAAAACCATTCCATAATACTTTTTTCAGGACTCCTGACTAAATTCTTCTCCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTCACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATGGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAGAGCAAAACAGTAAATAAGTGGGAGCGTCCAATCAGAAAGAGCTTCCAAAAAATRAAATGTTTTTATTATCCATAAACTATTCAGTAGTATAAGAAATTTTTGATTTTAATTCAACATAATTACTATAAAATCTGCGAGTTTCAAATATTAATTGACAGCTTGATAATTTTTATCACATTTGAAATGAATTTAGGACCTCGTCGGGTGTTTCGGTGTTCAAAGATAAACGTACTAGCAATGGGACAAAATTATTGTCAAAGAGCATAATTATCTTTACAGACTAAATTGTTTAAAGAACCATAATCATCCTCACAGATGAAATTTTTTCAGAGAATCAAAGTTATATTTAATCCCTATAAATAAGGGGAATTATCTTAAAGGACCAACATTATTTTTGATCATCAAAATATCTGACAAAAGCAGTCTGAAAAAGTTATTAAAAGAATTTTTGGAATGAGCTTGAGGTTTTTTTTTTGAAAAAGTGCTACAAAAAAAATAGAAAATCTTACCCTTATTCTCTGATTTTGCGACAAAAAAACCGAATTTTCTCAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGCAAAACAGTAAATAAGTGG</pcr_primer_p1>
		<pcr_primer_p2>GTCCCATTGCTAGTACGTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAGCAAAACAGTAAATAAGTGGGAGCGTCCAATCAGAAAGAGCTTCCAAAAAATGAAATGTTTTTATTATCCATAAACTATTCAGTAGTATAAGAAATTTTTGATTTTAATTCAACATAATTACTATAAAATCTGCGAGTTTCAAATATTAATTGACAGCTTGATAATTTTTATCACATTTGAAATGAATTTAGGACCTCGTCGGGTGTTTCGGTGTTCAAAGATAAACGTACTAGCAATGGGAC</canonical_amplicon>
		<polymorphic_amplicon>AGAGCAAAACAGTAAATAAGTGGGAGCGTCCAATCAGAAAGAGCTTCCAAAAAATRAAATGTTTTTATTATCCATAAACTATTCAGTAGTATAAGAAATTTTTGATTTTAATTCAACATAATTACTATAAAATCTGCGAGTTTCAAATATTAATTGACAGCTTGATAATTTTTATCACATTTGAAATGAATTTAGGACCTCGTCGGGTGTTTCGGTGTTCAAAGATAAACGTACTAGCAATGGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20616</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1257859</contig_pos>
        <strand></strand>
        <context>ttggtgcggg[A/G]ttctATAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATCTCATGGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGG</left_flank>
        <right_flank>TTCTATAAGAGCAAAACAGTAAATAAGTGGGAGCGTCCAATCAGAAAGAG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCTACAGTTCACTGAAAGTTTTGTTTTATATATCTTATTTATATTATGGACCGGTACTGCGAATATGTATAAATAAAACTTCAGTTTTGTTCACACATTTTCGTACAAATCCAACAAAGCTAGACGAACGATTTGAAATTGGCACCGTTCTCATTTCTGGGCTAATTTTGAAAATCTCGGTTTTTTTATCATCAATATAGAATACTTTCTCAGAATGTAATCTAAACTTTCCGAATCAATAAAAACCATTCCATAATACTTTTTTCAGGACTCCTGACTAAATTCTTCTCCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTCACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATGGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAGAGCAAAACAGTAAATAAGTGGGAGCGTCCAATCAGAAAGAGCTTCCAAAAAATGAAATGTTTTTATTATCCATAAACTATTCAGTAGTATAAGAAATTTTTGATTTTAATTCAACATAATTACTATAAAATCTGCGAGTTTCAAATATTAATTGACAGCTTGATAATTTTTATCACATTTGAAATGAATTTAGGACCTCGTCGGGTGTTTCGGTGTTCAAAGATAAACGTACTAGCAATGGGACAAAATTATTGTCAAAGAGCATAATTATCTTTACAGACTAAATTGTTTAAAGAACCATAATCATCCTCACAGATGAAATTTTTTCAGAGAATCAAAGTTATATTTAATCCCTATAAATAAGGGGAATTATCTTAAAGGACCAACATTATTTTTGATCATCAAAATATCTGACAAAAGCAGTCTGAAAAAGTTATTAAAAGAATTTTTGGAATGAGCTTGAGGTTTTTTTTTTGAAAAAGTGCTACAAA</canonical>
            <polymorphic>GCCTACAGTTCACTGAAAGTTTTGTTTTATATATCTTATTTATATTATGGACCGGTACTGCGAATATGTATAAATAAAACTTCAGTTTTGTTCACACATTTTCGTACAAATCCAACAAAGCTAGACGAACGATTTGAAATTGGCACCGTTCTCATTTCTGGGCTAATTTTGAAAATCTCGGTTTTTTTATCATCAATATAGAATACTTTCTCAGAATGTAATCTAAACTTTCCGAATCAATAAAAACCATTCCATAATACTTTTTTCAGGACTCCTGACTAAATTCTTCTCCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTCACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATGGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGRTTCTATAAGAGCAAAACAGTAAATAAGTGGGAGCGTCCAATCAGAAAGAGCTTCCAAAAAATGAAATGTTTTTATTATCCATAAACTATTCAGTAGTATAAGAAATTTTTGATTTTAATTCAACATAATTACTATAAAATCTGCGAGTTTCAAATATTAATTGACAGCTTGATAATTTTTATCACATTTGAAATGAATTTAGGACCTCGTCGGGTGTTTCGGTGTTCAAAGATAAACGTACTAGCAATGGGACAAAATTATTGTCAAAGAGCATAATTATCTTTACAGACTAAATTGTTTAAAGAACCATAATCATCCTCACAGATGAAATTTTTTCAGAGAATCAAAGTTATATTTAATCCCTATAAATAAGGGGAATTATCTTAAAGGACCAACATTATTTTTGATCATCAAAATATCTGACAAAAGCAGTCTGAAAAAGTTATTAAAAGAATTTTTGGAATGAGCTTGAGGTTTTTTTTTTGAAAAAGTGCTACAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>342 234 229 159 36</canonical_bands>
                <polymorphic_bands>571 234 159 36</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>342 265 234 159</canonical_bands>
                <polymorphic_bands>607 234 159</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGGTGATCTATATACAACATTT</pcr_primer_p1>
		<pcr_primer_p2>TTGGAAGCTCTTTCTGATTG</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>CCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTCACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATGGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAGAGCAAAACAGTAAATAAGTGGGAGCGTCCAATCAGAAAGAGCTTCCAA</canonical_amplicon>
		<polymorphic_amplicon>CCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTCACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATGGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGRTTCTATAAGAGCAAAACAGTAAATAAGTGGGAGCGTCCAATCAGAAAGAGCTTCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20617</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1257818</contig_pos>
        <strand></strand>
        <context>atatctcatr[G/A]aacccgagat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATG</left_flank>
        <right_flank>AACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCAAAAATTTGACAACCGAGCTTCAAACTCATATAAACGGCCTACAGTTCACTGAAAGTTTTGTTTTATATATCTTATTTATATTATGGACCGGTACTGCGAATATGTATAAATAAAACTTCAGTTTTGTTCACACATTTTCGTACAAATCCAACAAAGCTAGACGAACGATTTGAAATTGGCACCGTTCTCATTTCTGGGCTAATTTTGAAAATCTCGGTTTTTTTATCATCAATATAGAATACTTTCTCAGAATGTAATCTAAACTTTCCGAATCAATAAAAACCATTCCATAATACTTTTTTCAGGACTCCTGACTAAATTCTTCTCCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTCACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATGGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAGAGCAAAACAGTAAATAAGTGGGAGCGTCCAATCAGAAAGAGCTTCCAAAAAATGAAATGTTTTTATTATCCATAAACTATTCAGTAGTATAAGAAATTTTTGATTTTAATTCAACATAATTACTATAAAATCTGCGAGTTTCAAATATTAATTGACAGCTTGATAATTTTTATCACATTTGAAATGAATTTAGGACCTCGTCGGGTGTTTCGGTGTTCAAAGATAAACGTACTAGCAATGGGACAAAATTATTGTCAAAGAGCATAATTATCTTTACAGACTAAATTGTTTAAAGAACCATAATCATCCTCACAGATGAAATTTTTTCAGAGAATCAAAGTTATATTTAATCCCTATAAATAAGGGGAATTATCTTAAAGGACCAACATTATTTTTGATCATCAAAATATCTGACAAAAGCAGTCTGAAAAAGTTATTAAAAGAATTTTT</canonical>
            <polymorphic>TTTCAAAAATTTGACAACCGAGCTTCAAACTCATATAAACGGCCTACAGTTCACTGAAAGTTTTGTTTTATATATCTTATTTATATTATGGACCGGTACTGCGAATATGTATAAATAAAACTTCAGTTTTGTTCACACATTTTCGTACAAATCCAACAAAGCTAGACGAACGATTTGAAATTGGCACCGTTCTCATTTCTGGGCTAATTTTGAAAATCTCGGTTTTTTTATCATCAATATAGAATACTTTCTCAGAATGTAATCTAAACTTTCCGAATCAATAAAAACCATTCCATAATACTTTTTTCAGGACTCCTGACTAAATTCTTCTCCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTCACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATGRAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAGAGCAAAACAGTAAATAAGTGGGAGCGTCCAATCAGAAAGAGCTTCCAAAAAATGAAATGTTTTTATTATCCATAAACTATTCAGTAGTATAAGAAATTTTTGATTTTAATTCAACATAATTACTATAAAATCTGCGAGTTTCAAATATTAATTGACAGCTTGATAATTTTTATCACATTTGAAATGAATTTAGGACCTCGTCGGGTGTTTCGGTGTTCAAAGATAAACGTACTAGCAATGGGACAAAATTATTGTCAAAGAGCATAATTATCTTTACAGACTAAATTGTTTAAAGAACCATAATCATCCTCACAGATGAAATTTTTTCAGAGAATCAAAGTTATATTTAATCCCTATAAATAAGGGGAATTATCTTAAAGGACCAACATTATTTTTGATCATCAAAATATCTGACAAAAGCAGTCTGAAAAAGTTATTAAAAGAATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>499 316 185</canonical_bands>
                <polymorphic_bands>815 185</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGGTGATCTATATACAACATTT</pcr_primer_p1>
		<pcr_primer_p2>CCACTTATTTACTGTTTTGCTCT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTCACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATGGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAGAGCAAAACAGTAAATAAGTGG</canonical_amplicon>
		<polymorphic_amplicon>CCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTCACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATGRAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAGAGCAAAACAGTAAATAAGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20618</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1257817</contig_pos>
        <strand></strand>
        <context>gatatctcat[G/A]raacccgaga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCAT</left_flank>
        <right_flank>GAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCAAAAATTTGACAACCGAGCTTCAAACTCATATAAACGGCCTACAGTTCACTGAAAGTTTTGTTTTATATATCTTATTTATATTATGGACCGGTACTGCGAATATGTATAAATAAAACTTCAGTTTTGTTCACACATTTTCGTACAAATCCAACAAAGCTAGACGAACGATTTGAAATTGGCACCGTTCTCATTTCTGGGCTAATTTTGAAAATCTCGGTTTTTTTATCATCAATATAGAATACTTTCTCAGAATGTAATCTAAACTTTCCGAATCAATAAAAACCATTCCATAATACTTTTTTCAGGACTCCTGACTAAATTCTTCTCCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTCACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATGGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAGAGCAAAACAGTAAATAAGTGGGAGCGTCCAATCAGAAAGAGCTTCCAAAAAATGAAATGTTTTTATTATCCATAAACTATTCAGTAGTATAAGAAATTTTTGATTTTAATTCAACATAATTACTATAAAATCTGCGAGTTTCAAATATTAATTGACAGCTTGATAATTTTTATCACATTTGAAATGAATTTAGGACCTCGTCGGGTGTTTCGGTGTTCAAAGATAAACGTACTAGCAATGGGACAAAATTATTGTCAAAGAGCATAATTATCTTTACAGACTAAATTGTTTAAAGAACCATAATCATCCTCACAGATGAAATTTTTTCAGAGAATCAAAGTTATATTTAATCCCTATAAATAAGGGGAATTATCTTAAAGGACCAACATTATTTTTGATCATCAAAATATCTGACAAAAGCAGTCTGAAAAAGTTATTAAAAGAATTTT</canonical>
            <polymorphic>TTTTCAAAAATTTGACAACCGAGCTTCAAACTCATATAAACGGCCTACAGTTCACTGAAAGTTTTGTTTTATATATCTTATTTATATTATGGACCGGTACTGCGAATATGTATAAATAAAACTTCAGTTTTGTTCACACATTTTCGTACAAATCCAACAAAGCTAGACGAACGATTTGAAATTGGCACCGTTCTCATTTCTGGGCTAATTTTGAAAATCTCGGTTTTTTTATCATCAATATAGAATACTTTCTCAGAATGTAATCTAAACTTTCCGAATCAATAAAAACCATTCCATAATACTTTTTTCAGGACTCCTGACTAAATTCTTCTCCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTCACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATRGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAGAGCAAAACAGTAAATAAGTGGGAGCGTCCAATCAGAAAGAGCTTCCAAAAAATGAAATGTTTTTATTATCCATAAACTATTCAGTAGTATAAGAAATTTTTGATTTTAATTCAACATAATTACTATAAAATCTGCGAGTTTCAAATATTAATTGACAGCTTGATAATTTTTATCACATTTGAAATGAATTTAGGACCTCGTCGGGTGTTTCGGTGTTCAAAGATAAACGTACTAGCAATGGGACAAAATTATTGTCAAAGAGCATAATTATCTTTACAGACTAAATTGTTTAAAGAACCATAATCATCCTCACAGATGAAATTTTTTCAGAGAATCAAAGTTATATTTAATCCCTATAAATAAGGGGAATTATCTTAAAGGACCAACATTATTTTTGATCATCAAAATATCTGACAAAAGCAGTCTGAAAAAGTTATTAAAAGAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>498 316 186</canonical_bands>
                <polymorphic_bands>814 186</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGGTGATCTATATACAACATTT</pcr_primer_p1>
		<pcr_primer_p2>CCACTTATTTACTGTTTTGCTCT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTCACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATGGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAGAGCAAAACAGTAAATAAGTGG</canonical_amplicon>
		<polymorphic_amplicon>CCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTCACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATRGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAGAGCAAAACAGTAAATAAGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20619</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1257783</contig_pos>
        <strand></strand>
        <context>atgtcacaag[C/T]attttattaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAG</left_flank>
        <right_flank>ATTTTATTAATTGACAGATTTTCGATATCTCATGGAACCCGAGATGATTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTAGTCTAGGTCTGTTTTACACTTTTGAAAATTTTCAAAAATTTGACAACCGAGCTTCAAACTCATATAAACGGCCTACAGTTCACTGAAAGTTTTGTTTTATATATCTTATTTATATTATGGACCGGTACTGCGAATATGTATAAATAAAACTTCAGTTTTGTTCACACATTTTCGTACAAATCCAACAAAGCTAGACGAACGATTTGAAATTGGCACCGTTCTCATTTCTGGGCTAATTTTGAAAATCTCGGTTTTTTTATCATCAATATAGAATACTTTCTCAGAATGTAATCTAAACTTTCCGAATCAATAAAAACCATTCCATAATACTTTTTTCAGGACTCCTGACTAAATTCTTCTCCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTCACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATGGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAGAGCAAAACAGTAAATAAGTGGGAGCGTCCAATCAGAAAGAGCTTCCAAAAAATGAAATGTTTTTATTATCCATAAACTATTCAGTAGTATAAGAAATTTTTGATTTTAATTCAACATAATTACTATAAAATCTGCGAGTTTCAAATATTAATTGACAGCTTGATAATTTTTATCACATTTGAAATGAATTTAGGACCTCGTCGGGTGTTTCGGTGTTCAAAGATAAACGTACTAGCAATGGGACAAAATTATTGTCAAAGAGCATAATTATCTTTACAGACTAAATTGTTTAAAGAACCATAATCATCCTCACAGATGAAATTTTTTCAGAGAATCAAAGTTATATTTAATCCCTATAAATAAGGGGAATTATCTTAAAGGACCAACATTATTTTTGATCATCAAAATATCTGAC</canonical>
            <polymorphic>TTTCTAGTCTAGGTCTGTTTTACACTTTTGAAAATTTTCAAAAATTTGACAACCGAGCTTCAAACTCATATAAACGGCCTACAGTTCACTGAAAGTTTTGTTTTATATATCTTATTTATATTATGGACCGGTACTGCGAATATGTATAAATAAAACTTCAGTTTTGTTCACACATTTTCGTACAAATCCAACAAAGCTAGACGAACGATTTGAAATTGGCACCGTTCTCATTTCTGGGCTAATTTTGAAAATCTCGGTTTTTTTATCATCAATATAGAATACTTTCTCAGAATGTAATCTAAACTTTCCGAATCAATAAAAACCATTCCATAATACTTTTTTCAGGACTCCTGACTAAATTCTTCTCCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTCACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGYATTTTATTAATTGACAGATTTTCGATATCTCATGGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAGAGCAAAACAGTAAATAAGTGGGAGCGTCCAATCAGAAAGAGCTTCCAAAAAATGAAATGTTTTTATTATCCATAAACTATTCAGTAGTATAAGAAATTTTTGATTTTAATTCAACATAATTACTATAAAATCTGCGAGTTTCAAATATTAATTGACAGCTTGATAATTTTTATCACATTTGAAATGAATTTAGGACCTCGTCGGGTGTTTCGGTGTTCAAAGATAAACGTACTAGCAATGGGACAAAATTATTGTCAAAGAGCATAATTATCTTTACAGACTAAATTGTTTAAAGAACCATAATCATCCTCACAGATGAAATTTTTTCAGAGAATCAAAGTTATATTTAATCCCTATAAATAAGGGGAATTATCTTAAAGGACCAACATTATTTTTGATCATCAAAATATCTGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGGTGATCTATATACAACATTT</pcr_primer_p1>
		<pcr_primer_p2>CCACTTATTTACTGTTTTGCTCT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTCACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATGGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAGAGCAAAACAGTAAATAAGTGG</canonical_amplicon>
		<polymorphic_amplicon>CCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTCACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGYATTTTATTAATTGACAGATTTTCGATATCTCATGGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAGAGCAAAACAGTAAATAAGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20620</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1257726</contig_pos>
        <strand></strand>
        <context>catttcaatt[C/T]acgtgaagga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATT</left_flank>
        <right_flank>ACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGGGTATAACACATATCTAGATTGAATACTTCGAATTCCCAGGATTTTTCGAAACTTTCTAGTCTAGGTCTGTTTTACACTTTTGAAAATTTTCAAAAATTTGACAACCGAGCTTCAAACTCATATAAACGGCCTACAGTTCACTGAAAGTTTTGTTTTATATATCTTATTTATATTATGGACCGGTACTGCGAATATGTATAAATAAAACTTCAGTTTTGTTCACACATTTTCGTACAAATCCAACAAAGCTAGACGAACGATTTGAAATTGGCACCGTTCTCATTTCTGGGCTAATTTTGAAAATCTCGGTTTTTTTATCATCAATATAGAATACTTTCTCAGAATGTAATCTAAACTTTCCGAATCAATAAAAACCATTCCATAATACTTTTTTCAGGACTCCTGACTAAATTCTTCTCCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTCACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATGGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAGAGCAAAACAGTAAATAAGTGGGAGCGTCCAATCAGAAAGAGCTTCCAAAAAATGAAATGTTTTTATTATCCATAAACTATTCAGTAGTATAAGAAATTTTTGATTTTAATTCAACATAATTACTATAAAATCTGCGAGTTTCAAATATTAATTGACAGCTTGATAATTTTTATCACATTTGAAATGAATTTAGGACCTCGTCGGGTGTTTCGGTGTTCAAAGATAAACGTACTAGCAATGGGACAAAATTATTGTCAAAGAGCATAATTATCTTTACAGACTAAATTGTTTAAAGAACCATAATCATCCTCACAGATGAAATTTTTTCAGAGAATCAAAGTTATATTTAATCCCTATA</canonical>
            <polymorphic>GGAGGGTATAACACATATCTAGATTGAATACTTCGAATTCCCAGGATTTTTCGAAACTTTCTAGTCTAGGTCTGTTTTACACTTTTGAAAATTTTCAAAAATTTGACAACCGAGCTTCAAACTCATATAAACGGCCTACAGTTCACTGAAAGTTTTGTTTTATATATCTTATTTATATTATGGACCGGTACTGCGAATATGTATAAATAAAACTTCAGTTTTGTTCACACATTTTCGTACAAATCCAACAAAGCTAGACGAACGATTTGAAATTGGCACCGTTCTCATTTCTGGGCTAATTTTGAAAATCTCGGTTTTTTTATCATCAATATAGAATACTTTCTCAGAATGTAATCTAAACTTTCCGAATCAATAAAAACCATTCCATAATACTTTTTTCAGGACTCCTGACTAAATTCTTCTCCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTYACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATGGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAGAGCAAAACAGTAAATAAGTGGGAGCGTCCAATCAGAAAGAGCTTCCAAAAAATGAAATGTTTTTATTATCCATAAACTATTCAGTAGTATAAGAAATTTTTGATTTTAATTCAACATAATTACTATAAAATCTGCGAGTTTCAAATATTAATTGACAGCTTGATAATTTTTATCACATTTGAAATGAATTTAGGACCTCGTCGGGTGTTTCGGTGTTCAAAGATAAACGTACTAGCAATGGGACAAAATTATTGTCAAAGAGCATAATTATCTTTACAGACTAAATTGTTTAAAGAACCATAATCATCCTCACAGATGAAATTTTTTCAGAGAATCAAAGTTATATTTAATCCCTATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACGTG</site>
                <isoschizomers>
                    <enzyme>AcvI</enzyme>
                    <enzyme>BbrPI</enzyme>
                    <enzyme>Eco72I</enzyme>
                    <enzyme>PmaCI</enzyme>
                    <enzyme>PmlI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>155 151 97 82 76 72 68 64 49 47 46 34 32 13 8 4 2</canonical_bands>
                <polymorphic_bands>155 151 97 82 76 76 68 64 49 47 46 34 32 13 8 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGGTGATCTATATACAACATTT</pcr_primer_p1>
		<pcr_primer_p2>CCACTTATTTACTGTTTTGCTCT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTCACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATGGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAGAGCAAAACAGTAAATAAGTGG</canonical_amplicon>
		<polymorphic_amplicon>CCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTYACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATGGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAGAGCAAAACAGTAAATAAGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20621</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1257640</contig_pos>
        <strand>+</strand>
        <context>ACTCCTGACT[A/G]AATTCTTCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCGAATCAATAAAAACCATTCCATAATACTTTTTTCAGGACTCCTGACT</left_flank>
        <right_flank>AATTCTTCTCCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTTATAAAGTTGAATCTTGATCATTCGACCATTTTCGGGAGTCTGGAGCTCAGCTGTCTAGTTTCCGATCACTTTGAAATTTTTGGAGGGTATAACACATATCTAGATTGAATACTTCGAATTCCCAGGATTTTTCGAAACTTTCTAGTCTAGGTCTGTTTTACACTTTTGAAAATTTTCAAAAATTTGACAACCGAGCTTCAAACTCATATAAACGGCCTACAGTTCACTGAAAGTTTTGTTTTATATATCTTATTTATATTATGGACCGGTACTGCGAATATGTATAAATAAAACTTCAGTTTTGTTCACACATTTTCGTACAAATCCAACAAAGCTAGACGAACGATTTGAAATTGGCACCGTTCTCATTTCTGGGCTAATTTTGAAAATCTCGGTTTTTTTATCATCAATATAGAATACTTTCTCAGAATGTAATCTAAACTTTCCGAATCAATAAAAACCATTCCATAATACTTTTTTCAGGACTCCTGACTAAATTCTTCTCCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTCACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATGGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAGAGCAAAACAGTAAATAAGTGGGAGCGTCCAATCAGAAAGAGCTTCCAAAAAATGAAATGTTTTTATTATCCATAAACTATTCAGTAGTATAAGAAATTTTTGATTTTAATTCAACATAATTACTATAAAATCTGCGAGTTTCAAATATTAATTGACAGCTTGATAATTTTTATCACATTTGAAATGAATTTAGGACCTCGTCGGGTGTTTCGGTGTTCAAAGATAAACGTACTAGCAATGGGACAAAATTATTGTCAAAGAGCATAATTATC</canonical>
            <polymorphic>TGGTTATAAAGTTGAATCTTGATCATTCGACCATTTTCGGGAGTCTGGAGCTCAGCTGTCTAGTTTCCGATCACTTTGAAATTTTTGGAGGGTATAACACATATCTAGATTGAATACTTCGAATTCCCAGGATTTTTCGAAACTTTCTAGTCTAGGTCTGTTTTACACTTTTGAAAATTTTCAAAAATTTGACAACCGAGCTTCAAACTCATATAAACGGCCTACAGTTCACTGAAAGTTTTGTTTTATATATCTTATTTATATTATGGACCGGTACTGCGAATATGTATAAATAAAACTTCAGTTTTGTTCACACATTTTCGTACAAATCCAACAAAGCTAGACGAACGATTTGAAATTGGCACCGTTCTCATTTCTGGGCTAATTTTGAAAATCTCGGTTTTTTTATCATCAATATAGAATACTTTCTCAGAATGTAATCTAAACTTTCCGAATCAATAAAAACCATTCCATAATACTTTTTTCAGGACTCCTGACTRAATTCTTCTCCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTCACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATGGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAGAGCAAAACAGTAAATAAGTGGGAGCGTCCAATCAGAAAGAGCTTCCAAAAAATGAAATGTTTTTATTATCCATAAACTATTCAGTAGTATAAGAAATTTTTGATTTTAATTCAACATAATTACTATAAAATCTGCGAGTTTCAAATATTAATTGACAGCTTGATAATTTTTATCACATTTGAAATGAATTTAGGACCTCGTCGGGTGTTTCGGTGTTCAAAGATAAACGTACTAGCAATGGGACAAAATTATTGTCAAAGAGCATAATTATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>322 315 92 86 79 54 42 10</canonical_bands>
                <polymorphic_bands>637 92 86 79 54 42 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCGAATCAATAAAAACCAT</pcr_primer_p1>
		<pcr_primer_p2>CCACTTATTTACTGTTTTGCTCT</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>TTCCGAATCAATAAAAACCATTCCATAATACTTTTTTCAGGACTCCTGACTAAATTCTTCTCCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTCACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATGGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAGAGCAAAACAGTAAATAAGTGG</canonical_amplicon>
		<polymorphic_amplicon>TTCCGAATCAATAAAAACCATTCCATAATACTTTTTTCAGGACTCCTGACTRAATTCTTCTCCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTCACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATGGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAGAGCAAAACAGTAAATAAGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20622</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1257611</contig_pos>
        <strand>+</strand>
        <context>AAAAACCATT[A/C]CATAATACTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATACTTTCTCAGAATGTAATCTAAACTTTCCGAATCAATAAAAACCATT</left_flank>
        <right_flank>CATAATACTTTTTTCAGGACTCCTGACTAAATTCTTCTCCGGTGATCTAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATACAGTAGTGGTCAATAGGATATACTGGTTATAAAGTTGAATCTTGATCATTCGACCATTTTCGGGAGTCTGGAGCTCAGCTGTCTAGTTTCCGATCACTTTGAAATTTTTGGAGGGTATAACACATATCTAGATTGAATACTTCGAATTCCCAGGATTTTTCGAAACTTTCTAGTCTAGGTCTGTTTTACACTTTTGAAAATTTTCAAAAATTTGACAACCGAGCTTCAAACTCATATAAACGGCCTACAGTTCACTGAAAGTTTTGTTTTATATATCTTATTTATATTATGGACCGGTACTGCGAATATGTATAAATAAAACTTCAGTTTTGTTCACACATTTTCGTACAAATCCAACAAAGCTAGACGAACGATTTGAAATTGGCACCGTTCTCATTTCTGGGCTAATTTTGAAAATCTCGGTTTTTTTATCATCAATATAGAATACTTTCTCAGAATGTAATCTAAACTTTCCGAATCAATAAAAACCATTCCATAATACTTTTTTCAGGACTCCTGACTAAATTCTTCTCCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTCACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATGGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAGAGCAAAACAGTAAATAAGTGGGAGCGTCCAATCAGAAAGAGCTTCCAAAAAATGAAATGTTTTTATTATCCATAAACTATTCAGTAGTATAAGAAATTTTTGATTTTAATTCAACATAATTACTATAAAATCTGCGAGTTTCAAATATTAATTGACAGCTTGATAATTTTTATCACATTTGAAATGAATTTAGGACCTCGTCGGGTGTTTCGGTGTTCAAAGATAAACGTACTAGCAATGGGA</canonical>
            <polymorphic>TTTATACAGTAGTGGTCAATAGGATATACTGGTTATAAAGTTGAATCTTGATCATTCGACCATTTTCGGGAGTCTGGAGCTCAGCTGTCTAGTTTCCGATCACTTTGAAATTTTTGGAGGGTATAACACATATCTAGATTGAATACTTCGAATTCCCAGGATTTTTCGAAACTTTCTAGTCTAGGTCTGTTTTACACTTTTGAAAATTTTCAAAAATTTGACAACCGAGCTTCAAACTCATATAAACGGCCTACAGTTCACTGAAAGTTTTGTTTTATATATCTTATTTATATTATGGACCGGTACTGCGAATATGTATAAATAAAACTTCAGTTTTGTTCACACATTTTCGTACAAATCCAACAAAGCTAGACGAACGATTTGAAATTGGCACCGTTCTCATTTCTGGGCTAATTTTGAAAATCTCGGTTTTTTTATCATCAATATAGAATACTTTCTCAGAATGTAATCTAAACTTTCCGAATCAATAAAAACCATTMCATAATACTTTTTTCAGGACTCCTGACTAAATTCTTCTCCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTCACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATGGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAGAGCAAAACAGTAAATAAGTGGGAGCGTCCAATCAGAAAGAGCTTCCAAAAAATGAAATGTTTTTATTATCCATAAACTATTCAGTAGTATAAGAAATTTTTGATTTTAATTCAACATAATTACTATAAAATCTGCGAGTTTCAAATATTAATTGACAGCTTGATAATTTTTATCACATTTGAAATGAATTTAGGACCTCGTCGGGTGTTTCGGTGTTCAAAGATAAACGTACTAGCAATGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTTCAGTTTTGTTCACACAT</pcr_primer_p1>
		<pcr_primer_p2>TTGTATATAGATCACCGGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>AAACTTCAGTTTTGTTCACACATTTTCGTACAAATCCAACAAAGCTAGACGAACGATTTGAAATTGGCACCGTTCTCATTTCTGGGCTAATTTTGAAAATCTCGGTTTTTTTATCATCAATATAGAATACTTTCTCAGAATGTAATCTAAACTTTCCGAATCAATAAAAACCATTCCATAATACTTTTTTCAGGACTCCTGACTAAATTCTTCTCCGGTGATCTATATACAA</canonical_amplicon>
		<polymorphic_amplicon>AAACTTCAGTTTTGTTCACACATTTTCGTACAAATCCAACAAAGCTAGACGAACGATTTGAAATTGGCACCGTTCTCATTTCTGGGCTAATTTTGAAAATCTCGGTTTTTTTATCATCAATATAGAATACTTTCTCAGAATGTAATCTAAACTTTCCGAATCAATAAAAACCATTMCATAATACTTTTTTCAGGACTCCTGACTAAATTCTTCTCCGGTGATCTATATACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20623</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1257511</contig_pos>
        <strand>+</strand>
        <context>GGCACCGTTC[C/T]CATTTCTGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGTACAAATCCAACAAAGCTAGACGAACGATTTGAAATTGGCACCGTTC</left_flank>
        <right_flank>CATTTCTGGGCTAATTTTGAAAATCTCGGTTTTTTTATCATCAATATAGA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACAGTACTGGTAAAAAAAGTAAATTGTGGATTTTGGATGATGTTAATTCGATGTTAAACTGTTAAAAAAGTGCACATTTTTGAACACTTCAAAGCATACTTTATACAGTAGTGGTCAATAGGATATACTGGTTATAAAGTTGAATCTTGATCATTCGACCATTTTCGGGAGTCTGGAGCTCAGCTGTCTAGTTTCCGATCACTTTGAAATTTTTGGAGGGTATAACACATATCTAGATTGAATACTTCGAATTCCCAGGATTTTTCGAAACTTTCTAGTCTAGGTCTGTTTTACACTTTTGAAAATTTTCAAAAATTTGACAACCGAGCTTCAAACTCATATAAACGGCCTACAGTTCACTGAAAGTTTTGTTTTATATATCTTATTTATATTATGGACCGGTACTGCGAATATGTATAAATAAAACTTCAGTTTTGTTCACACATTTTCGTACAAATCCAACAAAGCTAGACGAACGATTTGAAATTGGCACCGTTCTCATTTCTGGGCTAATTTTGAAAATCTCGGTTTTTTTATCATCAATATAGAATACTTTCTCAGAATGTAATCTAAACTTTCCGAATCAATAAAAACCATTCCATAATACTTTTTTCAGGACTCCTGACTAAATTCTTCTCCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTCACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATGGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAGAGCAAAACAGTAAATAAGTGGGAGCGTCCAATCAGAAAGAGCTTCCAAAAAATGAAATGTTTTTATTATCCATAAACTATTCAGTAGTATAAGAAATTTTTGATTTTAATTCAACATAATTACTATAAAATCTGCGAGTTTCA</canonical>
            <polymorphic>TACAGTACTGGTAAAAAAAGTAAATTGTGGATTTTGGATGATGTTAATTCGATGTTAAACTGTTAAAAAAGTGCACATTTTTGAACACTTCAAAGCATACTTTATACAGTAGTGGTCAATAGGATATACTGGTTATAAAGTTGAATCTTGATCATTCGACCATTTTCGGGAGTCTGGAGCTCAGCTGTCTAGTTTCCGATCACTTTGAAATTTTTGGAGGGTATAACACATATCTAGATTGAATACTTCGAATTCCCAGGATTTTTCGAAACTTTCTAGTCTAGGTCTGTTTTACACTTTTGAAAATTTTCAAAAATTTGACAACCGAGCTTCAAACTCATATAAACGGCCTACAGTTCACTGAAAGTTTTGTTTTATATATCTTATTTATATTATGGACCGGTACTGCGAATATGTATAAATAAAACTTCAGTTTTGTTCACACATTTTCGTACAAATCCAACAAAGCTAGACGAACGATTTGAAATTGGCACCGTTCYCATTTCTGGGCTAATTTTGAAAATCTCGGTTTTTTTATCATCAATATAGAATACTTTCTCAGAATGTAATCTAAACTTTCCGAATCAATAAAAACCATTCCATAATACTTTTTTCAGGACTCCTGACTAAATTCTTCTCCGGTGATCTATATACAACATTTGCTCTAATAGAAGGCTGCCCAAAACGTCAATTTTGAGCTTAATCATTTCAATTCACGTGAAGGATATCAAACATTTGATAACTGATAATTTTTTATCATAATGTCACAAGCATTTTATTAATTGACAGATTTTCGATATCTCATGGAACCCGAGATGATTGAGCTAAAAAAGAAACTTGGTGCGGGATTCTATAAGAGCAAAACAGTAAATAAGTGGGAGCGTCCAATCAGAAAGAGCTTCCAAAAAATGAAATGTTTTTATTATCCATAAACTATTCAGTAGTATAAGAAATTTTTGATTTTAATTCAACATAATTACTATAAAATCTGCGAGTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTTCAGTTTTGTTCACACAT</pcr_primer_p1>
		<pcr_primer_p2>TTGTATATAGATCACCGGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>AAACTTCAGTTTTGTTCACACATTTTCGTACAAATCCAACAAAGCTAGACGAACGATTTGAAATTGGCACCGTTCTCATTTCTGGGCTAATTTTGAAAATCTCGGTTTTTTTATCATCAATATAGAATACTTTCTCAGAATGTAATCTAAACTTTCCGAATCAATAAAAACCATTCCATAATACTTTTTTCAGGACTCCTGACTAAATTCTTCTCCGGTGATCTATATACAA</canonical_amplicon>
		<polymorphic_amplicon>AAACTTCAGTTTTGTTCACACATTTTCGTACAAATCCAACAAAGCTAGACGAACGATTTGAAATTGGCACCGTTCYCATTTCTGGGCTAATTTTGAAAATCTCGGTTTTTTTATCATCAATATAGAATACTTTCTCAGAATGTAATCTAAACTTTCCGAATCAATAAAAACCATTCCATAATACTTTTTTCAGGACTCCTGACTAAATTCTTCTCCGGTGATCTATATACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20644</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1336982</contig_pos>
        <strand>+</strand>
        <context>CCTGAAAAAA[C/T]TTGGTATAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACTGACGAGTGAGATAGATCAATGCGTGGTTAGCAGGCGCCTGAAAAAA</left_flank>
        <right_flank>TTGGTATAGTTTTCTTTGTTTTCTTTTTTATTCTTACTTGAGCCATCATA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCTCACAAATGCGCATGCGCTGTTGATACAGTACTTCGGAAGTGGTTTACTTTGACCCTCTCTTGGCTGTTCTCCTTTTAAAAAAAAAATCAGCGGATTATTTATGAGAATTGGACGGAAATAAACAAAAAAGAGGAAGTTTGGGGCGAACGGGCAAAAATAAAATAACTCCGAAGTACTGTATTAAAGGCGCATAAATGTATTTGTAAAACCCGTAGCTCTTTTTGCTTCAGGACCAAAGATGCGCATTTGAATAAATATTCGGCTTAATGATTCATCGCTGCCGGCTAAGAATATACGTCTTACTGGCCGGTACTATATATAATAATTACCTTGCACAACACTCGTTTCTGTAGTTCATCCATAAATTCGACAAACTGCTCTCCAAACTCCACGGCTTTCTGTAAAACTTCATTCTTCTCCTGAGCACAGTATTTTGTGAGAGCGCACTGACGAGTGAGATAGATCAATGCGTGGTTAGCAGGCGCCTGAAAAAACTTGGTATAGTTTTCTTTGTTTTCTTTTTTATTCTTACTTGAGCCATCATAGTTTTCAATCGATTGATGTGCCGTTCAGCGACTTTCTCGATTACAGAACAATCCATAGCGCAAGACTTGACGAGCTCGTGAAACAGACGATCGATATTGTAGACGTTCATCGTTTTCACAAGCTAAAAACCTCATAATACCCACTGAGAAAACGATTGAGCAATACTTACAGCATACAAAAACTCTTCCTCAATCGTCTCCTTCAATGCCGTGCCAACCAATCCGATCTCCTCACGATCTTCCAGATGATGTTTTTTAATCATAAACTTCATCGCGTCTTTGCCACGCAGAAGGTTTCTATCGACGAGGTGTGTCAGTGCTACGAGCATCGAATGAAAGCAATAGTTTTTCGATGCGAACACGGTTTCCATGAGTTCCGGAAAATCGTGTACTTGTACTCTTTTAGCAAGCTGAAACAAAGATTTTGTTCTTTTAAAACCATATGAGAAG</canonical>
            <polymorphic>GTTCTCACAAATGCGCATGCGCTGTTGATACAGTACTTCGGAAGTGGTTTACTTTGACCCTCTCTTGGCTGTTCTCCTTTTAAAAAAAAAATCAGCGGATTATTTATGAGAATTGGACGGAAATAAACAAAAAAGAGGAAGTTTGGGGCGAACGGGCAAAAATAAAATAACTCCGAAGTACTGTATTAAAGGCGCATAAATGTATTTGTAAAACCCGTAGCTCTTTTTGCTTCAGGACCAAAGATGCGCATTTGAATAAATATTCGGCTTAATGATTCATCGCTGCCGGCTAAGAATATACGTCTTACTGGCCGGTACTATATATAATAATTACCTTGCACAACACTCGTTTCTGTAGTTCATCCATAAATTCGACAAACTGCTCTCCAAACTCCACGGCTTTCTGTAAAACTTCATTCTTCTCCTGAGCACAGTATTTTGTGAGAGCGCACTGACGAGTGAGATAGATCAATGCGTGGTTAGCAGGCGCCTGAAAAAAYTTGGTATAGTTTTCTTTGTTTTCTTTTTTATTCTTACTTGAGCCATCATAGTTTTCAATCGATTGATGTGCCGTTCAGCGACTTTCTCGATTACAGAACAATCCATAGCGCAAGACTTGACGAGCTCGTGAAACAGACGATCGATATTGTAGACGTTCATCGTTTTCACAAGCTAAAAACCTCATAATACCCACTGAGAAAACGATTGAGCAATACTTACAGCATACAAAAACTCTTCCTCAATCGTCTCCTTCAATGCCGTGCCAACCAATCCGATCTCCTCACGATCTTCCAGATGATGTTTTTTAATCATAAACTTCATCGCGTCTTTGCCACGCAGAAGGTTTCTATCGACGAGGTGTGTCAGTGCTACGAGCATCGAATGAAAGCAATAGTTTTTCGATGCGAACACGGTTTCCATGAGTTCCGGAAAATCGTGTACTTGTACTCTTTTAGCAAGCTGAAACAAAGATTTTGTTCTTTTAAAACCATATGAGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGTAAAACTTCATTCTTCTCC</pcr_primer_p1>
		<pcr_primer_p2>CTACAATATCGATCGTCTGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTGTAAAACTTCATTCTTCTCCTGAGCACAGTATTTTGTGAGAGCGCACTGACGAGTGAGATAGATCAATGCGTGGTTAGCAGGCGCCTGAAAAAACTTGGTATAGTTTTCTTTGTTTTCTTTTTTATTCTTACTTGAGCCATCATAGTTTTCAATCGATTGATGTGCCGTTCAGCGACTTTCTCGATTACAGAACAATCCATAGCGCAAGACTTGACGAGCTCGTGAAACAGACGATCGATATTGTAG</canonical_amplicon>
		<polymorphic_amplicon>TCTGTAAAACTTCATTCTTCTCCTGAGCACAGTATTTTGTGAGAGCGCACTGACGAGTGAGATAGATCAATGCGTGGTTAGCAGGCGCCTGAAAAAAYTTGGTATAGTTTTCTTTGTTTTCTTTTTTATTCTTACTTGAGCCATCATAGTTTTCAATCGATTGATGTGCCGTTCAGCGACTTTCTCGATTACAGAACAATCCATAGCGCAAGACTTGACGAGCTCGTGAAACAGACGATCGATATTGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20645</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1337014</contig_pos>
        <strand>+</strand>
        <context>TCTTTTTTAT[C/T]CTTACTTGRG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCAGGCGCCTGAAAAAACTTGGTATAGTTTTCTTTGTTTTCTTTTTTAT</left_flank>
        <right_flank>CTTACTTGAGCCATCATAGTTTTCAATCGATTGATGTGCCGTTCAGCGAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACTTCGGAAGTGGTTTACTTTGACCCTCTCTTGGCTGTTCTCCTTTTAAAAAAAAAATCAGCGGATTATTTATGAGAATTGGACGGAAATAAACAAAAAAGAGGAAGTTTGGGGCGAACGGGCAAAAATAAAATAACTCCGAAGTACTGTATTAAAGGCGCATAAATGTATTTGTAAAACCCGTAGCTCTTTTTGCTTCAGGACCAAAGATGCGCATTTGAATAAATATTCGGCTTAATGATTCATCGCTGCCGGCTAAGAATATACGTCTTACTGGCCGGTACTATATATAATAATTACCTTGCACAACACTCGTTTCTGTAGTTCATCCATAAATTCGACAAACTGCTCTCCAAACTCCACGGCTTTCTGTAAAACTTCATTCTTCTCCTGAGCACAGTATTTTGTGAGAGCGCACTGACGAGTGAGATAGATCAATGCGTGGTTAGCAGGCGCCTGAAAAAACTTGGTATAGTTTTCTTTGTTTTCTTTTTTATTCTTACTTGAGCCATCATAGTTTTCAATCGATTGATGTGCCGTTCAGCGACTTTCTCGATTACAGAACAATCCATAGCGCAAGACTTGACGAGCTCGTGAAACAGACGATCGATATTGTAGACGTTCATCGTTTTCACAAGCTAAAAACCTCATAATACCCACTGAGAAAACGATTGAGCAATACTTACAGCATACAAAAACTCTTCCTCAATCGTCTCCTTCAATGCCGTGCCAACCAATCCGATCTCCTCACGATCTTCCAGATGATGTTTTTTAATCATAAACTTCATCGCGTCTTTGCCACGCAGAAGGTTTCTATCGACGAGGTGTGTCAGTGCTACGAGCATCGAATGAAAGCAATAGTTTTTCGATGCGAACACGGTTTCCATGAGTTCCGGAAAATCGTGTACTTGTACTCTTTTAGCAAGCTGAAACAAAGATTTTGTTCTTTTAAAACCATATGAGAAGTAGTATCTCACCGTGTAGAAGGTGCTGTCGAC</canonical>
            <polymorphic>GTACTTCGGAAGTGGTTTACTTTGACCCTCTCTTGGCTGTTCTCCTTTTAAAAAAAAAATCAGCGGATTATTTATGAGAATTGGACGGAAATAAACAAAAAAGAGGAAGTTTGGGGCGAACGGGCAAAAATAAAATAACTCCGAAGTACTGTATTAAAGGCGCATAAATGTATTTGTAAAACCCGTAGCTCTTTTTGCTTCAGGACCAAAGATGCGCATTTGAATAAATATTCGGCTTAATGATTCATCGCTGCCGGCTAAGAATATACGTCTTACTGGCCGGTACTATATATAATAATTACCTTGCACAACACTCGTTTCTGTAGTTCATCCATAAATTCGACAAACTGCTCTCCAAACTCCACGGCTTTCTGTAAAACTTCATTCTTCTCCTGAGCACAGTATTTTGTGAGAGCGCACTGACGAGTGAGATAGATCAATGCGTGGTTAGCAGGCGCCTGAAAAAACTTGGTATAGTTTTCTTTGTTTTCTTTTTTATYCTTACTTGAGCCATCATAGTTTTCAATCGATTGATGTGCCGTTCAGCGACTTTCTCGATTACAGAACAATCCATAGCGCAAGACTTGACGAGCTCGTGAAACAGACGATCGATATTGTAGACGTTCATCGTTTTCACAAGCTAAAAACCTCATAATACCCACTGAGAAAACGATTGAGCAATACTTACAGCATACAAAAACTCTTCCTCAATCGTCTCCTTCAATGCCGTGCCAACCAATCCGATCTCCTCACGATCTTCCAGATGATGTTTTTTAATCATAAACTTCATCGCGTCTTTGCCACGCAGAAGGTTTCTATCGACGAGGTGTGTCAGTGCTACGAGCATCGAATGAAAGCAATAGTTTTTCGATGCGAACACGGTTTCCATGAGTTCCGGAAAATCGTGTACTTGTACTCTTTTAGCAAGCTGAAACAAAGATTTTGTTCTTTTAAAACCATATGAGAAGTAGTATCTCACCGTGTAGAAGGTGCTGTCGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGTAAAACTTCATTCTTCTCC</pcr_primer_p1>
		<pcr_primer_p2>CTACAATATCGATCGTCTGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTGTAAAACTTCATTCTTCTCCTGAGCACAGTATTTTGTGAGAGCGCACTGACGAGTGAGATAGATCAATGCGTGGTTAGCAGGCGCCTGAAAAAACTTGGTATAGTTTTCTTTGTTTTCTTTTTTATTCTTACTTGAGCCATCATAGTTTTCAATCGATTGATGTGCCGTTCAGCGACTTTCTCGATTACAGAACAATCCATAGCGCAAGACTTGACGAGCTCGTGAAACAGACGATCGATATTGTAG</canonical_amplicon>
		<polymorphic_amplicon>TCTGTAAAACTTCATTCTTCTCCTGAGCACAGTATTTTGTGAGAGCGCACTGACGAGTGAGATAGATCAATGCGTGGTTAGCAGGCGCCTGAAAAAACTTGGTATAGTTTTCTTTGTTTTCTTTTTTATYCTTACTTGAGCCATCATAGTTTTCAATCGATTGATGTGCCGTTCAGCGACTTTCTCGATTACAGAACAATCCATAGCGCAAGACTTGACGAGCTCGTGAAACAGACGATCGATATTGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20646</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1337023</contig_pos>
        <strand>+</strand>
        <context>TYCTTACTTG[A/G]GCCATCATAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGAAAAAACTTGGTATAGTTTTCTTTGTTTTCTTTTTTATTCTTACTTG</left_flank>
        <right_flank>GCCATCATAGTTTTCAATCGATTGATGTGCCGTTCAGCGACTTTCTCGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTGGTTTACTTTGACCCTCTCTTGGCTGTTCTCCTTTTAAAAAAAAAATCAGCGGATTATTTATGAGAATTGGACGGAAATAAACAAAAAAGAGGAAGTTTGGGGCGAACGGGCAAAAATAAAATAACTCCGAAGTACTGTATTAAAGGCGCATAAATGTATTTGTAAAACCCGTAGCTCTTTTTGCTTCAGGACCAAAGATGCGCATTTGAATAAATATTCGGCTTAATGATTCATCGCTGCCGGCTAAGAATATACGTCTTACTGGCCGGTACTATATATAATAATTACCTTGCACAACACTCGTTTCTGTAGTTCATCCATAAATTCGACAAACTGCTCTCCAAACTCCACGGCTTTCTGTAAAACTTCATTCTTCTCCTGAGCACAGTATTTTGTGAGAGCGCACTGACGAGTGAGATAGATCAATGCGTGGTTAGCAGGCGCCTGAAAAAACTTGGTATAGTTTTCTTTGTTTTCTTTTTTATTCTTACTTGAGCCATCATAGTTTTCAATCGATTGATGTGCCGTTCAGCGACTTTCTCGATTACAGAACAATCCATAGCGCAAGACTTGACGAGCTCGTGAAACAGACGATCGATATTGTAGACGTTCATCGTTTTCACAAGCTAAAAACCTCATAATACCCACTGAGAAAACGATTGAGCAATACTTACAGCATACAAAAACTCTTCCTCAATCGTCTCCTTCAATGCCGTGCCAACCAATCCGATCTCCTCACGATCTTCCAGATGATGTTTTTTAATCATAAACTTCATCGCGTCTTTGCCACGCAGAAGGTTTCTATCGACGAGGTGTGTCAGTGCTACGAGCATCGAATGAAAGCAATAGTTTTTCGATGCGAACACGGTTTCCATGAGTTCCGGAAAATCGTGTACTTGTACTCTTTTAGCAAGCTGAAACAAAGATTTTGTTCTTTTAAAACCATATGAGAAGTAGTATCTCACCGTGTAGAAGGTGCTGTCGACATTTCGCAG</canonical>
            <polymorphic>AAGTGGTTTACTTTGACCCTCTCTTGGCTGTTCTCCTTTTAAAAAAAAAATCAGCGGATTATTTATGAGAATTGGACGGAAATAAACAAAAAAGAGGAAGTTTGGGGCGAACGGGCAAAAATAAAATAACTCCGAAGTACTGTATTAAAGGCGCATAAATGTATTTGTAAAACCCGTAGCTCTTTTTGCTTCAGGACCAAAGATGCGCATTTGAATAAATATTCGGCTTAATGATTCATCGCTGCCGGCTAAGAATATACGTCTTACTGGCCGGTACTATATATAATAATTACCTTGCACAACACTCGTTTCTGTAGTTCATCCATAAATTCGACAAACTGCTCTCCAAACTCCACGGCTTTCTGTAAAACTTCATTCTTCTCCTGAGCACAGTATTTTGTGAGAGCGCACTGACGAGTGAGATAGATCAATGCGTGGTTAGCAGGCGCCTGAAAAAACTTGGTATAGTTTTCTTTGTTTTCTTTTTTATTCTTACTTGRGCCATCATAGTTTTCAATCGATTGATGTGCCGTTCAGCGACTTTCTCGATTACAGAACAATCCATAGCGCAAGACTTGACGAGCTCGTGAAACAGACGATCGATATTGTAGACGTTCATCGTTTTCACAAGCTAAAAACCTCATAATACCCACTGAGAAAACGATTGAGCAATACTTACAGCATACAAAAACTCTTCCTCAATCGTCTCCTTCAATGCCGTGCCAACCAATCCGATCTCCTCACGATCTTCCAGATGATGTTTTTTAATCATAAACTTCATCGCGTCTTTGCCACGCAGAAGGTTTCTATCGACGAGGTGTGTCAGTGCTACGAGCATCGAATGAAAGCAATAGTTTTTCGATGCGAACACGGTTTCCATGAGTTCCGGAAAATCGTGTACTTGTACTCTTTTAGCAAGCTGAAACAAAGATTTTGTTCTTTTAAAACCATATGAGAAGTAGTATCTCACCGTGTAGAAGGTGCTGTCGACATTTCGCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>288 152 143 88 82 81 48 47 27 22 22</canonical_bands>
                <polymorphic_bands>288 225 152 88 81 48 47 27 22 22</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGTAAAACTTCATTCTTCTCC</pcr_primer_p1>
		<pcr_primer_p2>CTACAATATCGATCGTCTGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTGTAAAACTTCATTCTTCTCCTGAGCACAGTATTTTGTGAGAGCGCACTGACGAGTGAGATAGATCAATGCGTGGTTAGCAGGCGCCTGAAAAAACTTGGTATAGTTTTCTTTGTTTTCTTTTTTATTCTTACTTGAGCCATCATAGTTTTCAATCGATTGATGTGCCGTTCAGCGACTTTCTCGATTACAGAACAATCCATAGCGCAAGACTTGACGAGCTCGTGAAACAGACGATCGATATTGTAG</canonical_amplicon>
		<polymorphic_amplicon>TCTGTAAAACTTCATTCTTCTCCTGAGCACAGTATTTTGTGAGAGCGCACTGACGAGTGAGATAGATCAATGCGTGGTTAGCAGGCGCCTGAAAAAACTTGGTATAGTTTTCTTTGTTTTCTTTTTTATTCTTACTTGRGCCATCATAGTTTTCAATCGATTGATGTGCCGTTCAGCGACTTTCTCGATTACAGAACAATCCATAGCGCAAGACTTGACGAGCTCGTGAAACAGACGATCGATATTGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20647</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1337246</contig_pos>
        <strand>+</strand>
        <context>CAATGCCGTG[C/T]CAACCAATCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACTTACAGCATACAAAAACTCTTCCTCAATCGTCTCCTTCAATGCCGTG</left_flank>
        <right_flank>CAACCAATCCGATCTCCTCACGATCTTCCAGATGATGTTTTTTAATCATA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGCTTAATGATTCATCGCTGCCGGCTAAGAATATACGTCTTACTGGCCGGTACTATATATAATAATTACCTTGCACAACACTCGTTTCTGTAGTTCATCCATAAATTCGACAAACTGCTCTCCAAACTCCACGGCTTTCTGTAAAACTTCATTCTTCTCCTGAGCACAGTATTTTGTGAGAGCGCACTGACGAGTGAGATAGATCAATGCGTGGTTAGCAGGCGCCTGAAAAAACTTGGTATAGTTTTCTTTGTTTTCTTTTTTATTCTTACTTGAGCCATCATAGTTTTCAATCGATTGATGTGCCGTTCAGCGACTTTCTCGATTACAGAACAATCCATAGCGCAAGACTTGACGAGCTCGTGAAACAGACGATCGATATTGTAGACGTTCATCGTTTTCACAAGCTAAAAACCTCATAATACCCACTGAGAAAACGATTGAGCAATACTTACAGCATACAAAAACTCTTCCTCAATCGTCTCCTTCAATGCCGTGCCAACCAATCCGATCTCCTCACGATCTTCCAGATGATGTTTTTTAATCATAAACTTCATCGCGTCTTTGCCACGCAGAAGGTTTCTATCGACGAGGTGTGTCAGTGCTACGAGCATCGAATGAAAGCAATAGTTTTTCGATGCGAACACGGTTTCCATGAGTTCCGGAAAATCGTGTACTTGTACTCTTTTAGCAAGCTGAAACAAAGATTTTGTTCTTTTAAAACCATATGAGAAGTAGTATCTCACCGTGTAGAAGGTGCTGTCGACATTTCGCAGTTGCTCATCACTCCAATCTGGTTTCACGTACTTCTCTAAATATCTCAGAATATCGATTCGTTGCCGGTCAGTGATGTAAGGATCAAGTTGATTGTGAACGCATGCTGAAAGAAATCATTCATCATCTATAAAAAATCACGAATGCTTACAGTGCGCCAGAGGCAAAATCATGGCTCCAAGAGTTCTCTTCGCTTCGGAATACGAATATGGATTCTCATCGGTG</canonical>
            <polymorphic>CGGCTTAATGATTCATCGCTGCCGGCTAAGAATATACGTCTTACTGGCCGGTACTATATATAATAATTACCTTGCACAACACTCGTTTCTGTAGTTCATCCATAAATTCGACAAACTGCTCTCCAAACTCCACGGCTTTCTGTAAAACTTCATTCTTCTCCTGAGCACAGTATTTTGTGAGAGCGCACTGACGAGTGAGATAGATCAATGCGTGGTTAGCAGGCGCCTGAAAAAACTTGGTATAGTTTTCTTTGTTTTCTTTTTTATTCTTACTTGAGCCATCATAGTTTTCAATCGATTGATGTGCCGTTCAGCGACTTTCTCGATTACAGAACAATCCATAGCGCAAGACTTGACGAGCTCGTGAAACAGACGATCGATATTGTAGACGTTCATCGTTTTCACAAGCTAAAAACCTCATAATACCCACTGAGAAAACGATTGAGCAATACTTACAGCATACAAAAACTCTTCCTCAATCGTCTCCTTCAATGCCGTGYCAACCAATCCGATCTCCTCACGATCTTCCAGATGATGTTTTTTAATCATAAACTTCATCGCGTCTTTGCCACGCAGAAGGTTTCTATCGACGAGGTGTGTCAGTGCTACGAGCATCGAATGAAAGCAATAGTTTTTCGATGCGAACACGGTTTCCATGAGTTCCGGAAAATCGTGTACTTGTACTCTTTTAGCAAGCTGAAACAAAGATTTTGTTCTTTTAAAACCATATGAGAAGTAGTATCTCACCGTGTAGAAGGTGCTGTCGACATTTCGCAGTTGCTCATCACTCCAATCTGGTTTCACGTACTTCTCTAAATATCTCAGAATATCGATTCGTTGCCGGTCAGTGATGTAAGGATCAAGTTGATTGTGAACGCATGCTGAAAGAAATCATTCATCATCTATAAAAAATCACGAATGCTTACAGTGCGCCAGAGGCAAAATCATGGCTCCAAGAGTTCTCTTCGCTTCGGAATACGAATATGGATTCTCATCGGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGCAATACTTACAGCATACA</pcr_primer_p1>
		<pcr_primer_p2>AAAAGAGTACAAGTACACGATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGAGCAATACTTACAGCATACAAAAACTCTTCCTCAATCGTCTCCTTCAATGCCGTGCCAACCAATCCGATCTCCTCACGATCTTCCAGATGATGTTTTTTAATCATAAACTTCATCGCGTCTTTGCCACGCAGAAGGTTTCTATCGACGAGGTGTGTCAGTGCTACGAGCATCGAATGAAAGCAATAGTTTTTCGATGCGAACACGGTTTCCATGAGTTCCGGAAAATCGTGTACTTGTACTCTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGAGCAATACTTACAGCATACAAAAACTCTTCCTCAATCGTCTCCTTCAATGCCGTGYCAACCAATCCGATCTCCTCACGATCTTCCAGATGATGTTTTTTAATCATAAACTTCATCGCGTCTTTGCCACGCAGAAGGTTTCTATCGACGAGGTGTGTCAGTGCTACGAGCATCGAATGAAAGCAATAGTTTTTCGATGCGAACACGGTTTCCATGAGTTCCGGAAAATCGTGTACTTGTACTCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20648</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1337380</contig_pos>
        <strand>+</strand>
        <context>AGCAATAGTT[C/T]TTCGATGCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTATCGACGAGGTGTGTCAGTGCTACGAGCATCGAATGAAAGCAATAGTT</left_flank>
        <right_flank>TTCGATGCGAACACGGTTTCCATGAGTTCCGGAAAATCGTGTACTTGTAC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTTCTGTAAAACTTCATTCTTCTCCTGAGCACAGTATTTTGTGAGAGCGCACTGACGAGTGAGATAGATCAATGCGTGGTTAGCAGGCGCCTGAAAAAACTTGGTATAGTTTTCTTTGTTTTCTTTTTTATTCTTACTTGAGCCATCATAGTTTTCAATCGATTGATGTGCCGTTCAGCGACTTTCTCGATTACAGAACAATCCATAGCGCAAGACTTGACGAGCTCGTGAAACAGACGATCGATATTGTAGACGTTCATCGTTTTCACAAGCTAAAAACCTCATAATACCCACTGAGAAAACGATTGAGCAATACTTACAGCATACAAAAACTCTTCCTCAATCGTCTCCTTCAATGCCGTGCCAACCAATCCGATCTCCTCACGATCTTCCAGATGATGTTTTTTAATCATAAACTTCATCGCGTCTTTGCCACGCAGAAGGTTTCTATCGACGAGGTGTGTCAGTGCTACGAGCATCGAATGAAAGCAATAGTTTTTCGATGCGAACACGGTTTCCATGAGTTCCGGAAAATCGTGTACTTGTACTCTTTTAGCAAGCTGAAACAAAGATTTTGTTCTTTTAAAACCATATGAGAAGTAGTATCTCACCGTGTAGAAGGTGCTGTCGACATTTCGCAGTTGCTCATCACTCCAATCTGGTTTCACGTACTTCTCTAAATATCTCAGAATATCGATTCGTTGCCGGTCAGTGATGTAAGGATCAAGTTGATTGTGAACGCATGCTGAAAGAAATCATTCATCATCTATAAAAAATCACGAATGCTTACAGTGCGCCAGAGGCAAAATCATGGCTCCAAGAGTTCTCTTCGCTTCGGAATACGAATATGGATTCTCATCGGTGATGGCTGATGTGATAGTGAGAACACACTTAGCATGAAGTTTTTTCTGCTGTTTGATCCAGTCTGGGATGTGGGCCAGGATATTCACACGTTCCTGTCTGTACATATCAATGGGGATGAAGGCGCCGATTTTGTG</canonical>
            <polymorphic>GCTTTCTGTAAAACTTCATTCTTCTCCTGAGCACAGTATTTTGTGAGAGCGCACTGACGAGTGAGATAGATCAATGCGTGGTTAGCAGGCGCCTGAAAAAACTTGGTATAGTTTTCTTTGTTTTCTTTTTTATTCTTACTTGAGCCATCATAGTTTTCAATCGATTGATGTGCCGTTCAGCGACTTTCTCGATTACAGAACAATCCATAGCGCAAGACTTGACGAGCTCGTGAAACAGACGATCGATATTGTAGACGTTCATCGTTTTCACAAGCTAAAAACCTCATAATACCCACTGAGAAAACGATTGAGCAATACTTACAGCATACAAAAACTCTTCCTCAATCGTCTCCTTCAATGCCGTGCCAACCAATCCGATCTCCTCACGATCTTCCAGATGATGTTTTTTAATCATAAACTTCATCGCGTCTTTGCCACGCAGAAGGTTTCTATCGACGAGGTGTGTCAGTGCTACGAGCATCGAATGAAAGCAATAGTTYTTCGATGCGAACACGGTTTCCATGAGTTCCGGAAAATCGTGTACTTGTACTCTTTTAGCAAGCTGAAACAAAGATTTTGTTCTTTTAAAACCATATGAGAAGTAGTATCTCACCGTGTAGAAGGTGCTGTCGACATTTCGCAGTTGCTCATCACTCCAATCTGGTTTCACGTACTTCTCTAAATATCTCAGAATATCGATTCGTTGCCGGTCAGTGATGTAAGGATCAAGTTGATTGTGAACGCATGCTGAAAGAAATCATTCATCATCTATAAAAAATCACGAATGCTTACAGTGCGCCAGAGGCAAAATCATGGCTCCAAGAGTTCTCTTCGCTTCGGAATACGAATATGGATTCTCATCGGTGATGGCTGATGTGATAGTGAGAACACACTTAGCATGAAGTTTTTTCTGCTGTTTGATCCAGTCTGGGATGTGGGCCAGGATATTCACACGTTCCTGTCTGTACATATCAATGGGGATGAAGGCGCCGATTTTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGCAATACTTACAGCATACA</pcr_primer_p1>
		<pcr_primer_p2>AAAAGAGTACAAGTACACGATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGAGCAATACTTACAGCATACAAAAACTCTTCCTCAATCGTCTCCTTCAATGCCGTGCCAACCAATCCGATCTCCTCACGATCTTCCAGATGATGTTTTTTAATCATAAACTTCATCGCGTCTTTGCCACGCAGAAGGTTTCTATCGACGAGGTGTGTCAGTGCTACGAGCATCGAATGAAAGCAATAGTTTTTCGATGCGAACACGGTTTCCATGAGTTCCGGAAAATCGTGTACTTGTACTCTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGAGCAATACTTACAGCATACAAAAACTCTTCCTCAATCGTCTCCTTCAATGCCGTGCCAACCAATCCGATCTCCTCACGATCTTCCAGATGATGTTTTTTAATCATAAACTTCATCGCGTCTTTGCCACGCAGAAGGTTTCTATCGACGAGGTGTGTCAGTGCTACGAGCATCGAATGAAAGCAATAGTTYTTCGATGCGAACACGGTTTCCATGAGTTCCGGAAAATCGTGTACTTGTACTCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20649</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1339479</contig_pos>
        <strand>+</strand>
        <context>ACACTATTTG[C/T]CGACTGTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATAGACACTTCTTGTGTCTTCCCACTCTCTCCGGTCACCACACTATTTG</left_flank>
        <right_flank>CGACTGTCTTTGCGAAGGTCTCGCGAGCGCACCACAGTCGATGACACACC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGTTTCCGCCACGACAACTAAAATTTACTTTCTATCCAGATAACTTTTAGGCCAGTCGAAAGTTATTTTTCGAATTGTAGGTAGAGAACACATGTGTTTTGAGTCAACGCGCGCGAGAACCTATCTACGAGGAGTTCGTTGGGGCGCAATTGCTGACAATGGGCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGATGCTAACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACATACCGTTTCCGACCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAGAAATGAGAAAATACGAAATGAAACGTTGAGAACCAACAGGTTGATAACATGGACGTAGTCTTCCAATGGCAAAAATAAGAGTCAATGAGGAGGGCAGCAAGAACAGCTCTCTGTTCTCCGTCGTCCATGTATTGGTGTCCACAACATAGACACTTCTTGTGTCTTCCCACTCTCTCCGGTCACCACACTATTTGTCGACTGTCTTTGCGAAGGTCTCGCGAGCGCACCACAGTCGATGACACACCCTGCGCTGGTCAGTTTGATGTCTGTGCCCTCCGAGGCCGCACATGCTATTAACTAAGGGTCCTGTCGATCTGCGCACTCGTTTGGGCCAAGGCCAGCACGCAGCCCATCCTACTTCGTCGAACCTGCATTCTAAAGGAGAGGAGAGAGAAGAAAAAAAGCGTTGACACAAGAAGAAAGAGAGAAGAAAGAGGAGGCAGTGTTTGGGACGTTGTTACTACTACGATGGGAAGACGAGTATAACACAAAGGACTAGGAAGAAGAAAAAATGTGCGGTGGTGAGTGGTTGAATACATATATATCTCAATTTCATTCACAAACACAATCGTATTCCAGAAAGAATGAACAAGTTCTGCGACTTCATCGATGATAGGATTGACGATGGGACGTTTACTCCAATGGTCAATGCGGCCAACTCGTCAATGCGGCAGATTGGTAAAGTGAGGCTTTTA</canonical>
            <polymorphic>AAAGTTTCCGCCACGACAACTAAAATTTACTTTCTATCCAGATAACTTTTAGGCCAGTCGAAAGTTATTTTTCGAATTGTAGGTAGAGAACACATGTGTTTTGAGTCAACGCGCGCGAGAACCTATCTACGAGGAGTTCGTTGGGGCGCAATTGCTGACAATGGGCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGATGCTAACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACATACCGTTTCCGACCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAGAAATGAGAAAATACGAAATGAAACGTTGAGAACCAACAGGTTGATAACATGGACGTAGTCTTCCAATGGCAAAAATAAGAGTCAATGAGGAGGGCAGCAAGAACAGCTCTCTGTTCTCCGTCGTCCATGTATTGGTGTCCACAACATAGACACTTCTTGTGTCTTCCCACTCTCTCCGGTCACCACACTATTTGYCGACTGTCTTTGCGAAGGTCTCGCGAGCGCACCACAGTCGATGACACACCCTGCGCTGGTCAGTTTGATGTCTGTGCCCTCCGAGGCCGCACATGCTATTAACTAAGGGTCCTGTCGATCTGCGCACTCGTTTGGGCCAAGGCCAGCACGCAGCCCATCCTACTTCGTCGAACCTGCATTCTAAAGGAGAGGAGAGAGAAGAAAAAAAGCGTTGACACAAGAAGAAAGAGAGAAGAAAGAGGAGGCAGTGTTTGGGACGTTGTTACTACTACGATGGGAAGACGAGTATAACACAAAGGACTAGGAAGAAGAAAAAATGTGCGGTGGTGAGTGGTTGAATACATATATATCTCAATTTCATTCACAAACACAATCGTATTCCAGAAAGAATGAACAAGTTCTGCGACTTCATCGATGATAGGATTGACGATGGGACGTTTACTCCAATGGTCAATGCGGCCAACTCGTCAATGCGGCAGATTGGTAAAGTGAGGCTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>428 244 87 77 59 53 38 14</canonical_bands>
                <polymorphic_bands>466 244 87 77 59 53 14</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>394 287 212 107</canonical_bands>
                <polymorphic_bands>606 287 107</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>337 226 212 107 61 57</canonical_bands>
                <polymorphic_bands>337 269 226 107 61</polymorphic_bands>
            </assay>
            <assay>
                <site>GTCGAC</site>
                <isoschizomers>
                    <enzyme>SalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAATAAGAGTCAATGAGGAG</pcr_primer_p1>
		<pcr_primer_p2>AGGACCCTTAGTTAATAGCATGT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATAAGAGTCAATGAGGAGGGCAGCAAGAACAGCTCTCTGTTCTCCGTCGTCCATGTATTGGTGTCCACAACATAGACACTTCTTGTGTCTTCCCACTCTCTCCGGTCACCACACTATTTGTCGACTGTCTTTGCGAAGGTCTCGCGAGCGCACCACAGTCGATGACACACCCTGCGCTGGTCAGTTTGATGTCTGTGCCCTCCGAGGCCGCACATGCTATTAACTAAGGGTCCT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAATAAGAGTCAATGAGGAGGGCAGCAAGAACAGCTCTCTGTTCTCCGTCGTCCATGTATTGGTGTCCACAACATAGACACTTCTTGTGTCTTCCCACTCTCTCCGGTCACCACACTATTTGYCGACTGTCTTTGCGAAGGTCTCGCGAGCGCACCACAGTCGATGACACACCCTGCGCTGGTCAGTTTGATGTCTGTGCCCTCCGAGGCCGCACATGCTATTAACTAAGGGTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20650</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1339234</contig_pos>
        <strand>+</strand>
        <context>CTGAGAAACA[C/T]ACCGTTTYCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACTGATGCTAACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACA</left_flank>
        <right_flank>ACCGTTTCCGACCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATTACTGTATTTTTCAAACAGTTTTCTCTGAGCCGCAAGTTGCCTAGACAGTCATGCCTGACTATTTCCAAAATCTCCGACTATTTTCACGCTAACCTGATCGTTACGTTTCAGTGTAGTCAAAAATTTGGGGCCGTGGAAGAGAAACGCCAGTGCTCACAGCCTAAGATCCCAAAACAAAAACTACCGTATGCAAAGGAATTCGAAAATGGAATAAATTAGGCTACGGTAGTTTTCGTGCTGAAAGTTTCCGCCACGACAACTAAAATTTACTTTCTATCCAGATAACTTTTAGGCCAGTCGAAAGTTATTTTTCGAATTGTAGGTAGAGAACACATGTGTTTTGAGTCAACGCGCGCGAGAACCTATCTACGAGGAGTTCGTTGGGGCGCAATTGCTGACAATGGGCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGATGCTAACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACATACCGTTTCCGACCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAGAAATGAGAAAATACGAAATGAAACGTTGAGAACCAACAGGTTGATAACATGGACGTAGTCTTCCAATGGCAAAAATAAGAGTCAATGAGGAGGGCAGCAAGAACAGCTCTCTGTTCTCCGTCGTCCATGTATTGGTGTCCACAACATAGACACTTCTTGTGTCTTCCCACTCTCTCCGGTCACCACACTATTTGTCGACTGTCTTTGCGAAGGTCTCGCGAGCGCACCACAGTCGATGACACACCCTGCGCTGGTCAGTTTGATGTCTGTGCCCTCCGAGGCCGCACATGCTATTAACTAAGGGTCCTGTCGATCTGCGCACTCGTTTGGGCCAAGGCCAGCACGCAGCCCATCCTACTTCGTCGAACCTGCATTCTAAAGGAGAGGAGAGAGAAGAAAAAAAGCGTTGACACAAGAAGAAAGAGAGAAGAAAGAGGAGGCAGTGTTTGG</canonical>
            <polymorphic>CGATTACTGTATTTTTCAAACAGTTTTCTCTGAGCCGCAAGTTGCCTAGACAGTCATGCCTGACTATTTCCAAAATCTCCGACTATTTTCACGCTAACCTGATCGTTACGTTTCAGTGTAGTCAAAAATTTGGGGCCGTGGAAGAGAAACGCCAGTGCTCACAGCCTAAGATCCCAAAACAAAAACTACCGTATGCAAAGGAATTCGAAAATGGAATAAATTAGGCTACGGTAGTTTTCGTGCTGAAAGTTTCCGCCACGACAACTAAAATTTACTTTCTATCCAGATAACTTTTAGGCCAGTCGAAAGTTATTTTTCGAATTGTAGGTAGAGAACACATGTGTTTTGAGTCAACGCGCGCGAGAACCTATCTACGAGGAGTTCGTTGGGGCGCAATTGCTGACAATGGGCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGATGCTAACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACAYACCGTTTCCGACCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAGAAATGAGAAAATACGAAATGAAACGTTGAGAACCAACAGGTTGATAACATGGACGTAGTCTTCCAATGGCAAAAATAAGAGTCAATGAGGAGGGCAGCAAGAACAGCTCTCTGTTCTCCGTCGTCCATGTATTGGTGTCCACAACATAGACACTTCTTGTGTCTTCCCACTCTCTCCGGTCACCACACTATTTGTCGACTGTCTTTGCGAAGGTCTCGCGAGCGCACCACAGTCGATGACACACCCTGCGCTGGTCAGTTTGATGTCTGTGCCCTCCGAGGCCGCACATGCTATTAACTAAGGGTCCTGTCGATCTGCGCACTCGTTTGGGCCAAGGCCAGCACGCAGCCCATCCTACTTCGTCGAACCTGCATTCTAAAGGAGAGGAGAGAGAAGAAAAAAAGCGTTGACACAAGAAGAAAGAGAGAAGAAAGAGGAGGCAGTGTTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATTGTAGGTAGAGAACACAT</pcr_primer_p1>
		<pcr_primer_p2>TCGTATTTTCTCATTTCTATTGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGAATTGTAGGTAGAGAACACATGTGTTTTGAGTCAACGCGCGCGAGAACCTATCTACGAGGAGTTCGTTGGGGCGCAATTGCTGACAATGGGCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGATGCTAACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACATACCGTTTCCGACCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAGAAATGAGAAAATACGA</canonical_amplicon>
		<polymorphic_amplicon>CGAATTGTAGGTAGAGAACACATGTGTTTTGAGTCAACGCGCGCGAGAACCTATCTACGAGGAGTTCGTTGGGGCGCAATTGCTGACAATGGGCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGATGCTAACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACAYACCGTTTCCGACCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAGAAATGAGAAAATACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20651</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1339218</contig_pos>
        <strand>+</strand>
        <context>TCAAAAAGTA[G/T]TTCCTCTGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATCGGAGATTCATTGATACTGATGCTAACCTTGAAATTTATCAAAAAGTA</left_flank>
        <right_flank>TTCCTCTGAGAAACATACCGTTTCCGACCTTTTCAGTTGATAGAAAAGAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGCAACTGTAGCTCGATTACTGTATTTTTCAAACAGTTTTCTCTGAGCCGCAAGTTGCCTAGACAGTCATGCCTGACTATTTCCAAAATCTCCGACTATTTTCACGCTAACCTGATCGTTACGTTTCAGTGTAGTCAAAAATTTGGGGCCGTGGAAGAGAAACGCCAGTGCTCACAGCCTAAGATCCCAAAACAAAAACTACCGTATGCAAAGGAATTCGAAAATGGAATAAATTAGGCTACGGTAGTTTTCGTGCTGAAAGTTTCCGCCACGACAACTAAAATTTACTTTCTATCCAGATAACTTTTAGGCCAGTCGAAAGTTATTTTTCGAATTGTAGGTAGAGAACACATGTGTTTTGAGTCAACGCGCGCGAGAACCTATCTACGAGGAGTTCGTTGGGGCGCAATTGCTGACAATGGGCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGATGCTAACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACATACCGTTTCCGACCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAGAAATGAGAAAATACGAAATGAAACGTTGAGAACCAACAGGTTGATAACATGGACGTAGTCTTCCAATGGCAAAAATAAGAGTCAATGAGGAGGGCAGCAAGAACAGCTCTCTGTTCTCCGTCGTCCATGTATTGGTGTCCACAACATAGACACTTCTTGTGTCTTCCCACTCTCTCCGGTCACCACACTATTTGTCGACTGTCTTTGCGAAGGTCTCGCGAGCGCACCACAGTCGATGACACACCCTGCGCTGGTCAGTTTGATGTCTGTGCCCTCCGAGGCCGCACATGCTATTAACTAAGGGTCCTGTCGATCTGCGCACTCGTTTGGGCCAAGGCCAGCACGCAGCCCATCCTACTTCGTCGAACCTGCATTCTAAAGGAGAGGAGAGAGAAGAAAAAAAGCGTTGACACAAGAAGAAAGAGAGAAGAAAG</canonical>
            <polymorphic>AAATGCAACTGTAGCTCGATTACTGTATTTTTCAAACAGTTTTCTCTGAGCCGCAAGTTGCCTAGACAGTCATGCCTGACTATTTCCAAAATCTCCGACTATTTTCACGCTAACCTGATCGTTACGTTTCAGTGTAGTCAAAAATTTGGGGCCGTGGAAGAGAAACGCCAGTGCTCACAGCCTAAGATCCCAAAACAAAAACTACCGTATGCAAAGGAATTCGAAAATGGAATAAATTAGGCTACGGTAGTTTTCGTGCTGAAAGTTTCCGCCACGACAACTAAAATTTACTTTCTATCCAGATAACTTTTAGGCCAGTCGAAAGTTATTTTTCGAATTGTAGGTAGAGAACACATGTGTTTTGAGTCAACGCGCGCGAGAACCTATCTACGAGGAGTTCGTTGGGGCGCAATTGCTGACAATGGGCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGATGCTAACCTTGAAATTTATCAAAAAGTAKTTCCTCTGAGAAACATACCGTTTCCGACCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAGAAATGAGAAAATACGAAATGAAACGTTGAGAACCAACAGGTTGATAACATGGACGTAGTCTTCCAATGGCAAAAATAAGAGTCAATGAGGAGGGCAGCAAGAACAGCTCTCTGTTCTCCGTCGTCCATGTATTGGTGTCCACAACATAGACACTTCTTGTGTCTTCCCACTCTCTCCGGTCACCACACTATTTGTCGACTGTCTTTGCGAAGGTCTCGCGAGCGCACCACAGTCGATGACACACCCTGCGCTGGTCAGTTTGATGTCTGTGCCCTCCGAGGCCGCACATGCTATTAACTAAGGGTCCTGTCGATCTGCGCACTCGTTTGGGCCAAGGCCAGCACGCAGCCCATCCTACTTCGTCGAACCTGCATTCTAAAGGAGAGGAGAGAGAAGAAAAAAAGCGTTGACACAAGAAGAAAGAGAGAAGAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATTGTAGGTAGAGAACACAT</pcr_primer_p1>
		<pcr_primer_p2>TCGTATTTTCTCATTTCTATTGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGAATTGTAGGTAGAGAACACATGTGTTTTGAGTCAACGCGCGCGAGAACCTATCTACGAGGAGTTCGTTGGGGCGCAATTGCTGACAATGGGCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGATGCTAACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACATACCGTTTCCGACCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAGAAATGAGAAAATACGA</canonical_amplicon>
		<polymorphic_amplicon>CGAATTGTAGGTAGAGAACACATGTGTTTTGAGTCAACGCGCGCGAGAACCTATCTACGAGGAGTTCGTTGGGGCGCAATTGCTGACAATGGGCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGATGCTAACCTTGAAATTTATCAAAAAGTAKTTCCTCTGAGAAACATACCGTTTCCGACCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAGAAATGAGAAAATACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20652</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1339192</contig_pos>
        <strand>+</strand>
        <context>GATACTGAYG[C/G]TWACCTTGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGGCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGATG</left_flank>
        <right_flank>TAACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACATACCGTTTC</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAAAACTACTAAGTGATGAACTTCAAAATGCAACTGTAGCTCGATTACTGTATTTTTCAAACAGTTTTCTCTGAGCCGCAAGTTGCCTAGACAGTCATGCCTGACTATTTCCAAAATCTCCGACTATTTTCACGCTAACCTGATCGTTACGTTTCAGTGTAGTCAAAAATTTGGGGCCGTGGAAGAGAAACGCCAGTGCTCACAGCCTAAGATCCCAAAACAAAAACTACCGTATGCAAAGGAATTCGAAAATGGAATAAATTAGGCTACGGTAGTTTTCGTGCTGAAAGTTTCCGCCACGACAACTAAAATTTACTTTCTATCCAGATAACTTTTAGGCCAGTCGAAAGTTATTTTTCGAATTGTAGGTAGAGAACACATGTGTTTTGAGTCAACGCGCGCGAGAACCTATCTACGAGGAGTTCGTTGGGGCGCAATTGCTGACAATGGGCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGATGCTAACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACATACCGTTTCCGACCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAGAAATGAGAAAATACGAAATGAAACGTTGAGAACCAACAGGTTGATAACATGGACGTAGTCTTCCAATGGCAAAAATAAGAGTCAATGAGGAGGGCAGCAAGAACAGCTCTCTGTTCTCCGTCGTCCATGTATTGGTGTCCACAACATAGACACTTCTTGTGTCTTCCCACTCTCTCCGGTCACCACACTATTTGTCGACTGTCTTTGCGAAGGTCTCGCGAGCGCACCACAGTCGATGACACACCCTGCGCTGGTCAGTTTGATGTCTGTGCCCTCCGAGGCCGCACATGCTATTAACTAAGGGTCCTGTCGATCTGCGCACTCGTTTGGGCCAAGGCCAGCACGCAGCCCATCCTACTTCGTCGAACCTGCATTCTAAAGGAGAGGAGAGAGAAGAAAAAAAGCGTT</canonical>
            <polymorphic>CTAAAACTACTAAGTGATGAACTTCAAAATGCAACTGTAGCTCGATTACTGTATTTTTCAAACAGTTTTCTCTGAGCCGCAAGTTGCCTAGACAGTCATGCCTGACTATTTCCAAAATCTCCGACTATTTTCACGCTAACCTGATCGTTACGTTTCAGTGTAGTCAAAAATTTGGGGCCGTGGAAGAGAAACGCCAGTGCTCACAGCCTAAGATCCCAAAACAAAAACTACCGTATGCAAAGGAATTCGAAAATGGAATAAATTAGGCTACGGTAGTTTTCGTGCTGAAAGTTTCCGCCACGACAACTAAAATTTACTTTCTATCCAGATAACTTTTAGGCCAGTCGAAAGTTATTTTTCGAATTGTAGGTAGAGAACACATGTGTTTTGAGTCAACGCGCGCGAGAACCTATCTACGAGGAGTTCGTTGGGGCGCAATTGCTGACAATGGGCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGATGSTAACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACATACCGTTTCCGACCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAGAAATGAGAAAATACGAAATGAAACGTTGAGAACCAACAGGTTGATAACATGGACGTAGTCTTCCAATGGCAAAAATAAGAGTCAATGAGGAGGGCAGCAAGAACAGCTCTCTGTTCTCCGTCGTCCATGTATTGGTGTCCACAACATAGACACTTCTTGTGTCTTCCCACTCTCTCCGGTCACCACACTATTTGTCGACTGTCTTTGCGAAGGTCTCGCGAGCGCACCACAGTCGATGACACACCCTGCGCTGGTCAGTTTGATGTCTGTGCCCTCCGAGGCCGCACATGCTATTAACTAAGGGTCCTGTCGATCTGCGCACTCGTTTGGGCCAAGGCCAGCACGCAGCCCATCCTACTTCGTCGAACCTGCATTCTAAAGGAGAGGAGAGAGAAGAAAAAAAGCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATTGTAGGTAGAGAACACAT</pcr_primer_p1>
		<pcr_primer_p2>TCGTATTTTCTCATTTCTATTGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGAATTGTAGGTAGAGAACACATGTGTTTTGAGTCAACGCGCGCGAGAACCTATCTACGAGGAGTTCGTTGGGGCGCAATTGCTGACAATGGGCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGATGCTAACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACATACCGTTTCCGACCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAGAAATGAGAAAATACGA</canonical_amplicon>
		<polymorphic_amplicon>CGAATTGTAGGTAGAGAACACATGTGTTTTGAGTCAACGCGCGCGAGAACCTATCTACGAGGAGTTCGTTGGGGCGCAATTGCTGACAATGGGCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGATGSTAACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACATACCGTTTCCGACCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAGAAATGAGAAAATACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20653</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1339190</contig_pos>
        <strand>+</strand>
        <context>TTGATACTGA[C/T]GSTWACCTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGGGCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGA</left_flank>
        <right_flank>GCTAACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACATACCGTT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTAAAACTACTAAGTGATGAACTTCAAAATGCAACTGTAGCTCGATTACTGTATTTTTCAAACAGTTTTCTCTGAGCCGCAAGTTGCCTAGACAGTCATGCCTGACTATTTCCAAAATCTCCGACTATTTTCACGCTAACCTGATCGTTACGTTTCAGTGTAGTCAAAAATTTGGGGCCGTGGAAGAGAAACGCCAGTGCTCACAGCCTAAGATCCCAAAACAAAAACTACCGTATGCAAAGGAATTCGAAAATGGAATAAATTAGGCTACGGTAGTTTTCGTGCTGAAAGTTTCCGCCACGACAACTAAAATTTACTTTCTATCCAGATAACTTTTAGGCCAGTCGAAAGTTATTTTTCGAATTGTAGGTAGAGAACACATGTGTTTTGAGTCAACGCGCGCGAGAACCTATCTACGAGGAGTTCGTTGGGGCGCAATTGCTGACAATGGGCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGATGCTAACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACATACCGTTTCCGACCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAGAAATGAGAAAATACGAAATGAAACGTTGAGAACCAACAGGTTGATAACATGGACGTAGTCTTCCAATGGCAAAAATAAGAGTCAATGAGGAGGGCAGCAAGAACAGCTCTCTGTTCTCCGTCGTCCATGTATTGGTGTCCACAACATAGACACTTCTTGTGTCTTCCCACTCTCTCCGGTCACCACACTATTTGTCGACTGTCTTTGCGAAGGTCTCGCGAGCGCACCACAGTCGATGACACACCCTGCGCTGGTCAGTTTGATGTCTGTGCCCTCCGAGGCCGCACATGCTATTAACTAAGGGTCCTGTCGATCTGCGCACTCGTTTGGGCCAAGGCCAGCACGCAGCCCATCCTACTTCGTCGAACCTGCATTCTAAAGGAGAGGAGAGAGAAGAAAAAAAGCG</canonical>
            <polymorphic>CACTAAAACTACTAAGTGATGAACTTCAAAATGCAACTGTAGCTCGATTACTGTATTTTTCAAACAGTTTTCTCTGAGCCGCAAGTTGCCTAGACAGTCATGCCTGACTATTTCCAAAATCTCCGACTATTTTCACGCTAACCTGATCGTTACGTTTCAGTGTAGTCAAAAATTTGGGGCCGTGGAAGAGAAACGCCAGTGCTCACAGCCTAAGATCCCAAAACAAAAACTACCGTATGCAAAGGAATTCGAAAATGGAATAAATTAGGCTACGGTAGTTTTCGTGCTGAAAGTTTCCGCCACGACAACTAAAATTTACTTTCTATCCAGATAACTTTTAGGCCAGTCGAAAGTTATTTTTCGAATTGTAGGTAGAGAACACATGTGTTTTGAGTCAACGCGCGCGAGAACCTATCTACGAGGAGTTCGTTGGGGCGCAATTGCTGACAATGGGCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGAYGCTAACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACATACCGTTTCCGACCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAGAAATGAGAAAATACGAAATGAAACGTTGAGAACCAACAGGTTGATAACATGGACGTAGTCTTCCAATGGCAAAAATAAGAGTCAATGAGGAGGGCAGCAAGAACAGCTCTCTGTTCTCCGTCGTCCATGTATTGGTGTCCACAACATAGACACTTCTTGTGTCTTCCCACTCTCTCCGGTCACCACACTATTTGTCGACTGTCTTTGCGAAGGTCTCGCGAGCGCACCACAGTCGATGACACACCCTGCGCTGGTCAGTTTGATGTCTGTGCCCTCCGAGGCCGCACATGCTATTAACTAAGGGTCCTGTCGATCTGCGCACTCGTTTGGGCCAAGGCCAGCACGCAGCCCATCCTACTTCGTCGAACCTGCATTCTAAAGGAGAGGAGAGAGAAGAAAAAAAGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATTGTAGGTAGAGAACACAT</pcr_primer_p1>
		<pcr_primer_p2>TCGTATTTTCTCATTTCTATTGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGAATTGTAGGTAGAGAACACATGTGTTTTGAGTCAACGCGCGCGAGAACCTATCTACGAGGAGTTCGTTGGGGCGCAATTGCTGACAATGGGCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGATGCTAACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACATACCGTTTCCGACCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAGAAATGAGAAAATACGA</canonical_amplicon>
		<polymorphic_amplicon>CGAATTGTAGGTAGAGAACACATGTGTTTTGAGTCAACGCGCGCGAGAACCTATCTACGAGGAGTTCGTTGGGGCGCAATTGCTGACAATGGGCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGAYGCTAACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACATACCGTTTCCGACCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAGAAATGAGAAAATACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20654</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1340760</contig_pos>
        <strand>+</strand>
        <context>CTAAAAAATC[C/G]TGAGACTGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATC</left_flank>
        <right_flank>TGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGAGCTCAAATTTCATAGTGTAACGCCCCTCCGTTATACGGTAGCTAAAAATTCAAAAAGTTGACAGCTGAAAAACACTAAGAATTGGCATACTGTAAAATTAGAGCTAATTTTCTTTACGATATTTGTCAGAATTCATGCCATAATTTCAGTTAATTTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTACTACAAGGCTAGAACGATAGCACCCGTTGCTAATCCTGGGGTACGTT</canonical>
            <polymorphic>AATTGAGCTCAAATTTCATAGTGTAACGCCCCTCCGTTATACGGTAGCTAAAAATTCAAAAAGTTGACAGCTGAAAAACACTAAGAATTGGCATACTGTAAAATTAGAGCTAATTTTCTTTACGATATTTGTCAGAATTCATGCCATAATTTCAGTTAATTTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCSTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTACTACAAGGCTAGAACGATAGCACCCGTTGCTAATCCTGGGGTACGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>136 126 116 116 100 88 62 60 57 37 25 23 15 13 12 9 3 2</canonical_bands>
                <polymorphic_bands>188 136 126 116 116 62 60 57 37 25 23 15 13 12 9 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATATGAACAGTTGTGAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCGAGTTTTCTCATATCTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGA</canonical_amplicon>
		<polymorphic_amplicon>CCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCSTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20655</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1340773</contig_pos>
        <strand>+</strand>
        <context>AGACTGTTTT[C/T]GCTAAGGTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTT</left_flank>
        <right_flank>GCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCATAGTGTAACGCCCCTCCGTTATACGGTAGCTAAAAATTCAAAAAGTTGACAGCTGAAAAACACTAAGAATTGGCATACTGTAAAATTAGAGCTAATTTTCTTTACGATATTTGTCAGAATTCATGCCATAATTTCAGTTAATTTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTACTACAAGGCTAGAACGATAGCACCCGTTGCTAATCCTGGGGTACGTTTCCTCCTTATTTT</canonical>
            <polymorphic>TTTCATAGTGTAACGCCCCTCCGTTATACGGTAGCTAAAAATTCAAAAAGTTGACAGCTGAAAAACACTAAGAATTGGCATACTGTAAAATTAGAGCTAATTTTCTTTACGATATTTGTCAGAATTCATGCCATAATTTCAGTTAATTTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTYGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTACTACAAGGCTAGAACGATAGCACCCGTTGCTAATCCTGGGGTACGTTTCCTCCTTATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATATGAACAGTTGTGAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCGAGTTTTCTCATATCTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGA</canonical_amplicon>
		<polymorphic_amplicon>CCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTYGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20656</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1340861</contig_pos>
        <strand>+</strand>
        <context>GATTCTTTTG[G/T]GCTCGAGAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTG</left_flank>
        <right_flank>GCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTAGAGCTAATTTTCTTTACGATATTTGTCAGAATTCATGCCATAATTTCAGTTAATTTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTACTACAAGGCTAGAACGATAGCACCCGTTGCTAATCCTGGGGTACGTTTCCTCCTTATTTTGCAGAAAAATTCACAGTTTGGATTTTAGGAAGAAGGTGATGAATTTTGCGACAAATGCAACTACTGGAAAAGCGACAGAACACATCAT</canonical>
            <polymorphic>AATTAGAGCTAATTTTCTTTACGATATTTGTCAGAATTCATGCCATAATTTCAGTTAATTTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGKGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTACTACAAGGCTAGAACGATAGCACCCGTTGCTAATCCTGGGGTACGTTTCCTCCTTATTTTGCAGAAAAATTCACAGTTTGGATTTTAGGAAGAAGGTGATGAATTTTGCGACAAATGCAACTACTGGAAAAGCGACAGAACACATCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>136 126 116 100 95 88 62 60 51 44 37 25 15 13 12 9 6 3 2</canonical_bands>
                <polymorphic_bands>160 136 126 116 95 88 62 51 44 37 25 15 13 12 9 6 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAAGCTTCATTTTGGTC</pcr_primer_p1>
		<pcr_primer_p2>ATCCTGGTTTGTATCTGAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>341</pcr_amplicon_size>
		<canonical_amplicon>CAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGAT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGKGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20657</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1340882</contig_pos>
        <strand>+</strand>
        <context>TTTTGAGCAA[C/T]TAAAACAGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAA</left_flank>
        <right_flank>TAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATATTTGTCAGAATTCATGCCATAATTTCAGTTAATTTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTACTACAAGGCTAGAACGATAGCACCCGTTGCTAATCCTGGGGTACGTTTCCTCCTTATTTTGCAGAAAAATTCACAGTTTGGATTTTAGGAAGAAGGTGATGAATTTTGCGACAAATGCAACTACTGGAAAAGCGACAGAACACATCATTGCTCAGTGTGCGAGCGGTGT</canonical>
            <polymorphic>CGATATTTGTCAGAATTCATGCCATAATTTCAGTTAATTTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAAYTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTACTACAAGGCTAGAACGATAGCACCCGTTGCTAATCCTGGGGTACGTTTCCTCCTTATTTTGCAGAAAAATTCACAGTTTGGATTTTAGGAAGAAGGTGATGAATTTTGCGACAAATGCAACTACTGGAAAAGCGACAGAACACATCATTGCTCAGTGTGCGAGCGGTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>500 324 132 34 10</canonical_bands>
                <polymorphic_bands>824 132 34 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>242 159 113 109 75 75 68 37 34 23 19 13 12 11 10</canonical_bands>
                <polymorphic_bands>317 159 113 109 75 68 37 34 23 19 13 12 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTCGAGCTGACAAAGAGA</pcr_primer_p1>
		<pcr_primer_p2>ATCCTGGTTTGTATCTGAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>GAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGAT</canonical_amplicon>
		<polymorphic_amplicon>GAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAAYTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20658</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1342496</contig_pos>
        <strand>+</strand>
        <context>CAAYTACATT[C/G]CCGCCGGTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTTCGACGGAATCGAACATTTTTCCGATGTGTTATAATACCAACTACATT</left_flank>
        <right_flank>CCGCCGGTGATATTTGAGAATATTAATACGCGATACGATAACTTTGATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAAAAATATAGAAATGATCGGACACCTGACAGGCAAGCTCTAGGCTACTGAAAATCGTTGAAATGGCCAAGAATCAACTGAAAACTATTTTTTTTGACGATCTTATCGGACGGTGCTGTATGTTTTGGGTTACTGATTTGATATAGAATCTGAAAATATTCATTTCAATATTTCAAATTTTCAGGATTTGCGAGAACTGCAGTTGTCTTTTCTTATCTCCTCAGTGGCATCTTATTGGTTATGGTTGGCGGCCTTACTTTTTGGAACTTCTACTTGATATCCATTGGGTGCACATATATTGATTATTTGGTAGGTCAAATGAATTGAAACGCTTTTTCCTTCAAAAAAAAAATTTTCCAGAAACGAAGCGGAAACAAAAAAAAGCAGCAAACCCTGAGAAATCGGCTCAACAAAGGCTTCAAATCCAACTGGAAGAACTTTTTGGGGCTTCGACGGAATCGAACATTTTTCCGATGTGTTATAATACCAACTACATTCCCGCCGGTGATATTTGAGAATATTAATACGCGATACGATAACTTTGATATTGTATGATTTGAATTCTTGCCCATTTGCTCATCGTCAAGCTCACCCGAAAACTCTTGTGATCTGCTTAAGCTCCTGTTGGCATTTACGGTTATGTTGCATATTCTGCATCAACGAATTAGAACGCAAATTGATATATTTTCAATCCATAATAAAGAAAGACATACAATTCCTTGTTCGCGGCAGTTTGGTGAAAAACTAGATCAAAATAATTAATTTAAAACAAAATTGCATAAACCCGTAACACTTTCGTTAGCACCCTAAGACAGTAGATTGATACTCAGGGTTTCTTATTGCTCCAGAATTCGTCCAATGAGATTGCGGAGACGTTGTCTAGCACATTCATCACGGGTCGTTCGAATAGTTCCTTGTTTCGTCGAGTCCTTACAGTGCTGCCGCCTCTGTAAATCTCATAATTTGGATAATTTTCATTTATAGACTTGAAAAACCTG</canonical>
            <polymorphic>TCCAAAAATATAGAAATGATCGGACACCTGACAGGCAAGCTCTAGGCTACTGAAAATCGTTGAAATGGCCAAGAATCAACTGAAAACTATTTTTTTTGACGATCTTATCGGACGGTGCTGTATGTTTTGGGTTACTGATTTGATATAGAATCTGAAAATATTCATTTCAATATTTCAAATTTTCAGGATTTGCGAGAACTGCAGTTGTCTTTTCTTATCTCCTCAGTGGCATCTTATTGGTTATGGTTGGCGGCCTTACTTTTTGGAACTTCTACTTGATATCCATTGGGTGCACATATATTGATTATTTGGTAGGTCAAATGAATTGAAACGCTTTTTCCTTCAAAAAAAAAATTTTCCAGAAACGAAGCGGAAACAAAAAAAAGCAGCAAACCCTGAGAAATCGGCTCAACAAAGGCTTCAAATCCAACTGGAAGAACTTTTTGGGGCTTCGACGGAATCGAACATTTTTCCGATGTGTTATAATACCAACTACATTSCCGCCGGTGATATTTGAGAATATTAATACGCGATACGATAACTTTGATATTGTATGATTTGAATTCTTGCCCATTTGCTCATCGTCAAGCTCACCCGAAAACTCTTGTGATCTGCTTAAGCTCCTGTTGGCATTTACGGTTATGTTGCATATTCTGCATCAACGAATTAGAACGCAAATTGATATATTTTCAATCCATAATAAAGAAAGACATACAATTCCTTGTTCGCGGCAGTTTGGTGAAAAACTAGATCAAAATAATTAATTTAAAACAAAATTGCATAAACCCGTAACACTTTCGTTAGCACCCTAAGACAGTAGATTGATACTCAGGGTTTCTTATTGCTCCAGAATTCGTCCAATGAGATTGCGGAGACGTTGTCTAGCACATTCATCACGGGTCGTTCGAATAGTTCCTTGTTTCGTCGAGTCCTTACAGTGCTGCCGCCTCTGTAAATCTCATAATTTGGATAATTTTCATTTATAGACTTGAAAAACCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCCAACTGGAAGAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCTAATTCGTTGATGCAGAATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATCCAACTGGAAGAACTTTTTGGGGCTTCGACGGAATCGAACATTTTTCCGATGTGTTATAATACCAACTACATTCCCGCCGGTGATATTTGAGAATATTAATACGCGATACGATAACTTTGATATTGTATGATTTGAATTCTTGCCCATTTGCTCATCGTCAAGCTCACCCGAAAACTCTTGTGATCTGCTTAAGCTCCTGTTGGCATTTACGGTTATGTTGCATATTCTGCATCAACGAATTAGA</canonical_amplicon>
		<polymorphic_amplicon>AAATCCAACTGGAAGAACTTTTTGGGGCTTCGACGGAATCGAACATTTTTCCGATGTGTTATAATACCAACTACATTSCCGCCGGTGATATTTGAGAATATTAATACGCGATACGATAACTTTGATATTGTATGATTTGAATTCTTGCCCATTTGCTCATCGTCAAGCTCACCCGAAAACTCTTGTGATCTGCTTAAGCTCCTGTTGGCATTTACGGTTATGTTGCATATTCTGCATCAACGAATTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20659</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1357263</contig_pos>
        <strand>+</strand>
        <context>CCCTAATCAC[C/G]TGTGTTTTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTATTTTTTCTATTTTGTCTTCTTCTTTTTTACCGTATTCCCTAATCAC</left_flank>
        <right_flank>TGTGTTTTTATCTTTTTGATCTTATTTGATGAAACAGTGATGTGTCTGAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCTTGATTGGTATTATATGAACGTGTCCTTCAATTGGTTCCTGATGAAACGATGCGTGCATCAACTGTTTGCCAGGTATGATAACTGTCGCGCAAGCGAGAACCTGCAATAATACACGTTTTCTTTGCAGACAACGTTGCTGACGGAGACCGACCTCACTATTATCACCGGAAACAACCAACGTGTTGCCTGCCAGTCCGTCGCCGTTGATAGTGGAATCGGTGACCGGCATGTTCTTCACGACCGGCGGGCTTTTTTTGACCCGCCGACAATTATCAGTCATTACAGCCATGTCGTAAGGAGCGGACGACGTGTGTACAGCCCAGACCAGCGTATCATTGGGTTTCTCTTTAATGTCGAAACTAACTATGTAGGTATCACCATTCTCGTCGGCTGGCGAAATCTGGAATGTTAAATGAGATCGTTCAAAAAATTCGAAGAGAAAACTTTATTTTTTCTATTTTGTCTTCTTCTTTTTTACCGTATTCCCTAATCACGTGTGTTTTTATCTTTTTGATCTTATTTGATGAAACAGTGATGTGTCTGATTGATGGAATCGTAGAAGAAAAACGAAGACTTTACGGTTGTTAGCCTAGGAGAGTGGAGTAAGAAGAAAAAGAAGAAAGGGAAAAGTTATGATCATTTCAATTTAGGTCAGAAGCCGATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAGTCCTATATGATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGATAATAGTACAAAAAAATAGGGAATGAACGAACG</canonical>
            <polymorphic>GTTCTTGATTGGTATTATATGAACGTGTCCTTCAATTGGTTCCTGATGAAACGATGCGTGCATCAACTGTTTGCCAGGTATGATAACTGTCGCGCAAGCGAGAACCTGCAATAATACACGTTTTCTTTGCAGACAACGTTGCTGACGGAGACCGACCTCACTATTATCACCGGAAACAACCAACGTGTTGCCTGCCAGTCCGTCGCCGTTGATAGTGGAATCGGTGACCGGCATGTTCTTCACGACCGGCGGGCTTTTTTTGACCCGCCGACAATTATCAGTCATTACAGCCATGTCGTAAGGAGCGGACGACGTGTGTACAGCCCAGACCAGCGTATCATTGGGTTTCTCTTTAATGTCGAAACTAACTATGTAGGTATCACCATTCTCGTCGGCTGGCGAAATCTGGAATGTTAAATGAGATCGTTCAAAAAATTCGAAGAGAAAACTTTATTTTTTCTATTTTGTCTTCTTCTTTTTTACCGTATTCCCTAATCACSTGTGTTTTTATCTTTTTGATCTTATTTGATGAAACAGTGATGTGTCTGATTGATGGAATCGTAGAAGAAAAACGAAGACTTTACGGTTGTTAGCCTAGGAGAGTGGAGTAAGAAGAAAAAGAAGAAAGGGAAAAGTTATGATCATTTCAATTTAGGTCAGAAGCCGATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAGTCCTATATGATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGATAATAGTACAAAAAAATAGGGAATGAACGAACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACGTG</site>
                <isoschizomers>
                    <enzyme>AcvI</enzyme>
                    <enzyme>BbrPI</enzyme>
                    <enzyme>Eco72I</enzyme>
                    <enzyme>PmaCI</enzyme>
                    <enzyme>PmlI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 186 129 93 67 23</canonical_bands>
                <polymorphic_bands>688 129 93 67 23</polymorphic_bands>
            </assay>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>116 80 74 69 67 66 64 61 58 42 37 36 35 33 30 27 18 18 16 10 9 9 6 6 5 4 2 2</canonical_bands>
                <polymorphic_bands>116 80 74 69 67 66 64 61 58 42 37 36 35 33 30 27 18 18 16 10 9 9 6 6 6 5 2</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>502 186 129 95 47 23 18</canonical_bands>
                <polymorphic_bands>688 129 95 47 23 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATCTGGAATGTTAAATGAGA</pcr_primer_p1>
		<pcr_primer_p2>ATGATCATAACTTTTCCCTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAAATCTGGAATGTTAAATGAGATCGTTCAAAAAATTCGAAGAGAAAACTTTATTTTTTCTATTTTGTCTTCTTCTTTTTTACCGTATTCCCTAATCACGTGTGTTTTTATCTTTTTGATCTTATTTGATGAAACAGTGATGTGTCTGATTGATGGAATCGTAGAAGAAAAACGAAGACTTTACGGTTGTTAGCCTAGGAGAGTGGAGTAAGAAGAAAAAGAAGAAAGGGAAAAGTTATGATCAT</canonical_amplicon>
		<polymorphic_amplicon>GAAATCTGGAATGTTAAATGAGATCGTTCAAAAAATTCGAAGAGAAAACTTTATTTTTTCTATTTTGTCTTCTTCTTTTTTACCGTATTCCCTAATCACSTGTGTTTTTATCTTTTTGATCTTATTTGATGAAACAGTGATGTGTCTGATTGATGGAATCGTAGAAGAAAAACGAAGACTTTACGGTTGTTAGCCTAGGAGAGTGGAGTAAGAAGAAAAAGAAGAAAGGGAAAAGTTATGATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20660</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1357286</contig_pos>
        <strand>+</strand>
        <context>TTTTTGATCT[C/T]ATTTGATGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTTTTTTACCGTATTCCCTAATCACGTGTGTTTTTATCTTTTTGATCT</left_flank>
        <right_flank>ATTTGATGAAACAGTGATGTGTCTGATTGATGGAATCGTAGAAGAAAAAC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTGTCCTTCAATTGGTTCCTGATGAAACGATGCGTGCATCAACTGTTTGCCAGGTATGATAACTGTCGCGCAAGCGAGAACCTGCAATAATACACGTTTTCTTTGCAGACAACGTTGCTGACGGAGACCGACCTCACTATTATCACCGGAAACAACCAACGTGTTGCCTGCCAGTCCGTCGCCGTTGATAGTGGAATCGGTGACCGGCATGTTCTTCACGACCGGCGGGCTTTTTTTGACCCGCCGACAATTATCAGTCATTACAGCCATGTCGTAAGGAGCGGACGACGTGTGTACAGCCCAGACCAGCGTATCATTGGGTTTCTCTTTAATGTCGAAACTAACTATGTAGGTATCACCATTCTCGTCGGCTGGCGAAATCTGGAATGTTAAATGAGATCGTTCAAAAAATTCGAAGAGAAAACTTTATTTTTTCTATTTTGTCTTCTTCTTTTTTACCGTATTCCCTAATCACGTGTGTTTTTATCTTTTTGATCTTATTTGATGAAACAGTGATGTGTCTGATTGATGGAATCGTAGAAGAAAAACGAAGACTTTACGGTTGTTAGCCTAGGAGAGTGGAGTAAGAAGAAAAAGAAGAAAGGGAAAAGTTATGATCATTTCAATTTAGGTCAGAAGCCGATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAGTCCTATATGATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGATAATAGTACAAAAAAATAGGGAATGAACGAACGGTTTAGGATAAGCGATGACACTG</canonical>
            <polymorphic>CGTGTCCTTCAATTGGTTCCTGATGAAACGATGCGTGCATCAACTGTTTGCCAGGTATGATAACTGTCGCGCAAGCGAGAACCTGCAATAATACACGTTTTCTTTGCAGACAACGTTGCTGACGGAGACCGACCTCACTATTATCACCGGAAACAACCAACGTGTTGCCTGCCAGTCCGTCGCCGTTGATAGTGGAATCGGTGACCGGCATGTTCTTCACGACCGGCGGGCTTTTTTTGACCCGCCGACAATTATCAGTCATTACAGCCATGTCGTAAGGAGCGGACGACGTGTGTACAGCCCAGACCAGCGTATCATTGGGTTTCTCTTTAATGTCGAAACTAACTATGTAGGTATCACCATTCTCGTCGGCTGGCGAAATCTGGAATGTTAAATGAGATCGTTCAAAAAATTCGAAGAGAAAACTTTATTTTTTCTATTTTGTCTTCTTCTTTTTTACCGTATTCCCTAATCACGTGTGTTTTTATCTTTTTGATCTYATTTGATGAAACAGTGATGTGTCTGATTGATGGAATCGTAGAAGAAAAACGAAGACTTTACGGTTGTTAGCCTAGGAGAGTGGAGTAAGAAGAAAAAGAAGAAAGGGAAAAGTTATGATCATTTCAATTTAGGTCAGAAGCCGATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAGTCCTATATGATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGATAATAGTACAAAAAAATAGGGAATGAACGAACGGTTTAGGATAAGCGATGACACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATCTGGAATGTTAAATGAGA</pcr_primer_p1>
		<pcr_primer_p2>ATGATCATAACTTTTCCCTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAAATCTGGAATGTTAAATGAGATCGTTCAAAAAATTCGAAGAGAAAACTTTATTTTTTCTATTTTGTCTTCTTCTTTTTTACCGTATTCCCTAATCACGTGTGTTTTTATCTTTTTGATCTTATTTGATGAAACAGTGATGTGTCTGATTGATGGAATCGTAGAAGAAAAACGAAGACTTTACGGTTGTTAGCCTAGGAGAGTGGAGTAAGAAGAAAAAGAAGAAAGGGAAAAGTTATGATCAT</canonical_amplicon>
		<polymorphic_amplicon>GAAATCTGGAATGTTAAATGAGATCGTTCAAAAAATTCGAAGAGAAAACTTTATTTTTTCTATTTTGTCTTCTTCTTTTTTACCGTATTCCCTAATCACGTGTGTTTTTATCTTTTTGATCTYATTTGATGAAACAGTGATGTGTCTGATTGATGGAATCGTAGAAGAAAAACGAAGACTTTACGGTTGTTAGCCTAGGAGAGTGGAGTAAGAAGAAAAAGAAGAAAGGGAAAAGTTATGATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20661</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1357297</contig_pos>
        <strand>+</strand>
        <context>ATTTGATGAA[A/T]CAGTGATGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGTATTCCCTAATCACGTGTGTTTTTATCTTTTTGATCTTATTTGATGAA</left_flank>
        <right_flank>CAGTGATGTGTCTGATTGATGGAATCGTAGAAGAAAAACGAAGACTTTAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGGTTCCTGATGAAACGATGCGTGCATCAACTGTTTGCCAGGTATGATAACTGTCGCGCAAGCGAGAACCTGCAATAATACACGTTTTCTTTGCAGACAACGTTGCTGACGGAGACCGACCTCACTATTATCACCGGAAACAACCAACGTGTTGCCTGCCAGTCCGTCGCCGTTGATAGTGGAATCGGTGACCGGCATGTTCTTCACGACCGGCGGGCTTTTTTTGACCCGCCGACAATTATCAGTCATTACAGCCATGTCGTAAGGAGCGGACGACGTGTGTACAGCCCAGACCAGCGTATCATTGGGTTTCTCTTTAATGTCGAAACTAACTATGTAGGTATCACCATTCTCGTCGGCTGGCGAAATCTGGAATGTTAAATGAGATCGTTCAAAAAATTCGAAGAGAAAACTTTATTTTTTCTATTTTGTCTTCTTCTTTTTTACCGTATTCCCTAATCACGTGTGTTTTTATCTTTTTGATCTTATTTGATGAAACAGTGATGTGTCTGATTGATGGAATCGTAGAAGAAAAACGAAGACTTTACGGTTGTTAGCCTAGGAGAGTGGAGTAAGAAGAAAAAGAAGAAAGGGAAAAGTTATGATCATTTCAATTTAGGTCAGAAGCCGATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAGTCCTATATGATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGATAATAGTACAAAAAAATAGGGAATGAACGAACGGTTTAGGATAAGCGATGACACTGTACATATTATC</canonical>
            <polymorphic>ATTGGTTCCTGATGAAACGATGCGTGCATCAACTGTTTGCCAGGTATGATAACTGTCGCGCAAGCGAGAACCTGCAATAATACACGTTTTCTTTGCAGACAACGTTGCTGACGGAGACCGACCTCACTATTATCACCGGAAACAACCAACGTGTTGCCTGCCAGTCCGTCGCCGTTGATAGTGGAATCGGTGACCGGCATGTTCTTCACGACCGGCGGGCTTTTTTTGACCCGCCGACAATTATCAGTCATTACAGCCATGTCGTAAGGAGCGGACGACGTGTGTACAGCCCAGACCAGCGTATCATTGGGTTTCTCTTTAATGTCGAAACTAACTATGTAGGTATCACCATTCTCGTCGGCTGGCGAAATCTGGAATGTTAAATGAGATCGTTCAAAAAATTCGAAGAGAAAACTTTATTTTTTCTATTTTGTCTTCTTCTTTTTTACCGTATTCCCTAATCACGTGTGTTTTTATCTTTTTGATCTTATTTGATGAAWCAGTGATGTGTCTGATTGATGGAATCGTAGAAGAAAAACGAAGACTTTACGGTTGTTAGCCTAGGAGAGTGGAGTAAGAAGAAAAAGAAGAAAGGGAAAAGTTATGATCATTTCAATTTAGGTCAGAAGCCGATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAGTCCTATATGATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGATAATAGTACAAAAAAATAGGGAATGAACGAACGGTTTAGGATAAGCGATGACACTGTACATATTATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>396 270 121 52 49 34 24 22 20 12</canonical_bands>
                <polymorphic_bands>396 270 121 101 34 24 22 20 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATCTGGAATGTTAAATGAGA</pcr_primer_p1>
		<pcr_primer_p2>ATGATCATAACTTTTCCCTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAAATCTGGAATGTTAAATGAGATCGTTCAAAAAATTCGAAGAGAAAACTTTATTTTTTCTATTTTGTCTTCTTCTTTTTTACCGTATTCCCTAATCACGTGTGTTTTTATCTTTTTGATCTTATTTGATGAAACAGTGATGTGTCTGATTGATGGAATCGTAGAAGAAAAACGAAGACTTTACGGTTGTTAGCCTAGGAGAGTGGAGTAAGAAGAAAAAGAAGAAAGGGAAAAGTTATGATCAT</canonical_amplicon>
		<polymorphic_amplicon>GAAATCTGGAATGTTAAATGAGATCGTTCAAAAAATTCGAAGAGAAAACTTTATTTTTTCTATTTTGTCTTCTTCTTTTTTACCGTATTCCCTAATCACGTGTGTTTTTATCTTTTTGATCTTATTTGATGAAWCAGTGATGTGTCTGATTGATGGAATCGTAGAAGAAAAACGAAGACTTTACGGTTGTTAGCCTAGGAGAGTGGAGTAAGAAGAAAAAGAAGAAAGGGAAAAGTTATGATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20662</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1357477</contig_pos>
        <strand>+</strand>
        <context>AACACAGAAA[C/T]TTYAAAATTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAA</left_flank>
        <right_flank>TTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGAATCGGTGACCGGCATGTTCTTCACGACCGGCGGGCTTTTTTTGACCCGCCGACAATTATCAGTCATTACAGCCATGTCGTAAGGAGCGGACGACGTGTGTACAGCCCAGACCAGCGTATCATTGGGTTTCTCTTTAATGTCGAAACTAACTATGTAGGTATCACCATTCTCGTCGGCTGGCGAAATCTGGAATGTTAAATGAGATCGTTCAAAAAATTCGAAGAGAAAACTTTATTTTTTCTATTTTGTCTTCTTCTTTTTTACCGTATTCCCTAATCACGTGTGTTTTTATCTTTTTGATCTTATTTGATGAAACAGTGATGTGTCTGATTGATGGAATCGTAGAAGAAAAACGAAGACTTTACGGTTGTTAGCCTAGGAGAGTGGAGTAAGAAGAAAAAGAAGAAAGGGAAAAGTTATGATCATTTCAATTTAGGTCAGAAGCCGATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAGTCCTATATGATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGATAATAGTACAAAAAAATAGGGAATGAACGAACGGTTTAGGATAAGCGATGACACTGTACATATTATCAGCCGCGATCCCGGCCTGCTGATTCACTCGCGGCGCCTTTTTGTCAAAAGTATGGGGTTGGACGACGCCGACGGGGGGACGAGAAGAATCAAATGAGAAGAAATGAGAGAAGAAGAAGAAGAAGAAGTGAAATACTGGGGCGGGAAAGAACAATCATTACTCATTACTCATCTATTCACT</canonical>
            <polymorphic>GTGGAATCGGTGACCGGCATGTTCTTCACGACCGGCGGGCTTTTTTTGACCCGCCGACAATTATCAGTCATTACAGCCATGTCGTAAGGAGCGGACGACGTGTGTACAGCCCAGACCAGCGTATCATTGGGTTTCTCTTTAATGTCGAAACTAACTATGTAGGTATCACCATTCTCGTCGGCTGGCGAAATCTGGAATGTTAAATGAGATCGTTCAAAAAATTCGAAGAGAAAACTTTATTTTTTCTATTTTGTCTTCTTCTTTTTTACCGTATTCCCTAATCACGTGTGTTTTTATCTTTTTGATCTTATTTGATGAAACAGTGATGTGTCTGATTGATGGAATCGTAGAAGAAAAACGAAGACTTTACGGTTGTTAGCCTAGGAGAGTGGAGTAAGAAGAAAAAGAAGAAAGGGAAAAGTTATGATCATTTCAATTTAGGTCAGAAGCCGATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAAYTTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAGTCCTATATGATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGATAATAGTACAAAAAAATAGGGAATGAACGAACGGTTTAGGATAAGCGATGACACTGTACATATTATCAGCCGCGATCCCGGCCTGCTGATTCACTCGCGGCGCCTTTTTGTCAAAAGTATGGGGTTGGACGACGCCGACGGGGGGACGAGAAGAATCAAATGAGAAGAAATGAGAGAAGAAGAAGAAGAAGAAGTGAAATACTGGGGCGGGAAAGAACAATCATTACTCATTACTCATCTATTCACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGAAAGGGAAAAGTTATGAT</pcr_primer_p1>
		<pcr_primer_p2>CCTCTTCCTCCTACTGTGTTATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAGAAAGGGAAAAGTTATGATCATTTCAATTTAGGTCAGAAGCCGATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGG</canonical_amplicon>
		<polymorphic_amplicon>AGAAGAAAGGGAAAAGTTATGATCATTTCAATTTAGGTCAGAAGCCGATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAAYTTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20663</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1357480</contig_pos>
        <strand>+</strand>
        <context>ACAGAAAYTT[C/T]AAAATTGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTT</left_flank>
        <right_flank>AAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATCGGTGACCGGCATGTTCTTCACGACCGGCGGGCTTTTTTTGACCCGCCGACAATTATCAGTCATTACAGCCATGTCGTAAGGAGCGGACGACGTGTGTACAGCCCAGACCAGCGTATCATTGGGTTTCTCTTTAATGTCGAAACTAACTATGTAGGTATCACCATTCTCGTCGGCTGGCGAAATCTGGAATGTTAAATGAGATCGTTCAAAAAATTCGAAGAGAAAACTTTATTTTTTCTATTTTGTCTTCTTCTTTTTTACCGTATTCCCTAATCACGTGTGTTTTTATCTTTTTGATCTTATTTGATGAAACAGTGATGTGTCTGATTGATGGAATCGTAGAAGAAAAACGAAGACTTTACGGTTGTTAGCCTAGGAGAGTGGAGTAAGAAGAAAAAGAAGAAAGGGAAAAGTTATGATCATTTCAATTTAGGTCAGAAGCCGATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAGTCCTATATGATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGATAATAGTACAAAAAAATAGGGAATGAACGAACGGTTTAGGATAAGCGATGACACTGTACATATTATCAGCCGCGATCCCGGCCTGCTGATTCACTCGCGGCGCCTTTTTGTCAAAAGTATGGGGTTGGACGACGCCGACGGGGGGACGAGAAGAATCAAATGAGAAGAAATGAGAGAAGAAGAAGAAGAAGAAGTGAAATACTGGGGCGGGAAAGAACAATCATTACTCATTACTCATCTATTCACTTTA</canonical>
            <polymorphic>GAATCGGTGACCGGCATGTTCTTCACGACCGGCGGGCTTTTTTTGACCCGCCGACAATTATCAGTCATTACAGCCATGTCGTAAGGAGCGGACGACGTGTGTACAGCCCAGACCAGCGTATCATTGGGTTTCTCTTTAATGTCGAAACTAACTATGTAGGTATCACCATTCTCGTCGGCTGGCGAAATCTGGAATGTTAAATGAGATCGTTCAAAAAATTCGAAGAGAAAACTTTATTTTTTCTATTTTGTCTTCTTCTTTTTTACCGTATTCCCTAATCACGTGTGTTTTTATCTTTTTGATCTTATTTGATGAAACAGTGATGTGTCTGATTGATGGAATCGTAGAAGAAAAACGAAGACTTTACGGTTGTTAGCCTAGGAGAGTGGAGTAAGAAGAAAAAGAAGAAAGGGAAAAGTTATGATCATTTCAATTTAGGTCAGAAGCCGATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTTYAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAGTCCTATATGATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGATAATAGTACAAAAAAATAGGGAATGAACGAACGGTTTAGGATAAGCGATGACACTGTACATATTATCAGCCGCGATCCCGGCCTGCTGATTCACTCGCGGCGCCTTTTTGTCAAAAGTATGGGGTTGGACGACGCCGACGGGGGGACGAGAAGAATCAAATGAGAAGAAATGAGAGAAGAAGAAGAAGAAGAAGTGAAATACTGGGGCGGGAAAGAACAATCATTACTCATTACTCATCTATTCACTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGAAAGGGAAAAGTTATGAT</pcr_primer_p1>
		<pcr_primer_p2>CCTCTTCCTCCTACTGTGTTATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAGAAAGGGAAAAGTTATGATCATTTCAATTTAGGTCAGAAGCCGATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGG</canonical_amplicon>
		<polymorphic_amplicon>AGAAGAAAGGGAAAAGTTATGATCATTTCAATTTAGGTCAGAAGCCGATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTTYAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20664</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1357549</contig_pos>
        <strand>+</strand>
        <context>ACTGAAAGAA[C/T]GATTTACACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAA</left_flank>
        <right_flank>GATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGCCATGTCGTAAGGAGCGGACGACGTGTGTACAGCCCAGACCAGCGTATCATTGGGTTTCTCTTTAATGTCGAAACTAACTATGTAGGTATCACCATTCTCGTCGGCTGGCGAAATCTGGAATGTTAAATGAGATCGTTCAAAAAATTCGAAGAGAAAACTTTATTTTTTCTATTTTGTCTTCTTCTTTTTTACCGTATTCCCTAATCACGTGTGTTTTTATCTTTTTGATCTTATTTGATGAAACAGTGATGTGTCTGATTGATGGAATCGTAGAAGAAAAACGAAGACTTTACGGTTGTTAGCCTAGGAGAGTGGAGTAAGAAGAAAAAGAAGAAAGGGAAAAGTTATGATCATTTCAATTTAGGTCAGAAGCCGATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAGTCCTATATGATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGATAATAGTACAAAAAAATAGGGAATGAACGAACGGTTTAGGATAAGCGATGACACTGTACATATTATCAGCCGCGATCCCGGCCTGCTGATTCACTCGCGGCGCCTTTTTGTCAAAAGTATGGGGTTGGACGACGCCGACGGGGGGACGAGAAGAATCAAATGAGAAGAAATGAGAGAAGAAGAAGAAGAAGAAGTGAAATACTGGGGCGGGAAAGAACAATCATTACTCATTACTCATCTATTCACTTTAATGTTTTTGGTGGGGTCTTTCTCTCTCGTTTTTTTCCCTTTTCTAGAAATCTGTTCTAATCACTTCTAA</canonical>
            <polymorphic>ACAGCCATGTCGTAAGGAGCGGACGACGTGTGTACAGCCCAGACCAGCGTATCATTGGGTTTCTCTTTAATGTCGAAACTAACTATGTAGGTATCACCATTCTCGTCGGCTGGCGAAATCTGGAATGTTAAATGAGATCGTTCAAAAAATTCGAAGAGAAAACTTTATTTTTTCTATTTTGTCTTCTTCTTTTTTACCGTATTCCCTAATCACGTGTGTTTTTATCTTTTTGATCTTATTTGATGAAACAGTGATGTGTCTGATTGATGGAATCGTAGAAGAAAAACGAAGACTTTACGGTTGTTAGCCTAGGAGAGTGGAGTAAGAAGAAAAAGAAGAAAGGGAAAAGTTATGATCATTTCAATTTAGGTCAGAAGCCGATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAAYGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAGTCCTATATGATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGATAATAGTACAAAAAAATAGGGAATGAACGAACGGTTTAGGATAAGCGATGACACTGTACATATTATCAGCCGCGATCCCGGCCTGCTGATTCACTCGCGGCGCCTTTTTGTCAAAAGTATGGGGTTGGACGACGCCGACGGGGGGACGAGAAGAATCAAATGAGAAGAAATGAGAGAAGAAGAAGAAGAAGAAGTGAAATACTGGGGCGGGAAAGAACAATCATTACTCATTACTCATCTATTCACTTTAATGTTTTTGGTGGGGTCTTTCTCTCTCGTTTTTTTCCCTTTTCTAGAAATCTGTTCTAATCACTTCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGAAAGGGAAAAGTTATGAT</pcr_primer_p1>
		<pcr_primer_p2>CCTCTTCCTCCTACTGTGTTATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAGAAAGGGAAAAGTTATGATCATTTCAATTTAGGTCAGAAGCCGATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGG</canonical_amplicon>
		<polymorphic_amplicon>AGAAGAAAGGGAAAAGTTATGATCATTTCAATTTAGGTCAGAAGCCGATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAAYGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20665</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1357591</contig_pos>
        <strand>+</strand>
        <context>CGAATCAACT[C/G]GCACTATCAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACT</left_flank>
        <right_flank>GCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGGAAAACTAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAGCGTATCATTGGGTTTCTCTTTAATGTCGAAACTAACTATGTAGGTATCACCATTCTCGTCGGCTGGCGAAATCTGGAATGTTAAATGAGATCGTTCAAAAAATTCGAAGAGAAAACTTTATTTTTTCTATTTTGTCTTCTTCTTTTTTACCGTATTCCCTAATCACGTGTGTTTTTATCTTTTTGATCTTATTTGATGAAACAGTGATGTGTCTGATTGATGGAATCGTAGAAGAAAAACGAAGACTTTACGGTTGTTAGCCTAGGAGAGTGGAGTAAGAAGAAAAAGAAGAAAGGGAAAAGTTATGATCATTTCAATTTAGGTCAGAAGCCGATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAGTCCTATATGATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGATAATAGTACAAAAAAATAGGGAATGAACGAACGGTTTAGGATAAGCGATGACACTGTACATATTATCAGCCGCGATCCCGGCCTGCTGATTCACTCGCGGCGCCTTTTTGTCAAAAGTATGGGGTTGGACGACGCCGACGGGGGGACGAGAAGAATCAAATGAGAAGAAATGAGAGAAGAAGAAGAAGAAGAAGTGAAATACTGGGGCGGGAAAGAACAATCATTACTCATTACTCATCTATTCACTTTAATGTTTTTGGTGGGGTCTTTCTCTCTCGTTTTTTTCCCTTTTCTAGAAATCTGTTCTAATCACTTCTAATCAATCTTTGTCTCCTAGAGACTGGACGTTATGGATTTATAT</canonical>
            <polymorphic>ACCAGCGTATCATTGGGTTTCTCTTTAATGTCGAAACTAACTATGTAGGTATCACCATTCTCGTCGGCTGGCGAAATCTGGAATGTTAAATGAGATCGTTCAAAAAATTCGAAGAGAAAACTTTATTTTTTCTATTTTGTCTTCTTCTTTTTTACCGTATTCCCTAATCACGTGTGTTTTTATCTTTTTGATCTTATTTGATGAAACAGTGATGTGTCTGATTGATGGAATCGTAGAAGAAAAACGAAGACTTTACGGTTGTTAGCCTAGGAGAGTGGAGTAAGAAGAAAAAGAAGAAAGGGAAAAGTTATGATCATTTCAATTTAGGTCAGAAGCCGATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTSGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAGTCCTATATGATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGATAATAGTACAAAAAAATAGGGAATGAACGAACGGTTTAGGATAAGCGATGACACTGTACATATTATCAGCCGCGATCCCGGCCTGCTGATTCACTCGCGGCGCCTTTTTGTCAAAAGTATGGGGTTGGACGACGCCGACGGGGGGACGAGAAGAATCAAATGAGAAGAAATGAGAGAAGAAGAAGAAGAAGAAGTGAAATACTGGGGCGGGAAAGAACAATCATTACTCATTACTCATCTATTCACTTTAATGTTTTTGGTGGGGTCTTTCTCTCTCGTTTTTTTCCCTTTTCTAGAAATCTGTTCTAATCACTTCTAATCAATCTTTGTCTCCTAGAGACTGGACGTTATGGATTTATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCACTATTCCGTCTTTGTTG</pcr_primer_p1>
		<pcr_primer_p2>CTTTATTGTATGGCGAGAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAG</canonical_amplicon>
		<polymorphic_amplicon>ATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTSGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20666</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1357608</contig_pos>
        <strand>+</strand>
        <context>TCACCTACAC[A/G]AGATAACACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACAC</left_flank>
        <right_flank>AGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTCTTTAATGTCGAAACTAACTATGTAGGTATCACCATTCTCGTCGGCTGGCGAAATCTGGAATGTTAAATGAGATCGTTCAAAAAATTCGAAGAGAAAACTTTATTTTTTCTATTTTGTCTTCTTCTTTTTTACCGTATTCCCTAATCACGTGTGTTTTTATCTTTTTGATCTTATTTGATGAAACAGTGATGTGTCTGATTGATGGAATCGTAGAAGAAAAACGAAGACTTTACGGTTGTTAGCCTAGGAGAGTGGAGTAAGAAGAAAAAGAAGAAAGGGAAAAGTTATGATCATTTCAATTTAGGTCAGAAGCCGATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAGTCCTATATGATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGATAATAGTACAAAAAAATAGGGAATGAACGAACGGTTTAGGATAAGCGATGACACTGTACATATTATCAGCCGCGATCCCGGCCTGCTGATTCACTCGCGGCGCCTTTTTGTCAAAAGTATGGGGTTGGACGACGCCGACGGGGGGACGAGAAGAATCAAATGAGAAGAAATGAGAGAAGAAGAAGAAGAAGAAGTGAAATACTGGGGCGGGAAAGAACAATCATTACTCATTACTCATCTATTCACTTTAATGTTTTTGGTGGGGTCTTTCTCTCTCGTTTTTTTCCCTTTTCTAGAAATCTGTTCTAATCACTTCTAATCAATCTTTGTCTCCTAGAGACTGGACGTTATGGATTTATATGGATCACATGCTTTCTT</canonical>
            <polymorphic>TTTCTCTTTAATGTCGAAACTAACTATGTAGGTATCACCATTCTCGTCGGCTGGCGAAATCTGGAATGTTAAATGAGATCGTTCAAAAAATTCGAAGAGAAAACTTTATTTTTTCTATTTTGTCTTCTTCTTTTTTACCGTATTCCCTAATCACGTGTGTTTTTATCTTTTTGATCTTATTTGATGAAACAGTGATGTGTCTGATTGATGGAATCGTAGAAGAAAAACGAAGACTTTACGGTTGTTAGCCTAGGAGAGTGGAGTAAGAAGAAAAAGAAGAAAGGGAAAAGTTATGATCATTTCAATTTAGGTCAGAAGCCGATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACRAGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAGTCCTATATGATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGATAATAGTACAAAAAAATAGGGAATGAACGAACGGTTTAGGATAAGCGATGACACTGTACATATTATCAGCCGCGATCCCGGCCTGCTGATTCACTCGCGGCGCCTTTTTGTCAAAAGTATGGGGTTGGACGACGCCGACGGGGGGACGAGAAGAATCAAATGAGAAGAAATGAGAGAAGAAGAAGAAGAAGAAGTGAAATACTGGGGCGGGAAAGAACAATCATTACTCATTACTCATCTATTCACTTTAATGTTTTTGGTGGGGTCTTTCTCTCTCGTTTTTTTCCCTTTTCTAGAAATCTGTTCTAATCACTTCTAATCAATCTTTGTCTCCTAGAGACTGGACGTTATGGATTTATATGGATCACATGCTTTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCACTATTCCGTCTTTGTTG</pcr_primer_p1>
		<pcr_primer_p2>CTTTATTGTATGGCGAGAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAG</canonical_amplicon>
		<polymorphic_amplicon>ATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACRAGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20667</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1357681</contig_pos>
        <strand>+</strand>
        <context>ACAATAAAGT[C/T]YTATATGATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAGT</left_flank>
        <right_flank>CTATATGATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGATCGTTCAAAAAATTCGAAGAGAAAACTTTATTTTTTCTATTTTGTCTTCTTCTTTTTTACCGTATTCCCTAATCACGTGTGTTTTTATCTTTTTGATCTTATTTGATGAAACAGTGATGTGTCTGATTGATGGAATCGTAGAAGAAAAACGAAGACTTTACGGTTGTTAGCCTAGGAGAGTGGAGTAAGAAGAAAAAGAAGAAAGGGAAAAGTTATGATCATTTCAATTTAGGTCAGAAGCCGATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAGTCCTATATGATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGATAATAGTACAAAAAAATAGGGAATGAACGAACGGTTTAGGATAAGCGATGACACTGTACATATTATCAGCCGCGATCCCGGCCTGCTGATTCACTCGCGGCGCCTTTTTGTCAAAAGTATGGGGTTGGACGACGCCGACGGGGGGACGAGAAGAATCAAATGAGAAGAAATGAGAGAAGAAGAAGAAGAAGAAGTGAAATACTGGGGCGGGAAAGAACAATCATTACTCATTACTCATCTATTCACTTTAATGTTTTTGGTGGGGTCTTTCTCTCTCGTTTTTTTCCCTTTTCTAGAAATCTGTTCTAATCACTTCTAATCAATCTTTGTCTCCTAGAGACTGGACGTTATGGATTTATATGGATCACATGCTTTCTTTGTCATCAACGATCAAATAATGCGAACGACGCTCTCAAGTAATCTATTGCAGCAATATTTAGCCAAGGAATGT</canonical>
            <polymorphic>TGAGATCGTTCAAAAAATTCGAAGAGAAAACTTTATTTTTTCTATTTTGTCTTCTTCTTTTTTACCGTATTCCCTAATCACGTGTGTTTTTATCTTTTTGATCTTATTTGATGAAACAGTGATGTGTCTGATTGATGGAATCGTAGAAGAAAAACGAAGACTTTACGGTTGTTAGCCTAGGAGAGTGGAGTAAGAAGAAAAAGAAGAAAGGGAAAAGTTATGATCATTTCAATTTAGGTCAGAAGCCGATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAGTYCTATATGATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGATAATAGTACAAAAAAATAGGGAATGAACGAACGGTTTAGGATAAGCGATGACACTGTACATATTATCAGCCGCGATCCCGGCCTGCTGATTCACTCGCGGCGCCTTTTTGTCAAAAGTATGGGGTTGGACGACGCCGACGGGGGGACGAGAAGAATCAAATGAGAAGAAATGAGAGAAGAAGAAGAAGAAGAAGTGAAATACTGGGGCGGGAAAGAACAATCATTACTCATTACTCATCTATTCACTTTAATGTTTTTGGTGGGGTCTTTCTCTCTCGTTTTTTTCCCTTTTCTAGAAATCTGTTCTAATCACTTCTAATCAATCTTTGTCTCCTAGAGACTGGACGTTATGGATTTATATGGATCACATGCTTTCTTTGTCATCAACGATCAAATAATGCGAACGACGCTCTCAAGTAATCTATTGCAGCAATATTTAGCCAAGGAATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTTTCATCCAAATAACCTT</pcr_primer_p1>
		<pcr_primer_p2>GTTCGTTCATTCCCTATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAGTCCTATATGATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGATAATAGTACAAAAAAATAGGGAATGAACGAAC</canonical_amplicon>
		<polymorphic_amplicon>TGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAGTYCTATATGATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGATAATAGTACAAAAAAATAGGGAATGAACGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20668</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1357682</contig_pos>
        <strand>+</strand>
        <context>CAATAAAGTY[C/T]TATATGATGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAGTC</left_flank>
        <right_flank>TATATGATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGATCGTTCAAAAAATTCGAAGAGAAAACTTTATTTTTTCTATTTTGTCTTCTTCTTTTTTACCGTATTCCCTAATCACGTGTGTTTTTATCTTTTTGATCTTATTTGATGAAACAGTGATGTGTCTGATTGATGGAATCGTAGAAGAAAAACGAAGACTTTACGGTTGTTAGCCTAGGAGAGTGGAGTAAGAAGAAAAAGAAGAAAGGGAAAAGTTATGATCATTTCAATTTAGGTCAGAAGCCGATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAGTCCTATATGATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGATAATAGTACAAAAAAATAGGGAATGAACGAACGGTTTAGGATAAGCGATGACACTGTACATATTATCAGCCGCGATCCCGGCCTGCTGATTCACTCGCGGCGCCTTTTTGTCAAAAGTATGGGGTTGGACGACGCCGACGGGGGGACGAGAAGAATCAAATGAGAAGAAATGAGAGAAGAAGAAGAAGAAGAAGTGAAATACTGGGGCGGGAAAGAACAATCATTACTCATTACTCATCTATTCACTTTAATGTTTTTGGTGGGGTCTTTCTCTCTCGTTTTTTTCCCTTTTCTAGAAATCTGTTCTAATCACTTCTAATCAATCTTTGTCTCCTAGAGACTGGACGTTATGGATTTATATGGATCACATGCTTTCTTTGTCATCAACGATCAAATAATGCGAACGACGCTCTCAAGTAATCTATTGCAGCAATATTTAGCCAAGGAATGTT</canonical>
            <polymorphic>GAGATCGTTCAAAAAATTCGAAGAGAAAACTTTATTTTTTCTATTTTGTCTTCTTCTTTTTTACCGTATTCCCTAATCACGTGTGTTTTTATCTTTTTGATCTTATTTGATGAAACAGTGATGTGTCTGATTGATGGAATCGTAGAAGAAAAACGAAGACTTTACGGTTGTTAGCCTAGGAGAGTGGAGTAAGAAGAAAAAGAAGAAAGGGAAAAGTTATGATCATTTCAATTTAGGTCAGAAGCCGATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAGTCYTATATGATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGATAATAGTACAAAAAAATAGGGAATGAACGAACGGTTTAGGATAAGCGATGACACTGTACATATTATCAGCCGCGATCCCGGCCTGCTGATTCACTCGCGGCGCCTTTTTGTCAAAAGTATGGGGTTGGACGACGCCGACGGGGGGACGAGAAGAATCAAATGAGAAGAAATGAGAGAAGAAGAAGAAGAAGAAGTGAAATACTGGGGCGGGAAAGAACAATCATTACTCATTACTCATCTATTCACTTTAATGTTTTTGGTGGGGTCTTTCTCTCTCGTTTTTTTCCCTTTTCTAGAAATCTGTTCTAATCACTTCTAATCAATCTTTGTCTCCTAGAGACTGGACGTTATGGATTTATATGGATCACATGCTTTCTTTGTCATCAACGATCAAATAATGCGAACGACGCTCTCAAGTAATCTATTGCAGCAATATTTAGCCAAGGAATGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTTTCATCCAAATAACCTT</pcr_primer_p1>
		<pcr_primer_p2>GTTCGTTCATTCCCTATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAGTCCTATATGATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGATAATAGTACAAAAAAATAGGGAATGAACGAAC</canonical_amplicon>
		<polymorphic_amplicon>TGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAGTCYTATATGATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGATAATAGTACAAAAAAATAGGGAATGAACGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20669</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1357708</contig_pos>
        <strand>+</strand>
        <context>AGAATGGAAC[A/G]CATTGATGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACTTCTCGCCATACAATAAAGTCCTATATGATGATGTGGAGAATGGAAC</left_flank>
        <right_flank>CATTGATGTATAAATGAAAAGATAATAGTACAAAAAAATAGGGAATGAAC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTTTATTTTTTCTATTTTGTCTTCTTCTTTTTTACCGTATTCCCTAATCACGTGTGTTTTTATCTTTTTGATCTTATTTGATGAAACAGTGATGTGTCTGATTGATGGAATCGTAGAAGAAAAACGAAGACTTTACGGTTGTTAGCCTAGGAGAGTGGAGTAAGAAGAAAAAGAAGAAAGGGAAAAGTTATGATCATTTCAATTTAGGTCAGAAGCCGATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAGTCCTATATGATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGATAATAGTACAAAAAAATAGGGAATGAACGAACGGTTTAGGATAAGCGATGACACTGTACATATTATCAGCCGCGATCCCGGCCTGCTGATTCACTCGCGGCGCCTTTTTGTCAAAAGTATGGGGTTGGACGACGCCGACGGGGGGACGAGAAGAATCAAATGAGAAGAAATGAGAGAAGAAGAAGAAGAAGAAGTGAAATACTGGGGCGGGAAAGAACAATCATTACTCATTACTCATCTATTCACTTTAATGTTTTTGGTGGGGTCTTTCTCTCTCGTTTTTTTCCCTTTTCTAGAAATCTGTTCTAATCACTTCTAATCAATCTTTGTCTCCTAGAGACTGGACGTTATGGATTTATATGGATCACATGCTTTCTTTGTCATCAACGATCAAATAATGCGAACGACGCTCTCAAGTAATCTATTGCAGCAATATTTAGCCAAGGAATGTTGTATACAGTGAAATCTCAAGTAGAAC</canonical>
            <polymorphic>AAACTTTATTTTTTCTATTTTGTCTTCTTCTTTTTTACCGTATTCCCTAATCACGTGTGTTTTTATCTTTTTGATCTTATTTGATGAAACAGTGATGTGTCTGATTGATGGAATCGTAGAAGAAAAACGAAGACTTTACGGTTGTTAGCCTAGGAGAGTGGAGTAAGAAGAAAAAGAAGAAAGGGAAAAGTTATGATCATTTCAATTTAGGTCAGAAGCCGATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAGTCCTATATGATGATGTGGAGAATGGAACRCATTGATGTATAAATGAAAAGATAATAGTACAAAAAAATAGGGAATGAACGAACGGTTTAGGATAAGCGATGACACTGTACATATTATCAGCCGCGATCCCGGCCTGCTGATTCACTCGCGGCGCCTTTTTGTCAAAAGTATGGGGTTGGACGACGCCGACGGGGGGACGAGAAGAATCAAATGAGAAGAAATGAGAGAAGAAGAAGAAGAAGAAGTGAAATACTGGGGCGGGAAAGAACAATCATTACTCATTACTCATCTATTCACTTTAATGTTTTTGGTGGGGTCTTTCTCTCTCGTTTTTTTCCCTTTTCTAGAAATCTGTTCTAATCACTTCTAATCAATCTTTGTCTCCTAGAGACTGGACGTTATGGATTTATATGGATCACATGCTTTCTTTGTCATCAACGATCAAATAATGCGAACGACGCTCTCAAGTAATCTATTGCAGCAATATTTAGCCAAGGAATGTTGTATACAGTGAAATCTCAAGTAGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACTTCTCGCCATACAATAA</pcr_primer_p1>
		<pcr_primer_p2>TCATTTCTTCTCATTTGATTCTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAACTTCTCGCCATACAATAAAGTCCTATATGATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGATAATAGTACAAAAAAATAGGGAATGAACGAACGGTTTAGGATAAGCGATGACACTGTACATATTATCAGCCGCGATCCCGGCCTGCTGATTCACTCGCGGCGCCTTTTTGTCAAAAGTATGGGGTTGGACGACGCCGACGGGGGGACGAGAAGAATCAAATGAGAAGAAATGA</canonical_amplicon>
		<polymorphic_amplicon>CAACTTCTCGCCATACAATAAAGTCCTATATGATGATGTGGAGAATGGAACRCATTGATGTATAAATGAAAAGATAATAGTACAAAAAAATAGGGAATGAACGAACGGTTTAGGATAAGCGATGACACTGTACATATTATCAGCCGCGATCCCGGCCTGCTGATTCACTCGCGGCGCCTTTTTGTCAAAAGTATGGGGTTGGACGACGCCGACGGGGGGACGAGAAGAATCAAATGAGAAGAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20670</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1357738</contig_pos>
        <strand>+</strand>
        <context>AGATAATAGT[A/G]CAAAAAAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGATAATAGT</left_flank>
        <right_flank>CAAAAAAATAGGGAATGAACGAACGGTTTAGGATAAGCGATGACACTGTA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTACCGTATTCCCTAATCACGTGTGTTTTTATCTTTTTGATCTTATTTGATGAAACAGTGATGTGTCTGATTGATGGAATCGTAGAAGAAAAACGAAGACTTTACGGTTGTTAGCCTAGGAGAGTGGAGTAAGAAGAAAAAGAAGAAAGGGAAAAGTTATGATCATTTCAATTTAGGTCAGAAGCCGATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAGTCCTATATGATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGATAATAGTACAAAAAAATAGGGAATGAACGAACGGTTTAGGATAAGCGATGACACTGTACATATTATCAGCCGCGATCCCGGCCTGCTGATTCACTCGCGGCGCCTTTTTGTCAAAAGTATGGGGTTGGACGACGCCGACGGGGGGACGAGAAGAATCAAATGAGAAGAAATGAGAGAAGAAGAAGAAGAAGAAGTGAAATACTGGGGCGGGAAAGAACAATCATTACTCATTACTCATCTATTCACTTTAATGTTTTTGGTGGGGTCTTTCTCTCTCGTTTTTTTCCCTTTTCTAGAAATCTGTTCTAATCACTTCTAATCAATCTTTGTCTCCTAGAGACTGGACGTTATGGATTTATATGGATCACATGCTTTCTTTGTCATCAACGATCAAATAATGCGAACGACGCTCTCAAGTAATCTATTGCAGCAATATTTAGCCAAGGAATGTTGTATACAGTGAAATCTCAAGTAGAACGCCACTGTCAATTTTGAGCTCAATCATCTC</canonical>
            <polymorphic>TTTTTTACCGTATTCCCTAATCACGTGTGTTTTTATCTTTTTGATCTTATTTGATGAAACAGTGATGTGTCTGATTGATGGAATCGTAGAAGAAAAACGAAGACTTTACGGTTGTTAGCCTAGGAGAGTGGAGTAAGAAGAAAAAGAAGAAAGGGAAAAGTTATGATCATTTCAATTTAGGTCAGAAGCCGATTCACTATTCCGTCTTTGTTGAAAATTGTTTCTAAAAACACAGAAACTTCAAAATTGAAAAAAAGAGATATTCTTTTTGTTTTTCATCCAAATAACCTTGGGAGAACCACTGAAAGAACGATTTACACTTCCCTATAGTTTCGACCCAATCGAATCAACTCGCACTATCACCTACACAAGATAACACAGTAGGAGGAAGAGGAAAACTAACCGTCAAAAAACCCTTCAACTTCTCGCCATACAATAAAGTCCTATATGATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGATAATAGTRCAAAAAAATAGGGAATGAACGAACGGTTTAGGATAAGCGATGACACTGTACATATTATCAGCCGCGATCCCGGCCTGCTGATTCACTCGCGGCGCCTTTTTGTCAAAAGTATGGGGTTGGACGACGCCGACGGGGGGACGAGAAGAATCAAATGAGAAGAAATGAGAGAAGAAGAAGAAGAAGAAGTGAAATACTGGGGCGGGAAAGAACAATCATTACTCATTACTCATCTATTCACTTTAATGTTTTTGGTGGGGTCTTTCTCTCTCGTTTTTTTCCCTTTTCTAGAAATCTGTTCTAATCACTTCTAATCAATCTTTGTCTCCTAGAGACTGGACGTTATGGATTTATATGGATCACATGCTTTCTTTGTCATCAACGATCAAATAATGCGAACGACGCTCTCAAGTAATCTATTGCAGCAATATTTAGCCAAGGAATGTTGTATACAGTGAAATCTCAAGTAGAACGCCACTGTCAATTTTGAGCTCAATCATCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 451 50</canonical_bands>
                <polymorphic_bands>549 451</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>497 453 50</canonical_bands>
                <polymorphic_bands>547 453</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTTCTCGCCATACAATAAAG</pcr_primer_p1>
		<pcr_primer_p2>TCATTTCTTCTCATTTGATTCTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AACTTCTCGCCATACAATAAAGTCCTATATGATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGATAATAGTACAAAAAAATAGGGAATGAACGAACGGTTTAGGATAAGCGATGACACTGTACATATTATCAGCCGCGATCCCGGCCTGCTGATTCACTCGCGGCGCCTTTTTGTCAAAAGTATGGGGTTGGACGACGCCGACGGGGGGACGAGAAGAATCAAATGAGAAGAAATGA</canonical_amplicon>
		<polymorphic_amplicon>AACTTCTCGCCATACAATAAAGTCCTATATGATGATGTGGAGAATGGAACGCATTGATGTATAAATGAAAAGATAATAGTRCAAAAAAATAGGGAATGAACGAACGGTTTAGGATAAGCGATGACACTGTACATATTATCAGCCGCGATCCCGGCCTGCTGATTCACTCGCGGCGCCTTTTTGTCAAAAGTATGGGGTTGGACGACGCCGACGGGGGGACGAGAAGAATCAAATGAGAAGAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20689</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1361410</contig_pos>
        <strand>+</strand>
        <context>TGTAATAAAA[A/C]ATTTRCTTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGATCATATTCGAGATGATCATGAACAGAGACAAATAATCTGTAATAAAA</left_flank>
        <right_flank>ATTTACTTTAAATTTTACTTTGTGTTAATTCATACCTTCAATTGGCTCAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCGTTTCGATTGGCCTGTCTTCTTCCTCCAACCTCATGTTTATCTTCGGATATAATGGATTGAAACAATAAACTTGATCTTGATTCTGCTCTTCGAACAGTATTTTCGCAGTTGGTTCCATTTTTCTCAATTCCTCGTTAGCCGGAATCTCGAAGATCTTCTGCACTGTTTGGTAGAGCCCTTGAAGAACCTCATCTGGGAATCTCTGAGAGGCTTGGATGTAATTCTGAAATGAAAATTGCAGTAGAAATTAAGTTCTCTCTATTCTTCTCACCTCCAATACAAGCTCACGGATTTCATTGGCCATTGATGGGTGCTGCGTGAAAAATTGAGGATATCCCGTGTGAAATGCTAGAAGAAGTTTTAAGTAGTGATTGACGTTGGGCAGATAGTAATCATTGCCAAAATGATCCCGTGAGTTCTTGAAGGGAATATTTACCGCAGACCTGATCATATTCGAGATGATCATGAACAGAGACAAATAATCTGTAATAAAACATTTACTTTAAATTTTACTTTGTGTTAATTCATACCTTCAATTGGCTCATTCTTCTTAGCATATTCACTGATTCCCAATTGAATGCAGTTGAGAACATCTGTTTTGACCCAAATTGTGGCCAACATGACGCAGTCATAGTATTGGGAGAAATAATCCCTTTTTCTCGGTGAGTTGTACCTTTTGTTAATCCGGCACTGAAATTGATTTTTTTTAAATCTTAAATCAGTATTAAATCTCACCATCAATAGGTTGACACTTTCTCGAAATATTTTGAAATCTTCTTGTTTTCTCTCGTTTTTGGGATCCTCCATTCGTCTTCGTGCCAAACCGAAAAAAAGCTTCAGATTCTTCAATAATTCTTCAAACACCGACGCATTTTGCATTTGTTTTCTCAGTTCCAAATAGTCCAAAAACTTGTGGATCTGTTCCAAACAAGAGCCCTCCTCATTTTGCATTGGTTCTCGAAGAAGTTGATCCGCGAATGCATTGTGTGTTTCAT</canonical>
            <polymorphic>CCTCGTTTCGATTGGCCTGTCTTCTTCCTCCAACCTCATGTTTATCTTCGGATATAATGGATTGAAACAATAAACTTGATCTTGATTCTGCTCTTCGAACAGTATTTTCGCAGTTGGTTCCATTTTTCTCAATTCCTCGTTAGCCGGAATCTCGAAGATCTTCTGCACTGTTTGGTAGAGCCCTTGAAGAACCTCATCTGGGAATCTCTGAGAGGCTTGGATGTAATTCTGAAATGAAAATTGCAGTAGAAATTAAGTTCTCTCTATTCTTCTCACCTCCAATACAAGCTCACGGATTTCATTGGCCATTGATGGGTGCTGCGTGAAAAATTGAGGATATCCCGTGTGAAATGCTAGAAGAAGTTTTAAGTAGTGATTGACGTTGGGCAGATAGTAATCATTGCCAAAATGATCCCGTGAGTTCTTGAAGGGAATATTTACCGCAGACCTGATCATATTCGAGATGATCATGAACAGAGACAAATAATCTGTAATAAAAMATTTACTTTAAATTTTACTTTGTGTTAATTCATACCTTCAATTGGCTCATTCTTCTTAGCATATTCACTGATTCCCAATTGAATGCAGTTGAGAACATCTGTTTTGACCCAAATTGTGGCCAACATGACGCAGTCATAGTATTGGGAGAAATAATCCCTTTTTCTCGGTGAGTTGTACCTTTTGTTAATCCGGCACTGAAATTGATTTTTTTTAAATCTTAAATCAGTATTAAATCTCACCATCAATAGGTTGACACTTTCTCGAAATATTTTGAAATCTTCTTGTTTTCTCTCGTTTTTGGGATCCTCCATTCGTCTTCGTGCCAAACCGAAAAAAAGCTTCAGATTCTTCAATAATTCTTCAAACACCGACGCATTTTGCATTTGTTTTCTCAGTTCCAAATAGTCCAAAAACTTGTGGATCTGTTCCAAACAAGAGCCCTCCTCATTTTGCATTGGTTCTCGAAGAAGTTGATCCGCGAATGCATTGTGTGTTTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGTTCTTGAAGGGAATATTTA</pcr_primer_p1>
		<pcr_primer_p2>AGGGATTATTTCTCCCAATACTA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TGAGTTCTTGAAGGGAATATTTACCGCAGACCTGATCATATTCGAGATGATCATGAACAGAGACAAATAATCTGTAATAAAACATTTACTTTAAATTTTACTTTGTGTTAATTCATACCTTCAATTGGCTCATTCTTCTTAGCATATTCACTGATTCCCAATTGAATGCAGTTGAGAACATCTGTTTTGACCCAAATTGTGGCCAACATGACGCAGTCATAGTATTGGGAGAAATAATCCCT</canonical_amplicon>
		<polymorphic_amplicon>TGAGTTCTTGAAGGGAATATTTACCGCAGACCTGATCATATTCGAGATGATCATGAACAGAGACAAATAATCTGTAATAAAAMATTTACTTTAAATTTTACTTTGTGTTAATTCATACCTTCAATTGGCTCATTCTTCTTAGCATATTCACTGATTCCCAATTGAATGCAGTTGAGAACATCTGTTTTGACCCAAATTGTGGCCAACATGACGCAGTCATAGTATTGGGAGAAATAATCCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20690</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1361415</contig_pos>
        <strand>+</strand>
        <context>TAAAAMATTT[A/G]CTTTAAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATTCGAGATGATCATGAACAGAGACAAATAATCTGTAATAAAACATTT</left_flank>
        <right_flank>CTTTAAATTTTACTTTGTGTTAATTCATACCTTCAATTGGCTCATTCTTC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGATTGGCCTGTCTTCTTCCTCCAACCTCATGTTTATCTTCGGATATAATGGATTGAAACAATAAACTTGATCTTGATTCTGCTCTTCGAACAGTATTTTCGCAGTTGGTTCCATTTTTCTCAATTCCTCGTTAGCCGGAATCTCGAAGATCTTCTGCACTGTTTGGTAGAGCCCTTGAAGAACCTCATCTGGGAATCTCTGAGAGGCTTGGATGTAATTCTGAAATGAAAATTGCAGTAGAAATTAAGTTCTCTCTATTCTTCTCACCTCCAATACAAGCTCACGGATTTCATTGGCCATTGATGGGTGCTGCGTGAAAAATTGAGGATATCCCGTGTGAAATGCTAGAAGAAGTTTTAAGTAGTGATTGACGTTGGGCAGATAGTAATCATTGCCAAAATGATCCCGTGAGTTCTTGAAGGGAATATTTACCGCAGACCTGATCATATTCGAGATGATCATGAACAGAGACAAATAATCTGTAATAAAACATTTACTTTAAATTTTACTTTGTGTTAATTCATACCTTCAATTGGCTCATTCTTCTTAGCATATTCACTGATTCCCAATTGAATGCAGTTGAGAACATCTGTTTTGACCCAAATTGTGGCCAACATGACGCAGTCATAGTATTGGGAGAAATAATCCCTTTTTCTCGGTGAGTTGTACCTTTTGTTAATCCGGCACTGAAATTGATTTTTTTTAAATCTTAAATCAGTATTAAATCTCACCATCAATAGGTTGACACTTTCTCGAAATATTTTGAAATCTTCTTGTTTTCTCTCGTTTTTGGGATCCTCCATTCGTCTTCGTGCCAAACCGAAAAAAAGCTTCAGATTCTTCAATAATTCTTCAAACACCGACGCATTTTGCATTTGTTTTCTCAGTTCCAAATAGTCCAAAAACTTGTGGATCTGTTCCAAACAAGAGCCCTCCTCATTTTGCATTGGTTCTCGAAGAAGTTGATCCGCGAATGCATTGTGTGTTTCATTTTCT</canonical>
            <polymorphic>TTTCGATTGGCCTGTCTTCTTCCTCCAACCTCATGTTTATCTTCGGATATAATGGATTGAAACAATAAACTTGATCTTGATTCTGCTCTTCGAACAGTATTTTCGCAGTTGGTTCCATTTTTCTCAATTCCTCGTTAGCCGGAATCTCGAAGATCTTCTGCACTGTTTGGTAGAGCCCTTGAAGAACCTCATCTGGGAATCTCTGAGAGGCTTGGATGTAATTCTGAAATGAAAATTGCAGTAGAAATTAAGTTCTCTCTATTCTTCTCACCTCCAATACAAGCTCACGGATTTCATTGGCCATTGATGGGTGCTGCGTGAAAAATTGAGGATATCCCGTGTGAAATGCTAGAAGAAGTTTTAAGTAGTGATTGACGTTGGGCAGATAGTAATCATTGCCAAAATGATCCCGTGAGTTCTTGAAGGGAATATTTACCGCAGACCTGATCATATTCGAGATGATCATGAACAGAGACAAATAATCTGTAATAAAACATTTRCTTTAAATTTTACTTTGTGTTAATTCATACCTTCAATTGGCTCATTCTTCTTAGCATATTCACTGATTCCCAATTGAATGCAGTTGAGAACATCTGTTTTGACCCAAATTGTGGCCAACATGACGCAGTCATAGTATTGGGAGAAATAATCCCTTTTTCTCGGTGAGTTGTACCTTTTGTTAATCCGGCACTGAAATTGATTTTTTTTAAATCTTAAATCAGTATTAAATCTCACCATCAATAGGTTGACACTTTCTCGAAATATTTTGAAATCTTCTTGTTTTCTCTCGTTTTTGGGATCCTCCATTCGTCTTCGTGCCAAACCGAAAAAAAGCTTCAGATTCTTCAATAATTCTTCAAACACCGACGCATTTTGCATTTGTTTTCTCAGTTCCAAATAGTCCAAAAACTTGTGGATCTGTTCCAAACAAGAGCCCTCCTCATTTTGCATTGGTTCTCGAAGAAGTTGATCCGCGAATGCATTGTGTGTTTCATTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGTTCTTGAAGGGAATATTTA</pcr_primer_p1>
		<pcr_primer_p2>AGGGATTATTTCTCCCAATACTA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TGAGTTCTTGAAGGGAATATTTACCGCAGACCTGATCATATTCGAGATGATCATGAACAGAGACAAATAATCTGTAATAAAACATTTACTTTAAATTTTACTTTGTGTTAATTCATACCTTCAATTGGCTCATTCTTCTTAGCATATTCACTGATTCCCAATTGAATGCAGTTGAGAACATCTGTTTTGACCCAAATTGTGGCCAACATGACGCAGTCATAGTATTGGGAGAAATAATCCCT</canonical_amplicon>
		<polymorphic_amplicon>TGAGTTCTTGAAGGGAATATTTACCGCAGACCTGATCATATTCGAGATGATCATGAACAGAGACAAATAATCTGTAATAAAACATTTRCTTTAAATTTTACTTTGTGTTAATTCATACCTTCAATTGGCTCATTCTTCTTAGCATATTCACTGATTCCCAATTGAATGCAGTTGAGAACATCTGTTTTGACCCAAATTGTGGCCAACATGACGCAGTCATAGTATTGGGAGAAATAATCCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20691</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1361448</contig_pos>
        <strand>+</strand>
        <context>ATTCATACCT[C/T]CAATTGGCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTGTAATAAAACATTTACTTTAAATTTTACTTTGTGTTAATTCATACCT</left_flank>
        <right_flank>CAATTGGCTCATTCTTCTTAGCATATTCACTGATTCCCAATTGAATGCAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTATCTTCGGATATAATGGATTGAAACAATAAACTTGATCTTGATTCTGCTCTTCGAACAGTATTTTCGCAGTTGGTTCCATTTTTCTCAATTCCTCGTTAGCCGGAATCTCGAAGATCTTCTGCACTGTTTGGTAGAGCCCTTGAAGAACCTCATCTGGGAATCTCTGAGAGGCTTGGATGTAATTCTGAAATGAAAATTGCAGTAGAAATTAAGTTCTCTCTATTCTTCTCACCTCCAATACAAGCTCACGGATTTCATTGGCCATTGATGGGTGCTGCGTGAAAAATTGAGGATATCCCGTGTGAAATGCTAGAAGAAGTTTTAAGTAGTGATTGACGTTGGGCAGATAGTAATCATTGCCAAAATGATCCCGTGAGTTCTTGAAGGGAATATTTACCGCAGACCTGATCATATTCGAGATGATCATGAACAGAGACAAATAATCTGTAATAAAACATTTACTTTAAATTTTACTTTGTGTTAATTCATACCTTCAATTGGCTCATTCTTCTTAGCATATTCACTGATTCCCAATTGAATGCAGTTGAGAACATCTGTTTTGACCCAAATTGTGGCCAACATGACGCAGTCATAGTATTGGGAGAAATAATCCCTTTTTCTCGGTGAGTTGTACCTTTTGTTAATCCGGCACTGAAATTGATTTTTTTTAAATCTTAAATCAGTATTAAATCTCACCATCAATAGGTTGACACTTTCTCGAAATATTTTGAAATCTTCTTGTTTTCTCTCGTTTTTGGGATCCTCCATTCGTCTTCGTGCCAAACCGAAAAAAAGCTTCAGATTCTTCAATAATTCTTCAAACACCGACGCATTTTGCATTTGTTTTCTCAGTTCCAAATAGTCCAAAAACTTGTGGATCTGTTCCAAACAAGAGCCCTCCTCATTTTGCATTGGTTCTCGAAGAAGTTGATCCGCGAATGCATTGTGTGTTTCATTTTCTGCAGAGTCCAAGAAACGACGAGCAGCAACAACC</canonical>
            <polymorphic>TGTTTATCTTCGGATATAATGGATTGAAACAATAAACTTGATCTTGATTCTGCTCTTCGAACAGTATTTTCGCAGTTGGTTCCATTTTTCTCAATTCCTCGTTAGCCGGAATCTCGAAGATCTTCTGCACTGTTTGGTAGAGCCCTTGAAGAACCTCATCTGGGAATCTCTGAGAGGCTTGGATGTAATTCTGAAATGAAAATTGCAGTAGAAATTAAGTTCTCTCTATTCTTCTCACCTCCAATACAAGCTCACGGATTTCATTGGCCATTGATGGGTGCTGCGTGAAAAATTGAGGATATCCCGTGTGAAATGCTAGAAGAAGTTTTAAGTAGTGATTGACGTTGGGCAGATAGTAATCATTGCCAAAATGATCCCGTGAGTTCTTGAAGGGAATATTTACCGCAGACCTGATCATATTCGAGATGATCATGAACAGAGACAAATAATCTGTAATAAAACATTTACTTTAAATTTTACTTTGTGTTAATTCATACCTYCAATTGGCTCATTCTTCTTAGCATATTCACTGATTCCCAATTGAATGCAGTTGAGAACATCTGTTTTGACCCAAATTGTGGCCAACATGACGCAGTCATAGTATTGGGAGAAATAATCCCTTTTTCTCGGTGAGTTGTACCTTTTGTTAATCCGGCACTGAAATTGATTTTTTTTAAATCTTAAATCAGTATTAAATCTCACCATCAATAGGTTGACACTTTCTCGAAATATTTTGAAATCTTCTTGTTTTCTCTCGTTTTTGGGATCCTCCATTCGTCTTCGTGCCAAACCGAAAAAAAGCTTCAGATTCTTCAATAATTCTTCAAACACCGACGCATTTTGCATTTGTTTTCTCAGTTCCAAATAGTCCAAAAACTTGTGGATCTGTTCCAAACAAGAGCCCTCCTCATTTTGCATTGGTTCTCGAAGAAGTTGATCCGCGAATGCATTGTGTGTTTCATTTTCTGCAGAGTCCAAGAAACGACGAGCAGCAACAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGTTCTTGAAGGGAATATTTA</pcr_primer_p1>
		<pcr_primer_p2>AGGGATTATTTCTCCCAATACTA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TGAGTTCTTGAAGGGAATATTTACCGCAGACCTGATCATATTCGAGATGATCATGAACAGAGACAAATAATCTGTAATAAAACATTTACTTTAAATTTTACTTTGTGTTAATTCATACCTTCAATTGGCTCATTCTTCTTAGCATATTCACTGATTCCCAATTGAATGCAGTTGAGAACATCTGTTTTGACCCAAATTGTGGCCAACATGACGCAGTCATAGTATTGGGAGAAATAATCCCT</canonical_amplicon>
		<polymorphic_amplicon>TGAGTTCTTGAAGGGAATATTTACCGCAGACCTGATCATATTCGAGATGATCATGAACAGAGACAAATAATCTGTAATAAAACATTTACTTTAAATTTTACTTTGTGTTAATTCATACCTYCAATTGGCTCATTCTTCTTAGCATATTCACTGATTCCCAATTGAATGCAGTTGAGAACATCTGTTTTGACCCAAATTGTGGCCAACATGACGCAGTCATAGTATTGGGAGAAATAATCCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20692</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1361531</contig_pos>
        <strand>+</strand>
        <context>AAATTGTGGC[C/T]ARCATGACGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCCCAATTGAATGCAGTTGAGAACATCTGTTTTGACCCAAATTGTGGC</left_flank>
        <right_flank>AACATGACGCAGTCATAGTATTGGGAGAAATAATCCCTTTTTCTCGGTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTCTCAATTCCTCGTTAGCCGGAATCTCGAAGATCTTCTGCACTGTTTGGTAGAGCCCTTGAAGAACCTCATCTGGGAATCTCTGAGAGGCTTGGATGTAATTCTGAAATGAAAATTGCAGTAGAAATTAAGTTCTCTCTATTCTTCTCACCTCCAATACAAGCTCACGGATTTCATTGGCCATTGATGGGTGCTGCGTGAAAAATTGAGGATATCCCGTGTGAAATGCTAGAAGAAGTTTTAAGTAGTGATTGACGTTGGGCAGATAGTAATCATTGCCAAAATGATCCCGTGAGTTCTTGAAGGGAATATTTACCGCAGACCTGATCATATTCGAGATGATCATGAACAGAGACAAATAATCTGTAATAAAACATTTACTTTAAATTTTACTTTGTGTTAATTCATACCTTCAATTGGCTCATTCTTCTTAGCATATTCACTGATTCCCAATTGAATGCAGTTGAGAACATCTGTTTTGACCCAAATTGTGGCCAACATGACGCAGTCATAGTATTGGGAGAAATAATCCCTTTTTCTCGGTGAGTTGTACCTTTTGTTAATCCGGCACTGAAATTGATTTTTTTTAAATCTTAAATCAGTATTAAATCTCACCATCAATAGGTTGACACTTTCTCGAAATATTTTGAAATCTTCTTGTTTTCTCTCGTTTTTGGGATCCTCCATTCGTCTTCGTGCCAAACCGAAAAAAAGCTTCAGATTCTTCAATAATTCTTCAAACACCGACGCATTTTGCATTTGTTTTCTCAGTTCCAAATAGTCCAAAAACTTGTGGATCTGTTCCAAACAAGAGCCCTCCTCATTTTGCATTGGTTCTCGAAGAAGTTGATCCGCGAATGCATTGTGTGTTTCATTTTCTGCAGAGTCCAAGAAACGACGAGCAGCAACAACCCAATTCTGATCGTTTTCCAACACCATCGACAGCAAAGGTGGGGCGTTCTGAAAAAAAATAATATTTGGGATTTTTAATTGGCA</canonical>
            <polymorphic>ATTTTTCTCAATTCCTCGTTAGCCGGAATCTCGAAGATCTTCTGCACTGTTTGGTAGAGCCCTTGAAGAACCTCATCTGGGAATCTCTGAGAGGCTTGGATGTAATTCTGAAATGAAAATTGCAGTAGAAATTAAGTTCTCTCTATTCTTCTCACCTCCAATACAAGCTCACGGATTTCATTGGCCATTGATGGGTGCTGCGTGAAAAATTGAGGATATCCCGTGTGAAATGCTAGAAGAAGTTTTAAGTAGTGATTGACGTTGGGCAGATAGTAATCATTGCCAAAATGATCCCGTGAGTTCTTGAAGGGAATATTTACCGCAGACCTGATCATATTCGAGATGATCATGAACAGAGACAAATAATCTGTAATAAAACATTTACTTTAAATTTTACTTTGTGTTAATTCATACCTTCAATTGGCTCATTCTTCTTAGCATATTCACTGATTCCCAATTGAATGCAGTTGAGAACATCTGTTTTGACCCAAATTGTGGCYAACATGACGCAGTCATAGTATTGGGAGAAATAATCCCTTTTTCTCGGTGAGTTGTACCTTTTGTTAATCCGGCACTGAAATTGATTTTTTTTAAATCTTAAATCAGTATTAAATCTCACCATCAATAGGTTGACACTTTCTCGAAATATTTTGAAATCTTCTTGTTTTCTCTCGTTTTTGGGATCCTCCATTCGTCTTCGTGCCAAACCGAAAAAAAGCTTCAGATTCTTCAATAATTCTTCAAACACCGACGCATTTTGCATTTGTTTTCTCAGTTCCAAATAGTCCAAAAACTTGTGGATCTGTTCCAAACAAGAGCCCTCCTCATTTTGCATTGGTTCTCGAAGAAGTTGATCCGCGAATGCATTGTGTGTTTCATTTTCTGCAGAGTCCAAGAAACGACGAGCAGCAACAACCCAATTCTGATCGTTTTCCAACACCATCGACAGCAAAGGTGGGGCGTTCTGAAAAAAAATAATATTTGGGATTTTTAATTGGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGGCCA</site>
                <isoschizomers>
                    <enzyme>BalI</enzyme>
                    <enzyme>MlsI</enzyme>
                    <enzyme>MluNI</enzyme>
                    <enzyme>MscI</enzyme>
                    <enzyme>Msp20I</enzyme>
                </isoschizomers>
                <canonical_bands>502 314 184</canonical_bands>
                <polymorphic_bands>816 184</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>502 314 184</canonical_bands>
                <polymorphic_bands>816 184</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 314 182</canonical_bands>
                <polymorphic_bands>818 182</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>240 220 182 100 74 73 37 35 22 17</canonical_bands>
                <polymorphic_bands>294 240 182 100 73 37 35 22 17</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 314 184</canonical_bands>
                <polymorphic_bands>816 184</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTCATTCTTCTTAGCATATTCA</pcr_primer_p1>
		<pcr_primer_p2>GAGAGAAAACAAGAAGATTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTCATTCTTCTTAGCATATTCACTGATTCCCAATTGAATGCAGTTGAGAACATCTGTTTTGACCCAAATTGTGGCCAACATGACGCAGTCATAGTATTGGGAGAAATAATCCCTTTTTCTCGGTGAGTTGTACCTTTTGTTAATCCGGCACTGAAATTGATTTTTTTTAAATCTTAAATCAGTATTAAATCTCACCATCAATAGGTTGACACTTTCTCGAAATATTTTGAAATCTTCTTGTTTTCTCTC</canonical_amplicon>
		<polymorphic_amplicon>GCTCATTCTTCTTAGCATATTCACTGATTCCCAATTGAATGCAGTTGAGAACATCTGTTTTGACCCAAATTGTGGCYAACATGACGCAGTCATAGTATTGGGAGAAATAATCCCTTTTTCTCGGTGAGTTGTACCTTTTGTTAATCCGGCACTGAAATTGATTTTTTTTAAATCTTAAATCAGTATTAAATCTCACCATCAATAGGTTGACACTTTCTCGAAATATTTTGAAATCTTCTTGTTTTCTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20693</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1361533</contig_pos>
        <strand>+</strand>
        <context>ATTGTGGCYA[A/G]CATGACGCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCCAATTGAATGCAGTTGAGAACATCTGTTTTGACCCAAATTGTGGCCA</left_flank>
        <right_flank>CATGACGCAGTCATAGTATTGGGAGAAATAATCCCTTTTTCTCGGTGAGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCTCAATTCCTCGTTAGCCGGAATCTCGAAGATCTTCTGCACTGTTTGGTAGAGCCCTTGAAGAACCTCATCTGGGAATCTCTGAGAGGCTTGGATGTAATTCTGAAATGAAAATTGCAGTAGAAATTAAGTTCTCTCTATTCTTCTCACCTCCAATACAAGCTCACGGATTTCATTGGCCATTGATGGGTGCTGCGTGAAAAATTGAGGATATCCCGTGTGAAATGCTAGAAGAAGTTTTAAGTAGTGATTGACGTTGGGCAGATAGTAATCATTGCCAAAATGATCCCGTGAGTTCTTGAAGGGAATATTTACCGCAGACCTGATCATATTCGAGATGATCATGAACAGAGACAAATAATCTGTAATAAAACATTTACTTTAAATTTTACTTTGTGTTAATTCATACCTTCAATTGGCTCATTCTTCTTAGCATATTCACTGATTCCCAATTGAATGCAGTTGAGAACATCTGTTTTGACCCAAATTGTGGCCAACATGACGCAGTCATAGTATTGGGAGAAATAATCCCTTTTTCTCGGTGAGTTGTACCTTTTGTTAATCCGGCACTGAAATTGATTTTTTTTAAATCTTAAATCAGTATTAAATCTCACCATCAATAGGTTGACACTTTCTCGAAATATTTTGAAATCTTCTTGTTTTCTCTCGTTTTTGGGATCCTCCATTCGTCTTCGTGCCAAACCGAAAAAAAGCTTCAGATTCTTCAATAATTCTTCAAACACCGACGCATTTTGCATTTGTTTTCTCAGTTCCAAATAGTCCAAAAACTTGTGGATCTGTTCCAAACAAGAGCCCTCCTCATTTTGCATTGGTTCTCGAAGAAGTTGATCCGCGAATGCATTGTGTGTTTCATTTTCTGCAGAGTCCAAGAAACGACGAGCAGCAACAACCCAATTCTGATCGTTTTCCAACACCATCGACAGCAAAGGTGGGGCGTTCTGAAAAAAAATAATATTTGGGATTTTTAATTGGCAAT</canonical>
            <polymorphic>TTTTCTCAATTCCTCGTTAGCCGGAATCTCGAAGATCTTCTGCACTGTTTGGTAGAGCCCTTGAAGAACCTCATCTGGGAATCTCTGAGAGGCTTGGATGTAATTCTGAAATGAAAATTGCAGTAGAAATTAAGTTCTCTCTATTCTTCTCACCTCCAATACAAGCTCACGGATTTCATTGGCCATTGATGGGTGCTGCGTGAAAAATTGAGGATATCCCGTGTGAAATGCTAGAAGAAGTTTTAAGTAGTGATTGACGTTGGGCAGATAGTAATCATTGCCAAAATGATCCCGTGAGTTCTTGAAGGGAATATTTACCGCAGACCTGATCATATTCGAGATGATCATGAACAGAGACAAATAATCTGTAATAAAACATTTACTTTAAATTTTACTTTGTGTTAATTCATACCTTCAATTGGCTCATTCTTCTTAGCATATTCACTGATTCCCAATTGAATGCAGTTGAGAACATCTGTTTTGACCCAAATTGTGGCCARCATGACGCAGTCATAGTATTGGGAGAAATAATCCCTTTTTCTCGGTGAGTTGTACCTTTTGTTAATCCGGCACTGAAATTGATTTTTTTTAAATCTTAAATCAGTATTAAATCTCACCATCAATAGGTTGACACTTTCTCGAAATATTTTGAAATCTTCTTGTTTTCTCTCGTTTTTGGGATCCTCCATTCGTCTTCGTGCCAAACCGAAAAAAAGCTTCAGATTCTTCAATAATTCTTCAAACACCGACGCATTTTGCATTTGTTTTCTCAGTTCCAAATAGTCCAAAAACTTGTGGATCTGTTCCAAACAAGAGCCCTCCTCATTTTGCATTGGTTCTCGAAGAAGTTGATCCGCGAATGCATTGTGTGTTTCATTTTCTGCAGAGTCCAAGAAACGACGAGCAGCAACAACCCAATTCTGATCGTTTTCCAACACCATCGACAGCAAAGGTGGGGCGTTCTGAAAAAAAATAATATTTGGGATTTTTAATTGGCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCATTCTTCTTAGCATATTCA</pcr_primer_p1>
		<pcr_primer_p2>GAGAGAAAACAAGAAGATTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTCATTCTTCTTAGCATATTCACTGATTCCCAATTGAATGCAGTTGAGAACATCTGTTTTGACCCAAATTGTGGCCAACATGACGCAGTCATAGTATTGGGAGAAATAATCCCTTTTTCTCGGTGAGTTGTACCTTTTGTTAATCCGGCACTGAAATTGATTTTTTTTAAATCTTAAATCAGTATTAAATCTCACCATCAATAGGTTGACACTTTCTCGAAATATTTTGAAATCTTCTTGTTTTCTCTC</canonical_amplicon>
		<polymorphic_amplicon>GCTCATTCTTCTTAGCATATTCACTGATTCCCAATTGAATGCAGTTGAGAACATCTGTTTTGACCCAAATTGTGGCCARCATGACGCAGTCATAGTATTGGGAGAAATAATCCCTTTTTCTCGGTGAGTTGTACCTTTTGTTAATCCGGCACTGAAATTGATTTTTTTTAAATCTTAAATCAGTATTAAATCTCACCATCAATAGGTTGACACTTTCTCGAAATATTTTGAAATCTTCTTGTTTTCTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20694</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1363141</contig_pos>
        <strand>+</strand>
        <context>TTAGAGATAT[A/T]TGTCTCCTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATCTTGGTGGAGCTGAGGAATTCGCTGATTTCACTGCAGTTAGAGATAT</left_flank>
        <right_flank>TGTCTCCTCCTGAAAAGGAAACCAATGATTTCAGAGTTTGTGATGTCGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCGCACACGGTTGTTGATTTTAATATCAATTGATTCTTATTGGAGGTTGTAGGGCTTGCAGAAATTTATCAGTTTTTATGTTTTCTTGCCCGCAATTTCAGTTTTTAACCAAAATATCATACGGCCCGTGTCGGTCCGGCGACAAGAACAAAAACTCAGTTTTACGAATTTATTTTAGATCCTTTTTTTGAAAATACGTATGAATGATTTCTCCAGAAGAGTATTTGTATAGAAAAACGTAACAGCTCACCAATAGTGTTTTTAAGCTTTGGATTGCTGCAATGGACATCAACTGAATCCGATTGTTCCACGCTTCTATTGAACCCTGCTCCTTTTCCACTTGTTTCTCAAGTTCTTTCAACTTGCTTATCTGTAGCTCCTTCTGGTGCTGAACTTTGCTCATGAAGTTCGAGAAGAAATTGACGACATGTCGGCATGCGTTCTCGGGCATCTTGGTGGAGCTGAGGAATTCGCTGATTTCACTGCAGTTAGAGATATTTGTCTCCTCCTGAAAAGGAAACCAATGATTTCAGAGTTTGTGATGTCGAAAAATCAAAAATTACCGTCGCATTAACAGCGTTGTTGAGAAGAGAGAGACAAATCTCATCGACACTGGGTTGGGCCATTTTTTCTGGAAAAAATTTGTTTCTAAAAAATGAGAATAGTGAGACACGGACATGAAGAATCTTAAGAAAAACCAATTGACAGTTTGAAACGTGGCATAACACATTTTTCGTTTAAATTGAGAATTTTCTAAAATGCGGTGCTTTACAAAAAGTTCATAGTCAACTCGAAAAAACGCGAATTTTCAAAACAAAAGTCATTCAAAAAAAATTTTCCTAAAATGATTTCTTTTATTCCACCTTAGTGTAAGTTCTTACTTAAATTCAAAAAAAGAATCGATGTTCATTAGAGCAGATTTGCAACATGGCCTAAGTTTTCGACTAAAAACTTCGGCCAGAAGAAAAAAAAAGTCGAAAAAGCCATGGATTCGCGTAA</canonical>
            <polymorphic>CCCGCACACGGTTGTTGATTTTAATATCAATTGATTCTTATTGGAGGTTGTAGGGCTTGCAGAAATTTATCAGTTTTTATGTTTTCTTGCCCGCAATTTCAGTTTTTAACCAAAATATCATACGGCCCGTGTCGGTCCGGCGACAAGAACAAAAACTCAGTTTTACGAATTTATTTTAGATCCTTTTTTTGAAAATACGTATGAATGATTTCTCCAGAAGAGTATTTGTATAGAAAAACGTAACAGCTCACCAATAGTGTTTTTAAGCTTTGGATTGCTGCAATGGACATCAACTGAATCCGATTGTTCCACGCTTCTATTGAACCCTGCTCCTTTTCCACTTGTTTCTCAAGTTCTTTCAACTTGCTTATCTGTAGCTCCTTCTGGTGCTGAACTTTGCTCATGAAGTTCGAGAAGAAATTGACGACATGTCGGCATGCGTTCTCGGGCATCTTGGTGGAGCTGAGGAATTCGCTGATTTCACTGCAGTTAGAGATATWTGTCTCCTCCTGAAAAGGAAACCAATGATTTCAGAGTTTGTGATGTCGAAAAATCAAAAATTACCGTCGCATTAACAGCGTTGTTGAGAAGAGAGAGACAAATCTCATCGACACTGGGTTGGGCCATTTTTTCTGGAAAAAATTTGTTTCTAAAAAATGAGAATAGTGAGACACGGACATGAAGAATCTTAAGAAAAACCAATTGACAGTTTGAAACGTGGCATAACACATTTTTCGTTTAAATTGAGAATTTTCTAAAATGCGGTGCTTTACAAAAAGTTCATAGTCAACTCGAAAAAACGCGAATTTTCAAAACAAAAGTCATTCAAAAAAAATTTTCCTAAAATGATTTCTTTTATTCCACCTTAGTGTAAGTTCTTACTTAAATTCAAAAAAAGAATCGATGTTCATTAGAGCAGATTTGCAACATGGCCTAAGTTTTCGACTAAAAACTTCGGCCAGAAGAAAAAAAAAGTCGAAAAAGCCATGGATTCGCGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTCAACTTGCTTATCTGTAGC</pcr_primer_p1>
		<pcr_primer_p2>GATTTGTCTCTCTCTTCTCAACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTTCAACTTGCTTATCTGTAGCTCCTTCTGGTGCTGAACTTTGCTCATGAAGTTCGAGAAGAAATTGACGACATGTCGGCATGCGTTCTCGGGCATCTTGGTGGAGCTGAGGAATTCGCTGATTTCACTGCAGTTAGAGATATTTGTCTCCTCCTGAAAAGGAAACCAATGATTTCAGAGTTTGTGATGTCGAAAAATCAAAAATTACCGTCGCATTAACAGCGTTGTTGAGAAGAGAGAGACAAATC</canonical_amplicon>
		<polymorphic_amplicon>CTTTCAACTTGCTTATCTGTAGCTCCTTCTGGTGCTGAACTTTGCTCATGAAGTTCGAGAAGAAATTGACGACATGTCGGCATGCGTTCTCGGGCATCTTGGTGGAGCTGAGGAATTCGCTGATTTCACTGCAGTTAGAGATATWTGTCTCCTCCTGAAAAGGAAACCAATGATTTCAGAGTTTGTGATGTCGAAAAATCAAAAATTACCGTCGCATTAACAGCGTTGTTGAGAAGAGAGAGACAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20695</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>14598</contig_pos>
        <strand>+</strand>
        <context>ATTGAACCCT[A/G]TCATATTCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCATAGTTCCAGAAACCGTTCAAAGTAAGACATTTCCCTATTGAACCCT</left_flank>
        <right_flank>TCATATTCTTAAACCATTGCAGTGCGGCGTTGAACAGTGACACTGAGAAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGTTACAAGTCCGTCAGCTGTTATGAAGTCTGCAACACCGTCTTCCACATCTGCTGGCCCATCTGTATCATCTATTGCAACTCGAGGTCGTATACCAAGTACAAATCCAACTCCAGAAGCTGGGAACTCTAGTCGTGGACCTTCCACAAGAAGAACCACGCGCTCATCTGTTCCTTCTGTAGATCGTGAGCTTAGATGTAGGTCACAAAATCGTCTTATTTGTTTTCAAAATTAATCGTTTAGACCTCCCAGCCACAACGTCTTCTCGACAGACAACCACTCCAGTGACCACTAGTGGTCGTACCCGTCCAGTTGCACCACGAAAAAGTTCGCGAATCAGTGAGATGTCGAGTCGGCGCTCAGATTCAAGCGCTACCACTGCCTCTACGGCTGCTGCATGCAGAGCGGCTCTATTCACACAACCAGAAAGACCGCACACTCGAGCAACGCATAGTTCCAGAAACCGTTCAAAGTAAGACATTTCCCTATTGAACCCTATCATATTCTTAAACCATTGCAGTGCGGCGTTGAACAGTGACACTGAGAACTCGAACGCAGTCAACACGAGATCCAGGGACACAGGTGGCAGCCGGGGATCCGCATCGTCTCAGAGGGTATAATGGGTGGTACACACATAACATAGTACTAAAATTTTCGCCTTTAGACCAACCCAGTGCGCTCCTCAATCAGAATTGCTGATGCTGCAGCAAATAAGAATTCCAAAAATGCAAATCAAAGGAAGCGAAATGAAAAGCAGCCATTGGTTTCTAGAAACTCGAATTTAGCGCGCAGCTTGTCGGGTTCCTCCAATTCTGTAAGCAGTAAGGAGCAAGATTTTCACTCTCTTGATGTTTCAGGTGGCATCCACAGGAAGCGATCGGTTGTCAGACGACGGCCTGTCTCAGATGAATGCTCCAATGTCTTCAGTGGCTTCCTCGTTGAATAACGATGACCTAGGAGATGCAGTAGAAGTTTCATACGACGATAGATACAGTATG</canonical>
            <polymorphic>GAAGTTACAAGTCCGTCAGCTGTTATGAAGTCTGCAACACCGTCTTCCACATCTGCTGGCCCATCTGTATCATCTATTGCAACTCGAGGTCGTATACCAAGTACAAATCCAACTCCAGAAGCTGGGAACTCTAGTCGTGGACCTTCCACAAGAAGAACCACGCGCTCATCTGTTCCTTCTGTAGATCGTGAGCTTAGATGTAGGTCACAAAATCGTCTTATTTGTTTTCAAAATTAATCGTTTAGACCTCCCAGCCACAACGTCTTCTCGACAGACAACCACTCCAGTGACCACTAGTGGTCGTACCCGTCCAGTTGCACCACGAAAAAGTTCGCGAATCAGTGAGATGTCGAGTCGGCGCTCAGATTCAAGCGCTACCACTGCCTCTACGGCTGCTGCATGCAGAGCGGCTCTATTCACACAACCAGAAAGACCGCACACTCGAGCAACGCATAGTTCCAGAAACCGTTCAAAGTAAGACATTTCCCTATTGAACCCTRTCATATTCTTAAACCATTGCAGTGCGGCGTTGAACAGTGACACTGAGAACTCGAACGCAGTCAACACGAGATCCAGGGACACAGGTGGCAGCCGGGGATCCGCATCGTCTCAGAGGGTATAATGGGTGGTACACACATAACATAGTACTAAAATTTTCGCCTTTAGACCAACCCAGTGCGCTCCTCAATCAGAATTGCTGATGCTGCAGCAAATAAGAATTCCAAAAATGCAAATCAAAGGAAGCGAAATGAAAAGCAGCCATTGGTTTCTAGAAACTCGAATTTAGCGCGCAGCTTGTCGGGTTCCTCCAATTCTGTAAGCAGTAAGGAGCAAGATTTTCACTCTCTTGATGTTTCAGGTGGCATCCACAGGAAGCGATCGGTTGTCAGACGACGGCCTGTCTCAGATGAATGCTCCAATGTCTTCAGTGGCTTCCTCGTTGAATAACGATGACCTAGGAGATGCAGTAGAAGTTTCATACGACGATAGATACAGTATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATTCACACAACCAGAAAGAC</pcr_primer_p1>
		<pcr_primer_p2>AAGGCGAAAATTTTAGTACTATGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCTATTCACACAACCAGAAAGACCGCACACTCGAGCAACGCATAGTTCCAGAAACCGTTCAAAGTAAGACATTTCCCTATTGAACCCTATCATATTCTTAAACCATTGCAGTGCGGCGTTGAACAGTGACACTGAGAACTCGAACGCAGTCAACACGAGATCCAGGGACACAGGTGGCAGCCGGGGATCCGCATCGTCTCAGAGGGTATAATGGGTGGTACACACATAACATAGTACTAAAATTTTCGCCTT</canonical_amplicon>
		<polymorphic_amplicon>TCTATTCACACAACCAGAAAGACCGCACACTCGAGCAACGCATAGTTCCAGAAACCGTTCAAAGTAAGACATTTCCCTATTGAACCCTRTCATATTCTTAAACCATTGCAGTGCGGCGTTGAACAGTGACACTGAGAACTCGAACGCAGTCAACACGAGATCCAGGGACACAGGTGGCAGCCGGGGATCCGCATCGTCTCAGAGGGTATAATGGGTGGTACACACATAACATAGTACTAAAATTTTCGCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20696</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>51334</contig_pos>
        <strand>+</strand>
        <context>CATGACTATC[C/T]GGCTGAGCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAGAAATGCTTCACATCCTCAAAATACCGTATACGATCCATGACTATC</left_flank>
        <right_flank>GGCTGAGCATTCGCAGCTACACATTTCAAAAGTTCGCATTTCTTCGTGGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTGAACTATTCAATAGATTATGGAATGTTGAGCGTAATTAGAGAGAAAAAGGAAATGAGAGTTATGAGCTTTAAATTAATAAAAAAAAGTTTTTAAATTAACAATATATTAATAAAATTAAAGTTTAAAAATCTTCCTTCGCACCGCATTCGTCGATTCTTCACTTATCATCTGAAAATGGGCGAAGAGTTGACTATAGAATACGGACTTCCGCAAAAAACAGCTACGATTTTTTGAATTGCATTTATTATAAAAACATTAGCTGTTTTCGGTTTTTATGCGCCTTGAAGTACAATTTCAGCCTAAAAGTATTACTAACCATTTCATCGAATTTCCGAATAACTCTTTTACTTTTAACTGGCAATTCTTTAGTTGAAAGACAATAATTCCCCTTGCTATTCGAACGGCTAGATGCTGTGCTCAAGTAGGTAACCTGGAAATTGGGGTTTCAGAAATGCTTCACATCCTCAAAATACCGTATACGATCCATGACTATCCGGCTGAGCATTCGCAGCTACACATTTCAAAAGTTCGCATTTCTTCGTGGCCGATCCAATTGTTTCCTTCTCTCCTACAGTAATCTTCTCTCCCGTGCACATCTAGAATCATATCTTTAACTCTTTGGCCTGAAACTATTTCCTATACCTGGTTATAATAGGTGCTCAATGTTCGCGTGGCATTCGTTGTCTCCTTCTCAGGCGGTCCTGGAAGGTAGGTGTCTTCTGTCGATGCAGAACTAGGGGCCACCTGGAATTTGGTTTGTAAAAAATTGGTGCAAAATGAAAGTTGTATACTTGAATCTGTTGTTTTTGAGGTGGGGAAGCTGGTTGTGGTTGTGTTGTATGTTGTTCATCTGTACTGGTTATACTCTGGAATGGATCCGGAGGACTTGGTGGGTAAGATTCTTGAGCTGGTGGAGCAACCACAATCGATGGAGTATGAGAGACAGAAACATGTTCGATGTACTTCAGAGGGTCTAAGACAGTGTTCGCTGGATC</canonical>
            <polymorphic>ATTTGAACTATTCAATAGATTATGGAATGTTGAGCGTAATTAGAGAGAAAAAGGAAATGAGAGTTATGAGCTTTAAATTAATAAAAAAAAGTTTTTAAATTAACAATATATTAATAAAATTAAAGTTTAAAAATCTTCCTTCGCACCGCATTCGTCGATTCTTCACTTATCATCTGAAAATGGGCGAAGAGTTGACTATAGAATACGGACTTCCGCAAAAAACAGCTACGATTTTTTGAATTGCATTTATTATAAAAACATTAGCTGTTTTCGGTTTTTATGCGCCTTGAAGTACAATTTCAGCCTAAAAGTATTACTAACCATTTCATCGAATTTCCGAATAACTCTTTTACTTTTAACTGGCAATTCTTTAGTTGAAAGACAATAATTCCCCTTGCTATTCGAACGGCTAGATGCTGTGCTCAAGTAGGTAACCTGGAAATTGGGGTTTCAGAAATGCTTCACATCCTCAAAATACCGTATACGATCCATGACTATCYGGCTGAGCATTCGCAGCTACACATTTCAAAAGTTCGCATTTCTTCGTGGCCGATCCAATTGTTTCCTTCTCTCCTACAGTAATCTTCTCTCCCGTGCACATCTAGAATCATATCTTTAACTCTTTGGCCTGAAACTATTTCCTATACCTGGTTATAATAGGTGCTCAATGTTCGCGTGGCATTCGTTGTCTCCTTCTCAGGCGGTCCTGGAAGGTAGGTGTCTTCTGTCGATGCAGAACTAGGGGCCACCTGGAATTTGGTTTGTAAAAAATTGGTGCAAAATGAAAGTTGTATACTTGAATCTGTTGTTTTTGAGGTGGGGAAGCTGGTTGTGGTTGTGTTGTATGTTGTTCATCTGTACTGGTTATACTCTGGAATGGATCCGGAGGACTTGGTGGGTAAGATTCTTGAGCTGGTGGAGCAACCACAATCGATGGAGTATGAGAGACAGAAACATGTTCGATGTACTTCAGAGGGTCTAAGACAGTGTTCGCTGGATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 384 117</canonical_bands>
                <polymorphic_bands>883 117</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTTACTTTTAACTGGCAATTC</pcr_primer_p1>
		<pcr_primer_p2>GGGAGAGAAGATTACTGTAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTTTTACTTTTAACTGGCAATTCTTTAGTTGAAAGACAATAATTCCCCTTGCTATTCGAACGGCTAGATGCTGTGCTCAAGTAGGTAACCTGGAAATTGGGGTTTCAGAAATGCTTCACATCCTCAAAATACCGTATACGATCCATGACTATCCGGCTGAGCATTCGCAGCTACACATTTCAAAAGTTCGCATTTCTTCGTGGCCGATCCAATTGTTTCCTTCTCTCCTACAGTAATCTTCTCTCCC</canonical_amplicon>
		<polymorphic_amplicon>CTTTTACTTTTAACTGGCAATTCTTTAGTTGAAAGACAATAATTCCCCTTGCTATTCGAACGGCTAGATGCTGTGCTCAAGTAGGTAACCTGGAAATTGGGGTTTCAGAAATGCTTCACATCCTCAAAATACCGTATACGATCCATGACTATCYGGCTGAGCATTCGCAGCTACACATTTCAAAAGTTCGCATTTCTTCGTGGCCGATCCAATTGTTTCCTTCTCTCCTACAGTAATCTTCTCTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20697</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>52925</contig_pos>
        <strand>+</strand>
        <context>AGGAAGTTGA[A/G]CGAAAAGATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTGTAGAAAATAAATTAAAATTTGAGCCTGAAAATAAAGGAAGTTGA</left_flank>
        <right_flank>CGAAAAGATACATGAAAAATTGAGAGCTGAAAATTTTATAAACTTGAGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAGTATGTTGCAAATGAGAAAAACGCTTTGCGACATTTCTAAATTACGTGAAACGAATAGAATAGCTTCAGAGAAAGGGGTTCAGAGGAAGAATTTGGAGGGATGGAATGGCATGAGGAATGATATGCAATCAGAAGATAAGATGTGGACATCCCTCCTCCCATCCGGGAATGGGCCGAGTTTAATGATGAAATGGAAGAGAGGAAGATTGTTCAGGTTTTGAAGATTAATTAAAGAAAATGGAAATAGAGAGAAAAAGAGAAATGAATTAAGAAAACGAATTAAGAAAAAACAGCTGACTATGGAAATAGAGAGAGAGAGAGAAAGGGATGAAATGAGAATTTCTCTATCACCGCCAAAGTGTGAAATTAGTCAATTTAGTACAAGAATCATATCAATGAAGATAGTTTGAAATTTAAGAACAATCAGATTGAAAAGGAGAAGTAAAATTTGTAGAAAATAAATTAAAATTTGAGCCTGAAAATAAAGGAAGTTGAGCGAAAAGATACATGAAAAATTGAGAGCTGAAAATTTTATAAACTTGAGAATCCTTCCTTTTGACTTCTTATTTCTCTGAATCACAATTTTTGAATTCTGGAACCTTCAAAAGTCTGGAATTCGACTTCTGAACAATCTCTGAGACTTGAAAATGGAGTACTGTAAACACTAATAGAATGCCCTCCAAACCGTCAACTCACCATCAGTTGTTAAGTTTTTGATATCTTTCACAGTAATAGACATAAATTTGATCAAAGTTGAAAGTTAGAGAGCAATTCTATTAGAGTGTTTACGGTACTTTCAGAATCTTGGAAGTTTTCGGGATGCAGGCTCAGGAAACATTCTCGAGTTGTTCTTTTTTTTCTGAGTTTCTGAAAACTTCAGACTCGAGAACATTTCCTAATTACTAGCGAGTTTTTGAAATAACAAAATTTAAAACTTCAGAGGCCGAAAATTCAAAAGTCTGAAACTTCTGAATCTAAACATTTTAGAAACTCAGA</canonical>
            <polymorphic>AACAGTATGTTGCAAATGAGAAAAACGCTTTGCGACATTTCTAAATTACGTGAAACGAATAGAATAGCTTCAGAGAAAGGGGTTCAGAGGAAGAATTTGGAGGGATGGAATGGCATGAGGAATGATATGCAATCAGAAGATAAGATGTGGACATCCCTCCTCCCATCCGGGAATGGGCCGAGTTTAATGATGAAATGGAAGAGAGGAAGATTGTTCAGGTTTTGAAGATTAATTAAAGAAAATGGAAATAGAGAGAAAAAGAGAAATGAATTAAGAAAACGAATTAAGAAAAAACAGCTGACTATGGAAATAGAGAGAGAGAGAGAAAGGGATGAAATGAGAATTTCTCTATCACCGCCAAAGTGTGAAATTAGTCAATTTAGTACAAGAATCATATCAATGAAGATAGTTTGAAATTTAAGAACAATCAGATTGAAAAGGAGAAGTAAAATTTGTAGAAAATAAATTAAAATTTGAGCCTGAAAATAAAGGAAGTTGARCGAAAAGATACATGAAAAATTGAGAGCTGAAAATTTTATAAACTTGAGAATCCTTCCTTTTGACTTCTTATTTCTCTGAATCACAATTTTTGAATTCTGGAACCTTCAAAAGTCTGGAATTCGACTTCTGAACAATCTCTGAGACTTGAAAATGGAGTACTGTAAACACTAATAGAATGCCCTCCAAACCGTCAACTCACCATCAGTTGTTAAGTTTTTGATATCTTTCACAGTAATAGACATAAATTTGATCAAAGTTGAAAGTTAGAGAGCAATTCTATTAGAGTGTTTACGGTACTTTCAGAATCTTGGAAGTTTTCGGGATGCAGGCTCAGGAAACATTCTCGAGTTGTTCTTTTTTTTCTGAGTTTCTGAAAACTTCAGACTCGAGAACATTTCCTAATTACTAGCGAGTTTTTGAAATAACAAAATTTAAAACTTCAGAGGCCGAAAATTCAAAAGTCTGAAACTTCTGAATCTAAACATTTTAGAAACTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAGAGAGAAAGGGATGAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGAAGGATTCTCAAGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAGAGAGAGAAAGGGATGAAATGAGAATTTCTCTATCACCGCCAAAGTGTGAAATTAGTCAATTTAGTACAAGAATCATATCAATGAAGATAGTTTGAAATTTAAGAACAATCAGATTGAAAAGGAGAAGTAAAATTTGTAGAAAATAAATTAAAATTTGAGCCTGAAAATAAAGGAAGTTGAGCGAAAAGATACATGAAAAATTGAGAGCTGAAAATTTTATAAACTTGAGAATCCTTCCTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAGAGAGAGAAAGGGATGAAATGAGAATTTCTCTATCACCGCCAAAGTGTGAAATTAGTCAATTTAGTACAAGAATCATATCAATGAAGATAGTTTGAAATTTAAGAACAATCAGATTGAAAAGGAGAAGTAAAATTTGTAGAAAATAAATTAAAATTTGAGCCTGAAAATAAAGGAAGTTGARCGAAAAGATACATGAAAAATTGAGAGCTGAAAATTTTATAAACTTGAGAATCCTTCCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20698</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>52900</contig_pos>
        <strand>+</strand>
        <context>AATTAAAATT[G/T]GAGCCTGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAATCAGATTGAAAAGGAGAAGTAAAATTTGTAGAAAATAAATTAAAATT</left_flank>
        <right_flank>GAGCCTGAAAATAAAGGAAGTTGAGCGAAAAGATACATGAAAAATTGAGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAGAAGATTCTCGAAGCAGCAGCAACAGTATGTTGCAAATGAGAAAAACGCTTTGCGACATTTCTAAATTACGTGAAACGAATAGAATAGCTTCAGAGAAAGGGGTTCAGAGGAAGAATTTGGAGGGATGGAATGGCATGAGGAATGATATGCAATCAGAAGATAAGATGTGGACATCCCTCCTCCCATCCGGGAATGGGCCGAGTTTAATGATGAAATGGAAGAGAGGAAGATTGTTCAGGTTTTGAAGATTAATTAAAGAAAATGGAAATAGAGAGAAAAAGAGAAATGAATTAAGAAAACGAATTAAGAAAAAACAGCTGACTATGGAAATAGAGAGAGAGAGAGAAAGGGATGAAATGAGAATTTCTCTATCACCGCCAAAGTGTGAAATTAGTCAATTTAGTACAAGAATCATATCAATGAAGATAGTTTGAAATTTAAGAACAATCAGATTGAAAAGGAGAAGTAAAATTTGTAGAAAATAAATTAAAATTTGAGCCTGAAAATAAAGGAAGTTGAGCGAAAAGATACATGAAAAATTGAGAGCTGAAAATTTTATAAACTTGAGAATCCTTCCTTTTGACTTCTTATTTCTCTGAATCACAATTTTTGAATTCTGGAACCTTCAAAAGTCTGGAATTCGACTTCTGAACAATCTCTGAGACTTGAAAATGGAGTACTGTAAACACTAATAGAATGCCCTCCAAACCGTCAACTCACCATCAGTTGTTAAGTTTTTGATATCTTTCACAGTAATAGACATAAATTTGATCAAAGTTGAAAGTTAGAGAGCAATTCTATTAGAGTGTTTACGGTACTTTCAGAATCTTGGAAGTTTTCGGGATGCAGGCTCAGGAAACATTCTCGAGTTGTTCTTTTTTTTCTGAGTTTCTGAAAACTTCAGACTCGAGAACATTTCCTAATTACTAGCGAGTTTTTGAAATAACAAAATTTAAAACTTCAGAGGCCGAAAATTCAAAAGTCTGAAACTTCTG</canonical>
            <polymorphic>TCCAGAAGATTCTCGAAGCAGCAGCAACAGTATGTTGCAAATGAGAAAAACGCTTTGCGACATTTCTAAATTACGTGAAACGAATAGAATAGCTTCAGAGAAAGGGGTTCAGAGGAAGAATTTGGAGGGATGGAATGGCATGAGGAATGATATGCAATCAGAAGATAAGATGTGGACATCCCTCCTCCCATCCGGGAATGGGCCGAGTTTAATGATGAAATGGAAGAGAGGAAGATTGTTCAGGTTTTGAAGATTAATTAAAGAAAATGGAAATAGAGAGAAAAAGAGAAATGAATTAAGAAAACGAATTAAGAAAAAACAGCTGACTATGGAAATAGAGAGAGAGAGAGAAAGGGATGAAATGAGAATTTCTCTATCACCGCCAAAGTGTGAAATTAGTCAATTTAGTACAAGAATCATATCAATGAAGATAGTTTGAAATTTAAGAACAATCAGATTGAAAAGGAGAAGTAAAATTTGTAGAAAATAAATTAAAATTKGAGCCTGAAAATAAAGGAAGTTGAGCGAAAAGATACATGAAAAATTGAGAGCTGAAAATTTTATAAACTTGAGAATCCTTCCTTTTGACTTCTTATTTCTCTGAATCACAATTTTTGAATTCTGGAACCTTCAAAAGTCTGGAATTCGACTTCTGAACAATCTCTGAGACTTGAAAATGGAGTACTGTAAACACTAATAGAATGCCCTCCAAACCGTCAACTCACCATCAGTTGTTAAGTTTTTGATATCTTTCACAGTAATAGACATAAATTTGATCAAAGTTGAAAGTTAGAGAGCAATTCTATTAGAGTGTTTACGGTACTTTCAGAATCTTGGAAGTTTTCGGGATGCAGGCTCAGGAAACATTCTCGAGTTGTTCTTTTTTTTCTGAGTTTCTGAAAACTTCAGACTCGAGAACATTTCCTAATTACTAGCGAGTTTTTGAAATAACAAAATTTAAAACTTCAGAGGCCGAAAATTCAAAAGTCTGAAACTTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>248 185 127 118 73 61 61 35 25 23 23 21</canonical_bands>
                <polymorphic_bands>248 185 127 118 82 73 61 35 25 23 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACAGCTGACTATGGAAATAGA</pcr_primer_p1>
		<pcr_primer_p2>AAATTTTCAGCTCTCAATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAACAGCTGACTATGGAAATAGAGAGAGAGAGAGAAAGGGATGAAATGAGAATTTCTCTATCACCGCCAAAGTGTGAAATTAGTCAATTTAGTACAAGAATCATATCAATGAAGATAGTTTGAAATTTAAGAACAATCAGATTGAAAAGGAGAAGTAAAATTTGTAGAAAATAAATTAAAATTTGAGCCTGAAAATAAAGGAAGTTGAGCGAAAAGATACATGAAAAATTGAGAGCTGAAAATTT</canonical_amplicon>
		<polymorphic_amplicon>AAACAGCTGACTATGGAAATAGAGAGAGAGAGAGAAAGGGATGAAATGAGAATTTCTCTATCACCGCCAAAGTGTGAAATTAGTCAATTTAGTACAAGAATCATATCAATGAAGATAGTTTGAAATTTAAGAACAATCAGATTGAAAAGGAGAAGTAAAATTTGTAGAAAATAAATTAAAATTKGAGCCTGAAAATAAAGGAAGTTGAGCGAAAAGATACATGAAAAATTGAGAGCTGAAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20699</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>52880</contig_pos>
        <strand>+</strand>
        <context>AGTAAAATTT[A/G]TAGAAAATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATAGTTTGAAATTTAAGAACAATCAGATTGAAAAGGAGAAGTAAAATTT</left_flank>
        <right_flank>TAGAAAATAAATTAAAATTTGAGCCTGAAAATAAAGGAAGTTGAGCGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAACCCAGTTGGCAAACATCCAGAAGATTCTCGAAGCAGCAGCAACAGTATGTTGCAAATGAGAAAAACGCTTTGCGACATTTCTAAATTACGTGAAACGAATAGAATAGCTTCAGAGAAAGGGGTTCAGAGGAAGAATTTGGAGGGATGGAATGGCATGAGGAATGATATGCAATCAGAAGATAAGATGTGGACATCCCTCCTCCCATCCGGGAATGGGCCGAGTTTAATGATGAAATGGAAGAGAGGAAGATTGTTCAGGTTTTGAAGATTAATTAAAGAAAATGGAAATAGAGAGAAAAAGAGAAATGAATTAAGAAAACGAATTAAGAAAAAACAGCTGACTATGGAAATAGAGAGAGAGAGAGAAAGGGATGAAATGAGAATTTCTCTATCACCGCCAAAGTGTGAAATTAGTCAATTTAGTACAAGAATCATATCAATGAAGATAGTTTGAAATTTAAGAACAATCAGATTGAAAAGGAGAAGTAAAATTTGTAGAAAATAAATTAAAATTTGAGCCTGAAAATAAAGGAAGTTGAGCGAAAAGATACATGAAAAATTGAGAGCTGAAAATTTTATAAACTTGAGAATCCTTCCTTTTGACTTCTTATTTCTCTGAATCACAATTTTTGAATTCTGGAACCTTCAAAAGTCTGGAATTCGACTTCTGAACAATCTCTGAGACTTGAAAATGGAGTACTGTAAACACTAATAGAATGCCCTCCAAACCGTCAACTCACCATCAGTTGTTAAGTTTTTGATATCTTTCACAGTAATAGACATAAATTTGATCAAAGTTGAAAGTTAGAGAGCAATTCTATTAGAGTGTTTACGGTACTTTCAGAATCTTGGAAGTTTTCGGGATGCAGGCTCAGGAAACATTCTCGAGTTGTTCTTTTTTTTCTGAGTTTCTGAAAACTTCAGACTCGAGAACATTTCCTAATTACTAGCGAGTTTTTGAAATAACAAAATTTAAAACTTCAGAGGCCGAAAAT</canonical>
            <polymorphic>CCAAACCCAGTTGGCAAACATCCAGAAGATTCTCGAAGCAGCAGCAACAGTATGTTGCAAATGAGAAAAACGCTTTGCGACATTTCTAAATTACGTGAAACGAATAGAATAGCTTCAGAGAAAGGGGTTCAGAGGAAGAATTTGGAGGGATGGAATGGCATGAGGAATGATATGCAATCAGAAGATAAGATGTGGACATCCCTCCTCCCATCCGGGAATGGGCCGAGTTTAATGATGAAATGGAAGAGAGGAAGATTGTTCAGGTTTTGAAGATTAATTAAAGAAAATGGAAATAGAGAGAAAAAGAGAAATGAATTAAGAAAACGAATTAAGAAAAAACAGCTGACTATGGAAATAGAGAGAGAGAGAGAAAGGGATGAAATGAGAATTTCTCTATCACCGCCAAAGTGTGAAATTAGTCAATTTAGTACAAGAATCATATCAATGAAGATAGTTTGAAATTTAAGAACAATCAGATTGAAAAGGAGAAGTAAAATTTRTAGAAAATAAATTAAAATTTGAGCCTGAAAATAAAGGAAGTTGAGCGAAAAGATACATGAAAAATTGAGAGCTGAAAATTTTATAAACTTGAGAATCCTTCCTTTTGACTTCTTATTTCTCTGAATCACAATTTTTGAATTCTGGAACCTTCAAAAGTCTGGAATTCGACTTCTGAACAATCTCTGAGACTTGAAAATGGAGTACTGTAAACACTAATAGAATGCCCTCCAAACCGTCAACTCACCATCAGTTGTTAAGTTTTTGATATCTTTCACAGTAATAGACATAAATTTGATCAAAGTTGAAAGTTAGAGAGCAATTCTATTAGAGTGTTTACGGTACTTTCAGAATCTTGGAAGTTTTCGGGATGCAGGCTCAGGAAACATTCTCGAGTTGTTCTTTTTTTTCTGAGTTTCTGAAAACTTCAGACTCGAGAACATTTCCTAATTACTAGCGAGTTTTTGAAATAACAAAATTTAAAACTTCAGAGGCCGAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACAGCTGACTATGGAAATAGA</pcr_primer_p1>
		<pcr_primer_p2>AAATTTTCAGCTCTCAATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAACAGCTGACTATGGAAATAGAGAGAGAGAGAGAAAGGGATGAAATGAGAATTTCTCTATCACCGCCAAAGTGTGAAATTAGTCAATTTAGTACAAGAATCATATCAATGAAGATAGTTTGAAATTTAAGAACAATCAGATTGAAAAGGAGAAGTAAAATTTGTAGAAAATAAATTAAAATTTGAGCCTGAAAATAAAGGAAGTTGAGCGAAAAGATACATGAAAAATTGAGAGCTGAAAATTT</canonical_amplicon>
		<polymorphic_amplicon>AAACAGCTGACTATGGAAATAGAGAGAGAGAGAGAAAGGGATGAAATGAGAATTTCTCTATCACCGCCAAAGTGTGAAATTAGTCAATTTAGTACAAGAATCATATCAATGAAGATAGTTTGAAATTTAAGAACAATCAGATTGAAAAGGAGAAGTAAAATTTRTAGAAAATAAATTAAAATTTGAGCCTGAAAATAAAGGAAGTTGAGCGAAAAGATACATGAAAAATTGAGAGCTGAAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20700</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>145906</contig_pos>
        <strand></strand>
        <context>aatttccatg[G/A]aagatataaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACTCTAATAAAAGCTGACCCTATACTTGCTCAATTATCTCAATTTCCATG</left_flank>
        <right_flank>AAGATATAAACATTTCGTCGACAGATAAATTGATCATCACACTATCATCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCAAAAAACTTTTAAGCACACATTCCGTCTCAATACCAGTTTATGAAAATTAATTTTGATTGGTATTTCCGGTTTTGGAAATAAAAAGGATGTAAAACTAATTACTGTACATGCCCAATTACAACCACTTAATCGCATTCCTTTTATGACACGAGACCATTATTTTTGTGTATGGTGTTCTGATGGAAAAAAGGGTAAAAAGAAGAAGAAGAAGAGGAAAAGAGAGTGAACAATGGGAGTATCAAATAGTTTTGTGATTGTTGCGAAAGGGCGGGAACCAACAGTTTAGTTTTTTATGACTTACGTTTTGCAAAAGGAATCATTGGAACCAACTTTTAAAGGAACTTGTAATATTACTGTATCGAATAAAACATATCTAATCTTGACAACTTCAGTAAAGAAATTATAGACTGTGGAAATCATAAAAGCTATAAAGCTATAGTAGTTACTCTAATAAAAGCTGACCCTATACTTGCTCAATTATCTCAATTTCCATGGAAGATATAAACATTTCGTCGACAGATAAATTGATCATCACACTATCATCAAACTTTTATCAGTTGAATAATTGTGATATCTTTCAAAGGAAACGAGACGATTTTCCAGGGTTTCCCAATAAATAGTTTTCGACATTGATTTTCTATAATATTTTTTTGGAAAAACTGAAATTTCTGAACCTTCGGATTTTCAGATTTTTCCCACTAATTAGTTTTTTTTCCAGCGAAGCTCACCTGTATCTAACCGGAAAAGAAAATGTCGTTTAGAAAGCTTGTCAGAATTTTCTCTAAATTCATTTTTCTCTGAAAAGGATCATTTATAGAATCGAGTATAGGATTATTTGAAACAAAAGCGGCTACCTGCAACACTGGCTGAAACTCGAATTAAATCAATCTGGAAATGTGAGATTTACGCGAGTCTTCGAGTCTTGTAAAAGATCTTATTGTAAAAGATCTTCTTGTAAAAGATCTCAAATAACGTTTAAAGGCAAAAATGTTTGT</canonical>
            <polymorphic>TTTCAAAAAACTTTTAAGCACACATTCCGTCTCAATACCAGTTTATGAAAATTAATTTTGATTGGTATTTCCGGTTTTGGAAATAAAAAGGATGTAAAACTAATTACTGTACATGCCCAATTACAACCACTTAATCGCATTCCTTTTATGACACGAGACCATTATTTTTGTGTATGGTGTTCTGATGGAAAAAAGGGTAAAAAGAAGAAGAAGAAGAGGAAAAGAGAGTGAACAATGGGAGTATCAAATAGTTTTGTGATTGTTGCGAAAGGGCGGGAACCAACAGTTTAGTTTTTTATGACTTACGTTTTGCAAAAGGAATCATTGGAACCAACTTTTAAAGGAACTTGTAATATTACTGTATCGAATAAAACATATCTAATCTTGACAACTTCAGTAAAGAAATTATAGACTGTGGAAATCATAAAAGCTATAAAGCTATAGTAGTTACTCTAATAAAAGCTGACCCTATACTTGCTCAATTATCTCAATTTCCATGRAAGATATAAACATTTCGTCGACAGATAAATTGATCATCACACTATCATCAAACTTTTATCAGTTGAATAATTGTGATATCTTTCAAAGGAAACGAGACGATTTTCCAGGGTTTCCCAATAAATAGTTTTCGACATTGATTTTCTATAATATTTTTTTGGAAAAACTGAAATTTCTGAACCTTCGGATTTTCAGATTTTTCCCACTAATTAGTTTTTTTTCCAGCGAAGCTCACCTGTATCTAACCGGAAAAGAAAATGTCGTTTAGAAAGCTTGTCAGAATTTTCTCTAAATTCATTTTTCTCTGAAAAGGATCATTTATAGAATCGAGTATAGGATTATTTGAAACAAAAGCGGCTACCTGCAACACTGGCTGAAACTCGAATTAAATCAATCTGGAAATGTGAGATTTACGCGAGTCTTCGAGTCTTGTAAAAGATCTTATTGTAAAAGATCTTCTTGTAAAAGATCTCAAATAACGTTTAAAGGCAAAAATGTTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>495 395 110</canonical_bands>
                <polymorphic_bands>605 395</polymorphic_bands>
            </assay>
            <assay>
                <site>CCATGG</site>
                <isoschizomers>
                    <enzyme>Bsp19I</enzyme>
                    <enzyme>NcoI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTTGACAACTTCAGTAAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>CGAAAACTATTTATTGGGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTTGACAACTTCAGTAAAGAAATTATAGACTGTGGAAATCATAAAAGCTATAAAGCTATAGTAGTTACTCTAATAAAAGCTGACCCTATACTTGCTCAATTATCTCAATTTCCATGGAAGATATAAACATTTCGTCGACAGATAAATTGATCATCACACTATCATCAAACTTTTATCAGTTGAATAATTGTGATATCTTTCAAAGGAAACGAGACGATTTTCCAGGGTTTCCCAATAAATAGTTTTCG</canonical_amplicon>
		<polymorphic_amplicon>ATCTTGACAACTTCAGTAAAGAAATTATAGACTGTGGAAATCATAAAAGCTATAAAGCTATAGTAGTTACTCTAATAAAAGCTGACCCTATACTTGCTCAATTATCTCAATTTCCATGRAAGATATAAACATTTCGTCGACAGATAAATTGATCATCACACTATCATCAAACTTTTATCAGTTGAATAATTGTGATATCTTTCAAAGGAAACGAGACGATTTTCCAGGGTTTCCCAATAAATAGTTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20702</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>146004</contig_pos>
        <strand>+</strand>
        <context>ggaaacgaga[A/C]GATTTTCCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCAAACTTTTATCAGTTGAATAATTGTGATATCTTTCAAAGGAAACGAGA</left_flank>
        <right_flank>GATTTTCCAGGGTTTCCCAATAAATAGTTTTCGACATTGATTTTCTATAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTAATTACTGTACATGCCCAATTACAACCACTTAATCGCATTCCTTTTATGACACGAGACCATTATTTTTGTGTATGGTGTTCTGATGGAAAAAAGGGTAAAAAGAAGAAGAAGAAGAGGAAAAGAGAGTGAACAATGGGAGTATCAAATAGTTTTGTGATTGTTGCGAAAGGGCGGGAACCAACAGTTTAGTTTTTTATGACTTACGTTTTGCAAAAGGAATCATTGGAACCAACTTTTAAAGGAACTTGTAATATTACTGTATCGAATAAAACATATCTAATCTTGACAACTTCAGTAAAGAAATTATAGACTGTGGAAATCATAAAAGCTATAAAGCTATAGTAGTTACTCTAATAAAAGCTGACCCTATACTTGCTCAATTATCTCAATTTCCATGGAAGATATAAACATTTCGTCGACAGATAAATTGATCATCACACTATCATCAAACTTTTATCAGTTGAATAATTGTGATATCTTTCAAAGGAAACGAGACGATTTTCCAGGGTTTCCCAATAAATAGTTTTCGACATTGATTTTCTATAATATTTTTTTGGAAAAACTGAAATTTCTGAACCTTCGGATTTTCAGATTTTTCCCACTAATTAGTTTTTTTTCCAGCGAAGCTCACCTGTATCTAACCGGAAAAGAAAATGTCGTTTAGAAAGCTTGTCAGAATTTTCTCTAAATTCATTTTTCTCTGAAAAGGATCATTTATAGAATCGAGTATAGGATTATTTGAAACAAAAGCGGCTACCTGCAACACTGGCTGAAACTCGAATTAAATCAATCTGGAAATGTGAGATTTACGCGAGTCTTCGAGTCTTGTAAAAGATCTTATTGTAAAAGATCTTCTTGTAAAAGATCTCAAATAACGTTTAAAGGCAAAAATGTTTGTCTTGAAATCAGCAACATTTTATTAGTTGACAAAATGTTTGAGACTCAAACAGGAAACGAGATAATTTGGGTCAAAGGAAGGATCTTTTTAAGGAGTAT</canonical>
            <polymorphic>ACTAATTACTGTACATGCCCAATTACAACCACTTAATCGCATTCCTTTTATGACACGAGACCATTATTTTTGTGTATGGTGTTCTGATGGAAAAAAGGGTAAAAAGAAGAAGAAGAAGAGGAAAAGAGAGTGAACAATGGGAGTATCAAATAGTTTTGTGATTGTTGCGAAAGGGCGGGAACCAACAGTTTAGTTTTTTATGACTTACGTTTTGCAAAAGGAATCATTGGAACCAACTTTTAAAGGAACTTGTAATATTACTGTATCGAATAAAACATATCTAATCTTGACAACTTCAGTAAAGAAATTATAGACTGTGGAAATCATAAAAGCTATAAAGCTATAGTAGTTACTCTAATAAAAGCTGACCCTATACTTGCTCAATTATCTCAATTTCCATGGAAGATATAAACATTTCGTCGACAGATAAATTGATCATCACACTATCATCAAACTTTTATCAGTTGAATAATTGTGATATCTTTCAAAGGAAACGAGAMGATTTTCCAGGGTTTCCCAATAAATAGTTTTCGACATTGATTTTCTATAATATTTTTTTGGAAAAACTGAAATTTCTGAACCTTCGGATTTTCAGATTTTTCCCACTAATTAGTTTTTTTTCCAGCGAAGCTCACCTGTATCTAACCGGAAAAGAAAATGTCGTTTAGAAAGCTTGTCAGAATTTTCTCTAAATTCATTTTTCTCTGAAAAGGATCATTTATAGAATCGAGTATAGGATTATTTGAAACAAAAGCGGCTACCTGCAACACTGGCTGAAACTCGAATTAAATCAATCTGGAAATGTGAGATTTACGCGAGTCTTCGAGTCTTGTAAAAGATCTTATTGTAAAAGATCTTCTTGTAAAAGATCTCAAATAACGTTTAAAGGCAAAAATGTTTGTCTTGAAATCAGCAACATTTTATTAGTTGACAAAATGTTTGAGACTCAAACAGGAAACGAGATAATTTGGGTCAAAGGAAGGATCTTTTTAAGGAGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAATAAAAGCTGACCCTATACTTG</pcr_primer_p1>
		<pcr_primer_p2>ATTAGTGGGAAAAATCTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CTAATAAAAGCTGACCCTATACTTGCTCAATTATCTCAATTTCCATGGAAGATATAAACATTTCGTCGACAGATAAATTGATCATCACACTATCATCAAACTTTTATCAGTTGAATAATTGTGATATCTTTCAAAGGAAACGAGACGATTTTCCAGGGTTTCCCAATAAATAGTTTTCGACATTGATTTTCTATAATATTTTTTTGGAAAAACTGAAATTTCTGAACCTTCGGATTTTCAGATTTTTCCCACTAAT</canonical_amplicon>
		<polymorphic_amplicon>CTAATAAAAGCTGACCCTATACTTGCTCAATTATCTCAATTTCCATGGAAGATATAAACATTTCGTCGACAGATAAATTGATCATCACACTATCATCAAACTTTTATCAGTTGAATAATTGTGATATCTTTCAAAGGAAACGAGAMGATTTTCCAGGGTTTCCCAATAAATAGTTTTCGACATTGATTTTCTATAATATTTTTTTGGAAAAACTGAAATTTCTGAACCTTCGGATTTTCAGATTTTTCCCACTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20703</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>146052</contig_pos>
        <strand>+</strand>
        <context>TGATTTTCTA[C/T]AATATTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACGATTTTCCAGGGTTTCCCAATAAATAGTTTTCGACATTGATTTTCTA</left_flank>
        <right_flank>AATATTTTTTTGGAAAAACTGAAATTTCTGAACCTTCGGATTTTCAGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGACACGAGACCATTATTTTTGTGTATGGTGTTCTGATGGAAAAAAGGGTAAAAAGAAGAAGAAGAAGAGGAAAAGAGAGTGAACAATGGGAGTATCAAATAGTTTTGTGATTGTTGCGAAAGGGCGGGAACCAACAGTTTAGTTTTTTATGACTTACGTTTTGCAAAAGGAATCATTGGAACCAACTTTTAAAGGAACTTGTAATATTACTGTATCGAATAAAACATATCTAATCTTGACAACTTCAGTAAAGAAATTATAGACTGTGGAAATCATAAAAGCTATAAAGCTATAGTAGTTACTCTAATAAAAGCTGACCCTATACTTGCTCAATTATCTCAATTTCCATGGAAGATATAAACATTTCGTCGACAGATAAATTGATCATCACACTATCATCAAACTTTTATCAGTTGAATAATTGTGATATCTTTCAAAGGAAACGAGACGATTTTCCAGGGTTTCCCAATAAATAGTTTTCGACATTGATTTTCTATAATATTTTTTTGGAAAAACTGAAATTTCTGAACCTTCGGATTTTCAGATTTTTCCCACTAATTAGTTTTTTTTCCAGCGAAGCTCACCTGTATCTAACCGGAAAAGAAAATGTCGTTTAGAAAGCTTGTCAGAATTTTCTCTAAATTCATTTTTCTCTGAAAAGGATCATTTATAGAATCGAGTATAGGATTATTTGAAACAAAAGCGGCTACCTGCAACACTGGCTGAAACTCGAATTAAATCAATCTGGAAATGTGAGATTTACGCGAGTCTTCGAGTCTTGTAAAAGATCTTATTGTAAAAGATCTTCTTGTAAAAGATCTCAAATAACGTTTAAAGGCAAAAATGTTTGTCTTGAAATCAGCAACATTTTATTAGTTGACAAAATGTTTGAGACTCAAACAGGAAACGAGATAATTTGGGTCAAAGGAAGGATCTTTTTAAGGAGTATCACAGATTTTAAAAGTGAAAATTCACACGGTATTTTTCATGAGAAACG</canonical>
            <polymorphic>TATGACACGAGACCATTATTTTTGTGTATGGTGTTCTGATGGAAAAAAGGGTAAAAAGAAGAAGAAGAAGAGGAAAAGAGAGTGAACAATGGGAGTATCAAATAGTTTTGTGATTGTTGCGAAAGGGCGGGAACCAACAGTTTAGTTTTTTATGACTTACGTTTTGCAAAAGGAATCATTGGAACCAACTTTTAAAGGAACTTGTAATATTACTGTATCGAATAAAACATATCTAATCTTGACAACTTCAGTAAAGAAATTATAGACTGTGGAAATCATAAAAGCTATAAAGCTATAGTAGTTACTCTAATAAAAGCTGACCCTATACTTGCTCAATTATCTCAATTTCCATGGAAGATATAAACATTTCGTCGACAGATAAATTGATCATCACACTATCATCAAACTTTTATCAGTTGAATAATTGTGATATCTTTCAAAGGAAACGAGACGATTTTCCAGGGTTTCCCAATAAATAGTTTTCGACATTGATTTTCTAYAATATTTTTTTGGAAAAACTGAAATTTCTGAACCTTCGGATTTTCAGATTTTTCCCACTAATTAGTTTTTTTTCCAGCGAAGCTCACCTGTATCTAACCGGAAAAGAAAATGTCGTTTAGAAAGCTTGTCAGAATTTTCTCTAAATTCATTTTTCTCTGAAAAGGATCATTTATAGAATCGAGTATAGGATTATTTGAAACAAAAGCGGCTACCTGCAACACTGGCTGAAACTCGAATTAAATCAATCTGGAAATGTGAGATTTACGCGAGTCTTCGAGTCTTGTAAAAGATCTTATTGTAAAAGATCTTCTTGTAAAAGATCTCAAATAACGTTTAAAGGCAAAAATGTTTGTCTTGAAATCAGCAACATTTTATTAGTTGACAAAATGTTTGAGACTCAAACAGGAAACGAGATAATTTGGGTCAAAGGAAGGATCTTTTTAAGGAGTATCACAGATTTTAAAAGTGAAAATTCACACGGTATTTTTCATGAGAAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAATAAAAGCTGACCCTATACTTG</pcr_primer_p1>
		<pcr_primer_p2>ATTAGTGGGAAAAATCTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CTAATAAAAGCTGACCCTATACTTGCTCAATTATCTCAATTTCCATGGAAGATATAAACATTTCGTCGACAGATAAATTGATCATCACACTATCATCAAACTTTTATCAGTTGAATAATTGTGATATCTTTCAAAGGAAACGAGACGATTTTCCAGGGTTTCCCAATAAATAGTTTTCGACATTGATTTTCTATAATATTTTTTTGGAAAAACTGAAATTTCTGAACCTTCGGATTTTCAGATTTTTCCCACTAAT</canonical_amplicon>
		<polymorphic_amplicon>CTAATAAAAGCTGACCCTATACTTGCTCAATTATCTCAATTTCCATGGAAGATATAAACATTTCGTCGACAGATAAATTGATCATCACACTATCATCAAACTTTTATCAGTTGAATAATTGTGATATCTTTCAAAGGAAACGAGACGATTTTCCAGGGTTTCCCAATAAATAGTTTTCGACATTGATTTTCTAYAATATTTTTTTGGAAAAACTGAAATTTCTGAACCTTCGGATTTTCAGATTTTTCCCACTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20704</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>146115</contig_pos>
        <strand>+</strand>
        <context>TCCCACTAAT[G/T]WGTTTTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAAAACTGAAATTTCTGAACCTTCGGATTTTCAGATTTTTCCCACTAAT</left_flank>
        <right_flank>AGTTTTTTTTCCAGCGAAGCTCACCTGTATCTAACCGGAAAAGAAAATGT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGAAGAGGAAAAGAGAGTGAACAATGGGAGTATCAAATAGTTTTGTGATTGTTGCGAAAGGGCGGGAACCAACAGTTTAGTTTTTTATGACTTACGTTTTGCAAAAGGAATCATTGGAACCAACTTTTAAAGGAACTTGTAATATTACTGTATCGAATAAAACATATCTAATCTTGACAACTTCAGTAAAGAAATTATAGACTGTGGAAATCATAAAAGCTATAAAGCTATAGTAGTTACTCTAATAAAAGCTGACCCTATACTTGCTCAATTATCTCAATTTCCATGGAAGATATAAACATTTCGTCGACAGATAAATTGATCATCACACTATCATCAAACTTTTATCAGTTGAATAATTGTGATATCTTTCAAAGGAAACGAGACGATTTTCCAGGGTTTCCCAATAAATAGTTTTCGACATTGATTTTCTATAATATTTTTTTGGAAAAACTGAAATTTCTGAACCTTCGGATTTTCAGATTTTTCCCACTAATTAGTTTTTTTTCCAGCGAAGCTCACCTGTATCTAACCGGAAAAGAAAATGTCGTTTAGAAAGCTTGTCAGAATTTTCTCTAAATTCATTTTTCTCTGAAAAGGATCATTTATAGAATCGAGTATAGGATTATTTGAAACAAAAGCGGCTACCTGCAACACTGGCTGAAACTCGAATTAAATCAATCTGGAAATGTGAGATTTACGCGAGTCTTCGAGTCTTGTAAAAGATCTTATTGTAAAAGATCTTCTTGTAAAAGATCTCAAATAACGTTTAAAGGCAAAAATGTTTGTCTTGAAATCAGCAACATTTTATTAGTTGACAAAATGTTTGAGACTCAAACAGGAAACGAGATAATTTGGGTCAAAGGAAGGATCTTTTTAAGGAGTATCACAGATTTTAAAAGTGAAAATTCACACGGTATTTTTCATGAGAAACGTAGATTTTTTTTTGAAAAGTAGGACATAAAAACGAAATTATTCAAAAACTAATTGATTTTCAC</canonical>
            <polymorphic>GAAGAAGAGGAAAAGAGAGTGAACAATGGGAGTATCAAATAGTTTTGTGATTGTTGCGAAAGGGCGGGAACCAACAGTTTAGTTTTTTATGACTTACGTTTTGCAAAAGGAATCATTGGAACCAACTTTTAAAGGAACTTGTAATATTACTGTATCGAATAAAACATATCTAATCTTGACAACTTCAGTAAAGAAATTATAGACTGTGGAAATCATAAAAGCTATAAAGCTATAGTAGTTACTCTAATAAAAGCTGACCCTATACTTGCTCAATTATCTCAATTTCCATGGAAGATATAAACATTTCGTCGACAGATAAATTGATCATCACACTATCATCAAACTTTTATCAGTTGAATAATTGTGATATCTTTCAAAGGAAACGAGACGATTTTCCAGGGTTTCCCAATAAATAGTTTTCGACATTGATTTTCTATAATATTTTTTTGGAAAAACTGAAATTTCTGAACCTTCGGATTTTCAGATTTTTCCCACTAATKAGTTTTTTTTCCAGCGAAGCTCACCTGTATCTAACCGGAAAAGAAAATGTCGTTTAGAAAGCTTGTCAGAATTTTCTCTAAATTCATTTTTCTCTGAAAAGGATCATTTATAGAATCGAGTATAGGATTATTTGAAACAAAAGCGGCTACCTGCAACACTGGCTGAAACTCGAATTAAATCAATCTGGAAATGTGAGATTTACGCGAGTCTTCGAGTCTTGTAAAAGATCTTATTGTAAAAGATCTTCTTGTAAAAGATCTCAAATAACGTTTAAAGGCAAAAATGTTTGTCTTGAAATCAGCAACATTTTATTAGTTGACAAAATGTTTGAGACTCAAACAGGAAACGAGATAATTTGGGTCAAAGGAAGGATCTTTTTAAGGAGTATCACAGATTTTAAAAGTGAAAATTCACACGGTATTTTTCATGAGAAACGTAGATTTTTTTTTGAAAAGTAGGACATAAAAACGAAATTATTCAAAAACTAATTGATTTTCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>194 181 100 92 77 73 64 55 41 38 37 15 13 11 9</canonical_bands>
                <polymorphic_bands>194 181 110 100 92 77 64 55 41 38 15 13 11 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAAAACTGAAATTTCTGAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTGAGTTTTGGGTTATGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>754</pcr_amplicon_size>
		<canonical_amplicon>GGAAAAACTGAAATTTCTGAACCTTCGGATTTTCAGATTTTTCCCACTAATTAGTTTTTTTTCCAGCGAAGCTC</canonical_amplicon>
		<polymorphic_amplicon>GGAAAAACTGAAATTTCTGAACCTTCGGATTTTCAGATTTTTCCCACTAATKAGTTTTTTTTCCAGCGAAGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20705</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>146116</contig_pos>
        <strand>+</strand>
        <context>CCCACTAATK[A/T]GTTTTTTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAACTGAAATTTCTGAACCTTCGGATTTTCAGATTTTTCCCACTAATT</left_flank>
        <right_flank>GTTTTTTTTCCAGCGAAGCTCACCTGTATCTAACCGGAAAAGAAAATGTC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAGAGGAAAAGAGAGTGAACAATGGGAGTATCAAATAGTTTTGTGATTGTTGCGAAAGGGCGGGAACCAACAGTTTAGTTTTTTATGACTTACGTTTTGCAAAAGGAATCATTGGAACCAACTTTTAAAGGAACTTGTAATATTACTGTATCGAATAAAACATATCTAATCTTGACAACTTCAGTAAAGAAATTATAGACTGTGGAAATCATAAAAGCTATAAAGCTATAGTAGTTACTCTAATAAAAGCTGACCCTATACTTGCTCAATTATCTCAATTTCCATGGAAGATATAAACATTTCGTCGACAGATAAATTGATCATCACACTATCATCAAACTTTTATCAGTTGAATAATTGTGATATCTTTCAAAGGAAACGAGACGATTTTCCAGGGTTTCCCAATAAATAGTTTTCGACATTGATTTTCTATAATATTTTTTTGGAAAAACTGAAATTTCTGAACCTTCGGATTTTCAGATTTTTCCCACTAATTAGTTTTTTTTCCAGCGAAGCTCACCTGTATCTAACCGGAAAAGAAAATGTCGTTTAGAAAGCTTGTCAGAATTTTCTCTAAATTCATTTTTCTCTGAAAAGGATCATTTATAGAATCGAGTATAGGATTATTTGAAACAAAAGCGGCTACCTGCAACACTGGCTGAAACTCGAATTAAATCAATCTGGAAATGTGAGATTTACGCGAGTCTTCGAGTCTTGTAAAAGATCTTATTGTAAAAGATCTTCTTGTAAAAGATCTCAAATAACGTTTAAAGGCAAAAATGTTTGTCTTGAAATCAGCAACATTTTATTAGTTGACAAAATGTTTGAGACTCAAACAGGAAACGAGATAATTTGGGTCAAAGGAAGGATCTTTTTAAGGAGTATCACAGATTTTAAAAGTGAAAATTCACACGGTATTTTTCATGAGAAACGTAGATTTTTTTTTGAAAAGTAGGACATAAAAACGAAATTATTCAAAAACTAATTGATTTTCACT</canonical>
            <polymorphic>AAGAAGAGGAAAAGAGAGTGAACAATGGGAGTATCAAATAGTTTTGTGATTGTTGCGAAAGGGCGGGAACCAACAGTTTAGTTTTTTATGACTTACGTTTTGCAAAAGGAATCATTGGAACCAACTTTTAAAGGAACTTGTAATATTACTGTATCGAATAAAACATATCTAATCTTGACAACTTCAGTAAAGAAATTATAGACTGTGGAAATCATAAAAGCTATAAAGCTATAGTAGTTACTCTAATAAAAGCTGACCCTATACTTGCTCAATTATCTCAATTTCCATGGAAGATATAAACATTTCGTCGACAGATAAATTGATCATCACACTATCATCAAACTTTTATCAGTTGAATAATTGTGATATCTTTCAAAGGAAACGAGACGATTTTCCAGGGTTTCCCAATAAATAGTTTTCGACATTGATTTTCTATAATATTTTTTTGGAAAAACTGAAATTTCTGAACCTTCGGATTTTCAGATTTTTCCCACTAATTWGTTTTTTTTCCAGCGAAGCTCACCTGTATCTAACCGGAAAAGAAAATGTCGTTTAGAAAGCTTGTCAGAATTTTCTCTAAATTCATTTTTCTCTGAAAAGGATCATTTATAGAATCGAGTATAGGATTATTTGAAACAAAAGCGGCTACCTGCAACACTGGCTGAAACTCGAATTAAATCAATCTGGAAATGTGAGATTTACGCGAGTCTTCGAGTCTTGTAAAAGATCTTATTGTAAAAGATCTTCTTGTAAAAGATCTCAAATAACGTTTAAAGGCAAAAATGTTTGTCTTGAAATCAGCAACATTTTATTAGTTGACAAAATGTTTGAGACTCAAACAGGAAACGAGATAATTTGGGTCAAAGGAAGGATCTTTTTAAGGAGTATCACAGATTTTAAAAGTGAAAATTCACACGGTATTTTTCATGAGAAACGTAGATTTTTTTTTGAAAAGTAGGACATAAAAACGAAATTATTCAAAAACTAATTGATTTTCACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACTGAAATTTCTGAACC</pcr_primer_p1>
		<pcr_primer_p2>TTTTATTCGAAATTAGACGATTG</pcr_primer_p2>
		<pcr_amplicon_size>722</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACTGAAATTTCTGAACCTTCGGATTTTCAGATTTTTCCCACTAATTAGTTTTTTTTCCAGCGAAGCTCA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACTGAAATTTCTGAACCTTCGGATTTTCAGATTTTTCCCACTAATTWGTTTTTTTTCCAGCGAAGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20706</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>148535</contig_pos>
        <strand>+</strand>
        <context>TCCCATTTGT[A/G]AACAAAGTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAATTCCCATTTGT</left_flank>
        <right_flank>AACAAAGTTGGAGAGAACAGTATGCCGAATGGGTTTTCACTGTGGTTTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTAGAAACCAAGGGGGCCCTGTTGTTGGACTCCAAGCATACTAGAAATACTAGACCAAATATAAGAAGGCAAAATATCCAAATCTCAAATATTACCCTTGTTATCCTTTTCCAGATGTATAGAAGGAATTGACGACTGGAATCTTCGACTCTCCGATTGGATGAAATCAGAAGCTGTAAACTGTGAATTCCTTGAGGCTGTCTGCTGGGAAGATGACACCGAAGTCTATGGATACATTCATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGACAGCCTACAACCCCGAAAACCTCAACAGATCAGCCAAGTGTTTTTGTATTTCTTTTTGATTCAATGAGCACTGGATCAGCAAAACGGTACAACAAACTTTTTTTGCGGAATCTCTTATTCTTTTTCCAGATCGTTCCCCAAAACCCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAATTCCCATTTGTAAACAAAGTTGGAGAGAACAGTATGCCGAATGGGTTTTCACTGTGGTTTGGTATGTCTTCCTGTTTGGTTGTGGCTACAGTTTTTTTTTCAGGAAAGTTATTAGAGCCAGTTCTTGGAAAGAACTACGGTGGGGTCGATGTAGAGGCGGATTGGAACTCAACGTCATATTGTTATACTCATTTGAACGGATCGATTTTTGGAGAGTTCGAAAAACATGGATACATGGTAAGTTAGGATTTGCGTAAATTAAATTGTGAAAATTTTCACAGACGCTTAATATCGACGACTGGAATGCACAAATGGTCAACTATCCGGACTGCAAAGGATTCAAAGATCCGCCCACTCATCACTACATGCATCCATTCTATATGGCTAACGATCAGTTTGCGACCAGTATCACCAAAAAGCACTTGAAGGGGAAGTTGTTGTGTAGAGAAGAACGACATCCAGCGTTTGAGTATTTTCAAGACTTTGTGAATACTTATAAAGGTTAGGAAGGC</canonical>
            <polymorphic>AGCTAGAAACCAAGGGGGCCCTGTTGTTGGACTCCAAGCATACTAGAAATACTAGACCAAATATAAGAAGGCAAAATATCCAAATCTCAAATATTACCCTTGTTATCCTTTTCCAGATGTATAGAAGGAATTGACGACTGGAATCTTCGACTCTCCGATTGGATGAAATCAGAAGCTGTAAACTGTGAATTCCTTGAGGCTGTCTGCTGGGAAGATGACACCGAAGTCTATGGATACATTCATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGACAGCCTACAACCCCGAAAACCTCAACAGATCAGCCAAGTGTTTTTGTATTTCTTTTTGATTCAATGAGCACTGGATCAGCAAAACGGTACAACAAACTTTTTTTGCGGAATCTCTTATTCTTTTTCCAGATCGTTCCCCAAAACCCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAATTCCCATTTGTRAACAAAGTTGGAGAGAACAGTATGCCGAATGGGTTTTCACTGTGGTTTGGTATGTCTTCCTGTTTGGTTGTGGCTACAGTTTTTTTTTCAGGAAAGTTATTAGAGCCAGTTCTTGGAAAGAACTACGGTGGGGTCGATGTAGAGGCGGATTGGAACTCAACGTCATATTGTTATACTCATTTGAACGGATCGATTTTTGGAGAGTTCGAAAAACATGGATACATGGTAAGTTAGGATTTGCGTAAATTAAATTGTGAAAATTTTCACAGACGCTTAATATCGACGACTGGAATGCACAAATGGTCAACTATCCGGACTGCAAAGGATTCAAAGATCCGCCCACTCATCACTACATGCATCCATTCTATATGGCTAACGATCAGTTTGCGACCAGTATCACCAAAAAGCACTTGAAGGGGAAGTTGTTGTGTAGAGAAGAACGACATCCAGCGTTTGAGTATTTTCAAGACTTTGTGAATACTTATAAAGGTTAGGAAGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTTATTCTTTTTCCAGATCGT</pcr_primer_p1>
		<pcr_primer_p2>AATATGACGTTGAGTTCCAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTCTTATTCTTTTTCCAGATCGTTCCCCAAAACCCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAATTCCCATTTGTAAACAAAGTTGGAGAGAACAGTATGCCGAATGGGTTTTCACTGTGGTTTGGTATGTCTTCCTGTTTGGTTGTGGCTACAGTTTTTTTTTCAGGAAAGTTATTAGAGCCAGTTCTTGGAAAGAACTACGGTGGGGTCGATGTAGAGGCGGATTGGAACTCAACGTCATATT</canonical_amplicon>
		<polymorphic_amplicon>CTCTTATTCTTTTTCCAGATCGTTCCCCAAAACCCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAATTCCCATTTGTRAACAAAGTTGGAGAGAACAGTATGCCGAATGGGTTTTCACTGTGGTTTGGTATGTCTTCCTGTTTGGTTGTGGCTACAGTTTTTTTTTCAGGAAAGTTATTAGAGCCAGTTCTTGGAAAGAACTACGGTGGGGTCGATGTAGAGGCGGATTGGAACTCAACGTCATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20707</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>148487</contig_pos>
        <strand>+</strand>
        <context>TCCCCAAAAC[C/T]CTATCGCTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACTTTTTTTGCGGAATCTCTTATTCTTTTTCCAGATCGTTCCCCAAAAC</left_flank>
        <right_flank>CTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAATTCCCATTTGTAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCCAACCACTATGCCTTGTACAGGGGATGGATGTGTGCTCCTGGGAAAGCTAGAAACCAAGGGGGCCCTGTTGTTGGACTCCAAGCATACTAGAAATACTAGACCAAATATAAGAAGGCAAAATATCCAAATCTCAAATATTACCCTTGTTATCCTTTTCCAGATGTATAGAAGGAATTGACGACTGGAATCTTCGACTCTCCGATTGGATGAAATCAGAAGCTGTAAACTGTGAATTCCTTGAGGCTGTCTGCTGGGAAGATGACACCGAAGTCTATGGATACATTCATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGACAGCCTACAACCCCGAAAACCTCAACAGATCAGCCAAGTGTTTTTGTATTTCTTTTTGATTCAATGAGCACTGGATCAGCAAAACGGTACAACAAACTTTTTTTGCGGAATCTCTTATTCTTTTTCCAGATCGTTCCCCAAAACCCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAATTCCCATTTGTAAACAAAGTTGGAGAGAACAGTATGCCGAATGGGTTTTCACTGTGGTTTGGTATGTCTTCCTGTTTGGTTGTGGCTACAGTTTTTTTTTCAGGAAAGTTATTAGAGCCAGTTCTTGGAAAGAACTACGGTGGGGTCGATGTAGAGGCGGATTGGAACTCAACGTCATATTGTTATACTCATTTGAACGGATCGATTTTTGGAGAGTTCGAAAAACATGGATACATGGTAAGTTAGGATTTGCGTAAATTAAATTGTGAAAATTTTCACAGACGCTTAATATCGACGACTGGAATGCACAAATGGTCAACTATCCGGACTGCAAAGGATTCAAAGATCCGCCCACTCATCACTACATGCATCCATTCTATATGGCTAACGATCAGTTTGCGACCAGTATCACCAAAAAGCACTTGAAGGGGAAGTTGTTGTGTAGAGAAGAACGACATCCAGCG</canonical>
            <polymorphic>CGCCAACCACTATGCCTTGTACAGGGGATGGATGTGTGCTCCTGGGAAAGCTAGAAACCAAGGGGGCCCTGTTGTTGGACTCCAAGCATACTAGAAATACTAGACCAAATATAAGAAGGCAAAATATCCAAATCTCAAATATTACCCTTGTTATCCTTTTCCAGATGTATAGAAGGAATTGACGACTGGAATCTTCGACTCTCCGATTGGATGAAATCAGAAGCTGTAAACTGTGAATTCCTTGAGGCTGTCTGCTGGGAAGATGACACCGAAGTCTATGGATACATTCATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGACAGCCTACAACCCCGAAAACCTCAACAGATCAGCCAAGTGTTTTTGTATTTCTTTTTGATTCAATGAGCACTGGATCAGCAAAACGGTACAACAAACTTTTTTTGCGGAATCTCTTATTCTTTTTCCAGATCGTTCCCCAAAACYCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAATTCCCATTTGTAAACAAAGTTGGAGAGAACAGTATGCCGAATGGGTTTTCACTGTGGTTTGGTATGTCTTCCTGTTTGGTTGTGGCTACAGTTTTTTTTTCAGGAAAGTTATTAGAGCCAGTTCTTGGAAAGAACTACGGTGGGGTCGATGTAGAGGCGGATTGGAACTCAACGTCATATTGTTATACTCATTTGAACGGATCGATTTTTGGAGAGTTCGAAAAACATGGATACATGGTAAGTTAGGATTTGCGTAAATTAAATTGTGAAAATTTTCACAGACGCTTAATATCGACGACTGGAATGCACAAATGGTCAACTATCCGGACTGCAAAGGATTCAAAGATCCGCCCACTCATCACTACATGCATCCATTCTATATGGCTAACGATCAGTTTGCGACCAGTATCACCAAAAAGCACTTGAAGGGGAAGTTGTTGTGTAGAGAAGAACGACATCCAGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAATCTAAAGTCATTCCAGAC</pcr_primer_p1>
		<pcr_primer_p2>CATACTGTTCTCTCCAACTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TGAAATCTAAAGTCATTCCAGACAGCCTACAACCCCGAAAACCTCAACAGATCAGCCAAGTGTTTTTGTATTTCTTTTTGATTCAATGAGCACTGGATCAGCAAAACGGTACAACAAACTTTTTTTGCGGAATCTCTTATTCTTTTTCCAGATCGTTCCCCAAAACCCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAATTCCCATTTGTAAACAAAGTTGGAGAGAACAGTATG</canonical_amplicon>
		<polymorphic_amplicon>TGAAATCTAAAGTCATTCCAGACAGCCTACAACCCCGAAAACCTCAACAGATCAGCCAAGTGTTTTTGTATTTCTTTTTGATTCAATGAGCACTGGATCAGCAAAACGGTACAACAAACTTTTTTTGCGGAATCTCTTATTCTTTTTCCAGATCGTTCCCCAAAACYCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAATTCCCATTTGTAAACAAAGTTGGAGAGAACAGTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20708</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>148393</contig_pos>
        <strand>+</strand>
        <context>TTTTTGTATT[C/T]CTTTTTGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGCCTACAACCCCGAAAACCTCAACAGATCAGCCAAGTGTTTTTGTATT</left_flank>
        <right_flank>CTTTTTGATTCAATGAGCACTGGATCAGCAAAACGGTACAACAAACTTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTAGTATATGTTCTCGGAAGAACAAATACTGGAGATGGGCGGTTCACTTATATAGGGGTATCTGGGAGAGCAGCCGACATCTCACGACTTGCGCCAACCACTATGCCTTGTACAGGGGATGGATGTGTGCTCCTGGGAAAGCTAGAAACCAAGGGGGCCCTGTTGTTGGACTCCAAGCATACTAGAAATACTAGACCAAATATAAGAAGGCAAAATATCCAAATCTCAAATATTACCCTTGTTATCCTTTTCCAGATGTATAGAAGGAATTGACGACTGGAATCTTCGACTCTCCGATTGGATGAAATCAGAAGCTGTAAACTGTGAATTCCTTGAGGCTGTCTGCTGGGAAGATGACACCGAAGTCTATGGATACATTCATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGACAGCCTACAACCCCGAAAACCTCAACAGATCAGCCAAGTGTTTTTGTATTTCTTTTTGATTCAATGAGCACTGGATCAGCAAAACGGTACAACAAACTTTTTTTGCGGAATCTCTTATTCTTTTTCCAGATCGTTCCCCAAAACCCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAATTCCCATTTGTAAACAAAGTTGGAGAGAACAGTATGCCGAATGGGTTTTCACTGTGGTTTGGTATGTCTTCCTGTTTGGTTGTGGCTACAGTTTTTTTTTCAGGAAAGTTATTAGAGCCAGTTCTTGGAAAGAACTACGGTGGGGTCGATGTAGAGGCGGATTGGAACTCAACGTCATATTGTTATACTCATTTGAACGGATCGATTTTTGGAGAGTTCGAAAAACATGGATACATGGTAAGTTAGGATTTGCGTAAATTAAATTGTGAAAATTTTCACAGACGCTTAATATCGACGACTGGAATGCACAAATGGTCAACTATCCGGACTGCAAAGGATTCAAAGATCCGCCCACTCATCACTACATGCA</canonical>
            <polymorphic>ATTTTAGTATATGTTCTCGGAAGAACAAATACTGGAGATGGGCGGTTCACTTATATAGGGGTATCTGGGAGAGCAGCCGACATCTCACGACTTGCGCCAACCACTATGCCTTGTACAGGGGATGGATGTGTGCTCCTGGGAAAGCTAGAAACCAAGGGGGCCCTGTTGTTGGACTCCAAGCATACTAGAAATACTAGACCAAATATAAGAAGGCAAAATATCCAAATCTCAAATATTACCCTTGTTATCCTTTTCCAGATGTATAGAAGGAATTGACGACTGGAATCTTCGACTCTCCGATTGGATGAAATCAGAAGCTGTAAACTGTGAATTCCTTGAGGCTGTCTGCTGGGAAGATGACACCGAAGTCTATGGATACATTCATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGACAGCCTACAACCCCGAAAACCTCAACAGATCAGCCAAGTGTTTTTGTATTYCTTTTTGATTCAATGAGCACTGGATCAGCAAAACGGTACAACAAACTTTTTTTGCGGAATCTCTTATTCTTTTTCCAGATCGTTCCCCAAAACCCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAATTCCCATTTGTAAACAAAGTTGGAGAGAACAGTATGCCGAATGGGTTTTCACTGTGGTTTGGTATGTCTTCCTGTTTGGTTGTGGCTACAGTTTTTTTTTCAGGAAAGTTATTAGAGCCAGTTCTTGGAAAGAACTACGGTGGGGTCGATGTAGAGGCGGATTGGAACTCAACGTCATATTGTTATACTCATTTGAACGGATCGATTTTTGGAGAGTTCGAAAAACATGGATACATGGTAAGTTAGGATTTGCGTAAATTAAATTGTGAAAATTTTCACAGACGCTTAATATCGACGACTGGAATGCACAAATGGTCAACTATCCGGACTGCAAAGGATTCAAAGATCCGCCCACTCATCACTACATGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATACACAAATCATACCAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>ATTCAACAGAATCTAGACGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGACAGCCTACAACCCCGAAAACCTCAACAGATCAGCCAAGTGTTTTTGTATTTCTTTTTGATTCAATGAGCACTGGATCAGCAAAACGGTACAACAAACTTTTTTTGCGGAATCTCTTATTCTTTTTCCAGATCGTTCCCCAAAACCCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAAT</canonical_amplicon>
		<polymorphic_amplicon>CATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGACAGCCTACAACCCCGAAAACCTCAACAGATCAGCCAAGTGTTTTTGTATTYCTTTTTGATTCAATGAGCACTGGATCAGCAAAACGGTACAACAAACTTTTTTTGCGGAATCTCTTATTCTTTTTCCAGATCGTTCCCCAAAACCCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20709</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>148374</contig_pos>
        <strand>+</strand>
        <context>TCAACAGATY[A/T]GCCAAGTGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATCTAAAGTCATTCCAGACAGCCTACAACCCCGAAAACCTCAACAGATC</left_flank>
        <right_flank>GCCAAGTGTTTTTGTATTTCTTTTTGATTCAATGAGCACTGGATCAGCAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTCTCTGTATTGTTCCAATTTTAGTATATGTTCTCGGAAGAACAAATACTGGAGATGGGCGGTTCACTTATATAGGGGTATCTGGGAGAGCAGCCGACATCTCACGACTTGCGCCAACCACTATGCCTTGTACAGGGGATGGATGTGTGCTCCTGGGAAAGCTAGAAACCAAGGGGGCCCTGTTGTTGGACTCCAAGCATACTAGAAATACTAGACCAAATATAAGAAGGCAAAATATCCAAATCTCAAATATTACCCTTGTTATCCTTTTCCAGATGTATAGAAGGAATTGACGACTGGAATCTTCGACTCTCCGATTGGATGAAATCAGAAGCTGTAAACTGTGAATTCCTTGAGGCTGTCTGCTGGGAAGATGACACCGAAGTCTATGGATACATTCATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGACAGCCTACAACCCCGAAAACCTCAACAGATCAGCCAAGTGTTTTTGTATTTCTTTTTGATTCAATGAGCACTGGATCAGCAAAACGGTACAACAAACTTTTTTTGCGGAATCTCTTATTCTTTTTCCAGATCGTTCCCCAAAACCCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAATTCCCATTTGTAAACAAAGTTGGAGAGAACAGTATGCCGAATGGGTTTTCACTGTGGTTTGGTATGTCTTCCTGTTTGGTTGTGGCTACAGTTTTTTTTTCAGGAAAGTTATTAGAGCCAGTTCTTGGAAAGAACTACGGTGGGGTCGATGTAGAGGCGGATTGGAACTCAACGTCATATTGTTATACTCATTTGAACGGATCGATTTTTGGAGAGTTCGAAAAACATGGATACATGGTAAGTTAGGATTTGCGTAAATTAAATTGTGAAAATTTTCACAGACGCTTAATATCGACGACTGGAATGCACAAATGGTCAACTATCCGGACTGCAAAGGATTCAAAGATCCGC</canonical>
            <polymorphic>TCTTCTCTGTATTGTTCCAATTTTAGTATATGTTCTCGGAAGAACAAATACTGGAGATGGGCGGTTCACTTATATAGGGGTATCTGGGAGAGCAGCCGACATCTCACGACTTGCGCCAACCACTATGCCTTGTACAGGGGATGGATGTGTGCTCCTGGGAAAGCTAGAAACCAAGGGGGCCCTGTTGTTGGACTCCAAGCATACTAGAAATACTAGACCAAATATAAGAAGGCAAAATATCCAAATCTCAAATATTACCCTTGTTATCCTTTTCCAGATGTATAGAAGGAATTGACGACTGGAATCTTCGACTCTCCGATTGGATGAAATCAGAAGCTGTAAACTGTGAATTCCTTGAGGCTGTCTGCTGGGAAGATGACACCGAAGTCTATGGATACATTCATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGACAGCCTACAACCCCGAAAACCTCAACAGATCWGCCAAGTGTTTTTGTATTTCTTTTTGATTCAATGAGCACTGGATCAGCAAAACGGTACAACAAACTTTTTTTGCGGAATCTCTTATTCTTTTTCCAGATCGTTCCCCAAAACCCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAATTCCCATTTGTAAACAAAGTTGGAGAGAACAGTATGCCGAATGGGTTTTCACTGTGGTTTGGTATGTCTTCCTGTTTGGTTGTGGCTACAGTTTTTTTTTCAGGAAAGTTATTAGAGCCAGTTCTTGGAAAGAACTACGGTGGGGTCGATGTAGAGGCGGATTGGAACTCAACGTCATATTGTTATACTCATTTGAACGGATCGATTTTTGGAGAGTTCGAAAAACATGGATACATGGTAAGTTAGGATTTGCGTAAATTAAATTGTGAAAATTTTCACAGACGCTTAATATCGACGACTGGAATGCACAAATGGTCAACTATCCGGACTGCAAAGGATTCAAAGATCCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>234 233 157 111 95 68 32 30 24 16</canonical_bands>
                <polymorphic_bands>263 234 157 111 95 68 32 24 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATACACAAATCATACCAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>ATTCAACAGAATCTAGACGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGACAGCCTACAACCCCGAAAACCTCAACAGATCAGCCAAGTGTTTTTGTATTTCTTTTTGATTCAATGAGCACTGGATCAGCAAAACGGTACAACAAACTTTTTTTGCGGAATCTCTTATTCTTTTTCCAGATCGTTCCCCAAAACCCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAAT</canonical_amplicon>
		<polymorphic_amplicon>CATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGACAGCCTACAACCCCGAAAACCTCAACAGATCWGCCAAGTGTTTTTGTATTTCTTTTTGATTCAATGAGCACTGGATCAGCAAAACGGTACAACAAACTTTTTTTGCGGAATCTCTTATTCTTTTTCCAGATCGTTCCCCAAAACCCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20710</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>148373</contig_pos>
        <strand>+</strand>
        <context>CTCAACAGAT[C/T]WGCCAAGTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATCTAAAGTCATTCCAGACAGCCTACAACCCCGAAAACCTCAACAGAT</left_flank>
        <right_flank>AGCCAAGTGTTTTTGTATTTCTTTTTGATTCAATGAGCACTGGATCAGCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTTCTCTGTATTGTTCCAATTTTAGTATATGTTCTCGGAAGAACAAATACTGGAGATGGGCGGTTCACTTATATAGGGGTATCTGGGAGAGCAGCCGACATCTCACGACTTGCGCCAACCACTATGCCTTGTACAGGGGATGGATGTGTGCTCCTGGGAAAGCTAGAAACCAAGGGGGCCCTGTTGTTGGACTCCAAGCATACTAGAAATACTAGACCAAATATAAGAAGGCAAAATATCCAAATCTCAAATATTACCCTTGTTATCCTTTTCCAGATGTATAGAAGGAATTGACGACTGGAATCTTCGACTCTCCGATTGGATGAAATCAGAAGCTGTAAACTGTGAATTCCTTGAGGCTGTCTGCTGGGAAGATGACACCGAAGTCTATGGATACATTCATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGACAGCCTACAACCCCGAAAACCTCAACAGATCAGCCAAGTGTTTTTGTATTTCTTTTTGATTCAATGAGCACTGGATCAGCAAAACGGTACAACAAACTTTTTTTGCGGAATCTCTTATTCTTTTTCCAGATCGTTCCCCAAAACCCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAATTCCCATTTGTAAACAAAGTTGGAGAGAACAGTATGCCGAATGGGTTTTCACTGTGGTTTGGTATGTCTTCCTGTTTGGTTGTGGCTACAGTTTTTTTTTCAGGAAAGTTATTAGAGCCAGTTCTTGGAAAGAACTACGGTGGGGTCGATGTAGAGGCGGATTGGAACTCAACGTCATATTGTTATACTCATTTGAACGGATCGATTTTTGGAGAGTTCGAAAAACATGGATACATGGTAAGTTAGGATTTGCGTAAATTAAATTGTGAAAATTTTCACAGACGCTTAATATCGACGACTGGAATGCACAAATGGTCAACTATCCGGACTGCAAAGGATTCAAAGATCCG</canonical>
            <polymorphic>ATCTTCTCTGTATTGTTCCAATTTTAGTATATGTTCTCGGAAGAACAAATACTGGAGATGGGCGGTTCACTTATATAGGGGTATCTGGGAGAGCAGCCGACATCTCACGACTTGCGCCAACCACTATGCCTTGTACAGGGGATGGATGTGTGCTCCTGGGAAAGCTAGAAACCAAGGGGGCCCTGTTGTTGGACTCCAAGCATACTAGAAATACTAGACCAAATATAAGAAGGCAAAATATCCAAATCTCAAATATTACCCTTGTTATCCTTTTCCAGATGTATAGAAGGAATTGACGACTGGAATCTTCGACTCTCCGATTGGATGAAATCAGAAGCTGTAAACTGTGAATTCCTTGAGGCTGTCTGCTGGGAAGATGACACCGAAGTCTATGGATACATTCATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGACAGCCTACAACCCCGAAAACCTCAACAGATYAGCCAAGTGTTTTTGTATTTCTTTTTGATTCAATGAGCACTGGATCAGCAAAACGGTACAACAAACTTTTTTTGCGGAATCTCTTATTCTTTTTCCAGATCGTTCCCCAAAACCCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAATTCCCATTTGTAAACAAAGTTGGAGAGAACAGTATGCCGAATGGGTTTTCACTGTGGTTTGGTATGTCTTCCTGTTTGGTTGTGGCTACAGTTTTTTTTTCAGGAAAGTTATTAGAGCCAGTTCTTGGAAAGAACTACGGTGGGGTCGATGTAGAGGCGGATTGGAACTCAACGTCATATTGTTATACTCATTTGAACGGATCGATTTTTGGAGAGTTCGAAAAACATGGATACATGGTAAGTTAGGATTTGCGTAAATTAAATTGTGAAAATTTTCACAGACGCTTAATATCGACGACTGGAATGCACAAATGGTCAACTATCCGGACTGCAAAGGATTCAAAGATCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>496 252 145 55 46 6</canonical_bands>
                <polymorphic_bands>542 252 145 55 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATACACAAATCATACCAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>ATTCAACAGAATCTAGACGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGACAGCCTACAACCCCGAAAACCTCAACAGATCAGCCAAGTGTTTTTGTATTTCTTTTTGATTCAATGAGCACTGGATCAGCAAAACGGTACAACAAACTTTTTTTGCGGAATCTCTTATTCTTTTTCCAGATCGTTCCCCAAAACCCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAAT</canonical_amplicon>
		<polymorphic_amplicon>CATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGACAGCCTACAACCCCGAAAACCTCAACAGATYAGCCAAGTGTTTTTGTATTTCTTTTTGATTCAATGAGCACTGGATCAGCAAAACGGTACAACAAACTTTTTTTGCGGAATCTCTTATTCTTTTTCCAGATCGTTCCCCAAAACCCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20711</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>148227</contig_pos>
        <strand>+</strand>
        <context>AYTGTGAATT[C/T]CTTGAGGCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCTTCGACTCTCCGATTGGATGAAATCAGAAGCTGTAAACTGTGAATT</left_flank>
        <right_flank>CTTGAGGCTGTCTGCTGGGAAGATGACACCGAAGTCTATGGATACATTCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTCCGCCAATTTTTCCTCCCAGATGGTTCTTCCCACTTTTTGTTTTCCTCCCAGTTGGTGTGCTCTCCTCAGTTGACCCAAAAACTGCAAAAAGTTTGGAACGCTTCACGAATTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATTGTTCCAATTTTAGTATATGTTCTCGGAAGAACAAATACTGGAGATGGGCGGTTCACTTATATAGGGGTATCTGGGAGAGCAGCCGACATCTCACGACTTGCGCCAACCACTATGCCTTGTACAGGGGATGGATGTGTGCTCCTGGGAAAGCTAGAAACCAAGGGGGCCCTGTTGTTGGACTCCAAGCATACTAGAAATACTAGACCAAATATAAGAAGGCAAAATATCCAAATCTCAAATATTACCCTTGTTATCCTTTTCCAGATGTATAGAAGGAATTGACGACTGGAATCTTCGACTCTCCGATTGGATGAAATCAGAAGCTGTAAACTGTGAATTCCTTGAGGCTGTCTGCTGGGAAGATGACACCGAAGTCTATGGATACATTCATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGACAGCCTACAACCCCGAAAACCTCAACAGATCAGCCAAGTGTTTTTGTATTTCTTTTTGATTCAATGAGCACTGGATCAGCAAAACGGTACAACAAACTTTTTTTGCGGAATCTCTTATTCTTTTTCCAGATCGTTCCCCAAAACCCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAATTCCCATTTGTAAACAAAGTTGGAGAGAACAGTATGCCGAATGGGTTTTCACTGTGGTTTGGTATGTCTTCCTGTTTGGTTGTGGCTACAGTTTTTTTTTCAGGAAAGTTATTAGAGCCAGTTCTTGGAAAGAACTACGGTGGGGTCGATGTAGAGGCGGATTGGAACTCAACGTCATATTGTTATACTCATTTGAACGGATCG</canonical>
            <polymorphic>GCTCCGCCAATTTTTCCTCCCAGATGGTTCTTCCCACTTTTTGTTTTCCTCCCAGTTGGTGTGCTCTCCTCAGTTGACCCAAAAACTGCAAAAAGTTTGGAACGCTTCACGAATTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATTGTTCCAATTTTAGTATATGTTCTCGGAAGAACAAATACTGGAGATGGGCGGTTCACTTATATAGGGGTATCTGGGAGAGCAGCCGACATCTCACGACTTGCGCCAACCACTATGCCTTGTACAGGGGATGGATGTGTGCTCCTGGGAAAGCTAGAAACCAAGGGGGCCCTGTTGTTGGACTCCAAGCATACTAGAAATACTAGACCAAATATAAGAAGGCAAAATATCCAAATCTCAAATATTACCCTTGTTATCCTTTTCCAGATGTATAGAAGGAATTGACGACTGGAATCTTCGACTCTCCGATTGGATGAAATCAGAAGCTGTAAACTGTGAATTYCTTGAGGCTGTCTGCTGGGAAGATGACACCGAAGTCTATGGATACATTCATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGACAGCCTACAACCCCGAAAACCTCAACAGATCAGCCAAGTGTTTTTGTATTTCTTTTTGATTCAATGAGCACTGGATCAGCAAAACGGTACAACAAACTTTTTTTGCGGAATCTCTTATTCTTTTTCCAGATCGTTCCCCAAAACCCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAATTCCCATTTGTAAACAAAGTTGGAGAGAACAGTATGCCGAATGGGTTTTCACTGTGGTTTGGTATGTCTTCCTGTTTGGTTGTGGCTACAGTTTTTTTTTCAGGAAAGTTATTAGAGCCAGTTCTTGGAAAGAACTACGGTGGGGTCGATGTAGAGGCGGATTGGAACTCAACGTCATATTGTTATACTCATTTGAACGGATCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>384 299 206 111</canonical_bands>
                <polymorphic_bands>683 206 111</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>495 299 206</canonical_bands>
                <polymorphic_bands>794 206</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAGAAGGCAAAATATCCAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGTCTGGAATGACTTTAGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATAAGAAGGCAAAATATCCAAATCTCAAATATTACCCTTGTTATCCTTTTCCAGATGTATAGAAGGAATTGACGACTGGAATCTTCGACTCTCCGATTGGATGAAATCAGAAGCTGTAAACTGTGAATTCCTTGAGGCTGTCTGCTGGGAAGATGACACCGAAGTCTATGGATACATTCATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGACA</canonical_amplicon>
		<polymorphic_amplicon>ATAAGAAGGCAAAATATCCAAATCTCAAATATTACCCTTGTTATCCTTTTCCAGATGTATAGAAGGAATTGACGACTGGAATCTTCGACTCTCCGATTGGATGAAATCAGAAGCTGTAAACTGTGAATTYCTTGAGGCTGTCTGCTGGGAAGATGACACCGAAGTCTATGGATACATTCATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20712</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>148145</contig_pos>
        <strand>+</strand>
        <context>TTGTTATCCT[C/T]TTCCAGATGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATATAAGAAGGCAAAATATCCAAATCTCAAATATTACCCTTGTTATCCT</left_flank>
        <right_flank>TTCCAGATGTATAGAAGGAATTGACGACTGGAATCTTCGACTCTCCGATT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTAATTTGCAACCCTGGCACGCTTTTGCCGCATGGTTTTTTTCTTGACCNNNNNNNNNNCCGTGCCAGGGTTGCAAATTAGGCTCCGCCAATTTTTCCTCCCAGATGGTTCTTCCCACTTTTTGTTTTCCTCCCAGTTGGTGTGCTCTCCTCAGTTGACCCAAAAACTGCAAAAAGTTTGGAACGCTTCACGAATTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATTGTTCCAATTTTAGTATATGTTCTCGGAAGAACAAATACTGGAGATGGGCGGTTCACTTATATAGGGGTATCTGGGAGAGCAGCCGACATCTCACGACTTGCGCCAACCACTATGCCTTGTACAGGGGATGGATGTGTGCTCCTGGGAAAGCTAGAAACCAAGGGGGCCCTGTTGTTGGACTCCAAGCATACTAGAAATACTAGACCAAATATAAGAAGGCAAAATATCCAAATCTCAAATATTACCCTTGTTATCCTTTTCCAGATGTATAGAAGGAATTGACGACTGGAATCTTCGACTCTCCGATTGGATGAAATCAGAAGCTGTAAACTGTGAATTCCTTGAGGCTGTCTGCTGGGAAGATGACACCGAAGTCTATGGATACATTCATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGACAGCCTACAACCCCGAAAACCTCAACAGATCAGCCAAGTGTTTTTGTATTTCTTTTTGATTCAATGAGCACTGGATCAGCAAAACGGTACAACAAACTTTTTTTGCGGAATCTCTTATTCTTTTTCCAGATCGTTCCCCAAAACCCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAATTCCCATTTGTAAACAAAGTTGGAGAGAACAGTATGCCGAATGGGTTTTCACTGTGGTTTGGTATGTCTTCCTGTTTGGTTGTGGCTACAGTTTTTTTTTCAGGAAAGTTATTAGAGCCAGT</canonical>
            <polymorphic>CTTAATTTGCAACCCTGGCACGCTTTTGCCGCATGGTTTTTTTCTTGACCNNNNNNNNNNCCGTGCCAGGGTTGCAAATTAGGCTCCGCCAATTTTTCCTCCCAGATGGTTCTTCCCACTTTTTGTTTTCCTCCCAGTTGGTGTGCTCTCCTCAGTTGACCCAAAAACTGCAAAAAGTTTGGAACGCTTCACGAATTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATTGTTCCAATTTTAGTATATGTTCTCGGAAGAACAAATACTGGAGATGGGCGGTTCACTTATATAGGGGTATCTGGGAGAGCAGCCGACATCTCACGACTTGCGCCAACCACTATGCCTTGTACAGGGGATGGATGTGTGCTCCTGGGAAAGCTAGAAACCAAGGGGGCCCTGTTGTTGGACTCCAAGCATACTAGAAATACTAGACCAAATATAAGAAGGCAAAATATCCAAATCTCAAATATTACCCTTGTTATCCTYTTCCAGATGTATAGAAGGAATTGACGACTGGAATCTTCGACTCTCCGATTGGATGAAATCAGAAGCTGTAAACTGTGAATTCCTTGAGGCTGTCTGCTGGGAAGATGACACCGAAGTCTATGGATACATTCATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGACAGCCTACAACCCCGAAAACCTCAACAGATCAGCCAAGTGTTTTTGTATTTCTTTTTGATTCAATGAGCACTGGATCAGCAAAACGGTACAACAAACTTTTTTTGCGGAATCTCTTATTCTTTTTCCAGATCGTTCCCCAAAACCCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAATTCCCATTTGTAAACAAAGTTGGAGAGAACAGTATGCCGAATGGGTTTTCACTGTGGTTTGGTATGTCTTCCTGTTTGGTTGTGGCTACAGTTTTTTTTTCAGGAAAGTTATTAGAGCCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAATATAAGAAGGCAAAATATC</pcr_primer_p1>
		<pcr_primer_p2>GTCTGGAATGACTTTAGATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CCAAATATAAGAAGGCAAAATATCCAAATCTCAAATATTACCCTTGTTATCCTTTTCCAGATGTATAGAAGGAATTGACGACTGGAATCTTCGACTCTCCGATTGGATGAAATCAGAAGCTGTAAACTGTGAATTCCTTGAGGCTGTCTGCTGGGAAGATGACACCGAAGTCTATGGATACATTCATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGAC</canonical_amplicon>
		<polymorphic_amplicon>CCAAATATAAGAAGGCAAAATATCCAAATCTCAAATATTACCCTTGTTATCCTYTTCCAGATGTATAGAAGGAATTGACGACTGGAATCTTCGACTCTCCGATTGGATGAAATCAGAAGCTGTAAACTGTGAATTCCTTGAGGCTGTCTGCTGGGAAGATGACACCGAAGTCTATGGATACATTCATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20713</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>148132</contig_pos>
        <strand>+</strand>
        <context>TCAAATATTA[C/T]CCTTGTTATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATACTAGACCAAATATAAGAAGGCAAAATATCCAAATCTCAAATATTA</left_flank>
        <right_flank>CCTTGTTATCCTTTTCCAGATGTATAGAAGGAATTGACGACTGGAATCTT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATGGGCGGAGCTTAATTTGCAACCCTGGCACGCTTTTGCCGCATGGTTTTTTTCTTGACCNNNNNNNNNNCCGTGCCAGGGTTGCAAATTAGGCTCCGCCAATTTTTCCTCCCAGATGGTTCTTCCCACTTTTTGTTTTCCTCCCAGTTGGTGTGCTCTCCTCAGTTGACCCAAAAACTGCAAAAAGTTTGGAACGCTTCACGAATTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATTGTTCCAATTTTAGTATATGTTCTCGGAAGAACAAATACTGGAGATGGGCGGTTCACTTATATAGGGGTATCTGGGAGAGCAGCCGACATCTCACGACTTGCGCCAACCACTATGCCTTGTACAGGGGATGGATGTGTGCTCCTGGGAAAGCTAGAAACCAAGGGGGCCCTGTTGTTGGACTCCAAGCATACTAGAAATACTAGACCAAATATAAGAAGGCAAAATATCCAAATCTCAAATATTACCCTTGTTATCCTTTTCCAGATGTATAGAAGGAATTGACGACTGGAATCTTCGACTCTCCGATTGGATGAAATCAGAAGCTGTAAACTGTGAATTCCTTGAGGCTGTCTGCTGGGAAGATGACACCGAAGTCTATGGATACATTCATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGACAGCCTACAACCCCGAAAACCTCAACAGATCAGCCAAGTGTTTTTGTATTTCTTTTTGATTCAATGAGCACTGGATCAGCAAAACGGTACAACAAACTTTTTTTGCGGAATCTCTTATTCTTTTTCCAGATCGTTCCCCAAAACCCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAATTCCCATTTGTAAACAAAGTTGGAGAGAACAGTATGCCGAATGGGTTTTCACTGTGGTTTGGTATGTCTTCCTGTTTGGTTGTGGCTACAGTTTTTTTTTCAGGAAAGT</canonical>
            <polymorphic>AAAATGGGCGGAGCTTAATTTGCAACCCTGGCACGCTTTTGCCGCATGGTTTTTTTCTTGACCNNNNNNNNNNCCGTGCCAGGGTTGCAAATTAGGCTCCGCCAATTTTTCCTCCCAGATGGTTCTTCCCACTTTTTGTTTTCCTCCCAGTTGGTGTGCTCTCCTCAGTTGACCCAAAAACTGCAAAAAGTTTGGAACGCTTCACGAATTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATTGTTCCAATTTTAGTATATGTTCTCGGAAGAACAAATACTGGAGATGGGCGGTTCACTTATATAGGGGTATCTGGGAGAGCAGCCGACATCTCACGACTTGCGCCAACCACTATGCCTTGTACAGGGGATGGATGTGTGCTCCTGGGAAAGCTAGAAACCAAGGGGGCCCTGTTGTTGGACTCCAAGCATACTAGAAATACTAGACCAAATATAAGAAGGCAAAATATCCAAATCTCAAATATTAYCCTTGTTATCCTTTTCCAGATGTATAGAAGGAATTGACGACTGGAATCTTCGACTCTCCGATTGGATGAAATCAGAAGCTGTAAACTGTGAATTCCTTGAGGCTGTCTGCTGGGAAGATGACACCGAAGTCTATGGATACATTCATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGACAGCCTACAACCCCGAAAACCTCAACAGATCAGCCAAGTGTTTTTGTATTTCTTTTTGATTCAATGAGCACTGGATCAGCAAAACGGTACAACAAACTTTTTTTGCGGAATCTCTTATTCTTTTTCCAGATCGTTCCCCAAAACCCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAATTCCCATTTGTAAACAAAGTTGGAGAGAACAGTATGCCGAATGGGTTTTCACTGTGGTTTGGTATGTCTTCCTGTTTGGTTGTGGCTACAGTTTTTTTTTCAGGAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGACTCCAAGCATACTAGAAATA</pcr_primer_p1>
		<pcr_primer_p2>AATTATTGTTATGTTCACTTTGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGACTCCAAGCATACTAGAAATACTAGACCAAATATAAGAAGGCAAAATATCCAAATCTCAAATATTACCCTTGTTATCCTTTTCCAGATGTATAGAAGGAATTGACGACTGGAATCTTCGACTCTCCGATTGGATGAAATCAGAAGCTGTAAACTGTGAATTCCTTGAGGCTGTCTGCTGGGAAGATGACACCGAAGTCTATGGATACATTCATACACAAATCATACCAAAGTGAACATAACAATAATT</canonical_amplicon>
		<polymorphic_amplicon>GGACTCCAAGCATACTAGAAATACTAGACCAAATATAAGAAGGCAAAATATCCAAATCTCAAATATTAYCCTTGTTATCCTTTTCCAGATGTATAGAAGGAATTGACGACTGGAATCTTCGACTCTCCGATTGGATGAAATCAGAAGCTGTAAACTGTGAATTCCTTGAGGCTGTCTGCTGGGAAGATGACACCGAAGTCTATGGATACATTCATACACAAATCATACCAAAGTGAACATAACAATAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20714</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>163842</contig_pos>
        <strand>+</strand>
        <context>TTTCTCTCTC[A/G]TTCTATTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAATTCTAGATGATTCTCTTCAATATGACGTTTACTTTTTTCTCTCTC</left_flank>
        <right_flank>TTCTATTTCTTCGTTCCTTTTTGTCTCATATATTTCTTCTCAATTCACTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTAACAACTGAGCCAAAAACACGTCGTCTCGGGAACTAAACGCGCGTGTTGTTTGCCGATTGGACGCTTTTTCCGCTGTCTCCGCCCATTGGGTCTCGCATGGAAGAGACGTCAGCTTGTGTCGATTTACGCCGTAATTCGAGTCACTTTTATTGATCAATGATTTTTTATTCGTTGAACGCAGAGACATCATGGAAAATACCGCTACATTGAAAAATCGATTAGAACCCTTGCGCATAGTTTTCTCATGACGCTCCTCTCTTCATTGCAAACATCGGATGACTACAAATAGTGTTGGAAGACAACATCTCCATGGAAACCGCTTTAGCCGTCTCTGTTTTTCGCGCAACTGAGCTAATAAAAACACCCTAGACTCGATCCCACTGGAAATGTGCTTTGTGAAGAGCCATTGTCTGCGCTCACTATTGCGAAACCTGCCGCATGCTAGAAAATTCTAGATGATTCTCTTCAATATGACGTTTACTTTTTTCTCTCTCATTCTATTTCTTCGTTCCTTTTTGTCTCATATATTTCTTCTCAATTCACTGTATTCCAGATGGCCACCGAGGGTGCACTCATCAAGGTAACTGTCAAATCCCCATCTCAACGATTCGATGTGGAGATTTCTCCAAGTGCCTCAATCTCTGAATTGAAAGACAAAGTTCTCCTTTCGGTGCCAACTGCCAACAAGGAACAAATATGCATAATTTATACTGGTAAAATTCTGAAAGACGACGAAACCCTTGTTCAGAACAGTAAGTTTTTGACGAAAAAAAAACAAAAATTTCATAAATCTGTCTGTTCTAGAAATCTCTGACGGTCACACTGTTCACTTGGTAGTTAGAAATCAAAATCGTCCAGCAGGACCTGCATCAAGTCCTGCAGCCGCTTCCACTGCTCCACCACCTTCTAGTCAACCATCCGCCGCTCCACCACCATCTGGAAATCCGTTTGGTGGATTCGGAACAATGGGAGGAGCATCGCCAGCCGATATTCTC</canonical>
            <polymorphic>TGGTAACAACTGAGCCAAAAACACGTCGTCTCGGGAACTAAACGCGCGTGTTGTTTGCCGATTGGACGCTTTTTCCGCTGTCTCCGCCCATTGGGTCTCGCATGGAAGAGACGTCAGCTTGTGTCGATTTACGCCGTAATTCGAGTCACTTTTATTGATCAATGATTTTTTATTCGTTGAACGCAGAGACATCATGGAAAATACCGCTACATTGAAAAATCGATTAGAACCCTTGCGCATAGTTTTCTCATGACGCTCCTCTCTTCATTGCAAACATCGGATGACTACAAATAGTGTTGGAAGACAACATCTCCATGGAAACCGCTTTAGCCGTCTCTGTTTTTCGCGCAACTGAGCTAATAAAAACACCCTAGACTCGATCCCACTGGAAATGTGCTTTGTGAAGAGCCATTGTCTGCGCTCACTATTGCGAAACCTGCCGCATGCTAGAAAATTCTAGATGATTCTCTTCAATATGACGTTTACTTTTTTCTCTCTCRTTCTATTTCTTCGTTCCTTTTTGTCTCATATATTTCTTCTCAATTCACTGTATTCCAGATGGCCACCGAGGGTGCACTCATCAAGGTAACTGTCAAATCCCCATCTCAACGATTCGATGTGGAGATTTCTCCAAGTGCCTCAATCTCTGAATTGAAAGACAAAGTTCTCCTTTCGGTGCCAACTGCCAACAAGGAACAAATATGCATAATTTATACTGGTAAAATTCTGAAAGACGACGAAACCCTTGTTCAGAACAGTAAGTTTTTGACGAAAAAAAAACAAAAATTTCATAAATCTGTCTGTTCTAGAAATCTCTGACGGTCACACTGTTCACTTGGTAGTTAGAAATCAAAATCGTCCAGCAGGACCTGCATCAAGTCCTGCAGCCGCTTCCACTGCTCCACCACCTTCTAGTCAACCATCCGCCGCTCCACCACCATCTGGAAATCCGTTTGGTGGATTCGGAACAATGGGAGGAGCATCGCCAGCCGATATTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGCTAATAAAAACACCCTAGA</pcr_primer_p1>
		<pcr_primer_p2>GATTTGACAGTTACCTTGATGAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGAGCTAATAAAAACACCCTAGACTCGATCCCACTGGAAATGTGCTTTGTGAAGAGCCATTGTCTGCGCTCACTATTGCGAAACCTGCCGCATGCTAGAAAATTCTAGATGATTCTCTTCAATATGACGTTTACTTTTTTCTCTCTCATTCTATTTCTTCGTTCCTTTTTGTCTCATATATTTCTTCTCAATTCACTGTATTCCAGATGGCCACCGAGGGTGCACTCATCAAGGTAACTGTCAAATC</canonical_amplicon>
		<polymorphic_amplicon>TGAGCTAATAAAAACACCCTAGACTCGATCCCACTGGAAATGTGCTTTGTGAAGAGCCATTGTCTGCGCTCACTATTGCGAAACCTGCCGCATGCTAGAAAATTCTAGATGATTCTCTTCAATATGACGTTTACTTTTTTCTCTCTCRTTCTATTTCTTCGTTCCTTTTTGTCTCATATATTTCTTCTCAATTCACTGTATTCCAGATGGCCACCGAGGGTGCACTCATCAAGGTAACTGTCAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20715</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>163945</contig_pos>
        <strand>+</strand>
        <context>TCAAATCCCC[A/G]TCTCAACGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCAGATGGCCACCGAGGGTGCACTCATCAAGGTAACTGTCAAATCCCC</left_flank>
        <right_flank>TCTCAACGATTCGATGTGGAGATTTCTCCAAGTGCCTCAATCTCTGAATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAGAGACGTCAGCTTGTGTCGATTTACGCCGTAATTCGAGTCACTTTTATTGATCAATGATTTTTTATTCGTTGAACGCAGAGACATCATGGAAAATACCGCTACATTGAAAAATCGATTAGAACCCTTGCGCATAGTTTTCTCATGACGCTCCTCTCTTCATTGCAAACATCGGATGACTACAAATAGTGTTGGAAGACAACATCTCCATGGAAACCGCTTTAGCCGTCTCTGTTTTTCGCGCAACTGAGCTAATAAAAACACCCTAGACTCGATCCCACTGGAAATGTGCTTTGTGAAGAGCCATTGTCTGCGCTCACTATTGCGAAACCTGCCGCATGCTAGAAAATTCTAGATGATTCTCTTCAATATGACGTTTACTTTTTTCTCTCTCATTCTATTTCTTCGTTCCTTTTTGTCTCATATATTTCTTCTCAATTCACTGTATTCCAGATGGCCACCGAGGGTGCACTCATCAAGGTAACTGTCAAATCCCCATCTCAACGATTCGATGTGGAGATTTCTCCAAGTGCCTCAATCTCTGAATTGAAAGACAAAGTTCTCCTTTCGGTGCCAACTGCCAACAAGGAACAAATATGCATAATTTATACTGGTAAAATTCTGAAAGACGACGAAACCCTTGTTCAGAACAGTAAGTTTTTGACGAAAAAAAAACAAAAATTTCATAAATCTGTCTGTTCTAGAAATCTCTGACGGTCACACTGTTCACTTGGTAGTTAGAAATCAAAATCGTCCAGCAGGACCTGCATCAAGTCCTGCAGCCGCTTCCACTGCTCCACCACCTTCTAGTCAACCATCCGCCGCTCCACCACCATCTGGAAATCCGTTTGGTGGATTCGGAACAATGGGAGGAGCATCGCCAGCCGATATTCTCAACAATCCGGATGCCGTGCGGAGCGTTATGGATAACCCAATTACTCAGCAGCTTCTCAGCAACCCAGAGTTCATGCGAACCATCATTCAATCGAATCCAGGTT</canonical>
            <polymorphic>GGAAGAGACGTCAGCTTGTGTCGATTTACGCCGTAATTCGAGTCACTTTTATTGATCAATGATTTTTTATTCGTTGAACGCAGAGACATCATGGAAAATACCGCTACATTGAAAAATCGATTAGAACCCTTGCGCATAGTTTTCTCATGACGCTCCTCTCTTCATTGCAAACATCGGATGACTACAAATAGTGTTGGAAGACAACATCTCCATGGAAACCGCTTTAGCCGTCTCTGTTTTTCGCGCAACTGAGCTAATAAAAACACCCTAGACTCGATCCCACTGGAAATGTGCTTTGTGAAGAGCCATTGTCTGCGCTCACTATTGCGAAACCTGCCGCATGCTAGAAAATTCTAGATGATTCTCTTCAATATGACGTTTACTTTTTTCTCTCTCATTCTATTTCTTCGTTCCTTTTTGTCTCATATATTTCTTCTCAATTCACTGTATTCCAGATGGCCACCGAGGGTGCACTCATCAAGGTAACTGTCAAATCCCCRTCTCAACGATTCGATGTGGAGATTTCTCCAAGTGCCTCAATCTCTGAATTGAAAGACAAAGTTCTCCTTTCGGTGCCAACTGCCAACAAGGAACAAATATGCATAATTTATACTGGTAAAATTCTGAAAGACGACGAAACCCTTGTTCAGAACAGTAAGTTTTTGACGAAAAAAAAACAAAAATTTCATAAATCTGTCTGTTCTAGAAATCTCTGACGGTCACACTGTTCACTTGGTAGTTAGAAATCAAAATCGTCCAGCAGGACCTGCATCAAGTCCTGCAGCCGCTTCCACTGCTCCACCACCTTCTAGTCAACCATCCGCCGCTCCACCACCATCTGGAAATCCGTTTGGTGGATTCGGAACAATGGGAGGAGCATCGCCAGCCGATATTCTCAACAATCCGGATGCCGTGCGGAGCGTTATGGATAACCCAATTACTCAGCAGCTTCTCAGCAACCCAGAGTTCATGCGAACCATCATTCAATCGAATCCAGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATTCTCTTCAATATGACGTTTA</pcr_primer_p1>
		<pcr_primer_p2>ATTATGCATATTTGTTCCTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGATTCTCTTCAATATGACGTTTACTTTTTTCTCTCTCATTCTATTTCTTCGTTCCTTTTTGTCTCATATATTTCTTCTCAATTCACTGTATTCCAGATGGCCACCGAGGGTGCACTCATCAAGGTAACTGTCAAATCCCCATCTCAACGATTCGATGTGGAGATTTCTCCAAGTGCCTCAATCTCTGAATTGAAAGACAAAGTTCTCCTTTCGGTGCCAACTGCCAACAAGGAACAAATATGCATAAT</canonical_amplicon>
		<polymorphic_amplicon>TGATTCTCTTCAATATGACGTTTACTTTTTTCTCTCTCATTCTATTTCTTCGTTCCTTTTTGTCTCATATATTTCTTCTCAATTCACTGTATTCCAGATGGCCACCGAGGGTGCACTCATCAAGGTAACTGTCAAATCCCCRTCTCAACGATTCGATGTGGAGATTTCTCCAAGTGCCTCAATCTCTGAATTGAAAGACAAAGTTCTCCTTTCGGTGCCAACTGCCAACAAGGAACAAATATGCATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20716</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>165755</contig_pos>
        <strand>+</strand>
        <context>ACCTACAGTT[A/G]TCTCCATAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCGTACACCTTCAAACCCCCTTTGTAGAGCACAGATTCAACCTACAGTT</left_flank>
        <right_flank>TCTCCATAGTTTTTCTCCGAATCCCTTCTTTCTGAAATTCTATTTTGGCT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATGCTCTCCATGATGTCCGATCCATCGGTGATGCAAGCTATGCAAAATCCACGTGTCAGTCAGGCTTTCCGTCAGATTCAAGACGGATTCGCCACATTGAGGCAAGAGGCTCCCCAGCTGCTGAACATGTTCCACGCACAAGCGGGACCTGGAATGGACCAGTTGTTCGGGAATGCAGCTGCCAATGCTGCCGCTGGAACCACGGGAACTCCGTCCGCTGCTTCAACTGCTGCAGGTGGTGTTGGAAATGGAATGAGTGGTCTTGCTGATTTGATCAGGCACATGAATATGGGTGGACGGGTGAGTAGTTTCCCTTCATTAAAAGTTAGAGATCGTTAATTGTATGAGCTGCAGCGAAAATTTGTGTTCTGAGGGTCTGATTTTTGGCAGTTCTTGAAATATTTCAACTTGTTCTCAAGGCTTTGGAATATCGTGAACCATAGAATACCGTACACCTTCAAACCCCCTTTGTAGAGCACAGATTCAACCTACAGTTATCTCCATAGTTTTTCTCCGAATCCCTTCTTTCTGAAATTCTATTTTGGCTGTTTTCCAACTCGTTGCCATCATCATCAACTCATTTCTGTTGAAAAGTCAGCAGCCCCAAATGAAGTTCCTTTCCCCTCACTCTCTTTTCATTTCATATATCAACGTTTTTGCTCAAATTTAGAAGCTGATGAGTTGTCTTCTGTCGAGTCACTCTGTGACATCGGCCGACGGAAGTGCCGCCGCCTCGCCAAGATAGAGTCTGTTCTGAATAATGTAACAAGACGACGATGTCTTGTGCTTTTCATCGCGCGGCGTCTTGTTTGACATGCTATGGATAAATGTTAGATAATGAGTATAAAGTGACGACGACAACTATGAGGAAGAGAGAGAGAGGAATCGAAAATCGTTTTCTGTTTGCTCTCAGAAAATGCAATTATCATATCGAATTTCTTTCTTGTCCCATCTTTCTCCGGCTGCTTCTTGTTTCTTTTTCAGAGTCTTATGATGA</canonical>
            <polymorphic>CAAATGCTCTCCATGATGTCCGATCCATCGGTGATGCAAGCTATGCAAAATCCACGTGTCAGTCAGGCTTTCCGTCAGATTCAAGACGGATTCGCCACATTGAGGCAAGAGGCTCCCCAGCTGCTGAACATGTTCCACGCACAAGCGGGACCTGGAATGGACCAGTTGTTCGGGAATGCAGCTGCCAATGCTGCCGCTGGAACCACGGGAACTCCGTCCGCTGCTTCAACTGCTGCAGGTGGTGTTGGAAATGGAATGAGTGGTCTTGCTGATTTGATCAGGCACATGAATATGGGTGGACGGGTGAGTAGTTTCCCTTCATTAAAAGTTAGAGATCGTTAATTGTATGAGCTGCAGCGAAAATTTGTGTTCTGAGGGTCTGATTTTTGGCAGTTCTTGAAATATTTCAACTTGTTCTCAAGGCTTTGGAATATCGTGAACCATAGAATACCGTACACCTTCAAACCCCCTTTGTAGAGCACAGATTCAACCTACAGTTRTCTCCATAGTTTTTCTCCGAATCCCTTCTTTCTGAAATTCTATTTTGGCTGTTTTCCAACTCGTTGCCATCATCATCAACTCATTTCTGTTGAAAAGTCAGCAGCCCCAAATGAAGTTCCTTTCCCCTCACTCTCTTTTCATTTCATATATCAACGTTTTTGCTCAAATTTAGAAGCTGATGAGTTGTCTTCTGTCGAGTCACTCTGTGACATCGGCCGACGGAAGTGCCGCCGCCTCGCCAAGATAGAGTCTGTTCTGAATAATGTAACAAGACGACGATGTCTTGTGCTTTTCATCGCGCGGCGTCTTGTTTGACATGCTATGGATAAATGTTAGATAATGAGTATAAAGTGACGACGACAACTATGAGGAAGAGAGAGAGAGGAATCGAAAATCGTTTTCTGTTTGCTCTCAGAAAATGCAATTATCATATCGAATTTCTTTCTTGTCCCATCTTTCTCCGGCTGCTTCTTGTTTCTTTTTCAGAGTCTTATGATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAATACCGTACACCTTCAAAC</pcr_primer_p1>
		<pcr_primer_p2>GAAGACAACTCATCAGCTTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAGAATACCGTACACCTTCAAACCCCCTTTGTAGAGCACAGATTCAACCTACAGTTATCTCCATAGTTTTTCTCCGAATCCCTTCTTTCTGAAATTCTATTTTGGCTGTTTTCCAACTCGTTGCCATCATCATCAACTCATTTCTGTTGAAAAGTCAGCAGCCCCAAATGAAGTTCCTTTCCCCTCACTCTCTTTTCATTTCATATATCAACGTTTTTGCTCAAATTTAGAAGCTGATGAGTTGTCTTC</canonical_amplicon>
		<polymorphic_amplicon>TAGAATACCGTACACCTTCAAACCCCCTTTGTAGAGCACAGATTCAACCTACAGTTRTCTCCATAGTTTTTCTCCGAATCCCTTCTTTCTGAAATTCTATTTTGGCTGTTTTCCAACTCGTTGCCATCATCATCAACTCATTTCTGTTGAAAAGTCAGCAGCCCCAAATGAAGTTCCTTTCCCCTCACTCTCTTTTCATTTCATATATCAACGTTTTTGCTCAAATTTAGAAGCTGATGAGTTGTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20717</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>165735</contig_pos>
        <strand>+</strand>
        <context>CTTTGTAGAG[C/T]ACAGATTCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATATCGTGAACCATAGAATACCGTACACCTTCAAACCCCCTTTGTAGAG</left_flank>
        <right_flank>ACAGATTCAACCTACAGTTATCTCCATAGTTTTTCTCCGAATCCCTTCTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATCCGCCGAAACTTCCCACAAATGCTCTCCATGATGTCCGATCCATCGGTGATGCAAGCTATGCAAAATCCACGTGTCAGTCAGGCTTTCCGTCAGATTCAAGACGGATTCGCCACATTGAGGCAAGAGGCTCCCCAGCTGCTGAACATGTTCCACGCACAAGCGGGACCTGGAATGGACCAGTTGTTCGGGAATGCAGCTGCCAATGCTGCCGCTGGAACCACGGGAACTCCGTCCGCTGCTTCAACTGCTGCAGGTGGTGTTGGAAATGGAATGAGTGGTCTTGCTGATTTGATCAGGCACATGAATATGGGTGGACGGGTGAGTAGTTTCCCTTCATTAAAAGTTAGAGATCGTTAATTGTATGAGCTGCAGCGAAAATTTGTGTTCTGAGGGTCTGATTTTTGGCAGTTCTTGAAATATTTCAACTTGTTCTCAAGGCTTTGGAATATCGTGAACCATAGAATACCGTACACCTTCAAACCCCCTTTGTAGAGCACAGATTCAACCTACAGTTATCTCCATAGTTTTTCTCCGAATCCCTTCTTTCTGAAATTCTATTTTGGCTGTTTTCCAACTCGTTGCCATCATCATCAACTCATTTCTGTTGAAAAGTCAGCAGCCCCAAATGAAGTTCCTTTCCCCTCACTCTCTTTTCATTTCATATATCAACGTTTTTGCTCAAATTTAGAAGCTGATGAGTTGTCTTCTGTCGAGTCACTCTGTGACATCGGCCGACGGAAGTGCCGCCGCCTCGCCAAGATAGAGTCTGTTCTGAATAATGTAACAAGACGACGATGTCTTGTGCTTTTCATCGCGCGGCGTCTTGTTTGACATGCTATGGATAAATGTTAGATAATGAGTATAAAGTGACGACGACAACTATGAGGAAGAGAGAGAGAGGAATCGAAAATCGTTTTCTGTTTGCTCTCAGAAAATGCAATTATCATATCGAATTTCTTTCTTGTCCCATCTTTCTCCGGCTGCTTCTTGTTTCT</canonical>
            <polymorphic>GTATCCGCCGAAACTTCCCACAAATGCTCTCCATGATGTCCGATCCATCGGTGATGCAAGCTATGCAAAATCCACGTGTCAGTCAGGCTTTCCGTCAGATTCAAGACGGATTCGCCACATTGAGGCAAGAGGCTCCCCAGCTGCTGAACATGTTCCACGCACAAGCGGGACCTGGAATGGACCAGTTGTTCGGGAATGCAGCTGCCAATGCTGCCGCTGGAACCACGGGAACTCCGTCCGCTGCTTCAACTGCTGCAGGTGGTGTTGGAAATGGAATGAGTGGTCTTGCTGATTTGATCAGGCACATGAATATGGGTGGACGGGTGAGTAGTTTCCCTTCATTAAAAGTTAGAGATCGTTAATTGTATGAGCTGCAGCGAAAATTTGTGTTCTGAGGGTCTGATTTTTGGCAGTTCTTGAAATATTTCAACTTGTTCTCAAGGCTTTGGAATATCGTGAACCATAGAATACCGTACACCTTCAAACCCCCTTTGTAGAGYACAGATTCAACCTACAGTTATCTCCATAGTTTTTCTCCGAATCCCTTCTTTCTGAAATTCTATTTTGGCTGTTTTCCAACTCGTTGCCATCATCATCAACTCATTTCTGTTGAAAAGTCAGCAGCCCCAAATGAAGTTCCTTTCCCCTCACTCTCTTTTCATTTCATATATCAACGTTTTTGCTCAAATTTAGAAGCTGATGAGTTGTCTTCTGTCGAGTCACTCTGTGACATCGGCCGACGGAAGTGCCGCCGCCTCGCCAAGATAGAGTCTGTTCTGAATAATGTAACAAGACGACGATGTCTTGTGCTTTTCATCGCGCGGCGTCTTGTTTGACATGCTATGGATAAATGTTAGATAATGAGTATAAAGTGACGACGACAACTATGAGGAAGAGAGAGAGAGGAATCGAAAATCGTTTTCTGTTTGCTCTCAGAAAATGCAATTATCATATCGAATTTCTTTCTTGTCCCATCTTTCTCCGGCTGCTTCTTGTTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>149 126 72 69 65 64 63 61 40 39 36 33 24 22 21 20 19 19 18 14 8 7 4 4 3</canonical_bands>
                <polymorphic_bands>173 126 72 69 65 64 63 61 40 39 36 33 22 21 20 19 19 18 14 8 7 4 4 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAATATCGTGAACCATAGAATA</pcr_primer_p1>
		<pcr_primer_p2>GCTTCTAAATTTGAGCAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAATATCGTGAACCATAGAATACCGTACACCTTCAAACCCCCTTTGTAGAGCACAGATTCAACCTACAGTTATCTCCATAGTTTTTCTCCGAATCCCTTCTTTCTGAAATTCTATTTTGGCTGTTTTCCAACTCGTTGCCATCATCATCAACTCATTTCTGTTGAAAAGTCAGCAGCCCCAAATGAAGTTCCTTTCCCCTCACTCTCTTTTCATTTCATATATCAACGTTTTTGCTCAAATTTAGAAGC</canonical_amplicon>
		<polymorphic_amplicon>GGAATATCGTGAACCATAGAATACCGTACACCTTCAAACCCCCTTTGTAGAGYACAGATTCAACCTACAGTTATCTCCATAGTTTTTCTCCGAATCCCTTCTTTCTGAAATTCTATTTTGGCTGTTTTCCAACTCGTTGCCATCATCATCAACTCATTTCTGTTGAAAAGTCAGCAGCCCCAAATGAAGTTCCTTTCCCCTCACTCTCTTTTCATTTCATATATCAACGTTTTTGCTCAAATTTAGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20718</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>221527</contig_pos>
        <strand>+</strand>
        <context>TTACAGGTAG[A/T]CTTCACCACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATTTTCCCCCTAACCTAACTTATTGCTCATCCTTATTATTACAGGTAG</left_flank>
        <right_flank>CTTCACCACGAAGTAGTTCCCGAACCATCATGTGGTTCGAGGAGAGTAGT</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACTTTGGAAAATTCGTTGATATCGAGGAAAATGTATTTTTCCTATCTATCCCTACCAAAACCAACCGATCGAAAATATGTATATTGACTCATTTTTCCACAATTTTTAGTCTCTGTTCAATGTTTACAATATATATTCCCTTCCAATGTGAATCTTCGCATTTTCCGCTAGAATTTCTATATACGCTCCAGTAACAGCTTGTGTTATTTTTCGTCGTACCGCCCGTTTTCCACACCACAAATTGCCACTTCGGCACGGCTCTTGTTTTCTTTTGTGTTTCAATTTAATCAAAACAGCCGTTGTTTCTCTAATTCTCTATTACTCTCTCACTCTCTTTCTCTAGAATTCGACTCGTTATCAATTCGGGTTCCAACCTTTCTGCGTCTCCATCATCTACTTTCTCTCCCCTGATTTCCTATTATATTTACTTCGTTCTCATATTTATTTCAAATTTTCCCCCTAACCTAACTTATTGCTCATCCTTATTATTACAGGTAGACTTCACCACGAAGTAGTTCCCGAACCATCATGTGGTTCGAGGAGAGTAGTTGGTCGAACCTCCGACTCACGGATATCCAGGAGGAATGGAGAGATCTGTGGCCGTCAAAAATCGAATTTATCACCTCAGCGATGGCATATCTATTTGCAATGACTAACTTTTTGAATTTGCCAAAATTGACACTCGAAAATGGAGGAGGTGAGTGATAAAGGCTTCAAGAAGGGGGTCCCTAGGGGGGAAACTTCAATTAGAGGGGGCAATTGTACTTTTCGTGGGTCCTCTGTGAACGGATCTCCCTATTGAGCATTTTTCAGTGAAATTTCGTTTTTCTACTAAAAATCCATTACGATTTCTACATAAAAAAAAGCGAAAACTGGCACCTGAAAATTTCGCGGACGCCGTTTGTGTCGATTTACGAGGCCTCGTCCTTGAATCCGCCATTGTATCAAACGAAATTGATTTCTTTGAATTTAGTGGGATTTTCTGATTTATATTCAGAT</canonical>
            <polymorphic>GACTTTGGAAAATTCGTTGATATCGAGGAAAATGTATTTTTCCTATCTATCCCTACCAAAACCAACCGATCGAAAATATGTATATTGACTCATTTTTCCACAATTTTTAGTCTCTGTTCAATGTTTACAATATATATTCCCTTCCAATGTGAATCTTCGCATTTTCCGCTAGAATTTCTATATACGCTCCAGTAACAGCTTGTGTTATTTTTCGTCGTACCGCCCGTTTTCCACACCACAAATTGCCACTTCGGCACGGCTCTTGTTTTCTTTTGTGTTTCAATTTAATCAAAACAGCCGTTGTTTCTCTAATTCTCTATTACTCTCTCACTCTCTTTCTCTAGAATTCGACTCGTTATCAATTCGGGTTCCAACCTTTCTGCGTCTCCATCATCTACTTTCTCTCCCCTGATTTCCTATTATATTTACTTCGTTCTCATATTTATTTCAAATTTTCCCCCTAACCTAACTTATTGCTCATCCTTATTATTACAGGTAGWCTTCACCACGAAGTAGTTCCCGAACCATCATGTGGTTCGAGGAGAGTAGTTGGTCGAACCTCCGACTCACGGATATCCAGGAGGAATGGAGAGATCTGTGGCCGTCAAAAATCGAATTTATCACCTCAGCGATGGCATATCTATTTGCAATGACTAACTTTTTGAATTTGCCAAAATTGACACTCGAAAATGGAGGAGGTGAGTGATAAAGGCTTCAAGAAGGGGGTCCCTAGGGGGGAAACTTCAATTAGAGGGGGCAATTGTACTTTTCGTGGGTCCTCTGTGAACGGATCTCCCTATTGAGCATTTTTCAGTGAAATTTCGTTTTTCTACTAAAAATCCATTACGATTTCTACATAAAAAAAAGCGAAAACTGGCACCTGAAAATTTCGCGGACGCCGTTTGTGTCGATTTACGAGGCCTCGTCCTTGAATCCGCCATTGTATCAAACGAAATTGATTTCTTTGAATTTAGTGGGATTTTCTGATTTATATTCAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>373 287 215 125</canonical_bands>
                <polymorphic_bands>660 215 125</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACTTCGTTCTCATATTTATTTCA</pcr_primer_p1>
		<pcr_primer_p2>GCAAATTCAAAAAGTTAGTCATT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTACTTCGTTCTCATATTTATTTCAAATTTTCCCCCTAACCTAACTTATTGCTCATCCTTATTATTACAGGTAGACTTCACCACGAAGTAGTTCCCGAACCATCATGTGGTTCGAGGAGAGTAGTTGGTCGAACCTCCGACTCACGGATATCCAGGAGGAATGGAGAGATCTGTGGCCGTCAAAAATCGAATTTATCACCTCAGCGATGGCATATCTATTTGCAATGACTAACTTTTTGAATTTGC</canonical_amplicon>
		<polymorphic_amplicon>TTACTTCGTTCTCATATTTATTTCAAATTTTCCCCCTAACCTAACTTATTGCTCATCCTTATTATTACAGGTAGWCTTCACCACGAAGTAGTTCCCGAACCATCATGTGGTTCGAGGAGAGTAGTTGGTCGAACCTCCGACTCACGGATATCCAGGAGGAATGGAGAGATCTGTGGCCGTCAAAAATCGAATTTATCACCTCAGCGATGGCATATCTATTTGCAATGACTAACTTTTTGAATTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20719</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>221766</contig_pos>
        <strand>+</strand>
        <context>CCTAGGGGGG[A/G]AACTTCAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGGAGGAGGTGAGTGATAAAGGCTTCAAGAAGGGGGTCCCTAGGGGGG</left_flank>
        <right_flank>AACTTCAATTAGAGGGGGCAATTGTACTTTTCGTGGGTCCTCTGTGAACG</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTGCCACTTCGGCACGGCTCTTGTTTTCTTTTGTGTTTCAATTTAATCAAAACAGCCGTTGTTTCTCTAATTCTCTATTACTCTCTCACTCTCTTTCTCTAGAATTCGACTCGTTATCAATTCGGGTTCCAACCTTTCTGCGTCTCCATCATCTACTTTCTCTCCCCTGATTTCCTATTATATTTACTTCGTTCTCATATTTATTTCAAATTTTCCCCCTAACCTAACTTATTGCTCATCCTTATTATTACAGGTAGACTTCACCACGAAGTAGTTCCCGAACCATCATGTGGTTCGAGGAGAGTAGTTGGTCGAACCTCCGACTCACGGATATCCAGGAGGAATGGAGAGATCTGTGGCCGTCAAAAATCGAATTTATCACCTCAGCGATGGCATATCTATTTGCAATGACTAACTTTTTGAATTTGCCAAAATTGACACTCGAAAATGGAGGAGGTGAGTGATAAAGGCTTCAAGAAGGGGGTCCCTAGGGGGGAAACTTCAATTAGAGGGGGCAATTGTACTTTTCGTGGGTCCTCTGTGAACGGATCTCCCTATTGAGCATTTTTCAGTGAAATTTCGTTTTTCTACTAAAAATCCATTACGATTTCTACATAAAAAAAAGCGAAAACTGGCACCTGAAAATTTCGCGGACGCCGTTTGTGTCGATTTACGAGGCCTCGTCCTTGAATCCGCCATTGTATCAAACGAAATTGATTTCTTTGAATTTAGTGGGATTTTCTGATTTATATTCAGATTTCTTACTATTAGTAATATTTTGATCGCTAGAATTTTTAGAATTTTTTAAGTCAAAAAATCCATGCTTGATTGTGACAATTGCCCGAGCGAGGAGAACATTTGTATTAGAGCAACGACATTCAAATTCTCAGGTGTCAGTGTTTTTTTTAAATCAGACAGTAATTCAATAAAAAAAAACAGGAACAACGGCTAAGATCAATGGAGTCAAAGTGGCACTTCAAATAGAGAGAGCACTTCT</canonical>
            <polymorphic>AAATTGCCACTTCGGCACGGCTCTTGTTTTCTTTTGTGTTTCAATTTAATCAAAACAGCCGTTGTTTCTCTAATTCTCTATTACTCTCTCACTCTCTTTCTCTAGAATTCGACTCGTTATCAATTCGGGTTCCAACCTTTCTGCGTCTCCATCATCTACTTTCTCTCCCCTGATTTCCTATTATATTTACTTCGTTCTCATATTTATTTCAAATTTTCCCCCTAACCTAACTTATTGCTCATCCTTATTATTACAGGTAGACTTCACCACGAAGTAGTTCCCGAACCATCATGTGGTTCGAGGAGAGTAGTTGGTCGAACCTCCGACTCACGGATATCCAGGAGGAATGGAGAGATCTGTGGCCGTCAAAAATCGAATTTATCACCTCAGCGATGGCATATCTATTTGCAATGACTAACTTTTTGAATTTGCCAAAATTGACACTCGAAAATGGAGGAGGTGAGTGATAAAGGCTTCAAGAAGGGGGTCCCTAGGGGGGRAACTTCAATTAGAGGGGGCAATTGTACTTTTCGTGGGTCCTCTGTGAACGGATCTCCCTATTGAGCATTTTTCAGTGAAATTTCGTTTTTCTACTAAAAATCCATTACGATTTCTACATAAAAAAAAGCGAAAACTGGCACCTGAAAATTTCGCGGACGCCGTTTGTGTCGATTTACGAGGCCTCGTCCTTGAATCCGCCATTGTATCAAACGAAATTGATTTCTTTGAATTTAGTGGGATTTTCTGATTTATATTCAGATTTCTTACTATTAGTAATATTTTGATCGCTAGAATTTTTAGAATTTTTTAAGTCAAAAAATCCATGCTTGATTGTGACAATTGCCCGAGCGAGGAGAACATTTGTATTAGAGCAACGACATTCAAATTCTCAGGTGTCAGTGTTTTTTTTAAATCAGACAGTAATTCAATAAAAAAAAACAGGAACAACGGCTAAGATCAATGGAGTCAAAGTGGCACTTCAAATAGAGAGAGCACTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAAATCGAATTTATCACCT</pcr_primer_p1>
		<pcr_primer_p2>GAAATCGTAATGGATTTTTAGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCAAAAATCGAATTTATCACCTCAGCGATGGCATATCTATTTGCAATGACTAACTTTTTGAATTTGCCAAAATTGACACTCGAAAATGGAGGAGGTGAGTGATAAAGGCTTCAAGAAGGGGGTCCCTAGGGGGGAAACTTCAATTAGAGGGGGCAATTGTACTTTTCGTGGGTCCTCTGTGAACGGATCTCCCTATTGAGCATTTTTCAGTGAAATTTCGTTTTTCTACTAAAAATCCATTACGATTTC</canonical_amplicon>
		<polymorphic_amplicon>TCAAAAATCGAATTTATCACCTCAGCGATGGCATATCTATTTGCAATGACTAACTTTTTGAATTTGCCAAAATTGACACTCGAAAATGGAGGAGGTGAGTGATAAAGGCTTCAAGAAGGGGGTCCCTAGGGGGGRAACTTCAATTAGAGGGGGCAATTGTACTTTTCGTGGGTCCTCTGTGAACGGATCTCCCTATTGAGCATTTTTCAGTGAAATTTCGTTTTTCTACTAAAAATCCATTACGATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20722</snp_id>
        <super_contig>c012800636.Contig1</super_contig>
        <contig_pos>19068</contig_pos>
        <strand></strand>
        <context>CGAAAAAAAA[G/A]GTCTGTGCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GATTTTTTCGCTAGAAATTTGAATTTTTCGCTAAAAAATTCGAAAAAAAA</left_flank>
        <right_flank>GTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATCGAGTTTCCTTATGTCTTTTTAGGTAAAAATGTCTTTTTCAGCCCGAAATTTGATCAATTTTAACCCAAACATGATTGAATTTCAGACAAATTCAAAATTCGCTAAAATATTCTTTCGCTGTGAAACTCCAACGATAAAGTTTAAGCATGTGCCTTTAAACCGTAATCGCAATTTTAAAATTGGGATTTTCAGCGGGTTTCAGCTAAATTTTCCAGCGATTTCTGTCGAAAAAATGCAAAACAAATAAATTGCTTGTATTTCTATCAAAATAGCTAAATTGAATCCCTAAAATGCACAAAAAATCCACTGAAAATCATAAAAATTAGTTTTCGCTGCGAAACATCAAACAGCAGTTCGAGTTATGTGCCTTTAAAGATTTTGAATTTTCTACCGTAATTTTCTGAAAATTTTGAATTTTTCGCTAATTTTCAGTGTTTTTCAGCGATTTTTTCGCTAGAAATTTGAATTTTTCGCTAAAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAAAGGGGACACACACACAAAAAAAAGTGCCGCGGAGGGCAAAAGGATAGCATGTGGGGGAGCTCTAATACAGGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGAGAGACGCAGAGAAAAGTGATGGTGGAGGGTAATGGTGGGGAAAAGGGGATACAAAAAAGTGATGTCATTGGTGTCAGACGGGAAGTGTAAACAGGCGGGTGAGAGGGGTCAGATTGGC</canonical>
            <polymorphic>AATATCGAGTTTCCTTATGTCTTTTTAGGTAAAAATGTCTTTTTCAGCCCGAAATTTGATCAATTTTAACCCAAACATGATTGAATTTCAGACAAATTCAAAATTCGCTAAAATATTCTTTCGCTGTGAAACTCCAACGATAAAGTTTAAGCATGTGCCTTTAAACCGTAATCGCAATTTTAAAATTGGGATTTTCAGCGGGTTTCAGCTAAATTTTCCAGCGATTTCTGTCGAAAAAATGCAAAACAAATAAATTGCTTGTATTTCTATCAAAATAGCTAAATTGAATCCCTAAAATGCACAAAAAATCCACTGAAAATCATAAAAATTAGTTTTCGCTGCGAAACATCAAACAGCAGTTCGAGTTATGTGCCTTTAAAGATTTTGAATTTTCTACCGTAATTTTCTGAAAATTTTGAATTTTTCGCTAATTTTCAGTGTTTTTCAGCGATTTTTTCGCTAGAAATTTGAATTTTTCGCTAAAAAATTCGAAAAAAAARGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAAAGGGGACACACACACAAAAAAAAGTGCCGCGGAGGGCAAAAGGATAGCATGTGGGGGAGCTCTAATACAGGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGAGAGACGCAGAGAAAAGTGATGGTGGAGGGTAATGGTGGGGAAAAGGGGATACAAAAAAGTGATGTCATTGGTGTCAGACGGGAAGTGTAAACAGGCGGGTGAGAGGGGTCAGATTGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAATTTTCTACCGTAATTTTC</pcr_primer_p1>
		<pcr_primer_p2>GATAGGTCAGATTCTGTGTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTGAATTTTCTACCGTAATTTTCTGAAAATTTTGAATTTTTCGCTAATTTTCAGTGTTTTTCAGCGATTTTTTCGCTAGAAATTTGAATTTTTCGCTAAAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATC</canonical_amplicon>
		<polymorphic_amplicon>TTGAATTTTCTACCGTAATTTTCTGAAAATTTTGAATTTTTCGCTAATTTTCAGTGTTTTTCAGCGATTTTTTCGCTAGAAATTTGAATTTTTCGCTAAAAAATTCGAAAAAAAARGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20723</snp_id>
        <super_contig>c012800636.Contig1</super_contig>
        <contig_pos>19165</contig_pos>
        <strand></strand>
        <context>AATTCAAATT[T/C]AAAAAAAATG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATT</left_flank>
        <right_flank>AAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACC</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAAATTCGCTAAAATATTCTTTCGCTGTGAAACTCCAACGATAAAGTTTAAGCATGTGCCTTTAAACCGTAATCGCAATTTTAAAATTGGGATTTTCAGCGGGTTTCAGCTAAATTTTCCAGCGATTTCTGTCGAAAAAATGCAAAACAAATAAATTGCTTGTATTTCTATCAAAATAGCTAAATTGAATCCCTAAAATGCACAAAAAATCCACTGAAAATCATAAAAATTAGTTTTCGCTGCGAAACATCAAACAGCAGTTCGAGTTATGTGCCTTTAAAGATTTTGAATTTTCTACCGTAATTTTCTGAAAATTTTGAATTTTTCGCTAATTTTCAGTGTTTTTCAGCGATTTTTTCGCTAGAAATTTGAATTTTTCGCTAAAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAAAGGGGACACACACACAAAAAAAAGTGCCGCGGAGGGCAAAAGGATAGCATGTGGGGGAGCTCTAATACAGGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGAGAGACGCAGAGAAAAGTGATGGTGGAGGGTAATGGTGGGGAAAAGGGGATACAAAAAAGTGATGTCATTGGTGTCAGACGGGAAGTGTAAACAGGCGGGTGAGAGGGGTCAGATTGGCCCGTCGTTCAAAGCTGCGGCCATTCGAAAGGGCAAGGTTTTGGTTTAATGGTCACTCTAGGGGCGAGTGTTGGGTAGAAGGCTCTAGAGCTCCAAAG</canonical>
            <polymorphic>TCAAAATTCGCTAAAATATTCTTTCGCTGTGAAACTCCAACGATAAAGTTTAAGCATGTGCCTTTAAACCGTAATCGCAATTTTAAAATTGGGATTTTCAGCGGGTTTCAGCTAAATTTTCCAGCGATTTCTGTCGAAAAAATGCAAAACAAATAAATTGCTTGTATTTCTATCAAAATAGCTAAATTGAATCCCTAAAATGCACAAAAAATCCACTGAAAATCATAAAAATTAGTTTTCGCTGCGAAACATCAAACAGCAGTTCGAGTTATGTGCCTTTAAAGATTTTGAATTTTCTACCGTAATTTTCTGAAAATTTTGAATTTTTCGCTAATTTTCAGTGTTTTTCAGCGATTTTTTCGCTAGAAATTTGAATTTTTCGCTAAAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTYAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAAAGGGGACACACACACAAAAAAAAGTGCCGCGGAGGGCAAAAGGATAGCATGTGGGGGAGCTCTAATACAGGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGAGAGACGCAGAGAAAAGTGATGGTGGAGGGTAATGGTGGGGAAAAGGGGATACAAAAAAGTGATGTCATTGGTGTCAGACGGGAAGTGTAAACAGGCGGGTGAGAGGGGTCAGATTGGCCCGTCGTTCAAAGCTGCGGCCATTCGAAAGGGCAAGGTTTTGGTTTAATGGTCACTCTAGGGGCGAGTGTTGGGTAGAAGGCTCTAGAGCTCCAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>505 176 110 101 46 24 15 7 6 6 4</canonical_bands>
                <polymorphic_bands>511 176 110 101 46 24 15 7 6 4</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 220 196 65 19</canonical_bands>
                <polymorphic_bands>720 196 65 19</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>449 220 196 52 50 19 14</canonical_bands>
                <polymorphic_bands>669 196 52 50 19 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAGATTTTCAATTTTTCTACAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTCTGCGTCTCTCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTYAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20724</snp_id>
        <super_contig>c012800636.Contig1</super_contig>
        <contig_pos>19238</contig_pos>
        <strand></strand>
        <context>AAAAAAAGAG[A/T]GAAAAAGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAG</left_flank>
        <right_flank>GAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGCAATTTTAAAATTGGGATTTTCAGCGGGTTTCAGCTAAATTTTCCAGCGATTTCTGTCGAAAAAATGCAAAACAAATAAATTGCTTGTATTTCTATCAAAATAGCTAAATTGAATCCCTAAAATGCACAAAAAATCCACTGAAAATCATAAAAATTAGTTTTCGCTGCGAAACATCAAACAGCAGTTCGAGTTATGTGCCTTTAAAGATTTTGAATTTTCTACCGTAATTTTCTGAAAATTTTGAATTTTTCGCTAATTTTCAGTGTTTTTCAGCGATTTTTTCGCTAGAAATTTGAATTTTTCGCTAAAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAAAGGGGACACACACACAAAAAAAAGTGCCGCGGAGGGCAAAAGGATAGCATGTGGGGGAGCTCTAATACAGGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGAGAGACGCAGAGAAAAGTGATGGTGGAGGGTAATGGTGGGGAAAAGGGGATACAAAAAAGTGATGTCATTGGTGTCAGACGGGAAGTGTAAACAGGCGGGTGAGAGGGGTCAGATTGGCCCGTCGTTCAAAGCTGCGGCCATTCGAAAGGGCAAGGTTTTGGTTTAATGGTCACTCTAGGGGCGAGTGTTGGGTAGAAGGCTCTAGAGCTCCAAAGAGCTTGTAAGCTATATTGAATGTTCTAGAAGCCTTGGTCTCTAGGGGGGAGTCCAGGGCTTCAGAGAGTGTTA</canonical>
            <polymorphic>ATCGCAATTTTAAAATTGGGATTTTCAGCGGGTTTCAGCTAAATTTTCCAGCGATTTCTGTCGAAAAAATGCAAAACAAATAAATTGCTTGTATTTCTATCAAAATAGCTAAATTGAATCCCTAAAATGCACAAAAAATCCACTGAAAATCATAAAAATTAGTTTTCGCTGCGAAACATCAAACAGCAGTTCGAGTTATGTGCCTTTAAAGATTTTGAATTTTCTACCGTAATTTTCTGAAAATTTTGAATTTTTCGCTAATTTTCAGTGTTTTTCAGCGATTTTTTCGCTAGAAATTTGAATTTTTCGCTAAAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAGWGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAAAGGGGACACACACACAAAAAAAAGTGCCGCGGAGGGCAAAAGGATAGCATGTGGGGGAGCTCTAATACAGGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGAGAGACGCAGAGAAAAGTGATGGTGGAGGGTAATGGTGGGGAAAAGGGGATACAAAAAAGTGATGTCATTGGTGTCAGACGGGAAGTGTAAACAGGCGGGTGAGAGGGGTCAGATTGGCCCGTCGTTCAAAGCTGCGGCCATTCGAAAGGGCAAGGTTTTGGTTTAATGGTCACTCTAGGGGCGAGTGTTGGGTAGAAGGCTCTAGAGCTCCAAAGAGCTTGTAAGCTATATTGAATGTTCTAGAAGCCTTGGTCTCTAGGGGGGAGTCCAGGGCTTCAGAGAGTGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAGATTTTCAATTTTTCTACAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTCTGCGTCTCTCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAGWGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20725</snp_id>
        <super_contig>c012800636.Contig1</super_contig>
        <contig_pos>19309</contig_pos>
        <strand>+</strand>
        <context>GTATGGGAGA[A/G]ATAAGAGAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGA</left_flank>
        <right_flank>ATAAGAGAGACGCAGAGAAAAAAGGGGACACACACACAAAAAAAAGTGCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAACAAATAAATTGCTTGTATTTCTATCAAAATAGCTAAATTGAATCCCTAAAATGCACAAAAAATCCACTGAAAATCATAAAAATTAGTTTTCGCTGCGAAACATCAAACAGCAGTTCGAGTTATGTGCCTTTAAAGATTTTGAATTTTCTACCGTAATTTTCTGAAAATTTTGAATTTTTCGCTAATTTTCAGTGTTTTTCAGCGATTTTTTCGCTAGAAATTTGAATTTTTCGCTAAAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAAAGGGGACACACACACAAAAAAAAGTGCCGCGGAGGGCAAAAGGATAGCATGTGGGGGAGCTCTAATACAGGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGAGAGACGCAGAGAAAAGTGATGGTGGAGGGTAATGGTGGGGAAAAGGGGATACAAAAAAGTGATGTCATTGGTGTCAGACGGGAAGTGTAAACAGGCGGGTGAGAGGGGTCAGATTGGCCCGTCGTTCAAAGCTGCGGCCATTCGAAAGGGCAAGGTTTTGGTTTAATGGTCACTCTAGGGGCGAGTGTTGGGTAGAAGGCTCTAGAGCTCCAAAGAGCTTGTAAGCTATATTGAATGTTCTAGAAGCCTTGGTCTCTAGGGGGGAGTCCAGGGCTTCAGAGAGTGTTAAAGCTTCTAGAAGTTTCTAGAACTTTCAGGGTGTCAAAACTTGGAAGTTCGTAGCTGGAAAAGGGTCTGGA</canonical>
            <polymorphic>CAAAACAAATAAATTGCTTGTATTTCTATCAAAATAGCTAAATTGAATCCCTAAAATGCACAAAAAATCCACTGAAAATCATAAAAATTAGTTTTCGCTGCGAAACATCAAACAGCAGTTCGAGTTATGTGCCTTTAAAGATTTTGAATTTTCTACCGTAATTTTCTGAAAATTTTGAATTTTTCGCTAATTTTCAGTGTTTTTCAGCGATTTTTTCGCTAGAAATTTGAATTTTTCGCTAAAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGARATAAGAGAGACGCAGAGAAAAAAGGGGACACACACACAAAAAAAAGTGCCGCGGAGGGCAAAAGGATAGCATGTGGGGGAGCTCTAATACAGGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGAGAGACGCAGAGAAAAGTGATGGTGGAGGGTAATGGTGGGGAAAAGGGGATACAAAAAAGTGATGTCATTGGTGTCAGACGGGAAGTGTAAACAGGCGGGTGAGAGGGGTCAGATTGGCCCGTCGTTCAAAGCTGCGGCCATTCGAAAGGGCAAGGTTTTGGTTTAATGGTCACTCTAGGGGCGAGTGTTGGGTAGAAGGCTCTAGAGCTCCAAAGAGCTTGTAAGCTATATTGAATGTTCTAGAAGCCTTGGTCTCTAGGGGGGAGTCCAGGGCTTCAGAGAGTGTTAAAGCTTCTAGAAGTTTCTAGAACTTTCAGGGTGTCAAAACTTGGAAGTTCGTAGCTGGAAAAGGGTCTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAACACAGAATCTGACCTATC</pcr_primer_p1>
		<pcr_primer_p2>GTATTAGAGCTCCCCCACAT</pcr_primer_p2>
		<pcr_amplicon_size>219</pcr_amplicon_size>
		<canonical_amplicon>GTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAAAGGGGACACACACACAAAAAAAAGTGCCGCGGAGGGCAAAAGGATAGCATGTGGGGGAGCTCTAATAC</canonical_amplicon>
		<polymorphic_amplicon>GTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGARATAAGAGAGACGCAGAGAAAAAAGGGGACACACACACAAAAAAAAGTGCCGCGGAGGGCAAAAGGATAGCATGTGGGGGAGCTCTAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20755</snp_id>
        <super_contig>c012800636.Contig1</super_contig>
        <contig_pos>19524</contig_pos>
        <strand>+</strand>
        <context>GTCATTGGTG[A/T]CAGACGGGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAGGGTAATGGTGGGGAAAAGGGGATACAAAAAAGTGATGTCATTGGTG</left_flank>
        <right_flank>CAGACGGGAAGTGTAAACAGGCGGGTGAGAGGGGTCAGATTGGCCCGTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGCTAGAAATTTGAATTTTTCGCTAAAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAAAGGGGACACACACACAAAAAAAAGTGCCGCGGAGGGCAAAAGGATAGCATGTGGGGGAGCTCTAATACAGGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGAGAGACGCAGAGAAAAGTGATGGTGGAGGGTAATGGTGGGGAAAAGGGGATACAAAAAAGTGATGTCATTGGTGTCAGACGGGAAGTGTAAACAGGCGGGTGAGAGGGGTCAGATTGGCCCGTCGTTCAAAGCTGCGGCCATTCGAAAGGGCAAGGTTTTGGTTTAATGGTCACTCTAGGGGCGAGTGTTGGGTAGAAGGCTCTAGAGCTCCAAAGAGCTTGTAAGCTATATTGAATGTTCTAGAAGCCTTGGTCTCTAGGGGGGAGTCCAGGGCTTCAGAGAGTGTTAAAGCTTCTAGAAGTTTCTAGAACTTTCAGGGTGTCAAAACTTGGAAGTTCGTAGCTGGAAAAGGGTCTGGAAGGCTGGAATGCTCTGGAAAGGTCTAGAAGCGTTTCTGGATGTCCTTGAGCTCCTAACAACCTTCTGGAAGTTTCTAGAAGTTTCTAGAAGCGTCCAGAACTATCTAGAAGACAATAAGTCGGTATTTGAATTTAGAAAAAAAAACTTGGCTAGAAAGCTCTAGAATCCTCGAGAGATCAGTCTGGATGTTTCCAAAAGTTATTGTTTCCTTTGA</canonical>
            <polymorphic>TCGCTAGAAATTTGAATTTTTCGCTAAAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAAAGGGGACACACACACAAAAAAAAGTGCCGCGGAGGGCAAAAGGATAGCATGTGGGGGAGCTCTAATACAGGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGAGAGACGCAGAGAAAAGTGATGGTGGAGGGTAATGGTGGGGAAAAGGGGATACAAAAAAGTGATGTCATTGGTGWCAGACGGGAAGTGTAAACAGGCGGGTGAGAGGGGTCAGATTGGCCCGTCGTTCAAAGCTGCGGCCATTCGAAAGGGCAAGGTTTTGGTTTAATGGTCACTCTAGGGGCGAGTGTTGGGTAGAAGGCTCTAGAGCTCCAAAGAGCTTGTAAGCTATATTGAATGTTCTAGAAGCCTTGGTCTCTAGGGGGGAGTCCAGGGCTTCAGAGAGTGTTAAAGCTTCTAGAAGTTTCTAGAACTTTCAGGGTGTCAAAACTTGGAAGTTCGTAGCTGGAAAAGGGTCTGGAAGGCTGGAATGCTCTGGAAAGGTCTAGAAGCGTTTCTGGATGTCCTTGAGCTCCTAACAACCTTCTGGAAGTTTCTAGAAGTTTCTAGAAGCGTCCAGAACTATCTAGAAGACAATAAGTCGGTATTTGAATTTAGAAAAAAAAACTTGGCTAGAAAGCTCTAGAATCCTCGAGAGATCAGTCTGGATGTTTCCAAAAGTTATTGTTTCCTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>331 296 171 167 35</canonical_bands>
                <polymorphic_bands>366 296 171 167</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTGGGGGAGCTCTAATAC</pcr_primer_p1>
		<pcr_primer_p2>CTAGAGTGACCATTAAACCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGTGGGGGAGCTCTAATACAGGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGAGAGACGCAGAGAAAAGTGATGGTGGAGGGTAATGGTGGGGAAAAGGGGATACAAAAAAGTGATGTCATTGGTGTCAGACGGGAAGTGTAAACAGGCGGGTGAGAGGGGTCAGATTGGCCCGTCGTTCAAAGCTGCGGCCATTCGAAAGGGCAAGGTTTTGGTTTAATGGTCACTCTAG</canonical_amplicon>
		<polymorphic_amplicon>ATGTGGGGGAGCTCTAATACAGGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGAGAGACGCAGAGAAAAGTGATGGTGGAGGGTAATGGTGGGGAAAAGGGGATACAAAAAAGTGATGTCATTGGTGWCAGACGGGAAGTGTAAACAGGCGGGTGAGAGGGGTCAGATTGGCCCGTCGTTCAAAGCTGCGGCCATTCGAAAGGGCAAGGTTTTGGTTTAATGGTCACTCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20756</snp_id>
        <super_contig>c012800636.Contig1</super_contig>
        <contig_pos>19567</contig_pos>
        <strand>+</strand>
        <context>GGTCAGATTG[A/G]CCCGTCGTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGGTGTCAGACGGGAAGTGTAAACAGGCGGGTGAGAGGGGTCAGATTG</left_flank>
        <right_flank>CCCGTCGTTCAAAGCTGCGGCCATTCGAAAGGGCAAGGTTTTGGTTTAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAAAGGGGACACACACACAAAAAAAAGTGCCGCGGAGGGCAAAAGGATAGCATGTGGGGGAGCTCTAATACAGGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGAGAGACGCAGAGAAAAGTGATGGTGGAGGGTAATGGTGGGGAAAAGGGGATACAAAAAAGTGATGTCATTGGTGTCAGACGGGAAGTGTAAACAGGCGGGTGAGAGGGGTCAGATTGGCCCGTCGTTCAAAGCTGCGGCCATTCGAAAGGGCAAGGTTTTGGTTTAATGGTCACTCTAGGGGCGAGTGTTGGGTAGAAGGCTCTAGAGCTCCAAAGAGCTTGTAAGCTATATTGAATGTTCTAGAAGCCTTGGTCTCTAGGGGGGAGTCCAGGGCTTCAGAGAGTGTTAAAGCTTCTAGAAGTTTCTAGAACTTTCAGGGTGTCAAAACTTGGAAGTTCGTAGCTGGAAAAGGGTCTGGAAGGCTGGAATGCTCTGGAAAGGTCTAGAAGCGTTTCTGGATGTCCTTGAGCTCCTAACAACCTTCTGGAAGTTTCTAGAAGTTTCTAGAAGCGTCCAGAACTATCTAGAAGACAATAAGTCGGTATTTGAATTTAGAAAAAAAAACTTGGCTAGAAAGCTCTAGAATCCTCGAGAGATCAGTCTGGATGTTTCCAAAAGTTATTGTTTCCTTTGATTCGTCTAAACAGCTGAATGTCGCTCTGGAGATGTTGTAGTCT</canonical>
            <polymorphic>GGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAAAGGGGACACACACACAAAAAAAAGTGCCGCGGAGGGCAAAAGGATAGCATGTGGGGGAGCTCTAATACAGGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGAGAGACGCAGAGAAAAGTGATGGTGGAGGGTAATGGTGGGGAAAAGGGGATACAAAAAAGTGATGTCATTGGTGTCAGACGGGAAGTGTAAACAGGCGGGTGAGAGGGGTCAGATTGRCCCGTCGTTCAAAGCTGCGGCCATTCGAAAGGGCAAGGTTTTGGTTTAATGGTCACTCTAGGGGCGAGTGTTGGGTAGAAGGCTCTAGAGCTCCAAAGAGCTTGTAAGCTATATTGAATGTTCTAGAAGCCTTGGTCTCTAGGGGGGAGTCCAGGGCTTCAGAGAGTGTTAAAGCTTCTAGAAGTTTCTAGAACTTTCAGGGTGTCAAAACTTGGAAGTTCGTAGCTGGAAAAGGGTCTGGAAGGCTGGAATGCTCTGGAAAGGTCTAGAAGCGTTTCTGGATGTCCTTGAGCTCCTAACAACCTTCTGGAAGTTTCTAGAAGTTTCTAGAAGCGTCCAGAACTATCTAGAAGACAATAAGTCGGTATTTGAATTTAGAAAAAAAAACTTGGCTAGAAAGCTCTAGAATCCTCGAGAGATCAGTCTGGATGTTTCCAAAAGTTATTGTTTCCTTTGATTCGTCTAAACAGCTGAATGTCGCTCTGGAGATGTTGTAGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>480 300 200 20</canonical_bands>
                <polymorphic_bands>480 320 200</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>200 177 123 100 70 62 51 47 30 27 21 20 18 14 10 8 8 8 6</canonical_bands>
                <polymorphic_bands>200 191 123 100 70 62 51 47 30 27 21 20 18 10 8 8 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTGGGGGAGCTCTAATAC</pcr_primer_p1>
		<pcr_primer_p2>CTAGAGTGACCATTAAACCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGTGGGGGAGCTCTAATACAGGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGAGAGACGCAGAGAAAAGTGATGGTGGAGGGTAATGGTGGGGAAAAGGGGATACAAAAAAGTGATGTCATTGGTGTCAGACGGGAAGTGTAAACAGGCGGGTGAGAGGGGTCAGATTGGCCCGTCGTTCAAAGCTGCGGCCATTCGAAAGGGCAAGGTTTTGGTTTAATGGTCACTCTAG</canonical_amplicon>
		<polymorphic_amplicon>ATGTGGGGGAGCTCTAATACAGGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGAGAGACGCAGAGAAAAGTGATGGTGGAGGGTAATGGTGGGGAAAAGGGGATACAAAAAAGTGATGTCATTGGTGTCAGACGGGAAGTGTAAACAGGCGGGTGAGAGGGGTCAGATTGRCCCGTCGTTCAAAGCTGCGGCCATTCGAAAGGGCAAGGTTTTGGTTTAATGGTCACTCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20757</snp_id>
        <super_contig>c012800636.Contig1</super_contig>
        <contig_pos>24910</contig_pos>
        <strand></strand>
        <context>GGATCAGAGA[G/A]CACTTTTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GACCCAAGAGTGCAAAAAACAAAGGAAGTCGTCTGTCTGGGGATCAGAGA</left_flank>
        <right_flank>CACTTTTTTTGGAGATTTTTTTGAAAAATAATTTTGAAAATCTTCCAAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTAGGCTCCGCCCACGTTGAGTTTCGAGGTTAGAGACGCAGCGTGTCTCGTTTCTCTGGCGCTCTAACCCCAAAATTGAGCGGAGCCTAGTCATGTTTAGGCTCATTTTGAAGCTGAGAACCTGGTAAATTCAAATTTTAACATTTCAAGCGTTTTCAGATTCTCAGTTCGCTGAAAAATGAGCATTTTCAGTCGAATAAAAAAATTTTGACTTGAAAAAGTGAAAACAAGAGCAGAAGGGGAGAGAAACGAATGGCTATGAGCATAGCATCTACATTTTTTTCTCTTTATTTTTTTTCACTGCGTCTCTTCACTCTCTCGTTTCCAGAGAGAATGGAACGGGACAGAGAATAACACGAAAACAAGCATCGCCCGGAGGGGAAAATGCTGAAAACGGAAATTGGAAAAAAAAATTCTAGATGGGGTAAGTGCGCTCCACTGGACAGAGGACCCAAGAGTGCAAAAAACAAAGGAAGTCGTCTGTCTGGGGATCAGAGAGCACTTTTTTTGGAGATTTTTTTGAAAAATAATTTTGAAAATCTTCCAAAATTTATTTTAAATGTAATTTTTGAAAAAATTCAGCTAAATATTTGAGTTCAGCAAGTTCATAGCTTCAAAATGAGTATAAACATGCCTAGGCTCCGCCCATTTTGAAGTTTCGACTTTAAAGGCGCATAGGGGGTGTGAAATTTCATAATGGGCGGAGCCTAAGCATGATTATACTCATTTTAAAGCCCTCAACGTGAGAAATTCAAAACTGTTAGTTTCATAAAATTAGAAGCAAAACGAACCAAGTTACGGTAGTTTCAATTTTTGAGATTACTGTATTTTTTGTAGTTCGATTCTTTTTTTCTTTTTTAAATCACACCATGTGGTTTCATGCATACAAAGATAAAAATTTTAAAAGGAAAACTATGCTGAATTTTTTTTGTTTACAATTGGTGGACAGGGAGCCGGACTGCAAAAACTACAGTAACCCTCTGAAATTGAAACTGCAGT</canonical>
            <polymorphic>CCTAGGCTCCGCCCACGTTGAGTTTCGAGGTTAGAGACGCAGCGTGTCTCGTTTCTCTGGCGCTCTAACCCCAAAATTGAGCGGAGCCTAGTCATGTTTAGGCTCATTTTGAAGCTGAGAACCTGGTAAATTCAAATTTTAACATTTCAAGCGTTTTCAGATTCTCAGTTCGCTGAAAAATGAGCATTTTCAGTCGAATAAAAAAATTTTGACTTGAAAAAGTGAAAACAAGAGCAGAAGGGGAGAGAAACGAATGGCTATGAGCATAGCATCTACATTTTTTTCTCTTTATTTTTTTTCACTGCGTCTCTTCACTCTCTCGTTTCCAGAGAGAATGGAACGGGACAGAGAATAACACGAAAACAAGCATCGCCCGGAGGGGAAAATGCTGAAAACGGAAATTGGAAAAAAAAATTCTAGATGGGGTAAGTGCGCTCCACTGGACAGAGGACCCAAGAGTGCAAAAAACAAAGGAAGTCGTCTGTCTGGGGATCAGAGARCACTTTTTTTGGAGATTTTTTTGAAAAATAATTTTGAAAATCTTCCAAAATTTATTTTAAATGTAATTTTTGAAAAAATTCAGCTAAATATTTGAGTTCAGCAAGTTCATAGCTTCAAAATGAGTATAAACATGCCTAGGCTCCGCCCATTTTGAAGTTTCGACTTTAAAGGCGCATAGGGGGTGTGAAATTTCATAATGGGCGGAGCCTAAGCATGATTATACTCATTTTAAAGCCCTCAACGTGAGAAATTCAAAACTGTTAGTTTCATAAAATTAGAAGCAAAACGAACCAAGTTACGGTAGTTTCAATTTTTGAGATTACTGTATTTTTTGTAGTTCGATTCTTTTTTTCTTTTTTAAATCACACCATGTGGTTTCATGCATACAAAGATAAAAATTTTAAAAGGAAAACTATGCTGAATTTTTTTTGTTTACAATTGGTGGACAGGGAGCCGGACTGCAAAAACTACAGTAACCCTCTGAAATTGAAACTGCAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTCTAGATGGGGTAAGTG</pcr_primer_p1>
		<pcr_primer_p2>TTGTATGCATGAAACCACAT</pcr_primer_p2>
		<pcr_amplicon_size>481</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTCTAGATGGGGTAAGTGCGCTCCACTGGACAGAGGACCCAAGAGTGCAAAAAACAAAGGAAGTCGTCTGTCTGGGGATCAGAGAGCACTTTTTTTGGAGATTTTTTTGAAAAATAATTTTGAAAATCTTCCAAAATTTATTTTAAATGTAATTTTTGAAAAAATTCAGCTAAATATTTGAGTTCAGCAAGTTCATAGCTTCAAAATGAGTATAAACATGCCTAGGCTCCGCCCATTTTGAAGTTTCGACTTTAAAGGCGCATAGGGGGTGTGAAATTTCATAATGGGCGGAGCCTAAGCATGATTATACTCATTTTAAAGCCCTCAACGTGAGAAATTCAAAACTGTTAGTTTCATAAAATTAGAAGCAAAACGAACCAAGTTACGGTAGTTTCAATTTTTGAGATTACTGTATTTTTTGTAGTTCGATTCTTTTTTTCTTTTTTAAATCACACCATGTGGTTTCATGCATACAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTCTAGATGGGGTAAGTGCGCTCCACTGGACAGAGGACCCAAGAGTGCAAAAAACAAAGGAAGTCGTCTGTCTGGGGATCAGAGARCACTTTTTTTGGAGATTTTTTTGAAAAATAATTTTGAAAATCTTCCAAAATTTATTTTAAATGTAATTTTTGAAAAAATTCAGCTAAATATTTGAGTTCAGCAAGTTCATAGCTTCAAAATGAGTATAAACATGCCTAGGCTCCGCCCATTTTGAAGTTTCGACTTTAAAGGCGCATAGGGGGTGTGAAATTTCATAATGGGCGGAGCCTAAGCATGATTATACTCATTTTAAAGCCCTCAACGTGAGAAATTCAAAACTGTTAGTTTCATAAAATTAGAAGCAAAACGAACCAAGTTACGGTAGTTTCAATTTTTGAGATTACTGTATTTTTTGTAGTTCGATTCTTTTTTTCTTTTTTAAATCACACCATGTGGTTTCATGCATACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20758</snp_id>
        <super_contig>c012800636.Contig1</super_contig>
        <contig_pos>24863</contig_pos>
        <strand></strand>
        <context>GACAGAGGAC[C/T]CAAGAGTGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGAAAAAAAAATTCTAGATGGGGTAAGTGCGCTCCACTGGACAGAGGAC</left_flank>
        <right_flank>CAAGAGTGCAAAAAACAAAGGAAGTCGTCTGTCTGGGGATCAGAGAGCAC</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATTTGAATTTAGCTCATTGTGAGCTTCAAAATGAGTATAAACACGCCTAGGCTCCGCCCACGTTGAGTTTCGAGGTTAGAGACGCAGCGTGTCTCGTTTCTCTGGCGCTCTAACCCCAAAATTGAGCGGAGCCTAGTCATGTTTAGGCTCATTTTGAAGCTGAGAACCTGGTAAATTCAAATTTTAACATTTCAAGCGTTTTCAGATTCTCAGTTCGCTGAAAAATGAGCATTTTCAGTCGAATAAAAAAATTTTGACTTGAAAAAGTGAAAACAAGAGCAGAAGGGGAGAGAAACGAATGGCTATGAGCATAGCATCTACATTTTTTTCTCTTTATTTTTTTTCACTGCGTCTCTTCACTCTCTCGTTTCCAGAGAGAATGGAACGGGACAGAGAATAACACGAAAACAAGCATCGCCCGGAGGGGAAAATGCTGAAAACGGAAATTGGAAAAAAAAATTCTAGATGGGGTAAGTGCGCTCCACTGGACAGAGGACCCAAGAGTGCAAAAAACAAAGGAAGTCGTCTGTCTGGGGATCAGAGAGCACTTTTTTTGGAGATTTTTTTGAAAAATAATTTTGAAAATCTTCCAAAATTTATTTTAAATGTAATTTTTGAAAAAATTCAGCTAAATATTTGAGTTCAGCAAGTTCATAGCTTCAAAATGAGTATAAACATGCCTAGGCTCCGCCCATTTTGAAGTTTCGACTTTAAAGGCGCATAGGGGGTGTGAAATTTCATAATGGGCGGAGCCTAAGCATGATTATACTCATTTTAAAGCCCTCAACGTGAGAAATTCAAAACTGTTAGTTTCATAAAATTAGAAGCAAAACGAACCAAGTTACGGTAGTTTCAATTTTTGAGATTACTGTATTTTTTGTAGTTCGATTCTTTTTTTCTTTTTTAAATCACACCATGTGGTTTCATGCATACAAAGATAAAAATTTTAAAAGGAAAACTATGCTGAATTTTTTTTGTTTACAATTGGTGGACAGGGA</canonical>
            <polymorphic>CTATTTGAATTTAGCTCATTGTGAGCTTCAAAATGAGTATAAACACGCCTAGGCTCCGCCCACGTTGAGTTTCGAGGTTAGAGACGCAGCGTGTCTCGTTTCTCTGGCGCTCTAACCCCAAAATTGAGCGGAGCCTAGTCATGTTTAGGCTCATTTTGAAGCTGAGAACCTGGTAAATTCAAATTTTAACATTTCAAGCGTTTTCAGATTCTCAGTTCGCTGAAAAATGAGCATTTTCAGTCGAATAAAAAAATTTTGACTTGAAAAAGTGAAAACAAGAGCAGAAGGGGAGAGAAACGAATGGCTATGAGCATAGCATCTACATTTTTTTCTCTTTATTTTTTTTCACTGCGTCTCTTCACTCTCTCGTTTCCAGAGAGAATGGAACGGGACAGAGAATAACACGAAAACAAGCATCGCCCGGAGGGGAAAATGCTGAAAACGGAAATTGGAAAAAAAAATTCTAGATGGGGTAAGTGCGCTCCACTGGACAGAGGACYCAAGAGTGCAAAAAACAAAGGAAGTCGTCTGTCTGGGGATCAGAGAGCACTTTTTTTGGAGATTTTTTTGAAAAATAATTTTGAAAATCTTCCAAAATTTATTTTAAATGTAATTTTTGAAAAAATTCAGCTAAATATTTGAGTTCAGCAAGTTCATAGCTTCAAAATGAGTATAAACATGCCTAGGCTCCGCCCATTTTGAAGTTTCGACTTTAAAGGCGCATAGGGGGTGTGAAATTTCATAATGGGCGGAGCCTAAGCATGATTATACTCATTTTAAAGCCCTCAACGTGAGAAATTCAAAACTGTTAGTTTCATAAAATTAGAAGCAAAACGAACCAAGTTACGGTAGTTTCAATTTTTGAGATTACTGTATTTTTTGTAGTTCGATTCTTTTTTTCTTTTTTAAATCACACCATGTGGTTTCATGCATACAAAGATAAAAATTTTAAAAGGAAAACTATGCTGAATTTTTTTTGTTTACAATTGGTGGACAGGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>366 247 190 78 65 54</canonical_bands>
                <polymorphic_bands>556 247 78 65 54</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGAGAATAACACGAAAACAAG</pcr_primer_p1>
		<pcr_primer_p2>TTGTATGCATGAAACCACAT</pcr_primer_p2>
		<pcr_amplicon_size>546</pcr_amplicon_size>
		<canonical_amplicon>ACAGAGAATAACACGAAAACAAGCATCGCCCGGAGGGGAAAATGCTGAAAACGGAAATTGGAAAAAAAAATTCTAGATGGGGTAAGTGCGCTCCACTGGACAGAGGACCCAAGAGTGCAAAAAACAAAGGAAGTCGTCTGTCTGGGGATCAGAGAGCACTTTTTTTGGAGATTTTTTTGAAAAATAATTTTGAAAATCTTCCAAAATTTATTTTAAATGTAATTTTTGAAAAAATTCAGCTAAATATTTGAGTTCAGCAAGTTCATAGCTTCAAAATGAGTATAAACATGCCTAGGCTCCGCCCATTTTGAAGTTTCGACTTTAAAGGCGCATAGGGGGTGTGAAATTTCATAATGGGCGGAGCCTAAGCATGATTATACTCATTTTAAAGCCCTCAACGTGAGAAATTCAAAACTGTTAGTTTCATAAAATTAGAAGCAAAACGAACCAAGTTACGGTAGTTTCAATTTTTGAGATTACTGTATTTTTTGTAGTTCGATTCTTTTTTTCTTTTTTAAATCACACCATGTGGTTTCATGCATACAA</canonical_amplicon>
		<polymorphic_amplicon>ACAGAGAATAACACGAAAACAAGCATCGCCCGGAGGGGAAAATGCTGAAAACGGAAATTGGAAAAAAAAATTCTAGATGGGGTAAGTGCGCTCCACTGGACAGAGGACYCAAGAGTGCAAAAAACAAAGGAAGTCGTCTGTCTGGGGATCAGAGAGCACTTTTTTTGGAGATTTTTTTGAAAAATAATTTTGAAAATCTTCCAAAATTTATTTTAAATGTAATTTTTGAAAAAATTCAGCTAAATATTTGAGTTCAGCAAGTTCATAGCTTCAAAATGAGTATAAACATGCCTAGGCTCCGCCCATTTTGAAGTTTCGACTTTAAAGGCGCATAGGGGGTGTGAAATTTCATAATGGGCGGAGCCTAAGCATGATTATACTCATTTTAAAGCCCTCAACGTGAGAAATTCAAAACTGTTAGTTTCATAAAATTAGAAGCAAAACGAACCAAGTTACGGTAGTTTCAATTTTTGAGATTACTGTATTTTTTGTAGTTCGATTCTTTTTTTCTTTTTTAAATCACACCATGTGGTTTCATGCATACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20759</snp_id>
        <super_contig>c012800636.Contig1</super_contig>
        <contig_pos>24809</contig_pos>
        <strand></strand>
        <context>CTGAAAACGG[A/G]AATTGGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAATAACACGAAAACAAGCATCGCCCGGAGGGGAAAATGCTGAAAACGG</left_flank>
        <right_flank>AATTGGAAAAAAAAATTCTAGATGGGGTAAGTGCGCTCCACTGGACAGAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTGGTTTTTCTCATAAATCCCTGAATTTCCAAAATTTTGAATCAAAACTTAACTATTTGAATTTAGCTCATTGTGAGCTTCAAAATGAGTATAAACACGCCTAGGCTCCGCCCACGTTGAGTTTCGAGGTTAGAGACGCAGCGTGTCTCGTTTCTCTGGCGCTCTAACCCCAAAATTGAGCGGAGCCTAGTCATGTTTAGGCTCATTTTGAAGCTGAGAACCTGGTAAATTCAAATTTTAACATTTCAAGCGTTTTCAGATTCTCAGTTCGCTGAAAAATGAGCATTTTCAGTCGAATAAAAAAATTTTGACTTGAAAAAGTGAAAACAAGAGCAGAAGGGGAGAGAAACGAATGGCTATGAGCATAGCATCTACATTTTTTTCTCTTTATTTTTTTTCACTGCGTCTCTTCACTCTCTCGTTTCCAGAGAGAATGGAACGGGACAGAGAATAACACGAAAACAAGCATCGCCCGGAGGGGAAAATGCTGAAAACGGAAATTGGAAAAAAAAATTCTAGATGGGGTAAGTGCGCTCCACTGGACAGAGGACCCAAGAGTGCAAAAAACAAAGGAAGTCGTCTGTCTGGGGATCAGAGAGCACTTTTTTTGGAGATTTTTTTGAAAAATAATTTTGAAAATCTTCCAAAATTTATTTTAAATGTAATTTTTGAAAAAATTCAGCTAAATATTTGAGTTCAGCAAGTTCATAGCTTCAAAATGAGTATAAACATGCCTAGGCTCCGCCCATTTTGAAGTTTCGACTTTAAAGGCGCATAGGGGGTGTGAAATTTCATAATGGGCGGAGCCTAAGCATGATTATACTCATTTTAAAGCCCTCAACGTGAGAAATTCAAAACTGTTAGTTTCATAAAATTAGAAGCAAAACGAACCAAGTTACGGTAGTTTCAATTTTTGAGATTACTGTATTTTTTGTAGTTCGATTCTTTTTTTCTTTTTTAAATCACACCATGTGGTTTCATGCATACAAAGATAAAAA</canonical>
            <polymorphic>TATTGGTTTTTCTCATAAATCCCTGAATTTCCAAAATTTTGAATCAAAACTTAACTATTTGAATTTAGCTCATTGTGAGCTTCAAAATGAGTATAAACACGCCTAGGCTCCGCCCACGTTGAGTTTCGAGGTTAGAGACGCAGCGTGTCTCGTTTCTCTGGCGCTCTAACCCCAAAATTGAGCGGAGCCTAGTCATGTTTAGGCTCATTTTGAAGCTGAGAACCTGGTAAATTCAAATTTTAACATTTCAAGCGTTTTCAGATTCTCAGTTCGCTGAAAAATGAGCATTTTCAGTCGAATAAAAAAATTTTGACTTGAAAAAGTGAAAACAAGAGCAGAAGGGGAGAGAAACGAATGGCTATGAGCATAGCATCTACATTTTTTTCTCTTTATTTTTTTTCACTGCGTCTCTTCACTCTCTCGTTTCCAGAGAGAATGGAACGGGACAGAGAATAACACGAAAACAAGCATCGCCCGGAGGGGAAAATGCTGAAAACGGRAATTGGAAAAAAAAATTCTAGATGGGGTAAGTGCGCTCCACTGGACAGAGGACCCAAGAGTGCAAAAAACAAAGGAAGTCGTCTGTCTGGGGATCAGAGAGCACTTTTTTTGGAGATTTTTTTGAAAAATAATTTTGAAAATCTTCCAAAATTTATTTTAAATGTAATTTTTGAAAAAATTCAGCTAAATATTTGAGTTCAGCAAGTTCATAGCTTCAAAATGAGTATAAACATGCCTAGGCTCCGCCCATTTTGAAGTTTCGACTTTAAAGGCGCATAGGGGGTGTGAAATTTCATAATGGGCGGAGCCTAAGCATGATTATACTCATTTTAAAGCCCTCAACGTGAGAAATTCAAAACTGTTAGTTTCATAAAATTAGAAGCAAAACGAACCAAGTTACGGTAGTTTCAATTTTTGAGATTACTGTATTTTTTGTAGTTCGATTCTTTTTTTCTTTTTTAAATCACACCATGTGGTTTCATGCATACAAAGATAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGAAACGAATGGCTATGAG</pcr_primer_p1>
		<pcr_primer_p2>ACAGACGACTTCCTTTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AGAGAAACGAATGGCTATGAGCATAGCATCTACATTTTTTTCTCTTTATTTTTTTTCACTGCGTCTCTTCACTCTCTCGTTTCCAGAGAGAATGGAACGGGACAGAGAATAACACGAAAACAAGCATCGCCCGGAGGGGAAAATGCTGAAAACGGAAATTGGAAAAAAAAATTCTAGATGGGGTAAGTGCGCTCCACTGGACAGAGGACCCAAGAGTGCAAAAAACAAAGGAAGTCGTCTGT</canonical_amplicon>
		<polymorphic_amplicon>AGAGAAACGAATGGCTATGAGCATAGCATCTACATTTTTTTCTCTTTATTTTTTTTCACTGCGTCTCTTCACTCTCTCGTTTCCAGAGAGAATGGAACGGGACAGAGAATAACACGAAAACAAGCATCGCCCGGAGGGGAAAATGCTGAAAACGGRAATTGGAAAAAAAAATTCTAGATGGGGTAAGTGCGCTCCACTGGACAGAGGACCCAAGAGTGCAAAAAACAAAGGAAGTCGTCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20760</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>17063</contig_pos>
        <strand>+</strand>
        <context>ATATTATCAT[C/T]ATTAGAACYG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCAAAAAAAAAATTGAGAATGGGGTACCTGGACGCTCGATATTATCAT</left_flank>
        <right_flank>ATTAGAACTGATTGGCATTCTTGGCACGTTTCTCGAAACACTCTAAAAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGGTTGGATTGAAACAGGTTTGAGTTACATACATTTGAGAGAACATTATGGGATGTTGAAGTAAATGCGCTCTAACAAACTTCAAATTTGATAATTATAAAAAATTCGAAAAAGTAAAATAATCTACAGAAAATTTCCTATAAAATAGTGTAAAAATCTTAAAATTTGCCTATTTTTAAAACTCAATTAACTCACCTTCAAATGAAATGGAGCACCTTCAGCGATGACCAAATTGCTAATACGCTGGTTCGACTGGAGGGTCTCAAATTTTGGGGTTTTTTCAAAAAAAAAATTTGAGAATGGGGTACCTGGACGCTCGATATTATCATTATTAGAATCGATTGGCATTCTTGGCACGTTCTCGAAACAGGAGCACCTTCAGCGATGACCAAATTGCTAATACCTTCGGTCGCTGGTTCGACTGGAGGATCTCAAATTTTGGGGGTTTTTCAAAAAAAAAATTGAGAATGGGGTACCTGGACGCTCGATATTATCATCATTAGAACTGATTGGCATTCTTGGCACGTTTCTCGAAACACTCTAAAAATTTTCTGTGAAAAAATTTCAAAAATCAAAAAATGTAATAATTTTTTGGCAAAAATTACATTTTTGGGTGGTCGGATAGAGGTAAAAAAAAGTGTCAGAACATAGATAAGAAACGGGTTTTCAAGGTCGATTTCATGCTTTTTTCGGTTAAACCGAAAAAAAAGATCAGAAATTGAAACAGAACAAAAAATTTATGGAACAGCTGACAAGAAGAATCAAAGGGACCACTGCCACATTTTTTTTCGTTGTAATGGTTGCGAGAACTGAGCAAAAAAGAGCAAGAGAGAGAGAGAAAAGTTGAGAAATAAAATTTTTTTGTGAAATTTTTTTTCCGAAAATTCCTAAATTTCCAATTTCAGATCTAGAATGTTCCGGCATAAACTTAATATGCTCTAAAAAAGAAGCAAACAATTTTTTCACCGAGAGGAATCGCACCCGGGTCGTCAGGTTGG</canonical>
            <polymorphic>GAAGGTTGGATTGAAACAGGTTTGAGTTACATACATTTGAGAGAACATTATGGGATGTTGAAGTAAATGCGCTCTAACAAACTTCAAATTTGATAATTATAAAAAATTCGAAAAAGTAAAATAATCTACAGAAAATTTCCTATAAAATAGTGTAAAAATCTTAAAATTTGCCTATTTTTAAAACTCAATTAACTCACCTTCAAATGAAATGGAGCACCTTCAGCGATGACCAAATTGCTAATACGCTGGTTCGACTGGAGGGTCTCAAATTTTGGGGTTTTTTCAAAAAAAAAATTTGAGAATGGGGTACCTGGACGCTCGATATTATCATTATTAGAATCGATTGGCATTCTTGGCACGTTCTCGAAACAGGAGCACCTTCAGCGATGACCAAATTGCTAATACCTTCGGTCGCTGGTTCGACTGGAGGATCTCAAATTTTGGGGGTTTTTCAAAAAAAAAATTGAGAATGGGGTACCTGGACGCTCGATATTATCATYATTAGAACTGATTGGCATTCTTGGCACGTTTCTCGAAACACTCTAAAAATTTTCTGTGAAAAAATTTCAAAAATCAAAAAATGTAATAATTTTTTGGCAAAAATTACATTTTTGGGTGGTCGGATAGAGGTAAAAAAAAGTGTCAGAACATAGATAAGAAACGGGTTTTCAAGGTCGATTTCATGCTTTTTTCGGTTAAACCGAAAAAAAAGATCAGAAATTGAAACAGAACAAAAAATTTATGGAACAGCTGACAAGAAGAATCAAAGGGACCACTGCCACATTTTTTTTCGTTGTAATGGTTGCGAGAACTGAGCAAAAAAGAGCAAGAGAGAGAGAGAAAAGTTGAGAAATAAAATTTTTTTGTGAAATTTTTTTTCCGAAAATTCCTAAATTTCCAATTTCAGATCTAGAATGTTCCGGCATAAACTTAATATGCTCTAAAAAAGAAGCAAACAATTTTTTCACCGAGAGGAATCGCACCCGGGTCGTCAGGTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGACCAAATTGCTAATACCTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTACCTCTATCCGACCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGACCAAATTGCTAATACCTTCGGTCGCTGGTTCGACTGGAGGATCTCAAATTTTGGGGGTTTTTCAAAAAAAAAATTGAGAATGGGGTACCTGGACGCTCGATATTATCATCATTAGAACTGATTGGCATTCTTGGCACGTTTCTCGAAACACTCTAAAAATTTTCTGTGAAAAAATTTCAAAAATCAAAAAATGTAATAATTTTTTGGCAAAAATTACATTTTTGGGTGGTCGGATAGAGGTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATGACCAAATTGCTAATACCTTCGGTCGCTGGTTCGACTGGAGGATCTCAAATTTTGGGGGTTTTTCAAAAAAAAAATTGAGAATGGGGTACCTGGACGCTCGATATTATCATYATTAGAACTGATTGGCATTCTTGGCACGTTTCTCGAAACACTCTAAAAATTTTCTGTGAAAAAATTTCAAAAATCAAAAAATGTAATAATTTTTTGGCAAAAATTACATTTTTGGGTGGTCGGATAGAGGTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20761</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>17072</contig_pos>
        <strand>+</strand>
        <context>TYATTAGAAC[C/T]GATTGGCATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATTGAGAATGGGGTACCTGGACGCTCGATATTATCATCATTAGAAC</left_flank>
        <right_flank>GATTGGCATTCTTGGCACGTTTCTCGAAACACTCTAAAAATTTTCTGTGA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGAAACAGGTTTGAGTTACATACATTTGAGAGAACATTATGGGATGTTGAAGTAAATGCGCTCTAACAAACTTCAAATTTGATAATTATAAAAAATTCGAAAAAGTAAAATAATCTACAGAAAATTTCCTATAAAATAGTGTAAAAATCTTAAAATTTGCCTATTTTTAAAACTCAATTAACTCACCTTCAAATGAAATGGAGCACCTTCAGCGATGACCAAATTGCTAATACGCTGGTTCGACTGGAGGGTCTCAAATTTTGGGGTTTTTTCAAAAAAAAAATTTGAGAATGGGGTACCTGGACGCTCGATATTATCATTATTAGAATCGATTGGCATTCTTGGCACGTTCTCGAAACAGGAGCACCTTCAGCGATGACCAAATTGCTAATACCTTCGGTCGCTGGTTCGACTGGAGGATCTCAAATTTTGGGGGTTTTTCAAAAAAAAAATTGAGAATGGGGTACCTGGACGCTCGATATTATCATCATTAGAACTGATTGGCATTCTTGGCACGTTTCTCGAAACACTCTAAAAATTTTCTGTGAAAAAATTTCAAAAATCAAAAAATGTAATAATTTTTTGGCAAAAATTACATTTTTGGGTGGTCGGATAGAGGTAAAAAAAAGTGTCAGAACATAGATAAGAAACGGGTTTTCAAGGTCGATTTCATGCTTTTTTCGGTTAAACCGAAAAAAAAGATCAGAAATTGAAACAGAACAAAAAATTTATGGAACAGCTGACAAGAAGAATCAAAGGGACCACTGCCACATTTTTTTTCGTTGTAATGGTTGCGAGAACTGAGCAAAAAAGAGCAAGAGAGAGAGAGAAAAGTTGAGAAATAAAATTTTTTTGTGAAATTTTTTTTCCGAAAATTCCTAAATTTCCAATTTCAGATCTAGAATGTTCCGGCATAAACTTAATATGCTCTAAAAAAGAAGCAAACAATTTTTTCACCGAGAGGAATCGCACCCGGGTCGTCAGGTTGGTAGTGAAAA</canonical>
            <polymorphic>ATTGAAACAGGTTTGAGTTACATACATTTGAGAGAACATTATGGGATGTTGAAGTAAATGCGCTCTAACAAACTTCAAATTTGATAATTATAAAAAATTCGAAAAAGTAAAATAATCTACAGAAAATTTCCTATAAAATAGTGTAAAAATCTTAAAATTTGCCTATTTTTAAAACTCAATTAACTCACCTTCAAATGAAATGGAGCACCTTCAGCGATGACCAAATTGCTAATACGCTGGTTCGACTGGAGGGTCTCAAATTTTGGGGTTTTTTCAAAAAAAAAATTTGAGAATGGGGTACCTGGACGCTCGATATTATCATTATTAGAATCGATTGGCATTCTTGGCACGTTCTCGAAACAGGAGCACCTTCAGCGATGACCAAATTGCTAATACCTTCGGTCGCTGGTTCGACTGGAGGATCTCAAATTTTGGGGGTTTTTCAAAAAAAAAATTGAGAATGGGGTACCTGGACGCTCGATATTATCATCATTAGAACYGATTGGCATTCTTGGCACGTTTCTCGAAACACTCTAAAAATTTTCTGTGAAAAAATTTCAAAAATCAAAAAATGTAATAATTTTTTGGCAAAAATTACATTTTTGGGTGGTCGGATAGAGGTAAAAAAAAGTGTCAGAACATAGATAAGAAACGGGTTTTCAAGGTCGATTTCATGCTTTTTTCGGTTAAACCGAAAAAAAAGATCAGAAATTGAAACAGAACAAAAAATTTATGGAACAGCTGACAAGAAGAATCAAAGGGACCACTGCCACATTTTTTTTCGTTGTAATGGTTGCGAGAACTGAGCAAAAAAGAGCAAGAGAGAGAGAGAAAAGTTGAGAAATAAAATTTTTTTGTGAAATTTTTTTTCCGAAAATTCCTAAATTTCCAATTTCAGATCTAGAATGTTCCGGCATAAACTTAATATGCTCTAAAAAAGAAGCAAACAATTTTTTCACCGAGAGGAATCGCACCCGGGTCGTCAGGTTGGTAGTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGACCAAATTGCTAATACCTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTACCTCTATCCGACCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGACCAAATTGCTAATACCTTCGGTCGCTGGTTCGACTGGAGGATCTCAAATTTTGGGGGTTTTTCAAAAAAAAAATTGAGAATGGGGTACCTGGACGCTCGATATTATCATCATTAGAACTGATTGGCATTCTTGGCACGTTTCTCGAAACACTCTAAAAATTTTCTGTGAAAAAATTTCAAAAATCAAAAAATGTAATAATTTTTTGGCAAAAATTACATTTTTGGGTGGTCGGATAGAGGTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATGACCAAATTGCTAATACCTTCGGTCGCTGGTTCGACTGGAGGATCTCAAATTTTGGGGGTTTTTCAAAAAAAAAATTGAGAATGGGGTACCTGGACGCTCGATATTATCATCATTAGAACYGATTGGCATTCTTGGCACGTTTCTCGAAACACTCTAAAAATTTTCTGTGAAAAAATTTCAAAAATCAAAAAATGTAATAATTTTTTGGCAAAAATTACATTTTTGGGTGGTCGGATAGAGGTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20763</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>17328</contig_pos>
        <strand>+</strand>
        <context>CAAGAAGAAT[C/T]AAAGGGACCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGAAATTGAAACAGAACAAAAAATTTATGGAACAGCTGACAAGAAGAAT</left_flank>
        <right_flank>AAAGGGACCACTGCCACATTTTTTTTCGTTGTAATGGTTGCGAGAACTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAATTTTGGGGTTTTTTCAAAAAAAAAATTTGAGAATGGGGTACCTGGACGCTCGATATTATCATTATTAGAATCGATTGGCATTCTTGGCACGTTCTCGAAACAGGAGCACCTTCAGCGATGACCAAATTGCTAATACCTTCGGTCGCTGGTTCGACTGGAGGATCTCAAATTTTGGGGGTTTTTCAAAAAAAAAATTGAGAATGGGGTACCTGGACGCTCGATATTATCATCATTAGAACTGATTGGCATTCTTGGCACGTTTCTCGAAACACTCTAAAAATTTTCTGTGAAAAAATTTCAAAAATCAAAAAATGTAATAATTTTTTGGCAAAAATTACATTTTTGGGTGGTCGGATAGAGGTAAAAAAAAGTGTCAGAACATAGATAAGAAACGGGTTTTCAAGGTCGATTTCATGCTTTTTTCGGTTAAACCGAAAAAAAAGATCAGAAATTGAAACAGAACAAAAAATTTATGGAACAGCTGACAAGAAGAATCAAAGGGACCACTGCCACATTTTTTTTCGTTGTAATGGTTGCGAGAACTGAGCAAAAAAGAGCAAGAGAGAGAGAGAAAAGTTGAGAAATAAAATTTTTTTGTGAAATTTTTTTTCCGAAAATTCCTAAATTTCCAATTTCAGATCTAGAATGTTCCGGCATAAACTTAATATGCTCTAAAAAAGAAGCAAACAATTTTTTCACCGAGAGGAATCGCACCCGGGTCGTCAGGTTGGTAGTGAAAATTTTCGAAAATACCACTGAGCCATTTGTGCATTTTTTTTGAAAATTTGCTCAAAACCGCTTTAAATATAAAGCGAAAAATGACTATTTGGAGAAATGGACAACTAATGATTTGATAGGAAATTCGGTACCAAACAAATTTTATATTTGCCTTACAGTTTTATGTTGATAAGAAAAAATGAGCGAGAGAGAGAAAAAACGTCAATTCCATCTACAGAACTGATAATACACAAAATTTAAAGGTGGTGTACGGTGAAA</canonical>
            <polymorphic>CAAATTTTGGGGTTTTTTCAAAAAAAAAATTTGAGAATGGGGTACCTGGACGCTCGATATTATCATTATTAGAATCGATTGGCATTCTTGGCACGTTCTCGAAACAGGAGCACCTTCAGCGATGACCAAATTGCTAATACCTTCGGTCGCTGGTTCGACTGGAGGATCTCAAATTTTGGGGGTTTTTCAAAAAAAAAATTGAGAATGGGGTACCTGGACGCTCGATATTATCATCATTAGAACTGATTGGCATTCTTGGCACGTTTCTCGAAACACTCTAAAAATTTTCTGTGAAAAAATTTCAAAAATCAAAAAATGTAATAATTTTTTGGCAAAAATTACATTTTTGGGTGGTCGGATAGAGGTAAAAAAAAGTGTCAGAACATAGATAAGAAACGGGTTTTCAAGGTCGATTTCATGCTTTTTTCGGTTAAACCGAAAAAAAAGATCAGAAATTGAAACAGAACAAAAAATTTATGGAACAGCTGACAAGAAGAATYAAAGGGACCACTGCCACATTTTTTTTCGTTGTAATGGTTGCGAGAACTGAGCAAAAAAGAGCAAGAGAGAGAGAGAAAAGTTGAGAAATAAAATTTTTTTGTGAAATTTTTTTTCCGAAAATTCCTAAATTTCCAATTTCAGATCTAGAATGTTCCGGCATAAACTTAATATGCTCTAAAAAAGAAGCAAACAATTTTTTCACCGAGAGGAATCGCACCCGGGTCGTCAGGTTGGTAGTGAAAATTTTCGAAAATACCACTGAGCCATTTGTGCATTTTTTTTGAAAATTTGCTCAAAACCGCTTTAAATATAAAGCGAAAAATGACTATTTGGAGAAATGGACAACTAATGATTTGATAGGAAATTCGGTACCAAACAAATTTTATATTTGCCTTACAGTTTTATGTTGATAAGAAAAAATGAGCGAGAGAGAGAAAAAACGTCAATTCCATCTACAGAACTGATAATACACAAAATTTAAAGGTGGTGTACGGTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>424 290 214 72</canonical_bands>
                <polymorphic_bands>638 290 72</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>424 290 214 72</canonical_bands>
                <polymorphic_bands>638 290 72</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTACATTTTTGGGTGGT</pcr_primer_p1>
		<pcr_primer_p2>TCAACTTTTCTCTCTCTCTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATTACATTTTTGGGTGGTCGGATAGAGGTAAAAAAAAGTGTCAGAACATAGATAAGAAACGGGTTTTCAAGGTCGATTTCATGCTTTTTTCGGTTAAACCGAAAAAAAAGATCAGAAATTGAAACAGAACAAAAAATTTATGGAACAGCTGACAAGAAGAATCAAAGGGACCACTGCCACATTTTTTTTCGTTGTAATGGTTGCGAGAACTGAGCAAAAAAGAGCAAGAGAGAGAGAGAAAAGTTGA</canonical_amplicon>
		<polymorphic_amplicon>AAAATTACATTTTTGGGTGGTCGGATAGAGGTAAAAAAAAGTGTCAGAACATAGATAAGAAACGGGTTTTCAAGGTCGATTTCATGCTTTTTTCGGTTAAACCGAAAAAAAAGATCAGAAATTGAAACAGAACAAAAAATTTATGGAACAGCTGACAAGAAGAATYAAAGGGACCACTGCCACATTTTTTTTCGTTGTAATGGTTGCGAGAACTGAGCAAAAAAGAGCAAGAGAGAGAGAGAAAAGTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20764</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>17380</contig_pos>
        <strand></strand>
        <context>GAGAACTGAG[C/T]AAAAAAGAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGGGACCACTGCCACATTTTTTTTCGTTGTAATGGTTGCGAGAACTGAG</left_flank>
        <right_flank>AAAAAAGAGCAAGAGAGAGAGAGAAAAGTTGAGAAATAAAATTTTTTTGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGATATTATCATTATTAGAATCGATTGGCATTCTTGGCACGTTCTCGAAACAGGAGCACCTTCAGCGATGACCAAATTGCTAATACCTTCGGTCGCTGGTTCGACTGGAGGATCTCAAATTTTGGGGGTTTTTCAAAAAAAAAATTGAGAATGGGGTACCTGGACGCTCGATATTATCATCATTAGAACTGATTGGCATTCTTGGCACGTTTCTCGAAACACTCTAAAAATTTTCTGTGAAAAAATTTCAAAAATCAAAAAATGTAATAATTTTTTGGCAAAAATTACATTTTTGGGTGGTCGGATAGAGGTAAAAAAAAGTGTCAGAACATAGATAAGAAACGGGTTTTCAAGGTCGATTTCATGCTTTTTTCGGTTAAACCGAAAAAAAAGATCAGAAATTGAAACAGAACAAAAAATTTATGGAACAGCTGACAAGAAGAATCAAAGGGACCACTGCCACATTTTTTTTCGTTGTAATGGTTGCGAGAACTGAGCAAAAAAGAGCAAGAGAGAGAGAGAAAAGTTGAGAAATAAAATTTTTTTGTGAAATTTTTTTTCCGAAAATTCCTAAATTTCCAATTTCAGATCTAGAATGTTCCGGCATAAACTTAATATGCTCTAAAAAAGAAGCAAACAATTTTTTCACCGAGAGGAATCGCACCCGGGTCGTCAGGTTGGTAGTGAAAATTTTCGAAAATACCACTGAGCCATTTGTGCATTTTTTTTGAAAATTTGCTCAAAACCGCTTTAAATATAAAGCGAAAAATGACTATTTGGAGAAATGGACAACTAATGATTTGATAGGAAATTCGGTACCAAACAAATTTTATATTTGCCTTACAGTTTTATGTTGATAAGAAAAAATGAGCGAGAGAGAGAAAAAACGTCAATTCCATCTACAGAACTGATAATACACAAAATTTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATA</canonical>
            <polymorphic>CTCGATATTATCATTATTAGAATCGATTGGCATTCTTGGCACGTTCTCGAAACAGGAGCACCTTCAGCGATGACCAAATTGCTAATACCTTCGGTCGCTGGTTCGACTGGAGGATCTCAAATTTTGGGGGTTTTTCAAAAAAAAAATTGAGAATGGGGTACCTGGACGCTCGATATTATCATCATTAGAACTGATTGGCATTCTTGGCACGTTTCTCGAAACACTCTAAAAATTTTCTGTGAAAAAATTTCAAAAATCAAAAAATGTAATAATTTTTTGGCAAAAATTACATTTTTGGGTGGTCGGATAGAGGTAAAAAAAAGTGTCAGAACATAGATAAGAAACGGGTTTTCAAGGTCGATTTCATGCTTTTTTCGGTTAAACCGAAAAAAAAGATCAGAAATTGAAACAGAACAAAAAATTTATGGAACAGCTGACAAGAAGAATCAAAGGGACCACTGCCACATTTTTTTTCGTTGTAATGGTTGCGAGAACTGAGYAAAAAAGAGCAAGAGAGAGAGAGAAAAGTTGAGAAATAAAATTTTTTTGTGAAATTTTTTTTCCGAAAATTCCTAAATTTCCAATTTCAGATCTAGAATGTTCCGGCATAAACTTAATATGCTCTAAAAAAGAAGCAAACAATTTTTTCACCGAGAGGAATCGCACCCGGGTCGTCAGGTTGGTAGTGAAAATTTTCGAAAATACCACTGAGCCATTTGTGCATTTTTTTTGAAAATTTGCTCAAAACCGCTTTAAATATAAAGCGAAAAATGACTATTTGGAGAAATGGACAACTAATGATTTGATAGGAAATTCGGTACCAAACAAATTTTATATTTGCCTTACAGTTTTATGTTGATAAGAAAAAATGAGCGAGAGAGAGAAAAAACGTCAATTCCATCTACAGAACTGATAATACACAAAATTTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAACAGCTGACAAGAAGAA</pcr_primer_p1>
		<pcr_primer_p2>CATTTCTCCAAATAGTCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>363</pcr_amplicon_size>
		<canonical_amplicon>GGAACAGCTGACAAGAAGAATCAAAGGGACCACTGCCACATTTTTTTTCGTTGTAATGGTTGCGAGAACTGAGCAAAAAAGAGCAAGAGAGAGAGAGAAAAGTTGAGAAATAAAATTTTTTTGTGAAATTTTTTTTCCGAAAATTCCTAAATTTCCAATTTCAGATCTAGAATGTTCCGGCATAAACTTAATATGCTCTAAAAAAGAAGCAAACAATTTTTTCACCGAGAGGAATCGCACCCGGGTCGTCAGGTTGGTAGTGAAAATTTTCGAAAATACCACTGAGCCATTTGTGCATTTTTTTTGAAAATTTGCTCAAAACCGCTTTAAATATAAAGCGAAAAATGACTATTTGGAGAAATG</canonical_amplicon>
		<polymorphic_amplicon>GGAACAGCTGACAAGAAGAATCAAAGGGACCACTGCCACATTTTTTTTCGTTGTAATGGTTGCGAGAACTGAGYAAAAAAGAGCAAGAGAGAGAGAGAAAAGTTGAGAAATAAAATTTTTTTGTGAAATTTTTTTTCCGAAAATTCCTAAATTTCCAATTTCAGATCTAGAATGTTCCGGCATAAACTTAATATGCTCTAAAAAAGAAGCAAACAATTTTTTCACCGAGAGGAATCGCACCCGGGTCGTCAGGTTGGTAGTGAAAATTTTCGAAAATACCACTGAGCCATTTGTGCATTTTTTTTGAAAATTTGCTCAAAACCGCTTTAAATATAAAGCGAAAAATGACTATTTGGAGAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20765</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>19632</contig_pos>
        <strand>+</strand>
        <context>TAGTTTTCAT[C/T]CTCTCTTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAAAATAATTCTGAATGATGAAGAAGAACACGCAGCTCCTAGTTTTCAT</left_flank>
        <right_flank>CTCTCTTTCTGTTGACCCATTTATCCCCAACAGAGATGAGCGGAATTCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTCATCAAACTAGCGTATTGTCTAGACTCCGTTCGATTCCCAGTGCTTCGTGGAAATCGATGAAATCTGGTACAAAGAAATGTGGACTTTCGCCAAGTCTGTCAAATTGAATGTGAAAAACACACATTTCGTCCCAGTAATGACTGCCATGAACGCGAACCTCTACAAAATCCCATTGATTATATAGTTCAGGCAAGAGTCTACATTTGTCATTCGTTTTTTTTTTCATTTTTAGTTATTTTTCAGGGACCTCCAAGCACCAACTGCGACTATCACGTGCTATTGGAGCCATAACTGTTTGCCCAGCACGACGAACTTCATTTGAAAAGCGGTGATGGTGGTGACAATGAATCACAGGTTGAACTTTAGATTTTTGCGAGATGGAAATTCGATATTTCCAAAAGCCCCCATATTTCAAAATCATTTTTTCAGCGTTCTTCTTCTTCTTCAAAATAATTCTGAATGATGAAGAAGAACACGCAGCTCCTAGTTTTCATTCTCTCTTTCTGTTGACCCATTTATCCCCAACAGAGATGAGCGGAATTCCTTATTCCTGATTATTTCTCATTCTACCGGATAATTCGAAAATTTTCTATTTCAACACATACAATTAGAGTAATGTTTTCTAAATCTGATTGTTTTTCCGAATTATTTGATTTCCTGATTCCTTATTCCTTCTTCCGGATTTTCCAAATTTGCATTCCACTCATCCCCAATATCATCGTCTCCTGTATCTCCTTACTTTTTTGACAGCTTGGTGAATTTCGTGTTATTAAACAAAGTTGCACGGACACTCCGTTGTCCGTACAGAACAATTTCCCTGTCCGTGTAACTCGCTGAAATAAATGATTCTATCTTTTTTGAAACATTTTCTTTTCAGGTGATTGTTTTAAAGGATCTCAACTAACTCAAAAATCAACTGAACTCGATAAACTTTATTCATTAAATTTCCCACATTTAGAGCTTCAAAATGAGTATAAACACGACTAGGCTCCGCC</canonical>
            <polymorphic>TACTCATCAAACTAGCGTATTGTCTAGACTCCGTTCGATTCCCAGTGCTTCGTGGAAATCGATGAAATCTGGTACAAAGAAATGTGGACTTTCGCCAAGTCTGTCAAATTGAATGTGAAAAACACACATTTCGTCCCAGTAATGACTGCCATGAACGCGAACCTCTACAAAATCCCATTGATTATATAGTTCAGGCAAGAGTCTACATTTGTCATTCGTTTTTTTTTTCATTTTTAGTTATTTTTCAGGGACCTCCAAGCACCAACTGCGACTATCACGTGCTATTGGAGCCATAACTGTTTGCCCAGCACGACGAACTTCATTTGAAAAGCGGTGATGGTGGTGACAATGAATCACAGGTTGAACTTTAGATTTTTGCGAGATGGAAATTCGATATTTCCAAAAGCCCCCATATTTCAAAATCATTTTTTCAGCGTTCTTCTTCTTCTTCAAAATAATTCTGAATGATGAAGAAGAACACGCAGCTCCTAGTTTTCATYCTCTCTTTCTGTTGACCCATTTATCCCCAACAGAGATGAGCGGAATTCCTTATTCCTGATTATTTCTCATTCTACCGGATAATTCGAAAATTTTCTATTTCAACACATACAATTAGAGTAATGTTTTCTAAATCTGATTGTTTTTCCGAATTATTTGATTTCCTGATTCCTTATTCCTTCTTCCGGATTTTCCAAATTTGCATTCCACTCATCCCCAATATCATCGTCTCCTGTATCTCCTTACTTTTTTGACAGCTTGGTGAATTTCGTGTTATTAAACAAAGTTGCACGGACACTCCGTTGTCCGTACAGAACAATTTCCCTGTCCGTGTAACTCGCTGAAATAAATGATTCTATCTTTTTTGAAACATTTTCTTTTCAGGTGATTGTTTTAAAGGATCTCAACTAACTCAAAAATCAACTGAACTCGATAAACTTTATTCATTAAATTTCCCACATTTAGAGCTTCAAAATGAGTATAAACACGACTAGGCTCCGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAATCACAGGTTGAACTTTA</pcr_primer_p1>
		<pcr_primer_p2>AATTATCCGGTAGAATGAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>AATGAATCACAGGTTGAACTTTAGATTTTTGCGAGATGGAAATTCGATATTTCCAAAAGCCCCCATATTTCAAAATCATTTTTTCAGCGTTCTTCTTCTTCTTCAAAATAATTCTGAATGATGAAGAAGAACACGCAGCTCCTAGTTTTCATTCTCTCTTTCTGTTGACCCATTTATCCCCAACAGAGATGAGCGGAATTCCTTATTCCTGATTATTTCTCATTCTACCGGATAATT</canonical_amplicon>
		<polymorphic_amplicon>AATGAATCACAGGTTGAACTTTAGATTTTTGCGAGATGGAAATTCGATATTTCCAAAAGCCCCCATATTTCAAAATCATTTTTTCAGCGTTCTTCTTCTTCTTCAAAATAATTCTGAATGATGAAGAAGAACACGCAGCTCCTAGTTTTCATYCTCTCTTTCTGTTGACCCATTTATCCCCAACAGAGATGAGCGGAATTCCTTATTCCTGATTATTTCTCATTCTACCGGATAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20766</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>19620</contig_pos>
        <strand>+</strand>
        <context>ACACGCAGCT[C/T]CTAGTTTTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTCTTCTTCTTCAAAATAATTCTGAATGATGAAGAAGAACACGCAGCT</left_flank>
        <right_flank>CTAGTTTTCATTCTCTCTTTCTGTTGACCCATTTATCCCCAACAGAGATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCTCAGGCAATACTCATCAAACTAGCGTATTGTCTAGACTCCGTTCGATTCCCAGTGCTTCGTGGAAATCGATGAAATCTGGTACAAAGAAATGTGGACTTTCGCCAAGTCTGTCAAATTGAATGTGAAAAACACACATTTCGTCCCAGTAATGACTGCCATGAACGCGAACCTCTACAAAATCCCATTGATTATATAGTTCAGGCAAGAGTCTACATTTGTCATTCGTTTTTTTTTTCATTTTTAGTTATTTTTCAGGGACCTCCAAGCACCAACTGCGACTATCACGTGCTATTGGAGCCATAACTGTTTGCCCAGCACGACGAACTTCATTTGAAAAGCGGTGATGGTGGTGACAATGAATCACAGGTTGAACTTTAGATTTTTGCGAGATGGAAATTCGATATTTCCAAAAGCCCCCATATTTCAAAATCATTTTTTCAGCGTTCTTCTTCTTCTTCAAAATAATTCTGAATGATGAAGAAGAACACGCAGCTCCTAGTTTTCATTCTCTCTTTCTGTTGACCCATTTATCCCCAACAGAGATGAGCGGAATTCCTTATTCCTGATTATTTCTCATTCTACCGGATAATTCGAAAATTTTCTATTTCAACACATACAATTAGAGTAATGTTTTCTAAATCTGATTGTTTTTCCGAATTATTTGATTTCCTGATTCCTTATTCCTTCTTCCGGATTTTCCAAATTTGCATTCCACTCATCCCCAATATCATCGTCTCCTGTATCTCCTTACTTTTTTGACAGCTTGGTGAATTTCGTGTTATTAAACAAAGTTGCACGGACACTCCGTTGTCCGTACAGAACAATTTCCCTGTCCGTGTAACTCGCTGAAATAAATGATTCTATCTTTTTTGAAACATTTTCTTTTCAGGTGATTGTTTTAAAGGATCTCAACTAACTCAAAAATCAACTGAACTCGATAAACTTTATTCATTAAATTTCCCACATTTAGAGCTTCAAAATGAGTATAAACACGA</canonical>
            <polymorphic>AATCTCAGGCAATACTCATCAAACTAGCGTATTGTCTAGACTCCGTTCGATTCCCAGTGCTTCGTGGAAATCGATGAAATCTGGTACAAAGAAATGTGGACTTTCGCCAAGTCTGTCAAATTGAATGTGAAAAACACACATTTCGTCCCAGTAATGACTGCCATGAACGCGAACCTCTACAAAATCCCATTGATTATATAGTTCAGGCAAGAGTCTACATTTGTCATTCGTTTTTTTTTTCATTTTTAGTTATTTTTCAGGGACCTCCAAGCACCAACTGCGACTATCACGTGCTATTGGAGCCATAACTGTTTGCCCAGCACGACGAACTTCATTTGAAAAGCGGTGATGGTGGTGACAATGAATCACAGGTTGAACTTTAGATTTTTGCGAGATGGAAATTCGATATTTCCAAAAGCCCCCATATTTCAAAATCATTTTTTCAGCGTTCTTCTTCTTCTTCAAAATAATTCTGAATGATGAAGAAGAACACGCAGCTYCTAGTTTTCATTCTCTCTTTCTGTTGACCCATTTATCCCCAACAGAGATGAGCGGAATTCCTTATTCCTGATTATTTCTCATTCTACCGGATAATTCGAAAATTTTCTATTTCAACACATACAATTAGAGTAATGTTTTCTAAATCTGATTGTTTTTCCGAATTATTTGATTTCCTGATTCCTTATTCCTTCTTCCGGATTTTCCAAATTTGCATTCCACTCATCCCCAATATCATCGTCTCCTGTATCTCCTTACTTTTTTGACAGCTTGGTGAATTTCGTGTTATTAAACAAAGTTGCACGGACACTCCGTTGTCCGTACAGAACAATTTCCCTGTCCGTGTAACTCGCTGAAATAAATGATTCTATCTTTTTTGAAACATTTTCTTTTCAGGTGATTGTTTTAAAGGATCTCAACTAACTCAAAAATCAACTGAACTCGATAAACTTTATTCATTAAATTTCCCACATTTAGAGCTTCAAAATGAGTATAAACACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAATCACAGGTTGAACTTTA</pcr_primer_p1>
		<pcr_primer_p2>AATTATCCGGTAGAATGAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>AATGAATCACAGGTTGAACTTTAGATTTTTGCGAGATGGAAATTCGATATTTCCAAAAGCCCCCATATTTCAAAATCATTTTTTCAGCGTTCTTCTTCTTCTTCAAAATAATTCTGAATGATGAAGAAGAACACGCAGCTCCTAGTTTTCATTCTCTCTTTCTGTTGACCCATTTATCCCCAACAGAGATGAGCGGAATTCCTTATTCCTGATTATTTCTCATTCTACCGGATAATT</canonical_amplicon>
		<polymorphic_amplicon>AATGAATCACAGGTTGAACTTTAGATTTTTGCGAGATGGAAATTCGATATTTCCAAAAGCCCCCATATTTCAAAATCATTTTTTCAGCGTTCTTCTTCTTCTTCAAAATAATTCTGAATGATGAAGAAGAACACGCAGCTYCTAGTTTTCATTCTCTCTTTCTGTTGACCCATTTATCCCCAACAGAGATGAGCGGAATTCCTTATTCCTGATTATTTCTCATTCTACCGGATAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20767</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>19568</contig_pos>
        <strand>+</strand>
        <context>TTTTTTCAGC[C/G]TTCTTCTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAAATTCGATATTTCCAAAAGCCCCCATATTTCAAAATCATTTTTTCAGC</left_flank>
        <right_flank>TTCTTCTTCTTCTTCAAAATAATTCTGAATGATGAAGAAGAACACGCAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTGATTCCTCCTGTTACTCTTTCTTCAGCTGCTTCACAAGCAGTACAATCAATCTCAGGCAATACTCATCAAACTAGCGTATTGTCTAGACTCCGTTCGATTCCCAGTGCTTCGTGGAAATCGATGAAATCTGGTACAAAGAAATGTGGACTTTCGCCAAGTCTGTCAAATTGAATGTGAAAAACACACATTTCGTCCCAGTAATGACTGCCATGAACGCGAACCTCTACAAAATCCCATTGATTATATAGTTCAGGCAAGAGTCTACATTTGTCATTCGTTTTTTTTTTCATTTTTAGTTATTTTTCAGGGACCTCCAAGCACCAACTGCGACTATCACGTGCTATTGGAGCCATAACTGTTTGCCCAGCACGACGAACTTCATTTGAAAAGCGGTGATGGTGGTGACAATGAATCACAGGTTGAACTTTAGATTTTTGCGAGATGGAAATTCGATATTTCCAAAAGCCCCCATATTTCAAAATCATTTTTTCAGCGTTCTTCTTCTTCTTCAAAATAATTCTGAATGATGAAGAAGAACACGCAGCTCCTAGTTTTCATTCTCTCTTTCTGTTGACCCATTTATCCCCAACAGAGATGAGCGGAATTCCTTATTCCTGATTATTTCTCATTCTACCGGATAATTCGAAAATTTTCTATTTCAACACATACAATTAGAGTAATGTTTTCTAAATCTGATTGTTTTTCCGAATTATTTGATTTCCTGATTCCTTATTCCTTCTTCCGGATTTTCCAAATTTGCATTCCACTCATCCCCAATATCATCGTCTCCTGTATCTCCTTACTTTTTTGACAGCTTGGTGAATTTCGTGTTATTAAACAAAGTTGCACGGACACTCCGTTGTCCGTACAGAACAATTTCCCTGTCCGTGTAACTCGCTGAAATAAATGATTCTATCTTTTTTGAAACATTTTCTTTTCAGGTGATTGTTTTAAAGGATCTCAACTAACTCAAAAATCAACTGAACTCGATAAAC</canonical>
            <polymorphic>CATTGATTCCTCCTGTTACTCTTTCTTCAGCTGCTTCACAAGCAGTACAATCAATCTCAGGCAATACTCATCAAACTAGCGTATTGTCTAGACTCCGTTCGATTCCCAGTGCTTCGTGGAAATCGATGAAATCTGGTACAAAGAAATGTGGACTTTCGCCAAGTCTGTCAAATTGAATGTGAAAAACACACATTTCGTCCCAGTAATGACTGCCATGAACGCGAACCTCTACAAAATCCCATTGATTATATAGTTCAGGCAAGAGTCTACATTTGTCATTCGTTTTTTTTTTCATTTTTAGTTATTTTTCAGGGACCTCCAAGCACCAACTGCGACTATCACGTGCTATTGGAGCCATAACTGTTTGCCCAGCACGACGAACTTCATTTGAAAAGCGGTGATGGTGGTGACAATGAATCACAGGTTGAACTTTAGATTTTTGCGAGATGGAAATTCGATATTTCCAAAAGCCCCCATATTTCAAAATCATTTTTTCAGCSTTCTTCTTCTTCTTCAAAATAATTCTGAATGATGAAGAAGAACACGCAGCTCCTAGTTTTCATTCTCTCTTTCTGTTGACCCATTTATCCCCAACAGAGATGAGCGGAATTCCTTATTCCTGATTATTTCTCATTCTACCGGATAATTCGAAAATTTTCTATTTCAACACATACAATTAGAGTAATGTTTTCTAAATCTGATTGTTTTTCCGAATTATTTGATTTCCTGATTCCTTATTCCTTCTTCCGGATTTTCCAAATTTGCATTCCACTCATCCCCAATATCATCGTCTCCTGTATCTCCTTACTTTTTTGACAGCTTGGTGAATTTCGTGTTATTAAACAAAGTTGCACGGACACTCCGTTGTCCGTACAGAACAATTTCCCTGTCCGTGTAACTCGCTGAAATAAATGATTCTATCTTTTTTGAAACATTTTCTTTTCAGGTGATTGTTTTAAAGGATCTCAACTAACTCAAAAATCAACTGAACTCGATAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAATCACAGGTTGAACTTTA</pcr_primer_p1>
		<pcr_primer_p2>AATTATCCGGTAGAATGAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>AATGAATCACAGGTTGAACTTTAGATTTTTGCGAGATGGAAATTCGATATTTCCAAAAGCCCCCATATTTCAAAATCATTTTTTCAGCGTTCTTCTTCTTCTTCAAAATAATTCTGAATGATGAAGAAGAACACGCAGCTCCTAGTTTTCATTCTCTCTTTCTGTTGACCCATTTATCCCCAACAGAGATGAGCGGAATTCCTTATTCCTGATTATTTCTCATTCTACCGGATAATT</canonical_amplicon>
		<polymorphic_amplicon>AATGAATCACAGGTTGAACTTTAGATTTTTGCGAGATGGAAATTCGATATTTCCAAAAGCCCCCATATTTCAAAATCATTTTTTCAGCSTTCTTCTTCTTCTTCAAAATAATTCTGAATGATGAAGAAGAACACGCAGCTCCTAGTTTTCATTCTCTCTTTCTGTTGACCCATTTATCCCCAACAGAGATGAGCGGAATTCCTTATTCCTGATTATTTCTCATTCTACCGGATAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20768</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>19552</contig_pos>
        <strand>+</strand>
        <context>CCATATTTCA[A/G]AATCATTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGATTTTTGCGAGATGGAAATTCGATATTTCCAAAAGCCCCCATATTTCA</left_flank>
        <right_flank>AATCATTTTTTCAGCGTTCTTCTTCTTCTTCAAAATAATTCTGAATGATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATTTCATCCTCAGCCATTGATTCCTCCTGTTACTCTTTCTTCAGCTGCTTCACAAGCAGTACAATCAATCTCAGGCAATACTCATCAAACTAGCGTATTGTCTAGACTCCGTTCGATTCCCAGTGCTTCGTGGAAATCGATGAAATCTGGTACAAAGAAATGTGGACTTTCGCCAAGTCTGTCAAATTGAATGTGAAAAACACACATTTCGTCCCAGTAATGACTGCCATGAACGCGAACCTCTACAAAATCCCATTGATTATATAGTTCAGGCAAGAGTCTACATTTGTCATTCGTTTTTTTTTTCATTTTTAGTTATTTTTCAGGGACCTCCAAGCACCAACTGCGACTATCACGTGCTATTGGAGCCATAACTGTTTGCCCAGCACGACGAACTTCATTTGAAAAGCGGTGATGGTGGTGACAATGAATCACAGGTTGAACTTTAGATTTTTGCGAGATGGAAATTCGATATTTCCAAAAGCCCCCATATTTCAAAATCATTTTTTCAGCGTTCTTCTTCTTCTTCAAAATAATTCTGAATGATGAAGAAGAACACGCAGCTCCTAGTTTTCATTCTCTCTTTCTGTTGACCCATTTATCCCCAACAGAGATGAGCGGAATTCCTTATTCCTGATTATTTCTCATTCTACCGGATAATTCGAAAATTTTCTATTTCAACACATACAATTAGAGTAATGTTTTCTAAATCTGATTGTTTTTCCGAATTATTTGATTTCCTGATTCCTTATTCCTTCTTCCGGATTTTCCAAATTTGCATTCCACTCATCCCCAATATCATCGTCTCCTGTATCTCCTTACTTTTTTGACAGCTTGGTGAATTTCGTGTTATTAAACAAAGTTGCACGGACACTCCGTTGTCCGTACAGAACAATTTCCCTGTCCGTGTAACTCGCTGAAATAAATGATTCTATCTTTTTTGAAACATTTTCTTTTCAGGTGATTGTTTTAAAGGATCTCAACTAACTCAAAAATCA</canonical>
            <polymorphic>TCATTTCATCCTCAGCCATTGATTCCTCCTGTTACTCTTTCTTCAGCTGCTTCACAAGCAGTACAATCAATCTCAGGCAATACTCATCAAACTAGCGTATTGTCTAGACTCCGTTCGATTCCCAGTGCTTCGTGGAAATCGATGAAATCTGGTACAAAGAAATGTGGACTTTCGCCAAGTCTGTCAAATTGAATGTGAAAAACACACATTTCGTCCCAGTAATGACTGCCATGAACGCGAACCTCTACAAAATCCCATTGATTATATAGTTCAGGCAAGAGTCTACATTTGTCATTCGTTTTTTTTTTCATTTTTAGTTATTTTTCAGGGACCTCCAAGCACCAACTGCGACTATCACGTGCTATTGGAGCCATAACTGTTTGCCCAGCACGACGAACTTCATTTGAAAAGCGGTGATGGTGGTGACAATGAATCACAGGTTGAACTTTAGATTTTTGCGAGATGGAAATTCGATATTTCCAAAAGCCCCCATATTTCARAATCATTTTTTCAGCGTTCTTCTTCTTCTTCAAAATAATTCTGAATGATGAAGAAGAACACGCAGCTCCTAGTTTTCATTCTCTCTTTCTGTTGACCCATTTATCCCCAACAGAGATGAGCGGAATTCCTTATTCCTGATTATTTCTCATTCTACCGGATAATTCGAAAATTTTCTATTTCAACACATACAATTAGAGTAATGTTTTCTAAATCTGATTGTTTTTCCGAATTATTTGATTTCCTGATTCCTTATTCCTTCTTCCGGATTTTCCAAATTTGCATTCCACTCATCCCCAATATCATCGTCTCCTGTATCTCCTTACTTTTTTGACAGCTTGGTGAATTTCGTGTTATTAAACAAAGTTGCACGGACACTCCGTTGTCCGTACAGAACAATTTCCCTGTCCGTGTAACTCGCTGAAATAAATGATTCTATCTTTTTTGAAACATTTTCTTTTCAGGTGATTGTTTTAAAGGATCTCAACTAACTCAAAAATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAATCACAGGTTGAACTTTA</pcr_primer_p1>
		<pcr_primer_p2>AATTATCCGGTAGAATGAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>AATGAATCACAGGTTGAACTTTAGATTTTTGCGAGATGGAAATTCGATATTTCCAAAAGCCCCCATATTTCAAAATCATTTTTTCAGCGTTCTTCTTCTTCTTCAAAATAATTCTGAATGATGAAGAAGAACACGCAGCTCCTAGTTTTCATTCTCTCTTTCTGTTGACCCATTTATCCCCAACAGAGATGAGCGGAATTCCTTATTCCTGATTATTTCTCATTCTACCGGATAATT</canonical_amplicon>
		<polymorphic_amplicon>AATGAATCACAGGTTGAACTTTAGATTTTTGCGAGATGGAAATTCGATATTTCCAAAAGCCCCCATATTTCARAATCATTTTTTCAGCGTTCTTCTTCTTCTTCAAAATAATTCTGAATGATGAAGAAGAACACGCAGCTCCTAGTTTTCATTCTCTCTTTCTGTTGACCCATTTATCCCCAACAGAGATGAGCGGAATTCCTTATTCCTGATTATTTCTCATTCTACCGGATAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20769</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>26357</contig_pos>
        <strand></strand>
        <context>AAAGTCACAT[C/A]GAATTGTGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTGGTTTTCTGGGAAAAAAAATTAGCTTTCAAATTCTTTAAAAGTCACAT</left_flank>
        <right_flank>GAATTGTGATAAGAAGAAGAAGAAAAAGTTTGAGACCGCGAAATATGGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTCATACAAATGATTCAGAATCAGTGGAGGAAGTTTGAATTCCTGGTCATTCGAAGTTCCAGAAGATTCTTTTTTTTTTTGAAAATAAAACTTGCTGAGGTATTTGTCATAAATTGATAGAGCTTCTGGGTCCAAATTCTTTCCATTTGCAAATCGGTACATTATTTCTAGTATCAAACTGTCATTTCCATTGAATGCTTCTGATTCGCCTTCTCGATTCTTGAAAAACCAACGGACATCCGAGCATTTTAAGCTTTCGAGCTGAAAATGAATGCTTTGAAAAATTAATGATGTCTCAAAAAGTATTAGATTATTTACATACCAGTTCTTTTGAATGCTCAGATGCATTGCTCATCGTTAGTTCTAGTAAAAATTGAAACAAAATTAATTAACTCACCTCCAAATTGTTAATACCTTCAGTATTGGAACCGGCTGGCATTTTTAATTGGTTTTCTGGGAAAAAAAATTAGCTTTCAAATTCTTTAAAAGTCACATCGAATTGTGATAAGAAGAAGAAGAAAAAGTTTGAGACCGCGAAATATGGAATACATCAGTTTCGAGCGGGCAGGCCAACGAGAGACGCATGCGGCGAGAGCATGGGTCTTCAGTAAATTAAGTTTTACCTCGAAATTCTGAAAATTGANAAAGTTATGATCAACACAAGTTTTTTTGGAATATTCCCAAAAAAGTGTTATGTAAGCAAGCTTCGTTATTATTTATTTTTCAAACATCTATTAATTATTTCTGAGTTTGTCACATTTCGAGCTTCAAAATGAGTATAATCATGACCTACTTTCCTCGATTTTCAAATTTCGGACACCCTATGCGCCTTTAAAGGAGGCCAGACACCAAAAAAAAAGAAGTTTTCCTGATATTTTGCATGGAGAACCCCCATGNNNNNNNNNNAGTTCGATTTTGTCCTTGTTCTGAATCGCTCTATACTTGTTCGAGAACGACACTGTTCTGATTTGAATCAAATGCACGAAAACGATCGGC</canonical>
            <polymorphic>AAATTTCATACAAATGATTCAGAATCAGTGGAGGAAGTTTGAATTCCTGGTCATTCGAAGTTCCAGAAGATTCTTTTTTTTTTTGAAAATAAAACTTGCTGAGGTATTTGTCATAAATTGATAGAGCTTCTGGGTCCAAATTCTTTCCATTTGCAAATCGGTACATTATTTCTAGTATCAAACTGTCATTTCCATTGAATGCTTCTGATTCGCCTTCTCGATTCTTGAAAAACCAACGGACATCCGAGCATTTTAAGCTTTCGAGCTGAAAATGAATGCTTTGAAAAATTAATGATGTCTCAAAAAGTATTAGATTATTTACATACCAGTTCTTTTGAATGCTCAGATGCATTGCTCATCGTTAGTTCTAGTAAAAATTGAAACAAAATTAATTAACTCACCTCCAAATTGTTAATACCTTCAGTATTGGAACCGGCTGGCATTTTTAATTGGTTTTCTGGGAAAAAAAATTAGCTTTCAAATTCTTTAAAAGTCACATMGAATTGTGATAAGAAGAAGAAGAAAAAGTTTGAGACCGCGAAATATGGAATACATCAGTTTCGAGCGGGCAGGCCAACGAGAGACGCATGCGGCGAGAGCATGGGTCTTCAGTAAATTAAGTTTTACCTCGAAATTCTGAAAATTGANAAAGTTATGATCAACACAAGTTTTTTTGGAATATTCCCAAAAAAGTGTTATGTAAGCAAGCTTCGTTATTATTTATTTTTCAAACATCTATTAATTATTTCTGAGTTTGTCACATTTCGAGCTTCAAAATGAGTATAATCATGACCTACTTTCCTCGATTTTCAAATTTCGGACACCCTATGCGCCTTTAAAGGAGGCCAGACACCAAAAAAAAAGAAGTTTTCCTGATATTTTGCATGGAGAACCCCCATGNNNNNNNNNNAGTTCGATTTTGTCCTTGTTCTGAATCGCTCTATACTTGTTCGAGAACGACACTGTTCTGATTTGAATCAAATGCACGAAAACGATCGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>238 163 136 111 68 62 56 48 43 38 37</canonical_bands>
                <polymorphic_bands>300 163 136 111 68 56 48 43 38 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTACATACCAGTTCTTTTGAATG</pcr_primer_p1>
		<pcr_primer_p2>TCGAAACTGATGTATTCCATATT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTACATACCAGTTCTTTTGAATGCTCAGATGCATTGCTCATCGTTAGTTCTAGTAAAAATTGAAACAAAATTAATTAACTCACCTCCAAATTGTTAATACCTTCAGTATTGGAACCGGCTGGCATTTTTAATTGGTTTTCTGGGAAAAAAAATTAGCTTTCAAATTCTTTAAAAGTCACATCGAATTGTGATAAGAAGAAGAAGAAAAAGTTTGAGACCGCGAAATATGGAATACATCAGTTTCGA</canonical_amplicon>
		<polymorphic_amplicon>TTTACATACCAGTTCTTTTGAATGCTCAGATGCATTGCTCATCGTTAGTTCTAGTAAAAATTGAAACAAAATTAATTAACTCACCTCCAAATTGTTAATACCTTCAGTATTGGAACCGGCTGGCATTTTTAATTGGTTTTCTGGGAAAAAAAATTAGCTTTCAAATTCTTTAAAAGTCACATMGAATTGTGATAAGAAGAAGAAGAAAAAGTTTGAGACCGCGAAATATGGAATACATCAGTTTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20770</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>26446</contig_pos>
        <strand></strand>
        <context>GAGAGACGCA[T/G]GCGGCGAGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CGAAATATGGAATACATCAGTTTCGAGCGGGCAGGCCAACGAGAGACGCA</left_flank>
        <right_flank>GCGGCGAGAGCATGGGTCTTCAGTAAATTAAGTTTTACCTCGAAATTCTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAACTTGCTGAGGTATTTGTCATAAATTGATAGAGCTTCTGGGTCCAAATTCTTTCCATTTGCAAATCGGTACATTATTTCTAGTATCAAACTGTCATTTCCATTGAATGCTTCTGATTCGCCTTCTCGATTCTTGAAAAACCAACGGACATCCGAGCATTTTAAGCTTTCGAGCTGAAAATGAATGCTTTGAAAAATTAATGATGTCTCAAAAAGTATTAGATTATTTACATACCAGTTCTTTTGAATGCTCAGATGCATTGCTCATCGTTAGTTCTAGTAAAAATTGAAACAAAATTAATTAACTCACCTCCAAATTGTTAATACCTTCAGTATTGGAACCGGCTGGCATTTTTAATTGGTTTTCTGGGAAAAAAAATTAGCTTTCAAATTCTTTAAAAGTCACATCGAATTGTGATAAGAAGAAGAAGAAAAAGTTTGAGACCGCGAAATATGGAATACATCAGTTTCGAGCGGGCAGGCCAACGAGAGACGCATGCGGCGAGAGCATGGGTCTTCAGTAAATTAAGTTTTACCTCGAAATTCTGAAAATTGANAAAGTTATGATCAACACAAGTTTTTTTGGAATATTCCCAAAAAAGTGTTATGTAAGCAAGCTTCGTTATTATTTATTTTTCAAACATCTATTAATTATTTCTGAGTTTGTCACATTTCGAGCTTCAAAATGAGTATAATCATGACCTACTTTCCTCGATTTTCAAATTTCGGACACCCTATGCGCCTTTAAAGGAGGCCAGACACCAAAAAAAAAGAAGTTTTCCTGATATTTTGCATGGAGAACCCCCATGNNNNNNNNNNAGTTCGATTTTGTCCTTGTTCTGAATCGCTCTATACTTGTTCGAGAACGACACTGTTCTGATTTGAATCAAATGCACGAAAACGATCGGCTGTCGGTCGGCGGTCGGCGATTTTCGACCGGCCGAAAAGACCCCATTTCTCTGCGTCTCTCGTTGGTCGATTCAAACATTAGCAGACCA</canonical>
            <polymorphic>TAAAACTTGCTGAGGTATTTGTCATAAATTGATAGAGCTTCTGGGTCCAAATTCTTTCCATTTGCAAATCGGTACATTATTTCTAGTATCAAACTGTCATTTCCATTGAATGCTTCTGATTCGCCTTCTCGATTCTTGAAAAACCAACGGACATCCGAGCATTTTAAGCTTTCGAGCTGAAAATGAATGCTTTGAAAAATTAATGATGTCTCAAAAAGTATTAGATTATTTACATACCAGTTCTTTTGAATGCTCAGATGCATTGCTCATCGTTAGTTCTAGTAAAAATTGAAACAAAATTAATTAACTCACCTCCAAATTGTTAATACCTTCAGTATTGGAACCGGCTGGCATTTTTAATTGGTTTTCTGGGAAAAAAAATTAGCTTTCAAATTCTTTAAAAGTCACATCGAATTGTGATAAGAAGAAGAAGAAAAAGTTTGAGACCGCGAAATATGGAATACATCAGTTTCGAGCGGGCAGGCCAACGAGAGACGCAKGCGGCGAGAGCATGGGTCTTCAGTAAATTAAGTTTTACCTCGAAATTCTGAAAATTGANAAAGTTATGATCAACACAAGTTTTTTTGGAATATTCCCAAAAAAGTGTTATGTAAGCAAGCTTCGTTATTATTTATTTTTCAAACATCTATTAATTATTTCTGAGTTTGTCACATTTCGAGCTTCAAAATGAGTATAATCATGACCTACTTTCCTCGATTTTCAAATTTCGGACACCCTATGCGCCTTTAAAGGAGGCCAGACACCAAAAAAAAAGAAGTTTTCCTGATATTTTGCATGGAGAACCCCCATGNNNNNNNNNNAGTTCGATTTTGTCCTTGTTCTGAATCGCTCTATACTTGTTCGAGAACGACACTGTTCTGATTTGAATCAAATGCACGAAAACGATCGGCTGTCGGTCGGCGGTCGGCGATTTTCGACCGGCCGAAAAGACCCCATTTCTCTGCGTCTCTCGTTGGTCGATTCAAACATTAGCAGACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCATGC</site>
                <isoschizomers>
                    <enzyme>BbuI</enzyme>
                    <enzyme>PaeI</enzyme>
                    <enzyme>SpaHI</enzyme>
                    <enzyme>SphI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>498 192 188 96 13 13</canonical_bands>
                <polymorphic_bands>511 192 188 96 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGAAATATGGAATACATCAGT</pcr_primer_p1>
		<pcr_primer_p2>GCAAAATATCAGGAAAACTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>GCGAAATATGGAATACATCAGTTTCGAGCGGGCAGGCCAACGAGAGACGCATGCGGCGAGAGCATGGGTCTTCAGTAAATTAAGTTTTACCTCGAAATTCTGAAAATTGANAAAGTTATGATCAACACAAGTTTTTTTGGAATATTCCCAAAAAAGTGTTATGTAAGCAAGCTTCGTTATTATTTATTTTTCAAACATCTATTAATTATTTCTGAGTTTGTCACATTTCGAGCTTCAAAATGAGTATAATCATGACCTACTTTCCTCGATTTTCAAATTTCGGACACCCTATGCGCCTTTAAAGGAGGCCAGACACCAAAAAAAAAGAAGTTTTCCTGATATTTTGC</canonical_amplicon>
		<polymorphic_amplicon>GCGAAATATGGAATACATCAGTTTCGAGCGGGCAGGCCAACGAGAGACGCAKGCGGCGAGAGCATGGGTCTTCAGTAAATTAAGTTTTACCTCGAAATTCTGAAAATTGANAAAGTTATGATCAACACAAGTTTTTTTGGAATATTCCCAAAAAAGTGTTATGTAAGCAAGCTTCGTTATTATTTATTTTTCAAACATCTATTAATTATTTCTGAGTTTGTCACATTTCGAGCTTCAAAATGAGTATAATCATGACCTACTTTCCTCGATTTTCAAATTTCGGACACCCTATGCGCCTTTAAAGGAGGCCAGACACCAAAAAAAAAGAAGTTTTCCTGATATTTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20774</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>29266</contig_pos>
        <strand>+</strand>
        <context>GCCAAAGGCG[C/G]TCCAGACAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCG</left_flank>
        <right_flank>TCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAGGATTTTACATTTTTTTGAAAGTAGGAAAAAATTGACAGATTCAGGATCAAAATAAAACGTTTTGAAAAAAATCAAAAAAAGTTTTTTGATCATAACTTTCTCAATTTTCAGAATTTTCTGCTGGAACTCAATTTTTTGAATTTGAAACGTTAAGAGCTTTGAAATGAGTATAAACACGACTAGGCTCCGCCCACTTTGATTTTTCGACTTTAAAGGCGCATAGGGGGTCCGAAATACTGAAAATTTCAAAAGTAGGTCATGATTATACTCATTTTAAAGCTCTTCACGTGGGAAATTCAAAAATCTAAATATTATCTAAGTAAATTAAAAAGTGATCGGTTTAAGATCAATATAAAAATTTATAAAAATACAATTTTTTTCAAAATTTTCATTTTTGGACCATGACTTTCTTCAATTTCAGAATTTTGAGTTAAAACTTAACTTTT</canonical>
            <polymorphic>TCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGSTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAGGATTTTACATTTTTTTGAAAGTAGGAAAAAATTGACAGATTCAGGATCAAAATAAAACGTTTTGAAAAAAATCAAAAAAAGTTTTTTGATCATAACTTTCTCAATTTTCAGAATTTTCTGCTGGAACTCAATTTTTTGAATTTGAAACGTTAAGAGCTTTGAAATGAGTATAAACACGACTAGGCTCCGCCCACTTTGATTTTTCGACTTTAAAGGCGCATAGGGGGTCCGAAATACTGAAAATTTCAAAAGTAGGTCATGATTATACTCATTTTAAAGCTCTTCACGTGGGAAATTCAAAAATCTAAATATTATCTAAGTAAATTAAAAAGTGATCGGTTTAAGATCAATATAAAAATTTATAAAAATACAATTTTTTTCAAAATTTTCATTTTTGGACCATGACTTTCTTCAATTTCAGAATTTTGAGTTAAAACTTAACTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>380 273 228 85 25 9</canonical_bands>
                <polymorphic_bands>380 282 228 85 25</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTCTAAATTTCAGAAAAATCTCA</pcr_primer_p1>
		<pcr_primer_p2>CTAGGGATCTCAAATTTTATGC</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>AACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAG</canonical_amplicon>
		<polymorphic_amplicon>AACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGSTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20775</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>29193</contig_pos>
        <strand>+</strand>
        <context>CATAGATTTG[C/G]CTTAAAATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTG</left_flank>
        <right_flank>CTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGGTGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAGGATTTTACATTTTTTTGAAAGTAGGAAAAAATTGACAGATTCAGGATCAAAATAAAACGTTTTGAAAAAAATCAAAAAAAGTTTTTTGATCATAACTTTCTCAATTTTCAGAATTTTCTGCTGGAACTCAATTTTTTGAATTTGAAACGTTAAGAGCTTTGAAATGAGTATAAACACGACTAGGCTCCGCCCACTTTGATTTTTCGACTTTAAAGGCGCATAGGGGGTCCGAAATACTGAAAATTTCAAAAGTAGGTCATGATTATACTCATTTTAAAGCTCTTCACGTGGGAAATTCAAAAATCTAAATATTATCTAAGTAAATTAAAAAGTGATCGGTTTAAGATCAATATAAAAATTTATAAAAATACAA</canonical>
            <polymorphic>TTTTGGTGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGSCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAGGATTTTACATTTTTTTGAAAGTAGGAAAAAATTGACAGATTCAGGATCAAAATAAAACGTTTTGAAAAAAATCAAAAAAAGTTTTTTGATCATAACTTTCTCAATTTTCAGAATTTTCTGCTGGAACTCAATTTTTTGAATTTGAAACGTTAAGAGCTTTGAAATGAGTATAAACACGACTAGGCTCCGCCCACTTTGATTTTTCGACTTTAAAGGCGCATAGGGGGTCCGAAATACTGAAAATTTCAAAAGTAGGTCATGATTATACTCATTTTAAAGCTCTTCACGTGGGAAATTCAAAAATCTAAATATTATCTAAGTAAATTAAAAAGTGATCGGTTTAAGATCAATATAAAAATTTATAAAAATACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTCTAAATTTCAGAAAAATCTCA</pcr_primer_p1>
		<pcr_primer_p2>CTAGGGATCTCAAATTTTATGC</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>AACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAG</canonical_amplicon>
		<polymorphic_amplicon>AACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGSCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20776</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>29181</contig_pos>
        <strand>+</strand>
        <context>TAAAATTTTG[A/G]GCATAGATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTG</left_flank>
        <right_flank>GCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATTTTTCCCTTTTTGGTGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAGGATTTTACATTTTTTTGAAAGTAGGAAAAAATTGACAGATTCAGGATCAAAATAAAACGTTTTGAAAAAAATCAAAAAAAGTTTTTTGATCATAACTTTCTCAATTTTCAGAATTTTCTGCTGGAACTCAATTTTTTGAATTTGAAACGTTAAGAGCTTTGAAATGAGTATAAACACGACTAGGCTCCGCCCACTTTGATTTTTCGACTTTAAAGGCGCATAGGGGGTCCGAAATACTGAAAATTTCAAAAGTAGGTCATGATTATACTCATTTTAAAGCTCTTCACGTGGGAAATTCAAAAATCTAAATATTATCTAAGTAAATTAAAAAGTGATCGGTTTAAGATCAATATAAAAATTT</canonical>
            <polymorphic>ATATTTTTCCCTTTTTGGTGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGRGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAGGATTTTACATTTTTTTGAAAGTAGGAAAAAATTGACAGATTCAGGATCAAAATAAAACGTTTTGAAAAAAATCAAAAAAAGTTTTTTGATCATAACTTTCTCAATTTTCAGAATTTTCTGCTGGAACTCAATTTTTTGAATTTGAAACGTTAAGAGCTTTGAAATGAGTATAAACACGACTAGGCTCCGCCCACTTTGATTTTTCGACTTTAAAGGCGCATAGGGGGTCCGAAATACTGAAAATTTCAAAAGTAGGTCATGATTATACTCATTTTAAAGCTCTTCACGTGGGAAATTCAAAAATCTAAATATTATCTAAGTAAATTAAAAAGTGATCGGTTTAAGATCAATATAAAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTCTAAATTTCAGAAAAATCTCA</pcr_primer_p1>
		<pcr_primer_p2>CTAGGGATCTCAAATTTTATGC</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>AACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAG</canonical_amplicon>
		<polymorphic_amplicon>AACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGRGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20777</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>29162</contig_pos>
        <strand>+</strand>
        <context>AGGTCTCGAT[G/T]CAAAAATTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGAT</left_flank>
        <right_flank>CAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTAAATTTTTTGAAAAATATTTTTCCCTTTTTGGTGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAGGATTTTACATTTTTTTGAAAGTAGGAAAAAATTGACAGATTCAGGATCAAAATAAAACGTTTTGAAAAAAATCAAAAAAAGTTTTTTGATCATAACTTTCTCAATTTTCAGAATTTTCTGCTGGAACTCAATTTTTTGAATTTGAAACGTTAAGAGCTTTGAAATGAGTATAAACACGACTAGGCTCCGCCCACTTTGATTTTTCGACTTTAAAGGCGCATAGGGGGTCCGAAATACTGAAAATTTCAAAAGTAGGTCATGATTATACTCATTTTAAAGCTCTTCACGTGGGAAATTCAAAAATCTAAATATTATCTAAGTAAATTAAAAAGTGATCGGTTT</canonical>
            <polymorphic>TTTTTAAATTTTTTGAAAAATATTTTTCCCTTTTTGGTGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATKCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAGGATTTTACATTTTTTTGAAAGTAGGAAAAAATTGACAGATTCAGGATCAAAATAAAACGTTTTGAAAAAAATCAAAAAAAGTTTTTTGATCATAACTTTCTCAATTTTCAGAATTTTCTGCTGGAACTCAATTTTTTGAATTTGAAACGTTAAGAGCTTTGAAATGAGTATAAACACGACTAGGCTCCGCCCACTTTGATTTTTCGACTTTAAAGGCGCATAGGGGGTCCGAAATACTGAAAATTTCAAAAGTAGGTCATGATTATACTCATTTTAAAGCTCTTCACGTGGGAAATTCAAAAATCTAAATATTATCTAAGTAAATTAAAAAGTGATCGGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>304 230 225 199 42</canonical_bands>
                <polymorphic_bands>429 304 225 42</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>304 272 225 199</canonical_bands>
                <polymorphic_bands>471 304 225</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTCTAAATTTCAGAAAAATCTCA</pcr_primer_p1>
		<pcr_primer_p2>CTAGGGATCTCAAATTTTATGC</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>AACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAG</canonical_amplicon>
		<polymorphic_amplicon>AACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATKCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20778</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>29113</contig_pos>
        <strand></strand>
        <context>CAAATAGAAA[A/C]AATTTTCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAA</left_flank>
        <right_flank>AATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTTTAAAAGATTTTCACATTAATAGTTGGATTTTCAGACTTAGAACTTTTTAAATTTTTTGAAAAATATTTTTCCCTTTTTGGTGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAGGATTTTACATTTTTTTGAAAGTAGGAAAAAATTGACAGATTCAGGATCAAAATAAAACGTTTTGAAAAAAATCAAAAAAAGTTTTTTGATCATAACTTTCTCAATTTTCAGAATTTTCTGCTGGAACTCAATTTTTTGAATTTGAAACGTTAAGAGCTTTGAAATGAGTATAAACACGACTAGGCTCCGCCCACTTTGATTTTTCGACTTTAAAGGCGCATAGGGGGTCCGAAATACTGAAAATTTCAAAAGTAGGTCATGATTATACTCATTTTAAAGCTCTTCACGTGGGA</canonical>
            <polymorphic>GATTTTTAAAAGATTTTCACATTAATAGTTGGATTTTCAGACTTAGAACTTTTTAAATTTTTTGAAAAATATTTTTCCCTTTTTGGTGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAMAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAGGATTTTACATTTTTTTGAAAGTAGGAAAAAATTGACAGATTCAGGATCAAAATAAAACGTTTTGAAAAAAATCAAAAAAAGTTTTTTGATCATAACTTTCTCAATTTTCAGAATTTTCTGCTGGAACTCAATTTTTTGAATTTGAAACGTTAAGAGCTTTGAAATGAGTATAAACACGACTAGGCTCCGCCCACTTTGATTTTTCGACTTTAAAGGCGCATAGGGGGTCCGAAATACTGAAAATTTCAAAAGTAGGTCATGATTATACTCATTTTAAAGCTCTTCACGTGGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>285 127 103 70 67 55 52 49 44 29 29 27 25 10 8 7 7 6</canonical_bands>
                <polymorphic_bands>285 127 103 70 67 57 55 52 44 29 29 27 25 10 7 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTCTAAATTTCAGAAAAATCTCA</pcr_primer_p1>
		<pcr_primer_p2>CTAGGGATCTCAAATTTTATGC</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>AACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAG</canonical_amplicon>
		<polymorphic_amplicon>AACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAMAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20779</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>29096</contig_pos>
        <strand></strand>
        <context>AAAGGAAACC[A/C]AAGAAGCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACC</left_flank>
        <right_flank>AAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGAAAATTTTTCTAGATTTTTAAAAGATTTTCACATTAATAGTTGGATTTTCAGACTTAGAACTTTTTAAATTTTTTGAAAAATATTTTTCCCTTTTTGGTGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAGGATTTTACATTTTTTTGAAAGTAGGAAAAAATTGACAGATTCAGGATCAAAATAAAACGTTTTGAAAAAAATCAAAAAAAGTTTTTTGATCATAACTTTCTCAATTTTCAGAATTTTCTGCTGGAACTCAATTTTTTGAATTTGAAACGTTAAGAGCTTTGAAATGAGTATAAACACGACTAGGCTCCGCCCACTTTGATTTTTCGACTTTAAAGGCGCATAGGGGGTCCGAAATACTGAAAATTTCAAAAGTAGGTCATGATTATACTCATTTTA</canonical>
            <polymorphic>TTTTGAAAATTTTTCTAGATTTTTAAAAGATTTTCACATTAATAGTTGGATTTTCAGACTTAGAACTTTTTAAATTTTTTGAAAAATATTTTTCCCTTTTTGGTGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCMAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAGGATTTTACATTTTTTTGAAAGTAGGAAAAAATTGACAGATTCAGGATCAAAATAAAACGTTTTGAAAAAAATCAAAAAAAGTTTTTTGATCATAACTTTCTCAATTTTCAGAATTTTCTGCTGGAACTCAATTTTTTGAATTTGAAACGTTAAGAGCTTTGAAATGAGTATAAACACGACTAGGCTCCGCCCACTTTGATTTTTCGACTTTAAAGGCGCATAGGGGGTCCGAAATACTGAAAATTTCAAAAGTAGGTCATGATTATACTCATTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTGGGAAAATTGAAA</pcr_primer_p1>
		<pcr_primer_p2>CGTATTTTAAGCAAGGAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCMAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20780</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>29053</contig_pos>
        <strand></strand>
        <context>TTGAAAAATC[A/C]TAAAAACTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATC</left_flank>
        <right_flank>TAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAGATAGGTGATATTTTCTAAGAAATTTTTTTTTTTTGAAATTTTGAAAATTTTTCTAGATTTTTAAAAGATTTTCACATTAATAGTTGGATTTTCAGACTTAGAACTTTTTAAATTTTTTGAAAAATATTTTTCCCTTTTTGGTGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAGGATTTTACATTTTTTTGAAAGTAGGAAAAAATTGACAGATTCAGGATCAAAATAAAACGTTTTGAAAAAAATCAAAAAAAGTTTTTTGATCATAACTTTCTCAATTTTCAGAATTTTCTGCTGGAACTCAATTTTTTGAATTTGAAACGTTAAGAGCTTTGAAATGAGTATAAACACGACTAGGCTCCGCCCACTTTGATTTTTCGACTTTAAAGGCGCATAGGGGGTCCGAA</canonical>
            <polymorphic>TTGAGATAGGTGATATTTTCTAAGAAATTTTTTTTTTTTGAAATTTTGAAAATTTTTCTAGATTTTTAAAAGATTTTCACATTAATAGTTGGATTTTCAGACTTAGAACTTTTTAAATTTTTTGAAAAATATTTTTCCCTTTTTGGTGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCMTAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAGGATTTTACATTTTTTTGAAAGTAGGAAAAAATTGACAGATTCAGGATCAAAATAAAACGTTTTGAAAAAAATCAAAAAAAGTTTTTTGATCATAACTTTCTCAATTTTCAGAATTTTCTGCTGGAACTCAATTTTTTGAATTTGAAACGTTAAGAGCTTTGAAATGAGTATAAACACGACTAGGCTCCGCCCACTTTGATTTTTCGACTTTAAAGGCGCATAGGGGGTCCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCTCTCCTTATCAGTTATCA</pcr_primer_p1>
		<pcr_primer_p2>CGTATTTTAAGCAAGGAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>293</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCMTAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20781</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>29022</contig_pos>
        <strand>+</strand>
        <context>CAGTTTCAAA[A/G]TTTTGGGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAA</left_flank>
        <right_flank>TTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTGACAGAGTTATGACCGAAAATAATTTTGAGATAGGTGATATTTTCTAAGAAATTTTTTTTTTTTGAAATTTTGAAAATTTTTCTAGATTTTTAAAAGATTTTCACATTAATAGTTGGATTTTCAGACTTAGAACTTTTTAAATTTTTTGAAAAATATTTTTCCCTTTTTGGTGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAGGATTTTACATTTTTTTGAAAGTAGGAAAAAATTGACAGATTCAGGATCAAAATAAAACGTTTTGAAAAAAATCAAAAAAAGTTTTTTGATCATAACTTTCTCAATTTTCAGAATTTTCTGCTGGAACTCAATTTTTTGAATTTGAAACGTTAAGAGCTTTGAAATGAGTATAAACACGACTAGGCTCCGCCCACTTTGATTT</canonical>
            <polymorphic>AAATTTGACAGAGTTATGACCGAAAATAATTTTGAGATAGGTGATATTTTCTAAGAAATTTTTTTTTTTTGAAATTTTGAAAATTTTTCTAGATTTTTAAAAGATTTTCACATTAATAGTTGGATTTTCAGACTTAGAACTTTTTAAATTTTTTGAAAAATATTTTTCCCTTTTTGGTGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAARTTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAGGATTTTACATTTTTTTGAAAGTAGGAAAAAATTGACAGATTCAGGATCAAAATAAAACGTTTTGAAAAAAATCAAAAAAAGTTTTTTGATCATAACTTTCTCAATTTTCAGAATTTTCTGCTGGAACTCAATTTTTTGAATTTGAAACGTTAAGAGCTTTGAAATGAGTATAAACACGACTAGGCTCCGCCCACTTTGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>285 127 70 67 65 64 55 49 44 29 29 27 25 16 10 9 8 7 7 6 1</canonical_bands>
                <polymorphic_bands>285 127 111 70 65 64 55 49 29 29 27 25 16 10 9 8 7 7 6 1</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>144 141 73 67 65 64 49 45 39 29 29 29 26 25 24 18 16 16 15 11 10 9 9 9 9 8 7 7 6 1</canonical_bands>
                <polymorphic_bands>144 141 78 73 65 64 49 45 39 29 29 29 26 25 24 18 16 16 15 10 9 9 9 9 8 7 7 6 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTTCTATCAAAATCAACAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGATTTTTCTGAAATTTAGAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTC</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAARTTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20782</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>28886</contig_pos>
        <strand>+</strand>
        <context>GCGAGAAAAG[C/G]GAATCAATGG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAG</left_flank>
        <right_flank>GAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTTGATTTTCCCACTTTAAAGGCGCATAGGGGGACCGAAATTTGAAATTTAAGGAAAGTGGGTCATAATTATACTCATTTTGAAGCTCTAGACGTGAGAAATATGAAAATGAAGCTTTCAGCTGAAAATATCCAAATTTGACAGAGTTATGACCGAAAATAATTTTGAGATAGGTGATATTTTCTAAGAAATTTTTTTTTTTTGAAATTTTGAAAATTTTTCTAGATTTTTAAAAGATTTTCACATTAATAGTTGGATTTTCAGACTTAGAACTTTTTAAATTTTTTGAAAAATATTTTTCCCTTTTTGGTGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAGGATTTTACATTTTTTTGAAAGTAGGAAAAAATTGACAGATTCAGGATCAAAATAAAACGTTTTGAA</canonical>
            <polymorphic>CATTTTGATTTTCCCACTTTAAAGGCGCATAGGGGGACCGAAATTTGAAATTTAAGGAAAGTGGGTCATAATTATACTCATTTTGAAGCTCTAGACGTGAGAAATATGAAAATGAAGCTTTCAGCTGAAAATATCCAAATTTGACAGAGTTATGACCGAAAATAATTTTGAGATAGGTGATATTTTCTAAGAAATTTTTTTTTTTTGAAATTTTGAAAATTTTTCTAGATTTTTAAAAGATTTTCACATTAATAGTTGGATTTTCAGACTTAGAACTTTTTAAATTTTTTGAAAAATATTTTTCCCTTTTTGGTGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGSGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAGGATTTTACATTTTTTTGAAAGTAGGAAAAAATTGACAGATTCAGGATCAAAATAAAACGTTTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCTTCCATATACATGCTCAG</pcr_primer_p1>
		<pcr_primer_p2>TGTCTGTTTTCTCTAGACTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACA</canonical_amplicon>
		<polymorphic_amplicon>TGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGSGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20783</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>28864</contig_pos>
        <strand>+</strand>
        <context>CAAATAAATG[A/G]CTATCTTAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATG</left_flank>
        <right_flank>CTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAACACGAATAGGCTCTGCTCATTTTGATTTTCCCACTTTAAAGGCGCATAGGGGGACCGAAATTTGAAATTTAAGGAAAGTGGGTCATAATTATACTCATTTTGAAGCTCTAGACGTGAGAAATATGAAAATGAAGCTTTCAGCTGAAAATATCCAAATTTGACAGAGTTATGACCGAAAATAATTTTGAGATAGGTGATATTTTCTAAGAAATTTTTTTTTTTTGAAATTTTGAAAATTTTTCTAGATTTTTAAAAGATTTTCACATTAATAGTTGGATTTTCAGACTTAGAACTTTTTAAATTTTTTGAAAAATATTTTTCCCTTTTTGGTGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAGGATTTTACATTTTTTTGAAAGTAGGAAAAAATTGACAGATTCAG</canonical>
            <polymorphic>ATAAACACGAATAGGCTCTGCTCATTTTGATTTTCCCACTTTAAAGGCGCATAGGGGGACCGAAATTTGAAATTTAAGGAAAGTGGGTCATAATTATACTCATTTTGAAGCTCTAGACGTGAGAAATATGAAAATGAAGCTTTCAGCTGAAAATATCCAAATTTGACAGAGTTATGACCGAAAATAATTTTGAGATAGGTGATATTTTCTAAGAAATTTTTTTTTTTTGAAATTTTGAAAATTTTTCTAGATTTTTAAAAGATTTTCACATTAATAGTTGGATTTTCAGACTTAGAACTTTTTAAATTTTTTGAAAAATATTTTTCCCTTTTTGGTGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGRCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAGGATTTTACATTTTTTTGAAAGTAGGAAAAAATTGACAGATTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>506 390 104</canonical_bands>
                <polymorphic_bands>896 104</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>500 354 95 29 15 7</canonical_bands>
                <polymorphic_bands>854 95 29 15 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTCTTCCATATACATGCTCAG</pcr_primer_p1>
		<pcr_primer_p2>TGTCTGTTTTCTCTAGACTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACA</canonical_amplicon>
		<polymorphic_amplicon>TGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGRCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20784</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>28832</contig_pos>
        <strand>+</strand>
        <context>CACTCTCTCG[C/T]CTCTTTTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCG</left_flank>
        <right_flank>CTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTTTATGGTGTGAAGAGCTTTGAAATGAGTATAAACACGAATAGGCTCTGCTCATTTTGATTTTCCCACTTTAAAGGCGCATAGGGGGACCGAAATTTGAAATTTAAGGAAAGTGGGTCATAATTATACTCATTTTGAAGCTCTAGACGTGAGAAATATGAAAATGAAGCTTTCAGCTGAAAATATCCAAATTTGACAGAGTTATGACCGAAAATAATTTTGAGATAGGTGATATTTTCTAAGAAATTTTTTTTTTTTGAAATTTTGAAAATTTTTCTAGATTTTTAAAAGATTTTCACATTAATAGTTGGATTTTCAGACTTAGAACTTTTTAAATTTTTTGAAAAATATTTTTCCCTTTTTGGTGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAGGATTTTACATTT</canonical>
            <polymorphic>GAGTTTATGGTGTGAAGAGCTTTGAAATGAGTATAAACACGAATAGGCTCTGCTCATTTTGATTTTCCCACTTTAAAGGCGCATAGGGGGACCGAAATTTGAAATTTAAGGAAAGTGGGTCATAATTATACTCATTTTGAAGCTCTAGACGTGAGAAATATGAAAATGAAGCTTTCAGCTGAAAATATCCAAATTTGACAGAGTTATGACCGAAAATAATTTTGAGATAGGTGATATTTTCTAAGAAATTTTTTTTTTTTGAAATTTTGAAAATTTTTCTAGATTTTTAAAAGATTTTCACATTAATAGTTGGATTTTCAGACTTAGAACTTTTTAAATTTTTTGAAAAATATTTTTCCCTTTTTGGTGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGYCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAGGATTTTACATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCTTCCATATACATGCTCAG</pcr_primer_p1>
		<pcr_primer_p2>TGTCTGTTTTCTCTAGACTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACA</canonical_amplicon>
		<polymorphic_amplicon>TGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGYCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20785</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>28757</contig_pos>
        <strand>+</strand>
        <context>CTATACATAT[C/G]GACGACACGT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATAT</left_flank>
        <right_flank>GACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGT</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAATATTCCAAAAAAACTTGTGTTGATCATAACTTTCTCAATTTTCAGAATTTCGAGCTAAAACTTAATTTATTGAGTTTATGGTGTGAAGAGCTTTGAAATGAGTATAAACACGAATAGGCTCTGCTCATTTTGATTTTCCCACTTTAAAGGCGCATAGGGGGACCGAAATTTGAAATTTAAGGAAAGTGGGTCATAATTATACTCATTTTGAAGCTCTAGACGTGAGAAATATGAAAATGAAGCTTTCAGCTGAAAATATCCAAATTTGACAGAGTTATGACCGAAAATAATTTTGAGATAGGTGATATTTTCTAAGAAATTTTTTTTTTTTGAAATTTTGAAAATTTTTCTAGATTTTTAAAAGATTTTCACATTAATAGTTGGATTTTCAGACTTAGAACTTTTTAAATTTTTTGAAAAATATTTTTCCCTTTTTGGTGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGC</canonical>
            <polymorphic>GGAATATTCCAAAAAAACTTGTGTTGATCATAACTTTCTCAATTTTCAGAATTTCGAGCTAAAACTTAATTTATTGAGTTTATGGTGTGAAGAGCTTTGAAATGAGTATAAACACGAATAGGCTCTGCTCATTTTGATTTTCCCACTTTAAAGGCGCATAGGGGGACCGAAATTTGAAATTTAAGGAAAGTGGGTCATAATTATACTCATTTTGAAGCTCTAGACGTGAGAAATATGAAAATGAAGCTTTCAGCTGAAAATATCCAAATTTGACAGAGTTATGACCGAAAATAATTTTGAGATAGGTGATATTTTCTAAGAAATTTTTTTTTTTTGAAATTTTGAAAATTTTTCTAGATTTTTAAAAGATTTTCACATTAATAGTTGGATTTTCAGACTTAGAACTTTTTAAATTTTTTGAAAAATATTTTTCCCTTTTTGGTGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATSGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATATG</site>
                <isoschizomers>
                    <enzyme>FauNDI</enzyme>
                    <enzyme>NdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTCTTCCATATACATGCTCAG</pcr_primer_p1>
		<pcr_primer_p2>TGTCTGTTTTCTCTAGACTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACA</canonical_amplicon>
		<polymorphic_amplicon>TGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATSGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20789</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>48361</contig_pos>
        <strand>+</strand>
        <context>AAAAGATCAC[C/T]AARGCCAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAGCCAATTTTCCACTCAAAAATATCGATTTTCAGGTGAAAAAGATCAC</left_flank>
        <right_flank>AAAGCCAAATTTAAGGATGAGCAATTGTCATTTTTGGTCATCTGGGATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCCATGGCTAACAGCGTTCCAATTAGGGACAGTTCGACTCCGACACAGTTCGAATTTCGCGCAGTTCGATTCTGCTCTTGTTCTGTTTTGACACATGTTCGATTTTAGGTCTGTTCGATTTTGGAAGCGTTCGAATTCGTCGTACCCCCCACTACGAATTCCCGGAAAACCGCGGAAAATCGATTTTCCAGTGTTTTTGAGCGATTTTCCAAAAAATGCCCGAGTGGCTCAGTGGGATTTTCGATAGCAATCTGAAGACCCGAGTTCGATTCCGCTCGGCGGCAAATGCTATTTGCTTCTTTTTTTATAGCATTTTCAGACTGTTTCAAAGCCGAAAATTGAGAAAATCTGAAAATTTCGAAAAATATAATTTTCGAAAAAAAAATTTTTTTTCGAAAAACTCAATTTTCATGTTTTTTGGGCCTTAATTTTCAGAAAATGCTCATTTTAAGCCAATTTTCCACTCAAAAATATCGATTTTCAGGTGAAAAAGATCACTAAAGCCAAATTTAAGGATGAGCAATTGTCATTTTTGGTCATCTGGGATATCGATCGATCGCTCACTTGGGAACCATTGGAATCATTTTCCGGAGGTCTTCAACATGAAAGAATTCGAAATTTCGCAAAGAAAAATCCCCAAAAATGGGCGTATTTGATGAAAAGTAGGCCGAAATTTTTTTTCCCAAAATTTTGAATTTTTCAGAGATCCCAGACAATCTTCGAGAGGCATTGCTCAGCGCAAAAAATGACGCCATGGCTACAATAACCGATGGACCGGATATCGATTTCATCGAGGAGAAGCGCACTGGATTCGAAAATGAACAAGTTGTGGTTAAAGAAGAGCAGGAGGAGCATATTCAGGGGTAAAAAAGCCTAAAAATGGTCTAAAATGACCTAAAAATAGTCAAAAATGACTTAAAAATGGTCCAAAACAGCCGAAAAATAATCAAAAATGGTCCAAAATGACCTAAAAATGGTCCAAAATGACCTAAAAATGGT</canonical>
            <polymorphic>CCCCATGGCTAACAGCGTTCCAATTAGGGACAGTTCGACTCCGACACAGTTCGAATTTCGCGCAGTTCGATTCTGCTCTTGTTCTGTTTTGACACATGTTCGATTTTAGGTCTGTTCGATTTTGGAAGCGTTCGAATTCGTCGTACCCCCCACTACGAATTCCCGGAAAACCGCGGAAAATCGATTTTCCAGTGTTTTTGAGCGATTTTCCAAAAAATGCCCGAGTGGCTCAGTGGGATTTTCGATAGCAATCTGAAGACCCGAGTTCGATTCCGCTCGGCGGCAAATGCTATTTGCTTCTTTTTTTATAGCATTTTCAGACTGTTTCAAAGCCGAAAATTGAGAAAATCTGAAAATTTCGAAAAATATAATTTTCGAAAAAAAAATTTTTTTTCGAAAAACTCAATTTTCATGTTTTTTGGGCCTTAATTTTCAGAAAATGCTCATTTTAAGCCAATTTTCCACTCAAAAATATCGATTTTCAGGTGAAAAAGATCACYAAAGCCAAATTTAAGGATGAGCAATTGTCATTTTTGGTCATCTGGGATATCGATCGATCGCTCACTTGGGAACCATTGGAATCATTTTCCGGAGGTCTTCAACATGAAAGAATTCGAAATTTCGCAAAGAAAAATCCCCAAAAATGGGCGTATTTGATGAAAAGTAGGCCGAAATTTTTTTTCCCAAAATTTTGAATTTTTCAGAGATCCCAGACAATCTTCGAGAGGCATTGCTCAGCGCAAAAAATGACGCCATGGCTACAATAACCGATGGACCGGATATCGATTTCATCGAGGAGAAGCGCACTGGATTCGAAAATGAACAAGTTGTGGTTAAAGAAGAGCAGGAGGAGCATATTCAGGGGTAAAAAAGCCTAAAAATGGTCTAAAATGACCTAAAAATAGTCAAAAATGACTTAAAAATGGTCCAAAACAGCCGAAAAATAATCAAAAATGGTCCAAAATGACCTAAAAATGGTCCAAAATGACCTAAAAATGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGCTCATTTTAAGCCAATTT</pcr_primer_p1>
		<pcr_primer_p2>AATTTCGGCCTACTTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>ATGCTCATTTTAAGCCAATTTTCCACTCAAAAATATCGATTTTCAGGTGAAAAAGATCACTAAAGCCAAATTTAAGGATGAGCAATTGTCATTTTTGGTCATCTGGGATATCGATCGATCGCTCACTTGGGAACCATTGGAATCATTTTCCGGAGGTCTTCAACATGAAAGAATTCGAAATTTCGCAAAGAAAAATCCCCAAAAATGGGCGTATTTGATGAAAAGTAGGCCGAAATT</canonical_amplicon>
		<polymorphic_amplicon>ATGCTCATTTTAAGCCAATTTTCCACTCAAAAATATCGATTTTCAGGTGAAAAAGATCACYAAAGCCAAATTTAAGGATGAGCAATTGTCATTTTTGGTCATCTGGGATATCGATCGATCGCTCACTTGGGAACCATTGGAATCATTTTCCGGAGGTCTTCAACATGAAAGAATTCGAAATTTCGCAAAGAAAAATCCCCAAAAATGGGCGTATTTGATGAAAAGTAGGCCGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20790</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>48364</contig_pos>
        <strand>+</strand>
        <context>AGATCACYAA[A/G]GCCAAATTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCAATTTTCCACTCAAAAATATCGATTTTCAGGTGAAAAAGATCACTAA</left_flank>
        <right_flank>GCCAAATTTAAGGATGAGCAATTGTCATTTTTGGTCATCTGGGATATCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGGCTAACAGCGTTCCAATTAGGGACAGTTCGACTCCGACACAGTTCGAATTTCGCGCAGTTCGATTCTGCTCTTGTTCTGTTTTGACACATGTTCGATTTTAGGTCTGTTCGATTTTGGAAGCGTTCGAATTCGTCGTACCCCCCACTACGAATTCCCGGAAAACCGCGGAAAATCGATTTTCCAGTGTTTTTGAGCGATTTTCCAAAAAATGCCCGAGTGGCTCAGTGGGATTTTCGATAGCAATCTGAAGACCCGAGTTCGATTCCGCTCGGCGGCAAATGCTATTTGCTTCTTTTTTTATAGCATTTTCAGACTGTTTCAAAGCCGAAAATTGAGAAAATCTGAAAATTTCGAAAAATATAATTTTCGAAAAAAAAATTTTTTTTCGAAAAACTCAATTTTCATGTTTTTTGGGCCTTAATTTTCAGAAAATGCTCATTTTAAGCCAATTTTCCACTCAAAAATATCGATTTTCAGGTGAAAAAGATCACTAAAGCCAAATTTAAGGATGAGCAATTGTCATTTTTGGTCATCTGGGATATCGATCGATCGCTCACTTGGGAACCATTGGAATCATTTTCCGGAGGTCTTCAACATGAAAGAATTCGAAATTTCGCAAAGAAAAATCCCCAAAAATGGGCGTATTTGATGAAAAGTAGGCCGAAATTTTTTTTCCCAAAATTTTGAATTTTTCAGAGATCCCAGACAATCTTCGAGAGGCATTGCTCAGCGCAAAAAATGACGCCATGGCTACAATAACCGATGGACCGGATATCGATTTCATCGAGGAGAAGCGCACTGGATTCGAAAATGAACAAGTTGTGGTTAAAGAAGAGCAGGAGGAGCATATTCAGGGGTAAAAAAGCCTAAAAATGGTCTAAAATGACCTAAAAATAGTCAAAAATGACTTAAAAATGGTCCAAAACAGCCGAAAAATAATCAAAAATGGTCCAAAATGACCTAAAAATGGTCCAAAATGACCTAAAAATGGTCCA</canonical>
            <polymorphic>CATGGCTAACAGCGTTCCAATTAGGGACAGTTCGACTCCGACACAGTTCGAATTTCGCGCAGTTCGATTCTGCTCTTGTTCTGTTTTGACACATGTTCGATTTTAGGTCTGTTCGATTTTGGAAGCGTTCGAATTCGTCGTACCCCCCACTACGAATTCCCGGAAAACCGCGGAAAATCGATTTTCCAGTGTTTTTGAGCGATTTTCCAAAAAATGCCCGAGTGGCTCAGTGGGATTTTCGATAGCAATCTGAAGACCCGAGTTCGATTCCGCTCGGCGGCAAATGCTATTTGCTTCTTTTTTTATAGCATTTTCAGACTGTTTCAAAGCCGAAAATTGAGAAAATCTGAAAATTTCGAAAAATATAATTTTCGAAAAAAAAATTTTTTTTCGAAAAACTCAATTTTCATGTTTTTTGGGCCTTAATTTTCAGAAAATGCTCATTTTAAGCCAATTTTCCACTCAAAAATATCGATTTTCAGGTGAAAAAGATCACTAARGCCAAATTTAAGGATGAGCAATTGTCATTTTTGGTCATCTGGGATATCGATCGATCGCTCACTTGGGAACCATTGGAATCATTTTCCGGAGGTCTTCAACATGAAAGAATTCGAAATTTCGCAAAGAAAAATCCCCAAAAATGGGCGTATTTGATGAAAAGTAGGCCGAAATTTTTTTTCCCAAAATTTTGAATTTTTCAGAGATCCCAGACAATCTTCGAGAGGCATTGCTCAGCGCAAAAAATGACGCCATGGCTACAATAACCGATGGACCGGATATCGATTTCATCGAGGAGAAGCGCACTGGATTCGAAAATGAACAAGTTGTGGTTAAAGAAGAGCAGGAGGAGCATATTCAGGGGTAAAAAAGCCTAAAAATGGTCTAAAATGACCTAAAAATAGTCAAAAATGACTTAAAAATGGTCCAAAACAGCCGAAAAATAATCAAAAATGGTCCAAAATGACCTAAAAATGGTCCAAAATGACCTAAAAATGGTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>220 164 115 104 91 90 67 63 51 30 5</canonical_bands>
                <polymorphic_bands>220 215 115 104 91 90 67 63 30 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGCTCATTTTAAGCCAATTT</pcr_primer_p1>
		<pcr_primer_p2>AATTTCGGCCTACTTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>ATGCTCATTTTAAGCCAATTTTCCACTCAAAAATATCGATTTTCAGGTGAAAAAGATCACTAAAGCCAAATTTAAGGATGAGCAATTGTCATTTTTGGTCATCTGGGATATCGATCGATCGCTCACTTGGGAACCATTGGAATCATTTTCCGGAGGTCTTCAACATGAAAGAATTCGAAATTTCGCAAAGAAAAATCCCCAAAAATGGGCGTATTTGATGAAAAGTAGGCCGAAATT</canonical_amplicon>
		<polymorphic_amplicon>ATGCTCATTTTAAGCCAATTTTCCACTCAAAAATATCGATTTTCAGGTGAAAAAGATCACTAARGCCAAATTTAAGGATGAGCAATTGTCATTTTTGGTCATCTGGGATATCGATCGATCGCTCACTTGGGAACCATTGGAATCATTTTCCGGAGGTCTTCAACATGAAAGAATTCGAAATTTCGCAAAGAAAAATCCCCAAAAATGGGCGTATTTGATGAAAAGTAGGCCGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20791</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>48426</contig_pos>
        <strand>+</strand>
        <context>CGATCGCTCA[C/G]TTGGGAACCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGATGAGCAATTGTCATTTTTGGTCATCTGGGATATCGATCGATCGCTCA</left_flank>
        <right_flank>TTGGGAACCATTGGAATCATTTTCCGGAGGTCTTCAACATGAAAGAATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGATTCTGCTCTTGTTCTGTTTTGACACATGTTCGATTTTAGGTCTGTTCGATTTTGGAAGCGTTCGAATTCGTCGTACCCCCCACTACGAATTCCCGGAAAACCGCGGAAAATCGATTTTCCAGTGTTTTTGAGCGATTTTCCAAAAAATGCCCGAGTGGCTCAGTGGGATTTTCGATAGCAATCTGAAGACCCGAGTTCGATTCCGCTCGGCGGCAAATGCTATTTGCTTCTTTTTTTATAGCATTTTCAGACTGTTTCAAAGCCGAAAATTGAGAAAATCTGAAAATTTCGAAAAATATAATTTTCGAAAAAAAAATTTTTTTTCGAAAAACTCAATTTTCATGTTTTTTGGGCCTTAATTTTCAGAAAATGCTCATTTTAAGCCAATTTTCCACTCAAAAATATCGATTTTCAGGTGAAAAAGATCACTAAAGCCAAATTTAAGGATGAGCAATTGTCATTTTTGGTCATCTGGGATATCGATCGATCGCTCACTTGGGAACCATTGGAATCATTTTCCGGAGGTCTTCAACATGAAAGAATTCGAAATTTCGCAAAGAAAAATCCCCAAAAATGGGCGTATTTGATGAAAAGTAGGCCGAAATTTTTTTTCCCAAAATTTTGAATTTTTCAGAGATCCCAGACAATCTTCGAGAGGCATTGCTCAGCGCAAAAAATGACGCCATGGCTACAATAACCGATGGACCGGATATCGATTTCATCGAGGAGAAGCGCACTGGATTCGAAAATGAACAAGTTGTGGTTAAAGAAGAGCAGGAGGAGCATATTCAGGGGTAAAAAAGCCTAAAAATGGTCTAAAATGACCTAAAAATAGTCAAAAATGACTTAAAAATGGTCCAAAACAGCCGAAAAATAATCAAAAATGGTCCAAAATGACCTAAAAATGGTCCAAAATGACCTAAAAATGGTCCAAAATAGCCGAAAAATGATCAAAAATGACTTAAAAATGGTCCAAAATTGCCGAAAAATGATCA</canonical>
            <polymorphic>TTCGATTCTGCTCTTGTTCTGTTTTGACACATGTTCGATTTTAGGTCTGTTCGATTTTGGAAGCGTTCGAATTCGTCGTACCCCCCACTACGAATTCCCGGAAAACCGCGGAAAATCGATTTTCCAGTGTTTTTGAGCGATTTTCCAAAAAATGCCCGAGTGGCTCAGTGGGATTTTCGATAGCAATCTGAAGACCCGAGTTCGATTCCGCTCGGCGGCAAATGCTATTTGCTTCTTTTTTTATAGCATTTTCAGACTGTTTCAAAGCCGAAAATTGAGAAAATCTGAAAATTTCGAAAAATATAATTTTCGAAAAAAAAATTTTTTTTCGAAAAACTCAATTTTCATGTTTTTTGGGCCTTAATTTTCAGAAAATGCTCATTTTAAGCCAATTTTCCACTCAAAAATATCGATTTTCAGGTGAAAAAGATCACTAAAGCCAAATTTAAGGATGAGCAATTGTCATTTTTGGTCATCTGGGATATCGATCGATCGCTCASTTGGGAACCATTGGAATCATTTTCCGGAGGTCTTCAACATGAAAGAATTCGAAATTTCGCAAAGAAAAATCCCCAAAAATGGGCGTATTTGATGAAAAGTAGGCCGAAATTTTTTTTCCCAAAATTTTGAATTTTTCAGAGATCCCAGACAATCTTCGAGAGGCATTGCTCAGCGCAAAAAATGACGCCATGGCTACAATAACCGATGGACCGGATATCGATTTCATCGAGGAGAAGCGCACTGGATTCGAAAATGAACAAGTTGTGGTTAAAGAAGAGCAGGAGGAGCATATTCAGGGGTAAAAAAGCCTAAAAATGGTCTAAAATGACCTAAAAATAGTCAAAAATGACTTAAAAATGGTCCAAAACAGCCGAAAAATAATCAAAAATGGTCCAAAATGACCTAAAAATGGTCCAAAATGACCTAAAAATGGTCCAAAATAGCCGAAAAATGATCAAAAATGACTTAAAAATGGTCCAAAATTGCCGAAAAATGATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>242 233 229 66 58 42 33 29 26 24 10 8</canonical_bands>
                <polymorphic_bands>308 233 229 58 42 33 29 26 24 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAAAATATCGATTTTCAGGT</pcr_primer_p1>
		<pcr_primer_p2>TCTGGGATCTCTGAAAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCAAAAATATCGATTTTCAGGTGAAAAAGATCACTAAAGCCAAATTTAAGGATGAGCAATTGTCATTTTTGGTCATCTGGGATATCGATCGATCGCTCACTTGGGAACCATTGGAATCATTTTCCGGAGGTCTTCAACATGAAAGAATTCGAAATTTCGCAAAGAAAAATCCCCAAAAATGGGCGTATTTGATGAAAAGTAGGCCGAAATTTTTTTTCCCAAAATTTTGAATTTTTCAGAGATCCCAGA</canonical_amplicon>
		<polymorphic_amplicon>TCAAAAATATCGATTTTCAGGTGAAAAAGATCACTAAAGCCAAATTTAAGGATGAGCAATTGTCATTTTTGGTCATCTGGGATATCGATCGATCGCTCASTTGGGAACCATTGGAATCATTTTCCGGAGGTCTTCAACATGAAAGAATTCGAAATTTCGCAAAGAAAAATCCCCAAAAATGGGCGTATTTGATGAAAAGTAGGCCGAAATTTTTTTTCCCAAAATTTTGAATTTTTCAGAGATCCCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20792</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>48479</contig_pos>
        <strand>+</strand>
        <context>AAGAATTCGA[A/G]ATTTCGCRAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGAACCATTGGAATCATTTTCCGGAGGTCTTCAACATGAAAGAATTCGA</left_flank>
        <right_flank>ATTTCGCAAAGAAAAATCCCCAAAAATGGGCGTATTTGATGAAAAGTAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTGGAAGCGTTCGAATTCGTCGTACCCCCCACTACGAATTCCCGGAAAACCGCGGAAAATCGATTTTCCAGTGTTTTTGAGCGATTTTCCAAAAAATGCCCGAGTGGCTCAGTGGGATTTTCGATAGCAATCTGAAGACCCGAGTTCGATTCCGCTCGGCGGCAAATGCTATTTGCTTCTTTTTTTATAGCATTTTCAGACTGTTTCAAAGCCGAAAATTGAGAAAATCTGAAAATTTCGAAAAATATAATTTTCGAAAAAAAAATTTTTTTTCGAAAAACTCAATTTTCATGTTTTTTGGGCCTTAATTTTCAGAAAATGCTCATTTTAAGCCAATTTTCCACTCAAAAATATCGATTTTCAGGTGAAAAAGATCACTAAAGCCAAATTTAAGGATGAGCAATTGTCATTTTTGGTCATCTGGGATATCGATCGATCGCTCACTTGGGAACCATTGGAATCATTTTCCGGAGGTCTTCAACATGAAAGAATTCGAAATTTCGCAAAGAAAAATCCCCAAAAATGGGCGTATTTGATGAAAAGTAGGCCGAAATTTTTTTTCCCAAAATTTTGAATTTTTCAGAGATCCCAGACAATCTTCGAGAGGCATTGCTCAGCGCAAAAAATGACGCCATGGCTACAATAACCGATGGACCGGATATCGATTTCATCGAGGAGAAGCGCACTGGATTCGAAAATGAACAAGTTGTGGTTAAAGAAGAGCAGGAGGAGCATATTCAGGGGTAAAAAAGCCTAAAAATGGTCTAAAATGACCTAAAAATAGTCAAAAATGACTTAAAAATGGTCCAAAACAGCCGAAAAATAATCAAAAATGGTCCAAAATGACCTAAAAATGGTCCAAAATGACCTAAAAATGGTCCAAAATAGCCGAAAAATGATCAAAAATGACTTAAAAATGGTCCAAAATTGCCGAAAAATGATCAAAAATGGCCCAAAAATGGTCCAAAATGACATAAAAATGGTCCAAAACAGCCGA</canonical>
            <polymorphic>ATTTTGGAAGCGTTCGAATTCGTCGTACCCCCCACTACGAATTCCCGGAAAACCGCGGAAAATCGATTTTCCAGTGTTTTTGAGCGATTTTCCAAAAAATGCCCGAGTGGCTCAGTGGGATTTTCGATAGCAATCTGAAGACCCGAGTTCGATTCCGCTCGGCGGCAAATGCTATTTGCTTCTTTTTTTATAGCATTTTCAGACTGTTTCAAAGCCGAAAATTGAGAAAATCTGAAAATTTCGAAAAATATAATTTTCGAAAAAAAAATTTTTTTTCGAAAAACTCAATTTTCATGTTTTTTGGGCCTTAATTTTCAGAAAATGCTCATTTTAAGCCAATTTTCCACTCAAAAATATCGATTTTCAGGTGAAAAAGATCACTAAAGCCAAATTTAAGGATGAGCAATTGTCATTTTTGGTCATCTGGGATATCGATCGATCGCTCACTTGGGAACCATTGGAATCATTTTCCGGAGGTCTTCAACATGAAAGAATTCGARATTTCGCAAAGAAAAATCCCCAAAAATGGGCGTATTTGATGAAAAGTAGGCCGAAATTTTTTTTCCCAAAATTTTGAATTTTTCAGAGATCCCAGACAATCTTCGAGAGGCATTGCTCAGCGCAAAAAATGACGCCATGGCTACAATAACCGATGGACCGGATATCGATTTCATCGAGGAGAAGCGCACTGGATTCGAAAATGAACAAGTTGTGGTTAAAGAAGAGCAGGAGGAGCATATTCAGGGGTAAAAAAGCCTAAAAATGGTCTAAAATGACCTAAAAATAGTCAAAAATGACTTAAAAATGGTCCAAAACAGCCGAAAAATAATCAAAAATGGTCCAAAATGACCTAAAAATGGTCCAAAATGACCTAAAAATGGTCCAAAATAGCCGAAAAATGATCAAAAATGACTTAAAAATGGTCCAAAATTGCCGAAAAATGATCAAAAATGGCCCAAAAATGGTCCAAAATGACATAAAAATGGTCCAAAACAGCCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>424 197 123 103 55 30 23 16 15 7 7</canonical_bands>
                <polymorphic_bands>424 197 123 103 62 30 23 16 15 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>305 227 220 199 19 16 14</canonical_bands>
                <polymorphic_bands>419 305 227 19 16 14</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>352 180 88 72 55 52 28 23 23 20 17 16 15 15 15 15 7 7</canonical_bands>
                <polymorphic_bands>352 180 88 72 62 52 28 23 23 20 17 16 15 15 15 15 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAAAATATCGATTTTCAGGT</pcr_primer_p1>
		<pcr_primer_p2>TCTGGGATCTCTGAAAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCAAAAATATCGATTTTCAGGTGAAAAAGATCACTAAAGCCAAATTTAAGGATGAGCAATTGTCATTTTTGGTCATCTGGGATATCGATCGATCGCTCACTTGGGAACCATTGGAATCATTTTCCGGAGGTCTTCAACATGAAAGAATTCGAAATTTCGCAAAGAAAAATCCCCAAAAATGGGCGTATTTGATGAAAAGTAGGCCGAAATTTTTTTTCCCAAAATTTTGAATTTTTCAGAGATCCCAGA</canonical_amplicon>
		<polymorphic_amplicon>TCAAAAATATCGATTTTCAGGTGAAAAAGATCACTAAAGCCAAATTTAAGGATGAGCAATTGTCATTTTTGGTCATCTGGGATATCGATCGATCGCTCACTTGGGAACCATTGGAATCATTTTCCGGAGGTCTTCAACATGAAAGAATTCGARATTTCGCAAAGAAAAATCCCCAAAAATGGGCGTATTTGATGAAAAGTAGGCCGAAATTTTTTTTCCCAAAATTTTGAATTTTTCAGAGATCCCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20793</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>48487</contig_pos>
        <strand>+</strand>
        <context>GARATTTCGC[A/G]AAGAAAAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGGAATCATTTTCCGGAGGTCTTCAACATGAAAGAATTCGAAATTTCGC</left_flank>
        <right_flank>AAGAAAAATCCCCAAAAATGGGCGTATTTGATGAAAAGTAGGCCGAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCGTTCGAATTCGTCGTACCCCCCACTACGAATTCCCGGAAAACCGCGGAAAATCGATTTTCCAGTGTTTTTGAGCGATTTTCCAAAAAATGCCCGAGTGGCTCAGTGGGATTTTCGATAGCAATCTGAAGACCCGAGTTCGATTCCGCTCGGCGGCAAATGCTATTTGCTTCTTTTTTTATAGCATTTTCAGACTGTTTCAAAGCCGAAAATTGAGAAAATCTGAAAATTTCGAAAAATATAATTTTCGAAAAAAAAATTTTTTTTCGAAAAACTCAATTTTCATGTTTTTTGGGCCTTAATTTTCAGAAAATGCTCATTTTAAGCCAATTTTCCACTCAAAAATATCGATTTTCAGGTGAAAAAGATCACTAAAGCCAAATTTAAGGATGAGCAATTGTCATTTTTGGTCATCTGGGATATCGATCGATCGCTCACTTGGGAACCATTGGAATCATTTTCCGGAGGTCTTCAACATGAAAGAATTCGAAATTTCGCAAAGAAAAATCCCCAAAAATGGGCGTATTTGATGAAAAGTAGGCCGAAATTTTTTTTCCCAAAATTTTGAATTTTTCAGAGATCCCAGACAATCTTCGAGAGGCATTGCTCAGCGCAAAAAATGACGCCATGGCTACAATAACCGATGGACCGGATATCGATTTCATCGAGGAGAAGCGCACTGGATTCGAAAATGAACAAGTTGTGGTTAAAGAAGAGCAGGAGGAGCATATTCAGGGGTAAAAAAGCCTAAAAATGGTCTAAAATGACCTAAAAATAGTCAAAAATGACTTAAAAATGGTCCAAAACAGCCGAAAAATAATCAAAAATGGTCCAAAATGACCTAAAAATGGTCCAAAATGACCTAAAAATGGTCCAAAATAGCCGAAAAATGATCAAAAATGACTTAAAAATGGTCCAAAATTGCCGAAAAATGATCAAAAATGGCCCAAAAATGGTCCAAAATGACATAAAAATGGTCCAAAACAGCCGAAAAATGGT</canonical>
            <polymorphic>AGCGTTCGAATTCGTCGTACCCCCCACTACGAATTCCCGGAAAACCGCGGAAAATCGATTTTCCAGTGTTTTTGAGCGATTTTCCAAAAAATGCCCGAGTGGCTCAGTGGGATTTTCGATAGCAATCTGAAGACCCGAGTTCGATTCCGCTCGGCGGCAAATGCTATTTGCTTCTTTTTTTATAGCATTTTCAGACTGTTTCAAAGCCGAAAATTGAGAAAATCTGAAAATTTCGAAAAATATAATTTTCGAAAAAAAAATTTTTTTTCGAAAAACTCAATTTTCATGTTTTTTGGGCCTTAATTTTCAGAAAATGCTCATTTTAAGCCAATTTTCCACTCAAAAATATCGATTTTCAGGTGAAAAAGATCACTAAAGCCAAATTTAAGGATGAGCAATTGTCATTTTTGGTCATCTGGGATATCGATCGATCGCTCACTTGGGAACCATTGGAATCATTTTCCGGAGGTCTTCAACATGAAAGAATTCGAAATTTCGCRAAGAAAAATCCCCAAAAATGGGCGTATTTGATGAAAAGTAGGCCGAAATTTTTTTTCCCAAAATTTTGAATTTTTCAGAGATCCCAGACAATCTTCGAGAGGCATTGCTCAGCGCAAAAAATGACGCCATGGCTACAATAACCGATGGACCGGATATCGATTTCATCGAGGAGAAGCGCACTGGATTCGAAAATGAACAAGTTGTGGTTAAAGAAGAGCAGGAGGAGCATATTCAGGGGTAAAAAAGCCTAAAAATGGTCTAAAATGACCTAAAAATAGTCAAAAATGACTTAAAAATGGTCCAAAACAGCCGAAAAATAATCAAAAATGGTCCAAAATGACCTAAAAATGGTCCAAAATGACCTAAAAATGGTCCAAAATAGCCGAAAAATGATCAAAAATGACTTAAAAATGGTCCAAAATTGCCGAAAAATGATCAAAAATGGCCCAAAAATGGTCCAAAATGACATAAAAATGGTCCAAAACAGCCGAAAAATGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAAATATCGATTTTCAGGT</pcr_primer_p1>
		<pcr_primer_p2>TCTGGGATCTCTGAAAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCAAAAATATCGATTTTCAGGTGAAAAAGATCACTAAAGCCAAATTTAAGGATGAGCAATTGTCATTTTTGGTCATCTGGGATATCGATCGATCGCTCACTTGGGAACCATTGGAATCATTTTCCGGAGGTCTTCAACATGAAAGAATTCGAAATTTCGCAAAGAAAAATCCCCAAAAATGGGCGTATTTGATGAAAAGTAGGCCGAAATTTTTTTTCCCAAAATTTTGAATTTTTCAGAGATCCCAGA</canonical_amplicon>
		<polymorphic_amplicon>TCAAAAATATCGATTTTCAGGTGAAAAAGATCACTAAAGCCAAATTTAAGGATGAGCAATTGTCATTTTTGGTCATCTGGGATATCGATCGATCGCTCACTTGGGAACCATTGGAATCATTTTCCGGAGGTCTTCAACATGAAAGAATTCGAAATTTCGCRAAGAAAAATCCCCAAAAATGGGCGTATTTGATGAAAAGTAGGCCGAAATTTTTTTTCCCAAAATTTTGAATTTTTCAGAGATCCCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20794</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>60160</contig_pos>
        <strand>+</strand>
        <context>GATTGCTTTT[G/T]CKATTTTTWC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGATTTTTATCAAAAACTGCCCCAAAATCCCCCAAAAACGATTGCTTTT</left_flank>
        <right_flank>CTATTTTTTCGAAATTCCGGGGTCATCAAGTTTGCTCCATTGAAAAAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTAGCTGTTTTCAAAATACATCGAAAAATCGATAAAATTTGAAAAATTTTGAAATTTCGAAAAAGAATTTTTTTTGGCTGAAAATCGACTTTTTTCAGACTATTTTTCTTGATAAAGTTGGCCGAATTTGTCTGAAAATCGATTTTAAGACTGCCAAAATCAAAAAAAATCGATAATTTCTGAGAAAAAATTTCGAAAAAATTCCAAAAAAAAATTTTTTTTTGGCTGAAAATCAATTTTTCAGACTAATTTCTGCTGGAAATTCGAATTTTCCAATTTTCGAGACGCTGAAATTCAAATTTCAGTCAGAAAATCGATAAATTTTGAGAAAAAAAATCGGGAAAAAAATTTCAAAAAAAAATTTTTTTCCAATTTTCTTTTCTTTTTTTCCAATTTTCTTTTCTTCAGTAAAATCCATGTTTCTCACTCTAAAATCACTCAAAAATATCGATTTTTATCAAAAACTGCCCCAAAATCCCCCAAAAACGATTGCTTTTTCTATTTTTTCGAAATTCCGGGGTCATCAAGTTTGCTCCATTGAAAAAAGTAGGAAAATCACTTTTTGGGGGTTTTTGAGCTCAAAAAATCGATTAAAATTATTGCAAAAACAAAAAATATTGATTTTTCAGTCAAAACTTGCAATTTCAGCAAAAAAAAGTTCAAAAAAAAATTTTTTTTCCAAATTTTTTTTTTCAAATTTCCAAAAAATTCATGTTTCTCGCTGAAAAGAAACTCAGTTTTATCGATTTTTCGCCAAAAATCACCCCAAAAACCCCCTAAAAGTCATTGATTTTTCGGAAAATCGATAATTTATCGATTTTTTACATTTTTTTTCAAAATTTTTTTCAAAGCGATTTTTAGGCATTTTTAGGCTTCTAAAAAGCAATTTTCTCAGCAAAAATCTATCGATTTTCGTTCCAGAAGTACCAGGAGGCTGAGACGGAGTTCGAGAAGTTCAAAAAGCCAAAAACCGATGAGAACCTGTCCCAGAACACCTA</canonical>
            <polymorphic>TTCTAGCTGTTTTCAAAATACATCGAAAAATCGATAAAATTTGAAAAATTTTGAAATTTCGAAAAAGAATTTTTTTTGGCTGAAAATCGACTTTTTTCAGACTATTTTTCTTGATAAAGTTGGCCGAATTTGTCTGAAAATCGATTTTAAGACTGCCAAAATCAAAAAAAATCGATAATTTCTGAGAAAAAATTTCGAAAAAATTCCAAAAAAAAATTTTTTTTTGGCTGAAAATCAATTTTTCAGACTAATTTCTGCTGGAAATTCGAATTTTCCAATTTTCGAGACGCTGAAATTCAAATTTCAGTCAGAAAATCGATAAATTTTGAGAAAAAAAATCGGGAAAAAAATTTCAAAAAAAAATTTTTTTCCAATTTTCTTTTCTTTTTTTCCAATTTTCTTTTCTTCAGTAAAATCCATGTTTCTCACTCTAAAATCACTCAAAAATATCGATTTTTATCAAAAACTGCCCCAAAATCCCCCAAAAACGATTGCTTTTKCTATTTTTTCGAAATTCCGGGGTCATCAAGTTTGCTCCATTGAAAAAAGTAGGAAAATCACTTTTTGGGGGTTTTTGAGCTCAAAAAATCGATTAAAATTATTGCAAAAACAAAAAATATTGATTTTTCAGTCAAAACTTGCAATTTCAGCAAAAAAAAGTTCAAAAAAAAATTTTTTTTCCAAATTTTTTTTTTCAAATTTCCAAAAAATTCATGTTTCTCGCTGAAAAGAAACTCAGTTTTATCGATTTTTCGCCAAAAATCACCCCAAAAACCCCCTAAAAGTCATTGATTTTTCGGAAAATCGATAATTTATCGATTTTTTACATTTTTTTTCAAAATTTTTTTCAAAGCGATTTTTAGGCATTTTTAGGCTTCTAAAAAGCAATTTTCTCAGCAAAAATCTATCGATTTTCGTTCCAGAAGTACCAGGAGGCTGAGACGGAGTTCGAGAAGTTCAAAAAGCCAAAAACCGATGAGAACCTGTCCCAGAACACCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTCTTCAGTAAAATCCATGT</pcr_primer_p1>
		<pcr_primer_p2>CTGAAATTGCAAGTTTTGACT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTTTTCTTCAGTAAAATCCATGTTTCTCACTCTAAAATCACTCAAAAATATCGATTTTTATCAAAAACTGCCCCAAAATCCCCCAAAAACGATTGCTTTTTCTATTTTTTCGAAATTCCGGGGTCATCAAGTTTGCTCCATTGAAAAAAGTAGGAAAATCACTTTTTGGGGGTTTTTGAGCTCAAAAAATCGATTAAAATTATTGCAAAAACAAAAAATATTGATTTTTCAGTCAAAACTTGCAATTTCAG</canonical_amplicon>
		<polymorphic_amplicon>CTTTTCTTCAGTAAAATCCATGTTTCTCACTCTAAAATCACTCAAAAATATCGATTTTTATCAAAAACTGCCCCAAAATCCCCCAAAAACGATTGCTTTTKCTATTTTTTCGAAATTCCGGGGTCATCAAGTTTGCTCCATTGAAAAAAGTAGGAAAATCACTTTTTGGGGGTTTTTGAGCTCAAAAAATCGATTAAAATTATTGCAAAAACAAAAAATATTGATTTTTCAGTCAAAACTTGCAATTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20795</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>60162</contig_pos>
        <strand>+</strand>
        <context>TTGCTTTTKC[G/T]ATTTTTWCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATTTTTATCAAAAACTGCCCCAAAATCCCCCAAAAACGATTGCTTTTTC</left_flank>
        <right_flank>ATTTTTTCGAAATTCCGGGGTCATCAAGTTTGCTCCATTGAAAAAAGTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGCTGTTTTCAAAATACATCGAAAAATCGATAAAATTTGAAAAATTTTGAAATTTCGAAAAAGAATTTTTTTTGGCTGAAAATCGACTTTTTTCAGACTATTTTTCTTGATAAAGTTGGCCGAATTTGTCTGAAAATCGATTTTAAGACTGCCAAAATCAAAAAAAATCGATAATTTCTGAGAAAAAATTTCGAAAAAATTCCAAAAAAAAATTTTTTTTTGGCTGAAAATCAATTTTTCAGACTAATTTCTGCTGGAAATTCGAATTTTCCAATTTTCGAGACGCTGAAATTCAAATTTCAGTCAGAAAATCGATAAATTTTGAGAAAAAAAATCGGGAAAAAAATTTCAAAAAAAAATTTTTTTCCAATTTTCTTTTCTTTTTTTCCAATTTTCTTTTCTTCAGTAAAATCCATGTTTCTCACTCTAAAATCACTCAAAAATATCGATTTTTATCAAAAACTGCCCCAAAATCCCCCAAAAACGATTGCTTTTTCTATTTTTTCGAAATTCCGGGGTCATCAAGTTTGCTCCATTGAAAAAAGTAGGAAAATCACTTTTTGGGGGTTTTTGAGCTCAAAAAATCGATTAAAATTATTGCAAAAACAAAAAATATTGATTTTTCAGTCAAAACTTGCAATTTCAGCAAAAAAAAGTTCAAAAAAAAATTTTTTTTCCAAATTTTTTTTTTCAAATTTCCAAAAAATTCATGTTTCTCGCTGAAAAGAAACTCAGTTTTATCGATTTTTCGCCAAAAATCACCCCAAAAACCCCCTAAAAGTCATTGATTTTTCGGAAAATCGATAATTTATCGATTTTTTACATTTTTTTTCAAAATTTTTTTCAAAGCGATTTTTAGGCATTTTTAGGCTTCTAAAAAGCAATTTTCTCAGCAAAAATCTATCGATTTTCGTTCCAGAAGTACCAGGAGGCTGAGACGGAGTTCGAGAAGTTCAAAAAGCCAAAAACCGATGAGAACCTGTCCCAGAACACCTATG</canonical>
            <polymorphic>CTAGCTGTTTTCAAAATACATCGAAAAATCGATAAAATTTGAAAAATTTTGAAATTTCGAAAAAGAATTTTTTTTGGCTGAAAATCGACTTTTTTCAGACTATTTTTCTTGATAAAGTTGGCCGAATTTGTCTGAAAATCGATTTTAAGACTGCCAAAATCAAAAAAAATCGATAATTTCTGAGAAAAAATTTCGAAAAAATTCCAAAAAAAAATTTTTTTTTGGCTGAAAATCAATTTTTCAGACTAATTTCTGCTGGAAATTCGAATTTTCCAATTTTCGAGACGCTGAAATTCAAATTTCAGTCAGAAAATCGATAAATTTTGAGAAAAAAAATCGGGAAAAAAATTTCAAAAAAAAATTTTTTTCCAATTTTCTTTTCTTTTTTTCCAATTTTCTTTTCTTCAGTAAAATCCATGTTTCTCACTCTAAAATCACTCAAAAATATCGATTTTTATCAAAAACTGCCCCAAAATCCCCCAAAAACGATTGCTTTTTCKATTTTTTCGAAATTCCGGGGTCATCAAGTTTGCTCCATTGAAAAAAGTAGGAAAATCACTTTTTGGGGGTTTTTGAGCTCAAAAAATCGATTAAAATTATTGCAAAAACAAAAAATATTGATTTTTCAGTCAAAACTTGCAATTTCAGCAAAAAAAAGTTCAAAAAAAAATTTTTTTTCCAAATTTTTTTTTTCAAATTTCCAAAAAATTCATGTTTCTCGCTGAAAAGAAACTCAGTTTTATCGATTTTTCGCCAAAAATCACCCCAAAAACCCCCTAAAAGTCATTGATTTTTCGGAAAATCGATAATTTATCGATTTTTTACATTTTTTTTCAAAATTTTTTTCAAAGCGATTTTTAGGCATTTTTAGGCTTCTAAAAAGCAATTTTCTCAGCAAAAATCTATCGATTTTCGTTCCAGAAGTACCAGGAGGCTGAGACGGAGTTCGAGAAGTTCAAAAAGCCAAAAACCGATGAGAACCTGTCCCAGAACACCTATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTCTTCAGTAAAATCCATGT</pcr_primer_p1>
		<pcr_primer_p2>CTGAAATTGCAAGTTTTGACT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTTTTCTTCAGTAAAATCCATGTTTCTCACTCTAAAATCACTCAAAAATATCGATTTTTATCAAAAACTGCCCCAAAATCCCCCAAAAACGATTGCTTTTTCTATTTTTTCGAAATTCCGGGGTCATCAAGTTTGCTCCATTGAAAAAAGTAGGAAAATCACTTTTTGGGGGTTTTTGAGCTCAAAAAATCGATTAAAATTATTGCAAAAACAAAAAATATTGATTTTTCAGTCAAAACTTGCAATTTCAG</canonical_amplicon>
		<polymorphic_amplicon>CTTTTCTTCAGTAAAATCCATGTTTCTCACTCTAAAATCACTCAAAAATATCGATTTTTATCAAAAACTGCCCCAAAATCCCCCAAAAACGATTGCTTTTTCKATTTTTTCGAAATTCCGGGGTCATCAAGTTTGCTCCATTGAAAAAAGTAGGAAAATCACTTTTTGGGGGTTTTTGAGCTCAAAAAATCGATTAAAATTATTGCAAAAACAAAAAATATTGATTTTTCAGTCAAAACTTGCAATTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20796</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>60169</contig_pos>
        <strand>+</strand>
        <context>TKCKATTTTT[A/T]CGAAATTCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCAAAAACTGCCCCAAAATCCCCCAAAAACGATTGCTTTTTCTATTTTT</left_flank>
        <right_flank>CGAAATTCCGGGGTCATCAAGTTTGCTCCATTGAAAAAAGTAGGAAAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCAAAATACATCGAAAAATCGATAAAATTTGAAAAATTTTGAAATTTCGAAAAAGAATTTTTTTTGGCTGAAAATCGACTTTTTTCAGACTATTTTTCTTGATAAAGTTGGCCGAATTTGTCTGAAAATCGATTTTAAGACTGCCAAAATCAAAAAAAATCGATAATTTCTGAGAAAAAATTTCGAAAAAATTCCAAAAAAAAATTTTTTTTTGGCTGAAAATCAATTTTTCAGACTAATTTCTGCTGGAAATTCGAATTTTCCAATTTTCGAGACGCTGAAATTCAAATTTCAGTCAGAAAATCGATAAATTTTGAGAAAAAAAATCGGGAAAAAAATTTCAAAAAAAAATTTTTTTCCAATTTTCTTTTCTTTTTTTCCAATTTTCTTTTCTTCAGTAAAATCCATGTTTCTCACTCTAAAATCACTCAAAAATATCGATTTTTATCAAAAACTGCCCCAAAATCCCCCAAAAACGATTGCTTTTTCTATTTTTTCGAAATTCCGGGGTCATCAAGTTTGCTCCATTGAAAAAAGTAGGAAAATCACTTTTTGGGGGTTTTTGAGCTCAAAAAATCGATTAAAATTATTGCAAAAACAAAAAATATTGATTTTTCAGTCAAAACTTGCAATTTCAGCAAAAAAAAGTTCAAAAAAAAATTTTTTTTCCAAATTTTTTTTTTCAAATTTCCAAAAAATTCATGTTTCTCGCTGAAAAGAAACTCAGTTTTATCGATTTTTCGCCAAAAATCACCCCAAAAACCCCCTAAAAGTCATTGATTTTTCGGAAAATCGATAATTTATCGATTTTTTACATTTTTTTTCAAAATTTTTTTCAAAGCGATTTTTAGGCATTTTTAGGCTTCTAAAAAGCAATTTTCTCAGCAAAAATCTATCGATTTTCGTTCCAGAAGTACCAGGAGGCTGAGACGGAGTTCGAGAAGTTCAAAAAGCCAAAAACCGATGAGAACCTGTCCCAGAACACCTATGCCTCGCG</canonical>
            <polymorphic>TTTTCAAAATACATCGAAAAATCGATAAAATTTGAAAAATTTTGAAATTTCGAAAAAGAATTTTTTTTGGCTGAAAATCGACTTTTTTCAGACTATTTTTCTTGATAAAGTTGGCCGAATTTGTCTGAAAATCGATTTTAAGACTGCCAAAATCAAAAAAAATCGATAATTTCTGAGAAAAAATTTCGAAAAAATTCCAAAAAAAAATTTTTTTTTGGCTGAAAATCAATTTTTCAGACTAATTTCTGCTGGAAATTCGAATTTTCCAATTTTCGAGACGCTGAAATTCAAATTTCAGTCAGAAAATCGATAAATTTTGAGAAAAAAAATCGGGAAAAAAATTTCAAAAAAAAATTTTTTTCCAATTTTCTTTTCTTTTTTTCCAATTTTCTTTTCTTCAGTAAAATCCATGTTTCTCACTCTAAAATCACTCAAAAATATCGATTTTTATCAAAAACTGCCCCAAAATCCCCCAAAAACGATTGCTTTTTCTATTTTTWCGAAATTCCGGGGTCATCAAGTTTGCTCCATTGAAAAAAGTAGGAAAATCACTTTTTGGGGGTTTTTGAGCTCAAAAAATCGATTAAAATTATTGCAAAAACAAAAAATATTGATTTTTCAGTCAAAACTTGCAATTTCAGCAAAAAAAAGTTCAAAAAAAAATTTTTTTTCCAAATTTTTTTTTTCAAATTTCCAAAAAATTCATGTTTCTCGCTGAAAAGAAACTCAGTTTTATCGATTTTTCGCCAAAAATCACCCCAAAAACCCCCTAAAAGTCATTGATTTTTCGGAAAATCGATAATTTATCGATTTTTTACATTTTTTTTCAAAATTTTTTTCAAAGCGATTTTTAGGCATTTTTAGGCTTCTAAAAAGCAATTTTCTCAGCAAAAATCTATCGATTTTCGTTCCAGAAGTACCAGGAGGCTGAGACGGAGTTCGAGAAGTTCAAAAAGCCAAAAACCGATGAGAACCTGTCCCAGAACACCTATGCCTCGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>500 243 136 71 50</canonical_bands>
                <polymorphic_bands>743 136 71 50</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>156 134 92 80 71 60 59 59 54 41 34 31 28 28 23 16 15 11 8</canonical_bands>
                <polymorphic_bands>156 139 134 92 71 60 59 54 41 34 31 28 28 23 16 15 11 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTTCTTCAGTAAAATCCATGT</pcr_primer_p1>
		<pcr_primer_p2>CTGAAATTGCAAGTTTTGACT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTTTTCTTCAGTAAAATCCATGTTTCTCACTCTAAAATCACTCAAAAATATCGATTTTTATCAAAAACTGCCCCAAAATCCCCCAAAAACGATTGCTTTTTCTATTTTTTCGAAATTCCGGGGTCATCAAGTTTGCTCCATTGAAAAAAGTAGGAAAATCACTTTTTGGGGGTTTTTGAGCTCAAAAAATCGATTAAAATTATTGCAAAAACAAAAAATATTGATTTTTCAGTCAAAACTTGCAATTTCAG</canonical_amplicon>
		<polymorphic_amplicon>CTTTTCTTCAGTAAAATCCATGTTTCTCACTCTAAAATCACTCAAAAATATCGATTTTTATCAAAAACTGCCCCAAAATCCCCCAAAAACGATTGCTTTTTCTATTTTTWCGAAATTCCGGGGTCATCAAGTTTGCTCCATTGAAAAAAGTAGGAAAATCACTTTTTGGGGGTTTTTGAGCTCAAAAAATCGATTAAAATTATTGCAAAAACAAAAAATATTGATTTTTCAGTCAAAACTTGCAATTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20797</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>60220</contig_pos>
        <strand>+</strand>
        <context>TAGGAAAATC[A/G]CTTTTTGGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAAATTCCGGGGTCATCAAGTTTGCTCCATTGAAAAAAGTAGGAAAATC</left_flank>
        <right_flank>CTTTTTGGGGGTTTTTGAGCTCAAAAAATCGATTAAAATTATTGCAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAAGAATTTTTTTTGGCTGAAAATCGACTTTTTTCAGACTATTTTTCTTGATAAAGTTGGCCGAATTTGTCTGAAAATCGATTTTAAGACTGCCAAAATCAAAAAAAATCGATAATTTCTGAGAAAAAATTTCGAAAAAATTCCAAAAAAAAATTTTTTTTTGGCTGAAAATCAATTTTTCAGACTAATTTCTGCTGGAAATTCGAATTTTCCAATTTTCGAGACGCTGAAATTCAAATTTCAGTCAGAAAATCGATAAATTTTGAGAAAAAAAATCGGGAAAAAAATTTCAAAAAAAAATTTTTTTCCAATTTTCTTTTCTTTTTTTCCAATTTTCTTTTCTTCAGTAAAATCCATGTTTCTCACTCTAAAATCACTCAAAAATATCGATTTTTATCAAAAACTGCCCCAAAATCCCCCAAAAACGATTGCTTTTTCTATTTTTTCGAAATTCCGGGGTCATCAAGTTTGCTCCATTGAAAAAAGTAGGAAAATCACTTTTTGGGGGTTTTTGAGCTCAAAAAATCGATTAAAATTATTGCAAAAACAAAAAATATTGATTTTTCAGTCAAAACTTGCAATTTCAGCAAAAAAAAGTTCAAAAAAAAATTTTTTTTCCAAATTTTTTTTTTCAAATTTCCAAAAAATTCATGTTTCTCGCTGAAAAGAAACTCAGTTTTATCGATTTTTCGCCAAAAATCACCCCAAAAACCCCCTAAAAGTCATTGATTTTTCGGAAAATCGATAATTTATCGATTTTTTACATTTTTTTTCAAAATTTTTTTCAAAGCGATTTTTAGGCATTTTTAGGCTTCTAAAAAGCAATTTTCTCAGCAAAAATCTATCGATTTTCGTTCCAGAAGTACCAGGAGGCTGAGACGGAGTTCGAGAAGTTCAAAAAGCCAAAAACCGATGAGAACCTGTCCCAGAACACCTATGCCTCGCGGAAATCCCGAGCCAAAACCGCTTTTGAGCTGGCGAAATTGAGATTTGAAGC</canonical>
            <polymorphic>GAAAAAGAATTTTTTTTGGCTGAAAATCGACTTTTTTCAGACTATTTTTCTTGATAAAGTTGGCCGAATTTGTCTGAAAATCGATTTTAAGACTGCCAAAATCAAAAAAAATCGATAATTTCTGAGAAAAAATTTCGAAAAAATTCCAAAAAAAAATTTTTTTTTGGCTGAAAATCAATTTTTCAGACTAATTTCTGCTGGAAATTCGAATTTTCCAATTTTCGAGACGCTGAAATTCAAATTTCAGTCAGAAAATCGATAAATTTTGAGAAAAAAAATCGGGAAAAAAATTTCAAAAAAAAATTTTTTTCCAATTTTCTTTTCTTTTTTTCCAATTTTCTTTTCTTCAGTAAAATCCATGTTTCTCACTCTAAAATCACTCAAAAATATCGATTTTTATCAAAAACTGCCCCAAAATCCCCCAAAAACGATTGCTTTTTCTATTTTTTCGAAATTCCGGGGTCATCAAGTTTGCTCCATTGAAAAAAGTAGGAAAATCRCTTTTTGGGGGTTTTTGAGCTCAAAAAATCGATTAAAATTATTGCAAAAACAAAAAATATTGATTTTTCAGTCAAAACTTGCAATTTCAGCAAAAAAAAGTTCAAAAAAAAATTTTTTTTCCAAATTTTTTTTTTCAAATTTCCAAAAAATTCATGTTTCTCGCTGAAAAGAAACTCAGTTTTATCGATTTTTCGCCAAAAATCACCCCAAAAACCCCCTAAAAGTCATTGATTTTTCGGAAAATCGATAATTTATCGATTTTTTACATTTTTTTTCAAAATTTTTTTCAAAGCGATTTTTAGGCATTTTTAGGCTTCTAAAAAGCAATTTTCTCAGCAAAAATCTATCGATTTTCGTTCCAGAAGTACCAGGAGGCTGAGACGGAGTTCGAGAAGTTCAAAAAGCCAAAAACCGATGAGAACCTGTCCCAGAACACCTATGCCTCGCGGAAATCCCGAGCCAAAACCGCTTTTGAGCTGGCGAAATTGAGATTTGAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>368 231 205 121 64 11</canonical_bands>
                <polymorphic_bands>368 326 231 64 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTTCTTCAGTAAAATCCATGT</pcr_primer_p1>
		<pcr_primer_p2>CTGAAATTGCAAGTTTTGACT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTTTTCTTCAGTAAAATCCATGTTTCTCACTCTAAAATCACTCAAAAATATCGATTTTTATCAAAAACTGCCCCAAAATCCCCCAAAAACGATTGCTTTTTCTATTTTTTCGAAATTCCGGGGTCATCAAGTTTGCTCCATTGAAAAAAGTAGGAAAATCACTTTTTGGGGGTTTTTGAGCTCAAAAAATCGATTAAAATTATTGCAAAAACAAAAAATATTGATTTTTCAGTCAAAACTTGCAATTTCAG</canonical_amplicon>
		<polymorphic_amplicon>CTTTTCTTCAGTAAAATCCATGTTTCTCACTCTAAAATCACTCAAAAATATCGATTTTTATCAAAAACTGCCCCAAAATCCCCCAAAAACGATTGCTTTTTCTATTTTTTCGAAATTCCGGGGTCATCAAGTTTGCTCCATTGAAAAAAGTAGGAAAATCRCTTTTTGGGGGTTTTTGAGCTCAAAAAATCGATTAAAATTATTGCAAAAACAAAAAATATTGATTTTTCAGTCAAAACTTGCAATTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20798</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>95722</contig_pos>
        <strand>+</strand>
        <context>CGAAAAGTCC[G/T]GTTTTTTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGCGTCGCGGCTCGCGGAATTTCGGTTTTCATTTTTTCATCGAAAAGTCC</left_flank>
        <right_flank>GTTTTTTTCGGAATTTTTCAGTCAAATTCAGCATTTGACCTCATATTTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTATGGGAAATTCAATGGAAGCCTCCAAAATCTTGAAAAAAAAATTTCAAGCCCATTTTTTGGGGTTTTCCTGGAATAAAGAAGGAAAAGGAGGAAAAGTGGGCGGAGCTTGGCATCCAGCCAAGTCTTTCTCTGTGCTCTCTTCTCCCTTCGTCACGTGTCTTCTTCTGTCTGAGTATCAAACGCATTTGGCTTCGTACTTCTTCTATTCTGGCCATACACATGTCATTTGTATACGTTTCGGAGTGTGCGTGCGCGCCTTTTTAGGCTTTTTTAGACCAAAATTTCGGGTTTTAGGCTAAAAATATTGTTTTTTGGGGGTTTTTTTTCAGCTTTAAACCTCATTTTTCAGCCAGAAAACCATATTTTTAGCTGGTAAACTCCTTTTTCTGCATTTTCCGTCTCAGAAATTGAAGCAAATCCAGTGCGGTCAGCGGCGACGCGGACGCGTCGCGGCTCGCGGAATTTCGGTTTTCATTTTTTCATCGAAAAGTCCTGTTTTTTTCGGAATTTTTCAGTCAAATTCAGCATTTGACCTCATATTTGAGCTAAAAATCAATCAATTTTTTCACTTTTTTTTCAATTCAGAAATTCTGGAATTTTGATTTTCAGCCAGTTTTTTCTGGAAAATTCTGGATTTTTGGCTGAAAATTCTGATTTTTAGGCCAATTTCGCAATCCCCTCTCACCACCTGACACCACACGCGACGCGACCGCGCCGCTTGCCCCGCGCGCCCGCCAATTTCGAAATTAGCGATGCGCGCGCGTTGCGGTCGCGTAGCGTGTCCGGCCTTAGTTTTTCAAAAATCGGTCATTTTTACCCGATGTCGTCGTGATGAGCGGCGGTTTTTTGGGGCTCTTTTTTAAATATTTTTTTTCAGGTTTAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAATTCCAGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTT</canonical>
            <polymorphic>TTTTTATGGGAAATTCAATGGAAGCCTCCAAAATCTTGAAAAAAAAATTTCAAGCCCATTTTTTGGGGTTTTCCTGGAATAAAGAAGGAAAAGGAGGAAAAGTGGGCGGAGCTTGGCATCCAGCCAAGTCTTTCTCTGTGCTCTCTTCTCCCTTCGTCACGTGTCTTCTTCTGTCTGAGTATCAAACGCATTTGGCTTCGTACTTCTTCTATTCTGGCCATACACATGTCATTTGTATACGTTTCGGAGTGTGCGTGCGCGCCTTTTTAGGCTTTTTTAGACCAAAATTTCGGGTTTTAGGCTAAAAATATTGTTTTTTGGGGGTTTTTTTTCAGCTTTAAACCTCATTTTTCAGCCAGAAAACCATATTTTTAGCTGGTAAACTCCTTTTTCTGCATTTTCCGTCTCAGAAATTGAAGCAAATCCAGTGCGGTCAGCGGCGACGCGGACGCGTCGCGGCTCGCGGAATTTCGGTTTTCATTTTTTCATCGAAAAGTCCKGTTTTTTTCGGAATTTTTCAGTCAAATTCAGCATTTGACCTCATATTTGAGCTAAAAATCAATCAATTTTTTCACTTTTTTTTCAATTCAGAAATTCTGGAATTTTGATTTTCAGCCAGTTTTTTCTGGAAAATTCTGGATTTTTGGCTGAAAATTCTGATTTTTAGGCCAATTTCGCAATCCCCTCTCACCACCTGACACCACACGCGACGCGACCGCGCCGCTTGCCCCGCGCGCCCGCCAATTTCGAAATTAGCGATGCGCGCGCGTTGCGGTCGCGTAGCGTGTCCGGCCTTAGTTTTTCAAAAATCGGTCATTTTTACCCGATGTCGTCGTGATGAGCGGCGGTTTTTTGGGGCTCTTTTTTAAATATTTTTTTTCAGGTTTAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAATTCCAGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTGAAGCAAATCCAGTG</pcr_primer_p1>
		<pcr_primer_p2>AAATTGGCCTAAAAATCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>AAATTGAAGCAAATCCAGTGCGGTCAGCGGCGACGCGGACGCGTCGCGGCTCGCGGAATTTCGGTTTTCATTTTTTCATCGAAAAGTCCTGTTTTTTTCGGAATTTTTCAGTCAAATTCAGCATTTGACCTCATATTTGAGCTAAAAATCAATCAATTTTTTCACTTTTTTTTCAATTCAGAAATTCTGGAATTTTGATTTTCAGCCAGTTTTTTCTGGAAAATTCTGGATTTTTGGCTGAAAATTCTGATTTTTAGGCCAATTT</canonical_amplicon>
		<polymorphic_amplicon>AAATTGAAGCAAATCCAGTGCGGTCAGCGGCGACGCGGACGCGTCGCGGCTCGCGGAATTTCGGTTTTCATTTTTTCATCGAAAAGTCCKGTTTTTTTCGGAATTTTTCAGTCAAATTCAGCATTTGACCTCATATTTGAGCTAAAAATCAATCAATTTTTTCACTTTTTTTTCAATTCAGAAATTCTGGAATTTTGATTTTCAGCCAGTTTTTTCTGGAAAATTCTGGATTTTTGGCTGAAAATTCTGATTTTTAGGCCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20799</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>95759</contig_pos>
        <strand>+</strand>
        <context>TTCAGCATTT[A/G]ACCTCWTATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATCGAAAAGTCCTGTTTTTTTCGGAATTTTTCAGTCAAATTCAGCATTT</left_flank>
        <right_flank>ACCTCATATTTGAGCTAAAAATCAATCAATTTTTTCACTTTTTTTTCAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAAAAAATTTCAAGCCCATTTTTTGGGGTTTTCCTGGAATAAAGAAGGAAAAGGAGGAAAAGTGGGCGGAGCTTGGCATCCAGCCAAGTCTTTCTCTGTGCTCTCTTCTCCCTTCGTCACGTGTCTTCTTCTGTCTGAGTATCAAACGCATTTGGCTTCGTACTTCTTCTATTCTGGCCATACACATGTCATTTGTATACGTTTCGGAGTGTGCGTGCGCGCCTTTTTAGGCTTTTTTAGACCAAAATTTCGGGTTTTAGGCTAAAAATATTGTTTTTTGGGGGTTTTTTTTCAGCTTTAAACCTCATTTTTCAGCCAGAAAACCATATTTTTAGCTGGTAAACTCCTTTTTCTGCATTTTCCGTCTCAGAAATTGAAGCAAATCCAGTGCGGTCAGCGGCGACGCGGACGCGTCGCGGCTCGCGGAATTTCGGTTTTCATTTTTTCATCGAAAAGTCCTGTTTTTTTCGGAATTTTTCAGTCAAATTCAGCATTTGACCTCATATTTGAGCTAAAAATCAATCAATTTTTTCACTTTTTTTTCAATTCAGAAATTCTGGAATTTTGATTTTCAGCCAGTTTTTTCTGGAAAATTCTGGATTTTTGGCTGAAAATTCTGATTTTTAGGCCAATTTCGCAATCCCCTCTCACCACCTGACACCACACGCGACGCGACCGCGCCGCTTGCCCCGCGCGCCCGCCAATTTCGAAATTAGCGATGCGCGCGCGTTGCGGTCGCGTAGCGTGTCCGGCCTTAGTTTTTCAAAAATCGGTCATTTTTACCCGATGTCGTCGTGATGAGCGGCGGTTTTTTGGGGCTCTTTTTTAAATATTTTTTTTCAGGTTTAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAATTCCAGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTAGTCGA</canonical>
            <polymorphic>GAAAAAAAAATTTCAAGCCCATTTTTTGGGGTTTTCCTGGAATAAAGAAGGAAAAGGAGGAAAAGTGGGCGGAGCTTGGCATCCAGCCAAGTCTTTCTCTGTGCTCTCTTCTCCCTTCGTCACGTGTCTTCTTCTGTCTGAGTATCAAACGCATTTGGCTTCGTACTTCTTCTATTCTGGCCATACACATGTCATTTGTATACGTTTCGGAGTGTGCGTGCGCGCCTTTTTAGGCTTTTTTAGACCAAAATTTCGGGTTTTAGGCTAAAAATATTGTTTTTTGGGGGTTTTTTTTCAGCTTTAAACCTCATTTTTCAGCCAGAAAACCATATTTTTAGCTGGTAAACTCCTTTTTCTGCATTTTCCGTCTCAGAAATTGAAGCAAATCCAGTGCGGTCAGCGGCGACGCGGACGCGTCGCGGCTCGCGGAATTTCGGTTTTCATTTTTTCATCGAAAAGTCCTGTTTTTTTCGGAATTTTTCAGTCAAATTCAGCATTTRACCTCATATTTGAGCTAAAAATCAATCAATTTTTTCACTTTTTTTTCAATTCAGAAATTCTGGAATTTTGATTTTCAGCCAGTTTTTTCTGGAAAATTCTGGATTTTTGGCTGAAAATTCTGATTTTTAGGCCAATTTCGCAATCCCCTCTCACCACCTGACACCACACGCGACGCGACCGCGCCGCTTGCCCCGCGCGCCCGCCAATTTCGAAATTAGCGATGCGCGCGCGTTGCGGTCGCGTAGCGTGTCCGGCCTTAGTTTTTCAAAAATCGGTCATTTTTACCCGATGTCGTCGTGATGAGCGGCGGTTTTTTGGGGCTCTTTTTTAAATATTTTTTTTCAGGTTTAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAATTCCAGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTAGTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTGAAGCAAATCCAGTG</pcr_primer_p1>
		<pcr_primer_p2>AAATTGGCCTAAAAATCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>AAATTGAAGCAAATCCAGTGCGGTCAGCGGCGACGCGGACGCGTCGCGGCTCGCGGAATTTCGGTTTTCATTTTTTCATCGAAAAGTCCTGTTTTTTTCGGAATTTTTCAGTCAAATTCAGCATTTGACCTCATATTTGAGCTAAAAATCAATCAATTTTTTCACTTTTTTTTCAATTCAGAAATTCTGGAATTTTGATTTTCAGCCAGTTTTTTCTGGAAAATTCTGGATTTTTGGCTGAAAATTCTGATTTTTAGGCCAATTT</canonical_amplicon>
		<polymorphic_amplicon>AAATTGAAGCAAATCCAGTGCGGTCAGCGGCGACGCGGACGCGTCGCGGCTCGCGGAATTTCGGTTTTCATTTTTTCATCGAAAAGTCCTGTTTTTTTCGGAATTTTTCAGTCAAATTCAGCATTTRACCTCATATTTGAGCTAAAAATCAATCAATTTTTTCACTTTTTTTTCAATTCAGAAATTCTGGAATTTTGATTTTCAGCCAGTTTTTTCTGGAAAATTCTGGATTTTTGGCTGAAAATTCTGATTTTTAGGCCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20800</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>95765</contig_pos>
        <strand>+</strand>
        <context>ATTTRACCTC[A/T]TATTTGAGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAGTCCTGTTTTTTTCGGAATTTTTCAGTCAAATTCAGCATTTGACCTC</left_flank>
        <right_flank>TATTTGAGCTAAAAATCAATCAATTTTTTCACTTTTTTTTCAATTCAGAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTTCAAGCCCATTTTTTGGGGTTTTCCTGGAATAAAGAAGGAAAAGGAGGAAAAGTGGGCGGAGCTTGGCATCCAGCCAAGTCTTTCTCTGTGCTCTCTTCTCCCTTCGTCACGTGTCTTCTTCTGTCTGAGTATCAAACGCATTTGGCTTCGTACTTCTTCTATTCTGGCCATACACATGTCATTTGTATACGTTTCGGAGTGTGCGTGCGCGCCTTTTTAGGCTTTTTTAGACCAAAATTTCGGGTTTTAGGCTAAAAATATTGTTTTTTGGGGGTTTTTTTTCAGCTTTAAACCTCATTTTTCAGCCAGAAAACCATATTTTTAGCTGGTAAACTCCTTTTTCTGCATTTTCCGTCTCAGAAATTGAAGCAAATCCAGTGCGGTCAGCGGCGACGCGGACGCGTCGCGGCTCGCGGAATTTCGGTTTTCATTTTTTCATCGAAAAGTCCTGTTTTTTTCGGAATTTTTCAGTCAAATTCAGCATTTGACCTCATATTTGAGCTAAAAATCAATCAATTTTTTCACTTTTTTTTCAATTCAGAAATTCTGGAATTTTGATTTTCAGCCAGTTTTTTCTGGAAAATTCTGGATTTTTGGCTGAAAATTCTGATTTTTAGGCCAATTTCGCAATCCCCTCTCACCACCTGACACCACACGCGACGCGACCGCGCCGCTTGCCCCGCGCGCCCGCCAATTTCGAAATTAGCGATGCGCGCGCGTTGCGGTCGCGTAGCGTGTCCGGCCTTAGTTTTTCAAAAATCGGTCATTTTTACCCGATGTCGTCGTGATGAGCGGCGGTTTTTTGGGGCTCTTTTTTAAATATTTTTTTTCAGGTTTAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAATTCCAGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTAGTCGATTTTGC</canonical>
            <polymorphic>AAAATTTCAAGCCCATTTTTTGGGGTTTTCCTGGAATAAAGAAGGAAAAGGAGGAAAAGTGGGCGGAGCTTGGCATCCAGCCAAGTCTTTCTCTGTGCTCTCTTCTCCCTTCGTCACGTGTCTTCTTCTGTCTGAGTATCAAACGCATTTGGCTTCGTACTTCTTCTATTCTGGCCATACACATGTCATTTGTATACGTTTCGGAGTGTGCGTGCGCGCCTTTTTAGGCTTTTTTAGACCAAAATTTCGGGTTTTAGGCTAAAAATATTGTTTTTTGGGGGTTTTTTTTCAGCTTTAAACCTCATTTTTCAGCCAGAAAACCATATTTTTAGCTGGTAAACTCCTTTTTCTGCATTTTCCGTCTCAGAAATTGAAGCAAATCCAGTGCGGTCAGCGGCGACGCGGACGCGTCGCGGCTCGCGGAATTTCGGTTTTCATTTTTTCATCGAAAAGTCCTGTTTTTTTCGGAATTTTTCAGTCAAATTCAGCATTTGACCTCWTATTTGAGCTAAAAATCAATCAATTTTTTCACTTTTTTTTCAATTCAGAAATTCTGGAATTTTGATTTTCAGCCAGTTTTTTCTGGAAAATTCTGGATTTTTGGCTGAAAATTCTGATTTTTAGGCCAATTTCGCAATCCCCTCTCACCACCTGACACCACACGCGACGCGACCGCGCCGCTTGCCCCGCGCGCCCGCCAATTTCGAAATTAGCGATGCGCGCGCGTTGCGGTCGCGTAGCGTGTCCGGCCTTAGTTTTTCAAAAATCGGTCATTTTTACCCGATGTCGTCGTGATGAGCGGCGGTTTTTTGGGGCTCTTTTTTAAATATTTTTTTTCAGGTTTAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAATTCCAGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTAGTCGATTTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTGAAGCAAATCCAGTG</pcr_primer_p1>
		<pcr_primer_p2>AAATTGGCCTAAAAATCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>AAATTGAAGCAAATCCAGTGCGGTCAGCGGCGACGCGGACGCGTCGCGGCTCGCGGAATTTCGGTTTTCATTTTTTCATCGAAAAGTCCTGTTTTTTTCGGAATTTTTCAGTCAAATTCAGCATTTGACCTCATATTTGAGCTAAAAATCAATCAATTTTTTCACTTTTTTTTCAATTCAGAAATTCTGGAATTTTGATTTTCAGCCAGTTTTTTCTGGAAAATTCTGGATTTTTGGCTGAAAATTCTGATTTTTAGGCCAATTT</canonical_amplicon>
		<polymorphic_amplicon>AAATTGAAGCAAATCCAGTGCGGTCAGCGGCGACGCGGACGCGTCGCGGCTCGCGGAATTTCGGTTTTCATTTTTTCATCGAAAAGTCCTGTTTTTTTCGGAATTTTTCAGTCAAATTCAGCATTTGACCTCWTATTTGAGCTAAAAATCAATCAATTTTTTCACTTTTTTTTCAATTCAGAAATTCTGGAATTTTGATTTTCAGCCAGTTTTTTCTGGAAAATTCTGGATTTTTGGCTGAAAATTCTGATTTTTAGGCCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20801</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>95841</contig_pos>
        <strand></strand>
        <context>TTTTCAGCCA[G/A]TTTTTTCTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTCACTTTTTTTTCAATTCAGAAATTCTGGAATTTTGATTTTCAGCCA</left_flank>
        <right_flank>TTTTTTCTGGAAAATTCTGGATTTTTGGCTGAAAATTCTGATTTTTAGGC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGCCAAGTCTTTCTCTGTGCTCTCTTCTCCCTTCGTCACGTGTCTTCTTCTGTCTGAGTATCAAACGCATTTGGCTTCGTACTTCTTCTATTCTGGCCATACACATGTCATTTGTATACGTTTCGGAGTGTGCGTGCGCGCCTTTTTAGGCTTTTTTAGACCAAAATTTCGGGTTTTAGGCTAAAAATATTGTTTTTTGGGGGTTTTTTTTCAGCTTTAAACCTCATTTTTCAGCCAGAAAACCATATTTTTAGCTGGTAAACTCCTTTTTCTGCATTTTCCGTCTCAGAAATTGAAGCAAATCCAGTGCGGTCAGCGGCGACGCGGACGCGTCGCGGCTCGCGGAATTTCGGTTTTCATTTTTTCATCGAAAAGTCCTGTTTTTTTCGGAATTTTTCAGTCAAATTCAGCATTTGACCTCATATTTGAGCTAAAAATCAATCAATTTTTTCACTTTTTTTTCAATTCAGAAATTCTGGAATTTTGATTTTCAGCCAGTTTTTTCTGGAAAATTCTGGATTTTTGGCTGAAAATTCTGATTTTTAGGCCAATTTCGCAATCCCCTCTCACCACCTGACACCACACGCGACGCGACCGCGCCGCTTGCCCCGCGCGCCCGCCAATTTCGAAATTAGCGATGCGCGCGCGTTGCGGTCGCGTAGCGTGTCCGGCCTTAGTTTTTCAAAAATCGGTCATTTTTACCCGATGTCGTCGTGATGAGCGGCGGTTTTTTGGGGCTCTTTTTTAAATATTTTTTTTCAGGTTTAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAATTCCAGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTAGTCGATTTTGCGGAAATTTTTCTGAAATGTCTGAGAAAATCTTAATTTTCTGAAAATTCCAGATTTTTCTCAGAAAAATATGGTTTT</canonical>
            <polymorphic>CCAGCCAAGTCTTTCTCTGTGCTCTCTTCTCCCTTCGTCACGTGTCTTCTTCTGTCTGAGTATCAAACGCATTTGGCTTCGTACTTCTTCTATTCTGGCCATACACATGTCATTTGTATACGTTTCGGAGTGTGCGTGCGCGCCTTTTTAGGCTTTTTTAGACCAAAATTTCGGGTTTTAGGCTAAAAATATTGTTTTTTGGGGGTTTTTTTTCAGCTTTAAACCTCATTTTTCAGCCAGAAAACCATATTTTTAGCTGGTAAACTCCTTTTTCTGCATTTTCCGTCTCAGAAATTGAAGCAAATCCAGTGCGGTCAGCGGCGACGCGGACGCGTCGCGGCTCGCGGAATTTCGGTTTTCATTTTTTCATCGAAAAGTCCTGTTTTTTTCGGAATTTTTCAGTCAAATTCAGCATTTGACCTCATATTTGAGCTAAAAATCAATCAATTTTTTCACTTTTTTTTCAATTCAGAAATTCTGGAATTTTGATTTTCAGCCARTTTTTTCTGGAAAATTCTGGATTTTTGGCTGAAAATTCTGATTTTTAGGCCAATTTCGCAATCCCCTCTCACCACCTGACACCACACGCGACGCGACCGCGCCGCTTGCCCCGCGCGCCCGCCAATTTCGAAATTAGCGATGCGCGCGCGTTGCGGTCGCGTAGCGTGTCCGGCCTTAGTTTTTCAAAAATCGGTCATTTTTACCCGATGTCGTCGTGATGAGCGGCGGTTTTTTGGGGCTCTTTTTTAAATATTTTTTTTCAGGTTTAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAATTCCAGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTAGTCGATTTTGCGGAAATTTTTCTGAAATGTCTGAGAAAATCTTAATTTTCTGAAAATTCCAGATTTTTCTCAGAAAAATATGGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTGAAGCAAATCCAGTG</pcr_primer_p1>
		<pcr_primer_p2>AAATTGGCCTAAAAATCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>AAATTGAAGCAAATCCAGTGCGGTCAGCGGCGACGCGGACGCGTCGCGGCTCGCGGAATTTCGGTTTTCATTTTTTCATCGAAAAGTCCTGTTTTTTTCGGAATTTTTCAGTCAAATTCAGCATTTGACCTCATATTTGAGCTAAAAATCAATCAATTTTTTCACTTTTTTTTCAATTCAGAAATTCTGGAATTTTGATTTTCAGCCAGTTTTTTCTGGAAAATTCTGGATTTTTGGCTGAAAATTCTGATTTTTAGGCCAATTT</canonical_amplicon>
		<polymorphic_amplicon>AAATTGAAGCAAATCCAGTGCGGTCAGCGGCGACGCGGACGCGTCGCGGCTCGCGGAATTTCGGTTTTCATTTTTTCATCGAAAAGTCCTGTTTTTTTCGGAATTTTTCAGTCAAATTCAGCATTTGACCTCATATTTGAGCTAAAAATCAATCAATTTTTTCACTTTTTTTTCAATTCAGAAATTCTGGAATTTTGATTTTCAGCCARTTTTTTCTGGAAAATTCTGGATTTTTGGCTGAAAATTCTGATTTTTAGGCCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20802</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>96204</contig_pos>
        <strand>+</strand>
        <context>TCTCTTAAAT[C/T]AGTTTTTTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCTAATTCCAGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAAT</left_flank>
        <right_flank>AGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCATCGAAAAGTCCTGTTTTTTTCGGAATTTTTCAGTCAAATTCAGCATTTGACCTCATATTTGAGCTAAAAATCAATCAATTTTTTCACTTTTTTTTCAATTCAGAAATTCTGGAATTTTGATTTTCAGCCAGTTTTTTCTGGAAAATTCTGGATTTTTGGCTGAAAATTCTGATTTTTAGGCCAATTTCGCAATCCCCTCTCACCACCTGACACCACACGCGACGCGACCGCGCCGCTTGCCCCGCGCGCCCGCCAATTTCGAAATTAGCGATGCGCGCGCGTTGCGGTCGCGTAGCGTGTCCGGCCTTAGTTTTTCAAAAATCGGTCATTTTTACCCGATGTCGTCGTGATGAGCGGCGGTTTTTTGGGGCTCTTTTTTAAATATTTTTTTTCAGGTTTAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAATTCCAGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTAGTCGATTTTGCGGAAATTTTTCTGAAATGTCTGAGAAAATCTTAATTTTCTGAAAATTCCAGATTTTTCTCAGAAAAATATGGTTTTTTTTTGGAGCGAAATCTTTCTTCTTTAGCTCCCCTGCTGCGTGGCACGCGACGCGACCGCTTCGCGCGGGAGGGAATCGCAACCGCGCTCCACCGTACGCGCGGCTTGTCGCGTCGCGGCACGCGCGAAGTTGAAGCATTTGAATTTGTTTCGGTGATATTAAGGGGAAAATTGATCGTTTTGTGACTTTTCGGGTCTTTTTTTCGCGATTTTGTTTGAAAAAGTAGTATAATATGTGGGGAATTCCCTAGTGAATGTTGATTTTAGCAGAAGTTTCCCCGAAAATATAATTTTTTTCGAAAAAAAGAATACTTTTTAGAATTTGTTTGTTTTTGTTTTATCGCAGCAGTTCCCAAAGGATTC</canonical>
            <polymorphic>TTTTCATCGAAAAGTCCTGTTTTTTTCGGAATTTTTCAGTCAAATTCAGCATTTGACCTCATATTTGAGCTAAAAATCAATCAATTTTTTCACTTTTTTTTCAATTCAGAAATTCTGGAATTTTGATTTTCAGCCAGTTTTTTCTGGAAAATTCTGGATTTTTGGCTGAAAATTCTGATTTTTAGGCCAATTTCGCAATCCCCTCTCACCACCTGACACCACACGCGACGCGACCGCGCCGCTTGCCCCGCGCGCCCGCCAATTTCGAAATTAGCGATGCGCGCGCGTTGCGGTCGCGTAGCGTGTCCGGCCTTAGTTTTTCAAAAATCGGTCATTTTTACCCGATGTCGTCGTGATGAGCGGCGGTTTTTTGGGGCTCTTTTTTAAATATTTTTTTTCAGGTTTAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAATTCCAGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATYAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTAGTCGATTTTGCGGAAATTTTTCTGAAATGTCTGAGAAAATCTTAATTTTCTGAAAATTCCAGATTTTTCTCAGAAAAATATGGTTTTTTTTTGGAGCGAAATCTTTCTTCTTTAGCTCCCCTGCTGCGTGGCACGCGACGCGACCGCTTCGCGCGGGAGGGAATCGCAACCGCGCTCCACCGTACGCGCGGCTTGTCGCGTCGCGGCACGCGCGAAGTTGAAGCATTTGAATTTGTTTCGGTGATATTAAGGGGAAAATTGATCGTTTTGTGACTTTTCGGGTCTTTTTTTCGCGATTTTGTTTGAAAAAGTAGTATAATATGTGGGGAATTCCCTAGTGAATGTTGATTTTAGCAGAAGTTTCCCCGAAAATATAATTTTTTTCGAAAAAAAGAATACTTTTTAGAATTTGTTTGTTTTTGTTTTATCGCAGCAGTTCCCAAAGGATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>185 175 72 72 47 44 43 40 36 31 31 29 29 27 21 20 19 18 13 13 11 8 8 8</canonical_bands>
                <polymorphic_bands>185 175 79 72 72 47 44 40 31 31 29 29 27 21 20 19 18 13 13 11 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAATCGGTCATTTTTACC</pcr_primer_p1>
		<pcr_primer_p2>AATTAAGATTTTCTCAGACATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>276</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATCGGTCATTTTTACCCGATGTCGTCGTGATGAGCGGCGGTTTTTTGGGGCTCTTTTTTAAATATTTTTTTTCAGGTTTAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAATTCCAGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTAGTCGATTTTGCGGAAATTTTTCTGAAATGTCTGAGAAAATCTTAATT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAATCGGTCATTTTTACCCGATGTCGTCGTGATGAGCGGCGGTTTTTTGGGGCTCTTTTTTAAATATTTTTTTTCAGGTTTAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAATTCCAGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATYAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTAGTCGATTTTGCGGAAATTTTTCTGAAATGTCTGAGAAAATCTTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20803</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>96227</contig_pos>
        <strand>+</strand>
        <context>AAAGTTTTCT[A/T]AAATCGACCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCT</left_flank>
        <right_flank>AAATCGACCAATTTTTGAGAAAAATTAGTCGATTTTGCGGAAATTTTTCT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGGAATTTTTCAGTCAAATTCAGCATTTGACCTCATATTTGAGCTAAAAATCAATCAATTTTTTCACTTTTTTTTCAATTCAGAAATTCTGGAATTTTGATTTTCAGCCAGTTTTTTCTGGAAAATTCTGGATTTTTGGCTGAAAATTCTGATTTTTAGGCCAATTTCGCAATCCCCTCTCACCACCTGACACCACACGCGACGCGACCGCGCCGCTTGCCCCGCGCGCCCGCCAATTTCGAAATTAGCGATGCGCGCGCGTTGCGGTCGCGTAGCGTGTCCGGCCTTAGTTTTTCAAAAATCGGTCATTTTTACCCGATGTCGTCGTGATGAGCGGCGGTTTTTTGGGGCTCTTTTTTAAATATTTTTTTTCAGGTTTAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAATTCCAGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTAGTCGATTTTGCGGAAATTTTTCTGAAATGTCTGAGAAAATCTTAATTTTCTGAAAATTCCAGATTTTTCTCAGAAAAATATGGTTTTTTTTTGGAGCGAAATCTTTCTTCTTTAGCTCCCCTGCTGCGTGGCACGCGACGCGACCGCTTCGCGCGGGAGGGAATCGCAACCGCGCTCCACCGTACGCGCGGCTTGTCGCGTCGCGGCACGCGCGAAGTTGAAGCATTTGAATTTGTTTCGGTGATATTAAGGGGAAAATTGATCGTTTTGTGACTTTTCGGGTCTTTTTTTCGCGATTTTGTTTGAAAAAGTAGTATAATATGTGGGGAATTCCCTAGTGAATGTTGATTTTAGCAGAAGTTTCCCCGAAAATATAATTTTTTTCGAAAAAAAGAATACTTTTTAGAATTTGTTTGTTTTTGTTTTATCGCAGCAGTTCCCAAAGGATTCCAGAGATTTTCGAAGTTTTCTAA</canonical>
            <polymorphic>TTTCGGAATTTTTCAGTCAAATTCAGCATTTGACCTCATATTTGAGCTAAAAATCAATCAATTTTTTCACTTTTTTTTCAATTCAGAAATTCTGGAATTTTGATTTTCAGCCAGTTTTTTCTGGAAAATTCTGGATTTTTGGCTGAAAATTCTGATTTTTAGGCCAATTTCGCAATCCCCTCTCACCACCTGACACCACACGCGACGCGACCGCGCCGCTTGCCCCGCGCGCCCGCCAATTTCGAAATTAGCGATGCGCGCGCGTTGCGGTCGCGTAGCGTGTCCGGCCTTAGTTTTTCAAAAATCGGTCATTTTTACCCGATGTCGTCGTGATGAGCGGCGGTTTTTTGGGGCTCTTTTTTAAATATTTTTTTTCAGGTTTAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAATTCCAGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCTWAAATCGACCAATTTTTGAGAAAAATTAGTCGATTTTGCGGAAATTTTTCTGAAATGTCTGAGAAAATCTTAATTTTCTGAAAATTCCAGATTTTTCTCAGAAAAATATGGTTTTTTTTTGGAGCGAAATCTTTCTTCTTTAGCTCCCCTGCTGCGTGGCACGCGACGCGACCGCTTCGCGCGGGAGGGAATCGCAACCGCGCTCCACCGTACGCGCGGCTTGTCGCGTCGCGGCACGCGCGAAGTTGAAGCATTTGAATTTGTTTCGGTGATATTAAGGGGAAAATTGATCGTTTTGTGACTTTTCGGGTCTTTTTTTCGCGATTTTGTTTGAAAAAGTAGTATAATATGTGGGGAATTCCCTAGTGAATGTTGATTTTAGCAGAAGTTTCCCCGAAAATATAATTTTTTTCGAAAAAAAGAATACTTTTTAGAATTTGTTTGTTTTTGTTTTATCGCAGCAGTTCCCAAAGGATTCCAGAGATTTTCGAAGTTTTCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAATCGGTCATTTTTACC</pcr_primer_p1>
		<pcr_primer_p2>AATTAAGATTTTCTCAGACATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>276</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATCGGTCATTTTTACCCGATGTCGTCGTGATGAGCGGCGGTTTTTTGGGGCTCTTTTTTAAATATTTTTTTTCAGGTTTAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAATTCCAGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTAGTCGATTTTGCGGAAATTTTTCTGAAATGTCTGAGAAAATCTTAATT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAATCGGTCATTTTTACCCGATGTCGTCGTGATGAGCGGCGGTTTTTTGGGGCTCTTTTTTAAATATTTTTTTTCAGGTTTAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAATTCCAGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCTWAAATCGACCAATTTTTGAGAAAAATTAGTCGATTTTGCGGAAATTTTTCTGAAATGTCTGAGAAAATCTTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20805</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>99872</contig_pos>
        <strand></strand>
        <context>ACATTTTTAT[T/C]GGTGTTGGtt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTGGATGGACCACCAAAACGGGATTTTCTGATGATTGTGAACATTTTTAT</left_flank>
        <right_flank>GGTGTTGGTTAGTGGATTTGAATTTGGGGCATTGAGAGCTTTAAAATGAG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAAAATCGGTTAAAAGCGGCTGCAATTTGTCGTGTTTGGGCTCGTTTTGAAGCTCAAAATGCGCCGAAATCAACAATTCCAGATTTTCAGCTCAGGAAATTCCAGAAAATCTGAAAATTCAATTTCAGACGTTCTCTTCATTTTTCTCATCGTTGGACTCATCGTTTTGGGCGTTTTCACCATCAAAAAACGCACTTATTTGACACTAAATTCATGGGAATTGGCTCAAGAAATCGCTGAAAATGCCACGGAGTTGGCAATGGAGAATGGGACTACTGTAGGTGGCTTACGGTGGCCTAGAAATTTCTTTTTCGACATTTCTAGGCCACCATCTCCTCCTGGTGGCCTAGAAAATCTAAGAAACCATTCCTCCTTCTTTTTCAGAACATCGACTTCGCTACCGTACTCTGGAGTGTCGGCGTGGAACTGGTGAATACGGTAAAAGTGTTGGATGGACCACCAAAACGGGATTTTCTGATGATTGTGAACATTTTTATTGGTGTTGGTTAGTGGATTTGAATTTGGGGCATTGAGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTGAGTTTTCACACTTTAAAGGCGCATAAGGGGCAGGAAATTTGAAAATCCAGGAAAGTAGGTCATGATTATACTCATTTTAAAGCACAAACTTTGACGAATAGGAAAATCGTTGTTTTGTTCAAAAATATTTGCAAAATAAGAAAGTTATGGGGAAAACAAGTTTTTTAGAATTTCCCTAAAATATTTAGTTTGCCTCATAACTTTCTTAAAATCTACAATTTTTGAATGAAACTTAACTTTTCAATTTTTCGCACTATGAGCTTTAAAATAAGTATAATCATGACTAGACTGCGCCCACTTTGAAAATTGAAGACCCCTATGCGCCTTTAAAACCAAATTTAGGAAAATTTCAAAATGGGCGGAACCTAGTCGTGTTTAGGCTTATTTTAAAGCTCTCAACGCGGGAAATTCGAAAATCTA</canonical>
            <polymorphic>CTCAAAATCGGTTAAAAGCGGCTGCAATTTGTCGTGTTTGGGCTCGTTTTGAAGCTCAAAATGCGCCGAAATCAACAATTCCAGATTTTCAGCTCAGGAAATTCCAGAAAATCTGAAAATTCAATTTCAGACGTTCTCTTCATTTTTCTCATCGTTGGACTCATCGTTTTGGGCGTTTTCACCATCAAAAAACGCACTTATTTGACACTAAATTCATGGGAATTGGCTCAAGAAATCGCTGAAAATGCCACGGAGTTGGCAATGGAGAATGGGACTACTGTAGGTGGCTTACGGTGGCCTAGAAATTTCTTTTTCGACATTTCTAGGCCACCATCTCCTCCTGGTGGCCTAGAAAATCTAAGAAACCATTCCTCCTTCTTTTTCAGAACATCGACTTCGCTACCGTACTCTGGAGTGTCGGCGTGGAACTGGTGAATACGGTAAAAGTGTTGGATGGACCACCAAAACGGGATTTTCTGATGATTGTGAACATTTTTATYGGTGTTGGTTAGTGGATTTGAATTTGGGGCATTGAGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTGAGTTTTCACACTTTAAAGGCGCATAAGGGGCAGGAAATTTGAAAATCCAGGAAAGTAGGTCATGATTATACTCATTTTAAAGCACAAACTTTGACGAATAGGAAAATCGTTGTTTTGTTCAAAAATATTTGCAAAATAAGAAAGTTATGGGGAAAACAAGTTTTTTAGAATTTCCCTAAAATATTTAGTTTGCCTCATAACTTTCTTAAAATCTACAATTTTTGAATGAAACTTAACTTTTCAATTTTTCGCACTATGAGCTTTAAAATAAGTATAATCATGACTAGACTGCGCCCACTTTGAAAATTGAAGACCCCTATGCGCCTTTAAAACCAAATTTAGGAAAATTTCAAAATGGGCGGAACCTAGTCGTGTTTAGGCTTATTTTAAAGCTCTCAACGCGGGAAATTCGAAAATCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTAAAAGTGTTGGATGGAC</pcr_primer_p1>
		<pcr_primer_p2>TTGTCATGCACATCATCATC</pcr_primer_p2>
		<pcr_amplicon_size>890</pcr_amplicon_size>
		<canonical_amplicon>GGTAAAAGTGTTGGATGGACCACCAAAACGGGATTTTCTGATGATTGTGAACATTTTTATTGGTGTTGGTTAGTGGATTT</canonical_amplicon>
		<polymorphic_amplicon>GGTAAAAGTGTTGGATGGACCACCAAAACGGGATTTTCTGATGATTGTGAACATTTTTATYGGTGTTGGTTAGTGGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20806</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>99859</contig_pos>
        <strand></strand>
        <context>CTGATGATTG[T/C]GAACATTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TACGGTAAAAGTGTTGGATGGACCACCAAAACGGGATTTTCTGATGATTG</left_flank>
        <right_flank>GAACATTTTTATTGGTGTTGGTTAGTGGATTTGAATTTGGGGCATTGAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTGAAAATCGCTCAAAATCGGTTAAAAGCGGCTGCAATTTGTCGTGTTTGGGCTCGTTTTGAAGCTCAAAATGCGCCGAAATCAACAATTCCAGATTTTCAGCTCAGGAAATTCCAGAAAATCTGAAAATTCAATTTCAGACGTTCTCTTCATTTTTCTCATCGTTGGACTCATCGTTTTGGGCGTTTTCACCATCAAAAAACGCACTTATTTGACACTAAATTCATGGGAATTGGCTCAAGAAATCGCTGAAAATGCCACGGAGTTGGCAATGGAGAATGGGACTACTGTAGGTGGCTTACGGTGGCCTAGAAATTTCTTTTTCGACATTTCTAGGCCACCATCTCCTCCTGGTGGCCTAGAAAATCTAAGAAACCATTCCTCCTTCTTTTTCAGAACATCGACTTCGCTACCGTACTCTGGAGTGTCGGCGTGGAACTGGTGAATACGGTAAAAGTGTTGGATGGACCACCAAAACGGGATTTTCTGATGATTGTGAACATTTTTATTGGTGTTGGTTAGTGGATTTGAATTTGGGGCATTGAGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTGAGTTTTCACACTTTAAAGGCGCATAAGGGGCAGGAAATTTGAAAATCCAGGAAAGTAGGTCATGATTATACTCATTTTAAAGCACAAACTTTGACGAATAGGAAAATCGTTGTTTTGTTCAAAAATATTTGCAAAATAAGAAAGTTATGGGGAAAACAAGTTTTTTAGAATTTCCCTAAAATATTTAGTTTGCCTCATAACTTTCTTAAAATCTACAATTTTTGAATGAAACTTAACTTTTCAATTTTTCGCACTATGAGCTTTAAAATAAGTATAATCATGACTAGACTGCGCCCACTTTGAAAATTGAAGACCCCTATGCGCCTTTAAAACCAAATTTAGGAAAATTTCAAAATGGGCGGAACCTAGTCGTGTTTAGGCTTATTTTAAAGCTCTCAACGCGGGAA</canonical>
            <polymorphic>GTTTTGAAAATCGCTCAAAATCGGTTAAAAGCGGCTGCAATTTGTCGTGTTTGGGCTCGTTTTGAAGCTCAAAATGCGCCGAAATCAACAATTCCAGATTTTCAGCTCAGGAAATTCCAGAAAATCTGAAAATTCAATTTCAGACGTTCTCTTCATTTTTCTCATCGTTGGACTCATCGTTTTGGGCGTTTTCACCATCAAAAAACGCACTTATTTGACACTAAATTCATGGGAATTGGCTCAAGAAATCGCTGAAAATGCCACGGAGTTGGCAATGGAGAATGGGACTACTGTAGGTGGCTTACGGTGGCCTAGAAATTTCTTTTTCGACATTTCTAGGCCACCATCTCCTCCTGGTGGCCTAGAAAATCTAAGAAACCATTCCTCCTTCTTTTTCAGAACATCGACTTCGCTACCGTACTCTGGAGTGTCGGCGTGGAACTGGTGAATACGGTAAAAGTGTTGGATGGACCACCAAAACGGGATTTTCTGATGATTGYGAACATTTTTATTGGTGTTGGTTAGTGGATTTGAATTTGGGGCATTGAGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTGAGTTTTCACACTTTAAAGGCGCATAAGGGGCAGGAAATTTGAAAATCCAGGAAAGTAGGTCATGATTATACTCATTTTAAAGCACAAACTTTGACGAATAGGAAAATCGTTGTTTTGTTCAAAAATATTTGCAAAATAAGAAAGTTATGGGGAAAACAAGTTTTTTAGAATTTCCCTAAAATATTTAGTTTGCCTCATAACTTTCTTAAAATCTACAATTTTTGAATGAAACTTAACTTTTCAATTTTTCGCACTATGAGCTTTAAAATAAGTATAATCATGACTAGACTGCGCCCACTTTGAAAATTGAAGACCCCTATGCGCCTTTAAAACCAAATTTAGGAAAATTTCAAAATGGGCGGAACCTAGTCGTGTTTAGGCTTATTTTAAAGCTCTCAACGCGGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>169 145 77 74 71 49 44 44 43 36 34 33 27 17 16 16 15 15 13 12 11 10 10 9 8 2</canonical_bands>
                <polymorphic_bands>169 145 77 74 71 49 44 44 43 43 36 34 33 17 16 15 15 13 12 11 10 10 9 8 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGAATACGGTAAAAGTGTTG</pcr_primer_p1>
		<pcr_primer_p2>TTGTCATGCACATCATCATC</pcr_primer_p2>
		<pcr_amplicon_size>899</pcr_amplicon_size>
		<canonical_amplicon>GGTGAATACGGTAAAAGTGTTGGATGGACCACCAAAACGGGATTTTCTGATGATTGTGAACATTTTTATTGGTGTT</canonical_amplicon>
		<polymorphic_amplicon>GGTGAATACGGTAAAAGTGTTGGATGGACCACCAAAACGGGATTTTCTGATGATTGYGAACATTTTTATTGGTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20809</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>184606</contig_pos>
        <strand></strand>
        <context>cttaaaatgc[C/A]tttaaaatga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GGTTGGGGTGGGGAGGGGGGCAAGAAGGCTGAGCAATCACCTTAAAATGC</left_flank>
        <right_flank>TTTAAAATGACTGAAAATAGCTTGAAATTAGCTGAAAAATTGTCAGGAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTGACATTCCACACGAGACAACCCCAAAAAGTGATATGTAATGTATTTGGGACGGATGAGACGATCGAAATCCTAGATGTCATTGATTTCACATCGGATAGAAAGCGGATGAGTGTGATAGTCAGAGATCAAGAAGGAGAGATCAAACTATATACGAAAGGAGCGGATACCGTAATCTTCGAGCGCCTTGTGAGAGGATCTGAGCAATCCGTCGACTGGTGTACTGATCATTTGGAAGACTACGCCTCGTTTGGATACCGTACACTTTGTTTTGCAGTTCGAAAACTGTCAGATGGAGAGTATGAGCAATGGGCGCCAGAATACAAGAAGGCGATACTGGCAATTGAGAATAGAGCGAAATTGCTGGCAGACGCCGCGGAGAAGCTGGAGAAGGATATGGTTCTAGTTGGAGCCACGGCCATAGAGGATAAGTTGCAGGAGGTAAGGGTTGGGGTGGGGAGGGGGGCAAGAAGGCTGAGCAATCACCTTAAAATGCCTTTAAAATGACTGAAAATAGCTTGAAATTAGCTGAAAAATTGTCAGGAAACCACCAAAATAGGTCTAGGACACTTTGAACCCGAAAAATAGAATTTTGAGCAATTTTCCAGTATAATGACCGAATGGCTCAGTGGGATTTTCGATAGCAATCTCAACACCCGGGTTCGATTCCTCTTGGTGGCAAAATTTTTTGATTTTTGTGTAGACCATTTTTAGACGTTTCCAGAACAATCTAGTGCTGAAATTTCGATTTTTCGAAAAATCTGAAAGTTTCAGAAAAATTTTTTTTTTTGAAATTTTATCGAAAATGACTCTACAACGCCTTTTAGAAAAATTTTCAGATTTTTTTTGAAAAAAAATTTTCCCCAATTTTCAGTGGGTCCCCGAAACGATTCAAGCTCTCATGGCAGCTGATATCAGAGTATGGATGCTAACTGGTGATAAGAGAGAAACGGCAATCAACATTGCTCATTCGTGTGCCCTAGTTCATCCGAACACA</canonical>
            <polymorphic>AAAGTGACATTCCACACGAGACAACCCCAAAAAGTGATATGTAATGTATTTGGGACGGATGAGACGATCGAAATCCTAGATGTCATTGATTTCACATCGGATAGAAAGCGGATGAGTGTGATAGTCAGAGATCAAGAAGGAGAGATCAAACTATATACGAAAGGAGCGGATACCGTAATCTTCGAGCGCCTTGTGAGAGGATCTGAGCAATCCGTCGACTGGTGTACTGATCATTTGGAAGACTACGCCTCGTTTGGATACCGTACACTTTGTTTTGCAGTTCGAAAACTGTCAGATGGAGAGTATGAGCAATGGGCGCCAGAATACAAGAAGGCGATACTGGCAATTGAGAATAGAGCGAAATTGCTGGCAGACGCCGCGGAGAAGCTGGAGAAGGATATGGTTCTAGTTGGAGCCACGGCCATAGAGGATAAGTTGCAGGAGGTAAGGGTTGGGGTGGGGAGGGGGGCAAGAAGGCTGAGCAATCACCTTAAAATGCMTTTAAAATGACTGAAAATAGCTTGAAATTAGCTGAAAAATTGTCAGGAAACCACCAAAATAGGTCTAGGACACTTTGAACCCGAAAAATAGAATTTTGAGCAATTTTCCAGTATAATGACCGAATGGCTCAGTGGGATTTTCGATAGCAATCTCAACACCCGGGTTCGATTCCTCTTGGTGGCAAAATTTTTTGATTTTTGTGTAGACCATTTTTAGACGTTTCCAGAACAATCTAGTGCTGAAATTTCGATTTTTCGAAAAATCTGAAAGTTTCAGAAAAATTTTTTTTTTTGAAATTTTATCGAAAATGACTCTACAACGCCTTTTAGAAAAATTTTCAGATTTTTTTTGAAAAAAAATTTTCCCCAATTTTCAGTGGGTCCCCGAAACGATTCAAGCTCTCATGGCAGCTGATATCAGAGTATGGATGCTAACTGGTGATAAGAGAGAAACGGCAATCAACATTGCTCATTCGTGTGCCCTAGTTCATCCGAACACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATAAGTTGCAGGAGGTAAGG</pcr_primer_p1>
		<pcr_primer_p2>AGGCGTTGTAGAGTCATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>396</pcr_amplicon_size>
		<canonical_amplicon>GATAAGTTGCAGGAGGTAAGGGTTGGGGTGGGGAGGGGGGCAAGAAGGCTGAGCAATCACCTTAAAATGCCTTTAAAATGACTGAAAATAGCTTGAAATTAGCTGAAAAATTGTCAGGAAACCACCAAAATAGGTCTAGGACACTTTGAACCCGAAAAATAGAATTTTGAGCAATTTTCCAGTATAATGACCGAATGGCTCAGTGGGATTTTCGATAGCAATCTCAACACCCGGGTTCGATTCCTCTTGGTGGCAAAATTTTTTGATTTTTGTGTAGACCATTTTTAGACGTTTCCAGAACAATCTAGTGCTGAAATTTCGATTTTTCGAAAAATCTGAAAGTTTCAGAAAAATTTTTTTTTTTGAAATTTTATCGAAAATGACTCTACAACGCCT</canonical_amplicon>
		<polymorphic_amplicon>GATAAGTTGCAGGAGGTAAGGGTTGGGGTGGGGAGGGGGGCAAGAAGGCTGAGCAATCACCTTAAAATGCMTTTAAAATGACTGAAAATAGCTTGAAATTAGCTGAAAAATTGTCAGGAAACCACCAAAATAGGTCTAGGACACTTTGAACCCGAAAAATAGAATTTTGAGCAATTTTCCAGTATAATGACCGAATGGCTCAGTGGGATTTTCGATAGCAATCTCAACACCCGGGTTCGATTCCTCTTGGTGGCAAAATTTTTTGATTTTTGTGTAGACCATTTTTAGACGTTTCCAGAACAATCTAGTGCTGAAATTTCGATTTTTCGAAAAATCTGAAAGTTTCAGAAAAATTTTTTTTTTTGAAATTTTATCGAAAATGACTCTACAACGCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20810</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>184446</contig_pos>
        <strand></strand>
        <context>GAAGGCGATA[C/T]TGGCAATTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTCAGATGGAGAGTATGAGCAATGGGCGCCAGAATACAAGAAGGCGATA</left_flank>
        <right_flank>TGGCAATTGAGAATAGAGCGAAATTGCTGGCAGACGCCGCGGAGAAGCTG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACAGATTTTTGCTCGAATTTTTAAATTTTTTAGCGAAAAATTTTCCAGATGATGGCCGTGTGTCATACTGTAGTTCCGGAGAACAAGGACGACGGAGAGTTGATCTACCAATCGAGCAGTCCGGACGAGGCGGCACTGGTCCGTGGAGCGGCGTCTCAAAAAGTGACATTCCACACGAGACAACCCCAAAAAGTGATATGTAATGTATTTGGGACGGATGAGACGATCGAAATCCTAGATGTCATTGATTTCACATCGGATAGAAAGCGGATGAGTGTGATAGTCAGAGATCAAGAAGGAGAGATCAAACTATATACGAAAGGAGCGGATACCGTAATCTTCGAGCGCCTTGTGAGAGGATCTGAGCAATCCGTCGACTGGTGTACTGATCATTTGGAAGACTACGCCTCGTTTGGATACCGTACACTTTGTTTTGCAGTTCGAAAACTGTCAGATGGAGAGTATGAGCAATGGGCGCCAGAATACAAGAAGGCGATACTGGCAATTGAGAATAGAGCGAAATTGCTGGCAGACGCCGCGGAGAAGCTGGAGAAGGATATGGTTCTAGTTGGAGCCACGGCCATAGAGGATAAGTTGCAGGAGGTAAGGGTTGGGGTGGGGAGGGGGGCAAGAAGGCTGAGCAATCACCTTAAAATGCCTTTAAAATGACTGAAAATAGCTTGAAATTAGCTGAAAAATTGTCAGGAAACCACCAAAATAGGTCTAGGACACTTTGAACCCGAAAAATAGAATTTTGAGCAATTTTCCAGTATAATGACCGAATGGCTCAGTGGGATTTTCGATAGCAATCTCAACACCCGGGTTCGATTCCTCTTGGTGGCAAAATTTTTTGATTTTTGTGTAGACCATTTTTAGACGTTTCCAGAACAATCTAGTGCTGAAATTTCGATTTTTCGAAAAATCTGAAAGTTTCAGAAAAATTTTTTTTTTTGAAATTTTATCGAAAATGACTCTACAACGCCTTTTAGAAAAATTTTC</canonical>
            <polymorphic>GACAGATTTTTGCTCGAATTTTTAAATTTTTTAGCGAAAAATTTTCCAGATGATGGCCGTGTGTCATACTGTAGTTCCGGAGAACAAGGACGACGGAGAGTTGATCTACCAATCGAGCAGTCCGGACGAGGCGGCACTGGTCCGTGGAGCGGCGTCTCAAAAAGTGACATTCCACACGAGACAACCCCAAAAAGTGATATGTAATGTATTTGGGACGGATGAGACGATCGAAATCCTAGATGTCATTGATTTCACATCGGATAGAAAGCGGATGAGTGTGATAGTCAGAGATCAAGAAGGAGAGATCAAACTATATACGAAAGGAGCGGATACCGTAATCTTCGAGCGCCTTGTGAGAGGATCTGAGCAATCCGTCGACTGGTGTACTGATCATTTGGAAGACTACGCCTCGTTTGGATACCGTACACTTTGTTTTGCAGTTCGAAAACTGTCAGATGGAGAGTATGAGCAATGGGCGCCAGAATACAAGAAGGCGATAYTGGCAATTGAGAATAGAGCGAAATTGCTGGCAGACGCCGCGGAGAAGCTGGAGAAGGATATGGTTCTAGTTGGAGCCACGGCCATAGAGGATAAGTTGCAGGAGGTAAGGGTTGGGGTGGGGAGGGGGGCAAGAAGGCTGAGCAATCACCTTAAAATGCCTTTAAAATGACTGAAAATAGCTTGAAATTAGCTGAAAAATTGTCAGGAAACCACCAAAATAGGTCTAGGACACTTTGAACCCGAAAAATAGAATTTTGAGCAATTTTCCAGTATAATGACCGAATGGCTCAGTGGGATTTTCGATAGCAATCTCAACACCCGGGTTCGATTCCTCTTGGTGGCAAAATTTTTTGATTTTTGTGTAGACCATTTTTAGACGTTTCCAGAACAATCTAGTGCTGAAATTTCGATTTTTCGAAAAATCTGAAAGTTTCAGAAAAATTTTTTTTTTTGAAATTTTATCGAAAATGACTCTACAACGCCTTTTAGAAAAATTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATATACGAAAGGAGCGGATAC</pcr_primer_p1>
		<pcr_primer_p2>CATATCCTTCTCCAGCTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATATACGAAAGGAGCGGATACCGTAATCTTCGAGCGCCTTGTGAGAGGATCTGAGCAATCCGTCGACTGGTGTACTGATCATTTGGAAGACTACGCCTCGTTTGGATACCGTACACTTTGTTTTGCAGTTCGAAAACTGTCAGATGGAGAGTATGAGCAATGGGCGCCAGAATACAAGAAGGCGATACTGGCAATTGAGAATAGAGCGAAATTGCTGGCAGACGCCGCGGAGAAGCTGGAGAAGGATATG</canonical_amplicon>
		<polymorphic_amplicon>TATATACGAAAGGAGCGGATACCGTAATCTTCGAGCGCCTTGTGAGAGGATCTGAGCAATCCGTCGACTGGTGTACTGATCATTTGGAAGACTACGCCTCGTTTGGATACCGTACACTTTGTTTTGCAGTTCGAAAACTGTCAGATGGAGAGTATGAGCAATGGGCGCCAGAATACAAGAAGGCGATAYTGGCAATTGAGAATAGAGCGAAATTGCTGGCAGACGCCGCGGAGAAGCTGGAGAAGGATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20813</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>242710</contig_pos>
        <strand></strand>
        <context>ATTTCAAGAT[C/T]TTTAGAGCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTTCAAATTAGGCAAAAAATTGACATTTTCAGACCATAGATTTCAAGAT</left_flank>
        <right_flank>TTTAGAGCCAACAATGACATTTTTAGGATCAAAAAAGGGATTTTCCGACA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGCATTTCTATTGCCAAAAAATGAGATTTTTCGGTCTGAATTTGACCTTTTTAGGCTCCAAAATTGAAATTTTTCGAACCAAATTTGACAATTTCCGACTCAAAATTCCGTATTTTAAGGCCCGAATTTGAGATTTTTAAGGACGAAAGTTGGTATTTTTTAGGTCTGAAACTGACATTTCTTTACCCGAATTTGTGACAATTTCAGGTTCAAAAATGGACAATTCTAGAGCCAAAAATTGGTAGTTTTGGGCTCAAAAAAGACGATTCCAGAGTCAAAAATCGGCTGCTTTTTCGGGGTCGGAATTTGACCATTTTTGAGCTTAAAAATTGGATTTACGGGCTCGAAAATTGCAAATTTCCAGCAAATTTCTGAGCTTTTTAGGCCTGAATTTGGCGTTTTTGAGACTTAAAATTGCGATTTTTCAGCCGTAAAATGAGCTTTCTGGACTTCAAATTAGGCAAAAAATTGACATTTTCAGACCATAGATTTCAAGATCTTTAGAGCCAACAATGACATTTTTAGGATCAAAAAAGGGATTTTCCGACACATTTCCAGCTGATTTCCACAGCCAATTTATGCGCTCACCATCATATCAACAGCCTTATCAACCTTCTCCCTCTGAATTTCGATGGCTTTCAATCGACAACTCTCGATTGTGATCTGCTGTAGACTCTGGATCAATTCGATTTTCCGATCAATCGATATTTGATATTTGATCTCGGCTTCCTCGAAATGAACGTAGGTACGCAGAAGACGTTCGTATTCTGTCTCCTGGAACATCTCCTCGATTTTCAGACCCCATGCAAGGGCGCGGCGGAAGTGATTGGGTCTGTGCGGAAATTGTAGTTTGAAGAGATTACTGTAGTTTTGAAGTTTCGAAATTTTCTGGATTACTGTAGTCAGGGATTACTGTAGATTTCCGAGCTTGAAATTAGTTCAAAGGATTACTGTCATTTCAGATATTGAGCTTTTTGGATTTCATGATTACTGTAGATT</canonical>
            <polymorphic>TGGCATTTCTATTGCCAAAAAATGAGATTTTTCGGTCTGAATTTGACCTTTTTAGGCTCCAAAATTGAAATTTTTCGAACCAAATTTGACAATTTCCGACTCAAAATTCCGTATTTTAAGGCCCGAATTTGAGATTTTTAAGGACGAAAGTTGGTATTTTTTAGGTCTGAAACTGACATTTCTTTACCCGAATTTGTGACAATTTCAGGTTCAAAAATGGACAATTCTAGAGCCAAAAATTGGTAGTTTTGGGCTCAAAAAAGACGATTCCAGAGTCAAAAATCGGCTGCTTTTTCGGGGTCGGAATTTGACCATTTTTGAGCTTAAAAATTGGATTTACGGGCTCGAAAATTGCAAATTTCCAGCAAATTTCTGAGCTTTTTAGGCCTGAATTTGGCGTTTTTGAGACTTAAAATTGCGATTTTTCAGCCGTAAAATGAGCTTTCTGGACTTCAAATTAGGCAAAAAATTGACATTTTCAGACCATAGATTTCAAGATYTTTAGAGCCAACAATGACATTTTTAGGATCAAAAAAGGGATTTTCCGACACATTTCCAGCTGATTTCCACAGCCAATTTATGCGCTCACCATCATATCAACAGCCTTATCAACCTTCTCCCTCTGAATTTCGATGGCTTTCAATCGACAACTCTCGATTGTGATCTGCTGTAGACTCTGGATCAATTCGATTTTCCGATCAATCGATATTTGATATTTGATCTCGGCTTCCTCGAAATGAACGTAGGTACGCAGAAGACGTTCGTATTCTGTCTCCTGGAACATCTCCTCGATTTTCAGACCCCATGCAAGGGCGCGGCGGAAGTGATTGGGTCTGTGCGGAAATTGTAGTTTGAAGAGATTACTGTAGTTTTGAAGTTTCGAAATTTTCTGGATTACTGTAGTCAGGGATTACTGTAGATTTCCGAGCTTGAAATTAGTTCAAAGGATTACTGTCATTTCAGATATTGAGCTTTTTGGATTTCATGATTACTGTAGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>496 282 135 30 22 18 17</canonical_bands>
                <polymorphic_bands>526 282 135 22 18 17</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGAGCTTAAAAATTGGATTTA</pcr_primer_p1>
		<pcr_primer_p2>AAATCAGCTGGAAATGTGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGAGCTTAAAAATTGGATTTACGGGCTCGAAAATTGCAAATTTCCAGCAAATTTCTGAGCTTTTTAGGCCTGAATTTGGCGTTTTTGAGACTTAAAATTGCGATTTTTCAGCCGTAAAATGAGCTTTCTGGACTTCAAATTAGGCAAAAAATTGACATTTTCAGACCATAGATTTCAAGATCTTTAGAGCCAACAATGACATTTTTAGGATCAAAAAAGGGATTTTCCGACACATTTCCAGCTGATTT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAGCTTAAAAATTGGATTTACGGGCTCGAAAATTGCAAATTTCCAGCAAATTTCTGAGCTTTTTAGGCCTGAATTTGGCGTTTTTGAGACTTAAAATTGCGATTTTTCAGCCGTAAAATGAGCTTTCTGGACTTCAAATTAGGCAAAAAATTGACATTTTCAGACCATAGATTTCAAGATYTTTAGAGCCAACAATGACATTTTTAGGATCAAAAAAGGGATTTTCCGACACATTTCCAGCTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20814</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>242660</contig_pos>
        <strand></strand>
        <context>AGCTTTCTGG[A/G]CTTCAAATTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTGAGACTTAAAATTGCGATTTTTCAGCCGTAAAATGAGCTTTCTGG</left_flank>
        <right_flank>CTTCAAATTAGGCAAAAAATTGACATTTTCAGACCATAGATTTCAAGATC</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATAGTGGTATTTTCAGGTCCGGAAATTGCAAACTTTCGGCTCAAAATTTGGCATTTCTATTGCCAAAAAATGAGATTTTTCGGTCTGAATTTGACCTTTTTAGGCTCCAAAATTGAAATTTTTCGAACCAAATTTGACAATTTCCGACTCAAAATTCCGTATTTTAAGGCCCGAATTTGAGATTTTTAAGGACGAAAGTTGGTATTTTTTAGGTCTGAAACTGACATTTCTTTACCCGAATTTGTGACAATTTCAGGTTCAAAAATGGACAATTCTAGAGCCAAAAATTGGTAGTTTTGGGCTCAAAAAAGACGATTCCAGAGTCAAAAATCGGCTGCTTTTTCGGGGTCGGAATTTGACCATTTTTGAGCTTAAAAATTGGATTTACGGGCTCGAAAATTGCAAATTTCCAGCAAATTTCTGAGCTTTTTAGGCCTGAATTTGGCGTTTTTGAGACTTAAAATTGCGATTTTTCAGCCGTAAAATGAGCTTTCTGGACTTCAAATTAGGCAAAAAATTGACATTTTCAGACCATAGATTTCAAGATCTTTAGAGCCAACAATGACATTTTTAGGATCAAAAAAGGGATTTTCCGACACATTTCCAGCTGATTTCCACAGCCAATTTATGCGCTCACCATCATATCAACAGCCTTATCAACCTTCTCCCTCTGAATTTCGATGGCTTTCAATCGACAACTCTCGATTGTGATCTGCTGTAGACTCTGGATCAATTCGATTTTCCGATCAATCGATATTTGATATTTGATCTCGGCTTCCTCGAAATGAACGTAGGTACGCAGAAGACGTTCGTATTCTGTCTCCTGGAACATCTCCTCGATTTTCAGACCCCATGCAAGGGCGCGGCGGAAGTGATTGGGTCTGTGCGGAAATTGTAGTTTGAAGAGATTACTGTAGTTTTGAAGTTTCGAAATTTTCTGGATTACTGTAGTCAGGGATTACTGTAGATTTCCGAGCTTGAAATTAGTTCAAAGGATT</canonical>
            <polymorphic>GAATAGTGGTATTTTCAGGTCCGGAAATTGCAAACTTTCGGCTCAAAATTTGGCATTTCTATTGCCAAAAAATGAGATTTTTCGGTCTGAATTTGACCTTTTTAGGCTCCAAAATTGAAATTTTTCGAACCAAATTTGACAATTTCCGACTCAAAATTCCGTATTTTAAGGCCCGAATTTGAGATTTTTAAGGACGAAAGTTGGTATTTTTTAGGTCTGAAACTGACATTTCTTTACCCGAATTTGTGACAATTTCAGGTTCAAAAATGGACAATTCTAGAGCCAAAAATTGGTAGTTTTGGGCTCAAAAAAGACGATTCCAGAGTCAAAAATCGGCTGCTTTTTCGGGGTCGGAATTTGACCATTTTTGAGCTTAAAAATTGGATTTACGGGCTCGAAAATTGCAAATTTCCAGCAAATTTCTGAGCTTTTTAGGCCTGAATTTGGCGTTTTTGAGACTTAAAATTGCGATTTTTCAGCCGTAAAATGAGCTTTCTGGRCTTCAAATTAGGCAAAAAATTGACATTTTCAGACCATAGATTTCAAGATCTTTAGAGCCAACAATGACATTTTTAGGATCAAAAAAGGGATTTTCCGACACATTTCCAGCTGATTTCCACAGCCAATTTATGCGCTCACCATCATATCAACAGCCTTATCAACCTTCTCCCTCTGAATTTCGATGGCTTTCAATCGACAACTCTCGATTGTGATCTGCTGTAGACTCTGGATCAATTCGATTTTCCGATCAATCGATATTTGATATTTGATCTCGGCTTCCTCGAAATGAACGTAGGTACGCAGAAGACGTTCGTATTCTGTCTCCTGGAACATCTCCTCGATTTTCAGACCCCATGCAAGGGCGCGGCGGAAGTGATTGGGTCTGTGCGGAAATTGTAGTTTGAAGAGATTACTGTAGTTTTGAAGTTTCGAAATTTTCTGGATTACTGTAGTCAGGGATTACTGTAGATTTCCGAGCTTGAAATTAGTTCAAAGGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>256 213 176 159 60 48 43 24 21</canonical_bands>
                <polymorphic_bands>256 224 213 159 60 43 24 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGAGCTTAAAAATTGGATTTA</pcr_primer_p1>
		<pcr_primer_p2>AAATCAGCTGGAAATGTGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGAGCTTAAAAATTGGATTTACGGGCTCGAAAATTGCAAATTTCCAGCAAATTTCTGAGCTTTTTAGGCCTGAATTTGGCGTTTTTGAGACTTAAAATTGCGATTTTTCAGCCGTAAAATGAGCTTTCTGGACTTCAAATTAGGCAAAAAATTGACATTTTCAGACCATAGATTTCAAGATCTTTAGAGCCAACAATGACATTTTTAGGATCAAAAAAGGGATTTTCCGACACATTTCCAGCTGATTT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAGCTTAAAAATTGGATTTACGGGCTCGAAAATTGCAAATTTCCAGCAAATTTCTGAGCTTTTTAGGCCTGAATTTGGCGTTTTTGAGACTTAAAATTGCGATTTTTCAGCCGTAAAATGAGCTTTCTGGRCTTCAAATTAGGCAAAAAATTGACATTTTCAGACCATAGATTTCAAGATCTTTAGAGCCAACAATGACATTTTTAGGATCAAAAAAGGGATTTTCCGACACATTTCCAGCTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20815</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>268715</contig_pos>
        <strand></strand>
        <context>AATTCAAAAA[T/C]ACAGTAAGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGTCAAATTTTGCAGGAAATTCAATTTTCTCGATTAGAACAATTCAAAAA</left_flank>
        <right_flank>ACAGTAAGACACAGAAAATTAGAATTGTCGTAAAGTTTGATGTTTCGTCC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAATTACCCCACCGAACCAAATTTCAGCTCTCTATCTCAATGTGTCGTAAGATTCTATGTTTGGTCCGCAAACACCAAGTTACAGTACCCCACCAAATTTAAAGCTACAGATTCAAAAAACAATGTTTTAGGAGTGAAATTTTGCGAGAAAGTCGATTTTCGAAGTTAGAACAGTTAAAAAACACAGTAAAACCGAAAATTTTCGAATTGTCGTAAAATTTGATGTTTCGTCTGCAAACACTGAAAACCGCTATTTTCGCCTCAAAAAAACCAACTTTCTTGGGTGGAATTTCGCGGGGATTTCGATTTTCGGAGTCAGAACTCATTACTACTACTAAACTACCGTAAGACTAAGAAACTTGCAACTATTCAAATTGTCGTAAGATCTGATGTTTTGTCTGTAAACACGGAAAATCGGTTTATGAAGCTCGAACCGGCGACTTTTCAGAGTCAAATTTTGCAGGAAATTCAATTTTCTCGATTAGAACAATTCAAAAATACAGTAAGACACAGAAAATTAGAATTGTCGTAAAGTTTGATGTTTCGTCCGTGAACACCAAAACCGGGGTTTGGGTCTCAAAAAAGCGATTCACTAGAGTGAAGTTTTGCGGGAAATTCGAATTTCAGGGTTAGAATTTGTCAAAATTACAGTAAGATACCAAAAACTCAAATTGTCGTAAAATGTGATGTTTTGTCCGTAAACACGGAAAACCGAGGTAGCCGTATCAAAAAAAGTTACTTCCCGAGGTGAAAATTTGCGGGAAATTTGATTTTCCGCATTGAAAGACTTCAAAACTACAGTAAGACATCGAAAATTCAAAATGTCGTAAAATGTGATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTCAAATAAGGGAATTTCTAGGCTGAAATTTTGCGGGGAATTCGATTTTCGAAGTTAGAACAGTGGAAAACTACCGTAAGACACAGAAAATTCAAATTGTCGTAAAATGTTATGTTTTGTCCGTA</canonical>
            <polymorphic>CCAATTACCCCACCGAACCAAATTTCAGCTCTCTATCTCAATGTGTCGTAAGATTCTATGTTTGGTCCGCAAACACCAAGTTACAGTACCCCACCAAATTTAAAGCTACAGATTCAAAAAACAATGTTTTAGGAGTGAAATTTTGCGAGAAAGTCGATTTTCGAAGTTAGAACAGTTAAAAAACACAGTAAAACCGAAAATTTTCGAATTGTCGTAAAATTTGATGTTTCGTCTGCAAACACTGAAAACCGCTATTTTCGCCTCAAAAAAACCAACTTTCTTGGGTGGAATTTCGCGGGGATTTCGATTTTCGGAGTCAGAACTCATTACTACTACTAAACTACCGTAAGACTAAGAAACTTGCAACTATTCAAATTGTCGTAAGATCTGATGTTTTGTCTGTAAACACGGAAAATCGGTTTATGAAGCTCGAACCGGCGACTTTTCAGAGTCAAATTTTGCAGGAAATTCAATTTTCTCGATTAGAACAATTCAAAAAYACAGTAAGACACAGAAAATTAGAATTGTCGTAAAGTTTGATGTTTCGTCCGTGAACACCAAAACCGGGGTTTGGGTCTCAAAAAAGCGATTCACTAGAGTGAAGTTTTGCGGGAAATTCGAATTTCAGGGTTAGAATTTGTCAAAATTACAGTAAGATACCAAAAACTCAAATTGTCGTAAAATGTGATGTTTTGTCCGTAAACACGGAAAACCGAGGTAGCCGTATCAAAAAAAGTTACTTCCCGAGGTGAAAATTTGCGGGAAATTTGATTTTCCGCATTGAAAGACTTCAAAACTACAGTAAGACATCGAAAATTCAAAATGTCGTAAAATGTGATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTCAAATAAGGGAATTTCTAGGCTGAAATTTTGCGGGGAATTCGATTTTCGAAGTTAGAACAGTGGAAAACTACCGTAAGACACAGAAAATTCAAATTGTCGTAAAATGTTATGTTTTGTCCGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCTGTAAACACGGAAAATC</pcr_primer_p1>
		<pcr_primer_p2>TGACAAATTCTAACCCTGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGTCTGTAAACACGGAAAATCGGTTTATGAAGCTCGAACCGGCGACTTTTCAGAGTCAAATTTTGCAGGAAATTCAATTTTCTCGATTAGAACAATTCAAAAATACAGTAAGACACAGAAAATTAGAATTGTCGTAAAGTTTGATGTTTCGTCCGTGAACACCAAAACCGGGGTTTGGGTCTCAAAAAAGCGATTCACTAGAGTGAAGTTTTGCGGGAAATTCGAATTTCAGGGTTAGAATTTGTCA</canonical_amplicon>
		<polymorphic_amplicon>TGTCTGTAAACACGGAAAATCGGTTTATGAAGCTCGAACCGGCGACTTTTCAGAGTCAAATTTTGCAGGAAATTCAATTTTCTCGATTAGAACAATTCAAAAAYACAGTAAGACACAGAAAATTAGAATTGTCGTAAAGTTTGATGTTTCGTCCGTGAACACCAAAACCGGGGTTTGGGTCTCAAAAAAGCGATTCACTAGAGTGAAGTTTTGCGGGAAATTCGAATTTCAGGGTTAGAATTTGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20816</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>268768</contig_pos>
        <strand></strand>
        <context>TTTCGTCCGT[G/A]AACACCAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGTAAGACACAGAAAATTAGAATTGTCGTAAAGTTTGATGTTTCGTCCGT</left_flank>
        <right_flank>AACACCAAAACCGGGGTTTGGGTCTCAAAAAAGCGATTCACTAGAGTGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTATGTTTGGTCCGCAAACACCAAGTTACAGTACCCCACCAAATTTAAAGCTACAGATTCAAAAAACAATGTTTTAGGAGTGAAATTTTGCGAGAAAGTCGATTTTCGAAGTTAGAACAGTTAAAAAACACAGTAAAACCGAAAATTTTCGAATTGTCGTAAAATTTGATGTTTCGTCTGCAAACACTGAAAACCGCTATTTTCGCCTCAAAAAAACCAACTTTCTTGGGTGGAATTTCGCGGGGATTTCGATTTTCGGAGTCAGAACTCATTACTACTACTAAACTACCGTAAGACTAAGAAACTTGCAACTATTCAAATTGTCGTAAGATCTGATGTTTTGTCTGTAAACACGGAAAATCGGTTTATGAAGCTCGAACCGGCGACTTTTCAGAGTCAAATTTTGCAGGAAATTCAATTTTCTCGATTAGAACAATTCAAAAATACAGTAAGACACAGAAAATTAGAATTGTCGTAAAGTTTGATGTTTCGTCCGTGAACACCAAAACCGGGGTTTGGGTCTCAAAAAAGCGATTCACTAGAGTGAAGTTTTGCGGGAAATTCGAATTTCAGGGTTAGAATTTGTCAAAATTACAGTAAGATACCAAAAACTCAAATTGTCGTAAAATGTGATGTTTTGTCCGTAAACACGGAAAACCGAGGTAGCCGTATCAAAAAAAGTTACTTCCCGAGGTGAAAATTTGCGGGAAATTTGATTTTCCGCATTGAAAGACTTCAAAACTACAGTAAGACATCGAAAATTCAAAATGTCGTAAAATGTGATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTCAAATAAGGGAATTTCTAGGCTGAAATTTTGCGGGGAATTCGATTTTCGAAGTTAGAACAGTGGAAAACTACCGTAAGACACAGAAAATTCAAATTGTCGTAAAATGTTATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTCAAATAAGGGAATTTCTAGGCTGAAAT</canonical>
            <polymorphic>TTCTATGTTTGGTCCGCAAACACCAAGTTACAGTACCCCACCAAATTTAAAGCTACAGATTCAAAAAACAATGTTTTAGGAGTGAAATTTTGCGAGAAAGTCGATTTTCGAAGTTAGAACAGTTAAAAAACACAGTAAAACCGAAAATTTTCGAATTGTCGTAAAATTTGATGTTTCGTCTGCAAACACTGAAAACCGCTATTTTCGCCTCAAAAAAACCAACTTTCTTGGGTGGAATTTCGCGGGGATTTCGATTTTCGGAGTCAGAACTCATTACTACTACTAAACTACCGTAAGACTAAGAAACTTGCAACTATTCAAATTGTCGTAAGATCTGATGTTTTGTCTGTAAACACGGAAAATCGGTTTATGAAGCTCGAACCGGCGACTTTTCAGAGTCAAATTTTGCAGGAAATTCAATTTTCTCGATTAGAACAATTCAAAAATACAGTAAGACACAGAAAATTAGAATTGTCGTAAAGTTTGATGTTTCGTCCGTRAACACCAAAACCGGGGTTTGGGTCTCAAAAAAGCGATTCACTAGAGTGAAGTTTTGCGGGAAATTCGAATTTCAGGGTTAGAATTTGTCAAAATTACAGTAAGATACCAAAAACTCAAATTGTCGTAAAATGTGATGTTTTGTCCGTAAACACGGAAAACCGAGGTAGCCGTATCAAAAAAAGTTACTTCCCGAGGTGAAAATTTGCGGGAAATTTGATTTTCCGCATTGAAAGACTTCAAAACTACAGTAAGACATCGAAAATTCAAAATGTCGTAAAATGTGATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTCAAATAAGGGAATTTCTAGGCTGAAATTTTGCGGGGAATTCGATTTTCGAAGTTAGAACAGTGGAAAACTACCGTAAGACACAGAAAATTCAAATTGTCGTAAAATGTTATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTCAAATAAGGGAATTTCTAGGCTGAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>121 103 86 86 85 56 49 48 46 46 46 44 42 36 22 18 18 18 18 8 4</canonical_bands>
                <polymorphic_bands>121 103 86 86 85 56 49 48 46 46 46 46 44 36 22 18 18 18 18 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTCTGTAAACACGGAAAATC</pcr_primer_p1>
		<pcr_primer_p2>TGACAAATTCTAACCCTGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGTCTGTAAACACGGAAAATCGGTTTATGAAGCTCGAACCGGCGACTTTTCAGAGTCAAATTTTGCAGGAAATTCAATTTTCTCGATTAGAACAATTCAAAAATACAGTAAGACACAGAAAATTAGAATTGTCGTAAAGTTTGATGTTTCGTCCGTGAACACCAAAACCGGGGTTTGGGTCTCAAAAAAGCGATTCACTAGAGTGAAGTTTTGCGGGAAATTCGAATTTCAGGGTTAGAATTTGTCA</canonical_amplicon>
		<polymorphic_amplicon>TGTCTGTAAACACGGAAAATCGGTTTATGAAGCTCGAACCGGCGACTTTTCAGAGTCAAATTTTGCAGGAAATTCAATTTTCTCGATTAGAACAATTCAAAAATACAGTAAGACACAGAAAATTAGAATTGTCGTAAAGTTTGATGTTTCGTCCGTRAACACCAAAACCGGGGTTTGGGTCTCAAAAAAGCGATTCACTAGAGTGAAGTTTTGCGGGAAATTCGAATTTCAGGGTTAGAATTTGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20818</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>268819</contig_pos>
        <strand>+</strand>
        <context>CTAGAGTGAA[A/G]TTTTGCGGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACACCAAAACCGGGGTTTGGGTCTCAAAAAAGCGATTCACTAGAGTGAA</left_flank>
        <right_flank>TTTTGCGGGAAATTCGAATTTCAGGGTTAGAATTTGTCAAAATTACAGTA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTACAGATTCAAAAAACAATGTTTTAGGAGTGAAATTTTGCGAGAAAGTCGATTTTCGAAGTTAGAACAGTTAAAAAACACAGTAAAACCGAAAATTTTCGAATTGTCGTAAAATTTGATGTTTCGTCTGCAAACACTGAAAACCGCTATTTTCGCCTCAAAAAAACCAACTTTCTTGGGTGGAATTTCGCGGGGATTTCGATTTTCGGAGTCAGAACTCATTACTACTACTAAACTACCGTAAGACTAAGAAACTTGCAACTATTCAAATTGTCGTAAGATCTGATGTTTTGTCTGTAAACACGGAAAATCGGTTTATGAAGCTCGAACCGGCGACTTTTCAGAGTCAAATTTTGCAGGAAATTCAATTTTCTCGATTAGAACAATTCAAAAATACAGTAAGACACAGAAAATTAGAATTGTCGTAAAGTTTGATGTTTCGTCCGTGAACACCAAAACCGGGGTTTGGGTCTCAAAAAAGCGATTCACTAGAGTGAAGTTTTGCGGGAAATTCGAATTTCAGGGTTAGAATTTGTCAAAATTACAGTAAGATACCAAAAACTCAAATTGTCGTAAAATGTGATGTTTTGTCCGTAAACACGGAAAACCGAGGTAGCCGTATCAAAAAAAGTTACTTCCCGAGGTGAAAATTTGCGGGAAATTTGATTTTCCGCATTGAAAGACTTCAAAACTACAGTAAGACATCGAAAATTCAAAATGTCGTAAAATGTGATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTCAAATAAGGGAATTTCTAGGCTGAAATTTTGCGGGGAATTCGATTTTCGAAGTTAGAACAGTGGAAAACTACCGTAAGACACAGAAAATTCAAATTGTCGTAAAATGTTATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTCAAATAAGGGAATTTCTAGGCTGAAATTTTGCGGGGAATTCGATTTTCGAAGTTAGAACAGTGGAAAACTACCGTAAG</canonical>
            <polymorphic>GCTACAGATTCAAAAAACAATGTTTTAGGAGTGAAATTTTGCGAGAAAGTCGATTTTCGAAGTTAGAACAGTTAAAAAACACAGTAAAACCGAAAATTTTCGAATTGTCGTAAAATTTGATGTTTCGTCTGCAAACACTGAAAACCGCTATTTTCGCCTCAAAAAAACCAACTTTCTTGGGTGGAATTTCGCGGGGATTTCGATTTTCGGAGTCAGAACTCATTACTACTACTAAACTACCGTAAGACTAAGAAACTTGCAACTATTCAAATTGTCGTAAGATCTGATGTTTTGTCTGTAAACACGGAAAATCGGTTTATGAAGCTCGAACCGGCGACTTTTCAGAGTCAAATTTTGCAGGAAATTCAATTTTCTCGATTAGAACAATTCAAAAATACAGTAAGACACAGAAAATTAGAATTGTCGTAAAGTTTGATGTTTCGTCCGTGAACACCAAAACCGGGGTTTGGGTCTCAAAAAAGCGATTCACTAGAGTGAARTTTTGCGGGAAATTCGAATTTCAGGGTTAGAATTTGTCAAAATTACAGTAAGATACCAAAAACTCAAATTGTCGTAAAATGTGATGTTTTGTCCGTAAACACGGAAAACCGAGGTAGCCGTATCAAAAAAAGTTACTTCCCGAGGTGAAAATTTGCGGGAAATTTGATTTTCCGCATTGAAAGACTTCAAAACTACAGTAAGACATCGAAAATTCAAAATGTCGTAAAATGTGATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTCAAATAAGGGAATTTCTAGGCTGAAATTTTGCGGGGAATTCGATTTTCGAAGTTAGAACAGTGGAAAACTACCGTAAGACACAGAAAATTCAAATTGTCGTAAAATGTTATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTCAAATAAGGGAATTTCTAGGCTGAAATTTTGCGGGGAATTCGATTTTCGAAGTTAGAACAGTGGAAAACTACCGTAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGAAAATTAGAATTGTCGTAAA</pcr_primer_p1>
		<pcr_primer_p2>AATTTTCACCTCGGGAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACAGAAAATTAGAATTGTCGTAAAGTTTGATGTTTCGTCCGTGAACACCAAAACCGGGGTTTGGGTCTCAAAAAAGCGATTCACTAGAGTGAAGTTTTGCGGGAAATTCGAATTTCAGGGTTAGAATTTGTCAAAATTACAGTAAGATACCAAAAACTCAAATTGTCGTAAAATGTGATGTTTTGTCCGTAAACACGGAAAACCGAGGTAGCCGTATCAAAAAAAGTTACTTCCCGAGGTGAAAATT</canonical_amplicon>
		<polymorphic_amplicon>ACAGAAAATTAGAATTGTCGTAAAGTTTGATGTTTCGTCCGTGAACACCAAAACCGGGGTTTGGGTCTCAAAAAAGCGATTCACTAGAGTGAARTTTTGCGGGAAATTCGAATTTCAGGGTTAGAATTTGTCAAAATTACAGTAAGATACCAAAAACTCAAATTGTCGTAAAATGTGATGTTTTGTCCGTAAACACGGAAAACCGAGGTAGCCGTATCAAAAAAAGTTACTTCCCGAGGTGAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20819</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>268916</contig_pos>
        <strand></strand>
        <context>ttttgtccgt[A/G]aacacGGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTAAGATACCAAAAACTCAAATTGTCGTAAAATGTGATGTTTTGTCCGT</left_flank>
        <right_flank>AACACGGAAAACCGAGGTAGCCGTATCAAAAAAAGTTACTTCCCGAGGTG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGAATTGTCGTAAAATTTGATGTTTCGTCTGCAAACACTGAAAACCGCTATTTTCGCCTCAAAAAAACCAACTTTCTTGGGTGGAATTTCGCGGGGATTTCGATTTTCGGAGTCAGAACTCATTACTACTACTAAACTACCGTAAGACTAAGAAACTTGCAACTATTCAAATTGTCGTAAGATCTGATGTTTTGTCTGTAAACACGGAAAATCGGTTTATGAAGCTCGAACCGGCGACTTTTCAGAGTCAAATTTTGCAGGAAATTCAATTTTCTCGATTAGAACAATTCAAAAATACAGTAAGACACAGAAAATTAGAATTGTCGTAAAGTTTGATGTTTCGTCCGTGAACACCAAAACCGGGGTTTGGGTCTCAAAAAAGCGATTCACTAGAGTGAAGTTTTGCGGGAAATTCGAATTTCAGGGTTAGAATTTGTCAAAATTACAGTAAGATACCAAAAACTCAAATTGTCGTAAAATGTGATGTTTTGTCCGTAAACACGGAAAACCGAGGTAGCCGTATCAAAAAAAGTTACTTCCCGAGGTGAAAATTTGCGGGAAATTTGATTTTCCGCATTGAAAGACTTCAAAACTACAGTAAGACATCGAAAATTCAAAATGTCGTAAAATGTGATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTCAAATAAGGGAATTTCTAGGCTGAAATTTTGCGGGGAATTCGATTTTCGAAGTTAGAACAGTGGAAAACTACCGTAAGACACAGAAAATTCAAATTGTCGTAAAATGTTATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTCAAATAAGGGAATTTCTAGGCTGAAATTTTGCGGGGAATTCGATTTTCGAAGTTAGAACAGTGGAAAACTACCGTAAGACACAGAAAATTCAAATTGTCGTAAAATGTTATGTTTTGTCCGTAAACACGGAATATCGTTGTTTTAGGCTAAGAAACCGGGGTTGAGTCTCAAAAA</canonical>
            <polymorphic>TTTCGAATTGTCGTAAAATTTGATGTTTCGTCTGCAAACACTGAAAACCGCTATTTTCGCCTCAAAAAAACCAACTTTCTTGGGTGGAATTTCGCGGGGATTTCGATTTTCGGAGTCAGAACTCATTACTACTACTAAACTACCGTAAGACTAAGAAACTTGCAACTATTCAAATTGTCGTAAGATCTGATGTTTTGTCTGTAAACACGGAAAATCGGTTTATGAAGCTCGAACCGGCGACTTTTCAGAGTCAAATTTTGCAGGAAATTCAATTTTCTCGATTAGAACAATTCAAAAATACAGTAAGACACAGAAAATTAGAATTGTCGTAAAGTTTGATGTTTCGTCCGTGAACACCAAAACCGGGGTTTGGGTCTCAAAAAAGCGATTCACTAGAGTGAAGTTTTGCGGGAAATTCGAATTTCAGGGTTAGAATTTGTCAAAATTACAGTAAGATACCAAAAACTCAAATTGTCGTAAAATGTGATGTTTTGTCCGTRAACACGGAAAACCGAGGTAGCCGTATCAAAAAAAGTTACTTCCCGAGGTGAAAATTTGCGGGAAATTTGATTTTCCGCATTGAAAGACTTCAAAACTACAGTAAGACATCGAAAATTCAAAATGTCGTAAAATGTGATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTCAAATAAGGGAATTTCTAGGCTGAAATTTTGCGGGGAATTCGATTTTCGAAGTTAGAACAGTGGAAAACTACCGTAAGACACAGAAAATTCAAATTGTCGTAAAATGTTATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTCAAATAAGGGAATTTCTAGGCTGAAATTTTGCGGGGAATTCGATTTTCGAAGTTAGAACAGTGGAAAACTACCGTAAGACACAGAAAATTCAAATTGTCGTAAAATGTTATGTTTTGTCCGTAAACACGGAATATCGTTGTTTTAGGCTAAGAAACCGGGGTTGAGTCTCAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTCAAAATTACAGTAAGATACCA</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCCCTTATTTGAGCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TTGTCAAAATTACAGTAAGATACCAAAAACTCAAATTGTCGTAAAATGTGATGTTTTGTCCGTAAACACGGAAAACCGAGGTAGCCGTATCAAAAAAAGTTACTTCCCGAGGTGAAAATTTGCGGGAAATTTGATTTTCCGCATTGAAAGACTTCAAAACTACAGTAAGACATCGAAAATTCAAAATGTCGTAAAATGTGATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTCAAATAAGGGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>TTGTCAAAATTACAGTAAGATACCAAAAACTCAAATTGTCGTAAAATGTGATGTTTTGTCCGTRAACACGGAAAACCGAGGTAGCCGTATCAAAAAAAGTTACTTCCCGAGGTGAAAATTTGCGGGAAATTTGATTTTCCGCATTGAAAGACTTCAAAACTACAGTAAGACATCGAAAATTCAAAATGTCGTAAAATGTGATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTCAAATAAGGGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20820</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>268950</contig_pos>
        <strand>+</strand>
        <context>TATCAAAAAA[A/C]GTTACTTCCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTGATGTTTTGTCCGTAAACACGGAAAACCGAGGTAGCCGTATCAAAAAA</left_flank>
        <right_flank>GTTACTTCCCGAGGTGAAAATTTGCGGGAAATTTGATTTTCCGCATTGAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAACACTGAAAACCGCTATTTTCGCCTCAAAAAAACCAACTTTCTTGGGTGGAATTTCGCGGGGATTTCGATTTTCGGAGTCAGAACTCATTACTACTACTAAACTACCGTAAGACTAAGAAACTTGCAACTATTCAAATTGTCGTAAGATCTGATGTTTTGTCTGTAAACACGGAAAATCGGTTTATGAAGCTCGAACCGGCGACTTTTCAGAGTCAAATTTTGCAGGAAATTCAATTTTCTCGATTAGAACAATTCAAAAATACAGTAAGACACAGAAAATTAGAATTGTCGTAAAGTTTGATGTTTCGTCCGTGAACACCAAAACCGGGGTTTGGGTCTCAAAAAAGCGATTCACTAGAGTGAAGTTTTGCGGGAAATTCGAATTTCAGGGTTAGAATTTGTCAAAATTACAGTAAGATACCAAAAACTCAAATTGTCGTAAAATGTGATGTTTTGTCCGTAAACACGGAAAACCGAGGTAGCCGTATCAAAAAAAGTTACTTCCCGAGGTGAAAATTTGCGGGAAATTTGATTTTCCGCATTGAAAGACTTCAAAACTACAGTAAGACATCGAAAATTCAAAATGTCGTAAAATGTGATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTCAAATAAGGGAATTTCTAGGCTGAAATTTTGCGGGGAATTCGATTTTCGAAGTTAGAACAGTGGAAAACTACCGTAAGACACAGAAAATTCAAATTGTCGTAAAATGTTATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTCAAATAAGGGAATTTCTAGGCTGAAATTTTGCGGGGAATTCGATTTTCGAAGTTAGAACAGTGGAAAACTACCGTAAGACACAGAAAATTCAAATTGTCGTAAAATGTTATGTTTTGTCCGTAAACACGGAATATCGTTGTTTTAGGCTAAGAAACCGGGGTTGAGTCTCAAAAAGCCATTTTCTAGGATGAAATTTCGCGAGAAACTC</canonical>
            <polymorphic>CAAACACTGAAAACCGCTATTTTCGCCTCAAAAAAACCAACTTTCTTGGGTGGAATTTCGCGGGGATTTCGATTTTCGGAGTCAGAACTCATTACTACTACTAAACTACCGTAAGACTAAGAAACTTGCAACTATTCAAATTGTCGTAAGATCTGATGTTTTGTCTGTAAACACGGAAAATCGGTTTATGAAGCTCGAACCGGCGACTTTTCAGAGTCAAATTTTGCAGGAAATTCAATTTTCTCGATTAGAACAATTCAAAAATACAGTAAGACACAGAAAATTAGAATTGTCGTAAAGTTTGATGTTTCGTCCGTGAACACCAAAACCGGGGTTTGGGTCTCAAAAAAGCGATTCACTAGAGTGAAGTTTTGCGGGAAATTCGAATTTCAGGGTTAGAATTTGTCAAAATTACAGTAAGATACCAAAAACTCAAATTGTCGTAAAATGTGATGTTTTGTCCGTAAACACGGAAAACCGAGGTAGCCGTATCAAAAAAMGTTACTTCCCGAGGTGAAAATTTGCGGGAAATTTGATTTTCCGCATTGAAAGACTTCAAAACTACAGTAAGACATCGAAAATTCAAAATGTCGTAAAATGTGATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTCAAATAAGGGAATTTCTAGGCTGAAATTTTGCGGGGAATTCGATTTTCGAAGTTAGAACAGTGGAAAACTACCGTAAGACACAGAAAATTCAAATTGTCGTAAAATGTTATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTCAAATAAGGGAATTTCTAGGCTGAAATTTTGCGGGGAATTCGATTTTCGAAGTTAGAACAGTGGAAAACTACCGTAAGACACAGAAAATTCAAATTGTCGTAAAATGTTATGTTTTGTCCGTAAACACGGAATATCGTTGTTTTAGGCTAAGAAACCGGGGTTGAGTCTCAAAAAGCCATTTTCTAGGATGAAATTTCGCGAGAAACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTCAAAATTACAGTAAGATACCA</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCCCTTATTTGAGCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TTGTCAAAATTACAGTAAGATACCAAAAACTCAAATTGTCGTAAAATGTGATGTTTTGTCCGTAAACACGGAAAACCGAGGTAGCCGTATCAAAAAAAGTTACTTCCCGAGGTGAAAATTTGCGGGAAATTTGATTTTCCGCATTGAAAGACTTCAAAACTACAGTAAGACATCGAAAATTCAAAATGTCGTAAAATGTGATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTCAAATAAGGGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>TTGTCAAAATTACAGTAAGATACCAAAAACTCAAATTGTCGTAAAATGTGATGTTTTGTCCGTAAACACGGAAAACCGAGGTAGCCGTATCAAAAAAMGTTACTTCCCGAGGTGAAAATTTGCGGGAAATTTGATTTTCCGCATTGAAAGACTTCAAAACTACAGTAAGACATCGAAAATTCAAAATGTCGTAAAATGTGATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTCAAATAAGGGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20821</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>269052</contig_pos>
        <strand></strand>
        <context>cgtaaaatgt[G/T]atgttttgtc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GACTTCAAAACTACAGTAAGACATCGAAAATTCAAAATGTCGTAAAATGT</left_flank>
        <right_flank>ATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTCAAATAAGGG</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTACCGTAAGACTAAGAAACTTGCAACTATTCAAATTGTCGTAAGATCTGATGTTTTGTCTGTAAACACGGAAAATCGGTTTATGAAGCTCGAACCGGCGACTTTTCAGAGTCAAATTTTGCAGGAAATTCAATTTTCTCGATTAGAACAATTCAAAAATACAGTAAGACACAGAAAATTAGAATTGTCGTAAAGTTTGATGTTTCGTCCGTGAACACCAAAACCGGGGTTTGGGTCTCAAAAAAGCGATTCACTAGAGTGAAGTTTTGCGGGAAATTCGAATTTCAGGGTTAGAATTTGTCAAAATTACAGTAAGATACCAAAAACTCAAATTGTCGTAAAATGTGATGTTTTGTCCGTAAACACGGAAAACCGAGGTAGCCGTATCAAAAAAAGTTACTTCCCGAGGTGAAAATTTGCGGGAAATTTGATTTTCCGCATTGAAAGACTTCAAAACTACAGTAAGACATCGAAAATTCAAAATGTCGTAAAATGTGATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTCAAATAAGGGAATTTCTAGGCTGAAATTTTGCGGGGAATTCGATTTTCGAAGTTAGAACAGTGGAAAACTACCGTAAGACACAGAAAATTCAAATTGTCGTAAAATGTTATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTCAAATAAGGGAATTTCTAGGCTGAAATTTTGCGGGGAATTCGATTTTCGAAGTTAGAACAGTGGAAAACTACCGTAAGACACAGAAAATTCAAATTGTCGTAAAATGTTATGTTTTGTCCGTAAACACGGAATATCGTTGTTTTAGGCTAAGAAACCGGGGTTGAGTCTCAAAAAGCCATTTTCTAGGATGAAATTTCGCGAGAAACTCGATTTTCGGGGTTTGAACTCTTCAAAATGTCAAAATGACCGTAATATTGAGCATTTCCTGAATGCGATTTCCCATTTTTCCGCCGAATCCTCTCACATCTCC</canonical>
            <polymorphic>AAACTACCGTAAGACTAAGAAACTTGCAACTATTCAAATTGTCGTAAGATCTGATGTTTTGTCTGTAAACACGGAAAATCGGTTTATGAAGCTCGAACCGGCGACTTTTCAGAGTCAAATTTTGCAGGAAATTCAATTTTCTCGATTAGAACAATTCAAAAATACAGTAAGACACAGAAAATTAGAATTGTCGTAAAGTTTGATGTTTCGTCCGTGAACACCAAAACCGGGGTTTGGGTCTCAAAAAAGCGATTCACTAGAGTGAAGTTTTGCGGGAAATTCGAATTTCAGGGTTAGAATTTGTCAAAATTACAGTAAGATACCAAAAACTCAAATTGTCGTAAAATGTKATGTTTTGTCCGTAAACACGGAAAACCGAGGTAGCCGTATCAAAAAAAGTTACTTCCCGAGGTGAAAATTTGCGGGAAATTTGATTTTCCGCATTGAAAGACTTCAAAACTACAGTAAGACATCGAAAATTCAAAATGTCGTAAAATGTGATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTCAAATAAGGGAATTTCTAGGCTGAAATTTTGCGGGGAATTCGATTTTCGAAGTTAGAACAGTGGAAAACTACCGTAAGACACAGAAAATTCAAATTGTCGTAAAATGTTATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTCAAATAAGGGAATTTCTAGGCTGAAATTTTGCGGGGAATTCGATTTTCGAAGTTAGAACAGTGGAAAACTACCGTAAGACACAGAAAATTCAAATTGTCGTAAAATGTTATGTTTTGTCCGTAAACACGGAATATCGTTGTTTTAGGCTAAGAAACCGGGGTTGAGTCTCAAAAAGCCATTTTCTAGGATGAAATTTCGCGAGAAACTCGATTTTCGGGGTTTGAACTCTTCAAAATGTCAAAATGACCGTAATATTGAGCATTTCCTGAATGCGATTTCCCATTTTTCCGCCGAATCCTCTCACATCTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>177 103 86 86 85 85 71 46 46 46 42 36 18 18 18 18 8 7 4</canonical_bands>
                <polymorphic_bands>177 104 103 86 85 85 71 46 46 46 42 36 18 18 18 8 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCATTGAAAGACTTCAAAACTAC</pcr_primer_p1>
		<pcr_primer_p2>GAGCTTTAAACAACGGTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCATTGAAAGACTTCAAAACTACAGTAAGACATCGAAAATTCAAAATGTCGTAAAATGTGATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTC</canonical_amplicon>
		<polymorphic_amplicon>GCATTGAAAGACTTCAAAACTACAGTAAGACATCGAAAATTCAAAATGTCGTAAAATGTGATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20903</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>271118</contig_pos>
        <strand></strand>
        <context>ctccagaagc[T/A]tttttcagct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATACAACGTTTAGAGAGCGTTTCTGGAAGCCTCCAGAAAGCTCCAGAAGC</left_flank>
        <right_flank>TTTTTCAGCTTCAGAAGCTTCGAGATCCTCTAAAGCAGCTTTTGGCCGGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGTTGAGCACTCGGAACACTTCAGCACTGGCATCTCTGCGAAATTTAGCTTTTTTTATGGGTTTCAAGGCCTTAAACTTGATTTTCAAGCAATTTTTGGGCTCCGGAAGCTTCCAGAACCCCTAAAACAGCTTTTGGGCGATTTTGGACTTACAAATCGGATTTTTTGACAATTTTTGAGTTTTTAGGCATAATTATGAGAAAAACTTAGTTTTGGAAGGTATTTTCTGAAGATTTTCATTGAAAATTTGCATTTAAAAGGTTCCAAAATGTTCCAGAAGCGCTATATGCATTTTTTACATTTATACAGGCATTGTTCAGGGTTTCTGGCGACTTTTATGTTTTGGAAGCGTCTAGAAAGCTCCAGAACGACTTTTCAGCGGTTCTTCGGGCAGTTTTTGAGGATATTTATTGAAAAATTTGATTCTAAAATGTTCTAGATGCTCTATACAACGTTTAGAGAGCGTTTCTGGAAGCCTCCAGAAAGCTCCAGAAGCTTTTTTCAGCTTCAGAAGCTTCGAGATCCTCTAAAGCAGCTTTTGGCCGGATTTTTATGGAAAAATTGGTTTTAAACCGTTCCGGAATGCTCTAGAATGAATTTTTGAATCCGAATTATACTTCTCTAAAACAGCTTTTGGCCGGTTTTTATGCCATTTTTATTGAAAAATTGCTTCAAGAATGTTCTAGAAGCGGTATCTATGATTTTTGGTGTTTTTTAGGTTCTGGAAGCTTCTAGGAAGCTCCATGAGCATTTTTTCGGCTTCAGAAGCTTCTAGAGCTTCTGAAACAGCTTTTTAAGCCATTTTTAAGGACTTTTTAATGGTAAATTTGCTTCTAGAATGGTCTAGAAGCGCTATACAAACTTTAAAAGTCAAATTATACTTTTAAAGGCATTTTTCGAGGTATCTCTCAATTTCTAGGATTTTGAGCTTCTGGAAGCTTCTAGACAGCTCCAGAAAGCTCCAGAATTTTCCCAGCACCCCACACACCGATATTTT</canonical>
            <polymorphic>AATTGTTGAGCACTCGGAACACTTCAGCACTGGCATCTCTGCGAAATTTAGCTTTTTTTATGGGTTTCAAGGCCTTAAACTTGATTTTCAAGCAATTTTTGGGCTCCGGAAGCTTCCAGAACCCCTAAAACAGCTTTTGGGCGATTTTGGACTTACAAATCGGATTTTTTGACAATTTTTGAGTTTTTAGGCATAATTATGAGAAAAACTTAGTTTTGGAAGGTATTTTCTGAAGATTTTCATTGAAAATTTGCATTTAAAAGGTTCCAAAATGTTCCAGAAGCGCTATATGCATTTTTTACATTTATACAGGCATTGTTCAGGGTTTCTGGCGACTTTTATGTTTTGGAAGCGTCTAGAAAGCTCCAGAACGACTTTTCAGCGGTTCTTCGGGCAGTTTTTGAGGATATTTATTGAAAAATTTGATTCTAAAATGTTCTAGATGCTCTATACAACGTTTAGAGAGCGTTTCTGGAAGCCTCCAGAAAGCTCCAGAAGCWTTTTTCAGCTTCAGAAGCTTCGAGATCCTCTAAAGCAGCTTTTGGCCGGATTTTTATGGAAAAATTGGTTTTAAACCGTTCCGGAATGCTCTAGAATGAATTTTTGAATCCGAATTATACTTCTCTAAAACAGCTTTTGGCCGGTTTTTATGCCATTTTTATTGAAAAATTGCTTCAAGAATGTTCTAGAAGCGGTATCTATGATTTTTGGTGTTTTTTAGGTTCTGGAAGCTTCTAGGAAGCTCCATGAGCATTTTTTCGGCTTCAGAAGCTTCTAGAGCTTCTGAAACAGCTTTTTAAGCCATTTTTAAGGACTTTTTAATGGTAAATTTGCTTCTAGAATGGTCTAGAAGCGCTATACAAACTTTAAAAGTCAAATTATACTTTTAAAGGCATTTTTCGAGGTATCTCTCAATTTCTAGGATTTTGAGCTTCTGGAAGCTTCTAGACAGCTCCAGAAAGCTCCAGAATTTTCCCAGCACCCCACACACCGATATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>230 139 126 98 95 61 51 38 29 21 21 12 11 11 10 10 10 9 9 9</canonical_bands>
                <polymorphic_bands>230 139 126 98 95 61 51 38 29 21 21 19 12 11 11 10 10 9 9</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>230 130 115 91 88 51 38 31 21 21 21 20 12 11 11 11 10 10 10 9 9 9 9 9 9 7 7</canonical_bands>
                <polymorphic_bands>230 130 115 91 88 51 38 31 21 21 21 20 19 12 11 11 11 10 10 9 9 9 9 9 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>386 214 170 110 61 40 19</canonical_bands>
                <polymorphic_bands>405 214 170 110 61 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGCGCTATATGCATTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTTTAAAACCAATTTTTCCATAA</pcr_primer_p2>
		<pcr_amplicon_size>297</pcr_amplicon_size>
		<canonical_amplicon>GAAGCGCTATATGCATTTTTTACATTTATACAGGCATTGTTCAGGGTTTCTGGCGACTTTTATGTTTTGGAAGCGTCTAGAAAGCTCCAGAACGACTTTTCAGCGGTTCTTCGGGCAGTTTTTGAGGATATTTATTGAAAAATTTGATTCTAAAATGTTCTAGATGCTCTATACAACGTTTAGAGAGCGTTTCTGGAAGCCTCCAGAAAGCTCCAGAAGCTTTTTTCAGCTTCAGAAGCTTCGAGATCCTCTAAAGCAGCTTTTGGCCGGATTTTTATGGAAAAATTGGTTTTAAAC</canonical_amplicon>
		<polymorphic_amplicon>GAAGCGCTATATGCATTTTTTACATTTATACAGGCATTGTTCAGGGTTTCTGGCGACTTTTATGTTTTGGAAGCGTCTAGAAAGCTCCAGAACGACTTTTCAGCGGTTCTTCGGGCAGTTTTTGAGGATATTTATTGAAAAATTTGATTCTAAAATGTTCTAGATGCTCTATACAACGTTTAGAGAGCGTTTCTGGAAGCCTCCAGAAAGCTCCAGAAGCWTTTTTCAGCTTCAGAAGCTTCGAGATCCTCTAAAGCAGCTTTTGGCCGGATTTTTATGGAAAAATTGGTTTTAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20907</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>270936</contig_pos>
        <strand>+</strand>
        <context>TACAGGCATT[G/T]TTCAGGGTtt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAAAATGTTCCAGAAGCGCTATATGCATTTTTTACATTTATACAGGCATT</left_flank>
        <right_flank>TTCAGGGTTTCTGGCGACTTTTATGTTTTGGAAGCGTCTAGAAAGCTCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAAACTTATTTTTCCACAATTTTTAGGCCGAAAAATCGATTTTCCAGCAGTTTCTACCTTAACAATCTCTTCCAATTGCCCATTTTCCCGAATTTCCTCCAATTTTTGGTTGGTATAAGCGGTTAAATCCAAAAACGCCTCATCCACAGACGCCTTCTCCACAATTATCGTCGAGTCGAAATTGTTGAGCACTCGGAACACTTCAGCACTGGCATCTCTGCGAAATTTAGCTTTTTTTATGGGTTTCAAGGCCTTAAACTTGATTTTCAAGCAATTTTTGGGCTCCGGAAGCTTCCAGAACCCCTAAAACAGCTTTTGGGCGATTTTGGACTTACAAATCGGATTTTTTGACAATTTTTGAGTTTTTAGGCATAATTATGAGAAAAACTTAGTTTTGGAAGGTATTTTCTGAAGATTTTCATTGAAAATTTGCATTTAAAAGGTTCCAAAATGTTCCAGAAGCGCTATATGCATTTTTTACATTTATACAGGCATTGTTCAGGGTTTCTGGCGACTTTTATGTTTTGGAAGCGTCTAGAAAGCTCCAGAACGACTTTTCAGCGGTTCTTCGGGCAGTTTTTGAGGATATTTATTGAAAAATTTGATTCTAAAATGTTCTAGATGCTCTATACAACGTTTAGAGAGCGTTTCTGGAAGCCTCCAGAAAGCTCCAGAAGCTTTTTTCAGCTTCAGAAGCTTCGAGATCCTCTAAAGCAGCTTTTGGCCGGATTTTTATGGAAAAATTGGTTTTAAACCGTTCCGGAATGCTCTAGAATGAATTTTTGAATCCGAATTATACTTCTCTAAAACAGCTTTTGGCCGGTTTTTATGCCATTTTTATTGAAAAATTGCTTCAAGAATGTTCTAGAAGCGGTATCTATGATTTTTGGTGTTTTTTAGGTTCTGGAAGCTTCTAGGAAGCTCCATGAGCATTTTTTCGGCTTCAGAAGCTTCTAGAGCTTCTGAAACAGCTTTTTAAGCCATTTTTAAGGACTTT</canonical>
            <polymorphic>CAAAAAACTTATTTTTCCACAATTTTTAGGCCGAAAAATCGATTTTCCAGCAGTTTCTACCTTAACAATCTCTTCCAATTGCCCATTTTCCCGAATTTCCTCCAATTTTTGGTTGGTATAAGCGGTTAAATCCAAAAACGCCTCATCCACAGACGCCTTCTCCACAATTATCGTCGAGTCGAAATTGTTGAGCACTCGGAACACTTCAGCACTGGCATCTCTGCGAAATTTAGCTTTTTTTATGGGTTTCAAGGCCTTAAACTTGATTTTCAAGCAATTTTTGGGCTCCGGAAGCTTCCAGAACCCCTAAAACAGCTTTTGGGCGATTTTGGACTTACAAATCGGATTTTTTGACAATTTTTGAGTTTTTAGGCATAATTATGAGAAAAACTTAGTTTTGGAAGGTATTTTCTGAAGATTTTCATTGAAAATTTGCATTTAAAAGGTTCCAAAATGTTCCAGAAGCGCTATATGCATTTTTTACATTTATACAGGCATTKTTCAGGGTTTCTGGCGACTTTTATGTTTTGGAAGCGTCTAGAAAGCTCCAGAACGACTTTTCAGCGGTTCTTCGGGCAGTTTTTGAGGATATTTATTGAAAAATTTGATTCTAAAATGTTCTAGATGCTCTATACAACGTTTAGAGAGCGTTTCTGGAAGCCTCCAGAAAGCTCCAGAAGCTTTTTTCAGCTTCAGAAGCTTCGAGATCCTCTAAAGCAGCTTTTGGCCGGATTTTTATGGAAAAATTGGTTTTAAACCGTTCCGGAATGCTCTAGAATGAATTTTTGAATCCGAATTATACTTCTCTAAAACAGCTTTTGGCCGGTTTTTATGCCATTTTTATTGAAAAATTGCTTCAAGAATGTTCTAGAAGCGGTATCTATGATTTTTGGTGTTTTTTAGGTTCTGGAAGCTTCTAGGAAGCTCCATGAGCATTTTTTCGGCTTCAGAAGCTTCTAGAGCTTCTGAAACAGCTTTTTAAGCCATTTTTAAGGACTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCCAAAATGTTCCAGAAG</pcr_primer_p1>
		<pcr_primer_p2>GTTTAAAACCAATTTTTCCATAA</pcr_primer_p2>
		<pcr_amplicon_size>313</pcr_amplicon_size>
		<canonical_amplicon>GTTCCAAAATGTTCCAGAAGCGCTATATGCATTTTTTACATTTATACAGGCATTGTTCAGGGTTTCTGGCGACTTTTATGTTTTGGAAGCGTCTAGAAAGCTCCAGAACGACTTTTCAGCGGTTCTTCGGGCAGTTTTTGAGGATATTTATTGAAAAATTTGATTCTAAAATGTTCTAGATGCTCTATACAACGTTTAGAGAGCGTTTCTGGAAGCCTCCAGAAAGCTCCAGAAGCTTTTTTCAGCTTCAGAAGCTTCGAGATCCTCTAAAGCAGCTTTTGGCCGGATTTTTATGGAAAAATTGGTTTTAAAC</canonical_amplicon>
		<polymorphic_amplicon>GTTCCAAAATGTTCCAGAAGCGCTATATGCATTTTTTACATTTATACAGGCATTKTTCAGGGTTTCTGGCGACTTTTATGTTTTGGAAGCGTCTAGAAAGCTCCAGAACGACTTTTCAGCGGTTCTTCGGGCAGTTTTTGAGGATATTTATTGAAAAATTTGATTCTAAAATGTTCTAGATGCTCTATACAACGTTTAGAGAGCGTTTCTGGAAGCCTCCAGAAAGCTCCAGAAGCTTTTTTCAGCTTCAGAAGCTTCGAGATCCTCTAAAGCAGCTTTTGGCCGGATTTTTATGGAAAAATTGGTTTTAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20908</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>270925</contig_pos>
        <strand>+</strand>
        <context>TTTTACATTT[A/T]TACAGGCATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAAAAGGTTCCAAAATGTTCCAGAAGCGCTATATGCATTTTTTACATTT</left_flank>
        <right_flank>TACAGGCATTGTTCAGGGTTTCTGGCGACTTTTATGTTTTGGAAGCGTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTTAGGCCAAAAAACTTATTTTTCCACAATTTTTAGGCCGAAAAATCGATTTTCCAGCAGTTTCTACCTTAACAATCTCTTCCAATTGCCCATTTTCCCGAATTTCCTCCAATTTTTGGTTGGTATAAGCGGTTAAATCCAAAAACGCCTCATCCACAGACGCCTTCTCCACAATTATCGTCGAGTCGAAATTGTTGAGCACTCGGAACACTTCAGCACTGGCATCTCTGCGAAATTTAGCTTTTTTTATGGGTTTCAAGGCCTTAAACTTGATTTTCAAGCAATTTTTGGGCTCCGGAAGCTTCCAGAACCCCTAAAACAGCTTTTGGGCGATTTTGGACTTACAAATCGGATTTTTTGACAATTTTTGAGTTTTTAGGCATAATTATGAGAAAAACTTAGTTTTGGAAGGTATTTTCTGAAGATTTTCATTGAAAATTTGCATTTAAAAGGTTCCAAAATGTTCCAGAAGCGCTATATGCATTTTTTACATTTATACAGGCATTGTTCAGGGTTTCTGGCGACTTTTATGTTTTGGAAGCGTCTAGAAAGCTCCAGAACGACTTTTCAGCGGTTCTTCGGGCAGTTTTTGAGGATATTTATTGAAAAATTTGATTCTAAAATGTTCTAGATGCTCTATACAACGTTTAGAGAGCGTTTCTGGAAGCCTCCAGAAAGCTCCAGAAGCTTTTTTCAGCTTCAGAAGCTTCGAGATCCTCTAAAGCAGCTTTTGGCCGGATTTTTATGGAAAAATTGGTTTTAAACCGTTCCGGAATGCTCTAGAATGAATTTTTGAATCCGAATTATACTTCTCTAAAACAGCTTTTGGCCGGTTTTTATGCCATTTTTATTGAAAAATTGCTTCAAGAATGTTCTAGAAGCGGTATCTATGATTTTTGGTGTTTTTTAGGTTCTGGAAGCTTCTAGGAAGCTCCATGAGCATTTTTTCGGCTTCAGAAGCTTCTAGAGCTTCTGAAACAGCTTTTTAAGCCATTT</canonical>
            <polymorphic>AATTTTTAGGCCAAAAAACTTATTTTTCCACAATTTTTAGGCCGAAAAATCGATTTTCCAGCAGTTTCTACCTTAACAATCTCTTCCAATTGCCCATTTTCCCGAATTTCCTCCAATTTTTGGTTGGTATAAGCGGTTAAATCCAAAAACGCCTCATCCACAGACGCCTTCTCCACAATTATCGTCGAGTCGAAATTGTTGAGCACTCGGAACACTTCAGCACTGGCATCTCTGCGAAATTTAGCTTTTTTTATGGGTTTCAAGGCCTTAAACTTGATTTTCAAGCAATTTTTGGGCTCCGGAAGCTTCCAGAACCCCTAAAACAGCTTTTGGGCGATTTTGGACTTACAAATCGGATTTTTTGACAATTTTTGAGTTTTTAGGCATAATTATGAGAAAAACTTAGTTTTGGAAGGTATTTTCTGAAGATTTTCATTGAAAATTTGCATTTAAAAGGTTCCAAAATGTTCCAGAAGCGCTATATGCATTTTTTACATTTWTACAGGCATTGTTCAGGGTTTCTGGCGACTTTTATGTTTTGGAAGCGTCTAGAAAGCTCCAGAACGACTTTTCAGCGGTTCTTCGGGCAGTTTTTGAGGATATTTATTGAAAAATTTGATTCTAAAATGTTCTAGATGCTCTATACAACGTTTAGAGAGCGTTTCTGGAAGCCTCCAGAAAGCTCCAGAAGCTTTTTTCAGCTTCAGAAGCTTCGAGATCCTCTAAAGCAGCTTTTGGCCGGATTTTTATGGAAAAATTGGTTTTAAACCGTTCCGGAATGCTCTAGAATGAATTTTTGAATCCGAATTATACTTCTCTAAAACAGCTTTTGGCCGGTTTTTATGCCATTTTTATTGAAAAATTGCTTCAAGAATGTTCTAGAAGCGGTATCTATGATTTTTGGTGTTTTTTAGGTTCTGGAAGCTTCTAGGAAGCTCCATGAGCATTTTTTCGGCTTCAGAAGCTTCTAGAGCTTCTGAAACAGCTTTTTAAGCCATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTTAGTTTTGGAAGGTATTTTCT</pcr_primer_p1>
		<pcr_primer_p2>GTTTAAAACCAATTTTTCCATAA</pcr_primer_p2>
		<pcr_amplicon_size>370</pcr_amplicon_size>
		<canonical_amplicon>AACTTAGTTTTGGAAGGTATTTTCTGAAGATTTTCATTGAAAATTTGCATTTAAAAGGTTCCAAAATGTTCCAGAAGCGCTATATGCATTTTTTACATTTATACAGGCATTGTTCAGGGTTTCTGGCGACTTTTATGTTTTGGAAGCGTCTAGAAAGCTCCAGAACGACTTTTCAGCGGTTCTTCGGGCAGTTTTTGAGGATATTTATTGAAAAATTTGATTCTAAAATGTTCTAGATGCTCTATACAACGTTTAGAGAGCGTTTCTGGAAGCCTCCAGAAAGCTCCAGAAGCTTTTTTCAGCTTCAGAAGCTTCGAGATCCTCTAAAGCAGCTTTTGGCCGGATTTTTATGGAAAAATTGGTTTTAAAC</canonical_amplicon>
		<polymorphic_amplicon>AACTTAGTTTTGGAAGGTATTTTCTGAAGATTTTCATTGAAAATTTGCATTTAAAAGGTTCCAAAATGTTCCAGAAGCGCTATATGCATTTTTTACATTTWTACAGGCATTGTTCAGGGTTTCTGGCGACTTTTATGTTTTGGAAGCGTCTAGAAAGCTCCAGAACGACTTTTCAGCGGTTCTTCGGGCAGTTTTTGAGGATATTTATTGAAAAATTTGATTCTAAAATGTTCTAGATGCTCTATACAACGTTTAGAGAGCGTTTCTGGAAGCCTCCAGAAAGCTCCAGAAGCTTTTTTCAGCTTCAGAAGCTTCGAGATCCTCTAAAGCAGCTTTTGGCCGGATTTTTATGGAAAAATTGGTTTTAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20909</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>270881</contig_pos>
        <strand>+</strand>
        <context>GCWTTTAAAA[G/T]GTTCCAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTTTGGAAGGTATTTTCTGAAGATTTTCATTGAAAATTTGCATTTAAAA</left_flank>
        <right_flank>GTTCCAAAATGTTCCAGAAGCGCTATATGCATTTTTTACATTTATACAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATTTTTCAGCGATTCTTAACCTAAAATAAACAATTTTTCAACAATTTTTAGGCCAAAAAACTTATTTTTCCACAATTTTTAGGCCGAAAAATCGATTTTCCAGCAGTTTCTACCTTAACAATCTCTTCCAATTGCCCATTTTCCCGAATTTCCTCCAATTTTTGGTTGGTATAAGCGGTTAAATCCAAAAACGCCTCATCCACAGACGCCTTCTCCACAATTATCGTCGAGTCGAAATTGTTGAGCACTCGGAACACTTCAGCACTGGCATCTCTGCGAAATTTAGCTTTTTTTATGGGTTTCAAGGCCTTAAACTTGATTTTCAAGCAATTTTTGGGCTCCGGAAGCTTCCAGAACCCCTAAAACAGCTTTTGGGCGATTTTGGACTTACAAATCGGATTTTTTGACAATTTTTGAGTTTTTAGGCATAATTATGAGAAAAACTTAGTTTTGGAAGGTATTTTCTGAAGATTTTCATTGAAAATTTGCATTTAAAAGGTTCCAAAATGTTCCAGAAGCGCTATATGCATTTTTTACATTTATACAGGCATTGTTCAGGGTTTCTGGCGACTTTTATGTTTTGGAAGCGTCTAGAAAGCTCCAGAACGACTTTTCAGCGGTTCTTCGGGCAGTTTTTGAGGATATTTATTGAAAAATTTGATTCTAAAATGTTCTAGATGCTCTATACAACGTTTAGAGAGCGTTTCTGGAAGCCTCCAGAAAGCTCCAGAAGCTTTTTTCAGCTTCAGAAGCTTCGAGATCCTCTAAAGCAGCTTTTGGCCGGATTTTTATGGAAAAATTGGTTTTAAACCGTTCCGGAATGCTCTAGAATGAATTTTTGAATCCGAATTATACTTCTCTAAAACAGCTTTTGGCCGGTTTTTATGCCATTTTTATTGAAAAATTGCTTCAAGAATGTTCTAGAAGCGGTATCTATGATTTTTGGTGTTTTTTAGGTTCTGGAAGCTTCTAGGAAGCTCCATGAGCATTTTTTCGGC</canonical>
            <polymorphic>TCATTTTTCAGCGATTCTTAACCTAAAATAAACAATTTTTCAACAATTTTTAGGCCAAAAAACTTATTTTTCCACAATTTTTAGGCCGAAAAATCGATTTTCCAGCAGTTTCTACCTTAACAATCTCTTCCAATTGCCCATTTTCCCGAATTTCCTCCAATTTTTGGTTGGTATAAGCGGTTAAATCCAAAAACGCCTCATCCACAGACGCCTTCTCCACAATTATCGTCGAGTCGAAATTGTTGAGCACTCGGAACACTTCAGCACTGGCATCTCTGCGAAATTTAGCTTTTTTTATGGGTTTCAAGGCCTTAAACTTGATTTTCAAGCAATTTTTGGGCTCCGGAAGCTTCCAGAACCCCTAAAACAGCTTTTGGGCGATTTTGGACTTACAAATCGGATTTTTTGACAATTTTTGAGTTTTTAGGCATAATTATGAGAAAAACTTAGTTTTGGAAGGTATTTTCTGAAGATTTTCATTGAAAATTTGCATTTAAAAKGTTCCAAAATGTTCCAGAAGCGCTATATGCATTTTTTACATTTATACAGGCATTGTTCAGGGTTTCTGGCGACTTTTATGTTTTGGAAGCGTCTAGAAAGCTCCAGAACGACTTTTCAGCGGTTCTTCGGGCAGTTTTTGAGGATATTTATTGAAAAATTTGATTCTAAAATGTTCTAGATGCTCTATACAACGTTTAGAGAGCGTTTCTGGAAGCCTCCAGAAAGCTCCAGAAGCTTTTTTCAGCTTCAGAAGCTTCGAGATCCTCTAAAGCAGCTTTTGGCCGGATTTTTATGGAAAAATTGGTTTTAAACCGTTCCGGAATGCTCTAGAATGAATTTTTGAATCCGAATTATACTTCTCTAAAACAGCTTTTGGCCGGTTTTTATGCCATTTTTATTGAAAAATTGCTTCAAGAATGTTCTAGAAGCGGTATCTATGATTTTTGGTGTTTTTTAGGTTCTGGAAGCTTCTAGGAAGCTCCATGAGCATTTTTTCGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>498 341 161</canonical_bands>
                <polymorphic_bands>659 341</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTTAGTTTTGGAAGGTATTTTCT</pcr_primer_p1>
		<pcr_primer_p2>GTTTAAAACCAATTTTTCCATAA</pcr_primer_p2>
		<pcr_amplicon_size>370</pcr_amplicon_size>
		<canonical_amplicon>AACTTAGTTTTGGAAGGTATTTTCTGAAGATTTTCATTGAAAATTTGCATTTAAAAGGTTCCAAAATGTTCCAGAAGCGCTATATGCATTTTTTACATTTATACAGGCATTGTTCAGGGTTTCTGGCGACTTTTATGTTTTGGAAGCGTCTAGAAAGCTCCAGAACGACTTTTCAGCGGTTCTTCGGGCAGTTTTTGAGGATATTTATTGAAAAATTTGATTCTAAAATGTTCTAGATGCTCTATACAACGTTTAGAGAGCGTTTCTGGAAGCCTCCAGAAAGCTCCAGAAGCTTTTTTCAGCTTCAGAAGCTTCGAGATCCTCTAAAGCAGCTTTTGGCCGGATTTTTATGGAAAAATTGGTTTTAAAC</canonical_amplicon>
		<polymorphic_amplicon>AACTTAGTTTTGGAAGGTATTTTCTGAAGATTTTCATTGAAAATTTGCATTTAAAAKGTTCCAAAATGTTCCAGAAGCGCTATATGCATTTTTTACATTTATACAGGCATTGTTCAGGGTTTCTGGCGACTTTTATGTTTTGGAAGCGTCTAGAAAGCTCCAGAACGACTTTTCAGCGGTTCTTCGGGCAGTTTTTGAGGATATTTATTGAAAAATTTGATTCTAAAATGTTCTAGATGCTCTATACAACGTTTAGAGAGCGTTTCTGGAAGCCTCCAGAAAGCTCCAGAAGCTTTTTTCAGCTTCAGAAGCTTCGAGATCCTCTAAAGCAGCTTTTGGCCGGATTTTTATGGAAAAATTGGTTTTAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20925</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>282353</contig_pos>
        <strand></strand>
        <context>AAAATACTTC[A/G]AAATACTTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGTTTTACGGTAAGTGACAAAATATGAAAGAACATTGGAAAAATACTTC</left_flank>
        <right_flank>AAATACTTTATTCTATACTATAAATACCATAAAACCGAGTTCTCAAACTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCGTTTTATCAGTTGTCACATTTTTGATATCTCTTATGGGAACCGAGATATATCGGTTCAAAGTTCAGCAATCGTCAGCCGACAGGGGGGCTCACGCGGTGAGCAAGTTTGATTCAATTTATCTCGGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTGATAAAATGCTGATCATCTTATCAGTAGTCTTTTATTAGTTGACAACTTTTTGATATGTCTCACTGTAACCGAGATAAATTGGGTCAAAATTGCTCGCCGCCTAAGCGATCTCTGAACTTTGAACCGATATATCTCGGCTCCCATGAGAGATATCAAAAATGTATCAACTGATAAAACGCTGCTGATATCATGAGAAGCAATTTATCAGTTGACACATTTTTTATATCTTTCACAGGAGCCGAGATAATTGAGCTCAAACTTGACACTGTGTGAGAACCCTTCCATTTCAGGTTTTACGGTAAGTGACAAAATATGAAAGAACATTGGAAAAATACTTCAAAATACTTTATTCTATACTATAAATACCATAAAACCGAGTTCTCAAACTTGCTTAGGTTCAGTTGGAGCTGAAGCCGGAGCAATCGGAATCTCAACCTTGACTTCCTTCATCTCCTCATCATCACACATCGTCATTCCATCATCACAAATTGTCATTCCCTCCTCCGCCACCGCCTTCTTCTTCTTCTTGTTCTTCTTCTTCTTTGGCATCGTCTCTCCGTCTTGCGTCCGTTCCATCTCTAGACCCTTCGGTATCGGCCTCTTCTTCTTAAAGAATCCGAATCCCATGCCATGTGGATATCGATCATCCGTAGCCCTTCTTGCCGCTTCCGCCGCGTCCCTTAGTTTCTTTCTCGCCTCAGACTCCCCGACTCGATCTTTTGCCAGCGTACTTGGATCTCTAGTAGGTGCACAGAGATTTTCCGTTTTCAGGACCATTTCTGCTGTTAGTGCTGGTGGCGAGTTAGCCGCAGGCTCTGAAACTGAACATTTTAAGAATT</canonical>
            <polymorphic>AGCGTTTTATCAGTTGTCACATTTTTGATATCTCTTATGGGAACCGAGATATATCGGTTCAAAGTTCAGCAATCGTCAGCCGACAGGGGGGCTCACGCGGTGAGCAAGTTTGATTCAATTTATCTCGGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTGATAAAATGCTGATCATCTTATCAGTAGTCTTTTATTAGTTGACAACTTTTTGATATGTCTCACTGTAACCGAGATAAATTGGGTCAAAATTGCTCGCCGCCTAAGCGATCTCTGAACTTTGAACCGATATATCTCGGCTCCCATGAGAGATATCAAAAATGTATCAACTGATAAAACGCTGCTGATATCATGAGAAGCAATTTATCAGTTGACACATTTTTTATATCTTTCACAGGAGCCGAGATAATTGAGCTCAAACTTGACACTGTGTGAGAACCCTTCCATTTCAGGTTTTACGGTAAGTGACAAAATATGAAAGAACATTGGAAAAATACTTCRAAATACTTTATTCTATACTATAAATACCATAAAACCGAGTTCTCAAACTTGCTTAGGTTCAGTTGGAGCTGAAGCCGGAGCAATCGGAATCTCAACCTTGACTTCCTTCATCTCCTCATCATCACACATCGTCATTCCATCATCACAAATTGTCATTCCCTCCTCCGCCACCGCCTTCTTCTTCTTCTTGTTCTTCTTCTTCTTTGGCATCGTCTCTCCGTCTTGCGTCCGTTCCATCTCTAGACCCTTCGGTATCGGCCTCTTCTTCTTAAAGAATCCGAATCCCATGCCATGTGGATATCGATCATCCGTAGCCCTTCTTGCCGCTTCCGCCGCGTCCCTTAGTTTCTTTCTCGCCTCAGACTCCCCGACTCGATCTTTTGCCAGCGTACTTGGATCTCTAGTAGGTGCACAGAGATTTTCCGTTTTCAGGACCATTTCTGCTGTTAGTGCTGGTGGCGAGTTAGCCGCAGGCTCTGAAACTGAACATTTTAAGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAAAAATATTGTCCTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGAACCTAAGCAAGTTTGAGA</pcr_primer_p2>
		<pcr_amplicon_size>721</pcr_amplicon_size>
		<canonical_amplicon>CAAAATACTTTATTCTATACTATAAATACCATAAAACCGAGTTCTCAAACTTGCTTAGGTTCA</canonical_amplicon>
		<polymorphic_amplicon>CRAAATACTTTATTCTATACTATAAATACCATAAAACCGAGTTCTCAAACTTGCTTAGGTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20926</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>282474</contig_pos>
        <strand></strand>
        <context>TCTCCTCATC[A/C]TCACACATCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAGCCGGAGCAATCGGAATCTCAACCTTGACTTCCTTCATCTCCTCATC</left_flank>
        <right_flank>TCACACATCGTCATTCCATCATCACAAATTGTCATTCCCTCCTCCGCCAC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTCGGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTGATAAAATGCTGATCATCTTATCAGTAGTCTTTTATTAGTTGACAACTTTTTGATATGTCTCACTGTAACCGAGATAAATTGGGTCAAAATTGCTCGCCGCCTAAGCGATCTCTGAACTTTGAACCGATATATCTCGGCTCCCATGAGAGATATCAAAAATGTATCAACTGATAAAACGCTGCTGATATCATGAGAAGCAATTTATCAGTTGACACATTTTTTATATCTTTCACAGGAGCCGAGATAATTGAGCTCAAACTTGACACTGTGTGAGAACCCTTCCATTTCAGGTTTTACGGTAAGTGACAAAATATGAAAGAACATTGGAAAAATACTTCAAAATACTTTATTCTATACTATAAATACCATAAAACCGAGTTCTCAAACTTGCTTAGGTTCAGTTGGAGCTGAAGCCGGAGCAATCGGAATCTCAACCTTGACTTCCTTCATCTCCTCATCATCACACATCGTCATTCCATCATCACAAATTGTCATTCCCTCCTCCGCCACCGCCTTCTTCTTCTTCTTGTTCTTCTTCTTCTTTGGCATCGTCTCTCCGTCTTGCGTCCGTTCCATCTCTAGACCCTTCGGTATCGGCCTCTTCTTCTTAAAGAATCCGAATCCCATGCCATGTGGATATCGATCATCCGTAGCCCTTCTTGCCGCTTCCGCCGCGTCCCTTAGTTTCTTTCTCGCCTCAGACTCCCCGACTCGATCTTTTGCCAGCGTACTTGGATCTCTAGTAGGTGCACAGAGATTTTCCGTTTTCAGGACCATTTCTGCTGTTAGTGCTGGTGGCGAGTTAGCCGCAGGCTCTGAAACTGAACATTTTAAGAATTTTAATTTAAAGGCGCATAGCTGGTCCCGAAGCTGAAACAGCTACGGTTTCTACAAATGAATTCGTGCGACTTTAAACACAGCAATTTGGAATTATTCCATTTCGACCAATTTTAGGCTGTA</canonical>
            <polymorphic>ATCTCGGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTGATAAAATGCTGATCATCTTATCAGTAGTCTTTTATTAGTTGACAACTTTTTGATATGTCTCACTGTAACCGAGATAAATTGGGTCAAAATTGCTCGCCGCCTAAGCGATCTCTGAACTTTGAACCGATATATCTCGGCTCCCATGAGAGATATCAAAAATGTATCAACTGATAAAACGCTGCTGATATCATGAGAAGCAATTTATCAGTTGACACATTTTTTATATCTTTCACAGGAGCCGAGATAATTGAGCTCAAACTTGACACTGTGTGAGAACCCTTCCATTTCAGGTTTTACGGTAAGTGACAAAATATGAAAGAACATTGGAAAAATACTTCAAAATACTTTATTCTATACTATAAATACCATAAAACCGAGTTCTCAAACTTGCTTAGGTTCAGTTGGAGCTGAAGCCGGAGCAATCGGAATCTCAACCTTGACTTCCTTCATCTCCTCATCMTCACACATCGTCATTCCATCATCACAAATTGTCATTCCCTCCTCCGCCACCGCCTTCTTCTTCTTCTTGTTCTTCTTCTTCTTTGGCATCGTCTCTCCGTCTTGCGTCCGTTCCATCTCTAGACCCTTCGGTATCGGCCTCTTCTTCTTAAAGAATCCGAATCCCATGCCATGTGGATATCGATCATCCGTAGCCCTTCTTGCCGCTTCCGCCGCGTCCCTTAGTTTCTTTCTCGCCTCAGACTCCCCGACTCGATCTTTTGCCAGCGTACTTGGATCTCTAGTAGGTGCACAGAGATTTTCCGTTTTCAGGACCATTTCTGCTGTTAGTGCTGGTGGCGAGTTAGCCGCAGGCTCTGAAACTGAACATTTTAAGAATTTTAATTTAAAGGCGCATAGCTGGTCCCGAAGCTGAAACAGCTACGGTTTCTACAAATGAATTCGTGCGACTTTAAACACAGCAATTTGGAATTATTCCATTTCGACCAATTTTAGGCTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACCATAAAACCGAGTTCTCA</pcr_primer_p1>
		<pcr_primer_p2>TTAAGAAGAAGAGGCCGATAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATACCATAAAACCGAGTTCTCAAACTTGCTTAGGTTCAGTTGGAGCTGAAGCCGGAGCAATCGGAATCTCAACCTTGACTTCCTTCATCTCCTCATCATCACACATCGTCATTCCATCATCACAAATTGTCATTCCCTCCTCCGCCACCGCCTTCTTCTTCTTCTTGTTCTTCTTCTTCTTTGGCATCGTCTCTCCGTCTTGCGTCCGTTCCATCTCTAGACCCTTCGGTATCGGCCTCTTCTTCTTAA</canonical_amplicon>
		<polymorphic_amplicon>ATACCATAAAACCGAGTTCTCAAACTTGCTTAGGTTCAGTTGGAGCTGAAGCCGGAGCAATCGGAATCTCAACCTTGACTTCCTTCATCTCCTCATCMTCACACATCGTCATTCCATCATCACAAATTGTCATTCCCTCCTCCGCCACCGCCTTCTTCTTCTTCTTGTTCTTCTTCTTCTTTGGCATCGTCTCTCCGTCTTGCGTCCGTTCCATCTCTAGACCCTTCGGTATCGGCCTCTTCTTCTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20927</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>282509</contig_pos>
        <strand></strand>
        <context>CAAATTGTCA[T/C]TCCCTCCTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTTCATCTCCTCATCATCACACATCGTCATTCCATCATCACAAATTGTCA</left_flank>
        <right_flank>TCCCTCCTCCGCCACCGCCTTCTTCTTCTTCTTGTTCTTCTTCTTCTTTG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTGATAAAATGCTGATCATCTTATCAGTAGTCTTTTATTAGTTGACAACTTTTTGATATGTCTCACTGTAACCGAGATAAATTGGGTCAAAATTGCTCGCCGCCTAAGCGATCTCTGAACTTTGAACCGATATATCTCGGCTCCCATGAGAGATATCAAAAATGTATCAACTGATAAAACGCTGCTGATATCATGAGAAGCAATTTATCAGTTGACACATTTTTTATATCTTTCACAGGAGCCGAGATAATTGAGCTCAAACTTGACACTGTGTGAGAACCCTTCCATTTCAGGTTTTACGGTAAGTGACAAAATATGAAAGAACATTGGAAAAATACTTCAAAATACTTTATTCTATACTATAAATACCATAAAACCGAGTTCTCAAACTTGCTTAGGTTCAGTTGGAGCTGAAGCCGGAGCAATCGGAATCTCAACCTTGACTTCCTTCATCTCCTCATCATCACACATCGTCATTCCATCATCACAAATTGTCATTCCCTCCTCCGCCACCGCCTTCTTCTTCTTCTTGTTCTTCTTCTTCTTTGGCATCGTCTCTCCGTCTTGCGTCCGTTCCATCTCTAGACCCTTCGGTATCGGCCTCTTCTTCTTAAAGAATCCGAATCCCATGCCATGTGGATATCGATCATCCGTAGCCCTTCTTGCCGCTTCCGCCGCGTCCCTTAGTTTCTTTCTCGCCTCAGACTCCCCGACTCGATCTTTTGCCAGCGTACTTGGATCTCTAGTAGGTGCACAGAGATTTTCCGTTTTCAGGACCATTTCTGCTGTTAGTGCTGGTGGCGAGTTAGCCGCAGGCTCTGAAACTGAACATTTTAAGAATTTTAATTTAAAGGCGCATAGCTGGTCCCGAAGCTGAAACAGCTACGGTTTCTACAAATGAATTCGTGCGACTTTAAACACAGCAATTTGGAATTATTCCATTTCGACCAATTTTAGGCTGTATAAGAGAATTCGGAAATGGGCAAAAATATAATGAT</canonical>
            <polymorphic>AACTGATAAAATGCTGATCATCTTATCAGTAGTCTTTTATTAGTTGACAACTTTTTGATATGTCTCACTGTAACCGAGATAAATTGGGTCAAAATTGCTCGCCGCCTAAGCGATCTCTGAACTTTGAACCGATATATCTCGGCTCCCATGAGAGATATCAAAAATGTATCAACTGATAAAACGCTGCTGATATCATGAGAAGCAATTTATCAGTTGACACATTTTTTATATCTTTCACAGGAGCCGAGATAATTGAGCTCAAACTTGACACTGTGTGAGAACCCTTCCATTTCAGGTTTTACGGTAAGTGACAAAATATGAAAGAACATTGGAAAAATACTTCAAAATACTTTATTCTATACTATAAATACCATAAAACCGAGTTCTCAAACTTGCTTAGGTTCAGTTGGAGCTGAAGCCGGAGCAATCGGAATCTCAACCTTGACTTCCTTCATCTCCTCATCATCACACATCGTCATTCCATCATCACAAATTGTCAYTCCCTCCTCCGCCACCGCCTTCTTCTTCTTCTTGTTCTTCTTCTTCTTTGGCATCGTCTCTCCGTCTTGCGTCCGTTCCATCTCTAGACCCTTCGGTATCGGCCTCTTCTTCTTAAAGAATCCGAATCCCATGCCATGTGGATATCGATCATCCGTAGCCCTTCTTGCCGCTTCCGCCGCGTCCCTTAGTTTCTTTCTCGCCTCAGACTCCCCGACTCGATCTTTTGCCAGCGTACTTGGATCTCTAGTAGGTGCACAGAGATTTTCCGTTTTCAGGACCATTTCTGCTGTTAGTGCTGGTGGCGAGTTAGCCGCAGGCTCTGAAACTGAACATTTTAAGAATTTTAATTTAAAGGCGCATAGCTGGTCCCGAAGCTGAAACAGCTACGGTTTCTACAAATGAATTCGTGCGACTTTAAACACAGCAATTTGGAATTATTCCATTTCGACCAATTTTAGGCTGTATAAGAGAATTCGGAAATGGGCAAAAATATAATGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACCATAAAACCGAGTTCTCA</pcr_primer_p1>
		<pcr_primer_p2>TTAAGAAGAAGAGGCCGATAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATACCATAAAACCGAGTTCTCAAACTTGCTTAGGTTCAGTTGGAGCTGAAGCCGGAGCAATCGGAATCTCAACCTTGACTTCCTTCATCTCCTCATCATCACACATCGTCATTCCATCATCACAAATTGTCATTCCCTCCTCCGCCACCGCCTTCTTCTTCTTCTTGTTCTTCTTCTTCTTTGGCATCGTCTCTCCGTCTTGCGTCCGTTCCATCTCTAGACCCTTCGGTATCGGCCTCTTCTTCTTAA</canonical_amplicon>
		<polymorphic_amplicon>ATACCATAAAACCGAGTTCTCAAACTTGCTTAGGTTCAGTTGGAGCTGAAGCCGGAGCAATCGGAATCTCAACCTTGACTTCCTTCATCTCCTCATCATCACACATCGTCATTCCATCATCACAAATTGTCAYTCCCTCCTCCGCCACCGCCTTCTTCTTCTTCTTGTTCTTCTTCTTCTTTGGCATCGTCTCTCCGTCTTGCGTCCGTTCCATCTCTAGACCCTTCGGTATCGGCCTCTTCTTCTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20934</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>282534</contig_pos>
        <strand></strand>
        <context>CCGCcttctt[C/T]ttcttcttgt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCATTCCATCATCACAAATTGTCATTCCCTCCTCCGCCACCGCCTTCTT</left_flank>
        <right_flank>TTCTTCTTGTTCTTCTTCTTCTTTGGCATCGTCTCTCCGTCTTGCGTCCG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGTAGTCTTTTATTAGTTGACAACTTTTTGATATGTCTCACTGTAACCGAGATAAATTGGGTCAAAATTGCTCGCCGCCTAAGCGATCTCTGAACTTTGAACCGATATATCTCGGCTCCCATGAGAGATATCAAAAATGTATCAACTGATAAAACGCTGCTGATATCATGAGAAGCAATTTATCAGTTGACACATTTTTTATATCTTTCACAGGAGCCGAGATAATTGAGCTCAAACTTGACACTGTGTGAGAACCCTTCCATTTCAGGTTTTACGGTAAGTGACAAAATATGAAAGAACATTGGAAAAATACTTCAAAATACTTTATTCTATACTATAAATACCATAAAACCGAGTTCTCAAACTTGCTTAGGTTCAGTTGGAGCTGAAGCCGGAGCAATCGGAATCTCAACCTTGACTTCCTTCATCTCCTCATCATCACACATCGTCATTCCATCATCACAAATTGTCATTCCCTCCTCCGCCACCGCCTTCTTCTTCTTCTTGTTCTTCTTCTTCTTTGGCATCGTCTCTCCGTCTTGCGTCCGTTCCATCTCTAGACCCTTCGGTATCGGCCTCTTCTTCTTAAAGAATCCGAATCCCATGCCATGTGGATATCGATCATCCGTAGCCCTTCTTGCCGCTTCCGCCGCGTCCCTTAGTTTCTTTCTCGCCTCAGACTCCCCGACTCGATCTTTTGCCAGCGTACTTGGATCTCTAGTAGGTGCACAGAGATTTTCCGTTTTCAGGACCATTTCTGCTGTTAGTGCTGGTGGCGAGTTAGCCGCAGGCTCTGAAACTGAACATTTTAAGAATTTTAATTTAAAGGCGCATAGCTGGTCCCGAAGCTGAAACAGCTACGGTTTCTACAAATGAATTCGTGCGACTTTAAACACAGCAATTTGGAATTATTCCATTTCGACCAATTTTAGGCTGTATAAGAGAATTCGGAAATGGGCAAAAATATAATGATTCCGAATTACTGTAGCTGATTTTGC</canonical>
            <polymorphic>TCAGTAGTCTTTTATTAGTTGACAACTTTTTGATATGTCTCACTGTAACCGAGATAAATTGGGTCAAAATTGCTCGCCGCCTAAGCGATCTCTGAACTTTGAACCGATATATCTCGGCTCCCATGAGAGATATCAAAAATGTATCAACTGATAAAACGCTGCTGATATCATGAGAAGCAATTTATCAGTTGACACATTTTTTATATCTTTCACAGGAGCCGAGATAATTGAGCTCAAACTTGACACTGTGTGAGAACCCTTCCATTTCAGGTTTTACGGTAAGTGACAAAATATGAAAGAACATTGGAAAAATACTTCAAAATACTTTATTCTATACTATAAATACCATAAAACCGAGTTCTCAAACTTGCTTAGGTTCAGTTGGAGCTGAAGCCGGAGCAATCGGAATCTCAACCTTGACTTCCTTCATCTCCTCATCATCACACATCGTCATTCCATCATCACAAATTGTCATTCCCTCCTCCGCCACCGCCTTCTTYTTCTTCTTGTTCTTCTTCTTCTTTGGCATCGTCTCTCCGTCTTGCGTCCGTTCCATCTCTAGACCCTTCGGTATCGGCCTCTTCTTCTTAAAGAATCCGAATCCCATGCCATGTGGATATCGATCATCCGTAGCCCTTCTTGCCGCTTCCGCCGCGTCCCTTAGTTTCTTTCTCGCCTCAGACTCCCCGACTCGATCTTTTGCCAGCGTACTTGGATCTCTAGTAGGTGCACAGAGATTTTCCGTTTTCAGGACCATTTCTGCTGTTAGTGCTGGTGGCGAGTTAGCCGCAGGCTCTGAAACTGAACATTTTAAGAATTTTAATTTAAAGGCGCATAGCTGGTCCCGAAGCTGAAACAGCTACGGTTTCTACAAATGAATTCGTGCGACTTTAAACACAGCAATTTGGAATTATTCCATTTCGACCAATTTTAGGCTGTATAAGAGAATTCGGAAATGGGCAAAAATATAATGATTCCGAATTACTGTAGCTGATTTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACCATAAAACCGAGTTCTCA</pcr_primer_p1>
		<pcr_primer_p2>TTAAGAAGAAGAGGCCGATAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATACCATAAAACCGAGTTCTCAAACTTGCTTAGGTTCAGTTGGAGCTGAAGCCGGAGCAATCGGAATCTCAACCTTGACTTCCTTCATCTCCTCATCATCACACATCGTCATTCCATCATCACAAATTGTCATTCCCTCCTCCGCCACCGCCTTCTTCTTCTTCTTGTTCTTCTTCTTCTTTGGCATCGTCTCTCCGTCTTGCGTCCGTTCCATCTCTAGACCCTTCGGTATCGGCCTCTTCTTCTTAA</canonical_amplicon>
		<polymorphic_amplicon>ATACCATAAAACCGAGTTCTCAAACTTGCTTAGGTTCAGTTGGAGCTGAAGCCGGAGCAATCGGAATCTCAACCTTGACTTCCTTCATCTCCTCATCATCACACATCGTCATTCCATCATCACAAATTGTCATTCCCTCCTCCGCCACCGCCTTCTTYTTCTTCTTGTTCTTCTTCTTCTTTGGCATCGTCTCTCCGTCTTGCGTCCGTTCCATCTCTAGACCCTTCGGTATCGGCCTCTTCTTCTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20958</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>282705</contig_pos>
        <strand></strand>
        <context>TTAGTTTCTT[T/C]CTCGCCTCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CGATCATCCGTAGCCCTTCTTGCCGCTTCCGCCGCGTCCCTTAGTTTCTT</left_flank>
        <right_flank>CTCGCCTCAGACTCCCCGACTCGATCTTTTGCCAGCGTACTTGGATCTCT</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAAGCAATTTATCAGTTGACACATTTTTTATATCTTTCACAGGAGCCGAGATAATTGAGCTCAAACTTGACACTGTGTGAGAACCCTTCCATTTCAGGTTTTACGGTAAGTGACAAAATATGAAAGAACATTGGAAAAATACTTCAAAATACTTTATTCTATACTATAAATACCATAAAACCGAGTTCTCAAACTTGCTTAGGTTCAGTTGGAGCTGAAGCCGGAGCAATCGGAATCTCAACCTTGACTTCCTTCATCTCCTCATCATCACACATCGTCATTCCATCATCACAAATTGTCATTCCCTCCTCCGCCACCGCCTTCTTCTTCTTCTTGTTCTTCTTCTTCTTTGGCATCGTCTCTCCGTCTTGCGTCCGTTCCATCTCTAGACCCTTCGGTATCGGCCTCTTCTTCTTAAAGAATCCGAATCCCATGCCATGTGGATATCGATCATCCGTAGCCCTTCTTGCCGCTTCCGCCGCGTCCCTTAGTTTCTTTCTCGCCTCAGACTCCCCGACTCGATCTTTTGCCAGCGTACTTGGATCTCTAGTAGGTGCACAGAGATTTTCCGTTTTCAGGACCATTTCTGCTGTTAGTGCTGGTGGCGAGTTAGCCGCAGGCTCTGAAACTGAACATTTTAAGAATTTTAATTTAAAGGCGCATAGCTGGTCCCGAAGCTGAAACAGCTACGGTTTCTACAAATGAATTCGTGCGACTTTAAACACAGCAATTTGGAATTATTCCATTTCGACCAATTTTAGGCTGTATAAGAGAATTCGGAAATGGGCAAAAATATAATGATTCCGAATTACTGTAGCTGATTTTGCTTCAGGGCCAGCTATGCGCCTTTAAATAGACATTCGGCAAGAAGGTTCATCGGATAACAATATTATCTTTAGGTTCTTACCGTTAGCTTCGGGGCCTGTTGCAATCTCGTTGGCATTTACAGTAGGCGCTGTTGCAGCAGGAGCTTGCTGAGTTTCTTGAGTGTCCTGAGT</canonical>
            <polymorphic>GAGAAGCAATTTATCAGTTGACACATTTTTTATATCTTTCACAGGAGCCGAGATAATTGAGCTCAAACTTGACACTGTGTGAGAACCCTTCCATTTCAGGTTTTACGGTAAGTGACAAAATATGAAAGAACATTGGAAAAATACTTCAAAATACTTTATTCTATACTATAAATACCATAAAACCGAGTTCTCAAACTTGCTTAGGTTCAGTTGGAGCTGAAGCCGGAGCAATCGGAATCTCAACCTTGACTTCCTTCATCTCCTCATCATCACACATCGTCATTCCATCATCACAAATTGTCATTCCCTCCTCCGCCACCGCCTTCTTCTTCTTCTTGTTCTTCTTCTTCTTTGGCATCGTCTCTCCGTCTTGCGTCCGTTCCATCTCTAGACCCTTCGGTATCGGCCTCTTCTTCTTAAAGAATCCGAATCCCATGCCATGTGGATATCGATCATCCGTAGCCCTTCTTGCCGCTTCCGCCGCGTCCCTTAGTTTCTTYCTCGCCTCAGACTCCCCGACTCGATCTTTTGCCAGCGTACTTGGATCTCTAGTAGGTGCACAGAGATTTTCCGTTTTCAGGACCATTTCTGCTGTTAGTGCTGGTGGCGAGTTAGCCGCAGGCTCTGAAACTGAACATTTTAAGAATTTTAATTTAAAGGCGCATAGCTGGTCCCGAAGCTGAAACAGCTACGGTTTCTACAAATGAATTCGTGCGACTTTAAACACAGCAATTTGGAATTATTCCATTTCGACCAATTTTAGGCTGTATAAGAGAATTCGGAAATGGGCAAAAATATAATGATTCCGAATTACTGTAGCTGATTTTGCTTCAGGGCCAGCTATGCGCCTTTAAATAGACATTCGGCAAGAAGGTTCATCGGATAACAATATTATCTTTAGGTTCTTACCGTTAGCTTCGGGGCCTGTTGCAATCTCGTTGGCATTTACAGTAGGCGCTGTTGCAGCAGGAGCTTGCTGAGTTTCTTGAGTGTCCTGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCTCTAGACCCTTCGGTAT</pcr_primer_p1>
		<pcr_primer_p2>ACTAACAGCAGAAATGGTCCT</pcr_primer_p2>
		<pcr_amplicon_size>217</pcr_amplicon_size>
		<canonical_amplicon>CATCTCTAGACCCTTCGGTATCGGCCTCTTCTTCTTAAAGAATCCGAATCCCATGCCATGTGGATATCGATCATCCGTAGCCCTTCTTGCCGCTTCCGCCGCGTCCCTTAGTTTCTTTCTCGCCTCAGACTCCCCGACTCGATCTTTTGCCAGCGTACTTGGATCTCTAGTAGGTGCACAGAGATTTTCCGTTTTCAGGACCATTTCTGCTGTTAGT</canonical_amplicon>
		<polymorphic_amplicon>CATCTCTAGACCCTTCGGTATCGGCCTCTTCTTCTTAAAGAATCCGAATCCCATGCCATGTGGATATCGATCATCCGTAGCCCTTCTTGCCGCTTCCGCCGCGTCCCTTAGTTTCTTYCTCGCCTCAGACTCCCCGACTCGATCTTTTGCCAGCGTACTTGGATCTCTAGTAGGTGCACAGAGATTTTCCGTTTTCAGGACCATTTCTGCTGTTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20959</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>282723</contig_pos>
        <strand></strand>
        <context>CAGACTCCCC[G/C]ACTCGATCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CTTGCCGCTTCCGCCGCGTCCCTTAGTTTCTTTCTCGCCTCAGACTCCCC</left_flank>
        <right_flank>ACTCGATCTTTTGCCAGCGTACTTGGATCTCTAGTAGGTGCACAGAGATT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACACATTTTTTATATCTTTCACAGGAGCCGAGATAATTGAGCTCAAACTTGACACTGTGTGAGAACCCTTCCATTTCAGGTTTTACGGTAAGTGACAAAATATGAAAGAACATTGGAAAAATACTTCAAAATACTTTATTCTATACTATAAATACCATAAAACCGAGTTCTCAAACTTGCTTAGGTTCAGTTGGAGCTGAAGCCGGAGCAATCGGAATCTCAACCTTGACTTCCTTCATCTCCTCATCATCACACATCGTCATTCCATCATCACAAATTGTCATTCCCTCCTCCGCCACCGCCTTCTTCTTCTTCTTGTTCTTCTTCTTCTTTGGCATCGTCTCTCCGTCTTGCGTCCGTTCCATCTCTAGACCCTTCGGTATCGGCCTCTTCTTCTTAAAGAATCCGAATCCCATGCCATGTGGATATCGATCATCCGTAGCCCTTCTTGCCGCTTCCGCCGCGTCCCTTAGTTTCTTTCTCGCCTCAGACTCCCCGACTCGATCTTTTGCCAGCGTACTTGGATCTCTAGTAGGTGCACAGAGATTTTCCGTTTTCAGGACCATTTCTGCTGTTAGTGCTGGTGGCGAGTTAGCCGCAGGCTCTGAAACTGAACATTTTAAGAATTTTAATTTAAAGGCGCATAGCTGGTCCCGAAGCTGAAACAGCTACGGTTTCTACAAATGAATTCGTGCGACTTTAAACACAGCAATTTGGAATTATTCCATTTCGACCAATTTTAGGCTGTATAAGAGAATTCGGAAATGGGCAAAAATATAATGATTCCGAATTACTGTAGCTGATTTTGCTTCAGGGCCAGCTATGCGCCTTTAAATAGACATTCGGCAAGAAGGTTCATCGGATAACAATATTATCTTTAGGTTCTTACCGTTAGCTTCGGGGCCTGTTGCAATCTCGTTGGCATTTACAGTAGGCGCTGTTGCAGCAGGAGCTTGCTGAGTTTCTTGAGTGTCCTGAGTTTCCTGAGTTTTCTGAAT</canonical>
            <polymorphic>TGACACATTTTTTATATCTTTCACAGGAGCCGAGATAATTGAGCTCAAACTTGACACTGTGTGAGAACCCTTCCATTTCAGGTTTTACGGTAAGTGACAAAATATGAAAGAACATTGGAAAAATACTTCAAAATACTTTATTCTATACTATAAATACCATAAAACCGAGTTCTCAAACTTGCTTAGGTTCAGTTGGAGCTGAAGCCGGAGCAATCGGAATCTCAACCTTGACTTCCTTCATCTCCTCATCATCACACATCGTCATTCCATCATCACAAATTGTCATTCCCTCCTCCGCCACCGCCTTCTTCTTCTTCTTGTTCTTCTTCTTCTTTGGCATCGTCTCTCCGTCTTGCGTCCGTTCCATCTCTAGACCCTTCGGTATCGGCCTCTTCTTCTTAAAGAATCCGAATCCCATGCCATGTGGATATCGATCATCCGTAGCCCTTCTTGCCGCTTCCGCCGCGTCCCTTAGTTTCTTTCTCGCCTCAGACTCCCCSACTCGATCTTTTGCCAGCGTACTTGGATCTCTAGTAGGTGCACAGAGATTTTCCGTTTTCAGGACCATTTCTGCTGTTAGTGCTGGTGGCGAGTTAGCCGCAGGCTCTGAAACTGAACATTTTAAGAATTTTAATTTAAAGGCGCATAGCTGGTCCCGAAGCTGAAACAGCTACGGTTTCTACAAATGAATTCGTGCGACTTTAAACACAGCAATTTGGAATTATTCCATTTCGACCAATTTTAGGCTGTATAAGAGAATTCGGAAATGGGCAAAAATATAATGATTCCGAATTACTGTAGCTGATTTTGCTTCAGGGCCAGCTATGCGCCTTTAAATAGACATTCGGCAAGAAGGTTCATCGGATAACAATATTATCTTTAGGTTCTTACCGTTAGCTTCGGGGCCTGTTGCAATCTCGTTGGCATTTACAGTAGGCGCTGTTGCAGCAGGAGCTTGCTGAGTTTCTTGAGTGTCCTGAGTTTCCTGAGTTTTCTGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>284 217 216 187 82 8 6</canonical_bands>
                <polymorphic_bands>292 217 216 187 82 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATCTCTAGACCCTTCGGTAT</pcr_primer_p1>
		<pcr_primer_p2>ACTAACAGCAGAAATGGTCCT</pcr_primer_p2>
		<pcr_amplicon_size>217</pcr_amplicon_size>
		<canonical_amplicon>CATCTCTAGACCCTTCGGTATCGGCCTCTTCTTCTTAAAGAATCCGAATCCCATGCCATGTGGATATCGATCATCCGTAGCCCTTCTTGCCGCTTCCGCCGCGTCCCTTAGTTTCTTTCTCGCCTCAGACTCCCCGACTCGATCTTTTGCCAGCGTACTTGGATCTCTAGTAGGTGCACAGAGATTTTCCGTTTTCAGGACCATTTCTGCTGTTAGT</canonical_amplicon>
		<polymorphic_amplicon>CATCTCTAGACCCTTCGGTATCGGCCTCTTCTTCTTAAAGAATCCGAATCCCATGCCATGTGGATATCGATCATCCGTAGCCCTTCTTGCCGCTTCCGCCGCGTCCCTTAGTTTCTTTCTCGCCTCAGACTCCCCSACTCGATCTTTTGCCAGCGTACTTGGATCTCTAGTAGGTGCACAGAGATTTTCCGTTTTCAGGACCATTTCTGCTGTTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20960</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>287787</contig_pos>
        <strand>+</strand>
        <context>GAATTGTGAG[A/G]AGCTGTCAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCATTTTGTTCCTTAACAACTACTGGATGAGCCAAGCTGGAATTGTGAG</left_flank>
        <right_flank>AGCTGTCAAGTTTTGAGCAGGCGGAGCCATTGCCGAAGAAAAGTTGGCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGCTACGGTAGGACAGCTAAATTCAATCAAAGATAATATTCCTCTTACTTGTCATAGTCGAATTCGGGTGTCACCGTTCCGGCGTTTTCTTCCTCGTTCTCTTTCGAGTCATGCTCATAGAGTTCCATACAGTAGCGTGCATAAAGAAATGAGTCCGAATACTGCATTCCCAACATCCTGTAATGCAGAGCGGTGAGCTTGAAGCGGATAATGGCCAAAAATCGGAAACCGAATGAAAACGGAAGATCAAAATGAGCTGAAAAAGTGTATTTTAAGTTCCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTCTTAAAATAACGAAGTGCAAGGAAAAATCCAGCACCAGTCAAGCCAACGACAACTGCTCCAGCCAGTGCAGCACCCAAATAACTGAAAATTCAAAATTCGAAGGGTTGAAAAAAGAATAACTCACATCGATAACCCATTTTGTTCCTTAACAACTACTGGATGAGCCAAGCTGGAATTGTGAGGAGCTGTCAAGTTTTGAGCAGGCGGAGCCATTGCCGAAGAAAAGTTGGCAAAAAACAATTCCATTTTGCTCAGTGAATCTGCGGATTTTCCAATGTCTGACTGGTGGCTATCATAGTCCAGACCCATAGAATCCAGCGAATCGAGTTTTGTTTTGAATTCCAAAAGTTCCGACTTCTTGGAAGACGTCTTCGACATCTTCTCAACTGATCTACCAATCGCTCCAAAATCCAAAGAGAGTCCATTGATCGATTCCGCAAGAGTGAAATTCAGGGAAGTGAGATTCGTCGAGTTCGAAACTTTGGCAGAAGATTTGATCCTGTCAACATCTCGATAGAAATCGGTCAGTTTTGCATCCAATCCATCTAGATTATTCAGATTTTTGTCATCTTCTGAATCCAGATTCCAACTCAAACTTGCATTTTCATTCAACACAAAATCAATATCCGTCTTGTCCAGATTCAGTTTTCTATCGGAAGCCAACTTCATACTTTTGAAGACAC</canonical>
            <polymorphic>TAAGCTACGGTAGGACAGCTAAATTCAATCAAAGATAATATTCCTCTTACTTGTCATAGTCGAATTCGGGTGTCACCGTTCCGGCGTTTTCTTCCTCGTTCTCTTTCGAGTCATGCTCATAGAGTTCCATACAGTAGCGTGCATAAAGAAATGAGTCCGAATACTGCATTCCCAACATCCTGTAATGCAGAGCGGTGAGCTTGAAGCGGATAATGGCCAAAAATCGGAAACCGAATGAAAACGGAAGATCAAAATGAGCTGAAAAAGTGTATTTTAAGTTCCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTCTTAAAATAACGAAGTGCAAGGAAAAATCCAGCACCAGTCAAGCCAACGACAACTGCTCCAGCCAGTGCAGCACCCAAATAACTGAAAATTCAAAATTCGAAGGGTTGAAAAAAGAATAACTCACATCGATAACCCATTTTGTTCCTTAACAACTACTGGATGAGCCAAGCTGGAATTGTGAGRAGCTGTCAAGTTTTGAGCAGGCGGAGCCATTGCCGAAGAAAAGTTGGCAAAAAACAATTCCATTTTGCTCAGTGAATCTGCGGATTTTCCAATGTCTGACTGGTGGCTATCATAGTCCAGACCCATAGAATCCAGCGAATCGAGTTTTGTTTTGAATTCCAAAAGTTCCGACTTCTTGGAAGACGTCTTCGACATCTTCTCAACTGATCTACCAATCGCTCCAAAATCCAAAGAGAGTCCATTGATCGATTCCGCAAGAGTGAAATTCAGGGAAGTGAGATTCGTCGAGTTCGAAACTTTGGCAGAAGATTTGATCCTGTCAACATCTCGATAGAAATCGGTCAGTTTTGCATCCAATCCATCTAGATTATTCAGATTTTTGTCATCTTCTGAATCCAGATTCCAACTCAAACTTGCATTTTCATTCAACACAAAATCAATATCCGTCTTGTCCAGATTCAGTTTTCTATCGGAAGCCAACTTCATACTTTTGAAGACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAATAACTGAAAATTCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATTCTATGGGTCTGGACTATGAT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CCAAATAACTGAAAATTCAAAATTCGAAGGGTTGAAAAAAGAATAACTCACATCGATAACCCATTTTGTTCCTTAACAACTACTGGATGAGCCAAGCTGGAATTGTGAGGAGCTGTCAAGTTTTGAGCAGGCGGAGCCATTGCCGAAGAAAAGTTGGCAAAAAACAATTCCATTTTGCTCAGTGAATCTGCGGATTTTCCAATGTCTGACTGGTGGCTATCATAGTCCAGACCCATAGAAT</canonical_amplicon>
		<polymorphic_amplicon>CCAAATAACTGAAAATTCAAAATTCGAAGGGTTGAAAAAAGAATAACTCACATCGATAACCCATTTTGTTCCTTAACAACTACTGGATGAGCCAAGCTGGAATTGTGAGRAGCTGTCAAGTTTTGAGCAGGCGGAGCCATTGCCGAAGAAAAGTTGGCAAAAAACAATTCCATTTTGCTCAGTGAATCTGCGGATTTTCCAATGTCTGACTGGTGGCTATCATAGTCCAGACCCATAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20961</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>287669</contig_pos>
        <strand>+</strand>
        <context>GCTCCAGCCA[G/T]TGCAGCACCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGCAAGGAAAAATCCAGCACCAGTCAAGCCAACGACAACTGCTCCAGCCA</left_flank>
        <right_flank>TGCAGCACCCAAATAACTGAAAATTCAAAATTCGAAGGGTTGAAAAAAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCACTAAAAACATGTTTAGATTAATATGAGTAACACTTCATCAGTTGACCACTTTTTGATATCTGCCACAGAAAATAAGATATACGGGCTCAAAGCTGAAGGTTGAATGAATTCAGCTAAGCTACGGTAGGACAGCTAAATTCAATCAAAGATAATATTCCTCTTACTTGTCATAGTCGAATTCGGGTGTCACCGTTCCGGCGTTTTCTTCCTCGTTCTCTTTCGAGTCATGCTCATAGAGTTCCATACAGTAGCGTGCATAAAGAAATGAGTCCGAATACTGCATTCCCAACATCCTGTAATGCAGAGCGGTGAGCTTGAAGCGGATAATGGCCAAAAATCGGAAACCGAATGAAAACGGAAGATCAAAATGAGCTGAAAAAGTGTATTTTAAGTTCCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTCTTAAAATAACGAAGTGCAAGGAAAAATCCAGCACCAGTCAAGCCAACGACAACTGCTCCAGCCAGTGCAGCACCCAAATAACTGAAAATTCAAAATTCGAAGGGTTGAAAAAAGAATAACTCACATCGATAACCCATTTTGTTCCTTAACAACTACTGGATGAGCCAAGCTGGAATTGTGAGGAGCTGTCAAGTTTTGAGCAGGCGGAGCCATTGCCGAAGAAAAGTTGGCAAAAAACAATTCCATTTTGCTCAGTGAATCTGCGGATTTTCCAATGTCTGACTGGTGGCTATCATAGTCCAGACCCATAGAATCCAGCGAATCGAGTTTTGTTTTGAATTCCAAAAGTTCCGACTTCTTGGAAGACGTCTTCGACATCTTCTCAACTGATCTACCAATCGCTCCAAAATCCAAAGAGAGTCCATTGATCGATTCCGCAAGAGTGAAATTCAGGGAAGTGAGATTCGTCGAGTTCGAAACTTTGGCAGAAGATTTGATCCTGTCAACATCTCGATAGAAATCGGTCAGTTTTGCATCCAATCCATCTAGATTATTCAGATTTTTG</canonical>
            <polymorphic>TTCACTAAAAACATGTTTAGATTAATATGAGTAACACTTCATCAGTTGACCACTTTTTGATATCTGCCACAGAAAATAAGATATACGGGCTCAAAGCTGAAGGTTGAATGAATTCAGCTAAGCTACGGTAGGACAGCTAAATTCAATCAAAGATAATATTCCTCTTACTTGTCATAGTCGAATTCGGGTGTCACCGTTCCGGCGTTTTCTTCCTCGTTCTCTTTCGAGTCATGCTCATAGAGTTCCATACAGTAGCGTGCATAAAGAAATGAGTCCGAATACTGCATTCCCAACATCCTGTAATGCAGAGCGGTGAGCTTGAAGCGGATAATGGCCAAAAATCGGAAACCGAATGAAAACGGAAGATCAAAATGAGCTGAAAAAGTGTATTTTAAGTTCCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTCTTAAAATAACGAAGTGCAAGGAAAAATCCAGCACCAGTCAAGCCAACGACAACTGCTCCAGCCAKTGCAGCACCCAAATAACTGAAAATTCAAAATTCGAAGGGTTGAAAAAAGAATAACTCACATCGATAACCCATTTTGTTCCTTAACAACTACTGGATGAGCCAAGCTGGAATTGTGAGGAGCTGTCAAGTTTTGAGCAGGCGGAGCCATTGCCGAAGAAAAGTTGGCAAAAAACAATTCCATTTTGCTCAGTGAATCTGCGGATTTTCCAATGTCTGACTGGTGGCTATCATAGTCCAGACCCATAGAATCCAGCGAATCGAGTTTTGTTTTGAATTCCAAAAGTTCCGACTTCTTGGAAGACGTCTTCGACATCTTCTCAACTGATCTACCAATCGCTCCAAAATCCAAAGAGAGTCCATTGATCGATTCCGCAAGAGTGAAATTCAGGGAAGTGAGATTCGTCGAGTTCGAAACTTTGGCAGAAGATTTGATCCTGTCAACATCTCGATAGAAATCGGTCAGTTTTGCATCCAATCCATCTAGATTATTCAGATTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>157 121 105 77 72 66 57 56 51 36 34 32 31 28 17 17 16 15 5 4 3</canonical_bands>
                <polymorphic_bands>157 121 105 77 72 66 57 56 51 39 36 32 31 28 17 17 16 15 4 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATGAAAACGGAAGATCAA</pcr_primer_p1>
		<pcr_primer_p2>CCAGTAGTTGTTAAGGAACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GAATGAAAACGGAAGATCAAAATGAGCTGAAAAAGTGTATTTTAAGTTCCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTCTTAAAATAACGAAGTGCAAGGAAAAATCCAGCACCAGTCAAGCCAACGACAACTGCTCCAGCCAGTGCAGCACCCAAATAACTGAAAATTCAAAATTCGAAGGGTTGAAAAAAGAATAACTCACATCGATAACCCATTTTGTTCCTTAACAACTACTGG</canonical_amplicon>
		<polymorphic_amplicon>GAATGAAAACGGAAGATCAAAATGAGCTGAAAAAGTGTATTTTAAGTTCCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTCTTAAAATAACGAAGTGCAAGGAAAAATCCAGCACCAGTCAAGCCAACGACAACTGCTCCAGCCAKTGCAGCACCCAAATAACTGAAAATTCAAAATTCGAAGGGTTGAAAAAAGAATAACTCACATCGATAACCCATTTTGTTCCTTAACAACTACTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20962</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>287634</contig_pos>
        <strand>+</strand>
        <context>GGAAAAATCC[A/C]GCACCAGTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAGACTCACCTCGTTTGTTCTTAAAATAACGAAGTGCAAGGAAAAATCC</left_flank>
        <right_flank>GCACCAGTCAAGCCAACGACAACTGCTCCAGCCAGTGCAGCACCCAAATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATCTCGGATACGGTAGGAGATATTAAAAAGTTGTTCACTAAAAACATGTTTAGATTAATATGAGTAACACTTCATCAGTTGACCACTTTTTGATATCTGCCACAGAAAATAAGATATACGGGCTCAAAGCTGAAGGTTGAATGAATTCAGCTAAGCTACGGTAGGACAGCTAAATTCAATCAAAGATAATATTCCTCTTACTTGTCATAGTCGAATTCGGGTGTCACCGTTCCGGCGTTTTCTTCCTCGTTCTCTTTCGAGTCATGCTCATAGAGTTCCATACAGTAGCGTGCATAAAGAAATGAGTCCGAATACTGCATTCCCAACATCCTGTAATGCAGAGCGGTGAGCTTGAAGCGGATAATGGCCAAAAATCGGAAACCGAATGAAAACGGAAGATCAAAATGAGCTGAAAAAGTGTATTTTAAGTTCCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTCTTAAAATAACGAAGTGCAAGGAAAAATCCAGCACCAGTCAAGCCAACGACAACTGCTCCAGCCAGTGCAGCACCCAAATAACTGAAAATTCAAAATTCGAAGGGTTGAAAAAAGAATAACTCACATCGATAACCCATTTTGTTCCTTAACAACTACTGGATGAGCCAAGCTGGAATTGTGAGGAGCTGTCAAGTTTTGAGCAGGCGGAGCCATTGCCGAAGAAAAGTTGGCAAAAAACAATTCCATTTTGCTCAGTGAATCTGCGGATTTTCCAATGTCTGACTGGTGGCTATCATAGTCCAGACCCATAGAATCCAGCGAATCGAGTTTTGTTTTGAATTCCAAAAGTTCCGACTTCTTGGAAGACGTCTTCGACATCTTCTCAACTGATCTACCAATCGCTCCAAAATCCAAAGAGAGTCCATTGATCGATTCCGCAAGAGTGAAATTCAGGGAAGTGAGATTCGTCGAGTTCGAAACTTTGGCAGAAGATTTGATCCTGTCAACATCTCGATAGAAATCGGTCAGTT</canonical>
            <polymorphic>TTATCTCGGATACGGTAGGAGATATTAAAAAGTTGTTCACTAAAAACATGTTTAGATTAATATGAGTAACACTTCATCAGTTGACCACTTTTTGATATCTGCCACAGAAAATAAGATATACGGGCTCAAAGCTGAAGGTTGAATGAATTCAGCTAAGCTACGGTAGGACAGCTAAATTCAATCAAAGATAATATTCCTCTTACTTGTCATAGTCGAATTCGGGTGTCACCGTTCCGGCGTTTTCTTCCTCGTTCTCTTTCGAGTCATGCTCATAGAGTTCCATACAGTAGCGTGCATAAAGAAATGAGTCCGAATACTGCATTCCCAACATCCTGTAATGCAGAGCGGTGAGCTTGAAGCGGATAATGGCCAAAAATCGGAAACCGAATGAAAACGGAAGATCAAAATGAGCTGAAAAAGTGTATTTTAAGTTCCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTCTTAAAATAACGAAGTGCAAGGAAAAATCCMGCACCAGTCAAGCCAACGACAACTGCTCCAGCCAGTGCAGCACCCAAATAACTGAAAATTCAAAATTCGAAGGGTTGAAAAAAGAATAACTCACATCGATAACCCATTTTGTTCCTTAACAACTACTGGATGAGCCAAGCTGGAATTGTGAGGAGCTGTCAAGTTTTGAGCAGGCGGAGCCATTGCCGAAGAAAAGTTGGCAAAAAACAATTCCATTTTGCTCAGTGAATCTGCGGATTTTCCAATGTCTGACTGGTGGCTATCATAGTCCAGACCCATAGAATCCAGCGAATCGAGTTTTGTTTTGAATTCCAAAAGTTCCGACTTCTTGGAAGACGTCTTCGACATCTTCTCAACTGATCTACCAATCGCTCCAAAATCCAAAGAGAGTCCATTGATCGATTCCGCAAGAGTGAAATTCAGGGAAGTGAGATTCGTCGAGTTCGAAACTTTGGCAGAAGATTTGATCCTGTCAACATCTCGATAGAAATCGGTCAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCCAACATCCTGTAATG</pcr_primer_p1>
		<pcr_primer_p2>TCGAATTTTGAATTTTCAGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCCCAACATCCTGTAATGCAGAGCGGTGAGCTTGAAGCGGATAATGGCCAAAAATCGGAAACCGAATGAAAACGGAAGATCAAAATGAGCTGAAAAAGTGTATTTTAAGTTCCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTCTTAAAATAACGAAGTGCAAGGAAAAATCCAGCACCAGTCAAGCCAACGACAACTGCTCCAGCCAGTGCAGCACCCAAATAACTGAAAATTCAAAATTCGA</canonical_amplicon>
		<polymorphic_amplicon>ATTCCCAACATCCTGTAATGCAGAGCGGTGAGCTTGAAGCGGATAATGGCCAAAAATCGGAAACCGAATGAAAACGGAAGATCAAAATGAGCTGAAAAAGTGTATTTTAAGTTCCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTCTTAAAATAACGAAGTGCAAGGAAAAATCCMGCACCAGTCAAGCCAACGACAACTGCTCCAGCCAGTGCAGCACCCAAATAACTGAAAATTCAAAATTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20963</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>287618</contig_pos>
        <strand>+</strand>
        <context>AAATAACGAM[C/G]TGCAAGGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTCTTAAAATAACGAA</left_flank>
        <right_flank>TGCAAGGAAAAATCCAGCACCAGTCAAGCCAACGACAACTGCTCCAGCCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAACTTTGACCCAATTTATCTCGGATACGGTAGGAGATATTAAAAAGTTGTTCACTAAAAACATGTTTAGATTAATATGAGTAACACTTCATCAGTTGACCACTTTTTGATATCTGCCACAGAAAATAAGATATACGGGCTCAAAGCTGAAGGTTGAATGAATTCAGCTAAGCTACGGTAGGACAGCTAAATTCAATCAAAGATAATATTCCTCTTACTTGTCATAGTCGAATTCGGGTGTCACCGTTCCGGCGTTTTCTTCCTCGTTCTCTTTCGAGTCATGCTCATAGAGTTCCATACAGTAGCGTGCATAAAGAAATGAGTCCGAATACTGCATTCCCAACATCCTGTAATGCAGAGCGGTGAGCTTGAAGCGGATAATGGCCAAAAATCGGAAACCGAATGAAAACGGAAGATCAAAATGAGCTGAAAAAGTGTATTTTAAGTTCCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTCTTAAAATAACGAAGTGCAAGGAAAAATCCAGCACCAGTCAAGCCAACGACAACTGCTCCAGCCAGTGCAGCACCCAAATAACTGAAAATTCAAAATTCGAAGGGTTGAAAAAAGAATAACTCACATCGATAACCCATTTTGTTCCTTAACAACTACTGGATGAGCCAAGCTGGAATTGTGAGGAGCTGTCAAGTTTTGAGCAGGCGGAGCCATTGCCGAAGAAAAGTTGGCAAAAAACAATTCCATTTTGCTCAGTGAATCTGCGGATTTTCCAATGTCTGACTGGTGGCTATCATAGTCCAGACCCATAGAATCCAGCGAATCGAGTTTTGTTTTGAATTCCAAAAGTTCCGACTTCTTGGAAGACGTCTTCGACATCTTCTCAACTGATCTACCAATCGCTCCAAAATCCAAAGAGAGTCCATTGATCGATTCCGCAAGAGTGAAATTCAGGGAAGTGAGATTCGTCGAGTTCGAAACTTTGGCAGAAGATTTGATCCTGTCAACATCTCGA</canonical>
            <polymorphic>GCAACTTTGACCCAATTTATCTCGGATACGGTAGGAGATATTAAAAAGTTGTTCACTAAAAACATGTTTAGATTAATATGAGTAACACTTCATCAGTTGACCACTTTTTGATATCTGCCACAGAAAATAAGATATACGGGCTCAAAGCTGAAGGTTGAATGAATTCAGCTAAGCTACGGTAGGACAGCTAAATTCAATCAAAGATAATATTCCTCTTACTTGTCATAGTCGAATTCGGGTGTCACCGTTCCGGCGTTTTCTTCCTCGTTCTCTTTCGAGTCATGCTCATAGAGTTCCATACAGTAGCGTGCATAAAGAAATGAGTCCGAATACTGCATTCCCAACATCCTGTAATGCAGAGCGGTGAGCTTGAAGCGGATAATGGCCAAAAATCGGAAACCGAATGAAAACGGAAGATCAAAATGAGCTGAAAAAGTGTATTTTAAGTTCCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTCTTAAAATAACGAASTGCAAGGAAAAATCCAGCACCAGTCAAGCCAACGACAACTGCTCCAGCCAGTGCAGCACCCAAATAACTGAAAATTCAAAATTCGAAGGGTTGAAAAAAGAATAACTCACATCGATAACCCATTTTGTTCCTTAACAACTACTGGATGAGCCAAGCTGGAATTGTGAGGAGCTGTCAAGTTTTGAGCAGGCGGAGCCATTGCCGAAGAAAAGTTGGCAAAAAACAATTCCATTTTGCTCAGTGAATCTGCGGATTTTCCAATGTCTGACTGGTGGCTATCATAGTCCAGACCCATAGAATCCAGCGAATCGAGTTTTGTTTTGAATTCCAAAAGTTCCGACTTCTTGGAAGACGTCTTCGACATCTTCTCAACTGATCTACCAATCGCTCCAAAATCCAAAGAGAGTCCATTGATCGATTCCGCAAGAGTGAAATTCAGGGAAGTGAGATTCGTCGAGTTCGAAACTTTGGCAGAAGATTTGATCCTGTCAACATCTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>157 121 77 72 66 57 56 55 54 51 36 34 32 31 28 17 17 16 15 5 3</canonical_bands>
                <polymorphic_bands>157 121 77 72 66 57 56 55 54 51 45 36 34 32 31 17 16 15 5 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCCCAACATCCTGTAATG</pcr_primer_p1>
		<pcr_primer_p2>TCGAATTTTGAATTTTCAGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCCCAACATCCTGTAATGCAGAGCGGTGAGCTTGAAGCGGATAATGGCCAAAAATCGGAAACCGAATGAAAACGGAAGATCAAAATGAGCTGAAAAAGTGTATTTTAAGTTCCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTCTTAAAATAACGAAGTGCAAGGAAAAATCCAGCACCAGTCAAGCCAACGACAACTGCTCCAGCCAGTGCAGCACCCAAATAACTGAAAATTCAAAATTCGA</canonical_amplicon>
		<polymorphic_amplicon>ATTCCCAACATCCTGTAATGCAGAGCGGTGAGCTTGAAGCGGATAATGGCCAAAAATCGGAAACCGAATGAAAACGGAAGATCAAAATGAGCTGAAAAAGTGTATTTTAAGTTCCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTCTTAAAATAACGAASTGCAAGGAAAAATCCAGCACCAGTCAAGCCAACGACAACTGCTCCAGCCAGTGCAGCACCCAAATAACTGAAAATTCAAAATTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20964</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>287617</contig_pos>
        <strand>+</strand>
        <context>AAAATAACGA[A/C]STGCAAGGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTCTTAAAATAACGA</left_flank>
        <right_flank>GTGCAAGGAAAAATCCAGCACCAGTCAAGCCAACGACAACTGCTCCAGCC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCAACTTTGACCCAATTTATCTCGGATACGGTAGGAGATATTAAAAAGTTGTTCACTAAAAACATGTTTAGATTAATATGAGTAACACTTCATCAGTTGACCACTTTTTGATATCTGCCACAGAAAATAAGATATACGGGCTCAAAGCTGAAGGTTGAATGAATTCAGCTAAGCTACGGTAGGACAGCTAAATTCAATCAAAGATAATATTCCTCTTACTTGTCATAGTCGAATTCGGGTGTCACCGTTCCGGCGTTTTCTTCCTCGTTCTCTTTCGAGTCATGCTCATAGAGTTCCATACAGTAGCGTGCATAAAGAAATGAGTCCGAATACTGCATTCCCAACATCCTGTAATGCAGAGCGGTGAGCTTGAAGCGGATAATGGCCAAAAATCGGAAACCGAATGAAAACGGAAGATCAAAATGAGCTGAAAAAGTGTATTTTAAGTTCCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTCTTAAAATAACGAAGTGCAAGGAAAAATCCAGCACCAGTCAAGCCAACGACAACTGCTCCAGCCAGTGCAGCACCCAAATAACTGAAAATTCAAAATTCGAAGGGTTGAAAAAAGAATAACTCACATCGATAACCCATTTTGTTCCTTAACAACTACTGGATGAGCCAAGCTGGAATTGTGAGGAGCTGTCAAGTTTTGAGCAGGCGGAGCCATTGCCGAAGAAAAGTTGGCAAAAAACAATTCCATTTTGCTCAGTGAATCTGCGGATTTTCCAATGTCTGACTGGTGGCTATCATAGTCCAGACCCATAGAATCCAGCGAATCGAGTTTTGTTTTGAATTCCAAAAGTTCCGACTTCTTGGAAGACGTCTTCGACATCTTCTCAACTGATCTACCAATCGCTCCAAAATCCAAAGAGAGTCCATTGATCGATTCCGCAAGAGTGAAATTCAGGGAAGTGAGATTCGTCGAGTTCGAAACTTTGGCAGAAGATTTGATCCTGTCAACATCTCG</canonical>
            <polymorphic>AGCAACTTTGACCCAATTTATCTCGGATACGGTAGGAGATATTAAAAAGTTGTTCACTAAAAACATGTTTAGATTAATATGAGTAACACTTCATCAGTTGACCACTTTTTGATATCTGCCACAGAAAATAAGATATACGGGCTCAAAGCTGAAGGTTGAATGAATTCAGCTAAGCTACGGTAGGACAGCTAAATTCAATCAAAGATAATATTCCTCTTACTTGTCATAGTCGAATTCGGGTGTCACCGTTCCGGCGTTTTCTTCCTCGTTCTCTTTCGAGTCATGCTCATAGAGTTCCATACAGTAGCGTGCATAAAGAAATGAGTCCGAATACTGCATTCCCAACATCCTGTAATGCAGAGCGGTGAGCTTGAAGCGGATAATGGCCAAAAATCGGAAACCGAATGAAAACGGAAGATCAAAATGAGCTGAAAAAGTGTATTTTAAGTTCCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTCTTAAAATAACGAMGTGCAAGGAAAAATCCAGCACCAGTCAAGCCAACGACAACTGCTCCAGCCAGTGCAGCACCCAAATAACTGAAAATTCAAAATTCGAAGGGTTGAAAAAAGAATAACTCACATCGATAACCCATTTTGTTCCTTAACAACTACTGGATGAGCCAAGCTGGAATTGTGAGGAGCTGTCAAGTTTTGAGCAGGCGGAGCCATTGCCGAAGAAAAGTTGGCAAAAAACAATTCCATTTTGCTCAGTGAATCTGCGGATTTTCCAATGTCTGACTGGTGGCTATCATAGTCCAGACCCATAGAATCCAGCGAATCGAGTTTTGTTTTGAATTCCAAAAGTTCCGACTTCTTGGAAGACGTCTTCGACATCTTCTCAACTGATCTACCAATCGCTCCAAAATCCAAAGAGAGTCCATTGATCGATTCCGCAAGAGTGAAATTCAGGGAAGTGAGATTCGTCGAGTTCGAAACTTTGGCAGAAGATTTGATCCTGTCAACATCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCCAACATCCTGTAATG</pcr_primer_p1>
		<pcr_primer_p2>TCGAATTTTGAATTTTCAGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCCCAACATCCTGTAATGCAGAGCGGTGAGCTTGAAGCGGATAATGGCCAAAAATCGGAAACCGAATGAAAACGGAAGATCAAAATGAGCTGAAAAAGTGTATTTTAAGTTCCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTCTTAAAATAACGAAGTGCAAGGAAAAATCCAGCACCAGTCAAGCCAACGACAACTGCTCCAGCCAGTGCAGCACCCAAATAACTGAAAATTCAAAATTCGA</canonical_amplicon>
		<polymorphic_amplicon>ATTCCCAACATCCTGTAATGCAGAGCGGTGAGCTTGAAGCGGATAATGGCCAAAAATCGGAAACCGAATGAAAACGGAAGATCAAAATGAGCTGAAAAAGTGTATTTTAAGTTCCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTCTTAAAATAACGAMGTGCAAGGAAAAATCCAGCACCAGTCAAGCCAACGACAACTGCTCCAGCCAGTGCAGCACCCAAATAACTGAAAATTCAAAATTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20965</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>287554</contig_pos>
        <strand>+</strand>
        <context>AGCTGAAAAA[A/G]TGTATTTTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAAAAATCGGAAACCGAATGAAAACGGAAGATCAAAATGAGCTGAAAAA</left_flank>
        <right_flank>TGTATTTTAAGTTCCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACCAAGATAAATAAGCTTAAAGTTGAGAAGTTGACAGCCGACCGCGTGGCTCAGAAGGGCGAGCAACTTTGACCCAATTTATCTCGGATACGGTAGGAGATATTAAAAAGTTGTTCACTAAAAACATGTTTAGATTAATATGAGTAACACTTCATCAGTTGACCACTTTTTGATATCTGCCACAGAAAATAAGATATACGGGCTCAAAGCTGAAGGTTGAATGAATTCAGCTAAGCTACGGTAGGACAGCTAAATTCAATCAAAGATAATATTCCTCTTACTTGTCATAGTCGAATTCGGGTGTCACCGTTCCGGCGTTTTCTTCCTCGTTCTCTTTCGAGTCATGCTCATAGAGTTCCATACAGTAGCGTGCATAAAGAAATGAGTCCGAATACTGCATTCCCAACATCCTGTAATGCAGAGCGGTGAGCTTGAAGCGGATAATGGCCAAAAATCGGAAACCGAATGAAAACGGAAGATCAAAATGAGCTGAAAAAGTGTATTTTAAGTTCCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTCTTAAAATAACGAAGTGCAAGGAAAAATCCAGCACCAGTCAAGCCAACGACAACTGCTCCAGCCAGTGCAGCACCCAAATAACTGAAAATTCAAAATTCGAAGGGTTGAAAAAAGAATAACTCACATCGATAACCCATTTTGTTCCTTAACAACTACTGGATGAGCCAAGCTGGAATTGTGAGGAGCTGTCAAGTTTTGAGCAGGCGGAGCCATTGCCGAAGAAAAGTTGGCAAAAAACAATTCCATTTTGCTCAGTGAATCTGCGGATTTTCCAATGTCTGACTGGTGGCTATCATAGTCCAGACCCATAGAATCCAGCGAATCGAGTTTTGTTTTGAATTCCAAAAGTTCCGACTTCTTGGAAGACGTCTTCGACATCTTCTCAACTGATCTACCAATCGCTCCAAAATCCAAAGAGAGTCCATTGATCGATTCCGCAAGAGTGAAATT</canonical>
            <polymorphic>TAACCAAGATAAATAAGCTTAAAGTTGAGAAGTTGACAGCCGACCGCGTGGCTCAGAAGGGCGAGCAACTTTGACCCAATTTATCTCGGATACGGTAGGAGATATTAAAAAGTTGTTCACTAAAAACATGTTTAGATTAATATGAGTAACACTTCATCAGTTGACCACTTTTTGATATCTGCCACAGAAAATAAGATATACGGGCTCAAAGCTGAAGGTTGAATGAATTCAGCTAAGCTACGGTAGGACAGCTAAATTCAATCAAAGATAATATTCCTCTTACTTGTCATAGTCGAATTCGGGTGTCACCGTTCCGGCGTTTTCTTCCTCGTTCTCTTTCGAGTCATGCTCATAGAGTTCCATACAGTAGCGTGCATAAAGAAATGAGTCCGAATACTGCATTCCCAACATCCTGTAATGCAGAGCGGTGAGCTTGAAGCGGATAATGGCCAAAAATCGGAAACCGAATGAAAACGGAAGATCAAAATGAGCTGAAAAARTGTATTTTAAGTTCCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTCTTAAAATAACGAAGTGCAAGGAAAAATCCAGCACCAGTCAAGCCAACGACAACTGCTCCAGCCAGTGCAGCACCCAAATAACTGAAAATTCAAAATTCGAAGGGTTGAAAAAAGAATAACTCACATCGATAACCCATTTTGTTCCTTAACAACTACTGGATGAGCCAAGCTGGAATTGTGAGGAGCTGTCAAGTTTTGAGCAGGCGGAGCCATTGCCGAAGAAAAGTTGGCAAAAAACAATTCCATTTTGCTCAGTGAATCTGCGGATTTTCCAATGTCTGACTGGTGGCTATCATAGTCCAGACCCATAGAATCCAGCGAATCGAGTTTTGTTTTGAATTCCAAAAGTTCCGACTTCTTGGAAGACGTCTTCGACATCTTCTCAACTGATCTACCAATCGCTCCAAAATCCAAAGAGAGTCCATTGATCGATTCCGCAAGAGTGAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>157 121 77 72 69 66 57 56 51 50 36 34 32 31 28 17 17 16 5 5 3</canonical_bands>
                <polymorphic_bands>157 121 108 77 69 66 57 56 51 50 34 32 31 28 17 17 16 5 5 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCCCAACATCCTGTAATG</pcr_primer_p1>
		<pcr_primer_p2>TCGAATTTTGAATTTTCAGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCCCAACATCCTGTAATGCAGAGCGGTGAGCTTGAAGCGGATAATGGCCAAAAATCGGAAACCGAATGAAAACGGAAGATCAAAATGAGCTGAAAAAGTGTATTTTAAGTTCCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTCTTAAAATAACGAAGTGCAAGGAAAAATCCAGCACCAGTCAAGCCAACGACAACTGCTCCAGCCAGTGCAGCACCCAAATAACTGAAAATTCAAAATTCGA</canonical_amplicon>
		<polymorphic_amplicon>ATTCCCAACATCCTGTAATGCAGAGCGGTGAGCTTGAAGCGGATAATGGCCAAAAATCGGAAACCGAATGAAAACGGAAGATCAAAATGAGCTGAAAAARTGTATTTTAAGTTCCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTCTTAAAATAACGAAGTGCAAGGAAAAATCCAGCACCAGTCAAGCCAACGACAACTGCTCCAGCCAGTGCAGCACCCAAATAACTGAAAATTCAAAATTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20966</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>287542</contig_pos>
        <strand>+</strand>
        <context>AAGATCAAAA[C/T]GAGCTGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCGGATAATGGCCAAAAATCGGAAACCGAATGAAAACGGAAGATCAAAA</left_flank>
        <right_flank>GAGCTGAAAAAGTGTATTTTAAGTTCCTCAACTTCCAGGAAAAAGACTCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCTTTTACAATAACCAAGATAAATAAGCTTAAAGTTGAGAAGTTGACAGCCGACCGCGTGGCTCAGAAGGGCGAGCAACTTTGACCCAATTTATCTCGGATACGGTAGGAGATATTAAAAAGTTGTTCACTAAAAACATGTTTAGATTAATATGAGTAACACTTCATCAGTTGACCACTTTTTGATATCTGCCACAGAAAATAAGATATACGGGCTCAAAGCTGAAGGTTGAATGAATTCAGCTAAGCTACGGTAGGACAGCTAAATTCAATCAAAGATAATATTCCTCTTACTTGTCATAGTCGAATTCGGGTGTCACCGTTCCGGCGTTTTCTTCCTCGTTCTCTTTCGAGTCATGCTCATAGAGTTCCATACAGTAGCGTGCATAAAGAAATGAGTCCGAATACTGCATTCCCAACATCCTGTAATGCAGAGCGGTGAGCTTGAAGCGGATAATGGCCAAAAATCGGAAACCGAATGAAAACGGAAGATCAAAATGAGCTGAAAAAGTGTATTTTAAGTTCCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTCTTAAAATAACGAAGTGCAAGGAAAAATCCAGCACCAGTCAAGCCAACGACAACTGCTCCAGCCAGTGCAGCACCCAAATAACTGAAAATTCAAAATTCGAAGGGTTGAAAAAAGAATAACTCACATCGATAACCCATTTTGTTCCTTAACAACTACTGGATGAGCCAAGCTGGAATTGTGAGGAGCTGTCAAGTTTTGAGCAGGCGGAGCCATTGCCGAAGAAAAGTTGGCAAAAAACAATTCCATTTTGCTCAGTGAATCTGCGGATTTTCCAATGTCTGACTGGTGGCTATCATAGTCCAGACCCATAGAATCCAGCGAATCGAGTTTTGTTTTGAATTCCAAAAGTTCCGACTTCTTGGAAGACGTCTTCGACATCTTCTCAACTGATCTACCAATCGCTCCAAAATCCAAAGAGAGTCCATTGATCGATTCCGC</canonical>
            <polymorphic>TATCTTTTACAATAACCAAGATAAATAAGCTTAAAGTTGAGAAGTTGACAGCCGACCGCGTGGCTCAGAAGGGCGAGCAACTTTGACCCAATTTATCTCGGATACGGTAGGAGATATTAAAAAGTTGTTCACTAAAAACATGTTTAGATTAATATGAGTAACACTTCATCAGTTGACCACTTTTTGATATCTGCCACAGAAAATAAGATATACGGGCTCAAAGCTGAAGGTTGAATGAATTCAGCTAAGCTACGGTAGGACAGCTAAATTCAATCAAAGATAATATTCCTCTTACTTGTCATAGTCGAATTCGGGTGTCACCGTTCCGGCGTTTTCTTCCTCGTTCTCTTTCGAGTCATGCTCATAGAGTTCCATACAGTAGCGTGCATAAAGAAATGAGTCCGAATACTGCATTCCCAACATCCTGTAATGCAGAGCGGTGAGCTTGAAGCGGATAATGGCCAAAAATCGGAAACCGAATGAAAACGGAAGATCAAAAYGAGCTGAAAAAGTGTATTTTAAGTTCCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTCTTAAAATAACGAAGTGCAAGGAAAAATCCAGCACCAGTCAAGCCAACGACAACTGCTCCAGCCAGTGCAGCACCCAAATAACTGAAAATTCAAAATTCGAAGGGTTGAAAAAAGAATAACTCACATCGATAACCCATTTTGTTCCTTAACAACTACTGGATGAGCCAAGCTGGAATTGTGAGGAGCTGTCAAGTTTTGAGCAGGCGGAGCCATTGCCGAAGAAAAGTTGGCAAAAAACAATTCCATTTTGCTCAGTGAATCTGCGGATTTTCCAATGTCTGACTGGTGGCTATCATAGTCCAGACCCATAGAATCCAGCGAATCGAGTTTTGTTTTGAATTCCAAAAGTTCCGACTTCTTGGAAGACGTCTTCGACATCTTCTCAACTGATCTACCAATCGCTCCAAAATCCAAAGAGAGTCCATTGATCGATTCCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCCAACATCCTGTAATG</pcr_primer_p1>
		<pcr_primer_p2>TCGAATTTTGAATTTTCAGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCCCAACATCCTGTAATGCAGAGCGGTGAGCTTGAAGCGGATAATGGCCAAAAATCGGAAACCGAATGAAAACGGAAGATCAAAATGAGCTGAAAAAGTGTATTTTAAGTTCCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTCTTAAAATAACGAAGTGCAAGGAAAAATCCAGCACCAGTCAAGCCAACGACAACTGCTCCAGCCAGTGCAGCACCCAAATAACTGAAAATTCAAAATTCGA</canonical_amplicon>
		<polymorphic_amplicon>ATTCCCAACATCCTGTAATGCAGAGCGGTGAGCTTGAAGCGGATAATGGCCAAAAATCGGAAACCGAATGAAAACGGAAGATCAAAAYGAGCTGAAAAAGTGTATTTTAAGTTCCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTCTTAAAATAACGAAGTGCAAGGAAAAATCCAGCACCAGTCAAGCCAACGACAACTGCTCCAGCCAGTGCAGCACCCAAATAACTGAAAATTCAAAATTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20967</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>295421</contig_pos>
        <strand></strand>
        <context>CTCAAAAATT[A/T]AAAAAAAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACAATTATAGAAAGTTCTCGACGACGAAGAGCCTGAAAAACTCAAAAATT</left_flank>
        <right_flank>AAAAAAAATCGATTTTTTGTAAAATAAAGTTCTTTGACCTACCTGAAAAA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACACTGAAACCATTTTGTTTCGAGTCGCCAGCTCATTTTTGGTTTTTTGGGTTACTGTAGCCGCAAACACCGCGCCAAACAACGTATCTTACGACAAGTTCTCTAATCTTGCTCATTTTTGATCTCCGGGGGTATTTTTAGCCGAGGAATTCAAATTTGATAGTGAATTTGAGATTAGATTTCTGTAGGGACCCGAAATTTGAACTTTTCGCTAATAAATCGATTTTTTTCCGGAAATCTGCTCAAAAAAACAACATTTTCTCTTTTTCAGCATTTTCGAATTTTAAGAAATATTTATTTCTTAGAGTAATTACAGTCATTCAAGGTTACAAGATAATTAATGATGAAATAGAAAAAAATCAATAAATCGATTTTTAGGTGGATGGGGAGGATGAGTGATCGGAAATCTCTACATCTGACTTTCGGCGGCAAATAAAGTATTCTGGGACAATTATAGAAAGTTCTCGACGACGAAGAGCCTGAAAAACTCAAAAATTAAAAAAAAATCGATTTTTTGTAAAATAAAGTTCTTTGACCTACCTGAAAAAAATGTGCAATATATATATTATAAAGATGCGAATTGGAGTTCGGGACCGTACCCGGAAAAAAGCGAATTAATGAAAAAAAATTGTATTAATTAATTGAAACATGTGTATTATACAAATTAGGTATAATTATGTATACATACAAATTGGCATGCTAGAAACTTGGCACAAAAGGAGGATTTTTCTAAATTCTGGAGATTTTTTGTGGGATTTAACTGCGAAATTTGAATTCAGGACGTTGAGAGCTTTGAAATGAGTATAATCATGACCTAATTTTGAAAATTTATATTTTTGGACCACCTATGCGCCTTTCAAGGCGACATTTCAAGTTTAAATAAACATAGTCGAGTTTGGGCTCATTTCGAAGGAAATTTCCTGCTTAATTTTTATTTGAAACGTAGAAAAATCTTAAATGAGTATAATCATGACATGCTTTGAAAAATGTTTGGGTCC</canonical>
            <polymorphic>TGACACTGAAACCATTTTGTTTCGAGTCGCCAGCTCATTTTTGGTTTTTTGGGTTACTGTAGCCGCAAACACCGCGCCAAACAACGTATCTTACGACAAGTTCTCTAATCTTGCTCATTTTTGATCTCCGGGGGTATTTTTAGCCGAGGAATTCAAATTTGATAGTGAATTTGAGATTAGATTTCTGTAGGGACCCGAAATTTGAACTTTTCGCTAATAAATCGATTTTTTTCCGGAAATCTGCTCAAAAAAACAACATTTTCTCTTTTTCAGCATTTTCGAATTTTAAGAAATATTTATTTCTTAGAGTAATTACAGTCATTCAAGGTTACAAGATAATTAATGATGAAATAGAAAAAAATCAATAAATCGATTTTTAGGTGGATGGGGAGGATGAGTGATCGGAAATCTCTACATCTGACTTTCGGCGGCAAATAAAGTATTCTGGGACAATTATAGAAAGTTCTCGACGACGAAGAGCCTGAAAAACTCAAAAATTWAAAAAAAATCGATTTTTTGTAAAATAAAGTTCTTTGACCTACCTGAAAAAAATGTGCAATATATATATTATAAAGATGCGAATTGGAGTTCGGGACCGTACCCGGAAAAAAGCGAATTAATGAAAAAAAATTGTATTAATTAATTGAAACATGTGTATTATACAAATTAGGTATAATTATGTATACATACAAATTGGCATGCTAGAAACTTGGCACAAAAGGAGGATTTTTCTAAATTCTGGAGATTTTTTGTGGGATTTAACTGCGAAATTTGAATTCAGGACGTTGAGAGCTTTGAAATGAGTATAATCATGACCTAATTTTGAAAATTTATATTTTTGGACCACCTATGCGCCTTTCAAGGCGACATTTCAAGTTTAAATAAACATAGTCGAGTTTGGGCTCATTTCGAAGGAAATTTCCTGCTTAATTTTTATTTGAAACGTAGAAAAATCTTAAATGAGTATAATCATGACATGCTTTGAAAAATGTTTGGGTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>286 158 119 119 119 54 49 44 29 19 4</canonical_bands>
                <polymorphic_bands>286 277 119 119 54 49 44 29 19 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGGGACAATTATAGAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTAGCATGCCAATTTGT</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGGGACAATTATAGAAAGTTCTCGACGACGAAGAGCCTGAAAAACTCAAAAATTAAAAAAAAATCGATTTTTTGTAAAATAAAGTTCTTTGACCTACCTGAAAAAAATGTGCAATATATATATTATAAAGATGCGAATTGGAGTTCGGGACCGTACCCGGAAAAAAGCGAATTAATGAAAAAAAATTGTATTAATTAATTGAAACATGTGTATTATACAAATTAGGTATAATTATGTATACATACAAATTGGCATGCTAGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGGGACAATTATAGAAAGTTCTCGACGACGAAGAGCCTGAAAAACTCAAAAATTWAAAAAAAATCGATTTTTTGTAAAATAAAGTTCTTTGACCTACCTGAAAAAAATGTGCAATATATATATTATAAAGATGCGAATTGGAGTTCGGGACCGTACCCGGAAAAAAGCGAATTAATGAAAAAAAATTGTATTAATTAATTGAAACATGTGTATTATACAAATTAGGTATAATTATGTATACATACAAATTGGCATGCTAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20968</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>295450</contig_pos>
        <strand>+</strand>
        <context>GTAAAATAAA[A/G]TTCTTTGACC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCCTGAAAAACTCAAAAATTAAAAAAAAATCGATTTTTTGTAAAATAAA</left_flank>
        <right_flank>TTCTTTGACCTACCTGAAAAAAATGTGCAATATATATATTATAAAGATGC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGCTCATTTTTGGTTTTTTGGGTTACTGTAGCCGCAAACACCGCGCCAAACAACGTATCTTACGACAAGTTCTCTAATCTTGCTCATTTTTGATCTCCGGGGGTATTTTTAGCCGAGGAATTCAAATTTGATAGTGAATTTGAGATTAGATTTCTGTAGGGACCCGAAATTTGAACTTTTCGCTAATAAATCGATTTTTTTCCGGAAATCTGCTCAAAAAAACAACATTTTCTCTTTTTCAGCATTTTCGAATTTTAAGAAATATTTATTTCTTAGAGTAATTACAGTCATTCAAGGTTACAAGATAATTAATGATGAAATAGAAAAAAATCAATAAATCGATTTTTAGGTGGATGGGGAGGATGAGTGATCGGAAATCTCTACATCTGACTTTCGGCGGCAAATAAAGTATTCTGGGACAATTATAGAAAGTTCTCGACGACGAAGAGCCTGAAAAACTCAAAAATTAAAAAAAAATCGATTTTTTGTAAAATAAAGTTCTTTGACCTACCTGAAAAAAATGTGCAATATATATATTATAAAGATGCGAATTGGAGTTCGGGACCGTACCCGGAAAAAAGCGAATTAATGAAAAAAAATTGTATTAATTAATTGAAACATGTGTATTATACAAATTAGGTATAATTATGTATACATACAAATTGGCATGCTAGAAACTTGGCACAAAAGGAGGATTTTTCTAAATTCTGGAGATTTTTTGTGGGATTTAACTGCGAAATTTGAATTCAGGACGTTGAGAGCTTTGAAATGAGTATAATCATGACCTAATTTTGAAAATTTATATTTTTGGACCACCTATGCGCCTTTCAAGGCGACATTTCAAGTTTAAATAAACATAGTCGAGTTTGGGCTCATTTCGAAGGAAATTTCCTGCTTAATTTTTATTTGAAACGTAGAAAAATCTTAAATGAGTATAATCATGACATGCTTTGAAAAATGTTTGGGTCCCGACACGAAAAAAAGTGAAATTACCGTAT</canonical>
            <polymorphic>CCAGCTCATTTTTGGTTTTTTGGGTTACTGTAGCCGCAAACACCGCGCCAAACAACGTATCTTACGACAAGTTCTCTAATCTTGCTCATTTTTGATCTCCGGGGGTATTTTTAGCCGAGGAATTCAAATTTGATAGTGAATTTGAGATTAGATTTCTGTAGGGACCCGAAATTTGAACTTTTCGCTAATAAATCGATTTTTTTCCGGAAATCTGCTCAAAAAAACAACATTTTCTCTTTTTCAGCATTTTCGAATTTTAAGAAATATTTATTTCTTAGAGTAATTACAGTCATTCAAGGTTACAAGATAATTAATGATGAAATAGAAAAAAATCAATAAATCGATTTTTAGGTGGATGGGGAGGATGAGTGATCGGAAATCTCTACATCTGACTTTCGGCGGCAAATAAAGTATTCTGGGACAATTATAGAAAGTTCTCGACGACGAAGAGCCTGAAAAACTCAAAAATTAAAAAAAAATCGATTTTTTGTAAAATAAARTTCTTTGACCTACCTGAAAAAAATGTGCAATATATATATTATAAAGATGCGAATTGGAGTTCGGGACCGTACCCGGAAAAAAGCGAATTAATGAAAAAAAATTGTATTAATTAATTGAAACATGTGTATTATACAAATTAGGTATAATTATGTATACATACAAATTGGCATGCTAGAAACTTGGCACAAAAGGAGGATTTTTCTAAATTCTGGAGATTTTTTGTGGGATTTAACTGCGAAATTTGAATTCAGGACGTTGAGAGCTTTGAAATGAGTATAATCATGACCTAATTTTGAAAATTTATATTTTTGGACCACCTATGCGCCTTTCAAGGCGACATTTCAAGTTTAAATAAACATAGTCGAGTTTGGGCTCATTTCGAAGGAAATTTCCTGCTTAATTTTTATTTGAAACGTAGAAAAATCTTAAATGAGTATAATCATGACATGCTTTGAAAAATGTTTGGGTCCCGACACGAAAAAAAGTGAAATTACCGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGGGACAATTATAGAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTAGCATGCCAATTTGT</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGGGACAATTATAGAAAGTTCTCGACGACGAAGAGCCTGAAAAACTCAAAAATTAAAAAAAAATCGATTTTTTGTAAAATAAAGTTCTTTGACCTACCTGAAAAAAATGTGCAATATATATATTATAAAGATGCGAATTGGAGTTCGGGACCGTACCCGGAAAAAAGCGAATTAATGAAAAAAAATTGTATTAATTAATTGAAACATGTGTATTATACAAATTAGGTATAATTATGTATACATACAAATTGGCATGCTAGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGGGACAATTATAGAAAGTTCTCGACGACGAAGAGCCTGAAAAACTCAAAAATTAAAAAAAAATCGATTTTTTGTAAAATAAARTTCTTTGACCTACCTGAAAAAAATGTGCAATATATATATTATAAAGATGCGAATTGGAGTTCGGGACCGTACCCGGAAAAAAGCGAATTAATGAAAAAAAATTGTATTAATTAATTGAAACATGTGTATTATACAAATTAGGTATAATTATGTATACATACAAATTGGCATGCTAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20969</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>295545</contig_pos>
        <strand>+</strand>
        <context>GAATTAATGA[A/G]AAAAAATTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGATGCGAATTGGAGTTCGGGACCGTACCCGGAAAAAAGCGAATTAATGA</left_flank>
        <right_flank>AAAAAATTGTATTAATTAATTGAAACATGTGTATTATACAAATTAGGTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCCGGGGGTATTTTTAGCCGAGGAATTCAAATTTGATAGTGAATTTGAGATTAGATTTCTGTAGGGACCCGAAATTTGAACTTTTCGCTAATAAATCGATTTTTTTCCGGAAATCTGCTCAAAAAAACAACATTTTCTCTTTTTCAGCATTTTCGAATTTTAAGAAATATTTATTTCTTAGAGTAATTACAGTCATTCAAGGTTACAAGATAATTAATGATGAAATAGAAAAAAATCAATAAATCGATTTTTAGGTGGATGGGGAGGATGAGTGATCGGAAATCTCTACATCTGACTTTCGGCGGCAAATAAAGTATTCTGGGACAATTATAGAAAGTTCTCGACGACGAAGAGCCTGAAAAACTCAAAAATTAAAAAAAAATCGATTTTTTGTAAAATAAAGTTCTTTGACCTACCTGAAAAAAATGTGCAATATATATATTATAAAGATGCGAATTGGAGTTCGGGACCGTACCCGGAAAAAAGCGAATTAATGAAAAAAAATTGTATTAATTAATTGAAACATGTGTATTATACAAATTAGGTATAATTATGTATACATACAAATTGGCATGCTAGAAACTTGGCACAAAAGGAGGATTTTTCTAAATTCTGGAGATTTTTTGTGGGATTTAACTGCGAAATTTGAATTCAGGACGTTGAGAGCTTTGAAATGAGTATAATCATGACCTAATTTTGAAAATTTATATTTTTGGACCACCTATGCGCCTTTCAAGGCGACATTTCAAGTTTAAATAAACATAGTCGAGTTTGGGCTCATTTCGAAGGAAATTTCCTGCTTAATTTTTATTTGAAACGTAGAAAAATCTTAAATGAGTATAATCATGACATGCTTTGAAAAATGTTTGGGTCCCGACACGAAAAAAAGTGAAATTACCGTATCTCGGTCAGTTTTGCTTCGAATTTCATGAAAAGTATACGGTTTTGCTCATTTTCTCAAGAGCTTAATAACGACTATAATCATGACCTACTTTTAA</canonical>
            <polymorphic>TCTCCGGGGGTATTTTTAGCCGAGGAATTCAAATTTGATAGTGAATTTGAGATTAGATTTCTGTAGGGACCCGAAATTTGAACTTTTCGCTAATAAATCGATTTTTTTCCGGAAATCTGCTCAAAAAAACAACATTTTCTCTTTTTCAGCATTTTCGAATTTTAAGAAATATTTATTTCTTAGAGTAATTACAGTCATTCAAGGTTACAAGATAATTAATGATGAAATAGAAAAAAATCAATAAATCGATTTTTAGGTGGATGGGGAGGATGAGTGATCGGAAATCTCTACATCTGACTTTCGGCGGCAAATAAAGTATTCTGGGACAATTATAGAAAGTTCTCGACGACGAAGAGCCTGAAAAACTCAAAAATTAAAAAAAAATCGATTTTTTGTAAAATAAAGTTCTTTGACCTACCTGAAAAAAATGTGCAATATATATATTATAAAGATGCGAATTGGAGTTCGGGACCGTACCCGGAAAAAAGCGAATTAATGARAAAAAATTGTATTAATTAATTGAAACATGTGTATTATACAAATTAGGTATAATTATGTATACATACAAATTGGCATGCTAGAAACTTGGCACAAAAGGAGGATTTTTCTAAATTCTGGAGATTTTTTGTGGGATTTAACTGCGAAATTTGAATTCAGGACGTTGAGAGCTTTGAAATGAGTATAATCATGACCTAATTTTGAAAATTTATATTTTTGGACCACCTATGCGCCTTTCAAGGCGACATTTCAAGTTTAAATAAACATAGTCGAGTTTGGGCTCATTTCGAAGGAAATTTCCTGCTTAATTTTTATTTGAAACGTAGAAAAATCTTAAATGAGTATAATCATGACATGCTTTGAAAAATGTTTGGGTCCCGACACGAAAAAAAGTGAAATTACCGTATCTCGGTCAGTTTTGCTTCGAATTTCATGAAAAGTATACGGTTTTGCTCATTTTCTCAAGAGCTTAATAACGACTATAATCATGACCTACTTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGGGACAATTATAGAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTAGCATGCCAATTTGT</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGGGACAATTATAGAAAGTTCTCGACGACGAAGAGCCTGAAAAACTCAAAAATTAAAAAAAAATCGATTTTTTGTAAAATAAAGTTCTTTGACCTACCTGAAAAAAATGTGCAATATATATATTATAAAGATGCGAATTGGAGTTCGGGACCGTACCCGGAAAAAAGCGAATTAATGAAAAAAAATTGTATTAATTAATTGAAACATGTGTATTATACAAATTAGGTATAATTATGTATACATACAAATTGGCATGCTAGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGGGACAATTATAGAAAGTTCTCGACGACGAAGAGCCTGAAAAACTCAAAAATTAAAAAAAAATCGATTTTTTGTAAAATAAAGTTCTTTGACCTACCTGAAAAAAATGTGCAATATATATATTATAAAGATGCGAATTGGAGTTCGGGACCGTACCCGGAAAAAAGCGAATTAATGARAAAAAATTGTATTAATTAATTGAAACATGTGTATTATACAAATTAGGTATAATTATGTATACATACAAATTGGCATGCTAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20970</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>295601</contig_pos>
        <strand>+</strand>
        <context>GGTATAATTA[G/T]GTATACATAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTGTATTAATTAATTGAAACATGTGTATTATACAAATTAGGTATAATTA</left_flank>
        <right_flank>GTATACATACAAATTGGCATGCTAGAAACTTGGCACAAAAGGAGGATTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCTGTAGGGACCCGAAATTTGAACTTTTCGCTAATAAATCGATTTTTTTCCGGAAATCTGCTCAAAAAAACAACATTTTCTCTTTTTCAGCATTTTCGAATTTTAAGAAATATTTATTTCTTAGAGTAATTACAGTCATTCAAGGTTACAAGATAATTAATGATGAAATAGAAAAAAATCAATAAATCGATTTTTAGGTGGATGGGGAGGATGAGTGATCGGAAATCTCTACATCTGACTTTCGGCGGCAAATAAAGTATTCTGGGACAATTATAGAAAGTTCTCGACGACGAAGAGCCTGAAAAACTCAAAAATTAAAAAAAAATCGATTTTTTGTAAAATAAAGTTCTTTGACCTACCTGAAAAAAATGTGCAATATATATATTATAAAGATGCGAATTGGAGTTCGGGACCGTACCCGGAAAAAAGCGAATTAATGAAAAAAAATTGTATTAATTAATTGAAACATGTGTATTATACAAATTAGGTATAATTATGTATACATACAAATTGGCATGCTAGAAACTTGGCACAAAAGGAGGATTTTTCTAAATTCTGGAGATTTTTTGTGGGATTTAACTGCGAAATTTGAATTCAGGACGTTGAGAGCTTTGAAATGAGTATAATCATGACCTAATTTTGAAAATTTATATTTTTGGACCACCTATGCGCCTTTCAAGGCGACATTTCAAGTTTAAATAAACATAGTCGAGTTTGGGCTCATTTCGAAGGAAATTTCCTGCTTAATTTTTATTTGAAACGTAGAAAAATCTTAAATGAGTATAATCATGACATGCTTTGAAAAATGTTTGGGTCCCGACACGAAAAAAAGTGAAATTACCGTATCTCGGTCAGTTTTGCTTCGAATTTCATGAAAAGTATACGGTTTTGCTCATTTTCTCAAGAGCTTAATAACGACTATAATCATGACCTACTTTTAAGAGTTATCTATTTTTGCTTTTTTTGGCTCCCACCACGAAAAAGTTTAAAGCTACCG</canonical>
            <polymorphic>ATTTCTGTAGGGACCCGAAATTTGAACTTTTCGCTAATAAATCGATTTTTTTCCGGAAATCTGCTCAAAAAAACAACATTTTCTCTTTTTCAGCATTTTCGAATTTTAAGAAATATTTATTTCTTAGAGTAATTACAGTCATTCAAGGTTACAAGATAATTAATGATGAAATAGAAAAAAATCAATAAATCGATTTTTAGGTGGATGGGGAGGATGAGTGATCGGAAATCTCTACATCTGACTTTCGGCGGCAAATAAAGTATTCTGGGACAATTATAGAAAGTTCTCGACGACGAAGAGCCTGAAAAACTCAAAAATTAAAAAAAAATCGATTTTTTGTAAAATAAAGTTCTTTGACCTACCTGAAAAAAATGTGCAATATATATATTATAAAGATGCGAATTGGAGTTCGGGACCGTACCCGGAAAAAAGCGAATTAATGAAAAAAAATTGTATTAATTAATTGAAACATGTGTATTATACAAATTAGGTATAATTAKGTATACATACAAATTGGCATGCTAGAAACTTGGCACAAAAGGAGGATTTTTCTAAATTCTGGAGATTTTTTGTGGGATTTAACTGCGAAATTTGAATTCAGGACGTTGAGAGCTTTGAAATGAGTATAATCATGACCTAATTTTGAAAATTTATATTTTTGGACCACCTATGCGCCTTTCAAGGCGACATTTCAAGTTTAAATAAACATAGTCGAGTTTGGGCTCATTTCGAAGGAAATTTCCTGCTTAATTTTTATTTGAAACGTAGAAAAATCTTAAATGAGTATAATCATGACATGCTTTGAAAAATGTTTGGGTCCCGACACGAAAAAAAGTGAAATTACCGTATCTCGGTCAGTTTTGCTTCGAATTTCATGAAAAGTATACGGTTTTGCTCATTTTCTCAAGAGCTTAATAACGACTATAATCATGACCTACTTTTAAGAGTTATCTATTTTTGCTTTTTTTGGCTCCCACCACGAAAAAGTTTAAAGCTACCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTATAAAGATGCGAATTGGAGT</pcr_primer_p1>
		<pcr_primer_p2>AATTTAGAAAAATCCTCCTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>172</pcr_amplicon_size>
		<canonical_amplicon>ATTATAAAGATGCGAATTGGAGTTCGGGACCGTACCCGGAAAAAAGCGAATTAATGAAAAAAAATTGTATTAATTAATTGAAACATGTGTATTATACAAATTAGGTATAATTATGTATACATACAAATTGGCATGCTAGAAACTTGGCACAAAAGGAGGATTTTTCTAAATT</canonical_amplicon>
		<polymorphic_amplicon>ATTATAAAGATGCGAATTGGAGTTCGGGACCGTACCCGGAAAAAAGCGAATTAATGAAAAAAAATTGTATTAATTAATTGAAACATGTGTATTATACAAATTAGGTATAATTAKGTATACATACAAATTGGCATGCTAGAAACTTGGCACAAAAGGAGGATTTTTCTAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20994</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>430536</contig_pos>
        <strand>+</strand>
        <context>TCATTGCCTT[C/T]TTGGAATGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTT</left_flank>
        <right_flank>TTGGAATGTATGGCTATTAACTGGATCTACGGTGTCGATAATATGTTGGA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGCTATTAACTGGATCTACGGTGTCGATAATATGTTGGACAATGCGAAATGGATTGTGGGACACTGGCCACCTTGTTATATCTTTTGGAAGGTAAGTTTTCCCCCGGAAAGACCTAGAAGCTACCGTGTCTCGAGCTACAGTAACCCTCGACATTTGAAATTTGTACCAATCGACTTGGCTTGTTACCAGCTTTCAAATGAGTATAATCATGCCTAAGTCTGCAAAATTTTTTGGGTTACTGTAGTCTTTGTTTTTTTTTTGGATCAAACTACAGTAACCCGAAAAGATCTGCAAAGTGGTCATGATCATACTCATTTGAAAGCTCTAAATGAGACAAATCGATTGGTGCAAACTTCACATAAGTAGGATTACTGTGAATCGAGATACGGTAGCTTTGACTTTTGGGATGAAACTACAGTAACCCAAGAAGTTTACCAAAACTTGTCATGATTATACTCATTTGAAAGCCCTTGACAAGGCAAATCGAA</canonical>
            <polymorphic>TGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTYTTGGAATGTATGGCTATTAACTGGATCTACGGTGTCGATAATATGTTGGACAATGCGAAATGGATTGTGGGACACTGGCCACCTTGTTATATCTTTTGGAAGGTAAGTTTTCCCCCGGAAAGACCTAGAAGCTACCGTGTCTCGAGCTACAGTAACCCTCGACATTTGAAATTTGTACCAATCGACTTGGCTTGTTACCAGCTTTCAAATGAGTATAATCATGCCTAAGTCTGCAAAATTTTTTGGGTTACTGTAGTCTTTGTTTTTTTTTTGGATCAAACTACAGTAACCCGAAAAGATCTGCAAAGTGGTCATGATCATACTCATTTGAAAGCTCTAAATGAGACAAATCGATTGGTGCAAACTTCACATAAGTAGGATTACTGTGAATCGAGATACGGTAGCTTTGACTTTTGGGATGAAACTACAGTAACCCAAGAAGTTTACCAAAACTTGTCATGATTATACTCATTTGAAAGCCCTTGACAAGGCAAATCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCGGAATAGAAGACACGTACT</pcr_primer_p1>
		<pcr_primer_p2>CCTTCCAAAAGATATAACAAGGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGCTATTAACTGGATCTACGGTGTCGATAATATGTTGGACAATGCGAAATGGATTGTGGGACACTGGCCACCTTGTTATATCTTTTGGAAGG</canonical_amplicon>
		<polymorphic_amplicon>GTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTYTTGGAATGTATGGCTATTAACTGGATCTACGGTGTCGATAATATGTTGGACAATGCGAAATGGATTGTGGGACACTGGCCACCTTGTTATATCTTTTGGAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20995</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>430458</contig_pos>
        <strand>+</strand>
        <context>CAATTCCCTT[C/T]TGCTTGTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTT</left_flank>
        <right_flank>TGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGCTATTAACTGGATCTACGGTGTCGATAATATGTTGGACAATGCGAAATGGATTGTGGGACACTGGCCACCTTGTTATATCTTTTGGAAGGTAAGTTTTCCCCCGGAAAGACCTAGAAGCTACCGTGTCTCGAGCTACAGTAACCCTCGACATTTGAAATTTGTACCAATCGACTTGGCTTGTTACCAGCTTTCAAATGAGTATAATCATGCCTAAGTCTGCAAAATTTTTTGGGTTACTGTAGTCTTTGTTTTTTTTTTGGATCAAACTACAGTAACCCGAAAAGATCTGCAAAGTGGTCATGATCATACTCATTTGAAAGCTCTAAATGAGACAAATCGATTGGTGCAAACTTCACATAAGTAGGATTACTGTGAATCGAGATACGGTAGCTTTGACTTTTGGGATGA</canonical>
            <polymorphic>CAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTYTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGCTATTAACTGGATCTACGGTGTCGATAATATGTTGGACAATGCGAAATGGATTGTGGGACACTGGCCACCTTGTTATATCTTTTGGAAGGTAAGTTTTCCCCCGGAAAGACCTAGAAGCTACCGTGTCTCGAGCTACAGTAACCCTCGACATTTGAAATTTGTACCAATCGACTTGGCTTGTTACCAGCTTTCAAATGAGTATAATCATGCCTAAGTCTGCAAAATTTTTTGGGTTACTGTAGTCTTTGTTTTTTTTTTGGATCAAACTACAGTAACCCGAAAAGATCTGCAAAGTGGTCATGATCATACTCATTTGAAAGCTCTAAATGAGACAAATCGATTGGTGCAAACTTCACATAAGTAGGATTACTGTGAATCGAGATACGGTAGCTTTGACTTTTGGGATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCGGAATAGAAGACACGTACT</pcr_primer_p1>
		<pcr_primer_p2>CCTTCCAAAAGATATAACAAGGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGCTATTAACTGGATCTACGGTGTCGATAATATGTTGGACAATGCGAAATGGATTGTGGGACACTGGCCACCTTGTTATATCTTTTGGAAGG</canonical_amplicon>
		<polymorphic_amplicon>GTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTYTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGCTATTAACTGGATCTACGGTGTCGATAATATGTTGGACAATGCGAAATGGATTGTGGGACACTGGCCACCTTGTTATATCTTTTGGAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20996</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>430389</contig_pos>
        <strand>+</strand>
        <context>ATCCAGAACG[A/T]CTCCGTCGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACG</left_flank>
        <right_flank>CTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGCTATTAACTGGATCTACGGTGTCGATAATATGTTGGACAATGCGAAATGGATTGTGGGACACTGGCCACCTTGTTATATCTTTTGGAAGGTAAGTTTTCCCCCGGAAAGACCTAGAAGCTACCGTGTCTCGAGCTACAGTAACCCTCGACATTTGAAATTTGTACCAATCGACTTGGCTTGTTACCAGCTTTCAAATGAGTATAATCATGCCTAAGTCTGCAAAATTTTTTGGGTTACTGTAGTCTTTGTTTTTTTTTTGGATCAAACTACAGTAACCCGAAAAGATCTGCAAAGTGGTCATGATCATACTCATTTGAAAGCTCTAAATGAGACAAATCG</canonical>
            <polymorphic>TGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGWCTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGCTATTAACTGGATCTACGGTGTCGATAATATGTTGGACAATGCGAAATGGATTGTGGGACACTGGCCACCTTGTTATATCTTTTGGAAGGTAAGTTTTCCCCCGGAAAGACCTAGAAGCTACCGTGTCTCGAGCTACAGTAACCCTCGACATTTGAAATTTGTACCAATCGACTTGGCTTGTTACCAGCTTTCAAATGAGTATAATCATGCCTAAGTCTGCAAAATTTTTTGGGTTACTGTAGTCTTTGTTTTTTTTTTGGATCAAACTACAGTAACCCGAAAAGATCTGCAAAGTGGTCATGATCATACTCATTTGAAAGCTCTAAATGAGACAAATCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNGTC</site>
                <isoschizomers>
                    <enzyme>AspI</enzyme>
                    <enzyme>PflFI</enzyme>
                    <enzyme>PsyI</enzyme>
                    <enzyme>TelI</enzyme>
                    <enzyme>Tth111I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>501 247 172 80</canonical_bands>
                <polymorphic_bands>581 247 172</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTTCGTAGTGGAAACGATAG</pcr_primer_p1>
		<pcr_primer_p2>CAACATATTATCGACACCGTAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGCTATTAACTGGATCTACGGTGTCGATAATATGTTG</canonical_amplicon>
		<polymorphic_amplicon>ATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGWCTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGCTATTAACTGGATCTACGGTGTCGATAATATGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20997</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>430246</contig_pos>
        <strand>+</strand>
        <context>GTAACCCTTC[C/T]AAAAAAGGCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTC</left_flank>
        <right_flank>AAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGCTATTAACTGGATCTACGGTGTCGATAATATGTTGGACAATGCGAAATGGATTGTGGGACACTGGCCACCTTGTTATATCTTTTGGAAGGTAAGTTTTCCCCCGGAAAGACCTAGAAGCTACCGTGTCTCGAGCTACAGTAACCCTCGACATTTGAAATTTGTACCAATCGACTTGGCTTGTTACCAGCTTTCAAAT</canonical>
            <polymorphic>ATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCYAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGCTATTAACTGGATCTACGGTGTCGATAATATGTTGGACAATGCGAAATGGATTGTGGGACACTGGCCACCTTGTTATATCTTTTGGAAGGTAAGTTTTCCCCCGGAAAGACCTAGAAGCTACCGTGTCTCGAGCTACAGTAACCCTCGACATTTGAAATTTGTACCAATCGACTTGGCTTGTTACCAGCTTTCAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTACAGTAACCCAAAATGTTC</pcr_primer_p1>
		<pcr_primer_p2>CTCGTCACAAAGAGAGGATACTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAG</canonical_amplicon>
		<polymorphic_amplicon>GCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCYAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20998</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>437612</contig_pos>
        <strand></strand>
        <context>GAATCAGACA[A/G]TGTCTTGAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAACTTTTTGCGCTGATTTCGTATTTGATGATAGTTTTCGAATCAGACA</left_flank>
        <right_flank>TGTCTTGAGGGCTTAAAAATTCAAAAAAGGATTTAGGACAGCCGTAATCG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGTGCTCACTTGGAAAGATGGTCTCTGTTATCAGGAGTTTCGTCCGTATTTCCTCGTTTTCACTTTCTACATTTCCATCGTTCAATTGGCTCAGAATCAATATCAATCTGGATGCCTTCGACGCCTTCATTCCCTTGGACAGGGACATCAAATGGATATTACTGTCGAAGGATTCACCTCGTGGCAATTCAAAGGACTCACTTTCCTTTTGCCCTTTTTGACCGTTGGATATGTGAGTTTTGGGGGCTTATGAAGCAGTTTTTAGCTTTTAAAACTATGAAAATCGAACTCTGCGTAGCTGATTATCCCTTGACACTTATTTTCAGCGCGCTAGCACAAAGTGTCGTAAGATTAGGTGTTTCACTTGGTGTTTGCGTACTTTTGGCGCTACCGTAACCCCAGAAATCTCAAAATTGAGCTAGCAGGTTCTAGAAAACGCTGTCTAGCATAACTTTTTGCGCTGATTTCGTATTTGATGATAGTTTTCGAATCAGACAATGTCTTGAGGGCTTAAAAATTCAAAAAAGGATTTAGGACAGCCGTAATCGTCTTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGACACTTATTTTCAGCGCGCTAGCACAATTTGTCGTAAGATTAGGTGTTTGGCGTGGCGTTTGCGTACTTTCGGCGCTACCGTAATCCAAAAACCTTGAAAGTGAGCTAGAAAGTCCTGGAAAACGCTGTCTAGATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGACTGAATCTTGAGAATCTACATGCTCAAAAAGGGGATCAAGGAGAGCCTTAAGAGTGTTAAAAGTATCAAAATCGAACTCTGCGTAGCTGTTTACCCCCCGGAAACCAATTTTCAGCGCTCTAGCTCTAATTGTCGTAGGATTCGGTGTTTGGCGTGGTGTTTGCGTACTTTCGGCGCTACCGTAACCCAGCAATTTCAAAATTGAGCTAGGAAGTTCTAGAA</canonical>
            <polymorphic>ATAGTGCTCACTTGGAAAGATGGTCTCTGTTATCAGGAGTTTCGTCCGTATTTCCTCGTTTTCACTTTCTACATTTCCATCGTTCAATTGGCTCAGAATCAATATCAATCTGGATGCCTTCGACGCCTTCATTCCCTTGGACAGGGACATCAAATGGATATTACTGTCGAAGGATTCACCTCGTGGCAATTCAAAGGACTCACTTTCCTTTTGCCCTTTTTGACCGTTGGATATGTGAGTTTTGGGGGCTTATGAAGCAGTTTTTAGCTTTTAAAACTATGAAAATCGAACTCTGCGTAGCTGATTATCCCTTGACACTTATTTTCAGCGCGCTAGCACAAAGTGTCGTAAGATTAGGTGTTTCACTTGGTGTTTGCGTACTTTTGGCGCTACCGTAACCCCAGAAATCTCAAAATTGAGCTAGCAGGTTCTAGAAAACGCTGTCTAGCATAACTTTTTGCGCTGATTTCGTATTTGATGATAGTTTTCGAATCAGACARTGTCTTGAGGGCTTAAAAATTCAAAAAAGGATTTAGGACAGCCGTAATCGTCTTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGACACTTATTTTCAGCGCGCTAGCACAATTTGTCGTAAGATTAGGTGTTTGGCGTGGCGTTTGCGTACTTTCGGCGCTACCGTAATCCAAAAACCTTGAAAGTGAGCTAGAAAGTCCTGGAAAACGCTGTCTAGATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGACTGAATCTTGAGAATCTACATGCTCAAAAAGGGGATCAAGGAGAGCCTTAAGAGTGTTAAAAGTATCAAAATCGAACTCTGCGTAGCTGTTTACCCCCCGGAAACCAATTTTCAGCGCTCTAGCTCTAATTGTCGTAGGATTCGGTGTTTGGCGTGGTGTTTGCGTACTTTCGGCGCTACCGTAACCCAGCAATTTCAAAATTGAGCTAGGAAGTTCTAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGCTGATTATCCCTTGACA</pcr_primer_p1>
		<pcr_primer_p2>TTGATAGTTTCAAGACGATTACG</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>GTAGCTGATTATCCCTTGACACTTATTTTCAGCGCGCTAGCACAAAGTGTCGTAAGATTAGGTGTTTCACTTGGTGTTTGCGTACTTTTGGCGCTACCGTAACCCCAGAAATCTCAAAATTGAGCTAGCAGGTTCTAGAAAACGCTGTCTAGCATAACTTTTTGCGCTGATTTCGTATTTGATGATAGTTTTCGAATCAGACAATGTCTTGAGGGCTTAAAAATTCAAAAAAGGATTTAGGACAGCCGTAATCGTCTTGAAACTATCAA</canonical_amplicon>
		<polymorphic_amplicon>GTAGCTGATTATCCCTTGACACTTATTTTCAGCGCGCTAGCACAAAGTGTCGTAAGATTAGGTGTTTCACTTGGTGTTTGCGTACTTTTGGCGCTACCGTAACCCCAGAAATCTCAAAATTGAGCTAGCAGGTTCTAGAAAACGCTGTCTAGCATAACTTTTTGCGCTGATTTCGTATTTGATGATAGTTTTCGAATCAGACARTGTCTTGAGGGCTTAAAAATTCAAAAAAGGATTTAGGACAGCCGTAATCGTCTTGAAACTATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb20999</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>437710</contig_pos>
        <strand></strand>
        <context>TACCCATTGA[C/T]ACTTattttc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGTCTTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGA</left_flank>
        <right_flank>ACTTATTTTCAGCGCGCTAGCACAATTTGTCGTAAGATTAGGTGTTTGGC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAATATCAATCTGGATGCCTTCGACGCCTTCATTCCCTTGGACAGGGACATCAAATGGATATTACTGTCGAAGGATTCACCTCGTGGCAATTCAAAGGACTCACTTTCCTTTTGCCCTTTTTGACCGTTGGATATGTGAGTTTTGGGGGCTTATGAAGCAGTTTTTAGCTTTTAAAACTATGAAAATCGAACTCTGCGTAGCTGATTATCCCTTGACACTTATTTTCAGCGCGCTAGCACAAAGTGTCGTAAGATTAGGTGTTTCACTTGGTGTTTGCGTACTTTTGGCGCTACCGTAACCCCAGAAATCTCAAAATTGAGCTAGCAGGTTCTAGAAAACGCTGTCTAGCATAACTTTTTGCGCTGATTTCGTATTTGATGATAGTTTTCGAATCAGACAATGTCTTGAGGGCTTAAAAATTCAAAAAAGGATTTAGGACAGCCGTAATCGTCTTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGACACTTATTTTCAGCGCGCTAGCACAATTTGTCGTAAGATTAGGTGTTTGGCGTGGCGTTTGCGTACTTTCGGCGCTACCGTAATCCAAAAACCTTGAAAGTGAGCTAGAAAGTCCTGGAAAACGCTGTCTAGATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGACTGAATCTTGAGAATCTACATGCTCAAAAAGGGGATCAAGGAGAGCCTTAAGAGTGTTAAAAGTATCAAAATCGAACTCTGCGTAGCTGTTTACCCCCCGGAAACCAATTTTCAGCGCTCTAGCTCTAATTGTCGTAGGATTCGGTGTTTGGCGTGGTGTTTGCGTACTTTCGGCGCTACCGTAACCCAGCAATTTCAAAATTGAGCTAGGAAGTTCTAGAAAACGCCGCCTAGAGCAATTTTATGCGCTGATTTCGAATTTGAGAACAATTTTCCAAAATTTGCAGCTCTTCCAATTGTTCCTGGCCGGCAAACTGTAC</canonical>
            <polymorphic>TCAATATCAATCTGGATGCCTTCGACGCCTTCATTCCCTTGGACAGGGACATCAAATGGATATTACTGTCGAAGGATTCACCTCGTGGCAATTCAAAGGACTCACTTTCCTTTTGCCCTTTTTGACCGTTGGATATGTGAGTTTTGGGGGCTTATGAAGCAGTTTTTAGCTTTTAAAACTATGAAAATCGAACTCTGCGTAGCTGATTATCCCTTGACACTTATTTTCAGCGCGCTAGCACAAAGTGTCGTAAGATTAGGTGTTTCACTTGGTGTTTGCGTACTTTTGGCGCTACCGTAACCCCAGAAATCTCAAAATTGAGCTAGCAGGTTCTAGAAAACGCTGTCTAGCATAACTTTTTGCGCTGATTTCGTATTTGATGATAGTTTTCGAATCAGACAATGTCTTGAGGGCTTAAAAATTCAAAAAAGGATTTAGGACAGCCGTAATCGTCTTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGAYACTTATTTTCAGCGCGCTAGCACAATTTGTCGTAAGATTAGGTGTTTGGCGTGGCGTTTGCGTACTTTCGGCGCTACCGTAATCCAAAAACCTTGAAAGTGAGCTAGAAAGTCCTGGAAAACGCTGTCTAGATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGACTGAATCTTGAGAATCTACATGCTCAAAAAGGGGATCAAGGAGAGCCTTAAGAGTGTTAAAAGTATCAAAATCGAACTCTGCGTAGCTGTTTACCCCCCGGAAACCAATTTTCAGCGCTCTAGCTCTAATTGTCGTAGGATTCGGTGTTTGGCGTGGTGTTTGCGTACTTTCGGCGCTACCGTAACCCAGCAATTTCAAAATTGAGCTAGGAAGTTCTAGAAAACGCCGCCTAGAGCAATTTTATGCGCTGATTTCGAATTTGAGAACAATTTTCCAAAATTTGCAGCTCTTCCAATTGTTCCTGGCCGGCAAACTGTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>227 161 91 91 80 80 48 42 35 22 21 21 17 15 9 9 7 7 7 5 3 2</canonical_bands>
                <polymorphic_bands>248 161 91 91 80 80 48 42 35 22 21 17 15 9 9 7 7 7 5 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGTAATCGTCTTGAAACTATC</pcr_primer_p1>
		<pcr_primer_p2>TGTAGATTCTCAAGATTCAGTCAG</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>CCGTAATCGTCTTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGACACTTATTTTCAGCGCGCTAGCACAATTTGTCGTAAGATTAGGTGTTTGGCGTGGCGTTTGCGTACTTTCGGCGCTACCGTAATCCAAAAACCTTGAAAGTGAGCTAGAAAGTCCTGGAAAACGCTGTCTAGATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGACTGAATCTTGAGAATCTACA</canonical_amplicon>
		<polymorphic_amplicon>CCGTAATCGTCTTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGAYACTTATTTTCAGCGCGCTAGCACAATTTGTCGTAAGATTAGGTGTTTGGCGTGGCGTTTGCGTACTTTCGGCGCTACCGTAATCCAAAAACCTTGAAAGTGAGCTAGAAAGTCCTGGAAAACGCTGTCTAGATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGACTGAATCTTGAGAATCTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21000</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>440576</contig_pos>
        <strand>+</strand>
        <context>TCGCGAYGCC[A/G]ACTCTCTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGATAAGATTGCCGTAGATCTTCAGAGCTTTTGCAGTCATCGCGACGCC</left_flank>
        <right_flank>ACTCTCTGAAAATTGGAATTGGAAACTCCTTGAGCAAAGGCCATGAGCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCCGAGAGACTCGGCCACTGTCATTCCGGCCTCCGCGGCCGCTGCCTTCTTCTTCTTCCCGGCCTTCTTCTTCTTCTCCTTGGTATCTGGTGTCTTGGATCGTTTGCTCTTCTGTTGACTGATCGGTGCTTCAAGACTCAATCTCGACGGTCCGGCAACATTGGTATCAGACGTAGCCGTTCGCATTCCACCCACTTCCTGCTCGAGCTTCTGGATGTCCATTTCGTTGTTATCTCTTAGAGACATCACGTTGGAAGAGCTAGAAGCAGATGGTGTGGCTGGAGGTGGAGTTTGGGCCGCTTTCAACTCCAAGACCGTTTGCTTGTATTTCTTCTCCATCTCTTCTGCCTTCTGCTTATCCGTCATGTGATTTTTCGATGTCAATTTGGCGTCGATGGCTTTGAATGTCGCATCGGTGACTCCTTTCGCCAAATACTCCTTCGCTGGTACGATAAGATTGCCGTAGATCTTCAGAGCTTTTGCAGTCATCGCGACGCCAACTCTCTGAAAATTGGAATTGGAAACTCCTTGAGCAAAGGCCATGAGCAACTTTGAGCTCAATTATCTCGATTCTCGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATATTGTTCTTGTTAAGAAAAATATTTTATAAGTTGACACATTTTTGATAACTTTTGAAGGGACCGAGATAAATTGACTCAAAGTTAAACGGTCGGAAGCTGCAGCTCAGGCGGCGAGCAACTTCGAGCCCTTATATCTCTTCTCCTGTGAAAGTTATCAAAAATTCGTCAACTGATAAAATGTTTCCCATGAGATGAGATGTTTTTTATCAGTTGACAAATTTTGGGTATCTCATCAAACAGCTTAGATAATTGGGCTCTAAGAAAAAGGTTTAGGTGGGCTCTTATTAAGGGTAGTTTCCAGACCGTCATCTTTGAGCTCAATTATCTTGACTCCTTTGAAAAATATCAAAAATCGGTCAACTGATAAAATATTGCTCATCTTATGACA</canonical>
            <polymorphic>TCCCGAGAGACTCGGCCACTGTCATTCCGGCCTCCGCGGCCGCTGCCTTCTTCTTCTTCCCGGCCTTCTTCTTCTTCTCCTTGGTATCTGGTGTCTTGGATCGTTTGCTCTTCTGTTGACTGATCGGTGCTTCAAGACTCAATCTCGACGGTCCGGCAACATTGGTATCAGACGTAGCCGTTCGCATTCCACCCACTTCCTGCTCGAGCTTCTGGATGTCCATTTCGTTGTTATCTCTTAGAGACATCACGTTGGAAGAGCTAGAAGCAGATGGTGTGGCTGGAGGTGGAGTTTGGGCCGCTTTCAACTCCAAGACCGTTTGCTTGTATTTCTTCTCCATCTCTTCTGCCTTCTGCTTATCCGTCATGTGATTTTTCGATGTCAATTTGGCGTCGATGGCTTTGAATGTCGCATCGGTGACTCCTTTCGCCAAATACTCCTTCGCTGGTACGATAAGATTGCCGTAGATCTTCAGAGCTTTTGCAGTCATCGCGACGCCRACTCTCTGAAAATTGGAATTGGAAACTCCTTGAGCAAAGGCCATGAGCAACTTTGAGCTCAATTATCTCGATTCTCGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATATTGTTCTTGTTAAGAAAAATATTTTATAAGTTGACACATTTTTGATAACTTTTGAAGGGACCGAGATAAATTGACTCAAAGTTAAACGGTCGGAAGCTGCAGCTCAGGCGGCGAGCAACTTCGAGCCCTTATATCTCTTCTCCTGTGAAAGTTATCAAAAATTCGTCAACTGATAAAATGTTTCCCATGAGATGAGATGTTTTTTATCAGTTGACAAATTTTGGGTATCTCATCAAACAGCTTAGATAATTGGGCTCTAAGAAAAAGGTTTAGGTGGGCTCTTATTAAGGGTAGTTTCCAGACCGTCATCTTTGAGCTCAATTATCTTGACTCCTTTGAAAAATATCAAAAATCGGTCAACTGATAAAATATTGCTCATCTTATGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACGATAAGATTGCCGTAGA</pcr_primer_p1>
		<pcr_primer_p2>TTAAAAATGCCTAAAAACTACGA</pcr_primer_p2>
		<pcr_amplicon_size>660</pcr_amplicon_size>
		<canonical_amplicon>GTACGATAAGATTGCCGTAGATCTTCAGAGCTTTTGCAGTCATCGCGACGCCAACTCTCTGAAAATTGGAATTGG</canonical_amplicon>
		<polymorphic_amplicon>GTACGATAAGATTGCCGTAGATCTTCAGAGCTTTTGCAGTCATCGCGACGCCRACTCTCTGAAAATTGGAATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21001</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>440572</contig_pos>
        <strand>+</strand>
        <context>GTCATCGCGA[C/T]GCCRACTCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGTACGATAAGATTGCCGTAGATCTTCAGAGCTTTTGCAGTCATCGCGA</left_flank>
        <right_flank>GCCAACTCTCTGAAAATTGGAATTGGAAACTCCTTGAGCAAAGGCCATGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGTCCCGAGAGACTCGGCCACTGTCATTCCGGCCTCCGCGGCCGCTGCCTTCTTCTTCTTCCCGGCCTTCTTCTTCTTCTCCTTGGTATCTGGTGTCTTGGATCGTTTGCTCTTCTGTTGACTGATCGGTGCTTCAAGACTCAATCTCGACGGTCCGGCAACATTGGTATCAGACGTAGCCGTTCGCATTCCACCCACTTCCTGCTCGAGCTTCTGGATGTCCATTTCGTTGTTATCTCTTAGAGACATCACGTTGGAAGAGCTAGAAGCAGATGGTGTGGCTGGAGGTGGAGTTTGGGCCGCTTTCAACTCCAAGACCGTTTGCTTGTATTTCTTCTCCATCTCTTCTGCCTTCTGCTTATCCGTCATGTGATTTTTCGATGTCAATTTGGCGTCGATGGCTTTGAATGTCGCATCGGTGACTCCTTTCGCCAAATACTCCTTCGCTGGTACGATAAGATTGCCGTAGATCTTCAGAGCTTTTGCAGTCATCGCGACGCCAACTCTCTGAAAATTGGAATTGGAAACTCCTTGAGCAAAGGCCATGAGCAACTTTGAGCTCAATTATCTCGATTCTCGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATATTGTTCTTGTTAAGAAAAATATTTTATAAGTTGACACATTTTTGATAACTTTTGAAGGGACCGAGATAAATTGACTCAAAGTTAAACGGTCGGAAGCTGCAGCTCAGGCGGCGAGCAACTTCGAGCCCTTATATCTCTTCTCCTGTGAAAGTTATCAAAAATTCGTCAACTGATAAAATGTTTCCCATGAGATGAGATGTTTTTTATCAGTTGACAAATTTTGGGTATCTCATCAAACAGCTTAGATAATTGGGCTCTAAGAAAAAGGTTTAGGTGGGCTCTTATTAAGGGTAGTTTCCAGACCGTCATCTTTGAGCTCAATTATCTTGACTCCTTTGAAAAATATCAAAAATCGGTCAACTGATAAAATATTGCTCATCTTAT</canonical>
            <polymorphic>TGAGTCCCGAGAGACTCGGCCACTGTCATTCCGGCCTCCGCGGCCGCTGCCTTCTTCTTCTTCCCGGCCTTCTTCTTCTTCTCCTTGGTATCTGGTGTCTTGGATCGTTTGCTCTTCTGTTGACTGATCGGTGCTTCAAGACTCAATCTCGACGGTCCGGCAACATTGGTATCAGACGTAGCCGTTCGCATTCCACCCACTTCCTGCTCGAGCTTCTGGATGTCCATTTCGTTGTTATCTCTTAGAGACATCACGTTGGAAGAGCTAGAAGCAGATGGTGTGGCTGGAGGTGGAGTTTGGGCCGCTTTCAACTCCAAGACCGTTTGCTTGTATTTCTTCTCCATCTCTTCTGCCTTCTGCTTATCCGTCATGTGATTTTTCGATGTCAATTTGGCGTCGATGGCTTTGAATGTCGCATCGGTGACTCCTTTCGCCAAATACTCCTTCGCTGGTACGATAAGATTGCCGTAGATCTTCAGAGCTTTTGCAGTCATCGCGAYGCCAACTCTCTGAAAATTGGAATTGGAAACTCCTTGAGCAAAGGCCATGAGCAACTTTGAGCTCAATTATCTCGATTCTCGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATATTGTTCTTGTTAAGAAAAATATTTTATAAGTTGACACATTTTTGATAACTTTTGAAGGGACCGAGATAAATTGACTCAAAGTTAAACGGTCGGAAGCTGCAGCTCAGGCGGCGAGCAACTTCGAGCCCTTATATCTCTTCTCCTGTGAAAGTTATCAAAAATTCGTCAACTGATAAAATGTTTCCCATGAGATGAGATGTTTTTTATCAGTTGACAAATTTTGGGTATCTCATCAAACAGCTTAGATAATTGGGCTCTAAGAAAAAGGTTTAGGTGGGCTCTTATTAAGGGTAGTTTCCAGACCGTCATCTTTGAGCTCAATTATCTTGACTCCTTTGAAAAATATCAAAAATCGGTCAACTGATAAAATATTGCTCATCTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>501 394 105</canonical_bands>
                <polymorphic_bands>606 394</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>499 245 154 102</canonical_bands>
                <polymorphic_bands>601 245 154</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCGCTGGTACGATAAGATT</pcr_primer_p1>
		<pcr_primer_p2>CCTAAAAACTACGAAAATTTGATT</pcr_primer_p2>
		<pcr_amplicon_size>658</pcr_amplicon_size>
		<canonical_amplicon>TTCGCTGGTACGATAAGATTGCCGTAGATCTTCAGAGCTTTTGCAGTCATCGCGACGCCAACTCTCTGAAAATTGGAAT</canonical_amplicon>
		<polymorphic_amplicon>TTCGCTGGTACGATAAGATTGCCGTAGATCTTCAGAGCTTTTGCAGTCATCGCGAYGCCAACTCTCTGAAAATTGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21002</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>440373</contig_pos>
        <strand>+</strand>
        <context>TGGAGTTTGG[A/G]CCGCTTTCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCACGTTGGAAGAGCTAGAAGCAGATGGTGTGGCTGGAGGTGGAGTTTGG</left_flank>
        <right_flank>CCGCTTTCAACTCCAAGACCGTTTGCTTGTATTTCTTCTCCATCTCTTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTAGTTTTAATTACTAAAAACTTTCATTGGAAACCAATTTTTAAAAAAAGAAATTCATTCAGTCTATAATCTTTTGAATTTGAGATTTTTTAGAAATCTATCTAATCAACACCACAATAAAATTTATTCTATCTTATAATTCACATAAATCGAGTTATACGAAATGTTCACAGCTTCCTGACATTCGTATCCGATGGTTGAGTCCCGAGAGACTCGGCCACTGTCATTCCGGCCTCCGCGGCCGCTGCCTTCTTCTTCTTCCCGGCCTTCTTCTTCTTCTCCTTGGTATCTGGTGTCTTGGATCGTTTGCTCTTCTGTTGACTGATCGGTGCTTCAAGACTCAATCTCGACGGTCCGGCAACATTGGTATCAGACGTAGCCGTTCGCATTCCACCCACTTCCTGCTCGAGCTTCTGGATGTCCATTTCGTTGTTATCTCTTAGAGACATCACGTTGGAAGAGCTAGAAGCAGATGGTGTGGCTGGAGGTGGAGTTTGGGCCGCTTTCAACTCCAAGACCGTTTGCTTGTATTTCTTCTCCATCTCTTCTGCCTTCTGCTTATCCGTCATGTGATTTTTCGATGTCAATTTGGCGTCGATGGCTTTGAATGTCGCATCGGTGACTCCTTTCGCCAAATACTCCTTCGCTGGTACGATAAGATTGCCGTAGATCTTCAGAGCTTTTGCAGTCATCGCGACGCCAACTCTCTGAAAATTGGAATTGGAAACTCCTTGAGCAAAGGCCATGAGCAACTTTGAGCTCAATTATCTCGATTCTCGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATATTGTTCTTGTTAAGAAAAATATTTTATAAGTTGACACATTTTTGATAACTTTTGAAGGGACCGAGATAAATTGACTCAAAGTTAAACGGTCGGAAGCTGCAGCTCAGGCGGCGAGCAACTTCGAGCCCTTATATCTCTTCTCCTGTGAAAGTTATCAAAAATTCGTCAACTGATAAAATGTTTCC</canonical>
            <polymorphic>GGTAGTTTTAATTACTAAAAACTTTCATTGGAAACCAATTTTTAAAAAAAGAAATTCATTCAGTCTATAATCTTTTGAATTTGAGATTTTTTAGAAATCTATCTAATCAACACCACAATAAAATTTATTCTATCTTATAATTCACATAAATCGAGTTATACGAAATGTTCACAGCTTCCTGACATTCGTATCCGATGGTTGAGTCCCGAGAGACTCGGCCACTGTCATTCCGGCCTCCGCGGCCGCTGCCTTCTTCTTCTTCCCGGCCTTCTTCTTCTTCTCCTTGGTATCTGGTGTCTTGGATCGTTTGCTCTTCTGTTGACTGATCGGTGCTTCAAGACTCAATCTCGACGGTCCGGCAACATTGGTATCAGACGTAGCCGTTCGCATTCCACCCACTTCCTGCTCGAGCTTCTGGATGTCCATTTCGTTGTTATCTCTTAGAGACATCACGTTGGAAGAGCTAGAAGCAGATGGTGTGGCTGGAGGTGGAGTTTGGRCCGCTTTCAACTCCAAGACCGTTTGCTTGTATTTCTTCTCCATCTCTTCTGCCTTCTGCTTATCCGTCATGTGATTTTTCGATGTCAATTTGGCGTCGATGGCTTTGAATGTCGCATCGGTGACTCCTTTCGCCAAATACTCCTTCGCTGGTACGATAAGATTGCCGTAGATCTTCAGAGCTTTTGCAGTCATCGCGACGCCAACTCTCTGAAAATTGGAATTGGAAACTCCTTGAGCAAAGGCCATGAGCAACTTTGAGCTCAATTATCTCGATTCTCGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATATTGTTCTTGTTAAGAAAAATATTTTATAAGTTGACACATTTTTGATAACTTTTGAAGGGACCGAGATAAATTGACTCAAAGTTAAACGGTCGGAAGCTGCAGCTCAGGCGGCGAGCAACTTCGAGCCCTTATATCTCTTCTCCTGTGAAAGTTATCAAAAATTCGTCAACTGATAAAATGTTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>257 243 234 218 24 15 9</canonical_bands>
                <polymorphic_bands>477 257 218 24 15 9</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>411 255 242 74 12 6</canonical_bands>
                <polymorphic_bands>666 242 74 12 6</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>174 151 114 102 78 63 60 52 44 31 24 23 19 18 17 15 9 6</canonical_bands>
                <polymorphic_bands>174 151 120 114 78 63 60 52 44 31 24 23 19 17 15 9 6</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>423 261 242 74</canonical_bands>
                <polymorphic_bands>684 242 74</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCCATTTCGTTGTTATCTCTTA</pcr_primer_p1>
		<pcr_primer_p2>TACGGCAATCTTATCGTACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCCATTTCGTTGTTATCTCTTAGAGACATCACGTTGGAAGAGCTAGAAGCAGATGGTGTGGCTGGAGGTGGAGTTTGGGCCGCTTTCAACTCCAAGACCGTTTGCTTGTATTTCTTCTCCATCTCTTCTGCCTTCTGCTTATCCGTCATGTGATTTTTCGATGTCAATTTGGCGTCGATGGCTTTGAATGTCGCATCGGTGACTCCTTTCGCCAAATACTCCTTCGCTGGTACGATAAGATTGCCGTA</canonical_amplicon>
		<polymorphic_amplicon>GTCCATTTCGTTGTTATCTCTTAGAGACATCACGTTGGAAGAGCTAGAAGCAGATGGTGTGGCTGGAGGTGGAGTTTGGRCCGCTTTCAACTCCAAGACCGTTTGCTTGTATTTCTTCTCCATCTCTTCTGCCTTCTGCTTATCCGTCATGTGATTTTTCGATGTCAATTTGGCGTCGATGGCTTTGAATGTCGCATCGGTGACTCCTTTCGCCAAATACTCCTTCGCTGGTACGATAAGATTGCCGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21003</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>440320</contig_pos>
        <strand>+</strand>
        <context>TCTCTTAGAG[A/G]CATCACGTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACTTCCTGCTCGAGCTTCTGGATGTCCATTTCGTTGTTATCTCTTAGAG</left_flank>
        <right_flank>CATCACGTTGGAAGAGCTAGAAGCAGATGGTGTGGCTGGAGGTGGAGTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGTCTGATAGCAATAATTTCATGTACCTAAAATAACTGTAGCTTGAGATACGGTAGTTTTAATTACTAAAAACTTTCATTGGAAACCAATTTTTAAAAAAAGAAATTCATTCAGTCTATAATCTTTTGAATTTGAGATTTTTTAGAAATCTATCTAATCAACACCACAATAAAATTTATTCTATCTTATAATTCACATAAATCGAGTTATACGAAATGTTCACAGCTTCCTGACATTCGTATCCGATGGTTGAGTCCCGAGAGACTCGGCCACTGTCATTCCGGCCTCCGCGGCCGCTGCCTTCTTCTTCTTCCCGGCCTTCTTCTTCTTCTCCTTGGTATCTGGTGTCTTGGATCGTTTGCTCTTCTGTTGACTGATCGGTGCTTCAAGACTCAATCTCGACGGTCCGGCAACATTGGTATCAGACGTAGCCGTTCGCATTCCACCCACTTCCTGCTCGAGCTTCTGGATGTCCATTTCGTTGTTATCTCTTAGAGACATCACGTTGGAAGAGCTAGAAGCAGATGGTGTGGCTGGAGGTGGAGTTTGGGCCGCTTTCAACTCCAAGACCGTTTGCTTGTATTTCTTCTCCATCTCTTCTGCCTTCTGCTTATCCGTCATGTGATTTTTCGATGTCAATTTGGCGTCGATGGCTTTGAATGTCGCATCGGTGACTCCTTTCGCCAAATACTCCTTCGCTGGTACGATAAGATTGCCGTAGATCTTCAGAGCTTTTGCAGTCATCGCGACGCCAACTCTCTGAAAATTGGAATTGGAAACTCCTTGAGCAAAGGCCATGAGCAACTTTGAGCTCAATTATCTCGATTCTCGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATATTGTTCTTGTTAAGAAAAATATTTTATAAGTTGACACATTTTTGATAACTTTTGAAGGGACCGAGATAAATTGACTCAAAGTTAAACGGTCGGAAGCTGCAGCTCAGGCGGCGAGCAACTTCGAGCCCTTAT</canonical>
            <polymorphic>CAAGTCTGATAGCAATAATTTCATGTACCTAAAATAACTGTAGCTTGAGATACGGTAGTTTTAATTACTAAAAACTTTCATTGGAAACCAATTTTTAAAAAAAGAAATTCATTCAGTCTATAATCTTTTGAATTTGAGATTTTTTAGAAATCTATCTAATCAACACCACAATAAAATTTATTCTATCTTATAATTCACATAAATCGAGTTATACGAAATGTTCACAGCTTCCTGACATTCGTATCCGATGGTTGAGTCCCGAGAGACTCGGCCACTGTCATTCCGGCCTCCGCGGCCGCTGCCTTCTTCTTCTTCCCGGCCTTCTTCTTCTTCTCCTTGGTATCTGGTGTCTTGGATCGTTTGCTCTTCTGTTGACTGATCGGTGCTTCAAGACTCAATCTCGACGGTCCGGCAACATTGGTATCAGACGTAGCCGTTCGCATTCCACCCACTTCCTGCTCGAGCTTCTGGATGTCCATTTCGTTGTTATCTCTTAGAGRCATCACGTTGGAAGAGCTAGAAGCAGATGGTGTGGCTGGAGGTGGAGTTTGGGCCGCTTTCAACTCCAAGACCGTTTGCTTGTATTTCTTCTCCATCTCTTCTGCCTTCTGCTTATCCGTCATGTGATTTTTCGATGTCAATTTGGCGTCGATGGCTTTGAATGTCGCATCGGTGACTCCTTTCGCCAAATACTCCTTCGCTGGTACGATAAGATTGCCGTAGATCTTCAGAGCTTTTGCAGTCATCGCGACGCCAACTCTCTGAAAATTGGAATTGGAAACTCCTTGAGCAAAGGCCATGAGCAACTTTGAGCTCAATTATCTCGATTCTCGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATATTGTTCTTGTTAAGAAAAATATTTTATAAGTTGACACATTTTTGATAACTTTTGAAGGGACCGAGATAAATTGACTCAAAGTTAAACGGTCGGAAGCTGCAGCTCAGGCGGCGAGCAACTTCGAGCCCTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTGCTCTTCTGTTGACTGAT</pcr_primer_p1>
		<pcr_primer_p2>GAAGAGATGGAGAAGAAATACAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GTTTGCTCTTCTGTTGACTGATCGGTGCTTCAAGACTCAATCTCGACGGTCCGGCAACATTGGTATCAGACGTAGCCGTTCGCATTCCACCCACTTCCTGCTCGAGCTTCTGGATGTCCATTTCGTTGTTATCTCTTAGAGACATCACGTTGGAAGAGCTAGAAGCAGATGGTGTGGCTGGAGGTGGAGTTTGGGCCGCTTTCAACTCCAAGACCGTTTGCTTGTATTTCTTCTCCATCTCTTC</canonical_amplicon>
		<polymorphic_amplicon>GTTTGCTCTTCTGTTGACTGATCGGTGCTTCAAGACTCAATCTCGACGGTCCGGCAACATTGGTATCAGACGTAGCCGTTCGCATTCCACCCACTTCCTGCTCGAGCTTCTGGATGTCCATTTCGTTGTTATCTCTTAGAGRCATCACGTTGGAAGAGCTAGAAGCAGATGGTGTGGCTGGAGGTGGAGTTTGGGCCGCTTTCAACTCCAAGACCGTTTGCTTGTATTTCTTCTCCATCTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21004</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>440286</contig_pos>
        <strand>+</strand>
        <context>CTGCTCGAGC[A/T]TCTGGATGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATTGGTATCAGACGTAGCCGTTCGCATTCCACCCACTTCCTGCTCGAGC</left_flank>
        <right_flank>TCTGGATGTCCATTTCGTTGTTATCTCTTAGAGACATCACGTTGGAAGAG</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGAATATACTCATTTGAAAACTCTAGACAAGCCAAGTCTGATAGCAATAATTTCATGTACCTAAAATAACTGTAGCTTGAGATACGGTAGTTTTAATTACTAAAAACTTTCATTGGAAACCAATTTTTAAAAAAAGAAATTCATTCAGTCTATAATCTTTTGAATTTGAGATTTTTTAGAAATCTATCTAATCAACACCACAATAAAATTTATTCTATCTTATAATTCACATAAATCGAGTTATACGAAATGTTCACAGCTTCCTGACATTCGTATCCGATGGTTGAGTCCCGAGAGACTCGGCCACTGTCATTCCGGCCTCCGCGGCCGCTGCCTTCTTCTTCTTCCCGGCCTTCTTCTTCTTCTCCTTGGTATCTGGTGTCTTGGATCGTTTGCTCTTCTGTTGACTGATCGGTGCTTCAAGACTCAATCTCGACGGTCCGGCAACATTGGTATCAGACGTAGCCGTTCGCATTCCACCCACTTCCTGCTCGAGCTTCTGGATGTCCATTTCGTTGTTATCTCTTAGAGACATCACGTTGGAAGAGCTAGAAGCAGATGGTGTGGCTGGAGGTGGAGTTTGGGCCGCTTTCAACTCCAAGACCGTTTGCTTGTATTTCTTCTCCATCTCTTCTGCCTTCTGCTTATCCGTCATGTGATTTTTCGATGTCAATTTGGCGTCGATGGCTTTGAATGTCGCATCGGTGACTCCTTTCGCCAAATACTCCTTCGCTGGTACGATAAGATTGCCGTAGATCTTCAGAGCTTTTGCAGTCATCGCGACGCCAACTCTCTGAAAATTGGAATTGGAAACTCCTTGAGCAAAGGCCATGAGCAACTTTGAGCTCAATTATCTCGATTCTCGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATATTGTTCTTGTTAAGAAAAATATTTTATAAGTTGACACATTTTTGATAACTTTTGAAGGGACCGAGATAAATTGACTCAAAGTTAAACGGTCGGAAGCT</canonical>
            <polymorphic>CATGAATATACTCATTTGAAAACTCTAGACAAGCCAAGTCTGATAGCAATAATTTCATGTACCTAAAATAACTGTAGCTTGAGATACGGTAGTTTTAATTACTAAAAACTTTCATTGGAAACCAATTTTTAAAAAAAGAAATTCATTCAGTCTATAATCTTTTGAATTTGAGATTTTTTAGAAATCTATCTAATCAACACCACAATAAAATTTATTCTATCTTATAATTCACATAAATCGAGTTATACGAAATGTTCACAGCTTCCTGACATTCGTATCCGATGGTTGAGTCCCGAGAGACTCGGCCACTGTCATTCCGGCCTCCGCGGCCGCTGCCTTCTTCTTCTTCCCGGCCTTCTTCTTCTTCTCCTTGGTATCTGGTGTCTTGGATCGTTTGCTCTTCTGTTGACTGATCGGTGCTTCAAGACTCAATCTCGACGGTCCGGCAACATTGGTATCAGACGTAGCCGTTCGCATTCCACCCACTTCCTGCTCGAGCWTCTGGATGTCCATTTCGTTGTTATCTCTTAGAGACATCACGTTGGAAGAGCTAGAAGCAGATGGTGTGGCTGGAGGTGGAGTTTGGGCCGCTTTCAACTCCAAGACCGTTTGCTTGTATTTCTTCTCCATCTCTTCTGCCTTCTGCTTATCCGTCATGTGATTTTTCGATGTCAATTTGGCGTCGATGGCTTTGAATGTCGCATCGGTGACTCCTTTCGCCAAATACTCCTTCGCTGGTACGATAAGATTGCCGTAGATCTTCAGAGCTTTTGCAGTCATCGCGACGCCAACTCTCTGAAAATTGGAATTGGAAACTCCTTGAGCAAAGGCCATGAGCAACTTTGAGCTCAATTATCTCGATTCTCGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATATTGTTCTTGTTAAGAAAAATATTTTATAAGTTGACACATTTTTGATAACTTTTGAAGGGACCGAGATAAATTGACTCAAAGTTAAACGGTCGGAAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>237 217 184 151 80 77 52 2</canonical_bands>
                <polymorphic_bands>289 217 184 151 80 77 2</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>184 151 114 102 78 63 52 44 44 33 31 24 19 18 17 15 9 2</canonical_bands>
                <polymorphic_bands>184 151 114 102 83 78 63 44 44 33 24 19 18 17 15 9 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTGCTCTTCTGTTGACTGAT</pcr_primer_p1>
		<pcr_primer_p2>GAAGAGATGGAGAAGAAATACAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GTTTGCTCTTCTGTTGACTGATCGGTGCTTCAAGACTCAATCTCGACGGTCCGGCAACATTGGTATCAGACGTAGCCGTTCGCATTCCACCCACTTCCTGCTCGAGCTTCTGGATGTCCATTTCGTTGTTATCTCTTAGAGACATCACGTTGGAAGAGCTAGAAGCAGATGGTGTGGCTGGAGGTGGAGTTTGGGCCGCTTTCAACTCCAAGACCGTTTGCTTGTATTTCTTCTCCATCTCTTC</canonical_amplicon>
		<polymorphic_amplicon>GTTTGCTCTTCTGTTGACTGATCGGTGCTTCAAGACTCAATCTCGACGGTCCGGCAACATTGGTATCAGACGTAGCCGTTCGCATTCCACCCACTTCCTGCTCGAGCWTCTGGATGTCCATTTCGTTGTTATCTCTTAGAGACATCACGTTGGAAGAGCTAGAAGCAGATGGTGTGGCTGGAGGTGGAGTTTGGGCCGCTTTCAACTCCAAGACCGTTTGCTTGTATTTCTTCTCCATCTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21005</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>440269</contig_pos>
        <strand>+</strand>
        <context>CGCATTSCAC[C/T]CACTTCCTGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCGACGGTCCGGCAACATTGGTATCAGACGTAGCCGTTCGCATTCCAC</left_flank>
        <right_flank>CACTTCCTGCTCGAGCTTCTGGATGTCCATTTCGTTGTTATCTCTTAGAG</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCTTCAAAACTAGACATGAATATACTCATTTGAAAACTCTAGACAAGCCAAGTCTGATAGCAATAATTTCATGTACCTAAAATAACTGTAGCTTGAGATACGGTAGTTTTAATTACTAAAAACTTTCATTGGAAACCAATTTTTAAAAAAAGAAATTCATTCAGTCTATAATCTTTTGAATTTGAGATTTTTTAGAAATCTATCTAATCAACACCACAATAAAATTTATTCTATCTTATAATTCACATAAATCGAGTTATACGAAATGTTCACAGCTTCCTGACATTCGTATCCGATGGTTGAGTCCCGAGAGACTCGGCCACTGTCATTCCGGCCTCCGCGGCCGCTGCCTTCTTCTTCTTCCCGGCCTTCTTCTTCTTCTCCTTGGTATCTGGTGTCTTGGATCGTTTGCTCTTCTGTTGACTGATCGGTGCTTCAAGACTCAATCTCGACGGTCCGGCAACATTGGTATCAGACGTAGCCGTTCGCATTCCACCCACTTCCTGCTCGAGCTTCTGGATGTCCATTTCGTTGTTATCTCTTAGAGACATCACGTTGGAAGAGCTAGAAGCAGATGGTGTGGCTGGAGGTGGAGTTTGGGCCGCTTTCAACTCCAAGACCGTTTGCTTGTATTTCTTCTCCATCTCTTCTGCCTTCTGCTTATCCGTCATGTGATTTTTCGATGTCAATTTGGCGTCGATGGCTTTGAATGTCGCATCGGTGACTCCTTTCGCCAAATACTCCTTCGCTGGTACGATAAGATTGCCGTAGATCTTCAGAGCTTTTGCAGTCATCGCGACGCCAACTCTCTGAAAATTGGAATTGGAAACTCCTTGAGCAAAGGCCATGAGCAACTTTGAGCTCAATTATCTCGATTCTCGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATATTGTTCTTGTTAAGAAAAATATTTTATAAGTTGACACATTTTTGATAACTTTTGAAGGGACCGAGATAAATTGACTCAAAG</canonical>
            <polymorphic>ATTTCTTCAAAACTAGACATGAATATACTCATTTGAAAACTCTAGACAAGCCAAGTCTGATAGCAATAATTTCATGTACCTAAAATAACTGTAGCTTGAGATACGGTAGTTTTAATTACTAAAAACTTTCATTGGAAACCAATTTTTAAAAAAAGAAATTCATTCAGTCTATAATCTTTTGAATTTGAGATTTTTTAGAAATCTATCTAATCAACACCACAATAAAATTTATTCTATCTTATAATTCACATAAATCGAGTTATACGAAATGTTCACAGCTTCCTGACATTCGTATCCGATGGTTGAGTCCCGAGAGACTCGGCCACTGTCATTCCGGCCTCCGCGGCCGCTGCCTTCTTCTTCTTCCCGGCCTTCTTCTTCTTCTCCTTGGTATCTGGTGTCTTGGATCGTTTGCTCTTCTGTTGACTGATCGGTGCTTCAAGACTCAATCTCGACGGTCCGGCAACATTGGTATCAGACGTAGCCGTTCGCATTCCACYCACTTCCTGCTCGAGCTTCTGGATGTCCATTTCGTTGTTATCTCTTAGAGACATCACGTTGGAAGAGCTAGAAGCAGATGGTGTGGCTGGAGGTGGAGTTTGGGCCGCTTTCAACTCCAAGACCGTTTGCTTGTATTTCTTCTCCATCTCTTCTGCCTTCTGCTTATCCGTCATGTGATTTTTCGATGTCAATTTGGCGTCGATGGCTTTGAATGTCGCATCGGTGACTCCTTTCGCCAAATACTCCTTCGCTGGTACGATAAGATTGCCGTAGATCTTCAGAGCTTTTGCAGTCATCGCGACGCCAACTCTCTGAAAATTGGAATTGGAAACTCCTTGAGCAAAGGCCATGAGCAACTTTGAGCTCAATTATCTCGATTCTCGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATATTGTTCTTGTTAAGAAAAATATTTTATAAGTTGACACATTTTTGATAACTTTTGAAGGGACCGAGATAAATTGACTCAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTGCTCTTCTGTTGACTGAT</pcr_primer_p1>
		<pcr_primer_p2>GAAGAGATGGAGAAGAAATACAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GTTTGCTCTTCTGTTGACTGATCGGTGCTTCAAGACTCAATCTCGACGGTCCGGCAACATTGGTATCAGACGTAGCCGTTCGCATTCCACCCACTTCCTGCTCGAGCTTCTGGATGTCCATTTCGTTGTTATCTCTTAGAGACATCACGTTGGAAGAGCTAGAAGCAGATGGTGTGGCTGGAGGTGGAGTTTGGGCCGCTTTCAACTCCAAGACCGTTTGCTTGTATTTCTTCTCCATCTCTTC</canonical_amplicon>
		<polymorphic_amplicon>GTTTGCTCTTCTGTTGACTGATCGGTGCTTCAAGACTCAATCTCGACGGTCCGGCAACATTGGTATCAGACGTAGCCGTTCGCATTCCACYCACTTCCTGCTCGAGCTTCTGGATGTCCATTTCGTTGTTATCTCTTAGAGACATCACGTTGGAAGAGCTAGAAGCAGATGGTGTGGCTGGAGGTGGAGTTTGGGCCGCTTTCAACTCCAAGACCGTTTGCTTGTATTTCTTCTCCATCTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21006</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>495273</contig_pos>
        <strand>+</strand>
        <context>TCTTCCTCTT[A/T]TTTCCATTCM</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTCTTTCTTCGTCTCCTTAACTTTCTGCCCTAAACTCTTCTTCCTCTT</left_flank>
        <right_flank>TTTCCATTCCCATATTCAATTTGCGGGACCGCCGCACTTTTGGTCAGTCC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTAGGAATCGGGATACCGATGAGAAGATTGCTCCGACTTTCCTCCGTTGGCTTTACTGACTTCAGCATTCTAGGAATTCCATTTAGACATACCTGTGTTTCAGCTGAGAAGGTTTAGGTGGTTCGAAAGTTCAACACCTTATTTTATGATCACTCAAAATTCTATTCTCGTACAATTTTTATCCCAGCTACTTCTTTGTATTTCGTTTTTTCCTCTCTTATTCTCCTCCAAAATCATATTTGTCGACGTGCCTTCCATACTTGAGAAAGCCTTCTTCCAAGCAACTGGCTCGTCATATTTTTTTTCTCCTCCGCTCTCAACACATCTTCAATCTTCATATATTCCGTTTTTCAAAACGTCTCTAGGGAGCGTCGCTCATCGGTCTCCCAACCAACCAATTTCCAGTTTTGTTCGGGAGCTCACGCCCCCCCCCCCGAAACTTCTTCTATTTCTTTCTTCGTCTCCTTAACTTTCTGCCCTAAACTCTTCTTCCTCTTTTTTCCATTCCCATATTCAATTTGCGGGACCGCCGCACTTTTGGTCAGTCCACTTTATCCTAAAGAGTCTCTTTTTACTACCTGTTGCATTCTATGCATACTTTCATTTGTTTTATATTTGATCTACCAAGTTATTTGTGATCCACCTAAGAAGTGGCCCACCTAAGAAGAGCGCCCTTCTCTGGCACTCTTCTTATTAGTTGTTTCATTGGTCATAATTCTTCATTTGACTGACAACCATTCTCAGTCTGTCCTAGTCTCTCCCCAACCTTCTCTACATATCCCCCATCTATTCTTGTACACTTTTAGTACCTGAATAAATCTGTATTCTATAACTACTATTCGTGTTCCTTGAACCGGCCAGAATGCCGGATCCTAAGGACTCAACACTACCTACATTTTTTCCAGATCTTATTCTTACATTTAGTATGACATCTTGCTTTTGCCGCATGAGTTATTCATTTATTCTTTCATTTCCTTTCTTTCATCTTTTGCCCTATT</canonical>
            <polymorphic>AATTAGGAATCGGGATACCGATGAGAAGATTGCTCCGACTTTCCTCCGTTGGCTTTACTGACTTCAGCATTCTAGGAATTCCATTTAGACATACCTGTGTTTCAGCTGAGAAGGTTTAGGTGGTTCGAAAGTTCAACACCTTATTTTATGATCACTCAAAATTCTATTCTCGTACAATTTTTATCCCAGCTACTTCTTTGTATTTCGTTTTTTCCTCTCTTATTCTCCTCCAAAATCATATTTGTCGACGTGCCTTCCATACTTGAGAAAGCCTTCTTCCAAGCAACTGGCTCGTCATATTTTTTTTCTCCTCCGCTCTCAACACATCTTCAATCTTCATATATTCCGTTTTTCAAAACGTCTCTAGGGAGCGTCGCTCATCGGTCTCCCAACCAACCAATTTCCAGTTTTGTTCGGGAGCTCACGCCCCCCCCCCCGAAACTTCTTCTATTTCTTTCTTCGTCTCCTTAACTTTCTGCCCTAAACTCTTCTTCCTCTTWTTTCCATTCCCATATTCAATTTGCGGGACCGCCGCACTTTTGGTCAGTCCACTTTATCCTAAAGAGTCTCTTTTTACTACCTGTTGCATTCTATGCATACTTTCATTTGTTTTATATTTGATCTACCAAGTTATTTGTGATCCACCTAAGAAGTGGCCCACCTAAGAAGAGCGCCCTTCTCTGGCACTCTTCTTATTAGTTGTTTCATTGGTCATAATTCTTCATTTGACTGACAACCATTCTCAGTCTGTCCTAGTCTCTCCCCAACCTTCTCTACATATCCCCCATCTATTCTTGTACACTTTTAGTACCTGAATAAATCTGTATTCTATAACTACTATTCGTGTTCCTTGAACCGGCCAGAATGCCGGATCCTAAGGACTCAACACTACCTACATTTTTTCCAGATCTTATTCTTACATTTAGTATGACATCTTGCTTTTGCCGCATGAGTTATTCATTTATTCTTTCATTTCCTTTCTTTCATCTTTTGCCCTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTCAACACATCTTCAATCTTC</pcr_primer_p1>
		<pcr_primer_p2>TCTTTAGGATAAAGTGGACTGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTCAACACATCTTCAATCTTCATATATTCCGTTTTTCAAAACGTCTCTAGGGAGCGTCGCTCATCGGTCTCCCAACCAACCAATTTCCAGTTTTGTTCGGGAGCTCACGCCCCCCCCCCCGAAACTTCTTCTATTTCTTTCTTCGTCTCCTTAACTTTCTGCCCTAAACTCTTCTTCCTCTTTTTTCCATTCCCATATTCAATTTGCGGGACCGCCGCACTTTTGGTCAGTCCACTTTATCCTAAAGA</canonical_amplicon>
		<polymorphic_amplicon>CTCTCAACACATCTTCAATCTTCATATATTCCGTTTTTCAAAACGTCTCTAGGGAGCGTCGCTCATCGGTCTCCCAACCAACCAATTTCCAGTTTTGTTCGGGAGCTCACGCCCCCCCCCCCGAAACTTCTTCTATTTCTTTCTTCGTCTCCTTAACTTTCTGCCCTAAACTCTTCTTCCTCTTWTTTCCATTCCCATATTCAATTTGCGGGACCGCCGCACTTTTGGTCAGTCCACTTTATCCTAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21007</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>495283</contig_pos>
        <strand>+</strand>
        <context>WTTTCCATTC[A/C]CATATTCAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCGTCTCCTTAACTTTCTGCCCTAAACTCTTCTTCCTCTTTTTTCCATTC</left_flank>
        <right_flank>CATATTCAATTTGCGGGACCGCCGCACTTTTGGTCAGTCCACTTTATCCT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGGATACCGATGAGAAGATTGCTCCGACTTTCCTCCGTTGGCTTTACTGACTTCAGCATTCTAGGAATTCCATTTAGACATACCTGTGTTTCAGCTGAGAAGGTTTAGGTGGTTCGAAAGTTCAACACCTTATTTTATGATCACTCAAAATTCTATTCTCGTACAATTTTTATCCCAGCTACTTCTTTGTATTTCGTTTTTTCCTCTCTTATTCTCCTCCAAAATCATATTTGTCGACGTGCCTTCCATACTTGAGAAAGCCTTCTTCCAAGCAACTGGCTCGTCATATTTTTTTTCTCCTCCGCTCTCAACACATCTTCAATCTTCATATATTCCGTTTTTCAAAACGTCTCTAGGGAGCGTCGCTCATCGGTCTCCCAACCAACCAATTTCCAGTTTTGTTCGGGAGCTCACGCCCCCCCCCCCGAAACTTCTTCTATTTCTTTCTTCGTCTCCTTAACTTTCTGCCCTAAACTCTTCTTCCTCTTTTTTCCATTCCCATATTCAATTTGCGGGACCGCCGCACTTTTGGTCAGTCCACTTTATCCTAAAGAGTCTCTTTTTACTACCTGTTGCATTCTATGCATACTTTCATTTGTTTTATATTTGATCTACCAAGTTATTTGTGATCCACCTAAGAAGTGGCCCACCTAAGAAGAGCGCCCTTCTCTGGCACTCTTCTTATTAGTTGTTTCATTGGTCATAATTCTTCATTTGACTGACAACCATTCTCAGTCTGTCCTAGTCTCTCCCCAACCTTCTCTACATATCCCCCATCTATTCTTGTACACTTTTAGTACCTGAATAAATCTGTATTCTATAACTACTATTCGTGTTCCTTGAACCGGCCAGAATGCCGGATCCTAAGGACTCAACACTACCTACATTTTTTCCAGATCTTATTCTTACATTTAGTATGACATCTTGCTTTTGCCGCATGAGTTATTCATTTATTCTTTCATTTCCTTTCTTTCATCTTTTGCCCTATTGTTCAGTTTC</canonical>
            <polymorphic>CGGGATACCGATGAGAAGATTGCTCCGACTTTCCTCCGTTGGCTTTACTGACTTCAGCATTCTAGGAATTCCATTTAGACATACCTGTGTTTCAGCTGAGAAGGTTTAGGTGGTTCGAAAGTTCAACACCTTATTTTATGATCACTCAAAATTCTATTCTCGTACAATTTTTATCCCAGCTACTTCTTTGTATTTCGTTTTTTCCTCTCTTATTCTCCTCCAAAATCATATTTGTCGACGTGCCTTCCATACTTGAGAAAGCCTTCTTCCAAGCAACTGGCTCGTCATATTTTTTTTCTCCTCCGCTCTCAACACATCTTCAATCTTCATATATTCCGTTTTTCAAAACGTCTCTAGGGAGCGTCGCTCATCGGTCTCCCAACCAACCAATTTCCAGTTTTGTTCGGGAGCTCACGCCCCCCCCCCCGAAACTTCTTCTATTTCTTTCTTCGTCTCCTTAACTTTCTGCCCTAAACTCTTCTTCCTCTTTTTTCCATTCMCATATTCAATTTGCGGGACCGCCGCACTTTTGGTCAGTCCACTTTATCCTAAAGAGTCTCTTTTTACTACCTGTTGCATTCTATGCATACTTTCATTTGTTTTATATTTGATCTACCAAGTTATTTGTGATCCACCTAAGAAGTGGCCCACCTAAGAAGAGCGCCCTTCTCTGGCACTCTTCTTATTAGTTGTTTCATTGGTCATAATTCTTCATTTGACTGACAACCATTCTCAGTCTGTCCTAGTCTCTCCCCAACCTTCTCTACATATCCCCCATCTATTCTTGTACACTTTTAGTACCTGAATAAATCTGTATTCTATAACTACTATTCGTGTTCCTTGAACCGGCCAGAATGCCGGATCCTAAGGACTCAACACTACCTACATTTTTTCCAGATCTTATTCTTACATTTAGTATGACATCTTGCTTTTGCCGCATGAGTTATTCATTTATTCTTTCATTTCCTTTCTTTCATCTTTTGCCCTATTGTTCAGTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTCAACACATCTTCAATCTTC</pcr_primer_p1>
		<pcr_primer_p2>TCTTTAGGATAAAGTGGACTGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTCAACACATCTTCAATCTTCATATATTCCGTTTTTCAAAACGTCTCTAGGGAGCGTCGCTCATCGGTCTCCCAACCAACCAATTTCCAGTTTTGTTCGGGAGCTCACGCCCCCCCCCCCGAAACTTCTTCTATTTCTTTCTTCGTCTCCTTAACTTTCTGCCCTAAACTCTTCTTCCTCTTTTTTCCATTCCCATATTCAATTTGCGGGACCGCCGCACTTTTGGTCAGTCCACTTTATCCTAAAGA</canonical_amplicon>
		<polymorphic_amplicon>CTCTCAACACATCTTCAATCTTCATATATTCCGTTTTTCAAAACGTCTCTAGGGAGCGTCGCTCATCGGTCTCCCAACCAACCAATTTCCAGTTTTGTTCGGGAGCTCACGCCCCCCCCCCCGAAACTTCTTCTATTTCTTTCTTCGTCTCCTTAACTTTCTGCCCTAAACTCTTCTTCCTCTTTTTTCCATTCMCATATTCAATTTGCGGGACCGCCGCACTTTTGGTCAGTCCACTTTATCCTAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21008</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>497433</contig_pos>
        <strand>+</strand>
        <context>ACTGTCAGGT[C/T]GAAATATCGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAAAAAAAACTTTTGGAAACTTGGAAATTTTGAATTTGACTGTCAGGT</left_flank>
        <right_flank>GAAATATCGAAATTCTGATGAACTGGAGAACTCAAATCATAAAAGTACAA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTTTCTTTTTAAGTGTTCACGATGCGTCCATTACCTACTCAACCTTTCTTTGTTTCAAATTTTCCTAACTGGTTTTTTTTTGCGTGCTCCAATTCCTCTCCCCAAAAATTCTTCCTAAACTCATTTCTTAGTTTTTTGCAGAGGTGAGGATATAATGCCTGTGCGGAAAAAGCATGGTCCGTACGATATCATCGCTGACGATGTGTACGACTGCCGAATTCCACTTCACAACGAACTCGCTTATCAGCATGGTATTCATTTCGAAGCAAAGGTATTTTTTTTTTTTGGAACCTTAAAAAAAAACTTTTCTGTTCTTCGACTTTCTTCAACTCTTTTTCCCAACAAACCATCAGTGTTTTCGTCTAAACGGGCGGGTTTGCCTGGAGGGCCAGATTAGATTGTCGACGAGAGTCGCCTAAACTTGTTTGCCCGAGTTAAATCAGCATAAGAAAAAAAAACTTTTGGAAACTTGGAAATTTTGAATTTGACTGTCAGGTCGAAATATCGAAATTCTGATGAACTGGAGAACTCAAATCATAAAAGTACAATTTTCTCTTCAAAACTAAAAAGTCGAAAAACCGAAAAGTTGAGGAAATGCTCTCTGATGTTCTAAAAAGAAAGAAAATGTATTTTGCAGTATGTCGGAAGCATGGAAATTCCTAGACCCGGGACGAGAATCGAAATTGTGGCGGCAATGCGGAGAGTTCGGGTAAGAACATTTTGGGGATAAAAAATTGAAAAACTCTTGATATGGCAATTTCATAAAGTAGAAGCGCTAAATCCATAAGCAGCGAACCGTGTTTCTCTAACAGGAGCCCATCCAAACCGTCAACTTTGAGCTGAATTATCTCGATTTTTGTGAAAGTTATCGAAACTTGCCAACTGATAAATTATGAATCAAAACATCACCTAAATTTAATCAGTTAACATTTTTTGATATCTTTCGCATGAATCAAGATAACTGAGCTCAAAGTTGAGTTAGGTGGGCCTCTATTAAA</canonical>
            <polymorphic>GGTTTTCTTTTTAAGTGTTCACGATGCGTCCATTACCTACTCAACCTTTCTTTGTTTCAAATTTTCCTAACTGGTTTTTTTTTGCGTGCTCCAATTCCTCTCCCCAAAAATTCTTCCTAAACTCATTTCTTAGTTTTTTGCAGAGGTGAGGATATAATGCCTGTGCGGAAAAAGCATGGTCCGTACGATATCATCGCTGACGATGTGTACGACTGCCGAATTCCACTTCACAACGAACTCGCTTATCAGCATGGTATTCATTTCGAAGCAAAGGTATTTTTTTTTTTTGGAACCTTAAAAAAAAACTTTTCTGTTCTTCGACTTTCTTCAACTCTTTTTCCCAACAAACCATCAGTGTTTTCGTCTAAACGGGCGGGTTTGCCTGGAGGGCCAGATTAGATTGTCGACGAGAGTCGCCTAAACTTGTTTGCCCGAGTTAAATCAGCATAAGAAAAAAAAACTTTTGGAAACTTGGAAATTTTGAATTTGACTGTCAGGTYGAAATATCGAAATTCTGATGAACTGGAGAACTCAAATCATAAAAGTACAATTTTCTCTTCAAAACTAAAAAGTCGAAAAACCGAAAAGTTGAGGAAATGCTCTCTGATGTTCTAAAAAGAAAGAAAATGTATTTTGCAGTATGTCGGAAGCATGGAAATTCCTAGACCCGGGACGAGAATCGAAATTGTGGCGGCAATGCGGAGAGTTCGGGTAAGAACATTTTGGGGATAAAAAATTGAAAAACTCTTGATATGGCAATTTCATAAAGTAGAAGCGCTAAATCCATAAGCAGCGAACCGTGTTTCTCTAACAGGAGCCCATCCAAACCGTCAACTTTGAGCTGAATTATCTCGATTTTTGTGAAAGTTATCGAAACTTGCCAACTGATAAATTATGAATCAAAACATCACCTAAATTTAATCAGTTAACATTTTTTGATATCTTTCGCATGAATCAAGATAACTGAGCTCAAAGTTGAGTTAGGTGGGCCTCTATTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNNNNGTC</site>
                <isoschizomers>
                    <enzyme>AasI</enzyme>
                    <enzyme>DrdI</enzyme>
                    <enzyme>DseDI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>264 172 128 107 95 86 66 55 19 8</canonical_bands>
                <polymorphic_bands>264 172 128 107 103 86 66 55 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACAAACCATCAGTGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCGACTTTTTAGTTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CAACAAACCATCAGTGTTTTCGTCTAAACGGGCGGGTTTGCCTGGAGGGCCAGATTAGATTGTCGACGAGAGTCGCCTAAACTTGTTTGCCCGAGTTAAATCAGCATAAGAAAAAAAAACTTTTGGAAACTTGGAAATTTTGAATTTGACTGTCAGGTCGAAATATCGAAATTCTGATGAACTGGAGAACTCAAATCATAAAAGTACAATTTTCTCTTCAAAACTAAAAAGTCGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CAACAAACCATCAGTGTTTTCGTCTAAACGGGCGGGTTTGCCTGGAGGGCCAGATTAGATTGTCGACGAGAGTCGCCTAAACTTGTTTGCCCGAGTTAAATCAGCATAAGAAAAAAAAACTTTTGGAAACTTGGAAATTTTGAATTTGACTGTCAGGTYGAAATATCGAAATTCTGATGAACTGGAGAACTCAAATCATAAAAGTACAATTTTCTCTTCAAAACTAAAAAGTCGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21009</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>497380</contig_pos>
        <strand>+</strand>
        <context>TTAAATCAGC[A/G]TAAGAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGATTGTCGACGAGAGTCGCCTAAACTTGTTTGCCCGAGTTAAATCAGC</left_flank>
        <right_flank>TAAGAAAAAAAAACTTTTGGAAACTTGGAAATTTTGAATTTGACTGTCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGAAACTATGATAGACATTTTGTTAGTGAGATATATGGACTCAAAGTGGACGGTTTTCTTTTTAAGTGTTCACGATGCGTCCATTACCTACTCAACCTTTCTTTGTTTCAAATTTTCCTAACTGGTTTTTTTTTGCGTGCTCCAATTCCTCTCCCCAAAAATTCTTCCTAAACTCATTTCTTAGTTTTTTGCAGAGGTGAGGATATAATGCCTGTGCGGAAAAAGCATGGTCCGTACGATATCATCGCTGACGATGTGTACGACTGCCGAATTCCACTTCACAACGAACTCGCTTATCAGCATGGTATTCATTTCGAAGCAAAGGTATTTTTTTTTTTTGGAACCTTAAAAAAAAACTTTTCTGTTCTTCGACTTTCTTCAACTCTTTTTCCCAACAAACCATCAGTGTTTTCGTCTAAACGGGCGGGTTTGCCTGGAGGGCCAGATTAGATTGTCGACGAGAGTCGCCTAAACTTGTTTGCCCGAGTTAAATCAGCATAAGAAAAAAAAACTTTTGGAAACTTGGAAATTTTGAATTTGACTGTCAGGTCGAAATATCGAAATTCTGATGAACTGGAGAACTCAAATCATAAAAGTACAATTTTCTCTTCAAAACTAAAAAGTCGAAAAACCGAAAAGTTGAGGAAATGCTCTCTGATGTTCTAAAAAGAAAGAAAATGTATTTTGCAGTATGTCGGAAGCATGGAAATTCCTAGACCCGGGACGAGAATCGAAATTGTGGCGGCAATGCGGAGAGTTCGGGTAAGAACATTTTGGGGATAAAAAATTGAAAAACTCTTGATATGGCAATTTCATAAAGTAGAAGCGCTAAATCCATAAGCAGCGAACCGTGTTTCTCTAACAGGAGCCCATCCAAACCGTCAACTTTGAGCTGAATTATCTCGATTTTTGTGAAAGTTATCGAAACTTGCCAACTGATAAATTATGAATCAAAACATCACCTAAATTTAATCAGTTAACATTTTTTGATATCTTTC</canonical>
            <polymorphic>TTGGAAACTATGATAGACATTTTGTTAGTGAGATATATGGACTCAAAGTGGACGGTTTTCTTTTTAAGTGTTCACGATGCGTCCATTACCTACTCAACCTTTCTTTGTTTCAAATTTTCCTAACTGGTTTTTTTTTGCGTGCTCCAATTCCTCTCCCCAAAAATTCTTCCTAAACTCATTTCTTAGTTTTTTGCAGAGGTGAGGATATAATGCCTGTGCGGAAAAAGCATGGTCCGTACGATATCATCGCTGACGATGTGTACGACTGCCGAATTCCACTTCACAACGAACTCGCTTATCAGCATGGTATTCATTTCGAAGCAAAGGTATTTTTTTTTTTTGGAACCTTAAAAAAAAACTTTTCTGTTCTTCGACTTTCTTCAACTCTTTTTCCCAACAAACCATCAGTGTTTTCGTCTAAACGGGCGGGTTTGCCTGGAGGGCCAGATTAGATTGTCGACGAGAGTCGCCTAAACTTGTTTGCCCGAGTTAAATCAGCRTAAGAAAAAAAAACTTTTGGAAACTTGGAAATTTTGAATTTGACTGTCAGGTCGAAATATCGAAATTCTGATGAACTGGAGAACTCAAATCATAAAAGTACAATTTTCTCTTCAAAACTAAAAAGTCGAAAAACCGAAAAGTTGAGGAAATGCTCTCTGATGTTCTAAAAAGAAAGAAAATGTATTTTGCAGTATGTCGGAAGCATGGAAATTCCTAGACCCGGGACGAGAATCGAAATTGTGGCGGCAATGCGGAGAGTTCGGGTAAGAACATTTTGGGGATAAAAAATTGAAAAACTCTTGATATGGCAATTTCATAAAGTAGAAGCGCTAAATCCATAAGCAGCGAACCGTGTTTCTCTAACAGGAGCCCATCCAAACCGTCAACTTTGAGCTGAATTATCTCGATTTTTGTGAAAGTTATCGAAACTTGCCAACTGATAAATTATGAATCAAAACATCACCTAAATTTAATCAGTTAACATTTTTTGATATCTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTTTTCTGTTCTTCGACTT</pcr_primer_p1>
		<pcr_primer_p2>TTATGATTTGAGTTCTCCAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>AAAACTTTTCTGTTCTTCGACTTTCTTCAACTCTTTTTCCCAACAAACCATCAGTGTTTTCGTCTAAACGGGCGGGTTTGCCTGGAGGGCCAGATTAGATTGTCGACGAGAGTCGCCTAAACTTGTTTGCCCGAGTTAAATCAGCATAAGAAAAAAAAACTTTTGGAAACTTGGAAATTTTGAATTTGACTGTCAGGTCGAAATATCGAAATTCTGATGAACTGGAGAACTCAAATCATAA</canonical_amplicon>
		<polymorphic_amplicon>AAAACTTTTCTGTTCTTCGACTTTCTTCAACTCTTTTTCCCAACAAACCATCAGTGTTTTCGTCTAAACGGGCGGGTTTGCCTGGAGGGCCAGATTAGATTGTCGACGAGAGTCGCCTAAACTTGTTTGCCCGAGTTAAATCAGCRTAAGAAAAAAAAACTTTTGGAAACTTGGAAATTTTGAATTTGACTGTCAGGTCGAAATATCGAAATTCTGATGAACTGGAGAACTCAAATCATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21010</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>497344</contig_pos>
        <strand>+</strand>
        <context>TTGTCGACGA[A/G]AGTCGCCTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGTCTAAACGGGCGGGTTTGCCTGGAGGGCCAGATTAGATTGTCGACGA</left_flank>
        <right_flank>AGTCGCCTAAACTTGTTTGCCCGAGTTAAATCAGCATAAGAAAAAAAAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAGATATCAACAAGTGGTCAACTGATAAAAGGTTTTGGAAACTATGATAGACATTTTGTTAGTGAGATATATGGACTCAAAGTGGACGGTTTTCTTTTTAAGTGTTCACGATGCGTCCATTACCTACTCAACCTTTCTTTGTTTCAAATTTTCCTAACTGGTTTTTTTTTGCGTGCTCCAATTCCTCTCCCCAAAAATTCTTCCTAAACTCATTTCTTAGTTTTTTGCAGAGGTGAGGATATAATGCCTGTGCGGAAAAAGCATGGTCCGTACGATATCATCGCTGACGATGTGTACGACTGCCGAATTCCACTTCACAACGAACTCGCTTATCAGCATGGTATTCATTTCGAAGCAAAGGTATTTTTTTTTTTTGGAACCTTAAAAAAAAACTTTTCTGTTCTTCGACTTTCTTCAACTCTTTTTCCCAACAAACCATCAGTGTTTTCGTCTAAACGGGCGGGTTTGCCTGGAGGGCCAGATTAGATTGTCGACGAGAGTCGCCTAAACTTGTTTGCCCGAGTTAAATCAGCATAAGAAAAAAAAACTTTTGGAAACTTGGAAATTTTGAATTTGACTGTCAGGTCGAAATATCGAAATTCTGATGAACTGGAGAACTCAAATCATAAAAGTACAATTTTCTCTTCAAAACTAAAAAGTCGAAAAACCGAAAAGTTGAGGAAATGCTCTCTGATGTTCTAAAAAGAAAGAAAATGTATTTTGCAGTATGTCGGAAGCATGGAAATTCCTAGACCCGGGACGAGAATCGAAATTGTGGCGGCAATGCGGAGAGTTCGGGTAAGAACATTTTGGGGATAAAAAATTGAAAAACTCTTGATATGGCAATTTCATAAAGTAGAAGCGCTAAATCCATAAGCAGCGAACCGTGTTTCTCTAACAGGAGCCCATCCAAACCGTCAACTTTGAGCTGAATTATCTCGATTTTTGTGAAAGTTATCGAAACTTGCCAACTGATAAATTATGAATCAAAACATCAC</canonical>
            <polymorphic>GAAAGATATCAACAAGTGGTCAACTGATAAAAGGTTTTGGAAACTATGATAGACATTTTGTTAGTGAGATATATGGACTCAAAGTGGACGGTTTTCTTTTTAAGTGTTCACGATGCGTCCATTACCTACTCAACCTTTCTTTGTTTCAAATTTTCCTAACTGGTTTTTTTTTGCGTGCTCCAATTCCTCTCCCCAAAAATTCTTCCTAAACTCATTTCTTAGTTTTTTGCAGAGGTGAGGATATAATGCCTGTGCGGAAAAAGCATGGTCCGTACGATATCATCGCTGACGATGTGTACGACTGCCGAATTCCACTTCACAACGAACTCGCTTATCAGCATGGTATTCATTTCGAAGCAAAGGTATTTTTTTTTTTTGGAACCTTAAAAAAAAACTTTTCTGTTCTTCGACTTTCTTCAACTCTTTTTCCCAACAAACCATCAGTGTTTTCGTCTAAACGGGCGGGTTTGCCTGGAGGGCCAGATTAGATTGTCGACGARAGTCGCCTAAACTTGTTTGCCCGAGTTAAATCAGCATAAGAAAAAAAAACTTTTGGAAACTTGGAAATTTTGAATTTGACTGTCAGGTCGAAATATCGAAATTCTGATGAACTGGAGAACTCAAATCATAAAAGTACAATTTTCTCTTCAAAACTAAAAAGTCGAAAAACCGAAAAGTTGAGGAAATGCTCTCTGATGTTCTAAAAAGAAAGAAAATGTATTTTGCAGTATGTCGGAAGCATGGAAATTCCTAGACCCGGGACGAGAATCGAAATTGTGGCGGCAATGCGGAGAGTTCGGGTAAGAACATTTTGGGGATAAAAAATTGAAAAACTCTTGATATGGCAATTTCATAAAGTAGAAGCGCTAAATCCATAAGCAGCGAACCGTGTTTCTCTAACAGGAGCCCATCCAAACCGTCAACTTTGAGCTGAATTATCTCGATTTTTGTGAAAGTTATCGAAACTTGCCAACTGATAAATTATGAATCAAAACATCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>424 266 220 76 14</canonical_bands>
                <polymorphic_bands>690 220 76 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACTTTTCTGTTCTTCGACTT</pcr_primer_p1>
		<pcr_primer_p2>TTATGATTTGAGTTCTCCAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>AAAACTTTTCTGTTCTTCGACTTTCTTCAACTCTTTTTCCCAACAAACCATCAGTGTTTTCGTCTAAACGGGCGGGTTTGCCTGGAGGGCCAGATTAGATTGTCGACGAGAGTCGCCTAAACTTGTTTGCCCGAGTTAAATCAGCATAAGAAAAAAAAACTTTTGGAAACTTGGAAATTTTGAATTTGACTGTCAGGTCGAAATATCGAAATTCTGATGAACTGGAGAACTCAAATCATAA</canonical_amplicon>
		<polymorphic_amplicon>AAAACTTTTCTGTTCTTCGACTTTCTTCAACTCTTTTTCCCAACAAACCATCAGTGTTTTCGTCTAAACGGGCGGGTTTGCCTGGAGGGCCAGATTAGATTGTCGACGARAGTCGCCTAAACTTGTTTGCCCGAGTTAAATCAGCATAAGAAAAAAAAACTTTTGGAAACTTGGAAATTTTGAATTTGACTGTCAGGTCGAAATATCGAAATTCTGATGAACTGGAGAACTCAAATCATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21011</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>497262</contig_pos>
        <strand>+</strand>
        <context>CGACTTTCTT[C/T]AACTCTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTTTTTGGAACCTTAAAAAAAAACTTTTCTGTTCTTCGACTTTCTT</left_flank>
        <right_flank>AACTCTTTTTCCCAACAAACCATCAGTGTTTTCGTCTAAACGGGCGGGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGTTTAATGTCTACCGTAAACACTCTAACAGAATTACTCACCTAACTTTCAACTTAAAGCCATTTTATCTTGGTTTCTGTGAAAGATATCAACAAGTGGTCAACTGATAAAAGGTTTTGGAAACTATGATAGACATTTTGTTAGTGAGATATATGGACTCAAAGTGGACGGTTTTCTTTTTAAGTGTTCACGATGCGTCCATTACCTACTCAACCTTTCTTTGTTTCAAATTTTCCTAACTGGTTTTTTTTTGCGTGCTCCAATTCCTCTCCCCAAAAATTCTTCCTAAACTCATTTCTTAGTTTTTTGCAGAGGTGAGGATATAATGCCTGTGCGGAAAAAGCATGGTCCGTACGATATCATCGCTGACGATGTGTACGACTGCCGAATTCCACTTCACAACGAACTCGCTTATCAGCATGGTATTCATTTCGAAGCAAAGGTATTTTTTTTTTTTGGAACCTTAAAAAAAAACTTTTCTGTTCTTCGACTTTCTTCAACTCTTTTTCCCAACAAACCATCAGTGTTTTCGTCTAAACGGGCGGGTTTGCCTGGAGGGCCAGATTAGATTGTCGACGAGAGTCGCCTAAACTTGTTTGCCCGAGTTAAATCAGCATAAGAAAAAAAAACTTTTGGAAACTTGGAAATTTTGAATTTGACTGTCAGGTCGAAATATCGAAATTCTGATGAACTGGAGAACTCAAATCATAAAAGTACAATTTTCTCTTCAAAACTAAAAAGTCGAAAAACCGAAAAGTTGAGGAAATGCTCTCTGATGTTCTAAAAAGAAAGAAAATGTATTTTGCAGTATGTCGGAAGCATGGAAATTCCTAGACCCGGGACGAGAATCGAAATTGTGGCGGCAATGCGGAGAGTTCGGGTAAGAACATTTTGGGGATAAAAAATTGAAAAACTCTTGATATGGCAATTTCATAAAGTAGAAGCGCTAAATCCATAAGCAGCGAACCGTGTTTCTCTAACAGGAGCCCATCCAAACC</canonical>
            <polymorphic>CTTGTTTAATGTCTACCGTAAACACTCTAACAGAATTACTCACCTAACTTTCAACTTAAAGCCATTTTATCTTGGTTTCTGTGAAAGATATCAACAAGTGGTCAACTGATAAAAGGTTTTGGAAACTATGATAGACATTTTGTTAGTGAGATATATGGACTCAAAGTGGACGGTTTTCTTTTTAAGTGTTCACGATGCGTCCATTACCTACTCAACCTTTCTTTGTTTCAAATTTTCCTAACTGGTTTTTTTTTGCGTGCTCCAATTCCTCTCCCCAAAAATTCTTCCTAAACTCATTTCTTAGTTTTTTGCAGAGGTGAGGATATAATGCCTGTGCGGAAAAAGCATGGTCCGTACGATATCATCGCTGACGATGTGTACGACTGCCGAATTCCACTTCACAACGAACTCGCTTATCAGCATGGTATTCATTTCGAAGCAAAGGTATTTTTTTTTTTTGGAACCTTAAAAAAAAACTTTTCTGTTCTTCGACTTTCTTYAACTCTTTTTCCCAACAAACCATCAGTGTTTTCGTCTAAACGGGCGGGTTTGCCTGGAGGGCCAGATTAGATTGTCGACGAGAGTCGCCTAAACTTGTTTGCCCGAGTTAAATCAGCATAAGAAAAAAAAACTTTTGGAAACTTGGAAATTTTGAATTTGACTGTCAGGTCGAAATATCGAAATTCTGATGAACTGGAGAACTCAAATCATAAAAGTACAATTTTCTCTTCAAAACTAAAAAGTCGAAAAACCGAAAAGTTGAGGAAATGCTCTCTGATGTTCTAAAAAGAAAGAAAATGTATTTTGCAGTATGTCGGAAGCATGGAAATTCCTAGACCCGGGACGAGAATCGAAATTGTGGCGGCAATGCGGAGAGTTCGGGTAAGAACATTTTGGGGATAAAAAATTGAAAAACTCTTGATATGGCAATTTCATAAAGTAGAAGCGCTAAATCCATAAGCAGCGAACCGTGTTTCTCTAACAGGAGCCCATCCAAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTATCAGCATGGTATTCATTTC</pcr_primer_p1>
		<pcr_primer_p2>AAATTTCCAAGTTTCCAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CTTATCAGCATGGTATTCATTTCGAAGCAAAGGTATTTTTTTTTTTTGGAACCTTAAAAAAAAACTTTTCTGTTCTTCGACTTTCTTCAACTCTTTTTCCCAACAAACCATCAGTGTTTTCGTCTAAACGGGCGGGTTTGCCTGGAGGGCCAGATTAGATTGTCGACGAGAGTCGCCTAAACTTGTTTGCCCGAGTTAAATCAGCATAAGAAAAAAAAACTTTTGGAAACTTGGAAATTT</canonical_amplicon>
		<polymorphic_amplicon>CTTATCAGCATGGTATTCATTTCGAAGCAAAGGTATTTTTTTTTTTTGGAACCTTAAAAAAAAACTTTTCTGTTCTTCGACTTTCTTYAACTCTTTTTCCCAACAAACCATCAGTGTTTTCGTCTAAACGGGCGGGTTTGCCTGGAGGGCCAGATTAGATTGTCGACGAGAGTCGCCTAAACTTGTTTGCCCGAGTTAAATCAGCATAAGAAAAAAAAACTTTTGGAAACTTGGAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21013</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>584130</contig_pos>
        <strand>+</strand>
        <context>TTCTATCACT[A/G]ATTTTGAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATAAAACAATTTTCCACTCCCCCAATTGTTTTGAAACGTTCTATCACT</left_flank>
        <right_flank>ATTTTGAAATAGATCACTGAAAAACAGTGTCATTGCCTGCGTCTCTCACT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGTTTCATAGCAACTATTAGAATTCAAATCGAATTAGAGAGAAGAGAAAAGAAAGAAGACACGTTTTTGTTTTTTCTTTTTCAAACAAAATTGAGAAATTATGATTTGGGACACTTGAAGTTTTGGGAAAGATTTTAAGCATTTTACAATATCTGTTTTTTAATTATAGGGTTGCTTTTAATTAGTTACACATCTCTCAAAGTTTGCAACCTTACCGTAGAGATACTTTCAATAACCTGGACTCTGAAAAGTTTTTTTAGTTCTGTAATCGTTCAGCTCGTTACATTCAGTTACGAAAAATCGGAGCTGTAGAAAGGTGACAGTAGACGAAGATCCCACAACGACAACTACAGTAACCTGAAAGTATTTTCATATTACGTCGTGTGGCATCTTGGGCCACGGCCACGGCCACTCATTTCTCTTCCACAGTCCCCATGTTTTCGTATCAACATAAAACAATTTTCCACTCCCCCAATTGTTTTGAAACGTTCTATCACTGATTTTGAAATAGATCACTGAAAAACAGTGTCATTGCCTGCGTCTCTCACTAGCTCTATGATATCTCATTTTTGTTTTTTTCCATGTTGCTTCAATAGGAGGAATTGAGTCATAATGTCATTCAACGCCGATTTTCTTGTCGTGTCAATTTTCCCTCTTCATTTCCTCGGACCACTTTCCCCTACCGCAAAACGCAATTACACCTATTCCTTGTTTGTTTTTTTCTGATTTACAGAATTGTGACGGATTCTCAAACATGGGTTCCAAAGCATCGACACAAGGCGAGAAGACGGGAGAAGCCGAGAAGACCGAACTCGAACCATCGTGAGTTACTGGGCAAATTTGGAAATCATACTGTACTAGAAATCTTAGGAGTTTATTCAGCAGTCATATTTTGAAGTAGAAATCCAACTTTCTCATTATAAAGACTCGAACGATAGAGAAAACAATTGAAATTAGATTTCAAAATGTAAAAGAAAAATTGAAAGTGATACCGCTCAA</canonical>
            <polymorphic>CGGTTTCATAGCAACTATTAGAATTCAAATCGAATTAGAGAGAAGAGAAAAGAAAGAAGACACGTTTTTGTTTTTTCTTTTTCAAACAAAATTGAGAAATTATGATTTGGGACACTTGAAGTTTTGGGAAAGATTTTAAGCATTTTACAATATCTGTTTTTTAATTATAGGGTTGCTTTTAATTAGTTACACATCTCTCAAAGTTTGCAACCTTACCGTAGAGATACTTTCAATAACCTGGACTCTGAAAAGTTTTTTTAGTTCTGTAATCGTTCAGCTCGTTACATTCAGTTACGAAAAATCGGAGCTGTAGAAAGGTGACAGTAGACGAAGATCCCACAACGACAACTACAGTAACCTGAAAGTATTTTCATATTACGTCGTGTGGCATCTTGGGCCACGGCCACGGCCACTCATTTCTCTTCCACAGTCCCCATGTTTTCGTATCAACATAAAACAATTTTCCACTCCCCCAATTGTTTTGAAACGTTCTATCACTRATTTTGAAATAGATCACTGAAAAACAGTGTCATTGCCTGCGTCTCTCACTAGCTCTATGATATCTCATTTTTGTTTTTTTCCATGTTGCTTCAATAGGAGGAATTGAGTCATAATGTCATTCAACGCCGATTTTCTTGTCGTGTCAATTTTCCCTCTTCATTTCCTCGGACCACTTTCCCCTACCGCAAAACGCAATTACACCTATTCCTTGTTTGTTTTTTTCTGATTTACAGAATTGTGACGGATTCTCAAACATGGGTTCCAAAGCATCGACACAAGGCGAGAAGACGGGAGAAGCCGAGAAGACCGAACTCGAACCATCGTGAGTTACTGGGCAAATTTGGAAATCATACTGTACTAGAAATCTTAGGAGTTTATTCAGCAGTCATATTTTGAAGTAGAAATCCAACTTTCTCATTATAAAGACTCGAACGATAGAGAAAACAATTGAAATTAGATTTCAAAATGTAAAAGAAAAATTGAAAGTGATACCGCTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTAATCGTTCAGCTCGTTA</pcr_primer_p1>
		<pcr_primer_p2>TGAGATATCATAGAGCTAGTGAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>304</pcr_amplicon_size>
		<canonical_amplicon>CTGTAATCGTTCAGCTCGTTACATTCAGTTACGAAAAATCGGAGCTGTAGAAAGGTGACAGTAGACGAAGATCCCACAACGACAACTACAGTAACCTGAAAGTATTTTCATATTACGTCGTGTGGCATCTTGGGCCACGGCCACGGCCACTCATTTCTCTTCCACAGTCCCCATGTTTTCGTATCAACATAAAACAATTTTCCACTCCCCCAATTGTTTTGAAACGTTCTATCACTGATTTTGAAATAGATCACTGAAAAACAGTGTCATTGCCTGCGTCTCTCACTAGCTCTATGATATCTCA</canonical_amplicon>
		<polymorphic_amplicon>CTGTAATCGTTCAGCTCGTTACATTCAGTTACGAAAAATCGGAGCTGTAGAAAGGTGACAGTAGACGAAGATCCCACAACGACAACTACAGTAACCTGAAAGTATTTTCATATTACGTCGTGTGGCATCTTGGGCCACGGCCACGGCCACTCATTTCTCTTCCACAGTCCCCATGTTTTCGTATCAACATAAAACAATTTTCCACTCCCCCAATTGTTTTGAAACGTTCTATCACTRATTTTGAAATAGATCACTGAAAAACAGTGTCATTGCCTGCGTCTCTCACTAGCTCTATGATATCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21015</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>588880</contig_pos>
        <strand>+</strand>
        <context>CCGATTTTTC[A/T]ATGTTCTGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCTTTTCTTTCCTTTTCTTCCCTTTTTTCTATTTAATACCCCGATTTTTC</left_flank>
        <right_flank>ATGTTCTGGTACAATTACCCCAAATTGAACCAGTTCATCGCCCGTGTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTGCGATGTTCCGGAATTCAAGAAGGCACTCATAATGTGTAGAGCTCTCGAGTATGATGAGAAACCAAACTATGAAAAATTTAAACGGGTGTTCAAGTTGAACAGTGCACGTGCAGCCACTGTGAGCGTGTAAGCATTGAGAGGTCAGATTTTTTCGATAAAACAATTTTACAGTAAACCAGACTTGCCTAATCGAGTGTACCGCTGCAATCTCATAAGAGAGGAGGAGGAAATTTTGCTCAAGTTTGACGTCAACAAAGAAGTCACTGAGACATCTGAAATCGCGGAATTGATCGAGATGAACAACTCTCCTGATGCTGACGATTAGGATGCTGACTACTCGTCCGGATTTTAATTTTCTAATTTCTTCACCGGTCGATTTGAGTATTCTTTGCTTAACTTTGCCTTTCTATCAACATGTTTCTTTATTTTTTCCATTTTCTGTCCTTTTCTTTCCTTTTCTTCCCTTTTTTCTATTTAATACCCCGATTTTTCCATGTTCTGGTACAATTACCCCAAATTGAACCAGTTCATCGCCCGTGTCTTTTTTTCGATAATTTTGCTTTTAAATATTATACTTTCTTAAATTTGAAAAACATTTTTTTGAAAAATTTTTCAATTAGAAGATTATTTTTTGAGGGAATCGGGTTCATGTTGATTTCAAATCGGTGAGATTATGAGAATCAAATTTTTTTCAGCTAGTTTATTAGAGTTTCTATAGAATCACGTGGCTTTTTTTTGTTAGTAAGATTAAGTTTTCAATGGACACGCTTGCTTTCATTAAAAGGGGCGGTAGAAGATTATTTAAAACTTATCCGTATTCTAAGCTTTTGCTTCATATCACATGTGATATGCTTTTTTCCCGGTGATATAACTGAAAAATATTATTTCTGTTTGGATTTCATTTTTTCACAACTTCGTTTCCTCTAACCTAGTTTTGATTCAAAAAATTTTAGTGAAAGAATTGCCAAAAATCGTAATCATGATAATAAAATA</canonical>
            <polymorphic>AAATTTGCGATGTTCCGGAATTCAAGAAGGCACTCATAATGTGTAGAGCTCTCGAGTATGATGAGAAACCAAACTATGAAAAATTTAAACGGGTGTTCAAGTTGAACAGTGCACGTGCAGCCACTGTGAGCGTGTAAGCATTGAGAGGTCAGATTTTTTCGATAAAACAATTTTACAGTAAACCAGACTTGCCTAATCGAGTGTACCGCTGCAATCTCATAAGAGAGGAGGAGGAAATTTTGCTCAAGTTTGACGTCAACAAAGAAGTCACTGAGACATCTGAAATCGCGGAATTGATCGAGATGAACAACTCTCCTGATGCTGACGATTAGGATGCTGACTACTCGTCCGGATTTTAATTTTCTAATTTCTTCACCGGTCGATTTGAGTATTCTTTGCTTAACTTTGCCTTTCTATCAACATGTTTCTTTATTTTTTCCATTTTCTGTCCTTTTCTTTCCTTTTCTTCCCTTTTTTCTATTTAATACCCCGATTTTTCWATGTTCTGGTACAATTACCCCAAATTGAACCAGTTCATCGCCCGTGTCTTTTTTTCGATAATTTTGCTTTTAAATATTATACTTTCTTAAATTTGAAAAACATTTTTTTGAAAAATTTTTCAATTAGAAGATTATTTTTTGAGGGAATCGGGTTCATGTTGATTTCAAATCGGTGAGATTATGAGAATCAAATTTTTTTCAGCTAGTTTATTAGAGTTTCTATAGAATCACGTGGCTTTTTTTTGTTAGTAAGATTAAGTTTTCAATGGACACGCTTGCTTTCATTAAAAGGGGCGGTAGAAGATTATTTAAAACTTATCCGTATTCTAAGCTTTTGCTTCATATCACATGTGATATGCTTTTTTCCCGGTGATATAACTGAAAAATATTATTTCTGTTTGGATTTCATTTTTTCACAACTTCGTTTCCTCTAACCTAGTTTTGATTCAAAAAATTTTAGTGAAAGAATTGCCAAAAATCGTAATCATGATAATAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNTGG</site>
                <isoschizomers>
                    <enzyme>AccB7I</enzyme>
                    <enzyme>PflBI</enzyme>
                    <enzyme>PflMI</enzyme>
                    <enzyme>Van91I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>421 193 155 138 79 14</canonical_bands>
                <polymorphic_bands>421 234 193 138 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAACTTTGCCTTTCTATCAACAT</pcr_primer_p1>
		<pcr_primer_p2>TCATAATCTCACCGATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>TAACTTTGCCTTTCTATCAACATGTTTCTTTATTTTTTCCATTTTCTGTCCTTTTCTTTCCTTTTCTTCCCTTTTTTCTATTTAATACCCCGATTTTTCCATGTTCTGGTACAATTACCCCAAATTGAACCAGTTCATCGCCCGTGTCTTTTTTTCGATAATTTTGCTTTTAAATATTATACTTTCTTAAATTTGAAAAACATTTTTTTGAAAAATTTTTCAATTAGAAGATTATTTTTTGAGGGAATCGGGTTCATGTTGATTTCAAATCGGTGAGATTATGA</canonical_amplicon>
		<polymorphic_amplicon>TAACTTTGCCTTTCTATCAACATGTTTCTTTATTTTTTCCATTTTCTGTCCTTTTCTTTCCTTTTCTTCCCTTTTTTCTATTTAATACCCCGATTTTTCWATGTTCTGGTACAATTACCCCAAATTGAACCAGTTCATCGCCCGTGTCTTTTTTTCGATAATTTTGCTTTTAAATATTATACTTTCTTAAATTTGAAAAACATTTTTTTGAAAAATTTTTCAATTAGAAGATTATTTTTTGAGGGAATCGGGTTCATGTTGATTTCAAATCGGTGAGATTATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21017</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>588911</contig_pos>
        <strand></strand>
        <context>CAAATTGAAC[C/G]ASTTCATCGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTAATACCCCGATTTTTCCATGTTCTGGTACAATTACCCCAAATTGAAC</left_flank>
        <right_flank>AGTTCATCGCCCGTGTCTTTTTTTCGATAATTTTGCTTTTAAATATTATA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCATAATGTGTAGAGCTCTCGAGTATGATGAGAAACCAAACTATGAAAAATTTAAACGGGTGTTCAAGTTGAACAGTGCACGTGCAGCCACTGTGAGCGTGTAAGCATTGAGAGGTCAGATTTTTTCGATAAAACAATTTTACAGTAAACCAGACTTGCCTAATCGAGTGTACCGCTGCAATCTCATAAGAGAGGAGGAGGAAATTTTGCTCAAGTTTGACGTCAACAAAGAAGTCACTGAGACATCTGAAATCGCGGAATTGATCGAGATGAACAACTCTCCTGATGCTGACGATTAGGATGCTGACTACTCGTCCGGATTTTAATTTTCTAATTTCTTCACCGGTCGATTTGAGTATTCTTTGCTTAACTTTGCCTTTCTATCAACATGTTTCTTTATTTTTTCCATTTTCTGTCCTTTTCTTTCCTTTTCTTCCCTTTTTTCTATTTAATACCCCGATTTTTCCATGTTCTGGTACAATTACCCCAAATTGAACCAGTTCATCGCCCGTGTCTTTTTTTCGATAATTTTGCTTTTAAATATTATACTTTCTTAAATTTGAAAAACATTTTTTTGAAAAATTTTTCAATTAGAAGATTATTTTTTGAGGGAATCGGGTTCATGTTGATTTCAAATCGGTGAGATTATGAGAATCAAATTTTTTTCAGCTAGTTTATTAGAGTTTCTATAGAATCACGTGGCTTTTTTTTGTTAGTAAGATTAAGTTTTCAATGGACACGCTTGCTTTCATTAAAAGGGGCGGTAGAAGATTATTTAAAACTTATCCGTATTCTAAGCTTTTGCTTCATATCACATGTGATATGCTTTTTTCCCGGTGATATAACTGAAAAATATTATTTCTGTTTGGATTTCATTTTTTCACAACTTCGTTTCCTCTAACCTAGTTTTGATTCAAAAAATTTTAGTGAAAGAATTGCCAAAAATCGTAATCATGATAATAAAATAACCTTCATAATTTAAGGCCATTCTACTATGT</canonical>
            <polymorphic>ACTCATAATGTGTAGAGCTCTCGAGTATGATGAGAAACCAAACTATGAAAAATTTAAACGGGTGTTCAAGTTGAACAGTGCACGTGCAGCCACTGTGAGCGTGTAAGCATTGAGAGGTCAGATTTTTTCGATAAAACAATTTTACAGTAAACCAGACTTGCCTAATCGAGTGTACCGCTGCAATCTCATAAGAGAGGAGGAGGAAATTTTGCTCAAGTTTGACGTCAACAAAGAAGTCACTGAGACATCTGAAATCGCGGAATTGATCGAGATGAACAACTCTCCTGATGCTGACGATTAGGATGCTGACTACTCGTCCGGATTTTAATTTTCTAATTTCTTCACCGGTCGATTTGAGTATTCTTTGCTTAACTTTGCCTTTCTATCAACATGTTTCTTTATTTTTTCCATTTTCTGTCCTTTTCTTTCCTTTTCTTCCCTTTTTTCTATTTAATACCCCGATTTTTCCATGTTCTGGTACAATTACCCCAAATTGAACSAGTTCATCGCCCGTGTCTTTTTTTCGATAATTTTGCTTTTAAATATTATACTTTCTTAAATTTGAAAAACATTTTTTTGAAAAATTTTTCAATTAGAAGATTATTTTTTGAGGGAATCGGGTTCATGTTGATTTCAAATCGGTGAGATTATGAGAATCAAATTTTTTTCAGCTAGTTTATTAGAGTTTCTATAGAATCACGTGGCTTTTTTTTGTTAGTAAGATTAAGTTTTCAATGGACACGCTTGCTTTCATTAAAAGGGGCGGTAGAAGATTATTTAAAACTTATCCGTATTCTAAGCTTTTGCTTCATATCACATGTGATATGCTTTTTTCCCGGTGATATAACTGAAAAATATTATTTCTGTTTGGATTTCATTTTTTCACAACTTCGTTTCCTCTAACCTAGTTTTGATTCAAAAAATTTTAGTGAAAGAATTGCCAAAAATCGTAATCATGATAATAAAATAACCTTCATAATTTAAGGCCATTCTACTATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTATTTAATACCCCGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTGATTCTCATAATCTCACC</pcr_primer_p2>
		<pcr_amplicon_size>220</pcr_amplicon_size>
		<canonical_amplicon>TTCTATTTAATACCCCGATTTTTCCATGTTCTGGTACAATTACCCCAAATTGAACCAGTTCATCGCCCGTGTCTTTTTTTCGATAATTTTGCTTTTAAATATTATACTTTCTTAAATTTGAAAAACATTTTTTTGAAAAATTTTTCAATTAGAAGATTATTTTTTGAGGGAATCGGGTTCATGTTGATTTCAAATCGGTGAGATTATGAGAATCAAATTT</canonical_amplicon>
		<polymorphic_amplicon>TTCTATTTAATACCCCGATTTTTCCATGTTCTGGTACAATTACCCCAAATTGAACSAGTTCATCGCCCGTGTCTTTTTTTCGATAATTTTGCTTTTAAATATTATACTTTCTTAAATTTGAAAAACATTTTTTTGAAAAATTTTTCAATTAGAAGATTATTTTTTGAGGGAATCGGGTTCATGTTGATTTCAAATCGGTGAGATTATGAGAATCAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21018</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>589367</contig_pos>
        <strand>+</strand>
        <context>AATCGTAATC[A/G]TGATAATAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGTTTTGATTCAAAAAATTTTAGTGAAAGAATTGCCAAAAATCGTAATC</left_flank>
        <right_flank>TGATAATAAAATAACCTTCATAATTTAAGGCCATTCTACTATGTAGAGCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCCGATTTTTCCATGTTCTGGTACAATTACCCCAAATTGAACCAGTTCATCGCCCGTGTCTTTTTTTCGATAATTTTGCTTTTAAATATTATACTTTCTTAAATTTGAAAAACATTTTTTTGAAAAATTTTTCAATTAGAAGATTATTTTTTGAGGGAATCGGGTTCATGTTGATTTCAAATCGGTGAGATTATGAGAATCAAATTTTTTTCAGCTAGTTTATTAGAGTTTCTATAGAATCACGTGGCTTTTTTTTGTTAGTAAGATTAAGTTTTCAATGGACACGCTTGCTTTCATTAAAAGGGGCGGTAGAAGATTATTTAAAACTTATCCGTATTCTAAGCTTTTGCTTCATATCACATGTGATATGCTTTTTTCCCGGTGATATAACTGAAAAATATTATTTCTGTTTGGATTTCATTTTTTCACAACTTCGTTTCCTCTAACCTAGTTTTGATTCAAAAAATTTTAGTGAAAGAATTGCCAAAAATCGTAATCATGATAATAAAATAACCTTCATAATTTAAGGCCATTCTACTATGTAGAGCATTATGTGTATATGTTCAAAGACCTCCTCCCAAAAAATGGCGAAAAATTAAAAAAAAATTAGGCTCAATATTTGTTTTTCTTGTTTCCTATAATTTTCACACCAAAATGCTCATCTCATTTATTCTCAAATTTGTACCTGAAAAAAAATCTAGAGTCGTTTCTGTGTCTACGGTTTAAGAATTGAATTCGAAGAAAATTTTCAGAGTTAAAATAATTTTGCTCTCCATTTTAATTTTTCTATTCTTGATTAAAAAGAACTTTCCCATACAAAATCCTCTTTTGTTTCATTTATCTTGAATATTTACAGACCAGACTAATCATGTCTTCTAACCATGTGCCTCTAGAACCATTTGACATAACTCGTATGATTGAGTGAGTTGCTCAGTACACAACAACAATTTTCAGAGCGATACGAAGTACAACCGAAAACGAACCAACATTGGAAGGAGA</canonical>
            <polymorphic>CCCCGATTTTTCCATGTTCTGGTACAATTACCCCAAATTGAACCAGTTCATCGCCCGTGTCTTTTTTTCGATAATTTTGCTTTTAAATATTATACTTTCTTAAATTTGAAAAACATTTTTTTGAAAAATTTTTCAATTAGAAGATTATTTTTTGAGGGAATCGGGTTCATGTTGATTTCAAATCGGTGAGATTATGAGAATCAAATTTTTTTCAGCTAGTTTATTAGAGTTTCTATAGAATCACGTGGCTTTTTTTTGTTAGTAAGATTAAGTTTTCAATGGACACGCTTGCTTTCATTAAAAGGGGCGGTAGAAGATTATTTAAAACTTATCCGTATTCTAAGCTTTTGCTTCATATCACATGTGATATGCTTTTTTCCCGGTGATATAACTGAAAAATATTATTTCTGTTTGGATTTCATTTTTTCACAACTTCGTTTCCTCTAACCTAGTTTTGATTCAAAAAATTTTAGTGAAAGAATTGCCAAAAATCGTAATCRTGATAATAAAATAACCTTCATAATTTAAGGCCATTCTACTATGTAGAGCATTATGTGTATATGTTCAAAGACCTCCTCCCAAAAAATGGCGAAAAATTAAAAAAAAATTAGGCTCAATATTTGTTTTTCTTGTTTCCTATAATTTTCACACCAAAATGCTCATCTCATTTATTCTCAAATTTGTACCTGAAAAAAAATCTAGAGTCGTTTCTGTGTCTACGGTTTAAGAATTGAATTCGAAGAAAATTTTCAGAGTTAAAATAATTTTGCTCTCCATTTTAATTTTTCTATTCTTGATTAAAAAGAACTTTCCCATACAAAATCCTCTTTTGTTTCATTTATCTTGAATATTTACAGACCAGACTAATCATGTCTTCTAACCATGTGCCTCTAGAACCATTTGACATAACTCGTATGATTGAGTGAGTTGCTCAGTACACAACAACAATTTTCAGAGCGATACGAAGTACAACCGAAAACGAACCAACATTGGAAGGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>370 193 155 138 118 13 13</canonical_bands>
                <polymorphic_bands>508 193 155 118 13 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTTCGTTTCCTCTAACCTAGT</pcr_primer_p1>
		<pcr_primer_p2>GAATAAATGAGATGAGCATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AACTTCGTTTCCTCTAACCTAGTTTTGATTCAAAAAATTTTAGTGAAAGAATTGCCAAAAATCGTAATCATGATAATAAAATAACCTTCATAATTTAAGGCCATTCTACTATGTAGAGCATTATGTGTATATGTTCAAAGACCTCCTCCCAAAAAATGGCGAAAAATTAAAAAAAAATTAGGCTCAATATTTGTTTTTCTTGTTTCCTATAATTTTCACACCAAAATGCTCATCTCATTTATTC</canonical_amplicon>
		<polymorphic_amplicon>AACTTCGTTTCCTCTAACCTAGTTTTGATTCAAAAAATTTTAGTGAAAGAATTGCCAAAAATCGTAATCRTGATAATAAAATAACCTTCATAATTTAAGGCCATTCTACTATGTAGAGCATTATGTGTATATGTTCAAAGACCTCCTCCCAAAAAATGGCGAAAAATTAAAAAAAAATTAGGCTCAATATTTGTTTTTCTTGTTTCCTATAATTTTCACACCAAAATGCTCATCTCATTTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21019</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>590552</contig_pos>
        <strand>+</strand>
        <context>GTGCGTGAAT[A/G]TGTGTTATTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTCATTTCCGACTCCCCGCTTTCCCCCTTTTTTGTTTTGTGCGTGAAT</left_flank>
        <right_flank>TGTGTTATTAACAATTTTCTCAAAAAAACCTATTCTAATATCCATTACTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTAATTAAAAATGAAAAAAAGAGCAATGTGATTTTTTAAAGAATTTAGAAATAATTAACAGGTGTTTTTTAATGCATGGAGGTTGTGAAATTTCATCAGTTTCGTTCTCTTTATCTTCTTCCCTCTTTTTGTATATTTGATCCAAAGAACTAGTTCACAAACTTTAGATGCTTCCAGCTCCTTTAGAAACCACAGATAAGGTTATAACACCAATACGGACGACCGGATGACTCTTCGCTTTTGTTCTAACCCAAAATAGATTCTTTTCCCCATTCCTTTCTTTTTGAAGGTTTCGTACAATTTAGGCAGATCTCTATCTAAATAATTTTCAATTTCGAAGATTGTAGCTCTGCAAATCCCATCCACATTTAAATTGTATTCTATACATCCATTTTCATGTTCCTCTTTTTCTTTTCCATATTTTCGTCAATCGCACCAGTGTTTTTTTTGTTCATTTCCGACTCCCCGCTTTCCCCCTTTTTTGTTTTGTGCGTGAATGTGTGTTATTAACAATTTTCTCAAAAAAACCTATTCTAATATCCATTACTTTTGTCTGATTATCTGTCTTGGCTAACTTTTGGTGTTATAACCTTATCACAACAATTTTTCCTTTTTTTTTCCAATTATCATCAGTTTCCACAACTAGTGACTCACCGGATCCCTTCTCAGCCCTCCCCAGATATGACTGTTTATTGTGAAAAATATCGGCGAAAAAACAATCAAAACATTCGTTCGAAAAAAAAATTGGCGGTCCGTACGTCTGCGTCTCTTTCTCTCTCTCCCAAAAGGTTTTGAGGGTCTAGGGATTCATTTTACTGTTATTCTTCTAAAGATTTCTGAAAACCCACTCATATTTTGAAATTCATAATTTTCAATAGCTTTATCACCCACTTGTCTTTCATCCTATCTGTATTCAAGCGAGGACTGTGAAGATGGGATCGAAGAACGGAAAGCATTTGGATCCAATTGCACCAAAAGCAGAACCCGAGTAAGTATCAG</canonical>
            <polymorphic>ACTAATTAAAAATGAAAAAAAGAGCAATGTGATTTTTTAAAGAATTTAGAAATAATTAACAGGTGTTTTTTAATGCATGGAGGTTGTGAAATTTCATCAGTTTCGTTCTCTTTATCTTCTTCCCTCTTTTTGTATATTTGATCCAAAGAACTAGTTCACAAACTTTAGATGCTTCCAGCTCCTTTAGAAACCACAGATAAGGTTATAACACCAATACGGACGACCGGATGACTCTTCGCTTTTGTTCTAACCCAAAATAGATTCTTTTCCCCATTCCTTTCTTTTTGAAGGTTTCGTACAATTTAGGCAGATCTCTATCTAAATAATTTTCAATTTCGAAGATTGTAGCTCTGCAAATCCCATCCACATTTAAATTGTATTCTATACATCCATTTTCATGTTCCTCTTTTTCTTTTCCATATTTTCGTCAATCGCACCAGTGTTTTTTTTGTTCATTTCCGACTCCCCGCTTTCCCCCTTTTTTGTTTTGTGCGTGAATRTGTGTTATTAACAATTTTCTCAAAAAAACCTATTCTAATATCCATTACTTTTGTCTGATTATCTGTCTTGGCTAACTTTTGGTGTTATAACCTTATCACAACAATTTTTCCTTTTTTTTTCCAATTATCATCAGTTTCCACAACTAGTGACTCACCGGATCCCTTCTCAGCCCTCCCCAGATATGACTGTTTATTGTGAAAAATATCGGCGAAAAAACAATCAAAACATTCGTTCGAAAAAAAAATTGGCGGTCCGTACGTCTGCGTCTCTTTCTCTCTCTCCCAAAAGGTTTTGAGGGTCTAGGGATTCATTTTACTGTTATTCTTCTAAAGATTTCTGAAAACCCACTCATATTTTGAAATTCATAATTTTCAATAGCTTTATCACCCACTTGTCTTTCATCCTATCTGTATTCAAGCGAGGACTGTGAAGATGGGATCGAAGAACGGAAAGCATTTGGATCCAATTGCACCAAAAGCAGAACCCGAGTAAGTATCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>156 150 80 70 70 50 44 42 42 39 39 35 34 31 28 23 17 14 9 6 6 5 4 4 2</canonical_bands>
                <polymorphic_bands>156 150 80 70 70 50 44 42 42 39 39 35 34 31 28 23 17 14 9 8 6 5 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTCTTTTTCTTTTCCATATTTT</pcr_primer_p1>
		<pcr_primer_p2>AGTCACTAGTTGTGGAAACTGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTCTTTTTCTTTTCCATATTTTCGTCAATCGCACCAGTGTTTTTTTTGTTCATTTCCGACTCCCCGCTTTCCCCCTTTTTTGTTTTGTGCGTGAATGTGTGTTATTAACAATTTTCTCAAAAAAACCTATTCTAATATCCATTACTTTTGTCTGATTATCTGTCTTGGCTAACTTTTGGTGTTATAACCTTATCACAACAATTTTTCCTTTTTTTTTCCAATTATCATCAGTTTCCACAACTAGTGACT</canonical_amplicon>
		<polymorphic_amplicon>CCTCTTTTTCTTTTCCATATTTTCGTCAATCGCACCAGTGTTTTTTTTGTTCATTTCCGACTCCCCGCTTTCCCCCTTTTTTGTTTTGTGCGTGAATRTGTGTTATTAACAATTTTCTCAAAAAAACCTATTCTAATATCCATTACTTTTGTCTGATTATCTGTCTTGGCTAACTTTTGGTGTTATAACCTTATCACAACAATTTTTCCTTTTTTTTTCCAATTATCATCAGTTTCCACAACTAGTGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21020</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>590411</contig_pos>
        <strand>+</strand>
        <context>CTCTGCAAAT[C/T]CCATCCACAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGATCTCTATCTAAATAATTTTCAATTTCGAAGATTGTAGCTCTGCAAAT</left_flank>
        <right_flank>CCATCCACATTTAAATTGTATTCTATACATCCATTTTCATGTTCCTCTTT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATACAAGGAGAATCGTGGAAGGGGCGATGAGACACCTAGAGAATAGAATTCAAGCCATGGTCGAGGAGCTGGAAAAAGCGTTGAAGCGAGGAGTTCATCATGGTTACATCAAGAAACCAAGTTCCTGCAAACTGGGATATGACTAATTAAAAATGAAAAAAAGAGCAATGTGATTTTTTAAAGAATTTAGAAATAATTAACAGGTGTTTTTTAATGCATGGAGGTTGTGAAATTTCATCAGTTTCGTTCTCTTTATCTTCTTCCCTCTTTTTGTATATTTGATCCAAAGAACTAGTTCACAAACTTTAGATGCTTCCAGCTCCTTTAGAAACCACAGATAAGGTTATAACACCAATACGGACGACCGGATGACTCTTCGCTTTTGTTCTAACCCAAAATAGATTCTTTTCCCCATTCCTTTCTTTTTGAAGGTTTCGTACAATTTAGGCAGATCTCTATCTAAATAATTTTCAATTTCGAAGATTGTAGCTCTGCAAATCCCATCCACATTTAAATTGTATTCTATACATCCATTTTCATGTTCCTCTTTTTCTTTTCCATATTTTCGTCAATCGCACCAGTGTTTTTTTTGTTCATTTCCGACTCCCCGCTTTCCCCCTTTTTTGTTTTGTGCGTGAATGTGTGTTATTAACAATTTTCTCAAAAAAACCTATTCTAATATCCATTACTTTTGTCTGATTATCTGTCTTGGCTAACTTTTGGTGTTATAACCTTATCACAACAATTTTTCCTTTTTTTTTCCAATTATCATCAGTTTCCACAACTAGTGACTCACCGGATCCCTTCTCAGCCCTCCCCAGATATGACTGTTTATTGTGAAAAATATCGGCGAAAAAACAATCAAAACATTCGTTCGAAAAAAAAATTGGCGGTCCGTACGTCTGCGTCTCTTTCTCTCTCTCCCAAAAGGTTTTGAGGGTCTAGGGATTCATTTTACTGTTATTCTTCTAAAGATTTCTGAAAACCCACTCATATTTTG</canonical>
            <polymorphic>ATACAAGGAGAATCGTGGAAGGGGCGATGAGACACCTAGAGAATAGAATTCAAGCCATGGTCGAGGAGCTGGAAAAAGCGTTGAAGCGAGGAGTTCATCATGGTTACATCAAGAAACCAAGTTCCTGCAAACTGGGATATGACTAATTAAAAATGAAAAAAAGAGCAATGTGATTTTTTAAAGAATTTAGAAATAATTAACAGGTGTTTTTTAATGCATGGAGGTTGTGAAATTTCATCAGTTTCGTTCTCTTTATCTTCTTCCCTCTTTTTGTATATTTGATCCAAAGAACTAGTTCACAAACTTTAGATGCTTCCAGCTCCTTTAGAAACCACAGATAAGGTTATAACACCAATACGGACGACCGGATGACTCTTCGCTTTTGTTCTAACCCAAAATAGATTCTTTTCCCCATTCCTTTCTTTTTGAAGGTTTCGTACAATTTAGGCAGATCTCTATCTAAATAATTTTCAATTTCGAAGATTGTAGCTCTGCAAATYCCATCCACATTTAAATTGTATTCTATACATCCATTTTCATGTTCCTCTTTTTCTTTTCCATATTTTCGTCAATCGCACCAGTGTTTTTTTTGTTCATTTCCGACTCCCCGCTTTCCCCCTTTTTTGTTTTGTGCGTGAATGTGTGTTATTAACAATTTTCTCAAAAAAACCTATTCTAATATCCATTACTTTTGTCTGATTATCTGTCTTGGCTAACTTTTGGTGTTATAACCTTATCACAACAATTTTTCCTTTTTTTTTCCAATTATCATCAGTTTCCACAACTAGTGACTCACCGGATCCCTTCTCAGCCCTCCCCAGATATGACTGTTTATTGTGAAAAATATCGGCGAAAAAACAATCAAAACATTCGTTCGAAAAAAAAATTGGCGGTCCGTACGTCTGCGTCTCTTTCTCTCTCTCCCAAAAGGTTTTGAGGGTCTAGGGATTCATTTTACTGTTATTCTTCTAAAGATTTCTGAAAACCCACTCATATTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTTAGAAACCACAGATAAGGT</pcr_primer_p1>
		<pcr_primer_p2>ACGAAAATATGGAAAAGAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCTTTAGAAACCACAGATAAGGTTATAACACCAATACGGACGACCGGATGACTCTTCGCTTTTGTTCTAACCCAAAATAGATTCTTTTCCCCATTCCTTTCTTTTTGAAGGTTTCGTACAATTTAGGCAGATCTCTATCTAAATAATTTTCAATTTCGAAGATTGTAGCTCTGCAAATCCCATCCACATTTAAATTGTATTCTATACATCCATTTTCATGTTCCTCTTTTTCTTTTCCATATTTTCGT</canonical_amplicon>
		<polymorphic_amplicon>CCTTTAGAAACCACAGATAAGGTTATAACACCAATACGGACGACCGGATGACTCTTCGCTTTTGTTCTAACCCAAAATAGATTCTTTTCCCCATTCCTTTCTTTTTGAAGGTTTCGTACAATTTAGGCAGATCTCTATCTAAATAATTTTCAATTTCGAAGATTGTAGCTCTGCAAATYCCATCCACATTTAAATTGTATTCTATACATCCATTTTCATGTTCCTCTTTTTCTTTTCCATATTTTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21021</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>591796</contig_pos>
        <strand>+</strand>
        <context>TATTTAGATA[A/C]GGTTCCAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCTCAAAAGCTACAGTAACCATACTCGTTATTTGTTTGAATATTTAGATA</left_flank>
        <right_flank>GGTTCCAGAAACAAAAATTCCAGTGTATTCCGGAAGGTTCTAGAATCATG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAGTTTAATTTTCTGGGCTATTATGGTAAAATGGCCTAAAAATAGCTTAGCATGCTCCTGGTGTGCTTCCTCGGTAATTTTGAAATGGCGGCCTAAGTTTTGCAACAAACGAGTTTTCTAGTCCATTATAGTAAAATAGCCTAACATGCCTCTGGTGTGTTTTCTAGCTCATTTTGAGGTGGTGACCTAACTTTTCCAAGTTTATTTTTCTAGGCCTTCATGATAATATGACTTGGAAATGGCTTAACGTGTCTCTGGTGTGTTTTCCAGGCCATTTTCATCTAGCGGCCTACAAAACTCGACTCGCAATAGCTAGGTGACCTTTTTTTTTGAAAAACCATGACTCATAATAGGGTAATCAGTTTTTAAAATAATTTAGAAATTTCATAATAGATCGATAATTGTGTTATCAGTTTTGACTGACCACCTGAAAAGTCTGCTGAATTGCCTCAAAAGCTACAGTAACCATACTCGTTATTTGTTTGAATATTTAGATACGGTTCCAGAAACAAAAATTCCAGTGTATTCCGGAAGGTTCTAGAATCATGACTCATAATTATAGTGTTTTTGTTTACAAGAACTGTTTTTTTGAAATGGAAAAGAATTTTATCTTAAAATGACATATCGATTTTTTTATGAAATTTAATTTCAGGTCTGAAACTATCGGATCTTCTGCGTCCGTCTGTGCTGCTCCGGACACAAATTCTAGTTCGGATTTTTCGATTGAATCCTCTGACAAACCACTCTACTCCGATATCCACTTTGGAGAGGGTCGCTTTAATATGATCAACGTCATCGGACGTGGTGGGTATGGAATTGTGGTGCTGGCAGAAGATGTGAAGACAAAGAAAAGATATGCTCTCAAAATTGGAAAGCCGGGAAGTGCATCTAGGAGAGAACTGGCTGCCTTCAAACTTGTCAATGGTACAAAGGGAGTTCCTGTTCTGATCCAGGAATGGAGAGAGTTAGGATGTGTGATCATGCAGATGCAGCTTGTC</canonical>
            <polymorphic>TTGAGTTTAATTTTCTGGGCTATTATGGTAAAATGGCCTAAAAATAGCTTAGCATGCTCCTGGTGTGCTTCCTCGGTAATTTTGAAATGGCGGCCTAAGTTTTGCAACAAACGAGTTTTCTAGTCCATTATAGTAAAATAGCCTAACATGCCTCTGGTGTGTTTTCTAGCTCATTTTGAGGTGGTGACCTAACTTTTCCAAGTTTATTTTTCTAGGCCTTCATGATAATATGACTTGGAAATGGCTTAACGTGTCTCTGGTGTGTTTTCCAGGCCATTTTCATCTAGCGGCCTACAAAACTCGACTCGCAATAGCTAGGTGACCTTTTTTTTTGAAAAACCATGACTCATAATAGGGTAATCAGTTTTTAAAATAATTTAGAAATTTCATAATAGATCGATAATTGTGTTATCAGTTTTGACTGACCACCTGAAAAGTCTGCTGAATTGCCTCAAAAGCTACAGTAACCATACTCGTTATTTGTTTGAATATTTAGATAMGGTTCCAGAAACAAAAATTCCAGTGTATTCCGGAAGGTTCTAGAATCATGACTCATAATTATAGTGTTTTTGTTTACAAGAACTGTTTTTTTGAAATGGAAAAGAATTTTATCTTAAAATGACATATCGATTTTTTTATGAAATTTAATTTCAGGTCTGAAACTATCGGATCTTCTGCGTCCGTCTGTGCTGCTCCGGACACAAATTCTAGTTCGGATTTTTCGATTGAATCCTCTGACAAACCACTCTACTCCGATATCCACTTTGGAGAGGGTCGCTTTAATATGATCAACGTCATCGGACGTGGTGGGTATGGAATTGTGGTGCTGGCAGAAGATGTGAAGACAAAGAAAAGATATGCTCTCAAAATTGGAAAGCCGGGAAGTGCATCTAGGAGAGAACTGGCTGCCTTCAAACTTGTCAATGGTACAAAGGGAGTTCCTGTTCTGATCCAGGAATGGAGAGAGTTAGGATGTGTGATCATGCAGATGCAGCTTGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>463 416 83 38</canonical_bands>
                <polymorphic_bands>463 416 121</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATCGATAATTGTGTTATCAGTTT</pcr_primer_p1>
		<pcr_primer_p2>GATAAAATTCTTTTCCATTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>220</pcr_amplicon_size>
		<canonical_amplicon>AGATCGATAATTGTGTTATCAGTTTTGACTGACCACCTGAAAAGTCTGCTGAATTGCCTCAAAAGCTACAGTAACCATACTCGTTATTTGTTTGAATATTTAGATACGGTTCCAGAAACAAAAATTCCAGTGTATTCCGGAAGGTTCTAGAATCATGACTCATAATTATAGTGTTTTTGTTTACAAGAACTGTTTTTTTGAAATGGAAAAGAATTTTATC</canonical_amplicon>
		<polymorphic_amplicon>AGATCGATAATTGTGTTATCAGTTTTGACTGACCACCTGAAAAGTCTGCTGAATTGCCTCAAAAGCTACAGTAACCATACTCGTTATTTGTTTGAATATTTAGATAMGGTTCCAGAAACAAAAATTCCAGTGTATTCCGGAAGGTTCTAGAATCATGACTCATAATTATAGTGTTTTTGTTTACAAGAACTGTTTTTTTGAAATGGAAAAGAATTTTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21022</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>600098</contig_pos>
        <strand>+</strand>
        <context>TACAAAAGCG[A/G]ATGCTTTCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAAATTACAAAAACAACCAAGAGTAGTGAGATCACGCCTACAAAAGCG</left_flank>
        <right_flank>ATGCTTTCGAGCAGAATGACCGGAAAGTGCAATCCAGATTAAACGTGCAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTCGTAATTTTTTTCACTGAAAAAGAATACATATTGTTAAATTTCAAGACACATTTTGGAGGGGTCCTTCTTTACAGGAGGCCCTTCTATTACGGGGGCCTTTCTATAATAGGGAGCCCTTCTGTTTTTCCGAACATTTCTGACAGGGCCCTTCTATTAGAGGGGTCCTTCTATTGAAGGGGCTCTTCTAATACAGGTTTTACTGTATGTAATTGTTTGTTTTGCACCAACATAGCTCAGCTGCTATCGTCGCGCCATTTCGATCGGTGGGTCCACAAGTTCAAATCCTCAAAACACAAAAGAAACATTCAACATCGTTGACAAGAGATGTTTGTCCTCAATCCCACATAAAGAGGATCTGAAAATTTATAAAGAATATTTTCTTATCGAACAGCACTTATTGACGCCTCCAATCCGTTCATCCGCAAAAGTGCATATTAGTTTCGAAAAATTACAAAAACAACCAAGAGTAGTGAGATCACGCCTACAAAAGCGAATGCTTTCGAGCAGAATGACCGGAAAGTGCAATCCAGATTAAACGTGCACTTTTGAGTGAGATGGCTATGACGACACACATCGGAAATAAATTAAGGCACGAAACCCTTTAGTTCTATTTTTGAGAAAGCAATTAAAAAAGAAGAAAGGAATGCGGAATAGTGCTTTCAGAGTTTCTTTTCTTTTTTAATTAAAAAAGGTCGGACCAACTTGGAATAGATTTTTTTTCCTCAGAACAGGATCCAATCTCGAAAATCGTCAAAAATATTGCAAAAAATAGCAAAACGGTCATCAATTATAAAAATTTCAAGCCAAATGAAAGACATAAATGGGTGTTCAAAACTGTTTAATGTGTTCTTACAAAACAAACAATGCATGCTGAATATTACATAATAAATACATTCCTGCTAACTTGGGAAATGTTGTTATTCTAAATTGTCTTCTGTTTACAGTTTTTTGCAGACATCTACAAACTGATGATTATTATTTTCCACTTTCACT</canonical>
            <polymorphic>AATTTTCGTAATTTTTTTCACTGAAAAAGAATACATATTGTTAAATTTCAAGACACATTTTGGAGGGGTCCTTCTTTACAGGAGGCCCTTCTATTACGGGGGCCTTTCTATAATAGGGAGCCCTTCTGTTTTTCCGAACATTTCTGACAGGGCCCTTCTATTAGAGGGGTCCTTCTATTGAAGGGGCTCTTCTAATACAGGTTTTACTGTATGTAATTGTTTGTTTTGCACCAACATAGCTCAGCTGCTATCGTCGCGCCATTTCGATCGGTGGGTCCACAAGTTCAAATCCTCAAAACACAAAAGAAACATTCAACATCGTTGACAAGAGATGTTTGTCCTCAATCCCACATAAAGAGGATCTGAAAATTTATAAAGAATATTTTCTTATCGAACAGCACTTATTGACGCCTCCAATCCGTTCATCCGCAAAAGTGCATATTAGTTTCGAAAAATTACAAAAACAACCAAGAGTAGTGAGATCACGCCTACAAAAGCGRATGCTTTCGAGCAGAATGACCGGAAAGTGCAATCCAGATTAAACGTGCACTTTTGAGTGAGATGGCTATGACGACACACATCGGAAATAAATTAAGGCACGAAACCCTTTAGTTCTATTTTTGAGAAAGCAATTAAAAAAGAAGAAAGGAATGCGGAATAGTGCTTTCAGAGTTTCTTTTCTTTTTTAATTAAAAAAGGTCGGACCAACTTGGAATAGATTTTTTTTCCTCAGAACAGGATCCAATCTCGAAAATCGTCAAAAATATTGCAAAAAATAGCAAAACGGTCATCAATTATAAAAATTTCAAGCCAAATGAAAGACATAAATGGGTGTTCAAAACTGTTTAATGTGTTCTTACAAAACAAACAATGCATGCTGAATATTACATAATAAATACATTCCTGCTAACTTGGGAAATGTTGTTATTCTAAATTGTCTTCTGTTTACAGTTTTTTGCAGACATCTACAAACTGATGATTATTATTTTCCACTTTCACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>497 382 121</canonical_bands>
                <polymorphic_bands>618 382</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCTTATCGAACAGCACTTA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTCTCAAAAATAGAACTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCTTATCGAACAGCACTTATTGACGCCTCCAATCCGTTCATCCGCAAAAGTGCATATTAGTTTCGAAAAATTACAAAAACAACCAAGAGTAGTGAGATCACGCCTACAAAAGCGAATGCTTTCGAGCAGAATGACCGGAAAGTGCAATCCAGATTAAACGTGCACTTTTGAGTGAGATGGCTATGACGACACACATCGGAAATAAATTAAGGCACGAAACCCTTTAGTTCTATTTTTGAGAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCTTATCGAACAGCACTTATTGACGCCTCCAATCCGTTCATCCGCAAAAGTGCATATTAGTTTCGAAAAATTACAAAAACAACCAAGAGTAGTGAGATCACGCCTACAAAAGCGRATGCTTTCGAGCAGAATGACCGGAAAGTGCAATCCAGATTAAACGTGCACTTTTGAGTGAGATGGCTATGACGACACACATCGGAAATAAATTAAGGCACGAAACCCTTTAGTTCTATTTTTGAGAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21023</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>602841</contig_pos>
        <strand></strand>
        <context>TGACATTTAG[G/C]ATAAACGTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CTAGTTCGCCCCCATTTTTTTTTCCGGAACCAAACGGATATGACATTTAG</left_flank>
        <right_flank>ATAAACGTTTAGACCGGAAATTGAAGAGGCGCGTCGTCGAACGGAAATTG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTTCCAAATTATGGGTTCTTTTCTTATCATAAAAAATCAGAAATTCTGAAATCTTCTGAAAATCTTCTGGTGACTTCTTAGGACAGTTCAGTGAGCAACAACGTCAACAGTGCTCATATGTGTAGCGCATGATCTCACGCAACGTCACGGAAGGAACCAATCCGATTGAAACCACAAAAAATTCTTTCCGCTCCTTTGAGCTGGCCTGGTTTTTTTTTGTATTTTTGAGAGCGTCTTAAAAATGCAATTTTAAAAATTTCGTCACTTTTTTGAAAATTGAAAAAAAATATAGAAATGGGATCTGAACTGATAAGTAGGAATGATAAGAGATTTTTTAGATTTTTTTGCCTTCCTAATTGTTTTTGAGTAAATTTACAACAAACAACAAGTTCATGTGTCCCACTTAGAACAACATTGAATTAGTTCCTCTCATTGAAAACAATTCCACTAGTTCGCCCCCATTTTTTTTTCCGGAACCAAACGGATATGACATTTAGGATAAACGTTTAGACCGGAAATTGAAGAGGCGCGTCGTCGAACGGAAATTGGAAGTTTTAGTCTAAAGTTTATGAGAAGTGTATTCTTTTTTTCGAGCTGTAGAATGTCAAAGTGAACTTTTATGGAAGCTTAGCTGATGATCACAAGCTTATCATGTAGTGTAGTTTTGATAGACAGTTCATATTTGGACTTGTCTAGGAAAAATGATGATTATATCTGTTTTTTCATCGTTTGTCTTTTATAATCGAGAAAAAAGTTGATAGCCAGTTTTTTCTTAACCAGGAACCTAGAATAGTCAACATTTTGTGTTACAGTAGACTTCTGTTCTTTTTACTCTTCTGATTTTTCCAACTCTTGTACCATGTACCTTTAGTCTTTCCAACCATGAACTAATCTATGACGAGAACATCTTATGTTTTTTTACTCTCACGTCACGAAACTTTTTTCTCTCTCAGCTCCTCCCCGTGCAGAAACATTAGGGATTTTGGGGGCGGAGCCCG</canonical>
            <polymorphic>GCTTTCCAAATTATGGGTTCTTTTCTTATCATAAAAAATCAGAAATTCTGAAATCTTCTGAAAATCTTCTGGTGACTTCTTAGGACAGTTCAGTGAGCAACAACGTCAACAGTGCTCATATGTGTAGCGCATGATCTCACGCAACGTCACGGAAGGAACCAATCCGATTGAAACCACAAAAAATTCTTTCCGCTCCTTTGAGCTGGCCTGGTTTTTTTTTGTATTTTTGAGAGCGTCTTAAAAATGCAATTTTAAAAATTTCGTCACTTTTTTGAAAATTGAAAAAAAATATAGAAATGGGATCTGAACTGATAAGTAGGAATGATAAGAGATTTTTTAGATTTTTTTGCCTTCCTAATTGTTTTTGAGTAAATTTACAACAAACAACAAGTTCATGTGTCCCACTTAGAACAACATTGAATTAGTTCCTCTCATTGAAAACAATTCCACTAGTTCGCCCCCATTTTTTTTTCCGGAACCAAACGGATATGACATTTAGSATAAACGTTTAGACCGGAAATTGAAGAGGCGCGTCGTCGAACGGAAATTGGAAGTTTTAGTCTAAAGTTTATGAGAAGTGTATTCTTTTTTTCGAGCTGTAGAATGTCAAAGTGAACTTTTATGGAAGCTTAGCTGATGATCACAAGCTTATCATGTAGTGTAGTTTTGATAGACAGTTCATATTTGGACTTGTCTAGGAAAAATGATGATTATATCTGTTTTTTCATCGTTTGTCTTTTATAATCGAGAAAAAAGTTGATAGCCAGTTTTTTCTTAACCAGGAACCTAGAATAGTCAACATTTTGTGTTACAGTAGACTTCTGTTCTTTTTACTCTTCTGATTTTTCCAACTCTTGTACCATGTACCTTTAGTCTTTCCAACCATGAACTAATCTATGACGAGAACATCTTATGTTTTTTTACTCTCACGTCACGAAACTTTTTTCTCTCTCAGCTCCTCCCCGTGCAGAAACATTAGGGATTTTGGGGGCGGAGCCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTACAACAAACAACAAGTTCA</pcr_primer_p1>
		<pcr_primer_p2>AGTTCACTTTGACATTCTACAGC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATTTACAACAAACAACAAGTTCATGTGTCCCACTTAGAACAACATTGAATTAGTTCCTCTCATTGAAAACAATTCCACTAGTTCGCCCCCATTTTTTTTTCCGGAACCAAACGGATATGACATTTAGGATAAACGTTTAGACCGGAAATTGAAGAGGCGCGTCGTCGAACGGAAATTGGAAGTTTTAGTCTAAAGTTTATGAGAAGTGTATTCTTTTTTTCGAGCTGTAGAATGTCAAAGTGAACT</canonical_amplicon>
		<polymorphic_amplicon>AATTTACAACAAACAACAAGTTCATGTGTCCCACTTAGAACAACATTGAATTAGTTCCTCTCATTGAAAACAATTCCACTAGTTCGCCCCCATTTTTTTTTCCGGAACCAAACGGATATGACATTTAGSATAAACGTTTAGACCGGAAATTGAAGAGGCGCGTCGTCGAACGGAAATTGGAAGTTTTAGTCTAAAGTTTATGAGAAGTGTATTCTTTTTTTCGAGCTGTAGAATGTCAAAGTGAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21024</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>608596</contig_pos>
        <strand>+</strand>
        <context>ACTCGGAAAA[A/C]TTGTCGAACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAATAAATAAAAAATATACCAAATTTCTATCAAATCAAAAACTCGGAAAA</left_flank>
        <right_flank>TTGTCGAACGTTTCTGAACGAGAAAGAGCCGGGCCCCTTGGCCGAACCAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATCTTTTACAAGAATAGAGATAAATAAGCTCAAAGTTGAGGGTTCTGAGGGTTCGCGGGATACAGTATTTCGAATTTTTCTTCGAAACGCAGCTTTCCAGGATCCGTCCATTCGGCAGCAGCGATCCAGAAGTGTCGGCCAAGGAGAAATGCAGTACATGCTGCAGAAGCTGTCTGGAATATTCAGCCAAGCCGTTCATCACCATCTACAAGTACTTGGAGTACCGTTACAACTACACTCGTGCTATCTGCGGATGGGAGAGACGAGGGGAGGGAGATGAATAATCTTCACGGATGGATCTACTAGACAAATGTTAATCGGATGGCGATGTAATTATTGGGGAATATGTAGTCTATTTTTTTGGCTAGGCCGGGCCGAGTCGGGCTTTTTCAAAAGTGTTGAGGCTCGGCCCGGCTCGGGTTTACTGTAGCTTTTTTTTTCATTTTCCAATAAATAAAAAATATACCAAATTTCTATCAAATCAAAAACTCGGAAAAATTGTCGAACGTTTCTGAACGAGAAAGAGCCGGGCCCCTTGGCCGAACCAGACCGGACCGTACCTGAAAAAATTTCCTCTTAATATTTTAAAGATTTTATTCCTTATTTTTTGGTTTTTTTTTGTACTTCAAAAAATTAACTTTGAAAATGGAAACAAAAAGAAATTAGAAATGTGAAAAAATATTGTAAAAAAAAGTAAAACGTCAAACAGTAACAGCTTGCCGCCTTCTCTCGTTTAAAACTCCAGATACCGTCTCTCCTCTAAGCACGACACGGATTAGCAAATCTTCCAACAACTTAATCTTCGTCATACCCGTTTCAAACTTCTGTCTATCTTTCTGAAAAATAAATGTTCGGTTTTGAAAACACGTTTTGCAGATTTTACCGGTCTGTAAGGAAGACTTTTGCACATAAGAAACGCACTAAAGAAGTCACACAGATTCCGGATACTTGGTTGCAGTTCGGGCAACTCATTTCTCTGAAAAATCAGTTTTCATGTC</canonical>
            <polymorphic>CTATCTTTTACAAGAATAGAGATAAATAAGCTCAAAGTTGAGGGTTCTGAGGGTTCGCGGGATACAGTATTTCGAATTTTTCTTCGAAACGCAGCTTTCCAGGATCCGTCCATTCGGCAGCAGCGATCCAGAAGTGTCGGCCAAGGAGAAATGCAGTACATGCTGCAGAAGCTGTCTGGAATATTCAGCCAAGCCGTTCATCACCATCTACAAGTACTTGGAGTACCGTTACAACTACACTCGTGCTATCTGCGGATGGGAGAGACGAGGGGAGGGAGATGAATAATCTTCACGGATGGATCTACTAGACAAATGTTAATCGGATGGCGATGTAATTATTGGGGAATATGTAGTCTATTTTTTTGGCTAGGCCGGGCCGAGTCGGGCTTTTTCAAAAGTGTTGAGGCTCGGCCCGGCTCGGGTTTACTGTAGCTTTTTTTTTCATTTTCCAATAAATAAAAAATATACCAAATTTCTATCAAATCAAAAACTCGGAAAAMTTGTCGAACGTTTCTGAACGAGAAAGAGCCGGGCCCCTTGGCCGAACCAGACCGGACCGTACCTGAAAAAATTTCCTCTTAATATTTTAAAGATTTTATTCCTTATTTTTTGGTTTTTTTTTGTACTTCAAAAAATTAACTTTGAAAATGGAAACAAAAAGAAATTAGAAATGTGAAAAAATATTGTAAAAAAAAGTAAAACGTCAAACAGTAACAGCTTGCCGCCTTCTCTCGTTTAAAACTCCAGATACCGTCTCTCCTCTAAGCACGACACGGATTAGCAAATCTTCCAACAACTTAATCTTCGTCATACCCGTTTCAAACTTCTGTCTATCTTTCTGAAAAATAAATGTTCGGTTTTGAAAACACGTTTTGCAGATTTTACCGGTCTGTAAGGAAGACTTTTGCACATAAGAAACGCACTAAAGAAGTCACACAGATTCCGGATACTTGGTTGCAGTTCGGGCAACTCATTTCTCTGAAAAATCAGTTTTCATGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>338 259 137 74 71 64 29 28</canonical_bands>
                <polymorphic_bands>338 259 137 99 74 64 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCGGGTTTACTGTAGCTTTT</pcr_primer_p1>
		<pcr_primer_p2>AATTTCTTTTTGTTTCCATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCGGGTTTACTGTAGCTTTTTTTTTCATTTTCCAATAAATAAAAAATATACCAAATTTCTATCAAATCAAAAACTCGGAAAAATTGTCGAACGTTTCTGAACGAGAAAGAGCCGGGCCCCTTGGCCGAACCAGACCGGACCGTACCTGAAAAAATTTCCTCTTAATATTTTAAAGATTTTATTCCTTATTTTTTGGTTTTTTTTTGTACTTCAAAAAATTAACTTTGAAAATGGAAACAAAAAGAAATT</canonical_amplicon>
		<polymorphic_amplicon>CTCGGGTTTACTGTAGCTTTTTTTTTCATTTTCCAATAAATAAAAAATATACCAAATTTCTATCAAATCAAAAACTCGGAAAAMTTGTCGAACGTTTCTGAACGAGAAAGAGCCGGGCCCCTTGGCCGAACCAGACCGGACCGTACCTGAAAAAATTTCCTCTTAATATTTTAAAGATTTTATTCCTTATTTTTTGGTTTTTTTTTGTACTTCAAAAAATTAACTTTGAAAATGGAAACAAAAAGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21025</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>615654</contig_pos>
        <strand></strand>
        <context>CAAGAAGTAC[A/G]AATaccgtag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTTGAGTACCTCGATTCTAGAAGGCAACTCACAATGAGCAAGAAGTAC</left_flank>
        <right_flank>AATACCGTAGACACTCCAATAGCATGGACATCCTAACCGTCAACTTTAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCATTTGAGTTTTCACATAGTCTGCAGGAAAAGTGACAATTGCATTCATACAACCGGTGGCTCCGCCCACTAAGATTCCAGATAGCATTTCTTTGGGAAATTGGTAGTAGATCCATTTAGGGAGTGTTCTTAAATTATTTGTTTAAAAAAAGTTATGGTTTGGATAATCTAGAACTTACTCTGTCACTGAGTGGCACTCAAAAATTCCAGACATTTCAAACAAGAATATTTTGAAAAGATTGAAGATCTTCAAATTTAGTCTTCTGTCTGCCGACCCGTACTTTTATACAGTTTTGCAAAACTATTTCAAAGCCAACAATACAGATCTCGCAGACATGTAAATTGTGGGAACACTGCAGAGTCTATGACCATTTCGAAAAAGATGATTTGGTTGACCTATAGTCTATATTGTGGAAAAACATGTGAAATAATCATGGTTATTTTTTTGGTTTTGAGTACCTCGATTCTAGAAGGCAACTCACAATGAGCAAGAAGTACAAATACCGTAGACACTCCAATAGCATGGACATCCTAACCGTCAACTTTAATTTATCTCGGTTTCTGGGAAATCCATAAAGAAGTAGCCAATTAACGAATCGTGTCTTATATTATAATCAAAATTTTGTCAGTTCATCACTTTTTAACATCTTCTACAGGAAACCATATAATTGGAAGATCACATGAGATTTCGAGAATTTCAAATGCTTTCCCAGCTCACAATTCACGGCATGGGAGCCGTGAATTGTGACTTAGTACAAGAAGCAGAGTGTTTTGCACTGAGTCTGCATACACGCAGGTCGCAGTTTTATTATTCCGACAATACTGTTTGTAGATGTGTTTTCAATTTGAAGAATCTTGAGTATAAATTTTTTGGTTTACCTGAAAAATCATGATTCGAATTAAAACCTCTTCGACAACCAGAAAAAATAATGCGGAATGAAAAATTTTTTTCTGATCAAAAAACTTTTTTTTTTCATTTTTCTGAATCAATAAAATTTT</canonical>
            <polymorphic>TGCATTTGAGTTTTCACATAGTCTGCAGGAAAAGTGACAATTGCATTCATACAACCGGTGGCTCCGCCCACTAAGATTCCAGATAGCATTTCTTTGGGAAATTGGTAGTAGATCCATTTAGGGAGTGTTCTTAAATTATTTGTTTAAAAAAAGTTATGGTTTGGATAATCTAGAACTTACTCTGTCACTGAGTGGCACTCAAAAATTCCAGACATTTCAAACAAGAATATTTTGAAAAGATTGAAGATCTTCAAATTTAGTCTTCTGTCTGCCGACCCGTACTTTTATACAGTTTTGCAAAACTATTTCAAAGCCAACAATACAGATCTCGCAGACATGTAAATTGTGGGAACACTGCAGAGTCTATGACCATTTCGAAAAAGATGATTTGGTTGACCTATAGTCTATATTGTGGAAAAACATGTGAAATAATCATGGTTATTTTTTTGGTTTTGAGTACCTCGATTCTAGAAGGCAACTCACAATGAGCAAGAAGTACRAATACCGTAGACACTCCAATAGCATGGACATCCTAACCGTCAACTTTAATTTATCTCGGTTTCTGGGAAATCCATAAAGAAGTAGCCAATTAACGAATCGTGTCTTATATTATAATCAAAATTTTGTCAGTTCATCACTTTTTAACATCTTCTACAGGAAACCATATAATTGGAAGATCACATGAGATTTCGAGAATTTCAAATGCTTTCCCAGCTCACAATTCACGGCATGGGAGCCGTGAATTGTGACTTAGTACAAGAAGCAGAGTGTTTTGCACTGAGTCTGCATACACGCAGGTCGCAGTTTTATTATTCCGACAATACTGTTTGTAGATGTGTTTTCAATTTGAAGAATCTTGAGTATAAATTTTTTGGTTTACCTGAAAAATCATGATTCGAATTAAAACCTCTTCGACAACCAGAAAAAATAATGCGGAATGAAAAATTTTTTTCTGATCAAAAAACTTTTTTTTTTCATTTTTCTGAATCAATAAAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>495 258 247</canonical_bands>
                <polymorphic_bands>753 247</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTTGAGTACCTCGATTCTA</pcr_primer_p1>
		<pcr_primer_p2>AATTGAAAACACATCTACAAACAG</pcr_primer_p2>
		<pcr_amplicon_size>399</pcr_amplicon_size>
		<canonical_amplicon>GGTTTTGAGTACCTCGATTCTAGAAGGCAACTCACAATGAGCAAGAAGTACAAATACCGTAGACACTCCAATAGCATGGACATCCTAACCGTCAACTTTAATTTATCTCGGTTTCTGGGAAATCCATAAAGAAGTAGCCAATTAACGAATCGTGTCTTATATTATAATCAAAATTTTGTCAGTTCATCACTTTTTAACATCTTCTACAGGAAACCATATAATTGGAAGATCACATGAGATTTCGAGAATTTCAAATGCTTTCCCAGCTCACAATTCACGGCATGGGAGCCGTGAATTGTGACTTAGTACAAGAAGCAGAGTGTTTTGCACTGAGTCTGCATACACGCAGGTCGCAGTTTTATTATTCCGACAATACTGTTTGTAGATGTGTTTTCAATT</canonical_amplicon>
		<polymorphic_amplicon>GGTTTTGAGTACCTCGATTCTAGAAGGCAACTCACAATGAGCAAGAAGTACRAATACCGTAGACACTCCAATAGCATGGACATCCTAACCGTCAACTTTAATTTATCTCGGTTTCTGGGAAATCCATAAAGAAGTAGCCAATTAACGAATCGTGTCTTATATTATAATCAAAATTTTGTCAGTTCATCACTTTTTAACATCTTCTACAGGAAACCATATAATTGGAAGATCACATGAGATTTCGAGAATTTCAAATGCTTTCCCAGCTCACAATTCACGGCATGGGAGCCGTGAATTGTGACTTAGTACAAGAAGCAGAGTGTTTTGCACTGAGTCTGCATACACGCAGGTCGCAGTTTTATTATTCCGACAATACTGTTTGTAGATGTGTTTTCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21026</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>615509</contig_pos>
        <strand></strand>
        <context>TGTGGGAACA[C/T]TGCAGAGTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTCAAAGCCAACAATACAGATCTCGCAGACATGTAAATTGTGGGAACA</left_flank>
        <right_flank>TGCAGAGTCTATGACCATTTCGAAAAAGATGATTTGGTTGACCTATAGTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATACCTGCACGACATTGCTGCACATTTTCCGCTTACAACAATAGGCAACCCCTTATAAAGCCCAGCAATTCCATGAGCTCTTATAGTTTCTCTAACACAATCAAATGGTCTGGAAAATCTACTACCATTCGACTTCCCAATTAATTGCATTTGAGTTTTCACATAGTCTGCAGGAAAAGTGACAATTGCATTCATACAACCGGTGGCTCCGCCCACTAAGATTCCAGATAGCATTTCTTTGGGAAATTGGTAGTAGATCCATTTAGGGAGTGTTCTTAAATTATTTGTTTAAAAAAAGTTATGGTTTGGATAATCTAGAACTTACTCTGTCACTGAGTGGCACTCAAAAATTCCAGACATTTCAAACAAGAATATTTTGAAAAGATTGAAGATCTTCAAATTTAGTCTTCTGTCTGCCGACCCGTACTTTTATACAGTTTTGCAAAACTATTTCAAAGCCAACAATACAGATCTCGCAGACATGTAAATTGTGGGAACACTGCAGAGTCTATGACCATTTCGAAAAAGATGATTTGGTTGACCTATAGTCTATATTGTGGAAAAACATGTGAAATAATCATGGTTATTTTTTTGGTTTTGAGTACCTCGATTCTAGAAGGCAACTCACAATGAGCAAGAAGTACAAATACCGTAGACACTCCAATAGCATGGACATCCTAACCGTCAACTTTAATTTATCTCGGTTTCTGGGAAATCCATAAAGAAGTAGCCAATTAACGAATCGTGTCTTATATTATAATCAAAATTTTGTCAGTTCATCACTTTTTAACATCTTCTACAGGAAACCATATAATTGGAAGATCACATGAGATTTCGAGAATTTCAAATGCTTTCCCAGCTCACAATTCACGGCATGGGAGCCGTGAATTGTGACTTAGTACAAGAAGCAGAGTGTTTTGCACTGAGTCTGCATACACGCAGGTCGCAGTTTTATTATTCCGACAATACTGTTTGTAGATGTGTTTTCAATTTGAAGAAT</canonical>
            <polymorphic>ATACCTGCACGACATTGCTGCACATTTTCCGCTTACAACAATAGGCAACCCCTTATAAAGCCCAGCAATTCCATGAGCTCTTATAGTTTCTCTAACACAATCAAATGGTCTGGAAAATCTACTACCATTCGACTTCCCAATTAATTGCATTTGAGTTTTCACATAGTCTGCAGGAAAAGTGACAATTGCATTCATACAACCGGTGGCTCCGCCCACTAAGATTCCAGATAGCATTTCTTTGGGAAATTGGTAGTAGATCCATTTAGGGAGTGTTCTTAAATTATTTGTTTAAAAAAAGTTATGGTTTGGATAATCTAGAACTTACTCTGTCACTGAGTGGCACTCAAAAATTCCAGACATTTCAAACAAGAATATTTTGAAAAGATTGAAGATCTTCAAATTTAGTCTTCTGTCTGCCGACCCGTACTTTTATACAGTTTTGCAAAACTATTTCAAAGCCAACAATACAGATCTCGCAGACATGTAAATTGTGGGAACAYTGCAGAGTCTATGACCATTTCGAAAAAGATGATTTGGTTGACCTATAGTCTATATTGTGGAAAAACATGTGAAATAATCATGGTTATTTTTTTGGTTTTGAGTACCTCGATTCTAGAAGGCAACTCACAATGAGCAAGAAGTACAAATACCGTAGACACTCCAATAGCATGGACATCCTAACCGTCAACTTTAATTTATCTCGGTTTCTGGGAAATCCATAAAGAAGTAGCCAATTAACGAATCGTGTCTTATATTATAATCAAAATTTTGTCAGTTCATCACTTTTTAACATCTTCTACAGGAAACCATATAATTGGAAGATCACATGAGATTTCGAGAATTTCAAATGCTTTCCCAGCTCACAATTCACGGCATGGGAGCCGTGAATTGTGACTTAGTACAAGAAGCAGAGTGTTTTGCACTGAGTCTGCATACACGCAGGTCGCAGTTTTATTATTCCGACAATACTGTTTGTAGATGTGTTTTCAATTTGAAGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>332 254 203 168 43</canonical_bands>
                <polymorphic_bands>375 254 203 168</polymorphic_bands>
            </assay>
            <assay>
                <site>CTGCAG</site>
                <isoschizomers>
                    <enzyme>BloHII</enzyme>
                    <enzyme>BstMAI</enzyme>
                    <enzyme>PstI</enzyme>
                </isoschizomers>
                <canonical_bands>496 332 172</canonical_bands>
                <polymorphic_bands>828 172</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>151 89 75 64 60 60 57 56 46 43 38 35 31 24 22 20 17 16 15 13 12 10 9 7 7 7 7 6 3</canonical_bands>
                <polymorphic_bands>151 89 75 66 64 60 57 56 46 43 38 35 31 24 22 20 17 16 15 13 12 10 9 7 7 7 7 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTCAAATTTAGTCTTCTGTCTG</pcr_primer_p1>
		<pcr_primer_p2>GTACTTCTTGCTCATTGTGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCTTCAAATTTAGTCTTCTGTCTGCCGACCCGTACTTTTATACAGTTTTGCAAAACTATTTCAAAGCCAACAATACAGATCTCGCAGACATGTAAATTGTGGGAACACTGCAGAGTCTATGACCATTTCGAAAAAGATGATTTGGTTGACCTATAGTCTATATTGTGGAAAAACATGTGAAATAATCATGGTTATTTTTTTGGTTTTGAGTACCTCGATTCTAGAAGGCAACTCACAATGAGCAAGAAGTAC</canonical_amplicon>
		<polymorphic_amplicon>TCTTCAAATTTAGTCTTCTGTCTGCCGACCCGTACTTTTATACAGTTTTGCAAAACTATTTCAAAGCCAACAATACAGATCTCGCAGACATGTAAATTGTGGGAACAYTGCAGAGTCTATGACCATTTCGAAAAAGATGATTTGGTTGACCTATAGTCTATATTGTGGAAAAACATGTGAAATAATCATGGTTATTTTTTTGGTTTTGAGTACCTCGATTCTAGAAGGCAACTCACAATGAGCAAGAAGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21027</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>615355</contig_pos>
        <strand></strand>
        <context>AGTGGCACTC[A/G]AAAATTCCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTTATGGTTTGGATAATCTAGAACTTACTCTGTCACTGAGTGGCACTC</left_flank>
        <right_flank>AAAATTCCAGACATTTCAAACAAGAATATTTTGAAAAGATTGAAGATCTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGCTTCAGCTAAGCCGGCGGCCAGTCCACAGAGAACTTTTTGAGAGTGAGATAATGCTCCATTTTCATCAGATATCTGACTTTTCAGAAGTTCAGAAGTCCCGAACCTGAAAATGAATTATTTTATATTTCAGCTTACTGTAATGTGTTTTAATACCTGCACGACATTGCTGCACATTTTCCGCTTACAACAATAGGCAACCCCTTATAAAGCCCAGCAATTCCATGAGCTCTTATAGTTTCTCTAACACAATCAAATGGTCTGGAAAATCTACTACCATTCGACTTCCCAATTAATTGCATTTGAGTTTTCACATAGTCTGCAGGAAAAGTGACAATTGCATTCATACAACCGGTGGCTCCGCCCACTAAGATTCCAGATAGCATTTCTTTGGGAAATTGGTAGTAGATCCATTTAGGGAGTGTTCTTAAATTATTTGTTTAAAAAAAGTTATGGTTTGGATAATCTAGAACTTACTCTGTCACTGAGTGGCACTCAAAAATTCCAGACATTTCAAACAAGAATATTTTGAAAAGATTGAAGATCTTCAAATTTAGTCTTCTGTCTGCCGACCCGTACTTTTATACAGTTTTGCAAAACTATTTCAAAGCCAACAATACAGATCTCGCAGACATGTAAATTGTGGGAACACTGCAGAGTCTATGACCATTTCGAAAAAGATGATTTGGTTGACCTATAGTCTATATTGTGGAAAAACATGTGAAATAATCATGGTTATTTTTTTGGTTTTGAGTACCTCGATTCTAGAAGGCAACTCACAATGAGCAAGAAGTACAAATACCGTAGACACTCCAATAGCATGGACATCCTAACCGTCAACTTTAATTTATCTCGGTTTCTGGGAAATCCATAAAGAAGTAGCCAATTAACGAATCGTGTCTTATATTATAATCAAAATTTTGTCAGTTCATCACTTTTTAACATCTTCTACAGGAAACCATATAATTGGAAGATCACATGAGATTTCGAGAATTTCA</canonical>
            <polymorphic>ACTGCTTCAGCTAAGCCGGCGGCCAGTCCACAGAGAACTTTTTGAGAGTGAGATAATGCTCCATTTTCATCAGATATCTGACTTTTCAGAAGTTCAGAAGTCCCGAACCTGAAAATGAATTATTTTATATTTCAGCTTACTGTAATGTGTTTTAATACCTGCACGACATTGCTGCACATTTTCCGCTTACAACAATAGGCAACCCCTTATAAAGCCCAGCAATTCCATGAGCTCTTATAGTTTCTCTAACACAATCAAATGGTCTGGAAAATCTACTACCATTCGACTTCCCAATTAATTGCATTTGAGTTTTCACATAGTCTGCAGGAAAAGTGACAATTGCATTCATACAACCGGTGGCTCCGCCCACTAAGATTCCAGATAGCATTTCTTTGGGAAATTGGTAGTAGATCCATTTAGGGAGTGTTCTTAAATTATTTGTTTAAAAAAAGTTATGGTTTGGATAATCTAGAACTTACTCTGTCACTGAGTGGCACTCRAAAATTCCAGACATTTCAAACAAGAATATTTTGAAAAGATTGAAGATCTTCAAATTTAGTCTTCTGTCTGCCGACCCGTACTTTTATACAGTTTTGCAAAACTATTTCAAAGCCAACAATACAGATCTCGCAGACATGTAAATTGTGGGAACACTGCAGAGTCTATGACCATTTCGAAAAAGATGATTTGGTTGACCTATAGTCTATATTGTGGAAAAACATGTGAAATAATCATGGTTATTTTTTTGGTTTTGAGTACCTCGATTCTAGAAGGCAACTCACAATGAGCAAGAAGTACAAATACCGTAGACACTCCAATAGCATGGACATCCTAACCGTCAACTTTAATTTATCTCGGTTTCTGGGAAATCCATAAAGAAGTAGCCAATTAACGAATCGTGTCTTATATTATAATCAAAATTTTGTCAGTTCATCACTTTTTAACATCTTCTACAGGAAACCATATAATTGGAAGATCACATGAGATTTCGAGAATTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGATTCCAGATAGCATTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTGGCTTTGAAATAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGATTCCAGATAGCATTTCTTTGGGAAATTGGTAGTAGATCCATTTAGGGAGTGTTCTTAAATTATTTGTTTAAAAAAAGTTATGGTTTGGATAATCTAGAACTTACTCTGTCACTGAGTGGCACTCAAAAATTCCAGACATTTCAAACAAGAATATTTTGAAAAGATTGAAGATCTTCAAATTTAGTCTTCTGTCTGCCGACCCGTACTTTTATACAGTTTTGCAAAACTATTTCAAAGCCAACAAT</canonical_amplicon>
		<polymorphic_amplicon>AAGATTCCAGATAGCATTTCTTTGGGAAATTGGTAGTAGATCCATTTAGGGAGTGTTCTTAAATTATTTGTTTAAAAAAAGTTATGGTTTGGATAATCTAGAACTTACTCTGTCACTGAGTGGCACTCRAAAATTCCAGACATTTCAAACAAGAATATTTTGAAAAGATTGAAGATCTTCAAATTTAGTCTTCTGTCTGCCGACCCGTACTTTTATACAGTTTTGCAAAACTATTTCAAAGCCAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21028</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>615306</contig_pos>
        <strand></strand>
        <context>GTTTAAAAAA[A/T]GTTATGGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGGTAGTAGATCCATTTAGGGAGTGTTCTTAAATTATTTGTTTAAAAAA</left_flank>
        <right_flank>GTTATGGTTTGGATAATCTAGAACTTACTCTGTCACTGAGTGGCACTCAA</right_flank>
        <qual_score>35</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTTGAATGAATTTCACTTTTAGAGTCTCGAATGGAGTGACGACAAAAACTGCTTCAGCTAAGCCGGCGGCCAGTCCACAGAGAACTTTTTGAGAGTGAGATAATGCTCCATTTTCATCAGATATCTGACTTTTCAGAAGTTCAGAAGTCCCGAACCTGAAAATGAATTATTTTATATTTCAGCTTACTGTAATGTGTTTTAATACCTGCACGACATTGCTGCACATTTTCCGCTTACAACAATAGGCAACCCCTTATAAAGCCCAGCAATTCCATGAGCTCTTATAGTTTCTCTAACACAATCAAATGGTCTGGAAAATCTACTACCATTCGACTTCCCAATTAATTGCATTTGAGTTTTCACATAGTCTGCAGGAAAAGTGACAATTGCATTCATACAACCGGTGGCTCCGCCCACTAAGATTCCAGATAGCATTTCTTTGGGAAATTGGTAGTAGATCCATTTAGGGAGTGTTCTTAAATTATTTGTTTAAAAAAAGTTATGGTTTGGATAATCTAGAACTTACTCTGTCACTGAGTGGCACTCAAAAATTCCAGACATTTCAAACAAGAATATTTTGAAAAGATTGAAGATCTTCAAATTTAGTCTTCTGTCTGCCGACCCGTACTTTTATACAGTTTTGCAAAACTATTTCAAAGCCAACAATACAGATCTCGCAGACATGTAAATTGTGGGAACACTGCAGAGTCTATGACCATTTCGAAAAAGATGATTTGGTTGACCTATAGTCTATATTGTGGAAAAACATGTGAAATAATCATGGTTATTTTTTTGGTTTTGAGTACCTCGATTCTAGAAGGCAACTCACAATGAGCAAGAAGTACAAATACCGTAGACACTCCAATAGCATGGACATCCTAACCGTCAACTTTAATTTATCTCGGTTTCTGGGAAATCCATAAAGAAGTAGCCAATTAACGAATCGTGTCTTATATTATAATCAAAATTTTGTCAGTTCATCACTTTTTAACATCTTC</canonical>
            <polymorphic>GTCTTGAATGAATTTCACTTTTAGAGTCTCGAATGGAGTGACGACAAAAACTGCTTCAGCTAAGCCGGCGGCCAGTCCACAGAGAACTTTTTGAGAGTGAGATAATGCTCCATTTTCATCAGATATCTGACTTTTCAGAAGTTCAGAAGTCCCGAACCTGAAAATGAATTATTTTATATTTCAGCTTACTGTAATGTGTTTTAATACCTGCACGACATTGCTGCACATTTTCCGCTTACAACAATAGGCAACCCCTTATAAAGCCCAGCAATTCCATGAGCTCTTATAGTTTCTCTAACACAATCAAATGGTCTGGAAAATCTACTACCATTCGACTTCCCAATTAATTGCATTTGAGTTTTCACATAGTCTGCAGGAAAAGTGACAATTGCATTCATACAACCGGTGGCTCCGCCCACTAAGATTCCAGATAGCATTTCTTTGGGAAATTGGTAGTAGATCCATTTAGGGAGTGTTCTTAAATTATTTGTTTAAAAAAWGTTATGGTTTGGATAATCTAGAACTTACTCTGTCACTGAGTGGCACTCAAAAATTCCAGACATTTCAAACAAGAATATTTTGAAAAGATTGAAGATCTTCAAATTTAGTCTTCTGTCTGCCGACCCGTACTTTTATACAGTTTTGCAAAACTATTTCAAAGCCAACAATACAGATCTCGCAGACATGTAAATTGTGGGAACACTGCAGAGTCTATGACCATTTCGAAAAAGATGATTTGGTTGACCTATAGTCTATATTGTGGAAAAACATGTGAAATAATCATGGTTATTTTTTTGGTTTTGAGTACCTCGATTCTAGAAGGCAACTCACAATGAGCAAGAAGTACAAATACCGTAGACACTCCAATAGCATGGACATCCTAACCGTCAACTTTAATTTATCTCGGTTTCTGGGAAATCCATAAAGAAGTAGCCAATTAACGAATCGTGTCTTATATTATAATCAAAATTTTGTCAGTTCATCACTTTTTAACATCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGATTCCAGATAGCATTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTGGCTTTGAAATAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGATTCCAGATAGCATTTCTTTGGGAAATTGGTAGTAGATCCATTTAGGGAGTGTTCTTAAATTATTTGTTTAAAAAAAGTTATGGTTTGGATAATCTAGAACTTACTCTGTCACTGAGTGGCACTCAAAAATTCCAGACATTTCAAACAAGAATATTTTGAAAAGATTGAAGATCTTCAAATTTAGTCTTCTGTCTGCCGACCCGTACTTTTATACAGTTTTGCAAAACTATTTCAAAGCCAACAAT</canonical_amplicon>
		<polymorphic_amplicon>AAGATTCCAGATAGCATTTCTTTGGGAAATTGGTAGTAGATCCATTTAGGGAGTGTTCTTAAATTATTTGTTTAAAAAAWGTTATGGTTTGGATAATCTAGAACTTACTCTGTCACTGAGTGGCACTCAAAAATTCCAGACATTTCAAACAAGAATATTTTGAAAAGATTGAAGATCTTCAAATTTAGTCTTCTGTCTGCCGACCCGTACTTTTATACAGTTTTGCAAAACTATTTCAAAGCCAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21029</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>712187</contig_pos>
        <strand>+</strand>
        <context>TAGCTCTTGA[A/G]TTCCGCCGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATTTGACATTGATTTCGAAAATTCTCCTGCTCCGAATTAGCTCTTGA</left_flank>
        <right_flank>TTCCGCCGTCTGATTACACCTGTAAAGTTTTGTTATTCTTTTTTCAAGTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCATTTGGTAGTTATTCAAAGCAATGTAACCACTTTTTCGCCGTCGTATGATTTCATGTCTCTTCATAGTTTGTCGGGGGACCCTCTTCTTTGATCGTTACTGTGCGTAGCGTGCCGCGTCGCGGTCGTCCTCGGCCTGCAGTGCACACATCGTTGGAAGTCTGAATTAAAATGTGAAAATAAGAAAAAATGTTGTATTCAGATAAAATAAAATTTAATTTACTAACAAAAAAAGTCATATCAGATAAGTTTATATTTCCAGCACATTAAAAAAAAACAATGACCGGTGAAAATGATTGAAATCGGACAAAATTCCACCAAAAAGTCTTCTGTTTCATTTCAGAACCGCCACCGTGTGCAATGATGACTATGACTATTGGATGAGTCTTCCGATCCGTTAAATGATTCGCGCTATCTGCCGTACTGCGCACTTTTGTCACCAATTGAAAAAATTTGACATTGATTTCGAAAATTCTCCTGCTCCGAATTAGCTCTTGAGTTCCGCCGTCTGATTACACCTGTAAAGTTTTGTTATTCTTTTTTCAAGTATTAATTGTTTGTAACTTACCAAATATAAAATGAAACCAACCGAATTCGAGCTAAACTGATGTTGCGTTTTGACAAATTCGTCGGATGAGACTAAGTTGGTCGCTTGATGTGTGCAATTCCATGAAAAAGTCTTCTATTTCATGTTTGAACCGCCACCGGAGCATCCGAATCGACTGACTCCATTTTTCCTGTTTTCAAGAGTTGAGATGGTCTTCGGGGGGAATTCCGCATTATTGATCAATATCATATCTACTGGATACTATTTTTCACAATCATGATTGGTTCTTTGCTTTTTGTCTTCCAGAGTAGAGATGGCCGACGTTGGAATCTGAATGAAACTTATGGCGGAGAGTATCATTAGATTTTTTATCCGGACTAACCGTCAAACAATACTTCATGAAGAGCGAATGGTGTAATTAGTATAATTTTTTATCATCAGCCCGCTCACCA</canonical>
            <polymorphic>GTCATTTGGTAGTTATTCAAAGCAATGTAACCACTTTTTCGCCGTCGTATGATTTCATGTCTCTTCATAGTTTGTCGGGGGACCCTCTTCTTTGATCGTTACTGTGCGTAGCGTGCCGCGTCGCGGTCGTCCTCGGCCTGCAGTGCACACATCGTTGGAAGTCTGAATTAAAATGTGAAAATAAGAAAAAATGTTGTATTCAGATAAAATAAAATTTAATTTACTAACAAAAAAAGTCATATCAGATAAGTTTATATTTCCAGCACATTAAAAAAAAACAATGACCGGTGAAAATGATTGAAATCGGACAAAATTCCACCAAAAAGTCTTCTGTTTCATTTCAGAACCGCCACCGTGTGCAATGATGACTATGACTATTGGATGAGTCTTCCGATCCGTTAAATGATTCGCGCTATCTGCCGTACTGCGCACTTTTGTCACCAATTGAAAAAATTTGACATTGATTTCGAAAATTCTCCTGCTCCGAATTAGCTCTTGARTTCCGCCGTCTGATTACACCTGTAAAGTTTTGTTATTCTTTTTTCAAGTATTAATTGTTTGTAACTTACCAAATATAAAATGAAACCAACCGAATTCGAGCTAAACTGATGTTGCGTTTTGACAAATTCGTCGGATGAGACTAAGTTGGTCGCTTGATGTGTGCAATTCCATGAAAAAGTCTTCTATTTCATGTTTGAACCGCCACCGGAGCATCCGAATCGACTGACTCCATTTTTCCTGTTTTCAAGAGTTGAGATGGTCTTCGGGGGGAATTCCGCATTATTGATCAATATCATATCTACTGGATACTATTTTTCACAATCATGATTGGTTCTTTGCTTTTTGTCTTCCAGAGTAGAGATGGCCGACGTTGGAATCTGAATGAAACTTATGGCGGAGAGTATCATTAGATTTTTTATCCGGACTAACCGTCAAACAATACTTCATGAAGAGCGAATGGTGTAATTAGTATAATTTTTTATCATCAGCCCGCTCACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGTGCAATGATGACTATGACTA</pcr_primer_p1>
		<pcr_primer_p2>TCGGTTGGTTTCATTTTATATT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GTGTGCAATGATGACTATGACTATTGGATGAGTCTTCCGATCCGTTAAATGATTCGCGCTATCTGCCGTACTGCGCACTTTTGTCACCAATTGAAAAAATTTGACATTGATTTCGAAAATTCTCCTGCTCCGAATTAGCTCTTGAGTTCCGCCGTCTGATTACACCTGTAAAGTTTTGTTATTCTTTTTTCAAGTATTAATTGTTTGTAACTTACCAAATATAAAATGAAACCAACCGA</canonical_amplicon>
		<polymorphic_amplicon>GTGTGCAATGATGACTATGACTATTGGATGAGTCTTCCGATCCGTTAAATGATTCGCGCTATCTGCCGTACTGCGCACTTTTGTCACCAATTGAAAAAATTTGACATTGATTTCGAAAATTCTCCTGCTCCGAATTAGCTCTTGARTTCCGCCGTCTGATTACACCTGTAAAGTTTTGTTATTCTTTTTTCAAGTATTAATTGTTTGTAACTTACCAAATATAAAATGAAACCAACCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21030</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>737554</contig_pos>
        <strand></strand>
        <context>ACTAAACATG[T/C]CCATACCTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCCAGAAAACTTTTTTTTGTTTTTTCATGAATATTTTCTCACTAAACATG</left_flank>
        <right_flank>CCATACCTGATAATCTCAGTAAGTATTGATTTTCGCAGTTTTTGGGAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCATTGAAACAGCGCATTACCAGAACTCCATATTCTATATTCAGTTTATCTTCGGTGAGTTTTTCATTTAGAATCATGAGTTATTGTCTTTATAATTTTTCTGGGACATGTTTTGAAATGGATATAATGTAAAAAACGATGTATGACCCAAATATAAACCTTAGACAGAAAAACAAACTACACTCTATAAGGTCTAATATAAAGTCATATTCCAGGAGTTCTGATTGTTTTGAAAATATCAATGAGGATTTTGCCAGATTAAGAAATAAAAAAAGTAACATGGAAAAAAAGAAATTCTTAAAATTCAGAAATTTGAAAAATAAATGTTTACAGTAGCTCTAGTTCCTTTCACTAGCATTTTGAAGAGTTAGTACGGTAATTCCGTAGCTTCTCATAAGTTTTTTGAACAAATAAGACACTGAAAACGCTATGGAAAAAATGTGAAAGTTTCCAGAAAACTTTTTTTTGTTTTTTCATGAATATTTTCTCACTAAACATGTCCATACCTGATAATCTCAGTAAGTATTGATTTTCGCAGTTTTTGGGAAAAATATACAGTACCGGGCAACAAGATACACAAAACCGTGGTTTCTGTTGTTGACAATTTTTAGAGGTCTGGAGCGCGGCTATCAAGTGTCCGATAACTTTGAAAATGTTGGAGAGTGTGAAACAGGTCTTGATTGAGAACTTTGTATTTAGAGATTTTTTCGAAAGTTACTAGTTTTTTAGCTTTTTGCAATTTTTGGAATACACCTGTTTTTCTCGTTTTCAGTACAGAACGAACTAATTATATGATTCCGGTTACCAAATTGATATTATCGGGATAATAAAAAATATTGATTACAATTCTTCTTTTAGATTTTCAAAATACTGTTGCTTCAAAAAATTAAAGCTTGTTTTTGGGGTGGCTTTATGATGTTAGGCTTAAAATGTTGCTGACCAATGTTGCTCTAGGTTCTCTCATCATTAATTAGAAGAGTAATTAGAAGAGTTTTTGTAG</canonical>
            <polymorphic>GCATTGAAACAGCGCATTACCAGAACTCCATATTCTATATTCAGTTTATCTTCGGTGAGTTTTTCATTTAGAATCATGAGTTATTGTCTTTATAATTTTTCTGGGACATGTTTTGAAATGGATATAATGTAAAAAACGATGTATGACCCAAATATAAACCTTAGACAGAAAAACAAACTACACTCTATAAGGTCTAATATAAAGTCATATTCCAGGAGTTCTGATTGTTTTGAAAATATCAATGAGGATTTTGCCAGATTAAGAAATAAAAAAAGTAACATGGAAAAAAAGAAATTCTTAAAATTCAGAAATTTGAAAAATAAATGTTTACAGTAGCTCTAGTTCCTTTCACTAGCATTTTGAAGAGTTAGTACGGTAATTCCGTAGCTTCTCATAAGTTTTTTGAACAAATAAGACACTGAAAACGCTATGGAAAAAATGTGAAAGTTTCCAGAAAACTTTTTTTTGTTTTTTCATGAATATTTTCTCACTAAACATGYCCATACCTGATAATCTCAGTAAGTATTGATTTTCGCAGTTTTTGGGAAAAATATACAGTACCGGGCAACAAGATACACAAAACCGTGGTTTCTGTTGTTGACAATTTTTAGAGGTCTGGAGCGCGGCTATCAAGTGTCCGATAACTTTGAAAATGTTGGAGAGTGTGAAACAGGTCTTGATTGAGAACTTTGTATTTAGAGATTTTTTCGAAAGTTACTAGTTTTTTAGCTTTTTGCAATTTTTGGAATACACCTGTTTTTCTCGTTTTCAGTACAGAACGAACTAATTATATGATTCCGGTTACCAAATTGATATTATCGGGATAATAAAAAATATTGATTACAATTCTTCTTTTAGATTTTCAAAATACTGTTGCTTCAAAAAATTAAAGCTTGTTTTTGGGGTGGCTTTATGATGTTAGGCTTAAAATGTTGCTGACCAATGTTGCTCTAGGTTCTCTCATCATTAATTAGAAGAGTAATTAGAAGAGTTTTTGTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 389 106</canonical_bands>
                <polymorphic_bands>894 106</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>505 389 106</canonical_bands>
                <polymorphic_bands>894 106</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>501 389 110</canonical_bands>
                <polymorphic_bands>890 110</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAAAACGCTATGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACATTGGTCAGCAACATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>528</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAACGCTATGGAAAAAATGTGAAAGTTTCCAGAAAACTTTTTTTTGTTTTTTCATGAATATTTTCTCACTAAACATGTCCATACCTGATAATCTCAGTAAGTATTGATTTTCGCAGTTTTTGGGAAAAATATACAGTACCGGGCAACAAGATACACAAAACCGTGGTTTCTGTTGTTGACAATTTTTAGAGGTCTGGAGCGCGGCTATCAAGTGTCCGATAACTTTGAAAATGTTGGAGAGTGTGAAACAGGTCTTGATTGAGAACTTTGTATTTAGAGATTTTTTCGAAAGTTACTAGTTTTTTAGCTTTTTGCAATTTTTGGAATACACCTGTTTTTCTCGTTTTCAGTACAGAACGAACTAATTATATGATTCCGGTTACCAAATTGATATTATCGGGATAATAAAAAATATTGATTACAATTCTTCTTTTAGATTTTCAAAATACTGTTGCTTCAAAAAATTAAAGCTTGTTTTTGGGGTGGCTTTATGATGTTAGGCTTAAAATGTTGCTGACCAATGT</canonical_amplicon>
		<polymorphic_amplicon>CTGAAAACGCTATGGAAAAAATGTGAAAGTTTCCAGAAAACTTTTTTTTGTTTTTTCATGAATATTTTCTCACTAAACATGYCCATACCTGATAATCTCAGTAAGTATTGATTTTCGCAGTTTTTGGGAAAAATATACAGTACCGGGCAACAAGATACACAAAACCGTGGTTTCTGTTGTTGACAATTTTTAGAGGTCTGGAGCGCGGCTATCAAGTGTCCGATAACTTTGAAAATGTTGGAGAGTGTGAAACAGGTCTTGATTGAGAACTTTGTATTTAGAGATTTTTTCGAAAGTTACTAGTTTTTTAGCTTTTTGCAATTTTTGGAATACACCTGTTTTTCTCGTTTTCAGTACAGAACGAACTAATTATATGATTCCGGTTACCAAATTGATATTATCGGGATAATAAAAAATATTGATTACAATTCTTCTTTTAGATTTTCAAAATACTGTTGCTTCAAAAAATTAAAGCTTGTTTTTGGGGTGGCTTTATGATGTTAGGCTTAAAATGTTGCTGACCAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21031</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>757900</contig_pos>
        <strand>+</strand>
        <context>CACCTCACCA[C/T]AAGATAACCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTTCTGAACCTTGTTCTTCTCACCTTGCCAATCATTCGCACCTCACCA</left_flank>
        <right_flank>AAGATAACCACCATTTGCTTTATTACTTAGCAGCATTTCATTTGTTTTCC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTCTTGATTGCCGTTTCACATCTTCTTTAAACTTTTTATCACCCCCTGTCAATCAACATGACGCTTCTTAACAAGGGCGGAATGCAAACGCTTTGTTTAATTGCTTTTTTTTGACCACCTGCTGTGAAAGAGTATATTACGTAGATATCAGTAAAGAGAGGGTTGAAAAATTCTAGTTGGCCTAATCAGATCTTCCTAATAGAAACCAATACTCAAGTTTCCTCGTATAATCATATCTATATTTTCTATATTTTTGGTCAGTGTTAGAAGCCTAGAAATTCTAGAAACGTCCTACATTCACTGATTTTTATTCTTTCAGTTTTAATACAAATAATTTTTAAATGTAAAGAAATCATAAACTTTACTGAGATGACCTGAATGGGAAGTCAGCTTTAGAAAATTTTTATCCAATCGTTTTCATTTGAAAAAAGTTCATATCACACACATTTCTTCTGAACCTTGTTCTTCTCACCTTGCCAATCATTCGCACCTCACCATAAGATAACCACCATTTGCTTTATTACTTAGCAGCATTTCATTTGTTTTCCATATTTCTTCTTTCTCCGTTCTCTGTCCTTTTTTCCATGGGGTCGTTTTCACGGAACCTATTAGTTATAATACTTATATTTTCACGTGATTCATTATATTTTTTCATTTGATCAAAGTTCATTTCCTCGAACTGTGGGAATAATATAAAAATTATGGTCGCTGGCACGTGGGGACCGAAAAAGGGGTTGCTATTTTTGAGAAATTTTTTTAGTAAATGAGAAAGCGTCAAAAAGCGATAACTCGGAGAAGCAAAATGCAAAGTTCCTAAATTGAATATACGATACTTACATACCGTAAACCTCTAATACCGTAAACCTGTAATCGAAAAATTCGTCGATTGTTTAATTTAACGAAAATCTCGGTTTCTGTCGAGGATATCCAACAGTAGTGAACTGACAATTTTTTTGTCATACTAGGATAAACATTTTATCAGTTGACACATTTTCGAT</canonical>
            <polymorphic>GTCTCTTGATTGCCGTTTCACATCTTCTTTAAACTTTTTATCACCCCCTGTCAATCAACATGACGCTTCTTAACAAGGGCGGAATGCAAACGCTTTGTTTAATTGCTTTTTTTTGACCACCTGCTGTGAAAGAGTATATTACGTAGATATCAGTAAAGAGAGGGTTGAAAAATTCTAGTTGGCCTAATCAGATCTTCCTAATAGAAACCAATACTCAAGTTTCCTCGTATAATCATATCTATATTTTCTATATTTTTGGTCAGTGTTAGAAGCCTAGAAATTCTAGAAACGTCCTACATTCACTGATTTTTATTCTTTCAGTTTTAATACAAATAATTTTTAAATGTAAAGAAATCATAAACTTTACTGAGATGACCTGAATGGGAAGTCAGCTTTAGAAAATTTTTATCCAATCGTTTTCATTTGAAAAAAGTTCATATCACACACATTTCTTCTGAACCTTGTTCTTCTCACCTTGCCAATCATTCGCACCTCACCAYAAGATAACCACCATTTGCTTTATTACTTAGCAGCATTTCATTTGTTTTCCATATTTCTTCTTTCTCCGTTCTCTGTCCTTTTTTCCATGGGGTCGTTTTCACGGAACCTATTAGTTATAATACTTATATTTTCACGTGATTCATTATATTTTTTCATTTGATCAAAGTTCATTTCCTCGAACTGTGGGAATAATATAAAAATTATGGTCGCTGGCACGTGGGGACCGAAAAAGGGGTTGCTATTTTTGAGAAATTTTTTTAGTAAATGAGAAAGCGTCAAAAAGCGATAACTCGGAGAAGCAAAATGCAAAGTTCCTAAATTGAATATACGATACTTACATACCGTAAACCTCTAATACCGTAAACCTGTAATCGAAAAATTCGTCGATTGTTTAATTTAACGAAAATCTCGGTTTCTGTCGAGGATATCCAACAGTAGTGAACTGACAATTTTTTTGTCATACTAGGATAAACATTTTATCAGTTGACACATTTTCGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATATCACACACATTTCTTCTG</pcr_primer_p1>
		<pcr_primer_p2>ACAGTTCGAGGAAATGAACTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCATATCACACACATTTCTTCTGAACCTTGTTCTTCTCACCTTGCCAATCATTCGCACCTCACCATAAGATAACCACCATTTGCTTTATTACTTAGCAGCATTTCATTTGTTTTCCATATTTCTTCTTTCTCCGTTCTCTGTCCTTTTTTCCATGGGGTCGTTTTCACGGAACCTATTAGTTATAATACTTATATTTTCACGTGATTCATTATATTTTTTCATTTGATCAAAGTTCATTTCCTCGAACTGT</canonical_amplicon>
		<polymorphic_amplicon>TCATATCACACACATTTCTTCTGAACCTTGTTCTTCTCACCTTGCCAATCATTCGCACCTCACCAYAAGATAACCACCATTTGCTTTATTACTTAGCAGCATTTCATTTGTTTTCCATATTTCTTCTTTCTCCGTTCTCTGTCCTTTTTTCCATGGGGTCGTTTTCACGGAACCTATTAGTTATAATACTTATATTTTCACGTGATTCATTATATTTTTTCATTTGATCAAAGTTCATTTCCTCGAACTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21040</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>801653</contig_pos>
        <strand>+</strand>
        <context>ACTTTTGAAC[A/G]TTTTCAATTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGCCCGAATAATACGATAGTTCTTAACCTTTTGTCAGAAACTTTTGAAC</left_flank>
        <right_flank>TTTTCAATTATTCTTAGCTGTTTTTAATCAATGAACGTTTTTGATAGGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGGAAGAAGAAAAAAGGGTCAACTAGGACCCTCTCTTTCTCTGCGCCTCCTCCATTCTCCTTCTCTCTCCCTCTCCTCTCTTTGTTTCTGTGTGTGCGAGAGGGGGAAGACTGGGTGTTCGCGGGCCCGGGACCCGTTTGAAAGGACGGGGTGTGTGTAGATAGATAATTTTTCGCGGGTAAATTTTTGAATGGTAATGTTTTTAGAAAACGTATTTTTTTTATTTTCGAGCAATTCTGGCAAAAATAACAAGATAAAATGTTTGGGTTGAGTAGAGAAATAATTGAAAATGCAATACTTTAAACGAAAACTATTATGACAATTGAGTTTCATATTTTTGAGCCTGTTTTGAATATTATTCACTTATTTTGGAAAATCTACGACAAATAAAAAAACTATAAAAATGGTCGAAAATCTGAAAAAAAATAGGAACTTATCATCTAAAATGAGCCCGAATAATACGATAGTTCTTAACCTTTTGTCAGAAACTTTTGAACGTTTTCAATTATTCTTAGCTGTTTTTAATCAATGAACGTTTTTGATAGGAAGAGTTTGTTTCAGCGAAAGATTGAAAATTGAACATTTCGAAATTTTGAAAAAATGTAATCAAATTCTCAAAATTTTACTTTTGAAGTATATTTTTACTTACGATAAGAAAAAGTGGTGTCACTTTTTTTTTAACTTCCTGCGTTTCTTATCTCTCAAAAAGCACCTGGTCGATACAGTGCAAAATGAACAGAACAGGTGAACATTTGATTAGATTTTGGCTAGAACAAAAGTCAATCAGGGGAATTTTAACCCTACATTTTTGAGAAATATGTGAGCAATCGGAAAATGTTCTCTCAAAGAGCATTTAGTTAAAAATTAAGTTTTTAATTAGTCAAAACAGTAAGCACTGTCTCATTGGACCAGTTTCGCTCAAGTAAATTACTGTGGATAACAAAGATTGTTTTACATATTCAAATTTTTATGTCACTAACAAATCAGTTATTCGGAAA</canonical>
            <polymorphic>TTGGGAAGAAGAAAAAAGGGTCAACTAGGACCCTCTCTTTCTCTGCGCCTCCTCCATTCTCCTTCTCTCTCCCTCTCCTCTCTTTGTTTCTGTGTGTGCGAGAGGGGGAAGACTGGGTGTTCGCGGGCCCGGGACCCGTTTGAAAGGACGGGGTGTGTGTAGATAGATAATTTTTCGCGGGTAAATTTTTGAATGGTAATGTTTTTAGAAAACGTATTTTTTTTATTTTCGAGCAATTCTGGCAAAAATAACAAGATAAAATGTTTGGGTTGAGTAGAGAAATAATTGAAAATGCAATACTTTAAACGAAAACTATTATGACAATTGAGTTTCATATTTTTGAGCCTGTTTTGAATATTATTCACTTATTTTGGAAAATCTACGACAAATAAAAAAACTATAAAAATGGTCGAAAATCTGAAAAAAAATAGGAACTTATCATCTAAAATGAGCCCGAATAATACGATAGTTCTTAACCTTTTGTCAGAAACTTTTGAACRTTTTCAATTATTCTTAGCTGTTTTTAATCAATGAACGTTTTTGATAGGAAGAGTTTGTTTCAGCGAAAGATTGAAAATTGAACATTTCGAAATTTTGAAAAAATGTAATCAAATTCTCAAAATTTTACTTTTGAAGTATATTTTTACTTACGATAAGAAAAAGTGGTGTCACTTTTTTTTTAACTTCCTGCGTTTCTTATCTCTCAAAAAGCACCTGGTCGATACAGTGCAAAATGAACAGAACAGGTGAACATTTGATTAGATTTTGGCTAGAACAAAAGTCAATCAGGGGAATTTTAACCCTACATTTTTGAGAAATATGTGAGCAATCGGAAAATGTTCTCTCAAAGAGCATTTAGTTAAAAATTAAGTTTTTAATTAGTCAAAACAGTAAGCACTGTCTCATTGGACCAGTTTCGCTCAAGTAAATTACTGTGGATAACAAAGATTGTTTTACATATTCAAATTTTTATGTCACTAACAAATCAGTTATTCGGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>498 465 37</canonical_bands>
                <polymorphic_bands>535 465</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>465 286 212 37</canonical_bands>
                <polymorphic_bands>465 323 212</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGACAATTGAGTTTCATATTTTTG</pcr_primer_p1>
		<pcr_primer_p2>CTGAAACAAACTCTTCCTATCAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TGACAATTGAGTTTCATATTTTTGAGCCTGTTTTGAATATTATTCACTTATTTTGGAAAATCTACGACAAATAAAAAAACTATAAAAATGGTCGAAAATCTGAAAAAAAATAGGAACTTATCATCTAAAATGAGCCCGAATAATACGATAGTTCTTAACCTTTTGTCAGAAACTTTTGAACGTTTTCAATTATTCTTAGCTGTTTTTAATCAATGAACGTTTTTGATAGGAAGAGTTTGTTTCAG</canonical_amplicon>
		<polymorphic_amplicon>TGACAATTGAGTTTCATATTTTTGAGCCTGTTTTGAATATTATTCACTTATTTTGGAAAATCTACGACAAATAAAAAAACTATAAAAATGGTCGAAAATCTGAAAAAAAATAGGAACTTATCATCTAAAATGAGCCCGAATAATACGATAGTTCTTAACCTTTTGTCAGAAACTTTTGAACRTTTTCAATTATTCTTAGCTGTTTTTAATCAATGAACGTTTTTGATAGGAAGAGTTTGTTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21041</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>801673</contig_pos>
        <strand>+</strand>
        <context>ATTCTTAGCT[G/T]TTTTTAATCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCTTAACCTTTTGTCAGAAACTTTTGAACGTTTTCAATTATTCTTAGCT</left_flank>
        <right_flank>TTTTTAATCAATGAACGTTTTTGATAGGAAGAGTTTGTTTCAGCGAAAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAACTAGGACCCTCTCTTTCTCTGCGCCTCCTCCATTCTCCTTCTCTCTCCCTCTCCTCTCTTTGTTTCTGTGTGTGCGAGAGGGGGAAGACTGGGTGTTCGCGGGCCCGGGACCCGTTTGAAAGGACGGGGTGTGTGTAGATAGATAATTTTTCGCGGGTAAATTTTTGAATGGTAATGTTTTTAGAAAACGTATTTTTTTTATTTTCGAGCAATTCTGGCAAAAATAACAAGATAAAATGTTTGGGTTGAGTAGAGAAATAATTGAAAATGCAATACTTTAAACGAAAACTATTATGACAATTGAGTTTCATATTTTTGAGCCTGTTTTGAATATTATTCACTTATTTTGGAAAATCTACGACAAATAAAAAAACTATAAAAATGGTCGAAAATCTGAAAAAAAATAGGAACTTATCATCTAAAATGAGCCCGAATAATACGATAGTTCTTAACCTTTTGTCAGAAACTTTTGAACGTTTTCAATTATTCTTAGCTGTTTTTAATCAATGAACGTTTTTGATAGGAAGAGTTTGTTTCAGCGAAAGATTGAAAATTGAACATTTCGAAATTTTGAAAAAATGTAATCAAATTCTCAAAATTTTACTTTTGAAGTATATTTTTACTTACGATAAGAAAAAGTGGTGTCACTTTTTTTTTAACTTCCTGCGTTTCTTATCTCTCAAAAAGCACCTGGTCGATACAGTGCAAAATGAACAGAACAGGTGAACATTTGATTAGATTTTGGCTAGAACAAAAGTCAATCAGGGGAATTTTAACCCTACATTTTTGAGAAATATGTGAGCAATCGGAAAATGTTCTCTCAAAGAGCATTTAGTTAAAAATTAAGTTTTTAATTAGTCAAAACAGTAAGCACTGTCTCATTGGACCAGTTTCGCTCAAGTAAATTACTGTGGATAACAAAGATTGTTTTACATATTCAAATTTTTATGTCACTAACAAATCAGTTATTCGGAAACTAAAATCAGTAAATCAGAA</canonical>
            <polymorphic>TCAACTAGGACCCTCTCTTTCTCTGCGCCTCCTCCATTCTCCTTCTCTCTCCCTCTCCTCTCTTTGTTTCTGTGTGTGCGAGAGGGGGAAGACTGGGTGTTCGCGGGCCCGGGACCCGTTTGAAAGGACGGGGTGTGTGTAGATAGATAATTTTTCGCGGGTAAATTTTTGAATGGTAATGTTTTTAGAAAACGTATTTTTTTTATTTTCGAGCAATTCTGGCAAAAATAACAAGATAAAATGTTTGGGTTGAGTAGAGAAATAATTGAAAATGCAATACTTTAAACGAAAACTATTATGACAATTGAGTTTCATATTTTTGAGCCTGTTTTGAATATTATTCACTTATTTTGGAAAATCTACGACAAATAAAAAAACTATAAAAATGGTCGAAAATCTGAAAAAAAATAGGAACTTATCATCTAAAATGAGCCCGAATAATACGATAGTTCTTAACCTTTTGTCAGAAACTTTTGAACGTTTTCAATTATTCTTAGCTKTTTTTAATCAATGAACGTTTTTGATAGGAAGAGTTTGTTTCAGCGAAAGATTGAAAATTGAACATTTCGAAATTTTGAAAAAATGTAATCAAATTCTCAAAATTTTACTTTTGAAGTATATTTTTACTTACGATAAGAAAAAGTGGTGTCACTTTTTTTTTAACTTCCTGCGTTTCTTATCTCTCAAAAAGCACCTGGTCGATACAGTGCAAAATGAACAGAACAGGTGAACATTTGATTAGATTTTGGCTAGAACAAAAGTCAATCAGGGGAATTTTAACCCTACATTTTTGAGAAATATGTGAGCAATCGGAAAATGTTCTCTCAAAGAGCATTTAGTTAAAAATTAAGTTTTTAATTAGTCAAAACAGTAAGCACTGTCTCATTGGACCAGTTTCGCTCAAGTAAATTACTGTGGATAACAAAGATTGTTTTACATATTCAAATTTTTATGTCACTAACAAATCAGTTATTCGGAAACTAAAATCAGTAAATCAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATAGTTCTTAACCTTTTGTCA</pcr_primer_p1>
		<pcr_primer_p2>GTGCTTTTTGAGAGATAAGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CGATAGTTCTTAACCTTTTGTCAGAAACTTTTGAACGTTTTCAATTATTCTTAGCTGTTTTTAATCAATGAACGTTTTTGATAGGAAGAGTTTGTTTCAGCGAAAGATTGAAAATTGAACATTTCGAAATTTTGAAAAAATGTAATCAAATTCTCAAAATTTTACTTTTGAAGTATATTTTTACTTACGATAAGAAAAAGTGGTGTCACTTTTTTTTTAACTTCCTGCGTTTCTTATCTCTCAAAAAGCAC</canonical_amplicon>
		<polymorphic_amplicon>CGATAGTTCTTAACCTTTTGTCAGAAACTTTTGAACGTTTTCAATTATTCTTAGCTKTTTTTAATCAATGAACGTTTTTGATAGGAAGAGTTTGTTTCAGCGAAAGATTGAAAATTGAACATTTCGAAATTTTGAAAAAATGTAATCAAATTCTCAAAATTTTACTTTTGAAGTATATTTTTACTTACGATAAGAAAAAGTGGTGTCACTTTTTTTTTAACTTCCTGCGTTTCTTATCTCTCAAAAAGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21042</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>804712</contig_pos>
        <strand>+</strand>
        <context>AACAACTACG[A/G]TCTCAGCTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTAAGAACAACTCGAAGAAACGGCAAAAAGCAAAAAACGAACAACTACG</left_flank>
        <right_flank>TCTCAGCTTTCAAATTGCTCACAAGTTATTAGAGTATCAGGTTTCGGATA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAATACTTTCCAAGTGTTATTAATCTACCGTGAAACCTCTAGTAGAAGGGCGTCCCACTGTCAACATTGAGCTCCGTTATCTCGACTAATATCAAAGATATAAAAATATATGTTTCAACTGCAAAAATGTTAATTATAGTATCACCAATATTTTATCAGTTGACAGATTTTTGATATCTCTAATTGGAAGCGAGATAAACGCCTTAAAGTTGGAAGTTGAGGGGCTTTTCTGTAACAGGTTTTACGGTGTTCAAGACATTCCAACTGACGGACCGCAATACTTATTTTTAGGTACATTAACTATCCGTATCAAAAAAAATATTGATCTTGTTCCGCTTGAGACTCATAGATTACAAGCTGACGAAGGAAGCTTTCAATGCTGGAATCAATCAATTCAAATTTGGTGTTCAATCTTCCGGGAGAATTCGTTACAAAAACGGACTAAAGTACTAAGAACAACTCGAAGAAACGGCAAAAAGCAAAAAACGAACAACTACGGTCTCAGCTTTCAAATTGCTCACAAGTTATTAGAGTATCAGGTTTCGGATATTCAAAATAGGAAGAGAACACCTGTTTGCGCAGGGATTCGGATTAGGCATTCAACAAGTATAGAAAAAGGCAAAAAGGTAACATAACTGTGAGTATATAAAAAAATAAATTATACCTAAAAACCTAGTAGCCACACCAGGAGGTCTAAAAAAGTTGAGTTCAAAACTTGGTTCATTTAAATAAAACCGTTTGGCGCGCGGGTGACATCATAAGTAGAACGGCGGAGCGCCGTTGCGCGCGCAACAGGTTTAGAGAGAAAAGAGAGAAAGGTAACTGCAAGCGTAGCTATGCGTTTTTATTCAGCTTGTGGAAAAAAGGAAAAACGAAAAGAAACCAAACAAAGCAGAAAGCTTCTTCGCCATGAAGTACCATGAAGTGACATAGTAATATCTCCATGGTTAAACGTGCACTACCCACTTTTGAAGCACCAACCCTTGTACTCCCTCCTTT</canonical>
            <polymorphic>AGAATACTTTCCAAGTGTTATTAATCTACCGTGAAACCTCTAGTAGAAGGGCGTCCCACTGTCAACATTGAGCTCCGTTATCTCGACTAATATCAAAGATATAAAAATATATGTTTCAACTGCAAAAATGTTAATTATAGTATCACCAATATTTTATCAGTTGACAGATTTTTGATATCTCTAATTGGAAGCGAGATAAACGCCTTAAAGTTGGAAGTTGAGGGGCTTTTCTGTAACAGGTTTTACGGTGTTCAAGACATTCCAACTGACGGACCGCAATACTTATTTTTAGGTACATTAACTATCCGTATCAAAAAAAATATTGATCTTGTTCCGCTTGAGACTCATAGATTACAAGCTGACGAAGGAAGCTTTCAATGCTGGAATCAATCAATTCAAATTTGGTGTTCAATCTTCCGGGAGAATTCGTTACAAAAACGGACTAAAGTACTAAGAACAACTCGAAGAAACGGCAAAAAGCAAAAAACGAACAACTACGRTCTCAGCTTTCAAATTGCTCACAAGTTATTAGAGTATCAGGTTTCGGATATTCAAAATAGGAAGAGAACACCTGTTTGCGCAGGGATTCGGATTAGGCATTCAACAAGTATAGAAAAAGGCAAAAAGGTAACATAACTGTGAGTATATAAAAAAATAAATTATACCTAAAAACCTAGTAGCCACACCAGGAGGTCTAAAAAAGTTGAGTTCAAAACTTGGTTCATTTAAATAAAACCGTTTGGCGCGCGGGTGACATCATAAGTAGAACGGCGGAGCGCCGTTGCGCGCGCAACAGGTTTAGAGAGAAAAGAGAGAAAGGTAACTGCAAGCGTAGCTATGCGTTTTTATTCAGCTTGTGGAAAAAAGGAAAAACGAAAAGAAACCAAACAAAGCAGAAAGCTTCTTCGCCATGAAGTACCATGAAGTGACATAGTAATATCTCCATGGTTAAACGTGCACTACCCACTTTTGAAGCACCAACCCTTGTACTCCCTCCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>263 252 187 139 99 30 30</canonical_bands>
                <polymorphic_bands>391 263 187 99 30 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCAATTCAAATTTGGTGTTC</pcr_primer_p1>
		<pcr_primer_p2>GTTATGTTACCTTTTTGCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATCAATTCAAATTTGGTGTTCAATCTTCCGGGAGAATTCGTTACAAAAACGGACTAAAGTACTAAGAACAACTCGAAGAAACGGCAAAAAGCAAAAAACGAACAACTACGGTCTCAGCTTTCAAATTGCTCACAAGTTATTAGAGTATCAGGTTTCGGATATTCAAAATAGGAAGAGAACACCTGTTTGCGCAGGGATTCGGATTAGGCATTCAACAAGTATAGAAAAAGGCAAAAAGGTAACATAAC</canonical_amplicon>
		<polymorphic_amplicon>AATCAATTCAAATTTGGTGTTCAATCTTCCGGGAGAATTCGTTACAAAAACGGACTAAAGTACTAAGAACAACTCGAAGAAACGGCAAAAAGCAAAAAACGAACAACTACGRTCTCAGCTTTCAAATTGCTCACAAGTTATTAGAGTATCAGGTTTCGGATATTCAAAATAGGAAGAGAACACCTGTTTGCGCAGGGATTCGGATTAGGCATTCAACAAGTATAGAAAAAGGCAAAAAGGTAACATAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21043</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>804687</contig_pos>
        <strand>+</strand>
        <context>AAGAAACGGC[A/G]AAAAGCAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCGTTACAAAAACGGACTAAAGTACTAAGAACAACTCGAAGAAACGGC</left_flank>
        <right_flank>AAAAGCAAAAAACGAACAACTACGGTCTCAGCTTTCAAATTGCTCACAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGAAAAGTTAAAACAGAAGGGCTAGAATACTTTCCAAGTGTTATTAATCTACCGTGAAACCTCTAGTAGAAGGGCGTCCCACTGTCAACATTGAGCTCCGTTATCTCGACTAATATCAAAGATATAAAAATATATGTTTCAACTGCAAAAATGTTAATTATAGTATCACCAATATTTTATCAGTTGACAGATTTTTGATATCTCTAATTGGAAGCGAGATAAACGCCTTAAAGTTGGAAGTTGAGGGGCTTTTCTGTAACAGGTTTTACGGTGTTCAAGACATTCCAACTGACGGACCGCAATACTTATTTTTAGGTACATTAACTATCCGTATCAAAAAAAATATTGATCTTGTTCCGCTTGAGACTCATAGATTACAAGCTGACGAAGGAAGCTTTCAATGCTGGAATCAATCAATTCAAATTTGGTGTTCAATCTTCCGGGAGAATTCGTTACAAAAACGGACTAAAGTACTAAGAACAACTCGAAGAAACGGCAAAAAGCAAAAAACGAACAACTACGGTCTCAGCTTTCAAATTGCTCACAAGTTATTAGAGTATCAGGTTTCGGATATTCAAAATAGGAAGAGAACACCTGTTTGCGCAGGGATTCGGATTAGGCATTCAACAAGTATAGAAAAAGGCAAAAAGGTAACATAACTGTGAGTATATAAAAAAATAAATTATACCTAAAAACCTAGTAGCCACACCAGGAGGTCTAAAAAAGTTGAGTTCAAAACTTGGTTCATTTAAATAAAACCGTTTGGCGCGCGGGTGACATCATAAGTAGAACGGCGGAGCGCCGTTGCGCGCGCAACAGGTTTAGAGAGAAAAGAGAGAAAGGTAACTGCAAGCGTAGCTATGCGTTTTTATTCAGCTTGTGGAAAAAAGGAAAAACGAAAAGAAACCAAACAAAGCAGAAAGCTTCTTCGCCATGAAGTACCATGAAGTGACATAGTAATATCTCCATGGTTAAACGTGCACTACCCACTTTTGAAG</canonical>
            <polymorphic>GAGGAAAAGTTAAAACAGAAGGGCTAGAATACTTTCCAAGTGTTATTAATCTACCGTGAAACCTCTAGTAGAAGGGCGTCCCACTGTCAACATTGAGCTCCGTTATCTCGACTAATATCAAAGATATAAAAATATATGTTTCAACTGCAAAAATGTTAATTATAGTATCACCAATATTTTATCAGTTGACAGATTTTTGATATCTCTAATTGGAAGCGAGATAAACGCCTTAAAGTTGGAAGTTGAGGGGCTTTTCTGTAACAGGTTTTACGGTGTTCAAGACATTCCAACTGACGGACCGCAATACTTATTTTTAGGTACATTAACTATCCGTATCAAAAAAAATATTGATCTTGTTCCGCTTGAGACTCATAGATTACAAGCTGACGAAGGAAGCTTTCAATGCTGGAATCAATCAATTCAAATTTGGTGTTCAATCTTCCGGGAGAATTCGTTACAAAAACGGACTAAAGTACTAAGAACAACTCGAAGAAACGGCRAAAAGCAAAAAACGAACAACTACGGTCTCAGCTTTCAAATTGCTCACAAGTTATTAGAGTATCAGGTTTCGGATATTCAAAATAGGAAGAGAACACCTGTTTGCGCAGGGATTCGGATTAGGCATTCAACAAGTATAGAAAAAGGCAAAAAGGTAACATAACTGTGAGTATATAAAAAAATAAATTATACCTAAAAACCTAGTAGCCACACCAGGAGGTCTAAAAAAGTTGAGTTCAAAACTTGGTTCATTTAAATAAAACCGTTTGGCGCGCGGGTGACATCATAAGTAGAACGGCGGAGCGCCGTTGCGCGCGCAACAGGTTTAGAGAGAAAAGAGAGAAAGGTAACTGCAAGCGTAGCTATGCGTTTTTATTCAGCTTGTGGAAAAAAGGAAAAACGAAAAGAAACCAAACAAAGCAGAAAGCTTCTTCGCCATGAAGTACCATGAAGTGACATAGTAATATCTCCATGGTTAAACGTGCACTACCCACTTTTGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCAATTCAAATTTGGTGTTC</pcr_primer_p1>
		<pcr_primer_p2>GTTATGTTACCTTTTTGCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATCAATTCAAATTTGGTGTTCAATCTTCCGGGAGAATTCGTTACAAAAACGGACTAAAGTACTAAGAACAACTCGAAGAAACGGCAAAAAGCAAAAAACGAACAACTACGGTCTCAGCTTTCAAATTGCTCACAAGTTATTAGAGTATCAGGTTTCGGATATTCAAAATAGGAAGAGAACACCTGTTTGCGCAGGGATTCGGATTAGGCATTCAACAAGTATAGAAAAAGGCAAAAAGGTAACATAAC</canonical_amplicon>
		<polymorphic_amplicon>AATCAATTCAAATTTGGTGTTCAATCTTCCGGGAGAATTCGTTACAAAAACGGACTAAAGTACTAAGAACAACTCGAAGAAACGGCRAAAAGCAAAAAACGAACAACTACGGTCTCAGCTTTCAAATTGCTCACAAGTTATTAGAGTATCAGGTTTCGGATATTCAAAATAGGAAGAGAACACCTGTTTGCGCAGGGATTCGGATTAGGCATTCAACAAGTATAGAAAAAGGCAAAAAGGTAACATAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21044</snp_id>
        <super_contig>c012800957.Contig1</super_contig>
        <contig_pos>15684</contig_pos>
        <strand></strand>
        <context>AGCAAAAAAA[T/G]AACTAGGAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ACGTGAGAAACTGGAGCTTGCAATATGGGGCACATTGGAGAGCAAAAAAA</left_flank>
        <right_flank>AACTAGGAATTTCCTATTGCATGTTCTTTTTATTTGGTTTGGTTAAAACG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAGAATCAATGTTGAAGAAGAGAATAAGAACGAAGAACACATAAAAGCGCATGGATAGCTGGCATTTGAACAGAAATAGTCGAGGGGAACACCACGGGTCATATTTATTACAACATTGCTCGACGGAAAAAAGGAGAAGGAAATTTGTGAAGGTCCTTCAGCTATCCTTTGTGCTACGGTTGCGCTTTCCAACAAACACCAACTAGCACAAAACACCCTATCATCATCTTCCTTTTTTCTCCTGGAGCCAGGCACCGGTAGTTGTTTATGCATGATGAAAAAAAGTGATGTAAGATGCTATGCTGAATTTACACGCAACACACACACACACATACACACAAGTTCAAAAGGAACCTTTTTTTGAAAAATTGGGACAAAAAGGAGAGAAACATTGGGAGGACTTGTGGACCCTCATGAAAGTATCGAATGTTGCAGAAGGGGACCCGTACGTGAGAAACTGGAGCTTGCAATATGGGGCACATTGGAGAGCAAAAAAATAACTAGGAATTTCCTATTGCATGTTCTTTTTATTTGGTTTGGTTAAAACGTTGAAACGAATTGAAGCCAATAGATTCTATTCTCTCATCAACTTGAGGATCGAGGGAAAAACGGCATGGATGTGATGTGAAGGAACCGGTCGATACAATTATAGGTTATAAAATTGAGTGACCAGTTTACCTCGGAGAGGAATACACAGTACCTCTCTACCCCTCGTGTTTCGGGTTGATGAAGACGTGACTTCACAAGAATACTGTTTTATAGTGGTTGCGATATAGTAGACGTTTGATCTCAAAATGTTATAGGTAATTCGTGAAGTTAGAACAGTTAATGTACAGTACCGGTTAATAAGATATACATAAACATAATTTTCCAGTGGATGTTAGGTCATTTTGAAAATTTTCAGATGCATGAAGCTCGGCTGTTAAATTTCCAATCACTTTGAAAATTTTGAAGCGGGAAAAGCACACCTAAATTGAAAAGTTTGCATTCACAAAATT</canonical>
            <polymorphic>TCTAGAATCAATGTTGAAGAAGAGAATAAGAACGAAGAACACATAAAAGCGCATGGATAGCTGGCATTTGAACAGAAATAGTCGAGGGGAACACCACGGGTCATATTTATTACAACATTGCTCGACGGAAAAAAGGAGAAGGAAATTTGTGAAGGTCCTTCAGCTATCCTTTGTGCTACGGTTGCGCTTTCCAACAAACACCAACTAGCACAAAACACCCTATCATCATCTTCCTTTTTTCTCCTGGAGCCAGGCACCGGTAGTTGTTTATGCATGATGAAAAAAAGTGATGTAAGATGCTATGCTGAATTTACACGCAACACACACACACACATACACACAAGTTCAAAAGGAACCTTTTTTTGAAAAATTGGGACAAAAAGGAGAGAAACATTGGGAGGACTTGTGGACCCTCATGAAAGTATCGAATGTTGCAGAAGGGGACCCGTACGTGAGAAACTGGAGCTTGCAATATGGGGCACATTGGAGAGCAAAAAAAKAACTAGGAATTTCCTATTGCATGTTCTTTTTATTTGGTTTGGTTAAAACGTTGAAACGAATTGAAGCCAATAGATTCTATTCTCTCATCAACTTGAGGATCGAGGGAAAAACGGCATGGATGTGATGTGAAGGAACCGGTCGATACAATTATAGGTTATAAAATTGAGTGACCAGTTTACCTCGGAGAGGAATACACAGTACCTCTCTACCCCTCGTGTTTCGGGTTGATGAAGACGTGACTTCACAAGAATACTGTTTTATAGTGGTTGCGATATAGTAGACGTTTGATCTCAAAATGTTATAGGTAATTCGTGAAGTTAGAACAGTTAATGTACAGTACCGGTTAATAAGATATACATAAACATAATTTTCCAGTGGATGTTAGGTCATTTTGAAAATTTTCAGATGCATGAAGCTCGGCTGTTAAATTTCCAATCACTTTGAAAATTTTGAAGCGGGAAAAGCACACCTAAATTGAAAAGTTTGCATTCACAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAAAAATTGGGACAAA</pcr_primer_p1>
		<pcr_primer_p2>CCTCAAGTTGATGAGAGAATAGA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAAAAATTGGGACAAAAAGGAGAGAAACATTGGGAGGACTTGTGGACCCTCATGAAAGTATCGAATGTTGCAGAAGGGGACCCGTACGTGAGAAACTGGAGCTTGCAATATGGGGCACATTGGAGAGCAAAAAAATAACTAGGAATTTCCTATTGCATGTTCTTTTTATTTGGTTTGGTTAAAACGTTGAAACGAATTGAAGCCAATAGATTCTATTCTCTCATCAACTTGAGG</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAAAAATTGGGACAAAAAGGAGAGAAACATTGGGAGGACTTGTGGACCCTCATGAAAGTATCGAATGTTGCAGAAGGGGACCCGTACGTGAGAAACTGGAGCTTGCAATATGGGGCACATTGGAGAGCAAAAAAAKAACTAGGAATTTCCTATTGCATGTTCTTTTTATTTGGTTTGGTTAAAACGTTGAAACGAATTGAAGCCAATAGATTCTATTCTCTCATCAACTTGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21045</snp_id>
        <super_contig>c012800957.Contig1</super_contig>
        <contig_pos>38951</contig_pos>
        <strand>+</strand>
        <context>TAAAGTACGA[A/G]TTATGAATCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTATCTCAATAATTTTTTTCTCCGTAATCCCTTATCCTGTAAAGTACGA</left_flank>
        <right_flank>TTATGAATCATTTTTCAGTTTTAAGGTTCACCAGAGGGGTGTCCTTATTC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGAGAAGGTATAAAATGCAATATGGGGTTTTATTGTTTTATAGATTTTTTTTCTCCTGACTCAAGTGTAGGAGAAGTTTAGGTACGGTAGCAATATCCTTAAATGCGCATGTAATTTTCATGAACCTTTGAAGTTTGCTCATTCGATTTCTGTAATTATTTTATTCTTTTTTCTTATTTTTCATGATTTTCATGCAATTGTTTTGAACTAATGTTCAAAAATGTTAAAAATCGATAAAAGTCATCAAAAATTGAAGAAAGTAGGCCAGAAAATGATTACGAAACTAAACTTTGAAGGTACATTAAAGTTACATGTGCCTTTAAAGATTACCGGACCTTAAGCTCCGCCCGTTTTCGGCAGACCAGAGTAGAATGTTTACTTTCGATCCTCACTGATTCTTGCAATTTTTAAAACTAGAATATATTTCCATGATCAGCTCTGAGGTAATTATCTCAATAATTTTTTTCTCCGTAATCCCTTATCCTGTAAAGTACGAGTTATGAATCATTTTTCAGTTTTAAGGTTCACCAGAGGGGTGTCCTTATTCAAAAATGAATTTCTTATACAGTTCTTACGATATTATCAGTGTTGTTATAATTTAAAAATCTAAAATAAGGAAATTTTCATTCACCAGCATGAAAAGATCACGAAGAGAGTCTTATTCAAAGTACGAAGCTCTTTTTCTCAGTTTACATTCCGATTCCCTGTTTCCCGTTATGAAAATAAATAAATAAACTATAATTGTTTATCGTACAGCACCTCTTCTGACGACTGAAGACGTAATTTCAGAATCAGTAATATTATTGCTGAAAATAGACAATGCTCTCGAGTATTGATAGTGACGTCTATCCTAATGCCTATTTTCTGGTTTTTCAATTGTTTTTAATGATCAATTTTCACGACTACATATTTTTCTTCTTTGTTGCTGCCAAGTACAGTAATCTAAAAAAGCTTTTAAGATCAAAGGCCTCGCTTCACAAAAAGGAGCTCCTTGATG</canonical>
            <polymorphic>TTTTGAGAAGGTATAAAATGCAATATGGGGTTTTATTGTTTTATAGATTTTTTTTCTCCTGACTCAAGTGTAGGAGAAGTTTAGGTACGGTAGCAATATCCTTAAATGCGCATGTAATTTTCATGAACCTTTGAAGTTTGCTCATTCGATTTCTGTAATTATTTTATTCTTTTTTCTTATTTTTCATGATTTTCATGCAATTGTTTTGAACTAATGTTCAAAAATGTTAAAAATCGATAAAAGTCATCAAAAATTGAAGAAAGTAGGCCAGAAAATGATTACGAAACTAAACTTTGAAGGTACATTAAAGTTACATGTGCCTTTAAAGATTACCGGACCTTAAGCTCCGCCCGTTTTCGGCAGACCAGAGTAGAATGTTTACTTTCGATCCTCACTGATTCTTGCAATTTTTAAAACTAGAATATATTTCCATGATCAGCTCTGAGGTAATTATCTCAATAATTTTTTTCTCCGTAATCCCTTATCCTGTAAAGTACGARTTATGAATCATTTTTCAGTTTTAAGGTTCACCAGAGGGGTGTCCTTATTCAAAAATGAATTTCTTATACAGTTCTTACGATATTATCAGTGTTGTTATAATTTAAAAATCTAAAATAAGGAAATTTTCATTCACCAGCATGAAAAGATCACGAAGAGAGTCTTATTCAAAGTACGAAGCTCTTTTTCTCAGTTTACATTCCGATTCCCTGTTTCCCGTTATGAAAATAAATAAATAAACTATAATTGTTTATCGTACAGCACCTCTTCTGACGACTGAAGACGTAATTTCAGAATCAGTAATATTATTGCTGAAAATAGACAATGCTCTCGAGTATTGATAGTGACGTCTATCCTAATGCCTATTTTCTGGTTTTTCAATTGTTTTTAATGATCAATTTTCACGACTACATATTTTTCTTCTTTGTTGCTGCCAAGTACAGTAATCTAAAAAAGCTTTTAAGATCAAAGGCCTCGCTTCACAAAAAGGAGCTCCTTGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATATATTTCCATGATCAGCTC</pcr_primer_p1>
		<pcr_primer_p2>TTGAATAAGACTCTCTTCGTGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATATATTTCCATGATCAGCTCTGAGGTAATTATCTCAATAATTTTTTTCTCCGTAATCCCTTATCCTGTAAAGTACGAGTTATGAATCATTTTTCAGTTTTAAGGTTCACCAGAGGGGTGTCCTTATTCAAAAATGAATTTCTTATACAGTTCTTACGATATTATCAGTGTTGTTATAATTTAAAAATCTAAAATAAGGAAATTTTCATTCACCAGCATGAAAAGATCACGAAGAGAGTCTTATTCAA</canonical_amplicon>
		<polymorphic_amplicon>GAATATATTTCCATGATCAGCTCTGAGGTAATTATCTCAATAATTTTTTTCTCCGTAATCCCTTATCCTGTAAAGTACGARTTATGAATCATTTTTCAGTTTTAAGGTTCACCAGAGGGGTGTCCTTATTCAAAAATGAATTTCTTATACAGTTCTTACGATATTATCAGTGTTGTTATAATTTAAAAATCTAAAATAAGGAAATTTTCATTCACCAGCATGAAAAGATCACGAAGAGAGTCTTATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21046</snp_id>
        <super_contig>c012800957.Contig1</super_contig>
        <contig_pos>40190</contig_pos>
        <strand>+</strand>
        <context>GCAACCAGCG[A/G]CTCCTCACCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCAGGCTGGTTTCCGAACTATATTTCCGAGAAACAGCTAGCAACCAGCG</left_flank>
        <right_flank>CTCCTCACCAAAACCAGCCTTGCAGGTTGAAATGGAGAGTGATTCGTTTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTTCCTTGTCTTCAGTAGTTTTTGCGATTTTTCTGTCATCCTTCTGAGAATTCCAGAAGGTGTCAGAGTGTATGCTATAGATACCATGTGGAATCTGAAAAACAGTAGAATTTTTCCTAATAAGTCACACGACTTCTTCTGATATCCTTCTTCTAAGCTCATCGCCTAGGGAAATCAAGGAATGGTGAATGACGAAGGTGAAGTTGGGATGAAATTTAGTATATAGGCTTAGAAGAGCTCGCTTTCCCATTTTTCCTCTAGTTGTGACTACCTCTTCTTCGAAGTATACCACACTATAATGTTTGGAAACTATCTGTCCGAGCATGGCTCACGCCACGTGTCACCTCACCCATCTGAGAGGTCGCGTGAACCGTCGACTGAGCGGCCGAGGACAGCAATCAATTTTATTCCAAACCTTTCGGGAGGATTGATAGAAGAAGACCAATTAGCAGGCTGGTTTCCGAACTATATTTCCGAGAAACAGCTAGCAACCAGCGACTCCTCACCAAAACCAGCCTTGCAGGTTGAAATGGAGAGTGATTCGTTTGTTGATGAAAAGAGGGAGCAAGAAACCGCTCCAGCAGATCCTGTGCAATTTCCAGCTGCTCCTGAAGAAATCGCTTCAGTCGAAGCGGCAGCTCCATCTAACGAAGACGTGAGTTGTGTCTACGGTATTTCTCAATTTTAAATATTGTCCATTCTAAATCGAATTGAAGATGTTTGTACGGGCTTCAGTCTAGTCCTCATTTTTGTCTTGATTTTCGAAAAATCGTCCTCAGTCAGAAACCTCTTATGTATGATAAAAAGAACAGCAATCTAAATCTTGTTTGAACCAACTGTGCCCGATTCCCAAAATTAGGGCAATTGTTACCTCTTTGTAGCCAATTTTTCGAGACAGAAATACTGAGATTTCAACGGGCTGAAAAATTCAACTATGAGATTGTTGGTGCTCTTCATGTCTTGTGAATGTTGATTGAGTTCATCCATGATATCTCGGT</canonical>
            <polymorphic>TACTTCCTTGTCTTCAGTAGTTTTTGCGATTTTTCTGTCATCCTTCTGAGAATTCCAGAAGGTGTCAGAGTGTATGCTATAGATACCATGTGGAATCTGAAAAACAGTAGAATTTTTCCTAATAAGTCACACGACTTCTTCTGATATCCTTCTTCTAAGCTCATCGCCTAGGGAAATCAAGGAATGGTGAATGACGAAGGTGAAGTTGGGATGAAATTTAGTATATAGGCTTAGAAGAGCTCGCTTTCCCATTTTTCCTCTAGTTGTGACTACCTCTTCTTCGAAGTATACCACACTATAATGTTTGGAAACTATCTGTCCGAGCATGGCTCACGCCACGTGTCACCTCACCCATCTGAGAGGTCGCGTGAACCGTCGACTGAGCGGCCGAGGACAGCAATCAATTTTATTCCAAACCTTTCGGGAGGATTGATAGAAGAAGACCAATTAGCAGGCTGGTTTCCGAACTATATTTCCGAGAAACAGCTAGCAACCAGCGRCTCCTCACCAAAACCAGCCTTGCAGGTTGAAATGGAGAGTGATTCGTTTGTTGATGAAAAGAGGGAGCAAGAAACCGCTCCAGCAGATCCTGTGCAATTTCCAGCTGCTCCTGAAGAAATCGCTTCAGTCGAAGCGGCAGCTCCATCTAACGAAGACGTGAGTTGTGTCTACGGTATTTCTCAATTTTAAATATTGTCCATTCTAAATCGAATTGAAGATGTTTGTACGGGCTTCAGTCTAGTCCTCATTTTTGTCTTGATTTTCGAAAAATCGTCCTCAGTCAGAAACCTCTTATGTATGATAAAAAGAACAGCAATCTAAATCTTGTTTGAACCAACTGTGCCCGATTCCCAAAATTAGGGCAATTGTTACCTCTTTGTAGCCAATTTTTCGAGACAGAAATACTGAGATTTCAACGGGCTGAAAAATTCAACTATGAGATTGTTGGTGCTCTTCATGTCTTGTGAATGTTGATTGAGTTCATCCATGATATCTCGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>406 306 153 93 42</canonical_bands>
                <polymorphic_bands>448 306 153 93</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATAGAAGAAGACCAATTAGCA</pcr_primer_p1>
		<pcr_primer_p2>GAAATACCGTAGACACAACTCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGATAGAAGAAGACCAATTAGCAGGCTGGTTTCCGAACTATATTTCCGAGAAACAGCTAGCAACCAGCGACTCCTCACCAAAACCAGCCTTGCAGGTTGAAATGGAGAGTGATTCGTTTGTTGATGAAAAGAGGGAGCAAGAAACCGCTCCAGCAGATCCTGTGCAATTTCCAGCTGCTCCTGAAGAAATCGCTTCAGTCGAAGCGGCAGCTCCATCTAACGAAGACGTGAGTTGTGTCTACGGTATTTC</canonical_amplicon>
		<polymorphic_amplicon>TGATAGAAGAAGACCAATTAGCAGGCTGGTTTCCGAACTATATTTCCGAGAAACAGCTAGCAACCAGCGRCTCCTCACCAAAACCAGCCTTGCAGGTTGAAATGGAGAGTGATTCGTTTGTTGATGAAAAGAGGGAGCAAGAAACCGCTCCAGCAGATCCTGTGCAATTTCCAGCTGCTCCTGAAGAAATCGCTTCAGTCGAAGCGGCAGCTCCATCTAACGAAGACGTGAGTTGTGTCTACGGTATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21047</snp_id>
        <super_contig>c012800957.Contig1</super_contig>
        <contig_pos>172233</contig_pos>
        <strand>+</strand>
        <context>TGACATTTAC[A/G]TTTGACCAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAAGCGTAGGTGGAAGATGAGTTGGGAGAATGTGCCACTGACATTTAC</left_flank>
        <right_flank>TTTGACCAATGAAAGAACATTTCAATACTAATCCAGCCATTTTTAATTAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAAAAAACAAACTAACATTTTTTGAGGGACACGAAGAGTTTCAAGTGTTGTTATGTGTTCGCGCGACAGATTTGTCAAAGCCCCATTAGGACTTTTTGACGTTTATTCTAAATTTAGAACATTTTCCGAGGATAGAGTATCAGACTTATTTTTAGTACTCCAAACAAATGTTCACCCAAATTTTTTTCAGCGCGTGGAGGATACGAAGGGATCTGGACAGTGACGAAGAAGACATGATAGTCACTGATGAATGCTACAATAAATATAATGAAGAAAATCATTTTAAAGTGTTTTCCAATTATTTGAATCGCAAGAATTCGTCGCATTATTCTCCCATCGCTCCATCATTTCAACAAGCCCTTCTGACATTACAGGTACGTGTTCTTTTCTTCTTTTTTTCTTTTGATAAGGGTGAGGGTGGACTCTGCTTCTATATTCACGTCCCTATTCAAGCGTAGGTGGAAGATGAGTTGGGAGAATGTGCCACTGACATTTACGTTTGACCAATGAAAGAACATTTCAATACTAATCCAGCCATTTTTAATTAGTCAAAAATGTTGGGGCCGTAGTTTACTAATTTGTTATTAGTGAGCGAAATTTTTTGAACGTAGCAGTTTCGGACATCACATTGAATGGGGATGAGGATGGAAGAGCTGAAAGCATCGGATAGTTTTTTTTTTAATGAGGAACAAGTCCGGGGGAAGTTCTAGAAGCAGTGCTAATTATGTTTAGACATGACAAAAACAGAAGAAAAAATTATAGAAGGCCAGAAATACATTTTTTTTTGTCGTTCAAAGTACTTCGAAAATGTCAAACTAGTTCCTGATTTTCTTTCTGCTCAGTTCCAAGCTACCGTAACCCAGATCATGATTACAATCTATATCTTTGAACTTTGCCTGCAAAAGTTCAAAATGTAAACTTTTCTGCTCGAAAAAAAGATGATGACGTAGCTCTCTCTGAAAGTTCCAACGATTCATCTCAAAATCCACTTACAACCA</canonical>
            <polymorphic>TTGAAAAAACAAACTAACATTTTTTGAGGGACACGAAGAGTTTCAAGTGTTGTTATGTGTTCGCGCGACAGATTTGTCAAAGCCCCATTAGGACTTTTTGACGTTTATTCTAAATTTAGAACATTTTCCGAGGATAGAGTATCAGACTTATTTTTAGTACTCCAAACAAATGTTCACCCAAATTTTTTTCAGCGCGTGGAGGATACGAAGGGATCTGGACAGTGACGAAGAAGACATGATAGTCACTGATGAATGCTACAATAAATATAATGAAGAAAATCATTTTAAAGTGTTTTCCAATTATTTGAATCGCAAGAATTCGTCGCATTATTCTCCCATCGCTCCATCATTTCAACAAGCCCTTCTGACATTACAGGTACGTGTTCTTTTCTTCTTTTTTTCTTTTGATAAGGGTGAGGGTGGACTCTGCTTCTATATTCACGTCCCTATTCAAGCGTAGGTGGAAGATGAGTTGGGAGAATGTGCCACTGACATTTACRTTTGACCAATGAAAGAACATTTCAATACTAATCCAGCCATTTTTAATTAGTCAAAAATGTTGGGGCCGTAGTTTACTAATTTGTTATTAGTGAGCGAAATTTTTTGAACGTAGCAGTTTCGGACATCACATTGAATGGGGATGAGGATGGAAGAGCTGAAAGCATCGGATAGTTTTTTTTTTAATGAGGAACAAGTCCGGGGGAAGTTCTAGAAGCAGTGCTAATTATGTTTAGACATGACAAAAACAGAAGAAAAAATTATAGAAGGCCAGAAATACATTTTTTTTTGTCGTTCAAAGTACTTCGAAAATGTCAAACTAGTTCCTGATTTTCTTTCTGCTCAGTTCCAAGCTACCGTAACCCAGATCATGATTACAATCTATATCTTTGAACTTTGCCTGCAAAAGTTCAAAATGTAAACTTTTCTGCTCGAAAAAAAGATGATGACGTAGCTCTCTCTGAAAGTTCCAACGATTCATCTCAAAATCCACTTACAACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>339 278 110 101 62 57 53</canonical_bands>
                <polymorphic_bands>339 278 167 101 62 53</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAAGCCCTTCTGACATTAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTTCGCTCACTAATAACAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACAAGCCCTTCTGACATTACAGGTACGTGTTCTTTTCTTCTTTTTTTCTTTTGATAAGGGTGAGGGTGGACTCTGCTTCTATATTCACGTCCCTATTCAAGCGTAGGTGGAAGATGAGTTGGGAGAATGTGCCACTGACATTTACGTTTGACCAATGAAAGAACATTTCAATACTAATCCAGCCATTTTTAATTAGTCAAAAATGTTGGGGCCGTAGTTTACTAATTTGTTATTAGTGAGCGAAATTTT</canonical_amplicon>
		<polymorphic_amplicon>AACAAGCCCTTCTGACATTACAGGTACGTGTTCTTTTCTTCTTTTTTTCTTTTGATAAGGGTGAGGGTGGACTCTGCTTCTATATTCACGTCCCTATTCAAGCGTAGGTGGAAGATGAGTTGGGAGAATGTGCCACTGACATTTACRTTTGACCAATGAAAGAACATTTCAATACTAATCCAGCCATTTTTAATTAGTCAAAAATGTTGGGGCCGTAGTTTACTAATTTGTTATTAGTGAGCGAAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21048</snp_id>
        <super_contig>c012800957.Contig1</super_contig>
        <contig_pos>172453</contig_pos>
        <strand>+</strand>
        <context>TAGAAGCAGT[A/G]CTAATTATGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGTTTTTTTTTTAATGAGGAACAAGTCCGGGGGAAGTTCTAGAAGCAGT</left_flank>
        <right_flank>CTAATTATGTTTAGACATGACAAAAACAGAAGAAAAAATTATAGAAGGCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTGACGAAGAAGACATGATAGTCACTGATGAATGCTACAATAAATATAATGAAGAAAATCATTTTAAAGTGTTTTCCAATTATTTGAATCGCAAGAATTCGTCGCATTATTCTCCCATCGCTCCATCATTTCAACAAGCCCTTCTGACATTACAGGTACGTGTTCTTTTCTTCTTTTTTTCTTTTGATAAGGGTGAGGGTGGACTCTGCTTCTATATTCACGTCCCTATTCAAGCGTAGGTGGAAGATGAGTTGGGAGAATGTGCCACTGACATTTACGTTTGACCAATGAAAGAACATTTCAATACTAATCCAGCCATTTTTAATTAGTCAAAAATGTTGGGGCCGTAGTTTACTAATTTGTTATTAGTGAGCGAAATTTTTTGAACGTAGCAGTTTCGGACATCACATTGAATGGGGATGAGGATGGAAGAGCTGAAAGCATCGGATAGTTTTTTTTTTAATGAGGAACAAGTCCGGGGGAAGTTCTAGAAGCAGTGCTAATTATGTTTAGACATGACAAAAACAGAAGAAAAAATTATAGAAGGCCAGAAATACATTTTTTTTTGTCGTTCAAAGTACTTCGAAAATGTCAAACTAGTTCCTGATTTTCTTTCTGCTCAGTTCCAAGCTACCGTAACCCAGATCATGATTACAATCTATATCTTTGAACTTTGCCTGCAAAAGTTCAAAATGTAAACTTTTCTGCTCGAAAAAAAGATGATGACGTAGCTCTCTCTGAAAGTTCCAACGATTCATCTCAAAATCCACTTACAACCAAATGATGTCACTGTTGTGATGATGATCTCCGAGCAGTCGTCTCGTGTAGTGAAAAGAAAAGGATAACTTGCAACACTTTATTCATCCGATCATCTCATTCATTGAATGTGTAAATAAATCTGGGCAGTATTAACACGACACTGCAATAATTGTTCTTTTGTATTTCAGCAGACAAAGGGACTAAGACACGGTGAGCAGATCACCAAGAGCTCATCCAAGT</canonical>
            <polymorphic>AGTGACGAAGAAGACATGATAGTCACTGATGAATGCTACAATAAATATAATGAAGAAAATCATTTTAAAGTGTTTTCCAATTATTTGAATCGCAAGAATTCGTCGCATTATTCTCCCATCGCTCCATCATTTCAACAAGCCCTTCTGACATTACAGGTACGTGTTCTTTTCTTCTTTTTTTCTTTTGATAAGGGTGAGGGTGGACTCTGCTTCTATATTCACGTCCCTATTCAAGCGTAGGTGGAAGATGAGTTGGGAGAATGTGCCACTGACATTTACGTTTGACCAATGAAAGAACATTTCAATACTAATCCAGCCATTTTTAATTAGTCAAAAATGTTGGGGCCGTAGTTTACTAATTTGTTATTAGTGAGCGAAATTTTTTGAACGTAGCAGTTTCGGACATCACATTGAATGGGGATGAGGATGGAAGAGCTGAAAGCATCGGATAGTTTTTTTTTTAATGAGGAACAAGTCCGGGGGAAGTTCTAGAAGCAGTRCTAATTATGTTTAGACATGACAAAAACAGAAGAAAAAATTATAGAAGGCCAGAAATACATTTTTTTTTGTCGTTCAAAGTACTTCGAAAATGTCAAACTAGTTCCTGATTTTCTTTCTGCTCAGTTCCAAGCTACCGTAACCCAGATCATGATTACAATCTATATCTTTGAACTTTGCCTGCAAAAGTTCAAAATGTAAACTTTTCTGCTCGAAAAAAAGATGATGACGTAGCTCTCTCTGAAAGTTCCAACGATTCATCTCAAAATCCACTTACAACCAAATGATGTCACTGTTGTGATGATGATCTCCGAGCAGTCGTCTCGTGTAGTGAAAAGAAAAGGATAACTTGCAACACTTTATTCATCCGATCATCTCATTCATTGAATGTGTAAATAAATCTGGGCAGTATTAACACGACACTGCAATAATTGTTCTTTTGTATTTCAGCAGACAAAGGGACTAAGACACGGTGAGCAGATCACCAAGAGCTCATCCAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>270 104 92 91 48 47 36 35 33 28 25 24 22 22 21 20 19 18 9 8 6 5 5 5 4 3</canonical_bands>
                <polymorphic_bands>362 104 91 48 47 36 35 33 28 25 24 22 22 21 20 19 18 9 8 6 5 5 5 4 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCCAGCCATTTTTAATTAGTC</pcr_primer_p1>
		<pcr_primer_p2>ATTTCTGGCCTTCTATAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATCCAGCCATTTTTAATTAGTCAAAAATGTTGGGGCCGTAGTTTACTAATTTGTTATTAGTGAGCGAAATTTTTTGAACGTAGCAGTTTCGGACATCACATTGAATGGGGATGAGGATGGAAGAGCTGAAAGCATCGGATAGTTTTTTTTTTAATGAGGAACAAGTCCGGGGGAAGTTCTAGAAGCAGTGCTAATTATGTTTAGACATGACAAAAACAGAAGAAAAAATTATAGAAGGCCAGAAAT</canonical_amplicon>
		<polymorphic_amplicon>AATCCAGCCATTTTTAATTAGTCAAAAATGTTGGGGCCGTAGTTTACTAATTTGTTATTAGTGAGCGAAATTTTTTGAACGTAGCAGTTTCGGACATCACATTGAATGGGGATGAGGATGGAAGAGCTGAAAGCATCGGATAGTTTTTTTTTTAATGAGGAACAAGTCCGGGGGAAGTTCTAGAAGCAGTRCTAATTATGTTTAGACATGACAAAAACAGAAGAAAAAATTATAGAAGGCCAGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21049</snp_id>
        <super_contig>c012901526.Contig1</super_contig>
        <contig_pos>65016</contig_pos>
        <strand>+</strand>
        <context>CCATTTTTTA[A/C]TTATTCTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTTGAACGTATTCAGGTCATTTCAAAGCCCACTATTTGCCATTTTTTA</left_flank>
        <right_flank>TTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTTTCTCCGGTTAATTTTAGTTCGTTTTGGCAGTTTCATAACCTGAAAATTACATTTTAAAGTTGAATTTTCGTTTTTTCAGCACTTTTGAACTTGATTTCGAAAAAAATCGGAAAGATGATTATCAGTGGAGCGTGAATGCATTATCATTAAATAGCACTAGTTTTAAAATCATTTAATGTCAATTTCAGCCATTTTCAGTCTATTTGACAATTTTCAGCTCGTTTTTAGATTTTGTTTCCAATTTTCAGCCAAGACAATTCGCTTAAGATAGTTTTCGTTTTTATTTTTGCAAAATTTGGCAATTTTCAGCATATTTTTGAATTATTTCAAGAAAAAGAAACATCTTTTTCTGAAATATCAAAATTTAAATTCTGAATTTAACACTATCAAAATCCTACAAAATTTTTTTTATTTTCTATCAAATTGTGCCATTTTCAGCCCTTTTTTGAACGTATTCAGGTCATTTCAAAGCCCACTATTTGCCATTTTTTAATTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCACAAGGATTTGCGTTTATGTCATTTTGATGAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAA</canonical>
            <polymorphic>AATTTTTTCTCCGGTTAATTTTAGTTCGTTTTGGCAGTTTCATAACCTGAAAATTACATTTTAAAGTTGAATTTTCGTTTTTTCAGCACTTTTGAACTTGATTTCGAAAAAAATCGGAAAGATGATTATCAGTGGAGCGTGAATGCATTATCATTAAATAGCACTAGTTTTAAAATCATTTAATGTCAATTTCAGCCATTTTCAGTCTATTTGACAATTTTCAGCTCGTTTTTAGATTTTGTTTCCAATTTTCAGCCAAGACAATTCGCTTAAGATAGTTTTCGTTTTTATTTTTGCAAAATTTGGCAATTTTCAGCATATTTTTGAATTATTTCAAGAAAAAGAAACATCTTTTTCTGAAATATCAAAATTTAAATTCTGAATTTAACACTATCAAAATCCTACAAAATTTTTTTTATTTTCTATCAAATTGTGCCATTTTCAGCCCTTTTTTGAACGTATTCAGGTCATTTCAAAGCCCACTATTTGCCATTTTTTAMTTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCACAAGGATTTGCGTTTATGTCATTTTGATGAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>403 112 102 93 90 76 46 24 16 15 13 10</canonical_bands>
                <polymorphic_bands>403 136 102 93 90 76 46 16 15 13 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>125 118 110 70 42 41 41 37 36 35 31 30 28 26 26 24 21 19 18 17 16 16 13 9 9 8 8 8 7 6 5 0</canonical_bands>
                <polymorphic_bands>125 118 110 100 42 41 41 37 36 35 31 28 26 26 24 21 19 18 17 16 16 13 9 9 8 8 8 7 6 5 0</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATTTTCAGCATATTTTTGAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTGGAGAATTTCGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAATTTTCAGCATATTTTTGAATTATTTCAAGAAAAAGAAACATCTTTTTCTGAAATATCAAAATTTAAATTCTGAATTTAACACTATCAAAATCCTACAAAATTTTTTTTATTTTCTATCAAATTGTGCCATTTTCAGCCCTTTTTTGAACGTATTCAGGTCATTTCAAAGCCCACTATTTGCCATTTTTTAATTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTT</canonical_amplicon>
		<polymorphic_amplicon>CAATTTTCAGCATATTTTTGAATTATTTCAAGAAAAAGAAACATCTTTTTCTGAAATATCAAAATTTAAATTCTGAATTTAACACTATCAAAATCCTACAAAATTTTTTTTATTTTCTATCAAATTGTGCCATTTTCAGCCCTTTTTTGAACGTATTCAGGTCATTTCAAAGCCCACTATTTGCCATTTTTTAMTTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21050</snp_id>
        <super_contig>c012901526.Contig1</super_contig>
        <contig_pos>65040</contig_pos>
        <strand>+</strand>
        <context>CAGTTTTTTW[A/T]ATAAAATTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAAGCCCACTATTTGCCATTTTTTAATTATTCTTTTTCACAGTTTTTTA</left_flank>
        <right_flank>ATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGTTTTGGCAGTTTCATAACCTGAAAATTACATTTTAAAGTTGAATTTTCGTTTTTTCAGCACTTTTGAACTTGATTTCGAAAAAAATCGGAAAGATGATTATCAGTGGAGCGTGAATGCATTATCATTAAATAGCACTAGTTTTAAAATCATTTAATGTCAATTTCAGCCATTTTCAGTCTATTTGACAATTTTCAGCTCGTTTTTAGATTTTGTTTCCAATTTTCAGCCAAGACAATTCGCTTAAGATAGTTTTCGTTTTTATTTTTGCAAAATTTGGCAATTTTCAGCATATTTTTGAATTATTTCAAGAAAAAGAAACATCTTTTTCTGAAATATCAAAATTTAAATTCTGAATTTAACACTATCAAAATCCTACAAAATTTTTTTTATTTTCTATCAAATTGTGCCATTTTCAGCCCTTTTTTGAACGTATTCAGGTCATTTCAAAGCCCACTATTTGCCATTTTTTAATTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCACAAGGATTTGCGTTTATGTCATTTTGATGAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTT</canonical>
            <polymorphic>TTCGTTTTGGCAGTTTCATAACCTGAAAATTACATTTTAAAGTTGAATTTTCGTTTTTTCAGCACTTTTGAACTTGATTTCGAAAAAAATCGGAAAGATGATTATCAGTGGAGCGTGAATGCATTATCATTAAATAGCACTAGTTTTAAAATCATTTAATGTCAATTTCAGCCATTTTCAGTCTATTTGACAATTTTCAGCTCGTTTTTAGATTTTGTTTCCAATTTTCAGCCAAGACAATTCGCTTAAGATAGTTTTCGTTTTTATTTTTGCAAAATTTGGCAATTTTCAGCATATTTTTGAATTATTTCAAGAAAAAGAAACATCTTTTTCTGAAATATCAAAATTTAAATTCTGAATTTAACACTATCAAAATCCTACAAAATTTTTTTTATTTTCTATCAAATTGTGCCATTTTCAGCCCTTTTTTGAACGTATTCAGGTCATTTCAAAGCCCACTATTTGCCATTTTTTAATTATTCTTTTTCACAGTTTTTTAWATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCACAAGGATTTGCGTTTATGTCATTTTGATGAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>403 202 149 109 99 38</canonical_bands>
                <polymorphic_bands>552 202 109 99 38</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>403 112 102 100 93 90 37 24 16 13 10</canonical_bands>
                <polymorphic_bands>427 112 102 100 93 90 37 16 13 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGTATTCAGGTCATTTCAAAG</pcr_primer_p1>
		<pcr_primer_p2>GTGGACTGAATTAGATGTTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACGTATTCAGGTCATTTCAAAGCCCACTATTTGCCATTTTTTAATTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCAC</canonical_amplicon>
		<polymorphic_amplicon>ACGTATTCAGGTCATTTCAAAGCCCACTATTTGCCATTTTTTAATTATTCTTTTTCACAGTTTTTTAWATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21052</snp_id>
        <super_contig>c012901526.Contig1</super_contig>
        <contig_pos>65079</contig_pos>
        <strand>+</strand>
        <context>TTTTGGTGGC[C/T]TAGAAATTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGC</left_flank>
        <right_flank>TAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTTGAATTTTCGTTTTTTCAGCACTTTTGAACTTGATTTCGAAAAAAATCGGAAAGATGATTATCAGTGGAGCGTGAATGCATTATCATTAAATAGCACTAGTTTTAAAATCATTTAATGTCAATTTCAGCCATTTTCAGTCTATTTGACAATTTTCAGCTCGTTTTTAGATTTTGTTTCCAATTTTCAGCCAAGACAATTCGCTTAAGATAGTTTTCGTTTTTATTTTTGCAAAATTTGGCAATTTTCAGCATATTTTTGAATTATTTCAAGAAAAAGAAACATCTTTTTCTGAAATATCAAAATTTAAATTCTGAATTTAACACTATCAAAATCCTACAAAATTTTTTTTATTTTCTATCAAATTGTGCCATTTTCAGCCCTTTTTTGAACGTATTCAGGTCATTTCAAAGCCCACTATTTGCCATTTTTTAATTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCACAAGGATTTGCGTTTATGTCATTTTGATGAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGAT</canonical>
            <polymorphic>AAGTTGAATTTTCGTTTTTTCAGCACTTTTGAACTTGATTTCGAAAAAAATCGGAAAGATGATTATCAGTGGAGCGTGAATGCATTATCATTAAATAGCACTAGTTTTAAAATCATTTAATGTCAATTTCAGCCATTTTCAGTCTATTTGACAATTTTCAGCTCGTTTTTAGATTTTGTTTCCAATTTTCAGCCAAGACAATTCGCTTAAGATAGTTTTCGTTTTTATTTTTGCAAAATTTGGCAATTTTCAGCATATTTTTGAATTATTTCAAGAAAAAGAAACATCTTTTTCTGAAATATCAAAATTTAAATTCTGAATTTAACACTATCAAAATCCTACAAAATTTTTTTTATTTTCTATCAAATTGTGCCATTTTCAGCCCTTTTTTGAACGTATTCAGGTCATTTCAAAGCCCACTATTTGCCATTTTTTAATTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCYTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCACAAGGATTTGCGTTTATGTCATTTTGATGAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>392 190 132 86 83 33 31 29 24</canonical_bands>
                <polymorphic_bands>392 190 169 132 33 31 29 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGTATTCAGGTCATTTCAAAG</pcr_primer_p1>
		<pcr_primer_p2>GTGGACTGAATTAGATGTTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACGTATTCAGGTCATTTCAAAGCCCACTATTTGCCATTTTTTAATTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCAC</canonical_amplicon>
		<polymorphic_amplicon>ACGTATTCAGGTCATTTCAAAGCCCACTATTTGCCATTTTTTAATTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCYTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21053</snp_id>
        <super_contig>c012901526.Contig1</super_contig>
        <contig_pos>65385</contig_pos>
        <strand>+</strand>
        <context>AAAATTACAG[A/G]TTACTGTATG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAG</left_flank>
        <right_flank>TTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTAAATTCTGAATTTAACACTATCAAAATCCTACAAAATTTTTTTTATTTTCTATCAAATTGTGCCATTTTCAGCCCTTTTTTGAACGTATTCAGGTCATTTCAAAGCCCACTATTTGCCATTTTTTAATTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCACAAGGATTTGCGTTTATGTCATTTTGATGAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAGTTTTTTGGCGTTTTCAGAATTTTTGAATTTCGAGAGTTTTGAAAATTTGGAATTTCGAAATTTCTTAATTTCTCAGAATTACCGACTTTTTAGAAATTCTCAATTTTTTACAGTTTTAAAAATTTTGGAATTTCAAAATTTCTGAATTTCTGAACTTTTTTTTATTTAAAAAATTTCCAAATTGCGAAAGTTTCAAATTCTTGTAGATTTAGATTTTTGCTAGATTCTTCACTTGACATGACTCACTTGGATGCAAATGGCACGACGCCGTCGTCGGCGTGTTCCCACGCGGGA</canonical>
            <polymorphic>ATTTAAATTCTGAATTTAACACTATCAAAATCCTACAAAATTTTTTTTATTTTCTATCAAATTGTGCCATTTTCAGCCCTTTTTTGAACGTATTCAGGTCATTTCAAAGCCCACTATTTGCCATTTTTTAATTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCACAAGGATTTGCGTTTATGTCATTTTGATGAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGRTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAGTTTTTTGGCGTTTTCAGAATTTTTGAATTTCGAGAGTTTTGAAAATTTGGAATTTCGAAATTTCTTAATTTCTCAGAATTACCGACTTTTTAGAAATTCTCAATTTTTTACAGTTTTAAAAATTTTGGAATTTCAAAATTTCTGAATTTCTGAACTTTTTTTTATTTAAAAAATTTCCAAATTGCGAAAGTTTCAAATTCTTGTAGATTTAGATTTTTGCTAGATTCTTCACTTGACATGACTCACTTGGATGCAAATGGCACGACGCCGTCGTCGGCGTGTTCCCACGCGGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 379 120</canonical_bands>
                <polymorphic_bands>621 379</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATAGGAAGGATTACTGTCACC</pcr_primer_p1>
		<pcr_primer_p2>TGTCGTTTTTCAGTAGATCAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACA</canonical_amplicon>
		<polymorphic_amplicon>GAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGRTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21054</snp_id>
        <super_contig>c012901526.Contig1</super_contig>
        <contig_pos>67225</contig_pos>
        <strand>+</strand>
        <context>AACATACGGA[C/T]ACGAATTGCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTCTCAGCAAAATGTTGGCGAATGGACCAAAATTGAAACATACGGA</left_flank>
        <right_flank>ACGAATTGCGGGTTATTCAACTATGAACGAATGATACTCGATGACAAGGC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATAAGAAATTTTCTCAATAAGAAATTTTTTGGATAGCGTGATGATAAAATGAACTCTAACAATAAGGGATTACAGTAGAGTTTAGGTATTCCGGAATTGTTTCTTAATAAGAATTTGGCATCCCGCCAAAAAGTTTTTTCTTCTCTTCTCGTTTTTTTTCTCTCACTGTCTGCGTCTCTTGTCTCTTTTTTTTCTCTCTTAACCTCCCCGAAAAATATTGGCATCACTTTTTTGTTTTCATTGAAAAAAATTTCTGTGGGATTTTCGATTTTTTTGGAACTTTTTTCGAGAAATTCTTCTTTTTTTTAGAATAATCCTTCTTCAATCCAATTAGAAAAATGAGAAATTTTGGAAATTCTCAATGGAGCGCGTTTGCTTCTTTCTCTTAACTTGAAAAAGTTTCATTTTCAATGGAGCGCACTTGAAATTTTTTTCTCTAAAAATATTTTTTTTCTCAGCAAAATGTTGGCGAATGGACCAAAATTGAAACATACGGACACGAATTGCGGGTTATTCAACTATGAACGAATGATACTCGATGACAAGGCGCCGAATATTTTGGTGAGCATTTTTCTGTTTTTTATGGCCTAGATTCGGGGATTTTGGAGACCTAAATATCTAAAATTTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTTAGAATTTTCGATTTTTTGTTTTTTTTTCTAGAATTTTAGAACTTTAGAATATTAGAATTTTTAGGACTTTTAAAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAGTTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTA</canonical>
            <polymorphic>TAATAAGAAATTTTCTCAATAAGAAATTTTTTGGATAGCGTGATGATAAAATGAACTCTAACAATAAGGGATTACAGTAGAGTTTAGGTATTCCGGAATTGTTTCTTAATAAGAATTTGGCATCCCGCCAAAAAGTTTTTTCTTCTCTTCTCGTTTTTTTTCTCTCACTGTCTGCGTCTCTTGTCTCTTTTTTTTCTCTCTTAACCTCCCCGAAAAATATTGGCATCACTTTTTTGTTTTCATTGAAAAAAATTTCTGTGGGATTTTCGATTTTTTTGGAACTTTTTTCGAGAAATTCTTCTTTTTTTTAGAATAATCCTTCTTCAATCCAATTAGAAAAATGAGAAATTTTGGAAATTCTCAATGGAGCGCGTTTGCTTCTTTCTCTTAACTTGAAAAAGTTTCATTTTCAATGGAGCGCACTTGAAATTTTTTTCTCTAAAAATATTTTTTTTCTCAGCAAAATGTTGGCGAATGGACCAAAATTGAAACATACGGAYACGAATTGCGGGTTATTCAACTATGAACGAATGATACTCGATGACAAGGCGCCGAATATTTTGGTGAGCATTTTTCTGTTTTTTATGGCCTAGATTCGGGGATTTTGGAGACCTAAATATCTAAAATTTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTTAGAATTTTCGATTTTTTGTTTTTTTTTCTAGAATTTTAGAACTTTAGAATATTAGAATTTTTAGGACTTTTAAAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAGTTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>434 162 125 79 65 61 42 32</canonical_bands>
                <polymorphic_bands>434 162 144 125 61 42 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCTTAACTTGAAAAAGTTTCATT</pcr_primer_p1>
		<pcr_primer_p2>TTGAACCAAGTTTTGATCATTT</pcr_primer_p2>
		<pcr_amplicon_size>712</pcr_amplicon_size>
		<canonical_amplicon>TCTCTTAACTTGAAAAAGTTTCATTTTCAATGGAGCGCACTTGAAATTTTTTTCTCTAAAAATATTTTTTTTCTCAGCAAAATGTTGGCGAATGGACCAAAATTGAAACATACGGACACGAATTGCGGGTTATTCAAC</canonical_amplicon>
		<polymorphic_amplicon>TCTCTTAACTTGAAAAAGTTTCATTTTCAATGGAGCGCACTTGAAATTTTTTTCTCTAAAAATATTTTTTTTCTCAGCAAAATGTTGGCGAATGGACCAAAATTGAAACATACGGAYACGAATTGCGGGTTATTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21055</snp_id>
        <super_contig>c012901526.Contig1</super_contig>
        <contig_pos>67174</contig_pos>
        <strand>+</strand>
        <context>CTAAAAATAT[A/T]TTTTTTCTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGTTTCATTTTCAATGGAGCGCACTTGAAATTTTTTTCTCTAAAAATAT</left_flank>
        <right_flank>TTTTTTCTCAGCAAAATGTTGGCGAATGGACCAAAATTGAAACATACGGA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTATTGTAGAATTCAAATTTTATGAATTTTTTGCTAATGAGAAATTTTGCTAATAAGAAATTTTCTCAATAAGAAATTTTTTGGATAGCGTGATGATAAAATGAACTCTAACAATAAGGGATTACAGTAGAGTTTAGGTATTCCGGAATTGTTTCTTAATAAGAATTTGGCATCCCGCCAAAAAGTTTTTTCTTCTCTTCTCGTTTTTTTTCTCTCACTGTCTGCGTCTCTTGTCTCTTTTTTTTCTCTCTTAACCTCCCCGAAAAATATTGGCATCACTTTTTTGTTTTCATTGAAAAAAATTTCTGTGGGATTTTCGATTTTTTTGGAACTTTTTTCGAGAAATTCTTCTTTTTTTTAGAATAATCCTTCTTCAATCCAATTAGAAAAATGAGAAATTTTGGAAATTCTCAATGGAGCGCGTTTGCTTCTTTCTCTTAACTTGAAAAAGTTTCATTTTCAATGGAGCGCACTTGAAATTTTTTTCTCTAAAAATATTTTTTTTCTCAGCAAAATGTTGGCGAATGGACCAAAATTGAAACATACGGACACGAATTGCGGGTTATTCAACTATGAACGAATGATACTCGATGACAAGGCGCCGAATATTTTGGTGAGCATTTTTCTGTTTTTTATGGCCTAGATTCGGGGATTTTGGAGACCTAAATATCTAAAATTTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTTAGAATTTTCGATTTTTTGTTTTTTTTTCTAGAATTTTAGAACTTTAGAATATTAGAATTTTTAGGACTTTTAAAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAGTTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATT</canonical>
            <polymorphic>TTTATTGTAGAATTCAAATTTTATGAATTTTTTGCTAATGAGAAATTTTGCTAATAAGAAATTTTCTCAATAAGAAATTTTTTGGATAGCGTGATGATAAAATGAACTCTAACAATAAGGGATTACAGTAGAGTTTAGGTATTCCGGAATTGTTTCTTAATAAGAATTTGGCATCCCGCCAAAAAGTTTTTTCTTCTCTTCTCGTTTTTTTTCTCTCACTGTCTGCGTCTCTTGTCTCTTTTTTTTCTCTCTTAACCTCCCCGAAAAATATTGGCATCACTTTTTTGTTTTCATTGAAAAAAATTTCTGTGGGATTTTCGATTTTTTTGGAACTTTTTTCGAGAAATTCTTCTTTTTTTTAGAATAATCCTTCTTCAATCCAATTAGAAAAATGAGAAATTTTGGAAATTCTCAATGGAGCGCGTTTGCTTCTTTCTCTTAACTTGAAAAAGTTTCATTTTCAATGGAGCGCACTTGAAATTTTTTTCTCTAAAAATATWTTTTTTCTCAGCAAAATGTTGGCGAATGGACCAAAATTGAAACATACGGACACGAATTGCGGGTTATTCAACTATGAACGAATGATACTCGATGACAAGGCGCCGAATATTTTGGTGAGCATTTTTCTGTTTTTTATGGCCTAGATTCGGGGATTTTGGAGACCTAAATATCTAAAATTTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTTAGAATTTTCGATTTTTTGTTTTTTTTTCTAGAATTTTAGAACTTTAGAATATTAGAATTTTTAGGACTTTTAAAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAGTTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>269 237 228 155 111</canonical_bands>
                <polymorphic_bands>339 269 237 155</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCGAGAAATTCTTCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CATTCGTTCATAGTTGAATAACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCGAGAAATTCTTCTTTTTTTTAGAATAATCCTTCTTCAATCCAATTAGAAAAATGAGAAATTTTGGAAATTCTCAATGGAGCGCGTTTGCTTCTTTCTCTTAACTTGAAAAAGTTTCATTTTCAATGGAGCGCACTTGAAATTTTTTTCTCTAAAAATATTTTTTTTCTCAGCAAAATGTTGGCGAATGGACCAAAATTGAAACATACGGACACGAATTGCGGGTTATTCAACTATGAACGAATG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCGAGAAATTCTTCTTTTTTTTAGAATAATCCTTCTTCAATCCAATTAGAAAAATGAGAAATTTTGGAAATTCTCAATGGAGCGCGTTTGCTTCTTTCTCTTAACTTGAAAAAGTTTCATTTTCAATGGAGCGCACTTGAAATTTTTTTCTCTAAAAATATWTTTTTTCTCAGCAAAATGTTGGCGAATGGACCAAAATTGAAACATACGGACACGAATTGCGGGTTATTCAACTATGAACGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21056</snp_id>
        <super_contig>c012901526.Contig1</super_contig>
        <contig_pos>69753</contig_pos>
        <strand>+</strand>
        <context>CGCTGCTTCT[C/T]CAAAATTAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGAAGAATAGGTTTAACGGTACATGCCACACAGTCTAACGCTGCTTCT</left_flank>
        <right_flank>CAAAATTAGGACAATTCTGAACTTTTTGAAATTTTCAGATTGTCGAAGAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTAAACTAGCTAAAATGGATAATGTCGATCTTGTGAAGTTCTACAAAATTATATAAAATTTGTTTCAAAATGTTGAGTTTGAAGAAAATTATGAGTTGCTATATGTATTTTCACACTTTGAGCCAATTTATCTTGGTTTTTATGAGAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATAATATCACAAATATTTTATCAGTTGACAACTTTTTGATATCTATCAGAGAAACTGAGATAAGTCAAGTCAAAGTTGTACGGTCGGCAGCTGTTGGCTAAGCCTGCCGACTCCCCCTTAACTTTGACCCAATTTATCTGGGTTACTGTAACAGGTATCAAAAAGTAGTGAACCGATAAAATGTTGCTGATAATATGGTAAACGTTTTATCAGTTGACAAAATTTTGATATCTGTCACAGGAACATAGATAAATTGGATCAAAGTTGGAAGAATAGGTTTAACGGTACATGCCACACAGTCTAACGCTGCTTCTCCAAAATTAGGACAATTCTGAACTTTTTGAAATTTTCAGATTGTCGAAGATGCTCCACACTTGTCAACAAAAAACGAAATGGTTGAGGGTTTCGGATACATTCGTACATGTACACCGTACGCCGAACCAGCCATGGACCATATTCAAGCCATCTTCTTCACATTTCATTGTCTTGTGAACGGTGTCAACTGGACCAAAGAAGACTGTTTGGATCATAAGACATGCCTGCCAAGACTCAAAAAAGCGATTTTTGCATTGTTGAAGAAATGGGCCGGGTTGAATAAGGTGAGTTTTGGGGGAGGAAAGAAATGGGCGAGCTACGCGGTCACTTGTTGACTTTGAGCTAATTTATCTCGGCTACTGTAAAAGATATCAAAACGTTGTCAACTAACAAAATGCTTATCATAATATTAGTAACATTTTATCAGTTGATAATTTTTTGATATCTCTGATACGAACCGAGATAATTTTACTCAAAGTGCAAAGTGCAAAGTCAACTCA</canonical>
            <polymorphic>TTTTAAACTAGCTAAAATGGATAATGTCGATCTTGTGAAGTTCTACAAAATTATATAAAATTTGTTTCAAAATGTTGAGTTTGAAGAAAATTATGAGTTGCTATATGTATTTTCACACTTTGAGCCAATTTATCTTGGTTTTTATGAGAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATAATATCACAAATATTTTATCAGTTGACAACTTTTTGATATCTATCAGAGAAACTGAGATAAGTCAAGTCAAAGTTGTACGGTCGGCAGCTGTTGGCTAAGCCTGCCGACTCCCCCTTAACTTTGACCCAATTTATCTGGGTTACTGTAACAGGTATCAAAAAGTAGTGAACCGATAAAATGTTGCTGATAATATGGTAAACGTTTTATCAGTTGACAAAATTTTGATATCTGTCACAGGAACATAGATAAATTGGATCAAAGTTGGAAGAATAGGTTTAACGGTACATGCCACACAGTCTAACGCTGCTTCTYCAAAATTAGGACAATTCTGAACTTTTTGAAATTTTCAGATTGTCGAAGATGCTCCACACTTGTCAACAAAAAACGAAATGGTTGAGGGTTTCGGATACATTCGTACATGTACACCGTACGCCGAACCAGCCATGGACCATATTCAAGCCATCTTCTTCACATTTCATTGTCTTGTGAACGGTGTCAACTGGACCAAAGAAGACTGTTTGGATCATAAGACATGCCTGCCAAGACTCAAAAAAGCGATTTTTGCATTGTTGAAGAAATGGGCCGGGTTGAATAAGGTGAGTTTTGGGGGAGGAAAGAAATGGGCGAGCTACGCGGTCACTTGTTGACTTTGAGCTAATTTATCTCGGCTACTGTAAAAGATATCAAAACGTTGTCAACTAACAAAATGCTTATCATAATATTAGTAACATTTTATCAGTTGATAATTTTTTGATATCTCTGATACGAACCGAGATAATTTTACTCAAAGTGCAAAGTGCAAAGTCAACTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGAAAATTATGAGTTGCTATATGT</pcr_primer_p1>
		<pcr_primer_p2>AGCATCTTCGACAATCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>471</pcr_amplicon_size>
		<canonical_amplicon>GAAGAAAATTATGAGTTGCTATATGTATTTTCACACTTTGAGCCAATTTATCTTGGTTTTTATGAGAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATAATATCACAAATATTTTATCAGTTGACAACTTTTTGATATCTATCAGAGAAACTGAGATAAGTCAAGTCAAAGTTGTACGGTCGGCAGCTGTTGGCTAAGCCTGCCGACTCCCCCTTAACTTTGACCCAATTTATCTGGGTTACTGTAACAGGTATCAAAAAGTAGTGAACCGATAAAATGTTGCTGATAATATGGTAAACGTTTTATCAGTTGACAAAATTTTGATATCTGTCACAGGAACATAGATAAATTGGATCAAAGTTGGAAGAATAGGTTTAACGGTACATGCCACACAGTCTAACGCTGCTTCTCCAAAATTAGGACAATTCTGAACTTTTTGAAATTTTCAGATTGTCGAAGATGCT</canonical_amplicon>
		<polymorphic_amplicon>GAAGAAAATTATGAGTTGCTATATGTATTTTCACACTTTGAGCCAATTTATCTTGGTTTTTATGAGAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATAATATCACAAATATTTTATCAGTTGACAACTTTTTGATATCTATCAGAGAAACTGAGATAAGTCAAGTCAAAGTTGTACGGTCGGCAGCTGTTGGCTAAGCCTGCCGACTCCCCCTTAACTTTGACCCAATTTATCTGGGTTACTGTAACAGGTATCAAAAAGTAGTGAACCGATAAAATGTTGCTGATAATATGGTAAACGTTTTATCAGTTGACAAAATTTTGATATCTGTCACAGGAACATAGATAAATTGGATCAAAGTTGGAAGAATAGGTTTAACGGTACATGCCACACAGTCTAACGCTGCTTCTYCAAAATTAGGACAATTCTGAACTTTTTGAAATTTTCAGATTGTCGAAGATGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21057</snp_id>
        <super_contig>c013000986.Contig1</super_contig>
        <contig_pos>40082</contig_pos>
        <strand>+</strand>
        <context>TCGTTACATG[A/G]AAGCTTTGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATACGAGTAGGAGAGACGGTAGGCAATATGCCGATTCGTCGTTACATG</left_flank>
        <right_flank>AAGCTTTGTGCTAGTTTTATGCCGGACTTGAATGCGACTAGTTTAACTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTAACGGTCTTCTCTTCTCCGAAATCTATTTAAATCCTTGTTAACTTCTCATTTTCCTGCAATTCGACCCATTGTCACAGGTCCCTGATCAAAAATTGTATCACTTGCCGAATTTCTCATTTTAAGGCCTTAATAACATTTTTATCGCCCTCATTCCCTCTTCAAAAATGAACGATTCCTTTTCGAGATTTTTTTCTATTGGTATCTGTTTACGGTCTGCAGTTCCGATCGATTCATTCTGTTCTCACTTGTTTGTTTCATCGTTTTTTTTTCTTTTTCTGCTTTCAATGCCATATCGTCAATCTATCTATCAAAAACAAGGCAAGAGAGGAAAGTAAGAGACAGCCTTCGAGTGTGCTGCTCTGTGTCTCTTCATTTCATACGCTCTCTTTGCCGGTCTCTGCTCCTCTCACCGTCACGTGTGATTAGCGCCAGCACAAAATGTATAAATACGAGTAGGAGAGACGGTAGGCAATATGCCGATTCGTCGTTACATGAAAGCTTTGTGCTAGTTTTATGCCGGACTTGAATGCGACTAGTTTAACTTTTTTTGAGTTTTGGAGGATCCCGGATTTGGATTTCTCATGCTAGCGCTTGTTATTCTTCAGCAGTTTTTTGTGAAACTTCGAGAAAATCGTTCCAGCAATAGCAAAAATCGAAACGAAGTTCGATCTTTATTTGGCCGCTGGCGGGAGAGGGCTTCCATCGTAAACAACCTTCATACAGCAGTTGTATTTGTCATTCGGAAATTTCAGTGACGCTGCTGTCTTTAAACCTTTTTTCGTCTTGCTTCCCACATCTCGATCAAATAGCTGTCAATCGCCAATCGTTTTCCTGTTGATAAAATATCGTTCTTCTTTCTCTTCTTCAAACTTTCTTCAAGCATTTTTACGCACAACCTTATTATTCAACTGTTTTCAGACTATCACTTGATAAGATGTCGTCGAACGCTGAAGCTATGGCTACCGCTTTCGAGCAAGACGGAGGACCGGTATGTT</canonical>
            <polymorphic>GACTAACGGTCTTCTCTTCTCCGAAATCTATTTAAATCCTTGTTAACTTCTCATTTTCCTGCAATTCGACCCATTGTCACAGGTCCCTGATCAAAAATTGTATCACTTGCCGAATTTCTCATTTTAAGGCCTTAATAACATTTTTATCGCCCTCATTCCCTCTTCAAAAATGAACGATTCCTTTTCGAGATTTTTTTCTATTGGTATCTGTTTACGGTCTGCAGTTCCGATCGATTCATTCTGTTCTCACTTGTTTGTTTCATCGTTTTTTTTTCTTTTTCTGCTTTCAATGCCATATCGTCAATCTATCTATCAAAAACAAGGCAAGAGAGGAAAGTAAGAGACAGCCTTCGAGTGTGCTGCTCTGTGTCTCTTCATTTCATACGCTCTCTTTGCCGGTCTCTGCTCCTCTCACCGTCACGTGTGATTAGCGCCAGCACAAAATGTATAAATACGAGTAGGAGAGACGGTAGGCAATATGCCGATTCGTCGTTACATGRAAGCTTTGTGCTAGTTTTATGCCGGACTTGAATGCGACTAGTTTAACTTTTTTTGAGTTTTGGAGGATCCCGGATTTGGATTTCTCATGCTAGCGCTTGTTATTCTTCAGCAGTTTTTTGTGAAACTTCGAGAAAATCGTTCCAGCAATAGCAAAAATCGAAACGAAGTTCGATCTTTATTTGGCCGCTGGCGGGAGAGGGCTTCCATCGTAAACAACCTTCATACAGCAGTTGTATTTGTCATTCGGAAATTTCAGTGACGCTGCTGTCTTTAAACCTTTTTTCGTCTTGCTTCCCACATCTCGATCAAATAGCTGTCAATCGCCAATCGTTTTCCTGTTGATAAAATATCGTTCTTCTTTCTCTTCTTCAAACTTTCTTCAAGCATTTTTACGCACAACCTTATTATTCAACTGTTTTCAGACTATCACTTGATAAGATGTCGTCGAACGCTGAAGCTATGGCTACCGCTTTCGAGCAAGACGGAGGACCGGTATGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTCTTCATTTCATACGCTCT</pcr_primer_p1>
		<pcr_primer_p2>AAAAACTGCTGAAGAATAACAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCTCTTCATTTCATACGCTCTCTTTGCCGGTCTCTGCTCCTCTCACCGTCACGTGTGATTAGCGCCAGCACAAAATGTATAAATACGAGTAGGAGAGACGGTAGGCAATATGCCGATTCGTCGTTACATGAAAGCTTTGTGCTAGTTTTATGCCGGACTTGAATGCGACTAGTTTAACTTTTTTTGAGTTTTGGAGGATCCCGGATTTGGATTTCTCATGCTAGCGCTTGTTATTCTTCAGCAGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GTCTCTTCATTTCATACGCTCTCTTTGCCGGTCTCTGCTCCTCTCACCGTCACGTGTGATTAGCGCCAGCACAAAATGTATAAATACGAGTAGGAGAGACGGTAGGCAATATGCCGATTCGTCGTTACATGRAAGCTTTGTGCTAGTTTTATGCCGGACTTGAATGCGACTAGTTTAACTTTTTTTGAGTTTTGGAGGATCCCGGATTTGGATTTCTCATGCTAGCGCTTGTTATTCTTCAGCAGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21058</snp_id>
        <super_contig>c013000986.Contig1</super_contig>
        <contig_pos>41419</contig_pos>
        <strand>+</strand>
        <context>YTKSATTRAT[G/T]TTTCAGAGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAACTGCATTAAT</left_flank>
        <right_flank>TTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGACGATGGCCGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATCCAAACTCAATGCCGACTGCCCTTCGAACCGTTCCACACCCCGCTACCCGTGTTTTTAATTTCTTTTTTTACCCGTTTTTTGTAAAATTGTAAATGCCAGGCTAGCCTATCTAGCGACCAATTTTTGTAATGTTATTGTAAAAAGAACCCTGGCTATGTTCACTACTGAGTAATGCCTTTTCCACATCAACGCTTTTTCACTTTGAATAAACTTTTAAAAGAAGACACTGTACCACTGATCACACCGAATATCGTAATTTTCGAAAAATTGATACTTGAAAACTGATGTTATTGCTCAGCAAAACAGATGAATACCATATCCAAAGTTACGTTTCAGACAAATGTCTCGTCCTATTGGATATATCGGATACGAGTTTGGTGATGATGAAATGTTTATGCAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAACTGCATTAATTTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGACGATGGCCGAAGACGAGGAACCCGTACCAACAAAGTCATTGAACTTCGAAGAAGCATTCCAGAGCAACACTCTTCCAGAAGGCTACAAATCTCCATACAAAACGATTCCATTCCTCACAGAAGACGTCGTTACAGTTAACAGTAAGATACTACTATTTCTCGATCCTTCTTATTCTATGCTTTCAGCCATGAGTCATTGTCCACCAGATGACATCGCGAAACTCATTCGAAACATTCAGAACTCAGTCTACACACTCGGATTAGATGAAGCACGTCAATGCCGACGTGGAAAACTTCTCGATGTTTTGAAGTCAAACACACCGACAGACCACTTTCAGCAGCAAACGCCACCACAGAAATCTTCTCCAATTCCTACTGATAATCATTAAAAACATGTATCATGATCTCACGTATGATTCATAACTTATATAATTTTCATTTTGACATGAATGTTACAAGAA</canonical>
            <polymorphic>GAATCCAAACTCAATGCCGACTGCCCTTCGAACCGTTCCACACCCCGCTACCCGTGTTTTTAATTTCTTTTTTTACCCGTTTTTTGTAAAATTGTAAATGCCAGGCTAGCCTATCTAGCGACCAATTTTTGTAATGTTATTGTAAAAAGAACCCTGGCTATGTTCACTACTGAGTAATGCCTTTTCCACATCAACGCTTTTTCACTTTGAATAAACTTTTAAAAGAAGACACTGTACCACTGATCACACCGAATATCGTAATTTTCGAAAAATTGATACTTGAAAACTGATGTTATTGCTCAGCAAAACAGATGAATACCATATCCAAAGTTACGTTTCAGACAAATGTCTCGTCCTATTGGATATATCGGATACGAGTTTGGTGATGATGAAATGTTTATGCAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAACTGCATTAATKTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGACGATGGCCGAAGACGAGGAACCCGTACCAACAAAGTCATTGAACTTCGAAGAAGCATTCCAGAGCAACACTCTTCCAGAAGGCTACAAATCTCCATACAAAACGATTCCATTCCTCACAGAAGACGTCGTTACAGTTAACAGTAAGATACTACTATTTCTCGATCCTTCTTATTCTATGCTTTCAGCCATGAGTCATTGTCCACCAGATGACATCGCGAAACTCATTCGAAACATTCAGAACTCAGTCTACACACTCGGATTAGATGAAGCACGTCAATGCCGACGTGGAAAACTTCTCGATGTTTTGAAGTCAAACACACCGACAGACCACTTTCAGCAGCAAACGCCACCACAGAAATCTTCTCCAATTCCTACTGATAATCATTAAAAACATGTATCATGATCTCACGTATGATTCATAACTTATATAATTTTCATTTTGACATGAATGTTACAAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>410 178 136 63 61 37 34 31 28 11 11</canonical_bands>
                <polymorphic_bands>447 178 136 63 61 34 31 28 11 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACAGATGATTAATGATGAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATCGTTTTGTATGGAGATTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAACTGCATTAATTTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGACGATGGCCGAAGACGAGGAACCCGTACCAACAAAGTCATTGAACTTCGAAGAAGCATTCCAGAGCAACACTCTTCCAGAAGGCTACAAATCTCCATACAAAACGAT</canonical_amplicon>
		<polymorphic_amplicon>CAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAACTGCATTAATKTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGACGATGGCCGAAGACGAGGAACCCGTACCAACAAAGTCATTGAACTTCGAAGAAGCATTCCAGAGCAACACTCTTCCAGAAGGCTACAAATCTCCATACAAAACGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21059</snp_id>
        <super_contig>c013000986.Contig1</super_contig>
        <contig_pos>41416</contig_pos>
        <strand>+</strand>
        <context>TRWYTKSATT[A/G]ATKTTTCAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAACTGCATT</left_flank>
        <right_flank>ATTTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGACGATGGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGAATCCAAACTCAATGCCGACTGCCCTTCGAACCGTTCCACACCCCGCTACCCGTGTTTTTAATTTCTTTTTTTACCCGTTTTTTGTAAAATTGTAAATGCCAGGCTAGCCTATCTAGCGACCAATTTTTGTAATGTTATTGTAAAAAGAACCCTGGCTATGTTCACTACTGAGTAATGCCTTTTCCACATCAACGCTTTTTCACTTTGAATAAACTTTTAAAAGAAGACACTGTACCACTGATCACACCGAATATCGTAATTTTCGAAAAATTGATACTTGAAAACTGATGTTATTGCTCAGCAAAACAGATGAATACCATATCCAAAGTTACGTTTCAGACAAATGTCTCGTCCTATTGGATATATCGGATACGAGTTTGGTGATGATGAAATGTTTATGCAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAACTGCATTAATTTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGACGATGGCCGAAGACGAGGAACCCGTACCAACAAAGTCATTGAACTTCGAAGAAGCATTCCAGAGCAACACTCTTCCAGAAGGCTACAAATCTCCATACAAAACGATTCCATTCCTCACAGAAGACGTCGTTACAGTTAACAGTAAGATACTACTATTTCTCGATCCTTCTTATTCTATGCTTTCAGCCATGAGTCATTGTCCACCAGATGACATCGCGAAACTCATTCGAAACATTCAGAACTCAGTCTACACACTCGGATTAGATGAAGCACGTCAATGCCGACGTGGAAAACTTCTCGATGTTTTGAAGTCAAACACACCGACAGACCACTTTCAGCAGCAAACGCCACCACAGAAATCTTCTCCAATTCCTACTGATAATCATTAAAAACATGTATCATGATCTCACGTATGATTCATAACTTATATAATTTTCATTTTGACATGAATGTTACAA</canonical>
            <polymorphic>ATCGAATCCAAACTCAATGCCGACTGCCCTTCGAACCGTTCCACACCCCGCTACCCGTGTTTTTAATTTCTTTTTTTACCCGTTTTTTGTAAAATTGTAAATGCCAGGCTAGCCTATCTAGCGACCAATTTTTGTAATGTTATTGTAAAAAGAACCCTGGCTATGTTCACTACTGAGTAATGCCTTTTCCACATCAACGCTTTTTCACTTTGAATAAACTTTTAAAAGAAGACACTGTACCACTGATCACACCGAATATCGTAATTTTCGAAAAATTGATACTTGAAAACTGATGTTATTGCTCAGCAAAACAGATGAATACCATATCCAAAGTTACGTTTCAGACAAATGTCTCGTCCTATTGGATATATCGGATACGAGTTTGGTGATGATGAAATGTTTATGCAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAACTGCATTRATTTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGACGATGGCCGAAGACGAGGAACCCGTACCAACAAAGTCATTGAACTTCGAAGAAGCATTCCAGAGCAACACTCTTCCAGAAGGCTACAAATCTCCATACAAAACGATTCCATTCCTCACAGAAGACGTCGTTACAGTTAACAGTAAGATACTACTATTTCTCGATCCTTCTTATTCTATGCTTTCAGCCATGAGTCATTGTCCACCAGATGACATCGCGAAACTCATTCGAAACATTCAGAACTCAGTCTACACACTCGGATTAGATGAAGCACGTCAATGCCGACGTGGAAAACTTCTCGATGTTTTGAAGTCAAACACACCGACAGACCACTTTCAGCAGCAAACGCCACCACAGAAATCTTCTCCAATTCCTACTGATAATCATTAAAAACATGTATCATGATCTCACGTATGATTCATAACTTATATAATTTTCATTTTGACATGAATGTTACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 416 49 33</canonical_bands>
                <polymorphic_bands>535 416 49</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>250 194 180 159 72 63 49 33</canonical_bands>
                <polymorphic_bands>250 213 194 159 72 63 49</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>410 178 136 64 63 37 34 28 28 11 11</canonical_bands>
                <polymorphic_bands>447 178 136 64 63 34 28 28 11 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACAGATGATTAATGATGAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATCGTTTTGTATGGAGATTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAACTGCATTAATTTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGACGATGGCCGAAGACGAGGAACCCGTACCAACAAAGTCATTGAACTTCGAAGAAGCATTCCAGAGCAACACTCTTCCAGAAGGCTACAAATCTCCATACAAAACGAT</canonical_amplicon>
		<polymorphic_amplicon>CAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAACTGCATTRATTTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGACGATGGCCGAAGACGAGGAACCCGTACCAACAAAGTCATTGAACTTCGAAGAAGCATTCCAGAGCAACACTCTTCCAGAAGGCTACAAATCTCCATACAAAACGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21062</snp_id>
        <super_contig>c013000986.Contig1</super_contig>
        <contig_pos>41412</contig_pos>
        <strand>+</strand>
        <context>AAAATRWYTK[C/G]ATTRATKTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAACTG</left_flank>
        <right_flank>ATTAATTTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGACGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTATCGAATCCAAACTCAATGCCGACTGCCCTTCGAACCGTTCCACACCCCGCTACCCGTGTTTTTAATTTCTTTTTTTACCCGTTTTTTGTAAAATTGTAAATGCCAGGCTAGCCTATCTAGCGACCAATTTTTGTAATGTTATTGTAAAAAGAACCCTGGCTATGTTCACTACTGAGTAATGCCTTTTCCACATCAACGCTTTTTCACTTTGAATAAACTTTTAAAAGAAGACACTGTACCACTGATCACACCGAATATCGTAATTTTCGAAAAATTGATACTTGAAAACTGATGTTATTGCTCAGCAAAACAGATGAATACCATATCCAAAGTTACGTTTCAGACAAATGTCTCGTCCTATTGGATATATCGGATACGAGTTTGGTGATGATGAAATGTTTATGCAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAACTGCATTAATTTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGACGATGGCCGAAGACGAGGAACCCGTACCAACAAAGTCATTGAACTTCGAAGAAGCATTCCAGAGCAACACTCTTCCAGAAGGCTACAAATCTCCATACAAAACGATTCCATTCCTCACAGAAGACGTCGTTACAGTTAACAGTAAGATACTACTATTTCTCGATCCTTCTTATTCTATGCTTTCAGCCATGAGTCATTGTCCACCAGATGACATCGCGAAACTCATTCGAAACATTCAGAACTCAGTCTACACACTCGGATTAGATGAAGCACGTCAATGCCGACGTGGAAAACTTCTCGATGTTTTGAAGTCAAACACACCGACAGACCACTTTCAGCAGCAAACGCCACCACAGAAATCTTCTCCAATTCCTACTGATAATCATTAAAAACATGTATCATGATCTCACGTATGATTCATAACTTATATAATTTTCATTTTGACATGAATGTT</canonical>
            <polymorphic>TCCTATCGAATCCAAACTCAATGCCGACTGCCCTTCGAACCGTTCCACACCCCGCTACCCGTGTTTTTAATTTCTTTTTTTACCCGTTTTTTGTAAAATTGTAAATGCCAGGCTAGCCTATCTAGCGACCAATTTTTGTAATGTTATTGTAAAAAGAACCCTGGCTATGTTCACTACTGAGTAATGCCTTTTCCACATCAACGCTTTTTCACTTTGAATAAACTTTTAAAAGAAGACACTGTACCACTGATCACACCGAATATCGTAATTTTCGAAAAATTGATACTTGAAAACTGATGTTATTGCTCAGCAAAACAGATGAATACCATATCCAAAGTTACGTTTCAGACAAATGTCTCGTCCTATTGGATATATCGGATACGAGTTTGGTGATGATGAAATGTTTATGCAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAACTGSATTAATTTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGACGATGGCCGAAGACGAGGAACCCGTACCAACAAAGTCATTGAACTTCGAAGAAGCATTCCAGAGCAACACTCTTCCAGAAGGCTACAAATCTCCATACAAAACGATTCCATTCCTCACAGAAGACGTCGTTACAGTTAACAGTAAGATACTACTATTTCTCGATCCTTCTTATTCTATGCTTTCAGCCATGAGTCATTGTCCACCAGATGACATCGCGAAACTCATTCGAAACATTCAGAACTCAGTCTACACACTCGGATTAGATGAAGCACGTCAATGCCGACGTGGAAAACTTCTCGATGTTTTGAAGTCAAACACACCGACAGACCACTTTCAGCAGCAAACGCCACCACAGAAATCTTCTCCAATTCCTACTGATAATCATTAAAAACATGTATCATGATCTCACGTATGATTCATAACTTATATAATTTTCATTTTGACATGAATGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>501 409 65 25</canonical_bands>
                <polymorphic_bands>526 409 65</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACAGATGATTAATGATGAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATCGTTTTGTATGGAGATTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAACTGCATTAATTTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGACGATGGCCGAAGACGAGGAACCCGTACCAACAAAGTCATTGAACTTCGAAGAAGCATTCCAGAGCAACACTCTTCCAGAAGGCTACAAATCTCCATACAAAACGAT</canonical_amplicon>
		<polymorphic_amplicon>CAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAACTGSATTAATTTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGACGATGGCCGAAGACGAGGAACCCGTACCAACAAAGTCATTGAACTTCGAAGAAGCATTCCAGAGCAACACTCTTCCAGAAGGCTACAAATCTCCATACAAAACGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21063</snp_id>
        <super_contig>c013000986.Contig1</super_contig>
        <contig_pos>41411</contig_pos>
        <strand>+</strand>
        <context>AAAAATRWYT[G/T]SATTRATKTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAACT</left_flank>
        <right_flank>CATTAATTTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGACGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCTATCGAATCCAAACTCAATGCCGACTGCCCTTCGAACCGTTCCACACCCCGCTACCCGTGTTTTTAATTTCTTTTTTTACCCGTTTTTTGTAAAATTGTAAATGCCAGGCTAGCCTATCTAGCGACCAATTTTTGTAATGTTATTGTAAAAAGAACCCTGGCTATGTTCACTACTGAGTAATGCCTTTTCCACATCAACGCTTTTTCACTTTGAATAAACTTTTAAAAGAAGACACTGTACCACTGATCACACCGAATATCGTAATTTTCGAAAAATTGATACTTGAAAACTGATGTTATTGCTCAGCAAAACAGATGAATACCATATCCAAAGTTACGTTTCAGACAAATGTCTCGTCCTATTGGATATATCGGATACGAGTTTGGTGATGATGAAATGTTTATGCAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAACTGCATTAATTTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGACGATGGCCGAAGACGAGGAACCCGTACCAACAAAGTCATTGAACTTCGAAGAAGCATTCCAGAGCAACACTCTTCCAGAAGGCTACAAATCTCCATACAAAACGATTCCATTCCTCACAGAAGACGTCGTTACAGTTAACAGTAAGATACTACTATTTCTCGATCCTTCTTATTCTATGCTTTCAGCCATGAGTCATTGTCCACCAGATGACATCGCGAAACTCATTCGAAACATTCAGAACTCAGTCTACACACTCGGATTAGATGAAGCACGTCAATGCCGACGTGGAAAACTTCTCGATGTTTTGAAGTCAAACACACCGACAGACCACTTTCAGCAGCAAACGCCACCACAGAAATCTTCTCCAATTCCTACTGATAATCATTAAAAACATGTATCATGATCTCACGTATGATTCATAACTTATATAATTTTCATTTTGACATGAATGT</canonical>
            <polymorphic>TTCCTATCGAATCCAAACTCAATGCCGACTGCCCTTCGAACCGTTCCACACCCCGCTACCCGTGTTTTTAATTTCTTTTTTTACCCGTTTTTTGTAAAATTGTAAATGCCAGGCTAGCCTATCTAGCGACCAATTTTTGTAATGTTATTGTAAAAAGAACCCTGGCTATGTTCACTACTGAGTAATGCCTTTTCCACATCAACGCTTTTTCACTTTGAATAAACTTTTAAAAGAAGACACTGTACCACTGATCACACCGAATATCGTAATTTTCGAAAAATTGATACTTGAAAACTGATGTTATTGCTCAGCAAAACAGATGAATACCATATCCAAAGTTACGTTTCAGACAAATGTCTCGTCCTATTGGATATATCGGATACGAGTTTGGTGATGATGAAATGTTTATGCAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAACTKCATTAATTTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGACGATGGCCGAAGACGAGGAACCCGTACCAACAAAGTCATTGAACTTCGAAGAAGCATTCCAGAGCAACACTCTTCCAGAAGGCTACAAATCTCCATACAAAACGATTCCATTCCTCACAGAAGACGTCGTTACAGTTAACAGTAAGATACTACTATTTCTCGATCCTTCTTATTCTATGCTTTCAGCCATGAGTCATTGTCCACCAGATGACATCGCGAAACTCATTCGAAACATTCAGAACTCAGTCTACACACTCGGATTAGATGAAGCACGTCAATGCCGACGTGGAAAACTTCTCGATGTTTTGAAGTCAAACACACCGACAGACCACTTTCAGCAGCAAACGCCACCACAGAAATCTTCTCCAATTCCTACTGATAATCATTAAAAACATGTATCATGATCTCACGTATGATTCATAACTTATATAATTTTCATTTTGACATGAATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 410 65 25</canonical_bands>
                <polymorphic_bands>525 410 65</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACAGATGATTAATGATGAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATCGTTTTGTATGGAGATTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAACTGCATTAATTTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGACGATGGCCGAAGACGAGGAACCCGTACCAACAAAGTCATTGAACTTCGAAGAAGCATTCCAGAGCAACACTCTTCCAGAAGGCTACAAATCTCCATACAAAACGAT</canonical_amplicon>
		<polymorphic_amplicon>CAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAACTKCATTAATTTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGACGATGGCCGAAGACGAGGAACCCGTACCAACAAAGTCATTGAACTTCGAAGAAGCATTCCAGAGCAACACTCTTCCAGAAGGCTACAAATCTCCATACAAAACGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21064</snp_id>
        <super_contig>c013000986.Contig1</super_contig>
        <contig_pos>41409</contig_pos>
        <strand>+</strand>
        <context>TAAAAAATRW[C/T]TKSATTRATK</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAA</left_flank>
        <right_flank>TGCATTAATTTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTCCTATCGAATCCAAACTCAATGCCGACTGCCCTTCGAACCGTTCCACACCCCGCTACCCGTGTTTTTAATTTCTTTTTTTACCCGTTTTTTGTAAAATTGTAAATGCCAGGCTAGCCTATCTAGCGACCAATTTTTGTAATGTTATTGTAAAAAGAACCCTGGCTATGTTCACTACTGAGTAATGCCTTTTCCACATCAACGCTTTTTCACTTTGAATAAACTTTTAAAAGAAGACACTGTACCACTGATCACACCGAATATCGTAATTTTCGAAAAATTGATACTTGAAAACTGATGTTATTGCTCAGCAAAACAGATGAATACCATATCCAAAGTTACGTTTCAGACAAATGTCTCGTCCTATTGGATATATCGGATACGAGTTTGGTGATGATGAAATGTTTATGCAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAACTGCATTAATTTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGACGATGGCCGAAGACGAGGAACCCGTACCAACAAAGTCATTGAACTTCGAAGAAGCATTCCAGAGCAACACTCTTCCAGAAGGCTACAAATCTCCATACAAAACGATTCCATTCCTCACAGAAGACGTCGTTACAGTTAACAGTAAGATACTACTATTTCTCGATCCTTCTTATTCTATGCTTTCAGCCATGAGTCATTGTCCACCAGATGACATCGCGAAACTCATTCGAAACATTCAGAACTCAGTCTACACACTCGGATTAGATGAAGCACGTCAATGCCGACGTGGAAAACTTCTCGATGTTTTGAAGTCAAACACACCGACAGACCACTTTCAGCAGCAAACGCCACCACAGAAATCTTCTCCAATTCCTACTGATAATCATTAAAAACATGTATCATGATCTCACGTATGATTCATAACTTATATAATTTTCATTTTGACATGAAT</canonical>
            <polymorphic>ACTTCCTATCGAATCCAAACTCAATGCCGACTGCCCTTCGAACCGTTCCACACCCCGCTACCCGTGTTTTTAATTTCTTTTTTTACCCGTTTTTTGTAAAATTGTAAATGCCAGGCTAGCCTATCTAGCGACCAATTTTTGTAATGTTATTGTAAAAAGAACCCTGGCTATGTTCACTACTGAGTAATGCCTTTTCCACATCAACGCTTTTTCACTTTGAATAAACTTTTAAAAGAAGACACTGTACCACTGATCACACCGAATATCGTAATTTTCGAAAAATTGATACTTGAAAACTGATGTTATTGCTCAGCAAAACAGATGAATACCATATCCAAAGTTACGTTTCAGACAAATGTCTCGTCCTATTGGATATATCGGATACGAGTTTGGTGATGATGAAATGTTTATGCAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAAYTGCATTAATTTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGACGATGGCCGAAGACGAGGAACCCGTACCAACAAAGTCATTGAACTTCGAAGAAGCATTCCAGAGCAACACTCTTCCAGAAGGCTACAAATCTCCATACAAAACGATTCCATTCCTCACAGAAGACGTCGTTACAGTTAACAGTAAGATACTACTATTTCTCGATCCTTCTTATTCTATGCTTTCAGCCATGAGTCATTGTCCACCAGATGACATCGCGAAACTCATTCGAAACATTCAGAACTCAGTCTACACACTCGGATTAGATGAAGCACGTCAATGCCGACGTGGAAAACTTCTCGATGTTTTGAAGTCAAACACACCGACAGACCACTTTCAGCAGCAAACGCCACCACAGAAATCTTCTCCAATTCCTACTGATAATCATTAAAAACATGTATCATGATCTCACGTATGATTCATAACTTATATAATTTTCATTTTGACATGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACAGATGATTAATGATGAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATCGTTTTGTATGGAGATTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAACTGCATTAATTTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGACGATGGCCGAAGACGAGGAACCCGTACCAACAAAGTCATTGAACTTCGAAGAAGCATTCCAGAGCAACACTCTTCCAGAAGGCTACAAATCTCCATACAAAACGAT</canonical_amplicon>
		<polymorphic_amplicon>CAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAAYTGCATTAATTTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGACGATGGCCGAAGACGAGGAACCCGTACCAACAAAGTCATTGAACTTCGAAGAAGCATTCCAGAGCAACACTCTTCCAGAAGGCTACAAATCTCCATACAAAACGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21065</snp_id>
        <super_contig>c013000986.Contig1</super_contig>
        <contig_pos>40922</contig_pos>
        <strand>+</strand>
        <context>TTCCTATCGA[A/C]TCCAAACTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGTTTACGTACCGTTAACCTGAACCATTTCAGAATTCAACTTCCTATCGA</left_flank>
        <right_flank>TCCAAACTCAATGCCGACTGCCCTTCGAACCGTTCCACACCCCGCTACCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATAAAATATCGTTCTTCTTTCTCTTCTTCAAACTTTCTTCAAGCATTTTTACGCACAACCTTATTATTCAACTGTTTTCAGACTATCACTTGATAAGATGTCGTCGAACGCTGAAGCTATGGCTACCGCTTTCGAGCAAGACGGAGGACCGGTATGTTGATTTCGGAAAATTCAAAGCTTCCAAAATTGAGCAATAGATCAGGGTGCTATGCCACCTCCGGTCAAAACTCTGAACTTTTGGATGCCAAACTTGCTTTAGCCAAGATTTTTCTTTCAGGATCTCAGTGCCGGATCTGGAAAGCGTACCAAGGCCGAAAGAGTGGAGCACAAGCATTCCTCGCAACCAGGAGGCGACACTCGCAAGGTCGTTCAGACTGCCAGCAATGGAGAGGCCAAAAGAAAAGAGAAGTGGTGAGTGACCCAGACTGTGCACTTAGTGCGCGCGAGTGTTTACGTACCGTTAACCTGAACCATTTCAGAATTCAACTTCCTATCGAATCCAAACTCAATGCCGACTGCCCTTCGAACCGTTCCACACCCCGCTACCCGTGTTTTTAATTTCTTTTTTTACCCGTTTTTTGTAAAATTGTAAATGCCAGGCTAGCCTATCTAGCGACCAATTTTTGTAATGTTATTGTAAAAAGAACCCTGGCTATGTTCACTACTGAGTAATGCCTTTTCCACATCAACGCTTTTTCACTTTGAATAAACTTTTAAAAGAAGACACTGTACCACTGATCACACCGAATATCGTAATTTTCGAAAAATTGATACTTGAAAACTGATGTTATTGCTCAGCAAAACAGATGAATACCATATCCAAAGTTACGTTTCAGACAAATGTCTCGTCCTATTGGATATATCGGATACGAGTTTGGTGATGATGAAATGTTTATGCAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAACTGCATTAATTTTT</canonical>
            <polymorphic>TGATAAAATATCGTTCTTCTTTCTCTTCTTCAAACTTTCTTCAAGCATTTTTACGCACAACCTTATTATTCAACTGTTTTCAGACTATCACTTGATAAGATGTCGTCGAACGCTGAAGCTATGGCTACCGCTTTCGAGCAAGACGGAGGACCGGTATGTTGATTTCGGAAAATTCAAAGCTTCCAAAATTGAGCAATAGATCAGGGTGCTATGCCACCTCCGGTCAAAACTCTGAACTTTTGGATGCCAAACTTGCTTTAGCCAAGATTTTTCTTTCAGGATCTCAGTGCCGGATCTGGAAAGCGTACCAAGGCCGAAAGAGTGGAGCACAAGCATTCCTCGCAACCAGGAGGCGACACTCGCAAGGTCGTTCAGACTGCCAGCAATGGAGAGGCCAAAAGAAAAGAGAAGTGGTGAGTGACCCAGACTGTGCACTTAGTGCGCGCGAGTGTTTACGTACCGTTAACCTGAACCATTTCAGAATTCAACTTCCTATCGAMTCCAAACTCAATGCCGACTGCCCTTCGAACCGTTCCACACCCCGCTACCCGTGTTTTTAATTTCTTTTTTTACCCGTTTTTTGTAAAATTGTAAATGCCAGGCTAGCCTATCTAGCGACCAATTTTTGTAATGTTATTGTAAAAAGAACCCTGGCTATGTTCACTACTGAGTAATGCCTTTTCCACATCAACGCTTTTTCACTTTGAATAAACTTTTAAAAGAAGACACTGTACCACTGATCACACCGAATATCGTAATTTTCGAAAAATTGATACTTGAAAACTGATGTTATTGCTCAGCAAAACAGATGAATACCATATCCAAAGTTACGTTTCAGACAAATGTCTCGTCCTATTGGATATATCGGATACGAGTTTGGTGATGATGAAATGTTTATGCAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAACTGCATTAATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAAAAGAGAAGTGGTGAGT</pcr_primer_p1>
		<pcr_primer_p2>ACAATAACATTACAAAAATTGGTC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAAAAGAGAAGTGGTGAGTGACCCAGACTGTGCACTTAGTGCGCGCGAGTGTTTACGTACCGTTAACCTGAACCATTTCAGAATTCAACTTCCTATCGAATCCAAACTCAATGCCGACTGCCCTTCGAACCGTTCCACACCCCGCTACCCGTGTTTTTAATTTCTTTTTTTACCCGTTTTTTGTAAAATTGTAAATGCCAGGCTAGCCTATCTAGCGACCAATTTTTGTAATGTTATTGT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAAAAGAGAAGTGGTGAGTGACCCAGACTGTGCACTTAGTGCGCGCGAGTGTTTACGTACCGTTAACCTGAACCATTTCAGAATTCAACTTCCTATCGAMTCCAAACTCAATGCCGACTGCCCTTCGAACCGTTCCACACCCCGCTACCCGTGTTTTTAATTTCTTTTTTTACCCGTTTTTTGTAAAATTGTAAATGCCAGGCTAGCCTATCTAGCGACCAATTTTTGTAATGTTATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21073</snp_id>
        <super_contig>c013000986.Contig1</super_contig>
        <contig_pos>53770</contig_pos>
        <strand>+</strand>
        <context>TTTTTAACAA[A/T]TTCTAATAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CACAGAATTTGTTGTTGAGCTCACGAAATGATGCTTGAGCTTTTTAACAA</left_flank>
        <right_flank>TTCTAATAACTGATTTGCTAGAAATAAATGCTTCTGTAGAACTGTCCGCG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTTCTTTATTTTAACTCATTCATCTCACTATCAGTATTTATAAGAGATGCCAGAAAGAAGTGAAGAATTCAATATTGTTTGATATCTCCTAACAAAACGGAGACAATTGAGGTTTTAGAGCAAGTTAAAGGTGGCGTTTTGAAGTTTCAACTTACACTGTAGTCATTCATTCGGCTGACGACGTGGTTCATTTCTCGAATCACATGATAATGAGCGCTGACGGTCTCATAAATATGGTCCAACACTTCGAACCTATTCGAATCAGATGATTGGATATTCAAGCTTGGAAACGAACTGAAAAATCAACAAAATTGCGAACTATTTTCTGATCGAACATACCCAACAATATGTTCGAACTGGACATTCAAACTGTTTCCAAGAGACGAATCAATGTATTCAGAAAATATTTGTTGTTCATCGATCAAATATCTTTGAATCAGAATCCTCACAGAATTTGTTGTTGAGCTCACGAAATGATGCTTGAGCTTTTTAACAAATTCTAATAACTGATTTGCTAGAAATAAATGCTTCTGTAGAACTGTCCGCGTCGTCGTTAGATTCCACTCATCAACACGGCAAGGCTTCGCTTGATAGAAATGATTGTCGCCGTCCAGCTGGAAAAGATCTGAGCTAACTCCACGGTGCATGTCCAGAAGATTTTTGAAAAATATGTTGGACTTCAAGTGAAAGAATTCGATTGGCTGCCCTTCTCTTGCACTTAAATTCAACTCTTCACAGCAGAGAATATCTCGTAATTCCCGAGAAATCAAACCCCATTCGTCAACAGGATTGACTTCCCTAGGTTCAGATGCTGAAAAAAACCACAAAATAATAGGTCAAGATGAGCATTCCAACATACGCATAACAGGTTTGTCTATTTCTGCCACTTTCAGCGTTTTCAATACCGGAGAGATATCCCAGGCAAGACGAGGAATGTTATCATGTTCCAAAGGTTCTGAATAAAGTCGGCGTTTGTATTTTCCATCAATCCTCATCA</canonical>
            <polymorphic>TATTTTCTTTATTTTAACTCATTCATCTCACTATCAGTATTTATAAGAGATGCCAGAAAGAAGTGAAGAATTCAATATTGTTTGATATCTCCTAACAAAACGGAGACAATTGAGGTTTTAGAGCAAGTTAAAGGTGGCGTTTTGAAGTTTCAACTTACACTGTAGTCATTCATTCGGCTGACGACGTGGTTCATTTCTCGAATCACATGATAATGAGCGCTGACGGTCTCATAAATATGGTCCAACACTTCGAACCTATTCGAATCAGATGATTGGATATTCAAGCTTGGAAACGAACTGAAAAATCAACAAAATTGCGAACTATTTTCTGATCGAACATACCCAACAATATGTTCGAACTGGACATTCAAACTGTTTCCAAGAGACGAATCAATGTATTCAGAAAATATTTGTTGTTCATCGATCAAATATCTTTGAATCAGAATCCTCACAGAATTTGTTGTTGAGCTCACGAAATGATGCTTGAGCTTTTTAACAAWTTCTAATAACTGATTTGCTAGAAATAAATGCTTCTGTAGAACTGTCCGCGTCGTCGTTAGATTCCACTCATCAACACGGCAAGGCTTCGCTTGATAGAAATGATTGTCGCCGTCCAGCTGGAAAAGATCTGAGCTAACTCCACGGTGCATGTCCAGAAGATTTTTGAAAAATATGTTGGACTTCAAGTGAAAGAATTCGATTGGCTGCCCTTCTCTTGCACTTAAATTCAACTCTTCACAGCAGAGAATATCTCGTAATTCCCGAGAAATCAAACCCCATTCGTCAACAGGATTGACTTCCCTAGGTTCAGATGCTGAAAAAAACCACAAAATAATAGGTCAAGATGAGCATTCCAACATACGCATAACAGGTTTGTCTATTTCTGCCACTTTCAGCGTTTTCAATACCGGAGAGATATCCCAGGCAAGACGAGGAATGTTATCATGTTCCAAAGGTTCTGAATAAAGTCGGCGTTTGTATTTTCCATCAATCCTCATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>386 276 195 68 44 31</canonical_bands>
                <polymorphic_bands>386 276 239 68 31</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>244 205 195 142 68 44 39 32 31</canonical_bands>
                <polymorphic_bands>244 239 205 142 68 39 32 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCCTCACAGAATTTGTTGTT</pcr_primer_p1>
		<pcr_primer_p2>CTTTCACTTGAAGTCCAACATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCCTCACAGAATTTGTTGTTGAGCTCACGAAATGATGCTTGAGCTTTTTAACAAATTCTAATAACTGATTTGCTAGAAATAAATGCTTCTGTAGAACTGTCCGCGTCGTCGTTAGATTCCACTCATCAACACGGCAAGGCTTCGCTTGATAGAAATGATTGTCGCCGTCCAGCTGGAAAAGATCTGAGCTAACTCCACGGTGCATGTCCAGAAGATTTTTGAAAAATATGTTGGACTTCAAGTGAAAG</canonical_amplicon>
		<polymorphic_amplicon>AATCCTCACAGAATTTGTTGTTGAGCTCACGAAATGATGCTTGAGCTTTTTAACAAWTTCTAATAACTGATTTGCTAGAAATAAATGCTTCTGTAGAACTGTCCGCGTCGTCGTTAGATTCCACTCATCAACACGGCAAGGCTTCGCTTGATAGAAATGATTGTCGCCGTCCAGCTGGAAAAGATCTGAGCTAACTCCACGGTGCATGTCCAGAAGATTTTTGAAAAATATGTTGGACTTCAAGTGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21074</snp_id>
        <super_contig>c013000986.Contig1</super_contig>
        <contig_pos>81675</contig_pos>
        <strand>+</strand>
        <context>AATGGAACAA[C/T]TCTGAACAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATCTCATCTTGGTTTATATAAATTTAAAAATTCAGCTCAATGGAACAA</left_flank>
        <right_flank>TCTGAACAACTTTTGTATTCTAAAGTGGTCCTCTTGTTTCAGCTGGTGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGAAACCAGCAGTCGATGCACCAAGTTTGCATGATTACATTGTGAAGGCCAGAAGTCTTTCGAGAGAAGGTAATCTAGAAAATATAGATTTTTAGATGGCATACAATATCGAAGGGAGAAGATTTGACGGAATCCTTAAAAACAGAAATTACCGTATAATAAAGCCCTCTGTTAACTTTGAGTCTATATATCTCGGTTCCCAGGAAAGATGTCAAAAAGTAGTCTACAGAAAAAATATTTTTTTATATTATGATAAGTAATTTATCAGTTTACAAATATTTGATATATTTCACAGAAACAGAGATAAATTGGCTCAAAGTTTAAGGTTAGGGATGGCTTCTAAGTTGAAGAATACCAAACATACTCAAACAGCAATAGTACCAGAAACAATCTTCCGATTTTATTGGAATACTCTTTTACTCAAAAAGGCAACAACTACAAAAATGAAAATCTCATCTTGGTTTATATAAATTTAAAAATTCAGCTCAATGGAACAACTCTGAACAACTTTTGTATTCTAAAGTGGTCCTCTTGTTTCAGCTGGTGATACTCGCAACCAATTTGTCTTTGGTTCATCCACTCCCCGAACCCTTGCTCATCTCGATAAAATCCCTCATAAACAGCGTGTCTATGATGCCAAAATTCCGAAGAAAAGTGCAACACATAGCGATTTCAAAGCGGCTCCAATTAGGTTCACTCCTCGTAGGTTTGACCCATTTCAATCCAAAATTTACTTTCAGTTTTCAGCTACTGTTCCAATTACTAAACCAGTGAAAAAAGAAGAAAACCGTCATGTGATCACTTCGAAGGATGATGATATTGCATCTGAGCCAGATTTCGTTCAGGATAGAGAAGAATTTTTGAATGAAATGAAGAAGCATAAGAAGGAGTTAGAGAAGAAAAAATCTCTCGGAAAGACTGGCGAGTTCTCCTGTCTCACAGTTCTCGCTTAATAGTTTGAGAGCATTTTTCAGATTCCAAGAATCCGATGGAAATTC</canonical>
            <polymorphic>TGAGAAACCAGCAGTCGATGCACCAAGTTTGCATGATTACATTGTGAAGGCCAGAAGTCTTTCGAGAGAAGGTAATCTAGAAAATATAGATTTTTAGATGGCATACAATATCGAAGGGAGAAGATTTGACGGAATCCTTAAAAACAGAAATTACCGTATAATAAAGCCCTCTGTTAACTTTGAGTCTATATATCTCGGTTCCCAGGAAAGATGTCAAAAAGTAGTCTACAGAAAAAATATTTTTTTATATTATGATAAGTAATTTATCAGTTTACAAATATTTGATATATTTCACAGAAACAGAGATAAATTGGCTCAAAGTTTAAGGTTAGGGATGGCTTCTAAGTTGAAGAATACCAAACATACTCAAACAGCAATAGTACCAGAAACAATCTTCCGATTTTATTGGAATACTCTTTTACTCAAAAAGGCAACAACTACAAAAATGAAAATCTCATCTTGGTTTATATAAATTTAAAAATTCAGCTCAATGGAACAAYTCTGAACAACTTTTGTATTCTAAAGTGGTCCTCTTGTTTCAGCTGGTGATACTCGCAACCAATTTGTCTTTGGTTCATCCACTCCCCGAACCCTTGCTCATCTCGATAAAATCCCTCATAAACAGCGTGTCTATGATGCCAAAATTCCGAAGAAAAGTGCAACACATAGCGATTTCAAAGCGGCTCCAATTAGGTTCACTCCTCGTAGGTTTGACCCATTTCAATCCAAAATTTACTTTCAGTTTTCAGCTACTGTTCCAATTACTAAACCAGTGAAAAAAGAAGAAAACCGTCATGTGATCACTTCGAAGGATGATGATATTGCATCTGAGCCAGATTTCGTTCAGGATAGAGAAGAATTTTTGAATGAAATGAAGAAGCATAAGAAGGAGTTAGAGAAGAAAAAATCTCTCGGAAAGACTGGCGAGTTCTCCTGTCTCACAGTTCTCGCTTAATAGTTTGAGAGCATTTTTCAGATTCCAAGAATCCGATGGAAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGCAATAGTACCAGAAACAAT</pcr_primer_p1>
		<pcr_primer_p2>TATGAGGGATTTTATCGAGATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACAGCAATAGTACCAGAAACAATCTTCCGATTTTATTGGAATACTCTTTTACTCAAAAAGGCAACAACTACAAAAATGAAAATCTCATCTTGGTTTATATAAATTTAAAAATTCAGCTCAATGGAACAACTCTGAACAACTTTTGTATTCTAAAGTGGTCCTCTTGTTTCAGCTGGTGATACTCGCAACCAATTTGTCTTTGGTTCATCCACTCCCCGAACCCTTGCTCATCTCGATAAAATCCCTCATA</canonical_amplicon>
		<polymorphic_amplicon>ACAGCAATAGTACCAGAAACAATCTTCCGATTTTATTGGAATACTCTTTTACTCAAAAAGGCAACAACTACAAAAATGAAAATCTCATCTTGGTTTATATAAATTTAAAAATTCAGCTCAATGGAACAAYTCTGAACAACTTTTGTATTCTAAAGTGGTCCTCTTGTTTCAGCTGGTGATACTCGCAACCAATTTGTCTTTGGTTCATCCACTCCCCGAACCCTTGCTCATCTCGATAAAATCCCTCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21075</snp_id>
        <super_contig>c013000986.Contig1</super_contig>
        <contig_pos>83853</contig_pos>
        <strand>+</strand>
        <context>AAATTGATTG[A/T]GCATTCGAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAGTTCCATATCTTATCGTGCAACTTTTATTAAAAACAAAAATTGATTG</left_flank>
        <right_flank>GCATTCGAATTTTGTTTTGTGTATATTATTATGATAGTGGGAAGAAAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGGGAAGTCTTCAGTAGGAGAGATAAAGACAGATGTAGAAAATGTAAGAAATCAAAAATCAAAGAAGTAGTGATTTTTCTGATTCAGAACATTGCTGAGAAGGTTGACGATATCACAAAATCTTTGGAGAAAACTGCGAAAAGTTTGGAGGAAACAAGTGAGAAATTGGGAAGCAAAATCGAAACGGTTCGAATTTTTTGAAAAAAAATTTAAAATTTCGATTTTCTGATTTTCAGACAGCTTCTGAAATCAAACCAAAACTTGAGAATGCCTCAAAGGACGTCATATCGGATGTGATGAAGTCAGGGGAAAAACTTATTGGAGACGTCACATCTGAATTCAAGAAGGCCCTTGAATCCTCTGATCACAAAGTGGATTCAACCAAGATTGGATCTTCCGCTGAGGACGATGTCAAGAACGGATTGAATCTTCGTCACTTTTGAAATTATTAGTTCCATATCTTATCGTGCAACTTTTATTAAAAACAAAAATTGATTGTGCATTCGAATTTTGTTTTGTGTATATTATTATGATAGTGGGAAGAAAATTGATAATAAACAACTGTTAGACCAAATGAACCCTGACTTTGAAATGTACACAACCACAGAGCGAAAAAAAGACTAGTATAAACCAGGAGACAAAAAAATAGGTCACAACCAGGAAGAAATGATACAGGATAATAGAAAATATCTACATGTGTAACTCTAGAAAAAGATTATTTCAAATGAAGACTTGGAAGTGTTGAACTGACTCCGTTCACCCAAAGATTCGCACATGCCACATCAAAACATTGACCACCGTAATCAATTGGATTTTGAACCGGTTGGCAACAGATTACACATTTTCTGCAAACTTTTCTGGTAAGGGAGATGAACTTTAAGATATATTTTATACCTGTCATCGGTGCATTGTTCTACATTCACATCAGCTGATGCTTCTCCAAAAAAGGGTTCCCATTTTCTTTTTAGATTCCGACAGTACTCAGCTTCTTTCGTGGAT</canonical>
            <polymorphic>AGGGGAAGTCTTCAGTAGGAGAGATAAAGACAGATGTAGAAAATGTAAGAAATCAAAAATCAAAGAAGTAGTGATTTTTCTGATTCAGAACATTGCTGAGAAGGTTGACGATATCACAAAATCTTTGGAGAAAACTGCGAAAAGTTTGGAGGAAACAAGTGAGAAATTGGGAAGCAAAATCGAAACGGTTCGAATTTTTTGAAAAAAAATTTAAAATTTCGATTTTCTGATTTTCAGACAGCTTCTGAAATCAAACCAAAACTTGAGAATGCCTCAAAGGACGTCATATCGGATGTGATGAAGTCAGGGGAAAAACTTATTGGAGACGTCACATCTGAATTCAAGAAGGCCCTTGAATCCTCTGATCACAAAGTGGATTCAACCAAGATTGGATCTTCCGCTGAGGACGATGTCAAGAACGGATTGAATCTTCGTCACTTTTGAAATTATTAGTTCCATATCTTATCGTGCAACTTTTATTAAAAACAAAAATTGATTGWGCATTCGAATTTTGTTTTGTGTATATTATTATGATAGTGGGAAGAAAATTGATAATAAACAACTGTTAGACCAAATGAACCCTGACTTTGAAATGTACACAACCACAGAGCGAAAAAAAGACTAGTATAAACCAGGAGACAAAAAAATAGGTCACAACCAGGAAGAAATGATACAGGATAATAGAAAATATCTACATGTGTAACTCTAGAAAAAGATTATTTCAAATGAAGACTTGGAAGTGTTGAACTGACTCCGTTCACCCAAAGATTCGCACATGCCACATCAAAACATTGACCACCGTAATCAATTGGATTTTGAACCGGTTGGCAACAGATTACACATTTTCTGCAAACTTTTCTGGTAAGGGAGATGAACTTTAAGATATATTTTATACCTGTCATCGGTGCATTGTTCTACATTCACATCAGCTGATGCTTCTCCAAAAAAGGGTTCCCATTTTCTTTTTAGATTCCGACAGTACTCAGCTTCTTTCGTGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>470 348 93 58 31</canonical_bands>
                <polymorphic_bands>470 379 93 58</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>136 74 73 67 62 60 49 46 45 43 42 42 37 34 33 31 20 18 18 17 16 14 7 7 6 3</canonical_bands>
                <polymorphic_bands>136 74 73 67 62 60 51 49 46 45 43 42 42 37 34 33 18 18 17 16 14 7 7 6 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCTTCGTCACTTTTGAAATTA</pcr_primer_p1>
		<pcr_primer_p2>TGTATCATTTCTTCCTGGTTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATCTTCGTCACTTTTGAAATTATTAGTTCCATATCTTATCGTGCAACTTTTATTAAAAACAAAAATTGATTGTGCATTCGAATTTTGTTTTGTGTATATTATTATGATAGTGGGAAGAAAATTGATAATAAACAACTGTTAGACCAAATGAACCCTGACTTTGAAATGTACACAACCACAGAGCGAAAAAAAGACTAGTATAAACCAGGAGACAAAAAAATAGGTCACAACCAGGAAGAAATGATACA</canonical_amplicon>
		<polymorphic_amplicon>AATCTTCGTCACTTTTGAAATTATTAGTTCCATATCTTATCGTGCAACTTTTATTAAAAACAAAAATTGATTGWGCATTCGAATTTTGTTTTGTGTATATTATTATGATAGTGGGAAGAAAATTGATAATAAACAACTGTTAGACCAAATGAACCCTGACTTTGAAATGTACACAACCACAGAGCGAAAAAAAGACTAGTATAAACCAGGAGACAAAAAAATAGGTCACAACCAGGAAGAAATGATACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21076</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>39178</contig_pos>
        <strand>+</strand>
        <context>ACCTATCGTC[A/C]GCAGCAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGATGTATAGTAGTGCCTACAGTAATCTCGAATGGTTTGAACCTATCGTC</left_flank>
        <right_flank>GCAGCAAAATTGATATTTGGAAAAGTGACAGGGATAACGAAGTCGGATGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCATAGTCAAAACAATCCCAAACATTGTTATATGTGCGAGTTTTTTGTTTTGGGGTGGTCCATTGACCCTATTCCAAGTTCCATTGAAGGATATACCAAGGAGTGTGAATACATTAATGGGACAGATCGCAGGATCTGGAGCGTATGTCTTAGCACCAATAATTCAATGTTTAATGGCTTCTAACCGATTTTTCCTGTTGTATATACCTTTTTGGAAGTTCAAATTTGAAAAATATCCGATTACTCATTTTGCGATTTTTGTGGGATTTGCAATAGCTGTAACTTGCTCAGTTTTGGGTTATGAACGTAAGAACCTTACCTTACCAACTGAACTTACTGAAACAACTAATTATTTTCAGAATCATGCGGCTACATTTTCGATCCTGAAATGCTTGTATGGCGTTCTGAGTACTTGAACTGTTCTGAAAGTCAATCAGCCATAATTTTTGGATGTATAGTAGTGCCTACAGTAATCTCGAATGGTTTGAACCTATCGTCAGCAGCAAAATTGATATTTGGAAAAGTGACAGGGATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATG</canonical>
            <polymorphic>TGCATAGTCAAAACAATCCCAAACATTGTTATATGTGCGAGTTTTTTGTTTTGGGGTGGTCCATTGACCCTATTCCAAGTTCCATTGAAGGATATACCAAGGAGTGTGAATACATTAATGGGACAGATCGCAGGATCTGGAGCGTATGTCTTAGCACCAATAATTCAATGTTTAATGGCTTCTAACCGATTTTTCCTGTTGTATATACCTTTTTGGAAGTTCAAATTTGAAAAATATCCGATTACTCATTTTGCGATTTTTGTGGGATTTGCAATAGCTGTAACTTGCTCAGTTTTGGGTTATGAACGTAAGAACCTTACCTTACCAACTGAACTTACTGAAACAACTAATTATTTTCAGAATCATGCGGCTACATTTTCGATCCTGAAATGCTTGTATGGCGTTCTGAGTACTTGAACTGTTCTGAAAGTCAATCAGCCATAATTTTTGGATGTATAGTAGTGCCTACAGTAATCTCGAATGGTTTGAACCTATCGTCMGCAGCAAAATTGATATTTGGAAAAGTGACAGGGATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGAACCTTACCTTACCAACTG</pcr_primer_p1>
		<pcr_primer_p2>TTTCATCCGACTTCGTTATC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TAAGAACCTTACCTTACCAACTGAACTTACTGAAACAACTAATTATTTTCAGAATCATGCGGCTACATTTTCGATCCTGAAATGCTTGTATGGCGTTCTGAGTACTTGAACTGTTCTGAAAGTCAATCAGCCATAATTTTTGGATGTATAGTAGTGCCTACAGTAATCTCGAATGGTTTGAACCTATCGTCAGCAGCAAAATTGATATTTGGAAAAGTGACAGGGATAACGAAGTCGGATGAAA</canonical_amplicon>
		<polymorphic_amplicon>TAAGAACCTTACCTTACCAACTGAACTTACTGAAACAACTAATTATTTTCAGAATCATGCGGCTACATTTTCGATCCTGAAATGCTTGTATGGCGTTCTGAGTACTTGAACTGTTCTGAAAGTCAATCAGCCATAATTTTTGGATGTATAGTAGTGCCTACAGTAATCTCGAATGGTTTGAACCTATCGTCMGCAGCAAAATTGATATTTGGAAAAGTGACAGGGATAACGAAGTCGGATGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21077</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>39262</contig_pos>
        <strand>+</strand>
        <context>TTCGTATGTT[C/T]TTGCAGGTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTT</left_flank>
        <right_flank>TTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAGGATATACCAAGGAGTGTGAATACATTAATGGGACAGATCGCAGGATCTGGAGCGTATGTCTTAGCACCAATAATTCAATGTTTAATGGCTTCTAACCGATTTTTCCTGTTGTATATACCTTTTTGGAAGTTCAAATTTGAAAAATATCCGATTACTCATTTTGCGATTTTTGTGGGATTTGCAATAGCTGTAACTTGCTCAGTTTTGGGTTATGAACGTAAGAACCTTACCTTACCAACTGAACTTACTGAAACAACTAATTATTTTCAGAATCATGCGGCTACATTTTCGATCCTGAAATGCTTGTATGGCGTTCTGAGTACTTGAACTGTTCTGAAAGTCAATCAGCCATAATTTTTGGATGTATAGTAGTGCCTACAGTAATCTCGAATGGTTTGAACCTATCGTCAGCAGCAAAATTGATATTTGGAAAAGTGACAGGGATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCT</canonical>
            <polymorphic>TTGAAGGATATACCAAGGAGTGTGAATACATTAATGGGACAGATCGCAGGATCTGGAGCGTATGTCTTAGCACCAATAATTCAATGTTTAATGGCTTCTAACCGATTTTTCCTGTTGTATATACCTTTTTGGAAGTTCAAATTTGAAAAATATCCGATTACTCATTTTGCGATTTTTGTGGGATTTGCAATAGCTGTAACTTGCTCAGTTTTGGGTTATGAACGTAAGAACCTTACCTTACCAACTGAACTTACTGAAACAACTAATTATTTTCAGAATCATGCGGCTACATTTTCGATCCTGAAATGCTTGTATGGCGTTCTGAGTACTTGAACTGTTCTGAAAGTCAATCAGCCATAATTTTTGGATGTATAGTAGTGCCTACAGTAATCTCGAATGGTTTGAACCTATCGTCAGCAGCAAAATTGATATTTGGAAAAGTGACAGGGATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTYTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATAACGAAGTCGGATGAAA</pcr_primer_p1>
		<pcr_primer_p2>AAGCCACAATTTTTGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>GATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTT</canonical_amplicon>
		<polymorphic_amplicon>GATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTYTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21078</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>39515</contig_pos>
        <strand>+</strand>
        <context>ATGGTAAAAG[A/G]AAGGGGAACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAG</left_flank>
        <right_flank>AAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAAACAACTAATTATTTTCAGAATCATGCGGCTACATTTTCGATCCTGAAATGCTTGTATGGCGTTCTGAGTACTTGAACTGTTCTGAAAGTCAATCAGCCATAATTTTTGGATGTATAGTAGTGCCTACAGTAATCTCGAATGGTTTGAACCTATCGTCAGCAGCAAAATTGATATTTGGAAAAGTGACAGGGATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACATCGTATTGACCGGGTACTGTATATTTTCAGAACGTCTTCCAAGACTGCCTCCACGTCATCGATCTTGTCAACTGCCGTTACATCTACGCCCTCCGTGATGAGACCTGGTTCCAATTCATCTT</canonical>
            <polymorphic>CTGAAACAACTAATTATTTTCAGAATCATGCGGCTACATTTTCGATCCTGAAATGCTTGTATGGCGTTCTGAGTACTTGAACTGTTCTGAAAGTCAATCAGCCATAATTTTTGGATGTATAGTAGTGCCTACAGTAATCTCGAATGGTTTGAACCTATCGTCAGCAGCAAAATTGATATTTGGAAAAGTGACAGGGATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGRAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACATCGTATTGACCGGGTACTGTATATTTTCAGAACGTCTTCCAAGACTGCCTCCACGTCATCGATCTTGTCAACTGCCGTTACATCTACGCCCTCCGTGATGAGACCTGGTTCCAATTCATCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGAAAATGGATTCGTATGT</pcr_primer_p1>
		<pcr_primer_p2>TATTTTCCCCCATTGCTATT</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>GGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATA</canonical_amplicon>
		<polymorphic_amplicon>GGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGRAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21079</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>39580</contig_pos>
        <strand>+</strand>
        <context>CGAAAAAGTA[A/C]CCATGGRGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTA</left_flank>
        <right_flank>CCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAA</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCTGAGTACTTGAACTGTTCTGAAAGTCAATCAGCCATAATTTTTGGATGTATAGTAGTGCCTACAGTAATCTCGAATGGTTTGAACCTATCGTCAGCAGCAAAATTGATATTTGGAAAAGTGACAGGGATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACATCGTATTGACCGGGTACTGTATATTTTCAGAACGTCTTCCAAGACTGCCTCCACGTCATCGATCTTGTCAACTGCCGTTACATCTACGCCCTCCGTGATGAGACCTGGTTCCAATTCATCTTCCTCTCCGTCTCATTTGTTTTGATCTACTCTCTAGATGGGTATGTTCCTTTAAAACCGGTTTTAC</canonical>
            <polymorphic>GTTCTGAGTACTTGAACTGTTCTGAAAGTCAATCAGCCATAATTTTTGGATGTATAGTAGTGCCTACAGTAATCTCGAATGGTTTGAACCTATCGTCAGCAGCAAAATTGATATTTGGAAAAGTGACAGGGATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAMCCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACATCGTATTGACCGGGTACTGTATATTTTCAGAACGTCTTCCAAGACTGCCTCCACGTCATCGATCTTGTCAACTGCCGTTACATCTACGCCCTCCGTGATGAGACCTGGTTCCAATTCATCTTCCTCTCCGTCTCATTTGTTTTGATCTACTCTCTAGATGGGTATGTTCCTTTAAAACCGGTTTTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>393 374 122 111</canonical_bands>
                <polymorphic_bands>767 122 111</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAAAAATTGTGGCTTTTTAT</pcr_primer_p1>
		<pcr_primer_p2>GGGAATTTTTAGCCATATTTATC</pcr_primer_p2>
		<pcr_amplicon_size>207</pcr_amplicon_size>
		<canonical_amplicon>TTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCC</canonical_amplicon>
		<polymorphic_amplicon>TTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAMCCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21080</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>39587</contig_pos>
        <strand>+</strand>
        <context>GTAMCCATGG[A/G]GAARAATATG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGG</left_flank>
        <right_flank>GAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCC</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACTTGAACTGTTCTGAAAGTCAATCAGCCATAATTTTTGGATGTATAGTAGTGCCTACAGTAATCTCGAATGGTTTGAACCTATCGTCAGCAGCAAAATTGATATTTGGAAAAGTGACAGGGATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACATCGTATTGACCGGGTACTGTATATTTTCAGAACGTCTTCCAAGACTGCCTCCACGTCATCGATCTTGTCAACTGCCGTTACATCTACGCCCTCCGTGATGAGACCTGGTTCCAATTCATCTTCCTCTCCGTCTCATTTGTTTTGATCTACTCTCTAGATGGGTATGTTCCTTTAAAACCGGTTTTACAATATGC</canonical>
            <polymorphic>GTACTTGAACTGTTCTGAAAGTCAATCAGCCATAATTTTTGGATGTATAGTAGTGCCTACAGTAATCTCGAATGGTTTGAACCTATCGTCAGCAGCAAAATTGATATTTGGAAAAGTGACAGGGATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGRGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACATCGTATTGACCGGGTACTGTATATTTTCAGAACGTCTTCCAAGACTGCCTCCACGTCATCGATCTTGTCAACTGCCGTTACATCTACGCCCTCCGTGATGAGACCTGGTTCCAATTCATCTTCCTCTCCGTCTCATTTGTTTTGATCTACTCTCTAGATGGGTATGTTCCTTTAAAACCGGTTTTACAATATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAAAAATTGTGGCTTTTTAT</pcr_primer_p1>
		<pcr_primer_p2>GGGAATTTTTAGCCATATTTATC</pcr_primer_p2>
		<pcr_amplicon_size>207</pcr_amplicon_size>
		<canonical_amplicon>TTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCC</canonical_amplicon>
		<polymorphic_amplicon>TTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGRGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21081</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>39666</contig_pos>
        <strand></strand>
        <context>AAATACCCAT[A/G]RAGATAAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCAT</left_flank>
        <right_flank>AAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTAC</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCTATCGTCAGCAGCAAAATTGATATTTGGAAAAGTGACAGGGATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACATCGTATTGACCGGGTACTGTATATTTTCAGAACGTCTTCCAAGACTGCCTCCACGTCATCGATCTTGTCAACTGCCGTTACATCTACGCCCTCCGTGATGAGACCTGGTTCCAATTCATCTTCCTCTCCGTCTCATTTGTTTTGATCTACTCTCTAGATGGGTATGTTCCTTTAAAACCGGTTTTACAATATGCAATCTTCTAGATTCGTGATGTTCTATTTCCATCGAGATGTCCAACCTAATTTCATTCAGAGGTTTCTAGCTAACGGCAA</canonical>
            <polymorphic>AACCTATCGTCAGCAGCAAAATTGATATTTGGAAAAGTGACAGGGATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATRAAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACATCGTATTGACCGGGTACTGTATATTTTCAGAACGTCTTCCAAGACTGCCTCCACGTCATCGATCTTGTCAACTGCCGTTACATCTACGCCCTCCGTGATGAGACCTGGTTCCAATTCATCTTCCTCTCCGTCTCATTTGTTTTGATCTACTCTCTAGATGGGTATGTTCCTTTAAAACCGGTTTTACAATATGCAATCTTCTAGATTCGTGATGTTCTATTTCCATCGAGATGTCCAACCTAATTTCATTCAGAGGTTTCTAGCTAACGGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAAAAATATGGCTAAAATACC</pcr_primer_p1>
		<pcr_primer_p2>TTGGAAGACGTTCTGAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>322</pcr_amplicon_size>
		<canonical_amplicon>AGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACATCGTATTGACCGGGTACTGTATATTTTCAGAACGTCTTCCAA</canonical_amplicon>
		<polymorphic_amplicon>AGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATRAAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACATCGTATTGACCGGGTACTGTATATTTTCAGAACGTCTTCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21082</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>41025</contig_pos>
        <strand>+</strand>
        <context>ATAAAACAGT[A/T]ATTGTTATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCCCACTACCTGCATTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGT</left_flank>
        <right_flank>ATTGTTATTTTCCAAAAACGATCATGTCGTTGGCTCGTCAAAACTATCAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATTGATACTGTTTGAATTACTGTATCTTTTCTATGAACAGAGTTACAAGGCCATTAAGCTGGGACCGCGTAGCTCCGACGGTTTTGGGCTTGTAACTTTGCTCATAGACAAGATACAGTAATCAAAATAGTATTTTTTTTGTAGTTCTCGTCAAGTTATATCATGTCTAATGCAGTTTTTCCGAATAGATTGATTCTAAACGGAACTATGACAGGGCCCGCGAAGGTCTGACAAGTACCGCTGAACCACGAAGACACGATGGGCAGGATTTGTCCAAAAACGAGAAACTTCTGAAATTCTTTAAATCTTAAATTTTTCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGCATTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTTATTGTTATTTTCCAAAAACGATCATGTCGTTGGCTCGTCAAAACTATCATGATGAGGTCGAGGCTGCCGTCAATAAACAGGTTAGTTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGATCAATGTTGAGCTATACGCCTCATATGTCTACCTTTCTATGTCGGCTTACTTTGACCGTGATGACGTGGCACTTCCAAAAGTCGCCAAATTCTTCAAAGAGCAATCAGAAGAGGAGCGTGGACACGCCACGGAGCTCATGAGAATCCAGAATGTTCGTGGTGGGCGTGTCGTTTTTAAC</canonical>
            <polymorphic>AGATTGATACTGTTTGAATTACTGTATCTTTTCTATGAACAGAGTTACAAGGCCATTAAGCTGGGACCGCGTAGCTCCGACGGTTTTGGGCTTGTAACTTTGCTCATAGACAAGATACAGTAATCAAAATAGTATTTTTTTTGTAGTTCTCGTCAAGTTATATCATGTCTAATGCAGTTTTTCCGAATAGATTGATTCTAAACGGAACTATGACAGGGCCCGCGAAGGTCTGACAAGTACCGCTGAACCACGAAGACACGATGGGCAGGATTTGTCCAAAAACGAGAAACTTCTGAAATTCTTTAAATCTTAAATTTTTCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGCATTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTWATTGTTATTTTCCAAAAACGATCATGTCGTTGGCTCGTCAAAACTATCATGATGAGGTCGAGGCTGCCGTCAATAAACAGGTTAGTTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGATCAATGTTGAGCTATACGCCTCATATGTCTACCTTTCTATGTCGGCTTACTTTGACCGTGATGACGTGGCACTTCCAAAAGTCGCCAAATTCTTCAAAGAGCAATCAGAAGAGGAGCGTGGACACGCCACGGAGCTCATGAGAATCCAGAATGTTCGTGGTGGGCGTGTCGTTTTTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTTTCTCCTACCCCTCT</pcr_primer_p1>
		<pcr_primer_p2>GACCTCATCATGATAGTTTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGCATTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTTATTGTTATTTTCCAAAAACGATCATGTCGTTGGCTCGTCAAAACTATCATGATGAGGTC</canonical_amplicon>
		<polymorphic_amplicon>TCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGCATTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTWATTGTTATTTTCCAAAAACGATCATGTCGTTGGCTCGTCAAAACTATCATGATGAGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21083</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>40988</contig_pos>
        <strand>+</strand>
        <context>CACTACCTGC[A/G]TTTAAAAGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGC</left_flank>
        <right_flank>TTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTTATTGTTATTTTCC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTAAATTAGATATGATTGAACTTGACAAGTACTACAGATTGATACTGTTTGAATTACTGTATCTTTTCTATGAACAGAGTTACAAGGCCATTAAGCTGGGACCGCGTAGCTCCGACGGTTTTGGGCTTGTAACTTTGCTCATAGACAAGATACAGTAATCAAAATAGTATTTTTTTTGTAGTTCTCGTCAAGTTATATCATGTCTAATGCAGTTTTTCCGAATAGATTGATTCTAAACGGAACTATGACAGGGCCCGCGAAGGTCTGACAAGTACCGCTGAACCACGAAGACACGATGGGCAGGATTTGTCCAAAAACGAGAAACTTCTGAAATTCTTTAAATCTTAAATTTTTCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGCATTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTTATTGTTATTTTCCAAAAACGATCATGTCGTTGGCTCGTCAAAACTATCATGATGAGGTCGAGGCTGCCGTCAATAAACAGGTTAGTTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGATCAATGTTGAGCTATACGCCTCATATGTCTACCTTTCTATGTCGGCTTACTTTGACCGTGATGACGTGGCACTTCCAAAAGTCGCCAAATTCTTCAAAGAGCAATCAGAAGAGGAGCGTGGACACGCCACGGAGCTCATGAG</canonical>
            <polymorphic>AACTAAATTAGATATGATTGAACTTGACAAGTACTACAGATTGATACTGTTTGAATTACTGTATCTTTTCTATGAACAGAGTTACAAGGCCATTAAGCTGGGACCGCGTAGCTCCGACGGTTTTGGGCTTGTAACTTTGCTCATAGACAAGATACAGTAATCAAAATAGTATTTTTTTTGTAGTTCTCGTCAAGTTATATCATGTCTAATGCAGTTTTTCCGAATAGATTGATTCTAAACGGAACTATGACAGGGCCCGCGAAGGTCTGACAAGTACCGCTGAACCACGAAGACACGATGGGCAGGATTTGTCCAAAAACGAGAAACTTCTGAAATTCTTTAAATCTTAAATTTTTCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGCRTTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTTATTGTTATTTTCCAAAAACGATCATGTCGTTGGCTCGTCAAAACTATCATGATGAGGTCGAGGCTGCCGTCAATAAACAGGTTAGTTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGATCAATGTTGAGCTATACGCCTCATATGTCTACCTTTCTATGTCGGCTTACTTTGACCGTGATGACGTGGCACTTCCAAAAGTCGCCAAATTCTTCAAAGAGCAATCAGAAGAGGAGCGTGGACACGCCACGGAGCTCATGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>502 211 210 77</canonical_bands>
                <polymorphic_bands>579 211 210</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATTTTCTCCTACCCCTCT</pcr_primer_p1>
		<pcr_primer_p2>GACCTCATCATGATAGTTTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGCATTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTTATTGTTATTTTCCAAAAACGATCATGTCGTTGGCTCGTCAAAACTATCATGATGAGGTC</canonical_amplicon>
		<polymorphic_amplicon>TCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGCRTTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTTATTGTTATTTTCCAAAAACGATCATGTCGTTGGCTCGTCAAAACTATCATGATGAGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21084</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>40906</contig_pos>
        <strand>+</strand>
        <context>CATGGGTATT[A/T]TTGCACACAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATT</left_flank>
        <right_flank>TTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACCACCATACATCAAAGCCCAAATTTATATGATCTATTACGAAATGAAATAGTTCCTTCTAGAATCAATATTCTTGGATCAACTAAATTAGATATGATTGAACTTGACAAGTACTACAGATTGATACTGTTTGAATTACTGTATCTTTTCTATGAACAGAGTTACAAGGCCATTAAGCTGGGACCGCGTAGCTCCGACGGTTTTGGGCTTGTAACTTTGCTCATAGACAAGATACAGTAATCAAAATAGTATTTTTTTTGTAGTTCTCGTCAAGTTATATCATGTCTAATGCAGTTTTTCCGAATAGATTGATTCTAAACGGAACTATGACAGGGCCCGCGAAGGTCTGACAAGTACCGCTGAACCACGAAGACACGATGGGCAGGATTTGTCCAAAAACGAGAAACTTCTGAAATTCTTTAAATCTTAAATTTTTCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGCATTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTTATTGTTATTTTCCAAAAACGATCATGTCGTTGGCTCGTCAAAACTATCATGATGAGGTCGAGGCTGCCGTCAATAAACAGGTTAGTTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGATCAATGTTGAGCTATACGCCTCATATGTCTACCTTTCTATGTCGGCTTACTTTGACCGTG</canonical>
            <polymorphic>AGACCACCATACATCAAAGCCCAAATTTATATGATCTATTACGAAATGAAATAGTTCCTTCTAGAATCAATATTCTTGGATCAACTAAATTAGATATGATTGAACTTGACAAGTACTACAGATTGATACTGTTTGAATTACTGTATCTTTTCTATGAACAGAGTTACAAGGCCATTAAGCTGGGACCGCGTAGCTCCGACGGTTTTGGGCTTGTAACTTTGCTCATAGACAAGATACAGTAATCAAAATAGTATTTTTTTTGTAGTTCTCGTCAAGTTATATCATGTCTAATGCAGTTTTTCCGAATAGATTGATTCTAAACGGAACTATGACAGGGCCCGCGAAGGTCTGACAAGTACCGCTGAACCACGAAGACACGATGGGCAGGATTTGTCCAAAAACGAGAAACTTCTGAAATTCTTTAAATCTTAAATTTTTCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATTWTTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGCATTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTTATTGTTATTTTCCAAAAACGATCATGTCGTTGGCTCGTCAAAACTATCATGATGAGGTCGAGGCTGCCGTCAATAAACAGGTTAGTTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGATCAATGTTGAGCTATACGCCTCATATGTCTACCTTTCTATGTCGGCTTACTTTGACCGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTTTCTCCTACCCCTCT</pcr_primer_p1>
		<pcr_primer_p2>GACCTCATCATGATAGTTTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGCATTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTTATTGTTATTTTCCAAAAACGATCATGTCGTTGGCTCGTCAAAACTATCATGATGAGGTC</canonical_amplicon>
		<polymorphic_amplicon>TCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATTWTTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGCATTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTTATTGTTATTTTCCAAAAACGATCATGTCGTTGGCTCGTCAAAACTATCATGATGAGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21085</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>40886</contig_pos>
        <strand>+</strand>
        <context>TTTAAGTAAC[A/T]TTTCGCTGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAATTTTTCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAAC</left_flank>
        <right_flank>TTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTATTATCA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGAGCTCATGTGACCAGGAGACCACCATACATCAAAGCCCAAATTTATATGATCTATTACGAAATGAAATAGTTCCTTCTAGAATCAATATTCTTGGATCAACTAAATTAGATATGATTGAACTTGACAAGTACTACAGATTGATACTGTTTGAATTACTGTATCTTTTCTATGAACAGAGTTACAAGGCCATTAAGCTGGGACCGCGTAGCTCCGACGGTTTTGGGCTTGTAACTTTGCTCATAGACAAGATACAGTAATCAAAATAGTATTTTTTTTGTAGTTCTCGTCAAGTTATATCATGTCTAATGCAGTTTTTCCGAATAGATTGATTCTAAACGGAACTATGACAGGGCCCGCGAAGGTCTGACAAGTACCGCTGAACCACGAAGACACGATGGGCAGGATTTGTCCAAAAACGAGAAACTTCTGAAATTCTTTAAATCTTAAATTTTTCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGCATTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTTATTGTTATTTTCCAAAAACGATCATGTCGTTGGCTCGTCAAAACTATCATGATGAGGTCGAGGCTGCCGTCAATAAACAGGTTAGTTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGATCAATGTTGAGCTATACGCCTCATATGTCTACCTTTCTAT</canonical>
            <polymorphic>CTCGAGCTCATGTGACCAGGAGACCACCATACATCAAAGCCCAAATTTATATGATCTATTACGAAATGAAATAGTTCCTTCTAGAATCAATATTCTTGGATCAACTAAATTAGATATGATTGAACTTGACAAGTACTACAGATTGATACTGTTTGAATTACTGTATCTTTTCTATGAACAGAGTTACAAGGCCATTAAGCTGGGACCGCGTAGCTCCGACGGTTTTGGGCTTGTAACTTTGCTCATAGACAAGATACAGTAATCAAAATAGTATTTTTTTTGTAGTTCTCGTCAAGTTATATCATGTCTAATGCAGTTTTTCCGAATAGATTGATTCTAAACGGAACTATGACAGGGCCCGCGAAGGTCTGACAAGTACCGCTGAACCACGAAGACACGATGGGCAGGATTTGTCCAAAAACGAGAAACTTCTGAAATTCTTTAAATCTTAAATTTTTCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACWTTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGCATTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTTATTGTTATTTTCCAAAAACGATCATGTCGTTGGCTCGTCAAAACTATCATGATGAGGTCGAGGCTGCCGTCAATAAACAGGTTAGTTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGATCAATGTTGAGCTATACGCCTCATATGTCTACCTTTCTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGAAACTTCTGAAATTCTTTA</pcr_primer_p1>
		<pcr_primer_p2>GATCGTTTTTGGAAAATAACA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CGAGAAACTTCTGAAATTCTTTAAATCTTAAATTTTTCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGCATTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTTATTGTTATTTTCCAAAAACGATC</canonical_amplicon>
		<polymorphic_amplicon>CGAGAAACTTCTGAAATTCTTTAAATCTTAAATTTTTCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACWTTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGCATTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTTATTGTTATTTTCCAAAAACGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21086</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>40836</contig_pos>
        <strand>+</strand>
        <context>CTTTAAATCT[G/T]AAATTTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGGGCAGGATTTGTCCAAAAACGAGAAACTTCTGAAATTCTTTAAATCT</left_flank>
        <right_flank>AAATTTTTCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGTGATTTGGTATGCACGTACAAAAATAATGTCACTGTTTACTGCTGGCTCGAGCTCATGTGACCAGGAGACCACCATACATCAAAGCCCAAATTTATATGATCTATTACGAAATGAAATAGTTCCTTCTAGAATCAATATTCTTGGATCAACTAAATTAGATATGATTGAACTTGACAAGTACTACAGATTGATACTGTTTGAATTACTGTATCTTTTCTATGAACAGAGTTACAAGGCCATTAAGCTGGGACCGCGTAGCTCCGACGGTTTTGGGCTTGTAACTTTGCTCATAGACAAGATACAGTAATCAAAATAGTATTTTTTTTGTAGTTCTCGTCAAGTTATATCATGTCTAATGCAGTTTTTCCGAATAGATTGATTCTAAACGGAACTATGACAGGGCCCGCGAAGGTCTGACAAGTACCGCTGAACCACGAAGACACGATGGGCAGGATTTGTCCAAAAACGAGAAACTTCTGAAATTCTTTAAATCTTAAATTTTTCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGCATTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTTATTGTTATTTTCCAAAAACGATCATGTCGTTGGCTCGTCAAAACTATCATGATGAGGTCGAGGCTGCCGTCAATAAACAGGTTAGTTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAAT</canonical>
            <polymorphic>TCAGTGATTTGGTATGCACGTACAAAAATAATGTCACTGTTTACTGCTGGCTCGAGCTCATGTGACCAGGAGACCACCATACATCAAAGCCCAAATTTATATGATCTATTACGAAATGAAATAGTTCCTTCTAGAATCAATATTCTTGGATCAACTAAATTAGATATGATTGAACTTGACAAGTACTACAGATTGATACTGTTTGAATTACTGTATCTTTTCTATGAACAGAGTTACAAGGCCATTAAGCTGGGACCGCGTAGCTCCGACGGTTTTGGGCTTGTAACTTTGCTCATAGACAAGATACAGTAATCAAAATAGTATTTTTTTTGTAGTTCTCGTCAAGTTATATCATGTCTAATGCAGTTTTTCCGAATAGATTGATTCTAAACGGAACTATGACAGGGCCCGCGAAGGTCTGACAAGTACCGCTGAACCACGAAGACACGATGGGCAGGATTTGTCCAAAAACGAGAAACTTCTGAAATTCTTTAAATCTKAAATTTTTCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGCATTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTTATTGTTATTTTCCAAAAACGATCATGTCGTTGGCTCGTCAAAACTATCATGATGAGGTCGAGGCTGCCGTCAATAAACAGGTTAGTTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>247 245 234 113 112 42 7</canonical_bands>
                <polymorphic_bands>247 245 234 113 112 49</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCAAATTTATATGATCTATTACGA</pcr_primer_p1>
		<pcr_primer_p2>ATAAGTGATTATGCCATGTGTG</pcr_primer_p2>
		<pcr_amplicon_size>506</pcr_amplicon_size>
		<canonical_amplicon>CCCAAATTTATATGATCTATTACGAAATGAAATAGTTCCTTCTAGAATCAATATTCTTGGATCAACTAAATTAGATATGATTGAACTTGACAAGTACTACAGATTGATACTGTTTGAATTACTGTATCTTTTCTATGAACAGAGTTACAAGGCCATTAAGCTGGGACCGCGTAGCTCCGACGGTTTTGGGCTTGTAACTTTGCTCATAGACAAGATACAGTAATCAAAATAGTATTTTTTTTGTAGTTCTCGTCAAGTTATATCATGTCTAATGCAGTTTTTCCGAATAGATTGATTCTAAACGGAACTATGACAGGGCCCGCGAAGGTCTGACAAGTACCGCTGAACCACGAAGACACGATGGGCAGGATTTGTCCAAAAACGAGAAACTTCTGAAATTCTTTAAATCTTAAATTTTTCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTAT</canonical_amplicon>
		<polymorphic_amplicon>CCCAAATTTATATGATCTATTACGAAATGAAATAGTTCCTTCTAGAATCAATATTCTTGGATCAACTAAATTAGATATGATTGAACTTGACAAGTACTACAGATTGATACTGTTTGAATTACTGTATCTTTTCTATGAACAGAGTTACAAGGCCATTAAGCTGGGACCGCGTAGCTCCGACGGTTTTGGGCTTGTAACTTTGCTCATAGACAAGATACAGTAATCAAAATAGTATTTTTTTTGTAGTTCTCGTCAAGTTATATCATGTCTAATGCAGTTTTTCCGAATAGATTGATTCTAAACGGAACTATGACAGGGCCCGCGAAGGTCTGACAAGTACCGCTGAACCACGAAGACACGATGGGCAGGATTTGTCCAAAAACGAGAAACTTCTGAAATTCTTTAAATCTKAAATTTTTCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21087</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>40807</contig_pos>
        <strand>+</strand>
        <context>TTGTCCAAAA[A/G]CGAGAAACTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACAAGTACCGCTGAACCACGAAGACACGATGGGCAGGATTTGTCCAAAA</left_flank>
        <right_flank>CGAGAAACTTCTGAAATTCTTTAAATCTTAAATTTTTCATTTTCTCCTAC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGATAAGACGAGCACGTAGCATTCGTTATCAGTGATTTGGTATGCACGTACAAAAATAATGTCACTGTTTACTGCTGGCTCGAGCTCATGTGACCAGGAGACCACCATACATCAAAGCCCAAATTTATATGATCTATTACGAAATGAAATAGTTCCTTCTAGAATCAATATTCTTGGATCAACTAAATTAGATATGATTGAACTTGACAAGTACTACAGATTGATACTGTTTGAATTACTGTATCTTTTCTATGAACAGAGTTACAAGGCCATTAAGCTGGGACCGCGTAGCTCCGACGGTTTTGGGCTTGTAACTTTGCTCATAGACAAGATACAGTAATCAAAATAGTATTTTTTTTGTAGTTCTCGTCAAGTTATATCATGTCTAATGCAGTTTTTCCGAATAGATTGATTCTAAACGGAACTATGACAGGGCCCGCGAAGGTCTGACAAGTACCGCTGAACCACGAAGACACGATGGGCAGGATTTGTCCAAAAACGAGAAACTTCTGAAATTCTTTAAATCTTAAATTTTTCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGCATTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTTATTGTTATTTTCCAAAAACGATCATGTCGTTGGCTCGTCAAAACTATCATGATGAGGTCGAGGCTGCCGTCAATAAACAGGTTAGTTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCGGGCTCTTCTATT</canonical>
            <polymorphic>GTGATAAGACGAGCACGTAGCATTCGTTATCAGTGATTTGGTATGCACGTACAAAAATAATGTCACTGTTTACTGCTGGCTCGAGCTCATGTGACCAGGAGACCACCATACATCAAAGCCCAAATTTATATGATCTATTACGAAATGAAATAGTTCCTTCTAGAATCAATATTCTTGGATCAACTAAATTAGATATGATTGAACTTGACAAGTACTACAGATTGATACTGTTTGAATTACTGTATCTTTTCTATGAACAGAGTTACAAGGCCATTAAGCTGGGACCGCGTAGCTCCGACGGTTTTGGGCTTGTAACTTTGCTCATAGACAAGATACAGTAATCAAAATAGTATTTTTTTTGTAGTTCTCGTCAAGTTATATCATGTCTAATGCAGTTTTTCCGAATAGATTGATTCTAAACGGAACTATGACAGGGCCCGCGAAGGTCTGACAAGTACCGCTGAACCACGAAGACACGATGGGCAGGATTTGTCCAAAARCGAGAAACTTCTGAAATTCTTTAAATCTTAAATTTTTCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGCATTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTTATTGTTATTTTCCAAAAACGATCATGTCGTTGGCTCGTCAAAACTATCATGATGAGGTCGAGGCTGCCGTCAATAAACAGGTTAGTTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCGGGCTCTTCTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCAAATTTATATGATCTATTACGA</pcr_primer_p1>
		<pcr_primer_p2>GGGGTAGGAGAAAATGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>435</pcr_amplicon_size>
		<canonical_amplicon>CCCAAATTTATATGATCTATTACGAAATGAAATAGTTCCTTCTAGAATCAATATTCTTGGATCAACTAAATTAGATATGATTGAACTTGACAAGTACTACAGATTGATACTGTTTGAATTACTGTATCTTTTCTATGAACAGAGTTACAAGGCCATTAAGCTGGGACCGCGTAGCTCCGACGGTTTTGGGCTTGTAACTTTGCTCATAGACAAGATACAGTAATCAAAATAGTATTTTTTTTGTAGTTCTCGTCAAGTTATATCATGTCTAATGCAGTTTTTCCGAATAGATTGATTCTAAACGGAACTATGACAGGGCCCGCGAAGGTCTGACAAGTACCGCTGAACCACGAAGACACGATGGGCAGGATTTGTCCAAAAACGAGAAACTTCTGAAATTCTTTAAATCTTAAATTTTTCATTTTCTCCTACCCC</canonical_amplicon>
		<polymorphic_amplicon>CCCAAATTTATATGATCTATTACGAAATGAAATAGTTCCTTCTAGAATCAATATTCTTGGATCAACTAAATTAGATATGATTGAACTTGACAAGTACTACAGATTGATACTGTTTGAATTACTGTATCTTTTCTATGAACAGAGTTACAAGGCCATTAAGCTGGGACCGCGTAGCTCCGACGGTTTTGGGCTTGTAACTTTGCTCATAGACAAGATACAGTAATCAAAATAGTATTTTTTTTGTAGTTCTCGTCAAGTTATATCATGTCTAATGCAGTTTTTCCGAATAGATTGATTCTAAACGGAACTATGACAGGGCCCGCGAAGGTCTGACAAGTACCGCTGAACCACGAAGACACGATGGGCAGGATTTGTCCAAAARCGAGAAACTTCTGAAATTCTTTAAATCTTAAATTTTTCATTTTCTCCTACCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21088</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>109469</contig_pos>
        <strand>+</strand>
        <context>AAGATACGAA[A/C]GCCATTTAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGGTTTTCAAATTTCAGAACTTTTGAAATCGGTCACGAAAAAGATACGAA</left_flank>
        <right_flank>GCCATTTAAAGCACCGAAAAGTGGTCCGAAATCTATTGCAAAACGTCCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATCATGATATCAGTATTATTTTATCATTTGAAACATTTTTGATATCTTGCATAGGAGCCAAGCAAATTTAGTTCAAACTTGGCCGTGTCGATACCAGTTCTATCCCAGGTTTTACGGTATATCTCGTTTTGTATGAAAATATTAAACTTTTGTATGAAAATATTAAAGTTGAACTACAAAAATGTTTATCATAATGTCAGAAATGTTTTAGTGACTTGAAGTGACTCATTTTTCAGATATCCGCCCCCACAATGACCCTTTTCGCACCTTTGGTTTTCATAGTCTGCCTTCCAATGTTCAAAATGGAAATCGACATGTCAGTTGGCGTACTCATTTGCAGTTTTACAATGTATCCAGCTATTGATGCTCTCATTGTGATGTATGTAGTGTCAGATTATCGTAAAATTGCATTGAGTGAGTATTGTATGATTTTGAACTTCAAAAGTTGGTTTTCAAATTTCAGAACTTTTGAAATCGGTCACGAAAAAGATACGAACGCCATTTAAAGCACCGAAAAGTGGTCCGAAATCTATTGCAAAACGTCCAGAACCGATGAGCACATCAACACAAGTTGCCAATGAGTGAATTAAATGTTTTGTATTTTTGCCTCCCTTTTTGAATCAAAGAATAAATCAAAGTATCAAAAAGTGACCGCATTGGAGATCATGTACATTATGTAGACAAAATGTGTTAGGTGGAGACGCAGACAACTGTGCGCATAGTTTGTGACAGACACAACACGGAATCAAAAGAGGTGTTTGTGACGTATCTTGTATAAAAACAGGAGAGGACAAAACCAATAGTACCAATAATGACTCTTTACGAAACTGCTGAAGGTATTCTGGAGACTCATGTGACGTGGGAAGATGTCGAGAAGGAACTTCAGAAGACGTTCAGCACGAAGGCAACGTTTGGAGACAGAAAGACGGCGAGAAATATTAGTGACTTGAAGGTAAGGCACTTTTTAAAATACCTTTTAACCTACAATGGAAAGGCC</canonical>
            <polymorphic>TTTATCATGATATCAGTATTATTTTATCATTTGAAACATTTTTGATATCTTGCATAGGAGCCAAGCAAATTTAGTTCAAACTTGGCCGTGTCGATACCAGTTCTATCCCAGGTTTTACGGTATATCTCGTTTTGTATGAAAATATTAAACTTTTGTATGAAAATATTAAAGTTGAACTACAAAAATGTTTATCATAATGTCAGAAATGTTTTAGTGACTTGAAGTGACTCATTTTTCAGATATCCGCCCCCACAATGACCCTTTTCGCACCTTTGGTTTTCATAGTCTGCCTTCCAATGTTCAAAATGGAAATCGACATGTCAGTTGGCGTACTCATTTGCAGTTTTACAATGTATCCAGCTATTGATGCTCTCATTGTGATGTATGTAGTGTCAGATTATCGTAAAATTGCATTGAGTGAGTATTGTATGATTTTGAACTTCAAAAGTTGGTTTTCAAATTTCAGAACTTTTGAAATCGGTCACGAAAAAGATACGAAMGCCATTTAAAGCACCGAAAAGTGGTCCGAAATCTATTGCAAAACGTCCAGAACCGATGAGCACATCAACACAAGTTGCCAATGAGTGAATTAAATGTTTTGTATTTTTGCCTCCCTTTTTGAATCAAAGAATAAATCAAAGTATCAAAAAGTGACCGCATTGGAGATCATGTACATTATGTAGACAAAATGTGTTAGGTGGAGACGCAGACAACTGTGCGCATAGTTTGTGACAGACACAACACGGAATCAAAAGAGGTGTTTGTGACGTATCTTGTATAAAAACAGGAGAGGACAAAACCAATAGTACCAATAATGACTCTTTACGAAACTGCTGAAGGTATTCTGGAGACTCATGTGACGTGGGAAGATGTCGAGAAGGAACTTCAGAAGACGTTCAGCACGAAGGCAACGTTTGGAGACAGAAAGACGGCGAGAAATATTAGTGACTTGAAGGTAAGGCACTTTTTAAAATACCTTTTAACCTACAATGGAAAGGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGCATTGAGTGAGTATTGTATG</pcr_primer_p1>
		<pcr_primer_p2>GGTCACTTTTTGATACTTTGATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTGCATTGAGTGAGTATTGTATGATTTTGAACTTCAAAAGTTGGTTTTCAAATTTCAGAACTTTTGAAATCGGTCACGAAAAAGATACGAACGCCATTTAAAGCACCGAAAAGTGGTCCGAAATCTATTGCAAAACGTCCAGAACCGATGAGCACATCAACACAAGTTGCCAATGAGTGAATTAAATGTTTTGTATTTTTGCCTCCCTTTTTGAATCAAAGAATAAATCAAAGTATCAAAAAGTGACC</canonical_amplicon>
		<polymorphic_amplicon>TTGCATTGAGTGAGTATTGTATGATTTTGAACTTCAAAAGTTGGTTTTCAAATTTCAGAACTTTTGAAATCGGTCACGAAAAAGATACGAAMGCCATTTAAAGCACCGAAAAGTGGTCCGAAATCTATTGCAAAACGTCCAGAACCGATGAGCACATCAACACAAGTTGCCAATGAGTGAATTAAATGTTTTGTATTTTTGCCTCCCTTTTTGAATCAAAGAATAAATCAAAGTATCAAAAAGTGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21089</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>109636</contig_pos>
        <strand>+</strand>
        <context>GCATTGGAGA[A/T]CATGTACATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTGAATCAAAGAATAAATCAAAGTATCAAAAAGTGACCGCATTGGAGA</left_flank>
        <right_flank>CATGTACATTATGTAGACAAAATGTGTTAGGTGGAGACGCAGACAACTGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGTTGAACTACAAAAATGTTTATCATAATGTCAGAAATGTTTTAGTGACTTGAAGTGACTCATTTTTCAGATATCCGCCCCCACAATGACCCTTTTCGCACCTTTGGTTTTCATAGTCTGCCTTCCAATGTTCAAAATGGAAATCGACATGTCAGTTGGCGTACTCATTTGCAGTTTTACAATGTATCCAGCTATTGATGCTCTCATTGTGATGTATGTAGTGTCAGATTATCGTAAAATTGCATTGAGTGAGTATTGTATGATTTTGAACTTCAAAAGTTGGTTTTCAAATTTCAGAACTTTTGAAATCGGTCACGAAAAAGATACGAACGCCATTTAAAGCACCGAAAAGTGGTCCGAAATCTATTGCAAAACGTCCAGAACCGATGAGCACATCAACACAAGTTGCCAATGAGTGAATTAAATGTTTTGTATTTTTGCCTCCCTTTTTGAATCAAAGAATAAATCAAAGTATCAAAAAGTGACCGCATTGGAGATCATGTACATTATGTAGACAAAATGTGTTAGGTGGAGACGCAGACAACTGTGCGCATAGTTTGTGACAGACACAACACGGAATCAAAAGAGGTGTTTGTGACGTATCTTGTATAAAAACAGGAGAGGACAAAACCAATAGTACCAATAATGACTCTTTACGAAACTGCTGAAGGTATTCTGGAGACTCATGTGACGTGGGAAGATGTCGAGAAGGAACTTCAGAAGACGTTCAGCACGAAGGCAACGTTTGGAGACAGAAAGACGGCGAGAAATATTAGTGACTTGAAGGTAAGGCACTTTTTAAAATACCTTTTAACCTACAATGGAAAGGCCCCTAACCTTGAGTCAATTGTTTATCATAGTGTTAGAAGTGTTTTGCCAATGGACACATTTTTCGTATATTTTACCTGAACCTAGATAAATCGGCTCAAAGTAAAAAAATGCAGAGGCCCTTCTATTACAGACTTTTTGGTAACTTAACATTTGAAGTTTCCAGGGAT</canonical>
            <polymorphic>AAAGTTGAACTACAAAAATGTTTATCATAATGTCAGAAATGTTTTAGTGACTTGAAGTGACTCATTTTTCAGATATCCGCCCCCACAATGACCCTTTTCGCACCTTTGGTTTTCATAGTCTGCCTTCCAATGTTCAAAATGGAAATCGACATGTCAGTTGGCGTACTCATTTGCAGTTTTACAATGTATCCAGCTATTGATGCTCTCATTGTGATGTATGTAGTGTCAGATTATCGTAAAATTGCATTGAGTGAGTATTGTATGATTTTGAACTTCAAAAGTTGGTTTTCAAATTTCAGAACTTTTGAAATCGGTCACGAAAAAGATACGAACGCCATTTAAAGCACCGAAAAGTGGTCCGAAATCTATTGCAAAACGTCCAGAACCGATGAGCACATCAACACAAGTTGCCAATGAGTGAATTAAATGTTTTGTATTTTTGCCTCCCTTTTTGAATCAAAGAATAAATCAAAGTATCAAAAAGTGACCGCATTGGAGAWCATGTACATTATGTAGACAAAATGTGTTAGGTGGAGACGCAGACAACTGTGCGCATAGTTTGTGACAGACACAACACGGAATCAAAAGAGGTGTTTGTGACGTATCTTGTATAAAAACAGGAGAGGACAAAACCAATAGTACCAATAATGACTCTTTACGAAACTGCTGAAGGTATTCTGGAGACTCATGTGACGTGGGAAGATGTCGAGAAGGAACTTCAGAAGACGTTCAGCACGAAGGCAACGTTTGGAGACAGAAAGACGGCGAGAAATATTAGTGACTTGAAGGTAAGGCACTTTTTAAAATACCTTTTAACCTACAATGGAAAGGCCCCTAACCTTGAGTCAATTGTTTATCATAGTGTTAGAAGTGTTTTGCCAATGGACACATTTTTCGTATATTTTACCTGAACCTAGATAAATCGGCTCAAAGTAAAAAAATGCAGAGGCCCTTCTATTACAGACTTTTTGGTAACTTAACATTTGAAGTTTCCAGGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAATGAGTGAATTAAATGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCGTAAAGAGTCATTATTGGTA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CCAATGAGTGAATTAAATGTTTTGTATTTTTGCCTCCCTTTTTGAATCAAAGAATAAATCAAAGTATCAAAAAGTGACCGCATTGGAGATCATGTACATTATGTAGACAAAATGTGTTAGGTGGAGACGCAGACAACTGTGCGCATAGTTTGTGACAGACACAACACGGAATCAAAAGAGGTGTTTGTGACGTATCTTGTATAAAAACAGGAGAGGACAAAACCAATAGTACCAATAATGACTCTTTACGAAA</canonical_amplicon>
		<polymorphic_amplicon>CCAATGAGTGAATTAAATGTTTTGTATTTTTGCCTCCCTTTTTGAATCAAAGAATAAATCAAAGTATCAAAAAGTGACCGCATTGGAGAWCATGTACATTATGTAGACAAAATGTGTTAGGTGGAGACGCAGACAACTGTGCGCATAGTTTGTGACAGACACAACACGGAATCAAAAGAGGTGTTTGTGACGTATCTTGTATAAAAACAGGAGAGGACAAAACCAATAGTACCAATAATGACTCTTTACGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21090</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>113433</contig_pos>
        <strand>+</strand>
        <context>TGCTCACCAG[A/G]GCCAATGAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGCTATCATGGGTCTGAACTCGGTGAAAGTTCAGAACCTGCTCACCAG</left_flank>
        <right_flank>GCCAATGAGGAACAAATACATGTAAGGAATGATATGGATTACCAGAAACA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTATCTGCAGAAAATCGAAAGATTGTTCAGAAGTGGGGTCACACAACTCCCATTTTTTGAGAATTCTCATGGATCCGCAGTGTCCATCAACACCTTTGTTGGAATGAAAACCAAGAACCATATTGGCAGGTTCATGAATGACTTGAACTTTCCAATCGGTAGGATATCCATGCTTACTATAGTTAATTTTCTAGTTTCAGGAGCTTCTACAATTTTGGTGAACGCTGCATATTTCTTGTCGGACTGGAGTACCAAATTCGACGGAGCTCAGACAACGAAGCTTAACTTCCACACAAATCATATGGAGAAACGTCAAATCGATTTCTTATCGAGCTCTCGTCCAGTTCTTTATTCTGAAAACAATGAGTTCCGAGTTCTCACTCTTCGCTATAAAGCGGAATCCTTCGCCATGAGTATTTTCCTTCCCATCAATCGTTTCGGATTGAGAGAAGCTATCATGGGTCTGAACTCGGTGAAAGTTCAGAACCTGCTCACCAGAGCCAATGAGGAACAAATACATGTAAGGAATGATATGGATTACCAGAAACATATTCAGTTCACAAATTTAAGATCCTAATTCCGAAGTGGAAAATTGAGTGCGATTTCCCTCTCACTGATGCTATGCCTCTGCTCGATGTAGCTGAAATGTGCGGACCATTCGCTGAGCTAGATGACATTGCTCCGGGAGCGTCAATCAGTCAGGTTATGCACAAAGTGTTGATTGAGGTTGGGGAGAACGGAACAACTTCGACTACAGATGCTTCCTGTGAATACCGGTGCCCACCAGACAACGTCGACTTTCTGGCTGATCATCCGTTTATGTTCCTGATCACTAAAGACCTTCACCCACTTTTTATCGGAACTCATTATTGATATTTTTCATGACCGTGTATATTCTGTACATTTGAATGTTTTTCTTGTTCGAAAACTTTTGTATATCATCCTTATATGTAACACGCTAGAGGCGTCTGTTGGTTACCCTGTCAGTCTGTGGACTTT</canonical>
            <polymorphic>ACTATCTGCAGAAAATCGAAAGATTGTTCAGAAGTGGGGTCACACAACTCCCATTTTTTGAGAATTCTCATGGATCCGCAGTGTCCATCAACACCTTTGTTGGAATGAAAACCAAGAACCATATTGGCAGGTTCATGAATGACTTGAACTTTCCAATCGGTAGGATATCCATGCTTACTATAGTTAATTTTCTAGTTTCAGGAGCTTCTACAATTTTGGTGAACGCTGCATATTTCTTGTCGGACTGGAGTACCAAATTCGACGGAGCTCAGACAACGAAGCTTAACTTCCACACAAATCATATGGAGAAACGTCAAATCGATTTCTTATCGAGCTCTCGTCCAGTTCTTTATTCTGAAAACAATGAGTTCCGAGTTCTCACTCTTCGCTATAAAGCGGAATCCTTCGCCATGAGTATTTTCCTTCCCATCAATCGTTTCGGATTGAGAGAAGCTATCATGGGTCTGAACTCGGTGAAAGTTCAGAACCTGCTCACCAGRGCCAATGAGGAACAAATACATGTAAGGAATGATATGGATTACCAGAAACATATTCAGTTCACAAATTTAAGATCCTAATTCCGAAGTGGAAAATTGAGTGCGATTTCCCTCTCACTGATGCTATGCCTCTGCTCGATGTAGCTGAAATGTGCGGACCATTCGCTGAGCTAGATGACATTGCTCCGGGAGCGTCAATCAGTCAGGTTATGCACAAAGTGTTGATTGAGGTTGGGGAGAACGGAACAACTTCGACTACAGATGCTTCCTGTGAATACCGGTGCCCACCAGACAACGTCGACTTTCTGGCTGATCATCCGTTTATGTTCCTGATCACTAAAGACCTTCACCCACTTTTTATCGGAACTCATTATTGATATTTTTCATGACCGTGTATATTCTGTACATTTGAATGTTTTTCTTGTTCGAAAACTTTTGTATATCATCCTTATATGTAACACGCTAGAGGCGTCTGTTGGTTACCCTGTCAGTCTGTGGACTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>204 194 140 139 119 63 53 48 26 14</canonical_bands>
                <polymorphic_bands>204 194 188 139 119 63 53 26 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTCGTCCAGTTCTTTATTCT</pcr_primer_p1>
		<pcr_primer_p2>AGGATCTTAAATTTGTGAACTGA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CTCTCGTCCAGTTCTTTATTCTGAAAACAATGAGTTCCGAGTTCTCACTCTTCGCTATAAAGCGGAATCCTTCGCCATGAGTATTTTCCTTCCCATCAATCGTTTCGGATTGAGAGAAGCTATCATGGGTCTGAACTCGGTGAAAGTTCAGAACCTGCTCACCAGAGCCAATGAGGAACAAATACATGTAAGGAATGATATGGATTACCAGAAACATATTCAGTTCACAAATTTAAGATCCT</canonical_amplicon>
		<polymorphic_amplicon>CTCTCGTCCAGTTCTTTATTCTGAAAACAATGAGTTCCGAGTTCTCACTCTTCGCTATAAAGCGGAATCCTTCGCCATGAGTATTTTCCTTCCCATCAATCGTTTCGGATTGAGAGAAGCTATCATGGGTCTGAACTCGGTGAAAGTTCAGAACCTGCTCACCAGRGCCAATGAGGAACAAATACATGTAAGGAATGATATGGATTACCAGAAACATATTCAGTTCACAAATTTAAGATCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21106</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>221387</contig_pos>
        <strand>+</strand>
        <context>CTAGACAAAA[A/G]AAGRTAGCGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGCGGGTCGATGCTTCGTGATGGATAGATGAACCGAAGCTAGACAAAA</left_flank>
        <right_flank>AAGATAGCGTAATCTGACAGTAGTAGTAGTAGGCCCGACTGTTTATGTGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAATTGTTGAATGTCTGTGTTGTAACTGAGAGACACAAAAAAAAGAATGTCGTTGGGGGAAGAGTGTGATGATAAGCGCAATGGGAGGTTCTTTCTGTATTACTTGAGAGGGCGATATGCCACTGTCTTAAGGGGGGTTCTGTGATTAATGACCAAATTTTTTAATACGACTTTCCGACAATGCGAAAGGGAACCCCTCGGGGGTATTTTCAACCTTGACAATTCAGATTATTGGCTTGTGAAAATTACATGAAAAAGTTGAAGAAGAGGGTGATACTAACTGTGAGAAACGAGATGTAGAAGAAGAATGCGTGACCTATATTCAGGGAAAGAGAGAGAATTCCAAATTAGCTCACATTCATAATCTGAAGGCAGTGTTTTTGTGGTGTTCTCGCGCGCAGGCTGGCTGTTCCAAGGCCATTAATTAATTTCGAGAGTGAAAGAATGGAAGCGGGTCGATGCTTCGTGATGGATAGATGAACCGAAGCTAGACAAAAAAAGATAGCGTAATCTGACAGTAGTAGTAGTAGGCCCGACTGTTTATGTGGGCAGTCAGAGCACTTGAAACACCTCTTACCTCCTTCTACCTAACAGAGAGAACCGCCAGCGACAGAAACCACTTATTCACATTTGACCCTGATTAGTTCTTCCATCCAAAATCTTACTTACTTTTTCAACCGCTTTGTCACTTCCTTTATATGGTCCTTGTCCACGGACACCAAGTAAGCATCAGTAACCATCCGATGGTTGGTTTGGGTGCAGTTGAAAACCGACGCCTCGTTTTCGGCTGGAATTTCTAGAGCACGACGGCGAACTTTGAGTTGGATGATTTTTCGGCGGATGCACTGGAAATATACAAGTACAGTACCGGTCAATAACATATGCAAAAAGCCATTTTGACCACTGTTTTCAGGAGTCTGTAGCTGAGCTGACAAGTTTCCGATCACTTTGAAAACTTTGAAGGGCGTGAAACATACTTAGATTGAGAACTTTTGGTT</canonical>
            <polymorphic>ATGAATTGTTGAATGTCTGTGTTGTAACTGAGAGACACAAAAAAAAGAATGTCGTTGGGGGAAGAGTGTGATGATAAGCGCAATGGGAGGTTCTTTCTGTATTACTTGAGAGGGCGATATGCCACTGTCTTAAGGGGGGTTCTGTGATTAATGACCAAATTTTTTAATACGACTTTCCGACAATGCGAAAGGGAACCCCTCGGGGGTATTTTCAACCTTGACAATTCAGATTATTGGCTTGTGAAAATTACATGAAAAAGTTGAAGAAGAGGGTGATACTAACTGTGAGAAACGAGATGTAGAAGAAGAATGCGTGACCTATATTCAGGGAAAGAGAGAGAATTCCAAATTAGCTCACATTCATAATCTGAAGGCAGTGTTTTTGTGGTGTTCTCGCGCGCAGGCTGGCTGTTCCAAGGCCATTAATTAATTTCGAGAGTGAAAGAATGGAAGCGGGTCGATGCTTCGTGATGGATAGATGAACCGAAGCTAGACAAAARAAGATAGCGTAATCTGACAGTAGTAGTAGTAGGCCCGACTGTTTATGTGGGCAGTCAGAGCACTTGAAACACCTCTTACCTCCTTCTACCTAACAGAGAGAACCGCCAGCGACAGAAACCACTTATTCACATTTGACCCTGATTAGTTCTTCCATCCAAAATCTTACTTACTTTTTCAACCGCTTTGTCACTTCCTTTATATGGTCCTTGTCCACGGACACCAAGTAAGCATCAGTAACCATCCGATGGTTGGTTTGGGTGCAGTTGAAAACCGACGCCTCGTTTTCGGCTGGAATTTCTAGAGCACGACGGCGAACTTTGAGTTGGATGATTTTTCGGCGGATGCACTGGAAATATACAAGTACAGTACCGGTCAATAACATATGCAAAAAGCCATTTTGACCACTGTTTTCAGGAGTCTGTAGCTGAGCTGACAAGTTTCCGATCACTTTGAAAACTTTGAAGGGCGTGAAACATACTTAGATTGAGAACTTTTGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCCAAATTAGCTCACATTC</pcr_primer_p1>
		<pcr_primer_p2>GTAGAAGGAGGTAAGAGGTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTCCAAATTAGCTCACATTCATAATCTGAAGGCAGTGTTTTTGTGGTGTTCTCGCGCGCAGGCTGGCTGTTCCAAGGCCATTAATTAATTTCGAGAGTGAAAGAATGGAAGCGGGTCGATGCTTCGTGATGGATAGATGAACCGAAGCTAGACAAAAAAAGATAGCGTAATCTGACAGTAGTAGTAGTAGGCCCGACTGTTTATGTGGGCAGTCAGAGCACTTGAAACACCTCTTACCTCCTTCTAC</canonical_amplicon>
		<polymorphic_amplicon>AATTCCAAATTAGCTCACATTCATAATCTGAAGGCAGTGTTTTTGTGGTGTTCTCGCGCGCAGGCTGGCTGTTCCAAGGCCATTAATTAATTTCGAGAGTGAAAGAATGGAAGCGGGTCGATGCTTCGTGATGGATAGATGAACCGAAGCTAGACAAAARAAGATAGCGTAATCTGACAGTAGTAGTAGTAGGCCCGACTGTTTATGTGGGCAGTCAGAGCACTTGAAACACCTCTTACCTCCTTCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21107</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>221391</contig_pos>
        <strand>+</strand>
        <context>ACAAAARAAG[A/G]TAGCGTAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGGTCGATGCTTCGTGATGGATAGATGAACCGAAGCTAGACAAAAAAAG</left_flank>
        <right_flank>TAGCGTAATCTGACAGTAGTAGTAGTAGGCCCGACTGTTTATGTGGGCAG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGTTGAATGTCTGTGTTGTAACTGAGAGACACAAAAAAAAGAATGTCGTTGGGGGAAGAGTGTGATGATAAGCGCAATGGGAGGTTCTTTCTGTATTACTTGAGAGGGCGATATGCCACTGTCTTAAGGGGGGTTCTGTGATTAATGACCAAATTTTTTAATACGACTTTCCGACAATGCGAAAGGGAACCCCTCGGGGGTATTTTCAACCTTGACAATTCAGATTATTGGCTTGTGAAAATTACATGAAAAAGTTGAAGAAGAGGGTGATACTAACTGTGAGAAACGAGATGTAGAAGAAGAATGCGTGACCTATATTCAGGGAAAGAGAGAGAATTCCAAATTAGCTCACATTCATAATCTGAAGGCAGTGTTTTTGTGGTGTTCTCGCGCGCAGGCTGGCTGTTCCAAGGCCATTAATTAATTTCGAGAGTGAAAGAATGGAAGCGGGTCGATGCTTCGTGATGGATAGATGAACCGAAGCTAGACAAAAAAAGATAGCGTAATCTGACAGTAGTAGTAGTAGGCCCGACTGTTTATGTGGGCAGTCAGAGCACTTGAAACACCTCTTACCTCCTTCTACCTAACAGAGAGAACCGCCAGCGACAGAAACCACTTATTCACATTTGACCCTGATTAGTTCTTCCATCCAAAATCTTACTTACTTTTTCAACCGCTTTGTCACTTCCTTTATATGGTCCTTGTCCACGGACACCAAGTAAGCATCAGTAACCATCCGATGGTTGGTTTGGGTGCAGTTGAAAACCGACGCCTCGTTTTCGGCTGGAATTTCTAGAGCACGACGGCGAACTTTGAGTTGGATGATTTTTCGGCGGATGCACTGGAAATATACAAGTACAGTACCGGTCAATAACATATGCAAAAAGCCATTTTGACCACTGTTTTCAGGAGTCTGTAGCTGAGCTGACAAGTTTCCGATCACTTTGAAAACTTTGAAGGGCGTGAAACATACTTAGATTGAGAACTTTTGGTTTCAC</canonical>
            <polymorphic>ATTGTTGAATGTCTGTGTTGTAACTGAGAGACACAAAAAAAAGAATGTCGTTGGGGGAAGAGTGTGATGATAAGCGCAATGGGAGGTTCTTTCTGTATTACTTGAGAGGGCGATATGCCACTGTCTTAAGGGGGGTTCTGTGATTAATGACCAAATTTTTTAATACGACTTTCCGACAATGCGAAAGGGAACCCCTCGGGGGTATTTTCAACCTTGACAATTCAGATTATTGGCTTGTGAAAATTACATGAAAAAGTTGAAGAAGAGGGTGATACTAACTGTGAGAAACGAGATGTAGAAGAAGAATGCGTGACCTATATTCAGGGAAAGAGAGAGAATTCCAAATTAGCTCACATTCATAATCTGAAGGCAGTGTTTTTGTGGTGTTCTCGCGCGCAGGCTGGCTGTTCCAAGGCCATTAATTAATTTCGAGAGTGAAAGAATGGAAGCGGGTCGATGCTTCGTGATGGATAGATGAACCGAAGCTAGACAAAAAAAGRTAGCGTAATCTGACAGTAGTAGTAGTAGGCCCGACTGTTTATGTGGGCAGTCAGAGCACTTGAAACACCTCTTACCTCCTTCTACCTAACAGAGAGAACCGCCAGCGACAGAAACCACTTATTCACATTTGACCCTGATTAGTTCTTCCATCCAAAATCTTACTTACTTTTTCAACCGCTTTGTCACTTCCTTTATATGGTCCTTGTCCACGGACACCAAGTAAGCATCAGTAACCATCCGATGGTTGGTTTGGGTGCAGTTGAAAACCGACGCCTCGTTTTCGGCTGGAATTTCTAGAGCACGACGGCGAACTTTGAGTTGGATGATTTTTCGGCGGATGCACTGGAAATATACAAGTACAGTACCGGTCAATAACATATGCAAAAAGCCATTTTGACCACTGTTTTCAGGAGTCTGTAGCTGAGCTGACAAGTTTCCGATCACTTTGAAAACTTTGAAGGGCGTGAAACATACTTAGATTGAGAACTTTTGGTTTCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCCAAATTAGCTCACATTC</pcr_primer_p1>
		<pcr_primer_p2>GTAGAAGGAGGTAAGAGGTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTCCAAATTAGCTCACATTCATAATCTGAAGGCAGTGTTTTTGTGGTGTTCTCGCGCGCAGGCTGGCTGTTCCAAGGCCATTAATTAATTTCGAGAGTGAAAGAATGGAAGCGGGTCGATGCTTCGTGATGGATAGATGAACCGAAGCTAGACAAAAAAAGATAGCGTAATCTGACAGTAGTAGTAGTAGGCCCGACTGTTTATGTGGGCAGTCAGAGCACTTGAAACACCTCTTACCTCCTTCTAC</canonical_amplicon>
		<polymorphic_amplicon>AATTCCAAATTAGCTCACATTCATAATCTGAAGGCAGTGTTTTTGTGGTGTTCTCGCGCGCAGGCTGGCTGTTCCAAGGCCATTAATTAATTTCGAGAGTGAAAGAATGGAAGCGGGTCGATGCTTCGTGATGGATAGATGAACCGAAGCTAGACAAAAAAAGRTAGCGTAATCTGACAGTAGTAGTAGTAGGCCCGACTGTTTATGTGGGCAGTCAGAGCACTTGAAACACCTCTTACCTCCTTCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21108</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>223299</contig_pos>
        <strand>+</strand>
        <context>GAACGGTTTG[A/T]AATTTGCTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAGAGTACGGTAGTTGGGAGGTGAGATTGCTCATTAGAGAACGGTTTG</left_flank>
        <right_flank>AATTTGCTCTGATAGAAACCAACCGTCAACATTGAGCTCAATCATCTCGA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGGTGGGCTATATATGACCGAAATGAGAAAAAACGGAGGAAAAGGAGATGGGGATTTTAAATGAAAAATTTGTTTCCTTCCCAAAAGAAGCATCTCGTGGTTCAGAATGTGCCAACACAAAACGAAGACCGGAAATCGTTTATGAAACAAATGAATGAATGAAAAAAGTGTCAGAAGCACTCGACGAACTGCTACTTCATGTAAGCGTTGTTGCGTGAATAATTTAGTGGAAAAGATACAAAAAATGATGAAGAAGTGTGTGCACTTTTCTTAGTTAATTGCTTTTTTCTTTTCTTCTAGAGACCTTTTTTGTGTTTCAAGAGCTTAGGGAAGGAGCACTTGGAGCTTCCTCTCAATACATTGAATGAAGTTCGTGGCATGGAAATGAATGTTTCTAAAGTTTATAAATAGAAAAAACTACTCTTTTCAAAGGAGGAAGCGGAAATTGAAAGAGTACGGTAGTTGGGAGGTGAGATTGCTCATTAGAGAACGGTTTGTAATTTGCTCTGATAGAAACCAACCGTCAACATTGAGCTCAATCATCTCGATTCCTGTGAAAGATATCAAAACGTAGTCAACTGATAAATTATTTATCATAATATAACCAATATTTTATCAGTTGACAGATTTTTGATATCTTTCACATGAATCAAGATAAAAAACTTGTGTGTGAAGAATCTTCTTGGTGGGGTCTTCTTGGTGGTGTGTGAAGAATCTTCTTGGGGTCACCAAGTGGGCTTTAGAAGAAATTCTAAATGCCAGGACAAAAGGGACCAAAAATGTTTGGAACATTCACCATACAGACAGAAAAACATATTAAAATAATACTACGGTACTTTCGAAGATAAATAACAGTTAAAGGATGAAAGTTCAAGGCTTCTAGAAAATCGTAGAACCTGTAATAGAAGGGCTCCTATCTTTTAACTTTGAGCCAATTCATCTCACATCAGTTCCTGTGAAAAATTTAAAAATGCTGTCAGCTGATAAAGTGTTTATCA</canonical>
            <polymorphic>TCTGGTGGGCTATATATGACCGAAATGAGAAAAAACGGAGGAAAAGGAGATGGGGATTTTAAATGAAAAATTTGTTTCCTTCCCAAAAGAAGCATCTCGTGGTTCAGAATGTGCCAACACAAAACGAAGACCGGAAATCGTTTATGAAACAAATGAATGAATGAAAAAAGTGTCAGAAGCACTCGACGAACTGCTACTTCATGTAAGCGTTGTTGCGTGAATAATTTAGTGGAAAAGATACAAAAAATGATGAAGAAGTGTGTGCACTTTTCTTAGTTAATTGCTTTTTTCTTTTCTTCTAGAGACCTTTTTTGTGTTTCAAGAGCTTAGGGAAGGAGCACTTGGAGCTTCCTCTCAATACATTGAATGAAGTTCGTGGCATGGAAATGAATGTTTCTAAAGTTTATAAATAGAAAAAACTACTCTTTTCAAAGGAGGAAGCGGAAATTGAAAGAGTACGGTAGTTGGGAGGTGAGATTGCTCATTAGAGAACGGTTTGWAATTTGCTCTGATAGAAACCAACCGTCAACATTGAGCTCAATCATCTCGATTCCTGTGAAAGATATCAAAACGTAGTCAACTGATAAATTATTTATCATAATATAACCAATATTTTATCAGTTGACAGATTTTTGATATCTTTCACATGAATCAAGATAAAAAACTTGTGTGTGAAGAATCTTCTTGGTGGGGTCTTCTTGGTGGTGTGTGAAGAATCTTCTTGGGGTCACCAAGTGGGCTTTAGAAGAAATTCTAAATGCCAGGACAAAAGGGACCAAAAATGTTTGGAACATTCACCATACAGACAGAAAAACATATTAAAATAATACTACGGTACTTTCGAAGATAAATAACAGTTAAAGGATGAAAGTTCAAGGCTTCTAGAAAATCGTAGAACCTGTAATAGAAGGGCTCCTATCTTTTAACTTTGAGCCAATTCATCTCACATCAGTTCCTGTGAAAAATTTAAAAATGCTGTCAGCTGATAAAGTGTTTATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTGAAAGAGTACGGTAGTTG</pcr_primer_p1>
		<pcr_primer_p2>ATTTCTTCTAAAGCCCACTTG</pcr_primer_p2>
		<pcr_amplicon_size>308</pcr_amplicon_size>
		<canonical_amplicon>AAATTGAAAGAGTACGGTAGTTGGGAGGTGAGATTGCTCATTAGAGAACGGTTTGTAATTTGCTCTGATAGAAACCAACCGTCAACATTGAGCTCAATCATCTCGATTCCTGTGAAAGATATCAAAACGTAGTCAACTGATAAATTATTTATCATAATATAACCAATATTTTATCAGTTGACAGATTTTTGATATCTTTCACATGAATCAAGATAAAAAACTTGTGTGTGAAGAATCTTCTTGGTGGGGTCTTCTTGGTGGTGTGTGAAGAATCTTCTTGGGGTCACCAAGTGGGCTTTAGAAGAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAATTGAAAGAGTACGGTAGTTGGGAGGTGAGATTGCTCATTAGAGAACGGTTTGWAATTTGCTCTGATAGAAACCAACCGTCAACATTGAGCTCAATCATCTCGATTCCTGTGAAAGATATCAAAACGTAGTCAACTGATAAATTATTTATCATAATATAACCAATATTTTATCAGTTGACAGATTTTTGATATCTTTCACATGAATCAAGATAAAAAACTTGTGTGTGAAGAATCTTCTTGGTGGGGTCTTCTTGGTGGTGTGTGAAGAATCTTCTTGGGGTCACCAAGTGGGCTTTAGAAGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21109</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>223110</contig_pos>
        <strand>+</strand>
        <context>AGAGACCTTT[G/T]TTGTGTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTGCACTTTTCTTAGTTAATTGCTTTTTTCTTTTCTTCTAGAGACCTTT</left_flank>
        <right_flank>TTGTGTTTCAAGAGCTTAGGGAAGGAGCACTTGGAGCTTCCTCTCAATAC</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCTCCCTCTCCACCAATATCACAAATCCACTCAAAGGTGTTGAAGTCGTCACAGTCTTCTCTTTCTTGTTTCCACCATTCCTTGCACTACTCAACCGTCGGAGTGACGTCCGTTTCAGGTCGGACAGTGCTTGTGGTATAGACACCGATTTGGACATCGGCCCACACTAAAAAAAAAATGACAACTTTCTGGTGGGCTATATATGACCGAAATGAGAAAAAACGGAGGAAAAGGAGATGGGGATTTTAAATGAAAAATTTGTTTCCTTCCCAAAAGAAGCATCTCGTGGTTCAGAATGTGCCAACACAAAACGAAGACCGGAAATCGTTTATGAAACAAATGAATGAATGAAAAAAGTGTCAGAAGCACTCGACGAACTGCTACTTCATGTAAGCGTTGTTGCGTGAATAATTTAGTGGAAAAGATACAAAAAATGATGAAGAAGTGTGTGCACTTTTCTTAGTTAATTGCTTTTTTCTTTTCTTCTAGAGACCTTTTTTGTGTTTCAAGAGCTTAGGGAAGGAGCACTTGGAGCTTCCTCTCAATACATTGAATGAAGTTCGTGGCATGGAAATGAATGTTTCTAAAGTTTATAAATAGAAAAAACTACTCTTTTCAAAGGAGGAAGCGGAAATTGAAAGAGTACGGTAGTTGGGAGGTGAGATTGCTCATTAGAGAACGGTTTGTAATTTGCTCTGATAGAAACCAACCGTCAACATTGAGCTCAATCATCTCGATTCCTGTGAAAGATATCAAAACGTAGTCAACTGATAAATTATTTATCATAATATAACCAATATTTTATCAGTTGACAGATTTTTGATATCTTTCACATGAATCAAGATAAAAAACTTGTGTGTGAAGAATCTTCTTGGTGGGGTCTTCTTGGTGGTGTGTGAAGAATCTTCTTGGGGTCACCAAGTGGGCTTTAGAAGAAATTCTAAATGCCAGGACAAAAGGGACCAAAAATGTTTGGAACATTCACCATACAGACAGAA</canonical>
            <polymorphic>GTCCTCCCTCTCCACCAATATCACAAATCCACTCAAAGGTGTTGAAGTCGTCACAGTCTTCTCTTTCTTGTTTCCACCATTCCTTGCACTACTCAACCGTCGGAGTGACGTCCGTTTCAGGTCGGACAGTGCTTGTGGTATAGACACCGATTTGGACATCGGCCCACACTAAAAAAAAAATGACAACTTTCTGGTGGGCTATATATGACCGAAATGAGAAAAAACGGAGGAAAAGGAGATGGGGATTTTAAATGAAAAATTTGTTTCCTTCCCAAAAGAAGCATCTCGTGGTTCAGAATGTGCCAACACAAAACGAAGACCGGAAATCGTTTATGAAACAAATGAATGAATGAAAAAAGTGTCAGAAGCACTCGACGAACTGCTACTTCATGTAAGCGTTGTTGCGTGAATAATTTAGTGGAAAAGATACAAAAAATGATGAAGAAGTGTGTGCACTTTTCTTAGTTAATTGCTTTTTTCTTTTCTTCTAGAGACCTTTKTTGTGTTTCAAGAGCTTAGGGAAGGAGCACTTGGAGCTTCCTCTCAATACATTGAATGAAGTTCGTGGCATGGAAATGAATGTTTCTAAAGTTTATAAATAGAAAAAACTACTCTTTTCAAAGGAGGAAGCGGAAATTGAAAGAGTACGGTAGTTGGGAGGTGAGATTGCTCATTAGAGAACGGTTTGTAATTTGCTCTGATAGAAACCAACCGTCAACATTGAGCTCAATCATCTCGATTCCTGTGAAAGATATCAAAACGTAGTCAACTGATAAATTATTTATCATAATATAACCAATATTTTATCAGTTGACAGATTTTTGATATCTTTCACATGAATCAAGATAAAAAACTTGTGTGTGAAGAATCTTCTTGGTGGGGTCTTCTTGGTGGTGTGTGAAGAATCTTCTTGGGGTCACCAAGTGGGCTTTAGAAGAAATTCTAAATGCCAGGACAAAAGGGACCAAAAATGTTTGGAACATTCACCATACAGACAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTGAATAATTTAGTGGAAAAGA</pcr_primer_p1>
		<pcr_primer_p2>CAACTACCGTACTCTTTCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGTGAATAATTTAGTGGAAAAGATACAAAAAATGATGAAGAAGTGTGTGCACTTTTCTTAGTTAATTGCTTTTTTCTTTTCTTCTAGAGACCTTTTTTGTGTTTCAAGAGCTTAGGGAAGGAGCACTTGGAGCTTCCTCTCAATACATTGAATGAAGTTCGTGGCATGGAAATGAATGTTTCTAAAGTTTATAAATAGAAAAAACTACTCTTTTCAAAGGAGGAAGCGGAAATTGAAAGAGTACGGTAGTTG</canonical_amplicon>
		<polymorphic_amplicon>CGTGAATAATTTAGTGGAAAAGATACAAAAAATGATGAAGAAGTGTGTGCACTTTTCTTAGTTAATTGCTTTTTTCTTTTCTTCTAGAGACCTTTKTTGTGTTTCAAGAGCTTAGGGAAGGAGCACTTGGAGCTTCCTCTCAATACATTGAATGAAGTTCGTGGCATGGAAATGAATGTTTCTAAAGTTTATAAATAGAAAAAACTACTCTTTTCAAAGGAGGAAGCGGAAATTGAAAGAGTACGGTAGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21110</snp_id>
        <super_contig>c013101329.Contig1</super_contig>
        <contig_pos>77516</contig_pos>
        <strand>+</strand>
        <context>AAGAATAAAA[A/C]ATTTCTTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTCTGATTGTTTTCCCTTTTTCATATTCTTATAGATTTAAGAATAAAA</left_flank>
        <right_flank>ATTTCTTTTCTGTTCTCTATATGTTTATACAAAATGTGCTCCGGATGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAAAATATCCTGTTTATTTTCCAAAAATCATATTTCTTTCCAGATTTTCTCCGACTACCCACCATTTCAAGGTGGCCAAGGATTCACACTGAACACCACCGACGAAATCGACCTTCATTTGTTCAAAAGTGTCGCCAAATATCATTCCAAACTGATTGTAATGATAAACGCACCCACTAAAAACGCCCGCCACCGTCTATTTTTCCGTGCCAAGCGCGGTCATGTTGTCGGTATTTCGATCAGAGAGACATCAATGCAAATCAGTGTCGTCTGGCCAAAAAATTACAATACTATTGATTTCCCGACTCTTCCACCAGAGGTTACTGGATTGTCTTTGAATGAACCGGGTCCGTCGACTGCTGGACAAATTAGTCCGTAATTGTTTTTTTCTGAATCTTATTTTTTGCTTTATTTGAATTATCTGGCTTGTAGCTGACTATTTTATTGTTTTCTGATTGTTTTCCCTTTTTCATATTCTTATAGATTTAAGAATAAAACATTTCTTTTCTGTTCTCTATATGTTTATACAAAATGTGCTCCGGATGAATATAAGTTTTTCAAAATCGATTTAAAGAATAGAGCTGAATATTTGATTTTCAAATAGAAATCTGTTCATTGTGAAAGGAAATATGTGCATACATATAAAAATTTGGAAAGCATTACATATTTCAAATACCTCGTAACAAACAGTAACCTGGATGAGAAATGAAAGATCAACAATAATAACATTTAGGTAAAAAAGAAAACTAATCGACCAGAGAATTCCACCATTTTTCTATATCTTTTGTAGTTTCACTCGGCATCAGTGGTCTCGGGCTTCCCTGTGTCGATGGTACCGGTAAAGAGGGAGTTATCACCTGGAATAATGTACTTCAGAAGTCATTAGACAAGAAAAACAAACCAGTGGCGAATGATCTCCCATAAATTCGTCAGATAAGTTTTTGGGTGAGAATGGAGAATCTTCTCCACGTTCTTCCACATCCGGAAGATCATAAACG</canonical>
            <polymorphic>ATCAAAATATCCTGTTTATTTTCCAAAAATCATATTTCTTTCCAGATTTTCTCCGACTACCCACCATTTCAAGGTGGCCAAGGATTCACACTGAACACCACCGACGAAATCGACCTTCATTTGTTCAAAAGTGTCGCCAAATATCATTCCAAACTGATTGTAATGATAAACGCACCCACTAAAAACGCCCGCCACCGTCTATTTTTCCGTGCCAAGCGCGGTCATGTTGTCGGTATTTCGATCAGAGAGACATCAATGCAAATCAGTGTCGTCTGGCCAAAAAATTACAATACTATTGATTTCCCGACTCTTCCACCAGAGGTTACTGGATTGTCTTTGAATGAACCGGGTCCGTCGACTGCTGGACAAATTAGTCCGTAATTGTTTTTTTCTGAATCTTATTTTTTGCTTTATTTGAATTATCTGGCTTGTAGCTGACTATTTTATTGTTTTCTGATTGTTTTCCCTTTTTCATATTCTTATAGATTTAAGAATAAAAMATTTCTTTTCTGTTCTCTATATGTTTATACAAAATGTGCTCCGGATGAATATAAGTTTTTCAAAATCGATTTAAAGAATAGAGCTGAATATTTGATTTTCAAATAGAAATCTGTTCATTGTGAAAGGAAATATGTGCATACATATAAAAATTTGGAAAGCATTACATATTTCAAATACCTCGTAACAAACAGTAACCTGGATGAGAAATGAAAGATCAACAATAATAACATTTAGGTAAAAAAGAAAACTAATCGACCAGAGAATTCCACCATTTTTCTATATCTTTTGTAGTTTCACTCGGCATCAGTGGTCTCGGGCTTCCCTGTGTCGATGGTACCGGTAAAGAGGGAGTTATCACCTGGAATAATGTACTTCAGAAGTCATTAGACAAGAAAAACAAACCAGTGGCGAATGATCTCCCATAAATTCGTCAGATAAGTTTTTGGGTGAGAATGGAGAATCTTCTCCACGTTCTTCCACATCCGGAAGATCATAAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATCTGGCTTGTAGCTGACTAT</pcr_primer_p1>
		<pcr_primer_p2>TGTAATGCTTTCCAAATTTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTATCTGGCTTGTAGCTGACTATTTTATTGTTTTCTGATTGTTTTCCCTTTTTCATATTCTTATAGATTTAAGAATAAAACATTTCTTTTCTGTTCTCTATATGTTTATACAAAATGTGCTCCGGATGAATATAAGTTTTTCAAAATCGATTTAAAGAATAGAGCTGAATATTTGATTTTCAAATAGAAATCTGTTCATTGTGAAAGGAAATATGTGCATACATATAAAAATTTGGAAAGCATTACA</canonical_amplicon>
		<polymorphic_amplicon>TTATCTGGCTTGTAGCTGACTATTTTATTGTTTTCTGATTGTTTTCCCTTTTTCATATTCTTATAGATTTAAGAATAAAAMATTTCTTTTCTGTTCTCTATATGTTTATACAAAATGTGCTCCGGATGAATATAAGTTTTTCAAAATCGATTTAAAGAATAGAGCTGAATATTTGATTTTCAAATAGAAATCTGTTCATTGTGAAAGGAAATATGTGCATACATATAAAAATTTGGAAAGCATTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21111</snp_id>
        <super_contig>c013101329.Contig1</super_contig>
        <contig_pos>77545</contig_pos>
        <strand>+</strand>
        <context>ATATGTTTAT[A/T]CAAAATGTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTATAGATTTAAGAATAAAACATTTCTTTTCTGTTCTCTATATGTTTAT</left_flank>
        <right_flank>CAAAATGTGCTCCGGATGAATATAAGTTTTTCAAAATCGATTTAAAGAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATATTTCTTTCCAGATTTTCTCCGACTACCCACCATTTCAAGGTGGCCAAGGATTCACACTGAACACCACCGACGAAATCGACCTTCATTTGTTCAAAAGTGTCGCCAAATATCATTCCAAACTGATTGTAATGATAAACGCACCCACTAAAAACGCCCGCCACCGTCTATTTTTCCGTGCCAAGCGCGGTCATGTTGTCGGTATTTCGATCAGAGAGACATCAATGCAAATCAGTGTCGTCTGGCCAAAAAATTACAATACTATTGATTTCCCGACTCTTCCACCAGAGGTTACTGGATTGTCTTTGAATGAACCGGGTCCGTCGACTGCTGGACAAATTAGTCCGTAATTGTTTTTTTCTGAATCTTATTTTTTGCTTTATTTGAATTATCTGGCTTGTAGCTGACTATTTTATTGTTTTCTGATTGTTTTCCCTTTTTCATATTCTTATAGATTTAAGAATAAAACATTTCTTTTCTGTTCTCTATATGTTTATACAAAATGTGCTCCGGATGAATATAAGTTTTTCAAAATCGATTTAAAGAATAGAGCTGAATATTTGATTTTCAAATAGAAATCTGTTCATTGTGAAAGGAAATATGTGCATACATATAAAAATTTGGAAAGCATTACATATTTCAAATACCTCGTAACAAACAGTAACCTGGATGAGAAATGAAAGATCAACAATAATAACATTTAGGTAAAAAAGAAAACTAATCGACCAGAGAATTCCACCATTTTTCTATATCTTTTGTAGTTTCACTCGGCATCAGTGGTCTCGGGCTTCCCTGTGTCGATGGTACCGGTAAAGAGGGAGTTATCACCTGGAATAATGTACTTCAGAAGTCATTAGACAAGAAAAACAAACCAGTGGCGAATGATCTCCCATAAATTCGTCAGATAAGTTTTTGGGTGAGAATGGAGAATCTTCTCCACGTTCTTCCACATCCGGAAGATCATAAACGTTCAATTGTAGCTGAAATTTTGGGATTGG</canonical>
            <polymorphic>TCATATTTCTTTCCAGATTTTCTCCGACTACCCACCATTTCAAGGTGGCCAAGGATTCACACTGAACACCACCGACGAAATCGACCTTCATTTGTTCAAAAGTGTCGCCAAATATCATTCCAAACTGATTGTAATGATAAACGCACCCACTAAAAACGCCCGCCACCGTCTATTTTTCCGTGCCAAGCGCGGTCATGTTGTCGGTATTTCGATCAGAGAGACATCAATGCAAATCAGTGTCGTCTGGCCAAAAAATTACAATACTATTGATTTCCCGACTCTTCCACCAGAGGTTACTGGATTGTCTTTGAATGAACCGGGTCCGTCGACTGCTGGACAAATTAGTCCGTAATTGTTTTTTTCTGAATCTTATTTTTTGCTTTATTTGAATTATCTGGCTTGTAGCTGACTATTTTATTGTTTTCTGATTGTTTTCCCTTTTTCATATTCTTATAGATTTAAGAATAAAACATTTCTTTTCTGTTCTCTATATGTTTATWCAAAATGTGCTCCGGATGAATATAAGTTTTTCAAAATCGATTTAAAGAATAGAGCTGAATATTTGATTTTCAAATAGAAATCTGTTCATTGTGAAAGGAAATATGTGCATACATATAAAAATTTGGAAAGCATTACATATTTCAAATACCTCGTAACAAACAGTAACCTGGATGAGAAATGAAAGATCAACAATAATAACATTTAGGTAAAAAAGAAAACTAATCGACCAGAGAATTCCACCATTTTTCTATATCTTTTGTAGTTTCACTCGGCATCAGTGGTCTCGGGCTTCCCTGTGTCGATGGTACCGGTAAAGAGGGAGTTATCACCTGGAATAATGTACTTCAGAAGTCATTAGACAAGAAAAACAAACCAGTGGCGAATGATCTCCCATAAATTCGTCAGATAAGTTTTTGGGTGAGAATGGAGAATCTTCTCCACGTTCTTCCACATCCGGAAGATCATAAACGTTCAATTGTAGCTGAAATTTTGGGATTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATCTGGCTTGTAGCTGACTAT</pcr_primer_p1>
		<pcr_primer_p2>TGTAATGCTTTCCAAATTTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTATCTGGCTTGTAGCTGACTATTTTATTGTTTTCTGATTGTTTTCCCTTTTTCATATTCTTATAGATTTAAGAATAAAACATTTCTTTTCTGTTCTCTATATGTTTATACAAAATGTGCTCCGGATGAATATAAGTTTTTCAAAATCGATTTAAAGAATAGAGCTGAATATTTGATTTTCAAATAGAAATCTGTTCATTGTGAAAGGAAATATGTGCATACATATAAAAATTTGGAAAGCATTACA</canonical_amplicon>
		<polymorphic_amplicon>TTATCTGGCTTGTAGCTGACTATTTTATTGTTTTCTGATTGTTTTCCCTTTTTCATATTCTTATAGATTTAAGAATAAAACATTTCTTTTCTGTTCTCTATATGTTTATWCAAAATGTGCTCCGGATGAATATAAGTTTTTCAAAATCGATTTAAAGAATAGAGCTGAATATTTGATTTTCAAATAGAAATCTGTTCATTGTGAAAGGAAATATGTGCATACATATAAAAATTTGGAAAGCATTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21112</snp_id>
        <super_contig>c013101329.Contig1</super_contig>
        <contig_pos>77645</contig_pos>
        <strand>+</strand>
        <context>TGTGAAAGGA[A/C]ATATGTGCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAGAGCTGAATATTTGATTTTCAAATAGAAATCTGTTCATTGTGAAAGGA</left_flank>
        <right_flank>ATATGTGCATACATATAAAAATTTGGAAAGCATTACATATTTCAAATACC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGTCGCCAAATATCATTCCAAACTGATTGTAATGATAAACGCACCCACTAAAAACGCCCGCCACCGTCTATTTTTCCGTGCCAAGCGCGGTCATGTTGTCGGTATTTCGATCAGAGAGACATCAATGCAAATCAGTGTCGTCTGGCCAAAAAATTACAATACTATTGATTTCCCGACTCTTCCACCAGAGGTTACTGGATTGTCTTTGAATGAACCGGGTCCGTCGACTGCTGGACAAATTAGTCCGTAATTGTTTTTTTCTGAATCTTATTTTTTGCTTTATTTGAATTATCTGGCTTGTAGCTGACTATTTTATTGTTTTCTGATTGTTTTCCCTTTTTCATATTCTTATAGATTTAAGAATAAAACATTTCTTTTCTGTTCTCTATATGTTTATACAAAATGTGCTCCGGATGAATATAAGTTTTTCAAAATCGATTTAAAGAATAGAGCTGAATATTTGATTTTCAAATAGAAATCTGTTCATTGTGAAAGGAAATATGTGCATACATATAAAAATTTGGAAAGCATTACATATTTCAAATACCTCGTAACAAACAGTAACCTGGATGAGAAATGAAAGATCAACAATAATAACATTTAGGTAAAAAAGAAAACTAATCGACCAGAGAATTCCACCATTTTTCTATATCTTTTGTAGTTTCACTCGGCATCAGTGGTCTCGGGCTTCCCTGTGTCGATGGTACCGGTAAAGAGGGAGTTATCACCTGGAATAATGTACTTCAGAAGTCATTAGACAAGAAAAACAAACCAGTGGCGAATGATCTCCCATAAATTCGTCAGATAAGTTTTTGGGTGAGAATGGAGAATCTTCTCCACGTTCTTCCACATCCGGAAGATCATAAACGTTCAATTGTAGCTGAAATTTTGGGATTGGAAAGCTGGAAACCTAGATTACTTTCAACATGAAAAAGCTAAGGCTTCATGAAAAAAAAAATAAATGGCGACACGAACTCACATGAAAATTCTTGGGCTGT</canonical>
            <polymorphic>AGTGTCGCCAAATATCATTCCAAACTGATTGTAATGATAAACGCACCCACTAAAAACGCCCGCCACCGTCTATTTTTCCGTGCCAAGCGCGGTCATGTTGTCGGTATTTCGATCAGAGAGACATCAATGCAAATCAGTGTCGTCTGGCCAAAAAATTACAATACTATTGATTTCCCGACTCTTCCACCAGAGGTTACTGGATTGTCTTTGAATGAACCGGGTCCGTCGACTGCTGGACAAATTAGTCCGTAATTGTTTTTTTCTGAATCTTATTTTTTGCTTTATTTGAATTATCTGGCTTGTAGCTGACTATTTTATTGTTTTCTGATTGTTTTCCCTTTTTCATATTCTTATAGATTTAAGAATAAAACATTTCTTTTCTGTTCTCTATATGTTTATACAAAATGTGCTCCGGATGAATATAAGTTTTTCAAAATCGATTTAAAGAATAGAGCTGAATATTTGATTTTCAAATAGAAATCTGTTCATTGTGAAAGGAMATATGTGCATACATATAAAAATTTGGAAAGCATTACATATTTCAAATACCTCGTAACAAACAGTAACCTGGATGAGAAATGAAAGATCAACAATAATAACATTTAGGTAAAAAAGAAAACTAATCGACCAGAGAATTCCACCATTTTTCTATATCTTTTGTAGTTTCACTCGGCATCAGTGGTCTCGGGCTTCCCTGTGTCGATGGTACCGGTAAAGAGGGAGTTATCACCTGGAATAATGTACTTCAGAAGTCATTAGACAAGAAAAACAAACCAGTGGCGAATGATCTCCCATAAATTCGTCAGATAAGTTTTTGGGTGAGAATGGAGAATCTTCTCCACGTTCTTCCACATCCGGAAGATCATAAACGTTCAATTGTAGCTGAAATTTTGGGATTGGAAAGCTGGAAACCTAGATTACTTTCAACATGAAAAAGCTAAGGCTTCATGAAAAAAAAAATAAATGGCGACACGAACTCACATGAAAATTCTTGGGCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTGTTTTCCCTTTTTCATATT</pcr_primer_p1>
		<pcr_primer_p2>CTCATCCAGGTTACTGTTTGTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATTGTTTTCCCTTTTTCATATTCTTATAGATTTAAGAATAAAACATTTCTTTTCTGTTCTCTATATGTTTATACAAAATGTGCTCCGGATGAATATAAGTTTTTCAAAATCGATTTAAAGAATAGAGCTGAATATTTGATTTTCAAATAGAAATCTGTTCATTGTGAAAGGAAATATGTGCATACATATAAAAATTTGGAAAGCATTACATATTTCAAATACCTCGTAACAAACAGTAACCTGGATGAG</canonical_amplicon>
		<polymorphic_amplicon>GATTGTTTTCCCTTTTTCATATTCTTATAGATTTAAGAATAAAACATTTCTTTTCTGTTCTCTATATGTTTATACAAAATGTGCTCCGGATGAATATAAGTTTTTCAAAATCGATTTAAAGAATAGAGCTGAATATTTGATTTTCAAATAGAAATCTGTTCATTGTGAAAGGAMATATGTGCATACATATAAAAATTTGGAAAGCATTACATATTTCAAATACCTCGTAACAAACAGTAACCTGGATGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21113</snp_id>
        <super_contig>c013101329.Contig1</super_contig>
        <contig_pos>77889</contig_pos>
        <strand>+</strand>
        <context>GAATAATGTA[C/T]TTCAGAAGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTGTGTCGATGGTACCGGTAAAGAGGGAGTTATCACCTGGAATAATGTA</left_flank>
        <right_flank>TTCAGAAGTCATTAGACAAGAAAAACAAACCAGTGGCGAATGATCTCCCA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCCGTAATTGTTTTTTTCTGAATCTTATTTTTTGCTTTATTTGAATTATCTGGCTTGTAGCTGACTATTTTATTGTTTTCTGATTGTTTTCCCTTTTTCATATTCTTATAGATTTAAGAATAAAACATTTCTTTTCTGTTCTCTATATGTTTATACAAAATGTGCTCCGGATGAATATAAGTTTTTCAAAATCGATTTAAAGAATAGAGCTGAATATTTGATTTTCAAATAGAAATCTGTTCATTGTGAAAGGAAATATGTGCATACATATAAAAATTTGGAAAGCATTACATATTTCAAATACCTCGTAACAAACAGTAACCTGGATGAGAAATGAAAGATCAACAATAATAACATTTAGGTAAAAAAGAAAACTAATCGACCAGAGAATTCCACCATTTTTCTATATCTTTTGTAGTTTCACTCGGCATCAGTGGTCTCGGGCTTCCCTGTGTCGATGGTACCGGTAAAGAGGGAGTTATCACCTGGAATAATGTACTTCAGAAGTCATTAGACAAGAAAAACAAACCAGTGGCGAATGATCTCCCATAAATTCGTCAGATAAGTTTTTGGGTGAGAATGGAGAATCTTCTCCACGTTCTTCCACATCCGGAAGATCATAAACGTTCAATTGTAGCTGAAATTTTGGGATTGGAAAGCTGGAAACCTAGATTACTTTCAACATGAAAAAGCTAAGGCTTCATGAAAAAAAAAATAAATGGCGACACGAACTCACATGAAAATTCTTGGGCTGTCCGGAACCCTTTCGGATTTCCGAACTAGCTCGTTTCGGAAGCAACTGGACGGTTTCAGGCGATCGCGACTGCAATGGAAATGAAAAAAAAATGGACAAAGCAGAAGGCAATACTATGATGGGGAAAACCGGAGGGGTGAAAAATTAAAAGACGAAACAAAACTCTGACTTTACAGAGACAATGAATGGACGTGGAATTGGCTCACTACAAACTACAAACTTCTTTTTCAGGTCTTACACTCACC</canonical>
            <polymorphic>GTCCGTAATTGTTTTTTTCTGAATCTTATTTTTTGCTTTATTTGAATTATCTGGCTTGTAGCTGACTATTTTATTGTTTTCTGATTGTTTTCCCTTTTTCATATTCTTATAGATTTAAGAATAAAACATTTCTTTTCTGTTCTCTATATGTTTATACAAAATGTGCTCCGGATGAATATAAGTTTTTCAAAATCGATTTAAAGAATAGAGCTGAATATTTGATTTTCAAATAGAAATCTGTTCATTGTGAAAGGAAATATGTGCATACATATAAAAATTTGGAAAGCATTACATATTTCAAATACCTCGTAACAAACAGTAACCTGGATGAGAAATGAAAGATCAACAATAATAACATTTAGGTAAAAAAGAAAACTAATCGACCAGAGAATTCCACCATTTTTCTATATCTTTTGTAGTTTCACTCGGCATCAGTGGTCTCGGGCTTCCCTGTGTCGATGGTACCGGTAAAGAGGGAGTTATCACCTGGAATAATGTAYTTCAGAAGTCATTAGACAAGAAAAACAAACCAGTGGCGAATGATCTCCCATAAATTCGTCAGATAAGTTTTTGGGTGAGAATGGAGAATCTTCTCCACGTTCTTCCACATCCGGAAGATCATAAACGTTCAATTGTAGCTGAAATTTTGGGATTGGAAAGCTGGAAACCTAGATTACTTTCAACATGAAAAAGCTAAGGCTTCATGAAAAAAAAAATAAATGGCGACACGAACTCACATGAAAATTCTTGGGCTGTCCGGAACCCTTTCGGATTTCCGAACTAGCTCGTTTCGGAAGCAACTGGACGGTTTCAGGCGATCGCGACTGCAATGGAAATGAAAAAAAAATGGACAAAGCAGAAGGCAATACTATGATGGGGAAAACCGGAGGGGTGAAAAATTAAAAGACGAAACAAAACTCTGACTTTACAGAGACAATGAATGGACGTGGAATTGGCTCACTACAAACTACAAACTTCTTTTTCAGGTCTTACACTCACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 463 35</canonical_bands>
                <polymorphic_bands>537 463</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACCATTTTTCTATATCTTTTG</pcr_primer_p1>
		<pcr_primer_p2>AGCTACAATTGAACGTTTATGAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCACCATTTTTCTATATCTTTTGTAGTTTCACTCGGCATCAGTGGTCTCGGGCTTCCCTGTGTCGATGGTACCGGTAAAGAGGGAGTTATCACCTGGAATAATGTACTTCAGAAGTCATTAGACAAGAAAAACAAACCAGTGGCGAATGATCTCCCATAAATTCGTCAGATAAGTTTTTGGGTGAGAATGGAGAATCTTCTCCACGTTCTTCCACATCCGGAAGATCATAAACGTTCAATTGTAGCT</canonical_amplicon>
		<polymorphic_amplicon>CCACCATTTTTCTATATCTTTTGTAGTTTCACTCGGCATCAGTGGTCTCGGGCTTCCCTGTGTCGATGGTACCGGTAAAGAGGGAGTTATCACCTGGAATAATGTAYTTCAGAAGTCATTAGACAAGAAAAACAAACCAGTGGCGAATGATCTCCCATAAATTCGTCAGATAAGTTTTTGGGTGAGAATGGAGAATCTTCTCCACGTTCTTCCACATCCGGAAGATCATAAACGTTCAATTGTAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21114</snp_id>
        <super_contig>c013101329.Contig1</super_contig>
        <contig_pos>78237</contig_pos>
        <strand></strand>
        <context>GWAAAAAAAA[T/A]GGACAAAGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CAACTGGACGGTTTCAGGCGATCGCGACTGCAATGGAAATGAAAAAAAAA</left_flank>
        <right_flank>GGACAAAGCAGAAGGCAATACTATGATGGGGAAAACCGGAGGGGTGAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAATAACATTTAGGTAAAAAAGAAAACTAATCGACCAGAGAATTCCACCATTTTTCTATATCTTTTGTAGTTTCACTCGGCATCAGTGGTCTCGGGCTTCCCTGTGTCGATGGTACCGGTAAAGAGGGAGTTATCACCTGGAATAATGTACTTCAGAAGTCATTAGACAAGAAAAACAAACCAGTGGCGAATGATCTCCCATAAATTCGTCAGATAAGTTTTTGGGTGAGAATGGAGAATCTTCTCCACGTTCTTCCACATCCGGAAGATCATAAACGTTCAATTGTAGCTGAAATTTTGGGATTGGAAAGCTGGAAACCTAGATTACTTTCAACATGAAAAAGCTAAGGCTTCATGAAAAAAAAAATAAATGGCGACACGAACTCACATGAAAATTCTTGGGCTGTCCGGAACCCTTTCGGATTTCCGAACTAGCTCGTTTCGGAAGCAACTGGACGGTTTCAGGCGATCGCGACTGCAATGGAAATGAAAAAAAAATGGACAAAGCAGAAGGCAATACTATGATGGGGAAAACCGGAGGGGTGAAAAATTAAAAGACGAAACAAAACTCTGACTTTACAGAGACAATGAATGGACGTGGAATTGGCTCACTACAAACTACAAACTTCTTTTTCAGGTCTTACACTCACCTTTACTTGCTTTTTCTCACTTGAGCTTCCGACCATGAACTTTCGAGCAGCCTCTTGGAATAGGCCTGTTCTCTGAAAACAATTGTCACATTTTAATCGTTCAACTCAAGCCAACTAACCGAAAGAACATCCGGAATACTACCCCTCCGATTCTTAACAGCAGCCTTCTTCCTAATCGGTGGAGGCGTGTCTTCTTCACTACTCTCCGTCTCTTCTGTATCGACACTGTTTCTTCCATTACTCTCAAATCGAAGTCTTTGCTGCACAGTTTCTTCGTGAGAAATCGACGAGTGTCCAGACGAATGGACAACCGGATGGCCTCCAGTTCCAGATGGAATCACACCTTCCA</canonical>
            <polymorphic>ATAATAACATTTAGGTAAAAAAGAAAACTAATCGACCAGAGAATTCCACCATTTTTCTATATCTTTTGTAGTTTCACTCGGCATCAGTGGTCTCGGGCTTCCCTGTGTCGATGGTACCGGTAAAGAGGGAGTTATCACCTGGAATAATGTACTTCAGAAGTCATTAGACAAGAAAAACAAACCAGTGGCGAATGATCTCCCATAAATTCGTCAGATAAGTTTTTGGGTGAGAATGGAGAATCTTCTCCACGTTCTTCCACATCCGGAAGATCATAAACGTTCAATTGTAGCTGAAATTTTGGGATTGGAAAGCTGGAAACCTAGATTACTTTCAACATGAAAAAGCTAAGGCTTCATGAAAAAAAAAATAAATGGCGACACGAACTCACATGAAAATTCTTGGGCTGTCCGGAACCCTTTCGGATTTCCGAACTAGCTCGTTTCGGAAGCAACTGGACGGTTTCAGGCGATCGCGACTGCAATGGAAATGAAAAAAAAAWGGACAAAGCAGAAGGCAATACTATGATGGGGAAAACCGGAGGGGTGAAAAATTAAAAGACGAAACAAAACTCTGACTTTACAGAGACAATGAATGGACGTGGAATTGGCTCACTACAAACTACAAACTTCTTTTTCAGGTCTTACACTCACCTTTACTTGCTTTTTCTCACTTGAGCTTCCGACCATGAACTTTCGAGCAGCCTCTTGGAATAGGCCTGTTCTCTGAAAACAATTGTCACATTTTAATCGTTCAACTCAAGCCAACTAACCGAAAGAACATCCGGAATACTACCCCTCCGATTCTTAACAGCAGCCTTCTTCCTAATCGGTGGAGGCGTGTCTTCTTCACTACTCTCCGTCTCTTCTGTATCGACACTGTTTCTTCCATTACTCTCAAATCGAAGTCTTTGCTGCACAGTTTCTTCGTGAGAAATCGACGAGTGTCCAGACGAATGGACAACCGGATGGCCTCCAGTTCCAGATGGAATCACACCTTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTCAACATGAAAAAGCTAAG</pcr_primer_p1>
		<pcr_primer_p2>TCAGAGTTTTGTTTCGTCTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACTTTCAACATGAAAAAGCTAAGGCTTCATGAAAAAAAAAATAAATGGCGACACGAACTCACATGAAAATTCTTGGGCTGTCCGGAACCCTTTCGGATTTCCGAACTAGCTCGTTTCGGAAGCAACTGGACGGTTTCAGGCGATCGCGACTGCAATGGAAATGAAAAAAAAATGGACAAAGCAGAAGGCAATACTATGATGGGGAAAACCGGAGGGGTGAAAAATTAAAAGACGAAACAAAACTCTGA</canonical_amplicon>
		<polymorphic_amplicon>ACTTTCAACATGAAAAAGCTAAGGCTTCATGAAAAAAAAAATAAATGGCGACACGAACTCACATGAAAATTCTTGGGCTGTCCGGAACCCTTTCGGATTTCCGAACTAGCTCGTTTCGGAAGCAACTGGACGGTTTCAGGCGATCGCGACTGCAATGGAAATGAAAAAAAAAWGGACAAAGCAGAAGGCAATACTATGATGGGGAAAACCGGAGGGGTGAAAAATTAAAAGACGAAACAAAACTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21115</snp_id>
        <super_contig>c013101329.Contig1</super_contig>
        <contig_pos>78187</contig_pos>
        <strand>+</strand>
        <context>GTTTCGGAAG[C/T]AACTGGACGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGGCTGTCCGGAACCCTTTCGGATTTCCGAACTAGCTCGTTTCGGAAG</left_flank>
        <right_flank>AACTGGACGGTTTCAGGCGATCGCGACTGCAATGGAAATGAAAAAAAAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATACCTCGTAACAAACAGTAACCTGGATGAGAAATGAAAGATCAACAATAATAACATTTAGGTAAAAAAGAAAACTAATCGACCAGAGAATTCCACCATTTTTCTATATCTTTTGTAGTTTCACTCGGCATCAGTGGTCTCGGGCTTCCCTGTGTCGATGGTACCGGTAAAGAGGGAGTTATCACCTGGAATAATGTACTTCAGAAGTCATTAGACAAGAAAAACAAACCAGTGGCGAATGATCTCCCATAAATTCGTCAGATAAGTTTTTGGGTGAGAATGGAGAATCTTCTCCACGTTCTTCCACATCCGGAAGATCATAAACGTTCAATTGTAGCTGAAATTTTGGGATTGGAAAGCTGGAAACCTAGATTACTTTCAACATGAAAAAGCTAAGGCTTCATGAAAAAAAAAATAAATGGCGACACGAACTCACATGAAAATTCTTGGGCTGTCCGGAACCCTTTCGGATTTCCGAACTAGCTCGTTTCGGAAGCAACTGGACGGTTTCAGGCGATCGCGACTGCAATGGAAATGAAAAAAAAATGGACAAAGCAGAAGGCAATACTATGATGGGGAAAACCGGAGGGGTGAAAAATTAAAAGACGAAACAAAACTCTGACTTTACAGAGACAATGAATGGACGTGGAATTGGCTCACTACAAACTACAAACTTCTTTTTCAGGTCTTACACTCACCTTTACTTGCTTTTTCTCACTTGAGCTTCCGACCATGAACTTTCGAGCAGCCTCTTGGAATAGGCCTGTTCTCTGAAAACAATTGTCACATTTTAATCGTTCAACTCAAGCCAACTAACCGAAAGAACATCCGGAATACTACCCCTCCGATTCTTAACAGCAGCCTTCTTCCTAATCGGTGGAGGCGTGTCTTCTTCACTACTCTCCGTCTCTTCTGTATCGACACTGTTTCTTCCATTACTCTCAAATCGAAGTCTTTGCTGCACAGTTTCTTCGTGAGAAATCGACGAGTGTCCAGA</canonical>
            <polymorphic>CAAATACCTCGTAACAAACAGTAACCTGGATGAGAAATGAAAGATCAACAATAATAACATTTAGGTAAAAAAGAAAACTAATCGACCAGAGAATTCCACCATTTTTCTATATCTTTTGTAGTTTCACTCGGCATCAGTGGTCTCGGGCTTCCCTGTGTCGATGGTACCGGTAAAGAGGGAGTTATCACCTGGAATAATGTACTTCAGAAGTCATTAGACAAGAAAAACAAACCAGTGGCGAATGATCTCCCATAAATTCGTCAGATAAGTTTTTGGGTGAGAATGGAGAATCTTCTCCACGTTCTTCCACATCCGGAAGATCATAAACGTTCAATTGTAGCTGAAATTTTGGGATTGGAAAGCTGGAAACCTAGATTACTTTCAACATGAAAAAGCTAAGGCTTCATGAAAAAAAAAATAAATGGCGACACGAACTCACATGAAAATTCTTGGGCTGTCCGGAACCCTTTCGGATTTCCGAACTAGCTCGTTTCGGAAGYAACTGGACGGTTTCAGGCGATCGCGACTGCAATGGAAATGAAAAAAAAATGGACAAAGCAGAAGGCAATACTATGATGGGGAAAACCGGAGGGGTGAAAAATTAAAAGACGAAACAAAACTCTGACTTTACAGAGACAATGAATGGACGTGGAATTGGCTCACTACAAACTACAAACTTCTTTTTCAGGTCTTACACTCACCTTTACTTGCTTTTTCTCACTTGAGCTTCCGACCATGAACTTTCGAGCAGCCTCTTGGAATAGGCCTGTTCTCTGAAAACAATTGTCACATTTTAATCGTTCAACTCAAGCCAACTAACCGAAAGAACATCCGGAATACTACCCCTCCGATTCTTAACAGCAGCCTTCTTCCTAATCGGTGGAGGCGTGTCTTCTTCACTACTCTCCGTCTCTTCTGTATCGACACTGTTTCTTCCATTACTCTCAAATCGAAGTCTTTGCTGCACAGTTTCTTCGTGAGAAATCGACGAGTGTCCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTCAACATGAAAAAGCTAAG</pcr_primer_p1>
		<pcr_primer_p2>TCAGAGTTTTGTTTCGTCTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACTTTCAACATGAAAAAGCTAAGGCTTCATGAAAAAAAAAATAAATGGCGACACGAACTCACATGAAAATTCTTGGGCTGTCCGGAACCCTTTCGGATTTCCGAACTAGCTCGTTTCGGAAGCAACTGGACGGTTTCAGGCGATCGCGACTGCAATGGAAATGAAAAAAAAATGGACAAAGCAGAAGGCAATACTATGATGGGGAAAACCGGAGGGGTGAAAAATTAAAAGACGAAACAAAACTCTGA</canonical_amplicon>
		<polymorphic_amplicon>ACTTTCAACATGAAAAAGCTAAGGCTTCATGAAAAAAAAAATAAATGGCGACACGAACTCACATGAAAATTCTTGGGCTGTCCGGAACCCTTTCGGATTTCCGAACTAGCTCGTTTCGGAAGYAACTGGACGGTTTCAGGCGATCGCGACTGCAATGGAAATGAAAAAAAAATGGACAAAGCAGAAGGCAATACTATGATGGGGAAAACCGGAGGGGTGAAAAATTAAAAGACGAAACAAAACTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21137</snp_id>
        <super_contig>c013101329.Contig1</super_contig>
        <contig_pos>130271</contig_pos>
        <strand></strand>
        <context>GCAATGGACG[C/A]GAAATCAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTTTGCAGATCGACAACAAGAAGAAACTCTCTGAAGACTGCAATGGACG</left_flank>
        <right_flank>GAAATCAAAACTCAGCTCTGTAAGGTTGGAGATGATTACAGATGGGTTGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGCTTTAGTTGAAGTTTCATTTTAAAAAATGAAAATGAACGTATTCGTCTACAGTTCGATTCCGAAAGGACAAAATACGACTTATTTTCTGTGGATTTGCGACAACCATCAGTTTGTCAATATTTAGAAAATGTCTGTTAATTCAAAGAATGTTTTAGAACATCCATATTCACTTCGAAAGCTCACACTCTTGCTCTGGGTCATTTTTTCGAAGGAATCTTCAAAGAAACACCAAACGAGAAGTCAAAATGGCAATGTGTGAAGTACATGAAACCTGCTGAACCTCTTCTGAAAGGAGAAATGGTTGCAAATCACGTTGTCCTGAGAACTTCAGTGGAGAAGTATAAGCCAGAAGATGCTTCGAAAAATTGGTATCCTCAAGTCCATTCCAAGCATCTCGGAAAGATCGTAAGTTTTCTAAATGAAAATTTTAGAGCCAAGTAATTTTTTTTGCAGATCGACAACAAGAAGAAACTCTCTGAAGACTGCAATGGACGCGAAATCAAAACTCAGCTCTGTAAGGTTGGAGATGATTACAGATGGGTTGTCATTGAACTTCTTTAAAAAATAAATATTTATTCATTCTAACTTTGGCTTACTATTCTTGAAACACTTAAGAATCGTTTTCACTAATTTCACAAAGATGCAAATTACTAGAACTAAAACTAGTATCAACAGAGTAATAATATCCAGAAAGTAGTAGACGAAAATATTTTGGTGTCTTCCATAGTTATCCATTGATGGAAGTTTCCCGAATCTGGCAGCAAATTCAACGTGTTTCACCAAAACTTCCTTCGCATTCGTCGGCAGATTCTTCAACATCTCAGCGACCCTTCTGGCATTTTTTGCGTATCTGCATAAAACAAAATTCTGTGGATTCGAATTCCAGAAAAATAACGAATACCTCGGATTCGTCAGCACGTCGTGAAGGGTGTCTCGTACAAGATCAGAATTGATTAAATCAGTTTTCTGTAGGACTGCTGCTCCTCCATGCCGTT</canonical>
            <polymorphic>AAAGCTTTAGTTGAAGTTTCATTTTAAAAAATGAAAATGAACGTATTCGTCTACAGTTCGATTCCGAAAGGACAAAATACGACTTATTTTCTGTGGATTTGCGACAACCATCAGTTTGTCAATATTTAGAAAATGTCTGTTAATTCAAAGAATGTTTTAGAACATCCATATTCACTTCGAAAGCTCACACTCTTGCTCTGGGTCATTTTTTCGAAGGAATCTTCAAAGAAACACCAAACGAGAAGTCAAAATGGCAATGTGTGAAGTACATGAAACCTGCTGAACCTCTTCTGAAAGGAGAAATGGTTGCAAATCACGTTGTCCTGAGAACTTCAGTGGAGAAGTATAAGCCAGAAGATGCTTCGAAAAATTGGTATCCTCAAGTCCATTCCAAGCATCTCGGAAAGATCGTAAGTTTTCTAAATGAAAATTTTAGAGCCAAGTAATTTTTTTTGCAGATCGACAACAAGAAGAAACTCTCTGAAGACTGCAATGGACGMGAAATCAAAACTCAGCTCTGTAAGGTTGGAGATGATTACAGATGGGTTGTCATTGAACTTCTTTAAAAAATAAATATTTATTCATTCTAACTTTGGCTTACTATTCTTGAAACACTTAAGAATCGTTTTCACTAATTTCACAAAGATGCAAATTACTAGAACTAAAACTAGTATCAACAGAGTAATAATATCCAGAAAGTAGTAGACGAAAATATTTTGGTGTCTTCCATAGTTATCCATTGATGGAAGTTTCCCGAATCTGGCAGCAAATTCAACGTGTTTCACCAAAACTTCCTTCGCATTCGTCGGCAGATTCTTCAACATCTCAGCGACCCTTCTGGCATTTTTTGCGTATCTGCATAAAACAAAATTCTGTGGATTCGAATTCCAGAAAAATAACGAATACCTCGGATTCGTCAGCACGTCGTGAAGGGTGTCTCGTACAAGATCAGAATTGATTAAATCAGTTTTCTGTAGGACTGCTGCTCCTCCATGCCGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>496 351 153</canonical_bands>
                <polymorphic_bands>847 153</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGAAAGATCGTAAGTTTTCTA</pcr_primer_p1>
		<pcr_primer_p2>GCATCTTTGTGAAATTAGTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGGAAAGATCGTAAGTTTTCTAAATGAAAATTTTAGAGCCAAGTAATTTTTTTTGCAGATCGACAACAAGAAGAAACTCTCTGAAGACTGCAATGGACGCGAAATCAAAACTCAGCTCTGTAAGGTTGGAGATGATTACAGATGGGTTGTCATTGAACTTCTTTAAAAAATAAATATTTATTCATTCTAACTTTGGCTTACTATTCTTGAAACACTTAAGAATCGTTTTCACTAATTTCACAAAGATGC</canonical_amplicon>
		<polymorphic_amplicon>CGGAAAGATCGTAAGTTTTCTAAATGAAAATTTTAGAGCCAAGTAATTTTTTTTGCAGATCGACAACAAGAAGAAACTCTCTGAAGACTGCAATGGACGMGAAATCAAAACTCAGCTCTGTAAGGTTGGAGATGATTACAGATGGGTTGTCATTGAACTTCTTTAAAAAATAAATATTTATTCATTCTAACTTTGGCTTACTATTCTTGAAACACTTAAGAATCGTTTTCACTAATTTCACAAAGATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21138</snp_id>
        <super_contig>c013101329.Contig1</super_contig>
        <contig_pos>130125</contig_pos>
        <strand></strand>
        <context>GTATAAGCCA[G/A]AAGATGCTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGGTTGCAAATCACGTTGTCCTGAGAACTTCAGTGGAGAAGTATAAGCCA</left_flank>
        <right_flank>AAGATGCTTCGAAAAATTGGTATCCTCAAGTCCATTCCAAGCATCTCGGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCAACGAAAAACATAATATTCAATAGCATGAAGTACTGTGCTGACGTCAAGGAACCAATGAAGTCATTCTCATCTGATGTCATTGTTGGTACAGGATTTGCAATGAGCAACCTGAACATCAGCAAAAAGAAAAAGGTAGTAATGAAAGCTTTAGTTGAAGTTTCATTTTAAAAAATGAAAATGAACGTATTCGTCTACAGTTCGATTCCGAAAGGACAAAATACGACTTATTTTCTGTGGATTTGCGACAACCATCAGTTTGTCAATATTTAGAAAATGTCTGTTAATTCAAAGAATGTTTTAGAACATCCATATTCACTTCGAAAGCTCACACTCTTGCTCTGGGTCATTTTTTCGAAGGAATCTTCAAAGAAACACCAAACGAGAAGTCAAAATGGCAATGTGTGAAGTACATGAAACCTGCTGAACCTCTTCTGAAAGGAGAAATGGTTGCAAATCACGTTGTCCTGAGAACTTCAGTGGAGAAGTATAAGCCAGAAGATGCTTCGAAAAATTGGTATCCTCAAGTCCATTCCAAGCATCTCGGAAAGATCGTAAGTTTTCTAAATGAAAATTTTAGAGCCAAGTAATTTTTTTTGCAGATCGACAACAAGAAGAAACTCTCTGAAGACTGCAATGGACGCGAAATCAAAACTCAGCTCTGTAAGGTTGGAGATGATTACAGATGGGTTGTCATTGAACTTCTTTAAAAAATAAATATTTATTCATTCTAACTTTGGCTTACTATTCTTGAAACACTTAAGAATCGTTTTCACTAATTTCACAAAGATGCAAATTACTAGAACTAAAACTAGTATCAACAGAGTAATAATATCCAGAAAGTAGTAGACGAAAATATTTTGGTGTCTTCCATAGTTATCCATTGATGGAAGTTTCCCGAATCTGGCAGCAAATTCAACGTGTTTCACCAAAACTTCCTTCGCATTCGTCGGCAGATTCTTCAACATCTCAGCGACCCTTCTGGCATTTTTTGCGTA</canonical>
            <polymorphic>CTTCAACGAAAAACATAATATTCAATAGCATGAAGTACTGTGCTGACGTCAAGGAACCAATGAAGTCATTCTCATCTGATGTCATTGTTGGTACAGGATTTGCAATGAGCAACCTGAACATCAGCAAAAAGAAAAAGGTAGTAATGAAAGCTTTAGTTGAAGTTTCATTTTAAAAAATGAAAATGAACGTATTCGTCTACAGTTCGATTCCGAAAGGACAAAATACGACTTATTTTCTGTGGATTTGCGACAACCATCAGTTTGTCAATATTTAGAAAATGTCTGTTAATTCAAAGAATGTTTTAGAACATCCATATTCACTTCGAAAGCTCACACTCTTGCTCTGGGTCATTTTTTCGAAGGAATCTTCAAAGAAACACCAAACGAGAAGTCAAAATGGCAATGTGTGAAGTACATGAAACCTGCTGAACCTCTTCTGAAAGGAGAAATGGTTGCAAATCACGTTGTCCTGAGAACTTCAGTGGAGAAGTATAAGCCARAAGATGCTTCGAAAAATTGGTATCCTCAAGTCCATTCCAAGCATCTCGGAAAGATCGTAAGTTTTCTAAATGAAAATTTTAGAGCCAAGTAATTTTTTTTGCAGATCGACAACAAGAAGAAACTCTCTGAAGACTGCAATGGACGCGAAATCAAAACTCAGCTCTGTAAGGTTGGAGATGATTACAGATGGGTTGTCATTGAACTTCTTTAAAAAATAAATATTTATTCATTCTAACTTTGGCTTACTATTCTTGAAACACTTAAGAATCGTTTTCACTAATTTCACAAAGATGCAAATTACTAGAACTAAAACTAGTATCAACAGAGTAATAATATCCAGAAAGTAGTAGACGAAAATATTTTGGTGTCTTCCATAGTTATCCATTGATGGAAGTTTCCCGAATCTGGCAGCAAATTCAACGTGTTTCACCAAAACTTCCTTCGCATTCGTCGGCAGATTCTTCAACATCTCAGCGACCCTTCTGGCATTTTTTGCGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCTCTTCTGAAAGGAGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CAACCTTACAGAGCTGAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AACCTCTTCTGAAAGGAGAAATGGTTGCAAATCACGTTGTCCTGAGAACTTCAGTGGAGAAGTATAAGCCAGAAGATGCTTCGAAAAATTGGTATCCTCAAGTCCATTCCAAGCATCTCGGAAAGATCGTAAGTTTTCTAAATGAAAATTTTAGAGCCAAGTAATTTTTTTTGCAGATCGACAACAAGAAGAAACTCTCTGAAGACTGCAATGGACGCGAAATCAAAACTCAGCTCTGTAAGGTTG</canonical_amplicon>
		<polymorphic_amplicon>AACCTCTTCTGAAAGGAGAAATGGTTGCAAATCACGTTGTCCTGAGAACTTCAGTGGAGAAGTATAAGCCARAAGATGCTTCGAAAAATTGGTATCCTCAAGTCCATTCCAAGCATCTCGGAAAGATCGTAAGTTTTCTAAATGAAAATTTTAGAGCCAAGTAATTTTTTTTGCAGATCGACAACAAGAAGAAACTCTCTGAAGACTGCAATGGACGCGAAATCAAAACTCAGCTCTGTAAGGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21139</snp_id>
        <super_contig>c013101329.Contig1</super_contig>
        <contig_pos>130082</contig_pos>
        <strand></strand>
        <context>AAATGGTTGC[A/G]AATCACGTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGAAGTACATGAAACCTGCTGAACCTCTTCTGAAAGGAGAAATGGTTGC</left_flank>
        <right_flank>AATCACGTTGTCCTGAGAACTTCAGTGGAGAAGTATAAGCCAGAAGATGC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGTCTATGCGCCTTTAACTCTCGCGCGCCTCTTTCTCCGTTCTTCAACGAAAAACATAATATTCAATAGCATGAAGTACTGTGCTGACGTCAAGGAACCAATGAAGTCATTCTCATCTGATGTCATTGTTGGTACAGGATTTGCAATGAGCAACCTGAACATCAGCAAAAAGAAAAAGGTAGTAATGAAAGCTTTAGTTGAAGTTTCATTTTAAAAAATGAAAATGAACGTATTCGTCTACAGTTCGATTCCGAAAGGACAAAATACGACTTATTTTCTGTGGATTTGCGACAACCATCAGTTTGTCAATATTTAGAAAATGTCTGTTAATTCAAAGAATGTTTTAGAACATCCATATTCACTTCGAAAGCTCACACTCTTGCTCTGGGTCATTTTTTCGAAGGAATCTTCAAAGAAACACCAAACGAGAAGTCAAAATGGCAATGTGTGAAGTACATGAAACCTGCTGAACCTCTTCTGAAAGGAGAAATGGTTGCAAATCACGTTGTCCTGAGAACTTCAGTGGAGAAGTATAAGCCAGAAGATGCTTCGAAAAATTGGTATCCTCAAGTCCATTCCAAGCATCTCGGAAAGATCGTAAGTTTTCTAAATGAAAATTTTAGAGCCAAGTAATTTTTTTTGCAGATCGACAACAAGAAGAAACTCTCTGAAGACTGCAATGGACGCGAAATCAAAACTCAGCTCTGTAAGGTTGGAGATGATTACAGATGGGTTGTCATTGAACTTCTTTAAAAAATAAATATTTATTCATTCTAACTTTGGCTTACTATTCTTGAAACACTTAAGAATCGTTTTCACTAATTTCACAAAGATGCAAATTACTAGAACTAAAACTAGTATCAACAGAGTAATAATATCCAGAAAGTAGTAGACGAAAATATTTTGGTGTCTTCCATAGTTATCCATTGATGGAAGTTTCCCGAATCTGGCAGCAAATTCAACGTGTTTCACCAAAACTTCCTTCGCATTCGTCGGCA</canonical>
            <polymorphic>AAAGTCTATGCGCCTTTAACTCTCGCGCGCCTCTTTCTCCGTTCTTCAACGAAAAACATAATATTCAATAGCATGAAGTACTGTGCTGACGTCAAGGAACCAATGAAGTCATTCTCATCTGATGTCATTGTTGGTACAGGATTTGCAATGAGCAACCTGAACATCAGCAAAAAGAAAAAGGTAGTAATGAAAGCTTTAGTTGAAGTTTCATTTTAAAAAATGAAAATGAACGTATTCGTCTACAGTTCGATTCCGAAAGGACAAAATACGACTTATTTTCTGTGGATTTGCGACAACCATCAGTTTGTCAATATTTAGAAAATGTCTGTTAATTCAAAGAATGTTTTAGAACATCCATATTCACTTCGAAAGCTCACACTCTTGCTCTGGGTCATTTTTTCGAAGGAATCTTCAAAGAAACACCAAACGAGAAGTCAAAATGGCAATGTGTGAAGTACATGAAACCTGCTGAACCTCTTCTGAAAGGAGAAATGGTTGCRAATCACGTTGTCCTGAGAACTTCAGTGGAGAAGTATAAGCCAGAAGATGCTTCGAAAAATTGGTATCCTCAAGTCCATTCCAAGCATCTCGGAAAGATCGTAAGTTTTCTAAATGAAAATTTTAGAGCCAAGTAATTTTTTTTGCAGATCGACAACAAGAAGAAACTCTCTGAAGACTGCAATGGACGCGAAATCAAAACTCAGCTCTGTAAGGTTGGAGATGATTACAGATGGGTTGTCATTGAACTTCTTTAAAAAATAAATATTTATTCATTCTAACTTTGGCTTACTATTCTTGAAACACTTAAGAATCGTTTTCACTAATTTCACAAAGATGCAAATTACTAGAACTAAAACTAGTATCAACAGAGTAATAATATCCAGAAAGTAGTAGACGAAAATATTTTGGTGTCTTCCATAGTTATCCATTGATGGAAGTTTCCCGAATCTGGCAGCAAATTCAACGTGTTTCACCAAAACTTCCTTCGCATTCGTCGGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>353 163 158 146 145 35</canonical_bands>
                <polymorphic_bands>499 163 158 145 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAAGTCAAAATGGCAATG</pcr_primer_p1>
		<pcr_primer_p2>CTTCAGAGAGTTTCTTCTTGTTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAGAAGTCAAAATGGCAATGTGTGAAGTACATGAAACCTGCTGAACCTCTTCTGAAAGGAGAAATGGTTGCAAATCACGTTGTCCTGAGAACTTCAGTGGAGAAGTATAAGCCAGAAGATGCTTCGAAAAATTGGTATCCTCAAGTCCATTCCAAGCATCTCGGAAAGATCGTAAGTTTTCTAAATGAAAATTTTAGAGCCAAGTAATTTTTTTTGCAGATCGACAACAAGAAGAAACTCTCTGAAG</canonical_amplicon>
		<polymorphic_amplicon>GAGAAGTCAAAATGGCAATGTGTGAAGTACATGAAACCTGCTGAACCTCTTCTGAAAGGAGAAATGGTTGCRAATCACGTTGTCCTGAGAACTTCAGTGGAGAAGTATAAGCCAGAAGATGCTTCGAAAAATTGGTATCCTCAAGTCCATTCCAAGCATCTCGGAAAGATCGTAAGTTTTCTAAATGAAAATTTTAGAGCCAAGTAATTTTTTTTGCAGATCGACAACAAGAAGAAACTCTCTGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21140</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>6641</contig_pos>
        <strand></strand>
        <context>AGGACGGAGG[A/G]GCgtgtgtgt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGAAAATGCATGCATTTCCTCCCTTTCTCATATGTGTAAAGGACGGAGG</left_flank>
        <right_flank>GCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGAGCGAAGAATGGC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAAACTTTTATTTTTCTGTCAGACTGCTCTGAGAAAAATTGTTTTGAAGTTTTTTTTTTCATTCTCTTTCAGTTATTTTCTCATGAATATCATTTTGGCCATTTATAGTCCTCGATCTCCTTTCAAGTTTTCAGATCCTTCAGAATCATTGACCACTTTCTTGTAAAGAATCAATTCGAAGTTCACCTTGAGATTTGTCTTCCACATTTCCTCGAGACCTAAATAACCCATTTCCTTCCATCTGACCAGTTTTTATTATTCTTCTGATCAACACATTTTGCGTCAATGAATATAATACACGTGAGCATTCCCTTTATTCTCCTCCGACGCTGCTCTAATTTCCAATCCGATTTCTTGTCCTCGTTCTCCTCCAAAGTAATAACAGCTAAGCTTTGCCGACAGGAATAGAGACTGAGAGAGAAAAGACAGCAAAATTCTCATTTCTCCAGAGAAAATGCATGCATTTCCTCCCTTTCTCATATGTGTAAAGGACGGAGGAGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGAGCGAAGAATGGCCAAAATCCAGTTTCATTCCGCTATCAATCGACGCGGTGCGGGGGGAGGCGGCAATGTCTTTTTGCCCTCGCCCATATCGTTTTCGTTCGGTTTTCACGTGTTTTCCGCAGAATTCTCGTTACTATTTGGTCTGCTGACGTGACTTGCATTCAAACTTTTCGATTCGTCCATTTTCTTTAATGGTTCTTGCCTTGTCTTCGTTGAGATTCCATTTATAAGGACGATTGACAAGAAGGAAGGTAGCTTCATTTTGTCTCCTTCTTCTTTTTTATCCCAATTTCCTCATTTCTAGTAACTTTGTTTTGTTTTTCATGTAAGAGTTTATATTATTTCTATGGTGTTCCCATGCAGTATCATCCTTGAACCTTTTTTTCTGTTATTTTGCCATGAACCCATTCGTTTTCATATAGTTTCCAATAATCATAATTTCAGAGCACTTCTCCTTCATCT</canonical>
            <polymorphic>GCAAACTTTTATTTTTCTGTCAGACTGCTCTGAGAAAAATTGTTTTGAAGTTTTTTTTTTCATTCTCTTTCAGTTATTTTCTCATGAATATCATTTTGGCCATTTATAGTCCTCGATCTCCTTTCAAGTTTTCAGATCCTTCAGAATCATTGACCACTTTCTTGTAAAGAATCAATTCGAAGTTCACCTTGAGATTTGTCTTCCACATTTCCTCGAGACCTAAATAACCCATTTCCTTCCATCTGACCAGTTTTTATTATTCTTCTGATCAACACATTTTGCGTCAATGAATATAATACACGTGAGCATTCCCTTTATTCTCCTCCGACGCTGCTCTAATTTCCAATCCGATTTCTTGTCCTCGTTCTCCTCCAAAGTAATAACAGCTAAGCTTTGCCGACAGGAATAGAGACTGAGAGAGAAAAGACAGCAAAATTCTCATTTCTCCAGAGAAAATGCATGCATTTCCTCCCTTTCTCATATGTGTAAAGGACGGAGGRGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGAGCGAAGAATGGCCAAAATCCAGTTTCATTCCGCTATCAATCGACGCGGTGCGGGGGGAGGCGGCAATGTCTTTTTGCCCTCGCCCATATCGTTTTCGTTCGGTTTTCACGTGTTTTCCGCAGAATTCTCGTTACTATTTGGTCTGCTGACGTGACTTGCATTCAAACTTTTCGATTCGTCCATTTTCTTTAATGGTTCTTGCCTTGTCTTCGTTGAGATTCCATTTATAAGGACGATTGACAAGAAGGAAGGTAGCTTCATTTTGTCTCCTTCTTCTTTTTTATCCCAATTTCCTCATTTCTAGTAACTTTGTTTTGTTTTTCATGTAAGAGTTTATATTATTTCTATGGTGTTCCCATGCAGTATCATCCTTGAACCTTTTTTTCTGTTATTTTGCCATGAACCCATTCGTTTTCATATAGTTTCCAATAATCATAATTTCAGAGCACTTCTCCTTCATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAGCAAAATTCTCATTTCTC</pcr_primer_p1>
		<pcr_primer_p2>TCAGCAGACCAAATAGTAACG</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>GACAGCAAAATTCTCATTTCTCCAGAGAAAATGCATGCATTTCCTCCCTTTCTCATATGTGTAAAGGACGGAGGAGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGAGCGAAGAATGGCCAAAATCCAGTTTCATTCCGCTATCAATCGACGCGGTGCGGGGGGAGGCGGCAATGTCTTTTTGCCCTCGCCCATATCGTTTTCGTTCGGTTTTCACGTGTTTTCCGCAGAATTCTCGTTACTATTTGGTCTGCTGA</canonical_amplicon>
		<polymorphic_amplicon>GACAGCAAAATTCTCATTTCTCCAGAGAAAATGCATGCATTTCCTCCCTTTCTCATATGTGTAAAGGACGGAGGRGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGAGCGAAGAATGGCCAAAATCCAGTTTCATTCCGCTATCAATCGACGCGGTGCGGGGGGAGGCGGCAATGTCTTTTTGCCCTCGCCCATATCGTTTTCGTTCGGTTTTCACGTGTTTTCCGCAGAATTCTCGTTACTATTTGGTCTGCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21164</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>63890</contig_pos>
        <strand>+</strand>
        <context>GATGGCGAGT[C/T]TTCTATTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGAATCGAGGCTCGAGTTACAATGGTAAGATGTGCGCAAGATGGCGAGT</left_flank>
        <right_flank>TTCTATTCAATTTCTTCTTGCACAGCTCGGTTAATGACGTCTCATTCTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATTTTAAATTTCTCAATTTCCGAAAATAGACTTCACGCTAGTACTAATCTATACTATCTAGGCTCTTTTTTTACATTATTTTTTTGTTCGAAAAACGAGCAACTAGAAAATCACTGCATTAGAAATCCACACCAATTGAAACCTTTTCTATGAGAATTTCAAATTAAAAGAAGATCTATTTTAAGACGAATTAACATTAGACTTTAGCGGAAAAAATCACTGTTCCATGCCATCCGTTCTTTTGTGGTTTTCTTTTCGGTTTCATTTTCACTGGCGTGAAACTAATTGGGAGGAATGAGTAGAAAGAAGAAGTGAAAATTTTTTGTTCGGTGATTTTCTTGGAGAGTGAGAGTAGAGTAGCAACGGAAAAAAAGGAATTAGAAACTGAGAAACCAAGAGACACGCGTTGTGACAATTGACAGATTGCATATGACAGAAGGGTGGTAGGAATCGAGGCTCGAGTTACAATGGTAAGATGTGCGCAAGATGGCGAGTTTTCTATTCAATTTCTTCTTGCACAGCTCGGTTAATGACGTCTCATTCTCTTGTTTCCTTCCGTTTCCAAAGAAACTGCATCGAGAGGAGAGGTTCAAGAACATAAGAAGGAGGAGGATGAGCCACTATTACTAAATCCGCTTTTTAGTCCGAAAATACAGTGATTATTTTTATGGAAAATTTTCCAGGTAGGAAATTTTCCAGGTAGTGAGCGAAATAAAATAAAAAATATTGCTTGGAGAAGGCAATTGTGTTCCCGCCAAGTACTTCCCCTATTCAATTCAAACAGAGTGTGAAAAATTCTGAATCATTCTCACGATAACCGGCACTAGCACAAACACAACTCTCCACACCTATTTCGTCACTGATATGATTAGCGTTTGTTCTACAGTATTTTAAAAGTATTCCAAGGAAAAAAAGAGAAAAAACGAAATCCGTTACGCTGGACACAAAACTGACTGACCTCTTCCTTCGTTTCTCTTATCTCAAAAAAAAAAGATT</canonical>
            <polymorphic>AAAAATTTTAAATTTCTCAATTTCCGAAAATAGACTTCACGCTAGTACTAATCTATACTATCTAGGCTCTTTTTTTACATTATTTTTTTGTTCGAAAAACGAGCAACTAGAAAATCACTGCATTAGAAATCCACACCAATTGAAACCTTTTCTATGAGAATTTCAAATTAAAAGAAGATCTATTTTAAGACGAATTAACATTAGACTTTAGCGGAAAAAATCACTGTTCCATGCCATCCGTTCTTTTGTGGTTTTCTTTTCGGTTTCATTTTCACTGGCGTGAAACTAATTGGGAGGAATGAGTAGAAAGAAGAAGTGAAAATTTTTTGTTCGGTGATTTTCTTGGAGAGTGAGAGTAGAGTAGCAACGGAAAAAAAGGAATTAGAAACTGAGAAACCAAGAGACACGCGTTGTGACAATTGACAGATTGCATATGACAGAAGGGTGGTAGGAATCGAGGCTCGAGTTACAATGGTAAGATGTGCGCAAGATGGCGAGTYTTCTATTCAATTTCTTCTTGCACAGCTCGGTTAATGACGTCTCATTCTCTTGTTTCCTTCCGTTTCCAAAGAAACTGCATCGAGAGGAGAGGTTCAAGAACATAAGAAGGAGGAGGATGAGCCACTATTACTAAATCCGCTTTTTAGTCCGAAAATACAGTGATTATTTTTATGGAAAATTTTCCAGGTAGGAAATTTTCCAGGTAGTGAGCGAAATAAAATAAAAAATATTGCTTGGAGAAGGCAATTGTGTTCCCGCCAAGTACTTCCCCTATTCAATTCAAACAGAGTGTGAAAAATTCTGAATCATTCTCACGATAACCGGCACTAGCACAAACACAACTCTCCACACCTATTTCGTCACTGATATGATTAGCGTTTGTTCTACAGTATTTTAAAAGTATTCCAAGGAAAAAAAGAGAAAAAACGAAATCCGTTACGCTGGACACAAAACTGACTGACCTCTTCCTTCGTTTCTCTTATCTCAAAAAAAAAAGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTGAGAAACCAAGAGACAC</pcr_primer_p1>
		<pcr_primer_p2>TTTAGTAATAGTGGCTCATCCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACTGAGAAACCAAGAGACACGCGTTGTGACAATTGACAGATTGCATATGACAGAAGGGTGGTAGGAATCGAGGCTCGAGTTACAATGGTAAGATGTGCGCAAGATGGCGAGTTTTCTATTCAATTTCTTCTTGCACAGCTCGGTTAATGACGTCTCATTCTCTTGTTTCCTTCCGTTTCCAAAGAAACTGCATCGAGAGGAGAGGTTCAAGAACATAAGAAGGAGGAGGATGAGCCACTATTACTAAA</canonical_amplicon>
		<polymorphic_amplicon>AAACTGAGAAACCAAGAGACACGCGTTGTGACAATTGACAGATTGCATATGACAGAAGGGTGGTAGGAATCGAGGCTCGAGTTACAATGGTAAGATGTGCGCAAGATGGCGAGTYTTCTATTCAATTTCTTCTTGCACAGCTCGGTTAATGACGTCTCATTCTCTTGTTTCCTTCCGTTTCCAAAGAAACTGCATCGAGAGGAGAGGTTCAAGAACATAAGAAGGAGGAGGATGAGCCACTATTACTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21165</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>66499</contig_pos>
        <strand></strand>
        <context>CTAGTTCTAA[A/T]AAATAGAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAAAAAAACTCCAGCACGTTTTTTGTCTAGACTTCACGCTAGTTCTAA</left_flank>
        <right_flank>AAATAGAAAGTGAGGTATAAGCAATTTGTTGAAGTGCTGGTAATACTTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTATATTAAAAATTGGGAAAAAAGGTACAGGTTTGCCTAATGATGCTCAAAAATTATTTTTAAAAATTAATCTGAAATCTTGTGATCTGTTGTAACTAATACAGCTAAAAACTAAATCCTAAGGGAAAATCACAAAATATAAGTCCCAGTACACCGAATTTGATTTGAATCATACCGTATTTCCTCTACTAGAAGAACCCGAAATGTTGAGCACAATTATCTCGATATCTGTGAAAGGTAACAAATTTTTGTCAATTGATAAAATATTGGTGATATTAAGATAAATAATTTATCAGTTGACGAATTTTTGATATCATTTACAACAATCGAGATATTTGGGCCTAAAGTTGACAATTTAAGTGGGTTTCTATTTTTAGTGAATACGGCATTTCAGATAATATGGATTTCACATTTTTTAAACTAAAAAAAATCATAAATTGGTAAATTTGAAAAAAAAACTCCAGCACGTTTTTTGTCTAGACTTCACGCTAGTTCTAAAAAATAGAAAGTGAGGTATAAGCAATTTGTTGAAGTGCTGGTAATACTTTCTTGCTGCTAATATGTTGACAAAGTTCTTGAAAAAATCCTCCTCGAACAGACCAGGGAACAAAACGATTGACAATTTTCATTTTCAAAAAATTGGTAATTGAACCTGTTACCTAGAGGAAGTGAAAAAAATGTTGGTTCGATTTGAATTCTCTATTCAATGCAAAAAAAATAACACAACAATACCTAGTAACTGGTTAGACCAAAGGTAAAAAGGCACACTTTTGAATGGCAAAGAGAAAAATAGAGAAAGAGGTATATTCCAACATCAAGATAAAAGGAAAAGTCTATTCCGGGTCAGTCGAGTGTGAAAATGGCGACTAATTTAAGTTAGTTGAACCCCTTACAGCACTTTCACTAACTTGGAATCAAAGAAAAATCAAGGAAATCTAAATAAAAAAGTTCTAACCCACCTCTCTAAAAGGCTCATGTCTCCCGTGTCACACCGATGTA</canonical>
            <polymorphic>GGTATATTAAAAATTGGGAAAAAAGGTACAGGTTTGCCTAATGATGCTCAAAAATTATTTTTAAAAATTAATCTGAAATCTTGTGATCTGTTGTAACTAATACAGCTAAAAACTAAATCCTAAGGGAAAATCACAAAATATAAGTCCCAGTACACCGAATTTGATTTGAATCATACCGTATTTCCTCTACTAGAAGAACCCGAAATGTTGAGCACAATTATCTCGATATCTGTGAAAGGTAACAAATTTTTGTCAATTGATAAAATATTGGTGATATTAAGATAAATAATTTATCAGTTGACGAATTTTTGATATCATTTACAACAATCGAGATATTTGGGCCTAAAGTTGACAATTTAAGTGGGTTTCTATTTTTAGTGAATACGGCATTTCAGATAATATGGATTTCACATTTTTTAAACTAAAAAAAATCATAAATTGGTAAATTTGAAAAAAAAACTCCAGCACGTTTTTTGTCTAGACTTCACGCTAGTTCTAAWAAATAGAAAGTGAGGTATAAGCAATTTGTTGAAGTGCTGGTAATACTTTCTTGCTGCTAATATGTTGACAAAGTTCTTGAAAAAATCCTCCTCGAACAGACCAGGGAACAAAACGATTGACAATTTTCATTTTCAAAAAATTGGTAATTGAACCTGTTACCTAGAGGAAGTGAAAAAAATGTTGGTTCGATTTGAATTCTCTATTCAATGCAAAAAAAATAACACAACAATACCTAGTAACTGGTTAGACCAAAGGTAAAAAGGCACACTTTTGAATGGCAAAGAGAAAAATAGAGAAAGAGGTATATTCCAACATCAAGATAAAAGGAAAAGTCTATTCCGGGTCAGTCGAGTGTGAAAATGGCGACTAATTTAAGTTAGTTGAACCCCTTACAGCACTTTCACTAACTTGGAATCAAAGAAAAATCAAGGAAATCTAAATAAAAAAGTTCTAACCCACCTCTCTAAAAGGCTCATGTCTCCCGTGTCACACCGATGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGAATACGGCATTTCAGATA</pcr_primer_p1>
		<pcr_primer_p2>AAAATTGTCAATCGTTTTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGAATACGGCATTTCAGATAATATGGATTTCACATTTTTTAAACTAAAAAAAATCATAAATTGGTAAATTTGAAAAAAAAACTCCAGCACGTTTTTTGTCTAGACTTCACGCTAGTTCTAAAAAATAGAAAGTGAGGTATAAGCAATTTGTTGAAGTGCTGGTAATACTTTCTTGCTGCTAATATGTTGACAAAGTTCTTGAAAAAATCCTCCTCGAACAGACCAGGGAACAAAACGATTGACAATTTT</canonical_amplicon>
		<polymorphic_amplicon>GTGAATACGGCATTTCAGATAATATGGATTTCACATTTTTTAAACTAAAAAAAATCATAAATTGGTAAATTTGAAAAAAAAACTCCAGCACGTTTTTTGTCTAGACTTCACGCTAGTTCTAAWAAATAGAAAGTGAGGTATAAGCAATTTGTTGAAGTGCTGGTAATACTTTCTTGCTGCTAATATGTTGACAAAGTTCTTGAAAAAATCCTCCTCGAACAGACCAGGGAACAAAACGATTGACAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21166</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>66628</contig_pos>
        <strand></strand>
        <context>GACAATTTTC[A/T]TTTTCAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAAAATCCTCCTCGAACAGACCAGGGAACAAAACGATTGACAATTTTC</left_flank>
        <right_flank>TTTTCAAAAAATTGGTAATTGAACCTGTTACCTAGAGGAAGTGAAAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCACAAAATATAAGTCCCAGTACACCGAATTTGATTTGAATCATACCGTATTTCCTCTACTAGAAGAACCCGAAATGTTGAGCACAATTATCTCGATATCTGTGAAAGGTAACAAATTTTTGTCAATTGATAAAATATTGGTGATATTAAGATAAATAATTTATCAGTTGACGAATTTTTGATATCATTTACAACAATCGAGATATTTGGGCCTAAAGTTGACAATTTAAGTGGGTTTCTATTTTTAGTGAATACGGCATTTCAGATAATATGGATTTCACATTTTTTAAACTAAAAAAAATCATAAATTGGTAAATTTGAAAAAAAAACTCCAGCACGTTTTTTGTCTAGACTTCACGCTAGTTCTAAAAAATAGAAAGTGAGGTATAAGCAATTTGTTGAAGTGCTGGTAATACTTTCTTGCTGCTAATATGTTGACAAAGTTCTTGAAAAAATCCTCCTCGAACAGACCAGGGAACAAAACGATTGACAATTTTCATTTTCAAAAAATTGGTAATTGAACCTGTTACCTAGAGGAAGTGAAAAAAATGTTGGTTCGATTTGAATTCTCTATTCAATGCAAAAAAAATAACACAACAATACCTAGTAACTGGTTAGACCAAAGGTAAAAAGGCACACTTTTGAATGGCAAAGAGAAAAATAGAGAAAGAGGTATATTCCAACATCAAGATAAAAGGAAAAGTCTATTCCGGGTCAGTCGAGTGTGAAAATGGCGACTAATTTAAGTTAGTTGAACCCCTTACAGCACTTTCACTAACTTGGAATCAAAGAAAAATCAAGGAAATCTAAATAAAAAAGTTCTAACCCACCTCTCTAAAAGGCTCATGTCTCCCGTGTCACACCGATGTAGTTTTCTTGCGTGCAGTCCACCGCCGGTCCTCAGGTGAACAGCAGCGGATGAGGATGGTTGTTGGGTAGTGGCCGAGAGGCGGCCGCTCATCATGTCGAGATCCTTGAACGACACTCGTTTCTCGGCTT</canonical>
            <polymorphic>ATCACAAAATATAAGTCCCAGTACACCGAATTTGATTTGAATCATACCGTATTTCCTCTACTAGAAGAACCCGAAATGTTGAGCACAATTATCTCGATATCTGTGAAAGGTAACAAATTTTTGTCAATTGATAAAATATTGGTGATATTAAGATAAATAATTTATCAGTTGACGAATTTTTGATATCATTTACAACAATCGAGATATTTGGGCCTAAAGTTGACAATTTAAGTGGGTTTCTATTTTTAGTGAATACGGCATTTCAGATAATATGGATTTCACATTTTTTAAACTAAAAAAAATCATAAATTGGTAAATTTGAAAAAAAAACTCCAGCACGTTTTTTGTCTAGACTTCACGCTAGTTCTAAAAAATAGAAAGTGAGGTATAAGCAATTTGTTGAAGTGCTGGTAATACTTTCTTGCTGCTAATATGTTGACAAAGTTCTTGAAAAAATCCTCCTCGAACAGACCAGGGAACAAAACGATTGACAATTTTCWTTTTCAAAAAATTGGTAATTGAACCTGTTACCTAGAGGAAGTGAAAAAAATGTTGGTTCGATTTGAATTCTCTATTCAATGCAAAAAAAATAACACAACAATACCTAGTAACTGGTTAGACCAAAGGTAAAAAGGCACACTTTTGAATGGCAAAGAGAAAAATAGAGAAAGAGGTATATTCCAACATCAAGATAAAAGGAAAAGTCTATTCCGGGTCAGTCGAGTGTGAAAATGGCGACTAATTTAAGTTAGTTGAACCCCTTACAGCACTTTCACTAACTTGGAATCAAAGAAAAATCAAGGAAATCTAAATAAAAAAGTTCTAACCCACCTCTCTAAAAGGCTCATGTCTCCCGTGTCACACCGATGTAGTTTTCTTGCGTGCAGTCCACCGCCGGTCCTCAGGTGAACAGCAGCGGATGAGGATGGTTGTTGGGTAGTGGCCGAGAGGCGGCCGCTCATCATGTCGAGATCCTTGAACGACACTCGTTTCTCGGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGTATAAGCAATTTGTTGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTACCTTTGGTCTAACCAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGGTATAAGCAATTTGTTGAAGTGCTGGTAATACTTTCTTGCTGCTAATATGTTGACAAAGTTCTTGAAAAAATCCTCCTCGAACAGACCAGGGAACAAAACGATTGACAATTTTCATTTTCAAAAAATTGGTAATTGAACCTGTTACCTAGAGGAAGTGAAAAAAATGTTGGTTCGATTTGAATTCTCTATTCAATGCAAAAAAAATAACACAACAATACCTAGTAACTGGTTAGACCAAAGGTAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAGGTATAAGCAATTTGTTGAAGTGCTGGTAATACTTTCTTGCTGCTAATATGTTGACAAAGTTCTTGAAAAAATCCTCCTCGAACAGACCAGGGAACAAAACGATTGACAATTTTCWTTTTCAAAAAATTGGTAATTGAACCTGTTACCTAGAGGAAGTGAAAAAAATGTTGGTTCGATTTGAATTCTCTATTCAATGCAAAAAAAATAACACAACAATACCTAGTAACTGGTTAGACCAAAGGTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21167</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>66669</contig_pos>
        <strand></strand>
        <context>CCTAGAGGAA[G/A]TGAAAAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACAATTTTCATTTTCAAAAAATTGGTAATTGAACCTGTTACCTAGAGGAA</left_flank>
        <right_flank>TGAAAAAAATGTTGGTTCGATTTGAATTCTCTATTCAATGCAAAAAAAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATACCGTATTTCCTCTACTAGAAGAACCCGAAATGTTGAGCACAATTATCTCGATATCTGTGAAAGGTAACAAATTTTTGTCAATTGATAAAATATTGGTGATATTAAGATAAATAATTTATCAGTTGACGAATTTTTGATATCATTTACAACAATCGAGATATTTGGGCCTAAAGTTGACAATTTAAGTGGGTTTCTATTTTTAGTGAATACGGCATTTCAGATAATATGGATTTCACATTTTTTAAACTAAAAAAAATCATAAATTGGTAAATTTGAAAAAAAAACTCCAGCACGTTTTTTGTCTAGACTTCACGCTAGTTCTAAAAAATAGAAAGTGAGGTATAAGCAATTTGTTGAAGTGCTGGTAATACTTTCTTGCTGCTAATATGTTGACAAAGTTCTTGAAAAAATCCTCCTCGAACAGACCAGGGAACAAAACGATTGACAATTTTCATTTTCAAAAAATTGGTAATTGAACCTGTTACCTAGAGGAAGTGAAAAAAATGTTGGTTCGATTTGAATTCTCTATTCAATGCAAAAAAAATAACACAACAATACCTAGTAACTGGTTAGACCAAAGGTAAAAAGGCACACTTTTGAATGGCAAAGAGAAAAATAGAGAAAGAGGTATATTCCAACATCAAGATAAAAGGAAAAGTCTATTCCGGGTCAGTCGAGTGTGAAAATGGCGACTAATTTAAGTTAGTTGAACCCCTTACAGCACTTTCACTAACTTGGAATCAAAGAAAAATCAAGGAAATCTAAATAAAAAAGTTCTAACCCACCTCTCTAAAAGGCTCATGTCTCCCGTGTCACACCGATGTAGTTTTCTTGCGTGCAGTCCACCGCCGGTCCTCAGGTGAACAGCAGCGGATGAGGATGGTTGTTGGGTAGTGGCCGAGAGGCGGCCGCTCATCATGTCGAGATCCTTGAACGACACTCGTTTCTCGGCTTTTGATAGTTGCTCAGCGGCCAGCGCCTGCGTGTTCACGTAC</canonical>
            <polymorphic>TCATACCGTATTTCCTCTACTAGAAGAACCCGAAATGTTGAGCACAATTATCTCGATATCTGTGAAAGGTAACAAATTTTTGTCAATTGATAAAATATTGGTGATATTAAGATAAATAATTTATCAGTTGACGAATTTTTGATATCATTTACAACAATCGAGATATTTGGGCCTAAAGTTGACAATTTAAGTGGGTTTCTATTTTTAGTGAATACGGCATTTCAGATAATATGGATTTCACATTTTTTAAACTAAAAAAAATCATAAATTGGTAAATTTGAAAAAAAAACTCCAGCACGTTTTTTGTCTAGACTTCACGCTAGTTCTAAAAAATAGAAAGTGAGGTATAAGCAATTTGTTGAAGTGCTGGTAATACTTTCTTGCTGCTAATATGTTGACAAAGTTCTTGAAAAAATCCTCCTCGAACAGACCAGGGAACAAAACGATTGACAATTTTCATTTTCAAAAAATTGGTAATTGAACCTGTTACCTAGAGGAARTGAAAAAAATGTTGGTTCGATTTGAATTCTCTATTCAATGCAAAAAAAATAACACAACAATACCTAGTAACTGGTTAGACCAAAGGTAAAAAGGCACACTTTTGAATGGCAAAGAGAAAAATAGAGAAAGAGGTATATTCCAACATCAAGATAAAAGGAAAAGTCTATTCCGGGTCAGTCGAGTGTGAAAATGGCGACTAATTTAAGTTAGTTGAACCCCTTACAGCACTTTCACTAACTTGGAATCAAAGAAAAATCAAGGAAATCTAAATAAAAAAGTTCTAACCCACCTCTCTAAAAGGCTCATGTCTCCCGTGTCACACCGATGTAGTTTTCTTGCGTGCAGTCCACCGCCGGTCCTCAGGTGAACAGCAGCGGATGAGGATGGTTGTTGGGTAGTGGCCGAGAGGCGGCCGCTCATCATGTCGAGATCCTTGAACGACACTCGTTTCTCGGCTTTTGATAGTTGCTCAGCGGCCAGCGCCTGCGTGTTCACGTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>136 90 87 57 55 52 47 44 43 42 41 39 34 30 28 25 24 21 20 20 17 17 7 6 5 4 3 2 2 2</canonical_bands>
                <polymorphic_bands>188 90 87 57 55 47 44 43 42 41 39 34 30 28 25 24 21 20 20 17 17 7 6 5 4 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGTATAAGCAATTTGTTGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTACCTTTGGTCTAACCAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGGTATAAGCAATTTGTTGAAGTGCTGGTAATACTTTCTTGCTGCTAATATGTTGACAAAGTTCTTGAAAAAATCCTCCTCGAACAGACCAGGGAACAAAACGATTGACAATTTTCATTTTCAAAAAATTGGTAATTGAACCTGTTACCTAGAGGAAGTGAAAAAAATGTTGGTTCGATTTGAATTCTCTATTCAATGCAAAAAAAATAACACAACAATACCTAGTAACTGGTTAGACCAAAGGTAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAGGTATAAGCAATTTGTTGAAGTGCTGGTAATACTTTCTTGCTGCTAATATGTTGACAAAGTTCTTGAAAAAATCCTCCTCGAACAGACCAGGGAACAAAACGATTGACAATTTTCATTTTCAAAAAATTGGTAATTGAACCTGTTACCTAGAGGAARTGAAAAAAATGTTGGTTCGATTTGAATTCTCTATTCAATGCAAAAAAAATAACACAACAATACCTAGTAACTGGTTAGACCAAAGGTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21168</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>66728</contig_pos>
        <strand></strand>
        <context>ATAACACAAC[A/G]ATACCTAGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGTTGGTTCGATTTGAATTCTCTATTCAATGCAAAAAAAATAACACAAC</left_flank>
        <right_flank>ATACCTAGTAACTGGTTAGACCAAAGGTAAAAAGGCACACTTTTGAATGG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTGAAAGGTAACAAATTTTTGTCAATTGATAAAATATTGGTGATATTAAGATAAATAATTTATCAGTTGACGAATTTTTGATATCATTTACAACAATCGAGATATTTGGGCCTAAAGTTGACAATTTAAGTGGGTTTCTATTTTTAGTGAATACGGCATTTCAGATAATATGGATTTCACATTTTTTAAACTAAAAAAAATCATAAATTGGTAAATTTGAAAAAAAAACTCCAGCACGTTTTTTGTCTAGACTTCACGCTAGTTCTAAAAAATAGAAAGTGAGGTATAAGCAATTTGTTGAAGTGCTGGTAATACTTTCTTGCTGCTAATATGTTGACAAAGTTCTTGAAAAAATCCTCCTCGAACAGACCAGGGAACAAAACGATTGACAATTTTCATTTTCAAAAAATTGGTAATTGAACCTGTTACCTAGAGGAAGTGAAAAAAATGTTGGTTCGATTTGAATTCTCTATTCAATGCAAAAAAAATAACACAACAATACCTAGTAACTGGTTAGACCAAAGGTAAAAAGGCACACTTTTGAATGGCAAAGAGAAAAATAGAGAAAGAGGTATATTCCAACATCAAGATAAAAGGAAAAGTCTATTCCGGGTCAGTCGAGTGTGAAAATGGCGACTAATTTAAGTTAGTTGAACCCCTTACAGCACTTTCACTAACTTGGAATCAAAGAAAAATCAAGGAAATCTAAATAAAAAAGTTCTAACCCACCTCTCTAAAAGGCTCATGTCTCCCGTGTCACACCGATGTAGTTTTCTTGCGTGCAGTCCACCGCCGGTCCTCAGGTGAACAGCAGCGGATGAGGATGGTTGTTGGGTAGTGGCCGAGAGGCGGCCGCTCATCATGTCGAGATCCTTGAACGACACTCGTTTCTCGGCTTTTGATAGTTGCTCAGCGGCCAGCGCCTGCGTGTTCACGTACAGCGGTATCGATGACGTGGCACTTCCACCAGAGTAGGTGTTGGGAACTCTGTGGCTTTG</canonical>
            <polymorphic>CTGTGAAAGGTAACAAATTTTTGTCAATTGATAAAATATTGGTGATATTAAGATAAATAATTTATCAGTTGACGAATTTTTGATATCATTTACAACAATCGAGATATTTGGGCCTAAAGTTGACAATTTAAGTGGGTTTCTATTTTTAGTGAATACGGCATTTCAGATAATATGGATTTCACATTTTTTAAACTAAAAAAAATCATAAATTGGTAAATTTGAAAAAAAAACTCCAGCACGTTTTTTGTCTAGACTTCACGCTAGTTCTAAAAAATAGAAAGTGAGGTATAAGCAATTTGTTGAAGTGCTGGTAATACTTTCTTGCTGCTAATATGTTGACAAAGTTCTTGAAAAAATCCTCCTCGAACAGACCAGGGAACAAAACGATTGACAATTTTCATTTTCAAAAAATTGGTAATTGAACCTGTTACCTAGAGGAAGTGAAAAAAATGTTGGTTCGATTTGAATTCTCTATTCAATGCAAAAAAAATAACACAACRATACCTAGTAACTGGTTAGACCAAAGGTAAAAAGGCACACTTTTGAATGGCAAAGAGAAAAATAGAGAAAGAGGTATATTCCAACATCAAGATAAAAGGAAAAGTCTATTCCGGGTCAGTCGAGTGTGAAAATGGCGACTAATTTAAGTTAGTTGAACCCCTTACAGCACTTTCACTAACTTGGAATCAAAGAAAAATCAAGGAAATCTAAATAAAAAAGTTCTAACCCACCTCTCTAAAAGGCTCATGTCTCCCGTGTCACACCGATGTAGTTTTCTTGCGTGCAGTCCACCGCCGGTCCTCAGGTGAACAGCAGCGGATGAGGATGGTTGTTGGGTAGTGGCCGAGAGGCGGCCGCTCATCATGTCGAGATCCTTGAACGACACTCGTTTCTCGGCTTTTGATAGTTGCTCAGCGGCCAGCGCCTGCGTGTTCACGTACAGCGGTATCGATGACGTGGCACTTCCACCAGAGTAGGTGTTGGGAACTCTGTGGCTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTGGTAATTGAACCTGTTA</pcr_primer_p1>
		<pcr_primer_p2>AACTTAAATTAGTCGCCATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAAATTGGTAATTGAACCTGTTACCTAGAGGAAGTGAAAAAAATGTTGGTTCGATTTGAATTCTCTATTCAATGCAAAAAAAATAACACAACAATACCTAGTAACTGGTTAGACCAAAGGTAAAAAGGCACACTTTTGAATGGCAAAGAGAAAAATAGAGAAAGAGGTATATTCCAACATCAAGATAAAAGGAAAAGTCTATTCCGGGTCAGTCGAGTGTGAAAATGGCGACTAATTTAAGTT</canonical_amplicon>
		<polymorphic_amplicon>AAAATTGGTAATTGAACCTGTTACCTAGAGGAAGTGAAAAAAATGTTGGTTCGATTTGAATTCTCTATTCAATGCAAAAAAAATAACACAACRATACCTAGTAACTGGTTAGACCAAAGGTAAAAAGGCACACTTTTGAATGGCAAAGAGAAAAATAGAGAAAGAGGTATATTCCAACATCAAGATAAAAGGAAAAGTCTATTCCGGGTCAGTCGAGTGTGAAAATGGCGACTAATTTAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21169</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>66761</contig_pos>
        <strand></strand>
        <context>AAAGGTAAAA[A/C]GGCACACTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAAAAAATAACACAACAATACCTAGTAACTGGTTAGACCAAAGGTAAAA</left_flank>
        <right_flank>GGCACACTTTTGAATGGCAAAGAGAAAAATAGAGAAAGAGGTATATTCCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATATTGGTGATATTAAGATAAATAATTTATCAGTTGACGAATTTTTGATATCATTTACAACAATCGAGATATTTGGGCCTAAAGTTGACAATTTAAGTGGGTTTCTATTTTTAGTGAATACGGCATTTCAGATAATATGGATTTCACATTTTTTAAACTAAAAAAAATCATAAATTGGTAAATTTGAAAAAAAAACTCCAGCACGTTTTTTGTCTAGACTTCACGCTAGTTCTAAAAAATAGAAAGTGAGGTATAAGCAATTTGTTGAAGTGCTGGTAATACTTTCTTGCTGCTAATATGTTGACAAAGTTCTTGAAAAAATCCTCCTCGAACAGACCAGGGAACAAAACGATTGACAATTTTCATTTTCAAAAAATTGGTAATTGAACCTGTTACCTAGAGGAAGTGAAAAAAATGTTGGTTCGATTTGAATTCTCTATTCAATGCAAAAAAAATAACACAACAATACCTAGTAACTGGTTAGACCAAAGGTAAAAAGGCACACTTTTGAATGGCAAAGAGAAAAATAGAGAAAGAGGTATATTCCAACATCAAGATAAAAGGAAAAGTCTATTCCGGGTCAGTCGAGTGTGAAAATGGCGACTAATTTAAGTTAGTTGAACCCCTTACAGCACTTTCACTAACTTGGAATCAAAGAAAAATCAAGGAAATCTAAATAAAAAAGTTCTAACCCACCTCTCTAAAAGGCTCATGTCTCCCGTGTCACACCGATGTAGTTTTCTTGCGTGCAGTCCACCGCCGGTCCTCAGGTGAACAGCAGCGGATGAGGATGGTTGTTGGGTAGTGGCCGAGAGGCGGCCGCTCATCATGTCGAGATCCTTGAACGACACTCGTTTCTCGGCTTTTGATAGTTGCTCAGCGGCCAGCGCCTGCGTGTTCACGTACAGCGGTATCGATGACGTGGCACTTCCACCAGAGTAGGTGTTGGGAACTCTGTGGCTTTGAGCGCATGTCGTCGTGCTGCTTCGTTTCTTATT</canonical>
            <polymorphic>AAATATTGGTGATATTAAGATAAATAATTTATCAGTTGACGAATTTTTGATATCATTTACAACAATCGAGATATTTGGGCCTAAAGTTGACAATTTAAGTGGGTTTCTATTTTTAGTGAATACGGCATTTCAGATAATATGGATTTCACATTTTTTAAACTAAAAAAAATCATAAATTGGTAAATTTGAAAAAAAAACTCCAGCACGTTTTTTGTCTAGACTTCACGCTAGTTCTAAAAAATAGAAAGTGAGGTATAAGCAATTTGTTGAAGTGCTGGTAATACTTTCTTGCTGCTAATATGTTGACAAAGTTCTTGAAAAAATCCTCCTCGAACAGACCAGGGAACAAAACGATTGACAATTTTCATTTTCAAAAAATTGGTAATTGAACCTGTTACCTAGAGGAAGTGAAAAAAATGTTGGTTCGATTTGAATTCTCTATTCAATGCAAAAAAAATAACACAACAATACCTAGTAACTGGTTAGACCAAAGGTAAAAMGGCACACTTTTGAATGGCAAAGAGAAAAATAGAGAAAGAGGTATATTCCAACATCAAGATAAAAGGAAAAGTCTATTCCGGGTCAGTCGAGTGTGAAAATGGCGACTAATTTAAGTTAGTTGAACCCCTTACAGCACTTTCACTAACTTGGAATCAAAGAAAAATCAAGGAAATCTAAATAAAAAAGTTCTAACCCACCTCTCTAAAAGGCTCATGTCTCCCGTGTCACACCGATGTAGTTTTCTTGCGTGCAGTCCACCGCCGGTCCTCAGGTGAACAGCAGCGGATGAGGATGGTTGTTGGGTAGTGGCCGAGAGGCGGCCGCTCATCATGTCGAGATCCTTGAACGACACTCGTTTCTCGGCTTTTGATAGTTGCTCAGCGGCCAGCGCCTGCGTGTTCACGTACAGCGGTATCGATGACGTGGCACTTCCACCAGAGTAGGTGTTGGGAACTCTGTGGCTTTGAGCGCATGTCGTCGTGCTGCTTCGTTTCTTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTGGTAATTGAACCTGTTA</pcr_primer_p1>
		<pcr_primer_p2>AACTTAAATTAGTCGCCATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAAATTGGTAATTGAACCTGTTACCTAGAGGAAGTGAAAAAAATGTTGGTTCGATTTGAATTCTCTATTCAATGCAAAAAAAATAACACAACAATACCTAGTAACTGGTTAGACCAAAGGTAAAAAGGCACACTTTTGAATGGCAAAGAGAAAAATAGAGAAAGAGGTATATTCCAACATCAAGATAAAAGGAAAAGTCTATTCCGGGTCAGTCGAGTGTGAAAATGGCGACTAATTTAAGTT</canonical_amplicon>
		<polymorphic_amplicon>AAAATTGGTAATTGAACCTGTTACCTAGAGGAAGTGAAAAAAATGTTGGTTCGATTTGAATTCTCTATTCAATGCAAAAAAAATAACACAACAATACCTAGTAACTGGTTAGACCAAAGGTAAAAMGGCACACTTTTGAATGGCAAAGAGAAAAATAGAGAAAGAGGTATATTCCAACATCAAGATAAAAGGAAAAGTCTATTCCGGGTCAGTCGAGTGTGAAAATGGCGACTAATTTAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21170</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>66783</contig_pos>
        <strand></strand>
        <context>GAATGGCAAA[G/A]AGAAAAATAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTAGTAACTGGTTAGACCAAAGGTAAAAAGGCACACTTTTGAATGGCAAA</left_flank>
        <right_flank>AGAAAAATAGAGAAAGAGGTATATTCCAACATCAAGATAAAAGGAAAAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAATTTATCAGTTGACGAATTTTTGATATCATTTACAACAATCGAGATATTTGGGCCTAAAGTTGACAATTTAAGTGGGTTTCTATTTTTAGTGAATACGGCATTTCAGATAATATGGATTTCACATTTTTTAAACTAAAAAAAATCATAAATTGGTAAATTTGAAAAAAAAACTCCAGCACGTTTTTTGTCTAGACTTCACGCTAGTTCTAAAAAATAGAAAGTGAGGTATAAGCAATTTGTTGAAGTGCTGGTAATACTTTCTTGCTGCTAATATGTTGACAAAGTTCTTGAAAAAATCCTCCTCGAACAGACCAGGGAACAAAACGATTGACAATTTTCATTTTCAAAAAATTGGTAATTGAACCTGTTACCTAGAGGAAGTGAAAAAAATGTTGGTTCGATTTGAATTCTCTATTCAATGCAAAAAAAATAACACAACAATACCTAGTAACTGGTTAGACCAAAGGTAAAAAGGCACACTTTTGAATGGCAAAGAGAAAAATAGAGAAAGAGGTATATTCCAACATCAAGATAAAAGGAAAAGTCTATTCCGGGTCAGTCGAGTGTGAAAATGGCGACTAATTTAAGTTAGTTGAACCCCTTACAGCACTTTCACTAACTTGGAATCAAAGAAAAATCAAGGAAATCTAAATAAAAAAGTTCTAACCCACCTCTCTAAAAGGCTCATGTCTCCCGTGTCACACCGATGTAGTTTTCTTGCGTGCAGTCCACCGCCGGTCCTCAGGTGAACAGCAGCGGATGAGGATGGTTGTTGGGTAGTGGCCGAGAGGCGGCCGCTCATCATGTCGAGATCCTTGAACGACACTCGTTTCTCGGCTTTTGATAGTTGCTCAGCGGCCAGCGCCTGCGTGTTCACGTACAGCGGTATCGATGACGTGGCACTTCCACCAGAGTAGGTGTTGGGAACTCTGTGGCTTTGAGCGCATGTCGTCGTGCTGCTTCGTTTCTTATTATTATTGGTTAGCAACAAATGG</canonical>
            <polymorphic>AATAATTTATCAGTTGACGAATTTTTGATATCATTTACAACAATCGAGATATTTGGGCCTAAAGTTGACAATTTAAGTGGGTTTCTATTTTTAGTGAATACGGCATTTCAGATAATATGGATTTCACATTTTTTAAACTAAAAAAAATCATAAATTGGTAAATTTGAAAAAAAAACTCCAGCACGTTTTTTGTCTAGACTTCACGCTAGTTCTAAAAAATAGAAAGTGAGGTATAAGCAATTTGTTGAAGTGCTGGTAATACTTTCTTGCTGCTAATATGTTGACAAAGTTCTTGAAAAAATCCTCCTCGAACAGACCAGGGAACAAAACGATTGACAATTTTCATTTTCAAAAAATTGGTAATTGAACCTGTTACCTAGAGGAAGTGAAAAAAATGTTGGTTCGATTTGAATTCTCTATTCAATGCAAAAAAAATAACACAACAATACCTAGTAACTGGTTAGACCAAAGGTAAAAAGGCACACTTTTGAATGGCAAARAGAAAAATAGAGAAAGAGGTATATTCCAACATCAAGATAAAAGGAAAAGTCTATTCCGGGTCAGTCGAGTGTGAAAATGGCGACTAATTTAAGTTAGTTGAACCCCTTACAGCACTTTCACTAACTTGGAATCAAAGAAAAATCAAGGAAATCTAAATAAAAAAGTTCTAACCCACCTCTCTAAAAGGCTCATGTCTCCCGTGTCACACCGATGTAGTTTTCTTGCGTGCAGTCCACCGCCGGTCCTCAGGTGAACAGCAGCGGATGAGGATGGTTGTTGGGTAGTGGCCGAGAGGCGGCCGCTCATCATGTCGAGATCCTTGAACGACACTCGTTTCTCGGCTTTTGATAGTTGCTCAGCGGCCAGCGCCTGCGTGTTCACGTACAGCGGTATCGATGACGTGGCACTTCCACCAGAGTAGGTGTTGGGAACTCTGTGGCTTTGAGCGCATGTCGTCGTGCTGCTTCGTTTCTTATTATTATTGGTTAGCAACAAATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTGGTAATTGAACCTGTTA</pcr_primer_p1>
		<pcr_primer_p2>AACTTAAATTAGTCGCCATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAAATTGGTAATTGAACCTGTTACCTAGAGGAAGTGAAAAAAATGTTGGTTCGATTTGAATTCTCTATTCAATGCAAAAAAAATAACACAACAATACCTAGTAACTGGTTAGACCAAAGGTAAAAAGGCACACTTTTGAATGGCAAAGAGAAAAATAGAGAAAGAGGTATATTCCAACATCAAGATAAAAGGAAAAGTCTATTCCGGGTCAGTCGAGTGTGAAAATGGCGACTAATTTAAGTT</canonical_amplicon>
		<polymorphic_amplicon>AAAATTGGTAATTGAACCTGTTACCTAGAGGAAGTGAAAAAAATGTTGGTTCGATTTGAATTCTCTATTCAATGCAAAAAAAATAACACAACAATACCTAGTAACTGGTTAGACCAAAGGTAAAAAGGCACACTTTTGAATGGCAAARAGAAAAATAGAGAAAGAGGTATATTCCAACATCAAGATAAAAGGAAAAGTCTATTCCGGGTCAGTCGAGTGTGAAAATGGCGACTAATTTAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21171</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>66911</contig_pos>
        <strand></strand>
        <context>TCACTAACTT[G/A]GAATCAARGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGGCGACTAATTTAAGTTAGTTGAACCCCTTACAGCACTTTCACTAACTT</left_flank>
        <right_flank>GAATCAAAGAAAAATCAAGGAAATCTAAATAAAAAAGTTCTAACCCACCT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTAAACTAAAAAAAATCATAAATTGGTAAATTTGAAAAAAAAACTCCAGCACGTTTTTTGTCTAGACTTCACGCTAGTTCTAAAAAATAGAAAGTGAGGTATAAGCAATTTGTTGAAGTGCTGGTAATACTTTCTTGCTGCTAATATGTTGACAAAGTTCTTGAAAAAATCCTCCTCGAACAGACCAGGGAACAAAACGATTGACAATTTTCATTTTCAAAAAATTGGTAATTGAACCTGTTACCTAGAGGAAGTGAAAAAAATGTTGGTTCGATTTGAATTCTCTATTCAATGCAAAAAAAATAACACAACAATACCTAGTAACTGGTTAGACCAAAGGTAAAAAGGCACACTTTTGAATGGCAAAGAGAAAAATAGAGAAAGAGGTATATTCCAACATCAAGATAAAAGGAAAAGTCTATTCCGGGTCAGTCGAGTGTGAAAATGGCGACTAATTTAAGTTAGTTGAACCCCTTACAGCACTTTCACTAACTTGGAATCAAAGAAAAATCAAGGAAATCTAAATAAAAAAGTTCTAACCCACCTCTCTAAAAGGCTCATGTCTCCCGTGTCACACCGATGTAGTTTTCTTGCGTGCAGTCCACCGCCGGTCCTCAGGTGAACAGCAGCGGATGAGGATGGTTGTTGGGTAGTGGCCGAGAGGCGGCCGCTCATCATGTCGAGATCCTTGAACGACACTCGTTTCTCGGCTTTTGATAGTTGCTCAGCGGCCAGCGCCTGCGTGTTCACGTACAGCGGTATCGATGACGTGGCACTTCCACCAGAGTAGGTGTTGGGAACTCTGTGGCTTTGAGCGCATGTCGTCGTGCTGCTTCGTTTCTTATTATTATTGGTTAGCAACAAATGGTGCAGAGCATTGGGATGAACCCCCTGACGATGCATGGAGCCCGTCGAGGAGTGCGACGACGCCGACACTCGTCGCTCGATCGGGCTCCGTGGCTTGAGATTGGACGACGTGGCGGTGTGGTGTGAAGT</canonical>
            <polymorphic>TTTTTTAAACTAAAAAAAATCATAAATTGGTAAATTTGAAAAAAAAACTCCAGCACGTTTTTTGTCTAGACTTCACGCTAGTTCTAAAAAATAGAAAGTGAGGTATAAGCAATTTGTTGAAGTGCTGGTAATACTTTCTTGCTGCTAATATGTTGACAAAGTTCTTGAAAAAATCCTCCTCGAACAGACCAGGGAACAAAACGATTGACAATTTTCATTTTCAAAAAATTGGTAATTGAACCTGTTACCTAGAGGAAGTGAAAAAAATGTTGGTTCGATTTGAATTCTCTATTCAATGCAAAAAAAATAACACAACAATACCTAGTAACTGGTTAGACCAAAGGTAAAAAGGCACACTTTTGAATGGCAAAGAGAAAAATAGAGAAAGAGGTATATTCCAACATCAAGATAAAAGGAAAAGTCTATTCCGGGTCAGTCGAGTGTGAAAATGGCGACTAATTTAAGTTAGTTGAACCCCTTACAGCACTTTCACTAACTTRGAATCAAAGAAAAATCAAGGAAATCTAAATAAAAAAGTTCTAACCCACCTCTCTAAAAGGCTCATGTCTCCCGTGTCACACCGATGTAGTTTTCTTGCGTGCAGTCCACCGCCGGTCCTCAGGTGAACAGCAGCGGATGAGGATGGTTGTTGGGTAGTGGCCGAGAGGCGGCCGCTCATCATGTCGAGATCCTTGAACGACACTCGTTTCTCGGCTTTTGATAGTTGCTCAGCGGCCAGCGCCTGCGTGTTCACGTACAGCGGTATCGATGACGTGGCACTTCCACCAGAGTAGGTGTTGGGAACTCTGTGGCTTTGAGCGCATGTCGTCGTGCTGCTTCGTTTCTTATTATTATTGGTTAGCAACAAATGGTGCAGAGCATTGGGATGAACCCCCTGACGATGCATGGAGCCCGTCGAGGAGTGCGACGACGCCGACACTCGTCGCTCGATCGGGCTCCGTGGCTTGAGATTGGACGACGTGGCGGTGTGGTGTGAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACTGGTTAGACCAAAGGTAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGACATGAGCCTTTTAGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TAACTGGTTAGACCAAAGGTAAAAAGGCACACTTTTGAATGGCAAAGAGAAAAATAGAGAAAGAGGTATATTCCAACATCAAGATAAAAGGAAAAGTCTATTCCGGGTCAGTCGAGTGTGAAAATGGCGACTAATTTAAGTTAGTTGAACCCCTTACAGCACTTTCACTAACTTGGAATCAAAGAAAAATCAAGGAAATCTAAATAAAAAAGTTCTAACCCACCTCTCTAAAAGGCTCATGTCTC</canonical_amplicon>
		<polymorphic_amplicon>TAACTGGTTAGACCAAAGGTAAAAAGGCACACTTTTGAATGGCAAAGAGAAAAATAGAGAAAGAGGTATATTCCAACATCAAGATAAAAGGAAAAGTCTATTCCGGGTCAGTCGAGTGTGAAAATGGCGACTAATTTAAGTTAGTTGAACCCCTTACAGCACTTTCACTAACTTRGAATCAAAGAAAAATCAAGGAAATCTAAATAAAAAAGTTCTAACCCACCTCTCTAAAAGGCTCATGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21172</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>68032</contig_pos>
        <strand>+</strand>
        <context>GGAAGAGAGA[A/G]GATGAGTCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAATCTTTCTGTTTTGGAATGTTTCCGGTCAGTATTTGAGGAAGAGAGA</left_flank>
        <right_flank>GATGAGTCAAAGGATTCATAACTAAACAGAAAGAAATAAAATTCAGAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCTTCTTTCTGTTTTTTCTCCTCTCTTCGTTTAGCCGCCTGCCTGCCAACCGTCGTCCTCTTCTTCTATTGCTTATCGTTTTGCGAATGGCGTTAATAACCCGTCCTATCACAATTCGACCAGCTTCGTCTTTTCGCCTCGTGTCCTTTTTCCGACGTTCGGCGTTGCGCAATTGAACAGAAGAACAAAGCGTTCTGCGATATTTGATGGATATATATATATATATCGGATTCAGATTCAGAATTTGTAGGTTTCGTTCTATAAGTATTTCTGTAAAAAAAGAATCTTCGGTTGCGCAAGAGAAGAGAGATGTTAGAATAAAAAAACACATAAGTACTGAATAGTCAAAAAGGGATAAGAGTGGGGTCATAAAATTGAATGGTAGACGTTGAAAATTGTTTACCGCCGACAGGTTTGAACTTGCTTTCTGATTTTATGCATTATAGTCTAATCTTTCTGTTTTGGAATGTTTCCGGTCAGTATTTGAGGAAGAGAGAGGATGAGTCAAAGGATTCATAACTAAACAGAAAGAAATAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTTAAAAATTATTTATCTGAAAATAAAACTAATCAAAAATTCAAACTGGAATTTTTTTCAAAATAATTTCATCTAATATAAATTTAACTTCAATAGAAGTATTCAGAAAATTGCCTAAAGAAGGGCTCCCACACTGTT</canonical>
            <polymorphic>GTTCTTCTTTCTGTTTTTTCTCCTCTCTTCGTTTAGCCGCCTGCCTGCCAACCGTCGTCCTCTTCTTCTATTGCTTATCGTTTTGCGAATGGCGTTAATAACCCGTCCTATCACAATTCGACCAGCTTCGTCTTTTCGCCTCGTGTCCTTTTTCCGACGTTCGGCGTTGCGCAATTGAACAGAAGAACAAAGCGTTCTGCGATATTTGATGGATATATATATATATATCGGATTCAGATTCAGAATTTGTAGGTTTCGTTCTATAAGTATTTCTGTAAAAAAAGAATCTTCGGTTGCGCAAGAGAAGAGAGATGTTAGAATAAAAAAACACATAAGTACTGAATAGTCAAAAAGGGATAAGAGTGGGGTCATAAAATTGAATGGTAGACGTTGAAAATTGTTTACCGCCGACAGGTTTGAACTTGCTTTCTGATTTTATGCATTATAGTCTAATCTTTCTGTTTTGGAATGTTTCCGGTCAGTATTTGAGGAAGAGAGARGATGAGTCAAAGGATTCATAACTAAACAGAAAGAAATAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTTAAAAATTATTTATCTGAAAATAAAACTAATCAAAAATTCAAACTGGAATTTTTTTCAAAATAATTTCATCTAATATAAATTTAACTTCAATAGAAGTATTCAGAAAATTGCCTAAAGAAGGGCTCCCACACTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCATTATAGTCTAATCTTTCTGTTT</pcr_primer_p1>
		<pcr_primer_p2>CCAGTTTGAATTTTTGATTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>473</pcr_amplicon_size>
		<canonical_amplicon>TGCATTATAGTCTAATCTTTCTGTTTTGGAATGTTTCCGGTCAGTATTTGAGGAAGAGAGAGGATGAGTCAAAGGATTCATAACTAAACAGAAAGAAATAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTTAAAAATTATTTATCTGAAAATAAAACTAATCAAAAATTCAAACTGG</canonical_amplicon>
		<polymorphic_amplicon>TGCATTATAGTCTAATCTTTCTGTTTTGGAATGTTTCCGGTCAGTATTTGAGGAAGAGAGARGATGAGTCAAAGGATTCATAACTAAACAGAAAGAAATAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTTAAAAATTATTTATCTGAAAATAAAACTAATCAAAAATTCAAACTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21173</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>68021</contig_pos>
        <strand>+</strand>
        <context>TCAGTATTTG[A/G]GGAAGAGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCATTATAGTCTAATCTTTCTGTTTTGGAATGTTTCCGGTCAGTATTTG</left_flank>
        <right_flank>GGAAGAGAGAGGATGAGTCAAAGGATTCATAACTAAACAGAAAGAAATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAACTTTTGGTTCTTCTTTCTGTTTTTTCTCCTCTCTTCGTTTAGCCGCCTGCCTGCCAACCGTCGTCCTCTTCTTCTATTGCTTATCGTTTTGCGAATGGCGTTAATAACCCGTCCTATCACAATTCGACCAGCTTCGTCTTTTCGCCTCGTGTCCTTTTTCCGACGTTCGGCGTTGCGCAATTGAACAGAAGAACAAAGCGTTCTGCGATATTTGATGGATATATATATATATATCGGATTCAGATTCAGAATTTGTAGGTTTCGTTCTATAAGTATTTCTGTAAAAAAAGAATCTTCGGTTGCGCAAGAGAAGAGAGATGTTAGAATAAAAAAACACATAAGTACTGAATAGTCAAAAAGGGATAAGAGTGGGGTCATAAAATTGAATGGTAGACGTTGAAAATTGTTTACCGCCGACAGGTTTGAACTTGCTTTCTGATTTTATGCATTATAGTCTAATCTTTCTGTTTTGGAATGTTTCCGGTCAGTATTTGAGGAAGAGAGAGGATGAGTCAAAGGATTCATAACTAAACAGAAAGAAATAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTTAAAAATTATTTATCTGAAAATAAAACTAATCAAAAATTCAAACTGGAATTTTTTTCAAAATAATTTCATCTAATATAAATTTAACTTCAATAGAAGTATTCAGAAAATTGCCTAAAGAAGGGCT</canonical>
            <polymorphic>GATAACTTTTGGTTCTTCTTTCTGTTTTTTCTCCTCTCTTCGTTTAGCCGCCTGCCTGCCAACCGTCGTCCTCTTCTTCTATTGCTTATCGTTTTGCGAATGGCGTTAATAACCCGTCCTATCACAATTCGACCAGCTTCGTCTTTTCGCCTCGTGTCCTTTTTCCGACGTTCGGCGTTGCGCAATTGAACAGAAGAACAAAGCGTTCTGCGATATTTGATGGATATATATATATATATCGGATTCAGATTCAGAATTTGTAGGTTTCGTTCTATAAGTATTTCTGTAAAAAAAGAATCTTCGGTTGCGCAAGAGAAGAGAGATGTTAGAATAAAAAAACACATAAGTACTGAATAGTCAAAAAGGGATAAGAGTGGGGTCATAAAATTGAATGGTAGACGTTGAAAATTGTTTACCGCCGACAGGTTTGAACTTGCTTTCTGATTTTATGCATTATAGTCTAATCTTTCTGTTTTGGAATGTTTCCGGTCAGTATTTGRGGAAGAGAGAGGATGAGTCAAAGGATTCATAACTAAACAGAAAGAAATAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTTAAAAATTATTTATCTGAAAATAAAACTAATCAAAAATTCAAACTGGAATTTTTTTCAAAATAATTTCATCTAATATAAATTTAACTTCAATAGAAGTATTCAGAAAATTGCCTAAAGAAGGGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTTGCTTTCTGATTTTATGC</pcr_primer_p1>
		<pcr_primer_p2>CCAGTTTGAATTTTTGATTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>AACTTGCTTTCTGATTTTATGCATTATAGTCTAATCTTTCTGTTTTGGAATGTTTCCGGTCAGTATTTGAGGAAGAGAGAGGATGAGTCAAAGGATTCATAACTAAACAGAAAGAAATAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTTAAAAATTATTTATCTGAAAATAAAACTAATCAAAAATTCAAACTGG</canonical_amplicon>
		<polymorphic_amplicon>AACTTGCTTTCTGATTTTATGCATTATAGTCTAATCTTTCTGTTTTGGAATGTTTCCGGTCAGTATTTGRGGAAGAGAGAGGATGAGTCAAAGGATTCATAACTAAACAGAAAGAAATAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTTAAAAATTATTTATCTGAAAATAAAACTAATCAAAAATTCAAACTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21183</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>72690</contig_pos>
        <strand></strand>
        <context>AGTACGAATT[T/C]ATACAGTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATGACTAACAGAAGGAAACAAAGTTTTTCTCAAAAAAAAAGTACGAATT</left_flank>
        <right_flank>ATACAGTTTTTTCAGGCGGATGTGCTTATCACTGGCAAAGGGAAATTTAT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCAAATTCTATTATATTTGAATTAATTGATTAAAAAATATTGATTCAAAAAGAAACTATGGCATGGCCTGCGAAGGGCCCGTCAAAGGTGCGGTCGCAAGTATGGAGAAAAGGCTTTTACTAGAGAAAAGAGGTGAATGGGCAAAATGGGCACACATTTTGAAGAAAATCGAATTCTCAAATTGTGGGAAGAAATGAGGTTACACTGGATTTGTTGCGTAATCTTGAAATTGTAGGATCAGAAGGAATTGGGTCATTTGTAAAAAAGTAAGGCAGTTGGAAAGTTTGTTTTAAGTTTCTATTTTGAGAATTTGGTTTTTTTTCAATTCTAGGCTGTGTAGCTAAATTCCAGCTGAAAATTTTCGATTTTTGAAGAATAGTAATAATGAAATTAAAAAATTGTAAGACAGTTTTTCATTGAATTGAACTTTTTAAAATTAATTTTCATCAATGACTAACAGAAGGAAACAAAGTTTTTCTCAAAAAAAAAGTACGAATTTATACAGTTTTTTCAGGCGGATGTGCTTATCACTGGCAAAGGGAAATTTATGTTCCAATTACCCTGGCAGCATCTTTGACACTCATTTTTACACTTTTCAATCAAAATTTAGACTAAAAAAACTTCAAAAGAAGAACGTTCAAAAGTTCAGTGAAAGATCAACTTACAGTAACAAATGGGTATTCTTGTTTGTAACAACTCATGGTGCTCTGTCTGGGATCGAAAACACAGTAGCCAGCATGCCAAGGAAGTTTGACTTCTTTGTTCATCATTTTTGTTGGATTACCCTCTGAAAAATTTTAAAATTGAAAATTTCAAGGTTTCCTCTAGAATGAACAATTTTTGAAAAACGTTTGTTCAATAAGATATATCGGATAAAAAGTGTGGATGACTATTTTCATCTCGAGGATCGTTTCAAGTGGCAATTAGAAAATCTCGGGGATAAGAAAAAGAAAATGATGGGGATACAATGAGTCAAGGTTGGCAAAAAGATACAATTTT</canonical>
            <polymorphic>GCCAAATTCTATTATATTTGAATTAATTGATTAAAAAATATTGATTCAAAAAGAAACTATGGCATGGCCTGCGAAGGGCCCGTCAAAGGTGCGGTCGCAAGTATGGAGAAAAGGCTTTTACTAGAGAAAAGAGGTGAATGGGCAAAATGGGCACACATTTTGAAGAAAATCGAATTCTCAAATTGTGGGAAGAAATGAGGTTACACTGGATTTGTTGCGTAATCTTGAAATTGTAGGATCAGAAGGAATTGGGTCATTTGTAAAAAAGTAAGGCAGTTGGAAAGTTTGTTTTAAGTTTCTATTTTGAGAATTTGGTTTTTTTTCAATTCTAGGCTGTGTAGCTAAATTCCAGCTGAAAATTTTCGATTTTTGAAGAATAGTAATAATGAAATTAAAAAATTGTAAGACAGTTTTTCATTGAATTGAACTTTTTAAAATTAATTTTCATCAATGACTAACAGAAGGAAACAAAGTTTTTCTCAAAAAAAAAGTACGAATTYATACAGTTTTTTCAGGCGGATGTGCTTATCACTGGCAAAGGGAAATTTATGTTCCAATTACCCTGGCAGCATCTTTGACACTCATTTTTACACTTTTCAATCAAAATTTAGACTAAAAAAACTTCAAAAGAAGAACGTTCAAAAGTTCAGTGAAAGATCAACTTACAGTAACAAATGGGTATTCTTGTTTGTAACAACTCATGGTGCTCTGTCTGGGATCGAAAACACAGTAGCCAGCATGCCAAGGAAGTTTGACTTCTTTGTTCATCATTTTTGTTGGATTACCCTCTGAAAAATTTTAAAATTGAAAATTTCAAGGTTTCCTCTAGAATGAACAATTTTTGAAAAACGTTTGTTCAATAAGATATATCGGATAAAAAGTGTGGATGACTATTTTCATCTCGAGGATCGTTTCAAGTGGCAATTAGAAAATCTCGGGGATAAGAAAAAGAAAATGATGGGGATACAATGAGTCAAGGTTGGCAAAAAGATACAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>191 190 168 138 136 61 48 36 15 13 4</canonical_bands>
                <polymorphic_bands>191 190 186 168 136 61 36 15 13 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAATTTTCATCAATGACTAACAGA</pcr_primer_p1>
		<pcr_primer_p2>CAAGAATACCCATTTGTTACTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAATTTTCATCAATGACTAACAGAAGGAAACAAAGTTTTTCTCAAAAAAAAAGTACGAATTTATACAGTTTTTTCAGGCGGATGTGCTTATCACTGGCAAAGGGAAATTTATGTTCCAATTACCCTGGCAGCATCTTTGACACTCATTTTTACACTTTTCAATCAAAATTTAGACTAAAAAAACTTCAAAAGAAGAACGTTCAAAAGTTCAGTGAAAGATCAACTTACAGTAACAAATGGGTATTCTTG</canonical_amplicon>
		<polymorphic_amplicon>TTAATTTTCATCAATGACTAACAGAAGGAAACAAAGTTTTTCTCAAAAAAAAAGTACGAATTYATACAGTTTTTTCAGGCGGATGTGCTTATCACTGGCAAAGGGAAATTTATGTTCCAATTACCCTGGCAGCATCTTTGACACTCATTTTTACACTTTTCAATCAAAATTTAGACTAAAAAAACTTCAAAAGAAGAACGTTCAAAAGTTCAGTGAAAGATCAACTTACAGTAACAAATGGGTATTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21184</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>72670</contig_pos>
        <strand>+</strand>
        <context>AAAGTTTTTC[A/T]CYAAAAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTAAAATTAATTTTCATCAATGACTAACAGAAGGAAACAAAGTTTTTC</left_flank>
        <right_flank>CAAAAAAAAAGTACGAATTTATACAGTTTTTTCAGGCGGATGTGCTTATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTATCATTTTGTAGTACTCGCCAAATTCTATTATATTTGAATTAATTGATTAAAAAATATTGATTCAAAAAGAAACTATGGCATGGCCTGCGAAGGGCCCGTCAAAGGTGCGGTCGCAAGTATGGAGAAAAGGCTTTTACTAGAGAAAAGAGGTGAATGGGCAAAATGGGCACACATTTTGAAGAAAATCGAATTCTCAAATTGTGGGAAGAAATGAGGTTACACTGGATTTGTTGCGTAATCTTGAAATTGTAGGATCAGAAGGAATTGGGTCATTTGTAAAAAAGTAAGGCAGTTGGAAAGTTTGTTTTAAGTTTCTATTTTGAGAATTTGGTTTTTTTTCAATTCTAGGCTGTGTAGCTAAATTCCAGCTGAAAATTTTCGATTTTTGAAGAATAGTAATAATGAAATTAAAAAATTGTAAGACAGTTTTTCATTGAATTGAACTTTTTAAAATTAATTTTCATCAATGACTAACAGAAGGAAACAAAGTTTTTCTCAAAAAAAAAGTACGAATTTATACAGTTTTTTCAGGCGGATGTGCTTATCACTGGCAAAGGGAAATTTATGTTCCAATTACCCTGGCAGCATCTTTGACACTCATTTTTACACTTTTCAATCAAAATTTAGACTAAAAAAACTTCAAAAGAAGAACGTTCAAAAGTTCAGTGAAAGATCAACTTACAGTAACAAATGGGTATTCTTGTTTGTAACAACTCATGGTGCTCTGTCTGGGATCGAAAACACAGTAGCCAGCATGCCAAGGAAGTTTGACTTCTTTGTTCATCATTTTTGTTGGATTACCCTCTGAAAAATTTTAAAATTGAAAATTTCAAGGTTTCCTCTAGAATGAACAATTTTTGAAAAACGTTTGTTCAATAAGATATATCGGATAAAAAGTGTGGATGACTATTTTCATCTCGAGGATCGTTTCAAGTGGCAATTAGAAAATCTCGGGGATAAGAAAAAGAAAATGATGGGGATACAATGAGTCAAGGT</canonical>
            <polymorphic>AGTATCATTTTGTAGTACTCGCCAAATTCTATTATATTTGAATTAATTGATTAAAAAATATTGATTCAAAAAGAAACTATGGCATGGCCTGCGAAGGGCCCGTCAAAGGTGCGGTCGCAAGTATGGAGAAAAGGCTTTTACTAGAGAAAAGAGGTGAATGGGCAAAATGGGCACACATTTTGAAGAAAATCGAATTCTCAAATTGTGGGAAGAAATGAGGTTACACTGGATTTGTTGCGTAATCTTGAAATTGTAGGATCAGAAGGAATTGGGTCATTTGTAAAAAAGTAAGGCAGTTGGAAAGTTTGTTTTAAGTTTCTATTTTGAGAATTTGGTTTTTTTTCAATTCTAGGCTGTGTAGCTAAATTCCAGCTGAAAATTTTCGATTTTTGAAGAATAGTAATAATGAAATTAAAAAATTGTAAGACAGTTTTTCATTGAATTGAACTTTTTAAAATTAATTTTCATCAATGACTAACAGAAGGAAACAAAGTTTTTCWCAAAAAAAAAGTACGAATTTATACAGTTTTTTCAGGCGGATGTGCTTATCACTGGCAAAGGGAAATTTATGTTCCAATTACCCTGGCAGCATCTTTGACACTCATTTTTACACTTTTCAATCAAAATTTAGACTAAAAAAACTTCAAAAGAAGAACGTTCAAAAGTTCAGTGAAAGATCAACTTACAGTAACAAATGGGTATTCTTGTTTGTAACAACTCATGGTGCTCTGTCTGGGATCGAAAACACAGTAGCCAGCATGCCAAGGAAGTTTGACTTCTTTGTTCATCATTTTTGTTGGATTACCCTCTGAAAAATTTTAAAATTGAAAATTTCAAGGTTTCCTCTAGAATGAACAATTTTTGAAAAACGTTTGTTCAATAAGATATATCGGATAAAAAGTGTGGATGACTATTTTCATCTCGAGGATCGTTTCAAGTGGCAATTAGAAAATCTCGGGGATAAGAAAAAGAAAATGATGGGGATACAATGAGTCAAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCAATTCTAGGCTGTGTAG</pcr_primer_p1>
		<pcr_primer_p2>CCAGGGTAATTGGAACATAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCAATTCTAGGCTGTGTAGCTAAATTCCAGCTGAAAATTTTCGATTTTTGAAGAATAGTAATAATGAAATTAAAAAATTGTAAGACAGTTTTTCATTGAATTGAACTTTTTAAAATTAATTTTCATCAATGACTAACAGAAGGAAACAAAGTTTTTCTCAAAAAAAAAGTACGAATTTATACAGTTTTTTCAGGCGGATGTGCTTATCACTGGCAAAGGGAAATTTATGTTCCAATTACCCTGG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCAATTCTAGGCTGTGTAGCTAAATTCCAGCTGAAAATTTTCGATTTTTGAAGAATAGTAATAATGAAATTAAAAAATTGTAAGACAGTTTTTCATTGAATTGAACTTTTTAAAATTAATTTTCATCAATGACTAACAGAAGGAAACAAAGTTTTTCWCAAAAAAAAAGTACGAATTTATACAGTTTTTTCAGGCGGATGTGCTTATCACTGGCAAAGGGAAATTTATGTTCCAATTACCCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21185</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>72655</contig_pos>
        <strand>+</strand>
        <context>CTAACAGAAG[C/G]AAACAAAGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCATTGAATTGAACTTTTTAAAATTAATTTTCATCAATGACTAACAGAAG</left_flank>
        <right_flank>AAACAAAGTTTTTCTCAAAAAAAAAGTACGAATTTATACAGTTTTTTCAG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACAATTCTCCAAATAGTATCATTTTGTAGTACTCGCCAAATTCTATTATATTTGAATTAATTGATTAAAAAATATTGATTCAAAAAGAAACTATGGCATGGCCTGCGAAGGGCCCGTCAAAGGTGCGGTCGCAAGTATGGAGAAAAGGCTTTTACTAGAGAAAAGAGGTGAATGGGCAAAATGGGCACACATTTTGAAGAAAATCGAATTCTCAAATTGTGGGAAGAAATGAGGTTACACTGGATTTGTTGCGTAATCTTGAAATTGTAGGATCAGAAGGAATTGGGTCATTTGTAAAAAAGTAAGGCAGTTGGAAAGTTTGTTTTAAGTTTCTATTTTGAGAATTTGGTTTTTTTTCAATTCTAGGCTGTGTAGCTAAATTCCAGCTGAAAATTTTCGATTTTTGAAGAATAGTAATAATGAAATTAAAAAATTGTAAGACAGTTTTTCATTGAATTGAACTTTTTAAAATTAATTTTCATCAATGACTAACAGAAGGAAACAAAGTTTTTCTCAAAAAAAAAGTACGAATTTATACAGTTTTTTCAGGCGGATGTGCTTATCACTGGCAAAGGGAAATTTATGTTCCAATTACCCTGGCAGCATCTTTGACACTCATTTTTACACTTTTCAATCAAAATTTAGACTAAAAAAACTTCAAAAGAAGAACGTTCAAAAGTTCAGTGAAAGATCAACTTACAGTAACAAATGGGTATTCTTGTTTGTAACAACTCATGGTGCTCTGTCTGGGATCGAAAACACAGTAGCCAGCATGCCAAGGAAGTTTGACTTCTTTGTTCATCATTTTTGTTGGATTACCCTCTGAAAAATTTTAAAATTGAAAATTTCAAGGTTTCCTCTAGAATGAACAATTTTTGAAAAACGTTTGTTCAATAAGATATATCGGATAAAAAGTGTGGATGACTATTTTCATCTCGAGGATCGTTTCAAGTGGCAATTAGAAAATCTCGGGGATAAGAAAAAGAAAATGATGGGGAT</canonical>
            <polymorphic>CACAATTCTCCAAATAGTATCATTTTGTAGTACTCGCCAAATTCTATTATATTTGAATTAATTGATTAAAAAATATTGATTCAAAAAGAAACTATGGCATGGCCTGCGAAGGGCCCGTCAAAGGTGCGGTCGCAAGTATGGAGAAAAGGCTTTTACTAGAGAAAAGAGGTGAATGGGCAAAATGGGCACACATTTTGAAGAAAATCGAATTCTCAAATTGTGGGAAGAAATGAGGTTACACTGGATTTGTTGCGTAATCTTGAAATTGTAGGATCAGAAGGAATTGGGTCATTTGTAAAAAAGTAAGGCAGTTGGAAAGTTTGTTTTAAGTTTCTATTTTGAGAATTTGGTTTTTTTTCAATTCTAGGCTGTGTAGCTAAATTCCAGCTGAAAATTTTCGATTTTTGAAGAATAGTAATAATGAAATTAAAAAATTGTAAGACAGTTTTTCATTGAATTGAACTTTTTAAAATTAATTTTCATCAATGACTAACAGAAGSAAACAAAGTTTTTCTCAAAAAAAAAGTACGAATTTATACAGTTTTTTCAGGCGGATGTGCTTATCACTGGCAAAGGGAAATTTATGTTCCAATTACCCTGGCAGCATCTTTGACACTCATTTTTACACTTTTCAATCAAAATTTAGACTAAAAAAACTTCAAAAGAAGAACGTTCAAAAGTTCAGTGAAAGATCAACTTACAGTAACAAATGGGTATTCTTGTTTGTAACAACTCATGGTGCTCTGTCTGGGATCGAAAACACAGTAGCCAGCATGCCAAGGAAGTTTGACTTCTTTGTTCATCATTTTTGTTGGATTACCCTCTGAAAAATTTTAAAATTGAAAATTTCAAGGTTTCCTCTAGAATGAACAATTTTTGAAAAACGTTTGTTCAATAAGATATATCGGATAAAAAGTGTGGATGACTATTTTCATCTCGAGGATCGTTTCAAGTGGCAATTAGAAAATCTCGGGGATAAGAAAAAGAAAATGATGGGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCAATTCTAGGCTGTGTAG</pcr_primer_p1>
		<pcr_primer_p2>CCAGGGTAATTGGAACATAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCAATTCTAGGCTGTGTAGCTAAATTCCAGCTGAAAATTTTCGATTTTTGAAGAATAGTAATAATGAAATTAAAAAATTGTAAGACAGTTTTTCATTGAATTGAACTTTTTAAAATTAATTTTCATCAATGACTAACAGAAGGAAACAAAGTTTTTCTCAAAAAAAAAGTACGAATTTATACAGTTTTTTCAGGCGGATGTGCTTATCACTGGCAAAGGGAAATTTATGTTCCAATTACCCTGG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCAATTCTAGGCTGTGTAGCTAAATTCCAGCTGAAAATTTTCGATTTTTGAAGAATAGTAATAATGAAATTAAAAAATTGTAAGACAGTTTTTCATTGAATTGAACTTTTTAAAATTAATTTTCATCAATGACTAACAGAAGSAAACAAAGTTTTTCTCAAAAAAAAAGTACGAATTTATACAGTTTTTTCAGGCGGATGTGCTTATCACTGGCAAAGGGAAATTTATGTTCCAATTACCCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21187</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>72612</contig_pos>
        <strand>+</strand>
        <context>TTTTCATTGA[A/C]TTGAACTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAGAATAGTAATAATGAAATTAAAAAATTGTAAGACAGTTTTTCATTGA</left_flank>
        <right_flank>TTGAACTTTTTAAAATTAATTTTCATCAATGACTAACAGAAGGAAACAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTCAGCTACGTTATGACTTGTAACTTTGTTCATAGACAAGACACAATTCTCCAAATAGTATCATTTTGTAGTACTCGCCAAATTCTATTATATTTGAATTAATTGATTAAAAAATATTGATTCAAAAAGAAACTATGGCATGGCCTGCGAAGGGCCCGTCAAAGGTGCGGTCGCAAGTATGGAGAAAAGGCTTTTACTAGAGAAAAGAGGTGAATGGGCAAAATGGGCACACATTTTGAAGAAAATCGAATTCTCAAATTGTGGGAAGAAATGAGGTTACACTGGATTTGTTGCGTAATCTTGAAATTGTAGGATCAGAAGGAATTGGGTCATTTGTAAAAAAGTAAGGCAGTTGGAAAGTTTGTTTTAAGTTTCTATTTTGAGAATTTGGTTTTTTTTCAATTCTAGGCTGTGTAGCTAAATTCCAGCTGAAAATTTTCGATTTTTGAAGAATAGTAATAATGAAATTAAAAAATTGTAAGACAGTTTTTCATTGAATTGAACTTTTTAAAATTAATTTTCATCAATGACTAACAGAAGGAAACAAAGTTTTTCTCAAAAAAAAAGTACGAATTTATACAGTTTTTTCAGGCGGATGTGCTTATCACTGGCAAAGGGAAATTTATGTTCCAATTACCCTGGCAGCATCTTTGACACTCATTTTTACACTTTTCAATCAAAATTTAGACTAAAAAAACTTCAAAAGAAGAACGTTCAAAAGTTCAGTGAAAGATCAACTTACAGTAACAAATGGGTATTCTTGTTTGTAACAACTCATGGTGCTCTGTCTGGGATCGAAAACACAGTAGCCAGCATGCCAAGGAAGTTTGACTTCTTTGTTCATCATTTTTGTTGGATTACCCTCTGAAAAATTTTAAAATTGAAAATTTCAAGGTTTCCTCTAGAATGAACAATTTTTGAAAAACGTTTGTTCAATAAGATATATCGGATAAAAAGTGTGGATGACTATTTTCATCTCGAGGATCGTTTCAAGTGGC</canonical>
            <polymorphic>AACTCAGCTACGTTATGACTTGTAACTTTGTTCATAGACAAGACACAATTCTCCAAATAGTATCATTTTGTAGTACTCGCCAAATTCTATTATATTTGAATTAATTGATTAAAAAATATTGATTCAAAAAGAAACTATGGCATGGCCTGCGAAGGGCCCGTCAAAGGTGCGGTCGCAAGTATGGAGAAAAGGCTTTTACTAGAGAAAAGAGGTGAATGGGCAAAATGGGCACACATTTTGAAGAAAATCGAATTCTCAAATTGTGGGAAGAAATGAGGTTACACTGGATTTGTTGCGTAATCTTGAAATTGTAGGATCAGAAGGAATTGGGTCATTTGTAAAAAAGTAAGGCAGTTGGAAAGTTTGTTTTAAGTTTCTATTTTGAGAATTTGGTTTTTTTTCAATTCTAGGCTGTGTAGCTAAATTCCAGCTGAAAATTTTCGATTTTTGAAGAATAGTAATAATGAAATTAAAAAATTGTAAGACAGTTTTTCATTGAMTTGAACTTTTTAAAATTAATTTTCATCAATGACTAACAGAAGGAAACAAAGTTTTTCTCAAAAAAAAAGTACGAATTTATACAGTTTTTTCAGGCGGATGTGCTTATCACTGGCAAAGGGAAATTTATGTTCCAATTACCCTGGCAGCATCTTTGACACTCATTTTTACACTTTTCAATCAAAATTTAGACTAAAAAAACTTCAAAAGAAGAACGTTCAAAAGTTCAGTGAAAGATCAACTTACAGTAACAAATGGGTATTCTTGTTTGTAACAACTCATGGTGCTCTGTCTGGGATCGAAAACACAGTAGCCAGCATGCCAAGGAAGTTTGACTTCTTTGTTCATCATTTTTGTTGGATTACCCTCTGAAAAATTTTAAAATTGAAAATTTCAAGGTTTCCTCTAGAATGAACAATTTTTGAAAAACGTTTGTTCAATAAGATATATCGGATAAAAAGTGTGGATGACTATTTTCATCTCGAGGATCGTTTCAAGTGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>190 148 86 62 56 49 48 48 46 36 32 27 23 20 18 16 16 15 13 12 8 8 8 7 4 4</canonical_bands>
                <polymorphic_bands>190 148 86 62 56 49 48 48 46 38 36 32 27 20 18 16 16 13 12 8 8 8 7 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCAATTCTAGGCTGTGTAG</pcr_primer_p1>
		<pcr_primer_p2>CCAGGGTAATTGGAACATAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCAATTCTAGGCTGTGTAGCTAAATTCCAGCTGAAAATTTTCGATTTTTGAAGAATAGTAATAATGAAATTAAAAAATTGTAAGACAGTTTTTCATTGAATTGAACTTTTTAAAATTAATTTTCATCAATGACTAACAGAAGGAAACAAAGTTTTTCTCAAAAAAAAAGTACGAATTTATACAGTTTTTTCAGGCGGATGTGCTTATCACTGGCAAAGGGAAATTTATGTTCCAATTACCCTGG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCAATTCTAGGCTGTGTAGCTAAATTCCAGCTGAAAATTTTCGATTTTTGAAGAATAGTAATAATGAAATTAAAAAATTGTAAGACAGTTTTTCATTGAMTTGAACTTTTTAAAATTAATTTTCATCAATGACTAACAGAAGGAAACAAAGTTTTTCTCAAAAAAAAAGTACGAATTTATACAGTTTTTTCAGGCGGATGTGCTTATCACTGGCAAAGGGAAATTTATGTTCCAATTACCCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21188</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>120001</contig_pos>
        <strand></strand>
        <context>CTATGCGAGC[T/G]GTKTGGAGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CACATAACTTCTAGCTGAGAACTGTCTTGCGGCCTAATTCCTATGCGAGC</left_flank>
        <right_flank>GTGTGGAGAGCATGACAAAAAAGTTGAACACATTTGAGAGTGAAAGTGGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATGGAAATTGTAGTAAAGACGAGTGTGCTGATCATTTTTCATAATTTCGAAAAGGCCCAAAAATGTTTTTAAGTACCCGAAACCCCGCCTCAGAAAGGCCATTTTTCGAAAAAAAAACTCGTTGTGGCCTAGAATTTTCACTTTCCCCATCGTCAGTTTTCGCCCTTTTTGGTCATTTCTCATGGGTTCCTCTACAATTTTCTTACTTAAATAAGATGGAAAAAATGGAACAGCTAATAAATCACCGATTTCAGTAAGAAAAACCTGGGAAAACCCATACTAAATATTCGAAAACTTGAATAATTCACTTTTCTGAAACATGACCTCGTTGAAGCTGGTTTTCTGTCGCTTAGAAAAGTTTTTGAGCGTTTTTGTTAAGATTTTCAGAATCAGGACTGGCATTTATAGAATTCTGGACATTTGAAATGGATAGTGTAGATGACGGAGCACATAACTTCTAGCTGAGAACTGTCTTGCGGCCTAATTCCTATGCGAGCTGTGTGGAGAGCATGACAAAAAAGTTGAACACATTTGAGAGTGAAAGTGGACAAGGGTTTTGGGATTCCATAATAAATAGATCAGCTCCAACTTTTGCATTTTCCGCAAACACCGTCTTGCGCGAATCTCTCAGGACAGTGAGCTCGTTGTTGTGGGTCATATCTTTCAGACAAGATAACAACAACTGAATTCGTACAAAAATGTACTTATAATTGCACTGCGTCAATTTTCAGCCACAAATGCGCTAAATGAACTTTGATTGGGCTAAAACGAAAAAAATGGACGAACAACATTTGGATCTTGGGTTATTTTCACTACCACATGTTATGATAACGCGGATTTATCTTTTTTATTCAATATAAAGTCGATTCAAAACTGATTGAATGATAAAAACTTGTGCTGACAAAAAACACATTTGAACGTCGCGCTATGTTATTGTGTTATTGGGGCACACTTGCTGCATGAACTTCTTTTCCAAAAAGCCACGTTTCACTGATTTC</canonical>
            <polymorphic>TGATGGAAATTGTAGTAAAGACGAGTGTGCTGATCATTTTTCATAATTTCGAAAAGGCCCAAAAATGTTTTTAAGTACCCGAAACCCCGCCTCAGAAAGGCCATTTTTCGAAAAAAAAACTCGTTGTGGCCTAGAATTTTCACTTTCCCCATCGTCAGTTTTCGCCCTTTTTGGTCATTTCTCATGGGTTCCTCTACAATTTTCTTACTTAAATAAGATGGAAAAAATGGAACAGCTAATAAATCACCGATTTCAGTAAGAAAAACCTGGGAAAACCCATACTAAATATTCGAAAACTTGAATAATTCACTTTTCTGAAACATGACCTCGTTGAAGCTGGTTTTCTGTCGCTTAGAAAAGTTTTTGAGCGTTTTTGTTAAGATTTTCAGAATCAGGACTGGCATTTATAGAATTCTGGACATTTGAAATGGATAGTGTAGATGACGGAGCACATAACTTCTAGCTGAGAACTGTCTTGCGGCCTAATTCCTATGCGAGCKGTGTGGAGAGCATGACAAAAAAGTTGAACACATTTGAGAGTGAAAGTGGACAAGGGTTTTGGGATTCCATAATAAATAGATCAGCTCCAACTTTTGCATTTTCCGCAAACACCGTCTTGCGCGAATCTCTCAGGACAGTGAGCTCGTTGTTGTGGGTCATATCTTTCAGACAAGATAACAACAACTGAATTCGTACAAAAATGTACTTATAATTGCACTGCGTCAATTTTCAGCCACAAATGCGCTAAATGAACTTTGATTGGGCTAAAACGAAAAAAATGGACGAACAACATTTGGATCTTGGGTTATTTTCACTACCACATGTTATGATAACGCGGATTTATCTTTTTTATTCAATATAAAGTCGATTCAAAACTGATTGAATGATAAAAACTTGTGCTGACAAAAAACACATTTGAACGTCGCGCTATGTTATTGTGTTATTGGGGCACACTTGCTGCATGAACTTCTTTTCCAAAAAGCCACGTTTCACTGATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>358 235 127 101 86 58 35</canonical_bands>
                <polymorphic_bands>358 235 127 121 101 58</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>218 127 106 101 91 86 58 57 43 31 29 18 18 17</canonical_bands>
                <polymorphic_bands>218 127 106 103 101 91 58 57 43 31 29 18 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCTGTCGCTTAGAAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TGGAGCTGATCTATTTATTATGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCTGTCGCTTAGAAAAGTTTTTGAGCGTTTTTGTTAAGATTTTCAGAATCAGGACTGGCATTTATAGAATTCTGGACATTTGAAATGGATAGTGTAGATGACGGAGCACATAACTTCTAGCTGAGAACTGTCTTGCGGCCTAATTCCTATGCGAGCTGTGTGGAGAGCATGACAAAAAAGTTGAACACATTTGAGAGTGAAAGTGGACAAGGGTTTTGGGATTCCATAATAAATAGATCAGCTCCA</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCTGTCGCTTAGAAAAGTTTTTGAGCGTTTTTGTTAAGATTTTCAGAATCAGGACTGGCATTTATAGAATTCTGGACATTTGAAATGGATAGTGTAGATGACGGAGCACATAACTTCTAGCTGAGAACTGTCTTGCGGCCTAATTCCTATGCGAGCKGTGTGGAGAGCATGACAAAAAAGTTGAACACATTTGAGAGTGAAAGTGGACAAGGGTTTTGGGATTCCATAATAAATAGATCAGCTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21189</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>120004</contig_pos>
        <strand></strand>
        <context>TGCGAGCKGT[G/T]TGGAGAGCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATAACTTCTAGCTGAGAACTGTCTTGCGGCCTAATTCCTATGCGAGCTGT</left_flank>
        <right_flank>TGGAGAGCATGACAAAAAAGTTGAACACATTTGAGAGTGAAAGTGGACAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAAATTGTAGTAAAGACGAGTGTGCTGATCATTTTTCATAATTTCGAAAAGGCCCAAAAATGTTTTTAAGTACCCGAAACCCCGCCTCAGAAAGGCCATTTTTCGAAAAAAAAACTCGTTGTGGCCTAGAATTTTCACTTTCCCCATCGTCAGTTTTCGCCCTTTTTGGTCATTTCTCATGGGTTCCTCTACAATTTTCTTACTTAAATAAGATGGAAAAAATGGAACAGCTAATAAATCACCGATTTCAGTAAGAAAAACCTGGGAAAACCCATACTAAATATTCGAAAACTTGAATAATTCACTTTTCTGAAACATGACCTCGTTGAAGCTGGTTTTCTGTCGCTTAGAAAAGTTTTTGAGCGTTTTTGTTAAGATTTTCAGAATCAGGACTGGCATTTATAGAATTCTGGACATTTGAAATGGATAGTGTAGATGACGGAGCACATAACTTCTAGCTGAGAACTGTCTTGCGGCCTAATTCCTATGCGAGCTGTGTGGAGAGCATGACAAAAAAGTTGAACACATTTGAGAGTGAAAGTGGACAAGGGTTTTGGGATTCCATAATAAATAGATCAGCTCCAACTTTTGCATTTTCCGCAAACACCGTCTTGCGCGAATCTCTCAGGACAGTGAGCTCGTTGTTGTGGGTCATATCTTTCAGACAAGATAACAACAACTGAATTCGTACAAAAATGTACTTATAATTGCACTGCGTCAATTTTCAGCCACAAATGCGCTAAATGAACTTTGATTGGGCTAAAACGAAAAAAATGGACGAACAACATTTGGATCTTGGGTTATTTTCACTACCACATGTTATGATAACGCGGATTTATCTTTTTTATTCAATATAAAGTCGATTCAAAACTGATTGAATGATAAAAACTTGTGCTGACAAAAAACACATTTGAACGTCGCGCTATGTTATTGTGTTATTGGGGCACACTTGCTGCATGAACTTCTTTTCCAAAAAGCCACGTTTCACTGATTTCTTG</canonical>
            <polymorphic>TGGAAATTGTAGTAAAGACGAGTGTGCTGATCATTTTTCATAATTTCGAAAAGGCCCAAAAATGTTTTTAAGTACCCGAAACCCCGCCTCAGAAAGGCCATTTTTCGAAAAAAAAACTCGTTGTGGCCTAGAATTTTCACTTTCCCCATCGTCAGTTTTCGCCCTTTTTGGTCATTTCTCATGGGTTCCTCTACAATTTTCTTACTTAAATAAGATGGAAAAAATGGAACAGCTAATAAATCACCGATTTCAGTAAGAAAAACCTGGGAAAACCCATACTAAATATTCGAAAACTTGAATAATTCACTTTTCTGAAACATGACCTCGTTGAAGCTGGTTTTCTGTCGCTTAGAAAAGTTTTTGAGCGTTTTTGTTAAGATTTTCAGAATCAGGACTGGCATTTATAGAATTCTGGACATTTGAAATGGATAGTGTAGATGACGGAGCACATAACTTCTAGCTGAGAACTGTCTTGCGGCCTAATTCCTATGCGAGCTGTKTGGAGAGCATGACAAAAAAGTTGAACACATTTGAGAGTGAAAGTGGACAAGGGTTTTGGGATTCCATAATAAATAGATCAGCTCCAACTTTTGCATTTTCCGCAAACACCGTCTTGCGCGAATCTCTCAGGACAGTGAGCTCGTTGTTGTGGGTCATATCTTTCAGACAAGATAACAACAACTGAATTCGTACAAAAATGTACTTATAATTGCACTGCGTCAATTTTCAGCCACAAATGCGCTAAATGAACTTTGATTGGGCTAAAACGAAAAAAATGGACGAACAACATTTGGATCTTGGGTTATTTTCACTACCACATGTTATGATAACGCGGATTTATCTTTTTTATTCAATATAAAGTCGATTCAAAACTGATTGAATGATAAAAACTTGTGCTGACAAAAAACACATTTGAACGTCGCGCTATGTTATTGTGTTATTGGGGCACACTTGCTGCATGAACTTCTTTTCCAAAAAGCCACGTTTCACTGATTTCTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>128 104 99 79 78 63 63 63 52 32 29 28 25 24 19 14 14 14 13 12 11 11 7 6 6 2 2 2</canonical_bands>
                <polymorphic_bands>128 104 99 79 79 78 63 63 63 32 29 28 24 19 14 14 14 13 12 11 11 7 6 6 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCTGTCGCTTAGAAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TGGAGCTGATCTATTTATTATGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCTGTCGCTTAGAAAAGTTTTTGAGCGTTTTTGTTAAGATTTTCAGAATCAGGACTGGCATTTATAGAATTCTGGACATTTGAAATGGATAGTGTAGATGACGGAGCACATAACTTCTAGCTGAGAACTGTCTTGCGGCCTAATTCCTATGCGAGCTGTGTGGAGAGCATGACAAAAAAGTTGAACACATTTGAGAGTGAAAGTGGACAAGGGTTTTGGGATTCCATAATAAATAGATCAGCTCCA</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCTGTCGCTTAGAAAAGTTTTTGAGCGTTTTTGTTAAGATTTTCAGAATCAGGACTGGCATTTATAGAATTCTGGACATTTGAAATGGATAGTGTAGATGACGGAGCACATAACTTCTAGCTGAGAACTGTCTTGCGGCCTAATTCCTATGCGAGCTGTKTGGAGAGCATGACAAAAAAGTTGAACACATTTGAGAGTGAAAGTGGACAAGGGTTTTGGGATTCCATAATAAATAGATCAGCTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21192</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>120450</contig_pos>
        <strand></strand>
        <context>TGTTATTGGG[G/A]CACACTTGCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GCTGACAAAAAACACATTTGAACGTCGCGCTATGTTATTGTGTTATTGGG</left_flank>
        <right_flank>CACACTTGCTGCATGAACTTCTTTTCCAAAAAGCCACGTTTCACTGATTT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACATAACTTCTAGCTGAGAACTGTCTTGCGGCCTAATTCCTATGCGAGCTGTGTGGAGAGCATGACAAAAAAGTTGAACACATTTGAGAGTGAAAGTGGACAAGGGTTTTGGGATTCCATAATAAATAGATCAGCTCCAACTTTTGCATTTTCCGCAAACACCGTCTTGCGCGAATCTCTCAGGACAGTGAGCTCGTTGTTGTGGGTCATATCTTTCAGACAAGATAACAACAACTGAATTCGTACAAAAATGTACTTATAATTGCACTGCGTCAATTTTCAGCCACAAATGCGCTAAATGAACTTTGATTGGGCTAAAACGAAAAAAATGGACGAACAACATTTGGATCTTGGGTTATTTTCACTACCACATGTTATGATAACGCGGATTTATCTTTTTTATTCAATATAAAGTCGATTCAAAACTGATTGAATGATAAAAACTTGTGCTGACAAAAAACACATTTGAACGTCGCGCTATGTTATTGTGTTATTGGGGCACACTTGCTGCATGAACTTCTTTTCCAAAAAGCCACGTTTCACTGATTTCTTGAGCTTCTCGCAATTTGCAAAGCTGACGAATATAAGATTTTTAATTACCGGAAGATGGAGATGCCTCCAGAGAGGGCAACCAAGCAGAGGGATCGCCAAAAAACATGACATTTCTTCCTGAAAGTCACTATAATTTATTCCGAACTGCAAACATCTGTCCAGTGACTCACTGCTCCCCATGCTTTCCTCAAAACGTTTCATCGATTTTTAAATCATTTTTACGGTTTCTTTCTTGTTTCTTTATCTTTCCTTTTGAATAATTCTTACATTTTACACGTTTATTGGCTGTAGAAACCCATAAAAAGCAAAAAATCCAAACTAGATTTAAATTTTTTTGGCATCATTTTTACAAGAAGATCATCATAACAATAATATGTAGCATTTATAGGTTTTACTTATATTTGTAGAATCCCTCTCCCGATTTGCGACCAGTCTTTCCAGCGTCGA</canonical>
            <polymorphic>CACATAACTTCTAGCTGAGAACTGTCTTGCGGCCTAATTCCTATGCGAGCTGTGTGGAGAGCATGACAAAAAAGTTGAACACATTTGAGAGTGAAAGTGGACAAGGGTTTTGGGATTCCATAATAAATAGATCAGCTCCAACTTTTGCATTTTCCGCAAACACCGTCTTGCGCGAATCTCTCAGGACAGTGAGCTCGTTGTTGTGGGTCATATCTTTCAGACAAGATAACAACAACTGAATTCGTACAAAAATGTACTTATAATTGCACTGCGTCAATTTTCAGCCACAAATGCGCTAAATGAACTTTGATTGGGCTAAAACGAAAAAAATGGACGAACAACATTTGGATCTTGGGTTATTTTCACTACCACATGTTATGATAACGCGGATTTATCTTTTTTATTCAATATAAAGTCGATTCAAAACTGATTGAATGATAAAAACTTGTGCTGACAAAAAACACATTTGAACGTCGCGCTATGTTATTGTGTTATTGGGRCACACTTGCTGCATGAACTTCTTTTCCAAAAAGCCACGTTTCACTGATTTCTTGAGCTTCTCGCAATTTGCAAAGCTGACGAATATAAGATTTTTAATTACCGGAAGATGGAGATGCCTCCAGAGAGGGCAACCAAGCAGAGGGATCGCCAAAAAACATGACATTTCTTCCTGAAAGTCACTATAATTTATTCCGAACTGCAAACATCTGTCCAGTGACTCACTGCTCCCCATGCTTTCCTCAAAACGTTTCATCGATTTTTAAATCATTTTTACGGTTTCTTTCTTGTTTCTTTATCTTTCCTTTTGAATAATTCTTACATTTTACACGTTTATTGGCTGTAGAAACCCATAAAAAGCAAAAAATCCAAACTAGATTTAAATTTTTTTGGCATCATTTTTACAAGAAGATCATCATAACAATAATATGTAGCATTTATAGGTTTTACTTATATTTGTAGAATCCCTCTCCCGATTTGCGACCAGTCTTTCCAGCGTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>498 307 195</canonical_bands>
                <polymorphic_bands>805 195</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATGATAAAAACTTGTGCTGAC</pcr_primer_p1>
		<pcr_primer_p2>TAGTGACTTTCAGGAAGAAATGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAATGATAAAAACTTGTGCTGACAAAAAACACATTTGAACGTCGCGCTATGTTATTGTGTTATTGGGGCACACTTGCTGCATGAACTTCTTTTCCAAAAAGCCACGTTTCACTGATTTCTTGAGCTTCTCGCAATTTGCAAAGCTGACGAATATAAGATTTTTAATTACCGGAAGATGGAGATGCCTCCAGAGAGGGCAACCAAGCAGAGGGATCGCCAAAAAACATGACATTTCTTCCTGAAAGTCACTA</canonical_amplicon>
		<polymorphic_amplicon>GAATGATAAAAACTTGTGCTGACAAAAAACACATTTGAACGTCGCGCTATGTTATTGTGTTATTGGGRCACACTTGCTGCATGAACTTCTTTTCCAAAAAGCCACGTTTCACTGATTTCTTGAGCTTCTCGCAATTTGCAAAGCTGACGAATATAAGATTTTTAATTACCGGAAGATGGAGATGCCTCCAGAGAGGGCAACCAAGCAGAGGGATCGCCAAAAAACATGACATTTCTTCCTGAAAGTCACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21193</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>125279</contig_pos>
        <strand></strand>
        <context>GCCTCATGGT[A/T]AACATATTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGACACACCTATTATTACACGATTTCGATACAAATTCACTGCCTCATGGT</left_flank>
        <right_flank>AACATATTAGTTAGAATTTCCCGTGGAGGATGGTCAACCTTGATATCCTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCTTCATATAACCGCAGATATCCATATTAAAAGGCGTCAAATTACTTATTATGATGCATTGCTCGTAATGTCGTTGACACAGTCCTGTCGATTTCCTCATTTCTTTCCGCTACCATCTACGTTCATCGATACGTTCCAGAAACAGAGACAAACTGTGTTGACTGTTTTCAAGTTTAAAACCAACTCTCTTACATTCTTATACTTTACTTTTTTGCTCTACCTCCAATGTTCTAACTTAATCACAATTAGCTTTTCCAGACAACAAAACCACCGAAAACATGGATTCCGATAATGATGATGTTCAGCTGAACGACTCGACAAAGAAAGGAAAATTTCCGACAAAGGAAGATCGAGAGGTGGAGATAGTAGGAAGATTCCTCAAGAAGAAAGAGCCTCATTTGGAAGGATTCGTTTGTTACCTTAGAAACTGCTCATTCGGTAGGGCCACGACACACCTATTATTACACGATTTCGATACAAATTCACTGCCTCATGGTAAACATATTAGTTAGAATTTCCCGTGGAGGATGGTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTTTCACGATAAAAGTGTCCATAAAAAAAGTTTTT</canonical>
            <polymorphic>TCTCTTCATATAACCGCAGATATCCATATTAAAAGGCGTCAAATTACTTATTATGATGCATTGCTCGTAATGTCGTTGACACAGTCCTGTCGATTTCCTCATTTCTTTCCGCTACCATCTACGTTCATCGATACGTTCCAGAAACAGAGACAAACTGTGTTGACTGTTTTCAAGTTTAAAACCAACTCTCTTACATTCTTATACTTTACTTTTTTGCTCTACCTCCAATGTTCTAACTTAATCACAATTAGCTTTTCCAGACAACAAAACCACCGAAAACATGGATTCCGATAATGATGATGTTCAGCTGAACGACTCGACAAAGAAAGGAAAATTTCCGACAAAGGAAGATCGAGAGGTGGAGATAGTAGGAAGATTCCTCAAGAAGAAAGAGCCTCATTTGGAAGGATTCGTTTGTTACCTTAGAAACTGCTCATTCGGTAGGGCCACGACACACCTATTATTACACGATTTCGATACAAATTCACTGCCTCATGGTWAACATATTAGTTAGAATTTCCCGTGGAGGATGGTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTTTCACGATAAAAGTGTCCATAAAAAAAGTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACGACACACCTATTATTACAC</pcr_primer_p1>
		<pcr_primer_p2>AAAGTTGTTACTTGACAGAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>522</pcr_amplicon_size>
		<canonical_amplicon>CCACGACACACCTATTATTACACGATTTCGATACAAATTCACTGCCTCATGGTAAACATATTAGTTAGAATTTCCCGTGGAGGATGGTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTT</canonical_amplicon>
		<polymorphic_amplicon>CCACGACACACCTATTATTACACGATTTCGATACAAATTCACTGCCTCATGGTWAACATATTAGTTAGAATTTCCCGTGGAGGATGGTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21194</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>125204</contig_pos>
        <strand></strand>
        <context>TTGTTACCTT[A/G]GAAACTGCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTCCTCAAGAAGAAAGAGCCTCATTTGGAAGGATTCGTTTGTTACCTT</left_flank>
        <right_flank>GAAACTGCTCATTCGGTAGGGCCACGACACACCTATTATTACACGATTTC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCATTGGTGTGAGGAACACCTGAATTAGGTCGACAACTGCTCATCACTCCGGAGCGTTTCTCTCCGTCTCCCACTCTCTTCATATAACCGCAGATATCCATATTAAAAGGCGTCAAATTACTTATTATGATGCATTGCTCGTAATGTCGTTGACACAGTCCTGTCGATTTCCTCATTTCTTTCCGCTACCATCTACGTTCATCGATACGTTCCAGAAACAGAGACAAACTGTGTTGACTGTTTTCAAGTTTAAAACCAACTCTCTTACATTCTTATACTTTACTTTTTTGCTCTACCTCCAATGTTCTAACTTAATCACAATTAGCTTTTCCAGACAACAAAACCACCGAAAACATGGATTCCGATAATGATGATGTTCAGCTGAACGACTCGACAAAGAAAGGAAAATTTCCGACAAAGGAAGATCGAGAGGTGGAGATAGTAGGAAGATTCCTCAAGAAGAAAGAGCCTCATTTGGAAGGATTCGTTTGTTACCTTAGAAACTGCTCATTCGGTAGGGCCACGACACACCTATTATTACACGATTTCGATACAAATTCACTGCCTCATGGTAAACATATTAGTTAGAATTTCCCGTGGAGGATGGTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGG</canonical>
            <polymorphic>CCCATTGGTGTGAGGAACACCTGAATTAGGTCGACAACTGCTCATCACTCCGGAGCGTTTCTCTCCGTCTCCCACTCTCTTCATATAACCGCAGATATCCATATTAAAAGGCGTCAAATTACTTATTATGATGCATTGCTCGTAATGTCGTTGACACAGTCCTGTCGATTTCCTCATTTCTTTCCGCTACCATCTACGTTCATCGATACGTTCCAGAAACAGAGACAAACTGTGTTGACTGTTTTCAAGTTTAAAACCAACTCTCTTACATTCTTATACTTTACTTTTTTGCTCTACCTCCAATGTTCTAACTTAATCACAATTAGCTTTTCCAGACAACAAAACCACCGAAAACATGGATTCCGATAATGATGATGTTCAGCTGAACGACTCGACAAAGAAAGGAAAATTTCCGACAAAGGAAGATCGAGAGGTGGAGATAGTAGGAAGATTCCTCAAGAAGAAAGAGCCTCATTTGGAAGGATTCGTTTGTTACCTTRGAAACTGCTCATTCGGTAGGGCCACGACACACCTATTATTACACGATTTCGATACAAATTCACTGCCTCATGGTAAACATATTAGTTAGAATTTCCCGTGGAGGATGGTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>497 442 61</canonical_bands>
                <polymorphic_bands>939 61</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCACAATTAGCTTTTCCAGAC</pcr_primer_p1>
		<pcr_primer_p2>AGTGAATTTGTATCGAAATCGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCACAATTAGCTTTTCCAGACAACAAAACCACCGAAAACATGGATTCCGATAATGATGATGTTCAGCTGAACGACTCGACAAAGAAAGGAAAATTTCCGACAAAGGAAGATCGAGAGGTGGAGATAGTAGGAAGATTCCTCAAGAAGAAAGAGCCTCATTTGGAAGGATTCGTTTGTTACCTTAGAAACTGCTCATTCGGTAGGGCCACGACACACCTATTATTACACGATTTCGATACAAATTCACT</canonical_amplicon>
		<polymorphic_amplicon>ATCACAATTAGCTTTTCCAGACAACAAAACCACCGAAAACATGGATTCCGATAATGATGATGTTCAGCTGAACGACTCGACAAAGAAAGGAAAATTTCCGACAAAGGAAGATCGAGAGGTGGAGATAGTAGGAAGATTCCTCAAGAAGAAAGAGCCTCATTTGGAAGGATTCGTTTGTTACCTTRGAAACTGCTCATTCGGTAGGGCCACGACACACCTATTATTACACGATTTCGATACAAATTCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21195</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>140284</contig_pos>
        <strand>+</strand>
        <context>CTTTGTTAGG[A/G]GTTTTATACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGGGATGGAGATCTGAGAATGTTAAATTGAATAAGAATACTTTGTTAGG</left_flank>
        <right_flank>GTTTTATACCTGTAAGTGGTTCTCTTCTCCACAAATTCTCTCTCGTATCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCGTGACTTCAGAATAAACGGGCTCGTATCCCTTGTAACTTGCCGAGACGTGACCCTCGACTCGTGGTGGTGGAAGTTCTGGGGTGTCTCGTTTCTTGTCATATCGCTCGTAGACGGTAGAATATTCTGGGGATGTTGGTCGTTGCTGTTGAATTGAAGAGTAGTATCCAGCAGATGGAGGACGATCTTTCTTATCCAACGTATCTCCGAAATATCTTCGTTCTGGGGTAGAACGAGCATCTCCATACTGAGCAACAGTGTATCCAAGAGTGTTTTTGTTGTCTCTTTCCAATTGTGCTCTTCGCTGCTCACGCTCCTCCTCATCAGCCAATGGATCCATCCTCTCCACCTTCTTCACTCGCTCGTTAGTGTCGAATGGTGTGTCCATTCCTTGAATTGGTGATAGTGGCGTCTCACTGATATGAGTGGCAACACTAGATGTTCTAGCAGGGGATGGAGATCTGAGAATGTTAAATTGAATAAGAATACTTTGTTAGGAGTTTTATACCTGTAAGTGGTTCTCTTCTCCACAAATTCTCTCTCGTATCCTGGAGGAGATGGAGACCGGGCGATGCGCTCAGCGAATTCTTGAGTTCTGAAATACAATTTTTATGAATTATGTCTCTCATTTTCTAATGCTTTCAAATAAATGATAGATTGTTTAGCAAGCGATAGAAAAGGACAATTACAATACCTCACGCTTCCGTACGATGTGTTCGAGGCGCCTCTCGGAGGTGATGGAGATCGGTGAGTAGTGCGAGTGATAGTTTCTGTGATTTGGGTGGATCTGAAAGATTGGACTTGTTAAGGAAGATAGGATAGTTTTGGCAGTATCTACTGAATAAAATAAATTGCGTGGAAATCAAATTGATTGTCAACACCAGTTAGCAAAAAGGATAGAAAAAAACGAGGGGGGCAAAAATGATGATTGGAAGACACACATGCATACATAGACAGACTTGAAAACGCCTAATTTGTTGTGTGTGTGTGTGTGTCACA</canonical>
            <polymorphic>GTCGTGACTTCAGAATAAACGGGCTCGTATCCCTTGTAACTTGCCGAGACGTGACCCTCGACTCGTGGTGGTGGAAGTTCTGGGGTGTCTCGTTTCTTGTCATATCGCTCGTAGACGGTAGAATATTCTGGGGATGTTGGTCGTTGCTGTTGAATTGAAGAGTAGTATCCAGCAGATGGAGGACGATCTTTCTTATCCAACGTATCTCCGAAATATCTTCGTTCTGGGGTAGAACGAGCATCTCCATACTGAGCAACAGTGTATCCAAGAGTGTTTTTGTTGTCTCTTTCCAATTGTGCTCTTCGCTGCTCACGCTCCTCCTCATCAGCCAATGGATCCATCCTCTCCACCTTCTTCACTCGCTCGTTAGTGTCGAATGGTGTGTCCATTCCTTGAATTGGTGATAGTGGCGTCTCACTGATATGAGTGGCAACACTAGATGTTCTAGCAGGGGATGGAGATCTGAGAATGTTAAATTGAATAAGAATACTTTGTTAGGRGTTTTATACCTGTAAGTGGTTCTCTTCTCCACAAATTCTCTCTCGTATCCTGGAGGAGATGGAGACCGGGCGATGCGCTCAGCGAATTCTTGAGTTCTGAAATACAATTTTTATGAATTATGTCTCTCATTTTCTAATGCTTTCAAATAAATGATAGATTGTTTAGCAAGCGATAGAAAAGGACAATTACAATACCTCACGCTTCCGTACGATGTGTTCGAGGCGCCTCTCGGAGGTGATGGAGATCGGTGAGTAGTGCGAGTGATAGTTTCTGTGATTTGGGTGGATCTGAAAGATTGGACTTGTTAAGGAAGATAGGATAGTTTTGGCAGTATCTACTGAATAAAATAAATTGCGTGGAAATCAAATTGATTGTCAACACCAGTTAGCAAAAAGGATAGAAAAAAACGAGGGGGGCAAAAATGATGATTGGAAGACACACATGCATACATAGACAGACTTGAAAACGCCTAATTTGTTGTGTGTGTGTGTGTGTCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATATGAGTGGCAACACTAGA</pcr_primer_p1>
		<pcr_primer_p2>TGCTAAACAATCTATCATTTATTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGATATGAGTGGCAACACTAGATGTTCTAGCAGGGGATGGAGATCTGAGAATGTTAAATTGAATAAGAATACTTTGTTAGGAGTTTTATACCTGTAAGTGGTTCTCTTCTCCACAAATTCTCTCTCGTATCCTGGAGGAGATGGAGACCGGGCGATGCGCTCAGCGAATTCTTGAGTTCTGAAATACAATTTTTATGAATTATGTCTCTCATTTTCTAATGCTTTCAAATAAATGATAGATTGTTTAGCA</canonical_amplicon>
		<polymorphic_amplicon>TGATATGAGTGGCAACACTAGATGTTCTAGCAGGGGATGGAGATCTGAGAATGTTAAATTGAATAAGAATACTTTGTTAGGRGTTTTATACCTGTAAGTGGTTCTCTTCTCCACAAATTCTCTCTCGTATCCTGGAGGAGATGGAGACCGGGCGATGCGCTCAGCGAATTCTTGAGTTCTGAAATACAATTTTTATGAATTATGTCTCTCATTTTCTAATGCTTTCAAATAAATGATAGATTGTTTAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21196</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>149537</contig_pos>
        <strand>+</strand>
        <context>GAGACGATGG[A/C]GAGAAGAAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGACAAAACGGAGAGTTTTCGGGGCCATCTTTCGCTCGTCGAGACGATGG</left_flank>
        <right_flank>GAGAAGAAGGACACCCATGAGGGGGGGGGGGGGGAGGAGGAAGAGATATT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGAAGCCTAAAATCTAATGAAAATAAAATCAACAAAATTCAAATTCTTAAATAATGTAAAAAGTTTCAACTCACTTTCAAAAGAGTGATCTGTGTTCAACTTGGACGGTACAATCCGGCGCGGCATGTTTCGGACGTGCACCAAGTCTGGTGCACCGACATTGCACGCAAATGGTGCATCGGGTACTCGTTGATCTGCCAGCATCACATCCACACTGTGTTCGCCTGGAAAACACAACGTAATGAAGTACGAATTTACACCTAATATCATTTTGAATGAATGGCACTGACAAAAAACACTCGAGAGACAAAAAGAGACAAGGGGTGGTCTAATCAAAATCATTAAATTGTTGTGTGCGTGTCTTGTCATCAACAAATAATCGATGATCGGCAGAAGGAACAACAGAAGACGTCGGAAGAAGAAGAAGAAGAACCGTAGGTGAAAAAGAGACAAAACGGAGAGTTTTCGGGGCCATCTTTCGCTCGTCGAGACGATGGCGAGAAGAAGGACACCCATGAGGGGGGGGGGGGGGAGGAGGAAGAGATATTGACCGATAACATTAGGCGTAATGTCGATTACCTCCTCCTCCTCCCGACCATCACCACATATACACAACACCGGTGTGCGGTTTCTCTCTGTATCTCTCTCTCTCTCAATTGCCTTAAACCTACTGTCTTGTACATTTATATGAATGGAATGAAACTTATCAGTGACTAAGTTTTTTGTTGTTGGGACATTACTTGGAATGGGGGTGGAAGTAGAAAAAAATACTGGCAAGACCCTCCATGAAGAATGGCATGAGCCCTTATCAGTTTAAGCTTCTTTCCGGAAGGTTTTTTTTTGTTAAACTGGGGATTTCTTTGGCGCCAGAGAGTAAAATTGTTCGGCAAATAAACAAAAATGAAACCTTGGCAAAACAACAACCCAAAATCAAGTGAACAGGTTTACAATCACTCCCACCACAATACTTCAAATTATATAAGTATATATTTTGTAAA</canonical>
            <polymorphic>TGAGAAGCCTAAAATCTAATGAAAATAAAATCAACAAAATTCAAATTCTTAAATAATGTAAAAAGTTTCAACTCACTTTCAAAAGAGTGATCTGTGTTCAACTTGGACGGTACAATCCGGCGCGGCATGTTTCGGACGTGCACCAAGTCTGGTGCACCGACATTGCACGCAAATGGTGCATCGGGTACTCGTTGATCTGCCAGCATCACATCCACACTGTGTTCGCCTGGAAAACACAACGTAATGAAGTACGAATTTACACCTAATATCATTTTGAATGAATGGCACTGACAAAAAACACTCGAGAGACAAAAAGAGACAAGGGGTGGTCTAATCAAAATCATTAAATTGTTGTGTGCGTGTCTTGTCATCAACAAATAATCGATGATCGGCAGAAGGAACAACAGAAGACGTCGGAAGAAGAAGAAGAAGAACCGTAGGTGAAAAAGAGACAAAACGGAGAGTTTTCGGGGCCATCTTTCGCTCGTCGAGACGATGGMGAGAAGAAGGACACCCATGAGGGGGGGGGGGGGGAGGAGGAAGAGATATTGACCGATAACATTAGGCGTAATGTCGATTACCTCCTCCTCCTCCCGACCATCACCACATATACACAACACCGGTGTGCGGTTTCTCTCTGTATCTCTCTCTCTCTCAATTGCCTTAAACCTACTGTCTTGTACATTTATATGAATGGAATGAAACTTATCAGTGACTAAGTTTTTTGTTGTTGGGACATTACTTGGAATGGGGGTGGAAGTAGAAAAAAATACTGGCAAGACCCTCCATGAAGAATGGCATGAGCCCTTATCAGTTTAAGCTTCTTTCCGGAAGGTTTTTTTTTGTTAAACTGGGGATTTCTTTGGCGCCAGAGAGTAAAATTGTTCGGCAAATAAACAAAAATGAAACCTTGGCAAAACAACAACCCAAAATCAAGTGAACAGGTTTACAATCACTCCCACCACAATACTTCAAATTATATAAGTATATATTTTGTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAGAAGAAGAAGAACCGTAG</pcr_primer_p1>
		<pcr_primer_p2>TTAAGGCAATTGAGAGAGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAAGAAGAAGAAGAACCGTAGGTGAAAAAGAGACAAAACGGAGAGTTTTCGGGGCCATCTTTCGCTCGTCGAGACGATGGCGAGAAGAAGGACACCCATGAGGGGGGGGGGGGGGAGGAGGAAGAGATATTGACCGATAACATTAGGCGTAATGTCGATTACCTCCTCCTCCTCCCGACCATCACCACATATACACAACACCGGTGTGCGGTTTCTCTCTGTATCTCTCTCTCTCTCAATTGCCTTAA</canonical_amplicon>
		<polymorphic_amplicon>AAGAAGAAGAAGAAGAACCGTAGGTGAAAAAGAGACAAAACGGAGAGTTTTCGGGGCCATCTTTCGCTCGTCGAGACGATGGMGAGAAGAAGGACACCCATGAGGGGGGGGGGGGGGAGGAGGAAGAGATATTGACCGATAACATTAGGCGTAATGTCGATTACCTCCTCCTCCTCCCGACCATCACCACATATACACAACACCGGTGTGCGGTTTCTCTCTGTATCTCTCTCTCTCTCAATTGCCTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21197</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>149403</contig_pos>
        <strand>+</strand>
        <context>GTGCGTGTCT[G/T]GTCATCAACA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAGACAAGGGGTGGTCTAATCAAAATCATTAAATTGTTGTGTGCGTGTCT</left_flank>
        <right_flank>GTCATCAACAAATAATCGATGATCGGCAGAAGGAACAACAGAAGACGTCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTAATGTTCAAAGCAAAGAGTAGAATTTAGAAAAAATTTTAACTCAATTGTCAATAAACCAGAACATTGAATGGAAAAAGTTTCTTTTTACATAATTATTTGAACTTTGGAATCCTCATAACATGATTATTTGAGAAGCCTAAAATCTAATGAAAATAAAATCAACAAAATTCAAATTCTTAAATAATGTAAAAAGTTTCAACTCACTTTCAAAAGAGTGATCTGTGTTCAACTTGGACGGTACAATCCGGCGCGGCATGTTTCGGACGTGCACCAAGTCTGGTGCACCGACATTGCACGCAAATGGTGCATCGGGTACTCGTTGATCTGCCAGCATCACATCCACACTGTGTTCGCCTGGAAAACACAACGTAATGAAGTACGAATTTACACCTAATATCATTTTGAATGAATGGCACTGACAAAAAACACTCGAGAGACAAAAAGAGACAAGGGGTGGTCTAATCAAAATCATTAAATTGTTGTGTGCGTGTCTTGTCATCAACAAATAATCGATGATCGGCAGAAGGAACAACAGAAGACGTCGGAAGAAGAAGAAGAAGAACCGTAGGTGAAAAAGAGACAAAACGGAGAGTTTTCGGGGCCATCTTTCGCTCGTCGAGACGATGGCGAGAAGAAGGACACCCATGAGGGGGGGGGGGGGGAGGAGGAAGAGATATTGACCGATAACATTAGGCGTAATGTCGATTACCTCCTCCTCCTCCCGACCATCACCACATATACACAACACCGGTGTGCGGTTTCTCTCTGTATCTCTCTCTCTCTCAATTGCCTTAAACCTACTGTCTTGTACATTTATATGAATGGAATGAAACTTATCAGTGACTAAGTTTTTTGTTGTTGGGACATTACTTGGAATGGGGGTGGAAGTAGAAAAAAATACTGGCAAGACCCTCCATGAAGAATGGCATGAGCCCTTATCAGTTTAAGCTTCTTTCCGGAAGGTTTTTTTTTGTTAAACTGGGGATTTCTTTGG</canonical>
            <polymorphic>TTCTTAATGTTCAAAGCAAAGAGTAGAATTTAGAAAAAATTTTAACTCAATTGTCAATAAACCAGAACATTGAATGGAAAAAGTTTCTTTTTACATAATTATTTGAACTTTGGAATCCTCATAACATGATTATTTGAGAAGCCTAAAATCTAATGAAAATAAAATCAACAAAATTCAAATTCTTAAATAATGTAAAAAGTTTCAACTCACTTTCAAAAGAGTGATCTGTGTTCAACTTGGACGGTACAATCCGGCGCGGCATGTTTCGGACGTGCACCAAGTCTGGTGCACCGACATTGCACGCAAATGGTGCATCGGGTACTCGTTGATCTGCCAGCATCACATCCACACTGTGTTCGCCTGGAAAACACAACGTAATGAAGTACGAATTTACACCTAATATCATTTTGAATGAATGGCACTGACAAAAAACACTCGAGAGACAAAAAGAGACAAGGGGTGGTCTAATCAAAATCATTAAATTGTTGTGTGCGTGTCTKGTCATCAACAAATAATCGATGATCGGCAGAAGGAACAACAGAAGACGTCGGAAGAAGAAGAAGAAGAACCGTAGGTGAAAAAGAGACAAAACGGAGAGTTTTCGGGGCCATCTTTCGCTCGTCGAGACGATGGCGAGAAGAAGGACACCCATGAGGGGGGGGGGGGGGAGGAGGAAGAGATATTGACCGATAACATTAGGCGTAATGTCGATTACCTCCTCCTCCTCCCGACCATCACCACATATACACAACACCGGTGTGCGGTTTCTCTCTGTATCTCTCTCTCTCTCAATTGCCTTAAACCTACTGTCTTGTACATTTATATGAATGGAATGAAACTTATCAGTGACTAAGTTTTTTGTTGTTGGGACATTACTTGGAATGGGGGTGGAAGTAGAAAAAAATACTGGCAAGACCCTCCATGAAGAATGGCATGAGCCCTTATCAGTTTAAGCTTCTTTCCGGAAGGTTTTTTTTTGTTAAACTGGGGATTTCTTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAACACAACGTAATGAAGTA</pcr_primer_p1>
		<pcr_primer_p2>GAAAACTCTCCGTTTTGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GGAAAACACAACGTAATGAAGTACGAATTTACACCTAATATCATTTTGAATGAATGGCACTGACAAAAAACACTCGAGAGACAAAAAGAGACAAGGGGTGGTCTAATCAAAATCATTAAATTGTTGTGTGCGTGTCTTGTCATCAACAAATAATCGATGATCGGCAGAAGGAACAACAGAAGACGTCGGAAGAAGAAGAAGAAGAACCGTAGGTGAAAAAGAGACAAAACGGAGAGTTTTC</canonical_amplicon>
		<polymorphic_amplicon>GGAAAACACAACGTAATGAAGTACGAATTTACACCTAATATCATTTTGAATGAATGGCACTGACAAAAAACACTCGAGAGACAAAAAGAGACAAGGGGTGGTCTAATCAAAATCATTAAATTGTTGTGTGCGTGTCTKGTCATCAACAAATAATCGATGATCGGCAGAAGGAACAACAGAAGACGTCGGAAGAAGAAGAAGAAGAACCGTAGGTGAAAAAGAGACAAAACGGAGAGTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21198</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>149103</contig_pos>
        <strand>+</strand>
        <context>ATGTAAAAAS[C/T]TTCAACTCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAATGAAAATAAAATCAACAAAATTCAAATTCTTAAATAATGTAAAAAG</left_flank>
        <right_flank>TTCAACTCACTTTCAAAAGAGTGATCTGTGTTCAACTTGGACGGTACAAT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATCTTAGAATCTCAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCATAATGTCAAAATTTCAGAATCAGAATCTTAGATTCTCAGAATCTCAGAATGTCAAAATCTCAGAATTTCAAAATCTCAGCATGTCAAAATCTCAGAATCTCCGAGATTTCTTAATGTTCAAAGCAAAGAGTAGAATTTAGAAAAAATTTTAACTCAATTGTCAATAAACCAGAACATTGAATGGAAAAAGTTTCTTTTTACATAATTATTTGAACTTTGGAATCCTCATAACATGATTATTTGAGAAGCCTAAAATCTAATGAAAATAAAATCAACAAAATTCAAATTCTTAAATAATGTAAAAAGTTTCAACTCACTTTCAAAAGAGTGATCTGTGTTCAACTTGGACGGTACAATCCGGCGCGGCATGTTTCGGACGTGCACCAAGTCTGGTGCACCGACATTGCACGCAAATGGTGCATCGGGTACTCGTTGATCTGCCAGCATCACATCCACACTGTGTTCGCCTGGAAAACACAACGTAATGAAGTACGAATTTACACCTAATATCATTTTGAATGAATGGCACTGACAAAAAACACTCGAGAGACAAAAAGAGACAAGGGGTGGTCTAATCAAAATCATTAAATTGTTGTGTGCGTGTCTTGTCATCAACAAATAATCGATGATCGGCAGAAGGAACAACAGAAGACGTCGGAAGAAGAAGAAGAAGAACCGTAGGTGAAAAAGAGACAAAACGGAGAGTTTTCGGGGCCATCTTTCGCTCGTCGAGACGATGGCGAGAAGAAGGACACCCATGAGGGGGGGGGGGGGGAGGAGGAAGAGATATTGACCGATAACATTAGG</canonical>
            <polymorphic>AGAATCTTAGAATCTCAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCATAATGTCAAAATTTCAGAATCAGAATCTTAGATTCTCAGAATCTCAGAATGTCAAAATCTCAGAATTTCAAAATCTCAGCATGTCAAAATCTCAGAATCTCCGAGATTTCTTAATGTTCAAAGCAAAGAGTAGAATTTAGAAAAAATTTTAACTCAATTGTCAATAAACCAGAACATTGAATGGAAAAAGTTTCTTTTTACATAATTATTTGAACTTTGGAATCCTCATAACATGATTATTTGAGAAGCCTAAAATCTAATGAAAATAAAATCAACAAAATTCAAATTCTTAAATAATGTAAAAAGYTTCAACTCACTTTCAAAAGAGTGATCTGTGTTCAACTTGGACGGTACAATCCGGCGCGGCATGTTTCGGACGTGCACCAAGTCTGGTGCACCGACATTGCACGCAAATGGTGCATCGGGTACTCGTTGATCTGCCAGCATCACATCCACACTGTGTTCGCCTGGAAAACACAACGTAATGAAGTACGAATTTACACCTAATATCATTTTGAATGAATGGCACTGACAAAAAACACTCGAGAGACAAAAAGAGACAAGGGGTGGTCTAATCAAAATCATTAAATTGTTGTGTGCGTGTCTTGTCATCAACAAATAATCGATGATCGGCAGAAGGAACAACAGAAGACGTCGGAAGAAGAAGAAGAAGAACCGTAGGTGAAAAAGAGACAAAACGGAGAGTTTTCGGGGCCATCTTTCGCTCGTCGAGACGATGGCGAGAAGAAGGACACCCATGAGGGGGGGGGGGGGGAGGAGGAAGAGATATTGACCGATAACATTAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCCTAAAATCTAATGAAAATAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTCGTACTTCATTACGTTGTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGCCTAAAATCTAATGAAAATAAAATCAACAAAATTCAAATTCTTAAATAATGTAAAAAGTTTCAACTCACTTTCAAAAGAGTGATCTGTGTTCAACTTGGACGGTACAATCCGGCGCGGCATGTTTCGGACGTGCACCAAGTCTGGTGCACCGACATTGCACGCAAATGGTGCATCGGGTACTCGTTGATCTGCCAGCATCACATCCACACTGTGTTCGCCTGGAAAACACAACGTAATGAAGTACGAAT</canonical_amplicon>
		<polymorphic_amplicon>AGCCTAAAATCTAATGAAAATAAAATCAACAAAATTCAAATTCTTAAATAATGTAAAAAGYTTCAACTCACTTTCAAAAGAGTGATCTGTGTTCAACTTGGACGGTACAATCCGGCGCGGCATGTTTCGGACGTGCACCAAGTCTGGTGCACCGACATTGCACGCAAATGGTGCATCGGGTACTCGTTGATCTGCCAGCATCACATCCACACTGTGTTCGCCTGGAAAACACAACGTAATGAAGTACGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21199</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>149102</contig_pos>
        <strand></strand>
        <context>AATGTAAAAA[G/C]YTTCAACTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TCTAATGAAAATAAAATCAACAAAATTCAAATTCTTAAATAATGTAAAAA</left_flank>
        <right_flank>TTTCAACTCACTTTCAAAAGAGTGATCTGTGTTCAACTTGGACGGTACAA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAATCTTAGAATCTCAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCATAATGTCAAAATTTCAGAATCAGAATCTTAGATTCTCAGAATCTCAGAATGTCAAAATCTCAGAATTTCAAAATCTCAGCATGTCAAAATCTCAGAATCTCCGAGATTTCTTAATGTTCAAAGCAAAGAGTAGAATTTAGAAAAAATTTTAACTCAATTGTCAATAAACCAGAACATTGAATGGAAAAAGTTTCTTTTTACATAATTATTTGAACTTTGGAATCCTCATAACATGATTATTTGAGAAGCCTAAAATCTAATGAAAATAAAATCAACAAAATTCAAATTCTTAAATAATGTAAAAAGTTTCAACTCACTTTCAAAAGAGTGATCTGTGTTCAACTTGGACGGTACAATCCGGCGCGGCATGTTTCGGACGTGCACCAAGTCTGGTGCACCGACATTGCACGCAAATGGTGCATCGGGTACTCGTTGATCTGCCAGCATCACATCCACACTGTGTTCGCCTGGAAAACACAACGTAATGAAGTACGAATTTACACCTAATATCATTTTGAATGAATGGCACTGACAAAAAACACTCGAGAGACAAAAAGAGACAAGGGGTGGTCTAATCAAAATCATTAAATTGTTGTGTGCGTGTCTTGTCATCAACAAATAATCGATGATCGGCAGAAGGAACAACAGAAGACGTCGGAAGAAGAAGAAGAAGAACCGTAGGTGAAAAAGAGACAAAACGGAGAGTTTTCGGGGCCATCTTTCGCTCGTCGAGACGATGGCGAGAAGAAGGACACCCATGAGGGGGGGGGGGGGGAGGAGGAAGAGATATTGACCGATAACATTAG</canonical>
            <polymorphic>CAGAATCTTAGAATCTCAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCATAATGTCAAAATTTCAGAATCAGAATCTTAGATTCTCAGAATCTCAGAATGTCAAAATCTCAGAATTTCAAAATCTCAGCATGTCAAAATCTCAGAATCTCCGAGATTTCTTAATGTTCAAAGCAAAGAGTAGAATTTAGAAAAAATTTTAACTCAATTGTCAATAAACCAGAACATTGAATGGAAAAAGTTTCTTTTTACATAATTATTTGAACTTTGGAATCCTCATAACATGATTATTTGAGAAGCCTAAAATCTAATGAAAATAAAATCAACAAAATTCAAATTCTTAAATAATGTAAAAASTTTCAACTCACTTTCAAAAGAGTGATCTGTGTTCAACTTGGACGGTACAATCCGGCGCGGCATGTTTCGGACGTGCACCAAGTCTGGTGCACCGACATTGCACGCAAATGGTGCATCGGGTACTCGTTGATCTGCCAGCATCACATCCACACTGTGTTCGCCTGGAAAACACAACGTAATGAAGTACGAATTTACACCTAATATCATTTTGAATGAATGGCACTGACAAAAAACACTCGAGAGACAAAAAGAGACAAGGGGTGGTCTAATCAAAATCATTAAATTGTTGTGTGCGTGTCTTGTCATCAACAAATAATCGATGATCGGCAGAAGGAACAACAGAAGACGTCGGAAGAAGAAGAAGAAGAACCGTAGGTGAAAAAGAGACAAAACGGAGAGTTTTCGGGGCCATCTTTCGCTCGTCGAGACGATGGCGAGAAGAAGGACACCCATGAGGGGGGGGGGGGGGAGGAGGAAGAGATATTGACCGATAACATTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCCTAAAATCTAATGAAAATAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTCGTACTTCATTACGTTGTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGCCTAAAATCTAATGAAAATAAAATCAACAAAATTCAAATTCTTAAATAATGTAAAAAGTTTCAACTCACTTTCAAAAGAGTGATCTGTGTTCAACTTGGACGGTACAATCCGGCGCGGCATGTTTCGGACGTGCACCAAGTCTGGTGCACCGACATTGCACGCAAATGGTGCATCGGGTACTCGTTGATCTGCCAGCATCACATCCACACTGTGTTCGCCTGGAAAACACAACGTAATGAAGTACGAAT</canonical_amplicon>
		<polymorphic_amplicon>AGCCTAAAATCTAATGAAAATAAAATCAACAAAATTCAAATTCTTAAATAATGTAAAAASTTTCAACTCACTTTCAAAAGAGTGATCTGTGTTCAACTTGGACGGTACAATCCGGCGCGGCATGTTTCGGACGTGCACCAAGTCTGGTGCACCGACATTGCACGCAAATGGTGCATCGGGTACTCGTTGATCTGCCAGCATCACATCCACACTGTGTTCGCCTGGAAAACACAACGTAATGAAGTACGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21200</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>200714</contig_pos>
        <strand>+</strand>
        <context>GGCTTCCATT[C/T]GATGCTGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCGCCGATGCAAGGACCGCCGAAGGCACCGACGTTTTCCGGCTTCCATT</left_flank>
        <right_flank>GATGCTGAAATGTGATATTTTGACACTTGGGGCTTTTCAAAAAACAAATA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCGCCTCTTTCCATTCTTTTCCAACAAGTAGTATTTTAGTTTGTTTTCGCGGTTTTCTTTTTTTTTTTCTCAAACTGCTAGTTCTGAAAATGGTAAATCTACTGGGATCGTCCGTTTGGAAACAGTAAACAGTGTTAGAGACAAATTCCATGTACCCACAGATTCTTTGAATTGTTGACCAGACTATAATCAGTTTCTGCTTTTTTTCCTCCGTCTCAATTTTCAGATCAAATTACCTCAGAGAATGCTCAAAGATAACACATTTGTTCCATTAAATTCTACACATCACACTTCAGTTCAAACTACTCATTTTAGATTTTTTTGTCATCAACATAAAATTTGAAGTTCACGTTCCCAGTGTTCCACCTGATCCCCCTGAGCCAGTAAAACAGTCAAAAACTCACACAGTTGTGTGCCAAGTCCGTCACCAATAGCAGCAGACATCAACGGCGCCGATGCAAGGACCGCCGAAGGCACCGACGTTTTCCGGCTTCCATTTGATGCTGAAATGTGATATTTTGACACTTGGGGCTTTTCAAAAAACAAATAATGGCATGGGGAGGGCAATAAAGCAAAAATTGTCTGAAATTCGTTTTTGAAAGTATAAGGAAATGTAGGACAAGAGGTTTTTTTTGGATTACTGTATATCTAGTTTAGGAGACTACAGAGAAATAACCCTTTATTAGAGAAAAAGTGGTTCTGAAAGTGCAACAATACAAATGCTCTTTTTTTTACAAAATATAATTTTAATATTCTTATCTACAGTATTCTAGAAAAAATCAGATTATGAATTTTTCTGTGGAAGATAGTCAACCTTAGAATCCTGAAAAAAGTATTCCAGAATTTTTCGAACTTCCTGAAATTCAGAGTATACTAAACAGAGTCAGATCTTCATTTTCATTAATCTTAGAATTTTGGGTGCTTTTTGGTTATGAAGAGCATATATAATCAGAAAGGAAACTGGAAAAGAAATTGTCAATTATGAAAATGAAGTTCTAC</canonical>
            <polymorphic>TGCGCCTCTTTCCATTCTTTTCCAACAAGTAGTATTTTAGTTTGTTTTCGCGGTTTTCTTTTTTTTTTTCTCAAACTGCTAGTTCTGAAAATGGTAAATCTACTGGGATCGTCCGTTTGGAAACAGTAAACAGTGTTAGAGACAAATTCCATGTACCCACAGATTCTTTGAATTGTTGACCAGACTATAATCAGTTTCTGCTTTTTTTCCTCCGTCTCAATTTTCAGATCAAATTACCTCAGAGAATGCTCAAAGATAACACATTTGTTCCATTAAATTCTACACATCACACTTCAGTTCAAACTACTCATTTTAGATTTTTTTGTCATCAACATAAAATTTGAAGTTCACGTTCCCAGTGTTCCACCTGATCCCCCTGAGCCAGTAAAACAGTCAAAAACTCACACAGTTGTGTGCCAAGTCCGTCACCAATAGCAGCAGACATCAACGGCGCCGATGCAAGGACCGCCGAAGGCACCGACGTTTTCCGGCTTCCATTYGATGCTGAAATGTGATATTTTGACACTTGGGGCTTTTCAAAAAACAAATAATGGCATGGGGAGGGCAATAAAGCAAAAATTGTCTGAAATTCGTTTTTGAAAGTATAAGGAAATGTAGGACAAGAGGTTTTTTTTGGATTACTGTATATCTAGTTTAGGAGACTACAGAGAAATAACCCTTTATTAGAGAAAAAGTGGTTCTGAAAGTGCAACAATACAAATGCTCTTTTTTTTACAAAATATAATTTTAATATTCTTATCTACAGTATTCTAGAAAAAATCAGATTATGAATTTTTCTGTGGAAGATAGTCAACCTTAGAATCCTGAAAAAAGTATTCCAGAATTTTTCGAACTTCCTGAAATTCAGAGTATACTAAACAGAGTCAGATCTTCATTTTCATTAATCTTAGAATTTTGGGTGCTTTTTGGTTATGAAGAGCATATATAATCAGAAAGGAAACTGGAAAAGAAATTGTCAATTATGAAAATGAAGTTCTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAACAGTCAAAAACTCACACA</pcr_primer_p1>
		<pcr_primer_p2>AAAAACCTCTTGTCCTACATTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TAAAACAGTCAAAAACTCACACAGTTGTGTGCCAAGTCCGTCACCAATAGCAGCAGACATCAACGGCGCCGATGCAAGGACCGCCGAAGGCACCGACGTTTTCCGGCTTCCATTTGATGCTGAAATGTGATATTTTGACACTTGGGGCTTTTCAAAAAACAAATAATGGCATGGGGAGGGCAATAAAGCAAAAATTGTCTGAAATTCGTTTTTGAAAGTATAAGGAAATGTAGGACAAGAGGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>TAAAACAGTCAAAAACTCACACAGTTGTGTGCCAAGTCCGTCACCAATAGCAGCAGACATCAACGGCGCCGATGCAAGGACCGCCGAAGGCACCGACGTTTTCCGGCTTCCATTYGATGCTGAAATGTGATATTTTGACACTTGGGGCTTTTCAAAAAACAAATAATGGCATGGGGAGGGCAATAAAGCAAAAATTGTCTGAAATTCGTTTTTGAAAGTATAAGGAAATGTAGGACAAGAGGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21201</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>202929</contig_pos>
        <strand>+</strand>
        <context>TGAAATGTGA[G/T]ATTCTACAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAGATCATTTCTATGATTTCTCAAATGCACCCAGAATGCTGAAATGTGA</left_flank>
        <right_flank>ATTCTACAAAAAAATGGGATGGGTAGAAAAACTGAAGAAAAAAGAGGAAG</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGATGAAATCACATTTAAAATTTGATAGTGCTTAGCAGGAACACACCATAATATCTGGAAAAATGAATGAAGTGCTAGTCTGAATCTCCCATTAGAGCCTAAGGCTTCTAGGAATACGGATAGCCTCATTATGATATGGCACTAAATTCGGAATCTTTAAAAGTTCTAATGATCTTTCTTTAAAGGATCAATTTTGAAAAAATCCTCAAAGACGAAGCCTAATATCCTCGCAAAAAAATGTGGTTTTGCAGACTTTGCAGCACGAATGAAACTACGTTTTTTCTTAAGTGCAAAACGGGAATGAGAAACGCTTTCTCAAGAGGGTTCACTCTTTTTTCTATTCTCACTTGACATTTAATCGGACGATTATTTTTCAGTTTTTCTATTTCTATTCTGTTCCAAAAAAAGAATATTATCACAACGTTTCGAAAATGAGATAGATAGGTAAAAGATCATTTCTATGATTTCTCAAATGCACCCAGAATGCTGAAATGTGAGATTCTACAAAAAAATGGGATGGGTAGAAAAACTGAAGAAAAAAGAGGAAGAAGCTTTGTTAATTGTCACTTTTGACATAAACTCGATTCTACTCCTCACACAGTTACACACTCACAAAACGATGAGATGATAATGATGATAAGTGTTATCGAATTAAAAATTTGTTGCCGACTGTTTATTTGCTTTCACGACACTCTATCTAGACGGACGGTCTGCACAGATTTGGATGACCGGGGTTTTATAACTGCTGGAAAATATGAATTTTACGACTTCCGAAAGAAATTAAAGGTATTCTAGATCAAAAACCAGTTAGGTCACTGATTCTGAAGTTTTGCTGAAAAATAATCTGAAGTATTGTCCTAGTTTGCTCCAAATCCCAAAAAAGACAGATGGGTACTGTGGTTCTATTCTGAGAATTCAAAAAATTCTTTTTAATAAATGACTCGCTAACATACCATTAACACTCTAATAGAACGCCACCCGAACCGTTAAATTTGAGC</canonical>
            <polymorphic>TGTGATGAAATCACATTTAAAATTTGATAGTGCTTAGCAGGAACACACCATAATATCTGGAAAAATGAATGAAGTGCTAGTCTGAATCTCCCATTAGAGCCTAAGGCTTCTAGGAATACGGATAGCCTCATTATGATATGGCACTAAATTCGGAATCTTTAAAAGTTCTAATGATCTTTCTTTAAAGGATCAATTTTGAAAAAATCCTCAAAGACGAAGCCTAATATCCTCGCAAAAAAATGTGGTTTTGCAGACTTTGCAGCACGAATGAAACTACGTTTTTTCTTAAGTGCAAAACGGGAATGAGAAACGCTTTCTCAAGAGGGTTCACTCTTTTTTCTATTCTCACTTGACATTTAATCGGACGATTATTTTTCAGTTTTTCTATTTCTATTCTGTTCCAAAAAAAGAATATTATCACAACGTTTCGAAAATGAGATAGATAGGTAAAAGATCATTTCTATGATTTCTCAAATGCACCCAGAATGCTGAAATGTGAKATTCTACAAAAAAATGGGATGGGTAGAAAAACTGAAGAAAAAAGAGGAAGAAGCTTTGTTAATTGTCACTTTTGACATAAACTCGATTCTACTCCTCACACAGTTACACACTCACAAAACGATGAGATGATAATGATGATAAGTGTTATCGAATTAAAAATTTGTTGCCGACTGTTTATTTGCTTTCACGACACTCTATCTAGACGGACGGTCTGCACAGATTTGGATGACCGGGGTTTTATAACTGCTGGAAAATATGAATTTTACGACTTCCGAAAGAAATTAAAGGTATTCTAGATCAAAAACCAGTTAGGTCACTGATTCTGAAGTTTTGCTGAAAAATAATCTGAAGTATTGTCCTAGTTTGCTCCAAATCCCAAAAAAGACAGATGGGTACTGTGGTTCTATTCTGAGAATTCAAAAAATTCTTTTTAATAAATGACTCGCTAACATACCATTAACACTCTAATAGAACGCCACCCGAACCGTTAAATTTGAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>347 235 121 85 84 69 59</canonical_bands>
                <polymorphic_bands>432 235 121 84 69 59</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>347 235 180 85 84 69</canonical_bands>
                <polymorphic_bands>432 235 180 84 69</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGTTTCGAAAATGAGATAGATA</pcr_primer_p1>
		<pcr_primer_p2>GCAACAAATTTTTAATTCGATAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACGTTTCGAAAATGAGATAGATAGGTAAAAGATCATTTCTATGATTTCTCAAATGCACCCAGAATGCTGAAATGTGAGATTCTACAAAAAAATGGGATGGGTAGAAAAACTGAAGAAAAAAGAGGAAGAAGCTTTGTTAATTGTCACTTTTGACATAAACTCGATTCTACTCCTCACACAGTTACACACTCACAAAACGATGAGATGATAATGATGATAAGTGTTATCGAATTAAAAATTTGTTGC</canonical_amplicon>
		<polymorphic_amplicon>ACGTTTCGAAAATGAGATAGATAGGTAAAAGATCATTTCTATGATTTCTCAAATGCACCCAGAATGCTGAAATGTGAKATTCTACAAAAAAATGGGATGGGTAGAAAAACTGAAGAAAAAAGAGGAAGAAGCTTTGTTAATTGTCACTTTTGACATAAACTCGATTCTACTCCTCACACAGTTACACACTCACAAAACGATGAGATGATAATGATGATAAGTGTTATCGAATTAAAAATTTGTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21202</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>202838</contig_pos>
        <strand>+</strand>
        <context>TTCCAAAAAA[A/G]GAATATTATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCGGACGATTATTTTTCAGTTTTTCTATTTCTATTCTGTTCCAAAAAA</left_flank>
        <right_flank>GAATATTATCACAACGTTTCGAAAATGAGATAGATAGGTAAAAGATCATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGATGTGATTTTATGATTATAGTTCGCTCATCTTCTGTGAGGAGAGTAGTGGAATCAACTATTGTCAACTTCTGATAAGTTAAACAATTGTGATGAAATCACATTTAAAATTTGATAGTGCTTAGCAGGAACACACCATAATATCTGGAAAAATGAATGAAGTGCTAGTCTGAATCTCCCATTAGAGCCTAAGGCTTCTAGGAATACGGATAGCCTCATTATGATATGGCACTAAATTCGGAATCTTTAAAAGTTCTAATGATCTTTCTTTAAAGGATCAATTTTGAAAAAATCCTCAAAGACGAAGCCTAATATCCTCGCAAAAAAATGTGGTTTTGCAGACTTTGCAGCACGAATGAAACTACGTTTTTTCTTAAGTGCAAAACGGGAATGAGAAACGCTTTCTCAAGAGGGTTCACTCTTTTTTCTATTCTCACTTGACATTTAATCGGACGATTATTTTTCAGTTTTTCTATTTCTATTCTGTTCCAAAAAAAGAATATTATCACAACGTTTCGAAAATGAGATAGATAGGTAAAAGATCATTTCTATGATTTCTCAAATGCACCCAGAATGCTGAAATGTGAGATTCTACAAAAAAATGGGATGGGTAGAAAAACTGAAGAAAAAAGAGGAAGAAGCTTTGTTAATTGTCACTTTTGACATAAACTCGATTCTACTCCTCACACAGTTACACACTCACAAAACGATGAGATGATAATGATGATAAGTGTTATCGAATTAAAAATTTGTTGCCGACTGTTTATTTGCTTTCACGACACTCTATCTAGACGGACGGTCTGCACAGATTTGGATGACCGGGGTTTTATAACTGCTGGAAAATATGAATTTTACGACTTCCGAAAGAAATTAAAGGTATTCTAGATCAAAAACCAGTTAGGTCACTGATTCTGAAGTTTTGCTGAAAAATAATCTGAAGTATTGTCCTAGTTTGCTCCAAATCCCAAAAAAGACAGATGGGTACTGTGGTTCTATT</canonical>
            <polymorphic>AAATGATGTGATTTTATGATTATAGTTCGCTCATCTTCTGTGAGGAGAGTAGTGGAATCAACTATTGTCAACTTCTGATAAGTTAAACAATTGTGATGAAATCACATTTAAAATTTGATAGTGCTTAGCAGGAACACACCATAATATCTGGAAAAATGAATGAAGTGCTAGTCTGAATCTCCCATTAGAGCCTAAGGCTTCTAGGAATACGGATAGCCTCATTATGATATGGCACTAAATTCGGAATCTTTAAAAGTTCTAATGATCTTTCTTTAAAGGATCAATTTTGAAAAAATCCTCAAAGACGAAGCCTAATATCCTCGCAAAAAAATGTGGTTTTGCAGACTTTGCAGCACGAATGAAACTACGTTTTTTCTTAAGTGCAAAACGGGAATGAGAAACGCTTTCTCAAGAGGGTTCACTCTTTTTTCTATTCTCACTTGACATTTAATCGGACGATTATTTTTCAGTTTTTCTATTTCTATTCTGTTCCAAAAAARGAATATTATCACAACGTTTCGAAAATGAGATAGATAGGTAAAAGATCATTTCTATGATTTCTCAAATGCACCCAGAATGCTGAAATGTGAGATTCTACAAAAAAATGGGATGGGTAGAAAAACTGAAGAAAAAAGAGGAAGAAGCTTTGTTAATTGTCACTTTTGACATAAACTCGATTCTACTCCTCACACAGTTACACACTCACAAAACGATGAGATGATAATGATGATAAGTGTTATCGAATTAAAAATTTGTTGCCGACTGTTTATTTGCTTTCACGACACTCTATCTAGACGGACGGTCTGCACAGATTTGGATGACCGGGGTTTTATAACTGCTGGAAAATATGAATTTTACGACTTCCGAAAGAAATTAAAGGTATTCTAGATCAAAAACCAGTTAGGTCACTGATTCTGAAGTTTTGCTGAAAAATAATCTGAAGTATTGTCCTAGTTTGCTCCAAATCCCAAAAAAGACAGATGGGTACTGTGGTTCTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCGGACGATTATTTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>TGTAACTGTGTGAGGAGTAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCGGACGATTATTTTTCAGTTTTTCTATTTCTATTCTGTTCCAAAAAAAGAATATTATCACAACGTTTCGAAAATGAGATAGATAGGTAAAAGATCATTTCTATGATTTCTCAAATGCACCCAGAATGCTGAAATGTGAGATTCTACAAAAAAATGGGATGGGTAGAAAAACTGAAGAAAAAAGAGGAAGAAGCTTTGTTAATTGTCACTTTTGACATAAACTCGATTCTACTCCTCACACAGTTACA</canonical_amplicon>
		<polymorphic_amplicon>AATCGGACGATTATTTTTCAGTTTTTCTATTTCTATTCTGTTCCAAAAAARGAATATTATCACAACGTTTCGAAAATGAGATAGATAGGTAAAAGATCATTTCTATGATTTCTCAAATGCACCCAGAATGCTGAAATGTGAGATTCTACAAAAAAATGGGATGGGTAGAAAAACTGAAGAAAAAAGAGGAAGAAGCTTTGTTAATTGTCACTTTTGACATAAACTCGATTCTACTCCTCACACAGTTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21203</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>202679</contig_pos>
        <strand>+</strand>
        <context>ATGTGGTTTT[A/G]CAGACTTTGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAATCCTCAAAGACGAAGCCTAATATCCTCGCAAAAAAATGTGGTTTT</left_flank>
        <right_flank>CAGACTTTGCAGCACGAATGAAACTACGTTTTTTCTTAAGTGCAAAACGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACTGGACTGAGTGTGCTGATAAGTTAAGGCTTTGGGGGGAGAGAAAAAAAAAAGATGGGAGATAACGGTATTAAAGAGACCGAGACTATGAAAGAGCGGAGGCTTTATTCGGGAAGAACACAACTTTTTGCGTGTTGTCAAAATCTGTTTATCAGCAGAAATGATGTGATTTTATGATTATAGTTCGCTCATCTTCTGTGAGGAGAGTAGTGGAATCAACTATTGTCAACTTCTGATAAGTTAAACAATTGTGATGAAATCACATTTAAAATTTGATAGTGCTTAGCAGGAACACACCATAATATCTGGAAAAATGAATGAAGTGCTAGTCTGAATCTCCCATTAGAGCCTAAGGCTTCTAGGAATACGGATAGCCTCATTATGATATGGCACTAAATTCGGAATCTTTAAAAGTTCTAATGATCTTTCTTTAAAGGATCAATTTTGAAAAAATCCTCAAAGACGAAGCCTAATATCCTCGCAAAAAAATGTGGTTTTGCAGACTTTGCAGCACGAATGAAACTACGTTTTTTCTTAAGTGCAAAACGGGAATGAGAAACGCTTTCTCAAGAGGGTTCACTCTTTTTTCTATTCTCACTTGACATTTAATCGGACGATTATTTTTCAGTTTTTCTATTTCTATTCTGTTCCAAAAAAAGAATATTATCACAACGTTTCGAAAATGAGATAGATAGGTAAAAGATCATTTCTATGATTTCTCAAATGCACCCAGAATGCTGAAATGTGAGATTCTACAAAAAAATGGGATGGGTAGAAAAACTGAAGAAAAAAGAGGAAGAAGCTTTGTTAATTGTCACTTTTGACATAAACTCGATTCTACTCCTCACACAGTTACACACTCACAAAACGATGAGATGATAATGATGATAAGTGTTATCGAATTAAAAATTTGTTGCCGACTGTTTATTTGCTTTCACGACACTCTATCTAGACGGACGGTCTGCACAGATTTGGATGACCGGGGTTTTATAACTGCTG</canonical>
            <polymorphic>GACTGGACTGAGTGTGCTGATAAGTTAAGGCTTTGGGGGGAGAGAAAAAAAAAAGATGGGAGATAACGGTATTAAAGAGACCGAGACTATGAAAGAGCGGAGGCTTTATTCGGGAAGAACACAACTTTTTGCGTGTTGTCAAAATCTGTTTATCAGCAGAAATGATGTGATTTTATGATTATAGTTCGCTCATCTTCTGTGAGGAGAGTAGTGGAATCAACTATTGTCAACTTCTGATAAGTTAAACAATTGTGATGAAATCACATTTAAAATTTGATAGTGCTTAGCAGGAACACACCATAATATCTGGAAAAATGAATGAAGTGCTAGTCTGAATCTCCCATTAGAGCCTAAGGCTTCTAGGAATACGGATAGCCTCATTATGATATGGCACTAAATTCGGAATCTTTAAAAGTTCTAATGATCTTTCTTTAAAGGATCAATTTTGAAAAAATCCTCAAAGACGAAGCCTAATATCCTCGCAAAAAAATGTGGTTTTRCAGACTTTGCAGCACGAATGAAACTACGTTTTTTCTTAAGTGCAAAACGGGAATGAGAAACGCTTTCTCAAGAGGGTTCACTCTTTTTTCTATTCTCACTTGACATTTAATCGGACGATTATTTTTCAGTTTTTCTATTTCTATTCTGTTCCAAAAAAAGAATATTATCACAACGTTTCGAAAATGAGATAGATAGGTAAAAGATCATTTCTATGATTTCTCAAATGCACCCAGAATGCTGAAATGTGAGATTCTACAAAAAAATGGGATGGGTAGAAAAACTGAAGAAAAAAGAGGAAGAAGCTTTGTTAATTGTCACTTTTGACATAAACTCGATTCTACTCCTCACACAGTTACACACTCACAAAACGATGAGATGATAATGATGATAAGTGTTATCGAATTAAAAATTTGTTGCCGACTGTTTATTTGCTTTCACGACACTCTATCTAGACGGACGGTCTGCACAGATTTGGATGACCGGGGTTTTATAACTGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCANNNNNTGC</site>
                <isoschizomers>
                    <enzyme>ApaBI</enzyme>
                    <enzyme>BstAPI</enzyme>
                </isoschizomers>
                <canonical_bands>507 493</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 238 185 35 33 9</canonical_bands>
                <polymorphic_bands>509 238 185 35 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTCATTATGATATGGCACTAAA</pcr_primer_p1>
		<pcr_primer_p2>TCCGATTAAATGTCAAGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CCTCATTATGATATGGCACTAAATTCGGAATCTTTAAAAGTTCTAATGATCTTTCTTTAAAGGATCAATTTTGAAAAAATCCTCAAAGACGAAGCCTAATATCCTCGCAAAAAAATGTGGTTTTGCAGACTTTGCAGCACGAATGAAACTACGTTTTTTCTTAAGTGCAAAACGGGAATGAGAAACGCTTTCTCAAGAGGGTTCACTCTTTTTTCTATTCTCACTTGACATTTAATCGGA</canonical_amplicon>
		<polymorphic_amplicon>CCTCATTATGATATGGCACTAAATTCGGAATCTTTAAAAGTTCTAATGATCTTTCTTTAAAGGATCAATTTTGAAAAAATCCTCAAAGACGAAGCCTAATATCCTCGCAAAAAAATGTGGTTTTRCAGACTTTGCAGCACGAATGAAACTACGTTTTTTCTTAAGTGCAAAACGGGAATGAGAAACGCTTTCTCAAGAGGGTTCACTCTTTTTTCTATTCTCACTTGACATTTAATCGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21204</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>202482</contig_pos>
        <strand>+</strand>
        <context>ACACACCATA[A/T]TATCTGGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGATGAAATCACATTTAAAATTTGATAGTGCTTAGCAGGAACACACCATA</left_flank>
        <right_flank>TATCTGGAAAAATGAATGAAGTGCTAGTCTGAATCTCCCATTAGAGCCTA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTGAGGTGAAGTTGCTTCTGTGTCCTATTTTTTATTTTGCAGAATTTTTGTAAACCTTTCAGCTACAAAACATTCGCTACAAAACACATCACGAAAACTTTATAACCTCAGCACTCTGTCCTGCTTGGACTCGGTTCACGTGAAGTTTCACACCTTCAAAATGTGTCAAGCTCATAAATAAAAGAGTTTGTAGCGACTGGACTGAGTGTGCTGATAAGTTAAGGCTTTGGGGGGAGAGAAAAAAAAAAGATGGGAGATAACGGTATTAAAGAGACCGAGACTATGAAAGAGCGGAGGCTTTATTCGGGAAGAACACAACTTTTTGCGTGTTGTCAAAATCTGTTTATCAGCAGAAATGATGTGATTTTATGATTATAGTTCGCTCATCTTCTGTGAGGAGAGTAGTGGAATCAACTATTGTCAACTTCTGATAAGTTAAACAATTGTGATGAAATCACATTTAAAATTTGATAGTGCTTAGCAGGAACACACCATAATATCTGGAAAAATGAATGAAGTGCTAGTCTGAATCTCCCATTAGAGCCTAAGGCTTCTAGGAATACGGATAGCCTCATTATGATATGGCACTAAATTCGGAATCTTTAAAAGTTCTAATGATCTTTCTTTAAAGGATCAATTTTGAAAAAATCCTCAAAGACGAAGCCTAATATCCTCGCAAAAAAATGTGGTTTTGCAGACTTTGCAGCACGAATGAAACTACGTTTTTTCTTAAGTGCAAAACGGGAATGAGAAACGCTTTCTCAAGAGGGTTCACTCTTTTTTCTATTCTCACTTGACATTTAATCGGACGATTATTTTTCAGTTTTTCTATTTCTATTCTGTTCCAAAAAAAGAATATTATCACAACGTTTCGAAAATGAGATAGATAGGTAAAAGATCATTTCTATGATTTCTCAAATGCACCCAGAATGCTGAAATGTGAGATTCTACAAAAAAATGGGATGGGTAGAAAAACTGAAGAAAAAAGAGGAAGAAG</canonical>
            <polymorphic>TTTCTGAGGTGAAGTTGCTTCTGTGTCCTATTTTTTATTTTGCAGAATTTTTGTAAACCTTTCAGCTACAAAACATTCGCTACAAAACACATCACGAAAACTTTATAACCTCAGCACTCTGTCCTGCTTGGACTCGGTTCACGTGAAGTTTCACACCTTCAAAATGTGTCAAGCTCATAAATAAAAGAGTTTGTAGCGACTGGACTGAGTGTGCTGATAAGTTAAGGCTTTGGGGGGAGAGAAAAAAAAAAGATGGGAGATAACGGTATTAAAGAGACCGAGACTATGAAAGAGCGGAGGCTTTATTCGGGAAGAACACAACTTTTTGCGTGTTGTCAAAATCTGTTTATCAGCAGAAATGATGTGATTTTATGATTATAGTTCGCTCATCTTCTGTGAGGAGAGTAGTGGAATCAACTATTGTCAACTTCTGATAAGTTAAACAATTGTGATGAAATCACATTTAAAATTTGATAGTGCTTAGCAGGAACACACCATAWTATCTGGAAAAATGAATGAAGTGCTAGTCTGAATCTCCCATTAGAGCCTAAGGCTTCTAGGAATACGGATAGCCTCATTATGATATGGCACTAAATTCGGAATCTTTAAAAGTTCTAATGATCTTTCTTTAAAGGATCAATTTTGAAAAAATCCTCAAAGACGAAGCCTAATATCCTCGCAAAAAAATGTGGTTTTGCAGACTTTGCAGCACGAATGAAACTACGTTTTTTCTTAAGTGCAAAACGGGAATGAGAAACGCTTTCTCAAGAGGGTTCACTCTTTTTTCTATTCTCACTTGACATTTAATCGGACGATTATTTTTCAGTTTTTCTATTTCTATTCTGTTCCAAAAAAAGAATATTATCACAACGTTTCGAAAATGAGATAGATAGGTAAAAGATCATTTCTATGATTTCTCAAATGCACCCAGAATGCTGAAATGTGAGATTCTACAAAAAAATGGGATGGGTAGAAAAACTGAAGAAAAAAGAGGAAGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATTATAGTTCGCTCATCTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTTTAAAGATTCCGAATTTAGTG</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TGATTATAGTTCGCTCATCTTCTGTGAGGAGAGTAGTGGAATCAACTATTGTCAACTTCTGATAAGTTAAACAATTGTGATGAAATCACATTTAAAATTTGATAGTGCTTAGCAGGAACACACCATAATATCTGGAAAAATGAATGAAGTGCTAGTCTGAATCTCCCATTAGAGCCTAAGGCTTCTAGGAATACGGATAGCCTCATTATGATATGGCACTAAATTCGGAATCTTTAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGATTATAGTTCGCTCATCTTCTGTGAGGAGAGTAGTGGAATCAACTATTGTCAACTTCTGATAAGTTAAACAATTGTGATGAAATCACATTTAAAATTTGATAGTGCTTAGCAGGAACACACCATAWTATCTGGAAAAATGAATGAAGTGCTAGTCTGAATCTCCCATTAGAGCCTAAGGCTTCTAGGAATACGGATAGCCTCATTATGATATGGCACTAAATTCGGAATCTTTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21205</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>228239</contig_pos>
        <strand>+</strand>
        <context>TGGTCATATT[A/T]GAATCTCTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTTTAACTTTGATTGATTTCAAGTCCCCTACACCTTTTGGTCATATT</left_flank>
        <right_flank>GAATCTCTTATACTTTCAATTTGACTTCAATCATCTCCATTATTGTGACA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGAGACGTTCACCTGCTTCTTAGAAGAAAAAACTGGTGCGGTGGTCGCGGTAGCTATTTTTCATTAACGTTTTTCTTTTTTTTTTCACACCCGTTCCTCTAAAACTTACATTCTTCTCAATTTTTACCACAATCTCTCCATTTTCATCACGTCCGTAGGTTCTTCGTTCGGTGTATTGTTTGGAAGACACTTGTCGTTGAGGCTGAACATTATTTTATTGGTTCCTGTTTATGTTACCTCTACGTGCGTTTTTTTTTGGTAGACAAAACCAAGTACAAAATAGTGGAATATTGTTTTCGTGAGAACAAAATGAACCAAAAACAGAGCTATGAAAATATATAAATTCGATAATTCCCTACCTCACTATGTGGAGTCCCATGAATCCGTCGCTCGAATGTCTCGATTGTGTGAGCCTCCTCACTTCCGATTTTCTGAAAAATATTTTTTTATTTTTTAACTTTGATTGATTTCAAGTCCCCTACACCTTTTGGTCATATTTGAATCTCTTATACTTTCAATTTGACTTCAATCATCTCCATTATTGTGACAGATATCAAATATTTTTAAACTATAAAAATGTTAATGAGATTATGGCTAAAATTTTATCAGTTGATAGATTCTTGAAATATCTCATTTCTGAGATGATTGAGGCTCTATTCGACAATTTATGGTACCATAAACTCACTTCAAATCGTCCTCCCTCATAAGGTCTAACGTCCATGGTAACTATTCAAAAATTTCGAAAAAAACAACCGGCAAAAAGTTGAAAGTTCGAGATGCGAGAAAGAATGCGCAAACTGATGATTCAGTATTCCAACCAAAACGAATCTCTGTGTGTTGTGCCCTCCTCCCCACAACTCTGACGATCCGAATCCTCCGAATCGACGATGATATTTCACTAACTCTTTGCTCTACTTTAACATCGCGCCTCGCGTTTTTGAGCAAACAGTCAAACTGAAATATACAGTTGTGCTCTTGCGCTCTCTTTCTTTCGCATCA</canonical>
            <polymorphic>ACGAGACGTTCACCTGCTTCTTAGAAGAAAAAACTGGTGCGGTGGTCGCGGTAGCTATTTTTCATTAACGTTTTTCTTTTTTTTTTCACACCCGTTCCTCTAAAACTTACATTCTTCTCAATTTTTACCACAATCTCTCCATTTTCATCACGTCCGTAGGTTCTTCGTTCGGTGTATTGTTTGGAAGACACTTGTCGTTGAGGCTGAACATTATTTTATTGGTTCCTGTTTATGTTACCTCTACGTGCGTTTTTTTTTGGTAGACAAAACCAAGTACAAAATAGTGGAATATTGTTTTCGTGAGAACAAAATGAACCAAAAACAGAGCTATGAAAATATATAAATTCGATAATTCCCTACCTCACTATGTGGAGTCCCATGAATCCGTCGCTCGAATGTCTCGATTGTGTGAGCCTCCTCACTTCCGATTTTCTGAAAAATATTTTTTTATTTTTTAACTTTGATTGATTTCAAGTCCCCTACACCTTTTGGTCATATTWGAATCTCTTATACTTTCAATTTGACTTCAATCATCTCCATTATTGTGACAGATATCAAATATTTTTAAACTATAAAAATGTTAATGAGATTATGGCTAAAATTTTATCAGTTGATAGATTCTTGAAATATCTCATTTCTGAGATGATTGAGGCTCTATTCGACAATTTATGGTACCATAAACTCACTTCAAATCGTCCTCCCTCATAAGGTCTAACGTCCATGGTAACTATTCAAAAATTTCGAAAAAAACAACCGGCAAAAAGTTGAAAGTTCGAGATGCGAGAAAGAATGCGCAAACTGATGATTCAGTATTCCAACCAAAACGAATCTCTGTGTGTTGTGCCCTCCTCCCCACAACTCTGACGATCCGAATCCTCCGAATCGACGATGATATTTCACTAACTCTTTGCTCTACTTTAACATCGCGCCTCGCGTTTTTGAGCAAACAGTCAAACTGAAATATACAGTTGTGCTCTTGCGCTCTCTTTCTTTCGCATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCTCACTTCCGATTTTCT</pcr_primer_p1>
		<pcr_primer_p2>AATAGAGCCTCAATCATCTCAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTCCTCACTTCCGATTTTCTGAAAAATATTTTTTTATTTTTTAACTTTGATTGATTTCAAGTCCCCTACACCTTTTGGTCATATTTGAATCTCTTATACTTTCAATTTGACTTCAATCATCTCCATTATTGTGACAGATATCAAATATTTTTAAACTATAAAAATGTTAATGAGATTATGGCTAAAATTTTATCAGTTGATAGATTCTTGAAATATCTCATTTCTGAGATGATTGAGGCTCTATT</canonical_amplicon>
		<polymorphic_amplicon>CTCCTCACTTCCGATTTTCTGAAAAATATTTTTTTATTTTTTAACTTTGATTGATTTCAAGTCCCCTACACCTTTTGGTCATATTWGAATCTCTTATACTTTCAATTTGACTTCAATCATCTCCATTATTGTGACAGATATCAAATATTTTTAAACTATAAAAATGTTAATGAGATTATGGCTAAAATTTTATCAGTTGATAGATTCTTGAAATATCTCATTTCTGAGATGATTGAGGCTCTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21206</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>228409</contig_pos>
        <strand>+</strand>
        <context>CGACAATTTA[C/T]GGTACCATAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTGAAATATCTCATTTCTGAGATGATTGAGGCTCTATTCGACAATTTA</left_flank>
        <right_flank>GGTACCATAAACTCACTTCAAATCGTCCTCCCTCATAAGGTCTAACGTCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGTATTGTTTGGAAGACACTTGTCGTTGAGGCTGAACATTATTTTATTGGTTCCTGTTTATGTTACCTCTACGTGCGTTTTTTTTTGGTAGACAAAACCAAGTACAAAATAGTGGAATATTGTTTTCGTGAGAACAAAATGAACCAAAAACAGAGCTATGAAAATATATAAATTCGATAATTCCCTACCTCACTATGTGGAGTCCCATGAATCCGTCGCTCGAATGTCTCGATTGTGTGAGCCTCCTCACTTCCGATTTTCTGAAAAATATTTTTTTATTTTTTAACTTTGATTGATTTCAAGTCCCCTACACCTTTTGGTCATATTTGAATCTCTTATACTTTCAATTTGACTTCAATCATCTCCATTATTGTGACAGATATCAAATATTTTTAAACTATAAAAATGTTAATGAGATTATGGCTAAAATTTTATCAGTTGATAGATTCTTGAAATATCTCATTTCTGAGATGATTGAGGCTCTATTCGACAATTTATGGTACCATAAACTCACTTCAAATCGTCCTCCCTCATAAGGTCTAACGTCCATGGTAACTATTCAAAAATTTCGAAAAAAACAACCGGCAAAAAGTTGAAAGTTCGAGATGCGAGAAAGAATGCGCAAACTGATGATTCAGTATTCCAACCAAAACGAATCTCTGTGTGTTGTGCCCTCCTCCCCACAACTCTGACGATCCGAATCCTCCGAATCGACGATGATATTTCACTAACTCTTTGCTCTACTTTAACATCGCGCCTCGCGTTTTTGAGCAAACAGTCAAACTGAAATATACAGTTGTGCTCTTGCGCTCTCTTTCTTTCGCATCACGCCGCAAGAGCTCAATGCTCCCCGCGAGCCGCCACACACGAGATAGTAGGGAAAAAAAACTCTTGTTGAACTCAATTCAAGTGGATCCCACTTCTACAATTTGATGATCACATAGGAATAAGAGAAGGGGGAATGCGAAAGAGTGAAAATTGATAACTCGAGAGTATAA</canonical>
            <polymorphic>GGTGTATTGTTTGGAAGACACTTGTCGTTGAGGCTGAACATTATTTTATTGGTTCCTGTTTATGTTACCTCTACGTGCGTTTTTTTTTGGTAGACAAAACCAAGTACAAAATAGTGGAATATTGTTTTCGTGAGAACAAAATGAACCAAAAACAGAGCTATGAAAATATATAAATTCGATAATTCCCTACCTCACTATGTGGAGTCCCATGAATCCGTCGCTCGAATGTCTCGATTGTGTGAGCCTCCTCACTTCCGATTTTCTGAAAAATATTTTTTTATTTTTTAACTTTGATTGATTTCAAGTCCCCTACACCTTTTGGTCATATTTGAATCTCTTATACTTTCAATTTGACTTCAATCATCTCCATTATTGTGACAGATATCAAATATTTTTAAACTATAAAAATGTTAATGAGATTATGGCTAAAATTTTATCAGTTGATAGATTCTTGAAATATCTCATTTCTGAGATGATTGAGGCTCTATTCGACAATTTAYGGTACCATAAACTCACTTCAAATCGTCCTCCCTCATAAGGTCTAACGTCCATGGTAACTATTCAAAAATTTCGAAAAAAACAACCGGCAAAAAGTTGAAAGTTCGAGATGCGAGAAAGAATGCGCAAACTGATGATTCAGTATTCCAACCAAAACGAATCTCTGTGTGTTGTGCCCTCCTCCCCACAACTCTGACGATCCGAATCCTCCGAATCGACGATGATATTTCACTAACTCTTTGCTCTACTTTAACATCGCGCCTCGCGTTTTTGAGCAAACAGTCAAACTGAAATATACAGTTGTGCTCTTGCGCTCTCTTTCTTTCGCATCACGCCGCAAGAGCTCAATGCTCCCCGCGAGCCGCCACACACGAGATAGTAGGGAAAAAAAACTCTTGTTGAACTCAATTCAAGTGGATCCCACTTCTACAATTTGATGATCACATAGGAATAAGAGAAGGGGGAATGCGAAAGAGTGAAAATTGATAACTCGAGAGTATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCTACACCTTTTGGTCATA</pcr_primer_p1>
		<pcr_primer_p2>TACCATGGACGTTAGACCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCCTACACCTTTTGGTCATATTTGAATCTCTTATACTTTCAATTTGACTTCAATCATCTCCATTATTGTGACAGATATCAAATATTTTTAAACTATAAAAATGTTAATGAGATTATGGCTAAAATTTTATCAGTTGATAGATTCTTGAAATATCTCATTTCTGAGATGATTGAGGCTCTATTCGACAATTTATGGTACCATAAACTCACTTCAAATCGTCCTCCCTCATAAGGTCTAACGTCCATGGTA</canonical_amplicon>
		<polymorphic_amplicon>CCCTACACCTTTTGGTCATATTTGAATCTCTTATACTTTCAATTTGACTTCAATCATCTCCATTATTGTGACAGATATCAAATATTTTTAAACTATAAAAATGTTAATGAGATTATGGCTAAAATTTTATCAGTTGATAGATTCTTGAAATATCTCATTTCTGAGATGATTGAGGCTCTATTCGACAATTTAYGGTACCATAAACTCACTTCAAATCGTCCTCCCTCATAAGGTCTAACGTCCATGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21207</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>228495</contig_pos>
        <strand>+</strand>
        <context>AAAAACAACC[A/G]GCAAAAAGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAGGTCTAACGTCCATGGTAACTATTCAAAAATTTCGAAAAAAACAACC</left_flank>
        <right_flank>GCAAAAAGTTGAAAGTTCGAGATGCGAGAAAGAATGCGCAAACTGATGAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGTAGACAAAACCAAGTACAAAATAGTGGAATATTGTTTTCGTGAGAACAAAATGAACCAAAAACAGAGCTATGAAAATATATAAATTCGATAATTCCCTACCTCACTATGTGGAGTCCCATGAATCCGTCGCTCGAATGTCTCGATTGTGTGAGCCTCCTCACTTCCGATTTTCTGAAAAATATTTTTTTATTTTTTAACTTTGATTGATTTCAAGTCCCCTACACCTTTTGGTCATATTTGAATCTCTTATACTTTCAATTTGACTTCAATCATCTCCATTATTGTGACAGATATCAAATATTTTTAAACTATAAAAATGTTAATGAGATTATGGCTAAAATTTTATCAGTTGATAGATTCTTGAAATATCTCATTTCTGAGATGATTGAGGCTCTATTCGACAATTTATGGTACCATAAACTCACTTCAAATCGTCCTCCCTCATAAGGTCTAACGTCCATGGTAACTATTCAAAAATTTCGAAAAAAACAACCGGCAAAAAGTTGAAAGTTCGAGATGCGAGAAAGAATGCGCAAACTGATGATTCAGTATTCCAACCAAAACGAATCTCTGTGTGTTGTGCCCTCCTCCCCACAACTCTGACGATCCGAATCCTCCGAATCGACGATGATATTTCACTAACTCTTTGCTCTACTTTAACATCGCGCCTCGCGTTTTTGAGCAAACAGTCAAACTGAAATATACAGTTGTGCTCTTGCGCTCTCTTTCTTTCGCATCACGCCGCAAGAGCTCAATGCTCCCCGCGAGCCGCCACACACGAGATAGTAGGGAAAAAAAACTCTTGTTGAACTCAATTCAAGTGGATCCCACTTCTACAATTTGATGATCACATAGGAATAAGAGAAGGGGGAATGCGAAAGAGTGAAAATTGATAACTCGAGAGTATAACTGGTTCCGATTTCACGGTCTCCAGGTGATAACTGCTCTAGGAAGTATAGGTAAATACGGGATATGAGTGGATTTATCAAGAGGTC</canonical>
            <polymorphic>TTGGTAGACAAAACCAAGTACAAAATAGTGGAATATTGTTTTCGTGAGAACAAAATGAACCAAAAACAGAGCTATGAAAATATATAAATTCGATAATTCCCTACCTCACTATGTGGAGTCCCATGAATCCGTCGCTCGAATGTCTCGATTGTGTGAGCCTCCTCACTTCCGATTTTCTGAAAAATATTTTTTTATTTTTTAACTTTGATTGATTTCAAGTCCCCTACACCTTTTGGTCATATTTGAATCTCTTATACTTTCAATTTGACTTCAATCATCTCCATTATTGTGACAGATATCAAATATTTTTAAACTATAAAAATGTTAATGAGATTATGGCTAAAATTTTATCAGTTGATAGATTCTTGAAATATCTCATTTCTGAGATGATTGAGGCTCTATTCGACAATTTATGGTACCATAAACTCACTTCAAATCGTCCTCCCTCATAAGGTCTAACGTCCATGGTAACTATTCAAAAATTTCGAAAAAAACAACCRGCAAAAAGTTGAAAGTTCGAGATGCGAGAAAGAATGCGCAAACTGATGATTCAGTATTCCAACCAAAACGAATCTCTGTGTGTTGTGCCCTCCTCCCCACAACTCTGACGATCCGAATCCTCCGAATCGACGATGATATTTCACTAACTCTTTGCTCTACTTTAACATCGCGCCTCGCGTTTTTGAGCAAACAGTCAAACTGAAATATACAGTTGTGCTCTTGCGCTCTCTTTCTTTCGCATCACGCCGCAAGAGCTCAATGCTCCCCGCGAGCCGCCACACACGAGATAGTAGGGAAAAAAAACTCTTGTTGAACTCAATTCAAGTGGATCCCACTTCTACAATTTGATGATCACATAGGAATAAGAGAAGGGGGAATGCGAAAGAGTGAAAATTGATAACTCGAGAGTATAACTGGTTCCGATTTCACGGTCTCCAGGTGATAACTGCTCTAGGAAGTATAGGTAAATACGGGATATGAGTGGATTTATCAAGAGGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAACTCACTTCAAATCGTCCT</pcr_primer_p1>
		<pcr_primer_p2>CGATGTTAAAGTAGAGCAAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAAACTCACTTCAAATCGTCCTCCCTCATAAGGTCTAACGTCCATGGTAACTATTCAAAAATTTCGAAAAAAACAACCGGCAAAAAGTTGAAAGTTCGAGATGCGAGAAAGAATGCGCAAACTGATGATTCAGTATTCCAACCAAAACGAATCTCTGTGTGTTGTGCCCTCCTCCCCACAACTCTGACGATCCGAATCCTCCGAATCGACGATGATATTTCACTAACTCTTTGCTCTACTTTAACATCG</canonical_amplicon>
		<polymorphic_amplicon>ATAAACTCACTTCAAATCGTCCTCCCTCATAAGGTCTAACGTCCATGGTAACTATTCAAAAATTTCGAAAAAAACAACCRGCAAAAAGTTGAAAGTTCGAGATGCGAGAAAGAATGCGCAAACTGATGATTCAGTATTCCAACCAAAACGAATCTCTGTGTGTTGTGCCCTCCTCCCCACAACTCTGACGATCCGAATCCTCCGAATCGACGATGATATTTCACTAACTCTTTGCTCTACTTTAACATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21208</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>230535</contig_pos>
        <strand></strand>
        <context>AAAAAAAGCG[A/G]CAAGTTTCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGCACTCTCATAGAGTATGTATATAATTCAAGGAGAGAAAAAAAAGCG</left_flank>
        <right_flank>CAAGTTTCTAGAATATTACATAAAGCCTCATTTGGTTTCATTGTTCTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAAAACACCATATCCCTGTTTTTCTGGTTTTTTAGTCTTCTCGATGACTCTCATGTAAATTGAGTTTGATCTAGCTAACGAAATTAACCATTTTCCTCCTCATTCTGAATTCTGAACTTTTCCCCTATTACTCGCCTGATGTCTCATAATAGTTCGAAGAAGACGTCTACACTGCGTTAGTTTAATTTGCCCTCACTTCTACGCTCACATCACTTTTCTGCACCACAATTTATTTTATATTTCCTCTCCAATATCGCTTCTTCTGACTTTGTTAATCGGTTGAAGACGATAAAAATTGAATGGCACTCTGAATATTCTTATTTTGCAATAGTTTCATCTACAAATCGGATATGTTGTTGCACTCCAGGACGCGAAAACATTTCCGGCTCATCAGTGTCTATAAAAAATATTTTTGAATTCATAAGCTAAGAGTTTTTTTCTTCCGGAAGCACTCTCATAGAGTATGTATATAATTCAAGGAGAGAAAAAAAAGCGACAAGTTTCTAGAATATTACATAAAGCCTCATTTGGTTTCATTGTTCTTTTTTTGCTAGTGTTTTTCTCTGAAAGATTTCACAGATAGAAACAATTGTTTACAAAACGGACACACTTTAGTTCTCAGACGGATGAGCTCTTCGGTTACGTAGAATGACTTTAAAGGGTCTGTGACCTCTTATTTTTTGGATTTTTGGTAGTTCTAGGTACCCCTTATTCATGTCTGAGGTTGTTTTCAGAAGTTTGTTTTTGAAATTGACCTATTTTAACAAAAACCCCTAGATCCTCATTGTTATGAACAAAGATTCCGCAACCTCAAAAACTTTTTTTCTAGTTTTTAAAAAATTGTTTTCCTTTCGCCGAAAGTTTGAAGTTTTAGAGCCTTAAAAACACATTTTCTTTTGTGATTGCTTTCAAAATCTTCTCTACCGATTACTTAGCTTGTTTGATCCTTCTTCTGTAACTTTCTGACTAGATTTTCTAGGATATGAAGTATTTTTC</canonical>
            <polymorphic>AAAAAAAAACACCATATCCCTGTTTTTCTGGTTTTTTAGTCTTCTCGATGACTCTCATGTAAATTGAGTTTGATCTAGCTAACGAAATTAACCATTTTCCTCCTCATTCTGAATTCTGAACTTTTCCCCTATTACTCGCCTGATGTCTCATAATAGTTCGAAGAAGACGTCTACACTGCGTTAGTTTAATTTGCCCTCACTTCTACGCTCACATCACTTTTCTGCACCACAATTTATTTTATATTTCCTCTCCAATATCGCTTCTTCTGACTTTGTTAATCGGTTGAAGACGATAAAAATTGAATGGCACTCTGAATATTCTTATTTTGCAATAGTTTCATCTACAAATCGGATATGTTGTTGCACTCCAGGACGCGAAAACATTTCCGGCTCATCAGTGTCTATAAAAAATATTTTTGAATTCATAAGCTAAGAGTTTTTTTCTTCCGGAAGCACTCTCATAGAGTATGTATATAATTCAAGGAGAGAAAAAAAAGCGRCAAGTTTCTAGAATATTACATAAAGCCTCATTTGGTTTCATTGTTCTTTTTTTGCTAGTGTTTTTCTCTGAAAGATTTCACAGATAGAAACAATTGTTTACAAAACGGACACACTTTAGTTCTCAGACGGATGAGCTCTTCGGTTACGTAGAATGACTTTAAAGGGTCTGTGACCTCTTATTTTTTGGATTTTTGGTAGTTCTAGGTACCCCTTATTCATGTCTGAGGTTGTTTTCAGAAGTTTGTTTTTGAAATTGACCTATTTTAACAAAAACCCCTAGATCCTCATTGTTATGAACAAAGATTCCGCAACCTCAAAAACTTTTTTTCTAGTTTTTAAAAAATTGTTTTCCTTTCGCCGAAAGTTTGAAGTTTTAGAGCCTTAAAAACACATTTTCTTTTGTGATTGCTTTCAAAATCTTCTCTACCGATTACTTAGCTTGTTTGATCCTTCTTCTGTAACTTTCTGACTAGATTTTCTAGGATATGAAGTATTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGCAATAGTTTCATCTACAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCTTTCAGAGAAAAACACTAGCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGCAATAGTTTCATCTACAAATCGGATATGTTGTTGCACTCCAGGACGCGAAAACATTTCCGGCTCATCAGTGTCTATAAAAAATATTTTTGAATTCATAAGCTAAGAGTTTTTTTCTTCCGGAAGCACTCTCATAGAGTATGTATATAATTCAAGGAGAGAAAAAAAAGCGACAAGTTTCTAGAATATTACATAAAGCCTCATTTGGTTTCATTGTTCTTTTTTTGCTAGTGTTTTTCTCTGAAAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTGCAATAGTTTCATCTACAAATCGGATATGTTGTTGCACTCCAGGACGCGAAAACATTTCCGGCTCATCAGTGTCTATAAAAAATATTTTTGAATTCATAAGCTAAGAGTTTTTTTCTTCCGGAAGCACTCTCATAGAGTATGTATATAATTCAAGGAGAGAAAAAAAAGCGRCAAGTTTCTAGAATATTACATAAAGCCTCATTTGGTTTCATTGTTCTTTTTTTGCTAGTGTTTTTCTCTGAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21209</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>230511</contig_pos>
        <strand>+</strand>
        <context>GTATGTATAT[A/G]ATTCAAGGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAGCTAAGAGTTTTTTTCTTCCGGAAGCACTCTCATAGAGTATGTATAT</left_flank>
        <right_flank>ATTCAAGGAGAGAAAAAAAAGCGACAAGTTTCTAGAATATTACATAAAGC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCCACCTATCAAGAATTTTCAACAAAAAAAAACACCATATCCCTGTTTTTCTGGTTTTTTAGTCTTCTCGATGACTCTCATGTAAATTGAGTTTGATCTAGCTAACGAAATTAACCATTTTCCTCCTCATTCTGAATTCTGAACTTTTCCCCTATTACTCGCCTGATGTCTCATAATAGTTCGAAGAAGACGTCTACACTGCGTTAGTTTAATTTGCCCTCACTTCTACGCTCACATCACTTTTCTGCACCACAATTTATTTTATATTTCCTCTCCAATATCGCTTCTTCTGACTTTGTTAATCGGTTGAAGACGATAAAAATTGAATGGCACTCTGAATATTCTTATTTTGCAATAGTTTCATCTACAAATCGGATATGTTGTTGCACTCCAGGACGCGAAAACATTTCCGGCTCATCAGTGTCTATAAAAAATATTTTTGAATTCATAAGCTAAGAGTTTTTTTCTTCCGGAAGCACTCTCATAGAGTATGTATATAATTCAAGGAGAGAAAAAAAAGCGACAAGTTTCTAGAATATTACATAAAGCCTCATTTGGTTTCATTGTTCTTTTTTTGCTAGTGTTTTTCTCTGAAAGATTTCACAGATAGAAACAATTGTTTACAAAACGGACACACTTTAGTTCTCAGACGGATGAGCTCTTCGGTTACGTAGAATGACTTTAAAGGGTCTGTGACCTCTTATTTTTTGGATTTTTGGTAGTTCTAGGTACCCCTTATTCATGTCTGAGGTTGTTTTCAGAAGTTTGTTTTTGAAATTGACCTATTTTAACAAAAACCCCTAGATCCTCATTGTTATGAACAAAGATTCCGCAACCTCAAAAACTTTTTTTCTAGTTTTTAAAAAATTGTTTTCCTTTCGCCGAAAGTTTGAAGTTTTAGAGCCTTAAAAACACATTTTCTTTTGTGATTGCTTTCAAAATCTTCTCTACCGATTACTTAGCTTGTTTGATCCTTCTTCTGTAACTTTCTGACTAGAT</canonical>
            <polymorphic>GCCCACCTATCAAGAATTTTCAACAAAAAAAAACACCATATCCCTGTTTTTCTGGTTTTTTAGTCTTCTCGATGACTCTCATGTAAATTGAGTTTGATCTAGCTAACGAAATTAACCATTTTCCTCCTCATTCTGAATTCTGAACTTTTCCCCTATTACTCGCCTGATGTCTCATAATAGTTCGAAGAAGACGTCTACACTGCGTTAGTTTAATTTGCCCTCACTTCTACGCTCACATCACTTTTCTGCACCACAATTTATTTTATATTTCCTCTCCAATATCGCTTCTTCTGACTTTGTTAATCGGTTGAAGACGATAAAAATTGAATGGCACTCTGAATATTCTTATTTTGCAATAGTTTCATCTACAAATCGGATATGTTGTTGCACTCCAGGACGCGAAAACATTTCCGGCTCATCAGTGTCTATAAAAAATATTTTTGAATTCATAAGCTAAGAGTTTTTTTCTTCCGGAAGCACTCTCATAGAGTATGTATATRATTCAAGGAGAGAAAAAAAAGCGACAAGTTTCTAGAATATTACATAAAGCCTCATTTGGTTTCATTGTTCTTTTTTTGCTAGTGTTTTTCTCTGAAAGATTTCACAGATAGAAACAATTGTTTACAAAACGGACACACTTTAGTTCTCAGACGGATGAGCTCTTCGGTTACGTAGAATGACTTTAAAGGGTCTGTGACCTCTTATTTTTTGGATTTTTGGTAGTTCTAGGTACCCCTTATTCATGTCTGAGGTTGTTTTCAGAAGTTTGTTTTTGAAATTGACCTATTTTAACAAAAACCCCTAGATCCTCATTGTTATGAACAAAGATTCCGCAACCTCAAAAACTTTTTTTCTAGTTTTTAAAAAATTGTTTTCCTTTCGCCGAAAGTTTGAAGTTTTAGAGCCTTAAAAACACATTTTCTTTTGTGATTGCTTTCAAAATCTTCTCTACCGATTACTTAGCTTGTTTGATCCTTCTTCTGTAACTTTCTGACTAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>161 134 122 116 90 76 71 67 56 43 26 24 14</canonical_bands>
                <polymorphic_bands>172 161 134 122 90 76 71 67 43 26 24 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGCAATAGTTTCATCTACAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCTTTCAGAGAAAAACACTAGCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGCAATAGTTTCATCTACAAATCGGATATGTTGTTGCACTCCAGGACGCGAAAACATTTCCGGCTCATCAGTGTCTATAAAAAATATTTTTGAATTCATAAGCTAAGAGTTTTTTTCTTCCGGAAGCACTCTCATAGAGTATGTATATAATTCAAGGAGAGAAAAAAAAGCGACAAGTTTCTAGAATATTACATAAAGCCTCATTTGGTTTCATTGTTCTTTTTTTGCTAGTGTTTTTCTCTGAAAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTGCAATAGTTTCATCTACAAATCGGATATGTTGTTGCACTCCAGGACGCGAAAACATTTCCGGCTCATCAGTGTCTATAAAAAATATTTTTGAATTCATAAGCTAAGAGTTTTTTTCTTCCGGAAGCACTCTCATAGAGTATGTATATRATTCAAGGAGAGAAAAAAAAGCGACAAGTTTCTAGAATATTACATAAAGCCTCATTTGGTTTCATTGTTCTTTTTTTGCTAGTGTTTTTCTCTGAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21210</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>230341</contig_pos>
        <strand>+</strand>
        <context>AAAATTGAAT[A/G]GCACTCTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATCGCTTCTTCTGACTTTGTTAATCGGTTGAAGACGATAAAAATTGAAT</left_flank>
        <right_flank>GCACTCTGAATATTCTTATTTTGCAATAGTTTCATCTACAAATCGGATAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTGACTCATTATGGAAAACATCAAGATTAAACTTGTGAAATAACTTTTTCTTTCGGTTTTTCAAAGAGAATAATGCGGAAATATGAGGTGAGGAGTGGTTTGTTATTTTTTAAAATTTCCACAAAAAACATAAATTTCTGACAAATCTGGTATTATCCTGTATTTCAAAGCCCACCTATCAAGAATTTTCAACAAAAAAAAACACCATATCCCTGTTTTTCTGGTTTTTTAGTCTTCTCGATGACTCTCATGTAAATTGAGTTTGATCTAGCTAACGAAATTAACCATTTTCCTCCTCATTCTGAATTCTGAACTTTTCCCCTATTACTCGCCTGATGTCTCATAATAGTTCGAAGAAGACGTCTACACTGCGTTAGTTTAATTTGCCCTCACTTCTACGCTCACATCACTTTTCTGCACCACAATTTATTTTATATTTCCTCTCCAATATCGCTTCTTCTGACTTTGTTAATCGGTTGAAGACGATAAAAATTGAATGGCACTCTGAATATTCTTATTTTGCAATAGTTTCATCTACAAATCGGATATGTTGTTGCACTCCAGGACGCGAAAACATTTCCGGCTCATCAGTGTCTATAAAAAATATTTTTGAATTCATAAGCTAAGAGTTTTTTTCTTCCGGAAGCACTCTCATAGAGTATGTATATAATTCAAGGAGAGAAAAAAAAGCGACAAGTTTCTAGAATATTACATAAAGCCTCATTTGGTTTCATTGTTCTTTTTTTGCTAGTGTTTTTCTCTGAAAGATTTCACAGATAGAAACAATTGTTTACAAAACGGACACACTTTAGTTCTCAGACGGATGAGCTCTTCGGTTACGTAGAATGACTTTAAAGGGTCTGTGACCTCTTATTTTTTGGATTTTTGGTAGTTCTAGGTACCCCTTATTCATGTCTGAGGTTGTTTTCAGAAGTTTGTTTTTGAAATTGACCTATTTTAACAAAAACCCCTAGATCCTCATTGTTATGAACAAAGATT</canonical>
            <polymorphic>GCTGACTCATTATGGAAAACATCAAGATTAAACTTGTGAAATAACTTTTTCTTTCGGTTTTTCAAAGAGAATAATGCGGAAATATGAGGTGAGGAGTGGTTTGTTATTTTTTAAAATTTCCACAAAAAACATAAATTTCTGACAAATCTGGTATTATCCTGTATTTCAAAGCCCACCTATCAAGAATTTTCAACAAAAAAAAACACCATATCCCTGTTTTTCTGGTTTTTTAGTCTTCTCGATGACTCTCATGTAAATTGAGTTTGATCTAGCTAACGAAATTAACCATTTTCCTCCTCATTCTGAATTCTGAACTTTTCCCCTATTACTCGCCTGATGTCTCATAATAGTTCGAAGAAGACGTCTACACTGCGTTAGTTTAATTTGCCCTCACTTCTACGCTCACATCACTTTTCTGCACCACAATTTATTTTATATTTCCTCTCCAATATCGCTTCTTCTGACTTTGTTAATCGGTTGAAGACGATAAAAATTGAATRGCACTCTGAATATTCTTATTTTGCAATAGTTTCATCTACAAATCGGATATGTTGTTGCACTCCAGGACGCGAAAACATTTCCGGCTCATCAGTGTCTATAAAAAATATTTTTGAATTCATAAGCTAAGAGTTTTTTTCTTCCGGAAGCACTCTCATAGAGTATGTATATAATTCAAGGAGAGAAAAAAAAGCGACAAGTTTCTAGAATATTACATAAAGCCTCATTTGGTTTCATTGTTCTTTTTTTGCTAGTGTTTTTCTCTGAAAGATTTCACAGATAGAAACAATTGTTTACAAAACGGACACACTTTAGTTCTCAGACGGATGAGCTCTTCGGTTACGTAGAATGACTTTAAAGGGTCTGTGACCTCTTATTTTTTGGATTTTTGGTAGTTCTAGGTACCCCTTATTCATGTCTGAGGTTGTTTTCAGAAGTTTGTTTTTGAAATTGACCTATTTTAACAAAAACCCCTAGATCCTCATTGTTATGAACAAAGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATCGCTTCTTCTGACTTTGT</pcr_primer_p1>
		<pcr_primer_p2>CAAATGAGGCTTTATGTAATATTCT</pcr_primer_p2>
		<pcr_amplicon_size>280</pcr_amplicon_size>
		<canonical_amplicon>ATATCGCTTCTTCTGACTTTGTTAATCGGTTGAAGACGATAAAAATTGAATGGCACTCTGAATATTCTTATTTTGCAATAGTTTCATCTACAAATCGGATATGTTGTTGCACTCCAGGACGCGAAAACATTTCCGGCTCATCAGTGTCTATAAAAAATATTTTTGAATTCATAAGCTAAGAGTTTTTTTCTTCCGGAAGCACTCTCATAGAGTATGTATATAATTCAAGGAGAGAAAAAAAAGCGACAAGTTTCTAGAATATTACATAAAGCCTCATTTG</canonical_amplicon>
		<polymorphic_amplicon>ATATCGCTTCTTCTGACTTTGTTAATCGGTTGAAGACGATAAAAATTGAATRGCACTCTGAATATTCTTATTTTGCAATAGTTTCATCTACAAATCGGATATGTTGTTGCACTCCAGGACGCGAAAACATTTCCGGCTCATCAGTGTCTATAAAAAATATTTTTGAATTCATAAGCTAAGAGTTTTTTTCTTCCGGAAGCACTCTCATAGAGTATGTATATAATTCAAGGAGAGAAAAAAAAGCGACAAGTTTCTAGAATATTACATAAAGCCTCATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21211</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>230320</contig_pos>
        <strand>+</strand>
        <context>GTTAATCGGT[C/T]GAAGACGATA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTTTATATTTCCTCTCCAATATCGCTTCTTCTGACTTTGTTAATCGGT</left_flank>
        <right_flank>GAAGACGATAAAAATTGAATGGCACTCTGAATATTCTTATTTTGCAATAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAAAAACCGTCGACTGTGAGCTGACTCATTATGGAAAACATCAAGATTAAACTTGTGAAATAACTTTTTCTTTCGGTTTTTCAAAGAGAATAATGCGGAAATATGAGGTGAGGAGTGGTTTGTTATTTTTTAAAATTTCCACAAAAAACATAAATTTCTGACAAATCTGGTATTATCCTGTATTTCAAAGCCCACCTATCAAGAATTTTCAACAAAAAAAAACACCATATCCCTGTTTTTCTGGTTTTTTAGTCTTCTCGATGACTCTCATGTAAATTGAGTTTGATCTAGCTAACGAAATTAACCATTTTCCTCCTCATTCTGAATTCTGAACTTTTCCCCTATTACTCGCCTGATGTCTCATAATAGTTCGAAGAAGACGTCTACACTGCGTTAGTTTAATTTGCCCTCACTTCTACGCTCACATCACTTTTCTGCACCACAATTTATTTTATATTTCCTCTCCAATATCGCTTCTTCTGACTTTGTTAATCGGTTGAAGACGATAAAAATTGAATGGCACTCTGAATATTCTTATTTTGCAATAGTTTCATCTACAAATCGGATATGTTGTTGCACTCCAGGACGCGAAAACATTTCCGGCTCATCAGTGTCTATAAAAAATATTTTTGAATTCATAAGCTAAGAGTTTTTTTCTTCCGGAAGCACTCTCATAGAGTATGTATATAATTCAAGGAGAGAAAAAAAAGCGACAAGTTTCTAGAATATTACATAAAGCCTCATTTGGTTTCATTGTTCTTTTTTTGCTAGTGTTTTTCTCTGAAAGATTTCACAGATAGAAACAATTGTTTACAAAACGGACACACTTTAGTTCTCAGACGGATGAGCTCTTCGGTTACGTAGAATGACTTTAAAGGGTCTGTGACCTCTTATTTTTTGGATTTTTGGTAGTTCTAGGTACCCCTTATTCATGTCTGAGGTTGTTTTCAGAAGTTTGTTTTTGAAATTGACCTATTTTAACAAAAACCCCTAGATCC</canonical>
            <polymorphic>ATCAAAAACCGTCGACTGTGAGCTGACTCATTATGGAAAACATCAAGATTAAACTTGTGAAATAACTTTTTCTTTCGGTTTTTCAAAGAGAATAATGCGGAAATATGAGGTGAGGAGTGGTTTGTTATTTTTTAAAATTTCCACAAAAAACATAAATTTCTGACAAATCTGGTATTATCCTGTATTTCAAAGCCCACCTATCAAGAATTTTCAACAAAAAAAAACACCATATCCCTGTTTTTCTGGTTTTTTAGTCTTCTCGATGACTCTCATGTAAATTGAGTTTGATCTAGCTAACGAAATTAACCATTTTCCTCCTCATTCTGAATTCTGAACTTTTCCCCTATTACTCGCCTGATGTCTCATAATAGTTCGAAGAAGACGTCTACACTGCGTTAGTTTAATTTGCCCTCACTTCTACGCTCACATCACTTTTCTGCACCACAATTTATTTTATATTTCCTCTCCAATATCGCTTCTTCTGACTTTGTTAATCGGTYGAAGACGATAAAAATTGAATGGCACTCTGAATATTCTTATTTTGCAATAGTTTCATCTACAAATCGGATATGTTGTTGCACTCCAGGACGCGAAAACATTTCCGGCTCATCAGTGTCTATAAAAAATATTTTTGAATTCATAAGCTAAGAGTTTTTTTCTTCCGGAAGCACTCTCATAGAGTATGTATATAATTCAAGGAGAGAAAAAAAAGCGACAAGTTTCTAGAATATTACATAAAGCCTCATTTGGTTTCATTGTTCTTTTTTTGCTAGTGTTTTTCTCTGAAAGATTTCACAGATAGAAACAATTGTTTACAAAACGGACACACTTTAGTTCTCAGACGGATGAGCTCTTCGGTTACGTAGAATGACTTTAAAGGGTCTGTGACCTCTTATTTTTTGGATTTTTGGTAGTTCTAGGTACCCCTTATTCATGTCTGAGGTTGTTTTCAGAAGTTTGTTTTTGAAATTGACCTATTTTAACAAAAACCCCTAGATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCTGAACTTTTCCCCTATTA</pcr_primer_p1>
		<pcr_primer_p2>CATATCCGATTTGTAGATGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATTCTGAACTTTTCCCCTATTACTCGCCTGATGTCTCATAATAGTTCGAAGAAGACGTCTACACTGCGTTAGTTTAATTTGCCCTCACTTCTACGCTCACATCACTTTTCTGCACCACAATTTATTTTATATTTCCTCTCCAATATCGCTTCTTCTGACTTTGTTAATCGGTTGAAGACGATAAAAATTGAATGGCACTCTGAATATTCTTATTTTGCAATAGTTTCATCTACAAATCGGATATG</canonical_amplicon>
		<polymorphic_amplicon>AATTCTGAACTTTTCCCCTATTACTCGCCTGATGTCTCATAATAGTTCGAAGAAGACGTCTACACTGCGTTAGTTTAATTTGCCCTCACTTCTACGCTCACATCACTTTTCTGCACCACAATTTATTTTATATTTCCTCTCCAATATCGCTTCTTCTGACTTTGTTAATCGGTYGAAGACGATAAAAATTGAATGGCACTCTGAATATTCTTATTTTGCAATAGTTTCATCTACAAATCGGATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21212</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>230242</contig_pos>
        <strand>+</strand>
        <context>TCACTTCTAC[A/G]CTCACATCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGAAGAAGACGTCTACACTGCGTTAGTTTAATTTGCCCTCACTTCTAC</left_flank>
        <right_flank>CTCACATCACTTTTCTGCACCACAATTTATTTTATATTTCCTCTCCAATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGCGCGCTCTTTCGAAATTGTTTAACCTCATTCATTTTTTCTACTGAGATGCTGTAAAAAATAAAAAATGCCGAAGAATCAAAAACCGTCGACTGTGAGCTGACTCATTATGGAAAACATCAAGATTAAACTTGTGAAATAACTTTTTCTTTCGGTTTTTCAAAGAGAATAATGCGGAAATATGAGGTGAGGAGTGGTTTGTTATTTTTTAAAATTTCCACAAAAAACATAAATTTCTGACAAATCTGGTATTATCCTGTATTTCAAAGCCCACCTATCAAGAATTTTCAACAAAAAAAAACACCATATCCCTGTTTTTCTGGTTTTTTAGTCTTCTCGATGACTCTCATGTAAATTGAGTTTGATCTAGCTAACGAAATTAACCATTTTCCTCCTCATTCTGAATTCTGAACTTTTCCCCTATTACTCGCCTGATGTCTCATAATAGTTCGAAGAAGACGTCTACACTGCGTTAGTTTAATTTGCCCTCACTTCTACGCTCACATCACTTTTCTGCACCACAATTTATTTTATATTTCCTCTCCAATATCGCTTCTTCTGACTTTGTTAATCGGTTGAAGACGATAAAAATTGAATGGCACTCTGAATATTCTTATTTTGCAATAGTTTCATCTACAAATCGGATATGTTGTTGCACTCCAGGACGCGAAAACATTTCCGGCTCATCAGTGTCTATAAAAAATATTTTTGAATTCATAAGCTAAGAGTTTTTTTCTTCCGGAAGCACTCTCATAGAGTATGTATATAATTCAAGGAGAGAAAAAAAAGCGACAAGTTTCTAGAATATTACATAAAGCCTCATTTGGTTTCATTGTTCTTTTTTTGCTAGTGTTTTTCTCTGAAAGATTTCACAGATAGAAACAATTGTTTACAAAACGGACACACTTTAGTTCTCAGACGGATGAGCTCTTCGGTTACGTAGAATGACTTTAAAGGGTCTGTGACCTCTTATTTTTTGGATTTTTGGTAGTTCTAGGT</canonical>
            <polymorphic>TAGCGCGCTCTTTCGAAATTGTTTAACCTCATTCATTTTTTCTACTGAGATGCTGTAAAAAATAAAAAATGCCGAAGAATCAAAAACCGTCGACTGTGAGCTGACTCATTATGGAAAACATCAAGATTAAACTTGTGAAATAACTTTTTCTTTCGGTTTTTCAAAGAGAATAATGCGGAAATATGAGGTGAGGAGTGGTTTGTTATTTTTTAAAATTTCCACAAAAAACATAAATTTCTGACAAATCTGGTATTATCCTGTATTTCAAAGCCCACCTATCAAGAATTTTCAACAAAAAAAAACACCATATCCCTGTTTTTCTGGTTTTTTAGTCTTCTCGATGACTCTCATGTAAATTGAGTTTGATCTAGCTAACGAAATTAACCATTTTCCTCCTCATTCTGAATTCTGAACTTTTCCCCTATTACTCGCCTGATGTCTCATAATAGTTCGAAGAAGACGTCTACACTGCGTTAGTTTAATTTGCCCTCACTTCTACRCTCACATCACTTTTCTGCACCACAATTTATTTTATATTTCCTCTCCAATATCGCTTCTTCTGACTTTGTTAATCGGTTGAAGACGATAAAAATTGAATGGCACTCTGAATATTCTTATTTTGCAATAGTTTCATCTACAAATCGGATATGTTGTTGCACTCCAGGACGCGAAAACATTTCCGGCTCATCAGTGTCTATAAAAAATATTTTTGAATTCATAAGCTAAGAGTTTTTTTCTTCCGGAAGCACTCTCATAGAGTATGTATATAATTCAAGGAGAGAAAAAAAAGCGACAAGTTTCTAGAATATTACATAAAGCCTCATTTGGTTTCATTGTTCTTTTTTTGCTAGTGTTTTTCTCTGAAAGATTTCACAGATAGAAACAATTGTTTACAAAACGGACACACTTTAGTTCTCAGACGGATGAGCTCTTCGGTTACGTAGAATGACTTTAAAGGGTCTGTGACCTCTTATTTTTTGGATTTTTGGTAGTTCTAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCTGAACTTTTCCCCTATTA</pcr_primer_p1>
		<pcr_primer_p2>CATATCCGATTTGTAGATGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATTCTGAACTTTTCCCCTATTACTCGCCTGATGTCTCATAATAGTTCGAAGAAGACGTCTACACTGCGTTAGTTTAATTTGCCCTCACTTCTACGCTCACATCACTTTTCTGCACCACAATTTATTTTATATTTCCTCTCCAATATCGCTTCTTCTGACTTTGTTAATCGGTTGAAGACGATAAAAATTGAATGGCACTCTGAATATTCTTATTTTGCAATAGTTTCATCTACAAATCGGATATG</canonical_amplicon>
		<polymorphic_amplicon>AATTCTGAACTTTTCCCCTATTACTCGCCTGATGTCTCATAATAGTTCGAAGAAGACGTCTACACTGCGTTAGTTTAATTTGCCCTCACTTCTACRCTCACATCACTTTTCTGCACCACAATTTATTTTATATTTCCTCTCCAATATCGCTTCTTCTGACTTTGTTAATCGGTTGAAGACGATAAAAATTGAATGGCACTCTGAATATTCTTATTTTGCAATAGTTTCATCTACAAATCGGATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21213</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>230054</contig_pos>
        <strand></strand>
        <context>ACACCATATC[C/A]CTGTTTTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATTTCAAAGCCCACCTATCAAGAATTTTCAACAAAAAAAAACACCATATC</left_flank>
        <right_flank>CTGTTTTTCTGGTTTTTTAGTCTTCTCGATGACTCTCATGTAAATTGAGT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTAAAATAGGACATTCTATTGATTGCAGGATTTTTGGTACCGGACCTTCCGGGCCGGTCCTGGGACTTGAAAATTCTGGCGGGCCGGCCTGGAATTCCGGGCTTTGGCGGCCCGGCCTGGAATTTTACAAGTACATATGTCATTACTCATTTTTGTAGTGCAATAAACAGAAACGGAATAATTGAATAGCGCGCTCTTTCGAAATTGTTTAACCTCATTCATTTTTTCTACTGAGATGCTGTAAAAAATAAAAAATGCCGAAGAATCAAAAACCGTCGACTGTGAGCTGACTCATTATGGAAAACATCAAGATTAAACTTGTGAAATAACTTTTTCTTTCGGTTTTTCAAAGAGAATAATGCGGAAATATGAGGTGAGGAGTGGTTTGTTATTTTTTAAAATTTCCACAAAAAACATAAATTTCTGACAAATCTGGTATTATCCTGTATTTCAAAGCCCACCTATCAAGAATTTTCAACAAAAAAAAACACCATATCCCTGTTTTTCTGGTTTTTTAGTCTTCTCGATGACTCTCATGTAAATTGAGTTTGATCTAGCTAACGAAATTAACCATTTTCCTCCTCATTCTGAATTCTGAACTTTTCCCCTATTACTCGCCTGATGTCTCATAATAGTTCGAAGAAGACGTCTACACTGCGTTAGTTTAATTTGCCCTCACTTCTACGCTCACATCACTTTTCTGCACCACAATTTATTTTATATTTCCTCTCCAATATCGCTTCTTCTGACTTTGTTAATCGGTTGAAGACGATAAAAATTGAATGGCACTCTGAATATTCTTATTTTGCAATAGTTTCATCTACAAATCGGATATGTTGTTGCACTCCAGGACGCGAAAACATTTCCGGCTCATCAGTGTCTATAAAAAATATTTTTGAATTCATAAGCTAAGAGTTTTTTTCTTCCGGAAGCACTCTCATAGAGTATGTATATAATTCAAGGAGAGAAAAAAAAGCGACAAGTTTCTAGAATATTAC</canonical>
            <polymorphic>ATTTAAAATAGGACATTCTATTGATTGCAGGATTTTTGGTACCGGACCTTCCGGGCCGGTCCTGGGACTTGAAAATTCTGGCGGGCCGGCCTGGAATTCCGGGCTTTGGCGGCCCGGCCTGGAATTTTACAAGTACATATGTCATTACTCATTTTTGTAGTGCAATAAACAGAAACGGAATAATTGAATAGCGCGCTCTTTCGAAATTGTTTAACCTCATTCATTTTTTCTACTGAGATGCTGTAAAAAATAAAAAATGCCGAAGAATCAAAAACCGTCGACTGTGAGCTGACTCATTATGGAAAACATCAAGATTAAACTTGTGAAATAACTTTTTCTTTCGGTTTTTCAAAGAGAATAATGCGGAAATATGAGGTGAGGAGTGGTTTGTTATTTTTTAAAATTTCCACAAAAAACATAAATTTCTGACAAATCTGGTATTATCCTGTATTTCAAAGCCCACCTATCAAGAATTTTCAACAAAAAAAAACACCATATCMCTGTTTTTCTGGTTTTTTAGTCTTCTCGATGACTCTCATGTAAATTGAGTTTGATCTAGCTAACGAAATTAACCATTTTCCTCCTCATTCTGAATTCTGAACTTTTCCCCTATTACTCGCCTGATGTCTCATAATAGTTCGAAGAAGACGTCTACACTGCGTTAGTTTAATTTGCCCTCACTTCTACGCTCACATCACTTTTCTGCACCACAATTTATTTTATATTTCCTCTCCAATATCGCTTCTTCTGACTTTGTTAATCGGTTGAAGACGATAAAAATTGAATGGCACTCTGAATATTCTTATTTTGCAATAGTTTCATCTACAAATCGGATATGTTGTTGCACTCCAGGACGCGAAAACATTTCCGGCTCATCAGTGTCTATAAAAAATATTTTTGAATTCATAAGCTAAGAGTTTTTTTCTTCCGGAAGCACTCTCATAGAGTATGTATATAATTCAAGGAGAGAAAAAAAAGCGACAAGTTTCTAGAATATTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACAAATCTGGTATTATCCTGT</pcr_primer_p1>
		<pcr_primer_p2>CAAATTAAACTAACGCAGTGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGACAAATCTGGTATTATCCTGTATTTCAAAGCCCACCTATCAAGAATTTTCAACAAAAAAAAACACCATATCCCTGTTTTTCTGGTTTTTTAGTCTTCTCGATGACTCTCATGTAAATTGAGTTTGATCTAGCTAACGAAATTAACCATTTTCCTCCTCATTCTGAATTCTGAACTTTTCCCCTATTACTCGCCTGATGTCTCATAATAGTTCGAAGAAGACGTCTACACTGCGTTAGTTTAATTTG</canonical_amplicon>
		<polymorphic_amplicon>TGACAAATCTGGTATTATCCTGTATTTCAAAGCCCACCTATCAAGAATTTTCAACAAAAAAAAACACCATATCMCTGTTTTTCTGGTTTTTTAGTCTTCTCGATGACTCTCATGTAAATTGAGTTTGATCTAGCTAACGAAATTAACCATTTTCCTCCTCATTCTGAATTCTGAACTTTTCCCCTATTACTCGCCTGATGTCTCATAATAGTTCGAAGAAGACGTCTACACTGCGTTAGTTTAATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21214</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>276515</contig_pos>
        <strand>+</strand>
        <context>GAAGAAGAAG[A/C]GAGTTTGGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTGAGAGAAAGGTGAAAAATGCGAAATGTTGAAAATGAGAAGAAGAAG</left_flank>
        <right_flank>GAGTTTGGGGAAAAAGTTCGGAAAATTATCAGACAGGGCAGAGATATTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTTATAGAAATAAAGATTTCGTGATTTTTCATAAAATTTTTTGAACATATGATTTCATAGAACTATTACTAAAAGTGTGAATAAAGTTCTTGTATGTAGAAAAAATATGATCCCAAATTGATACAAATCAAATTTTATTTCATCTGGACAAACACACTAAGCACCTGATGTTCTTAGAAAAAAATGTTCTCAGAAAATCTAGTTTGATATTTTCAACTACTATTATTTATCATCTCTTTATTTGTCGATGCTCATTTAAGGATTTTTTAGAGGATCCAACAACACATCAAAACTAATAACAACAAGAAAACTCAATGATGATGATGTGTATGCTTTTTTTCAGGGACCCCCTTTCCTGAAATAAAAGTACACTTGAGTTTGTTTCTTGTTTCGTGTCTTGTTGTTTGCCCCTATTAAGGAGAAATGGGGTCTAATTAGAAAGGCAATTGAGAGAAAGGTGAAAAATGCGAAATGTTGAAAATGAGAAGAAGAAGAGAGTTTGGGGAAAAAGTTCGGAAAATTATCAGACAGGGCAGAGATATTTTGATACAGCTATTTCCTAGAAAGAAACCTCTAGAATTTCACCGGTAAAAAAGCGAGAATTCTGGTGAAAATGATACCTCCGAGAGAGCCTTTTTGTTTTCAAGTGATAAAAGCAAATTGTGGTCGGCGAGAGATTGAGTTACGTTGAAAGTTCGAGACCTTTGTTACTAGTTCTCTCCTCTTTTTTTCTTTTTTCTCTCAACTTGTTTTTCAAGATTAAGTGAGAGAAAAAATAGCGAACTAATTTATTAGTTCCCTTTTTTTATTTTTGTCGGTTCGGAAAAGCGGTTCTGTTTTTTTTTTCGAAAAAAAAATCAGGAAAACATGTCAAAAATTAGATTGGCTATGTCTGGAGCAGATGAAATGTCAGAGAATCGAAGATCAATTAGGTGGAATGGTGGGAATGCTTGGAACATCGGAAGTTGTTGGCGGCTGAAAACACACACAAGAAA</canonical>
            <polymorphic>ATTTTTTTATAGAAATAAAGATTTCGTGATTTTTCATAAAATTTTTTGAACATATGATTTCATAGAACTATTACTAAAAGTGTGAATAAAGTTCTTGTATGTAGAAAAAATATGATCCCAAATTGATACAAATCAAATTTTATTTCATCTGGACAAACACACTAAGCACCTGATGTTCTTAGAAAAAAATGTTCTCAGAAAATCTAGTTTGATATTTTCAACTACTATTATTTATCATCTCTTTATTTGTCGATGCTCATTTAAGGATTTTTTAGAGGATCCAACAACACATCAAAACTAATAACAACAAGAAAACTCAATGATGATGATGTGTATGCTTTTTTTCAGGGACCCCCTTTCCTGAAATAAAAGTACACTTGAGTTTGTTTCTTGTTTCGTGTCTTGTTGTTTGCCCCTATTAAGGAGAAATGGGGTCTAATTAGAAAGGCAATTGAGAGAAAGGTGAAAAATGCGAAATGTTGAAAATGAGAAGAAGAAGMGAGTTTGGGGAAAAAGTTCGGAAAATTATCAGACAGGGCAGAGATATTTTGATACAGCTATTTCCTAGAAAGAAACCTCTAGAATTTCACCGGTAAAAAAGCGAGAATTCTGGTGAAAATGATACCTCCGAGAGAGCCTTTTTGTTTTCAAGTGATAAAAGCAAATTGTGGTCGGCGAGAGATTGAGTTACGTTGAAAGTTCGAGACCTTTGTTACTAGTTCTCTCCTCTTTTTTTCTTTTTTCTCTCAACTTGTTTTTCAAGATTAAGTGAGAGAAAAAATAGCGAACTAATTTATTAGTTCCCTTTTTTTATTTTTGTCGGTTCGGAAAAGCGGTTCTGTTTTTTTTTTCGAAAAAAAAATCAGGAAAACATGTCAAAAATTAGATTGGCTATGTCTGGAGCAGATGAAATGTCAGAGAATCGAAGATCAATTAGGTGGAATGGTGGGAATGCTTGGAACATCGGAAGTTGTTGGCGGCTGAAAACACACACAAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTAAGGAGAAATGGGGTCTA</pcr_primer_p1>
		<pcr_primer_p2>GCTTTTATCACTTGAAAACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTATTAAGGAGAAATGGGGTCTAATTAGAAAGGCAATTGAGAGAAAGGTGAAAAATGCGAAATGTTGAAAATGAGAAGAAGAAGAGAGTTTGGGGAAAAAGTTCGGAAAATTATCAGACAGGGCAGAGATATTTTGATACAGCTATTTCCTAGAAAGAAACCTCTAGAATTTCACCGGTAAAAAAGCGAGAATTCTGGTGAAAATGATACCTCCGAGAGAGCCTTTTTGTTTTCAAGTGATAAAAGC</canonical_amplicon>
		<polymorphic_amplicon>CTATTAAGGAGAAATGGGGTCTAATTAGAAAGGCAATTGAGAGAAAGGTGAAAAATGCGAAATGTTGAAAATGAGAAGAAGAAGMGAGTTTGGGGAAAAAGTTCGGAAAATTATCAGACAGGGCAGAGATATTTTGATACAGCTATTTCCTAGAAAGAAACCTCTAGAATTTCACCGGTAAAAAAGCGAGAATTCTGGTGAAAATGATACCTCCGAGAGAGCCTTTTTGTTTTCAAGTGATAAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21215</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>276609</contig_pos>
        <strand>+</strand>
        <context>ATTTCACCGG[A/T]AAAAAAGCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATATTTTGATACAGCTATTTCCTAGAAAGAAACCTCTAGAATTTCACCGG</left_flank>
        <right_flank>AAAAAAGCGAGAATTCTGGTGAAAATGATACCTCCGAGAGAGCCTTTTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTATGTAGAAAAAATATGATCCCAAATTGATACAAATCAAATTTTATTTCATCTGGACAAACACACTAAGCACCTGATGTTCTTAGAAAAAAATGTTCTCAGAAAATCTAGTTTGATATTTTCAACTACTATTATTTATCATCTCTTTATTTGTCGATGCTCATTTAAGGATTTTTTAGAGGATCCAACAACACATCAAAACTAATAACAACAAGAAAACTCAATGATGATGATGTGTATGCTTTTTTTCAGGGACCCCCTTTCCTGAAATAAAAGTACACTTGAGTTTGTTTCTTGTTTCGTGTCTTGTTGTTTGCCCCTATTAAGGAGAAATGGGGTCTAATTAGAAAGGCAATTGAGAGAAAGGTGAAAAATGCGAAATGTTGAAAATGAGAAGAAGAAGAGAGTTTGGGGAAAAAGTTCGGAAAATTATCAGACAGGGCAGAGATATTTTGATACAGCTATTTCCTAGAAAGAAACCTCTAGAATTTCACCGGTAAAAAAGCGAGAATTCTGGTGAAAATGATACCTCCGAGAGAGCCTTTTTGTTTTCAAGTGATAAAAGCAAATTGTGGTCGGCGAGAGATTGAGTTACGTTGAAAGTTCGAGACCTTTGTTACTAGTTCTCTCCTCTTTTTTTCTTTTTTCTCTCAACTTGTTTTTCAAGATTAAGTGAGAGAAAAAATAGCGAACTAATTTATTAGTTCCCTTTTTTTATTTTTGTCGGTTCGGAAAAGCGGTTCTGTTTTTTTTTTCGAAAAAAAAATCAGGAAAACATGTCAAAAATTAGATTGGCTATGTCTGGAGCAGATGAAATGTCAGAGAATCGAAGATCAATTAGGTGGAATGGTGGGAATGCTTGGAACATCGGAAGTTGTTGGCGGCTGAAAACACACACAAGAAATTTTAAATTTCTAAATTTTCAAAAATTCTAAATTTCTGAATTTGCGAAAATTCTGAATTTCTGAATTTCTGAAATTTTGAAAATTTAAATTTCT</canonical>
            <polymorphic>TTGTATGTAGAAAAAATATGATCCCAAATTGATACAAATCAAATTTTATTTCATCTGGACAAACACACTAAGCACCTGATGTTCTTAGAAAAAAATGTTCTCAGAAAATCTAGTTTGATATTTTCAACTACTATTATTTATCATCTCTTTATTTGTCGATGCTCATTTAAGGATTTTTTAGAGGATCCAACAACACATCAAAACTAATAACAACAAGAAAACTCAATGATGATGATGTGTATGCTTTTTTTCAGGGACCCCCTTTCCTGAAATAAAAGTACACTTGAGTTTGTTTCTTGTTTCGTGTCTTGTTGTTTGCCCCTATTAAGGAGAAATGGGGTCTAATTAGAAAGGCAATTGAGAGAAAGGTGAAAAATGCGAAATGTTGAAAATGAGAAGAAGAAGAGAGTTTGGGGAAAAAGTTCGGAAAATTATCAGACAGGGCAGAGATATTTTGATACAGCTATTTCCTAGAAAGAAACCTCTAGAATTTCACCGGWAAAAAAGCGAGAATTCTGGTGAAAATGATACCTCCGAGAGAGCCTTTTTGTTTTCAAGTGATAAAAGCAAATTGTGGTCGGCGAGAGATTGAGTTACGTTGAAAGTTCGAGACCTTTGTTACTAGTTCTCTCCTCTTTTTTTCTTTTTTCTCTCAACTTGTTTTTCAAGATTAAGTGAGAGAAAAAATAGCGAACTAATTTATTAGTTCCCTTTTTTTATTTTTGTCGGTTCGGAAAAGCGGTTCTGTTTTTTTTTTCGAAAAAAAAATCAGGAAAACATGTCAAAAATTAGATTGGCTATGTCTGGAGCAGATGAAATGTCAGAGAATCGAAGATCAATTAGGTGGAATGGTGGGAATGCTTGGAACATCGGAAGTTGTTGGCGGCTGAAAACACACACAAGAAATTTTAAATTTCTAAATTTTCAAAAATTCTAAATTTCTGAATTTGCGAAAATTCTGAATTTCTGAATTTCTGAAATTTTGAAAATTTAAATTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACCGGT</site>
                <isoschizomers>
                    <enzyme>AgeI</enzyme>
                    <enzyme>AsiAI</enzyme>
                    <enzyme>BshTI</enzyme>
                    <enzyme>CspAI</enzyme>
                    <enzyme>PinAI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTAAGGAGAAATGGGGTCTA</pcr_primer_p1>
		<pcr_primer_p2>GCTTTTATCACTTGAAAACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTATTAAGGAGAAATGGGGTCTAATTAGAAAGGCAATTGAGAGAAAGGTGAAAAATGCGAAATGTTGAAAATGAGAAGAAGAAGAGAGTTTGGGGAAAAAGTTCGGAAAATTATCAGACAGGGCAGAGATATTTTGATACAGCTATTTCCTAGAAAGAAACCTCTAGAATTTCACCGGTAAAAAAGCGAGAATTCTGGTGAAAATGATACCTCCGAGAGAGCCTTTTTGTTTTCAAGTGATAAAAGC</canonical_amplicon>
		<polymorphic_amplicon>CTATTAAGGAGAAATGGGGTCTAATTAGAAAGGCAATTGAGAGAAAGGTGAAAAATGCGAAATGTTGAAAATGAGAAGAAGAAGAGAGTTTGGGGAAAAAGTTCGGAAAATTATCAGACAGGGCAGAGATATTTTGATACAGCTATTTCCTAGAAAGAAACCTCTAGAATTTCACCGGWAAAAAAGCGAGAATTCTGGTGAAAATGATACCTCCGAGAGAGCCTTTTTGTTTTCAAGTGATAAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21216</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>276742</contig_pos>
        <strand>+</strand>
        <context>TAGTTCTCTC[A/C]TCTTTTTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAGAGATTGAGTTACGTTGAAAGTTCGAGACCTTTGTTACTAGTTCTCTC</left_flank>
        <right_flank>TCTTTTTTTCTTTTTTCTCTCAACTTGTTTTTCAAGATTAAGTGAGAGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATTTATCATCTCTTTATTTGTCGATGCTCATTTAAGGATTTTTTAGAGGATCCAACAACACATCAAAACTAATAACAACAAGAAAACTCAATGATGATGATGTGTATGCTTTTTTTCAGGGACCCCCTTTCCTGAAATAAAAGTACACTTGAGTTTGTTTCTTGTTTCGTGTCTTGTTGTTTGCCCCTATTAAGGAGAAATGGGGTCTAATTAGAAAGGCAATTGAGAGAAAGGTGAAAAATGCGAAATGTTGAAAATGAGAAGAAGAAGAGAGTTTGGGGAAAAAGTTCGGAAAATTATCAGACAGGGCAGAGATATTTTGATACAGCTATTTCCTAGAAAGAAACCTCTAGAATTTCACCGGTAAAAAAGCGAGAATTCTGGTGAAAATGATACCTCCGAGAGAGCCTTTTTGTTTTCAAGTGATAAAAGCAAATTGTGGTCGGCGAGAGATTGAGTTACGTTGAAAGTTCGAGACCTTTGTTACTAGTTCTCTCCTCTTTTTTTCTTTTTTCTCTCAACTTGTTTTTCAAGATTAAGTGAGAGAAAAAATAGCGAACTAATTTATTAGTTCCCTTTTTTTATTTTTGTCGGTTCGGAAAAGCGGTTCTGTTTTTTTTTTCGAAAAAAAAATCAGGAAAACATGTCAAAAATTAGATTGGCTATGTCTGGAGCAGATGAAATGTCAGAGAATCGAAGATCAATTAGGTGGAATGGTGGGAATGCTTGGAACATCGGAAGTTGTTGGCGGCTGAAAACACACACAAGAAATTTTAAATTTCTAAATTTTCAAAAATTCTAAATTTCTGAATTTGCGAAAATTCTGAATTTCTGAATTTCTGAAATTTTGAAAATTTAAATTTCTAAAGTTCTGAGATTCCAAAGCATTCGAACTTCTGAATTTTCCAAAATTCTAAATTTTTGAATATCCGAAAATTCCGAGTTTCTGAATTTCCAAATATTCTAAATTACTAATTTTCCGAAAATTCTGAATTTTT</canonical>
            <polymorphic>TTATTTATCATCTCTTTATTTGTCGATGCTCATTTAAGGATTTTTTAGAGGATCCAACAACACATCAAAACTAATAACAACAAGAAAACTCAATGATGATGATGTGTATGCTTTTTTTCAGGGACCCCCTTTCCTGAAATAAAAGTACACTTGAGTTTGTTTCTTGTTTCGTGTCTTGTTGTTTGCCCCTATTAAGGAGAAATGGGGTCTAATTAGAAAGGCAATTGAGAGAAAGGTGAAAAATGCGAAATGTTGAAAATGAGAAGAAGAAGAGAGTTTGGGGAAAAAGTTCGGAAAATTATCAGACAGGGCAGAGATATTTTGATACAGCTATTTCCTAGAAAGAAACCTCTAGAATTTCACCGGTAAAAAAGCGAGAATTCTGGTGAAAATGATACCTCCGAGAGAGCCTTTTTGTTTTCAAGTGATAAAAGCAAATTGTGGTCGGCGAGAGATTGAGTTACGTTGAAAGTTCGAGACCTTTGTTACTAGTTCTCTCMTCTTTTTTTCTTTTTTCTCTCAACTTGTTTTTCAAGATTAAGTGAGAGAAAAAATAGCGAACTAATTTATTAGTTCCCTTTTTTTATTTTTGTCGGTTCGGAAAAGCGGTTCTGTTTTTTTTTTCGAAAAAAAAATCAGGAAAACATGTCAAAAATTAGATTGGCTATGTCTGGAGCAGATGAAATGTCAGAGAATCGAAGATCAATTAGGTGGAATGGTGGGAATGCTTGGAACATCGGAAGTTGTTGGCGGCTGAAAACACACACAAGAAATTTTAAATTTCTAAATTTTCAAAAATTCTAAATTTCTGAATTTGCGAAAATTCTGAATTTCTGAATTTCTGAAATTTTGAAAATTTAAATTTCTAAAGTTCTGAGATTCCAAAGCATTCGAACTTCTGAATTTTCCAAAATTCTAAATTTTTGAATATCCGAAAATTCCGAGTTTCTGAATTTCCAAATATTCTAAATTACTAATTTTCCGAAAATTCTGAATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCAAGTGATAAAAGCAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCAATCTAATTTTTGACATGTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCAAGTGATAAAAGCAAATTGTGGTCGGCGAGAGATTGAGTTACGTTGAAAGTTCGAGACCTTTGTTACTAGTTCTCTCCTCTTTTTTTCTTTTTTCTCTCAACTTGTTTTTCAAGATTAAGTGAGAGAAAAAATAGCGAACTAATTTATTAGTTCCCTTTTTTTATTTTTGTCGGTTCGGAAAAGCGGTTCTGTTTTTTTTTTCGAAAAAAAAATCAGGAAAACATGTCAAAAATTAGATTGG</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCAAGTGATAAAAGCAAATTGTGGTCGGCGAGAGATTGAGTTACGTTGAAAGTTCGAGACCTTTGTTACTAGTTCTCTCMTCTTTTTTTCTTTTTTCTCTCAACTTGTTTTTCAAGATTAAGTGAGAGAAAAAATAGCGAACTAATTTATTAGTTCCCTTTTTTTATTTTTGTCGGTTCGGAAAAGCGGTTCTGTTTTTTTTTTCGAAAAAAAAATCAGGAAAACATGTCAAAAATTAGATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21217</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>278397</contig_pos>
        <strand>+</strand>
        <context>ACGAAACTTT[A/T]AAGTTTTCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTT</left_flank>
        <right_flank>AAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACCATCAAAAGCAAATCGAGACGAAAAACGAGAGGATGATACTGGATCGGCGAGAAACAACAAATTCTATTGGAACAGCAATTGGTGGAAGTGAATGCTAGAAATGTAATTCTGTGCTAGGACCACCACAAGAAAAAAAACATGGCCACAAAAAGTTCCATTTACCCAATGAACATTTTTTTTTCTCTTTTCTTTTTCTACTCTATAAGAGAGGACGCGTCTTGAAAACAAAAAAAAAGAGTGAAAGAATCTGAAAAAAGGACTTTATAGCTGGAGATGGGGTATGTAGGAGAGGATAAGATGAGATAGAATGTGTCATCAACATAGAAATAGGTACCAGTCTGGTTTAAAGCCGGAAAGCGAGAAAATCGGAAATACCGTTGTTCCGAAAAATGCAGAAAATGTGTTTTCGGAATTTTTTCGTTCGATGTGTCGTA</canonical>
            <polymorphic>TAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTWAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACCATCAAAAGCAAATCGAGACGAAAAACGAGAGGATGATACTGGATCGGCGAGAAACAACAAATTCTATTGGAACAGCAATTGGTGGAAGTGAATGCTAGAAATGTAATTCTGTGCTAGGACCACCACAAGAAAAAAAACATGGCCACAAAAAGTTCCATTTACCCAATGAACATTTTTTTTTCTCTTTTCTTTTTCTACTCTATAAGAGAGGACGCGTCTTGAAAACAAAAAAAAAGAGTGAAAGAATCTGAAAAAAGGACTTTATAGCTGGAGATGGGGTATGTAGGAGAGGATAAGATGAGATAGAATGTGTCATCAACATAGAAATAGGTACCAGTCTGGTTTAAAGCCGGAAAGCGAGAAAATCGGAAATACCGTTGTTCCGAAAAATGCAGAAAATGTGTTTTCGGAATTTTTTCGTTCGATGTGTCGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>411 244 231 90 24</canonical_bands>
                <polymorphic_bands>435 244 231 90</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGACTCTTATTATTTGGTTTTTGA</pcr_primer_p1>
		<pcr_primer_p2>CAGTATCATCCTCTCGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACCATCAAAAGCAAATCGAGACGAAAAACGAGAGGATGATACTG</canonical_amplicon>
		<polymorphic_amplicon>TGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTWAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACCATCAAAAGCAAATCGAGACGAAAAACGAGAGGATGATACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21218</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>278377</contig_pos>
        <strand></strand>
        <context>TGGTTTTAAC[C/A]TCAAAAATCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAAC</left_flank>
        <right_flank>TCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACCATCAAAAGCAAATCGAGACGAAAAACGAGAGGATGATACTGGATCGGCGAGAAACAACAAATTCTATTGGAACAGCAATTGGTGGAAGTGAATGCTAGAAATGTAATTCTGTGCTAGGACCACCACAAGAAAAAAAACATGGCCACAAAAAGTTCCATTTACCCAATGAACATTTTTTTTTCTCTTTTCTTTTTCTACTCTATAAGAGAGGACGCGTCTTGAAAACAAAAAAAAAGAGTGAAAGAATCTGAAAAAAGGACTTTATAGCTGGAGATGGGGTATGTAGGAGAGGATAAGATGAGATAGAATGTGTCATCAACATAGAAATAGGTACCAGTCTGGTTTAAAGCCGGAAAGCGAGAAAATCGGAAATACCGTTGTTCCGAAAAATGCAGAAAATGTGTTTTCGGAATT</canonical>
            <polymorphic>TCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACMTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACCATCAAAAGCAAATCGAGACGAAAAACGAGAGGATGATACTGGATCGGCGAGAAACAACAAATTCTATTGGAACAGCAATTGGTGGAAGTGAATGCTAGAAATGTAATTCTGTGCTAGGACCACCACAAGAAAAAAAACATGGCCACAAAAAGTTCCATTTACCCAATGAACATTTTTTTTTCTCTTTTCTTTTTCTACTCTATAAGAGAGGACGCGTCTTGAAAACAAAAAAAAAGAGTGAAAGAATCTGAAAAAAGGACTTTATAGCTGGAGATGGGGTATGTAGGAGAGGATAAGATGAGATAGAATGTGTCATCAACATAGAAATAGGTACCAGTCTGGTTTAAAGCCGGAAAGCGAGAAAATCGGAAATACCGTTGTTCCGAAAAATGCAGAAAATGTGTTTTCGGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACTCTTATTATTTGGTTTTTGA</pcr_primer_p1>
		<pcr_primer_p2>CAGTATCATCCTCTCGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACCATCAAAAGCAAATCGAGACGAAAAACGAGAGGATGATACTG</canonical_amplicon>
		<polymorphic_amplicon>TGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACMTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACCATCAAAAGCAAATCGAGACGAAAAACGAGAGGATGATACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21219</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>278339</contig_pos>
        <strand>+</strand>
        <context>TTATGAAATC[C/T]TGAGTGGMTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATC</left_flank>
        <right_flank>TGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACCATCAAAAGCAAATCGAGACGAAAAACGAGAGGATGATACTGGATCGGCGAGAAACAACAAATTCTATTGGAACAGCAATTGGTGGAAGTGAATGCTAGAAATGTAATTCTGTGCTAGGACCACCACAAGAAAAAAAACATGGCCACAAAAAGTTCCATTTACCCAATGAACATTTTTTTTTCTCTTTTCTTTTTCTACTCTATAAGAGAGGACGCGTCTTGAAAACAAAAAAAAAGAGTGAAAGAATCTGAAAAAAGGACTTTATAGCTGGAGATGGGGTATGTAGGAGAGGATAAGATGAGATAGAATGTGTCATCAACATAGAAATAGGTACCAGTCTGGTTTAAAGCCGGAAAGCGAGAAAATCGGAAATACC</canonical>
            <polymorphic>ACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCYTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACCATCAAAAGCAAATCGAGACGAAAAACGAGAGGATGATACTGGATCGGCGAGAAACAACAAATTCTATTGGAACAGCAATTGGTGGAAGTGAATGCTAGAAATGTAATTCTGTGCTAGGACCACCACAAGAAAAAAAACATGGCCACAAAAAGTTCCATTTACCCAATGAACATTTTTTTTTCTCTTTTCTTTTTCTACTCTATAAGAGAGGACGCGTCTTGAAAACAAAAAAAAAGAGTGAAAGAATCTGAAAAAAGGACTTTATAGCTGGAGATGGGGTATGTAGGAGAGGATAAGATGAGATAGAATGTGTCATCAACATAGAAATAGGTACCAGTCTGGTTTAAAGCCGGAAAGCGAGAAAATCGGAAATACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 434 66</canonical_bands>
                <polymorphic_bands>566 434</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGGAAGAATCAGAAGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>GAACTTTGCGAAATTCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCYTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21220</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>278202</contig_pos>
        <strand></strand>
        <context>GAAAAAGCAA[C/A]AATCAAGAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAA</left_flank>
        <right_flank>AATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGACTGCTCCCTAGAAATGTGTTCTAGAAATTTCTACGCAAAAAAACGCTTCACCAAAAAACAGAATAAAGCAACTTCTCCAGAAGACAAACCTTCACGGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACCATCAAAAGCAAATCGAGACGAAAAACGAGAGGATGATACTGGATCGGCGAGAAACAACAAATTCTATTGGAACAGCAATTGGTGGAAGTGAATGCTAGAAATGTAATTCTGTGCTAGGACCACCACAAGAAAAAAAACATGGCCACAAAAAGTTCCATTTACCCAATGAACATTTTTTTTTCTCTTTTCTTTTTCTACTCTATAAGAGAGGACGCGTCTTGAAAACAAAAAAAAAGAGT</canonical>
            <polymorphic>TGGACTGCTCCCTAGAAATGTGTTCTAGAAATTTCTACGCAAAAAAACGCTTCACCAAAAAACAGAATAAAGCAACTTCTCCAGAAGACAAACCTTCACGGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAAMAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACCATCAAAAGCAAATCGAGACGAAAAACGAGAGGATGATACTGGATCGGCGAGAAACAACAAATTCTATTGGAACAGCAATTGGTGGAAGTGAATGCTAGAAATGTAATTCTGTGCTAGGACCACCACAAGAAAAAAAACATGGCCACAAAAAGTTCCATTTACCCAATGAACATTTTTTTTTCTCTTTTCTTTTTCTACTCTATAAGAGAGGACGCGTCTTGAAAACAAAAAAAAAGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAATTGTGAATGTGAAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>AAGAGTCAAAAATAACTCACAATG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTT</canonical_amplicon>
		<polymorphic_amplicon>AGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAAMAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21221</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>278137</contig_pos>
        <strand>+</strand>
        <context>ATTMAGAAAA[G/T]TTTCATTATA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAA</left_flank>
        <right_flank>TTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTTGAATTTTTGAAAATTAAAAGATTATACCTTTAATTGGGTCTGAAAAACACGAAAACTCTGGACTGCTCCCTAGAAATGTGTTCTAGAAATTTCTACGCAAAAAAACGCTTCACCAAAAAACAGAATAAAGCAACTTCTCCAGAAGACAAACCTTCACGGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACCATCAAAAGCAAATCGAGACGAAAAACGAGAGGATGATACTGGATCGGCGAGAAACAACAAATTCTATTGGAACAGCAATTGGTGGAAGTGAATGCTAGAAATGTAATTCTGTGCTAGGACCACCACAAGAAAAAAAACATGGCCACAAAAAGTTCCATTTACCCAATGAACATT</canonical>
            <polymorphic>AATTTTTGAATTTTTGAAAATTAAAAGATTATACCTTTAATTGGGTCTGAAAAACACGAAAACTCTGGACTGCTCCCTAGAAATGTGTTCTAGAAATTTCTACGCAAAAAAACGCTTCACCAAAAAACAGAATAAAGCAACTTCTCCAGAAGACAAACCTTCACGGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAAKTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACCATCAAAAGCAAATCGAGACGAAAAACGAGAGGATGATACTGGATCGGCGAGAAACAACAAATTCTATTGGAACAGCAATTGGTGGAAGTGAATGCTAGAAATGTAATTCTGTGCTAGGACCACCACAAGAAAAAAAACATGGCCACAAAAAGTTCCATTTACCCAATGAACATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>324 150 116 115 113 86 73 9 8 6</canonical_bands>
                <polymorphic_bands>474 116 115 113 86 73 9 8 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>150 113 88 75 73 70 70 56 50 49 46 35 28 27 20 17 10 9 8 6 0</canonical_bands>
                <polymorphic_bands>225 113 88 73 70 70 56 50 49 46 35 28 27 20 17 10 9 8 6 0</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAATTGTGAATGTGAAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>AAGAGTCAAAAATAACTCACAATG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTT</canonical_amplicon>
		<polymorphic_amplicon>AGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAAKTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21222</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>278130</contig_pos>
        <strand>+</strand>
        <context>GTGRCATATT[A/C]AGAAAAKTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATT</left_flank>
        <right_flank>AGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTCTGAATTTTTGAATTTTTGAAAATTAAAAGATTATACCTTTAATTGGGTCTGAAAAACACGAAAACTCTGGACTGCTCCCTAGAAATGTGTTCTAGAAATTTCTACGCAAAAAAACGCTTCACCAAAAAACAGAATAAAGCAACTTCTCCAGAAGACAAACCTTCACGGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACCATCAAAAGCAAATCGAGACGAAAAACGAGAGGATGATACTGGATCGGCGAGAAACAACAAATTCTATTGGAACAGCAATTGGTGGAAGTGAATGCTAGAAATGTAATTCTGTGCTAGGACCACCACAAGAAAAAAAACATGGCCACAAAAAGTTCCATTTACCCAAT</canonical>
            <polymorphic>AATTCTGAATTTTTGAATTTTTGAAAATTAAAAGATTATACCTTTAATTGGGTCTGAAAAACACGAAAACTCTGGACTGCTCCCTAGAAATGTGTTCTAGAAATTTCTACGCAAAAAAACGCTTCACCAAAAAACAGAATAAAGCAACTTCTCCAGAAGACAAACCTTCACGGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTMAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACCATCAAAAGCAAATCGAGACGAAAAACGAGAGGATGATACTGGATCGGCGAGAAACAACAAATTCTATTGGAACAGCAATTGGTGGAAGTGAATGCTAGAAATGTAATTCTGTGCTAGGACCACCACAAGAAAAAAAACATGGCCACAAAAAGTTCCATTTACCCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>454 244 234 28 24 16</canonical_bands>
                <polymorphic_bands>698 234 28 24 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAATTGTGAATGTGAAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>AAGAGTCAAAAATAACTCACAATG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTT</canonical_amplicon>
		<polymorphic_amplicon>AGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTMAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21223</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>278123</contig_pos>
        <strand>+</strand>
        <context>GCAAACTGTG[A/G]CATATTMAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTG</left_flank>
        <right_flank>CATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCGAAAATTCTGAATTTTTGAATTTTTGAAAATTAAAAGATTATACCTTTAATTGGGTCTGAAAAACACGAAAACTCTGGACTGCTCCCTAGAAATGTGTTCTAGAAATTTCTACGCAAAAAAACGCTTCACCAAAAAACAGAATAAAGCAACTTCTCCAGAAGACAAACCTTCACGGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACCATCAAAAGCAAATCGAGACGAAAAACGAGAGGATGATACTGGATCGGCGAGAAACAACAAATTCTATTGGAACAGCAATTGGTGGAAGTGAATGCTAGAAATGTAATTCTGTGCTAGGACCACCACAAGAAAAAAAACATGGCCACAAAAAGTTCCATTT</canonical>
            <polymorphic>TTCCGAAAATTCTGAATTTTTGAATTTTTGAAAATTAAAAGATTATACCTTTAATTGGGTCTGAAAAACACGAAAACTCTGGACTGCTCCCTAGAAATGTGTTCTAGAAATTTCTACGCAAAAAAACGCTTCACCAAAAAACAGAATAAAGCAACTTCTCCAGAAGACAAACCTTCACGGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGRCATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACCATCAAAAGCAAATCGAGACGAAAAACGAGAGGATGATACTGGATCGGCGAGAAACAACAAATTCTATTGGAACAGCAATTGGTGGAAGTGAATGCTAGAAATGTAATTCTGTGCTAGGACCACCACAAGAAAAAAAACATGGCCACAAAAAGTTCCATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>496 306 198</canonical_bands>
                <polymorphic_bands>694 306</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAATTGTGAATGTGAAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>AAGAGTCAAAAATAACTCACAATG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTT</canonical_amplicon>
		<polymorphic_amplicon>AGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGRCATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21224</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>278090</contig_pos>
        <strand>+</strand>
        <context>GAATGGTGCA[C/T]TGTACATGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCA</left_flank>
        <right_flank>TGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGAAAAATTAATAATTTCTAAATTTCTAAATTTCCGAAAATTCTGAATTTTTGAATTTTTGAAAATTAAAAGATTATACCTTTAATTGGGTCTGAAAAACACGAAAACTCTGGACTGCTCCCTAGAAATGTGTTCTAGAAATTTCTACGCAAAAAAACGCTTCACCAAAAAACAGAATAAAGCAACTTCTCCAGAAGACAAACCTTCACGGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACCATCAAAAGCAAATCGAGACGAAAAACGAGAGGATGATACTGGATCGGCGAGAAACAACAAATTCTATTGGAACAGCAATTGGTGGAAGTGAATGCTAGAAATGTAATTCTGTGCTAGGACCACCACA</canonical>
            <polymorphic>TTCGAAAAATTAATAATTTCTAAATTTCTAAATTTCCGAAAATTCTGAATTTTTGAATTTTTGAAAATTAAAAGATTATACCTTTAATTGGGTCTGAAAAACACGAAAACTCTGGACTGCTCCCTAGAAATGTGTTCTAGAAATTTCTACGCAAAAAAACGCTTCACCAAAAAACAGAATAAAGCAACTTCTCCAGAAGACAAACCTTCACGGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCAYTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACCATCAAAAGCAAATCGAGACGAAAAACGAGAGGATGATACTGGATCGGCGAGAAACAACAAATTCTATTGGAACAGCAATTGGTGGAAGTGAATGCTAGAAATGTAATTCTGTGCTAGGACCACCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAATTGTGAATGTGAAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>AAGAGTCAAAAATAACTCACAATG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTT</canonical_amplicon>
		<polymorphic_amplicon>AGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCAYTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21226</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>278074</contig_pos>
        <strand>+</strand>
        <context>TCTAGAAAAS[A/T]TATCAGAATG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAAC</left_flank>
        <right_flank>TATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTGAATTTCTGATTTTCGAAAAATTAATAATTTCTAAATTTCTAAATTTCCGAAAATTCTGAATTTTTGAATTTTTGAAAATTAAAAGATTATACCTTTAATTGGGTCTGAAAAACACGAAAACTCTGGACTGCTCCCTAGAAATGTGTTCTAGAAATTTCTACGCAAAAAAACGCTTCACCAAAAAACAGAATAAAGCAACTTCTCCAGAAGACAAACCTTCACGGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACCATCAAAAGCAAATCGAGACGAAAAACGAGAGGATGATACTGGATCGGCGAGAAACAACAAATTCTATTGGAACAGCAATTGGTGGAAGTGAATGCTAGAAATGTAATTCTG</canonical>
            <polymorphic>CTCTGAATTTCTGATTTTCGAAAAATTAATAATTTCTAAATTTCTAAATTTCCGAAAATTCTGAATTTTTGAATTTTTGAAAATTAAAAGATTATACCTTTAATTGGGTCTGAAAAACACGAAAACTCTGGACTGCTCCCTAGAAATGTGTTCTAGAAATTTCTACGCAAAAAAACGCTTCACCAAAAAACAGAATAAAGCAACTTCTCCAGAAGACAAACCTTCACGGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACWTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACCATCAAAAGCAAATCGAGACGAAAAACGAGAGGATGATACTGGATCGGCGAGAAACAACAAATTCTATTGGAACAGCAATTGGTGGAAGTGAATGCTAGAAATGTAATTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAATTGTGAATGTGAAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>AAGAGTCAAAAATAACTCACAATG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTT</canonical_amplicon>
		<polymorphic_amplicon>AGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACWTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21227</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>278001</contig_pos>
        <strand>+</strand>
        <context>ACCCCAAAAT[C/T]GAATAAGACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAAT</left_flank>
        <right_flank>GAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTCCGAAAATTTTACATTTTTCAGAATTTTTAAAAATTAAGAGATTCTGAATTTCTGAATTTCCGAAAACTCTGAATTTCTGATTTTCGAAAAATTAATAATTTCTAAATTTCTAAATTTCCGAAAATTCTGAATTTTTGAATTTTTGAAAATTAAAAGATTATACCTTTAATTGGGTCTGAAAAACACGAAAACTCTGGACTGCTCCCTAGAAATGTGTTCTAGAAATTTCTACGCAAAAAAACGCTTCACCAAAAAACAGAATAAAGCAACTTCTCCAGAAGACAAACCTTCACGGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACCATCAAAAGCAAATCGAGACGAAAAACGAGAGGATGATA</canonical>
            <polymorphic>AAATTTCCGAAAATTTTACATTTTTCAGAATTTTTAAAAATTAAGAGATTCTGAATTTCTGAATTTCCGAAAACTCTGAATTTCTGATTTTCGAAAAATTAATAATTTCTAAATTTCTAAATTTCCGAAAATTCTGAATTTTTGAATTTTTGAAAATTAAAAGATTATACCTTTAATTGGGTCTGAAAAACACGAAAACTCTGGACTGCTCCCTAGAAATGTGTTCTAGAAATTTCTACGCAAAAAAACGCTTCACCAAAAAACAGAATAAAGCAACTTCTCCAGAAGACAAACCTTCACGGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATYGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACCATCAAAAGCAAATCGAGACGAAAAACGAGAGGATGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>150 92 88 75 73 70 56 50 49 46 35 27 20 18 17 17 15 10 10 10 10 9 8 8 8 8 7 7 6 1</canonical_bands>
                <polymorphic_bands>150 92 88 76 75 73 70 56 50 46 35 20 18 17 17 15 10 10 10 10 9 8 8 8 8 7 7 6 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTCACAGTGTCTGTCTCAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGGCACAAAATATAATGAA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAA</canonical_amplicon>
		<polymorphic_amplicon>GCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATYGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21228</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>277973</contig_pos>
        <strand>+</strand>
        <context>RAATCAGAAA[A/C]CGGAAAAGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAA</left_flank>
        <right_flank>CGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGAATTTCCAAATATTCTAAATTTCTAAATTTCCGAAAATTTTACATTTTTCAGAATTTTTAAAAATTAAGAGATTCTGAATTTCTGAATTTCCGAAAACTCTGAATTTCTGATTTTCGAAAAATTAATAATTTCTAAATTTCTAAATTTCCGAAAATTCTGAATTTTTGAATTTTTGAAAATTAAAAGATTATACCTTTAATTGGGTCTGAAAAACACGAAAACTCTGGACTGCTCCCTAGAAATGTGTTCTAGAAATTTCTACGCAAAAAAACGCTTCACCAAAAAACAGAATAAAGCAACTTCTCCAGAAGACAAACCTTCACGGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACCATCAAAAGCA</canonical>
            <polymorphic>TCTGAATTTCCAAATATTCTAAATTTCTAAATTTCCGAAAATTTTACATTTTTCAGAATTTTTAAAAATTAAGAGATTCTGAATTTCTGAATTTCCGAAAACTCTGAATTTCTGATTTTCGAAAAATTAATAATTTCTAAATTTCTAAATTTCCGAAAATTCTGAATTTTTGAATTTTTGAAAATTAAAAGATTATACCTTTAATTGGGTCTGAAAAACACGAAAACTCTGGACTGCTCCCTAGAAATGTGTTCTAGAAATTTCTACGCAAAAAAACGCTTCACCAAAAAACAGAATAAAGCAACTTCTCCAGAAGACAAACCTTCACGGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAAMCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACCATCAAAAGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 336 164</canonical_bands>
                <polymorphic_bands>836 164</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAATTCAAATTCGATAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTCTTTTCACATTCACAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>GGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAAMCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21229</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>277963</contig_pos>
        <strand>+</strand>
        <context>ATTTTCCACG[A/G]AATCAGAAAM</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACG</left_flank>
        <right_flank>AATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGAATTTCTGAATTTCCAAATATTCTAAATTTCTAAATTTCCGAAAATTTTACATTTTTCAGAATTTTTAAAAATTAAGAGATTCTGAATTTCTGAATTTCCGAAAACTCTGAATTTCTGATTTTCGAAAAATTAATAATTTCTAAATTTCTAAATTTCCGAAAATTCTGAATTTTTGAATTTTTGAAAATTAAAAGATTATACCTTTAATTGGGTCTGAAAAACACGAAAACTCTGGACTGCTCCCTAGAAATGTGTTCTAGAAATTTCTACGCAAAAAAACGCTTCACCAAAAAACAGAATAAAGCAACTTCTCCAGAAGACAAACCTTCACGGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACC</canonical>
            <polymorphic>TTTTTGAATTTCTGAATTTCCAAATATTCTAAATTTCTAAATTTCCGAAAATTTTACATTTTTCAGAATTTTTAAAAATTAAGAGATTCTGAATTTCTGAATTTCCGAAAACTCTGAATTTCTGATTTTCGAAAAATTAATAATTTCTAAATTTCTAAATTTCCGAAAATTCTGAATTTTTGAATTTTTGAAAATTAAAAGATTATACCTTTAATTGGGTCTGAAAAACACGAAAACTCTGGACTGCTCCCTAGAAATGTGTTCTAGAAATTTCTACGCAAAAAAACGCTTCACCAAAAAACAGAATAAAGCAACTTCTCCAGAAGACAAACCTTCACGGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGRAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAATTCAAATTCGATAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTCTTTTCACATTCACAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>GGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGRAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21230</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>277942</contig_pos>
        <strand>+</strand>
        <context>CTGTCTCATT[C/T]TCCMCGAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATT</left_flank>
        <right_flank>TCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAAC</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATATCCAAAATTTCTGAATTTTTGAATTTCTGAATTTCCAAATATTCTAAATTTCTAAATTTCCGAAAATTTTACATTTTTCAGAATTTTTAAAAATTAAGAGATTCTGAATTTCTGAATTTCCGAAAACTCTGAATTTCTGATTTTCGAAAAATTAATAATTTCTAAATTTCTAAATTTCCGAAAATTCTGAATTTTTGAATTTTTGAAAATTAAAAGATTATACCTTTAATTGGGTCTGAAAAACACGAAAACTCTGGACTGCTCCCTAGAAATGTGTTCTAGAAATTTCTACGCAAAAAAACGCTTCACCAAAAAACAGAATAAAGCAACTTCTCCAGAAGACAAACCTTCACGGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGG</canonical>
            <polymorphic>TAAATATCCAAAATTTCTGAATTTTTGAATTTCTGAATTTCCAAATATTCTAAATTTCTAAATTTCCGAAAATTTTACATTTTTCAGAATTTTTAAAAATTAAGAGATTCTGAATTTCTGAATTTCCGAAAACTCTGAATTTCTGATTTTCGAAAAATTAATAATTTCTAAATTTCTAAATTTCCGAAAATTCTGAATTTTTGAATTTTTGAAAATTAAAAGATTATACCTTTAATTGGGTCTGAAAAACACGAAAACTCTGGACTGCTCCCTAGAAATGTGTTCTAGAAATTTCTACGCAAAAAAACGCTTCACCAAAAAACAGAATAAAGCAACTTCTCCAGAAGACAAACCTTCACGGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTYTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAATTCAAATTCGATAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTCTTTTCACATTCACAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>GGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTYTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21232</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>297679</contig_pos>
        <strand>+</strand>
        <context>TTTGTGAATT[G/T]CCTCTGTCTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCACCTAGCTCAGACAAAAATGCTCTCCAATAGAGGATGGTTTGTGAATT</left_flank>
        <right_flank>CCTCTGTCTATCTTTCTGTGTCTTTCTCATTCTAGGAAGTATGTTTAAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATATGGCACGAACTTTGGATTTTATTATTTCATGATTTCATACAATTCCTGAAAAATAGTGTTTCAATCTATTATTCAAGATTTTCAAGATTCAGTTTTGTTGATTTTTTTATACCTTCTACTATCTGTGATCTCCGACTTCTTCCTAACTTCTGGAACTTTAAAAAAAATCACCTCCCCCTCAACCCATTTTCGTCATCCCCGAATGTTACGAAAATTTACTTCCTTCTCTTTTTCTATCACCTCCTATTTTTCAATGTTCTTTCTTAGGTTAAAAAACCAAACCCACAATTACTGTACCCTCATAAAAGTTTCCGTGGGATAATTGGTGGTAGGTGCTCTTCTTCGGACCCAAAATCTGAGGCATGCTCGTAAAATAGGCGGAGCCAATAGTAATTGGGAGGGTGGAGCTTCTACTTGATTGAAAGGGGAGCTTTATCAGTTTATTTCACCTAGCTCAGACAAAAATGCTCTCCAATAGAGGATGGTTTGTGAATTGCCTCTGTCTATCTTTCTGTGTCTTTCTCATTCTAGGAAGTATGTTTAAGAATAGTTAGATTACCAATTAATCATTTTCAATACTTAAGTCTATGAAGAATACGGTAAATGGGAGAAATCAGAATCCGAGCAGCAAGTTTTGCCGAAATTGACAGCCATTAAACGCACCATGCTTGTTGGCATCAGTGAATCTACTGAGCAAGTCTGTGAGAGCACCATTTTCAAGGACAACATCCCACATTATGGGCACTGTAAGGATATATTCTGTCTTATTAATCAGTTCAATAATAAGAATTTCAGTGCTCAACGGGAGTTACGTGGAAATCCTGCAAACTTCCGATTATCGCTTTGTAAAGACGTATGTCAAGTGCTCGAAGGATGACAGACCATCATGTGTTGGAATCCAATCTCGGTAAGTTATTAATTCCAGTGTGAAAAGTTTGAATCTCGAAGTTTTCATAATTCAATAGTTTTTGATAATTTTCAAGATTTCACAATTCA</canonical>
            <polymorphic>TATATGGCACGAACTTTGGATTTTATTATTTCATGATTTCATACAATTCCTGAAAAATAGTGTTTCAATCTATTATTCAAGATTTTCAAGATTCAGTTTTGTTGATTTTTTTATACCTTCTACTATCTGTGATCTCCGACTTCTTCCTAACTTCTGGAACTTTAAAAAAAATCACCTCCCCCTCAACCCATTTTCGTCATCCCCGAATGTTACGAAAATTTACTTCCTTCTCTTTTTCTATCACCTCCTATTTTTCAATGTTCTTTCTTAGGTTAAAAAACCAAACCCACAATTACTGTACCCTCATAAAAGTTTCCGTGGGATAATTGGTGGTAGGTGCTCTTCTTCGGACCCAAAATCTGAGGCATGCTCGTAAAATAGGCGGAGCCAATAGTAATTGGGAGGGTGGAGCTTCTACTTGATTGAAAGGGGAGCTTTATCAGTTTATTTCACCTAGCTCAGACAAAAATGCTCTCCAATAGAGGATGGTTTGTGAATTKCCTCTGTCTATCTTTCTGTGTCTTTCTCATTCTAGGAAGTATGTTTAAGAATAGTTAGATTACCAATTAATCATTTTCAATACTTAAGTCTATGAAGAATACGGTAAATGGGAGAAATCAGAATCCGAGCAGCAAGTTTTGCCGAAATTGACAGCCATTAAACGCACCATGCTTGTTGGCATCAGTGAATCTACTGAGCAAGTCTGTGAGAGCACCATTTTCAAGGACAACATCCCACATTATGGGCACTGTAAGGATATATTCTGTCTTATTAATCAGTTCAATAATAAGAATTTCAGTGCTCAACGGGAGTTACGTGGAAATCCTGCAAACTTCCGATTATCGCTTTGTAAAGACGTATGTCAAGTGCTCGAAGGATGACAGACCATCATGTGTTGGAATCCAATCTCGGTAAGTTATTAATTCCAGTGTGAAAAGTTTGAATCTCGAAGTTTTCATAATTCAATAGTTTTTGATAATTTTCAAGATTTCACAATTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGCATGCTCGTAAAATAG</pcr_primer_p1>
		<pcr_primer_p2>CATTTACCGTATTCTTCATAGACTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAGGCATGCTCGTAAAATAGGCGGAGCCAATAGTAATTGGGAGGGTGGAGCTTCTACTTGATTGAAAGGGGAGCTTTATCAGTTTATTTCACCTAGCTCAGACAAAAATGCTCTCCAATAGAGGATGGTTTGTGAATTGCCTCTGTCTATCTTTCTGTGTCTTTCTCATTCTAGGAAGTATGTTTAAGAATAGTTAGATTACCAATTAATCATTTTCAATACTTAAGTCTATGAAGAATACGGTAAATG</canonical_amplicon>
		<polymorphic_amplicon>GAGGCATGCTCGTAAAATAGGCGGAGCCAATAGTAATTGGGAGGGTGGAGCTTCTACTTGATTGAAAGGGGAGCTTTATCAGTTTATTTCACCTAGCTCAGACAAAAATGCTCTCCAATAGAGGATGGTTTGTGAATTKCCTCTGTCTATCTTTCTGTGTCTTTCTCATTCTAGGAAGTATGTTTAAGAATAGTTAGATTACCAATTAATCATTTTCAATACTTAAGTCTATGAAGAATACGGTAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21233</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>298012</contig_pos>
        <strand>+</strand>
        <context>ATCCTGCAAA[C/G]TTCCGATTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATAATAAGAATTTCAGTGCTCAACGGGAGTTACGTGGAAATCCTGCAAA</left_flank>
        <right_flank>TTCCGATTATCGCTTTGTAAAGACGTATGTCAAGTGCTCGAAGGATGACA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGTGCTCTTCTTCGGACCCAAAATCTGAGGCATGCTCGTAAAATAGGCGGAGCCAATAGTAATTGGGAGGGTGGAGCTTCTACTTGATTGAAAGGGGAGCTTTATCAGTTTATTTCACCTAGCTCAGACAAAAATGCTCTCCAATAGAGGATGGTTTGTGAATTGCCTCTGTCTATCTTTCTGTGTCTTTCTCATTCTAGGAAGTATGTTTAAGAATAGTTAGATTACCAATTAATCATTTTCAATACTTAAGTCTATGAAGAATACGGTAAATGGGAGAAATCAGAATCCGAGCAGCAAGTTTTGCCGAAATTGACAGCCATTAAACGCACCATGCTTGTTGGCATCAGTGAATCTACTGAGCAAGTCTGTGAGAGCACCATTTTCAAGGACAACATCCCACATTATGGGCACTGTAAGGATATATTCTGTCTTATTAATCAGTTCAATAATAAGAATTTCAGTGCTCAACGGGAGTTACGTGGAAATCCTGCAAACTTCCGATTATCGCTTTGTAAAGACGTATGTCAAGTGCTCGAAGGATGACAGACCATCATGTGTTGGAATCCAATCTCGGTAAGTTATTAATTCCAGTGTGAAAAGTTTGAATCTCGAAGTTTTCATAATTCAATAGTTTTTGATAATTTTCAAGATTTCACAATTCAGAAATGTTAGGGTTGCGAGAATTTTTTTCTAAGCTAAGAATCTTCCAGCTATATCAGCGAATGCGTAACCGTCTATGAAAGTGTCCCAGCCATGATTCGCCTTCTTCACAACTACGGACCATTCCAGATGAACTTCATTAGAGTAAGTTGAATATTTTTGAGGATCATCTTTAATCCAGAAGCCTGTATTTTTCCAGGTGCCAATATTCTGTGAATGCCGGTTGAGACGCCAATACAGACACTTCGAGAAAATCGAGGGCTCCAGTGCGGACGACGATGACGACGGTTATTGATAACTTCTTTGTCTTACTTCTTAAATTTCCAAAATCCAAA</canonical>
            <polymorphic>TAGGTGCTCTTCTTCGGACCCAAAATCTGAGGCATGCTCGTAAAATAGGCGGAGCCAATAGTAATTGGGAGGGTGGAGCTTCTACTTGATTGAAAGGGGAGCTTTATCAGTTTATTTCACCTAGCTCAGACAAAAATGCTCTCCAATAGAGGATGGTTTGTGAATTGCCTCTGTCTATCTTTCTGTGTCTTTCTCATTCTAGGAAGTATGTTTAAGAATAGTTAGATTACCAATTAATCATTTTCAATACTTAAGTCTATGAAGAATACGGTAAATGGGAGAAATCAGAATCCGAGCAGCAAGTTTTGCCGAAATTGACAGCCATTAAACGCACCATGCTTGTTGGCATCAGTGAATCTACTGAGCAAGTCTGTGAGAGCACCATTTTCAAGGACAACATCCCACATTATGGGCACTGTAAGGATATATTCTGTCTTATTAATCAGTTCAATAATAAGAATTTCAGTGCTCAACGGGAGTTACGTGGAAATCCTGCAAASTTCCGATTATCGCTTTGTAAAGACGTATGTCAAGTGCTCGAAGGATGACAGACCATCATGTGTTGGAATCCAATCTCGGTAAGTTATTAATTCCAGTGTGAAAAGTTTGAATCTCGAAGTTTTCATAATTCAATAGTTTTTGATAATTTTCAAGATTTCACAATTCAGAAATGTTAGGGTTGCGAGAATTTTTTTCTAAGCTAAGAATCTTCCAGCTATATCAGCGAATGCGTAACCGTCTATGAAAGTGTCCCAGCCATGATTCGCCTTCTTCACAACTACGGACCATTCCAGATGAACTTCATTAGAGTAAGTTGAATATTTTTGAGGATCATCTTTAATCCAGAAGCCTGTATTTTTCCAGGTGCCAATATTCTGTGAATGCCGGTTGAGACGCCAATACAGACACTTCGAGAAAATCGAGGGCTCCAGTGCGGACGACGATGACGACGGTTATTGATAACTTCTTTGTCTTACTTCTTAAATTTCCAAAATCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTGAATCTACTGAGCAAGTCT</pcr_primer_p1>
		<pcr_primer_p2>CTGGAATTAATAACTTACCGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAGTGAATCTACTGAGCAAGTCTGTGAGAGCACCATTTTCAAGGACAACATCCCACATTATGGGCACTGTAAGGATATATTCTGTCTTATTAATCAGTTCAATAATAAGAATTTCAGTGCTCAACGGGAGTTACGTGGAAATCCTGCAAACTTCCGATTATCGCTTTGTAAAGACGTATGTCAAGTGCTCGAAGGATGACAGACCATCATGTGTTGGAATCCAATCTCGGTAAGTTATTAATTCCAG</canonical_amplicon>
		<polymorphic_amplicon>CAGTGAATCTACTGAGCAAGTCTGTGAGAGCACCATTTTCAAGGACAACATCCCACATTATGGGCACTGTAAGGATATATTCTGTCTTATTAATCAGTTCAATAATAAGAATTTCAGTGCTCAACGGGAGTTACGTGGAAATCCTGCAAASTTCCGATTATCGCTTTGTAAAGACGTATGTCAAGTGCTCGAAGGATGACAGACCATCATGTGTTGGAATCCAATCTCGGTAAGTTATTAATTCCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21234</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>329060</contig_pos>
        <strand>+</strand>
        <context>GAATAATGCG[C/T]CTTTTAGGKA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATGTTCCTATTCTGTTGTATACAAGTTCCAAACTGTAAGAATAATGCG</left_flank>
        <right_flank>CTTTTAGGCAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAA</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTCAAAAAGAAGGAAAATCGAGGTGATGCGGCGGAGCACCACATCCAGTAATTCCGGATTCATTTCGAATCTGGTCGACGTTTTGTCCAATACCACACGAGTCTTACAGGTTAGCCTAAGATATTTCTGTAATTTTGATGGAAAATAAAGTTTCCACTTCTTTACCCATTGCGACGCTAAACTAATCTAATAAGCTTCAGTTTGATCTTCCTGTAGAAGTTATTCAAGTTCACCCAATTCTTAGAGGTAGTATGAAAAGTACGGTTATCAGAAACTTTTGAGTGTTAAAGCAATAATGGTTGTAAAACTGATAAGCGGCCGCCTCAAAGGCTTTGAAATTAGTAGCGTTGCATTTTAGAAAAAGGGGTATTGTTGTTATTGTTTGCATTTGCTTTTATGGCACCGTCAGTATTCCTCAGTCCTATTTGCCATATTCGACTCTACTCAAAATGTTCCTATTCTGTTGTATACAAGTTCCAAACTGTAAGAATAATGCGTCTTTTAGGCAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTTAAAGTTTTCGGAACCTCCAAATCTTATATCCTGGGGATTCCAAAACCTCAGAATTTCAGAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAAT</canonical>
            <polymorphic>AAGTCAAAAAGAAGGAAAATCGAGGTGATGCGGCGGAGCACCACATCCAGTAATTCCGGATTCATTTCGAATCTGGTCGACGTTTTGTCCAATACCACACGAGTCTTACAGGTTAGCCTAAGATATTTCTGTAATTTTGATGGAAAATAAAGTTTCCACTTCTTTACCCATTGCGACGCTAAACTAATCTAATAAGCTTCAGTTTGATCTTCCTGTAGAAGTTATTCAAGTTCACCCAATTCTTAGAGGTAGTATGAAAAGTACGGTTATCAGAAACTTTTGAGTGTTAAAGCAATAATGGTTGTAAAACTGATAAGCGGCCGCCTCAAAGGCTTTGAAATTAGTAGCGTTGCATTTTAGAAAAAGGGGTATTGTTGTTATTGTTTGCATTTGCTTTTATGGCACCGTCAGTATTCCTCAGTCCTATTTGCCATATTCGACTCTACTCAAAATGTTCCTATTCTGTTGTATACAAGTTCCAAACTGTAAGAATAATGCGYCTTTTAGGCAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTTAAAGTTTTCGGAACCTCCAAATCTTATATCCTGGGGATTCCAAAACCTCAGAATTTCAGAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTGTTTGCATTTGCTTTTAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATACCTGAACCACAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTATTGTTTGCATTTGCTTTTATGGCACCGTCAGTATTCCTCAGTCCTATTTGCCATATTCGACTCTACTCAAAATGTTCCTATTCTGTTGTATACAAGTTCCAAACTGTAAGAATAATGCGTCTTTTAGGCAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTATTGTTTGCATTTGCTTTTATGGCACCGTCAGTATTCCTCAGTCCTATTTGCCATATTCGACTCTACTCAAAATGTTCCTATTCTGTTGTATACAAGTTCCAAACTGTAAGAATAATGCGYCTTTTAGGCAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21235</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>329161</contig_pos>
        <strand>+</strand>
        <context>GCAAAATCAT[A/T]AAAAACTGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCAT</left_flank>
        <right_flank>AAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTG</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTCTTACAGGTTAGCCTAAGATATTTCTGTAATTTTGATGGAAAATAAAGTTTCCACTTCTTTACCCATTGCGACGCTAAACTAATCTAATAAGCTTCAGTTTGATCTTCCTGTAGAAGTTATTCAAGTTCACCCAATTCTTAGAGGTAGTATGAAAAGTACGGTTATCAGAAACTTTTGAGTGTTAAAGCAATAATGGTTGTAAAACTGATAAGCGGCCGCCTCAAAGGCTTTGAAATTAGTAGCGTTGCATTTTAGAAAAAGGGGTATTGTTGTTATTGTTTGCATTTGCTTTTATGGCACCGTCAGTATTCCTCAGTCCTATTTGCCATATTCGACTCTACTCAAAATGTTCCTATTCTGTTGTATACAAGTTCCAAACTGTAAGAATAATGCGTCTTTTAGGCAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTTAAAGTTTTCGGAACCTCCAAATCTTATATCCTGGGGATTCCAAAACCTCAGAATTTCAGAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTTCAAAATCTTAG</canonical>
            <polymorphic>AGTCTTACAGGTTAGCCTAAGATATTTCTGTAATTTTGATGGAAAATAAAGTTTCCACTTCTTTACCCATTGCGACGCTAAACTAATCTAATAAGCTTCAGTTTGATCTTCCTGTAGAAGTTATTCAAGTTCACCCAATTCTTAGAGGTAGTATGAAAAGTACGGTTATCAGAAACTTTTGAGTGTTAAAGCAATAATGGTTGTAAAACTGATAAGCGGCCGCCTCAAAGGCTTTGAAATTAGTAGCGTTGCATTTTAGAAAAAGGGGTATTGTTGTTATTGTTTGCATTTGCTTTTATGGCACCGTCAGTATTCCTCAGTCCTATTTGCCATATTCGACTCTACTCAAAATGTTCCTATTCTGTTGTATACAAGTTCCAAACTGTAAGAATAATGCGTCTTTTAGGCAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCATWAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTTAAAGTTTTCGGAACCTCCAAATCTTATATCCTGGGGATTCCAAAACCTCAGAATTTCAGAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTTCAAAATCTTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>313 186 152 130 96 84 39</canonical_bands>
                <polymorphic_bands>409 186 152 130 84 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAAATGTTCCTATTCTGTTGT</pcr_primer_p1>
		<pcr_primer_p2>TAAAATGGAATTTCTGCTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCAAAATGTTCCTATTCTGTTGTATACAAGTTCCAAACTGTAAGAATAATGCGTCTTTTAGGCAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTA</canonical_amplicon>
		<polymorphic_amplicon>TCAAAATGTTCCTATTCTGTTGTATACAAGTTCCAAACTGTAAGAATAATGCGTCTTTTAGGCAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCATWAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21236</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>329226</contig_pos>
        <strand>+</strand>
        <context>AAATAGAGAA[A/C]AATGGGTCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAA</left_flank>
        <right_flank>AATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCATTGCGACGCTAAACTAATCTAATAAGCTTCAGTTTGATCTTCCTGTAGAAGTTATTCAAGTTCACCCAATTCTTAGAGGTAGTATGAAAAGTACGGTTATCAGAAACTTTTGAGTGTTAAAGCAATAATGGTTGTAAAACTGATAAGCGGCCGCCTCAAAGGCTTTGAAATTAGTAGCGTTGCATTTTAGAAAAAGGGGTATTGTTGTTATTGTTTGCATTTGCTTTTATGGCACCGTCAGTATTCCTCAGTCCTATTTGCCATATTCGACTCTACTCAAAATGTTCCTATTCTGTTGTATACAAGTTCCAAACTGTAAGAATAATGCGTCTTTTAGGCAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTTAAAGTTTTCGGAACCTCCAAATCTTATATCCTGGGGATTCCAAAACCTCAGAATTTCAGAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAATTTCAAAATCTTGAAATCTCACAATCTTTTAATCTTGGTATCCCAAA</canonical>
            <polymorphic>CCCATTGCGACGCTAAACTAATCTAATAAGCTTCAGTTTGATCTTCCTGTAGAAGTTATTCAAGTTCACCCAATTCTTAGAGGTAGTATGAAAAGTACGGTTATCAGAAACTTTTGAGTGTTAAAGCAATAATGGTTGTAAAACTGATAAGCGGCCGCCTCAAAGGCTTTGAAATTAGTAGCGTTGCATTTTAGAAAAAGGGGTATTGTTGTTATTGTTTGCATTTGCTTTTATGGCACCGTCAGTATTCCTCAGTCCTATTTGCCATATTCGACTCTACTCAAAATGTTCCTATTCTGTTGTATACAAGTTCCAAACTGTAAGAATAATGCGTCTTTTAGGCAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAAMAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTTAAAGTTTTCGGAACCTCCAAATCTTATATCCTGGGGATTCCAAAACCTCAGAATTTCAGAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAATTTCAAAATCTTGAAATCTCACAATCTTTTAATCTTGGTATCCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTGTGGTTCAGGTATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATTCTAAGTTTCCGAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTT</canonical_amplicon>
		<polymorphic_amplicon>AAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAAMAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21237</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>331945</contig_pos>
        <strand>+</strand>
        <context>TTTAATTCAA[A/T]TAGTTTCTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTTGACAAAAACAAAAATCATGTTTTCGAAAGAAATTACTTTAATTCAA</left_flank>
        <right_flank>TAGTTTCTTTCAATTTTCAGCATAAAACTGTGGTAAGTACCGTAGCCAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGACTAGTCTGTTTTCTGGGCGGAAGCGGAAGGAATAGGATGGGAGGAGGAGACGAAATGTGTAAATCCTAGCAACACATAGTCACTCATCCACACTCAATCGCACTTGGTTTTCTTTTTTCTCATAAGGACGCATAATTGTGTTGGGCATGACCGCGTTGCCAACCGTAACTTCTTGTCCTATTGTTACACACCTATTTTTCCCTTTTCTCACACTTATTTTTGTATTTTTTGGGAGAAATGAACGAGAAACGGGAGAATGAGACAGAAAGAAAACGTTTTTTTTGGGGTTGGTTTCATTTCGGCAACACAATCTCTTCTTCTCTCGCTTTTTATATTTCGATTCTGCACTTCGGCAAATAACACGATACCTTAGAGACCCATTTAACCTATTTCGCGCGTTCACTGTTTTTATATTTCAAAATTTACCCCAGAAATTTGTCCAGAAACTTGACAAAAACAAAAATCATGTTTTCGAAAGAAATTACTTTAATTCAAATAGTTTCTTTCAATTTTCAGCATAAAACTGTGGTAAGTACCGTAGCCAATCCAAAAAATCGAACTTTGCTCTTAGCGTTGAATAAATTTGAACACTAGGAGAAATCTTTTCAAAAATTTACGTAGGCCAATTTTTTCCGCCAAATGGTATAATTTTTTGAGCCATTTTCTCCAGGTTTCTCTGATTCTTTGAATCATATTTTTCTAAAAACGAACTATTCCATAGCTGTTTACTACACCCTAATTTTTAAGAAAGCTGTCACTTTTCACACTCTCATCCTTTTCTTTGTTTTCCTTTATGTTTATAAACAAGCGCTTCCTTTTCCTTGGGACGATTCCCATTAGTATAATGGCTTTTCTCTAATATAATATGCATTGGATGACATAAAGAACTCATTCCTTTCTTGCTGACCTTTTTGTTCCGAGGAAAATTACTCGATTTCCGCTTTCGAGAACGTTTTCGAGAATATAGGCGTATAGGGTCATTTCTTCAAATTTTAT</canonical>
            <polymorphic>TTGACTAGTCTGTTTTCTGGGCGGAAGCGGAAGGAATAGGATGGGAGGAGGAGACGAAATGTGTAAATCCTAGCAACACATAGTCACTCATCCACACTCAATCGCACTTGGTTTTCTTTTTTCTCATAAGGACGCATAATTGTGTTGGGCATGACCGCGTTGCCAACCGTAACTTCTTGTCCTATTGTTACACACCTATTTTTCCCTTTTCTCACACTTATTTTTGTATTTTTTGGGAGAAATGAACGAGAAACGGGAGAATGAGACAGAAAGAAAACGTTTTTTTTGGGGTTGGTTTCATTTCGGCAACACAATCTCTTCTTCTCTCGCTTTTTATATTTCGATTCTGCACTTCGGCAAATAACACGATACCTTAGAGACCCATTTAACCTATTTCGCGCGTTCACTGTTTTTATATTTCAAAATTTACCCCAGAAATTTGTCCAGAAACTTGACAAAAACAAAAATCATGTTTTCGAAAGAAATTACTTTAATTCAAWTAGTTTCTTTCAATTTTCAGCATAAAACTGTGGTAAGTACCGTAGCCAATCCAAAAAATCGAACTTTGCTCTTAGCGTTGAATAAATTTGAACACTAGGAGAAATCTTTTCAAAAATTTACGTAGGCCAATTTTTTCCGCCAAATGGTATAATTTTTTGAGCCATTTTCTCCAGGTTTCTCTGATTCTTTGAATCATATTTTTCTAAAAACGAACTATTCCATAGCTGTTTACTACACCCTAATTTTTAAGAAAGCTGTCACTTTTCACACTCTCATCCTTTTCTTTGTTTTCCTTTATGTTTATAAACAAGCGCTTCCTTTTCCTTGGGACGATTCCCATTAGTATAATGGCTTTTCTCTAATATAATATGCATTGGATGACATAAAGAACTCATTCCTTTCTTGCTGACCTTTTTGTTCCGAGGAAAATTACTCGATTTCCGCTTTCGAGAACGTTTTCGAGAATATAGGCGTATAGGGTCATTTCTTCAAATTTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACTTGACAAAAACAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>GATTCAAAGAATCAGAGAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAACTTGACAAAAACAAAAATCATGTTTTCGAAAGAAATTACTTTAATTCAAATAGTTTCTTTCAATTTTCAGCATAAAACTGTGGTAAGTACCGTAGCCAATCCAAAAAATCGAACTTTGCTCTTAGCGTTGAATAAATTTGAACACTAGGAGAAATCTTTTCAAAAATTTACGTAGGCCAATTTTTTCCGCCAAATGGTATAATTTTTTGAGCCATTTTCTCCAGGTTTCTCTGATTCTTTGAATC</canonical_amplicon>
		<polymorphic_amplicon>GAAACTTGACAAAAACAAAAATCATGTTTTCGAAAGAAATTACTTTAATTCAAWTAGTTTCTTTCAATTTTCAGCATAAAACTGTGGTAAGTACCGTAGCCAATCCAAAAAATCGAACTTTGCTCTTAGCGTTGAATAAATTTGAACACTAGGAGAAATCTTTTCAAAAATTTACGTAGGCCAATTTTTTCCGCCAAATGGTATAATTTTTTGAGCCATTTTCTCCAGGTTTCTCTGATTCTTTGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21238</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>331923</contig_pos>
        <strand>+</strand>
        <context>TCATGTTTTC[A/G]AAAGAAATTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACCCCAGAAATTTGTCCAGAAACTTGACAAAAACAAAAATCATGTTTTC</left_flank>
        <right_flank>AAAGAAATTACTTTAATTCAAATAGTTTCTTTCAATTTTCAGCATAAAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCCTGTATATTCATTTTTTCTTGACTAGTCTGTTTTCTGGGCGGAAGCGGAAGGAATAGGATGGGAGGAGGAGACGAAATGTGTAAATCCTAGCAACACATAGTCACTCATCCACACTCAATCGCACTTGGTTTTCTTTTTTCTCATAAGGACGCATAATTGTGTTGGGCATGACCGCGTTGCCAACCGTAACTTCTTGTCCTATTGTTACACACCTATTTTTCCCTTTTCTCACACTTATTTTTGTATTTTTTGGGAGAAATGAACGAGAAACGGGAGAATGAGACAGAAAGAAAACGTTTTTTTTGGGGTTGGTTTCATTTCGGCAACACAATCTCTTCTTCTCTCGCTTTTTATATTTCGATTCTGCACTTCGGCAAATAACACGATACCTTAGAGACCCATTTAACCTATTTCGCGCGTTCACTGTTTTTATATTTCAAAATTTACCCCAGAAATTTGTCCAGAAACTTGACAAAAACAAAAATCATGTTTTCGAAAGAAATTACTTTAATTCAAATAGTTTCTTTCAATTTTCAGCATAAAACTGTGGTAAGTACCGTAGCCAATCCAAAAAATCGAACTTTGCTCTTAGCGTTGAATAAATTTGAACACTAGGAGAAATCTTTTCAAAAATTTACGTAGGCCAATTTTTTCCGCCAAATGGTATAATTTTTTGAGCCATTTTCTCCAGGTTTCTCTGATTCTTTGAATCATATTTTTCTAAAAACGAACTATTCCATAGCTGTTTACTACACCCTAATTTTTAAGAAAGCTGTCACTTTTCACACTCTCATCCTTTTCTTTGTTTTCCTTTATGTTTATAAACAAGCGCTTCCTTTTCCTTGGGACGATTCCCATTAGTATAATGGCTTTTCTCTAATATAATATGCATTGGATGACATAAAGAACTCATTCCTTTCTTGCTGACCTTTTTGTTCCGAGGAAAATTACTCGATTTCCGCTTTCGAGAACGTTTTCGAGAATATAGGCGTATA</canonical>
            <polymorphic>TCTCCTGTATATTCATTTTTTCTTGACTAGTCTGTTTTCTGGGCGGAAGCGGAAGGAATAGGATGGGAGGAGGAGACGAAATGTGTAAATCCTAGCAACACATAGTCACTCATCCACACTCAATCGCACTTGGTTTTCTTTTTTCTCATAAGGACGCATAATTGTGTTGGGCATGACCGCGTTGCCAACCGTAACTTCTTGTCCTATTGTTACACACCTATTTTTCCCTTTTCTCACACTTATTTTTGTATTTTTTGGGAGAAATGAACGAGAAACGGGAGAATGAGACAGAAAGAAAACGTTTTTTTTGGGGTTGGTTTCATTTCGGCAACACAATCTCTTCTTCTCTCGCTTTTTATATTTCGATTCTGCACTTCGGCAAATAACACGATACCTTAGAGACCCATTTAACCTATTTCGCGCGTTCACTGTTTTTATATTTCAAAATTTACCCCAGAAATTTGTCCAGAAACTTGACAAAAACAAAAATCATGTTTTCRAAAGAAATTACTTTAATTCAAATAGTTTCTTTCAATTTTCAGCATAAAACTGTGGTAAGTACCGTAGCCAATCCAAAAAATCGAACTTTGCTCTTAGCGTTGAATAAATTTGAACACTAGGAGAAATCTTTTCAAAAATTTACGTAGGCCAATTTTTTCCGCCAAATGGTATAATTTTTTGAGCCATTTTCTCCAGGTTTCTCTGATTCTTTGAATCATATTTTTCTAAAAACGAACTATTCCATAGCTGTTTACTACACCCTAATTTTTAAGAAAGCTGTCACTTTTCACACTCTCATCCTTTTCTTTGTTTTCCTTTATGTTTATAAACAAGCGCTTCCTTTTCCTTGGGACGATTCCCATTAGTATAATGGCTTTTCTCTAATATAATATGCATTGGATGACATAAAGAACTCATTCCTTTCTTGCTGACCTTTTTGTTCCGAGGAAAATTACTCGATTTCCGCTTTCGAGAACGTTTTCGAGAATATAGGCGTATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>376 364 135 83 17 13 12</canonical_bands>
                <polymorphic_bands>376 364 218 17 13 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAAATAACACGATACCTTAGAG</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCCTAGTGTTCAAATTTATTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCAAATAACACGATACCTTAGAGACCCATTTAACCTATTTCGCGCGTTCACTGTTTTTATATTTCAAAATTTACCCCAGAAATTTGTCCAGAAACTTGACAAAAACAAAAATCATGTTTTCGAAAGAAATTACTTTAATTCAAATAGTTTCTTTCAATTTTCAGCATAAAACTGTGGTAAGTACCGTAGCCAATCCAAAAAATCGAACTTTGCTCTTAGCGTTGAATAAATTTGAACACTAGGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>GCAAATAACACGATACCTTAGAGACCCATTTAACCTATTTCGCGCGTTCACTGTTTTTATATTTCAAAATTTACCCCAGAAATTTGTCCAGAAACTTGACAAAAACAAAAATCATGTTTTCRAAAGAAATTACTTTAATTCAAATAGTTTCTTTCAATTTTCAGCATAAAACTGTGGTAAGTACCGTAGCCAATCCAAAAAATCGAACTTTGCTCTTAGCGTTGAATAAATTTGAACACTAGGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21239</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>331831</contig_pos>
        <strand>+</strand>
        <context>AGAGACCCAT[A/T]TAACCTATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATATTTCGATTCTGCACTTCGGCAAATAACACGATACCTTAGAGACCCAT</left_flank>
        <right_flank>TAACCTATTTCGCGCGTTCACTGTTTTTATATTTCAAAATTTACCCCAGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTCAACGCCTATTTTTTCACGCATCCGCCTACATTATCTCAACTTTGTCACTTTTCCTTTCGGCATTTTCCTTGTCGACGTCTTCTTGTTTTCTCCTGTATATTCATTTTTTCTTGACTAGTCTGTTTTCTGGGCGGAAGCGGAAGGAATAGGATGGGAGGAGGAGACGAAATGTGTAAATCCTAGCAACACATAGTCACTCATCCACACTCAATCGCACTTGGTTTTCTTTTTTCTCATAAGGACGCATAATTGTGTTGGGCATGACCGCGTTGCCAACCGTAACTTCTTGTCCTATTGTTACACACCTATTTTTCCCTTTTCTCACACTTATTTTTGTATTTTTTGGGAGAAATGAACGAGAAACGGGAGAATGAGACAGAAAGAAAACGTTTTTTTTGGGGTTGGTTTCATTTCGGCAACACAATCTCTTCTTCTCTCGCTTTTTATATTTCGATTCTGCACTTCGGCAAATAACACGATACCTTAGAGACCCATTTAACCTATTTCGCGCGTTCACTGTTTTTATATTTCAAAATTTACCCCAGAAATTTGTCCAGAAACTTGACAAAAACAAAAATCATGTTTTCGAAAGAAATTACTTTAATTCAAATAGTTTCTTTCAATTTTCAGCATAAAACTGTGGTAAGTACCGTAGCCAATCCAAAAAATCGAACTTTGCTCTTAGCGTTGAATAAATTTGAACACTAGGAGAAATCTTTTCAAAAATTTACGTAGGCCAATTTTTTCCGCCAAATGGTATAATTTTTTGAGCCATTTTCTCCAGGTTTCTCTGATTCTTTGAATCATATTTTTCTAAAAACGAACTATTCCATAGCTGTTTACTACACCCTAATTTTTAAGAAAGCTGTCACTTTTCACACTCTCATCCTTTTCTTTGTTTTCCTTTATGTTTATAAACAAGCGCTTCCTTTTCCTTGGGACGATTCCCATTAGTATAATGGCTTTTCTCTAATATAATATGCATTGGATGACATA</canonical>
            <polymorphic>CCTCAACGCCTATTTTTTCACGCATCCGCCTACATTATCTCAACTTTGTCACTTTTCCTTTCGGCATTTTCCTTGTCGACGTCTTCTTGTTTTCTCCTGTATATTCATTTTTTCTTGACTAGTCTGTTTTCTGGGCGGAAGCGGAAGGAATAGGATGGGAGGAGGAGACGAAATGTGTAAATCCTAGCAACACATAGTCACTCATCCACACTCAATCGCACTTGGTTTTCTTTTTTCTCATAAGGACGCATAATTGTGTTGGGCATGACCGCGTTGCCAACCGTAACTTCTTGTCCTATTGTTACACACCTATTTTTCCCTTTTCTCACACTTATTTTTGTATTTTTTGGGAGAAATGAACGAGAAACGGGAGAATGAGACAGAAAGAAAACGTTTTTTTTGGGGTTGGTTTCATTTCGGCAACACAATCTCTTCTTCTCTCGCTTTTTATATTTCGATTCTGCACTTCGGCAAATAACACGATACCTTAGAGACCCATWTAACCTATTTCGCGCGTTCACTGTTTTTATATTTCAAAATTTACCCCAGAAATTTGTCCAGAAACTTGACAAAAACAAAAATCATGTTTTCGAAAGAAATTACTTTAATTCAAATAGTTTCTTTCAATTTTCAGCATAAAACTGTGGTAAGTACCGTAGCCAATCCAAAAAATCGAACTTTGCTCTTAGCGTTGAATAAATTTGAACACTAGGAGAAATCTTTTCAAAAATTTACGTAGGCCAATTTTTTCCGCCAAATGGTATAATTTTTTGAGCCATTTTCTCCAGGTTTCTCTGATTCTTTGAATCATATTTTTCTAAAAACGAACTATTCCATAGCTGTTTACTACACCCTAATTTTTAAGAAAGCTGTCACTTTTCACACTCTCATCCTTTTCTTTGTTTTCCTTTATGTTTATAAACAAGCGCTTCCTTTTCCTTGGGACGATTCCCATTAGTATAATGGCTTTTCTCTAATATAATATGCATTGGATGACATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>500 256 139 105</canonical_bands>
                <polymorphic_bands>605 256 139</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTATATTTCGATTCTGCACTTC</pcr_primer_p1>
		<pcr_primer_p2>TATTCAACGCTAAGAGCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTATATTTCGATTCTGCACTTCGGCAAATAACACGATACCTTAGAGACCCATTTAACCTATTTCGCGCGTTCACTGTTTTTATATTTCAAAATTTACCCCAGAAATTTGTCCAGAAACTTGACAAAAACAAAAATCATGTTTTCGAAAGAAATTACTTTAATTCAAATAGTTTCTTTCAATTTTCAGCATAAAACTGTGGTAAGTACCGTAGCCAATCCAAAAAATCGAACTTTGCTCTTAGCGTTGAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTATATTTCGATTCTGCACTTCGGCAAATAACACGATACCTTAGAGACCCATWTAACCTATTTCGCGCGTTCACTGTTTTTATATTTCAAAATTTACCCCAGAAATTTGTCCAGAAACTTGACAAAAACAAAAATCATGTTTTCGAAAGAAATTACTTTAATTCAAATAGTTTCTTTCAATTTTCAGCATAAAACTGTGGTAAGTACCGTAGCCAATCCAAAAAATCGAACTTTGCTCTTAGCGTTGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21240</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>331712</contig_pos>
        <strand>+</strand>
        <context>GAGAATGAGA[A/C]AGAAAGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTATTTTTGTATTTTTTGGGAGAAATGAACGAGAAACGGGAGAATGAGA</left_flank>
        <right_flank>AGAAAGAAAACGTTTTTTTTGGGGTTGGTTTCATTTCGGCAACACAATCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTGCTGGTTTATTCACACATCTGGCATAAAGGGTCCCTCTCAACCCCCAACCAATTGCCCTCTGCCATCCCTATCCGCCACCCGCACCCCAACTACACCACATTCCACTCATTTCCTCAACGCCTATTTTTTCACGCATCCGCCTACATTATCTCAACTTTGTCACTTTTCCTTTCGGCATTTTCCTTGTCGACGTCTTCTTGTTTTCTCCTGTATATTCATTTTTTCTTGACTAGTCTGTTTTCTGGGCGGAAGCGGAAGGAATAGGATGGGAGGAGGAGACGAAATGTGTAAATCCTAGCAACACATAGTCACTCATCCACACTCAATCGCACTTGGTTTTCTTTTTTCTCATAAGGACGCATAATTGTGTTGGGCATGACCGCGTTGCCAACCGTAACTTCTTGTCCTATTGTTACACACCTATTTTTCCCTTTTCTCACACTTATTTTTGTATTTTTTGGGAGAAATGAACGAGAAACGGGAGAATGAGACAGAAAGAAAACGTTTTTTTTGGGGTTGGTTTCATTTCGGCAACACAATCTCTTCTTCTCTCGCTTTTTATATTTCGATTCTGCACTTCGGCAAATAACACGATACCTTAGAGACCCATTTAACCTATTTCGCGCGTTCACTGTTTTTATATTTCAAAATTTACCCCAGAAATTTGTCCAGAAACTTGACAAAAACAAAAATCATGTTTTCGAAAGAAATTACTTTAATTCAAATAGTTTCTTTCAATTTTCAGCATAAAACTGTGGTAAGTACCGTAGCCAATCCAAAAAATCGAACTTTGCTCTTAGCGTTGAATAAATTTGAACACTAGGAGAAATCTTTTCAAAAATTTACGTAGGCCAATTTTTTCCGCCAAATGGTATAATTTTTTGAGCCATTTTCTCCAGGTTTCTCTGATTCTTTGAATCATATTTTTCTAAAAACGAACTATTCCATAGCTGTTTACTACACCCTAATTTTTAAGAAAGCTGTCACTTTTC</canonical>
            <polymorphic>TTTTTTTGCTGGTTTATTCACACATCTGGCATAAAGGGTCCCTCTCAACCCCCAACCAATTGCCCTCTGCCATCCCTATCCGCCACCCGCACCCCAACTACACCACATTCCACTCATTTCCTCAACGCCTATTTTTTCACGCATCCGCCTACATTATCTCAACTTTGTCACTTTTCCTTTCGGCATTTTCCTTGTCGACGTCTTCTTGTTTTCTCCTGTATATTCATTTTTTCTTGACTAGTCTGTTTTCTGGGCGGAAGCGGAAGGAATAGGATGGGAGGAGGAGACGAAATGTGTAAATCCTAGCAACACATAGTCACTCATCCACACTCAATCGCACTTGGTTTTCTTTTTTCTCATAAGGACGCATAATTGTGTTGGGCATGACCGCGTTGCCAACCGTAACTTCTTGTCCTATTGTTACACACCTATTTTTCCCTTTTCTCACACTTATTTTTGTATTTTTTGGGAGAAATGAACGAGAAACGGGAGAATGAGAMAGAAAGAAAACGTTTTTTTTGGGGTTGGTTTCATTTCGGCAACACAATCTCTTCTTCTCTCGCTTTTTATATTTCGATTCTGCACTTCGGCAAATAACACGATACCTTAGAGACCCATTTAACCTATTTCGCGCGTTCACTGTTTTTATATTTCAAAATTTACCCCAGAAATTTGTCCAGAAACTTGACAAAAACAAAAATCATGTTTTCGAAAGAAATTACTTTAATTCAAATAGTTTCTTTCAATTTTCAGCATAAAACTGTGGTAAGTACCGTAGCCAATCCAAAAAATCGAACTTTGCTCTTAGCGTTGAATAAATTTGAACACTAGGAGAAATCTTTTCAAAAATTTACGTAGGCCAATTTTTTCCGCCAAATGGTATAATTTTTTGAGCCATTTTCTCCAGGTTTCTCTGATTCTTTGAATCATATTTTTCTAAAAACGAACTATTCCATAGCTGTTTACTACACCCTAATTTTTAAGAAAGCTGTCACTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGTCACTCATCCACACTCAA</pcr_primer_p1>
		<pcr_primer_p2>CGAGAGAAGAAGAGATTGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAGTCACTCATCCACACTCAATCGCACTTGGTTTTCTTTTTTCTCATAAGGACGCATAATTGTGTTGGGCATGACCGCGTTGCCAACCGTAACTTCTTGTCCTATTGTTACACACCTATTTTTCCCTTTTCTCACACTTATTTTTGTATTTTTTGGGAGAAATGAACGAGAAACGGGAGAATGAGACAGAAAGAAAACGTTTTTTTTGGGGTTGGTTTCATTTCGGCAACACAATCTCTTCTTCTCTCG</canonical_amplicon>
		<polymorphic_amplicon>ATAGTCACTCATCCACACTCAATCGCACTTGGTTTTCTTTTTTCTCATAAGGACGCATAATTGTGTTGGGCATGACCGCGTTGCCAACCGTAACTTCTTGTCCTATTGTTACACACCTATTTTTCCCTTTTCTCACACTTATTTTTGTATTTTTTGGGAGAAATGAACGAGAAACGGGAGAATGAGAMAGAAAGAAAACGTTTTTTTTGGGGTTGGTTTCATTTCGGCAACACAATCTCTTCTTCTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21241</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>331652</contig_pos>
        <strand>+</strand>
        <context>TATTTTTCCC[A/T]TTTCTCACAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCGTTGCCAACCGTAACTTCTTGTCCTATTGTTACACACCTATTTTTCCC</left_flank>
        <right_flank>TTTCTCACACTTATTTTTGTATTTTTTGGGAGAAATGAACGAGAAACGGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGAAGAAAACCAAAGAGCCTGACCACCACCAAACGTTCATTTTCTGCTTTCTCTTCTCTTTTTTTGCTGGTTTATTCACACATCTGGCATAAAGGGTCCCTCTCAACCCCCAACCAATTGCCCTCTGCCATCCCTATCCGCCACCCGCACCCCAACTACACCACATTCCACTCATTTCCTCAACGCCTATTTTTTCACGCATCCGCCTACATTATCTCAACTTTGTCACTTTTCCTTTCGGCATTTTCCTTGTCGACGTCTTCTTGTTTTCTCCTGTATATTCATTTTTTCTTGACTAGTCTGTTTTCTGGGCGGAAGCGGAAGGAATAGGATGGGAGGAGGAGACGAAATGTGTAAATCCTAGCAACACATAGTCACTCATCCACACTCAATCGCACTTGGTTTTCTTTTTTCTCATAAGGACGCATAATTGTGTTGGGCATGACCGCGTTGCCAACCGTAACTTCTTGTCCTATTGTTACACACCTATTTTTCCCTTTTCTCACACTTATTTTTGTATTTTTTGGGAGAAATGAACGAGAAACGGGAGAATGAGACAGAAAGAAAACGTTTTTTTTGGGGTTGGTTTCATTTCGGCAACACAATCTCTTCTTCTCTCGCTTTTTATATTTCGATTCTGCACTTCGGCAAATAACACGATACCTTAGAGACCCATTTAACCTATTTCGCGCGTTCACTGTTTTTATATTTCAAAATTTACCCCAGAAATTTGTCCAGAAACTTGACAAAAACAAAAATCATGTTTTCGAAAGAAATTACTTTAATTCAAATAGTTTCTTTCAATTTTCAGCATAAAACTGTGGTAAGTACCGTAGCCAATCCAAAAAATCGAACTTTGCTCTTAGCGTTGAATAAATTTGAACACTAGGAGAAATCTTTTCAAAAATTTACGTAGGCCAATTTTTTCCGCCAAATGGTATAATTTTTTGAGCCATTTTCTCCAGGTTTCTCTGATTCTTTGAATCATATTTTTCTAA</canonical>
            <polymorphic>AATGAAGAAAACCAAAGAGCCTGACCACCACCAAACGTTCATTTTCTGCTTTCTCTTCTCTTTTTTTGCTGGTTTATTCACACATCTGGCATAAAGGGTCCCTCTCAACCCCCAACCAATTGCCCTCTGCCATCCCTATCCGCCACCCGCACCCCAACTACACCACATTCCACTCATTTCCTCAACGCCTATTTTTTCACGCATCCGCCTACATTATCTCAACTTTGTCACTTTTCCTTTCGGCATTTTCCTTGTCGACGTCTTCTTGTTTTCTCCTGTATATTCATTTTTTCTTGACTAGTCTGTTTTCTGGGCGGAAGCGGAAGGAATAGGATGGGAGGAGGAGACGAAATGTGTAAATCCTAGCAACACATAGTCACTCATCCACACTCAATCGCACTTGGTTTTCTTTTTTCTCATAAGGACGCATAATTGTGTTGGGCATGACCGCGTTGCCAACCGTAACTTCTTGTCCTATTGTTACACACCTATTTTTCCCWTTTCTCACACTTATTTTTGTATTTTTTGGGAGAAATGAACGAGAAACGGGAGAATGAGACAGAAAGAAAACGTTTTTTTTGGGGTTGGTTTCATTTCGGCAACACAATCTCTTCTTCTCTCGCTTTTTATATTTCGATTCTGCACTTCGGCAAATAACACGATACCTTAGAGACCCATTTAACCTATTTCGCGCGTTCACTGTTTTTATATTTCAAAATTTACCCCAGAAATTTGTCCAGAAACTTGACAAAAACAAAAATCATGTTTTCGAAAGAAATTACTTTAATTCAAATAGTTTCTTTCAATTTTCAGCATAAAACTGTGGTAAGTACCGTAGCCAATCCAAAAAATCGAACTTTGCTCTTAGCGTTGAATAAATTTGAACACTAGGAGAAATCTTTTCAAAAATTTACGTAGGCCAATTTTTTCCGCCAAATGGTATAATTTTTTGAGCCATTTTCTCCAGGTTTCTCTGATTCTTTGAATCATATTTTTCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGTCACTCATCCACACTCAA</pcr_primer_p1>
		<pcr_primer_p2>CGAGAGAAGAAGAGATTGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAGTCACTCATCCACACTCAATCGCACTTGGTTTTCTTTTTTCTCATAAGGACGCATAATTGTGTTGGGCATGACCGCGTTGCCAACCGTAACTTCTTGTCCTATTGTTACACACCTATTTTTCCCTTTTCTCACACTTATTTTTGTATTTTTTGGGAGAAATGAACGAGAAACGGGAGAATGAGACAGAAAGAAAACGTTTTTTTTGGGGTTGGTTTCATTTCGGCAACACAATCTCTTCTTCTCTCG</canonical_amplicon>
		<polymorphic_amplicon>ATAGTCACTCATCCACACTCAATCGCACTTGGTTTTCTTTTTTCTCATAAGGACGCATAATTGTGTTGGGCATGACCGCGTTGCCAACCGTAACTTCTTGTCCTATTGTTACACACCTATTTTTCCCWTTTCTCACACTTATTTTTGTATTTTTTGGGAGAAATGAACGAGAAACGGGAGAATGAGACAGAAAGAAAACGTTTTTTTTGGGGTTGGTTTCATTTCGGCAACACAATCTCTTCTTCTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21242</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>331579</contig_pos>
        <strand>+</strand>
        <context>TCATAAGGAC[A/G]CATAATTGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCACTCATCCACACTCAATCGCACTTGGTTTTCTTTTTTCTCATAAGGAC</left_flank>
        <right_flank>CATAATTGTGTTGGGCATGACCGCGTTGCCAACCGTAACTTCTTGTCCTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAATAGATTTTCCATACTTCCATGTACACAGAGACACACTCACAAATAGACCAATTTTTGTTTGTATTAGAAAATGAAGAAAACCAAAGAGCCTGACCACCACCAAACGTTCATTTTCTGCTTTCTCTTCTCTTTTTTTGCTGGTTTATTCACACATCTGGCATAAAGGGTCCCTCTCAACCCCCAACCAATTGCCCTCTGCCATCCCTATCCGCCACCCGCACCCCAACTACACCACATTCCACTCATTTCCTCAACGCCTATTTTTTCACGCATCCGCCTACATTATCTCAACTTTGTCACTTTTCCTTTCGGCATTTTCCTTGTCGACGTCTTCTTGTTTTCTCCTGTATATTCATTTTTTCTTGACTAGTCTGTTTTCTGGGCGGAAGCGGAAGGAATAGGATGGGAGGAGGAGACGAAATGTGTAAATCCTAGCAACACATAGTCACTCATCCACACTCAATCGCACTTGGTTTTCTTTTTTCTCATAAGGACGCATAATTGTGTTGGGCATGACCGCGTTGCCAACCGTAACTTCTTGTCCTATTGTTACACACCTATTTTTCCCTTTTCTCACACTTATTTTTGTATTTTTTGGGAGAAATGAACGAGAAACGGGAGAATGAGACAGAAAGAAAACGTTTTTTTTGGGGTTGGTTTCATTTCGGCAACACAATCTCTTCTTCTCTCGCTTTTTATATTTCGATTCTGCACTTCGGCAAATAACACGATACCTTAGAGACCCATTTAACCTATTTCGCGCGTTCACTGTTTTTATATTTCAAAATTTACCCCAGAAATTTGTCCAGAAACTTGACAAAAACAAAAATCATGTTTTCGAAAGAAATTACTTTAATTCAAATAGTTTCTTTCAATTTTCAGCATAAAACTGTGGTAAGTACCGTAGCCAATCCAAAAAATCGAACTTTGCTCTTAGCGTTGAATAAATTTGAACACTAGGAGAAATCTTTTCAAAAATTTACGTAGGCCAATTTT</canonical>
            <polymorphic>CTAATAGATTTTCCATACTTCCATGTACACAGAGACACACTCACAAATAGACCAATTTTTGTTTGTATTAGAAAATGAAGAAAACCAAAGAGCCTGACCACCACCAAACGTTCATTTTCTGCTTTCTCTTCTCTTTTTTTGCTGGTTTATTCACACATCTGGCATAAAGGGTCCCTCTCAACCCCCAACCAATTGCCCTCTGCCATCCCTATCCGCCACCCGCACCCCAACTACACCACATTCCACTCATTTCCTCAACGCCTATTTTTTCACGCATCCGCCTACATTATCTCAACTTTGTCACTTTTCCTTTCGGCATTTTCCTTGTCGACGTCTTCTTGTTTTCTCCTGTATATTCATTTTTTCTTGACTAGTCTGTTTTCTGGGCGGAAGCGGAAGGAATAGGATGGGAGGAGGAGACGAAATGTGTAAATCCTAGCAACACATAGTCACTCATCCACACTCAATCGCACTTGGTTTTCTTTTTTCTCATAAGGACRCATAATTGTGTTGGGCATGACCGCGTTGCCAACCGTAACTTCTTGTCCTATTGTTACACACCTATTTTTCCCTTTTCTCACACTTATTTTTGTATTTTTTGGGAGAAATGAACGAGAAACGGGAGAATGAGACAGAAAGAAAACGTTTTTTTTGGGGTTGGTTTCATTTCGGCAACACAATCTCTTCTTCTCTCGCTTTTTATATTTCGATTCTGCACTTCGGCAAATAACACGATACCTTAGAGACCCATTTAACCTATTTCGCGCGTTCACTGTTTTTATATTTCAAAATTTACCCCAGAAATTTGTCCAGAAACTTGACAAAAACAAAAATCATGTTTTCGAAAGAAATTACTTTAATTCAAATAGTTTCTTTCAATTTTCAGCATAAAACTGTGGTAAGTACCGTAGCCAATCCAAAAAATCGAACTTTGCTCTTAGCGTTGAATAAATTTGAACACTAGGAGAAATCTTTTCAAAAATTTACGTAGGCCAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGTCACTCATCCACACTCAA</pcr_primer_p1>
		<pcr_primer_p2>CGAGAGAAGAAGAGATTGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAGTCACTCATCCACACTCAATCGCACTTGGTTTTCTTTTTTCTCATAAGGACGCATAATTGTGTTGGGCATGACCGCGTTGCCAACCGTAACTTCTTGTCCTATTGTTACACACCTATTTTTCCCTTTTCTCACACTTATTTTTGTATTTTTTGGGAGAAATGAACGAGAAACGGGAGAATGAGACAGAAAGAAAACGTTTTTTTTGGGGTTGGTTTCATTTCGGCAACACAATCTCTTCTTCTCTCG</canonical_amplicon>
		<polymorphic_amplicon>ATAGTCACTCATCCACACTCAATCGCACTTGGTTTTCTTTTTTCTCATAAGGACRCATAATTGTGTTGGGCATGACCGCGTTGCCAACCGTAACTTCTTGTCCTATTGTTACACACCTATTTTTCCCTTTTCTCACACTTATTTTTGTATTTTTTGGGAGAAATGAACGAGAAACGGGAGAATGAGACAGAAAGAAAACGTTTTTTTTGGGGTTGGTTTCATTTCGGCAACACAATCTCTTCTTCTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21243</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>331394</contig_pos>
        <strand>+</strand>
        <context>TTTTCCTTTC[A/G]GCATTTTCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTCACGCATCCGCCTACATTATCTCAACTTTGTCACTTTTCCTTTC</left_flank>
        <right_flank>GCATTTTCCTTGTCGACGTCTTCTTGTTTTCTCCTGTATATTCATTTTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTCCTAAATTTCGAAAAAATGGAATTAAAGAATTTCGAGAAAATCATTTTGTCTCTCTGCTCGAACTTTTTCGTTTCCCTCATTTTAGAATTTAGAGCTGTACATTTTGAAAAGAAATAGCTATAAAACCTTTGCCTATTGACATTTTATGCATGATTTCAAACACAATGAATTTAATAATTTCTAATAGATTTTCCATACTTCCATGTACACAGAGACACACTCACAAATAGACCAATTTTTGTTTGTATTAGAAAATGAAGAAAACCAAAGAGCCTGACCACCACCAAACGTTCATTTTCTGCTTTCTCTTCTCTTTTTTTGCTGGTTTATTCACACATCTGGCATAAAGGGTCCCTCTCAACCCCCAACCAATTGCCCTCTGCCATCCCTATCCGCCACCCGCACCCCAACTACACCACATTCCACTCATTTCCTCAACGCCTATTTTTTCACGCATCCGCCTACATTATCTCAACTTTGTCACTTTTCCTTTCGGCATTTTCCTTGTCGACGTCTTCTTGTTTTCTCCTGTATATTCATTTTTTCTTGACTAGTCTGTTTTCTGGGCGGAAGCGGAAGGAATAGGATGGGAGGAGGAGACGAAATGTGTAAATCCTAGCAACACATAGTCACTCATCCACACTCAATCGCACTTGGTTTTCTTTTTTCTCATAAGGACGCATAATTGTGTTGGGCATGACCGCGTTGCCAACCGTAACTTCTTGTCCTATTGTTACACACCTATTTTTCCCTTTTCTCACACTTATTTTTGTATTTTTTGGGAGAAATGAACGAGAAACGGGAGAATGAGACAGAAAGAAAACGTTTTTTTTGGGGTTGGTTTCATTTCGGCAACACAATCTCTTCTTCTCTCGCTTTTTATATTTCGATTCTGCACTTCGGCAAATAACACGATACCTTAGAGACCCATTTAACCTATTTCGCGCGTTCACTGTTTTTATATTTCAAAATTTACCCCAGAAATTTGTCCAGAA</canonical>
            <polymorphic>AACTCCTAAATTTCGAAAAAATGGAATTAAAGAATTTCGAGAAAATCATTTTGTCTCTCTGCTCGAACTTTTTCGTTTCCCTCATTTTAGAATTTAGAGCTGTACATTTTGAAAAGAAATAGCTATAAAACCTTTGCCTATTGACATTTTATGCATGATTTCAAACACAATGAATTTAATAATTTCTAATAGATTTTCCATACTTCCATGTACACAGAGACACACTCACAAATAGACCAATTTTTGTTTGTATTAGAAAATGAAGAAAACCAAAGAGCCTGACCACCACCAAACGTTCATTTTCTGCTTTCTCTTCTCTTTTTTTGCTGGTTTATTCACACATCTGGCATAAAGGGTCCCTCTCAACCCCCAACCAATTGCCCTCTGCCATCCCTATCCGCCACCCGCACCCCAACTACACCACATTCCACTCATTTCCTCAACGCCTATTTTTTCACGCATCCGCCTACATTATCTCAACTTTGTCACTTTTCCTTTCRGCATTTTCCTTGTCGACGTCTTCTTGTTTTCTCCTGTATATTCATTTTTTCTTGACTAGTCTGTTTTCTGGGCGGAAGCGGAAGGAATAGGATGGGAGGAGGAGACGAAATGTGTAAATCCTAGCAACACATAGTCACTCATCCACACTCAATCGCACTTGGTTTTCTTTTTTCTCATAAGGACGCATAATTGTGTTGGGCATGACCGCGTTGCCAACCGTAACTTCTTGTCCTATTGTTACACACCTATTTTTCCCTTTTCTCACACTTATTTTTGTATTTTTTGGGAGAAATGAACGAGAAACGGGAGAATGAGACAGAAAGAAAACGTTTTTTTTGGGGTTGGTTTCATTTCGGCAACACAATCTCTTCTTCTCTCGCTTTTTATATTTCGATTCTGCACTTCGGCAAATAACACGATACCTTAGAGACCCATTTAACCTATTTCGCGCGTTCACTGTTTTTATATTTCAAAATTTACCCCAGAAATTTGTCCAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGCTGGTTTATTCACACAT</pcr_primer_p1>
		<pcr_primer_p2>CCAGAAAACAGACTAGTCAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTGCTGGTTTATTCACACATCTGGCATAAAGGGTCCCTCTCAACCCCCAACCAATTGCCCTCTGCCATCCCTATCCGCCACCCGCACCCCAACTACACCACATTCCACTCATTTCCTCAACGCCTATTTTTTCACGCATCCGCCTACATTATCTCAACTTTGTCACTTTTCCTTTCGGCATTTTCCTTGTCGACGTCTTCTTGTTTTCTCCTGTATATTCATTTTTTCTTGACTAGTCTGTTTTCTGG</canonical_amplicon>
		<polymorphic_amplicon>TTTGCTGGTTTATTCACACATCTGGCATAAAGGGTCCCTCTCAACCCCCAACCAATTGCCCTCTGCCATCCCTATCCGCCACCCGCACCCCAACTACACCACATTCCACTCATTTCCTCAACGCCTATTTTTTCACGCATCCGCCTACATTATCTCAACTTTGTCACTTTTCCTTTCRGCATTTTCCTTGTCGACGTCTTCTTGTTTTCTCCTGTATATTCATTTTTTCTTGACTAGTCTGTTTTCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21244</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>344537</contig_pos>
        <strand>+</strand>
        <context>GACTTTTATC[C/T]CTCCCTATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATTTTCTAATCTCAAAAATGTTTACGTGTTTCACGAAGTGACTTTTATC</left_flank>
        <right_flank>CTCCCTATTTTTTTACTTGTCCCATTTTTCTTTATTTTTTCAAATCTTCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGACTTCCCGAACTGAATGGGTTTTCTATGACAATGGACTCTGTATAACACTATTCAAATTTTCAGGTCTACAAAGCCATTCATGACTACGACCCTCCCCAGCCCAATAGTGACGGAAAGTTTCTCACATTTAAAATGGGCGATATCATAGTATTACTGGATACGGTGGGTGAGGACCGCGGATGGTGGAAGGGACAAGTTAACAACAAGGTATATCTGATTAAAGTCTTCTCTATTATTGAAAAACAATTTTCAGACTGGATTCTTTCCACTCACCTACGTCAAACCATTAGGTCCTTTACCGTGTGAAGAGATTGAAGATCATTTGCCACCATCTTCGTCGAATAGCGCCATATCATTGTGAATTTTCAATTTTTCGTTTCCCCCTTGCCATTAGGATTACCTTTAGTTTTTTTTTAAGATTTTCCGAATTCTCTCAAAAACTGTCCATTTTCTAATCTCAAAAATGTTTACGTGTTTCACGAAGTGACTTTTATCTCTCCCTATTTTTTTACTTGTCCCATTTTTCTTTATTTTTTCAAATCTTCTAAAAATGCCATCAACAATTGTGATTCCTTTTTCTCCCACAACATCTCCATTCTTCGTGCCCAAAATATTTCTATTTTTTGTATATTTTCTAAACAAATCTTTTGTTAAACTGATGTGACATTGCTAGTCATAATTCTTTTCGTCTAATTTATCTGTAAGTTTGCCCCCACATTTTTCATCAGTCACATCAACGCTCCTTCCGGTTATATTGTACCATCTAGTACTAGTTTTTTTTTCACTTTGTTCCTTTTCGTTTCCATCCCATCAGTGCTCCATAAAATGTTGTCATTTTTTCGTGAAAAATCATTGACAGCGATTTGAAAAACATTGATTTTGTCAAAAGCTCGTTTATTACACAAAATATAGGAACTCACGATCTCGATGATTGTACAAAAAATGAAAGAGAGATAAGTCATTTATGCTACCGCAAGATATACCAGCACACAGGAA</canonical>
            <polymorphic>TCGACTTCCCGAACTGAATGGGTTTTCTATGACAATGGACTCTGTATAACACTATTCAAATTTTCAGGTCTACAAAGCCATTCATGACTACGACCCTCCCCAGCCCAATAGTGACGGAAAGTTTCTCACATTTAAAATGGGCGATATCATAGTATTACTGGATACGGTGGGTGAGGACCGCGGATGGTGGAAGGGACAAGTTAACAACAAGGTATATCTGATTAAAGTCTTCTCTATTATTGAAAAACAATTTTCAGACTGGATTCTTTCCACTCACCTACGTCAAACCATTAGGTCCTTTACCGTGTGAAGAGATTGAAGATCATTTGCCACCATCTTCGTCGAATAGCGCCATATCATTGTGAATTTTCAATTTTTCGTTTCCCCCTTGCCATTAGGATTACCTTTAGTTTTTTTTTAAGATTTTCCGAATTCTCTCAAAAACTGTCCATTTTCTAATCTCAAAAATGTTTACGTGTTTCACGAAGTGACTTTTATCYCTCCCTATTTTTTTACTTGTCCCATTTTTCTTTATTTTTTCAAATCTTCTAAAAATGCCATCAACAATTGTGATTCCTTTTTCTCCCACAACATCTCCATTCTTCGTGCCCAAAATATTTCTATTTTTTGTATATTTTCTAAACAAATCTTTTGTTAAACTGATGTGACATTGCTAGTCATAATTCTTTTCGTCTAATTTATCTGTAAGTTTGCCCCCACATTTTTCATCAGTCACATCAACGCTCCTTCCGGTTATATTGTACCATCTAGTACTAGTTTTTTTTTCACTTTGTTCCTTTTCGTTTCCATCCCATCAGTGCTCCATAAAATGTTGTCATTTTTTCGTGAAAAATCATTGACAGCGATTTGAAAAACATTGATTTTGTCAAAAGCTCGTTTATTACACAAAATATAGGAACTCACGATCTCGATGATTGTACAAAAAATGAAAGAGAGATAAGTCATTTATGCTACCGCAAGATATACCAGCACACAGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAAACTGTCCATTTTCTAAT</pcr_primer_p1>
		<pcr_primer_p2>TATGACTAGCAATGTCACATCAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TCAAAAACTGTCCATTTTCTAATCTCAAAAATGTTTACGTGTTTCACGAAGTGACTTTTATCTCTCCCTATTTTTTTACTTGTCCCATTTTTCTTTATTTTTTCAAATCTTCTAAAAATGCCATCAACAATTGTGATTCCTTTTTCTCCCACAACATCTCCATTCTTCGTGCCCAAAATATTTCTATTTTTTGTATATTTTCTAAACAAATCTTTTGTTAAACTGATGTGACATTGCTAGTCATA</canonical_amplicon>
		<polymorphic_amplicon>TCAAAAACTGTCCATTTTCTAATCTCAAAAATGTTTACGTGTTTCACGAAGTGACTTTTATCYCTCCCTATTTTTTTACTTGTCCCATTTTTCTTTATTTTTTCAAATCTTCTAAAAATGCCATCAACAATTGTGATTCCTTTTTCTCCCACAACATCTCCATTCTTCGTGCCCAAAATATTTCTATTTTTTGTATATTTTCTAAACAAATCTTTTGTTAAACTGATGTGACATTGCTAGTCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21245</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>346664</contig_pos>
        <strand>+</strand>
        <context>GAAGTGTTTT[C/T]GCTTCTCTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTATATTTCAAATCAGAAATATCCTCTTGAATCGAGACACGAAGTGTTTT</left_flank>
        <right_flank>GCTTCTCTCTTTTTTCTCATTGCCTCATCGCGTTGATTGGTCAAAGAATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGTTTGCTCTAATTGTTTTGCAGTCTCTTTGAGAATTGGAATCTGATTTTTGCGAATCTGATACTCCTGACAGATTTGCTCCCATTGCTCTGGGACGTGATCCGCTCCGAGTTGGATTGAACCATCACAGCAGATGAAGGATCCTCTTCCAAATCGTAGTACGTTTTTGAAAAAAGCCTTTTCAAGAATTATCCTAGTCTCTGGAACTGCTTGGTCAAGCATTCGGTTCACATTTGCAATGCATCGTCGCATATGAGATTGTTCCCAGTGCATTTGCCATACAACCTGAAGCATTCGGCACATTCTGTGTTGTTAATTTTCGGGTGATCTTTTAAAGCATCTTGTCAGCCACTCAAAAAATCAATATTTCAAGATCAAGTTTTGCTAGGTTCAAAAAGATACCGTATATTACAGAAATCGCCAAAAACTCACATCTTTCAGCTGCGTTCTATATTTCAAATCAGAAATATCCTCTTGAATCGAGACACGAAGTGTTTTCGCTTCTCTCTTTTTTCTCATTGCCTCATCGCGTTGATTGGTCAAAGAATCATAGAGATTCGTGATAACTGTGGCTTTCTTTCTTTTGAGGTACCTGAAAAATACTTAACGATGAGGAATATGATCTAAAGTCTTCTAGAACAACAAAAAAGCAAGTAAAAACTTACGATCTCAACAAATCCTCCTCCACATTTGTCGTATTGAATCCAAGACCTCCAGAATTCTGTTTGGATCCTCCGGCTAACCCATTATTCTTGAACTTGAGTTCTGACGTACTCAACTCGCACGATTCCAACGCTTCTCTGCAAACAAAAGTTGTGAAGAACTGATCATTAACATGACGTGATATGACTGACCTTACAATTTTGGCTGGGTCAGTGCCGGTTAGATTGATGTGAATTTTACGAAACGTTGTTGACTGTTTGTCGGCGATGGAGAAACTGACCTGGAAAGGTTTTTTTTGTCTTTTTTGAATCCTTAGAAAATCGATAACTGAGCAAT</canonical>
            <polymorphic>ACGTTTGCTCTAATTGTTTTGCAGTCTCTTTGAGAATTGGAATCTGATTTTTGCGAATCTGATACTCCTGACAGATTTGCTCCCATTGCTCTGGGACGTGATCCGCTCCGAGTTGGATTGAACCATCACAGCAGATGAAGGATCCTCTTCCAAATCGTAGTACGTTTTTGAAAAAAGCCTTTTCAAGAATTATCCTAGTCTCTGGAACTGCTTGGTCAAGCATTCGGTTCACATTTGCAATGCATCGTCGCATATGAGATTGTTCCCAGTGCATTTGCCATACAACCTGAAGCATTCGGCACATTCTGTGTTGTTAATTTTCGGGTGATCTTTTAAAGCATCTTGTCAGCCACTCAAAAAATCAATATTTCAAGATCAAGTTTTGCTAGGTTCAAAAAGATACCGTATATTACAGAAATCGCCAAAAACTCACATCTTTCAGCTGCGTTCTATATTTCAAATCAGAAATATCCTCTTGAATCGAGACACGAAGTGTTTTYGCTTCTCTCTTTTTTCTCATTGCCTCATCGCGTTGATTGGTCAAAGAATCATAGAGATTCGTGATAACTGTGGCTTTCTTTCTTTTGAGGTACCTGAAAAATACTTAACGATGAGGAATATGATCTAAAGTCTTCTAGAACAACAAAAAAGCAAGTAAAAACTTACGATCTCAACAAATCCTCCTCCACATTTGTCGTATTGAATCCAAGACCTCCAGAATTCTGTTTGGATCCTCCGGCTAACCCATTATTCTTGAACTTGAGTTCTGACGTACTCAACTCGCACGATTCCAACGCTTCTCTGCAAACAAAAGTTGTGAAGAACTGATCATTAACATGACGTGATATGACTGACCTTACAATTTTGGCTGGGTCAGTGCCGGTTAGATTGATGTGAATTTTACGAAACGTTGTTGACTGTTTGTCGGCGATGGAGAAACTGACCTGGAAAGGTTTTTTTTGTCTTTTTTGAATCCTTAGAAAATCGATAACTGAGCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGCTAGGTTCAAAAAGATAC</pcr_primer_p1>
		<pcr_primer_p2>CTTTAGATCATATTCCTCATCGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTGCTAGGTTCAAAAAGATACCGTATATTACAGAAATCGCCAAAAACTCACATCTTTCAGCTGCGTTCTATATTTCAAATCAGAAATATCCTCTTGAATCGAGACACGAAGTGTTTTCGCTTCTCTCTTTTTTCTCATTGCCTCATCGCGTTGATTGGTCAAAGAATCATAGAGATTCGTGATAACTGTGGCTTTCTTTCTTTTGAGGTACCTGAAAAATACTTAACGATGAGGAATATGATCTAAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTTGCTAGGTTCAAAAAGATACCGTATATTACAGAAATCGCCAAAAACTCACATCTTTCAGCTGCGTTCTATATTTCAAATCAGAAATATCCTCTTGAATCGAGACACGAAGTGTTTTYGCTTCTCTCTTTTTTCTCATTGCCTCATCGCGTTGATTGGTCAAAGAATCATAGAGATTCGTGATAACTGTGGCTTTCTTTCTTTTGAGGTACCTGAAAAATACTTAACGATGAGGAATATGATCTAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21246</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>346633</contig_pos>
        <strand>+</strand>
        <context>AAATCAGAAA[C/T]ATCCTCTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGCCAAAAACTCACATCTTTCAGCTGCGTTCTATATTTCAAATCAGAAA</left_flank>
        <right_flank>ATCCTCTTGAATCGAGACACGAAGTGTTTTCGCTTCTCTCTTTTTTCTCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATGAGGCAGCAATATCTGTGCACCTCCAAACGTTTGCTCTAATTGTTTTGCAGTCTCTTTGAGAATTGGAATCTGATTTTTGCGAATCTGATACTCCTGACAGATTTGCTCCCATTGCTCTGGGACGTGATCCGCTCCGAGTTGGATTGAACCATCACAGCAGATGAAGGATCCTCTTCCAAATCGTAGTACGTTTTTGAAAAAAGCCTTTTCAAGAATTATCCTAGTCTCTGGAACTGCTTGGTCAAGCATTCGGTTCACATTTGCAATGCATCGTCGCATATGAGATTGTTCCCAGTGCATTTGCCATACAACCTGAAGCATTCGGCACATTCTGTGTTGTTAATTTTCGGGTGATCTTTTAAAGCATCTTGTCAGCCACTCAAAAAATCAATATTTCAAGATCAAGTTTTGCTAGGTTCAAAAAGATACCGTATATTACAGAAATCGCCAAAAACTCACATCTTTCAGCTGCGTTCTATATTTCAAATCAGAAATATCCTCTTGAATCGAGACACGAAGTGTTTTCGCTTCTCTCTTTTTTCTCATTGCCTCATCGCGTTGATTGGTCAAAGAATCATAGAGATTCGTGATAACTGTGGCTTTCTTTCTTTTGAGGTACCTGAAAAATACTTAACGATGAGGAATATGATCTAAAGTCTTCTAGAACAACAAAAAAGCAAGTAAAAACTTACGATCTCAACAAATCCTCCTCCACATTTGTCGTATTGAATCCAAGACCTCCAGAATTCTGTTTGGATCCTCCGGCTAACCCATTATTCTTGAACTTGAGTTCTGACGTACTCAACTCGCACGATTCCAACGCTTCTCTGCAAACAAAAGTTGTGAAGAACTGATCATTAACATGACGTGATATGACTGACCTTACAATTTTGGCTGGGTCAGTGCCGGTTAGATTGATGTGAATTTTACGAAACGTTGTTGACTGTTTGTCGGCGATGGAGAAACTGACCTGGAAAGGTTTTTTTTGTCTTTTT</canonical>
            <polymorphic>TTATGAGGCAGCAATATCTGTGCACCTCCAAACGTTTGCTCTAATTGTTTTGCAGTCTCTTTGAGAATTGGAATCTGATTTTTGCGAATCTGATACTCCTGACAGATTTGCTCCCATTGCTCTGGGACGTGATCCGCTCCGAGTTGGATTGAACCATCACAGCAGATGAAGGATCCTCTTCCAAATCGTAGTACGTTTTTGAAAAAAGCCTTTTCAAGAATTATCCTAGTCTCTGGAACTGCTTGGTCAAGCATTCGGTTCACATTTGCAATGCATCGTCGCATATGAGATTGTTCCCAGTGCATTTGCCATACAACCTGAAGCATTCGGCACATTCTGTGTTGTTAATTTTCGGGTGATCTTTTAAAGCATCTTGTCAGCCACTCAAAAAATCAATATTTCAAGATCAAGTTTTGCTAGGTTCAAAAAGATACCGTATATTACAGAAATCGCCAAAAACTCACATCTTTCAGCTGCGTTCTATATTTCAAATCAGAAAYATCCTCTTGAATCGAGACACGAAGTGTTTTCGCTTCTCTCTTTTTTCTCATTGCCTCATCGCGTTGATTGGTCAAAGAATCATAGAGATTCGTGATAACTGTGGCTTTCTTTCTTTTGAGGTACCTGAAAAATACTTAACGATGAGGAATATGATCTAAAGTCTTCTAGAACAACAAAAAAGCAAGTAAAAACTTACGATCTCAACAAATCCTCCTCCACATTTGTCGTATTGAATCCAAGACCTCCAGAATTCTGTTTGGATCCTCCGGCTAACCCATTATTCTTGAACTTGAGTTCTGACGTACTCAACTCGCACGATTCCAACGCTTCTCTGCAAACAAAAGTTGTGAAGAACTGATCATTAACATGACGTGATATGACTGACCTTACAATTTTGGCTGGGTCAGTGCCGGTTAGATTGATGTGAATTTTACGAAACGTTGTTGACTGTTTGTCGGCGATGGAGAAACTGACCTGGAAAGGTTTTTTTTGTCTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGCTAGGTTCAAAAAGATAC</pcr_primer_p1>
		<pcr_primer_p2>CTTTAGATCATATTCCTCATCGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTGCTAGGTTCAAAAAGATACCGTATATTACAGAAATCGCCAAAAACTCACATCTTTCAGCTGCGTTCTATATTTCAAATCAGAAATATCCTCTTGAATCGAGACACGAAGTGTTTTCGCTTCTCTCTTTTTTCTCATTGCCTCATCGCGTTGATTGGTCAAAGAATCATAGAGATTCGTGATAACTGTGGCTTTCTTTCTTTTGAGGTACCTGAAAAATACTTAACGATGAGGAATATGATCTAAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTTGCTAGGTTCAAAAAGATACCGTATATTACAGAAATCGCCAAAAACTCACATCTTTCAGCTGCGTTCTATATTTCAAATCAGAAAYATCCTCTTGAATCGAGACACGAAGTGTTTTCGCTTCTCTCTTTTTTCTCATTGCCTCATCGCGTTGATTGGTCAAAGAATCATAGAGATTCGTGATAACTGTGGCTTTCTTTCTTTTGAGGTACCTGAAAAATACTTAACGATGAGGAATATGATCTAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21247</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>346515</contig_pos>
        <strand>+</strand>
        <context>TCTTGTCAGC[C/T]ACTCAAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACATTCTGTGTTGTTAATTTTCGGGTGATCTTTTAAAGCATCTTGTCAGC</left_flank>
        <right_flank>ACTCAAAAAATCAATATTTCAAGATCAAGTTTTGCTAGGTTCAAAAAGAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTACTTCTAGCATTGAATTCTTCGCCGAATCCTCCACTCTTCGCAACAACGCCTCCTTCTTCCACACTCTTACTGTCAACGTCTGCAACTGAGTGAGTGTCTGAGCCAATCCTTTATTATGAGGCAGCAATATCTGTGCACCTCCAAACGTTTGCTCTAATTGTTTTGCAGTCTCTTTGAGAATTGGAATCTGATTTTTGCGAATCTGATACTCCTGACAGATTTGCTCCCATTGCTCTGGGACGTGATCCGCTCCGAGTTGGATTGAACCATCACAGCAGATGAAGGATCCTCTTCCAAATCGTAGTACGTTTTTGAAAAAAGCCTTTTCAAGAATTATCCTAGTCTCTGGAACTGCTTGGTCAAGCATTCGGTTCACATTTGCAATGCATCGTCGCATATGAGATTGTTCCCAGTGCATTTGCCATACAACCTGAAGCATTCGGCACATTCTGTGTTGTTAATTTTCGGGTGATCTTTTAAAGCATCTTGTCAGCCACTCAAAAAATCAATATTTCAAGATCAAGTTTTGCTAGGTTCAAAAAGATACCGTATATTACAGAAATCGCCAAAAACTCACATCTTTCAGCTGCGTTCTATATTTCAAATCAGAAATATCCTCTTGAATCGAGACACGAAGTGTTTTCGCTTCTCTCTTTTTTCTCATTGCCTCATCGCGTTGATTGGTCAAAGAATCATAGAGATTCGTGATAACTGTGGCTTTCTTTCTTTTGAGGTACCTGAAAAATACTTAACGATGAGGAATATGATCTAAAGTCTTCTAGAACAACAAAAAAGCAAGTAAAAACTTACGATCTCAACAAATCCTCCTCCACATTTGTCGTATTGAATCCAAGACCTCCAGAATTCTGTTTGGATCCTCCGGCTAACCCATTATTCTTGAACTTGAGTTCTGACGTACTCAACTCGCACGATTCCAACGCTTCTCTGCAAACAAAAGTTGTGAAGAACTGATCATTAACATGACGTGATATGAC</canonical>
            <polymorphic>ACTTACTTCTAGCATTGAATTCTTCGCCGAATCCTCCACTCTTCGCAACAACGCCTCCTTCTTCCACACTCTTACTGTCAACGTCTGCAACTGAGTGAGTGTCTGAGCCAATCCTTTATTATGAGGCAGCAATATCTGTGCACCTCCAAACGTTTGCTCTAATTGTTTTGCAGTCTCTTTGAGAATTGGAATCTGATTTTTGCGAATCTGATACTCCTGACAGATTTGCTCCCATTGCTCTGGGACGTGATCCGCTCCGAGTTGGATTGAACCATCACAGCAGATGAAGGATCCTCTTCCAAATCGTAGTACGTTTTTGAAAAAAGCCTTTTCAAGAATTATCCTAGTCTCTGGAACTGCTTGGTCAAGCATTCGGTTCACATTTGCAATGCATCGTCGCATATGAGATTGTTCCCAGTGCATTTGCCATACAACCTGAAGCATTCGGCACATTCTGTGTTGTTAATTTTCGGGTGATCTTTTAAAGCATCTTGTCAGCYACTCAAAAAATCAATATTTCAAGATCAAGTTTTGCTAGGTTCAAAAAGATACCGTATATTACAGAAATCGCCAAAAACTCACATCTTTCAGCTGCGTTCTATATTTCAAATCAGAAATATCCTCTTGAATCGAGACACGAAGTGTTTTCGCTTCTCTCTTTTTTCTCATTGCCTCATCGCGTTGATTGGTCAAAGAATCATAGAGATTCGTGATAACTGTGGCTTTCTTTCTTTTGAGGTACCTGAAAAATACTTAACGATGAGGAATATGATCTAAAGTCTTCTAGAACAACAAAAAAGCAAGTAAAAACTTACGATCTCAACAAATCCTCCTCCACATTTGTCGTATTGAATCCAAGACCTCCAGAATTCTGTTTGGATCCTCCGGCTAACCCATTATTCTTGAACTTGAGTTCTGACGTACTCAACTCGCACGATTCCAACGCTTCTCTGCAAACAAAAGTTGTGAAGAACTGATCATTAACATGACGTGATATGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>219 172 166 131 112 107 93</canonical_bands>
                <polymorphic_bands>265 219 166 131 112 107</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>116 107 103 97 80 68 56 40 39 38 34 30 29 28 28 25 25 17 9 9 7 7 4 2 2</canonical_bands>
                <polymorphic_bands>116 107 105 103 97 68 56 40 39 38 34 30 29 28 28 25 17 9 9 7 7 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCCTTTTCAAGAATTATCCTA</pcr_primer_p1>
		<pcr_primer_p2>TGGCGATTTCTGTAATATACG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGCCTTTTCAAGAATTATCCTAGTCTCTGGAACTGCTTGGTCAAGCATTCGGTTCACATTTGCAATGCATCGTCGCATATGAGATTGTTCCCAGTGCATTTGCCATACAACCTGAAGCATTCGGCACATTCTGTGTTGTTAATTTTCGGGTGATCTTTTAAAGCATCTTGTCAGCCACTCAAAAAATCAATATTTCAAGATCAAGTTTTGCTAGGTTCAAAAAGATACCGTATATTACAGAAATCGCCA</canonical_amplicon>
		<polymorphic_amplicon>AAGCCTTTTCAAGAATTATCCTAGTCTCTGGAACTGCTTGGTCAAGCATTCGGTTCACATTTGCAATGCATCGTCGCATATGAGATTGTTCCCAGTGCATTTGCCATACAACCTGAAGCATTCGGCACATTCTGTGTTGTTAATTTTCGGGTGATCTTTTAAAGCATCTTGTCAGCYACTCAAAAAATCAATATTTCAAGATCAAGTTTTGCTAGGTTCAAAAAGATACCGTATATTACAGAAATCGCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21248</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>346482</contig_pos>
        <strand>+</strand>
        <context>GTGTTGTTAA[C/T]TTTCGGGTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTGCATTTGCCATACAACCTGAAGCATTCGGCACATTCTGTGTTGTTAA</left_flank>
        <right_flank>TTTCGGGTGATCTTTTAAAGCATCTTGTCAGCCACTCAAAAAATCAATAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTGGATTAAAATCAATCTGCTTTTTGTTGAAGACTTACTTCTAGCATTGAATTCTTCGCCGAATCCTCCACTCTTCGCAACAACGCCTCCTTCTTCCACACTCTTACTGTCAACGTCTGCAACTGAGTGAGTGTCTGAGCCAATCCTTTATTATGAGGCAGCAATATCTGTGCACCTCCAAACGTTTGCTCTAATTGTTTTGCAGTCTCTTTGAGAATTGGAATCTGATTTTTGCGAATCTGATACTCCTGACAGATTTGCTCCCATTGCTCTGGGACGTGATCCGCTCCGAGTTGGATTGAACCATCACAGCAGATGAAGGATCCTCTTCCAAATCGTAGTACGTTTTTGAAAAAAGCCTTTTCAAGAATTATCCTAGTCTCTGGAACTGCTTGGTCAAGCATTCGGTTCACATTTGCAATGCATCGTCGCATATGAGATTGTTCCCAGTGCATTTGCCATACAACCTGAAGCATTCGGCACATTCTGTGTTGTTAATTTTCGGGTGATCTTTTAAAGCATCTTGTCAGCCACTCAAAAAATCAATATTTCAAGATCAAGTTTTGCTAGGTTCAAAAAGATACCGTATATTACAGAAATCGCCAAAAACTCACATCTTTCAGCTGCGTTCTATATTTCAAATCAGAAATATCCTCTTGAATCGAGACACGAAGTGTTTTCGCTTCTCTCTTTTTTCTCATTGCCTCATCGCGTTGATTGGTCAAAGAATCATAGAGATTCGTGATAACTGTGGCTTTCTTTCTTTTGAGGTACCTGAAAAATACTTAACGATGAGGAATATGATCTAAAGTCTTCTAGAACAACAAAAAAGCAAGTAAAAACTTACGATCTCAACAAATCCTCCTCCACATTTGTCGTATTGAATCCAAGACCTCCAGAATTCTGTTTGGATCCTCCGGCTAACCCATTATTCTTGAACTTGAGTTCTGACGTACTCAACTCGCACGATTCCAACGCTTCTCTGCAAACAAAAGTTGT</canonical>
            <polymorphic>ACTGGATTAAAATCAATCTGCTTTTTGTTGAAGACTTACTTCTAGCATTGAATTCTTCGCCGAATCCTCCACTCTTCGCAACAACGCCTCCTTCTTCCACACTCTTACTGTCAACGTCTGCAACTGAGTGAGTGTCTGAGCCAATCCTTTATTATGAGGCAGCAATATCTGTGCACCTCCAAACGTTTGCTCTAATTGTTTTGCAGTCTCTTTGAGAATTGGAATCTGATTTTTGCGAATCTGATACTCCTGACAGATTTGCTCCCATTGCTCTGGGACGTGATCCGCTCCGAGTTGGATTGAACCATCACAGCAGATGAAGGATCCTCTTCCAAATCGTAGTACGTTTTTGAAAAAAGCCTTTTCAAGAATTATCCTAGTCTCTGGAACTGCTTGGTCAAGCATTCGGTTCACATTTGCAATGCATCGTCGCATATGAGATTGTTCCCAGTGCATTTGCCATACAACCTGAAGCATTCGGCACATTCTGTGTTGTTAAYTTTCGGGTGATCTTTTAAAGCATCTTGTCAGCCACTCAAAAAATCAATATTTCAAGATCAAGTTTTGCTAGGTTCAAAAAGATACCGTATATTACAGAAATCGCCAAAAACTCACATCTTTCAGCTGCGTTCTATATTTCAAATCAGAAATATCCTCTTGAATCGAGACACGAAGTGTTTTCGCTTCTCTCTTTTTTCTCATTGCCTCATCGCGTTGATTGGTCAAAGAATCATAGAGATTCGTGATAACTGTGGCTTTCTTTCTTTTGAGGTACCTGAAAAATACTTAACGATGAGGAATATGATCTAAAGTCTTCTAGAACAACAAAAAAGCAAGTAAAAACTTACGATCTCAACAAATCCTCCTCCACATTTGTCGTATTGAATCCAAGACCTCCAGAATTCTGTTTGGATCCTCCGGCTAACCCATTATTCTTGAACTTGAGTTCTGACGTACTCAACTCGCACGATTCCAACGCTTCTCTGCAAACAAAAGTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>403 153 143 128 100 50 23</canonical_bands>
                <polymorphic_bands>531 153 143 100 50 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCCTCTTCCAAATCGTAGTA</pcr_primer_p1>
		<pcr_primer_p2>CTAGCAAAACTTGATCTTGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATCCTCTTCCAAATCGTAGTACGTTTTTGAAAAAAGCCTTTTCAAGAATTATCCTAGTCTCTGGAACTGCTTGGTCAAGCATTCGGTTCACATTTGCAATGCATCGTCGCATATGAGATTGTTCCCAGTGCATTTGCCATACAACCTGAAGCATTCGGCACATTCTGTGTTGTTAATTTTCGGGTGATCTTTTAAAGCATCTTGTCAGCCACTCAAAAAATCAATATTTCAAGATCAAGTTTTGCTAG</canonical_amplicon>
		<polymorphic_amplicon>GATCCTCTTCCAAATCGTAGTACGTTTTTGAAAAAAGCCTTTTCAAGAATTATCCTAGTCTCTGGAACTGCTTGGTCAAGCATTCGGTTCACATTTGCAATGCATCGTCGCATATGAGATTGTTCCCAGTGCATTTGCCATACAACCTGAAGCATTCGGCACATTCTGTGTTGTTAAYTTTCGGGTGATCTTTTAAAGCATCTTGTCAGCCACTCAAAAAATCAATATTTCAAGATCAAGTTTTGCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21249</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>346283</contig_pos>
        <strand>+</strand>
        <context>CGAGTTGGAT[C/T]GAACCATCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGACAGATTTGCTCCCATTGCTCTGGGACGTGATCCGCTCCGAGTTGGAT</left_flank>
        <right_flank>GAACCATCACAGCAGATGAAGGATCCTCTTCCAAATCGTAGTACGTTTTT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCTCTATTTTAACAAACTTTTGCTTGAAAAAAAACTCACATTTAAATGATGCATGGTTCGATTGAGCTCAATTGCCTTCTCTGCATTCTCTTCCAAAAATTGAACCAGCGATGGCACATCAACATTACATGGAATATACAGCCGACCATCGACTCCAATAGCCAACTCGTCATATGAAGTGACCACCTGGAATAATACTGGATTAAAATCAATCTGCTTTTTGTTGAAGACTTACTTCTAGCATTGAATTCTTCGCCGAATCCTCCACTCTTCGCAACAACGCCTCCTTCTTCCACACTCTTACTGTCAACGTCTGCAACTGAGTGAGTGTCTGAGCCAATCCTTTATTATGAGGCAGCAATATCTGTGCACCTCCAAACGTTTGCTCTAATTGTTTTGCAGTCTCTTTGAGAATTGGAATCTGATTTTTGCGAATCTGATACTCCTGACAGATTTGCTCCCATTGCTCTGGGACGTGATCCGCTCCGAGTTGGATTGAACCATCACAGCAGATGAAGGATCCTCTTCCAAATCGTAGTACGTTTTTGAAAAAAGCCTTTTCAAGAATTATCCTAGTCTCTGGAACTGCTTGGTCAAGCATTCGGTTCACATTTGCAATGCATCGTCGCATATGAGATTGTTCCCAGTGCATTTGCCATACAACCTGAAGCATTCGGCACATTCTGTGTTGTTAATTTTCGGGTGATCTTTTAAAGCATCTTGTCAGCCACTCAAAAAATCAATATTTCAAGATCAAGTTTTGCTAGGTTCAAAAAGATACCGTATATTACAGAAATCGCCAAAAACTCACATCTTTCAGCTGCGTTCTATATTTCAAATCAGAAATATCCTCTTGAATCGAGACACGAAGTGTTTTCGCTTCTCTCTTTTTTCTCATTGCCTCATCGCGTTGATTGGTCAAAGAATCATAGAGATTCGTGATAACTGTGGCTTTCTTTCTTTTGAGGTACCTGAAAAATACTTAACGATGAGGAAT</canonical>
            <polymorphic>TTTTCTCTATTTTAACAAACTTTTGCTTGAAAAAAAACTCACATTTAAATGATGCATGGTTCGATTGAGCTCAATTGCCTTCTCTGCATTCTCTTCCAAAAATTGAACCAGCGATGGCACATCAACATTACATGGAATATACAGCCGACCATCGACTCCAATAGCCAACTCGTCATATGAAGTGACCACCTGGAATAATACTGGATTAAAATCAATCTGCTTTTTGTTGAAGACTTACTTCTAGCATTGAATTCTTCGCCGAATCCTCCACTCTTCGCAACAACGCCTCCTTCTTCCACACTCTTACTGTCAACGTCTGCAACTGAGTGAGTGTCTGAGCCAATCCTTTATTATGAGGCAGCAATATCTGTGCACCTCCAAACGTTTGCTCTAATTGTTTTGCAGTCTCTTTGAGAATTGGAATCTGATTTTTGCGAATCTGATACTCCTGACAGATTTGCTCCCATTGCTCTGGGACGTGATCCGCTCCGAGTTGGATYGAACCATCACAGCAGATGAAGGATCCTCTTCCAAATCGTAGTACGTTTTTGAAAAAAGCCTTTTCAAGAATTATCCTAGTCTCTGGAACTGCTTGGTCAAGCATTCGGTTCACATTTGCAATGCATCGTCGCATATGAGATTGTTCCCAGTGCATTTGCCATACAACCTGAAGCATTCGGCACATTCTGTGTTGTTAATTTTCGGGTGATCTTTTAAAGCATCTTGTCAGCCACTCAAAAAATCAATATTTCAAGATCAAGTTTTGCTAGGTTCAAAAAGATACCGTATATTACAGAAATCGCCAAAAACTCACATCTTTCAGCTGCGTTCTATATTTCAAATCAGAAATATCCTCTTGAATCGAGACACGAAGTGTTTTCGCTTCTCTCTTTTTTCTCATTGCCTCATCGCGTTGATTGGTCAAAGAATCATAGAGATTCGTGATAACTGTGGCTTTCTTTCTTTTGAGGTACCTGAAAAATACTTAACGATGAGGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTATTATGAGGCAGCAATATCT</pcr_primer_p1>
		<pcr_primer_p2>GCAGTTCCAGAGACTAGGATAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTATTATGAGGCAGCAATATCTGTGCACCTCCAAACGTTTGCTCTAATTGTTTTGCAGTCTCTTTGAGAATTGGAATCTGATTTTTGCGAATCTGATACTCCTGACAGATTTGCTCCCATTGCTCTGGGACGTGATCCGCTCCGAGTTGGATTGAACCATCACAGCAGATGAAGGATCCTCTTCCAAATCGTAGTACGTTTTTGAAAAAAGCCTTTTCAAGAATTATCCTAGTCTCTGGAACTGC</canonical_amplicon>
		<polymorphic_amplicon>TTTATTATGAGGCAGCAATATCTGTGCACCTCCAAACGTTTGCTCTAATTGTTTTGCAGTCTCTTTGAGAATTGGAATCTGATTTTTGCGAATCTGATACTCCTGACAGATTTGCTCCCATTGCTCTGGGACGTGATCCGCTCCGAGTTGGATYGAACCATCACAGCAGATGAAGGATCCTCTTCCAAATCGTAGTACGTTTTTGAAAAAAGCCTTTTCAAGAATTATCCTAGTCTCTGGAACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21250</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>346181</contig_pos>
        <strand>+</strand>
        <context>GCTCTAATTG[C/T]TTTGCAGTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATTATGAGGCAGCAATATCTGTGCACCTCCAAACGTTTGCTCTAATTG</left_flank>
        <right_flank>TTTGCAGTCTCTTTGAGAATTGGAATCTGATTTTTGCGAATCTGATACTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGTTCTACTTCTCGAGCTTGTATAAACGAAATTACGAGAAAAATACGTTTTTATTCTCTTTAATACAGTACCGCTCTGGGTCGTAGTTGCCTTGAAGCTTTTTTCTCTATTTTAACAAACTTTTGCTTGAAAAAAAACTCACATTTAAATGATGCATGGTTCGATTGAGCTCAATTGCCTTCTCTGCATTCTCTTCCAAAAATTGAACCAGCGATGGCACATCAACATTACATGGAATATACAGCCGACCATCGACTCCAATAGCCAACTCGTCATATGAAGTGACCACCTGGAATAATACTGGATTAAAATCAATCTGCTTTTTGTTGAAGACTTACTTCTAGCATTGAATTCTTCGCCGAATCCTCCACTCTTCGCAACAACGCCTCCTTCTTCCACACTCTTACTGTCAACGTCTGCAACTGAGTGAGTGTCTGAGCCAATCCTTTATTATGAGGCAGCAATATCTGTGCACCTCCAAACGTTTGCTCTAATTGTTTTGCAGTCTCTTTGAGAATTGGAATCTGATTTTTGCGAATCTGATACTCCTGACAGATTTGCTCCCATTGCTCTGGGACGTGATCCGCTCCGAGTTGGATTGAACCATCACAGCAGATGAAGGATCCTCTTCCAAATCGTAGTACGTTTTTGAAAAAAGCCTTTTCAAGAATTATCCTAGTCTCTGGAACTGCTTGGTCAAGCATTCGGTTCACATTTGCAATGCATCGTCGCATATGAGATTGTTCCCAGTGCATTTGCCATACAACCTGAAGCATTCGGCACATTCTGTGTTGTTAATTTTCGGGTGATCTTTTAAAGCATCTTGTCAGCCACTCAAAAAATCAATATTTCAAGATCAAGTTTTGCTAGGTTCAAAAAGATACCGTATATTACAGAAATCGCCAAAAACTCACATCTTTCAGCTGCGTTCTATATTTCAAATCAGAAATATCCTCTTGAATCGAGACACGAAGTGTTTTCGCTTCTCTCTTTTTTCT</canonical>
            <polymorphic>CAAGTTCTACTTCTCGAGCTTGTATAAACGAAATTACGAGAAAAATACGTTTTTATTCTCTTTAATACAGTACCGCTCTGGGTCGTAGTTGCCTTGAAGCTTTTTTCTCTATTTTAACAAACTTTTGCTTGAAAAAAAACTCACATTTAAATGATGCATGGTTCGATTGAGCTCAATTGCCTTCTCTGCATTCTCTTCCAAAAATTGAACCAGCGATGGCACATCAACATTACATGGAATATACAGCCGACCATCGACTCCAATAGCCAACTCGTCATATGAAGTGACCACCTGGAATAATACTGGATTAAAATCAATCTGCTTTTTGTTGAAGACTTACTTCTAGCATTGAATTCTTCGCCGAATCCTCCACTCTTCGCAACAACGCCTCCTTCTTCCACACTCTTACTGTCAACGTCTGCAACTGAGTGAGTGTCTGAGCCAATCCTTTATTATGAGGCAGCAATATCTGTGCACCTCCAAACGTTTGCTCTAATTGYTTTGCAGTCTCTTTGAGAATTGGAATCTGATTTTTGCGAATCTGATACTCCTGACAGATTTGCTCCCATTGCTCTGGGACGTGATCCGCTCCGAGTTGGATTGAACCATCACAGCAGATGAAGGATCCTCTTCCAAATCGTAGTACGTTTTTGAAAAAAGCCTTTTCAAGAATTATCCTAGTCTCTGGAACTGCTTGGTCAAGCATTCGGTTCACATTTGCAATGCATCGTCGCATATGAGATTGTTCCCAGTGCATTTGCCATACAACCTGAAGCATTCGGCACATTCTGTGTTGTTAATTTTCGGGTGATCTTTTAAAGCATCTTGTCAGCCACTCAAAAAATCAATATTTCAAGATCAAGTTTTGCTAGGTTCAAAAAGATACCGTATATTACAGAAATCGCCAAAAACTCACATCTTTCAGCTGCGTTCTATATTTCAAATCAGAAATATCCTCTTGAATCGAGACACGAAGTGTTTTCGCTTCTCTCTTTTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTGCTTTTTGTTGAAGACTTA</pcr_primer_p1>
		<pcr_primer_p2>GAGCAAATCTGTCAGGAGTATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCTGCTTTTTGTTGAAGACTTACTTCTAGCATTGAATTCTTCGCCGAATCCTCCACTCTTCGCAACAACGCCTCCTTCTTCCACACTCTTACTGTCAACGTCTGCAACTGAGTGAGTGTCTGAGCCAATCCTTTATTATGAGGCAGCAATATCTGTGCACCTCCAAACGTTTGCTCTAATTGTTTTGCAGTCTCTTTGAGAATTGGAATCTGATTTTTGCGAATCTGATACTCCTGACAGATTTGCTC</canonical_amplicon>
		<polymorphic_amplicon>ATCTGCTTTTTGTTGAAGACTTACTTCTAGCATTGAATTCTTCGCCGAATCCTCCACTCTTCGCAACAACGCCTCCTTCTTCCACACTCTTACTGTCAACGTCTGCAACTGAGTGAGTGTCTGAGCCAATCCTTTATTATGAGGCAGCAATATCTGTGCACCTCCAAACGTTTGCTCTAATTGYTTTGCAGTCTCTTTGAGAATTGGAATCTGATTTTTGCGAATCTGATACTCCTGACAGATTTGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21251</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>419232</contig_pos>
        <strand>+</strand>
        <context>ATTATTTTGT[C/T]GTTTTCATCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGT</left_flank>
        <right_flank>GTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTACTCAAAAAACGGAAAACAACTTTTTTGGCGACAAAATTCACTTTTTGGAGAATTTCGGATTTTTGGATCTTTTGTTGTCAAAAATCTGACGATTATGAATGTGTAAAATTAATTTTGATCTTGATTTAAAAAATTATTCATCATCGTTTTCTATTTTTTCCAAATTTTTGAAAAAAAAATTTTTAAAAACCCGAAATTTTCCAAAAAGTGAATTTTGTCGCCAAAAAAGTTGCTTTCCGTTTTCTGGGTTTCAGAATAGTTTTTTAAAGTTATTTGCTACATTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTCATTTAACCAAAATGCGATTCGTGTTCAGTTTAGTTAATTAGCTGGTGTTTCTTCTCAACGTTTTAGCAA</canonical>
            <polymorphic>ATTTTTACTCAAAAAACGGAAAACAACTTTTTTGGCGACAAAATTCACTTTTTGGAGAATTTCGGATTTTTGGATCTTTTGTTGTCAAAAATCTGACGATTATGAATGTGTAAAATTAATTTTGATCTTGATTTAAAAAATTATTCATCATCGTTTTCTATTTTTTCCAAATTTTTGAAAAAAAAATTTTTAAAAACCCGAAATTTTCCAAAAAGTGAATTTTGTCGCCAAAAAAGTTGCTTTCCGTTTTCTGGGTTTCAGAATAGTTTTTTAAAGTTATTTGCTACATTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTYGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTCATTTAACCAAAATGCGATTCGTGTTCAGTTTAGTTAATTAGCTGGTGTTTCTTCTCAACGTTTTAGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAAGGCTAATGCTTTTCAGAT</pcr_primer_p1>
		<pcr_primer_p2>TGGTAGATTTTATCGAAGATTCA</pcr_primer_p2>
		<pcr_amplicon_size>726</pcr_amplicon_size>
		<canonical_amplicon>TCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCA</canonical_amplicon>
		<polymorphic_amplicon>TYGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21252</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>419275</contig_pos>
        <strand></strand>
        <context>TGTCAATTGA[A/C]AMTTGGAGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGA</left_flank>
        <right_flank>AATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCACTTTTTGGAGAATTTCGGATTTTTGGATCTTTTGTTGTCAAAAATCTGACGATTATGAATGTGTAAAATTAATTTTGATCTTGATTTAAAAAATTATTCATCATCGTTTTCTATTTTTTCCAAATTTTTGAAAAAAAAATTTTTAAAAACCCGAAATTTTCCAAAAAGTGAATTTTGTCGCCAAAAAAGTTGCTTTCCGTTTTCTGGGTTTCAGAATAGTTTTTTAAAGTTATTTGCTACATTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTCATTTAACCAAAATGCGATTCGTGTTCAGTTTAGTTAATTAGCTGGTGTTTCTTCTCAACGTTTTAGCAAATTAGAAAAAATATATACGAAGAGATAATCAGGAACCAGATTG</canonical>
            <polymorphic>TTCACTTTTTGGAGAATTTCGGATTTTTGGATCTTTTGTTGTCAAAAATCTGACGATTATGAATGTGTAAAATTAATTTTGATCTTGATTTAAAAAATTATTCATCATCGTTTTCTATTTTTTCCAAATTTTTGAAAAAAAAATTTTTAAAAACCCGAAATTTTCCAAAAAGTGAATTTTGTCGCCAAAAAAGTTGCTTTCCGTTTTCTGGGTTTCAGAATAGTTTTTTAAAGTTATTTGCTACATTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAMAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTCATTTAACCAAAATGCGATTCGTGTTCAGTTTAGTTAATTAGCTGGTGTTTCTTCTCAACGTTTTAGCAAATTAGAAAAAATATATACGAAGAGATAATCAGGAACCAGATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATACACCGTTCAAAACCAT</pcr_primer_p1>
		<pcr_primer_p2>AGTGCTAAATTTTGTATGCTGTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACT</canonical_amplicon>
		<polymorphic_amplicon>AAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAMAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21253</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>419287</contig_pos>
        <strand>+</strand>
        <context>MTTGGAGCTC[A/T]TATTTCTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTC</left_flank>
        <right_flank>TATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATTTCGGATTTTTGGATCTTTTGTTGTCAAAAATCTGACGATTATGAATGTGTAAAATTAATTTTGATCTTGATTTAAAAAATTATTCATCATCGTTTTCTATTTTTTCCAAATTTTTGAAAAAAAAATTTTTAAAAACCCGAAATTTTCCAAAAAGTGAATTTTGTCGCCAAAAAAGTTGCTTTCCGTTTTCTGGGTTTCAGAATAGTTTTTTAAAGTTATTTGCTACATTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTCATTTAACCAAAATGCGATTCGTGTTCAGTTTAGTTAATTAGCTGGTGTTTCTTCTCAACGTTTTAGCAAATTAGAAAAAATATATACGAAGAGATAATCAGGAACCAGATTGAACATGATAAAC</canonical>
            <polymorphic>AGAATTTCGGATTTTTGGATCTTTTGTTGTCAAAAATCTGACGATTATGAATGTGTAAAATTAATTTTGATCTTGATTTAAAAAATTATTCATCATCGTTTTCTATTTTTTCCAAATTTTTGAAAAAAAAATTTTTAAAAACCCGAAATTTTCCAAAAAGTGAATTTTGTCGCCAAAAAAGTTGCTTTCCGTTTTCTGGGTTTCAGAATAGTTTTTTAAAGTTATTTGCTACATTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCWTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTCATTTAACCAAAATGCGATTCGTGTTCAGTTTAGTTAATTAGCTGGTGTTTCTTCTCAACGTTTTAGCAAATTAGAAAAAATATATACGAAGAGATAATCAGGAACCAGATTGAACATGATAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATACACCGTTCAAAACCAT</pcr_primer_p1>
		<pcr_primer_p2>AGTGCTAAATTTTGTATGCTGTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACT</canonical_amplicon>
		<polymorphic_amplicon>AAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCWTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21254</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>419336</contig_pos>
        <strand>+</strand>
        <context>AGCTCCAAAG[A/G]CGGCTWATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAG</left_flank>
        <right_flank>CGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGTGTAAAATTAATTTTGATCTTGATTTAAAAAATTATTCATCATCGTTTTCTATTTTTTCCAAATTTTTGAAAAAAAAATTTTTAAAAACCCGAAATTTTCCAAAAAGTGAATTTTGTCGCCAAAAAAGTTGCTTTCCGTTTTCTGGGTTTCAGAATAGTTTTTTAAAGTTATTTGCTACATTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTCATTTAACCAAAATGCGATTCGTGTTCAGTTTAGTTAATTAGCTGGTGTTTCTTCTCAACGTTTTAGCAAATTAGAAAAAATATATACGAAGAGATAATCAGGAACCAGATTGAACATGATAAACAAAACAACCCCCATGAACATCATACTAACCAGTGAGAACTCGGTTTTGT</canonical>
            <polymorphic>AATGTGTAAAATTAATTTTGATCTTGATTTAAAAAATTATTCATCATCGTTTTCTATTTTTTCCAAATTTTTGAAAAAAAAATTTTTAAAAACCCGAAATTTTCCAAAAAGTGAATTTTGTCGCCAAAAAAGTTGCTTTCCGTTTTCTGGGTTTCAGAATAGTTTTTTAAAGTTATTTGCTACATTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGRCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTCATTTAACCAAAATGCGATTCGTGTTCAGTTTAGTTAATTAGCTGGTGTTTCTTCTCAACGTTTTAGCAAATTAGAAAAAATATATACGAAGAGATAATCAGGAACCAGATTGAACATGATAAACAAAACAACCCCCATGAACATCATACTAACCAGTGAGAACTCGGTTTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>497 272 231</canonical_bands>
                <polymorphic_bands>728 272</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATACACCGTTCAAAACCAT</pcr_primer_p1>
		<pcr_primer_p2>AGTGCTAAATTTTGTATGCTGTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACT</canonical_amplicon>
		<polymorphic_amplicon>AAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGRCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21255</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>419342</contig_pos>
        <strand>+</strand>
        <context>AAAGRCGGCT[A/T]ATTTTTAACA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCT</left_flank>
        <right_flank>ATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAATTAATTTTGATCTTGATTTAAAAAATTATTCATCATCGTTTTCTATTTTTTCCAAATTTTTGAAAAAAAAATTTTTAAAAACCCGAAATTTTCCAAAAAGTGAATTTTGTCGCCAAAAAAGTTGCTTTCCGTTTTCTGGGTTTCAGAATAGTTTTTTAAAGTTATTTGCTACATTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTCATTTAACCAAAATGCGATTCGTGTTCAGTTTAGTTAATTAGCTGGTGTTTCTTCTCAACGTTTTAGCAAATTAGAAAAAATATATACGAAGAGATAATCAGGAACCAGATTGAACATGATAAACAAAACAACCCCCATGAACATCATACTAACCAGTGAGAACTCGGTTTTGTTGAAGA</canonical>
            <polymorphic>TAAAATTAATTTTGATCTTGATTTAAAAAATTATTCATCATCGTTTTCTATTTTTTCCAAATTTTTGAAAAAAAAATTTTTAAAAACCCGAAATTTTCCAAAAAGTGAATTTTGTCGCCAAAAAAGTTGCTTTCCGTTTTCTGGGTTTCAGAATAGTTTTTTAAAGTTATTTGCTACATTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTWATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTCATTTAACCAAAATGCGATTCGTGTTCAGTTTAGTTAATTAGCTGGTGTTTCTTCTCAACGTTTTAGCAAATTAGAAAAAATATATACGAAGAGATAATCAGGAACCAGATTGAACATGATAAACAAAACAACCCCCATGAACATCATACTAACCAGTGAGAACTCGGTTTTGTTGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATACACCGTTCAAAACCAT</pcr_primer_p1>
		<pcr_primer_p2>AGTGCTAAATTTTGTATGCTGTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACT</canonical_amplicon>
		<polymorphic_amplicon>AAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTWATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21256</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>419363</contig_pos>
        <strand>+</strand>
        <context>AAAACAAGAA[A/T]TTAAATGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAA</left_flank>
        <right_flank>TTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAAAAAATTATTCATCATCGTTTTCTATTTTTTCCAAATTTTTGAAAAAAAAATTTTTAAAAACCCGAAATTTTCCAAAAAGTGAATTTTGTCGCCAAAAAAGTTGCTTTCCGTTTTCTGGGTTTCAGAATAGTTTTTTAAAGTTATTTGCTACATTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTCATTTAACCAAAATGCGATTCGTGTTCAGTTTAGTTAATTAGCTGGTGTTTCTTCTCAACGTTTTAGCAAATTAGAAAAAATATATACGAAGAGATAATCAGGAACCAGATTGAACATGATAAACAAAACAACCCCCATGAACATCATACTAACCAGTGAGAACTCGGTTTTGTTGAAGACGTCGATTTCGCGGTAAACTG</canonical>
            <polymorphic>TTTAAAAAATTATTCATCATCGTTTTCTATTTTTTCCAAATTTTTGAAAAAAAAATTTTTAAAAACCCGAAATTTTCCAAAAAGTGAATTTTGTCGCCAAAAAAGTTGCTTTCCGTTTTCTGGGTTTCAGAATAGTTTTTTAAAGTTATTTGCTACATTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAAWTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTCATTTAACCAAAATGCGATTCGTGTTCAGTTTAGTTAATTAGCTGGTGTTTCTTCTCAACGTTTTAGCAAATTAGAAAAAATATATACGAAGAGATAATCAGGAACCAGATTGAACATGATAAACAAAACAACCCCCATGAACATCATACTAACCAGTGAGAACTCGGTTTTGTTGAAGACGTCGATTTCGCGGTAAACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>411 411 67 38 25 17 16 15</canonical_bands>
                <polymorphic_bands>478 411 38 25 17 16 15</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>498 361 81 57 3</canonical_bands>
                <polymorphic_bands>859 81 57 3</polymorphic_bands>
            </assay>
            <assay>
                <site>ATTTAAAT</site>
                <isoschizomers>
                    <enzyme>SmiI</enzyme>
                    <enzyme>SwaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>195 177 132 85 69 67 61 33 31 28 20 17 16 15 15 15 10 7 7</canonical_bands>
                <polymorphic_bands>195 177 152 132 69 61 33 31 28 20 17 16 15 15 15 10 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATACACCGTTCAAAACCAT</pcr_primer_p1>
		<pcr_primer_p2>AGTGCTAAATTTTGTATGCTGTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACT</canonical_amplicon>
		<polymorphic_amplicon>AAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAAWTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21257</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>419502</contig_pos>
        <strand>+</strand>
        <context>CCGTCATCTT[A/C]ACTATACAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTT</left_flank>
        <right_flank>ACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAAAGTTATTTGCTACATTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTCATTTAACCAAAATGCGATTCGTGTTCAGTTTAGTTAATTAGCTGGTGTTTCTTCTCAACGTTTTAGCAAATTAGAAAAAATATATACGAAGAGATAATCAGGAACCAGATTGAACATGATAAACAAAACAACCCCCATGAACATCATACTAACCAGTGAGAACTCGGTTTTGTTGAAGACGTCGATTTCGCGGTAAACTGTATCCGTGTTCGTGGTTCGCTCCTTAATCTCGCCAAACTGCAAAACAAGAAGAGTTTAAATTAATCCTCCTGGATATTTCCGCGCATATATTCAGTGACCCGGATTGATTTGATACATTGTAATATTAGCAATTGTATT</canonical>
            <polymorphic>TTAAAGTTATTTGCTACATTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTMACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTCATTTAACCAAAATGCGATTCGTGTTCAGTTTAGTTAATTAGCTGGTGTTTCTTCTCAACGTTTTAGCAAATTAGAAAAAATATATACGAAGAGATAATCAGGAACCAGATTGAACATGATAAACAAAACAACCCCCATGAACATCATACTAACCAGTGAGAACTCGGTTTTGTTGAAGACGTCGATTTCGCGGTAAACTGTATCCGTGTTCGTGGTTCGCTCCTTAATCTCGCCAAACTGCAAAACAAGAAGAGTTTAAATTAATCCTCCTGGATATTTCCGCGCATATATTCAGTGACCCGGATTGATTTGATACATTGTAATATTAGCAATTGTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>344 190 166 78 77 59 32 31 17 5 1</canonical_bands>
                <polymorphic_bands>344 225 190 78 77 32 31 17 5 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGCATACAAAATTTAGCACTT</pcr_primer_p1>
		<pcr_primer_p2>GAGAGAAAACATGTTCCATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTC</canonical_amplicon>
		<polymorphic_amplicon>ACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTMACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21258</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>419515</contig_pos>
        <strand>+</strand>
        <context>TATACAAAGC[C/T]TTCCATACTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGC</left_flank>
        <right_flank>TTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTACATTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTCATTTAACCAAAATGCGATTCGTGTTCAGTTTAGTTAATTAGCTGGTGTTTCTTCTCAACGTTTTAGCAAATTAGAAAAAATATATACGAAGAGATAATCAGGAACCAGATTGAACATGATAAACAAAACAACCCCCATGAACATCATACTAACCAGTGAGAACTCGGTTTTGTTGAAGACGTCGATTTCGCGGTAAACTGTATCCGTGTTCGTGGTTCGCTCCTTAATCTCGCCAAACTGCAAAACAAGAAGAGTTTAAATTAATCCTCCTGGATATTTCCGCGCATATATTCAGTGACCCGGATTGATTTGATACATTGTAATATTAGCAATTGTATTAAGGGGAACACAT</canonical>
            <polymorphic>CTACATTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCYTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTCATTTAACCAAAATGCGATTCGTGTTCAGTTTAGTTAATTAGCTGGTGTTTCTTCTCAACGTTTTAGCAAATTAGAAAAAATATATACGAAGAGATAATCAGGAACCAGATTGAACATGATAAACAAAACAACCCCCATGAACATCATACTAACCAGTGAGAACTCGGTTTTGTTGAAGACGTCGATTTCGCGGTAAACTGTATCCGTGTTCGTGGTTCGCTCCTTAATCTCGCCAAACTGCAAAACAAGAAGAGTTTAAATTAATCCTCCTGGATATTTCCGCGCATATATTCAGTGACCCGGATTGATTTGATACATTGTAATATTAGCAATTGTATTAAGGGGAACACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>311 143 119 104 87 67 55 44 31 27 12</canonical_bands>
                <polymorphic_bands>311 223 143 87 67 55 44 31 27 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGCATACAAAATTTAGCACTT</pcr_primer_p1>
		<pcr_primer_p2>GAGAGAAAACATGTTCCATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTC</canonical_amplicon>
		<polymorphic_amplicon>ACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCYTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21259</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>419532</contig_pos>
        <strand>+</strand>
        <context>ACTCCTTATC[C/T]CTTACCTTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATC</left_flank>
        <right_flank>CTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTCATTTAACCAAAATGCGATTCGTGTTCAGTTTAGTTAATTAGCTGGTGTTTCTTCTCAACGTTTTAGCAAATTAGAAAAAATATATACGAAGAGATAATCAGGAACCAGATTGAACATGATAAACAAAACAACCCCCATGAACATCATACTAACCAGTGAGAACTCGGTTTTGTTGAAGACGTCGATTTCGCGGTAAACTGTATCCGTGTTCGTGGTTCGCTCCTTAATCTCGCCAAACTGCAAAACAAGAAGAGTTTAAATTAATCCTCCTGGATATTTCCGCGCATATATTCAGTGACCCGGATTGATTTGATACATTGTAATATTAGCAATTGTATTAAGGGGAACACATGTTCGGTTTTTTGAGCT</canonical>
            <polymorphic>GTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCYCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTCATTTAACCAAAATGCGATTCGTGTTCAGTTTAGTTAATTAGCTGGTGTTTCTTCTCAACGTTTTAGCAAATTAGAAAAAATATATACGAAGAGATAATCAGGAACCAGATTGAACATGATAAACAAAACAACCCCCATGAACATCATACTAACCAGTGAGAACTCGGTTTTGTTGAAGACGTCGATTTCGCGGTAAACTGTATCCGTGTTCGTGGTTCGCTCCTTAATCTCGCCAAACTGCAAAACAAGAAGAGTTTAAATTAATCCTCCTGGATATTTCCGCGCATATATTCAGTGACCCGGATTGATTTGATACATTGTAATATTAGCAATTGTATTAAGGGGAACACATGTTCGGTTTTTTGAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGCATACAAAATTTAGCACTT</pcr_primer_p1>
		<pcr_primer_p2>GAGAGAAAACATGTTCCATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTC</canonical_amplicon>
		<polymorphic_amplicon>ACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCYCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21260</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>419558</contig_pos>
        <strand>+</strand>
        <context>CGATGAAATC[G/T]CTTGATACGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATC</left_flank>
        <right_flank>CTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTCATTTAACCAAAATGCGATTCGTGTTCAGTTTAGTTAATTAGCTGGTGTTTCTTCTCAACGTTTTAGCAAATTAGAAAAAATATATACGAAGAGATAATCAGGAACCAGATTGAACATGATAAACAAAACAACCCCCATGAACATCATACTAACCAGTGAGAACTCGGTTTTGTTGAAGACGTCGATTTCGCGGTAAACTGTATCCGTGTTCGTGGTTCGCTCCTTAATCTCGCCAAACTGCAAAACAAGAAGAGTTTAAATTAATCCTCCTGGATATTTCCGCGCATATATTCAGTGACCCGGATTGATTTGATACATTGTAATATTAGCAATTGTATTAAGGGGAACACATGTTCGGTTTTTTGAGCTTCCCCCGAAGATGAGTGTTCTCATAT</canonical>
            <polymorphic>GAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCKCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTCATTTAACCAAAATGCGATTCGTGTTCAGTTTAGTTAATTAGCTGGTGTTTCTTCTCAACGTTTTAGCAAATTAGAAAAAATATATACGAAGAGATAATCAGGAACCAGATTGAACATGATAAACAAAACAACCCCCATGAACATCATACTAACCAGTGAGAACTCGGTTTTGTTGAAGACGTCGATTTCGCGGTAAACTGTATCCGTGTTCGTGGTTCGCTCCTTAATCTCGCCAAACTGCAAAACAAGAAGAGTTTAAATTAATCCTCCTGGATATTTCCGCGCATATATTCAGTGACCCGGATTGATTTGATACATTGTAATATTAGCAATTGTATTAAGGGGAACACATGTTCGGTTTTTTGAGCTTCCCCCGAAGATGAGTGTTCTCATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>494 275 231</canonical_bands>
                <polymorphic_bands>725 275</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGCATACAAAATTTAGCACTT</pcr_primer_p1>
		<pcr_primer_p2>GAGAGAAAACATGTTCCATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTC</canonical_amplicon>
		<polymorphic_amplicon>ACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCKCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21261</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>422731</contig_pos>
        <strand>+</strand>
        <context>GGCACATATC[C/T]ATAAATCACC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGAAAATAGGAAAAGAAAAGGAGTAAAAGTAGAAACCAAGGCACATATC</left_flank>
        <right_flank>ATAAATCACCTCAGCTTCCTGACGACAACACGTTTCAATGTCACAGTGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGGCCATTTTCAAAACGCAAGTGGGAACCCTACTCCACCTTTTGCCCTCCTCTCGTCGCATCCATTTCATATTATCAAAACTATTATTGCTTCTGCTAGGACCATCGAGATCTTCTTTCACAATTCAACAAAGATTCTGCTCCTCAGTCATTGTTTAGTCATGTATACATCTATACAGTATGATGGGGTAATTATTTTAGTGACGGATGGGACATCATGCTCAATTGCCACCCTTGGTTAATTACAGGTTCAATGTATCTGTCCTGAAGGAGGAGGTCAGATTGTCTTGGACCCTTACAATGGGAACATACTTAGAGGGAACGGAGAATTTAGATACCAATCTCTCCTTGATTTCTTTCTTTCTTACAAAAGCGCTGCGCGATCAAGCGAAAATCGAATATGGTGGGATGAAAGGCACATGAGTATCTGTATATGAGGAAACAGGAAAAGAAAATAGGAAAAGAAAAGGAGTAAAAGTAGAAACCAAGGCACATATCTATAAATCACCTCAGCTTCCTGACGACAACACGTTTCAATGTCACAGTGGACAGTATGCGGATATGCAAAAAAAGGGGGAGGCGAAAAACAAATGGTGAAGTTTCCTTTTTTTCCGACATGGTTAGTGAGAAGGGCCTGCCTAATGAGAGAGGTGACGGAAGCCGACTGGTTTTGAAAGGGAAGGATAGCAGAGCACTACTCCGTAATTATTGGCACCTCCTCTTATAGCCAGTACTTCTGGACGCGGCGGCATGGCGCGACCCATGTAATTGGCCGAAGGTTGGTGTTGTATGGAATGGGGATTTATAGAGCTTTGGAAATTATTCGGACAAATGGAAGGAGGAGGAGAAACGGAAGTATCAAGGGGAGACAGAGGAAATTGGAATTTTTTTTTAGTTTTGATTCAAAAAAATAGAAAAAATGATGGAAAACAAAAAAATACTATTTGGAAATATGATTGTCTGCGTTGCAAATTCTTGTCAGAATGGAGTAAAAGGGGC</canonical>
            <polymorphic>TAGGGCCATTTTCAAAACGCAAGTGGGAACCCTACTCCACCTTTTGCCCTCCTCTCGTCGCATCCATTTCATATTATCAAAACTATTATTGCTTCTGCTAGGACCATCGAGATCTTCTTTCACAATTCAACAAAGATTCTGCTCCTCAGTCATTGTTTAGTCATGTATACATCTATACAGTATGATGGGGTAATTATTTTAGTGACGGATGGGACATCATGCTCAATTGCCACCCTTGGTTAATTACAGGTTCAATGTATCTGTCCTGAAGGAGGAGGTCAGATTGTCTTGGACCCTTACAATGGGAACATACTTAGAGGGAACGGAGAATTTAGATACCAATCTCTCCTTGATTTCTTTCTTTCTTACAAAAGCGCTGCGCGATCAAGCGAAAATCGAATATGGTGGGATGAAAGGCACATGAGTATCTGTATATGAGGAAACAGGAAAAGAAAATAGGAAAAGAAAAGGAGTAAAAGTAGAAACCAAGGCACATATCYATAAATCACCTCAGCTTCCTGACGACAACACGTTTCAATGTCACAGTGGACAGTATGCGGATATGCAAAAAAAGGGGGAGGCGAAAAACAAATGGTGAAGTTTCCTTTTTTTCCGACATGGTTAGTGAGAAGGGCCTGCCTAATGAGAGAGGTGACGGAAGCCGACTGGTTTTGAAAGGGAAGGATAGCAGAGCACTACTCCGTAATTATTGGCACCTCCTCTTATAGCCAGTACTTCTGGACGCGGCGGCATGGCGCGACCCATGTAATTGGCCGAAGGTTGGTGTTGTATGGAATGGGGATTTATAGAGCTTTGGAAATTATTCGGACAAATGGAAGGAGGAGGAGAAACGGAAGTATCAAGGGGAGACAGAGGAAATTGGAATTTTTTTTTAGTTTTGATTCAAAAAAATAGAAAAAATGATGGAAAACAAAAAAATACTATTTGGAAATATGATTGTCTGCGTTGCAAATTCTTGTCAGAATGGAGTAAAAGGGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGGCACATGAGTATCTGTAT</pcr_primer_p1>
		<pcr_primer_p2>TTCCGTCACCTCTCTCATTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAAGGCACATGAGTATCTGTATATGAGGAAACAGGAAAAGAAAATAGGAAAAGAAAAGGAGTAAAAGTAGAAACCAAGGCACATATCTATAAATCACCTCAGCTTCCTGACGACAACACGTTTCAATGTCACAGTGGACAGTATGCGGATATGCAAAAAAAGGGGGAGGCGAAAAACAAATGGTGAAGTTTCCTTTTTTTCCGACATGGTTAGTGAGAAGGGCCTGCCTAATGAGAGAGGTGACGGAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAGGCACATGAGTATCTGTATATGAGGAAACAGGAAAAGAAAATAGGAAAAGAAAAGGAGTAAAAGTAGAAACCAAGGCACATATCYATAAATCACCTCAGCTTCCTGACGACAACACGTTTCAATGTCACAGTGGACAGTATGCGGATATGCAAAAAAAGGGGGAGGCGAAAAACAAATGGTGAAGTTTCCTTTTTTTCCGACATGGTTAGTGAGAAGGGCCTGCCTAATGAGAGAGGTGACGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21262</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>422680</contig_pos>
        <strand>+</strand>
        <context>GGAAWCAGGA[A/C]AAGAAAATAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATATGGTGGGATGAAAGGCACATGAGTATCTGTATATGAGGAAACAGGA</left_flank>
        <right_flank>AAGAAAATAGGAAAAGAAAAGGAGTAAAAGTAGAAACCAAGGCACATATC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCACACACACACACACACGTACACACTCAGTTTTCCCTCATAACCATCTGGTAGGGCCATTTTCAAAACGCAAGTGGGAACCCTACTCCACCTTTTGCCCTCCTCTCGTCGCATCCATTTCATATTATCAAAACTATTATTGCTTCTGCTAGGACCATCGAGATCTTCTTTCACAATTCAACAAAGATTCTGCTCCTCAGTCATTGTTTAGTCATGTATACATCTATACAGTATGATGGGGTAATTATTTTAGTGACGGATGGGACATCATGCTCAATTGCCACCCTTGGTTAATTACAGGTTCAATGTATCTGTCCTGAAGGAGGAGGTCAGATTGTCTTGGACCCTTACAATGGGAACATACTTAGAGGGAACGGAGAATTTAGATACCAATCTCTCCTTGATTTCTTTCTTTCTTACAAAAGCGCTGCGCGATCAAGCGAAAATCGAATATGGTGGGATGAAAGGCACATGAGTATCTGTATATGAGGAAACAGGAAAAGAAAATAGGAAAAGAAAAGGAGTAAAAGTAGAAACCAAGGCACATATCTATAAATCACCTCAGCTTCCTGACGACAACACGTTTCAATGTCACAGTGGACAGTATGCGGATATGCAAAAAAAGGGGGAGGCGAAAAACAAATGGTGAAGTTTCCTTTTTTTCCGACATGGTTAGTGAGAAGGGCCTGCCTAATGAGAGAGGTGACGGAAGCCGACTGGTTTTGAAAGGGAAGGATAGCAGAGCACTACTCCGTAATTATTGGCACCTCCTCTTATAGCCAGTACTTCTGGACGCGGCGGCATGGCGCGACCCATGTAATTGGCCGAAGGTTGGTGTTGTATGGAATGGGGATTTATAGAGCTTTGGAAATTATTCGGACAAATGGAAGGAGGAGGAGAAACGGAAGTATCAAGGGGAGACAGAGGAAATTGGAATTTTTTTTTAGTTTTGATTCAAAAAAATAGAAAAAATGATGGAAAACAAAAAAATACTATTTGG</canonical>
            <polymorphic>GCACACACACACACACACGTACACACTCAGTTTTCCCTCATAACCATCTGGTAGGGCCATTTTCAAAACGCAAGTGGGAACCCTACTCCACCTTTTGCCCTCCTCTCGTCGCATCCATTTCATATTATCAAAACTATTATTGCTTCTGCTAGGACCATCGAGATCTTCTTTCACAATTCAACAAAGATTCTGCTCCTCAGTCATTGTTTAGTCATGTATACATCTATACAGTATGATGGGGTAATTATTTTAGTGACGGATGGGACATCATGCTCAATTGCCACCCTTGGTTAATTACAGGTTCAATGTATCTGTCCTGAAGGAGGAGGTCAGATTGTCTTGGACCCTTACAATGGGAACATACTTAGAGGGAACGGAGAATTTAGATACCAATCTCTCCTTGATTTCTTTCTTTCTTACAAAAGCGCTGCGCGATCAAGCGAAAATCGAATATGGTGGGATGAAAGGCACATGAGTATCTGTATATGAGGAAACAGGAMAAGAAAATAGGAAAAGAAAAGGAGTAAAAGTAGAAACCAAGGCACATATCTATAAATCACCTCAGCTTCCTGACGACAACACGTTTCAATGTCACAGTGGACAGTATGCGGATATGCAAAAAAAGGGGGAGGCGAAAAACAAATGGTGAAGTTTCCTTTTTTTCCGACATGGTTAGTGAGAAGGGCCTGCCTAATGAGAGAGGTGACGGAAGCCGACTGGTTTTGAAAGGGAAGGATAGCAGAGCACTACTCCGTAATTATTGGCACCTCCTCTTATAGCCAGTACTTCTGGACGCGGCGGCATGGCGCGACCCATGTAATTGGCCGAAGGTTGGTGTTGTATGGAATGGGGATTTATAGAGCTTTGGAAATTATTCGGACAAATGGAAGGAGGAGGAGAAACGGAAGTATCAAGGGGAGACAGAGGAAATTGGAATTTTTTTTTAGTTTTGATTCAAAAAAATAGAAAAAATGATGGAAAACAAAAAAATACTATTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTGATTTCTTTCTTTCTTACA</pcr_primer_p1>
		<pcr_primer_p2>GAAACTTCACCATTTGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>CCTTGATTTCTTTCTTTCTTACAAAAGCGCTGCGCGATCAAGCGAAAATCGAATATGGTGGGATGAAAGGCACATGAGTATCTGTATATGAGGAAACAGGAAAAGAAAATAGGAAAAGAAAAGGAGTAAAAGTAGAAACCAAGGCACATATCTATAAATCACCTCAGCTTCCTGACGACAACACGTTTCAATGTCACAGTGGACAGTATGCGGATATGCAAAAAAAGGGGGAGGCGAAAAACAAATGGTGAAGTTTC</canonical_amplicon>
		<polymorphic_amplicon>CCTTGATTTCTTTCTTTCTTACAAAAGCGCTGCGCGATCAAGCGAAAATCGAATATGGTGGGATGAAAGGCACATGAGTATCTGTATATGAGGAAACAGGAMAAGAAAATAGGAAAAGAAAAGGAGTAAAAGTAGAAACCAAGGCACATATCTATAAATCACCTCAGCTTCCTGACGACAACACGTTTCAATGTCACAGTGGACAGTATGCGGATATGCAAAAAAAGGGGGAGGCGAAAAACAAATGGTGAAGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21263</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>422674</contig_pos>
        <strand>+</strand>
        <context>ATATGAGGAA[A/T]CAGGAMAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATCGAATATGGTGGGATGAAAGGCACATGAGTATCTGTATATGAGGAA</left_flank>
        <right_flank>CAGGAAAAGAAAATAGGAAAAGAAAAGGAGTAAAAGTAGAAACCAAGGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATGAGCACACACACACACACACGTACACACTCAGTTTTCCCTCATAACCATCTGGTAGGGCCATTTTCAAAACGCAAGTGGGAACCCTACTCCACCTTTTGCCCTCCTCTCGTCGCATCCATTTCATATTATCAAAACTATTATTGCTTCTGCTAGGACCATCGAGATCTTCTTTCACAATTCAACAAAGATTCTGCTCCTCAGTCATTGTTTAGTCATGTATACATCTATACAGTATGATGGGGTAATTATTTTAGTGACGGATGGGACATCATGCTCAATTGCCACCCTTGGTTAATTACAGGTTCAATGTATCTGTCCTGAAGGAGGAGGTCAGATTGTCTTGGACCCTTACAATGGGAACATACTTAGAGGGAACGGAGAATTTAGATACCAATCTCTCCTTGATTTCTTTCTTTCTTACAAAAGCGCTGCGCGATCAAGCGAAAATCGAATATGGTGGGATGAAAGGCACATGAGTATCTGTATATGAGGAAACAGGAAAAGAAAATAGGAAAAGAAAAGGAGTAAAAGTAGAAACCAAGGCACATATCTATAAATCACCTCAGCTTCCTGACGACAACACGTTTCAATGTCACAGTGGACAGTATGCGGATATGCAAAAAAAGGGGGAGGCGAAAAACAAATGGTGAAGTTTCCTTTTTTTCCGACATGGTTAGTGAGAAGGGCCTGCCTAATGAGAGAGGTGACGGAAGCCGACTGGTTTTGAAAGGGAAGGATAGCAGAGCACTACTCCGTAATTATTGGCACCTCCTCTTATAGCCAGTACTTCTGGACGCGGCGGCATGGCGCGACCCATGTAATTGGCCGAAGGTTGGTGTTGTATGGAATGGGGATTTATAGAGCTTTGGAAATTATTCGGACAAATGGAAGGAGGAGGAGAAACGGAAGTATCAAGGGGAGACAGAGGAAATTGGAATTTTTTTTTAGTTTTGATTCAAAAAAATAGAAAAAATGATGGAAAACAAAAAAATACT</canonical>
            <polymorphic>TTATGAGCACACACACACACACACGTACACACTCAGTTTTCCCTCATAACCATCTGGTAGGGCCATTTTCAAAACGCAAGTGGGAACCCTACTCCACCTTTTGCCCTCCTCTCGTCGCATCCATTTCATATTATCAAAACTATTATTGCTTCTGCTAGGACCATCGAGATCTTCTTTCACAATTCAACAAAGATTCTGCTCCTCAGTCATTGTTTAGTCATGTATACATCTATACAGTATGATGGGGTAATTATTTTAGTGACGGATGGGACATCATGCTCAATTGCCACCCTTGGTTAATTACAGGTTCAATGTATCTGTCCTGAAGGAGGAGGTCAGATTGTCTTGGACCCTTACAATGGGAACATACTTAGAGGGAACGGAGAATTTAGATACCAATCTCTCCTTGATTTCTTTCTTTCTTACAAAAGCGCTGCGCGATCAAGCGAAAATCGAATATGGTGGGATGAAAGGCACATGAGTATCTGTATATGAGGAAWCAGGAAAAGAAAATAGGAAAAGAAAAGGAGTAAAAGTAGAAACCAAGGCACATATCTATAAATCACCTCAGCTTCCTGACGACAACACGTTTCAATGTCACAGTGGACAGTATGCGGATATGCAAAAAAAGGGGGAGGCGAAAAACAAATGGTGAAGTTTCCTTTTTTTCCGACATGGTTAGTGAGAAGGGCCTGCCTAATGAGAGAGGTGACGGAAGCCGACTGGTTTTGAAAGGGAAGGATAGCAGAGCACTACTCCGTAATTATTGGCACCTCCTCTTATAGCCAGTACTTCTGGACGCGGCGGCATGGCGCGACCCATGTAATTGGCCGAAGGTTGGTGTTGTATGGAATGGGGATTTATAGAGCTTTGGAAATTATTCGGACAAATGGAAGGAGGAGGAGAAACGGAAGTATCAAGGGGAGACAGAGGAAATTGGAATTTTTTTTTAGTTTTGATTCAAAAAAATAGAAAAAATGATGGAAAACAAAAAAATACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTGATTTCTTTCTTTCTTACA</pcr_primer_p1>
		<pcr_primer_p2>GAAACTTCACCATTTGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>CCTTGATTTCTTTCTTTCTTACAAAAGCGCTGCGCGATCAAGCGAAAATCGAATATGGTGGGATGAAAGGCACATGAGTATCTGTATATGAGGAAACAGGAAAAGAAAATAGGAAAAGAAAAGGAGTAAAAGTAGAAACCAAGGCACATATCTATAAATCACCTCAGCTTCCTGACGACAACACGTTTCAATGTCACAGTGGACAGTATGCGGATATGCAAAAAAAGGGGGAGGCGAAAAACAAATGGTGAAGTTTC</canonical_amplicon>
		<polymorphic_amplicon>CCTTGATTTCTTTCTTTCTTACAAAAGCGCTGCGCGATCAAGCGAAAATCGAATATGGTGGGATGAAAGGCACATGAGTATCTGTATATGAGGAAWCAGGAAAAGAAAATAGGAAAAGAAAAGGAGTAAAAGTAGAAACCAAGGCACATATCTATAAATCACCTCAGCTTCCTGACGACAACACGTTTCAATGTCACAGTGGACAGTATGCGGATATGCAAAAAAAGGGGGAGGCGAAAAACAAATGGTGAAGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21264</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>422367</contig_pos>
        <strand>+</strand>
        <context>TTCAACAAAG[A/C]TTCTGCTCCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTATTGCTTCTGCTAGGACCATCGAGATCTTCTTTCACAATTCAACAAAG</left_flank>
        <right_flank>TTCTGCTCCTCAGTCATTGTTTAGTCATGTATACATCTATACAGTATGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTCAAGTTCAGAAGCTAGATGAGGCAATTCGAGATTCTCAAAGGCTCACAAATATAAAATCCGTGCTGAAAAATTTTTCAAATCGGCGAAAAGCTTTCTGGCGAATTGAAAAATTGTTGAGAGTGAGAAAAATATATTGAGCAACTTCTGGTGGTGAGGATCATCGGGTGAATTACGAGCTGGGGATGGGAAAATTGCGAAAAGTGCCCTCCTACCTCGGGTGGAAGCCACTTATTTATATTTAACTCATGATGAGGCAAGCGTGAGATGAGATGTGGAAGGGTGGAGTAAAACGAAATGGATGATTATGAGCACACACACACACACACGTACACACTCAGTTTTCCCTCATAACCATCTGGTAGGGCCATTTTCAAAACGCAAGTGGGAACCCTACTCCACCTTTTGCCCTCCTCTCGTCGCATCCATTTCATATTATCAAAACTATTATTGCTTCTGCTAGGACCATCGAGATCTTCTTTCACAATTCAACAAAGATTCTGCTCCTCAGTCATTGTTTAGTCATGTATACATCTATACAGTATGATGGGGTAATTATTTTAGTGACGGATGGGACATCATGCTCAATTGCCACCCTTGGTTAATTACAGGTTCAATGTATCTGTCCTGAAGGAGGAGGTCAGATTGTCTTGGACCCTTACAATGGGAACATACTTAGAGGGAACGGAGAATTTAGATACCAATCTCTCCTTGATTTCTTTCTTTCTTACAAAAGCGCTGCGCGATCAAGCGAAAATCGAATATGGTGGGATGAAAGGCACATGAGTATCTGTATATGAGGAAACAGGAAAAGAAAATAGGAAAAGAAAAGGAGTAAAAGTAGAAACCAAGGCACATATCTATAAATCACCTCAGCTTCCTGACGACAACACGTTTCAATGTCACAGTGGACAGTATGCGGATATGCAAAAAAAGGGGGAGGCGAAAAACAAATGGTGAAGTTTCCTTTTTTTCCGACATGGTTAGTGAGAAGGGCC</canonical>
            <polymorphic>AATTCAAGTTCAGAAGCTAGATGAGGCAATTCGAGATTCTCAAAGGCTCACAAATATAAAATCCGTGCTGAAAAATTTTTCAAATCGGCGAAAAGCTTTCTGGCGAATTGAAAAATTGTTGAGAGTGAGAAAAATATATTGAGCAACTTCTGGTGGTGAGGATCATCGGGTGAATTACGAGCTGGGGATGGGAAAATTGCGAAAAGTGCCCTCCTACCTCGGGTGGAAGCCACTTATTTATATTTAACTCATGATGAGGCAAGCGTGAGATGAGATGTGGAAGGGTGGAGTAAAACGAAATGGATGATTATGAGCACACACACACACACACGTACACACTCAGTTTTCCCTCATAACCATCTGGTAGGGCCATTTTCAAAACGCAAGTGGGAACCCTACTCCACCTTTTGCCCTCCTCTCGTCGCATCCATTTCATATTATCAAAACTATTATTGCTTCTGCTAGGACCATCGAGATCTTCTTTCACAATTCAACAAAGMTTCTGCTCCTCAGTCATTGTTTAGTCATGTATACATCTATACAGTATGATGGGGTAATTATTTTAGTGACGGATGGGACATCATGCTCAATTGCCACCCTTGGTTAATTACAGGTTCAATGTATCTGTCCTGAAGGAGGAGGTCAGATTGTCTTGGACCCTTACAATGGGAACATACTTAGAGGGAACGGAGAATTTAGATACCAATCTCTCCTTGATTTCTTTCTTTCTTACAAAAGCGCTGCGCGATCAAGCGAAAATCGAATATGGTGGGATGAAAGGCACATGAGTATCTGTATATGAGGAAACAGGAAAAGAAAATAGGAAAAGAAAAGGAGTAAAAGTAGAAACCAAGGCACATATCTATAAATCACCTCAGCTTCCTGACGACAACACGTTTCAATGTCACAGTGGACAGTATGCGGATATGCAAAAAAAGGGGGAGGCGAAAAACAAATGGTGAAGTTTCCTTTTTTTCCGACATGGTTAGTGAGAAGGGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>501 464 35</canonical_bands>
                <polymorphic_bands>965 35</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 464 35</canonical_bands>
                <polymorphic_bands>965 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCGCATCCATTTCATATTATC</pcr_primer_p1>
		<pcr_primer_p2>CATTGTAAGGGTCCAAGACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTCGCATCCATTTCATATTATCAAAACTATTATTGCTTCTGCTAGGACCATCGAGATCTTCTTTCACAATTCAACAAAGATTCTGCTCCTCAGTCATTGTTTAGTCATGTATACATCTATACAGTATGATGGGGTAATTATTTTAGTGACGGATGGGACATCATGCTCAATTGCCACCCTTGGTTAATTACAGGTTCAATGTATCTGTCCTGAAGGAGGAGGTCAGATTGTCTTGGACCCTTACAATG</canonical_amplicon>
		<polymorphic_amplicon>GTCGCATCCATTTCATATTATCAAAACTATTATTGCTTCTGCTAGGACCATCGAGATCTTCTTTCACAATTCAACAAAGMTTCTGCTCCTCAGTCATTGTTTAGTCATGTATACATCTATACAGTATGATGGGGTAATTATTTTAGTGACGGATGGGACATCATGCTCAATTGCCACCCTTGGTTAATTACAGGTTCAATGTATCTGTCCTGAAGGAGGAGGTCAGATTGTCTTGGACCCTTACAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21265</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>422330</contig_pos>
        <strand>+</strand>
        <context>TTGCTTCTGC[G/T]AGGACCATCG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCCTCTCGTCGCATCCATTTCATATTATCAAAACTATTATTGCTTCTGC</left_flank>
        <right_flank>AGGACCATCGAGATCTTCTTTCACAATTCAACAAAGATTCTGCTCCTCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCATGTGAAATGAGATTTTGGTTTTTTAAAGCCCTGAATTCAAGTTCAGAAGCTAGATGAGGCAATTCGAGATTCTCAAAGGCTCACAAATATAAAATCCGTGCTGAAAAATTTTTCAAATCGGCGAAAAGCTTTCTGGCGAATTGAAAAATTGTTGAGAGTGAGAAAAATATATTGAGCAACTTCTGGTGGTGAGGATCATCGGGTGAATTACGAGCTGGGGATGGGAAAATTGCGAAAAGTGCCCTCCTACCTCGGGTGGAAGCCACTTATTTATATTTAACTCATGATGAGGCAAGCGTGAGATGAGATGTGGAAGGGTGGAGTAAAACGAAATGGATGATTATGAGCACACACACACACACACGTACACACTCAGTTTTCCCTCATAACCATCTGGTAGGGCCATTTTCAAAACGCAAGTGGGAACCCTACTCCACCTTTTGCCCTCCTCTCGTCGCATCCATTTCATATTATCAAAACTATTATTGCTTCTGCTAGGACCATCGAGATCTTCTTTCACAATTCAACAAAGATTCTGCTCCTCAGTCATTGTTTAGTCATGTATACATCTATACAGTATGATGGGGTAATTATTTTAGTGACGGATGGGACATCATGCTCAATTGCCACCCTTGGTTAATTACAGGTTCAATGTATCTGTCCTGAAGGAGGAGGTCAGATTGTCTTGGACCCTTACAATGGGAACATACTTAGAGGGAACGGAGAATTTAGATACCAATCTCTCCTTGATTTCTTTCTTTCTTACAAAAGCGCTGCGCGATCAAGCGAAAATCGAATATGGTGGGATGAAAGGCACATGAGTATCTGTATATGAGGAAACAGGAAAAGAAAATAGGAAAAGAAAAGGAGTAAAAGTAGAAACCAAGGCACATATCTATAAATCACCTCAGCTTCCTGACGACAACACGTTTCAATGTCACAGTGGACAGTATGCGGATATGCAAAAAAAGGGGGAGGCGAAAAACAAATGGTGAA</canonical>
            <polymorphic>TGCATGTGAAATGAGATTTTGGTTTTTTAAAGCCCTGAATTCAAGTTCAGAAGCTAGATGAGGCAATTCGAGATTCTCAAAGGCTCACAAATATAAAATCCGTGCTGAAAAATTTTTCAAATCGGCGAAAAGCTTTCTGGCGAATTGAAAAATTGTTGAGAGTGAGAAAAATATATTGAGCAACTTCTGGTGGTGAGGATCATCGGGTGAATTACGAGCTGGGGATGGGAAAATTGCGAAAAGTGCCCTCCTACCTCGGGTGGAAGCCACTTATTTATATTTAACTCATGATGAGGCAAGCGTGAGATGAGATGTGGAAGGGTGGAGTAAAACGAAATGGATGATTATGAGCACACACACACACACACGTACACACTCAGTTTTCCCTCATAACCATCTGGTAGGGCCATTTTCAAAACGCAAGTGGGAACCCTACTCCACCTTTTGCCCTCCTCTCGTCGCATCCATTTCATATTATCAAAACTATTATTGCTTCTGCKAGGACCATCGAGATCTTCTTTCACAATTCAACAAAGATTCTGCTCCTCAGTCATTGTTTAGTCATGTATACATCTATACAGTATGATGGGGTAATTATTTTAGTGACGGATGGGACATCATGCTCAATTGCCACCCTTGGTTAATTACAGGTTCAATGTATCTGTCCTGAAGGAGGAGGTCAGATTGTCTTGGACCCTTACAATGGGAACATACTTAGAGGGAACGGAGAATTTAGATACCAATCTCTCCTTGATTTCTTTCTTTCTTACAAAAGCGCTGCGCGATCAAGCGAAAATCGAATATGGTGGGATGAAAGGCACATGAGTATCTGTATATGAGGAAACAGGAAAAGAAAATAGGAAAAGAAAAGGAGTAAAAGTAGAAACCAAGGCACATATCTATAAATCACCTCAGCTTCCTGACGACAACACGTTTCAATGTCACAGTGGACAGTATGCGGATATGCAAAAAAAGGGGGAGGCGAAAAACAAATGGTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 445 54</canonical_bands>
                <polymorphic_bands>946 54</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTAAAACGAAATGGATGATTA</pcr_primer_p1>
		<pcr_primer_p2>ATGACTAAACAATGACTGAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GAGTAAAACGAAATGGATGATTATGAGCACACACACACACACACGTACACACTCAGTTTTCCCTCATAACCATCTGGTAGGGCCATTTTCAAAACGCAAGTGGGAACCCTACTCCACCTTTTGCCCTCCTCTCGTCGCATCCATTTCATATTATCAAAACTATTATTGCTTCTGCTAGGACCATCGAGATCTTCTTTCACAATTCAACAAAGATTCTGCTCCTCAGTCATTGTTTAGTCAT</canonical_amplicon>
		<polymorphic_amplicon>GAGTAAAACGAAATGGATGATTATGAGCACACACACACACACACGTACACACTCAGTTTTCCCTCATAACCATCTGGTAGGGCCATTTTCAAAACGCAAGTGGGAACCCTACTCCACCTTTTGCCCTCCTCTCGTCGCATCCATTTCATATTATCAAAACTATTATTGCTTCTGCKAGGACCATCGAGATCTTCTTTCACAATTCAACAAAGATTCTGCTCCTCAGTCATTGTTTAGTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21266</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>447997</contig_pos>
        <strand>+</strand>
        <context>AAATGCCCTG[A/G]TTCGAAATTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGTTGACCAAAGTGCTAGTCTGCTGATTAGAGCTTATAGAAATGCCCTG</left_flank>
        <right_flank>TTCGAAATTAGCCCTTTAACATAAGTCACAAATTTTCAAAACTTATGGTG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGGACGAAGAAACAGTGGGCGAATTCTTTTTCTGTTTTTTTTTTTGGTCACCTGGACCACTCAAAAAAGTGCCGACGAAAATTTTTGAAGTTCGAAAGGGAGGAAAAGAATGTTTGAATCAGCGTCACCTGTTATGTGCTAAAAATCAAGCGGAAAATCAAAAGTCGCCACGGGAGGCGTAGAAGCCACTATGTCAGGTTTTTCTTTGCAAAATTATGCATGTGAAAAATGAGAGGAGTAGTTGTGTCTGGAAACTAGATCTATAAATAAATACAGTAGGATGTTTTAGAGAGATTCACAAAAATATAACTCTTTCTCGGAAATCAATTTCCTGAAATTTTCCTTTTTTTTAGCAATTTTTCCAAAACTCATTTTCAGAAAGAAAATTATTTTTGCTCAAAAGTTTGAACTTTTCGAATGATCAAAAATCTTAAAATTTCGTTTTCCTGGTTGACCAAAGTGCTAGTCTGCTGATTAGAGCTTATAGAAATGCCCTGGTTCGAAATTAGCCCTTTAACATAAGTCACAAATTTTCAAAACTTATGGTGCACTAAAGCCATTTCCTGATTAGTAAAAATCTAAATTTCTTGTGAGTTCTATAGCCAGAGATCTCTCAGGGAAATTTCTAGTCTTTATTTGAAGCTTTTGGGAAAATCATAATCTCTATAACGTAATCAGTCCTAATCCTCCCCATAAATAGCTTTAATTATTGAAAAAACTGCTTTCATTAGCATCTGAAAACCGCAAACCTGACTTCCTCTAAATTGAGCCTATTCATAGCAACAGCCGTGAAAAAAACACCACATCAGGACCAACAACAGAGAATAGAAGGATGGATAATGAAGCATCCATTGTTGTGTTCAGGCTGTCCGATTTAAGGGCTACGTCCGCTAATCTATCGCCTTACAATAACCATTGCGGCCGGGGGCGCGCACGCTCGCACGACGGCCCGACGACGGGACTAATGTAATGTTTCCAGGTGACCCGTCGCCCGCCCA</canonical>
            <polymorphic>GGAGGACGAAGAAACAGTGGGCGAATTCTTTTTCTGTTTTTTTTTTTGGTCACCTGGACCACTCAAAAAAGTGCCGACGAAAATTTTTGAAGTTCGAAAGGGAGGAAAAGAATGTTTGAATCAGCGTCACCTGTTATGTGCTAAAAATCAAGCGGAAAATCAAAAGTCGCCACGGGAGGCGTAGAAGCCACTATGTCAGGTTTTTCTTTGCAAAATTATGCATGTGAAAAATGAGAGGAGTAGTTGTGTCTGGAAACTAGATCTATAAATAAATACAGTAGGATGTTTTAGAGAGATTCACAAAAATATAACTCTTTCTCGGAAATCAATTTCCTGAAATTTTCCTTTTTTTTAGCAATTTTTCCAAAACTCATTTTCAGAAAGAAAATTATTTTTGCTCAAAAGTTTGAACTTTTCGAATGATCAAAAATCTTAAAATTTCGTTTTCCTGGTTGACCAAAGTGCTAGTCTGCTGATTAGAGCTTATAGAAATGCCCTGRTTCGAAATTAGCCCTTTAACATAAGTCACAAATTTTCAAAACTTATGGTGCACTAAAGCCATTTCCTGATTAGTAAAAATCTAAATTTCTTGTGAGTTCTATAGCCAGAGATCTCTCAGGGAAATTTCTAGTCTTTATTTGAAGCTTTTGGGAAAATCATAATCTCTATAACGTAATCAGTCCTAATCCTCCCCATAAATAGCTTTAATTATTGAAAAAACTGCTTTCATTAGCATCTGAAAACCGCAAACCTGACTTCCTCTAAATTGAGCCTATTCATAGCAACAGCCGTGAAAAAAACACCACATCAGGACCAACAACAGAGAATAGAAGGATGGATAATGAAGCATCCATTGTTGTGTTCAGGCTGTCCGATTTAAGGGCTACGTCCGCTAATCTATCGCCTTACAATAACCATTGCGGCCGGGGGCGCGCACGCTCGCACGACGGCCCGACGACGGGACTAATGTAATGTTTCCAGGTGACCCGTCGCCCGCCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>428 395 54 54 48 21</canonical_bands>
                <polymorphic_bands>476 395 54 54 21</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>429 325 170 76</canonical_bands>
                <polymorphic_bands>754 170 76</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>482 395 54 48 21</canonical_bands>
                <polymorphic_bands>530 395 54 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAACTCATTTTCAGAAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>GATCTCTGGCTATAGAACTCACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAAACTCATTTTCAGAAAGAAAATTATTTTTGCTCAAAAGTTTGAACTTTTCGAATGATCAAAAATCTTAAAATTTCGTTTTCCTGGTTGACCAAAGTGCTAGTCTGCTGATTAGAGCTTATAGAAATGCCCTGGTTCGAAATTAGCCCTTTAACATAAGTCACAAATTTTCAAAACTTATGGTGCACTAAAGCCATTTCCTGATTAGTAAAAATCTAAATTTCTTGTGAGTTCTATAGCCAGAGATC</canonical_amplicon>
		<polymorphic_amplicon>CAAAACTCATTTTCAGAAAGAAAATTATTTTTGCTCAAAAGTTTGAACTTTTCGAATGATCAAAAATCTTAAAATTTCGTTTTCCTGGTTGACCAAAGTGCTAGTCTGCTGATTAGAGCTTATAGAAATGCCCTGRTTCGAAATTAGCCCTTTAACATAAGTCACAAATTTTCAAAACTTATGGTGCACTAAAGCCATTTCCTGATTAGTAAAAATCTAAATTTCTTGTGAGTTCTATAGCCAGAGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21267</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>448045</contig_pos>
        <strand>+</strand>
        <context>AAAACTTATG[C/G]TGCACTAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGGTTCGAAATTAGCCCTTTAACATAAGTCACAAATTTTCAAAACTTATG</left_flank>
        <right_flank>TGCACTAAAGCCATTTCCTGATTAGTAAAAATCTAAATTTCTTGTGAGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCACCTGGACCACTCAAAAAAGTGCCGACGAAAATTTTTGAAGTTCGAAAGGGAGGAAAAGAATGTTTGAATCAGCGTCACCTGTTATGTGCTAAAAATCAAGCGGAAAATCAAAAGTCGCCACGGGAGGCGTAGAAGCCACTATGTCAGGTTTTTCTTTGCAAAATTATGCATGTGAAAAATGAGAGGAGTAGTTGTGTCTGGAAACTAGATCTATAAATAAATACAGTAGGATGTTTTAGAGAGATTCACAAAAATATAACTCTTTCTCGGAAATCAATTTCCTGAAATTTTCCTTTTTTTTAGCAATTTTTCCAAAACTCATTTTCAGAAAGAAAATTATTTTTGCTCAAAAGTTTGAACTTTTCGAATGATCAAAAATCTTAAAATTTCGTTTTCCTGGTTGACCAAAGTGCTAGTCTGCTGATTAGAGCTTATAGAAATGCCCTGGTTCGAAATTAGCCCTTTAACATAAGTCACAAATTTTCAAAACTTATGGTGCACTAAAGCCATTTCCTGATTAGTAAAAATCTAAATTTCTTGTGAGTTCTATAGCCAGAGATCTCTCAGGGAAATTTCTAGTCTTTATTTGAAGCTTTTGGGAAAATCATAATCTCTATAACGTAATCAGTCCTAATCCTCCCCATAAATAGCTTTAATTATTGAAAAAACTGCTTTCATTAGCATCTGAAAACCGCAAACCTGACTTCCTCTAAATTGAGCCTATTCATAGCAACAGCCGTGAAAAAAACACCACATCAGGACCAACAACAGAGAATAGAAGGATGGATAATGAAGCATCCATTGTTGTGTTCAGGCTGTCCGATTTAAGGGCTACGTCCGCTAATCTATCGCCTTACAATAACCATTGCGGCCGGGGGCGCGCACGCTCGCACGACGGCCCGACGACGGGACTAATGTAATGTTTCCAGGTGACCCGTCGCCCGCCCATCCGCCAATTTTCAGGCTCCGCCCCTCCCTTCTTCCTCTTTTTCTCTC</canonical>
            <polymorphic>GTCACCTGGACCACTCAAAAAAGTGCCGACGAAAATTTTTGAAGTTCGAAAGGGAGGAAAAGAATGTTTGAATCAGCGTCACCTGTTATGTGCTAAAAATCAAGCGGAAAATCAAAAGTCGCCACGGGAGGCGTAGAAGCCACTATGTCAGGTTTTTCTTTGCAAAATTATGCATGTGAAAAATGAGAGGAGTAGTTGTGTCTGGAAACTAGATCTATAAATAAATACAGTAGGATGTTTTAGAGAGATTCACAAAAATATAACTCTTTCTCGGAAATCAATTTCCTGAAATTTTCCTTTTTTTTAGCAATTTTTCCAAAACTCATTTTCAGAAAGAAAATTATTTTTGCTCAAAAGTTTGAACTTTTCGAATGATCAAAAATCTTAAAATTTCGTTTTCCTGGTTGACCAAAGTGCTAGTCTGCTGATTAGAGCTTATAGAAATGCCCTGGTTCGAAATTAGCCCTTTAACATAAGTCACAAATTTTCAAAACTTATGSTGCACTAAAGCCATTTCCTGATTAGTAAAAATCTAAATTTCTTGTGAGTTCTATAGCCAGAGATCTCTCAGGGAAATTTCTAGTCTTTATTTGAAGCTTTTGGGAAAATCATAATCTCTATAACGTAATCAGTCCTAATCCTCCCCATAAATAGCTTTAATTATTGAAAAAACTGCTTTCATTAGCATCTGAAAACCGCAAACCTGACTTCCTCTAAATTGAGCCTATTCATAGCAACAGCCGTGAAAAAAACACCACATCAGGACCAACAACAGAGAATAGAAGGATGGATAATGAAGCATCCATTGTTGTGTTCAGGCTGTCCGATTTAAGGGCTACGTCCGCTAATCTATCGCCTTACAATAACCATTGCGGCCGGGGGCGCGCACGCTCGCACGACGGCCCGACGACGGGACTAATGTAATGTTTCCAGGTGACCCGTCGCCCGCCCATCCGCCAATTTTCAGGCTCCGCCCCTCCCTTCTTCCTCTTTTTCTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTGCAC</site>
                <isoschizomers>
                    <enzyme>Alw44I</enzyme>
                    <enzyme>ApaLI</enzyme>
                    <enzyme>VneI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>199 164 75 64 64 56 56 52 42 40 36 32 22 22 18 12 11 9 9 8 4 3 2</canonical_bands>
                <polymorphic_bands>199 164 75 64 64 56 56 52 42 40 36 32 24 22 18 12 11 9 9 8 4 3</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 406 96</canonical_bands>
                <polymorphic_bands>594 406</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAACTCATTTTCAGAAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>GATCTCTGGCTATAGAACTCACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAAACTCATTTTCAGAAAGAAAATTATTTTTGCTCAAAAGTTTGAACTTTTCGAATGATCAAAAATCTTAAAATTTCGTTTTCCTGGTTGACCAAAGTGCTAGTCTGCTGATTAGAGCTTATAGAAATGCCCTGGTTCGAAATTAGCCCTTTAACATAAGTCACAAATTTTCAAAACTTATGGTGCACTAAAGCCATTTCCTGATTAGTAAAAATCTAAATTTCTTGTGAGTTCTATAGCCAGAGATC</canonical_amplicon>
		<polymorphic_amplicon>CAAAACTCATTTTCAGAAAGAAAATTATTTTTGCTCAAAAGTTTGAACTTTTCGAATGATCAAAAATCTTAAAATTTCGTTTTCCTGGTTGACCAAAGTGCTAGTCTGCTGATTAGAGCTTATAGAAATGCCCTGGTTCGAAATTAGCCCTTTAACATAAGTCACAAATTTTCAAAACTTATGSTGCACTAAAGCCATTTCCTGATTAGTAAAAATCTAAATTTCTTGTGAGTTCTATAGCCAGAGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21268</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>448116</contig_pos>
        <strand>+</strand>
        <context>AGATCTCTCA[C/G]GRAAMTTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTAGTAAAAATCTAAATTTCTTGTGAGTTCTATAGCCAGAGATCTCTCA</left_flank>
        <right_flank>GGAAATTTCTAGTCTTTATTTGAAGCTTTTGGGAAAATCATAATCTCTAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAGCGTCACCTGTTATGTGCTAAAAATCAAGCGGAAAATCAAAAGTCGCCACGGGAGGCGTAGAAGCCACTATGTCAGGTTTTTCTTTGCAAAATTATGCATGTGAAAAATGAGAGGAGTAGTTGTGTCTGGAAACTAGATCTATAAATAAATACAGTAGGATGTTTTAGAGAGATTCACAAAAATATAACTCTTTCTCGGAAATCAATTTCCTGAAATTTTCCTTTTTTTTAGCAATTTTTCCAAAACTCATTTTCAGAAAGAAAATTATTTTTGCTCAAAAGTTTGAACTTTTCGAATGATCAAAAATCTTAAAATTTCGTTTTCCTGGTTGACCAAAGTGCTAGTCTGCTGATTAGAGCTTATAGAAATGCCCTGGTTCGAAATTAGCCCTTTAACATAAGTCACAAATTTTCAAAACTTATGGTGCACTAAAGCCATTTCCTGATTAGTAAAAATCTAAATTTCTTGTGAGTTCTATAGCCAGAGATCTCTCAGGGAAATTTCTAGTCTTTATTTGAAGCTTTTGGGAAAATCATAATCTCTATAACGTAATCAGTCCTAATCCTCCCCATAAATAGCTTTAATTATTGAAAAAACTGCTTTCATTAGCATCTGAAAACCGCAAACCTGACTTCCTCTAAATTGAGCCTATTCATAGCAACAGCCGTGAAAAAAACACCACATCAGGACCAACAACAGAGAATAGAAGGATGGATAATGAAGCATCCATTGTTGTGTTCAGGCTGTCCGATTTAAGGGCTACGTCCGCTAATCTATCGCCTTACAATAACCATTGCGGCCGGGGGCGCGCACGCTCGCACGACGGCCCGACGACGGGACTAATGTAATGTTTCCAGGTGACCCGTCGCCCGCCCATCCGCCAATTTTCAGGCTCCGCCCCTCCCTTCTTCCTCTTTTTCTCTCACTGTTACCCGTCAATCTCTGCGCACGATAATGCTTGGGTTAGTTAGGTAGTTTGAGAGAAGAAGGGAGAA</canonical>
            <polymorphic>ATCAGCGTCACCTGTTATGTGCTAAAAATCAAGCGGAAAATCAAAAGTCGCCACGGGAGGCGTAGAAGCCACTATGTCAGGTTTTTCTTTGCAAAATTATGCATGTGAAAAATGAGAGGAGTAGTTGTGTCTGGAAACTAGATCTATAAATAAATACAGTAGGATGTTTTAGAGAGATTCACAAAAATATAACTCTTTCTCGGAAATCAATTTCCTGAAATTTTCCTTTTTTTTAGCAATTTTTCCAAAACTCATTTTCAGAAAGAAAATTATTTTTGCTCAAAAGTTTGAACTTTTCGAATGATCAAAAATCTTAAAATTTCGTTTTCCTGGTTGACCAAAGTGCTAGTCTGCTGATTAGAGCTTATAGAAATGCCCTGGTTCGAAATTAGCCCTTTAACATAAGTCACAAATTTTCAAAACTTATGGTGCACTAAAGCCATTTCCTGATTAGTAAAAATCTAAATTTCTTGTGAGTTCTATAGCCAGAGATCTCTCASGGAAATTTCTAGTCTTTATTTGAAGCTTTTGGGAAAATCATAATCTCTATAACGTAATCAGTCCTAATCCTCCCCATAAATAGCTTTAATTATTGAAAAAACTGCTTTCATTAGCATCTGAAAACCGCAAACCTGACTTCCTCTAAATTGAGCCTATTCATAGCAACAGCCGTGAAAAAAACACCACATCAGGACCAACAACAGAGAATAGAAGGATGGATAATGAAGCATCCATTGTTGTGTTCAGGCTGTCCGATTTAAGGGCTACGTCCGCTAATCTATCGCCTTACAATAACCATTGCGGCCGGGGGCGCGCACGCTCGCACGACGGCCCGACGACGGGACTAATGTAATGTTTCCAGGTGACCCGTCGCCCGCCCATCCGCCAATTTTCAGGCTCCGCCCCTCCCTTCTTCCTCTTTTTCTCTCACTGTTACCCGTCAATCTCTGCGCACGATAATGCTTGGGTTAGTTAGGTAGTTTGAGAGAAGAAGGGAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGACCAAAGTGCTAGTCTG</pcr_primer_p1>
		<pcr_primer_p2>TATTTATGGGGAGGATTAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTGACCAAAGTGCTAGTCTGCTGATTAGAGCTTATAGAAATGCCCTGGTTCGAAATTAGCCCTTTAACATAAGTCACAAATTTTCAAAACTTATGGTGCACTAAAGCCATTTCCTGATTAGTAAAAATCTAAATTTCTTGTGAGTTCTATAGCCAGAGATCTCTCAGGGAAATTTCTAGTCTTTATTTGAAGCTTTTGGGAAAATCATAATCTCTATAACGTAATCAGTCCTAATCCTCCCCATAAATA</canonical_amplicon>
		<polymorphic_amplicon>GTTGACCAAAGTGCTAGTCTGCTGATTAGAGCTTATAGAAATGCCCTGGTTCGAAATTAGCCCTTTAACATAAGTCACAAATTTTCAAAACTTATGGTGCACTAAAGCCATTTCCTGATTAGTAAAAATCTAAATTTCTTGTGAGTTCTATAGCCAGAGATCTCTCASGGAAATTTCTAGTCTTTATTTGAAGCTTTTGGGAAAATCATAATCTCTATAACGTAATCAGTCCTAATCCTCCCCATAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21269</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>448118</contig_pos>
        <strand>+</strand>
        <context>ATCTCTCASG[A/G]AAMTTTCTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGTAAAAATCTAAATTTCTTGTGAGTTCTATAGCCAGAGATCTCTCAGG</left_flank>
        <right_flank>AAATTTCTAGTCTTTATTTGAAGCTTTTGGGAAAATCATAATCTCTATAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCGTCACCTGTTATGTGCTAAAAATCAAGCGGAAAATCAAAAGTCGCCACGGGAGGCGTAGAAGCCACTATGTCAGGTTTTTCTTTGCAAAATTATGCATGTGAAAAATGAGAGGAGTAGTTGTGTCTGGAAACTAGATCTATAAATAAATACAGTAGGATGTTTTAGAGAGATTCACAAAAATATAACTCTTTCTCGGAAATCAATTTCCTGAAATTTTCCTTTTTTTTAGCAATTTTTCCAAAACTCATTTTCAGAAAGAAAATTATTTTTGCTCAAAAGTTTGAACTTTTCGAATGATCAAAAATCTTAAAATTTCGTTTTCCTGGTTGACCAAAGTGCTAGTCTGCTGATTAGAGCTTATAGAAATGCCCTGGTTCGAAATTAGCCCTTTAACATAAGTCACAAATTTTCAAAACTTATGGTGCACTAAAGCCATTTCCTGATTAGTAAAAATCTAAATTTCTTGTGAGTTCTATAGCCAGAGATCTCTCAGGGAAATTTCTAGTCTTTATTTGAAGCTTTTGGGAAAATCATAATCTCTATAACGTAATCAGTCCTAATCCTCCCCATAAATAGCTTTAATTATTGAAAAAACTGCTTTCATTAGCATCTGAAAACCGCAAACCTGACTTCCTCTAAATTGAGCCTATTCATAGCAACAGCCGTGAAAAAAACACCACATCAGGACCAACAACAGAGAATAGAAGGATGGATAATGAAGCATCCATTGTTGTGTTCAGGCTGTCCGATTTAAGGGCTACGTCCGCTAATCTATCGCCTTACAATAACCATTGCGGCCGGGGGCGCGCACGCTCGCACGACGGCCCGACGACGGGACTAATGTAATGTTTCCAGGTGACCCGTCGCCCGCCCATCCGCCAATTTTCAGGCTCCGCCCCTCCCTTCTTCCTCTTTTTCTCTCACTGTTACCCGTCAATCTCTGCGCACGATAATGCTTGGGTTAGTTAGGTAGTTTGAGAGAAGAAGGGAGAATC</canonical>
            <polymorphic>CAGCGTCACCTGTTATGTGCTAAAAATCAAGCGGAAAATCAAAAGTCGCCACGGGAGGCGTAGAAGCCACTATGTCAGGTTTTTCTTTGCAAAATTATGCATGTGAAAAATGAGAGGAGTAGTTGTGTCTGGAAACTAGATCTATAAATAAATACAGTAGGATGTTTTAGAGAGATTCACAAAAATATAACTCTTTCTCGGAAATCAATTTCCTGAAATTTTCCTTTTTTTTAGCAATTTTTCCAAAACTCATTTTCAGAAAGAAAATTATTTTTGCTCAAAAGTTTGAACTTTTCGAATGATCAAAAATCTTAAAATTTCGTTTTCCTGGTTGACCAAAGTGCTAGTCTGCTGATTAGAGCTTATAGAAATGCCCTGGTTCGAAATTAGCCCTTTAACATAAGTCACAAATTTTCAAAACTTATGGTGCACTAAAGCCATTTCCTGATTAGTAAAAATCTAAATTTCTTGTGAGTTCTATAGCCAGAGATCTCTCAGGRAAATTTCTAGTCTTTATTTGAAGCTTTTGGGAAAATCATAATCTCTATAACGTAATCAGTCCTAATCCTCCCCATAAATAGCTTTAATTATTGAAAAAACTGCTTTCATTAGCATCTGAAAACCGCAAACCTGACTTCCTCTAAATTGAGCCTATTCATAGCAACAGCCGTGAAAAAAACACCACATCAGGACCAACAACAGAGAATAGAAGGATGGATAATGAAGCATCCATTGTTGTGTTCAGGCTGTCCGATTTAAGGGCTACGTCCGCTAATCTATCGCCTTACAATAACCATTGCGGCCGGGGGCGCGCACGCTCGCACGACGGCCCGACGACGGGACTAATGTAATGTTTCCAGGTGACCCGTCGCCCGCCCATCCGCCAATTTTCAGGCTCCGCCCCTCCCTTCTTCCTCTTTTTCTCTCACTGTTACCCGTCAATCTCTGCGCACGATAATGCTTGGGTTAGTTAGGTAGTTTGAGAGAAGAAGGGAGAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGACCAAAGTGCTAGTCTG</pcr_primer_p1>
		<pcr_primer_p2>TATTTATGGGGAGGATTAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTGACCAAAGTGCTAGTCTGCTGATTAGAGCTTATAGAAATGCCCTGGTTCGAAATTAGCCCTTTAACATAAGTCACAAATTTTCAAAACTTATGGTGCACTAAAGCCATTTCCTGATTAGTAAAAATCTAAATTTCTTGTGAGTTCTATAGCCAGAGATCTCTCAGGGAAATTTCTAGTCTTTATTTGAAGCTTTTGGGAAAATCATAATCTCTATAACGTAATCAGTCCTAATCCTCCCCATAAATA</canonical_amplicon>
		<polymorphic_amplicon>GTTGACCAAAGTGCTAGTCTGCTGATTAGAGCTTATAGAAATGCCCTGGTTCGAAATTAGCCCTTTAACATAAGTCACAAATTTTCAAAACTTATGGTGCACTAAAGCCATTTCCTGATTAGTAAAAATCTAAATTTCTTGTGAGTTCTATAGCCAGAGATCTCTCAGGRAAATTTCTAGTCTTTATTTGAAGCTTTTGGGAAAATCATAATCTCTATAACGTAATCAGTCCTAATCCTCCCCATAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21270</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>448121</contig_pos>
        <strand>+</strand>
        <context>TCTCASGRAA[A/C]TTTCTAGTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAAAAATCTAAATTTCTTGTGAGTTCTATAGCCAGAGATCTCTCAGGGAA</left_flank>
        <right_flank>TTTCTAGTCTTTATTTGAAGCTTTTGGGAAAATCATAATCTCTATAACGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTCACCTGTTATGTGCTAAAAATCAAGCGGAAAATCAAAAGTCGCCACGGGAGGCGTAGAAGCCACTATGTCAGGTTTTTCTTTGCAAAATTATGCATGTGAAAAATGAGAGGAGTAGTTGTGTCTGGAAACTAGATCTATAAATAAATACAGTAGGATGTTTTAGAGAGATTCACAAAAATATAACTCTTTCTCGGAAATCAATTTCCTGAAATTTTCCTTTTTTTTAGCAATTTTTCCAAAACTCATTTTCAGAAAGAAAATTATTTTTGCTCAAAAGTTTGAACTTTTCGAATGATCAAAAATCTTAAAATTTCGTTTTCCTGGTTGACCAAAGTGCTAGTCTGCTGATTAGAGCTTATAGAAATGCCCTGGTTCGAAATTAGCCCTTTAACATAAGTCACAAATTTTCAAAACTTATGGTGCACTAAAGCCATTTCCTGATTAGTAAAAATCTAAATTTCTTGTGAGTTCTATAGCCAGAGATCTCTCAGGGAAATTTCTAGTCTTTATTTGAAGCTTTTGGGAAAATCATAATCTCTATAACGTAATCAGTCCTAATCCTCCCCATAAATAGCTTTAATTATTGAAAAAACTGCTTTCATTAGCATCTGAAAACCGCAAACCTGACTTCCTCTAAATTGAGCCTATTCATAGCAACAGCCGTGAAAAAAACACCACATCAGGACCAACAACAGAGAATAGAAGGATGGATAATGAAGCATCCATTGTTGTGTTCAGGCTGTCCGATTTAAGGGCTACGTCCGCTAATCTATCGCCTTACAATAACCATTGCGGCCGGGGGCGCGCACGCTCGCACGACGGCCCGACGACGGGACTAATGTAATGTTTCCAGGTGACCCGTCGCCCGCCCATCCGCCAATTTTCAGGCTCCGCCCCTCCCTTCTTCCTCTTTTTCTCTCACTGTTACCCGTCAATCTCTGCGCACGATAATGCTTGGGTTAGTTAGGTAGTTTGAGAGAAGAAGGGAGAATCGGA</canonical>
            <polymorphic>CGTCACCTGTTATGTGCTAAAAATCAAGCGGAAAATCAAAAGTCGCCACGGGAGGCGTAGAAGCCACTATGTCAGGTTTTTCTTTGCAAAATTATGCATGTGAAAAATGAGAGGAGTAGTTGTGTCTGGAAACTAGATCTATAAATAAATACAGTAGGATGTTTTAGAGAGATTCACAAAAATATAACTCTTTCTCGGAAATCAATTTCCTGAAATTTTCCTTTTTTTTAGCAATTTTTCCAAAACTCATTTTCAGAAAGAAAATTATTTTTGCTCAAAAGTTTGAACTTTTCGAATGATCAAAAATCTTAAAATTTCGTTTTCCTGGTTGACCAAAGTGCTAGTCTGCTGATTAGAGCTTATAGAAATGCCCTGGTTCGAAATTAGCCCTTTAACATAAGTCACAAATTTTCAAAACTTATGGTGCACTAAAGCCATTTCCTGATTAGTAAAAATCTAAATTTCTTGTGAGTTCTATAGCCAGAGATCTCTCAGGGAAMTTTCTAGTCTTTATTTGAAGCTTTTGGGAAAATCATAATCTCTATAACGTAATCAGTCCTAATCCTCCCCATAAATAGCTTTAATTATTGAAAAAACTGCTTTCATTAGCATCTGAAAACCGCAAACCTGACTTCCTCTAAATTGAGCCTATTCATAGCAACAGCCGTGAAAAAAACACCACATCAGGACCAACAACAGAGAATAGAAGGATGGATAATGAAGCATCCATTGTTGTGTTCAGGCTGTCCGATTTAAGGGCTACGTCCGCTAATCTATCGCCTTACAATAACCATTGCGGCCGGGGGCGCGCACGCTCGCACGACGGCCCGACGACGGGACTAATGTAATGTTTCCAGGTGACCCGTCGCCCGCCCATCCGCCAATTTTCAGGCTCCGCCCCTCCCTTCTTCCTCTTTTTCTCTCACTGTTACCCGTCAATCTCTGCGCACGATAATGCTTGGGTTAGTTAGGTAGTTTGAGAGAAGAAGGGAGAATCGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>502 213 99 94 53 39</canonical_bands>
                <polymorphic_bands>541 213 99 94 53</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>242 118 114 89 84 69 58 53 50 39 30 25 19 10</canonical_bands>
                <polymorphic_bands>242 123 118 114 89 69 58 53 50 30 25 19 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGACCAAAGTGCTAGTCTG</pcr_primer_p1>
		<pcr_primer_p2>TATTTATGGGGAGGATTAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTGACCAAAGTGCTAGTCTGCTGATTAGAGCTTATAGAAATGCCCTGGTTCGAAATTAGCCCTTTAACATAAGTCACAAATTTTCAAAACTTATGGTGCACTAAAGCCATTTCCTGATTAGTAAAAATCTAAATTTCTTGTGAGTTCTATAGCCAGAGATCTCTCAGGGAAATTTCTAGTCTTTATTTGAAGCTTTTGGGAAAATCATAATCTCTATAACGTAATCAGTCCTAATCCTCCCCATAAATA</canonical_amplicon>
		<polymorphic_amplicon>GTTGACCAAAGTGCTAGTCTGCTGATTAGAGCTTATAGAAATGCCCTGGTTCGAAATTAGCCCTTTAACATAAGTCACAAATTTTCAAAACTTATGGTGCACTAAAGCCATTTCCTGATTAGTAAAAATCTAAATTTCTTGTGAGTTCTATAGCCAGAGATCTCTCAGGGAAMTTTCTAGTCTTTATTTGAAGCTTTTGGGAAAATCATAATCTCTATAACGTAATCAGTCCTAATCCTCCCCATAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21271</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>448240</contig_pos>
        <strand>+</strand>
        <context>GCATCTGAAA[A/G]CCGCAAACCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCATAAATAGCTTTAATTATTGAAAAAACTGCTTTCATTAGCATCTGAAA</left_flank>
        <right_flank>CCGCAAACCTGACTTCCTCTAAATTGAGCCTATTCATAGCAACAGCCGTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTGTCTGGAAACTAGATCTATAAATAAATACAGTAGGATGTTTTAGAGAGATTCACAAAAATATAACTCTTTCTCGGAAATCAATTTCCTGAAATTTTCCTTTTTTTTAGCAATTTTTCCAAAACTCATTTTCAGAAAGAAAATTATTTTTGCTCAAAAGTTTGAACTTTTCGAATGATCAAAAATCTTAAAATTTCGTTTTCCTGGTTGACCAAAGTGCTAGTCTGCTGATTAGAGCTTATAGAAATGCCCTGGTTCGAAATTAGCCCTTTAACATAAGTCACAAATTTTCAAAACTTATGGTGCACTAAAGCCATTTCCTGATTAGTAAAAATCTAAATTTCTTGTGAGTTCTATAGCCAGAGATCTCTCAGGGAAATTTCTAGTCTTTATTTGAAGCTTTTGGGAAAATCATAATCTCTATAACGTAATCAGTCCTAATCCTCCCCATAAATAGCTTTAATTATTGAAAAAACTGCTTTCATTAGCATCTGAAAACCGCAAACCTGACTTCCTCTAAATTGAGCCTATTCATAGCAACAGCCGTGAAAAAAACACCACATCAGGACCAACAACAGAGAATAGAAGGATGGATAATGAAGCATCCATTGTTGTGTTCAGGCTGTCCGATTTAAGGGCTACGTCCGCTAATCTATCGCCTTACAATAACCATTGCGGCCGGGGGCGCGCACGCTCGCACGACGGCCCGACGACGGGACTAATGTAATGTTTCCAGGTGACCCGTCGCCCGCCCATCCGCCAATTTTCAGGCTCCGCCCCTCCCTTCTTCCTCTTTTTCTCTCACTGTTACCCGTCAATCTCTGCGCACGATAATGCTTGGGTTAGTTAGGTAGTTTGAGAGAAGAAGGGAGAATCGGAATCGGAGGCGGCGCCATCGTCGCCCATAACATATATCCGAAATTGCGGAGAACAATGAAATTTCGTGTGTGACGCTGGTGGGAAGAGGCCTTCTAGGCCATCTGAAGGCCGTTTCAGAG</canonical>
            <polymorphic>TTGTGTCTGGAAACTAGATCTATAAATAAATACAGTAGGATGTTTTAGAGAGATTCACAAAAATATAACTCTTTCTCGGAAATCAATTTCCTGAAATTTTCCTTTTTTTTAGCAATTTTTCCAAAACTCATTTTCAGAAAGAAAATTATTTTTGCTCAAAAGTTTGAACTTTTCGAATGATCAAAAATCTTAAAATTTCGTTTTCCTGGTTGACCAAAGTGCTAGTCTGCTGATTAGAGCTTATAGAAATGCCCTGGTTCGAAATTAGCCCTTTAACATAAGTCACAAATTTTCAAAACTTATGGTGCACTAAAGCCATTTCCTGATTAGTAAAAATCTAAATTTCTTGTGAGTTCTATAGCCAGAGATCTCTCAGGGAAATTTCTAGTCTTTATTTGAAGCTTTTGGGAAAATCATAATCTCTATAACGTAATCAGTCCTAATCCTCCCCATAAATAGCTTTAATTATTGAAAAAACTGCTTTCATTAGCATCTGAAARCCGCAAACCTGACTTCCTCTAAATTGAGCCTATTCATAGCAACAGCCGTGAAAAAAACACCACATCAGGACCAACAACAGAGAATAGAAGGATGGATAATGAAGCATCCATTGTTGTGTTCAGGCTGTCCGATTTAAGGGCTACGTCCGCTAATCTATCGCCTTACAATAACCATTGCGGCCGGGGGCGCGCACGCTCGCACGACGGCCCGACGACGGGACTAATGTAATGTTTCCAGGTGACCCGTCGCCCGCCCATCCGCCAATTTTCAGGCTCCGCCCCTCCCTTCTTCCTCTTTTTCTCTCACTGTTACCCGTCAATCTCTGCGCACGATAATGCTTGGGTTAGTTAGGTAGTTTGAGAGAAGAAGGGAGAATCGGAATCGGAGGCGGCGCCATCGTCGCCCATAACATATATCCGAAATTGCGGAGAACAATGAAATTTCGTGTGTGACGCTGGTGGGAAGAGGCCTTCTAGGCCATCTGAAGGCCGTTTCAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACGTAATCAGTCCTAATCCTC</pcr_primer_p1>
		<pcr_primer_p2>ATGGTTATTGTAAGGCGATAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAACGTAATCAGTCCTAATCCTCCCCATAAATAGCTTTAATTATTGAAAAAACTGCTTTCATTAGCATCTGAAAACCGCAAACCTGACTTCCTCTAAATTGAGCCTATTCATAGCAACAGCCGTGAAAAAAACACCACATCAGGACCAACAACAGAGAATAGAAGGATGGATAATGAAGCATCCATTGTTGTGTTCAGGCTGTCCGATTTAAGGGCTACGTCCGCTAATCTATCGCCTTACAATAACCAT</canonical_amplicon>
		<polymorphic_amplicon>TAACGTAATCAGTCCTAATCCTCCCCATAAATAGCTTTAATTATTGAAAAAACTGCTTTCATTAGCATCTGAAARCCGCAAACCTGACTTCCTCTAAATTGAGCCTATTCATAGCAACAGCCGTGAAAAAAACACCACATCAGGACCAACAACAGAGAATAGAAGGATGGATAATGAAGCATCCATTGTTGTGTTCAGGCTGTCCGATTTAAGGGCTACGTCCGCTAATCTATCGCCTTACAATAACCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21272</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>448385</contig_pos>
        <strand>+</strand>
        <context>TAAGGGCTAC[C/G]TCCGCTAATC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GATAATGAAGCATCCATTGTTGTGTTCAGGCTGTCCGATTTAAGGGCTAC</left_flank>
        <right_flank>TCCGCTAATCTATCGCCTTACAATAACCATTGCGGCCGGGGGCGCGCACG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATTTTTGCTCAAAAGTTTGAACTTTTCGAATGATCAAAAATCTTAAAATTTCGTTTTCCTGGTTGACCAAAGTGCTAGTCTGCTGATTAGAGCTTATAGAAATGCCCTGGTTCGAAATTAGCCCTTTAACATAAGTCACAAATTTTCAAAACTTATGGTGCACTAAAGCCATTTCCTGATTAGTAAAAATCTAAATTTCTTGTGAGTTCTATAGCCAGAGATCTCTCAGGGAAATTTCTAGTCTTTATTTGAAGCTTTTGGGAAAATCATAATCTCTATAACGTAATCAGTCCTAATCCTCCCCATAAATAGCTTTAATTATTGAAAAAACTGCTTTCATTAGCATCTGAAAACCGCAAACCTGACTTCCTCTAAATTGAGCCTATTCATAGCAACAGCCGTGAAAAAAACACCACATCAGGACCAACAACAGAGAATAGAAGGATGGATAATGAAGCATCCATTGTTGTGTTCAGGCTGTCCGATTTAAGGGCTACGTCCGCTAATCTATCGCCTTACAATAACCATTGCGGCCGGGGGCGCGCACGCTCGCACGACGGCCCGACGACGGGACTAATGTAATGTTTCCAGGTGACCCGTCGCCCGCCCATCCGCCAATTTTCAGGCTCCGCCCCTCCCTTCTTCCTCTTTTTCTCTCACTGTTACCCGTCAATCTCTGCGCACGATAATGCTTGGGTTAGTTAGGTAGTTTGAGAGAAGAAGGGAGAATCGGAATCGGAGGCGGCGCCATCGTCGCCCATAACATATATCCGAAATTGCGGAGAACAATGAAATTTCGTGTGTGACGCTGGTGGGAAGAGGCCTTCTAGGCCATCTGAAGGCCGTTTCAGAGAGAGAGAGCGATATTTCGGAAGAACACAATTGCCTCCTGTAGATTACTGTACTTACCCTATTTGCGTGGTAATTATACAACCAGGTATCGAATTCAGGCTTGAGAAGACGGAGAAAGAAGGACGTTGGAGAAAAAAAATCCTCTC</canonical>
            <polymorphic>TTATTTTTGCTCAAAAGTTTGAACTTTTCGAATGATCAAAAATCTTAAAATTTCGTTTTCCTGGTTGACCAAAGTGCTAGTCTGCTGATTAGAGCTTATAGAAATGCCCTGGTTCGAAATTAGCCCTTTAACATAAGTCACAAATTTTCAAAACTTATGGTGCACTAAAGCCATTTCCTGATTAGTAAAAATCTAAATTTCTTGTGAGTTCTATAGCCAGAGATCTCTCAGGGAAATTTCTAGTCTTTATTTGAAGCTTTTGGGAAAATCATAATCTCTATAACGTAATCAGTCCTAATCCTCCCCATAAATAGCTTTAATTATTGAAAAAACTGCTTTCATTAGCATCTGAAAACCGCAAACCTGACTTCCTCTAAATTGAGCCTATTCATAGCAACAGCCGTGAAAAAAACACCACATCAGGACCAACAACAGAGAATAGAAGGATGGATAATGAAGCATCCATTGTTGTGTTCAGGCTGTCCGATTTAAGGGCTACSTCCGCTAATCTATCGCCTTACAATAACCATTGCGGCCGGGGGCGCGCACGCTCGCACGACGGCCCGACGACGGGACTAATGTAATGTTTCCAGGTGACCCGTCGCCCGCCCATCCGCCAATTTTCAGGCTCCGCCCCTCCCTTCTTCCTCTTTTTCTCTCACTGTTACCCGTCAATCTCTGCGCACGATAATGCTTGGGTTAGTTAGGTAGTTTGAGAGAAGAAGGGAGAATCGGAATCGGAGGCGGCGCCATCGTCGCCCATAACATATATCCGAAATTGCGGAGAACAATGAAATTTCGTGTGTGACGCTGGTGGGAAGAGGCCTTCTAGGCCATCTGAAGGCCGTTTCAGAGAGAGAGAGCGATATTTCGGAAGAACACAATTGCCTCCTGTAGATTACTGTACTTACCCTATTTGCGTGGTAATTATACAACCAGGTATCGAATTCAGGCTTGAGAAGACGGAGAAAGAAGGACGTTGGAGAAAAAAAATCCTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>479 283 215 23</canonical_bands>
                <polymorphic_bands>694 283 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGACCAACAACAGAGAATAGA</pcr_primer_p1>
		<pcr_primer_p2>GGGTAACAGTGAGAGAAAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGGACCAACAACAGAGAATAGAAGGATGGATAATGAAGCATCCATTGTTGTGTTCAGGCTGTCCGATTTAAGGGCTACGTCCGCTAATCTATCGCCTTACAATAACCATTGCGGCCGGGGGCGCGCACGCTCGCACGACGGCCCGACGACGGGACTAATGTAATGTTTCCAGGTGACCCGTCGCCCGCCCATCCGCCAATTTTCAGGCTCCGCCCCTCCCTTCTTCCTCTTTTTCTCTCACTGTTACCC</canonical_amplicon>
		<polymorphic_amplicon>AGGACCAACAACAGAGAATAGAAGGATGGATAATGAAGCATCCATTGTTGTGTTCAGGCTGTCCGATTTAAGGGCTACSTCCGCTAATCTATCGCCTTACAATAACCATTGCGGCCGGGGGCGCGCACGCTCGCACGACGGCCCGACGACGGGACTAATGTAATGTTTCCAGGTGACCCGTCGCCCGCCCATCCGCCAATTTTCAGGCTCCGCCCCTCCCTTCTTCCTCTTTTTCTCTCACTGTTACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21277</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>448649</contig_pos>
        <strand>+</strand>
        <context>CGTCGCCCAT[A/C]ACATATATCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGAGAGAAGAAGGGAGAATCGGAATCGGAGGCGGCGCCATCGTCGCCCAT</left_flank>
        <right_flank>ACATATATCCGAAATTGCGGAGAACAATGAAATTTCGTGTGTGACGCTGG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATCATAATCTCTATAACGTAATCAGTCCTAATCCTCCCCATAAATAGCTTTAATTATTGAAAAAACTGCTTTCATTAGCATCTGAAAACCGCAAACCTGACTTCCTCTAAATTGAGCCTATTCATAGCAACAGCCGTGAAAAAAACACCACATCAGGACCAACAACAGAGAATAGAAGGATGGATAATGAAGCATCCATTGTTGTGTTCAGGCTGTCCGATTTAAGGGCTACGTCCGCTAATCTATCGCCTTACAATAACCATTGCGGCCGGGGGCGCGCACGCTCGCACGACGGCCCGACGACGGGACTAATGTAATGTTTCCAGGTGACCCGTCGCCCGCCCATCCGCCAATTTTCAGGCTCCGCCCCTCCCTTCTTCCTCTTTTTCTCTCACTGTTACCCGTCAATCTCTGCGCACGATAATGCTTGGGTTAGTTAGGTAGTTTGAGAGAAGAAGGGAGAATCGGAATCGGAGGCGGCGCCATCGTCGCCCATAACATATATCCGAAATTGCGGAGAACAATGAAATTTCGTGTGTGACGCTGGTGGGAAGAGGCCTTCTAGGCCATCTGAAGGCCGTTTCAGAGAGAGAGAGCGATATTTCGGAAGAACACAATTGCCTCCTGTAGATTACTGTACTTACCCTATTTGCGTGGTAATTATACAACCAGGTATCGAATTCAGGCTTGAGAAGACGGAGAAAGAAGGACGTTGGAGAAAAAAAATCCTCTCAAAGATACATAAAAAGTGACACGTTGAAAAAGGAGGAGATGAGATAATTCTAGTATGAGGGTGGACAAAGAAGGAAAATGAGAAAAAGAAGTATGTGACTACTTCATTATCCAACTACTACTACTTTTGCATCCTTCAATTTTCACAACTAACGGGAATAAATGGAGAAGAAATGAGGAATTGCTAAAATTGGTTTGGCAGAAGAGGGAGAAGAATAGGCATATAATTTTGACGGATTACTACAATGATGGATTGGAAATAGTG</canonical>
            <polymorphic>AAAATCATAATCTCTATAACGTAATCAGTCCTAATCCTCCCCATAAATAGCTTTAATTATTGAAAAAACTGCTTTCATTAGCATCTGAAAACCGCAAACCTGACTTCCTCTAAATTGAGCCTATTCATAGCAACAGCCGTGAAAAAAACACCACATCAGGACCAACAACAGAGAATAGAAGGATGGATAATGAAGCATCCATTGTTGTGTTCAGGCTGTCCGATTTAAGGGCTACGTCCGCTAATCTATCGCCTTACAATAACCATTGCGGCCGGGGGCGCGCACGCTCGCACGACGGCCCGACGACGGGACTAATGTAATGTTTCCAGGTGACCCGTCGCCCGCCCATCCGCCAATTTTCAGGCTCCGCCCCTCCCTTCTTCCTCTTTTTCTCTCACTGTTACCCGTCAATCTCTGCGCACGATAATGCTTGGGTTAGTTAGGTAGTTTGAGAGAAGAAGGGAGAATCGGAATCGGAGGCGGCGCCATCGTCGCCCATMACATATATCCGAAATTGCGGAGAACAATGAAATTTCGTGTGTGACGCTGGTGGGAAGAGGCCTTCTAGGCCATCTGAAGGCCGTTTCAGAGAGAGAGAGCGATATTTCGGAAGAACACAATTGCCTCCTGTAGATTACTGTACTTACCCTATTTGCGTGGTAATTATACAACCAGGTATCGAATTCAGGCTTGAGAAGACGGAGAAAGAAGGACGTTGGAGAAAAAAAATCCTCTCAAAGATACATAAAAAGTGACACGTTGAAAAAGGAGGAGATGAGATAATTCTAGTATGAGGGTGGACAAAGAAGGAAAATGAGAAAAAGAAGTATGTGACTACTTCATTATCCAACTACTACTACTTTTGCATCCTTCAATTTTCACAACTAACGGGAATAAATGGAGAAGAAATGAGGAATTGCTAAAATTGGTTTGGCAGAAGAGGGAGAAGAATAGGCATATAATTTTGACGGATTACTACAATGATGGATTGGAAATAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATAATGCTTGGGTTAGTTAGGT</pcr_primer_p1>
		<pcr_primer_p2>TGTATAATTACCACGCAAATAGG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATAATGCTTGGGTTAGTTAGGTAGTTTGAGAGAAGAAGGGAGAATCGGAATCGGAGGCGGCGCCATCGTCGCCCATAACATATATCCGAAATTGCGGAGAACAATGAAATTTCGTGTGTGACGCTGGTGGGAAGAGGCCTTCTAGGCCATCTGAAGGCCGTTTCAGAGAGAGAGAGCGATATTTCGGAAGAACACAATTGCCTCCTGTAGATTACTGTACTTACCCTATTTGCGTGGTAATTATACA</canonical_amplicon>
		<polymorphic_amplicon>GATAATGCTTGGGTTAGTTAGGTAGTTTGAGAGAAGAAGGGAGAATCGGAATCGGAGGCGGCGCCATCGTCGCCCATMACATATATCCGAAATTGCGGAGAACAATGAAATTTCGTGTGTGACGCTGGTGGGAAGAGGCCTTCTAGGCCATCTGAAGGCCGTTTCAGAGAGAGAGAGCGATATTTCGGAAGAACACAATTGCCTCCTGTAGATTACTGTACTTACCCTATTTGCGTGGTAATTATACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21278</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>449586</contig_pos>
        <strand>+</strand>
        <context>ACTGTACACT[A/C]GTAAGCCGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATCATCCTCAATTCCTACGTAAGACGACCTACTGTAGATACTGTACACT</left_flank>
        <right_flank>GTAAGCCGGATGAAGCCCCCTCCGAGGATAAGCAATTAATACTAATGATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAGGGAGAAGAATAGGCATATAATTTTGACGGATTACTACAATGATGGATTGGAAATAGTGTAAATTTTTAGGACTCTGACTTCTTTCTGACTACAATTCTGACATTATAATAATTTTCATAAGTTGTAGTTTGCAGATTTAGATTTTAGATTGAATTCTAGCAAAAAATAATTATATCCTACTGTATATAAATTTTGAACTATCAAACTATTTTTCAGTAATTGTAGTATTTTTCAGAATTATTCAGCGGAATTTTTTCCTACAGTAACCCAGTTTTGTCGGTGTCCCAGGCAATTCTAGAAGACCGGTAGCACCAATTAAGGCATTTGCGCAACACTCTCACCTCATCAACGTTCTCCTTTCTCAAAAATTCGCGCTAATTCCAGTGCAGATGGTACCATCACTCGCGCACATCTTGGAGAGGCATTGCATCATCCGACGCGTGGCATCATCCTCAATTCCTACGTAAGACGACCTACTGTAGATACTGTACACTAGTAAGCCGGATGAAGCCCCCTCCGAGGATAAGCAATTAATACTAATGATGATGTTGGCTAATGGGATTTTGATATGATTTCCCTGCTACATCTACCCGCTGTTTCTTCTTTTTCTTTATTTTCTCCGATTTGATTTCCTCGTTTACGGTAGATATTTATTACCCTCGCTAGCAATAAATGATAATTTTTTCTTGAATGATTTGGTGGAAGAAACATCTAGAATATGCTAATATTTTTTATGATCTTTATGACTCTGGCATCAAAAAACATCGATAAAAATGCTGAAAACAAAGTTTAGTGTATAATAAAAAAAACGTGTGCCAGGTTGTGAGTTTTGAGAAGAGTCGATTGAACAAATAAGAACACATAAACACCCTTTCCAAGGCCCTGTAGGGCGCGAATTGAAAAGGCTCGGTGCCCTGTTTGTTGTGGATACAGTATATTGACACGAGAGCTGTGAAGAAAAAGGAGGAAGACGAGGAAGAACAACGAGTACTTGT</canonical>
            <polymorphic>AAGAGGGAGAAGAATAGGCATATAATTTTGACGGATTACTACAATGATGGATTGGAAATAGTGTAAATTTTTAGGACTCTGACTTCTTTCTGACTACAATTCTGACATTATAATAATTTTCATAAGTTGTAGTTTGCAGATTTAGATTTTAGATTGAATTCTAGCAAAAAATAATTATATCCTACTGTATATAAATTTTGAACTATCAAACTATTTTTCAGTAATTGTAGTATTTTTCAGAATTATTCAGCGGAATTTTTTCCTACAGTAACCCAGTTTTGTCGGTGTCCCAGGCAATTCTAGAAGACCGGTAGCACCAATTAAGGCATTTGCGCAACACTCTCACCTCATCAACGTTCTCCTTTCTCAAAAATTCGCGCTAATTCCAGTGCAGATGGTACCATCACTCGCGCACATCTTGGAGAGGCATTGCATCATCCGACGCGTGGCATCATCCTCAATTCCTACGTAAGACGACCTACTGTAGATACTGTACACTMGTAAGCCGGATGAAGCCCCCTCCGAGGATAAGCAATTAATACTAATGATGATGTTGGCTAATGGGATTTTGATATGATTTCCCTGCTACATCTACCCGCTGTTTCTTCTTTTTCTTTATTTTCTCCGATTTGATTTCCTCGTTTACGGTAGATATTTATTACCCTCGCTAGCAATAAATGATAATTTTTTCTTGAATGATTTGGTGGAAGAAACATCTAGAATATGCTAATATTTTTTATGATCTTTATGACTCTGGCATCAAAAAACATCGATAAAAATGCTGAAAACAAAGTTTAGTGTATAATAAAAAAAACGTGTGCCAGGTTGTGAGTTTTGAGAAGAGTCGATTGAACAAATAAGAACACATAAACACCCTTTCCAAGGCCCTGTAGGGCGCGAATTGAAAAGGCTCGGTGCCCTGTTTGTTGTGGATACAGTATATTGACACGAGAGCTGTGAAGAAAAAGGAGGAAGACGAGGAAGAACAACGAGTACTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACTAGT</site>
                <isoschizomers>
                    <enzyme>AhlI</enzyme>
                    <enzyme>BcuI</enzyme>
                    <enzyme>SpeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>283 198 170 161 139 49</canonical_bands>
                <polymorphic_bands>368 283 161 139 49</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCATCAACGTTCTCCTTTCT</pcr_primer_p1>
		<pcr_primer_p2>GTAGATGTAGCAGGGAAATCATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCATCAACGTTCTCCTTTCTCAAAAATTCGCGCTAATTCCAGTGCAGATGGTACCATCACTCGCGCACATCTTGGAGAGGCATTGCATCATCCGACGCGTGGCATCATCCTCAATTCCTACGTAAGACGACCTACTGTAGATACTGTACACTAGTAAGCCGGATGAAGCCCCCTCCGAGGATAAGCAATTAATACTAATGATGATGTTGGCTAATGGGATTTTGATATGATTTCCCTGCTACATCTAC</canonical_amplicon>
		<polymorphic_amplicon>CTCATCAACGTTCTCCTTTCTCAAAAATTCGCGCTAATTCCAGTGCAGATGGTACCATCACTCGCGCACATCTTGGAGAGGCATTGCATCATCCGACGCGTGGCATCATCCTCAATTCCTACGTAAGACGACCTACTGTAGATACTGTACACTMGTAAGCCGGATGAAGCCCCCTCCGAGGATAAGCAATTAATACTAATGATGATGTTGGCTAATGGGATTTTGATATGATTTCCCTGCTACATCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21279</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>449236</contig_pos>
        <strand>+</strand>
        <context>ATTTAGATTT[C/T]AGATTGAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTGACATTATAATAATTTTCATAAGTTGTAGTTTGCAGATTTAGATTT</left_flank>
        <right_flank>AGATTGAATTCTAGCAAAAAATAATTATATCCTACTGTATATAAATTTTG</right_flank>
        <qual_score>149</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGAGAGAGAGCGATATTTCGGAAGAACACAATTGCCTCCTGTAGATTACTGTACTTACCCTATTTGCGTGGTAATTATACAACCAGGTATCGAATTCAGGCTTGAGAAGACGGAGAAAGAAGGACGTTGGAGAAAAAAAATCCTCTCAAAGATACATAAAAAGTGACACGTTGAAAAAGGAGGAGATGAGATAATTCTAGTATGAGGGTGGACAAAGAAGGAAAATGAGAAAAAGAAGTATGTGACTACTTCATTATCCAACTACTACTACTTTTGCATCCTTCAATTTTCACAACTAACGGGAATAAATGGAGAAGAAATGAGGAATTGCTAAAATTGGTTTGGCAGAAGAGGGAGAAGAATAGGCATATAATTTTGACGGATTACTACAATGATGGATTGGAAATAGTGTAAATTTTTAGGACTCTGACTTCTTTCTGACTACAATTCTGACATTATAATAATTTTCATAAGTTGTAGTTTGCAGATTTAGATTTTAGATTGAATTCTAGCAAAAAATAATTATATCCTACTGTATATAAATTTTGAACTATCAAACTATTTTTCAGTAATTGTAGTATTTTTCAGAATTATTCAGCGGAATTTTTTCCTACAGTAACCCAGTTTTGTCGGTGTCCCAGGCAATTCTAGAAGACCGGTAGCACCAATTAAGGCATTTGCGCAACACTCTCACCTCATCAACGTTCTCCTTTCTCAAAAATTCGCGCTAATTCCAGTGCAGATGGTACCATCACTCGCGCACATCTTGGAGAGGCATTGCATCATCCGACGCGTGGCATCATCCTCAATTCCTACGTAAGACGACCTACTGTAGATACTGTACACTAGTAAGCCGGATGAAGCCCCCTCCGAGGATAAGCAATTAATACTAATGATGATGTTGGCTAATGGGATTTTGATATGATTTCCCTGCTACATCTACCCGCTGTTTCTTCTTTTTCTTTATTTTCTCCGATTTGATTTCCTCGTTTACGGTA</canonical>
            <polymorphic>AGAGAGAGAGAGCGATATTTCGGAAGAACACAATTGCCTCCTGTAGATTACTGTACTTACCCTATTTGCGTGGTAATTATACAACCAGGTATCGAATTCAGGCTTGAGAAGACGGAGAAAGAAGGACGTTGGAGAAAAAAAATCCTCTCAAAGATACATAAAAAGTGACACGTTGAAAAAGGAGGAGATGAGATAATTCTAGTATGAGGGTGGACAAAGAAGGAAAATGAGAAAAAGAAGTATGTGACTACTTCATTATCCAACTACTACTACTTTTGCATCCTTCAATTTTCACAACTAACGGGAATAAATGGAGAAGAAATGAGGAATTGCTAAAATTGGTTTGGCAGAAGAGGGAGAAGAATAGGCATATAATTTTGACGGATTACTACAATGATGGATTGGAAATAGTGTAAATTTTTAGGACTCTGACTTCTTTCTGACTACAATTCTGACATTATAATAATTTTCATAAGTTGTAGTTTGCAGATTTAGATTTYAGATTGAATTCTAGCAAAAAATAATTATATCCTACTGTATATAAATTTTGAACTATCAAACTATTTTTCAGTAATTGTAGTATTTTTCAGAATTATTCAGCGGAATTTTTTCCTACAGTAACCCAGTTTTGTCGGTGTCCCAGGCAATTCTAGAAGACCGGTAGCACCAATTAAGGCATTTGCGCAACACTCTCACCTCATCAACGTTCTCCTTTCTCAAAAATTCGCGCTAATTCCAGTGCAGATGGTACCATCACTCGCGCACATCTTGGAGAGGCATTGCATCATCCGACGCGTGGCATCATCCTCAATTCCTACGTAAGACGACCTACTGTAGATACTGTACACTAGTAAGCCGGATGAAGCCCCCTCCGAGGATAAGCAATTAATACTAATGATGATGTTGGCTAATGGGATTTTGATATGATTTCCCTGCTACATCTACCCGCTGTTTCTTCTTTTTCTTTATTTTCTCCGATTTGATTTCCTCGTTTACGGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTACAATGATGGATTGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>GACAAAACTGGGTTACTGTAGG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TACTACAATGATGGATTGGAAATAGTGTAAATTTTTAGGACTCTGACTTCTTTCTGACTACAATTCTGACATTATAATAATTTTCATAAGTTGTAGTTTGCAGATTTAGATTTTAGATTGAATTCTAGCAAAAAATAATTATATCCTACTGTATATAAATTTTGAACTATCAAACTATTTTTCAGTAATTGTAGTATTTTTCAGAATTATTCAGCGGAATTTTTTCCTACAGTAACCCAGTTTTGTC</canonical_amplicon>
		<polymorphic_amplicon>TACTACAATGATGGATTGGAAATAGTGTAAATTTTTAGGACTCTGACTTCTTTCTGACTACAATTCTGACATTATAATAATTTTCATAAGTTGTAGTTTGCAGATTTAGATTTYAGATTGAATTCTAGCAAAAAATAATTATATCCTACTGTATATAAATTTTGAACTATCAAACTATTTTTCAGTAATTGTAGTATTTTTCAGAATTATTCAGCGGAATTTTTTCCTACAGTAACCCAGTTTTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21281</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>451906</contig_pos>
        <strand>+</strand>
        <context>TGGCGGCAGG[A/G]GGCACCTGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCACGATTGATTCATTTTTTGATGATTATTTTCCTCTTTTGGCGGCAGG</left_flank>
        <right_flank>GGCACCTGTGACGCACATTTAATGGAGAGGAACGCCGCGAATTCAGACCC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTATTTGGTAATTGCTGCTTGGCTACAGTACCCCTTAAAAACTTTAACTGAAAATTTCAAAATCCCAAATCTTTCAATTCAGCTAACTTGATTGTCAATACCTATTTCCATTGTTTATCCTTGCTAATGAGTTTTTTTTTCTTGTCTCACCCAGAACATTTTCAAACAAAAAATAGGATTGAACGAAAAGGACGACTGCTTGTTTTATGAATCATTCCCCCCCCCCTTTCTAGCCTGAAATAGGTGATAAGTGCGGGAAACAAAACCATAAACGGATAGTATTGAGAGGCAAACTAGCGGCTAGTAAAAAGACAATGAGTCACCCCGGGAAATACCTTATTCCCTTTTTTCCCATTTCTATAGCCTCCCCTATAAGGAAGACGGAAATGAGAAAAAAAGAGAACGTTCTGTGAGAAAATCCAATAGTTTCTTATGAATATATGAATCGCACGATTGATTCATTTTTTGATGATTATTTTCCTCTTTTGGCGGCAGGAGGCACCTGTGACGCACATTTAATGGAGAGGAACGCCGCGAATTCAGACCCTGCTGGTCAAAAATCGAGGACTCATCTTGGAGAAGAGAGACAAAGGAAGAGGAAGAGTTATTGGTCTGGAAAGAACCAAGATATAACGTCTTGGCTTTATGGGTTTTTCGAAGGCAAAAAACCGGAGAAAACGAGGAAGAAAAGACTGAGAAAACTGAGAAAAAAGGATTCACAATTTTCATCGTCTTCCCTTTTTTCACATTTCTCTCTTTCTTTTTCGCCTTTCAAGTCATCCAGCTTTGCCAATTTCGCTTCTAATTTTTTATGGGTATTTTTAAGCATAAAATAAGGGAGAATGGTGGACATATGTCCAATGGATCATCCCTAGTTTTCATACTACTTCACTATGAAAAAACAAACGAAAAACCTGATTTTTTTTTCGCTGACTTTGAAATTGAAGTCAATAAAAAACTACATTACCGGGGTTCTGTTCTCGTTCTCTGTGTTTCC</canonical>
            <polymorphic>CAATTATTTGGTAATTGCTGCTTGGCTACAGTACCCCTTAAAAACTTTAACTGAAAATTTCAAAATCCCAAATCTTTCAATTCAGCTAACTTGATTGTCAATACCTATTTCCATTGTTTATCCTTGCTAATGAGTTTTTTTTTCTTGTCTCACCCAGAACATTTTCAAACAAAAAATAGGATTGAACGAAAAGGACGACTGCTTGTTTTATGAATCATTCCCCCCCCCCTTTCTAGCCTGAAATAGGTGATAAGTGCGGGAAACAAAACCATAAACGGATAGTATTGAGAGGCAAACTAGCGGCTAGTAAAAAGACAATGAGTCACCCCGGGAAATACCTTATTCCCTTTTTTCCCATTTCTATAGCCTCCCCTATAAGGAAGACGGAAATGAGAAAAAAAGAGAACGTTCTGTGAGAAAATCCAATAGTTTCTTATGAATATATGAATCGCACGATTGATTCATTTTTTGATGATTATTTTCCTCTTTTGGCGGCAGGRGGCACCTGTGACGCACATTTAATGGAGAGGAACGCCGCGAATTCAGACCCTGCTGGTCAAAAATCGAGGACTCATCTTGGAGAAGAGAGACAAAGGAAGAGGAAGAGTTATTGGTCTGGAAAGAACCAAGATATAACGTCTTGGCTTTATGGGTTTTTCGAAGGCAAAAAACCGGAGAAAACGAGGAAGAAAAGACTGAGAAAACTGAGAAAAAAGGATTCACAATTTTCATCGTCTTCCCTTTTTTCACATTTCTCTCTTTCTTTTTCGCCTTTCAAGTCATCCAGCTTTGCCAATTTCGCTTCTAATTTTTTATGGGTATTTTTAAGCATAAAATAAGGGAGAATGGTGGACATATGTCCAATGGATCATCCCTAGTTTTCATACTACTTCACTATGAAAAAACAAACGAAAAACCTGATTTTTTTTTCGCTGACTTTGAAATTGAAGTCAATAAAAAACTACATTACCGGGGTTCTGTTCTCGTTCTCTGTGTTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTCTATAGCCTCCCCTATAA</pcr_primer_p1>
		<pcr_primer_p2>CTTCCTCTTCCTTTGTCTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTTCTATAGCCTCCCCTATAAGGAAGACGGAAATGAGAAAAAAAGAGAACGTTCTGTGAGAAAATCCAATAGTTTCTTATGAATATATGAATCGCACGATTGATTCATTTTTTGATGATTATTTTCCTCTTTTGGCGGCAGGAGGCACCTGTGACGCACATTTAATGGAGAGGAACGCCGCGAATTCAGACCCTGCTGGTCAAAAATCGAGGACTCATCTTGGAGAAGAGAGACAAAGGAAGAGGAAG</canonical_amplicon>
		<polymorphic_amplicon>CATTTCTATAGCCTCCCCTATAAGGAAGACGGAAATGAGAAAAAAAGAGAACGTTCTGTGAGAAAATCCAATAGTTTCTTATGAATATATGAATCGCACGATTGATTCATTTTTTGATGATTATTTTCCTCTTTTGGCGGCAGGRGGCACCTGTGACGCACATTTAATGGAGAGGAACGCCGCGAATTCAGACCCTGCTGGTCAAAAATCGAGGACTCATCTTGGAGAAGAGAGACAAAGGAAGAGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21282</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>451882</contig_pos>
        <strand>+</strand>
        <context>TTTTTGATGA[C/T]TATTTTCCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAGTTTCTTATGAATATATGAATCGCACGATTGATTCATTTTTTGATGA</left_flank>
        <right_flank>TATTTTCCTCTTTTGGCGGCAGGAGGCACCTGTGACGCACATTTAATGGA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCCCCTAACTGTGTATTCAAAACAATTATTTGGTAATTGCTGCTTGGCTACAGTACCCCTTAAAAACTTTAACTGAAAATTTCAAAATCCCAAATCTTTCAATTCAGCTAACTTGATTGTCAATACCTATTTCCATTGTTTATCCTTGCTAATGAGTTTTTTTTTCTTGTCTCACCCAGAACATTTTCAAACAAAAAATAGGATTGAACGAAAAGGACGACTGCTTGTTTTATGAATCATTCCCCCCCCCCTTTCTAGCCTGAAATAGGTGATAAGTGCGGGAAACAAAACCATAAACGGATAGTATTGAGAGGCAAACTAGCGGCTAGTAAAAAGACAATGAGTCACCCCGGGAAATACCTTATTCCCTTTTTTCCCATTTCTATAGCCTCCCCTATAAGGAAGACGGAAATGAGAAAAAAAGAGAACGTTCTGTGAGAAAATCCAATAGTTTCTTATGAATATATGAATCGCACGATTGATTCATTTTTTGATGATTATTTTCCTCTTTTGGCGGCAGGAGGCACCTGTGACGCACATTTAATGGAGAGGAACGCCGCGAATTCAGACCCTGCTGGTCAAAAATCGAGGACTCATCTTGGAGAAGAGAGACAAAGGAAGAGGAAGAGTTATTGGTCTGGAAAGAACCAAGATATAACGTCTTGGCTTTATGGGTTTTTCGAAGGCAAAAAACCGGAGAAAACGAGGAAGAAAAGACTGAGAAAACTGAGAAAAAAGGATTCACAATTTTCATCGTCTTCCCTTTTTTCACATTTCTCTCTTTCTTTTTCGCCTTTCAAGTCATCCAGCTTTGCCAATTTCGCTTCTAATTTTTTATGGGTATTTTTAAGCATAAAATAAGGGAGAATGGTGGACATATGTCCAATGGATCATCCCTAGTTTTCATACTACTTCACTATGAAAAAACAAACGAAAAACCTGATTTTTTTTTCGCTGACTTTGAAATTGAAGTCAATAAAAAACTACATTACCGGGGT</canonical>
            <polymorphic>ATCCCCCTAACTGTGTATTCAAAACAATTATTTGGTAATTGCTGCTTGGCTACAGTACCCCTTAAAAACTTTAACTGAAAATTTCAAAATCCCAAATCTTTCAATTCAGCTAACTTGATTGTCAATACCTATTTCCATTGTTTATCCTTGCTAATGAGTTTTTTTTTCTTGTCTCACCCAGAACATTTTCAAACAAAAAATAGGATTGAACGAAAAGGACGACTGCTTGTTTTATGAATCATTCCCCCCCCCCTTTCTAGCCTGAAATAGGTGATAAGTGCGGGAAACAAAACCATAAACGGATAGTATTGAGAGGCAAACTAGCGGCTAGTAAAAAGACAATGAGTCACCCCGGGAAATACCTTATTCCCTTTTTTCCCATTTCTATAGCCTCCCCTATAAGGAAGACGGAAATGAGAAAAAAAGAGAACGTTCTGTGAGAAAATCCAATAGTTTCTTATGAATATATGAATCGCACGATTGATTCATTTTTTGATGAYTATTTTCCTCTTTTGGCGGCAGGAGGCACCTGTGACGCACATTTAATGGAGAGGAACGCCGCGAATTCAGACCCTGCTGGTCAAAAATCGAGGACTCATCTTGGAGAAGAGAGACAAAGGAAGAGGAAGAGTTATTGGTCTGGAAAGAACCAAGATATAACGTCTTGGCTTTATGGGTTTTTCGAAGGCAAAAAACCGGAGAAAACGAGGAAGAAAAGACTGAGAAAACTGAGAAAAAAGGATTCACAATTTTCATCGTCTTCCCTTTTTTCACATTTCTCTCTTTCTTTTTCGCCTTTCAAGTCATCCAGCTTTGCCAATTTCGCTTCTAATTTTTTATGGGTATTTTTAAGCATAAAATAAGGGAGAATGGTGGACATATGTCCAATGGATCATCCCTAGTTTTCATACTACTTCACTATGAAAAAACAAACGAAAAACCTGATTTTTTTTTCGCTGACTTTGAAATTGAAGTCAATAAAAAACTACATTACCGGGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTCTATAGCCTCCCCTATAA</pcr_primer_p1>
		<pcr_primer_p2>CTTCCTCTTCCTTTGTCTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTTCTATAGCCTCCCCTATAAGGAAGACGGAAATGAGAAAAAAAGAGAACGTTCTGTGAGAAAATCCAATAGTTTCTTATGAATATATGAATCGCACGATTGATTCATTTTTTGATGATTATTTTCCTCTTTTGGCGGCAGGAGGCACCTGTGACGCACATTTAATGGAGAGGAACGCCGCGAATTCAGACCCTGCTGGTCAAAAATCGAGGACTCATCTTGGAGAAGAGAGACAAAGGAAGAGGAAG</canonical_amplicon>
		<polymorphic_amplicon>CATTTCTATAGCCTCCCCTATAAGGAAGACGGAAATGAGAAAAAAAGAGAACGTTCTGTGAGAAAATCCAATAGTTTCTTATGAATATATGAATCGCACGATTGATTCATTTTTTGATGAYTATTTTCCTCTTTTGGCGGCAGGAGGCACCTGTGACGCACATTTAATGGAGAGGAACGCCGCGAATTCAGACCCTGCTGGTCAAAAATCGAGGACTCATCTTGGAGAAGAGAGACAAAGGAAGAGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21283</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>506365</contig_pos>
        <strand>+</strand>
        <context>TACGGTGTTT[C/T]TCGTGTGGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCTTCCGGGCAGTTTTCTATTCACCAATGTTCAAATGGTACGGTGTTT</left_flank>
        <right_flank>TCGTGTGGTTTCTTCCTCGGCACTTCCATAATAAATTGAATTCCATTTAT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGGCGTAATAATATTAGTTTTAATGAGGCTTCAAGGGATTCTAGGCTTCAAGGATCTTATTAAGTTTGGAAGGGCTTCATTACATAGTATCACATTTATTCAAATGATTCAAAGTTCCTATTTGAAGAATCTGAGATTCATTAATAATTTTGTTATTGCGCAGACAGCTAAAATACCAGAATTTCGTTTTTTCAACTGCTTAAAACAAAATGTGGACTTCCTATTTTCTGGGCTGGCTTATTCTTTTCCTCTCTCCAAGGGGACAGTCTGTCTAGTCCGTAAGACGGCTCGAGAAACTTTTTTTCGCCTCAAAAGTGTGCCAAACATTTCTACAAACACCCAGGCTCCTCAATAAACACAAAAGTCGGTATACTTTGGAGGGTAGTGTGTGGTAAGATGCATTTCGAGGGTGCCTCTCAAAATAAACAGAAATTGAAACTTTTTTGGTTTCTTCCGGGCAGTTTTCTATTCACCAATGTTCAAATGGTACGGTGTTTCTCGTGTGGTTTCTTCCTCGGCACTTCCATAATAAATTGAATTCCATTTATTCCATTTAACTAGACTGCATTACAAGTGACAGCATTGTTGCGGCGAGTCGATTGTCTAACGATTGATGATACCTGAGGAGAAATTAAGACGTGGTGCAGATGGGAGTGCTTTGATAAATGAGAATCGGCGCAAATTCAAAGAGCACGAGGAGGACACAATGGAGAAAGTAATGGATCACATGGGTTGGCGGACAGAAAGAAAAAATTAGGAGATGAAAAAACAGTTTTGTAGTTGAAGGAGGTTGAATATCCTCAAATGAGTTTGGAGTTCGAAATTGGGGAATGTTCCAAAAAACAACATTGTTACGGCTTTATTAATAAGATACCGTATTTCTTTCAATATAAGCTATGCAAACCATTAACTTGAGCTTAATTATCTGGATTCCAGTAAGAGATATGAGAAATTTGTCAACTGATAAAAAATTGGTGATAATATGATGAATAATTTAT</canonical>
            <polymorphic>TTAGGCGTAATAATATTAGTTTTAATGAGGCTTCAAGGGATTCTAGGCTTCAAGGATCTTATTAAGTTTGGAAGGGCTTCATTACATAGTATCACATTTATTCAAATGATTCAAAGTTCCTATTTGAAGAATCTGAGATTCATTAATAATTTTGTTATTGCGCAGACAGCTAAAATACCAGAATTTCGTTTTTTCAACTGCTTAAAACAAAATGTGGACTTCCTATTTTCTGGGCTGGCTTATTCTTTTCCTCTCTCCAAGGGGACAGTCTGTCTAGTCCGTAAGACGGCTCGAGAAACTTTTTTTCGCCTCAAAAGTGTGCCAAACATTTCTACAAACACCCAGGCTCCTCAATAAACACAAAAGTCGGTATACTTTGGAGGGTAGTGTGTGGTAAGATGCATTTCGAGGGTGCCTCTCAAAATAAACAGAAATTGAAACTTTTTTGGTTTCTTCCGGGCAGTTTTCTATTCACCAATGTTCAAATGGTACGGTGTTTYTCGTGTGGTTTCTTCCTCGGCACTTCCATAATAAATTGAATTCCATTTATTCCATTTAACTAGACTGCATTACAAGTGACAGCATTGTTGCGGCGAGTCGATTGTCTAACGATTGATGATACCTGAGGAGAAATTAAGACGTGGTGCAGATGGGAGTGCTTTGATAAATGAGAATCGGCGCAAATTCAAAGAGCACGAGGAGGACACAATGGAGAAAGTAATGGATCACATGGGTTGGCGGACAGAAAGAAAAAATTAGGAGATGAAAAAACAGTTTTGTAGTTGAAGGAGGTTGAATATCCTCAAATGAGTTTGGAGTTCGAAATTGGGGAATGTTCCAAAAAACAACATTGTTACGGCTTTATTAATAAGATACCGTATTTCTTTCAATATAAGCTATGCAAACCATTAACTTGAGCTTAATTATCTGGATTCCAGTAAGAGATATGAGAAATTTGTCAACTGATAAAAAATTGGTGATAATATGATGAATAATTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATACTTTGGAGGGTAGTGTGTG</pcr_primer_p1>
		<pcr_primer_p2>AGGTATCATCAATCGTTAGACAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TATACTTTGGAGGGTAGTGTGTGGTAAGATGCATTTCGAGGGTGCCTCTCAAAATAAACAGAAATTGAAACTTTTTTGGTTTCTTCCGGGCAGTTTTCTATTCACCAATGTTCAAATGGTACGGTGTTTCTCGTGTGGTTTCTTCCTCGGCACTTCCATAATAAATTGAATTCCATTTATTCCATTTAACTAGACTGCATTACAAGTGACAGCATTGTTGCGGCGAGTCGATTGTCTAACGATTGATGATACCT</canonical_amplicon>
		<polymorphic_amplicon>TATACTTTGGAGGGTAGTGTGTGGTAAGATGCATTTCGAGGGTGCCTCTCAAAATAAACAGAAATTGAAACTTTTTTGGTTTCTTCCGGGCAGTTTTCTATTCACCAATGTTCAAATGGTACGGTGTTTYTCGTGTGGTTTCTTCCTCGGCACTTCCATAATAAATTGAATTCCATTTATTCCATTTAACTAGACTGCATTACAAGTGACAGCATTGTTGCGGCGAGTCGATTGTCTAACGATTGATGATACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21284</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>506462</contig_pos>
        <strand>+</strand>
        <context>GTTGCGGCGA[A/G]TCGATTGTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATTCCATTTAACTAGACTGCATTACAAGTGACAGCATTGTTGCGGCGA</left_flank>
        <right_flank>TCGATTGTCTAACGATTGATGATACCTGAGGAGAAATTAAGACGTGGTGC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATTCAAATGATTCAAAGTTCCTATTTGAAGAATCTGAGATTCATTAATAATTTTGTTATTGCGCAGACAGCTAAAATACCAGAATTTCGTTTTTTCAACTGCTTAAAACAAAATGTGGACTTCCTATTTTCTGGGCTGGCTTATTCTTTTCCTCTCTCCAAGGGGACAGTCTGTCTAGTCCGTAAGACGGCTCGAGAAACTTTTTTTCGCCTCAAAAGTGTGCCAAACATTTCTACAAACACCCAGGCTCCTCAATAAACACAAAAGTCGGTATACTTTGGAGGGTAGTGTGTGGTAAGATGCATTTCGAGGGTGCCTCTCAAAATAAACAGAAATTGAAACTTTTTTGGTTTCTTCCGGGCAGTTTTCTATTCACCAATGTTCAAATGGTACGGTGTTTCTCGTGTGGTTTCTTCCTCGGCACTTCCATAATAAATTGAATTCCATTTATTCCATTTAACTAGACTGCATTACAAGTGACAGCATTGTTGCGGCGAGTCGATTGTCTAACGATTGATGATACCTGAGGAGAAATTAAGACGTGGTGCAGATGGGAGTGCTTTGATAAATGAGAATCGGCGCAAATTCAAAGAGCACGAGGAGGACACAATGGAGAAAGTAATGGATCACATGGGTTGGCGGACAGAAAGAAAAAATTAGGAGATGAAAAAACAGTTTTGTAGTTGAAGGAGGTTGAATATCCTCAAATGAGTTTGGAGTTCGAAATTGGGGAATGTTCCAAAAAACAACATTGTTACGGCTTTATTAATAAGATACCGTATTTCTTTCAATATAAGCTATGCAAACCATTAACTTGAGCTTAATTATCTGGATTCCAGTAAGAGATATGAGAAATTTGTCAACTGATAAAAAATTGGTGATAATATGATGAATAATTTATCAGTTAACAATTTTTCATATCTTTCACATGAATCGAGATAAATGGGCTCAAAGTTGATTACTTGAGTGGGCTTCTGTTCAAGGAAACACTGGTAATA</canonical>
            <polymorphic>TTATTCAAATGATTCAAAGTTCCTATTTGAAGAATCTGAGATTCATTAATAATTTTGTTATTGCGCAGACAGCTAAAATACCAGAATTTCGTTTTTTCAACTGCTTAAAACAAAATGTGGACTTCCTATTTTCTGGGCTGGCTTATTCTTTTCCTCTCTCCAAGGGGACAGTCTGTCTAGTCCGTAAGACGGCTCGAGAAACTTTTTTTCGCCTCAAAAGTGTGCCAAACATTTCTACAAACACCCAGGCTCCTCAATAAACACAAAAGTCGGTATACTTTGGAGGGTAGTGTGTGGTAAGATGCATTTCGAGGGTGCCTCTCAAAATAAACAGAAATTGAAACTTTTTTGGTTTCTTCCGGGCAGTTTTCTATTCACCAATGTTCAAATGGTACGGTGTTTCTCGTGTGGTTTCTTCCTCGGCACTTCCATAATAAATTGAATTCCATTTATTCCATTTAACTAGACTGCATTACAAGTGACAGCATTGTTGCGGCGARTCGATTGTCTAACGATTGATGATACCTGAGGAGAAATTAAGACGTGGTGCAGATGGGAGTGCTTTGATAAATGAGAATCGGCGCAAATTCAAAGAGCACGAGGAGGACACAATGGAGAAAGTAATGGATCACATGGGTTGGCGGACAGAAAGAAAAAATTAGGAGATGAAAAAACAGTTTTGTAGTTGAAGGAGGTTGAATATCCTCAAATGAGTTTGGAGTTCGAAATTGGGGAATGTTCCAAAAAACAACATTGTTACGGCTTTATTAATAAGATACCGTATTTCTTTCAATATAAGCTATGCAAACCATTAACTTGAGCTTAATTATCTGGATTCCAGTAAGAGATATGAGAAATTTGTCAACTGATAAAAAATTGGTGATAATATGATGAATAATTTATCAGTTAACAATTTTTCATATCTTTCACATGAATCGAGATAAATGGGCTCAAAGTTGATTACTTGAGTGGGCTTCTGTTCAAGGAAACACTGGTAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTTCAAATGGTACGGTGT</pcr_primer_p1>
		<pcr_primer_p2>GATCCATTACTTTCTCCATTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGTTCAAATGGTACGGTGTTTCTCGTGTGGTTTCTTCCTCGGCACTTCCATAATAAATTGAATTCCATTTATTCCATTTAACTAGACTGCATTACAAGTGACAGCATTGTTGCGGCGAGTCGATTGTCTAACGATTGATGATACCTGAGGAGAAATTAAGACGTGGTGCAGATGGGAGTGCTTTGATAAATGAGAATCGGCGCAAATTCAAAGAGCACGAGGAGGACACAATGGAGAAAGTAATGGATC</canonical_amplicon>
		<polymorphic_amplicon>ATGTTCAAATGGTACGGTGTTTCTCGTGTGGTTTCTTCCTCGGCACTTCCATAATAAATTGAATTCCATTTATTCCATTTAACTAGACTGCATTACAAGTGACAGCATTGTTGCGGCGARTCGATTGTCTAACGATTGATGATACCTGAGGAGAAATTAAGACGTGGTGCAGATGGGAGTGCTTTGATAAATGAGAATCGGCGCAAATTCAAAGAGCACGAGGAGGACACAATGGAGAAAGTAATGGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21285</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>510196</contig_pos>
        <strand>+</strand>
        <context>CTTCAGAAAA[C/T]TCGAAAAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAA</left_flank>
        <right_flank>TCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAATTAGGAGCGGTTGTGAAAATGTGGAAATTGGCGCAACCAACTATAAGACGGGTTTTTATTGTTGTCAAAACGTTGTGTGTGGGGAGGAGAAGGGCCCCTGGTGCGGGTGTGCGTACACGACAAGCCGGTTATTGAGAAAATGCGAACGAATCGAGGACCGGTTTTCGGAATAGTTGCGTCTTTTCGCTCTCCCCGTCCGCATGAATCTCTTCAACAGTCTCTCTACCTCTCTCTCTCTCCCTGTCGCTGCGAACCGTGTTGCTGTTTGCCGCCTCTGGGTCTCATTTGCCTGTAATTCAGTTTTCTCCCAAATTTTTTTCTCACCATCACTTTCACCATCAGTTCTATTTTTACCTCAGGTGTTCGAAATTGAGTATTTCTTTTGGGAACTTTTAGATTTTTCAGTTTTTTTCTGACTATGTTCTAATCATTC</canonical>
            <polymorphic>CCATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAAYTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAATTAGGAGCGGTTGTGAAAATGTGGAAATTGGCGCAACCAACTATAAGACGGGTTTTTATTGTTGTCAAAACGTTGTGTGTGGGGAGGAGAAGGGCCCCTGGTGCGGGTGTGCGTACACGACAAGCCGGTTATTGAGAAAATGCGAACGAATCGAGGACCGGTTTTCGGAATAGTTGCGTCTTTTCGCTCTCCCCGTCCGCATGAATCTCTTCAACAGTCTCTCTACCTCTCTCTCTCTCCCTGTCGCTGCGAACCGTGTTGCTGTTTGCCGCCTCTGGGTCTCATTTGCCTGTAATTCAGTTTTCTCCCAAATTTTTTTCTCACCATCACTTTCACCATCAGTTCTATTTTTACCTCAGGTGTTCGAAATTGAGTATTTCTTTTGGGAACTTTTAGATTTTTCAGTTTTTTTCTGACTATGTTCTAATCATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>345 163 158 126 123 40 35 10</canonical_bands>
                <polymorphic_bands>345 198 158 126 123 40 10</polymorphic_bands>
            </assay>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>430 426 75 69</canonical_bands>
                <polymorphic_bands>505 426 69</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>268 158 126 103 66 57 46 40 35 27 17 17 16 14 10</canonical_bands>
                <polymorphic_bands>268 158 138 126 66 57 46 40 27 17 17 16 14 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAAAACTAATTTTGCACT</pcr_primer_p1>
		<pcr_primer_p2>ACAACCGCTCCTAATTTACTATAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAATTAGGAGCGGTTGT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAAYTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAATTAGGAGCGGTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21286</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>510182</contig_pos>
        <strand>+</strand>
        <context>ATCAAAAAAG[A/G]AGGCTTCAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAG</left_flank>
        <right_flank>AGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTACAGTCTCCATCCATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAATTAGGAGCGGTTGTGAAAATGTGGAAATTGGCGCAACCAACTATAAGACGGGTTTTTATTGTTGTCAAAACGTTGTGTGTGGGGAGGAGAAGGGCCCCTGGTGCGGGTGTGCGTACACGACAAGCCGGTTATTGAGAAAATGCGAACGAATCGAGGACCGGTTTTCGGAATAGTTGCGTCTTTTCGCTCTCCCCGTCCGCATGAATCTCTTCAACAGTCTCTCTACCTCTCTCTCTCTCCCTGTCGCTGCGAACCGTGTTGCTGTTTGCCGCCTCTGGGTCTCATTTGCCTGTAATTCAGTTTTCTCCCAAATTTTTTTCTCACCATCACTTTCACCATCAGTTCTATTTTTACCTCAGGTGTTCGAAATTGAGTATTTCTTTTGGGAACTTTTAGATTTTTCAGTTTTTTTCTGACTA</canonical>
            <polymorphic>TTTACAGTCTCCATCCATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGRAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAATTAGGAGCGGTTGTGAAAATGTGGAAATTGGCGCAACCAACTATAAGACGGGTTTTTATTGTTGTCAAAACGTTGTGTGTGGGGAGGAGAAGGGCCCCTGGTGCGGGTGTGCGTACACGACAAGCCGGTTATTGAGAAAATGCGAACGAATCGAGGACCGGTTTTCGGAATAGTTGCGTCTTTTCGCTCTCCCCGTCCGCATGAATCTCTTCAACAGTCTCTCTACCTCTCTCTCTCTCCCTGTCGCTGCGAACCGTGTTGCTGTTTGCCGCCTCTGGGTCTCATTTGCCTGTAATTCAGTTTTCTCCCAAATTTTTTTCTCACCATCACTTTCACCATCAGTTCTATTTTTACCTCAGGTGTTCGAAATTGAGTATTTCTTTTGGGAACTTTTAGATTTTTCAGTTTTTTTCTGACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAAAACTAATTTTGCACT</pcr_primer_p1>
		<pcr_primer_p2>ACAACCGCTCCTAATTTACTATAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAATTAGGAGCGGTTGT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGRAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAATTAGGAGCGGTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21287</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>510161</contig_pos>
        <strand>+</strand>
        <context>TGCAAATGCT[C/T]TTGCTCTTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCT</left_flank>
        <right_flank>TTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCGTTTTTTTTCACATTTCTTTACAGTCTCCATCCATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAATTAGGAGCGGTTGTGAAAATGTGGAAATTGGCGCAACCAACTATAAGACGGGTTTTTATTGTTGTCAAAACGTTGTGTGTGGGGAGGAGAAGGGCCCCTGGTGCGGGTGTGCGTACACGACAAGCCGGTTATTGAGAAAATGCGAACGAATCGAGGACCGGTTTTCGGAATAGTTGCGTCTTTTCGCTCTCCCCGTCCGCATGAATCTCTTCAACAGTCTCTCTACCTCTCTCTCTCTCCCTGTCGCTGCGAACCGTGTTGCTGTTTGCCGCCTCTGGGTCTCATTTGCCTGTAATTCAGTTTTCTCCCAAATTTTTTTCTCACCATCACTTTCACCATCAGTTCTATTTTTACCTCAGGTGTTCGAAATTGAGTATTTCTTTTGGGAACTTTTAGAT</canonical>
            <polymorphic>TTCCGTTTTTTTTCACATTTCTTTACAGTCTCCATCCATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTYTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAATTAGGAGCGGTTGTGAAAATGTGGAAATTGGCGCAACCAACTATAAGACGGGTTTTTATTGTTGTCAAAACGTTGTGTGTGGGGAGGAGAAGGGCCCCTGGTGCGGGTGTGCGTACACGACAAGCCGGTTATTGAGAAAATGCGAACGAATCGAGGACCGGTTTTCGGAATAGTTGCGTCTTTTCGCTCTCCCCGTCCGCATGAATCTCTTCAACAGTCTCTCTACCTCTCTCTCTCTCCCTGTCGCTGCGAACCGTGTTGCTGTTTGCCGCCTCTGGGTCTCATTTGCCTGTAATTCAGTTTTCTCCCAAATTTTTTTCTCACCATCACTTTCACCATCAGTTCTATTTTTACCTCAGGTGTTCGAAATTGAGTATTTCTTTTGGGAACTTTTAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGATTTATGTAAGGCTTGATTT</pcr_primer_p1>
		<pcr_primer_p2>AGTCGAAATAGTGGTCTTCCTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACT</canonical_amplicon>
		<polymorphic_amplicon>CAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTYTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21288</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>510106</contig_pos>
        <strand>+</strand>
        <context>ATTTATAGCT[C/T]AAGAGTGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCT</left_flank>
        <right_flank>AAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTCTTTGGTTACACTCATCATAAGACTACTGCCAACCTCCATCCTGTCTGCATTTCCGTTTTTTTTCACATTTCTTTACAGTCTCCATCCATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAATTAGGAGCGGTTGTGAAAATGTGGAAATTGGCGCAACCAACTATAAGACGGGTTTTTATTGTTGTCAAAACGTTGTGTGTGGGGAGGAGAAGGGCCCCTGGTGCGGGTGTGCGTACACGACAAGCCGGTTATTGAGAAAATGCGAACGAATCGAGGACCGGTTTTCGGAATAGTTGCGTCTTTTCGCTCTCCCCGTCCGCATGAATCTCTTCAACAGTCTCTCTACCTCTCTCTCTCTCCCTGTCGCTGCGAACCGTGTTGCTGTTTGCCGCCTCTGGGTCTCATTTGCCTGTAATTCAGTTTTCTCCCAAATTTTTTTCTCACCATCACTTTCACCATCAGT</canonical>
            <polymorphic>GTTTCTTTGGTTACACTCATCATAAGACTACTGCCAACCTCCATCCTGTCTGCATTTCCGTTTTTTTTCACATTTCTTTACAGTCTCCATCCATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTYAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAATTAGGAGCGGTTGTGAAAATGTGGAAATTGGCGCAACCAACTATAAGACGGGTTTTTATTGTTGTCAAAACGTTGTGTGTGGGGAGGAGAAGGGCCCCTGGTGCGGGTGTGCGTACACGACAAGCCGGTTATTGAGAAAATGCGAACGAATCGAGGACCGGTTTTCGGAATAGTTGCGTCTTTTCGCTCTCCCCGTCCGCATGAATCTCTTCAACAGTCTCTCTACCTCTCTCTCTCTCCCTGTCGCTGCGAACCGTGTTGCTGTTTGCCGCCTCTGGGTCTCATTTGCCTGTAATTCAGTTTTCTCCCAAATTTTTTTCTCACCATCACTTTCACCATCAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>500 230 226 44</canonical_bands>
                <polymorphic_bands>726 230 44</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGATTTATGTAAGGCTTGATTT</pcr_primer_p1>
		<pcr_primer_p2>AGTCGAAATAGTGGTCTTCCTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACT</canonical_amplicon>
		<polymorphic_amplicon>CAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTYAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21289</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>510090</contig_pos>
        <strand>+</strand>
        <context>AATGTATTAA[C/T]AATTGATTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAA</left_flank>
        <right_flank>AATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTCTACAAAAATCGTTTCTTTGGTTACACTCATCATAAGACTACTGCCAACCTCCATCCTGTCTGCATTTCCGTTTTTTTTCACATTTCTTTACAGTCTCCATCCATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAATTAGGAGCGGTTGTGAAAATGTGGAAATTGGCGCAACCAACTATAAGACGGGTTTTTATTGTTGTCAAAACGTTGTGTGTGGGGAGGAGAAGGGCCCCTGGTGCGGGTGTGCGTACACGACAAGCCGGTTATTGAGAAAATGCGAACGAATCGAGGACCGGTTTTCGGAATAGTTGCGTCTTTTCGCTCTCCCCGTCCGCATGAATCTCTTCAACAGTCTCTCTACCTCTCTCTCTCTCCCTGTCGCTGCGAACCGTGTTGCTGTTTGCCGCCTCTGGGTCTCATTTGCCTGTAATTCAGTTTTCTCCCAAATTTTTTTCTCACCAT</canonical>
            <polymorphic>ATTTTCTACAAAAATCGTTTCTTTGGTTACACTCATCATAAGACTACTGCCAACCTCCATCCTGTCTGCATTTCCGTTTTTTTTCACATTTCTTTACAGTCTCCATCCATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAAYAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAATTAGGAGCGGTTGTGAAAATGTGGAAATTGGCGCAACCAACTATAAGACGGGTTTTTATTGTTGTCAAAACGTTGTGTGTGGGGAGGAGAAGGGCCCCTGGTGCGGGTGTGCGTACACGACAAGCCGGTTATTGAGAAAATGCGAACGAATCGAGGACCGGTTTTCGGAATAGTTGCGTCTTTTCGCTCTCCCCGTCCGCATGAATCTCTTCAACAGTCTCTCTACCTCTCTCTCTCTCCCTGTCGCTGCGAACCGTGTTGCTGTTTGCCGCCTCTGGGTCTCATTTGCCTGTAATTCAGTTTTCTCCCAAATTTTTTTCTCACCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGATTTATGTAAGGCTTGATTT</pcr_primer_p1>
		<pcr_primer_p2>AGTCGAAATAGTGGTCTTCCTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACT</canonical_amplicon>
		<polymorphic_amplicon>CAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAAYAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21290</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>510069</contig_pos>
        <strand>+</strand>
        <context>ATGTGCTCKG[A/T]TTAAGTTATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTG</left_flank>
        <right_flank>TTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATGGAATAGATAACGTAACATTTTCTACAAAAATCGTTTCTTTGGTTACACTCATCATAAGACTACTGCCAACCTCCATCCTGTCTGCATTTCCGTTTTTTTTCACATTTCTTTACAGTCTCCATCCATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAATTAGGAGCGGTTGTGAAAATGTGGAAATTGGCGCAACCAACTATAAGACGGGTTTTTATTGTTGTCAAAACGTTGTGTGTGGGGAGGAGAAGGGCCCCTGGTGCGGGTGTGCGTACACGACAAGCCGGTTATTGAGAAAATGCGAACGAATCGAGGACCGGTTTTCGGAATAGTTGCGTCTTTTCGCTCTCCCCGTCCGCATGAATCTCTTCAACAGTCTCTCTACCTCTCTCTCTCTCCCTGTCGCTGCGAACCGTGTTGCTGTTTGCCGCCTCTGGGTCTCATTTGCCTGTAATTCAGTTTTCT</canonical>
            <polymorphic>TTATGGAATAGATAACGTAACATTTTCTACAAAAATCGTTTCTTTGGTTACACTCATCATAAGACTACTGCCAACCTCCATCCTGTCTGCATTTCCGTTTTTTTTCACATTTCTTTACAGTCTCCATCCATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGWTTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAATTAGGAGCGGTTGTGAAAATGTGGAAATTGGCGCAACCAACTATAAGACGGGTTTTTATTGTTGTCAAAACGTTGTGTGTGGGGAGGAGAAGGGCCCCTGGTGCGGGTGTGCGTACACGACAAGCCGGTTATTGAGAAAATGCGAACGAATCGAGGACCGGTTTTCGGAATAGTTGCGTCTTTTCGCTCTCCCCGTCCGCATGAATCTCTTCAACAGTCTCTCTACCTCTCTCTCTCTCCCTGTCGCTGCGAACCGTGTTGCTGTTTGCCGCCTCTGGGTCTCATTTGCCTGTAATTCAGTTTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>260 240 139 133 123 55 30 12 8</canonical_bands>
                <polymorphic_bands>260 240 153 139 133 55 12 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGATTTATGTAAGGCTTGATTT</pcr_primer_p1>
		<pcr_primer_p2>AGTCGAAATAGTGGTCTTCCTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACT</canonical_amplicon>
		<polymorphic_amplicon>CAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGWTTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21291</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>510067</contig_pos>
        <strand>+</strand>
        <context>TAATGTGCTC[G/T]GWTTAAGTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTC</left_flank>
        <right_flank>GATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTATGGAATAGATAACGTAACATTTTCTACAAAAATCGTTTCTTTGGTTACACTCATCATAAGACTACTGCCAACCTCCATCCTGTCTGCATTTCCGTTTTTTTTCACATTTCTTTACAGTCTCCATCCATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAATTAGGAGCGGTTGTGAAAATGTGGAAATTGGCGCAACCAACTATAAGACGGGTTTTTATTGTTGTCAAAACGTTGTGTGTGGGGAGGAGAAGGGCCCCTGGTGCGGGTGTGCGTACACGACAAGCCGGTTATTGAGAAAATGCGAACGAATCGAGGACCGGTTTTCGGAATAGTTGCGTCTTTTCGCTCTCCCCGTCCGCATGAATCTCTTCAACAGTCTCTCTACCTCTCTCTCTCTCCCTGTCGCTGCGAACCGTGTTGCTGTTTGCCGCCTCTGGGTCTCATTTGCCTGTAATTCAGTTTT</canonical>
            <polymorphic>CTTTATGGAATAGATAACGTAACATTTTCTACAAAAATCGTTTCTTTGGTTACACTCATCATAAGACTACTGCCAACCTCCATCCTGTCTGCATTTCCGTTTTTTTTCACATTTCTTTACAGTCTCCATCCATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCKGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAATTAGGAGCGGTTGTGAAAATGTGGAAATTGGCGCAACCAACTATAAGACGGGTTTTTATTGTTGTCAAAACGTTGTGTGTGGGGAGGAGAAGGGCCCCTGGTGCGGGTGTGCGTACACGACAAGCCGGTTATTGAGAAAATGCGAACGAATCGAGGACCGGTTTTCGGAATAGTTGCGTCTTTTCGCTCTCCCCGTCCGCATGAATCTCTTCAACAGTCTCTCTACCTCTCTCTCTCTCCCTGTCGCTGCGAACCGTGTTGCTGTTTGCCGCCTCTGGGTCTCATTTGCCTGTAATTCAGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGATTTATGTAAGGCTTGATTT</pcr_primer_p1>
		<pcr_primer_p2>AGTCGAAATAGTGGTCTTCCTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACT</canonical_amplicon>
		<polymorphic_amplicon>CAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCKGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21292</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>510017</contig_pos>
        <strand>+</strand>
        <context>ATGGCGAAAT[G/T]TGGAATTCGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAAT</left_flank>
        <right_flank>TGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACTGTCATTATTATTTTGAGCGGATAATTTTTCAAAAAACTCAAACAACTTTATGGAATAGATAACGTAACATTTTCTACAAAAATCGTTTCTTTGGTTACACTCATCATAAGACTACTGCCAACCTCCATCCTGTCTGCATTTCCGTTTTTTTTCACATTTCTTTACAGTCTCCATCCATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAATTAGGAGCGGTTGTGAAAATGTGGAAATTGGCGCAACCAACTATAAGACGGGTTTTTATTGTTGTCAAAACGTTGTGTGTGGGGAGGAGAAGGGCCCCTGGTGCGGGTGTGCGTACACGACAAGCCGGTTATTGAGAAAATGCGAACGAATCGAGGACCGGTTTTCGGAATAGTTGCGTCTTTTCGCTCTCCCCGTCCGCATGAATCTCTTCAACAGTCTCTCTACCTCTCTCTCTCTCCCTGTCGCTGCGAAC</canonical>
            <polymorphic>TAACTGTCATTATTATTTTGAGCGGATAATTTTTCAAAAAACTCAAACAACTTTATGGAATAGATAACGTAACATTTTCTACAAAAATCGTTTCTTTGGTTACACTCATCATAAGACTACTGCCAACCTCCATCCTGTCTGCATTTCCGTTTTTTTTCACATTTCTTTACAGTCTCCATCCATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATKTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAATTAGGAGCGGTTGTGAAAATGTGGAAATTGGCGCAACCAACTATAAGACGGGTTTTTATTGTTGTCAAAACGTTGTGTGTGGGGAGGAGAAGGGCCCCTGGTGCGGGTGTGCGTACACGACAAGCCGGTTATTGAGAAAATGCGAACGAATCGAGGACCGGTTTTCGGAATAGTTGCGTCTTTTCGCTCTCCCCGTCCGCATGAATCTCTTCAACAGTCTCTCTACCTCTCTCTCTCTCCCTGTCGCTGCGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>167 142 137 104 102 63 55 54 50 34 31 22 10 8 6 6 3 2 2 2</canonical_bands>
                <polymorphic_bands>201 142 137 104 102 63 55 54 50 31 22 10 8 6 6 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCCCGCCATAAGTATGTA</pcr_primer_p1>
		<pcr_primer_p2>GCAGCTTCTAGTATTTATTGTACG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGC</canonical_amplicon>
		<polymorphic_amplicon>TCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATKTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21293</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>509977</contig_pos>
        <strand>+</strand>
        <context>TATAGTCAGA[G/T]AACAGATTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGA</left_flank>
        <right_flank>AACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCAGTTTCTGAAACATTTATTCGAAAACCTGGTATCATTAACTGTCATTATTATTTTGAGCGGATAATTTTTCAAAAAACTCAAACAACTTTATGGAATAGATAACGTAACATTTTCTACAAAAATCGTTTCTTTGGTTACACTCATCATAAGACTACTGCCAACCTCCATCCTGTCTGCATTTCCGTTTTTTTTCACATTTCTTTACAGTCTCCATCCATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAATTAGGAGCGGTTGTGAAAATGTGGAAATTGGCGCAACCAACTATAAGACGGGTTTTTATTGTTGTCAAAACGTTGTGTGTGGGGAGGAGAAGGGCCCCTGGTGCGGGTGTGCGTACACGACAAGCCGGTTATTGAGAAAATGCGAACGAATCGAGGACCGGTTTTCGGAATAGTTGCGTCTTTTCGCTCTCCCCGTCCGCATGAATCTCTTCAA</canonical>
            <polymorphic>TTGCAGTTTCTGAAACATTTATTCGAAAACCTGGTATCATTAACTGTCATTATTATTTTGAGCGGATAATTTTTCAAAAAACTCAAACAACTTTATGGAATAGATAACGTAACATTTTCTACAAAAATCGTTTCTTTGGTTACACTCATCATAAGACTACTGCCAACCTCCATCCTGTCTGCATTTCCGTTTTTTTTCACATTTCTTTACAGTCTCCATCCATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGAKAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAATTAGGAGCGGTTGTGAAAATGTGGAAATTGGCGCAACCAACTATAAGACGGGTTTTTATTGTTGTCAAAACGTTGTGTGTGGGGAGGAGAAGGGCCCCTGGTGCGGGTGTGCGTACACGACAAGCCGGTTATTGAGAAAATGCGAACGAATCGAGGACCGGTTTTCGGAATAGTTGCGTCTTTTCGCTCTCCCCGTCCGCATGAATCTCTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTTGAAATGATGTGTCA</pcr_primer_p1>
		<pcr_primer_p2>AAAGTGCAAAATTAGTTTTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGAKAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21294</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>509952</contig_pos>
        <strand>+</strand>
        <context>GGTTTTTYGT[C/T]CAAGTCTTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGT</left_flank>
        <right_flank>CAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTTTGTCGCTCCGTTACGACCATTTGCAGTTTCTGAAACATTTATTCGAAAACCTGGTATCATTAACTGTCATTATTATTTTGAGCGGATAATTTTTCAAAAAACTCAAACAACTTTATGGAATAGATAACGTAACATTTTCTACAAAAATCGTTTCTTTGGTTACACTCATCATAAGACTACTGCCAACCTCCATCCTGTCTGCATTTCCGTTTTTTTTCACATTTCTTTACAGTCTCCATCCATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAATTAGGAGCGGTTGTGAAAATGTGGAAATTGGCGCAACCAACTATAAGACGGGTTTTTATTGTTGTCAAAACGTTGTGTGTGGGGAGGAGAAGGGCCCCTGGTGCGGGTGTGCGTACACGACAAGCCGGTTATTGAGAAAATGCGAACGAATCGAGGACCGGTTTTCGGAATAGTTGCGTCTTTTCGCTC</canonical>
            <polymorphic>AGTTTTGTCGCTCCGTTACGACCATTTGCAGTTTCTGAAACATTTATTCGAAAACCTGGTATCATTAACTGTCATTATTATTTTGAGCGGATAATTTTTCAAAAAACTCAAACAACTTTATGGAATAGATAACGTAACATTTTCTACAAAAATCGTTTCTTTGGTTACACTCATCATAAGACTACTGCCAACCTCCATCCTGTCTGCATTTCCGTTTTTTTTCACATTTCTTTACAGTCTCCATCCATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTYCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAATTAGGAGCGGTTGTGAAAATGTGGAAATTGGCGCAACCAACTATAAGACGGGTTTTTATTGTTGTCAAAACGTTGTGTGTGGGGAGGAGAAGGGCCCCTGGTGCGGGTGTGCGTACACGACAAGCCGGTTATTGAGAAAATGCGAACGAATCGAGGACCGGTTTTCGGAATAGTTGCGTCTTTTCGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTTGAAATGATGTGTCA</pcr_primer_p1>
		<pcr_primer_p2>AAAGTGCAAAATTAGTTTTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTYCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21295</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>509949</contig_pos>
        <strand>+</strand>
        <context>ACCGGTTTTT[C/T]GTYCAAGTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTT</left_flank>
        <right_flank>GTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGTTTTGTCGCTCCGTTACGACCATTTGCAGTTTCTGAAACATTTATTCGAAAACCTGGTATCATTAACTGTCATTATTATTTTGAGCGGATAATTTTTCAAAAAACTCAAACAACTTTATGGAATAGATAACGTAACATTTTCTACAAAAATCGTTTCTTTGGTTACACTCATCATAAGACTACTGCCAACCTCCATCCTGTCTGCATTTCCGTTTTTTTTCACATTTCTTTACAGTCTCCATCCATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAATTAGGAGCGGTTGTGAAAATGTGGAAATTGGCGCAACCAACTATAAGACGGGTTTTTATTGTTGTCAAAACGTTGTGTGTGGGGAGGAGAAGGGCCCCTGGTGCGGGTGTGCGTACACGACAAGCCGGTTATTGAGAAAATGCGAACGAATCGAGGACCGGTTTTCGGAATAGTTGCGTCTTTTCG</canonical>
            <polymorphic>AAAAGTTTTGTCGCTCCGTTACGACCATTTGCAGTTTCTGAAACATTTATTCGAAAACCTGGTATCATTAACTGTCATTATTATTTTGAGCGGATAATTTTTCAAAAAACTCAAACAACTTTATGGAATAGATAACGTAACATTTTCTACAAAAATCGTTTCTTTGGTTACACTCATCATAAGACTACTGCCAACCTCCATCCTGTCTGCATTTCCGTTTTTTTTCACATTTCTTTACAGTCTCCATCCATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTYGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAATTAGGAGCGGTTGTGAAAATGTGGAAATTGGCGCAACCAACTATAAGACGGGTTTTTATTGTTGTCAAAACGTTGTGTGTGGGGAGGAGAAGGGCCCCTGGTGCGGGTGTGCGTACACGACAAGCCGGTTATTGAGAAAATGCGAACGAATCGAGGACCGGTTTTCGGAATAGTTGCGTCTTTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTTGAAATGATGTGTCA</pcr_primer_p1>
		<pcr_primer_p2>AAAGTGCAAAATTAGTTTTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTYGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21296</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>509861</contig_pos>
        <strand></strand>
        <context>CACCATTGCT[T/A]GAATTTAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCT</left_flank>
        <right_flank>GAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCATAGAAACGATGAGCATCATTTCATTTGTCCCATCAGTGTTCTTTTTTCAGATTCTATTCTGATGTTCAAATAGTCATCTAACCAAAAGTTTTGTCGCTCCGTTACGACCATTTGCAGTTTCTGAAACATTTATTCGAAAACCTGGTATCATTAACTGTCATTATTATTTTGAGCGGATAATTTTTCAAAAAACTCAAACAACTTTATGGAATAGATAACGTAACATTTTCTACAAAAATCGTTTCTTTGGTTACACTCATCATAAGACTACTGCCAACCTCCATCCTGTCTGCATTTCCGTTTTTTTTCACATTTCTTTACAGTCTCCATCCATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAATTAGGAGCGGTTGTGAAAATGTGGAAATTGGCGCAACCAACTATAAGACGGGTTTTTATTGTTGTCAAAACGTTGTGTGTGGGGAGGAGAAGGGCCCC</canonical>
            <polymorphic>CAGCATAGAAACGATGAGCATCATTTCATTTGTCCCATCAGTGTTCTTTTTTCAGATTCTATTCTGATGTTCAAATAGTCATCTAACCAAAAGTTTTGTCGCTCCGTTACGACCATTTGCAGTTTCTGAAACATTTATTCGAAAACCTGGTATCATTAACTGTCATTATTATTTTGAGCGGATAATTTTTCAAAAAACTCAAACAACTTTATGGAATAGATAACGTAACATTTTCTACAAAAATCGTTTCTTTGGTTACACTCATCATAAGACTACTGCCAACCTCCATCCTGTCTGCATTTCCGTTTTTTTTCACATTTCTTTACAGTCTCCATCCATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTWGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAATTAGGAGCGGTTGTGAAAATGTGGAAATTGGCGCAACCAACTATAAGACGGGTTTTTATTGTTGTCAAAACGTTGTGTGTGGGGAGGAGAAGGGCCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTTATTCTTACGAAACCAG</pcr_primer_p1>
		<pcr_primer_p2>CTGACTATAAATCGGAAGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTWGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21297</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>549441</contig_pos>
        <strand>+</strand>
        <context>TTTTGGAGTT[A/G]ACTCGTTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTT</left_flank>
        <right_flank>ACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTAT</right_flank>
        <qual_score>146</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGGACAAATTATCCGTCGAATACCTGCGTGCCACCATTGATGCCTTCCCTCGACGACTTCGTGCCGTGGTCGCTGCCAAAGGAGGTAGAATCGAATAATTTTTGTTGAATTATGATTTCAAGCGTTGAAATAAACTATCTGTTAAATTTCGTCTTAATCTCGCATCTACTTCTGGAGATAACGTCATCTACACTTGCACACGTAATTTTGGCGGACCCTGTATGCGGCTGTCCATATAAAACGTCGAAAAGGAGAGGATTTTTGTCATCTTTTCTCACTCTAGTATCGTAGTCTCTTCTAAAAATTATGGCTTAATTTTAATTTATTTCCTAGAGATTGAGTCACCCATATACAAAGTCAACATTTAGAGTCAGTGCTAGTCGCCCTCCAACCCACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGAC</canonical>
            <polymorphic>ATGGGACAAATTATCCGTCGAATACCTGCGTGCCACCATTGATGCCTTCCCTCGACGACTTCGTGCCGTGGTCGCTGCCAAAGGAGGTAGAATCGAATAATTTTTGTTGAATTATGATTTCAAGCGTTGAAATAAACTATCTGTTAAATTTCGTCTTAATCTCGCATCTACTTCTGGAGATAACGTCATCTACACTTGCACACGTAATTTTGGCGGACCCTGTATGCGGCTGTCCATATAAAACGTCGAAAAGGAGAGGATTTTTGTCATCTTTTCTCACTCTAGTATCGTAGTCTCTTCTAAAAATTATGGCTTAATTTTAATTTATTTCCTAGAGATTGAGTCACCCATATACAAAGTCAACATTTAGAGTCAGTGCTAGTCGCCCTCCAACCCACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTRACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>501 361 138</canonical_bands>
                <polymorphic_bands>639 361</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>311 251 130 126 90 63 29</canonical_bands>
                <polymorphic_bands>311 251 193 126 90 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACACATCTGAATGGTTATCTG</pcr_primer_p1>
		<pcr_primer_p2>TATTCAAGATGCACCCAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATA</canonical_amplicon>
		<polymorphic_amplicon>CACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTRACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21299</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>549485</contig_pos>
        <strand>+</strand>
        <context>CACCCTGAGT[A/G]CCGTATCCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGT</left_flank>
        <right_flank>CCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGAT</right_flank>
        <qual_score>146</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTCCCTCGACGACTTCGTGCCGTGGTCGCTGCCAAAGGAGGTAGAATCGAATAATTTTTGTTGAATTATGATTTCAAGCGTTGAAATAAACTATCTGTTAAATTTCGTCTTAATCTCGCATCTACTTCTGGAGATAACGTCATCTACACTTGCACACGTAATTTTGGCGGACCCTGTATGCGGCTGTCCATATAAAACGTCGAAAAGGAGAGGATTTTTGTCATCTTTTCTCACTCTAGTATCGTAGTCTCTTCTAAAAATTATGGCTTAATTTTAATTTATTTCCTAGAGATTGAGTCACCCATATACAAAGTCAACATTTAGAGTCAGTGCTAGTCGCCCTCCAACCCACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATT</canonical>
            <polymorphic>CCTTCCCTCGACGACTTCGTGCCGTGGTCGCTGCCAAAGGAGGTAGAATCGAATAATTTTTGTTGAATTATGATTTCAAGCGTTGAAATAAACTATCTGTTAAATTTCGTCTTAATCTCGCATCTACTTCTGGAGATAACGTCATCTACACTTGCACACGTAATTTTGGCGGACCCTGTATGCGGCTGTCCATATAAAACGTCGAAAAGGAGAGGATTTTTGTCATCTTTTCTCACTCTAGTATCGTAGTCTCTTCTAAAAATTATGGCTTAATTTTAATTTATTTCCTAGAGATTGAGTCACCCATATACAAAGTCAACATTTAGAGTCAGTGCTAGTCGCCCTCCAACCCACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTRCCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>502 306 192</canonical_bands>
                <polymorphic_bands>808 192</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACACATCTGAATGGTTATCTG</pcr_primer_p1>
		<pcr_primer_p2>TATTCAAGATGCACCCAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATA</canonical_amplicon>
		<polymorphic_amplicon>CACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTRCCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21301</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>549496</contig_pos>
        <strand>+</strand>
        <context>CCGTATCCAT[A/G]AGATGCAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCAT</left_flank>
        <right_flank>AGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTC</right_flank>
        <qual_score>146</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGACTTCGTGCCGTGGTCGCTGCCAAAGGAGGTAGAATCGAATAATTTTTGTTGAATTATGATTTCAAGCGTTGAAATAAACTATCTGTTAAATTTCGTCTTAATCTCGCATCTACTTCTGGAGATAACGTCATCTACACTTGCACACGTAATTTTGGCGGACCCTGTATGCGGCTGTCCATATAAAACGTCGAAAAGGAGAGGATTTTTGTCATCTTTTCTCACTCTAGTATCGTAGTCTCTTCTAAAAATTATGGCTTAATTTTAATTTATTTCCTAGAGATTGAGTCACCCATATACAAAGTCAACATTTAGAGTCAGTGCTAGTCGCCCTCCAACCCACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATG</canonical>
            <polymorphic>CGACTTCGTGCCGTGGTCGCTGCCAAAGGAGGTAGAATCGAATAATTTTTGTTGAATTATGATTTCAAGCGTTGAAATAAACTATCTGTTAAATTTCGTCTTAATCTCGCATCTACTTCTGGAGATAACGTCATCTACACTTGCACACGTAATTTTGGCGGACCCTGTATGCGGCTGTCCATATAAAACGTCGAAAAGGAGAGGATTTTTGTCATCTTTTCTCACTCTAGTATCGTAGTCTCTTCTAAAAATTATGGCTTAATTTTAATTTATTTCCTAGAGATTGAGTCACCCATATACAAAGTCAACATTTAGAGTCAGTGCTAGTCGCCCTCCAACCCACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATRAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>497 443 60</canonical_bands>
                <polymorphic_bands>940 60</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACACATCTGAATGGTTATCTG</pcr_primer_p1>
		<pcr_primer_p2>TATTCAAGATGCACCCAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATA</canonical_amplicon>
		<polymorphic_amplicon>CACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATRAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21303</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>549548</contig_pos>
        <strand>+</strand>
        <context>CTTCAGTTCT[G/T]CTCAACACTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCT</left_flank>
        <right_flank>CTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATA</right_flank>
        <qual_score>149</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAATTATGATTTCAAGCGTTGAAATAAACTATCTGTTAAATTTCGTCTTAATCTCGCATCTACTTCTGGAGATAACGTCATCTACACTTGCACACGTAATTTTGGCGGACCCTGTATGCGGCTGTCCATATAAAACGTCGAAAAGGAGAGGATTTTTGTCATCTTTTCTCACTCTAGTATCGTAGTCTCTTCTAAAAATTATGGCTTAATTTTAATTTATTTCCTAGAGATTGAGTCACCCATATACAAAGTCAACATTTAGAGTCAGTGCTAGTCGCCCTCCAACCCACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGA</canonical>
            <polymorphic>TGAATTATGATTTCAAGCGTTGAAATAAACTATCTGTTAAATTTCGTCTTAATCTCGCATCTACTTCTGGAGATAACGTCATCTACACTTGCACACGTAATTTTGGCGGACCCTGTATGCGGCTGTCCATATAAAACGTCGAAAAGGAGAGGATTTTTGTCATCTTTTCTCACTCTAGTATCGTAGTCTCTTCTAAAAATTATGGCTTAATTTTAATTTATTTCCTAGAGATTGAGTCACCCATATACAAAGTCAACATTTAGAGTCAGTGCTAGTCGCCCTCCAACCCACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTKCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGTTGAAGCATATATCAACAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGCTGTGTGTTGTTTCAC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAA</canonical_amplicon>
		<polymorphic_amplicon>CTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTKCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21305</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>549594</contig_pos>
        <strand>+</strand>
        <context>ATAGTTTACT[C/T]AAWMATTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACT</left_flank>
        <right_flank>AATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCT</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTAATCTCGCATCTACTTCTGGAGATAACGTCATCTACACTTGCACACGTAATTTTGGCGGACCCTGTATGCGGCTGTCCATATAAAACGTCGAAAAGGAGAGGATTTTTGTCATCTTTTCTCACTCTAGTATCGTAGTCTCTTCTAAAAATTATGGCTTAATTTTAATTTATTTCCTAGAGATTGAGTCACCCATATACAAAGTCAACATTTAGAGTCAGTGCTAGTCGCCCTCCAACCCACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATTATAA</canonical>
            <polymorphic>TCTTAATCTCGCATCTACTTCTGGAGATAACGTCATCTACACTTGCACACGTAATTTTGGCGGACCCTGTATGCGGCTGTCCATATAAAACGTCGAAAAGGAGAGGATTTTTGTCATCTTTTCTCACTCTAGTATCGTAGTCTCTTCTAAAAATTATGGCTTAATTTTAATTTATTTCCTAGAGATTGAGTCACCCATATACAAAGTCAACATTTAGAGTCAGTGCTAGTCGCCCTCCAACCCACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTYAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATTATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>197 186 158 142 135 129 44 6 3</canonical_bands>
                <polymorphic_bands>339 186 158 135 129 44 6 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCGTTGAAGCATATATCAACAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGCTGTGTGTTGTTTCAC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAA</canonical_amplicon>
		<polymorphic_amplicon>CTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTYAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21306</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>549597</contig_pos>
        <strand>+</strand>
        <context>GTTTACTYAA[A/T]MATTGAAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAA</left_flank>
        <right_flank>AATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAA</right_flank>
        <qual_score>146</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATCTCGCATCTACTTCTGGAGATAACGTCATCTACACTTGCACACGTAATTTTGGCGGACCCTGTATGCGGCTGTCCATATAAAACGTCGAAAAGGAGAGGATTTTTGTCATCTTTTCTCACTCTAGTATCGTAGTCTCTTCTAAAAATTATGGCTTAATTTTAATTTATTTCCTAGAGATTGAGTCACCCATATACAAAGTCAACATTTAGAGTCAGTGCTAGTCGCCCTCCAACCCACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATTATAAAAA</canonical>
            <polymorphic>TAATCTCGCATCTACTTCTGGAGATAACGTCATCTACACTTGCACACGTAATTTTGGCGGACCCTGTATGCGGCTGTCCATATAAAACGTCGAAAAGGAGAGGATTTTTGTCATCTTTTCTCACTCTAGTATCGTAGTCTCTTCTAAAAATTATGGCTTAATTTTAATTTATTTCCTAGAGATTGAGTCACCCATATACAAAGTCAACATTTAGAGTCAGTGCTAGTCGCCCTCCAACCCACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAAWAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATTATAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGTTGAAGCATATATCAACAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGCTGTGTGTTGTTTCAC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAA</canonical_amplicon>
		<polymorphic_amplicon>CTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAAWAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21307</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>549598</contig_pos>
        <strand>+</strand>
        <context>TTTACTYAAW[A/C]ATTGAAAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAAT</left_flank>
        <right_flank>ATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAA</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCTCGCATCTACTTCTGGAGATAACGTCATCTACACTTGCACACGTAATTTTGGCGGACCCTGTATGCGGCTGTCCATATAAAACGTCGAAAAGGAGAGGATTTTTGTCATCTTTTCTCACTCTAGTATCGTAGTCTCTTCTAAAAATTATGGCTTAATTTTAATTTATTTCCTAGAGATTGAGTCACCCATATACAAAGTCAACATTTAGAGTCAGTGCTAGTCGCCCTCCAACCCACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATTATAAAAAC</canonical>
            <polymorphic>AATCTCGCATCTACTTCTGGAGATAACGTCATCTACACTTGCACACGTAATTTTGGCGGACCCTGTATGCGGCTGTCCATATAAAACGTCGAAAAGGAGAGGATTTTTGTCATCTTTTCTCACTCTAGTATCGTAGTCTCTTCTAAAAATTATGGCTTAATTTTAATTTATTTCCTAGAGATTGAGTCACCCATATACAAAGTCAACATTTAGAGTCAGTGCTAGTCGCCCTCCAACCCACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATMATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATTATAAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>248 144 101 99 87 84 59 48 42 38 33 11 6</canonical_bands>
                <polymorphic_bands>248 188 144 99 84 59 48 42 38 33 11 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCGTTGAAGCATATATCAACAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGCTGTGTGTTGTTTCAC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAA</canonical_amplicon>
		<polymorphic_amplicon>CTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATMATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21311</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>549617</contig_pos>
        <strand>+</strand>
        <context>AAAAGAACCA[A/G]AGGTAGTGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCA</left_flank>
        <right_flank>AGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTG</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGATAACGTCATCTACACTTGCACACGTAATTTTGGCGGACCCTGTATGCGGCTGTCCATATAAAACGTCGAAAAGGAGAGGATTTTTGTCATCTTTTCTCACTCTAGTATCGTAGTCTCTTCTAAAAATTATGGCTTAATTTTAATTTATTTCCTAGAGATTGAGTCACCCATATACAAAGTCAACATTTAGAGTCAGTGCTAGTCGCCCTCCAACCCACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATTATAAAAACGGAAAAATTACAAAAATAA</canonical>
            <polymorphic>GAGATAACGTCATCTACACTTGCACACGTAATTTTGGCGGACCCTGTATGCGGCTGTCCATATAAAACGTCGAAAAGGAGAGGATTTTTGTCATCTTTTCTCACTCTAGTATCGTAGTCTCTTCTAAAAATTATGGCTTAATTTTAATTTATTTCCTAGAGATTGAGTCACCCATATACAAAGTCAACATTTAGAGTCAGTGCTAGTCGCCCTCCAACCCACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCARAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATTATAAAAACGGAAAAATTACAAAAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGTTGAAGCATATATCAACAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGCTGTGTGTTGTTTCAC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAA</canonical_amplicon>
		<polymorphic_amplicon>CTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCARAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21313</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>549654</contig_pos>
        <strand>+</strand>
        <context>TGAAAAGTAA[G/T]CTTACAGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAA</left_flank>
        <right_flank>CTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCT</right_flank>
        <qual_score>146</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGACCCTGTATGCGGCTGTCCATATAAAACGTCGAAAAGGAGAGGATTTTTGTCATCTTTTCTCACTCTAGTATCGTAGTCTCTTCTAAAAATTATGGCTTAATTTTAATTTATTTCCTAGAGATTGAGTCACCCATATACAAAGTCAACATTTAGAGTCAGTGCTAGTCGCCCTCCAACCCACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATTATAAAAACGGAAAAATTACAAAAATAAAAAGTTCAAAAAACAGTTTTTTCCTTCAAGAAAAAGA</canonical>
            <polymorphic>CGGACCCTGTATGCGGCTGTCCATATAAAACGTCGAAAAGGAGAGGATTTTTGTCATCTTTTCTCACTCTAGTATCGTAGTCTCTTCTAAAAATTATGGCTTAATTTTAATTTATTTCCTAGAGATTGAGTCACCCATATACAAAGTCAACATTTAGAGTCAGTGCTAGTCGCCCTCCAACCCACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAKCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATTATAAAAACGGAAAAATTACAAAAATAAAAAGTTCAAAAAACAGTTTTTTCCTTCAAGAAAAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>490 383 117 10</canonical_bands>
                <polymorphic_bands>490 383 127</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>326 164 151 133 117 83 16 10</canonical_bands>
                <polymorphic_bands>326 164 151 133 127 83 16</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGTGCATCTTGAATAGTTTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTGAACTGAAAATTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>GGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAKCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21315</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>549700</contig_pos>
        <strand></strand>
        <context>CACAGCAAAA[A/C]MTCTACTTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAA</left_flank>
        <right_flank>TTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTGTCATCTTTTCTCACTCTAGTATCGTAGTCTCTTCTAAAAATTATGGCTTAATTTTAATTTATTTCCTAGAGATTGAGTCACCCATATACAAAGTCAACATTTAGAGTCAGTGCTAGTCGCCCTCCAACCCACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATTATAAAAACGGAAAAATTACAAAAATAAAAAGTTCAAAAAACAGTTTTTTCCTTCAAGAAAAAGAAATTTAATTACTTTTATTTCCTGAAGCTTTTTTGACGAGAAAGTTG</canonical>
            <polymorphic>ATTTTTGTCATCTTTTCTCACTCTAGTATCGTAGTCTCTTCTAAAAATTATGGCTTAATTTTAATTTATTTCCTAGAGATTGAGTCACCCATATACAAAGTCAACATTTAGAGTCAGTGCTAGTCGCCCTCCAACCCACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAMTTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATTATAAAAACGGAAAAATTACAAAAATAAAAAGTTCAAAAAACAGTTTTTTCCTTCAAGAAAAAGAAATTTAATTACTTTTATTTCCTGAAGCTTTTTTGACGAGAAAGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>423 310 188 46 33</canonical_bands>
                <polymorphic_bands>423 310 221 46</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>248 149 101 87 84 59 51 45 42 41 38 33 11 6 5</canonical_bands>
                <polymorphic_bands>248 149 134 87 84 59 51 45 42 41 38 11 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGACAAACCTGAAAAGTAA</pcr_primer_p1>
		<pcr_primer_p2>TATTTCGCAATTGTAGCGTAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATA</canonical_amplicon>
		<polymorphic_amplicon>CGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAMTTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21317</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>549728</contig_pos>
        <strand></strand>
        <context>AGGGAAGATA[G/T]KAAAATTTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATA</left_flank>
        <right_flank>GAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTAGTCTCTTCTAAAAATTATGGCTTAATTTTAATTTATTTCCTAGAGATTGAGTCACCCATATACAAAGTCAACATTTAGAGTCAGTGCTAGTCGCCCTCCAACCCACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATTATAAAAACGGAAAAATTACAAAAATAAAAAGTTCAAAAAACAGTTTTTTCCTTCAAGAAAAAGAAATTTAATTACTTTTATTTCCTGAAGCTTTTTTGACGAGAAAGTTGCCAACAACTTTGGTTTCCGGTGCCCAGT</canonical>
            <polymorphic>TCGTAGTCTCTTCTAAAAATTATGGCTTAATTTTAATTTATTTCCTAGAGATTGAGTCACCCATATACAAAGTCAACATTTAGAGTCAGTGCTAGTCGCCCTCCAACCCACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAKGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATTATAAAAACGGAAAAATTACAAAAATAAAAAGTTCAAAAAACAGTTTTTTCCTTCAAGAAAAAGAAATTTAATTACTTTTATTTCCTGAAGCTTTTTTGACGAGAAAGTTGCCAACAACTTTGGTTTCCGGTGCCCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGACAAACCTGAAAAGTAA</pcr_primer_p1>
		<pcr_primer_p2>TATTTCGCAATTGTAGCGTAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATA</canonical_amplicon>
		<polymorphic_amplicon>CGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAKGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21319</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>549779</contig_pos>
        <strand>+</strand>
        <context>AAACGAATTG[C/T]TAATGTAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTG</left_flank>
        <right_flank>TAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAGTCACCCATATACAAAGTCAACATTTAGAGTCAGTGCTAGTCGCCCTCCAACCCACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATTATAAAAACGGAAAAATTACAAAAATAAAAAGTTCAAAAAACAGTTTTTTCCTTCAAGAAAAAGAAATTTAATTACTTTTATTTCCTGAAGCTTTTTTGACGAGAAAGTTGCCAACAACTTTGGTTTCCGGTGCCCAGTCAGAAAGTCACTTTTACAATTTACTAGGGGCTCCGTTTGTTCTTCGTGTCC</canonical>
            <polymorphic>TTGAGTCACCCATATACAAAGTCAACATTTAGAGTCAGTGCTAGTCGCCCTCCAACCCACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGYTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATTATAAAAACGGAAAAATTACAAAAATAAAAAGTTCAAAAAACAGTTTTTTCCTTCAAGAAAAAGAAATTTAATTACTTTTATTTCCTGAAGCTTTTTTGACGAGAAAGTTGCCAACAACTTTGGTTTCCGGTGCCCAGTCAGAAAGTCACTTTTACAATTTACTAGGGGCTCCGTTTGTTCTTCGTGTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>250 197 142 129 121 117 44</canonical_bands>
                <polymorphic_bands>250 197 173 142 121 117</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAACAACACACAGCAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCTAGACATTGATGTTTTTAAATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGG</canonical_amplicon>
		<polymorphic_amplicon>TGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGYTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21321</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>549802</contig_pos>
        <strand>+</strand>
        <context>CAGTTATGAA[C/T]TAATAAAACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAA</left_flank>
        <right_flank>TAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACATTTAGAGTCAGTGCTAGTCGCCCTCCAACCCACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATTATAAAAACGGAAAAATTACAAAAATAAAAAGTTCAAAAAACAGTTTTTTCCTTCAAGAAAAAGAAATTTAATTACTTTTATTTCCTGAAGCTTTTTTGACGAGAAAGTTGCCAACAACTTTGGTTTCCGGTGCCCAGTCAGAAAGTCACTTTTACAATTTACTAGGGGCTCCGTTTGTTCTTCGTGTCCGTTATAGTTATTTTCGTTTTGTT</canonical>
            <polymorphic>AACATTTAGAGTCAGTGCTAGTCGCCCTCCAACCCACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAAYTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATTATAAAAACGGAAAAATTACAAAAATAAAAAGTTCAAAAAACAGTTTTTTCCTTCAAGAAAAAGAAATTTAATTACTTTTATTTCCTGAAGCTTTTTTGACGAGAAAGTTGCCAACAACTTTGGTTTCCGGTGCCCAGTCAGAAAGTCACTTTTACAATTTACTAGGGGCTCCGTTTGTTCTTCGTGTCCGTTATAGTTATTTTCGTTTTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAACAACACACAGCAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCTAGACATTGATGTTTTTAAATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGG</canonical_amplicon>
		<polymorphic_amplicon>TGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAAYTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21323</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>549834</contig_pos>
        <strand>+</strand>
        <context>AGAAAAACAA[A/G]ACAGATTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAA</left_flank>
        <right_flank>ACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATTATAAAAACGGAAAAATTACAAAAATAAAAAGTTCAAAAAACAGTTTTTTCCTTCAAGAAAAAGAAATTTAATTACTTTTATTTCCTGAAGCTTTTTTGACGAGAAAGTTGCCAACAACTTTGGTTTCCGGTGCCCAGTCAGAAAGTCACTTTTACAATTTACTAGGGGCTCCGTTTGTTCTTCGTGTCCGTTATAGTTATTTTCGTTTTGTTTTTCTGAAATTACGTATCTATAAATTACATAT</canonical>
            <polymorphic>CCCACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAARACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATTATAAAAACGGAAAAATTACAAAAATAAAAAGTTCAAAAAACAGTTTTTTCCTTCAAGAAAAAGAAATTTAATTACTTTTATTTCCTGAAGCTTTTTTGACGAGAAAGTTGCCAACAACTTTGGTTTCCGGTGCCCAGTCAGAAAGTCACTTTTACAATTTACTAGGGGCTCCGTTTGTTCTTCGTGTCCGTTATAGTTATTTTCGTTTTGTTTTTCTGAAATTACGTATCTATAAATTACATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAACAACACACAGCAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCTAGACATTGATGTTTTTAAATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGG</canonical_amplicon>
		<polymorphic_amplicon>TGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAARACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21324</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>549941</contig_pos>
        <strand>+</strand>
        <context>GGGGGCATGA[C/T]ATAAATAGTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGA</left_flank>
        <right_flank>ATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATTATAAAAACGGAAAAATTACAAAAATAAAAAGTTCAAAAAACAGTTTTTTCCTTCAAGAAAAAGAAATTTAATTACTTTTATTTCCTGAAGCTTTTTTGACGAGAAAGTTGCCAACAACTTTGGTTTCCGGTGCCCAGTCAGAAAGTCACTTTTACAATTTACTAGGGGCTCCGTTTGTTCTTCGTGTCCGTTATAGTTATTTTCGTTTTGTTTTTCTGAAATTACGTATCTATAAATTACATATTCGTCTTCTTCTCCACCAGCCACACAATTTTTTCGTCTTCTTCTCCACCAGCCACACATTTCGTCTTCTTCTCCACCAGCCACACATGGTCTACGGGTGCAATATCC</canonical>
            <polymorphic>ACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGAYATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATTATAAAAACGGAAAAATTACAAAAATAAAAAGTTCAAAAAACAGTTTTTTCCTTCAAGAAAAAGAAATTTAATTACTTTTATTTCCTGAAGCTTTTTTGACGAGAAAGTTGCCAACAACTTTGGTTTCCGGTGCCCAGTCAGAAAGTCACTTTTACAATTTACTAGGGGCTCCGTTTGTTCTTCGTGTCCGTTATAGTTATTTTCGTTTTGTTTTTCTGAAATTACGTATCTATAAATTACATATTCGTCTTCTTCTCCACCAGCCACACAATTTTTTCGTCTTCTTCTCCACCAGCCACACATTTCGTCTTCTTCTCCACCAGCCACACATGGTCTACGGGTGCAATATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAACATTTCCAAAAACCTAC</pcr_primer_p1>
		<pcr_primer_p2>AATGAGAAAAGTGAAATGAAACA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATT</canonical_amplicon>
		<polymorphic_amplicon>CTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGAYATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21325</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>549956</contig_pos>
        <strand>+</strand>
        <context>ATAGTGGGCA[A/T]TTTTTTGGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCA</left_flank>
        <right_flank>TTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATTATAAAAACGGAAAAATTACAAAAATAAAAAGTTCAAAAAACAGTTTTTTCCTTCAAGAAAAAGAAATTTAATTACTTTTATTTCCTGAAGCTTTTTTGACGAGAAAGTTGCCAACAACTTTGGTTTCCGGTGCCCAGTCAGAAAGTCACTTTTACAATTTACTAGGGGCTCCGTTTGTTCTTCGTGTCCGTTATAGTTATTTTCGTTTTGTTTTTCTGAAATTACGTATCTATAAATTACATATTCGTCTTCTTCTCCACCAGCCACACAATTTTTTCGTCTTCTTCTCCACCAGCCACACATTTCGTCTTCTTCTCCACCAGCCACACATGGTCTACGGGTGCAATATCCAATCCGGACCCCGTC</canonical>
            <polymorphic>TATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAWTTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATTATAAAAACGGAAAAATTACAAAAATAAAAAGTTCAAAAAACAGTTTTTTCCTTCAAGAAAAAGAAATTTAATTACTTTTATTTCCTGAAGCTTTTTTGACGAGAAAGTTGCCAACAACTTTGGTTTCCGGTGCCCAGTCAGAAAGTCACTTTTACAATTTACTAGGGGCTCCGTTTGTTCTTCGTGTCCGTTATAGTTATTTTCGTTTTGTTTTTCTGAAATTACGTATCTATAAATTACATATTCGTCTTCTTCTCCACCAGCCACACAATTTTTTCGTCTTCTTCTCCACCAGCCACACATTTCGTCTTCTTCTCCACCAGCCACACATGGTCTACGGGTGCAATATCCAATCCGGACCCCGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>149 101 97 87 86 84 64 59 54 51 42 38 35 33 15 5</canonical_bands>
                <polymorphic_bands>233 101 97 87 86 64 59 54 51 42 38 35 33 15 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAACATTTCCAAAAACCTAC</pcr_primer_p1>
		<pcr_primer_p2>AATGAGAAAAGTGAAATGAAACA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATT</canonical_amplicon>
		<polymorphic_amplicon>CTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAWTTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21326</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>552977</contig_pos>
        <strand>+</strand>
        <context>CGAAATATGC[G/T]ACAGCTTCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAAAAGTTTTGTTTCCAGATAGGTAAAGGCAACCGTCGGCGAAATATGC</left_flank>
        <right_flank>ACAGCTTCGATCTGATGAGAAACCGAAGAAACCTGTGCCACTCATAAGGA</right_flank>
        <qual_score>146</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTTTTGAGATTTTTGAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGTAGGTCTTCAATTTTGTTCCGCTTATTTAGGTAGGAGCCTAGATAGGAGTCAAAAATTTCCTAATTCATGCTCTCCCTCGGTTTGACGTTCGTACAGCTGATGTAGGTTTGTACCATTCTGACTATACAATCAAGCTATATAATCTCGTGTACGATTCGGAAGACTGCATTCATATAGTAGTATTTTTCAGTGCTCTCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTTGTTTCCAGATAGGTAAAGGCAACCGTCGGCGAAATATGCTACAGCTTCGATCTGATGAGAAACCGAAGAAACCTGTGCCACTCATAAGGAAAGAACCGTTCCAGTACGAATTTGGCCTACTTGGTTATGTGGCTGTCACTGGCGTTATCATCTTCTTTGCCACGATTCTTTTCCAAACAAGTTTTGTGCAGAACTTCTTGAACAATGCTTCTGGAAGCGCTGATGGAGATCGTCCTAAAATTCTTCAGAGACTACTCGTTTCCCGTAGCTCATACAACAATAACCCAAGGGACCTATGGCATGCCAATTTTCTCTGAAGCTTCCAAAAAAGATGTAATCCCATATTCATCACGTCTTGAAGTGTCTATAAACGAATTTCGAATGCACAGATTTTTTATTCTTCAGAATGCACAAAACTTTTGTTCACATTCCTCGGCGAAACCTTGAACCCTTTCCAGCTAATTTGCTTTCCACACGCGGACTTAGGGGTAAAATCATATCAGTGAAAAATTTGTGAAGAAGTAGATAACAGAGGGTTTC</canonical>
            <polymorphic>GAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTTTTGAGATTTTTGAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGTAGGTCTTCAATTTTGTTCCGCTTATTTAGGTAGGAGCCTAGATAGGAGTCAAAAATTTCCTAATTCATGCTCTCCCTCGGTTTGACGTTCGTACAGCTGATGTAGGTTTGTACCATTCTGACTATACAATCAAGCTATATAATCTCGTGTACGATTCGGAAGACTGCATTCATATAGTAGTATTTTTCAGTGCTCTCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTTGTTTCCAGATAGGTAAAGGCAACCGTCGGCGAAATATGCKACAGCTTCGATCTGATGAGAAACCGAAGAAACCTGTGCCACTCATAAGGAAAGAACCGTTCCAGTACGAATTTGGCCTACTTGGTTATGTGGCTGTCACTGGCGTTATCATCTTCTTTGCCACGATTCTTTTCCAAACAAGTTTTGTGCAGAACTTCTTGAACAATGCTTCTGGAAGCGCTGATGGAGATCGTCCTAAAATTCTTCAGAGACTACTCGTTTCCCGTAGCTCATACAACAATAACCCAAGGGACCTATGGCATGCCAATTTTCTCTGAAGCTTCCAAAAAAGATGTAATCCCATATTCATCACGTCTTGAAGTGTCTATAAACGAATTTCGAATGCACAGATTTTTTATTCTTCAGAATGCACAAAACTTTTGTTCACATTCCTCGGCGAAACCTTGAACCCTTTCCAGCTAATTTGCTTTCCACACGCGGACTTAGGGGTAAAATCATATCAGTGAAAAATTTGTGAAGAAGTAGATAACAGAGGGTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTGCTCTCATTTTGATTTTAT</pcr_primer_p1>
		<pcr_primer_p2>ACAAAACTTGTTTGGAAAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAGTGCTCTCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTTGTTTCCAGATAGGTAAAGGCAACCGTCGGCGAAATATGCTACAGCTTCGATCTGATGAGAAACCGAAGAAACCTGTGCCACTCATAAGGAAAGAACCGTTCCAGTACGAATTTGGCCTACTTGGTTATGTGGCTGTCACTGGCGTTATCATCTTCTTTGCCACGATTCTTTTCCAAACAAGTTTTGT</canonical_amplicon>
		<polymorphic_amplicon>CAGTGCTCTCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTTGTTTCCAGATAGGTAAAGGCAACCGTCGGCGAAATATGCKACAGCTTCGATCTGATGAGAAACCGAAGAAACCTGTGCCACTCATAAGGAAAGAACCGTTCCAGTACGAATTTGGCCTACTTGGTTATGTGGCTGTCACTGGCGTTATCATCTTCTTTGCCACGATTCTTTTCCAAACAAGTTTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21327</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>552951</contig_pos>
        <strand>+</strand>
        <context>TCCAGATRGG[A/T]AAAGGCAACC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTTGTTTCCAGATAGG</left_flank>
        <right_flank>AAAGGCAACCGTCGGCGAAATATGCTACAGCTTCGATCTGATGAGAAACC</right_flank>
        <qual_score>149</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATTCAAAACTAAATTGTTTTTTCCGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTTTTGAGATTTTTGAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGTAGGTCTTCAATTTTGTTCCGCTTATTTAGGTAGGAGCCTAGATAGGAGTCAAAAATTTCCTAATTCATGCTCTCCCTCGGTTTGACGTTCGTACAGCTGATGTAGGTTTGTACCATTCTGACTATACAATCAAGCTATATAATCTCGTGTACGATTCGGAAGACTGCATTCATATAGTAGTATTTTTCAGTGCTCTCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTTGTTTCCAGATAGGTAAAGGCAACCGTCGGCGAAATATGCTACAGCTTCGATCTGATGAGAAACCGAAGAAACCTGTGCCACTCATAAGGAAAGAACCGTTCCAGTACGAATTTGGCCTACTTGGTTATGTGGCTGTCACTGGCGTTATCATCTTCTTTGCCACGATTCTTTTCCAAACAAGTTTTGTGCAGAACTTCTTGAACAATGCTTCTGGAAGCGCTGATGGAGATCGTCCTAAAATTCTTCAGAGACTACTCGTTTCCCGTAGCTCATACAACAATAACCCAAGGGACCTATGGCATGCCAATTTTCTCTGAAGCTTCCAAAAAAGATGTAATCCCATATTCATCACGTCTTGAAGTGTCTATAAACGAATTTCGAATGCACAGATTTTTTATTCTTCAGAATGCACAAAACTTTTGTTCACATTCCTCGGCGAAACCTTGAACCCTTTCCAGCTAATTTGCTTTCCACACGCGGACTTAGGGGTAAAATCATATCAGTGAAAAATTTG</canonical>
            <polymorphic>ATATTCAAAACTAAATTGTTTTTTCCGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTTTTGAGATTTTTGAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGTAGGTCTTCAATTTTGTTCCGCTTATTTAGGTAGGAGCCTAGATAGGAGTCAAAAATTTCCTAATTCATGCTCTCCCTCGGTTTGACGTTCGTACAGCTGATGTAGGTTTGTACCATTCTGACTATACAATCAAGCTATATAATCTCGTGTACGATTCGGAAGACTGCATTCATATAGTAGTATTTTTCAGTGCTCTCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTTGTTTCCAGATAGGWAAAGGCAACCGTCGGCGAAATATGCTACAGCTTCGATCTGATGAGAAACCGAAGAAACCTGTGCCACTCATAAGGAAAGAACCGTTCCAGTACGAATTTGGCCTACTTGGTTATGTGGCTGTCACTGGCGTTATCATCTTCTTTGCCACGATTCTTTTCCAAACAAGTTTTGTGCAGAACTTCTTGAACAATGCTTCTGGAAGCGCTGATGGAGATCGTCCTAAAATTCTTCAGAGACTACTCGTTTCCCGTAGCTCATACAACAATAACCCAAGGGACCTATGGCATGCCAATTTTCTCTGAAGCTTCCAAAAAAGATGTAATCCCATATTCATCACGTCTTGAAGTGTCTATAAACGAATTTCGAATGCACAGATTTTTTATTCTTCAGAATGCACAAAACTTTTGTTCACATTCCTCGGCGAAACCTTGAACCCTTTCCAGCTAATTTGCTTTCCACACGCGGACTTAGGGGTAAAATCATATCAGTGAAAAATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTGCTCTCATTTTGATTTTAT</pcr_primer_p1>
		<pcr_primer_p2>ACAAAACTTGTTTGGAAAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAGTGCTCTCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTTGTTTCCAGATAGGTAAAGGCAACCGTCGGCGAAATATGCTACAGCTTCGATCTGATGAGAAACCGAAGAAACCTGTGCCACTCATAAGGAAAGAACCGTTCCAGTACGAATTTGGCCTACTTGGTTATGTGGCTGTCACTGGCGTTATCATCTTCTTTGCCACGATTCTTTTCCAAACAAGTTTTGT</canonical_amplicon>
		<polymorphic_amplicon>CAGTGCTCTCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTTGTTTCCAGATAGGWAAAGGCAACCGTCGGCGAAATATGCTACAGCTTCGATCTGATGAGAAACCGAAGAAACCTGTGCCACTCATAAGGAAAGAACCGTTCCAGTACGAATTTGGCCTACTTGGTTATGTGGCTGTCACTGGCGTTATCATCTTCTTTGCCACGATTCTTTTCCAAACAAGTTTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21328</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>552948</contig_pos>
        <strand>+</strand>
        <context>GTTTCCAGAT[A/G]GGWAAAGGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTTGTTTCCAGAT</left_flank>
        <right_flank>GGTAAAGGCAACCGTCGGCGAAATATGCTACAGCTTCGATCTGATGAGAA</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCATATTCAAAACTAAATTGTTTTTTCCGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTTTTGAGATTTTTGAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGTAGGTCTTCAATTTTGTTCCGCTTATTTAGGTAGGAGCCTAGATAGGAGTCAAAAATTTCCTAATTCATGCTCTCCCTCGGTTTGACGTTCGTACAGCTGATGTAGGTTTGTACCATTCTGACTATACAATCAAGCTATATAATCTCGTGTACGATTCGGAAGACTGCATTCATATAGTAGTATTTTTCAGTGCTCTCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTTGTTTCCAGATAGGTAAAGGCAACCGTCGGCGAAATATGCTACAGCTTCGATCTGATGAGAAACCGAAGAAACCTGTGCCACTCATAAGGAAAGAACCGTTCCAGTACGAATTTGGCCTACTTGGTTATGTGGCTGTCACTGGCGTTATCATCTTCTTTGCCACGATTCTTTTCCAAACAAGTTTTGTGCAGAACTTCTTGAACAATGCTTCTGGAAGCGCTGATGGAGATCGTCCTAAAATTCTTCAGAGACTACTCGTTTCCCGTAGCTCATACAACAATAACCCAAGGGACCTATGGCATGCCAATTTTCTCTGAAGCTTCCAAAAAAGATGTAATCCCATATTCATCACGTCTTGAAGTGTCTATAAACGAATTTCGAATGCACAGATTTTTTATTCTTCAGAATGCACAAAACTTTTGTTCACATTCCTCGGCGAAACCTTGAACCCTTTCCAGCTAATTTGCTTTCCACACGCGGACTTAGGGGTAAAATCATATCAGTGAAAAAT</canonical>
            <polymorphic>ATCATATTCAAAACTAAATTGTTTTTTCCGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTTTTGAGATTTTTGAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGTAGGTCTTCAATTTTGTTCCGCTTATTTAGGTAGGAGCCTAGATAGGAGTCAAAAATTTCCTAATTCATGCTCTCCCTCGGTTTGACGTTCGTACAGCTGATGTAGGTTTGTACCATTCTGACTATACAATCAAGCTATATAATCTCGTGTACGATTCGGAAGACTGCATTCATATAGTAGTATTTTTCAGTGCTCTCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTTGTTTCCAGATRGGTAAAGGCAACCGTCGGCGAAATATGCTACAGCTTCGATCTGATGAGAAACCGAAGAAACCTGTGCCACTCATAAGGAAAGAACCGTTCCAGTACGAATTTGGCCTACTTGGTTATGTGGCTGTCACTGGCGTTATCATCTTCTTTGCCACGATTCTTTTCCAAACAAGTTTTGTGCAGAACTTCTTGAACAATGCTTCTGGAAGCGCTGATGGAGATCGTCCTAAAATTCTTCAGAGACTACTCGTTTCCCGTAGCTCATACAACAATAACCCAAGGGACCTATGGCATGCCAATTTTCTCTGAAGCTTCCAAAAAAGATGTAATCCCATATTCATCACGTCTTGAAGTGTCTATAAACGAATTTCGAATGCACAGATTTTTTATTCTTCAGAATGCACAAAACTTTTGTTCACATTCCTCGGCGAAACCTTGAACCCTTTCCAGCTAATTTGCTTTCCACACGCGGACTTAGGGGTAAAATCATATCAGTGAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTGCTCTCATTTTGATTTTAT</pcr_primer_p1>
		<pcr_primer_p2>ACAAAACTTGTTTGGAAAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAGTGCTCTCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTTGTTTCCAGATAGGTAAAGGCAACCGTCGGCGAAATATGCTACAGCTTCGATCTGATGAGAAACCGAAGAAACCTGTGCCACTCATAAGGAAAGAACCGTTCCAGTACGAATTTGGCCTACTTGGTTATGTGGCTGTCACTGGCGTTATCATCTTCTTTGCCACGATTCTTTTCCAAACAAGTTTTGT</canonical_amplicon>
		<polymorphic_amplicon>CAGTGCTCTCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTTGTTTCCAGATRGGTAAAGGCAACCGTCGGCGAAATATGCTACAGCTTCGATCTGATGAGAAACCGAAGAAACCTGTGCCACTCATAAGGAAAGAACCGTTCCAGTACGAATTTGGCCTACTTGGTTATGTGGCTGTCACTGGCGTTATCATCTTCTTTGCCACGATTCTTTTCCAAACAAGTTTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21329</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>552937</contig_pos>
        <strand>+</strand>
        <context>TGAAAAGTTT[C/T]GTTTCCAGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTT</left_flank>
        <right_flank>GTTTCCAGATAGGTAAAGGCAACCGTCGGCGAAATATGCTACAGCTTCGA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGTCACCCAAATCATATTCAAAACTAAATTGTTTTTTCCGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTTTTGAGATTTTTGAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGTAGGTCTTCAATTTTGTTCCGCTTATTTAGGTAGGAGCCTAGATAGGAGTCAAAAATTTCCTAATTCATGCTCTCCCTCGGTTTGACGTTCGTACAGCTGATGTAGGTTTGTACCATTCTGACTATACAATCAAGCTATATAATCTCGTGTACGATTCGGAAGACTGCATTCATATAGTAGTATTTTTCAGTGCTCTCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTTGTTTCCAGATAGGTAAAGGCAACCGTCGGCGAAATATGCTACAGCTTCGATCTGATGAGAAACCGAAGAAACCTGTGCCACTCATAAGGAAAGAACCGTTCCAGTACGAATTTGGCCTACTTGGTTATGTGGCTGTCACTGGCGTTATCATCTTCTTTGCCACGATTCTTTTCCAAACAAGTTTTGTGCAGAACTTCTTGAACAATGCTTCTGGAAGCGCTGATGGAGATCGTCCTAAAATTCTTCAGAGACTACTCGTTTCCCGTAGCTCATACAACAATAACCCAAGGGACCTATGGCATGCCAATTTTCTCTGAAGCTTCCAAAAAAGATGTAATCCCATATTCATCACGTCTTGAAGTGTCTATAAACGAATTTCGAATGCACAGATTTTTTATTCTTCAGAATGCACAAAACTTTTGTTCACATTCCTCGGCGAAACCTTGAACCCTTTCCAGCTAATTTGCTTTCCACACGCGGACTTAGGGGTAAAATCATAT</canonical>
            <polymorphic>GGGTCACCCAAATCATATTCAAAACTAAATTGTTTTTTCCGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTTTTGAGATTTTTGAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGTAGGTCTTCAATTTTGTTCCGCTTATTTAGGTAGGAGCCTAGATAGGAGTCAAAAATTTCCTAATTCATGCTCTCCCTCGGTTTGACGTTCGTACAGCTGATGTAGGTTTGTACCATTCTGACTATACAATCAAGCTATATAATCTCGTGTACGATTCGGAAGACTGCATTCATATAGTAGTATTTTTCAGTGCTCTCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTYGTTTCCAGATAGGTAAAGGCAACCGTCGGCGAAATATGCTACAGCTTCGATCTGATGAGAAACCGAAGAAACCTGTGCCACTCATAAGGAAAGAACCGTTCCAGTACGAATTTGGCCTACTTGGTTATGTGGCTGTCACTGGCGTTATCATCTTCTTTGCCACGATTCTTTTCCAAACAAGTTTTGTGCAGAACTTCTTGAACAATGCTTCTGGAAGCGCTGATGGAGATCGTCCTAAAATTCTTCAGAGACTACTCGTTTCCCGTAGCTCATACAACAATAACCCAAGGGACCTATGGCATGCCAATTTTCTCTGAAGCTTCCAAAAAAGATGTAATCCCATATTCATCACGTCTTGAAGTGTCTATAAACGAATTTCGAATGCACAGATTTTTTATTCTTCAGAATGCACAAAACTTTTGTTCACATTCCTCGGCGAAACCTTGAACCCTTTCCAGCTAATTTGCTTTCCACACGCGGACTTAGGGGTAAAATCATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTGCTCTCATTTTGATTTTAT</pcr_primer_p1>
		<pcr_primer_p2>ACAAAACTTGTTTGGAAAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAGTGCTCTCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTTGTTTCCAGATAGGTAAAGGCAACCGTCGGCGAAATATGCTACAGCTTCGATCTGATGAGAAACCGAAGAAACCTGTGCCACTCATAAGGAAAGAACCGTTCCAGTACGAATTTGGCCTACTTGGTTATGTGGCTGTCACTGGCGTTATCATCTTCTTTGCCACGATTCTTTTCCAAACAAGTTTTGT</canonical_amplicon>
		<polymorphic_amplicon>CAGTGCTCTCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTYGTTTCCAGATAGGTAAAGGCAACCGTCGGCGAAATATGCTACAGCTTCGATCTGATGAGAAACCGAAGAAACCTGTGCCACTCATAAGGAAAGAACCGTTCCAGTACGAATTTGGCCTACTTGGTTATGTGGCTGTCACTGGCGTTATCATCTTCTTTGCCACGATTCTTTTCCAAACAAGTTTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21330</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>552692</contig_pos>
        <strand>+</strand>
        <context>GAACGGAAGT[A/C]GGTCTTCAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGT</left_flank>
        <right_flank>GGTCTTCAATTTTGTTCCGCTTATTTAGGTAGGAGCCTAGATAGGAGTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATAAATACGCTAAAATTGCTTTCCCAGGTATCAAAATGAAACCCAAGTGCAACAGCATTCATCCAATGAAAGAAAACGAAAAGCCAAACATAGATGCCAAACTGGAAGAATTTTCCGATGACGATGATGATAGCCTTATGGACGTCACTCTTCCAATGAACAAGAAATGTTATGTTATCTATGTCATTGCCTTCATTTCGTTCGCCTGTTTCATCGTTGTTATCGTCGTGCTGAAGGAAGAGTTGGGTCACCCAAATCATATTCAAAACTAAATTGTTTTTTCCGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTTTTGAGATTTTTGAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGTAGGTCTTCAATTTTGTTCCGCTTATTTAGGTAGGAGCCTAGATAGGAGTCAAAAATTTCCTAATTCATGCTCTCCCTCGGTTTGACGTTCGTACAGCTGATGTAGGTTTGTACCATTCTGACTATACAATCAAGCTATATAATCTCGTGTACGATTCGGAAGACTGCATTCATATAGTAGTATTTTTCAGTGCTCTCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTTGTTTCCAGATAGGTAAAGGCAACCGTCGGCGAAATATGCTACAGCTTCGATCTGATGAGAAACCGAAGAAACCTGTGCCACTCATAAGGAAAGAACCGTTCCAGTACGAATTTGGCCTACTTGGTTATGTGGCTGTCACTGGCGTTATCATCTTCTTTGCCACGATTCTTTTCCAAACAAGTTTTGTGCAGAACTTCTTGAACAATGCTTCTGGAAGCGCTGATGGAGATCGTCCTAAAATTCTTCAGAGACTAC</canonical>
            <polymorphic>CATAAATACGCTAAAATTGCTTTCCCAGGTATCAAAATGAAACCCAAGTGCAACAGCATTCATCCAATGAAAGAAAACGAAAAGCCAAACATAGATGCCAAACTGGAAGAATTTTCCGATGACGATGATGATAGCCTTATGGACGTCACTCTTCCAATGAACAAGAAATGTTATGTTATCTATGTCATTGCCTTCATTTCGTTCGCCTGTTTCATCGTTGTTATCGTCGTGCTGAAGGAAGAGTTGGGTCACCCAAATCATATTCAAAACTAAATTGTTTTTTCCGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTTTTGAGATTTTTGAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGTMGGTCTTCAATTTTGTTCCGCTTATTTAGGTAGGAGCCTAGATAGGAGTCAAAAATTTCCTAATTCATGCTCTCCCTCGGTTTGACGTTCGTACAGCTGATGTAGGTTTGTACCATTCTGACTATACAATCAAGCTATATAATCTCGTGTACGATTCGGAAGACTGCATTCATATAGTAGTATTTTTCAGTGCTCTCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTTGTTTCCAGATAGGTAAAGGCAACCGTCGGCGAAATATGCTACAGCTTCGATCTGATGAGAAACCGAAGAAACCTGTGCCACTCATAAGGAAAGAACCGTTCCAGTACGAATTTGGCCTACTTGGTTATGTGGCTGTCACTGGCGTTATCATCTTCTTTGCCACGATTCTTTTCCAAACAAGTTTTGTGCAGAACTTCTTGAACAATGCTTCTGGAAGCGCTGATGGAGATCGTCCTAAAATTCTTCAGAGACTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATGTTCATTAGGTTTTGAGA</pcr_primer_p1>
		<pcr_primer_p2>CGTACACGAGATTATATAGCTTGA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GAAATGTTCATTAGGTTTTGAGATTTTTGAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGTAGGTCTTCAATTTTGTTCCGCTTATTTAGGTAGGAGCCTAGATAGGAGTCAAAAATTTCCTAATTCATGCTCTCCCTCGGTTTGACGTTCGTACAGCTGATGTAGGTTTGTACCATTCTGACTATACAATCAAGCTATATAATCTCGTGTACG</canonical_amplicon>
		<polymorphic_amplicon>GAAATGTTCATTAGGTTTTGAGATTTTTGAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGTMGGTCTTCAATTTTGTTCCGCTTATTTAGGTAGGAGCCTAGATAGGAGTCAAAAATTTCCTAATTCATGCTCTCCCTCGGTTTGACGTTCGTACAGCTGATGTAGGTTTGTACCATTCTGACTATACAATCAAGCTATATAATCTCGTGTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21331</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>552631</contig_pos>
        <strand>+</strand>
        <context>TTGAGATTTT[G/T]GAAAGTGAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTTTTGAGATTTT</left_flank>
        <right_flank>GAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGTTCTAATAGATTTTCAATAAAAATCGTATTTTCCCCTCCTGTTAAACCAACGTGACTCATAAATACGCTAAAATTGCTTTCCCAGGTATCAAAATGAAACCCAAGTGCAACAGCATTCATCCAATGAAAGAAAACGAAAAGCCAAACATAGATGCCAAACTGGAAGAATTTTCCGATGACGATGATGATAGCCTTATGGACGTCACTCTTCCAATGAACAAGAAATGTTATGTTATCTATGTCATTGCCTTCATTTCGTTCGCCTGTTTCATCGTTGTTATCGTCGTGCTGAAGGAAGAGTTGGGTCACCCAAATCATATTCAAAACTAAATTGTTTTTTCCGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTTTTGAGATTTTTGAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGTAGGTCTTCAATTTTGTTCCGCTTATTTAGGTAGGAGCCTAGATAGGAGTCAAAAATTTCCTAATTCATGCTCTCCCTCGGTTTGACGTTCGTACAGCTGATGTAGGTTTGTACCATTCTGACTATACAATCAAGCTATATAATCTCGTGTACGATTCGGAAGACTGCATTCATATAGTAGTATTTTTCAGTGCTCTCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTTGTTTCCAGATAGGTAAAGGCAACCGTCGGCGAAATATGCTACAGCTTCGATCTGATGAGAAACCGAAGAAACCTGTGCCACTCATAAGGAAAGAACCGTTCCAGTACGAATTTGGCCTACTTGGTTATGTGGCTGTCACTGGCGTTATCATCTTCTTTGCCACGATTCTTTTCCAAACAAGTTTTGTGCAGAAC</canonical>
            <polymorphic>TTTGTTCTAATAGATTTTCAATAAAAATCGTATTTTCCCCTCCTGTTAAACCAACGTGACTCATAAATACGCTAAAATTGCTTTCCCAGGTATCAAAATGAAACCCAAGTGCAACAGCATTCATCCAATGAAAGAAAACGAAAAGCCAAACATAGATGCCAAACTGGAAGAATTTTCCGATGACGATGATGATAGCCTTATGGACGTCACTCTTCCAATGAACAAGAAATGTTATGTTATCTATGTCATTGCCTTCATTTCGTTCGCCTGTTTCATCGTTGTTATCGTCGTGCTGAAGGAAGAGTTGGGTCACCCAAATCATATTCAAAACTAAATTGTTTTTTCCGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTTTTGAGATTTTKGAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGTAGGTCTTCAATTTTGTTCCGCTTATTTAGGTAGGAGCCTAGATAGGAGTCAAAAATTTCCTAATTCATGCTCTCCCTCGGTTTGACGTTCGTACAGCTGATGTAGGTTTGTACCATTCTGACTATACAATCAAGCTATATAATCTCGTGTACGATTCGGAAGACTGCATTCATATAGTAGTATTTTTCAGTGCTCTCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTTGTTTCCAGATAGGTAAAGGCAACCGTCGGCGAAATATGCTACAGCTTCGATCTGATGAGAAACCGAAGAAACCTGTGCCACTCATAAGGAAAGAACCGTTCCAGTACGAATTTGGCCTACTTGGTTATGTGGCTGTCACTGGCGTTATCATCTTCTTTGCCACGATTCTTTTCCAAACAAGTTTTGTGCAGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATTTGAATTGTAATTATATGG</pcr_primer_p1>
		<pcr_primer_p2>CTACCTAAATAAGCGGAACAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTTTTGAGATTTTTGAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGTAGGTCTTCAATTTTGTTCCGCTTATTTAGGTAG</canonical_amplicon>
		<polymorphic_amplicon>CGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTTTTGAGATTTTKGAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGTAGGTCTTCAATTTTGTTCCGCTTATTTAGGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21332</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>552593</contig_pos>
        <strand>+</strand>
        <context>AGCATGYCTG[A/G]CATTGGACAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTG</left_flank>
        <right_flank>CATTGGACACGAAATGTTCATTAGGTTTTGAGATTTTTGAAAGTGAGCTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTACCCGTCATCTTGCATCACTATTCACCATCCACATTTGTTCTAATAGATTTTCAATAAAAATCGTATTTTCCCCTCCTGTTAAACCAACGTGACTCATAAATACGCTAAAATTGCTTTCCCAGGTATCAAAATGAAACCCAAGTGCAACAGCATTCATCCAATGAAAGAAAACGAAAAGCCAAACATAGATGCCAAACTGGAAGAATTTTCCGATGACGATGATGATAGCCTTATGGACGTCACTCTTCCAATGAACAAGAAATGTTATGTTATCTATGTCATTGCCTTCATTTCGTTCGCCTGTTTCATCGTTGTTATCGTCGTGCTGAAGGAAGAGTTGGGTCACCCAAATCATATTCAAAACTAAATTGTTTTTTCCGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTTTTGAGATTTTTGAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGTAGGTCTTCAATTTTGTTCCGCTTATTTAGGTAGGAGCCTAGATAGGAGTCAAAAATTTCCTAATTCATGCTCTCCCTCGGTTTGACGTTCGTACAGCTGATGTAGGTTTGTACCATTCTGACTATACAATCAAGCTATATAATCTCGTGTACGATTCGGAAGACTGCATTCATATAGTAGTATTTTTCAGTGCTCTCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTTGTTTCCAGATAGGTAAAGGCAACCGTCGGCGAAATATGCTACAGCTTCGATCTGATGAGAAACCGAAGAAACCTGTGCCACTCATAAGGAAAGAACCGTTCCAGTACGAATTTGGCCTACTTGGTTATGTGGCTGTCACTGGCGTTATCATCTTCT</canonical>
            <polymorphic>ACTTACCCGTCATCTTGCATCACTATTCACCATCCACATTTGTTCTAATAGATTTTCAATAAAAATCGTATTTTCCCCTCCTGTTAAACCAACGTGACTCATAAATACGCTAAAATTGCTTTCCCAGGTATCAAAATGAAACCCAAGTGCAACAGCATTCATCCAATGAAAGAAAACGAAAAGCCAAACATAGATGCCAAACTGGAAGAATTTTCCGATGACGATGATGATAGCCTTATGGACGTCACTCTTCCAATGAACAAGAAATGTTATGTTATCTATGTCATTGCCTTCATTTCGTTCGCCTGTTTCATCGTTGTTATCGTCGTGCTGAAGGAAGAGTTGGGTCACCCAAATCATATTCAAAACTAAATTGTTTTTTCCGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGRCATTGGACACGAAATGTTCATTAGGTTTTGAGATTTTTGAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGTAGGTCTTCAATTTTGTTCCGCTTATTTAGGTAGGAGCCTAGATAGGAGTCAAAAATTTCCTAATTCATGCTCTCCCTCGGTTTGACGTTCGTACAGCTGATGTAGGTTTGTACCATTCTGACTATACAATCAAGCTATATAATCTCGTGTACGATTCGGAAGACTGCATTCATATAGTAGTATTTTTCAGTGCTCTCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTTGTTTCCAGATAGGTAAAGGCAACCGTCGGCGAAATATGCTACAGCTTCGATCTGATGAGAAACCGAAGAAACCTGTGCCACTCATAAGGAAAGAACCGTTCCAGTACGAATTTGGCCTACTTGGTTATGTGGCTGTCACTGGCGTTATCATCTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>219 216 168 141 114 103 39</canonical_bands>
                <polymorphic_bands>333 216 168 141 103 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAATTTGAATTGTAATTATATGG</pcr_primer_p1>
		<pcr_primer_p2>CTACCTAAATAAGCGGAACAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTTTTGAGATTTTTGAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGTAGGTCTTCAATTTTGTTCCGCTTATTTAGGTAG</canonical_amplicon>
		<polymorphic_amplicon>CGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGRCATTGGACACGAAATGTTCATTAGGTTTTGAGATTTTTGAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGTAGGTCTTCAATTTTGTTCCGCTTATTTAGGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21333</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>552589</contig_pos>
        <strand>+</strand>
        <context>AAACAGCATG[C/T]CTGRCATTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATG</left_flank>
        <right_flank>CTGACATTGGACACGAAATGTTCATTAGGTTTTGAGATTTTTGAAAGTGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGACTTACCCGTCATCTTGCATCACTATTCACCATCCACATTTGTTCTAATAGATTTTCAATAAAAATCGTATTTTCCCCTCCTGTTAAACCAACGTGACTCATAAATACGCTAAAATTGCTTTCCCAGGTATCAAAATGAAACCCAAGTGCAACAGCATTCATCCAATGAAAGAAAACGAAAAGCCAAACATAGATGCCAAACTGGAAGAATTTTCCGATGACGATGATGATAGCCTTATGGACGTCACTCTTCCAATGAACAAGAAATGTTATGTTATCTATGTCATTGCCTTCATTTCGTTCGCCTGTTTCATCGTTGTTATCGTCGTGCTGAAGGAAGAGTTGGGTCACCCAAATCATATTCAAAACTAAATTGTTTTTTCCGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTTTTGAGATTTTTGAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGTAGGTCTTCAATTTTGTTCCGCTTATTTAGGTAGGAGCCTAGATAGGAGTCAAAAATTTCCTAATTCATGCTCTCCCTCGGTTTGACGTTCGTACAGCTGATGTAGGTTTGTACCATTCTGACTATACAATCAAGCTATATAATCTCGTGTACGATTCGGAAGACTGCATTCATATAGTAGTATTTTTCAGTGCTCTCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTTGTTTCCAGATAGGTAAAGGCAACCGTCGGCGAAATATGCTACAGCTTCGATCTGATGAGAAACCGAAGAAACCTGTGCCACTCATAAGGAAAGAACCGTTCCAGTACGAATTTGGCCTACTTGGTTATGTGGCTGTCACTGGCGTTATCATC</canonical>
            <polymorphic>TGAGACTTACCCGTCATCTTGCATCACTATTCACCATCCACATTTGTTCTAATAGATTTTCAATAAAAATCGTATTTTCCCCTCCTGTTAAACCAACGTGACTCATAAATACGCTAAAATTGCTTTCCCAGGTATCAAAATGAAACCCAAGTGCAACAGCATTCATCCAATGAAAGAAAACGAAAAGCCAAACATAGATGCCAAACTGGAAGAATTTTCCGATGACGATGATGATAGCCTTATGGACGTCACTCTTCCAATGAACAAGAAATGTTATGTTATCTATGTCATTGCCTTCATTTCGTTCGCCTGTTTCATCGTTGTTATCGTCGTGCTGAAGGAAGAGTTGGGTCACCCAAATCATATTCAAAACTAAATTGTTTTTTCCGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGYCTGACATTGGACACGAAATGTTCATTAGGTTTTGAGATTTTTGAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGTAGGTCTTCAATTTTGTTCCGCTTATTTAGGTAGGAGCCTAGATAGGAGTCAAAAATTTCCTAATTCATGCTCTCCCTCGGTTTGACGTTCGTACAGCTGATGTAGGTTTGTACCATTCTGACTATACAATCAAGCTATATAATCTCGTGTACGATTCGGAAGACTGCATTCATATAGTAGTATTTTTCAGTGCTCTCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTTGTTTCCAGATAGGTAAAGGCAACCGTCGGCGAAATATGCTACAGCTTCGATCTGATGAGAAACCGAAGAAACCTGTGCCACTCATAAGGAAAGAACCGTTCCAGTACGAATTTGGCCTACTTGGTTATGTGGCTGTCACTGGCGTTATCATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>501 439 39 21</canonical_bands>
                <polymorphic_bands>522 439 39</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>220 219 168 141 114 99 39</canonical_bands>
                <polymorphic_bands>333 220 168 141 99 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAATTTGAATTGTAATTATATGG</pcr_primer_p1>
		<pcr_primer_p2>CTACCTAAATAAGCGGAACAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTTTTGAGATTTTTGAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGTAGGTCTTCAATTTTGTTCCGCTTATTTAGGTAG</canonical_amplicon>
		<polymorphic_amplicon>CGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGYCTGACATTGGACACGAAATGTTCATTAGGTTTTGAGATTTTTGAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGTAGGTCTTCAATTTTGTTCCGCTTATTTAGGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21334</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>552542</contig_pos>
        <strand>+</strand>
        <context>TTGAACACAT[G/T]AATTAGAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACAT</left_flank>
        <right_flank>AATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTTTGATATTGATGTATTTTTAAAAAGGCAATTTTGAGTCTGTTATGAGACTTACCCGTCATCTTGCATCACTATTCACCATCCACATTTGTTCTAATAGATTTTCAATAAAAATCGTATTTTCCCCTCCTGTTAAACCAACGTGACTCATAAATACGCTAAAATTGCTTTCCCAGGTATCAAAATGAAACCCAAGTGCAACAGCATTCATCCAATGAAAGAAAACGAAAAGCCAAACATAGATGCCAAACTGGAAGAATTTTCCGATGACGATGATGATAGCCTTATGGACGTCACTCTTCCAATGAACAAGAAATGTTATGTTATCTATGTCATTGCCTTCATTTCGTTCGCCTGTTTCATCGTTGTTATCGTCGTGCTGAAGGAAGAGTTGGGTCACCCAAATCATATTCAAAACTAAATTGTTTTTTCCGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTTTTGAGATTTTTGAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGTAGGTCTTCAATTTTGTTCCGCTTATTTAGGTAGGAGCCTAGATAGGAGTCAAAAATTTCCTAATTCATGCTCTCCCTCGGTTTGACGTTCGTACAGCTGATGTAGGTTTGTACCATTCTGACTATACAATCAAGCTATATAATCTCGTGTACGATTCGGAAGACTGCATTCATATAGTAGTATTTTTCAGTGCTCTCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTTGTTTCCAGATAGGTAAAGGCAACCGTCGGCGAAATATGCTACAGCTTCGATCTGATGAGAAACCGAAGAAACCTGTGCCACTCATAAGGAAAGAACCGTTCCAGT</canonical>
            <polymorphic>AAGTTTGATATTGATGTATTTTTAAAAAGGCAATTTTGAGTCTGTTATGAGACTTACCCGTCATCTTGCATCACTATTCACCATCCACATTTGTTCTAATAGATTTTCAATAAAAATCGTATTTTCCCCTCCTGTTAAACCAACGTGACTCATAAATACGCTAAAATTGCTTTCCCAGGTATCAAAATGAAACCCAAGTGCAACAGCATTCATCCAATGAAAGAAAACGAAAAGCCAAACATAGATGCCAAACTGGAAGAATTTTCCGATGACGATGATGATAGCCTTATGGACGTCACTCTTCCAATGAACAAGAAATGTTATGTTATCTATGTCATTGCCTTCATTTCGTTCGCCTGTTTCATCGTTGTTATCGTCGTGCTGAAGGAAGAGTTGGGTCACCCAAATCATATTCAAAACTAAATTGTTTTTTCCGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATKAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTTTTGAGATTTTTGAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGTAGGTCTTCAATTTTGTTCCGCTTATTTAGGTAGGAGCCTAGATAGGAGTCAAAAATTTCCTAATTCATGCTCTCCCTCGGTTTGACGTTCGTACAGCTGATGTAGGTTTGTACCATTCTGACTATACAATCAAGCTATATAATCTCGTGTACGATTCGGAAGACTGCATTCATATAGTAGTATTTTTCAGTGCTCTCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTTGTTTCCAGATAGGTAAAGGCAACCGTCGGCGAAATATGCTACAGCTTCGATCTGATGAGAAACCGAAGAAACCTGTGCCACTCATAAGGAAAGAACCGTTCCAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>483 168 117 91 81 25 21 14</canonical_bands>
                <polymorphic_bands>483 168 117 91 81 39 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCTATGTCATTGCCTTCATTT</pcr_primer_p1>
		<pcr_primer_p2>AACCTAATGAACATTTCGTGTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATCTATGTCATTGCCTTCATTTCGTTCGCCTGTTTCATCGTTGTTATCGTCGTGCTGAAGGAAGAGTTGGGTCACCCAAATCATATTCAAAACTAAATTGTTTTTTCCGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTT</canonical_amplicon>
		<polymorphic_amplicon>TATCTATGTCATTGCCTTCATTTCGTTCGCCTGTTTCATCGTTGTTATCGTCGTGCTGAAGGAAGAGTTGGGTCACCCAAATCATATTCAAAACTAAATTGTTTTTTCCGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATKAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21344</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>552514</contig_pos>
        <strand></strand>
        <context>GAATAAAGTT[T/G]KTAAGCAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AAATTGTTTTTTCCGAATTTGAATTGTAATTATATGGAAAGAATAAAGTT</left_flank>
        <right_flank>TTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCAC</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGTCTTGCTCATTTCCGAAAGCTCGTCAAGTTTGATATTGATGTATTTTTAAAAAGGCAATTTTGAGTCTGTTATGAGACTTACCCGTCATCTTGCATCACTATTCACCATCCACATTTGTTCTAATAGATTTTCAATAAAAATCGTATTTTCCCCTCCTGTTAAACCAACGTGACTCATAAATACGCTAAAATTGCTTTCCCAGGTATCAAAATGAAACCCAAGTGCAACAGCATTCATCCAATGAAAGAAAACGAAAAGCCAAACATAGATGCCAAACTGGAAGAATTTTCCGATGACGATGATGATAGCCTTATGGACGTCACTCTTCCAATGAACAAGAAATGTTATGTTATCTATGTCATTGCCTTCATTTCGTTCGCCTGTTTCATCGTTGTTATCGTCGTGCTGAAGGAAGAGTTGGGTCACCCAAATCATATTCAAAACTAAATTGTTTTTTCCGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTTTTGAGATTTTTGAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGTAGGTCTTCAATTTTGTTCCGCTTATTTAGGTAGGAGCCTAGATAGGAGTCAAAAATTTCCTAATTCATGCTCTCCCTCGGTTTGACGTTCGTACAGCTGATGTAGGTTTGTACCATTCTGACTATACAATCAAGCTATATAATCTCGTGTACGATTCGGAAGACTGCATTCATATAGTAGTATTTTTCAGTGCTCTCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTTGTTTCCAGATAGGTAAAGGCAACCGTCGGCGAAATATGCTACAGCTTCGATCTGATGAGAAACCGAAGAAACCTGTG</canonical>
            <polymorphic>GGGTCTTGCTCATTTCCGAAAGCTCGTCAAGTTTGATATTGATGTATTTTTAAAAAGGCAATTTTGAGTCTGTTATGAGACTTACCCGTCATCTTGCATCACTATTCACCATCCACATTTGTTCTAATAGATTTTCAATAAAAATCGTATTTTCCCCTCCTGTTAAACCAACGTGACTCATAAATACGCTAAAATTGCTTTCCCAGGTATCAAAATGAAACCCAAGTGCAACAGCATTCATCCAATGAAAGAAAACGAAAAGCCAAACATAGATGCCAAACTGGAAGAATTTTCCGATGACGATGATGATAGCCTTATGGACGTCACTCTTCCAATGAACAAGAAATGTTATGTTATCTATGTCATTGCCTTCATTTCGTTCGCCTGTTTCATCGTTGTTATCGTCGTGCTGAAGGAAGAGTTGGGTCACCCAAATCATATTCAAAACTAAATTGTTTTTTCCGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTKTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTTTTGAGATTTTTGAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGTAGGTCTTCAATTTTGTTCCGCTTATTTAGGTAGGAGCCTAGATAGGAGTCAAAAATTTCCTAATTCATGCTCTCCCTCGGTTTGACGTTCGTACAGCTGATGTAGGTTTGTACCATTCTGACTATACAATCAAGCTATATAATCTCGTGTACGATTCGGAAGACTGCATTCATATAGTAGTATTTTTCAGTGCTCTCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTTGTTTCCAGATAGGTAAAGGCAACCGTCGGCGAAATATGCTACAGCTTCGATCTGATGAGAAACCGAAGAAACCTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCTATGTCATTGCCTTCATTT</pcr_primer_p1>
		<pcr_primer_p2>AACCTAATGAACATTTCGTGTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATCTATGTCATTGCCTTCATTTCGTTCGCCTGTTTCATCGTTGTTATCGTCGTGCTGAAGGAAGAGTTGGGTCACCCAAATCATATTCAAAACTAAATTGTTTTTTCCGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTT</canonical_amplicon>
		<polymorphic_amplicon>TATCTATGTCATTGCCTTCATTTCGTTCGCCTGTTTCATCGTTGTTATCGTCGTGCTGAAGGAAGAGTTGGGTCACCCAAATCATATTCAAAACTAAATTGTTTTTTCCGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTKTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21349</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>561193</contig_pos>
        <strand>+</strand>
        <context>TTTAGGCCAA[G/T]AAAGAACGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAGTAAGTATGCTTCTTTTTTCAAATGAATATGCCAGTATTTAGGCCAA</left_flank>
        <right_flank>AAAGAACGCATGAGAAAGATCGCACGGGACCTTCCTGCAACTCAAGCTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGGGCGGAGCTTGCCTCGTGTTTTTTGGGATAGTCTTTATTCATGTCATTTGGATAGTTTCCTCGCTTTTAGAGCCTTTTCTCCATTTTTTAGAATTATTTTTTTCTGTTTTTGCAGAAGCCAATCGGATAAGGCAAGTTGTATGATGGACGCTACAAACAGTAACCCACCGCAGGTAAGCCGTTTTTTTTCCTAATATTATCTTTCCAGTTTGTTTCAGGTGGTAGCCATTCAAAAAAAATTCACCTGGACCACGGCTCAGAGAACCCGCCTTAGTGATGTTTATCAAACTTCTGCGTTCATCACTCAAAAAATGATCGATGAATTGGCAGCTGAACTGGGCGTGGAGAAAACGAAGGTATAAATAACACAACTCTGAACAAGTAACAAATAAATCGTTTCAGGTTGAGCTGTACTTCAACGGAAAACGCTGGTACGAGACAAAAAAAGTAAGTATGCTTCTTTTTTCAAATGAATATGCCAGTATTTAGGCCAATAAAGAACGCATGAGAAAGATCGCACGGGACCTTCCTGCAACTCAAGCTACAAATGTTGTCATCCCAGCTATCCCAGCGATGCCAATGGGAACGGCAAACAACGGACCACCGGTTAGTTCATTAAAGAAAAAGCTTACGATGAAAACGGTAAGTTTTCAGATTGCCGTTCATCCGGCGTTGGATGTTCCACACCATGGAACTCCGATTAACTGGGGGAACTATCAATGGGGTACCCCAGCTGCAATGCCAATGCAAAACCAGGTGAATATATTACCAACTGAGAACTTGGAAGACTAAATGGGTTTCAGCCAATGCTCGGCTTCGATCCACTTGGTTATGGTCACGCTCATGTTGGACTCTACAATGCCAACTACGCCAATGCTCCAGCATTTGCACCACCAGCTCAAAATGCCATGAATTGGAATCAGGGATTCGTCGGTTACCAGCACGGTTCCCAGCAACCGATCTACGCTGGGCAGGTAAATGATATCGGTTTTCGC</canonical>
            <polymorphic>AATTGGGCGGAGCTTGCCTCGTGTTTTTTGGGATAGTCTTTATTCATGTCATTTGGATAGTTTCCTCGCTTTTAGAGCCTTTTCTCCATTTTTTAGAATTATTTTTTTCTGTTTTTGCAGAAGCCAATCGGATAAGGCAAGTTGTATGATGGACGCTACAAACAGTAACCCACCGCAGGTAAGCCGTTTTTTTTCCTAATATTATCTTTCCAGTTTGTTTCAGGTGGTAGCCATTCAAAAAAAATTCACCTGGACCACGGCTCAGAGAACCCGCCTTAGTGATGTTTATCAAACTTCTGCGTTCATCACTCAAAAAATGATCGATGAATTGGCAGCTGAACTGGGCGTGGAGAAAACGAAGGTATAAATAACACAACTCTGAACAAGTAACAAATAAATCGTTTCAGGTTGAGCTGTACTTCAACGGAAAACGCTGGTACGAGACAAAAAAAGTAAGTATGCTTCTTTTTTCAAATGAATATGCCAGTATTTAGGCCAAKAAAGAACGCATGAGAAAGATCGCACGGGACCTTCCTGCAACTCAAGCTACAAATGTTGTCATCCCAGCTATCCCAGCGATGCCAATGGGAACGGCAAACAACGGACCACCGGTTAGTTCATTAAAGAAAAAGCTTACGATGAAAACGGTAAGTTTTCAGATTGCCGTTCATCCGGCGTTGGATGTTCCACACCATGGAACTCCGATTAACTGGGGGAACTATCAATGGGGTACCCCAGCTGCAATGCCAATGCAAAACCAGGTGAATATATTACCAACTGAGAACTTGGAAGACTAAATGGGTTTCAGCCAATGCTCGGCTTCGATCCACTTGGTTATGGTCACGCTCATGTTGGACTCTACAATGCCAACTACGCCAATGCTCCAGCATTTGCACCACCAGCTCAAAATGCCATGAATTGGAATCAGGGATTCGTCGGTTACCAGCACGGTTCCCAGCAACCGATCTACGCTGGGCAGGTAAATGATATCGGTTTTCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAACTCTGAACAAGTAACAAA</pcr_primer_p1>
		<pcr_primer_p2>TAATGAACTAACCGGTGGTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CACAACTCTGAACAAGTAACAAATAAATCGTTTCAGGTTGAGCTGTACTTCAACGGAAAACGCTGGTACGAGACAAAAAAAGTAAGTATGCTTCTTTTTTCAAATGAATATGCCAGTATTTAGGCCAATAAAGAACGCATGAGAAAGATCGCACGGGACCTTCCTGCAACTCAAGCTACAAATGTTGTCATCCCAGCTATCCCAGCGATGCCAATGGGAACGGCAAACAACGGACCACCGGTTAGTTCATTA</canonical_amplicon>
		<polymorphic_amplicon>CACAACTCTGAACAAGTAACAAATAAATCGTTTCAGGTTGAGCTGTACTTCAACGGAAAACGCTGGTACGAGACAAAAAAAGTAAGTATGCTTCTTTTTTCAAATGAATATGCCAGTATTTAGGCCAAKAAAGAACGCATGAGAAAGATCGCACGGGACCTTCCTGCAACTCAAGCTACAAATGTTGTCATCCCAGCTATCCCAGCGATGCCAATGGGAACGGCAAACAACGGACCACCGGTTAGTTCATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21350</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>561265</contig_pos>
        <strand>+</strand>
        <context>TCCCAGCTAT[C/T]CCAGCGATGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCACGGGACCTTCCTGCAACTCAAGCTACAAATGTTGTCATCCCAGCTAT</left_flank>
        <right_flank>CCAGCGATGCCAATGGGAACGGCAAACAACGGACCACCGGTTAGTTCATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAGCCTTTTCTCCATTTTTTAGAATTATTTTTTTCTGTTTTTGCAGAAGCCAATCGGATAAGGCAAGTTGTATGATGGACGCTACAAACAGTAACCCACCGCAGGTAAGCCGTTTTTTTTCCTAATATTATCTTTCCAGTTTGTTTCAGGTGGTAGCCATTCAAAAAAAATTCACCTGGACCACGGCTCAGAGAACCCGCCTTAGTGATGTTTATCAAACTTCTGCGTTCATCACTCAAAAAATGATCGATGAATTGGCAGCTGAACTGGGCGTGGAGAAAACGAAGGTATAAATAACACAACTCTGAACAAGTAACAAATAAATCGTTTCAGGTTGAGCTGTACTTCAACGGAAAACGCTGGTACGAGACAAAAAAAGTAAGTATGCTTCTTTTTTCAAATGAATATGCCAGTATTTAGGCCAATAAAGAACGCATGAGAAAGATCGCACGGGACCTTCCTGCAACTCAAGCTACAAATGTTGTCATCCCAGCTATCCCAGCGATGCCAATGGGAACGGCAAACAACGGACCACCGGTTAGTTCATTAAAGAAAAAGCTTACGATGAAAACGGTAAGTTTTCAGATTGCCGTTCATCCGGCGTTGGATGTTCCACACCATGGAACTCCGATTAACTGGGGGAACTATCAATGGGGTACCCCAGCTGCAATGCCAATGCAAAACCAGGTGAATATATTACCAACTGAGAACTTGGAAGACTAAATGGGTTTCAGCCAATGCTCGGCTTCGATCCACTTGGTTATGGTCACGCTCATGTTGGACTCTACAATGCCAACTACGCCAATGCTCCAGCATTTGCACCACCAGCTCAAAATGCCATGAATTGGAATCAGGGATTCGTCGGTTACCAGCACGGTTCCCAGCAACCGATCTACGCTGGGCAGGTAAATGATATCGGTTTTCGCTGGGTTCTAACACATTCTCTGAGAGAATTGAGATCGGGTCAATAGGCGATGGCAATGGCAAAATTCGAAATG</canonical>
            <polymorphic>TAGAGCCTTTTCTCCATTTTTTAGAATTATTTTTTTCTGTTTTTGCAGAAGCCAATCGGATAAGGCAAGTTGTATGATGGACGCTACAAACAGTAACCCACCGCAGGTAAGCCGTTTTTTTTCCTAATATTATCTTTCCAGTTTGTTTCAGGTGGTAGCCATTCAAAAAAAATTCACCTGGACCACGGCTCAGAGAACCCGCCTTAGTGATGTTTATCAAACTTCTGCGTTCATCACTCAAAAAATGATCGATGAATTGGCAGCTGAACTGGGCGTGGAGAAAACGAAGGTATAAATAACACAACTCTGAACAAGTAACAAATAAATCGTTTCAGGTTGAGCTGTACTTCAACGGAAAACGCTGGTACGAGACAAAAAAAGTAAGTATGCTTCTTTTTTCAAATGAATATGCCAGTATTTAGGCCAATAAAGAACGCATGAGAAAGATCGCACGGGACCTTCCTGCAACTCAAGCTACAAATGTTGTCATCCCAGCTATYCCAGCGATGCCAATGGGAACGGCAAACAACGGACCACCGGTTAGTTCATTAAAGAAAAAGCTTACGATGAAAACGGTAAGTTTTCAGATTGCCGTTCATCCGGCGTTGGATGTTCCACACCATGGAACTCCGATTAACTGGGGGAACTATCAATGGGGTACCCCAGCTGCAATGCCAATGCAAAACCAGGTGAATATATTACCAACTGAGAACTTGGAAGACTAAATGGGTTTCAGCCAATGCTCGGCTTCGATCCACTTGGTTATGGTCACGCTCATGTTGGACTCTACAATGCCAACTACGCCAATGCTCCAGCATTTGCACCACCAGCTCAAAATGCCATGAATTGGAATCAGGGATTCGTCGGTTACCAGCACGGTTCCCAGCAACCGATCTACGCTGGGCAGGTAAATGATATCGGTTTTCGCTGGGTTCTAACACATTCTCTGAGAGAATTGAGATCGGGTCAATAGGCGATGGCAATGGCAAAATTCGAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGAATATGCCAGTATTTAGG</pcr_primer_p1>
		<pcr_primer_p2>TGATAGTTCCCCCAGTTAATC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAATGAATATGCCAGTATTTAGGCCAATAAAGAACGCATGAGAAAGATCGCACGGGACCTTCCTGCAACTCAAGCTACAAATGTTGTCATCCCAGCTATCCCAGCGATGCCAATGGGAACGGCAAACAACGGACCACCGGTTAGTTCATTAAAGAAAAAGCTTACGATGAAAACGGTAAGTTTTCAGATTGCCGTTCATCCGGCGTTGGATGTTCCACACCATGGAACTCCGATTAACTGGGGGAACTATCA</canonical_amplicon>
		<polymorphic_amplicon>AAATGAATATGCCAGTATTTAGGCCAATAAAGAACGCATGAGAAAGATCGCACGGGACCTTCCTGCAACTCAAGCTACAAATGTTGTCATCCCAGCTATYCCAGCGATGCCAATGGGAACGGCAAACAACGGACCACCGGTTAGTTCATTAAAGAAAAAGCTTACGATGAAAACGGTAAGTTTTCAGATTGCCGTTCATCCGGCGTTGGATGTTCCACACCATGGAACTCCGATTAACTGGGGGAACTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21351</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>561317</contig_pos>
        <strand>+</strand>
        <context>TAGTTCATTA[A/C]AGAAAAAGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAGCGATGCCAATGGGAACGGCAAACAACGGACCACCGGTTAGTTCATTA</left_flank>
        <right_flank>AGAAAAAGCTTACGATGAAAACGGTAAGTTTTCAGATTGCCGTTCATCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATCGGATAAGGCAAGTTGTATGATGGACGCTACAAACAGTAACCCACCGCAGGTAAGCCGTTTTTTTTCCTAATATTATCTTTCCAGTTTGTTTCAGGTGGTAGCCATTCAAAAAAAATTCACCTGGACCACGGCTCAGAGAACCCGCCTTAGTGATGTTTATCAAACTTCTGCGTTCATCACTCAAAAAATGATCGATGAATTGGCAGCTGAACTGGGCGTGGAGAAAACGAAGGTATAAATAACACAACTCTGAACAAGTAACAAATAAATCGTTTCAGGTTGAGCTGTACTTCAACGGAAAACGCTGGTACGAGACAAAAAAAGTAAGTATGCTTCTTTTTTCAAATGAATATGCCAGTATTTAGGCCAATAAAGAACGCATGAGAAAGATCGCACGGGACCTTCCTGCAACTCAAGCTACAAATGTTGTCATCCCAGCTATCCCAGCGATGCCAATGGGAACGGCAAACAACGGACCACCGGTTAGTTCATTAAAGAAAAAGCTTACGATGAAAACGGTAAGTTTTCAGATTGCCGTTCATCCGGCGTTGGATGTTCCACACCATGGAACTCCGATTAACTGGGGGAACTATCAATGGGGTACCCCAGCTGCAATGCCAATGCAAAACCAGGTGAATATATTACCAACTGAGAACTTGGAAGACTAAATGGGTTTCAGCCAATGCTCGGCTTCGATCCACTTGGTTATGGTCACGCTCATGTTGGACTCTACAATGCCAACTACGCCAATGCTCCAGCATTTGCACCACCAGCTCAAAATGCCATGAATTGGAATCAGGGATTCGTCGGTTACCAGCACGGTTCCCAGCAACCGATCTACGCTGGGCAGGTAAATGATATCGGTTTTCGCTGGGTTCTAACACATTCTCTGAGAGAATTGAGATCGGGTCAATAGGCGATGGCAATGGCAAAATTCGAAATGGTCGTAGAAGTCTGAAATTGTATGTGGTGAGTATATGGGCTACTCTAAGACT</canonical>
            <polymorphic>CAATCGGATAAGGCAAGTTGTATGATGGACGCTACAAACAGTAACCCACCGCAGGTAAGCCGTTTTTTTTCCTAATATTATCTTTCCAGTTTGTTTCAGGTGGTAGCCATTCAAAAAAAATTCACCTGGACCACGGCTCAGAGAACCCGCCTTAGTGATGTTTATCAAACTTCTGCGTTCATCACTCAAAAAATGATCGATGAATTGGCAGCTGAACTGGGCGTGGAGAAAACGAAGGTATAAATAACACAACTCTGAACAAGTAACAAATAAATCGTTTCAGGTTGAGCTGTACTTCAACGGAAAACGCTGGTACGAGACAAAAAAAGTAAGTATGCTTCTTTTTTCAAATGAATATGCCAGTATTTAGGCCAATAAAGAACGCATGAGAAAGATCGCACGGGACCTTCCTGCAACTCAAGCTACAAATGTTGTCATCCCAGCTATCCCAGCGATGCCAATGGGAACGGCAAACAACGGACCACCGGTTAGTTCATTAMAGAAAAAGCTTACGATGAAAACGGTAAGTTTTCAGATTGCCGTTCATCCGGCGTTGGATGTTCCACACCATGGAACTCCGATTAACTGGGGGAACTATCAATGGGGTACCCCAGCTGCAATGCCAATGCAAAACCAGGTGAATATATTACCAACTGAGAACTTGGAAGACTAAATGGGTTTCAGCCAATGCTCGGCTTCGATCCACTTGGTTATGGTCACGCTCATGTTGGACTCTACAATGCCAACTACGCCAATGCTCCAGCATTTGCACCACCAGCTCAAAATGCCATGAATTGGAATCAGGGATTCGTCGGTTACCAGCACGGTTCCCAGCAACCGATCTACGCTGGGCAGGTAAATGATATCGGTTTTCGCTGGGTTCTAACACATTCTCTGAGAGAATTGAGATCGGGTCAATAGGCGATGGCAATGGCAAAATTCGAAATGGTCGTAGAAGTCTGAAATTGTATGTGGTGAGTATATGGGCTACTCTAAGACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>497 418 85</canonical_bands>
                <polymorphic_bands>582 418</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCAAGCTACAAATGTTGTCAT</pcr_primer_p1>
		<pcr_primer_p2>TTCCAAGTTCTCAGTTGGTAATA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACTCAAGCTACAAATGTTGTCATCCCAGCTATCCCAGCGATGCCAATGGGAACGGCAAACAACGGACCACCGGTTAGTTCATTAAAGAAAAAGCTTACGATGAAAACGGTAAGTTTTCAGATTGCCGTTCATCCGGCGTTGGATGTTCCACACCATGGAACTCCGATTAACTGGGGGAACTATCAATGGGGTACCCCAGCTGCAATGCCAATGCAAAACCAGGTGAATATATTACCAACTGAGAACTTGGAA</canonical_amplicon>
		<polymorphic_amplicon>ACTCAAGCTACAAATGTTGTCATCCCAGCTATCCCAGCGATGCCAATGGGAACGGCAAACAACGGACCACCGGTTAGTTCATTAMAGAAAAAGCTTACGATGAAAACGGTAAGTTTTCAGATTGCCGTTCATCCGGCGTTGGATGTTCCACACCATGGAACTCCGATTAACTGGGGGAACTATCAATGGGGTACCCCAGCTGCAATGCCAATGCAAAACCAGGTGAATATATTACCAACTGAGAACTTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21352</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>561339</contig_pos>
        <strand>+</strand>
        <context>ACGATGAAAA[C/T]GGKAAGTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACAACGGACCACCGGTTAGTTCATTAAAGAAAAAGCTTACGATGAAAA</left_flank>
        <right_flank>GGTAAGTTTTCAGATTGCCGTTCATCCGGCGTTGGATGTTCCACACCATG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATGGACGCTACAAACAGTAACCCACCGCAGGTAAGCCGTTTTTTTTCCTAATATTATCTTTCCAGTTTGTTTCAGGTGGTAGCCATTCAAAAAAAATTCACCTGGACCACGGCTCAGAGAACCCGCCTTAGTGATGTTTATCAAACTTCTGCGTTCATCACTCAAAAAATGATCGATGAATTGGCAGCTGAACTGGGCGTGGAGAAAACGAAGGTATAAATAACACAACTCTGAACAAGTAACAAATAAATCGTTTCAGGTTGAGCTGTACTTCAACGGAAAACGCTGGTACGAGACAAAAAAAGTAAGTATGCTTCTTTTTTCAAATGAATATGCCAGTATTTAGGCCAATAAAGAACGCATGAGAAAGATCGCACGGGACCTTCCTGCAACTCAAGCTACAAATGTTGTCATCCCAGCTATCCCAGCGATGCCAATGGGAACGGCAAACAACGGACCACCGGTTAGTTCATTAAAGAAAAAGCTTACGATGAAAACGGTAAGTTTTCAGATTGCCGTTCATCCGGCGTTGGATGTTCCACACCATGGAACTCCGATTAACTGGGGGAACTATCAATGGGGTACCCCAGCTGCAATGCCAATGCAAAACCAGGTGAATATATTACCAACTGAGAACTTGGAAGACTAAATGGGTTTCAGCCAATGCTCGGCTTCGATCCACTTGGTTATGGTCACGCTCATGTTGGACTCTACAATGCCAACTACGCCAATGCTCCAGCATTTGCACCACCAGCTCAAAATGCCATGAATTGGAATCAGGGATTCGTCGGTTACCAGCACGGTTCCCAGCAACCGATCTACGCTGGGCAGGTAAATGATATCGGTTTTCGCTGGGTTCTAACACATTCTCTGAGAGAATTGAGATCGGGTCAATAGGCGATGGCAATGGCAAAATTCGAAATGGTCGTAGAAGTCTGAAATTGTATGTGGTGAGTATATGGGCTACTCTAAGACTTTTGACCATGGTACCCATAAGC</canonical>
            <polymorphic>TGATGGACGCTACAAACAGTAACCCACCGCAGGTAAGCCGTTTTTTTTCCTAATATTATCTTTCCAGTTTGTTTCAGGTGGTAGCCATTCAAAAAAAATTCACCTGGACCACGGCTCAGAGAACCCGCCTTAGTGATGTTTATCAAACTTCTGCGTTCATCACTCAAAAAATGATCGATGAATTGGCAGCTGAACTGGGCGTGGAGAAAACGAAGGTATAAATAACACAACTCTGAACAAGTAACAAATAAATCGTTTCAGGTTGAGCTGTACTTCAACGGAAAACGCTGGTACGAGACAAAAAAAGTAAGTATGCTTCTTTTTTCAAATGAATATGCCAGTATTTAGGCCAATAAAGAACGCATGAGAAAGATCGCACGGGACCTTCCTGCAACTCAAGCTACAAATGTTGTCATCCCAGCTATCCCAGCGATGCCAATGGGAACGGCAAACAACGGACCACCGGTTAGTTCATTAAAGAAAAAGCTTACGATGAAAAYGGTAAGTTTTCAGATTGCCGTTCATCCGGCGTTGGATGTTCCACACCATGGAACTCCGATTAACTGGGGGAACTATCAATGGGGTACCCCAGCTGCAATGCCAATGCAAAACCAGGTGAATATATTACCAACTGAGAACTTGGAAGACTAAATGGGTTTCAGCCAATGCTCGGCTTCGATCCACTTGGTTATGGTCACGCTCATGTTGGACTCTACAATGCCAACTACGCCAATGCTCCAGCATTTGCACCACCAGCTCAAAATGCCATGAATTGGAATCAGGGATTCGTCGGTTACCAGCACGGTTCCCAGCAACCGATCTACGCTGGGCAGGTAAATGATATCGGTTTTCGCTGGGTTCTAACACATTCTCTGAGAGAATTGAGATCGGGTCAATAGGCGATGGCAATGGCAAAATTCGAAATGGTCGTAGAAGTCTGAAATTGTATGTGGTGAGTATATGGGCTACTCTAAGACTTTTGACCATGGTACCCATAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>483 303 196 18</canonical_bands>
                <polymorphic_bands>786 196 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCAAGCTACAAATGTTGTCAT</pcr_primer_p1>
		<pcr_primer_p2>TTCCAAGTTCTCAGTTGGTAATA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACTCAAGCTACAAATGTTGTCATCCCAGCTATCCCAGCGATGCCAATGGGAACGGCAAACAACGGACCACCGGTTAGTTCATTAAAGAAAAAGCTTACGATGAAAACGGTAAGTTTTCAGATTGCCGTTCATCCGGCGTTGGATGTTCCACACCATGGAACTCCGATTAACTGGGGGAACTATCAATGGGGTACCCCAGCTGCAATGCCAATGCAAAACCAGGTGAATATATTACCAACTGAGAACTTGGAA</canonical_amplicon>
		<polymorphic_amplicon>ACTCAAGCTACAAATGTTGTCATCCCAGCTATCCCAGCGATGCCAATGGGAACGGCAAACAACGGACCACCGGTTAGTTCATTAAAGAAAAAGCTTACGATGAAAAYGGTAAGTTTTCAGATTGCCGTTCATCCGGCGTTGGATGTTCCACACCATGGAACTCCGATTAACTGGGGGAACTATCAATGGGGTACCCCAGCTGCAATGCCAATGCAAAACCAGGTGAATATATTACCAACTGAGAACTTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21353</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>561342</contig_pos>
        <strand>+</strand>
        <context>ATGAAAAYGG[G/T]AAGTTTTCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAACGGACCACCGGTTAGTTCATTAAAGAAAAAGCTTACGATGAAAACGG</left_flank>
        <right_flank>AAGTTTTCAGATTGCCGTTCATCCGGCGTTGGATGTTCCACACCATGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGACGCTACAAACAGTAACCCACCGCAGGTAAGCCGTTTTTTTTCCTAATATTATCTTTCCAGTTTGTTTCAGGTGGTAGCCATTCAAAAAAAATTCACCTGGACCACGGCTCAGAGAACCCGCCTTAGTGATGTTTATCAAACTTCTGCGTTCATCACTCAAAAAATGATCGATGAATTGGCAGCTGAACTGGGCGTGGAGAAAACGAAGGTATAAATAACACAACTCTGAACAAGTAACAAATAAATCGTTTCAGGTTGAGCTGTACTTCAACGGAAAACGCTGGTACGAGACAAAAAAAGTAAGTATGCTTCTTTTTTCAAATGAATATGCCAGTATTTAGGCCAATAAAGAACGCATGAGAAAGATCGCACGGGACCTTCCTGCAACTCAAGCTACAAATGTTGTCATCCCAGCTATCCCAGCGATGCCAATGGGAACGGCAAACAACGGACCACCGGTTAGTTCATTAAAGAAAAAGCTTACGATGAAAACGGTAAGTTTTCAGATTGCCGTTCATCCGGCGTTGGATGTTCCACACCATGGAACTCCGATTAACTGGGGGAACTATCAATGGGGTACCCCAGCTGCAATGCCAATGCAAAACCAGGTGAATATATTACCAACTGAGAACTTGGAAGACTAAATGGGTTTCAGCCAATGCTCGGCTTCGATCCACTTGGTTATGGTCACGCTCATGTTGGACTCTACAATGCCAACTACGCCAATGCTCCAGCATTTGCACCACCAGCTCAAAATGCCATGAATTGGAATCAGGGATTCGTCGGTTACCAGCACGGTTCCCAGCAACCGATCTACGCTGGGCAGGTAAATGATATCGGTTTTCGCTGGGTTCTAACACATTCTCTGAGAGAATTGAGATCGGGTCAATAGGCGATGGCAATGGCAAAATTCGAAATGGTCGTAGAAGTCTGAAATTGTATGTGGTGAGTATATGGGCTACTCTAAGACTTTTGACCATGGTACCCATAAGCCAC</canonical>
            <polymorphic>TGGACGCTACAAACAGTAACCCACCGCAGGTAAGCCGTTTTTTTTCCTAATATTATCTTTCCAGTTTGTTTCAGGTGGTAGCCATTCAAAAAAAATTCACCTGGACCACGGCTCAGAGAACCCGCCTTAGTGATGTTTATCAAACTTCTGCGTTCATCACTCAAAAAATGATCGATGAATTGGCAGCTGAACTGGGCGTGGAGAAAACGAAGGTATAAATAACACAACTCTGAACAAGTAACAAATAAATCGTTTCAGGTTGAGCTGTACTTCAACGGAAAACGCTGGTACGAGACAAAAAAAGTAAGTATGCTTCTTTTTTCAAATGAATATGCCAGTATTTAGGCCAATAAAGAACGCATGAGAAAGATCGCACGGGACCTTCCTGCAACTCAAGCTACAAATGTTGTCATCCCAGCTATCCCAGCGATGCCAATGGGAACGGCAAACAACGGACCACCGGTTAGTTCATTAAAGAAAAAGCTTACGATGAAAACGGKAAGTTTTCAGATTGCCGTTCATCCGGCGTTGGATGTTCCACACCATGGAACTCCGATTAACTGGGGGAACTATCAATGGGGTACCCCAGCTGCAATGCCAATGCAAAACCAGGTGAATATATTACCAACTGAGAACTTGGAAGACTAAATGGGTTTCAGCCAATGCTCGGCTTCGATCCACTTGGTTATGGTCACGCTCATGTTGGACTCTACAATGCCAACTACGCCAATGCTCCAGCATTTGCACCACCAGCTCAAAATGCCATGAATTGGAATCAGGGATTCGTCGGTTACCAGCACGGTTCCCAGCAACCGATCTACGCTGGGCAGGTAAATGATATCGGTTTTCGCTGGGTTCTAACACATTCTCTGAGAGAATTGAGATCGGGTCAATAGGCGATGGCAATGGCAAAATTCGAAATGGTCGTAGAAGTCTGAAATTGTATGTGGTGAGTATATGGGCTACTCTAAGACTTTTGACCATGGTACCCATAAGCCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>483 303 199 15</canonical_bands>
                <polymorphic_bands>786 199 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCAAGCTACAAATGTTGTCAT</pcr_primer_p1>
		<pcr_primer_p2>TTCCAAGTTCTCAGTTGGTAATA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACTCAAGCTACAAATGTTGTCATCCCAGCTATCCCAGCGATGCCAATGGGAACGGCAAACAACGGACCACCGGTTAGTTCATTAAAGAAAAAGCTTACGATGAAAACGGTAAGTTTTCAGATTGCCGTTCATCCGGCGTTGGATGTTCCACACCATGGAACTCCGATTAACTGGGGGAACTATCAATGGGGTACCCCAGCTGCAATGCCAATGCAAAACCAGGTGAATATATTACCAACTGAGAACTTGGAA</canonical_amplicon>
		<polymorphic_amplicon>ACTCAAGCTACAAATGTTGTCATCCCAGCTATCCCAGCGATGCCAATGGGAACGGCAAACAACGGACCACCGGTTAGTTCATTAAAGAAAAAGCTTACGATGAAAACGGKAAGTTTTCAGATTGCCGTTCATCCGGCGTTGGATGTTCCACACCATGGAACTCCGATTAACTGGGGGAACTATCAATGGGGTACCCCAGCTGCAATGCCAATGCAAAACCAGGTGAATATATTACCAACTGAGAACTTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21356</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>561392</contig_pos>
        <strand>+</strand>
        <context>ACACCATGGA[A/G]CTCCGATTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAGTTTTCAGATTGCCGTTCATCCGGCGTTGGATGTTCCACACCATGGA</left_flank>
        <right_flank>CTCCGATTAACTGGGGGAACTATCAATGGGGTACCCCAGCTGCAATGCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTATCTTTCCAGTTTGTTTCAGGTGGTAGCCATTCAAAAAAAATTCACCTGGACCACGGCTCAGAGAACCCGCCTTAGTGATGTTTATCAAACTTCTGCGTTCATCACTCAAAAAATGATCGATGAATTGGCAGCTGAACTGGGCGTGGAGAAAACGAAGGTATAAATAACACAACTCTGAACAAGTAACAAATAAATCGTTTCAGGTTGAGCTGTACTTCAACGGAAAACGCTGGTACGAGACAAAAAAAGTAAGTATGCTTCTTTTTTCAAATGAATATGCCAGTATTTAGGCCAATAAAGAACGCATGAGAAAGATCGCACGGGACCTTCCTGCAACTCAAGCTACAAATGTTGTCATCCCAGCTATCCCAGCGATGCCAATGGGAACGGCAAACAACGGACCACCGGTTAGTTCATTAAAGAAAAAGCTTACGATGAAAACGGTAAGTTTTCAGATTGCCGTTCATCCGGCGTTGGATGTTCCACACCATGGAACTCCGATTAACTGGGGGAACTATCAATGGGGTACCCCAGCTGCAATGCCAATGCAAAACCAGGTGAATATATTACCAACTGAGAACTTGGAAGACTAAATGGGTTTCAGCCAATGCTCGGCTTCGATCCACTTGGTTATGGTCACGCTCATGTTGGACTCTACAATGCCAACTACGCCAATGCTCCAGCATTTGCACCACCAGCTCAAAATGCCATGAATTGGAATCAGGGATTCGTCGGTTACCAGCACGGTTCCCAGCAACCGATCTACGCTGGGCAGGTAAATGATATCGGTTTTCGCTGGGTTCTAACACATTCTCTGAGAGAATTGAGATCGGGTCAATAGGCGATGGCAATGGCAAAATTCGAAATGGTCGTAGAAGTCTGAAATTGTATGTGGTGAGTATATGGGCTACTCTAAGACTTTTGACCATGGTACCCATAAGCCACGCCCTCTCCTACAGTAACCCTGAAGTAGAGAAAATTTCACTGTCATAATT</canonical>
            <polymorphic>TATTATCTTTCCAGTTTGTTTCAGGTGGTAGCCATTCAAAAAAAATTCACCTGGACCACGGCTCAGAGAACCCGCCTTAGTGATGTTTATCAAACTTCTGCGTTCATCACTCAAAAAATGATCGATGAATTGGCAGCTGAACTGGGCGTGGAGAAAACGAAGGTATAAATAACACAACTCTGAACAAGTAACAAATAAATCGTTTCAGGTTGAGCTGTACTTCAACGGAAAACGCTGGTACGAGACAAAAAAAGTAAGTATGCTTCTTTTTTCAAATGAATATGCCAGTATTTAGGCCAATAAAGAACGCATGAGAAAGATCGCACGGGACCTTCCTGCAACTCAAGCTACAAATGTTGTCATCCCAGCTATCCCAGCGATGCCAATGGGAACGGCAAACAACGGACCACCGGTTAGTTCATTAAAGAAAAAGCTTACGATGAAAACGGTAAGTTTTCAGATTGCCGTTCATCCGGCGTTGGATGTTCCACACCATGGARCTCCGATTAACTGGGGGAACTATCAATGGGGTACCCCAGCTGCAATGCCAATGCAAAACCAGGTGAATATATTACCAACTGAGAACTTGGAAGACTAAATGGGTTTCAGCCAATGCTCGGCTTCGATCCACTTGGTTATGGTCACGCTCATGTTGGACTCTACAATGCCAACTACGCCAATGCTCCAGCATTTGCACCACCAGCTCAAAATGCCATGAATTGGAATCAGGGATTCGTCGGTTACCAGCACGGTTCCCAGCAACCGATCTACGCTGGGCAGGTAAATGATATCGGTTTTCGCTGGGTTCTAACACATTCTCTGAGAGAATTGAGATCGGGTCAATAGGCGATGGCAATGGCAAAATTCGAAATGGTCGTAGAAGTCTGAAATTGTATGTGGTGAGTATATGGGCTACTCTAAGACTTTTGACCATGGTACCCATAAGCCACGCCCTCTCCTACAGTAACCCTGAAGTAGAGAAAATTTCACTGTCATAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCAAGCTACAAATGTTGTCAT</pcr_primer_p1>
		<pcr_primer_p2>TTCCAAGTTCTCAGTTGGTAATA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACTCAAGCTACAAATGTTGTCATCCCAGCTATCCCAGCGATGCCAATGGGAACGGCAAACAACGGACCACCGGTTAGTTCATTAAAGAAAAAGCTTACGATGAAAACGGTAAGTTTTCAGATTGCCGTTCATCCGGCGTTGGATGTTCCACACCATGGAACTCCGATTAACTGGGGGAACTATCAATGGGGTACCCCAGCTGCAATGCCAATGCAAAACCAGGTGAATATATTACCAACTGAGAACTTGGAA</canonical_amplicon>
		<polymorphic_amplicon>ACTCAAGCTACAAATGTTGTCATCCCAGCTATCCCAGCGATGCCAATGGGAACGGCAAACAACGGACCACCGGTTAGTTCATTAAAGAAAAAGCTTACGATGAAAACGGTAAGTTTTCAGATTGCCGTTCATCCGGCGTTGGATGTTCCACACCATGGARCTCCGATTAACTGGGGGAACTATCAATGGGGTACCCCAGCTGCAATGCCAATGCAAAACCAGGTGAATATATTACCAACTGAGAACTTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21368</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>579071</contig_pos>
        <strand>+</strand>
        <context>TTTTCAGAAA[G/T]ACSCATCTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAAGTTTAACCACCTGTTGTTGCACTTTTTCGAGAGACCTTTTCAGAAA</left_flank>
        <right_flank>ACCCATCTATTAACGACCCTCTTTTTTAGTACCATTTTTGAATAAGAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTCCAAATTAAGAAAAAAAAATAGAGTCCGAAATGGCTGTGTCTAAAGTATCAACCTGATCCAGAGATATACATGTTTTAATTCCTACCAGACTTGCCAGAAAGTGGAATTTTTATGCTCAAAAGTCGGAATCCTTGACACCACTGATCTTGACGAGCTGATTCTAATGTTTCAGTAAATGAATTTCTTACGTTTTCTTCCTGTCAGAGAGAATAATGTCTATCAAATTTCGTGTTTTTCAACTAGATTTCAAACATTTGCATTTTTTCATTTCAAAACGAAGATTCCAATACTTTCATAATCAGCTTTTCTCAATATTTCCCCACATTTTTTCTAGTTTCAAAATAGAAACTGTAAGACTCAAGTTGAAACCATTCTCATGGCATTAGAATACCATAGAATCTATGTCCCGAATCCCATCATTTTAATTGCGAAATTGCTCATTTTTGAAGTTTAACCACCTGTTGTTGCACTTTTTCGAGAGACCTTTTCAGAAATACCCATCTATTAACGACCCTCTTTTTTAGTACCATTTTTGAATAAGAGAAAACGAGTAATATGTAGACGCAGAGCGGCGCAGGTGCGGATTCATAATGTCATCACCTGTTAATAGTGCATTGTTTCGAAGACCCCGGGGTCGAAATATGGGCGGGATCTACAGTAAGAGCAATAAGTGGGCGTGGCCTACAGAAAAATCGAGAATAAAAGTCGCGTGATTTATCAAAAATCGTACATTCTCCTTCTTCCTCATCCCCAGCTGACCACTCCGAGCACTCTGTGAGCACCGACTGGTACACCATATTGGTGGCACCTGTTGGTAGTTCTTGTGGAGGTCTTGTGTTCAGCTCATCAGAAAGTCTGCCTCTGTCTTTCTTCATCAAACATGCATTCCGTTCTCTATCGGAATTGTTTATTTGAGTCTCCCATTTTTTCCCCAGTTGTCATCAATCAGCATGATCTACAAAAACCATTTAGAACAGTCGAAAAAACAAGACTGC</canonical>
            <polymorphic>AACTCCAAATTAAGAAAAAAAAATAGAGTCCGAAATGGCTGTGTCTAAAGTATCAACCTGATCCAGAGATATACATGTTTTAATTCCTACCAGACTTGCCAGAAAGTGGAATTTTTATGCTCAAAAGTCGGAATCCTTGACACCACTGATCTTGACGAGCTGATTCTAATGTTTCAGTAAATGAATTTCTTACGTTTTCTTCCTGTCAGAGAGAATAATGTCTATCAAATTTCGTGTTTTTCAACTAGATTTCAAACATTTGCATTTTTTCATTTCAAAACGAAGATTCCAATACTTTCATAATCAGCTTTTCTCAATATTTCCCCACATTTTTTCTAGTTTCAAAATAGAAACTGTAAGACTCAAGTTGAAACCATTCTCATGGCATTAGAATACCATAGAATCTATGTCCCGAATCCCATCATTTTAATTGCGAAATTGCTCATTTTTGAAGTTTAACCACCTGTTGTTGCACTTTTTCGAGAGACCTTTTCAGAAAKACCCATCTATTAACGACCCTCTTTTTTAGTACCATTTTTGAATAAGAGAAAACGAGTAATATGTAGACGCAGAGCGGCGCAGGTGCGGATTCATAATGTCATCACCTGTTAATAGTGCATTGTTTCGAAGACCCCGGGGTCGAAATATGGGCGGGATCTACAGTAAGAGCAATAAGTGGGCGTGGCCTACAGAAAAATCGAGAATAAAAGTCGCGTGATTTATCAAAAATCGTACATTCTCCTTCTTCCTCATCCCCAGCTGACCACTCCGAGCACTCTGTGAGCACCGACTGGTACACCATATTGGTGGCACCTGTTGGTAGTTCTTGTGGAGGTCTTGTGTTCAGCTCATCAGAAAGTCTGCCTCTGTCTTTCTTCATCAAACATGCATTCCGTTCTCTATCGGAATTGTTTATTTGAGTCTCCCATTTTTTCCCCAGTTGTCATCAATCAGCATGATCTACAAAAACCATTTAGAACAGTCGAAAAAACAAGACTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGCATTAGAATACCATAGAATC</pcr_primer_p1>
		<pcr_primer_p2>CTTCGAAACAATGCACTATTAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGGCATTAGAATACCATAGAATCTATGTCCCGAATCCCATCATTTTAATTGCGAAATTGCTCATTTTTGAAGTTTAACCACCTGTTGTTGCACTTTTTCGAGAGACCTTTTCAGAAATACCCATCTATTAACGACCCTCTTTTTTAGTACCATTTTTGAATAAGAGAAAACGAGTAATATGTAGACGCAGAGCGGCGCAGGTGCGGATTCATAATGTCATCACCTGTTAATAGTGCATTGTTTCGAAG</canonical_amplicon>
		<polymorphic_amplicon>TGGCATTAGAATACCATAGAATCTATGTCCCGAATCCCATCATTTTAATTGCGAAATTGCTCATTTTTGAAGTTTAACCACCTGTTGTTGCACTTTTTCGAGAGACCTTTTCAGAAAKACCCATCTATTAACGACCCTCTTTTTTAGTACCATTTTTGAATAAGAGAAAACGAGTAATATGTAGACGCAGAGCGGCGCAGGTGCGGATTCATAATGTCATCACCTGTTAATAGTGCATTGTTTCGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21369</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>579282</contig_pos>
        <strand>+</strand>
        <context>AGAATAAAAG[C/T]CGCGTGATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGTAAGAGCAATAAGTGGGCGTGGCCTACAGAAAAATCGAGAATAAAAG</left_flank>
        <right_flank>CGCGTGATTTATCAAAAATCGTACATTCTCCTTCTTCCTCATCCCCAGCT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATAATGTCTATCAAATTTCGTGTTTTTCAACTAGATTTCAAACATTTGCATTTTTTCATTTCAAAACGAAGATTCCAATACTTTCATAATCAGCTTTTCTCAATATTTCCCCACATTTTTTCTAGTTTCAAAATAGAAACTGTAAGACTCAAGTTGAAACCATTCTCATGGCATTAGAATACCATAGAATCTATGTCCCGAATCCCATCATTTTAATTGCGAAATTGCTCATTTTTGAAGTTTAACCACCTGTTGTTGCACTTTTTCGAGAGACCTTTTCAGAAATACCCATCTATTAACGACCCTCTTTTTTAGTACCATTTTTGAATAAGAGAAAACGAGTAATATGTAGACGCAGAGCGGCGCAGGTGCGGATTCATAATGTCATCACCTGTTAATAGTGCATTGTTTCGAAGACCCCGGGGTCGAAATATGGGCGGGATCTACAGTAAGAGCAATAAGTGGGCGTGGCCTACAGAAAAATCGAGAATAAAAGTCGCGTGATTTATCAAAAATCGTACATTCTCCTTCTTCCTCATCCCCAGCTGACCACTCCGAGCACTCTGTGAGCACCGACTGGTACACCATATTGGTGGCACCTGTTGGTAGTTCTTGTGGAGGTCTTGTGTTCAGCTCATCAGAAAGTCTGCCTCTGTCTTTCTTCATCAAACATGCATTCCGTTCTCTATCGGAATTGTTTATTTGAGTCTCCCATTTTTTCCCCAGTTGTCATCAATCAGCATGATCTACAAAAACCATTTAGAACAGTCGAAAAAACAAGACTGCATGACTCATTTTATTCTTACTTCCCCCTCTTTCTATCTGTTTCAAAAAATCCTTTTTTCTCCATCCATTTTCTTGATATTGAGGAGTCCTTAAAACAGTGTGCCATGCAGATAGTCTGAAAAAAAAGGCGTTGTGCTCAGAAATGATTTAGCTAATTTCGAACAGTCCCTCAAAAGTGGAGCGAGTAGAAGAACATTCTACGGAAACCAGA</canonical>
            <polymorphic>AGAATAATGTCTATCAAATTTCGTGTTTTTCAACTAGATTTCAAACATTTGCATTTTTTCATTTCAAAACGAAGATTCCAATACTTTCATAATCAGCTTTTCTCAATATTTCCCCACATTTTTTCTAGTTTCAAAATAGAAACTGTAAGACTCAAGTTGAAACCATTCTCATGGCATTAGAATACCATAGAATCTATGTCCCGAATCCCATCATTTTAATTGCGAAATTGCTCATTTTTGAAGTTTAACCACCTGTTGTTGCACTTTTTCGAGAGACCTTTTCAGAAATACCCATCTATTAACGACCCTCTTTTTTAGTACCATTTTTGAATAAGAGAAAACGAGTAATATGTAGACGCAGAGCGGCGCAGGTGCGGATTCATAATGTCATCACCTGTTAATAGTGCATTGTTTCGAAGACCCCGGGGTCGAAATATGGGCGGGATCTACAGTAAGAGCAATAAGTGGGCGTGGCCTACAGAAAAATCGAGAATAAAAGYCGCGTGATTTATCAAAAATCGTACATTCTCCTTCTTCCTCATCCCCAGCTGACCACTCCGAGCACTCTGTGAGCACCGACTGGTACACCATATTGGTGGCACCTGTTGGTAGTTCTTGTGGAGGTCTTGTGTTCAGCTCATCAGAAAGTCTGCCTCTGTCTTTCTTCATCAAACATGCATTCCGTTCTCTATCGGAATTGTTTATTTGAGTCTCCCATTTTTTCCCCAGTTGTCATCAATCAGCATGATCTACAAAAACCATTTAGAACAGTCGAAAAAACAAGACTGCATGACTCATTTTATTCTTACTTCCCCCTCTTTCTATCTGTTTCAAAAAATCCTTTTTTCTCCATCCATTTTCTTGATATTGAGGAGTCCTTAAAACAGTGTGCCATGCAGATAGTCTGAAAAAAAAGGCGTTGTGCTCAGAAATGATTTAGCTAATTTCGAACAGTCCCTCAAAAGTGGAGCGAGTAGAAGAACATTCTACGGAAACCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTGTTAATAGTGCATTGTTTC</pcr_primer_p1>
		<pcr_primer_p2>GATGAGCTGAACACAAGACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCTGTTAATAGTGCATTGTTTCGAAGACCCCGGGGTCGAAATATGGGCGGGATCTACAGTAAGAGCAATAAGTGGGCGTGGCCTACAGAAAAATCGAGAATAAAAGTCGCGTGATTTATCAAAAATCGTACATTCTCCTTCTTCCTCATCCCCAGCTGACCACTCCGAGCACTCTGTGAGCACCGACTGGTACACCATATTGGTGGCACCTGTTGGTAGTTCTTGTGGAGGTCTTGTGTTCAGCTCATC</canonical_amplicon>
		<polymorphic_amplicon>ACCTGTTAATAGTGCATTGTTTCGAAGACCCCGGGGTCGAAATATGGGCGGGATCTACAGTAAGAGCAATAAGTGGGCGTGGCCTACAGAAAAATCGAGAATAAAAGYCGCGTGATTTATCAAAAATCGTACATTCTCCTTCTTCCTCATCCCCAGCTGACCACTCCGAGCACTCTGTGAGCACCGACTGGTACACCATATTGGTGGCACCTGTTGGTAGTTCTTGTGGAGGTCTTGTGTTCAGCTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21370</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>579347</contig_pos>
        <strand>+</strand>
        <context>ACTCCGAGCA[A/C]TCTGTGAGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAATCGTACATTCTCCTTCTTCCTCATCCCCAGCTGACCACTCCGAGCA</left_flank>
        <right_flank>TCTGTGAGCACCGACTGGTACACCATATTGGTGGCACCTGTTGGTAGTTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACGAAGATTCCAATACTTTCATAATCAGCTTTTCTCAATATTTCCCCACATTTTTTCTAGTTTCAAAATAGAAACTGTAAGACTCAAGTTGAAACCATTCTCATGGCATTAGAATACCATAGAATCTATGTCCCGAATCCCATCATTTTAATTGCGAAATTGCTCATTTTTGAAGTTTAACCACCTGTTGTTGCACTTTTTCGAGAGACCTTTTCAGAAATACCCATCTATTAACGACCCTCTTTTTTAGTACCATTTTTGAATAAGAGAAAACGAGTAATATGTAGACGCAGAGCGGCGCAGGTGCGGATTCATAATGTCATCACCTGTTAATAGTGCATTGTTTCGAAGACCCCGGGGTCGAAATATGGGCGGGATCTACAGTAAGAGCAATAAGTGGGCGTGGCCTACAGAAAAATCGAGAATAAAAGTCGCGTGATTTATCAAAAATCGTACATTCTCCTTCTTCCTCATCCCCAGCTGACCACTCCGAGCACTCTGTGAGCACCGACTGGTACACCATATTGGTGGCACCTGTTGGTAGTTCTTGTGGAGGTCTTGTGTTCAGCTCATCAGAAAGTCTGCCTCTGTCTTTCTTCATCAAACATGCATTCCGTTCTCTATCGGAATTGTTTATTTGAGTCTCCCATTTTTTCCCCAGTTGTCATCAATCAGCATGATCTACAAAAACCATTTAGAACAGTCGAAAAAACAAGACTGCATGACTCATTTTATTCTTACTTCCCCCTCTTTCTATCTGTTTCAAAAAATCCTTTTTTCTCCATCCATTTTCTTGATATTGAGGAGTCCTTAAAACAGTGTGCCATGCAGATAGTCTGAAAAAAAAGGCGTTGTGCTCAGAAATGATTTAGCTAATTTCGAACAGTCCCTCAAAAGTGGAGCGAGTAGAAGAACATTCTACGGAAACCAGAAAAAAACGACTTGTTATAGTTTCAAGAAATTTTCGATCAATCTTAGTGTATTCTAGCAACCTCAA</canonical>
            <polymorphic>AAAACGAAGATTCCAATACTTTCATAATCAGCTTTTCTCAATATTTCCCCACATTTTTTCTAGTTTCAAAATAGAAACTGTAAGACTCAAGTTGAAACCATTCTCATGGCATTAGAATACCATAGAATCTATGTCCCGAATCCCATCATTTTAATTGCGAAATTGCTCATTTTTGAAGTTTAACCACCTGTTGTTGCACTTTTTCGAGAGACCTTTTCAGAAATACCCATCTATTAACGACCCTCTTTTTTAGTACCATTTTTGAATAAGAGAAAACGAGTAATATGTAGACGCAGAGCGGCGCAGGTGCGGATTCATAATGTCATCACCTGTTAATAGTGCATTGTTTCGAAGACCCCGGGGTCGAAATATGGGCGGGATCTACAGTAAGAGCAATAAGTGGGCGTGGCCTACAGAAAAATCGAGAATAAAAGTCGCGTGATTTATCAAAAATCGTACATTCTCCTTCTTCCTCATCCCCAGCTGACCACTCCGAGCAMTCTGTGAGCACCGACTGGTACACCATATTGGTGGCACCTGTTGGTAGTTCTTGTGGAGGTCTTGTGTTCAGCTCATCAGAAAGTCTGCCTCTGTCTTTCTTCATCAAACATGCATTCCGTTCTCTATCGGAATTGTTTATTTGAGTCTCCCATTTTTTCCCCAGTTGTCATCAATCAGCATGATCTACAAAAACCATTTAGAACAGTCGAAAAAACAAGACTGCATGACTCATTTTATTCTTACTTCCCCCTCTTTCTATCTGTTTCAAAAAATCCTTTTTTCTCCATCCATTTTCTTGATATTGAGGAGTCCTTAAAACAGTGTGCCATGCAGATAGTCTGAAAAAAAAGGCGTTGTGCTCAGAAATGATTTAGCTAATTTCGAACAGTCCCTCAAAAGTGGAGCGAGTAGAAGAACATTCTACGGAAACCAGAAAAAAACGACTTGTTATAGTTTCAAGAAATTTTCGATCAATCTTAGTGTATTCTAGCAACCTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACNNNGTG</site>
                <isoschizomers>
                    <enzyme>AdeI</enzyme>
                    <enzyme>DraIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>499 351 139 11</canonical_bands>
                <polymorphic_bands>510 351 139</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>499 351 139 11</canonical_bands>
                <polymorphic_bands>510 351 139</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>258 135 111 81 61 51 49 43 33 33 19 19 17 13 12 12 11 11 9 7 6 4 3 2</canonical_bands>
                <polymorphic_bands>258 135 111 81 61 51 49 43 33 33 19 19 17 16 13 12 12 11 11 6 4 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATCAAAAATCGTACATTCTCC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGTAGATCATGCTGATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTATCAAAAATCGTACATTCTCCTTCTTCCTCATCCCCAGCTGACCACTCCGAGCACTCTGTGAGCACCGACTGGTACACCATATTGGTGGCACCTGTTGGTAGTTCTTGTGGAGGTCTTGTGTTCAGCTCATCAGAAAGTCTGCCTCTGTCTTTCTTCATCAAACATGCATTCCGTTCTCTATCGGAATTGTTTATTTGAGTCTCCCATTTTTTCCCCAGTTGTCATCAATCAGCATGATCTACAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTATCAAAAATCGTACATTCTCCTTCTTCCTCATCCCCAGCTGACCACTCCGAGCAMTCTGTGAGCACCGACTGGTACACCATATTGGTGGCACCTGTTGGTAGTTCTTGTGGAGGTCTTGTGTTCAGCTCATCAGAAAGTCTGCCTCTGTCTTTCTTCATCAAACATGCATTCCGTTCTCTATCGGAATTGTTTATTTGAGTCTCCCATTTTTTCCCCAGTTGTCATCAATCAGCATGATCTACAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21371</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>581516</contig_pos>
        <strand>+</strand>
        <context>TGACCATTTT[C/T]AAGAAAAACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTTCTCACATCGTTCTTTCCCTCCGAAAGTTGTCTATACTGACCATTTT</left_flank>
        <right_flank>AAGAAAAACCGCCTTGGTGAAGGCCTATTTCGCGTCATCATTTGAGCGAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTCGTGGCTGTCATTGCTTTCATCGTGGTCGCCTTTGAATGCTGGAAGTTTTGCTATAGATGCGGAAAGCCGATCAATCGTCAGGTGATGCGGATGTCTCAGCTCGTCGACCATAGCATCTTGGTAAGAATGTATCTGCTAATAATCTATGAATTCTTGCGTTTTTCCAGGAAATTGACAACCCAGCGTTTGCTATCAGCCAGAACGAACAAGCTCTTACCACTGACAATGGAGAACTACCAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTCCCTCCGAAAGTTGTCTATACTGACCATTTTCAAGAAAAACCGCCTTGGTGAAGGCCTATTTCGCGTCATCATTTGAGCGAAATCGAAAGAAATGACTTCTATTCAACTTTTAGATAATTCTCAGATATCTGAATATTGTTGCCTCTTTCTAGAAATGAACGAAAACTTCTTAAAATCGTTCTCCCGAAAAAATGTTTTCTTCTCCTCGAGGACTACACGCGAAGTGGAAGAGGAAGCGCAACCACGTGACCATCCCTTCGTTTTTTGAGCGGTTTTTCAAAATATGGACGTCAGGATATTTATCGATGTTTCGTGGATTTCATGGTAAGTTTTCAATCCATTTTGATGAAAATTTTCTGAAATTCGACAAAGTTCTCATGGGTTTTATGCTGGGGTAGGAATAGTCGAACATAAACAGAACTTTGAATGATCAATGAAATATTTTTTCAGAATTCTCCAGCACGGGAGACTTTTGCTGAAATGAAGGAAATTAGATGGAAAAGAAAACAAGGATTCAGTTATCTGCTGGAC</canonical>
            <polymorphic>TTCTCGTGGCTGTCATTGCTTTCATCGTGGTCGCCTTTGAATGCTGGAAGTTTTGCTATAGATGCGGAAAGCCGATCAATCGTCAGGTGATGCGGATGTCTCAGCTCGTCGACCATAGCATCTTGGTAAGAATGTATCTGCTAATAATCTATGAATTCTTGCGTTTTTCCAGGAAATTGACAACCCAGCGTTTGCTATCAGCCAGAACGAACAAGCTCTTACCACTGACAATGGAGAACTACCAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTCCCTCCGAAAGTTGTCTATACTGACCATTTTYAAGAAAAACCGCCTTGGTGAAGGCCTATTTCGCGTCATCATTTGAGCGAAATCGAAAGAAATGACTTCTATTCAACTTTTAGATAATTCTCAGATATCTGAATATTGTTGCCTCTTTCTAGAAATGAACGAAAACTTCTTAAAATCGTTCTCCCGAAAAAATGTTTTCTTCTCCTCGAGGACTACACGCGAAGTGGAAGAGGAAGCGCAACCACGTGACCATCCCTTCGTTTTTTGAGCGGTTTTTCAAAATATGGACGTCAGGATATTTATCGATGTTTCGTGGATTTCATGGTAAGTTTTCAATCCATTTTGATGAAAATTTTCTGAAATTCGACAAAGTTCTCATGGGTTTTATGCTGGGGTAGGAATAGTCGAACATAAACAGAACTTTGAATGATCAATGAAATATTTTTTCAGAATTCTCCAGCACGGGAGACTTTTGCTGAAATGAAGGAAATTAGATGGAAAAGAAAACAAGGATTCAGTTATCTGCTGGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>384 239 118 116 109 34</canonical_bands>
                <polymorphic_bands>384 239 234 109 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTTGAACTTTGGCACAAT</pcr_primer_p1>
		<pcr_primer_p2>CTAGAAAGAGGCAACAATATTCA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>ATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTCCCTCCGAAAGTTGTCTATACTGACCATTTTCAAGAAAAACCGCCTTGGTGAAGGCCTATTTCGCGTCATCATTTGAGCGAAATCGAAAGAAATGACTTCTATTCAACTTTTAGATAATTCTCAGATATCTGAATATTGTTGCCTCTTTCTAG</canonical_amplicon>
		<polymorphic_amplicon>ATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTCCCTCCGAAAGTTGTCTATACTGACCATTTTYAAGAAAAACCGCCTTGGTGAAGGCCTATTTCGCGTCATCATTTGAGCGAAATCGAAAGAAATGACTTCTATTCAACTTTTAGATAATTCTCAGATATCTGAATATTGTTGCCTCTTTCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21372</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>581442</contig_pos>
        <strand>+</strand>
        <context>TACTCGCAGA[G/T]GCTTCCCTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGA</left_flank>
        <right_flank>GCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTCCCTCCGA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACGTCTACAGAAGTCCCATCGACCACTTCTCCAAGCACTGGATTCTCCTACTCTACTTTCGTTGACTTCGTCATTCTCGTGGCTGTCATTGCTTTCATCGTGGTCGCCTTTGAATGCTGGAAGTTTTGCTATAGATGCGGAAAGCCGATCAATCGTCAGGTGATGCGGATGTCTCAGCTCGTCGACCATAGCATCTTGGTAAGAATGTATCTGCTAATAATCTATGAATTCTTGCGTTTTTCCAGGAAATTGACAACCCAGCGTTTGCTATCAGCCAGAACGAACAAGCTCTTACCACTGACAATGGAGAACTACCAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTCCCTCCGAAAGTTGTCTATACTGACCATTTTCAAGAAAAACCGCCTTGGTGAAGGCCTATTTCGCGTCATCATTTGAGCGAAATCGAAAGAAATGACTTCTATTCAACTTTTAGATAATTCTCAGATATCTGAATATTGTTGCCTCTTTCTAGAAATGAACGAAAACTTCTTAAAATCGTTCTCCCGAAAAAATGTTTTCTTCTCCTCGAGGACTACACGCGAAGTGGAAGAGGAAGCGCAACCACGTGACCATCCCTTCGTTTTTTGAGCGGTTTTTCAAAATATGGACGTCAGGATATTTATCGATGTTTCGTGGATTTCATGGTAAGTTTTCAATCCATTTTGATGAAAATTTTCTGAAATTCGACAAAGTTCTCATGGGTTTTATGCTGGGGTAGGAATAGTCGAACATAAACAGAACTTTGAATGATCAATGAAATATTTTTTCAGAATTCTC</canonical>
            <polymorphic>CACGTCTACAGAAGTCCCATCGACCACTTCTCCAAGCACTGGATTCTCCTACTCTACTTTCGTTGACTTCGTCATTCTCGTGGCTGTCATTGCTTTCATCGTGGTCGCCTTTGAATGCTGGAAGTTTTGCTATAGATGCGGAAAGCCGATCAATCGTCAGGTGATGCGGATGTCTCAGCTCGTCGACCATAGCATCTTGGTAAGAATGTATCTGCTAATAATCTATGAATTCTTGCGTTTTTCCAGGAAATTGACAACCCAGCGTTTGCTATCAGCCAGAACGAACAAGCTCTTACCACTGACAATGGAGAACTACCAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAKGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTCCCTCCGAAAGTTGTCTATACTGACCATTTTCAAGAAAAACCGCCTTGGTGAAGGCCTATTTCGCGTCATCATTTGAGCGAAATCGAAAGAAATGACTTCTATTCAACTTTTAGATAATTCTCAGATATCTGAATATTGTTGCCTCTTTCTAGAAATGAACGAAAACTTCTTAAAATCGTTCTCCCGAAAAAATGTTTTCTTCTCCTCGAGGACTACACGCGAAGTGGAAGAGGAAGCGCAACCACGTGACCATCCCTTCGTTTTTTGAGCGGTTTTTCAAAATATGGACGTCAGGATATTTATCGATGTTTCGTGGATTTCATGGTAAGTTTTCAATCCATTTTGATGAAAATTTTCTGAAATTCGACAAAGTTCTCATGGGTTTTATGCTGGGGTAGGAATAGTCGAACATAAACAGAACTTTGAATGATCAATGAAATATTTTTTCAGAATTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>403 212 97 96 83 62 33 14</canonical_bands>
                <polymorphic_bands>403 308 97 83 62 33 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCTTATATGTAATCTCCGAATTT</pcr_primer_p1>
		<pcr_primer_p2>GATTTCGCTCAAATGATGAC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTCCCTCCGAAAGTTGTCTATACTGACCATTTTCAAGAAAAACCGCCTTGGTGAAGGCCTATTTCGCGTCATCATTTGAGCGAAATC</canonical_amplicon>
		<polymorphic_amplicon>ACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAKGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTCCCTCCGAAAGTTGTCTATACTGACCATTTTCAAGAAAAACCGCCTTGGTGAAGGCCTATTTCGCGTCATCATTTGAGCGAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21373</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>581393</contig_pos>
        <strand></strand>
        <context>AATTTTTGAA[A/G]CGTAATCTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCGAATTTGATTTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAA</left_flank>
        <right_flank>CGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGG</right_flank>
        <qual_score>35</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTGCCATGACAGTTTGGAGACTAGTCTATCAACCACTCCAGAAGTTTCCACGTCTACAGAAGTCCCATCGACCACTTCTCCAAGCACTGGATTCTCCTACTCTACTTTCGTTGACTTCGTCATTCTCGTGGCTGTCATTGCTTTCATCGTGGTCGCCTTTGAATGCTGGAAGTTTTGCTATAGATGCGGAAAGCCGATCAATCGTCAGGTGATGCGGATGTCTCAGCTCGTCGACCATAGCATCTTGGTAAGAATGTATCTGCTAATAATCTATGAATTCTTGCGTTTTTCCAGGAAATTGACAACCCAGCGTTTGCTATCAGCCAGAACGAACAAGCTCTTACCACTGACAATGGAGAACTACCAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTCCCTCCGAAAGTTGTCTATACTGACCATTTTCAAGAAAAACCGCCTTGGTGAAGGCCTATTTCGCGTCATCATTTGAGCGAAATCGAAAGAAATGACTTCTATTCAACTTTTAGATAATTCTCAGATATCTGAATATTGTTGCCTCTTTCTAGAAATGAACGAAAACTTCTTAAAATCGTTCTCCCGAAAAAATGTTTTCTTCTCCTCGAGGACTACACGCGAAGTGGAAGAGGAAGCGCAACCACGTGACCATCCCTTCGTTTTTTGAGCGGTTTTTCAAAATATGGACGTCAGGATATTTATCGATGTTTCGTGGATTTCATGGTAAGTTTTCAATCCATTTTGATGAAAATTTTCTGAAATTCGACAAAGTTCTCATGGGTTTTATGCTGGGGTAGGAATAGTCGA</canonical>
            <polymorphic>GTTGCCATGACAGTTTGGAGACTAGTCTATCAACCACTCCAGAAGTTTCCACGTCTACAGAAGTCCCATCGACCACTTCTCCAAGCACTGGATTCTCCTACTCTACTTTCGTTGACTTCGTCATTCTCGTGGCTGTCATTGCTTTCATCGTGGTCGCCTTTGAATGCTGGAAGTTTTGCTATAGATGCGGAAAGCCGATCAATCGTCAGGTGATGCGGATGTCTCAGCTCGTCGACCATAGCATCTTGGTAAGAATGTATCTGCTAATAATCTATGAATTCTTGCGTTTTTCCAGGAAATTGACAACCCAGCGTTTGCTATCAGCCAGAACGAACAAGCTCTTACCACTGACAATGGAGAACTACCAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAARCGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTCCCTCCGAAAGTTGTCTATACTGACCATTTTCAAGAAAAACCGCCTTGGTGAAGGCCTATTTCGCGTCATCATTTGAGCGAAATCGAAAGAAATGACTTCTATTCAACTTTTAGATAATTCTCAGATATCTGAATATTGTTGCCTCTTTCTAGAAATGAACGAAAACTTCTTAAAATCGTTCTCCCGAAAAAATGTTTTCTTCTCCTCGAGGACTACACGCGAAGTGGAAGAGGAAGCGCAACCACGTGACCATCCCTTCGTTTTTTGAGCGGTTTTTCAAAATATGGACGTCAGGATATTTATCGATGTTTCGTGGATTTCATGGTAAGTTTTCAATCCATTTTGATGAAAATTTTCTGAAATTCGACAAAGTTCTCATGGGTTTTATGCTGGGGTAGGAATAGTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>449 336 120 51 44</canonical_bands>
                <polymorphic_bands>785 120 51 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACCACTGACAATGGAGAACTAC</pcr_primer_p1>
		<pcr_primer_p2>GAAAGAACGATGTGAGAACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACCACTGACAATGGAGAACTACCAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTC</canonical_amplicon>
		<polymorphic_amplicon>TACCACTGACAATGGAGAACTACCAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAARCGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21374</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>581367</contig_pos>
        <strand>+</strand>
        <context>TCAATGRTTT[A/T]TTGTTTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGAATATTCAACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTT</left_flank>
        <right_flank>TTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATGTCTCTCTTGGACTGATCAAAAGTTGCCATGACAGTTTGGAGACTAGTCTATCAACCACTCCAGAAGTTTCCACGTCTACAGAAGTCCCATCGACCACTTCTCCAAGCACTGGATTCTCCTACTCTACTTTCGTTGACTTCGTCATTCTCGTGGCTGTCATTGCTTTCATCGTGGTCGCCTTTGAATGCTGGAAGTTTTGCTATAGATGCGGAAAGCCGATCAATCGTCAGGTGATGCGGATGTCTCAGCTCGTCGACCATAGCATCTTGGTAAGAATGTATCTGCTAATAATCTATGAATTCTTGCGTTTTTCCAGGAAATTGACAACCCAGCGTTTGCTATCAGCCAGAACGAACAAGCTCTTACCACTGACAATGGAGAACTACCAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTCCCTCCGAAAGTTGTCTATACTGACCATTTTCAAGAAAAACCGCCTTGGTGAAGGCCTATTTCGCGTCATCATTTGAGCGAAATCGAAAGAAATGACTTCTATTCAACTTTTAGATAATTCTCAGATATCTGAATATTGTTGCCTCTTTCTAGAAATGAACGAAAACTTCTTAAAATCGTTCTCCCGAAAAAATGTTTTCTTCTCCTCGAGGACTACACGCGAAGTGGAAGAGGAAGCGCAACCACGTGACCATCCCTTCGTTTTTTGAGCGGTTTTTCAAAATATGGACGTCAGGATATTTATCGATGTTTCGTGGATTTCATGGTAAGTTTTCAATCCATTTTGATGAAAATTTTCTGAAATTCGACAAAGTTCTCATGGG</canonical>
            <polymorphic>TCATGTCTCTCTTGGACTGATCAAAAGTTGCCATGACAGTTTGGAGACTAGTCTATCAACCACTCCAGAAGTTTCCACGTCTACAGAAGTCCCATCGACCACTTCTCCAAGCACTGGATTCTCCTACTCTACTTTCGTTGACTTCGTCATTCTCGTGGCTGTCATTGCTTTCATCGTGGTCGCCTTTGAATGCTGGAAGTTTTGCTATAGATGCGGAAAGCCGATCAATCGTCAGGTGATGCGGATGTCTCAGCTCGTCGACCATAGCATCTTGGTAAGAATGTATCTGCTAATAATCTATGAATTCTTGCGTTTTTCCAGGAAATTGACAACCCAGCGTTTGCTATCAGCCAGAACGAACAAGCTCTTACCACTGACAATGGAGAACTACCAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTWTTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTCCCTCCGAAAGTTGTCTATACTGACCATTTTCAAGAAAAACCGCCTTGGTGAAGGCCTATTTCGCGTCATCATTTGAGCGAAATCGAAAGAAATGACTTCTATTCAACTTTTAGATAATTCTCAGATATCTGAATATTGTTGCCTCTTTCTAGAAATGAACGAAAACTTCTTAAAATCGTTCTCCCGAAAAAATGTTTTCTTCTCCTCGAGGACTACACGCGAAGTGGAAGAGGAAGCGCAACCACGTGACCATCCCTTCGTTTTTTGAGCGGTTTTTCAAAATATGGACGTCAGGATATTTATCGATGTTTCGTGGATTTCATGGTAAGTTTTCAATCCATTTTGATGAAAATTTTCTGAAATTCGACAAAGTTCTCATGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACCACTGACAATGGAGAACTAC</pcr_primer_p1>
		<pcr_primer_p2>GAAAGAACGATGTGAGAACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACCACTGACAATGGAGAACTACCAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTC</canonical_amplicon>
		<polymorphic_amplicon>TACCACTGACAATGGAGAACTACCAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTWTTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21375</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>581355</contig_pos>
        <strand>+</strand>
        <context>CGAATTTGAT[G/T]TTCAATGRTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGAT</left_flank>
        <right_flank>TTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATTCAATTCGTCATGTCTCTCTTGGACTGATCAAAAGTTGCCATGACAGTTTGGAGACTAGTCTATCAACCACTCCAGAAGTTTCCACGTCTACAGAAGTCCCATCGACCACTTCTCCAAGCACTGGATTCTCCTACTCTACTTTCGTTGACTTCGTCATTCTCGTGGCTGTCATTGCTTTCATCGTGGTCGCCTTTGAATGCTGGAAGTTTTGCTATAGATGCGGAAAGCCGATCAATCGTCAGGTGATGCGGATGTCTCAGCTCGTCGACCATAGCATCTTGGTAAGAATGTATCTGCTAATAATCTATGAATTCTTGCGTTTTTCCAGGAAATTGACAACCCAGCGTTTGCTATCAGCCAGAACGAACAAGCTCTTACCACTGACAATGGAGAACTACCAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTCCCTCCGAAAGTTGTCTATACTGACCATTTTCAAGAAAAACCGCCTTGGTGAAGGCCTATTTCGCGTCATCATTTGAGCGAAATCGAAAGAAATGACTTCTATTCAACTTTTAGATAATTCTCAGATATCTGAATATTGTTGCCTCTTTCTAGAAATGAACGAAAACTTCTTAAAATCGTTCTCCCGAAAAAATGTTTTCTTCTCCTCGAGGACTACACGCGAAGTGGAAGAGGAAGCGCAACCACGTGACCATCCCTTCGTTTTTTGAGCGGTTTTTCAAAATATGGACGTCAGGATATTTATCGATGTTTCGTGGATTTCATGGTAAGTTTTCAATCCATTTTGATGAAAATTTTCTGAAATTCGACAA</canonical>
            <polymorphic>ATATTCAATTCGTCATGTCTCTCTTGGACTGATCAAAAGTTGCCATGACAGTTTGGAGACTAGTCTATCAACCACTCCAGAAGTTTCCACGTCTACAGAAGTCCCATCGACCACTTCTCCAAGCACTGGATTCTCCTACTCTACTTTCGTTGACTTCGTCATTCTCGTGGCTGTCATTGCTTTCATCGTGGTCGCCTTTGAATGCTGGAAGTTTTGCTATAGATGCGGAAAGCCGATCAATCGTCAGGTGATGCGGATGTCTCAGCTCGTCGACCATAGCATCTTGGTAAGAATGTATCTGCTAATAATCTATGAATTCTTGCGTTTTTCCAGGAAATTGACAACCCAGCGTTTGCTATCAGCCAGAACGAACAAGCTCTTACCACTGACAATGGAGAACTACCAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATKTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTCCCTCCGAAAGTTGTCTATACTGACCATTTTCAAGAAAAACCGCCTTGGTGAAGGCCTATTTCGCGTCATCATTTGAGCGAAATCGAAAGAAATGACTTCTATTCAACTTTTAGATAATTCTCAGATATCTGAATATTGTTGCCTCTTTCTAGAAATGAACGAAAACTTCTTAAAATCGTTCTCCCGAAAAAATGTTTTCTTCTCCTCGAGGACTACACGCGAAGTGGAAGAGGAAGCGCAACCACGTGACCATCCCTTCGTTTTTTGAGCGGTTTTTCAAAATATGGACGTCAGGATATTTATCGATGTTTCGTGGATTTCATGGTAAGTTTTCAATCCATTTTGATGAAAATTTTCTGAAATTCGACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACCACTGACAATGGAGAACTAC</pcr_primer_p1>
		<pcr_primer_p2>GAAAGAACGATGTGAGAACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACCACTGACAATGGAGAACTACCAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTC</canonical_amplicon>
		<polymorphic_amplicon>TACCACTGACAATGGAGAACTACCAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATKTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21376</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>581326</contig_pos>
        <strand>+</strand>
        <context>TTTGAATATT[C/T]AACCTTATAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATT</left_flank>
        <right_flank>AACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTATTGTTTTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGAATTTGTGAAAGCGATGGGACCTCGATATTCAATTCGTCATGTCTCTCTTGGACTGATCAAAAGTTGCCATGACAGTTTGGAGACTAGTCTATCAACCACTCCAGAAGTTTCCACGTCTACAGAAGTCCCATCGACCACTTCTCCAAGCACTGGATTCTCCTACTCTACTTTCGTTGACTTCGTCATTCTCGTGGCTGTCATTGCTTTCATCGTGGTCGCCTTTGAATGCTGGAAGTTTTGCTATAGATGCGGAAAGCCGATCAATCGTCAGGTGATGCGGATGTCTCAGCTCGTCGACCATAGCATCTTGGTAAGAATGTATCTGCTAATAATCTATGAATTCTTGCGTTTTTCCAGGAAATTGACAACCCAGCGTTTGCTATCAGCCAGAACGAACAAGCTCTTACCACTGACAATGGAGAACTACCAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTCCCTCCGAAAGTTGTCTATACTGACCATTTTCAAGAAAAACCGCCTTGGTGAAGGCCTATTTCGCGTCATCATTTGAGCGAAATCGAAAGAAATGACTTCTATTCAACTTTTAGATAATTCTCAGATATCTGAATATTGTTGCCTCTTTCTAGAAATGAACGAAAACTTCTTAAAATCGTTCTCCCGAAAAAATGTTTTCTTCTCCTCGAGGACTACACGCGAAGTGGAAGAGGAAGCGCAACCACGTGACCATCCCTTCGTTTTTTGAGCGGTTTTTCAAAATATGGACGTCAGGATATTTATCGATGTTTCGTGGATTTCATGGTAAGTTTTCAATCCAT</canonical>
            <polymorphic>TCAGAATTTGTGAAAGCGATGGGACCTCGATATTCAATTCGTCATGTCTCTCTTGGACTGATCAAAAGTTGCCATGACAGTTTGGAGACTAGTCTATCAACCACTCCAGAAGTTTCCACGTCTACAGAAGTCCCATCGACCACTTCTCCAAGCACTGGATTCTCCTACTCTACTTTCGTTGACTTCGTCATTCTCGTGGCTGTCATTGCTTTCATCGTGGTCGCCTTTGAATGCTGGAAGTTTTGCTATAGATGCGGAAAGCCGATCAATCGTCAGGTGATGCGGATGTCTCAGCTCGTCGACCATAGCATCTTGGTAAGAATGTATCTGCTAATAATCTATGAATTCTTGCGTTTTTCCAGGAAATTGACAACCCAGCGTTTGCTATCAGCCAGAACGAACAAGCTCTTACCACTGACAATGGAGAACTACCAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTYAACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTCCCTCCGAAAGTTGTCTATACTGACCATTTTCAAGAAAAACCGCCTTGGTGAAGGCCTATTTCGCGTCATCATTTGAGCGAAATCGAAAGAAATGACTTCTATTCAACTTTTAGATAATTCTCAGATATCTGAATATTGTTGCCTCTTTCTAGAAATGAACGAAAACTTCTTAAAATCGTTCTCCCGAAAAAATGTTTTCTTCTCCTCGAGGACTACACGCGAAGTGGAAGAGGAAGCGCAACCACGTGACCATCCCTTCGTTTTTTGAGCGGTTTTTCAAAATATGGACGTCAGGATATTTATCGATGTTTCGTGGATTTCATGGTAAGTTTTCAATCCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACCACTGACAATGGAGAACTAC</pcr_primer_p1>
		<pcr_primer_p2>GAAAGAACGATGTGAGAACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACCACTGACAATGGAGAACTACCAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTC</canonical_amplicon>
		<polymorphic_amplicon>TACCACTGACAATGGAGAACTACCAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTYAACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21377</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>581259</contig_pos>
        <strand>+</strand>
        <context>GGAGAACTAC[A/C]AACGATGGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCTATCAGCCAGAACGAACAAGCTCTTACCACTGACAATGGAGAACTAC</left_flank>
        <right_flank>AACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTTGCTTGAATCACGAAATCGACGCCATGACGGCAAAGATGGTGGACAAGAACGAAGTTCCAAATTCAGAATTTGTGAAAGCGATGGGACCTCGATATTCAATTCGTCATGTCTCTCTTGGACTGATCAAAAGTTGCCATGACAGTTTGGAGACTAGTCTATCAACCACTCCAGAAGTTTCCACGTCTACAGAAGTCCCATCGACCACTTCTCCAAGCACTGGATTCTCCTACTCTACTTTCGTTGACTTCGTCATTCTCGTGGCTGTCATTGCTTTCATCGTGGTCGCCTTTGAATGCTGGAAGTTTTGCTATAGATGCGGAAAGCCGATCAATCGTCAGGTGATGCGGATGTCTCAGCTCGTCGACCATAGCATCTTGGTAAGAATGTATCTGCTAATAATCTATGAATTCTTGCGTTTTTCCAGGAAATTGACAACCCAGCGTTTGCTATCAGCCAGAACGAACAAGCTCTTACCACTGACAATGGAGAACTACCAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTCCCTCCGAAAGTTGTCTATACTGACCATTTTCAAGAAAAACCGCCTTGGTGAAGGCCTATTTCGCGTCATCATTTGAGCGAAATCGAAAGAAATGACTTCTATTCAACTTTTAGATAATTCTCAGATATCTGAATATTGTTGCCTCTTTCTAGAAATGAACGAAAACTTCTTAAAATCGTTCTCCCGAAAAAATGTTTTCTTCTCCTCGAGGACTACACGCGAAGTGGAAGAGGAAGCGCAACCACGTGACCATCCCTTCGTTTTTTGAGCGGTT</canonical>
            <polymorphic>TCGTTGCTTGAATCACGAAATCGACGCCATGACGGCAAAGATGGTGGACAAGAACGAAGTTCCAAATTCAGAATTTGTGAAAGCGATGGGACCTCGATATTCAATTCGTCATGTCTCTCTTGGACTGATCAAAAGTTGCCATGACAGTTTGGAGACTAGTCTATCAACCACTCCAGAAGTTTCCACGTCTACAGAAGTCCCATCGACCACTTCTCCAAGCACTGGATTCTCCTACTCTACTTTCGTTGACTTCGTCATTCTCGTGGCTGTCATTGCTTTCATCGTGGTCGCCTTTGAATGCTGGAAGTTTTGCTATAGATGCGGAAAGCCGATCAATCGTCAGGTGATGCGGATGTCTCAGCTCGTCGACCATAGCATCTTGGTAAGAATGTATCTGCTAATAATCTATGAATTCTTGCGTTTTTCCAGGAAATTGACAACCCAGCGTTTGCTATCAGCCAGAACGAACAAGCTCTTACCACTGACAATGGAGAACTACMAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTCCCTCCGAAAGTTGTCTATACTGACCATTTTCAAGAAAAACCGCCTTGGTGAAGGCCTATTTCGCGTCATCATTTGAGCGAAATCGAAAGAAATGACTTCTATTCAACTTTTAGATAATTCTCAGATATCTGAATATTGTTGCCTCTTTCTAGAAATGAACGAAAACTTCTTAAAATCGTTCTCCCGAAAAAATGTTTTCTTCTCCTCGAGGACTACACGCGAAGTGGAAGAGGAAGCGCAACCACGTGACCATCCCTTCGTTTTTTGAGCGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATGAATTCTTGCGTTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TGTGCCAAAGTTCAAGATTAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCTATGAATTCTTGCGTTTTTCCAGGAAATTGACAACCCAGCGTTTGCTATCAGCCAGAACGAACAAGCTCTTACCACTGACAATGGAGAACTACCAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACA</canonical_amplicon>
		<polymorphic_amplicon>TCTATGAATTCTTGCGTTTTTCCAGGAAATTGACAACCCAGCGTTTGCTATCAGCCAGAACGAACAAGCTCTTACCACTGACAATGGAGAACTACMAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21378</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>617192</contig_pos>
        <strand>+</strand>
        <context>CGGACAAAAG[A/G]CGAACGTCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAACCGATAATCAAAAAGCGATGAAGGCAAGAAGAGACAGCGGACAAAAG</left_flank>
        <right_flank>CGAACGTCTTGTCTCTATCGTTATTCTCTCTATTCCTCTTCGAAACTCCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAATTTTCGAACCTTACACGTTTCTGATAAGGATGTTTATTCTTTTCAACGGGCAACCCATTGCCTATCACCAGTGTGTTCAGTTATCAATAATTTGACAATTTTGGTAGAATCGATCAATCTTTCACATGGTCAAACAACGTCAACCCACTCTCTCTCTACCTTTTCCCTAGTCGTGTTGTGTCCACATTGTACTTCCCCACCTACAAATATACAACGTGAATAGAAAAACAAAGTTTTTGCGATTTTCGGTTTTCAATCTTATCTCAATTCTGGTTTTCTCATTGTGTCTGGCCTATGTTGCGGAATGAATTTCACACATACACAAGTTTTGTTTCAAAATTTTGTGATCTATAAATTTCAAAGTATATCAACCTTTCAAAAAATTTCAATTTTAAAAATTGCTCATTTAACTTTTGGTTTTCTATTTTTCTTCTCGTCTGTTTTGCAACCGATAATCAAAAAGCGATGAAGGCAAGAAGAGACAGCGGACAAAAGGCGAACGTCTTGTCTCTATCGTTATTCTCTCTATTCCTCTTCGAAACTCCACGTGAATCGAGTATCTCTAAGACTACTGTGAGCGAATTTTCGCTCTGTGTTTGCGTGAGAAGAAAAGACCGAAAGATTTGGTGAGACGGGTCGGAATGGGTGAGTGTGCGACGACGGGGCTTGGGGTCGTATGAGTGTAGGGTTGGCCGGGAAGAGAGCGGAGTGTTTTGGTGTGTATGTGCCCTTCCCAAGGTTAGCCACTGGGTCCCTCTTTTTTCTTATTATTGCCTAGAAGAAAATAGGACAATCGTCCTATAGTTATTCCTTTTTTTCCTGGTCCTTTTCGAGTCAAAACCATTGATTTTCAAAAAAAAAAATTATTTTAAAAATTATTTTAGTTTTTTTTCCCGAGTTTCCATGATTTTCAAGTTAGAAAAGTTTGCGTCCCTCACCCTTCTCTATAATAGGATTATCTTAGTTCTAAAACTTCAAAAAGCGCGCATCTCCACC</canonical>
            <polymorphic>CCAATTTTCGAACCTTACACGTTTCTGATAAGGATGTTTATTCTTTTCAACGGGCAACCCATTGCCTATCACCAGTGTGTTCAGTTATCAATAATTTGACAATTTTGGTAGAATCGATCAATCTTTCACATGGTCAAACAACGTCAACCCACTCTCTCTCTACCTTTTCCCTAGTCGTGTTGTGTCCACATTGTACTTCCCCACCTACAAATATACAACGTGAATAGAAAAACAAAGTTTTTGCGATTTTCGGTTTTCAATCTTATCTCAATTCTGGTTTTCTCATTGTGTCTGGCCTATGTTGCGGAATGAATTTCACACATACACAAGTTTTGTTTCAAAATTTTGTGATCTATAAATTTCAAAGTATATCAACCTTTCAAAAAATTTCAATTTTAAAAATTGCTCATTTAACTTTTGGTTTTCTATTTTTCTTCTCGTCTGTTTTGCAACCGATAATCAAAAAGCGATGAAGGCAAGAAGAGACAGCGGACAAAAGRCGAACGTCTTGTCTCTATCGTTATTCTCTCTATTCCTCTTCGAAACTCCACGTGAATCGAGTATCTCTAAGACTACTGTGAGCGAATTTTCGCTCTGTGTTTGCGTGAGAAGAAAAGACCGAAAGATTTGGTGAGACGGGTCGGAATGGGTGAGTGTGCGACGACGGGGCTTGGGGTCGTATGAGTGTAGGGTTGGCCGGGAAGAGAGCGGAGTGTTTTGGTGTGTATGTGCCCTTCCCAAGGTTAGCCACTGGGTCCCTCTTTTTTCTTATTATTGCCTAGAAGAAAATAGGACAATCGTCCTATAGTTATTCCTTTTTTTCCTGGTCCTTTTCGAGTCAAAACCATTGATTTTCAAAAAAAAAAATTATTTTAAAAATTATTTTAGTTTTTTTTCCCGAGTTTCCATGATTTTCAAGTTAGAAAAGTTTGCGTCCCTCACCCTTCTCTATAATAGGATTATCTTAGTTCTAAAACTTCAAAAAGCGCGCATCTCCACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACATACACAAGTTTTGTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>ATACTCGATTCACGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CACATACACAAGTTTTGTTTCAAAATTTTGTGATCTATAAATTTCAAAGTATATCAACCTTTCAAAAAATTTCAATTTTAAAAATTGCTCATTTAACTTTTGGTTTTCTATTTTTCTTCTCGTCTGTTTTGCAACCGATAATCAAAAAGCGATGAAGGCAAGAAGAGACAGCGGACAAAAGGCGAACGTCTTGTCTCTATCGTTATTCTCTCTATTCCTCTTCGAAACTCCACGTGAATCGAGTAT</canonical_amplicon>
		<polymorphic_amplicon>CACATACACAAGTTTTGTTTCAAAATTTTGTGATCTATAAATTTCAAAGTATATCAACCTTTCAAAAAATTTCAATTTTAAAAATTGCTCATTTAACTTTTGGTTTTCTATTTTTCTTCTCGTCTGTTTTGCAACCGATAATCAAAAAGCGATGAAGGCAAGAAGAGACAGCGGACAAAAGRCGAACGTCTTGTCTCTATCGTTATTCTCTCTATTCCTCTTCGAAACTCCACGTGAATCGAGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21419</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>620979</contig_pos>
        <strand>+</strand>
        <context>CCTTTAGTGC[C/T]GCTTGTTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTTTTGAGACACTTCTCAATTTCCCTTTAAAACCTCAGTCCTTTAGTGC</left_flank>
        <right_flank>GCTTGTTTTCTCTGAATGCCAAATTCTCCCCCACCTTTCCCTTGAAAGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCGATGAGCATGGAGGCGAGTATTGAGAAAATGGAAGTGCATGACTTTTCGGATATGTCGGTGAGGGTTAACACATTTTTTTAATTCTACCAATCAGCTTTTCGTCGCTTCTACCTAACCCGGAACTGTATCTGTGGAGTTGGTCTTATAGAGTTACTAAGCTTTTTGAGTTTCATTTCTTTAATAATAGCTCAGAATCTGATTAATAATTCATCTCAGGATTTCCAGTGCGATGTGACACCACCACCATCGCCAGGAGGAGCCAAGCTGTCACAGACAATGCAATTTTTTGAGATTTGCGCTGCTCTAATTGGAACTTTGGCTCGTTAAGCCTGCACAAAACACTCCATTACTCTATTCATTCCCAGATTGATTCAAAATTGGTTCAATTTTTCGTAACTTTGCTGCAAATATTTTATGCTTCGAGCAAAAAAAACATTATTTTTGACTTTTGAGACACTTCTCAATTTCCCTTTAAAACCTCAGTCCTTTAGTGCCGCTTGTTTTCTCTGAATGCCAAATTCTCCCCCACCTTTCCCTTGAAAGTTTTTTTTTTTTGAAAAAAGAATCATAACAAACTTTTCCTATATTTTAAAAATCTTGTCATTAAATTTGTGTATCTGTGAATAGACCCCTTTTCTATATGCGAGTAGTATCTATTTCTTCTCCTAAAAATGGTTTGTATCTTTTTTTATCCGTTTCATACTTTTTTTTTGTCCAGTTCAGTCAAGCTGAATCCTTTGTAATATAAGAACCCAACTACAAAAATCTATTTTTTCGTAAGATTTTTATTGTAAATGAAGGATTTCATTGTAAAAAAATATAGGTGACTTGGGTTTAGAAAGATCCGGAAGCCACTTTCTTGGCTTTTTCTGCTTTTTTCTTCTTATATAGAGAGTAATTGTGCTCGGCGCTCATGTAAGCAGTCTCCAGAAACAGGAAAACGAATTCGCAACATGTCAAGAAAGAGATTCCGCACCAGAGACCCAACTGTCCAC</canonical>
            <polymorphic>AAGCGATGAGCATGGAGGCGAGTATTGAGAAAATGGAAGTGCATGACTTTTCGGATATGTCGGTGAGGGTTAACACATTTTTTTAATTCTACCAATCAGCTTTTCGTCGCTTCTACCTAACCCGGAACTGTATCTGTGGAGTTGGTCTTATAGAGTTACTAAGCTTTTTGAGTTTCATTTCTTTAATAATAGCTCAGAATCTGATTAATAATTCATCTCAGGATTTCCAGTGCGATGTGACACCACCACCATCGCCAGGAGGAGCCAAGCTGTCACAGACAATGCAATTTTTTGAGATTTGCGCTGCTCTAATTGGAACTTTGGCTCGTTAAGCCTGCACAAAACACTCCATTACTCTATTCATTCCCAGATTGATTCAAAATTGGTTCAATTTTTCGTAACTTTGCTGCAAATATTTTATGCTTCGAGCAAAAAAAACATTATTTTTGACTTTTGAGACACTTCTCAATTTCCCTTTAAAACCTCAGTCCTTTAGTGCYGCTTGTTTTCTCTGAATGCCAAATTCTCCCCCACCTTTCCCTTGAAAGTTTTTTTTTTTTGAAAAAAGAATCATAACAAACTTTTCCTATATTTTAAAAATCTTGTCATTAAATTTGTGTATCTGTGAATAGACCCCTTTTCTATATGCGAGTAGTATCTATTTCTTCTCCTAAAAATGGTTTGTATCTTTTTTTATCCGTTTCATACTTTTTTTTTGTCCAGTTCAGTCAAGCTGAATCCTTTGTAATATAAGAACCCAACTACAAAAATCTATTTTTTCGTAAGATTTTTATTGTAAATGAAGGATTTCATTGTAAAAAAATATAGGTGACTTGGGTTTAGAAAGATCCGGAAGCCACTTTCTTGGCTTTTTCTGCTTTTTTCTTCTTATATAGAGAGTAATTGTGCTCGGCGCTCATGTAAGCAGTCTCCAGAAACAGGAAAACGAATTCGCAACATGTCAAGAAAGAGATTCCGCACCAGAGACCCAACTGTCCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>499 477 24</canonical_bands>
                <polymorphic_bands>976 24</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGACTTTTGAGACACTTCT</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGATACAAACCATTTTTAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGACTTTTGAGACACTTCTCAATTTCCCTTTAAAACCTCAGTCCTTTAGTGCCGCTTGTTTTCTCTGAATGCCAAATTCTCCCCCACCTTTCCCTTGAAAGTTTTTTTTTTTTGAAAAAAGAATCATAACAAACTTTTCCTATATTTTAAAAATCTTGTCATTAAATTTGTGTATCTGTGAATAGACCCCTTTTCTATATGCGAGTAGTATCTATTTCTTCTCCTAAAAATGGTTTGTATCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGACTTTTGAGACACTTCTCAATTTCCCTTTAAAACCTCAGTCCTTTAGTGCYGCTTGTTTTCTCTGAATGCCAAATTCTCCCCCACCTTTCCCTTGAAAGTTTTTTTTTTTTGAAAAAAGAATCATAACAAACTTTTCCTATATTTTAAAAATCTTGTCATTAAATTTGTGTATCTGTGAATAGACCCCTTTTCTATATGCGAGTAGTATCTATTTCTTCTCCTAAAAATGGTTTGTATCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21420</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>621070</contig_pos>
        <strand></strand>
        <context>CTTTTCCTAT[A/T]TTTTAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTGAAAGTTTTTTTTTTTTGAAAAAAGAATCATAACAAACTTTTCCTAT</left_flank>
        <right_flank>TTTTAAAAATCTTGTCATTAAATTTGTGTATCTGTGAATAGACCCCTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAATCAGCTTTTCGTCGCTTCTACCTAACCCGGAACTGTATCTGTGGAGTTGGTCTTATAGAGTTACTAAGCTTTTTGAGTTTCATTTCTTTAATAATAGCTCAGAATCTGATTAATAATTCATCTCAGGATTTCCAGTGCGATGTGACACCACCACCATCGCCAGGAGGAGCCAAGCTGTCACAGACAATGCAATTTTTTGAGATTTGCGCTGCTCTAATTGGAACTTTGGCTCGTTAAGCCTGCACAAAACACTCCATTACTCTATTCATTCCCAGATTGATTCAAAATTGGTTCAATTTTTCGTAACTTTGCTGCAAATATTTTATGCTTCGAGCAAAAAAAACATTATTTTTGACTTTTGAGACACTTCTCAATTTCCCTTTAAAACCTCAGTCCTTTAGTGCCGCTTGTTTTCTCTGAATGCCAAATTCTCCCCCACCTTTCCCTTGAAAGTTTTTTTTTTTTGAAAAAAGAATCATAACAAACTTTTCCTATATTTTAAAAATCTTGTCATTAAATTTGTGTATCTGTGAATAGACCCCTTTTCTATATGCGAGTAGTATCTATTTCTTCTCCTAAAAATGGTTTGTATCTTTTTTTATCCGTTTCATACTTTTTTTTTGTCCAGTTCAGTCAAGCTGAATCCTTTGTAATATAAGAACCCAACTACAAAAATCTATTTTTTCGTAAGATTTTTATTGTAAATGAAGGATTTCATTGTAAAAAAATATAGGTGACTTGGGTTTAGAAAGATCCGGAAGCCACTTTCTTGGCTTTTTCTGCTTTTTTCTTCTTATATAGAGAGTAATTGTGCTCGGCGCTCATGTAAGCAGTCTCCAGAAACAGGAAAACGAATTCGCAACATGTCAAGAAAGAGATTCCGCACCAGAGACCCAACTGTCCACCGAAATCAGCTAACAAGTTGACGAACTGAAAGAAAACGGATTAAAAAAGGCAAGTTAGAAGTTAAGCGCACTCCATAAGCCTCAGATTCGG</canonical>
            <polymorphic>CCAATCAGCTTTTCGTCGCTTCTACCTAACCCGGAACTGTATCTGTGGAGTTGGTCTTATAGAGTTACTAAGCTTTTTGAGTTTCATTTCTTTAATAATAGCTCAGAATCTGATTAATAATTCATCTCAGGATTTCCAGTGCGATGTGACACCACCACCATCGCCAGGAGGAGCCAAGCTGTCACAGACAATGCAATTTTTTGAGATTTGCGCTGCTCTAATTGGAACTTTGGCTCGTTAAGCCTGCACAAAACACTCCATTACTCTATTCATTCCCAGATTGATTCAAAATTGGTTCAATTTTTCGTAACTTTGCTGCAAATATTTTATGCTTCGAGCAAAAAAAACATTATTTTTGACTTTTGAGACACTTCTCAATTTCCCTTTAAAACCTCAGTCCTTTAGTGCCGCTTGTTTTCTCTGAATGCCAAATTCTCCCCCACCTTTCCCTTGAAAGTTTTTTTTTTTTGAAAAAAGAATCATAACAAACTTTTCCTATWTTTTAAAAATCTTGTCATTAAATTTGTGTATCTGTGAATAGACCCCTTTTCTATATGCGAGTAGTATCTATTTCTTCTCCTAAAAATGGTTTGTATCTTTTTTTATCCGTTTCATACTTTTTTTTTGTCCAGTTCAGTCAAGCTGAATCCTTTGTAATATAAGAACCCAACTACAAAAATCTATTTTTTCGTAAGATTTTTATTGTAAATGAAGGATTTCATTGTAAAAAAATATAGGTGACTTGGGTTTAGAAAGATCCGGAAGCCACTTTCTTGGCTTTTTCTGCTTTTTTCTTCTTATATAGAGAGTAATTGTGCTCGGCGCTCATGTAAGCAGTCTCCAGAAACAGGAAAACGAATTCGCAACATGTCAAGAAAGAGATTCCGCACCAGAGACCCAACTGTCCACCGAAATCAGCTAACAAGTTGACGAACTGAAAGAAAACGGATTAAAAAAGGCAAGTTAGAAGTTAAGCGCACTCCATAAGCCTCAGATTCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGACTTTTGAGACACTTCT</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGATACAAACCATTTTTAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGACTTTTGAGACACTTCTCAATTTCCCTTTAAAACCTCAGTCCTTTAGTGCCGCTTGTTTTCTCTGAATGCCAAATTCTCCCCCACCTTTCCCTTGAAAGTTTTTTTTTTTTGAAAAAAGAATCATAACAAACTTTTCCTATATTTTAAAAATCTTGTCATTAAATTTGTGTATCTGTGAATAGACCCCTTTTCTATATGCGAGTAGTATCTATTTCTTCTCCTAAAAATGGTTTGTATCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGACTTTTGAGACACTTCTCAATTTCCCTTTAAAACCTCAGTCCTTTAGTGCCGCTTGTTTTCTCTGAATGCCAAATTCTCCCCCACCTTTCCCTTGAAAGTTTTTTTTTTTTGAAAAAAGAATCATAACAAACTTTTCCTATWTTTTAAAAATCTTGTCATTAAATTTGTGTATCTGTGAATAGACCCCTTTTCTATATGCGAGTAGTATCTATTTCTTCTCCTAAAAATGGTTTGTATCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21421</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>621234</contig_pos>
        <strand></strand>
        <context>GTAATATAAG[A/T]ACCCAACTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATACTTTTTTTTTGTCCAGTTCAGTCAAGCTGAATCCTTTGTAATATAAG</left_flank>
        <right_flank>ACCCAACTACAAAAATCTATTTTTTCGTAAGATTTTTATTGTAAATGAAG</right_flank>
        <qual_score>49</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGGAGGAGCCAAGCTGTCACAGACAATGCAATTTTTTGAGATTTGCGCTGCTCTAATTGGAACTTTGGCTCGTTAAGCCTGCACAAAACACTCCATTACTCTATTCATTCCCAGATTGATTCAAAATTGGTTCAATTTTTCGTAACTTTGCTGCAAATATTTTATGCTTCGAGCAAAAAAAACATTATTTTTGACTTTTGAGACACTTCTCAATTTCCCTTTAAAACCTCAGTCCTTTAGTGCCGCTTGTTTTCTCTGAATGCCAAATTCTCCCCCACCTTTCCCTTGAAAGTTTTTTTTTTTTGAAAAAAGAATCATAACAAACTTTTCCTATATTTTAAAAATCTTGTCATTAAATTTGTGTATCTGTGAATAGACCCCTTTTCTATATGCGAGTAGTATCTATTTCTTCTCCTAAAAATGGTTTGTATCTTTTTTTATCCGTTTCATACTTTTTTTTTGTCCAGTTCAGTCAAGCTGAATCCTTTGTAATATAAGAACCCAACTACAAAAATCTATTTTTTCGTAAGATTTTTATTGTAAATGAAGGATTTCATTGTAAAAAAATATAGGTGACTTGGGTTTAGAAAGATCCGGAAGCCACTTTCTTGGCTTTTTCTGCTTTTTTCTTCTTATATAGAGAGTAATTGTGCTCGGCGCTCATGTAAGCAGTCTCCAGAAACAGGAAAACGAATTCGCAACATGTCAAGAAAGAGATTCCGCACCAGAGACCCAACTGTCCACCGAAATCAGCTAACAAGTTGACGAACTGAAAGAAAACGGATTAAAAAAGGCAAGTTAGAAGTTAAGCGCACTCCATAAGCCTCAGATTCGGTGAGCATTTCGAAATTGAGCTGTTCATAGAACACTTCAACCATTGCGCCGTTCTCTCTGAAAATCGTAACTCCAAAAATGTTTCAGAAAAGTTATCAGTTACTTGTAATGCTTATTGCACTCCACCGCAGTACCATTACACGATCCCAGCTGGATTTGAAGAGA</canonical>
            <polymorphic>CAGGAGGAGCCAAGCTGTCACAGACAATGCAATTTTTTGAGATTTGCGCTGCTCTAATTGGAACTTTGGCTCGTTAAGCCTGCACAAAACACTCCATTACTCTATTCATTCCCAGATTGATTCAAAATTGGTTCAATTTTTCGTAACTTTGCTGCAAATATTTTATGCTTCGAGCAAAAAAAACATTATTTTTGACTTTTGAGACACTTCTCAATTTCCCTTTAAAACCTCAGTCCTTTAGTGCCGCTTGTTTTCTCTGAATGCCAAATTCTCCCCCACCTTTCCCTTGAAAGTTTTTTTTTTTTGAAAAAAGAATCATAACAAACTTTTCCTATATTTTAAAAATCTTGTCATTAAATTTGTGTATCTGTGAATAGACCCCTTTTCTATATGCGAGTAGTATCTATTTCTTCTCCTAAAAATGGTTTGTATCTTTTTTTATCCGTTTCATACTTTTTTTTTGTCCAGTTCAGTCAAGCTGAATCCTTTGTAATATAAGWACCCAACTACAAAAATCTATTTTTTCGTAAGATTTTTATTGTAAATGAAGGATTTCATTGTAAAAAAATATAGGTGACTTGGGTTTAGAAAGATCCGGAAGCCACTTTCTTGGCTTTTTCTGCTTTTTTCTTCTTATATAGAGAGTAATTGTGCTCGGCGCTCATGTAAGCAGTCTCCAGAAACAGGAAAACGAATTCGCAACATGTCAAGAAAGAGATTCCGCACCAGAGACCCAACTGTCCACCGAAATCAGCTAACAAGTTGACGAACTGAAAGAAAACGGATTAAAAAAGGCAAGTTAGAAGTTAAGCGCACTCCATAAGCCTCAGATTCGGTGAGCATTTCGAAATTGAGCTGTTCATAGAACACTTCAACCATTGCGCCGTTCTCTCTGAAAATCGTAACTCCAAAAATGTTTCAGAAAAGTTATCAGTTACTTGTAATGCTTATTGCACTCCACCGCAGTACCATTACACGATCCCAGCTGGATTTGAAGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTGTCATTAAATTTGTGTATCTG</pcr_primer_p1>
		<pcr_primer_p2>CTTTCTAAACCCAAGTCACCTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTTGTCATTAAATTTGTGTATCTGTGAATAGACCCCTTTTCTATATGCGAGTAGTATCTATTTCTTCTCCTAAAAATGGTTTGTATCTTTTTTTATCCGTTTCATACTTTTTTTTTGTCCAGTTCAGTCAAGCTGAATCCTTTGTAATATAAGAACCCAACTACAAAAATCTATTTTTTCGTAAGATTTTTATTGTAAATGAAGGATTTCATTGTAAAAAAATATAGGTGACTTGGGTTTAGAAAG</canonical_amplicon>
		<polymorphic_amplicon>TCTTGTCATTAAATTTGTGTATCTGTGAATAGACCCCTTTTCTATATGCGAGTAGTATCTATTTCTTCTCCTAAAAATGGTTTGTATCTTTTTTTATCCGTTTCATACTTTTTTTTTGTCCAGTTCAGTCAAGCTGAATCCTTTGTAATATAAGWACCCAACTACAAAAATCTATTTTTTCGTAAGATTTTTATTGTAAATGAAGGATTTCATTGTAAAAAAATATAGGTGACTTGGGTTTAGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21432</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>663768</contig_pos>
        <strand>+</strand>
        <context>TGGCTAATAG[A/C]TCCCTTGGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGAAACTAGGCGAAGAATTAATGTCTGCTAAGATACAGCTGGCTAATAG</left_flank>
        <right_flank>TCCCTTGGAGAATCTAGGATGCTAACCTTGTTGGCGAATTTATGATCCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCGTAAAGATGTTCCGGATTAATTTCTGAAGTTTTAGAATGGACAATTATTGGAGATTCGGAAGTGTAACTCGTGCCACGAGCCATCAGAAATAATGAAAATAATCTCAATGGTGGATTCAGATAGCTTCGGGTAGGTTGGAAGATATGCTATCAAAAATCAAGTTTCATTTCTCAGAAACTATCTCATAATGAGAGACATAGCTCACGGAATGAATAAGCCACGAATCATCGACTTGAAACTCGGAACTCGTACCCACAGCGATTTCATATCCGAAGAGAAAAAAGCGTTACACATCCGCAAAAGTGTCCTTACAACGACGTCCTCGCTCGGAATTCGTCTGTGCGGCGCCCGTTTCACCGGGAAGGACGATCGACAGGAGACTCAATGGACAAAAGGCCTTGGTAAAACTCATCATTAATATTATTACGAAACACCTGTCCTAAACATGAAACTAGGCGAAGAATTAATGTCTGCTAAGATACAGCTGGCTAATAGATCCCTTGGAGAATCTAGGATGCTAACCTTGTTGGCGAATTTATGATCCTAGAGCCTTGTGGAGAGTCAGAGGGACCAGTTGAAACTAAACATTGTACAACACAAAAACAATTTCAGGGAAGACCATGTCCAATGAAAAATTTTGGAATGCAATGAAGATATTCTTCGATATCCCGCAAACCCAGAAATTTTCTGTCATCCGCCAGCTCTTGAAGATCAGAGCGGTCATTGAATCCAGTCCCACTCATCGCTACTTCGGATGCTCAATTCTCATTATTATCGATGATGAAGAGGAATGCCACGTCCACACAAAGCTGATTGATTTCGCTAGTATGGCTCGCTCGGAAGTGGACACCCCACAGTACGAGGATGTCGATGAGGGAGCCATGATGGGAGTCAACAACCTCCTCCAGATTCTCAATGCTTGAGGTAGCTCGTAGATCATTCAAAACTTTTTTTAATCCACTCAGTTTTCTTGTTCACTGGTTGAAATTGTTCCCC</canonical>
            <polymorphic>CTCGTAAAGATGTTCCGGATTAATTTCTGAAGTTTTAGAATGGACAATTATTGGAGATTCGGAAGTGTAACTCGTGCCACGAGCCATCAGAAATAATGAAAATAATCTCAATGGTGGATTCAGATAGCTTCGGGTAGGTTGGAAGATATGCTATCAAAAATCAAGTTTCATTTCTCAGAAACTATCTCATAATGAGAGACATAGCTCACGGAATGAATAAGCCACGAATCATCGACTTGAAACTCGGAACTCGTACCCACAGCGATTTCATATCCGAAGAGAAAAAAGCGTTACACATCCGCAAAAGTGTCCTTACAACGACGTCCTCGCTCGGAATTCGTCTGTGCGGCGCCCGTTTCACCGGGAAGGACGATCGACAGGAGACTCAATGGACAAAAGGCCTTGGTAAAACTCATCATTAATATTATTACGAAACACCTGTCCTAAACATGAAACTAGGCGAAGAATTAATGTCTGCTAAGATACAGCTGGCTAATAGMTCCCTTGGAGAATCTAGGATGCTAACCTTGTTGGCGAATTTATGATCCTAGAGCCTTGTGGAGAGTCAGAGGGACCAGTTGAAACTAAACATTGTACAACACAAAAACAATTTCAGGGAAGACCATGTCCAATGAAAAATTTTGGAATGCAATGAAGATATTCTTCGATATCCCGCAAACCCAGAAATTTTCTGTCATCCGCCAGCTCTTGAAGATCAGAGCGGTCATTGAATCCAGTCCCACTCATCGCTACTTCGGATGCTCAATTCTCATTATTATCGATGATGAAGAGGAATGCCACGTCCACACAAAGCTGATTGATTTCGCTAGTATGGCTCGCTCGGAAGTGGACACCCCACAGTACGAGGATGTCGATGAGGGAGCCATGATGGGAGTCAACAACCTCCTCCAGATTCTCAATGCTTGAGGTAGCTCGTAGATCATTCAAAACTTTTTTTAATCCACTCAGTTTTCTTGTTCACTGGTTGAAATTGTTCCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>371 225 170 127 62 45</canonical_bands>
                <polymorphic_bands>371 225 172 170 62</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTATTACGAAACACCTGTCCT</pcr_primer_p1>
		<pcr_primer_p2>TATCTTCATTGCATTCCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TATTATTACGAAACACCTGTCCTAAACATGAAACTAGGCGAAGAATTAATGTCTGCTAAGATACAGCTGGCTAATAGATCCCTTGGAGAATCTAGGATGCTAACCTTGTTGGCGAATTTATGATCCTAGAGCCTTGTGGAGAGTCAGAGGGACCAGTTGAAACTAAACATTGTACAACACAAAAACAATTTCAGGGAAGACCATGTCCAATGAAAAATTTTGGAATGCAATGAAGATA</canonical_amplicon>
		<polymorphic_amplicon>TATTATTACGAAACACCTGTCCTAAACATGAAACTAGGCGAAGAATTAATGTCTGCTAAGATACAGCTGGCTAATAGMTCCCTTGGAGAATCTAGGATGCTAACCTTGTTGGCGAATTTATGATCCTAGAGCCTTGTGGAGAGTCAGAGGGACCAGTTGAAACTAAACATTGTACAACACAAAAACAATTTCAGGGAAGACCATGTCCAATGAAAAATTTTGGAATGCAATGAAGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21435</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>664389</contig_pos>
        <strand>+</strand>
        <context>TTGAACCTCC[C/T]CGAATTTTTY</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCTTCTAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCC</left_flank>
        <right_flank>CGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTC</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCATGTCCAATGAAAAATTTTGGAATGCAATGAAGATATTCTTCGATATCCCGCAAACCCAGAAATTTTCTGTCATCCGCCAGCTCTTGAAGATCAGAGCGGTCATTGAATCCAGTCCCACTCATCGCTACTTCGGATGCTCAATTCTCATTATTATCGATGATGAAGAGGAATGCCACGTCCACACAAAGCTGATTGATTTCGCTAGTATGGCTCGCTCGGAAGTGGACACCCCACAGTACGAGGATGTCGATGAGGGAGCCATGATGGGAGTCAACAACCTCCTCCAGATTCTCAATGCTTGAGGTAGCTCGTAGATCATTCAAAACTTTTTTTAATCCACTCAGTTTTCTTGTTCACTGGTTGAAATTGTTCCCCACCGCATAACTTTTCATTATGAAACCAATTTTGAATTTGATAGTTGTTCCAAATTCAAAACAAACTTCCCTTTCTTCTAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCA</canonical>
            <polymorphic>ACCATGTCCAATGAAAAATTTTGGAATGCAATGAAGATATTCTTCGATATCCCGCAAACCCAGAAATTTTCTGTCATCCGCCAGCTCTTGAAGATCAGAGCGGTCATTGAATCCAGTCCCACTCATCGCTACTTCGGATGCTCAATTCTCATTATTATCGATGATGAAGAGGAATGCCACGTCCACACAAAGCTGATTGATTTCGCTAGTATGGCTCGCTCGGAAGTGGACACCCCACAGTACGAGGATGTCGATGAGGGAGCCATGATGGGAGTCAACAACCTCCTCCAGATTCTCAATGCTTGAGGTAGCTCGTAGATCATTCAAAACTTTTTTTAATCCACTCAGTTTTCTTGTTCACTGGTTGAAATTGTTCCCCACCGCATAACTTTTCATTATGAAACCAATTTTGAATTTGATAGTTGTTCCAAATTCAAAACAAACTTCCCTTTCTTCTAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCYCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 249 114 93 45</canonical_bands>
                <polymorphic_bands>748 114 93 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATTATGAAACCAATTTTGAAT</pcr_primer_p1>
		<pcr_primer_p2>GGACTTTTTCATCTAGTGCTAGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCATTATGAAACCAATTTTGAATTTGATAGTTGTTCCAAATTCAAAACAAACTTCCCTTTCTTCTAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCC</canonical_amplicon>
		<polymorphic_amplicon>TCATTATGAAACCAATTTTGAATTTGATAGTTGTTCCAAATTCAAAACAAACTTCCCTTTCTTCTAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCYCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21436</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>664399</contig_pos>
        <strand>+</strand>
        <context>YCGAATTTTT[C/T]AAAGACGCGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTT</left_flank>
        <right_flank>AAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAAAAATTTTGGAATGCAATGAAGATATTCTTCGATATCCCGCAAACCCAGAAATTTTCTGTCATCCGCCAGCTCTTGAAGATCAGAGCGGTCATTGAATCCAGTCCCACTCATCGCTACTTCGGATGCTCAATTCTCATTATTATCGATGATGAAGAGGAATGCCACGTCCACACAAAGCTGATTGATTTCGCTAGTATGGCTCGCTCGGAAGTGGACACCCCACAGTACGAGGATGTCGATGAGGGAGCCATGATGGGAGTCAACAACCTCCTCCAGATTCTCAATGCTTGAGGTAGCTCGTAGATCATTCAAAACTTTTTTTAATCCACTCAGTTTTCTTGTTCACTGGTTGAAATTGTTCCCCACCGCATAACTTTTCATTATGAAACCAATTTTGAATTTGATAGTTGTTCCAAATTCAAAACAAACTTCCCTTTCTTCTAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACA</canonical>
            <polymorphic>ATGAAAAATTTTGGAATGCAATGAAGATATTCTTCGATATCCCGCAAACCCAGAAATTTTCTGTCATCCGCCAGCTCTTGAAGATCAGAGCGGTCATTGAATCCAGTCCCACTCATCGCTACTTCGGATGCTCAATTCTCATTATTATCGATGATGAAGAGGAATGCCACGTCCACACAAAGCTGATTGATTTCGCTAGTATGGCTCGCTCGGAAGTGGACACCCCACAGTACGAGGATGTCGATGAGGGAGCCATGATGGGAGTCAACAACCTCCTCCAGATTCTCAATGCTTGAGGTAGCTCGTAGATCATTCAAAACTTTTTTTAATCCACTCAGTTTTCTTGTTCACTGGTTGAAATTGTTCCCCACCGCATAACTTTTCATTATGAAACCAATTTTGAATTTGATAGTTGTTCCAAATTCAAAACAAACTTCCCTTTCTTCTAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTTYAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTATGAAACCAATTTTGAAT</pcr_primer_p1>
		<pcr_primer_p2>GGACTTTTTCATCTAGTGCTAGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCATTATGAAACCAATTTTGAATTTGATAGTTGTTCCAAATTCAAAACAAACTTCCCTTTCTTCTAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCC</canonical_amplicon>
		<polymorphic_amplicon>TCATTATGAAACCAATTTTGAATTTGATAGTTGTTCCAAATTCAAAACAAACTTCCCTTTCTTCTAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTTYAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21437</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>664546</contig_pos>
        <strand>+</strand>
        <context>TCTTAATTCT[A/T]GAAATAGTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCT</left_flank>
        <right_flank>GAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGATGATGAAGAGGAATGCCACGTCCACACAAAGCTGATTGATTTCGCTAGTATGGCTCGCTCGGAAGTGGACACCCCACAGTACGAGGATGTCGATGAGGGAGCCATGATGGGAGTCAACAACCTCCTCCAGATTCTCAATGCTTGAGGTAGCTCGTAGATCATTCAAAACTTTTTTTAATCCACTCAGTTTTCTTGTTCACTGGTTGAAATTGTTCCCCACCGCATAACTTTTCATTATGAAACCAATTTTGAATTTGATAGTTGTTCCAAATTCAAAACAAACTTCCCTTTCTTCTAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGAATATATCGCTGCTCTTCCACCTAGAACCTAATCAATCTGGGTGCCTCCACAAAACCATCAAAATC</canonical>
            <polymorphic>TCGATGATGAAGAGGAATGCCACGTCCACACAAAGCTGATTGATTTCGCTAGTATGGCTCGCTCGGAAGTGGACACCCCACAGTACGAGGATGTCGATGAGGGAGCCATGATGGGAGTCAACAACCTCCTCCAGATTCTCAATGCTTGAGGTAGCTCGTAGATCATTCAAAACTTTTTTTAATCCACTCAGTTTTCTTGTTCACTGGTTGAAATTGTTCCCCACCGCATAACTTTTCATTATGAAACCAATTTTGAATTTGATAGTTGTTCCAAATTCAAAACAAACTTCCCTTTCTTCTAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTWGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGAATATATCGCTGCTCTTCCACCTAGAACCTAATCAATCTGGGTGCCTCCACAAAACCATCAAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>458 415 49 44 28 6</canonical_bands>
                <polymorphic_bands>486 415 49 44 6</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCTCAAATTGGAAAAATGT</pcr_primer_p1>
		<pcr_primer_p2>ACAAGGACTGGTGAGTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>TTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGT</canonical_amplicon>
		<polymorphic_amplicon>TTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTWGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21438</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>664694</contig_pos>
        <strand>+</strand>
        <context>aTCTCCCATA[A/T]AAGGTGTCAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATA</left_flank>
        <right_flank>AAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTAGCTCGTAGATCATTCAAAACTTTTTTTAATCCACTCAGTTTTCTTGTTCACTGGTTGAAATTGTTCCCCACCGCATAACTTTTCATTATGAAACCAATTTTGAATTTGATAGTTGTTCCAAATTCAAAACAAACTTCCCTTTCTTCTAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGAATATATCGCTGCTCTTCCACCTAGAACCTAATCAATCTGGGTGCCTCCACAAAACCATCAAAATCAAACGAAGGAGAGCCGAGAGACCCAAATGAAAAAAAGTGCTTCTAGGGTAGTGGCGGGGGCGCCTTCTCATTTCCATTTAGCTTCCTTTCTCTTTTCTTCCATTTAGAAGAACGGCTCCTGAAGAGGCTTTCCCATCTGCTCTTATTC</canonical>
            <polymorphic>AGGTAGCTCGTAGATCATTCAAAACTTTTTTTAATCCACTCAGTTTTCTTGTTCACTGGTTGAAATTGTTCCCCACCGCATAACTTTTCATTATGAAACCAATTTTGAATTTGATAGTTGTTCCAAATTCAAAACAAACTTCCCTTTCTTCTAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAWAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGAATATATCGCTGCTCTTCCACCTAGAACCTAATCAATCTGGGTGCCTCCACAAAACCATCAAAATCAAACGAAGGAGAGCCGAGAGACCCAAATGAAAAAAAGTGCTTCTAGGGTAGTGGCGGGGGCGCCTTCTCATTTCCATTTAGCTTCCTTTCTCTTTTCTTCCATTTAGAAGAACGGCTCCTGAAGAGGCTTTCCCATCTGCTCTTATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGACTAGCACTAGATGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGTTAAGCAGAGGATTACAACAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACT</canonical_amplicon>
		<polymorphic_amplicon>TGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAWAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21439</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>664757</contig_pos>
        <strand>+</strand>
        <context>CTTAACTATT[A/G]TCCGTTTMTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATT</left_flank>
        <right_flank>TCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGTTCCCCACCGCATAACTTTTCATTATGAAACCAATTTTGAATTTGATAGTTGTTCCAAATTCAAAACAAACTTCCCTTTCTTCTAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGAATATATCGCTGCTCTTCCACCTAGAACCTAATCAATCTGGGTGCCTCCACAAAACCATCAAAATCAAACGAAGGAGAGCCGAGAGACCCAAATGAAAAAAAGTGCTTCTAGGGTAGTGGCGGGGGCGCCTTCTCATTTCCATTTAGCTTCCTTTCTCTTTTCTTCCATTTAGAAGAACGGCTCCTGAAGAGGCTTTCCCATCTGCTCTTATTCCGCTCTCTCAGCACTTTTTGACCCAGCGCCTGCCACCATCTTATTCTCATTTTCACTTTCTTT</canonical>
            <polymorphic>AATTGTTCCCCACCGCATAACTTTTCATTATGAAACCAATTTTGAATTTGATAGTTGTTCCAAATTCAAAACAAACTTCCCTTTCTTCTAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTRTCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGAATATATCGCTGCTCTTCCACCTAGAACCTAATCAATCTGGGTGCCTCCACAAAACCATCAAAATCAAACGAAGGAGAGCCGAGAGACCCAAATGAAAAAAAGTGCTTCTAGGGTAGTGGCGGGGGCGCCTTCTCATTTCCATTTAGCTTCCTTTCTCTTTTCTTCCATTTAGAAGAACGGCTCCTGAAGAGGCTTTCCCATCTGCTCTTATTCCGCTCTCTCAGCACTTTTTGACCCAGCGCCTGCCACCATCTTATTCTCATTTTCACTTTCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTAGCACTAGATGAAAAAGTCCT</pcr_primer_p1>
		<pcr_primer_p2>CTTGTTTTAAAATGGGTACTGTAA</pcr_primer_p2>
		<pcr_amplicon_size>393</pcr_amplicon_size>
		<canonical_amplicon>ACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAG</canonical_amplicon>
		<polymorphic_amplicon>ACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTRTCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21440</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>664765</contig_pos>
        <strand>+</strand>
        <context>TTRTCCGTTT[A/C]TGTCCTTYCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTT</left_flank>
        <right_flank>TGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCACCGCATAACTTTTCATTATGAAACCAATTTTGAATTTGATAGTTGTTCCAAATTCAAAACAAACTTCCCTTTCTTCTAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGAATATATCGCTGCTCTTCCACCTAGAACCTAATCAATCTGGGTGCCTCCACAAAACCATCAAAATCAAACGAAGGAGAGCCGAGAGACCCAAATGAAAAAAAGTGCTTCTAGGGTAGTGGCGGGGGCGCCTTCTCATTTCCATTTAGCTTCCTTTCTCTTTTCTTCCATTTAGAAGAACGGCTCCTGAAGAGGCTTTCCCATCTGCTCTTATTCCGCTCTCTCAGCACTTTTTGACCCAGCGCCTGCCACCATCTTATTCTCATTTTCACTTTCTTTCTGGCTTC</canonical>
            <polymorphic>CCCACCGCATAACTTTTCATTATGAAACCAATTTTGAATTTGATAGTTGTTCCAAATTCAAAACAAACTTCCCTTTCTTCTAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTMTGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGAATATATCGCTGCTCTTCCACCTAGAACCTAATCAATCTGGGTGCCTCCACAAAACCATCAAAATCAAACGAAGGAGAGCCGAGAGACCCAAATGAAAAAAAGTGCTTCTAGGGTAGTGGCGGGGGCGCCTTCTCATTTCCATTTAGCTTCCTTTCTCTTTTCTTCCATTTAGAAGAACGGCTCCTGAAGAGGCTTTCCCATCTGCTCTTATTCCGCTCTCTCAGCACTTTTTGACCCAGCGCCTGCCACCATCTTATTCTCATTTTCACTTTCTTTCTGGCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTCCTTGTCGTAGCTGTT</pcr_primer_p1>
		<pcr_primer_p2>TCTTCTTGATAAATGTTGTCTTCA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGA</canonical_amplicon>
		<polymorphic_amplicon>CAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTMTGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21441</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>664773</contig_pos>
        <strand>+</strand>
        <context>TTMTGTCCTT[C/T]CTTGATGTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTT</left_flank>
        <right_flank>CTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAACTTTTCATTATGAAACCAATTTTGAATTTGATAGTTGTTCCAAATTCAAAACAAACTTCCCTTTCTTCTAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGAATATATCGCTGCTCTTCCACCTAGAACCTAATCAATCTGGGTGCCTCCACAAAACCATCAAAATCAAACGAAGGAGAGCCGAGAGACCCAAATGAAAAAAAGTGCTTCTAGGGTAGTGGCGGGGGCGCCTTCTCATTTCCATTTAGCTTCCTTTCTCTTTTCTTCCATTTAGAAGAACGGCTCCTGAAGAGGCTTTCCCATCTGCTCTTATTCCGCTCTCTCAGCACTTTTTGACCCAGCGCCTGCCACCATCTTATTCTCATTTTCACTTTCTTTCTGGCTTCTCCCTGTG</canonical>
            <polymorphic>ATAACTTTTCATTATGAAACCAATTTTGAATTTGATAGTTGTTCCAAATTCAAAACAAACTTCCCTTTCTTCTAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTYCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGAATATATCGCTGCTCTTCCACCTAGAACCTAATCAATCTGGGTGCCTCCACAAAACCATCAAAATCAAACGAAGGAGAGCCGAGAGACCCAAATGAAAAAAAGTGCTTCTAGGGTAGTGGCGGGGGCGCCTTCTCATTTCCATTTAGCTTCCTTTCTCTTTTCTTCCATTTAGAAGAACGGCTCCTGAAGAGGCTTTCCCATCTGCTCTTATTCCGCTCTCTCAGCACTTTTTGACCCAGCGCCTGCCACCATCTTATTCTCATTTTCACTTTCTTTCTGGCTTCTCCCTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCCTTGTCGTAGCTGTTGTA</pcr_primer_p1>
		<pcr_primer_p2>TTCTTCTTGATAAATGTTGTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAA</canonical_amplicon>
		<polymorphic_amplicon>GTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTYCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21442</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>664830</contig_pos>
        <strand></strand>
        <context>AGTCTGTATG[G/T]KGACAACAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATG</left_flank>
        <right_flank>TGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTTCCCTTTCTTCTAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGAATATATCGCTGCTCTTCCACCTAGAACCTAATCAATCTGGGTGCCTCCACAAAACCATCAAAATCAAACGAAGGAGAGCCGAGAGACCCAAATGAAAAAAAGTGCTTCTAGGGTAGTGGCGGGGGCGCCTTCTCATTTCCATTTAGCTTCCTTTCTCTTTTCTTCCATTTAGAAGAACGGCTCCTGAAGAGGCTTTCCCATCTGCTCTTATTCCGCTCTCTCAGCACTTTTTGACCCAGCGCCTGCCACCATCTTATTCTCATTTTCACTTTCTTTCTGGCTTCTCCCTGTGTGCCCAAACCAAAAAAAGTGCGAACGAAGAGAGGATCTCTTCCGTTTGCGCCCACCC</canonical>
            <polymorphic>AACTTCCCTTTCTTCTAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGKTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGAATATATCGCTGCTCTTCCACCTAGAACCTAATCAATCTGGGTGCCTCCACAAAACCATCAAAATCAAACGAAGGAGAGCCGAGAGACCCAAATGAAAAAAAGTGCTTCTAGGGTAGTGGCGGGGGCGCCTTCTCATTTCCATTTAGCTTCCTTTCTCTTTTCTTCCATTTAGAAGAACGGCTCCTGAAGAGGCTTTCCCATCTGCTCTTATTCCGCTCTCTCAGCACTTTTTGACCCAGCGCCTGCCACCATCTTATTCTCATTTTCACTTTCTTTCTGGCTTCTCCCTGTGTGCCCAAACCAAAAAAAGTGCGAACGAAGAGAGGATCTCTTCCGTTTGCGCCCACCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>120 118 108 99 70 63 55 40 39 38 34 30 24 24 22 20 20 18 14 11 9 7 6 3 3 3 2</canonical_bands>
                <polymorphic_bands>217 120 108 70 63 55 40 39 38 34 30 24 24 22 20 20 18 14 11 9 7 6 3 3 3 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>454 175 130 129 65 47</canonical_bands>
                <polymorphic_bands>454 177 175 129 65</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>501 175 130 129 65</canonical_bands>
                <polymorphic_bands>631 175 129 65</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTTGTAATCCTCTGCTTAACT</pcr_primer_p1>
		<pcr_primer_p2>TCTGAGCTATACACTTCTTCTTGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGA</canonical_amplicon>
		<polymorphic_amplicon>CTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGKTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21458</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>664864</contig_pos>
        <strand>+</strand>
        <context>ataataataa[A/C]atttaGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAA</left_flank>
        <right_flank>ATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCACTAATGATCATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGAATATATCGCTGCTCTTCCACCTAGAACCTAATCAATCTGGGTGCCTCCACAAAACCATCAAAATCAAACGAAGGAGAGCCGAGAGACCCAAATGAAAAAAAGTGCTTCTAGGGTAGTGGCGGGGGCGCCTTCTCATTTCCATTTAGCTTCCTTTCTCTTTTCTTCCATTTAGAAGAACGGCTCCTGAAGAGGCTTTCCCATCTGCTCTTATTCCGCTCTCTCAGCACTTTTTGACCCAGCGCCTGCCACCATCTTATTCTCATTTTCACTTTCTTTCTGGCTTCTCCCTGTGTGCCCAAACCAAAAAAAGTGCGAACGAAGAGAGGATCTCTTCCGTTTGCGCCCACCCGTCTTACTCTTCCCCAGATTGATGCCATTTCGAA</canonical>
            <polymorphic>TCCACTAATGATCATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAMATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGAATATATCGCTGCTCTTCCACCTAGAACCTAATCAATCTGGGTGCCTCCACAAAACCATCAAAATCAAACGAAGGAGAGCCGAGAGACCCAAATGAAAAAAAGTGCTTCTAGGGTAGTGGCGGGGGCGCCTTCTCATTTCCATTTAGCTTCCTTTCTCTTTTCTTCCATTTAGAAGAACGGCTCCTGAAGAGGCTTTCCCATCTGCTCTTATTCCGCTCTCTCAGCACTTTTTGACCCAGCGCCTGCCACCATCTTATTCTCATTTTCACTTTCTTTCTGGCTTCTCCCTGTGTGCCCAAACCAAAAAAAGTGCGAACGAAGAGAGGATCTCTTCCGTTTGCGCCCACCCGTCTTACTCTTCCCCAGATTGATGCCATTTCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>442 404 68 59 27</canonical_bands>
                <polymorphic_bands>463 442 68 27</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>442 186 76 71 62 60 59 27 9 8</canonical_bands>
                <polymorphic_bands>442 186 135 71 62 60 27 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTTGTAATCCTCTGCTTAACT</pcr_primer_p1>
		<pcr_primer_p2>TCTGAGCTATACACTTCTTCTTGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGA</canonical_amplicon>
		<polymorphic_amplicon>CTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAMATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21460</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>664876</contig_pos>
        <strand></strand>
        <context>tttaGAAAAG[A/C]GTTACAGTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAG</left_flank>
        <right_flank>GTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGAATATATCGCTGCTCTTCCACCTAGAACCTAATCAATCTGGGTGCCTCCACAAAACCATCAAAATCAAACGAAGGAGAGCCGAGAGACCCAAATGAAAAAAAGTGCTTCTAGGGTAGTGGCGGGGGCGCCTTCTCATTTCCATTTAGCTTCCTTTCTCTTTTCTTCCATTTAGAAGAACGGCTCCTGAAGAGGCTTTCCCATCTGCTCTTATTCCGCTCTCTCAGCACTTTTTGACCCAGCGCCTGCCACCATCTTATTCTCATTTTCACTTTCTTTCTGGCTTCTCCCTGTGTGCCCAAACCAAAAAAAGTGCGAACGAAGAGAGGATCTCTTCCGTTTGCGCCCACCCGTCTTACTCTTCCCCAGATTGATGCCATTTCGAAGACTCTTCTCCC</canonical>
            <polymorphic>CATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGMGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGAATATATCGCTGCTCTTCCACCTAGAACCTAATCAATCTGGGTGCCTCCACAAAACCATCAAAATCAAACGAAGGAGAGCCGAGAGACCCAAATGAAAAAAAGTGCTTCTAGGGTAGTGGCGGGGGCGCCTTCTCATTTCCATTTAGCTTCCTTTCTCTTTTCTTCCATTTAGAAGAACGGCTCCTGAAGAGGCTTTCCCATCTGCTCTTATTCCGCTCTCTCAGCACTTTTTGACCCAGCGCCTGCCACCATCTTATTCTCATTTTCACTTTCTTTCTGGCTTCTCCCTGTGTGCCCAAACCAAAAAAAGTGCGAACGAAGAGAGGATCTCTTCCGTTTGCGCCCACCCGTCTTACTCTTCCCCAGATTGATGCCATTTCGAAGACTCTTCTCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTTGTAATCCTCTGCTTAACT</pcr_primer_p1>
		<pcr_primer_p2>TCTGAGCTATACACTTCTTCTTGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGA</canonical_amplicon>
		<polymorphic_amplicon>CTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGMGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21461</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>664917</contig_pos>
        <strand>+</strand>
        <context>GAAATCATAT[C/T]TCAAAMATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATAT</left_flank>
        <right_flank>TCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGAATATATCGCTGCTCTTCCACCTAGAACCTAATCAATCTGGGTGCCTCCACAAAACCATCAAAATCAAACGAAGGAGAGCCGAGAGACCCAAATGAAAAAAAGTGCTTCTAGGGTAGTGGCGGGGGCGCCTTCTCATTTCCATTTAGCTTCCTTTCTCTTTTCTTCCATTTAGAAGAACGGCTCCTGAAGAGGCTTTCCCATCTGCTCTTATTCCGCTCTCTCAGCACTTTTTGACCCAGCGCCTGCCACCATCTTATTCTCATTTTCACTTTCTTTCTGGCTTCTCCCTGTGTGCCCAAACCAAAAAAAGTGCGAACGAAGAGAGGATCTCTTCCGTTTGCGCCCACCCGTCTTACTCTTCCCCAGATTGATGCCATTTCGAAGACTCTTCTCCCGTTTTCGGTAGTGCCCCTCGCTTTCTCTGACTCTCTTTCTC</canonical>
            <polymorphic>TATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATYTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGAATATATCGCTGCTCTTCCACCTAGAACCTAATCAATCTGGGTGCCTCCACAAAACCATCAAAATCAAACGAAGGAGAGCCGAGAGACCCAAATGAAAAAAAGTGCTTCTAGGGTAGTGGCGGGGGCGCCTTCTCATTTCCATTTAGCTTCCTTTCTCTTTTCTTCCATTTAGAAGAACGGCTCCTGAAGAGGCTTTCCCATCTGCTCTTATTCCGCTCTCTCAGCACTTTTTGACCCAGCGCCTGCCACCATCTTATTCTCATTTTCACTTTCTTTCTGGCTTCTCCCTGTGTGCCCAAACCAAAAAAAGTGCGAACGAAGAGAGGATCTCTTCCGTTTGCGCCCACCCGTCTTACTCTTCCCCAGATTGATGCCATTTCGAAGACTCTTCTCCCGTTTTCGGTAGTGCCCCTCGCTTTCTCTGACTCTCTTTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTTGTAATCCTCTGCTTAACT</pcr_primer_p1>
		<pcr_primer_p2>TCTGAGCTATACACTTCTTCTTGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGA</canonical_amplicon>
		<polymorphic_amplicon>CTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATYTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21462</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>666031</contig_pos>
        <strand>+</strand>
        <context>TACGTGTCCA[A/C]AAAAAAATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCA</left_flank>
        <right_flank>AAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGAAGAGAAAACAAAAACCGGTGGGATAGAGAAAACGACAAAGAATTGCAAATTAGAAATTAACACAAACTGGTGTTAGATACCATCCAAAATATCACCAAAAATTGCGTGTGCAAAGTACAGCCAAAGGGAGAAGAGTTGCAGGAAATTGGGGGAGAAATGATTGAGTGATGACTAGACTAAAACATTTCGGAAATTTGGAATACAATGGGACGGGAGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAACCATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCACAAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTATAAAAAAAAACATTGTAAGGAAAACCTACTGAAAACCCAAGTCAGGAATTCAATAGCACTGAAAAAAGAGTATGGACTTGAAGGGGGGATGAATGACTTAGAAACATATATCACAACTTGTTGTCTCGAGAAGAATCTTAAGATGAAAAAATTGAGCTCTAATCATATGGGAGCATAAGGGAAAAAACAACAATATGCCTAGAAGATGGAAAAATCCTATGGCGAGAGGCA</canonical>
            <polymorphic>ACGAAGAGAAAACAAAAACCGGTGGGATAGAGAAAACGACAAAGAATTGCAAATTAGAAATTAACACAAACTGGTGTTAGATACCATCCAAAATATCACCAAAAATTGCGTGTGCAAAGTACAGCCAAAGGGAGAAGAGTTGCAGGAAATTGGGGGAGAAATGATTGAGTGATGACTAGACTAAAACATTTCGGAAATTTGGAATACAATGGGACGGGAGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAACCATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCAMAAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTATAAAAAAAAACATTGTAAGGAAAACCTACTGAAAACCCAAGTCAGGAATTCAATAGCACTGAAAAAAGAGTATGGACTTGAAGGGGGGATGAATGACTTAGAAACATATATCACAACTTGTTGTCTCGAGAAGAATCTTAAGATGAAAAAATTGAGCTCTAATCATATGGGAGCATAAGGGAAAAAACAACAATATGCCTAGAAGATGGAAAAATCCTATGGCGAGAGGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>123 118 108 66 63 63 57 56 55 55 42 33 28 24 22 18 16 14 14 10 9 4 2</canonical_bands>
                <polymorphic_bands>123 118 108 66 63 63 60 57 55 55 42 33 28 24 22 18 16 14 14 10 9 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>418 387 116 79</canonical_bands>
                <polymorphic_bands>418 387 195</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCACTTGATACACCAACTAAG</pcr_primer_p1>
		<pcr_primer_p2>CCATTGTAAAAAGGTGAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCACAAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGG</canonical_amplicon>
		<polymorphic_amplicon>TTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCAMAAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21463</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>665819</contig_pos>
        <strand>+</strand>
        <context>TAAATGATAC[A/C]TTATCACTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGCAGTTTTCGTTTTCTGGAAAAAAGCAACCATTCTTCATAAATGATAC</left_flank>
        <right_flank>TTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCGCCCACCCGTCTTACTCTTCCCCAGATTGATGCCATTTCGAAGACTCTTCTCCCGTTTTCGGTAGTGCCCCTCGCTTTCTCTGACTCTCTTTCTCTTTTTTTTTGTCTGAAGTAGAAGCTCGCCACGGACAACCGGGAGAGGACTGCAAAATGTCATTTTTTATGAACATTTTCTGACGTACAGCAGGGTGCATCACGTTGGTTTCTAAACGAAGAGAAAACAAAAACCGGTGGGATAGAGAAAACGACAAAGAATTGCAAATTAGAAATTAACACAAACTGGTGTTAGATACCATCCAAAATATCACCAAAAATTGCGTGTGCAAAGTACAGCCAAAGGGAGAAGAGTTGCAGGAAATTGGGGGAGAAATGATTGAGTGATGACTAGACTAAAACATTTCGGAAATTTGGAATACAATGGGACGGGAGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAACCATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCACAAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTATAAAAAAAAACATTGTAAG</canonical>
            <polymorphic>TGCGCCCACCCGTCTTACTCTTCCCCAGATTGATGCCATTTCGAAGACTCTTCTCCCGTTTTCGGTAGTGCCCCTCGCTTTCTCTGACTCTCTTTCTCTTTTTTTTTGTCTGAAGTAGAAGCTCGCCACGGACAACCGGGAGAGGACTGCAAAATGTCATTTTTTATGAACATTTTCTGACGTACAGCAGGGTGCATCACGTTGGTTTCTAAACGAAGAGAAAACAAAAACCGGTGGGATAGAGAAAACGACAAAGAATTGCAAATTAGAAATTAACACAAACTGGTGTTAGATACCATCCAAAATATCACCAAAAATTGCGTGTGCAAAGTACAGCCAAAGGGAGAAGAGTTGCAGGAAATTGGGGGAGAAATGATTGAGTGATGACTAGACTAAAACATTTCGGAAATTTGGAATACAATGGGACGGGAGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAACCATTCTTCATAAATGATACMTTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCACAAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTATAAAAAAAAACATTGTAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGTTTGATAAAATGAGGAATG</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTCCCTATCAACCAGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAACCATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>AGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAACCATTCTTCATAAATGATACMTTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21464</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>665800</contig_pos>
        <strand>+</strand>
        <context>AAAAAGCAAC[A/C]ATTCTTCATA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAAC</left_flank>
        <right_flank>ATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGAGGATCTCTTCCGTTTGCGCCCACCCGTCTTACTCTTCCCCAGATTGATGCCATTTCGAAGACTCTTCTCCCGTTTTCGGTAGTGCCCCTCGCTTTCTCTGACTCTCTTTCTCTTTTTTTTTGTCTGAAGTAGAAGCTCGCCACGGACAACCGGGAGAGGACTGCAAAATGTCATTTTTTATGAACATTTTCTGACGTACAGCAGGGTGCATCACGTTGGTTTCTAAACGAAGAGAAAACAAAAACCGGTGGGATAGAGAAAACGACAAAGAATTGCAAATTAGAAATTAACACAAACTGGTGTTAGATACCATCCAAAATATCACCAAAAATTGCGTGTGCAAAGTACAGCCAAAGGGAGAAGAGTTGCAGGAAATTGGGGGAGAAATGATTGAGTGATGACTAGACTAAAACATTTCGGAAATTTGGAATACAATGGGACGGGAGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAACCATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCACAAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTA</canonical>
            <polymorphic>AGAGAGGATCTCTTCCGTTTGCGCCCACCCGTCTTACTCTTCCCCAGATTGATGCCATTTCGAAGACTCTTCTCCCGTTTTCGGTAGTGCCCCTCGCTTTCTCTGACTCTCTTTCTCTTTTTTTTTGTCTGAAGTAGAAGCTCGCCACGGACAACCGGGAGAGGACTGCAAAATGTCATTTTTTATGAACATTTTCTGACGTACAGCAGGGTGCATCACGTTGGTTTCTAAACGAAGAGAAAACAAAAACCGGTGGGATAGAGAAAACGACAAAGAATTGCAAATTAGAAATTAACACAAACTGGTGTTAGATACCATCCAAAATATCACCAAAAATTGCGTGTGCAAAGTACAGCCAAAGGGAGAAGAGTTGCAGGAAATTGGGGGAGAAATGATTGAGTGATGACTAGACTAAAACATTTCGGAAATTTGGAATACAATGGGACGGGAGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAACMATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCACAAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGGTTTGATAAAATGAGGA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTCCCTATCAACCAGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGAGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAACCATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>GGAGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAACMATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21465</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>665721</contig_pos>
        <strand>+</strand>
        <context>ACTAAAACAT[G/T]TCGGAAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGCAGGAAATTGGGGGAGAAATGATTGAGTGATGACTAGACTAAAACAT</left_flank>
        <right_flank>TCGGAAATTTGGAATACAATGGGACGGGAGGTTTGATAAAATGAGGAATG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCTGCCACCATCTTATTCTCATTTTCACTTTCTTTCTGGCTTCTCCCTGTGTGCCCAAACCAAAAAAAGTGCGAACGAAGAGAGGATCTCTTCCGTTTGCGCCCACCCGTCTTACTCTTCCCCAGATTGATGCCATTTCGAAGACTCTTCTCCCGTTTTCGGTAGTGCCCCTCGCTTTCTCTGACTCTCTTTCTCTTTTTTTTTGTCTGAAGTAGAAGCTCGCCACGGACAACCGGGAGAGGACTGCAAAATGTCATTTTTTATGAACATTTTCTGACGTACAGCAGGGTGCATCACGTTGGTTTCTAAACGAAGAGAAAACAAAAACCGGTGGGATAGAGAAAACGACAAAGAATTGCAAATTAGAAATTAACACAAACTGGTGTTAGATACCATCCAAAATATCACCAAAAATTGCGTGTGCAAAGTACAGCCAAAGGGAGAAGAGTTGCAGGAAATTGGGGGAGAAATGATTGAGTGATGACTAGACTAAAACATTTCGGAAATTTGGAATACAATGGGACGGGAGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAACCATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCACAAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTT</canonical>
            <polymorphic>GCCTGCCACCATCTTATTCTCATTTTCACTTTCTTTCTGGCTTCTCCCTGTGTGCCCAAACCAAAAAAAGTGCGAACGAAGAGAGGATCTCTTCCGTTTGCGCCCACCCGTCTTACTCTTCCCCAGATTGATGCCATTTCGAAGACTCTTCTCCCGTTTTCGGTAGTGCCCCTCGCTTTCTCTGACTCTCTTTCTCTTTTTTTTTGTCTGAAGTAGAAGCTCGCCACGGACAACCGGGAGAGGACTGCAAAATGTCATTTTTTATGAACATTTTCTGACGTACAGCAGGGTGCATCACGTTGGTTTCTAAACGAAGAGAAAACAAAAACCGGTGGGATAGAGAAAACGACAAAGAATTGCAAATTAGAAATTAACACAAACTGGTGTTAGATACCATCCAAAATATCACCAAAAATTGCGTGTGCAAAGTACAGCCAAAGGGAGAAGAGTTGCAGGAAATTGGGGGAGAAATGATTGAGTGATGACTAGACTAAAACATKTCGGAAATTTGGAATACAATGGGACGGGAGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAACCATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCACAAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAAATATCACCAAAAATTG</pcr_primer_p1>
		<pcr_primer_p2>AGAAGTTGGTTGAGAAAGTAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAAAATATCACCAAAAATTGCGTGTGCAAAGTACAGCCAAAGGGAGAAGAGTTGCAGGAAATTGGGGGAGAAATGATTGAGTGATGACTAGACTAAAACATTTCGGAAATTTGGAATACAATGGGACGGGAGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAACCATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCT</canonical_amplicon>
		<polymorphic_amplicon>CCAAAATATCACCAAAAATTGCGTGTGCAAAGTACAGCCAAAGGGAGAAGAGTTGCAGGAAATTGGGGGAGAAATGATTGAGTGATGACTAGACTAAAACATKTCGGAAATTTGGAATACAATGGGACGGGAGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAACCATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21466</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>665702</contig_pos>
        <strand>+</strand>
        <context>ATGATTGAGT[A/G]ATGACTAGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAGCCAAAGGGAGAAGAGTTGCAGGAAATTGGGGGAGAAATGATTGAGT</left_flank>
        <right_flank>ATGACTAGACTAAAACATTTCGGAAATTTGGAATACAATGGGACGGGAGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGCACTTTTTGACCCAGCGCCTGCCACCATCTTATTCTCATTTTCACTTTCTTTCTGGCTTCTCCCTGTGTGCCCAAACCAAAAAAAGTGCGAACGAAGAGAGGATCTCTTCCGTTTGCGCCCACCCGTCTTACTCTTCCCCAGATTGATGCCATTTCGAAGACTCTTCTCCCGTTTTCGGTAGTGCCCCTCGCTTTCTCTGACTCTCTTTCTCTTTTTTTTTGTCTGAAGTAGAAGCTCGCCACGGACAACCGGGAGAGGACTGCAAAATGTCATTTTTTATGAACATTTTCTGACGTACAGCAGGGTGCATCACGTTGGTTTCTAAACGAAGAGAAAACAAAAACCGGTGGGATAGAGAAAACGACAAAGAATTGCAAATTAGAAATTAACACAAACTGGTGTTAGATACCATCCAAAATATCACCAAAAATTGCGTGTGCAAAGTACAGCCAAAGGGAGAAGAGTTGCAGGAAATTGGGGGAGAAATGATTGAGTGATGACTAGACTAAAACATTTCGGAAATTTGGAATACAATGGGACGGGAGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAACCATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCACAAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTAC</canonical>
            <polymorphic>CAGCACTTTTTGACCCAGCGCCTGCCACCATCTTATTCTCATTTTCACTTTCTTTCTGGCTTCTCCCTGTGTGCCCAAACCAAAAAAAGTGCGAACGAAGAGAGGATCTCTTCCGTTTGCGCCCACCCGTCTTACTCTTCCCCAGATTGATGCCATTTCGAAGACTCTTCTCCCGTTTTCGGTAGTGCCCCTCGCTTTCTCTGACTCTCTTTCTCTTTTTTTTTGTCTGAAGTAGAAGCTCGCCACGGACAACCGGGAGAGGACTGCAAAATGTCATTTTTTATGAACATTTTCTGACGTACAGCAGGGTGCATCACGTTGGTTTCTAAACGAAGAGAAAACAAAAACCGGTGGGATAGAGAAAACGACAAAGAATTGCAAATTAGAAATTAACACAAACTGGTGTTAGATACCATCCAAAATATCACCAAAAATTGCGTGTGCAAAGTACAGCCAAAGGGAGAAGAGTTGCAGGAAATTGGGGGAGAAATGATTGAGTRATGACTAGACTAAAACATTTCGGAAATTTGGAATACAATGGGACGGGAGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAACCATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCACAAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>123 66 66 63 63 62 58 57 56 42 37 34 33 28 25 24 22 22 20 18 16 14 14 10 9 5 5 4 2 2</canonical_bands>
                <polymorphic_bands>180 66 66 63 63 62 58 56 42 37 34 33 28 25 24 22 22 20 18 16 14 14 10 9 5 5 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAAATATCACCAAAAATTG</pcr_primer_p1>
		<pcr_primer_p2>AGAAGTTGGTTGAGAAAGTAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAAAATATCACCAAAAATTGCGTGTGCAAAGTACAGCCAAAGGGAGAAGAGTTGCAGGAAATTGGGGGAGAAATGATTGAGTGATGACTAGACTAAAACATTTCGGAAATTTGGAATACAATGGGACGGGAGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAACCATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCT</canonical_amplicon>
		<polymorphic_amplicon>CCAAAATATCACCAAAAATTGCGTGTGCAAAGTACAGCCAAAGGGAGAAGAGTTGCAGGAAATTGGGGGAGAAATGATTGAGTRATGACTAGACTAAAACATTTCGGAAATTTGGAATACAATGGGACGGGAGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAACCATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21467</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>665554</contig_pos>
        <strand>+</strand>
        <context>CAAAAACCGG[G/T]GGGATAGAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAGCAGGGTGCATCACGTTGGTTTCTAAACGAAGAGAAAACAAAAACCGG</left_flank>
        <right_flank>GGGATAGAGAAAACGACAAAGAATTGCAAATTAGAAATTAACACAAACTG</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAGCCGAGAGACCCAAATGAAAAAAAGTGCTTCTAGGGTAGTGGCGGGGGCGCCTTCTCATTTCCATTTAGCTTCCTTTCTCTTTTCTTCCATTTAGAAGAACGGCTCCTGAAGAGGCTTTCCCATCTGCTCTTATTCCGCTCTCTCAGCACTTTTTGACCCAGCGCCTGCCACCATCTTATTCTCATTTTCACTTTCTTTCTGGCTTCTCCCTGTGTGCCCAAACCAAAAAAAGTGCGAACGAAGAGAGGATCTCTTCCGTTTGCGCCCACCCGTCTTACTCTTCCCCAGATTGATGCCATTTCGAAGACTCTTCTCCCGTTTTCGGTAGTGCCCCTCGCTTTCTCTGACTCTCTTTCTCTTTTTTTTTGTCTGAAGTAGAAGCTCGCCACGGACAACCGGGAGAGGACTGCAAAATGTCATTTTTTATGAACATTTTCTGACGTACAGCAGGGTGCATCACGTTGGTTTCTAAACGAAGAGAAAACAAAAACCGGTGGGATAGAGAAAACGACAAAGAATTGCAAATTAGAAATTAACACAAACTGGTGTTAGATACCATCCAAAATATCACCAAAAATTGCGTGTGCAAAGTACAGCCAAAGGGAGAAGAGTTGCAGGAAATTGGGGGAGAAATGATTGAGTGATGACTAGACTAAAACATTTCGGAAATTTGGAATACAATGGGACGGGAGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAACCATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCACAAAAAAATTTCTGATGATCGATA</canonical>
            <polymorphic>GAGAGCCGAGAGACCCAAATGAAAAAAAGTGCTTCTAGGGTAGTGGCGGGGGCGCCTTCTCATTTCCATTTAGCTTCCTTTCTCTTTTCTTCCATTTAGAAGAACGGCTCCTGAAGAGGCTTTCCCATCTGCTCTTATTCCGCTCTCTCAGCACTTTTTGACCCAGCGCCTGCCACCATCTTATTCTCATTTTCACTTTCTTTCTGGCTTCTCCCTGTGTGCCCAAACCAAAAAAAGTGCGAACGAAGAGAGGATCTCTTCCGTTTGCGCCCACCCGTCTTACTCTTCCCCAGATTGATGCCATTTCGAAGACTCTTCTCCCGTTTTCGGTAGTGCCCCTCGCTTTCTCTGACTCTCTTTCTCTTTTTTTTTGTCTGAAGTAGAAGCTCGCCACGGACAACCGGGAGAGGACTGCAAAATGTCATTTTTTATGAACATTTTCTGACGTACAGCAGGGTGCATCACGTTGGTTTCTAAACGAAGAGAAAACAAAAACCGGKGGGATAGAGAAAACGACAAAGAATTGCAAATTAGAAATTAACACAAACTGGTGTTAGATACCATCCAAAATATCACCAAAAATTGCGTGTGCAAAGTACAGCCAAAGGGAGAAGAGTTGCAGGAAATTGGGGGAGAAATGATTGAGTGATGACTAGACTAAAACATTTCGGAAATTTGGAATACAATGGGACGGGAGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAACCATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCACAAAAAAATTTCTGATGATCGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACCGGT</site>
                <isoschizomers>
                    <enzyme>AgeI</enzyme>
                    <enzyme>AsiAI</enzyme>
                    <enzyme>BshTI</enzyme>
                    <enzyme>CspAI</enzyme>
                    <enzyme>PinAI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>123 108 66 66 63 63 62 58 57 42 37 34 31 24 24 22 22 20 18 14 14 10 9 5 4 2 2</canonical_bands>
                <polymorphic_bands>123 108 79 66 66 63 63 62 58 57 34 31 24 24 22 22 20 18 14 14 10 9 5 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTTCTCTGACTCTCTTTCTCT</pcr_primer_p1>
		<pcr_primer_p2>GCAATTTTTGGTGATATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GCTTTCTCTGACTCTCTTTCTCTTTTTTTTTGTCTGAAGTAGAAGCTCGCCACGGACAACCGGGAGAGGACTGCAAAATGTCATTTTTTATGAACATTTTCTGACGTACAGCAGGGTGCATCACGTTGGTTTCTAAACGAAGAGAAAACAAAAACCGGTGGGATAGAGAAAACGACAAAGAATTGCAAATTAGAAATTAACACAAACTGGTGTTAGATACCATCCAAAATATCACCAAAAATTGC</canonical_amplicon>
		<polymorphic_amplicon>GCTTTCTCTGACTCTCTTTCTCTTTTTTTTTGTCTGAAGTAGAAGCTCGCCACGGACAACCGGGAGAGGACTGCAAAATGTCATTTTTTATGAACATTTTCTGACGTACAGCAGGGTGCATCACGTTGGTTTCTAAACGAAGAGAAAACAAAAACCGGKGGGATAGAGAAAACGACAAAGAATTGCAAATTAGAAATTAACACAAACTGGTGTTAGATACCATCCAAAATATCACCAAAAATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21468</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>666310</contig_pos>
        <strand></strand>
        <context>ATYAAAAAAA[A/T]CATTGTAAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTATAAAAAAAA</left_flank>
        <right_flank>CATTGTAAGGAAAACCTACTGAAAACCCAAGTCAGGAATTCAATAGCACT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCACAAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTATAAAAAAAAACATTGTAAGGAAAACCTACTGAAAACCCAAGTCAGGAATTCAATAGCACTGAAAAAAGAGTATGGACTTGAAGGGGGGATGAATGACTTAGAAACATATATCACAACTTGTTGTCTCGAGAAGAATCTTAAGATGAAAAAATTGAGCTCTAATCATATGGGAGCATAAGGGAAAAAACAACAATATGCCTAGAAGATGGAAAAATCCTATGGCGAGAGGCAAGAGACGAAACTCCAAATATCGAATACAAATTTTTGACGTGGATATATGTTTTTTTTTCTTGAGAGTTAATTATTTTTCTAGATTTTCGGGGTCTTGTGAGTGAGGCGAAGGAGGGAACGTGTATACATAGAAAAAGAAAAAAAAAAGAAAAAGAAAATAATGAAGACCATCTATCAAAATTAATGGTGTGATGGCTGATGTTTCGAGTATGAGTTTTGGCTGACTGGAAGGGTGGACACCGATGCACTGCTACTCGAGTTAGACTCCTGCTCGAAGTT</canonical>
            <polymorphic>AATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCACAAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTATAAAAAAAAWCATTGTAAGGAAAACCTACTGAAAACCCAAGTCAGGAATTCAATAGCACTGAAAAAAGAGTATGGACTTGAAGGGGGGATGAATGACTTAGAAACATATATCACAACTTGTTGTCTCGAGAAGAATCTTAAGATGAAAAAATTGAGCTCTAATCATATGGGAGCATAAGGGAAAAAACAACAATATGCCTAGAAGATGGAAAAATCCTATGGCGAGAGGCAAGAGACGAAACTCCAAATATCGAATACAAATTTTTGACGTGGATATATGTTTTTTTTTCTTGAGAGTTAATTATTTTTCTAGATTTTCGGGGTCTTGTGAGTGAGGCGAAGGAGGGAACGTGTATACATAGAAAAAGAAAAAAAAAAGAAAAAGAAAATAATGAAGACCATCTATCAAAATTAATGGTGTGATGGCTGATGTTTCGAGTATGAGTTTTGGCTGACTGGAAGGGTGGACACCGATGCACTGCTACTCGAGTTAGACTCCTGCTCGAAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACGAGAAAAGGTGAACAGTAAT</pcr_primer_p1>
		<pcr_primer_p2>CCTTCAAGTCCATACTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTATAAAAAAAAACATTGTAAGGAAAACCTACTGAAAACCCAAGTCAGGAATTCAATAGCACTGAAAAAAGAGTATGGACTTGAAGG</canonical_amplicon>
		<polymorphic_amplicon>AACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTATAAAAAAAAWCATTGTAAGGAAAACCTACTGAAAACCCAAGTCAGGAATTCAATAGCACTGAAAAAAGAGTATGGACTTGAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21469</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>666296</contig_pos>
        <strand>+</strand>
        <context>CAACGGAACA[A/G]TTTATYAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACA</left_flank>
        <right_flank>TTTATAAAAAAAAACATTGTAAGGAAAACCTACTGAAAACCCAAGTCAGG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCACAAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTATAAAAAAAAACATTGTAAGGAAAACCTACTGAAAACCCAAGTCAGGAATTCAATAGCACTGAAAAAAGAGTATGGACTTGAAGGGGGGATGAATGACTTAGAAACATATATCACAACTTGTTGTCTCGAGAAGAATCTTAAGATGAAAAAATTGAGCTCTAATCATATGGGAGCATAAGGGAAAAAACAACAATATGCCTAGAAGATGGAAAAATCCTATGGCGAGAGGCAAGAGACGAAACTCCAAATATCGAATACAAATTTTTGACGTGGATATATGTTTTTTTTTCTTGAGAGTTAATTATTTTTCTAGATTTTCGGGGTCTTGTGAGTGAGGCGAAGGAGGGAACGTGTATACATAGAAAAAGAAAAAAAAAAGAAAAAGAAAATAATGAAGACCATCTATCAAAATTAATGGTGTGATGGCTGATGTTTCGAGTATGAGTTTTGGCTGACTGGAAGGGTGGACACCGATGCACTGCTACTCGAGTTAGAC</canonical>
            <polymorphic>AACCATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCACAAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACARTTTATAAAAAAAAACATTGTAAGGAAAACCTACTGAAAACCCAAGTCAGGAATTCAATAGCACTGAAAAAAGAGTATGGACTTGAAGGGGGGATGAATGACTTAGAAACATATATCACAACTTGTTGTCTCGAGAAGAATCTTAAGATGAAAAAATTGAGCTCTAATCATATGGGAGCATAAGGGAAAAAACAACAATATGCCTAGAAGATGGAAAAATCCTATGGCGAGAGGCAAGAGACGAAACTCCAAATATCGAATACAAATTTTTGACGTGGATATATGTTTTTTTTTCTTGAGAGTTAATTATTTTTCTAGATTTTCGGGGTCTTGTGAGTGAGGCGAAGGAGGGAACGTGTATACATAGAAAAAGAAAAAAAAAAGAAAAAGAAAATAATGAAGACCATCTATCAAAATTAATGGTGTGATGGCTGATGTTTCGAGTATGAGTTTTGGCTGACTGGAAGGGTGGACACCGATGCACTGCTACTCGAGTTAGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 195 157 147</canonical_bands>
                <polymorphic_bands>648 195 157</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCACCTTTTTACAATGGAAC</pcr_primer_p1>
		<pcr_primer_p2>CAGTGCTATTGAATTCCTGACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTATAAAAAAAAACATTGTAAGGAAAACCTACTGAAAACCCAAGTCAGGAATTCAATAGCACTG</canonical_amplicon>
		<polymorphic_amplicon>ATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACARTTTATAAAAAAAAACATTGTAAGGAAAACCTACTGAAAACCCAAGTCAGGAATTCAATAGCACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21470</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>666282</contig_pos>
        <strand>+</strand>
        <context>ACAGAAATTC[A/G]AACCAACGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTC</left_flank>
        <right_flank>AACCAACGGAACAGTTTATAAAAAAAAACATTGTAAGGAAAACCTACTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGGAAAAAAGCAACCATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCACAAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTATAAAAAAAAACATTGTAAGGAAAACCTACTGAAAACCCAAGTCAGGAATTCAATAGCACTGAAAAAAGAGTATGGACTTGAAGGGGGGATGAATGACTTAGAAACATATATCACAACTTGTTGTCTCGAGAAGAATCTTAAGATGAAAAAATTGAGCTCTAATCATATGGGAGCATAAGGGAAAAAACAACAATATGCCTAGAAGATGGAAAAATCCTATGGCGAGAGGCAAGAGACGAAACTCCAAATATCGAATACAAATTTTTGACGTGGATATATGTTTTTTTTTCTTGAGAGTTAATTATTTTTCTAGATTTTCGGGGTCTTGTGAGTGAGGCGAAGGAGGGAACGTGTATACATAGAAAAAGAAAAAAAAAAGAAAAAGAAAATAATGAAGACCATCTATCAAAATTAATGGTGTGATGGCTGATGTTTCGAGTATGAGTTTTGGCTGACTGGAAGGGTGGACACCGATGCACTGC</canonical>
            <polymorphic>TTCTGGAAAAAAGCAACCATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCACAAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCRAACCAACGGAACAGTTTATAAAAAAAAACATTGTAAGGAAAACCTACTGAAAACCCAAGTCAGGAATTCAATAGCACTGAAAAAAGAGTATGGACTTGAAGGGGGGATGAATGACTTAGAAACATATATCACAACTTGTTGTCTCGAGAAGAATCTTAAGATGAAAAAATTGAGCTCTAATCATATGGGAGCATAAGGGAAAAAACAACAATATGCCTAGAAGATGGAAAAATCCTATGGCGAGAGGCAAGAGACGAAACTCCAAATATCGAATACAAATTTTTGACGTGGATATATGTTTTTTTTTCTTGAGAGTTAATTATTTTTCTAGATTTTCGGGGTCTTGTGAGTGAGGCGAAGGAGGGAACGTGTATACATAGAAAAAGAAAAAAAAAAGAAAAAGAAAATAATGAAGACCATCTATCAAAATTAATGGTGTGATGGCTGATGTTTCGAGTATGAGTTTTGGCTGACTGGAAGGGTGGACACCGATGCACTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>268 231 184 146 125 46</canonical_bands>
                <polymorphic_bands>377 268 184 125 46</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCACCTTTTTACAATGGAAC</pcr_primer_p1>
		<pcr_primer_p2>CAGTGCTATTGAATTCCTGACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTATAAAAAAAAACATTGTAAGGAAAACCTACTGAAAACCCAAGTCAGGAATTCAATAGCACTG</canonical_amplicon>
		<polymorphic_amplicon>ATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCRAACCAACGGAACAGTTTATAAAAAAAAACATTGTAAGGAAAACCTACTGAAAACCCAAGTCAGGAATTCAATAGCACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21471</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>666244</contig_pos>
        <strand>+</strand>
        <context>AAGGTCGGAR[C/T]CCTGTGGTAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAA</left_flank>
        <right_flank>CCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAAC</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGGGAGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAACCATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCACAAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTATAAAAAAAAACATTGTAAGGAAAACCTACTGAAAACCCAAGTCAGGAATTCAATAGCACTGAAAAAAGAGTATGGACTTGAAGGGGGGATGAATGACTTAGAAACATATATCACAACTTGTTGTCTCGAGAAGAATCTTAAGATGAAAAAATTGAGCTCTAATCATATGGGAGCATAAGGGAAAAAACAACAATATGCCTAGAAGATGGAAAAATCCTATGGCGAGAGGCAAGAGACGAAACTCCAAATATCGAATACAAATTTTTGACGTGGATATATGTTTTTTTTTCTTGAGAGTTAATTATTTTTCTAGATTTTCGGGGTCTTGTGAGTGAGGCGAAGGAGGGAACGTGTATACATAGAAAAAGAAAAAAAAAAGAAAAAGAAAATAATGAAGACCATCTATCAAAATTAATGGTGTGATGGCTGATGTTTCGAGTATGA</canonical>
            <polymorphic>ACGGGAGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAACCATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCACAAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAAYCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTATAAAAAAAAACATTGTAAGGAAAACCTACTGAAAACCCAAGTCAGGAATTCAATAGCACTGAAAAAAGAGTATGGACTTGAAGGGGGGATGAATGACTTAGAAACATATATCACAACTTGTTGTCTCGAGAAGAATCTTAAGATGAAAAAATTGAGCTCTAATCATATGGGAGCATAAGGGAAAAAACAACAATATGCCTAGAAGATGGAAAAATCCTATGGCGAGAGGCAAGAGACGAAACTCCAAATATCGAATACAAATTTTTGACGTGGATATATGTTTTTTTTTCTTGAGAGTTAATTATTTTTCTAGATTTTCGGGGTCTTGTGAGTGAGGCGAAGGAGGGAACGTGTATACATAGAAAAAGAAAAAAAAAAGAAAAAGAAAATAATGAAGACCATCTATCAAAATTAATGGTGTGATGGCTGATGTTTCGAGTATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGTGTAATAGGTTCTGTGTTCA</pcr_primer_p1>
		<pcr_primer_p2>TTCAGTAGGTTTTCCTTACAATG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTATAAAAAAAAACATTGTAAGGAAAACCTACTGAA</canonical_amplicon>
		<polymorphic_amplicon>GAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAAYCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTATAAAAAAAAACATTGTAAGGAAAACCTACTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21472</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>666243</contig_pos>
        <strand>+</strand>
        <context>CAAGGTCGGA[A/G]YCCTGTGGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGA</left_flank>
        <right_flank>CCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGGGAGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAACCATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCACAAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTATAAAAAAAAACATTGTAAGGAAAACCTACTGAAAACCCAAGTCAGGAATTCAATAGCACTGAAAAAAGAGTATGGACTTGAAGGGGGGATGAATGACTTAGAAACATATATCACAACTTGTTGTCTCGAGAAGAATCTTAAGATGAAAAAATTGAGCTCTAATCATATGGGAGCATAAGGGAAAAAACAACAATATGCCTAGAAGATGGAAAAATCCTATGGCGAGAGGCAAGAGACGAAACTCCAAATATCGAATACAAATTTTTGACGTGGATATATGTTTTTTTTTCTTGAGAGTTAATTATTTTTCTAGATTTTCGGGGTCTTGTGAGTGAGGCGAAGGAGGGAACGTGTATACATAGAAAAAGAAAAAAAAAAGAAAAAGAAAATAATGAAGACCATCTATCAAAATTAATGGTGTGATGGCTGATGTTTCGAGTATG</canonical>
            <polymorphic>GACGGGAGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAACCATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCACAAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGARCCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTATAAAAAAAAACATTGTAAGGAAAACCTACTGAAAACCCAAGTCAGGAATTCAATAGCACTGAAAAAAGAGTATGGACTTGAAGGGGGGATGAATGACTTAGAAACATATATCACAACTTGTTGTCTCGAGAAGAATCTTAAGATGAAAAAATTGAGCTCTAATCATATGGGAGCATAAGGGAAAAAACAACAATATGCCTAGAAGATGGAAAAATCCTATGGCGAGAGGCAAGAGACGAAACTCCAAATATCGAATACAAATTTTTGACGTGGATATATGTTTTTTTTTCTTGAGAGTTAATTATTTTTCTAGATTTTCGGGGTCTTGTGAGTGAGGCGAAGGAGGGAACGTGTATACATAGAAAAAGAAAAAAAAAAGAAAAAGAAAATAATGAAGACCATCTATCAAAATTAATGGTGTGATGGCTGATGTTTCGAGTATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTGTAATAGGTTCTGTGTTCA</pcr_primer_p1>
		<pcr_primer_p2>TTCAGTAGGTTTTCCTTACAATG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTATAAAAAAAAACATTGTAAGGAAAACCTACTGAA</canonical_amplicon>
		<polymorphic_amplicon>GAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGARCCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTATAAAAAAAAACATTGTAAGGAAAACCTACTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21473</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>666162</contig_pos>
        <strand>+</strand>
        <context>ATGGGGAAGA[A/C]ATTGCTTTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGA</left_flank>
        <right_flank>ATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAAGAGTTGCAGGAAATTGGGGGAGAAATGATTGAGTGATGACTAGACTAAAACATTTCGGAAATTTGGAATACAATGGGACGGGAGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAACCATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCACAAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTATAAAAAAAAACATTGTAAGGAAAACCTACTGAAAACCCAAGTCAGGAATTCAATAGCACTGAAAAAAGAGTATGGACTTGAAGGGGGGATGAATGACTTAGAAACATATATCACAACTTGTTGTCTCGAGAAGAATCTTAAGATGAAAAAATTGAGCTCTAATCATATGGGAGCATAAGGGAAAAAACAACAATATGCCTAGAAGATGGAAAAATCCTATGGCGAGAGGCAAGAGACGAAACTCCAAATATCGAATACAAATTTTTGACGTGGATATATGTTTTTTTTTCTTGAGAGTTAATTATTTTTCTAGATTTTCGGGGTCTTGTGAGTGAGGCGAAGGAGGGAACGTGTATACATAG</canonical>
            <polymorphic>GAGAAGAGTTGCAGGAAATTGGGGGAGAAATGATTGAGTGATGACTAGACTAAAACATTTCGGAAATTTGGAATACAATGGGACGGGAGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAACCATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCACAAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGAMATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTATAAAAAAAAACATTGTAAGGAAAACCTACTGAAAACCCAAGTCAGGAATTCAATAGCACTGAAAAAAGAGTATGGACTTGAAGGGGGGATGAATGACTTAGAAACATATATCACAACTTGTTGTCTCGAGAAGAATCTTAAGATGAAAAAATTGAGCTCTAATCATATGGGAGCATAAGGGAAAAAACAACAATATGCCTAGAAGATGGAAAAATCCTATGGCGAGAGGCAAGAGACGAAACTCCAAATATCGAATACAAATTTTTGACGTGGATATATGTTTTTTTTTCTTGAGAGTTAATTATTTTTCTAGATTTTCGGGGTCTTGTGAGTGAGGCGAAGGAGGGAACGTGTATACATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTGTAATAGGTTCTGTGTTCA</pcr_primer_p1>
		<pcr_primer_p2>TTCAGTAGGTTTTCCTTACAATG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTATAAAAAAAAACATTGTAAGGAAAACCTACTGAA</canonical_amplicon>
		<polymorphic_amplicon>GAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGAMATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTATAAAAAAAAACATTGTAAGGAAAACCTACTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21474</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>666105</contig_pos>
        <strand>+</strand>
        <context>TCTGTGTTCA[A/G]ATCATCATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCA</left_flank>
        <right_flank>ATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTAGATACCATCCAAAATATCACCAAAAATTGCGTGTGCAAAGTACAGCCAAAGGGAGAAGAGTTGCAGGAAATTGGGGGAGAAATGATTGAGTGATGACTAGACTAAAACATTTCGGAAATTTGGAATACAATGGGACGGGAGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAACCATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCACAAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTATAAAAAAAAACATTGTAAGGAAAACCTACTGAAAACCCAAGTCAGGAATTCAATAGCACTGAAAAAAGAGTATGGACTTGAAGGGGGGATGAATGACTTAGAAACATATATCACAACTTGTTGTCTCGAGAAGAATCTTAAGATGAAAAAATTGAGCTCTAATCATATGGGAGCATAAGGGAAAAAACAACAATATGCCTAGAAGATGGAAAAATCCTATGGCGAGAGGCAAGAGACGAAACTCCAAATATCGAATACAAATTTTTGACGTGGATATATGTTTTTTTTTCTTGAGAGTTAATTAT</canonical>
            <polymorphic>TGTTAGATACCATCCAAAATATCACCAAAAATTGCGTGTGCAAAGTACAGCCAAAGGGAGAAGAGTTGCAGGAAATTGGGGGAGAAATGATTGAGTGATGACTAGACTAAAACATTTCGGAAATTTGGAATACAATGGGACGGGAGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAACCATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCACAAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCARATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTATAAAAAAAAACATTGTAAGGAAAACCTACTGAAAACCCAAGTCAGGAATTCAATAGCACTGAAAAAAGAGTATGGACTTGAAGGGGGGATGAATGACTTAGAAACATATATCACAACTTGTTGTCTCGAGAAGAATCTTAAGATGAAAAAATTGAGCTCTAATCATATGGGAGCATAAGGGAAAAAACAACAATATGCCTAGAAGATGGAAAAATCCTATGGCGAGAGGCAAGAGACGAAACTCCAAATATCGAATACAAATTTTTGACGTGGATATATGTTTTTTTTTCTTGAGAGTTAATTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACGAGGAGACAGAGATTAT</pcr_primer_p1>
		<pcr_primer_p2>GTGTCGTTTTCAAACTGATGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCACAAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACAC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCACAAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCARATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21476</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>692407</contig_pos>
        <strand>+</strand>
        <context>GGTTTTTTGG[A/G]CAGTCGCCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACGATCCTTGCTTGAATCCGACATCTCTGAAGCATATATGGTTTTTTGG</left_flank>
        <right_flank>CAGTCGCCAATCTGGTTGACTGTGCAGGATTGTCCACTGCTGAGGAGTTG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCTCCGTACTCAAACACCGAAGAACCTGCTGGACATCTGATCACATTGCTGTTCGTGCAGCAGACAGCTTGACCTGTAGAAGAAAACTCGCATTGGTATCCCGATGGGCAAGTGTTGTGCACAAAGTTGCACTCTTGGAATTTGTTGTCTAGACCACGGAACGGTGTCTCGCCGTTTGCACACATTGCTTCTTTGTTGTTGTTGTGGTTGTTGTTTGTGGCTGATCCTTGATTGACTCCACGGTTATTGTTGTTCGTTGGACGGTTGTTCGGGCTTGGTGGCTGATATTTTTGGCAGCAGATGGCGAGTTTCGCCACACTCGATGTCATACATTTGGAATCTTCTGGACATCCGTCAATATCCACTTGGCAAACTTGAACTTGAGTTTTGTCGAGGAAAATTGGAACGTAACCCTTTTGACTACACTTCGGTGGAGTGGTTCTGCAGCACGATCCTTGCTTGAATCCGACATCTCTGAAGCATATATGGTTTTTTGGGCAGTCGCCAATCTGGTTGACTGTGCAGGATTGTCCACTGCTGAGGAGTTGTGGTGGGCATGGAGAAATATTGGAGAGAAGCTCAGCAAAACTGTCTGGCTCGAAAGGTCTTCTCGTTTTATGAGCTGGTGGTGGTGGTAGCGGGCGGACTGGTCGTTGGGAAGAAGGAAGTGGTCCTGAGCAGCACATGTGGAATCCTGGAGCGGTTGCAGATTCGAGGCATTGGAAGTCTTCTGGACAATCGTCTCGTTCGATGCTACAGGCAACGACTGAATTGGTTCCAGGGATGTTATATGGAATACGGTTGTTTGGACAAGCAGTTACCGCTTTACAGCAGATTGGCTGATTTGTGGAAGACTTAACACAAGATGCTCCACTAGGACAAGTGGCTCTAACATTCAATGTGCAAGTTTTAGGAGTGATCTCTCCTTCTTCTGTGAACGGATTCATTCCGCGTGGGCAGAGACCGAAAGCACTGGATTGGACGCAAGACTCGGTGCA</canonical>
            <polymorphic>TTCCTCCGTACTCAAACACCGAAGAACCTGCTGGACATCTGATCACATTGCTGTTCGTGCAGCAGACAGCTTGACCTGTAGAAGAAAACTCGCATTGGTATCCCGATGGGCAAGTGTTGTGCACAAAGTTGCACTCTTGGAATTTGTTGTCTAGACCACGGAACGGTGTCTCGCCGTTTGCACACATTGCTTCTTTGTTGTTGTTGTGGTTGTTGTTTGTGGCTGATCCTTGATTGACTCCACGGTTATTGTTGTTCGTTGGACGGTTGTTCGGGCTTGGTGGCTGATATTTTTGGCAGCAGATGGCGAGTTTCGCCACACTCGATGTCATACATTTGGAATCTTCTGGACATCCGTCAATATCCACTTGGCAAACTTGAACTTGAGTTTTGTCGAGGAAAATTGGAACGTAACCCTTTTGACTACACTTCGGTGGAGTGGTTCTGCAGCACGATCCTTGCTTGAATCCGACATCTCTGAAGCATATATGGTTTTTTGGRCAGTCGCCAATCTGGTTGACTGTGCAGGATTGTCCACTGCTGAGGAGTTGTGGTGGGCATGGAGAAATATTGGAGAGAAGCTCAGCAAAACTGTCTGGCTCGAAAGGTCTTCTCGTTTTATGAGCTGGTGGTGGTGGTAGCGGGCGGACTGGTCGTTGGGAAGAAGGAAGTGGTCCTGAGCAGCACATGTGGAATCCTGGAGCGGTTGCAGATTCGAGGCATTGGAAGTCTTCTGGACAATCGTCTCGTTCGATGCTACAGGCAACGACTGAATTGGTTCCAGGGATGTTATATGGAATACGGTTGTTTGGACAAGCAGTTACCGCTTTACAGCAGATTGGCTGATTTGTGGAAGACTTAACACAAGATGCTCCACTAGGACAAGTGGCTCTAACATTCAATGTGCAAGTTTTAGGAGTGATCTCTCCTTCTTCTGTGAACGGATTCATTCCGCGTGGGCAGAGACCGAAAGCACTGGATTGGACGCAAGACTCGGTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTAACCCTTTTGACTACACTT</pcr_primer_p1>
		<pcr_primer_p2>CTCAGGACCACTTCCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>CGTAACCCTTTTGACTACACTTCGGTGGAGTGGTTCTGCAGCACGATCCTTGCTTGAATCCGACATCTCTGAAGCATATATGGTTTTTTGGGCAGTCGCCAATCTGGTTGACTGTGCAGGATTGTCCACTGCTGAGGAGTTGTGGTGGGCATGGAGAAATATTGGAGAGAAGCTCAGCAAAACTGTCTGGCTCGAAAGGTCTTCTCGTTTTATGAGCTGGTGGTGGTGGTAGCGGGCGGACTGGTCGTTGGGAAGAAGGAAGTGGTCCTGAG</canonical_amplicon>
		<polymorphic_amplicon>CGTAACCCTTTTGACTACACTTCGGTGGAGTGGTTCTGCAGCACGATCCTTGCTTGAATCCGACATCTCTGAAGCATATATGGTTTTTTGGRCAGTCGCCAATCTGGTTGACTGTGCAGGATTGTCCACTGCTGAGGAGTTGTGGTGGGCATGGAGAAATATTGGAGAGAAGCTCAGCAAAACTGTCTGGCTCGAAAGGTCTTCTCGTTTTATGAGCTGGTGGTGGTGGTAGCGGGCGGACTGGTCGTTGGGAAGAAGGAAGTGGTCCTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21477</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>692473</contig_pos>
        <strand>+</strand>
        <context>GGCATGGAGA[A/G]ATATTGGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGACTGTGCAGGATTGTCCACTGCTGAGGAGTTGTGGTGGGCATGGAGA</left_flank>
        <right_flank>ATATTGGAGAGAAGCTCAGCAAAACTGTCTGGCTCGAAAGGTCTTCTCGT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGCTTGACCTGTAGAAGAAAACTCGCATTGGTATCCCGATGGGCAAGTGTTGTGCACAAAGTTGCACTCTTGGAATTTGTTGTCTAGACCACGGAACGGTGTCTCGCCGTTTGCACACATTGCTTCTTTGTTGTTGTTGTGGTTGTTGTTTGTGGCTGATCCTTGATTGACTCCACGGTTATTGTTGTTCGTTGGACGGTTGTTCGGGCTTGGTGGCTGATATTTTTGGCAGCAGATGGCGAGTTTCGCCACACTCGATGTCATACATTTGGAATCTTCTGGACATCCGTCAATATCCACTTGGCAAACTTGAACTTGAGTTTTGTCGAGGAAAATTGGAACGTAACCCTTTTGACTACACTTCGGTGGAGTGGTTCTGCAGCACGATCCTTGCTTGAATCCGACATCTCTGAAGCATATATGGTTTTTTGGGCAGTCGCCAATCTGGTTGACTGTGCAGGATTGTCCACTGCTGAGGAGTTGTGGTGGGCATGGAGAAATATTGGAGAGAAGCTCAGCAAAACTGTCTGGCTCGAAAGGTCTTCTCGTTTTATGAGCTGGTGGTGGTGGTAGCGGGCGGACTGGTCGTTGGGAAGAAGGAAGTGGTCCTGAGCAGCACATGTGGAATCCTGGAGCGGTTGCAGATTCGAGGCATTGGAAGTCTTCTGGACAATCGTCTCGTTCGATGCTACAGGCAACGACTGAATTGGTTCCAGGGATGTTATATGGAATACGGTTGTTTGGACAAGCAGTTACCGCTTTACAGCAGATTGGCTGATTTGTGGAAGACTTAACACAAGATGCTCCACTAGGACAAGTGGCTCTAACATTCAATGTGCAAGTTTTAGGAGTGATCTCTCCTTCTTCTGTGAACGGATTCATTCCGCGTGGGCAGAGACCGAAAGCACTGGATTGGACGCAAGACTCGGTGCAAGCAATTTTGTTGGTGAATCTGTTAGCAGTACCGCCACATCCTAAAATTTTTGATTTTCAGATTAC</canonical>
            <polymorphic>CAGCTTGACCTGTAGAAGAAAACTCGCATTGGTATCCCGATGGGCAAGTGTTGTGCACAAAGTTGCACTCTTGGAATTTGTTGTCTAGACCACGGAACGGTGTCTCGCCGTTTGCACACATTGCTTCTTTGTTGTTGTTGTGGTTGTTGTTTGTGGCTGATCCTTGATTGACTCCACGGTTATTGTTGTTCGTTGGACGGTTGTTCGGGCTTGGTGGCTGATATTTTTGGCAGCAGATGGCGAGTTTCGCCACACTCGATGTCATACATTTGGAATCTTCTGGACATCCGTCAATATCCACTTGGCAAACTTGAACTTGAGTTTTGTCGAGGAAAATTGGAACGTAACCCTTTTGACTACACTTCGGTGGAGTGGTTCTGCAGCACGATCCTTGCTTGAATCCGACATCTCTGAAGCATATATGGTTTTTTGGGCAGTCGCCAATCTGGTTGACTGTGCAGGATTGTCCACTGCTGAGGAGTTGTGGTGGGCATGGAGARATATTGGAGAGAAGCTCAGCAAAACTGTCTGGCTCGAAAGGTCTTCTCGTTTTATGAGCTGGTGGTGGTGGTAGCGGGCGGACTGGTCGTTGGGAAGAAGGAAGTGGTCCTGAGCAGCACATGTGGAATCCTGGAGCGGTTGCAGATTCGAGGCATTGGAAGTCTTCTGGACAATCGTCTCGTTCGATGCTACAGGCAACGACTGAATTGGTTCCAGGGATGTTATATGGAATACGGTTGTTTGGACAAGCAGTTACCGCTTTACAGCAGATTGGCTGATTTGTGGAAGACTTAACACAAGATGCTCCACTAGGACAAGTGGCTCTAACATTCAATGTGCAAGTTTTAGGAGTGATCTCTCCTTCTTCTGTGAACGGATTCATTCCGCGTGGGCAGAGACCGAAAGCACTGGATTGGACGCAAGACTCGGTGCAAGCAATTTTGTTGGTGAATCTGTTAGCAGTACCGCCACATCCTAAAATTTTTGATTTTCAGATTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAATCCGACATCTCTGAAG</pcr_primer_p1>
		<pcr_primer_p2>CTCAGGACCACTTCCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>218</pcr_amplicon_size>
		<canonical_amplicon>TGAATCCGACATCTCTGAAGCATATATGGTTTTTTGGGCAGTCGCCAATCTGGTTGACTGTGCAGGATTGTCCACTGCTGAGGAGTTGTGGTGGGCATGGAGAAATATTGGAGAGAAGCTCAGCAAAACTGTCTGGCTCGAAAGGTCTTCTCGTTTTATGAGCTGGTGGTGGTGGTAGCGGGCGGACTGGTCGTTGGGAAGAAGGAAGTGGTCCTGAG</canonical_amplicon>
		<polymorphic_amplicon>TGAATCCGACATCTCTGAAGCATATATGGTTTTTTGGGCAGTCGCCAATCTGGTTGACTGTGCAGGATTGTCCACTGCTGAGGAGTTGTGGTGGGCATGGAGARATATTGGAGAGAAGCTCAGCAAAACTGTCTGGCTCGAAAGGTCTTCTCGTTTTATGAGCTGGTGGTGGTGGTAGCGGGCGGACTGGTCGTTGGGAAGAAGGAAGTGGTCCTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21478</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>692485</contig_pos>
        <strand>+</strand>
        <context>TATTGGAGAG[A/G]AGCTCAGCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTGTCCACTGCTGAGGAGTTGTGGTGGGCATGGAGAAATATTGGAGAG</left_flank>
        <right_flank>AGCTCAGCAAAACTGTCTGGCTCGAAAGGTCTTCTCGTTTTATGAGCTGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAAGAAAACTCGCATTGGTATCCCGATGGGCAAGTGTTGTGCACAAAGTTGCACTCTTGGAATTTGTTGTCTAGACCACGGAACGGTGTCTCGCCGTTTGCACACATTGCTTCTTTGTTGTTGTTGTGGTTGTTGTTTGTGGCTGATCCTTGATTGACTCCACGGTTATTGTTGTTCGTTGGACGGTTGTTCGGGCTTGGTGGCTGATATTTTTGGCAGCAGATGGCGAGTTTCGCCACACTCGATGTCATACATTTGGAATCTTCTGGACATCCGTCAATATCCACTTGGCAAACTTGAACTTGAGTTTTGTCGAGGAAAATTGGAACGTAACCCTTTTGACTACACTTCGGTGGAGTGGTTCTGCAGCACGATCCTTGCTTGAATCCGACATCTCTGAAGCATATATGGTTTTTTGGGCAGTCGCCAATCTGGTTGACTGTGCAGGATTGTCCACTGCTGAGGAGTTGTGGTGGGCATGGAGAAATATTGGAGAGAAGCTCAGCAAAACTGTCTGGCTCGAAAGGTCTTCTCGTTTTATGAGCTGGTGGTGGTGGTAGCGGGCGGACTGGTCGTTGGGAAGAAGGAAGTGGTCCTGAGCAGCACATGTGGAATCCTGGAGCGGTTGCAGATTCGAGGCATTGGAAGTCTTCTGGACAATCGTCTCGTTCGATGCTACAGGCAACGACTGAATTGGTTCCAGGGATGTTATATGGAATACGGTTGTTTGGACAAGCAGTTACCGCTTTACAGCAGATTGGCTGATTTGTGGAAGACTTAACACAAGATGCTCCACTAGGACAAGTGGCTCTAACATTCAATGTGCAAGTTTTAGGAGTGATCTCTCCTTCTTCTGTGAACGGATTCATTCCGCGTGGGCAGAGACCGAAAGCACTGGATTGGACGCAAGACTCGGTGCAAGCAATTTTGTTGGTGAATCTGTTAGCAGTACCGCCACATCCTAAAATTTTTGATTTTCAGATTACAGTTCTCTTTCT</canonical>
            <polymorphic>TAGAAGAAAACTCGCATTGGTATCCCGATGGGCAAGTGTTGTGCACAAAGTTGCACTCTTGGAATTTGTTGTCTAGACCACGGAACGGTGTCTCGCCGTTTGCACACATTGCTTCTTTGTTGTTGTTGTGGTTGTTGTTTGTGGCTGATCCTTGATTGACTCCACGGTTATTGTTGTTCGTTGGACGGTTGTTCGGGCTTGGTGGCTGATATTTTTGGCAGCAGATGGCGAGTTTCGCCACACTCGATGTCATACATTTGGAATCTTCTGGACATCCGTCAATATCCACTTGGCAAACTTGAACTTGAGTTTTGTCGAGGAAAATTGGAACGTAACCCTTTTGACTACACTTCGGTGGAGTGGTTCTGCAGCACGATCCTTGCTTGAATCCGACATCTCTGAAGCATATATGGTTTTTTGGGCAGTCGCCAATCTGGTTGACTGTGCAGGATTGTCCACTGCTGAGGAGTTGTGGTGGGCATGGAGAAATATTGGAGAGRAGCTCAGCAAAACTGTCTGGCTCGAAAGGTCTTCTCGTTTTATGAGCTGGTGGTGGTGGTAGCGGGCGGACTGGTCGTTGGGAAGAAGGAAGTGGTCCTGAGCAGCACATGTGGAATCCTGGAGCGGTTGCAGATTCGAGGCATTGGAAGTCTTCTGGACAATCGTCTCGTTCGATGCTACAGGCAACGACTGAATTGGTTCCAGGGATGTTATATGGAATACGGTTGTTTGGACAAGCAGTTACCGCTTTACAGCAGATTGGCTGATTTGTGGAAGACTTAACACAAGATGCTCCACTAGGACAAGTGGCTCTAACATTCAATGTGCAAGTTTTAGGAGTGATCTCTCCTTCTTCTGTGAACGGATTCATTCCGCGTGGGCAGAGACCGAAAGCACTGGATTGGACGCAAGACTCGGTGCAAGCAATTTTGTTGGTGAATCTGTTAGCAGTACCGCCACATCCTAAAATTTTTGATTTTCAGATTACAGTTCTCTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATCCGACATCTCTGAAG</pcr_primer_p1>
		<pcr_primer_p2>CTCAGGACCACTTCCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>218</pcr_amplicon_size>
		<canonical_amplicon>TGAATCCGACATCTCTGAAGCATATATGGTTTTTTGGGCAGTCGCCAATCTGGTTGACTGTGCAGGATTGTCCACTGCTGAGGAGTTGTGGTGGGCATGGAGAAATATTGGAGAGAAGCTCAGCAAAACTGTCTGGCTCGAAAGGTCTTCTCGTTTTATGAGCTGGTGGTGGTGGTAGCGGGCGGACTGGTCGTTGGGAAGAAGGAAGTGGTCCTGAG</canonical_amplicon>
		<polymorphic_amplicon>TGAATCCGACATCTCTGAAGCATATATGGTTTTTTGGGCAGTCGCCAATCTGGTTGACTGTGCAGGATTGTCCACTGCTGAGGAGTTGTGGTGGGCATGGAGAAATATTGGAGAGRAGCTCAGCAAAACTGTCTGGCTCGAAAGGTCTTCTCGTTTTATGAGCTGGTGGTGGTGGTAGCGGGCGGACTGGTCGTTGGGAAGAAGGAAGTGGTCCTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21479</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>692521</contig_pos>
        <strand>+</strand>
        <context>AAGGTCTTCT[C/G]GTTTTATGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAAATATTGGAGAGAAGCTCAGCAAAACTGTCTGGCTCGAAAGGTCTTCT</left_flank>
        <right_flank>GTTTTATGAGCTGGTGGTGGTGGTAGCGGGCGGACTGGTCGTTGGGAAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTGTGCACAAAGTTGCACTCTTGGAATTTGTTGTCTAGACCACGGAACGGTGTCTCGCCGTTTGCACACATTGCTTCTTTGTTGTTGTTGTGGTTGTTGTTTGTGGCTGATCCTTGATTGACTCCACGGTTATTGTTGTTCGTTGGACGGTTGTTCGGGCTTGGTGGCTGATATTTTTGGCAGCAGATGGCGAGTTTCGCCACACTCGATGTCATACATTTGGAATCTTCTGGACATCCGTCAATATCCACTTGGCAAACTTGAACTTGAGTTTTGTCGAGGAAAATTGGAACGTAACCCTTTTGACTACACTTCGGTGGAGTGGTTCTGCAGCACGATCCTTGCTTGAATCCGACATCTCTGAAGCATATATGGTTTTTTGGGCAGTCGCCAATCTGGTTGACTGTGCAGGATTGTCCACTGCTGAGGAGTTGTGGTGGGCATGGAGAAATATTGGAGAGAAGCTCAGCAAAACTGTCTGGCTCGAAAGGTCTTCTCGTTTTATGAGCTGGTGGTGGTGGTAGCGGGCGGACTGGTCGTTGGGAAGAAGGAAGTGGTCCTGAGCAGCACATGTGGAATCCTGGAGCGGTTGCAGATTCGAGGCATTGGAAGTCTTCTGGACAATCGTCTCGTTCGATGCTACAGGCAACGACTGAATTGGTTCCAGGGATGTTATATGGAATACGGTTGTTTGGACAAGCAGTTACCGCTTTACAGCAGATTGGCTGATTTGTGGAAGACTTAACACAAGATGCTCCACTAGGACAAGTGGCTCTAACATTCAATGTGCAAGTTTTAGGAGTGATCTCTCCTTCTTCTGTGAACGGATTCATTCCGCGTGGGCAGAGACCGAAAGCACTGGATTGGACGCAAGACTCGGTGCAAGCAATTTTGTTGGTGAATCTGTTAGCAGTACCGCCACATCCTAAAATTTTTGATTTTCAGATTACAGTTCTCTTTCTGATTTTTCTGACAAACCATTATACACAAATTGGGAG</canonical>
            <polymorphic>TGTTGTGCACAAAGTTGCACTCTTGGAATTTGTTGTCTAGACCACGGAACGGTGTCTCGCCGTTTGCACACATTGCTTCTTTGTTGTTGTTGTGGTTGTTGTTTGTGGCTGATCCTTGATTGACTCCACGGTTATTGTTGTTCGTTGGACGGTTGTTCGGGCTTGGTGGCTGATATTTTTGGCAGCAGATGGCGAGTTTCGCCACACTCGATGTCATACATTTGGAATCTTCTGGACATCCGTCAATATCCACTTGGCAAACTTGAACTTGAGTTTTGTCGAGGAAAATTGGAACGTAACCCTTTTGACTACACTTCGGTGGAGTGGTTCTGCAGCACGATCCTTGCTTGAATCCGACATCTCTGAAGCATATATGGTTTTTTGGGCAGTCGCCAATCTGGTTGACTGTGCAGGATTGTCCACTGCTGAGGAGTTGTGGTGGGCATGGAGAAATATTGGAGAGAAGCTCAGCAAAACTGTCTGGCTCGAAAGGTCTTCTSGTTTTATGAGCTGGTGGTGGTGGTAGCGGGCGGACTGGTCGTTGGGAAGAAGGAAGTGGTCCTGAGCAGCACATGTGGAATCCTGGAGCGGTTGCAGATTCGAGGCATTGGAAGTCTTCTGGACAATCGTCTCGTTCGATGCTACAGGCAACGACTGAATTGGTTCCAGGGATGTTATATGGAATACGGTTGTTTGGACAAGCAGTTACCGCTTTACAGCAGATTGGCTGATTTGTGGAAGACTTAACACAAGATGCTCCACTAGGACAAGTGGCTCTAACATTCAATGTGCAAGTTTTAGGAGTGATCTCTCCTTCTTCTGTGAACGGATTCATTCCGCGTGGGCAGAGACCGAAAGCACTGGATTGGACGCAAGACTCGGTGCAAGCAATTTTGTTGGTGAATCTGTTAGCAGTACCGCCACATCCTAAAATTTTTGATTTTCAGATTACAGTTCTCTTTCTGATTTTTCTGACAAACCATTATACACAAATTGGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATCCGACATCTCTGAAG</pcr_primer_p1>
		<pcr_primer_p2>CTCAGGACCACTTCCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>218</pcr_amplicon_size>
		<canonical_amplicon>TGAATCCGACATCTCTGAAGCATATATGGTTTTTTGGGCAGTCGCCAATCTGGTTGACTGTGCAGGATTGTCCACTGCTGAGGAGTTGTGGTGGGCATGGAGAAATATTGGAGAGAAGCTCAGCAAAACTGTCTGGCTCGAAAGGTCTTCTCGTTTTATGAGCTGGTGGTGGTGGTAGCGGGCGGACTGGTCGTTGGGAAGAAGGAAGTGGTCCTGAG</canonical_amplicon>
		<polymorphic_amplicon>TGAATCCGACATCTCTGAAGCATATATGGTTTTTTGGGCAGTCGCCAATCTGGTTGACTGTGCAGGATTGTCCACTGCTGAGGAGTTGTGGTGGGCATGGAGAAATATTGGAGAGAAGCTCAGCAAAACTGTCTGGCTCGAAAGGTCTTCTSGTTTTATGAGCTGGTGGTGGTGGTAGCGGGCGGACTGGTCGTTGGGAAGAAGGAAGTGGTCCTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21480</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>692605</contig_pos>
        <strand>+</strand>
        <context>TGTGGAATCC[A/T]GGAGCGGTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTGGTCGTTGGGAAGAAGGAAGTGGTCCTGAGCAGCACATGTGGAATCC</left_flank>
        <right_flank>GGAGCGGTTGCAGATTCGAGGCATTGGAAGTCTTCTGGACAATCGTCTCG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTGTTGTGGTTGTTGTTTGTGGCTGATCCTTGATTGACTCCACGGTTATTGTTGTTCGTTGGACGGTTGTTCGGGCTTGGTGGCTGATATTTTTGGCAGCAGATGGCGAGTTTCGCCACACTCGATGTCATACATTTGGAATCTTCTGGACATCCGTCAATATCCACTTGGCAAACTTGAACTTGAGTTTTGTCGAGGAAAATTGGAACGTAACCCTTTTGACTACACTTCGGTGGAGTGGTTCTGCAGCACGATCCTTGCTTGAATCCGACATCTCTGAAGCATATATGGTTTTTTGGGCAGTCGCCAATCTGGTTGACTGTGCAGGATTGTCCACTGCTGAGGAGTTGTGGTGGGCATGGAGAAATATTGGAGAGAAGCTCAGCAAAACTGTCTGGCTCGAAAGGTCTTCTCGTTTTATGAGCTGGTGGTGGTGGTAGCGGGCGGACTGGTCGTTGGGAAGAAGGAAGTGGTCCTGAGCAGCACATGTGGAATCCTGGAGCGGTTGCAGATTCGAGGCATTGGAAGTCTTCTGGACAATCGTCTCGTTCGATGCTACAGGCAACGACTGAATTGGTTCCAGGGATGTTATATGGAATACGGTTGTTTGGACAAGCAGTTACCGCTTTACAGCAGATTGGCTGATTTGTGGAAGACTTAACACAAGATGCTCCACTAGGACAAGTGGCTCTAACATTCAATGTGCAAGTTTTAGGAGTGATCTCTCCTTCTTCTGTGAACGGATTCATTCCGCGTGGGCAGAGACCGAAAGCACTGGATTGGACGCAAGACTCGGTGCAAGCAATTTTGTTGGTGAATCTGTTAGCAGTACCGCCACATCCTAAAATTTTTGATTTTCAGATTACAGTTCTCTTTCTGATTTTTCTGACAAACCATTATACACAAATTGGGAGCACTTCTTCTTCGACTTATCATAAAACCACATGCTTCGTTGAGTGGATCCCTTGCTCCGTTTCCTCTTGACATATTTGCGTTAC</canonical>
            <polymorphic>TGTTGTTGTGGTTGTTGTTTGTGGCTGATCCTTGATTGACTCCACGGTTATTGTTGTTCGTTGGACGGTTGTTCGGGCTTGGTGGCTGATATTTTTGGCAGCAGATGGCGAGTTTCGCCACACTCGATGTCATACATTTGGAATCTTCTGGACATCCGTCAATATCCACTTGGCAAACTTGAACTTGAGTTTTGTCGAGGAAAATTGGAACGTAACCCTTTTGACTACACTTCGGTGGAGTGGTTCTGCAGCACGATCCTTGCTTGAATCCGACATCTCTGAAGCATATATGGTTTTTTGGGCAGTCGCCAATCTGGTTGACTGTGCAGGATTGTCCACTGCTGAGGAGTTGTGGTGGGCATGGAGAAATATTGGAGAGAAGCTCAGCAAAACTGTCTGGCTCGAAAGGTCTTCTCGTTTTATGAGCTGGTGGTGGTGGTAGCGGGCGGACTGGTCGTTGGGAAGAAGGAAGTGGTCCTGAGCAGCACATGTGGAATCCWGGAGCGGTTGCAGATTCGAGGCATTGGAAGTCTTCTGGACAATCGTCTCGTTCGATGCTACAGGCAACGACTGAATTGGTTCCAGGGATGTTATATGGAATACGGTTGTTTGGACAAGCAGTTACCGCTTTACAGCAGATTGGCTGATTTGTGGAAGACTTAACACAAGATGCTCCACTAGGACAAGTGGCTCTAACATTCAATGTGCAAGTTTTAGGAGTGATCTCTCCTTCTTCTGTGAACGGATTCATTCCGCGTGGGCAGAGACCGAAAGCACTGGATTGGACGCAAGACTCGGTGCAAGCAATTTTGTTGGTGAATCTGTTAGCAGTACCGCCACATCCTAAAATTTTTGATTTTCAGATTACAGTTCTCTTTCTGATTTTTCTGACAAACCATTATACACAAATTGGGAGCACTTCTTCTTCGACTTATCATAAAACCACATGCTTCGTTGAGTGGATCCCTTGCTCCGTTTCCTCTTGACATATTTGCGTTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>499 417 84</canonical_bands>
                <polymorphic_bands>583 417</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAATCCGACATCTCTGAAG</pcr_primer_p1>
		<pcr_primer_p2>AATTCAGTCGTTGCCTGTAG</pcr_primer_p2>
		<pcr_amplicon_size>313</pcr_amplicon_size>
		<canonical_amplicon>TGAATCCGACATCTCTGAAGCATATATGGTTTTTTGGGCAGTCGCCAATCTGGTTGACTGTGCAGGATTGTCCACTGCTGAGGAGTTGTGGTGGGCATGGAGAAATATTGGAGAGAAGCTCAGCAAAACTGTCTGGCTCGAAAGGTCTTCTCGTTTTATGAGCTGGTGGTGGTGGTAGCGGGCGGACTGGTCGTTGGGAAGAAGGAAGTGGTCCTGAGCAGCACATGTGGAATCCTGGAGCGGTTGCAGATTCGAGGCATTGGAAGTCTTCTGGACAATCGTCTCGTTCGATGCTACAGGCAACGACTGAATT</canonical_amplicon>
		<polymorphic_amplicon>TGAATCCGACATCTCTGAAGCATATATGGTTTTTTGGGCAGTCGCCAATCTGGTTGACTGTGCAGGATTGTCCACTGCTGAGGAGTTGTGGTGGGCATGGAGAAATATTGGAGAGAAGCTCAGCAAAACTGTCTGGCTCGAAAGGTCTTCTCGTTTTATGAGCTGGTGGTGGTGGTAGCGGGCGGACTGGTCGTTGGGAAGAAGGAAGTGGTCCTGAGCAGCACATGTGGAATCCWGGAGCGGTTGCAGATTCGAGGCATTGGAAGTCTTCTGGACAATCGTCTCGTTCGATGCTACAGGCAACGACTGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21481</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>694680</contig_pos>
        <strand>+</strand>
        <context>TCTTAAGACT[G/T]CTGACCACCC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTGAGGTCACTGTGTTTTCCTTTAGTTTTTAATTCCGGCTTCTTAAGACT</left_flank>
        <right_flank>CTGACCACCCAGAAAGTTTATGAAAACTGTGCAAACACGGGGCATCAGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGGCTCTTCGACAAGACAAGCGTCTTTTTTTTCAAAAAAGATTTCGCGCAAAACAGGGATATCGTATTACTCACCCATAATTTCACCATCCGGATTTGAGCAGCAAATGAATTTGTTCAAGTATTGGCTCTTGCTACAAACGTATCCTGCTTTACAAGAACTTCCATCAGTTGGCGAGCATTCAATTGGGTTACTTCCTCTTAGTTGAGGAGCCGAGTTGATAGCACATCCCATATCTTTAGCGCAGCATCTTGTGGTGGTCCCGGCAACCAATGTGCATCCAAATCCAGTTGGACACGAGTTATCACTGTCGAGAACACAAGAACGTGGTTTTCCAGTAGCCATCTGTAACAGGAAAAAAACAAAGTAGACAAATATTTGGCCTTTTGGGTGTACGGGTGGCTAGTGTGTTTTTTTTTTGGAACAAAGAATCATTCTTCTCTATTCGCTGAGGTCACTGTGTTTTCCTTTAGTTTTTAATTCCGGCTTCTTAAGACTTCTGACCACCCAGAAAGTTTATGAAAACTGTGCAAACACGGGGCATCAGAATGGACAAATTTCTTACCTCGATGTATGTAACGCGTCCTTCGCCGCAATTAATCTTGTCATGGGAACTTTTGGCGATTGGAGTTGGGTTCTGACAACAGTAGGAAGAGCCGGTGCGCTCGTAAAATTGACAACTGTATCCTGAAATGAGCATGGGGATAAGAATACCAAGCCATAGTGATAAACAAACCATCTGGACAGCTGCTGATGGAAGGATTGCAGGTAACCGGTGCAGACAGAATTGTTAATGGGATTCCCTCTCCACACAAGTCATCTAAAATTTCAATAATAAAAAACAATGTCTATATATCAAGGTCTCGCCTGGGGCTTGGAAAAACGGCTGAGAGAAAATATCATCTATCGGATCGTCCGCTTGCATTAACGAGTCGCATTCTCCTGTTTCACTATTGAATATTTTACCACTAGCGCATTTTCGTTTAGAGAAAGATCTGA</canonical>
            <polymorphic>TCGGCTCTTCGACAAGACAAGCGTCTTTTTTTTCAAAAAAGATTTCGCGCAAAACAGGGATATCGTATTACTCACCCATAATTTCACCATCCGGATTTGAGCAGCAAATGAATTTGTTCAAGTATTGGCTCTTGCTACAAACGTATCCTGCTTTACAAGAACTTCCATCAGTTGGCGAGCATTCAATTGGGTTACTTCCTCTTAGTTGAGGAGCCGAGTTGATAGCACATCCCATATCTTTAGCGCAGCATCTTGTGGTGGTCCCGGCAACCAATGTGCATCCAAATCCAGTTGGACACGAGTTATCACTGTCGAGAACACAAGAACGTGGTTTTCCAGTAGCCATCTGTAACAGGAAAAAAACAAAGTAGACAAATATTTGGCCTTTTGGGTGTACGGGTGGCTAGTGTGTTTTTTTTTTGGAACAAAGAATCATTCTTCTCTATTCGCTGAGGTCACTGTGTTTTCCTTTAGTTTTTAATTCCGGCTTCTTAAGACTKCTGACCACCCAGAAAGTTTATGAAAACTGTGCAAACACGGGGCATCAGAATGGACAAATTTCTTACCTCGATGTATGTAACGCGTCCTTCGCCGCAATTAATCTTGTCATGGGAACTTTTGGCGATTGGAGTTGGGTTCTGACAACAGTAGGAAGAGCCGGTGCGCTCGTAAAATTGACAACTGTATCCTGAAATGAGCATGGGGATAAGAATACCAAGCCATAGTGATAAACAAACCATCTGGACAGCTGCTGATGGAAGGATTGCAGGTAACCGGTGCAGACAGAATTGTTAATGGGATTCCCTCTCCACACAAGTCATCTAAAATTTCAATAATAAAAAACAATGTCTATATATCAAGGTCTCGCCTGGGGCTTGGAAAAACGGCTGAGAGAAAATATCATCTATCGGATCGTCCGCTTGCATTAACGAGTCGCATTCTCCTGTTTCACTATTGAATATTTTACCACTAGCGCATTTTCGTTTAGAGAAAGATCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>502 270 93 88 45 2</canonical_bands>
                <polymorphic_bands>547 270 93 88 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTCGCTGAGGTCACTGT</pcr_primer_p1>
		<pcr_primer_p2>AGGATACAGTTGTCAATTTTACG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTATTCGCTGAGGTCACTGTGTTTTCCTTTAGTTTTTAATTCCGGCTTCTTAAGACTTCTGACCACCCAGAAAGTTTATGAAAACTGTGCAAACACGGGGCATCAGAATGGACAAATTTCTTACCTCGATGTATGTAACGCGTCCTTCGCCGCAATTAATCTTGTCATGGGAACTTTTGGCGATTGGAGTTGGGTTCTGACAACAGTAGGAAGAGCCGGTGCGCTCGTAAAATTGACAACTGTATCCT</canonical_amplicon>
		<polymorphic_amplicon>CTATTCGCTGAGGTCACTGTGTTTTCCTTTAGTTTTTAATTCCGGCTTCTTAAGACTKCTGACCACCCAGAAAGTTTATGAAAACTGTGCAAACACGGGGCATCAGAATGGACAAATTTCTTACCTCGATGTATGTAACGCGTCCTTCGCCGCAATTAATCTTGTCATGGGAACTTTTGGCGATTGGAGTTGGGTTCTGACAACAGTAGGAAGAGCCGGTGCGCTCGTAAAATTGACAACTGTATCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21482</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>694740</contig_pos>
        <strand>+</strand>
        <context>ATGGACAAAT[G/T]TCTTACCTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAGAAAGTTTATGAAAACTGTGCAAACACGGGGCATCAGAATGGACAAAT</left_flank>
        <right_flank>TCTTACCTCGATGTATGTAACGCGTCCTTCGCCGCAATTAATCTTGTCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCGTATTACTCACCCATAATTTCACCATCCGGATTTGAGCAGCAAATGAATTTGTTCAAGTATTGGCTCTTGCTACAAACGTATCCTGCTTTACAAGAACTTCCATCAGTTGGCGAGCATTCAATTGGGTTACTTCCTCTTAGTTGAGGAGCCGAGTTGATAGCACATCCCATATCTTTAGCGCAGCATCTTGTGGTGGTCCCGGCAACCAATGTGCATCCAAATCCAGTTGGACACGAGTTATCACTGTCGAGAACACAAGAACGTGGTTTTCCAGTAGCCATCTGTAACAGGAAAAAAACAAAGTAGACAAATATTTGGCCTTTTGGGTGTACGGGTGGCTAGTGTGTTTTTTTTTTGGAACAAAGAATCATTCTTCTCTATTCGCTGAGGTCACTGTGTTTTCCTTTAGTTTTTAATTCCGGCTTCTTAAGACTTCTGACCACCCAGAAAGTTTATGAAAACTGTGCAAACACGGGGCATCAGAATGGACAAATTTCTTACCTCGATGTATGTAACGCGTCCTTCGCCGCAATTAATCTTGTCATGGGAACTTTTGGCGATTGGAGTTGGGTTCTGACAACAGTAGGAAGAGCCGGTGCGCTCGTAAAATTGACAACTGTATCCTGAAATGAGCATGGGGATAAGAATACCAAGCCATAGTGATAAACAAACCATCTGGACAGCTGCTGATGGAAGGATTGCAGGTAACCGGTGCAGACAGAATTGTTAATGGGATTCCCTCTCCACACAAGTCATCTAAAATTTCAATAATAAAAAACAATGTCTATATATCAAGGTCTCGCCTGGGGCTTGGAAAAACGGCTGAGAGAAAATATCATCTATCGGATCGTCCGCTTGCATTAACGAGTCGCATTCTCCTGTTTCACTATTGAATATTTTACCACTAGCGCATTTTCGTTTAGAGAAAGATCTGAAAATCAAAATTTCAGAATTTGAAAATTTTCGAAAACTCTTACCCTTCCAAATTGCAGTAT</canonical>
            <polymorphic>TATCGTATTACTCACCCATAATTTCACCATCCGGATTTGAGCAGCAAATGAATTTGTTCAAGTATTGGCTCTTGCTACAAACGTATCCTGCTTTACAAGAACTTCCATCAGTTGGCGAGCATTCAATTGGGTTACTTCCTCTTAGTTGAGGAGCCGAGTTGATAGCACATCCCATATCTTTAGCGCAGCATCTTGTGGTGGTCCCGGCAACCAATGTGCATCCAAATCCAGTTGGACACGAGTTATCACTGTCGAGAACACAAGAACGTGGTTTTCCAGTAGCCATCTGTAACAGGAAAAAAACAAAGTAGACAAATATTTGGCCTTTTGGGTGTACGGGTGGCTAGTGTGTTTTTTTTTTGGAACAAAGAATCATTCTTCTCTATTCGCTGAGGTCACTGTGTTTTCCTTTAGTTTTTAATTCCGGCTTCTTAAGACTTCTGACCACCCAGAAAGTTTATGAAAACTGTGCAAACACGGGGCATCAGAATGGACAAATKTCTTACCTCGATGTATGTAACGCGTCCTTCGCCGCAATTAATCTTGTCATGGGAACTTTTGGCGATTGGAGTTGGGTTCTGACAACAGTAGGAAGAGCCGGTGCGCTCGTAAAATTGACAACTGTATCCTGAAATGAGCATGGGGATAAGAATACCAAGCCATAGTGATAAACAAACCATCTGGACAGCTGCTGATGGAAGGATTGCAGGTAACCGGTGCAGACAGAATTGTTAATGGGATTCCCTCTCCACACAAGTCATCTAAAATTTCAATAATAAAAAACAATGTCTATATATCAAGGTCTCGCCTGGGGCTTGGAAAAACGGCTGAGAGAAAATATCATCTATCGGATCGTCCGCTTGCATTAACGAGTCGCATTCTCCTGTTTCACTATTGAATATTTTACCACTAGCGCATTTTCGTTTAGAGAAAGATCTGAAAATCAAAATTTCAGAATTTGAAAATTTTCGAAAACTCTTACCCTTCCAAATTGCAGTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>446 269 182 50 37 8 8</canonical_bands>
                <polymorphic_bands>715 182 50 37 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>295 182 114 77 77 74 39 39 31 26 19 11 8 8</canonical_bands>
                <polymorphic_bands>295 182 116 114 77 74 39 31 26 19 11 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGTCACTGTGTTTTCCTTTAGT</pcr_primer_p1>
		<pcr_primer_p2>ATGCTCATTTCAGGATACAGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGGTCACTGTGTTTTCCTTTAGTTTTTAATTCCGGCTTCTTAAGACTTCTGACCACCCAGAAAGTTTATGAAAACTGTGCAAACACGGGGCATCAGAATGGACAAATTTCTTACCTCGATGTATGTAACGCGTCCTTCGCCGCAATTAATCTTGTCATGGGAACTTTTGGCGATTGGAGTTGGGTTCTGACAACAGTAGGAAGAGCCGGTGCGCTCGTAAAATTGACAACTGTATCCTGAAATGAGCAT</canonical_amplicon>
		<polymorphic_amplicon>AGGTCACTGTGTTTTCCTTTAGTTTTTAATTCCGGCTTCTTAAGACTTCTGACCACCCAGAAAGTTTATGAAAACTGTGCAAACACGGGGCATCAGAATGGACAAATKTCTTACCTCGATGTATGTAACGCGTCCTTCGCCGCAATTAATCTTGTCATGGGAACTTTTGGCGATTGGAGTTGGGTTCTGACAACAGTAGGAAGAGCCGGTGCGCTCGTAAAATTGACAACTGTATCCTGAAATGAGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21483</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>694762</contig_pos>
        <strand>+</strand>
        <context>TGTATGTAAC[A/G]CGTCCTTCGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAACACGGGGCATCAGAATGGACAAATTTCTTACCTCGATGTATGTAAC</left_flank>
        <right_flank>CGTCCTTCGCCGCAATTAATCTTGTCATGGGAACTTTTGGCGATTGGAGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCACCATCCGGATTTGAGCAGCAAATGAATTTGTTCAAGTATTGGCTCTTGCTACAAACGTATCCTGCTTTACAAGAACTTCCATCAGTTGGCGAGCATTCAATTGGGTTACTTCCTCTTAGTTGAGGAGCCGAGTTGATAGCACATCCCATATCTTTAGCGCAGCATCTTGTGGTGGTCCCGGCAACCAATGTGCATCCAAATCCAGTTGGACACGAGTTATCACTGTCGAGAACACAAGAACGTGGTTTTCCAGTAGCCATCTGTAACAGGAAAAAAACAAAGTAGACAAATATTTGGCCTTTTGGGTGTACGGGTGGCTAGTGTGTTTTTTTTTTGGAACAAAGAATCATTCTTCTCTATTCGCTGAGGTCACTGTGTTTTCCTTTAGTTTTTAATTCCGGCTTCTTAAGACTTCTGACCACCCAGAAAGTTTATGAAAACTGTGCAAACACGGGGCATCAGAATGGACAAATTTCTTACCTCGATGTATGTAACGCGTCCTTCGCCGCAATTAATCTTGTCATGGGAACTTTTGGCGATTGGAGTTGGGTTCTGACAACAGTAGGAAGAGCCGGTGCGCTCGTAAAATTGACAACTGTATCCTGAAATGAGCATGGGGATAAGAATACCAAGCCATAGTGATAAACAAACCATCTGGACAGCTGCTGATGGAAGGATTGCAGGTAACCGGTGCAGACAGAATTGTTAATGGGATTCCCTCTCCACACAAGTCATCTAAAATTTCAATAATAAAAAACAATGTCTATATATCAAGGTCTCGCCTGGGGCTTGGAAAAACGGCTGAGAGAAAATATCATCTATCGGATCGTCCGCTTGCATTAACGAGTCGCATTCTCCTGTTTCACTATTGAATATTTTACCACTAGCGCATTTTCGTTTAGAGAAAGATCTGAAAATCAAAATTTCAGAATTTGAAAATTTTCGAAAACTCTTACCCTTCCAAATTGCAGTATAAATAGGATTCAGGATTTCCTG</canonical>
            <polymorphic>TTCACCATCCGGATTTGAGCAGCAAATGAATTTGTTCAAGTATTGGCTCTTGCTACAAACGTATCCTGCTTTACAAGAACTTCCATCAGTTGGCGAGCATTCAATTGGGTTACTTCCTCTTAGTTGAGGAGCCGAGTTGATAGCACATCCCATATCTTTAGCGCAGCATCTTGTGGTGGTCCCGGCAACCAATGTGCATCCAAATCCAGTTGGACACGAGTTATCACTGTCGAGAACACAAGAACGTGGTTTTCCAGTAGCCATCTGTAACAGGAAAAAAACAAAGTAGACAAATATTTGGCCTTTTGGGTGTACGGGTGGCTAGTGTGTTTTTTTTTTGGAACAAAGAATCATTCTTCTCTATTCGCTGAGGTCACTGTGTTTTCCTTTAGTTTTTAATTCCGGCTTCTTAAGACTTCTGACCACCCAGAAAGTTTATGAAAACTGTGCAAACACGGGGCATCAGAATGGACAAATTTCTTACCTCGATGTATGTAACRCGTCCTTCGCCGCAATTAATCTTGTCATGGGAACTTTTGGCGATTGGAGTTGGGTTCTGACAACAGTAGGAAGAGCCGGTGCGCTCGTAAAATTGACAACTGTATCCTGAAATGAGCATGGGGATAAGAATACCAAGCCATAGTGATAAACAAACCATCTGGACAGCTGCTGATGGAAGGATTGCAGGTAACCGGTGCAGACAGAATTGTTAATGGGATTCCCTCTCCACACAAGTCATCTAAAATTTCAATAATAAAAAACAATGTCTATATATCAAGGTCTCGCCTGGGGCTTGGAAAAACGGCTGAGAGAAAATATCATCTATCGGATCGTCCGCTTGCATTAACGAGTCGCATTCTCCTGTTTCACTATTGAATATTTTACCACTAGCGCATTTTCGTTTAGAGAAAGATCTGAAAATCAAAATTTCAGAATTTGAAAATTTTCGAAAACTCTTACCCTTCCAAATTGCAGTATAAATAGGATTCAGGATTTCCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGCGT</site>
                <isoschizomers>
                    <enzyme>MluI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGTCACTGTGTTTTCCTTTAGT</pcr_primer_p1>
		<pcr_primer_p2>ATGCTCATTTCAGGATACAGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGGTCACTGTGTTTTCCTTTAGTTTTTAATTCCGGCTTCTTAAGACTTCTGACCACCCAGAAAGTTTATGAAAACTGTGCAAACACGGGGCATCAGAATGGACAAATTTCTTACCTCGATGTATGTAACGCGTCCTTCGCCGCAATTAATCTTGTCATGGGAACTTTTGGCGATTGGAGTTGGGTTCTGACAACAGTAGGAAGAGCCGGTGCGCTCGTAAAATTGACAACTGTATCCTGAAATGAGCAT</canonical_amplicon>
		<polymorphic_amplicon>AGGTCACTGTGTTTTCCTTTAGTTTTTAATTCCGGCTTCTTAAGACTTCTGACCACCCAGAAAGTTTATGAAAACTGTGCAAACACGGGGCATCAGAATGGACAAATTTCTTACCTCGATGTATGTAACRCGTCCTTCGCCGCAATTAATCTTGTCATGGGAACTTTTGGCGATTGGAGTTGGGTTCTGACAACAGTAGGAAGAGCCGGTGCGCTCGTAAAATTGACAACTGTATCCTGAAATGAGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21484</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>695004</contig_pos>
        <strand>+</strand>
        <context>CAAGTCATCT[A/G]AAATTTCAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGGTGCAGACAGAATTGTTAATGGGATTCCCTCTCCACACAAGTCATCT</left_flank>
        <right_flank>AAATTTCAATAATAAAAAACAATGTCTATATATCAAGGTCTCGCCTGGGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGTGGTTTTCCAGTAGCCATCTGTAACAGGAAAAAAACAAAGTAGACAAATATTTGGCCTTTTGGGTGTACGGGTGGCTAGTGTGTTTTTTTTTTGGAACAAAGAATCATTCTTCTCTATTCGCTGAGGTCACTGTGTTTTCCTTTAGTTTTTAATTCCGGCTTCTTAAGACTTCTGACCACCCAGAAAGTTTATGAAAACTGTGCAAACACGGGGCATCAGAATGGACAAATTTCTTACCTCGATGTATGTAACGCGTCCTTCGCCGCAATTAATCTTGTCATGGGAACTTTTGGCGATTGGAGTTGGGTTCTGACAACAGTAGGAAGAGCCGGTGCGCTCGTAAAATTGACAACTGTATCCTGAAATGAGCATGGGGATAAGAATACCAAGCCATAGTGATAAACAAACCATCTGGACAGCTGCTGATGGAAGGATTGCAGGTAACCGGTGCAGACAGAATTGTTAATGGGATTCCCTCTCCACACAAGTCATCTAAAATTTCAATAATAAAAAACAATGTCTATATATCAAGGTCTCGCCTGGGGCTTGGAAAAACGGCTGAGAGAAAATATCATCTATCGGATCGTCCGCTTGCATTAACGAGTCGCATTCTCCTGTTTCACTATTGAATATTTTACCACTAGCGCATTTTCGTTTAGAGAAAGATCTGAAAATCAAAATTTCAGAATTTGAAAATTTTCGAAAACTCTTACCCTTCCAAATTGCAGTATAAATAGGATTCAGGATTTCCTGGATCTGGCTTTTTGATGTTGGAAGTTGGATCACATTCTAATCCTGCTCGGACTAGAAGGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATAACTCACACTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAACATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTAAAAAAGAAAAAAAACAATTGG</canonical>
            <polymorphic>AACGTGGTTTTCCAGTAGCCATCTGTAACAGGAAAAAAACAAAGTAGACAAATATTTGGCCTTTTGGGTGTACGGGTGGCTAGTGTGTTTTTTTTTTGGAACAAAGAATCATTCTTCTCTATTCGCTGAGGTCACTGTGTTTTCCTTTAGTTTTTAATTCCGGCTTCTTAAGACTTCTGACCACCCAGAAAGTTTATGAAAACTGTGCAAACACGGGGCATCAGAATGGACAAATTTCTTACCTCGATGTATGTAACGCGTCCTTCGCCGCAATTAATCTTGTCATGGGAACTTTTGGCGATTGGAGTTGGGTTCTGACAACAGTAGGAAGAGCCGGTGCGCTCGTAAAATTGACAACTGTATCCTGAAATGAGCATGGGGATAAGAATACCAAGCCATAGTGATAAACAAACCATCTGGACAGCTGCTGATGGAAGGATTGCAGGTAACCGGTGCAGACAGAATTGTTAATGGGATTCCCTCTCCACACAAGTCATCTRAAATTTCAATAATAAAAAACAATGTCTATATATCAAGGTCTCGCCTGGGGCTTGGAAAAACGGCTGAGAGAAAATATCATCTATCGGATCGTCCGCTTGCATTAACGAGTCGCATTCTCCTGTTTCACTATTGAATATTTTACCACTAGCGCATTTTCGTTTAGAGAAAGATCTGAAAATCAAAATTTCAGAATTTGAAAATTTTCGAAAACTCTTACCCTTCCAAATTGCAGTATAAATAGGATTCAGGATTTCCTGGATCTGGCTTTTTGATGTTGGAAGTTGGATCACATTCTAATCCTGCTCGGACTAGAAGGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATAACTCACACTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAACATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTAAAAAAGAAAAAAAACAATTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATACCAAGCCATAGTGATAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCAATAGTGAAACAGGAGAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATACCAAGCCATAGTGATAAACAAACCATCTGGACAGCTGCTGATGGAAGGATTGCAGGTAACCGGTGCAGACAGAATTGTTAATGGGATTCCCTCTCCACACAAGTCATCTAAAATTTCAATAATAAAAAACAATGTCTATATATCAAGGTCTCGCCTGGGGCTTGGAAAAACGGCTGAGAGAAAATATCATCTATCGGATCGTCCGCTTGCATTAACGAGTCGCATTCTCCTGTTTCACTATTGAA</canonical_amplicon>
		<polymorphic_amplicon>GAATACCAAGCCATAGTGATAAACAAACCATCTGGACAGCTGCTGATGGAAGGATTGCAGGTAACCGGTGCAGACAGAATTGTTAATGGGATTCCCTCTCCACACAAGTCATCTRAAATTTCAATAATAAAAAACAATGTCTATATATCAAGGTCTCGCCTGGGGCTTGGAAAAACGGCTGAGAGAAAATATCATCTATCGGATCGTCCGCTTGCATTAACGAGTCGCATTCTCCTGTTTCACTATTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21485</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>695029</contig_pos>
        <strand>+</strand>
        <context>AAAAACAATG[C/T]CTATATATCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTCCCTCTCCACACAAGTCATCTAAAATTTCAATAATAAAAAACAATG</left_flank>
        <right_flank>CTATATATCAAGGTCTCGCCTGGGGCTTGGAAAAACGGCTGAGAGAAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACAGGAAAAAAACAAAGTAGACAAATATTTGGCCTTTTGGGTGTACGGGTGGCTAGTGTGTTTTTTTTTTGGAACAAAGAATCATTCTTCTCTATTCGCTGAGGTCACTGTGTTTTCCTTTAGTTTTTAATTCCGGCTTCTTAAGACTTCTGACCACCCAGAAAGTTTATGAAAACTGTGCAAACACGGGGCATCAGAATGGACAAATTTCTTACCTCGATGTATGTAACGCGTCCTTCGCCGCAATTAATCTTGTCATGGGAACTTTTGGCGATTGGAGTTGGGTTCTGACAACAGTAGGAAGAGCCGGTGCGCTCGTAAAATTGACAACTGTATCCTGAAATGAGCATGGGGATAAGAATACCAAGCCATAGTGATAAACAAACCATCTGGACAGCTGCTGATGGAAGGATTGCAGGTAACCGGTGCAGACAGAATTGTTAATGGGATTCCCTCTCCACACAAGTCATCTAAAATTTCAATAATAAAAAACAATGTCTATATATCAAGGTCTCGCCTGGGGCTTGGAAAAACGGCTGAGAGAAAATATCATCTATCGGATCGTCCGCTTGCATTAACGAGTCGCATTCTCCTGTTTCACTATTGAATATTTTACCACTAGCGCATTTTCGTTTAGAGAAAGATCTGAAAATCAAAATTTCAGAATTTGAAAATTTTCGAAAACTCTTACCCTTCCAAATTGCAGTATAAATAGGATTCAGGATTTCCTGGATCTGGCTTTTTGATGTTGGAAGTTGGATCACATTCTAATCCTGCTCGGACTAGAAGGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATAACTCACACTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAACATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTAAAAAAGAAAAAAAACAATTGGAAAACTAAAACGTGAATGGGATATG</canonical>
            <polymorphic>TAACAGGAAAAAAACAAAGTAGACAAATATTTGGCCTTTTGGGTGTACGGGTGGCTAGTGTGTTTTTTTTTTGGAACAAAGAATCATTCTTCTCTATTCGCTGAGGTCACTGTGTTTTCCTTTAGTTTTTAATTCCGGCTTCTTAAGACTTCTGACCACCCAGAAAGTTTATGAAAACTGTGCAAACACGGGGCATCAGAATGGACAAATTTCTTACCTCGATGTATGTAACGCGTCCTTCGCCGCAATTAATCTTGTCATGGGAACTTTTGGCGATTGGAGTTGGGTTCTGACAACAGTAGGAAGAGCCGGTGCGCTCGTAAAATTGACAACTGTATCCTGAAATGAGCATGGGGATAAGAATACCAAGCCATAGTGATAAACAAACCATCTGGACAGCTGCTGATGGAAGGATTGCAGGTAACCGGTGCAGACAGAATTGTTAATGGGATTCCCTCTCCACACAAGTCATCTAAAATTTCAATAATAAAAAACAATGYCTATATATCAAGGTCTCGCCTGGGGCTTGGAAAAACGGCTGAGAGAAAATATCATCTATCGGATCGTCCGCTTGCATTAACGAGTCGCATTCTCCTGTTTCACTATTGAATATTTTACCACTAGCGCATTTTCGTTTAGAGAAAGATCTGAAAATCAAAATTTCAGAATTTGAAAATTTTCGAAAACTCTTACCCTTCCAAATTGCAGTATAAATAGGATTCAGGATTTCCTGGATCTGGCTTTTTGATGTTGGAAGTTGGATCACATTCTAATCCTGCTCGGACTAGAAGGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATAACTCACACTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAACATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTAAAAAAGAAAAAAAACAATTGGAAAACTAAAACGTGAATGGGATATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATACCAAGCCATAGTGATAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCAATAGTGAAACAGGAGAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATACCAAGCCATAGTGATAAACAAACCATCTGGACAGCTGCTGATGGAAGGATTGCAGGTAACCGGTGCAGACAGAATTGTTAATGGGATTCCCTCTCCACACAAGTCATCTAAAATTTCAATAATAAAAAACAATGTCTATATATCAAGGTCTCGCCTGGGGCTTGGAAAAACGGCTGAGAGAAAATATCATCTATCGGATCGTCCGCTTGCATTAACGAGTCGCATTCTCCTGTTTCACTATTGAA</canonical_amplicon>
		<polymorphic_amplicon>GAATACCAAGCCATAGTGATAAACAAACCATCTGGACAGCTGCTGATGGAAGGATTGCAGGTAACCGGTGCAGACAGAATTGTTAATGGGATTCCCTCTCCACACAAGTCATCTAAAATTTCAATAATAAAAAACAATGYCTATATATCAAGGTCTCGCCTGGGGCTTGGAAAAACGGCTGAGAGAAAATATCATCTATCGGATCGTCCGCTTGCATTAACGAGTCGCATTCTCCTGTTTCACTATTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21486</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>695056</contig_pos>
        <strand>+</strand>
        <context>CGCCTGGGGC[C/T]TGGAAAAACG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTCAATAATAAAAAACAATGTCTATATATCAAGGTCTCGCCTGGGGC</left_flank>
        <right_flank>TGGAAAAACGGCTGAGAGAAAATATCATCTATCGGATCGTCCGCTTGCAT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTGGCCTTTTGGGTGTACGGGTGGCTAGTGTGTTTTTTTTTTGGAACAAAGAATCATTCTTCTCTATTCGCTGAGGTCACTGTGTTTTCCTTTAGTTTTTAATTCCGGCTTCTTAAGACTTCTGACCACCCAGAAAGTTTATGAAAACTGTGCAAACACGGGGCATCAGAATGGACAAATTTCTTACCTCGATGTATGTAACGCGTCCTTCGCCGCAATTAATCTTGTCATGGGAACTTTTGGCGATTGGAGTTGGGTTCTGACAACAGTAGGAAGAGCCGGTGCGCTCGTAAAATTGACAACTGTATCCTGAAATGAGCATGGGGATAAGAATACCAAGCCATAGTGATAAACAAACCATCTGGACAGCTGCTGATGGAAGGATTGCAGGTAACCGGTGCAGACAGAATTGTTAATGGGATTCCCTCTCCACACAAGTCATCTAAAATTTCAATAATAAAAAACAATGTCTATATATCAAGGTCTCGCCTGGGGCTTGGAAAAACGGCTGAGAGAAAATATCATCTATCGGATCGTCCGCTTGCATTAACGAGTCGCATTCTCCTGTTTCACTATTGAATATTTTACCACTAGCGCATTTTCGTTTAGAGAAAGATCTGAAAATCAAAATTTCAGAATTTGAAAATTTTCGAAAACTCTTACCCTTCCAAATTGCAGTATAAATAGGATTCAGGATTTCCTGGATCTGGCTTTTTGATGTTGGAAGTTGGATCACATTCTAATCCTGCTCGGACTAGAAGGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATAACTCACACTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAACATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTAAAAAAGAAAAAAAACAATTGGAAAACTAAAACGTGAATGGGATATGGACCCCACACTAAGACGATATATATGA</canonical>
            <polymorphic>TATTTGGCCTTTTGGGTGTACGGGTGGCTAGTGTGTTTTTTTTTTGGAACAAAGAATCATTCTTCTCTATTCGCTGAGGTCACTGTGTTTTCCTTTAGTTTTTAATTCCGGCTTCTTAAGACTTCTGACCACCCAGAAAGTTTATGAAAACTGTGCAAACACGGGGCATCAGAATGGACAAATTTCTTACCTCGATGTATGTAACGCGTCCTTCGCCGCAATTAATCTTGTCATGGGAACTTTTGGCGATTGGAGTTGGGTTCTGACAACAGTAGGAAGAGCCGGTGCGCTCGTAAAATTGACAACTGTATCCTGAAATGAGCATGGGGATAAGAATACCAAGCCATAGTGATAAACAAACCATCTGGACAGCTGCTGATGGAAGGATTGCAGGTAACCGGTGCAGACAGAATTGTTAATGGGATTCCCTCTCCACACAAGTCATCTAAAATTTCAATAATAAAAAACAATGTCTATATATCAAGGTCTCGCCTGGGGCYTGGAAAAACGGCTGAGAGAAAATATCATCTATCGGATCGTCCGCTTGCATTAACGAGTCGCATTCTCCTGTTTCACTATTGAATATTTTACCACTAGCGCATTTTCGTTTAGAGAAAGATCTGAAAATCAAAATTTCAGAATTTGAAAATTTTCGAAAACTCTTACCCTTCCAAATTGCAGTATAAATAGGATTCAGGATTTCCTGGATCTGGCTTTTTGATGTTGGAAGTTGGATCACATTCTAATCCTGCTCGGACTAGAAGGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATAACTCACACTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAACATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTAAAAAAGAAAAAAAACAATTGGAAAACTAAAACGTGAATGGGATATGGACCCCACACTAAGACGATATATATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>287 202 170 126 84 62 29 20 13 7</canonical_bands>
                <polymorphic_bands>287 202 170 139 84 62 29 20 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATACCAAGCCATAGTGATAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCAATAGTGAAACAGGAGAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATACCAAGCCATAGTGATAAACAAACCATCTGGACAGCTGCTGATGGAAGGATTGCAGGTAACCGGTGCAGACAGAATTGTTAATGGGATTCCCTCTCCACACAAGTCATCTAAAATTTCAATAATAAAAAACAATGTCTATATATCAAGGTCTCGCCTGGGGCTTGGAAAAACGGCTGAGAGAAAATATCATCTATCGGATCGTCCGCTTGCATTAACGAGTCGCATTCTCCTGTTTCACTATTGAA</canonical_amplicon>
		<polymorphic_amplicon>GAATACCAAGCCATAGTGATAAACAAACCATCTGGACAGCTGCTGATGGAAGGATTGCAGGTAACCGGTGCAGACAGAATTGTTAATGGGATTCCCTCTCCACACAAGTCATCTAAAATTTCAATAATAAAAAACAATGTCTATATATCAAGGTCTCGCCTGGGGCYTGGAAAAACGGCTGAGAGAAAATATCATCTATCGGATCGTCCGCTTGCATTAACGAGTCGCATTCTCCTGTTTCACTATTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21487</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>695174</contig_pos>
        <strand>+</strand>
        <context>TTTAGAGAAA[A/G]ATCTGAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGTTTCACTATTGAATATTTTACCACTAGCGCATTTTCGTTTAGAGAAA</left_flank>
        <right_flank>ATCTGAAAATCAAAATTTCAGAATTTGAAAATTTTCGAAAACTCTTACCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGACTTCTGACCACCCAGAAAGTTTATGAAAACTGTGCAAACACGGGGCATCAGAATGGACAAATTTCTTACCTCGATGTATGTAACGCGTCCTTCGCCGCAATTAATCTTGTCATGGGAACTTTTGGCGATTGGAGTTGGGTTCTGACAACAGTAGGAAGAGCCGGTGCGCTCGTAAAATTGACAACTGTATCCTGAAATGAGCATGGGGATAAGAATACCAAGCCATAGTGATAAACAAACCATCTGGACAGCTGCTGATGGAAGGATTGCAGGTAACCGGTGCAGACAGAATTGTTAATGGGATTCCCTCTCCACACAAGTCATCTAAAATTTCAATAATAAAAAACAATGTCTATATATCAAGGTCTCGCCTGGGGCTTGGAAAAACGGCTGAGAGAAAATATCATCTATCGGATCGTCCGCTTGCATTAACGAGTCGCATTCTCCTGTTTCACTATTGAATATTTTACCACTAGCGCATTTTCGTTTAGAGAAAGATCTGAAAATCAAAATTTCAGAATTTGAAAATTTTCGAAAACTCTTACCCTTCCAAATTGCAGTATAAATAGGATTCAGGATTTCCTGGATCTGGCTTTTTGATGTTGGAAGTTGGATCACATTCTAATCCTGCTCGGACTAGAAGGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATAACTCACACTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAACATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTAAAAAAGAAAAAAAACAATTGGAAAACTAAAACGTGAATGGGATATGGACCCCACACTAAGACGATATATATGACTGATGGGGTGGAGGTGGCCGAACACGGGGCTTCAAGTAGGCACATGCCCTGCCCTCCTTCTTCAGAACACGAAACCGGCTCCGTGTACCGCCCCATCGCTCCCCTCCGCGCTACGGT</canonical>
            <polymorphic>AGACTTCTGACCACCCAGAAAGTTTATGAAAACTGTGCAAACACGGGGCATCAGAATGGACAAATTTCTTACCTCGATGTATGTAACGCGTCCTTCGCCGCAATTAATCTTGTCATGGGAACTTTTGGCGATTGGAGTTGGGTTCTGACAACAGTAGGAAGAGCCGGTGCGCTCGTAAAATTGACAACTGTATCCTGAAATGAGCATGGGGATAAGAATACCAAGCCATAGTGATAAACAAACCATCTGGACAGCTGCTGATGGAAGGATTGCAGGTAACCGGTGCAGACAGAATTGTTAATGGGATTCCCTCTCCACACAAGTCATCTAAAATTTCAATAATAAAAAACAATGTCTATATATCAAGGTCTCGCCTGGGGCTTGGAAAAACGGCTGAGAGAAAATATCATCTATCGGATCGTCCGCTTGCATTAACGAGTCGCATTCTCCTGTTTCACTATTGAATATTTTACCACTAGCGCATTTTCGTTTAGAGAAARATCTGAAAATCAAAATTTCAGAATTTGAAAATTTTCGAAAACTCTTACCCTTCCAAATTGCAGTATAAATAGGATTCAGGATTTCCTGGATCTGGCTTTTTGATGTTGGAAGTTGGATCACATTCTAATCCTGCTCGGACTAGAAGGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATAACTCACACTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAACATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTAAAAAAGAAAAAAAACAATTGGAAAACTAAAACGTGAATGGGATATGGACCCCACACTAAGACGATATATATGACTGATGGGGTGGAGGTGGCCGAACACGGGGCTTCAAGTAGGCACATGCCCTGCCCTCCTTCTTCAGAACACGAAACCGGCTCCGTGTACCGCCCCATCGCTCCCCTCCGCGCTACGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>416 385 89 83 27</canonical_bands>
                <polymorphic_bands>416 385 172 27</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>499 412 89</canonical_bands>
                <polymorphic_bands>588 412</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACGGCTGAGAGAAAATATC</pcr_primer_p1>
		<pcr_primer_p2>AGGATTAGAATGTGATCCAACTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAACGGCTGAGAGAAAATATCATCTATCGGATCGTCCGCTTGCATTAACGAGTCGCATTCTCCTGTTTCACTATTGAATATTTTACCACTAGCGCATTTTCGTTTAGAGAAAGATCTGAAAATCAAAATTTCAGAATTTGAAAATTTTCGAAAACTCTTACCCTTCCAAATTGCAGTATAAATAGGATTCAGGATTTCCTGGATCTGGCTTTTTGATGTTGGAAGTTGGATCACATTCTAATCCT</canonical_amplicon>
		<polymorphic_amplicon>AAACGGCTGAGAGAAAATATCATCTATCGGATCGTCCGCTTGCATTAACGAGTCGCATTCTCCTGTTTCACTATTGAATATTTTACCACTAGCGCATTTTCGTTTAGAGAAARATCTGAAAATCAAAATTTCAGAATTTGAAAATTTTCGAAAACTCTTACCCTTCCAAATTGCAGTATAAATAGGATTCAGGATTTCCTGGATCTGGCTTTTTGATGTTGGAAGTTGGATCACATTCTAATCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21488</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>695440</contig_pos>
        <strand>+</strand>
        <context>AAAAAGGAAA[A/C]ATTTGAGAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAA</left_flank>
        <right_flank>ATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTAAAAAAGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATTGCAGGTAACCGGTGCAGACAGAATTGTTAATGGGATTCCCTCTCCACACAAGTCATCTAAAATTTCAATAATAAAAAACAATGTCTATATATCAAGGTCTCGCCTGGGGCTTGGAAAAACGGCTGAGAGAAAATATCATCTATCGGATCGTCCGCTTGCATTAACGAGTCGCATTCTCCTGTTTCACTATTGAATATTTTACCACTAGCGCATTTTCGTTTAGAGAAAGATCTGAAAATCAAAATTTCAGAATTTGAAAATTTTCGAAAACTCTTACCCTTCCAAATTGCAGTATAAATAGGATTCAGGATTTCCTGGATCTGGCTTTTTGATGTTGGAAGTTGGATCACATTCTAATCCTGCTCGGACTAGAAGGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATAACTCACACTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAACATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTAAAAAAGAAAAAAAACAATTGGAAAACTAAAACGTGAATGGGATATGGACCCCACACTAAGACGATATATATGACTGATGGGGTGGAGGTGGCCGAACACGGGGCTTCAAGTAGGCACATGCCCTGCCCTCCTTCTTCAGAACACGAAACCGGCTCCGTGTACCGCCCCATCGCTCCCCTCCGCGCTACGGTCAAGCCACCGGAGCTGCTGGTGTGGCTGCTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGGCGCCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGA</canonical>
            <polymorphic>GGATTGCAGGTAACCGGTGCAGACAGAATTGTTAATGGGATTCCCTCTCCACACAAGTCATCTAAAATTTCAATAATAAAAAACAATGTCTATATATCAAGGTCTCGCCTGGGGCTTGGAAAAACGGCTGAGAGAAAATATCATCTATCGGATCGTCCGCTTGCATTAACGAGTCGCATTCTCCTGTTTCACTATTGAATATTTTACCACTAGCGCATTTTCGTTTAGAGAAAGATCTGAAAATCAAAATTTCAGAATTTGAAAATTTTCGAAAACTCTTACCCTTCCAAATTGCAGTATAAATAGGATTCAGGATTTCCTGGATCTGGCTTTTTGATGTTGGAAGTTGGATCACATTCTAATCCTGCTCGGACTAGAAGGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATAACTCACACTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAAMATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTAAAAAAGAAAAAAAACAATTGGAAAACTAAAACGTGAATGGGATATGGACCCCACACTAAGACGATATATATGACTGATGGGGTGGAGGTGGCCGAACACGGGGCTTCAAGTAGGCACATGCCCTGCCCTCCTTCTTCAGAACACGAAACCGGCTCCGTGTACCGCCCCATCGCTCCCCTCCGCGCTACGGTCAAGCCACCGGAGCTGCTGGTGTGGCTGCTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGGCGCCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAAGTTGGATCACATTCT</pcr_primer_p1>
		<pcr_primer_p2>ATATCCCATTCACGTTTTAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGGAAGTTGGATCACATTCTAATCCTGCTCGGACTAGAAGGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATAACTCACACTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAACATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTAAAAAAGAAAAAAAACAATTGGAAAACTAAAACGTGAATGGGATAT</canonical_amplicon>
		<polymorphic_amplicon>TGGAAGTTGGATCACATTCTAATCCTGCTCGGACTAGAAGGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATAACTCACACTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAAMATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTAAAAAAGAAAAAAAACAATTGGAAAACTAAAACGTGAATGGGATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21489</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>695498</contig_pos>
        <strand></strand>
        <context>AGAAAAAAAA[C/T]AATTGGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGAAACACTGAATAGAATTTCACGCCACTTGAGTAAAAAAGAAAAAAAA</left_flank>
        <right_flank>AATTGGAAAACTAAAACGTGAATGGGATATGGACCCCACACTAAGACGAT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCTAAAATTTCAATAATAAAAAACAATGTCTATATATCAAGGTCTCGCCTGGGGCTTGGAAAAACGGCTGAGAGAAAATATCATCTATCGGATCGTCCGCTTGCATTAACGAGTCGCATTCTCCTGTTTCACTATTGAATATTTTACCACTAGCGCATTTTCGTTTAGAGAAAGATCTGAAAATCAAAATTTCAGAATTTGAAAATTTTCGAAAACTCTTACCCTTCCAAATTGCAGTATAAATAGGATTCAGGATTTCCTGGATCTGGCTTTTTGATGTTGGAAGTTGGATCACATTCTAATCCTGCTCGGACTAGAAGGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATAACTCACACTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAACATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTAAAAAAGAAAAAAAACAATTGGAAAACTAAAACGTGAATGGGATATGGACCCCACACTAAGACGATATATATGACTGATGGGGTGGAGGTGGCCGAACACGGGGCTTCAAGTAGGCACATGCCCTGCCCTCCTTCTTCAGAACACGAAACCGGCTCCGTGTACCGCCCCATCGCTCCCCTCCGCGCTACGGTCAAGCCACCGGAGCTGCTGGTGTGGCTGCTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGGCGCCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATCGGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCAATGAACCAGGGCACG</canonical>
            <polymorphic>CATCTAAAATTTCAATAATAAAAAACAATGTCTATATATCAAGGTCTCGCCTGGGGCTTGGAAAAACGGCTGAGAGAAAATATCATCTATCGGATCGTCCGCTTGCATTAACGAGTCGCATTCTCCTGTTTCACTATTGAATATTTTACCACTAGCGCATTTTCGTTTAGAGAAAGATCTGAAAATCAAAATTTCAGAATTTGAAAATTTTCGAAAACTCTTACCCTTCCAAATTGCAGTATAAATAGGATTCAGGATTTCCTGGATCTGGCTTTTTGATGTTGGAAGTTGGATCACATTCTAATCCTGCTCGGACTAGAAGGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATAACTCACACTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAACATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTAAAAAAGAAAAAAAAYAATTGGAAAACTAAAACGTGAATGGGATATGGACCCCACACTAAGACGATATATATGACTGATGGGGTGGAGGTGGCCGAACACGGGGCTTCAAGTAGGCACATGCCCTGCCCTCCTTCTTCAGAACACGAAACCGGCTCCGTGTACCGCCCCATCGCTCCCCTCCGCGCTACGGTCAAGCCACCGGAGCTGCTGGTGTGGCTGCTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGGCGCCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATCGGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCAATGAACCAGGGCACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGACTAGAAGGATTACTGTGGA</pcr_primer_p1>
		<pcr_primer_p2>TCAGTCATATATATCGTCTTAGTGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGACTAGAAGGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATAACTCACACTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAACATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTAAAAAAGAAAAAAAACAATTGGAAAACTAAAACGTGAATGGGATATGGACCCCACACTAAGACGATATATATGACTGA</canonical_amplicon>
		<polymorphic_amplicon>GGACTAGAAGGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATAACTCACACTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAACATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTAAAAAAGAAAAAAAAYAATTGGAAAACTAAAACGTGAATGGGATATGGACCCCACACTAAGACGATATATATGACTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21490</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>695618</contig_pos>
        <strand>+</strand>
        <context>GCCCTCCTTC[C/T]TCAGAACACG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGGTGGCCGAACACGGGGCTTCAAGTAGGCACATGCCCTGCCCTCCTTC</left_flank>
        <right_flank>TCAGAACACGAAACCGGCTCCGTGTACCGCCCCATCGCTCCCCTCCGCGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTCCTGTTTCACTATTGAATATTTTACCACTAGCGCATTTTCGTTTAGAGAAAGATCTGAAAATCAAAATTTCAGAATTTGAAAATTTTCGAAAACTCTTACCCTTCCAAATTGCAGTATAAATAGGATTCAGGATTTCCTGGATCTGGCTTTTTGATGTTGGAAGTTGGATCACATTCTAATCCTGCTCGGACTAGAAGGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATAACTCACACTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAACATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTAAAAAAGAAAAAAAACAATTGGAAAACTAAAACGTGAATGGGATATGGACCCCACACTAAGACGATATATATGACTGATGGGGTGGAGGTGGCCGAACACGGGGCTTCAAGTAGGCACATGCCCTGCCCTCCTTCTTCAGAACACGAAACCGGCTCCGTGTACCGCCCCATCGCTCCCCTCCGCGCTACGGTCAAGCCACCGGAGCTGCTGGTGTGGCTGCTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGGCGCCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATCGGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCAATGAACCAGGGCACGGAAGGAAAGACGACGCAACAGGAACAGGAAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAA</canonical>
            <polymorphic>TTCTCCTGTTTCACTATTGAATATTTTACCACTAGCGCATTTTCGTTTAGAGAAAGATCTGAAAATCAAAATTTCAGAATTTGAAAATTTTCGAAAACTCTTACCCTTCCAAATTGCAGTATAAATAGGATTCAGGATTTCCTGGATCTGGCTTTTTGATGTTGGAAGTTGGATCACATTCTAATCCTGCTCGGACTAGAAGGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATAACTCACACTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAACATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTAAAAAAGAAAAAAAACAATTGGAAAACTAAAACGTGAATGGGATATGGACCCCACACTAAGACGATATATATGACTGATGGGGTGGAGGTGGCCGAACACGGGGCTTCAAGTAGGCACATGCCCTGCCCTCCTTCYTCAGAACACGAAACCGGCTCCGTGTACCGCCCCATCGCTCCCCTCCGCGCTACGGTCAAGCCACCGGAGCTGCTGGTGTGGCTGCTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGGCGCCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATCGGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCAATGAACCAGGGCACGGAAGGAAAGACGACGCAACAGGAACAGGAAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATATGACTGATGGGGTGGA</pcr_primer_p1>
		<pcr_primer_p2>CCGTCTCGAAATAGTGTGAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TATATGACTGATGGGGTGGAGGTGGCCGAACACGGGGCTTCAAGTAGGCACATGCCCTGCCCTCCTTCTTCAGAACACGAAACCGGCTCCGTGTACCGCCCCATCGCTCCCCTCCGCGCTACGGTCAAGCCACCGGAGCTGCTGGTGTGGCTGCTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGG</canonical_amplicon>
		<polymorphic_amplicon>TATATGACTGATGGGGTGGAGGTGGCCGAACACGGGGCTTCAAGTAGGCACATGCCCTGCCCTCCTTCYTCAGAACACGAAACCGGCTCCGTGTACCGCCCCATCGCTCCCCTCCGCGCTACGGTCAAGCCACCGGAGCTGCTGGTGTGGCTGCTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21491</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>695657</contig_pos>
        <strand>+</strand>
        <context>GCCCCATCGC[G/T]CCCCTCCGCG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGCCCTCCTTCTTCAGAACACGAAACCGGCTCCGTGTACCGCCCCATCGC</left_flank>
        <right_flank>CCCCTCCGCGCTACGGTCAAGCCACCGGAGCTGCTGGTGTGGCTGCTACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCGTTTAGAGAAAGATCTGAAAATCAAAATTTCAGAATTTGAAAATTTTCGAAAACTCTTACCCTTCCAAATTGCAGTATAAATAGGATTCAGGATTTCCTGGATCTGGCTTTTTGATGTTGGAAGTTGGATCACATTCTAATCCTGCTCGGACTAGAAGGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATAACTCACACTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAACATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTAAAAAAGAAAAAAAACAATTGGAAAACTAAAACGTGAATGGGATATGGACCCCACACTAAGACGATATATATGACTGATGGGGTGGAGGTGGCCGAACACGGGGCTTCAAGTAGGCACATGCCCTGCCCTCCTTCTTCAGAACACGAAACCGGCTCCGTGTACCGCCCCATCGCTCCCCTCCGCGCTACGGTCAAGCCACCGGAGCTGCTGGTGTGGCTGCTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGGCGCCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATCGGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCAATGAACCAGGGCACGGAAGGAAAGACGACGCAACAGGAACAGGAAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAAT</canonical>
            <polymorphic>TTTTCGTTTAGAGAAAGATCTGAAAATCAAAATTTCAGAATTTGAAAATTTTCGAAAACTCTTACCCTTCCAAATTGCAGTATAAATAGGATTCAGGATTTCCTGGATCTGGCTTTTTGATGTTGGAAGTTGGATCACATTCTAATCCTGCTCGGACTAGAAGGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATAACTCACACTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAACATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTAAAAAAGAAAAAAAACAATTGGAAAACTAAAACGTGAATGGGATATGGACCCCACACTAAGACGATATATATGACTGATGGGGTGGAGGTGGCCGAACACGGGGCTTCAAGTAGGCACATGCCCTGCCCTCCTTCTTCAGAACACGAAACCGGCTCCGTGTACCGCCCCATCGCKCCCCTCCGCGCTACGGTCAAGCCACCGGAGCTGCTGGTGTGGCTGCTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGGCGCCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATCGGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCAATGAACCAGGGCACGGAAGGAAAGACGACGCAACAGGAACAGGAAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATATGACTGATGGGGTGGA</pcr_primer_p1>
		<pcr_primer_p2>CCGTCTCGAAATAGTGTGAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TATATGACTGATGGGGTGGAGGTGGCCGAACACGGGGCTTCAAGTAGGCACATGCCCTGCCCTCCTTCTTCAGAACACGAAACCGGCTCCGTGTACCGCCCCATCGCTCCCCTCCGCGCTACGGTCAAGCCACCGGAGCTGCTGGTGTGGCTGCTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGG</canonical_amplicon>
		<polymorphic_amplicon>TATATGACTGATGGGGTGGAGGTGGCCGAACACGGGGCTTCAAGTAGGCACATGCCCTGCCCTCCTTCTTCAGAACACGAAACCGGCTCCGTGTACCGCCCCATCGCKCCCCTCCGCGCTACGGTCAAGCCACCGGAGCTGCTGGTGTGGCTGCTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21492</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>695758</contig_pos>
        <strand>+</strand>
        <context>CAACATGACC[C/G]AGGATCCTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACC</left_flank>
        <right_flank>AGGATCCTCCACCTGGTGTCACACTATTTCGAGACGGCGCCCGCCTGTTT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTGGATCTGGCTTTTTGATGTTGGAAGTTGGATCACATTCTAATCCTGCTCGGACTAGAAGGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATAACTCACACTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAACATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTAAAAAAGAAAAAAAACAATTGGAAAACTAAAACGTGAATGGGATATGGACCCCACACTAAGACGATATATATGACTGATGGGGTGGAGGTGGCCGAACACGGGGCTTCAAGTAGGCACATGCCCTGCCCTCCTTCTTCAGAACACGAAACCGGCTCCGTGTACCGCCCCATCGCTCCCCTCCGCGCTACGGTCAAGCCACCGGAGCTGCTGGTGTGGCTGCTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGGCGCCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATCGGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCAATGAACCAGGGCACGGAAGGAAAGACGACGCAACAGGAACAGGAAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCG</canonical>
            <polymorphic>CCTGGATCTGGCTTTTTGATGTTGGAAGTTGGATCACATTCTAATCCTGCTCGGACTAGAAGGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATAACTCACACTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAACATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTAAAAAAGAAAAAAAACAATTGGAAAACTAAAACGTGAATGGGATATGGACCCCACACTAAGACGATATATATGACTGATGGGGTGGAGGTGGCCGAACACGGGGCTTCAAGTAGGCACATGCCCTGCCCTCCTTCTTCAGAACACGAAACCGGCTCCGTGTACCGCCCCATCGCTCCCCTCCGCGCTACGGTCAAGCCACCGGAGCTGCTGGTGTGGCTGCTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCSAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGGCGCCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATCGGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCAATGAACCAGGGCACGGAAGGAAAGACGACGCAACAGGAACAGGAAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>498 270 219 13</canonical_bands>
                <polymorphic_bands>511 270 219</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>498 270 219 13</canonical_bands>
                <polymorphic_bands>511 270 219</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTACAGGCAAACAGCTCAAC</pcr_primer_p1>
		<pcr_primer_p2>GATTCTTCTTCCCATAGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGGCGCCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATC</canonical_amplicon>
		<polymorphic_amplicon>CTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCSAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGGCGCCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21493</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>695798</contig_pos>
        <strand>+</strand>
        <context>CGAGACGGCG[C/G]CCGCCTGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGGCG</left_flank>
        <right_flank>CCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGC</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAATCCTGCTCGGACTAGAAGGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATAACTCACACTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAACATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTAAAAAAGAAAAAAAACAATTGGAAAACTAAAACGTGAATGGGATATGGACCCCACACTAAGACGATATATATGACTGATGGGGTGGAGGTGGCCGAACACGGGGCTTCAAGTAGGCACATGCCCTGCCCTCCTTCTTCAGAACACGAAACCGGCTCCGTGTACCGCCCCATCGCTCCCCTCCGCGCTACGGTCAAGCCACCGGAGCTGCTGGTGTGGCTGCTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGGCGCCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATCGGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCAATGAACCAGGGCACGGAAGGAAAGACGACGCAACAGGAACAGGAAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAAC</canonical>
            <polymorphic>CTAATCCTGCTCGGACTAGAAGGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATAACTCACACTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAACATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTAAAAAAGAAAAAAAACAATTGGAAAACTAAAACGTGAATGGGATATGGACCCCACACTAAGACGATATATATGACTGATGGGGTGGAGGTGGCCGAACACGGGGCTTCAAGTAGGCACATGCCCTGCCCTCCTTCTTCAGAACACGAAACCGGCTCCGTGTACCGCCCCATCGCTCCCCTCCGCGCTACGGTCAAGCCACCGGAGCTGCTGGTGTGGCTGCTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGGCGSCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATCGGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCAATGAACCAGGGCACGGAAGGAAAGACGACGCAACAGGAACAGGAAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>452 397 99 52</canonical_bands>
                <polymorphic_bands>452 449 99</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>369 345 135 69 61 21</canonical_bands>
                <polymorphic_bands>369 345 135 82 69</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCGCC</site>
                <isoschizomers>
                    <enzyme>BbeI</enzyme>
                    <enzyme>EgeI</enzyme>
                    <enzyme>EheI</enzyme>
                    <enzyme>KasI</enzyme>
                    <enzyme>Mly113I</enzyme>
                    <enzyme>NarI</enzyme>
                    <enzyme>SfoI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>450 132 126 105 101 52 34</canonical_bands>
                <polymorphic_bands>450 132 126 105 101 86</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>500 479 21</canonical_bands>
                <polymorphic_bands>521 479</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTACAGGCAAACAGCTCAAC</pcr_primer_p1>
		<pcr_primer_p2>GATTCTTCTTCCCATAGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGGCGCCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATC</canonical_amplicon>
		<polymorphic_amplicon>CTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGGCGSCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21494</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>695819</contig_pos>
        <strand>+</strand>
        <context>TTAATTGGCG[C/T]TATGCCTTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCTGGTGTCACACTATTTCGAGACGGCGCCCGCCTGTTTTTAATTGGCG</left_flank>
        <right_flank>TATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATAACTCACACTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAACATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTAAAAAAGAAAAAAAACAATTGGAAAACTAAAACGTGAATGGGATATGGACCCCACACTAAGACGATATATATGACTGATGGGGTGGAGGTGGCCGAACACGGGGCTTCAAGTAGGCACATGCCCTGCCCTCCTTCTTCAGAACACGAAACCGGCTCCGTGTACCGCCCCATCGCTCCCCTCCGCGCTACGGTCAAGCCACCGGAGCTGCTGGTGTGGCTGCTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGGCGCCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATCGGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCAATGAACCAGGGCACGGAAGGAAAGACGACGCAACAGGAACAGGAAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATT</canonical>
            <polymorphic>GGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATAACTCACACTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAACATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTAAAAAAGAAAAAAAACAATTGGAAAACTAAAACGTGAATGGGATATGGACCCCACACTAAGACGATATATATGACTGATGGGGTGGAGGTGGCCGAACACGGGGCTTCAAGTAGGCACATGCCCTGCCCTCCTTCTTCAGAACACGAAACCGGCTCCGTGTACCGCCCCATCGCTCCCCTCCGCGCTACGGTCAAGCCACCGGAGCTGCTGGTGTGGCTGCTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGGCGCCCGCCTGTTTTTAATTGGCGYTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATCGGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCAATGAACCAGGGCACGGAAGGAAAGACGACGCAACAGGAACAGGAAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>366 348 135 69 61 21</canonical_bands>
                <polymorphic_bands>366 348 156 69 61</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>500 479 21</canonical_bands>
                <polymorphic_bands>521 479</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTACAGGCAAACAGCTCAAC</pcr_primer_p1>
		<pcr_primer_p2>GATTCTTCTTCCCATAGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGGCGCCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATC</canonical_amplicon>
		<polymorphic_amplicon>CTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGGCGCCCGCCTGTTTTTAATTGGCGYTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21495</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>696324</contig_pos>
        <strand></strand>
        <context>CACATTTCAG[C/T]CGAATTTTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAG</left_flank>
        <right_flank>CGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATCGGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCAATGAACCAGGGCACGGAAGGAAAGACGACGCAACAGGAACAGGAAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGC</canonical>
            <polymorphic>CTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATCGGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCAATGAACCAGGGCACGGAAGGAAAGACGACGCAACAGGAACAGGAAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGYCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>200 153 144 124 98 94 79 40 37 31</canonical_bands>
                <polymorphic_bands>279 153 144 124 98 94 40 37 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATAAGCGTTTCAGCAGATAAT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTTCTCAAGTGTTTTCAGAT</pcr_primer_p2>
		<pcr_amplicon_size>422</pcr_amplicon_size>
		<canonical_amplicon>GATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACA</canonical_amplicon>
		<polymorphic_amplicon>GATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGYCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21496</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>696293</contig_pos>
        <strand></strand>
        <context>AAACYACTAA[T/C]TTAACAAGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAA</left_flank>
        <right_flank>TTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCGCCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATCGGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCAATGAACCAGGGCACGGAAGGAAAGACGACGCAACAGGAACAGGAAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAA</canonical>
            <polymorphic>GGCGCCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATCGGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCAATGAACCAGGGCACGGAAGGAAAGACGACGCAACAGGAACAGGAAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAAYTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>246 82 78 74 58 55 51 49 48 44 36 36 36 34 26 21 17 9</canonical_bands>
                <polymorphic_bands>246 82 78 74 58 57 55 51 49 48 44 36 36 34 26 17 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATAATCCAGCTCAATAACATC</pcr_primer_p1>
		<pcr_primer_p2>TTACTGTAGAGCAATCATATTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAA</canonical_amplicon>
		<polymorphic_amplicon>ACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAAYTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21497</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>696287</contig_pos>
        <strand></strand>
        <context>GYAAAAAAAC[T/C]ACTAAYTTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAAC</left_flank>
        <right_flank>ACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGACGGCGCCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATCGGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCAATGAACCAGGGCACGGAAGGAAAGACGACGCAACAGGAACAGGAAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGT</canonical>
            <polymorphic>CGAGACGGCGCCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATCGGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCAATGAACCAGGGCACGGAAGGAAAGACGACGCAACAGGAACAGGAAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACYACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATAATCCAGCTCAATAACATC</pcr_primer_p1>
		<pcr_primer_p2>TTACTGTAGAGCAATCATATTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAA</canonical_amplicon>
		<polymorphic_amplicon>ACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACYACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21498</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>696278</contig_pos>
        <strand>+</strand>
        <context>ATAATTATTG[C/T/G/A]AAAAAAACYA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T/G/A</alleles>
        <left_flank>TCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTG</left_flank>
        <right_flank>AAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACTATTTCGAGACGGCGCCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATCGGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCAATGAACCAGGGCACGGAAGGAAAGACGACGCAACAGGAACAGGAAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTT</canonical>
            <polymorphic>ACACTATTTCGAGACGGCGCCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATCGGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCAATGAACCAGGGCACGGAAGGAAAGACGACGCAACAGGAACAGGAAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGYAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATAATCCAGCTCAATAACATC</pcr_primer_p1>
		<pcr_primer_p2>TTACTGTAGAGCAATCATATTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAA</canonical_amplicon>
		<polymorphic_amplicon>ACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGYAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21499</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>696167</contig_pos>
        <strand>+</strand>
        <context>TCTGTTATCT[G/T]TTTAGACTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCT</left_flank>
        <right_flank>TTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACGGTCAAGCCACCGGAGCTGCTGGTGTGGCTGCTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGGCGCCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATCGGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCAATGAACCAGGGCACGGAAGGAAAGACGACGCAACAGGAACAGGAAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGA</canonical>
            <polymorphic>CTACGGTCAAGCCACCGGAGCTGCTGGTGTGGCTGCTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGGCGCCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATCGGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCAATGAACCAGGGCACGGAAGGAAAGACGACGCAACAGGAACAGGAAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTKTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTTTTCGAAATGTGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATAATTATCTGCTGAAACGCTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTAT</canonical_amplicon>
		<polymorphic_amplicon>AAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTKTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21500</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>696143</contig_pos>
        <strand>+</strand>
        <context>ATCGTTTTTT[A/T]AATTTCTCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTT</left_flank>
        <right_flank>AATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCGCCCCATCGCTCCCCTCCGCGCTACGGTCAAGCCACCGGAGCTGCTGGTGTGGCTGCTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGGCGCCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATCGGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCAATGAACCAGGGCACGGAAGGAAAGACGACGCAACAGGAACAGGAAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATT</canonical>
            <polymorphic>ACCGCCCCATCGCTCCCCTCCGCGCTACGGTCAAGCCACCGGAGCTGCTGGTGTGGCTGCTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGGCGCCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATCGGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCAATGAACCAGGGCACGGAAGGAAAGACGACGCAACAGGAACAGGAAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTWAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>500 277 183 26 14</canonical_bands>
                <polymorphic_bands>683 277 26 14</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>349 332 166 97 56</canonical_bands>
                <polymorphic_bands>388 349 166 97</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTTTTCGAAATGTGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATAATTATCTGCTGAAACGCTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTAT</canonical_amplicon>
		<polymorphic_amplicon>AAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTWAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21501</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>696609</contig_pos>
        <strand>+</strand>
        <context>TACTGAATTT[C/T]GTAATATCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTT</left_flank>
        <right_flank>GTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTGTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAACAAAATGCGCATTTTTCTAAGGGGACGTGATTGTTAGGAATGTTTCAAAGATCAGAGCAAATCAGGGGATCGGATTCATTTTTTGTCTTCAGTTTGGTTTTAAAACCACGTCATTATAAAAGTGAAATAATACCAGTTTCTTCTTGAAACAACACTGTACTTTGTGCTTCCTAGTTCCTTGCGAATCACTTGAGGAATAA</canonical>
            <polymorphic>TAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTYGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTGTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAACAAAATGCGCATTTTTCTAAGGGGACGTGATTGTTAGGAATGTTTCAAAGATCAGAGCAAATCAGGGGATCGGATTCATTTTTTGTCTTCAGTTTGGTTTTAAAACCACGTCATTATAAAAGTGAAATAATACCAGTTTCTTCTTGAAACAACACTGTACTTTGTGCTTCCTAGTTCCTTGCGAATCACTTGAGGAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATTGCTCTACAGTAAATTATCC</pcr_primer_p1>
		<pcr_primer_p2>TGTTTTCTCAAGTGTTTTCAGAT</pcr_primer_p2>
		<pcr_amplicon_size>326</pcr_amplicon_size>
		<canonical_amplicon>TGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACA</canonical_amplicon>
		<polymorphic_amplicon>TGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTYGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21502</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>696999</contig_pos>
        <strand>+</strand>
        <context>TTTTTGTCTT[C/T]AGTTTGGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGTTTCAAAGATCAGAGCAAATCAGGGGATCGGATTCATTTTTTGTCTT</left_flank>
        <right_flank>AGTTTGGTTTTAAAACCACGTCATTATAAAAGTGAAATAATACCAGTTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTGTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAACAAAATGCGCATTTTTCTAAGGGGACGTGATTGTTAGGAATGTTTCAAAGATCAGAGCAAATCAGGGGATCGGATTCATTTTTTGTCTTCAGTTTGGTTTTAAAACCACGTCATTATAAAAGTGAAATAATACCAGTTTCTTCTTGAAACAACACTGTACTTTGTGCTTCCTAGTTCCTTGCGAATCACTTGAGGAATAAAAGCTCTTTTCAAACAAATTAATCACCGTTTTGTCGGGTCGTGACTAGTTTCTTCTGTTCGGTTTTTTTTCTTCCTCCTGCTCGGGGAGTAATGATTGCGATCAGATGTTCAAATGGCACAAAAAGCACACGTCAGTCCGAGACGTATTATTTCGAGTGTGTCTGGGACGCGCGCGGAAAGAAGTGCATGAATCATAGGCCGTGTCCGGAAGGTAGAAAACTATCATTTGTTACGTTTGGAATAGTTTATTACACAGAAAATGAAGGGGGAATTGGTAATAAATGGGAACGGGAACCTGTACTACATATGGGTTGTAGATCTAAATACATTTCATAATGCAGGGTATGTTGTTGTGGTTTTTTTTGTCATTTTTGGTTTTTAAGAAGAGG</canonical>
            <polymorphic>CAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTGTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAACAAAATGCGCATTTTTCTAAGGGGACGTGATTGTTAGGAATGTTTCAAAGATCAGAGCAAATCAGGGGATCGGATTCATTTTTTGTCTTYAGTTTGGTTTTAAAACCACGTCATTATAAAAGTGAAATAATACCAGTTTCTTCTTGAAACAACACTGTACTTTGTGCTTCCTAGTTCCTTGCGAATCACTTGAGGAATAAAAGCTCTTTTCAAACAAATTAATCACCGTTTTGTCGGGTCGTGACTAGTTTCTTCTGTTCGGTTTTTTTTCTTCCTCCTGCTCGGGGAGTAATGATTGCGATCAGATGTTCAAATGGCACAAAAAGCACACGTCAGTCCGAGACGTATTATTTCGAGTGTGTCTGGGACGCGCGCGGAAAGAAGTGCATGAATCATAGGCCGTGTCCGGAAGGTAGAAAACTATCATTTGTTACGTTTGGAATAGTTTATTACACAGAAAATGAAGGGGGAATTGGTAATAAATGGGAACGGGAACCTGTACTACATATGGGTTGTAGATCTAAATACATTTCATAATGCAGGGTATGTTGTTGTGGTTTTTTTTGTCATTTTTGGTTTTTAAGAAGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATCCTATCACTGTTTGTGTTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAGAGCTTTTATTCCTCAAGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAACAAAATGCGCATTTTTCTAAGGGGACGTGATTGTTAGGAATGTTTCAAAGATCAGAGCAAATCAGGGGATCGGATTCATTTTTTGTCTTCAGTTTGGTTTTAAAACCACGTCATTATAAAAGTGAAATAATACCAGTTTCTTCTTGAAACAACACTGTACTTTGTGCTTCCTAGTTCCTTGCGAATCACTTGAGGAATAAAAGCTCTTTT</canonical_amplicon>
		<polymorphic_amplicon>ACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAACAAAATGCGCATTTTTCTAAGGGGACGTGATTGTTAGGAATGTTTCAAAGATCAGAGCAAATCAGGGGATCGGATTCATTTTTTGTCTTYAGTTTGGTTTTAAAACCACGTCATTATAAAAGTGAAATAATACCAGTTTCTTCTTGAAACAACACTGTACTTTGTGCTTCCTAGTTCCTTGCGAATCACTTGAGGAATAAAAGCTCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21503</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>696593</contig_pos>
        <strand>+</strand>
        <context>ATTTGTTTCA[C/T]GACAATACTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCA</left_flank>
        <right_flank>GACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTGTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAACAAAATGCGCATTTTTCTAAGGGGACGTGATTGTTAGGAATGTTTCAAAGATCAGAGCAAATCAGGGGATCGGATTCATTTTTTGTCTTCAGTTTGGTTTTAAAACCACGTCATTATAAAAGTGAAATAATACCAGTTTCTTCTTGAAACAACACTGTACTTTGTGCTTCCTAGTTCCTTGCGA</canonical>
            <polymorphic>AGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCAYGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTGTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAACAAAATGCGCATTTTTCTAAGGGGACGTGATTGTTAGGAATGTTTCAAAGATCAGAGCAAATCAGGGGATCGGATTCATTTTTTGTCTTCAGTTTGGTTTTAAAACCACGTCATTATAAAAGTGAAATAATACCAGTTTCTTCTTGAAACAACACTGTACTTTGTGCTTCCTAGTTCCTTGCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 317 100 81</canonical_bands>
                <polymorphic_bands>583 317 100</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATTGCTCTACAGTAAATTATCC</pcr_primer_p1>
		<pcr_primer_p2>TGTTTTCTCAAGTGTTTTCAGAT</pcr_primer_p2>
		<pcr_amplicon_size>326</pcr_amplicon_size>
		<canonical_amplicon>TGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACA</canonical_amplicon>
		<polymorphic_amplicon>TGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCAYGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21504</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>696940</contig_pos>
        <strand>+</strand>
        <context>GGGGACGTGA[C/T]TGTTAGGAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTTCAAAAACATTGTCAAACAAAATGCGCATTTTTCTAAGGGGACGTGA</left_flank>
        <right_flank>TGTTAGGAATGTTTCAAAGATCAGAGCAAATCAGGGGATCGGATTCATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTGTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAACAAAATGCGCATTTTTCTAAGGGGACGTGATTGTTAGGAATGTTTCAAAGATCAGAGCAAATCAGGGGATCGGATTCATTTTTTGTCTTCAGTTTGGTTTTAAAACCACGTCATTATAAAAGTGAAATAATACCAGTTTCTTCTTGAAACAACACTGTACTTTGTGCTTCCTAGTTCCTTGCGAATCACTTGAGGAATAAAAGCTCTTTTCAAACAAATTAATCACCGTTTTGTCGGGTCGTGACTAGTTTCTTCTGTTCGGTTTTTTTTCTTCCTCCTGCTCGGGGAGTAATGATTGCGATCAGATGTTCAAATGGCACAAAAAGCACACGTCAGTCCGAGACGTATTATTTCGAGTGTGTCTGGGACGCGCGCGGAAAGAAGTGCATGAATCATAGGCCGTGTCCGGAAGGTAGAAAACTATCATTTGTTACGTTTGGAATAGTTTATTACACAGAAAATGAAGGGGGAATTGGTAATAAATGGGAACGGGAACCTGTACTACATATGGGTTGTAGATCTAAATACATT</canonical>
            <polymorphic>GGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTGTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAACAAAATGCGCATTTTTCTAAGGGGACGTGAYTGTTAGGAATGTTTCAAAGATCAGAGCAAATCAGGGGATCGGATTCATTTTTTGTCTTCAGTTTGGTTTTAAAACCACGTCATTATAAAAGTGAAATAATACCAGTTTCTTCTTGAAACAACACTGTACTTTGTGCTTCCTAGTTCCTTGCGAATCACTTGAGGAATAAAAGCTCTTTTCAAACAAATTAATCACCGTTTTGTCGGGTCGTGACTAGTTTCTTCTGTTCGGTTTTTTTTCTTCCTCCTGCTCGGGGAGTAATGATTGCGATCAGATGTTCAAATGGCACAAAAAGCACACGTCAGTCCGAGACGTATTATTTCGAGTGTGTCTGGGACGCGCGCGGAAAGAAGTGCATGAATCATAGGCCGTGTCCGGAAGGTAGAAAACTATCATTTGTTACGTTTGGAATAGTTTATTACACAGAAAATGAAGGGGGAATTGGTAATAAATGGGAACGGGAACCTGTACTACATATGGGTTGTAGATCTAAATACATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATCCTATCACTGTTTGTGTTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAGAGCTTTTATTCCTCAAGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAACAAAATGCGCATTTTTCTAAGGGGACGTGATTGTTAGGAATGTTTCAAAGATCAGAGCAAATCAGGGGATCGGATTCATTTTTTGTCTTCAGTTTGGTTTTAAAACCACGTCATTATAAAAGTGAAATAATACCAGTTTCTTCTTGAAACAACACTGTACTTTGTGCTTCCTAGTTCCTTGCGAATCACTTGAGGAATAAAAGCTCTTTT</canonical_amplicon>
		<polymorphic_amplicon>ACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAACAAAATGCGCATTTTTCTAAGGGGACGTGAYTGTTAGGAATGTTTCAAAGATCAGAGCAAATCAGGGGATCGGATTCATTTTTTGTCTTCAGTTTGGTTTTAAAACCACGTCATTATAAAAGTGAAATAATACCAGTTTCTTCTTGAAACAACACTGTACTTTGTGCTTCCTAGTTCCTTGCGAATCACTTGAGGAATAAAAGCTCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21505</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>696860</contig_pos>
        <strand>+</strand>
        <context>ACCGCTCATT[G/T]TTGTCCCGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATT</left_flank>
        <right_flank>TTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTGTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAACAAAATGCGCATTTTTCTAAGGGGACGTGATTGTTAGGAATGTTTCAAAGATCAGAGCAAATCAGGGGATCGGATTCATTTTTTGTCTTCAGTTTGGTTTTAAAACCACGTCATTATAAAAGTGAAATAATACCAGTTTCTTCTTGAAACAACACTGTACTTTGTGCTTCCTAGTTCCTTGCGAATCACTTGAGGAATAAAAGCTCTTTTCAAACAAATTAATCACCGTTTTGTCGGGTCGTGACTAGTTTCTTCTGTTCGGTTTTTTTTCTTCCTCCTGCTCGGGGAGTAATGATTGCGATCAGATGTTCAAATGGCACAAAAAGCACACGTCAGTCCGAGACGTATTATTTCGAGTGTGTCTGGGACGCGCGCGGAAAGAAGTGCATGAATCATAGGCCGTGTCCGGAAGGTAGAAAACTATCATTTGTTACGTTTGGAATAGTTTATT</canonical>
            <polymorphic>TAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTKTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAACAAAATGCGCATTTTTCTAAGGGGACGTGATTGTTAGGAATGTTTCAAAGATCAGAGCAAATCAGGGGATCGGATTCATTTTTTGTCTTCAGTTTGGTTTTAAAACCACGTCATTATAAAAGTGAAATAATACCAGTTTCTTCTTGAAACAACACTGTACTTTGTGCTTCCTAGTTCCTTGCGAATCACTTGAGGAATAAAAGCTCTTTTCAAACAAATTAATCACCGTTTTGTCGGGTCGTGACTAGTTTCTTCTGTTCGGTTTTTTTTCTTCCTCCTGCTCGGGGAGTAATGATTGCGATCAGATGTTCAAATGGCACAAAAAGCACACGTCAGTCCGAGACGTATTATTTCGAGTGTGTCTGGGACGCGCGCGGAAAGAAGTGCATGAATCATAGGCCGTGTCCGGAAGGTAGAAAACTATCATTTGTTACGTTTGGAATAGTTTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGAAAAAGCTGATCGTAAA</pcr_primer_p1>
		<pcr_primer_p2>CTCTGATCTTTGAAACATTCCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTGTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAACAAAATGCGCATTTTTCTAAGGGGACGTGATTGTTAGGAATGTTTCAAAGATCAGAG</canonical_amplicon>
		<polymorphic_amplicon>TCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTKTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAACAAAATGCGCATTTTTCTAAGGGGACGTGATTGTTAGGAATGTTTCAAAGATCAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21506</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>696803</contig_pos>
        <strand>+</strand>
        <context>ACAACAAAAA[A/G]CCGAGGAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAA</left_flank>
        <right_flank>CCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTGTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAACAAAATGCGCATTTTTCTAAGGGGACGTGATTGTTAGGAATGTTTCAAAGATCAGAGCAAATCAGGGGATCGGATTCATTTTTTGTCTTCAGTTTGGTTTTAAAACCACGTCATTATAAAAGTGAAATAATACCAGTTTCTTCTTGAAACAACACTGTACTTTGTGCTTCCTAGTTCCTTGCGAATCACTTGAGGAATAAAAGCTCTTTTCAAACAAATTAATCACCGTTTTGTCGGGTCGTGACTAGTTTCTTCTGTTCGGTTTTTTTTCTTCCTCCTGCTCGGGGAGTAATGATTGCGATCAGATGTTCAAATGGCACAAAAAGCACACGTCAGTCCGAGACGTATTATTTCGAGTGTGTCTGGGACGCGCGCGGAAAGAAGTGCATGAATC</canonical>
            <polymorphic>TTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAARCCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTGTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAACAAAATGCGCATTTTTCTAAGGGGACGTGATTGTTAGGAATGTTTCAAAGATCAGAGCAAATCAGGGGATCGGATTCATTTTTTGTCTTCAGTTTGGTTTTAAAACCACGTCATTATAAAAGTGAAATAATACCAGTTTCTTCTTGAAACAACACTGTACTTTGTGCTTCCTAGTTCCTTGCGAATCACTTGAGGAATAAAAGCTCTTTTCAAACAAATTAATCACCGTTTTGTCGGGTCGTGACTAGTTTCTTCTGTTCGGTTTTTTTTCTTCCTCCTGCTCGGGGAGTAATGATTGCGATCAGATGTTCAAATGGCACAAAAAGCACACGTCAGTCCGAGACGTATTATTTCGAGTGTGTCTGGGACGCGCGCGGAAAGAAGTGCATGAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTGAAAACACTTGAGAAAACA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAACACAAACAGTGATAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTGTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAARCCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTGTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21507</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>696738</contig_pos>
        <strand></strand>
        <context>TGATCGTAAA[T/G]KTTTTAAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAA</left_flank>
        <right_flank>TTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTGTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAACAAAATGCGCATTTTTCTAAGGGGACGTGATTGTTAGGAATGTTTCAAAGATCAGAGCAAATCAGGGGATCGGATTCATTTTTTGTCTTCAGTTTGGTTTTAAAACCACGTCATTATAAAAGTGAAATAATACCAGTTTCTTCTTGAAACAACACTGTACTTTGTGCTTCCTAGTTCCTTGCGAATCACTTGAGGAATAAAAGCTCTTTTCAAACAAATTAATCACCGTTTTGTCGGGTCGTGACTAGTTTCTTCTGTTCGGTTTTTTTTCTTCCTCCTGCTCGGGGAGTAATGATTGCGATCAGATGTTCAAATGGCACAAAAAGCAC</canonical>
            <polymorphic>AAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAAKTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTGTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAACAAAATGCGCATTTTTCTAAGGGGACGTGATTGTTAGGAATGTTTCAAAGATCAGAGCAAATCAGGGGATCGGATTCATTTTTTGTCTTCAGTTTGGTTTTAAAACCACGTCATTATAAAAGTGAAATAATACCAGTTTCTTCTTGAAACAACACTGTACTTTGTGCTTCCTAGTTCCTTGCGAATCACTTGAGGAATAAAAGCTCTTTTCAAACAAATTAATCACCGTTTTGTCGGGTCGTGACTAGTTTCTTCTGTTCGGTTTTTTTTCTTCCTCCTGCTCGGGGAGTAATGATTGCGATCAGATGTTCAAATGGCACAAAAAGCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>429 277 88 74 55 51 26</canonical_bands>
                <polymorphic_bands>429 277 129 88 51 26</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>316 113 82 74 74 55 51 49 36 36 36 31 26 21</canonical_bands>
                <polymorphic_bands>316 129 113 82 74 51 49 36 36 36 31 26 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTGAAAACACTTGAGAAAACA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAACACAAACAGTGATAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTGTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAAKTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTGTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21510</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>698192</contig_pos>
        <strand>+</strand>
        <context>CCATGGAGAR[A/G]GACTGAAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCTCGACAAGTGCAGCTGCTTCGTCTTCCAAGAGAACGTCCATGGAGAA</left_flank>
        <right_flank>GACTGAAATTATTTCAGATTTTTGGGACCTTGAGAAATCAGGTATTTTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATGAGTCTCTTTAGCGATTCTTCTGAGTCCTGGGCTAGTAGTAGACGACATGGTAGATGATGGTGATGATGCTCCACGTCCTGAATCACGCCCATCCAATGAGTACGACGAGGTGGGCTCTGGACTTTTAGCTCTGACAGAAACGATGCAATCATCCAAATGGGATTGGAGCATCTCGCAAACTCGCAACGAGTCGCTCAGCATTGTGTCGTAAACCTGAAGCGAAGGTTTTTGAAATTTCAAAAATACGAAATGTGATAAACCCTTTTTTTGAGTTTACTAAGTCTTTTTTGAAGTTTTTTCGAATCGCTGAAATGTTTTTCTGAAAATTTTACCTCTTTCTCAAAAATGCAGTTCTTCATTGAGTTGTCCTCTTTTTTGACGACTCTCGCATGCTTCGGAATGCTTCTGGCAACTGTTGGTTTCTCATCACCAAATGTCTCGAGAGCCTCGACAAGTGCAGCTGCTTCGTCTTCCAAGAGAACGTCCATGGAGAAGGACTGAAATTATTTCAGATTTTTGGGACCTTGAGAAATCAGGTATTTTCAATGATTTAAAATTTAAAAAACGATTTTTTTTTCAAACGTCCCTCGGCTTTAAAGAGTAATGACTCAGTATAGTTAAACTGAAAGCGTCTGAAAATTCGGTAAGATTTTTTATTCAACTGTGATCTCAAAAATTGGGAGAATTGCCTACGAGTTAACATTCGAACTATTGTCAACACTTTAATAGGATTCCGCCCAAACCCCAAACCGTAACTTAAAGCTTATGTATCTCTTCCCCGTGTAAGATATAAGAAAGTGTGGTTCACTGACAAAATGTTTTGTTAATTGACCACTTTTCGATATCTTTCACAGAAAGCGACATAAATTGGCTCGAAGTAAAAAGTTTTAGGATCGTTCTATTGGAATGTTTACAGTATCCGATTTTTTATCTCAATTTTTTATGAGTCCCATTTTTTGCACATTTTGCTGTTAATTTAATCGTTTTCACTCTCA</canonical>
            <polymorphic>ATATGAGTCTCTTTAGCGATTCTTCTGAGTCCTGGGCTAGTAGTAGACGACATGGTAGATGATGGTGATGATGCTCCACGTCCTGAATCACGCCCATCCAATGAGTACGACGAGGTGGGCTCTGGACTTTTAGCTCTGACAGAAACGATGCAATCATCCAAATGGGATTGGAGCATCTCGCAAACTCGCAACGAGTCGCTCAGCATTGTGTCGTAAACCTGAAGCGAAGGTTTTTGAAATTTCAAAAATACGAAATGTGATAAACCCTTTTTTTGAGTTTACTAAGTCTTTTTTGAAGTTTTTTCGAATCGCTGAAATGTTTTTCTGAAAATTTTACCTCTTTCTCAAAAATGCAGTTCTTCATTGAGTTGTCCTCTTTTTTGACGACTCTCGCATGCTTCGGAATGCTTCTGGCAACTGTTGGTTTCTCATCACCAAATGTCTCGAGAGCCTCGACAAGTGCAGCTGCTTCGTCTTCCAAGAGAACGTCCATGGAGAARGACTGAAATTATTTCAGATTTTTGGGACCTTGAGAAATCAGGTATTTTCAATGATTTAAAATTTAAAAAACGATTTTTTTTTCAAACGTCCCTCGGCTTTAAAGAGTAATGACTCAGTATAGTTAAACTGAAAGCGTCTGAAAATTCGGTAAGATTTTTTATTCAACTGTGATCTCAAAAATTGGGAGAATTGCCTACGAGTTAACATTCGAACTATTGTCAACACTTTAATAGGATTCCGCCCAAACCCCAAACCGTAACTTAAAGCTTATGTATCTCTTCCCCGTGTAAGATATAAGAAAGTGTGGTTCACTGACAAAATGTTTTGTTAATTGACCACTTTTCGATATCTTTCACAGAAAGCGACATAAATTGGCTCGAAGTAAAAAGTTTTAGGATCGTTCTATTGGAATGTTTACAGTATCCGATTTTTTATCTCAATTTTTTATGAGTCCCATTTTTTGCACATTTTGCTGTTAATTTAATCGTTTTCACTCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACTGTTGGTTTCTCATCAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATCTTACCGAATTTTCAGAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAACTGTTGGTTTCTCATCACCAAATGTCTCGAGAGCCTCGACAAGTGCAGCTGCTTCGTCTTCCAAGAGAACGTCCATGGAGAAGGACTGAAATTATTTCAGATTTTTGGGACCTTGAGAAATCAGGTATTTTCAATGATTTAAAATTTAAAAAACGATTTTTTTTTCAAACGTCCCTCGGCTTTAAAGAGTAATGACTCAGTATAGTTAAACTGAAAGCGTCTGAAAATTCGGTAAGATTTT</canonical_amplicon>
		<polymorphic_amplicon>CAACTGTTGGTTTCTCATCACCAAATGTCTCGAGAGCCTCGACAAGTGCAGCTGCTTCGTCTTCCAAGAGAACGTCCATGGAGAARGACTGAAATTATTTCAGATTTTTGGGACCTTGAGAAATCAGGTATTTTCAATGATTTAAAATTTAAAAAACGATTTTTTTTTCAAACGTCCCTCGGCTTTAAAGAGTAATGACTCAGTATAGTTAAACTGAAAGCGTCTGAAAATTCGGTAAGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21511</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>698191</contig_pos>
        <strand>+</strand>
        <context>TCCATGGAGA[A/G]RGACTGAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCCTCGACAAGTGCAGCTGCTTCGTCTTCCAAGAGAACGTCCATGGAGA</left_flank>
        <right_flank>GGACTGAAATTATTTCAGATTTTTGGGACCTTGAGAAATCAGGTATTTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATATGAGTCTCTTTAGCGATTCTTCTGAGTCCTGGGCTAGTAGTAGACGACATGGTAGATGATGGTGATGATGCTCCACGTCCTGAATCACGCCCATCCAATGAGTACGACGAGGTGGGCTCTGGACTTTTAGCTCTGACAGAAACGATGCAATCATCCAAATGGGATTGGAGCATCTCGCAAACTCGCAACGAGTCGCTCAGCATTGTGTCGTAAACCTGAAGCGAAGGTTTTTGAAATTTCAAAAATACGAAATGTGATAAACCCTTTTTTTGAGTTTACTAAGTCTTTTTTGAAGTTTTTTCGAATCGCTGAAATGTTTTTCTGAAAATTTTACCTCTTTCTCAAAAATGCAGTTCTTCATTGAGTTGTCCTCTTTTTTGACGACTCTCGCATGCTTCGGAATGCTTCTGGCAACTGTTGGTTTCTCATCACCAAATGTCTCGAGAGCCTCGACAAGTGCAGCTGCTTCGTCTTCCAAGAGAACGTCCATGGAGAAGGACTGAAATTATTTCAGATTTTTGGGACCTTGAGAAATCAGGTATTTTCAATGATTTAAAATTTAAAAAACGATTTTTTTTTCAAACGTCCCTCGGCTTTAAAGAGTAATGACTCAGTATAGTTAAACTGAAAGCGTCTGAAAATTCGGTAAGATTTTTTATTCAACTGTGATCTCAAAAATTGGGAGAATTGCCTACGAGTTAACATTCGAACTATTGTCAACACTTTAATAGGATTCCGCCCAAACCCCAAACCGTAACTTAAAGCTTATGTATCTCTTCCCCGTGTAAGATATAAGAAAGTGTGGTTCACTGACAAAATGTTTTGTTAATTGACCACTTTTCGATATCTTTCACAGAAAGCGACATAAATTGGCTCGAAGTAAAAAGTTTTAGGATCGTTCTATTGGAATGTTTACAGTATCCGATTTTTTATCTCAATTTTTTATGAGTCCCATTTTTTGCACATTTTGCTGTTAATTTAATCGTTTTCACTCTC</canonical>
            <polymorphic>CATATGAGTCTCTTTAGCGATTCTTCTGAGTCCTGGGCTAGTAGTAGACGACATGGTAGATGATGGTGATGATGCTCCACGTCCTGAATCACGCCCATCCAATGAGTACGACGAGGTGGGCTCTGGACTTTTAGCTCTGACAGAAACGATGCAATCATCCAAATGGGATTGGAGCATCTCGCAAACTCGCAACGAGTCGCTCAGCATTGTGTCGTAAACCTGAAGCGAAGGTTTTTGAAATTTCAAAAATACGAAATGTGATAAACCCTTTTTTTGAGTTTACTAAGTCTTTTTTGAAGTTTTTTCGAATCGCTGAAATGTTTTTCTGAAAATTTTACCTCTTTCTCAAAAATGCAGTTCTTCATTGAGTTGTCCTCTTTTTTGACGACTCTCGCATGCTTCGGAATGCTTCTGGCAACTGTTGGTTTCTCATCACCAAATGTCTCGAGAGCCTCGACAAGTGCAGCTGCTTCGTCTTCCAAGAGAACGTCCATGGAGARGGACTGAAATTATTTCAGATTTTTGGGACCTTGAGAAATCAGGTATTTTCAATGATTTAAAATTTAAAAAACGATTTTTTTTTCAAACGTCCCTCGGCTTTAAAGAGTAATGACTCAGTATAGTTAAACTGAAAGCGTCTGAAAATTCGGTAAGATTTTTTATTCAACTGTGATCTCAAAAATTGGGAGAATTGCCTACGAGTTAACATTCGAACTATTGTCAACACTTTAATAGGATTCCGCCCAAACCCCAAACCGTAACTTAAAGCTTATGTATCTCTTCCCCGTGTAAGATATAAGAAAGTGTGGTTCACTGACAAAATGTTTTGTTAATTGACCACTTTTCGATATCTTTCACAGAAAGCGACATAAATTGGCTCGAAGTAAAAAGTTTTAGGATCGTTCTATTGGAATGTTTACAGTATCCGATTTTTTATCTCAATTTTTTATGAGTCCCATTTTTTGCACATTTTGCTGTTAATTTAATCGTTTTCACTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACTGTTGGTTTCTCATCAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATCTTACCGAATTTTCAGAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAACTGTTGGTTTCTCATCACCAAATGTCTCGAGAGCCTCGACAAGTGCAGCTGCTTCGTCTTCCAAGAGAACGTCCATGGAGAAGGACTGAAATTATTTCAGATTTTTGGGACCTTGAGAAATCAGGTATTTTCAATGATTTAAAATTTAAAAAACGATTTTTTTTTCAAACGTCCCTCGGCTTTAAAGAGTAATGACTCAGTATAGTTAAACTGAAAGCGTCTGAAAATTCGGTAAGATTTT</canonical_amplicon>
		<polymorphic_amplicon>CAACTGTTGGTTTCTCATCACCAAATGTCTCGAGAGCCTCGACAAGTGCAGCTGCTTCGTCTTCCAAGAGAACGTCCATGGAGARGGACTGAAATTATTTCAGATTTTTGGGACCTTGAGAAATCAGGTATTTTCAATGATTTAAAATTTAAAAAACGATTTTTTTTTCAAACGTCCCTCGGCTTTAAAGAGTAATGACTCAGTATAGTTAAACTGAAAGCGTCTGAAAATTCGGTAAGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21512</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>697976</contig_pos>
        <strand>+</strand>
        <context>TGAGTTYACT[A/T]AGTCTTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGAAATTTCAAAAATACGAAATGTGATAAACCCTTTTTTTGAGTTTACT</left_flank>
        <right_flank>AGTCTTTTTTGAAGTTTTTTCGAATCGCTGAAATGTTTTTCTGAAAATTT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTTTGGTTTTTAAGAAGAGGAGCTAAAGACAAAGTAAACTGCTACTAAATGTTTCAAAGCTGGGATTCTGAACCCGATTTAAGAGTATTGTTAGTTAAGAATGAGACGAAAGAAAAAAAACATAGCAGGAAGATTACAGCATTAGTTTTGGTTTTTTTTTTTGAAAAGTGGAATGCGATTTGAGTTGTCAATGCAAATTGTCATGTATTCTACATATGAGTCTCTTTAGCGATTCTTCTGAGTCCTGGGCTAGTAGTAGACGACATGGTAGATGATGGTGATGATGCTCCACGTCCTGAATCACGCCCATCCAATGAGTACGACGAGGTGGGCTCTGGACTTTTAGCTCTGACAGAAACGATGCAATCATCCAAATGGGATTGGAGCATCTCGCAAACTCGCAACGAGTCGCTCAGCATTGTGTCGTAAACCTGAAGCGAAGGTTTTTGAAATTTCAAAAATACGAAATGTGATAAACCCTTTTTTTGAGTTTACTAAGTCTTTTTTGAAGTTTTTTCGAATCGCTGAAATGTTTTTCTGAAAATTTTACCTCTTTCTCAAAAATGCAGTTCTTCATTGAGTTGTCCTCTTTTTTGACGACTCTCGCATGCTTCGGAATGCTTCTGGCAACTGTTGGTTTCTCATCACCAAATGTCTCGAGAGCCTCGACAAGTGCAGCTGCTTCGTCTTCCAAGAGAACGTCCATGGAGAAGGACTGAAATTATTTCAGATTTTTGGGACCTTGAGAAATCAGGTATTTTCAATGATTTAAAATTTAAAAAACGATTTTTTTTTCAAACGTCCCTCGGCTTTAAAGAGTAATGACTCAGTATAGTTAAACTGAAAGCGTCTGAAAATTCGGTAAGATTTTTTATTCAACTGTGATCTCAAAAATTGGGAGAATTGCCTACGAGTTAACATTCGAACTATTGTCAACACTTTAATAGGATTCCGCCCAAACCCCAAACCGTAACTTAAAGCTTATGTATCTCTTCCC</canonical>
            <polymorphic>CATTTTTGGTTTTTAAGAAGAGGAGCTAAAGACAAAGTAAACTGCTACTAAATGTTTCAAAGCTGGGATTCTGAACCCGATTTAAGAGTATTGTTAGTTAAGAATGAGACGAAAGAAAAAAAACATAGCAGGAAGATTACAGCATTAGTTTTGGTTTTTTTTTTTGAAAAGTGGAATGCGATTTGAGTTGTCAATGCAAATTGTCATGTATTCTACATATGAGTCTCTTTAGCGATTCTTCTGAGTCCTGGGCTAGTAGTAGACGACATGGTAGATGATGGTGATGATGCTCCACGTCCTGAATCACGCCCATCCAATGAGTACGACGAGGTGGGCTCTGGACTTTTAGCTCTGACAGAAACGATGCAATCATCCAAATGGGATTGGAGCATCTCGCAAACTCGCAACGAGTCGCTCAGCATTGTGTCGTAAACCTGAAGCGAAGGTTTTTGAAATTTCAAAAATACGAAATGTGATAAACCCTTTTTTTGAGTTTACTWAGTCTTTTTTGAAGTTTTTTCGAATCGCTGAAATGTTTTTCTGAAAATTTTACCTCTTTCTCAAAAATGCAGTTCTTCATTGAGTTGTCCTCTTTTTTGACGACTCTCGCATGCTTCGGAATGCTTCTGGCAACTGTTGGTTTCTCATCACCAAATGTCTCGAGAGCCTCGACAAGTGCAGCTGCTTCGTCTTCCAAGAGAACGTCCATGGAGAAGGACTGAAATTATTTCAGATTTTTGGGACCTTGAGAAATCAGGTATTTTCAATGATTTAAAATTTAAAAAACGATTTTTTTTTCAAACGTCCCTCGGCTTTAAAGAGTAATGACTCAGTATAGTTAAACTGAAAGCGTCTGAAAATTCGGTAAGATTTTTTATTCAACTGTGATCTCAAAAATTGGGAGAATTGCCTACGAGTTAACATTCGAACTATTGTCAACACTTTAATAGGATTCCGCCCAAACCCCAAACCGTAACTTAAAGCTTATGTATCTCTTCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTAGCTCTGACAGAAACGAT</pcr_primer_p1>
		<pcr_primer_p2>AGAGGACAACTCAATGAAGAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTAGCTCTGACAGAAACGATGCAATCATCCAAATGGGATTGGAGCATCTCGCAAACTCGCAACGAGTCGCTCAGCATTGTGTCGTAAACCTGAAGCGAAGGTTTTTGAAATTTCAAAAATACGAAATGTGATAAACCCTTTTTTTGAGTTTACTAAGTCTTTTTTGAAGTTTTTTCGAATCGCTGAAATGTTTTTCTGAAAATTTTACCTCTTTCTCAAAAATGCAGTTCTTCATTGAGTTGTCCTCT</canonical_amplicon>
		<polymorphic_amplicon>TTTTAGCTCTGACAGAAACGATGCAATCATCCAAATGGGATTGGAGCATCTCGCAAACTCGCAACGAGTCGCTCAGCATTGTGTCGTAAACCTGAAGCGAAGGTTTTTGAAATTTCAAAAATACGAAATGTGATAAACCCTTTTTTTGAGTTTACTWAGTCTTTTTTGAAGTTTTTTCGAATCGCTGAAATGTTTTTCTGAAAATTTTACCTCTTTCTCAAAAATGCAGTTCTTCATTGAGTTGTCCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21513</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>697972</contig_pos>
        <strand>+</strand>
        <context>TYTTTGAGTT[C/T]ACTWAGTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTTTGAAATTTCAAAAATACGAAATGTGATAAACCCTTTTTTTGAGTT</left_flank>
        <right_flank>ACTAAGTCTTTTTTGAAGTTTTTTCGAATCGCTGAAATGTTTTTCTGAAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTCATTTTTGGTTTTTAAGAAGAGGAGCTAAAGACAAAGTAAACTGCTACTAAATGTTTCAAAGCTGGGATTCTGAACCCGATTTAAGAGTATTGTTAGTTAAGAATGAGACGAAAGAAAAAAAACATAGCAGGAAGATTACAGCATTAGTTTTGGTTTTTTTTTTTGAAAAGTGGAATGCGATTTGAGTTGTCAATGCAAATTGTCATGTATTCTACATATGAGTCTCTTTAGCGATTCTTCTGAGTCCTGGGCTAGTAGTAGACGACATGGTAGATGATGGTGATGATGCTCCACGTCCTGAATCACGCCCATCCAATGAGTACGACGAGGTGGGCTCTGGACTTTTAGCTCTGACAGAAACGATGCAATCATCCAAATGGGATTGGAGCATCTCGCAAACTCGCAACGAGTCGCTCAGCATTGTGTCGTAAACCTGAAGCGAAGGTTTTTGAAATTTCAAAAATACGAAATGTGATAAACCCTTTTTTTGAGTTTACTAAGTCTTTTTTGAAGTTTTTTCGAATCGCTGAAATGTTTTTCTGAAAATTTTACCTCTTTCTCAAAAATGCAGTTCTTCATTGAGTTGTCCTCTTTTTTGACGACTCTCGCATGCTTCGGAATGCTTCTGGCAACTGTTGGTTTCTCATCACCAAATGTCTCGAGAGCCTCGACAAGTGCAGCTGCTTCGTCTTCCAAGAGAACGTCCATGGAGAAGGACTGAAATTATTTCAGATTTTTGGGACCTTGAGAAATCAGGTATTTTCAATGATTTAAAATTTAAAAAACGATTTTTTTTTCAAACGTCCCTCGGCTTTAAAGAGTAATGACTCAGTATAGTTAAACTGAAAGCGTCTGAAAATTCGGTAAGATTTTTTATTCAACTGTGATCTCAAAAATTGGGAGAATTGCCTACGAGTTAACATTCGAACTATTGTCAACACTTTAATAGGATTCCGCCCAAACCCCAAACCGTAACTTAAAGCTTATGTATCTCT</canonical>
            <polymorphic>TTGTCATTTTTGGTTTTTAAGAAGAGGAGCTAAAGACAAAGTAAACTGCTACTAAATGTTTCAAAGCTGGGATTCTGAACCCGATTTAAGAGTATTGTTAGTTAAGAATGAGACGAAAGAAAAAAAACATAGCAGGAAGATTACAGCATTAGTTTTGGTTTTTTTTTTTGAAAAGTGGAATGCGATTTGAGTTGTCAATGCAAATTGTCATGTATTCTACATATGAGTCTCTTTAGCGATTCTTCTGAGTCCTGGGCTAGTAGTAGACGACATGGTAGATGATGGTGATGATGCTCCACGTCCTGAATCACGCCCATCCAATGAGTACGACGAGGTGGGCTCTGGACTTTTAGCTCTGACAGAAACGATGCAATCATCCAAATGGGATTGGAGCATCTCGCAAACTCGCAACGAGTCGCTCAGCATTGTGTCGTAAACCTGAAGCGAAGGTTTTTGAAATTTCAAAAATACGAAATGTGATAAACCCTTTTTTTGAGTTYACTAAGTCTTTTTTGAAGTTTTTTCGAATCGCTGAAATGTTTTTCTGAAAATTTTACCTCTTTCTCAAAAATGCAGTTCTTCATTGAGTTGTCCTCTTTTTTGACGACTCTCGCATGCTTCGGAATGCTTCTGGCAACTGTTGGTTTCTCATCACCAAATGTCTCGAGAGCCTCGACAAGTGCAGCTGCTTCGTCTTCCAAGAGAACGTCCATGGAGAAGGACTGAAATTATTTCAGATTTTTGGGACCTTGAGAAATCAGGTATTTTCAATGATTTAAAATTTAAAAAACGATTTTTTTTTCAAACGTCCCTCGGCTTTAAAGAGTAATGACTCAGTATAGTTAAACTGAAAGCGTCTGAAAATTCGGTAAGATTTTTTATTCAACTGTGATCTCAAAAATTGGGAGAATTGCCTACGAGTTAACATTCGAACTATTGTCAACACTTTAATAGGATTCCGCCCAAACCCCAAACCGTAACTTAAAGCTTATGTATCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTAGCTCTGACAGAAACGAT</pcr_primer_p1>
		<pcr_primer_p2>AGAGGACAACTCAATGAAGAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTAGCTCTGACAGAAACGATGCAATCATCCAAATGGGATTGGAGCATCTCGCAAACTCGCAACGAGTCGCTCAGCATTGTGTCGTAAACCTGAAGCGAAGGTTTTTGAAATTTCAAAAATACGAAATGTGATAAACCCTTTTTTTGAGTTTACTAAGTCTTTTTTGAAGTTTTTTCGAATCGCTGAAATGTTTTTCTGAAAATTTTACCTCTTTCTCAAAAATGCAGTTCTTCATTGAGTTGTCCTCT</canonical_amplicon>
		<polymorphic_amplicon>TTTTAGCTCTGACAGAAACGATGCAATCATCCAAATGGGATTGGAGCATCTCGCAAACTCGCAACGAGTCGCTCAGCATTGTGTCGTAAACCTGAAGCGAAGGTTTTTGAAATTTCAAAAATACGAAATGTGATAAACCCTTTTTTTGAGTTYACTAAGTCTTTTTTGAAGTTTTTTCGAATCGCTGAAATGTTTTTCTGAAAATTTTACCTCTTTCTCAAAAATGCAGTTCTTCATTGAGTTGTCCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21514</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>697963</contig_pos>
        <strand>+</strand>
        <context>WAAACCCTTT[C/T]TTTGAGTTYA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAGCGAAGGTTTTTGAAATTTCAAAAATACGAAATGTGATAAACCCTTT</left_flank>
        <right_flank>TTTGAGTTTACTAAGTCTTTTTTGAAGTTTTTTCGAATCGCTGAAATGTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTTTTTTTTGTCATTTTTGGTTTTTAAGAAGAGGAGCTAAAGACAAAGTAAACTGCTACTAAATGTTTCAAAGCTGGGATTCTGAACCCGATTTAAGAGTATTGTTAGTTAAGAATGAGACGAAAGAAAAAAAACATAGCAGGAAGATTACAGCATTAGTTTTGGTTTTTTTTTTTGAAAAGTGGAATGCGATTTGAGTTGTCAATGCAAATTGTCATGTATTCTACATATGAGTCTCTTTAGCGATTCTTCTGAGTCCTGGGCTAGTAGTAGACGACATGGTAGATGATGGTGATGATGCTCCACGTCCTGAATCACGCCCATCCAATGAGTACGACGAGGTGGGCTCTGGACTTTTAGCTCTGACAGAAACGATGCAATCATCCAAATGGGATTGGAGCATCTCGCAAACTCGCAACGAGTCGCTCAGCATTGTGTCGTAAACCTGAAGCGAAGGTTTTTGAAATTTCAAAAATACGAAATGTGATAAACCCTTTTTTTGAGTTTACTAAGTCTTTTTTGAAGTTTTTTCGAATCGCTGAAATGTTTTTCTGAAAATTTTACCTCTTTCTCAAAAATGCAGTTCTTCATTGAGTTGTCCTCTTTTTTGACGACTCTCGCATGCTTCGGAATGCTTCTGGCAACTGTTGGTTTCTCATCACCAAATGTCTCGAGAGCCTCGACAAGTGCAGCTGCTTCGTCTTCCAAGAGAACGTCCATGGAGAAGGACTGAAATTATTTCAGATTTTTGGGACCTTGAGAAATCAGGTATTTTCAATGATTTAAAATTTAAAAAACGATTTTTTTTTCAAACGTCCCTCGGCTTTAAAGAGTAATGACTCAGTATAGTTAAACTGAAAGCGTCTGAAAATTCGGTAAGATTTTTTATTCAACTGTGATCTCAAAAATTGGGAGAATTGCCTACGAGTTAACATTCGAACTATTGTCAACACTTTAATAGGATTCCGCCCAAACCCCAAACCGTAACTTAAAGCTTA</canonical>
            <polymorphic>TGGTTTTTTTTGTCATTTTTGGTTTTTAAGAAGAGGAGCTAAAGACAAAGTAAACTGCTACTAAATGTTTCAAAGCTGGGATTCTGAACCCGATTTAAGAGTATTGTTAGTTAAGAATGAGACGAAAGAAAAAAAACATAGCAGGAAGATTACAGCATTAGTTTTGGTTTTTTTTTTTGAAAAGTGGAATGCGATTTGAGTTGTCAATGCAAATTGTCATGTATTCTACATATGAGTCTCTTTAGCGATTCTTCTGAGTCCTGGGCTAGTAGTAGACGACATGGTAGATGATGGTGATGATGCTCCACGTCCTGAATCACGCCCATCCAATGAGTACGACGAGGTGGGCTCTGGACTTTTAGCTCTGACAGAAACGATGCAATCATCCAAATGGGATTGGAGCATCTCGCAAACTCGCAACGAGTCGCTCAGCATTGTGTCGTAAACCTGAAGCGAAGGTTTTTGAAATTTCAAAAATACGAAATGTGATAAACCCTTTYTTTGAGTTTACTAAGTCTTTTTTGAAGTTTTTTCGAATCGCTGAAATGTTTTTCTGAAAATTTTACCTCTTTCTCAAAAATGCAGTTCTTCATTGAGTTGTCCTCTTTTTTGACGACTCTCGCATGCTTCGGAATGCTTCTGGCAACTGTTGGTTTCTCATCACCAAATGTCTCGAGAGCCTCGACAAGTGCAGCTGCTTCGTCTTCCAAGAGAACGTCCATGGAGAAGGACTGAAATTATTTCAGATTTTTGGGACCTTGAGAAATCAGGTATTTTCAATGATTTAAAATTTAAAAAACGATTTTTTTTTCAAACGTCCCTCGGCTTTAAAGAGTAATGACTCAGTATAGTTAAACTGAAAGCGTCTGAAAATTCGGTAAGATTTTTTATTCAACTGTGATCTCAAAAATTGGGAGAATTGCCTACGAGTTAACATTCGAACTATTGTCAACACTTTAATAGGATTCCGCCCAAACCCCAAACCGTAACTTAAAGCTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTAGCTCTGACAGAAACGAT</pcr_primer_p1>
		<pcr_primer_p2>AGAGGACAACTCAATGAAGAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTAGCTCTGACAGAAACGATGCAATCATCCAAATGGGATTGGAGCATCTCGCAAACTCGCAACGAGTCGCTCAGCATTGTGTCGTAAACCTGAAGCGAAGGTTTTTGAAATTTCAAAAATACGAAATGTGATAAACCCTTTTTTTGAGTTTACTAAGTCTTTTTTGAAGTTTTTTCGAATCGCTGAAATGTTTTTCTGAAAATTTTACCTCTTTCTCAAAAATGCAGTTCTTCATTGAGTTGTCCTCT</canonical_amplicon>
		<polymorphic_amplicon>TTTTAGCTCTGACAGAAACGATGCAATCATCCAAATGGGATTGGAGCATCTCGCAAACTCGCAACGAGTCGCTCAGCATTGTGTCGTAAACCTGAAGCGAAGGTTTTTGAAATTTCAAAAATACGAAATGTGATAAACCCTTTYTTTGAGTTTACTAAGTCTTTTTTGAAGTTTTTTCGAATCGCTGAAATGTTTTTCTGAAAATTTTACCTCTTTCTCAAAAATGCAGTTCTTCATTGAGTTGTCCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21515</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>697953</contig_pos>
        <strand>+</strand>
        <context>CGAAATGTGA[A/T]AAACCCTTTY</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGTAAACCTGAAGCGAAGGTTTTTGAAATTTCAAAAATACGAAATGTGA</left_flank>
        <right_flank>AAACCCTTTTTTTGAGTTTACTAAGTCTTTTTTGAAGTTTTTTCGAATCG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGTTGTTGTGGTTTTTTTTGTCATTTTTGGTTTTTAAGAAGAGGAGCTAAAGACAAAGTAAACTGCTACTAAATGTTTCAAAGCTGGGATTCTGAACCCGATTTAAGAGTATTGTTAGTTAAGAATGAGACGAAAGAAAAAAAACATAGCAGGAAGATTACAGCATTAGTTTTGGTTTTTTTTTTTGAAAAGTGGAATGCGATTTGAGTTGTCAATGCAAATTGTCATGTATTCTACATATGAGTCTCTTTAGCGATTCTTCTGAGTCCTGGGCTAGTAGTAGACGACATGGTAGATGATGGTGATGATGCTCCACGTCCTGAATCACGCCCATCCAATGAGTACGACGAGGTGGGCTCTGGACTTTTAGCTCTGACAGAAACGATGCAATCATCCAAATGGGATTGGAGCATCTCGCAAACTCGCAACGAGTCGCTCAGCATTGTGTCGTAAACCTGAAGCGAAGGTTTTTGAAATTTCAAAAATACGAAATGTGATAAACCCTTTTTTTGAGTTTACTAAGTCTTTTTTGAAGTTTTTTCGAATCGCTGAAATGTTTTTCTGAAAATTTTACCTCTTTCTCAAAAATGCAGTTCTTCATTGAGTTGTCCTCTTTTTTGACGACTCTCGCATGCTTCGGAATGCTTCTGGCAACTGTTGGTTTCTCATCACCAAATGTCTCGAGAGCCTCGACAAGTGCAGCTGCTTCGTCTTCCAAGAGAACGTCCATGGAGAAGGACTGAAATTATTTCAGATTTTTGGGACCTTGAGAAATCAGGTATTTTCAATGATTTAAAATTTAAAAAACGATTTTTTTTTCAAACGTCCCTCGGCTTTAAAGAGTAATGACTCAGTATAGTTAAACTGAAAGCGTCTGAAAATTCGGTAAGATTTTTTATTCAACTGTGATCTCAAAAATTGGGAGAATTGCCTACGAGTTAACATTCGAACTATTGTCAACACTTTAATAGGATTCCGCCCAAACCCCAAACCGTAAC</canonical>
            <polymorphic>TATGTTGTTGTGGTTTTTTTTGTCATTTTTGGTTTTTAAGAAGAGGAGCTAAAGACAAAGTAAACTGCTACTAAATGTTTCAAAGCTGGGATTCTGAACCCGATTTAAGAGTATTGTTAGTTAAGAATGAGACGAAAGAAAAAAAACATAGCAGGAAGATTACAGCATTAGTTTTGGTTTTTTTTTTTGAAAAGTGGAATGCGATTTGAGTTGTCAATGCAAATTGTCATGTATTCTACATATGAGTCTCTTTAGCGATTCTTCTGAGTCCTGGGCTAGTAGTAGACGACATGGTAGATGATGGTGATGATGCTCCACGTCCTGAATCACGCCCATCCAATGAGTACGACGAGGTGGGCTCTGGACTTTTAGCTCTGACAGAAACGATGCAATCATCCAAATGGGATTGGAGCATCTCGCAAACTCGCAACGAGTCGCTCAGCATTGTGTCGTAAACCTGAAGCGAAGGTTTTTGAAATTTCAAAAATACGAAATGTGAWAAACCCTTTTTTTGAGTTTACTAAGTCTTTTTTGAAGTTTTTTCGAATCGCTGAAATGTTTTTCTGAAAATTTTACCTCTTTCTCAAAAATGCAGTTCTTCATTGAGTTGTCCTCTTTTTTGACGACTCTCGCATGCTTCGGAATGCTTCTGGCAACTGTTGGTTTCTCATCACCAAATGTCTCGAGAGCCTCGACAAGTGCAGCTGCTTCGTCTTCCAAGAGAACGTCCATGGAGAAGGACTGAAATTATTTCAGATTTTTGGGACCTTGAGAAATCAGGTATTTTCAATGATTTAAAATTTAAAAAACGATTTTTTTTTCAAACGTCCCTCGGCTTTAAAGAGTAATGACTCAGTATAGTTAAACTGAAAGCGTCTGAAAATTCGGTAAGATTTTTTATTCAACTGTGATCTCAAAAATTGGGAGAATTGCCTACGAGTTAACATTCGAACTATTGTCAACACTTTAATAGGATTCCGCCCAAACCCCAAACCGTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTAGCTCTGACAGAAACGAT</pcr_primer_p1>
		<pcr_primer_p2>AGAGGACAACTCAATGAAGAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTAGCTCTGACAGAAACGATGCAATCATCCAAATGGGATTGGAGCATCTCGCAAACTCGCAACGAGTCGCTCAGCATTGTGTCGTAAACCTGAAGCGAAGGTTTTTGAAATTTCAAAAATACGAAATGTGATAAACCCTTTTTTTGAGTTTACTAAGTCTTTTTTGAAGTTTTTTCGAATCGCTGAAATGTTTTTCTGAAAATTTTACCTCTTTCTCAAAAATGCAGTTCTTCATTGAGTTGTCCTCT</canonical_amplicon>
		<polymorphic_amplicon>TTTTAGCTCTGACAGAAACGATGCAATCATCCAAATGGGATTGGAGCATCTCGCAAACTCGCAACGAGTCGCTCAGCATTGTGTCGTAAACCTGAAGCGAAGGTTTTTGAAATTTCAAAAATACGAAATGTGAWAAACCCTTTTTTTGAGTTTACTAAGTCTTTTTTGAAGTTTTTTCGAATCGCTGAAATGTTTTTCTGAAAATTTTACCTCTTTCTCAAAAATGCAGTTCTTCATTGAGTTGTCCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21516</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>750573</contig_pos>
        <strand>+</strand>
        <context>TATAAGGAGT[A/T]TGCAAGTGCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCATTAAACATAGTTACATGTAAGGTCAATTATTCAAATGTATAAGGAGT</left_flank>
        <right_flank>TGCAAGTGCGCGCGGCTGGACAGGCGCCGGCGTAATTGGCAAGACGTTTG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTGATATCATGTTCAACAGTTCATCAGTTTACAACTTTTTCATATCTTCCATCGTAAACGAGATACACTGGCTCAAAGTTGAAAGGTAGGAAACCCTTTTATCACAAATTTCACGGAAACTAAAGAGGGTGAAAGAAGGGAAACAAGTTAGTCTATAGTGAAAAAATGAAGGAAATCAGACCAGAAGGTAATTTTAAAATATAGCGAAAAACACTCAACCTATAATTTAGAAGTATAGAGCAAAATACATAACTTGAGAAGGGAATAGAAGAAAATGGAGAGGAAAAGACTTATGGTGATATTGGCTTGGCCTAAATTTTTAAGGGAGATAACTAAATGAAAACAAGAAAAAAATTGGTGATAAGTTATAGAAAATAATTAGGACACTATTACAATTTAATTGAAAAAGAATACATGTTAGAGGTAAACAGAAAAGGCAAGACGACATCATTAAACATAGTTACATGTAAGGTCAATTATTCAAATGTATAAGGAGTATGCAAGTGCGCGCGGCTGGACAGGCGCCGGCGTAATTGGCAAGACGTTTGAATGTAGAGGGTGTTGGATAAAGGTGTGTGATGGTTTTCTAGAAGTTGTGAGGAAAGAGGACGACGGAGGAGTGGAGAATCTGGAATTATAAAAATTTAGAAGATTACTATTAGTCGACAATTAATGTTCAGACTAGTGAAATTATCTACCGCATTCCCTCTAATAATGCCCCACCGAACTTCGAGCTCAATTATCTCGATTTCTGTTAACGATATCAAATATTTGTCAACTGCAAAAACTTTGATGATACTGTGATAAATAATTTATTAGTTGCCAAAATTTTGAGATGTTACACAGGTATCGAGATAATTTTTCAAAGTTGTCGGTTTGGGTGGGCTTCAGGAGGAAAACCGGTAAATTTTTTTCTTAAATAATTTCTGTTCGAACAAAAAAGAGTTTTCTTCTATTCCAAAAAACCCGAATACCAAGACTGAAAACGTACTTCATTG</canonical>
            <polymorphic>TTGTGATATCATGTTCAACAGTTCATCAGTTTACAACTTTTTCATATCTTCCATCGTAAACGAGATACACTGGCTCAAAGTTGAAAGGTAGGAAACCCTTTTATCACAAATTTCACGGAAACTAAAGAGGGTGAAAGAAGGGAAACAAGTTAGTCTATAGTGAAAAAATGAAGGAAATCAGACCAGAAGGTAATTTTAAAATATAGCGAAAAACACTCAACCTATAATTTAGAAGTATAGAGCAAAATACATAACTTGAGAAGGGAATAGAAGAAAATGGAGAGGAAAAGACTTATGGTGATATTGGCTTGGCCTAAATTTTTAAGGGAGATAACTAAATGAAAACAAGAAAAAAATTGGTGATAAGTTATAGAAAATAATTAGGACACTATTACAATTTAATTGAAAAAGAATACATGTTAGAGGTAAACAGAAAAGGCAAGACGACATCATTAAACATAGTTACATGTAAGGTCAATTATTCAAATGTATAAGGAGTWTGCAAGTGCGCGCGGCTGGACAGGCGCCGGCGTAATTGGCAAGACGTTTGAATGTAGAGGGTGTTGGATAAAGGTGTGTGATGGTTTTCTAGAAGTTGTGAGGAAAGAGGACGACGGAGGAGTGGAGAATCTGGAATTATAAAAATTTAGAAGATTACTATTAGTCGACAATTAATGTTCAGACTAGTGAAATTATCTACCGCATTCCCTCTAATAATGCCCCACCGAACTTCGAGCTCAATTATCTCGATTTCTGTTAACGATATCAAATATTTGTCAACTGCAAAAACTTTGATGATACTGTGATAAATAATTTATTAGTTGCCAAAATTTTGAGATGTTACACAGGTATCGAGATAATTTTTCAAAGTTGTCGGTTTGGGTGGGCTTCAGGAGGAAAACCGGTAAATTTTTTTCTTAAATAATTTCTGTTCGAACAAAAAAGAGTTTTCTTCTATTCCAAAAAACCCGAATACCAAGACTGAAAACGTACTTCATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGGAGATAACTAAATGAAAACA</pcr_primer_p1>
		<pcr_primer_p2>TTTATCCAACACCCTCTACATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGGGAGATAACTAAATGAAAACAAGAAAAAAATTGGTGATAAGTTATAGAAAATAATTAGGACACTATTACAATTTAATTGAAAAAGAATACATGTTAGAGGTAAACAGAAAAGGCAAGACGACATCATTAAACATAGTTACATGTAAGGTCAATTATTCAAATGTATAAGGAGTATGCAAGTGCGCGCGGCTGGACAGGCGCCGGCGTAATTGGCAAGACGTTTGAATGTAGAGGGTGTTGGATAAA</canonical_amplicon>
		<polymorphic_amplicon>AAGGGAGATAACTAAATGAAAACAAGAAAAAAATTGGTGATAAGTTATAGAAAATAATTAGGACACTATTACAATTTAATTGAAAAAGAATACATGTTAGAGGTAAACAGAAAAGGCAAGACGACATCATTAAACATAGTTACATGTAAGGTCAATTATTCAAATGTATAAGGAGTWTGCAAGTGCGCGCGGCTGGACAGGCGCCGGCGTAATTGGCAAGACGTTTGAATGTAGAGGGTGTTGGATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21551</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>750836</contig_pos>
        <strand></strand>
        <context>tctgttaacg[A/G]tatcaaatat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATAATGCCCCACCGAACTTCGAGCTCAATTATCTCGATTTCTGTTAACG</left_flank>
        <right_flank>TATCAAATATTTGTCAACTGCAAAAACTTTGATGATACTGTGATAAATAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAATAGAAGAAAATGGAGAGGAAAAGACTTATGGTGATATTGGCTTGGCCTAAATTTTTAAGGGAGATAACTAAATGAAAACAAGAAAAAAATTGGTGATAAGTTATAGAAAATAATTAGGACACTATTACAATTTAATTGAAAAAGAATACATGTTAGAGGTAAACAGAAAAGGCAAGACGACATCATTAAACATAGTTACATGTAAGGTCAATTATTCAAATGTATAAGGAGTATGCAAGTGCGCGCGGCTGGACAGGCGCCGGCGTAATTGGCAAGACGTTTGAATGTAGAGGGTGTTGGATAAAGGTGTGTGATGGTTTTCTAGAAGTTGTGAGGAAAGAGGACGACGGAGGAGTGGAGAATCTGGAATTATAAAAATTTAGAAGATTACTATTAGTCGACAATTAATGTTCAGACTAGTGAAATTATCTACCGCATTCCCTCTAATAATGCCCCACCGAACTTCGAGCTCAATTATCTCGATTTCTGTTAACGATATCAAATATTTGTCAACTGCAAAAACTTTGATGATACTGTGATAAATAATTTATTAGTTGCCAAAATTTTGAGATGTTACACAGGTATCGAGATAATTTTTCAAAGTTGTCGGTTTGGGTGGGCTTCAGGAGGAAAACCGGTAAATTTTTTTCTTAAATAATTTCTGTTCGAACAAAAAAGAGTTTTCTTCTATTCCAAAAAACCCGAATACCAAGACTGAAAACGTACTTCATTGTTTCTATTTTTACGGTGTAAGGGATGGAGAAACTAAAAATTAGTGGTGAAAGAGATTAGTGATTATGTATAGGATTCACGACAACGCGGAAAAATAGATCATATCATAACCAAAACAAGTGTTGCTGCAAACTATATTTTTTGCAGGATTCCAATGAAAAATGGTTGTGAAGGATAGAGGAGAAAGACCTGACGACTCGCGTTTGAGTGGGTTGAAAAAGCAAGAGGCTTGAGATCAAAGAAATGGAATTTGTTGAAGTGTTG</canonical>
            <polymorphic>GGAATAGAAGAAAATGGAGAGGAAAAGACTTATGGTGATATTGGCTTGGCCTAAATTTTTAAGGGAGATAACTAAATGAAAACAAGAAAAAAATTGGTGATAAGTTATAGAAAATAATTAGGACACTATTACAATTTAATTGAAAAAGAATACATGTTAGAGGTAAACAGAAAAGGCAAGACGACATCATTAAACATAGTTACATGTAAGGTCAATTATTCAAATGTATAAGGAGTATGCAAGTGCGCGCGGCTGGACAGGCGCCGGCGTAATTGGCAAGACGTTTGAATGTAGAGGGTGTTGGATAAAGGTGTGTGATGGTTTTCTAGAAGTTGTGAGGAAAGAGGACGACGGAGGAGTGGAGAATCTGGAATTATAAAAATTTAGAAGATTACTATTAGTCGACAATTAATGTTCAGACTAGTGAAATTATCTACCGCATTCCCTCTAATAATGCCCCACCGAACTTCGAGCTCAATTATCTCGATTTCTGTTAACGRTATCAAATATTTGTCAACTGCAAAAACTTTGATGATACTGTGATAAATAATTTATTAGTTGCCAAAATTTTGAGATGTTACACAGGTATCGAGATAATTTTTCAAAGTTGTCGGTTTGGGTGGGCTTCAGGAGGAAAACCGGTAAATTTTTTTCTTAAATAATTTCTGTTCGAACAAAAAAGAGTTTTCTTCTATTCCAAAAAACCCGAATACCAAGACTGAAAACGTACTTCATTGTTTCTATTTTTACGGTGTAAGGGATGGAGAAACTAAAAATTAGTGGTGAAAGAGATTAGTGATTATGTATAGGATTCACGACAACGCGGAAAAATAGATCATATCATAACCAAAACAAGTGTTGCTGCAAACTATATTTTTTGCAGGATTCCAATGAAAAATGGTTGTGAAGGATAGAGGAGAAAGACCTGACGACTCGCGTTTGAGTGGGTTGAAAAAGCAAGAGGCTTGAGATCAAAGAAATGGAATTTGTTGAAGTGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGTGAAATTATCTACCGCATTC</pcr_primer_p1>
		<pcr_primer_p2>TCGAACAGAAATTATTTAAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAGTGAAATTATCTACCGCATTCCCTCTAATAATGCCCCACCGAACTTCGAGCTCAATTATCTCGATTTCTGTTAACGATATCAAATATTTGTCAACTGCAAAAACTTTGATGATACTGTGATAAATAATTTATTAGTTGCCAAAATTTTGAGATGTTACACAGGTATCGAGATAATTTTTCAAAGTTGTCGGTTTGGGTGGGCTTCAGGAGGAAAACCGGTAAATTTTTTTCTTAAATAATTTCTGTTCGA</canonical_amplicon>
		<polymorphic_amplicon>TAGTGAAATTATCTACCGCATTCCCTCTAATAATGCCCCACCGAACTTCGAGCTCAATTATCTCGATTTCTGTTAACGRTATCAAATATTTGTCAACTGCAAAAACTTTGATGATACTGTGATAAATAATTTATTAGTTGCCAAAATTTTGAGATGTTACACAGGTATCGAGATAATTTTTCAAAGTTGTCGGTTTGGGTGGGCTTCAGGAGGAAAACCGGTAAATTTTTTTCTTAAATAATTTCTGTTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21578</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>750879</contig_pos>
        <strand></strand>
        <context>tgatactgtg[A/C]taaataattt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTAACGATATCAAATATTTGTCAACTGCAAAAACTTTGATGATACTGTG</left_flank>
        <right_flank>TAAATAATTTATTAGTTGCCAAAATTTTGAGATGTTACACAGGTATCGAG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTGGCCTAAATTTTTAAGGGAGATAACTAAATGAAAACAAGAAAAAAATTGGTGATAAGTTATAGAAAATAATTAGGACACTATTACAATTTAATTGAAAAAGAATACATGTTAGAGGTAAACAGAAAAGGCAAGACGACATCATTAAACATAGTTACATGTAAGGTCAATTATTCAAATGTATAAGGAGTATGCAAGTGCGCGCGGCTGGACAGGCGCCGGCGTAATTGGCAAGACGTTTGAATGTAGAGGGTGTTGGATAAAGGTGTGTGATGGTTTTCTAGAAGTTGTGAGGAAAGAGGACGACGGAGGAGTGGAGAATCTGGAATTATAAAAATTTAGAAGATTACTATTAGTCGACAATTAATGTTCAGACTAGTGAAATTATCTACCGCATTCCCTCTAATAATGCCCCACCGAACTTCGAGCTCAATTATCTCGATTTCTGTTAACGATATCAAATATTTGTCAACTGCAAAAACTTTGATGATACTGTGATAAATAATTTATTAGTTGCCAAAATTTTGAGATGTTACACAGGTATCGAGATAATTTTTCAAAGTTGTCGGTTTGGGTGGGCTTCAGGAGGAAAACCGGTAAATTTTTTTCTTAAATAATTTCTGTTCGAACAAAAAAGAGTTTTCTTCTATTCCAAAAAACCCGAATACCAAGACTGAAAACGTACTTCATTGTTTCTATTTTTACGGTGTAAGGGATGGAGAAACTAAAAATTAGTGGTGAAAGAGATTAGTGATTATGTATAGGATTCACGACAACGCGGAAAAATAGATCATATCATAACCAAAACAAGTGTTGCTGCAAACTATATTTTTTGCAGGATTCCAATGAAAAATGGTTGTGAAGGATAGAGGAGAAAGACCTGACGACTCGCGTTTGAGTGGGTTGAAAAAGCAAGAGGCTTGAGATCAAAGAAATGGAATTTGTTGAAGTGTTGGAATAAATTCAAAAAAATGATGACATAAGCGGACCAATAAGTA</canonical>
            <polymorphic>GCTTGGCCTAAATTTTTAAGGGAGATAACTAAATGAAAACAAGAAAAAAATTGGTGATAAGTTATAGAAAATAATTAGGACACTATTACAATTTAATTGAAAAAGAATACATGTTAGAGGTAAACAGAAAAGGCAAGACGACATCATTAAACATAGTTACATGTAAGGTCAATTATTCAAATGTATAAGGAGTATGCAAGTGCGCGCGGCTGGACAGGCGCCGGCGTAATTGGCAAGACGTTTGAATGTAGAGGGTGTTGGATAAAGGTGTGTGATGGTTTTCTAGAAGTTGTGAGGAAAGAGGACGACGGAGGAGTGGAGAATCTGGAATTATAAAAATTTAGAAGATTACTATTAGTCGACAATTAATGTTCAGACTAGTGAAATTATCTACCGCATTCCCTCTAATAATGCCCCACCGAACTTCGAGCTCAATTATCTCGATTTCTGTTAACGATATCAAATATTTGTCAACTGCAAAAACTTTGATGATACTGTGMTAAATAATTTATTAGTTGCCAAAATTTTGAGATGTTACACAGGTATCGAGATAATTTTTCAAAGTTGTCGGTTTGGGTGGGCTTCAGGAGGAAAACCGGTAAATTTTTTTCTTAAATAATTTCTGTTCGAACAAAAAAGAGTTTTCTTCTATTCCAAAAAACCCGAATACCAAGACTGAAAACGTACTTCATTGTTTCTATTTTTACGGTGTAAGGGATGGAGAAACTAAAAATTAGTGGTGAAAGAGATTAGTGATTATGTATAGGATTCACGACAACGCGGAAAAATAGATCATATCATAACCAAAACAAGTGTTGCTGCAAACTATATTTTTTGCAGGATTCCAATGAAAAATGGTTGTGAAGGATAGAGGAGAAAGACCTGACGACTCGCGTTTGAGTGGGTTGAAAAAGCAAGAGGCTTGAGATCAAAGAAATGGAATTTGTTGAAGTGTTGGAATAAATTCAAAAAAATGATGACATAAGCGGACCAATAAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTGAAATTATCTACCGCATTC</pcr_primer_p1>
		<pcr_primer_p2>TCGAACAGAAATTATTTAAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAGTGAAATTATCTACCGCATTCCCTCTAATAATGCCCCACCGAACTTCGAGCTCAATTATCTCGATTTCTGTTAACGATATCAAATATTTGTCAACTGCAAAAACTTTGATGATACTGTGATAAATAATTTATTAGTTGCCAAAATTTTGAGATGTTACACAGGTATCGAGATAATTTTTCAAAGTTGTCGGTTTGGGTGGGCTTCAGGAGGAAAACCGGTAAATTTTTTTCTTAAATAATTTCTGTTCGA</canonical_amplicon>
		<polymorphic_amplicon>TAGTGAAATTATCTACCGCATTCCCTCTAATAATGCCCCACCGAACTTCGAGCTCAATTATCTCGATTTCTGTTAACGATATCAAATATTTGTCAACTGCAAAAACTTTGATGATACTGTGMTAAATAATTTATTAGTTGCCAAAATTTTGAGATGTTACACAGGTATCGAGATAATTTTTCAAAGTTGTCGGTTTGGGTGGGCTTCAGGAGGAAAACCGGTAAATTTTTTTCTTAAATAATTTCTGTTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21579</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>750923</contig_pos>
        <strand></strand>
        <context>gttacacagg[T/A]atcgagataa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ACTGTGATAAATAATTTATTAGTTGCCAAAATTTTGAGATGTTACACAGG</left_flank>
        <right_flank>ATCGAGATAATTTTTCAAAGTTGTCGGTTTGGGTGGGCTTCAGGAGGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAATTGGTGATAAGTTATAGAAAATAATTAGGACACTATTACAATTTAATTGAAAAAGAATACATGTTAGAGGTAAACAGAAAAGGCAAGACGACATCATTAAACATAGTTACATGTAAGGTCAATTATTCAAATGTATAAGGAGTATGCAAGTGCGCGCGGCTGGACAGGCGCCGGCGTAATTGGCAAGACGTTTGAATGTAGAGGGTGTTGGATAAAGGTGTGTGATGGTTTTCTAGAAGTTGTGAGGAAAGAGGACGACGGAGGAGTGGAGAATCTGGAATTATAAAAATTTAGAAGATTACTATTAGTCGACAATTAATGTTCAGACTAGTGAAATTATCTACCGCATTCCCTCTAATAATGCCCCACCGAACTTCGAGCTCAATTATCTCGATTTCTGTTAACGATATCAAATATTTGTCAACTGCAAAAACTTTGATGATACTGTGATAAATAATTTATTAGTTGCCAAAATTTTGAGATGTTACACAGGTATCGAGATAATTTTTCAAAGTTGTCGGTTTGGGTGGGCTTCAGGAGGAAAACCGGTAAATTTTTTTCTTAAATAATTTCTGTTCGAACAAAAAAGAGTTTTCTTCTATTCCAAAAAACCCGAATACCAAGACTGAAAACGTACTTCATTGTTTCTATTTTTACGGTGTAAGGGATGGAGAAACTAAAAATTAGTGGTGAAAGAGATTAGTGATTATGTATAGGATTCACGACAACGCGGAAAAATAGATCATATCATAACCAAAACAAGTGTTGCTGCAAACTATATTTTTTGCAGGATTCCAATGAAAAATGGTTGTGAAGGATAGAGGAGAAAGACCTGACGACTCGCGTTTGAGTGGGTTGAAAAAGCAAGAGGCTTGAGATCAAAGAAATGGAATTTGTTGAAGTGTTGGAATAAATTCAAAAAAATGATGACATAAGCGGACCAATAAGTAACAGAGAAAGGTACAACTGACGAAATGAAGCAGTAATGATCAGT</canonical>
            <polymorphic>AAAAAATTGGTGATAAGTTATAGAAAATAATTAGGACACTATTACAATTTAATTGAAAAAGAATACATGTTAGAGGTAAACAGAAAAGGCAAGACGACATCATTAAACATAGTTACATGTAAGGTCAATTATTCAAATGTATAAGGAGTATGCAAGTGCGCGCGGCTGGACAGGCGCCGGCGTAATTGGCAAGACGTTTGAATGTAGAGGGTGTTGGATAAAGGTGTGTGATGGTTTTCTAGAAGTTGTGAGGAAAGAGGACGACGGAGGAGTGGAGAATCTGGAATTATAAAAATTTAGAAGATTACTATTAGTCGACAATTAATGTTCAGACTAGTGAAATTATCTACCGCATTCCCTCTAATAATGCCCCACCGAACTTCGAGCTCAATTATCTCGATTTCTGTTAACGATATCAAATATTTGTCAACTGCAAAAACTTTGATGATACTGTGATAAATAATTTATTAGTTGCCAAAATTTTGAGATGTTACACAGGWATCGAGATAATTTTTCAAAGTTGTCGGTTTGGGTGGGCTTCAGGAGGAAAACCGGTAAATTTTTTTCTTAAATAATTTCTGTTCGAACAAAAAAGAGTTTTCTTCTATTCCAAAAAACCCGAATACCAAGACTGAAAACGTACTTCATTGTTTCTATTTTTACGGTGTAAGGGATGGAGAAACTAAAAATTAGTGGTGAAAGAGATTAGTGATTATGTATAGGATTCACGACAACGCGGAAAAATAGATCATATCATAACCAAAACAAGTGTTGCTGCAAACTATATTTTTTGCAGGATTCCAATGAAAAATGGTTGTGAAGGATAGAGGAGAAAGACCTGACGACTCGCGTTTGAGTGGGTTGAAAAAGCAAGAGGCTTGAGATCAAAGAAATGGAATTTGTTGAAGTGTTGGAATAAATTCAAAAAAATGATGACATAAGCGGACCAATAAGTAACAGAGAAAGGTACAACTGACGAAATGAAGCAGTAATGATCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTGAAATTATCTACCGCATTC</pcr_primer_p1>
		<pcr_primer_p2>TCGAACAGAAATTATTTAAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAGTGAAATTATCTACCGCATTCCCTCTAATAATGCCCCACCGAACTTCGAGCTCAATTATCTCGATTTCTGTTAACGATATCAAATATTTGTCAACTGCAAAAACTTTGATGATACTGTGATAAATAATTTATTAGTTGCCAAAATTTTGAGATGTTACACAGGTATCGAGATAATTTTTCAAAGTTGTCGGTTTGGGTGGGCTTCAGGAGGAAAACCGGTAAATTTTTTTCTTAAATAATTTCTGTTCGA</canonical_amplicon>
		<polymorphic_amplicon>TAGTGAAATTATCTACCGCATTCCCTCTAATAATGCCCCACCGAACTTCGAGCTCAATTATCTCGATTTCTGTTAACGATATCAAATATTTGTCAACTGCAAAAACTTTGATGATACTGTGATAAATAATTTATTAGTTGCCAAAATTTTGAGATGTTACACAGGWATCGAGATAATTTTTCAAAGTTGTCGGTTTGGGTGGGCTTCAGGAGGAAAACCGGTAAATTTTTTTCTTAAATAATTTCTGTTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21580</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>754562</contig_pos>
        <strand></strand>
        <context>CTTTTGTGTG[A/G]ATAATATCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTAGTTGCATTCTGTTCTGCTTCGCAAAAAAAAATCAGGCTTTTGTGTG</left_flank>
        <right_flank>ATAATATCATCTTCATTTTTAAATCGAATGACGCAATTCTGAATAAATGC</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTCGAAAGTTTCTTGGCCGGCACAAATAATTGAATGGTTATTTACAAGAGGGGTCCCAACGTGGCCCGTGAAACTCGCTCTCTGAAAGTTTGAATATTCGAGATAGTGAGCAATAAATTCAAAATTTCTAACACAAATTATATATTAGATTGATCATAAAAAACTAATTTTCAGTTTTTTTTCTGCATTTCCAAATTTTCAGACGCACCCACCGAAGTCACTTATACCTGTTTCGAACCAAAGAACATCCGATTGATCGCAAAATTTGAAGATCAGCGTTTAAATCAATGAACAGAGGATTTACAATGTGCTTCGTGTTTTTCAATGTTATATTATATACATTTCTTCCTTGACCTATCAATTTTTTTCCGTCCCGCCTGTGTTCTGAAATTTGATTCCATTTTCTAAACTGTCCGCTTAAAGATCTATTTCTTTCTCTCTGATCTCAGTAGTTGCATTCTGTTCTGCTTCGCAAAAAAAAATCAGGCTTTTGTGTGAATAATATCATCTTCATTTTTAAATCGAATGACGCAATTCTGAATAAATGCTCATTGATTTTTTTTTCATAAAATAGATTCAGAAGAATAATCCCTCTTTAATAAAATTATACGTTCTTCTTTGGTCCAGCAGATAAAATGGGCGTGAATGTGTGGACATTCGAAAAGGCCTTGAGCGTGGAGAAACATTTTCGTCAATAATCCTGTGTGTTGAAGGCCCTCCAAATTGTTGATTTTTACTGAATTTTTCTTATTCTCGGTGATACTGTGATATAGGTTCATTCATCTATTGGAAACAAATTAAGTTTGACTGTGAATTTTTTTTTTCAATTTTAGAGACATGAGCAATAGCTATAAAAATTTTCAGAAAGTATGCAAATGCGTTCACGACAAGTAGATTAAAACAGCACTGTTGAAGTGGAATGGTTGGTTATTCAATAATTTTCTGTTAAGCTTACTTTAACTTATTCAGAGCAATCGATCGAGACGTGAACTTGCGAC</canonical>
            <polymorphic>TGTTCGAAAGTTTCTTGGCCGGCACAAATAATTGAATGGTTATTTACAAGAGGGGTCCCAACGTGGCCCGTGAAACTCGCTCTCTGAAAGTTTGAATATTCGAGATAGTGAGCAATAAATTCAAAATTTCTAACACAAATTATATATTAGATTGATCATAAAAAACTAATTTTCAGTTTTTTTTCTGCATTTCCAAATTTTCAGACGCACCCACCGAAGTCACTTATACCTGTTTCGAACCAAAGAACATCCGATTGATCGCAAAATTTGAAGATCAGCGTTTAAATCAATGAACAGAGGATTTACAATGTGCTTCGTGTTTTTCAATGTTATATTATATACATTTCTTCCTTGACCTATCAATTTTTTTCCGTCCCGCCTGTGTTCTGAAATTTGATTCCATTTTCTAAACTGTCCGCTTAAAGATCTATTTCTTTCTCTCTGATCTCAGTAGTTGCATTCTGTTCTGCTTCGCAAAAAAAAATCAGGCTTTTGTGTGRATAATATCATCTTCATTTTTAAATCGAATGACGCAATTCTGAATAAATGCTCATTGATTTTTTTTTCATAAAATAGATTCAGAAGAATAATCCCTCTTTAATAAAATTATACGTTCTTCTTTGGTCCAGCAGATAAAATGGGCGTGAATGTGTGGACATTCGAAAAGGCCTTGAGCGTGGAGAAACATTTTCGTCAATAATCCTGTGTGTTGAAGGCCCTCCAAATTGTTGATTTTTACTGAATTTTTCTTATTCTCGGTGATACTGTGATATAGGTTCATTCATCTATTGGAAACAAATTAAGTTTGACTGTGAATTTTTTTTTTCAATTTTAGAGACATGAGCAATAGCTATAAAAATTTTCAGAAAGTATGCAAATGCGTTCACGACAAGTAGATTAAAACAGCACTGTTGAAGTGGAATGGTTGGTTATTCAATAATTTTCTGTTAAGCTTACTTTAACTTATTCAGAGCAATCGATCGAGACGTGAACTTGCGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTCAGTAGTTGCATTCTGTTC</pcr_primer_p1>
		<pcr_primer_p2>TGACGAAAATGTTTCTCCAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATCTCAGTAGTTGCATTCTGTTCTGCTTCGCAAAAAAAAATCAGGCTTTTGTGTGAATAATATCATCTTCATTTTTAAATCGAATGACGCAATTCTGAATAAATGCTCATTGATTTTTTTTTCATAAAATAGATTCAGAAGAATAATCCCTCTTTAATAAAATTATACGTTCTTCTTTGGTCCAGCAGATAAAATGGGCGTGAATGTGTGGACATTCGAAAAGGCCTTGAGCGTGGAGAAACATTTTCGTCA</canonical_amplicon>
		<polymorphic_amplicon>ATCTCAGTAGTTGCATTCTGTTCTGCTTCGCAAAAAAAAATCAGGCTTTTGTGTGRATAATATCATCTTCATTTTTAAATCGAATGACGCAATTCTGAATAAATGCTCATTGATTTTTTTTTCATAAAATAGATTCAGAAGAATAATCCCTCTTTAATAAAATTATACGTTCTTCTTTGGTCCAGCAGATAAAATGGGCGTGAATGTGTGGACATTCGAAAAGGCCTTGAGCGTGGAGAAACATTTTCGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21581</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>754467</contig_pos>
        <strand></strand>
        <context>TGATTCCATT[T/C]TCTAAACTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACCTATCAATTTTTTTCCGTCCCGCCTGTGTTCTGAAATTTGATTCCATT</left_flank>
        <right_flank>TCTAAACTGTCCGCTTAAAGATCTATTTCTTTCTCTCTGATCTCAGTAGT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGAAAAGGTGAGTTCACGTCAATTTTATGGATTGAACTGCCGCCAACTGGCTTTTAAATTTTGCATTCCTGACCAACAAAGAGAGCTTGAATTGTTCGAAAGTTTCTTGGCCGGCACAAATAATTGAATGGTTATTTACAAGAGGGGTCCCAACGTGGCCCGTGAAACTCGCTCTCTGAAAGTTTGAATATTCGAGATAGTGAGCAATAAATTCAAAATTTCTAACACAAATTATATATTAGATTGATCATAAAAAACTAATTTTCAGTTTTTTTTCTGCATTTCCAAATTTTCAGACGCACCCACCGAAGTCACTTATACCTGTTTCGAACCAAAGAACATCCGATTGATCGCAAAATTTGAAGATCAGCGTTTAAATCAATGAACAGAGGATTTACAATGTGCTTCGTGTTTTTCAATGTTATATTATATACATTTCTTCCTTGACCTATCAATTTTTTTCCGTCCCGCCTGTGTTCTGAAATTTGATTCCATTTTCTAAACTGTCCGCTTAAAGATCTATTTCTTTCTCTCTGATCTCAGTAGTTGCATTCTGTTCTGCTTCGCAAAAAAAAATCAGGCTTTTGTGTGAATAATATCATCTTCATTTTTAAATCGAATGACGCAATTCTGAATAAATGCTCATTGATTTTTTTTTCATAAAATAGATTCAGAAGAATAATCCCTCTTTAATAAAATTATACGTTCTTCTTTGGTCCAGCAGATAAAATGGGCGTGAATGTGTGGACATTCGAAAAGGCCTTGAGCGTGGAGAAACATTTTCGTCAATAATCCTGTGTGTTGAAGGCCCTCCAAATTGTTGATTTTTACTGAATTTTTCTTATTCTCGGTGATACTGTGATATAGGTTCATTCATCTATTGGAAACAAATTAAGTTTGACTGTGAATTTTTTTTTTCAATTTTAGAGACATGAGCAATAGCTATAAAAATTTTCAGAAAGTATGCAAATGCGTTCACGACAAGTAGATTAAAACA</canonical>
            <polymorphic>AAAAGAAAAGGTGAGTTCACGTCAATTTTATGGATTGAACTGCCGCCAACTGGCTTTTAAATTTTGCATTCCTGACCAACAAAGAGAGCTTGAATTGTTCGAAAGTTTCTTGGCCGGCACAAATAATTGAATGGTTATTTACAAGAGGGGTCCCAACGTGGCCCGTGAAACTCGCTCTCTGAAAGTTTGAATATTCGAGATAGTGAGCAATAAATTCAAAATTTCTAACACAAATTATATATTAGATTGATCATAAAAAACTAATTTTCAGTTTTTTTTCTGCATTTCCAAATTTTCAGACGCACCCACCGAAGTCACTTATACCTGTTTCGAACCAAAGAACATCCGATTGATCGCAAAATTTGAAGATCAGCGTTTAAATCAATGAACAGAGGATTTACAATGTGCTTCGTGTTTTTCAATGTTATATTATATACATTTCTTCCTTGACCTATCAATTTTTTTCCGTCCCGCCTGTGTTCTGAAATTTGATTCCATTYTCTAAACTGTCCGCTTAAAGATCTATTTCTTTCTCTCTGATCTCAGTAGTTGCATTCTGTTCTGCTTCGCAAAAAAAAATCAGGCTTTTGTGTGAATAATATCATCTTCATTTTTAAATCGAATGACGCAATTCTGAATAAATGCTCATTGATTTTTTTTTCATAAAATAGATTCAGAAGAATAATCCCTCTTTAATAAAATTATACGTTCTTCTTTGGTCCAGCAGATAAAATGGGCGTGAATGTGTGGACATTCGAAAAGGCCTTGAGCGTGGAGAAACATTTTCGTCAATAATCCTGTGTGTTGAAGGCCCTCCAAATTGTTGATTTTTACTGAATTTTTCTTATTCTCGGTGATACTGTGATATAGGTTCATTCATCTATTGGAAACAAATTAAGTTTGACTGTGAATTTTTTTTTTCAATTTTAGAGACATGAGCAATAGCTATAAAAATTTTCAGAAAGTATGCAAATGCGTTCACGACAAGTAGATTAAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCAATGAACAGAGGATTTACA</pcr_primer_p1>
		<pcr_primer_p2>ATTCGATTTAAAAATGAAGATGA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATCAATGAACAGAGGATTTACAATGTGCTTCGTGTTTTTCAATGTTATATTATATACATTTCTTCCTTGACCTATCAATTTTTTTCCGTCCCGCCTGTGTTCTGAAATTTGATTCCATTTTCTAAACTGTCCGCTTAAAGATCTATTTCTTTCTCTCTGATCTCAGTAGTTGCATTCTGTTCTGCTTCGCAAAAAAAAATCAGGCTTTTGTGTGAATAATATCATCTTCATTTTTAAATCGAAT</canonical_amplicon>
		<polymorphic_amplicon>AATCAATGAACAGAGGATTTACAATGTGCTTCGTGTTTTTCAATGTTATATTATATACATTTCTTCCTTGACCTATCAATTTTTTTCCGTCCCGCCTGTGTTCTGAAATTTGATTCCATTYTCTAAACTGTCCGCTTAAAGATCTATTTCTTTCTCTCTGATCTCAGTAGTTGCATTCTGTTCTGCTTCGCAAAAAAAAATCAGGCTTTTGTGTGAATAATATCATCTTCATTTTTAAATCGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21582</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>754331</contig_pos>
        <strand>+</strand>
        <context>TCGYAAAATT[C/T]GAAGATCAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCACTTATACCTGTTTCGAACCAAAGAACATCCGATTGATCGCAAAATT</left_flank>
        <right_flank>GAAGATCAGCGTTTAAATCAATGAACAGAGGATTTACAATGTGCTTCGTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATGCCGTGATAAATAATAAAAATAAAACTATCAAAAATAAGAATCAAGATACTCCAACACCCAAAAACGTTTTCAGCTTGAACAATCTTCTTCCACCGCCGCTTATGTCATCAATGCCGCCGCCTAATCCACTCAAAAGAAAAGGTGAGTTCACGTCAATTTTATGGATTGAACTGCCGCCAACTGGCTTTTAAATTTTGCATTCCTGACCAACAAAGAGAGCTTGAATTGTTCGAAAGTTTCTTGGCCGGCACAAATAATTGAATGGTTATTTACAAGAGGGGTCCCAACGTGGCCCGTGAAACTCGCTCTCTGAAAGTTTGAATATTCGAGATAGTGAGCAATAAATTCAAAATTTCTAACACAAATTATATATTAGATTGATCATAAAAAACTAATTTTCAGTTTTTTTTCTGCATTTCCAAATTTTCAGACGCACCCACCGAAGTCACTTATACCTGTTTCGAACCAAAGAACATCCGATTGATCGCAAAATTTGAAGATCAGCGTTTAAATCAATGAACAGAGGATTTACAATGTGCTTCGTGTTTTTCAATGTTATATTATATACATTTCTTCCTTGACCTATCAATTTTTTTCCGTCCCGCCTGTGTTCTGAAATTTGATTCCATTTTCTAAACTGTCCGCTTAAAGATCTATTTCTTTCTCTCTGATCTCAGTAGTTGCATTCTGTTCTGCTTCGCAAAAAAAAATCAGGCTTTTGTGTGAATAATATCATCTTCATTTTTAAATCGAATGACGCAATTCTGAATAAATGCTCATTGATTTTTTTTTCATAAAATAGATTCAGAAGAATAATCCCTCTTTAATAAAATTATACGTTCTTCTTTGGTCCAGCAGATAAAATGGGCGTGAATGTGTGGACATTCGAAAAGGCCTTGAGCGTGGAGAAACATTTTCGTCAATAATCCTGTGTGTTGAAGGCCCTCCAAATTGTTGATTTTTACTGAATTTTTCTTATTCTCGGTGATACTGTG</canonical>
            <polymorphic>TGATGCCGTGATAAATAATAAAAATAAAACTATCAAAAATAAGAATCAAGATACTCCAACACCCAAAAACGTTTTCAGCTTGAACAATCTTCTTCCACCGCCGCTTATGTCATCAATGCCGCCGCCTAATCCACTCAAAAGAAAAGGTGAGTTCACGTCAATTTTATGGATTGAACTGCCGCCAACTGGCTTTTAAATTTTGCATTCCTGACCAACAAAGAGAGCTTGAATTGTTCGAAAGTTTCTTGGCCGGCACAAATAATTGAATGGTTATTTACAAGAGGGGTCCCAACGTGGCCCGTGAAACTCGCTCTCTGAAAGTTTGAATATTCGAGATAGTGAGCAATAAATTCAAAATTTCTAACACAAATTATATATTAGATTGATCATAAAAAACTAATTTTCAGTTTTTTTTCTGCATTTCCAAATTTTCAGACGCACCCACCGAAGTCACTTATACCTGTTTCGAACCAAAGAACATCCGATTGATCGCAAAATTYGAAGATCAGCGTTTAAATCAATGAACAGAGGATTTACAATGTGCTTCGTGTTTTTCAATGTTATATTATATACATTTCTTCCTTGACCTATCAATTTTTTTCCGTCCCGCCTGTGTTCTGAAATTTGATTCCATTTTCTAAACTGTCCGCTTAAAGATCTATTTCTTTCTCTCTGATCTCAGTAGTTGCATTCTGTTCTGCTTCGCAAAAAAAAATCAGGCTTTTGTGTGAATAATATCATCTTCATTTTTAAATCGAATGACGCAATTCTGAATAAATGCTCATTGATTTTTTTTTCATAAAATAGATTCAGAAGAATAATCCCTCTTTAATAAAATTATACGTTCTTCTTTGGTCCAGCAGATAAAATGGGCGTGAATGTGTGGACATTCGAAAAGGCCTTGAGCGTGGAGAAACATTTTCGTCAATAATCCTGTGTGTTGAAGGCCCTCCAAATTGTTGATTTTTACTGAATTTTTCTTATTCTCGGTGATACTGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>351 195 153 126 71 69 28 7</canonical_bands>
                <polymorphic_bands>351 195 195 153 71 28 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCGAAGTCACTTATACCTGTTT</pcr_primer_p1>
		<pcr_primer_p2>GCAACTACTGAGATCAGAGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACCGAAGTCACTTATACCTGTTTCGAACCAAAGAACATCCGATTGATCGCAAAATTTGAAGATCAGCGTTTAAATCAATGAACAGAGGATTTACAATGTGCTTCGTGTTTTTCAATGTTATATTATATACATTTCTTCCTTGACCTATCAATTTTTTTCCGTCCCGCCTGTGTTCTGAAATTTGATTCCATTTTCTAAACTGTCCGCTTAAAGATCTATTTCTTTCTCTCTGATCTCAGTAGTTGC</canonical_amplicon>
		<polymorphic_amplicon>ACCGAAGTCACTTATACCTGTTTCGAACCAAAGAACATCCGATTGATCGCAAAATTYGAAGATCAGCGTTTAAATCAATGAACAGAGGATTTACAATGTGCTTCGTGTTTTTCAATGTTATATTATATACATTTCTTCCTTGACCTATCAATTTTTTTCCGTCCCGCCTGTGTTCTGAAATTTGATTCCATTTTCTAAACTGTCCGCTTAAAGATCTATTTCTTTCTCTCTGATCTCAGTAGTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21583</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>754324</contig_pos>
        <strand>+</strand>
        <context>CGATTGATCG[C/T]AAAATTYGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACCGAAGTCACTTATACCTGTTTCGAACCAAAGAACATCCGATTGATCG</left_flank>
        <right_flank>AAAATTTGAAGATCAGCGTTTAAATCAATGAACAGAGGATTTACAATGTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGTTGGTGATGCCGTGATAAATAATAAAAATAAAACTATCAAAAATAAGAATCAAGATACTCCAACACCCAAAAACGTTTTCAGCTTGAACAATCTTCTTCCACCGCCGCTTATGTCATCAATGCCGCCGCCTAATCCACTCAAAAGAAAAGGTGAGTTCACGTCAATTTTATGGATTGAACTGCCGCCAACTGGCTTTTAAATTTTGCATTCCTGACCAACAAAGAGAGCTTGAATTGTTCGAAAGTTTCTTGGCCGGCACAAATAATTGAATGGTTATTTACAAGAGGGGTCCCAACGTGGCCCGTGAAACTCGCTCTCTGAAAGTTTGAATATTCGAGATAGTGAGCAATAAATTCAAAATTTCTAACACAAATTATATATTAGATTGATCATAAAAAACTAATTTTCAGTTTTTTTTCTGCATTTCCAAATTTTCAGACGCACCCACCGAAGTCACTTATACCTGTTTCGAACCAAAGAACATCCGATTGATCGCAAAATTTGAAGATCAGCGTTTAAATCAATGAACAGAGGATTTACAATGTGCTTCGTGTTTTTCAATGTTATATTATATACATTTCTTCCTTGACCTATCAATTTTTTTCCGTCCCGCCTGTGTTCTGAAATTTGATTCCATTTTCTAAACTGTCCGCTTAAAGATCTATTTCTTTCTCTCTGATCTCAGTAGTTGCATTCTGTTCTGCTTCGCAAAAAAAAATCAGGCTTTTGTGTGAATAATATCATCTTCATTTTTAAATCGAATGACGCAATTCTGAATAAATGCTCATTGATTTTTTTTTCATAAAATAGATTCAGAAGAATAATCCCTCTTTAATAAAATTATACGTTCTTCTTTGGTCCAGCAGATAAAATGGGCGTGAATGTGTGGACATTCGAAAAGGCCTTGAGCGTGGAGAAACATTTTCGTCAATAATCCTGTGTGTTGAAGGCCCTCCAAATTGTTGATTTTTACTGAATTTTTCTTATTCTCGGTGA</canonical>
            <polymorphic>CCGTTGGTGATGCCGTGATAAATAATAAAAATAAAACTATCAAAAATAAGAATCAAGATACTCCAACACCCAAAAACGTTTTCAGCTTGAACAATCTTCTTCCACCGCCGCTTATGTCATCAATGCCGCCGCCTAATCCACTCAAAAGAAAAGGTGAGTTCACGTCAATTTTATGGATTGAACTGCCGCCAACTGGCTTTTAAATTTTGCATTCCTGACCAACAAAGAGAGCTTGAATTGTTCGAAAGTTTCTTGGCCGGCACAAATAATTGAATGGTTATTTACAAGAGGGGTCCCAACGTGGCCCGTGAAACTCGCTCTCTGAAAGTTTGAATATTCGAGATAGTGAGCAATAAATTCAAAATTTCTAACACAAATTATATATTAGATTGATCATAAAAAACTAATTTTCAGTTTTTTTTCTGCATTTCCAAATTTTCAGACGCACCCACCGAAGTCACTTATACCTGTTTCGAACCAAAGAACATCCGATTGATCGYAAAATTTGAAGATCAGCGTTTAAATCAATGAACAGAGGATTTACAATGTGCTTCGTGTTTTTCAATGTTATATTATATACATTTCTTCCTTGACCTATCAATTTTTTTCCGTCCCGCCTGTGTTCTGAAATTTGATTCCATTTTCTAAACTGTCCGCTTAAAGATCTATTTCTTTCTCTCTGATCTCAGTAGTTGCATTCTGTTCTGCTTCGCAAAAAAAAATCAGGCTTTTGTGTGAATAATATCATCTTCATTTTTAAATCGAATGACGCAATTCTGAATAAATGCTCATTGATTTTTTTTTCATAAAATAGATTCAGAAGAATAATCCCTCTTTAATAAAATTATACGTTCTTCTTTGGTCCAGCAGATAAAATGGGCGTGAATGTGTGGACATTCGAAAAGGCCTTGAGCGTGGAGAAACATTTTCGTCAATAATCCTGTGTGTTGAAGGCCCTCCAAATTGTTGATTTTTACTGAATTTTTCTTATTCTCGGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAATAAATTCAAAATTTCTAACA</pcr_primer_p1>
		<pcr_primer_p2>TGATAGGTCAAGGAAGAAATGTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCAATAAATTCAAAATTTCTAACACAAATTATATATTAGATTGATCATAAAAAACTAATTTTCAGTTTTTTTTCTGCATTTCCAAATTTTCAGACGCACCCACCGAAGTCACTTATACCTGTTTCGAACCAAAGAACATCCGATTGATCGCAAAATTTGAAGATCAGCGTTTAAATCAATGAACAGAGGATTTACAATGTGCTTCGTGTTTTTCAATGTTATATTATATACATTTCTTCCTTGACCTATCA</canonical_amplicon>
		<polymorphic_amplicon>GCAATAAATTCAAAATTTCTAACACAAATTATATATTAGATTGATCATAAAAAACTAATTTTCAGTTTTTTTTCTGCATTTCCAAATTTTCAGACGCACCCACCGAAGTCACTTATACCTGTTTCGAACCAAAGAACATCCGATTGATCGYAAAATTTGAAGATCAGCGTTTAAATCAATGAACAGAGGATTTACAATGTGCTTCGTGTTTTTCAATGTTATATTATATACATTTCTTCCTTGACCTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21584</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>754172</contig_pos>
        <strand>+</strand>
        <context>TCGAGATAGT[A/G]AGCAATAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACGTGGCCCGTGAAACTCGCTCTCTGAAAGTTTGAATATTCGAGATAGT</left_flank>
        <right_flank>AGCAATAAATTCAAAATTTCTAACACAAATTATATATTAGATTGATCATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAGCAAAAATTTGGACCCGTCGCGCATCAGCGTGACGGTCGCTAGCTAAGAAACAGCATTTAAGACGGTTGAGATTTCATAAAATGTTTTGAAATTCAGCAAAATTGGCAAATTTTTCGACTGTGTTACAAAACGCATTTTCCGTATCTGCCCGTTGGTGATGCCGTGATAAATAATAAAAATAAAACTATCAAAAATAAGAATCAAGATACTCCAACACCCAAAAACGTTTTCAGCTTGAACAATCTTCTTCCACCGCCGCTTATGTCATCAATGCCGCCGCCTAATCCACTCAAAAGAAAAGGTGAGTTCACGTCAATTTTATGGATTGAACTGCCGCCAACTGGCTTTTAAATTTTGCATTCCTGACCAACAAAGAGAGCTTGAATTGTTCGAAAGTTTCTTGGCCGGCACAAATAATTGAATGGTTATTTACAAGAGGGGTCCCAACGTGGCCCGTGAAACTCGCTCTCTGAAAGTTTGAATATTCGAGATAGTGAGCAATAAATTCAAAATTTCTAACACAAATTATATATTAGATTGATCATAAAAAACTAATTTTCAGTTTTTTTTCTGCATTTCCAAATTTTCAGACGCACCCACCGAAGTCACTTATACCTGTTTCGAACCAAAGAACATCCGATTGATCGCAAAATTTGAAGATCAGCGTTTAAATCAATGAACAGAGGATTTACAATGTGCTTCGTGTTTTTCAATGTTATATTATATACATTTCTTCCTTGACCTATCAATTTTTTTCCGTCCCGCCTGTGTTCTGAAATTTGATTCCATTTTCTAAACTGTCCGCTTAAAGATCTATTTCTTTCTCTCTGATCTCAGTAGTTGCATTCTGTTCTGCTTCGCAAAAAAAAATCAGGCTTTTGTGTGAATAATATCATCTTCATTTTTAAATCGAATGACGCAATTCTGAATAAATGCTCATTGATTTTTTTTTCATAAAATAGATTCAGAAGAATAATCCCTCTTTAATAAAATTAT</canonical>
            <polymorphic>CGAGCAAAAATTTGGACCCGTCGCGCATCAGCGTGACGGTCGCTAGCTAAGAAACAGCATTTAAGACGGTTGAGATTTCATAAAATGTTTTGAAATTCAGCAAAATTGGCAAATTTTTCGACTGTGTTACAAAACGCATTTTCCGTATCTGCCCGTTGGTGATGCCGTGATAAATAATAAAAATAAAACTATCAAAAATAAGAATCAAGATACTCCAACACCCAAAAACGTTTTCAGCTTGAACAATCTTCTTCCACCGCCGCTTATGTCATCAATGCCGCCGCCTAATCCACTCAAAAGAAAAGGTGAGTTCACGTCAATTTTATGGATTGAACTGCCGCCAACTGGCTTTTAAATTTTGCATTCCTGACCAACAAAGAGAGCTTGAATTGTTCGAAAGTTTCTTGGCCGGCACAAATAATTGAATGGTTATTTACAAGAGGGGTCCCAACGTGGCCCGTGAAACTCGCTCTCTGAAAGTTTGAATATTCGAGATAGTRAGCAATAAATTCAAAATTTCTAACACAAATTATATATTAGATTGATCATAAAAAACTAATTTTCAGTTTTTTTTCTGCATTTCCAAATTTTCAGACGCACCCACCGAAGTCACTTATACCTGTTTCGAACCAAAGAACATCCGATTGATCGCAAAATTTGAAGATCAGCGTTTAAATCAATGAACAGAGGATTTACAATGTGCTTCGTGTTTTTCAATGTTATATTATATACATTTCTTCCTTGACCTATCAATTTTTTTCCGTCCCGCCTGTGTTCTGAAATTTGATTCCATTTTCTAAACTGTCCGCTTAAAGATCTATTTCTTTCTCTCTGATCTCAGTAGTTGCATTCTGTTCTGCTTCGCAAAAAAAAATCAGGCTTTTGTGTGAATAATATCATCTTCATTTTTAAATCGAATGACGCAATTCTGAATAAATGCTCATTGATTTTTTTTTCATAAAATAGATTCAGAAGAATAATCCCTCTTTAATAAAATTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>113 111 100 91 90 74 65 51 41 38 36 36 35 35 25 16 9 8 7 7 6 4 2</canonical_bands>
                <polymorphic_bands>113 111 100 91 90 74 65 63 51 41 36 36 35 35 16 9 8 7 7 6 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAATTGTTCGAAAGTTTCTT</pcr_primer_p1>
		<pcr_primer_p2>TTGGTTCGAAACAGGTATAAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGAATTGTTCGAAAGTTTCTTGGCCGGCACAAATAATTGAATGGTTATTTACAAGAGGGGTCCCAACGTGGCCCGTGAAACTCGCTCTCTGAAAGTTTGAATATTCGAGATAGTGAGCAATAAATTCAAAATTTCTAACACAAATTATATATTAGATTGATCATAAAAAACTAATTTTCAGTTTTTTTTCTGCATTTCCAAATTTTCAGACGCACCCACCGAAGTCACTTATACCTGTTTCGAACCAA</canonical_amplicon>
		<polymorphic_amplicon>TTGAATTGTTCGAAAGTTTCTTGGCCGGCACAAATAATTGAATGGTTATTTACAAGAGGGGTCCCAACGTGGCCCGTGAAACTCGCTCTCTGAAAGTTTGAATATTCGAGATAGTRAGCAATAAATTCAAAATTTCTAACACAAATTATATATTAGATTGATCATAAAAAACTAATTTTCAGTTTTTTTTCTGCATTTCCAAATTTTCAGACGCACCCACCGAAGTCACTTATACCTGTTTCGAACCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21585</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>754123</contig_pos>
        <strand>+</strand>
        <context>AGGGGTCCCA[A/G]CGTGGCCCGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCTTGGCCGGCACAAATAATTGAATGGTTATTTACAAGAGGGGTCCCA</left_flank>
        <right_flank>CGTGGCCCGTGAAACTCGCTCTCTGAAAGTTTGAATATTCGAGATAGTGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTAAATGAAGGGATAGAACGCGACAGTGCCGATTTGAAATTTGGCAACGAGCAAAAATTTGGACCCGTCGCGCATCAGCGTGACGGTCGCTAGCTAAGAAACAGCATTTAAGACGGTTGAGATTTCATAAAATGTTTTGAAATTCAGCAAAATTGGCAAATTTTTCGACTGTGTTACAAAACGCATTTTCCGTATCTGCCCGTTGGTGATGCCGTGATAAATAATAAAAATAAAACTATCAAAAATAAGAATCAAGATACTCCAACACCCAAAAACGTTTTCAGCTTGAACAATCTTCTTCCACCGCCGCTTATGTCATCAATGCCGCCGCCTAATCCACTCAAAAGAAAAGGTGAGTTCACGTCAATTTTATGGATTGAACTGCCGCCAACTGGCTTTTAAATTTTGCATTCCTGACCAACAAAGAGAGCTTGAATTGTTCGAAAGTTTCTTGGCCGGCACAAATAATTGAATGGTTATTTACAAGAGGGGTCCCAACGTGGCCCGTGAAACTCGCTCTCTGAAAGTTTGAATATTCGAGATAGTGAGCAATAAATTCAAAATTTCTAACACAAATTATATATTAGATTGATCATAAAAAACTAATTTTCAGTTTTTTTTCTGCATTTCCAAATTTTCAGACGCACCCACCGAAGTCACTTATACCTGTTTCGAACCAAAGAACATCCGATTGATCGCAAAATTTGAAGATCAGCGTTTAAATCAATGAACAGAGGATTTACAATGTGCTTCGTGTTTTTCAATGTTATATTATATACATTTCTTCCTTGACCTATCAATTTTTTTCCGTCCCGCCTGTGTTCTGAAATTTGATTCCATTTTCTAAACTGTCCGCTTAAAGATCTATTTCTTTCTCTCTGATCTCAGTAGTTGCATTCTGTTCTGCTTCGCAAAAAAAAATCAGGCTTTTGTGTGAATAATATCATCTTCATTTTTAAATCGAATGACGCAATTCTGAATAAATGCTCATTGATTTT</canonical>
            <polymorphic>AGTTAAATGAAGGGATAGAACGCGACAGTGCCGATTTGAAATTTGGCAACGAGCAAAAATTTGGACCCGTCGCGCATCAGCGTGACGGTCGCTAGCTAAGAAACAGCATTTAAGACGGTTGAGATTTCATAAAATGTTTTGAAATTCAGCAAAATTGGCAAATTTTTCGACTGTGTTACAAAACGCATTTTCCGTATCTGCCCGTTGGTGATGCCGTGATAAATAATAAAAATAAAACTATCAAAAATAAGAATCAAGATACTCCAACACCCAAAAACGTTTTCAGCTTGAACAATCTTCTTCCACCGCCGCTTATGTCATCAATGCCGCCGCCTAATCCACTCAAAAGAAAAGGTGAGTTCACGTCAATTTTATGGATTGAACTGCCGCCAACTGGCTTTTAAATTTTGCATTCCTGACCAACAAAGAGAGCTTGAATTGTTCGAAAGTTTCTTGGCCGGCACAAATAATTGAATGGTTATTTACAAGAGGGGTCCCARCGTGGCCCGTGAAACTCGCTCTCTGAAAGTTTGAATATTCGAGATAGTGAGCAATAAATTCAAAATTTCTAACACAAATTATATATTAGATTGATCATAAAAAACTAATTTTCAGTTTTTTTTCTGCATTTCCAAATTTTCAGACGCACCCACCGAAGTCACTTATACCTGTTTCGAACCAAAGAACATCCGATTGATCGCAAAATTTGAAGATCAGCGTTTAAATCAATGAACAGAGGATTTACAATGTGCTTCGTGTTTTTCAATGTTATATTATATACATTTCTTCCTTGACCTATCAATTTTTTTCCGTCCCGCCTGTGTTCTGAAATTTGATTCCATTTTCTAAACTGTCCGCTTAAAGATCTATTTCTTTCTCTCTGATCTCAGTAGTTGCATTCTGTTCTGCTTCGCAAAAAAAAATCAGGCTTTTGTGTGAATAATATCATCTTCATTTTTAAATCGAATGACGCAATTCTGAATAAATGCTCATTGATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>500 277 137 86</canonical_bands>
                <polymorphic_bands>637 277 86</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAATTGTTCGAAAGTTTCTT</pcr_primer_p1>
		<pcr_primer_p2>TTGGTTCGAAACAGGTATAAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGAATTGTTCGAAAGTTTCTTGGCCGGCACAAATAATTGAATGGTTATTTACAAGAGGGGTCCCAACGTGGCCCGTGAAACTCGCTCTCTGAAAGTTTGAATATTCGAGATAGTGAGCAATAAATTCAAAATTTCTAACACAAATTATATATTAGATTGATCATAAAAAACTAATTTTCAGTTTTTTTTCTGCATTTCCAAATTTTCAGACGCACCCACCGAAGTCACTTATACCTGTTTCGAACCAA</canonical_amplicon>
		<polymorphic_amplicon>TTGAATTGTTCGAAAGTTTCTTGGCCGGCACAAATAATTGAATGGTTATTTACAAGAGGGGTCCCARCGTGGCCCGTGAAACTCGCTCTCTGAAAGTTTGAATATTCGAGATAGTGAGCAATAAATTCAAAATTTCTAACACAAATTATATATTAGATTGATCATAAAAAACTAATTTTCAGTTTTTTTTCTGCATTTCCAAATTTTCAGACGCACCCACCGAAGTCACTTATACCTGTTTCGAACCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21587</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>759594</contig_pos>
        <strand>+</strand>
        <context>GTCATATTGT[A/G]RCACGTTTCR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAATTCTAAACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGT</left_flank>
        <right_flank>GCACGTTTCAAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCAT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATTTCTACCCATTTTTTTAATGTGATGTTCATTCGTTCCGCAATTCTAGAACAGTTCCATAAAACTTTAGAAATGAAAAAAGAAAAAAAAACAAAAAAATGATTTCAGAAAAGAATAGATCAACTGAAATGAGCAAAAAACAAGAAACTGTATCACTTTGGAACATTTTGGGGACTTTCCCAACCATGACTCTGACACCTTCTGAAAACCCCCGTCTAATATTTAAACCCCCGTTAATATTTTAAACCCCCGTTAATTGTTTAAACCCCCGTTAAATCATAAAGAGCCTAAGGTTGCAACTATCACCTCTGAACCTACTAAAGTTTCAACTATCACCTCTGAACCTACTCCAGTTTCAACTATCAAATTTTCAGCTTCTGGAGGTGGAAAAACAAAAAATGACAGCATAGTTAGGGGCTCATATAGCACACTTGTTCAAATATTCAAGAAATTCTAAACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGTAGCACGTTTCAAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACGACGCATGTGTTGTAAAACTCAAAACACAGTTGTCCACTAGATGAAATTTTGAGAATTTTTTCAATCAGTACAAGAACATGAATACTTTCATTGTTACCTAAGTTTCTGAAAAGAACCAGCTTATTCTGAGAAAATTATCCTGTTTTTAGATCATGTTTAACTAAACTTGACACAGCAATCAACAACAAAAGTATTCAATATAATTTGTATTAGAAAAAAAATATATAATTTTCATGCGGGTAATAAAAATAATTATACATTATAAAGCACCAACAAAACTTATTTCATATTTTTTGCATACAACAATAATTAAAGAGAATTTAGGGAGGAATTAGAGTAGACAGAAAATAGTGCGAGATCAATTATTAATAATAGAATGGAAGATTGGCAGTAGTTGTCGCAGGATCAGCGA</canonical>
            <polymorphic>AATATTTCTACCCATTTTTTTAATGTGATGTTCATTCGTTCCGCAATTCTAGAACAGTTCCATAAAACTTTAGAAATGAAAAAAGAAAAAAAAACAAAAAAATGATTTCAGAAAAGAATAGATCAACTGAAATGAGCAAAAAACAAGAAACTGTATCACTTTGGAACATTTTGGGGACTTTCCCAACCATGACTCTGACACCTTCTGAAAACCCCCGTCTAATATTTAAACCCCCGTTAATATTTTAAACCCCCGTTAATTGTTTAAACCCCCGTTAAATCATAAAGAGCCTAAGGTTGCAACTATCACCTCTGAACCTACTAAAGTTTCAACTATCACCTCTGAACCTACTCCAGTTTCAACTATCAAATTTTCAGCTTCTGGAGGTGGAAAAACAAAAAATGACAGCATAGTTAGGGGCTCATATAGCACACTTGTTCAAATATTCAAGAAATTCTAAACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGTRGCACGTTTCAAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACGACGCATGTGTTGTAAAACTCAAAACACAGTTGTCCACTAGATGAAATTTTGAGAATTTTTTCAATCAGTACAAGAACATGAATACTTTCATTGTTACCTAAGTTTCTGAAAAGAACCAGCTTATTCTGAGAAAATTATCCTGTTTTTAGATCATGTTTAACTAAACTTGACACAGCAATCAACAACAAAAGTATTCAATATAATTTGTATTAGAAAAAAAATATATAATTTTCATGCGGGTAATAAAAATAATTATACATTATAAAGCACCAACAAAACTTATTTCATATTTTTTGCATACAACAATAATTAAAGAGAATTTAGGGAGGAATTAGAGTAGACAGAAAATAGTGCGAGATCAATTATTAATAATAGAATGGAAGATTGGCAGTAGTTGTCGCAGGATCAGCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTACTCCAGTTTCAACTATCAA</pcr_primer_p1>
		<pcr_primer_p2>CGTAAATTGTAATTGCTTAACTAAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CCTACTCCAGTTTCAACTATCAAATTTTCAGCTTCTGGAGGTGGAAAAACAAAAAATGACAGCATAGTTAGGGGCTCATATAGCACACTTGTTCAAATATTCAAGAAATTCTAAACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGTAGCACGTTTCAAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACG</canonical_amplicon>
		<polymorphic_amplicon>CCTACTCCAGTTTCAACTATCAAATTTTCAGCTTCTGGAGGTGGAAAAACAAAAAATGACAGCATAGTTAGGGGCTCATATAGCACACTTGTTCAAATATTCAAGAAATTCTAAACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGTRGCACGTTTCAAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21588</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>759595</contig_pos>
        <strand>+</strand>
        <context>TCATATTGTR[A/G]CACGTTTCRA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAATTCTAAACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGTA</left_flank>
        <right_flank>CACGTTTCAAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCATC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATTTCTACCCATTTTTTTAATGTGATGTTCATTCGTTCCGCAATTCTAGAACAGTTCCATAAAACTTTAGAAATGAAAAAAGAAAAAAAAACAAAAAAATGATTTCAGAAAAGAATAGATCAACTGAAATGAGCAAAAAACAAGAAACTGTATCACTTTGGAACATTTTGGGGACTTTCCCAACCATGACTCTGACACCTTCTGAAAACCCCCGTCTAATATTTAAACCCCCGTTAATATTTTAAACCCCCGTTAATTGTTTAAACCCCCGTTAAATCATAAAGAGCCTAAGGTTGCAACTATCACCTCTGAACCTACTAAAGTTTCAACTATCACCTCTGAACCTACTCCAGTTTCAACTATCAAATTTTCAGCTTCTGGAGGTGGAAAAACAAAAAATGACAGCATAGTTAGGGGCTCATATAGCACACTTGTTCAAATATTCAAGAAATTCTAAACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGTAGCACGTTTCAAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACGACGCATGTGTTGTAAAACTCAAAACACAGTTGTCCACTAGATGAAATTTTGAGAATTTTTTCAATCAGTACAAGAACATGAATACTTTCATTGTTACCTAAGTTTCTGAAAAGAACCAGCTTATTCTGAGAAAATTATCCTGTTTTTAGATCATGTTTAACTAAACTTGACACAGCAATCAACAACAAAAGTATTCAATATAATTTGTATTAGAAAAAAAATATATAATTTTCATGCGGGTAATAAAAATAATTATACATTATAAAGCACCAACAAAACTTATTTCATATTTTTTGCATACAACAATAATTAAAGAGAATTTAGGGAGGAATTAGAGTAGACAGAAAATAGTGCGAGATCAATTATTAATAATAGAATGGAAGATTGGCAGTAGTTGTCGCAGGATCAGCGAT</canonical>
            <polymorphic>ATATTTCTACCCATTTTTTTAATGTGATGTTCATTCGTTCCGCAATTCTAGAACAGTTCCATAAAACTTTAGAAATGAAAAAAGAAAAAAAAACAAAAAAATGATTTCAGAAAAGAATAGATCAACTGAAATGAGCAAAAAACAAGAAACTGTATCACTTTGGAACATTTTGGGGACTTTCCCAACCATGACTCTGACACCTTCTGAAAACCCCCGTCTAATATTTAAACCCCCGTTAATATTTTAAACCCCCGTTAATTGTTTAAACCCCCGTTAAATCATAAAGAGCCTAAGGTTGCAACTATCACCTCTGAACCTACTAAAGTTTCAACTATCACCTCTGAACCTACTCCAGTTTCAACTATCAAATTTTCAGCTTCTGGAGGTGGAAAAACAAAAAATGACAGCATAGTTAGGGGCTCATATAGCACACTTGTTCAAATATTCAAGAAATTCTAAACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGTARCACGTTTCAAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACGACGCATGTGTTGTAAAACTCAAAACACAGTTGTCCACTAGATGAAATTTTGAGAATTTTTTCAATCAGTACAAGAACATGAATACTTTCATTGTTACCTAAGTTTCTGAAAAGAACCAGCTTATTCTGAGAAAATTATCCTGTTTTTAGATCATGTTTAACTAAACTTGACACAGCAATCAACAACAAAAGTATTCAATATAATTTGTATTAGAAAAAAAATATATAATTTTCATGCGGGTAATAAAAATAATTATACATTATAAAGCACCAACAAAACTTATTTCATATTTTTTGCATACAACAATAATTAAAGAGAATTTAGGGAGGAATTAGAGTAGACAGAAAATAGTGCGAGATCAATTATTAATAATAGAATGGAAGATTGGCAGTAGTTGTCGCAGGATCAGCGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTACTCCAGTTTCAACTATCAA</pcr_primer_p1>
		<pcr_primer_p2>CGTAAATTGTAATTGCTTAACTAAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CCTACTCCAGTTTCAACTATCAAATTTTCAGCTTCTGGAGGTGGAAAAACAAAAAATGACAGCATAGTTAGGGGCTCATATAGCACACTTGTTCAAATATTCAAGAAATTCTAAACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGTAGCACGTTTCAAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACG</canonical_amplicon>
		<polymorphic_amplicon>CCTACTCCAGTTTCAACTATCAAATTTTCAGCTTCTGGAGGTGGAAAAACAAAAAATGACAGCATAGTTAGGGGCTCATATAGCACACTTGTTCAAATATTCAAGAAATTCTAAACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGTARCACGTTTCAAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21589</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>759643</contig_pos>
        <strand></strand>
        <context>TACTGAATCC[A/G]TCAAAACTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGCACGTTTCAAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCC</left_flank>
        <right_flank>TCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACGACGCATGTGTT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAACAGTTCCATAAAACTTTAGAAATGAAAAAAGAAAAAAAAACAAAAAAATGATTTCAGAAAAGAATAGATCAACTGAAATGAGCAAAAAACAAGAAACTGTATCACTTTGGAACATTTTGGGGACTTTCCCAACCATGACTCTGACACCTTCTGAAAACCCCCGTCTAATATTTAAACCCCCGTTAATATTTTAAACCCCCGTTAATTGTTTAAACCCCCGTTAAATCATAAAGAGCCTAAGGTTGCAACTATCACCTCTGAACCTACTAAAGTTTCAACTATCACCTCTGAACCTACTCCAGTTTCAACTATCAAATTTTCAGCTTCTGGAGGTGGAAAAACAAAAAATGACAGCATAGTTAGGGGCTCATATAGCACACTTGTTCAAATATTCAAGAAATTCTAAACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGTAGCACGTTTCAAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACGACGCATGTGTTGTAAAACTCAAAACACAGTTGTCCACTAGATGAAATTTTGAGAATTTTTTCAATCAGTACAAGAACATGAATACTTTCATTGTTACCTAAGTTTCTGAAAAGAACCAGCTTATTCTGAGAAAATTATCCTGTTTTTAGATCATGTTTAACTAAACTTGACACAGCAATCAACAACAAAAGTATTCAATATAATTTGTATTAGAAAAAAAATATATAATTTTCATGCGGGTAATAAAAATAATTATACATTATAAAGCACCAACAAAACTTATTTCATATTTTTTGCATACAACAATAATTAAAGAGAATTTAGGGAGGAATTAGAGTAGACAGAAAATAGTGCGAGATCAATTATTAATAATAGAATGGAAGATTGGCAGTAGTTGTCGCAGGATCAGCGATACTAGTTGCCGGGGCGGCTCCTGCATTTTGAGCAGCGGTTGTTGGTGG</canonical>
            <polymorphic>TAGAACAGTTCCATAAAACTTTAGAAATGAAAAAAGAAAAAAAAACAAAAAAATGATTTCAGAAAAGAATAGATCAACTGAAATGAGCAAAAAACAAGAAACTGTATCACTTTGGAACATTTTGGGGACTTTCCCAACCATGACTCTGACACCTTCTGAAAACCCCCGTCTAATATTTAAACCCCCGTTAATATTTTAAACCCCCGTTAATTGTTTAAACCCCCGTTAAATCATAAAGAGCCTAAGGTTGCAACTATCACCTCTGAACCTACTAAAGTTTCAACTATCACCTCTGAACCTACTCCAGTTTCAACTATCAAATTTTCAGCTTCTGGAGGTGGAAAAACAAAAAATGACAGCATAGTTAGGGGCTCATATAGCACACTTGTTCAAATATTCAAGAAATTCTAAACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGTAGCACGTTTCAAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCRTCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACGACGCATGTGTTGTAAAACTCAAAACACAGTTGTCCACTAGATGAAATTTTGAGAATTTTTTCAATCAGTACAAGAACATGAATACTTTCATTGTTACCTAAGTTTCTGAAAAGAACCAGCTTATTCTGAGAAAATTATCCTGTTTTTAGATCATGTTTAACTAAACTTGACACAGCAATCAACAACAAAAGTATTCAATATAATTTGTATTAGAAAAAAAATATATAATTTTCATGCGGGTAATAAAAATAATTATACATTATAAAGCACCAACAAAACTTATTTCATATTTTTTGCATACAACAATAATTAAAGAGAATTTAGGGAGGAATTAGAGTAGACAGAAAATAGTGCGAGATCAATTATTAATAATAGAATGGAAGATTGGCAGTAGTTGTCGCAGGATCAGCGATACTAGTTGCCGGGGCGGCTCCTGCATTTTGAGCAGCGGTTGTTGGTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTCAGCTTCTGGAGGT</pcr_primer_p1>
		<pcr_primer_p2>CAAAATTTCATCTAGTGGACAAC</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>AATTTTCAGCTTCTGGAGGTGGAAAAACAAAAAATGACAGCATAGTTAGGGGCTCATATAGCACACTTGTTCAAATATTCAAGAAATTCTAAACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGTAGCACGTTTCAAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACGACGCATGTGTTGTAAAACTCAAAACACAGTTGTCCACTAGATGAAATTTTG</canonical_amplicon>
		<polymorphic_amplicon>AATTTTCAGCTTCTGGAGGTGGAAAAACAAAAAATGACAGCATAGTTAGGGGCTCATATAGCACACTTGTTCAAATATTCAAGAAATTCTAAACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGTAGCACGTTTCAAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCRTCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACGACGCATGTGTTGTAAAACTCAAAACACAGTTGTCCACTAGATGAAATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21590</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>759654</contig_pos>
        <strand>+</strand>
        <context>TCAAAACTTT[C/T]ATATTTAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTT</left_flank>
        <right_flank>ATATTTAGTTAAGCAATTACAATTTACGACGCATGTGTTGTAAAACTCAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATAAAACTTTAGAAATGAAAAAAGAAAAAAAAACAAAAAAATGATTTCAGAAAAGAATAGATCAACTGAAATGAGCAAAAAACAAGAAACTGTATCACTTTGGAACATTTTGGGGACTTTCCCAACCATGACTCTGACACCTTCTGAAAACCCCCGTCTAATATTTAAACCCCCGTTAATATTTTAAACCCCCGTTAATTGTTTAAACCCCCGTTAAATCATAAAGAGCCTAAGGTTGCAACTATCACCTCTGAACCTACTAAAGTTTCAACTATCACCTCTGAACCTACTCCAGTTTCAACTATCAAATTTTCAGCTTCTGGAGGTGGAAAAACAAAAAATGACAGCATAGTTAGGGGCTCATATAGCACACTTGTTCAAATATTCAAGAAATTCTAAACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGTAGCACGTTTCAAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACGACGCATGTGTTGTAAAACTCAAAACACAGTTGTCCACTAGATGAAATTTTGAGAATTTTTTCAATCAGTACAAGAACATGAATACTTTCATTGTTACCTAAGTTTCTGAAAAGAACCAGCTTATTCTGAGAAAATTATCCTGTTTTTAGATCATGTTTAACTAAACTTGACACAGCAATCAACAACAAAAGTATTCAATATAATTTGTATTAGAAAAAAAATATATAATTTTCATGCGGGTAATAAAAATAATTATACATTATAAAGCACCAACAAAACTTATTTCATATTTTTTGCATACAACAATAATTAAAGAGAATTTAGGGAGGAATTAGAGTAGACAGAAAATAGTGCGAGATCAATTATTAATAATAGAATGGAAGATTGGCAGTAGTTGTCGCAGGATCAGCGATACTAGTTGCCGGGGCGGCTCCTGCATTTTGAGCAGCGGTTGTTGGTGGCTGGTATGCAA</canonical>
            <polymorphic>CATAAAACTTTAGAAATGAAAAAAGAAAAAAAAACAAAAAAATGATTTCAGAAAAGAATAGATCAACTGAAATGAGCAAAAAACAAGAAACTGTATCACTTTGGAACATTTTGGGGACTTTCCCAACCATGACTCTGACACCTTCTGAAAACCCCCGTCTAATATTTAAACCCCCGTTAATATTTTAAACCCCCGTTAATTGTTTAAACCCCCGTTAAATCATAAAGAGCCTAAGGTTGCAACTATCACCTCTGAACCTACTAAAGTTTCAACTATCACCTCTGAACCTACTCCAGTTTCAACTATCAAATTTTCAGCTTCTGGAGGTGGAAAAACAAAAAATGACAGCATAGTTAGGGGCTCATATAGCACACTTGTTCAAATATTCAAGAAATTCTAAACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGTAGCACGTTTCAAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTYATATTTAGTTAAGCAATTACAATTTACGACGCATGTGTTGTAAAACTCAAAACACAGTTGTCCACTAGATGAAATTTTGAGAATTTTTTCAATCAGTACAAGAACATGAATACTTTCATTGTTACCTAAGTTTCTGAAAAGAACCAGCTTATTCTGAGAAAATTATCCTGTTTTTAGATCATGTTTAACTAAACTTGACACAGCAATCAACAACAAAAGTATTCAATATAATTTGTATTAGAAAAAAAATATATAATTTTCATGCGGGTAATAAAAATAATTATACATTATAAAGCACCAACAAAACTTATTTCATATTTTTTGCATACAACAATAATTAAAGAGAATTTAGGGAGGAATTAGAGTAGACAGAAAATAGTGCGAGATCAATTATTAATAATAGAATGGAAGATTGGCAGTAGTTGTCGCAGGATCAGCGATACTAGTTGCCGGGGCGGCTCCTGCATTTTGAGCAGCGGTTGTTGGTGGCTGGTATGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTCAGCTTCTGGAGGT</pcr_primer_p1>
		<pcr_primer_p2>CAAAATTTCATCTAGTGGACAAC</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>AATTTTCAGCTTCTGGAGGTGGAAAAACAAAAAATGACAGCATAGTTAGGGGCTCATATAGCACACTTGTTCAAATATTCAAGAAATTCTAAACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGTAGCACGTTTCAAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACGACGCATGTGTTGTAAAACTCAAAACACAGTTGTCCACTAGATGAAATTTTG</canonical_amplicon>
		<polymorphic_amplicon>AATTTTCAGCTTCTGGAGGTGGAAAAACAAAAAATGACAGCATAGTTAGGGGCTCATATAGCACACTTGTTCAAATATTCAAGAAATTCTAAACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGTAGCACGTTTCAAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTYATATTTAGTTAAGCAATTACAATTTACGACGCATGTGTTGTAAAACTCAAAACACAGTTGTCCACTAGATGAAATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21591</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>759685</contig_pos>
        <strand>+</strand>
        <context>AATTTACGAC[G/T]CATGTGTTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACGAC</left_flank>
        <right_flank>CATGTGTTGTAAAACTCAAAACACAGTTGTCCACTAGATGAAATTTTGAG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACAAAAAAATGATTTCAGAAAAGAATAGATCAACTGAAATGAGCAAAAAACAAGAAACTGTATCACTTTGGAACATTTTGGGGACTTTCCCAACCATGACTCTGACACCTTCTGAAAACCCCCGTCTAATATTTAAACCCCCGTTAATATTTTAAACCCCCGTTAATTGTTTAAACCCCCGTTAAATCATAAAGAGCCTAAGGTTGCAACTATCACCTCTGAACCTACTAAAGTTTCAACTATCACCTCTGAACCTACTCCAGTTTCAACTATCAAATTTTCAGCTTCTGGAGGTGGAAAAACAAAAAATGACAGCATAGTTAGGGGCTCATATAGCACACTTGTTCAAATATTCAAGAAATTCTAAACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGTAGCACGTTTCAAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACGACGCATGTGTTGTAAAACTCAAAACACAGTTGTCCACTAGATGAAATTTTGAGAATTTTTTCAATCAGTACAAGAACATGAATACTTTCATTGTTACCTAAGTTTCTGAAAAGAACCAGCTTATTCTGAGAAAATTATCCTGTTTTTAGATCATGTTTAACTAAACTTGACACAGCAATCAACAACAAAAGTATTCAATATAATTTGTATTAGAAAAAAAATATATAATTTTCATGCGGGTAATAAAAATAATTATACATTATAAAGCACCAACAAAACTTATTTCATATTTTTTGCATACAACAATAATTAAAGAGAATTTAGGGAGGAATTAGAGTAGACAGAAAATAGTGCGAGATCAATTATTAATAATAGAATGGAAGATTGGCAGTAGTTGTCGCAGGATCAGCGATACTAGTTGCCGGGGCGGCTCCTGCATTTTGAGCAGCGGTTGTTGGTGGCTGGTATGCAAAGTTAAATGCACCATATGGAGTCTGGGTCAT</canonical>
            <polymorphic>AAACAAAAAAATGATTTCAGAAAAGAATAGATCAACTGAAATGAGCAAAAAACAAGAAACTGTATCACTTTGGAACATTTTGGGGACTTTCCCAACCATGACTCTGACACCTTCTGAAAACCCCCGTCTAATATTTAAACCCCCGTTAATATTTTAAACCCCCGTTAATTGTTTAAACCCCCGTTAAATCATAAAGAGCCTAAGGTTGCAACTATCACCTCTGAACCTACTAAAGTTTCAACTATCACCTCTGAACCTACTCCAGTTTCAACTATCAAATTTTCAGCTTCTGGAGGTGGAAAAACAAAAAATGACAGCATAGTTAGGGGCTCATATAGCACACTTGTTCAAATATTCAAGAAATTCTAAACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGTAGCACGTTTCAAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACGACKCATGTGTTGTAAAACTCAAAACACAGTTGTCCACTAGATGAAATTTTGAGAATTTTTTCAATCAGTACAAGAACATGAATACTTTCATTGTTACCTAAGTTTCTGAAAAGAACCAGCTTATTCTGAGAAAATTATCCTGTTTTTAGATCATGTTTAACTAAACTTGACACAGCAATCAACAACAAAAGTATTCAATATAATTTGTATTAGAAAAAAAATATATAATTTTCATGCGGGTAATAAAAATAATTATACATTATAAAGCACCAACAAAACTTATTTCATATTTTTTGCATACAACAATAATTAAAGAGAATTTAGGGAGGAATTAGAGTAGACAGAAAATAGTGCGAGATCAATTATTAATAATAGAATGGAAGATTGGCAGTAGTTGTCGCAGGATCAGCGATACTAGTTGCCGGGGCGGCTCCTGCATTTTGAGCAGCGGTTGTTGGTGGCTGGTATGCAAAGTTAAATGCACCATATGGAGTCTGGGTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCTGTTTCCTCGTACTG</pcr_primer_p1>
		<pcr_primer_p2>GTTGATTGCTGTGTCAAGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACGACGCATGTGTTGTAAAACTCAAAACACAGTTGTCCACTAGATGAAATTTTGAGAATTTTTTCAATCAGTACAAGAACATGAATACTTTCATTGTTACCTAAGTTTCTGAAAAGAACCAGCTTATTCTGAGAAAATTATCCTGTTTTTAGATCATGTTTAACTAAACTTGACACAGCAATCAAC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACGACKCATGTGTTGTAAAACTCAAAACACAGTTGTCCACTAGATGAAATTTTGAGAATTTTTTCAATCAGTACAAGAACATGAATACTTTCATTGTTACCTAAGTTTCTGAAAAGAACCAGCTTATTCTGAGAAAATTATCCTGTTTTTAGATCATGTTTAACTAAACTTGACACAGCAATCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21592</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>759710</contig_pos>
        <strand>+</strand>
        <context>CTCAAAACAC[A/G]GTTGTCCACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGTTAAGCAATTACAATTTACGACGCATGTGTTGTAAAACTCAAAACAC</left_flank>
        <right_flank>GTTGTCCACTAGATGAAATTTTGAGAATTTTTTCAATCAGTACAAGAACA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAGATCAACTGAAATGAGCAAAAAACAAGAAACTGTATCACTTTGGAACATTTTGGGGACTTTCCCAACCATGACTCTGACACCTTCTGAAAACCCCCGTCTAATATTTAAACCCCCGTTAATATTTTAAACCCCCGTTAATTGTTTAAACCCCCGTTAAATCATAAAGAGCCTAAGGTTGCAACTATCACCTCTGAACCTACTAAAGTTTCAACTATCACCTCTGAACCTACTCCAGTTTCAACTATCAAATTTTCAGCTTCTGGAGGTGGAAAAACAAAAAATGACAGCATAGTTAGGGGCTCATATAGCACACTTGTTCAAATATTCAAGAAATTCTAAACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGTAGCACGTTTCAAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACGACGCATGTGTTGTAAAACTCAAAACACAGTTGTCCACTAGATGAAATTTTGAGAATTTTTTCAATCAGTACAAGAACATGAATACTTTCATTGTTACCTAAGTTTCTGAAAAGAACCAGCTTATTCTGAGAAAATTATCCTGTTTTTAGATCATGTTTAACTAAACTTGACACAGCAATCAACAACAAAAGTATTCAATATAATTTGTATTAGAAAAAAAATATATAATTTTCATGCGGGTAATAAAAATAATTATACATTATAAAGCACCAACAAAACTTATTTCATATTTTTTGCATACAACAATAATTAAAGAGAATTTAGGGAGGAATTAGAGTAGACAGAAAATAGTGCGAGATCAATTATTAATAATAGAATGGAAGATTGGCAGTAGTTGTCGCAGGATCAGCGATACTAGTTGCCGGGGCGGCTCCTGCATTTTGAGCAGCGGTTGTTGGTGGCTGGTATGCAAAGTTAAATGCACCATATGGAGTCTGGGTCATTGGCAACATTGCTGCTGACGTGGCG</canonical>
            <polymorphic>AATAGATCAACTGAAATGAGCAAAAAACAAGAAACTGTATCACTTTGGAACATTTTGGGGACTTTCCCAACCATGACTCTGACACCTTCTGAAAACCCCCGTCTAATATTTAAACCCCCGTTAATATTTTAAACCCCCGTTAATTGTTTAAACCCCCGTTAAATCATAAAGAGCCTAAGGTTGCAACTATCACCTCTGAACCTACTAAAGTTTCAACTATCACCTCTGAACCTACTCCAGTTTCAACTATCAAATTTTCAGCTTCTGGAGGTGGAAAAACAAAAAATGACAGCATAGTTAGGGGCTCATATAGCACACTTGTTCAAATATTCAAGAAATTCTAAACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGTAGCACGTTTCAAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACGACGCATGTGTTGTAAAACTCAAAACACRGTTGTCCACTAGATGAAATTTTGAGAATTTTTTCAATCAGTACAAGAACATGAATACTTTCATTGTTACCTAAGTTTCTGAAAAGAACCAGCTTATTCTGAGAAAATTATCCTGTTTTTAGATCATGTTTAACTAAACTTGACACAGCAATCAACAACAAAAGTATTCAATATAATTTGTATTAGAAAAAAAATATATAATTTTCATGCGGGTAATAAAAATAATTATACATTATAAAGCACCAACAAAACTTATTTCATATTTTTTGCATACAACAATAATTAAAGAGAATTTAGGGAGGAATTAGAGTAGACAGAAAATAGTGCGAGATCAATTATTAATAATAGAATGGAAGATTGGCAGTAGTTGTCGCAGGATCAGCGATACTAGTTGCCGGGGCGGCTCCTGCATTTTGAGCAGCGGTTGTTGGTGGCTGGTATGCAAAGTTAAATGCACCATATGGAGTCTGGGTCATTGGCAACATTGCTGCTGACGTGGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCTGTTTCCTCGTACTG</pcr_primer_p1>
		<pcr_primer_p2>GTTGATTGCTGTGTCAAGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACGACGCATGTGTTGTAAAACTCAAAACACAGTTGTCCACTAGATGAAATTTTGAGAATTTTTTCAATCAGTACAAGAACATGAATACTTTCATTGTTACCTAAGTTTCTGAAAAGAACCAGCTTATTCTGAGAAAATTATCCTGTTTTTAGATCATGTTTAACTAAACTTGACACAGCAATCAAC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACGACGCATGTGTTGTAAAACTCAAAACACRGTTGTCCACTAGATGAAATTTTGAGAATTTTTTCAATCAGTACAAGAACATGAATACTTTCATTGTTACCTAAGTTTCTGAAAAGAACCAGCTTATTCTGAGAAAATTATCCTGTTTTTAGATCATGTTTAACTAAACTTGACACAGCAATCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21593</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>759768</contig_pos>
        <strand>+</strand>
        <context>ACATGAATAC[G/T]TTCATTRTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTAGATGAAATTTTGAGAATTTTTTCAATCAGTACAAGAACATGAATAC</left_flank>
        <right_flank>TTCATTGTTACCTAAGTTTCTGAAAAGAACCAGCTTATTCTGAGAAAATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGACTTTCCCAACCATGACTCTGACACCTTCTGAAAACCCCCGTCTAATATTTAAACCCCCGTTAATATTTTAAACCCCCGTTAATTGTTTAAACCCCCGTTAAATCATAAAGAGCCTAAGGTTGCAACTATCACCTCTGAACCTACTAAAGTTTCAACTATCACCTCTGAACCTACTCCAGTTTCAACTATCAAATTTTCAGCTTCTGGAGGTGGAAAAACAAAAAATGACAGCATAGTTAGGGGCTCATATAGCACACTTGTTCAAATATTCAAGAAATTCTAAACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGTAGCACGTTTCAAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACGACGCATGTGTTGTAAAACTCAAAACACAGTTGTCCACTAGATGAAATTTTGAGAATTTTTTCAATCAGTACAAGAACATGAATACTTTCATTGTTACCTAAGTTTCTGAAAAGAACCAGCTTATTCTGAGAAAATTATCCTGTTTTTAGATCATGTTTAACTAAACTTGACACAGCAATCAACAACAAAAGTATTCAATATAATTTGTATTAGAAAAAAAATATATAATTTTCATGCGGGTAATAAAAATAATTATACATTATAAAGCACCAACAAAACTTATTTCATATTTTTTGCATACAACAATAATTAAAGAGAATTTAGGGAGGAATTAGAGTAGACAGAAAATAGTGCGAGATCAATTATTAATAATAGAATGGAAGATTGGCAGTAGTTGTCGCAGGATCAGCGATACTAGTTGCCGGGGCGGCTCCTGCATTTTGAGCAGCGGTTGTTGGTGGCTGGTATGCAAAGTTAAATGCACCATATGGAGTCTGGGTCATTGGCAACATTGCTGCTGACGTGGCGAAGCTTTGAGCCGGACGAGTAGCCAGATTGGGGTAGTATTGGTAAGCCTGTGATGCTG</canonical>
            <polymorphic>GGACTTTCCCAACCATGACTCTGACACCTTCTGAAAACCCCCGTCTAATATTTAAACCCCCGTTAATATTTTAAACCCCCGTTAATTGTTTAAACCCCCGTTAAATCATAAAGAGCCTAAGGTTGCAACTATCACCTCTGAACCTACTAAAGTTTCAACTATCACCTCTGAACCTACTCCAGTTTCAACTATCAAATTTTCAGCTTCTGGAGGTGGAAAAACAAAAAATGACAGCATAGTTAGGGGCTCATATAGCACACTTGTTCAAATATTCAAGAAATTCTAAACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGTAGCACGTTTCAAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACGACGCATGTGTTGTAAAACTCAAAACACAGTTGTCCACTAGATGAAATTTTGAGAATTTTTTCAATCAGTACAAGAACATGAATACKTTCATTGTTACCTAAGTTTCTGAAAAGAACCAGCTTATTCTGAGAAAATTATCCTGTTTTTAGATCATGTTTAACTAAACTTGACACAGCAATCAACAACAAAAGTATTCAATATAATTTGTATTAGAAAAAAAATATATAATTTTCATGCGGGTAATAAAAATAATTATACATTATAAAGCACCAACAAAACTTATTTCATATTTTTTGCATACAACAATAATTAAAGAGAATTTAGGGAGGAATTAGAGTAGACAGAAAATAGTGCGAGATCAATTATTAATAATAGAATGGAAGATTGGCAGTAGTTGTCGCAGGATCAGCGATACTAGTTGCCGGGGCGGCTCCTGCATTTTGAGCAGCGGTTGTTGGTGGCTGGTATGCAAAGTTAAATGCACCATATGGAGTCTGGGTCATTGGCAACATTGCTGCTGACGTGGCGAAGCTTTGAGCCGGACGAGTAGCCAGATTGGGGTAGTATTGGTAAGCCTGTGATGCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCACTAGATGAAATTTTGAGAA</pcr_primer_p1>
		<pcr_primer_p2>AAATAAGTTTTGTTGGTGCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TCCACTAGATGAAATTTTGAGAATTTTTTCAATCAGTACAAGAACATGAATACTTTCATTGTTACCTAAGTTTCTGAAAAGAACCAGCTTATTCTGAGAAAATTATCCTGTTTTTAGATCATGTTTAACTAAACTTGACACAGCAATCAACAACAAAAGTATTCAATATAATTTGTATTAGAAAAAAAATATATAATTTTCATGCGGGTAATAAAAATAATTATACATTATAAAGCACCAACAAAACTTATTT</canonical_amplicon>
		<polymorphic_amplicon>TCCACTAGATGAAATTTTGAGAATTTTTTCAATCAGTACAAGAACATGAATACKTTCATTGTTACCTAAGTTTCTGAAAAGAACCAGCTTATTCTGAGAAAATTATCCTGTTTTTAGATCATGTTTAACTAAACTTGACACAGCAATCAACAACAAAAGTATTCAATATAATTTGTATTAGAAAAAAAATATATAATTTTCATGCGGGTAATAAAAATAATTATACATTATAAAGCACCAACAAAACTTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21594</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>759775</contig_pos>
        <strand>+</strand>
        <context>TACKTTCATT[A/G]TTACCTAAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAATTTTGAGAATTTTTTCAATCAGTACAAGAACATGAATACTTTCATT</left_flank>
        <right_flank>TTACCTAAGTTTCTGAAAAGAACCAGCTTATTCTGAGAAAATTATCCTGT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCAACCATGACTCTGACACCTTCTGAAAACCCCCGTCTAATATTTAAACCCCCGTTAATATTTTAAACCCCCGTTAATTGTTTAAACCCCCGTTAAATCATAAAGAGCCTAAGGTTGCAACTATCACCTCTGAACCTACTAAAGTTTCAACTATCACCTCTGAACCTACTCCAGTTTCAACTATCAAATTTTCAGCTTCTGGAGGTGGAAAAACAAAAAATGACAGCATAGTTAGGGGCTCATATAGCACACTTGTTCAAATATTCAAGAAATTCTAAACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGTAGCACGTTTCAAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACGACGCATGTGTTGTAAAACTCAAAACACAGTTGTCCACTAGATGAAATTTTGAGAATTTTTTCAATCAGTACAAGAACATGAATACTTTCATTGTTACCTAAGTTTCTGAAAAGAACCAGCTTATTCTGAGAAAATTATCCTGTTTTTAGATCATGTTTAACTAAACTTGACACAGCAATCAACAACAAAAGTATTCAATATAATTTGTATTAGAAAAAAAATATATAATTTTCATGCGGGTAATAAAAATAATTATACATTATAAAGCACCAACAAAACTTATTTCATATTTTTTGCATACAACAATAATTAAAGAGAATTTAGGGAGGAATTAGAGTAGACAGAAAATAGTGCGAGATCAATTATTAATAATAGAATGGAAGATTGGCAGTAGTTGTCGCAGGATCAGCGATACTAGTTGCCGGGGCGGCTCCTGCATTTTGAGCAGCGGTTGTTGGTGGCTGGTATGCAAAGTTAAATGCACCATATGGAGTCTGGGTCATTGGCAACATTGCTGCTGACGTGGCGAAGCTTTGAGCCGGACGAGTAGCCAGATTGGGGTAGTATTGGTAAGCCTGTGATGCTGCTGGAAC</canonical>
            <polymorphic>CCCAACCATGACTCTGACACCTTCTGAAAACCCCCGTCTAATATTTAAACCCCCGTTAATATTTTAAACCCCCGTTAATTGTTTAAACCCCCGTTAAATCATAAAGAGCCTAAGGTTGCAACTATCACCTCTGAACCTACTAAAGTTTCAACTATCACCTCTGAACCTACTCCAGTTTCAACTATCAAATTTTCAGCTTCTGGAGGTGGAAAAACAAAAAATGACAGCATAGTTAGGGGCTCATATAGCACACTTGTTCAAATATTCAAGAAATTCTAAACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGTAGCACGTTTCAAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACGACGCATGTGTTGTAAAACTCAAAACACAGTTGTCCACTAGATGAAATTTTGAGAATTTTTTCAATCAGTACAAGAACATGAATACTTTCATTRTTACCTAAGTTTCTGAAAAGAACCAGCTTATTCTGAGAAAATTATCCTGTTTTTAGATCATGTTTAACTAAACTTGACACAGCAATCAACAACAAAAGTATTCAATATAATTTGTATTAGAAAAAAAATATATAATTTTCATGCGGGTAATAAAAATAATTATACATTATAAAGCACCAACAAAACTTATTTCATATTTTTTGCATACAACAATAATTAAAGAGAATTTAGGGAGGAATTAGAGTAGACAGAAAATAGTGCGAGATCAATTATTAATAATAGAATGGAAGATTGGCAGTAGTTGTCGCAGGATCAGCGATACTAGTTGCCGGGGCGGCTCCTGCATTTTGAGCAGCGGTTGTTGGTGGCTGGTATGCAAAGTTAAATGCACCATATGGAGTCTGGGTCATTGGCAACATTGCTGCTGACGTGGCGAAGCTTTGAGCCGGACGAGTAGCCAGATTGGGGTAGTATTGGTAAGCCTGTGATGCTGCTGGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCACTAGATGAAATTTTGAGAA</pcr_primer_p1>
		<pcr_primer_p2>AAATAAGTTTTGTTGGTGCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TCCACTAGATGAAATTTTGAGAATTTTTTCAATCAGTACAAGAACATGAATACTTTCATTGTTACCTAAGTTTCTGAAAAGAACCAGCTTATTCTGAGAAAATTATCCTGTTTTTAGATCATGTTTAACTAAACTTGACACAGCAATCAACAACAAAAGTATTCAATATAATTTGTATTAGAAAAAAAATATATAATTTTCATGCGGGTAATAAAAATAATTATACATTATAAAGCACCAACAAAACTTATTT</canonical_amplicon>
		<polymorphic_amplicon>TCCACTAGATGAAATTTTGAGAATTTTTTCAATCAGTACAAGAACATGAATACTTTCATTRTTACCTAAGTTTCTGAAAAGAACCAGCTTATTCTGAGAAAATTATCCTGTTTTTAGATCATGTTTAACTAAACTTGACACAGCAATCAACAACAAAAGTATTCAATATAATTTGTATTAGAAAAAAAATATATAATTTTCATGCGGGTAATAAAAATAATTATACATTATAAAGCACCAACAAAACTTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21595</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>759881</contig_pos>
        <strand></strand>
        <context>AAGTATTCaa[T/A]ataatttgta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GATCATGTTTAACTAAACTTGACACAGCAATCAACAACAAAAGTATTCAA</left_flank>
        <right_flank>ATAATTTGTATTAGAAAAAAAATATATAATTTTCATGCGGGTAATAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCTAAGGTTGCAACTATCACCTCTGAACCTACTAAAGTTTCAACTATCACCTCTGAACCTACTCCAGTTTCAACTATCAAATTTTCAGCTTCTGGAGGTGGAAAAACAAAAAATGACAGCATAGTTAGGGGCTCATATAGCACACTTGTTCAAATATTCAAGAAATTCTAAACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGTAGCACGTTTCAAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACGACGCATGTGTTGTAAAACTCAAAACACAGTTGTCCACTAGATGAAATTTTGAGAATTTTTTCAATCAGTACAAGAACATGAATACTTTCATTGTTACCTAAGTTTCTGAAAAGAACCAGCTTATTCTGAGAAAATTATCCTGTTTTTAGATCATGTTTAACTAAACTTGACACAGCAATCAACAACAAAAGTATTCAATATAATTTGTATTAGAAAAAAAATATATAATTTTCATGCGGGTAATAAAAATAATTATACATTATAAAGCACCAACAAAACTTATTTCATATTTTTTGCATACAACAATAATTAAAGAGAATTTAGGGAGGAATTAGAGTAGACAGAAAATAGTGCGAGATCAATTATTAATAATAGAATGGAAGATTGGCAGTAGTTGTCGCAGGATCAGCGATACTAGTTGCCGGGGCGGCTCCTGCATTTTGAGCAGCGGTTGTTGGTGGCTGGTATGCAAAGTTAAATGCACCATATGGAGTCTGGGTCATTGGCAACATTGCTGCTGACGTGGCGAAGCTTTGAGCCGGACGAGTAGCCAGATTGGGGTAGTATTGGTAAGCCTGTGATGCTGCTGGAACAGTTATAGAAGATGATGGTGTTGCTGGCGCTGAACTTTGGGAGGCGTTTGATGTCTTGGATTCAACTGATTTGGCACTCTTTGGTTTCCGCTTTGGTTGGAACTTG</canonical>
            <polymorphic>AGCCTAAGGTTGCAACTATCACCTCTGAACCTACTAAAGTTTCAACTATCACCTCTGAACCTACTCCAGTTTCAACTATCAAATTTTCAGCTTCTGGAGGTGGAAAAACAAAAAATGACAGCATAGTTAGGGGCTCATATAGCACACTTGTTCAAATATTCAAGAAATTCTAAACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGTAGCACGTTTCAAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACGACGCATGTGTTGTAAAACTCAAAACACAGTTGTCCACTAGATGAAATTTTGAGAATTTTTTCAATCAGTACAAGAACATGAATACTTTCATTGTTACCTAAGTTTCTGAAAAGAACCAGCTTATTCTGAGAAAATTATCCTGTTTTTAGATCATGTTTAACTAAACTTGACACAGCAATCAACAACAAAAGTATTCAAWATAATTTGTATTAGAAAAAAAATATATAATTTTCATGCGGGTAATAAAAATAATTATACATTATAAAGCACCAACAAAACTTATTTCATATTTTTTGCATACAACAATAATTAAAGAGAATTTAGGGAGGAATTAGAGTAGACAGAAAATAGTGCGAGATCAATTATTAATAATAGAATGGAAGATTGGCAGTAGTTGTCGCAGGATCAGCGATACTAGTTGCCGGGGCGGCTCCTGCATTTTGAGCAGCGGTTGTTGGTGGCTGGTATGCAAAGTTAAATGCACCATATGGAGTCTGGGTCATTGGCAACATTGCTGCTGACGTGGCGAAGCTTTGAGCCGGACGAGTAGCCAGATTGGGGTAGTATTGGTAAGCCTGTGATGCTGCTGGAACAGTTATAGAAGATGATGGTGTTGCTGGCGCTGAACTTTGGGAGGCGTTTGATGTCTTGGATTCAACTGATTTGGCACTCTTTGGTTTCCGCTTTGGTTGGAACTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAACCAGCTTATTCTGAG</pcr_primer_p1>
		<pcr_primer_p2>TCTCGCACTATTTTCTGTCTACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAACCAGCTTATTCTGAGAAAATTATCCTGTTTTTAGATCATGTTTAACTAAACTTGACACAGCAATCAACAACAAAAGTATTCAATATAATTTGTATTAGAAAAAAAATATATAATTTTCATGCGGGTAATAAAAATAATTATACATTATAAAGCACCAACAAAACTTATTTCATATTTTTTGCATACAACAATAATTAAAGAGAATTTAGGGAGGAATTAGAGTAGACAGAAAATAGTGCGAGA</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAACCAGCTTATTCTGAGAAAATTATCCTGTTTTTAGATCATGTTTAACTAAACTTGACACAGCAATCAACAACAAAAGTATTCAAWATAATTTGTATTAGAAAAAAAATATATAATTTTCATGCGGGTAATAAAAATAATTATACATTATAAAGCACCAACAAAACTTATTTCATATTTTTTGCATACAACAATAATTAAAGAGAATTTAGGGAGGAATTAGAGTAGACAGAAAATAGTGCGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21629</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>761753</contig_pos>
        <strand>+</strand>
        <context>GTAAGTTTTC[A/G]AATTATCTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAAGGAAACACGGAGTAATCCAATGGAAAAATCATTTTGTAAGTTTTC</left_flank>
        <right_flank>AATTATCTATGAGTTAAGTAGCGGGGGAATTATTAGGGGAATACTTTTCA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCCTTGAAACACAGATGGTTTCTTACAGATTTTTTACTTTTCCATTAATTCATGTCTTCTACTTTTTCCTCACTAACCTTTTCAAAATCCGCTTTCAATTTGTGCGCCTCGTCAATATATGGCTTTTTATCCTCGTCAGTCATACCCTTCCAAACTTCTCCGAGCTGTTTGCTAATGTCGGACGGCTTCATTCCTGGCTGACCTTTCATCAATTCGCCTCTGCGCTTCTGACAAAACAGCAAAAATGGGTTCATTGGCCGTTTCACACGATCTGCTGAATCCTGACTAGGCCTCTGTTGTCGTTGCGAGAGATCGTACGGTTGATAGCCTCTCCCACCGGAACTTCCTTGAAGATCCTGGCTAGACATGGTGGCGTCTGCAAAAAAGAAATCATTAGAATCAACAATAATATGAAGATTGACAAAAAAGAAGTTGAAAGATAAATTCAAGAAAGGAAACACGGAGTAATCCAATGGAAAAATCATTTTGTAAGTTTTCGAATTATCTATGAGTTAAGTAGCGGGGGAATTATTAGGGGAATACTTTTCACATCGCTCGCGCTCTACCGCACCGCCGAAAAGTTTGGTTGGAAGAGTTTGGTTGGCTGGCGGCCGGGGGCCAGCGGCGATATTTTAATTTTAAAACTATTTTTGATCTAGTTTCTTCAATAACACTTCATTTTTCATAGTTTTTCTACGGAAATAAAGTGTTATTGAAAAAAAATAGATCAAAAATTGTTTTAAAATCAAAATATCGCCGCCGGCCCCGGCCGCCAGCCAACCAAACTTTTTCATTTGGGCGGTGCGGTAGAGCGCGAGCGATGTGAAAAGTATTTCCCTAATATCTATGAGTTAAGCAATTCATTCGAATTCATTAAAGTTACTATTTTTATCAATTTCGGTTCATCGAAACGGTTTTGGGAATAAATGCATCAAACATAATTAAATAAAAATTAAATAGGTTGAAGACTTCACAAAGACGCTCAAATAAGTTATGGAG</canonical>
            <polymorphic>TCCCTTGAAACACAGATGGTTTCTTACAGATTTTTTACTTTTCCATTAATTCATGTCTTCTACTTTTTCCTCACTAACCTTTTCAAAATCCGCTTTCAATTTGTGCGCCTCGTCAATATATGGCTTTTTATCCTCGTCAGTCATACCCTTCCAAACTTCTCCGAGCTGTTTGCTAATGTCGGACGGCTTCATTCCTGGCTGACCTTTCATCAATTCGCCTCTGCGCTTCTGACAAAACAGCAAAAATGGGTTCATTGGCCGTTTCACACGATCTGCTGAATCCTGACTAGGCCTCTGTTGTCGTTGCGAGAGATCGTACGGTTGATAGCCTCTCCCACCGGAACTTCCTTGAAGATCCTGGCTAGACATGGTGGCGTCTGCAAAAAAGAAATCATTAGAATCAACAATAATATGAAGATTGACAAAAAAGAAGTTGAAAGATAAATTCAAGAAAGGAAACACGGAGTAATCCAATGGAAAAATCATTTTGTAAGTTTTCRAATTATCTATGAGTTAAGTAGCGGGGGAATTATTAGGGGAATACTTTTCACATCGCTCGCGCTCTACCGCACCGCCGAAAAGTTTGGTTGGAAGAGTTTGGTTGGCTGGCGGCCGGGGGCCAGCGGCGATATTTTAATTTTAAAACTATTTTTGATCTAGTTTCTTCAATAACACTTCATTTTTCATAGTTTTTCTACGGAAATAAAGTGTTATTGAAAAAAAATAGATCAAAAATTGTTTTAAAATCAAAATATCGCCGCCGGCCCCGGCCGCCAGCCAACCAAACTTTTTCATTTGGGCGGTGCGGTAGAGCGCGAGCGATGTGAAAAGTATTTCCCTAATATCTATGAGTTAAGCAATTCATTCGAATTCATTAAAGTTACTATTTTTATCAATTTCGGTTCATCGAAACGGTTTTGGGAATAAATGCATCAAACATAATTAAATAAAAATTAAATAGGTTGAAGACTTCACAAAGACGCTCAAATAAGTTATGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>498 368 134</canonical_bands>
                <polymorphic_bands>866 134</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 368 92 41</canonical_bands>
                <polymorphic_bands>867 92 41</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGATAAATTCAAGAAAGGAAACA</pcr_primer_p1>
		<pcr_primer_p2>TGAAAAATGAAGTGTTATTGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGATAAATTCAAGAAAGGAAACACGGAGTAATCCAATGGAAAAATCATTTTGTAAGTTTTCGAATTATCTATGAGTTAAGTAGCGGGGGAATTATTAGGGGAATACTTTTCACATCGCTCGCGCTCTACCGCACCGCCGAAAAGTTTGGTTGGAAGAGTTTGGTTGGCTGGCGGCCGGGGGCCAGCGGCGATATTTTAATTTTAAAACTATTTTTGATCTAGTTTCTTCAATAACACTTCATTTTTCA</canonical_amplicon>
		<polymorphic_amplicon>AAGATAAATTCAAGAAAGGAAACACGGAGTAATCCAATGGAAAAATCATTTTGTAAGTTTTCRAATTATCTATGAGTTAAGTAGCGGGGGAATTATTAGGGGAATACTTTTCACATCGCTCGCGCTCTACCGCACCGCCGAAAAGTTTGGTTGGAAGAGTTTGGTTGGCTGGCGGCCGGGGGCCAGCGGCGATATTTTAATTTTAAAACTATTTTTGATCTAGTTTCTTCAATAACACTTCATTTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21630</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>761729</contig_pos>
        <strand>+</strand>
        <context>GTAATCCAAT[A/G]GAAAAATCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAGAAGTTGAAAGATAAATTCAAGAAAGGAAACACGGAGTAATCCAAT</left_flank>
        <right_flank>GAAAAATCATTTTGTAAGTTTTCGAATTATCTATGAGTTAAGTAGCGGGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCAATTCAAGGTTGCCCCCTGTCCCTTGAAACACAGATGGTTTCTTACAGATTTTTTACTTTTCCATTAATTCATGTCTTCTACTTTTTCCTCACTAACCTTTTCAAAATCCGCTTTCAATTTGTGCGCCTCGTCAATATATGGCTTTTTATCCTCGTCAGTCATACCCTTCCAAACTTCTCCGAGCTGTTTGCTAATGTCGGACGGCTTCATTCCTGGCTGACCTTTCATCAATTCGCCTCTGCGCTTCTGACAAAACAGCAAAAATGGGTTCATTGGCCGTTTCACACGATCTGCTGAATCCTGACTAGGCCTCTGTTGTCGTTGCGAGAGATCGTACGGTTGATAGCCTCTCCCACCGGAACTTCCTTGAAGATCCTGGCTAGACATGGTGGCGTCTGCAAAAAAGAAATCATTAGAATCAACAATAATATGAAGATTGACAAAAAAGAAGTTGAAAGATAAATTCAAGAAAGGAAACACGGAGTAATCCAATGGAAAAATCATTTTGTAAGTTTTCGAATTATCTATGAGTTAAGTAGCGGGGGAATTATTAGGGGAATACTTTTCACATCGCTCGCGCTCTACCGCACCGCCGAAAAGTTTGGTTGGAAGAGTTTGGTTGGCTGGCGGCCGGGGGCCAGCGGCGATATTTTAATTTTAAAACTATTTTTGATCTAGTTTCTTCAATAACACTTCATTTTTCATAGTTTTTCTACGGAAATAAAGTGTTATTGAAAAAAAATAGATCAAAAATTGTTTTAAAATCAAAATATCGCCGCCGGCCCCGGCCGCCAGCCAACCAAACTTTTTCATTTGGGCGGTGCGGTAGAGCGCGAGCGATGTGAAAAGTATTTCCCTAATATCTATGAGTTAAGCAATTCATTCGAATTCATTAAAGTTACTATTTTTATCAATTTCGGTTCATCGAAACGGTTTTGGGAATAAATGCATCAAACATAATTAAATAAAAATTAAATAGGTTGAAGACTTCACA</canonical>
            <polymorphic>TTTCCAATTCAAGGTTGCCCCCTGTCCCTTGAAACACAGATGGTTTCTTACAGATTTTTTACTTTTCCATTAATTCATGTCTTCTACTTTTTCCTCACTAACCTTTTCAAAATCCGCTTTCAATTTGTGCGCCTCGTCAATATATGGCTTTTTATCCTCGTCAGTCATACCCTTCCAAACTTCTCCGAGCTGTTTGCTAATGTCGGACGGCTTCATTCCTGGCTGACCTTTCATCAATTCGCCTCTGCGCTTCTGACAAAACAGCAAAAATGGGTTCATTGGCCGTTTCACACGATCTGCTGAATCCTGACTAGGCCTCTGTTGTCGTTGCGAGAGATCGTACGGTTGATAGCCTCTCCCACCGGAACTTCCTTGAAGATCCTGGCTAGACATGGTGGCGTCTGCAAAAAAGAAATCATTAGAATCAACAATAATATGAAGATTGACAAAAAAGAAGTTGAAAGATAAATTCAAGAAAGGAAACACGGAGTAATCCAATRGAAAAATCATTTTGTAAGTTTTCGAATTATCTATGAGTTAAGTAGCGGGGGAATTATTAGGGGAATACTTTTCACATCGCTCGCGCTCTACCGCACCGCCGAAAAGTTTGGTTGGAAGAGTTTGGTTGGCTGGCGGCCGGGGGCCAGCGGCGATATTTTAATTTTAAAACTATTTTTGATCTAGTTTCTTCAATAACACTTCATTTTTCATAGTTTTTCTACGGAAATAAAGTGTTATTGAAAAAAAATAGATCAAAAATTGTTTTAAAATCAAAATATCGCCGCCGGCCCCGGCCGCCAGCCAACCAAACTTTTTCATTTGGGCGGTGCGGTAGAGCGCGAGCGATGTGAAAAGTATTTCCCTAATATCTATGAGTTAAGCAATTCATTCGAATTCATTAAAGTTACTATTTTTATCAATTTCGGTTCATCGAAACGGTTTTGGGAATAAATGCATCAAACATAATTAAATAAAAATTAAATAGGTTGAAGACTTCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGATCGTACGGTTGATAGC</pcr_primer_p1>
		<pcr_primer_p2>GATGTGAAAAGTATTCCCCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAGATCGTACGGTTGATAGCCTCTCCCACCGGAACTTCCTTGAAGATCCTGGCTAGACATGGTGGCGTCTGCAAAAAAGAAATCATTAGAATCAACAATAATATGAAGATTGACAAAAAAGAAGTTGAAAGATAAATTCAAGAAAGGAAACACGGAGTAATCCAATGGAAAAATCATTTTGTAAGTTTTCGAATTATCTATGAGTTAAGTAGCGGGGGAATTATTAGGGGAATACTTTTCACATC</canonical_amplicon>
		<polymorphic_amplicon>AGAGATCGTACGGTTGATAGCCTCTCCCACCGGAACTTCCTTGAAGATCCTGGCTAGACATGGTGGCGTCTGCAAAAAAGAAATCATTAGAATCAACAATAATATGAAGATTGACAAAAAAGAAGTTGAAAGATAAATTCAAGAAAGGAAACACGGAGTAATCCAATRGAAAAATCATTTTGTAAGTTTTCGAATTATCTATGAGTTAAGTAGCGGGGGAATTATTAGGGGAATACTTTTCACATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21631</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>761715</contig_pos>
        <strand>+</strand>
        <context>AAAGGAAACA[A/C]GGAGTAATCC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGAAGATTGACAAAAAAGAAGTTGAAAGATAAATTCAAGAAAGGAAACA</left_flank>
        <right_flank>GGAGTAATCCAATGGAAAAATCATTTTGTAAGTTTTCGAATTATCTATGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCTCACATGCTATTTCCAATTCAAGGTTGCCCCCTGTCCCTTGAAACACAGATGGTTTCTTACAGATTTTTTACTTTTCCATTAATTCATGTCTTCTACTTTTTCCTCACTAACCTTTTCAAAATCCGCTTTCAATTTGTGCGCCTCGTCAATATATGGCTTTTTATCCTCGTCAGTCATACCCTTCCAAACTTCTCCGAGCTGTTTGCTAATGTCGGACGGCTTCATTCCTGGCTGACCTTTCATCAATTCGCCTCTGCGCTTCTGACAAAACAGCAAAAATGGGTTCATTGGCCGTTTCACACGATCTGCTGAATCCTGACTAGGCCTCTGTTGTCGTTGCGAGAGATCGTACGGTTGATAGCCTCTCCCACCGGAACTTCCTTGAAGATCCTGGCTAGACATGGTGGCGTCTGCAAAAAAGAAATCATTAGAATCAACAATAATATGAAGATTGACAAAAAAGAAGTTGAAAGATAAATTCAAGAAAGGAAACACGGAGTAATCCAATGGAAAAATCATTTTGTAAGTTTTCGAATTATCTATGAGTTAAGTAGCGGGGGAATTATTAGGGGAATACTTTTCACATCGCTCGCGCTCTACCGCACCGCCGAAAAGTTTGGTTGGAAGAGTTTGGTTGGCTGGCGGCCGGGGGCCAGCGGCGATATTTTAATTTTAAAACTATTTTTGATCTAGTTTCTTCAATAACACTTCATTTTTCATAGTTTTTCTACGGAAATAAAGTGTTATTGAAAAAAAATAGATCAAAAATTGTTTTAAAATCAAAATATCGCCGCCGGCCCCGGCCGCCAGCCAACCAAACTTTTTCATTTGGGCGGTGCGGTAGAGCGCGAGCGATGTGAAAAGTATTTCCCTAATATCTATGAGTTAAGCAATTCATTCGAATTCATTAAAGTTACTATTTTTATCAATTTCGGTTCATCGAAACGGTTTTGGGAATAAATGCATCAAACATAATTAAATAAAAATTAAATAGG</canonical>
            <polymorphic>CTTCTCACATGCTATTTCCAATTCAAGGTTGCCCCCTGTCCCTTGAAACACAGATGGTTTCTTACAGATTTTTTACTTTTCCATTAATTCATGTCTTCTACTTTTTCCTCACTAACCTTTTCAAAATCCGCTTTCAATTTGTGCGCCTCGTCAATATATGGCTTTTTATCCTCGTCAGTCATACCCTTCCAAACTTCTCCGAGCTGTTTGCTAATGTCGGACGGCTTCATTCCTGGCTGACCTTTCATCAATTCGCCTCTGCGCTTCTGACAAAACAGCAAAAATGGGTTCATTGGCCGTTTCACACGATCTGCTGAATCCTGACTAGGCCTCTGTTGTCGTTGCGAGAGATCGTACGGTTGATAGCCTCTCCCACCGGAACTTCCTTGAAGATCCTGGCTAGACATGGTGGCGTCTGCAAAAAAGAAATCATTAGAATCAACAATAATATGAAGATTGACAAAAAAGAAGTTGAAAGATAAATTCAAGAAAGGAAACAMGGAGTAATCCAATGGAAAAATCATTTTGTAAGTTTTCGAATTATCTATGAGTTAAGTAGCGGGGGAATTATTAGGGGAATACTTTTCACATCGCTCGCGCTCTACCGCACCGCCGAAAAGTTTGGTTGGAAGAGTTTGGTTGGCTGGCGGCCGGGGGCCAGCGGCGATATTTTAATTTTAAAACTATTTTTGATCTAGTTTCTTCAATAACACTTCATTTTTCATAGTTTTTCTACGGAAATAAAGTGTTATTGAAAAAAAATAGATCAAAAATTGTTTTAAAATCAAAATATCGCCGCCGGCCCCGGCCGCCAGCCAACCAAACTTTTTCATTTGGGCGGTGCGGTAGAGCGCGAGCGATGTGAAAAGTATTTCCCTAATATCTATGAGTTAAGCAATTCATTCGAATTCATTAAAGTTACTATTTTTATCAATTTCGGTTCATCGAAACGGTTTTGGGAATAAATGCATCAAACATAATTAAATAAAAATTAAATAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>161 136 103 95 89 88 69 61 43 36 36 32 21 21 7 2</canonical_bands>
                <polymorphic_bands>177 161 136 103 95 69 61 43 36 36 32 21 21 7 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGATCGTACGGTTGATAGC</pcr_primer_p1>
		<pcr_primer_p2>GATGTGAAAAGTATTCCCCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAGATCGTACGGTTGATAGCCTCTCCCACCGGAACTTCCTTGAAGATCCTGGCTAGACATGGTGGCGTCTGCAAAAAAGAAATCATTAGAATCAACAATAATATGAAGATTGACAAAAAAGAAGTTGAAAGATAAATTCAAGAAAGGAAACACGGAGTAATCCAATGGAAAAATCATTTTGTAAGTTTTCGAATTATCTATGAGTTAAGTAGCGGGGGAATTATTAGGGGAATACTTTTCACATC</canonical_amplicon>
		<polymorphic_amplicon>AGAGATCGTACGGTTGATAGCCTCTCCCACCGGAACTTCCTTGAAGATCCTGGCTAGACATGGTGGCGTCTGCAAAAAAGAAATCATTAGAATCAACAATAATATGAAGATTGACAAAAAAGAAGTTGAAAGATAAATTCAAGAAAGGAAACAMGGAGTAATCCAATGGAAAAATCATTTTGTAAGTTTTCGAATTATCTATGAGTTAAGTAGCGGGGGAATTATTAGGGGAATACTTTTCACATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21632</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>761590</contig_pos>
        <strand>+</strand>
        <context>AGCCTCTCCC[A/G]CCGGAACTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAGGCCTCTGTTGTCGTTGCGAGAGATCGTACGGTTGATAGCCTCTCCC</left_flank>
        <right_flank>CCGGAACTTCCTTGAAGATCCTGGCTAGACATGGTGGCGTCTGCAAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTGAGCAAATTTCCCTGATTGTAGGCTTTTTGCCCACCGGTTGAGCGTCCTTGATCCCATGATTTAATGTCAAAAAACGATCTAACTTTTGAAAAGAAGCGTCTTTGTTCCTACCACTCTCCTCTTCTCACATGCTATTTCCAATTCAAGGTTGCCCCCTGTCCCTTGAAACACAGATGGTTTCTTACAGATTTTTTACTTTTCCATTAATTCATGTCTTCTACTTTTTCCTCACTAACCTTTTCAAAATCCGCTTTCAATTTGTGCGCCTCGTCAATATATGGCTTTTTATCCTCGTCAGTCATACCCTTCCAAACTTCTCCGAGCTGTTTGCTAATGTCGGACGGCTTCATTCCTGGCTGACCTTTCATCAATTCGCCTCTGCGCTTCTGACAAAACAGCAAAAATGGGTTCATTGGCCGTTTCACACGATCTGCTGAATCCTGACTAGGCCTCTGTTGTCGTTGCGAGAGATCGTACGGTTGATAGCCTCTCCCACCGGAACTTCCTTGAAGATCCTGGCTAGACATGGTGGCGTCTGCAAAAAAGAAATCATTAGAATCAACAATAATATGAAGATTGACAAAAAAGAAGTTGAAAGATAAATTCAAGAAAGGAAACACGGAGTAATCCAATGGAAAAATCATTTTGTAAGTTTTCGAATTATCTATGAGTTAAGTAGCGGGGGAATTATTAGGGGAATACTTTTCACATCGCTCGCGCTCTACCGCACCGCCGAAAAGTTTGGTTGGAAGAGTTTGGTTGGCTGGCGGCCGGGGGCCAGCGGCGATATTTTAATTTTAAAACTATTTTTGATCTAGTTTCTTCAATAACACTTCATTTTTCATAGTTTTTCTACGGAAATAAAGTGTTATTGAAAAAAAATAGATCAAAAATTGTTTTAAAATCAAAATATCGCCGCCGGCCCCGGCCGCCAGCCAACCAAACTTTTTCATTTGGGCGGTGCGGTAGAGCGCGAGCGATGTGAAAAGTATTTC</canonical>
            <polymorphic>GGTTGAGCAAATTTCCCTGATTGTAGGCTTTTTGCCCACCGGTTGAGCGTCCTTGATCCCATGATTTAATGTCAAAAAACGATCTAACTTTTGAAAAGAAGCGTCTTTGTTCCTACCACTCTCCTCTTCTCACATGCTATTTCCAATTCAAGGTTGCCCCCTGTCCCTTGAAACACAGATGGTTTCTTACAGATTTTTTACTTTTCCATTAATTCATGTCTTCTACTTTTTCCTCACTAACCTTTTCAAAATCCGCTTTCAATTTGTGCGCCTCGTCAATATATGGCTTTTTATCCTCGTCAGTCATACCCTTCCAAACTTCTCCGAGCTGTTTGCTAATGTCGGACGGCTTCATTCCTGGCTGACCTTTCATCAATTCGCCTCTGCGCTTCTGACAAAACAGCAAAAATGGGTTCATTGGCCGTTTCACACGATCTGCTGAATCCTGACTAGGCCTCTGTTGTCGTTGCGAGAGATCGTACGGTTGATAGCCTCTCCCRCCGGAACTTCCTTGAAGATCCTGGCTAGACATGGTGGCGTCTGCAAAAAAGAAATCATTAGAATCAACAATAATATGAAGATTGACAAAAAAGAAGTTGAAAGATAAATTCAAGAAAGGAAACACGGAGTAATCCAATGGAAAAATCATTTTGTAAGTTTTCGAATTATCTATGAGTTAAGTAGCGGGGGAATTATTAGGGGAATACTTTTCACATCGCTCGCGCTCTACCGCACCGCCGAAAAGTTTGGTTGGAAGAGTTTGGTTGGCTGGCGGCCGGGGGCCAGCGGCGATATTTTAATTTTAAAACTATTTTTGATCTAGTTTCTTCAATAACACTTCATTTTTCATAGTTTTTCTACGGAAATAAAGTGTTATTGAAAAAAAATAGATCAAAAATTGTTTTAAAATCAAAATATCGCCGCCGGCCCCGGCCGCCAGCCAACCAAACTTTTTCATTTGGGCGGTGCGGTAGAGCGCGAGCGATGTGAAAAGTATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>500 462 38</canonical_bands>
                <polymorphic_bands>962 38</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>161 103 95 89 88 80 69 61 43 38 36 36 32 21 21 14 11 2</canonical_bands>
                <polymorphic_bands>161 105 103 95 89 88 80 61 43 38 36 32 21 21 14 11 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCTGACAAAACAGCAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCCTTTCTTGAATTTATCTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>CTTCTGACAAAACAGCAAAAATGGGTTCATTGGCCGTTTCACACGATCTGCTGAATCCTGACTAGGCCTCTGTTGTCGTTGCGAGAGATCGTACGGTTGATAGCCTCTCCCACCGGAACTTCCTTGAAGATCCTGGCTAGACATGGTGGCGTCTGCAAAAAAGAAATCATTAGAATCAACAATAATATGAAGATTGACAAAAAAGAAGTTGAAAGATAAATTCAAGAAAGGA</canonical_amplicon>
		<polymorphic_amplicon>CTTCTGACAAAACAGCAAAAATGGGTTCATTGGCCGTTTCACACGATCTGCTGAATCCTGACTAGGCCTCTGTTGTCGTTGCGAGAGATCGTACGGTTGATAGCCTCTCCCRCCGGAACTTCCTTGAAGATCCTGGCTAGACATGGTGGCGTCTGCAAAAAAGAAATCATTAGAATCAACAATAATATGAAGATTGACAAAAAAGAAGTTGAAAGATAAATTCAAGAAAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21633</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>761416</contig_pos>
        <strand>+</strand>
        <context>AAACTTCTCC[A/G]AGCTGTTTGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAATATATGGCTTTTTATCCTCGTCAGTCATACCCTTCCAAACTTCTCC</left_flank>
        <right_flank>AGCTGTTTGCTAATGTCGGACGGCTTCATTCCTGGCTGACCTTTCATCAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTAGACATCAATTTTGGCAGATTGCATAGATGCGAGAGTCTAGCAAGGTTTGCGAATGGTTCTGATAGAAGAATGGCAAAACTAAACCGTCGCGTGCCCTCATTTTTCGCGACAATCTAGCGCCTCCAGGCGTCGTATTTTGGGATATGAATTGTGCGAGGGATAAGGCATGGGTTGAGCAAATTTCCCTGATTGTAGGCTTTTTGCCCACCGGTTGAGCGTCCTTGATCCCATGATTTAATGTCAAAAAACGATCTAACTTTTGAAAAGAAGCGTCTTTGTTCCTACCACTCTCCTCTTCTCACATGCTATTTCCAATTCAAGGTTGCCCCCTGTCCCTTGAAACACAGATGGTTTCTTACAGATTTTTTACTTTTCCATTAATTCATGTCTTCTACTTTTTCCTCACTAACCTTTTCAAAATCCGCTTTCAATTTGTGCGCCTCGTCAATATATGGCTTTTTATCCTCGTCAGTCATACCCTTCCAAACTTCTCCGAGCTGTTTGCTAATGTCGGACGGCTTCATTCCTGGCTGACCTTTCATCAATTCGCCTCTGCGCTTCTGACAAAACAGCAAAAATGGGTTCATTGGCCGTTTCACACGATCTGCTGAATCCTGACTAGGCCTCTGTTGTCGTTGCGAGAGATCGTACGGTTGATAGCCTCTCCCACCGGAACTTCCTTGAAGATCCTGGCTAGACATGGTGGCGTCTGCAAAAAAGAAATCATTAGAATCAACAATAATATGAAGATTGACAAAAAAGAAGTTGAAAGATAAATTCAAGAAAGGAAACACGGAGTAATCCAATGGAAAAATCATTTTGTAAGTTTTCGAATTATCTATGAGTTAAGTAGCGGGGGAATTATTAGGGGAATACTTTTCACATCGCTCGCGCTCTACCGCACCGCCGAAAAGTTTGGTTGGAAGAGTTTGGTTGGCTGGCGGCCGGGGGCCAGCGGCGATATTTTAATTTTAAAACTATTTTTGATCTAGTTT</canonical>
            <polymorphic>AGTTAGACATCAATTTTGGCAGATTGCATAGATGCGAGAGTCTAGCAAGGTTTGCGAATGGTTCTGATAGAAGAATGGCAAAACTAAACCGTCGCGTGCCCTCATTTTTCGCGACAATCTAGCGCCTCCAGGCGTCGTATTTTGGGATATGAATTGTGCGAGGGATAAGGCATGGGTTGAGCAAATTTCCCTGATTGTAGGCTTTTTGCCCACCGGTTGAGCGTCCTTGATCCCATGATTTAATGTCAAAAAACGATCTAACTTTTGAAAAGAAGCGTCTTTGTTCCTACCACTCTCCTCTTCTCACATGCTATTTCCAATTCAAGGTTGCCCCCTGTCCCTTGAAACACAGATGGTTTCTTACAGATTTTTTACTTTTCCATTAATTCATGTCTTCTACTTTTTCCTCACTAACCTTTTCAAAATCCGCTTTCAATTTGTGCGCCTCGTCAATATATGGCTTTTTATCCTCGTCAGTCATACCCTTCCAAACTTCTCCRAGCTGTTTGCTAATGTCGGACGGCTTCATTCCTGGCTGACCTTTCATCAATTCGCCTCTGCGCTTCTGACAAAACAGCAAAAATGGGTTCATTGGCCGTTTCACACGATCTGCTGAATCCTGACTAGGCCTCTGTTGTCGTTGCGAGAGATCGTACGGTTGATAGCCTCTCCCACCGGAACTTCCTTGAAGATCCTGGCTAGACATGGTGGCGTCTGCAAAAAAGAAATCATTAGAATCAACAATAATATGAAGATTGACAAAAAAGAAGTTGAAAGATAAATTCAAGAAAGGAAACACGGAGTAATCCAATGGAAAAATCATTTTGTAAGTTTTCGAATTATCTATGAGTTAAGTAGCGGGGGAATTATTAGGGGAATACTTTTCACATCGCTCGCGCTCTACCGCACCGCCGAAAAGTTTGGTTGGAAGAGTTTGGTTGGCTGGCGGCCGGGGGCCAGCGGCGATATTTTAATTTTAAAACTATTTTTGATCTAGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>434 433 65 49 19</canonical_bands>
                <polymorphic_bands>453 433 65 49</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCATGTCTTCTACTTTTTCCTC</pcr_primer_p1>
		<pcr_primer_p2>AACAGAGGCCTAGTCAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCATGTCTTCTACTTTTTCCTCACTAACCTTTTCAAAATCCGCTTTCAATTTGTGCGCCTCGTCAATATATGGCTTTTTATCCTCGTCAGTCATACCCTTCCAAACTTCTCCGAGCTGTTTGCTAATGTCGGACGGCTTCATTCCTGGCTGACCTTTCATCAATTCGCCTCTGCGCTTCTGACAAAACAGCAAAAATGGGTTCATTGGCCGTTTCACACGATCTGCTGAATCCTGACTAGGCCTCTGTT</canonical_amplicon>
		<polymorphic_amplicon>TTCATGTCTTCTACTTTTTCCTCACTAACCTTTTCAAAATCCGCTTTCAATTTGTGCGCCTCGTCAATATATGGCTTTTTATCCTCGTCAGTCATACCCTTCCAAACTTCTCCRAGCTGTTTGCTAATGTCGGACGGCTTCATTCCTGGCTGACCTTTCATCAATTCGCCTCTGCGCTTCTGACAAAACAGCAAAAATGGGTTCATTGGCCGTTTCACACGATCTGCTGAATCCTGACTAGGCCTCTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21634</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>767551</contig_pos>
        <strand></strand>
        <context>AATCTCAAAA[A/T]GTAAGTGATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACACAAAAAACTGCAAAAATTGCACATTTTCATTGAAAAAATCTCAAAA</left_flank>
        <right_flank>GTAAGTGATAATGTTTGTCAACAGCATATTCGCCGATATATAATGGGAAG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCGTCTTGAAGCTGTTTTTCCGTCTTGCGACCGCTTTTTCGAACCTCGTAGAAATCGGTGATCTTCCATTGATTTTCGTCACGAGGCTTCCTGCAGGACGAGAAACTATACAATTCGAGCAAACGAGCTAATATTTCGTTTTATTTTTTCATTTCAAAAGGGCATGACTTTTGCGGAATTCCTAATTCATATGTTTTGACTAAATCGAAATACCTGATTTTCTTAGGAGCCATATTGGGAACCACATTGTTCTCTCCGTCTCCGGTGATCGACGTGGCACTCTTCTTTGGTGCTCGCTTGGTCTTTTTCGTGAATGGACATCCTCTTGCCATGGTTCAGCTTCGCGGGTACCCTACAAGCTGTAAACTTTAAATATACATGTTATATTAAAGAAGTAGGAAGTTTAACGACAAGACTAATCATTCCAAAAGTCTTTCAAAAATGGTAAACACAAAAAACTGCAAAAATTGCACATTTTCATTGAAAAAATCTCAAAAAGTAAGTGATAATGTTTGTCAACAGCATATTCGCCGATATATAATGGGAAGACAAGAGGGGAAAAAGAGTAAAATAGTGCGTTTGGCACACGCGACGCGATGCCCTCGCTGTCCTATGTTGCAAAAAAAGGGCGATGGCAGAAGGAATTACATAAGAAGAGGAGAAAAAGTGTGTGGTCAGAGAAGTGTTCGAGATGACCGAGTGAACCGCTGTTTAGACTTGTTTGTGAGGATCAATGTAATCCTCTGGTTTTGCCCTGCAAAGATAAACGTAATGAGATAAATTGAAATAGTTTGGCCACAGTTCAAGGTTTTCCCCGACACACAATCTCGAAAAACGAGAATTCATTTCTTTTTTGTCCGGACATCGTTCAGAACTATCAAATTTTTGAAGGGTTTTACACATTTTTTTGCATATCTCATGTTTCTTCCCTCTGATACTTTTTCCTGAGAAGTGCTCAAACGTAGTTGTTTTTCATTTCTTGAAATGTGGTGACACCT</canonical>
            <polymorphic>CTTCGTCTTGAAGCTGTTTTTCCGTCTTGCGACCGCTTTTTCGAACCTCGTAGAAATCGGTGATCTTCCATTGATTTTCGTCACGAGGCTTCCTGCAGGACGAGAAACTATACAATTCGAGCAAACGAGCTAATATTTCGTTTTATTTTTTCATTTCAAAAGGGCATGACTTTTGCGGAATTCCTAATTCATATGTTTTGACTAAATCGAAATACCTGATTTTCTTAGGAGCCATATTGGGAACCACATTGTTCTCTCCGTCTCCGGTGATCGACGTGGCACTCTTCTTTGGTGCTCGCTTGGTCTTTTTCGTGAATGGACATCCTCTTGCCATGGTTCAGCTTCGCGGGTACCCTACAAGCTGTAAACTTTAAATATACATGTTATATTAAAGAAGTAGGAAGTTTAACGACAAGACTAATCATTCCAAAAGTCTTTCAAAAATGGTAAACACAAAAAACTGCAAAAATTGCACATTTTCATTGAAAAAATCTCAAAAWGTAAGTGATAATGTTTGTCAACAGCATATTCGCCGATATATAATGGGAAGACAAGAGGGGAAAAAGAGTAAAATAGTGCGTTTGGCACACGCGACGCGATGCCCTCGCTGTCCTATGTTGCAAAAAAAGGGCGATGGCAGAAGGAATTACATAAGAAGAGGAGAAAAAGTGTGTGGTCAGAGAAGTGTTCGAGATGACCGAGTGAACCGCTGTTTAGACTTGTTTGTGAGGATCAATGTAATCCTCTGGTTTTGCCCTGCAAAGATAAACGTAATGAGATAAATTGAAATAGTTTGGCCACAGTTCAAGGTTTTCCCCGACACACAATCTCGAAAAACGAGAATTCATTTCTTTTTTGTCCGGACATCGTTCAGAACTATCAAATTTTTGAAGGGTTTTACACATTTTTTTGCATATCTCATGTTTCTTCCCTCTGATACTTTTTCCTGAGAAGTGCTCAAACGTAGTTGTTTTTCATTTCTTGAAATGTGGTGACACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGACTAATCATTCCAAAAGTC</pcr_primer_p1>
		<pcr_primer_p2>TCCTCTTCTTATGTAATTCCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAGACTAATCATTCCAAAAGTCTTTCAAAAATGGTAAACACAAAAAACTGCAAAAATTGCACATTTTCATTGAAAAAATCTCAAAAAGTAAGTGATAATGTTTGTCAACAGCATATTCGCCGATATATAATGGGAAGACAAGAGGGGAAAAAGAGTAAAATAGTGCGTTTGGCACACGCGACGCGATGCCCTCGCTGTCCTATGTTGCAAAAAAAGGGCGATGGCAGAAGGAATTACATAAGAAGAGGA</canonical_amplicon>
		<polymorphic_amplicon>CAAGACTAATCATTCCAAAAGTCTTTCAAAAATGGTAAACACAAAAAACTGCAAAAATTGCACATTTTCATTGAAAAAATCTCAAAAWGTAAGTGATAATGTTTGTCAACAGCATATTCGCCGATATATAATGGGAAGACAAGAGGGGAAAAAGAGTAAAATAGTGCGTTTGGCACACGCGACGCGATGCCCTCGCTGTCCTATGTTGCAAAAAAAGGGCGATGGCAGAAGGAATTACATAAGAAGAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21636</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>767718</contig_pos>
        <strand></strand>
        <context>AGAGGAGAAA[A/T]AGTGTGTGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTGCAAAAAAAGGGCGATGGCAGAAGGAATTACATAAGAAGAGGAGAAA</left_flank>
        <right_flank>AGTGTGTGGTCAGAGAAGTGTTCGAGATGACCGAGTGAACCGCTGTTTAG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTTTTGCGGAATTCCTAATTCATATGTTTTGACTAAATCGAAATACCTGATTTTCTTAGGAGCCATATTGGGAACCACATTGTTCTCTCCGTCTCCGGTGATCGACGTGGCACTCTTCTTTGGTGCTCGCTTGGTCTTTTTCGTGAATGGACATCCTCTTGCCATGGTTCAGCTTCGCGGGTACCCTACAAGCTGTAAACTTTAAATATACATGTTATATTAAAGAAGTAGGAAGTTTAACGACAAGACTAATCATTCCAAAAGTCTTTCAAAAATGGTAAACACAAAAAACTGCAAAAATTGCACATTTTCATTGAAAAAATCTCAAAAAGTAAGTGATAATGTTTGTCAACAGCATATTCGCCGATATATAATGGGAAGACAAGAGGGGAAAAAGAGTAAAATAGTGCGTTTGGCACACGCGACGCGATGCCCTCGCTGTCCTATGTTGCAAAAAAAGGGCGATGGCAGAAGGAATTACATAAGAAGAGGAGAAAAAGTGTGTGGTCAGAGAAGTGTTCGAGATGACCGAGTGAACCGCTGTTTAGACTTGTTTGTGAGGATCAATGTAATCCTCTGGTTTTGCCCTGCAAAGATAAACGTAATGAGATAAATTGAAATAGTTTGGCCACAGTTCAAGGTTTTCCCCGACACACAATCTCGAAAAACGAGAATTCATTTCTTTTTTGTCCGGACATCGTTCAGAACTATCAAATTTTTGAAGGGTTTTACACATTTTTTTGCATATCTCATGTTTCTTCCCTCTGATACTTTTTCCTGAGAAGTGCTCAAACGTAGTTGTTTTTCATTTCTTGAAATGTGGTGACACCTGTTACACTTTTCTGCAGTTCCCGCCTATTTCTTGAACTTGACTTCTGACCATACTTGTAATCCGGGCCTTTTCCGGTCCTTCGCGGGCCCTGGCATAGTTTCTCTCAGAGTCAATATTTTTGTAAAATGATACTATTCGATAAACTGTATCTTGTTTATAAACATGT</canonical>
            <polymorphic>GACTTTTGCGGAATTCCTAATTCATATGTTTTGACTAAATCGAAATACCTGATTTTCTTAGGAGCCATATTGGGAACCACATTGTTCTCTCCGTCTCCGGTGATCGACGTGGCACTCTTCTTTGGTGCTCGCTTGGTCTTTTTCGTGAATGGACATCCTCTTGCCATGGTTCAGCTTCGCGGGTACCCTACAAGCTGTAAACTTTAAATATACATGTTATATTAAAGAAGTAGGAAGTTTAACGACAAGACTAATCATTCCAAAAGTCTTTCAAAAATGGTAAACACAAAAAACTGCAAAAATTGCACATTTTCATTGAAAAAATCTCAAAAAGTAAGTGATAATGTTTGTCAACAGCATATTCGCCGATATATAATGGGAAGACAAGAGGGGAAAAAGAGTAAAATAGTGCGTTTGGCACACGCGACGCGATGCCCTCGCTGTCCTATGTTGCAAAAAAAGGGCGATGGCAGAAGGAATTACATAAGAAGAGGAGAAAWAGTGTGTGGTCAGAGAAGTGTTCGAGATGACCGAGTGAACCGCTGTTTAGACTTGTTTGTGAGGATCAATGTAATCCTCTGGTTTTGCCCTGCAAAGATAAACGTAATGAGATAAATTGAAATAGTTTGGCCACAGTTCAAGGTTTTCCCCGACACACAATCTCGAAAAACGAGAATTCATTTCTTTTTTGTCCGGACATCGTTCAGAACTATCAAATTTTTGAAGGGTTTTACACATTTTTTTGCATATCTCATGTTTCTTCCCTCTGATACTTTTTCCTGAGAAGTGCTCAAACGTAGTTGTTTTTCATTTCTTGAAATGTGGTGACACCTGTTACACTTTTCTGCAGTTCCCGCCTATTTCTTGAACTTGACTTCTGACCATACTTGTAATCCGGGCCTTTTCCGGTCCTTCGCGGGCCCTGGCATAGTTTCTCTCAGAGTCAATATTTTTGTAAAATGATACTATTCGATAAACTGTATCTTGTTTATAAACATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTGATAATGTTTGTCAACAGC</pcr_primer_p1>
		<pcr_primer_p2>ATCCTCACAAACAAGTCTAAACA</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>AAGTGATAATGTTTGTCAACAGCATATTCGCCGATATATAATGGGAAGACAAGAGGGGAAAAAGAGTAAAATAGTGCGTTTGGCACACGCGACGCGATGCCCTCGCTGTCCTATGTTGCAAAAAAAGGGCGATGGCAGAAGGAATTACATAAGAAGAGGAGAAAAAGTGTGTGGTCAGAGAAGTGTTCGAGATGACCGAGTGAACCGCTGTTTAGACTTGTTTGTGAGGAT</canonical_amplicon>
		<polymorphic_amplicon>AAGTGATAATGTTTGTCAACAGCATATTCGCCGATATATAATGGGAAGACAAGAGGGGAAAAAGAGTAAAATAGTGCGTTTGGCACACGCGACGCGATGCCCTCGCTGTCCTATGTTGCAAAAAAAGGGCGATGGCAGAAGGAATTACATAAGAAGAGGAGAAAWAGTGTGTGGTCAGAGAAGTGTTCGAGATGACCGAGTGAACCGCTGTTTAGACTTGTTTGTGAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21637</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>767736</contig_pos>
        <strand></strand>
        <context>GGTCAGAGAA[G/A]TGTTCGAGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGGCAGAAGGAATTACATAAGAAGAGGAGAAAAAGTGTGTGGTCAGAGAA</left_flank>
        <right_flank>TGTTCGAGATGACCGAGTGAACCGCTGTTTAGACTTGTTTGTGAGGATCA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTCATATGTTTTGACTAAATCGAAATACCTGATTTTCTTAGGAGCCATATTGGGAACCACATTGTTCTCTCCGTCTCCGGTGATCGACGTGGCACTCTTCTTTGGTGCTCGCTTGGTCTTTTTCGTGAATGGACATCCTCTTGCCATGGTTCAGCTTCGCGGGTACCCTACAAGCTGTAAACTTTAAATATACATGTTATATTAAAGAAGTAGGAAGTTTAACGACAAGACTAATCATTCCAAAAGTCTTTCAAAAATGGTAAACACAAAAAACTGCAAAAATTGCACATTTTCATTGAAAAAATCTCAAAAAGTAAGTGATAATGTTTGTCAACAGCATATTCGCCGATATATAATGGGAAGACAAGAGGGGAAAAAGAGTAAAATAGTGCGTTTGGCACACGCGACGCGATGCCCTCGCTGTCCTATGTTGCAAAAAAAGGGCGATGGCAGAAGGAATTACATAAGAAGAGGAGAAAAAGTGTGTGGTCAGAGAAGTGTTCGAGATGACCGAGTGAACCGCTGTTTAGACTTGTTTGTGAGGATCAATGTAATCCTCTGGTTTTGCCCTGCAAAGATAAACGTAATGAGATAAATTGAAATAGTTTGGCCACAGTTCAAGGTTTTCCCCGACACACAATCTCGAAAAACGAGAATTCATTTCTTTTTTGTCCGGACATCGTTCAGAACTATCAAATTTTTGAAGGGTTTTACACATTTTTTTGCATATCTCATGTTTCTTCCCTCTGATACTTTTTCCTGAGAAGTGCTCAAACGTAGTTGTTTTTCATTTCTTGAAATGTGGTGACACCTGTTACACTTTTCTGCAGTTCCCGCCTATTTCTTGAACTTGACTTCTGACCATACTTGTAATCCGGGCCTTTTCCGGTCCTTCGCGGGCCCTGGCATAGTTTCTCTCAGAGTCAATATTTTTGTAAAATGATACTATTCGATAAACTGTATCTTGTTTATAAACATGTTACAAACAAAAAAGTACG</canonical>
            <polymorphic>AATTCATATGTTTTGACTAAATCGAAATACCTGATTTTCTTAGGAGCCATATTGGGAACCACATTGTTCTCTCCGTCTCCGGTGATCGACGTGGCACTCTTCTTTGGTGCTCGCTTGGTCTTTTTCGTGAATGGACATCCTCTTGCCATGGTTCAGCTTCGCGGGTACCCTACAAGCTGTAAACTTTAAATATACATGTTATATTAAAGAAGTAGGAAGTTTAACGACAAGACTAATCATTCCAAAAGTCTTTCAAAAATGGTAAACACAAAAAACTGCAAAAATTGCACATTTTCATTGAAAAAATCTCAAAAAGTAAGTGATAATGTTTGTCAACAGCATATTCGCCGATATATAATGGGAAGACAAGAGGGGAAAAAGAGTAAAATAGTGCGTTTGGCACACGCGACGCGATGCCCTCGCTGTCCTATGTTGCAAAAAAAGGGCGATGGCAGAAGGAATTACATAAGAAGAGGAGAAAAAGTGTGTGGTCAGAGAARTGTTCGAGATGACCGAGTGAACCGCTGTTTAGACTTGTTTGTGAGGATCAATGTAATCCTCTGGTTTTGCCCTGCAAAGATAAACGTAATGAGATAAATTGAAATAGTTTGGCCACAGTTCAAGGTTTTCCCCGACACACAATCTCGAAAAACGAGAATTCATTTCTTTTTTGTCCGGACATCGTTCAGAACTATCAAATTTTTGAAGGGTTTTACACATTTTTTTGCATATCTCATGTTTCTTCCCTCTGATACTTTTTCCTGAGAAGTGCTCAAACGTAGTTGTTTTTCATTTCTTGAAATGTGGTGACACCTGTTACACTTTTCTGCAGTTCCCGCCTATTTCTTGAACTTGACTTCTGACCATACTTGTAATCCGGGCCTTTTCCGGTCCTTCGCGGGCCCTGGCATAGTTTCTCTCAGAGTCAATATTTTTGTAAAATGATACTATTCGATAAACTGTATCTTGTTTATAAACATGTTACAAACAAAAAAGTACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>179 139 82 78 72 71 61 54 35 33 24 23 22 21 20 17 13 12 9 9 9 3 3 3 2 2 2 2</canonical_bands>
                <polymorphic_bands>179 139 82 78 72 71 61 54 35 33 29 24 23 22 21 20 13 9 9 9 3 3 3 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGGCAGAAGGAATTACATAAG</pcr_primer_p1>
		<pcr_primer_p2>CCCTTCAAAAATTTGATAGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>ATGGCAGAAGGAATTACATAAGAAGAGGAGAAAAAGTGTGTGGTCAGAGAAGTGTTCGAGATGACCGAGTGAACCGCTGTTTAGACTTGTTTGTGAGGATCAATGTAATCCTCTGGTTTTGCCCTGCAAAGATAAACGTAATGAGATAAATTGAAATAGTTTGGCCACAGTTCAAGGTTTTCCCCGACACACAATCTCGAAAAACGAGAATTCATTTCTTTTTTGTCCGGACATCGTTCAGAACTATCAAATTTTTGAAGGG</canonical_amplicon>
		<polymorphic_amplicon>ATGGCAGAAGGAATTACATAAGAAGAGGAGAAAAAGTGTGTGGTCAGAGAARTGTTCGAGATGACCGAGTGAACCGCTGTTTAGACTTGTTTGTGAGGATCAATGTAATCCTCTGGTTTTGCCCTGCAAAGATAAACGTAATGAGATAAATTGAAATAGTTTGGCCACAGTTCAAGGTTTTCCCCGACACACAATCTCGAAAAACGAGAATTCATTTCTTTTTTGTCCGGACATCGTTCAGAACTATCAAATTTTTGAAGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21638</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>767786</contig_pos>
        <strand></strand>
        <context>TGTGAGGATC[A/G]ATGTAATCCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGTTCGAGATGACCGAGTGAACCGCTGTTTAGACTTGTTTGTGAGGATC</left_flank>
        <right_flank>ATGTAATCCTCTGGTTTTGCCCTGCAAAGATAAACGTAATGAGATAAATT</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGGGAACCACATTGTTCTCTCCGTCTCCGGTGATCGACGTGGCACTCTTCTTTGGTGCTCGCTTGGTCTTTTTCGTGAATGGACATCCTCTTGCCATGGTTCAGCTTCGCGGGTACCCTACAAGCTGTAAACTTTAAATATACATGTTATATTAAAGAAGTAGGAAGTTTAACGACAAGACTAATCATTCCAAAAGTCTTTCAAAAATGGTAAACACAAAAAACTGCAAAAATTGCACATTTTCATTGAAAAAATCTCAAAAAGTAAGTGATAATGTTTGTCAACAGCATATTCGCCGATATATAATGGGAAGACAAGAGGGGAAAAAGAGTAAAATAGTGCGTTTGGCACACGCGACGCGATGCCCTCGCTGTCCTATGTTGCAAAAAAAGGGCGATGGCAGAAGGAATTACATAAGAAGAGGAGAAAAAGTGTGTGGTCAGAGAAGTGTTCGAGATGACCGAGTGAACCGCTGTTTAGACTTGTTTGTGAGGATCAATGTAATCCTCTGGTTTTGCCCTGCAAAGATAAACGTAATGAGATAAATTGAAATAGTTTGGCCACAGTTCAAGGTTTTCCCCGACACACAATCTCGAAAAACGAGAATTCATTTCTTTTTTGTCCGGACATCGTTCAGAACTATCAAATTTTTGAAGGGTTTTACACATTTTTTTGCATATCTCATGTTTCTTCCCTCTGATACTTTTTCCTGAGAAGTGCTCAAACGTAGTTGTTTTTCATTTCTTGAAATGTGGTGACACCTGTTACACTTTTCTGCAGTTCCCGCCTATTTCTTGAACTTGACTTCTGACCATACTTGTAATCCGGGCCTTTTCCGGTCCTTCGCGGGCCCTGGCATAGTTTCTCTCAGAGTCAATATTTTTGTAAAATGATACTATTCGATAAACTGTATCTTGTTTATAAACATGTTACAAACAAAAAAGTACGAAAAAAAGCAAGCCCGGCCCGGGCTTTCCGGGCCGTCATGGAAAAGCAAC</canonical>
            <polymorphic>ATTGGGAACCACATTGTTCTCTCCGTCTCCGGTGATCGACGTGGCACTCTTCTTTGGTGCTCGCTTGGTCTTTTTCGTGAATGGACATCCTCTTGCCATGGTTCAGCTTCGCGGGTACCCTACAAGCTGTAAACTTTAAATATACATGTTATATTAAAGAAGTAGGAAGTTTAACGACAAGACTAATCATTCCAAAAGTCTTTCAAAAATGGTAAACACAAAAAACTGCAAAAATTGCACATTTTCATTGAAAAAATCTCAAAAAGTAAGTGATAATGTTTGTCAACAGCATATTCGCCGATATATAATGGGAAGACAAGAGGGGAAAAAGAGTAAAATAGTGCGTTTGGCACACGCGACGCGATGCCCTCGCTGTCCTATGTTGCAAAAAAAGGGCGATGGCAGAAGGAATTACATAAGAAGAGGAGAAAAAGTGTGTGGTCAGAGAAGTGTTCGAGATGACCGAGTGAACCGCTGTTTAGACTTGTTTGTGAGGATCRATGTAATCCTCTGGTTTTGCCCTGCAAAGATAAACGTAATGAGATAAATTGAAATAGTTTGGCCACAGTTCAAGGTTTTCCCCGACACACAATCTCGAAAAACGAGAATTCATTTCTTTTTTGTCCGGACATCGTTCAGAACTATCAAATTTTTGAAGGGTTTTACACATTTTTTTGCATATCTCATGTTTCTTCCCTCTGATACTTTTTCCTGAGAAGTGCTCAAACGTAGTTGTTTTTCATTTCTTGAAATGTGGTGACACCTGTTACACTTTTCTGCAGTTCCCGCCTATTTCTTGAACTTGACTTCTGACCATACTTGTAATCCGGGCCTTTTCCGGTCCTTCGCGGGCCCTGGCATAGTTTCTCTCAGAGTCAATATTTTTGTAAAATGATACTATTCGATAAACTGTATCTTGTTTATAAACATGTTACAAACAAAAAAGTACGAAAAAAAGCAAGCCCGGCCCGGGCTTTCCGGGCCGTCATGGAAAAGCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAATTACATAAGAAGAGGAGAAA</pcr_primer_p1>
		<pcr_primer_p2>CCCTTCAAAAATTTGATAGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GGAATTACATAAGAAGAGGAGAAAAAGTGTGTGGTCAGAGAAGTGTTCGAGATGACCGAGTGAACCGCTGTTTAGACTTGTTTGTGAGGATCAATGTAATCCTCTGGTTTTGCCCTGCAAAGATAAACGTAATGAGATAAATTGAAATAGTTTGGCCACAGTTCAAGGTTTTCCCCGACACACAATCTCGAAAAACGAGAATTCATTTCTTTTTTGTCCGGACATCGTTCAGAACTATCAAATTTTTGAAGGG</canonical_amplicon>
		<polymorphic_amplicon>GGAATTACATAAGAAGAGGAGAAAAAGTGTGTGGTCAGAGAAGTGTTCGAGATGACCGAGTGAACCGCTGTTTAGACTTGTTTGTGAGGATCRATGTAATCCTCTGGTTTTGCCCTGCAAAGATAAACGTAATGAGATAAATTGAAATAGTTTGGCCACAGTTCAAGGTTTTCCCCGACACACAATCTCGAAAAACGAGAATTCATTTCTTTTTTGTCCGGACATCGTTCAGAACTATCAAATTTTTGAAGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21639</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>767808</contig_pos>
        <strand></strand>
        <context>TGGTTTTGCC[C/A]TGCAAAGATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CCGCTGTTTAGACTTGTTTGTGAGGATCAATGTAATCCTCTGGTTTTGCC</left_flank>
        <right_flank>TGCAAAGATAAACGTAATGAGATAAATTGAAATAGTTTGGCCACAGTTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGTCTCCGGTGATCGACGTGGCACTCTTCTTTGGTGCTCGCTTGGTCTTTTTCGTGAATGGACATCCTCTTGCCATGGTTCAGCTTCGCGGGTACCCTACAAGCTGTAAACTTTAAATATACATGTTATATTAAAGAAGTAGGAAGTTTAACGACAAGACTAATCATTCCAAAAGTCTTTCAAAAATGGTAAACACAAAAAACTGCAAAAATTGCACATTTTCATTGAAAAAATCTCAAAAAGTAAGTGATAATGTTTGTCAACAGCATATTCGCCGATATATAATGGGAAGACAAGAGGGGAAAAAGAGTAAAATAGTGCGTTTGGCACACGCGACGCGATGCCCTCGCTGTCCTATGTTGCAAAAAAAGGGCGATGGCAGAAGGAATTACATAAGAAGAGGAGAAAAAGTGTGTGGTCAGAGAAGTGTTCGAGATGACCGAGTGAACCGCTGTTTAGACTTGTTTGTGAGGATCAATGTAATCCTCTGGTTTTGCCCTGCAAAGATAAACGTAATGAGATAAATTGAAATAGTTTGGCCACAGTTCAAGGTTTTCCCCGACACACAATCTCGAAAAACGAGAATTCATTTCTTTTTTGTCCGGACATCGTTCAGAACTATCAAATTTTTGAAGGGTTTTACACATTTTTTTGCATATCTCATGTTTCTTCCCTCTGATACTTTTTCCTGAGAAGTGCTCAAACGTAGTTGTTTTTCATTTCTTGAAATGTGGTGACACCTGTTACACTTTTCTGCAGTTCCCGCCTATTTCTTGAACTTGACTTCTGACCATACTTGTAATCCGGGCCTTTTCCGGTCCTTCGCGGGCCCTGGCATAGTTTCTCTCAGAGTCAATATTTTTGTAAAATGATACTATTCGATAAACTGTATCTTGTTTATAAACATGTTACAAACAAAAAAGTACGAAAAAAAGCAAGCCCGGCCCGGGCTTTCCGGGCCGTCATGGAAAAGCAACTTGTTNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>CCGTCTCCGGTGATCGACGTGGCACTCTTCTTTGGTGCTCGCTTGGTCTTTTTCGTGAATGGACATCCTCTTGCCATGGTTCAGCTTCGCGGGTACCCTACAAGCTGTAAACTTTAAATATACATGTTATATTAAAGAAGTAGGAAGTTTAACGACAAGACTAATCATTCCAAAAGTCTTTCAAAAATGGTAAACACAAAAAACTGCAAAAATTGCACATTTTCATTGAAAAAATCTCAAAAAGTAAGTGATAATGTTTGTCAACAGCATATTCGCCGATATATAATGGGAAGACAAGAGGGGAAAAAGAGTAAAATAGTGCGTTTGGCACACGCGACGCGATGCCCTCGCTGTCCTATGTTGCAAAAAAAGGGCGATGGCAGAAGGAATTACATAAGAAGAGGAGAAAAAGTGTGTGGTCAGAGAAGTGTTCGAGATGACCGAGTGAACCGCTGTTTAGACTTGTTTGTGAGGATCAATGTAATCCTCTGGTTTTGCCMTGCAAAGATAAACGTAATGAGATAAATTGAAATAGTTTGGCCACAGTTCAAGGTTTTCCCCGACACACAATCTCGAAAAACGAGAATTCATTTCTTTTTTGTCCGGACATCGTTCAGAACTATCAAATTTTTGAAGGGTTTTACACATTTTTTTGCATATCTCATGTTTCTTCCCTCTGATACTTTTTCCTGAGAAGTGCTCAAACGTAGTTGTTTTTCATTTCTTGAAATGTGGTGACACCTGTTACACTTTTCTGCAGTTCCCGCCTATTTCTTGAACTTGACTTCTGACCATACTTGTAATCCGGGCCTTTTCCGGTCCTTCGCGGGCCCTGGCATAGTTTCTCTCAGAGTCAATATTTTTGTAAAATGATACTATTCGATAAACTGTATCTTGTTTATAAACATGTTACAAACAAAAAAGTACGAAAAAAAGCAAGCCCGGCCCGGGCTTTCCGGGCCGTCATGGAAAAGCAACTTGTTNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAATTACATAAGAAGAGGAGAAA</pcr_primer_p1>
		<pcr_primer_p2>CCCTTCAAAAATTTGATAGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GGAATTACATAAGAAGAGGAGAAAAAGTGTGTGGTCAGAGAAGTGTTCGAGATGACCGAGTGAACCGCTGTTTAGACTTGTTTGTGAGGATCAATGTAATCCTCTGGTTTTGCCCTGCAAAGATAAACGTAATGAGATAAATTGAAATAGTTTGGCCACAGTTCAAGGTTTTCCCCGACACACAATCTCGAAAAACGAGAATTCATTTCTTTTTTGTCCGGACATCGTTCAGAACTATCAAATTTTTGAAGGG</canonical_amplicon>
		<polymorphic_amplicon>GGAATTACATAAGAAGAGGAGAAAAAGTGTGTGGTCAGAGAAGTGTTCGAGATGACCGAGTGAACCGCTGTTTAGACTTGTTTGTGAGGATCAATGTAATCCTCTGGTTTTGCCMTGCAAAGATAAACGTAATGAGATAAATTGAAATAGTTTGGCCACAGTTCAAGGTTTTCCCCGACACACAATCTCGAAAAACGAGAATTCATTTCTTTTTTGTCCGGACATCGTTCAGAACTATCAAATTTTTGAAGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21640</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>767832</contig_pos>
        <strand></strand>
        <context>GTAATGAGAT[A/T]AATTGAAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATCAATGTAATCCTCTGGTTTTGCCCTGCAAAGATAAACGTAATGAGAT</left_flank>
        <right_flank>AATTGAAATAGTTTGGCCACAGTTCAAGGTTTTCCCCGACACACAATCTC</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTTCTTTGGTGCTCGCTTGGTCTTTTTCGTGAATGGACATCCTCTTGCCATGGTTCAGCTTCGCGGGTACCCTACAAGCTGTAAACTTTAAATATACATGTTATATTAAAGAAGTAGGAAGTTTAACGACAAGACTAATCATTCCAAAAGTCTTTCAAAAATGGTAAACACAAAAAACTGCAAAAATTGCACATTTTCATTGAAAAAATCTCAAAAAGTAAGTGATAATGTTTGTCAACAGCATATTCGCCGATATATAATGGGAAGACAAGAGGGGAAAAAGAGTAAAATAGTGCGTTTGGCACACGCGACGCGATGCCCTCGCTGTCCTATGTTGCAAAAAAAGGGCGATGGCAGAAGGAATTACATAAGAAGAGGAGAAAAAGTGTGTGGTCAGAGAAGTGTTCGAGATGACCGAGTGAACCGCTGTTTAGACTTGTTTGTGAGGATCAATGTAATCCTCTGGTTTTGCCCTGCAAAGATAAACGTAATGAGATAAATTGAAATAGTTTGGCCACAGTTCAAGGTTTTCCCCGACACACAATCTCGAAAAACGAGAATTCATTTCTTTTTTGTCCGGACATCGTTCAGAACTATCAAATTTTTGAAGGGTTTTACACATTTTTTTGCATATCTCATGTTTCTTCCCTCTGATACTTTTTCCTGAGAAGTGCTCAAACGTAGTTGTTTTTCATTTCTTGAAATGTGGTGACACCTGTTACACTTTTCTGCAGTTCCCGCCTATTTCTTGAACTTGACTTCTGACCATACTTGTAATCCGGGCCTTTTCCGGTCCTTCGCGGGCCCTGGCATAGTTTCTCTCAGAGTCAATATTTTTGTAAAATGATACTATTCGATAAACTGTATCTTGTTTATAAACATGTTACAAACAAAAAAGTACGAAAAAAAGCAAGCCCGGCCCGGGCTTTCCGGGCCGTCATGGAAAAGCAACTTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>CTCTTCTTTGGTGCTCGCTTGGTCTTTTTCGTGAATGGACATCCTCTTGCCATGGTTCAGCTTCGCGGGTACCCTACAAGCTGTAAACTTTAAATATACATGTTATATTAAAGAAGTAGGAAGTTTAACGACAAGACTAATCATTCCAAAAGTCTTTCAAAAATGGTAAACACAAAAAACTGCAAAAATTGCACATTTTCATTGAAAAAATCTCAAAAAGTAAGTGATAATGTTTGTCAACAGCATATTCGCCGATATATAATGGGAAGACAAGAGGGGAAAAAGAGTAAAATAGTGCGTTTGGCACACGCGACGCGATGCCCTCGCTGTCCTATGTTGCAAAAAAAGGGCGATGGCAGAAGGAATTACATAAGAAGAGGAGAAAAAGTGTGTGGTCAGAGAAGTGTTCGAGATGACCGAGTGAACCGCTGTTTAGACTTGTTTGTGAGGATCAATGTAATCCTCTGGTTTTGCCCTGCAAAGATAAACGTAATGAGATWAATTGAAATAGTTTGGCCACAGTTCAAGGTTTTCCCCGACACACAATCTCGAAAAACGAGAATTCATTTCTTTTTTGTCCGGACATCGTTCAGAACTATCAAATTTTTGAAGGGTTTTACACATTTTTTTGCATATCTCATGTTTCTTCCCTCTGATACTTTTTCCTGAGAAGTGCTCAAACGTAGTTGTTTTTCATTTCTTGAAATGTGGTGACACCTGTTACACTTTTCTGCAGTTCCCGCCTATTTCTTGAACTTGACTTCTGACCATACTTGTAATCCGGGCCTTTTCCGGTCCTTCGCGGGCCCTGGCATAGTTTCTCTCAGAGTCAATATTTTTGTAAAATGATACTATTCGATAAACTGTATCTTGTTTATAAACATGTTACAAACAAAAAAGTACGAAAAAAAGCAAGCCCGGCCCGGGCTTTCCGGGCCGTCATGGAAAAGCAACTTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTAGACTTGTTTGTGAGGAT</pcr_primer_p1>
		<pcr_primer_p2>TCTCAGGAAAAAGTATCAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TGTTTAGACTTGTTTGTGAGGATCAATGTAATCCTCTGGTTTTGCCCTGCAAAGATAAACGTAATGAGATAAATTGAAATAGTTTGGCCACAGTTCAAGGTTTTCCCCGACACACAATCTCGAAAAACGAGAATTCATTTCTTTTTTGTCCGGACATCGTTCAGAACTATCAAATTTTTGAAGGGTTTTACACATTTTTTTGCATATCTCATGTTTCTTCCCTCTGATACTTTTTCCTGAGA</canonical_amplicon>
		<polymorphic_amplicon>TGTTTAGACTTGTTTGTGAGGATCAATGTAATCCTCTGGTTTTGCCCTGCAAAGATAAACGTAATGAGATWAATTGAAATAGTTTGGCCACAGTTCAAGGTTTTCCCCGACACACAATCTCGAAAAACGAGAATTCATTTCTTTTTTGTCCGGACATCGTTCAGAACTATCAAATTTTTGAAGGGTTTTACACATTTTTTTGCATATCTCATGTTTCTTCCCTCTGATACTTTTTCCTGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21641</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>767850</contig_pos>
        <strand></strand>
        <context>ATAGTTTGGC[C/G]ACAGTTCAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTTTTGCCCTGCAAAGATAAACGTAATGAGATAAATTGAAATAGTTTGGC</left_flank>
        <right_flank>ACAGTTCAAGGTTTTCCCCGACACACAATCTCGAAAAACGAGAATTCATT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGTCTTTTTCGTGAATGGACATCCTCTTGCCATGGTTCAGCTTCGCGGGTACCCTACAAGCTGTAAACTTTAAATATACATGTTATATTAAAGAAGTAGGAAGTTTAACGACAAGACTAATCATTCCAAAAGTCTTTCAAAAATGGTAAACACAAAAAACTGCAAAAATTGCACATTTTCATTGAAAAAATCTCAAAAAGTAAGTGATAATGTTTGTCAACAGCATATTCGCCGATATATAATGGGAAGACAAGAGGGGAAAAAGAGTAAAATAGTGCGTTTGGCACACGCGACGCGATGCCCTCGCTGTCCTATGTTGCAAAAAAAGGGCGATGGCAGAAGGAATTACATAAGAAGAGGAGAAAAAGTGTGTGGTCAGAGAAGTGTTCGAGATGACCGAGTGAACCGCTGTTTAGACTTGTTTGTGAGGATCAATGTAATCCTCTGGTTTTGCCCTGCAAAGATAAACGTAATGAGATAAATTGAAATAGTTTGGCCACAGTTCAAGGTTTTCCCCGACACACAATCTCGAAAAACGAGAATTCATTTCTTTTTTGTCCGGACATCGTTCAGAACTATCAAATTTTTGAAGGGTTTTACACATTTTTTTGCATATCTCATGTTTCTTCCCTCTGATACTTTTTCCTGAGAAGTGCTCAAACGTAGTTGTTTTTCATTTCTTGAAATGTGGTGACACCTGTTACACTTTTCTGCAGTTCCCGCCTATTTCTTGAACTTGACTTCTGACCATACTTGTAATCCGGGCCTTTTCCGGTCCTTCGCGGGCCCTGGCATAGTTTCTCTCAGAGTCAATATTTTTGTAAAATGATACTATTCGATAAACTGTATCTTGTTTATAAACATGTTACAAACAAAAAAGTACGAAAAAAAGCAAGCCCGGCCCGGGCTTTCCGGGCCGTCATGGAAAAGCAACTTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>TTGGTCTTTTTCGTGAATGGACATCCTCTTGCCATGGTTCAGCTTCGCGGGTACCCTACAAGCTGTAAACTTTAAATATACATGTTATATTAAAGAAGTAGGAAGTTTAACGACAAGACTAATCATTCCAAAAGTCTTTCAAAAATGGTAAACACAAAAAACTGCAAAAATTGCACATTTTCATTGAAAAAATCTCAAAAAGTAAGTGATAATGTTTGTCAACAGCATATTCGCCGATATATAATGGGAAGACAAGAGGGGAAAAAGAGTAAAATAGTGCGTTTGGCACACGCGACGCGATGCCCTCGCTGTCCTATGTTGCAAAAAAAGGGCGATGGCAGAAGGAATTACATAAGAAGAGGAGAAAAAGTGTGTGGTCAGAGAAGTGTTCGAGATGACCGAGTGAACCGCTGTTTAGACTTGTTTGTGAGGATCAATGTAATCCTCTGGTTTTGCCCTGCAAAGATAAACGTAATGAGATAAATTGAAATAGTTTGGCSACAGTTCAAGGTTTTCCCCGACACACAATCTCGAAAAACGAGAATTCATTTCTTTTTTGTCCGGACATCGTTCAGAACTATCAAATTTTTGAAGGGTTTTACACATTTTTTTGCATATCTCATGTTTCTTCCCTCTGATACTTTTTCCTGAGAAGTGCTCAAACGTAGTTGTTTTTCATTTCTTGAAATGTGGTGACACCTGTTACACTTTTCTGCAGTTCCCGCCTATTTCTTGAACTTGACTTCTGACCATACTTGTAATCCGGGCCTTTTCCGGTCCTTCGCGGGCCCTGGCATAGTTTCTCTCAGAGTCAATATTTTTGTAAAATGATACTATTCGATAAACTGTATCTTGTTTATAAACATGTTACAAACAAAAAAGTACGAAAAAAAGCAAGCCCGGCCCGGGCTTTCCGGGCCGTCATGGAAAAGCAACTTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGGCCA</site>
                <isoschizomers>
                    <enzyme>BalI</enzyme>
                    <enzyme>MlsI</enzyme>
                    <enzyme>MluNI</enzyme>
                    <enzyme>MscI</enzyme>
                    <enzyme>Msp20I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>498 269 115 82 21 15</canonical_bands>
                <polymorphic_bands>767 115 82 21 15</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>436 269 110 82 42 21 20 9 6 5</canonical_bands>
                <polymorphic_bands>705 110 82 42 21 20 9 6 5</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>293 139 82 78 72 71 54 35 33 24 22 21 17 15 12 9 9 3 3 2 2 2 2</canonical_bands>
                <polymorphic_bands>293 139 94 82 78 71 54 35 33 24 21 17 15 12 9 9 3 3 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTTAGACTTGTTTGTGAGGAT</pcr_primer_p1>
		<pcr_primer_p2>TCTCAGGAAAAAGTATCAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TGTTTAGACTTGTTTGTGAGGATCAATGTAATCCTCTGGTTTTGCCCTGCAAAGATAAACGTAATGAGATAAATTGAAATAGTTTGGCCACAGTTCAAGGTTTTCCCCGACACACAATCTCGAAAAACGAGAATTCATTTCTTTTTTGTCCGGACATCGTTCAGAACTATCAAATTTTTGAAGGGTTTTACACATTTTTTTGCATATCTCATGTTTCTTCCCTCTGATACTTTTTCCTGAGA</canonical_amplicon>
		<polymorphic_amplicon>TGTTTAGACTTGTTTGTGAGGATCAATGTAATCCTCTGGTTTTGCCCTGCAAAGATAAACGTAATGAGATAAATTGAAATAGTTTGGCSACAGTTCAAGGTTTTCCCCGACACACAATCTCGAAAAACGAGAATTCATTTCTTTTTTGTCCGGACATCGTTCAGAACTATCAAATTTTTGAAGGGTTTTACACATTTTTTTGCATATCTCATGTTTCTTCCCTCTGATACTTTTTCCTGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21642</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>767908</contig_pos>
        <strand></strand>
        <context>ATTTCTTTTT[T/C]GTCCGGACAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAGGTTTTCCCCGACACACAATCTCGAAAAACGAGAATTCATTTCTTTTT</left_flank>
        <right_flank>GTCCGGACATCGTTCAGAACTATCAAATTTTTGAAGGGTTTTACACATTT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGCTGTAAACTTTAAATATACATGTTATATTAAAGAAGTAGGAAGTTTAACGACAAGACTAATCATTCCAAAAGTCTTTCAAAAATGGTAAACACAAAAAACTGCAAAAATTGCACATTTTCATTGAAAAAATCTCAAAAAGTAAGTGATAATGTTTGTCAACAGCATATTCGCCGATATATAATGGGAAGACAAGAGGGGAAAAAGAGTAAAATAGTGCGTTTGGCACACGCGACGCGATGCCCTCGCTGTCCTATGTTGCAAAAAAAGGGCGATGGCAGAAGGAATTACATAAGAAGAGGAGAAAAAGTGTGTGGTCAGAGAAGTGTTCGAGATGACCGAGTGAACCGCTGTTTAGACTTGTTTGTGAGGATCAATGTAATCCTCTGGTTTTGCCCTGCAAAGATAAACGTAATGAGATAAATTGAAATAGTTTGGCCACAGTTCAAGGTTTTCCCCGACACACAATCTCGAAAAACGAGAATTCATTTCTTTTTTGTCCGGACATCGTTCAGAACTATCAAATTTTTGAAGGGTTTTACACATTTTTTTGCATATCTCATGTTTCTTCCCTCTGATACTTTTTCCTGAGAAGTGCTCAAACGTAGTTGTTTTTCATTTCTTGAAATGTGGTGACACCTGTTACACTTTTCTGCAGTTCCCGCCTATTTCTTGAACTTGACTTCTGACCATACTTGTAATCCGGGCCTTTTCCGGTCCTTCGCGGGCCCTGGCATAGTTTCTCTCAGAGTCAATATTTTTGTAAAATGATACTATTCGATAAACTGTATCTTGTTTATAAACATGTTACAAACAAAAAAGTACGAAAAAAAGCAAGCCCGGCCCGGGCTTTCCGGGCCGTCATGGAAAAGCAACTTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>CAAGCTGTAAACTTTAAATATACATGTTATATTAAAGAAGTAGGAAGTTTAACGACAAGACTAATCATTCCAAAAGTCTTTCAAAAATGGTAAACACAAAAAACTGCAAAAATTGCACATTTTCATTGAAAAAATCTCAAAAAGTAAGTGATAATGTTTGTCAACAGCATATTCGCCGATATATAATGGGAAGACAAGAGGGGAAAAAGAGTAAAATAGTGCGTTTGGCACACGCGACGCGATGCCCTCGCTGTCCTATGTTGCAAAAAAAGGGCGATGGCAGAAGGAATTACATAAGAAGAGGAGAAAAAGTGTGTGGTCAGAGAAGTGTTCGAGATGACCGAGTGAACCGCTGTTTAGACTTGTTTGTGAGGATCAATGTAATCCTCTGGTTTTGCCCTGCAAAGATAAACGTAATGAGATAAATTGAAATAGTTTGGCCACAGTTCAAGGTTTTCCCCGACACACAATCTCGAAAAACGAGAATTCATTTCTTTTTYGTCCGGACATCGTTCAGAACTATCAAATTTTTGAAGGGTTTTACACATTTTTTTGCATATCTCATGTTTCTTCCCTCTGATACTTTTTCCTGAGAAGTGCTCAAACGTAGTTGTTTTTCATTTCTTGAAATGTGGTGACACCTGTTACACTTTTCTGCAGTTCCCGCCTATTTCTTGAACTTGACTTCTGACCATACTTGTAATCCGGGCCTTTTCCGGTCCTTCGCGGGCCCTGGCATAGTTTCTCTCAGAGTCAATATTTTTGTAAAATGATACTATTCGATAAACTGTATCTTGTTTATAAACATGTTACAAACAAAAAAGTACGAAAAAAAGCAAGCCCGGCCCGGGCTTTCCGGGCCGTCATGGAAAAGCAACTTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCAAAGATAAACGTAATGAGAT</pcr_primer_p1>
		<pcr_primer_p2>GTGTAACAGGTGTCACCACAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGCAAAGATAAACGTAATGAGATAAATTGAAATAGTTTGGCCACAGTTCAAGGTTTTCCCCGACACACAATCTCGAAAAACGAGAATTCATTTCTTTTTTGTCCGGACATCGTTCAGAACTATCAAATTTTTGAAGGGTTTTACACATTTTTTTGCATATCTCATGTTTCTTCCCTCTGATACTTTTTCCTGAGAAGTGCTCAAACGTAGTTGTTTTTCATTTCTTGAAATGTGGTGACACCTGTTACAC</canonical_amplicon>
		<polymorphic_amplicon>TGCAAAGATAAACGTAATGAGATAAATTGAAATAGTTTGGCCACAGTTCAAGGTTTTCCCCGACACACAATCTCGAAAAACGAGAATTCATTTCTTTTTYGTCCGGACATCGTTCAGAACTATCAAATTTTTGAAGGGTTTTACACATTTTTTTGCATATCTCATGTTTCTTCCCTCTGATACTTTTTCCTGAGAAGTGCTCAAACGTAGTTGTTTTTCATTTCTTGAAATGTGGTGACACCTGTTACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21644</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>776129</contig_pos>
        <strand>+</strand>
        <context>TTTCGAGTTT[A/T]AAAAAACCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCGCGTGGTAGAATTTTTGAATATTCGAAGCTACTGGATATTTCGAGTTT</left_flank>
        <right_flank>AAAAAACCAGAATTTCTAATTCTCGGAATACTCCTGTACAAACTTCAATC</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGCCTATTGAATATTTTAATGGAACAAACTTCGTTTGTTACAGATGTTCAGCTAAATTAAGTTCCGACTCTTAATTCTTTCAAAGTGACTGTCAAAATAAAATATACCTATTTTCTTACAGATTATTTAGGCTTTTTCTCTTCCCAATCTTTTTGAAACAACGTTCTCATTTTCACTCCCATTCCTAGCCCCCCCCCCCCCCCCTTTTCTTCTGTTAAACCCTATCTGTTCTATTTACTCCTTTTCCTTACTAGGCGGCCTCCGCTTTTTTTTTCTTTCTTCCCTCTCGCTTGTTTTGTTTCCCCTCCTCAACCAAATAGAAATGCGAAGGGAATGTGGCCGCGTGGCCTAATGGATAAGGCACCAGACTTCGGATCTGGGGATTGCAGGTTCGAGTCCTGCCGTGGTCGAAATCATTTTGATTTTGTTTGTGAACAATATAAGGGGTGCGCGTGGTAGAATTTTTGAATATTCGAAGCTACTGGATATTTCGAGTTTAAAAAAACCAGAATTTCTAATTCTCGGAATACTCCTGTACAAACTTCAATCCGAAAATTCTCTGAACTTTTAGAATCTTCTGAATTTGGATTCCAGATTTTCGCATACCTCGAGCGATAGTATAAAACTGTTTTTACCCGTTTACCCCAGCTTTATCAAATCCCTAAAAATAAATATTGAACAGTAACATATTATTTACAAATGAAAAAAAATACACTTACATGGAATGACTCCCAAGTGTTACCCTCGAAAAAAATCGAGACCTATATGGTTGGATAGAGCGTAAAAAGTTATTTTAGATTCCAAACGGAATAGTTGGTAAAAATTTTTTTTTTGGGAGTTATGGTCCAAAAAGTACCAAAAAATGCCTAAATTTTCAAAAAATCATAACTTTGTCAGTTTATGTCCGTTTGTTGAAATTTAAAAAAACAATAGATAGACAATTGATTCCACATTTGAGAATAATTTTTTTAAATTTTTTCCTAATGATTGGATTATTGA</canonical>
            <polymorphic>GAGCCTATTGAATATTTTAATGGAACAAACTTCGTTTGTTACAGATGTTCAGCTAAATTAAGTTCCGACTCTTAATTCTTTCAAAGTGACTGTCAAAATAAAATATACCTATTTTCTTACAGATTATTTAGGCTTTTTCTCTTCCCAATCTTTTTGAAACAACGTTCTCATTTTCACTCCCATTCCTAGCCCCCCCCCCCCCCCCTTTTCTTCTGTTAAACCCTATCTGTTCTATTTACTCCTTTTCCTTACTAGGCGGCCTCCGCTTTTTTTTTCTTTCTTCCCTCTCGCTTGTTTTGTTTCCCCTCCTCAACCAAATAGAAATGCGAAGGGAATGTGGCCGCGTGGCCTAATGGATAAGGCACCAGACTTCGGATCTGGGGATTGCAGGTTCGAGTCCTGCCGTGGTCGAAATCATTTTGATTTTGTTTGTGAACAATATAAGGGGTGCGCGTGGTAGAATTTTTGAATATTCGAAGCTACTGGATATTTCGAGTTTWAAAAAACCAGAATTTCTAATTCTCGGAATACTCCTGTACAAACTTCAATCCGAAAATTCTCTGAACTTTTAGAATCTTCTGAATTTGGATTCCAGATTTTCGCATACCTCGAGCGATAGTATAAAACTGTTTTTACCCGTTTACCCCAGCTTTATCAAATCCCTAAAAATAAATATTGAACAGTAACATATTATTTACAAATGAAAAAAAATACACTTACATGGAATGACTCCCAAGTGTTACCCTCGAAAAAAATCGAGACCTATATGGTTGGATAGAGCGTAAAAAGTTATTTTAGATTCCAAACGGAATAGTTGGTAAAAATTTTTTTTTTGGGAGTTATGGTCCAAAAAGTACCAAAAAATGCCTAAATTTTCAAAAAATCATAACTTTGTCAGTTTATGTCCGTTTGTTGAAATTTAAAAAAACAATAGATAGACAATTGATTCCACATTTGAGAATAATTTTTTTAAATTTTTTCCTAATGATTGGATTATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 422 50 29</canonical_bands>
                <polymorphic_bands>921 50 29</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>422 282 144 50 41 30 17 14</canonical_bands>
                <polymorphic_bands>704 144 50 41 30 17 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCATTTTGATTTTGTTTGTGA</pcr_primer_p1>
		<pcr_primer_p2>ATTTGATAAAGCTGGGGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATCATTTTGATTTTGTTTGTGAACAATATAAGGGGTGCGCGTGGTAGAATTTTTGAATATTCGAAGCTACTGGATATTTCGAGTTTAAAAAAACCAGAATTTCTAATTCTCGGAATACTCCTGTACAAACTTCAATCCGAAAATTCTCTGAACTTTTAGAATCTTCTGAATTTGGATTCCAGATTTTCGCATACCTCGAGCGATAGTATAAAACTGTTTTTACCCGTTTACCCCAGCTTTATCAAAT</canonical_amplicon>
		<polymorphic_amplicon>AATCATTTTGATTTTGTTTGTGAACAATATAAGGGGTGCGCGTGGTAGAATTTTTGAATATTCGAAGCTACTGGATATTTCGAGTTTWAAAAAACCAGAATTTCTAATTCTCGGAATACTCCTGTACAAACTTCAATCCGAAAATTCTCTGAACTTTTAGAATCTTCTGAATTTGGATTCCAGATTTTCGCATACCTCGAGCGATAGTATAAAACTGTTTTTACCCGTTTACCCCAGCTTTATCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21646</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>800564</contig_pos>
        <strand>+</strand>
        <context>TGTTTTCTTT[C/T]AGTATAACAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCATTAAACTGGTTCATCTTGGTAAGTGACTTTTCTTTCATGTTTTCTTT</left_flank>
        <right_flank>AGTATAACATCTAAACAAAGAGAAATTCATATTCATTCTTTCAGATCATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTGAGGAAGGAATTTCATATCCATTCATTCTCATTGGCCCACACAAAGAGTATATTCAATGGGAAGGAAAGCAGTGGAAGAAACAAAAAATGACCAAAAATGGATGGATTCCAATTCCACCTCGTCCAGTCAAAGGTCTGAAGCCGTTGGAGAATATTCCTCAAATCAACGTGCCACCACTTCCTGACCTGCTCGTCTTGTTTTGTCCACACTTGGCTGCTGAAATTCTGATGGTCAGAGAGAACGGGCGCGTCATTCGCACATGTGTCTACAACGAGCTCACCAAGAAATTTGAATACAACACAAGCTGTGCGAAATGCGCTACTAGTGTATCGTACAACAAGGCAGGGAACAAATCAACTTGGCATCAACGGAAACCGGACCAACAAAGACACCAGCAAAGATTTGTTCCTGAGCATAGACGTTTCGGAGTTGGGGCAACTCAGCATTAAACTGGTTCATCTTGGTAAGTGACTTTTCTTTCATGTTTTCTTTCAGTATAACATCTAAACAAAGAGAAATTCATATTCATTCTTTCAGATCATCGACAGCTAATCTGCTGACTACTACCGATTTGTGCACTCTTCACGTCATTATTTCCTCTACCAGCATCTGATGCCCGCTAACTTTCTTCTTTTCACAATCTTTAACTTTTACAACTTTTTACTTTCTTTTGTTGTCTGTCTCGTTTATGTCTTTCAATTGTTGAGCTGTTTCAATCGTTTTAAGATTCGTCTAATACATTTTTTTTTGATTTTTGAGTTTCTTATCTTTTTCATCTAAAAAGAAGATCCGCCAAATCAGGTTTATTAAAATTGGAAACTTTAGAAAAATAGTGAAGGTATATTCAGTTCATCCATCGGAAAGTATAGAGAAAACCCCGCAGATGAAGTTTGAAACAACAAAGGTGGTTACTGTAGGTGGTACCAAGGATGAGAACTCGGAAAATGAGAACTGCTACATATGACAACTGGAAAATAAGAACTCAGTTTACCG</canonical>
            <polymorphic>ATTTTTGAGGAAGGAATTTCATATCCATTCATTCTCATTGGCCCACACAAAGAGTATATTCAATGGGAAGGAAAGCAGTGGAAGAAACAAAAAATGACCAAAAATGGATGGATTCCAATTCCACCTCGTCCAGTCAAAGGTCTGAAGCCGTTGGAGAATATTCCTCAAATCAACGTGCCACCACTTCCTGACCTGCTCGTCTTGTTTTGTCCACACTTGGCTGCTGAAATTCTGATGGTCAGAGAGAACGGGCGCGTCATTCGCACATGTGTCTACAACGAGCTCACCAAGAAATTTGAATACAACACAAGCTGTGCGAAATGCGCTACTAGTGTATCGTACAACAAGGCAGGGAACAAATCAACTTGGCATCAACGGAAACCGGACCAACAAAGACACCAGCAAAGATTTGTTCCTGAGCATAGACGTTTCGGAGTTGGGGCAACTCAGCATTAAACTGGTTCATCTTGGTAAGTGACTTTTCTTTCATGTTTTCTTTYAGTATAACATCTAAACAAAGAGAAATTCATATTCATTCTTTCAGATCATCGACAGCTAATCTGCTGACTACTACCGATTTGTGCACTCTTCACGTCATTATTTCCTCTACCAGCATCTGATGCCCGCTAACTTTCTTCTTTTCACAATCTTTAACTTTTACAACTTTTTACTTTCTTTTGTTGTCTGTCTCGTTTATGTCTTTCAATTGTTGAGCTGTTTCAATCGTTTTAAGATTCGTCTAATACATTTTTTTTTGATTTTTGAGTTTCTTATCTTTTTCATCTAAAAAGAAGATCCGCCAAATCAGGTTTATTAAAATTGGAAACTTTAGAAAAATAGTGAAGGTATATTCAGTTCATCCATCGGAAAGTATAGAGAAAACCCCGCAGATGAAGTTTGAAACAACAAAGGTGGTTACTGTAGGTGGTACCAAGGATGAGAACTCGGAAAATGAGAACTGCTACATATGACAACTGGAAAATAAGAACTCAGTTTACCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGATTTGTTCCTGAGCATAG</pcr_primer_p1>
		<pcr_primer_p2>AAAGATTGTGAAAAGAAGAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAGATTTGTTCCTGAGCATAGACGTTTCGGAGTTGGGGCAACTCAGCATTAAACTGGTTCATCTTGGTAAGTGACTTTTCTTTCATGTTTTCTTTCAGTATAACATCTAAACAAAGAGAAATTCATATTCATTCTTTCAGATCATCGACAGCTAATCTGCTGACTACTACCGATTTGTGCACTCTTCACGTCATTATTTCCTCTACCAGCATCTGATGCCCGCTAACTTTCTTCTTTTCACAATCTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAGATTTGTTCCTGAGCATAGACGTTTCGGAGTTGGGGCAACTCAGCATTAAACTGGTTCATCTTGGTAAGTGACTTTTCTTTCATGTTTTCTTTYAGTATAACATCTAAACAAAGAGAAATTCATATTCATTCTTTCAGATCATCGACAGCTAATCTGCTGACTACTACCGATTTGTGCACTCTTCACGTCATTATTTCCTCTACCAGCATCTGATGCCCGCTAACTTTCTTCTTTTCACAATCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21647</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>800514</contig_pos>
        <strand>+</strand>
        <context>GGGCAACTCA[G/T]CATTAAACTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAGCAAAGATTTGTTCCTGAGCATAGACGTTTCGGAGTTGGGGCAACTCA</left_flank>
        <right_flank>CATTAAACTGGTTCATCTTGGTAAGTGACTTTTCTTTCATGTTTTCTTTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTCTGTTCCGAGACTGGAGGATTGGAGCAAGTTCGCAGAGACGATTTGATTTTTGAGGAAGGAATTTCATATCCATTCATTCTCATTGGCCCACACAAAGAGTATATTCAATGGGAAGGAAAGCAGTGGAAGAAACAAAAAATGACCAAAAATGGATGGATTCCAATTCCACCTCGTCCAGTCAAAGGTCTGAAGCCGTTGGAGAATATTCCTCAAATCAACGTGCCACCACTTCCTGACCTGCTCGTCTTGTTTTGTCCACACTTGGCTGCTGAAATTCTGATGGTCAGAGAGAACGGGCGCGTCATTCGCACATGTGTCTACAACGAGCTCACCAAGAAATTTGAATACAACACAAGCTGTGCGAAATGCGCTACTAGTGTATCGTACAACAAGGCAGGGAACAAATCAACTTGGCATCAACGGAAACCGGACCAACAAAGACACCAGCAAAGATTTGTTCCTGAGCATAGACGTTTCGGAGTTGGGGCAACTCAGCATTAAACTGGTTCATCTTGGTAAGTGACTTTTCTTTCATGTTTTCTTTCAGTATAACATCTAAACAAAGAGAAATTCATATTCATTCTTTCAGATCATCGACAGCTAATCTGCTGACTACTACCGATTTGTGCACTCTTCACGTCATTATTTCCTCTACCAGCATCTGATGCCCGCTAACTTTCTTCTTTTCACAATCTTTAACTTTTACAACTTTTTACTTTCTTTTGTTGTCTGTCTCGTTTATGTCTTTCAATTGTTGAGCTGTTTCAATCGTTTTAAGATTCGTCTAATACATTTTTTTTTGATTTTTGAGTTTCTTATCTTTTTCATCTAAAAAGAAGATCCGCCAAATCAGGTTTATTAAAATTGGAAACTTTAGAAAAATAGTGAAGGTATATTCAGTTCATCCATCGGAAAGTATAGAGAAAACCCCGCAGATGAAGTTTGAAACAACAAAGGTGGTTACTGTAGGTGGTACCAAGGATGAGAACTCGGAA</canonical>
            <polymorphic>TGTTCTGTTCCGAGACTGGAGGATTGGAGCAAGTTCGCAGAGACGATTTGATTTTTGAGGAAGGAATTTCATATCCATTCATTCTCATTGGCCCACACAAAGAGTATATTCAATGGGAAGGAAAGCAGTGGAAGAAACAAAAAATGACCAAAAATGGATGGATTCCAATTCCACCTCGTCCAGTCAAAGGTCTGAAGCCGTTGGAGAATATTCCTCAAATCAACGTGCCACCACTTCCTGACCTGCTCGTCTTGTTTTGTCCACACTTGGCTGCTGAAATTCTGATGGTCAGAGAGAACGGGCGCGTCATTCGCACATGTGTCTACAACGAGCTCACCAAGAAATTTGAATACAACACAAGCTGTGCGAAATGCGCTACTAGTGTATCGTACAACAAGGCAGGGAACAAATCAACTTGGCATCAACGGAAACCGGACCAACAAAGACACCAGCAAAGATTTGTTCCTGAGCATAGACGTTTCGGAGTTGGGGCAACTCAKCATTAAACTGGTTCATCTTGGTAAGTGACTTTTCTTTCATGTTTTCTTTCAGTATAACATCTAAACAAAGAGAAATTCATATTCATTCTTTCAGATCATCGACAGCTAATCTGCTGACTACTACCGATTTGTGCACTCTTCACGTCATTATTTCCTCTACCAGCATCTGATGCCCGCTAACTTTCTTCTTTTCACAATCTTTAACTTTTACAACTTTTTACTTTCTTTTGTTGTCTGTCTCGTTTATGTCTTTCAATTGTTGAGCTGTTTCAATCGTTTTAAGATTCGTCTAATACATTTTTTTTTGATTTTTGAGTTTCTTATCTTTTTCATCTAAAAAGAAGATCCGCCAAATCAGGTTTATTAAAATTGGAAACTTTAGAAAAATAGTGAAGGTATATTCAGTTCATCCATCGGAAAGTATAGAGAAAACCCCGCAGATGAAGTTTGAAACAACAAAGGTGGTTACTGTAGGTGGTACCAAGGATGAGAACTCGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 466 30</canonical_bands>
                <polymorphic_bands>534 466</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAAGAAATTTGAATACAACAC</pcr_primer_p1>
		<pcr_primer_p2>TGAATATGAATTTCTCTTTGTTTAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCAAGAAATTTGAATACAACACAAGCTGTGCGAAATGCGCTACTAGTGTATCGTACAACAAGGCAGGGAACAAATCAACTTGGCATCAACGGAAACCGGACCAACAAAGACACCAGCAAAGATTTGTTCCTGAGCATAGACGTTTCGGAGTTGGGGCAACTCAGCATTAAACTGGTTCATCTTGGTAAGTGACTTTTCTTTCATGTTTTCTTTCAGTATAACATCTAAACAAAGAGAAATTCATATTCA</canonical_amplicon>
		<polymorphic_amplicon>ACCAAGAAATTTGAATACAACACAAGCTGTGCGAAATGCGCTACTAGTGTATCGTACAACAAGGCAGGGAACAAATCAACTTGGCATCAACGGAAACCGGACCAACAAAGACACCAGCAAAGATTTGTTCCTGAGCATAGACGTTTCGGAGTTGGGGCAACTCAKCATTAAACTGGTTCATCTTGGTAAGTGACTTTTCTTTCATGTTTTCTTTCAGTATAACATCTAAACAAAGAGAAATTCATATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21648</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>800373</contig_pos>
        <strand>+</strand>
        <context>AATACAACAC[A/G]AGCTGTGCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCGCACATGTGTCTACAACGAGCTCACCAAGAAATTTGAATACAACAC</left_flank>
        <right_flank>AGCTGTGCGAAATGCGCTACTAGTGTATCGTACAACAAGGCAGGGAACAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAAATCATCATTGCGAAGGATGTGGACCACGTACCCAAGAAACAAATCTTCAACCAGTCTACTCAGTTTTCTGTTACAAATTGAACCGGTACGTCATTTTCGCCAGAAACGTCAAAGCAAAGAAAGTTGAAAAGTTCGTGTTCTGTTCCGAGACTGGAGGATTGGAGCAAGTTCGCAGAGACGATTTGATTTTTGAGGAAGGAATTTCATATCCATTCATTCTCATTGGCCCACACAAAGAGTATATTCAATGGGAAGGAAAGCAGTGGAAGAAACAAAAAATGACCAAAAATGGATGGATTCCAATTCCACCTCGTCCAGTCAAAGGTCTGAAGCCGTTGGAGAATATTCCTCAAATCAACGTGCCACCACTTCCTGACCTGCTCGTCTTGTTTTGTCCACACTTGGCTGCTGAAATTCTGATGGTCAGAGAGAACGGGCGCGTCATTCGCACATGTGTCTACAACGAGCTCACCAAGAAATTTGAATACAACACAAGCTGTGCGAAATGCGCTACTAGTGTATCGTACAACAAGGCAGGGAACAAATCAACTTGGCATCAACGGAAACCGGACCAACAAAGACACCAGCAAAGATTTGTTCCTGAGCATAGACGTTTCGGAGTTGGGGCAACTCAGCATTAAACTGGTTCATCTTGGTAAGTGACTTTTCTTTCATGTTTTCTTTCAGTATAACATCTAAACAAAGAGAAATTCATATTCATTCTTTCAGATCATCGACAGCTAATCTGCTGACTACTACCGATTTGTGCACTCTTCACGTCATTATTTCCTCTACCAGCATCTGATGCCCGCTAACTTTCTTCTTTTCACAATCTTTAACTTTTACAACTTTTTACTTTCTTTTGTTGTCTGTCTCGTTTATGTCTTTCAATTGTTGAGCTGTTTCAATCGTTTTAAGATTCGTCTAATACATTTTTTTTTGATTTTTGAGTTTCTTATCTTTTTCATCTAAAAAGAAGATCCGCCAAATCAGG</canonical>
            <polymorphic>TCAAAAATCATCATTGCGAAGGATGTGGACCACGTACCCAAGAAACAAATCTTCAACCAGTCTACTCAGTTTTCTGTTACAAATTGAACCGGTACGTCATTTTCGCCAGAAACGTCAAAGCAAAGAAAGTTGAAAAGTTCGTGTTCTGTTCCGAGACTGGAGGATTGGAGCAAGTTCGCAGAGACGATTTGATTTTTGAGGAAGGAATTTCATATCCATTCATTCTCATTGGCCCACACAAAGAGTATATTCAATGGGAAGGAAAGCAGTGGAAGAAACAAAAAATGACCAAAAATGGATGGATTCCAATTCCACCTCGTCCAGTCAAAGGTCTGAAGCCGTTGGAGAATATTCCTCAAATCAACGTGCCACCACTTCCTGACCTGCTCGTCTTGTTTTGTCCACACTTGGCTGCTGAAATTCTGATGGTCAGAGAGAACGGGCGCGTCATTCGCACATGTGTCTACAACGAGCTCACCAAGAAATTTGAATACAACACRAGCTGTGCGAAATGCGCTACTAGTGTATCGTACAACAAGGCAGGGAACAAATCAACTTGGCATCAACGGAAACCGGACCAACAAAGACACCAGCAAAGATTTGTTCCTGAGCATAGACGTTTCGGAGTTGGGGCAACTCAGCATTAAACTGGTTCATCTTGGTAAGTGACTTTTCTTTCATGTTTTCTTTCAGTATAACATCTAAACAAAGAGAAATTCATATTCATTCTTTCAGATCATCGACAGCTAATCTGCTGACTACTACCGATTTGTGCACTCTTCACGTCATTATTTCCTCTACCAGCATCTGATGCCCGCTAACTTTCTTCTTTTCACAATCTTTAACTTTTACAACTTTTTACTTTCTTTTGTTGTCTGTCTCGTTTATGTCTTTCAATTGTTGAGCTGTTTCAATCGTTTTAAGATTCGTCTAATACATTTTTTTTTGATTTTTGAGTTTCTTATCTTTTTCATCTAAAAAGAAGATCCGCCAAATCAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCTGATGGTCAGAGAGAA</pcr_primer_p1>
		<pcr_primer_p2>TACCAAGATGAACCAGTTTAATG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATTCTGATGGTCAGAGAGAACGGGCGCGTCATTCGCACATGTGTCTACAACGAGCTCACCAAGAAATTTGAATACAACACAAGCTGTGCGAAATGCGCTACTAGTGTATCGTACAACAAGGCAGGGAACAAATCAACTTGGCATCAACGGAAACCGGACCAACAAAGACACCAGCAAAGATTTGTTCCTGAGCATAGACGTTTCGGAGTTGGGGCAACTCAGCATTAAACTGGTTCATCTTGGTA</canonical_amplicon>
		<polymorphic_amplicon>AAATTCTGATGGTCAGAGAGAACGGGCGCGTCATTCGCACATGTGTCTACAACGAGCTCACCAAGAAATTTGAATACAACACRAGCTGTGCGAAATGCGCTACTAGTGTATCGTACAACAAGGCAGGGAACAAATCAACTTGGCATCAACGGAAACCGGACCAACAAAGACACCAGCAAAGATTTGTTCCTGAGCATAGACGTTTCGGAGTTGGGGCAACTCAGCATTAAACTGGTTCATCTTGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21649</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>800230</contig_pos>
        <strand>+</strand>
        <context>GAATATTCCT[C/G]AAATCAACGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAATTCCACCTCGTCCAGTCAAAGGTCTGAAGCCGTTGGAGAATATTCCT</left_flank>
        <right_flank>AAATCAACGTGCCACCACTTCCTGACCTGCTCGTCTTGTTTTGTCCACAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCATCTTCATTTGCCAATCGTAGAATCGTCATTGGATCGTTTGATAGAATGGTGTGCCCAATCAGTGGAATGCCATTGATTACAGTTTCCACGAGAAATGAGGAAAATATGATGTATAGCTACAACGTCCACAAGAATAAAGTCAAAAATCATCATTGCGAAGGATGTGGACCACGTACCCAAGAAACAAATCTTCAACCAGTCTACTCAGTTTTCTGTTACAAATTGAACCGGTACGTCATTTTCGCCAGAAACGTCAAAGCAAAGAAAGTTGAAAAGTTCGTGTTCTGTTCCGAGACTGGAGGATTGGAGCAAGTTCGCAGAGACGATTTGATTTTTGAGGAAGGAATTTCATATCCATTCATTCTCATTGGCCCACACAAAGAGTATATTCAATGGGAAGGAAAGCAGTGGAAGAAACAAAAAATGACCAAAAATGGATGGATTCCAATTCCACCTCGTCCAGTCAAAGGTCTGAAGCCGTTGGAGAATATTCCTCAAATCAACGTGCCACCACTTCCTGACCTGCTCGTCTTGTTTTGTCCACACTTGGCTGCTGAAATTCTGATGGTCAGAGAGAACGGGCGCGTCATTCGCACATGTGTCTACAACGAGCTCACCAAGAAATTTGAATACAACACAAGCTGTGCGAAATGCGCTACTAGTGTATCGTACAACAAGGCAGGGAACAAATCAACTTGGCATCAACGGAAACCGGACCAACAAAGACACCAGCAAAGATTTGTTCCTGAGCATAGACGTTTCGGAGTTGGGGCAACTCAGCATTAAACTGGTTCATCTTGGTAAGTGACTTTTCTTTCATGTTTTCTTTCAGTATAACATCTAAACAAAGAGAAATTCATATTCATTCTTTCAGATCATCGACAGCTAATCTGCTGACTACTACCGATTTGTGCACTCTTCACGTCATTATTTCCTCTACCAGCATCTGATGCCCGCTAACTTTCTTCTTTTCACAATCTTTAACTTTTACAACTT</canonical>
            <polymorphic>GTCATCTTCATTTGCCAATCGTAGAATCGTCATTGGATCGTTTGATAGAATGGTGTGCCCAATCAGTGGAATGCCATTGATTACAGTTTCCACGAGAAATGAGGAAAATATGATGTATAGCTACAACGTCCACAAGAATAAAGTCAAAAATCATCATTGCGAAGGATGTGGACCACGTACCCAAGAAACAAATCTTCAACCAGTCTACTCAGTTTTCTGTTACAAATTGAACCGGTACGTCATTTTCGCCAGAAACGTCAAAGCAAAGAAAGTTGAAAAGTTCGTGTTCTGTTCCGAGACTGGAGGATTGGAGCAAGTTCGCAGAGACGATTTGATTTTTGAGGAAGGAATTTCATATCCATTCATTCTCATTGGCCCACACAAAGAGTATATTCAATGGGAAGGAAAGCAGTGGAAGAAACAAAAAATGACCAAAAATGGATGGATTCCAATTCCACCTCGTCCAGTCAAAGGTCTGAAGCCGTTGGAGAATATTCCTSAAATCAACGTGCCACCACTTCCTGACCTGCTCGTCTTGTTTTGTCCACACTTGGCTGCTGAAATTCTGATGGTCAGAGAGAACGGGCGCGTCATTCGCACATGTGTCTACAACGAGCTCACCAAGAAATTTGAATACAACACAAGCTGTGCGAAATGCGCTACTAGTGTATCGTACAACAAGGCAGGGAACAAATCAACTTGGCATCAACGGAAACCGGACCAACAAAGACACCAGCAAAGATTTGTTCCTGAGCATAGACGTTTCGGAGTTGGGGCAACTCAGCATTAAACTGGTTCATCTTGGTAAGTGACTTTTCTTTCATGTTTTCTTTCAGTATAACATCTAAACAAAGAGAAATTCATATTCATTCTTTCAGATCATCGACAGCTAATCTGCTGACTACTACCGATTTGTGCACTCTTCACGTCATTATTTCCTCTACCAGCATCTGATGCCCGCTAACTTTCTTCTTTTCACAATCTTTAACTTTTACAACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTATATTCAATGGGAAGGAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTGTATTCAAATTTCTTGGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AGTATATTCAATGGGAAGGAAAGCAGTGGAAGAAACAAAAAATGACCAAAAATGGATGGATTCCAATTCCACCTCGTCCAGTCAAAGGTCTGAAGCCGTTGGAGAATATTCCTCAAATCAACGTGCCACCACTTCCTGACCTGCTCGTCTTGTTTTGTCCACACTTGGCTGCTGAAATTCTGATGGTCAGAGAGAACGGGCGCGTCATTCGCACATGTGTCTACAACGAGCTCACCAAGAAATTTGAATACAA</canonical_amplicon>
		<polymorphic_amplicon>AGTATATTCAATGGGAAGGAAAGCAGTGGAAGAAACAAAAAATGACCAAAAATGGATGGATTCCAATTCCACCTCGTCCAGTCAAAGGTCTGAAGCCGTTGGAGAATATTCCTSAAATCAACGTGCCACCACTTCCTGACCTGCTCGTCTTGTTTTGTCCACACTTGGCTGCTGAAATTCTGATGGTCAGAGAGAACGGGCGCGTCATTCGCACATGTGTCTACAACGAGCTCACCAAGAAATTTGAATACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21650</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>800164</contig_pos>
        <strand></strand>
        <context>AAAAATGACC[A/G]AAAATGGATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGAGTATATTCAATGGGAAGGAAAGCAGTGGAAGAAACAAAAAATGACC</left_flank>
        <right_flank>AAAATGGATGGATTCCAATTCCACCTCGTCCAGTCAAAGGTCTGAAGCCG</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTCATCTCCATCTCCTCCAACCACACCAACCATCGAGCAGCAGCATCCAGAGTTCTTCCTGTCGTCATCTTCATTTGCCAATCGTAGAATCGTCATTGGATCGTTTGATAGAATGGTGTGCCCAATCAGTGGAATGCCATTGATTACAGTTTCCACGAGAAATGAGGAAAATATGATGTATAGCTACAACGTCCACAAGAATAAAGTCAAAAATCATCATTGCGAAGGATGTGGACCACGTACCCAAGAAACAAATCTTCAACCAGTCTACTCAGTTTTCTGTTACAAATTGAACCGGTACGTCATTTTCGCCAGAAACGTCAAAGCAAAGAAAGTTGAAAAGTTCGTGTTCTGTTCCGAGACTGGAGGATTGGAGCAAGTTCGCAGAGACGATTTGATTTTTGAGGAAGGAATTTCATATCCATTCATTCTCATTGGCCCACACAAAGAGTATATTCAATGGGAAGGAAAGCAGTGGAAGAAACAAAAAATGACCAAAAATGGATGGATTCCAATTCCACCTCGTCCAGTCAAAGGTCTGAAGCCGTTGGAGAATATTCCTCAAATCAACGTGCCACCACTTCCTGACCTGCTCGTCTTGTTTTGTCCACACTTGGCTGCTGAAATTCTGATGGTCAGAGAGAACGGGCGCGTCATTCGCACATGTGTCTACAACGAGCTCACCAAGAAATTTGAATACAACACAAGCTGTGCGAAATGCGCTACTAGTGTATCGTACAACAAGGCAGGGAACAAATCAACTTGGCATCAACGGAAACCGGACCAACAAAGACACCAGCAAAGATTTGTTCCTGAGCATAGACGTTTCGGAGTTGGGGCAACTCAGCATTAAACTGGTTCATCTTGGTAAGTGACTTTTCTTTCATGTTTTCTTTCAGTATAACATCTAAACAAAGAGAAATTCATATTCATTCTTTCAGATCATCGACAGCTAATCTGCTGACTACTACCGATTTGTGCACTCTTCACGTCATTA</canonical>
            <polymorphic>TTTCTCATCTCCATCTCCTCCAACCACACCAACCATCGAGCAGCAGCATCCAGAGTTCTTCCTGTCGTCATCTTCATTTGCCAATCGTAGAATCGTCATTGGATCGTTTGATAGAATGGTGTGCCCAATCAGTGGAATGCCATTGATTACAGTTTCCACGAGAAATGAGGAAAATATGATGTATAGCTACAACGTCCACAAGAATAAAGTCAAAAATCATCATTGCGAAGGATGTGGACCACGTACCCAAGAAACAAATCTTCAACCAGTCTACTCAGTTTTCTGTTACAAATTGAACCGGTACGTCATTTTCGCCAGAAACGTCAAAGCAAAGAAAGTTGAAAAGTTCGTGTTCTGTTCCGAGACTGGAGGATTGGAGCAAGTTCGCAGAGACGATTTGATTTTTGAGGAAGGAATTTCATATCCATTCATTCTCATTGGCCCACACAAAGAGTATATTCAATGGGAAGGAAAGCAGTGGAAGAAACAAAAAATGACCRAAAATGGATGGATTCCAATTCCACCTCGTCCAGTCAAAGGTCTGAAGCCGTTGGAGAATATTCCTCAAATCAACGTGCCACCACTTCCTGACCTGCTCGTCTTGTTTTGTCCACACTTGGCTGCTGAAATTCTGATGGTCAGAGAGAACGGGCGCGTCATTCGCACATGTGTCTACAACGAGCTCACCAAGAAATTTGAATACAACACAAGCTGTGCGAAATGCGCTACTAGTGTATCGTACAACAAGGCAGGGAACAAATCAACTTGGCATCAACGGAAACCGGACCAACAAAGACACCAGCAAAGATTTGTTCCTGAGCATAGACGTTTCGGAGTTGGGGCAACTCAGCATTAAACTGGTTCATCTTGGTAAGTGACTTTTCTTTCATGTTTTCTTTCAGTATAACATCTAAACAAAGAGAAATTCATATTCATTCTTTCAGATCATCGACAGCTAATCTGCTGACTACTACCGATTTGTGCACTCTTCACGTCATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTCATATCCATTCATTCTCA</pcr_primer_p1>
		<pcr_primer_p2>TTCTCTCTGACCATCAGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>AATTTCATATCCATTCATTCTCATTGGCCCACACAAAGAGTATATTCAATGGGAAGGAAAGCAGTGGAAGAAACAAAAAATGACCAAAAATGGATGGATTCCAATTCCACCTCGTCCAGTCAAAGGTCTGAAGCCGTTGGAGAATATTCCTCAAATCAACGTGCCACCACTTCCTGACCTGCTCGTCTTGTTTTGTCCACACTTGGCTGCTGAAATTCTGATGGTCAGAGAGAA</canonical_amplicon>
		<polymorphic_amplicon>AATTTCATATCCATTCATTCTCATTGGCCCACACAAAGAGTATATTCAATGGGAAGGAAAGCAGTGGAAGAAACAAAAAATGACCRAAAATGGATGGATTCCAATTCCACCTCGTCCAGTCAAAGGTCTGAAGCCGTTGGAGAATATTCCTCAAATCAACGTGCCACCACTTCCTGACCTGCTCGTCTTGTTTTGTCCACACTTGGCTGCTGAAATTCTGATGGTCAGAGAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21651</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>800148</contig_pos>
        <strand>+</strand>
        <context>AGCAGTGGRA[A/G]AAACAAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCATTGGCCCACACAAAGAGTATATTCAATGGGAAGGAAAGCAGTGGAA</left_flank>
        <right_flank>AAACAAAAAATGACCAAAAATGGATGGATTCCAATTCCACCTCGTCCAGT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTGGATTCGCCAGTTTTCTCATCTCCATCTCCTCCAACCACACCAACCATCGAGCAGCAGCATCCAGAGTTCTTCCTGTCGTCATCTTCATTTGCCAATCGTAGAATCGTCATTGGATCGTTTGATAGAATGGTGTGCCCAATCAGTGGAATGCCATTGATTACAGTTTCCACGAGAAATGAGGAAAATATGATGTATAGCTACAACGTCCACAAGAATAAAGTCAAAAATCATCATTGCGAAGGATGTGGACCACGTACCCAAGAAACAAATCTTCAACCAGTCTACTCAGTTTTCTGTTACAAATTGAACCGGTACGTCATTTTCGCCAGAAACGTCAAAGCAAAGAAAGTTGAAAAGTTCGTGTTCTGTTCCGAGACTGGAGGATTGGAGCAAGTTCGCAGAGACGATTTGATTTTTGAGGAAGGAATTTCATATCCATTCATTCTCATTGGCCCACACAAAGAGTATATTCAATGGGAAGGAAAGCAGTGGAAGAAACAAAAAATGACCAAAAATGGATGGATTCCAATTCCACCTCGTCCAGTCAAAGGTCTGAAGCCGTTGGAGAATATTCCTCAAATCAACGTGCCACCACTTCCTGACCTGCTCGTCTTGTTTTGTCCACACTTGGCTGCTGAAATTCTGATGGTCAGAGAGAACGGGCGCGTCATTCGCACATGTGTCTACAACGAGCTCACCAAGAAATTTGAATACAACACAAGCTGTGCGAAATGCGCTACTAGTGTATCGTACAACAAGGCAGGGAACAAATCAACTTGGCATCAACGGAAACCGGACCAACAAAGACACCAGCAAAGATTTGTTCCTGAGCATAGACGTTTCGGAGTTGGGGCAACTCAGCATTAAACTGGTTCATCTTGGTAAGTGACTTTTCTTTCATGTTTTCTTTCAGTATAACATCTAAACAAAGAGAAATTCATATTCATTCTTTCAGATCATCGACAGCTAATCTGCTGACTACTACCGATTTGTGC</canonical>
            <polymorphic>CTCTGGATTCGCCAGTTTTCTCATCTCCATCTCCTCCAACCACACCAACCATCGAGCAGCAGCATCCAGAGTTCTTCCTGTCGTCATCTTCATTTGCCAATCGTAGAATCGTCATTGGATCGTTTGATAGAATGGTGTGCCCAATCAGTGGAATGCCATTGATTACAGTTTCCACGAGAAATGAGGAAAATATGATGTATAGCTACAACGTCCACAAGAATAAAGTCAAAAATCATCATTGCGAAGGATGTGGACCACGTACCCAAGAAACAAATCTTCAACCAGTCTACTCAGTTTTCTGTTACAAATTGAACCGGTACGTCATTTTCGCCAGAAACGTCAAAGCAAAGAAAGTTGAAAAGTTCGTGTTCTGTTCCGAGACTGGAGGATTGGAGCAAGTTCGCAGAGACGATTTGATTTTTGAGGAAGGAATTTCATATCCATTCATTCTCATTGGCCCACACAAAGAGTATATTCAATGGGAAGGAAAGCAGTGGAARAAACAAAAAATGACCAAAAATGGATGGATTCCAATTCCACCTCGTCCAGTCAAAGGTCTGAAGCCGTTGGAGAATATTCCTCAAATCAACGTGCCACCACTTCCTGACCTGCTCGTCTTGTTTTGTCCACACTTGGCTGCTGAAATTCTGATGGTCAGAGAGAACGGGCGCGTCATTCGCACATGTGTCTACAACGAGCTCACCAAGAAATTTGAATACAACACAAGCTGTGCGAAATGCGCTACTAGTGTATCGTACAACAAGGCAGGGAACAAATCAACTTGGCATCAACGGAAACCGGACCAACAAAGACACCAGCAAAGATTTGTTCCTGAGCATAGACGTTTCGGAGTTGGGGCAACTCAGCATTAAACTGGTTCATCTTGGTAAGTGACTTTTCTTTCATGTTTTCTTTCAGTATAACATCTAAACAAAGAGAAATTCATATTCATTCTTTCAGATCATCGACAGCTAATCTGCTGACTACTACCGATTTGTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTCATATCCATTCATTCTCA</pcr_primer_p1>
		<pcr_primer_p2>TTCTCTCTGACCATCAGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>AATTTCATATCCATTCATTCTCATTGGCCCACACAAAGAGTATATTCAATGGGAAGGAAAGCAGTGGAAGAAACAAAAAATGACCAAAAATGGATGGATTCCAATTCCACCTCGTCCAGTCAAAGGTCTGAAGCCGTTGGAGAATATTCCTCAAATCAACGTGCCACCACTTCCTGACCTGCTCGTCTTGTTTTGTCCACACTTGGCTGCTGAAATTCTGATGGTCAGAGAGAA</canonical_amplicon>
		<polymorphic_amplicon>AATTTCATATCCATTCATTCTCATTGGCCCACACAAAGAGTATATTCAATGGGAAGGAAAGCAGTGGAARAAACAAAAAATGACCAAAAATGGATGGATTCCAATTCCACCTCGTCCAGTCAAAGGTCTGAAGCCGTTGGAGAATATTCCTCAAATCAACGTGCCACCACTTCCTGACCTGCTCGTCTTGTTTTGTCCACACTTGGCTGCTGAAATTCTGATGGTCAGAGAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21652</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>816860</contig_pos>
        <strand>+</strand>
        <context>ATCGCGGCGG[A/G]CAGTCTRAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCGTGATCCCTTGATGACCAATTTTGGATCCATGGCGGAATCGCGGCGG</left_flank>
        <right_flank>CAGTCTGAAAATTATACAGTTTTAAATTAAATTCAATTAAATTTTGCAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATATTTCATGTCAAATCTGAGCCATAGTATAAGAACAACAAGCACAGAAATCATTCTCTTGATGACGGTGAGACGTTGAAGCTTTCTTTAAGACTCTAATGTCTGAATCAACAAATCCCAACTGTCTGTTCATCCTAGTTTTCTTTGTCACAGTAAAAGAAAGCTAAAAGGAGCGGAGAAAGGGGTCTGATACGAAGCTGAGACGGTTCTAACAAATAAACCAGATGTGAAGAACTCTAGAAACACGGCCAAAAACCATCTCGAATGTAGTCTGGGAGTAATTAGTAATCGACCAAATTAATAAGGACCTGATGCCCACCTATTAAGTGAAAGTTAGAAAAAATGGAATTTAATTATTCAGTAATTACAGTTTTATACAATTACCAAGAGAAAATGATTATCTGGGAATTTAGTTGGTGGGGTCAAAGATGATTTTATTTTTCTTGGTGCGTGATCCCTTGATGACCAATTTTGGATCCATGGCGGAATCGCGGCGGGCAGTCTGAAAATTATACAGTTTTAAATTAAATTCAATTAAATTTTGCAGGTTTTACAGAATAGAACGATTATTAATGACATTATTTAGTTGTGCAGGTTGTTCCTTGCCGCTGATAGATTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAGCGACTGGTGTGAAAAACCTGAACTATAGCATCTGTCAGAAAATAGTCAGCGTCCGTCTACAATATTGAGAAAAAGATTCTCACCTTACGAATCCCACTGCGATTCGAAGTCCCGACTGGAGCAACGGCCTTAGCACTCGCCTTTGAGGCAGATGGGGTGGCAGCCTGAAAATTA</canonical>
            <polymorphic>GAATATTTCATGTCAAATCTGAGCCATAGTATAAGAACAACAAGCACAGAAATCATTCTCTTGATGACGGTGAGACGTTGAAGCTTTCTTTAAGACTCTAATGTCTGAATCAACAAATCCCAACTGTCTGTTCATCCTAGTTTTCTTTGTCACAGTAAAAGAAAGCTAAAAGGAGCGGAGAAAGGGGTCTGATACGAAGCTGAGACGGTTCTAACAAATAAACCAGATGTGAAGAACTCTAGAAACACGGCCAAAAACCATCTCGAATGTAGTCTGGGAGTAATTAGTAATCGACCAAATTAATAAGGACCTGATGCCCACCTATTAAGTGAAAGTTAGAAAAAATGGAATTTAATTATTCAGTAATTACAGTTTTATACAATTACCAAGAGAAAATGATTATCTGGGAATTTAGTTGGTGGGGTCAAAGATGATTTTATTTTTCTTGGTGCGTGATCCCTTGATGACCAATTTTGGATCCATGGCGGAATCGCGGCGGRCAGTCTGAAAATTATACAGTTTTAAATTAAATTCAATTAAATTTTGCAGGTTTTACAGAATAGAACGATTATTAATGACATTATTTAGTTGTGCAGGTTGTTCCTTGCCGCTGATAGATTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAGCGACTGGTGTGAAAAACCTGAACTATAGCATCTGTCAGAAAATAGTCAGCGTCCGTCTACAATATTGAGAAAAAGATTCTCACCTTACGAATCCCACTGCGATTCGAAGTCCCGACTGGAGCAACGGCCTTAGCACTCGCCTTTGAGGCAGATGGGGTGGCAGCCTGAAAATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 266 236</canonical_bands>
                <polymorphic_bands>764 236</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCACCTATTAAGTGAAAGTTAGA</pcr_primer_p1>
		<pcr_primer_p2>TCTATTCTGTAAAACCTGCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCCACCTATTAAGTGAAAGTTAGAAAAAATGGAATTTAATTATTCAGTAATTACAGTTTTATACAATTACCAAGAGAAAATGATTATCTGGGAATTTAGTTGGTGGGGTCAAAGATGATTTTATTTTTCTTGGTGCGTGATCCCTTGATGACCAATTTTGGATCCATGGCGGAATCGCGGCGGGCAGTCTGAAAATTATACAGTTTTAAATTAAATTCAATTAAATTTTGCAGGTTTTACAGAATAGA</canonical_amplicon>
		<polymorphic_amplicon>CCCACCTATTAAGTGAAAGTTAGAAAAAATGGAATTTAATTATTCAGTAATTACAGTTTTATACAATTACCAAGAGAAAATGATTATCTGGGAATTTAGTTGGTGGGGTCAAAGATGATTTTATTTTTCTTGGTGCGTGATCCCTTGATGACCAATTTTGGATCCATGGCGGAATCGCGGCGGRCAGTCTGAAAATTATACAGTTTTAAATTAAATTCAATTAAATTTTGCAGGTTTTACAGAATAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21653</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>816978</contig_pos>
        <strand>+</strand>
        <context>CCGCTGATAG[A/G]TTTCAATAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTATTAATGACATTATTTAGTTGTGCAGGTTGTTCCTTGCCGCTGATAG</left_flank>
        <right_flank>TTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCAACTGTCTGTTCATCCTAGTTTTCTTTGTCACAGTAAAAGAAAGCTAAAAGGAGCGGAGAAAGGGGTCTGATACGAAGCTGAGACGGTTCTAACAAATAAACCAGATGTGAAGAACTCTAGAAACACGGCCAAAAACCATCTCGAATGTAGTCTGGGAGTAATTAGTAATCGACCAAATTAATAAGGACCTGATGCCCACCTATTAAGTGAAAGTTAGAAAAAATGGAATTTAATTATTCAGTAATTACAGTTTTATACAATTACCAAGAGAAAATGATTATCTGGGAATTTAGTTGGTGGGGTCAAAGATGATTTTATTTTTCTTGGTGCGTGATCCCTTGATGACCAATTTTGGATCCATGGCGGAATCGCGGCGGGCAGTCTGAAAATTATACAGTTTTAAATTAAATTCAATTAAATTTTGCAGGTTTTACAGAATAGAACGATTATTAATGACATTATTTAGTTGTGCAGGTTGTTCCTTGCCGCTGATAGATTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAGCGACTGGTGTGAAAAACCTGAACTATAGCATCTGTCAGAAAATAGTCAGCGTCCGTCTACAATATTGAGAAAAAGATTCTCACCTTACGAATCCCACTGCGATTCGAAGTCCCGACTGGAGCAACGGCCTTAGCACTCGCCTTTGAGGCAGATGGGGTGGCAGCCTGAAAATTATACACTTGAGTTGTACAGAATCATAAGATTGTTTCAAGTTTGTGGTTATTGACTTGCCTATATTCATTTTTTGGCTATTTACTTTCTGCAGATAGACTTAAAAATTTTGCATTTTCTC</canonical>
            <polymorphic>CCCAACTGTCTGTTCATCCTAGTTTTCTTTGTCACAGTAAAAGAAAGCTAAAAGGAGCGGAGAAAGGGGTCTGATACGAAGCTGAGACGGTTCTAACAAATAAACCAGATGTGAAGAACTCTAGAAACACGGCCAAAAACCATCTCGAATGTAGTCTGGGAGTAATTAGTAATCGACCAAATTAATAAGGACCTGATGCCCACCTATTAAGTGAAAGTTAGAAAAAATGGAATTTAATTATTCAGTAATTACAGTTTTATACAATTACCAAGAGAAAATGATTATCTGGGAATTTAGTTGGTGGGGTCAAAGATGATTTTATTTTTCTTGGTGCGTGATCCCTTGATGACCAATTTTGGATCCATGGCGGAATCGCGGCGGGCAGTCTGAAAATTATACAGTTTTAAATTAAATTCAATTAAATTTTGCAGGTTTTACAGAATAGAACGATTATTAATGACATTATTTAGTTGTGCAGGTTGTTCCTTGCCGCTGATAGRTTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAGCGACTGGTGTGAAAAACCTGAACTATAGCATCTGTCAGAAAATAGTCAGCGTCCGTCTACAATATTGAGAAAAAGATTCTCACCTTACGAATCCCACTGCGATTCGAAGTCCCGACTGGAGCAACGGCCTTAGCACTCGCCTTTGAGGCAGATGGGGTGGCAGCCTGAAAATTATACACTTGAGTTGTACAGAATCATAAGATTGTTTCAAGTTTGTGGTTATTGACTTGCCTATATTCATTTTTTGGCTATTTACTTTCTGCAGATAGACTTAAAAATTTTGCATTTTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGTTTTACAGAATAGAACGAT</pcr_primer_p1>
		<pcr_primer_p2>CATTTTTCTAAGCCAATTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CAGGTTTTACAGAATAGAACGATTATTAATGACATTATTTAGTTGTGCAGGTTGTTCCTTGCCGCTGATAGATTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATG</canonical_amplicon>
		<polymorphic_amplicon>CAGGTTTTACAGAATAGAACGATTATTAATGACATTATTTAGTTGTGCAGGTTGTTCCTTGCCGCTGATAGRTTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21654</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>817021</contig_pos>
        <strand>+</strand>
        <context>GTTTTCGAGG[A/G]AAATGTTAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGATAGATTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGG</left_flank>
        <right_flank>AAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGCTAAAAGGAGCGGAGAAAGGGGTCTGATACGAAGCTGAGACGGTTCTAACAAATAAACCAGATGTGAAGAACTCTAGAAACACGGCCAAAAACCATCTCGAATGTAGTCTGGGAGTAATTAGTAATCGACCAAATTAATAAGGACCTGATGCCCACCTATTAAGTGAAAGTTAGAAAAAATGGAATTTAATTATTCAGTAATTACAGTTTTATACAATTACCAAGAGAAAATGATTATCTGGGAATTTAGTTGGTGGGGTCAAAGATGATTTTATTTTTCTTGGTGCGTGATCCCTTGATGACCAATTTTGGATCCATGGCGGAATCGCGGCGGGCAGTCTGAAAATTATACAGTTTTAAATTAAATTCAATTAAATTTTGCAGGTTTTACAGAATAGAACGATTATTAATGACATTATTTAGTTGTGCAGGTTGTTCCTTGCCGCTGATAGATTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAGCGACTGGTGTGAAAAACCTGAACTATAGCATCTGTCAGAAAATAGTCAGCGTCCGTCTACAATATTGAGAAAAAGATTCTCACCTTACGAATCCCACTGCGATTCGAAGTCCCGACTGGAGCAACGGCCTTAGCACTCGCCTTTGAGGCAGATGGGGTGGCAGCCTGAAAATTATACACTTGAGTTGTACAGAATCATAAGATTGTTTCAAGTTTGTGGTTATTGACTTGCCTATATTCATTTTTTGGCTATTTACTTTCTGCAGATAGACTTAAAAATTTTGCATTTTCTCAGTTAGGGTGGATTTGAAAGGACTGTCTCGTGCATACAACTGG</canonical>
            <polymorphic>AAAGCTAAAAGGAGCGGAGAAAGGGGTCTGATACGAAGCTGAGACGGTTCTAACAAATAAACCAGATGTGAAGAACTCTAGAAACACGGCCAAAAACCATCTCGAATGTAGTCTGGGAGTAATTAGTAATCGACCAAATTAATAAGGACCTGATGCCCACCTATTAAGTGAAAGTTAGAAAAAATGGAATTTAATTATTCAGTAATTACAGTTTTATACAATTACCAAGAGAAAATGATTATCTGGGAATTTAGTTGGTGGGGTCAAAGATGATTTTATTTTTCTTGGTGCGTGATCCCTTGATGACCAATTTTGGATCCATGGCGGAATCGCGGCGGGCAGTCTGAAAATTATACAGTTTTAAATTAAATTCAATTAAATTTTGCAGGTTTTACAGAATAGAACGATTATTAATGACATTATTTAGTTGTGCAGGTTGTTCCTTGCCGCTGATAGATTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGRAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAGCGACTGGTGTGAAAAACCTGAACTATAGCATCTGTCAGAAAATAGTCAGCGTCCGTCTACAATATTGAGAAAAAGATTCTCACCTTACGAATCCCACTGCGATTCGAAGTCCCGACTGGAGCAACGGCCTTAGCACTCGCCTTTGAGGCAGATGGGGTGGCAGCCTGAAAATTATACACTTGAGTTGTACAGAATCATAAGATTGTTTCAAGTTTGTGGTTATTGACTTGCCTATATTCATTTTTTGGCTATTTACTTTCTGCAGATAGACTTAAAAATTTTGCATTTTCTCAGTTAGGGTGGATTTGAAAGGACTGTCTCGTGCATACAACTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGTTTTACAGAATAGAACGAT</pcr_primer_p1>
		<pcr_primer_p2>CATTTTTCTAAGCCAATTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CAGGTTTTACAGAATAGAACGATTATTAATGACATTATTTAGTTGTGCAGGTTGTTCCTTGCCGCTGATAGATTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATG</canonical_amplicon>
		<polymorphic_amplicon>CAGGTTTTACAGAATAGAACGATTATTAATGACATTATTTAGTTGTGCAGGTTGTTCCTTGCCGCTGATAGATTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGRAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21655</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>818909</contig_pos>
        <strand>+</strand>
        <context>ACTTACTGGG[C/T]CTGGTGGGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGG</left_flank>
        <right_flank>CTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAATCGGACGGATCGTATGGGACAGGCAGATGGTGTGGTAAACCACGCCCACATTGTTTCTCTTTCTCTTCTGGGAGGGGGACATAATAGGCACTGTGGCATGCTAAGAGCAGGATTGTCTACAGATGGTTTGGTAGGTGACCCTTGGCAATGGTCCCTCTGGTTACCCCTCTTTCTACTACAACACCACCATCACACAGCCTCCACCA</canonical>
            <polymorphic>AATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGYCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAATCGGACGGATCGTATGGGACAGGCAGATGGTGTGGTAAACCACGCCCACATTGTTTCTCTTTCTCTTCTGGGAGGGGGACATAATAGGCACTGTGGCATGCTAAGAGCAGGATTGTCTACAGATGGTTTGGTAGGTGACCCTTGGCAATGGTCCCTCTGGTTACCCCTCTTTCTACTACAACACCACCATCACACAGCCTCCACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAGAAGACGCTTTTGTTG</pcr_primer_p1>
		<pcr_primer_p2>GATTTGCTTGATTACTCAACTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATC</canonical_amplicon>
		<polymorphic_amplicon>ATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGYCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21656</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>818890</contig_pos>
        <strand>+</strand>
        <context>TTATCAGTAT[C/T]CAATGAAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTAT</left_flank>
        <right_flank>CAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATGTATGTTTAAATTCAAATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAATCGGACGGATCGTATGGGACAGGCAGATGGTGTGGTAAACCACGCCCACATTGTTTCTCTTTCTCTTCTGGGAGGGGGACATAATAGGCACTGTGGCATGCTAAGAGCAGGATTGTCTACAGATGGTTTGGTAGGTGACCCTTGGCAATGGTCCCTCTGGTTACCCCTCTTTCTACTACAACACCAC</canonical>
            <polymorphic>CTATGTATGTTTAAATTCAAATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATYCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAATCGGACGGATCGTATGGGACAGGCAGATGGTGTGGTAAACCACGCCCACATTGTTTCTCTTTCTCTTCTGGGAGGGGGACATAATAGGCACTGTGGCATGCTAAGAGCAGGATTGTCTACAGATGGTTTGGTAGGTGACCCTTGGCAATGGTCCCTCTGGTTACCCCTCTTTCTACTACAACACCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAGAAGACGCTTTTGTTG</pcr_primer_p1>
		<pcr_primer_p2>GATTTGCTTGATTACTCAACTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATC</canonical_amplicon>
		<polymorphic_amplicon>ATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATYCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21657</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>818844</contig_pos>
        <strand>+</strand>
        <context>TGAAATTGTG[C/T]TTTCTTGAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTG</left_flank>
        <right_flank>TTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTTTTGAAACTTCTTAAGTCCTCTATGGTTTCATTTTAATATTACCTATGTATGTTTAAATTCAAATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAATCGGACGGATCGTATGGGACAGGCAGATGGTGTGGTAAACCACGCCCACATTGTTTCTCTTTCTCTTCTGGGAGGGGGACATAATAGGCACTGTGGCATGCTAAGAGCAGGATTGTCTACAGATGGTTTGGTAGGTGACCC</canonical>
            <polymorphic>CGTTTTGAAACTTCTTAAGTCCTCTATGGTTTCATTTTAATATTACCTATGTATGTTTAAATTCAAATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGYTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAATCGGACGGATCGTATGGGACAGGCAGATGGTGTGGTAAACCACGCCCACATTGTTTCTCTTTCTCTTCTGGGAGGGGGACATAATAGGCACTGTGGCATGCTAAGAGCAGGATTGTCTACAGATGGTTTGGTAGGTGACCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGGCTTAGCATCAGAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTGATTACTCAACTTCTTGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAA</canonical_amplicon>
		<polymorphic_amplicon>GAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGYTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21658</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>818780</contig_pos>
        <strand>+</strand>
        <context>CGAAGGCTYR[A/G]TAGCCTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTA</left_flank>
        <right_flank>TAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAG</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTGGCGGCGGATCCCTTTCCTCCACTTGGCGGGGCCTGAAATCACTTAATTTCGTAGAAAGAACGTTTTGAAACTTCTTAAGTCCTCTATGGTTTCATTTTAATATTACCTATGTATGTTTAAATTCAAATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAATCGGACGGATCGTATGGGACAGGCAGATGGTGTGGTAAACCACGCCCACATTGTTTCTCTTTCTCTTCTGGGAGGGG</canonical>
            <polymorphic>GGTGGCGGCGGATCCCTTTCCTCCACTTGGCGGGGCCTGAAATCACTTAATTTCGTAGAAAGAACGTTTTGAAACTTCTTAAGTCCTCTATGGTTTCATTTTAATATTACCTATGTATGTTTAAATTCAAATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTARTAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAATCGGACGGATCGTATGGGACAGGCAGATGGTGTGGTAAACCACGCCCACATTGTTTCTCTTTCTCTTCTGGGAGGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>503 161 119 72 47 32 24 22 20</canonical_bands>
                <polymorphic_bands>503 161 119 96 47 32 22 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGCTTTGTGACTTCTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>TGATAACTTTAGTTGATTGAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>AGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTARTAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCA</canonical_amplicon>
		<polymorphic_amplicon>AGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTARTAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21659</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>818779</contig_pos>
        <strand>+</strand>
        <context>TCGAAGGCTY[A/G]RTAGCCTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTT</left_flank>
        <right_flank>ATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTGGCGGCGGATCCCTTTCCTCCACTTGGCGGGGCCTGAAATCACTTAATTTCGTAGAAAGAACGTTTTGAAACTTCTTAAGTCCTCTATGGTTTCATTTTAATATTACCTATGTATGTTTAAATTCAAATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAATCGGACGGATCGTATGGGACAGGCAGATGGTGTGGTAAACCACGCCCACATTGTTTCTCTTTCTCTTCTGGGAGGG</canonical>
            <polymorphic>TGGTGGCGGCGGATCCCTTTCCTCCACTTGGCGGGGCCTGAAATCACTTAATTTCGTAGAAAGAACGTTTTGAAACTTCTTAAGTCCTCTATGGTTTCATTTTAATATTACCTATGTATGTTTAAATTCAAATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTRATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAATCGGACGGATCGTATGGGACAGGCAGATGGTGTGGTAAACCACGCCCACATTGTTTCTCTTTCTCTTCTGGGAGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 161 119 72 48 32 24 22 20</canonical_bands>
                <polymorphic_bands>502 161 119 96 48 32 22 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGCTTTGTGACTTCTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>TGATAACTTTAGTTGATTGAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>AGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTRATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCA</canonical_amplicon>
		<polymorphic_amplicon>AGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTRATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21660</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>818778</contig_pos>
        <strand>+</strand>
        <context>GTCGAAGGCT[C/T]RRTAGCCTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCT</left_flank>
        <right_flank>AATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGGTGGCGGCGGATCCCTTTCCTCCACTTGGCGGGGCCTGAAATCACTTAATTTCGTAGAAAGAACGTTTTGAAACTTCTTAAGTCCTCTATGGTTTCATTTTAATATTACCTATGTATGTTTAAATTCAAATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAATCGGACGGATCGTATGGGACAGGCAGATGGTGTGGTAAACCACGCCCACATTGTTTCTCTTTCTCTTCTGGGAGG</canonical>
            <polymorphic>GTGGTGGCGGCGGATCCCTTTCCTCCACTTGGCGGGGCCTGAAATCACTTAATTTCGTAGAAAGAACGTTTTGAAACTTCTTAAGTCCTCTATGGTTTCATTTTAATATTACCTATGTATGTTTAAATTCAAATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTYAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAATCGGACGGATCGTATGGGACAGGCAGATGGTGTGGTAAACCACGCCCACATTGTTTCTCTTTCTCTTCTGGGAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>501 161 119 72 49 32 24 22 20</canonical_bands>
                <polymorphic_bands>525 161 119 72 49 32 22 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGCTTTGTGACTTCTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>TGATAACTTTAGTTGATTGAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>AGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCA</canonical_amplicon>
		<polymorphic_amplicon>AGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTYAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21661</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>818744</contig_pos>
        <strand>+</strand>
        <context>RGCSTTTWTG[A/G]TCGAAGGCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTG</left_flank>
        <right_flank>TCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTTTACGATCAACATGACTTTTGCCGCGTCTGGTGGTGGCGGCGGATCCCTTTCCTCCACTTGGCGGGGCCTGAAATCACTTAATTTCGTAGAAAGAACGTTTTGAAACTTCTTAAGTCCTCTATGGTTTCATTTTAATATTACCTATGTATGTTTAAATTCAAATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAATCGGACGGATCGTATGGGACAGGCAGATGGTGTGGTAAACC</canonical>
            <polymorphic>TACTTTACGATCAACATGACTTTTGCCGCGTCTGGTGGTGGCGGCGGATCCCTTTCCTCCACTTGGCGGGGCCTGAAATCACTTAATTTCGTAGAAAGAACGTTTTGAAACTTCTTAAGTCCTCTATGGTTTCATTTTAATATTACCTATGTATGTTTAAATTCAAATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGRTCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAATCGGACGGATCGTATGGGACAGGCAGATGGTGTGGTAAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>468 380 72 38 34 8</canonical_bands>
                <polymorphic_bands>540 380 38 34 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTAATGTCTCTATGGTGTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>AAGCGTCTTCTGATGCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>CTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTT</canonical_amplicon>
		<polymorphic_amplicon>CTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGRTCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21662</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>818737</contig_pos>
        <strand>+</strand>
        <context>RSTTAGTRGC[C/G]TTTWTGRTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGC</left_flank>
        <right_flank>TTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTTCTTACTTTACGATCAACATGACTTTTGCCGCGTCTGGTGGTGGCGGCGGATCCCTTTCCTCCACTTGGCGGGGCCTGAAATCACTTAATTTCGTAGAAAGAACGTTTTGAAACTTCTTAAGTCCTCTATGGTTTCATTTTAATATTACCTATGTATGTTTAAATTCAAATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAATCGGACGGATCGTATGGGACAGGCAGATGGTGTG</canonical>
            <polymorphic>AAGTTCTTACTTTACGATCAACATGACTTTTGCCGCGTCTGGTGGTGGCGGCGGATCCCTTTCCTCCACTTGGCGGGGCCTGAAATCACTTAATTTCGTAGAAAGAACGTTTTGAAACTTCTTAAGTCCTCTATGGTTTCATTTTAATATTACCTATGTATGTTTAAATTCAAATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCSTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAATCGGACGGATCGTATGGGACAGGCAGATGGTGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>165 130 118 97 86 78 48 42 32 27 24 19 18 16 16 16 13 9 8 8 8 6 6 6 4</canonical_bands>
                <polymorphic_bands>165 130 118 97 86 78 64 42 32 27 24 19 18 16 16 13 9 8 8 8 6 6 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTAATGTCTCTATGGTGTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>AAGCGTCTTCTGATGCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>CTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTT</canonical_amplicon>
		<polymorphic_amplicon>CTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCSTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21663</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>818734</contig_pos>
        <strand>+</strand>
        <context>AAGRSTTAGT[A/G]GCSTTTWTGR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGT</left_flank>
        <right_flank>GCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAAGTTCTTACTTTACGATCAACATGACTTTTGCCGCGTCTGGTGGTGGCGGCGGATCCCTTTCCTCCACTTGGCGGGGCCTGAAATCACTTAATTTCGTAGAAAGAACGTTTTGAAACTTCTTAAGTCCTCTATGGTTTCATTTTAATATTACCTATGTATGTTTAAATTCAAATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAATCGGACGGATCGTATGGGACAGGCAGATGGT</canonical>
            <polymorphic>AGAAAGTTCTTACTTTACGATCAACATGACTTTTGCCGCGTCTGGTGGTGGCGGCGGATCCCTTTCCTCCACTTGGCGGGGCCTGAAATCACTTAATTTCGTAGAAAGAACGTTTTGAAACTTCTTAAGTCCTCTATGGTTTCATTTTAATATTACCTATGTATGTTTAAATTCAAATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTRGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAATCGGACGGATCGTATGGGACAGGCAGATGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>165 130 118 94 86 81 48 42 32 27 24 19 18 16 16 16 13 9 8 8 8 6 6 6 4</canonical_bands>
                <polymorphic_bands>165 130 118 94 86 81 64 42 32 27 24 19 18 16 16 13 9 8 8 8 6 6 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTAATGTCTCTATGGTGTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>AAGCGTCTTCTGATGCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>CTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTT</canonical_amplicon>
		<polymorphic_amplicon>CTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTRGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21664</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>818713</contig_pos>
        <strand>+</strand>
        <context>MCTTAGTRGC[G/T]TTTTTGGTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGC</left_flank>
        <right_flank>TTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCTATGACATTAAGAAGAAAGAAAGTTCTTACTTTACGATCAACATGACTTTTGCCGCGTCTGGTGGTGGCGGCGGATCCCTTTCCTCCACTTGGCGGGGCCTGAAATCACTTAATTTCGTAGAAAGAACGTTTTGAAACTTCTTAAGTCCTCTATGGTTTCATTTTAATATTACCTATGTATGTTTAAATTCAAATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAATCGGACGGAT</canonical>
            <polymorphic>CCTCTATGACATTAAGAAGAAAGAAAGTTCTTACTTTACGATCAACATGACTTTTGCCGCGTCTGGTGGTGGCGGCGGATCCCTTTCCTCCACTTGGCGGGGCCTGAAATCACTTAATTTCGTAGAAAGAACGTTTTGAAACTTCTTAAGTCCTCTATGGTTTCATTTTAATATTACCTATGTATGTTTAAATTCAAATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCKTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAATCGGACGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATAGCAAAGTTTCAAGGTG</pcr_primer_p1>
		<pcr_primer_p2>CGACCAAAAAGGCTATTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCG</canonical_amplicon>
		<polymorphic_amplicon>GAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCKTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21665</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>818689</contig_pos>
        <strand>+</strand>
        <context>GCTTAATGGC[C/T]TTTTTGGTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGC</left_flank>
        <right_flank>TTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTATCTGGAATCTGCCAGCGTCCCTCTATGACATTAAGAAGAAAGAAAGTTCTTACTTTACGATCAACATGACTTTTGCCGCGTCTGGTGGTGGCGGCGGATCCCTTTCCTCCACTTGGCGGGGCCTGAAATCACTTAATTTCGTAGAAAGAACGTTTTGAAACTTCTTAAGTCCTCTATGGTTTCATTTTAATATTACCTATGTATGTTTAAATTCAAATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCA</canonical>
            <polymorphic>CTCTATCTGGAATCTGCCAGCGTCCCTCTATGACATTAAGAAGAAAGAAAGTTCTTACTTTACGATCAACATGACTTTTGCCGCGTCTGGTGGTGGCGGCGGATCCCTTTCCTCCACTTGGCGGGGCCTGAAATCACTTAATTTCGTAGAAAGAACGTTTTGAAACTTCTTAAGTCCTCTATGGTTTCATTTTAATATTACCTATGTATGTTTAAATTCAAATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCYTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>358 197 169 144 126 6</canonical_bands>
                <polymorphic_bands>358 313 197 126 6</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>165 130 126 118 86 49 48 42 32 27 24 19 18 16 16 16 13 9 8 8 8 6 6 6 4</canonical_bands>
                <polymorphic_bands>165 130 126 118 86 56 49 42 32 27 24 19 18 16 16 16 13 9 8 8 6 6 6 4</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>358 323 175 144</canonical_bands>
                <polymorphic_bands>358 323 319</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATAGCAAAGTTTCAAGGTG</pcr_primer_p1>
		<pcr_primer_p2>CGACCAAAAAGGCTATTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCG</canonical_amplicon>
		<polymorphic_amplicon>GAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCYTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21667</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>921718</contig_pos>
        <strand>+</strand>
        <context>TTTTCTTTTT[C/T]AGTTTTTCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTCAAACAAAATATATTCAATTCCCTTATTATTCGTGTTTTCTTTTT</left_flank>
        <right_flank>AGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGTTAAAAAAAGTAACTTCAAGCTTTTTTTTTCAGGTTGATGAAGAATGTGAGTGGCAAGCAAAACCAATATCAGCGACATCTTCCACCGACTCTTTTCTTTCACATGCGGAAGAGATTAGCACTTCGGAGCAGCCAACAACTTCTACGGAAGCTTCGACCGAGAAAGAGAATGGGCTGCCACCAAGATATGACACAAAAAGCTTGCGATCTCGCTACTCTCATTCGTACTTGACGACGCCGGCATGCTATGCGGAGAACCCAAGACGAGGTGCTGGAGAGGGACCTGTGAATTATGCGAACGACTCAACTCTGCCAATCTATTTCTAATTTTTATTGTTATGATCTTCTCGAAAACCTACACTGATCTGAAAACCGTTCTTGTTTAATTTGTTTTCTGTTATTTTTGAATTATTCTCTGTGTTTAACTTCTTGTCAATTTACGTTTTTTTCAAACAAAATATATTCAATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAAGAAAAAAAGAAAAAGAAAATCACAGTGCTCGAGGATTCACAAATTTTTTAGGATTCGAGTCGTAGTTGCAACCATTGGTATAGCATATACAGTGAATCGATGCGTCTTTCTTTGCCTGTAATCCACACAGTAACAAAACAGAACCATCTTCAAAAACTCACATGCGAATAGCAACCTGTATAAGATATCGGTGGTTTACCGACACCACCGTGGTAGAGAGATCGTCGTGACGTCAATTCGGTAGAAGTGATACAGTAATCAAAACCGTACTCCATTGCTACATA</canonical>
            <polymorphic>TTTTGTTAAAAAAAGTAACTTCAAGCTTTTTTTTTCAGGTTGATGAAGAATGTGAGTGGCAAGCAAAACCAATATCAGCGACATCTTCCACCGACTCTTTTCTTTCACATGCGGAAGAGATTAGCACTTCGGAGCAGCCAACAACTTCTACGGAAGCTTCGACCGAGAAAGAGAATGGGCTGCCACCAAGATATGACACAAAAAGCTTGCGATCTCGCTACTCTCATTCGTACTTGACGACGCCGGCATGCTATGCGGAGAACCCAAGACGAGGTGCTGGAGAGGGACCTGTGAATTATGCGAACGACTCAACTCTGCCAATCTATTTCTAATTTTTATTGTTATGATCTTCTCGAAAACCTACACTGATCTGAAAACCGTTCTTGTTTAATTTGTTTTCTGTTATTTTTGAATTATTCTCTGTGTTTAACTTCTTGTCAATTTACGTTTTTTTCAAACAAAATATATTCAATTCCCTTATTATTCGTGTTTTCTTTTTYAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAAGAAAAAAAGAAAAAGAAAATCACAGTGCTCGAGGATTCACAAATTTTTTAGGATTCGAGTCGTAGTTGCAACCATTGGTATAGCATATACAGTGAATCGATGCGTCTTTCTTTGCCTGTAATCCACACAGTAACAAAACAGAACCATCTTCAAAAACTCACATGCGAATAGCAACCTGTATAAGATATCGGTGGTTTACCGACACCACCGTGGTAGAGAGATCGTCGTGACGTCAATTCGGTAGAAGTGATACAGTAATCAAAACCGTACTCCATTGCTACATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATGATCTTCTCGAAAACCTAC</pcr_primer_p1>
		<pcr_primer_p2>TGTCTTTTCCCTCTTGTTTATG</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTATGATCTTCTCGAAAACCTACACTGATCTGAAAACCGTTCTTGTTTAATTTGTTTTCTGTTATTTTTGAATTATTCTCTGTGTTTAACTTCTTGTCAATTTACGTTTTTTTCAAACAAAATATATTCAATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACA</canonical_amplicon>
		<polymorphic_amplicon>TTATGATCTTCTCGAAAACCTACACTGATCTGAAAACCGTTCTTGTTTAATTTGTTTTCTGTTATTTTTGAATTATTCTCTGTGTTTAACTTCTTGTCAATTTACGTTTTTTTCAAACAAAATATATTCAATTCCCTTATTATTCGTGTTTTCTTTTTYAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21668</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>921735</contig_pos>
        <strand>+</strand>
        <context>TCAAGGTTCT[C/T]CGTTTTCATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCAATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCT</left_flank>
        <right_flank>CGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTCAAGCTTTTTTTTTCAGGTTGATGAAGAATGTGAGTGGCAAGCAAAACCAATATCAGCGACATCTTCCACCGACTCTTTTCTTTCACATGCGGAAGAGATTAGCACTTCGGAGCAGCCAACAACTTCTACGGAAGCTTCGACCGAGAAAGAGAATGGGCTGCCACCAAGATATGACACAAAAAGCTTGCGATCTCGCTACTCTCATTCGTACTTGACGACGCCGGCATGCTATGCGGAGAACCCAAGACGAGGTGCTGGAGAGGGACCTGTGAATTATGCGAACGACTCAACTCTGCCAATCTATTTCTAATTTTTATTGTTATGATCTTCTCGAAAACCTACACTGATCTGAAAACCGTTCTTGTTTAATTTGTTTTCTGTTATTTTTGAATTATTCTCTGTGTTTAACTTCTTGTCAATTTACGTTTTTTTCAAACAAAATATATTCAATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAAGAAAAAAAGAAAAAGAAAATCACAGTGCTCGAGGATTCACAAATTTTTTAGGATTCGAGTCGTAGTTGCAACCATTGGTATAGCATATACAGTGAATCGATGCGTCTTTCTTTGCCTGTAATCCACACAGTAACAAAACAGAACCATCTTCAAAAACTCACATGCGAATAGCAACCTGTATAAGATATCGGTGGTTTACCGACACCACCGTGGTAGAGAGATCGTCGTGACGTCAATTCGGTAGAAGTGATACAGTAATCAAAACCGTACTCCATTGCTACATATTCGCGTTGGATTCCAA</canonical>
            <polymorphic>ACTTCAAGCTTTTTTTTTCAGGTTGATGAAGAATGTGAGTGGCAAGCAAAACCAATATCAGCGACATCTTCCACCGACTCTTTTCTTTCACATGCGGAAGAGATTAGCACTTCGGAGCAGCCAACAACTTCTACGGAAGCTTCGACCGAGAAAGAGAATGGGCTGCCACCAAGATATGACACAAAAAGCTTGCGATCTCGCTACTCTCATTCGTACTTGACGACGCCGGCATGCTATGCGGAGAACCCAAGACGAGGTGCTGGAGAGGGACCTGTGAATTATGCGAACGACTCAACTCTGCCAATCTATTTCTAATTTTTATTGTTATGATCTTCTCGAAAACCTACACTGATCTGAAAACCGTTCTTGTTTAATTTGTTTTCTGTTATTTTTGAATTATTCTCTGTGTTTAACTTCTTGTCAATTTACGTTTTTTTCAAACAAAATATATTCAATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTYCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAAGAAAAAAAGAAAAAGAAAATCACAGTGCTCGAGGATTCACAAATTTTTTAGGATTCGAGTCGTAGTTGCAACCATTGGTATAGCATATACAGTGAATCGATGCGTCTTTCTTTGCCTGTAATCCACACAGTAACAAAACAGAACCATCTTCAAAAACTCACATGCGAATAGCAACCTGTATAAGATATCGGTGGTTTACCGACACCACCGTGGTAGAGAGATCGTCGTGACGTCAATTCGGTAGAAGTGATACAGTAATCAAAACCGTACTCCATTGCTACATATTCGCGTTGGATTCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATGATCTTCTCGAAAACCTAC</pcr_primer_p1>
		<pcr_primer_p2>TGTCTTTTCCCTCTTGTTTATG</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTATGATCTTCTCGAAAACCTACACTGATCTGAAAACCGTTCTTGTTTAATTTGTTTTCTGTTATTTTTGAATTATTCTCTGTGTTTAACTTCTTGTCAATTTACGTTTTTTTCAAACAAAATATATTCAATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACA</canonical_amplicon>
		<polymorphic_amplicon>TTATGATCTTCTCGAAAACCTACACTGATCTGAAAACCGTTCTTGTTTAATTTGTTTTCTGTTATTTTTGAATTATTCTCTGTGTTTAACTTCTTGTCAATTTACGTTTTTTTCAAACAAAATATATTCAATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTYCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21669</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>921759</contig_pos>
        <strand>+</strand>
        <context>TCTGCCTACA[C/T]ACGGAAAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACA</left_flank>
        <right_flank>ACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGAAGAATGTGAGTGGCAAGCAAAACCAATATCAGCGACATCTTCCACCGACTCTTTTCTTTCACATGCGGAAGAGATTAGCACTTCGGAGCAGCCAACAACTTCTACGGAAGCTTCGACCGAGAAAGAGAATGGGCTGCCACCAAGATATGACACAAAAAGCTTGCGATCTCGCTACTCTCATTCGTACTTGACGACGCCGGCATGCTATGCGGAGAACCCAAGACGAGGTGCTGGAGAGGGACCTGTGAATTATGCGAACGACTCAACTCTGCCAATCTATTTCTAATTTTTATTGTTATGATCTTCTCGAAAACCTACACTGATCTGAAAACCGTTCTTGTTTAATTTGTTTTCTGTTATTTTTGAATTATTCTCTGTGTTTAACTTCTTGTCAATTTACGTTTTTTTCAAACAAAATATATTCAATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAAGAAAAAAAGAAAAAGAAAATCACAGTGCTCGAGGATTCACAAATTTTTTAGGATTCGAGTCGTAGTTGCAACCATTGGTATAGCATATACAGTGAATCGATGCGTCTTTCTTTGCCTGTAATCCACACAGTAACAAAACAGAACCATCTTCAAAAACTCACATGCGAATAGCAACCTGTATAAGATATCGGTGGTTTACCGACACCACCGTGGTAGAGAGATCGTCGTGACGTCAATTCGGTAGAAGTGATACAGTAATCAAAACCGTACTCCATTGCTACATATTCGCGTTGGATTCCAACCATACACTCGAGGACGCCGGTGG</canonical>
            <polymorphic>GATGAAGAATGTGAGTGGCAAGCAAAACCAATATCAGCGACATCTTCCACCGACTCTTTTCTTTCACATGCGGAAGAGATTAGCACTTCGGAGCAGCCAACAACTTCTACGGAAGCTTCGACCGAGAAAGAGAATGGGCTGCCACCAAGATATGACACAAAAAGCTTGCGATCTCGCTACTCTCATTCGTACTTGACGACGCCGGCATGCTATGCGGAGAACCCAAGACGAGGTGCTGGAGAGGGACCTGTGAATTATGCGAACGACTCAACTCTGCCAATCTATTTCTAATTTTTATTGTTATGATCTTCTCGAAAACCTACACTGATCTGAAAACCGTTCTTGTTTAATTTGTTTTCTGTTATTTTTGAATTATTCTCTGTGTTTAACTTCTTGTCAATTTACGTTTTTTTCAAACAAAATATATTCAATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACAYACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAAGAAAAAAAGAAAAAGAAAATCACAGTGCTCGAGGATTCACAAATTTTTTAGGATTCGAGTCGTAGTTGCAACCATTGGTATAGCATATACAGTGAATCGATGCGTCTTTCTTTGCCTGTAATCCACACAGTAACAAAACAGAACCATCTTCAAAAACTCACATGCGAATAGCAACCTGTATAAGATATCGGTGGTTTACCGACACCACCGTGGTAGAGAGATCGTCGTGACGTCAATTCGGTAGAAGTGATACAGTAATCAAAACCGTACTCCATTGCTACATATTCGCGTTGGATTCCAACCATACACTCGAGGACGCCGGTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>145 78 72 64 60 59 59 55 51 35 33 33 32 31 20 19 17 17 17 16 16 13 13 12 11 5 5 4 3 2 2 1</canonical_bands>
                <polymorphic_bands>145 78 72 69 64 60 59 59 55 35 33 33 32 31 20 19 17 17 17 16 13 13 12 11 5 5 4 3 2 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTCCCTTATTATTCGTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTATGCAGTTACAAAACTCTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAA</canonical_amplicon>
		<polymorphic_amplicon>AATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACAYACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21670</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>921802</contig_pos>
        <strand>+</strand>
        <context>GAAAAGACAT[A/T]AAAATAGTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACAT</left_flank>
        <right_flank>AAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCCACCGACTCTTTTCTTTCACATGCGGAAGAGATTAGCACTTCGGAGCAGCCAACAACTTCTACGGAAGCTTCGACCGAGAAAGAGAATGGGCTGCCACCAAGATATGACACAAAAAGCTTGCGATCTCGCTACTCTCATTCGTACTTGACGACGCCGGCATGCTATGCGGAGAACCCAAGACGAGGTGCTGGAGAGGGACCTGTGAATTATGCGAACGACTCAACTCTGCCAATCTATTTCTAATTTTTATTGTTATGATCTTCTCGAAAACCTACACTGATCTGAAAACCGTTCTTGTTTAATTTGTTTTCTGTTATTTTTGAATTATTCTCTGTGTTTAACTTCTTGTCAATTTACGTTTTTTTCAAACAAAATATATTCAATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAAGAAAAAAAGAAAAAGAAAATCACAGTGCTCGAGGATTCACAAATTTTTTAGGATTCGAGTCGTAGTTGCAACCATTGGTATAGCATATACAGTGAATCGATGCGTCTTTCTTTGCCTGTAATCCACACAGTAACAAAACAGAACCATCTTCAAAAACTCACATGCGAATAGCAACCTGTATAAGATATCGGTGGTTTACCGACACCACCGTGGTAGAGAGATCGTCGTGACGTCAATTCGGTAGAAGTGATACAGTAATCAAAACCGTACTCCATTGCTACATATTCGCGTTGGATTCCAACCATACACTCGAGGACGCCGGTGGTGGTAGCTGATAGACATGCTACGATGACAAAGTGAGTAAAGAG</canonical>
            <polymorphic>CTTCCACCGACTCTTTTCTTTCACATGCGGAAGAGATTAGCACTTCGGAGCAGCCAACAACTTCTACGGAAGCTTCGACCGAGAAAGAGAATGGGCTGCCACCAAGATATGACACAAAAAGCTTGCGATCTCGCTACTCTCATTCGTACTTGACGACGCCGGCATGCTATGCGGAGAACCCAAGACGAGGTGCTGGAGAGGGACCTGTGAATTATGCGAACGACTCAACTCTGCCAATCTATTTCTAATTTTTATTGTTATGATCTTCTCGAAAACCTACACTGATCTGAAAACCGTTCTTGTTTAATTTGTTTTCTGTTATTTTTGAATTATTCTCTGTGTTTAACTTCTTGTCAATTTACGTTTTTTTCAAACAAAATATATTCAATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATWAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAAGAAAAAAAGAAAAAGAAAATCACAGTGCTCGAGGATTCACAAATTTTTTAGGATTCGAGTCGTAGTTGCAACCATTGGTATAGCATATACAGTGAATCGATGCGTCTTTCTTTGCCTGTAATCCACACAGTAACAAAACAGAACCATCTTCAAAAACTCACATGCGAATAGCAACCTGTATAAGATATCGGTGGTTTACCGACACCACCGTGGTAGAGAGATCGTCGTGACGTCAATTCGGTAGAAGTGATACAGTAATCAAAACCGTACTCCATTGCTACATATTCGCGTTGGATTCCAACCATACACTCGAGGACGCCGGTGGTGGTAGCTGATAGACATGCTACGATGACAAAGTGAGTAAAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCCCTTATTATTCGTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTATGCAGTTACAAAACTCTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAA</canonical_amplicon>
		<polymorphic_amplicon>AATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATWAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21671</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>921816</contig_pos>
        <strand>+</strand>
        <context>ATAGTGTAAA[A/C]GATGATCCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAA</left_flank>
        <right_flank>GATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTTTCACATGCGGAAGAGATTAGCACTTCGGAGCAGCCAACAACTTCTACGGAAGCTTCGACCGAGAAAGAGAATGGGCTGCCACCAAGATATGACACAAAAAGCTTGCGATCTCGCTACTCTCATTCGTACTTGACGACGCCGGCATGCTATGCGGAGAACCCAAGACGAGGTGCTGGAGAGGGACCTGTGAATTATGCGAACGACTCAACTCTGCCAATCTATTTCTAATTTTTATTGTTATGATCTTCTCGAAAACCTACACTGATCTGAAAACCGTTCTTGTTTAATTTGTTTTCTGTTATTTTTGAATTATTCTCTGTGTTTAACTTCTTGTCAATTTACGTTTTTTTCAAACAAAATATATTCAATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAAGAAAAAAAGAAAAAGAAAATCACAGTGCTCGAGGATTCACAAATTTTTTAGGATTCGAGTCGTAGTTGCAACCATTGGTATAGCATATACAGTGAATCGATGCGTCTTTCTTTGCCTGTAATCCACACAGTAACAAAACAGAACCATCTTCAAAAACTCACATGCGAATAGCAACCTGTATAAGATATCGGTGGTTTACCGACACCACCGTGGTAGAGAGATCGTCGTGACGTCAATTCGGTAGAAGTGATACAGTAATCAAAACCGTACTCCATTGCTACATATTCGCGTTGGATTCCAACCATACACTCGAGGACGCCGGTGGTGGTAGCTGATAGACATGCTACGATGACAAAGTGAGTAAAGAGGAGCATCGTTGGTT</canonical>
            <polymorphic>TTTCTTTCACATGCGGAAGAGATTAGCACTTCGGAGCAGCCAACAACTTCTACGGAAGCTTCGACCGAGAAAGAGAATGGGCTGCCACCAAGATATGACACAAAAAGCTTGCGATCTCGCTACTCTCATTCGTACTTGACGACGCCGGCATGCTATGCGGAGAACCCAAGACGAGGTGCTGGAGAGGGACCTGTGAATTATGCGAACGACTCAACTCTGCCAATCTATTTCTAATTTTTATTGTTATGATCTTCTCGAAAACCTACACTGATCTGAAAACCGTTCTTGTTTAATTTGTTTTCTGTTATTTTTGAATTATTCTCTGTGTTTAACTTCTTGTCAATTTACGTTTTTTTCAAACAAAATATATTCAATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAMGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAAGAAAAAAAGAAAAAGAAAATCACAGTGCTCGAGGATTCACAAATTTTTTAGGATTCGAGTCGTAGTTGCAACCATTGGTATAGCATATACAGTGAATCGATGCGTCTTTCTTTGCCTGTAATCCACACAGTAACAAAACAGAACCATCTTCAAAAACTCACATGCGAATAGCAACCTGTATAAGATATCGGTGGTTTACCGACACCACCGTGGTAGAGAGATCGTCGTGACGTCAATTCGGTAGAAGTGATACAGTAATCAAAACCGTACTCCATTGCTACATATTCGCGTTGGATTCCAACCATACACTCGAGGACGCCGGTGGTGGTAGCTGATAGACATGCTACGATGACAAAGTGAGTAAAGAGGAGCATCGTTGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCCCTTATTATTCGTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTATGCAGTTACAAAACTCTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAA</canonical_amplicon>
		<polymorphic_amplicon>AATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAMGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21672</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>921836</contig_pos>
        <strand>+</strand>
        <context>ACGTAACGGT[C/T]GGGYCTTGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGT</left_flank>
        <right_flank>GGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTAGCACTTCGGAGCAGCCAACAACTTCTACGGAAGCTTCGACCGAGAAAGAGAATGGGCTGCCACCAAGATATGACACAAAAAGCTTGCGATCTCGCTACTCTCATTCGTACTTGACGACGCCGGCATGCTATGCGGAGAACCCAAGACGAGGTGCTGGAGAGGGACCTGTGAATTATGCGAACGACTCAACTCTGCCAATCTATTTCTAATTTTTATTGTTATGATCTTCTCGAAAACCTACACTGATCTGAAAACCGTTCTTGTTTAATTTGTTTTCTGTTATTTTTGAATTATTCTCTGTGTTTAACTTCTTGTCAATTTACGTTTTTTTCAAACAAAATATATTCAATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAAGAAAAAAAGAAAAAGAAAATCACAGTGCTCGAGGATTCACAAATTTTTTAGGATTCGAGTCGTAGTTGCAACCATTGGTATAGCATATACAGTGAATCGATGCGTCTTTCTTTGCCTGTAATCCACACAGTAACAAAACAGAACCATCTTCAAAAACTCACATGCGAATAGCAACCTGTATAAGATATCGGTGGTTTACCGACACCACCGTGGTAGAGAGATCGTCGTGACGTCAATTCGGTAGAAGTGATACAGTAATCAAAACCGTACTCCATTGCTACATATTCGCGTTGGATTCCAACCATACACTCGAGGACGCCGGTGGTGGTAGCTGATAGACATGCTACGATGACAAAGTGAGTAAAGAGGAGCATCGTTGGTTTGGATGCAGAGAGCCTGGAA</canonical>
            <polymorphic>GATTAGCACTTCGGAGCAGCCAACAACTTCTACGGAAGCTTCGACCGAGAAAGAGAATGGGCTGCCACCAAGATATGACACAAAAAGCTTGCGATCTCGCTACTCTCATTCGTACTTGACGACGCCGGCATGCTATGCGGAGAACCCAAGACGAGGTGCTGGAGAGGGACCTGTGAATTATGCGAACGACTCAACTCTGCCAATCTATTTCTAATTTTTATTGTTATGATCTTCTCGAAAACCTACACTGATCTGAAAACCGTTCTTGTTTAATTTGTTTTCTGTTATTTTTGAATTATTCTCTGTGTTTAACTTCTTGTCAATTTACGTTTTTTTCAAACAAAATATATTCAATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTYGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAAGAAAAAAAGAAAAAGAAAATCACAGTGCTCGAGGATTCACAAATTTTTTAGGATTCGAGTCGTAGTTGCAACCATTGGTATAGCATATACAGTGAATCGATGCGTCTTTCTTTGCCTGTAATCCACACAGTAACAAAACAGAACCATCTTCAAAAACTCACATGCGAATAGCAACCTGTATAAGATATCGGTGGTTTACCGACACCACCGTGGTAGAGAGATCGTCGTGACGTCAATTCGGTAGAAGTGATACAGTAATCAAAACCGTACTCCATTGCTACATATTCGCGTTGGATTCCAACCATACACTCGAGGACGCCGGTGGTGGTAGCTGATAGACATGCTACGATGACAAAGTGAGTAAAGAGGAGCATCGTTGGTTTGGATGCAGAGAGCCTGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNNNNGTC</site>
                <isoschizomers>
                    <enzyme>AasI</enzyme>
                    <enzyme>DrdI</enzyme>
                    <enzyme>DseDI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>501 454 45</canonical_bands>
                <polymorphic_bands>955 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTCCCTTATTATTCGTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTATGCAGTTACAAAACTCTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAA</canonical_amplicon>
		<polymorphic_amplicon>AATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTYGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21673</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>921840</contig_pos>
        <strand>+</strand>
        <context>AACGGTYGGG[C/T]CTTGTTTAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGG</left_flank>
        <right_flank>CTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCACTTCGGAGCAGCCAACAACTTCTACGGAAGCTTCGACCGAGAAAGAGAATGGGCTGCCACCAAGATATGACACAAAAAGCTTGCGATCTCGCTACTCTCATTCGTACTTGACGACGCCGGCATGCTATGCGGAGAACCCAAGACGAGGTGCTGGAGAGGGACCTGTGAATTATGCGAACGACTCAACTCTGCCAATCTATTTCTAATTTTTATTGTTATGATCTTCTCGAAAACCTACACTGATCTGAAAACCGTTCTTGTTTAATTTGTTTTCTGTTATTTTTGAATTATTCTCTGTGTTTAACTTCTTGTCAATTTACGTTTTTTTCAAACAAAATATATTCAATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAAGAAAAAAAGAAAAAGAAAATCACAGTGCTCGAGGATTCACAAATTTTTTAGGATTCGAGTCGTAGTTGCAACCATTGGTATAGCATATACAGTGAATCGATGCGTCTTTCTTTGCCTGTAATCCACACAGTAACAAAACAGAACCATCTTCAAAAACTCACATGCGAATAGCAACCTGTATAAGATATCGGTGGTTTACCGACACCACCGTGGTAGAGAGATCGTCGTGACGTCAATTCGGTAGAAGTGATACAGTAATCAAAACCGTACTCCATTGCTACATATTCGCGTTGGATTCCAACCATACACTCGAGGACGCCGGTGGTGGTAGCTGATAGACATGCTACGATGACAAAGTGAGTAAAGAGGAGCATCGTTGGTTTGGATGCAGAGAGCCTGGAAGCAA</canonical>
            <polymorphic>AGCACTTCGGAGCAGCCAACAACTTCTACGGAAGCTTCGACCGAGAAAGAGAATGGGCTGCCACCAAGATATGACACAAAAAGCTTGCGATCTCGCTACTCTCATTCGTACTTGACGACGCCGGCATGCTATGCGGAGAACCCAAGACGAGGTGCTGGAGAGGGACCTGTGAATTATGCGAACGACTCAACTCTGCCAATCTATTTCTAATTTTTATTGTTATGATCTTCTCGAAAACCTACACTGATCTGAAAACCGTTCTTGTTTAATTTGTTTTCTGTTATTTTTGAATTATTCTCTGTGTTTAACTTCTTGTCAATTTACGTTTTTTTCAAACAAAATATATTCAATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGYCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAAGAAAAAAAGAAAAAGAAAATCACAGTGCTCGAGGATTCACAAATTTTTTAGGATTCGAGTCGTAGTTGCAACCATTGGTATAGCATATACAGTGAATCGATGCGTCTTTCTTTGCCTGTAATCCACACAGTAACAAAACAGAACCATCTTCAAAAACTCACATGCGAATAGCAACCTGTATAAGATATCGGTGGTTTACCGACACCACCGTGGTAGAGAGATCGTCGTGACGTCAATTCGGTAGAAGTGATACAGTAATCAAAACCGTACTCCATTGCTACATATTCGCGTTGGATTCCAACCATACACTCGAGGACGCCGGTGGTGGTAGCTGATAGACATGCTACGATGACAAAGTGAGTAAAGAGGAGCATCGTTGGTTTGGATGCAGAGAGCCTGGAAGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCCCTTATTATTCGTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTATGCAGTTACAAAACTCTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAA</canonical_amplicon>
		<polymorphic_amplicon>AATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGYCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21674</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>921873</contig_pos>
        <strand>+</strand>
        <context>CGGAGGGTTA[A/C]GGAAAAAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTA</left_flank>
        <right_flank>GGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTTCGACCGAGAAAGAGAATGGGCTGCCACCAAGATATGACACAAAAAGCTTGCGATCTCGCTACTCTCATTCGTACTTGACGACGCCGGCATGCTATGCGGAGAACCCAAGACGAGGTGCTGGAGAGGGACCTGTGAATTATGCGAACGACTCAACTCTGCCAATCTATTTCTAATTTTTATTGTTATGATCTTCTCGAAAACCTACACTGATCTGAAAACCGTTCTTGTTTAATTTGTTTTCTGTTATTTTTGAATTATTCTCTGTGTTTAACTTCTTGTCAATTTACGTTTTTTTCAAACAAAATATATTCAATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAAGAAAAAAAGAAAAAGAAAATCACAGTGCTCGAGGATTCACAAATTTTTTAGGATTCGAGTCGTAGTTGCAACCATTGGTATAGCATATACAGTGAATCGATGCGTCTTTCTTTGCCTGTAATCCACACAGTAACAAAACAGAACCATCTTCAAAAACTCACATGCGAATAGCAACCTGTATAAGATATCGGTGGTTTACCGACACCACCGTGGTAGAGAGATCGTCGTGACGTCAATTCGGTAGAAGTGATACAGTAATCAAAACCGTACTCCATTGCTACATATTCGCGTTGGATTCCAACCATACACTCGAGGACGCCGGTGGTGGTAGCTGATAGACATGCTACGATGACAAAGTGAGTAAAGAGGAGCATCGTTGGTTTGGATGCAGAGAGCCTGGAAGCAATCATTTTCCCGTTTTTCAACGGCTATTTCGAGC</canonical>
            <polymorphic>GCTTCGACCGAGAAAGAGAATGGGCTGCCACCAAGATATGACACAAAAAGCTTGCGATCTCGCTACTCTCATTCGTACTTGACGACGCCGGCATGCTATGCGGAGAACCCAAGACGAGGTGCTGGAGAGGGACCTGTGAATTATGCGAACGACTCAACTCTGCCAATCTATTTCTAATTTTTATTGTTATGATCTTCTCGAAAACCTACACTGATCTGAAAACCGTTCTTGTTTAATTTGTTTTCTGTTATTTTTGAATTATTCTCTGTGTTTAACTTCTTGTCAATTTACGTTTTTTTCAAACAAAATATATTCAATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTAMGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAAGAAAAAAAGAAAAAGAAAATCACAGTGCTCGAGGATTCACAAATTTTTTAGGATTCGAGTCGTAGTTGCAACCATTGGTATAGCATATACAGTGAATCGATGCGTCTTTCTTTGCCTGTAATCCACACAGTAACAAAACAGAACCATCTTCAAAAACTCACATGCGAATAGCAACCTGTATAAGATATCGGTGGTTTACCGACACCACCGTGGTAGAGAGATCGTCGTGACGTCAATTCGGTAGAAGTGATACAGTAATCAAAACCGTACTCCATTGCTACATATTCGCGTTGGATTCCAACCATACACTCGAGGACGCCGGTGGTGGTAGCTGATAGACATGCTACGATGACAAAGTGAGTAAAGAGGAGCATCGTTGGTTTGGATGCAGAGAGCCTGGAAGCAATCATTTTCCCGTTTTTCAACGGCTATTTCGAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>454 213 144 97 51 41</canonical_bands>
                <polymorphic_bands>454 213 144 97 92</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTCCCTTATTATTCGTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTATGCAGTTACAAAACTCTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAA</canonical_amplicon>
		<polymorphic_amplicon>AATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTAMGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21675</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>921898</contig_pos>
        <strand>+</strand>
        <context>AGTTCAGTAA[A/T]TACCCAAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAA</left_flank>
        <right_flank>TACCCAAAACTGGAGAGTTTTGTAACTGCATACAAAGAAAAAAAGAAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCCACCAAGATATGACACAAAAAGCTTGCGATCTCGCTACTCTCATTCGTACTTGACGACGCCGGCATGCTATGCGGAGAACCCAAGACGAGGTGCTGGAGAGGGACCTGTGAATTATGCGAACGACTCAACTCTGCCAATCTATTTCTAATTTTTATTGTTATGATCTTCTCGAAAACCTACACTGATCTGAAAACCGTTCTTGTTTAATTTGTTTTCTGTTATTTTTGAATTATTCTCTGTGTTTAACTTCTTGTCAATTTACGTTTTTTTCAAACAAAATATATTCAATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAAGAAAAAAAGAAAAAGAAAATCACAGTGCTCGAGGATTCACAAATTTTTTAGGATTCGAGTCGTAGTTGCAACCATTGGTATAGCATATACAGTGAATCGATGCGTCTTTCTTTGCCTGTAATCCACACAGTAACAAAACAGAACCATCTTCAAAAACTCACATGCGAATAGCAACCTGTATAAGATATCGGTGGTTTACCGACACCACCGTGGTAGAGAGATCGTCGTGACGTCAATTCGGTAGAAGTGATACAGTAATCAAAACCGTACTCCATTGCTACATATTCGCGTTGGATTCCAACCATACACTCGAGGACGCCGGTGGTGGTAGCTGATAGACATGCTACGATGACAAAGTGAGTAAAGAGGAGCATCGTTGGTTTGGATGCAGAGAGCCTGGAAGCAATCATTTTCCCGTTTTTCAACGGCTATTTCGAGCAGATGCAATATTTTCTAACTTTCGA</canonical>
            <polymorphic>TGCCACCAAGATATGACACAAAAAGCTTGCGATCTCGCTACTCTCATTCGTACTTGACGACGCCGGCATGCTATGCGGAGAACCCAAGACGAGGTGCTGGAGAGGGACCTGTGAATTATGCGAACGACTCAACTCTGCCAATCTATTTCTAATTTTTATTGTTATGATCTTCTCGAAAACCTACACTGATCTGAAAACCGTTCTTGTTTAATTTGTTTTCTGTTATTTTTGAATTATTCTCTGTGTTTAACTTCTTGTCAATTTACGTTTTTTTCAAACAAAATATATTCAATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAWTACCCAAAACTGGAGAGTTTTGTAACTGCATACAAAGAAAAAAAGAAAAAGAAAATCACAGTGCTCGAGGATTCACAAATTTTTTAGGATTCGAGTCGTAGTTGCAACCATTGGTATAGCATATACAGTGAATCGATGCGTCTTTCTTTGCCTGTAATCCACACAGTAACAAAACAGAACCATCTTCAAAAACTCACATGCGAATAGCAACCTGTATAAGATATCGGTGGTTTACCGACACCACCGTGGTAGAGAGATCGTCGTGACGTCAATTCGGTAGAAGTGATACAGTAATCAAAACCGTACTCCATTGCTACATATTCGCGTTGGATTCCAACCATACACTCGAGGACGCCGGTGGTGGTAGCTGATAGACATGCTACGATGACAAAGTGAGTAAAGAGGAGCATCGTTGGTTTGGATGCAGAGAGCCTGGAAGCAATCATTTTCCCGTTTTTCAACGGCTATTTCGAGCAGATGCAATATTTTCTAACTTTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAAAGAGTGCGCATAA</pcr_primer_p1>
		<pcr_primer_p2>AATGGTTGCAACTACGACTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAAGAAAAAAAGAAAAAGAAAATCACAGTGCTCGAGGATTCACAAATTTTTTAGGATTCGAGTCGTAGTTGCAACCATT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAWTACCCAAAACTGGAGAGTTTTGTAACTGCATACAAAGAAAAAAAGAAAAAGAAAATCACAGTGCTCGAGGATTCACAAATTTTTTAGGATTCGAGTCGTAGTTGCAACCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21676</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>922116</contig_pos>
        <strand>+</strand>
        <context>CAACCTGTAT[A/G]AGATATCGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACAAAACAGAACCATCTTCAAAAACTCACATGCGAATAGCAACCTGTAT</left_flank>
        <right_flank>AGATATCGGTGGTTTACCGACACCACCGTGGTAGAGAGATCGTCGTGACG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGTTATTTTTGAATTATTCTCTGTGTTTAACTTCTTGTCAATTTACGTTTTTTTCAAACAAAATATATTCAATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAAGAAAAAAAGAAAAAGAAAATCACAGTGCTCGAGGATTCACAAATTTTTTAGGATTCGAGTCGTAGTTGCAACCATTGGTATAGCATATACAGTGAATCGATGCGTCTTTCTTTGCCTGTAATCCACACAGTAACAAAACAGAACCATCTTCAAAAACTCACATGCGAATAGCAACCTGTATAAGATATCGGTGGTTTACCGACACCACCGTGGTAGAGAGATCGTCGTGACGTCAATTCGGTAGAAGTGATACAGTAATCAAAACCGTACTCCATTGCTACATATTCGCGTTGGATTCCAACCATACACTCGAGGACGCCGGTGGTGGTAGCTGATAGACATGCTACGATGACAAAGTGAGTAAAGAGGAGCATCGTTGGTTTGGATGCAGAGAGCCTGGAAGCAATCATTTTCCCGTTTTTCAACGGCTATTTCGAGCAGATGCAATATTTTCTAACTTTCGAAATGTGATAACGTTTATATGAAAAAAAAAGATCTAGAGAAATATGAAAACCTTTATGCAGTTTTGAATTTTCAAATATTGAATGATTTAGTCGGTGCTCAGAATGCAAATACGTCATTCGAAATCCGCGGCTAACAAAAAAAAAACCTATTCAAAAAAATACAAGTAACATCATTATGAACTTGAAACTTACAGAAAAAAAAATATTGCGAGATATTT</canonical>
            <polymorphic>TCTGTTATTTTTGAATTATTCTCTGTGTTTAACTTCTTGTCAATTTACGTTTTTTTCAAACAAAATATATTCAATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAAGAAAAAAAGAAAAAGAAAATCACAGTGCTCGAGGATTCACAAATTTTTTAGGATTCGAGTCGTAGTTGCAACCATTGGTATAGCATATACAGTGAATCGATGCGTCTTTCTTTGCCTGTAATCCACACAGTAACAAAACAGAACCATCTTCAAAAACTCACATGCGAATAGCAACCTGTATRAGATATCGGTGGTTTACCGACACCACCGTGGTAGAGAGATCGTCGTGACGTCAATTCGGTAGAAGTGATACAGTAATCAAAACCGTACTCCATTGCTACATATTCGCGTTGGATTCCAACCATACACTCGAGGACGCCGGTGGTGGTAGCTGATAGACATGCTACGATGACAAAGTGAGTAAAGAGGAGCATCGTTGGTTTGGATGCAGAGAGCCTGGAAGCAATCATTTTCCCGTTTTTCAACGGCTATTTCGAGCAGATGCAATATTTTCTAACTTTCGAAATGTGATAACGTTTATATGAAAAAAAAAGATCTAGAGAAATATGAAAACCTTTATGCAGTTTTGAATTTTCAAATATTGAATGATTTAGTCGGTGCTCAGAATGCAAATACGTCATTCGAAATCCGCGGCTAACAAAAAAAAAACCTATTCAAAAAAATACAAGTAACATCATTATGAACTTGAAACTTACAGAAAAAAAAATATTGCGAGATATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTAATCCACACAGTAACAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACTCACTTTGTCATCGTAGCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTGTAATCCACACAGTAACAAAACAGAACCATCTTCAAAAACTCACATGCGAATAGCAACCTGTATAAGATATCGGTGGTTTACCGACACCACCGTGGTAGAGAGATCGTCGTGACGTCAATTCGGTAGAAGTGATACAGTAATCAAAACCGTACTCCATTGCTACATATTCGCGTTGGATTCCAACCATACACTCGAGGACGCCGGTGGTGGTAGCTGATAGACATGCTACGATGACAAAGTGAGT</canonical_amplicon>
		<polymorphic_amplicon>CTGTAATCCACACAGTAACAAAACAGAACCATCTTCAAAAACTCACATGCGAATAGCAACCTGTATRAGATATCGGTGGTTTACCGACACCACCGTGGTAGAGAGATCGTCGTGACGTCAATTCGGTAGAAGTGATACAGTAATCAAAACCGTACTCCATTGCTACATATTCGCGTTGGATTCCAACCATACACTCGAGGACGCCGGTGGTGGTAGCTGATAGACATGCTACGATGACAAAGTGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21677</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>922144</contig_pos>
        <strand>+</strand>
        <context>CGACACCACC[A/G]TGGTAGAGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATGCGAATAGCAACCTGTATAAGATATCGGTGGTTTACCGACACCACC</left_flank>
        <right_flank>TGGTAGAGAGATCGTCGTGACGTCAATTCGGTAGAAGTGATACAGTAATC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAACTTCTTGTCAATTTACGTTTTTTTCAAACAAAATATATTCAATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAAGAAAAAAAGAAAAAGAAAATCACAGTGCTCGAGGATTCACAAATTTTTTAGGATTCGAGTCGTAGTTGCAACCATTGGTATAGCATATACAGTGAATCGATGCGTCTTTCTTTGCCTGTAATCCACACAGTAACAAAACAGAACCATCTTCAAAAACTCACATGCGAATAGCAACCTGTATAAGATATCGGTGGTTTACCGACACCACCGTGGTAGAGAGATCGTCGTGACGTCAATTCGGTAGAAGTGATACAGTAATCAAAACCGTACTCCATTGCTACATATTCGCGTTGGATTCCAACCATACACTCGAGGACGCCGGTGGTGGTAGCTGATAGACATGCTACGATGACAAAGTGAGTAAAGAGGAGCATCGTTGGTTTGGATGCAGAGAGCCTGGAAGCAATCATTTTCCCGTTTTTCAACGGCTATTTCGAGCAGATGCAATATTTTCTAACTTTCGAAATGTGATAACGTTTATATGAAAAAAAAAGATCTAGAGAAATATGAAAACCTTTATGCAGTTTTGAATTTTCAAATATTGAATGATTTAGTCGGTGCTCAGAATGCAAATACGTCATTCGAAATCCGCGGCTAACAAAAAAAAAACCTATTCAAAAAAATACAAGTAACATCATTATGAACTTGAAACTTACAGAAAAAAAAATATTGCGAGATATTTTGTATCGGAAGACACATCTGCTACCAAC</canonical>
            <polymorphic>TTAACTTCTTGTCAATTTACGTTTTTTTCAAACAAAATATATTCAATTCCCTTATTATTCGTGTTTTCTTTTTCAGTTTTTCAAGGTTCTCCGTTTTCATCAATTCTGCCTACACACGGAAAAGAAAGAGTGCGCATAAACAAGAGGGAAAAGACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAAGAAAAAAAGAAAAAGAAAATCACAGTGCTCGAGGATTCACAAATTTTTTAGGATTCGAGTCGTAGTTGCAACCATTGGTATAGCATATACAGTGAATCGATGCGTCTTTCTTTGCCTGTAATCCACACAGTAACAAAACAGAACCATCTTCAAAAACTCACATGCGAATAGCAACCTGTATAAGATATCGGTGGTTTACCGACACCACCRTGGTAGAGAGATCGTCGTGACGTCAATTCGGTAGAAGTGATACAGTAATCAAAACCGTACTCCATTGCTACATATTCGCGTTGGATTCCAACCATACACTCGAGGACGCCGGTGGTGGTAGCTGATAGACATGCTACGATGACAAAGTGAGTAAAGAGGAGCATCGTTGGTTTGGATGCAGAGAGCCTGGAAGCAATCATTTTCCCGTTTTTCAACGGCTATTTCGAGCAGATGCAATATTTTCTAACTTTCGAAATGTGATAACGTTTATATGAAAAAAAAAGATCTAGAGAAATATGAAAACCTTTATGCAGTTTTGAATTTTCAAATATTGAATGATTTAGTCGGTGCTCAGAATGCAAATACGTCATTCGAAATCCGCGGCTAACAAAAAAAAAACCTATTCAAAAAAATACAAGTAACATCATTATGAACTTGAAACTTACAGAAAAAAAAATATTGCGAGATATTTTGTATCGGAAGACACATCTGCTACCAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACNNNNGTG</site>
                <isoschizomers>
                    <enzyme>AleI</enzyme>
                    <enzyme>OliI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>444 189 125 80 67 45 38 12</canonical_bands>
                <polymorphic_bands>444 189 125 125 67 38 12</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>498 381 121</canonical_bands>
                <polymorphic_bands>879 121</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>145 136 111 90 63 59 55 51 35 33 33 32 31 20 17 16 16 14 12 11 5 5 3 3 2 2</canonical_bands>
                <polymorphic_bands>145 136 111 90 63 59 55 51 35 33 33 32 31 22 20 16 16 14 12 11 5 3 3 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>497 430 73</canonical_bands>
                <polymorphic_bands>927 73</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTAATCCACACAGTAACAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACTCACTTTGTCATCGTAGCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTGTAATCCACACAGTAACAAAACAGAACCATCTTCAAAAACTCACATGCGAATAGCAACCTGTATAAGATATCGGTGGTTTACCGACACCACCGTGGTAGAGAGATCGTCGTGACGTCAATTCGGTAGAAGTGATACAGTAATCAAAACCGTACTCCATTGCTACATATTCGCGTTGGATTCCAACCATACACTCGAGGACGCCGGTGGTGGTAGCTGATAGACATGCTACGATGACAAAGTGAGT</canonical_amplicon>
		<polymorphic_amplicon>CTGTAATCCACACAGTAACAAAACAGAACCATCTTCAAAAACTCACATGCGAATAGCAACCTGTATAAGATATCGGTGGTTTACCGACACCACCRTGGTAGAGAGATCGTCGTGACGTCAATTCGGTAGAAGTGATACAGTAATCAAAACCGTACTCCATTGCTACATATTCGCGTTGGATTCCAACCATACACTCGAGGACGCCGGTGGTGGTAGCTGATAGACATGCTACGATGACAAAGTGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21678</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>924669</contig_pos>
        <strand>+</strand>
        <context>GGTACCGGCA[A/G]GCCCGCCTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTTCCTCCATCCGTTGTTGAATTTCGAGGAAAGGTGTTGGTACCGGCA</left_flank>
        <right_flank>GCCCGCCTGATTGAAGTCGCCCATTGCTCCAAGGTATTCACGTAAAGACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGCAGCTGGGTTGACGGCTGGAGAAGCTTGCGGAGTCGGTTGTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGAGGAGCGGAAGTTCCCGGGGTCGCTGCTGGAGCCGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTTCGTTGGGCACGCTCTGGGGTGGCACCGTTTCCTCTCCTCTCTAATTGAACACGTGCTTCTCTCATAAGACAGTCGTCTGAAAATACATGAATTGTCTGACAACAAAAGATATGAATATATGTGCAGTCCTTTCAGTTAGGAAGAATTTGAAATAGGCACTACAAAGAAGAATTCCTTCCAAAAATCAACACTACTCAATTTTGCTACATTCTCTCAAACTGACTGAGCATTTTTACCTTCTTCTTGTCTCCGTTCCTGCCGTGCCAATCGGTGGTGGACAGTTTCCTCCATCCGTTGTTGAATTTCGAGGAAAGGTGTTGGTACCGGCAGGCCCGCCTGATTGAAGTCGCCCATTGCTCCAAGGTATTCACGTAAAGACATATCCGGAAGTCCCGCTCGGAGTTGCTGCCATGAGACCCCATTTCGAACATATTGTCGTTGATGATTTTGTGGTTGTTGTTGTGGTCGAATGAGATTTCTTGGAGCAATCGGTTGGGGGTGCTGGTTTTGCACATTATACATGGGACGGTAGCGTTGCACGACTCGCGGGTGCTGTTGGACAACTCCTCCTCTTCGGTATACTTCAGGACGTGGTAATATTTGTCTTGGTGTTGGCGCGACTCTTGGTTGAATTGGGAAAACATTCGCTATTTGACGAACACCTCCTCGGCCAGCCACGTTGACATTACGGTTATTTTGAACTGCCGGTTGCTGTGGTTCATCGTCAAGAACAATAACTGGTGGTGGTGACAATGGTGGGGGTGCTGGACCAGGACTACCGGCAGGTGTGAGAATTGGTGGAGCGTCATCAAACTCGATTGGCGCTTGTT</canonical>
            <polymorphic>GAGCAGCTGGGTTGACGGCTGGAGAAGCTTGCGGAGTCGGTTGTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGAGGAGCGGAAGTTCCCGGGGTCGCTGCTGGAGCCGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTTCGTTGGGCACGCTCTGGGGTGGCACCGTTTCCTCTCCTCTCTAATTGAACACGTGCTTCTCTCATAAGACAGTCGTCTGAAAATACATGAATTGTCTGACAACAAAAGATATGAATATATGTGCAGTCCTTTCAGTTAGGAAGAATTTGAAATAGGCACTACAAAGAAGAATTCCTTCCAAAAATCAACACTACTCAATTTTGCTACATTCTCTCAAACTGACTGAGCATTTTTACCTTCTTCTTGTCTCCGTTCCTGCCGTGCCAATCGGTGGTGGACAGTTTCCTCCATCCGTTGTTGAATTTCGAGGAAAGGTGTTGGTACCGGCARGCCCGCCTGATTGAAGTCGCCCATTGCTCCAAGGTATTCACGTAAAGACATATCCGGAAGTCCCGCTCGGAGTTGCTGCCATGAGACCCCATTTCGAACATATTGTCGTTGATGATTTTGTGGTTGTTGTTGTGGTCGAATGAGATTTCTTGGAGCAATCGGTTGGGGGTGCTGGTTTTGCACATTATACATGGGACGGTAGCGTTGCACGACTCGCGGGTGCTGTTGGACAACTCCTCCTCTTCGGTATACTTCAGGACGTGGTAATATTTGTCTTGGTGTTGGCGCGACTCTTGGTTGAATTGGGAAAACATTCGCTATTTGACGAACACCTCCTCGGCCAGCCACGTTGACATTACGGTTATTTTGAACTGCCGGTTGCTGTGGTTCATCGTCAAGAACAATAACTGGTGGTGGTGACAATGGTGGGGGTGCTGGACCAGGACTACCGGCAGGTGTGAGAATTGGTGGAGCGTCATCAAACTCGATTGGCGCTTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 437 63</canonical_bands>
                <polymorphic_bands>937 63</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>429 339 160 72</canonical_bands>
                <polymorphic_bands>768 160 72</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>339 339 156 45 45 30 12 9 9 6 6 4</canonical_bands>
                <polymorphic_bands>678 156 45 45 30 12 9 9 6 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCTACATTCTCTCAAACTGACT</pcr_primer_p1>
		<pcr_primer_p2>CAAAATCATCAACGACAATATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGCTACATTCTCTCAAACTGACTGAGCATTTTTACCTTCTTCTTGTCTCCGTTCCTGCCGTGCCAATCGGTGGTGGACAGTTTCCTCCATCCGTTGTTGAATTTCGAGGAAAGGTGTTGGTACCGGCAGGCCCGCCTGATTGAAGTCGCCCATTGCTCCAAGGTATTCACGTAAAGACATATCCGGAAGTCCCGCTCGGAGTTGCTGCCATGAGACCCCATTTCGAACATATTGTCGTTGATGATTTTG</canonical_amplicon>
		<polymorphic_amplicon>TGCTACATTCTCTCAAACTGACTGAGCATTTTTACCTTCTTCTTGTCTCCGTTCCTGCCGTGCCAATCGGTGGTGGACAGTTTCCTCCATCCGTTGTTGAATTTCGAGGAAAGGTGTTGGTACCGGCARGCCCGCCTGATTGAAGTCGCCCATTGCTCCAAGGTATTCACGTAAAGACATATCCGGAAGTCCCGCTCGGAGTTGCTGCCATGAGACCCCATTTCGAACATATTGTCGTTGATGATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21679</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>924509</contig_pos>
        <strand>+</strand>
        <context>TACAAAGAAG[A/G]ATTCCTTCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTGCAGTCCTTTCAGTTAGGAAGAATTTGAAATAGGCACTACAAAGAAG</left_flank>
        <right_flank>ATTCCTTCCAAAAATCAACACTACTCAATTTTGCTACATTCTCTCAAACT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTTTTGTCTTACGTTTGGCCCTGTAGGGAACAAAATCAATTGTGGCATTTCTGGTCGGTTGGCTCGTCGGATAGCTCGAGCTCGGGCTCTGTCCACGAGTTGTGCTGGAGCAGGTACAGCTGGTACAACAGGCTGAGCTTCTTCGACTGGTTCGGGTTGAGCAGCTGGGTTGACGGCTGGAGAAGCTTGCGGAGTCGGTTGTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGAGGAGCGGAAGTTCCCGGGGTCGCTGCTGGAGCCGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTTCGTTGGGCACGCTCTGGGGTGGCACCGTTTCCTCTCCTCTCTAATTGAACACGTGCTTCTCTCATAAGACAGTCGTCTGAAAATACATGAATTGTCTGACAACAAAAGATATGAATATATGTGCAGTCCTTTCAGTTAGGAAGAATTTGAAATAGGCACTACAAAGAAGAATTCCTTCCAAAAATCAACACTACTCAATTTTGCTACATTCTCTCAAACTGACTGAGCATTTTTACCTTCTTCTTGTCTCCGTTCCTGCCGTGCCAATCGGTGGTGGACAGTTTCCTCCATCCGTTGTTGAATTTCGAGGAAAGGTGTTGGTACCGGCAGGCCCGCCTGATTGAAGTCGCCCATTGCTCCAAGGTATTCACGTAAAGACATATCCGGAAGTCCCGCTCGGAGTTGCTGCCATGAGACCCCATTTCGAACATATTGTCGTTGATGATTTTGTGGTTGTTGTTGTGGTCGAATGAGATTTCTTGGAGCAATCGGTTGGGGGTGCTGGTTTTGCACATTATACATGGGACGGTAGCGTTGCACGACTCGCGGGTGCTGTTGGACAACTCCTCCTCTTCGGTATACTTCAGGACGTGGTAATATTTGTCTTGGTGTTGGCGCGACTCTTGGTTGAATTGGGAAAACATTCGCTATTTGACGAACACCTCCTCGG</canonical>
            <polymorphic>ATCTTTTGTCTTACGTTTGGCCCTGTAGGGAACAAAATCAATTGTGGCATTTCTGGTCGGTTGGCTCGTCGGATAGCTCGAGCTCGGGCTCTGTCCACGAGTTGTGCTGGAGCAGGTACAGCTGGTACAACAGGCTGAGCTTCTTCGACTGGTTCGGGTTGAGCAGCTGGGTTGACGGCTGGAGAAGCTTGCGGAGTCGGTTGTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGAGGAGCGGAAGTTCCCGGGGTCGCTGCTGGAGCCGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTTCGTTGGGCACGCTCTGGGGTGGCACCGTTTCCTCTCCTCTCTAATTGAACACGTGCTTCTCTCATAAGACAGTCGTCTGAAAATACATGAATTGTCTGACAACAAAAGATATGAATATATGTGCAGTCCTTTCAGTTAGGAAGAATTTGAAATAGGCACTACAAAGAAGRATTCCTTCCAAAAATCAACACTACTCAATTTTGCTACATTCTCTCAAACTGACTGAGCATTTTTACCTTCTTCTTGTCTCCGTTCCTGCCGTGCCAATCGGTGGTGGACAGTTTCCTCCATCCGTTGTTGAATTTCGAGGAAAGGTGTTGGTACCGGCAGGCCCGCCTGATTGAAGTCGCCCATTGCTCCAAGGTATTCACGTAAAGACATATCCGGAAGTCCCGCTCGGAGTTGCTGCCATGAGACCCCATTTCGAACATATTGTCGTTGATGATTTTGTGGTTGTTGTTGTGGTCGAATGAGATTTCTTGGAGCAATCGGTTGGGGGTGCTGGTTTTGCACATTATACATGGGACGGTAGCGTTGCACGACTCGCGGGTGCTGTTGGACAACTCCTCCTCTTCGGTATACTTCAGGACGTGGTAATATTTGTCTTGGTGTTGGCGCGACTCTTGGTTGAATTGGGAAAACATTCGCTATTTGACGAACACCTCCTCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>473 370 131 26</canonical_bands>
                <polymorphic_bands>473 370 157</polymorphic_bands>
            </assay>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>503 468 29</canonical_bands>
                <polymorphic_bands>971 29</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>333 330 104 54 47 40 39 27 26</canonical_bands>
                <polymorphic_bands>333 330 104 54 53 47 40 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATGTGCAGTCCTTTCAGTTAG</pcr_primer_p1>
		<pcr_primer_p2>GTGAATACCTTGGAGCAATG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>ATATGTGCAGTCCTTTCAGTTAGGAAGAATTTGAAATAGGCACTACAAAGAAGAATTCCTTCCAAAAATCAACACTACTCAATTTTGCTACATTCTCTCAAACTGACTGAGCATTTTTACCTTCTTCTTGTCTCCGTTCCTGCCGTGCCAATCGGTGGTGGACAGTTTCCTCCATCCGTTGTTGAATTTCGAGGAAAGGTGTTGGTACCGGCAGGCCCGCCTGATTGAAGTCGCCCATTGCTCCAAGGTATTCAC</canonical_amplicon>
		<polymorphic_amplicon>ATATGTGCAGTCCTTTCAGTTAGGAAGAATTTGAAATAGGCACTACAAAGAAGRATTCCTTCCAAAAATCAACACTACTCAATTTTGCTACATTCTCTCAAACTGACTGAGCATTTTTACCTTCTTCTTGTCTCCGTTCCTGCCGTGCCAATCGGTGGTGGACAGTTTCCTCCATCCGTTGTTGAATTTCGAGGAAAGGTGTTGGTACCGGCAGGCCCGCCTGATTGAAGTCGCCCATTGCTCCAAGGTATTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21680</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>924488</contig_pos>
        <strand>+</strand>
        <context>GGAAGAATTT[A/G]AAATAGGCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAACAAAAGATATGAATATATGTGCAGTCCTTTCAGTTAGGAAGAATTT</left_flank>
        <right_flank>AAATAGGCACTACAAAGAAGAATTCCTTCCAAAAATCAACACTACTCAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGTTTTTTATAGCTGCATATCTTTTGTCTTACGTTTGGCCCTGTAGGGAACAAAATCAATTGTGGCATTTCTGGTCGGTTGGCTCGTCGGATAGCTCGAGCTCGGGCTCTGTCCACGAGTTGTGCTGGAGCAGGTACAGCTGGTACAACAGGCTGAGCTTCTTCGACTGGTTCGGGTTGAGCAGCTGGGTTGACGGCTGGAGAAGCTTGCGGAGTCGGTTGTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGAGGAGCGGAAGTTCCCGGGGTCGCTGCTGGAGCCGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTTCGTTGGGCACGCTCTGGGGTGGCACCGTTTCCTCTCCTCTCTAATTGAACACGTGCTTCTCTCATAAGACAGTCGTCTGAAAATACATGAATTGTCTGACAACAAAAGATATGAATATATGTGCAGTCCTTTCAGTTAGGAAGAATTTGAAATAGGCACTACAAAGAAGAATTCCTTCCAAAAATCAACACTACTCAATTTTGCTACATTCTCTCAAACTGACTGAGCATTTTTACCTTCTTCTTGTCTCCGTTCCTGCCGTGCCAATCGGTGGTGGACAGTTTCCTCCATCCGTTGTTGAATTTCGAGGAAAGGTGTTGGTACCGGCAGGCCCGCCTGATTGAAGTCGCCCATTGCTCCAAGGTATTCACGTAAAGACATATCCGGAAGTCCCGCTCGGAGTTGCTGCCATGAGACCCCATTTCGAACATATTGTCGTTGATGATTTTGTGGTTGTTGTTGTGGTCGAATGAGATTTCTTGGAGCAATCGGTTGGGGGTGCTGGTTTTGCACATTATACATGGGACGGTAGCGTTGCACGACTCGCGGGTGCTGTTGGACAACTCCTCCTCTTCGGTATACTTCAGGACGTGGTAATATTTGTCTTGGTGTTGGCGCGACTCTTGGTTGAATTGGGAAAACATTCGCT</canonical>
            <polymorphic>AATTGTTTTTTATAGCTGCATATCTTTTGTCTTACGTTTGGCCCTGTAGGGAACAAAATCAATTGTGGCATTTCTGGTCGGTTGGCTCGTCGGATAGCTCGAGCTCGGGCTCTGTCCACGAGTTGTGCTGGAGCAGGTACAGCTGGTACAACAGGCTGAGCTTCTTCGACTGGTTCGGGTTGAGCAGCTGGGTTGACGGCTGGAGAAGCTTGCGGAGTCGGTTGTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGAGGAGCGGAAGTTCCCGGGGTCGCTGCTGGAGCCGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTTCGTTGGGCACGCTCTGGGGTGGCACCGTTTCCTCTCCTCTCTAATTGAACACGTGCTTCTCTCATAAGACAGTCGTCTGAAAATACATGAATTGTCTGACAACAAAAGATATGAATATATGTGCAGTCCTTTCAGTTAGGAAGAATTTRAAATAGGCACTACAAAGAAGAATTCCTTCCAAAAATCAACACTACTCAATTTTGCTACATTCTCTCAAACTGACTGAGCATTTTTACCTTCTTCTTGTCTCCGTTCCTGCCGTGCCAATCGGTGGTGGACAGTTTCCTCCATCCGTTGTTGAATTTCGAGGAAAGGTGTTGGTACCGGCAGGCCCGCCTGATTGAAGTCGCCCATTGCTCCAAGGTATTCACGTAAAGACATATCCGGAAGTCCCGCTCGGAGTTGCTGCCATGAGACCCCATTTCGAACATATTGTCGTTGATGATTTTGTGGTTGTTGTTGTGGTCGAATGAGATTTCTTGGAGCAATCGGTTGGGGGTGCTGGTTTTGCACATTATACATGGGACGGTAGCGTTGCACGACTCGCGGGTGCTGTTGGACAACTCCTCCTCTTCGGTATACTTCAGGACGTGGTAATATTTGTCTTGGTGTTGGCGCGACTCTTGGTTGAATTGGGAAAACATTCGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACACGTGCTTCTCTCATAA</pcr_primer_p1>
		<pcr_primer_p2>GGAGACAAGAAGAAGGTAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>205</pcr_amplicon_size>
		<canonical_amplicon>GAACACGTGCTTCTCTCATAAGACAGTCGTCTGAAAATACATGAATTGTCTGACAACAAAAGATATGAATATATGTGCAGTCCTTTCAGTTAGGAAGAATTTGAAATAGGCACTACAAAGAAGAATTCCTTCCAAAAATCAACACTACTCAATTTTGCTACATTCTCTCAAACTGACTGAGCATTTTTACCTTCTTCTTGTCTCC</canonical_amplicon>
		<polymorphic_amplicon>GAACACGTGCTTCTCTCATAAGACAGTCGTCTGAAAATACATGAATTGTCTGACAACAAAAGATATGAATATATGTGCAGTCCTTTCAGTTAGGAAGAATTTRAAATAGGCACTACAAAGAAGAATTCCTTCCAAAAATCAACACTACTCAATTTTGCTACATTCTCTCAAACTGACTGAGCATTTTTACCTTCTTCTTGTCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21681</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>924443</contig_pos>
        <strand>+</strand>
        <context>GTCTGACAAC[A/G]AAAGATATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCTTCTCTCATAAGACAGTCGTCTGAAAATACATGAATTGTCTGACAAC</left_flank>
        <right_flank>AAAGATATGAATATATGTGCAGTCCTTTCAGTTAGGAAGAATTTGAAATA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGGGAGTGCATGTGCGCGATTTTGTTCGGTCTGGAAAATATAAAATTGTTTTTTATAGCTGCATATCTTTTGTCTTACGTTTGGCCCTGTAGGGAACAAAATCAATTGTGGCATTTCTGGTCGGTTGGCTCGTCGGATAGCTCGAGCTCGGGCTCTGTCCACGAGTTGTGCTGGAGCAGGTACAGCTGGTACAACAGGCTGAGCTTCTTCGACTGGTTCGGGTTGAGCAGCTGGGTTGACGGCTGGAGAAGCTTGCGGAGTCGGTTGTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGAGGAGCGGAAGTTCCCGGGGTCGCTGCTGGAGCCGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTTCGTTGGGCACGCTCTGGGGTGGCACCGTTTCCTCTCCTCTCTAATTGAACACGTGCTTCTCTCATAAGACAGTCGTCTGAAAATACATGAATTGTCTGACAACAAAAGATATGAATATATGTGCAGTCCTTTCAGTTAGGAAGAATTTGAAATAGGCACTACAAAGAAGAATTCCTTCCAAAAATCAACACTACTCAATTTTGCTACATTCTCTCAAACTGACTGAGCATTTTTACCTTCTTCTTGTCTCCGTTCCTGCCGTGCCAATCGGTGGTGGACAGTTTCCTCCATCCGTTGTTGAATTTCGAGGAAAGGTGTTGGTACCGGCAGGCCCGCCTGATTGAAGTCGCCCATTGCTCCAAGGTATTCACGTAAAGACATATCCGGAAGTCCCGCTCGGAGTTGCTGCCATGAGACCCCATTTCGAACATATTGTCGTTGATGATTTTGTGGTTGTTGTTGTGGTCGAATGAGATTTCTTGGAGCAATCGGTTGGGGGTGCTGGTTTTGCACATTATACATGGGACGGTAGCGTTGCACGACTCGCGGGTGCTGTTGGACAACTCCTCCTCTTCGGTATACTTCAGGACGTGGTAATATTTGT</canonical>
            <polymorphic>AAGGGGAGTGCATGTGCGCGATTTTGTTCGGTCTGGAAAATATAAAATTGTTTTTTATAGCTGCATATCTTTTGTCTTACGTTTGGCCCTGTAGGGAACAAAATCAATTGTGGCATTTCTGGTCGGTTGGCTCGTCGGATAGCTCGAGCTCGGGCTCTGTCCACGAGTTGTGCTGGAGCAGGTACAGCTGGTACAACAGGCTGAGCTTCTTCGACTGGTTCGGGTTGAGCAGCTGGGTTGACGGCTGGAGAAGCTTGCGGAGTCGGTTGTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGAGGAGCGGAAGTTCCCGGGGTCGCTGCTGGAGCCGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTTCGTTGGGCACGCTCTGGGGTGGCACCGTTTCCTCTCCTCTCTAATTGAACACGTGCTTCTCTCATAAGACAGTCGTCTGAAAATACATGAATTGTCTGACAACRAAAGATATGAATATATGTGCAGTCCTTTCAGTTAGGAAGAATTTGAAATAGGCACTACAAAGAAGAATTCCTTCCAAAAATCAACACTACTCAATTTTGCTACATTCTCTCAAACTGACTGAGCATTTTTACCTTCTTCTTGTCTCCGTTCCTGCCGTGCCAATCGGTGGTGGACAGTTTCCTCCATCCGTTGTTGAATTTCGAGGAAAGGTGTTGGTACCGGCAGGCCCGCCTGATTGAAGTCGCCCATTGCTCCAAGGTATTCACGTAAAGACATATCCGGAAGTCCCGCTCGGAGTTGCTGCCATGAGACCCCATTTCGAACATATTGTCGTTGATGATTTTGTGGTTGTTGTTGTGGTCGAATGAGATTTCTTGGAGCAATCGGTTGGGGGTGCTGGTTTTGCACATTATACATGGGACGGTAGCGTTGCACGACTCGCGGGTGCTGTTGGACAACTCCTCCTCTTCGGTATACTTCAGGACGTGGTAATATTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACACGTGCTTCTCTCATAA</pcr_primer_p1>
		<pcr_primer_p2>GGAGACAAGAAGAAGGTAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>205</pcr_amplicon_size>
		<canonical_amplicon>GAACACGTGCTTCTCTCATAAGACAGTCGTCTGAAAATACATGAATTGTCTGACAACAAAAGATATGAATATATGTGCAGTCCTTTCAGTTAGGAAGAATTTGAAATAGGCACTACAAAGAAGAATTCCTTCCAAAAATCAACACTACTCAATTTTGCTACATTCTCTCAAACTGACTGAGCATTTTTACCTTCTTCTTGTCTCC</canonical_amplicon>
		<polymorphic_amplicon>GAACACGTGCTTCTCTCATAAGACAGTCGTCTGAAAATACATGAATTGTCTGACAACRAAAGATATGAATATATGTGCAGTCCTTTCAGTTAGGAAGAATTTGAAATAGGCACTACAAAGAAGAATTCCTTCCAAAAATCAACACTACTCAATTTTGCTACATTCTCTCAAACTGACTGAGCATTTTTACCTTCTTCTTGTCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21682</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>924410</contig_pos>
        <strand>+</strand>
        <context>CTCATAAGAC[A/G]GTCGTCTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGCACCGTTTCCTCTCCTCTCTAATTGAACACGTGCTTCTCTCATAAGAC</left_flank>
        <right_flank>GTCGTCTGAAAATACATGAATTGTCTGACAACAAAAGATATGAATATATG</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTAAAAACTAACAGTCCATGTGGTGTAGTTCAAGGGGAGTGCATGTGCGCGATTTTGTTCGGTCTGGAAAATATAAAATTGTTTTTTATAGCTGCATATCTTTTGTCTTACGTTTGGCCCTGTAGGGAACAAAATCAATTGTGGCATTTCTGGTCGGTTGGCTCGTCGGATAGCTCGAGCTCGGGCTCTGTCCACGAGTTGTGCTGGAGCAGGTACAGCTGGTACAACAGGCTGAGCTTCTTCGACTGGTTCGGGTTGAGCAGCTGGGTTGACGGCTGGAGAAGCTTGCGGAGTCGGTTGTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGAGGAGCGGAAGTTCCCGGGGTCGCTGCTGGAGCCGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTTCGTTGGGCACGCTCTGGGGTGGCACCGTTTCCTCTCCTCTCTAATTGAACACGTGCTTCTCTCATAAGACAGTCGTCTGAAAATACATGAATTGTCTGACAACAAAAGATATGAATATATGTGCAGTCCTTTCAGTTAGGAAGAATTTGAAATAGGCACTACAAAGAAGAATTCCTTCCAAAAATCAACACTACTCAATTTTGCTACATTCTCTCAAACTGACTGAGCATTTTTACCTTCTTCTTGTCTCCGTTCCTGCCGTGCCAATCGGTGGTGGACAGTTTCCTCCATCCGTTGTTGAATTTCGAGGAAAGGTGTTGGTACCGGCAGGCCCGCCTGATTGAAGTCGCCCATTGCTCCAAGGTATTCACGTAAAGACATATCCGGAAGTCCCGCTCGGAGTTGCTGCCATGAGACCCCATTTCGAACATATTGTCGTTGATGATTTTGTGGTTGTTGTTGTGGTCGAATGAGATTTCTTGGAGCAATCGGTTGGGGGTGCTGGTTTTGCACATTATACATGGGACGGTAGCGTTGCACGACTCGCGGGTGCTGTTGGACAACTCCTCCT</canonical>
            <polymorphic>TCTTAAAAACTAACAGTCCATGTGGTGTAGTTCAAGGGGAGTGCATGTGCGCGATTTTGTTCGGTCTGGAAAATATAAAATTGTTTTTTATAGCTGCATATCTTTTGTCTTACGTTTGGCCCTGTAGGGAACAAAATCAATTGTGGCATTTCTGGTCGGTTGGCTCGTCGGATAGCTCGAGCTCGGGCTCTGTCCACGAGTTGTGCTGGAGCAGGTACAGCTGGTACAACAGGCTGAGCTTCTTCGACTGGTTCGGGTTGAGCAGCTGGGTTGACGGCTGGAGAAGCTTGCGGAGTCGGTTGTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGAGGAGCGGAAGTTCCCGGGGTCGCTGCTGGAGCCGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTTCGTTGGGCACGCTCTGGGGTGGCACCGTTTCCTCTCCTCTCTAATTGAACACGTGCTTCTCTCATAAGACRGTCGTCTGAAAATACATGAATTGTCTGACAACAAAAGATATGAATATATGTGCAGTCCTTTCAGTTAGGAAGAATTTGAAATAGGCACTACAAAGAAGAATTCCTTCCAAAAATCAACACTACTCAATTTTGCTACATTCTCTCAAACTGACTGAGCATTTTTACCTTCTTCTTGTCTCCGTTCCTGCCGTGCCAATCGGTGGTGGACAGTTTCCTCCATCCGTTGTTGAATTTCGAGGAAAGGTGTTGGTACCGGCAGGCCCGCCTGATTGAAGTCGCCCATTGCTCCAAGGTATTCACGTAAAGACATATCCGGAAGTCCCGCTCGGAGTTGCTGCCATGAGACCCCATTTCGAACATATTGTCGTTGATGATTTTGTGGTTGTTGTTGTGGTCGAATGAGATTTCTTGGAGCAATCGGTTGGGGGTGCTGGTTTTGCACATTATACATGGGACGGTAGCGTTGCACGACTCGCGGGTGCTGTTGGACAACTCCTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGTACAGCTGGTACAACA</pcr_primer_p1>
		<pcr_primer_p2>CTAACTGAAAGGACTGCACATA</pcr_primer_p2>
		<pcr_amplicon_size>357</pcr_amplicon_size>
		<canonical_amplicon>CAGGTACAGCTGGTACAACAGGCTGAGCTTCTTCGACTGGTTCGGGTTGAGCAGCTGGGTTGACGGCTGGAGAAGCTTGCGGAGTCGGTTGTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGAGGAGCGGAAGTTCCCGGGGTCGCTGCTGGAGCCGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTTCGTTGGGCACGCTCTGGGGTGGCACCGTTTCCTCTCCTCTCTAATTGAACACGTGCTTCTCTCATAAGACAGTCGTCTGAAAATACATGAATTGTCTGACAACAAAAGATATGAATATATGTGCAGTCCTTTCAGTTAG</canonical_amplicon>
		<polymorphic_amplicon>CAGGTACAGCTGGTACAACAGGCTGAGCTTCTTCGACTGGTTCGGGTTGAGCAGCTGGGTTGACGGCTGGAGAAGCTTGCGGAGTCGGTTGTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGAGGAGCGGAAGTTCCCGGGGTCGCTGCTGGAGCCGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTTCGTTGGGCACGCTCTGGGGTGGCACCGTTTCCTCTCCTCTCTAATTGAACACGTGCTTCTCTCATAAGACRGTCGTCTGAAAATACATGAATTGTCTGACAACAAAAGATATGAATATATGTGCAGTCCTTTCAGTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21683</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>924294</contig_pos>
        <strand>+</strand>
        <context>CTGCTGGAGC[C/T]GCAGAAGCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAGCTGACGCAGTCTGAGGAGCGGAAGTTCCCGGGGTCGCTGCTGGAGC</left_flank>
        <right_flank>GCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTTCGTTG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTTATATCGTATGTGTTCTAACATTAGCCTACTCAACCTATAAGTGCAATTTAAACCTAATTATCTAAGTTCCTTTGAGAGATATCAATGTTTGGTCAACCTAGTTAAAATACTTCTTAAAAACTAACAGTCCATGTGGTGTAGTTCAAGGGGAGTGCATGTGCGCGATTTTGTTCGGTCTGGAAAATATAAAATTGTTTTTTATAGCTGCATATCTTTTGTCTTACGTTTGGCCCTGTAGGGAACAAAATCAATTGTGGCATTTCTGGTCGGTTGGCTCGTCGGATAGCTCGAGCTCGGGCTCTGTCCACGAGTTGTGCTGGAGCAGGTACAGCTGGTACAACAGGCTGAGCTTCTTCGACTGGTTCGGGTTGAGCAGCTGGGTTGACGGCTGGAGAAGCTTGCGGAGTCGGTTGTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGAGGAGCGGAAGTTCCCGGGGTCGCTGCTGGAGCCGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTTCGTTGGGCACGCTCTGGGGTGGCACCGTTTCCTCTCCTCTCTAATTGAACACGTGCTTCTCTCATAAGACAGTCGTCTGAAAATACATGAATTGTCTGACAACAAAAGATATGAATATATGTGCAGTCCTTTCAGTTAGGAAGAATTTGAAATAGGCACTACAAAGAAGAATTCCTTCCAAAAATCAACACTACTCAATTTTGCTACATTCTCTCAAACTGACTGAGCATTTTTACCTTCTTCTTGTCTCCGTTCCTGCCGTGCCAATCGGTGGTGGACAGTTTCCTCCATCCGTTGTTGAATTTCGAGGAAAGGTGTTGGTACCGGCAGGCCCGCCTGATTGAAGTCGCCCATTGCTCCAAGGTATTCACGTAAAGACATATCCGGAAGTCCCGCTCGGAGTTGCTGCCATGAGACCCCATTTCGAACATATTGTCGTTGATGATTTTGTGGTT</canonical>
            <polymorphic>TTGTTATATCGTATGTGTTCTAACATTAGCCTACTCAACCTATAAGTGCAATTTAAACCTAATTATCTAAGTTCCTTTGAGAGATATCAATGTTTGGTCAACCTAGTTAAAATACTTCTTAAAAACTAACAGTCCATGTGGTGTAGTTCAAGGGGAGTGCATGTGCGCGATTTTGTTCGGTCTGGAAAATATAAAATTGTTTTTTATAGCTGCATATCTTTTGTCTTACGTTTGGCCCTGTAGGGAACAAAATCAATTGTGGCATTTCTGGTCGGTTGGCTCGTCGGATAGCTCGAGCTCGGGCTCTGTCCACGAGTTGTGCTGGAGCAGGTACAGCTGGTACAACAGGCTGAGCTTCTTCGACTGGTTCGGGTTGAGCAGCTGGGTTGACGGCTGGAGAAGCTTGCGGAGTCGGTTGTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGAGGAGCGGAAGTTCCCGGGGTCGCTGCTGGAGCYGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTTCGTTGGGCACGCTCTGGGGTGGCACCGTTTCCTCTCCTCTCTAATTGAACACGTGCTTCTCTCATAAGACAGTCGTCTGAAAATACATGAATTGTCTGACAACAAAAGATATGAATATATGTGCAGTCCTTTCAGTTAGGAAGAATTTGAAATAGGCACTACAAAGAAGAATTCCTTCCAAAAATCAACACTACTCAATTTTGCTACATTCTCTCAAACTGACTGAGCATTTTTACCTTCTTCTTGTCTCCGTTCCTGCCGTGCCAATCGGTGGTGGACAGTTTCCTCCATCCGTTGTTGAATTTCGAGGAAAGGTGTTGGTACCGGCAGGCCCGCCTGATTGAAGTCGCCCATTGCTCCAAGGTATTCACGTAAAGACATATCCGGAAGTCCCGCTCGGAGTTGCTGCCATGAGACCCCATTTCGAACATATTGTCGTTGATGATTTTGTGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>499 379 62 60</canonical_bands>
                <polymorphic_bands>878 62 60</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>497 299 133 71</canonical_bands>
                <polymorphic_bands>568 299 133</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>339 180 124 45 45 44 33 30 29 27 26 13 12 12 9 9 6 6 6 5</canonical_bands>
                <polymorphic_bands>339 180 124 54 45 44 33 30 29 27 26 13 12 12 9 6 6 6 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGGTACAGCTGGTACAACA</pcr_primer_p1>
		<pcr_primer_p2>CTAACTGAAAGGACTGCACATA</pcr_primer_p2>
		<pcr_amplicon_size>357</pcr_amplicon_size>
		<canonical_amplicon>CAGGTACAGCTGGTACAACAGGCTGAGCTTCTTCGACTGGTTCGGGTTGAGCAGCTGGGTTGACGGCTGGAGAAGCTTGCGGAGTCGGTTGTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGAGGAGCGGAAGTTCCCGGGGTCGCTGCTGGAGCCGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTTCGTTGGGCACGCTCTGGGGTGGCACCGTTTCCTCTCCTCTCTAATTGAACACGTGCTTCTCTCATAAGACAGTCGTCTGAAAATACATGAATTGTCTGACAACAAAAGATATGAATATATGTGCAGTCCTTTCAGTTAG</canonical_amplicon>
		<polymorphic_amplicon>CAGGTACAGCTGGTACAACAGGCTGAGCTTCTTCGACTGGTTCGGGTTGAGCAGCTGGGTTGACGGCTGGAGAAGCTTGCGGAGTCGGTTGTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGAGGAGCGGAAGTTCCCGGGGTCGCTGCTGGAGCYGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTTCGTTGGGCACGCTCTGGGGTGGCACCGTTTCCTCTCCTCTCTAATTGAACACGTGCTTCTCTCATAAGACAGTCGTCTGAAAATACATGAATTGTCTGACAACAAAAGATATGAATATATGTGCAGTCCTTTCAGTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21684</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>968033</contig_pos>
        <strand>+</strand>
        <context>ATTTCTGATA[C/T]ACCAATTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCACCCGATCGTGGGTATCAAAATCTCTGTTGTGAAATTATTTCTGATA</left_flank>
        <right_flank>ACCAATTTTGCCAACGACTTCTAGAAATCTGGTCCTGTTTTGAGTTCTGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAAAACAACAGAGCTCAAATCTTTTATAGCTGCAAGAAAAATATATCAAAGCTGAATATAGAGAAATTCAAAACTGACATAGAAGTTTTAATTTGGCTGATTTATAGCTAAAAAAAAGGTTCTGGTGGGAAAATGTCTAGGATTTAATAACGGTATGGTAGAGTAAATTGATATCGACACCAACCTAACCCTTCTTAGAACTGATTTTATACTATTAAATTAATAACTGGTCAGAATGTTTTGACAAAAAGTCTAAAATATTAGTCGGCCGGCTCAAAAAGAAATGTTAGCCGTGATCACCTGCAGAAAAGAGGAATTTGAGATAACCAGTATTGATAACAAGTAATGAGCTGTAATCATACAAAACTAGAACAGAACGATAAGTTGAGTTCTGTAAACAATAACTTTGAATCTGCCAGTTAATTTATTAATAGAATTAAAATAAGAACCACCCGATCGTGGGTATCAAAATCTCTGTTGTGAAATTATTTCTGATACACCAATTTTGCCAACGACTTCTAGAAATCTGGTCCTGTTTTGAGTTCTGGGTAGTTCAGTCTAGTTATTACGAACAGCATAGAGCCAAACAGACATATACATGTATTTTCTTATTTTTCGGCTTCTTATATCAAAAATCTACATTTCAAAGAAAAGATTTATCAGCGAATATTTTGAAGTTATCTGGACCTTCACGATTAACAGAATTTTGAGTAGAAACAAAAAACTAGACACGACTAGTCTCCAAACTCCGCCCCATTTTTATCTTGGAGAGTGGCTACAAATCCCTACAACTTCCGAAATTTGCCGGATTCACACTCTCCATGATTAAAATCCTCGGTGATCTTCAACAAAGTGCGAACTTTTAAAACTATCAAGTCAGGAACTATAACCTTTTCGAAGTCTGAACAGTTTTAAAGAATCCTAGGTGGCTATTTTTTCTGAATTCAAAAAACGAAAATTAGAGTAATTCGATTTTTCCATACGATTTTTTTCGATTT</canonical>
            <polymorphic>TTGAAAACAACAGAGCTCAAATCTTTTATAGCTGCAAGAAAAATATATCAAAGCTGAATATAGAGAAATTCAAAACTGACATAGAAGTTTTAATTTGGCTGATTTATAGCTAAAAAAAAGGTTCTGGTGGGAAAATGTCTAGGATTTAATAACGGTATGGTAGAGTAAATTGATATCGACACCAACCTAACCCTTCTTAGAACTGATTTTATACTATTAAATTAATAACTGGTCAGAATGTTTTGACAAAAAGTCTAAAATATTAGTCGGCCGGCTCAAAAAGAAATGTTAGCCGTGATCACCTGCAGAAAAGAGGAATTTGAGATAACCAGTATTGATAACAAGTAATGAGCTGTAATCATACAAAACTAGAACAGAACGATAAGTTGAGTTCTGTAAACAATAACTTTGAATCTGCCAGTTAATTTATTAATAGAATTAAAATAAGAACCACCCGATCGTGGGTATCAAAATCTCTGTTGTGAAATTATTTCTGATAYACCAATTTTGCCAACGACTTCTAGAAATCTGGTCCTGTTTTGAGTTCTGGGTAGTTCAGTCTAGTTATTACGAACAGCATAGAGCCAAACAGACATATACATGTATTTTCTTATTTTTCGGCTTCTTATATCAAAAATCTACATTTCAAAGAAAAGATTTATCAGCGAATATTTTGAAGTTATCTGGACCTTCACGATTAACAGAATTTTGAGTAGAAACAAAAAACTAGACACGACTAGTCTCCAAACTCCGCCCCATTTTTATCTTGGAGAGTGGCTACAAATCCCTACAACTTCCGAAATTTGCCGGATTCACACTCTCCATGATTAAAATCCTCGGTGATCTTCAACAAAGTGCGAACTTTTAAAACTATCAAGTCAGGAACTATAACCTTTTCGAAGTCTGAACAGTTTTAAAGAATCCTAGGTGGCTATTTTTTCTGAATTCAAAAAACGAAAATTAGAGTAATTCGATTTTTCCATACGATTTTTTTCGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>193 152 129 116 73 70 52 43 39 39 25 21 17 15 10 4 2</canonical_bands>
                <polymorphic_bands>210 152 129 116 73 70 52 43 39 39 25 21 15 10 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAACGATAAGTTGAGTTCTGT</pcr_primer_p1>
		<pcr_primer_p2>AGCCGAAAAATAAGAAAATACAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAGAACGATAAGTTGAGTTCTGTAAACAATAACTTTGAATCTGCCAGTTAATTTATTAATAGAATTAAAATAAGAACCACCCGATCGTGGGTATCAAAATCTCTGTTGTGAAATTATTTCTGATACACCAATTTTGCCAACGACTTCTAGAAATCTGGTCCTGTTTTGAGTTCTGGGTAGTTCAGTCTAGTTATTACGAACAGCATAGAGCCAAACAGACATATACATGTATTTTCTTATTTTTCGGCT</canonical_amplicon>
		<polymorphic_amplicon>CAGAACGATAAGTTGAGTTCTGTAAACAATAACTTTGAATCTGCCAGTTAATTTATTAATAGAATTAAAATAAGAACCACCCGATCGTGGGTATCAAAATCTCTGTTGTGAAATTATTTCTGATAYACCAATTTTGCCAACGACTTCTAGAAATCTGGTCCTGTTTTGAGTTCTGGGTAGTTCAGTCTAGTTATTACGAACAGCATAGAGCCAAACAGACATATACATGTATTTTCTTATTTTTCGGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21685</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>968180</contig_pos>
        <strand>+</strand>
        <context>ATCTACATTT[C/T]AAAGAAAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATACATGTATTTTCTTATTTTTCGGCTTCTTATATCAAAAATCTACATTT</left_flank>
        <right_flank>AAAGAAAAGATTTATCAGCGAATATTTTGAAGTTATCTGGACCTTCACGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAACGGTATGGTAGAGTAAATTGATATCGACACCAACCTAACCCTTCTTAGAACTGATTTTATACTATTAAATTAATAACTGGTCAGAATGTTTTGACAAAAAGTCTAAAATATTAGTCGGCCGGCTCAAAAAGAAATGTTAGCCGTGATCACCTGCAGAAAAGAGGAATTTGAGATAACCAGTATTGATAACAAGTAATGAGCTGTAATCATACAAAACTAGAACAGAACGATAAGTTGAGTTCTGTAAACAATAACTTTGAATCTGCCAGTTAATTTATTAATAGAATTAAAATAAGAACCACCCGATCGTGGGTATCAAAATCTCTGTTGTGAAATTATTTCTGATACACCAATTTTGCCAACGACTTCTAGAAATCTGGTCCTGTTTTGAGTTCTGGGTAGTTCAGTCTAGTTATTACGAACAGCATAGAGCCAAACAGACATATACATGTATTTTCTTATTTTTCGGCTTCTTATATCAAAAATCTACATTTCAAAGAAAAGATTTATCAGCGAATATTTTGAAGTTATCTGGACCTTCACGATTAACAGAATTTTGAGTAGAAACAAAAAACTAGACACGACTAGTCTCCAAACTCCGCCCCATTTTTATCTTGGAGAGTGGCTACAAATCCCTACAACTTCCGAAATTTGCCGGATTCACACTCTCCATGATTAAAATCCTCGGTGATCTTCAACAAAGTGCGAACTTTTAAAACTATCAAGTCAGGAACTATAACCTTTTCGAAGTCTGAACAGTTTTAAAGAATCCTAGGTGGCTATTTTTTCTGAATTCAAAAAACGAAAATTAGAGTAATTCGATTTTTCCATACGATTTTTTTCGATTTTTCCATAATTCTATTTTTCGAGAAAAACATGGCTAATCTGTGTGAAAATCTCCGATTTCTCCAATCTTGTTTTTGAGATTTGCACTTTTTGAGTACAACTTTGGAATTAGCTGATTCATTGTTTTGGTGAAATAAATTTATGAATTT</canonical>
            <polymorphic>AATAACGGTATGGTAGAGTAAATTGATATCGACACCAACCTAACCCTTCTTAGAACTGATTTTATACTATTAAATTAATAACTGGTCAGAATGTTTTGACAAAAAGTCTAAAATATTAGTCGGCCGGCTCAAAAAGAAATGTTAGCCGTGATCACCTGCAGAAAAGAGGAATTTGAGATAACCAGTATTGATAACAAGTAATGAGCTGTAATCATACAAAACTAGAACAGAACGATAAGTTGAGTTCTGTAAACAATAACTTTGAATCTGCCAGTTAATTTATTAATAGAATTAAAATAAGAACCACCCGATCGTGGGTATCAAAATCTCTGTTGTGAAATTATTTCTGATACACCAATTTTGCCAACGACTTCTAGAAATCTGGTCCTGTTTTGAGTTCTGGGTAGTTCAGTCTAGTTATTACGAACAGCATAGAGCCAAACAGACATATACATGTATTTTCTTATTTTTCGGCTTCTTATATCAAAAATCTACATTTYAAAGAAAAGATTTATCAGCGAATATTTTGAAGTTATCTGGACCTTCACGATTAACAGAATTTTGAGTAGAAACAAAAAACTAGACACGACTAGTCTCCAAACTCCGCCCCATTTTTATCTTGGAGAGTGGCTACAAATCCCTACAACTTCCGAAATTTGCCGGATTCACACTCTCCATGATTAAAATCCTCGGTGATCTTCAACAAAGTGCGAACTTTTAAAACTATCAAGTCAGGAACTATAACCTTTTCGAAGTCTGAACAGTTTTAAAGAATCCTAGGTGGCTATTTTTTCTGAATTCAAAAAACGAAAATTAGAGTAATTCGATTTTTCCATACGATTTTTTTCGATTTTTCCATAATTCTATTTTTCGAGAAAAACATGGCTAATCTGTGTGAAAATCTCCGATTTCTCCAATCTTGTTTTTGAGATTTGCACTTTTTGAGTACAACTTTGGAATTAGCTGATTCATTGTTTTGGTGAAATAAATTTATGAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTATCAAAATCTCTGTTGTGAA</pcr_primer_p1>
		<pcr_primer_p2>CTCAAAATTCTGTTAATCGTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTATCAAAATCTCTGTTGTGAAATTATTTCTGATACACCAATTTTGCCAACGACTTCTAGAAATCTGGTCCTGTTTTGAGTTCTGGGTAGTTCAGTCTAGTTATTACGAACAGCATAGAGCCAAACAGACATATACATGTATTTTCTTATTTTTCGGCTTCTTATATCAAAAATCTACATTTCAAAGAAAAGATTTATCAGCGAATATTTTGAAGTTATCTGGACCTTCACGATTAACAGAATTTTGAG</canonical_amplicon>
		<polymorphic_amplicon>GGTATCAAAATCTCTGTTGTGAAATTATTTCTGATACACCAATTTTGCCAACGACTTCTAGAAATCTGGTCCTGTTTTGAGTTCTGGGTAGTTCAGTCTAGTTATTACGAACAGCATAGAGCCAAACAGACATATACATGTATTTTCTTATTTTTCGGCTTCTTATATCAAAAATCTACATTTYAAAGAAAAGATTTATCAGCGAATATTTTGAAGTTATCTGGACCTTCACGATTAACAGAATTTTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21686</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>968305</contig_pos>
        <strand>+</strand>
        <context>TTATCTTGGA[A/G]AGTGGCTACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAACTAGACACGACTAGTCTCCAAACTCCGCCCCATTTTTATCTTGGA</left_flank>
        <right_flank>AGTGGCTACAAATCCCTACAACTTCCGAAATTTGCCGGATTCACACTCTC</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTCAAAAAGAAATGTTAGCCGTGATCACCTGCAGAAAAGAGGAATTTGAGATAACCAGTATTGATAACAAGTAATGAGCTGTAATCATACAAAACTAGAACAGAACGATAAGTTGAGTTCTGTAAACAATAACTTTGAATCTGCCAGTTAATTTATTAATAGAATTAAAATAAGAACCACCCGATCGTGGGTATCAAAATCTCTGTTGTGAAATTATTTCTGATACACCAATTTTGCCAACGACTTCTAGAAATCTGGTCCTGTTTTGAGTTCTGGGTAGTTCAGTCTAGTTATTACGAACAGCATAGAGCCAAACAGACATATACATGTATTTTCTTATTTTTCGGCTTCTTATATCAAAAATCTACATTTCAAAGAAAAGATTTATCAGCGAATATTTTGAAGTTATCTGGACCTTCACGATTAACAGAATTTTGAGTAGAAACAAAAAACTAGACACGACTAGTCTCCAAACTCCGCCCCATTTTTATCTTGGAGAGTGGCTACAAATCCCTACAACTTCCGAAATTTGCCGGATTCACACTCTCCATGATTAAAATCCTCGGTGATCTTCAACAAAGTGCGAACTTTTAAAACTATCAAGTCAGGAACTATAACCTTTTCGAAGTCTGAACAGTTTTAAAGAATCCTAGGTGGCTATTTTTTCTGAATTCAAAAAACGAAAATTAGAGTAATTCGATTTTTCCATACGATTTTTTTCGATTTTTCCATAATTCTATTTTTCGAGAAAAACATGGCTAATCTGTGTGAAAATCTCCGATTTCTCCAATCTTGTTTTTGAGATTTGCACTTTTTGAGTACAACTTTGGAATTAGCTGATTCATTGTTTTGGTGAAATAAATTTATGAATTTTCGAACGAAAATAGATTTTCTAGTTTACTTTTTGAAACAAAAAACAATGCCAGAATAGAAAGCACAAATCACAAAATTGCTGAGTCAGTGAATAAAAACAAACGGCGGTGTGTATCTTCTAGATG</canonical>
            <polymorphic>GGCTCAAAAAGAAATGTTAGCCGTGATCACCTGCAGAAAAGAGGAATTTGAGATAACCAGTATTGATAACAAGTAATGAGCTGTAATCATACAAAACTAGAACAGAACGATAAGTTGAGTTCTGTAAACAATAACTTTGAATCTGCCAGTTAATTTATTAATAGAATTAAAATAAGAACCACCCGATCGTGGGTATCAAAATCTCTGTTGTGAAATTATTTCTGATACACCAATTTTGCCAACGACTTCTAGAAATCTGGTCCTGTTTTGAGTTCTGGGTAGTTCAGTCTAGTTATTACGAACAGCATAGAGCCAAACAGACATATACATGTATTTTCTTATTTTTCGGCTTCTTATATCAAAAATCTACATTTCAAAGAAAAGATTTATCAGCGAATATTTTGAAGTTATCTGGACCTTCACGATTAACAGAATTTTGAGTAGAAACAAAAAACTAGACACGACTAGTCTCCAAACTCCGCCCCATTTTTATCTTGGARAGTGGCTACAAATCCCTACAACTTCCGAAATTTGCCGGATTCACACTCTCCATGATTAAAATCCTCGGTGATCTTCAACAAAGTGCGAACTTTTAAAACTATCAAGTCAGGAACTATAACCTTTTCGAAGTCTGAACAGTTTTAAAGAATCCTAGGTGGCTATTTTTTCTGAATTCAAAAAACGAAAATTAGAGTAATTCGATTTTTCCATACGATTTTTTTCGATTTTTCCATAATTCTATTTTTCGAGAAAAACATGGCTAATCTGTGTGAAAATCTCCGATTTCTCCAATCTTGTTTTTGAGATTTGCACTTTTTGAGTACAACTTTGGAATTAGCTGATTCATTGTTTTGGTGAAATAAATTTATGAATTTTCGAACGAAAATAGATTTTCTAGTTTACTTTTTGAAACAAAAAACAATGCCAGAATAGAAAGCACAAATCACAAAATTGCTGAGTCAGTGAATAAAAACAAACGGCGGTGTGTATCTTCTAGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATTTATCAGCGAATATTTTGA</pcr_primer_p1>
		<pcr_primer_p2>GACTTCGAAAAGGTTATAGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGATTTATCAGCGAATATTTTGAAGTTATCTGGACCTTCACGATTAACAGAATTTTGAGTAGAAACAAAAAACTAGACACGACTAGTCTCCAAACTCCGCCCCATTTTTATCTTGGAGAGTGGCTACAAATCCCTACAACTTCCGAAATTTGCCGGATTCACACTCTCCATGATTAAAATCCTCGGTGATCTTCAACAAAGTGCGAACTTTTAAAACTATCAAGTCAGGAACTATAACCTTTTCGAAGTC</canonical_amplicon>
		<polymorphic_amplicon>AGATTTATCAGCGAATATTTTGAAGTTATCTGGACCTTCACGATTAACAGAATTTTGAGTAGAAACAAAAAACTAGACACGACTAGTCTCCAAACTCCGCCCCATTTTTATCTTGGARAGTGGCTACAAATCCCTACAACTTCCGAAATTTGCCGGATTCACACTCTCCATGATTAAAATCCTCGGTGATCTTCAACAAAGTGCGAACTTTTAAAACTATCAAGTCAGGAACTATAACCTTTTCGAAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21687</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>970526</contig_pos>
        <strand>+</strand>
        <context>AGTCGTGATG[A/G]AAAAATGTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATCAGTTGTTATGTTCAATCAAGAAACAAATTTTAGTTGAGTCGTGATG</left_flank>
        <right_flank>AAAAATGTGTTTCAGATATGACTTTTCAAAACTTCAAAATCTCCAGTGAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGTGAATTCAGAACAGGGCGAATTTCCGACTTGAAAACAAAGTTCAGATCATTGACGACAAACTTTCAGTCTTCAAAATCAAGCTTTTCAAAAATGATGAGTTATTTGAACGCCAAACTTCAACCAAATAAATGCGGATTTTACGAAAATCACTATTCGCATAATTAGGTGTTACCAAAAACTGATATTATGAAATGAGAAAACTTTCTGTTTTGCAGAAATATCGAAGGAAAATAACTTTGAATTGAAGAGCTCAGATTTGTAAAATGCTCCTAGTCAAATAAAATTCAAGGAGAAACGTGTGAACTTCTCAAGAATATTCAGATACAAATTTTTTTGAAATTCAGGTCTGAGGATATCTAAGGCATTTTTTGAGGTTGGTTTGGGAGTTATAGTTAGTTTTTGTAAAATCGAAAATTCGAAGAATCACAAACTAACATATTCTAACATCAGTTGTTATGTTCAATCAAGAAACAAATTTTAGTTGAGTCGTGATGAAAAAATGTGTTTCAGATATGACTTTTCAAAACTTCAAAATCTCCAGTGATGCAATATGGGTTACAAATACTTTTAAAAGTTTGGAAACCAAATAGAAAGAACCAAGAAAAGTGTGATTACAGTTTTAGACTAATTTTAAAGGATTTCGAATAGGAATTTTAGAAATGGAATGAAAATGGTGTAGGATCGGTATAAACAATCGAATGCTCGCAAAATCAAAAGTAAGATAGGCTCTAGACGTTAGTATTAAGCAAACCAATTTACAAGTAGTTCGAAACTGAAAACCTAGAAGCTCCTGAAATCACAACTTTGATTATGCCAAAAGTTTTTCTGCGCAGGTGTGACCAACTGTTTGATGCTTTTTGCATGAATCTGCTCTCCCTCCGATCATTTCCTGTTATTTTTGCACTGTATGTACAAACACCAGGCTCTCGCTCCATCTCTCCACATCATTTATACACACAGGCAGACATACAAACAAAATCGACCAAAACAGTGTG</canonical>
            <polymorphic>CGAGTGAATTCAGAACAGGGCGAATTTCCGACTTGAAAACAAAGTTCAGATCATTGACGACAAACTTTCAGTCTTCAAAATCAAGCTTTTCAAAAATGATGAGTTATTTGAACGCCAAACTTCAACCAAATAAATGCGGATTTTACGAAAATCACTATTCGCATAATTAGGTGTTACCAAAAACTGATATTATGAAATGAGAAAACTTTCTGTTTTGCAGAAATATCGAAGGAAAATAACTTTGAATTGAAGAGCTCAGATTTGTAAAATGCTCCTAGTCAAATAAAATTCAAGGAGAAACGTGTGAACTTCTCAAGAATATTCAGATACAAATTTTTTTGAAATTCAGGTCTGAGGATATCTAAGGCATTTTTTGAGGTTGGTTTGGGAGTTATAGTTAGTTTTTGTAAAATCGAAAATTCGAAGAATCACAAACTAACATATTCTAACATCAGTTGTTATGTTCAATCAAGAAACAAATTTTAGTTGAGTCGTGATGRAAAAATGTGTTTCAGATATGACTTTTCAAAACTTCAAAATCTCCAGTGATGCAATATGGGTTACAAATACTTTTAAAAGTTTGGAAACCAAATAGAAAGAACCAAGAAAAGTGTGATTACAGTTTTAGACTAATTTTAAAGGATTTCGAATAGGAATTTTAGAAATGGAATGAAAATGGTGTAGGATCGGTATAAACAATCGAATGCTCGCAAAATCAAAAGTAAGATAGGCTCTAGACGTTAGTATTAAGCAAACCAATTTACAAGTAGTTCGAAACTGAAAACCTAGAAGCTCCTGAAATCACAACTTTGATTATGCCAAAAGTTTTTCTGCGCAGGTGTGACCAACTGTTTGATGCTTTTTGCATGAATCTGCTCTCCCTCCGATCATTTCCTGTTATTTTTGCACTGTATGTACAAACACCAGGCTCTCGCTCCATCTCTCCACATCATTTATACACACAGGCAGACATACAAACAAAATCGACCAAAACAGTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTCGAAGAATCACAAACTA</pcr_primer_p1>
		<pcr_primer_p2>CTAAAATTCCTATTCGAAATCCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAATTCGAAGAATCACAAACTAACATATTCTAACATCAGTTGTTATGTTCAATCAAGAAACAAATTTTAGTTGAGTCGTGATGAAAAAATGTGTTTCAGATATGACTTTTCAAAACTTCAAAATCTCCAGTGATGCAATATGGGTTACAAATACTTTTAAAAGTTTGGAAACCAAATAGAAAGAACCAAGAAAAGTGTGATTACAGTTTTAGACTAATTTTAAAGGATTTCGAATAGGAATTTTAG</canonical_amplicon>
		<polymorphic_amplicon>AAAATTCGAAGAATCACAAACTAACATATTCTAACATCAGTTGTTATGTTCAATCAAGAAACAAATTTTAGTTGAGTCGTGATGRAAAAATGTGTTTCAGATATGACTTTTCAAAACTTCAAAATCTCCAGTGATGCAATATGGGTTACAAATACTTTTAAAAGTTTGGAAACCAAATAGAAAGAACCAAGAAAAGTGTGATTACAGTTTTAGACTAATTTTAAAGGATTTCGAATAGGAATTTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21688</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>972736</contig_pos>
        <strand></strand>
        <context>GTACACGTGA[T/G]GAATGGCTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GGGAGGGCGGAGATGATCGAGGCTCTTTTCAAGTTATTTTGTACACGTGA</left_flank>
        <right_flank>GAATGGCTGAGGGTCTAGAAACAGAAAGCAGAAACAAGAAAAATGAAGGG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTACCTCAACTCCAAAGTTTTCAATTCAGCTTCAAACTGAAATAGCCGTATATCAAAATGGAGGGAACTACTGTAACAATTAGAATGTATCCGAGACTATACAACAGCTTAAAAATACAATATAATAATTCGAGGAAAATGGGAAAAAGTATTACTCATCCTATACTTTAGTATTTTTGACATGGGATTAGAGAAGAAAAATATTTGAGATGAGATAGATCAGGAGGTATTGAGATAGTGATAAATGTCTAGGCTAAAGACGGAACTTCTATGCATTCATTTAGGCCCGCCCCTTGCCCGTCAACTCCTCTTCTCTTCTTGGTCCTCAACTTTTTTCTATTTTCAGCTTTCCGAATGACAACAAAAATAGCTTCTGAGAAGAAGAGACACGAGTGTAGACAACCGGGGGAGCCAAAAATGGAAAAACGGAGCGGATTGACAAGAAGGGAGGGCGGAGATGATCGAGGCTCTTTTCAAGTTATTTTGTACACGTGATGAATGGCTGAGGGTCTAGAAACAGAAAGCAGAAACAAGAAAAATGAAGGGGTTCTCCTTGTTATTGTTGTGTCTAGCGAAATTCTGTGAAATTCATTTTCTCGGAGGAGTTCCTCTCTTCCTTCGAGTTCTAGGGGGCACCGCTCAACAAGAAAGCAGACTTAAAACGGAAATGGGTTTAGAGATGACGATCTTTGGATTTGGAACCTAGATGAAAGGCCAAGAAAATGATGATGATACCTACTTTTGAAATCTGAAATTTCAAAAACCAAGAAAACGTCAACCAGGTGAGATGGGAATGAAACGAGAAAGGAAACTGACGTTCGCTAATGGTTCAGTAAAAGGTTTTGTTGTTCTAAACGCTAATGAAAGCAAAAGTAGAAAATGACAAAAGACCAGAAGGAAAACAGAGAAAGAAGAAGAAATGTAACTATTTTCAAGCTTTTGCTTCTTTTTCTTCTTTTCTCATTTTTTCTTCCTCTCTCCTCTCCCCTCATTTTT</canonical>
            <polymorphic>TTTTTTACCTCAACTCCAAAGTTTTCAATTCAGCTTCAAACTGAAATAGCCGTATATCAAAATGGAGGGAACTACTGTAACAATTAGAATGTATCCGAGACTATACAACAGCTTAAAAATACAATATAATAATTCGAGGAAAATGGGAAAAAGTATTACTCATCCTATACTTTAGTATTTTTGACATGGGATTAGAGAAGAAAAATATTTGAGATGAGATAGATCAGGAGGTATTGAGATAGTGATAAATGTCTAGGCTAAAGACGGAACTTCTATGCATTCATTTAGGCCCGCCCCTTGCCCGTCAACTCCTCTTCTCTTCTTGGTCCTCAACTTTTTTCTATTTTCAGCTTTCCGAATGACAACAAAAATAGCTTCTGAGAAGAAGAGACACGAGTGTAGACAACCGGGGGAGCCAAAAATGGAAAAACGGAGCGGATTGACAAGAAGGGAGGGCGGAGATGATCGAGGCTCTTTTCAAGTTATTTTGTACACGTGAKGAATGGCTGAGGGTCTAGAAACAGAAAGCAGAAACAAGAAAAATGAAGGGGTTCTCCTTGTTATTGTTGTGTCTAGCGAAATTCTGTGAAATTCATTTTCTCGGAGGAGTTCCTCTCTTCCTTCGAGTTCTAGGGGGCACCGCTCAACAAGAAAGCAGACTTAAAACGGAAATGGGTTTAGAGATGACGATCTTTGGATTTGGAACCTAGATGAAAGGCCAAGAAAATGATGATGATACCTACTTTTGAAATCTGAAATTTCAAAAACCAAGAAAACGTCAACCAGGTGAGATGGGAATGAAACGAGAAAGGAAACTGACGTTCGCTAATGGTTCAGTAAAAGGTTTTGTTGTTCTAAACGCTAATGAAAGCAAAAGTAGAAAATGACAAAAGACCAGAAGGAAAACAGAGAAAGAAGAAGAAATGTAACTATTTTCAAGCTTTTGCTTCTTTTTCTTCTTTTCTCATTTTTTCTTCCTCTCTCCTCTCCCCTCATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGAGACACGAGTGTAGACAAC</pcr_primer_p1>
		<pcr_primer_p2>CCTAGAACTCGAAGGAAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGAGACACGAGTGTAGACAACCGGGGGAGCCAAAAATGGAAAAACGGAGCGGATTGACAAGAAGGGAGGGCGGAGATGATCGAGGCTCTTTTCAAGTTATTTTGTACACGTGATGAATGGCTGAGGGTCTAGAAACAGAAAGCAGAAACAAGAAAAATGAAGGGGTTCTCCTTGTTATTGTTGTGTCTAGCGAAATTCTGTGAAATTCATTTTCTCGGAGGAGTTCCTCTCTTCCTTCGAGTTCTAGG</canonical_amplicon>
		<polymorphic_amplicon>GAAGAGACACGAGTGTAGACAACCGGGGGAGCCAAAAATGGAAAAACGGAGCGGATTGACAAGAAGGGAGGGCGGAGATGATCGAGGCTCTTTTCAAGTTATTTTGTACACGTGAKGAATGGCTGAGGGTCTAGAAACAGAAAGCAGAAACAAGAAAAATGAAGGGGTTCTCCTTGTTATTGTTGTGTCTAGCGAAATTCTGTGAAATTCATTTTCTCGGAGGAGTTCCTCTCTTCCTTCGAGTTCTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21689</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>973064</contig_pos>
        <strand></strand>
        <context>GACGTTCGCT[A/G]ATGGTTCAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCAACCAGGTGAGATGGGAATGAAACGAGAAAGGAAACTGACGTTCGCT</left_flank>
        <right_flank>ATGGTTCAGTAAAAGGTTTTGTTGTTCTAAACGCTAATGAAAGCAAAAGT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAACTTTTTTCTATTTTCAGCTTTCCGAATGACAACAAAAATAGCTTCTGAGAAGAAGAGACACGAGTGTAGACAACCGGGGGAGCCAAAAATGGAAAAACGGAGCGGATTGACAAGAAGGGAGGGCGGAGATGATCGAGGCTCTTTTCAAGTTATTTTGTACACGTGATGAATGGCTGAGGGTCTAGAAACAGAAAGCAGAAACAAGAAAAATGAAGGGGTTCTCCTTGTTATTGTTGTGTCTAGCGAAATTCTGTGAAATTCATTTTCTCGGAGGAGTTCCTCTCTTCCTTCGAGTTCTAGGGGGCACCGCTCAACAAGAAAGCAGACTTAAAACGGAAATGGGTTTAGAGATGACGATCTTTGGATTTGGAACCTAGATGAAAGGCCAAGAAAATGATGATGATACCTACTTTTGAAATCTGAAATTTCAAAAACCAAGAAAACGTCAACCAGGTGAGATGGGAATGAAACGAGAAAGGAAACTGACGTTCGCTAATGGTTCAGTAAAAGGTTTTGTTGTTCTAAACGCTAATGAAAGCAAAAGTAGAAAATGACAAAAGACCAGAAGGAAAACAGAGAAAGAAGAAGAAATGTAACTATTTTCAAGCTTTTGCTTCTTTTTCTTCTTTTCTCATTTTTTCTTCCTCTCTCCTCTCCCCTCATTTTTTTTTCTATTCTCATGATGTACCCTCTCGTCGATAGACACCGACAAACAGCATCGTCAGGTTTTCCAGGCTTCTATTTTCGACACATCCGGAAATAACCTCTTCTATCTATCTTTCTCTATTGCTTTCTCTTTCCTCGAAAAGTGTGTGTGGGGGGTTGTCGTCAGAAGGGCTTTAATAGCTAAAATTCCTCTATGTTCTCAATTTAGATTTCTCAGTTTTGAGATCTCAAAGCTAAGAAAATAATACATGGGTTGGGTTCAGAAATGAAAGATAGAAAAATCTAAAGCAGAATTTTCAAAAAGAAGGGAACTGAATTCGAAACCATAA</canonical>
            <polymorphic>CTCAACTTTTTTCTATTTTCAGCTTTCCGAATGACAACAAAAATAGCTTCTGAGAAGAAGAGACACGAGTGTAGACAACCGGGGGAGCCAAAAATGGAAAAACGGAGCGGATTGACAAGAAGGGAGGGCGGAGATGATCGAGGCTCTTTTCAAGTTATTTTGTACACGTGATGAATGGCTGAGGGTCTAGAAACAGAAAGCAGAAACAAGAAAAATGAAGGGGTTCTCCTTGTTATTGTTGTGTCTAGCGAAATTCTGTGAAATTCATTTTCTCGGAGGAGTTCCTCTCTTCCTTCGAGTTCTAGGGGGCACCGCTCAACAAGAAAGCAGACTTAAAACGGAAATGGGTTTAGAGATGACGATCTTTGGATTTGGAACCTAGATGAAAGGCCAAGAAAATGATGATGATACCTACTTTTGAAATCTGAAATTTCAAAAACCAAGAAAACGTCAACCAGGTGAGATGGGAATGAAACGAGAAAGGAAACTGACGTTCGCTRATGGTTCAGTAAAAGGTTTTGTTGTTCTAAACGCTAATGAAAGCAAAAGTAGAAAATGACAAAAGACCAGAAGGAAAACAGAGAAAGAAGAAGAAATGTAACTATTTTCAAGCTTTTGCTTCTTTTTCTTCTTTTCTCATTTTTTCTTCCTCTCTCCTCTCCCCTCATTTTTTTTTCTATTCTCATGATGTACCCTCTCGTCGATAGACACCGACAAACAGCATCGTCAGGTTTTCCAGGCTTCTATTTTCGACACATCCGGAAATAACCTCTTCTATCTATCTTTCTCTATTGCTTTCTCTTTCCTCGAAAAGTGTGTGTGGGGGGTTGTCGTCAGAAGGGCTTTAATAGCTAAAATTCCTCTATGTTCTCAATTTAGATTTCTCAGTTTTGAGATCTCAAAGCTAAGAAAATAATACATGGGTTGGGTTCAGAAATGAAAGATAGAAAAATCTAAAGCAGAATTTTCAAAAAGAAGGGAACTGAATTCGAAACCATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACAAGAAAGCAGACTTAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TCTGGTCTTTTGTCATTTTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CAACAAGAAAGCAGACTTAAAACGGAAATGGGTTTAGAGATGACGATCTTTGGATTTGGAACCTAGATGAAAGGCCAAGAAAATGATGATGATACCTACTTTTGAAATCTGAAATTTCAAAAACCAAGAAAACGTCAACCAGGTGAGATGGGAATGAAACGAGAAAGGAAACTGACGTTCGCTAATGGTTCAGTAAAAGGTTTTGTTGTTCTAAACGCTAATGAAAGCAAAAGTAGAAAATGACAAAAGACCAGA</canonical_amplicon>
		<polymorphic_amplicon>CAACAAGAAAGCAGACTTAAAACGGAAATGGGTTTAGAGATGACGATCTTTGGATTTGGAACCTAGATGAAAGGCCAAGAAAATGATGATGATACCTACTTTTGAAATCTGAAATTTCAAAAACCAAGAAAACGTCAACCAGGTGAGATGGGAATGAAACGAGAAAGGAAACTGACGTTCGCTRATGGTTCAGTAAAAGGTTTTGTTGTTCTAAACGCTAATGAAAGCAAAAGTAGAAAATGACAAAAGACCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21691</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>988329</contig_pos>
        <strand></strand>
        <context>AAGAGAGATA[A/G]GRAAAAGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAGGCTTTTTTTGCGGCACTGGCGGTAAACAGGGATTTAAAGAGAGATA</left_flank>
        <right_flank>GAAAAAGAAAACCCGGAAAAGTTTGTGAAAAATGGAAAGCAAAACAAAAC</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAACTACTTTTTAAGGAGAGTTCTCAATCCAGATCGGATGAAAAACTCAAGTCAGGGAAGCAGAAAATCAGAAAAGGAAATTGAGTTTTCTGAGTCTCATAGAGTTCATTGCTCCAGTTAGACAATGAACTCTGGCACGAACAATAAGAAGATAAATCATGAAAAACCTCAAAAATCGCAGTCTAGCATCATTGAATCAGGTATTTAAAATAACTTTTTTATCAATCACGCTTTTCAAAATACGCAATCTCTTCAGAAATCTATTTGAAGTAGAAAAGAAGAGCCTATATTGACTCACTTTCAAGTTTTTTTCTCTTTTTCCATTTACTAAGCTAACTAAGCTAACTAAACTGAGAAATACTGAATCACTATTTTTTTCAAAGTCTTTTTCTTCTCTATTTTTTTGGATTGGCTGTTCATCTAGTTGAAAATAGTGCAAACGGCTAGTGAGGCTTTTTTTGCGGCACTGGCGGTAAACAGGGATTTAAAGAGAGATAAGAAAAAGAAAACCCGGAAAAGTTTGTGAAAAATGGAAAGCAAAACAAAACGAGTGCTTCCTGAAATTCATCAACTTCTTTTTTTTGACAACTCGAAGGATCATTTATTAGTTGTGTTCCTCCCCAGTGAGTCTAACACTTTGTAACCATCTGAATATACTTGTGGTTGGAGAAGATATGCTATAAAGAAACAAAAAAGAGAATTCTTCGAAAAAACCCATTGCTCCTCCGGGATTATTAGTATTTTTCTACACGTTGTGGTTCGTAGCAAAGTGTAACGTTGCTCGTAAAATTTATTGCAGGAATTGGTGGGATAAAAGGTCACAAGTTTTGCACTGCTTTCAATATTTCACGTCCTCGCCTAATCTGGATAATTTTTCACAAGTGTAAGGTTGGGGTGCTCAATTAGGCAGAGGTCAGTCTGTTTTGCAGCACACGTTTTTCTTCTTTTTTTCTTGCTCTTACAATGGGCTAGAAAGCTGCTTTTATGCAGATCAAGTT</canonical>
            <polymorphic>TTGAACTACTTTTTAAGGAGAGTTCTCAATCCAGATCGGATGAAAAACTCAAGTCAGGGAAGCAGAAAATCAGAAAAGGAAATTGAGTTTTCTGAGTCTCATAGAGTTCATTGCTCCAGTTAGACAATGAACTCTGGCACGAACAATAAGAAGATAAATCATGAAAAACCTCAAAAATCGCAGTCTAGCATCATTGAATCAGGTATTTAAAATAACTTTTTTATCAATCACGCTTTTCAAAATACGCAATCTCTTCAGAAATCTATTTGAAGTAGAAAAGAAGAGCCTATATTGACTCACTTTCAAGTTTTTTTCTCTTTTTCCATTTACTAAGCTAACTAAGCTAACTAAACTGAGAAATACTGAATCACTATTTTTTTCAAAGTCTTTTTCTTCTCTATTTTTTTGGATTGGCTGTTCATCTAGTTGAAAATAGTGCAAACGGCTAGTGAGGCTTTTTTTGCGGCACTGGCGGTAAACAGGGATTTAAAGAGAGATARGAAAAAGAAAACCCGGAAAAGTTTGTGAAAAATGGAAAGCAAAACAAAACGAGTGCTTCCTGAAATTCATCAACTTCTTTTTTTTGACAACTCGAAGGATCATTTATTAGTTGTGTTCCTCCCCAGTGAGTCTAACACTTTGTAACCATCTGAATATACTTGTGGTTGGAGAAGATATGCTATAAAGAAACAAAAAAGAGAATTCTTCGAAAAAACCCATTGCTCCTCCGGGATTATTAGTATTTTTCTACACGTTGTGGTTCGTAGCAAAGTGTAACGTTGCTCGTAAAATTTATTGCAGGAATTGGTGGGATAAAAGGTCACAAGTTTTGCACTGCTTTCAATATTTCACGTCCTCGCCTAATCTGGATAATTTTTCACAAGTGTAAGGTTGGGGTGCTCAATTAGGCAGAGGTCAGTCTGTTTTGCAGCACACGTTTTTCTTCTTTTTTTCTTGCTCTTACAATGGGCTAGAAAGCTGCTTTTATGCAGATCAAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCTAGTTGAAAATAGTGCAAAC</pcr_primer_p1>
		<pcr_primer_p2>TCCAACCACAAGTATATTCAGAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CATCTAGTTGAAAATAGTGCAAACGGCTAGTGAGGCTTTTTTTGCGGCACTGGCGGTAAACAGGGATTTAAAGAGAGATAAGAAAAAGAAAACCCGGAAAAGTTTGTGAAAAATGGAAAGCAAAACAAAACGAGTGCTTCCTGAAATTCATCAACTTCTTTTTTTTGACAACTCGAAGGATCATTTATTAGTTGTGTTCCTCCCCAGTGAGTCTAACACTTTGTAACCATCTGAATATACTTGTGGTTGGA</canonical_amplicon>
		<polymorphic_amplicon>CATCTAGTTGAAAATAGTGCAAACGGCTAGTGAGGCTTTTTTTGCGGCACTGGCGGTAAACAGGGATTTAAAGAGAGATARGAAAAAGAAAACCCGGAAAAGTTTGTGAAAAATGGAAAGCAAAACAAAACGAGTGCTTCCTGAAATTCATCAACTTCTTTTTTTTGACAACTCGAAGGATCATTTATTAGTTGTGTTCCTCCCCAGTGAGTCTAACACTTTGTAACCATCTGAATATACTTGTGGTTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21692</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>988349</contig_pos>
        <strand></strand>
        <context>AACCCGGAAA[A/G]GTTTGTGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGCGGTAAACAGGGATTTAAAGAGAGATAAGAAAAAGAAAACCCGGAAA</left_flank>
        <right_flank>GTTTGTGAAAAATGGAAAGCAAAACAAAACGAGTGCTTCCTGAAATTCAT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTCTCAATCCAGATCGGATGAAAAACTCAAGTCAGGGAAGCAGAAAATCAGAAAAGGAAATTGAGTTTTCTGAGTCTCATAGAGTTCATTGCTCCAGTTAGACAATGAACTCTGGCACGAACAATAAGAAGATAAATCATGAAAAACCTCAAAAATCGCAGTCTAGCATCATTGAATCAGGTATTTAAAATAACTTTTTTATCAATCACGCTTTTCAAAATACGCAATCTCTTCAGAAATCTATTTGAAGTAGAAAAGAAGAGCCTATATTGACTCACTTTCAAGTTTTTTTCTCTTTTTCCATTTACTAAGCTAACTAAGCTAACTAAACTGAGAAATACTGAATCACTATTTTTTTCAAAGTCTTTTTCTTCTCTATTTTTTTGGATTGGCTGTTCATCTAGTTGAAAATAGTGCAAACGGCTAGTGAGGCTTTTTTTGCGGCACTGGCGGTAAACAGGGATTTAAAGAGAGATAAGAAAAAGAAAACCCGGAAAAGTTTGTGAAAAATGGAAAGCAAAACAAAACGAGTGCTTCCTGAAATTCATCAACTTCTTTTTTTTGACAACTCGAAGGATCATTTATTAGTTGTGTTCCTCCCCAGTGAGTCTAACACTTTGTAACCATCTGAATATACTTGTGGTTGGAGAAGATATGCTATAAAGAAACAAAAAAGAGAATTCTTCGAAAAAACCCATTGCTCCTCCGGGATTATTAGTATTTTTCTACACGTTGTGGTTCGTAGCAAAGTGTAACGTTGCTCGTAAAATTTATTGCAGGAATTGGTGGGATAAAAGGTCACAAGTTTTGCACTGCTTTCAATATTTCACGTCCTCGCCTAATCTGGATAATTTTTCACAAGTGTAAGGTTGGGGTGCTCAATTAGGCAGAGGTCAGTCTGTTTTGCAGCACACGTTTTTCTTCTTTTTTTCTTGCTCTTACAATGGGCTAGAAAGCTGCTTTTATGCAGATCAAGTTGGACTGTTTACTATTTGAAA</canonical>
            <polymorphic>AGTTCTCAATCCAGATCGGATGAAAAACTCAAGTCAGGGAAGCAGAAAATCAGAAAAGGAAATTGAGTTTTCTGAGTCTCATAGAGTTCATTGCTCCAGTTAGACAATGAACTCTGGCACGAACAATAAGAAGATAAATCATGAAAAACCTCAAAAATCGCAGTCTAGCATCATTGAATCAGGTATTTAAAATAACTTTTTTATCAATCACGCTTTTCAAAATACGCAATCTCTTCAGAAATCTATTTGAAGTAGAAAAGAAGAGCCTATATTGACTCACTTTCAAGTTTTTTTCTCTTTTTCCATTTACTAAGCTAACTAAGCTAACTAAACTGAGAAATACTGAATCACTATTTTTTTCAAAGTCTTTTTCTTCTCTATTTTTTTGGATTGGCTGTTCATCTAGTTGAAAATAGTGCAAACGGCTAGTGAGGCTTTTTTTGCGGCACTGGCGGTAAACAGGGATTTAAAGAGAGATAAGAAAAAGAAAACCCGGAAARGTTTGTGAAAAATGGAAAGCAAAACAAAACGAGTGCTTCCTGAAATTCATCAACTTCTTTTTTTTGACAACTCGAAGGATCATTTATTAGTTGTGTTCCTCCCCAGTGAGTCTAACACTTTGTAACCATCTGAATATACTTGTGGTTGGAGAAGATATGCTATAAAGAAACAAAAAAGAGAATTCTTCGAAAAAACCCATTGCTCCTCCGGGATTATTAGTATTTTTCTACACGTTGTGGTTCGTAGCAAAGTGTAACGTTGCTCGTAAAATTTATTGCAGGAATTGGTGGGATAAAAGGTCACAAGTTTTGCACTGCTTTCAATATTTCACGTCCTCGCCTAATCTGGATAATTTTTCACAAGTGTAAGGTTGGGGTGCTCAATTAGGCAGAGGTCAGTCTGTTTTGCAGCACACGTTTTTCTTCTTTTTTTCTTGCTCTTACAATGGGCTAGAAAGCTGCTTTTATGCAGATCAAGTTGGACTGTTTACTATTTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCTAGTTGAAAATAGTGCAAAC</pcr_primer_p1>
		<pcr_primer_p2>TCCAACCACAAGTATATTCAGAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CATCTAGTTGAAAATAGTGCAAACGGCTAGTGAGGCTTTTTTTGCGGCACTGGCGGTAAACAGGGATTTAAAGAGAGATAAGAAAAAGAAAACCCGGAAAAGTTTGTGAAAAATGGAAAGCAAAACAAAACGAGTGCTTCCTGAAATTCATCAACTTCTTTTTTTTGACAACTCGAAGGATCATTTATTAGTTGTGTTCCTCCCCAGTGAGTCTAACACTTTGTAACCATCTGAATATACTTGTGGTTGGA</canonical_amplicon>
		<polymorphic_amplicon>CATCTAGTTGAAAATAGTGCAAACGGCTAGTGAGGCTTTTTTTGCGGCACTGGCGGTAAACAGGGATTTAAAGAGAGATAAGAAAAAGAAAACCCGGAAARGTTTGTGAAAAATGGAAAGCAAAACAAAACGAGTGCTTCCTGAAATTCATCAACTTCTTTTTTTTGACAACTCGAAGGATCATTTATTAGTTGTGTTCCTCCCCAGTGAGTCTAACACTTTGTAACCATCTGAATATACTTGTGGTTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21693</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>988583</contig_pos>
        <strand>+</strand>
        <context>TTTTCTACAC[G/T]TTGTGGTTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTTCGAAAAAACCCATTGCTCCTCCGGGATTATTAGTATTTTTCTACAC</left_flank>
        <right_flank>TTGTGGTTCGTAGCAAAGTGTAACGTTGCTCGTAAAATTTATTGCAGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGAAATCTATTTGAAGTAGAAAAGAAGAGCCTATATTGACTCACTTTCAAGTTTTTTTCTCTTTTTCCATTTACTAAGCTAACTAAGCTAACTAAACTGAGAAATACTGAATCACTATTTTTTTCAAAGTCTTTTTCTTCTCTATTTTTTTGGATTGGCTGTTCATCTAGTTGAAAATAGTGCAAACGGCTAGTGAGGCTTTTTTTGCGGCACTGGCGGTAAACAGGGATTTAAAGAGAGATAAGAAAAAGAAAACCCGGAAAAGTTTGTGAAAAATGGAAAGCAAAACAAAACGAGTGCTTCCTGAAATTCATCAACTTCTTTTTTTTGACAACTCGAAGGATCATTTATTAGTTGTGTTCCTCCCCAGTGAGTCTAACACTTTGTAACCATCTGAATATACTTGTGGTTGGAGAAGATATGCTATAAAGAAACAAAAAAGAGAATTCTTCGAAAAAACCCATTGCTCCTCCGGGATTATTAGTATTTTTCTACACGTTGTGGTTCGTAGCAAAGTGTAACGTTGCTCGTAAAATTTATTGCAGGAATTGGTGGGATAAAAGGTCACAAGTTTTGCACTGCTTTCAATATTTCACGTCCTCGCCTAATCTGGATAATTTTTCACAAGTGTAAGGTTGGGGTGCTCAATTAGGCAGAGGTCAGTCTGTTTTGCAGCACACGTTTTTCTTCTTTTTTTCTTGCTCTTACAATGGGCTAGAAAGCTGCTTTTATGCAGATCAAGTTGGACTGTTTACTATTTGAAAAATCGATGTAGAACGAATGAATAAATACCTTTTTGAATTTTTTTTTCTGAACGAATGGGCACATGACACTCCCATAAATACAACATTGGCTTGAGGCCACAATTCATTTTTAATTTGTATTTCAGAATCACAATAACTCTTGTGACGAATATCCTTAGTTTTTTTTTTCAGTAAACAGAAAGAGTTCAAATGACTCATCGCGGTTTTTCAAAAAGAATTGGAGAAGTTCAGAGA</canonical>
            <polymorphic>TCAGAAATCTATTTGAAGTAGAAAAGAAGAGCCTATATTGACTCACTTTCAAGTTTTTTTCTCTTTTTCCATTTACTAAGCTAACTAAGCTAACTAAACTGAGAAATACTGAATCACTATTTTTTTCAAAGTCTTTTTCTTCTCTATTTTTTTGGATTGGCTGTTCATCTAGTTGAAAATAGTGCAAACGGCTAGTGAGGCTTTTTTTGCGGCACTGGCGGTAAACAGGGATTTAAAGAGAGATAAGAAAAAGAAAACCCGGAAAAGTTTGTGAAAAATGGAAAGCAAAACAAAACGAGTGCTTCCTGAAATTCATCAACTTCTTTTTTTTGACAACTCGAAGGATCATTTATTAGTTGTGTTCCTCCCCAGTGAGTCTAACACTTTGTAACCATCTGAATATACTTGTGGTTGGAGAAGATATGCTATAAAGAAACAAAAAAGAGAATTCTTCGAAAAAACCCATTGCTCCTCCGGGATTATTAGTATTTTTCTACACKTTGTGGTTCGTAGCAAAGTGTAACGTTGCTCGTAAAATTTATTGCAGGAATTGGTGGGATAAAAGGTCACAAGTTTTGCACTGCTTTCAATATTTCACGTCCTCGCCTAATCTGGATAATTTTTCACAAGTGTAAGGTTGGGGTGCTCAATTAGGCAGAGGTCAGTCTGTTTTGCAGCACACGTTTTTCTTCTTTTTTTCTTGCTCTTACAATGGGCTAGAAAGCTGCTTTTATGCAGATCAAGTTGGACTGTTTACTATTTGAAAAATCGATGTAGAACGAATGAATAAATACCTTTTTGAATTTTTTTTTCTGAACGAATGGGCACATGACACTCCCATAAATACAACATTGGCTTGAGGCCACAATTCATTTTTAATTTGTATTTCAGAATCACAATAACTCTTGTGACGAATATCCTTAGTTTTTTTTTTCAGTAAACAGAAAGAGTTCAAATGACTCATCGCGGTTTTTCAAAAAGAATTGGAGAAGTTCAGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>496 321 183</canonical_bands>
                <polymorphic_bands>679 321</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>498 319 84 74 25</canonical_bands>
                <polymorphic_bands>523 319 84 74</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAACTCGAAGGATCATTTATTA</pcr_primer_p1>
		<pcr_primer_p2>GCAAAACTTGTGACCTTTTATC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACAACTCGAAGGATCATTTATTAGTTGTGTTCCTCCCCAGTGAGTCTAACACTTTGTAACCATCTGAATATACTTGTGGTTGGAGAAGATATGCTATAAAGAAACAAAAAAGAGAATTCTTCGAAAAAACCCATTGCTCCTCCGGGATTATTAGTATTTTTCTACACGTTGTGGTTCGTAGCAAAGTGTAACGTTGCTCGTAAAATTTATTGCAGGAATTGGTGGGATAAAAGGTCACAAGTTTTGC</canonical_amplicon>
		<polymorphic_amplicon>ACAACTCGAAGGATCATTTATTAGTTGTGTTCCTCCCCAGTGAGTCTAACACTTTGTAACCATCTGAATATACTTGTGGTTGGAGAAGATATGCTATAAAGAAACAAAAAAGAGAATTCTTCGAAAAAACCCATTGCTCCTCCGGGATTATTAGTATTTTTCTACACKTTGTGGTTCGTAGCAAAGTGTAACGTTGCTCGTAAAATTTATTGCAGGAATTGGTGGGATAAAAGGTCACAAGTTTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21694</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1012825</contig_pos>
        <strand>+</strand>
        <context>TCTGAATTGA[G/T]GTCACCTCCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCCCTTCTCAGCTTCCATAAAAACTCCCAGTGATTCGAAGTCTGAATTGA</left_flank>
        <right_flank>GTCACCTCCCATTCCAACAATTTTATTACACTGGTCTTCATTCGAATATT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAAGCTACAAGAATACTGTAAGAGAAAGATCTAAAAGTTTTTGCCGGTGTTTTTTTGATAACAGGTCGCTTTCTCTGGTCTGAATAACTCAAGGTTGCCTTTTTATATCTGTTCCTGATTATTCGAGTATCATGATCTGGTGGAATTCTTGAATATTTGGATTCTTTGGGCTGATATAAACTAAAACTATGATCAAATTTTTATCGGTTTGAGACACCCTGTCGTGACATTGGATGCTCGCAAACAAATGAAAGATCGTTTTTAGTAGTTTGAATTTTTGAACCGATGACAATCTAATTTCTGTACCAAACTACATATTCCTCTCTTTTTGGGACATTGTTAAACGGAGAGATCTGATTTCTTTCAATCAAACCAAGAATCATATGATATCTTCCCAAAAAAATCAATTGGCCCTGATGTTGACAGGTCAATATTGACTTTTATTGTCCCCTTCTCAGCTTCCATAAAAACTCCCAGTGATTCGAAGTCTGAATTGAGGTCACCTCCCATTCCAACAATTTTATTACACTGGTCTTCATTCGAATATTCTTCGCCGTGTGTGACTCATTGAACCATTTATTTTCGAAACCGATGAATATGCGGCAACAACGAAAACTTTTTTTGGAAAAAGGTGTCGCATTATTTGCCTAGCAAATGACGTGTTTCACAACTTTGCTGATACTGAAATGATATAAAATACCTCGACCTATCAGCCTATTCCATCAGTGCCTCGTCTTGTGACATTTGCCTTTTTTATTCCTTTTCCGTAACTTTCCATATCAGTTTTTGTTACAATCGTTTCATTTCGCATTCTTACTTCAACGTCTCAATTTCTTTCTTCAACCACAACTCATTTTTTTTTTCTGTTTTCAGTCTTCAATTCACCATGGCTTACAACCCCTACAACGGATCTTACCCATACCCACCACCAGTTGGATACGTGCCACCACCAATGGGATATGCTCCACCACCAATTGCTCCAGTTCCAGTTGTAGCTC</canonical>
            <polymorphic>AGAAAGCTACAAGAATACTGTAAGAGAAAGATCTAAAAGTTTTTGCCGGTGTTTTTTTGATAACAGGTCGCTTTCTCTGGTCTGAATAACTCAAGGTTGCCTTTTTATATCTGTTCCTGATTATTCGAGTATCATGATCTGGTGGAATTCTTGAATATTTGGATTCTTTGGGCTGATATAAACTAAAACTATGATCAAATTTTTATCGGTTTGAGACACCCTGTCGTGACATTGGATGCTCGCAAACAAATGAAAGATCGTTTTTAGTAGTTTGAATTTTTGAACCGATGACAATCTAATTTCTGTACCAAACTACATATTCCTCTCTTTTTGGGACATTGTTAAACGGAGAGATCTGATTTCTTTCAATCAAACCAAGAATCATATGATATCTTCCCAAAAAAATCAATTGGCCCTGATGTTGACAGGTCAATATTGACTTTTATTGTCCCCTTCTCAGCTTCCATAAAAACTCCCAGTGATTCGAAGTCTGAATTGAKGTCACCTCCCATTCCAACAATTTTATTACACTGGTCTTCATTCGAATATTCTTCGCCGTGTGTGACTCATTGAACCATTTATTTTCGAAACCGATGAATATGCGGCAACAACGAAAACTTTTTTTGGAAAAAGGTGTCGCATTATTTGCCTAGCAAATGACGTGTTTCACAACTTTGCTGATACTGAAATGATATAAAATACCTCGACCTATCAGCCTATTCCATCAGTGCCTCGTCTTGTGACATTTGCCTTTTTTATTCCTTTTCCGTAACTTTCCATATCAGTTTTTGTTACAATCGTTTCATTTCGCATTCTTACTTCAACGTCTCAATTTCTTTCTTCAACCACAACTCATTTTTTTTTTCTGTTTTCAGTCTTCAATTCACCATGGCTTACAACCCCTACAACGGATCTTACCCATACCCACCACCAGTTGGATACGTGCCACCACCAATGGGATATGCTCCACCACCAATTGCTCCAGTTCCAGTTGTAGCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGTNACC</site>
                <isoschizomers>
                    <enzyme>BstEII</enzyme>
                    <enzyme>BstPI</enzyme>
                    <enzyme>Eco91I</enzyme>
                    <enzyme>EcoO65I</enzyme>
                    <enzyme>PspEI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGTTAAACGGAGAGATCTGA</pcr_primer_p1>
		<pcr_primer_p2>GAAAATAAATGGTTCAATGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTGTTAAACGGAGAGATCTGATTTCTTTCAATCAAACCAAGAATCATATGATATCTTCCCAAAAAAATCAATTGGCCCTGATGTTGACAGGTCAATATTGACTTTTATTGTCCCCTTCTCAGCTTCCATAAAAACTCCCAGTGATTCGAAGTCTGAATTGAGGTCACCTCCCATTCCAACAATTTTATTACACTGGTCTTCATTCGAATATTCTTCGCCGTGTGTGACTCATTGAACCATTTATTTTC</canonical_amplicon>
		<polymorphic_amplicon>ATTGTTAAACGGAGAGATCTGATTTCTTTCAATCAAACCAAGAATCATATGATATCTTCCCAAAAAAATCAATTGGCCCTGATGTTGACAGGTCAATATTGACTTTTATTGTCCCCTTCTCAGCTTCCATAAAAACTCCCAGTGATTCGAAGTCTGAATTGAKGTCACCTCCCATTCCAACAATTTTATTACACTGGTCTTCATTCGAATATTCTTCGCCGTGTGTGACTCATTGAACCATTTATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21695</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1012858</contig_pos>
        <strand>+</strand>
        <context>TTATTACACT[G/T]KTCTTCATTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCGAAGTCTGAATTGAGGTCACCTCCCATTCCAACAATTTTATTACACT</left_flank>
        <right_flank>GTCTTCATTCGAATATTCTTCGCCGTGTGTGACTCATTGAACCATTTATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAAGTTTTTGCCGGTGTTTTTTTGATAACAGGTCGCTTTCTCTGGTCTGAATAACTCAAGGTTGCCTTTTTATATCTGTTCCTGATTATTCGAGTATCATGATCTGGTGGAATTCTTGAATATTTGGATTCTTTGGGCTGATATAAACTAAAACTATGATCAAATTTTTATCGGTTTGAGACACCCTGTCGTGACATTGGATGCTCGCAAACAAATGAAAGATCGTTTTTAGTAGTTTGAATTTTTGAACCGATGACAATCTAATTTCTGTACCAAACTACATATTCCTCTCTTTTTGGGACATTGTTAAACGGAGAGATCTGATTTCTTTCAATCAAACCAAGAATCATATGATATCTTCCCAAAAAAATCAATTGGCCCTGATGTTGACAGGTCAATATTGACTTTTATTGTCCCCTTCTCAGCTTCCATAAAAACTCCCAGTGATTCGAAGTCTGAATTGAGGTCACCTCCCATTCCAACAATTTTATTACACTGGTCTTCATTCGAATATTCTTCGCCGTGTGTGACTCATTGAACCATTTATTTTCGAAACCGATGAATATGCGGCAACAACGAAAACTTTTTTTGGAAAAAGGTGTCGCATTATTTGCCTAGCAAATGACGTGTTTCACAACTTTGCTGATACTGAAATGATATAAAATACCTCGACCTATCAGCCTATTCCATCAGTGCCTCGTCTTGTGACATTTGCCTTTTTTATTCCTTTTCCGTAACTTTCCATATCAGTTTTTGTTACAATCGTTTCATTTCGCATTCTTACTTCAACGTCTCAATTTCTTTCTTCAACCACAACTCATTTTTTTTTTCTGTTTTCAGTCTTCAATTCACCATGGCTTACAACCCCTACAACGGATCTTACCCATACCCACCACCAGTTGGATACGTGCCACCACCAATGGGATATGCTCCACCACCAATTGCTCCAGTTCCAGTTGTAGCTCCAATCCCAGTGCCAATCGCTACTCCATACATGG</canonical>
            <polymorphic>TAAAAGTTTTTGCCGGTGTTTTTTTGATAACAGGTCGCTTTCTCTGGTCTGAATAACTCAAGGTTGCCTTTTTATATCTGTTCCTGATTATTCGAGTATCATGATCTGGTGGAATTCTTGAATATTTGGATTCTTTGGGCTGATATAAACTAAAACTATGATCAAATTTTTATCGGTTTGAGACACCCTGTCGTGACATTGGATGCTCGCAAACAAATGAAAGATCGTTTTTAGTAGTTTGAATTTTTGAACCGATGACAATCTAATTTCTGTACCAAACTACATATTCCTCTCTTTTTGGGACATTGTTAAACGGAGAGATCTGATTTCTTTCAATCAAACCAAGAATCATATGATATCTTCCCAAAAAAATCAATTGGCCCTGATGTTGACAGGTCAATATTGACTTTTATTGTCCCCTTCTCAGCTTCCATAAAAACTCCCAGTGATTCGAAGTCTGAATTGAGGTCACCTCCCATTCCAACAATTTTATTACACTKGTCTTCATTCGAATATTCTTCGCCGTGTGTGACTCATTGAACCATTTATTTTCGAAACCGATGAATATGCGGCAACAACGAAAACTTTTTTTGGAAAAAGGTGTCGCATTATTTGCCTAGCAAATGACGTGTTTCACAACTTTGCTGATACTGAAATGATATAAAATACCTCGACCTATCAGCCTATTCCATCAGTGCCTCGTCTTGTGACATTTGCCTTTTTTATTCCTTTTCCGTAACTTTCCATATCAGTTTTTGTTACAATCGTTTCATTTCGCATTCTTACTTCAACGTCTCAATTTCTTTCTTCAACCACAACTCATTTTTTTTTTCTGTTTTCAGTCTTCAATTCACCATGGCTTACAACCCCTACAACGGATCTTACCCATACCCACCACCAGTTGGATACGTGCCACCACCAATGGGATATGCTCCACCACCAATTGCTCCAGTTCCAGTTGTAGCTCCAATCCCAGTGCCAATCGCTACTCCATACATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTAAACGGAGAGATCTGATT</pcr_primer_p1>
		<pcr_primer_p2>TTTCGAAAATAAATGGTTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGTTAAACGGAGAGATCTGATTTCTTTCAATCAAACCAAGAATCATATGATATCTTCCCAAAAAAATCAATTGGCCCTGATGTTGACAGGTCAATATTGACTTTTATTGTCCCCTTCTCAGCTTCCATAAAAACTCCCAGTGATTCGAAGTCTGAATTGAGGTCACCTCCCATTCCAACAATTTTATTACACTGGTCTTCATTCGAATATTCTTCGCCGTGTGTGACTCATTGAACCATTTATTTTCGAAA</canonical_amplicon>
		<polymorphic_amplicon>TGTTAAACGGAGAGATCTGATTTCTTTCAATCAAACCAAGAATCATATGATATCTTCCCAAAAAAATCAATTGGCCCTGATGTTGACAGGTCAATATTGACTTTTATTGTCCCCTTCTCAGCTTCCATAAAAACTCCCAGTGATTCGAAGTCTGAATTGAGGTCACCTCCCATTCCAACAATTTTATTACACTKGTCTTCATTCGAATATTCTTCGCCGTGTGTGACTCATTGAACCATTTATTTTCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21696</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1012859</contig_pos>
        <strand>+</strand>
        <context>TATTACACTK[G/T]TCTTCATTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGAAGTCTGAATTGAGGTCACCTCCCATTCCAACAATTTTATTACACTG</left_flank>
        <right_flank>TCTTCATTCGAATATTCTTCGCCGTGTGTGACTCATTGAACCATTTATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGTTTTTGCCGGTGTTTTTTTGATAACAGGTCGCTTTCTCTGGTCTGAATAACTCAAGGTTGCCTTTTTATATCTGTTCCTGATTATTCGAGTATCATGATCTGGTGGAATTCTTGAATATTTGGATTCTTTGGGCTGATATAAACTAAAACTATGATCAAATTTTTATCGGTTTGAGACACCCTGTCGTGACATTGGATGCTCGCAAACAAATGAAAGATCGTTTTTAGTAGTTTGAATTTTTGAACCGATGACAATCTAATTTCTGTACCAAACTACATATTCCTCTCTTTTTGGGACATTGTTAAACGGAGAGATCTGATTTCTTTCAATCAAACCAAGAATCATATGATATCTTCCCAAAAAAATCAATTGGCCCTGATGTTGACAGGTCAATATTGACTTTTATTGTCCCCTTCTCAGCTTCCATAAAAACTCCCAGTGATTCGAAGTCTGAATTGAGGTCACCTCCCATTCCAACAATTTTATTACACTGGTCTTCATTCGAATATTCTTCGCCGTGTGTGACTCATTGAACCATTTATTTTCGAAACCGATGAATATGCGGCAACAACGAAAACTTTTTTTGGAAAAAGGTGTCGCATTATTTGCCTAGCAAATGACGTGTTTCACAACTTTGCTGATACTGAAATGATATAAAATACCTCGACCTATCAGCCTATTCCATCAGTGCCTCGTCTTGTGACATTTGCCTTTTTTATTCCTTTTCCGTAACTTTCCATATCAGTTTTTGTTACAATCGTTTCATTTCGCATTCTTACTTCAACGTCTCAATTTCTTTCTTCAACCACAACTCATTTTTTTTTTCTGTTTTCAGTCTTCAATTCACCATGGCTTACAACCCCTACAACGGATCTTACCCATACCCACCACCAGTTGGATACGTGCCACCACCAATGGGATATGCTCCACCACCAATTGCTCCAGTTCCAGTTGTAGCTCCAATCCCAGTGCCAATCGCTACTCCATACATGGC</canonical>
            <polymorphic>AAAAGTTTTTGCCGGTGTTTTTTTGATAACAGGTCGCTTTCTCTGGTCTGAATAACTCAAGGTTGCCTTTTTATATCTGTTCCTGATTATTCGAGTATCATGATCTGGTGGAATTCTTGAATATTTGGATTCTTTGGGCTGATATAAACTAAAACTATGATCAAATTTTTATCGGTTTGAGACACCCTGTCGTGACATTGGATGCTCGCAAACAAATGAAAGATCGTTTTTAGTAGTTTGAATTTTTGAACCGATGACAATCTAATTTCTGTACCAAACTACATATTCCTCTCTTTTTGGGACATTGTTAAACGGAGAGATCTGATTTCTTTCAATCAAACCAAGAATCATATGATATCTTCCCAAAAAAATCAATTGGCCCTGATGTTGACAGGTCAATATTGACTTTTATTGTCCCCTTCTCAGCTTCCATAAAAACTCCCAGTGATTCGAAGTCTGAATTGAGGTCACCTCCCATTCCAACAATTTTATTACACTGKTCTTCATTCGAATATTCTTCGCCGTGTGTGACTCATTGAACCATTTATTTTCGAAACCGATGAATATGCGGCAACAACGAAAACTTTTTTTGGAAAAAGGTGTCGCATTATTTGCCTAGCAAATGACGTGTTTCACAACTTTGCTGATACTGAAATGATATAAAATACCTCGACCTATCAGCCTATTCCATCAGTGCCTCGTCTTGTGACATTTGCCTTTTTTATTCCTTTTCCGTAACTTTCCATATCAGTTTTTGTTACAATCGTTTCATTTCGCATTCTTACTTCAACGTCTCAATTTCTTTCTTCAACCACAACTCATTTTTTTTTTCTGTTTTCAGTCTTCAATTCACCATGGCTTACAACCCCTACAACGGATCTTACCCATACCCACCACCAGTTGGATACGTGCCACCACCAATGGGATATGCTCCACCACCAATTGCTCCAGTTCCAGTTGTAGCTCCAATCCCAGTGCCAATCGCTACTCCATACATGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTAAACGGAGAGATCTGATT</pcr_primer_p1>
		<pcr_primer_p2>TTTCGAAAATAAATGGTTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGTTAAACGGAGAGATCTGATTTCTTTCAATCAAACCAAGAATCATATGATATCTTCCCAAAAAAATCAATTGGCCCTGATGTTGACAGGTCAATATTGACTTTTATTGTCCCCTTCTCAGCTTCCATAAAAACTCCCAGTGATTCGAAGTCTGAATTGAGGTCACCTCCCATTCCAACAATTTTATTACACTGGTCTTCATTCGAATATTCTTCGCCGTGTGTGACTCATTGAACCATTTATTTTCGAAA</canonical_amplicon>
		<polymorphic_amplicon>TGTTAAACGGAGAGATCTGATTTCTTTCAATCAAACCAAGAATCATATGATATCTTCCCAAAAAAATCAATTGGCCCTGATGTTGACAGGTCAATATTGACTTTTATTGTCCCCTTCTCAGCTTCCATAAAAACTCCCAGTGATTCGAAGTCTGAATTGAGGTCACCTCCCATTCCAACAATTTTATTACACTGKTCTTCATTCGAATATTCTTCGCCGTGTGTGACTCATTGAACCATTTATTTTCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21697</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1012953</contig_pos>
        <strand>+</strand>
        <context>CTTTTTTTGG[A/G]AAAAGGTGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTATTTTCGAAACCGATGAATATGCGGCAACAACGAAAACTTTTTTTGG</left_flank>
        <right_flank>AAAAGGTGTCGCATTATTTGCCTAGCAAATGACGTGTTTCACAACTTTGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATCATGATCTGGTGGAATTCTTGAATATTTGGATTCTTTGGGCTGATATAAACTAAAACTATGATCAAATTTTTATCGGTTTGAGACACCCTGTCGTGACATTGGATGCTCGCAAACAAATGAAAGATCGTTTTTAGTAGTTTGAATTTTTGAACCGATGACAATCTAATTTCTGTACCAAACTACATATTCCTCTCTTTTTGGGACATTGTTAAACGGAGAGATCTGATTTCTTTCAATCAAACCAAGAATCATATGATATCTTCCCAAAAAAATCAATTGGCCCTGATGTTGACAGGTCAATATTGACTTTTATTGTCCCCTTCTCAGCTTCCATAAAAACTCCCAGTGATTCGAAGTCTGAATTGAGGTCACCTCCCATTCCAACAATTTTATTACACTGGTCTTCATTCGAATATTCTTCGCCGTGTGTGACTCATTGAACCATTTATTTTCGAAACCGATGAATATGCGGCAACAACGAAAACTTTTTTTGGAAAAAGGTGTCGCATTATTTGCCTAGCAAATGACGTGTTTCACAACTTTGCTGATACTGAAATGATATAAAATACCTCGACCTATCAGCCTATTCCATCAGTGCCTCGTCTTGTGACATTTGCCTTTTTTATTCCTTTTCCGTAACTTTCCATATCAGTTTTTGTTACAATCGTTTCATTTCGCATTCTTACTTCAACGTCTCAATTTCTTTCTTCAACCACAACTCATTTTTTTTTTCTGTTTTCAGTCTTCAATTCACCATGGCTTACAACCCCTACAACGGATCTTACCCATACCCACCACCAGTTGGATACGTGCCACCACCAATGGGATATGCTCCACCACCAATTGCTCCAGTTCCAGTTGTAGCTCCAATCCCAGTGCCAATCGCTACTCCATACATGGCTCCACCAGTCTATGGACCACCACCAGTCGTTGTGATTGAGGAGCCATACCATCATCACCACTGGAACCCATTTCATCATCACCATCATCATTGC</canonical>
            <polymorphic>GTATCATGATCTGGTGGAATTCTTGAATATTTGGATTCTTTGGGCTGATATAAACTAAAACTATGATCAAATTTTTATCGGTTTGAGACACCCTGTCGTGACATTGGATGCTCGCAAACAAATGAAAGATCGTTTTTAGTAGTTTGAATTTTTGAACCGATGACAATCTAATTTCTGTACCAAACTACATATTCCTCTCTTTTTGGGACATTGTTAAACGGAGAGATCTGATTTCTTTCAATCAAACCAAGAATCATATGATATCTTCCCAAAAAAATCAATTGGCCCTGATGTTGACAGGTCAATATTGACTTTTATTGTCCCCTTCTCAGCTTCCATAAAAACTCCCAGTGATTCGAAGTCTGAATTGAGGTCACCTCCCATTCCAACAATTTTATTACACTGGTCTTCATTCGAATATTCTTCGCCGTGTGTGACTCATTGAACCATTTATTTTCGAAACCGATGAATATGCGGCAACAACGAAAACTTTTTTTGGRAAAAGGTGTCGCATTATTTGCCTAGCAAATGACGTGTTTCACAACTTTGCTGATACTGAAATGATATAAAATACCTCGACCTATCAGCCTATTCCATCAGTGCCTCGTCTTGTGACATTTGCCTTTTTTATTCCTTTTCCGTAACTTTCCATATCAGTTTTTGTTACAATCGTTTCATTTCGCATTCTTACTTCAACGTCTCAATTTCTTTCTTCAACCACAACTCATTTTTTTTTTCTGTTTTCAGTCTTCAATTCACCATGGCTTACAACCCCTACAACGGATCTTACCCATACCCACCACCAGTTGGATACGTGCCACCACCAATGGGATATGCTCCACCACCAATTGCTCCAGTTCCAGTTGTAGCTCCAATCCCAGTGCCAATCGCTACTCCATACATGGCTCCACCAGTCTATGGACCACCACCAGTCGTTGTGATTGAGGAGCCATACCATCATCACCACTGGAACCCATTTCATCATCACCATCATCATTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATTCCAACAATTTTATTACAC</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGGCAAATGTCACAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCATTCCAACAATTTTATTACACTGGTCTTCATTCGAATATTCTTCGCCGTGTGTGACTCATTGAACCATTTATTTTCGAAACCGATGAATATGCGGCAACAACGAAAACTTTTTTTGGAAAAAGGTGTCGCATTATTTGCCTAGCAAATGACGTGTTTCACAACTTTGCTGATACTGAAATGATATAAAATACCTCGACCTATCAGCCTATTCCATCAGTGCCTCGTCTTGTGACATTTGCCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CCATTCCAACAATTTTATTACACTGGTCTTCATTCGAATATTCTTCGCCGTGTGTGACTCATTGAACCATTTATTTTCGAAACCGATGAATATGCGGCAACAACGAAAACTTTTTTTGGRAAAAGGTGTCGCATTATTTGCCTAGCAAATGACGTGTTTCACAACTTTGCTGATACTGAAATGATATAAAATACCTCGACCTATCAGCCTATTCCATCAGTGCCTCGTCTTGTGACATTTGCCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21698</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1013021</contig_pos>
        <strand>+</strand>
        <context>GAAATGATAT[A/C]AAATACCTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGCCTAGCAAATGACGTGTTTCACAACTTTGCTGATACTGAAATGATAT</left_flank>
        <right_flank>AAATACCTCGACCTATCAGCCTATTCCATCAGTGCCTCGTCTTGTGACAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTTTATCGGTTTGAGACACCCTGTCGTGACATTGGATGCTCGCAAACAAATGAAAGATCGTTTTTAGTAGTTTGAATTTTTGAACCGATGACAATCTAATTTCTGTACCAAACTACATATTCCTCTCTTTTTGGGACATTGTTAAACGGAGAGATCTGATTTCTTTCAATCAAACCAAGAATCATATGATATCTTCCCAAAAAAATCAATTGGCCCTGATGTTGACAGGTCAATATTGACTTTTATTGTCCCCTTCTCAGCTTCCATAAAAACTCCCAGTGATTCGAAGTCTGAATTGAGGTCACCTCCCATTCCAACAATTTTATTACACTGGTCTTCATTCGAATATTCTTCGCCGTGTGTGACTCATTGAACCATTTATTTTCGAAACCGATGAATATGCGGCAACAACGAAAACTTTTTTTGGAAAAAGGTGTCGCATTATTTGCCTAGCAAATGACGTGTTTCACAACTTTGCTGATACTGAAATGATATAAAATACCTCGACCTATCAGCCTATTCCATCAGTGCCTCGTCTTGTGACATTTGCCTTTTTTATTCCTTTTCCGTAACTTTCCATATCAGTTTTTGTTACAATCGTTTCATTTCGCATTCTTACTTCAACGTCTCAATTTCTTTCTTCAACCACAACTCATTTTTTTTTTCTGTTTTCAGTCTTCAATTCACCATGGCTTACAACCCCTACAACGGATCTTACCCATACCCACCACCAGTTGGATACGTGCCACCACCAATGGGATATGCTCCACCACCAATTGCTCCAGTTCCAGTTGTAGCTCCAATCCCAGTGCCAATCGCTACTCCATACATGGCTCCACCAGTCTATGGACCACCACCAGTCGTTGTGATTGAGGAGCCATACCATCATCACCACTGGAACCCATTTCATCATCACCATCATCATTGCTAATTCTTAAAAATTTTTCTGGCGGTCGGGCGGATTTTTGGACTAAATGACTATGTGATTTTGTAATG</canonical>
            <polymorphic>AAATTTTTATCGGTTTGAGACACCCTGTCGTGACATTGGATGCTCGCAAACAAATGAAAGATCGTTTTTAGTAGTTTGAATTTTTGAACCGATGACAATCTAATTTCTGTACCAAACTACATATTCCTCTCTTTTTGGGACATTGTTAAACGGAGAGATCTGATTTCTTTCAATCAAACCAAGAATCATATGATATCTTCCCAAAAAAATCAATTGGCCCTGATGTTGACAGGTCAATATTGACTTTTATTGTCCCCTTCTCAGCTTCCATAAAAACTCCCAGTGATTCGAAGTCTGAATTGAGGTCACCTCCCATTCCAACAATTTTATTACACTGGTCTTCATTCGAATATTCTTCGCCGTGTGTGACTCATTGAACCATTTATTTTCGAAACCGATGAATATGCGGCAACAACGAAAACTTTTTTTGGAAAAAGGTGTCGCATTATTTGCCTAGCAAATGACGTGTTTCACAACTTTGCTGATACTGAAATGATATMAAATACCTCGACCTATCAGCCTATTCCATCAGTGCCTCGTCTTGTGACATTTGCCTTTTTTATTCCTTTTCCGTAACTTTCCATATCAGTTTTTGTTACAATCGTTTCATTTCGCATTCTTACTTCAACGTCTCAATTTCTTTCTTCAACCACAACTCATTTTTTTTTTCTGTTTTCAGTCTTCAATTCACCATGGCTTACAACCCCTACAACGGATCTTACCCATACCCACCACCAGTTGGATACGTGCCACCACCAATGGGATATGCTCCACCACCAATTGCTCCAGTTCCAGTTGTAGCTCCAATCCCAGTGCCAATCGCTACTCCATACATGGCTCCACCAGTCTATGGACCACCACCAGTCGTTGTGATTGAGGAGCCATACCATCATCACCACTGGAACCCATTTCATCATCACCATCATCATTGCTAATTCTTAAAAATTTTTCTGGCGGTCGGGCGGATTTTTGGACTAAATGACTATGTGATTTTGTAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATTCCAACAATTTTATTACAC</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGGCAAATGTCACAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCATTCCAACAATTTTATTACACTGGTCTTCATTCGAATATTCTTCGCCGTGTGTGACTCATTGAACCATTTATTTTCGAAACCGATGAATATGCGGCAACAACGAAAACTTTTTTTGGAAAAAGGTGTCGCATTATTTGCCTAGCAAATGACGTGTTTCACAACTTTGCTGATACTGAAATGATATAAAATACCTCGACCTATCAGCCTATTCCATCAGTGCCTCGTCTTGTGACATTTGCCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CCATTCCAACAATTTTATTACACTGGTCTTCATTCGAATATTCTTCGCCGTGTGTGACTCATTGAACCATTTATTTTCGAAACCGATGAATATGCGGCAACAACGAAAACTTTTTTTGGAAAAAGGTGTCGCATTATTTGCCTAGCAAATGACGTGTTTCACAACTTTGCTGATACTGAAATGATATMAAATACCTCGACCTATCAGCCTATTCCATCAGTGCCTCGTCTTGTGACATTTGCCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21699</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1013115</contig_pos>
        <strand></strand>
        <context>TATCAGTTTT[T/A]WTTACAATCG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GTGACATTTGCCTTTTTTATTCCTTTTCCGTAACTTTCCATATCAGTTTT</left_flank>
        <right_flank>GTTACAATCGTTTCATTTCGCATTCTTACTTCAACGTCTCAATTTCTTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAATCTAATTTCTGTACCAAACTACATATTCCTCTCTTTTTGGGACATTGTTAAACGGAGAGATCTGATTTCTTTCAATCAAACCAAGAATCATATGATATCTTCCCAAAAAAATCAATTGGCCCTGATGTTGACAGGTCAATATTGACTTTTATTGTCCCCTTCTCAGCTTCCATAAAAACTCCCAGTGATTCGAAGTCTGAATTGAGGTCACCTCCCATTCCAACAATTTTATTACACTGGTCTTCATTCGAATATTCTTCGCCGTGTGTGACTCATTGAACCATTTATTTTCGAAACCGATGAATATGCGGCAACAACGAAAACTTTTTTTGGAAAAAGGTGTCGCATTATTTGCCTAGCAAATGACGTGTTTCACAACTTTGCTGATACTGAAATGATATAAAATACCTCGACCTATCAGCCTATTCCATCAGTGCCTCGTCTTGTGACATTTGCCTTTTTTATTCCTTTTCCGTAACTTTCCATATCAGTTTTTGTTACAATCGTTTCATTTCGCATTCTTACTTCAACGTCTCAATTTCTTTCTTCAACCACAACTCATTTTTTTTTTCTGTTTTCAGTCTTCAATTCACCATGGCTTACAACCCCTACAACGGATCTTACCCATACCCACCACCAGTTGGATACGTGCCACCACCAATGGGATATGCTCCACCACCAATTGCTCCAGTTCCAGTTGTAGCTCCAATCCCAGTGCCAATCGCTACTCCATACATGGCTCCACCAGTCTATGGACCACCACCAGTCGTTGTGATTGAGGAGCCATACCATCATCACCACTGGAACCCATTTCATCATCACCATCATCATTGCTAATTCTTAAAAATTTTTCTGGCGGTCGGGCGGATTTTTGGACTAAATGACTATGTGATTTTGTAATGTTTTGAAATGAATGAATTTTCACGGTTTCTGTTTTATATTCAATCTGGAAAAAAACAATAAATCGGAAAGACAGTTGGTTCATGTTGATCTGTC</canonical>
            <polymorphic>ACAATCTAATTTCTGTACCAAACTACATATTCCTCTCTTTTTGGGACATTGTTAAACGGAGAGATCTGATTTCTTTCAATCAAACCAAGAATCATATGATATCTTCCCAAAAAAATCAATTGGCCCTGATGTTGACAGGTCAATATTGACTTTTATTGTCCCCTTCTCAGCTTCCATAAAAACTCCCAGTGATTCGAAGTCTGAATTGAGGTCACCTCCCATTCCAACAATTTTATTACACTGGTCTTCATTCGAATATTCTTCGCCGTGTGTGACTCATTGAACCATTTATTTTCGAAACCGATGAATATGCGGCAACAACGAAAACTTTTTTTGGAAAAAGGTGTCGCATTATTTGCCTAGCAAATGACGTGTTTCACAACTTTGCTGATACTGAAATGATATAAAATACCTCGACCTATCAGCCTATTCCATCAGTGCCTCGTCTTGTGACATTTGCCTTTTTTATTCCTTTTCCGTAACTTTCCATATCAGTTTTWGTTACAATCGTTTCATTTCGCATTCTTACTTCAACGTCTCAATTTCTTTCTTCAACCACAACTCATTTTTTTTTTCTGTTTTCAGTCTTCAATTCACCATGGCTTACAACCCCTACAACGGATCTTACCCATACCCACCACCAGTTGGATACGTGCCACCACCAATGGGATATGCTCCACCACCAATTGCTCCAGTTCCAGTTGTAGCTCCAATCCCAGTGCCAATCGCTACTCCATACATGGCTCCACCAGTCTATGGACCACCACCAGTCGTTGTGATTGAGGAGCCATACCATCATCACCACTGGAACCCATTTCATCATCACCATCATCATTGCTAATTCTTAAAAATTTTTCTGGCGGTCGGGCGGATTTTTGGACTAAATGACTATGTGATTTTGTAATGTTTTGAAATGAATGAATTTTCACGGTTTCTGTTTTATATTCAATCTGGAAAAAAACAATAAATCGGAAAGACAGTTGGTTCATGTTGATCTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTTTGCTGATACTGAAATGAT</pcr_primer_p1>
		<pcr_primer_p2>GTATGGGTAAGATCCGTTGTAG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AACTTTGCTGATACTGAAATGATATAAAATACCTCGACCTATCAGCCTATTCCATCAGTGCCTCGTCTTGTGACATTTGCCTTTTTTATTCCTTTTCCGTAACTTTCCATATCAGTTTTTGTTACAATCGTTTCATTTCGCATTCTTACTTCAACGTCTCAATTTCTTTCTTCAACCACAACTCATTTTTTTTTTCTGTTTTCAGTCTTCAATTCACCATGGCTTACAACCCCTACAACGGATCTTACCCATAC</canonical_amplicon>
		<polymorphic_amplicon>AACTTTGCTGATACTGAAATGATATAAAATACCTCGACCTATCAGCCTATTCCATCAGTGCCTCGTCTTGTGACATTTGCCTTTTTTATTCCTTTTCCGTAACTTTCCATATCAGTTTTWGTTACAATCGTTTCATTTCGCATTCTTACTTCAACGTCTCAATTTCTTTCTTCAACCACAACTCATTTTTTTTTTCTGTTTTCAGTCTTCAATTCACCATGGCTTACAACCCCTACAACGGATCTTACCCATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21700</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1015184</contig_pos>
        <strand>+</strand>
        <context>ACACTCCTCT[C/T]CTCGAGGATA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCATAACTTTCCTTTGACATTTTTCAGAGCACTATCCGACACTCCTCT</left_flank>
        <right_flank>CTCGAGGATATGATTTCTCCAGACTCCAAATTTGTTGGAGAAGCACTCGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATTGTAACGACTGTTCTTTAATCATTATTGCACAAAATGATCAGGTAAAGATTTCCCAAAAGAATACAAATGAAAAATAGTTTCTTTCTGGAAAAAGTCTGCAACAGGTCTTTGGTTCTGATCATACCTTTACCAATGCACTTAAAAAGTATAAGCGGTAGAATGGGAATAAAATAATTATCACCGAAGACACCACTCCAGATAAGAACAGTTTTTGTTTCTTCCAACATTTCTTCACACATTGTCAACCCTAAAAGGCGTGACTCACTGTTAAGAGTTTACCCTAAAAATATGTTTAGACATGTTGCAAAATTTTCTCTAAAATAAGAATTCGATACAACGTTAGTCTTGATACATTTCCGCTAGAAGTTTACTTTTCTGTACTTCAGTGTGGTGACCAAAATCAACATTCTAATCCAACAACTAGGGGAACGCTTTTCCCAAGTTTTCCATAACTTTCCTTTGACATTTTTCAGAGCACTATCCGACACTCCTCTTCTCGAGGATATGATTTCTCCAGACTCCAAATTTGTTGGAGAAGCACTCGAGCAGAGAGATGTGCGAACGGTTTTTGTTTCGGCAAAGGAAGGTAGCTTCTTGACTTTTCATAGAACCTTAGCACTAGATCATCATAAATTACAGATAGTAAGGAAAGAGAGAATCGTGTTATTTTGATGATTGGACCATCAAGTTCCCAAAAATCAGATCTCATTGATTTTTTGTGTAACTTTTTTTATGGAGTTGATTCAATGGATCAGAAAAGATTTCATATTGCAAATGAAGTAAGTGTTGTGAAATTTAAAACCAAGTTGCGTAACTTCGAGTCAATTTCTCTTGGTTTCTGTGGAAGGTATCAAAAAGAAATTGACTGAAAAATAATTTTGATATTACAATAAACATTATGCCAGTTTACCGATTTTTGATATCTGTTTGAGGAAATGAGATATGTGCGCTCAAAGTTGACGGTTTGGGAGAAATTCTTTCAGAGATTTAACGCT</canonical>
            <polymorphic>GTATTGTAACGACTGTTCTTTAATCATTATTGCACAAAATGATCAGGTAAAGATTTCCCAAAAGAATACAAATGAAAAATAGTTTCTTTCTGGAAAAAGTCTGCAACAGGTCTTTGGTTCTGATCATACCTTTACCAATGCACTTAAAAAGTATAAGCGGTAGAATGGGAATAAAATAATTATCACCGAAGACACCACTCCAGATAAGAACAGTTTTTGTTTCTTCCAACATTTCTTCACACATTGTCAACCCTAAAAGGCGTGACTCACTGTTAAGAGTTTACCCTAAAAATATGTTTAGACATGTTGCAAAATTTTCTCTAAAATAAGAATTCGATACAACGTTAGTCTTGATACATTTCCGCTAGAAGTTTACTTTTCTGTACTTCAGTGTGGTGACCAAAATCAACATTCTAATCCAACAACTAGGGGAACGCTTTTCCCAAGTTTTCCATAACTTTCCTTTGACATTTTTCAGAGCACTATCCGACACTCCTCTYCTCGAGGATATGATTTCTCCAGACTCCAAATTTGTTGGAGAAGCACTCGAGCAGAGAGATGTGCGAACGGTTTTTGTTTCGGCAAAGGAAGGTAGCTTCTTGACTTTTCATAGAACCTTAGCACTAGATCATCATAAATTACAGATAGTAAGGAAAGAGAGAATCGTGTTATTTTGATGATTGGACCATCAAGTTCCCAAAAATCAGATCTCATTGATTTTTTGTGTAACTTTTTTTATGGAGTTGATTCAATGGATCAGAAAAGATTTCATATTGCAAATGAAGTAAGTGTTGTGAAATTTAAAACCAAGTTGCGTAACTTCGAGTCAATTTCTCTTGGTTTCTGTGGAAGGTATCAAAAAGAAATTGACTGAAAAATAATTTTGATATTACAATAAACATTATGCCAGTTTACCGATTTTTGATATCTGTTTGAGGAAATGAGATATGTGCGCTCAAAGTTGACGGTTTGGGAGAAATTCTTTCAGAGATTTAACGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>401 151 150 110 90 80 18</canonical_bands>
                <polymorphic_bands>401 169 150 110 90 80</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTTTCTGTACTTCAGTGTGGT</pcr_primer_p1>
		<pcr_primer_p2>TGCTAAGGTTCTATGAAAAGTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTTTTCTGTACTTCAGTGTGGTGACCAAAATCAACATTCTAATCCAACAACTAGGGGAACGCTTTTCCCAAGTTTTCCATAACTTTCCTTTGACATTTTTCAGAGCACTATCCGACACTCCTCTTCTCGAGGATATGATTTCTCCAGACTCCAAATTTGTTGGAGAAGCACTCGAGCAGAGAGATGTGCGAACGGTTTTTGTTTCGGCAAAGGAAGGTAGCTTCTTGACTTTTCATAGAACCTTAGCA</canonical_amplicon>
		<polymorphic_amplicon>ACTTTTCTGTACTTCAGTGTGGTGACCAAAATCAACATTCTAATCCAACAACTAGGGGAACGCTTTTCCCAAGTTTTCCATAACTTTCCTTTGACATTTTTCAGAGCACTATCCGACACTCCTCTYCTCGAGGATATGATTTCTCCAGACTCCAAATTTGTTGGAGAAGCACTCGAGCAGAGAGATGTGCGAACGGTTTTTGTTTCGGCAAAGGAAGGTAGCTTCTTGACTTTTCATAGAACCTTAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21701</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1015172</contig_pos>
        <strand>+</strand>
        <context>GAGCACTATC[C/T]GACACTCCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCCCAAGTTTTCCATAACTTTCCTTTGACATTTTTCAGAGCACTATC</left_flank>
        <right_flank>GACACTCCTCTTCTCGAGGATATGATTTCTCCAGACTCCAAATTTGTTGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTAATTGAATTGTATTGTAACGACTGTTCTTTAATCATTATTGCACAAAATGATCAGGTAAAGATTTCCCAAAAGAATACAAATGAAAAATAGTTTCTTTCTGGAAAAAGTCTGCAACAGGTCTTTGGTTCTGATCATACCTTTACCAATGCACTTAAAAAGTATAAGCGGTAGAATGGGAATAAAATAATTATCACCGAAGACACCACTCCAGATAAGAACAGTTTTTGTTTCTTCCAACATTTCTTCACACATTGTCAACCCTAAAAGGCGTGACTCACTGTTAAGAGTTTACCCTAAAAATATGTTTAGACATGTTGCAAAATTTTCTCTAAAATAAGAATTCGATACAACGTTAGTCTTGATACATTTCCGCTAGAAGTTTACTTTTCTGTACTTCAGTGTGGTGACCAAAATCAACATTCTAATCCAACAACTAGGGGAACGCTTTTCCCAAGTTTTCCATAACTTTCCTTTGACATTTTTCAGAGCACTATCCGACACTCCTCTTCTCGAGGATATGATTTCTCCAGACTCCAAATTTGTTGGAGAAGCACTCGAGCAGAGAGATGTGCGAACGGTTTTTGTTTCGGCAAAGGAAGGTAGCTTCTTGACTTTTCATAGAACCTTAGCACTAGATCATCATAAATTACAGATAGTAAGGAAAGAGAGAATCGTGTTATTTTGATGATTGGACCATCAAGTTCCCAAAAATCAGATCTCATTGATTTTTTGTGTAACTTTTTTTATGGAGTTGATTCAATGGATCAGAAAAGATTTCATATTGCAAATGAAGTAAGTGTTGTGAAATTTAAAACCAAGTTGCGTAACTTCGAGTCAATTTCTCTTGGTTTCTGTGGAAGGTATCAAAAAGAAATTGACTGAAAAATAATTTTGATATTACAATAAACATTATGCCAGTTTACCGATTTTTGATATCTGTTTGAGGAAATGAGATATGTGCGCTCAAAGTTGACGGTTTGGGAGAAATTCTTTCAG</canonical>
            <polymorphic>CCTAATTGAATTGTATTGTAACGACTGTTCTTTAATCATTATTGCACAAAATGATCAGGTAAAGATTTCCCAAAAGAATACAAATGAAAAATAGTTTCTTTCTGGAAAAAGTCTGCAACAGGTCTTTGGTTCTGATCATACCTTTACCAATGCACTTAAAAAGTATAAGCGGTAGAATGGGAATAAAATAATTATCACCGAAGACACCACTCCAGATAAGAACAGTTTTTGTTTCTTCCAACATTTCTTCACACATTGTCAACCCTAAAAGGCGTGACTCACTGTTAAGAGTTTACCCTAAAAATATGTTTAGACATGTTGCAAAATTTTCTCTAAAATAAGAATTCGATACAACGTTAGTCTTGATACATTTCCGCTAGAAGTTTACTTTTCTGTACTTCAGTGTGGTGACCAAAATCAACATTCTAATCCAACAACTAGGGGAACGCTTTTCCCAAGTTTTCCATAACTTTCCTTTGACATTTTTCAGAGCACTATCYGACACTCCTCTTCTCGAGGATATGATTTCTCCAGACTCCAAATTTGTTGGAGAAGCACTCGAGCAGAGAGATGTGCGAACGGTTTTTGTTTCGGCAAAGGAAGGTAGCTTCTTGACTTTTCATAGAACCTTAGCACTAGATCATCATAAATTACAGATAGTAAGGAAAGAGAGAATCGTGTTATTTTGATGATTGGACCATCAAGTTCCCAAAAATCAGATCTCATTGATTTTTTGTGTAACTTTTTTTATGGAGTTGATTCAATGGATCAGAAAAGATTTCATATTGCAAATGAAGTAAGTGTTGTGAAATTTAAAACCAAGTTGCGTAACTTCGAGTCAATTTCTCTTGGTTTCTGTGGAAGGTATCAAAAAGAAATTGACTGAAAAATAATTTTGATATTACAATAAACATTATGCCAGTTTACCGATTTTTGATATCTGTTTGAGGAAATGAGATATGTGCGCTCAAAGTTGACGGTTTGGGAGAAATTCTTTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTTCTGTACTTCAGTGTGGT</pcr_primer_p1>
		<pcr_primer_p2>TGCTAAGGTTCTATGAAAAGTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTTTTCTGTACTTCAGTGTGGTGACCAAAATCAACATTCTAATCCAACAACTAGGGGAACGCTTTTCCCAAGTTTTCCATAACTTTCCTTTGACATTTTTCAGAGCACTATCCGACACTCCTCTTCTCGAGGATATGATTTCTCCAGACTCCAAATTTGTTGGAGAAGCACTCGAGCAGAGAGATGTGCGAACGGTTTTTGTTTCGGCAAAGGAAGGTAGCTTCTTGACTTTTCATAGAACCTTAGCA</canonical_amplicon>
		<polymorphic_amplicon>ACTTTTCTGTACTTCAGTGTGGTGACCAAAATCAACATTCTAATCCAACAACTAGGGGAACGCTTTTCCCAAGTTTTCCATAACTTTCCTTTGACATTTTTCAGAGCACTATCYGACACTCCTCTTCTCGAGGATATGATTTCTCCAGACTCCAAATTTGTTGGAGAAGCACTCGAGCAGAGAGATGTGCGAACGGTTTTTGTTTCGGCAAAGGAAGGTAGCTTCTTGACTTTTCATAGAACCTTAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21702</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1014981</contig_pos>
        <strand>+</strand>
        <context>TAAAAATATG[C/T]TTAGACATGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAACCCTAAAAGGCGTGACTCACTGTTAAGAGTTTACCCTAAAAATATG</left_flank>
        <right_flank>TTAGACATGTTGCAAAATTTTCTCTAAAATAAGAATTCGATACAACGTTA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGTTATATATGAATCGTATATCAGAGGACAAGGGTTGACAAGTGAAAAAACGGGTTTCCATACTACCAACTAGCGATATACGTTCTCTCTCAACACTATTATCACTCATCATCATGTATCATTTTTCTCACTTCAACATCAAGACCTCCCTAGCCGATTTATGACTTCCCCTCGCTGATTTACAACCTACCTAATTGAATTGTATTGTAACGACTGTTCTTTAATCATTATTGCACAAAATGATCAGGTAAAGATTTCCCAAAAGAATACAAATGAAAAATAGTTTCTTTCTGGAAAAAGTCTGCAACAGGTCTTTGGTTCTGATCATACCTTTACCAATGCACTTAAAAAGTATAAGCGGTAGAATGGGAATAAAATAATTATCACCGAAGACACCACTCCAGATAAGAACAGTTTTTGTTTCTTCCAACATTTCTTCACACATTGTCAACCCTAAAAGGCGTGACTCACTGTTAAGAGTTTACCCTAAAAATATGTTTAGACATGTTGCAAAATTTTCTCTAAAATAAGAATTCGATACAACGTTAGTCTTGATACATTTCCGCTAGAAGTTTACTTTTCTGTACTTCAGTGTGGTGACCAAAATCAACATTCTAATCCAACAACTAGGGGAACGCTTTTCCCAAGTTTTCCATAACTTTCCTTTGACATTTTTCAGAGCACTATCCGACACTCCTCTTCTCGAGGATATGATTTCTCCAGACTCCAAATTTGTTGGAGAAGCACTCGAGCAGAGAGATGTGCGAACGGTTTTTGTTTCGGCAAAGGAAGGTAGCTTCTTGACTTTTCATAGAACCTTAGCACTAGATCATCATAAATTACAGATAGTAAGGAAAGAGAGAATCGTGTTATTTTGATGATTGGACCATCAAGTTCCCAAAAATCAGATCTCATTGATTTTTTGTGTAACTTTTTTTATGGAGTTGATTCAATGGATCAGAAAAGATTTCATATTGCAAATGAAGTAAGTGTTGTGA</canonical>
            <polymorphic>AATGTTATATATGAATCGTATATCAGAGGACAAGGGTTGACAAGTGAAAAAACGGGTTTCCATACTACCAACTAGCGATATACGTTCTCTCTCAACACTATTATCACTCATCATCATGTATCATTTTTCTCACTTCAACATCAAGACCTCCCTAGCCGATTTATGACTTCCCCTCGCTGATTTACAACCTACCTAATTGAATTGTATTGTAACGACTGTTCTTTAATCATTATTGCACAAAATGATCAGGTAAAGATTTCCCAAAAGAATACAAATGAAAAATAGTTTCTTTCTGGAAAAAGTCTGCAACAGGTCTTTGGTTCTGATCATACCTTTACCAATGCACTTAAAAAGTATAAGCGGTAGAATGGGAATAAAATAATTATCACCGAAGACACCACTCCAGATAAGAACAGTTTTTGTTTCTTCCAACATTTCTTCACACATTGTCAACCCTAAAAGGCGTGACTCACTGTTAAGAGTTTACCCTAAAAATATGYTTAGACATGTTGCAAAATTTTCTCTAAAATAAGAATTCGATACAACGTTAGTCTTGATACATTTCCGCTAGAAGTTTACTTTTCTGTACTTCAGTGTGGTGACCAAAATCAACATTCTAATCCAACAACTAGGGGAACGCTTTTCCCAAGTTTTCCATAACTTTCCTTTGACATTTTTCAGAGCACTATCCGACACTCCTCTTCTCGAGGATATGATTTCTCCAGACTCCAAATTTGTTGGAGAAGCACTCGAGCAGAGAGATGTGCGAACGGTTTTTGTTTCGGCAAAGGAAGGTAGCTTCTTGACTTTTCATAGAACCTTAGCACTAGATCATCATAAATTACAGATAGTAAGGAAAGAGAGAATCGTGTTATTTTGATGATTGGACCATCAAGTTCCCAAAAATCAGATCTCATTGATTTTTTGTGTAACTTTTTTTATGGAGTTGATTCAATGGATCAGAAAAGATTTCATATTGCAAATGAAGTAAGTGTTGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACCTTTACCAATGCACTTAAA</pcr_primer_p1>
		<pcr_primer_p2>TAAACTTCTAGCGGAAATGTATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATACCTTTACCAATGCACTTAAAAAGTATAAGCGGTAGAATGGGAATAAAATAATTATCACCGAAGACACCACTCCAGATAAGAACAGTTTTTGTTTCTTCCAACATTTCTTCACACATTGTCAACCCTAAAAGGCGTGACTCACTGTTAAGAGTTTACCCTAAAAATATGTTTAGACATGTTGCAAAATTTTCTCTAAAATAAGAATTCGATACAACGTTAGTCTTGATACATTTCCGCTAGAAGTTTA</canonical_amplicon>
		<polymorphic_amplicon>ATACCTTTACCAATGCACTTAAAAAGTATAAGCGGTAGAATGGGAATAAAATAATTATCACCGAAGACACCACTCCAGATAAGAACAGTTTTTGTTTCTTCCAACATTTCTTCACACATTGTCAACCCTAAAAGGCGTGACTCACTGTTAAGAGTTTACCCTAAAAATATGYTTAGACATGTTGCAAAATTTTCTCTAAAATAAGAATTCGATACAACGTTAGTCTTGATACATTTCCGCTAGAAGTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21703</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1018076</contig_pos>
        <strand>+</strand>
        <context>TAATTTTTTT[C/T]CAGTGCTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGATGATTTATTGTGAATTTCTGACTATTTTCTTTTCAATAATTTTTTT</left_flank>
        <right_flank>CAGTGCTCAATACGATTACGCAACATATGGAAGCGAACGGGCCTACTCCA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCTCGAGAGTTGATTTTATCAAATTTATCAGCAAGCTGAAAGCAAGAGAGTCATTTTAAGGATCATCGAATCAAATATTTGAACTTTTTCAAATGTATCCATAGTAGTTTTCTCATGTTCAAAGTCATTGTGTTTTGATAACTGTGCCATAATCGAATTATCAAAACCTTATCAAGTTTGAATACTAAAAACCACGCTCAATTCATTTTCAAAAACAGACTATTAGTAAATAATTACATTCAAATTTTCAAGATAAATGCGTTTCTACATTTTACAGTACCGGCCAAATAGGTAATTAAGCTATAGTTTTCTCAAATTTCAAAACCATCATAAACTCCTTATTTCTTGATTTTCGAAACAGCTTTTAACAGAAAGTTCGACTAGTTTTAGTAAAAATTGTTTTCTAAGAAAACAATTTCGCAAAACGTTTGGATAAATTAATGAACTGGATGATTTATTGTGAATTTCTGACTATTTTCTTTTCAATAATTTTTTTTCAGTGCTCAATACGATTACGCAACATATGGAAGCGAACGGGCCTACTCCAGCCAAGTGGCATATGATGTACCTCCATCCGAACACTCTCAAGCTGCCAACCTTGGTAATCGCCGGCATAGTGTCCCAGGTAATTTATTATTTTGCTATTTTTAATCTAAATTCCCTGTTTTTACCTTCCAAAGACAACTTTCTTGCCGAAAGTGAAAAATGTGAATCATCTGAAGCGAAATTTTGCTGGTATTTTCTGTATGTATGTATGTGTGCGCAACACACGAATCACTGATTCATCCATGAAAGGGCAACACAAACTAGTGTTTGCTATTCTTCTCCGGCTTTCTTCCCTCAAAATTTTACGATAGTGAAGTCGCTTGGTACTGGATGAAAGTTGGAATCAAAACATATTTGGGACCAAGAGCAACAAAAGCAAAAAATAAATTTTCATTCAAATTCTACCATCCAATTTTACCACATTCAATCAATTTAACAACCTTTACGGTAG</canonical>
            <polymorphic>AATTCTCGAGAGTTGATTTTATCAAATTTATCAGCAAGCTGAAAGCAAGAGAGTCATTTTAAGGATCATCGAATCAAATATTTGAACTTTTTCAAATGTATCCATAGTAGTTTTCTCATGTTCAAAGTCATTGTGTTTTGATAACTGTGCCATAATCGAATTATCAAAACCTTATCAAGTTTGAATACTAAAAACCACGCTCAATTCATTTTCAAAAACAGACTATTAGTAAATAATTACATTCAAATTTTCAAGATAAATGCGTTTCTACATTTTACAGTACCGGCCAAATAGGTAATTAAGCTATAGTTTTCTCAAATTTCAAAACCATCATAAACTCCTTATTTCTTGATTTTCGAAACAGCTTTTAACAGAAAGTTCGACTAGTTTTAGTAAAAATTGTTTTCTAAGAAAACAATTTCGCAAAACGTTTGGATAAATTAATGAACTGGATGATTTATTGTGAATTTCTGACTATTTTCTTTTCAATAATTTTTTTYCAGTGCTCAATACGATTACGCAACATATGGAAGCGAACGGGCCTACTCCAGCCAAGTGGCATATGATGTACCTCCATCCGAACACTCTCAAGCTGCCAACCTTGGTAATCGCCGGCATAGTGTCCCAGGTAATTTATTATTTTGCTATTTTTAATCTAAATTCCCTGTTTTTACCTTCCAAAGACAACTTTCTTGCCGAAAGTGAAAAATGTGAATCATCTGAAGCGAAATTTTGCTGGTATTTTCTGTATGTATGTATGTGTGCGCAACACACGAATCACTGATTCATCCATGAAAGGGCAACACAAACTAGTGTTTGCTATTCTTCTCCGGCTTTCTTCCCTCAAAATTTTACGATAGTGAAGTCGCTTGGTACTGGATGAAAGTTGGAATCAAAACATATTTGGGACCAAGAGCAACAAAAGCAAAAAATAAATTTTCATTCAAATTCTACCATCCAATTTTACCACATTCAATCAATTTAACAACCTTTACGGTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTTGGATAAATTAATGAACTG</pcr_primer_p1>
		<pcr_primer_p2>GAAGGTAAAAACAGGGAATTTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTTTGGATAAATTAATGAACTGGATGATTTATTGTGAATTTCTGACTATTTTCTTTTCAATAATTTTTTTTCAGTGCTCAATACGATTACGCAACATATGGAAGCGAACGGGCCTACTCCAGCCAAGTGGCATATGATGTACCTCCATCCGAACACTCTCAAGCTGCCAACCTTGGTAATCGCCGGCATAGTGTCCCAGGTAATTTATTATTTTGCTATTTTTAATCTAAATTCCCTGTTTTTACCTTC</canonical_amplicon>
		<polymorphic_amplicon>CGTTTGGATAAATTAATGAACTGGATGATTTATTGTGAATTTCTGACTATTTTCTTTTCAATAATTTTTTTYCAGTGCTCAATACGATTACGCAACATATGGAAGCGAACGGGCCTACTCCAGCCAAGTGGCATATGATGTACCTCCATCCGAACACTCTCAAGCTGCCAACCTTGGTAATCGCCGGCATAGTGTCCCAGGTAATTTATTATTTTGCTATTTTTAATCTAAATTCCCTGTTTTTACCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21704</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1018101</contig_pos>
        <strand>+</strand>
        <context>ATTACGCAAC[A/C]TATGGAAGCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTATTTTCTTTTCAATAATTTTTTTTCAGTGCTCAATACGATTACGCAAC</left_flank>
        <right_flank>TATGGAAGCGAACGGGCCTACTCCAGCCAAGTGGCATATGATGTACCTCC</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTATCAGCAAGCTGAAAGCAAGAGAGTCATTTTAAGGATCATCGAATCAAATATTTGAACTTTTTCAAATGTATCCATAGTAGTTTTCTCATGTTCAAAGTCATTGTGTTTTGATAACTGTGCCATAATCGAATTATCAAAACCTTATCAAGTTTGAATACTAAAAACCACGCTCAATTCATTTTCAAAAACAGACTATTAGTAAATAATTACATTCAAATTTTCAAGATAAATGCGTTTCTACATTTTACAGTACCGGCCAAATAGGTAATTAAGCTATAGTTTTCTCAAATTTCAAAACCATCATAAACTCCTTATTTCTTGATTTTCGAAACAGCTTTTAACAGAAAGTTCGACTAGTTTTAGTAAAAATTGTTTTCTAAGAAAACAATTTCGCAAAACGTTTGGATAAATTAATGAACTGGATGATTTATTGTGAATTTCTGACTATTTTCTTTTCAATAATTTTTTTTCAGTGCTCAATACGATTACGCAACATATGGAAGCGAACGGGCCTACTCCAGCCAAGTGGCATATGATGTACCTCCATCCGAACACTCTCAAGCTGCCAACCTTGGTAATCGCCGGCATAGTGTCCCAGGTAATTTATTATTTTGCTATTTTTAATCTAAATTCCCTGTTTTTACCTTCCAAAGACAACTTTCTTGCCGAAAGTGAAAAATGTGAATCATCTGAAGCGAAATTTTGCTGGTATTTTCTGTATGTATGTATGTGTGCGCAACACACGAATCACTGATTCATCCATGAAAGGGCAACACAAACTAGTGTTTGCTATTCTTCTCCGGCTTTCTTCCCTCAAAATTTTACGATAGTGAAGTCGCTTGGTACTGGATGAAAGTTGGAATCAAAACATATTTGGGACCAAGAGCAACAAAAGCAAAAAATAAATTTTCATTCAAATTCTACCATCCAATTTTACCACATTCAATCAATTTAACAACCTTTACGGTAGTATTCTTAAAATAGGTACGAGTGCA</canonical>
            <polymorphic>ATTTATCAGCAAGCTGAAAGCAAGAGAGTCATTTTAAGGATCATCGAATCAAATATTTGAACTTTTTCAAATGTATCCATAGTAGTTTTCTCATGTTCAAAGTCATTGTGTTTTGATAACTGTGCCATAATCGAATTATCAAAACCTTATCAAGTTTGAATACTAAAAACCACGCTCAATTCATTTTCAAAAACAGACTATTAGTAAATAATTACATTCAAATTTTCAAGATAAATGCGTTTCTACATTTTACAGTACCGGCCAAATAGGTAATTAAGCTATAGTTTTCTCAAATTTCAAAACCATCATAAACTCCTTATTTCTTGATTTTCGAAACAGCTTTTAACAGAAAGTTCGACTAGTTTTAGTAAAAATTGTTTTCTAAGAAAACAATTTCGCAAAACGTTTGGATAAATTAATGAACTGGATGATTTATTGTGAATTTCTGACTATTTTCTTTTCAATAATTTTTTTTCAGTGCTCAATACGATTACGCAACMTATGGAAGCGAACGGGCCTACTCCAGCCAAGTGGCATATGATGTACCTCCATCCGAACACTCTCAAGCTGCCAACCTTGGTAATCGCCGGCATAGTGTCCCAGGTAATTTATTATTTTGCTATTTTTAATCTAAATTCCCTGTTTTTACCTTCCAAAGACAACTTTCTTGCCGAAAGTGAAAAATGTGAATCATCTGAAGCGAAATTTTGCTGGTATTTTCTGTATGTATGTATGTGTGCGCAACACACGAATCACTGATTCATCCATGAAAGGGCAACACAAACTAGTGTTTGCTATTCTTCTCCGGCTTTCTTCCCTCAAAATTTTACGATAGTGAAGTCGCTTGGTACTGGATGAAAGTTGGAATCAAAACATATTTGGGACCAAGAGCAACAAAAGCAAAAAATAAATTTTCATTCAAATTCTACCATCCAATTTTACCACATTCAATCAATTTAACAACCTTTACGGTAGTATTCTTAAAATAGGTACGAGTGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATATG</site>
                <isoschizomers>
                    <enzyme>FauNDI</enzyme>
                    <enzyme>NdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 464 36</canonical_bands>
                <polymorphic_bands>536 464</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTTTGGATAAATTAATGAACTG</pcr_primer_p1>
		<pcr_primer_p2>GAAGGTAAAAACAGGGAATTTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTTTGGATAAATTAATGAACTGGATGATTTATTGTGAATTTCTGACTATTTTCTTTTCAATAATTTTTTTTCAGTGCTCAATACGATTACGCAACATATGGAAGCGAACGGGCCTACTCCAGCCAAGTGGCATATGATGTACCTCCATCCGAACACTCTCAAGCTGCCAACCTTGGTAATCGCCGGCATAGTGTCCCAGGTAATTTATTATTTTGCTATTTTTAATCTAAATTCCCTGTTTTTACCTTC</canonical_amplicon>
		<polymorphic_amplicon>CGTTTGGATAAATTAATGAACTGGATGATTTATTGTGAATTTCTGACTATTTTCTTTTCAATAATTTTTTTTCAGTGCTCAATACGATTACGCAACMTATGGAAGCGAACGGGCCTACTCCAGCCAAGTGGCATATGATGTACCTCCATCCGAACACTCTCAAGCTGCCAACCTTGGTAATCGCCGGCATAGTGTCCCAGGTAATTTATTATTTTGCTATTTTTAATCTAAATTCCCTGTTTTTACCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21705</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1018230</contig_pos>
        <strand>+</strand>
        <context>GCTATTTTTA[A/G]TCTAAATTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTAATCGCCGGCATAGTGTCCCAGGTAATTTATTATTTTGCTATTTTTA</left_flank>
        <right_flank>TCTAAATTCCCTGTTTTTACCTTCCAAAGACAACTTTCTTGCCGAAAGTG</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGAATTATCAAAACCTTATCAAGTTTGAATACTAAAAACCACGCTCAATTCATTTTCAAAAACAGACTATTAGTAAATAATTACATTCAAATTTTCAAGATAAATGCGTTTCTACATTTTACAGTACCGGCCAAATAGGTAATTAAGCTATAGTTTTCTCAAATTTCAAAACCATCATAAACTCCTTATTTCTTGATTTTCGAAACAGCTTTTAACAGAAAGTTCGACTAGTTTTAGTAAAAATTGTTTTCTAAGAAAACAATTTCGCAAAACGTTTGGATAAATTAATGAACTGGATGATTTATTGTGAATTTCTGACTATTTTCTTTTCAATAATTTTTTTTCAGTGCTCAATACGATTACGCAACATATGGAAGCGAACGGGCCTACTCCAGCCAAGTGGCATATGATGTACCTCCATCCGAACACTCTCAAGCTGCCAACCTTGGTAATCGCCGGCATAGTGTCCCAGGTAATTTATTATTTTGCTATTTTTAATCTAAATTCCCTGTTTTTACCTTCCAAAGACAACTTTCTTGCCGAAAGTGAAAAATGTGAATCATCTGAAGCGAAATTTTGCTGGTATTTTCTGTATGTATGTATGTGTGCGCAACACACGAATCACTGATTCATCCATGAAAGGGCAACACAAACTAGTGTTTGCTATTCTTCTCCGGCTTTCTTCCCTCAAAATTTTACGATAGTGAAGTCGCTTGGTACTGGATGAAAGTTGGAATCAAAACATATTTGGGACCAAGAGCAACAAAAGCAAAAAATAAATTTTCATTCAAATTCTACCATCCAATTTTACCACATTCAATCAATTTAACAACCTTTACGGTAGTATTCTTAAAATAGGTACGAGTGCAGAAGTGTGGGATGGAGGACGAGTTTTAACGATAAACTATCTGAAAGAGCATAGAAGAAAGAGAGGAGTAAAGACATAGGGAGGGTGTGCGTTATCAGTATTATCAACTTCATCAAATATTCATCATGTA</canonical>
            <polymorphic>ATCGAATTATCAAAACCTTATCAAGTTTGAATACTAAAAACCACGCTCAATTCATTTTCAAAAACAGACTATTAGTAAATAATTACATTCAAATTTTCAAGATAAATGCGTTTCTACATTTTACAGTACCGGCCAAATAGGTAATTAAGCTATAGTTTTCTCAAATTTCAAAACCATCATAAACTCCTTATTTCTTGATTTTCGAAACAGCTTTTAACAGAAAGTTCGACTAGTTTTAGTAAAAATTGTTTTCTAAGAAAACAATTTCGCAAAACGTTTGGATAAATTAATGAACTGGATGATTTATTGTGAATTTCTGACTATTTTCTTTTCAATAATTTTTTTTCAGTGCTCAATACGATTACGCAACATATGGAAGCGAACGGGCCTACTCCAGCCAAGTGGCATATGATGTACCTCCATCCGAACACTCTCAAGCTGCCAACCTTGGTAATCGCCGGCATAGTGTCCCAGGTAATTTATTATTTTGCTATTTTTARTCTAAATTCCCTGTTTTTACCTTCCAAAGACAACTTTCTTGCCGAAAGTGAAAAATGTGAATCATCTGAAGCGAAATTTTGCTGGTATTTTCTGTATGTATGTATGTGTGCGCAACACACGAATCACTGATTCATCCATGAAAGGGCAACACAAACTAGTGTTTGCTATTCTTCTCCGGCTTTCTTCCCTCAAAATTTTACGATAGTGAAGTCGCTTGGTACTGGATGAAAGTTGGAATCAAAACATATTTGGGACCAAGAGCAACAAAAGCAAAAAATAAATTTTCATTCAAATTCTACCATCCAATTTTACCACATTCAATCAATTTAACAACCTTTACGGTAGTATTCTTAAAATAGGTACGAGTGCAGAAGTGTGGGATGGAGGACGAGTTTTAACGATAAACTATCTGAAAGAGCATAGAAGAAAGAGAGGAGTAAAGACATAGGGAGGGTGTGCGTTATCAGTATTATCAACTTCATCAAATATTCATCATGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>331 210 145 104 73 69 44 24</canonical_bands>
                <polymorphic_bands>541 145 104 73 69 44 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTTCTGACTATTTTCTTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>GATGATTCACATTTTTCACTTTC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>GAATTTCTGACTATTTTCTTTTCAATAATTTTTTTTCAGTGCTCAATACGATTACGCAACATATGGAAGCGAACGGGCCTACTCCAGCCAAGTGGCATATGATGTACCTCCATCCGAACACTCTCAAGCTGCCAACCTTGGTAATCGCCGGCATAGTGTCCCAGGTAATTTATTATTTTGCTATTTTTAATCTAAATTCCCTGTTTTTACCTTCCAAAGACAACTTTCTTGCCGAAAGTGAAAAATGTGAATCATC</canonical_amplicon>
		<polymorphic_amplicon>GAATTTCTGACTATTTTCTTTTCAATAATTTTTTTTCAGTGCTCAATACGATTACGCAACATATGGAAGCGAACGGGCCTACTCCAGCCAAGTGGCATATGATGTACCTCCATCCGAACACTCTCAAGCTGCCAACCTTGGTAATCGCCGGCATAGTGTCCCAGGTAATTTATTATTTTGCTATTTTTARTCTAAATTCCCTGTTTTTACCTTCCAAAGACAACTTTCTTGCCGAAAGTGAAAAATGTGAATCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21706</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1018311</contig_pos>
        <strand>+</strand>
        <context>GCGAAATTTT[C/G]CTGGTATTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAACTTTCTTGCCGAAAGTGAAAAATGTGAATCATCTGAAGCGAAATTTT</left_flank>
        <right_flank>CTGGTATTTTCTGTATGTATGTATGTGTGCGCAACACACGAATCACTGAT</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTACATTCAAATTTTCAAGATAAATGCGTTTCTACATTTTACAGTACCGGCCAAATAGGTAATTAAGCTATAGTTTTCTCAAATTTCAAAACCATCATAAACTCCTTATTTCTTGATTTTCGAAACAGCTTTTAACAGAAAGTTCGACTAGTTTTAGTAAAAATTGTTTTCTAAGAAAACAATTTCGCAAAACGTTTGGATAAATTAATGAACTGGATGATTTATTGTGAATTTCTGACTATTTTCTTTTCAATAATTTTTTTTCAGTGCTCAATACGATTACGCAACATATGGAAGCGAACGGGCCTACTCCAGCCAAGTGGCATATGATGTACCTCCATCCGAACACTCTCAAGCTGCCAACCTTGGTAATCGCCGGCATAGTGTCCCAGGTAATTTATTATTTTGCTATTTTTAATCTAAATTCCCTGTTTTTACCTTCCAAAGACAACTTTCTTGCCGAAAGTGAAAAATGTGAATCATCTGAAGCGAAATTTTGCTGGTATTTTCTGTATGTATGTATGTGTGCGCAACACACGAATCACTGATTCATCCATGAAAGGGCAACACAAACTAGTGTTTGCTATTCTTCTCCGGCTTTCTTCCCTCAAAATTTTACGATAGTGAAGTCGCTTGGTACTGGATGAAAGTTGGAATCAAAACATATTTGGGACCAAGAGCAACAAAAGCAAAAAATAAATTTTCATTCAAATTCTACCATCCAATTTTACCACATTCAATCAATTTAACAACCTTTACGGTAGTATTCTTAAAATAGGTACGAGTGCAGAAGTGTGGGATGGAGGACGAGTTTTAACGATAAACTATCTGAAAGAGCATAGAAGAAAGAGAGGAGTAAAGACATAGGGAGGGTGTGCGTTATCAGTATTATCAACTTCATCAAATATTCATCATGTACACTTGGTCTTGAAGTTTTCAATACAGAATCGTTTATGTTTTCAAGATGTTTTCTAGAAAAGCTTTTGTTTTTGTTTTTGT</canonical>
            <polymorphic>ATTACATTCAAATTTTCAAGATAAATGCGTTTCTACATTTTACAGTACCGGCCAAATAGGTAATTAAGCTATAGTTTTCTCAAATTTCAAAACCATCATAAACTCCTTATTTCTTGATTTTCGAAACAGCTTTTAACAGAAAGTTCGACTAGTTTTAGTAAAAATTGTTTTCTAAGAAAACAATTTCGCAAAACGTTTGGATAAATTAATGAACTGGATGATTTATTGTGAATTTCTGACTATTTTCTTTTCAATAATTTTTTTTCAGTGCTCAATACGATTACGCAACATATGGAAGCGAACGGGCCTACTCCAGCCAAGTGGCATATGATGTACCTCCATCCGAACACTCTCAAGCTGCCAACCTTGGTAATCGCCGGCATAGTGTCCCAGGTAATTTATTATTTTGCTATTTTTAATCTAAATTCCCTGTTTTTACCTTCCAAAGACAACTTTCTTGCCGAAAGTGAAAAATGTGAATCATCTGAAGCGAAATTTTSCTGGTATTTTCTGTATGTATGTATGTGTGCGCAACACACGAATCACTGATTCATCCATGAAAGGGCAACACAAACTAGTGTTTGCTATTCTTCTCCGGCTTTCTTCCCTCAAAATTTTACGATAGTGAAGTCGCTTGGTACTGGATGAAAGTTGGAATCAAAACATATTTGGGACCAAGAGCAACAAAAGCAAAAAATAAATTTTCATTCAAATTCTACCATCCAATTTTACCACATTCAATCAATTTAACAACCTTTACGGTAGTATTCTTAAAATAGGTACGAGTGCAGAAGTGTGGGATGGAGGACGAGTTTTAACGATAAACTATCTGAAAGAGCATAGAAGAAAGAGAGGAGTAAAGACATAGGGAGGGTGTGCGTTATCAGTATTATCAACTTCATCAAATATTCATCATGTACACTTGGTCTTGAAGTTTTCAATACAGAATCGTTTATGTTTTCAAGATGTTTTCTAGAAAAGCTTTTGTTTTTGTTTTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAAATTCCCTGTTTTTACCTT</pcr_primer_p1>
		<pcr_primer_p2>ATATGTTTTGATTCCAACTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTAAATTCCCTGTTTTTACCTTCCAAAGACAACTTTCTTGCCGAAAGTGAAAAATGTGAATCATCTGAAGCGAAATTTTGCTGGTATTTTCTGTATGTATGTATGTGTGCGCAACACACGAATCACTGATTCATCCATGAAAGGGCAACACAAACTAGTGTTTGCTATTCTTCTCCGGCTTTCTTCCCTCAAAATTTTACGATAGTGAAGTCGCTTGGTACTGGATGAAAGTTGGAATCAAAACATAT</canonical_amplicon>
		<polymorphic_amplicon>TCTAAATTCCCTGTTTTTACCTTCCAAAGACAACTTTCTTGCCGAAAGTGAAAAATGTGAATCATCTGAAGCGAAATTTTSCTGGTATTTTCTGTATGTATGTATGTGTGCGCAACACACGAATCACTGATTCATCCATGAAAGGGCAACACAAACTAGTGTTTGCTATTCTTCTCCGGCTTTCTTCCCTCAAAATTTTACGATAGTGAAGTCGCTTGGTACTGGATGAAAGTTGGAATCAAAACATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21707</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1019434</contig_pos>
        <strand>+</strand>
        <context>TTTCCATATT[C/T]CCTCCYTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAACTAATCAAAGCTCGACGTTTTCGAACACCCCCATATTTTCCATATT</left_flank>
        <right_flank>CCTCCCTTTTTCAAAAACGTATGACTAACGCTTTTCCTTTCATTTGAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGAAGGGCCGGTCCTTCTAATACGGGTTTCAAGGTACCTAAGTGAGATAAGTGAACTAAAGCTTTTGCTTTTTGAGACACATGAATAAGCCAATTAGTTAGTAAATTGATTAATTTCAATTGACAGTTCGAACAATAAATGGATCAAGAACTATTCGGAAATTTGGTTTTGATCAATCCCAGAAACAATATCACGAGAAAACCAATTTTGAAGATTTATGCATTTTTTTAGTTGTCAAAAAATTTTAATTTTTGGAAGCTTTTAAAACTAGCAGCCGATGTTTTTAGAATTTATGTATTTATGTTTTTAGAATGATTTTATTAGAACCCATCGGCATCGTTTTCATTTGAATTATCGTTTTTGAAATATTCTCAATCCCATTAGGTGGTAAAACTAGCCGTTTCCTATCGATGGGAACTTTTATGGAGAGTTGAATACCAAAACAAATAAACTAATCAAAGCTCGACGTTTTCGAACACCCCCATATTTTCCATATTTCCTCCCTTTTTCAAAAACGTATGACTAACGCTTTTCCTTTCATTTGAATACCATGCGTAGAATATTTTTCAATTTCCGTTTTTTTTACAGACGATATTCGTCATTACGCCGACGAGACAACTCCACCGCCTGTTTTGCACGACGTCGCCGATCGGTAAAGCAAATTTTCGAAAATTATTATTTCCGATTTTATTTCCAGATACTCCACAGTGGCTTATATGAACCACGAGCCAAACCAATACAACACCAGAATCTACTCCCGGTCGCCTACTCGTAGTCAAGTCGGAGTCCGCGACGCTCATCGTTTAAGTCGAGACGATTTGCGAATCGTCGATGCACACAGTAGTCCCAGTGACTCACAATCGGAAGAATTGAGAAGAATGTACTCAGGAAGAAGTGGGAATTCAGTCAAACCAACCGGCGATATAACGTGAGTGCGCTGATAACAACATATGCTCAAAACTCCTTATTTTCTTCCAGCGCGCGTTACGTTTACGACA</canonical>
            <polymorphic>ATAGAAGGGCCGGTCCTTCTAATACGGGTTTCAAGGTACCTAAGTGAGATAAGTGAACTAAAGCTTTTGCTTTTTGAGACACATGAATAAGCCAATTAGTTAGTAAATTGATTAATTTCAATTGACAGTTCGAACAATAAATGGATCAAGAACTATTCGGAAATTTGGTTTTGATCAATCCCAGAAACAATATCACGAGAAAACCAATTTTGAAGATTTATGCATTTTTTTAGTTGTCAAAAAATTTTAATTTTTGGAAGCTTTTAAAACTAGCAGCCGATGTTTTTAGAATTTATGTATTTATGTTTTTAGAATGATTTTATTAGAACCCATCGGCATCGTTTTCATTTGAATTATCGTTTTTGAAATATTCTCAATCCCATTAGGTGGTAAAACTAGCCGTTTCCTATCGATGGGAACTTTTATGGAGAGTTGAATACCAAAACAAATAAACTAATCAAAGCTCGACGTTTTCGAACACCCCCATATTTTCCATATTYCCTCCCTTTTTCAAAAACGTATGACTAACGCTTTTCCTTTCATTTGAATACCATGCGTAGAATATTTTTCAATTTCCGTTTTTTTTACAGACGATATTCGTCATTACGCCGACGAGACAACTCCACCGCCTGTTTTGCACGACGTCGCCGATCGGTAAAGCAAATTTTCGAAAATTATTATTTCCGATTTTATTTCCAGATACTCCACAGTGGCTTATATGAACCACGAGCCAAACCAATACAACACCAGAATCTACTCCCGGTCGCCTACTCGTAGTCAAGTCGGAGTCCGCGACGCTCATCGTTTAAGTCGAGACGATTTGCGAATCGTCGATGCACACAGTAGTCCCAGTGACTCACAATCGGAAGAATTGAGAAGAATGTACTCAGGAAGAAGTGGGAATTCAGTCAAACCAACCGGCGATATAACGTGAGTGCGCTGATAACAACATATGCTCAAAACTCCTTATTTTCTTCCAGCGCGCGTTACGTTTACGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAATATTCTCAATCCCATTAG</pcr_primer_p1>
		<pcr_primer_p2>AATGACGAATATCGTCTGTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TGAAATATTCTCAATCCCATTAGGTGGTAAAACTAGCCGTTTCCTATCGATGGGAACTTTTATGGAGAGTTGAATACCAAAACAAATAAACTAATCAAAGCTCGACGTTTTCGAACACCCCCATATTTTCCATATTTCCTCCCTTTTTCAAAAACGTATGACTAACGCTTTTCCTTTCATTTGAATACCATGCGTAGAATATTTTTCAATTTCCGTTTTTTTTACAGACGATATTCGTCATT</canonical_amplicon>
		<polymorphic_amplicon>TGAAATATTCTCAATCCCATTAGGTGGTAAAACTAGCCGTTTCCTATCGATGGGAACTTTTATGGAGAGTTGAATACCAAAACAAATAAACTAATCAAAGCTCGACGTTTTCGAACACCCCCATATTTTCCATATTYCCTCCCTTTTTCAAAAACGTATGACTAACGCTTTTCCTTTCATTTGAATACCATGCGTAGAATATTTTTCAATTTCCGTTTTTTTTACAGACGATATTCGTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21708</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1022859</contig_pos>
        <strand>+</strand>
        <context>TCCATCTATT[A/G]GCTGTGTAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATCAGGGATTTGTCTATAGAATTTAGGCTAATATATTTTCCATCTATT</left_flank>
        <right_flank>GCTGTGTAGTCATATACTTTTTGGCGTGTCTCTTTTTTCTGAAAAAAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGATTTCTTTGTTCCCACATTCATTATTCATTCATGAATTTATATTTTTTCAAATAAAATGTATCTAGCCGAAAAATATTTTTCTCGATTTTTTCCTCAATTTTGATTAACGTGCTATTGTTTTGTTCAGATGAGTGCCCAGCTACAGGAATTAAAAAATAGTTAGAAGTTGTACAAAATGTAATTTTTTGTTGGAATGTTTAATTTACAATCAAAAGCGAATTTTTCGGTTCGTTAAATTTTCTTTTTTTATCTACAAAGCCCAAATTATCGTGATAAACTTTTCAGTCAAGTTTCAAAGAGTCATACCGAAGGATATAATTCTGATATCTTGCAAAAAGTTACTTTCACATTTCACCTGTTTCAACAATGTAAAACGTAAAACTCCAAAAAAAACTGCTATTTGACGTCAGCTATTCCACCACTCAATTCCTATTTTCTCCTCTTTAATCAGGGATTTGTCTATAGAATTTAGGCTAATATATTTTCCATCTATTAGCTGTGTAGTCATATACTTTTTGGCGTGTCTCTTTTTTCTGAAAAAAAAAGAAACTGACACCAAACTTTAGTCTTCTGTTTCCTAGAAAATGTCCTTTTAGCACGCGAAGAAAAAAGGACATTAGAAACTGAATGCTCCCACTCTACTGCAAAACTTTTTTCCCAAAAGAAATAGAAGACTCAGGTGAAAAAAAAGTAGAGAATGAAAATGGATGCGGATGTCTCAAAAAGAGACAGAAGAGCAGATGCTGGAGAAACTAGCCATTTGCATAATTGACGTTGAGGACCACTAGGGTCTCTCAGTGCACACACCTTGAAAATAGTGCATAGGAAGGCAACGAAGGTGAAGAGAAAAAGAGTAAGCTAACGGACGGCTTCCTTATAATTACTAGGGAGGGAAACCGGAGAGAAAGGTTCTATTCAACCAACGCCTTCCCCTTTCGTTCACCCCCCGTTCCATCCGGTTCGTCCTCCTGAGATTTTGCACATACTGCTCTTCC</canonical>
            <polymorphic>TCTGATTTCTTTGTTCCCACATTCATTATTCATTCATGAATTTATATTTTTTCAAATAAAATGTATCTAGCCGAAAAATATTTTTCTCGATTTTTTCCTCAATTTTGATTAACGTGCTATTGTTTTGTTCAGATGAGTGCCCAGCTACAGGAATTAAAAAATAGTTAGAAGTTGTACAAAATGTAATTTTTTGTTGGAATGTTTAATTTACAATCAAAAGCGAATTTTTCGGTTCGTTAAATTTTCTTTTTTTATCTACAAAGCCCAAATTATCGTGATAAACTTTTCAGTCAAGTTTCAAAGAGTCATACCGAAGGATATAATTCTGATATCTTGCAAAAAGTTACTTTCACATTTCACCTGTTTCAACAATGTAAAACGTAAAACTCCAAAAAAAACTGCTATTTGACGTCAGCTATTCCACCACTCAATTCCTATTTTCTCCTCTTTAATCAGGGATTTGTCTATAGAATTTAGGCTAATATATTTTCCATCTATTRGCTGTGTAGTCATATACTTTTTGGCGTGTCTCTTTTTTCTGAAAAAAAAAGAAACTGACACCAAACTTTAGTCTTCTGTTTCCTAGAAAATGTCCTTTTAGCACGCGAAGAAAAAAGGACATTAGAAACTGAATGCTCCCACTCTACTGCAAAACTTTTTTCCCAAAAGAAATAGAAGACTCAGGTGAAAAAAAAGTAGAGAATGAAAATGGATGCGGATGTCTCAAAAAGAGACAGAAGAGCAGATGCTGGAGAAACTAGCCATTTGCATAATTGACGTTGAGGACCACTAGGGTCTCTCAGTGCACACACCTTGAAAATAGTGCATAGGAAGGCAACGAAGGTGAAGAGAAAAAGAGTAAGCTAACGGACGGCTTCCTTATAATTACTAGGGAGGGAAACCGGAGAGAAAGGTTCTATTCAACCAACGCCTTCCCCTTTCGTTCACCCCCCGTTCCATCCGGTTCGTCCTCCTGAGATTTTGCACATACTGCTCTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>362 271 144 137 86</canonical_bands>
                <polymorphic_bands>448 271 144 137</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>260 152 126 119 102 74 70 63 23 11</canonical_bands>
                <polymorphic_bands>283 152 126 119 102 74 70 63 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTCTGATATCTTGCAAAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TAAAGTTTGGTGTCAGTTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTCTGATATCTTGCAAAAAGTTACTTTCACATTTCACCTGTTTCAACAATGTAAAACGTAAAACTCCAAAAAAAACTGCTATTTGACGTCAGCTATTCCACCACTCAATTCCTATTTTCTCCTCTTTAATCAGGGATTTGTCTATAGAATTTAGGCTAATATATTTTCCATCTATTAGCTGTGTAGTCATATACTTTTTGGCGTGTCTCTTTTTTCTGAAAAAAAAAGAAACTGACACCAAACTTTA</canonical_amplicon>
		<polymorphic_amplicon>AATTCTGATATCTTGCAAAAAGTTACTTTCACATTTCACCTGTTTCAACAATGTAAAACGTAAAACTCCAAAAAAAACTGCTATTTGACGTCAGCTATTCCACCACTCAATTCCTATTTTCTCCTCTTTAATCAGGGATTTGTCTATAGAATTTAGGCTAATATATTTTCCATCTATTRGCTGTGTAGTCATATACTTTTTGGCGTGTCTCTTTTTTCTGAAAAAAAAAGAAACTGACACCAAACTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21709</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1023030</contig_pos>
        <strand></strand>
        <context>TCCCAAAAGA[A/T]WTAGAAGACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTAGAAACTGAATGCTCCCACTCTACTGCAAAACTTTTTTCCCAAAAGA</left_flank>
        <right_flank>ATAGAAGACTCAGGTGAAAAAAAAGTAGAGAATGAAAATGGATGCGGATG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTACAAAATGTAATTTTTTGTTGGAATGTTTAATTTACAATCAAAAGCGAATTTTTCGGTTCGTTAAATTTTCTTTTTTTATCTACAAAGCCCAAATTATCGTGATAAACTTTTCAGTCAAGTTTCAAAGAGTCATACCGAAGGATATAATTCTGATATCTTGCAAAAAGTTACTTTCACATTTCACCTGTTTCAACAATGTAAAACGTAAAACTCCAAAAAAAACTGCTATTTGACGTCAGCTATTCCACCACTCAATTCCTATTTTCTCCTCTTTAATCAGGGATTTGTCTATAGAATTTAGGCTAATATATTTTCCATCTATTAGCTGTGTAGTCATATACTTTTTGGCGTGTCTCTTTTTTCTGAAAAAAAAAGAAACTGACACCAAACTTTAGTCTTCTGTTTCCTAGAAAATGTCCTTTTAGCACGCGAAGAAAAAAGGACATTAGAAACTGAATGCTCCCACTCTACTGCAAAACTTTTTTCCCAAAAGAAATAGAAGACTCAGGTGAAAAAAAAGTAGAGAATGAAAATGGATGCGGATGTCTCAAAAAGAGACAGAAGAGCAGATGCTGGAGAAACTAGCCATTTGCATAATTGACGTTGAGGACCACTAGGGTCTCTCAGTGCACACACCTTGAAAATAGTGCATAGGAAGGCAACGAAGGTGAAGAGAAAAAGAGTAAGCTAACGGACGGCTTCCTTATAATTACTAGGGAGGGAAACCGGAGAGAAAGGTTCTATTCAACCAACGCCTTCCCCTTTCGTTCACCCCCCGTTCCATCCGGTTCGTCCTCCTGAGATTTTGCACATACTGCTCTTCCATACATTTCGCATGTGTATTTTTTTTCTTCTAGTCATTTCGTAGCCATGGCAATTCTTTTCTCCCCGTTAGACATGGGCCCGGTTCTATAATATTTTTCTTTGAGATCAGAGAGAGAGGGCTTGCTCTTCGTCTCTCGATTGAGAGAGAGAGAGAGAGGGGAGCTCATCAT</canonical>
            <polymorphic>TTGTACAAAATGTAATTTTTTGTTGGAATGTTTAATTTACAATCAAAAGCGAATTTTTCGGTTCGTTAAATTTTCTTTTTTTATCTACAAAGCCCAAATTATCGTGATAAACTTTTCAGTCAAGTTTCAAAGAGTCATACCGAAGGATATAATTCTGATATCTTGCAAAAAGTTACTTTCACATTTCACCTGTTTCAACAATGTAAAACGTAAAACTCCAAAAAAAACTGCTATTTGACGTCAGCTATTCCACCACTCAATTCCTATTTTCTCCTCTTTAATCAGGGATTTGTCTATAGAATTTAGGCTAATATATTTTCCATCTATTAGCTGTGTAGTCATATACTTTTTGGCGTGTCTCTTTTTTCTGAAAAAAAAAGAAACTGACACCAAACTTTAGTCTTCTGTTTCCTAGAAAATGTCCTTTTAGCACGCGAAGAAAAAAGGACATTAGAAACTGAATGCTCCCACTCTACTGCAAAACTTTTTTCCCAAAAGAWATAGAAGACTCAGGTGAAAAAAAAGTAGAGAATGAAAATGGATGCGGATGTCTCAAAAAGAGACAGAAGAGCAGATGCTGGAGAAACTAGCCATTTGCATAATTGACGTTGAGGACCACTAGGGTCTCTCAGTGCACACACCTTGAAAATAGTGCATAGGAAGGCAACGAAGGTGAAGAGAAAAAGAGTAAGCTAACGGACGGCTTCCTTATAATTACTAGGGAGGGAAACCGGAGAGAAAGGTTCTATTCAACCAACGCCTTCCCCTTTCGTTCACCCCCCGTTCCATCCGGTTCGTCCTCCTGAGATTTTGCACATACTGCTCTTCCATACATTTCGCATGTGTATTTTTTTTCTTCTAGTCATTTCGTAGCCATGGCAATTCTTTTCTCCCCGTTAGACATGGGCCCGGTTCTATAATATTTTTCTTTGAGATCAGAGAGAGAGGGCTTGCTCTTCGTCTCTCGATTGAGAGAGAGAGAGAGAGGGGAGCTCATCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCTAGAAAATGTCCTTTTAGC</pcr_primer_p1>
		<pcr_primer_p2>TATGCACTATTTTCAAGGTGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCCTAGAAAATGTCCTTTTAGCACGCGAAGAAAAAAGGACATTAGAAACTGAATGCTCCCACTCTACTGCAAAACTTTTTTCCCAAAAGAAATAGAAGACTCAGGTGAAAAAAAAGTAGAGAATGAAAATGGATGCGGATGTCTCAAAAAGAGACAGAAGAGCAGATGCTGGAGAAACTAGCCATTTGCATAATTGACGTTGAGGACCACTAGGGTCTCTCAGTGCACACACCTTGAAAATAGTGCATA</canonical_amplicon>
		<polymorphic_amplicon>TTCCTAGAAAATGTCCTTTTAGCACGCGAAGAAAAAAGGACATTAGAAACTGAATGCTCCCACTCTACTGCAAAACTTTTTTCCCAAAAGAWATAGAAGACTCAGGTGAAAAAAAAGTAGAGAATGAAAATGGATGCGGATGTCTCAAAAAGAGACAGAAGAGCAGATGCTGGAGAAACTAGCCATTTGCATAATTGACGTTGAGGACCACTAGGGTCTCTCAGTGCACACACCTTGAAAATAGTGCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21710</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1027389</contig_pos>
        <strand>+</strand>
        <context>GAAATGAAAG[A/G]AAAACGTATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGATCTATTTGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAG</left_flank>
        <right_flank>AAAACGTATTCCTTGTGTCCCTTTTCTCTGTCGAGATATGCTCTTCTTCA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTTCGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTATTTTCCCATATATGGCTAAATCAGCAGGTTTCTTTCAATTTCTTTTTTTTTTGTCAGTAGACTTGGAGCTTGTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAGGTAGTAGAAGAGAGCAGGCGATCTATTTGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGGAAAACGTATTCCTTGTGTCCCTTTTCTCTGTCGAGATATGCTCTTCTTCATTCCCCTCACCCGCCGGGAGCCCCCTCTCTTCCCGTCGCCGCCGCCACCGACGATGGGGCCGCTGTAACAATACCAGTGTTCTATCGGACTCTGTTTCGTTTTCCGAAACGTCGAGAAGAAGGAGAAGAAGTCTCGGGGCTCAATTTATTGGCTGCGCTCTTCAAGACCATCCATCCATCGCCCAACTTTCTTTCTGCTTCTTCTCTGTTTCTTCTTTATCTCTTTTTCATCTCTCGGACGTTCTCGTTGCACTCACGTCTTTGTCGATAATGATTGGATCTCTTTTAGCCCTTTTCATTTCTCTCCAATTATTTTTTCTAGAAATTCTATTGAACAATGTCCATTCGCTTAACCAGTAACCACACCTTGTTTTGCTTTTTTTCAATCGGAAATGAGACTTCCTCATCGCTAGGAACACCTTCTTTTCAGTTGGTTCTGTCTTTGTCGGT</canonical>
            <polymorphic>CTCTTCGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTATTTTCCCATATATGGCTAAATCAGCAGGTTTCTTTCAATTTCTTTTTTTTTTGTCAGTAGACTTGGAGCTTGTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAGGTAGTAGAAGAGAGCAGGCGATCTATTTGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGRAAAACGTATTCCTTGTGTCCCTTTTCTCTGTCGAGATATGCTCTTCTTCATTCCCCTCACCCGCCGGGAGCCCCCTCTCTTCCCGTCGCCGCCGCCACCGACGATGGGGCCGCTGTAACAATACCAGTGTTCTATCGGACTCTGTTTCGTTTTCCGAAACGTCGAGAAGAAGGAGAAGAAGTCTCGGGGCTCAATTTATTGGCTGCGCTCTTCAAGACCATCCATCCATCGCCCAACTTTCTTTCTGCTTCTTCTCTGTTTCTTCTTTATCTCTTTTTCATCTCTCGGACGTTCTCGTTGCACTCACGTCTTTGTCGATAATGATTGGATCTCTTTTAGCCCTTTTCATTTCTCTCCAATTATTTTTTCTAGAAATTCTATTGAACAATGTCCATTCGCTTAACCAGTAACCACACCTTGTTTTGCTTTTTTTCAATCGGAAATGAGACTTCCTCATCGCTAGGAACACCTTCTTTTCAGTTGGTTCTGTCTTTGTCGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATGATGATAGAGATGTGAAA</pcr_primer_p1>
		<pcr_primer_p2>AGAGTCCGATAGAACACTGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CGATGATGATAGAGATGTGAAAAGGATAGGTAGTAGAAGAGAGCAGGCGATCTATTTGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGGAAAACGTATTCCTTGTGTCCCTTTTCTCTGTCGAGATATGCTCTTCTTCATTCCCCTCACCCGCCGGGAGCCCCCTCTCTTCCCGTCGCCGCCGCCACCGACGATGGGGCCGCTGTAACAATACCAGTGTTCTATCGGACTCT</canonical_amplicon>
		<polymorphic_amplicon>CGATGATGATAGAGATGTGAAAAGGATAGGTAGTAGAAGAGAGCAGGCGATCTATTTGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGRAAAACGTATTCCTTGTGTCCCTTTTCTCTGTCGAGATATGCTCTTCTTCATTCCCCTCACCCGCCGGGAGCCCCCTCTCTTCCCGTCGCCGCCGCCACCGACGATGGGGCCGCTGTAACAATACCAGTGTTCTATCGGACTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21711</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1027348</contig_pos>
        <strand>+</strand>
        <context>GCGATCTATT[C/T]GACAGCTGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGATAGAGATGTGAAAAGGATAGGTAGTAGAAGAGAGCAGGCGATCTATT</left_flank>
        <right_flank>GACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGGAAAACGTAT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTATTTTCCCATATATGGCTAAATCAGCAGGTTTCTTTCAATTTCTTTTTTTTTTGTCAGTAGACTTGGAGCTTGTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAGGTAGTAGAAGAGAGCAGGCGATCTATTTGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGGAAAACGTATTCCTTGTGTCCCTTTTCTCTGTCGAGATATGCTCTTCTTCATTCCCCTCACCCGCCGGGAGCCCCCTCTCTTCCCGTCGCCGCCGCCACCGACGATGGGGCCGCTGTAACAATACCAGTGTTCTATCGGACTCTGTTTCGTTTTCCGAAACGTCGAGAAGAAGGAGAAGAAGTCTCGGGGCTCAATTTATTGGCTGCGCTCTTCAAGACCATCCATCCATCGCCCAACTTTCTTTCTGCTTCTTCTCTGTTTCTTCTTTATCTCTTTTTCATCTCTCGGACGTTCTCGTTGCACTCACGTCTTTGTCGATAATGATTGGATCTCTTTTAGCCCTTTTCATTTCTCTCCAATTATTTTTTCTAGAAATTCTATTGAACAATGTCCATTCGCTTAACCAGTAACCACACCTTGTTTTGCTTTTTTTCAATCGGAAATGAGACTTCCTCATCG</canonical>
            <polymorphic>TTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTATTTTCCCATATATGGCTAAATCAGCAGGTTTCTTTCAATTTCTTTTTTTTTTGTCAGTAGACTTGGAGCTTGTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAGGTAGTAGAAGAGAGCAGGCGATCTATTYGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGGAAAACGTATTCCTTGTGTCCCTTTTCTCTGTCGAGATATGCTCTTCTTCATTCCCCTCACCCGCCGGGAGCCCCCTCTCTTCCCGTCGCCGCCGCCACCGACGATGGGGCCGCTGTAACAATACCAGTGTTCTATCGGACTCTGTTTCGTTTTCCGAAACGTCGAGAAGAAGGAGAAGAAGTCTCGGGGCTCAATTTATTGGCTGCGCTCTTCAAGACCATCCATCCATCGCCCAACTTTCTTTCTGCTTCTTCTCTGTTTCTTCTTTATCTCTTTTTCATCTCTCGGACGTTCTCGTTGCACTCACGTCTTTGTCGATAATGATTGGATCTCTTTTAGCCCTTTTCATTTCTCTCCAATTATTTTTTCTAGAAATTCTATTGAACAATGTCCATTCGCTTAACCAGTAACCACACCTTGTTTTGCTTTTTTTCAATCGGAAATGAGACTTCCTCATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCGGATTTATATTTCCAATTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAAGGGACACAAGGAATAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAGGTAGTAGAAGAGAGCAGGCGATCTATTTGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGGAAAACGTATTCCTTGTGTCCCTTTTC</canonical_amplicon>
		<polymorphic_amplicon>GTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAGGTAGTAGAAGAGAGCAGGCGATCTATTYGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGGAAAACGTATTCCTTGTGTCCCTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21712</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1027321</contig_pos>
        <strand>+</strand>
        <context>AAAAGGATAG[A/G]TAGTAGAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAG</left_flank>
        <right_flank>TAGTAGAAGAGAGCAGGCGATCTATTTGACAGCTGTCGAGGGTAGGAAAG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATTGATGCAGTCAAGTAATCCACAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTATTTTCCCATATATGGCTAAATCAGCAGGTTTCTTTCAATTTCTTTTTTTTTTGTCAGTAGACTTGGAGCTTGTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAGGTAGTAGAAGAGAGCAGGCGATCTATTTGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGGAAAACGTATTCCTTGTGTCCCTTTTCTCTGTCGAGATATGCTCTTCTTCATTCCCCTCACCCGCCGGGAGCCCCCTCTCTTCCCGTCGCCGCCGCCACCGACGATGGGGCCGCTGTAACAATACCAGTGTTCTATCGGACTCTGTTTCGTTTTCCGAAACGTCGAGAAGAAGGAGAAGAAGTCTCGGGGCTCAATTTATTGGCTGCGCTCTTCAAGACCATCCATCCATCGCCCAACTTTCTTTCTGCTTCTTCTCTGTTTCTTCTTTATCTCTTTTTCATCTCTCGGACGTTCTCGTTGCACTCACGTCTTTGTCGATAATGATTGGATCTCTTTTAGCCCTTTTCATTTCTCTCCAATTATTTTTTCTAGAAATTCTATTGAACAATGTCCATTCGCTTAACCAGTAACCACACCTTGTTTTGCTTTTTT</canonical>
            <polymorphic>TGATTGATGCAGTCAAGTAATCCACAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTATTTTCCCATATATGGCTAAATCAGCAGGTTTCTTTCAATTTCTTTTTTTTTTGTCAGTAGACTTGGAGCTTGTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAGRTAGTAGAAGAGAGCAGGCGATCTATTTGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGGAAAACGTATTCCTTGTGTCCCTTTTCTCTGTCGAGATATGCTCTTCTTCATTCCCCTCACCCGCCGGGAGCCCCCTCTCTTCCCGTCGCCGCCGCCACCGACGATGGGGCCGCTGTAACAATACCAGTGTTCTATCGGACTCTGTTTCGTTTTCCGAAACGTCGAGAAGAAGGAGAAGAAGTCTCGGGGCTCAATTTATTGGCTGCGCTCTTCAAGACCATCCATCCATCGCCCAACTTTCTTTCTGCTTCTTCTCTGTTTCTTCTTTATCTCTTTTTCATCTCTCGGACGTTCTCGTTGCACTCACGTCTTTGTCGATAATGATTGGATCTCTTTTAGCCCTTTTCATTTCTCTCCAATTATTTTTTCTAGAAATTCTATTGAACAATGTCCATTCGCTTAACCAGTAACCACACCTTGTTTTGCTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCGGATTTATATTTCCAATTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAAGGGACACAAGGAATAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAGGTAGTAGAAGAGAGCAGGCGATCTATTTGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGGAAAACGTATTCCTTGTGTCCCTTTTC</canonical_amplicon>
		<polymorphic_amplicon>GTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAGRTAGTAGAAGAGAGCAGGCGATCTATTTGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGGAAAACGTATTCCTTGTGTCCCTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21713</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1027291</contig_pos>
        <strand>+</strand>
        <context>CGACGAGTCG[A/C]CGATGATGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCG</left_flank>
        <right_flank>CGATGATGATAGAGATGTGAAAAGGATAGGTAGTAGAAGAGAGCAGGCGA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTGAAAGTGCAAACCCATCATGTTATCGTGATTGATGCAGTCAAGTAATCCACAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTATTTTCCCATATATGGCTAAATCAGCAGGTTTCTTTCAATTTCTTTTTTTTTTGTCAGTAGACTTGGAGCTTGTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAGGTAGTAGAAGAGAGCAGGCGATCTATTTGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGGAAAACGTATTCCTTGTGTCCCTTTTCTCTGTCGAGATATGCTCTTCTTCATTCCCCTCACCCGCCGGGAGCCCCCTCTCTTCCCGTCGCCGCCGCCACCGACGATGGGGCCGCTGTAACAATACCAGTGTTCTATCGGACTCTGTTTCGTTTTCCGAAACGTCGAGAAGAAGGAGAAGAAGTCTCGGGGCTCAATTTATTGGCTGCGCTCTTCAAGACCATCCATCCATCGCCCAACTTTCTTTCTGCTTCTTCTCTGTTTCTTCTTTATCTCTTTTTCATCTCTCGGACGTTCTCGTTGCACTCACGTCTTTGTCGATAATGATTGGATCTCTTTTAGCCCTTTTCATTTCTCTCCAATTATTTTTTCTAGAAATTCTATTGAACAATGTCCATTCGCTTA</canonical>
            <polymorphic>ATCTGAAAGTGCAAACCCATCATGTTATCGTGATTGATGCAGTCAAGTAATCCACAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTATTTTCCCATATATGGCTAAATCAGCAGGTTTCTTTCAATTTCTTTTTTTTTTGTCAGTAGACTTGGAGCTTGTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGMCGATGATGATAGAGATGTGAAAAGGATAGGTAGTAGAAGAGAGCAGGCGATCTATTTGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGGAAAACGTATTCCTTGTGTCCCTTTTCTCTGTCGAGATATGCTCTTCTTCATTCCCCTCACCCGCCGGGAGCCCCCTCTCTTCCCGTCGCCGCCGCCACCGACGATGGGGCCGCTGTAACAATACCAGTGTTCTATCGGACTCTGTTTCGTTTTCCGAAACGTCGAGAAGAAGGAGAAGAAGTCTCGGGGCTCAATTTATTGGCTGCGCTCTTCAAGACCATCCATCCATCGCCCAACTTTCTTTCTGCTTCTTCTCTGTTTCTTCTTTATCTCTTTTTCATCTCTCGGACGTTCTCGTTGCACTCACGTCTTTGTCGATAATGATTGGATCTCTTTTAGCCCTTTTCATTTCTCTCCAATTATTTTTTCTAGAAATTCTATTGAACAATGTCCATTCGCTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 359 138</canonical_bands>
                <polymorphic_bands>641 359</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>333 153 131 104 86 69 63 53 8</canonical_bands>
                <polymorphic_bands>333 153 131 104 86 77 63 53</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>502 277 221</canonical_bands>
                <polymorphic_bands>723 277</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 277 138 83</canonical_bands>
                <polymorphic_bands>640 277 83</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>494 238 184 61 15 8</canonical_bands>
                <polymorphic_bands>494 238 192 61 15</polymorphic_bands>
            </assay>
            <assay>
                <site>GTCGAC</site>
                <isoschizomers>
                    <enzyme>SalI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCGGATTTATATTTCCAATTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAAGGGACACAAGGAATAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAGGTAGTAGAAGAGAGCAGGCGATCTATTTGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGGAAAACGTATTCCTTGTGTCCCTTTTC</canonical_amplicon>
		<polymorphic_amplicon>GTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGMCGATGATGATAGAGATGTGAAAAGGATAGGTAGTAGAAGAGAGCAGGCGATCTATTTGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGGAAAACGTATTCCTTGTGTCCCTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21714</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1027245</contig_pos>
        <strand>+</strand>
        <context>CGTAAAAGTA[A/C]GAGTGATGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTA</left_flank>
        <right_flank>GAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTGCTTCATGAATCTCAGTTTCTGATCCAATTTGTGAGCCAAAAATCTGAAAGTGCAAACCCATCATGTTATCGTGATTGATGCAGTCAAGTAATCCACAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTATTTTCCCATATATGGCTAAATCAGCAGGTTTCTTTCAATTTCTTTTTTTTTTGTCAGTAGACTTGGAGCTTGTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAGGTAGTAGAAGAGAGCAGGCGATCTATTTGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGGAAAACGTATTCCTTGTGTCCCTTTTCTCTGTCGAGATATGCTCTTCTTCATTCCCCTCACCCGCCGGGAGCCCCCTCTCTTCCCGTCGCCGCCGCCACCGACGATGGGGCCGCTGTAACAATACCAGTGTTCTATCGGACTCTGTTTCGTTTTCCGAAACGTCGAGAAGAAGGAGAAGAAGTCTCGGGGCTCAATTTATTGGCTGCGCTCTTCAAGACCATCCATCCATCGCCCAACTTTCTTTCTGCTTCTTCTCTGTTTCTTCTTTATCTCTTTTTCATCTCTCGGACGTTCTCGTTGCACTCACGTCTTTGTCGATAATGATTGGATCTCTTTTAGCCCTTTTCATTTCTCTC</canonical>
            <polymorphic>CTGTGCTTCATGAATCTCAGTTTCTGATCCAATTTGTGAGCCAAAAATCTGAAAGTGCAAACCCATCATGTTATCGTGATTGATGCAGTCAAGTAATCCACAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTATTTTCCCATATATGGCTAAATCAGCAGGTTTCTTTCAATTTCTTTTTTTTTTGTCAGTAGACTTGGAGCTTGTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTAMGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAGGTAGTAGAAGAGAGCAGGCGATCTATTTGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGGAAAACGTATTCCTTGTGTCCCTTTTCTCTGTCGAGATATGCTCTTCTTCATTCCCCTCACCCGCCGGGAGCCCCCTCTCTTCCCGTCGCCGCCGCCACCGACGATGGGGCCGCTGTAACAATACCAGTGTTCTATCGGACTCTGTTTCGTTTTCCGAAACGTCGAGAAGAAGGAGAAGAAGTCTCGGGGCTCAATTTATTGGCTGCGCTCTTCAAGACCATCCATCCATCGCCCAACTTTCTTTCTGCTTCTTCTCTGTTTCTTCTTTATCTCTTTTTCATCTCTCGGACGTTCTCGTTGCACTCACGTCTTTGTCGATAATGATTGGATCTCTTTTAGCCCTTTTCATTTCTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATCACTTCTCGTGCTCATTAT</pcr_primer_p1>
		<pcr_primer_p2>CTATCCTTTTCACATCTCTATCATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATCACTTCTCGTGCTCATTATTTTCCCATATATGGCTAAATCAGCAGGTTTCTTTCAATTTCTTTTTTTTTTGTCAGTAGACTTGGAGCTTGTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAG</canonical_amplicon>
		<polymorphic_amplicon>CTATCACTTCTCGTGCTCATTATTTTCCCATATATGGCTAAATCAGCAGGTTTCTTTCAATTTCTTTTTTTTTTGTCAGTAGACTTGGAGCTTGTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTAMGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21715</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1027220</contig_pos>
        <strand>+</strand>
        <context>TTCAGTGAAT[G/T]TATATTTCGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAAT</left_flank>
        <right_flank>TATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATTACCCCACAAAGTGCACAATTCTGTGCTTCATGAATCTCAGTTTCTGATCCAATTTGTGAGCCAAAAATCTGAAAGTGCAAACCCATCATGTTATCGTGATTGATGCAGTCAAGTAATCCACAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTATTTTCCCATATATGGCTAAATCAGCAGGTTTCTTTCAATTTCTTTTTTTTTTGTCAGTAGACTTGGAGCTTGTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAGGTAGTAGAAGAGAGCAGGCGATCTATTTGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGGAAAACGTATTCCTTGTGTCCCTTTTCTCTGTCGAGATATGCTCTTCTTCATTCCCCTCACCCGCCGGGAGCCCCCTCTCTTCCCGTCGCCGCCGCCACCGACGATGGGGCCGCTGTAACAATACCAGTGTTCTATCGGACTCTGTTTCGTTTTCCGAAACGTCGAGAAGAAGGAGAAGAAGTCTCGGGGCTCAATTTATTGGCTGCGCTCTTCAAGACCATCCATCCATCGCCCAACTTTCTTTCTGCTTCTTCTCTGTTTCTTCTTTATCTCTTTTTCATCTCTCGGACGTTCTCGTTGCACTCACGTCTTTGTCGATAATGATTGGATC</canonical>
            <polymorphic>TTATTACCCCACAAAGTGCACAATTCTGTGCTTCATGAATCTCAGTTTCTGATCCAATTTGTGAGCCAAAAATCTGAAAGTGCAAACCCATCATGTTATCGTGATTGATGCAGTCAAGTAATCCACAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTATTTTCCCATATATGGCTAAATCAGCAGGTTTCTTTCAATTTCTTTTTTTTTTGTCAGTAGACTTGGAGCTTGTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATKTATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAGGTAGTAGAAGAGAGCAGGCGATCTATTTGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGGAAAACGTATTCCTTGTGTCCCTTTTCTCTGTCGAGATATGCTCTTCTTCATTCCCCTCACCCGCCGGGAGCCCCCTCTCTTCCCGTCGCCGCCGCCACCGACGATGGGGCCGCTGTAACAATACCAGTGTTCTATCGGACTCTGTTTCGTTTTCCGAAACGTCGAGAAGAAGGAGAAGAAGTCTCGGGGCTCAATTTATTGGCTGCGCTCTTCAAGACCATCCATCCATCGCCCAACTTTCTTTCTGCTTCTTCTCTGTTTCTTCTTTATCTCTTTTTCATCTCTCGGACGTTCTCGTTGCACTCACGTCTTTGTCGATAATGATTGGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATCACTTCTCGTGCTCATTAT</pcr_primer_p1>
		<pcr_primer_p2>CTATCCTTTTCACATCTCTATCATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATCACTTCTCGTGCTCATTATTTTCCCATATATGGCTAAATCAGCAGGTTTCTTTCAATTTCTTTTTTTTTTGTCAGTAGACTTGGAGCTTGTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAG</canonical_amplicon>
		<polymorphic_amplicon>CTATCACTTCTCGTGCTCATTATTTTCCCATATATGGCTAAATCAGCAGGTTTCTTTCAATTTCTTTTTTTTTTGTCAGTAGACTTGGAGCTTGTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATKTATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21716</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1027020</contig_pos>
        <strand>+</strand>
        <context>TGATTTATWA[A/T]TTGTGATATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTA</left_flank>
        <right_flank>TTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAATTCTGTTTTGTCAGTTGGCTACTCTCGTACCCGGGAATGAAGAGTGGAAGGAAACAAATCTTGTTTTACACTAGTTATCGCACCCGATCACTCTTTTCTTCAATTAGGTGCGTTAACTGATGATGTTTTCGAAATTCAGACTTAATCAGCAATCCTGTTGTACAACACAATATATTCCTCATGAAAAATTTCTGTTTTATTACCCCACAAAGTGCACAATTCTGTGCTTCATGAATCTCAGTTTCTGATCCAATTTGTGAGCCAAAAATCTGAAAGTGCAAACCCATCATGTTATCGTGATTGATGCAGTCAAGTAATCCACAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTATTTTCCCATATATGGCTAAATCAGCAGGTTTCTTTCAATTTCTTTTTTTTTTGTCAGTAGACTTGGAGCTTGTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAGGTAGTAGAAGAGAGCAGGCGATCTATTTGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGGAAAACGTATTCCTTGTGTCCCTTTTCTCTGTCGAGATATGCTCTTCTTCATTCCCCTCACCCGCCGGGAGCCCCCTCTCTTCCCGTCGCCGCCGCCACCGACGATGGGGCCGCTGTAACAATACCAGTGTT</canonical>
            <polymorphic>CTAATTCTGTTTTGTCAGTTGGCTACTCTCGTACCCGGGAATGAAGAGTGGAAGGAAACAAATCTTGTTTTACACTAGTTATCGCACCCGATCACTCTTTTCTTCAATTAGGTGCGTTAACTGATGATGTTTTCGAAATTCAGACTTAATCAGCAATCCTGTTGTACAACACAATATATTCCTCATGAAAAATTTCTGTTTTATTACCCCACAAAGTGCACAATTCTGTGCTTCATGAATCTCAGTTTCTGATCCAATTTGTGAGCCAAAAATCTGAAAGTGCAAACCCATCATGTTATCGTGATTGATGCAGTCAAGTAATCCACAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAWTTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTATTTTCCCATATATGGCTAAATCAGCAGGTTTCTTTCAATTTCTTTTTTTTTTGTCAGTAGACTTGGAGCTTGTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAGGTAGTAGAAGAGAGCAGGCGATCTATTTGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGGAAAACGTATTCCTTGTGTCCCTTTTCTCTGTCGAGATATGCTCTTCTTCATTCCCCTCACCCGCCGGGAGCCCCCTCTCTTCCCGTCGCCGCCGCCACCGACGATGGGGCCGCTGTAACAATACCAGTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>469 242 117 70 39 34 29</canonical_bands>
                <polymorphic_bands>469 242 117 104 39 29</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>340 103 94 76 57 54 52 50 42 34 34 31 31 2</canonical_bands>
                <polymorphic_bands>340 103 94 91 76 54 52 50 42 34 31 31 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTTGTCTTTTTCATTCTGAAC</pcr_primer_p1>
		<pcr_primer_p2>ATAATGAGCACGAGAAGTGATAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTAT</canonical_amplicon>
		<polymorphic_amplicon>CAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAWTTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21717</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1027018</contig_pos>
        <strand>+</strand>
        <context>TTTGATTTAT[A/T]AWTTGTGATA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTAT</left_flank>
        <right_flank>AATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCTAATTCTGTTTTGTCAGTTGGCTACTCTCGTACCCGGGAATGAAGAGTGGAAGGAAACAAATCTTGTTTTACACTAGTTATCGCACCCGATCACTCTTTTCTTCAATTAGGTGCGTTAACTGATGATGTTTTCGAAATTCAGACTTAATCAGCAATCCTGTTGTACAACACAATATATTCCTCATGAAAAATTTCTGTTTTATTACCCCACAAAGTGCACAATTCTGTGCTTCATGAATCTCAGTTTCTGATCCAATTTGTGAGCCAAAAATCTGAAAGTGCAAACCCATCATGTTATCGTGATTGATGCAGTCAAGTAATCCACAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTATTTTCCCATATATGGCTAAATCAGCAGGTTTCTTTCAATTTCTTTTTTTTTTGTCAGTAGACTTGGAGCTTGTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAGGTAGTAGAAGAGAGCAGGCGATCTATTTGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGGAAAACGTATTCCTTGTGTCCCTTTTCTCTGTCGAGATATGCTCTTCTTCATTCCCCTCACCCGCCGGGAGCCCCCTCTCTTCCCGTCGCCGCCGCCACCGACGATGGGGCCGCTGTAACAATACCAGTG</canonical>
            <polymorphic>TGCTAATTCTGTTTTGTCAGTTGGCTACTCTCGTACCCGGGAATGAAGAGTGGAAGGAAACAAATCTTGTTTTACACTAGTTATCGCACCCGATCACTCTTTTCTTCAATTAGGTGCGTTAACTGATGATGTTTTCGAAATTCAGACTTAATCAGCAATCCTGTTGTACAACACAATATATTCCTCATGAAAAATTTCTGTTTTATTACCCCACAAAGTGCACAATTCTGTGCTTCATGAATCTCAGTTTCTGATCCAATTTGTGAGCCAAAAATCTGAAAGTGCAAACCCATCATGTTATCGTGATTGATGCAGTCAAGTAATCCACAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATWAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTATTTTCCCATATATGGCTAAATCAGCAGGTTTCTTTCAATTTCTTTTTTTTTTGTCAGTAGACTTGGAGCTTGTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAGGTAGTAGAAGAGAGCAGGCGATCTATTTGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGGAAAACGTATTCCTTGTGTCCCTTTTCTCTGTCGAGATATGCTCTTCTTCATTCCCCTCACCCGCCGGGAGCCCCCTCTCTTCCCGTCGCCGCCGCCACCGACGATGGGGCCGCTGTAACAATACCAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>467 242 119 70 39 34 29</canonical_bands>
                <polymorphic_bands>467 242 119 104 39 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTTGTCTTTTTCATTCTGAAC</pcr_primer_p1>
		<pcr_primer_p2>ATAATGAGCACGAGAAGTGATAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTAT</canonical_amplicon>
		<polymorphic_amplicon>CAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATWAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21718</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1026937</contig_pos>
        <strand>+</strand>
        <context>TTGAATGAAA[G/T]AGATTCTGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATCTCTTCGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAA</left_flank>
        <right_flank>AGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATGATTAGTTGTTGATAAGTTTTACCATTTTTTTCCATTATCAACCTTGACCTGACTGACTACTCCACTCAATCTCGTGTGCTAATTCTGTTTTGTCAGTTGGCTACTCTCGTACCCGGGAATGAAGAGTGGAAGGAAACAAATCTTGTTTTACACTAGTTATCGCACCCGATCACTCTTTTCTTCAATTAGGTGCGTTAACTGATGATGTTTTCGAAATTCAGACTTAATCAGCAATCCTGTTGTACAACACAATATATTCCTCATGAAAAATTTCTGTTTTATTACCCCACAAAGTGCACAATTCTGTGCTTCATGAATCTCAGTTTCTGATCCAATTTGTGAGCCAAAAATCTGAAAGTGCAAACCCATCATGTTATCGTGATTGATGCAGTCAAGTAATCCACAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTATTTTCCCATATATGGCTAAATCAGCAGGTTTCTTTCAATTTCTTTTTTTTTTGTCAGTAGACTTGGAGCTTGTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAGGTAGTAGAAGAGAGCAGGCGATCTATTTGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGGAAAACGTATTCCTTGTGTCCCTTTTCTCTGTCGAGATATGCTCTTCTT</canonical>
            <polymorphic>TGATGATTAGTTGTTGATAAGTTTTACCATTTTTTTCCATTATCAACCTTGACCTGACTGACTACTCCACTCAATCTCGTGTGCTAATTCTGTTTTGTCAGTTGGCTACTCTCGTACCCGGGAATGAAGAGTGGAAGGAAACAAATCTTGTTTTACACTAGTTATCGCACCCGATCACTCTTTTCTTCAATTAGGTGCGTTAACTGATGATGTTTTCGAAATTCAGACTTAATCAGCAATCCTGTTGTACAACACAATATATTCCTCATGAAAAATTTCTGTTTTATTACCCCACAAAGTGCACAATTCTGTGCTTCATGAATCTCAGTTTCTGATCCAATTTGTGAGCCAAAAATCTGAAAGTGCAAACCCATCATGTTATCGTGATTGATGCAGTCAAGTAATCCACAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAAKAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTATTTTCCCATATATGGCTAAATCAGCAGGTTTCTTTCAATTTCTTTTTTTTTTGTCAGTAGACTTGGAGCTTGTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAGGTAGTAGAAGAGAGCAGGCGATCTATTTGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGGAAAACGTATTCCTTGTGTCCCTTTTCTCTGTCGAGATATGCTCTTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTGTCTTTTTCATTCTGAAC</pcr_primer_p1>
		<pcr_primer_p2>ATAATGAGCACGAGAAGTGATAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTAT</canonical_amplicon>
		<polymorphic_amplicon>CAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAAKAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21719</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1026910</contig_pos>
        <strand>+</strand>
        <context>RACTATTCTT[A/G]AAATTACTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTGACTATTCTT</left_flank>
        <right_flank>AAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGC</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGTAAAAGTAGCAATTTTTCTTTCCTGATGATTAGTTGTTGATAAGTTTTACCATTTTTTTCCATTATCAACCTTGACCTGACTGACTACTCCACTCAATCTCGTGTGCTAATTCTGTTTTGTCAGTTGGCTACTCTCGTACCCGGGAATGAAGAGTGGAAGGAAACAAATCTTGTTTTACACTAGTTATCGCACCCGATCACTCTTTTCTTCAATTAGGTGCGTTAACTGATGATGTTTTCGAAATTCAGACTTAATCAGCAATCCTGTTGTACAACACAATATATTCCTCATGAAAAATTTCTGTTTTATTACCCCACAAAGTGCACAATTCTGTGCTTCATGAATCTCAGTTTCTGATCCAATTTGTGAGCCAAAAATCTGAAAGTGCAAACCCATCATGTTATCGTGATTGATGCAGTCAAGTAATCCACAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTATTTTCCCATATATGGCTAAATCAGCAGGTTTCTTTCAATTTCTTTTTTTTTTGTCAGTAGACTTGGAGCTTGTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAGGTAGTAGAAGAGAGCAGGCGATCTATTTGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGGAAAACGTATTCCTTGTGTCCC</canonical>
            <polymorphic>ACAGTAAAAGTAGCAATTTTTCTTTCCTGATGATTAGTTGTTGATAAGTTTTACCATTTTTTTCCATTATCAACCTTGACCTGACTGACTACTCCACTCAATCTCGTGTGCTAATTCTGTTTTGTCAGTTGGCTACTCTCGTACCCGGGAATGAAGAGTGGAAGGAAACAAATCTTGTTTTACACTAGTTATCGCACCCGATCACTCTTTTCTTCAATTAGGTGCGTTAACTGATGATGTTTTCGAAATTCAGACTTAATCAGCAATCCTGTTGTACAACACAATATATTCCTCATGAAAAATTTCTGTTTTATTACCCCACAAAGTGCACAATTCTGTGCTTCATGAATCTCAGTTTCTGATCCAATTTGTGAGCCAAAAATCTGAAAGTGCAAACCCATCATGTTATCGTGATTGATGCAGTCAAGTAATCCACAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTGACTATTCTTRAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTATTTTCCCATATATGGCTAAATCAGCAGGTTTCTTTCAATTTCTTTTTTTTTTGTCAGTAGACTTGGAGCTTGTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAGGTAGTAGAAGAGAGCAGGCGATCTATTTGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGGAAAACGTATTCCTTGTGTCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>359 242 227 70 39 34 29</canonical_bands>
                <polymorphic_bands>359 281 227 70 34 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTTGTCTTTTTCATTCTGAAC</pcr_primer_p1>
		<pcr_primer_p2>ATAATGAGCACGAGAAGTGATAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTAT</canonical_amplicon>
		<polymorphic_amplicon>CAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTGACTATTCTTRAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21720</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1094864</contig_pos>
        <strand>+</strand>
        <context>TGAAAATAAT[A/C]AAATTCAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAATTGCAGACTCAACAGCTTTCTTCAAATCATTTGCTTCTGAAAATAAT</left_flank>
        <right_flank>AAATTCAAAATAATCAAACAAAAAAGATCTATCTTACCAACAAAATGGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCATACATTTGGATAGCCTTGTGTGGCATGCCAATTATGATATAGAGCTGCTCAGCCTCAGCGAATCTTCCATGCTCATCCAAGTCTTCAGCTTTTGACAAGTATGATGAAGTGGTGACATCCTTTCCGTGAAATTCTACGGAGAGACGGAACGCGTCAGTCCATTTTCCATTTTTTCCGTACATCATGATGGCGTCGTTGAATAGACCGGCTTCAACAAATAGTCGCTCAGCTCTCTGCAAAAATTCTAGTTTCTTGAAACCGTTTTTCCTTTCGTTCTCCTACCTCATAGTCTCCTACACTCGAATAATGGTCAGCGATTTCTCCATAGTAAGTTGTACGCACTTTTTGGTCTTGAATGTTCTCAACGATCTGAAATATAAAGCTAAAATCTTTGCGTTGGGTTCTTGCGCTTTTACCGATAACGCCTTTGGCCATTCTTTGGCTCGAATTGCAGACTCAACAGCTTTCTTCAAATCATTTGCTTCTGAAAATAATCAAATTCAAAATAATCAAACAAAAAAGATCTATCTTACCAACAAAATGGTTCACAGCGGCATCGTACTGCCCGATATACTCTAGATGTAAACCCCATTCATGCTCGAGATCGACCACTTTCTCAGGATATGCGAATCGAGCGAGCTGGAAAAATTAGATTGTGTTTCTCGAAATTAAACAAGAAAAAATAATTATTTACTTGTATAGCTTTTCCGTATGCATCCCCTTTTTTATAGTTGTCAACGGCATTGTCAAAGTCTTTCAGCTTCTCGTAAACTTCTCCAGCCTTATCAAACAGTTGTGCTTTTCCGAGAGCCTCCGCCACTTGTCTCAAAACATTTGCATCTTGAGAGAGCACACTATCATTCATCACAGCATTCAGTGCAGATAAGGGTTTGTTAGACCTCATGTACAAGTCTACAGCTGCCATTGTGTCACCATCTGCTGCTTTGAGCTGAAAAACGCTTTTCTTCAAAAAAAACTTTTCTTAGGTCTATAATA</canonical>
            <polymorphic>ATCATACATTTGGATAGCCTTGTGTGGCATGCCAATTATGATATAGAGCTGCTCAGCCTCAGCGAATCTTCCATGCTCATCCAAGTCTTCAGCTTTTGACAAGTATGATGAAGTGGTGACATCCTTTCCGTGAAATTCTACGGAGAGACGGAACGCGTCAGTCCATTTTCCATTTTTTCCGTACATCATGATGGCGTCGTTGAATAGACCGGCTTCAACAAATAGTCGCTCAGCTCTCTGCAAAAATTCTAGTTTCTTGAAACCGTTTTTCCTTTCGTTCTCCTACCTCATAGTCTCCTACACTCGAATAATGGTCAGCGATTTCTCCATAGTAAGTTGTACGCACTTTTTGGTCTTGAATGTTCTCAACGATCTGAAATATAAAGCTAAAATCTTTGCGTTGGGTTCTTGCGCTTTTACCGATAACGCCTTTGGCCATTCTTTGGCTCGAATTGCAGACTCAACAGCTTTCTTCAAATCATTTGCTTCTGAAAATAATMAAATTCAAAATAATCAAACAAAAAAGATCTATCTTACCAACAAAATGGTTCACAGCGGCATCGTACTGCCCGATATACTCTAGATGTAAACCCCATTCATGCTCGAGATCGACCACTTTCTCAGGATATGCGAATCGAGCGAGCTGGAAAAATTAGATTGTGTTTCTCGAAATTAAACAAGAAAAAATAATTATTTACTTGTATAGCTTTTCCGTATGCATCCCCTTTTTTATAGTTGTCAACGGCATTGTCAAAGTCTTTCAGCTTCTCGTAAACTTCTCCAGCCTTATCAAACAGTTGTGCTTTTCCGAGAGCCTCCGCCACTTGTCTCAAAACATTTGCATCTTGAGAGAGCACACTATCATTCATCACAGCATTCAGTGCAGATAAGGGTTTGTTAGACCTCATGTACAAGTCTACAGCTGCCATTGTGTCACCATCTGCTGCTTTGAGCTGAAAAACGCTTTTCTTCAAAAAAAACTTTTCTTAGGTCTATAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTTGGTCTTGAATGTTCTC</pcr_primer_p1>
		<pcr_primer_p2>CATCTAGAGTATATCGGGCAGTA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CTTTTTGGTCTTGAATGTTCTCAACGATCTGAAATATAAAGCTAAAATCTTTGCGTTGGGTTCTTGCGCTTTTACCGATAACGCCTTTGGCCATTCTTTGGCTCGAATTGCAGACTCAACAGCTTTCTTCAAATCATTTGCTTCTGAAAATAATCAAATTCAAAATAATCAAACAAAAAAGATCTATCTTACCAACAAAATGGTTCACAGCGGCATCGTACTGCCCGATATACTCTAGATG</canonical_amplicon>
		<polymorphic_amplicon>CTTTTTGGTCTTGAATGTTCTCAACGATCTGAAATATAAAGCTAAAATCTTTGCGTTGGGTTCTTGCGCTTTTACCGATAACGCCTTTGGCCATTCTTTGGCTCGAATTGCAGACTCAACAGCTTTCTTCAAATCATTTGCTTCTGAAAATAATMAAATTCAAAATAATCAAACAAAAAAGATCTATCTTACCAACAAAATGGTTCACAGCGGCATCGTACTGCCCGATATACTCTAGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21721</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1095078</contig_pos>
        <strand>+</strand>
        <context>TAGCTTTTCC[A/G]TATGCATCCC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTCGAAATTAAACAAGAAAAAATAATTATTTACTTGTATAGCTTTTCC</left_flank>
        <right_flank>TATGCATCCCCTTTTTTATAGTTGTCAACGGCATTGTCAAAGTCTTTCAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAACAAATAGTCGCTCAGCTCTCTGCAAAAATTCTAGTTTCTTGAAACCGTTTTTCCTTTCGTTCTCCTACCTCATAGTCTCCTACACTCGAATAATGGTCAGCGATTTCTCCATAGTAAGTTGTACGCACTTTTTGGTCTTGAATGTTCTCAACGATCTGAAATATAAAGCTAAAATCTTTGCGTTGGGTTCTTGCGCTTTTACCGATAACGCCTTTGGCCATTCTTTGGCTCGAATTGCAGACTCAACAGCTTTCTTCAAATCATTTGCTTCTGAAAATAATCAAATTCAAAATAATCAAACAAAAAAGATCTATCTTACCAACAAAATGGTTCACAGCGGCATCGTACTGCCCGATATACTCTAGATGTAAACCCCATTCATGCTCGAGATCGACCACTTTCTCAGGATATGCGAATCGAGCGAGCTGGAAAAATTAGATTGTGTTTCTCGAAATTAAACAAGAAAAAATAATTATTTACTTGTATAGCTTTTCCGTATGCATCCCCTTTTTTATAGTTGTCAACGGCATTGTCAAAGTCTTTCAGCTTCTCGTAAACTTCTCCAGCCTTATCAAACAGTTGTGCTTTTCCGAGAGCCTCCGCCACTTGTCTCAAAACATTTGCATCTTGAGAGAGCACACTATCATTCATCACAGCATTCAGTGCAGATAAGGGTTTGTTAGACCTCATGTACAAGTCTACAGCTGCCATTGTGTCACCATCTGCTGCTTTGAGCTGAAAAACGCTTTTCTTCAAAAAAAACTTTTCTTAGGTCTATAATACCTCCGCCGCCTTCGAGTCCTGTCCTGTTTCGCTGAGAGCTCTCATATAATTATTTTTGAGACCATCCAAGTTTTGATAGTTGATCACTTTTGCTAGTTCCATTGCTTCATCCCATTTATGAAGAGATGTGTACATCCCAATTGCAGCATCCGCATCGTTCTGTTCCAGAAATATTCTCTCAGCGTCTTTGAATTTGCGTCCAAGGATTGACAT</canonical>
            <polymorphic>TCAACAAATAGTCGCTCAGCTCTCTGCAAAAATTCTAGTTTCTTGAAACCGTTTTTCCTTTCGTTCTCCTACCTCATAGTCTCCTACACTCGAATAATGGTCAGCGATTTCTCCATAGTAAGTTGTACGCACTTTTTGGTCTTGAATGTTCTCAACGATCTGAAATATAAAGCTAAAATCTTTGCGTTGGGTTCTTGCGCTTTTACCGATAACGCCTTTGGCCATTCTTTGGCTCGAATTGCAGACTCAACAGCTTTCTTCAAATCATTTGCTTCTGAAAATAATCAAATTCAAAATAATCAAACAAAAAAGATCTATCTTACCAACAAAATGGTTCACAGCGGCATCGTACTGCCCGATATACTCTAGATGTAAACCCCATTCATGCTCGAGATCGACCACTTTCTCAGGATATGCGAATCGAGCGAGCTGGAAAAATTAGATTGTGTTTCTCGAAATTAAACAAGAAAAAATAATTATTTACTTGTATAGCTTTTCCRTATGCATCCCCTTTTTTATAGTTGTCAACGGCATTGTCAAAGTCTTTCAGCTTCTCGTAAACTTCTCCAGCCTTATCAAACAGTTGTGCTTTTCCGAGAGCCTCCGCCACTTGTCTCAAAACATTTGCATCTTGAGAGAGCACACTATCATTCATCACAGCATTCAGTGCAGATAAGGGTTTGTTAGACCTCATGTACAAGTCTACAGCTGCCATTGTGTCACCATCTGCTGCTTTGAGCTGAAAAACGCTTTTCTTCAAAAAAAACTTTTCTTAGGTCTATAATACCTCCGCCGCCTTCGAGTCCTGTCCTGTTTCGCTGAGAGCTCTCATATAATTATTTTTGAGACCATCCAAGTTTTGATAGTTGATCACTTTTGCTAGTTCCATTGCTTCATCCCATTTATGAAGAGATGTGTACATCCCAATTGCAGCATCCGCATCGTTCTGTTCCAGAAATATTCTCTCAGCGTCTTTGAATTTGCGTCCAAGGATTGACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTTTCTCGAAATTAAACAAGA</pcr_primer_p1>
		<pcr_primer_p2>ATGAGGTCTAACAAACCCTTATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTGTTTCTCGAAATTAAACAAGAAAAAATAATTATTTACTTGTATAGCTTTTCCGTATGCATCCCCTTTTTTATAGTTGTCAACGGCATTGTCAAAGTCTTTCAGCTTCTCGTAAACTTCTCCAGCCTTATCAAACAGTTGTGCTTTTCCGAGAGCCTCCGCCACTTGTCTCAAAACATTTGCATCTTGAGAGAGCACACTATCATTCATCACAGCATTCAGTGCAGATAAGGGTTTGTTAGACCTCAT</canonical_amplicon>
		<polymorphic_amplicon>GTGTTTCTCGAAATTAAACAAGAAAAAATAATTATTTACTTGTATAGCTTTTCCRTATGCATCCCCTTTTTTATAGTTGTCAACGGCATTGTCAAAGTCTTTCAGCTTCTCGTAAACTTCTCCAGCCTTATCAAACAGTTGTGCTTTTCCGAGAGCCTCCGCCACTTGTCTCAAAACATTTGCATCTTGAGAGAGCACACTATCATTCATCACAGCATTCAGTGCAGATAAGGGTTTGTTAGACCTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21722</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1095183</contig_pos>
        <strand>+</strand>
        <context>CGAGAGCCTC[C/T]GCCACTTGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGTAAACTTCTCCAGCCTTATCAAACAGTTGTGCTTTTCCGAGAGCCTC</left_flank>
        <right_flank>GCCACTTGTCTCAAAACATTTGCATCTTGAGAGAGCACACTATCATTCAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTCTCCATAGTAAGTTGTACGCACTTTTTGGTCTTGAATGTTCTCAACGATCTGAAATATAAAGCTAAAATCTTTGCGTTGGGTTCTTGCGCTTTTACCGATAACGCCTTTGGCCATTCTTTGGCTCGAATTGCAGACTCAACAGCTTTCTTCAAATCATTTGCTTCTGAAAATAATCAAATTCAAAATAATCAAACAAAAAAGATCTATCTTACCAACAAAATGGTTCACAGCGGCATCGTACTGCCCGATATACTCTAGATGTAAACCCCATTCATGCTCGAGATCGACCACTTTCTCAGGATATGCGAATCGAGCGAGCTGGAAAAATTAGATTGTGTTTCTCGAAATTAAACAAGAAAAAATAATTATTTACTTGTATAGCTTTTCCGTATGCATCCCCTTTTTTATAGTTGTCAACGGCATTGTCAAAGTCTTTCAGCTTCTCGTAAACTTCTCCAGCCTTATCAAACAGTTGTGCTTTTCCGAGAGCCTCCGCCACTTGTCTCAAAACATTTGCATCTTGAGAGAGCACACTATCATTCATCACAGCATTCAGTGCAGATAAGGGTTTGTTAGACCTCATGTACAAGTCTACAGCTGCCATTGTGTCACCATCTGCTGCTTTGAGCTGAAAAACGCTTTTCTTCAAAAAAAACTTTTCTTAGGTCTATAATACCTCCGCCGCCTTCGAGTCCTGTCCTGTTTCGCTGAGAGCTCTCATATAATTATTTTTGAGACCATCCAAGTTTTGATAGTTGATCACTTTTGCTAGTTCCATTGCTTCATCCCATTTATGAAGAGATGTGTACATCCCAATTGCAGCATCCGCATCGTTCTGTTCCAGAAATATTCTCTCAGCGTCTTTGAATTTGCGTCCAAGGATTGACATCATAGCACGAACCTTGTAATAGTGAGTTCCATCGCCACCGATAGTGATGGCAGCTTCGTCAGCAATCTCTATTATATCCTGAAATTTGGAATTTGTCGAAATAGT</canonical>
            <polymorphic>GATTTCTCCATAGTAAGTTGTACGCACTTTTTGGTCTTGAATGTTCTCAACGATCTGAAATATAAAGCTAAAATCTTTGCGTTGGGTTCTTGCGCTTTTACCGATAACGCCTTTGGCCATTCTTTGGCTCGAATTGCAGACTCAACAGCTTTCTTCAAATCATTTGCTTCTGAAAATAATCAAATTCAAAATAATCAAACAAAAAAGATCTATCTTACCAACAAAATGGTTCACAGCGGCATCGTACTGCCCGATATACTCTAGATGTAAACCCCATTCATGCTCGAGATCGACCACTTTCTCAGGATATGCGAATCGAGCGAGCTGGAAAAATTAGATTGTGTTTCTCGAAATTAAACAAGAAAAAATAATTATTTACTTGTATAGCTTTTCCGTATGCATCCCCTTTTTTATAGTTGTCAACGGCATTGTCAAAGTCTTTCAGCTTCTCGTAAACTTCTCCAGCCTTATCAAACAGTTGTGCTTTTCCGAGAGCCTCYGCCACTTGTCTCAAAACATTTGCATCTTGAGAGAGCACACTATCATTCATCACAGCATTCAGTGCAGATAAGGGTTTGTTAGACCTCATGTACAAGTCTACAGCTGCCATTGTGTCACCATCTGCTGCTTTGAGCTGAAAAACGCTTTTCTTCAAAAAAAACTTTTCTTAGGTCTATAATACCTCCGCCGCCTTCGAGTCCTGTCCTGTTTCGCTGAGAGCTCTCATATAATTATTTTTGAGACCATCCAAGTTTTGATAGTTGATCACTTTTGCTAGTTCCATTGCTTCATCCCATTTATGAAGAGATGTGTACATCCCAATTGCAGCATCCGCATCGTTCTGTTCCAGAAATATTCTCTCAGCGTCTTTGAATTTGCGTCCAAGGATTGACATCATAGCACGAACCTTGTAATAGTGAGTTCCATCGCCACCGATAGTGATGGCAGCTTCGTCAGCAATCTCTATTATATCCTGAAATTTGGAATTTGTCGAAATAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>499 186 168 144 3</canonical_bands>
                <polymorphic_bands>685 168 144 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGTTTCTCGAAATTAAACAAGA</pcr_primer_p1>
		<pcr_primer_p2>ATGAGGTCTAACAAACCCTTATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTGTTTCTCGAAATTAAACAAGAAAAAATAATTATTTACTTGTATAGCTTTTCCGTATGCATCCCCTTTTTTATAGTTGTCAACGGCATTGTCAAAGTCTTTCAGCTTCTCGTAAACTTCTCCAGCCTTATCAAACAGTTGTGCTTTTCCGAGAGCCTCCGCCACTTGTCTCAAAACATTTGCATCTTGAGAGAGCACACTATCATTCATCACAGCATTCAGTGCAGATAAGGGTTTGTTAGACCTCAT</canonical_amplicon>
		<polymorphic_amplicon>GTGTTTCTCGAAATTAAACAAGAAAAAATAATTATTTACTTGTATAGCTTTTCCGTATGCATCCCCTTTTTTATAGTTGTCAACGGCATTGTCAAAGTCTTTCAGCTTCTCGTAAACTTCTCCAGCCTTATCAAACAGTTGTGCTTTTCCGAGAGCCTCYGCCACTTGTCTCAAAACATTTGCATCTTGAGAGAGCACACTATCATTCATCACAGCATTCAGTGCAGATAAGGGTTTGTTAGACCTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21723</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1095341</contig_pos>
        <strand>+</strand>
        <context>TTCTTCYAAA[A/C]AAACTTTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATTGTGTCACCATCTGCTGCTTTGAGCTGAAAAACGCTTTTCTTCAAAA</left_flank>
        <right_flank>AAACTTTTCTTAGGTCTATAATACCTCCGCCGCCTTCGAGTCCTGTCCTG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCATTTGCTTCTGAAAATAATCAAATTCAAAATAATCAAACAAAAAAGATCTATCTTACCAACAAAATGGTTCACAGCGGCATCGTACTGCCCGATATACTCTAGATGTAAACCCCATTCATGCTCGAGATCGACCACTTTCTCAGGATATGCGAATCGAGCGAGCTGGAAAAATTAGATTGTGTTTCTCGAAATTAAACAAGAAAAAATAATTATTTACTTGTATAGCTTTTCCGTATGCATCCCCTTTTTTATAGTTGTCAACGGCATTGTCAAAGTCTTTCAGCTTCTCGTAAACTTCTCCAGCCTTATCAAACAGTTGTGCTTTTCCGAGAGCCTCCGCCACTTGTCTCAAAACATTTGCATCTTGAGAGAGCACACTATCATTCATCACAGCATTCAGTGCAGATAAGGGTTTGTTAGACCTCATGTACAAGTCTACAGCTGCCATTGTGTCACCATCTGCTGCTTTGAGCTGAAAAACGCTTTTCTTCAAAAAAAACTTTTCTTAGGTCTATAATACCTCCGCCGCCTTCGAGTCCTGTCCTGTTTCGCTGAGAGCTCTCATATAATTATTTTTGAGACCATCCAAGTTTTGATAGTTGATCACTTTTGCTAGTTCCATTGCTTCATCCCATTTATGAAGAGATGTGTACATCCCAATTGCAGCATCCGCATCGTTCTGTTCCAGAAATATTCTCTCAGCGTCTTTGAATTTGCGTCCAAGGATTGACATCATAGCACGAACCTTGTAATAGTGAGTTCCATCGCCACCGATAGTGATGGCAGCTTCGTCAGCAATCTCTATTATATCCTGAAATTTGGAATTTGTCGAAATAGTGAAGGTTAGTGCTTACATGAAGTTTCTTCGCCTTTGCAATGTTTCCTATTGCCGCGTAGCACCGTTGAGCTACAAAAAGGTTTCCATGCTCTAGTGCCATCTCAGCTACTCTAGTCCACATTGCGTAAGCATCTGAAGATCCTGTATTGGATTCCAAA</canonical>
            <polymorphic>ATCATTTGCTTCTGAAAATAATCAAATTCAAAATAATCAAACAAAAAAGATCTATCTTACCAACAAAATGGTTCACAGCGGCATCGTACTGCCCGATATACTCTAGATGTAAACCCCATTCATGCTCGAGATCGACCACTTTCTCAGGATATGCGAATCGAGCGAGCTGGAAAAATTAGATTGTGTTTCTCGAAATTAAACAAGAAAAAATAATTATTTACTTGTATAGCTTTTCCGTATGCATCCCCTTTTTTATAGTTGTCAACGGCATTGTCAAAGTCTTTCAGCTTCTCGTAAACTTCTCCAGCCTTATCAAACAGTTGTGCTTTTCCGAGAGCCTCCGCCACTTGTCTCAAAACATTTGCATCTTGAGAGAGCACACTATCATTCATCACAGCATTCAGTGCAGATAAGGGTTTGTTAGACCTCATGTACAAGTCTACAGCTGCCATTGTGTCACCATCTGCTGCTTTGAGCTGAAAAACGCTTTTCTTCAAAAMAAACTTTTCTTAGGTCTATAATACCTCCGCCGCCTTCGAGTCCTGTCCTGTTTCGCTGAGAGCTCTCATATAATTATTTTTGAGACCATCCAAGTTTTGATAGTTGATCACTTTTGCTAGTTCCATTGCTTCATCCCATTTATGAAGAGATGTGTACATCCCAATTGCAGCATCCGCATCGTTCTGTTCCAGAAATATTCTCTCAGCGTCTTTGAATTTGCGTCCAAGGATTGACATCATAGCACGAACCTTGTAATAGTGAGTTCCATCGCCACCGATAGTGATGGCAGCTTCGTCAGCAATCTCTATTATATCCTGAAATTTGGAATTTGTCGAAATAGTGAAGGTTAGTGCTTACATGAAGTTTCTTCGCCTTTGCAATGTTTCCTATTGCCGCGTAGCACCGTTGAGCTACAAAAAGGTTTCCATGCTCTAGTGCCATCTCAGCTACTCTAGTCCACATTGCGTAAGCATCTGAAGATCCTGTATTGGATTCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAGAGCACACTATCATTCATC</pcr_primer_p1>
		<pcr_primer_p2>AGCAAAAGTGATCAACTATCAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAGAGAGCACACTATCATTCATCACAGCATTCAGTGCAGATAAGGGTTTGTTAGACCTCATGTACAAGTCTACAGCTGCCATTGTGTCACCATCTGCTGCTTTGAGCTGAAAAACGCTTTTCTTCAAAAAAAACTTTTCTTAGGTCTATAATACCTCCGCCGCCTTCGAGTCCTGTCCTGTTTCGCTGAGAGCTCTCATATAATTATTTTTGAGACCATCCAAGTTTTGATAGTTGATCACTTTTGCT</canonical_amplicon>
		<polymorphic_amplicon>GAGAGAGCACACTATCATTCATCACAGCATTCAGTGCAGATAAGGGTTTGTTAGACCTCATGTACAAGTCTACAGCTGCCATTGTGTCACCATCTGCTGCTTTGAGCTGAAAAACGCTTTTCTTCAAAAMAAACTTTTCTTAGGTCTATAATACCTCCGCCGCCTTCGAGTCCTGTCCTGTTTCGCTGAGAGCTCTCATATAATTATTTTTGAGACCATCCAAGTTTTGATAGTTGATCACTTTTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21724</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1095375</contig_pos>
        <strand></strand>
        <context>CCTCCGCCGC[C/T]TTCGAGTCCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGCTTTTCTTCAAAAAAAACTTTTCTTAGGTCTATAATACCTCCGCCGC</left_flank>
        <right_flank>TTCGAGTCCTGTCCTGTTTCGCTGAGAGCTCTCATATAATTATTTTTGAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCAAACAAAAAAGATCTATCTTACCAACAAAATGGTTCACAGCGGCATCGTACTGCCCGATATACTCTAGATGTAAACCCCATTCATGCTCGAGATCGACCACTTTCTCAGGATATGCGAATCGAGCGAGCTGGAAAAATTAGATTGTGTTTCTCGAAATTAAACAAGAAAAAATAATTATTTACTTGTATAGCTTTTCCGTATGCATCCCCTTTTTTATAGTTGTCAACGGCATTGTCAAAGTCTTTCAGCTTCTCGTAAACTTCTCCAGCCTTATCAAACAGTTGTGCTTTTCCGAGAGCCTCCGCCACTTGTCTCAAAACATTTGCATCTTGAGAGAGCACACTATCATTCATCACAGCATTCAGTGCAGATAAGGGTTTGTTAGACCTCATGTACAAGTCTACAGCTGCCATTGTGTCACCATCTGCTGCTTTGAGCTGAAAAACGCTTTTCTTCAAAAAAAACTTTTCTTAGGTCTATAATACCTCCGCCGCCTTCGAGTCCTGTCCTGTTTCGCTGAGAGCTCTCATATAATTATTTTTGAGACCATCCAAGTTTTGATAGTTGATCACTTTTGCTAGTTCCATTGCTTCATCCCATTTATGAAGAGATGTGTACATCCCAATTGCAGCATCCGCATCGTTCTGTTCCAGAAATATTCTCTCAGCGTCTTTGAATTTGCGTCCAAGGATTGACATCATAGCACGAACCTTGTAATAGTGAGTTCCATCGCCACCGATAGTGATGGCAGCTTCGTCAGCAATCTCTATTATATCCTGAAATTTGGAATTTGTCGAAATAGTGAAGGTTAGTGCTTACATGAAGTTTCTTCGCCTTTGCAATGTTTCCTATTGCCGCGTAGCACCGTTGAGCTACAAAAAGGTTTCCATGCTCTAGTGCCATCTCAGCTACTCTAGTCCACATTGCGTAAGCATCTGAAGATCCTGTATTGGATTCCAAAAACGCAACAGCTCTCTCGAAATCTCGTTTTTCTA</canonical>
            <polymorphic>AATCAAACAAAAAAGATCTATCTTACCAACAAAATGGTTCACAGCGGCATCGTACTGCCCGATATACTCTAGATGTAAACCCCATTCATGCTCGAGATCGACCACTTTCTCAGGATATGCGAATCGAGCGAGCTGGAAAAATTAGATTGTGTTTCTCGAAATTAAACAAGAAAAAATAATTATTTACTTGTATAGCTTTTCCGTATGCATCCCCTTTTTTATAGTTGTCAACGGCATTGTCAAAGTCTTTCAGCTTCTCGTAAACTTCTCCAGCCTTATCAAACAGTTGTGCTTTTCCGAGAGCCTCCGCCACTTGTCTCAAAACATTTGCATCTTGAGAGAGCACACTATCATTCATCACAGCATTCAGTGCAGATAAGGGTTTGTTAGACCTCATGTACAAGTCTACAGCTGCCATTGTGTCACCATCTGCTGCTTTGAGCTGAAAAACGCTTTTCTTCAAAAAAAACTTTTCTTAGGTCTATAATACCTCCGCCGCYTTCGAGTCCTGTCCTGTTTCGCTGAGAGCTCTCATATAATTATTTTTGAGACCATCCAAGTTTTGATAGTTGATCACTTTTGCTAGTTCCATTGCTTCATCCCATTTATGAAGAGATGTGTACATCCCAATTGCAGCATCCGCATCGTTCTGTTCCAGAAATATTCTCTCAGCGTCTTTGAATTTGCGTCCAAGGATTGACATCATAGCACGAACCTTGTAATAGTGAGTTCCATCGCCACCGATAGTGATGGCAGCTTCGTCAGCAATCTCTATTATATCCTGAAATTTGGAATTTGTCGAAATAGTGAAGGTTAGTGCTTACATGAAGTTTCTTCGCCTTTGCAATGTTTCCTATTGCCGCGTAGCACCGTTGAGCTACAAAAAGGTTTCCATGCTCTAGTGCCATCTCAGCTACTCTAGTCCACATTGCGTAAGCATCTGAAGATCCTGTATTGGATTCCAAAAACGCAACAGCTCTCTCGAAATCTCGTTTTTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAGAGCACACTATCATTCATC</pcr_primer_p1>
		<pcr_primer_p2>AGCAAAAGTGATCAACTATCAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAGAGAGCACACTATCATTCATCACAGCATTCAGTGCAGATAAGGGTTTGTTAGACCTCATGTACAAGTCTACAGCTGCCATTGTGTCACCATCTGCTGCTTTGAGCTGAAAAACGCTTTTCTTCAAAAAAAACTTTTCTTAGGTCTATAATACCTCCGCCGCCTTCGAGTCCTGTCCTGTTTCGCTGAGAGCTCTCATATAATTATTTTTGAGACCATCCAAGTTTTGATAGTTGATCACTTTTGCT</canonical_amplicon>
		<polymorphic_amplicon>GAGAGAGCACACTATCATTCATCACAGCATTCAGTGCAGATAAGGGTTTGTTAGACCTCATGTACAAGTCTACAGCTGCCATTGTGTCACCATCTGCTGCTTTGAGCTGAAAAACGCTTTTCTTCAAAAAAAACTTTTCTTAGGTCTATAATACCTCCGCCGCYTTCGAGTCCTGTCCTGTTTCGCTGAGAGCTCTCATATAATTATTTTTGAGACCATCCAAGTTTTGATAGTTGATCACTTTTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21725</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1097392</contig_pos>
        <strand>+</strand>
        <context>TGTAGGACAG[A/T]ACACGTCTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCATTGTAGTCGAATTGCTGTTGGACGACTCCGTTCTCTGTGTAGGACAG</left_flank>
        <right_flank>ACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATTAAAGCTCAGAAAATTTTTGGCAACGTTTCATTTTTTGAAGTTTTCAGTTACCTTGTGAATTGGGAAAATTGCAGATTTTCAAAAACTCTCTTAGTGAGATGCAACTAACCGCGTAAATAGTGCTGCCATCTTGTTTCCAGCCTAGGGCACCTATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAATCGACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACGACTCCGTTCTCTGTGTAGGACAGTACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAGATTATATGGAGGCCATTGGAGTGTGCAAATCTTGGATTGAGTTTTACTGCTGAAGTTGTACAGAATGATGGATCCATCTTGATGTGCAGAGACAAAGGATGTCTTTTTTGGGCTGAAAAATAGTTTTTCCGGGGCATTGAGTATAATTCCGCCTACTGTGTCTGAATGCTGACGACTGTTTCGTCAGTCTTGAAGAGAGAACTGCATTTGTTGGTTTTGATAAGCCCGATTCTGACCTGAAATTCTCAGTTTATTTTCAATTTCATTTCAATTGATACGGTACCTTTCCATCTAACTGTCCTACCAGTATTTTATCATCGAACGGCCAACTCAAACAAGTCACAGCCGACGGTTGCACAAATTTGTTGACAATCACTTTCTTTTCGTTCCTGCATATAATTATAGTATGAGTCAATTGGGTACGTTCCCTTTACACAATGAAAAAAAGAG</canonical>
            <polymorphic>AAAAATTAAAGCTCAGAAAATTTTTGGCAACGTTTCATTTTTTGAAGTTTTCAGTTACCTTGTGAATTGGGAAAATTGCAGATTTTCAAAAACTCTCTTAGTGAGATGCAACTAACCGCGTAAATAGTGCTGCCATCTTGTTTCCAGCCTAGGGCACCTATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAATCGACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACGACTCCGTTCTCTGTGTAGGACAGWACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAGATTATATGGAGGCCATTGGAGTGTGCAAATCTTGGATTGAGTTTTACTGCTGAAGTTGTACAGAATGATGGATCCATCTTGATGTGCAGAGACAAAGGATGTCTTTTTTGGGCTGAAAAATAGTTTTTCCGGGGCATTGAGTATAATTCCGCCTACTGTGTCTGAATGCTGACGACTGTTTCGTCAGTCTTGAAGAGAGAACTGCATTTGTTGGTTTTGATAAGCCCGATTCTGACCTGAAATTCTCAGTTTATTTTCAATTTCATTTCAATTGATACGGTACCTTTCCATCTAACTGTCCTACCAGTATTTTATCATCGAACGGCCAACTCAAACAAGTCACAGCCGACGGTTGCACAAATTTGTTGACAATCACTTTCTTTTCGTTCCTGCATATAATTATAGTATGAGTCAATTGGGTACGTTCCCTTTACACAATGAAAAAAAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 222 140 109 29</canonical_bands>
                <polymorphic_bands>609 222 140 29</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>498 175 102 99 54 34 20 18</canonical_bands>
                <polymorphic_bands>532 175 102 99 54 20 18</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 416 83</canonical_bands>
                <polymorphic_bands>917 83</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>498 393 109</canonical_bands>
                <polymorphic_bands>607 393</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTATAACTAGCCACGACCAC</pcr_primer_p1>
		<pcr_primer_p2>GATCCATCATTCTGTACAACTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAATCGACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACGACTCCGTTCTCTGTGTAGGACAGTACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAGATTATATGGAGGCCATTGGAGTGTGCAAATCTTGGATTGAGTTTTACTGCTGAAGTTGTACAGAATGATGGATC</canonical_amplicon>
		<polymorphic_amplicon>CTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAATCGACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACGACTCCGTTCTCTGTGTAGGACAGWACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAGATTATATGGAGGCCATTGGAGTGTGCAAATCTTGGATTGAGTTTTACTGCTGAAGTTGTACAGAATGATGGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21726</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1097370</contig_pos>
        <strand>+</strand>
        <context>TGTTGGACRA[C/G]TCCGTTCTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACGA</left_flank>
        <right_flank>TCCGTTCTCTGTGTAGGACAGTACACGTCTGTCTGACGTGGCCACAACGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGATCTCTTGTGTTTCTTGAAAAATTAAAGCTCAGAAAATTTTTGGCAACGTTTCATTTTTTGAAGTTTTCAGTTACCTTGTGAATTGGGAAAATTGCAGATTTTCAAAAACTCTCTTAGTGAGATGCAACTAACCGCGTAAATAGTGCTGCCATCTTGTTTCCAGCCTAGGGCACCTATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAATCGACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACGACTCCGTTCTCTGTGTAGGACAGTACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAGATTATATGGAGGCCATTGGAGTGTGCAAATCTTGGATTGAGTTTTACTGCTGAAGTTGTACAGAATGATGGATCCATCTTGATGTGCAGAGACAAAGGATGTCTTTTTTGGGCTGAAAAATAGTTTTTCCGGGGCATTGAGTATAATTCCGCCTACTGTGTCTGAATGCTGACGACTGTTTCGTCAGTCTTGAAGAGAGAACTGCATTTGTTGGTTTTGATAAGCCCGATTCTGACCTGAAATTCTCAGTTTATTTTCAATTTCATTTCAATTGATACGGTACCTTTCCATCTAACTGTCCTACCAGTATTTTATCATCGAACGGCCAACTCAAACAAGTCACAGCCGACGGTTGCACAAATTTGTTGACAATCACTTTCTTTTCGTTCCTGCATATAATTATAGTATGAGTCAATTGGGTACGTTCC</canonical>
            <polymorphic>AATTGATCTCTTGTGTTTCTTGAAAAATTAAAGCTCAGAAAATTTTTGGCAACGTTTCATTTTTTGAAGTTTTCAGTTACCTTGTGAATTGGGAAAATTGCAGATTTTCAAAAACTCTCTTAGTGAGATGCAACTAACCGCGTAAATAGTGCTGCCATCTTGTTTCCAGCCTAGGGCACCTATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAATCGACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACGASTCCGTTCTCTGTGTAGGACAGTACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAGATTATATGGAGGCCATTGGAGTGTGCAAATCTTGGATTGAGTTTTACTGCTGAAGTTGTACAGAATGATGGATCCATCTTGATGTGCAGAGACAAAGGATGTCTTTTTTGGGCTGAAAAATAGTTTTTCCGGGGCATTGAGTATAATTCCGCCTACTGTGTCTGAATGCTGACGACTGTTTCGTCAGTCTTGAAGAGAGAACTGCATTTGTTGGTTTTGATAAGCCCGATTCTGACCTGAAATTCTCAGTTTATTTTCAATTTCATTTCAATTGATACGGTACCTTTCCATCTAACTGTCCTACCAGTATTTTATCATCGAACGGCCAACTCAAACAAGTCACAGCCGACGGTTGCACAAATTTGTTGACAATCACTTTCTTTTCGTTCCTGCATATAATTATAGTATGAGTCAATTGGGTACGTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTATAACTAGCCACGACCAC</pcr_primer_p1>
		<pcr_primer_p2>GATCCATCATTCTGTACAACTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAATCGACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACGACTCCGTTCTCTGTGTAGGACAGTACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAGATTATATGGAGGCCATTGGAGTGTGCAAATCTTGGATTGAGTTTTACTGCTGAAGTTGTACAGAATGATGGATC</canonical_amplicon>
		<polymorphic_amplicon>CTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAATCGACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACGASTCCGTTCTCTGTGTAGGACAGTACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAGATTATATGGAGGCCATTGGAGTGTGCAAATCTTGGATTGAGTTTTACTGCTGAAGTTGTACAGAATGATGGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21727</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1097368</contig_pos>
        <strand>+</strand>
        <context>GCTGTTGGAC[A/G]ASTCCGTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGAC</left_flank>
        <right_flank>ACTCCGTTCTCTGTGTAGGACAGTACACGTCTGTCTGACGTGGCCACAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAATTGATCTCTTGTGTTTCTTGAAAAATTAAAGCTCAGAAAATTTTTGGCAACGTTTCATTTTTTGAAGTTTTCAGTTACCTTGTGAATTGGGAAAATTGCAGATTTTCAAAAACTCTCTTAGTGAGATGCAACTAACCGCGTAAATAGTGCTGCCATCTTGTTTCCAGCCTAGGGCACCTATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAATCGACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACGACTCCGTTCTCTGTGTAGGACAGTACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAGATTATATGGAGGCCATTGGAGTGTGCAAATCTTGGATTGAGTTTTACTGCTGAAGTTGTACAGAATGATGGATCCATCTTGATGTGCAGAGACAAAGGATGTCTTTTTTGGGCTGAAAAATAGTTTTTCCGGGGCATTGAGTATAATTCCGCCTACTGTGTCTGAATGCTGACGACTGTTTCGTCAGTCTTGAAGAGAGAACTGCATTTGTTGGTTTTGATAAGCCCGATTCTGACCTGAAATTCTCAGTTTATTTTCAATTTCATTTCAATTGATACGGTACCTTTCCATCTAACTGTCCTACCAGTATTTTATCATCGAACGGCCAACTCAAACAAGTCACAGCCGACGGTTGCACAAATTTGTTGACAATCACTTTCTTTTCGTTCCTGCATATAATTATAGTATGAGTCAATTGGGTACGTT</canonical>
            <polymorphic>GGAATTGATCTCTTGTGTTTCTTGAAAAATTAAAGCTCAGAAAATTTTTGGCAACGTTTCATTTTTTGAAGTTTTCAGTTACCTTGTGAATTGGGAAAATTGCAGATTTTCAAAAACTCTCTTAGTGAGATGCAACTAACCGCGTAAATAGTGCTGCCATCTTGTTTCCAGCCTAGGGCACCTATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAATCGACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACRACTCCGTTCTCTGTGTAGGACAGTACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAGATTATATGGAGGCCATTGGAGTGTGCAAATCTTGGATTGAGTTTTACTGCTGAAGTTGTACAGAATGATGGATCCATCTTGATGTGCAGAGACAAAGGATGTCTTTTTTGGGCTGAAAAATAGTTTTTCCGGGGCATTGAGTATAATTCCGCCTACTGTGTCTGAATGCTGACGACTGTTTCGTCAGTCTTGAAGAGAGAACTGCATTTGTTGGTTTTGATAAGCCCGATTCTGACCTGAAATTCTCAGTTTATTTTCAATTTCATTTCAATTGATACGGTACCTTTCCATCTAACTGTCCTACCAGTATTTTATCATCGAACGGCCAACTCAAACAAGTCACAGCCGACGGTTGCACAAATTTGTTGACAATCACTTTCTTTTCGTTCCTGCATATAATTATAGTATGAGTCAATTGGGTACGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>335 302 181 165 17</canonical_bands>
                <polymorphic_bands>467 335 181 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTATAACTAGCCACGACCAC</pcr_primer_p1>
		<pcr_primer_p2>GATCCATCATTCTGTACAACTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAATCGACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACGACTCCGTTCTCTGTGTAGGACAGTACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAGATTATATGGAGGCCATTGGAGTGTGCAAATCTTGGATTGAGTTTTACTGCTGAAGTTGTACAGAATGATGGATC</canonical_amplicon>
		<polymorphic_amplicon>CTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAATCGACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACRACTCCGTTCTCTGTGTAGGACAGTACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAGATTATATGGAGGCCATTGGAGTGTGCAAATCTTGGATTGAGTTTTACTGCTGAAGTTGTACAGAATGATGGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21728</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1097258</contig_pos>
        <strand>+</strand>
        <context>GAAAACAATC[C/T]TTTCTCACCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATC</left_flank>
        <right_flank>TTTCTCACCTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACATGGGATGGGGCGACGTAGGTGGTTTCAAATCGAGATTTCAGCATACCACGACGTAGACAGCAATCAACAGCAAAGACTCCTCCACAGACAGTGCCCTGTAATCAGAGGAATTGATCTCTTGTGTTTCTTGAAAAATTAAAGCTCAGAAAATTTTTGGCAACGTTTCATTTTTTGAAGTTTTCAGTTACCTTGTGAATTGGGAAAATTGCAGATTTTCAAAAACTCTCTTAGTGAGATGCAACTAACCGCGTAAATAGTGCTGCCATCTTGTTTCCAGCCTAGGGCACCTATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAATCGACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACGACTCCGTTCTCTGTGTAGGACAGTACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAGATTATATGGAGGCCATTGGAGTGTGCAAATCTTGGATTGAGTTTTACTGCTGAAGTTGTACAGAATGATGGATCCATCTTGATGTGCAGAGACAAAGGATGTCTTTTTTGGGCTGAAAAATAGTTTTTCCGGGGCATTGAGTATAATTCCGCCTACTGTGTCTGAATGCTGACGACTGTTTCGTCAGTCTTGAAGAGAGAACTGCATTTGTTGGTTTTGATAAGCCCGATTCTGACCTGAAATTCTCAGTTTATTTTCAATTTCATTTCAATTGATACGGTACCTTTCCATCTAACTGTCCTACCAGTATTTTATC</canonical>
            <polymorphic>CACATGGGATGGGGCGACGTAGGTGGTTTCAAATCGAGATTTCAGCATACCACGACGTAGACAGCAATCAACAGCAAAGACTCCTCCACAGACAGTGCCCTGTAATCAGAGGAATTGATCTCTTGTGTTTCTTGAAAAATTAAAGCTCAGAAAATTTTTGGCAACGTTTCATTTTTTGAAGTTTTCAGTTACCTTGTGAATTGGGAAAATTGCAGATTTTCAAAAACTCTCTTAGTGAGATGCAACTAACCGCGTAAATAGTGCTGCCATCTTGTTTCCAGCCTAGGGCACCTATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCYTTTCTCACCTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAATCGACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACGACTCCGTTCTCTGTGTAGGACAGTACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAGATTATATGGAGGCCATTGGAGTGTGCAAATCTTGGATTGAGTTTTACTGCTGAAGTTGTACAGAATGATGGATCCATCTTGATGTGCAGAGACAAAGGATGTCTTTTTTGGGCTGAAAAATAGTTTTTCCGGGGCATTGAGTATAATTCCGCCTACTGTGTCTGAATGCTGACGACTGTTTCGTCAGTCTTGAAGAGAGAACTGCATTTGTTGGTTTTGATAAGCCCGATTCTGACCTGAAATTCTCAGTTTATTTTCAATTTCATTTCAATTGATACGGTACCTTTCCATCTAACTGTCCTACCAGTATTTTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGCATTCTGAATTTCCAAAG</pcr_primer_p1>
		<pcr_primer_p2>ATTGTGTGTGACCCTACTGC</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>TAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAAT</canonical_amplicon>
		<polymorphic_amplicon>TAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCYTTTCTCACCTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21729</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1097218</contig_pos>
        <strand>+</strand>
        <context>AGAAAATCGC[A/T]AAGTCACCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGC</left_flank>
        <right_flank>AAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAATTTGTTCTCGACTCATTTGTTACATCACGAAGAATCACATGGGATGGGGCGACGTAGGTGGTTTCAAATCGAGATTTCAGCATACCACGACGTAGACAGCAATCAACAGCAAAGACTCCTCCACAGACAGTGCCCTGTAATCAGAGGAATTGATCTCTTGTGTTTCTTGAAAAATTAAAGCTCAGAAAATTTTTGGCAACGTTTCATTTTTTGAAGTTTTCAGTTACCTTGTGAATTGGGAAAATTGCAGATTTTCAAAAACTCTCTTAGTGAGATGCAACTAACCGCGTAAATAGTGCTGCCATCTTGTTTCCAGCCTAGGGCACCTATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAATCGACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACGACTCCGTTCTCTGTGTAGGACAGTACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAGATTATATGGAGGCCATTGGAGTGTGCAAATCTTGGATTGAGTTTTACTGCTGAAGTTGTACAGAATGATGGATCCATCTTGATGTGCAGAGACAAAGGATGTCTTTTTTGGGCTGAAAAATAGTTTTTCCGGGGCATTGAGTATAATTCCGCCTACTGTGTCTGAATGCTGACGACTGTTTCGTCAGTCTTGAAGAGAGAACTGCATTTGTTGGTTTTGATAAGCCCGATTCTGACCTGAAATTCTCAGTTTATTTTCAATTTCATTTCAATTGAT</canonical>
            <polymorphic>TCAAATTTGTTCTCGACTCATTTGTTACATCACGAAGAATCACATGGGATGGGGCGACGTAGGTGGTTTCAAATCGAGATTTCAGCATACCACGACGTAGACAGCAATCAACAGCAAAGACTCCTCCACAGACAGTGCCCTGTAATCAGAGGAATTGATCTCTTGTGTTTCTTGAAAAATTAAAGCTCAGAAAATTTTTGGCAACGTTTCATTTTTTGAAGTTTTCAGTTACCTTGTGAATTGGGAAAATTGCAGATTTTCAAAAACTCTCTTAGTGAGATGCAACTAACCGCGTAAATAGTGCTGCCATCTTGTTTCCAGCCTAGGGCACCTATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCWAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAATCGACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACGACTCCGTTCTCTGTGTAGGACAGTACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAGATTATATGGAGGCCATTGGAGTGTGCAAATCTTGGATTGAGTTTTACTGCTGAAGTTGTACAGAATGATGGATCCATCTTGATGTGCAGAGACAAAGGATGTCTTTTTTGGGCTGAAAAATAGTTTTTCCGGGGCATTGAGTATAATTCCGCCTACTGTGTCTGAATGCTGACGACTGTTTCGTCAGTCTTGAAGAGAGAACTGCATTTGTTGGTTTTGATAAGCCCGATTCTGACCTGAAATTCTCAGTTTATTTTCAATTTCATTTCAATTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCGAGTAAGCATTCTGAATTT</pcr_primer_p1>
		<pcr_primer_p2>GTCGTGGCTAGTTATAATAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGAC</canonical_amplicon>
		<polymorphic_amplicon>TATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCWAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21730</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1097197</contig_pos>
        <strand>+</strand>
        <context>TTCYYAGCCT[A/T]AAAATGAATC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCT</left_flank>
        <right_flank>AAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGCTAGTCCTTTATTGGAAATCAAATTTGTTCTCGACTCATTTGTTACATCACGAAGAATCACATGGGATGGGGCGACGTAGGTGGTTTCAAATCGAGATTTCAGCATACCACGACGTAGACAGCAATCAACAGCAAAGACTCCTCCACAGACAGTGCCCTGTAATCAGAGGAATTGATCTCTTGTGTTTCTTGAAAAATTAAAGCTCAGAAAATTTTTGGCAACGTTTCATTTTTTGAAGTTTTCAGTTACCTTGTGAATTGGGAAAATTGCAGATTTTCAAAAACTCTCTTAGTGAGATGCAACTAACCGCGTAAATAGTGCTGCCATCTTGTTTCCAGCCTAGGGCACCTATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAATCGACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACGACTCCGTTCTCTGTGTAGGACAGTACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAGATTATATGGAGGCCATTGGAGTGTGCAAATCTTGGATTGAGTTTTACTGCTGAAGTTGTACAGAATGATGGATCCATCTTGATGTGCAGAGACAAAGGATGTCTTTTTTGGGCTGAAAAATAGTTTTTCCGGGGCATTGAGTATAATTCCGCCTACTGTGTCTGAATGCTGACGACTGTTTCGTCAGTCTTGAAGAGAGAACTGCATTTGTTGGTTTTGATAAGCCCGATTCTGACCTGAAATTCTCAGTTTATT</canonical>
            <polymorphic>TAGCTAGTCCTTTATTGGAAATCAAATTTGTTCTCGACTCATTTGTTACATCACGAAGAATCACATGGGATGGGGCGACGTAGGTGGTTTCAAATCGAGATTTCAGCATACCACGACGTAGACAGCAATCAACAGCAAAGACTCCTCCACAGACAGTGCCCTGTAATCAGAGGAATTGATCTCTTGTGTTTCTTGAAAAATTAAAGCTCAGAAAATTTTTGGCAACGTTTCATTTTTTGAAGTTTTCAGTTACCTTGTGAATTGGGAAAATTGCAGATTTTCAAAAACTCTCTTAGTGAGATGCAACTAACCGCGTAAATAGTGCTGCCATCTTGTTTCCAGCCTAGGGCACCTATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTWAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAATCGACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACGACTCCGTTCTCTGTGTAGGACAGTACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAGATTATATGGAGGCCATTGGAGTGTGCAAATCTTGGATTGAGTTTTACTGCTGAAGTTGTACAGAATGATGGATCCATCTTGATGTGCAGAGACAAAGGATGTCTTTTTTGGGCTGAAAAATAGTTTTTCCGGGGCATTGAGTATAATTCCGCCTACTGTGTCTGAATGCTGACGACTGTTTCGTCAGTCTTGAAGAGAGAACTGCATTTGTTGGTTTTGATAAGCCCGATTCTGACCTGAAATTCTCAGTTTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>501 257 201 22 19</canonical_bands>
                <polymorphic_bands>523 257 201 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCGAGTAAGCATTCTGAATTT</pcr_primer_p1>
		<pcr_primer_p2>GTCGTGGCTAGTTATAATAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGAC</canonical_amplicon>
		<polymorphic_amplicon>TATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTWAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21731</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1097191</contig_pos>
        <strand>+</strand>
        <context>GAAACMTTCY[C/T]AGCCTWAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCC</left_flank>
        <right_flank>AGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCGATAGCTAGTCCTTTATTGGAAATCAAATTTGTTCTCGACTCATTTGTTACATCACGAAGAATCACATGGGATGGGGCGACGTAGGTGGTTTCAAATCGAGATTTCAGCATACCACGACGTAGACAGCAATCAACAGCAAAGACTCCTCCACAGACAGTGCCCTGTAATCAGAGGAATTGATCTCTTGTGTTTCTTGAAAAATTAAAGCTCAGAAAATTTTTGGCAACGTTTCATTTTTTGAAGTTTTCAGTTACCTTGTGAATTGGGAAAATTGCAGATTTTCAAAAACTCTCTTAGTGAGATGCAACTAACCGCGTAAATAGTGCTGCCATCTTGTTTCCAGCCTAGGGCACCTATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAATCGACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACGACTCCGTTCTCTGTGTAGGACAGTACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAGATTATATGGAGGCCATTGGAGTGTGCAAATCTTGGATTGAGTTTTACTGCTGAAGTTGTACAGAATGATGGATCCATCTTGATGTGCAGAGACAAAGGATGTCTTTTTTGGGCTGAAAAATAGTTTTTCCGGGGCATTGAGTATAATTCCGCCTACTGTGTCTGAATGCTGACGACTGTTTCGTCAGTCTTGAAGAGAGAACTGCATTTGTTGGTTTTGATAAGCCCGATTCTGACCTGAAATTCTCAG</canonical>
            <polymorphic>CATCGATAGCTAGTCCTTTATTGGAAATCAAATTTGTTCTCGACTCATTTGTTACATCACGAAGAATCACATGGGATGGGGCGACGTAGGTGGTTTCAAATCGAGATTTCAGCATACCACGACGTAGACAGCAATCAACAGCAAAGACTCCTCCACAGACAGTGCCCTGTAATCAGAGGAATTGATCTCTTGTGTTTCTTGAAAAATTAAAGCTCAGAAAATTTTTGGCAACGTTTCATTTTTTGAAGTTTTCAGTTACCTTGTGAATTGGGAAAATTGCAGATTTTCAAAAACTCTCTTAGTGAGATGCAACTAACCGCGTAAATAGTGCTGCCATCTTGTTTCCAGCCTAGGGCACCTATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCYAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAATCGACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACGACTCCGTTCTCTGTGTAGGACAGTACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAGATTATATGGAGGCCATTGGAGTGTGCAAATCTTGGATTGAGTTTTACTGCTGAAGTTGTACAGAATGATGGATCCATCTTGATGTGCAGAGACAAAGGATGTCTTTTTTGGGCTGAAAAATAGTTTTTCCGGGGCATTGAGTATAATTCCGCCTACTGTGTCTGAATGCTGACGACTGTTTCGTCAGTCTTGAAGAGAGAACTGCATTTGTTGGTTTTGATAAGCCCGATTCTGACCTGAAATTCTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>415 340 149 86 10</canonical_bands>
                <polymorphic_bands>415 340 235 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCGAGTAAGCATTCTGAATTT</pcr_primer_p1>
		<pcr_primer_p2>GTCGTGGCTAGTTATAATAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGAC</canonical_amplicon>
		<polymorphic_amplicon>TATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCYAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21732</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1097190</contig_pos>
        <strand>+</strand>
        <context>KGAAACMTTC[C/T]YAGCCTWAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTC</left_flank>
        <right_flank>TAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATCGATAGCTAGTCCTTTATTGGAAATCAAATTTGTTCTCGACTCATTTGTTACATCACGAAGAATCACATGGGATGGGGCGACGTAGGTGGTTTCAAATCGAGATTTCAGCATACCACGACGTAGACAGCAATCAACAGCAAAGACTCCTCCACAGACAGTGCCCTGTAATCAGAGGAATTGATCTCTTGTGTTTCTTGAAAAATTAAAGCTCAGAAAATTTTTGGCAACGTTTCATTTTTTGAAGTTTTCAGTTACCTTGTGAATTGGGAAAATTGCAGATTTTCAAAAACTCTCTTAGTGAGATGCAACTAACCGCGTAAATAGTGCTGCCATCTTGTTTCCAGCCTAGGGCACCTATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAATCGACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACGACTCCGTTCTCTGTGTAGGACAGTACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAGATTATATGGAGGCCATTGGAGTGTGCAAATCTTGGATTGAGTTTTACTGCTGAAGTTGTACAGAATGATGGATCCATCTTGATGTGCAGAGACAAAGGATGTCTTTTTTGGGCTGAAAAATAGTTTTTCCGGGGCATTGAGTATAATTCCGCCTACTGTGTCTGAATGCTGACGACTGTTTCGTCAGTCTTGAAGAGAGAACTGCATTTGTTGGTTTTGATAAGCCCGATTCTGACCTGAAATTCTCA</canonical>
            <polymorphic>TCATCGATAGCTAGTCCTTTATTGGAAATCAAATTTGTTCTCGACTCATTTGTTACATCACGAAGAATCACATGGGATGGGGCGACGTAGGTGGTTTCAAATCGAGATTTCAGCATACCACGACGTAGACAGCAATCAACAGCAAAGACTCCTCCACAGACAGTGCCCTGTAATCAGAGGAATTGATCTCTTGTGTTTCTTGAAAAATTAAAGCTCAGAAAATTTTTGGCAACGTTTCATTTTTTGAAGTTTTCAGTTACCTTGTGAATTGGGAAAATTGCAGATTTTCAAAAACTCTCTTAGTGAGATGCAACTAACCGCGTAAATAGTGCTGCCATCTTGTTTCCAGCCTAGGGCACCTATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCYTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAATCGACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACGACTCCGTTCTCTGTGTAGGACAGTACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAGATTATATGGAGGCCATTGGAGTGTGCAAATCTTGGATTGAGTTTTACTGCTGAAGTTGTACAGAATGATGGATCCATCTTGATGTGCAGAGACAAAGGATGTCTTTTTTGGGCTGAAAAATAGTTTTTCCGGGGCATTGAGTATAATTCCGCCTACTGTGTCTGAATGCTGACGACTGTTTCGTCAGTCTTGAAGAGAGAACTGCATTTGTTGGTTTTGATAAGCCCGATTCTGACCTGAAATTCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>414 340 149 86 11</canonical_bands>
                <polymorphic_bands>414 340 235 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCGAGTAAGCATTCTGAATTT</pcr_primer_p1>
		<pcr_primer_p2>GTCGTGGCTAGTTATAATAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGAC</canonical_amplicon>
		<polymorphic_amplicon>TATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCYTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21733</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1097186</contig_pos>
        <strand>+</strand>
        <context>RATGKGAAAC[A/C]TTCYYAGCCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAAC</left_flank>
        <right_flank>TTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCTCATCGATAGCTAGTCCTTTATTGGAAATCAAATTTGTTCTCGACTCATTTGTTACATCACGAAGAATCACATGGGATGGGGCGACGTAGGTGGTTTCAAATCGAGATTTCAGCATACCACGACGTAGACAGCAATCAACAGCAAAGACTCCTCCACAGACAGTGCCCTGTAATCAGAGGAATTGATCTCTTGTGTTTCTTGAAAAATTAAAGCTCAGAAAATTTTTGGCAACGTTTCATTTTTTGAAGTTTTCAGTTACCTTGTGAATTGGGAAAATTGCAGATTTTCAAAAACTCTCTTAGTGAGATGCAACTAACCGCGTAAATAGTGCTGCCATCTTGTTTCCAGCCTAGGGCACCTATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAATCGACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACGACTCCGTTCTCTGTGTAGGACAGTACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAGATTATATGGAGGCCATTGGAGTGTGCAAATCTTGGATTGAGTTTTACTGCTGAAGTTGTACAGAATGATGGATCCATCTTGATGTGCAGAGACAAAGGATGTCTTTTTTGGGCTGAAAAATAGTTTTTCCGGGGCATTGAGTATAATTCCGCCTACTGTGTCTGAATGCTGACGACTGTTTCGTCAGTCTTGAAGAGAGAACTGCATTTGTTGGTTTTGATAAGCCCGATTCTGACCTGAAATT</canonical>
            <polymorphic>CAGCTCATCGATAGCTAGTCCTTTATTGGAAATCAAATTTGTTCTCGACTCATTTGTTACATCACGAAGAATCACATGGGATGGGGCGACGTAGGTGGTTTCAAATCGAGATTTCAGCATACCACGACGTAGACAGCAATCAACAGCAAAGACTCCTCCACAGACAGTGCCCTGTAATCAGAGGAATTGATCTCTTGTGTTTCTTGAAAAATTAAAGCTCAGAAAATTTTTGGCAACGTTTCATTTTTTGAAGTTTTCAGTTACCTTGTGAATTGGGAAAATTGCAGATTTTCAAAAACTCTCTTAGTGAGATGCAACTAACCGCGTAAATAGTGCTGCCATCTTGTTTCCAGCCTAGGGCACCTATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACMTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAATCGACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACGACTCCGTTCTCTGTGTAGGACAGTACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAGATTATATGGAGGCCATTGGAGTGTGCAAATCTTGGATTGAGTTTTACTGCTGAAGTTGTACAGAATGATGGATCCATCTTGATGTGCAGAGACAAAGGATGTCTTTTTTGGGCTGAAAAATAGTTTTTCCGGGGCATTGAGTATAATTCCGCCTACTGTGTCTGAATGCTGACGACTGTTTCGTCAGTCTTGAAGAGAGAACTGCATTTGTTGGTTTTGATAAGCCCGATTCTGACCTGAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCGAGTAAGCATTCTGAATTT</pcr_primer_p1>
		<pcr_primer_p2>GTCGTGGCTAGTTATAATAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGAC</canonical_amplicon>
		<polymorphic_amplicon>TATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACMTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21734</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1097180</contig_pos>
        <strand>+</strand>
        <context>TCGATTRATG[G/T]GAAACMTTCY</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATG</left_flank>
        <right_flank>GAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTTCAGCTCATCGATAGCTAGTCCTTTATTGGAAATCAAATTTGTTCTCGACTCATTTGTTACATCACGAAGAATCACATGGGATGGGGCGACGTAGGTGGTTTCAAATCGAGATTTCAGCATACCACGACGTAGACAGCAATCAACAGCAAAGACTCCTCCACAGACAGTGCCCTGTAATCAGAGGAATTGATCTCTTGTGTTTCTTGAAAAATTAAAGCTCAGAAAATTTTTGGCAACGTTTCATTTTTTGAAGTTTTCAGTTACCTTGTGAATTGGGAAAATTGCAGATTTTCAAAAACTCTCTTAGTGAGATGCAACTAACCGCGTAAATAGTGCTGCCATCTTGTTTCCAGCCTAGGGCACCTATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAATCGACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACGACTCCGTTCTCTGTGTAGGACAGTACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAGATTATATGGAGGCCATTGGAGTGTGCAAATCTTGGATTGAGTTTTACTGCTGAAGTTGTACAGAATGATGGATCCATCTTGATGTGCAGAGACAAAGGATGTCTTTTTTGGGCTGAAAAATAGTTTTTCCGGGGCATTGAGTATAATTCCGCCTACTGTGTCTGAATGCTGACGACTGTTTCGTCAGTCTTGAAGAGAGAACTGCATTTGTTGGTTTTGATAAGCCCGATTCTGACCT</canonical>
            <polymorphic>GATTTTCAGCTCATCGATAGCTAGTCCTTTATTGGAAATCAAATTTGTTCTCGACTCATTTGTTACATCACGAAGAATCACATGGGATGGGGCGACGTAGGTGGTTTCAAATCGAGATTTCAGCATACCACGACGTAGACAGCAATCAACAGCAAAGACTCCTCCACAGACAGTGCCCTGTAATCAGAGGAATTGATCTCTTGTGTTTCTTGAAAAATTAAAGCTCAGAAAATTTTTGGCAACGTTTCATTTTTTGAAGTTTTCAGTTACCTTGTGAATTGGGAAAATTGCAGATTTTCAAAAACTCTCTTAGTGAGATGCAACTAACCGCGTAAATAGTGCTGCCATCTTGTTTCCAGCCTAGGGCACCTATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGKGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAATCGACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACGACTCCGTTCTCTGTGTAGGACAGTACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAGATTATATGGAGGCCATTGGAGTGTGCAAATCTTGGATTGAGTTTTACTGCTGAAGTTGTACAGAATGATGGATCCATCTTGATGTGCAGAGACAAAGGATGTCTTTTTTGGGCTGAAAAATAGTTTTTCCGGGGCATTGAGTATAATTCCGCCTACTGTGTCTGAATGCTGACGACTGTTTCGTCAGTCTTGAAGAGAGAACTGCATTTGTTGGTTTTGATAAGCCCGATTCTGACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCGAGTAAGCATTCTGAATTT</pcr_primer_p1>
		<pcr_primer_p2>GTCGTGGCTAGTTATAATAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGAC</canonical_amplicon>
		<polymorphic_amplicon>TATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGKGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21735</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1097176</contig_pos>
        <strand>+</strand>
        <context>TATTTCGATT[A/G]ATGKGAAACM</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATT</left_flank>
        <right_flank>ATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCATGATTTTCAGCTCATCGATAGCTAGTCCTTTATTGGAAATCAAATTTGTTCTCGACTCATTTGTTACATCACGAAGAATCACATGGGATGGGGCGACGTAGGTGGTTTCAAATCGAGATTTCAGCATACCACGACGTAGACAGCAATCAACAGCAAAGACTCCTCCACAGACAGTGCCCTGTAATCAGAGGAATTGATCTCTTGTGTTTCTTGAAAAATTAAAGCTCAGAAAATTTTTGGCAACGTTTCATTTTTTGAAGTTTTCAGTTACCTTGTGAATTGGGAAAATTGCAGATTTTCAAAAACTCTCTTAGTGAGATGCAACTAACCGCGTAAATAGTGCTGCCATCTTGTTTCCAGCCTAGGGCACCTATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAATCGACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACGACTCCGTTCTCTGTGTAGGACAGTACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAGATTATATGGAGGCCATTGGAGTGTGCAAATCTTGGATTGAGTTTTACTGCTGAAGTTGTACAGAATGATGGATCCATCTTGATGTGCAGAGACAAAGGATGTCTTTTTTGGGCTGAAAAATAGTTTTTCCGGGGCATTGAGTATAATTCCGCCTACTGTGTCTGAATGCTGACGACTGTTTCGTCAGTCTTGAAGAGAGAACTGCATTTGTTGGTTTTGATAAGCCCGATTCTG</canonical>
            <polymorphic>CCATGATTTTCAGCTCATCGATAGCTAGTCCTTTATTGGAAATCAAATTTGTTCTCGACTCATTTGTTACATCACGAAGAATCACATGGGATGGGGCGACGTAGGTGGTTTCAAATCGAGATTTCAGCATACCACGACGTAGACAGCAATCAACAGCAAAGACTCCTCCACAGACAGTGCCCTGTAATCAGAGGAATTGATCTCTTGTGTTTCTTGAAAAATTAAAGCTCAGAAAATTTTTGGCAACGTTTCATTTTTTGAAGTTTTCAGTTACCTTGTGAATTGGGAAAATTGCAGATTTTCAAAAACTCTCTTAGTGAGATGCAACTAACCGCGTAAATAGTGCTGCCATCTTGTTTCCAGCCTAGGGCACCTATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTRATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAATCGACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACGACTCCGTTCTCTGTGTAGGACAGTACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAGATTATATGGAGGCCATTGGAGTGTGCAAATCTTGGATTGAGTTTTACTGCTGAAGTTGTACAGAATGATGGATCCATCTTGATGTGCAGAGACAAAGGATGTCTTTTTTGGGCTGAAAAATAGTTTTTCCGGGGCATTGAGTATAATTCCGCCTACTGTGTCTGAATGCTGACGACTGTTTCGTCAGTCTTGAAGAGAGAACTGCATTTGTTGGTTTTGATAAGCCCGATTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>480 257 222 22 19</canonical_bands>
                <polymorphic_bands>480 257 222 41</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCGAGTAAGCATTCTGAATTT</pcr_primer_p1>
		<pcr_primer_p2>GTCGTGGCTAGTTATAATAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGAC</canonical_amplicon>
		<polymorphic_amplicon>TATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTRATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21758</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1121097</contig_pos>
        <strand>+</strand>
        <context>TTCGGAAATT[A/G]TGTTATTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACTTAAAAGTGTTTAAAAAGTTGTTGGGCTTCATATGGCTTCGGAAATT</left_flank>
        <right_flank>TGTTATTTTTTTTCTCTTCGGCTGTATTTTCAATTCCAAGATTCTATATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAGAAACAGAAAAATGAAGCGAGTGCACATTCATTTTCTCGAGATTTGAGAACCATTAATTTTTTTTTGAAACTTTTGGGATTTGACAGAAATCGCAATTCATCAAAAAGAGCAACAAAACAATTGAAGAAACAAAAAAAAAAGGAAAAAGGTTGAAAAATTCAATACAAGTACAGCAAAGTTTCAAATTTCCAGGGGAAACTTTCTCGGAGATTTTCCAGGAAAACGCAAAACTTTGCACAACAGCTGCACATGAACTTTGAGAAGACTGGGGAGAACATGATATTTCCCACTGATTGTGAGTGAGATCGAATTAACGGGCACACGTCATGCAGATAAAGTTTACAACATAGTTAACGCACAATAATTAGAGAGGTTATTTCATTTGCACCCGGAAGTTATTTGGAATCTTTGAATTTTTGTGAGGGTGGCTTTCTTAAAGAAACTGAACTTAAAAGTGTTTAAAAAGTTGTTGGGCTTCATATGGCTTCGGAAATTGTGTTATTTTTTTTCTCTTCGGCTGTATTTTCAATTCCAAGATTCTATATAACTCCTGATGGCGCCTGAAATAACCTTTATCCTGTTTTTAATTACTCACGTTTATTCCAGGCTTTCCGTTCCAGTAATTGGTTCCTACTTTCAACCTCTTTTCGAAGTAGAAGAATTTGATAGAAGAATGAATGAAGACGTCTGTAACAAAACAAGATGAGAAAAAAAAGAATATCTTCTGGATGTCATCAACAAGAAAAGAGGCAATCGAATACCCTGCACGAAGGGAGGATAATGGGATTCTGGAGCAAAGCAAAAAGGACAAAGGAGACACCGGATGTGCAAGTAGATGAGAAAAAAGTATTATTTGTTCTGGAAATGGGTGTGATGTGACGGTTTATCATACAAATTTATTGATATATAGACTTCGTGAAAGATTTTTTCTGAAAGGACTACGAATAATAAGAGTAAAAGTTCATGAAAAGGGGTGAAATTTTGAAAGGAGACTAG</canonical>
            <polymorphic>GTAGAAACAGAAAAATGAAGCGAGTGCACATTCATTTTCTCGAGATTTGAGAACCATTAATTTTTTTTTGAAACTTTTGGGATTTGACAGAAATCGCAATTCATCAAAAAGAGCAACAAAACAATTGAAGAAACAAAAAAAAAAGGAAAAAGGTTGAAAAATTCAATACAAGTACAGCAAAGTTTCAAATTTCCAGGGGAAACTTTCTCGGAGATTTTCCAGGAAAACGCAAAACTTTGCACAACAGCTGCACATGAACTTTGAGAAGACTGGGGAGAACATGATATTTCCCACTGATTGTGAGTGAGATCGAATTAACGGGCACACGTCATGCAGATAAAGTTTACAACATAGTTAACGCACAATAATTAGAGAGGTTATTTCATTTGCACCCGGAAGTTATTTGGAATCTTTGAATTTTTGTGAGGGTGGCTTTCTTAAAGAAACTGAACTTAAAAGTGTTTAAAAAGTTGTTGGGCTTCATATGGCTTCGGAAATTRTGTTATTTTTTTTCTCTTCGGCTGTATTTTCAATTCCAAGATTCTATATAACTCCTGATGGCGCCTGAAATAACCTTTATCCTGTTTTTAATTACTCACGTTTATTCCAGGCTTTCCGTTCCAGTAATTGGTTCCTACTTTCAACCTCTTTTCGAAGTAGAAGAATTTGATAGAAGAATGAATGAAGACGTCTGTAACAAAACAAGATGAGAAAAAAAAGAATATCTTCTGGATGTCATCAACAAGAAAAGAGGCAATCGAATACCCTGCACGAAGGGAGGATAATGGGATTCTGGAGCAAAGCAAAAAGGACAAAGGAGACACCGGATGTGCAAGTAGATGAGAAAAAAGTATTATTTGTTCTGGAAATGGGTGTGATGTGACGGTTTATCATACAAATTTATTGATATATAGACTTCGTGAAAGATTTTTTCTGAAAGGACTACGAATAATAAGAGTAAAAGTTCATGAAAAGGGGTGAAATTTTGAAAGGAGACTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>213 173 96 58 52 43 41 41 40 36 34 30 29 26 20 18 11 9 9 6 5 4 2 2 2</canonical_bands>
                <polymorphic_bands>213 173 137 58 52 43 41 40 36 34 30 29 26 20 18 11 9 9 6 5 4 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAACGCACAATAATTAGAGAGG</pcr_primer_p1>
		<pcr_primer_p2>AAACGTGAGTAATTAAAAACAGG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTAACGCACAATAATTAGAGAGGTTATTTCATTTGCACCCGGAAGTTATTTGGAATCTTTGAATTTTTGTGAGGGTGGCTTTCTTAAAGAAACTGAACTTAAAAGTGTTTAAAAAGTTGTTGGGCTTCATATGGCTTCGGAAATTGTGTTATTTTTTTTCTCTTCGGCTGTATTTTCAATTCCAAGATTCTATATAACTCCTGATGGCGCCTGAAATAACCTTTATCCTGTTTTTAATTACTCACGTTT</canonical_amplicon>
		<polymorphic_amplicon>TTAACGCACAATAATTAGAGAGGTTATTTCATTTGCACCCGGAAGTTATTTGGAATCTTTGAATTTTTGTGAGGGTGGCTTTCTTAAAGAAACTGAACTTAAAAGTGTTTAAAAAGTTGTTGGGCTTCATATGGCTTCGGAAATTRTGTTATTTTTTTTCTCTTCGGCTGTATTTTCAATTCCAAGATTCTATATAACTCCTGATGGCGCCTGAAATAACCTTTATCCTGTTTTTAATTACTCACGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21759</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1120822</contig_pos>
        <strand>+</strand>
        <context>TTTTCCAGGA[A/G]AACGCAAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGCAAAGTTTCAAATTTCCAGGGGAAACTTTCTCGGAGATTTTCCAGGA</left_flank>
        <right_flank>AACGCAAAACTTTGCACAACAGCTGCACATGAACTTTGAGAAGACTGGGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATTACTGTAGATTAAATTGCCAACAACAAAGCAAAAAAAAAACAATTTCAGAGTATTAACGTTCTGAGCCATAAGGCTTTACGGTCCCACAATGAGAATGCTCCTTTTTCTGTTGTTGTTTCGTCACACAACACAAAAATCAAAGTTTCTGCGAAAGAACCCAGCGGAAGCGCTAATTCCATGGTCCTCTGCTCCTGGTACTCGGAGAACCAGGAAATGCACGAAAATGGAGCAGAGTGGGAGAAAAACGCCTATGAATAGGAAATGATGAGAGTAGAAACAGAAAAATGAAGCGAGTGCACATTCATTTTCTCGAGATTTGAGAACCATTAATTTTTTTTTGAAACTTTTGGGATTTGACAGAAATCGCAATTCATCAAAAAGAGCAACAAAACAATTGAAGAAACAAAAAAAAAAGGAAAAAGGTTGAAAAATTCAATACAAGTACAGCAAAGTTTCAAATTTCCAGGGGAAACTTTCTCGGAGATTTTCCAGGAAAACGCAAAACTTTGCACAACAGCTGCACATGAACTTTGAGAAGACTGGGGAGAACATGATATTTCCCACTGATTGTGAGTGAGATCGAATTAACGGGCACACGTCATGCAGATAAAGTTTACAACATAGTTAACGCACAATAATTAGAGAGGTTATTTCATTTGCACCCGGAAGTTATTTGGAATCTTTGAATTTTTGTGAGGGTGGCTTTCTTAAAGAAACTGAACTTAAAAGTGTTTAAAAAGTTGTTGGGCTTCATATGGCTTCGGAAATTGTGTTATTTTTTTTCTCTTCGGCTGTATTTTCAATTCCAAGATTCTATATAACTCCTGATGGCGCCTGAAATAACCTTTATCCTGTTTTTAATTACTCACGTTTATTCCAGGCTTTCCGTTCCAGTAATTGGTTCCTACTTTCAACCTCTTTTCGAAGTAGAAGAATTTGATAGAAGAATGAATGAAGACGTCTGTAACAAAACAAGATGAGAAAAAAAAGAATAT</canonical>
            <polymorphic>GGATTACTGTAGATTAAATTGCCAACAACAAAGCAAAAAAAAAACAATTTCAGAGTATTAACGTTCTGAGCCATAAGGCTTTACGGTCCCACAATGAGAATGCTCCTTTTTCTGTTGTTGTTTCGTCACACAACACAAAAATCAAAGTTTCTGCGAAAGAACCCAGCGGAAGCGCTAATTCCATGGTCCTCTGCTCCTGGTACTCGGAGAACCAGGAAATGCACGAAAATGGAGCAGAGTGGGAGAAAAACGCCTATGAATAGGAAATGATGAGAGTAGAAACAGAAAAATGAAGCGAGTGCACATTCATTTTCTCGAGATTTGAGAACCATTAATTTTTTTTTGAAACTTTTGGGATTTGACAGAAATCGCAATTCATCAAAAAGAGCAACAAAACAATTGAAGAAACAAAAAAAAAAGGAAAAAGGTTGAAAAATTCAATACAAGTACAGCAAAGTTTCAAATTTCCAGGGGAAACTTTCTCGGAGATTTTCCAGGARAACGCAAAACTTTGCACAACAGCTGCACATGAACTTTGAGAAGACTGGGGAGAACATGATATTTCCCACTGATTGTGAGTGAGATCGAATTAACGGGCACACGTCATGCAGATAAAGTTTACAACATAGTTAACGCACAATAATTAGAGAGGTTATTTCATTTGCACCCGGAAGTTATTTGGAATCTTTGAATTTTTGTGAGGGTGGCTTTCTTAAAGAAACTGAACTTAAAAGTGTTTAAAAAGTTGTTGGGCTTCATATGGCTTCGGAAATTGTGTTATTTTTTTTCTCTTCGGCTGTATTTTCAATTCCAAGATTCTATATAACTCCTGATGGCGCCTGAAATAACCTTTATCCTGTTTTTAATTACTCACGTTTATTCCAGGCTTTCCGTTCCAGTAATTGGTTCCTACTTTCAACCTCTTTTCGAAGTAGAAGAATTTGATAGAAGAATGAATGAAGACGTCTGTAACAAAACAAGATGAGAAAAAAAAGAATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAAACAATTGAAGAAACAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGTGCGTTAACTATGTTGTAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACAAAACAATTGAAGAAACAAAAAAAAAAGGAAAAAGGTTGAAAAATTCAATACAAGTACAGCAAAGTTTCAAATTTCCAGGGGAAACTTTCTCGGAGATTTTCCAGGAAAACGCAAAACTTTGCACAACAGCTGCACATGAACTTTGAGAAGACTGGGGAGAACATGATATTTCCCACTGATTGTGAGTGAGATCGAATTAACGGGCACACGTCATGCAGATAAAGTTTACAACATAGTTAACGCACAAT</canonical_amplicon>
		<polymorphic_amplicon>ACAAAACAATTGAAGAAACAAAAAAAAAAGGAAAAAGGTTGAAAAATTCAATACAAGTACAGCAAAGTTTCAAATTTCCAGGGGAAACTTTCTCGGAGATTTTCCAGGARAACGCAAAACTTTGCACAACAGCTGCACATGAACTTTGAGAAGACTGGGGAGAACATGATATTTCCCACTGATTGTGAGTGAGATCGAATTAACGGGCACACGTCATGCAGATAAAGTTTACAACATAGTTAACGCACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21761</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1143913</contig_pos>
        <strand>+</strand>
        <context>GATTTTGTTT[C/T]AATTTACATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTGATTATTTTTTAAAAATTTCCAGTAAGCACATCAACGATTTTGTTT</left_flank>
        <right_flank>AATTTACATATTCAAATTGTCCCATTTTTTTGTGCAGTCACCACAGATCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATGAATTATACTAATTGGATTCTTCCTTGCAGCGGAACCCTATGTGTCACTTAATAAAATGAAAAGGATGTTTCTCACCGAAAGCTGAACGAAGCTCAGCTGCTGTCGGGCCAATTTTCTCAGCGCTTCCTCAGCGTTACGATCCACTGGAAAAGCGACACCCTAAAAATTGACACATTTAGCAAAGTAAGAGCTAAAAATGAGCAAGACTCACCTTCAAATGTTGTGGTCCGGCATGAGCGATGGCGGCTCTCTCTTGCTGAGCATTGTGAAGTTCTTTCTCAACTTCACTCATTGGTCCCAGTTCGGTTTTTGCTTTCAGCCATGATTCGAAGGCAGTGAGAGTAAGATCCTGGAAGAAACAAAACGGTTTATAAAAAAATTTAACTTGTATTTCACGGTTTCCAGGTTGAACATTTTAATTTTTAGAATTGTTTTTTTTTTCCAATTTGATTATTTTTTAAAAATTTCCAGTAAGCACATCAACGATTTTGTTTCAATTTACATATTCAAATTGTCCCATTTTTTTGTGCAGTCACCACAGATCACTAACCTTACGGTCCGTGACATGTTTCTCGTGTTCGATGTAACACTGTCCGAACTCGCTTTTGAATGTGGCACATGTGGCCGCCAGAAGCATCTTCTCGCGAACCGGAGCACGATCGTCGACGAATCTGCAACAAAAAACAAGATCGTTAGTTTTCTGTCAAGAAACATGTGCGGTCCATGAAATTTGTAAGAATTCATTCGGGTGTCGTGTCCTTTAAAAATTCGAAACATGTGTGCACATTTTTCAAAAAATTCATTAATCTTGTTTGTTATCGAAATTGAGATCGATTATGATAGAGTTGTTTTTTAGAACATGTTCAGAAAAGCCAGAATTTTGATCAGTCCATTCTAAAATTCCAAATTAGAAAAAGCAAAATAGTCATTTTTCAAGCACCCTAACATGAATTCCAAAACTTACGTTATCAAAACCCATTCAGTGATTGTATTCA</canonical>
            <polymorphic>ACATGAATTATACTAATTGGATTCTTCCTTGCAGCGGAACCCTATGTGTCACTTAATAAAATGAAAAGGATGTTTCTCACCGAAAGCTGAACGAAGCTCAGCTGCTGTCGGGCCAATTTTCTCAGCGCTTCCTCAGCGTTACGATCCACTGGAAAAGCGACACCCTAAAAATTGACACATTTAGCAAAGTAAGAGCTAAAAATGAGCAAGACTCACCTTCAAATGTTGTGGTCCGGCATGAGCGATGGCGGCTCTCTCTTGCTGAGCATTGTGAAGTTCTTTCTCAACTTCACTCATTGGTCCCAGTTCGGTTTTTGCTTTCAGCCATGATTCGAAGGCAGTGAGAGTAAGATCCTGGAAGAAACAAAACGGTTTATAAAAAAATTTAACTTGTATTTCACGGTTTCCAGGTTGAACATTTTAATTTTTAGAATTGTTTTTTTTTTCCAATTTGATTATTTTTTAAAAATTTCCAGTAAGCACATCAACGATTTTGTTTYAATTTACATATTCAAATTGTCCCATTTTTTTGTGCAGTCACCACAGATCACTAACCTTACGGTCCGTGACATGTTTCTCGTGTTCGATGTAACACTGTCCGAACTCGCTTTTGAATGTGGCACATGTGGCCGCCAGAAGCATCTTCTCGCGAACCGGAGCACGATCGTCGACGAATCTGCAACAAAAAACAAGATCGTTAGTTTTCTGTCAAGAAACATGTGCGGTCCATGAAATTTGTAAGAATTCATTCGGGTGTCGTGTCCTTTAAAAATTCGAAACATGTGTGCACATTTTTCAAAAAATTCATTAATCTTGTTTGTTATCGAAATTGAGATCGATTATGATAGAGTTGTTTTTTAGAACATGTTCAGAAAAGCCAGAATTTTGATCAGTCCATTCTAAAATTCCAAATTAGAAAAAGCAAAATAGTCATTTTTCAAGCACCCTAACATGAATTCCAAAACTTACGTTATCAAAACCCATTCAGTGATTGTATTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAGTAAGATCCTGGAAGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TACATCGAACACGAGAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAGAGTAAGATCCTGGAAGAAACAAAACGGTTTATAAAAAAATTTAACTTGTATTTCACGGTTTCCAGGTTGAACATTTTAATTTTTAGAATTGTTTTTTTTTTCCAATTTGATTATTTTTTAAAAATTTCCAGTAAGCACATCAACGATTTTGTTTCAATTTACATATTCAAATTGTCCCATTTTTTTGTGCAGTCACCACAGATCACTAACCTTACGGTCCGTGACATGTTTCTCGTGTTCGATGTA</canonical_amplicon>
		<polymorphic_amplicon>GAGAGTAAGATCCTGGAAGAAACAAAACGGTTTATAAAAAAATTTAACTTGTATTTCACGGTTTCCAGGTTGAACATTTTAATTTTTAGAATTGTTTTTTTTTTCCAATTTGATTATTTTTTAAAAATTTCCAGTAAGCACATCAACGATTTTGTTTYAATTTACATATTCAAATTGTCCCATTTTTTTGTGCAGTCACCACAGATCACTAACCTTACGGTCCGTGACATGTTTCTCGTGTTCGATGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21762</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1143963</contig_pos>
        <strand></strand>
        <context>ACCACAGATC[A/C]CMAACCTTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAATTTACATATTCAAATTGTCCCATTTTTTTGTGCAGTCACCACAGATC</left_flank>
        <right_flank>CTAACCTTACGGTCCGTGACATGTTTCTCGTGTTCGATGTAACACTGTCC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTAATAAAATGAAAAGGATGTTTCTCACCGAAAGCTGAACGAAGCTCAGCTGCTGTCGGGCCAATTTTCTCAGCGCTTCCTCAGCGTTACGATCCACTGGAAAAGCGACACCCTAAAAATTGACACATTTAGCAAAGTAAGAGCTAAAAATGAGCAAGACTCACCTTCAAATGTTGTGGTCCGGCATGAGCGATGGCGGCTCTCTCTTGCTGAGCATTGTGAAGTTCTTTCTCAACTTCACTCATTGGTCCCAGTTCGGTTTTTGCTTTCAGCCATGATTCGAAGGCAGTGAGAGTAAGATCCTGGAAGAAACAAAACGGTTTATAAAAAAATTTAACTTGTATTTCACGGTTTCCAGGTTGAACATTTTAATTTTTAGAATTGTTTTTTTTTTCCAATTTGATTATTTTTTAAAAATTTCCAGTAAGCACATCAACGATTTTGTTTCAATTTACATATTCAAATTGTCCCATTTTTTTGTGCAGTCACCACAGATCACTAACCTTACGGTCCGTGACATGTTTCTCGTGTTCGATGTAACACTGTCCGAACTCGCTTTTGAATGTGGCACATGTGGCCGCCAGAAGCATCTTCTCGCGAACCGGAGCACGATCGTCGACGAATCTGCAACAAAAAACAAGATCGTTAGTTTTCTGTCAAGAAACATGTGCGGTCCATGAAATTTGTAAGAATTCATTCGGGTGTCGTGTCCTTTAAAAATTCGAAACATGTGTGCACATTTTTCAAAAAATTCATTAATCTTGTTTGTTATCGAAATTGAGATCGATTATGATAGAGTTGTTTTTTAGAACATGTTCAGAAAAGCCAGAATTTTGATCAGTCCATTCTAAAATTCCAAATTAGAAAAAGCAAAATAGTCATTTTTCAAGCACCCTAACATGAATTCCAAAACTTACGTTATCAAAACCCATTCAGTGATTGTATTCAAACGGAACAAGATGAAGCATGGCTCATATGCATCCACACATTCCGGTAGA</canonical>
            <polymorphic>ACTTAATAAAATGAAAAGGATGTTTCTCACCGAAAGCTGAACGAAGCTCAGCTGCTGTCGGGCCAATTTTCTCAGCGCTTCCTCAGCGTTACGATCCACTGGAAAAGCGACACCCTAAAAATTGACACATTTAGCAAAGTAAGAGCTAAAAATGAGCAAGACTCACCTTCAAATGTTGTGGTCCGGCATGAGCGATGGCGGCTCTCTCTTGCTGAGCATTGTGAAGTTCTTTCTCAACTTCACTCATTGGTCCCAGTTCGGTTTTTGCTTTCAGCCATGATTCGAAGGCAGTGAGAGTAAGATCCTGGAAGAAACAAAACGGTTTATAAAAAAATTTAACTTGTATTTCACGGTTTCCAGGTTGAACATTTTAATTTTTAGAATTGTTTTTTTTTTCCAATTTGATTATTTTTTAAAAATTTCCAGTAAGCACATCAACGATTTTGTTTCAATTTACATATTCAAATTGTCCCATTTTTTTGTGCAGTCACCACAGATCMCTAACCTTACGGTCCGTGACATGTTTCTCGTGTTCGATGTAACACTGTCCGAACTCGCTTTTGAATGTGGCACATGTGGCCGCCAGAAGCATCTTCTCGCGAACCGGAGCACGATCGTCGACGAATCTGCAACAAAAAACAAGATCGTTAGTTTTCTGTCAAGAAACATGTGCGGTCCATGAAATTTGTAAGAATTCATTCGGGTGTCGTGTCCTTTAAAAATTCGAAACATGTGTGCACATTTTTCAAAAAATTCATTAATCTTGTTTGTTATCGAAATTGAGATCGATTATGATAGAGTTGTTTTTTAGAACATGTTCAGAAAAGCCAGAATTTTGATCAGTCCATTCTAAAATTCCAAATTAGAAAAAGCAAAATAGTCATTTTTCAAGCACCCTAACATGAATTCCAAAACTTACGTTATCAAAACCCATTCAGTGATTGTATTCAAACGGAACAAGATGAAGCATGGCTCATATGCATCCACACATTCCGGTAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>155 82 69 61 57 52 51 46 46 43 38 34 33 29 25 24 19 18 15 15 14 14 12 12 7 6 6 5 3 3 2 2 2</canonical_bands>
                <polymorphic_bands>155 82 69 61 57 52 51 46 46 43 38 34 33 29 25 25 24 19 15 15 14 14 12 12 6 6 5 3 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAACTTGTATTTCACGGTTTC</pcr_primer_p1>
		<pcr_primer_p2>GAGTTCGGACAGTGTTACATC</pcr_primer_p2>
		<pcr_amplicon_size>222</pcr_amplicon_size>
		<canonical_amplicon>TTTAACTTGTATTTCACGGTTTCCAGGTTGAACATTTTAATTTTTAGAATTGTTTTTTTTTTCCAATTTGATTATTTTTTAAAAATTTCCAGTAAGCACATCAACGATTTTGTTTCAATTTACATATTCAAATTGTCCCATTTTTTTGTGCAGTCACCACAGATCACTAACCTTACGGTCCGTGACATGTTTCTCGTGTTCGATGTAACACTGTCCGAACTC</canonical_amplicon>
		<polymorphic_amplicon>TTTAACTTGTATTTCACGGTTTCCAGGTTGAACATTTTAATTTTTAGAATTGTTTTTTTTTTCCAATTTGATTATTTTTTAAAAATTTCCAGTAAGCACATCAACGATTTTGTTTCAATTTACATATTCAAATTGTCCCATTTTTTTGTGCAGTCACCACAGATCMCTAACCTTACGGTCCGTGACATGTTTCTCGTGTTCGATGTAACACTGTCCGAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21764</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1144153</contig_pos>
        <strand></strand>
        <context>TGAAATTTGT[A/G]RGAATTCATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAGATCGTTAGTTTTCTGTCAAGAAACATGTGCGGTCCATGAAATTTGT</left_flank>
        <right_flank>AGAATTCATTCGGGTGTCGTGTCCTTTAAAAATTCGAAACATGTGTGCAC</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCGATGGCGGCTCTCTCTTGCTGAGCATTGTGAAGTTCTTTCTCAACTTCACTCATTGGTCCCAGTTCGGTTTTTGCTTTCAGCCATGATTCGAAGGCAGTGAGAGTAAGATCCTGGAAGAAACAAAACGGTTTATAAAAAAATTTAACTTGTATTTCACGGTTTCCAGGTTGAACATTTTAATTTTTAGAATTGTTTTTTTTTTCCAATTTGATTATTTTTTAAAAATTTCCAGTAAGCACATCAACGATTTTGTTTCAATTTACATATTCAAATTGTCCCATTTTTTTGTGCAGTCACCACAGATCACTAACCTTACGGTCCGTGACATGTTTCTCGTGTTCGATGTAACACTGTCCGAACTCGCTTTTGAATGTGGCACATGTGGCCGCCAGAAGCATCTTCTCGCGAACCGGAGCACGATCGTCGACGAATCTGCAACAAAAAACAAGATCGTTAGTTTTCTGTCAAGAAACATGTGCGGTCCATGAAATTTGTAAGAATTCATTCGGGTGTCGTGTCCTTTAAAAATTCGAAACATGTGTGCACATTTTTCAAAAAATTCATTAATCTTGTTTGTTATCGAAATTGAGATCGATTATGATAGAGTTGTTTTTTAGAACATGTTCAGAAAAGCCAGAATTTTGATCAGTCCATTCTAAAATTCCAAATTAGAAAAAGCAAAATAGTCATTTTTCAAGCACCCTAACATGAATTCCAAAACTTACGTTATCAAAACCCATTCAGTGATTGTATTCAAACGGAACAAGATGAAGCATGGCTCATATGCATCCACACATTCCGGTAGACACGCTTTCCAATCATCACGCCAGTTGGCAGTTCCAGCGAACTCGTAGTTTGGCGTCATCTCCTCATTATTCACGACAATCTTGATGAGCCGCAGTTTGGCCTGTTTTCCCAAGTTGAGTGCATTTCGAAGTGCGGCGTTTGCTGCAAAACGTCTCCATTTTAGTGGTGTTGCTCGTCATTTCTGTTTCC</canonical>
            <polymorphic>AGCGATGGCGGCTCTCTCTTGCTGAGCATTGTGAAGTTCTTTCTCAACTTCACTCATTGGTCCCAGTTCGGTTTTTGCTTTCAGCCATGATTCGAAGGCAGTGAGAGTAAGATCCTGGAAGAAACAAAACGGTTTATAAAAAAATTTAACTTGTATTTCACGGTTTCCAGGTTGAACATTTTAATTTTTAGAATTGTTTTTTTTTTCCAATTTGATTATTTTTTAAAAATTTCCAGTAAGCACATCAACGATTTTGTTTCAATTTACATATTCAAATTGTCCCATTTTTTTGTGCAGTCACCACAGATCACTAACCTTACGGTCCGTGACATGTTTCTCGTGTTCGATGTAACACTGTCCGAACTCGCTTTTGAATGTGGCACATGTGGCCGCCAGAAGCATCTTCTCGCGAACCGGAGCACGATCGTCGACGAATCTGCAACAAAAAACAAGATCGTTAGTTTTCTGTCAAGAAACATGTGCGGTCCATGAAATTTGTRAGAATTCATTCGGGTGTCGTGTCCTTTAAAAATTCGAAACATGTGTGCACATTTTTCAAAAAATTCATTAATCTTGTTTGTTATCGAAATTGAGATCGATTATGATAGAGTTGTTTTTTAGAACATGTTCAGAAAAGCCAGAATTTTGATCAGTCCATTCTAAAATTCCAAATTAGAAAAAGCAAAATAGTCATTTTTCAAGCACCCTAACATGAATTCCAAAACTTACGTTATCAAAACCCATTCAGTGATTGTATTCAAACGGAACAAGATGAAGCATGGCTCATATGCATCCACACATTCCGGTAGACACGCTTTCCAATCATCACGCCAGTTGGCAGTTCCAGCGAACTCGTAGTTTGGCGTCATCTCCTCATTATTCACGACAATCTTGATGAGCCGCAGTTTGGCCTGTTTTCCCAAGTTGAGTGCATTTCGAAGTGCGGCGTTTGCTGCAAAACGTCTCCATTTTAGTGGTGTTGCTCGTCATTTCTGTTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGTAACACTGTCCGAACTC</pcr_primer_p1>
		<pcr_primer_p2>CAATTTCGATAACAAACAAGATT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GATGTAACACTGTCCGAACTCGCTTTTGAATGTGGCACATGTGGCCGCCAGAAGCATCTTCTCGCGAACCGGAGCACGATCGTCGACGAATCTGCAACAAAAAACAAGATCGTTAGTTTTCTGTCAAGAAACATGTGCGGTCCATGAAATTTGTAAGAATTCATTCGGGTGTCGTGTCCTTTAAAAATTCGAAACATGTGTGCACATTTTTCAAAAAATTCATTAATCTTGTTTGTTATCGAAATTG</canonical_amplicon>
		<polymorphic_amplicon>GATGTAACACTGTCCGAACTCGCTTTTGAATGTGGCACATGTGGCCGCCAGAAGCATCTTCTCGCGAACCGGAGCACGATCGTCGACGAATCTGCAACAAAAAACAAGATCGTTAGTTTTCTGTCAAGAAACATGTGCGGTCCATGAAATTTGTRAGAATTCATTCGGGTGTCGTGTCCTTTAAAAATTCGAAACATGTGTGCACATTTTTCAAAAAATTCATTAATCTTGTTTGTTATCGAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21765</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1144166</contig_pos>
        <strand>+</strand>
        <context>AATTCATTCG[A/G]GTGTCGTGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCTGTCAAGAAACATGTGCGGTCCATGAAATTTGTAAGAATTCATTCG</left_flank>
        <right_flank>GTGTCGTGTCCTTTAAAAATTCGAAACATGTGTGCACATTTTTCAAAAAA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTCTTGCTGAGCATTGTGAAGTTCTTTCTCAACTTCACTCATTGGTCCCAGTTCGGTTTTTGCTTTCAGCCATGATTCGAAGGCAGTGAGAGTAAGATCCTGGAAGAAACAAAACGGTTTATAAAAAAATTTAACTTGTATTTCACGGTTTCCAGGTTGAACATTTTAATTTTTAGAATTGTTTTTTTTTTCCAATTTGATTATTTTTTAAAAATTTCCAGTAAGCACATCAACGATTTTGTTTCAATTTACATATTCAAATTGTCCCATTTTTTTGTGCAGTCACCACAGATCACTAACCTTACGGTCCGTGACATGTTTCTCGTGTTCGATGTAACACTGTCCGAACTCGCTTTTGAATGTGGCACATGTGGCCGCCAGAAGCATCTTCTCGCGAACCGGAGCACGATCGTCGACGAATCTGCAACAAAAAACAAGATCGTTAGTTTTCTGTCAAGAAACATGTGCGGTCCATGAAATTTGTAAGAATTCATTCGGGTGTCGTGTCCTTTAAAAATTCGAAACATGTGTGCACATTTTTCAAAAAATTCATTAATCTTGTTTGTTATCGAAATTGAGATCGATTATGATAGAGTTGTTTTTTAGAACATGTTCAGAAAAGCCAGAATTTTGATCAGTCCATTCTAAAATTCCAAATTAGAAAAAGCAAAATAGTCATTTTTCAAGCACCCTAACATGAATTCCAAAACTTACGTTATCAAAACCCATTCAGTGATTGTATTCAAACGGAACAAGATGAAGCATGGCTCATATGCATCCACACATTCCGGTAGACACGCTTTCCAATCATCACGCCAGTTGGCAGTTCCAGCGAACTCGTAGTTTGGCGTCATCTCCTCATTATTCACGACAATCTTGATGAGCCGCAGTTTGGCCTGTTTTCCCAAGTTGAGTGCATTTCGAAGTGCGGCGTTTGCTGCAAAACGTCTCCATTTTAGTGGTGTTGCTCGTCATTTCTGTTTCCCCTTCTATTCTTT</canonical>
            <polymorphic>CTCTCTTGCTGAGCATTGTGAAGTTCTTTCTCAACTTCACTCATTGGTCCCAGTTCGGTTTTTGCTTTCAGCCATGATTCGAAGGCAGTGAGAGTAAGATCCTGGAAGAAACAAAACGGTTTATAAAAAAATTTAACTTGTATTTCACGGTTTCCAGGTTGAACATTTTAATTTTTAGAATTGTTTTTTTTTTCCAATTTGATTATTTTTTAAAAATTTCCAGTAAGCACATCAACGATTTTGTTTCAATTTACATATTCAAATTGTCCCATTTTTTTGTGCAGTCACCACAGATCACTAACCTTACGGTCCGTGACATGTTTCTCGTGTTCGATGTAACACTGTCCGAACTCGCTTTTGAATGTGGCACATGTGGCCGCCAGAAGCATCTTCTCGCGAACCGGAGCACGATCGTCGACGAATCTGCAACAAAAAACAAGATCGTTAGTTTTCTGTCAAGAAACATGTGCGGTCCATGAAATTTGTAAGAATTCATTCGRGTGTCGTGTCCTTTAAAAATTCGAAACATGTGTGCACATTTTTCAAAAAATTCATTAATCTTGTTTGTTATCGAAATTGAGATCGATTATGATAGAGTTGTTTTTTAGAACATGTTCAGAAAAGCCAGAATTTTGATCAGTCCATTCTAAAATTCCAAATTAGAAAAAGCAAAATAGTCATTTTTCAAGCACCCTAACATGAATTCCAAAACTTACGTTATCAAAACCCATTCAGTGATTGTATTCAAACGGAACAAGATGAAGCATGGCTCATATGCATCCACACATTCCGGTAGACACGCTTTCCAATCATCACGCCAGTTGGCAGTTCCAGCGAACTCGTAGTTTGGCGTCATCTCCTCATTATTCACGACAATCTTGATGAGCCGCAGTTTGGCCTGTTTTCCCAAGTTGAGTGCATTTCGAAGTGCGGCGTTTGCTGCAAAACGTCTCCATTTTAGTGGTGTTGCTCGTCATTTCTGTTTCCCCTTCTATTCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGTAACACTGTCCGAACTC</pcr_primer_p1>
		<pcr_primer_p2>CAATTTCGATAACAAACAAGATT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GATGTAACACTGTCCGAACTCGCTTTTGAATGTGGCACATGTGGCCGCCAGAAGCATCTTCTCGCGAACCGGAGCACGATCGTCGACGAATCTGCAACAAAAAACAAGATCGTTAGTTTTCTGTCAAGAAACATGTGCGGTCCATGAAATTTGTAAGAATTCATTCGGGTGTCGTGTCCTTTAAAAATTCGAAACATGTGTGCACATTTTTCAAAAAATTCATTAATCTTGTTTGTTATCGAAATTG</canonical_amplicon>
		<polymorphic_amplicon>GATGTAACACTGTCCGAACTCGCTTTTGAATGTGGCACATGTGGCCGCCAGAAGCATCTTCTCGCGAACCGGAGCACGATCGTCGACGAATCTGCAACAAAAAACAAGATCGTTAGTTTTCTGTCAAGAAACATGTGCGGTCCATGAAATTTGTAAGAATTCATTCGRGTGTCGTGTCCTTTAAAAATTCGAAACATGTGTGCACATTTTTCAAAAAATTCATTAATCTTGTTTGTTATCGAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21766</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1145235</contig_pos>
        <strand>+</strand>
        <context>TTATCCCTTC[A/G]GGCCTCATGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGCGATCGGATCATGAGTGTATGAGCAATGTGTGTAATTTTATCCCTTC</left_flank>
        <right_flank>GGCCTCATGAACCCCTATATCAGGATCCTCATCATTGTTTCGGAACCCTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCCAAAAGAATTGATGTTGTATAGTTTTGTGGGGTGTCTGGAGAAGAAGCTTTCAAGAAGGCAGAGTATCTTAGTAGTCCCTTTTCAGTATGTCTTACAGATATCCAAAATGTATATAAAACATCGGGCTGCTCTGTTTCCTGGGAGAGAGAGGGTAGCTCGCGGGATAAAACACACTATTTGCCGGGACTTTCAGTTTGTTTTCGCCTGTTGCGTTCGCTCCAATGGAGAGTCTCTAACCGTAAGTGCACTATTTCTCTCCTCGTTCACCGGGCAGGTTTTCATTATTAACGGAATGCACCTCCCTCCACAAACGGCCGTGGCGAGGATAGATAGAAATACACGGGTCTCGGGATTTGGAATTGTAGGGAAACGAAGAGGAGGATGAAATCAAAAGCTCGTTCGGGTTTTTGTCCATTATTATCCACCACACTCATTGTCAACATTGAAGCGATCGGATCATGAGTGTATGAGCAATGTGTGTAATTTTATCCCTTCGGGCCTCATGAACCCCTATATCAGGATCCTCATCATTGTTTCGGAACCCTTTCCCTCTCTCAGAAACGAAATGAGAGAAGAATGGAGAAAACGATGAAGAATCGCGTCAAGGTTATGTATATAGTCGTGAAACGACTGTGTGGTGAGATGAAGACGGTGTTCACTTTACTAAAACCTCCCATTGAGAATTTGAATAGAATCGAACGATTAGGGATGGAATAATCCACAAAGAAGGTCAGAAAAGAGATTATACCTTTGGAATTTGTTGGAGAAGGTGGAATACTGGAAATTTGGGAGGAATCAATTTGGGAGGAATCAATTAGGGAAGAATCGGAGTTTGATTCCATGTTGGGGCGAAAAAAGGTTAGATTCGTTTTTGAAATGGTTCTCATGTTTGGACACAGCCAAAAAAGGCGGAATAACCAGTCGAGAACTCAAATATTGGCTATCACTTAACCCTCGCCGCAACCCCAATATTTTTTCTCGCGCCGAAACGTTACT</canonical>
            <polymorphic>TCCCAAAAGAATTGATGTTGTATAGTTTTGTGGGGTGTCTGGAGAAGAAGCTTTCAAGAAGGCAGAGTATCTTAGTAGTCCCTTTTCAGTATGTCTTACAGATATCCAAAATGTATATAAAACATCGGGCTGCTCTGTTTCCTGGGAGAGAGAGGGTAGCTCGCGGGATAAAACACACTATTTGCCGGGACTTTCAGTTTGTTTTCGCCTGTTGCGTTCGCTCCAATGGAGAGTCTCTAACCGTAAGTGCACTATTTCTCTCCTCGTTCACCGGGCAGGTTTTCATTATTAACGGAATGCACCTCCCTCCACAAACGGCCGTGGCGAGGATAGATAGAAATACACGGGTCTCGGGATTTGGAATTGTAGGGAAACGAAGAGGAGGATGAAATCAAAAGCTCGTTCGGGTTTTTGTCCATTATTATCCACCACACTCATTGTCAACATTGAAGCGATCGGATCATGAGTGTATGAGCAATGTGTGTAATTTTATCCCTTCRGGCCTCATGAACCCCTATATCAGGATCCTCATCATTGTTTCGGAACCCTTTCCCTCTCTCAGAAACGAAATGAGAGAAGAATGGAGAAAACGATGAAGAATCGCGTCAAGGTTATGTATATAGTCGTGAAACGACTGTGTGGTGAGATGAAGACGGTGTTCACTTTACTAAAACCTCCCATTGAGAATTTGAATAGAATCGAACGATTAGGGATGGAATAATCCACAAAGAAGGTCAGAAAAGAGATTATACCTTTGGAATTTGTTGGAGAAGGTGGAATACTGGAAATTTGGGAGGAATCAATTTGGGAGGAATCAATTAGGGAAGAATCGGAGTTTGATTCCATGTTGGGGCGAAAAAAGGTTAGATTCGTTTTTGAAATGGTTCTCATGTTTGGACACAGCCAAAAAAGGCGGAATAACCAGTCGAGAACTCAAATATTGGCTATCACTTAACCCTCGCCGCAACCCCAATATTTTTTCTCGCGCCGAAACGTTACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATAGATAGAAATACACGGGTCTC</pcr_primer_p1>
		<pcr_primer_p2>CTTCTCTCATTTCGTTTCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GATAGATAGAAATACACGGGTCTCGGGATTTGGAATTGTAGGGAAACGAAGAGGAGGATGAAATCAAAAGCTCGTTCGGGTTTTTGTCCATTATTATCCACCACACTCATTGTCAACATTGAAGCGATCGGATCATGAGTGTATGAGCAATGTGTGTAATTTTATCCCTTCGGGCCTCATGAACCCCTATATCAGGATCCTCATCATTGTTTCGGAACCCTTTCCCTCTCTCAGAAACGAAATGAGAGAAG</canonical_amplicon>
		<polymorphic_amplicon>GATAGATAGAAATACACGGGTCTCGGGATTTGGAATTGTAGGGAAACGAAGAGGAGGATGAAATCAAAAGCTCGTTCGGGTTTTTGTCCATTATTATCCACCACACTCATTGTCAACATTGAAGCGATCGGATCATGAGTGTATGAGCAATGTGTGTAATTTTATCCCTTCRGGCCTCATGAACCCCTATATCAGGATCCTCATCATTGTTTCGGAACCCTTTCCCTCTCTCAGAAACGAAATGAGAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21767</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1215930</contig_pos>
        <strand>+</strand>
        <context>CCACCGAGAA[A/G]ATAGTGCACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTTCACAATGTAACACTAAAACGGATGCCTCTGACGGCCCACCGAGAA</left_flank>
        <right_flank>ATAGTGCACATGAAATGAGAGACACAGACGAAAGGCGTAGGAGAAGAAGG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATTTTACTTCTCAATATCGCAGATAATTTGTTGATCGCAGCTGGAGAGACCGCAGAGAACCCGAAATCTTTGACGATGCTCTTGCAAGAGTCTTGCAATTTGAGAACAGCGAACTGATGACCCGATATAAGTTTCTTACTGTCCATTTGGAAAAGCTGAAAAATGAAAATACTAAGTATAAGCTTTAATTGAAATTTACATTTGAATTGAAGCAAAAAAAAACATGATTTAAGAAAAATACCTTTCTCCGCCTAGCCACTTCATAGTTAAATCTTCTATGACGTTTTCTGCTCCATTTCATCTTTCTTCCTCACTCTCATATTTTTGTACCAGTACTGCCAGAATTTTGGAAGCTAGGAATATAGAGATGATGATTCACGGAAAAATTTCCTTATTTCAAGTCAAAAATATTCAGAATACAGTTGAGCGCGTTTGCAACAAAATTTTCTTTTCACAATGTAACACTAAAACGGATGCCTCTGACGGCCCACCGAGAAAATAGTGCACATGAAATGAGAGACACAGACGAAAGGCGTAGGAGAAGAAGGGCGATGGGAGAATGGTAGATTGTATGTGTATGTTGAAGGTATGCGCGCTGTGTGAGCGACCTTTGCCGGGGGTAAAGGAGGCCAAACGATGAGAGACAAAGATATAGTTTATATTATTAGAGAGACGCAGCGAAAGAGCGGCGAGCACAGTAAATGACTAATCAATGCAGTTTTGTGTTGAGAACATAGGTCGTTGAAAACCATTGGAGCAACTCAAATCGAGGAAGCTATTTTTGACGAAAGAAAACCAGTTTTCAAAATTGGAGTTTTAGTGTACTACTTTTGAATACCGGATTCCTACAAACAAGAACTAAAATTTCAATCCTTCCTAAGTTTCGAAAATCAAATTATCAACATTTTTCATGCTACCGAAAACATGTGCTTTTTGTCAAAGATATTTTGGGAATTCCCAGCAAAAAATGCTACAAAAAATGAATGTAAACGACTATT</canonical>
            <polymorphic>TCATTTTACTTCTCAATATCGCAGATAATTTGTTGATCGCAGCTGGAGAGACCGCAGAGAACCCGAAATCTTTGACGATGCTCTTGCAAGAGTCTTGCAATTTGAGAACAGCGAACTGATGACCCGATATAAGTTTCTTACTGTCCATTTGGAAAAGCTGAAAAATGAAAATACTAAGTATAAGCTTTAATTGAAATTTACATTTGAATTGAAGCAAAAAAAAACATGATTTAAGAAAAATACCTTTCTCCGCCTAGCCACTTCATAGTTAAATCTTCTATGACGTTTTCTGCTCCATTTCATCTTTCTTCCTCACTCTCATATTTTTGTACCAGTACTGCCAGAATTTTGGAAGCTAGGAATATAGAGATGATGATTCACGGAAAAATTTCCTTATTTCAAGTCAAAAATATTCAGAATACAGTTGAGCGCGTTTGCAACAAAATTTTCTTTTCACAATGTAACACTAAAACGGATGCCTCTGACGGCCCACCGAGAARATAGTGCACATGAAATGAGAGACACAGACGAAAGGCGTAGGAGAAGAAGGGCGATGGGAGAATGGTAGATTGTATGTGTATGTTGAAGGTATGCGCGCTGTGTGAGCGACCTTTGCCGGGGGTAAAGGAGGCCAAACGATGAGAGACAAAGATATAGTTTATATTATTAGAGAGACGCAGCGAAAGAGCGGCGAGCACAGTAAATGACTAATCAATGCAGTTTTGTGTTGAGAACATAGGTCGTTGAAAACCATTGGAGCAACTCAAATCGAGGAAGCTATTTTTGACGAAAGAAAACCAGTTTTCAAAATTGGAGTTTTAGTGTACTACTTTTGAATACCGGATTCCTACAAACAAGAACTAAAATTTCAATCCTTCCTAAGTTTCGAAAATCAAATTATCAACATTTTTCATGCTACCGAAAACATGTGCTTTTTGTCAAAGATATTTTGGGAATTCCCAGCAAAAAATGCTACAAAAAATGAATGTAAACGACTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTTTGGAAGCTAGGAATATAG</pcr_primer_p1>
		<pcr_primer_p2>CATACCTTCAACATACACATACAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATTTTGGAAGCTAGGAATATAGAGATGATGATTCACGGAAAAATTTCCTTATTTCAAGTCAAAAATATTCAGAATACAGTTGAGCGCGTTTGCAACAAAATTTTCTTTTCACAATGTAACACTAAAACGGATGCCTCTGACGGCCCACCGAGAAAATAGTGCACATGAAATGAGAGACACAGACGAAAGGCGTAGGAGAAGAAGGGCGATGGGAGAATGGTAGATTGTATGTGTATGTTGAAGGTATG</canonical_amplicon>
		<polymorphic_amplicon>GAATTTTGGAAGCTAGGAATATAGAGATGATGATTCACGGAAAAATTTCCTTATTTCAAGTCAAAAATATTCAGAATACAGTTGAGCGCGTTTGCAACAAAATTTTCTTTTCACAATGTAACACTAAAACGGATGCCTCTGACGGCCCACCGAGAARATAGTGCACATGAAATGAGAGACACAGACGAAAGGCGTAGGAGAAGAAGGGCGATGGGAGAATGGTAGATTGTATGTGTATGTTGAAGGTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21768</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1218027</contig_pos>
        <strand>+</strand>
        <context>TAATGAAAAA[A/C]TCGAAAGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGGTAGGCTTGCATTATCCGAGAAAGTTCAGAGTTATAAATAATGAAAAA</left_flank>
        <right_flank>TCGAAAGAAAAGTCAGTTTTTTTTTCTCGAGCTAATTTTTGATTACAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGTCCTAGATTTTTTATTCTATCATTATTCGACAGATTCAATAAGAAAACGATTTATTCACAAAAACTACTATGTAAACAAGAACGGACACATATACAGTTTGAAAGTTTGAAAAACTAATTTTTCACTCGGAGGGAATTTCGCTTTGCCCACTTCACAACGGGTGACCTCGGCATCTTACGCTAACGAATAGTCACCATTACCGTTGAATGACAAATAGAACTCACACGTCTCCAGAAGTGAGGGAAAACCGCCTGGTTCAAGCTGTGTTGTTGACAAATAGGGTCTGGGATCTGGGAGAAGACAAAAATAATTTATATTTGGGAAAACGCATTTTTGCGTTACCAAAAGGATTCGTTATTTTCCTAGATAGATCAATGCAAAAGAACACTCCAGGGAATATCGAAAATGATTTGTTTCACTGAATCGGATATGAATAATTTTTTTTGGTAGGCTTGCATTATCCGAGAAAGTTCAGAGTTATAAATAATGAAAAACTCGAAAGAAAAGTCAGTTTTTTTTTCTCGAGCTAATTTTTGATTACAAAAAATTTACATACTTGGATTGTTCAATATCCTGTAATAAGTGAAGAATGGCCCCCACACTATGGCGCTTGAGCTGAATTTCCTGGCATCTCTGCACGATGTAAGAAATATATCTACTGATGAATTTTTTTCAACATTTAAGACAACTAATTTATCAGTGAGCCACATTTTTATATCTTTGACAGGAAAAAAAAAGTTACAGGGCCATTCTATGACGGGTTTAACGGCTAGCCCTTTGATATCTAGTCTCTTACAAAACGCAATTAAAGAGCGAAACCATAAATCTGAATGATTAGTGCTCTGGTGATGCAAGTATCTTTTAAAAATAGGATGTTTGAAACCAGAAGTGAGACGCCACGAGGAGTCGTCTTGACACCAAGCAACGGGACCAACATCACCACACACTACTAGTTTGCTAGACAGAGCAACACACATTTGAAATAGGAAAGTGGA</canonical>
            <polymorphic>AAGGTCCTAGATTTTTTATTCTATCATTATTCGACAGATTCAATAAGAAAACGATTTATTCACAAAAACTACTATGTAAACAAGAACGGACACATATACAGTTTGAAAGTTTGAAAAACTAATTTTTCACTCGGAGGGAATTTCGCTTTGCCCACTTCACAACGGGTGACCTCGGCATCTTACGCTAACGAATAGTCACCATTACCGTTGAATGACAAATAGAACTCACACGTCTCCAGAAGTGAGGGAAAACCGCCTGGTTCAAGCTGTGTTGTTGACAAATAGGGTCTGGGATCTGGGAGAAGACAAAAATAATTTATATTTGGGAAAACGCATTTTTGCGTTACCAAAAGGATTCGTTATTTTCCTAGATAGATCAATGCAAAAGAACACTCCAGGGAATATCGAAAATGATTTGTTTCACTGAATCGGATATGAATAATTTTTTTTGGTAGGCTTGCATTATCCGAGAAAGTTCAGAGTTATAAATAATGAAAAAMTCGAAAGAAAAGTCAGTTTTTTTTTCTCGAGCTAATTTTTGATTACAAAAAATTTACATACTTGGATTGTTCAATATCCTGTAATAAGTGAAGAATGGCCCCCACACTATGGCGCTTGAGCTGAATTTCCTGGCATCTCTGCACGATGTAAGAAATATATCTACTGATGAATTTTTTTCAACATTTAAGACAACTAATTTATCAGTGAGCCACATTTTTATATCTTTGACAGGAAAAAAAAAGTTACAGGGCCATTCTATGACGGGTTTAACGGCTAGCCCTTTGATATCTAGTCTCTTACAAAACGCAATTAAAGAGCGAAACCATAAATCTGAATGATTAGTGCTCTGGTGATGCAAGTATCTTTTAAAAATAGGATGTTTGAAACCAGAAGTGAGACGCCACGAGGAGTCGTCTTGACACCAAGCAACGGGACCAACATCACCACACACTACTAGTTTGCTAGACAGAGCAACACACATTTGAAATAGGAAAGTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGGTAGGCTTGCATTATC</pcr_primer_p1>
		<pcr_primer_p2>TTGCGTTTTGTAAGAGACTAGAT</pcr_primer_p2>
		<pcr_amplicon_size>363</pcr_amplicon_size>
		<canonical_amplicon>TTTGGTAGGCTTGCATTATCCGAGAAAGTTCAGAGTTATAAATAATGAAAAACTCGAAAGAAAAGTCAGTTTTTTTTTCTCGAGCTAATTTTTGATTACAAAAAATTTACATACTTGGATTGTTCAATATCCTGTAATAAGTGAAGAATGGCCCCCACACTATGGCGCTTGAGCTGAATTTCCTGGCATCTCTGCACGATGTAAGAAATATATCTACTGATGAATTTTTTTCAACATTTAAGACAACTAATTTATCAGTGAGCCACATTTTTATATCTTTGACAGGAAAAAAAAAGTTACAGGGCCATTCTATGACGGGTTTAACGGCTAGCCCTTTGATATCTAGTCTCTTACAAAACGCAA</canonical_amplicon>
		<polymorphic_amplicon>TTTGGTAGGCTTGCATTATCCGAGAAAGTTCAGAGTTATAAATAATGAAAAAMTCGAAAGAAAAGTCAGTTTTTTTTTCTCGAGCTAATTTTTGATTACAAAAAATTTACATACTTGGATTGTTCAATATCCTGTAATAAGTGAAGAATGGCCCCCACACTATGGCGCTTGAGCTGAATTTCCTGGCATCTCTGCACGATGTAAGAAATATATCTACTGATGAATTTTTTTCAACATTTAAGACAACTAATTTATCAGTGAGCCACATTTTTATATCTTTGACAGGAAAAAAAAAGTTACAGGGCCATTCTATGACGGGTTTAACGGCTAGCCCTTTGATATCTAGTCTCTTACAAAACGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21769</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1218079</contig_pos>
        <strand></strand>
        <context>ATTACAAAAA[A/T]TTTACATACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGAAAGAAAAGTCAGTTTTTTTTTCTCGAGCTAATTTTTGATTACAAAAA</left_flank>
        <right_flank>TTTACATACTTGGATTGTTCAATATCCTGTAATAAGTGAAGAATGGCCCC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTATTCACAAAAACTACTATGTAAACAAGAACGGACACATATACAGTTTGAAAGTTTGAAAAACTAATTTTTCACTCGGAGGGAATTTCGCTTTGCCCACTTCACAACGGGTGACCTCGGCATCTTACGCTAACGAATAGTCACCATTACCGTTGAATGACAAATAGAACTCACACGTCTCCAGAAGTGAGGGAAAACCGCCTGGTTCAAGCTGTGTTGTTGACAAATAGGGTCTGGGATCTGGGAGAAGACAAAAATAATTTATATTTGGGAAAACGCATTTTTGCGTTACCAAAAGGATTCGTTATTTTCCTAGATAGATCAATGCAAAAGAACACTCCAGGGAATATCGAAAATGATTTGTTTCACTGAATCGGATATGAATAATTTTTTTTGGTAGGCTTGCATTATCCGAGAAAGTTCAGAGTTATAAATAATGAAAAACTCGAAAGAAAAGTCAGTTTTTTTTTCTCGAGCTAATTTTTGATTACAAAAAATTTACATACTTGGATTGTTCAATATCCTGTAATAAGTGAAGAATGGCCCCCACACTATGGCGCTTGAGCTGAATTTCCTGGCATCTCTGCACGATGTAAGAAATATATCTACTGATGAATTTTTTTCAACATTTAAGACAACTAATTTATCAGTGAGCCACATTTTTATATCTTTGACAGGAAAAAAAAAGTTACAGGGCCATTCTATGACGGGTTTAACGGCTAGCCCTTTGATATCTAGTCTCTTACAAAACGCAATTAAAGAGCGAAACCATAAATCTGAATGATTAGTGCTCTGGTGATGCAAGTATCTTTTAAAAATAGGATGTTTGAAACCAGAAGTGAGACGCCACGAGGAGTCGTCTTGACACCAAGCAACGGGACCAACATCACCACACACTACTAGTTTGCTAGACAGAGCAACACACATTTGAAATAGGAAAGTGGACAAAAAACTTAAAAGGCAAAATTTGTACTGAACGAAAAAGTGCATTCGAATT</canonical>
            <polymorphic>GATTTATTCACAAAAACTACTATGTAAACAAGAACGGACACATATACAGTTTGAAAGTTTGAAAAACTAATTTTTCACTCGGAGGGAATTTCGCTTTGCCCACTTCACAACGGGTGACCTCGGCATCTTACGCTAACGAATAGTCACCATTACCGTTGAATGACAAATAGAACTCACACGTCTCCAGAAGTGAGGGAAAACCGCCTGGTTCAAGCTGTGTTGTTGACAAATAGGGTCTGGGATCTGGGAGAAGACAAAAATAATTTATATTTGGGAAAACGCATTTTTGCGTTACCAAAAGGATTCGTTATTTTCCTAGATAGATCAATGCAAAAGAACACTCCAGGGAATATCGAAAATGATTTGTTTCACTGAATCGGATATGAATAATTTTTTTTGGTAGGCTTGCATTATCCGAGAAAGTTCAGAGTTATAAATAATGAAAAACTCGAAAGAAAAGTCAGTTTTTTTTTCTCGAGCTAATTTTTGATTACAAAAAWTTTACATACTTGGATTGTTCAATATCCTGTAATAAGTGAAGAATGGCCCCCACACTATGGCGCTTGAGCTGAATTTCCTGGCATCTCTGCACGATGTAAGAAATATATCTACTGATGAATTTTTTTCAACATTTAAGACAACTAATTTATCAGTGAGCCACATTTTTATATCTTTGACAGGAAAAAAAAAGTTACAGGGCCATTCTATGACGGGTTTAACGGCTAGCCCTTTGATATCTAGTCTCTTACAAAACGCAATTAAAGAGCGAAACCATAAATCTGAATGATTAGTGCTCTGGTGATGCAAGTATCTTTTAAAAATAGGATGTTTGAAACCAGAAGTGAGACGCCACGAGGAGTCGTCTTGACACCAAGCAACGGGACCAACATCACCACACACTACTAGTTTGCTAGACAGAGCAACACACATTTGAAATAGGAAAGTGGACAAAAAACTTAAAAGGCAAAATTTGTACTGAACGAAAAAGTGCATTCGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>412 350 86 73 46 33</canonical_bands>
                <polymorphic_bands>485 350 86 46 33</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>211 175 127 113 93 73 68 46 29 26 18 17 4</canonical_bands>
                <polymorphic_bands>211 175 127 113 93 90 68 46 29 26 18 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATCCGAGAAAGTTCAGAGTTA</pcr_primer_p1>
		<pcr_primer_p2>TTGCGTTTTGTAAGAGACTAGAT</pcr_primer_p2>
		<pcr_amplicon_size>348</pcr_amplicon_size>
		<canonical_amplicon>TTATCCGAGAAAGTTCAGAGTTATAAATAATGAAAAACTCGAAAGAAAAGTCAGTTTTTTTTTCTCGAGCTAATTTTTGATTACAAAAAATTTACATACTTGGATTGTTCAATATCCTGTAATAAGTGAAGAATGGCCCCCACACTATGGCGCTTGAGCTGAATTTCCTGGCATCTCTGCACGATGTAAGAAATATATCTACTGATGAATTTTTTTCAACATTTAAGACAACTAATTTATCAGTGAGCCACATTTTTATATCTTTGACAGGAAAAAAAAAGTTACAGGGCCATTCTATGACGGGTTTAACGGCTAGCCCTTTGATATCTAGTCTCTTACAAAACGCAA</canonical_amplicon>
		<polymorphic_amplicon>TTATCCGAGAAAGTTCAGAGTTATAAATAATGAAAAACTCGAAAGAAAAGTCAGTTTTTTTTTCTCGAGCTAATTTTTGATTACAAAAAWTTTACATACTTGGATTGTTCAATATCCTGTAATAAGTGAAGAATGGCCCCCACACTATGGCGCTTGAGCTGAATTTCCTGGCATCTCTGCACGATGTAAGAAATATATCTACTGATGAATTTTTTTCAACATTTAAGACAACTAATTTATCAGTGAGCCACATTTTTATATCTTTGACAGGAAAAAAAAAGTTACAGGGCCATTCTATGACGGGTTTAACGGCTAGCCCTTTGATATCTAGTCTCTTACAAAACGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21770</snp_id>
        <super_contig>c013200948.Contig2</super_contig>
        <contig_pos>15093</contig_pos>
        <strand>+</strand>
        <context>TGTTTTTCGA[A/G]AAAGGCGTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTCAGCACCTGTTCCGCCATTCTATGTTCTTCAAGAACATGTTTTTCGA</left_flank>
        <right_flank>AAAGGCGTCCAAGAAGGTAATGAGGAAATGGTGGAGCTTAAGGAGGCGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTCTATTGTTATCTGAACTTTTTGAAGGAATTTTTTCTCCATTTTTTGAAATTCTATCACTTGGTTCTGAAAACCATCTGGAAATATTTTTTAAAACCTTTTTCCATCCGTCTTTCGTCCGCTTACGCCAATTTTCTTCAAAAAATCCCCAAATTTTTTCTCAATTTTTCAGAAATGCCACAGCCGAATGCTCGACAACGCGCCAGAAGGACCTCTGGTGCTCCGCAGCCGATGGATTTCACCGGAACGAAACCATCGCTGTCGGATGGCATAGTTTTGGTGGATGGCCAGAAATTTTACATTTCAAAGACGGTGAGTTTTTGAATTTTGACTTCTTTTCCGAAAAAAATAATATTGGAAATAGAGGTTTTTGGTGCCAATTTTCAGCCTTTTTTTTCTGAAAAACTGAAAATTTCAAAAAAAAAATTTCAAAAAATTCTGAAAACTTCAGCACCTGTTCCGCCATTCTATGTTCTTCAAGAACATGTTTTTCGAAAAAGGCGTCCAAGAAGGTAATGAGGAAATGGTGGAGCTTAAGGAGGCGACAGCAGAAGGATTCCAGATTTTTCTGGAACTTATTAATGGACAGAATCGATTATCAGGTGAGAAAATTTTAATGAAAAATGACTGAAAATCATGTAAAAAAGTTCAAAATGCATGGAAAAGGCTGAAAATGGCTGAAAATCATGAAAACCATCCAAAAAATCAATTTTTCCAGACGAGAATATAGAAGCTGTCACCAAGTGCTCCGCGATATGCCAGTCTGACATCCCCTCGAAAAAGTGTCTGAAATTTCTTCAAAAAAAGTCGAAGCTTTCGAAAACTGAGAAATTTTTGCTCGCCGATAAGCTGGACTTTATTGCTTTGAAGGTGAGCATTCGAAAAAAAAATGTATCATAACTTTTTAAAAATTGATGATAGAAGGCTGATTTTAATTTTGTTGAATTCAGCGTAAAAATTTAGTCTAGAGGATAATTAGGCCACATGAGACCCAAC</canonical>
            <polymorphic>AAATTTCTATTGTTATCTGAACTTTTTGAAGGAATTTTTTCTCCATTTTTTGAAATTCTATCACTTGGTTCTGAAAACCATCTGGAAATATTTTTTAAAACCTTTTTCCATCCGTCTTTCGTCCGCTTACGCCAATTTTCTTCAAAAAATCCCCAAATTTTTTCTCAATTTTTCAGAAATGCCACAGCCGAATGCTCGACAACGCGCCAGAAGGACCTCTGGTGCTCCGCAGCCGATGGATTTCACCGGAACGAAACCATCGCTGTCGGATGGCATAGTTTTGGTGGATGGCCAGAAATTTTACATTTCAAAGACGGTGAGTTTTTGAATTTTGACTTCTTTTCCGAAAAAAATAATATTGGAAATAGAGGTTTTTGGTGCCAATTTTCAGCCTTTTTTTTCTGAAAAACTGAAAATTTCAAAAAAAAAATTTCAAAAAATTCTGAAAACTTCAGCACCTGTTCCGCCATTCTATGTTCTTCAAGAACATGTTTTTCGARAAAGGCGTCCAAGAAGGTAATGAGGAAATGGTGGAGCTTAAGGAGGCGACAGCAGAAGGATTCCAGATTTTTCTGGAACTTATTAATGGACAGAATCGATTATCAGGTGAGAAAATTTTAATGAAAAATGACTGAAAATCATGTAAAAAAGTTCAAAATGCATGGAAAAGGCTGAAAATGGCTGAAAATCATGAAAACCATCCAAAAAATCAATTTTTCCAGACGAGAATATAGAAGCTGTCACCAAGTGCTCCGCGATATGCCAGTCTGACATCCCCTCGAAAAAGTGTCTGAAATTTCTTCAAAAAAAGTCGAAGCTTTCGAAAACTGAGAAATTTTTGCTCGCCGATAAGCTGGACTTTATTGCTTTGAAGGTGAGCATTCGAAAAAAAAATGTATCATAACTTTTTAAAAATTGATGATAGAAGGCTGATTTTAATTTTGTTGAATTCAGCGTAAAAATTTAGTCTAGAGGATAATTAGGCCACATGAGACCCAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>496 325 117 62</canonical_bands>
                <polymorphic_bands>821 117 62</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGAATTTTGACTTCTTTTC</pcr_primer_p1>
		<pcr_primer_p2>GAAAAATCTGGAATCCTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGAATTTTGACTTCTTTTCCGAAAAAAATAATATTGGAAATAGAGGTTTTTGGTGCCAATTTTCAGCCTTTTTTTTCTGAAAAACTGAAAATTTCAAAAAAAAAATTTCAAAAAATTCTGAAAACTTCAGCACCTGTTCCGCCATTCTATGTTCTTCAAGAACATGTTTTTCGAAAAAGGCGTCCAAGAAGGTAATGAGGAAATGGTGGAGCTTAAGGAGGCGACAGCAGAAGGATTCCAGATTTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGAATTTTGACTTCTTTTCCGAAAAAAATAATATTGGAAATAGAGGTTTTTGGTGCCAATTTTCAGCCTTTTTTTTCTGAAAAACTGAAAATTTCAAAAAAAAAATTTCAAAAAATTCTGAAAACTTCAGCACCTGTTCCGCCATTCTATGTTCTTCAAGAACATGTTTTTCGARAAAGGCGTCCAAGAAGGTAATGAGGAAATGGTGGAGCTTAAGGAGGCGACAGCAGAAGGATTCCAGATTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21771</snp_id>
        <super_contig>c013200948.Contig2</super_contig>
        <contig_pos>15132</contig_pos>
        <strand>+</strand>
        <context>TGGTGGAGCT[C/T]AAGGAGGCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGTTTTTCGAAAAAGGCGTCCAAGAAGGTAATGAGGAAATGGTGGAGCT</left_flank>
        <right_flank>AAGGAGGCGACAGCAGAAGGATTCCAGATTTTTCTGGAACTTATTAATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCCATTTTTTGAAATTCTATCACTTGGTTCTGAAAACCATCTGGAAATATTTTTTAAAACCTTTTTCCATCCGTCTTTCGTCCGCTTACGCCAATTTTCTTCAAAAAATCCCCAAATTTTTTCTCAATTTTTCAGAAATGCCACAGCCGAATGCTCGACAACGCGCCAGAAGGACCTCTGGTGCTCCGCAGCCGATGGATTTCACCGGAACGAAACCATCGCTGTCGGATGGCATAGTTTTGGTGGATGGCCAGAAATTTTACATTTCAAAGACGGTGAGTTTTTGAATTTTGACTTCTTTTCCGAAAAAAATAATATTGGAAATAGAGGTTTTTGGTGCCAATTTTCAGCCTTTTTTTTCTGAAAAACTGAAAATTTCAAAAAAAAAATTTCAAAAAATTCTGAAAACTTCAGCACCTGTTCCGCCATTCTATGTTCTTCAAGAACATGTTTTTCGAAAAAGGCGTCCAAGAAGGTAATGAGGAAATGGTGGAGCTTAAGGAGGCGACAGCAGAAGGATTCCAGATTTTTCTGGAACTTATTAATGGACAGAATCGATTATCAGGTGAGAAAATTTTAATGAAAAATGACTGAAAATCATGTAAAAAAGTTCAAAATGCATGGAAAAGGCTGAAAATGGCTGAAAATCATGAAAACCATCCAAAAAATCAATTTTTCCAGACGAGAATATAGAAGCTGTCACCAAGTGCTCCGCGATATGCCAGTCTGACATCCCCTCGAAAAAGTGTCTGAAATTTCTTCAAAAAAAGTCGAAGCTTTCGAAAACTGAGAAATTTTTGCTCGCCGATAAGCTGGACTTTATTGCTTTGAAGGTGAGCATTCGAAAAAAAAATGTATCATAACTTTTTAAAAATTGATGATAGAAGGCTGATTTTAATTTTGTTGAATTCAGCGTAAAAATTTAGTCTAGAGGATAATTAGGCCACATGAGACCCAACGAGACCAAACGAGACCAACACTCAATTTTTTAGGTCTCG</canonical>
            <polymorphic>TCTCCATTTTTTGAAATTCTATCACTTGGTTCTGAAAACCATCTGGAAATATTTTTTAAAACCTTTTTCCATCCGTCTTTCGTCCGCTTACGCCAATTTTCTTCAAAAAATCCCCAAATTTTTTCTCAATTTTTCAGAAATGCCACAGCCGAATGCTCGACAACGCGCCAGAAGGACCTCTGGTGCTCCGCAGCCGATGGATTTCACCGGAACGAAACCATCGCTGTCGGATGGCATAGTTTTGGTGGATGGCCAGAAATTTTACATTTCAAAGACGGTGAGTTTTTGAATTTTGACTTCTTTTCCGAAAAAAATAATATTGGAAATAGAGGTTTTTGGTGCCAATTTTCAGCCTTTTTTTTCTGAAAAACTGAAAATTTCAAAAAAAAAATTTCAAAAAATTCTGAAAACTTCAGCACCTGTTCCGCCATTCTATGTTCTTCAAGAACATGTTTTTCGAAAAAGGCGTCCAAGAAGGTAATGAGGAAATGGTGGAGCTYAAGGAGGCGACAGCAGAAGGATTCCAGATTTTTCTGGAACTTATTAATGGACAGAATCGATTATCAGGTGAGAAAATTTTAATGAAAAATGACTGAAAATCATGTAAAAAAGTTCAAAATGCATGGAAAAGGCTGAAAATGGCTGAAAATCATGAAAACCATCCAAAAAATCAATTTTTCCAGACGAGAATATAGAAGCTGTCACCAAGTGCTCCGCGATATGCCAGTCTGACATCCCCTCGAAAAAGTGTCTGAAATTTCTTCAAAAAAAGTCGAAGCTTTCGAAAACTGAGAAATTTTTGCTCGCCGATAAGCTGGACTTTATTGCTTTGAAGGTGAGCATTCGAAAAAAAAATGTATCATAACTTTTTAAAAATTGATGATAGAAGGCTGATTTTAATTTTGTTGAATTCAGCGTAAAAATTTAGTCTAGAGGATAATTAGGCCACATGAGACCCAACGAGACCAAACGAGACCAACACTCAATTTTTTAGGTCTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTTAAG</site>
                <isoschizomers>
                    <enzyme>AflII</enzyme>
                    <enzyme>BfrI</enzyme>
                    <enzyme>BspTI</enzyme>
                    <enzyme>Bst98I</enzyme>
                    <enzyme>MspCI</enzyme>
                    <enzyme>Vha464I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>443 291 103 56 45 35 27</canonical_bands>
                <polymorphic_bands>488 291 103 56 35 27</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAATATTGGAAATAGAGGTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>TCGATTCTGTCCATTAATAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATAATATTGGAAATAGAGGTTTTTGGTGCCAATTTTCAGCCTTTTTTTTCTGAAAAACTGAAAATTTCAAAAAAAAAATTTCAAAAAATTCTGAAAACTTCAGCACCTGTTCCGCCATTCTATGTTCTTCAAGAACATGTTTTTCGAAAAAGGCGTCCAAGAAGGTAATGAGGAAATGGTGGAGCTTAAGGAGGCGACAGCAGAAGGATTCCAGATTTTTCTGGAACTTATTAATGGACAGAATCGA</canonical_amplicon>
		<polymorphic_amplicon>ATAATATTGGAAATAGAGGTTTTTGGTGCCAATTTTCAGCCTTTTTTTTCTGAAAAACTGAAAATTTCAAAAAAAAAATTTCAAAAAATTCTGAAAACTTCAGCACCTGTTCCGCCATTCTATGTTCTTCAAGAACATGTTTTTCGAAAAAGGCGTCCAAGAAGGTAATGAGGAAATGGTGGAGCTYAAGGAGGCGACAGCAGAAGGATTCCAGATTTTTCTGGAACTTATTAATGGACAGAATCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21781</snp_id>
        <super_contig>c013200948.Contig2</super_contig>
        <contig_pos>16357</contig_pos>
        <strand></strand>
        <context>TCCCCTTATA[A/C]ATTTTTGTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATA</left_flank>
        <right_flank>ATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTGAAAACCAATGAGGACATGGATGGCCTGCTTCCACCGCTCGATCTCTCGGCTTTCAAGCCGAATACCGTGGAATTGATCGCCAAAAAGTCGCTGTCGATCAATGGAGTTGATCGTCCGCCACGTCCGATTGAAGCTCCTATGGGTTATCGTACTCAAAGAAACGGAGCATCTCCACAAGAAATGCGGGAAATTCTATACATTTTAGGAAGGCATATCAATCAACCATGGGCTCGAAGAATACGAGACGAGCGTAATCCACTGAATGACCACGACAACGAGCTCCTAACGGAGCTCAATAACATCCAACAGAAGATCCGTAATGGTCCCGCATACAGTTTATGGGGTCAAAGACGTCCTGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAA</canonical>
            <polymorphic>ATGTGAAAACCAATGAGGACATGGATGGCCTGCTTCCACCGCTCGATCTCTCGGCTTTCAAGCCGAATACCGTGGAATTGATCGCCAAAAAGTCGCTGTCGATCAATGGAGTTGATCGTCCGCCACGTCCGATTGAAGCTCCTATGGGTTATCGTACTCAAAGAAACGGAGCATCTCCACAAGAAATGCGGGAAATTCTATACATTTTAGGAAGGCATATCAATCAACCATGGGCTCGAAGAATACGAGACGAGCGTAATCCACTGAATGACCACGACAACGAGCTCCTAACGGAGCTCAATAACATCCAACAGAAGATCCGTAATGGTCCCGCATACAGTTTATGGGGTCAAAGACGTCCTGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAMATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>306 193 108 60 55 52 45 37 31 28 19 18 16 9 8 8 7</canonical_bands>
                <polymorphic_bands>351 193 108 60 55 52 37 31 28 19 18 16 9 8 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>306 118 108 75 55 52 49 45 37 28 22 19 18 11 11 9 9 8 8 7 5</canonical_bands>
                <polymorphic_bands>351 118 108 75 55 52 49 37 28 22 19 18 11 11 9 9 8 8 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACGTATGGATCAATGCTTAAC</pcr_primer_p1>
		<pcr_primer_p2>TTGTCAGAACCAAGTGATAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAA</canonical_amplicon>
		<polymorphic_amplicon>AACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAMATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21782</snp_id>
        <super_contig>c013200948.Contig2</super_contig>
        <contig_pos>16301</contig_pos>
        <strand></strand>
        <context>CGCAMGCTAT[G/A]GAGCTCCGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTAT</left_flank>
        <right_flank>GAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCC</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTCTCGTTTGACTAAATTAATGCCTTGACATTTTCAAGCGTTGGCTCCTCAGTGATGTGAAAACCAATGAGGACATGGATGGCCTGCTTCCACCGCTCGATCTCTCGGCTTTCAAGCCGAATACCGTGGAATTGATCGCCAAAAAGTCGCTGTCGATCAATGGAGTTGATCGTCCGCCACGTCCGATTGAAGCTCCTATGGGTTATCGTACTCAAAGAAACGGAGCATCTCCACAAGAAATGCGGGAAATTCTATACATTTTAGGAAGGCATATCAATCAACCATGGGCTCGAAGAATACGAGACGAGCGTAATCCACTGAATGACCACGACAACGAGCTCCTAACGGAGCTCAATAACATCCAACAGAAGATCCGTAATGGTCCCGCATACAGTTTATGGGGTCAAAGACGTCCTGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCC</canonical>
            <polymorphic>AGGTCTCGTTTGACTAAATTAATGCCTTGACATTTTCAAGCGTTGGCTCCTCAGTGATGTGAAAACCAATGAGGACATGGATGGCCTGCTTCCACCGCTCGATCTCTCGGCTTTCAAGCCGAATACCGTGGAATTGATCGCCAAAAAGTCGCTGTCGATCAATGGAGTTGATCGTCCGCCACGTCCGATTGAAGCTCCTATGGGTTATCGTACTCAAAGAAACGGAGCATCTCCACAAGAAATGCGGGAAATTCTATACATTTTAGGAAGGCATATCAATCAACCATGGGCTCGAAGAATACGAGACGAGCGTAATCCACTGAATGACCACGACAACGAGCTCCTAACGGAGCTCAATAACATCCAACAGAAGATCCGTAATGGTCCCGCATACAGTTTATGGGGTCAAAGACGTCCTGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATRGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCTAACGGAGCTCAATAAC</pcr_primer_p1>
		<pcr_primer_p2>AATGTGAAAAAGAGGAGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCCTAACGGAGCTCAATAACATCCAACAGAAGATCCGTAATGGTCCCGCATACAGTTTATGGGGTCAAAGACGTCCTGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATT</canonical_amplicon>
		<polymorphic_amplicon>CTCCTAACGGAGCTCAATAACATCCAACAGAAGATCCGTAATGGTCCCGCATACAGTTTATGGGGTCAAAGACGTCCTGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATRGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21783</snp_id>
        <super_contig>c013200948.Contig2</super_contig>
        <contig_pos>16295</contig_pos>
        <strand></strand>
        <context>GCCTTTCGCA[C/A]GCTATRGAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCA</left_flank>
        <right_flank>GCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAG</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAGTTAGGTCTCGTTTGACTAAATTAATGCCTTGACATTTTCAAGCGTTGGCTCCTCAGTGATGTGAAAACCAATGAGGACATGGATGGCCTGCTTCCACCGCTCGATCTCTCGGCTTTCAAGCCGAATACCGTGGAATTGATCGCCAAAAAGTCGCTGTCGATCAATGGAGTTGATCGTCCGCCACGTCCGATTGAAGCTCCTATGGGTTATCGTACTCAAAGAAACGGAGCATCTCCACAAGAAATGCGGGAAATTCTATACATTTTAGGAAGGCATATCAATCAACCATGGGCTCGAAGAATACGAGACGAGCGTAATCCACTGAATGACCACGACAACGAGCTCCTAACGGAGCTCAATAACATCCAACAGAAGATCCGTAATGGTCCCGCATACAGTTTATGGGGTCAAAGACGTCCTGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGA</canonical>
            <polymorphic>TTAGTTAGGTCTCGTTTGACTAAATTAATGCCTTGACATTTTCAAGCGTTGGCTCCTCAGTGATGTGAAAACCAATGAGGACATGGATGGCCTGCTTCCACCGCTCGATCTCTCGGCTTTCAAGCCGAATACCGTGGAATTGATCGCCAAAAAGTCGCTGTCGATCAATGGAGTTGATCGTCCGCCACGTCCGATTGAAGCTCCTATGGGTTATCGTACTCAAAGAAACGGAGCATCTCCACAAGAAATGCGGGAAATTCTATACATTTTAGGAAGGCATATCAATCAACCATGGGCTCGAAGAATACGAGACGAGCGTAATCCACTGAATGACCACGACAACGAGCTCCTAACGGAGCTCAATAACATCCAACAGAAGATCCGTAATGGTCCCGCATACAGTTTATGGGGTCAAAGACGTCCTGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCAMGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>298 118 107 93 84 62 54 51 36 33 32 11 11 5 3 2</canonical_bands>
                <polymorphic_bands>298 118 107 104 84 62 54 51 36 33 32 11 5 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCCTAACGGAGCTCAATAAC</pcr_primer_p1>
		<pcr_primer_p2>AATGTGAAAAAGAGGAGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCCTAACGGAGCTCAATAACATCCAACAGAAGATCCGTAATGGTCCCGCATACAGTTTATGGGGTCAAAGACGTCCTGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATT</canonical_amplicon>
		<polymorphic_amplicon>CTCCTAACGGAGCTCAATAACATCCAACAGAAGATCCGTAATGGTCCCGCATACAGTTTATGGGGTCAAAGACGTCCTGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCAMGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21784</snp_id>
        <super_contig>c013200948.Contig2</super_contig>
        <contig_pos>16283</contig_pos>
        <strand></strand>
        <context>GCTTAACAAC[A/G]CGCCTTTCGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAAC</left_flank>
        <right_flank>CGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTAC</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTTGTTGTGTTTAGTTAGGTCTCGTTTGACTAAATTAATGCCTTGACATTTTCAAGCGTTGGCTCCTCAGTGATGTGAAAACCAATGAGGACATGGATGGCCTGCTTCCACCGCTCGATCTCTCGGCTTTCAAGCCGAATACCGTGGAATTGATCGCCAAAAAGTCGCTGTCGATCAATGGAGTTGATCGTCCGCCACGTCCGATTGAAGCTCCTATGGGTTATCGTACTCAAAGAAACGGAGCATCTCCACAAGAAATGCGGGAAATTCTATACATTTTAGGAAGGCATATCAATCAACCATGGGCTCGAAGAATACGAGACGAGCGTAATCCACTGAATGACCACGACAACGAGCTCCTAACGGAGCTCAATAACATCCAACAGAAGATCCGTAATGGTCCCGCATACAGTTTATGGGGTCAAAGACGTCCTGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAAT</canonical>
            <polymorphic>ATCTTGTTGTGTTTAGTTAGGTCTCGTTTGACTAAATTAATGCCTTGACATTTTCAAGCGTTGGCTCCTCAGTGATGTGAAAACCAATGAGGACATGGATGGCCTGCTTCCACCGCTCGATCTCTCGGCTTTCAAGCCGAATACCGTGGAATTGATCGCCAAAAAGTCGCTGTCGATCAATGGAGTTGATCGTCCGCCACGTCCGATTGAAGCTCCTATGGGTTATCGTACTCAAAGAAACGGAGCATCTCCACAAGAAATGCGGGAAATTCTATACATTTTAGGAAGGCATATCAATCAACCATGGGCTCGAAGAATACGAGACGAGCGTAATCCACTGAATGACCACGACAACGAGCTCCTAACGGAGCTCAATAACATCCAACAGAAGATCCGTAATGGTCCCGCATACAGTTTATGGGGTCAAAGACGTCCTGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACRCGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>289 118 107 93 84 63 54 51 36 33 32 11 11 11 5 2</canonical_bands>
                <polymorphic_bands>289 118 107 93 84 63 54 51 43 36 33 11 11 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCCTAACGGAGCTCAATAAC</pcr_primer_p1>
		<pcr_primer_p2>AATGTGAAAAAGAGGAGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCCTAACGGAGCTCAATAACATCCAACAGAAGATCCGTAATGGTCCCGCATACAGTTTATGGGGTCAAAGACGTCCTGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATT</canonical_amplicon>
		<polymorphic_amplicon>CTCCTAACGGAGCTCAATAACATCCAACAGAAGATCCGTAATGGTCCCGCATACAGTTTATGGGGTCAAAGACGTCCTGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACRCGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21785</snp_id>
        <super_contig>c013200948.Contig2</super_contig>
        <contig_pos>16533</contig_pos>
        <strand></strand>
        <context>CTCTATTTTT[C/A]AATTTTCCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTT</left_flank>
        <right_flank>AATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACAAGAAATGCGGGAAATTCTATACATTTTAGGAAGGCATATCAATCAACCATGGGCTCGAAGAATACGAGACGAGCGTAATCCACTGAATGACCACGACAACGAGCTCCTAACGGAGCTCAATAACATCCAACAGAAGATCCGTAATGGTCCCGCATACAGTTTATGGGGTCAAAGACGTCCTGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAAAATCTGAAAATCTTGAAAATCTAGTTTTCTGTAAATTCCGAAATTCAAAAATCCATAAGTTTGAAAAATCCAAAAAATCCCAACATCAAGGTTTTCAAAAGTTTTTAAATTTTAAAAAAAAATTATTTTTTGGTTTTTTTTTTCAAATTTCACTAATTTGATCCCAACCTTTTCCA</canonical>
            <polymorphic>CCACAAGAAATGCGGGAAATTCTATACATTTTAGGAAGGCATATCAATCAACCATGGGCTCGAAGAATACGAGACGAGCGTAATCCACTGAATGACCACGACAACGAGCTCCTAACGGAGCTCAATAACATCCAACAGAAGATCCGTAATGGTCCCGCATACAGTTTATGGGGTCAAAGACGTCCTGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTMAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAAAATCTGAAAATCTTGAAAATCTAGTTTTCTGTAAATTCCGAAATTCAAAAATCCATAAGTTTGAAAAATCCAAAAAATCCCAACATCAAGGTTTTCAAAAGTTTTTAAATTTTAAAAAAAAATTATTTTTTGGTTTTTTTTTTCAAATTTCACTAATTTGATCCCAACCTTTTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCTCCTCTTTTTCACATT</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAAACGGACAAAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTMAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21787</snp_id>
        <super_contig>c013200948.Contig2</super_contig>
        <contig_pos>16511</contig_pos>
        <strand></strand>
        <context>TCTGACAACC[G/A]GATGGAAATA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACC</left_flank>
        <right_flank>GATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTCAAAGAAACGGAGCATCTCCACAAGAAATGCGGGAAATTCTATACATTTTAGGAAGGCATATCAATCAACCATGGGCTCGAAGAATACGAGACGAGCGTAATCCACTGAATGACCACGACAACGAGCTCCTAACGGAGCTCAATAACATCCAACAGAAGATCCGTAATGGTCCCGCATACAGTTTATGGGGTCAAAGACGTCCTGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAAAATCTGAAAATCTTGAAAATCTAGTTTTCTGTAAATTCCGAAATTCAAAAATCCATAAGTTTGAAAAATCCAAAAAATCCCAACATCAAGGTTTTCAAAAGTTTTTAAATTTTAAAAAAAAATTATTTTTTGGTTTTTTTTTTCAAATTTCACT</canonical>
            <polymorphic>TACTCAAAGAAACGGAGCATCTCCACAAGAAATGCGGGAAATTCTATACATTTTAGGAAGGCATATCAATCAACCATGGGCTCGAAGAATACGAGACGAGCGTAATCCACTGAATGACCACGACAACGAGCTCCTAACGGAGCTCAATAACATCCAACAGAAGATCCGTAATGGTCCCGCATACAGTTTATGGGGTCAAAGACGTCCTGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCRGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAAAATCTGAAAATCTTGAAAATCTAGTTTTCTGTAAATTCCGAAATTCAAAAATCCATAAGTTTGAAAAATCCAAAAAATCCCAACATCAAGGTTTTCAAAAGTTTTTAAATTTTAAAAAAAAATTATTTTTTGGTTTTTTTTTTCAAATTTCACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 296 202</canonical_bands>
                <polymorphic_bands>704 296</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCTCCTCTTTTTCACATT</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAAACGGACAAAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCRGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21788</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>6063</contig_pos>
        <strand></strand>
        <context>ACACACCAAA[C/T]GCTTCTTAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGGGAAGAACGGAGTCGCGCCAATTAACACTAGTAAATACACACCAAA</left_flank>
        <right_flank>GCTTCTTAAGGATTATGTACTTTTGTAATGAATTCGTTGTTTTTTATTGT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTCCGACGAGTTGCCTGCATTTGGGATGCTCAGTGAACAAGTGCTATCATGACTATTGGCTGTGGTTCGAGCAGGTTTGTGATTAGATTGATATCAGTGATAAACAAAAAAAGATTTTTAGATCGGCTACTTCTCAATCGGCCTATCATCTGGGGTGTTATGCTTTCGACTGTTTGTCTGGAGTCGTCTTTCCAAGAATCAGACGAATAAAAGGATTTCTAGAGTAACTTGACGCAATAATTGATACAAAAAATTGATGCAAAAAAAATTTTTTAGACCACTAGAATATCCCTATTGGATACTGTCATAATTTTCGCATTCGATATACTTCCCTCATTTCTGTTCACTCATTTTCCAGCTGTCAATTTTGAAACTGTTGGGCCATTGAGTGCGTTATGCAAGAACTTTGGATTTGTTATTGAGGCGATAATTATTTGTAAAGTTTTAATTGGGAAGAACGGAGTCGCGCCAATTAACACTAGTAAATACACACCAAACGCTTCTTAAGGATTATGTACTTTTGTAATGAATTCGTTGTTTTTTATTGTTTCGCACAATTTGAATTTTTCCGGTCGAAGATTTCTTACACGGGATCATGATTTTTTGGTCCGTCGTTTTTTTTTGGTTTGTGTTTTTTTCCTGTGCTTCTTAGATTAGATTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCCTCACGAGGAGCGCTTAATAAGTTAAAAAAAGAAGAATAATGGAAAAGGGAGGAATTATATACAGTAAAATACATGTGTTAAAAATAAGGATAATAGCTAGTAGCGAGAAATAGAAGAATCAAGGAGATTTTCAAATTGGGACGGGGTGAGGAAATGGGGTACATTGGCAGTTATGACTTTATTAAAACGCCACCCAATACGTTCTCATTTTTGAGCTTAATTATTTCGGTTCTTATAAAATTTCACATAAAAAAATGTGAACTGATAAAATATTCATCGTA</canonical>
            <polymorphic>TATTCCGACGAGTTGCCTGCATTTGGGATGCTCAGTGAACAAGTGCTATCATGACTATTGGCTGTGGTTCGAGCAGGTTTGTGATTAGATTGATATCAGTGATAAACAAAAAAAGATTTTTAGATCGGCTACTTCTCAATCGGCCTATCATCTGGGGTGTTATGCTTTCGACTGTTTGTCTGGAGTCGTCTTTCCAAGAATCAGACGAATAAAAGGATTTCTAGAGTAACTTGACGCAATAATTGATACAAAAAATTGATGCAAAAAAAATTTTTTAGACCACTAGAATATCCCTATTGGATACTGTCATAATTTTCGCATTCGATATACTTCCCTCATTTCTGTTCACTCATTTTCCAGCTGTCAATTTTGAAACTGTTGGGCCATTGAGTGCGTTATGCAAGAACTTTGGATTTGTTATTGAGGCGATAATTATTTGTAAAGTTTTAATTGGGAAGAACGGAGTCGCGCCAATTAACACTAGTAAATACACACCAAAYGCTTCTTAAGGATTATGTACTTTTGTAATGAATTCGTTGTTTTTTATTGTTTCGCACAATTTGAATTTTTCCGGTCGAAGATTTCTTACACGGGATCATGATTTTTTGGTCCGTCGTTTTTTTTTGGTTTGTGTTTTTTTCCTGTGCTTCTTAGATTAGATTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCCTCACGAGGAGCGCTTAATAAGTTAAAAAAAGAAGAATAATGGAAAAGGGAGGAATTATATACAGTAAAATACATGTGTTAAAAATAAGGATAATAGCTAGTAGCGAGAAATAGAAGAATCAAGGAGATTTTCAAATTGGGACGGGGTGAGGAAATGGGGTACATTGGCAGTTATGACTTTATTAAAACGCCACCCAATACGTTCTCATTTTTGAGCTTAATTATTTCGGTTCTTATAAAATTTCACATAAAAAAATGTGAACTGATAAAATATTCATCGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTGTTATTGAGGCGATAAT</pcr_primer_p1>
		<pcr_primer_p2>TAATCTAAGAAGCACAGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GATTTGTTATTGAGGCGATAATTATTTGTAAAGTTTTAATTGGGAAGAACGGAGTCGCGCCAATTAACACTAGTAAATACACACCAAACGCTTCTTAAGGATTATGTACTTTTGTAATGAATTCGTTGTTTTTTATTGTTTCGCACAATTTGAATTTTTCCGGTCGAAGATTTCTTACACGGGATCATGATTTTTTGGTCCGTCGTTTTTTTTTGGTTTGTGTTTTTTTCCTGTGCTTCTTAGATTA</canonical_amplicon>
		<polymorphic_amplicon>GATTTGTTATTGAGGCGATAATTATTTGTAAAGTTTTAATTGGGAAGAACGGAGTCGCGCCAATTAACACTAGTAAATACACACCAAAYGCTTCTTAAGGATTATGTACTTTTGTAATGAATTCGTTGTTTTTTATTGTTTCGCACAATTTGAATTTTTCCGGTCGAAGATTTCTTACACGGGATCATGATTTTTTGGTCCGTCGTTTTTTTTTGGTTTGTGTTTTTTTCCTGTGCTTCTTAGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21789</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>6109</contig_pos>
        <strand></strand>
        <context>GTTGTTTTTT[A/T]TTGTTTCGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAACGCTTCTTAAGGATTATGTACTTTTGTAATGAATTCGTTGTTTTTT</left_flank>
        <right_flank>TTGTTTCGCACAATTTGAATTTTTCCGGTCGAAGATTTCTTACACGGGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCATGACTATTGGCTGTGGTTCGAGCAGGTTTGTGATTAGATTGATATCAGTGATAAACAAAAAAAGATTTTTAGATCGGCTACTTCTCAATCGGCCTATCATCTGGGGTGTTATGCTTTCGACTGTTTGTCTGGAGTCGTCTTTCCAAGAATCAGACGAATAAAAGGATTTCTAGAGTAACTTGACGCAATAATTGATACAAAAAATTGATGCAAAAAAAATTTTTTAGACCACTAGAATATCCCTATTGGATACTGTCATAATTTTCGCATTCGATATACTTCCCTCATTTCTGTTCACTCATTTTCCAGCTGTCAATTTTGAAACTGTTGGGCCATTGAGTGCGTTATGCAAGAACTTTGGATTTGTTATTGAGGCGATAATTATTTGTAAAGTTTTAATTGGGAAGAACGGAGTCGCGCCAATTAACACTAGTAAATACACACCAAACGCTTCTTAAGGATTATGTACTTTTGTAATGAATTCGTTGTTTTTTATTGTTTCGCACAATTTGAATTTTTCCGGTCGAAGATTTCTTACACGGGATCATGATTTTTTGGTCCGTCGTTTTTTTTTGGTTTGTGTTTTTTTCCTGTGCTTCTTAGATTAGATTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCCTCACGAGGAGCGCTTAATAAGTTAAAAAAAGAAGAATAATGGAAAAGGGAGGAATTATATACAGTAAAATACATGTGTTAAAAATAAGGATAATAGCTAGTAGCGAGAAATAGAAGAATCAAGGAGATTTTCAAATTGGGACGGGGTGAGGAAATGGGGTACATTGGCAGTTATGACTTTATTAAAACGCCACCCAATACGTTCTCATTTTTGAGCTTAATTATTTCGGTTCTTATAAAATTTCACATAAAAAAATGTGAACTGATAAAATATTCATCGTATTATCAGCAACATTTTATCAGTTGACACCAGAGATGTCCGGATTCC</canonical>
            <polymorphic>TATCATGACTATTGGCTGTGGTTCGAGCAGGTTTGTGATTAGATTGATATCAGTGATAAACAAAAAAAGATTTTTAGATCGGCTACTTCTCAATCGGCCTATCATCTGGGGTGTTATGCTTTCGACTGTTTGTCTGGAGTCGTCTTTCCAAGAATCAGACGAATAAAAGGATTTCTAGAGTAACTTGACGCAATAATTGATACAAAAAATTGATGCAAAAAAAATTTTTTAGACCACTAGAATATCCCTATTGGATACTGTCATAATTTTCGCATTCGATATACTTCCCTCATTTCTGTTCACTCATTTTCCAGCTGTCAATTTTGAAACTGTTGGGCCATTGAGTGCGTTATGCAAGAACTTTGGATTTGTTATTGAGGCGATAATTATTTGTAAAGTTTTAATTGGGAAGAACGGAGTCGCGCCAATTAACACTAGTAAATACACACCAAACGCTTCTTAAGGATTATGTACTTTTGTAATGAATTCGTTGTTTTTTWTTGTTTCGCACAATTTGAATTTTTCCGGTCGAAGATTTCTTACACGGGATCATGATTTTTTGGTCCGTCGTTTTTTTTTGGTTTGTGTTTTTTTCCTGTGCTTCTTAGATTAGATTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCCTCACGAGGAGCGCTTAATAAGTTAAAAAAAGAAGAATAATGGAAAAGGGAGGAATTATATACAGTAAAATACATGTGTTAAAAATAAGGATAATAGCTAGTAGCGAGAAATAGAAGAATCAAGGAGATTTTCAAATTGGGACGGGGTGAGGAAATGGGGTACATTGGCAGTTATGACTTTATTAAAACGCCACCCAATACGTTCTCATTTTTGAGCTTAATTATTTCGGTTCTTATAAAATTTCACATAAAAAAATGTGAACTGATAAAATATTCATCGTATTATCAGCAACATTTTATCAGTTGACACCAGAGATGTCCGGATTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTGTTATTGAGGCGATAAT</pcr_primer_p1>
		<pcr_primer_p2>TAATCTAAGAAGCACAGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GATTTGTTATTGAGGCGATAATTATTTGTAAAGTTTTAATTGGGAAGAACGGAGTCGCGCCAATTAACACTAGTAAATACACACCAAACGCTTCTTAAGGATTATGTACTTTTGTAATGAATTCGTTGTTTTTTATTGTTTCGCACAATTTGAATTTTTCCGGTCGAAGATTTCTTACACGGGATCATGATTTTTTGGTCCGTCGTTTTTTTTTGGTTTGTGTTTTTTTCCTGTGCTTCTTAGATTA</canonical_amplicon>
		<polymorphic_amplicon>GATTTGTTATTGAGGCGATAATTATTTGTAAAGTTTTAATTGGGAAGAACGGAGTCGCGCCAATTAACACTAGTAAATACACACCAAACGCTTCTTAAGGATTATGTACTTTTGTAATGAATTCGTTGTTTTTTWTTGTTTCGCACAATTTGAATTTTTCCGGTCGAAGATTTCTTACACGGGATCATGATTTTTTGGTCCGTCGTTTTTTTTTGGTTTGTGTTTTTTTCCTGTGCTTCTTAGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21790</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>10642</contig_pos>
        <strand></strand>
        <context>TTTTGAAAGT[T/A]TGGAGTTGCC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GCAATTTTAAGAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGAAAGT</left_flank>
        <right_flank>TGGAGTTGCCGAATTTTTGGGAATTTGAGTTTTCAGAGTTTTTTTTTGGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAACGCGCAAGAGTTTTGCACGGGAAGCCAATCTTCGGATCCCTATTTTCTGATCATACCGGAGGCAGTTGCAATTTTGTCAAATGTTCTTGCATTTTTCCAATTTGGCAGACTTATGAGTATCAATCGGGTAATCCACAGTAATCTCAGAATTTCTTGTATAAGGTTATTTTTTCAGAAAATCCGAGTTGGAAGTAGCTCAAACAACTTGAGCCAGAAGTATCAAATCGAGGAAAATTTGAATGTTGTGAATATTTTAAGAGCGTTTACGAAGTGTGATTTTATATTTATTTTGATTTATTTCACAATGGGAATTCCGTTTCATTTGATTGGAAAGCATATGGATTCGGCAGAGTATTATGCTCTTTTTGAAGGTGAGCTCAGTTATTTAGGTCCTGCATTTTTGATAATTCGACCACAAGCTCAAGGGCAGAAAACCAAAGAAATGCAATTTTAAGAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGAAAGTTTGGAGTTGCCGAATTTTTGGGAATTTGAGTTTTCAGAGTTTTTTTTTGGGAAGTTTTGAATATTTTGATTTTTTGATTTTTATGTTACCGTAAAACCTGTAATAGAAGTGCCTCCTGACTTTCAACTTTGAGCTCAATTATCTCGGTTCCTGATAAAGATATCAAAAATGTGTCAACTGATAAATTGTTTATCATGATAGCAGCAACAATTTATTAGTTGACACATTTTTTACATCTTTATCAGGAACCGAGATAAATGGGCTCAAAGTTGAAAGTCAGGGGGCACTTCTATTACAGGTTTTACGGTAATTCAAACGTTTTTTTTTTAAATTTTCATAGTTTTCGATTTTGGAAGAAATTTTCAGAAATTTTTAGTGTATTTTTCAGATATTCTAAACCTGAATTTCAAAAATTTTGGAATCGAAATTTCAGGAATTTTTAGAAAATTTTGAATTTACCTCTCCTATTTTTTTGATGTTTGGAGTTTCGGATTTTTCGAA</canonical>
            <polymorphic>CAAAACGCGCAAGAGTTTTGCACGGGAAGCCAATCTTCGGATCCCTATTTTCTGATCATACCGGAGGCAGTTGCAATTTTGTCAAATGTTCTTGCATTTTTCCAATTTGGCAGACTTATGAGTATCAATCGGGTAATCCACAGTAATCTCAGAATTTCTTGTATAAGGTTATTTTTTCAGAAAATCCGAGTTGGAAGTAGCTCAAACAACTTGAGCCAGAAGTATCAAATCGAGGAAAATTTGAATGTTGTGAATATTTTAAGAGCGTTTACGAAGTGTGATTTTATATTTATTTTGATTTATTTCACAATGGGAATTCCGTTTCATTTGATTGGAAAGCATATGGATTCGGCAGAGTATTATGCTCTTTTTGAAGGTGAGCTCAGTTATTTAGGTCCTGCATTTTTGATAATTCGACCACAAGCTCAAGGGCAGAAAACCAAAGAAATGCAATTTTAAGAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGAAAGTWTGGAGTTGCCGAATTTTTGGGAATTTGAGTTTTCAGAGTTTTTTTTTGGGAAGTTTTGAATATTTTGATTTTTTGATTTTTATGTTACCGTAAAACCTGTAATAGAAGTGCCTCCTGACTTTCAACTTTGAGCTCAATTATCTCGGTTCCTGATAAAGATATCAAAAATGTGTCAACTGATAAATTGTTTATCATGATAGCAGCAACAATTTATTAGTTGACACATTTTTTACATCTTTATCAGGAACCGAGATAAATGGGCTCAAAGTTGAAAGTCAGGGGGCACTTCTATTACAGGTTTTACGGTAATTCAAACGTTTTTTTTTTAAATTTTCATAGTTTTCGATTTTGGAAGAAATTTTCAGAAATTTTTAGTGTATTTTTCAGATATTCTAAACCTGAATTTCAAAAATTTTGGAATCGAAATTTCAGGAATTTTTAGAAAATTTTGAATTTACCTCTCCTATTTTTTTGATGTTTGGAGTTTCGGATTTTTCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCCGTTTCATTTGATTG</pcr_primer_p1>
		<pcr_primer_p2>AAATATTCAAAACTTCCCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATTCCGTTTCATTTGATTGGAAAGCATATGGATTCGGCAGAGTATTATGCTCTTTTTGAAGGTGAGCTCAGTTATTTAGGTCCTGCATTTTTGATAATTCGACCACAAGCTCAAGGGCAGAAAACCAAAGAAATGCAATTTTAAGAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGAAAGTTTGGAGTTGCCGAATTTTTGGGAATTTGAGTTTTCAGAGTTTTTTTTTGGGAAGTTTTGAATATTT</canonical_amplicon>
		<polymorphic_amplicon>AATTCCGTTTCATTTGATTGGAAAGCATATGGATTCGGCAGAGTATTATGCTCTTTTTGAAGGTGAGCTCAGTTATTTAGGTCCTGCATTTTTGATAATTCGACCACAAGCTCAAGGGCAGAAAACCAAAGAAATGCAATTTTAAGAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGAAAGTWTGGAGTTGCCGAATTTTTGGGAATTTGAGTTTTCAGAGTTTTTTTTTGGGAAGTTTTGAATATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21791</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>10601</contig_pos>
        <strand>+</strand>
        <context>TGCAATTTTA[A/C]GAAATTCTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATAATTCGACCACAAGCTCAAGGGCAGAAAACCAAAGAAATGCAATTTTA</left_flank>
        <right_flank>GAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGAAAGTTTGGAGTTGC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGGCGCGACCACTTTTGCGATTTTTTACAAATTCGATTTTCAAAACGCGCAAGAGTTTTGCACGGGAAGCCAATCTTCGGATCCCTATTTTCTGATCATACCGGAGGCAGTTGCAATTTTGTCAAATGTTCTTGCATTTTTCCAATTTGGCAGACTTATGAGTATCAATCGGGTAATCCACAGTAATCTCAGAATTTCTTGTATAAGGTTATTTTTTCAGAAAATCCGAGTTGGAAGTAGCTCAAACAACTTGAGCCAGAAGTATCAAATCGAGGAAAATTTGAATGTTGTGAATATTTTAAGAGCGTTTACGAAGTGTGATTTTATATTTATTTTGATTTATTTCACAATGGGAATTCCGTTTCATTTGATTGGAAAGCATATGGATTCGGCAGAGTATTATGCTCTTTTTGAAGGTGAGCTCAGTTATTTAGGTCCTGCATTTTTGATAATTCGACCACAAGCTCAAGGGCAGAAAACCAAAGAAATGCAATTTTAAGAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGAAAGTTTGGAGTTGCCGAATTTTTGGGAATTTGAGTTTTCAGAGTTTTTTTTTGGGAAGTTTTGAATATTTTGATTTTTTGATTTTTATGTTACCGTAAAACCTGTAATAGAAGTGCCTCCTGACTTTCAACTTTGAGCTCAATTATCTCGGTTCCTGATAAAGATATCAAAAATGTGTCAACTGATAAATTGTTTATCATGATAGCAGCAACAATTTATTAGTTGACACATTTTTTACATCTTTATCAGGAACCGAGATAAATGGGCTCAAAGTTGAAAGTCAGGGGGCACTTCTATTACAGGTTTTACGGTAATTCAAACGTTTTTTTTTTAAATTTTCATAGTTTTCGATTTTGGAAGAAATTTTCAGAAATTTTTAGTGTATTTTTCAGATATTCTAAACCTGAATTTCAAAAATTTTGGAATCGAAATTTCAGGAATTTTTAGAAAATTTTGAATTTACC</canonical>
            <polymorphic>GCGGCGCGACCACTTTTGCGATTTTTTACAAATTCGATTTTCAAAACGCGCAAGAGTTTTGCACGGGAAGCCAATCTTCGGATCCCTATTTTCTGATCATACCGGAGGCAGTTGCAATTTTGTCAAATGTTCTTGCATTTTTCCAATTTGGCAGACTTATGAGTATCAATCGGGTAATCCACAGTAATCTCAGAATTTCTTGTATAAGGTTATTTTTTCAGAAAATCCGAGTTGGAAGTAGCTCAAACAACTTGAGCCAGAAGTATCAAATCGAGGAAAATTTGAATGTTGTGAATATTTTAAGAGCGTTTACGAAGTGTGATTTTATATTTATTTTGATTTATTTCACAATGGGAATTCCGTTTCATTTGATTGGAAAGCATATGGATTCGGCAGAGTATTATGCTCTTTTTGAAGGTGAGCTCAGTTATTTAGGTCCTGCATTTTTGATAATTCGACCACAAGCTCAAGGGCAGAAAACCAAAGAAATGCAATTTTAMGAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGAAAGTTTGGAGTTGCCGAATTTTTGGGAATTTGAGTTTTCAGAGTTTTTTTTTGGGAAGTTTTGAATATTTTGATTTTTTGATTTTTATGTTACCGTAAAACCTGTAATAGAAGTGCCTCCTGACTTTCAACTTTGAGCTCAATTATCTCGGTTCCTGATAAAGATATCAAAAATGTGTCAACTGATAAATTGTTTATCATGATAGCAGCAACAATTTATTAGTTGACACATTTTTTACATCTTTATCAGGAACCGAGATAAATGGGCTCAAAGTTGAAAGTCAGGGGGCACTTCTATTACAGGTTTTACGGTAATTCAAACGTTTTTTTTTTAAATTTTCATAGTTTTCGATTTTGGAAGAAATTTTCAGAAATTTTTAGTGTATTTTTCAGATATTCTAAACCTGAATTTCAAAAATTTTGGAATCGAAATTTCAGGAATTTTTAGAAAATTTTGAATTTACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>370 300 197 133</canonical_bands>
                <polymorphic_bands>567 300 133</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTCCGTTTCATTTGATTG</pcr_primer_p1>
		<pcr_primer_p2>AAATATTCAAAACTTCCCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATTCCGTTTCATTTGATTGGAAAGCATATGGATTCGGCAGAGTATTATGCTCTTTTTGAAGGTGAGCTCAGTTATTTAGGTCCTGCATTTTTGATAATTCGACCACAAGCTCAAGGGCAGAAAACCAAAGAAATGCAATTTTAAGAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGAAAGTTTGGAGTTGCCGAATTTTTGGGAATTTGAGTTTTCAGAGTTTTTTTTTGGGAAGTTTTGAATATTT</canonical_amplicon>
		<polymorphic_amplicon>AATTCCGTTTCATTTGATTGGAAAGCATATGGATTCGGCAGAGTATTATGCTCTTTTTGAAGGTGAGCTCAGTTATTTAGGTCCTGCATTTTTGATAATTCGACCACAAGCTCAAGGGCAGAAAACCAAAGAAATGCAATTTTAMGAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGAAAGTTTGGAGTTGCCGAATTTTTGGGAATTTGAGTTTTCAGAGTTTTTTTTTGGGAAGTTTTGAATATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21792</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>10587</contig_pos>
        <strand>+</strand>
        <context>GAAAACCAAA[G/T]AAATGCAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTCCTGCATTTTTGATAATTCGACCACAAGCTCAAGGGCAGAAAACCAAA</left_flank>
        <right_flank>AAATGCAATTTTAAGAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAATCTTCATGGGCGGCGCGACCACTTTTGCGATTTTTTACAAATTCGATTTTCAAAACGCGCAAGAGTTTTGCACGGGAAGCCAATCTTCGGATCCCTATTTTCTGATCATACCGGAGGCAGTTGCAATTTTGTCAAATGTTCTTGCATTTTTCCAATTTGGCAGACTTATGAGTATCAATCGGGTAATCCACAGTAATCTCAGAATTTCTTGTATAAGGTTATTTTTTCAGAAAATCCGAGTTGGAAGTAGCTCAAACAACTTGAGCCAGAAGTATCAAATCGAGGAAAATTTGAATGTTGTGAATATTTTAAGAGCGTTTACGAAGTGTGATTTTATATTTATTTTGATTTATTTCACAATGGGAATTCCGTTTCATTTGATTGGAAAGCATATGGATTCGGCAGAGTATTATGCTCTTTTTGAAGGTGAGCTCAGTTATTTAGGTCCTGCATTTTTGATAATTCGACCACAAGCTCAAGGGCAGAAAACCAAAGAAATGCAATTTTAAGAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGAAAGTTTGGAGTTGCCGAATTTTTGGGAATTTGAGTTTTCAGAGTTTTTTTTTGGGAAGTTTTGAATATTTTGATTTTTTGATTTTTATGTTACCGTAAAACCTGTAATAGAAGTGCCTCCTGACTTTCAACTTTGAGCTCAATTATCTCGGTTCCTGATAAAGATATCAAAAATGTGTCAACTGATAAATTGTTTATCATGATAGCAGCAACAATTTATTAGTTGACACATTTTTTACATCTTTATCAGGAACCGAGATAAATGGGCTCAAAGTTGAAAGTCAGGGGGCACTTCTATTACAGGTTTTACGGTAATTCAAACGTTTTTTTTTTAAATTTTCATAGTTTTCGATTTTGGAAGAAATTTTCAGAAATTTTTAGTGTATTTTTCAGATATTCTAAACCTGAATTTCAAAAATTTTGGAATCGAAATTTCAGGAATTTTTAGAAA</canonical>
            <polymorphic>ACAAATCTTCATGGGCGGCGCGACCACTTTTGCGATTTTTTACAAATTCGATTTTCAAAACGCGCAAGAGTTTTGCACGGGAAGCCAATCTTCGGATCCCTATTTTCTGATCATACCGGAGGCAGTTGCAATTTTGTCAAATGTTCTTGCATTTTTCCAATTTGGCAGACTTATGAGTATCAATCGGGTAATCCACAGTAATCTCAGAATTTCTTGTATAAGGTTATTTTTTCAGAAAATCCGAGTTGGAAGTAGCTCAAACAACTTGAGCCAGAAGTATCAAATCGAGGAAAATTTGAATGTTGTGAATATTTTAAGAGCGTTTACGAAGTGTGATTTTATATTTATTTTGATTTATTTCACAATGGGAATTCCGTTTCATTTGATTGGAAAGCATATGGATTCGGCAGAGTATTATGCTCTTTTTGAAGGTGAGCTCAGTTATTTAGGTCCTGCATTTTTGATAATTCGACCACAAGCTCAAGGGCAGAAAACCAAAKAAATGCAATTTTAAGAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGAAAGTTTGGAGTTGCCGAATTTTTGGGAATTTGAGTTTTCAGAGTTTTTTTTTGGGAAGTTTTGAATATTTTGATTTTTTGATTTTTATGTTACCGTAAAACCTGTAATAGAAGTGCCTCCTGACTTTCAACTTTGAGCTCAATTATCTCGGTTCCTGATAAAGATATCAAAAATGTGTCAACTGATAAATTGTTTATCATGATAGCAGCAACAATTTATTAGTTGACACATTTTTTACATCTTTATCAGGAACCGAGATAAATGGGCTCAAAGTTGAAAGTCAGGGGGCACTTCTATTACAGGTTTTACGGTAATTCAAACGTTTTTTTTTTAAATTTTCATAGTTTTCGATTTTGGAAGAAATTTTCAGAAATTTTTAGTGTATTTTTCAGATATTCTAAACCTGAATTTCAAAAATTTTGGAATCGAAATTTCAGGAATTTTTAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATATTTTAAGAGCGTTTACGA</pcr_primer_p1>
		<pcr_primer_p2>ACTTTCAAAAATTCCAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAATATTTTAAGAGCGTTTACGAAGTGTGATTTTATATTTATTTTGATTTATTTCACAATGGGAATTCCGTTTCATTTGATTGGAAAGCATATGGATTCGGCAGAGTATTATGCTCTTTTTGAAGGTGAGCTCAGTTATTTAGGTCCTGCATTTTTGATAATTCGACCACAAGCTCAAGGGCAGAAAACCAAAGAAATGCAATTTTAAGAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGAAAGT</canonical_amplicon>
		<polymorphic_amplicon>GAATATTTTAAGAGCGTTTACGAAGTGTGATTTTATATTTATTTTGATTTATTTCACAATGGGAATTCCGTTTCATTTGATTGGAAAGCATATGGATTCGGCAGAGTATTATGCTCTTTTTGAAGGTGAGCTCAGTTATTTAGGTCCTGCATTTTTGATAATTCGACCACAAGCTCAAGGGCAGAAAACCAAAKAAATGCAATTTTAAGAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21793</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>10559</contig_pos>
        <strand>+</strand>
        <context>TGATAATTCG[A/G]CCACAAGCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTTTGAAGGTGAGCTCAGTTATTTAGGTCCTGCATTTTTGATAATTCG</left_flank>
        <right_flank>CCACAAGCTCAAGGGCAGAAAACCAAAGAAATGCAATTTTAAGAAATTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACGTTGGGTTGCATGCTTATCCTGGGACAAATCTTCATGGGCGGCGCGACCACTTTTGCGATTTTTTACAAATTCGATTTTCAAAACGCGCAAGAGTTTTGCACGGGAAGCCAATCTTCGGATCCCTATTTTCTGATCATACCGGAGGCAGTTGCAATTTTGTCAAATGTTCTTGCATTTTTCCAATTTGGCAGACTTATGAGTATCAATCGGGTAATCCACAGTAATCTCAGAATTTCTTGTATAAGGTTATTTTTTCAGAAAATCCGAGTTGGAAGTAGCTCAAACAACTTGAGCCAGAAGTATCAAATCGAGGAAAATTTGAATGTTGTGAATATTTTAAGAGCGTTTACGAAGTGTGATTTTATATTTATTTTGATTTATTTCACAATGGGAATTCCGTTTCATTTGATTGGAAAGCATATGGATTCGGCAGAGTATTATGCTCTTTTTGAAGGTGAGCTCAGTTATTTAGGTCCTGCATTTTTGATAATTCGACCACAAGCTCAAGGGCAGAAAACCAAAGAAATGCAATTTTAAGAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGAAAGTTTGGAGTTGCCGAATTTTTGGGAATTTGAGTTTTCAGAGTTTTTTTTTGGGAAGTTTTGAATATTTTGATTTTTTGATTTTTATGTTACCGTAAAACCTGTAATAGAAGTGCCTCCTGACTTTCAACTTTGAGCTCAATTATCTCGGTTCCTGATAAAGATATCAAAAATGTGTCAACTGATAAATTGTTTATCATGATAGCAGCAACAATTTATTAGTTGACACATTTTTTACATCTTTATCAGGAACCGAGATAAATGGGCTCAAAGTTGAAAGTCAGGGGGCACTTCTATTACAGGTTTTACGGTAATTCAAACGTTTTTTTTTTAAATTTTCATAGTTTTCGATTTTGGAAGAAATTTTCAGAAATTTTTAGTGTATTTTTCAGATATTCTAAACCTGAATTTCAAAAATTTTG</canonical>
            <polymorphic>AAACGTTGGGTTGCATGCTTATCCTGGGACAAATCTTCATGGGCGGCGCGACCACTTTTGCGATTTTTTACAAATTCGATTTTCAAAACGCGCAAGAGTTTTGCACGGGAAGCCAATCTTCGGATCCCTATTTTCTGATCATACCGGAGGCAGTTGCAATTTTGTCAAATGTTCTTGCATTTTTCCAATTTGGCAGACTTATGAGTATCAATCGGGTAATCCACAGTAATCTCAGAATTTCTTGTATAAGGTTATTTTTTCAGAAAATCCGAGTTGGAAGTAGCTCAAACAACTTGAGCCAGAAGTATCAAATCGAGGAAAATTTGAATGTTGTGAATATTTTAAGAGCGTTTACGAAGTGTGATTTTATATTTATTTTGATTTATTTCACAATGGGAATTCCGTTTCATTTGATTGGAAAGCATATGGATTCGGCAGAGTATTATGCTCTTTTTGAAGGTGAGCTCAGTTATTTAGGTCCTGCATTTTTGATAATTCGRCCACAAGCTCAAGGGCAGAAAACCAAAGAAATGCAATTTTAAGAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGAAAGTTTGGAGTTGCCGAATTTTTGGGAATTTGAGTTTTCAGAGTTTTTTTTTGGGAAGTTTTGAATATTTTGATTTTTTGATTTTTATGTTACCGTAAAACCTGTAATAGAAGTGCCTCCTGACTTTCAACTTTGAGCTCAATTATCTCGGTTCCTGATAAAGATATCAAAAATGTGTCAACTGATAAATTGTTTATCATGATAGCAGCAACAATTTATTAGTTGACACATTTTTTACATCTTTATCAGGAACCGAGATAAATGGGCTCAAAGTTGAAAGTCAGGGGGCACTTCTATTACAGGTTTTACGGTAATTCAAACGTTTTTTTTTTAAATTTTCATAGTTTTCGATTTTGGAAGAAATTTTCAGAAATTTTTAGTGTATTTTTCAGATATTCTAAACCTGAATTTCAAAAATTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>367 237 184 77 73 62</canonical_bands>
                <polymorphic_bands>367 246 237 77 73</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATATTTTAAGAGCGTTTACGA</pcr_primer_p1>
		<pcr_primer_p2>ACTTTCAAAAATTCCAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAATATTTTAAGAGCGTTTACGAAGTGTGATTTTATATTTATTTTGATTTATTTCACAATGGGAATTCCGTTTCATTTGATTGGAAAGCATATGGATTCGGCAGAGTATTATGCTCTTTTTGAAGGTGAGCTCAGTTATTTAGGTCCTGCATTTTTGATAATTCGACCACAAGCTCAAGGGCAGAAAACCAAAGAAATGCAATTTTAAGAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGAAAGT</canonical_amplicon>
		<polymorphic_amplicon>GAATATTTTAAGAGCGTTTACGAAGTGTGATTTTATATTTATTTTGATTTATTTCACAATGGGAATTCCGTTTCATTTGATTGGAAAGCATATGGATTCGGCAGAGTATTATGCTCTTTTTGAAGGTGAGCTCAGTTATTTAGGTCCTGCATTTTTGATAATTCGRCCACAAGCTCAAGGGCAGAAAACCAAAGAAATGCAATTTTAAGAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21794</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>10302</contig_pos>
        <strand>+</strand>
        <context>YAGAATYTCT[A/T]GTATAAGGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCAGACTTATGAGTATCAATCGGGTAATCCACAGTAATCTCAGAATTTCT</left_flank>
        <right_flank>GTATAAGGTTATTTTTTCAGAAAATCCGAGTTGGAAGTAGCTCAAACAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCTTCCAACATGGTTCTGACCTATTTCTCTACTTTTCGCATATTCCAATTTGTGAAAAAGTTCCCAGTATCCAGAGGTACCTTTTTGACAACCACCCCTTCAAAATTTGGAGTCTAAATTTACCAATTTCCAGATGTCTCTCCACGCGAATCCCCTACATTTTCGGATTATTCTGCGCCAGCTACTCGACGGTTTTCATGGTTATCGAGCGAACGATAGCAACAAAAAGCTACAAAAAATACGAAAATCGTCACAAAACGTTGGGTTGCATGCTTATCCTGGGACAAATCTTCATGGGCGGCGCGACCACTTTTGCGATTTTTTACAAATTCGATTTTCAAAACGCGCAAGAGTTTTGCACGGGAAGCCAATCTTCGGATCCCTATTTTCTGATCATACCGGAGGCAGTTGCAATTTTGTCAAATGTTCTTGCATTTTTCCAATTTGGCAGACTTATGAGTATCAATCGGGTAATCCACAGTAATCTCAGAATTTCTTGTATAAGGTTATTTTTTCAGAAAATCCGAGTTGGAAGTAGCTCAAACAACTTGAGCCAGAAGTATCAAATCGAGGAAAATTTGAATGTTGTGAATATTTTAAGAGCGTTTACGAAGTGTGATTTTATATTTATTTTGATTTATTTCACAATGGGAATTCCGTTTCATTTGATTGGAAAGCATATGGATTCGGCAGAGTATTATGCTCTTTTTGAAGGTGAGCTCAGTTATTTAGGTCCTGCATTTTTGATAATTCGACCACAAGCTCAAGGGCAGAAAACCAAAGAAATGCAATTTTAAGAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGAAAGTTTGGAGTTGCCGAATTTTTGGGAATTTGAGTTTTCAGAGTTTTTTTTTGGGAAGTTTTGAATATTTTGATTTTTTGATTTTTATGTTACCGTAAAACCTGTAATAGAAGTGCCTCCTGACTTTCAACTTTGAGCTCAATTATCTCGGTTCCTGATAAAGAT</canonical>
            <polymorphic>AGTCTTCCAACATGGTTCTGACCTATTTCTCTACTTTTCGCATATTCCAATTTGTGAAAAAGTTCCCAGTATCCAGAGGTACCTTTTTGACAACCACCCCTTCAAAATTTGGAGTCTAAATTTACCAATTTCCAGATGTCTCTCCACGCGAATCCCCTACATTTTCGGATTATTCTGCGCCAGCTACTCGACGGTTTTCATGGTTATCGAGCGAACGATAGCAACAAAAAGCTACAAAAAATACGAAAATCGTCACAAAACGTTGGGTTGCATGCTTATCCTGGGACAAATCTTCATGGGCGGCGCGACCACTTTTGCGATTTTTTACAAATTCGATTTTCAAAACGCGCAAGAGTTTTGCACGGGAAGCCAATCTTCGGATCCCTATTTTCTGATCATACCGGAGGCAGTTGCAATTTTGTCAAATGTTCTTGCATTTTTCCAATTTGGCAGACTTATGAGTATCAATCGGGTAATCCACAGTAATCTCAGAATTTCTWGTATAAGGTTATTTTTTCAGAAAATCCGAGTTGGAAGTAGCTCAAACAACTTGAGCCAGAAGTATCAAATCGAGGAAAATTTGAATGTTGTGAATATTTTAAGAGCGTTTACGAAGTGTGATTTTATATTTATTTTGATTTATTTCACAATGGGAATTCCGTTTCATTTGATTGGAAAGCATATGGATTCGGCAGAGTATTATGCTCTTTTTGAAGGTGAGCTCAGTTATTTAGGTCCTGCATTTTTGATAATTCGACCACAAGCTCAAGGGCAGAAAACCAAAGAAATGCAATTTTAAGAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGAAAGTTTGGAGTTGCCGAATTTTTGGGAATTTGAGTTTTCAGAGTTTTTTTTTGGGAAGTTTTGAATATTTTGATTTTTTGATTTTTATGTTACCGTAAAACCTGTAATAGAAGTGCCTCCTGACTTTCAACTTTGAGCTCAATTATCTCGGTTCCTGATAAAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCCCTATTTTCTGATCATACC</pcr_primer_p1>
		<pcr_primer_p2>ACTTCGTAAACGCTCTTAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>GATCCCTATTTTCTGATCATACCGGAGGCAGTTGCAATTTTGTCAAATGTTCTTGCATTTTTCCAATTTGGCAGACTTATGAGTATCAATCGGGTAATCCACAGTAATCTCAGAATTTCTTGTATAAGGTTATTTTTTCAGAAAATCCGAGTTGGAAGTAGCTCAAACAACTTGAGCCAGAAGTATCAAATCGAGGAAAATTTGAATGTTGTGAATATTTTAAGAGCGTTTACGAAGT</canonical_amplicon>
		<polymorphic_amplicon>GATCCCTATTTTCTGATCATACCGGAGGCAGTTGCAATTTTGTCAAATGTTCTTGCATTTTTCCAATTTGGCAGACTTATGAGTATCAATCGGGTAATCCACAGTAATCTCAGAATTTCTWGTATAAGGTTATTTTTTCAGAAAATCCGAGTTGGAAGTAGCTCAAACAACTTGAGCCAGAAGTATCAAATCGAGGAAAATTTGAATGTTGTGAATATTTTAAGAGCGTTTACGAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21796</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>78795</contig_pos>
        <strand>+</strand>
        <context>TCATTGGGTG[C/G]GGTGCAAGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTCACAGACAACAATTGTCTCATTTTCCTCCCAATTGACGTCATTGGGTG</left_flank>
        <right_flank>GGTGCAAGTTCATAAGAAAAGAAGCAGATGACCCCCAGGAGTTCCGAGGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTCCGTACCACAAAATCCTCTATACAACAGATGATCGTCGGCATCGAGTGTGGACCGTTTCGGGTTCAATTGTGAGTAAACCATAATTTTTTATAAAATTAAAATTTGATTATTATTTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCTGAAAAGAGTACTGTAAAGATGGAAGAGGATTACGGTAGATGGGAAAAAAAAACGAAGCAAGAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAAAGCGATTTTTCGAAGAGGAGGGTACTGGGAATTCTACTAGGACTCTTAAAATTCAGAAGCTAAAGAAATATGCCAAAACCGACACAGCTCAACATTTGAGCTATGTGGGGGAGTAGTTCGGAATTCGTTTTGCTTCCCGAACGAAACTGATCTCTCCCTCTCGCTTCTCTACGTCTCTCTACCTCAAAGTGCTCTCTCACAGACAACAATTGTCTCATTTTCCTCCCAATTGACGTCATTGGGTGCGGTGCAAGTTCATAAGAAAAGAAGCAGATGACCCCCAGGAGTTCCGAGGAAAAGTAAGTGTGTGTAGATCAAATTTTGATTAAACAGGTGACCTGGAGATTAGATGATCTAGGGACTAGTCACATTTTCTGATTGATTGATTGATAGCGGGGTTGTGAGATTTTGATATTTATAGGAGGATAAGAATGTCAAATTGAAAGTGGAAGATTCTAAGGGAACTTCTGGGGTTTTTGCGTAACTCAGCAGTGTTTATTACAAATGTGCTCCATTGCGAACAAGTATACTGTAGTCCCTACATCATTTTCAGAACTTTTCATTTTCTGAATTTCCGAATTTCTGAATGTTTCAAGTTTTACGGTATTTCCTGGAATTTATTATATTTTGAATTTCTGAGTTTCTGAATTTCCGAATTTTTGAATTTCAAAAGTGAAATTTCTGAATTTCTGAATCTCAGAATTCCTGAATTCCAGAATTTCAGAATTTTAGAATTTCTGAATTTT</canonical>
            <polymorphic>TTTCTCCGTACCACAAAATCCTCTATACAACAGATGATCGTCGGCATCGAGTGTGGACCGTTTCGGGTTCAATTGTGAGTAAACCATAATTTTTTATAAAATTAAAATTTGATTATTATTTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCTGAAAAGAGTACTGTAAAGATGGAAGAGGATTACGGTAGATGGGAAAAAAAAACGAAGCAAGAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAAAGCGATTTTTCGAAGAGGAGGGTACTGGGAATTCTACTAGGACTCTTAAAATTCAGAAGCTAAAGAAATATGCCAAAACCGACACAGCTCAACATTTGAGCTATGTGGGGGAGTAGTTCGGAATTCGTTTTGCTTCCCGAACGAAACTGATCTCTCCCTCTCGCTTCTCTACGTCTCTCTACCTCAAAGTGCTCTCTCACAGACAACAATTGTCTCATTTTCCTCCCAATTGACGTCATTGGGTGSGGTGCAAGTTCATAAGAAAAGAAGCAGATGACCCCCAGGAGTTCCGAGGAAAAGTAAGTGTGTGTAGATCAAATTTTGATTAAACAGGTGACCTGGAGATTAGATGATCTAGGGACTAGTCACATTTTCTGATTGATTGATTGATAGCGGGGTTGTGAGATTTTGATATTTATAGGAGGATAAGAATGTCAAATTGAAAGTGGAAGATTCTAAGGGAACTTCTGGGGTTTTTGCGTAACTCAGCAGTGTTTATTACAAATGTGCTCCATTGCGAACAAGTATACTGTAGTCCCTACATCATTTTCAGAACTTTTCATTTTCTGAATTTCCGAATTTCTGAATGTTTCAAGTTTTACGGTATTTCCTGGAATTTATTATATTTTGAATTTCTGAGTTTCTGAATTTCCGAATTTTTGAATTTCAAAAGTGAAATTTCTGAATTTCTGAATCTCAGAATTCCTGAATTCCAGAATTTCAGAATTTTAGAATTTCTGAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCTAAAGAAATATGCCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CACTTACTTTTCCTCGGAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGCTAAAGAAATATGCCAAAACCGACACAGCTCAACATTTGAGCTATGTGGGGGAGTAGTTCGGAATTCGTTTTGCTTCCCGAACGAAACTGATCTCTCCCTCTCGCTTCTCTACGTCTCTCTACCTCAAAGTGCTCTCTCACAGACAACAATTGTCTCATTTTCCTCCCAATTGACGTCATTGGGTGCGGTGCAAGTTCATAAGAAAAGAAGCAGATGACCCCCAGGAGTTCCGAGGAAAAGTAAGTG</canonical_amplicon>
		<polymorphic_amplicon>AAGCTAAAGAAATATGCCAAAACCGACACAGCTCAACATTTGAGCTATGTGGGGGAGTAGTTCGGAATTCGTTTTGCTTCCCGAACGAAACTGATCTCTCCCTCTCGCTTCTCTACGTCTCTCTACCTCAAAGTGCTCTCTCACAGACAACAATTGTCTCATTTTCCTCCCAATTGACGTCATTGGGTGSGGTGCAAGTTCATAAGAAAAGAAGCAGATGACCCCCAGGAGTTCCGAGGAAAAGTAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21797</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>78589</contig_pos>
        <strand>+</strand>
        <context>AATTYTACTA[G/T]GACTCTTAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGCTAGAAAAAAGCGATTTTTCGAAGAGGAGGGTACTGGGAATTCTACTA</left_flank>
        <right_flank>GACTCTTAAAATTCAGAAGCTAAAGAAATATGCCAAAACCGACACAGCTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGATAGGCTCGTTGAATTGTCATCGCCGCTTCGTAAACGTCCCGTTGCTCGTCATCTAAAATATCGATTTATAAATTTTTTGAATTTTCAGATTTTTAGGTCCTTGTGACATTATAAAATTTCAAAATCTCTCATTTTCGAGCCAAGTTATGCCTCTTTAAATTTGGATGACCTAGAAAATCCCGTTAGATTCCTAGGCCACCACTTTCTCCGTACCACAAAATCCTCTATACAACAGATGATCGTCGGCATCGAGTGTGGACCGTTTCGGGTTCAATTGTGAGTAAACCATAATTTTTTATAAAATTAAAATTTGATTATTATTTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCTGAAAAGAGTACTGTAAAGATGGAAGAGGATTACGGTAGATGGGAAAAAAAAACGAAGCAAGAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAAAGCGATTTTTCGAAGAGGAGGGTACTGGGAATTCTACTAGGACTCTTAAAATTCAGAAGCTAAAGAAATATGCCAAAACCGACACAGCTCAACATTTGAGCTATGTGGGGGAGTAGTTCGGAATTCGTTTTGCTTCCCGAACGAAACTGATCTCTCCCTCTCGCTTCTCTACGTCTCTCTACCTCAAAGTGCTCTCTCACAGACAACAATTGTCTCATTTTCCTCCCAATTGACGTCATTGGGTGCGGTGCAAGTTCATAAGAAAAGAAGCAGATGACCCCCAGGAGTTCCGAGGAAAAGTAAGTGTGTGTAGATCAAATTTTGATTAAACAGGTGACCTGGAGATTAGATGATCTAGGGACTAGTCACATTTTCTGATTGATTGATTGATAGCGGGGTTGTGAGATTTTGATATTTATAGGAGGATAAGAATGTCAAATTGAAAGTGGAAGATTCTAAGGGAACTTCTGGGGTTTTTGCGTAACTCAGCAGTGTTTATTACAAATGTGCTCCATTGCGAACAAGTATACTGTAGTCCCT</canonical>
            <polymorphic>ACGATAGGCTCGTTGAATTGTCATCGCCGCTTCGTAAACGTCCCGTTGCTCGTCATCTAAAATATCGATTTATAAATTTTTTGAATTTTCAGATTTTTAGGTCCTTGTGACATTATAAAATTTCAAAATCTCTCATTTTCGAGCCAAGTTATGCCTCTTTAAATTTGGATGACCTAGAAAATCCCGTTAGATTCCTAGGCCACCACTTTCTCCGTACCACAAAATCCTCTATACAACAGATGATCGTCGGCATCGAGTGTGGACCGTTTCGGGTTCAATTGTGAGTAAACCATAATTTTTTATAAAATTAAAATTTGATTATTATTTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCTGAAAAGAGTACTGTAAAGATGGAAGAGGATTACGGTAGATGGGAAAAAAAAACGAAGCAAGAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAAAGCGATTTTTCGAAGAGGAGGGTACTGGGAATTCTACTAKGACTCTTAAAATTCAGAAGCTAAAGAAATATGCCAAAACCGACACAGCTCAACATTTGAGCTATGTGGGGGAGTAGTTCGGAATTCGTTTTGCTTCCCGAACGAAACTGATCTCTCCCTCTCGCTTCTCTACGTCTCTCTACCTCAAAGTGCTCTCTCACAGACAACAATTGTCTCATTTTCCTCCCAATTGACGTCATTGGGTGCGGTGCAAGTTCATAAGAAAAGAAGCAGATGACCCCCAGGAGTTCCGAGGAAAAGTAAGTGTGTGTAGATCAAATTTTGATTAAACAGGTGACCTGGAGATTAGATGATCTAGGGACTAGTCACATTTTCTGATTGATTGATTGATAGCGGGGTTGTGAGATTTTGATATTTATAGGAGGATAAGAATGTCAAATTGAAAGTGGAAGATTCTAAGGGAACTTCTGGGGTTTTTGCGTAACTCAGCAGTGTTTATTACAAATGTGCTCCATTGCGAACAAGTATACTGTAGTCCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>318 257 178 174 45 21 7</canonical_bands>
                <polymorphic_bands>363 257 178 174 21 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAACTCATTTTAAGTGCTTGT</pcr_primer_p1>
		<pcr_primer_p2>ACAATTGTTGTCTGTGAGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAAAGCGATTTTTCGAAGAGGAGGGTACTGGGAATTCTACTAGGACTCTTAAAATTCAGAAGCTAAAGAAATATGCCAAAACCGACACAGCTCAACATTTGAGCTATGTGGGGGAGTAGTTCGGAATTCGTTTTGCTTCCCGAACGAAACTGATCTCTCCCTCTCGCTTCTCTACGTCTCTCTACCTCAAAGTGCTCTCTCACAGACAACAATTGT</canonical_amplicon>
		<polymorphic_amplicon>GAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAAAGCGATTTTTCGAAGAGGAGGGTACTGGGAATTCTACTAKGACTCTTAAAATTCAGAAGCTAAAGAAATATGCCAAAACCGACACAGCTCAACATTTGAGCTATGTGGGGGAGTAGTTCGGAATTCGTTTTGCTTCCCGAACGAAACTGATCTCTCCCTCTCGCTTCTCTACGTCTCTCTACCTCAAAGTGCTCTCTCACAGACAACAATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21798</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>78583</contig_pos>
        <strand>+</strand>
        <context>ACTGGGAATT[C/T]TACTAKGACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTTGTAGCTAGAAAAAAGCGATTTTTCGAAGAGGAGGGTACTGGGAATT</left_flank>
        <right_flank>TACTAGGACTCTTAAAATTCAGAAGCTAAAGAAATATGCCAAAACCGACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTACACACGATAGGCTCGTTGAATTGTCATCGCCGCTTCGTAAACGTCCCGTTGCTCGTCATCTAAAATATCGATTTATAAATTTTTTGAATTTTCAGATTTTTAGGTCCTTGTGACATTATAAAATTTCAAAATCTCTCATTTTCGAGCCAAGTTATGCCTCTTTAAATTTGGATGACCTAGAAAATCCCGTTAGATTCCTAGGCCACCACTTTCTCCGTACCACAAAATCCTCTATACAACAGATGATCGTCGGCATCGAGTGTGGACCGTTTCGGGTTCAATTGTGAGTAAACCATAATTTTTTATAAAATTAAAATTTGATTATTATTTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCTGAAAAGAGTACTGTAAAGATGGAAGAGGATTACGGTAGATGGGAAAAAAAAACGAAGCAAGAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAAAGCGATTTTTCGAAGAGGAGGGTACTGGGAATTCTACTAGGACTCTTAAAATTCAGAAGCTAAAGAAATATGCCAAAACCGACACAGCTCAACATTTGAGCTATGTGGGGGAGTAGTTCGGAATTCGTTTTGCTTCCCGAACGAAACTGATCTCTCCCTCTCGCTTCTCTACGTCTCTCTACCTCAAAGTGCTCTCTCACAGACAACAATTGTCTCATTTTCCTCCCAATTGACGTCATTGGGTGCGGTGCAAGTTCATAAGAAAAGAAGCAGATGACCCCCAGGAGTTCCGAGGAAAAGTAAGTGTGTGTAGATCAAATTTTGATTAAACAGGTGACCTGGAGATTAGATGATCTAGGGACTAGTCACATTTTCTGATTGATTGATTGATAGCGGGGTTGTGAGATTTTGATATTTATAGGAGGATAAGAATGTCAAATTGAAAGTGGAAGATTCTAAGGGAACTTCTGGGGTTTTTGCGTAACTCAGCAGTGTTTATTACAAATGTGCTCCATTGCGAACAAGTATACTGTA</canonical>
            <polymorphic>GTACACACGATAGGCTCGTTGAATTGTCATCGCCGCTTCGTAAACGTCCCGTTGCTCGTCATCTAAAATATCGATTTATAAATTTTTTGAATTTTCAGATTTTTAGGTCCTTGTGACATTATAAAATTTCAAAATCTCTCATTTTCGAGCCAAGTTATGCCTCTTTAAATTTGGATGACCTAGAAAATCCCGTTAGATTCCTAGGCCACCACTTTCTCCGTACCACAAAATCCTCTATACAACAGATGATCGTCGGCATCGAGTGTGGACCGTTTCGGGTTCAATTGTGAGTAAACCATAATTTTTTATAAAATTAAAATTTGATTATTATTTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCTGAAAAGAGTACTGTAAAGATGGAAGAGGATTACGGTAGATGGGAAAAAAAAACGAAGCAAGAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAAAGCGATTTTTCGAAGAGGAGGGTACTGGGAATTYTACTAGGACTCTTAAAATTCAGAAGCTAAAGAAATATGCCAAAACCGACACAGCTCAACATTTGAGCTATGTGGGGGAGTAGTTCGGAATTCGTTTTGCTTCCCGAACGAAACTGATCTCTCCCTCTCGCTTCTCTACGTCTCTCTACCTCAAAGTGCTCTCTCACAGACAACAATTGTCTCATTTTCCTCCCAATTGACGTCATTGGGTGCGGTGCAAGTTCATAAGAAAAGAAGCAGATGACCCCCAGGAGTTCCGAGGAAAAGTAAGTGTGTGTAGATCAAATTTTGATTAAACAGGTGACCTGGAGATTAGATGATCTAGGGACTAGTCACATTTTCTGATTGATTGATTGATAGCGGGGTTGTGAGATTTTGATATTTATAGGAGGATAAGAATGTCAAATTGAAAGTGGAAGATTCTAAGGGAACTTCTGGGGTTTTTGCGTAACTCAGCAGTGTTTATTACAAATGTGCTCCATTGCGAACAAGTATACTGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>217 196 178 150 80 72 43 35 20 9</canonical_bands>
                <polymorphic_bands>217 198 196 150 80 72 43 35 9</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>495 413 92</canonical_bands>
                <polymorphic_bands>587 413</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAACTCATTTTAAGTGCTTGT</pcr_primer_p1>
		<pcr_primer_p2>ACAATTGTTGTCTGTGAGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAAAGCGATTTTTCGAAGAGGAGGGTACTGGGAATTCTACTAGGACTCTTAAAATTCAGAAGCTAAAGAAATATGCCAAAACCGACACAGCTCAACATTTGAGCTATGTGGGGGAGTAGTTCGGAATTCGTTTTGCTTCCCGAACGAAACTGATCTCTCCCTCTCGCTTCTCTACGTCTCTCTACCTCAAAGTGCTCTCTCACAGACAACAATTGT</canonical_amplicon>
		<polymorphic_amplicon>GAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAAAGCGATTTTTCGAAGAGGAGGGTACTGGGAATTYTACTAGGACTCTTAAAATTCAGAAGCTAAAGAAATATGCCAAAACCGACACAGCTCAACATTTGAGCTATGTGGGGGAGTAGTTCGGAATTCGTTTTGCTTCCCGAACGAAACTGATCTCTCCCTCTCGCTTCTCTACGTCTCTCTACCTCAAAGTGCTCTCTCACAGACAACAATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21799</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>78571</contig_pos>
        <strand>+</strand>
        <context>GAAGAGGAGG[A/G]TACTGGGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCATTTTAAGTGCTTGTAGCTAGAAAAAAGCGATTTTTCGAAGAGGAGG</left_flank>
        <right_flank>TACTGGGAATTCTACTAGGACTCTTAAAATTCAGAAGCTAAAGAAATATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTCCGAGCACGGTACACACGATAGGCTCGTTGAATTGTCATCGCCGCTTCGTAAACGTCCCGTTGCTCGTCATCTAAAATATCGATTTATAAATTTTTTGAATTTTCAGATTTTTAGGTCCTTGTGACATTATAAAATTTCAAAATCTCTCATTTTCGAGCCAAGTTATGCCTCTTTAAATTTGGATGACCTAGAAAATCCCGTTAGATTCCTAGGCCACCACTTTCTCCGTACCACAAAATCCTCTATACAACAGATGATCGTCGGCATCGAGTGTGGACCGTTTCGGGTTCAATTGTGAGTAAACCATAATTTTTTATAAAATTAAAATTTGATTATTATTTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCTGAAAAGAGTACTGTAAAGATGGAAGAGGATTACGGTAGATGGGAAAAAAAAACGAAGCAAGAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAAAGCGATTTTTCGAAGAGGAGGGTACTGGGAATTCTACTAGGACTCTTAAAATTCAGAAGCTAAAGAAATATGCCAAAACCGACACAGCTCAACATTTGAGCTATGTGGGGGAGTAGTTCGGAATTCGTTTTGCTTCCCGAACGAAACTGATCTCTCCCTCTCGCTTCTCTACGTCTCTCTACCTCAAAGTGCTCTCTCACAGACAACAATTGTCTCATTTTCCTCCCAATTGACGTCATTGGGTGCGGTGCAAGTTCATAAGAAAAGAAGCAGATGACCCCCAGGAGTTCCGAGGAAAAGTAAGTGTGTGTAGATCAAATTTTGATTAAACAGGTGACCTGGAGATTAGATGATCTAGGGACTAGTCACATTTTCTGATTGATTGATTGATAGCGGGGTTGTGAGATTTTGATATTTATAGGAGGATAAGAATGTCAAATTGAAAGTGGAAGATTCTAAGGGAACTTCTGGGGTTTTTGCGTAACTCAGCAGTGTTTATTACAAATGTGCTCCATTGCGAAC</canonical>
            <polymorphic>GCTCCGAGCACGGTACACACGATAGGCTCGTTGAATTGTCATCGCCGCTTCGTAAACGTCCCGTTGCTCGTCATCTAAAATATCGATTTATAAATTTTTTGAATTTTCAGATTTTTAGGTCCTTGTGACATTATAAAATTTCAAAATCTCTCATTTTCGAGCCAAGTTATGCCTCTTTAAATTTGGATGACCTAGAAAATCCCGTTAGATTCCTAGGCCACCACTTTCTCCGTACCACAAAATCCTCTATACAACAGATGATCGTCGGCATCGAGTGTGGACCGTTTCGGGTTCAATTGTGAGTAAACCATAATTTTTTATAAAATTAAAATTTGATTATTATTTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCTGAAAAGAGTACTGTAAAGATGGAAGAGGATTACGGTAGATGGGAAAAAAAAACGAAGCAAGAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAAAGCGATTTTTCGAAGAGGAGGRTACTGGGAATTCTACTAGGACTCTTAAAATTCAGAAGCTAAAGAAATATGCCAAAACCGACACAGCTCAACATTTGAGCTATGTGGGGGAGTAGTTCGGAATTCGTTTTGCTTCCCGAACGAAACTGATCTCTCCCTCTCGCTTCTCTACGTCTCTCTACCTCAAAGTGCTCTCTCACAGACAACAATTGTCTCATTTTCCTCCCAATTGACGTCATTGGGTGCGGTGCAAGTTCATAAGAAAAGAAGCAGATGACCCCCAGGAGTTCCGAGGAAAAGTAAGTGTGTGTAGATCAAATTTTGATTAAACAGGTGACCTGGAGATTAGATGATCTAGGGACTAGTCACATTTTCTGATTGATTGATTGATAGCGGGGTTGTGAGATTTTGATATTTATAGGAGGATAAGAATGTCAAATTGAAAGTGGAAGATTCTAAGGGAACTTCTGGGGTTTTTGCGTAACTCAGCAGTGTTTATTACAAATGTGCTCCATTGCGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 219 160 108 14</canonical_bands>
                <polymorphic_bands>607 219 160 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAACTCATTTTAAGTGCTTGT</pcr_primer_p1>
		<pcr_primer_p2>ACAATTGTTGTCTGTGAGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAAAGCGATTTTTCGAAGAGGAGGGTACTGGGAATTCTACTAGGACTCTTAAAATTCAGAAGCTAAAGAAATATGCCAAAACCGACACAGCTCAACATTTGAGCTATGTGGGGGAGTAGTTCGGAATTCGTTTTGCTTCCCGAACGAAACTGATCTCTCCCTCTCGCTTCTCTACGTCTCTCTACCTCAAAGTGCTCTCTCACAGACAACAATTGT</canonical_amplicon>
		<polymorphic_amplicon>GAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAAAGCGATTTTTCGAAGAGGAGGRTACTGGGAATTCTACTAGGACTCTTAAAATTCAGAAGCTAAAGAAATATGCCAAAACCGACACAGCTCAACATTTGAGCTATGTGGGGGAGTAGTTCGGAATTCGTTTTGCTTCCCGAACGAAACTGATCTCTCCCTCTCGCTTCTCTACGTCTCTCTACCTCAAAGTGCTCTCTCACAGACAACAATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21800</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>78491</contig_pos>
        <strand>+</strand>
        <context>AGGATTACGG[C/T]AGATGGGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCTCCACCTGTGCTGAAAAGAGTACTGTAAAGATGGAAGAGGATTACGG</left_flank>
        <right_flank>AGATGGGAAAAAAAAACGAAGCAAGAGAACTCATTTTAAGTGCTTGTAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAACTGTTTGTATCTTCTATAGCAACCTTGAATCTTCAACGCTGCTCGTCTCTCCAAATCCTCCTGTCGGCGAGTCGTGCTCCGAGCACGGTACACACGATAGGCTCGTTGAATTGTCATCGCCGCTTCGTAAACGTCCCGTTGCTCGTCATCTAAAATATCGATTTATAAATTTTTTGAATTTTCAGATTTTTAGGTCCTTGTGACATTATAAAATTTCAAAATCTCTCATTTTCGAGCCAAGTTATGCCTCTTTAAATTTGGATGACCTAGAAAATCCCGTTAGATTCCTAGGCCACCACTTTCTCCGTACCACAAAATCCTCTATACAACAGATGATCGTCGGCATCGAGTGTGGACCGTTTCGGGTTCAATTGTGAGTAAACCATAATTTTTTATAAAATTAAAATTTGATTATTATTTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCTGAAAAGAGTACTGTAAAGATGGAAGAGGATTACGGTAGATGGGAAAAAAAAACGAAGCAAGAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAAAGCGATTTTTCGAAGAGGAGGGTACTGGGAATTCTACTAGGACTCTTAAAATTCAGAAGCTAAAGAAATATGCCAAAACCGACACAGCTCAACATTTGAGCTATGTGGGGGAGTAGTTCGGAATTCGTTTTGCTTCCCGAACGAAACTGATCTCTCCCTCTCGCTTCTCTACGTCTCTCTACCTCAAAGTGCTCTCTCACAGACAACAATTGTCTCATTTTCCTCCCAATTGACGTCATTGGGTGCGGTGCAAGTTCATAAGAAAAGAAGCAGATGACCCCCAGGAGTTCCGAGGAAAAGTAAGTGTGTGTAGATCAAATTTTGATTAAACAGGTGACCTGGAGATTAGATGATCTAGGGACTAGTCACATTTTCTGATTGATTGATTGATAGCGGGGTTGTGAGATTTTGATATTTATAGGAGGATAAGAATGTCAAATTG</canonical>
            <polymorphic>CAAAACTGTTTGTATCTTCTATAGCAACCTTGAATCTTCAACGCTGCTCGTCTCTCCAAATCCTCCTGTCGGCGAGTCGTGCTCCGAGCACGGTACACACGATAGGCTCGTTGAATTGTCATCGCCGCTTCGTAAACGTCCCGTTGCTCGTCATCTAAAATATCGATTTATAAATTTTTTGAATTTTCAGATTTTTAGGTCCTTGTGACATTATAAAATTTCAAAATCTCTCATTTTCGAGCCAAGTTATGCCTCTTTAAATTTGGATGACCTAGAAAATCCCGTTAGATTCCTAGGCCACCACTTTCTCCGTACCACAAAATCCTCTATACAACAGATGATCGTCGGCATCGAGTGTGGACCGTTTCGGGTTCAATTGTGAGTAAACCATAATTTTTTATAAAATTAAAATTTGATTATTATTTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCTGAAAAGAGTACTGTAAAGATGGAAGAGGATTACGGYAGATGGGAAAAAAAAACGAAGCAAGAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAAAGCGATTTTTCGAAGAGGAGGGTACTGGGAATTCTACTAGGACTCTTAAAATTCAGAAGCTAAAGAAATATGCCAAAACCGACACAGCTCAACATTTGAGCTATGTGGGGGAGTAGTTCGGAATTCGTTTTGCTTCCCGAACGAAACTGATCTCTCCCTCTCGCTTCTCTACGTCTCTCTACCTCAAAGTGCTCTCTCACAGACAACAATTGTCTCATTTTCCTCCCAATTGACGTCATTGGGTGCGGTGCAAGTTCATAAGAAAAGAAGCAGATGACCCCCAGGAGTTCCGAGGAAAAGTAAGTGTGTGTAGATCAAATTTTGATTAAACAGGTGACCTGGAGATTAGATGATCTAGGGACTAGTCACATTTTCTGATTGATTGATTGATAGCGGGGTTGTGAGATTTTGATATTTATAGGAGGATAAGAATGTCAAATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>502 271 113 85 22 7</canonical_bands>
                <polymorphic_bands>524 271 113 85 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCACAAAATCCTCTATACAACA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTAGCTACAAGCACTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACCACAAAATCCTCTATACAACAGATGATCGTCGGCATCGAGTGTGGACCGTTTCGGGTTCAATTGTGAGTAAACCATAATTTTTTATAAAATTAAAATTTGATTATTATTTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCTGAAAAGAGTACTGTAAAGATGGAAGAGGATTACGGTAGATGGGAAAAAAAAACGAAGCAAGAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACCACAAAATCCTCTATACAACAGATGATCGTCGGCATCGAGTGTGGACCGTTTCGGGTTCAATTGTGAGTAAACCATAATTTTTTATAAAATTAAAATTTGATTATTATTTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCTGAAAAGAGTACTGTAAAGATGGAAGAGGATTACGGYAGATGGGAAAAAAAAACGAAGCAAGAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21801</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>78479</contig_pos>
        <strand>+</strand>
        <context>TAAAGATGGA[A/G]GAGGATTACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGCAAGAGGCACGGCTCCACCTGTGCTGAAAAGAGTACTGTAAAGATGGA</left_flank>
        <right_flank>GAGGATTACGGTAGATGGGAAAAAAAAACGAAGCAAGAGAACTCATTTTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTCAGATAGCAAAACTGTTTGTATCTTCTATAGCAACCTTGAATCTTCAACGCTGCTCGTCTCTCCAAATCCTCCTGTCGGCGAGTCGTGCTCCGAGCACGGTACACACGATAGGCTCGTTGAATTGTCATCGCCGCTTCGTAAACGTCCCGTTGCTCGTCATCTAAAATATCGATTTATAAATTTTTTGAATTTTCAGATTTTTAGGTCCTTGTGACATTATAAAATTTCAAAATCTCTCATTTTCGAGCCAAGTTATGCCTCTTTAAATTTGGATGACCTAGAAAATCCCGTTAGATTCCTAGGCCACCACTTTCTCCGTACCACAAAATCCTCTATACAACAGATGATCGTCGGCATCGAGTGTGGACCGTTTCGGGTTCAATTGTGAGTAAACCATAATTTTTTATAAAATTAAAATTTGATTATTATTTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCTGAAAAGAGTACTGTAAAGATGGAAGAGGATTACGGTAGATGGGAAAAAAAAACGAAGCAAGAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAAAGCGATTTTTCGAAGAGGAGGGTACTGGGAATTCTACTAGGACTCTTAAAATTCAGAAGCTAAAGAAATATGCCAAAACCGACACAGCTCAACATTTGAGCTATGTGGGGGAGTAGTTCGGAATTCGTTTTGCTTCCCGAACGAAACTGATCTCTCCCTCTCGCTTCTCTACGTCTCTCTACCTCAAAGTGCTCTCTCACAGACAACAATTGTCTCATTTTCCTCCCAATTGACGTCATTGGGTGCGGTGCAAGTTCATAAGAAAAGAAGCAGATGACCCCCAGGAGTTCCGAGGAAAAGTAAGTGTGTGTAGATCAAATTTTGATTAAACAGGTGACCTGGAGATTAGATGATCTAGGGACTAGTCACATTTTCTGATTGATTGATTGATAGCGGGGTTGTGAGATTTTGATATTTATAGGAGGATAAG</canonical>
            <polymorphic>TTCTTCAGATAGCAAAACTGTTTGTATCTTCTATAGCAACCTTGAATCTTCAACGCTGCTCGTCTCTCCAAATCCTCCTGTCGGCGAGTCGTGCTCCGAGCACGGTACACACGATAGGCTCGTTGAATTGTCATCGCCGCTTCGTAAACGTCCCGTTGCTCGTCATCTAAAATATCGATTTATAAATTTTTTGAATTTTCAGATTTTTAGGTCCTTGTGACATTATAAAATTTCAAAATCTCTCATTTTCGAGCCAAGTTATGCCTCTTTAAATTTGGATGACCTAGAAAATCCCGTTAGATTCCTAGGCCACCACTTTCTCCGTACCACAAAATCCTCTATACAACAGATGATCGTCGGCATCGAGTGTGGACCGTTTCGGGTTCAATTGTGAGTAAACCATAATTTTTTATAAAATTAAAATTTGATTATTATTTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCTGAAAAGAGTACTGTAAAGATGGARGAGGATTACGGTAGATGGGAAAAAAAAACGAAGCAAGAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAAAGCGATTTTTCGAAGAGGAGGGTACTGGGAATTCTACTAGGACTCTTAAAATTCAGAAGCTAAAGAAATATGCCAAAACCGACACAGCTCAACATTTGAGCTATGTGGGGGAGTAGTTCGGAATTCGTTTTGCTTCCCGAACGAAACTGATCTCTCCCTCTCGCTTCTCTACGTCTCTCTACCTCAAAGTGCTCTCTCACAGACAACAATTGTCTCATTTTCCTCCCAATTGACGTCATTGGGTGCGGTGCAAGTTCATAAGAAAAGAAGCAGATGACCCCCAGGAGTTCCGAGGAAAAGTAAGTGTGTGTAGATCAAATTTTGATTAAACAGGTGACCTGGAGATTAGATGATCTAGGGACTAGTCACATTTTCTGATTGATTGATTGATAGCGGGGTTGTGAGATTTTGATATTTATAGGAGGATAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCACAAAATCCTCTATACAACA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTAGCTACAAGCACTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACCACAAAATCCTCTATACAACAGATGATCGTCGGCATCGAGTGTGGACCGTTTCGGGTTCAATTGTGAGTAAACCATAATTTTTTATAAAATTAAAATTTGATTATTATTTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCTGAAAAGAGTACTGTAAAGATGGAAGAGGATTACGGTAGATGGGAAAAAAAAACGAAGCAAGAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACCACAAAATCCTCTATACAACAGATGATCGTCGGCATCGAGTGTGGACCGTTTCGGGTTCAATTGTGAGTAAACCATAATTTTTTATAAAATTAAAATTTGATTATTATTTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCTGAAAAGAGTACTGTAAAGATGGARGAGGATTACGGTAGATGGGAAAAAAAAACGAAGCAAGAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21802</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>78465</contig_pos>
        <strand>+</strand>
        <context>TGAAAASAGT[A/G]CTGTAAAGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCTGAAAAGAGT</left_flank>
        <right_flank>CTGTAAAGATGGAAGAGGATTACGGTAGATGGGAAAAAAAAACGAAGCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGCATTATGAAGTTTCTTCAGATAGCAAAACTGTTTGTATCTTCTATAGCAACCTTGAATCTTCAACGCTGCTCGTCTCTCCAAATCCTCCTGTCGGCGAGTCGTGCTCCGAGCACGGTACACACGATAGGCTCGTTGAATTGTCATCGCCGCTTCGTAAACGTCCCGTTGCTCGTCATCTAAAATATCGATTTATAAATTTTTTGAATTTTCAGATTTTTAGGTCCTTGTGACATTATAAAATTTCAAAATCTCTCATTTTCGAGCCAAGTTATGCCTCTTTAAATTTGGATGACCTAGAAAATCCCGTTAGATTCCTAGGCCACCACTTTCTCCGTACCACAAAATCCTCTATACAACAGATGATCGTCGGCATCGAGTGTGGACCGTTTCGGGTTCAATTGTGAGTAAACCATAATTTTTTATAAAATTAAAATTTGATTATTATTTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCTGAAAAGAGTACTGTAAAGATGGAAGAGGATTACGGTAGATGGGAAAAAAAAACGAAGCAAGAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAAAGCGATTTTTCGAAGAGGAGGGTACTGGGAATTCTACTAGGACTCTTAAAATTCAGAAGCTAAAGAAATATGCCAAAACCGACACAGCTCAACATTTGAGCTATGTGGGGGAGTAGTTCGGAATTCGTTTTGCTTCCCGAACGAAACTGATCTCTCCCTCTCGCTTCTCTACGTCTCTCTACCTCAAAGTGCTCTCTCACAGACAACAATTGTCTCATTTTCCTCCCAATTGACGTCATTGGGTGCGGTGCAAGTTCATAAGAAAAGAAGCAGATGACCCCCAGGAGTTCCGAGGAAAAGTAAGTGTGTGTAGATCAAATTTTGATTAAACAGGTGACCTGGAGATTAGATGATCTAGGGACTAGTCACATTTTCTGATTGATTGATTGATAGCGGGGTTGTGAGATTTTGATATT</canonical>
            <polymorphic>CGGCATTATGAAGTTTCTTCAGATAGCAAAACTGTTTGTATCTTCTATAGCAACCTTGAATCTTCAACGCTGCTCGTCTCTCCAAATCCTCCTGTCGGCGAGTCGTGCTCCGAGCACGGTACACACGATAGGCTCGTTGAATTGTCATCGCCGCTTCGTAAACGTCCCGTTGCTCGTCATCTAAAATATCGATTTATAAATTTTTTGAATTTTCAGATTTTTAGGTCCTTGTGACATTATAAAATTTCAAAATCTCTCATTTTCGAGCCAAGTTATGCCTCTTTAAATTTGGATGACCTAGAAAATCCCGTTAGATTCCTAGGCCACCACTTTCTCCGTACCACAAAATCCTCTATACAACAGATGATCGTCGGCATCGAGTGTGGACCGTTTCGGGTTCAATTGTGAGTAAACCATAATTTTTTATAAAATTAAAATTTGATTATTATTTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCTGAAAAGAGTRCTGTAAAGATGGAAGAGGATTACGGTAGATGGGAAAAAAAAACGAAGCAAGAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAAAGCGATTTTTCGAAGAGGAGGGTACTGGGAATTCTACTAGGACTCTTAAAATTCAGAAGCTAAAGAAATATGCCAAAACCGACACAGCTCAACATTTGAGCTATGTGGGGGAGTAGTTCGGAATTCGTTTTGCTTCCCGAACGAAACTGATCTCTCCCTCTCGCTTCTCTACGTCTCTCTACCTCAAAGTGCTCTCTCACAGACAACAATTGTCTCATTTTCCTCCCAATTGACGTCATTGGGTGCGGTGCAAGTTCATAAGAAAAGAAGCAGATGACCCCCAGGAGTTCCGAGGAAAAGTAAGTGTGTGTAGATCAAATTTTGATTAAACAGGTGACCTGGAGATTAGATGATCTAGGGACTAGTCACATTTTCTGATTGATTGATTGATAGCGGGGTTGTGAGATTTTGATATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGTACT</site>
                <isoschizomers>
                    <enzyme>Acc113I</enzyme>
                    <enzyme>ScaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>393 219 160 120 108</canonical_bands>
                <polymorphic_bands>393 268 219 120</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>476 271 113 85 33 22</canonical_bands>
                <polymorphic_bands>476 271 135 85 33</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCACAAAATCCTCTATACAACA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTAGCTACAAGCACTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACCACAAAATCCTCTATACAACAGATGATCGTCGGCATCGAGTGTGGACCGTTTCGGGTTCAATTGTGAGTAAACCATAATTTTTTATAAAATTAAAATTTGATTATTATTTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCTGAAAAGAGTACTGTAAAGATGGAAGAGGATTACGGTAGATGGGAAAAAAAAACGAAGCAAGAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACCACAAAATCCTCTATACAACAGATGATCGTCGGCATCGAGTGTGGACCGTTTCGGGTTCAATTGTGAGTAAACCATAATTTTTTATAAAATTAAAATTTGATTATTATTTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCTGAAAAGAGTRCTGTAAAGATGGAAGAGGATTACGGTAGATGGGAAAAAAAAACGAAGCAAGAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21803</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>78461</contig_pos>
        <strand>+</strand>
        <context>GTGCTGAAAA[C/G]AGTRCTGTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTATTTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCTGAAAA</left_flank>
        <right_flank>AGTACTGTAAAGATGGAAGAGGATTACGGTAGATGGGAAAAAAAAACGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGCGGCATTATGAAGTTTCTTCAGATAGCAAAACTGTTTGTATCTTCTATAGCAACCTTGAATCTTCAACGCTGCTCGTCTCTCCAAATCCTCCTGTCGGCGAGTCGTGCTCCGAGCACGGTACACACGATAGGCTCGTTGAATTGTCATCGCCGCTTCGTAAACGTCCCGTTGCTCGTCATCTAAAATATCGATTTATAAATTTTTTGAATTTTCAGATTTTTAGGTCCTTGTGACATTATAAAATTTCAAAATCTCTCATTTTCGAGCCAAGTTATGCCTCTTTAAATTTGGATGACCTAGAAAATCCCGTTAGATTCCTAGGCCACCACTTTCTCCGTACCACAAAATCCTCTATACAACAGATGATCGTCGGCATCGAGTGTGGACCGTTTCGGGTTCAATTGTGAGTAAACCATAATTTTTTATAAAATTAAAATTTGATTATTATTTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCTGAAAAGAGTACTGTAAAGATGGAAGAGGATTACGGTAGATGGGAAAAAAAAACGAAGCAAGAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAAAGCGATTTTTCGAAGAGGAGGGTACTGGGAATTCTACTAGGACTCTTAAAATTCAGAAGCTAAAGAAATATGCCAAAACCGACACAGCTCAACATTTGAGCTATGTGGGGGAGTAGTTCGGAATTCGTTTTGCTTCCCGAACGAAACTGATCTCTCCCTCTCGCTTCTCTACGTCTCTCTACCTCAAAGTGCTCTCTCACAGACAACAATTGTCTCATTTTCCTCCCAATTGACGTCATTGGGTGCGGTGCAAGTTCATAAGAAAAGAAGCAGATGACCCCCAGGAGTTCCGAGGAAAAGTAAGTGTGTGTAGATCAAATTTTGATTAAACAGGTGACCTGGAGATTAGATGATCTAGGGACTAGTCACATTTTCTGATTGATTGATTGATAGCGGGGTTGTGAGATTTTGA</canonical>
            <polymorphic>ATGGCGGCATTATGAAGTTTCTTCAGATAGCAAAACTGTTTGTATCTTCTATAGCAACCTTGAATCTTCAACGCTGCTCGTCTCTCCAAATCCTCCTGTCGGCGAGTCGTGCTCCGAGCACGGTACACACGATAGGCTCGTTGAATTGTCATCGCCGCTTCGTAAACGTCCCGTTGCTCGTCATCTAAAATATCGATTTATAAATTTTTTGAATTTTCAGATTTTTAGGTCCTTGTGACATTATAAAATTTCAAAATCTCTCATTTTCGAGCCAAGTTATGCCTCTTTAAATTTGGATGACCTAGAAAATCCCGTTAGATTCCTAGGCCACCACTTTCTCCGTACCACAAAATCCTCTATACAACAGATGATCGTCGGCATCGAGTGTGGACCGTTTCGGGTTCAATTGTGAGTAAACCATAATTTTTTATAAAATTAAAATTTGATTATTATTTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCTGAAAASAGTACTGTAAAGATGGAAGAGGATTACGGTAGATGGGAAAAAAAAACGAAGCAAGAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAAAGCGATTTTTCGAAGAGGAGGGTACTGGGAATTCTACTAGGACTCTTAAAATTCAGAAGCTAAAGAAATATGCCAAAACCGACACAGCTCAACATTTGAGCTATGTGGGGGAGTAGTTCGGAATTCGTTTTGCTTCCCGAACGAAACTGATCTCTCCCTCTCGCTTCTCTACGTCTCTCTACCTCAAAGTGCTCTCTCACAGACAACAATTGTCTCATTTTCCTCCCAATTGACGTCATTGGGTGCGGTGCAAGTTCATAAGAAAAGAAGCAGATGACCCCCAGGAGTTCCGAGGAAAAGTAAGTGTGTGTAGATCAAATTTTGATTAAACAGGTGACCTGGAGATTAGATGATCTAGGGACTAGTCACATTTTCTGATTGATTGATTGATAGCGGGGTTGTGAGATTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCACAAAATCCTCTATACAACA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTAGCTACAAGCACTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACCACAAAATCCTCTATACAACAGATGATCGTCGGCATCGAGTGTGGACCGTTTCGGGTTCAATTGTGAGTAAACCATAATTTTTTATAAAATTAAAATTTGATTATTATTTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCTGAAAAGAGTACTGTAAAGATGGAAGAGGATTACGGTAGATGGGAAAAAAAAACGAAGCAAGAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACCACAAAATCCTCTATACAACAGATGATCGTCGGCATCGAGTGTGGACCGTTTCGGGTTCAATTGTGAGTAAACCATAATTTTTTATAAAATTAAAATTTGATTATTATTTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCTGAAAASAGTACTGTAAAGATGGAAGAGGATTACGGTAGATGGGAAAAAAAAACGAAGCAAGAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21805</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>151000</contig_pos>
        <strand></strand>
        <context>ATGAAAAATT[C/T]TTCCAACCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGATTCCAACAAAAAATTTCATTGAATTCAATAAATCCAATGAAAAATT</left_flank>
        <right_flank>TTCCAACCAAAAAAAAAAAACAACCAACAAACGAAACAGACAACAATGAG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGGGAAAATGATGCTTACTACACACTCTGCCTACTGGACCAACGAAGATTTAGCCATGTTCCTTGCGAACGTGCTCTATTGCAAACGCGCCAAACCCGAAGAAGCCAAACCAGATACGGGCCGAAATTGAATCGTATTTATCTGTTATTTCCCCCGCCAAAAAAGTCTACTTTTTGCCTATTTTTGTCTAAATTCCCGATTTTCTCGCCATCTTGTGAAAGTAGAATCCCAGAACTTGCCCAGTATTTTTTTTTTGGCCCGTTTGTAATGTTCTTTGACCCGTTTGAGAAAAATCTCATCCCCATCTCTTTATTGCCAATTTTCTGAAATTTATTATTTTTTTCTTGAAAAACTCAGAATTTTGGGTAACCGCCTGAAATTTTGGAAAATTAGAATTTTCAGGAACCCAGAATTTCAAGAATTCTGAATTTTTTTGATTTTTCAAAATCGATTCCAACAAAAAATTTCATTGAATTCAATAAATCCAATGAAAAATTCTTCCAACCAAAAAAAAAAAACAACCAACAAACGAAACAGACAACAATGAGCCATCGAGGGCATGGCCTATGGGATGGTCGGGTACAACATGTACAATATCGATTGATTGAAAAACTAAAAAAAAAAAGAACCATCATTTAGAACGGGGCGTGGCTTCGAATGAAAGTGGGCATGGCCTATGGGATGGGTGGTACAAAAAAAATCCACAGAAAAAAGAAAAACTGAGCAATTTTAGGAAAATGAGAAAAAGATGAATATGGAGATGGAACAATAATTTCTAGGAGTCTAGAGGGGTAGAAATTTAGGAAATTTAGAGGAAAAATTGAATAAAAAATGATGGGACCGATCATTTACAAAAGAATTAGTCAATTTTTGGCTAAAAATTGGCTGAAATTTCCAGCCAAAGGAACAGGAAATTCCAGAAAAATCCAACAATATTTTGGCTCAAAAACGCTAGAACTACACAAAAATCAATGCTAAAATAGACAATTTTACGGATT</canonical>
            <polymorphic>TGTGGGAAAATGATGCTTACTACACACTCTGCCTACTGGACCAACGAAGATTTAGCCATGTTCCTTGCGAACGTGCTCTATTGCAAACGCGCCAAACCCGAAGAAGCCAAACCAGATACGGGCCGAAATTGAATCGTATTTATCTGTTATTTCCCCCGCCAAAAAAGTCTACTTTTTGCCTATTTTTGTCTAAATTCCCGATTTTCTCGCCATCTTGTGAAAGTAGAATCCCAGAACTTGCCCAGTATTTTTTTTTTGGCCCGTTTGTAATGTTCTTTGACCCGTTTGAGAAAAATCTCATCCCCATCTCTTTATTGCCAATTTTCTGAAATTTATTATTTTTTTCTTGAAAAACTCAGAATTTTGGGTAACCGCCTGAAATTTTGGAAAATTAGAATTTTCAGGAACCCAGAATTTCAAGAATTCTGAATTTTTTTGATTTTTCAAAATCGATTCCAACAAAAAATTTCATTGAATTCAATAAATCCAATGAAAAATTYTTCCAACCAAAAAAAAAAAACAACCAACAAACGAAACAGACAACAATGAGCCATCGAGGGCATGGCCTATGGGATGGTCGGGTACAACATGTACAATATCGATTGATTGAAAAACTAAAAAAAAAAAGAACCATCATTTAGAACGGGGCGTGGCTTCGAATGAAAGTGGGCATGGCCTATGGGATGGGTGGTACAAAAAAAATCCACAGAAAAAAGAAAAACTGAGCAATTTTAGGAAAATGAGAAAAAGATGAATATGGAGATGGAACAATAATTTCTAGGAGTCTAGAGGGGTAGAAATTTAGGAAATTTAGAGGAAAAATTGAATAAAAAATGATGGGACCGATCATTTACAAAAGAATTAGTCAATTTTTGGCTAAAAATTGGCTGAAATTTCCAGCCAAAGGAACAGGAAATTCCAGAAAAATCCAACAATATTTTGGCTCAAAAACGCTAGAACTACACAAAAATCAATGCTAAAATAGACAATTTTACGGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>303 192 137 86 84 36 30 23 21 20 17 16 10 9 9 7</canonical_bands>
                <polymorphic_bands>324 192 137 86 84 36 30 23 20 17 16 10 9 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATCTCTTTATTGCCAATTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATGGCTCATTGTTGTCTGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATCTCTTTATTGCCAATTTTCTGAAATTTATTATTTTTTTCTTGAAAAACTCAGAATTTTGGGTAACCGCCTGAAATTTTGGAAAATTAGAATTTTCAGGAACCCAGAATTTCAAGAATTCTGAATTTTTTTGATTTTTCAAAATCGATTCCAACAAAAAATTTCATTGAATTCAATAAATCCAATGAAAAATTCTTCCAACCAAAAAAAAAAAACAACCAACAAACGAAACAGACAACAATGAGCCAT</canonical_amplicon>
		<polymorphic_amplicon>CATCTCTTTATTGCCAATTTTCTGAAATTTATTATTTTTTTCTTGAAAAACTCAGAATTTTGGGTAACCGCCTGAAATTTTGGAAAATTAGAATTTTCAGGAACCCAGAATTTCAAGAATTCTGAATTTTTTTGATTTTTCAAAATCGATTCCAACAAAAAATTTCATTGAATTCAATAAATCCAATGAAAAATTYTTCCAACCAAAAAAAAAAAACAACCAACAAACGAAACAGACAACAATGAGCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21806</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>150951</contig_pos>
        <strand></strand>
        <context>ttttcaaaat[C/A]gattccaaca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TCAGGAACCCAGAATTTCAAGAATTCTGAATTTTTTTGATTTTTCAAAAT</left_flank>
        <right_flank>GATTCCAACAAAAAATTTCATTGAATTCAATAAATCCAATGAAAAATTCT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGGCAACTTTTTTTTGTTTTTTGTACAGAATTCAGAAATGAGTAAGAATGTGGGAAAATGATGCTTACTACACACTCTGCCTACTGGACCAACGAAGATTTAGCCATGTTCCTTGCGAACGTGCTCTATTGCAAACGCGCCAAACCCGAAGAAGCCAAACCAGATACGGGCCGAAATTGAATCGTATTTATCTGTTATTTCCCCCGCCAAAAAAGTCTACTTTTTGCCTATTTTTGTCTAAATTCCCGATTTTCTCGCCATCTTGTGAAAGTAGAATCCCAGAACTTGCCCAGTATTTTTTTTTTGGCCCGTTTGTAATGTTCTTTGACCCGTTTGAGAAAAATCTCATCCCCATCTCTTTATTGCCAATTTTCTGAAATTTATTATTTTTTTCTTGAAAAACTCAGAATTTTGGGTAACCGCCTGAAATTTTGGAAAATTAGAATTTTCAGGAACCCAGAATTTCAAGAATTCTGAATTTTTTTGATTTTTCAAAATCGATTCCAACAAAAAATTTCATTGAATTCAATAAATCCAATGAAAAATTCTTCCAACCAAAAAAAAAAAACAACCAACAAACGAAACAGACAACAATGAGCCATCGAGGGCATGGCCTATGGGATGGTCGGGTACAACATGTACAATATCGATTGATTGAAAAACTAAAAAAAAAAAGAACCATCATTTAGAACGGGGCGTGGCTTCGAATGAAAGTGGGCATGGCCTATGGGATGGGTGGTACAAAAAAAATCCACAGAAAAAAGAAAAACTGAGCAATTTTAGGAAAATGAGAAAAAGATGAATATGGAGATGGAACAATAATTTCTAGGAGTCTAGAGGGGTAGAAATTTAGGAAATTTAGAGGAAAAATTGAATAAAAAATGATGGGACCGATCATTTACAAAAGAATTAGTCAATTTTTGGCTAAAAATTGGCTGAAATTTCCAGCCAAAGGAACAGGAAATTCCAGAAAAATCCAACAATATTTTGGCTCAAAAA</canonical>
            <polymorphic>GTGGCAACTTTTTTTTGTTTTTTGTACAGAATTCAGAAATGAGTAAGAATGTGGGAAAATGATGCTTACTACACACTCTGCCTACTGGACCAACGAAGATTTAGCCATGTTCCTTGCGAACGTGCTCTATTGCAAACGCGCCAAACCCGAAGAAGCCAAACCAGATACGGGCCGAAATTGAATCGTATTTATCTGTTATTTCCCCCGCCAAAAAAGTCTACTTTTTGCCTATTTTTGTCTAAATTCCCGATTTTCTCGCCATCTTGTGAAAGTAGAATCCCAGAACTTGCCCAGTATTTTTTTTTTGGCCCGTTTGTAATGTTCTTTGACCCGTTTGAGAAAAATCTCATCCCCATCTCTTTATTGCCAATTTTCTGAAATTTATTATTTTTTTCTTGAAAAACTCAGAATTTTGGGTAACCGCCTGAAATTTTGGAAAATTAGAATTTTCAGGAACCCAGAATTTCAAGAATTCTGAATTTTTTTGATTTTTCAAAATMGATTCCAACAAAAAATTTCATTGAATTCAATAAATCCAATGAAAAATTCTTCCAACCAAAAAAAAAAAACAACCAACAAACGAAACAGACAACAATGAGCCATCGAGGGCATGGCCTATGGGATGGTCGGGTACAACATGTACAATATCGATTGATTGAAAAACTAAAAAAAAAAAGAACCATCATTTAGAACGGGGCGTGGCTTCGAATGAAAGTGGGCATGGCCTATGGGATGGGTGGTACAAAAAAAATCCACAGAAAAAAGAAAAACTGAGCAATTTTAGGAAAATGAGAAAAAGATGAATATGGAGATGGAACAATAATTTCTAGGAGTCTAGAGGGGTAGAAATTTAGGAAATTTAGAGGAAAAATTGAATAAAAAATGATGGGACCGATCATTTACAAAAGAATTAGTCAATTTTTGGCTAAAAATTGGCTGAAATTTCCAGCCAAAGGAACAGGAAATTCCAGAAAAATCCAACAATATTTTGGCTCAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>499 352 149</canonical_bands>
                <polymorphic_bands>648 352</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 294 104 57 45</canonical_bands>
                <polymorphic_bands>604 294 57 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATCTCTTTATTGCCAATTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATGGCTCATTGTTGTCTGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATCTCTTTATTGCCAATTTTCTGAAATTTATTATTTTTTTCTTGAAAAACTCAGAATTTTGGGTAACCGCCTGAAATTTTGGAAAATTAGAATTTTCAGGAACCCAGAATTTCAAGAATTCTGAATTTTTTTGATTTTTCAAAATCGATTCCAACAAAAAATTTCATTGAATTCAATAAATCCAATGAAAAATTCTTCCAACCAAAAAAAAAAAACAACCAACAAACGAAACAGACAACAATGAGCCAT</canonical_amplicon>
		<polymorphic_amplicon>CATCTCTTTATTGCCAATTTTCTGAAATTTATTATTTTTTTCTTGAAAAACTCAGAATTTTGGGTAACCGCCTGAAATTTTGGAAAATTAGAATTTTCAGGAACCCAGAATTTCAAGAATTCTGAATTTTTTTGATTTTTCAAAATMGATTCCAACAAAAAATTTCATTGAATTCAATAAATCCAATGAAAAATTCTTCCAACCAAAAAAAAAAAACAACCAACAAACGAAACAGACAACAATGAGCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21807</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>150868</contig_pos>
        <strand></strand>
        <context>AGAATTTTGG[G/T]TAACCGCCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCAATTTTCTGAAATTTATTATTTTTTTCTTGAAAAACTCAGAATTTTGG</left_flank>
        <right_flank>TAACCGCCTGAAATTTTGGAAAATTAGAATTTTCAGGAACCCAGAATTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACCGCCCTCTCTGTGTGGCCGCATGGTGTAGTGGTTAGTGAACTACGCTTTTGCCCGCGCGACGAGGGTTCGTGTCCGACCGGTGGCAACTTTTTTTTGTTTTTTGTACAGAATTCAGAAATGAGTAAGAATGTGGGAAAATGATGCTTACTACACACTCTGCCTACTGGACCAACGAAGATTTAGCCATGTTCCTTGCGAACGTGCTCTATTGCAAACGCGCCAAACCCGAAGAAGCCAAACCAGATACGGGCCGAAATTGAATCGTATTTATCTGTTATTTCCCCCGCCAAAAAAGTCTACTTTTTGCCTATTTTTGTCTAAATTCCCGATTTTCTCGCCATCTTGTGAAAGTAGAATCCCAGAACTTGCCCAGTATTTTTTTTTTGGCCCGTTTGTAATGTTCTTTGACCCGTTTGAGAAAAATCTCATCCCCATCTCTTTATTGCCAATTTTCTGAAATTTATTATTTTTTTCTTGAAAAACTCAGAATTTTGGGTAACCGCCTGAAATTTTGGAAAATTAGAATTTTCAGGAACCCAGAATTTCAAGAATTCTGAATTTTTTTGATTTTTCAAAATCGATTCCAACAAAAAATTTCATTGAATTCAATAAATCCAATGAAAAATTCTTCCAACCAAAAAAAAAAAACAACCAACAAACGAAACAGACAACAATGAGCCATCGAGGGCATGGCCTATGGGATGGTCGGGTACAACATGTACAATATCGATTGATTGAAAAACTAAAAAAAAAAAGAACCATCATTTAGAACGGGGCGTGGCTTCGAATGAAAGTGGGCATGGCCTATGGGATGGGTGGTACAAAAAAAATCCACAGAAAAAAGAAAAACTGAGCAATTTTAGGAAAATGAGAAAAAGATGAATATGGAGATGGAACAATAATTTCTAGGAGTCTAGAGGGGTAGAAATTTAGGAAATTTAGAGGAAAAATTGAATAAAAAATGATGGGACCGATCATTTACAAAAGAATTAGTCA</canonical>
            <polymorphic>CACCGCCCTCTCTGTGTGGCCGCATGGTGTAGTGGTTAGTGAACTACGCTTTTGCCCGCGCGACGAGGGTTCGTGTCCGACCGGTGGCAACTTTTTTTTGTTTTTTGTACAGAATTCAGAAATGAGTAAGAATGTGGGAAAATGATGCTTACTACACACTCTGCCTACTGGACCAACGAAGATTTAGCCATGTTCCTTGCGAACGTGCTCTATTGCAAACGCGCCAAACCCGAAGAAGCCAAACCAGATACGGGCCGAAATTGAATCGTATTTATCTGTTATTTCCCCCGCCAAAAAAGTCTACTTTTTGCCTATTTTTGTCTAAATTCCCGATTTTCTCGCCATCTTGTGAAAGTAGAATCCCAGAACTTGCCCAGTATTTTTTTTTTGGCCCGTTTGTAATGTTCTTTGACCCGTTTGAGAAAAATCTCATCCCCATCTCTTTATTGCCAATTTTCTGAAATTTATTATTTTTTTCTTGAAAAACTCAGAATTTTGGKTAACCGCCTGAAATTTTGGAAAATTAGAATTTTCAGGAACCCAGAATTTCAAGAATTCTGAATTTTTTTGATTTTTCAAAATCGATTCCAACAAAAAATTTCATTGAATTCAATAAATCCAATGAAAAATTCTTCCAACCAAAAAAAAAAAACAACCAACAAACGAAACAGACAACAATGAGCCATCGAGGGCATGGCCTATGGGATGGTCGGGTACAACATGTACAATATCGATTGATTGAAAAACTAAAAAAAAAAAGAACCATCATTTAGAACGGGGCGTGGCTTCGAATGAAAGTGGGCATGGCCTATGGGATGGGTGGTACAAAAAAAATCCACAGAAAAAAGAAAAACTGAGCAATTTTAGGAAAATGAGAAAAAGATGAATATGGAGATGGAACAATAATTTCTAGGAGTCTAGAGGGGTAGAAATTTAGGAAATTTAGAGGAAAAATTGAATAAAAAATGATGGGACCGATCATTTACAAAAGAATTAGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGTNACC</site>
                <isoschizomers>
                    <enzyme>BstEII</enzyme>
                    <enzyme>BstPI</enzyme>
                    <enzyme>Eco91I</enzyme>
                    <enzyme>EcoO65I</enzyme>
                    <enzyme>PspEI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATCTCTTTATTGCCAATTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATGGCTCATTGTTGTCTGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATCTCTTTATTGCCAATTTTCTGAAATTTATTATTTTTTTCTTGAAAAACTCAGAATTTTGGGTAACCGCCTGAAATTTTGGAAAATTAGAATTTTCAGGAACCCAGAATTTCAAGAATTCTGAATTTTTTTGATTTTTCAAAATCGATTCCAACAAAAAATTTCATTGAATTCAATAAATCCAATGAAAAATTCTTCCAACCAAAAAAAAAAAACAACCAACAAACGAAACAGACAACAATGAGCCAT</canonical_amplicon>
		<polymorphic_amplicon>CATCTCTTTATTGCCAATTTTCTGAAATTTATTATTTTTTTCTTGAAAAACTCAGAATTTTGGKTAACCGCCTGAAATTTTGGAAAATTAGAATTTTCAGGAACCCAGAATTTCAAGAATTCTGAATTTTTTTGATTTTTCAAAATCGATTCCAACAAAAAATTTCATTGAATTCAATAAATCCAATGAAAAATTCTTCCAACCAAAAAAAAAAAACAACCAACAAACGAAACAGACAACAATGAGCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21853</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>242111</contig_pos>
        <strand>+</strand>
        <context>TTCAAAATTT[C/T]CAGCCARATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTT</left_flank>
        <right_flank>CAGCCAGATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTGCGATCGACTTACTAGGAGAAGGGTACTAGTTATATGATGACCGTACTCATATGGTGTCATTAGAAGAACAAACTTGGACATATTGGGACAAATTGAGACCTTGATTTTTTGAATTTTAAAATTTCAGGTTTTGGGGGTCTGGAAAATGGGAAAGGTCTGAGAATCAGAATATCCAAAATTCAAACATTCCGAGAGAATTCGAAATTCCAAAAAAAAACCTCAAAAACCTGAAAATCCTGAAAAAATTTCAAAAGTACTGAAATTAAGATTTAAAAAAATCGAAATCTCCAAAATTAAGATTTATATATATTTTTTTGGATTTTGGGAGTTCTAGAATTTTTAAGATTTTTCAGATTCTTGAATTTTTGAGTTCTTTAAACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCAGATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTAGAATTAGTTTGAAGACAGTTTTCCTAGTCTTCTAGTGCTGGCCAAAAAAACCCAATTTGCAAAAAATTCCCGGCCAACAAAAACAACAAAACTTGTACACTTGAAAACACACAAACTGTTTTTTTCTAGTGTTCGAGACCATTGCTATCGAGTGTGTGAAAACCTATACAACAAAAAAGTGACCAGTT</canonical>
            <polymorphic>GATTTGCGATCGACTTACTAGGAGAAGGGTACTAGTTATATGATGACCGTACTCATATGGTGTCATTAGAAGAACAAACTTGGACATATTGGGACAAATTGAGACCTTGATTTTTTGAATTTTAAAATTTCAGGTTTTGGGGGTCTGGAAAATGGGAAAGGTCTGAGAATCAGAATATCCAAAATTCAAACATTCCGAGAGAATTCGAAATTCCAAAAAAAAACCTCAAAAACCTGAAAATCCTGAAAAAATTTCAAAAGTACTGAAATTAAGATTTAAAAAAATCGAAATCTCCAAAATTAAGATTTATATATATTTTTTTGGATTTTGGGAGTTCTAGAATTTTTAAGATTTTTCAGATTCTTGAATTTTTGAGTTCTTTAAACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTYCAGCCAGATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTAGAATTAGTTTGAAGACAGTTTTCCTAGTCTTCTAGTGCTGGCCAAAAAAACCCAATTTGCAAAAAATTCCCGGCCAACAAAAACAACAAAACTTGTACACTTGAAAACACACAAACTGTTTTTTTCTAGTGTTCGAGACCATTGCTATCGAGTGTGTGAAAACCTATACAACAAAAAAGTGACCAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTTCAGGGTTTCTTTAAATTG</pcr_primer_p1>
		<pcr_primer_p2>TACAGGCTGATACACTGAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>429</pcr_amplicon_size>
		<canonical_amplicon>AACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCAGATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTA</canonical_amplicon>
		<polymorphic_amplicon>AACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTYCAGCCAGATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21854</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>242118</contig_pos>
        <strand>+</strand>
        <context>TTTYCAGCCA[A/G]ATCAAAATGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCA</left_flank>
        <right_flank>ATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATCGACTTACTAGGAGAAGGGTACTAGTTATATGATGACCGTACTCATATGGTGTCATTAGAAGAACAAACTTGGACATATTGGGACAAATTGAGACCTTGATTTTTTGAATTTTAAAATTTCAGGTTTTGGGGGTCTGGAAAATGGGAAAGGTCTGAGAATCAGAATATCCAAAATTCAAACATTCCGAGAGAATTCGAAATTCCAAAAAAAAACCTCAAAAACCTGAAAATCCTGAAAAAATTTCAAAAGTACTGAAATTAAGATTTAAAAAAATCGAAATCTCCAAAATTAAGATTTATATATATTTTTTTGGATTTTGGGAGTTCTAGAATTTTTAAGATTTTTCAGATTCTTGAATTTTTGAGTTCTTTAAACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCAGATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTAGAATTAGTTTGAAGACAGTTTTCCTAGTCTTCTAGTGCTGGCCAAAAAAACCCAATTTGCAAAAAATTCCCGGCCAACAAAAACAACAAAACTTGTACACTTGAAAACACACAAACTGTTTTTTTCTAGTGTTCGAGACCATTGCTATCGAGTGTGTGAAAACCTATACAACAAAAAAGTGACCAGTTCCACGTA</canonical>
            <polymorphic>GATCGACTTACTAGGAGAAGGGTACTAGTTATATGATGACCGTACTCATATGGTGTCATTAGAAGAACAAACTTGGACATATTGGGACAAATTGAGACCTTGATTTTTTGAATTTTAAAATTTCAGGTTTTGGGGGTCTGGAAAATGGGAAAGGTCTGAGAATCAGAATATCCAAAATTCAAACATTCCGAGAGAATTCGAAATTCCAAAAAAAAACCTCAAAAACCTGAAAATCCTGAAAAAATTTCAAAAGTACTGAAATTAAGATTTAAAAAAATCGAAATCTCCAAAATTAAGATTTATATATATTTTTTTGGATTTTGGGAGTTCTAGAATTTTTAAGATTTTTCAGATTCTTGAATTTTTGAGTTCTTTAAACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCARATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTAGAATTAGTTTGAAGACAGTTTTCCTAGTCTTCTAGTGCTGGCCAAAAAAACCCAATTTGCAAAAAATTCCCGGCCAACAAAAACAACAAAACTTGTACACTTGAAAACACACAAACTGTTTTTTTCTAGTGTTCGAGACCATTGCTATCGAGTGTGTGAAAACCTATACAACAAAAAAGTGACCAGTTCCACGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>451 427 74 48 0</canonical_bands>
                <polymorphic_bands>451 427 122 0</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTTCAGGGTTTCTTTAAATTG</pcr_primer_p1>
		<pcr_primer_p2>TACAGGCTGATACACTGAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>429</pcr_amplicon_size>
		<canonical_amplicon>AACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCAGATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTA</canonical_amplicon>
		<polymorphic_amplicon>AACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCARATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21855</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>242145</contig_pos>
        <strand>+</strand>
        <context>TAGAAATCAA[C/G]AAGCTCTATA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTGAAATTCAAAATTTCCAGCCAGATCAAAATGAAAAATGTAGAAATCAA</left_flank>
        <right_flank>AAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTATATGATGACCGTACTCATATGGTGTCATTAGAAGAACAAACTTGGACATATTGGGACAAATTGAGACCTTGATTTTTTGAATTTTAAAATTTCAGGTTTTGGGGGTCTGGAAAATGGGAAAGGTCTGAGAATCAGAATATCCAAAATTCAAACATTCCGAGAGAATTCGAAATTCCAAAAAAAAACCTCAAAAACCTGAAAATCCTGAAAAAATTTCAAAAGTACTGAAATTAAGATTTAAAAAAATCGAAATCTCCAAAATTAAGATTTATATATATTTTTTTGGATTTTGGGAGTTCTAGAATTTTTAAGATTTTTCAGATTCTTGAATTTTTGAGTTCTTTAAACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCAGATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTAGAATTAGTTTGAAGACAGTTTTCCTAGTCTTCTAGTGCTGGCCAAAAAAACCCAATTTGCAAAAAATTCCCGGCCAACAAAAACAACAAAACTTGTACACTTGAAAACACACAAACTGTTTTTTTCTAGTGTTCGAGACCATTGCTATCGAGTGTGTGAAAACCTATACAACAAAAAAGTGACCAGTTCCACGTATCTACCATATATACATATGAATAAGGG</canonical>
            <polymorphic>GTTATATGATGACCGTACTCATATGGTGTCATTAGAAGAACAAACTTGGACATATTGGGACAAATTGAGACCTTGATTTTTTGAATTTTAAAATTTCAGGTTTTGGGGGTCTGGAAAATGGGAAAGGTCTGAGAATCAGAATATCCAAAATTCAAACATTCCGAGAGAATTCGAAATTCCAAAAAAAAACCTCAAAAACCTGAAAATCCTGAAAAAATTTCAAAAGTACTGAAATTAAGATTTAAAAAAATCGAAATCTCCAAAATTAAGATTTATATATATTTTTTTGGATTTTGGGAGTTCTAGAATTTTTAAGATTTTTCAGATTCTTGAATTTTTGAGTTCTTTAAACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCAGATCAAAATGAAAAATGTAGAAATCAASAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTAGAATTAGTTTGAAGACAGTTTTCCTAGTCTTCTAGTGCTGGCCAAAAAAACCCAATTTGCAAAAAATTCCCGGCCAACAAAAACAACAAAACTTGTACACTTGAAAACACACAAACTGTTTTTTTCTAGTGTTCGAGACCATTGCTATCGAGTGTGTGAAAACCTATACAACAAAAAAGTGACCAGTTCCACGTATCTACCATATATACATATGAATAAGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>217 198 168 111 97 95 88 26</canonical_bands>
                <polymorphic_bands>385 198 111 97 95 88 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTTCAGGGTTTCTTTAAATTG</pcr_primer_p1>
		<pcr_primer_p2>TACAGGCTGATACACTGAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>429</pcr_amplicon_size>
		<canonical_amplicon>AACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCAGATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTA</canonical_amplicon>
		<polymorphic_amplicon>AACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCAGATCAAAATGAAAAATGTAGAAATCAASAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21856</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>242175</contig_pos>
        <strand>+</strand>
        <context>TAAATTTAAA[C/T]WGAAAATKCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAA</left_flank>
        <right_flank>TGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAGAAGAACAAACTTGGACATATTGGGACAAATTGAGACCTTGATTTTTTGAATTTTAAAATTTCAGGTTTTGGGGGTCTGGAAAATGGGAAAGGTCTGAGAATCAGAATATCCAAAATTCAAACATTCCGAGAGAATTCGAAATTCCAAAAAAAAACCTCAAAAACCTGAAAATCCTGAAAAAATTTCAAAAGTACTGAAATTAAGATTTAAAAAAATCGAAATCTCCAAAATTAAGATTTATATATATTTTTTTGGATTTTGGGAGTTCTAGAATTTTTAAGATTTTTCAGATTCTTGAATTTTTGAGTTCTTTAAACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCAGATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTAGAATTAGTTTGAAGACAGTTTTCCTAGTCTTCTAGTGCTGGCCAAAAAAACCCAATTTGCAAAAAATTCCCGGCCAACAAAAACAACAAAACTTGTACACTTGAAAACACACAAACTGTTTTTTTCTAGTGTTCGAGACCATTGCTATCGAGTGTGTGAAAACCTATACAACAAAAAAGTGACCAGTTCCACGTATCTACCATATATACATATGAATAAGGGGGGGGGGGGGGGATGCATGACCATCCAACA</canonical>
            <polymorphic>ATTAGAAGAACAAACTTGGACATATTGGGACAAATTGAGACCTTGATTTTTTGAATTTTAAAATTTCAGGTTTTGGGGGTCTGGAAAATGGGAAAGGTCTGAGAATCAGAATATCCAAAATTCAAACATTCCGAGAGAATTCGAAATTCCAAAAAAAAACCTCAAAAACCTGAAAATCCTGAAAAAATTTCAAAAGTACTGAAATTAAGATTTAAAAAAATCGAAATCTCCAAAATTAAGATTTATATATATTTTTTTGGATTTTGGGAGTTCTAGAATTTTTAAGATTTTTCAGATTCTTGAATTTTTGAGTTCTTTAAACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCAGATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAAYTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTAGAATTAGTTTGAAGACAGTTTTCCTAGTCTTCTAGTGCTGGCCAAAAAAACCCAATTTGCAAAAAATTCCCGGCCAACAAAAACAACAAAACTTGTACACTTGAAAACACACAAACTGTTTTTTTCTAGTGTTCGAGACCATTGCTATCGAGTGTGTGAAAACCTATACAACAAAAAAGTGACCAGTTCCACGTATCTACCATATATACATATGAATAAGGGGGGGGGGGGGGGATGCATGACCATCCAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATGAAAAATGTAGAAATCAA</pcr_primer_p1>
		<pcr_primer_p2>TACAGGCTGATACACTGAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>CAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTA</canonical_amplicon>
		<polymorphic_amplicon>CAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAAYTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21857</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>242176</contig_pos>
        <strand>+</strand>
        <context>AAATTTAAAY[A/T]GAAAATKCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAAC</left_flank>
        <right_flank>GAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGAAGAACAAACTTGGACATATTGGGACAAATTGAGACCTTGATTTTTTGAATTTTAAAATTTCAGGTTTTGGGGGTCTGGAAAATGGGAAAGGTCTGAGAATCAGAATATCCAAAATTCAAACATTCCGAGAGAATTCGAAATTCCAAAAAAAAACCTCAAAAACCTGAAAATCCTGAAAAAATTTCAAAAGTACTGAAATTAAGATTTAAAAAAATCGAAATCTCCAAAATTAAGATTTATATATATTTTTTTGGATTTTGGGAGTTCTAGAATTTTTAAGATTTTTCAGATTCTTGAATTTTTGAGTTCTTTAAACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCAGATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTAGAATTAGTTTGAAGACAGTTTTCCTAGTCTTCTAGTGCTGGCCAAAAAAACCCAATTTGCAAAAAATTCCCGGCCAACAAAAACAACAAAACTTGTACACTTGAAAACACACAAACTGTTTTTTTCTAGTGTTCGAGACCATTGCTATCGAGTGTGTGAAAACCTATACAACAAAAAAGTGACCAGTTCCACGTATCTACCATATATACATATGAATAAGGGGGGGGGGGGGGGATGCATGACCATCCAACAA</canonical>
            <polymorphic>TTAGAAGAACAAACTTGGACATATTGGGACAAATTGAGACCTTGATTTTTTGAATTTTAAAATTTCAGGTTTTGGGGGTCTGGAAAATGGGAAAGGTCTGAGAATCAGAATATCCAAAATTCAAACATTCCGAGAGAATTCGAAATTCCAAAAAAAAACCTCAAAAACCTGAAAATCCTGAAAAAATTTCAAAAGTACTGAAATTAAGATTTAAAAAAATCGAAATCTCCAAAATTAAGATTTATATATATTTTTTTGGATTTTGGGAGTTCTAGAATTTTTAAGATTTTTCAGATTCTTGAATTTTTGAGTTCTTTAAACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCAGATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACWGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTAGAATTAGTTTGAAGACAGTTTTCCTAGTCTTCTAGTGCTGGCCAAAAAAACCCAATTTGCAAAAAATTCCCGGCCAACAAAAACAACAAAACTTGTACACTTGAAAACACACAAACTGTTTTTTTCTAGTGTTCGAGACCATTGCTATCGAGTGTGTGAAAACCTATACAACAAAAAAGTGACCAGTTCCACGTATCTACCATATATACATATGAATAAGGGGGGGGGGGGGGGATGCATGACCATCCAACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATGAAAAATGTAGAAATCAA</pcr_primer_p1>
		<pcr_primer_p2>TACAGGCTGATACACTGAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>CAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTA</canonical_amplicon>
		<polymorphic_amplicon>CAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACWGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21858</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>242183</contig_pos>
        <strand>+</strand>
        <context>AAYWGAAAAT[G/T]CAAAAATTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAAT</left_flank>
        <right_flank>CAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAAACTTGGACATATTGGGACAAATTGAGACCTTGATTTTTTGAATTTTAAAATTTCAGGTTTTGGGGGTCTGGAAAATGGGAAAGGTCTGAGAATCAGAATATCCAAAATTCAAACATTCCGAGAGAATTCGAAATTCCAAAAAAAAACCTCAAAAACCTGAAAATCCTGAAAAAATTTCAAAAGTACTGAAATTAAGATTTAAAAAAATCGAAATCTCCAAAATTAAGATTTATATATATTTTTTTGGATTTTGGGAGTTCTAGAATTTTTAAGATTTTTCAGATTCTTGAATTTTTGAGTTCTTTAAACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCAGATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTAGAATTAGTTTGAAGACAGTTTTCCTAGTCTTCTAGTGCTGGCCAAAAAAACCCAATTTGCAAAAAATTCCCGGCCAACAAAAACAACAAAACTTGTACACTTGAAAACACACAAACTGTTTTTTTCTAGTGTTCGAGACCATTGCTATCGAGTGTGTGAAAACCTATACAACAAAAAAGTGACCAGTTCCACGTATCTACCATATATACATATGAATAAGGGGGGGGGGGGGGGATGCATGACCATCCAACAACCACTAT</canonical>
            <polymorphic>AACAAACTTGGACATATTGGGACAAATTGAGACCTTGATTTTTTGAATTTTAAAATTTCAGGTTTTGGGGGTCTGGAAAATGGGAAAGGTCTGAGAATCAGAATATCCAAAATTCAAACATTCCGAGAGAATTCGAAATTCCAAAAAAAAACCTCAAAAACCTGAAAATCCTGAAAAAATTTCAAAAGTACTGAAATTAAGATTTAAAAAAATCGAAATCTCCAAAATTAAGATTTATATATATTTTTTTGGATTTTGGGAGTTCTAGAATTTTTAAGATTTTTCAGATTCTTGAATTTTTGAGTTCTTTAAACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCAGATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATKCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTAGAATTAGTTTGAAGACAGTTTTCCTAGTCTTCTAGTGCTGGCCAAAAAAACCCAATTTGCAAAAAATTCCCGGCCAACAAAAACAACAAAACTTGTACACTTGAAAACACACAAACTGTTTTTTTCTAGTGTTCGAGACCATTGCTATCGAGTGTGTGAAAACCTATACAACAAAAAAGTGACCAGTTCCACGTATCTACCATATATACATATGAATAAGGGGGGGGGGGGGGGATGCATGACCATCCAACAACCACTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>272 196 91 68 61 57 53 45 41 36 26 19 13 8 7 7</canonical_bands>
                <polymorphic_bands>272 196 91 68 61 57 53 49 45 41 26 19 8 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>209 196 61 57 53 52 43 41 35 33 31 28 26 24 21 19 17 13 11 8 8 7 7</canonical_bands>
                <polymorphic_bands>209 196 61 57 53 52 43 41 35 33 31 28 26 24 21 21 19 17 11 8 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAATGAAAAATGTAGAAATCAA</pcr_primer_p1>
		<pcr_primer_p2>TACAGGCTGATACACTGAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>CAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTA</canonical_amplicon>
		<polymorphic_amplicon>CAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATKCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21859</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>242461</contig_pos>
        <strand>+</strand>
        <context>TCTTCTAGTG[C/G]TGGCCAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTATCAGCCTGTAGAATTAGTTTGAAGACAGTTTTCCTAGTCTTCTAGTG</left_flank>
        <right_flank>TGGCCAAAAAAACCCAATTTGCAAAAAATTCCCGGCCAACAAAAACAACA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTCAGATTCTTGAATTTTTGAGTTCTTTAAACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCAGATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTAGAATTAGTTTGAAGACAGTTTTCCTAGTCTTCTAGTGCTGGCCAAAAAAACCCAATTTGCAAAAAATTCCCGGCCAACAAAAACAACAAAACTTGTACACTTGAAAACACACAAACTGTTTTTTTCTAGTGTTCGAGACCATTGCTATCGAGTGTGTGAAAACCTATACAACAAAAAAGTGACCAGTTCCACGTATCTACCATATATACATATGAATAAGGGGGGGGGGGGGGGATGCATGACCATCCAACAACCACTATATATGATTATATTATATCATCAGCCAAAAATGTTATGTTGATAAGTTTGTGTGCTTTACGGGACGACGGGAAAAGGGCTTTTGAAGTTGGGGGTCCGACGATTTTTATGGTCGGGAATGTTCTATAATTTATTACCCATATAGGTTCCTTTTGATCAAATAGAGAACGTATTTAACAGTTTGATTAGAGAGACTAATTAGAGACCCTATTAAACATCTCGGAAGAAGAATGGAAATGATTTTTTCGAGGGCTGGAGATTCCTGGATTTCTAAAGTTGA</canonical>
            <polymorphic>ATTTTTCAGATTCTTGAATTTTTGAGTTCTTTAAACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCAGATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTAGAATTAGTTTGAAGACAGTTTTCCTAGTCTTCTAGTGSTGGCCAAAAAAACCCAATTTGCAAAAAATTCCCGGCCAACAAAAACAACAAAACTTGTACACTTGAAAACACACAAACTGTTTTTTTCTAGTGTTCGAGACCATTGCTATCGAGTGTGTGAAAACCTATACAACAAAAAAGTGACCAGTTCCACGTATCTACCATATATACATATGAATAAGGGGGGGGGGGGGGGATGCATGACCATCCAACAACCACTATATATGATTATATTATATCATCAGCCAAAAATGTTATGTTGATAAGTTTGTGTGCTTTACGGGACGACGGGAAAAGGGCTTTTGAAGTTGGGGGTCCGACGATTTTTATGGTCGGGAATGTTCTATAATTTATTACCCATATAGGTTCCTTTTGATCAAATAGAGAACGTATTTAACAGTTTGATTAGAGAGACTAATTAGAGACCCTATTAAACATCTCGGAAGAAGAATGGAAATGATTTTTTCGAGGGCTGGAGATTCCTGGATTTCTAAAGTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGAAGCATTCTTCAGTGTAT</pcr_primer_p1>
		<pcr_primer_p2>TGTATATATGGTAGATACGTGGAAC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GGGAAGCATTCTTCAGTGTATCAGCCTGTAGAATTAGTTTGAAGACAGTTTTCCTAGTCTTCTAGTGCTGGCCAAAAAAACCCAATTTGCAAAAAATTCCCGGCCAACAAAAACAACAAAACTTGTACACTTGAAAACACACAAACTGTTTTTTTCTAGTGTTCGAGACCATTGCTATCGAGTGTGTGAAAACCTATACAACAAAAAAGTGACCAGTTCCACGTATCTACCATATATACA</canonical_amplicon>
		<polymorphic_amplicon>GGGAAGCATTCTTCAGTGTATCAGCCTGTAGAATTAGTTTGAAGACAGTTTTCCTAGTCTTCTAGTGSTGGCCAAAAAAACCCAATTTGCAAAAAATTCCCGGCCAACAAAAACAACAAAACTTGTACACTTGAAAACACACAAACTGTTTTTTTCTAGTGTTCGAGACCATTGCTATCGAGTGTGTGAAAACCTATACAACAAAAAAGTGACCAGTTCCACGTATCTACCATATATACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21860</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>245010</contig_pos>
        <strand></strand>
        <context>CGGTAATTAG[A/G]RGGATTTTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAG</left_flank>
        <right_flank>AGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGCCACTTGGAAGATCCTAGACCACCTTGAACTTACGAGATAATTTGAAAGTTTCATATGCATTTTTAGAAGCTTCTGGACCGTTTGAAAGCTCCTTGGCCACTAAATTCTTGTAAAAAAACAACAAATTTAGCAAGAAATAATGATGTTTTCGAAGGGAAGCATTCTTAGCTTCTCATTGTTTCCAACAAGAGACTCTTTCTCCCCAGTAGTAGGCCTTGTTCTTTCCGGATACAAGCGGATATCATGAATTTATTGTTCTCTTCTTCTTCTTCTTCTTTTTGTTATTGTTGTCCCTCTCTCTCACAGAGAAAAAGAGAAAAAGAGAAAATAATAGGAGTCGGCTGCTCTTTTTGACCCCCCCCCCCCCCTATCCCACTTTTTGTTTAGATGCCTCGAGTATTGCCTAATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGTTTCGAGACATTAGGGATTTTCGATAGTTTTAGGTTTTTTTGGGATTTTTATGATTTCAGGATTTTCGGTTTTTTTTGGGATCGTTAGAAATTTTAGGGCTTCAGAATTTTCAAAATTTCTGCGATTTTCAGAATTTAAGGGTTTTTGGGGTTTTTTCGAATTCTACTGTTTTTGAGACTTCATGGATTTTCAGGATTTTTTTTAGATTTTTGGAATTTCAAAGTTTCCAGGATACCCAGATTTTTGGGTTTTAAAGTTTCTGGGATTTTTGAAGTTTTTGGGCCTTTTGTGATTTCGGCATTTCTAGAATTTTTGGTATTTTTGGGATTATTAGATTTATAGGATAATTGAGAATGT</canonical>
            <polymorphic>AGGCCACTTGGAAGATCCTAGACCACCTTGAACTTACGAGATAATTTGAAAGTTTCATATGCATTTTTAGAAGCTTCTGGACCGTTTGAAAGCTCCTTGGCCACTAAATTCTTGTAAAAAAACAACAAATTTAGCAAGAAATAATGATGTTTTCGAAGGGAAGCATTCTTAGCTTCTCATTGTTTCCAACAAGAGACTCTTTCTCCCCAGTAGTAGGCCTTGTTCTTTCCGGATACAAGCGGATATCATGAATTTATTGTTCTCTTCTTCTTCTTCTTCTTTTTGTTATTGTTGTCCCTCTCTCTCACAGAGAAAAAGAGAAAAAGAGAAAATAATAGGAGTCGGCTGCTCTTTTTGACCCCCCCCCCCCCCTATCCCACTTTTTGTTTAGATGCCTCGAGTATTGCCTAATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGRAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGTTTCGAGACATTAGGGATTTTCGATAGTTTTAGGTTTTTTTGGGATTTTTATGATTTCAGGATTTTCGGTTTTTTTTGGGATCGTTAGAAATTTTAGGGCTTCAGAATTTTCAAAATTTCTGCGATTTTCAGAATTTAAGGGTTTTTGGGGTTTTTTCGAATTCTACTGTTTTTGAGACTTCATGGATTTTCAGGATTTTTTTTAGATTTTTGGAATTTCAAAGTTTCCAGGATACCCAGATTTTTGGGTTTTAAAGTTTCTGGGATTTTTGAAGTTTTTGGGCCTTTTGTGATTTCGGCATTTCTAGAATTTTTGGTATTTTTGGGATTATTAGATTTATAGGATAATTGAGAATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTATTGCCTAATCAAACAGAG</pcr_primer_p1>
		<pcr_primer_p2>ACTACGGAAAATCATGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAGTATTGCCTAATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGT</canonical_amplicon>
		<polymorphic_amplicon>GAGTATTGCCTAATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGRAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21861</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>262147</contig_pos>
        <strand>+</strand>
        <context>TCGACACCAT[C/G]GGTGATAAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAGCAAACACTATGCCCAACAAACGTCCTTTTTCCCCTATTCGACACCAT</left_flank>
        <right_flank>GGTGATAAGGACAACATCGAGTTATCAATAATGTGCTCTGTTTCTCTGGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATTATCTTAAGCTCCGCCCCTTTTGAAAAATGTGCGGGGCCAAAATTCCAGGTATGTAAGAATCCACGAATCTAACAATCCAGGAATTTAGGAATCCAAAAATCCAGGAATCTAAGAAACCAGGAATCTAAAATTTCAAAAATCTAAGAATCTAGGAATCTAGGAATTCAAGAATCTAAGATTGCCGTCGAGCTACACGGTCACAGCCAAAGTTCGCCAAAGCTCCAGAGTCCACCAGAGCACATTTGCAACAACCCAAAGACCGTGCCTACCTCATTATCATCACTCTTCGCCTTTCTATCCTTGCTCTTCCGACCAAGAACCATGGTTTTTTTTAGCCGAATAGACCCCAGAAAGTCTCAGAAATTTCCAGAAAAATCCGACAGAATAAAATTTCAAATTTCAGCCAAAAAGCGTAAAAATATGAAGCAGAATAGTTTGACAAAGGAGCAAACACTATGCCCAACAAACGTCCTTTTTCCCCTATTCGACACCATGGGTGATAAGGACAACATCGAGTTATCAATAATGTGCTCTGTTTCTCTGGAGTCTCTCGCTCAATATCTCTCTCGATTTTTCTTCTTCTTCTATCAAAGTATCAAAAATGACACACAAAAAAGGTCGACGAGAGTGCAAACGACGGCGACACAGTATCGGAAGTAGCCTTTTTTCACTTTTTTTTCTCGAAAAAAAGGAAAAAAAGAAGATAGAGAACAGAGATATGAAAATAGTGTGAAACAATAAATGGGAAAAATCGGCTGAAAAATCGACTAAAAAGGCCGAAAAAAGAGGTCACGAGGACATCCGGACCGACAGGTGTACAGACAGATTCAGACCAACAGCCCAATATCGACGAAGTTCGGGTCAGAAAGCACTGAAAAATTGGCTGGAATTCGGCTGAATTATAGATCCAAAAATCTTCGAAAACGCTCCAAAACGTTTCTTTCTCTAGTAAAATTGGTCAAAACCGATAGAAAATAAATTGAAGCTAATTTCAG</canonical>
            <polymorphic>TAATTATCTTAAGCTCCGCCCCTTTTGAAAAATGTGCGGGGCCAAAATTCCAGGTATGTAAGAATCCACGAATCTAACAATCCAGGAATTTAGGAATCCAAAAATCCAGGAATCTAAGAAACCAGGAATCTAAAATTTCAAAAATCTAAGAATCTAGGAATCTAGGAATTCAAGAATCTAAGATTGCCGTCGAGCTACACGGTCACAGCCAAAGTTCGCCAAAGCTCCAGAGTCCACCAGAGCACATTTGCAACAACCCAAAGACCGTGCCTACCTCATTATCATCACTCTTCGCCTTTCTATCCTTGCTCTTCCGACCAAGAACCATGGTTTTTTTTAGCCGAATAGACCCCAGAAAGTCTCAGAAATTTCCAGAAAAATCCGACAGAATAAAATTTCAAATTTCAGCCAAAAAGCGTAAAAATATGAAGCAGAATAGTTTGACAAAGGAGCAAACACTATGCCCAACAAACGTCCTTTTTCCCCTATTCGACACCATSGGTGATAAGGACAACATCGAGTTATCAATAATGTGCTCTGTTTCTCTGGAGTCTCTCGCTCAATATCTCTCTCGATTTTTCTTCTTCTTCTATCAAAGTATCAAAAATGACACACAAAAAAGGTCGACGAGAGTGCAAACGACGGCGACACAGTATCGGAAGTAGCCTTTTTTCACTTTTTTTTCTCGAAAAAAAGGAAAAAAAGAAGATAGAGAACAGAGATATGAAAATAGTGTGAAACAATAAATGGGAAAAATCGGCTGAAAAATCGACTAAAAAGGCCGAAAAAAGAGGTCACGAGGACATCCGGACCGACAGGTGTACAGACAGATTCAGACCAACAGCCCAATATCGACGAAGTTCGGGTCAGAAAGCACTGAAAAATTGGCTGGAATTCGGCTGAATTATAGATCCAAAAATCTTCGAAAACGCTCCAAAACGTTTCTTTCTCTAGTAAAATTGGTCAAAACCGATAGAAAATAAATTGAAGCTAATTTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>504 325 171</canonical_bands>
                <polymorphic_bands>675 325</polymorphic_bands>
            </assay>
            <assay>
                <site>CCATGG</site>
                <isoschizomers>
                    <enzyme>Bsp19I</enzyme>
                    <enzyme>NcoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 325 171</canonical_bands>
                <polymorphic_bands>675 325</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>504 325 171</canonical_bands>
                <polymorphic_bands>675 325</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>504 325 171</canonical_bands>
                <polymorphic_bands>675 325</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 326 171</canonical_bands>
                <polymorphic_bands>674 326</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAAAATCCGACAGAATAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGTGTGTCATTTTTGATACTTTG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AGAAAAATCCGACAGAATAAAATTTCAAATTTCAGCCAAAAAGCGTAAAAATATGAAGCAGAATAGTTTGACAAAGGAGCAAACACTATGCCCAACAAACGTCCTTTTTCCCCTATTCGACACCATGGGTGATAAGGACAACATCGAGTTATCAATAATGTGCTCTGTTTCTCTGGAGTCTCTCGCTCAATATCTCTCTCGATTTTTCTTCTTCTTCTATCAAAGTATCAAAAATGACACACA</canonical_amplicon>
		<polymorphic_amplicon>AGAAAAATCCGACAGAATAAAATTTCAAATTTCAGCCAAAAAGCGTAAAAATATGAAGCAGAATAGTTTGACAAAGGAGCAAACACTATGCCCAACAAACGTCCTTTTTCCCCTATTCGACACCATSGGTGATAAGGACAACATCGAGTTATCAATAATGTGCTCTGTTTCTCTGGAGTCTCTCGCTCAATATCTCTCTCGATTTTTCTTCTTCTTCTATCAAAGTATCAAAAATGACACACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21862</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>262162</contig_pos>
        <strand>+</strand>
        <context>ATAAGGACAA[A/C]ATCGAGTTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCAACAAACGTCCTTTTTCCCCTATTCGACACCATGGGTGATAAGGACAA</left_flank>
        <right_flank>ATCGAGTTATCAATAATGTGCTCTGTTTCTCTGGAGTCTCTCGCTCAATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGCCCCTTTTGAAAAATGTGCGGGGCCAAAATTCCAGGTATGTAAGAATCCACGAATCTAACAATCCAGGAATTTAGGAATCCAAAAATCCAGGAATCTAAGAAACCAGGAATCTAAAATTTCAAAAATCTAAGAATCTAGGAATCTAGGAATTCAAGAATCTAAGATTGCCGTCGAGCTACACGGTCACAGCCAAAGTTCGCCAAAGCTCCAGAGTCCACCAGAGCACATTTGCAACAACCCAAAGACCGTGCCTACCTCATTATCATCACTCTTCGCCTTTCTATCCTTGCTCTTCCGACCAAGAACCATGGTTTTTTTTAGCCGAATAGACCCCAGAAAGTCTCAGAAATTTCCAGAAAAATCCGACAGAATAAAATTTCAAATTTCAGCCAAAAAGCGTAAAAATATGAAGCAGAATAGTTTGACAAAGGAGCAAACACTATGCCCAACAAACGTCCTTTTTCCCCTATTCGACACCATGGGTGATAAGGACAACATCGAGTTATCAATAATGTGCTCTGTTTCTCTGGAGTCTCTCGCTCAATATCTCTCTCGATTTTTCTTCTTCTTCTATCAAAGTATCAAAAATGACACACAAAAAAGGTCGACGAGAGTGCAAACGACGGCGACACAGTATCGGAAGTAGCCTTTTTTCACTTTTTTTTCTCGAAAAAAAGGAAAAAAAGAAGATAGAGAACAGAGATATGAAAATAGTGTGAAACAATAAATGGGAAAAATCGGCTGAAAAATCGACTAAAAAGGCCGAAAAAAGAGGTCACGAGGACATCCGGACCGACAGGTGTACAGACAGATTCAGACCAACAGCCCAATATCGACGAAGTTCGGGTCAGAAAGCACTGAAAAATTGGCTGGAATTCGGCTGAATTATAGATCCAAAAATCTTCGAAAACGCTCCAAAACGTTTCTTTCTCTAGTAAAATTGGTCAAAACCGATAGAAAATAAATTGAAGCTAATTTCAGAGCGTAGAGTAGACT</canonical>
            <polymorphic>CCGCCCCTTTTGAAAAATGTGCGGGGCCAAAATTCCAGGTATGTAAGAATCCACGAATCTAACAATCCAGGAATTTAGGAATCCAAAAATCCAGGAATCTAAGAAACCAGGAATCTAAAATTTCAAAAATCTAAGAATCTAGGAATCTAGGAATTCAAGAATCTAAGATTGCCGTCGAGCTACACGGTCACAGCCAAAGTTCGCCAAAGCTCCAGAGTCCACCAGAGCACATTTGCAACAACCCAAAGACCGTGCCTACCTCATTATCATCACTCTTCGCCTTTCTATCCTTGCTCTTCCGACCAAGAACCATGGTTTTTTTTAGCCGAATAGACCCCAGAAAGTCTCAGAAATTTCCAGAAAAATCCGACAGAATAAAATTTCAAATTTCAGCCAAAAAGCGTAAAAATATGAAGCAGAATAGTTTGACAAAGGAGCAAACACTATGCCCAACAAACGTCCTTTTTCCCCTATTCGACACCATGGGTGATAAGGACAAMATCGAGTTATCAATAATGTGCTCTGTTTCTCTGGAGTCTCTCGCTCAATATCTCTCTCGATTTTTCTTCTTCTTCTATCAAAGTATCAAAAATGACACACAAAAAAGGTCGACGAGAGTGCAAACGACGGCGACACAGTATCGGAAGTAGCCTTTTTTCACTTTTTTTTCTCGAAAAAAAGGAAAAAAAGAAGATAGAGAACAGAGATATGAAAATAGTGTGAAACAATAAATGGGAAAAATCGGCTGAAAAATCGACTAAAAAGGCCGAAAAAAGAGGTCACGAGGACATCCGGACCGACAGGTGTACAGACAGATTCAGACCAACAGCCCAATATCGACGAAGTTCGGGTCAGAAAGCACTGAAAAATTGGCTGGAATTCGGCTGAATTATAGATCCAAAAATCTTCGAAAACGCTCCAAAACGTTTCTTTCTCTAGTAAAATTGGTCAAAACCGATAGAAAATAAATTGAAGCTAATTTCAGAGCGTAGAGTAGACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAAATCCGACAGAATAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGTGTGTCATTTTTGATACTTTG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AGAAAAATCCGACAGAATAAAATTTCAAATTTCAGCCAAAAAGCGTAAAAATATGAAGCAGAATAGTTTGACAAAGGAGCAAACACTATGCCCAACAAACGTCCTTTTTCCCCTATTCGACACCATGGGTGATAAGGACAACATCGAGTTATCAATAATGTGCTCTGTTTCTCTGGAGTCTCTCGCTCAATATCTCTCTCGATTTTTCTTCTTCTTCTATCAAAGTATCAAAAATGACACACA</canonical_amplicon>
		<polymorphic_amplicon>AGAAAAATCCGACAGAATAAAATTTCAAATTTCAGCCAAAAAGCGTAAAAATATGAAGCAGAATAGTTTGACAAAGGAGCAAACACTATGCCCAACAAACGTCCTTTTTCCCCTATTCGACACCATGGGTGATAAGGACAAMATCGAGTTATCAATAATGTGCTCTGTTTCTCTGGAGTCTCTCGCTCAATATCTCTCTCGATTTTTCTTCTTCTTCTATCAAAGTATCAAAAATGACACACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21863</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>262205</contig_pos>
        <strand>+</strand>
        <context>GGAGTCTCTC[A/G]CTCAATATCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGACAACATCGAGTTATCAATAATGTGCTCTGTTTCTCTGGAGTCTCTC</left_flank>
        <right_flank>CTCAATATCTCTCTCGATTTTTCTTCTTCTTCTATCAAAGTATCAAAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGAATCCACGAATCTAACAATCCAGGAATTTAGGAATCCAAAAATCCAGGAATCTAAGAAACCAGGAATCTAAAATTTCAAAAATCTAAGAATCTAGGAATCTAGGAATTCAAGAATCTAAGATTGCCGTCGAGCTACACGGTCACAGCCAAAGTTCGCCAAAGCTCCAGAGTCCACCAGAGCACATTTGCAACAACCCAAAGACCGTGCCTACCTCATTATCATCACTCTTCGCCTTTCTATCCTTGCTCTTCCGACCAAGAACCATGGTTTTTTTTAGCCGAATAGACCCCAGAAAGTCTCAGAAATTTCCAGAAAAATCCGACAGAATAAAATTTCAAATTTCAGCCAAAAAGCGTAAAAATATGAAGCAGAATAGTTTGACAAAGGAGCAAACACTATGCCCAACAAACGTCCTTTTTCCCCTATTCGACACCATGGGTGATAAGGACAACATCGAGTTATCAATAATGTGCTCTGTTTCTCTGGAGTCTCTCGCTCAATATCTCTCTCGATTTTTCTTCTTCTTCTATCAAAGTATCAAAAATGACACACAAAAAAGGTCGACGAGAGTGCAAACGACGGCGACACAGTATCGGAAGTAGCCTTTTTTCACTTTTTTTTCTCGAAAAAAAGGAAAAAAAGAAGATAGAGAACAGAGATATGAAAATAGTGTGAAACAATAAATGGGAAAAATCGGCTGAAAAATCGACTAAAAAGGCCGAAAAAAGAGGTCACGAGGACATCCGGACCGACAGGTGTACAGACAGATTCAGACCAACAGCCCAATATCGACGAAGTTCGGGTCAGAAAGCACTGAAAAATTGGCTGGAATTCGGCTGAATTATAGATCCAAAAATCTTCGAAAACGCTCCAAAACGTTTCTTTCTCTAGTAAAATTGGTCAAAACCGATAGAAAATAAATTGAAGCTAATTTCAGAGCGTAGAGTAGACTAATTCTATGTGTCATCTATTCATTCTTTGACGGATTAGAGATA</canonical>
            <polymorphic>TAAGAATCCACGAATCTAACAATCCAGGAATTTAGGAATCCAAAAATCCAGGAATCTAAGAAACCAGGAATCTAAAATTTCAAAAATCTAAGAATCTAGGAATCTAGGAATTCAAGAATCTAAGATTGCCGTCGAGCTACACGGTCACAGCCAAAGTTCGCCAAAGCTCCAGAGTCCACCAGAGCACATTTGCAACAACCCAAAGACCGTGCCTACCTCATTATCATCACTCTTCGCCTTTCTATCCTTGCTCTTCCGACCAAGAACCATGGTTTTTTTTAGCCGAATAGACCCCAGAAAGTCTCAGAAATTTCCAGAAAAATCCGACAGAATAAAATTTCAAATTTCAGCCAAAAAGCGTAAAAATATGAAGCAGAATAGTTTGACAAAGGAGCAAACACTATGCCCAACAAACGTCCTTTTTCCCCTATTCGACACCATGGGTGATAAGGACAACATCGAGTTATCAATAATGTGCTCTGTTTCTCTGGAGTCTCTCRCTCAATATCTCTCTCGATTTTTCTTCTTCTTCTATCAAAGTATCAAAAATGACACACAAAAAAGGTCGACGAGAGTGCAAACGACGGCGACACAGTATCGGAAGTAGCCTTTTTTCACTTTTTTTTCTCGAAAAAAAGGAAAAAAAGAAGATAGAGAACAGAGATATGAAAATAGTGTGAAACAATAAATGGGAAAAATCGGCTGAAAAATCGACTAAAAAGGCCGAAAAAAGAGGTCACGAGGACATCCGGACCGACAGGTGTACAGACAGATTCAGACCAACAGCCCAATATCGACGAAGTTCGGGTCAGAAAGCACTGAAAAATTGGCTGGAATTCGGCTGAATTATAGATCCAAAAATCTTCGAAAACGCTCCAAAACGTTTCTTTCTCTAGTAAAATTGGTCAAAACCGATAGAAAATAAATTGAAGCTAATTTCAGAGCGTAGAGTAGACTAATTCTATGTGTCATCTATTCATTCTTTGACGGATTAGAGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAAATCCGACAGAATAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGTGTGTCATTTTTGATACTTTG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AGAAAAATCCGACAGAATAAAATTTCAAATTTCAGCCAAAAAGCGTAAAAATATGAAGCAGAATAGTTTGACAAAGGAGCAAACACTATGCCCAACAAACGTCCTTTTTCCCCTATTCGACACCATGGGTGATAAGGACAACATCGAGTTATCAATAATGTGCTCTGTTTCTCTGGAGTCTCTCGCTCAATATCTCTCTCGATTTTTCTTCTTCTTCTATCAAAGTATCAAAAATGACACACA</canonical_amplicon>
		<polymorphic_amplicon>AGAAAAATCCGACAGAATAAAATTTCAAATTTCAGCCAAAAAGCGTAAAAATATGAAGCAGAATAGTTTGACAAAGGAGCAAACACTATGCCCAACAAACGTCCTTTTTCCCCTATTCGACACCATGGGTGATAAGGACAACATCGAGTTATCAATAATGTGCTCTGTTTCTCTGGAGTCTCTCRCTCAATATCTCTCTCGATTTTTCTTCTTCTTCTATCAAAGTATCAAAAATGACACACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21864</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>262279</contig_pos>
        <strand>+</strand>
        <context>GGTCGACGAG[A/G]GTGCAAACGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTTCTTCTATCAAAGTATCAAAAATGACACACAAAAAAGGTCGACGAG</left_flank>
        <right_flank>GTGCAAACGACGGCGACACAGTATCGGAAGTAGCCTTTTTTCACTTTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTCAAAAATCTAAGAATCTAGGAATCTAGGAATTCAAGAATCTAAGATTGCCGTCGAGCTACACGGTCACAGCCAAAGTTCGCCAAAGCTCCAGAGTCCACCAGAGCACATTTGCAACAACCCAAAGACCGTGCCTACCTCATTATCATCACTCTTCGCCTTTCTATCCTTGCTCTTCCGACCAAGAACCATGGTTTTTTTTAGCCGAATAGACCCCAGAAAGTCTCAGAAATTTCCAGAAAAATCCGACAGAATAAAATTTCAAATTTCAGCCAAAAAGCGTAAAAATATGAAGCAGAATAGTTTGACAAAGGAGCAAACACTATGCCCAACAAACGTCCTTTTTCCCCTATTCGACACCATGGGTGATAAGGACAACATCGAGTTATCAATAATGTGCTCTGTTTCTCTGGAGTCTCTCGCTCAATATCTCTCTCGATTTTTCTTCTTCTTCTATCAAAGTATCAAAAATGACACACAAAAAAGGTCGACGAGAGTGCAAACGACGGCGACACAGTATCGGAAGTAGCCTTTTTTCACTTTTTTTTCTCGAAAAAAAGGAAAAAAAGAAGATAGAGAACAGAGATATGAAAATAGTGTGAAACAATAAATGGGAAAAATCGGCTGAAAAATCGACTAAAAAGGCCGAAAAAAGAGGTCACGAGGACATCCGGACCGACAGGTGTACAGACAGATTCAGACCAACAGCCCAATATCGACGAAGTTCGGGTCAGAAAGCACTGAAAAATTGGCTGGAATTCGGCTGAATTATAGATCCAAAAATCTTCGAAAACGCTCCAAAACGTTTCTTTCTCTAGTAAAATTGGTCAAAACCGATAGAAAATAAATTGAAGCTAATTTCAGAGCGTAGAGTAGACTAATTCTATGTGTCATCTATTCATTCTTTGACGGATTAGAGATAGAGAGAAATTGAGAGACGCAGAATTTTTCATCTTGGAAATTCGAAACCCAAAAAACATCGTCTGGAAATGCTGA</canonical>
            <polymorphic>AAATTTCAAAAATCTAAGAATCTAGGAATCTAGGAATTCAAGAATCTAAGATTGCCGTCGAGCTACACGGTCACAGCCAAAGTTCGCCAAAGCTCCAGAGTCCACCAGAGCACATTTGCAACAACCCAAAGACCGTGCCTACCTCATTATCATCACTCTTCGCCTTTCTATCCTTGCTCTTCCGACCAAGAACCATGGTTTTTTTTAGCCGAATAGACCCCAGAAAGTCTCAGAAATTTCCAGAAAAATCCGACAGAATAAAATTTCAAATTTCAGCCAAAAAGCGTAAAAATATGAAGCAGAATAGTTTGACAAAGGAGCAAACACTATGCCCAACAAACGTCCTTTTTCCCCTATTCGACACCATGGGTGATAAGGACAACATCGAGTTATCAATAATGTGCTCTGTTTCTCTGGAGTCTCTCGCTCAATATCTCTCTCGATTTTTCTTCTTCTTCTATCAAAGTATCAAAAATGACACACAAAAAAGGTCGACGAGRGTGCAAACGACGGCGACACAGTATCGGAAGTAGCCTTTTTTCACTTTTTTTTCTCGAAAAAAAGGAAAAAAAGAAGATAGAGAACAGAGATATGAAAATAGTGTGAAACAATAAATGGGAAAAATCGGCTGAAAAATCGACTAAAAAGGCCGAAAAAAGAGGTCACGAGGACATCCGGACCGACAGGTGTACAGACAGATTCAGACCAACAGCCCAATATCGACGAAGTTCGGGTCAGAAAGCACTGAAAAATTGGCTGGAATTCGGCTGAATTATAGATCCAAAAATCTTCGAAAACGCTCCAAAACGTTTCTTTCTCTAGTAAAATTGGTCAAAACCGATAGAAAATAAATTGAAGCTAATTTCAGAGCGTAGAGTAGACTAATTCTATGTGTCATCTATTCATTCTTTGACGGATTAGAGATAGAGAGAAATTGAGAGACGCAGAATTTTTCATCTTGGAAATTCGAAACCCAAAAAACATCGTCTGGAAATGCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGAGTTATCAATAATGTGCTCT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCCCATTTATTGTTTCAC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TCGAGTTATCAATAATGTGCTCTGTTTCTCTGGAGTCTCTCGCTCAATATCTCTCTCGATTTTTCTTCTTCTTCTATCAAAGTATCAAAAATGACACACAAAAAAGGTCGACGAGAGTGCAAACGACGGCGACACAGTATCGGAAGTAGCCTTTTTTCACTTTTTTTTCTCGAAAAAAAGGAAAAAAAGAAGATAGAGAACAGAGATATGAAAATAGTGTGAAACAATAAATGGGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TCGAGTTATCAATAATGTGCTCTGTTTCTCTGGAGTCTCTCGCTCAATATCTCTCTCGATTTTTCTTCTTCTTCTATCAAAGTATCAAAAATGACACACAAAAAAGGTCGACGAGRGTGCAAACGACGGCGACACAGTATCGGAAGTAGCCTTTTTTCACTTTTTTTTCTCGAAAAAAAGGAAAAAAAGAAGATAGAGAACAGAGATATGAAAATAGTGTGAAACAATAAATGGGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21866</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>262351</contig_pos>
        <strand></strand>
        <context>AAGGAAAAAA[A/T]GAAGATAGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATCGGAAGTAGCCTTTTTTCACTTTTTTTTCTCGAAAAAAAGGAAAAAA</left_flank>
        <right_flank>GAAGATAGAGAACAGAGATATGAAAATAGTGTGAAACAATAAATGGGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGCCAAAGTTCGCCAAAGCTCCAGAGTCCACCAGAGCACATTTGCAACAACCCAAAGACCGTGCCTACCTCATTATCATCACTCTTCGCCTTTCTATCCTTGCTCTTCCGACCAAGAACCATGGTTTTTTTTAGCCGAATAGACCCCAGAAAGTCTCAGAAATTTCCAGAAAAATCCGACAGAATAAAATTTCAAATTTCAGCCAAAAAGCGTAAAAATATGAAGCAGAATAGTTTGACAAAGGAGCAAACACTATGCCCAACAAACGTCCTTTTTCCCCTATTCGACACCATGGGTGATAAGGACAACATCGAGTTATCAATAATGTGCTCTGTTTCTCTGGAGTCTCTCGCTCAATATCTCTCTCGATTTTTCTTCTTCTTCTATCAAAGTATCAAAAATGACACACAAAAAAGGTCGACGAGAGTGCAAACGACGGCGACACAGTATCGGAAGTAGCCTTTTTTCACTTTTTTTTCTCGAAAAAAAGGAAAAAAAGAAGATAGAGAACAGAGATATGAAAATAGTGTGAAACAATAAATGGGAAAAATCGGCTGAAAAATCGACTAAAAAGGCCGAAAAAAGAGGTCACGAGGACATCCGGACCGACAGGTGTACAGACAGATTCAGACCAACAGCCCAATATCGACGAAGTTCGGGTCAGAAAGCACTGAAAAATTGGCTGGAATTCGGCTGAATTATAGATCCAAAAATCTTCGAAAACGCTCCAAAACGTTTCTTTCTCTAGTAAAATTGGTCAAAACCGATAGAAAATAAATTGAAGCTAATTTCAGAGCGTAGAGTAGACTAATTCTATGTGTCATCTATTCATTCTTTGACGGATTAGAGATAGAGAGAAATTGAGAGACGCAGAATTTTTCATCTTGGAAATTCGAAACCCAAAAAACATCGTCTGGAAATGCTGAAGTCTAGAATCTAGGAATCTACGAATCTAGGAAACTAGGAATCAAGGATCCAGGTGACCCGGAATCCAAGGG</canonical>
            <polymorphic>ACAGCCAAAGTTCGCCAAAGCTCCAGAGTCCACCAGAGCACATTTGCAACAACCCAAAGACCGTGCCTACCTCATTATCATCACTCTTCGCCTTTCTATCCTTGCTCTTCCGACCAAGAACCATGGTTTTTTTTAGCCGAATAGACCCCAGAAAGTCTCAGAAATTTCCAGAAAAATCCGACAGAATAAAATTTCAAATTTCAGCCAAAAAGCGTAAAAATATGAAGCAGAATAGTTTGACAAAGGAGCAAACACTATGCCCAACAAACGTCCTTTTTCCCCTATTCGACACCATGGGTGATAAGGACAACATCGAGTTATCAATAATGTGCTCTGTTTCTCTGGAGTCTCTCGCTCAATATCTCTCTCGATTTTTCTTCTTCTTCTATCAAAGTATCAAAAATGACACACAAAAAAGGTCGACGAGAGTGCAAACGACGGCGACACAGTATCGGAAGTAGCCTTTTTTCACTTTTTTTTCTCGAAAAAAAGGAAAAAAWGAAGATAGAGAACAGAGATATGAAAATAGTGTGAAACAATAAATGGGAAAAATCGGCTGAAAAATCGACTAAAAAGGCCGAAAAAAGAGGTCACGAGGACATCCGGACCGACAGGTGTACAGACAGATTCAGACCAACAGCCCAATATCGACGAAGTTCGGGTCAGAAAGCACTGAAAAATTGGCTGGAATTCGGCTGAATTATAGATCCAAAAATCTTCGAAAACGCTCCAAAACGTTTCTTTCTCTAGTAAAATTGGTCAAAACCGATAGAAAATAAATTGAAGCTAATTTCAGAGCGTAGAGTAGACTAATTCTATGTGTCATCTATTCATTCTTTGACGGATTAGAGATAGAGAGAAATTGAGAGACGCAGAATTTTTCATCTTGGAAATTCGAAACCCAAAAAACATCGTCTGGAAATGCTGAAGTCTAGAATCTAGGAATCTACGAATCTAGGAAACTAGGAATCAAGGATCCAGGTGACCCGGAATCCAAGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAGTATCAAAAATGACACACA</pcr_primer_p1>
		<pcr_primer_p2>TCTGAATCTGTCTGTACACCTG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAAAGTATCAAAAATGACACACAAAAAAGGTCGACGAGAGTGCAAACGACGGCGACACAGTATCGGAAGTAGCCTTTTTTCACTTTTTTTTCTCGAAAAAAAGGAAAAAAAGAAGATAGAGAACAGAGATATGAAAATAGTGTGAAACAATAAATGGGAAAAATCGGCTGAAAAATCGACTAAAAAGGCCGAAAAAAGAGGTCACGAGGACATCCGGACCGACAGGTGTACAGACAGATTCAGA</canonical_amplicon>
		<polymorphic_amplicon>CAAAGTATCAAAAATGACACACAAAAAAGGTCGACGAGAGTGCAAACGACGGCGACACAGTATCGGAAGTAGCCTTTTTTCACTTTTTTTTCTCGAAAAAAAGGAAAAAAWGAAGATAGAGAACAGAGATATGAAAATAGTGTGAAACAATAAATGGGAAAAATCGGCTGAAAAATCGACTAAAAAGGCCGAAAAAAGAGGTCACGAGGACATCCGGACCGACAGGTGTACAGACAGATTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21867</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>262514</contig_pos>
        <strand>+</strand>
        <context>GAAGTTCGGG[C/T]CAGAAAGCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGTGTACAGACAGATTCAGACCAACAGCCCAATATCGACGAAGTTCGGG</left_flank>
        <right_flank>CAGAAAGCACTGAAAAATTGGCTGGAATTCGGCTGAATTATAGATCCAAA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCCAGAAAAATCCGACAGAATAAAATTTCAAATTTCAGCCAAAAAGCGTAAAAATATGAAGCAGAATAGTTTGACAAAGGAGCAAACACTATGCCCAACAAACGTCCTTTTTCCCCTATTCGACACCATGGGTGATAAGGACAACATCGAGTTATCAATAATGTGCTCTGTTTCTCTGGAGTCTCTCGCTCAATATCTCTCTCGATTTTTCTTCTTCTTCTATCAAAGTATCAAAAATGACACACAAAAAAGGTCGACGAGAGTGCAAACGACGGCGACACAGTATCGGAAGTAGCCTTTTTTCACTTTTTTTTCTCGAAAAAAAGGAAAAAAAGAAGATAGAGAACAGAGATATGAAAATAGTGTGAAACAATAAATGGGAAAAATCGGCTGAAAAATCGACTAAAAAGGCCGAAAAAAGAGGTCACGAGGACATCCGGACCGACAGGTGTACAGACAGATTCAGACCAACAGCCCAATATCGACGAAGTTCGGGTCAGAAAGCACTGAAAAATTGGCTGGAATTCGGCTGAATTATAGATCCAAAAATCTTCGAAAACGCTCCAAAACGTTTCTTTCTCTAGTAAAATTGGTCAAAACCGATAGAAAATAAATTGAAGCTAATTTCAGAGCGTAGAGTAGACTAATTCTATGTGTCATCTATTCATTCTTTGACGGATTAGAGATAGAGAGAAATTGAGAGACGCAGAATTTTTCATCTTGGAAATTCGAAACCCAAAAAACATCGTCTGGAAATGCTGAAGTCTAGAATCTAGGAATCTACGAATCTAGGAAACTAGGAATCAAGGATCCAGGTGACCCGGAATCCAAGGGATCTGACATTCGGAAATCCAAGAACTCAGTGATCTGATAACCTAGGAGCCTGAATCTAAGAATCCTAAGAATCTAAGAATCCAGAATGTCAGCAATCTAGAATCCAGGAATCCAAGTCCCAGTACGTCAGAAATTCAGAAATCCAATCATTCAGTGATTTAAG</canonical>
            <polymorphic>ATTTCCAGAAAAATCCGACAGAATAAAATTTCAAATTTCAGCCAAAAAGCGTAAAAATATGAAGCAGAATAGTTTGACAAAGGAGCAAACACTATGCCCAACAAACGTCCTTTTTCCCCTATTCGACACCATGGGTGATAAGGACAACATCGAGTTATCAATAATGTGCTCTGTTTCTCTGGAGTCTCTCGCTCAATATCTCTCTCGATTTTTCTTCTTCTTCTATCAAAGTATCAAAAATGACACACAAAAAAGGTCGACGAGAGTGCAAACGACGGCGACACAGTATCGGAAGTAGCCTTTTTTCACTTTTTTTTCTCGAAAAAAAGGAAAAAAAGAAGATAGAGAACAGAGATATGAAAATAGTGTGAAACAATAAATGGGAAAAATCGGCTGAAAAATCGACTAAAAAGGCCGAAAAAAGAGGTCACGAGGACATCCGGACCGACAGGTGTACAGACAGATTCAGACCAACAGCCCAATATCGACGAAGTTCGGGYCAGAAAGCACTGAAAAATTGGCTGGAATTCGGCTGAATTATAGATCCAAAAATCTTCGAAAACGCTCCAAAACGTTTCTTTCTCTAGTAAAATTGGTCAAAACCGATAGAAAATAAATTGAAGCTAATTTCAGAGCGTAGAGTAGACTAATTCTATGTGTCATCTATTCATTCTTTGACGGATTAGAGATAGAGAGAAATTGAGAGACGCAGAATTTTTCATCTTGGAAATTCGAAACCCAAAAAACATCGTCTGGAAATGCTGAAGTCTAGAATCTAGGAATCTACGAATCTAGGAAACTAGGAATCAAGGATCCAGGTGACCCGGAATCCAAGGGATCTGACATTCGGAAATCCAAGAACTCAGTGATCTGATAACCTAGGAGCCTGAATCTAAGAATCCTAAGAATCTAAGAATCCAGAATGTCAGCAATCTAGAATCCAGGAATCCAAGTCCCAGTACGTCAGAAATTCAGAAATCCAATCATTCAGTGATTTAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>275 209 177 130 94 34 26 23 16 8 8</canonical_bands>
                <polymorphic_bands>275 209 177 164 94 26 23 16 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACAGGTGTACAGACAGATTCA</pcr_primer_p1>
		<pcr_primer_p2>CTCTCTATCTCTAATCCGTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACAGGTGTACAGACAGATTCAGACCAACAGCCCAATATCGACGAAGTTCGGGTCAGAAAGCACTGAAAAATTGGCTGGAATTCGGCTGAATTATAGATCCAAAAATCTTCGAAAACGCTCCAAAACGTTTCTTTCTCTAGTAAAATTGGTCAAAACCGATAGAAAATAAATTGAAGCTAATTTCAGAGCGTAGAGTAGACTAATTCTATGTGTCATCTATTCATTCTTTGACGGATTAGAGATAGAGAG</canonical_amplicon>
		<polymorphic_amplicon>GACAGGTGTACAGACAGATTCAGACCAACAGCCCAATATCGACGAAGTTCGGGYCAGAAAGCACTGAAAAATTGGCTGGAATTCGGCTGAATTATAGATCCAAAAATCTTCGAAAACGCTCCAAAACGTTTCTTTCTCTAGTAAAATTGGTCAAAACCGATAGAAAATAAATTGAAGCTAATTTCAGAGCGTAGAGTAGACTAATTCTATGTGTCATCTATTCATTCTTTGACGGATTAGAGATAGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21868</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>262582</contig_pos>
        <strand>+</strand>
        <context>GAAAACGCTC[C/T]AAAACGTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGCTGGAATTCGGCTGAATTATAGATCCAAAAATCTTCGAAAACGCTC</left_flank>
        <right_flank>AAAACGTTTCTTTCTCTAGTAAAATTGGTCAAAACCGATAGAAAATAAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGTTTGACAAAGGAGCAAACACTATGCCCAACAAACGTCCTTTTTCCCCTATTCGACACCATGGGTGATAAGGACAACATCGAGTTATCAATAATGTGCTCTGTTTCTCTGGAGTCTCTCGCTCAATATCTCTCTCGATTTTTCTTCTTCTTCTATCAAAGTATCAAAAATGACACACAAAAAAGGTCGACGAGAGTGCAAACGACGGCGACACAGTATCGGAAGTAGCCTTTTTTCACTTTTTTTTCTCGAAAAAAAGGAAAAAAAGAAGATAGAGAACAGAGATATGAAAATAGTGTGAAACAATAAATGGGAAAAATCGGCTGAAAAATCGACTAAAAAGGCCGAAAAAAGAGGTCACGAGGACATCCGGACCGACAGGTGTACAGACAGATTCAGACCAACAGCCCAATATCGACGAAGTTCGGGTCAGAAAGCACTGAAAAATTGGCTGGAATTCGGCTGAATTATAGATCCAAAAATCTTCGAAAACGCTCCAAAACGTTTCTTTCTCTAGTAAAATTGGTCAAAACCGATAGAAAATAAATTGAAGCTAATTTCAGAGCGTAGAGTAGACTAATTCTATGTGTCATCTATTCATTCTTTGACGGATTAGAGATAGAGAGAAATTGAGAGACGCAGAATTTTTCATCTTGGAAATTCGAAACCCAAAAAACATCGTCTGGAAATGCTGAAGTCTAGAATCTAGGAATCTACGAATCTAGGAAACTAGGAATCAAGGATCCAGGTGACCCGGAATCCAAGGGATCTGACATTCGGAAATCCAAGAACTCAGTGATCTGATAACCTAGGAGCCTGAATCTAAGAATCCTAAGAATCTAAGAATCCAGAATGTCAGCAATCTAGAATCCAGGAATCCAAGTCCCAGTACGTCAGAAATTCAGAAATCCAATCATTCAGTGATTTAAGAATCCAAGAGCCTAAAAATCTAGGAATCCAAAATGTCAGCAACCTGGAATCCAGGCAATCTAAGAATT</canonical>
            <polymorphic>ATAGTTTGACAAAGGAGCAAACACTATGCCCAACAAACGTCCTTTTTCCCCTATTCGACACCATGGGTGATAAGGACAACATCGAGTTATCAATAATGTGCTCTGTTTCTCTGGAGTCTCTCGCTCAATATCTCTCTCGATTTTTCTTCTTCTTCTATCAAAGTATCAAAAATGACACACAAAAAAGGTCGACGAGAGTGCAAACGACGGCGACACAGTATCGGAAGTAGCCTTTTTTCACTTTTTTTTCTCGAAAAAAAGGAAAAAAAGAAGATAGAGAACAGAGATATGAAAATAGTGTGAAACAATAAATGGGAAAAATCGGCTGAAAAATCGACTAAAAAGGCCGAAAAAAGAGGTCACGAGGACATCCGGACCGACAGGTGTACAGACAGATTCAGACCAACAGCCCAATATCGACGAAGTTCGGGTCAGAAAGCACTGAAAAATTGGCTGGAATTCGGCTGAATTATAGATCCAAAAATCTTCGAAAACGCTCYAAAACGTTTCTTTCTCTAGTAAAATTGGTCAAAACCGATAGAAAATAAATTGAAGCTAATTTCAGAGCGTAGAGTAGACTAATTCTATGTGTCATCTATTCATTCTTTGACGGATTAGAGATAGAGAGAAATTGAGAGACGCAGAATTTTTCATCTTGGAAATTCGAAACCCAAAAAACATCGTCTGGAAATGCTGAAGTCTAGAATCTAGGAATCTACGAATCTAGGAAACTAGGAATCAAGGATCCAGGTGACCCGGAATCCAAGGGATCTGACATTCGGAAATCCAAGAACTCAGTGATCTGATAACCTAGGAGCCTGAATCTAAGAATCCTAAGAATCTAAGAATCCAGAATGTCAGCAATCTAGAATCCAGGAATCCAAGTCCCAGTACGTCAGAAATTCAGAAATCCAATCATTCAGTGATTTAAGAATCCAAGAGCCTAAAAATCTAGGAATCCAAAATGTCAGCAACCTGGAATCCAGGCAATCTAAGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAGGTGTACAGACAGATTCA</pcr_primer_p1>
		<pcr_primer_p2>CTCTCTATCTCTAATCCGTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACAGGTGTACAGACAGATTCAGACCAACAGCCCAATATCGACGAAGTTCGGGTCAGAAAGCACTGAAAAATTGGCTGGAATTCGGCTGAATTATAGATCCAAAAATCTTCGAAAACGCTCCAAAACGTTTCTTTCTCTAGTAAAATTGGTCAAAACCGATAGAAAATAAATTGAAGCTAATTTCAGAGCGTAGAGTAGACTAATTCTATGTGTCATCTATTCATTCTTTGACGGATTAGAGATAGAGAG</canonical_amplicon>
		<polymorphic_amplicon>GACAGGTGTACAGACAGATTCAGACCAACAGCCCAATATCGACGAAGTTCGGGTCAGAAAGCACTGAAAAATTGGCTGGAATTCGGCTGAATTATAGATCCAAAAATCTTCGAAAACGCTCYAAAACGTTTCTTTCTCTAGTAAAATTGGTCAAAACCGATAGAAAATAAATTGAAGCTAATTTCAGAGCGTAGAGTAGACTAATTCTATGTGTCATCTATTCATTCTTTGACGGATTAGAGATAGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21869</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>263868</contig_pos>
        <strand>+</strand>
        <context>TCAGAGTTGA[A/G]CAGGGCGACG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTGTTACAGCAGACAACATAGTCAGTGTACAGAGAATGATCAGAGTTGA</left_flank>
        <right_flank>CAGGGCGACGACAGAATATGCTATGCCCTCTATTCGAAAATTGTAGAAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGGAAAAACCAAAAACTACGAAAATCCGAAGAAGATCGTTAAAAATGGCATTAAAACCTCTACGGGAACTCGAAATCTCCAAAATTGAAAATTTCAACCAGGACTATTTTAAGCCAAAAATCCCAAAAAATCATAAATCTCCGATGAACAACCGTCTCATAAAAAATCGCTCAAAAAAAAAATCGACAACTCCATGTCCCTTTAAAGTCATTAAAAACGAGACAAGAGAATATTCGAGAAACAAAAAAGACAAAACGAAACACATGTGCTTCTCATTGTTGTTTCTGAATGAGTCCATAGTCCTCTTCCCCCCTTATTTTCCTCTTCCATGGAACAGAGATATTGATCTGACTGGTTCAATCTCATGCTTTCTTTTTTTCTTATTTTCTCTCTTCGAGAGAGAAAAACAACAACAACAATGAGTGAGTGATGATGTCATTGTTGAAAATGTGTTACAGCAGACAACATAGTCAGTGTACAGAGAATGATCAGAGTTGAGCAGGGCGACGACAGAATATGCTATGCCCTCTATTCGAAAATTGTAGAAATTCGGAAAAGCCCCAAACCGTCAACTTTGAGCTCAAATATCTCGATTTCTGTGAAAGATACCAAAAAGTGGTCAACTGACAAAATGTTTATCATAATATCAAGCACATTTTATCAGTTAACCACTTTTTGATATCTGTTACAGTAACCGAGATAAATTGGCTCGAAATTGAAACTCCTAGTAGAGTGATTACGGTAGTTTTGCGTAGTAATTGTTCTCGGTGGTATCTTTAGATCCAGAATACGAGGCTCGTCGAGATCTATCTGATACCCAAGCTGACTCAAAAAGCCATTAAAAATTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAAAATTCTTTCATCGAGAAAAACGCATCGAAAAATACGCTGAAAGCCCTTAGGGACGAGGTT</canonical>
            <polymorphic>CAGGAAAAACCAAAAACTACGAAAATCCGAAGAAGATCGTTAAAAATGGCATTAAAACCTCTACGGGAACTCGAAATCTCCAAAATTGAAAATTTCAACCAGGACTATTTTAAGCCAAAAATCCCAAAAAATCATAAATCTCCGATGAACAACCGTCTCATAAAAAATCGCTCAAAAAAAAAATCGACAACTCCATGTCCCTTTAAAGTCATTAAAAACGAGACAAGAGAATATTCGAGAAACAAAAAAGACAAAACGAAACACATGTGCTTCTCATTGTTGTTTCTGAATGAGTCCATAGTCCTCTTCCCCCCTTATTTTCCTCTTCCATGGAACAGAGATATTGATCTGACTGGTTCAATCTCATGCTTTCTTTTTTTCTTATTTTCTCTCTTCGAGAGAGAAAAACAACAACAACAATGAGTGAGTGATGATGTCATTGTTGAAAATGTGTTACAGCAGACAACATAGTCAGTGTACAGAGAATGATCAGAGTTGARCAGGGCGACGACAGAATATGCTATGCCCTCTATTCGAAAATTGTAGAAATTCGGAAAAGCCCCAAACCGTCAACTTTGAGCTCAAATATCTCGATTTCTGTGAAAGATACCAAAAAGTGGTCAACTGACAAAATGTTTATCATAATATCAAGCACATTTTATCAGTTAACCACTTTTTGATATCTGTTACAGTAACCGAGATAAATTGGCTCGAAATTGAAACTCCTAGTAGAGTGATTACGGTAGTTTTGCGTAGTAATTGTTCTCGGTGGTATCTTTAGATCCAGAATACGAGGCTCGTCGAGATCTATCTGATACCCAAGCTGACTCAAAAAGCCATTAAAAATTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAAAATTCTTTCATCGAGAAAAACGCATCGAAAAATACGCTGAAAGCCCTTAGGGACGAGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATGTGTTACAGCAGACAA</pcr_primer_p1>
		<pcr_primer_p2>GCAAAACTACCGTAATCACTCT</pcr_primer_p2>
		<pcr_amplicon_size>308</pcr_amplicon_size>
		<canonical_amplicon>GAAAATGTGTTACAGCAGACAACATAGTCAGTGTACAGAGAATGATCAGAGTTGAGCAGGGCGACGACAGAATATGCTATGCCCTCTATTCGAAAATTGTAGAAATTCGGAAAAGCCCCAAACCGTCAACTTTGAGCTCAAATATCTCGATTTCTGTGAAAGATACCAAAAAGTGGTCAACTGACAAAATGTTTATCATAATATCAAGCACATTTTATCAGTTAACCACTTTTTGATATCTGTTACAGTAACCGAGATAAATTGGCTCGAAATTGAAACTCCTAGTAGAGTGATTACGGTAGTTTTGC</canonical_amplicon>
		<polymorphic_amplicon>GAAAATGTGTTACAGCAGACAACATAGTCAGTGTACAGAGAATGATCAGAGTTGARCAGGGCGACGACAGAATATGCTATGCCCTCTATTCGAAAATTGTAGAAATTCGGAAAAGCCCCAAACCGTCAACTTTGAGCTCAAATATCTCGATTTCTGTGAAAGATACCAAAAAGTGGTCAACTGACAAAATGTTTATCATAATATCAAGCACATTTTATCAGTTAACCACTTTTTGATATCTGTTACAGTAACCGAGATAAATTGGCTCGAAATTGAAACTCCTAGTAGAGTGATTACGGTAGTTTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21870</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>263771</contig_pos>
        <strand>+</strand>
        <context>CTTCGAGAGA[A/G]AAAAACAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGGTTCAATCTCATGCTTTCTTTTTTTCTTATTTTCTCTCTTCGAGAGA</left_flank>
        <right_flank>AAAAACAACAACAACAATGAGTGAGTGATGATGTCATTGTTGAAAATGTG</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAGGAATCCATGAGCTCCAGAACTCAGAATTCAGAAATCGAGAAATCCCGAAATCTGAAAAGTCAGTTATCCGAGAACCACAGAATTTGAAAATCCAGGAAAAACCAAAAACTACGAAAATCCGAAGAAGATCGTTAAAAATGGCATTAAAACCTCTACGGGAACTCGAAATCTCCAAAATTGAAAATTTCAACCAGGACTATTTTAAGCCAAAAATCCCAAAAAATCATAAATCTCCGATGAACAACCGTCTCATAAAAAATCGCTCAAAAAAAAAATCGACAACTCCATGTCCCTTTAAAGTCATTAAAAACGAGACAAGAGAATATTCGAGAAACAAAAAAGACAAAACGAAACACATGTGCTTCTCATTGTTGTTTCTGAATGAGTCCATAGTCCTCTTCCCCCCTTATTTTCCTCTTCCATGGAACAGAGATATTGATCTGACTGGTTCAATCTCATGCTTTCTTTTTTTCTTATTTTCTCTCTTCGAGAGAGAAAAACAACAACAACAATGAGTGAGTGATGATGTCATTGTTGAAAATGTGTTACAGCAGACAACATAGTCAGTGTACAGAGAATGATCAGAGTTGAGCAGGGCGACGACAGAATATGCTATGCCCTCTATTCGAAAATTGTAGAAATTCGGAAAAGCCCCAAACCGTCAACTTTGAGCTCAAATATCTCGATTTCTGTGAAAGATACCAAAAAGTGGTCAACTGACAAAATGTTTATCATAATATCAAGCACATTTTATCAGTTAACCACTTTTTGATATCTGTTACAGTAACCGAGATAAATTGGCTCGAAATTGAAACTCCTAGTAGAGTGATTACGGTAGTTTTGCGTAGTAATTGTTCTCGGTGGTATCTTTAGATCCAGAATACGAGGCTCGTCGAGATCTATCTGATACCCAAGCTGACTCAAAAAGCCATTAAAAATTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAATGCATGT</canonical>
            <polymorphic>ACCAGGAATCCATGAGCTCCAGAACTCAGAATTCAGAAATCGAGAAATCCCGAAATCTGAAAAGTCAGTTATCCGAGAACCACAGAATTTGAAAATCCAGGAAAAACCAAAAACTACGAAAATCCGAAGAAGATCGTTAAAAATGGCATTAAAACCTCTACGGGAACTCGAAATCTCCAAAATTGAAAATTTCAACCAGGACTATTTTAAGCCAAAAATCCCAAAAAATCATAAATCTCCGATGAACAACCGTCTCATAAAAAATCGCTCAAAAAAAAAATCGACAACTCCATGTCCCTTTAAAGTCATTAAAAACGAGACAAGAGAATATTCGAGAAACAAAAAAGACAAAACGAAACACATGTGCTTCTCATTGTTGTTTCTGAATGAGTCCATAGTCCTCTTCCCCCCTTATTTTCCTCTTCCATGGAACAGAGATATTGATCTGACTGGTTCAATCTCATGCTTTCTTTTTTTCTTATTTTCTCTCTTCGAGAGARAAAAACAACAACAACAATGAGTGAGTGATGATGTCATTGTTGAAAATGTGTTACAGCAGACAACATAGTCAGTGTACAGAGAATGATCAGAGTTGAGCAGGGCGACGACAGAATATGCTATGCCCTCTATTCGAAAATTGTAGAAATTCGGAAAAGCCCCAAACCGTCAACTTTGAGCTCAAATATCTCGATTTCTGTGAAAGATACCAAAAAGTGGTCAACTGACAAAATGTTTATCATAATATCAAGCACATTTTATCAGTTAACCACTTTTTGATATCTGTTACAGTAACCGAGATAAATTGGCTCGAAATTGAAACTCCTAGTAGAGTGATTACGGTAGTTTTGCGTAGTAATTGTTCTCGGTGGTATCTTTAGATCCAGAATACGAGGCTCGTCGAGATCTATCTGATACCCAAGCTGACTCAAAAAGCCATTAAAAATTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAATGCATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCATTAAAAACGAGACAAGAGA</pcr_primer_p1>
		<pcr_primer_p2>GTAACACATTTTCAACAATGACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCATTAAAAACGAGACAAGAGAATATTCGAGAAACAAAAAAGACAAAACGAAACACATGTGCTTCTCATTGTTGTTTCTGAATGAGTCCATAGTCCTCTTCCCCCCTTATTTTCCTCTTCCATGGAACAGAGATATTGATCTGACTGGTTCAATCTCATGCTTTCTTTTTTTCTTATTTTCTCTCTTCGAGAGAGAAAAACAACAACAACAATGAGTGAGTGATGATGTCATTGTTGAAAATGTGTTAC</canonical_amplicon>
		<polymorphic_amplicon>GTCATTAAAAACGAGACAAGAGAATATTCGAGAAACAAAAAAGACAAAACGAAACACATGTGCTTCTCATTGTTGTTTCTGAATGAGTCCATAGTCCTCTTCCCCCCTTATTTTCCTCTTCCATGGAACAGAGATATTGATCTGACTGGTTCAATCTCATGCTTTCTTTTTTTCTTATTTTCTCTCTTCGAGAGARAAAAACAACAACAACAATGAGTGAGTGATGATGTCATTGTTGAAAATGTGTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21871</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>263706</contig_pos>
        <strand></strand>
        <context>CCATGGAACA[G/C]AGATATTGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GAATGAGTCCATAGTCCTCTTCCCCCCTTATTTTCCTCTTCCATGGAACA</left_flank>
        <right_flank>AGATATTGATCTGACTGGTTCAATCTCATGCTTTCTTTTTTTCTTATTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCCAAGAACCCAAGAAACTGAAAATCCAGAATTTCAGTAATCTGAAATCAAGGTTACCCGGAAACCAGGAATCCATGAGCTCCAGAACTCAGAATTCAGAAATCGAGAAATCCCGAAATCTGAAAAGTCAGTTATCCGAGAACCACAGAATTTGAAAATCCAGGAAAAACCAAAAACTACGAAAATCCGAAGAAGATCGTTAAAAATGGCATTAAAACCTCTACGGGAACTCGAAATCTCCAAAATTGAAAATTTCAACCAGGACTATTTTAAGCCAAAAATCCCAAAAAATCATAAATCTCCGATGAACAACCGTCTCATAAAAAATCGCTCAAAAAAAAAATCGACAACTCCATGTCCCTTTAAAGTCATTAAAAACGAGACAAGAGAATATTCGAGAAACAAAAAAGACAAAACGAAACACATGTGCTTCTCATTGTTGTTTCTGAATGAGTCCATAGTCCTCTTCCCCCCTTATTTTCCTCTTCCATGGAACAGAGATATTGATCTGACTGGTTCAATCTCATGCTTTCTTTTTTTCTTATTTTCTCTCTTCGAGAGAGAAAAACAACAACAACAATGAGTGAGTGATGATGTCATTGTTGAAAATGTGTTACAGCAGACAACATAGTCAGTGTACAGAGAATGATCAGAGTTGAGCAGGGCGACGACAGAATATGCTATGCCCTCTATTCGAAAATTGTAGAAATTCGGAAAAGCCCCAAACCGTCAACTTTGAGCTCAAATATCTCGATTTCTGTGAAAGATACCAAAAAGTGGTCAACTGACAAAATGTTTATCATAATATCAAGCACATTTTATCAGTTAACCACTTTTTGATATCTGTTACAGTAACCGAGATAAATTGGCTCGAAATTGAAACTCCTAGTAGAGTGATTACGGTAGTTTTGCGTAGTAATTGTTCTCGGTGGTATCTTTAGATCCAGAATACGAGGCTCGTCGAGATCTATCTGATACCCAAGCTGACTCAAAAAGCC</canonical>
            <polymorphic>AACCCAAGAACCCAAGAAACTGAAAATCCAGAATTTCAGTAATCTGAAATCAAGGTTACCCGGAAACCAGGAATCCATGAGCTCCAGAACTCAGAATTCAGAAATCGAGAAATCCCGAAATCTGAAAAGTCAGTTATCCGAGAACCACAGAATTTGAAAATCCAGGAAAAACCAAAAACTACGAAAATCCGAAGAAGATCGTTAAAAATGGCATTAAAACCTCTACGGGAACTCGAAATCTCCAAAATTGAAAATTTCAACCAGGACTATTTTAAGCCAAAAATCCCAAAAAATCATAAATCTCCGATGAACAACCGTCTCATAAAAAATCGCTCAAAAAAAAAATCGACAACTCCATGTCCCTTTAAAGTCATTAAAAACGAGACAAGAGAATATTCGAGAAACAAAAAAGACAAAACGAAACACATGTGCTTCTCATTGTTGTTTCTGAATGAGTCCATAGTCCTCTTCCCCCCTTATTTTCCTCTTCCATGGAACASAGATATTGATCTGACTGGTTCAATCTCATGCTTTCTTTTTTTCTTATTTTCTCTCTTCGAGAGAGAAAAACAACAACAACAATGAGTGAGTGATGATGTCATTGTTGAAAATGTGTTACAGCAGACAACATAGTCAGTGTACAGAGAATGATCAGAGTTGAGCAGGGCGACGACAGAATATGCTATGCCCTCTATTCGAAAATTGTAGAAATTCGGAAAAGCCCCAAACCGTCAACTTTGAGCTCAAATATCTCGATTTCTGTGAAAGATACCAAAAAGTGGTCAACTGACAAAATGTTTATCATAATATCAAGCACATTTTATCAGTTAACCACTTTTTGATATCTGTTACAGTAACCGAGATAAATTGGCTCGAAATTGAAACTCCTAGTAGAGTGATTACGGTAGTTTTGCGTAGTAATTGTTCTCGGTGGTATCTTTAGATCCAGAATACGAGGCTCGTCGAGATCTATCTGATACCCAAGCTGACTCAAAAAGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCATTAAAAACGAGACAAGAGA</pcr_primer_p1>
		<pcr_primer_p2>GTAACACATTTTCAACAATGACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCATTAAAAACGAGACAAGAGAATATTCGAGAAACAAAAAAGACAAAACGAAACACATGTGCTTCTCATTGTTGTTTCTGAATGAGTCCATAGTCCTCTTCCCCCCTTATTTTCCTCTTCCATGGAACAGAGATATTGATCTGACTGGTTCAATCTCATGCTTTCTTTTTTTCTTATTTTCTCTCTTCGAGAGAGAAAAACAACAACAACAATGAGTGAGTGATGATGTCATTGTTGAAAATGTGTTAC</canonical_amplicon>
		<polymorphic_amplicon>GTCATTAAAAACGAGACAAGAGAATATTCGAGAAACAAAAAAGACAAAACGAAACACATGTGCTTCTCATTGTTGTTTCTGAATGAGTCCATAGTCCTCTTCCCCCCTTATTTTCCTCTTCCATGGAACASAGATATTGATCTGACTGGTTCAATCTCATGCTTTCTTTTTTTCTTATTTTCTCTCTTCGAGAGAGAAAAACAACAACAACAATGAGTGAGTGATGATGTCATTGTTGAAAATGTGTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21890</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>274304</contig_pos>
        <strand>+</strand>
        <context>TTGAAATTTT[G/T]CACGCAATGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCTATTGGCAAATAGGAGAAAAACTGTAAACAAAATGGCATTGAAATTTT</left_flank>
        <right_flank>CACGCAATGAGGAAAGTGGCGTACCATCTATAGAACTTTTTTAAATCTTA</right_flank>
        <qual_score>134</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATATCTTTCACAGGAAACGAGATAAATTAGCTCAAAATCGATAGCGTGAATTATTCCAGGATAATCGCGCCGTAAGCACCTTCGTCGGCAATTCAGGATTCAGTTTCTGGATTGGTGTCTTCTGTGTGAGCAATGATCCATCCACCTGTTATTTCGATGATGATACAGGCTCTGCGAGTGCCTATAACAATTTCGCCAGAGGCTTTCCGAATGTGGATTTGGGTGGATGTGTGTACTCGGCGGCGACTGGATCCCTAGCTGGGCAATGGATCAGTTCCGAATGTGAGAATGTTGAAATGGCATATGTCTGTGAGATTCCGACTACTAGATCAGGTAAACTTTAAACCCAAGAGTGCCTTTCAGAGAGAAAAAAAATTAGTTTTCGTAGTTGACGACTTGTGTACTAAGGGCATGTTCTTCTTATCACTAAGATTGGGAATCTGATAAGCTATTGGCAAATAGGAGAAAAACTGTAAACAAAATGGCATTGAAATTTTGCACGCAATGAGGAAAGTGGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGCAACCATTAGAAGCTTAGGATATGAGAGAGATTATTGTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAACAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTCTTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTTTTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTT</canonical>
            <polymorphic>TCATATCTTTCACAGGAAACGAGATAAATTAGCTCAAAATCGATAGCGTGAATTATTCCAGGATAATCGCGCCGTAAGCACCTTCGTCGGCAATTCAGGATTCAGTTTCTGGATTGGTGTCTTCTGTGTGAGCAATGATCCATCCACCTGTTATTTCGATGATGATACAGGCTCTGCGAGTGCCTATAACAATTTCGCCAGAGGCTTTCCGAATGTGGATTTGGGTGGATGTGTGTACTCGGCGGCGACTGGATCCCTAGCTGGGCAATGGATCAGTTCCGAATGTGAGAATGTTGAAATGGCATATGTCTGTGAGATTCCGACTACTAGATCAGGTAAACTTTAAACCCAAGAGTGCCTTTCAGAGAGAAAAAAAATTAGTTTTCGTAGTTGACGACTTGTGTACTAAGGGCATGTTCTTCTTATCACTAAGATTGGGAATCTGATAAGCTATTGGCAAATAGGAGAAAAACTGTAAACAAAATGGCATTGAAATTTTKCACGCAATGAGGAAAGTGGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGCAACCATTAGAAGCTTAGGATATGAGAGAGATTATTGTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAACAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTCTTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTTTTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 186 128 98 86</canonical_bands>
                <polymorphic_bands>688 128 98 86</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTGGGAATCTGATAAGCTATT</pcr_primer_p1>
		<pcr_primer_p2>GTGTCTGGAAATGTTATGGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>792</pcr_amplicon_size>
		<canonical_amplicon>GATTGGGAATCTGATAAGCTATTGGCAAATAGGAGAAAAACTGTAAACAAAATGGCATTGAAATTTTGCACGCAATGAGGAAAGTGGCGT</canonical_amplicon>
		<polymorphic_amplicon>GATTGGGAATCTGATAAGCTATTGGCAAATAGGAGAAAAACTGTAAACAAAATGGCATTGAAATTTTKCACGCAATGAGGAAAGTGGCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21891</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>274356</contig_pos>
        <strand>+</strand>
        <context>TAAATCTTAT[C/T]ACAGATCATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGCAATGAGGAAAGTGGCGTACCATCTATAGAACTTTTTTAAATCTTAT</left_flank>
        <right_flank>ACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATTCCAGGATAATCGCGCCGTAAGCACCTTCGTCGGCAATTCAGGATTCAGTTTCTGGATTGGTGTCTTCTGTGTGAGCAATGATCCATCCACCTGTTATTTCGATGATGATACAGGCTCTGCGAGTGCCTATAACAATTTCGCCAGAGGCTTTCCGAATGTGGATTTGGGTGGATGTGTGTACTCGGCGGCGACTGGATCCCTAGCTGGGCAATGGATCAGTTCCGAATGTGAGAATGTTGAAATGGCATATGTCTGTGAGATTCCGACTACTAGATCAGGTAAACTTTAAACCCAAGAGTGCCTTTCAGAGAGAAAAAAAATTAGTTTTCGTAGTTGACGACTTGTGTACTAAGGGCATGTTCTTCTTATCACTAAGATTGGGAATCTGATAAGCTATTGGCAAATAGGAGAAAAACTGTAAACAAAATGGCATTGAAATTTTGCACGCAATGAGGAAAGTGGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGCAACCATTAGAAGCTTAGGATATGAGAGAGATTATTGTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAACAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTCTTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTTTTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTTTGACGCACTTTTCGTAGATCAAAAAAAGCTACGCCTTTCAAATTTTCAGGTC</canonical>
            <polymorphic>TTATTCCAGGATAATCGCGCCGTAAGCACCTTCGTCGGCAATTCAGGATTCAGTTTCTGGATTGGTGTCTTCTGTGTGAGCAATGATCCATCCACCTGTTATTTCGATGATGATACAGGCTCTGCGAGTGCCTATAACAATTTCGCCAGAGGCTTTCCGAATGTGGATTTGGGTGGATGTGTGTACTCGGCGGCGACTGGATCCCTAGCTGGGCAATGGATCAGTTCCGAATGTGAGAATGTTGAAATGGCATATGTCTGTGAGATTCCGACTACTAGATCAGGTAAACTTTAAACCCAAGAGTGCCTTTCAGAGAGAAAAAAAATTAGTTTTCGTAGTTGACGACTTGTGTACTAAGGGCATGTTCTTCTTATCACTAAGATTGGGAATCTGATAAGCTATTGGCAAATAGGAGAAAAACTGTAAACAAAATGGCATTGAAATTTTGCACGCAATGAGGAAAGTGGCGTACCATCTATAGAACTTTTTTAAATCTTATYACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGCAACCATTAGAAGCTTAGGATATGAGAGAGATTATTGTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAACAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTCTTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTTTTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTTTGACGCACTTTTCGTAGATCAAAAAAAGCTACGCCTTTCAAATTTTCAGGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAAACAAAATGGCATTGAAA</pcr_primer_p1>
		<pcr_primer_p2>GTGTCTGGAAATGTTATGGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>750</pcr_amplicon_size>
		<canonical_amplicon>GTAAACAAAATGGCATTGAAATTTTGCACGCAATGAGGAAAGTGGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAA</canonical_amplicon>
		<polymorphic_amplicon>GTAAACAAAATGGCATTGAAATTTTGCACGCAATGAGGAAAGTGGCGTACCATCTATAGAACTTTTTTAAATCTTATYACAGATCATGCCAGTAAATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21892</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>274397</contig_pos>
        <strand></strand>
        <context>atatttgaaa[T/C]atgttccaac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAA</left_flank>
        <right_flank>ATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAGGATTCAGTTTCTGGATTGGTGTCTTCTGTGTGAGCAATGATCCATCCACCTGTTATTTCGATGATGATACAGGCTCTGCGAGTGCCTATAACAATTTCGCCAGAGGCTTTCCGAATGTGGATTTGGGTGGATGTGTGTACTCGGCGGCGACTGGATCCCTAGCTGGGCAATGGATCAGTTCCGAATGTGAGAATGTTGAAATGGCATATGTCTGTGAGATTCCGACTACTAGATCAGGTAAACTTTAAACCCAAGAGTGCCTTTCAGAGAGAAAAAAAATTAGTTTTCGTAGTTGACGACTTGTGTACTAAGGGCATGTTCTTCTTATCACTAAGATTGGGAATCTGATAAGCTATTGGCAAATAGGAGAAAAACTGTAAACAAAATGGCATTGAAATTTTGCACGCAATGAGGAAAGTGGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGCAACCATTAGAAGCTTAGGATATGAGAGAGATTATTGTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAACAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTCTTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTTTTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTTTGACGCACTTTTCGTAGATCAAAAAAAGCTACGCCTTTCAAATTTTCAGGTCCCACTTTTTTTAATTCGACAATATCCAATTTTTTCTATCTA</canonical>
            <polymorphic>TTCAGGATTCAGTTTCTGGATTGGTGTCTTCTGTGTGAGCAATGATCCATCCACCTGTTATTTCGATGATGATACAGGCTCTGCGAGTGCCTATAACAATTTCGCCAGAGGCTTTCCGAATGTGGATTTGGGTGGATGTGTGTACTCGGCGGCGACTGGATCCCTAGCTGGGCAATGGATCAGTTCCGAATGTGAGAATGTTGAAATGGCATATGTCTGTGAGATTCCGACTACTAGATCAGGTAAACTTTAAACCCAAGAGTGCCTTTCAGAGAGAAAAAAAATTAGTTTTCGTAGTTGACGACTTGTGTACTAAGGGCATGTTCTTCTTATCACTAAGATTGGGAATCTGATAAGCTATTGGCAAATAGGAGAAAAACTGTAAACAAAATGGCATTGAAATTTTGCACGCAATGAGGAAAGTGGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAAYATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGCAACCATTAGAAGCTTAGGATATGAGAGAGATTATTGTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAACAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTCTTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTTTTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTTTGACGCACTTTTCGTAGATCAAAAAAAGCTACGCCTTTCAAATTTTCAGGTCCCACTTTTTTTAATTCGACAATATCCAATTTTTTCTATCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCGTACCATCTATAGAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTGTCTGGAAATGTTATGGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>707</pcr_amplicon_size>
		<canonical_amplicon>GGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTT</canonical_amplicon>
		<polymorphic_amplicon>GGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAAYATGTTCCAACAAAAATCACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21893</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>274506</contig_pos>
        <strand></strand>
        <context>gtctctcacg[C/T]aaccattaga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACG</left_flank>
        <right_flank>AACCATTAGAAGCTTAGGATATGAGAGAGATTATTGTCGAATTAAAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTTTCCGAATGTGGATTTGGGTGGATGTGTGTACTCGGCGGCGACTGGATCCCTAGCTGGGCAATGGATCAGTTCCGAATGTGAGAATGTTGAAATGGCATATGTCTGTGAGATTCCGACTACTAGATCAGGTAAACTTTAAACCCAAGAGTGCCTTTCAGAGAGAAAAAAAATTAGTTTTCGTAGTTGACGACTTGTGTACTAAGGGCATGTTCTTCTTATCACTAAGATTGGGAATCTGATAAGCTATTGGCAAATAGGAGAAAAACTGTAAACAAAATGGCATTGAAATTTTGCACGCAATGAGGAAAGTGGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGCAACCATTAGAAGCTTAGGATATGAGAGAGATTATTGTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAACAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTCTTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTTTTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTTTGACGCACTTTTCGTAGATCAAAAAAAGCTACGCCTTTCAAATTTTCAGGTCCCACTTTTTTTAATTCGACAATATCCAATTTTTTCTATCTAATTTTCCGTTTTCTAGCTAATGTAAGAGTCGAGATACAGTCGTTTGAAGTTTAGAAAGCTAGAGACGCAGACAACGATACACTCTAAATGTCTGCGTCTCTCTTGCATT</canonical>
            <polymorphic>GGCTTTCCGAATGTGGATTTGGGTGGATGTGTGTACTCGGCGGCGACTGGATCCCTAGCTGGGCAATGGATCAGTTCCGAATGTGAGAATGTTGAAATGGCATATGTCTGTGAGATTCCGACTACTAGATCAGGTAAACTTTAAACCCAAGAGTGCCTTTCAGAGAGAAAAAAAATTAGTTTTCGTAGTTGACGACTTGTGTACTAAGGGCATGTTCTTCTTATCACTAAGATTGGGAATCTGATAAGCTATTGGCAAATAGGAGAAAAACTGTAAACAAAATGGCATTGAAATTTTGCACGCAATGAGGAAAGTGGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGYAACCATTAGAAGCTTAGGATATGAGAGAGATTATTGTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAACAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTCTTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTTTTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTTTGACGCACTTTTCGTAGATCAAAAAAAGCTACGCCTTTCAAATTTTCAGGTCCCACTTTTTTTAATTCGACAATATCCAATTTTTTCTATCTAATTTTCCGTTTTCTAGCTAATGTAAGAGTCGAGATACAGTCGTTTGAAGTTTAGAAAGCTAGAGACGCAGACAACGATACACTCTAAATGTCTGCGTCTCTCTTGCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCGTACCATCTATAGAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTGTCTGGAAATGTTATGGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>707</pcr_amplicon_size>
		<canonical_amplicon>GGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGCAACCATTAGAAGCTTAGGATAT</canonical_amplicon>
		<polymorphic_amplicon>GGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGYAACCATTAGAAGCTTAGGATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21894</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>276278</contig_pos>
        <strand></strand>
        <context>ATTTTTCTGA[C/A]AATTTTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ACCGTGTCGCAAAATCGATTTATTTCGCTGATTTTTCTCGATTTTTCTGA</left_flank>
        <right_flank>AATTTTTTTTCAGTTAAATTTTGATTTTCGGTTGTTTTTTTGCCCCATTT</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAAAAAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAAATTCTAGAAAATTAAGAAAATCAAAAAATCTCTAAATTTCTAAATTTCTAAAAATCTAAAACTTAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGGCCAATAAATTGAGAAGAACCGTGTCGCAAAATCGATTTATTTCGCTGATTTTTCTCGATTTTTCTGACAATTTTTTTTCAGTTAAATTTTGATTTTCGGTTGTTTTTTTGCCCCATTTTAGGTGTTTCTTTTTTTCTTAATTCAAAAATTTGAATTTCCAACCGATTTTGATGATTTTGGGCTCATTTTTACGCAACATTTTCCACTTTTCATTTCAGATTCTCGCCCCCACCCCCTCCGAAAAATGTCCGAATTCAACAAGGAAGTCTACAAATTTTGGGTGCAAAACCAATTGGCATTTTATGAGCAAAAATATCCGGATGCCGATCAAAAAAGTCTTCTGGACTTGATGGAAGGCATTTGGGAGGGCGTTTCGAAACGAGACAAAACCTTTTTTGAGCGGATGTATTTGGAGCAAAAAGGGGCGGAGCCTAACTGGAACGATGAGCAATGGGAGGAGTGGAATGCGGATAGGCAGGGACCGTTAGTACCAAGTCCTCAGATTTCTAACAATTCGATGACATCGGAATCGGATTTTTTGGATTTTGAAGAATTTGTGGAAAACCGG</canonical>
            <polymorphic>GTTTTTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAAAAAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAAATTCTAGAAAATTAAGAAAATCAAAAAATCTCTAAATTTCTAAATTTCTAAAAATCTAAAACTTAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGGCCAATAAATTGAGAAGAACCGTGTCGCAAAATCGATTTATTTCGCTGATTTTTCTCGATTTTTCTGAMAATTTTTTTTCAGTTAAATTTTGATTTTCGGTTGTTTTTTTGCCCCATTTTAGGTGTTTCTTTTTTTCTTAATTCAAAAATTTGAATTTCCAACCGATTTTGATGATTTTGGGCTCATTTTTACGCAACATTTTCCACTTTTCATTTCAGATTCTCGCCCCCACCCCCTCCGAAAAATGTCCGAATTCAACAAGGAAGTCTACAAATTTTGGGTGCAAAACCAATTGGCATTTTATGAGCAAAAATATCCGGATGCCGATCAAAAAAGTCTTCTGGACTTGATGGAAGGCATTTGGGAGGGCGTTTCGAAACGAGACAAAACCTTTTTTGAGCGGATGTATTTGGAGCAAAAAGGGGCGGAGCCTAACTGGAACGATGAGCAATGGGAGGAGTGGAATGCGGATAGGCAGGGACCGTTAGTACCAAGTCCTCAGATTTCTAACAATTCGATGACATCGGAATCGGATTTTTTGGATTTTGAAGAATTTGTGGAAAACCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAATTGAGAAGAACCGTGTC</pcr_primer_p1>
		<pcr_primer_p2>TGTTGAATTCGGACATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>ATAAATTGAGAAGAACCGTGTCGCAAAATCGATTTATTTCGCTGATTTTTCTCGATTTTTCTGACAATTTTTTTTCAGTTAAATTTTGATTTTCGGTTGTTTTTTTGCCCCATTTTAGGTGTTTCTTTTTTTCTTAATTCAAAAATTTGAATTTCCAACCGATTTTGATGATTTTGGGCTCATTTTTACGCAACATTTTCCACTTTTCATTTCAGATTCTCGCCCCCACCCCCTCCGAAAAATGTCCGAATTCAACA</canonical_amplicon>
		<polymorphic_amplicon>ATAAATTGAGAAGAACCGTGTCGCAAAATCGATTTATTTCGCTGATTTTTCTCGATTTTTCTGAMAATTTTTTTTCAGTTAAATTTTGATTTTCGGTTGTTTTTTTGCCCCATTTTAGGTGTTTCTTTTTTTCTTAATTCAAAAATTTGAATTTCCAACCGATTTTGATGATTTTGGGCTCATTTTTACGCAACATTTTCCACTTTTCATTTCAGATTCTCGCCCCCACCCCCTCCGAAAAATGTCCGAATTCAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21895</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>276211</contig_pos>
        <strand>+</strand>
        <context>AAAATGGCGG[A/C]CAATAAATTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGG</left_flank>
        <right_flank>CAATAAATTGAGAAGAACCGTGTCGCAAAATCGATTTATTTCGCTGATTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTCGAATATTTTGACTGTTATTTCCGTATCCACCACTAATCAAGGCTATCGTGGTTGGGCAGCGAAGTTTTTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAAAAAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAAATTCTAGAAAATTAAGAAAATCAAAAAATCTCTAAATTTCTAAATTTCTAAAAATCTAAAACTTAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGGCCAATAAATTGAGAAGAACCGTGTCGCAAAATCGATTTATTTCGCTGATTTTTCTCGATTTTTCTGACAATTTTTTTTCAGTTAAATTTTGATTTTCGGTTGTTTTTTTGCCCCATTTTAGGTGTTTCTTTTTTTCTTAATTCAAAAATTTGAATTTCCAACCGATTTTGATGATTTTGGGCTCATTTTTACGCAACATTTTCCACTTTTCATTTCAGATTCTCGCCCCCACCCCCTCCGAAAAATGTCCGAATTCAACAAGGAAGTCTACAAATTTTGGGTGCAAAACCAATTGGCATTTTATGAGCAAAAATATCCGGATGCCGATCAAAAAAGTCTTCTGGACTTGATGGAAGGCATTTGGGAGGGCGTTTCGAAACGAGACAAAACCTTTTTTGAGCGGATGTATTTGGAGCAAAAAGGGGCGGAGCCTAACTGGAACGATGAGCAATGGGAGGAGTGGAATGCGGATAGGCAGGGACCGTTAGTACCAAGTCCTCA</canonical>
            <polymorphic>GCTCGAATATTTTGACTGTTATTTCCGTATCCACCACTAATCAAGGCTATCGTGGTTGGGCAGCGAAGTTTTTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAAAAAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAAATTCTAGAAAATTAAGAAAATCAAAAAATCTCTAAATTTCTAAATTTCTAAAAATCTAAAACTTAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGGMCAATAAATTGAGAAGAACCGTGTCGCAAAATCGATTTATTTCGCTGATTTTTCTCGATTTTTCTGACAATTTTTTTTCAGTTAAATTTTGATTTTCGGTTGTTTTTTTGCCCCATTTTAGGTGTTTCTTTTTTTCTTAATTCAAAAATTTGAATTTCCAACCGATTTTGATGATTTTGGGCTCATTTTTACGCAACATTTTCCACTTTTCATTTCAGATTCTCGCCCCCACCCCCTCCGAAAAATGTCCGAATTCAACAAGGAAGTCTACAAATTTTGGGTGCAAAACCAATTGGCATTTTATGAGCAAAAATATCCGGATGCCGATCAAAAAAGTCTTCTGGACTTGATGGAAGGCATTTGGGAGGGCGTTTCGAAACGAGACAAAACCTTTTTTGAGCGGATGTATTTGGAGCAAAAAGGGGCGGAGCCTAACTGGAACGATGAGCAATGGGAGGAGTGGAATGCGGATAGGCAGGGACCGTTAGTACCAAGTCCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>501 436 63</canonical_bands>
                <polymorphic_bands>937 63</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>453 249 181 71 46</canonical_bands>
                <polymorphic_bands>634 249 71 46</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACAACTTCAAAAATTCCTAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGAAAAATCAGCGAAATAAATC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CAACAACTTCAAAAATTCCTAAATTTGAAAAAAAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAAATTCTAGAAAATTAAGAAAATCAAAAAATCTCTAAATTTCTAAATTTCTAAAAATCTAAAACTTAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGGCCAATAAATTGAGAAGAACCGTGTCGCAAAATCGATTTATTTCGCTGATTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>CAACAACTTCAAAAATTCCTAAATTTGAAAAAAAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAAATTCTAGAAAATTAAGAAAATCAAAAAATCTCTAAATTTCTAAATTTCTAAAAATCTAAAACTTAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGGMCAATAAATTGAGAAGAACCGTGTCGCAAAATCGATTTATTTCGCTGATTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21896</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>330460</contig_pos>
        <strand>+</strand>
        <context>ACAGAGATGA[C/G]CTTCGCAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTAGATGATAAGACATTAAGATTGGACATGCTGGAAACAGACAGAGATGA</left_flank>
        <right_flank>CTTCGCAAGAAACTTGAATCGGAAAGAGAACTAGCCGATCAGAGAGACTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGAGATCGAGCGAAGAAGGATCTGGAAAAAGAAGAAAAGCGGCGAAAAGATGATCGAGAAGCAGAAAGAAAACGATCCAGTGTCTATTCGCAACGAGAGCATGATCTGAAGAAGCTAGAAGATGATCTACGGAAGGCGTCAGAGAAGATTCGAAATCTGGAAGAGCAGAAGGATTCACAAGAGAAGCTAACGACATCTGTGCAGAATTCATTAAACGAGGCACATCGACAACACAAGAGTTTTATCGAAGAGTTGATGATTCGTCACAGAGAGGAGCTTAAAGAACGTGAAGATACTCATGAAGAAGTTTTGAAGATTAGAGAAAGCGAGGAGAAGTCAAGGTTCGAGAAGGATCGTCAGGAGCGGGAGAAGATGAGACGAGAGAGTGACGATCTTCGAGAGACGCAGAGAACACTGAAAGGCGATTTGGCAGCGATGAAGACAGATCTAGATGATAAGACATTAAGATTGGACATGCTGGAAACAGACAGAGATGAGCTTCGCAAGAAACTTGAATCGGAAAGAGAACTAGCCGATCAGAGAGACTTAGAGATATCCGAGTGTCGAACGAAGCTTGATGAAATGCAAGAGAAAGAGGCGGAGCTAAGAAGAGAGCTCGCTGAAAGTCAAGCGACGATCACAGCGATGGAAGGAGAGGGCAAGCTAAGCGAGGAGCAGTTTTTGGAGAATAAAAATGAGATAAATACGTTGAATGAGCAACTGGAGCAGGTGAACATTGAGCTAGATGCGAAAAATGAGGAGATTCGAAATCTGCAAGGATCCATTCAAGAGAAGGAAGTGCATATTCAAAATGTCCGCACCTCAACCCAACAGTTGTCTGCCACTTATGAGGAGGCAAATGGAGAGATTGAAATTCTGAAGCAAGAACTCTCTAGACTCCATGAGCAGCTCAACGAGAGAACCCGACAGATTTCAGAAGCCAATGAGAAGTTTGACGATGCTGCGAGGAAGAATGACGCGCTTCTAGAGGACTCTGC</canonical>
            <polymorphic>AGAGAGATCGAGCGAAGAAGGATCTGGAAAAAGAAGAAAAGCGGCGAAAAGATGATCGAGAAGCAGAAAGAAAACGATCCAGTGTCTATTCGCAACGAGAGCATGATCTGAAGAAGCTAGAAGATGATCTACGGAAGGCGTCAGAGAAGATTCGAAATCTGGAAGAGCAGAAGGATTCACAAGAGAAGCTAACGACATCTGTGCAGAATTCATTAAACGAGGCACATCGACAACACAAGAGTTTTATCGAAGAGTTGATGATTCGTCACAGAGAGGAGCTTAAAGAACGTGAAGATACTCATGAAGAAGTTTTGAAGATTAGAGAAAGCGAGGAGAAGTCAAGGTTCGAGAAGGATCGTCAGGAGCGGGAGAAGATGAGACGAGAGAGTGACGATCTTCGAGAGACGCAGAGAACACTGAAAGGCGATTTGGCAGCGATGAAGACAGATCTAGATGATAAGACATTAAGATTGGACATGCTGGAAACAGACAGAGATGASCTTCGCAAGAAACTTGAATCGGAAAGAGAACTAGCCGATCAGAGAGACTTAGAGATATCCGAGTGTCGAACGAAGCTTGATGAAATGCAAGAGAAAGAGGCGGAGCTAAGAAGAGAGCTCGCTGAAAGTCAAGCGACGATCACAGCGATGGAAGGAGAGGGCAAGCTAAGCGAGGAGCAGTTTTTGGAGAATAAAAATGAGATAAATACGTTGAATGAGCAACTGGAGCAGGTGAACATTGAGCTAGATGCGAAAAATGAGGAGATTCGAAATCTGCAAGGATCCATTCAAGAGAAGGAAGTGCATATTCAAAATGTCCGCACCTCAACCCAACAGTTGTCTGCCACTTATGAGGAGGCAAATGGAGAGATTGAAATTCTGAAGCAAGAACTCTCTAGACTCCATGAGCAGCTCAACGAGAGAACCCGACAGATTTCAGAAGCCAATGAGAAGTTTGACGATGCTGCGAGGAAGAATGACGCGCTTCTAGAGGACTCTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>222 168 116 90 89 78 75 72 48 30 12</canonical_bands>
                <polymorphic_bands>297 168 116 90 89 78 72 48 30 12</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>222 168 116 90 78 72 58 48 41 34 31 30 12</canonical_bands>
                <polymorphic_bands>256 168 116 90 78 72 58 48 41 31 30 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTAGAGAAAGCGAGGAGAAGT</pcr_primer_p1>
		<pcr_primer_p2>TCGGATATCTCTAAGTCTCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATTAGAGAAAGCGAGGAGAAGTCAAGGTTCGAGAAGGATCGTCAGGAGCGGGAGAAGATGAGACGAGAGAGTGACGATCTTCGAGAGACGCAGAGAACACTGAAAGGCGATTTGGCAGCGATGAAGACAGATCTAGATGATAAGACATTAAGATTGGACATGCTGGAAACAGACAGAGATGAGCTTCGCAAGAAACTTGAATCGGAAAGAGAACTAGCCGATCAGAGAGACTTAGAGATATCCGA</canonical_amplicon>
		<polymorphic_amplicon>ATTAGAGAAAGCGAGGAGAAGTCAAGGTTCGAGAAGGATCGTCAGGAGCGGGAGAAGATGAGACGAGAGAGTGACGATCTTCGAGAGACGCAGAGAACACTGAAAGGCGATTTGGCAGCGATGAAGACAGATCTAGATGATAAGACATTAAGATTGGACATGCTGGAAACAGACAGAGATGASCTTCGCAAGAAACTTGAATCGGAAAGAGAACTAGCCGATCAGAGAGACTTAGAGATATCCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21897</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>330478</contig_pos>
        <strand>+</strand>
        <context>AGAAACTTGA[A/C]TCGGAAAGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGATTGGACATGCTGGAAACAGACAGAGATGAGCTTCGCAAGAAACTTGA</left_flank>
        <right_flank>TCGGAAAGAGAACTAGCCGATCAGAGAGACTTAGAGATATCCGAGTGTCG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGATCTGGAAAAAGAAGAAAAGCGGCGAAAAGATGATCGAGAAGCAGAAAGAAAACGATCCAGTGTCTATTCGCAACGAGAGCATGATCTGAAGAAGCTAGAAGATGATCTACGGAAGGCGTCAGAGAAGATTCGAAATCTGGAAGAGCAGAAGGATTCACAAGAGAAGCTAACGACATCTGTGCAGAATTCATTAAACGAGGCACATCGACAACACAAGAGTTTTATCGAAGAGTTGATGATTCGTCACAGAGAGGAGCTTAAAGAACGTGAAGATACTCATGAAGAAGTTTTGAAGATTAGAGAAAGCGAGGAGAAGTCAAGGTTCGAGAAGGATCGTCAGGAGCGGGAGAAGATGAGACGAGAGAGTGACGATCTTCGAGAGACGCAGAGAACACTGAAAGGCGATTTGGCAGCGATGAAGACAGATCTAGATGATAAGACATTAAGATTGGACATGCTGGAAACAGACAGAGATGAGCTTCGCAAGAAACTTGAATCGGAAAGAGAACTAGCCGATCAGAGAGACTTAGAGATATCCGAGTGTCGAACGAAGCTTGATGAAATGCAAGAGAAAGAGGCGGAGCTAAGAAGAGAGCTCGCTGAAAGTCAAGCGACGATCACAGCGATGGAAGGAGAGGGCAAGCTAAGCGAGGAGCAGTTTTTGGAGAATAAAAATGAGATAAATACGTTGAATGAGCAACTGGAGCAGGTGAACATTGAGCTAGATGCGAAAAATGAGGAGATTCGAAATCTGCAAGGATCCATTCAAGAGAAGGAAGTGCATATTCAAAATGTCCGCACCTCAACCCAACAGTTGTCTGCCACTTATGAGGAGGCAAATGGAGAGATTGAAATTCTGAAGCAAGAACTCTCTAGACTCCATGAGCAGCTCAACGAGAGAACCCGACAGATTTCAGAAGCCAATGAGAAGTTTGACGATGCTGCGAGGAAGAATGACGCGCTTCTAGAGGACTCTGCGGGATGGCAAGAGAAGTA</canonical>
            <polymorphic>AGGATCTGGAAAAAGAAGAAAAGCGGCGAAAAGATGATCGAGAAGCAGAAAGAAAACGATCCAGTGTCTATTCGCAACGAGAGCATGATCTGAAGAAGCTAGAAGATGATCTACGGAAGGCGTCAGAGAAGATTCGAAATCTGGAAGAGCAGAAGGATTCACAAGAGAAGCTAACGACATCTGTGCAGAATTCATTAAACGAGGCACATCGACAACACAAGAGTTTTATCGAAGAGTTGATGATTCGTCACAGAGAGGAGCTTAAAGAACGTGAAGATACTCATGAAGAAGTTTTGAAGATTAGAGAAAGCGAGGAGAAGTCAAGGTTCGAGAAGGATCGTCAGGAGCGGGAGAAGATGAGACGAGAGAGTGACGATCTTCGAGAGACGCAGAGAACACTGAAAGGCGATTTGGCAGCGATGAAGACAGATCTAGATGATAAGACATTAAGATTGGACATGCTGGAAACAGACAGAGATGAGCTTCGCAAGAAACTTGAMTCGGAAAGAGAACTAGCCGATCAGAGAGACTTAGAGATATCCGAGTGTCGAACGAAGCTTGATGAAATGCAAGAGAAAGAGGCGGAGCTAAGAAGAGAGCTCGCTGAAAGTCAAGCGACGATCACAGCGATGGAAGGAGAGGGCAAGCTAAGCGAGGAGCAGTTTTTGGAGAATAAAAATGAGATAAATACGTTGAATGAGCAACTGGAGCAGGTGAACATTGAGCTAGATGCGAAAAATGAGGAGATTCGAAATCTGCAAGGATCCATTCAAGAGAAGGAAGTGCATATTCAAAATGTCCGCACCTCAACCCAACAGTTGTCTGCCACTTATGAGGAGGCAAATGGAGAGATTGAAATTCTGAAGCAAGAACTCTCTAGACTCCATGAGCAGCTCAACGAGAGAACCCGACAGATTTCAGAAGCCAATGAGAAGTTTGACGATGCTGCGAGGAAGAATGACGCGCTTCTAGAGGACTCTGCGGGATGGCAAGAGAAGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>256 254 248 131 86 25</canonical_bands>
                <polymorphic_bands>504 254 131 86 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGATAAGACATTAAGATTGGACA</pcr_primer_p1>
		<pcr_primer_p2>TCATTTTTATTCTCCAAAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATGATAAGACATTAAGATTGGACATGCTGGAAACAGACAGAGATGAGCTTCGCAAGAAACTTGAATCGGAAAGAGAACTAGCCGATCAGAGAGACTTAGAGATATCCGAGTGTCGAACGAAGCTTGATGAAATGCAAGAGAAAGAGGCGGAGCTAAGAAGAGAGCTCGCTGAAAGTCAAGCGACGATCACAGCGATGGAAGGAGAGGGCAAGCTAAGCGAGGAGCAGTTTTTGGAGAATAAAAATGA</canonical_amplicon>
		<polymorphic_amplicon>ATGATAAGACATTAAGATTGGACATGCTGGAAACAGACAGAGATGAGCTTCGCAAGAAACTTGAMTCGGAAAGAGAACTAGCCGATCAGAGAGACTTAGAGATATCCGAGTGTCGAACGAAGCTTGATGAAATGCAAGAGAAAGAGGCGGAGCTAAGAAGAGAGCTCGCTGAAAGTCAAGCGACGATCACAGCGATGGAAGGAGAGGGCAAGCTAAGCGAGGAGCAGTTTTTGGAGAATAAAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21898</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>330490</contig_pos>
        <strand>+</strand>
        <context>CGGAAAGAGA[A/G]CTAGCCGATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGGAAACAGACAGAGATGAGCTTCGCAAGAAACTTGAATCGGAAAGAGA</left_flank>
        <right_flank>CTAGCCGATCAGAGAGACTTAGAGATATCCGAGTGTCGAACGAAGCTTGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAGAAAAGCGGCGAAAAGATGATCGAGAAGCAGAAAGAAAACGATCCAGTGTCTATTCGCAACGAGAGCATGATCTGAAGAAGCTAGAAGATGATCTACGGAAGGCGTCAGAGAAGATTCGAAATCTGGAAGAGCAGAAGGATTCACAAGAGAAGCTAACGACATCTGTGCAGAATTCATTAAACGAGGCACATCGACAACACAAGAGTTTTATCGAAGAGTTGATGATTCGTCACAGAGAGGAGCTTAAAGAACGTGAAGATACTCATGAAGAAGTTTTGAAGATTAGAGAAAGCGAGGAGAAGTCAAGGTTCGAGAAGGATCGTCAGGAGCGGGAGAAGATGAGACGAGAGAGTGACGATCTTCGAGAGACGCAGAGAACACTGAAAGGCGATTTGGCAGCGATGAAGACAGATCTAGATGATAAGACATTAAGATTGGACATGCTGGAAACAGACAGAGATGAGCTTCGCAAGAAACTTGAATCGGAAAGAGAACTAGCCGATCAGAGAGACTTAGAGATATCCGAGTGTCGAACGAAGCTTGATGAAATGCAAGAGAAAGAGGCGGAGCTAAGAAGAGAGCTCGCTGAAAGTCAAGCGACGATCACAGCGATGGAAGGAGAGGGCAAGCTAAGCGAGGAGCAGTTTTTGGAGAATAAAAATGAGATAAATACGTTGAATGAGCAACTGGAGCAGGTGAACATTGAGCTAGATGCGAAAAATGAGGAGATTCGAAATCTGCAAGGATCCATTCAAGAGAAGGAAGTGCATATTCAAAATGTCCGCACCTCAACCCAACAGTTGTCTGCCACTTATGAGGAGGCAAATGGAGAGATTGAAATTCTGAAGCAAGAACTCTCTAGACTCCATGAGCAGCTCAACGAGAGAACCCGACAGATTTCAGAAGCCAATGAGAAGTTTGACGATGCTGCGAGGAAGAATGACGCGCTTCTAGAGGACTCTGCGGGATGGCAAGAGAAGTATGAGAGTCTTAA</canonical>
            <polymorphic>AAGAAGAAAAGCGGCGAAAAGATGATCGAGAAGCAGAAAGAAAACGATCCAGTGTCTATTCGCAACGAGAGCATGATCTGAAGAAGCTAGAAGATGATCTACGGAAGGCGTCAGAGAAGATTCGAAATCTGGAAGAGCAGAAGGATTCACAAGAGAAGCTAACGACATCTGTGCAGAATTCATTAAACGAGGCACATCGACAACACAAGAGTTTTATCGAAGAGTTGATGATTCGTCACAGAGAGGAGCTTAAAGAACGTGAAGATACTCATGAAGAAGTTTTGAAGATTAGAGAAAGCGAGGAGAAGTCAAGGTTCGAGAAGGATCGTCAGGAGCGGGAGAAGATGAGACGAGAGAGTGACGATCTTCGAGAGACGCAGAGAACACTGAAAGGCGATTTGGCAGCGATGAAGACAGATCTAGATGATAAGACATTAAGATTGGACATGCTGGAAACAGACAGAGATGAGCTTCGCAAGAAACTTGAATCGGAAAGAGARCTAGCCGATCAGAGAGACTTAGAGATATCCGAGTGTCGAACGAAGCTTGATGAAATGCAAGAGAAAGAGGCGGAGCTAAGAAGAGAGCTCGCTGAAAGTCAAGCGACGATCACAGCGATGGAAGGAGAGGGCAAGCTAAGCGAGGAGCAGTTTTTGGAGAATAAAAATGAGATAAATACGTTGAATGAGCAACTGGAGCAGGTGAACATTGAGCTAGATGCGAAAAATGAGGAGATTCGAAATCTGCAAGGATCCATTCAAGAGAAGGAAGTGCATATTCAAAATGTCCGCACCTCAACCCAACAGTTGTCTGCCACTTATGAGGAGGCAAATGGAGAGATTGAAATTCTGAAGCAAGAACTCTCTAGACTCCATGAGCAGCTCAACGAGAGAACCCGACAGATTTCAGAAGCCAATGAGAAGTTTGACGATGCTGCGAGGAAGAATGACGCGCTTCTAGAGGACTCTGCGGGATGGCAAGAGAAGTATGAGAGTCTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATAAGACATTAAGATTGGACA</pcr_primer_p1>
		<pcr_primer_p2>TCATTTTTATTCTCCAAAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATGATAAGACATTAAGATTGGACATGCTGGAAACAGACAGAGATGAGCTTCGCAAGAAACTTGAATCGGAAAGAGAACTAGCCGATCAGAGAGACTTAGAGATATCCGAGTGTCGAACGAAGCTTGATGAAATGCAAGAGAAAGAGGCGGAGCTAAGAAGAGAGCTCGCTGAAAGTCAAGCGACGATCACAGCGATGGAAGGAGAGGGCAAGCTAAGCGAGGAGCAGTTTTTGGAGAATAAAAATGA</canonical_amplicon>
		<polymorphic_amplicon>ATGATAAGACATTAAGATTGGACATGCTGGAAACAGACAGAGATGAGCTTCGCAAGAAACTTGAATCGGAAAGAGARCTAGCCGATCAGAGAGACTTAGAGATATCCGAGTGTCGAACGAAGCTTGATGAAATGCAAGAGAAAGAGGCGGAGCTAAGAAGAGAGCTCGCTGAAAGTCAAGCGACGATCACAGCGATGGAAGGAGAGGGCAAGCTAAGCGAGGAGCAGTTTTTGGAGAATAAAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21899</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>330580</contig_pos>
        <strand></strand>
        <context>GAAGAGAGCT[C/T]GCTGAAAGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGAAGCTTGATGAAATGCAAGAGAAAGAGGCGGAGCTAAGAAGAGAGCT</left_flank>
        <right_flank>GCTGAAAGTCAAGCGACGATCACAGCGATGGAAGGAGAGGGCAAGCTAAG</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGATGATCTACGGAAGGCGTCAGAGAAGATTCGAAATCTGGAAGAGCAGAAGGATTCACAAGAGAAGCTAACGACATCTGTGCAGAATTCATTAAACGAGGCACATCGACAACACAAGAGTTTTATCGAAGAGTTGATGATTCGTCACAGAGAGGAGCTTAAAGAACGTGAAGATACTCATGAAGAAGTTTTGAAGATTAGAGAAAGCGAGGAGAAGTCAAGGTTCGAGAAGGATCGTCAGGAGCGGGAGAAGATGAGACGAGAGAGTGACGATCTTCGAGAGACGCAGAGAACACTGAAAGGCGATTTGGCAGCGATGAAGACAGATCTAGATGATAAGACATTAAGATTGGACATGCTGGAAACAGACAGAGATGAGCTTCGCAAGAAACTTGAATCGGAAAGAGAACTAGCCGATCAGAGAGACTTAGAGATATCCGAGTGTCGAACGAAGCTTGATGAAATGCAAGAGAAAGAGGCGGAGCTAAGAAGAGAGCTCGCTGAAAGTCAAGCGACGATCACAGCGATGGAAGGAGAGGGCAAGCTAAGCGAGGAGCAGTTTTTGGAGAATAAAAATGAGATAAATACGTTGAATGAGCAACTGGAGCAGGTGAACATTGAGCTAGATGCGAAAAATGAGGAGATTCGAAATCTGCAAGGATCCATTCAAGAGAAGGAAGTGCATATTCAAAATGTCCGCACCTCAACCCAACAGTTGTCTGCCACTTATGAGGAGGCAAATGGAGAGATTGAAATTCTGAAGCAAGAACTCTCTAGACTCCATGAGCAGCTCAACGAGAGAACCCGACAGATTTCAGAAGCCAATGAGAAGTTTGACGATGCTGCGAGGAAGAATGACGCGCTTCTAGAGGACTCTGCGGGATGGCAAGAGAAGTATGAGAGTCTTAAGAAGGAATTGGAGGAGATTCAGAAGAGAGGAAAGGAGAAGGAGAAGGAGGAAGGAGAGTTGAGAGGACTCTTGGGTGATTTGAGAGCCAA</canonical>
            <polymorphic>AAGATGATCTACGGAAGGCGTCAGAGAAGATTCGAAATCTGGAAGAGCAGAAGGATTCACAAGAGAAGCTAACGACATCTGTGCAGAATTCATTAAACGAGGCACATCGACAACACAAGAGTTTTATCGAAGAGTTGATGATTCGTCACAGAGAGGAGCTTAAAGAACGTGAAGATACTCATGAAGAAGTTTTGAAGATTAGAGAAAGCGAGGAGAAGTCAAGGTTCGAGAAGGATCGTCAGGAGCGGGAGAAGATGAGACGAGAGAGTGACGATCTTCGAGAGACGCAGAGAACACTGAAAGGCGATTTGGCAGCGATGAAGACAGATCTAGATGATAAGACATTAAGATTGGACATGCTGGAAACAGACAGAGATGAGCTTCGCAAGAAACTTGAATCGGAAAGAGAACTAGCCGATCAGAGAGACTTAGAGATATCCGAGTGTCGAACGAAGCTTGATGAAATGCAAGAGAAAGAGGCGGAGCTAAGAAGAGAGCTYGCTGAAAGTCAAGCGACGATCACAGCGATGGAAGGAGAGGGCAAGCTAAGCGAGGAGCAGTTTTTGGAGAATAAAAATGAGATAAATACGTTGAATGAGCAACTGGAGCAGGTGAACATTGAGCTAGATGCGAAAAATGAGGAGATTCGAAATCTGCAAGGATCCATTCAAGAGAAGGAAGTGCATATTCAAAATGTCCGCACCTCAACCCAACAGTTGTCTGCCACTTATGAGGAGGCAAATGGAGAGATTGAAATTCTGAAGCAAGAACTCTCTAGACTCCATGAGCAGCTCAACGAGAGAACCCGACAGATTTCAGAAGCCAATGAGAAGTTTGACGATGCTGCGAGGAAGAATGACGCGCTTCTAGAGGACTCTGCGGGATGGCAAGAGAAGTATGAGAGTCTTAAGAAGGAATTGGAGGAGATTCAGAAGAGAGGAAAGGAGAAGGAGAAGGAGGAAGGAGAGTTGAGAGGACTCTTGGGTGATTTGAGAGCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGATAAGACATTAAGATTGGACA</pcr_primer_p1>
		<pcr_primer_p2>TCATTTTTATTCTCCAAAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATGATAAGACATTAAGATTGGACATGCTGGAAACAGACAGAGATGAGCTTCGCAAGAAACTTGAATCGGAAAGAGAACTAGCCGATCAGAGAGACTTAGAGATATCCGAGTGTCGAACGAAGCTTGATGAAATGCAAGAGAAAGAGGCGGAGCTAAGAAGAGAGCTCGCTGAAAGTCAAGCGACGATCACAGCGATGGAAGGAGAGGGCAAGCTAAGCGAGGAGCAGTTTTTGGAGAATAAAAATGA</canonical_amplicon>
		<polymorphic_amplicon>ATGATAAGACATTAAGATTGGACATGCTGGAAACAGACAGAGATGAGCTTCGCAAGAAACTTGAATCGGAAAGAGAACTAGCCGATCAGAGAGACTTAGAGATATCCGAGTGTCGAACGAAGCTTGATGAAATGCAAGAGAAAGAGGCGGAGCTAAGAAGAGAGCTYGCTGAAAGTCAAGCGACGATCACAGCGATGGAAGGAGAGGGCAAGCTAAGCGAGGAGCAGTTTTTGGAGAATAAAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21900</snp_id>
        <super_contig>c013301088.Contig1</super_contig>
        <contig_pos>8946</contig_pos>
        <strand>+</strand>
        <context>TACTAAAAAT[C/T]GTGAAGTCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCACAAGGTTACACCGGATTATACAAAGTGCAATTTTTTATACTAAAAAT</left_flank>
        <right_flank>GTGAAGTCAAAGGGTGCGGCACGCGTCGCTCAAGATACCAGGCACCAAAT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTGCGGTGGTTTCGAAAGTTTTAGTTATACATCCACGAATTGTTCTTCTTCCCTTTTGCAATAGCTATAAAACACGGAAAAGGGCTTCGGCCGCAGCAGCGTTGTCTTCCGTACGGGGTGGTGGAGAGGAACCGAGAAAAAGCACTTGAAGGAATAATTCATGGGTTTTATATAAGAAAATGGGAGAGAAATGGAGTGAAAAAAGAATGTTCGCCATTCCAAGCTTCTTCTTCTTCACGTTTTTTTCTCCACAATTGGTGTCATTTTAAAATGAGGAAAGATGGGTGGTGACGAATGAATTGCTCAGAAACAAACGGTTCACATAGTCAAGATCCGATGTTCCATGTCTACAGTATCCACCACTCTTCTTGATTCTTTTCGTGAACTATGTTCCCTTTGTATCTAACCGAAGCATTCAAATTCAAAATTCCGTGCGCTCCTGTTCCAGTCACAAGGTTACACCGGATTATACAAAGTGCAATTTTTTATACTAAAAATCGTGAAGTCAAAGGGTGCGGCACGCGTCGCTCAAGATACCAGGCACCAAATACAAAATGTTCGAAAAAACCTCAAAAGATCACAGATTGGAAAAGAGCAAAATCGCTGAAAAATCAGAAAACACTAATGCTCAACAAGATTGTCGCAATTTTCAAAAATTCGAAAAATCATACTTTCGAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGAATGTGCGTCCCCTTCCGATGTTTTTTGATTCTTCTCTTTTTTTGCGACAGACAGATTTGGCCACCTGGTGTGCCCATGGGGGTCTTTTCCCGATTTTTCCACAGAACTGTCATTTTGCCCTTCTAGGGGAAAATATATCTATACCCCATTCGCACGTTACGCCATACACCTCGTTCCGTCCCCGGTCCGTCCGGCC</canonical>
            <polymorphic>AGTGCGGTGGTTTCGAAAGTTTTAGTTATACATCCACGAATTGTTCTTCTTCCCTTTTGCAATAGCTATAAAACACGGAAAAGGGCTTCGGCCGCAGCAGCGTTGTCTTCCGTACGGGGTGGTGGAGAGGAACCGAGAAAAAGCACTTGAAGGAATAATTCATGGGTTTTATATAAGAAAATGGGAGAGAAATGGAGTGAAAAAAGAATGTTCGCCATTCCAAGCTTCTTCTTCTTCACGTTTTTTTCTCCACAATTGGTGTCATTTTAAAATGAGGAAAGATGGGTGGTGACGAATGAATTGCTCAGAAACAAACGGTTCACATAGTCAAGATCCGATGTTCCATGTCTACAGTATCCACCACTCTTCTTGATTCTTTTCGTGAACTATGTTCCCTTTGTATCTAACCGAAGCATTCAAATTCAAAATTCCGTGCGCTCCTGTTCCAGTCACAAGGTTACACCGGATTATACAAAGTGCAATTTTTTATACTAAAAATYGTGAAGTCAAAGGGTGCGGCACGCGTCGCTCAAGATACCAGGCACCAAATACAAAATGTTCGAAAAAACCTCAAAAGATCACAGATTGGAAAAGAGCAAAATCGCTGAAAAATCAGAAAACACTAATGCTCAACAAGATTGTCGCAATTTTCAAAAATTCGAAAAATCATACTTTCGAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGAATGTGCGTCCCCTTCCGATGTTTTTTGATTCTTCTCTTTTTTTGCGACAGACAGATTTGGCCACCTGGTGTGCCCATGGGGGTCTTTTCCCGATTTTTCCACAGAACTGTCATTTTGCCCTTCTAGGGGAAAATATATCTATACCCCATTCGCACGTTACGCCATACACCTCGTTCCGTCCCCGGTCCGTCCGGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>329 238 124 119 107 40 31 12</canonical_bands>
                <polymorphic_bands>329 238 150 124 107 40 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATGTTCCATGTCTACAGTATCC</pcr_primer_p1>
		<pcr_primer_p2>ATCTGTGATCTTTTGAGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATGTTCCATGTCTACAGTATCCACCACTCTTCTTGATTCTTTTCGTGAACTATGTTCCCTTTGTATCTAACCGAAGCATTCAAATTCAAAATTCCGTGCGCTCCTGTTCCAGTCACAAGGTTACACCGGATTATACAAAGTGCAATTTTTTATACTAAAAATCGTGAAGTCAAAGGGTGCGGCACGCGTCGCTCAAGATACCAGGCACCAAATACAAAATGTTCGAAAAAACCTCAAAAGATCACAGAT</canonical_amplicon>
		<polymorphic_amplicon>GATGTTCCATGTCTACAGTATCCACCACTCTTCTTGATTCTTTTCGTGAACTATGTTCCCTTTGTATCTAACCGAAGCATTCAAATTCAAAATTCCGTGCGCTCCTGTTCCAGTCACAAGGTTACACCGGATTATACAAAGTGCAATTTTTTATACTAAAAATYGTGAAGTCAAAGGGTGCGGCACGCGTCGCTCAAGATACCAGGCACCAAATACAAAATGTTCGAAAAAACCTCAAAAGATCACAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21901</snp_id>
        <super_contig>c013301088.Contig1</super_contig>
        <contig_pos>9087</contig_pos>
        <strand>+</strand>
        <context>CAACAAGATT[C/G]TCGCAATTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAGAGCAAAATCGCTGAAAAATCAGAAAACACTAATGCTCAACAAGATT</left_flank>
        <right_flank>TCGCAATTTTCAAAAATTCGAAAAATCATACTTTCGAAATTCGAAAGACC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCACTTGAAGGAATAATTCATGGGTTTTATATAAGAAAATGGGAGAGAAATGGAGTGAAAAAAGAATGTTCGCCATTCCAAGCTTCTTCTTCTTCACGTTTTTTTCTCCACAATTGGTGTCATTTTAAAATGAGGAAAGATGGGTGGTGACGAATGAATTGCTCAGAAACAAACGGTTCACATAGTCAAGATCCGATGTTCCATGTCTACAGTATCCACCACTCTTCTTGATTCTTTTCGTGAACTATGTTCCCTTTGTATCTAACCGAAGCATTCAAATTCAAAATTCCGTGCGCTCCTGTTCCAGTCACAAGGTTACACCGGATTATACAAAGTGCAATTTTTTATACTAAAAATCGTGAAGTCAAAGGGTGCGGCACGCGTCGCTCAAGATACCAGGCACCAAATACAAAATGTTCGAAAAAACCTCAAAAGATCACAGATTGGAAAAGAGCAAAATCGCTGAAAAATCAGAAAACACTAATGCTCAACAAGATTGTCGCAATTTTCAAAAATTCGAAAAATCATACTTTCGAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGAATGTGCGTCCCCTTCCGATGTTTTTTGATTCTTCTCTTTTTTTGCGACAGACAGATTTGGCCACCTGGTGTGCCCATGGGGGTCTTTTCCCGATTTTTCCACAGAACTGTCATTTTGCCCTTCTAGGGGAAAATATATCTATACCCCATTCGCACGTTACGCCATACACCTCGTTCCGTCCCCGGTCCGTCCGGCCTTTCACAGGTTGACAAGGCTAATGTTCTTTGTGTGCGGCCCCCGGAGAGAAACGGTGTCTGGCGCGAGGCACATGGAGGTCTTTTTGAAGGGTACTACACTTCAGTCGGTTCATCGCAGAAAAAGGAGAAACGCATCACAC</canonical>
            <polymorphic>AGCACTTGAAGGAATAATTCATGGGTTTTATATAAGAAAATGGGAGAGAAATGGAGTGAAAAAAGAATGTTCGCCATTCCAAGCTTCTTCTTCTTCACGTTTTTTTCTCCACAATTGGTGTCATTTTAAAATGAGGAAAGATGGGTGGTGACGAATGAATTGCTCAGAAACAAACGGTTCACATAGTCAAGATCCGATGTTCCATGTCTACAGTATCCACCACTCTTCTTGATTCTTTTCGTGAACTATGTTCCCTTTGTATCTAACCGAAGCATTCAAATTCAAAATTCCGTGCGCTCCTGTTCCAGTCACAAGGTTACACCGGATTATACAAAGTGCAATTTTTTATACTAAAAATCGTGAAGTCAAAGGGTGCGGCACGCGTCGCTCAAGATACCAGGCACCAAATACAAAATGTTCGAAAAAACCTCAAAAGATCACAGATTGGAAAAGAGCAAAATCGCTGAAAAATCAGAAAACACTAATGCTCAACAAGATTSTCGCAATTTTCAAAAATTCGAAAAATCATACTTTCGAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGAATGTGCGTCCCCTTCCGATGTTTTTTGATTCTTCTCTTTTTTTGCGACAGACAGATTTGGCCACCTGGTGTGCCCATGGGGGTCTTTTCCCGATTTTTCCACAGAACTGTCATTTTGCCCTTCTAGGGGAAAATATATCTATACCCCATTCGCACGTTACGCCATACACCTCGTTCCGTCCCCGGTCCGTCCGGCCTTTCACAGGTTGACAAGGCTAATGTTCTTTGTGTGCGGCCCCCGGAGAGAAACGGTGTCTGGCGCGAGGCACATGGAGGTCTTTTTGAAGGGTACTACACTTCAGTCGGTTCATCGCAGAAAAAGGAGAAACGCATCACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACCTCAAAAGATCACAGAT</pcr_primer_p1>
		<pcr_primer_p2>GACGCACATTCAAATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAACCTCAAAAGATCACAGATTGGAAAAGAGCAAAATCGCTGAAAAATCAGAAAACACTAATGCTCAACAAGATTGTCGCAATTTTCAAAAATTCGAAAAATCATACTTTCGAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGAATGTGCGTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACCTCAAAAGATCACAGATTGGAAAAGAGCAAAATCGCTGAAAAATCAGAAAACACTAATGCTCAACAAGATTSTCGCAATTTTCAAAAATTCGAAAAATCATACTTTCGAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGAATGTGCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21902</snp_id>
        <super_contig>c013301088.Contig1</super_contig>
        <contig_pos>9176</contig_pos>
        <strand>+</strand>
        <context>TGCATTTCAA[A/G]CRTTTYGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAA</left_flank>
        <right_flank>CATTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCTTCACGTTTTTTTCTCCACAATTGGTGTCATTTTAAAATGAGGAAAGATGGGTGGTGACGAATGAATTGCTCAGAAACAAACGGTTCACATAGTCAAGATCCGATGTTCCATGTCTACAGTATCCACCACTCTTCTTGATTCTTTTCGTGAACTATGTTCCCTTTGTATCTAACCGAAGCATTCAAATTCAAAATTCCGTGCGCTCCTGTTCCAGTCACAAGGTTACACCGGATTATACAAAGTGCAATTTTTTATACTAAAAATCGTGAAGTCAAAGGGTGCGGCACGCGTCGCTCAAGATACCAGGCACCAAATACAAAATGTTCGAAAAAACCTCAAAAGATCACAGATTGGAAAAGAGCAAAATCGCTGAAAAATCAGAAAACACTAATGCTCAACAAGATTGTCGCAATTTTCAAAAATTCGAAAAATCATACTTTCGAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGAATGTGCGTCCCCTTCCGATGTTTTTTGATTCTTCTCTTTTTTTGCGACAGACAGATTTGGCCACCTGGTGTGCCCATGGGGGTCTTTTCCCGATTTTTCCACAGAACTGTCATTTTGCCCTTCTAGGGGAAAATATATCTATACCCCATTCGCACGTTACGCCATACACCTCGTTCCGTCCCCGGTCCGTCCGGCCTTTCACAGGTTGACAAGGCTAATGTTCTTTGTGTGCGGCCCCCGGAGAGAAACGGTGTCTGGCGCGAGGCACATGGAGGTCTTTTTGAAGGGTACTACACTTCAGTCGGTTCATCGCAGAAAAAGGAGAAACGCATCACACACTAATTTGGTCGTTCGCTTTTTTGTTCTTCTCTTTTTCTCTGTTGTCCATTCATCTCTAGGTTTAATTGCTCGCCAAGGTAACAGATC</canonical>
            <polymorphic>CTTCTTCACGTTTTTTTCTCCACAATTGGTGTCATTTTAAAATGAGGAAAGATGGGTGGTGACGAATGAATTGCTCAGAAACAAACGGTTCACATAGTCAAGATCCGATGTTCCATGTCTACAGTATCCACCACTCTTCTTGATTCTTTTCGTGAACTATGTTCCCTTTGTATCTAACCGAAGCATTCAAATTCAAAATTCCGTGCGCTCCTGTTCCAGTCACAAGGTTACACCGGATTATACAAAGTGCAATTTTTTATACTAAAAATCGTGAAGTCAAAGGGTGCGGCACGCGTCGCTCAAGATACCAGGCACCAAATACAAAATGTTCGAAAAAACCTCAAAAGATCACAGATTGGAAAAGAGCAAAATCGCTGAAAAATCAGAAAACACTAATGCTCAACAAGATTGTCGCAATTTTCAAAAATTCGAAAAATCATACTTTCGAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAARCATTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGAATGTGCGTCCCCTTCCGATGTTTTTTGATTCTTCTCTTTTTTTGCGACAGACAGATTTGGCCACCTGGTGTGCCCATGGGGGTCTTTTCCCGATTTTTCCACAGAACTGTCATTTTGCCCTTCTAGGGGAAAATATATCTATACCCCATTCGCACGTTACGCCATACACCTCGTTCCGTCCCCGGTCCGTCCGGCCTTTCACAGGTTGACAAGGCTAATGTTCTTTGTGTGCGGCCCCCGGAGAGAAACGGTGTCTGGCGCGAGGCACATGGAGGTCTTTTTGAAGGGTACTACACTTCAGTCGGTTCATCGCAGAAAAAGGAGAAACGCATCACACACTAATTTGGTCGTTCGCTTTTTTGTTCTTCTCTTTTTCTCTGTTGTCCATTCATCTCTAGGTTTAATTGCTCGCCAAGGTAACAGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACCTCAAAAGATCACAGAT</pcr_primer_p1>
		<pcr_primer_p2>GACGCACATTCAAATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAACCTCAAAAGATCACAGATTGGAAAAGAGCAAAATCGCTGAAAAATCAGAAAACACTAATGCTCAACAAGATTGTCGCAATTTTCAAAAATTCGAAAAATCATACTTTCGAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGAATGTGCGTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACCTCAAAAGATCACAGATTGGAAAAGAGCAAAATCGCTGAAAAATCAGAAAACACTAATGCTCAACAAGATTGTCGCAATTTTCAAAAATTCGAAAAATCATACTTTCGAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAARCATTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGAATGTGCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21903</snp_id>
        <super_contig>c013301088.Contig1</super_contig>
        <contig_pos>9178</contig_pos>
        <strand>+</strand>
        <context>CATTTCAARC[A/G]TTTYGAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAAC</left_flank>
        <right_flank>TTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCACGTTTTTTTCTCCACAATTGGTGTCATTTTAAAATGAGGAAAGATGGGTGGTGACGAATGAATTGCTCAGAAACAAACGGTTCACATAGTCAAGATCCGATGTTCCATGTCTACAGTATCCACCACTCTTCTTGATTCTTTTCGTGAACTATGTTCCCTTTGTATCTAACCGAAGCATTCAAATTCAAAATTCCGTGCGCTCCTGTTCCAGTCACAAGGTTACACCGGATTATACAAAGTGCAATTTTTTATACTAAAAATCGTGAAGTCAAAGGGTGCGGCACGCGTCGCTCAAGATACCAGGCACCAAATACAAAATGTTCGAAAAAACCTCAAAAGATCACAGATTGGAAAAGAGCAAAATCGCTGAAAAATCAGAAAACACTAATGCTCAACAAGATTGTCGCAATTTTCAAAAATTCGAAAAATCATACTTTCGAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGAATGTGCGTCCCCTTCCGATGTTTTTTGATTCTTCTCTTTTTTTGCGACAGACAGATTTGGCCACCTGGTGTGCCCATGGGGGTCTTTTCCCGATTTTTCCACAGAACTGTCATTTTGCCCTTCTAGGGGAAAATATATCTATACCCCATTCGCACGTTACGCCATACACCTCGTTCCGTCCCCGGTCCGTCCGGCCTTTCACAGGTTGACAAGGCTAATGTTCTTTGTGTGCGGCCCCCGGAGAGAAACGGTGTCTGGCGCGAGGCACATGGAGGTCTTTTTGAAGGGTACTACACTTCAGTCGGTTCATCGCAGAAAAAGGAGAAACGCATCACACACTAATTTGGTCGTTCGCTTTTTTGTTCTTCTCTTTTTCTCTGTTGTCCATTCATCTCTAGGTTTAATTGCTCGCCAAGGTAACAGATCCC</canonical>
            <polymorphic>TCTTCACGTTTTTTTCTCCACAATTGGTGTCATTTTAAAATGAGGAAAGATGGGTGGTGACGAATGAATTGCTCAGAAACAAACGGTTCACATAGTCAAGATCCGATGTTCCATGTCTACAGTATCCACCACTCTTCTTGATTCTTTTCGTGAACTATGTTCCCTTTGTATCTAACCGAAGCATTCAAATTCAAAATTCCGTGCGCTCCTGTTCCAGTCACAAGGTTACACCGGATTATACAAAGTGCAATTTTTTATACTAAAAATCGTGAAGTCAAAGGGTGCGGCACGCGTCGCTCAAGATACCAGGCACCAAATACAAAATGTTCGAAAAAACCTCAAAAGATCACAGATTGGAAAAGAGCAAAATCGCTGAAAAATCAGAAAACACTAATGCTCAACAAGATTGTCGCAATTTTCAAAAATTCGAAAAATCATACTTTCGAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACRTTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGAATGTGCGTCCCCTTCCGATGTTTTTTGATTCTTCTCTTTTTTTGCGACAGACAGATTTGGCCACCTGGTGTGCCCATGGGGGTCTTTTCCCGATTTTTCCACAGAACTGTCATTTTGCCCTTCTAGGGGAAAATATATCTATACCCCATTCGCACGTTACGCCATACACCTCGTTCCGTCCCCGGTCCGTCCGGCCTTTCACAGGTTGACAAGGCTAATGTTCTTTGTGTGCGGCCCCCGGAGAGAAACGGTGTCTGGCGCGAGGCACATGGAGGTCTTTTTGAAGGGTACTACACTTCAGTCGGTTCATCGCAGAAAAAGGAGAAACGCATCACACACTAATTTGGTCGTTCGCTTTTTTGTTCTTCTCTTTTTCTCTGTTGTCCATTCATCTCTAGGTTTAATTGCTCGCCAAGGTAACAGATCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACCTCAAAAGATCACAGAT</pcr_primer_p1>
		<pcr_primer_p2>GACGCACATTCAAATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAACCTCAAAAGATCACAGATTGGAAAAGAGCAAAATCGCTGAAAAATCAGAAAACACTAATGCTCAACAAGATTGTCGCAATTTTCAAAAATTCGAAAAATCATACTTTCGAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGAATGTGCGTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACCTCAAAAGATCACAGATTGGAAAAGAGCAAAATCGCTGAAAAATCAGAAAACACTAATGCTCAACAAGATTGTCGCAATTTTCAAAAATTCGAAAAATCATACTTTCGAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACRTTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGAATGTGCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21904</snp_id>
        <super_contig>c013301088.Contig1</super_contig>
        <contig_pos>9182</contig_pos>
        <strand>+</strand>
        <context>TCAARCRTTT[C/T]GAAAATTGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTT</left_flank>
        <right_flank>GAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACGTTTTTTTCTCCACAATTGGTGTCATTTTAAAATGAGGAAAGATGGGTGGTGACGAATGAATTGCTCAGAAACAAACGGTTCACATAGTCAAGATCCGATGTTCCATGTCTACAGTATCCACCACTCTTCTTGATTCTTTTCGTGAACTATGTTCCCTTTGTATCTAACCGAAGCATTCAAATTCAAAATTCCGTGCGCTCCTGTTCCAGTCACAAGGTTACACCGGATTATACAAAGTGCAATTTTTTATACTAAAAATCGTGAAGTCAAAGGGTGCGGCACGCGTCGCTCAAGATACCAGGCACCAAATACAAAATGTTCGAAAAAACCTCAAAAGATCACAGATTGGAAAAGAGCAAAATCGCTGAAAAATCAGAAAACACTAATGCTCAACAAGATTGTCGCAATTTTCAAAAATTCGAAAAATCATACTTTCGAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGAATGTGCGTCCCCTTCCGATGTTTTTTGATTCTTCTCTTTTTTTGCGACAGACAGATTTGGCCACCTGGTGTGCCCATGGGGGTCTTTTCCCGATTTTTCCACAGAACTGTCATTTTGCCCTTCTAGGGGAAAATATATCTATACCCCATTCGCACGTTACGCCATACACCTCGTTCCGTCCCCGGTCCGTCCGGCCTTTCACAGGTTGACAAGGCTAATGTTCTTTGTGTGCGGCCCCCGGAGAGAAACGGTGTCTGGCGCGAGGCACATGGAGGTCTTTTTGAAGGGTACTACACTTCAGTCGGTTCATCGCAGAAAAAGGAGAAACGCATCACACACTAATTTGGTCGTTCGCTTTTTTGTTCTTCTCTTTTTCTCTGTTGTCCATTCATCTCTAGGTTTAATTGCTCGCCAAGGTAACAGATCCCCATT</canonical>
            <polymorphic>CACGTTTTTTTCTCCACAATTGGTGTCATTTTAAAATGAGGAAAGATGGGTGGTGACGAATGAATTGCTCAGAAACAAACGGTTCACATAGTCAAGATCCGATGTTCCATGTCTACAGTATCCACCACTCTTCTTGATTCTTTTCGTGAACTATGTTCCCTTTGTATCTAACCGAAGCATTCAAATTCAAAATTCCGTGCGCTCCTGTTCCAGTCACAAGGTTACACCGGATTATACAAAGTGCAATTTTTTATACTAAAAATCGTGAAGTCAAAGGGTGCGGCACGCGTCGCTCAAGATACCAGGCACCAAATACAAAATGTTCGAAAAAACCTCAAAAGATCACAGATTGGAAAAGAGCAAAATCGCTGAAAAATCAGAAAACACTAATGCTCAACAAGATTGTCGCAATTTTCAAAAATTCGAAAAATCATACTTTCGAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTTYGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGAATGTGCGTCCCCTTCCGATGTTTTTTGATTCTTCTCTTTTTTTGCGACAGACAGATTTGGCCACCTGGTGTGCCCATGGGGGTCTTTTCCCGATTTTTCCACAGAACTGTCATTTTGCCCTTCTAGGGGAAAATATATCTATACCCCATTCGCACGTTACGCCATACACCTCGTTCCGTCCCCGGTCCGTCCGGCCTTTCACAGGTTGACAAGGCTAATGTTCTTTGTGTGCGGCCCCCGGAGAGAAACGGTGTCTGGCGCGAGGCACATGGAGGTCTTTTTGAAGGGTACTACACTTCAGTCGGTTCATCGCAGAAAAAGGAGAAACGCATCACACACTAATTTGGTCGTTCGCTTTTTTGTTCTTCTCTTTTTCTCTGTTGTCCATTCATCTCTAGGTTTAATTGCTCGCCAAGGTAACAGATCCCCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACCTCAAAAGATCACAGAT</pcr_primer_p1>
		<pcr_primer_p2>GACGCACATTCAAATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAACCTCAAAAGATCACAGATTGGAAAAGAGCAAAATCGCTGAAAAATCAGAAAACACTAATGCTCAACAAGATTGTCGCAATTTTCAAAAATTCGAAAAATCATACTTTCGAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGAATGTGCGTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACCTCAAAAGATCACAGATTGGAAAAGAGCAAAATCGCTGAAAAATCAGAAAACACTAATGCTCAACAAGATTGTCGCAATTTTCAAAAATTCGAAAAATCATACTTTCGAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTTYGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGAATGTGCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21905</snp_id>
        <super_contig>c013301088.Contig1</super_contig>
        <contig_pos>9200</contig_pos>
        <strand>+</strand>
        <context>GGAAACCCAT[C/T]TGTCTCCCAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGTGCGTGTCGGAGTGCATTTCAAACATTTTGAAAATTGGAAACCCAT</left_flank>
        <right_flank>TGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGGTGTCATTTTAAAATGAGGAAAGATGGGTGGTGACGAATGAATTGCTCAGAAACAAACGGTTCACATAGTCAAGATCCGATGTTCCATGTCTACAGTATCCACCACTCTTCTTGATTCTTTTCGTGAACTATGTTCCCTTTGTATCTAACCGAAGCATTCAAATTCAAAATTCCGTGCGCTCCTGTTCCAGTCACAAGGTTACACCGGATTATACAAAGTGCAATTTTTTATACTAAAAATCGTGAAGTCAAAGGGTGCGGCACGCGTCGCTCAAGATACCAGGCACCAAATACAAAATGTTCGAAAAAACCTCAAAAGATCACAGATTGGAAAAGAGCAAAATCGCTGAAAAATCAGAAAACACTAATGCTCAACAAGATTGTCGCAATTTTCAAAAATTCGAAAAATCATACTTTCGAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGAATGTGCGTCCCCTTCCGATGTTTTTTGATTCTTCTCTTTTTTTGCGACAGACAGATTTGGCCACCTGGTGTGCCCATGGGGGTCTTTTCCCGATTTTTCCACAGAACTGTCATTTTGCCCTTCTAGGGGAAAATATATCTATACCCCATTCGCACGTTACGCCATACACCTCGTTCCGTCCCCGGTCCGTCCGGCCTTTCACAGGTTGACAAGGCTAATGTTCTTTGTGTGCGGCCCCCGGAGAGAAACGGTGTCTGGCGCGAGGCACATGGAGGTCTTTTTGAAGGGTACTACACTTCAGTCGGTTCATCGCAGAAAAAGGAGAAACGCATCACACACTAATTTGGTCGTTCGCTTTTTTGTTCTTCTCTTTTTCTCTGTTGTCCATTCATCTCTAGGTTTAATTGCTCGCCAAGGTAACAGATCCCCATTATTTTTTTTGAAAGCATC</canonical>
            <polymorphic>ATTGGTGTCATTTTAAAATGAGGAAAGATGGGTGGTGACGAATGAATTGCTCAGAAACAAACGGTTCACATAGTCAAGATCCGATGTTCCATGTCTACAGTATCCACCACTCTTCTTGATTCTTTTCGTGAACTATGTTCCCTTTGTATCTAACCGAAGCATTCAAATTCAAAATTCCGTGCGCTCCTGTTCCAGTCACAAGGTTACACCGGATTATACAAAGTGCAATTTTTTATACTAAAAATCGTGAAGTCAAAGGGTGCGGCACGCGTCGCTCAAGATACCAGGCACCAAATACAAAATGTTCGAAAAAACCTCAAAAGATCACAGATTGGAAAAGAGCAAAATCGCTGAAAAATCAGAAAACACTAATGCTCAACAAGATTGTCGCAATTTTCAAAAATTCGAAAAATCATACTTTCGAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTTTGAAAATTGGAAACCCATYTGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGAATGTGCGTCCCCTTCCGATGTTTTTTGATTCTTCTCTTTTTTTGCGACAGACAGATTTGGCCACCTGGTGTGCCCATGGGGGTCTTTTCCCGATTTTTCCACAGAACTGTCATTTTGCCCTTCTAGGGGAAAATATATCTATACCCCATTCGCACGTTACGCCATACACCTCGTTCCGTCCCCGGTCCGTCCGGCCTTTCACAGGTTGACAAGGCTAATGTTCTTTGTGTGCGGCCCCCGGAGAGAAACGGTGTCTGGCGCGAGGCACATGGAGGTCTTTTTGAAGGGTACTACACTTCAGTCGGTTCATCGCAGAAAAAGGAGAAACGCATCACACACTAATTTGGTCGTTCGCTTTTTTGTTCTTCTCTTTTTCTCTGTTGTCCATTCATCTCTAGGTTTAATTGCTCGCCAAGGTAACAGATCCCCATTATTTTTTTTGAAAGCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACCTCAAAAGATCACAGAT</pcr_primer_p1>
		<pcr_primer_p2>GACGCACATTCAAATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAACCTCAAAAGATCACAGATTGGAAAAGAGCAAAATCGCTGAAAAATCAGAAAACACTAATGCTCAACAAGATTGTCGCAATTTTCAAAAATTCGAAAAATCATACTTTCGAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGAATGTGCGTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACCTCAAAAGATCACAGATTGGAAAAGAGCAAAATCGCTGAAAAATCAGAAAACACTAATGCTCAACAAGATTGTCGCAATTTTCAAAAATTCGAAAAATCATACTTTCGAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTTTGAAAATTGGAAACCCATYTGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGAATGTGCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21906</snp_id>
        <super_contig>c013301088.Contig1</super_contig>
        <contig_pos>9229</contig_pos>
        <strand>+</strand>
        <context>AAAATTTGGG[C/T]GCYCACCCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGG</left_flank>
        <right_flank>GCCCACCCCGGAAAAATTTGAATGTGCGTCCCCTTCCGATGTTTTTTGAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGTGGTGACGAATGAATTGCTCAGAAACAAACGGTTCACATAGTCAAGATCCGATGTTCCATGTCTACAGTATCCACCACTCTTCTTGATTCTTTTCGTGAACTATGTTCCCTTTGTATCTAACCGAAGCATTCAAATTCAAAATTCCGTGCGCTCCTGTTCCAGTCACAAGGTTACACCGGATTATACAAAGTGCAATTTTTTATACTAAAAATCGTGAAGTCAAAGGGTGCGGCACGCGTCGCTCAAGATACCAGGCACCAAATACAAAATGTTCGAAAAAACCTCAAAAGATCACAGATTGGAAAAGAGCAAAATCGCTGAAAAATCAGAAAACACTAATGCTCAACAAGATTGTCGCAATTTTCAAAAATTCGAAAAATCATACTTTCGAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGAATGTGCGTCCCCTTCCGATGTTTTTTGATTCTTCTCTTTTTTTGCGACAGACAGATTTGGCCACCTGGTGTGCCCATGGGGGTCTTTTCCCGATTTTTCCACAGAACTGTCATTTTGCCCTTCTAGGGGAAAATATATCTATACCCCATTCGCACGTTACGCCATACACCTCGTTCCGTCCCCGGTCCGTCCGGCCTTTCACAGGTTGACAAGGCTAATGTTCTTTGTGTGCGGCCCCCGGAGAGAAACGGTGTCTGGCGCGAGGCACATGGAGGTCTTTTTGAAGGGTACTACACTTCAGTCGGTTCATCGCAGAAAAAGGAGAAACGCATCACACACTAATTTGGTCGTTCGCTTTTTTGTTCTTCTCTTTTTCTCTGTTGTCCATTCATCTCTAGGTTTAATTGCTCGCCAAGGTAACAGATCCCCATTATTTTTTTTGAAAGCATCTTCGGTCGTCTGGCCTTTAAAATGGACTA</canonical>
            <polymorphic>GGGTGGTGACGAATGAATTGCTCAGAAACAAACGGTTCACATAGTCAAGATCCGATGTTCCATGTCTACAGTATCCACCACTCTTCTTGATTCTTTTCGTGAACTATGTTCCCTTTGTATCTAACCGAAGCATTCAAATTCAAAATTCCGTGCGCTCCTGTTCCAGTCACAAGGTTACACCGGATTATACAAAGTGCAATTTTTTATACTAAAAATCGTGAAGTCAAAGGGTGCGGCACGCGTCGCTCAAGATACCAGGCACCAAATACAAAATGTTCGAAAAAACCTCAAAAGATCACAGATTGGAAAAGAGCAAAATCGCTGAAAAATCAGAAAACACTAATGCTCAACAAGATTGTCGCAATTTTCAAAAATTCGAAAAATCATACTTTCGAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGYGCCCACCCCGGAAAAATTTGAATGTGCGTCCCCTTCCGATGTTTTTTGATTCTTCTCTTTTTTTGCGACAGACAGATTTGGCCACCTGGTGTGCCCATGGGGGTCTTTTCCCGATTTTTCCACAGAACTGTCATTTTGCCCTTCTAGGGGAAAATATATCTATACCCCATTCGCACGTTACGCCATACACCTCGTTCCGTCCCCGGTCCGTCCGGCCTTTCACAGGTTGACAAGGCTAATGTTCTTTGTGTGCGGCCCCCGGAGAGAAACGGTGTCTGGCGCGAGGCACATGGAGGTCTTTTTGAAGGGTACTACACTTCAGTCGGTTCATCGCAGAAAAAGGAGAAACGCATCACACACTAATTTGGTCGTTCGCTTTTTTGTTCTTCTCTTTTTCTCTGTTGTCCATTCATCTCTAGGTTTAATTGCTCGCCAAGGTAACAGATCCCCATTATTTTTTTTGAAAGCATCTTCGGTCGTCTGGCCTTTAAAATGGACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>502 258 240</canonical_bands>
                <polymorphic_bands>742 258</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>503 405 92</canonical_bands>
                <polymorphic_bands>595 405</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>503 405 92</canonical_bands>
                <polymorphic_bands>595 405</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>141 80 58 53 51 42 41 39 38 37 33 31 29 28 28 24 23 22 21 21 19 17 17 14 14 13 10 8 7 7 5 5 4 4 3 3 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>141 80 58 53 51 42 41 39 38 37 33 31 29 28 28 24 23 23 22 21 21 17 17 14 14 13 10 8 7 7 5 5 4 3 3 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATTCGAAAGACCATCAA</pcr_primer_p1>
		<pcr_primer_p2>AATGACAGTTCTGTGGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGAATGTGCGTCCCCTTCCGATGTTTTTTGATTCTTCTCTTTTTTTGCGACAGACAGATTTGGCCACCTGGTGTGCCCATGGGGGTCTTTTCCCGATTTTTCCACAGAACTGTCATT</canonical_amplicon>
		<polymorphic_amplicon>GAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGYGCCCACCCCGGAAAAATTTGAATGTGCGTCCCCTTCCGATGTTTTTTGATTCTTCTCTTTTTTTGCGACAGACAGATTTGGCCACCTGGTGTGCCCATGGGGGTCTTTTCCCGATTTTTCCACAGAACTGTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21907</snp_id>
        <super_contig>c013301088.Contig1</super_contig>
        <contig_pos>9232</contig_pos>
        <strand>+</strand>
        <context>ATTTGGGYGC[C/T]CACCCCGGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGC</left_flank>
        <right_flank>CACCCCGGAAAAATTTGAATGTGCGTCCCCTTCCGATGTTTTTTGATTCT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTGACGAATGAATTGCTCAGAAACAAACGGTTCACATAGTCAAGATCCGATGTTCCATGTCTACAGTATCCACCACTCTTCTTGATTCTTTTCGTGAACTATGTTCCCTTTGTATCTAACCGAAGCATTCAAATTCAAAATTCCGTGCGCTCCTGTTCCAGTCACAAGGTTACACCGGATTATACAAAGTGCAATTTTTTATACTAAAAATCGTGAAGTCAAAGGGTGCGGCACGCGTCGCTCAAGATACCAGGCACCAAATACAAAATGTTCGAAAAAACCTCAAAAGATCACAGATTGGAAAAGAGCAAAATCGCTGAAAAATCAGAAAACACTAATGCTCAACAAGATTGTCGCAATTTTCAAAAATTCGAAAAATCATACTTTCGAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGAATGTGCGTCCCCTTCCGATGTTTTTTGATTCTTCTCTTTTTTTGCGACAGACAGATTTGGCCACCTGGTGTGCCCATGGGGGTCTTTTCCCGATTTTTCCACAGAACTGTCATTTTGCCCTTCTAGGGGAAAATATATCTATACCCCATTCGCACGTTACGCCATACACCTCGTTCCGTCCCCGGTCCGTCCGGCCTTTCACAGGTTGACAAGGCTAATGTTCTTTGTGTGCGGCCCCCGGAGAGAAACGGTGTCTGGCGCGAGGCACATGGAGGTCTTTTTGAAGGGTACTACACTTCAGTCGGTTCATCGCAGAAAAAGGAGAAACGCATCACACACTAATTTGGTCGTTCGCTTTTTTGTTCTTCTCTTTTTCTCTGTTGTCCATTCATCTCTAGGTTTAATTGCTCGCCAAGGTAACAGATCCCCATTATTTTTTTTGAAAGCATCTTCGGTCGTCTGGCCTTTAAAATGGACTAAGG</canonical>
            <polymorphic>TGGTGACGAATGAATTGCTCAGAAACAAACGGTTCACATAGTCAAGATCCGATGTTCCATGTCTACAGTATCCACCACTCTTCTTGATTCTTTTCGTGAACTATGTTCCCTTTGTATCTAACCGAAGCATTCAAATTCAAAATTCCGTGCGCTCCTGTTCCAGTCACAAGGTTACACCGGATTATACAAAGTGCAATTTTTTATACTAAAAATCGTGAAGTCAAAGGGTGCGGCACGCGTCGCTCAAGATACCAGGCACCAAATACAAAATGTTCGAAAAAACCTCAAAAGATCACAGATTGGAAAAGAGCAAAATCGCTGAAAAATCAGAAAACACTAATGCTCAACAAGATTGTCGCAATTTTCAAAAATTCGAAAAATCATACTTTCGAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCYCACCCCGGAAAAATTTGAATGTGCGTCCCCTTCCGATGTTTTTTGATTCTTCTCTTTTTTTGCGACAGACAGATTTGGCCACCTGGTGTGCCCATGGGGGTCTTTTCCCGATTTTTCCACAGAACTGTCATTTTGCCCTTCTAGGGGAAAATATATCTATACCCCATTCGCACGTTACGCCATACACCTCGTTCCGTCCCCGGTCCGTCCGGCCTTTCACAGGTTGACAAGGCTAATGTTCTTTGTGTGCGGCCCCCGGAGAGAAACGGTGTCTGGCGCGAGGCACATGGAGGTCTTTTTGAAGGGTACTACACTTCAGTCGGTTCATCGCAGAAAAAGGAGAAACGCATCACACACTAATTTGGTCGTTCGCTTTTTTGTTCTTCTCTTTTTCTCTGTTGTCCATTCATCTCTAGGTTTAATTGCTCGCCAAGGTAACAGATCCCCATTATTTTTTTTGAAAGCATCTTCGGTCGTCTGGCCTTTAAAATGGACTAAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>505 255 240</canonical_bands>
                <polymorphic_bands>745 255</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>500 408 92</canonical_bands>
                <polymorphic_bands>592 408</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>500 408 92</canonical_bands>
                <polymorphic_bands>592 408</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>257 256 247 240</canonical_bands>
                <polymorphic_bands>496 257 247</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATTCGAAAGACCATCAA</pcr_primer_p1>
		<pcr_primer_p2>AATGACAGTTCTGTGGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGAATGTGCGTCCCCTTCCGATGTTTTTTGATTCTTCTCTTTTTTTGCGACAGACAGATTTGGCCACCTGGTGTGCCCATGGGGGTCTTTTCCCGATTTTTCCACAGAACTGTCATT</canonical_amplicon>
		<polymorphic_amplicon>GAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCYCACCCCGGAAAAATTTGAATGTGCGTCCCCTTCCGATGTTTTTTGATTCTTCTCTTTTTTTGCGACAGACAGATTTGGCCACCTGGTGTGCCCATGGGGGTCTTTTCCCGATTTTTCCACAGAACTGTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21908</snp_id>
        <super_contig>c013301088.Contig1</super_contig>
        <contig_pos>9297</contig_pos>
        <strand>+</strand>
        <context>TTTTTTTGCG[A/G]CAGACAGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAATGTGCGTCCCCTTCCGATGTTTTTTGATTCTTCTCTTTTTTTGCG</left_flank>
        <right_flank>CAGACAGATTTGGCCACCTGGTGTGCCCATGGGGGTCTTTTCCCGATTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTATCCACCACTCTTCTTGATTCTTTTCGTGAACTATGTTCCCTTTGTATCTAACCGAAGCATTCAAATTCAAAATTCCGTGCGCTCCTGTTCCAGTCACAAGGTTACACCGGATTATACAAAGTGCAATTTTTTATACTAAAAATCGTGAAGTCAAAGGGTGCGGCACGCGTCGCTCAAGATACCAGGCACCAAATACAAAATGTTCGAAAAAACCTCAAAAGATCACAGATTGGAAAAGAGCAAAATCGCTGAAAAATCAGAAAACACTAATGCTCAACAAGATTGTCGCAATTTTCAAAAATTCGAAAAATCATACTTTCGAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGAATGTGCGTCCCCTTCCGATGTTTTTTGATTCTTCTCTTTTTTTGCGACAGACAGATTTGGCCACCTGGTGTGCCCATGGGGGTCTTTTCCCGATTTTTCCACAGAACTGTCATTTTGCCCTTCTAGGGGAAAATATATCTATACCCCATTCGCACGTTACGCCATACACCTCGTTCCGTCCCCGGTCCGTCCGGCCTTTCACAGGTTGACAAGGCTAATGTTCTTTGTGTGCGGCCCCCGGAGAGAAACGGTGTCTGGCGCGAGGCACATGGAGGTCTTTTTGAAGGGTACTACACTTCAGTCGGTTCATCGCAGAAAAAGGAGAAACGCATCACACACTAATTTGGTCGTTCGCTTTTTTGTTCTTCTCTTTTTCTCTGTTGTCCATTCATCTCTAGGTTTAATTGCTCGCCAAGGTAACAGATCCCCATTATTTTTTTTGAAAGCATCTTCGGTCGTCTGGCCTTTAAAATGGACTAAGGAAGAAAAATAGTGCAGCAAATGTCAGAAAACGTTGAAGGATCGATACTGGATGAAATTTCAAAGC</canonical>
            <polymorphic>CAGTATCCACCACTCTTCTTGATTCTTTTCGTGAACTATGTTCCCTTTGTATCTAACCGAAGCATTCAAATTCAAAATTCCGTGCGCTCCTGTTCCAGTCACAAGGTTACACCGGATTATACAAAGTGCAATTTTTTATACTAAAAATCGTGAAGTCAAAGGGTGCGGCACGCGTCGCTCAAGATACCAGGCACCAAATACAAAATGTTCGAAAAAACCTCAAAAGATCACAGATTGGAAAAGAGCAAAATCGCTGAAAAATCAGAAAACACTAATGCTCAACAAGATTGTCGCAATTTTCAAAAATTCGAAAAATCATACTTTCGAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGAATGTGCGTCCCCTTCCGATGTTTTTTGATTCTTCTCTTTTTTTGCGRCAGACAGATTTGGCCACCTGGTGTGCCCATGGGGGTCTTTTCCCGATTTTTCCACAGAACTGTCATTTTGCCCTTCTAGGGGAAAATATATCTATACCCCATTCGCACGTTACGCCATACACCTCGTTCCGTCCCCGGTCCGTCCGGCCTTTCACAGGTTGACAAGGCTAATGTTCTTTGTGTGCGGCCCCCGGAGAGAAACGGTGTCTGGCGCGAGGCACATGGAGGTCTTTTTGAAGGGTACTACACTTCAGTCGGTTCATCGCAGAAAAAGGAGAAACGCATCACACACTAATTTGGTCGTTCGCTTTTTTGTTCTTCTCTTTTTCTCTGTTGTCCATTCATCTCTAGGTTTAATTGCTCGCCAAGGTAACAGATCCCCATTATTTTTTTTGAAAGCATCTTCGGTCGTCTGGCCTTTAAAATGGACTAAGGAAGAAAAATAGTGCAGCAAATGTCAGAAAACGTTGAAGGATCGATACTGGATGAAATTTCAAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATTCGAAAGACCATCAA</pcr_primer_p1>
		<pcr_primer_p2>AATGACAGTTCTGTGGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGAATGTGCGTCCCCTTCCGATGTTTTTTGATTCTTCTCTTTTTTTGCGACAGACAGATTTGGCCACCTGGTGTGCCCATGGGGGTCTTTTCCCGATTTTTCCACAGAACTGTCATT</canonical_amplicon>
		<polymorphic_amplicon>GAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGAATGTGCGTCCCCTTCCGATGTTTTTTGATTCTTCTCTTTTTTTGCGRCAGACAGATTTGGCCACCTGGTGTGCCCATGGGGGTCTTTTCCCGATTTTTCCACAGAACTGTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21909</snp_id>
        <super_contig>c013301088.Contig1</super_contig>
        <contig_pos>9409</contig_pos>
        <strand>+</strand>
        <context>TTCGCACGTT[A/G]CGCCATACAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCATTTTGCCCTTCTAGGGGAAAATATATCTATACCCCATTCGCACGTT</left_flank>
        <right_flank>CGCCATACACCTCGTTCCGTCCCCGGTCCGTCCGGCCTTTCACAGGTTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGATTATACAAAGTGCAATTTTTTATACTAAAAATCGTGAAGTCAAAGGGTGCGGCACGCGTCGCTCAAGATACCAGGCACCAAATACAAAATGTTCGAAAAAACCTCAAAAGATCACAGATTGGAAAAGAGCAAAATCGCTGAAAAATCAGAAAACACTAATGCTCAACAAGATTGTCGCAATTTTCAAAAATTCGAAAAATCATACTTTCGAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGAATGTGCGTCCCCTTCCGATGTTTTTTGATTCTTCTCTTTTTTTGCGACAGACAGATTTGGCCACCTGGTGTGCCCATGGGGGTCTTTTCCCGATTTTTCCACAGAACTGTCATTTTGCCCTTCTAGGGGAAAATATATCTATACCCCATTCGCACGTTACGCCATACACCTCGTTCCGTCCCCGGTCCGTCCGGCCTTTCACAGGTTGACAAGGCTAATGTTCTTTGTGTGCGGCCCCCGGAGAGAAACGGTGTCTGGCGCGAGGCACATGGAGGTCTTTTTGAAGGGTACTACACTTCAGTCGGTTCATCGCAGAAAAAGGAGAAACGCATCACACACTAATTTGGTCGTTCGCTTTTTTGTTCTTCTCTTTTTCTCTGTTGTCCATTCATCTCTAGGTTTAATTGCTCGCCAAGGTAACAGATCCCCATTATTTTTTTTGAAAGCATCTTCGGTCGTCTGGCCTTTAAAATGGACTAAGGAAGAAAAATAGTGCAGCAAATGTCAGAAAACGTTGAAGGATCGATACTGGATGAAATTTCAAAGCGGATTCACAAAATTCTGAATCTTTCTTTTCATCCTGGAACGCCGTAACCAGCATGAAACTTGATGTTGTGTATTAGATAACTCATCACTTTTGGCAAATTTCTCAAATTTTT</canonical>
            <polymorphic>CGGATTATACAAAGTGCAATTTTTTATACTAAAAATCGTGAAGTCAAAGGGTGCGGCACGCGTCGCTCAAGATACCAGGCACCAAATACAAAATGTTCGAAAAAACCTCAAAAGATCACAGATTGGAAAAGAGCAAAATCGCTGAAAAATCAGAAAACACTAATGCTCAACAAGATTGTCGCAATTTTCAAAAATTCGAAAAATCATACTTTCGAAATTCGAAAGACCATCAAAAAACACTTGGTGCGTGTCGGAGTGCATTTCAAACATTTTGAAAATTGGAAACCCATCTGTCTCCCACACATCAGGAAAATTTGGGTGCCCACCCCGGAAAAATTTGAATGTGCGTCCCCTTCCGATGTTTTTTGATTCTTCTCTTTTTTTGCGACAGACAGATTTGGCCACCTGGTGTGCCCATGGGGGTCTTTTCCCGATTTTTCCACAGAACTGTCATTTTGCCCTTCTAGGGGAAAATATATCTATACCCCATTCGCACGTTRCGCCATACACCTCGTTCCGTCCCCGGTCCGTCCGGCCTTTCACAGGTTGACAAGGCTAATGTTCTTTGTGTGCGGCCCCCGGAGAGAAACGGTGTCTGGCGCGAGGCACATGGAGGTCTTTTTGAAGGGTACTACACTTCAGTCGGTTCATCGCAGAAAAAGGAGAAACGCATCACACACTAATTTGGTCGTTCGCTTTTTTGTTCTTCTCTTTTTCTCTGTTGTCCATTCATCTCTAGGTTTAATTGCTCGCCAAGGTAACAGATCCCCATTATTTTTTTTGAAAGCATCTTCGGTCGTCTGGCCTTTAAAATGGACTAAGGAAGAAAAATAGTGCAGCAAATGTCAGAAAACGTTGAAGGATCGATACTGGATGAAATTTCAAAGCGGATTCACAAAATTCTGAATCTTTCTTTTCATCCTGGAACGCCGTAACCAGCATGAAACTTGATGTTGTGTATTAGATAACTCATCACTTTTGGCAAATTTCTCAAATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>496 261 174 69</canonical_bands>
                <polymorphic_bands>757 174 69</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCCACAGAACTGTCATT</pcr_primer_p1>
		<pcr_primer_p2>ATTAGTGTGTGATGCGTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCCACAGAACTGTCATTTTGCCCTTCTAGGGGAAAATATATCTATACCCCATTCGCACGTTACGCCATACACCTCGTTCCGTCCCCGGTCCGTCCGGCCTTTCACAGGTTGACAAGGCTAATGTTCTTTGTGTGCGGCCCCCGGAGAGAAACGGTGTCTGGCGCGAGGCACATGGAGGTCTTTTTGAAGGGTACTACACTTCAGTCGGTTCATCGCAGAAAAAGGAGAAACGCATCACACACTAAT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCCACAGAACTGTCATTTTGCCCTTCTAGGGGAAAATATATCTATACCCCATTCGCACGTTRCGCCATACACCTCGTTCCGTCCCCGGTCCGTCCGGCCTTTCACAGGTTGACAAGGCTAATGTTCTTTGTGTGCGGCCCCCGGAGAGAAACGGTGTCTGGCGCGAGGCACATGGAGGTCTTTTTGAAGGGTACTACACTTCAGTCGGTTCATCGCAGAAAAAGGAGAAACGCATCACACACTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21910</snp_id>
        <super_contig>c013301088.Contig1</super_contig>
        <contig_pos>13218</contig_pos>
        <strand>+</strand>
        <context>CTCTTGCATT[A/G]AGCGGAATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCGGTCAATCCACGGCTTCAGGCATGGAGAGTTTGGGAGCTCTTGCATT</left_flank>
        <right_flank>AGCGGAATGAGAAATCCAGATATCTCTGGAATGCTGTCCGGAGGTGGTGG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGTCTCCATCTTCGGAAATTCGAAGGGCTCCTATCAATCCATTGATCTCTTCACTCGAAGGCTATTCACGTACGTTCTTCTCCACATTTTCAAGGACGCACTTGTTCTTCAGAACGGCCCGAAAAAAACTAAGAAGATGAATGAGACCACCCCTAAGAAAACCACCTAGTCGGGCAACTAGTCGGGGGAGTGAATGATTCAAAAAATAGATAGTAGTAATTGATGGTGTAATTTTGAACAAAAAGTCTATAACGAATTGTATTCTTTTAGGAATTTTTGGGGGTCTGAAAAATGTGAATCAAAAAAAATTCCAGCTCAATTCGCTGCATCTGAATACAATGCCATGCCACAACTTTCCCAAGCATCTGATACTCCAAGAAACCCATTCAGCTATCAAGCCAACCAACCATCAACCTACTCGGTTATGCCAGAGATGTCTCAAAATAAAATCGGTCAATCCACGGCTTCAGGCATGGAGAGTTTGGGAGCTCTTGCATTAAGCGGAATGAGAAATCCAGATATCTCTGGAATGCTGTCCGGAGGTGGTGGCACACCAGAAGCTATTAATGCAGTTAGAAACCAAGCGTATCTAGCAGAACTTTCCAAACATCAATCTGAACTTAATGCCTATAGTGCTAAGCAAATGGAATACCTGGACCAACAAAGAAGATACCAACAGGCTATGATTGACCATCAAGCTGGAGCAGCGGTATCTAAGAATTATTCGAAAATTTGGGTATTTTACATTTTTCCAGCTTCTTATGCAAAAACAACAACAGGAAATTATTGCCAAGCAAATGCAGAACATGAAGCAATCCTATGGAGTTGGAGAAAACGCTCCAGGAGAATCCAAGGATTTTGAGGAAAATGATAATACTGTAGGAGGCAGGGTAAACATCTCATCCTCTTATTTCTCCCGATTTACGATTATTACAGTATCTCACCGCGCGGGCCAGAGGAGCGAAAACGATGAAAGTGCCGACAAACAGAAGTTTGTCT</canonical>
            <polymorphic>CCGTCTCCATCTTCGGAAATTCGAAGGGCTCCTATCAATCCATTGATCTCTTCACTCGAAGGCTATTCACGTACGTTCTTCTCCACATTTTCAAGGACGCACTTGTTCTTCAGAACGGCCCGAAAAAAACTAAGAAGATGAATGAGACCACCCCTAAGAAAACCACCTAGTCGGGCAACTAGTCGGGGGAGTGAATGATTCAAAAAATAGATAGTAGTAATTGATGGTGTAATTTTGAACAAAAAGTCTATAACGAATTGTATTCTTTTAGGAATTTTTGGGGGTCTGAAAAATGTGAATCAAAAAAAATTCCAGCTCAATTCGCTGCATCTGAATACAATGCCATGCCACAACTTTCCCAAGCATCTGATACTCCAAGAAACCCATTCAGCTATCAAGCCAACCAACCATCAACCTACTCGGTTATGCCAGAGATGTCTCAAAATAAAATCGGTCAATCCACGGCTTCAGGCATGGAGAGTTTGGGAGCTCTTGCATTRAGCGGAATGAGAAATCCAGATATCTCTGGAATGCTGTCCGGAGGTGGTGGCACACCAGAAGCTATTAATGCAGTTAGAAACCAAGCGTATCTAGCAGAACTTTCCAAACATCAATCTGAACTTAATGCCTATAGTGCTAAGCAAATGGAATACCTGGACCAACAAAGAAGATACCAACAGGCTATGATTGACCATCAAGCTGGAGCAGCGGTATCTAAGAATTATTCGAAAATTTGGGTATTTTACATTTTTCCAGCTTCTTATGCAAAAACAACAACAGGAAATTATTGCCAAGCAAATGCAGAACATGAAGCAATCCTATGGAGTTGGAGAAAACGCTCCAGGAGAATCCAAGGATTTTGAGGAAAATGATAATACTGTAGGAGGCAGGGTAAACATCTCATCCTCTTATTTCTCCCGATTTACGATTATTACAGTATCTCACCGCGCGGGCCAGAGGAGCGAAAACGATGAAAGTGCCGACAAACAGAAGTTTGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>498 378 67 57</canonical_bands>
                <polymorphic_bands>565 378 57</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCATCTGATACTCCAAGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TGTTTGGAAAGTTCTGCTAGATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGCATCTGATACTCCAAGAAACCCATTCAGCTATCAAGCCAACCAACCATCAACCTACTCGGTTATGCCAGAGATGTCTCAAAATAAAATCGGTCAATCCACGGCTTCAGGCATGGAGAGTTTGGGAGCTCTTGCATTAAGCGGAATGAGAAATCCAGATATCTCTGGAATGCTGTCCGGAGGTGGTGGCACACCAGAAGCTATTAATGCAGTTAGAAACCAAGCGTATCTAGCAGAACTTTCCAAACA</canonical_amplicon>
		<polymorphic_amplicon>AGCATCTGATACTCCAAGAAACCCATTCAGCTATCAAGCCAACCAACCATCAACCTACTCGGTTATGCCAGAGATGTCTCAAAATAAAATCGGTCAATCCACGGCTTCAGGCATGGAGAGTTTGGGAGCTCTTGCATTRAGCGGAATGAGAAATCCAGATATCTCTGGAATGCTGTCCGGAGGTGGTGGCACACCAGAAGCTATTAATGCAGTTAGAAACCAAGCGTATCTAGCAGAACTTTCCAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21911</snp_id>
        <super_contig>c013301088.Contig1</super_contig>
        <contig_pos>13163</contig_pos>
        <strand>+</strand>
        <context>ATGTCTCAAA[A/C]TAAAATCGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCAAGCCAACCAACCATCAACCTACTCGGTTATGCCAGAGATGTCTCAAA</left_flank>
        <right_flank>TAAAATCGGTCAATCCACGGCTTCAGGCATGGAGAGTTTGGGAGCTCTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCCCGGAGATGGATCGTAAACCGACCGAAGCCCCAACGCCAGCTCCAGCTGCGCCGTCTCCATCTTCGGAAATTCGAAGGGCTCCTATCAATCCATTGATCTCTTCACTCGAAGGCTATTCACGTACGTTCTTCTCCACATTTTCAAGGACGCACTTGTTCTTCAGAACGGCCCGAAAAAAACTAAGAAGATGAATGAGACCACCCCTAAGAAAACCACCTAGTCGGGCAACTAGTCGGGGGAGTGAATGATTCAAAAAATAGATAGTAGTAATTGATGGTGTAATTTTGAACAAAAAGTCTATAACGAATTGTATTCTTTTAGGAATTTTTGGGGGTCTGAAAAATGTGAATCAAAAAAAATTCCAGCTCAATTCGCTGCATCTGAATACAATGCCATGCCACAACTTTCCCAAGCATCTGATACTCCAAGAAACCCATTCAGCTATCAAGCCAACCAACCATCAACCTACTCGGTTATGCCAGAGATGTCTCAAAATAAAATCGGTCAATCCACGGCTTCAGGCATGGAGAGTTTGGGAGCTCTTGCATTAAGCGGAATGAGAAATCCAGATATCTCTGGAATGCTGTCCGGAGGTGGTGGCACACCAGAAGCTATTAATGCAGTTAGAAACCAAGCGTATCTAGCAGAACTTTCCAAACATCAATCTGAACTTAATGCCTATAGTGCTAAGCAAATGGAATACCTGGACCAACAAAGAAGATACCAACAGGCTATGATTGACCATCAAGCTGGAGCAGCGGTATCTAAGAATTATTCGAAAATTTGGGTATTTTACATTTTTCCAGCTTCTTATGCAAAAACAACAACAGGAAATTATTGCCAAGCAAATGCAGAACATGAAGCAATCCTATGGAGTTGGAGAAAACGCTCCAGGAGAATCCAAGGATTTTGAGGAAAATGATAATACTGTAGGAGGCAGGGTAAACATCTCATCCTCTTATTTCTCCCGATTTACGATTATTACAGTATCTCAC</canonical>
            <polymorphic>GTTCCCGGAGATGGATCGTAAACCGACCGAAGCCCCAACGCCAGCTCCAGCTGCGCCGTCTCCATCTTCGGAAATTCGAAGGGCTCCTATCAATCCATTGATCTCTTCACTCGAAGGCTATTCACGTACGTTCTTCTCCACATTTTCAAGGACGCACTTGTTCTTCAGAACGGCCCGAAAAAAACTAAGAAGATGAATGAGACCACCCCTAAGAAAACCACCTAGTCGGGCAACTAGTCGGGGGAGTGAATGATTCAAAAAATAGATAGTAGTAATTGATGGTGTAATTTTGAACAAAAAGTCTATAACGAATTGTATTCTTTTAGGAATTTTTGGGGGTCTGAAAAATGTGAATCAAAAAAAATTCCAGCTCAATTCGCTGCATCTGAATACAATGCCATGCCACAACTTTCCCAAGCATCTGATACTCCAAGAAACCCATTCAGCTATCAAGCCAACCAACCATCAACCTACTCGGTTATGCCAGAGATGTCTCAAAMTAAAATCGGTCAATCCACGGCTTCAGGCATGGAGAGTTTGGGAGCTCTTGCATTAAGCGGAATGAGAAATCCAGATATCTCTGGAATGCTGTCCGGAGGTGGTGGCACACCAGAAGCTATTAATGCAGTTAGAAACCAAGCGTATCTAGCAGAACTTTCCAAACATCAATCTGAACTTAATGCCTATAGTGCTAAGCAAATGGAATACCTGGACCAACAAAGAAGATACCAACAGGCTATGATTGACCATCAAGCTGGAGCAGCGGTATCTAAGAATTATTCGAAAATTTGGGTATTTTACATTTTTCCAGCTTCTTATGCAAAAACAACAACAGGAAATTATTGCCAAGCAAATGCAGAACATGAAGCAATCCTATGGAGTTGGAGAAAACGCTCCAGGAGAATCCAAGGATTTTGAGGAAAATGATAATACTGTAGGAGGCAGGGTAAACATCTCATCCTCTTATTTCTCCCGATTTACGATTATTACAGTATCTCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCATCTGATACTCCAAGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TGTTTGGAAAGTTCTGCTAGATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGCATCTGATACTCCAAGAAACCCATTCAGCTATCAAGCCAACCAACCATCAACCTACTCGGTTATGCCAGAGATGTCTCAAAATAAAATCGGTCAATCCACGGCTTCAGGCATGGAGAGTTTGGGAGCTCTTGCATTAAGCGGAATGAGAAATCCAGATATCTCTGGAATGCTGTCCGGAGGTGGTGGCACACCAGAAGCTATTAATGCAGTTAGAAACCAAGCGTATCTAGCAGAACTTTCCAAACA</canonical_amplicon>
		<polymorphic_amplicon>AGCATCTGATACTCCAAGAAACCCATTCAGCTATCAAGCCAACCAACCATCAACCTACTCGGTTATGCCAGAGATGTCTCAAAMTAAAATCGGTCAATCCACGGCTTCAGGCATGGAGAGTTTGGGAGCTCTTGCATTAAGCGGAATGAGAAATCCAGATATCTCTGGAATGCTGTCCGGAGGTGGTGGCACACCAGAAGCTATTAATGCAGTTAGAAACCAAGCGTATCTAGCAGAACTTTCCAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21912</snp_id>
        <super_contig>c013301088.Contig1</super_contig>
        <contig_pos>12919</contig_pos>
        <strand>+</strand>
        <context>GTGAATGATT[C/G]AAAAAATAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCCCTAAGAAAACCACCTAGTCGGGCAACTAGTCGGGGGAGTGAATGATT</left_flank>
        <right_flank>AAAAAATAGATAGTAGTAATTGATGGTGTAATTTTGAACAAAAAGTCTAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATTATTCGGTGTCCCCCCATTGGTCCATGCTGCTTAATAAAACGAATTTCATATTGGCACTAGCCATTCTTGGCAGCAGCTATGCCAAGGAAGAAGAGAAAACACCCGGAGAAGAGAGTAAGTTTTATAATCCACATTTCGAATTTCATCCCCACCATTTGCCAATCAAGCACATCTGCTCATCCAATTTCAGTGATTGATCGTTTAGCAGTGAACATGGCAGGTGCATTCGTCAAGAGTATGTTCCCGGAGATGGATCGTAAACCGACCGAAGCCCCAACGCCAGCTCCAGCTGCGCCGTCTCCATCTTCGGAAATTCGAAGGGCTCCTATCAATCCATTGATCTCTTCACTCGAAGGCTATTCACGTACGTTCTTCTCCACATTTTCAAGGACGCACTTGTTCTTCAGAACGGCCCGAAAAAAACTAAGAAGATGAATGAGACCACCCCTAAGAAAACCACCTAGTCGGGCAACTAGTCGGGGGAGTGAATGATTCAAAAAATAGATAGTAGTAATTGATGGTGTAATTTTGAACAAAAAGTCTATAACGAATTGTATTCTTTTAGGAATTTTTGGGGGTCTGAAAAATGTGAATCAAAAAAAATTCCAGCTCAATTCGCTGCATCTGAATACAATGCCATGCCACAACTTTCCCAAGCATCTGATACTCCAAGAAACCCATTCAGCTATCAAGCCAACCAACCATCAACCTACTCGGTTATGCCAGAGATGTCTCAAAATAAAATCGGTCAATCCACGGCTTCAGGCATGGAGAGTTTGGGAGCTCTTGCATTAAGCGGAATGAGAAATCCAGATATCTCTGGAATGCTGTCCGGAGGTGGTGGCACACCAGAAGCTATTAATGCAGTTAGAAACCAAGCGTATCTAGCAGAACTTTCCAAACATCAATCTGAACTTAATGCCTATAGTGCTAAGCAAATGGAATACCTGGACCAACAAAGAAGATACCAACAGGCTATGATTGACCATCAAGCT</canonical>
            <polymorphic>TGATTATTCGGTGTCCCCCCATTGGTCCATGCTGCTTAATAAAACGAATTTCATATTGGCACTAGCCATTCTTGGCAGCAGCTATGCCAAGGAAGAAGAGAAAACACCCGGAGAAGAGAGTAAGTTTTATAATCCACATTTCGAATTTCATCCCCACCATTTGCCAATCAAGCACATCTGCTCATCCAATTTCAGTGATTGATCGTTTAGCAGTGAACATGGCAGGTGCATTCGTCAAGAGTATGTTCCCGGAGATGGATCGTAAACCGACCGAAGCCCCAACGCCAGCTCCAGCTGCGCCGTCTCCATCTTCGGAAATTCGAAGGGCTCCTATCAATCCATTGATCTCTTCACTCGAAGGCTATTCACGTACGTTCTTCTCCACATTTTCAAGGACGCACTTGTTCTTCAGAACGGCCCGAAAAAAACTAAGAAGATGAATGAGACCACCCCTAAGAAAACCACCTAGTCGGGCAACTAGTCGGGGGAGTGAATGATTSAAAAAATAGATAGTAGTAATTGATGGTGTAATTTTGAACAAAAAGTCTATAACGAATTGTATTCTTTTAGGAATTTTTGGGGGTCTGAAAAATGTGAATCAAAAAAAATTCCAGCTCAATTCGCTGCATCTGAATACAATGCCATGCCACAACTTTCCCAAGCATCTGATACTCCAAGAAACCCATTCAGCTATCAAGCCAACCAACCATCAACCTACTCGGTTATGCCAGAGATGTCTCAAAATAAAATCGGTCAATCCACGGCTTCAGGCATGGAGAGTTTGGGAGCTCTTGCATTAAGCGGAATGAGAAATCCAGATATCTCTGGAATGCTGTCCGGAGGTGGTGGCACACCAGAAGCTATTAATGCAGTTAGAAACCAAGCGTATCTAGCAGAACTTTCCAAACATCAATCTGAACTTAATGCCTATAGTGCTAAGCAAATGGAATACCTGGACCAACAAAGAAGATACCAACAGGCTATGATTGACCATCAAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>496 404 100</canonical_bands>
                <polymorphic_bands>596 404</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>496 404 100</canonical_bands>
                <polymorphic_bands>596 404</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAATCCATTGATCTCTTCACT</pcr_primer_p1>
		<pcr_primer_p2>CCCAAAAATTCCTAAAAGAATAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCAATCCATTGATCTCTTCACTCGAAGGCTATTCACGTACGTTCTTCTCCACATTTTCAAGGACGCACTTGTTCTTCAGAACGGCCCGAAAAAAACTAAGAAGATGAATGAGACCACCCCTAAGAAAACCACCTAGTCGGGCAACTAGTCGGGGGAGTGAATGATTCAAAAAATAGATAGTAGTAATTGATGGTGTAATTTTGAACAAAAAGTCTATAACGAATTGTATTCTTTTAGGAATTTTTGGG</canonical_amplicon>
		<polymorphic_amplicon>TCAATCCATTGATCTCTTCACTCGAAGGCTATTCACGTACGTTCTTCTCCACATTTTCAAGGACGCACTTGTTCTTCAGAACGGCCCGAAAAAAACTAAGAAGATGAATGAGACCACCCCTAAGAAAACCACCTAGTCGGGCAACTAGTCGGGGGAGTGAATGATTSAAAAAATAGATAGTAGTAATTGATGGTGTAATTTTGAACAAAAAGTCTATAACGAATTGTATTCTTTTAGGAATTTTTGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21913</snp_id>
        <super_contig>c013301088.Contig1</super_contig>
        <contig_pos>96391</contig_pos>
        <strand>+</strand>
        <context>AATGGTCAAC[G/T]GTGTAGTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTCCACCGATCAGAATGCAATTTCTGAGTAGGGCTGAATAATGGTCAAC</left_flank>
        <right_flank>GTGTAGTTTTGGAAATAAAAAATGGTGGAGGAGGGGAGAAATTTTTGATA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAAATAGTGGCAAGAGTAAATTCATAGTTTTAGCTAGATAAAACTTCTAATAGATAAAACTTCTAATCTGTATATTCCATTTTTTTTCTTCTGGCAAAGCTAGTGAGCAAAAAAATGAATTGTTTCTATAAACCAAGTAAGCTAAATTTCTGATTGATGCGGCGCTCTGTATTGTTTACTGTTTTCTCTTGGTGATTGACCAGACATCGGGGTGCTCAGTAGCTGGGGGGGGGGGGGGGGGAAGAATAACAATTTCTCCGCATGGGTTAACATTGTTTTTTGAGTATTTCGTACTGTTTGATAAGAATTGACGTAGCATCGCTTTTTTCGTTGAAATTTGGAACTATAGAGTATTCCAGTTCATTCTATTCGCATGTTCTTTTCTTTTAATTAATCAAAGAATTGTAATCTCAACAAACTAACAAAAAAGAGAACTTTACCCCCTGCATTCCACCGATCAGAATGCAATTTCTGAGTAGGGCTGAATAATGGTCAACGGTGTAGTTTTGGAAATAAAAAATGGTGGAGGAGGGGAGAAATTTTTGATAAGAAAAGTACTTACCCGCCTTGTCCACTGTCTACATTTTCAGTGCTTGTTTCGTTTTGACAGTTCTGAAATTTGTATTTTCGAGCCTCGTTTTCACTAGCTTTTCGGAACAAAGCATCCCCATAGAACGAAAAAAAAAAGTTGAACTCTAACCCCTATATTTTGTTTTGACGGCTTTTTCCCAATAGTTTTCCTTCAGTTTTGTTGCCTCTATTTCTTTTCTATCCTCGCCTCATAGAACTCCCTAAATGCGGTTTGTGAGAAATGAGTGTTTGTATCGGACTGCGCGGTGTCCGCCAGAGTCCGTTCGTCCGGCCTCCGCCAATCCTCTTCCCTACCCCGTTTTTTGTCTCCATTTGCGTAGTTTTCCTGCCTGCAGAAGTTTTTTATTCCCTCCGCTTCCATCTTTTCACGACCGGGTACGGGCAAATGAAAATGCGCTTGATTCCTC</canonical>
            <polymorphic>AATAAATAGTGGCAAGAGTAAATTCATAGTTTTAGCTAGATAAAACTTCTAATAGATAAAACTTCTAATCTGTATATTCCATTTTTTTTCTTCTGGCAAAGCTAGTGAGCAAAAAAATGAATTGTTTCTATAAACCAAGTAAGCTAAATTTCTGATTGATGCGGCGCTCTGTATTGTTTACTGTTTTCTCTTGGTGATTGACCAGACATCGGGGTGCTCAGTAGCTGGGGGGGGGGGGGGGGGAAGAATAACAATTTCTCCGCATGGGTTAACATTGTTTTTTGAGTATTTCGTACTGTTTGATAAGAATTGACGTAGCATCGCTTTTTTCGTTGAAATTTGGAACTATAGAGTATTCCAGTTCATTCTATTCGCATGTTCTTTTCTTTTAATTAATCAAAGAATTGTAATCTCAACAAACTAACAAAAAAGAGAACTTTACCCCCTGCATTCCACCGATCAGAATGCAATTTCTGAGTAGGGCTGAATAATGGTCAACKGTGTAGTTTTGGAAATAAAAAATGGTGGAGGAGGGGAGAAATTTTTGATAAGAAAAGTACTTACCCGCCTTGTCCACTGTCTACATTTTCAGTGCTTGTTTCGTTTTGACAGTTCTGAAATTTGTATTTTCGAGCCTCGTTTTCACTAGCTTTTCGGAACAAAGCATCCCCATAGAACGAAAAAAAAAAGTTGAACTCTAACCCCTATATTTTGTTTTGACGGCTTTTTCCCAATAGTTTTCCTTCAGTTTTGTTGCCTCTATTTCTTTTCTATCCTCGCCTCATAGAACTCCCTAAATGCGGTTTGTGAGAAATGAGTGTTTGTATCGGACTGCGCGGTGTCCGCCAGAGTCCGTTCGTCCGGCCTCCGCCAATCCTCTTCCCTACCCCGTTTTTTGTCTCCATTTGCGTAGTTTTCCTGCCTGCAGAAGTTTTTTATTCCCTCCGCTTCCATCTTTTCACGACCGGGTACGGGCAAATGAAAATGCGCTTGATTCCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATTCGCATGTTCTTTTCTT</pcr_primer_p1>
		<pcr_primer_p2>AGAACTGTCAAAACGAAACAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTATTCGCATGTTCTTTTCTTTTAATTAATCAAAGAATTGTAATCTCAACAAACTAACAAAAAAGAGAACTTTACCCCCTGCATTCCACCGATCAGAATGCAATTTCTGAGTAGGGCTGAATAATGGTCAACGGTGTAGTTTTGGAAATAAAAAATGGTGGAGGAGGGGAGAAATTTTTGATAAGAAAAGTACTTACCCGCCTTGTCCACTGTCTACATTTTCAGTGCTTGTTTCGTTTTGACAGTTCT</canonical_amplicon>
		<polymorphic_amplicon>TCTATTCGCATGTTCTTTTCTTTTAATTAATCAAAGAATTGTAATCTCAACAAACTAACAAAAAAGAGAACTTTACCCCCTGCATTCCACCGATCAGAATGCAATTTCTGAGTAGGGCTGAATAATGGTCAACKGTGTAGTTTTGGAAATAAAAAATGGTGGAGGAGGGGAGAAATTTTTGATAAGAAAAGTACTTACCCGCCTTGTCCACTGTCTACATTTTCAGTGCTTGTTTCGTTTTGACAGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21914</snp_id>
        <super_contig>c013301088.Contig1</super_contig>
        <contig_pos>96579</contig_pos>
        <strand></strand>
        <context>CGWAAAAAAA[A/T]AGTTGAACTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGTTTTCACTAGCTTTTCGGAACAAAGCATCCCCATAGAACGAAAAAAAA</left_flank>
        <right_flank>AGTTGAACTCTAACCCCTATATTTTGTTTTGACGGCTTTTTCCCAATAGT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTGGTGATTGACCAGACATCGGGGTGCTCAGTAGCTGGGGGGGGGGGGGGGGGAAGAATAACAATTTCTCCGCATGGGTTAACATTGTTTTTTGAGTATTTCGTACTGTTTGATAAGAATTGACGTAGCATCGCTTTTTTCGTTGAAATTTGGAACTATAGAGTATTCCAGTTCATTCTATTCGCATGTTCTTTTCTTTTAATTAATCAAAGAATTGTAATCTCAACAAACTAACAAAAAAGAGAACTTTACCCCCTGCATTCCACCGATCAGAATGCAATTTCTGAGTAGGGCTGAATAATGGTCAACGGTGTAGTTTTGGAAATAAAAAATGGTGGAGGAGGGGAGAAATTTTTGATAAGAAAAGTACTTACCCGCCTTGTCCACTGTCTACATTTTCAGTGCTTGTTTCGTTTTGACAGTTCTGAAATTTGTATTTTCGAGCCTCGTTTTCACTAGCTTTTCGGAACAAAGCATCCCCATAGAACGAAAAAAAAAAGTTGAACTCTAACCCCTATATTTTGTTTTGACGGCTTTTTCCCAATAGTTTTCCTTCAGTTTTGTTGCCTCTATTTCTTTTCTATCCTCGCCTCATAGAACTCCCTAAATGCGGTTTGTGAGAAATGAGTGTTTGTATCGGACTGCGCGGTGTCCGCCAGAGTCCGTTCGTCCGGCCTCCGCCAATCCTCTTCCCTACCCCGTTTTTTGTCTCCATTTGCGTAGTTTTCCTGCCTGCAGAAGTTTTTTATTCCCTCCGCTTCCATCTTTTCACGACCGGGTACGGGCAAATGAAAATGCGCTTGATTCCTCCCTCTTATTTCCTGTTGACTAAGATGGAAGAAGAAAAAACTAAGAAATTTTTTTAGTCAATCTTCAAAAGTGGTTTGATTGACATCAACGCCCTCCCATAGCCCAGAGTCATTTCACAACTAACAGAGTCTTTTGGACCCTCCATGTTGGGCTTTTCACATCCCGGATGGATAGCTTTTACATACTTG</canonical>
            <polymorphic>TCTTGGTGATTGACCAGACATCGGGGTGCTCAGTAGCTGGGGGGGGGGGGGGGGGAAGAATAACAATTTCTCCGCATGGGTTAACATTGTTTTTTGAGTATTTCGTACTGTTTGATAAGAATTGACGTAGCATCGCTTTTTTCGTTGAAATTTGGAACTATAGAGTATTCCAGTTCATTCTATTCGCATGTTCTTTTCTTTTAATTAATCAAAGAATTGTAATCTCAACAAACTAACAAAAAAGAGAACTTTACCCCCTGCATTCCACCGATCAGAATGCAATTTCTGAGTAGGGCTGAATAATGGTCAACGGTGTAGTTTTGGAAATAAAAAATGGTGGAGGAGGGGAGAAATTTTTGATAAGAAAAGTACTTACCCGCCTTGTCCACTGTCTACATTTTCAGTGCTTGTTTCGTTTTGACAGTTCTGAAATTTGTATTTTCGAGCCTCGTTTTCACTAGCTTTTCGGAACAAAGCATCCCCATAGAACGAAAAAAAAWAGTTGAACTCTAACCCCTATATTTTGTTTTGACGGCTTTTTCCCAATAGTTTTCCTTCAGTTTTGTTGCCTCTATTTCTTTTCTATCCTCGCCTCATAGAACTCCCTAAATGCGGTTTGTGAGAAATGAGTGTTTGTATCGGACTGCGCGGTGTCCGCCAGAGTCCGTTCGTCCGGCCTCCGCCAATCCTCTTCCCTACCCCGTTTTTTGTCTCCATTTGCGTAGTTTTCCTGCCTGCAGAAGTTTTTTATTCCCTCCGCTTCCATCTTTTCACGACCGGGTACGGGCAAATGAAAATGCGCTTGATTCCTCCCTCTTATTTCCTGTTGACTAAGATGGAAGAAGAAAAAACTAAGAAATTTTTTTAGTCAATCTTCAAAAGTGGTTTGATTGACATCAACGCCCTCCCATAGCCCAGAGTCATTTCACAACTAACAGAGTCTTTTGGACCCTCCATGTTGGGCTTTTCACATCCCGGATGGATAGCTTTTACATACTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTACATTTTCAGTGCTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>GATACAAACACTCATTTCTCACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCTACATTTTCAGTGCTTGTTTCGTTTTGACAGTTCTGAAATTTGTATTTTCGAGCCTCGTTTTCACTAGCTTTTCGGAACAAAGCATCCCCATAGAACGAAAAAAAAAAGTTGAACTCTAACCCCTATATTTTGTTTTGACGGCTTTTTCCCAATAGTTTTCCTTCAGTTTTGTTGCCTCTATTTCTTTTCTATCCTCGCCTCATAGAACTCCCTAAATGCGGTTTGTGAGAAATGAGTGTTTGTATC</canonical_amplicon>
		<polymorphic_amplicon>GTCTACATTTTCAGTGCTTGTTTCGTTTTGACAGTTCTGAAATTTGTATTTTCGAGCCTCGTTTTCACTAGCTTTTCGGAACAAAGCATCCCCATAGAACGAAAAAAAAWAGTTGAACTCTAACCCCTATATTTTGTTTTGACGGCTTTTTCCCAATAGTTTTCCTTCAGTTTTGTTGCCTCTATTTCTTTTCTATCCTCGCCTCATAGAACTCCCTAAATGCGGTTTGTGAGAAATGAGTGTTTGTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21915</snp_id>
        <super_contig>c013301088.Contig1</super_contig>
        <contig_pos>96621</contig_pos>
        <strand>+</strand>
        <context>ACGGCTTTTT[C/T]CCAATAGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAAAAAAGTTGAACTCTAACCCCTATATTTTGTTTTGACGGCTTTTT</left_flank>
        <right_flank>CCAATAGTTTTCCTTCAGTTTTGTTGCCTCTATTTCTTTTCTATCCTCGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGGGGGGGGGGGAAGAATAACAATTTCTCCGCATGGGTTAACATTGTTTTTTGAGTATTTCGTACTGTTTGATAAGAATTGACGTAGCATCGCTTTTTTCGTTGAAATTTGGAACTATAGAGTATTCCAGTTCATTCTATTCGCATGTTCTTTTCTTTTAATTAATCAAAGAATTGTAATCTCAACAAACTAACAAAAAAGAGAACTTTACCCCCTGCATTCCACCGATCAGAATGCAATTTCTGAGTAGGGCTGAATAATGGTCAACGGTGTAGTTTTGGAAATAAAAAATGGTGGAGGAGGGGAGAAATTTTTGATAAGAAAAGTACTTACCCGCCTTGTCCACTGTCTACATTTTCAGTGCTTGTTTCGTTTTGACAGTTCTGAAATTTGTATTTTCGAGCCTCGTTTTCACTAGCTTTTCGGAACAAAGCATCCCCATAGAACGAAAAAAAAAAGTTGAACTCTAACCCCTATATTTTGTTTTGACGGCTTTTTCCCAATAGTTTTCCTTCAGTTTTGTTGCCTCTATTTCTTTTCTATCCTCGCCTCATAGAACTCCCTAAATGCGGTTTGTGAGAAATGAGTGTTTGTATCGGACTGCGCGGTGTCCGCCAGAGTCCGTTCGTCCGGCCTCCGCCAATCCTCTTCCCTACCCCGTTTTTTGTCTCCATTTGCGTAGTTTTCCTGCCTGCAGAAGTTTTTTATTCCCTCCGCTTCCATCTTTTCACGACCGGGTACGGGCAAATGAAAATGCGCTTGATTCCTCCCTCTTATTTCCTGTTGACTAAGATGGAAGAAGAAAAAACTAAGAAATTTTTTTAGTCAATCTTCAAAAGTGGTTTGATTGACATCAACGCCCTCCCATAGCCCAGAGTCATTTCACAACTAACAGAGTCTTTTGGACCCTCCATGTTGGGCTTTTCACATCCCGGATGGATAGCTTTTACATACTTGGAAAAGGCGAATACATGCACTATTTTGCTTTTGGTCCGAAAA</canonical>
            <polymorphic>GGGGGGGGGGGGGAAGAATAACAATTTCTCCGCATGGGTTAACATTGTTTTTTGAGTATTTCGTACTGTTTGATAAGAATTGACGTAGCATCGCTTTTTTCGTTGAAATTTGGAACTATAGAGTATTCCAGTTCATTCTATTCGCATGTTCTTTTCTTTTAATTAATCAAAGAATTGTAATCTCAACAAACTAACAAAAAAGAGAACTTTACCCCCTGCATTCCACCGATCAGAATGCAATTTCTGAGTAGGGCTGAATAATGGTCAACGGTGTAGTTTTGGAAATAAAAAATGGTGGAGGAGGGGAGAAATTTTTGATAAGAAAAGTACTTACCCGCCTTGTCCACTGTCTACATTTTCAGTGCTTGTTTCGTTTTGACAGTTCTGAAATTTGTATTTTCGAGCCTCGTTTTCACTAGCTTTTCGGAACAAAGCATCCCCATAGAACGAAAAAAAAAAGTTGAACTCTAACCCCTATATTTTGTTTTGACGGCTTTTTYCCAATAGTTTTCCTTCAGTTTTGTTGCCTCTATTTCTTTTCTATCCTCGCCTCATAGAACTCCCTAAATGCGGTTTGTGAGAAATGAGTGTTTGTATCGGACTGCGCGGTGTCCGCCAGAGTCCGTTCGTCCGGCCTCCGCCAATCCTCTTCCCTACCCCGTTTTTTGTCTCCATTTGCGTAGTTTTCCTGCCTGCAGAAGTTTTTTATTCCCTCCGCTTCCATCTTTTCACGACCGGGTACGGGCAAATGAAAATGCGCTTGATTCCTCCCTCTTATTTCCTGTTGACTAAGATGGAAGAAGAAAAAACTAAGAAATTTTTTTAGTCAATCTTCAAAAGTGGTTTGATTGACATCAACGCCCTCCCATAGCCCAGAGTCATTTCACAACTAACAGAGTCTTTTGGACCCTCCATGTTGGGCTTTTCACATCCCGGATGGATAGCTTTTACATACTTGGAAAAGGCGAATACATGCACTATTTTGCTTTTGGTCCGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTACATTTTCAGTGCTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>GATACAAACACTCATTTCTCACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCTACATTTTCAGTGCTTGTTTCGTTTTGACAGTTCTGAAATTTGTATTTTCGAGCCTCGTTTTCACTAGCTTTTCGGAACAAAGCATCCCCATAGAACGAAAAAAAAAAGTTGAACTCTAACCCCTATATTTTGTTTTGACGGCTTTTTCCCAATAGTTTTCCTTCAGTTTTGTTGCCTCTATTTCTTTTCTATCCTCGCCTCATAGAACTCCCTAAATGCGGTTTGTGAGAAATGAGTGTTTGTATC</canonical_amplicon>
		<polymorphic_amplicon>GTCTACATTTTCAGTGCTTGTTTCGTTTTGACAGTTCTGAAATTTGTATTTTCGAGCCTCGTTTTCACTAGCTTTTCGGAACAAAGCATCCCCATAGAACGAAAAAAAAAAGTTGAACTCTAACCCCTATATTTTGTTTTGACGGCTTTTTYCCAATAGTTTTCCTTCAGTTTTGTTGCCTCTATTTCTTTTCTATCCTCGCCTCATAGAACTCCCTAAATGCGGTTTGTGAGAAATGAGTGTTTGTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21916</snp_id>
        <super_contig>c013301088.Contig1</super_contig>
        <contig_pos>96669</contig_pos>
        <strand>+</strand>
        <context>TTTCTATCCT[C/T]KCCTCATAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCCAATAGTTTTCCTTCAGTTTTGTTGCCTCTATTTCTTTTCTATCCT</left_flank>
        <right_flank>GCCTCATAGAACTCCCTAAATGCGGTTTGTGAGAAATGAGTGTTTGTATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGAGTATTTCGTACTGTTTGATAAGAATTGACGTAGCATCGCTTTTTTCGTTGAAATTTGGAACTATAGAGTATTCCAGTTCATTCTATTCGCATGTTCTTTTCTTTTAATTAATCAAAGAATTGTAATCTCAACAAACTAACAAAAAAGAGAACTTTACCCCCTGCATTCCACCGATCAGAATGCAATTTCTGAGTAGGGCTGAATAATGGTCAACGGTGTAGTTTTGGAAATAAAAAATGGTGGAGGAGGGGAGAAATTTTTGATAAGAAAAGTACTTACCCGCCTTGTCCACTGTCTACATTTTCAGTGCTTGTTTCGTTTTGACAGTTCTGAAATTTGTATTTTCGAGCCTCGTTTTCACTAGCTTTTCGGAACAAAGCATCCCCATAGAACGAAAAAAAAAAGTTGAACTCTAACCCCTATATTTTGTTTTGACGGCTTTTTCCCAATAGTTTTCCTTCAGTTTTGTTGCCTCTATTTCTTTTCTATCCTCGCCTCATAGAACTCCCTAAATGCGGTTTGTGAGAAATGAGTGTTTGTATCGGACTGCGCGGTGTCCGCCAGAGTCCGTTCGTCCGGCCTCCGCCAATCCTCTTCCCTACCCCGTTTTTTGTCTCCATTTGCGTAGTTTTCCTGCCTGCAGAAGTTTTTTATTCCCTCCGCTTCCATCTTTTCACGACCGGGTACGGGCAAATGAAAATGCGCTTGATTCCTCCCTCTTATTTCCTGTTGACTAAGATGGAAGAAGAAAAAACTAAGAAATTTTTTTAGTCAATCTTCAAAAGTGGTTTGATTGACATCAACGCCCTCCCATAGCCCAGAGTCATTTCACAACTAACAGAGTCTTTTGGACCCTCCATGTTGGGCTTTTCACATCCCGGATGGATAGCTTTTACATACTTGGAAAAGGCGAATACATGCACTATTTTGCTTTTGGTCCGAAAAAACAACCCATAGAAGTAAAACATTTCTTGCTCTCACTCGTTTTCTATT</canonical>
            <polymorphic>TTTTTGAGTATTTCGTACTGTTTGATAAGAATTGACGTAGCATCGCTTTTTTCGTTGAAATTTGGAACTATAGAGTATTCCAGTTCATTCTATTCGCATGTTCTTTTCTTTTAATTAATCAAAGAATTGTAATCTCAACAAACTAACAAAAAAGAGAACTTTACCCCCTGCATTCCACCGATCAGAATGCAATTTCTGAGTAGGGCTGAATAATGGTCAACGGTGTAGTTTTGGAAATAAAAAATGGTGGAGGAGGGGAGAAATTTTTGATAAGAAAAGTACTTACCCGCCTTGTCCACTGTCTACATTTTCAGTGCTTGTTTCGTTTTGACAGTTCTGAAATTTGTATTTTCGAGCCTCGTTTTCACTAGCTTTTCGGAACAAAGCATCCCCATAGAACGAAAAAAAAAAGTTGAACTCTAACCCCTATATTTTGTTTTGACGGCTTTTTCCCAATAGTTTTCCTTCAGTTTTGTTGCCTCTATTTCTTTTCTATCCTYGCCTCATAGAACTCCCTAAATGCGGTTTGTGAGAAATGAGTGTTTGTATCGGACTGCGCGGTGTCCGCCAGAGTCCGTTCGTCCGGCCTCCGCCAATCCTCTTCCCTACCCCGTTTTTTGTCTCCATTTGCGTAGTTTTCCTGCCTGCAGAAGTTTTTTATTCCCTCCGCTTCCATCTTTTCACGACCGGGTACGGGCAAATGAAAATGCGCTTGATTCCTCCCTCTTATTTCCTGTTGACTAAGATGGAAGAAGAAAAAACTAAGAAATTTTTTTAGTCAATCTTCAAAAGTGGTTTGATTGACATCAACGCCCTCCCATAGCCCAGAGTCATTTCACAACTAACAGAGTCTTTTGGACCCTCCATGTTGGGCTTTTCACATCCCGGATGGATAGCTTTTACATACTTGGAAAAGGCGAATACATGCACTATTTTGCTTTTGGTCCGAAAAAACAACCCATAGAAGTAAAACATTTCTTGCTCTCACTCGTTTTCTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTACATTTTCAGTGCTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TCCGATACAAACACTCATTTC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GTCTACATTTTCAGTGCTTGTTTCGTTTTGACAGTTCTGAAATTTGTATTTTCGAGCCTCGTTTTCACTAGCTTTTCGGAACAAAGCATCCCCATAGAACGAAAAAAAAAAGTTGAACTCTAACCCCTATATTTTGTTTTGACGGCTTTTTCCCAATAGTTTTCCTTCAGTTTTGTTGCCTCTATTTCTTTTCTATCCTCGCCTCATAGAACTCCCTAAATGCGGTTTGTGAGAAATGAGTGTTTGTATCGGA</canonical_amplicon>
		<polymorphic_amplicon>GTCTACATTTTCAGTGCTTGTTTCGTTTTGACAGTTCTGAAATTTGTATTTTCGAGCCTCGTTTTCACTAGCTTTTCGGAACAAAGCATCCCCATAGAACGAAAAAAAAAAGTTGAACTCTAACCCCTATATTTTGTTTTGACGGCTTTTTCCCAATAGTTTTCCTTCAGTTTTGTTGCCTCTATTTCTTTTCTATCCTYGCCTCATAGAACTCCCTAAATGCGGTTTGTGAGAAATGAGTGTTTGTATCGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21917</snp_id>
        <super_contig>c013301088.Contig1</super_contig>
        <contig_pos>96670</contig_pos>
        <strand>+</strand>
        <context>TTCTATCCTY[G/T]CCTCATAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCCCAATAGTTTTCCTTCAGTTTTGTTGCCTCTATTTCTTTTCTATCCTC</left_flank>
        <right_flank>CCTCATAGAACTCCCTAAATGCGGTTTGTGAGAAATGAGTGTTTGTATCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGAGTATTTCGTACTGTTTGATAAGAATTGACGTAGCATCGCTTTTTTCGTTGAAATTTGGAACTATAGAGTATTCCAGTTCATTCTATTCGCATGTTCTTTTCTTTTAATTAATCAAAGAATTGTAATCTCAACAAACTAACAAAAAAGAGAACTTTACCCCCTGCATTCCACCGATCAGAATGCAATTTCTGAGTAGGGCTGAATAATGGTCAACGGTGTAGTTTTGGAAATAAAAAATGGTGGAGGAGGGGAGAAATTTTTGATAAGAAAAGTACTTACCCGCCTTGTCCACTGTCTACATTTTCAGTGCTTGTTTCGTTTTGACAGTTCTGAAATTTGTATTTTCGAGCCTCGTTTTCACTAGCTTTTCGGAACAAAGCATCCCCATAGAACGAAAAAAAAAAGTTGAACTCTAACCCCTATATTTTGTTTTGACGGCTTTTTCCCAATAGTTTTCCTTCAGTTTTGTTGCCTCTATTTCTTTTCTATCCTCGCCTCATAGAACTCCCTAAATGCGGTTTGTGAGAAATGAGTGTTTGTATCGGACTGCGCGGTGTCCGCCAGAGTCCGTTCGTCCGGCCTCCGCCAATCCTCTTCCCTACCCCGTTTTTTGTCTCCATTTGCGTAGTTTTCCTGCCTGCAGAAGTTTTTTATTCCCTCCGCTTCCATCTTTTCACGACCGGGTACGGGCAAATGAAAATGCGCTTGATTCCTCCCTCTTATTTCCTGTTGACTAAGATGGAAGAAGAAAAAACTAAGAAATTTTTTTAGTCAATCTTCAAAAGTGGTTTGATTGACATCAACGCCCTCCCATAGCCCAGAGTCATTTCACAACTAACAGAGTCTTTTGGACCCTCCATGTTGGGCTTTTCACATCCCGGATGGATAGCTTTTACATACTTGGAAAAGGCGAATACATGCACTATTTTGCTTTTGGTCCGAAAAAACAACCCATAGAAGTAAAACATTTCTTGCTCTCACTCGTTTTCTATTC</canonical>
            <polymorphic>TTTTGAGTATTTCGTACTGTTTGATAAGAATTGACGTAGCATCGCTTTTTTCGTTGAAATTTGGAACTATAGAGTATTCCAGTTCATTCTATTCGCATGTTCTTTTCTTTTAATTAATCAAAGAATTGTAATCTCAACAAACTAACAAAAAAGAGAACTTTACCCCCTGCATTCCACCGATCAGAATGCAATTTCTGAGTAGGGCTGAATAATGGTCAACGGTGTAGTTTTGGAAATAAAAAATGGTGGAGGAGGGGAGAAATTTTTGATAAGAAAAGTACTTACCCGCCTTGTCCACTGTCTACATTTTCAGTGCTTGTTTCGTTTTGACAGTTCTGAAATTTGTATTTTCGAGCCTCGTTTTCACTAGCTTTTCGGAACAAAGCATCCCCATAGAACGAAAAAAAAAAGTTGAACTCTAACCCCTATATTTTGTTTTGACGGCTTTTTCCCAATAGTTTTCCTTCAGTTTTGTTGCCTCTATTTCTTTTCTATCCTCKCCTCATAGAACTCCCTAAATGCGGTTTGTGAGAAATGAGTGTTTGTATCGGACTGCGCGGTGTCCGCCAGAGTCCGTTCGTCCGGCCTCCGCCAATCCTCTTCCCTACCCCGTTTTTTGTCTCCATTTGCGTAGTTTTCCTGCCTGCAGAAGTTTTTTATTCCCTCCGCTTCCATCTTTTCACGACCGGGTACGGGCAAATGAAAATGCGCTTGATTCCTCCCTCTTATTTCCTGTTGACTAAGATGGAAGAAGAAAAAACTAAGAAATTTTTTTAGTCAATCTTCAAAAGTGGTTTGATTGACATCAACGCCCTCCCATAGCCCAGAGTCATTTCACAACTAACAGAGTCTTTTGGACCCTCCATGTTGGGCTTTTCACATCCCGGATGGATAGCTTTTACATACTTGGAAAAGGCGAATACATGCACTATTTTGCTTTTGGTCCGAAAAAACAACCCATAGAAGTAAAACATTTCTTGCTCTCACTCGTTTTCTATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTACATTTTCAGTGCTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TCCGATACAAACACTCATTTC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GTCTACATTTTCAGTGCTTGTTTCGTTTTGACAGTTCTGAAATTTGTATTTTCGAGCCTCGTTTTCACTAGCTTTTCGGAACAAAGCATCCCCATAGAACGAAAAAAAAAAGTTGAACTCTAACCCCTATATTTTGTTTTGACGGCTTTTTCCCAATAGTTTTCCTTCAGTTTTGTTGCCTCTATTTCTTTTCTATCCTCGCCTCATAGAACTCCCTAAATGCGGTTTGTGAGAAATGAGTGTTTGTATCGGA</canonical_amplicon>
		<polymorphic_amplicon>GTCTACATTTTCAGTGCTTGTTTCGTTTTGACAGTTCTGAAATTTGTATTTTCGAGCCTCGTTTTCACTAGCTTTTCGGAACAAAGCATCCCCATAGAACGAAAAAAAAAAGTTGAACTCTAACCCCTATATTTTGTTTTGACGGCTTTTTCCCAATAGTTTTCCTTCAGTTTTGTTGCCTCTATTTCTTTTCTATCCTCKCCTCATAGAACTCCCTAAATGCGGTTTGTGAGAAATGAGTGTTTGTATCGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21918</snp_id>
        <super_contig>c013301088.Contig1</super_contig>
        <contig_pos>96863</contig_pos>
        <strand>+</strand>
        <context>CGACCGGGTA[C/G]GGGCAAATGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCTGCAGAAGTTTTTTATTCCCTCCGCTTCCATCTTTTCACGACCGGGTA</left_flank>
        <right_flank>GGGCAAATGAAAATGCGCTTGATTCCTCCCTCTTATTTCCTGTTGACTAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGAGTAGGGCTGAATAATGGTCAACGGTGTAGTTTTGGAAATAAAAAATGGTGGAGGAGGGGAGAAATTTTTGATAAGAAAAGTACTTACCCGCCTTGTCCACTGTCTACATTTTCAGTGCTTGTTTCGTTTTGACAGTTCTGAAATTTGTATTTTCGAGCCTCGTTTTCACTAGCTTTTCGGAACAAAGCATCCCCATAGAACGAAAAAAAAAAGTTGAACTCTAACCCCTATATTTTGTTTTGACGGCTTTTTCCCAATAGTTTTCCTTCAGTTTTGTTGCCTCTATTTCTTTTCTATCCTCGCCTCATAGAACTCCCTAAATGCGGTTTGTGAGAAATGAGTGTTTGTATCGGACTGCGCGGTGTCCGCCAGAGTCCGTTCGTCCGGCCTCCGCCAATCCTCTTCCCTACCCCGTTTTTTGTCTCCATTTGCGTAGTTTTCCTGCCTGCAGAAGTTTTTTATTCCCTCCGCTTCCATCTTTTCACGACCGGGTACGGGCAAATGAAAATGCGCTTGATTCCTCCCTCTTATTTCCTGTTGACTAAGATGGAAGAAGAAAAAACTAAGAAATTTTTTTAGTCAATCTTCAAAAGTGGTTTGATTGACATCAACGCCCTCCCATAGCCCAGAGTCATTTCACAACTAACAGAGTCTTTTGGACCCTCCATGTTGGGCTTTTCACATCCCGGATGGATAGCTTTTACATACTTGGAAAAGGCGAATACATGCACTATTTTGCTTTTGGTCCGAAAAAACAACCCATAGAAGTAAAACATTTCTTGCTCTCACTCGTTTTCTATTCTTCTATTCTATCGTCATGAATTATGTTCCGGTTAGAAGTGCAGGAGACCTTCAAACTTCAATTTCACTAGTATTTTTCACATATGAGCAACTTCCATTACCATCACTTTATGAGTTTTTTTTGAAGTGACAACCAATGGTCAAACTAGTCAGCCTTCAATAGGTTTGATCTACGGTAGCGACACTTGCGTTCG</canonical>
            <polymorphic>TCTGAGTAGGGCTGAATAATGGTCAACGGTGTAGTTTTGGAAATAAAAAATGGTGGAGGAGGGGAGAAATTTTTGATAAGAAAAGTACTTACCCGCCTTGTCCACTGTCTACATTTTCAGTGCTTGTTTCGTTTTGACAGTTCTGAAATTTGTATTTTCGAGCCTCGTTTTCACTAGCTTTTCGGAACAAAGCATCCCCATAGAACGAAAAAAAAAAGTTGAACTCTAACCCCTATATTTTGTTTTGACGGCTTTTTCCCAATAGTTTTCCTTCAGTTTTGTTGCCTCTATTTCTTTTCTATCCTCGCCTCATAGAACTCCCTAAATGCGGTTTGTGAGAAATGAGTGTTTGTATCGGACTGCGCGGTGTCCGCCAGAGTCCGTTCGTCCGGCCTCCGCCAATCCTCTTCCCTACCCCGTTTTTTGTCTCCATTTGCGTAGTTTTCCTGCCTGCAGAAGTTTTTTATTCCCTCCGCTTCCATCTTTTCACGACCGGGTASGGGCAAATGAAAATGCGCTTGATTCCTCCCTCTTATTTCCTGTTGACTAAGATGGAAGAAGAAAAAACTAAGAAATTTTTTTAGTCAATCTTCAAAAGTGGTTTGATTGACATCAACGCCCTCCCATAGCCCAGAGTCATTTCACAACTAACAGAGTCTTTTGGACCCTCCATGTTGGGCTTTTCACATCCCGGATGGATAGCTTTTACATACTTGGAAAAGGCGAATACATGCACTATTTTGCTTTTGGTCCGAAAAAACAACCCATAGAAGTAAAACATTTCTTGCTCTCACTCGTTTTCTATTCTTCTATTCTATCGTCATGAATTATGTTCCGGTTAGAAGTGCAGGAGACCTTCAAACTTCAATTTCACTAGTATTTTTCACATATGAGCAACTTCCATTACCATCACTTTATGAGTTTTTTTTGAAGTGACAACCAATGGTCAAACTAGTCAGCCTTCAATAGGTTTGATCTACGGTAGCGACACTTGCGTTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 412 86</canonical_bands>
                <polymorphic_bands>914 86</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGTCTCCATTTGCGTAGT</pcr_primer_p1>
		<pcr_primer_p2>GTCCAAAAGACTCTGTTAGTTGT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTTGTCTCCATTTGCGTAGTTTTCCTGCCTGCAGAAGTTTTTTATTCCCTCCGCTTCCATCTTTTCACGACCGGGTACGGGCAAATGAAAATGCGCTTGATTCCTCCCTCTTATTTCCTGTTGACTAAGATGGAAGAAGAAAAAACTAAGAAATTTTTTTAGTCAATCTTCAAAAGTGGTTTGATTGACATCAACGCCCTCCCATAGCCCAGAGTCATTTCACAACTAACAGAGTCTTTTGGAC</canonical_amplicon>
		<polymorphic_amplicon>TTTGTCTCCATTTGCGTAGTTTTCCTGCCTGCAGAAGTTTTTTATTCCCTCCGCTTCCATCTTTTCACGACCGGGTASGGGCAAATGAAAATGCGCTTGATTCCTCCCTCTTATTTCCTGTTGACTAAGATGGAAGAAGAAAAAACTAAGAAATTTTTTTAGTCAATCTTCAAAAGTGGTTTGATTGACATCAACGCCCTCCCATAGCCCAGAGTCATTTCACAACTAACAGAGTCTTTTGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21919</snp_id>
        <super_contig>c013301088.Contig1</super_contig>
        <contig_pos>152314</contig_pos>
        <strand>+</strand>
        <context>TTAATTCCTA[A/C]TTTCTCTCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGGAAGTACAGTTTTTAAAAAATCTAAATATGTTACATTTTAATTCCTA</left_flank>
        <right_flank>TTTCTCTCAATATCTTTTCTGGGGAAAATCTCGGTATGTATTTTTGCACT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGTCGGGAATTCATGAAATAAGTATAATTTGTTATTCAGGGGACCAAAATGGATATAGAAAATTCGTCTCGAAAAAAACAAAAAAAAGAATTAACACAGTGGCGTTCGAACCACCATAGTCACTCTTAATGACTATGACCTAGATTTTTTTGTCATCGTGTTGCGGATAATTCAAACTATCAGCACTGAAATTTTTAGCAAATTCTCAACGCCCCTCTGAAAACACTTCCCTTGTTAGAAACTTAGTTATCTCAAATTCAGTATGAAATTAAAAAATATATATATGTATAATAAAGTATGTGTAACTGTGACAAATGCTTGATTAGTTGACAAGTTTTTGATATCTCTCATTGGAAATGAGATAATTGAGCTCACAGTGGAAGTATAGATTAGCCACAAGTCATTTTTTTGCCATTCTCCAATTGAGCGGAAGATTGTTTTCAAGAAACTGGAAGTACAGTTTTTAAAAAATCTAAATATGTTACATTTTAATTCCTACTTTCTCTCAATATCTTTTCTGGGGAAAATCTCGGTATGTATTTTTGCACTGAAAAATTATTCCAAATCTACAAACTATTTAGTATGATACTCTTTCATAATTGTTCCATTGAAATCTTTACGGATATTCAATGTTTGTTAAACAAAAATAAATAATTATTGAGTTTGCAGAAGATCTGTAATGATCACAAGAAGCTAAAATACAGTTATTTTGGTCTGATCAACTTTATCTTCGATTCTTAATAATATTTCCTTCAAAAAAATCAGTTAAACTCAGTCAAAGCCATTGATATTGGAAAACCTGAGAGACTCGTGGATAAACTATTTTTAGATTTACAATCACAAAAAATTTCACAAAAAACTATCACAAAGTTGGCCCTCGTGATTCATGTAAAAACATTGTCTGTCAAAGAATTTCGCTTTATTTCCAATCTTTTCTCTCTTGTGTTCTTATAATCTATTTTGAATCGACATCCACGGGAGCATTCATAAACCCTTCTT</canonical>
            <polymorphic>ACGTCGGGAATTCATGAAATAAGTATAATTTGTTATTCAGGGGACCAAAATGGATATAGAAAATTCGTCTCGAAAAAAACAAAAAAAAGAATTAACACAGTGGCGTTCGAACCACCATAGTCACTCTTAATGACTATGACCTAGATTTTTTTGTCATCGTGTTGCGGATAATTCAAACTATCAGCACTGAAATTTTTAGCAAATTCTCAACGCCCCTCTGAAAACACTTCCCTTGTTAGAAACTTAGTTATCTCAAATTCAGTATGAAATTAAAAAATATATATATGTATAATAAAGTATGTGTAACTGTGACAAATGCTTGATTAGTTGACAAGTTTTTGATATCTCTCATTGGAAATGAGATAATTGAGCTCACAGTGGAAGTATAGATTAGCCACAAGTCATTTTTTTGCCATTCTCCAATTGAGCGGAAGATTGTTTTCAAGAAACTGGAAGTACAGTTTTTAAAAAATCTAAATATGTTACATTTTAATTCCTAMTTTCTCTCAATATCTTTTCTGGGGAAAATCTCGGTATGTATTTTTGCACTGAAAAATTATTCCAAATCTACAAACTATTTAGTATGATACTCTTTCATAATTGTTCCATTGAAATCTTTACGGATATTCAATGTTTGTTAAACAAAAATAAATAATTATTGAGTTTGCAGAAGATCTGTAATGATCACAAGAAGCTAAAATACAGTTATTTTGGTCTGATCAACTTTATCTTCGATTCTTAATAATATTTCCTTCAAAAAAATCAGTTAAACTCAGTCAAAGCCATTGATATTGGAAAACCTGAGAGACTCGTGGATAAACTATTTTTAGATTTACAATCACAAAAAATTTCACAAAAAACTATCACAAAGTTGGCCCTCGTGATTCATGTAAAAACATTGTCTGTCAAAGAATTTCGCTTTATTTCCAATCTTTTCTCTCTTGTGTTCTTATAATCTATTTTGAATCGACATCCACGGGAGCATTCATAAACCCTTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGATTAGCCACAAGTCATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAACATTGAATATCCGTAAAGATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGATTAGCCACAAGTCATTTTTTTGCCATTCTCCAATTGAGCGGAAGATTGTTTTCAAGAAACTGGAAGTACAGTTTTTAAAAAATCTAAATATGTTACATTTTAATTCCTACTTTCTCTCAATATCTTTTCTGGGGAAAATCTCGGTATGTATTTTTGCACTGAAAAATTATTCCAAATCTACAAACTATTTAGTATGATACTCTTTCATAATTGTTCCATTGAAATCTTTACGGATATTCAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>TAGATTAGCCACAAGTCATTTTTTTGCCATTCTCCAATTGAGCGGAAGATTGTTTTCAAGAAACTGGAAGTACAGTTTTTAAAAAATCTAAATATGTTACATTTTAATTCCTAMTTTCTCTCAATATCTTTTCTGGGGAAAATCTCGGTATGTATTTTTGCACTGAAAAATTATTCCAAATCTACAAACTATTTAGTATGATACTCTTTCATAATTGTTCCATTGAAATCTTTACGGATATTCAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21920</snp_id>
        <super_contig>c013301088.Contig1</super_contig>
        <contig_pos>152475</contig_pos>
        <strand>+</strand>
        <context>AATAATTATT[A/G]AGTTTGCAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAATCTTTACGGATATTCAATGTTTGTTAAACAAAAATAAATAATTATT</left_flank>
        <right_flank>AGTTTGCAGAAGATCTGTAATGATCACAAGAAGCTAAAATACAGTTATTT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCGGATAATTCAAACTATCAGCACTGAAATTTTTAGCAAATTCTCAACGCCCCTCTGAAAACACTTCCCTTGTTAGAAACTTAGTTATCTCAAATTCAGTATGAAATTAAAAAATATATATATGTATAATAAAGTATGTGTAACTGTGACAAATGCTTGATTAGTTGACAAGTTTTTGATATCTCTCATTGGAAATGAGATAATTGAGCTCACAGTGGAAGTATAGATTAGCCACAAGTCATTTTTTTGCCATTCTCCAATTGAGCGGAAGATTGTTTTCAAGAAACTGGAAGTACAGTTTTTAAAAAATCTAAATATGTTACATTTTAATTCCTACTTTCTCTCAATATCTTTTCTGGGGAAAATCTCGGTATGTATTTTTGCACTGAAAAATTATTCCAAATCTACAAACTATTTAGTATGATACTCTTTCATAATTGTTCCATTGAAATCTTTACGGATATTCAATGTTTGTTAAACAAAAATAAATAATTATTGAGTTTGCAGAAGATCTGTAATGATCACAAGAAGCTAAAATACAGTTATTTTGGTCTGATCAACTTTATCTTCGATTCTTAATAATATTTCCTTCAAAAAAATCAGTTAAACTCAGTCAAAGCCATTGATATTGGAAAACCTGAGAGACTCGTGGATAAACTATTTTTAGATTTACAATCACAAAAAATTTCACAAAAAACTATCACAAAGTTGGCCCTCGTGATTCATGTAAAAACATTGTCTGTCAAAGAATTTCGCTTTATTTCCAATCTTTTCTCTCTTGTGTTCTTATAATCTATTTTGAATCGACATCCACGGGAGCATTCATAAACCCTTCTTTTCACCATGAATACCTCATGAAAACAGTCACTCTGCTCATGATATCAGAGTGACCTGGTACCCATTACGCAACAGTACCATCTCGCCATTGTGTATCACATACAGATCAGATGATAAGTTGATGAGTTCTGATAACCAAAACAGAGTCAGAAACCTGTATG</canonical>
            <polymorphic>TTGCGGATAATTCAAACTATCAGCACTGAAATTTTTAGCAAATTCTCAACGCCCCTCTGAAAACACTTCCCTTGTTAGAAACTTAGTTATCTCAAATTCAGTATGAAATTAAAAAATATATATATGTATAATAAAGTATGTGTAACTGTGACAAATGCTTGATTAGTTGACAAGTTTTTGATATCTCTCATTGGAAATGAGATAATTGAGCTCACAGTGGAAGTATAGATTAGCCACAAGTCATTTTTTTGCCATTCTCCAATTGAGCGGAAGATTGTTTTCAAGAAACTGGAAGTACAGTTTTTAAAAAATCTAAATATGTTACATTTTAATTCCTACTTTCTCTCAATATCTTTTCTGGGGAAAATCTCGGTATGTATTTTTGCACTGAAAAATTATTCCAAATCTACAAACTATTTAGTATGATACTCTTTCATAATTGTTCCATTGAAATCTTTACGGATATTCAATGTTTGTTAAACAAAAATAAATAATTATTRAGTTTGCAGAAGATCTGTAATGATCACAAGAAGCTAAAATACAGTTATTTTGGTCTGATCAACTTTATCTTCGATTCTTAATAATATTTCCTTCAAAAAAATCAGTTAAACTCAGTCAAAGCCATTGATATTGGAAAACCTGAGAGACTCGTGGATAAACTATTTTTAGATTTACAATCACAAAAAATTTCACAAAAAACTATCACAAAGTTGGCCCTCGTGATTCATGTAAAAACATTGTCTGTCAAAGAATTTCGCTTTATTTCCAATCTTTTCTCTCTTGTGTTCTTATAATCTATTTTGAATCGACATCCACGGGAGCATTCATAAACCCTTCTTTTCACCATGAATACCTCATGAAAACAGTCACTCTGCTCATGATATCAGAGTGACCTGGTACCCATTACGCAACAGTACCATCTCGCCATTGTGTATCACATACAGATCAGATGATAAGTTGATGAGTTCTGATAACCAAAACAGAGTCAGAAACCTGTATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTGAAAAATTATTCCAAATCT</pcr_primer_p1>
		<pcr_primer_p2>AATATCAATGGCTTTGACTGAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CACTGAAAAATTATTCCAAATCTACAAACTATTTAGTATGATACTCTTTCATAATTGTTCCATTGAAATCTTTACGGATATTCAATGTTTGTTAAACAAAAATAAATAATTATTGAGTTTGCAGAAGATCTGTAATGATCACAAGAAGCTAAAATACAGTTATTTTGGTCTGATCAACTTTATCTTCGATTCTTAATAATATTTCCTTCAAAAAAATCAGTTAAACTCAGTCAAAGCCATTGATATT</canonical_amplicon>
		<polymorphic_amplicon>CACTGAAAAATTATTCCAAATCTACAAACTATTTAGTATGATACTCTTTCATAATTGTTCCATTGAAATCTTTACGGATATTCAATGTTTGTTAAACAAAAATAAATAATTATTRAGTTTGCAGAAGATCTGTAATGATCACAAGAAGCTAAAATACAGTTATTTTGGTCTGATCAACTTTATCTTCGATTCTTAATAATATTTCCTTCAAAAAAATCAGTTAAACTCAGTCAAAGCCATTGATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21921</snp_id>
        <super_contig>c013301088.Contig1</super_contig>
        <contig_pos>154085</contig_pos>
        <strand>+</strand>
        <context>TATATTTCCA[A/T]ACGGCATATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATCATATCCCACAGTTTTTTATGACTTATACTTGTCCACTATATTTCCA</left_flank>
        <right_flank>ACGGCATATTTATTTCGGAACCAAAAAAAAAAACATCTGACACAATCACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTAGTCAATTACTTTATCATGCATCTTACTGTGACTGGAAACCTTTTTGTGAAAAATTTAAGATTTGAAGAATTTCCATTTTCATTTTCTTACATTTTTTGCCAATGGAAATAGTTTATGACTTTGTAAACGTATATGTTTTCAACTAGATTGAAGATTTTTCAACAAATTTCAAAAATTTTGTTTTATAATTCCAACTGCTAATTTTGAGACTGTTAAAATTTTTTTTTATTGTCTGTTCGAAAACTGTTTAATTGCATGGAAATTTGTTTTTGAATGAAACTTATTCCTTATCCAAAACACCAGCATTCAATATTCTCCTGAAATATCATGCCATCTCATCGTACTCCTCCAAATCATTTCCGGTTTGAAAACTGACACCCATGTACAATATGCCGACCGCCGACCCTCAGAAGTCCGAATCTGATCCGCTCATGCCCTCCTGTAAATCATATCCCACAGTTTTTTATGACTTATACTTGTCCACTATATTTCCAAACGGCATATTTATTTCGGAACCAAAAAAAAAAACATCTGACACAATCACATATCTAATAATTGAAACCCTAATAACGGAGAATACAGGAGTTGAAAATATAAAGTGACTTGGGGAAAGAAATAGTTAAAAATGAGAAAAATGAAATCCTTACATAATACTGGACATGCTGGAAATGTTAATGTGAAATGACAAAGAAAACGACTAAGAAGGGACAGAGAGGTATTGAGATGGAACAATTTTGAATTAGGAAGACAAGAAATGAAATTTCAAAATGATACAAGTCTACACAGTGGACAATTTTTGTGACTCTTTGCGTAATGAGAACAGATGGAATGGTGGGACCCAAATTATCAATACAATTTACTCAAAAATCTAATCAGAAGAGGTATCAAGATCATCTCTGGTTGGTGAAACCTGTGGGGAGGTCATTGGTGTTGAGCTAAAGCTATCCGTAAGGTTTTGAAGGATCAGTGTGACATCAGGCAGTGTAGCTACTCTT</canonical>
            <polymorphic>TTTTAGTCAATTACTTTATCATGCATCTTACTGTGACTGGAAACCTTTTTGTGAAAAATTTAAGATTTGAAGAATTTCCATTTTCATTTTCTTACATTTTTTGCCAATGGAAATAGTTTATGACTTTGTAAACGTATATGTTTTCAACTAGATTGAAGATTTTTCAACAAATTTCAAAAATTTTGTTTTATAATTCCAACTGCTAATTTTGAGACTGTTAAAATTTTTTTTTATTGTCTGTTCGAAAACTGTTTAATTGCATGGAAATTTGTTTTTGAATGAAACTTATTCCTTATCCAAAACACCAGCATTCAATATTCTCCTGAAATATCATGCCATCTCATCGTACTCCTCCAAATCATTTCCGGTTTGAAAACTGACACCCATGTACAATATGCCGACCGCCGACCCTCAGAAGTCCGAATCTGATCCGCTCATGCCCTCCTGTAAATCATATCCCACAGTTTTTTATGACTTATACTTGTCCACTATATTTCCAWACGGCATATTTATTTCGGAACCAAAAAAAAAAACATCTGACACAATCACATATCTAATAATTGAAACCCTAATAACGGAGAATACAGGAGTTGAAAATATAAAGTGACTTGGGGAAAGAAATAGTTAAAAATGAGAAAAATGAAATCCTTACATAATACTGGACATGCTGGAAATGTTAATGTGAAATGACAAAGAAAACGACTAAGAAGGGACAGAGAGGTATTGAGATGGAACAATTTTGAATTAGGAAGACAAGAAATGAAATTTCAAAATGATACAAGTCTACACAGTGGACAATTTTTGTGACTCTTTGCGTAATGAGAACAGATGGAATGGTGGGACCCAAATTATCAATACAATTTACTCAAAAATCTAATCAGAAGAGGTATCAAGATCATCTCTGGTTGGTGAAACCTGTGGGGAGGTCATTGGTGTTGAGCTAAAGCTATCCGTAAGGTTTTGAAGGATCAGTGTGACATCAGGCAGTGTAGCTACTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAAATCATATCCCACAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTTGTCATTTCACATTAACATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTAAATCATATCCCACAGTTTTTTATGACTTATACTTGTCCACTATATTTCCAAACGGCATATTTATTTCGGAACCAAAAAAAAAAACATCTGACACAATCACATATCTAATAATTGAAACCCTAATAACGGAGAATACAGGAGTTGAAAATATAAAGTGACTTGGGGAAAGAAATAGTTAAAAATGAGAAAAATGAAATCCTTACATAATACTGGACATGCTGGAAATGTTAATGTGAAATGACAAAG</canonical_amplicon>
		<polymorphic_amplicon>TGTAAATCATATCCCACAGTTTTTTATGACTTATACTTGTCCACTATATTTCCAWACGGCATATTTATTTCGGAACCAAAAAAAAAAACATCTGACACAATCACATATCTAATAATTGAAACCCTAATAACGGAGAATACAGGAGTTGAAAATATAAAGTGACTTGGGGAAAGAAATAGTTAAAAATGAGAAAAATGAAATCCTTACATAATACTGGACATGCTGGAAATGTTAATGTGAAATGACAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21922</snp_id>
        <super_contig>c013301088.Contig1</super_contig>
        <contig_pos>189992</contig_pos>
        <strand>+</strand>
        <context>GGCTCAAAAT[C/T]GGCTCGTTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTGCCCACATTTTCAATTTTGAAGCAAATTATCAGTCGGCTCAAAAT</left_flank>
        <right_flank>GGCTCGTTGGAAAGTATGCTCTAATCACAAGTTTACAAATAATTCTATAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAACTTGAAATCGGAGGAAACGTCTTTGCGTCTAGTTACTCAATGCTCTCAGAAGAAGCTGTCACGGACCCCAGCACCTTGCATTTCTATTACAACAAGAACGATCAAACGAGACTCACAACTCCGGAAAAAGCACTTGATTTGACCAAAGAAGGGAAATTCGCCAGACTGGATCATTACTTTGTTAGTTTTGCGATTAATATTAAACTCTCATTCATACTTGTCGACCAGCTAATCCTGGGCCGGCTGACATCTCGCTTCAAAATTGAAATTGTGGGAAGAAAAAATTCAGCTGATATAGCTCGGCGAATCCTACAACCTTCATAACAAATTGACCAACATTAAAATCAGTATCCGGGTGCGTGAAAAAATGCCTGCCTGGACCACGATACAATTTAATTTTTATCAATTTTTATCGAAGGTTGTAAAGCTTGTCTATCATCTGGGTTTTTTGCCCACATTTTCAATTTTGAAGCAAATTATCAGTCGGCTCAAAATCGGCTCGTTGGAAAGTATGCTCTAATCACAAGTTTACAAATAATTCTATACTTCAGGATGTTCATAACTTCAACGAGTTCACTGTGCGTGCCTACAAAAGAGTGATCAAAAATGAGACTGATCACTACGTTTTCTGGGATGAAGCTTATCAGTTTTTACTGTCAGCACGACGAAAACTAGGTCAACAAGACAATCAGTGGACAGTATGTCAGCAACGTGAGCCGGAGAATAGTCGAGTTTTGTTGGAATGATCATGCGAATTTTAGGTCTCCATAACAAAAATGTGGAAAAAATGACGGAGCACACCAAATTGAATATGATTACTGTGGAGGAGTTCAAGAAGCAGGTGGGAGAGCACAATGTCGACAGATTCAAAATCACAGTAAGTCAAAAAGGGTGTTTGTGACGCTGATTTTGGATTGCCTTCAGATCGTACCTGATGCTATTCAAATGGCGACCACACAAATTGCTATCGACGATCCATGCGCCGTTGTCTACACG</canonical>
            <polymorphic>GGAACTTGAAATCGGAGGAAACGTCTTTGCGTCTAGTTACTCAATGCTCTCAGAAGAAGCTGTCACGGACCCCAGCACCTTGCATTTCTATTACAACAAGAACGATCAAACGAGACTCACAACTCCGGAAAAAGCACTTGATTTGACCAAAGAAGGGAAATTCGCCAGACTGGATCATTACTTTGTTAGTTTTGCGATTAATATTAAACTCTCATTCATACTTGTCGACCAGCTAATCCTGGGCCGGCTGACATCTCGCTTCAAAATTGAAATTGTGGGAAGAAAAAATTCAGCTGATATAGCTCGGCGAATCCTACAACCTTCATAACAAATTGACCAACATTAAAATCAGTATCCGGGTGCGTGAAAAAATGCCTGCCTGGACCACGATACAATTTAATTTTTATCAATTTTTATCGAAGGTTGTAAAGCTTGTCTATCATCTGGGTTTTTTGCCCACATTTTCAATTTTGAAGCAAATTATCAGTCGGCTCAAAATYGGCTCGTTGGAAAGTATGCTCTAATCACAAGTTTACAAATAATTCTATACTTCAGGATGTTCATAACTTCAACGAGTTCACTGTGCGTGCCTACAAAAGAGTGATCAAAAATGAGACTGATCACTACGTTTTCTGGGATGAAGCTTATCAGTTTTTACTGTCAGCACGACGAAAACTAGGTCAACAAGACAATCAGTGGACAGTATGTCAGCAACGTGAGCCGGAGAATAGTCGAGTTTTGTTGGAATGATCATGCGAATTTTAGGTCTCCATAACAAAAATGTGGAAAAAATGACGGAGCACACCAAATTGAATATGATTACTGTGGAGGAGTTCAAGAAGCAGGTGGGAGAGCACAATGTCGACAGATTCAAAATCACAGTAAGTCAAAAAGGGTGTTTGTGACGCTGATTTTGGATTGCCTTCAGATCGTACCTGATGCTATTCAAATGGCGACCACACAAATTGCTATCGACGATCCATGCGCCGTTGTCTACACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATAACAAATTGACCAACATTA</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGTTATGAACATCCTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCATAACAAATTGACCAACATTAAAATCAGTATCCGGGTGCGTGAAAAAATGCCTGCCTGGACCACGATACAATTTAATTTTTATCAATTTTTATCGAAGGTTGTAAAGCTTGTCTATCATCTGGGTTTTTTGCCCACATTTTCAATTTTGAAGCAAATTATCAGTCGGCTCAAAATCGGCTCGTTGGAAAGTATGCTCTAATCACAAGTTTACAAATAATTCTATACTTCAGGATGTTCATAACTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TCATAACAAATTGACCAACATTAAAATCAGTATCCGGGTGCGTGAAAAAATGCCTGCCTGGACCACGATACAATTTAATTTTTATCAATTTTTATCGAAGGTTGTAAAGCTTGTCTATCATCTGGGTTTTTTGCCCACATTTTCAATTTTGAAGCAAATTATCAGTCGGCTCAAAATYGGCTCGTTGGAAAGTATGCTCTAATCACAAGTTTACAAATAATTCTATACTTCAGGATGTTCATAACTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21923</snp_id>
        <super_contig>c013301088.Contig1</super_contig>
        <contig_pos>190110</contig_pos>
        <strand>+</strand>
        <context>AAAATGAGAC[C/T]GATCACTACG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAACGAGTTCACTGTGCGTGCCTACAAAAGAGTGATCAAAAATGAGAC</left_flank>
        <right_flank>GATCACTACGTTTTCTGGGATGAAGCTTATCAGTTTTTACTGTCAGCACG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAACTCCGGAAAAAGCACTTGATTTGACCAAAGAAGGGAAATTCGCCAGACTGGATCATTACTTTGTTAGTTTTGCGATTAATATTAAACTCTCATTCATACTTGTCGACCAGCTAATCCTGGGCCGGCTGACATCTCGCTTCAAAATTGAAATTGTGGGAAGAAAAAATTCAGCTGATATAGCTCGGCGAATCCTACAACCTTCATAACAAATTGACCAACATTAAAATCAGTATCCGGGTGCGTGAAAAAATGCCTGCCTGGACCACGATACAATTTAATTTTTATCAATTTTTATCGAAGGTTGTAAAGCTTGTCTATCATCTGGGTTTTTTGCCCACATTTTCAATTTTGAAGCAAATTATCAGTCGGCTCAAAATCGGCTCGTTGGAAAGTATGCTCTAATCACAAGTTTACAAATAATTCTATACTTCAGGATGTTCATAACTTCAACGAGTTCACTGTGCGTGCCTACAAAAGAGTGATCAAAAATGAGACTGATCACTACGTTTTCTGGGATGAAGCTTATCAGTTTTTACTGTCAGCACGACGAAAACTAGGTCAACAAGACAATCAGTGGACAGTATGTCAGCAACGTGAGCCGGAGAATAGTCGAGTTTTGTTGGAATGATCATGCGAATTTTAGGTCTCCATAACAAAAATGTGGAAAAAATGACGGAGCACACCAAATTGAATATGATTACTGTGGAGGAGTTCAAGAAGCAGGTGGGAGAGCACAATGTCGACAGATTCAAAATCACAGTAAGTCAAAAAGGGTGTTTGTGACGCTGATTTTGGATTGCCTTCAGATCGTACCTGATGCTATTCAAATGGCGACCACACAAATTGCTATCGACGATCCATGCGCCGTTGTCTACACGTTCGTCTCCACTGTGAAAGTAATGGATACTAGCCAAGCGGTGCTGCGCATTGTTTTAGATGCAATTTCTGGAATCGATTGGAGAGAAGTGAATCTCTTTTCTGATCCCAACTTCGCCG</canonical>
            <polymorphic>ACAACTCCGGAAAAAGCACTTGATTTGACCAAAGAAGGGAAATTCGCCAGACTGGATCATTACTTTGTTAGTTTTGCGATTAATATTAAACTCTCATTCATACTTGTCGACCAGCTAATCCTGGGCCGGCTGACATCTCGCTTCAAAATTGAAATTGTGGGAAGAAAAAATTCAGCTGATATAGCTCGGCGAATCCTACAACCTTCATAACAAATTGACCAACATTAAAATCAGTATCCGGGTGCGTGAAAAAATGCCTGCCTGGACCACGATACAATTTAATTTTTATCAATTTTTATCGAAGGTTGTAAAGCTTGTCTATCATCTGGGTTTTTTGCCCACATTTTCAATTTTGAAGCAAATTATCAGTCGGCTCAAAATCGGCTCGTTGGAAAGTATGCTCTAATCACAAGTTTACAAATAATTCTATACTTCAGGATGTTCATAACTTCAACGAGTTCACTGTGCGTGCCTACAAAAGAGTGATCAAAAATGAGACYGATCACTACGTTTTCTGGGATGAAGCTTATCAGTTTTTACTGTCAGCACGACGAAAACTAGGTCAACAAGACAATCAGTGGACAGTATGTCAGCAACGTGAGCCGGAGAATAGTCGAGTTTTGTTGGAATGATCATGCGAATTTTAGGTCTCCATAACAAAAATGTGGAAAAAATGACGGAGCACACCAAATTGAATATGATTACTGTGGAGGAGTTCAAGAAGCAGGTGGGAGAGCACAATGTCGACAGATTCAAAATCACAGTAAGTCAAAAAGGGTGTTTGTGACGCTGATTTTGGATTGCCTTCAGATCGTACCTGATGCTATTCAAATGGCGACCACACAAATTGCTATCGACGATCCATGCGCCGTTGTCTACACGTTCGTCTCCACTGTGAAAGTAATGGATACTAGCCAAGCGGTGCTGCGCATTGTTTTAGATGCAATTTCTGGAATCGATTGGAGAGAAGTGAATCTCTTTTCTGATCCCAACTTCGCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>484 370 130 16</canonical_bands>
                <polymorphic_bands>484 370 146</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAATTTTGAAGCAAATTATC</pcr_primer_p1>
		<pcr_primer_p2>ACATACTGTCCACTGATTGTCTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTCAATTTTGAAGCAAATTATCAGTCGGCTCAAAATCGGCTCGTTGGAAAGTATGCTCTAATCACAAGTTTACAAATAATTCTATACTTCAGGATGTTCATAACTTCAACGAGTTCACTGTGCGTGCCTACAAAAGAGTGATCAAAAATGAGACTGATCACTACGTTTTCTGGGATGAAGCTTATCAGTTTTTACTGTCAGCACGACGAAAACTAGGTCAACAAGACAATCAGTGGACAGTATGT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAATTTTGAAGCAAATTATCAGTCGGCTCAAAATCGGCTCGTTGGAAAGTATGCTCTAATCACAAGTTTACAAATAATTCTATACTTCAGGATGTTCATAACTTCAACGAGTTCACTGTGCGTGCCTACAAAAGAGTGATCAAAAATGAGACYGATCACTACGTTTTCTGGGATGAAGCTTATCAGTTTTTACTGTCAGCACGACGAAAACTAGGTCAACAAGACAATCAGTGGACAGTATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21924</snp_id>
        <super_contig>c013301088.Contig1</super_contig>
        <contig_pos>190342</contig_pos>
        <strand>+</strand>
        <context>AAGCAGGTGG[A/G]AGAGCACAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCACACCAAATTGAATATGATTACTGTGGAGGAGTTCAAGAAGCAGGTGG</left_flank>
        <right_flank>AGAGCACAATGTCGACAGATTCAAAATCACAGTAAGTCAAAAAGGGTGTT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTATCCGGGTGCGTGAAAAAATGCCTGCCTGGACCACGATACAATTTAATTTTTATCAATTTTTATCGAAGGTTGTAAAGCTTGTCTATCATCTGGGTTTTTTGCCCACATTTTCAATTTTGAAGCAAATTATCAGTCGGCTCAAAATCGGCTCGTTGGAAAGTATGCTCTAATCACAAGTTTACAAATAATTCTATACTTCAGGATGTTCATAACTTCAACGAGTTCACTGTGCGTGCCTACAAAAGAGTGATCAAAAATGAGACTGATCACTACGTTTTCTGGGATGAAGCTTATCAGTTTTTACTGTCAGCACGACGAAAACTAGGTCAACAAGACAATCAGTGGACAGTATGTCAGCAACGTGAGCCGGAGAATAGTCGAGTTTTGTTGGAATGATCATGCGAATTTTAGGTCTCCATAACAAAAATGTGGAAAAAATGACGGAGCACACCAAATTGAATATGATTACTGTGGAGGAGTTCAAGAAGCAGGTGGGAGAGCACAATGTCGACAGATTCAAAATCACAGTAAGTCAAAAAGGGTGTTTGTGACGCTGATTTTGGATTGCCTTCAGATCGTACCTGATGCTATTCAAATGGCGACCACACAAATTGCTATCGACGATCCATGCGCCGTTGTCTACACGTTCGTCTCCACTGTGAAAGTAATGGATACTAGCCAAGCGGTGCTGCGCATTGTTTTAGATGCAATTTCTGGAATCGATTGGAGAGAAGTGAATCTCTTTTCTGATCCCAACTTCGCCGATTTCGATGATACAATGCACCGTACTTTGTACTCCGTGACGAACTGCTCAGATGTGAGTTCAGACAAGTTTTGATTCCAATTTACGGGTTTCTTTTTTTAGGGTAAAATGATTGCCTGCGAAACGTTTGAAATTTACTTTCGAGCCATGAGGACGATTCGTCATTGGGAATTTCTGCTGAAGGCCGATTTCGATTACTTGCATAAGGGCATGCCATTTGACGCATTGATTCC</canonical>
            <polymorphic>AGTATCCGGGTGCGTGAAAAAATGCCTGCCTGGACCACGATACAATTTAATTTTTATCAATTTTTATCGAAGGTTGTAAAGCTTGTCTATCATCTGGGTTTTTTGCCCACATTTTCAATTTTGAAGCAAATTATCAGTCGGCTCAAAATCGGCTCGTTGGAAAGTATGCTCTAATCACAAGTTTACAAATAATTCTATACTTCAGGATGTTCATAACTTCAACGAGTTCACTGTGCGTGCCTACAAAAGAGTGATCAAAAATGAGACTGATCACTACGTTTTCTGGGATGAAGCTTATCAGTTTTTACTGTCAGCACGACGAAAACTAGGTCAACAAGACAATCAGTGGACAGTATGTCAGCAACGTGAGCCGGAGAATAGTCGAGTTTTGTTGGAATGATCATGCGAATTTTAGGTCTCCATAACAAAAATGTGGAAAAAATGACGGAGCACACCAAATTGAATATGATTACTGTGGAGGAGTTCAAGAAGCAGGTGGRAGAGCACAATGTCGACAGATTCAAAATCACAGTAAGTCAAAAAGGGTGTTTGTGACGCTGATTTTGGATTGCCTTCAGATCGTACCTGATGCTATTCAAATGGCGACCACACAAATTGCTATCGACGATCCATGCGCCGTTGTCTACACGTTCGTCTCCACTGTGAAAGTAATGGATACTAGCCAAGCGGTGCTGCGCATTGTTTTAGATGCAATTTCTGGAATCGATTGGAGAGAAGTGAATCTCTTTTCTGATCCCAACTTCGCCGATTTCGATGATACAATGCACCGTACTTTGTACTCCGTGACGAACTGCTCAGATGTGAGTTCAGACAAGTTTTGATTCCAATTTACGGGTTTCTTTTTTTAGGGTAAAATGATTGCCTGCGAAACGTTTGAAATTTACTTTCGAGCCATGAGGACGATTCGTCATTGGGAATTTCTGCTGAAGGCCGATTTCGATTACTTGCATAAGGGCATGCCATTTGACGCATTGATTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGGTCTCCATAACAAAAATGTG</pcr_primer_p1>
		<pcr_primer_p2>AGTGGAGACGAACGTGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGGTCTCCATAACAAAAATGTGGAAAAAATGACGGAGCACACCAAATTGAATATGATTACTGTGGAGGAGTTCAAGAAGCAGGTGGGAGAGCACAATGTCGACAGATTCAAAATCACAGTAAGTCAAAAAGGGTGTTTGTGACGCTGATTTTGGATTGCCTTCAGATCGTACCTGATGCTATTCAAATGGCGACCACACAAATTGCTATCGACGATCCATGCGCCGTTGTCTACACGTTCGTCTCCACT</canonical_amplicon>
		<polymorphic_amplicon>TAGGTCTCCATAACAAAAATGTGGAAAAAATGACGGAGCACACCAAATTGAATATGATTACTGTGGAGGAGTTCAAGAAGCAGGTGGRAGAGCACAATGTCGACAGATTCAAAATCACAGTAAGTCAAAAAGGGTGTTTGTGACGCTGATTTTGGATTGCCTTCAGATCGTACCTGATGCTATTCAAATGGCGACCACACAAATTGCTATCGACGATCCATGCGCCGTTGTCTACACGTTCGTCTCCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21925</snp_id>
        <super_contig>c013400821.Contig4</super_contig>
        <contig_pos>50855</contig_pos>
        <strand>+</strand>
        <context>AAACATTTCC[C/T]GTCGCTCCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACGTCAAAATACATACCGTAACTCCAGAAAAACACTCTGAAACATTTCC</left_flank>
        <right_flank>GTCGCTCCTTCTTCTCGATCAGTTAAAAAACTACTCGTATTCGTAAGGCC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCTTTTTAAAACTATTCCGTTTGACGTAACTAGGCGGTTACTATAAATCCATCAAAAATAGAAAAAAAAACAACCAAAGTTTATGGCATGTGTGTCTGGGGTTTAGGATCATAAATAGAATTGGAGAATCTCTAGGGTCTTGAAGTTTTATCAAGTTTTCTGGGAATTTGAAGATAATGAGTTTTGGTGGTTTTTAGAGCGATTTGATCAGTTTTAATACTACAGTCTCATATTTGTAAGGCCAATGAAACAGTAATTTTTGAAAATTGACTTCAAAAATGGGGCACATGAAAAAAATAATTTTGCACAAATTCAGTTCACATAGTCCCCTCGAGTAGTTGGACTTGTAGATGCTGGCGGAGGTGCTTCGTCGCTACCGACTGAGCTACTGTGGCTCAAGCTGCGCGGCCGACCGATATCGTGCGAACACTAATCACTGTACACTGTCACGTCAAAATACATACCGTAACTCCAGAAAAACACTCTGAAACATTTCCTGTCGCTCCTTCTTCTCGATCAGTTAAAAAACTACTCGTATTCGTAAGGCCAATGTAACAGTAATATTAAAAATGTGATTTTGAAAAAAAATCAGAGTTCATAAAATTCCAAAAGATTTCAAAAATATTATCAGATATCAAAGTTCTGGATATTAATTGTCGGTTCAGGGGTAGAAGAGTCGTAATTTTTCTTTGGGGACCAGGAAAACTTGTTCGAATATCTCGGAAATTACAGTTTTCAATGGAAAATTTGAGAATTAAGATTTCCGAAATTTATTCCTAAAAATTGGGCTGATTGTGAATAAGACGGAGACTGGGCAACAACATGTTGGGTAACAAGCAGGGTTGGGATTTTACGTTTACGGTTTTTCCGGATTTTACGGCATTTCGAGACAACCACAAAGTTTTACAGACCTCCGTAAAACTGTATCCGTAAAATCCATAAAAAACCGTAAAATTAGCAAAATGATTGTTTTTGACTAGCAAAACATATTTTTTTCG</canonical>
            <polymorphic>TCTCTTTTTAAAACTATTCCGTTTGACGTAACTAGGCGGTTACTATAAATCCATCAAAAATAGAAAAAAAAACAACCAAAGTTTATGGCATGTGTGTCTGGGGTTTAGGATCATAAATAGAATTGGAGAATCTCTAGGGTCTTGAAGTTTTATCAAGTTTTCTGGGAATTTGAAGATAATGAGTTTTGGTGGTTTTTAGAGCGATTTGATCAGTTTTAATACTACAGTCTCATATTTGTAAGGCCAATGAAACAGTAATTTTTGAAAATTGACTTCAAAAATGGGGCACATGAAAAAAATAATTTTGCACAAATTCAGTTCACATAGTCCCCTCGAGTAGTTGGACTTGTAGATGCTGGCGGAGGTGCTTCGTCGCTACCGACTGAGCTACTGTGGCTCAAGCTGCGCGGCCGACCGATATCGTGCGAACACTAATCACTGTACACTGTCACGTCAAAATACATACCGTAACTCCAGAAAAACACTCTGAAACATTTCCYGTCGCTCCTTCTTCTCGATCAGTTAAAAAACTACTCGTATTCGTAAGGCCAATGTAACAGTAATATTAAAAATGTGATTTTGAAAAAAAATCAGAGTTCATAAAATTCCAAAAGATTTCAAAAATATTATCAGATATCAAAGTTCTGGATATTAATTGTCGGTTCAGGGGTAGAAGAGTCGTAATTTTTCTTTGGGGACCAGGAAAACTTGTTCGAATATCTCGGAAATTACAGTTTTCAATGGAAAATTTGAGAATTAAGATTTCCGAAATTTATTCCTAAAAATTGGGCTGATTGTGAATAAGACGGAGACTGGGCAACAACATGTTGGGTAACAAGCAGGGTTGGGATTTTACGTTTACGGTTTTTCCGGATTTTACGGCATTTCGAGACAACCACAAAGTTTTACAGACCTCCGTAAAACTGTATCCGTAAAATCCATAAAAAACCGTAAAATTAGCAAAATGATTGTTTTTGACTAGCAAAACATATTTTTTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAAATTGACTTCAAAAATG</pcr_primer_p1>
		<pcr_primer_p2>GTTACATTGGCCTTACGAATAC</pcr_primer_p2>
		<pcr_amplicon_size>298</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAAATTGACTTCAAAAATGGGGCACATGAAAAAAATAATTTTGCACAAATTCAGTTCACATAGTCCCCTCGAGTAGTTGGACTTGTAGATGCTGGCGGAGGTGCTTCGTCGCTACCGACTGAGCTACTGTGGCTCAAGCTGCGCGGCCGACCGATATCGTGCGAACACTAATCACTGTACACTGTCACGTCAAAATACATACCGTAACTCCAGAAAAACACTCTGAAACATTTCCTGTCGCTCCTTCTTCTCGATCAGTTAAAAAACTACTCGTATTCGTAAGGCCAATGTAAC</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAAATTGACTTCAAAAATGGGGCACATGAAAAAAATAATTTTGCACAAATTCAGTTCACATAGTCCCCTCGAGTAGTTGGACTTGTAGATGCTGGCGGAGGTGCTTCGTCGCTACCGACTGAGCTACTGTGGCTCAAGCTGCGCGGCCGACCGATATCGTGCGAACACTAATCACTGTACACTGTCACGTCAAAATACATACCGTAACTCCAGAAAAACACTCTGAAACATTTCCYGTCGCTCCTTCTTCTCGATCAGTTAAAAAACTACTCGTATTCGTAAGGCCAATGTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21926</snp_id>
        <super_contig>c013400821.Contig4</super_contig>
        <contig_pos>50929</contig_pos>
        <strand></strand>
        <context>TATTAAAAAT[G/A]RGATTTTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAAAAAACTACTCGTATTCGTAAGGCCAATGTAACAGTAATATTAAAAAT</left_flank>
        <right_flank>TGATTTTGAAAAAAAATCAGAGTTCATAAAATTCCAAAAGATTTCAAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCAAAGTTTATGGCATGTGTGTCTGGGGTTTAGGATCATAAATAGAATTGGAGAATCTCTAGGGTCTTGAAGTTTTATCAAGTTTTCTGGGAATTTGAAGATAATGAGTTTTGGTGGTTTTTAGAGCGATTTGATCAGTTTTAATACTACAGTCTCATATTTGTAAGGCCAATGAAACAGTAATTTTTGAAAATTGACTTCAAAAATGGGGCACATGAAAAAAATAATTTTGCACAAATTCAGTTCACATAGTCCCCTCGAGTAGTTGGACTTGTAGATGCTGGCGGAGGTGCTTCGTCGCTACCGACTGAGCTACTGTGGCTCAAGCTGCGCGGCCGACCGATATCGTGCGAACACTAATCACTGTACACTGTCACGTCAAAATACATACCGTAACTCCAGAAAAACACTCTGAAACATTTCCTGTCGCTCCTTCTTCTCGATCAGTTAAAAAACTACTCGTATTCGTAAGGCCAATGTAACAGTAATATTAAAAATGTGATTTTGAAAAAAAATCAGAGTTCATAAAATTCCAAAAGATTTCAAAAATATTATCAGATATCAAAGTTCTGGATATTAATTGTCGGTTCAGGGGTAGAAGAGTCGTAATTTTTCTTTGGGGACCAGGAAAACTTGTTCGAATATCTCGGAAATTACAGTTTTCAATGGAAAATTTGAGAATTAAGATTTCCGAAATTTATTCCTAAAAATTGGGCTGATTGTGAATAAGACGGAGACTGGGCAACAACATGTTGGGTAACAAGCAGGGTTGGGATTTTACGTTTACGGTTTTTCCGGATTTTACGGCATTTCGAGACAACCACAAAGTTTTACAGACCTCCGTAAAACTGTATCCGTAAAATCCATAAAAAACCGTAAAATTAGCAAAATGATTGTTTTTGACTAGCAAAACATATTTTTTTCGGAGTTTGGTGTTATTTCAAATATGTAACATTGCTAAATTTCAATGCCTAAATCCGAAAACTGTGTATTCTCAAA</canonical>
            <polymorphic>ACCAAAGTTTATGGCATGTGTGTCTGGGGTTTAGGATCATAAATAGAATTGGAGAATCTCTAGGGTCTTGAAGTTTTATCAAGTTTTCTGGGAATTTGAAGATAATGAGTTTTGGTGGTTTTTAGAGCGATTTGATCAGTTTTAATACTACAGTCTCATATTTGTAAGGCCAATGAAACAGTAATTTTTGAAAATTGACTTCAAAAATGGGGCACATGAAAAAAATAATTTTGCACAAATTCAGTTCACATAGTCCCCTCGAGTAGTTGGACTTGTAGATGCTGGCGGAGGTGCTTCGTCGCTACCGACTGAGCTACTGTGGCTCAAGCTGCGCGGCCGACCGATATCGTGCGAACACTAATCACTGTACACTGTCACGTCAAAATACATACCGTAACTCCAGAAAAACACTCTGAAACATTTCCTGTCGCTCCTTCTTCTCGATCAGTTAAAAAACTACTCGTATTCGTAAGGCCAATGTAACAGTAATATTAAAAATRTGATTTTGAAAAAAAATCAGAGTTCATAAAATTCCAAAAGATTTCAAAAATATTATCAGATATCAAAGTTCTGGATATTAATTGTCGGTTCAGGGGTAGAAGAGTCGTAATTTTTCTTTGGGGACCAGGAAAACTTGTTCGAATATCTCGGAAATTACAGTTTTCAATGGAAAATTTGAGAATTAAGATTTCCGAAATTTATTCCTAAAAATTGGGCTGATTGTGAATAAGACGGAGACTGGGCAACAACATGTTGGGTAACAAGCAGGGTTGGGATTTTACGTTTACGGTTTTTCCGGATTTTACGGCATTTCGAGACAACCACAAAGTTTTACAGACCTCCGTAAAACTGTATCCGTAAAATCCATAAAAAACCGTAAAATTAGCAAAATGATTGTTTTTGACTAGCAAAACATATTTTTTTCGGAGTTTGGTGTTATTTCAAATATGTAACATTGCTAAATTTCAATGCCTAAATCCGAAAACTGTGTATTCTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>223 112 99 97 95 92 54 45 33 30 28 21 20 13 10 7 7 6 6 2</canonical_bands>
                <polymorphic_bands>315 112 99 97 95 54 45 33 30 28 21 20 13 10 7 7 6 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTCTTCTCGATCAGTTAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGAAAACTGTAATTTCCGAGATA</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>CCTTCTTCTCGATCAGTTAAAAAACTACTCGTATTCGTAAGGCCAATGTAACAGTAATATTAAAAATGTGATTTTGAAAAAAAATCAGAGTTCATAAAATTCCAAAAGATTTCAAAAATATTATCAGATATCAAAGTTCTGGATATTAATTGTCGGTTCAGGGGTAGAAGAGTCGTAATTTTTCTTTGGGGACCAGGAAAACTTGTTCGAATATCTCGGAAATTACAGTTTTCA</canonical_amplicon>
		<polymorphic_amplicon>CCTTCTTCTCGATCAGTTAAAAAACTACTCGTATTCGTAAGGCCAATGTAACAGTAATATTAAAAATRTGATTTTGAAAAAAAATCAGAGTTCATAAAATTCCAAAAGATTTCAAAAATATTATCAGATATCAAAGTTCTGGATATTAATTGTCGGTTCAGGGGTAGAAGAGTCGTAATTTTTCTTTGGGGACCAGGAAAACTTGTTCGAATATCTCGGAAATTACAGTTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21927</snp_id>
        <super_contig>c013400821.Contig4</super_contig>
        <contig_pos>51011</contig_pos>
        <strand>+</strand>
        <context>TGGATATTAA[C/T]TGTCGGTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCAAAAGATTTCAAAAATATTATCAGATATCAAAGTTCTGGATATTAA</left_flank>
        <right_flank>TGTCGGTTCAGGGGTAGAAGAGTCGTAATTTTTCTTTGGGGACCAGGAAA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTCTGGGAATTTGAAGATAATGAGTTTTGGTGGTTTTTAGAGCGATTTGATCAGTTTTAATACTACAGTCTCATATTTGTAAGGCCAATGAAACAGTAATTTTTGAAAATTGACTTCAAAAATGGGGCACATGAAAAAAATAATTTTGCACAAATTCAGTTCACATAGTCCCCTCGAGTAGTTGGACTTGTAGATGCTGGCGGAGGTGCTTCGTCGCTACCGACTGAGCTACTGTGGCTCAAGCTGCGCGGCCGACCGATATCGTGCGAACACTAATCACTGTACACTGTCACGTCAAAATACATACCGTAACTCCAGAAAAACACTCTGAAACATTTCCTGTCGCTCCTTCTTCTCGATCAGTTAAAAAACTACTCGTATTCGTAAGGCCAATGTAACAGTAATATTAAAAATGTGATTTTGAAAAAAAATCAGAGTTCATAAAATTCCAAAAGATTTCAAAAATATTATCAGATATCAAAGTTCTGGATATTAATTGTCGGTTCAGGGGTAGAAGAGTCGTAATTTTTCTTTGGGGACCAGGAAAACTTGTTCGAATATCTCGGAAATTACAGTTTTCAATGGAAAATTTGAGAATTAAGATTTCCGAAATTTATTCCTAAAAATTGGGCTGATTGTGAATAAGACGGAGACTGGGCAACAACATGTTGGGTAACAAGCAGGGTTGGGATTTTACGTTTACGGTTTTTCCGGATTTTACGGCATTTCGAGACAACCACAAAGTTTTACAGACCTCCGTAAAACTGTATCCGTAAAATCCATAAAAAACCGTAAAATTAGCAAAATGATTGTTTTTGACTAGCAAAACATATTTTTTTCGGAGTTTGGTGTTATTTCAAATATGTAACATTGCTAAATTTCAATGCCTAAATCCGAAAACTGTGTATTCTCAAACTTTTATTATCGAAATTTTGGAAAAAAATGCCGAAAAATGCATGTGAACGTTCGATCAATGCTCAAAAGTCGTTCTGAAGAG</canonical>
            <polymorphic>GTTTTCTGGGAATTTGAAGATAATGAGTTTTGGTGGTTTTTAGAGCGATTTGATCAGTTTTAATACTACAGTCTCATATTTGTAAGGCCAATGAAACAGTAATTTTTGAAAATTGACTTCAAAAATGGGGCACATGAAAAAAATAATTTTGCACAAATTCAGTTCACATAGTCCCCTCGAGTAGTTGGACTTGTAGATGCTGGCGGAGGTGCTTCGTCGCTACCGACTGAGCTACTGTGGCTCAAGCTGCGCGGCCGACCGATATCGTGCGAACACTAATCACTGTACACTGTCACGTCAAAATACATACCGTAACTCCAGAAAAACACTCTGAAACATTTCCTGTCGCTCCTTCTTCTCGATCAGTTAAAAAACTACTCGTATTCGTAAGGCCAATGTAACAGTAATATTAAAAATGTGATTTTGAAAAAAAATCAGAGTTCATAAAATTCCAAAAGATTTCAAAAATATTATCAGATATCAAAGTTCTGGATATTAAYTGTCGGTTCAGGGGTAGAAGAGTCGTAATTTTTCTTTGGGGACCAGGAAAACTTGTTCGAATATCTCGGAAATTACAGTTTTCAATGGAAAATTTGAGAATTAAGATTTCCGAAATTTATTCCTAAAAATTGGGCTGATTGTGAATAAGACGGAGACTGGGCAACAACATGTTGGGTAACAAGCAGGGTTGGGATTTTACGTTTACGGTTTTTCCGGATTTTACGGCATTTCGAGACAACCACAAAGTTTTACAGACCTCCGTAAAACTGTATCCGTAAAATCCATAAAAAACCGTAAAATTAGCAAAATGATTGTTTTTGACTAGCAAAACATATTTTTTTCGGAGTTTGGTGTTATTTCAAATATGTAACATTGCTAAATTTCAATGCCTAAATCCGAAAACTGTGTATTCTCAAACTTTTATTATCGAAATTTTGGAAAAAAATGCCGAAAAATGCATGTGAACGTTCGATCAATGCTCAAAAGTCGTTCTGAAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>292 171 90 81 69 52 50 44 34 29 20 15 14 11 10 10 8</canonical_bands>
                <polymorphic_bands>292 171 90 81 79 69 52 44 34 20 15 14 11 10 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTCTTCTCGATCAGTTAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGAAAACTGTAATTTCCGAGATA</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>CCTTCTTCTCGATCAGTTAAAAAACTACTCGTATTCGTAAGGCCAATGTAACAGTAATATTAAAAATGTGATTTTGAAAAAAAATCAGAGTTCATAAAATTCCAAAAGATTTCAAAAATATTATCAGATATCAAAGTTCTGGATATTAATTGTCGGTTCAGGGGTAGAAGAGTCGTAATTTTTCTTTGGGGACCAGGAAAACTTGTTCGAATATCTCGGAAATTACAGTTTTCA</canonical_amplicon>
		<polymorphic_amplicon>CCTTCTTCTCGATCAGTTAAAAAACTACTCGTATTCGTAAGGCCAATGTAACAGTAATATTAAAAATGTGATTTTGAAAAAAAATCAGAGTTCATAAAATTCCAAAAGATTTCAAAAATATTATCAGATATCAAAGTTCTGGATATTAAYTGTCGGTTCAGGGGTAGAAGAGTCGTAATTTTTCTTTGGGGACCAGGAAAACTTGTTCGAATATCTCGGAAATTACAGTTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21928</snp_id>
        <super_contig>c013400821.Contig4</super_contig>
        <contig_pos>51115</contig_pos>
        <strand>+</strand>
        <context>TTGAGAATTA[A/C]GATTTCCGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGTTCGAATATCTCGGAAATTACAGTTTTCAATGGAAAATTTGAGAATTA</left_flank>
        <right_flank>GATTTCCGAAATTTATTCCTAAAAATTGGGCTGATTGTGAATAAGACGGA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAAAATTGACTTCAAAAATGGGGCACATGAAAAAAATAATTTTGCACAAATTCAGTTCACATAGTCCCCTCGAGTAGTTGGACTTGTAGATGCTGGCGGAGGTGCTTCGTCGCTACCGACTGAGCTACTGTGGCTCAAGCTGCGCGGCCGACCGATATCGTGCGAACACTAATCACTGTACACTGTCACGTCAAAATACATACCGTAACTCCAGAAAAACACTCTGAAACATTTCCTGTCGCTCCTTCTTCTCGATCAGTTAAAAAACTACTCGTATTCGTAAGGCCAATGTAACAGTAATATTAAAAATGTGATTTTGAAAAAAAATCAGAGTTCATAAAATTCCAAAAGATTTCAAAAATATTATCAGATATCAAAGTTCTGGATATTAATTGTCGGTTCAGGGGTAGAAGAGTCGTAATTTTTCTTTGGGGACCAGGAAAACTTGTTCGAATATCTCGGAAATTACAGTTTTCAATGGAAAATTTGAGAATTAAGATTTCCGAAATTTATTCCTAAAAATTGGGCTGATTGTGAATAAGACGGAGACTGGGCAACAACATGTTGGGTAACAAGCAGGGTTGGGATTTTACGTTTACGGTTTTTCCGGATTTTACGGCATTTCGAGACAACCACAAAGTTTTACAGACCTCCGTAAAACTGTATCCGTAAAATCCATAAAAAACCGTAAAATTAGCAAAATGATTGTTTTTGACTAGCAAAACATATTTTTTTCGGAGTTTGGTGTTATTTCAAATATGTAACATTGCTAAATTTCAATGCCTAAATCCGAAAACTGTGTATTCTCAAACTTTTATTATCGAAATTTTGGAAAAAAATGCCGAAAAATGCATGTGAACGTTCGATCAATGCTCAAAAGTCGTTCTGAAGAGACGAGGAGCTCAAAAAAAATACCAAAAAATCGATATTGTATTTCTGACGACATTTTTTGAGAAATTTGAAATTTTTTATGATAAAAATATAAAAATACATAATT</canonical>
            <polymorphic>TTTGAAAATTGACTTCAAAAATGGGGCACATGAAAAAAATAATTTTGCACAAATTCAGTTCACATAGTCCCCTCGAGTAGTTGGACTTGTAGATGCTGGCGGAGGTGCTTCGTCGCTACCGACTGAGCTACTGTGGCTCAAGCTGCGCGGCCGACCGATATCGTGCGAACACTAATCACTGTACACTGTCACGTCAAAATACATACCGTAACTCCAGAAAAACACTCTGAAACATTTCCTGTCGCTCCTTCTTCTCGATCAGTTAAAAAACTACTCGTATTCGTAAGGCCAATGTAACAGTAATATTAAAAATGTGATTTTGAAAAAAAATCAGAGTTCATAAAATTCCAAAAGATTTCAAAAATATTATCAGATATCAAAGTTCTGGATATTAATTGTCGGTTCAGGGGTAGAAGAGTCGTAATTTTTCTTTGGGGACCAGGAAAACTTGTTCGAATATCTCGGAAATTACAGTTTTCAATGGAAAATTTGAGAATTAMGATTTCCGAAATTTATTCCTAAAAATTGGGCTGATTGTGAATAAGACGGAGACTGGGCAACAACATGTTGGGTAACAAGCAGGGTTGGGATTTTACGTTTACGGTTTTTCCGGATTTTACGGCATTTCGAGACAACCACAAAGTTTTACAGACCTCCGTAAAACTGTATCCGTAAAATCCATAAAAAACCGTAAAATTAGCAAAATGATTGTTTTTGACTAGCAAAACATATTTTTTTCGGAGTTTGGTGTTATTTCAAATATGTAACATTGCTAAATTTCAATGCCTAAATCCGAAAACTGTGTATTCTCAAACTTTTATTATCGAAATTTTGGAAAAAAATGCCGAAAAATGCATGTGAACGTTCGATCAATGCTCAAAAGTCGTTCTGAAGAGACGAGGAGCTCAAAAAAAATACCAAAAAATCGATATTGTATTTCTGACGACATTTTTTGAGAAATTTGAAATTTTTTATGATAAAAATATAAAAATACATAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>503 263 105 86 43</canonical_bands>
                <polymorphic_bands>608 263 86 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGTAGAAGAGTCGTAATTTTTC</pcr_primer_p1>
		<pcr_primer_p2>GTCTGTAAAACTTTGTGGTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGGTAGAAGAGTCGTAATTTTTCTTTGGGGACCAGGAAAACTTGTTCGAATATCTCGGAAATTACAGTTTTCAATGGAAAATTTGAGAATTAAGATTTCCGAAATTTATTCCTAAAAATTGGGCTGATTGTGAATAAGACGGAGACTGGGCAACAACATGTTGGGTAACAAGCAGGGTTGGGATTTTACGTTTACGGTTTTTCCGGATTTTACGGCATTTCGAGACAACCACAAAGTTTTACAGAC</canonical_amplicon>
		<polymorphic_amplicon>GGGTAGAAGAGTCGTAATTTTTCTTTGGGGACCAGGAAAACTTGTTCGAATATCTCGGAAATTACAGTTTTCAATGGAAAATTTGAGAATTAMGATTTCCGAAATTTATTCCTAAAAATTGGGCTGATTGTGAATAAGACGGAGACTGGGCAACAACATGTTGGGTAACAAGCAGGGTTGGGATTTTACGTTTACGGTTTTTCCGGATTTTACGGCATTTCGAGACAACCACAAAGTTTTACAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21929</snp_id>
        <super_contig>c013400821.Contig4</super_contig>
        <contig_pos>52413</contig_pos>
        <strand>+</strand>
        <context>CAGACTCTAC[G/T]TGACATTCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCTACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTAC</left_flank>
        <right_flank>TGACATTCCTGTGGGATCTTCCGACTACTGTGAATCTCGAACCTTCGGTT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCACTTCCTTGTTTTCTGATCCCGCCCGTTTCGTGCCATTGATAAAGAAACAAAACATATTCAAACGAGAATAGACAAAAATTGAGTGGGTTTGGACATTGAGAAAAAAAAGGAGAGGGACCAATAAAAAATTGATGAAAAATGTGAAATGAGCATCCCATGGAGTCTTCCCCCTTTTGCATAGAGCATTCATAAGCTCATCATCAAAAAAGTGGAGTATTTCGGAAAATAATTACAGCCTTATTGAGCAGAAAAAAGAAGAAAAAGGAACGAAGAAAAAGGAGAAAGAAGGTTACGTCACAAAGTGAAAAAAGAAGAGAAAAACGAGCAAATTCGAAATGGCCGGAGGCGCCTAGATTAGTGCGTTCCTATAGGGTTAAAATTGACACAAGTTTGTGTGTATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACCTACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTACTTGACATTCCTGTGGGATCTTCCGACTACTGTGAATCTCGAACCTTCGGTTGAGGTCGTAAATATCAATTGGAGCCTCTGATGAGAGTGTATGAGAGATGAAGAGGAGCAGAGAGCGGTCAAGTTTTTGTGGAATGAAGATACAACATCGTTTTTAGTGTAAATGAGTTGACAAGTGGCATGAAGAGGTGGAAGGAGAAAAGAGCAAGAGTTCGTTTTTCAGAAAATCCTTCCTTTCCTTAGCTTCCTAGCGGTCAGTTGTATTACTTGCTTGTTTTTAATTTTCGGTTCAAAGTACCGTAAACCTGTAATAAAAGGGCCTCCATATTGCCAACTTTGAGCTGATTTTTCTTGGCTCCGATGCAAGATATCAAAATTTGGCCAACTGATGAAATGTTTATGAGATTATGATAATCAACTTGTCAGTTTACAACTTTTTTATATCGTGGGCAGGAACCGAAATAAATTATCTCAAAGTCATATTGAAGGGGTCCTCCTCAGC</canonical>
            <polymorphic>TATCACTTCCTTGTTTTCTGATCCCGCCCGTTTCGTGCCATTGATAAAGAAACAAAACATATTCAAACGAGAATAGACAAAAATTGAGTGGGTTTGGACATTGAGAAAAAAAAGGAGAGGGACCAATAAAAAATTGATGAAAAATGTGAAATGAGCATCCCATGGAGTCTTCCCCCTTTTGCATAGAGCATTCATAAGCTCATCATCAAAAAAGTGGAGTATTTCGGAAAATAATTACAGCCTTATTGAGCAGAAAAAAGAAGAAAAAGGAACGAAGAAAAAGGAGAAAGAAGGTTACGTCACAAAGTGAAAAAAGAAGAGAAAAACGAGCAAATTCGAAATGGCCGGAGGCGCCTAGATTAGTGCGTTCCTATAGGGTTAAAATTGACACAAGTTTGTGTGTATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACCTACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTACKTGACATTCCTGTGGGATCTTCCGACTACTGTGAATCTCGAACCTTCGGTTGAGGTCGTAAATATCAATTGGAGCCTCTGATGAGAGTGTATGAGAGATGAAGAGGAGCAGAGAGCGGTCAAGTTTTTGTGGAATGAAGATACAACATCGTTTTTAGTGTAAATGAGTTGACAAGTGGCATGAAGAGGTGGAAGGAGAAAAGAGCAAGAGTTCGTTTTTCAGAAAATCCTTCCTTTCCTTAGCTTCCTAGCGGTCAGTTGTATTACTTGCTTGTTTTTAATTTTCGGTTCAAAGTACCGTAAACCTGTAATAAAAGGGCCTCCATATTGCCAACTTTGAGCTGATTTTTCTTGGCTCCGATGCAAGATATCAAAATTTGGCCAACTGATGAAATGTTTATGAGATTATGATAATCAACTTGTCAGTTTACAACTTTTTTATATCGTGGGCAGGAACCGAAATAAATTATCTCAAAGTCATATTGAAGGGGTCCTCCTCAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACAAATTTCTAAGGACCTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAAACGATGTTGTATCTTCATTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACCTACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTACTTGACATTCCTGTGGGATCTTCCGACTACTGTGAATCTCGAACCTTCGGTTGAGGTCGTAAATATCAATTGGAGCCTCTGATGAGAGTGTATGAGAGATGAAGAGGAGCAGAGAGCGGTCAAGTTTTTGTGGAATGAAGATACAACATCGTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACCTACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTACKTGACATTCCTGTGGGATCTTCCGACTACTGTGAATCTCGAACCTTCGGTTGAGGTCGTAAATATCAATTGGAGCCTCTGATGAGAGTGTATGAGAGATGAAGAGGAGCAGAGAGCGGTCAAGTTTTTGTGGAATGAAGATACAACATCGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21930</snp_id>
        <super_contig>c013400821.Contig4</super_contig>
        <contig_pos>52365</contig_pos>
        <strand></strand>
        <context>CATTTTGACM[T/C]ACTATTTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACC</left_flank>
        <right_flank>ACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTACTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTTCCCATTTGCCCATTATTTTCCATATTAGCTCCGCCCACTTTCTATCACTTCCTTGTTTTCTGATCCCGCCCGTTTCGTGCCATTGATAAAGAAACAAAACATATTCAAACGAGAATAGACAAAAATTGAGTGGGTTTGGACATTGAGAAAAAAAAGGAGAGGGACCAATAAAAAATTGATGAAAAATGTGAAATGAGCATCCCATGGAGTCTTCCCCCTTTTGCATAGAGCATTCATAAGCTCATCATCAAAAAAGTGGAGTATTTCGGAAAATAATTACAGCCTTATTGAGCAGAAAAAAGAAGAAAAAGGAACGAAGAAAAAGGAGAAAGAAGGTTACGTCACAAAGTGAAAAAAGAAGAGAAAAACGAGCAAATTCGAAATGGCCGGAGGCGCCTAGATTAGTGCGTTCCTATAGGGTTAAAATTGACACAAGTTTGTGTGTATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACCTACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTACTTGACATTCCTGTGGGATCTTCCGACTACTGTGAATCTCGAACCTTCGGTTGAGGTCGTAAATATCAATTGGAGCCTCTGATGAGAGTGTATGAGAGATGAAGAGGAGCAGAGAGCGGTCAAGTTTTTGTGGAATGAAGATACAACATCGTTTTTAGTGTAAATGAGTTGACAAGTGGCATGAAGAGGTGGAAGGAGAAAAGAGCAAGAGTTCGTTTTTCAGAAAATCCTTCCTTTCCTTAGCTTCCTAGCGGTCAGTTGTATTACTTGCTTGTTTTTAATTTTCGGTTCAAAGTACCGTAAACCTGTAATAAAAGGGCCTCCATATTGCCAACTTTGAGCTGATTTTTCTTGGCTCCGATGCAAGATATCAAAATTTGGCCAACTGATGAAATGTTTATGAGATTATGATAATCAACTTGTCAGTTTACAACTTTTTTATATCGTGGGCAGG</canonical>
            <polymorphic>ATTCTTCCCATTTGCCCATTATTTTCCATATTAGCTCCGCCCACTTTCTATCACTTCCTTGTTTTCTGATCCCGCCCGTTTCGTGCCATTGATAAAGAAACAAAACATATTCAAACGAGAATAGACAAAAATTGAGTGGGTTTGGACATTGAGAAAAAAAAGGAGAGGGACCAATAAAAAATTGATGAAAAATGTGAAATGAGCATCCCATGGAGTCTTCCCCCTTTTGCATAGAGCATTCATAAGCTCATCATCAAAAAAGTGGAGTATTTCGGAAAATAATTACAGCCTTATTGAGCAGAAAAAAGAAGAAAAAGGAACGAAGAAAAAGGAGAAAGAAGGTTACGTCACAAAGTGAAAAAAGAAGAGAAAAACGAGCAAATTCGAAATGGCCGGAGGCGCCTAGATTAGTGCGTTCCTATAGGGTTAAAATTGACACAAGTTTGTGTGTATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACCYACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTACTTGACATTCCTGTGGGATCTTCCGACTACTGTGAATCTCGAACCTTCGGTTGAGGTCGTAAATATCAATTGGAGCCTCTGATGAGAGTGTATGAGAGATGAAGAGGAGCAGAGAGCGGTCAAGTTTTTGTGGAATGAAGATACAACATCGTTTTTAGTGTAAATGAGTTGACAAGTGGCATGAAGAGGTGGAAGGAGAAAAGAGCAAGAGTTCGTTTTTCAGAAAATCCTTCCTTTCCTTAGCTTCCTAGCGGTCAGTTGTATTACTTGCTTGTTTTTAATTTTCGGTTCAAAGTACCGTAAACCTGTAATAAAAGGGCCTCCATATTGCCAACTTTGAGCTGATTTTTCTTGGCTCCGATGCAAGATATCAAAATTTGGCCAACTGATGAAATGTTTATGAGATTATGATAATCAACTTGTCAGTTTACAACTTTTTTATATCGTGGGCAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTAGTGCGTTCCTATAGGGTTA</pcr_primer_p1>
		<pcr_primer_p2>TCCTCTTCATCTCTCATACACTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTAGTGCGTTCCTATAGGGTTAAAATTGACACAAGTTTGTGTGTATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACCTACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTACTTGACATTCCTGTGGGATCTTCCGACTACTGTGAATCTCGAACCTTCGGTTGAGGTCGTAAATATCAATTGGAGCCTCTGATGAGAGTGTATGAGAGATGAAGAGGA</canonical_amplicon>
		<polymorphic_amplicon>ATTAGTGCGTTCCTATAGGGTTAAAATTGACACAAGTTTGTGTGTATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACCYACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTACTTGACATTCCTGTGGGATCTTCCGACTACTGTGAATCTCGAACCTTCGGTTGAGGTCGTAAATATCAATTGGAGCCTCTGATGAGAGTGTATGAGAGATGAAGAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21931</snp_id>
        <super_contig>c013400821.Contig4</super_contig>
        <contig_pos>52364</contig_pos>
        <strand></strand>
        <context>CCATTTTGAC[C/A]YACTATTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TGTATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGAC</left_flank>
        <right_flank>TACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTACTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTCTTCCCATTTGCCCATTATTTTCCATATTAGCTCCGCCCACTTTCTATCACTTCCTTGTTTTCTGATCCCGCCCGTTTCGTGCCATTGATAAAGAAACAAAACATATTCAAACGAGAATAGACAAAAATTGAGTGGGTTTGGACATTGAGAAAAAAAAGGAGAGGGACCAATAAAAAATTGATGAAAAATGTGAAATGAGCATCCCATGGAGTCTTCCCCCTTTTGCATAGAGCATTCATAAGCTCATCATCAAAAAAGTGGAGTATTTCGGAAAATAATTACAGCCTTATTGAGCAGAAAAAAGAAGAAAAAGGAACGAAGAAAAAGGAGAAAGAAGGTTACGTCACAAAGTGAAAAAAGAAGAGAAAAACGAGCAAATTCGAAATGGCCGGAGGCGCCTAGATTAGTGCGTTCCTATAGGGTTAAAATTGACACAAGTTTGTGTGTATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACCTACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTACTTGACATTCCTGTGGGATCTTCCGACTACTGTGAATCTCGAACCTTCGGTTGAGGTCGTAAATATCAATTGGAGCCTCTGATGAGAGTGTATGAGAGATGAAGAGGAGCAGAGAGCGGTCAAGTTTTTGTGGAATGAAGATACAACATCGTTTTTAGTGTAAATGAGTTGACAAGTGGCATGAAGAGGTGGAAGGAGAAAAGAGCAAGAGTTCGTTTTTCAGAAAATCCTTCCTTTCCTTAGCTTCCTAGCGGTCAGTTGTATTACTTGCTTGTTTTTAATTTTCGGTTCAAAGTACCGTAAACCTGTAATAAAAGGGCCTCCATATTGCCAACTTTGAGCTGATTTTTCTTGGCTCCGATGCAAGATATCAAAATTTGGCCAACTGATGAAATGTTTATGAGATTATGATAATCAACTTGTCAGTTTACAACTTTTTTATATCGTGGGCAG</canonical>
            <polymorphic>CATTCTTCCCATTTGCCCATTATTTTCCATATTAGCTCCGCCCACTTTCTATCACTTCCTTGTTTTCTGATCCCGCCCGTTTCGTGCCATTGATAAAGAAACAAAACATATTCAAACGAGAATAGACAAAAATTGAGTGGGTTTGGACATTGAGAAAAAAAAGGAGAGGGACCAATAAAAAATTGATGAAAAATGTGAAATGAGCATCCCATGGAGTCTTCCCCCTTTTGCATAGAGCATTCATAAGCTCATCATCAAAAAAGTGGAGTATTTCGGAAAATAATTACAGCCTTATTGAGCAGAAAAAAGAAGAAAAAGGAACGAAGAAAAAGGAGAAAGAAGGTTACGTCACAAAGTGAAAAAAGAAGAGAAAAACGAGCAAATTCGAAATGGCCGGAGGCGCCTAGATTAGTGCGTTCCTATAGGGTTAAAATTGACACAAGTTTGTGTGTATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACMTACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTACTTGACATTCCTGTGGGATCTTCCGACTACTGTGAATCTCGAACCTTCGGTTGAGGTCGTAAATATCAATTGGAGCCTCTGATGAGAGTGTATGAGAGATGAAGAGGAGCAGAGAGCGGTCAAGTTTTTGTGGAATGAAGATACAACATCGTTTTTAGTGTAAATGAGTTGACAAGTGGCATGAAGAGGTGGAAGGAGAAAAGAGCAAGAGTTCGTTTTTCAGAAAATCCTTCCTTTCCTTAGCTTCCTAGCGGTCAGTTGTATTACTTGCTTGTTTTTAATTTTCGGTTCAAAGTACCGTAAACCTGTAATAAAAGGGCCTCCATATTGCCAACTTTGAGCTGATTTTTCTTGGCTCCGATGCAAGATATCAAAATTTGGCCAACTGATGAAATGTTTATGAGATTATGATAATCAACTTGTCAGTTTACAACTTTTTTATATCGTGGGCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTAGTGCGTTCCTATAGGGTTA</pcr_primer_p1>
		<pcr_primer_p2>TCCTCTTCATCTCTCATACACTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTAGTGCGTTCCTATAGGGTTAAAATTGACACAAGTTTGTGTGTATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACCTACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTACTTGACATTCCTGTGGGATCTTCCGACTACTGTGAATCTCGAACCTTCGGTTGAGGTCGTAAATATCAATTGGAGCCTCTGATGAGAGTGTATGAGAGATGAAGAGGA</canonical_amplicon>
		<polymorphic_amplicon>ATTAGTGCGTTCCTATAGGGTTAAAATTGACACAAGTTTGTGTGTATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACMTACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTACTTGACATTCCTGTGGGATCTTCCGACTACTGTGAATCTCGAACCTTCGGTTGAGGTCGTAAATATCAATTGGAGCCTCTGATGAGAGTGTATGAGAGATGAAGAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21932</snp_id>
        <super_contig>c013400821.Contig4</super_contig>
        <contig_pos>52316</contig_pos>
        <strand>+</strand>
        <context>AGTTTGTMYG[C/T]ATAAACAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCTAGATTAGTGCGTTCCTATAGGGTTAAAATTGACACAAGTTTGTGTG</left_flank>
        <right_flank>ATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACCTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACAATTAAATGCAAAATACTAGGAAAAACCAATCCACTCATACATGCATTCTTCCCATTTGCCCATTATTTTCCATATTAGCTCCGCCCACTTTCTATCACTTCCTTGTTTTCTGATCCCGCCCGTTTCGTGCCATTGATAAAGAAACAAAACATATTCAAACGAGAATAGACAAAAATTGAGTGGGTTTGGACATTGAGAAAAAAAAGGAGAGGGACCAATAAAAAATTGATGAAAAATGTGAAATGAGCATCCCATGGAGTCTTCCCCCTTTTGCATAGAGCATTCATAAGCTCATCATCAAAAAAGTGGAGTATTTCGGAAAATAATTACAGCCTTATTGAGCAGAAAAAAGAAGAAAAAGGAACGAAGAAAAAGGAGAAAGAAGGTTACGTCACAAAGTGAAAAAAGAAGAGAAAAACGAGCAAATTCGAAATGGCCGGAGGCGCCTAGATTAGTGCGTTCCTATAGGGTTAAAATTGACACAAGTTTGTGTGTATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACCTACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTACTTGACATTCCTGTGGGATCTTCCGACTACTGTGAATCTCGAACCTTCGGTTGAGGTCGTAAATATCAATTGGAGCCTCTGATGAGAGTGTATGAGAGATGAAGAGGAGCAGAGAGCGGTCAAGTTTTTGTGGAATGAAGATACAACATCGTTTTTAGTGTAAATGAGTTGACAAGTGGCATGAAGAGGTGGAAGGAGAAAAGAGCAAGAGTTCGTTTTTCAGAAAATCCTTCCTTTCCTTAGCTTCCTAGCGGTCAGTTGTATTACTTGCTTGTTTTTAATTTTCGGTTCAAAGTACCGTAAACCTGTAATAAAAGGGCCTCCATATTGCCAACTTTGAGCTGATTTTTCTTGGCTCCGATGCAAGATATCAAAATTTGGCCAACTGATGAAATGTTTATGAGA</canonical>
            <polymorphic>TAACAATTAAATGCAAAATACTAGGAAAAACCAATCCACTCATACATGCATTCTTCCCATTTGCCCATTATTTTCCATATTAGCTCCGCCCACTTTCTATCACTTCCTTGTTTTCTGATCCCGCCCGTTTCGTGCCATTGATAAAGAAACAAAACATATTCAAACGAGAATAGACAAAAATTGAGTGGGTTTGGACATTGAGAAAAAAAAGGAGAGGGACCAATAAAAAATTGATGAAAAATGTGAAATGAGCATCCCATGGAGTCTTCCCCCTTTTGCATAGAGCATTCATAAGCTCATCATCAAAAAAGTGGAGTATTTCGGAAAATAATTACAGCCTTATTGAGCAGAAAAAAGAAGAAAAAGGAACGAAGAAAAAGGAGAAAGAAGGTTACGTCACAAAGTGAAAAAAGAAGAGAAAAACGAGCAAATTCGAAATGGCCGGAGGCGCCTAGATTAGTGCGTTCCTATAGGGTTAAAATTGACACAAGTTTGTGTGYATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACCTACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTACTTGACATTCCTGTGGGATCTTCCGACTACTGTGAATCTCGAACCTTCGGTTGAGGTCGTAAATATCAATTGGAGCCTCTGATGAGAGTGTATGAGAGATGAAGAGGAGCAGAGAGCGGTCAAGTTTTTGTGGAATGAAGATACAACATCGTTTTTAGTGTAAATGAGTTGACAAGTGGCATGAAGAGGTGGAAGGAGAAAAGAGCAAGAGTTCGTTTTTCAGAAAATCCTTCCTTTCCTTAGCTTCCTAGCGGTCAGTTGTATTACTTGCTTGTTTTTAATTTTCGGTTCAAAGTACCGTAAACCTGTAATAAAAGGGCCTCCATATTGCCAACTTTGAGCTGATTTTTCTTGGCTCCGATGCAAGATATCAAAATTTGGCCAACTGATGAAATGTTTATGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAGGTTACGTCACAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>AGATTCACAGTAGTCGGAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAAGGTTACGTCACAAAGTGAAAAAAGAAGAGAAAAACGAGCAAATTCGAAATGGCCGGAGGCGCCTAGATTAGTGCGTTCCTATAGGGTTAAAATTGACACAAGTTTGTGTGTATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACCTACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTACTTGACATTCCTGTGGGATCTTCCGACTACTGTGAATCT</canonical_amplicon>
		<polymorphic_amplicon>AAGAAGGTTACGTCACAAAGTGAAAAAAGAAGAGAAAAACGAGCAAATTCGAAATGGCCGGAGGCGCCTAGATTAGTGCGTTCCTATAGGGTTAAAATTGACACAAGTTTGTGTGYATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACCTACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTACTTGACATTCCTGTGGGATCTTCCGACTACTGTGAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21978</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>25119</contig_pos>
        <strand>+</strand>
        <context>GAGAGCTTGA[C/T]GTAATTGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGTGCTCTCTTGAGAAGAACGTCGCAAACTGATAATGGAGAGAGCTTGA</left_flank>
        <right_flank>GTAATTGAAAAGGTTAAGAATGAAGGTTTAGGTCAGGTTTTGCACGAAAA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCGTGTTGTTTCAGTTTTGATTCTTTCAACAATTATTGAATGTTTCAGAATTCCAGTAAAAAATGACTGCGAGAAAACGGAAAATCGAGGAAAGAGATAAAAAAGAAGATGTGAAAAAGAAGATATTGTCTCCAGAAGCTCAGAAAAAGATGAATGAGTTTTATGATCAACAGAACGAGCTGCTCCAGAAGTTTGAACAGGATCAGGAGACGATTCAAAAGCCAATTAAGAAAGCGGAGGTATGTTGGAGATTCTAGGTCATGGATTCCTAGGGCAGTAGTTTTATAGGAAGAGGATGAGCGATACGAAGACCGAGTTTTGGCTCAAGCGACTTTTGCATTAAACATCGGAAGTCTGATTGGAAATCTTGCCGCTTCGATTATTTCTGGATCACTTTCAATCATGAGGTCAGTTTTTTTTGTCTGTGAACAAAATATCAATACGGTCATGTGCTCTCTTGAGAAGAACGTCGCAAACTGATAATGGAGAGAGCTTGACGTAATTGAAAAGGTTAAGAATGAAGGTTTAGGTCAGGTTTTGCACGAAAATTACTCAAAAGTGCAGTATGGTTTGTTGAACTTTGGAAGGTCTCAACTTCGCTCTAGTTTCTGACCTCAAAATAAAAAAGAAACCTATTTTTTTCAAGTCAGGGGGGGGCTCTTTCGCTGCTTTGCAAAGCTAAAAACTCGAATTGCAATTTTGTTCAGCTGCCCGGTGCCAAAATTTTTTCTGTTGAAAAATGTATATTTAAAACAGGCTCCTCAATTTCCGAGGAAATAACTTTCAGGCAAAAATATTTCCCGGTGGTTGTTGAAAACTGTGCCGCCAAACCGTGGCCAGCTTACAGTTTAGGCTCCGCCCACTTTTCCCCAATTTTTTTTCCTCGGACCTTACGGGGAATAATGCTAGAATTTTCGAAAACCGCGCTCCGCTGAACGAAAAGCTTGTAGTTCAAGTTGGTAACTTCAAAGTTGCTAGCTTCAATTTTCCACAAAAAA</canonical>
            <polymorphic>ATTCGTGTTGTTTCAGTTTTGATTCTTTCAACAATTATTGAATGTTTCAGAATTCCAGTAAAAAATGACTGCGAGAAAACGGAAAATCGAGGAAAGAGATAAAAAAGAAGATGTGAAAAAGAAGATATTGTCTCCAGAAGCTCAGAAAAAGATGAATGAGTTTTATGATCAACAGAACGAGCTGCTCCAGAAGTTTGAACAGGATCAGGAGACGATTCAAAAGCCAATTAAGAAAGCGGAGGTATGTTGGAGATTCTAGGTCATGGATTCCTAGGGCAGTAGTTTTATAGGAAGAGGATGAGCGATACGAAGACCGAGTTTTGGCTCAAGCGACTTTTGCATTAAACATCGGAAGTCTGATTGGAAATCTTGCCGCTTCGATTATTTCTGGATCACTTTCAATCATGAGGTCAGTTTTTTTTGTCTGTGAACAAAATATCAATACGGTCATGTGCTCTCTTGAGAAGAACGTCGCAAACTGATAATGGAGAGAGCTTGAYGTAATTGAAAAGGTTAAGAATGAAGGTTTAGGTCAGGTTTTGCACGAAAATTACTCAAAAGTGCAGTATGGTTTGTTGAACTTTGGAAGGTCTCAACTTCGCTCTAGTTTCTGACCTCAAAATAAAAAAGAAACCTATTTTTTTCAAGTCAGGGGGGGGCTCTTTCGCTGCTTTGCAAAGCTAAAAACTCGAATTGCAATTTTGTTCAGCTGCCCGGTGCCAAAATTTTTTCTGTTGAAAAATGTATATTTAAAACAGGCTCCTCAATTTCCGAGGAAATAACTTTCAGGCAAAAATATTTCCCGGTGGTTGTTGAAAACTGTGCCGCCAAACCGTGGCCAGCTTACAGTTTAGGCTCCGCCCACTTTTCCCCAATTTTTTTTCCTCGGACCTTACGGGGAATAATGCTAGAATTTTCGAAAACCGCGCTCCGCTGAACGAAAAGCTTGTAGTTCAAGTTGGTAACTTCAAAGTTGCTAGCTTCAATTTTCCACAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>501 469 30</canonical_bands>
                <polymorphic_bands>531 469</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTATTTCTGGATCACTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGAGGTCAGAAACTAGAGC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GATTATTTCTGGATCACTTTCAATCATGAGGTCAGTTTTTTTTGTCTGTGAACAAAATATCAATACGGTCATGTGCTCTCTTGAGAAGAACGTCGCAAACTGATAATGGAGAGAGCTTGACGTAATTGAAAAGGTTAAGAATGAAGGTTTAGGTCAGGTTTTGCACGAAAATTACTCAAAAGTGCAGTATGGTTTGTTGAACTTTGGAAGGTCTCAACTTCGCTCTAGTTTCTGACCTCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>GATTATTTCTGGATCACTTTCAATCATGAGGTCAGTTTTTTTTGTCTGTGAACAAAATATCAATACGGTCATGTGCTCTCTTGAGAAGAACGTCGCAAACTGATAATGGAGAGAGCTTGAYGTAATTGAAAAGGTTAAGAATGAAGGTTTAGGTCAGGTTTTGCACGAAAATTACTCAAAAGTGCAGTATGGTTTGTTGAACTTTGGAAGGTCTCAACTTCGCTCTAGTTTCTGACCTCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21979</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>27160</contig_pos>
        <strand>+</strand>
        <context>TTCAAAATAT[A/G]AAAAGCTCGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAATTCATTTTTATTAGTGTTCAAAATATAAAAAGGTCGTTCAAAATAT</left_flank>
        <right_flank>AAAAGCTCGTTTTAGAGAACCAAGAAATTTCGCAGTCGACGCAAGTCATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCTCGTTTCCTATATGGGATATCAAAATTTTGTCAACTGATAACATTTTTTTTTCGTAATATCAAAAACACTTTATTAGTTGACAGATTTTTGATATCGCTTACAGACATCGAGATAATTGAGCTGAAAGTGATTTTTTTAAAAGTTGCCTCCGCGCAACCAGAAACCACTTCCCTGCGCTCTCTCATTCTACCACACTGTCTAACTATTTCAGATATATCGACCATTCAATGATCTACTATACAGGACTGAACGCTCAAGTCGAGCTTCACATAGTTCTTGATGAAAAATTACCGTTGAAAGTAGGACAAATTTTTTAAATCTCTAAAAGTTGAGCTATTATAGATAACTCATGACATATCTCACGATCTGGAGAAGAATATCCAAAAATTGGATTTCGTGGAGCGATGCTTCGTTCATGTTGATTATAATTGCGATGGAGATTAATTAATTCATTTTTATTAGTGTTCAAAATATAAAAAGGTCGTTCAAAATATGAAAAGCTCGTTTTAGAGAACCAAGAAATTTCGCAGTCGACGCAAGTCATTTTTCCCTGAAAAGGGTGAATTACTTTTCTAAAATGTGTTTTTTTCTGTTTTTTCTTACATCTTGGTACAATGTACAACAAACTCTGTAGTCTTGGGGTTTCGCGAAGTCACAGCCGTGGCATTCCATGGTGCCCTAAAACTCCTTTTTCAGATTATCGATGTCTTTGAAGCTTAATTATCTCGGTTCCTATACGAGATACCAATATCAGGTCGACTGATAAAATGTATGCCGTGGTATCACCAACATTTTTTTATCTACCAATTTTTGAAATCTCTTATAGGAACTGAGATAATCAAGCACGTGGTCGTCGTCGTTGGCCGCCACTGCACTTTGAGCTCGATTATCTCCATTTCAGTGAAAAATATCGAAAACTGGTAAACTGATGGAATGTTGGTGAAAATCAATTTACGTTTACATCTTTTTGATATATCATACCAAAATCGAGATAA</canonical>
            <polymorphic>TATCTCGTTTCCTATATGGGATATCAAAATTTTGTCAACTGATAACATTTTTTTTTCGTAATATCAAAAACACTTTATTAGTTGACAGATTTTTGATATCGCTTACAGACATCGAGATAATTGAGCTGAAAGTGATTTTTTTAAAAGTTGCCTCCGCGCAACCAGAAACCACTTCCCTGCGCTCTCTCATTCTACCACACTGTCTAACTATTTCAGATATATCGACCATTCAATGATCTACTATACAGGACTGAACGCTCAAGTCGAGCTTCACATAGTTCTTGATGAAAAATTACCGTTGAAAGTAGGACAAATTTTTTAAATCTCTAAAAGTTGAGCTATTATAGATAACTCATGACATATCTCACGATCTGGAGAAGAATATCCAAAAATTGGATTTCGTGGAGCGATGCTTCGTTCATGTTGATTATAATTGCGATGGAGATTAATTAATTCATTTTTATTAGTGTTCAAAATATAAAAAGGTCGTTCAAAATATRAAAAGCTCGTTTTAGAGAACCAAGAAATTTCGCAGTCGACGCAAGTCATTTTTCCCTGAAAAGGGTGAATTACTTTTCTAAAATGTGTTTTTTTCTGTTTTTTCTTACATCTTGGTACAATGTACAACAAACTCTGTAGTCTTGGGGTTTCGCGAAGTCACAGCCGTGGCATTCCATGGTGCCCTAAAACTCCTTTTTCAGATTATCGATGTCTTTGAAGCTTAATTATCTCGGTTCCTATACGAGATACCAATATCAGGTCGACTGATAAAATGTATGCCGTGGTATCACCAACATTTTTTTATCTACCAATTTTTGAAATCTCTTATAGGAACTGAGATAATCAAGCACGTGGTCGTCGTCGTTGGCCGCCACTGCACTTTGAGCTCGATTATCTCCATTTCAGTGAAAAATATCGAAAACTGGTAAACTGATGGAATGTTGGTGAAAATCAATTTACGTTTACATCTTTTTGATATATCATACCAAAATCGAGATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGAAGAATATCCAAAAATTG</pcr_primer_p1>
		<pcr_primer_p2>CATTGTACCAAGATGTAAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGAGAAGAATATCCAAAAATTGGATTTCGTGGAGCGATGCTTCGTTCATGTTGATTATAATTGCGATGGAGATTAATTAATTCATTTTTATTAGTGTTCAAAATATAAAAAGGTCGTTCAAAATATGAAAAGCTCGTTTTAGAGAACCAAGAAATTTCGCAGTCGACGCAAGTCATTTTTCCCTGAAAAGGGTGAATTACTTTTCTAAAATGTGTTTTTTTCTGTTTTTTCTTACATCTTGGTACAATG</canonical_amplicon>
		<polymorphic_amplicon>GGAGAAGAATATCCAAAAATTGGATTTCGTGGAGCGATGCTTCGTTCATGTTGATTATAATTGCGATGGAGATTAATTAATTCATTTTTATTAGTGTTCAAAATATAAAAAGGTCGTTCAAAATATRAAAAGCTCGTTTTAGAGAACCAAGAAATTTCGCAGTCGACGCAAGTCATTTTTCCCTGAAAAGGGTGAATTACTTTTCTAAAATGTGTTTTTTTCTGTTTTTTCTTACATCTTGGTACAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21980</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>26880</contig_pos>
        <strand>+</strand>
        <context>ATTTCAGATA[C/T]ATCGACCATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACTTCCCTGCGCTCTCTCATTCTACCACACTGTCTAACTATTTCAGATA</left_flank>
        <right_flank>ATCGACCATTCAATGATCTACTATACAGGACTGAACGCTCAAGTCGAGCT</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTTGGAATTTCTGCAGAAAGGGATCAAATGGCGAGAATTCTGAATATCACACTGAAGCATGATGAGAGGATAAAGTGAGTACTTTCACTGTTGAGCTTAATTATCTCAATTCCAATAAGAGATATCAAAAAGTTGTCAACTCATTAAATGTTACCAACATTTTTTAGTTGACAGGATTTTGACACTTCTCATAGGAACGGAAACAATTGAGCTCAAAGGATGAGCCACGAATGGTGGCGGGGTCGGCGCCATTACTGTACTTTCTCTTTGAACTCAATTATCTCGTTTCCTATATGGGATATCAAAATTTTGTCAACTGATAACATTTTTTTTTCGTAATATCAAAAACACTTTATTAGTTGACAGATTTTTGATATCGCTTACAGACATCGAGATAATTGAGCTGAAAGTGATTTTTTTAAAAGTTGCCTCCGCGCAACCAGAAACCACTTCCCTGCGCTCTCTCATTCTACCACACTGTCTAACTATTTCAGATATATCGACCATTCAATGATCTACTATACAGGACTGAACGCTCAAGTCGAGCTTCACATAGTTCTTGATGAAAAATTACCGTTGAAAGTAGGACAAATTTTTTAAATCTCTAAAAGTTGAGCTATTATAGATAACTCATGACATATCTCACGATCTGGAGAAGAATATCCAAAAATTGGATTTCGTGGAGCGATGCTTCGTTCATGTTGATTATAATTGCGATGGAGATTAATTAATTCATTTTTATTAGTGTTCAAAATATAAAAAGGTCGTTCAAAATATGAAAAGCTCGTTTTAGAGAACCAAGAAATTTCGCAGTCGACGCAAGTCATTTTTCCCTGAAAAGGGTGAATTACTTTTCTAAAATGTGTTTTTTTCTGTTTTTTCTTACATCTTGGTACAATGTACAACAAACTCTGTAGTCTTGGGGTTTCGCGAAGTCACAGCCGTGGCATTCCATGGTGCCCTAAAACTCCTTTTTCAGATTATCGATGTCTTTGAAG</canonical>
            <polymorphic>TGGTTGGAATTTCTGCAGAAAGGGATCAAATGGCGAGAATTCTGAATATCACACTGAAGCATGATGAGAGGATAAAGTGAGTACTTTCACTGTTGAGCTTAATTATCTCAATTCCAATAAGAGATATCAAAAAGTTGTCAACTCATTAAATGTTACCAACATTTTTTAGTTGACAGGATTTTGACACTTCTCATAGGAACGGAAACAATTGAGCTCAAAGGATGAGCCACGAATGGTGGCGGGGTCGGCGCCATTACTGTACTTTCTCTTTGAACTCAATTATCTCGTTTCCTATATGGGATATCAAAATTTTGTCAACTGATAACATTTTTTTTTCGTAATATCAAAAACACTTTATTAGTTGACAGATTTTTGATATCGCTTACAGACATCGAGATAATTGAGCTGAAAGTGATTTTTTTAAAAGTTGCCTCCGCGCAACCAGAAACCACTTCCCTGCGCTCTCTCATTCTACCACACTGTCTAACTATTTCAGATAYATCGACCATTCAATGATCTACTATACAGGACTGAACGCTCAAGTCGAGCTTCACATAGTTCTTGATGAAAAATTACCGTTGAAAGTAGGACAAATTTTTTAAATCTCTAAAAGTTGAGCTATTATAGATAACTCATGACATATCTCACGATCTGGAGAAGAATATCCAAAAATTGGATTTCGTGGAGCGATGCTTCGTTCATGTTGATTATAATTGCGATGGAGATTAATTAATTCATTTTTATTAGTGTTCAAAATATAAAAAGGTCGTTCAAAATATGAAAAGCTCGTTTTAGAGAACCAAGAAATTTCGCAGTCGACGCAAGTCATTTTTCCCTGAAAAGGGTGAATTACTTTTCTAAAATGTGTTTTTTTCTGTTTTTTCTTACATCTTGGTACAATGTACAACAAACTCTGTAGTCTTGGGGTTTCGCGAAGTCACAGCCGTGGCATTCCATGGTGCCCTAAAACTCCTTTTTCAGATTATCGATGTCTTTGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGATGAGAGGATAAAGTGAGT</pcr_primer_p1>
		<pcr_primer_p2>TCATCAAGAACTATGTGAAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>509</pcr_amplicon_size>
		<canonical_amplicon>CATGATGAGAGGATAAAGTGAGTACTTTCACTGTTGAGCTTAATTATCTCAATTCCAATAAGAGATATCAAAAAGTTGTCAACTCATTAAATGTTACCAACATTTTTTAGTTGACAGGATTTTGACACTTCTCATAGGAACGGAAACAATTGAGCTCAAAGGATGAGCCACGAATGGTGGCGGGGTCGGCGCCATTACTGTACTTTCTCTTTGAACTCAATTATCTCGTTTCCTATATGGGATATCAAAATTTTGTCAACTGATAACATTTTTTTTTCGTAATATCAAAAACACTTTATTAGTTGACAGATTTTTGATATCGCTTACAGACATCGAGATAATTGAGCTGAAAGTGATTTTTTTAAAAGTTGCCTCCGCGCAACCAGAAACCACTTCCCTGCGCTCTCTCATTCTACCACACTGTCTAACTATTTCAGATATATCGACCATTCAATGATCTACTATACAGGACTGAACGCTCAAGTCGAGCTTCACATAGTTCTTGATGA</canonical_amplicon>
		<polymorphic_amplicon>CATGATGAGAGGATAAAGTGAGTACTTTCACTGTTGAGCTTAATTATCTCAATTCCAATAAGAGATATCAAAAAGTTGTCAACTCATTAAATGTTACCAACATTTTTTAGTTGACAGGATTTTGACACTTCTCATAGGAACGGAAACAATTGAGCTCAAAGGATGAGCCACGAATGGTGGCGGGGTCGGCGCCATTACTGTACTTTCTCTTTGAACTCAATTATCTCGTTTCCTATATGGGATATCAAAATTTTGTCAACTGATAACATTTTTTTTTCGTAATATCAAAAACACTTTATTAGTTGACAGATTTTTGATATCGCTTACAGACATCGAGATAATTGAGCTGAAAGTGATTTTTTTAAAAGTTGCCTCCGCGCAACCAGAAACCACTTCCCTGCGCTCTCTCATTCTACCACACTGTCTAACTATTTCAGATAYATCGACCATTCAATGATCTACTATACAGGACTGAACGCTCAAGTCGAGCTTCACATAGTTCTTGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21981</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>46509</contig_pos>
        <strand>+</strand>
        <context>TTTTTGTATC[C/G]CACTTTTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCCGATTCAGAACAATCATGATTCCTCCCACCAGATTAATTTTTTGTATC</left_flank>
        <right_flank>CACTTTTTTGCGGTCCCCCAACTTTTTACTTCGGTCATTTTTCGAATCAC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAGTTGATGGCTAGGGGAACCCAGGAGTGCGCGGAACGGATTTCTGATTCCCGAAAATTCAAAACTTCTGGTTTTAAGAAAAACATTTTAAAGGTGGGGGGACAGGAGTTTTTTTGAATTTTTTTTGGAGCTAGGGTATGCATCATACTTGTAACGGGCCGGGCCGGGCTTTTTCCCGAATTTCGGAGGCCCGGCGGGCCTGTCATTAATTTTAATAAAAAATTTTTGTCTGAACTTGTTCTCTTTTTCTCAAATTTAATCATGTTTGAATTTTTGAAATTCTGAAAAACCACATGCCCATTTTTTTTTTGGGTATTTTGTAGTTTGAAATTTGAAAATCCAAAACTTATAGACTCCAATCTATTGATCTCTCTGAACGTTATACATCATGTCCAACCAATTAAACAATGAAACCATGTAATACAAAGAACACAAAAGTACAGTTTTTCCGATTCAGAACAATCATGATTCCTCCCACCAGATTAATTTTTTGTATCGCACTTTTTTGCGGTCCCCCAACTTTTTACTTCGGTCATTTTTCGAATCACAATCATGATTCGCATATTTTCTCTAATATTTCTTTTTGTCTATTTACATTCAGTTACTCTTGCCGATGATTTAATTTTGGTTAAGGTAAGTACAGTAATCCTTTCCTGTGAAAACCTAACAATTCAGCTCGGTGAAAACGCGACTATTCCACTTCCAGTCAGCGCCAATTATCGGAGAATCGTGAAAGATGTCGATTATAAGGATGAAGAGCATCTCTATAGAGTTTGTAATGGGAAAAACAAGGCGAAATGCGGGTATTGGGAAAATGTGAAGGTGAGTGGGGCATATAATAATAATAATAATTTATTGATCAGAAGAAAATATGGCACAAAAGTTATAACGGGAGTTCTAGATAAAATCCCTAACGAGATGAACGTAGAGAATGGGGAAGAAAATAGTAAACATGTAAGGTTGGCAAGATATTAAAAAAAAAGGGAAAAGGTGAGCAG</canonical>
            <polymorphic>CAAAGTTGATGGCTAGGGGAACCCAGGAGTGCGCGGAACGGATTTCTGATTCCCGAAAATTCAAAACTTCTGGTTTTAAGAAAAACATTTTAAAGGTGGGGGGACAGGAGTTTTTTTGAATTTTTTTTGGAGCTAGGGTATGCATCATACTTGTAACGGGCCGGGCCGGGCTTTTTCCCGAATTTCGGAGGCCCGGCGGGCCTGTCATTAATTTTAATAAAAAATTTTTGTCTGAACTTGTTCTCTTTTTCTCAAATTTAATCATGTTTGAATTTTTGAAATTCTGAAAAACCACATGCCCATTTTTTTTTTGGGTATTTTGTAGTTTGAAATTTGAAAATCCAAAACTTATAGACTCCAATCTATTGATCTCTCTGAACGTTATACATCATGTCCAACCAATTAAACAATGAAACCATGTAATACAAAGAACACAAAAGTACAGTTTTTCCGATTCAGAACAATCATGATTCCTCCCACCAGATTAATTTTTTGTATCSCACTTTTTTGCGGTCCCCCAACTTTTTACTTCGGTCATTTTTCGAATCACAATCATGATTCGCATATTTTCTCTAATATTTCTTTTTGTCTATTTACATTCAGTTACTCTTGCCGATGATTTAATTTTGGTTAAGGTAAGTACAGTAATCCTTTCCTGTGAAAACCTAACAATTCAGCTCGGTGAAAACGCGACTATTCCACTTCCAGTCAGCGCCAATTATCGGAGAATCGTGAAAGATGTCGATTATAAGGATGAAGAGCATCTCTATAGAGTTTGTAATGGGAAAAACAAGGCGAAATGCGGGTATTGGGAAAATGTGAAGGTGAGTGGGGCATATAATAATAATAATAATTTATTGATCAGAAGAAAATATGGCACAAAAGTTATAACGGGAGTTCTAGATAAAATCCCTAACGAGATGAACGTAGAGAATGGGGAAGAAAATAGTAAACATGTAAGGTTGGCAAGATATTAAAAAAAAAGGGAAAAGGTGAGCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACCATGTAATACAAAGAACACA</pcr_primer_p1>
		<pcr_primer_p2>CACAGGAAAGGATTACTGTACTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAACCATGTAATACAAAGAACACAAAAGTACAGTTTTTCCGATTCAGAACAATCATGATTCCTCCCACCAGATTAATTTTTTGTATCGCACTTTTTTGCGGTCCCCCAACTTTTTACTTCGGTCATTTTTCGAATCACAATCATGATTCGCATATTTTCTCTAATATTTCTTTTTGTCTATTTACATTCAGTTACTCTTGCCGATGATTTAATTTTGGTTAAGGTAAGTACAGTAATCCTTTCCTGTG</canonical_amplicon>
		<polymorphic_amplicon>AAACCATGTAATACAAAGAACACAAAAGTACAGTTTTTCCGATTCAGAACAATCATGATTCCTCCCACCAGATTAATTTTTTGTATCSCACTTTTTTGCGGTCCCCCAACTTTTTACTTCGGTCATTTTTCGAATCACAATCATGATTCGCATATTTTCTCTAATATTTCTTTTTGTCTATTTACATTCAGTTACTCTTGCCGATGATTTAATTTTGGTTAAGGTAAGTACAGTAATCCTTTCCTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb21982</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>46362</contig_pos>
        <strand>+</strand>
        <context>CAAAACTTAT[A/G]GACTCCAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTTTTTGGGTATTTTGTAGTTTGAAATTTGAAAATCCAAAACTTAT</left_flank>
        <right_flank>GACTCCAATCTATTGATCTCTCTGAACGTTATACATCATGTCCAACCAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTACAGTTGCTCCCATTTTTCTCGTTTTCTGTGATAGGTATCAAAAAGTTGTCAACTTACAAATTGTTCACCATAATAACAAAAATATTGTGCCAGTTGACCACTATTTGGTAACTCTTACAGGAATTGAGATACATTTATGTAGTCAAAGTTGATGGCTAGGGGAACCCAGGAGTGCGCGGAACGGATTTCTGATTCCCGAAAATTCAAAACTTCTGGTTTTAAGAAAAACATTTTAAAGGTGGGGGGACAGGAGTTTTTTTGAATTTTTTTTGGAGCTAGGGTATGCATCATACTTGTAACGGGCCGGGCCGGGCTTTTTCCCGAATTTCGGAGGCCCGGCGGGCCTGTCATTAATTTTAATAAAAAATTTTTGTCTGAACTTGTTCTCTTTTTCTCAAATTTAATCATGTTTGAATTTTTGAAATTCTGAAAAACCACATGCCCATTTTTTTTTTGGGTATTTTGTAGTTTGAAATTTGAAAATCCAAAACTTATAGACTCCAATCTATTGATCTCTCTGAACGTTATACATCATGTCCAACCAATTAAACAATGAAACCATGTAATACAAAGAACACAAAAGTACAGTTTTTCCGATTCAGAACAATCATGATTCCTCCCACCAGATTAATTTTTTGTATCGCACTTTTTTGCGGTCCCCCAACTTTTTACTTCGGTCATTTTTCGAATCACAATCATGATTCGCATATTTTCTCTAATATTTCTTTTTGTCTATTTACATTCAGTTACTCTTGCCGATGATTTAATTTTGGTTAAGGTAAGTACAGTAATCCTTTCCTGTGAAAACCTAACAATTCAGCTCGGTGAAAACGCGACTATTCCACTTCCAGTCAGCGCCAATTATCGGAGAATCGTGAAAGATGTCGATTATAAGGATGAAGAGCATCTCTATAGAGTTTGTAATGGGAAAAACAAGGCGAAATGCGGGTATTGGGAAAATGTGAAGGTGAGTGGGGCATATAATAATAATAATAA</canonical>
            <polymorphic>ATTACAGTTGCTCCCATTTTTCTCGTTTTCTGTGATAGGTATCAAAAAGTTGTCAACTTACAAATTGTTCACCATAATAACAAAAATATTGTGCCAGTTGACCACTATTTGGTAACTCTTACAGGAATTGAGATACATTTATGTAGTCAAAGTTGATGGCTAGGGGAACCCAGGAGTGCGCGGAACGGATTTCTGATTCCCGAAAATTCAAAACTTCTGGTTTTAAGAAAAACATTTTAAAGGTGGGGGGACAGGAGTTTTTTTGAATTTTTTTTGGAGCTAGGGTATGCATCATACTTGTAACGGGCCGGGCCGGGCTTTTTCCCGAATTTCGGAGGCCCGGCGGGCCTGTCATTAATTTTAATAAAAAATTTTTGTCTGAACTTGTTCTCTTTTTCTCAAATTTAATCATGTTTGAATTTTTGAAATTCTGAAAAACCACATGCCCATTTTTTTTTTGGGTATTTTGTAGTTTGAAATTTGAAAATCCAAAACTTATRGACTCCAATCTATTGATCTCTCTGAACGTTATACATCATGTCCAACCAATTAAACAATGAAACCATGTAATACAAAGAACACAAAAGTACAGTTTTTCCGATTCAGAACAATCATGATTCCTCCCACCAGATTAATTTTTTGTATCGCACTTTTTTGCGGTCCCCCAACTTTTTACTTCGGTCATTTTTCGAATCACAATCATGATTCGCATATTTTCTCTAATATTTCTTTTTGTCTATTTACATTCAGTTACTCTTGCCGATGATTTAATTTTGGTTAAGGTAAGTACAGTAATCCTTTCCTGTGAAAACCTAACAATTCAGCTCGGTGAAAACGCGACTATTCCACTTCCAGTCAGCGCCAATTATCGGAGAATCGTGAAAGATGTCGATTATAAGGATGAAGAGCATCTCTATAGAGTTTGTAATGGGAAAAACAAGGCGAAATGCGGGTATTGGGAAAATGTGAAGGTGAGTGGGGCATATAATAATAATAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAACTTGTTCTCTTTTTCTCA</pcr_primer_p1>
		<pcr_primer_p2>CTGAATCGGAAAAACTGTACTT</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>CTGAACTTGTTCTCTTTTTCTCAAATTTAATCATGTTTGAATTTTTGAAATTCTGAAAAACCACATGCCCATTTTTTTTTTGGGTATTTTGTAGTTTGAAATTTGAAAATCCAAAACTTATAGACTCCAATCTATTGATCTCTCTGAACGTTATACATCATGTCCAACCAATTAAACAATGAAACCATGTAATACAAAGAACACAAAAGTACAGTTTTTCCGATTCAG</canonical_amplicon>
		<polymorphic_amplicon>CTGAACTTGTTCTCTTTTTCTCAAATTTAATCATGTTTGAATTTTTGAAATTCTGAAAAACCACATGCCCATTTTTTTTTTGGGTATTTTGTAGTTTGAAATTTGAAAATCCAAAACTTATRGACTCCAATCTATTGATCTCTCTGAACGTTATACATCATGTCCAACCAATTAAACAATGAAACCATGTAATACAAAGAACACAAAAGTACAGTTTTTCCGATTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22024</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>238824</contig_pos>
        <strand>+</strand>
        <context>TTTTCTCGGT[C/T]CTTTTGAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGCTATCTAAAAATCAGTGCCGTTGACTTCCAGCCATTTTTTCTCGGT</left_flank>
        <right_flank>CTTTTGAAAGATGTCAAAAATGGTCAATTAATAAAATATTTGTGTTGTTA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGGAATCCTCCAGATGACGAATTCTAGGCAAATTCAGAATATGTTCTCTTCCCAACAAAGTACCTCTATTTTATACTGCTACGGGTAACTGGTTATTTTCTTCACTCCTCCCTTTCGGTTTTGTAGAAGAGTGAATTAAAATGCATTTGCAAATTACGGAAGCGAAGGAAAAGAACTTCTTTGTGTCATTTTTCTTCGTTCCACGCTCTCTCTCTCTCTCTCTCTCTCTCAGTTGGTAGGCAAAAAACCATAAAATAAGAAATCCCATTTGATGGATATTCTTTTTGGCGGTTCTTCGCAGTGAAAACCAATAATGAGATTTATTCCGTTTAGATGGCACAAAAAAATTCAAAAAGGAGCAAGCAATAGAGCAACATTGATGAGTTCTAGAGAAGGAAGAAAAATATTAAGATCCAGAAAAATAGGGTCCAAAATTCATTGAACGTTTCAGCTATCTAAAAATCAGTGCCGTTGACTTCCAGCCATTTTTTCTCGGTCCTTTTGAAAGATGTCAAAAATGGTCAATTAATAAAATATTTGTGTTGTTATGATAGGCAAAATGTTGATATTTTTCACAGGAGCCGAGAAAAATTGGCTCAAAGTAAACCACCCTTCAGACCCTTCAATAAGACTAAAATCATCATTGGTTATAACTTATATCAGACGTCCTGAAAACAGAGCTTCCAGGAATCTCAAAACCTTTTTCAACTATTCAAAGACATCCAGTGAAAACAACTCGATTGCTAGAAGTCCAAACCACAGGGGTAATTATTAGCAAGAAAATGAGGAAGACCTTGGAAACCTGAAACCAGTAATTTGCGGTTTAATTGTACTTTATATAGAGTGTAGTTCAGTTTTTCAGGGGAAGTTTGAACTTTTGTATTTTATCGTCTACAAGAAAAATGTCTGAATCAAGGTACATTTCCCTGAAGTTTCGGATGTTTGAACTTTGTAGAAAAATTGAAGATTGAAAAGAAATGTGTGTTGAATTCGGAATT</canonical>
            <polymorphic>TTCGGAATCCTCCAGATGACGAATTCTAGGCAAATTCAGAATATGTTCTCTTCCCAACAAAGTACCTCTATTTTATACTGCTACGGGTAACTGGTTATTTTCTTCACTCCTCCCTTTCGGTTTTGTAGAAGAGTGAATTAAAATGCATTTGCAAATTACGGAAGCGAAGGAAAAGAACTTCTTTGTGTCATTTTTCTTCGTTCCACGCTCTCTCTCTCTCTCTCTCTCTCTCAGTTGGTAGGCAAAAAACCATAAAATAAGAAATCCCATTTGATGGATATTCTTTTTGGCGGTTCTTCGCAGTGAAAACCAATAATGAGATTTATTCCGTTTAGATGGCACAAAAAAATTCAAAAAGGAGCAAGCAATAGAGCAACATTGATGAGTTCTAGAGAAGGAAGAAAAATATTAAGATCCAGAAAAATAGGGTCCAAAATTCATTGAACGTTTCAGCTATCTAAAAATCAGTGCCGTTGACTTCCAGCCATTTTTTCTCGGTYCTTTTGAAAGATGTCAAAAATGGTCAATTAATAAAATATTTGTGTTGTTATGATAGGCAAAATGTTGATATTTTTCACAGGAGCCGAGAAAAATTGGCTCAAAGTAAACCACCCTTCAGACCCTTCAATAAGACTAAAATCATCATTGGTTATAACTTATATCAGACGTCCTGAAAACAGAGCTTCCAGGAATCTCAAAACCTTTTTCAACTATTCAAAGACATCCAGTGAAAACAACTCGATTGCTAGAAGTCCAAACCACAGGGGTAATTATTAGCAAGAAAATGAGGAAGACCTTGGAAACCTGAAACCAGTAATTTGCGGTTTAATTGTACTTTATATAGAGTGTAGTTCAGTTTTTCAGGGGAAGTTTGAACTTTTGTATTTTATCGTCTACAAGAAAAATGTCTGAATCAAGGTACATTTCCCTGAAGTTTCGGATGTTTGAACTTTGTAGAAAAATTGAAGATTGAAAAGAAATGTGTGTTGAATTCGGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>503 428 69</canonical_bands>
                <polymorphic_bands>572 428</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>503 428 69</canonical_bands>
                <polymorphic_bands>572 428</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATAATGAGATTTATTCCGTTTA</pcr_primer_p1>
		<pcr_primer_p2>TGCCTATCATAACAACACAAATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAATAATGAGATTTATTCCGTTTAGATGGCACAAAAAAATTCAAAAAGGAGCAAGCAATAGAGCAACATTGATGAGTTCTAGAGAAGGAAGAAAAATATTAAGATCCAGAAAAATAGGGTCCAAAATTCATTGAACGTTTCAGCTATCTAAAAATCAGTGCCGTTGACTTCCAGCCATTTTTTCTCGGTCCTTTTGAAAGATGTCAAAAATGGTCAATTAATAAAATATTTGTGTTGTTATGATAGGCA</canonical_amplicon>
		<polymorphic_amplicon>CAATAATGAGATTTATTCCGTTTAGATGGCACAAAAAAATTCAAAAAGGAGCAAGCAATAGAGCAACATTGATGAGTTCTAGAGAAGGAAGAAAAATATTAAGATCCAGAAAAATAGGGTCCAAAATTCATTGAACGTTTCAGCTATCTAAAAATCAGTGCCGTTGACTTCCAGCCATTTTTTCTCGGTYCTTTTGAAAGATGTCAAAAATGGTCAATTAATAAAATATTTGTGTTGTTATGATAGGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22025</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>238680</contig_pos>
        <strand></strand>
        <context>AAAAWTCAAA[A/T]AGGAGCAAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAACCAATAATGAGATTTATTCCGTTTAGATGGCACAAAAAAATTCAAA</left_flank>
        <right_flank>AGGAGCAAGCAATAGAGCAACATTGATGAGTTCTAGAGAAGGAAGAAAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACATTGAAAATTCTAAACATACCTGAATTTCCATCTCATCCATTTCTTGGAACAATCCATGAAGAACCACGAGACAACTCAAAATTGCTCCTAAAGAGCCAATTGTGGAGACAGCGGCCACTGCCTTTACCTCCCACAACATCTTCGGAATCCTCCAGATGACGAATTCTAGGCAAATTCAGAATATGTTCTCTTCCCAACAAAGTACCTCTATTTTATACTGCTACGGGTAACTGGTTATTTTCTTCACTCCTCCCTTTCGGTTTTGTAGAAGAGTGAATTAAAATGCATTTGCAAATTACGGAAGCGAAGGAAAAGAACTTCTTTGTGTCATTTTTCTTCGTTCCACGCTCTCTCTCTCTCTCTCTCTCTCTCAGTTGGTAGGCAAAAAACCATAAAATAAGAAATCCCATTTGATGGATATTCTTTTTGGCGGTTCTTCGCAGTGAAAACCAATAATGAGATTTATTCCGTTTAGATGGCACAAAAAAATTCAAAAAGGAGCAAGCAATAGAGCAACATTGATGAGTTCTAGAGAAGGAAGAAAAATATTAAGATCCAGAAAAATAGGGTCCAAAATTCATTGAACGTTTCAGCTATCTAAAAATCAGTGCCGTTGACTTCCAGCCATTTTTTCTCGGTCCTTTTGAAAGATGTCAAAAATGGTCAATTAATAAAATATTTGTGTTGTTATGATAGGCAAAATGTTGATATTTTTCACAGGAGCCGAGAAAAATTGGCTCAAAGTAAACCACCCTTCAGACCCTTCAATAAGACTAAAATCATCATTGGTTATAACTTATATCAGACGTCCTGAAAACAGAGCTTCCAGGAATCTCAAAACCTTTTTCAACTATTCAAAGACATCCAGTGAAAACAACTCGATTGCTAGAAGTCCAAACCACAGGGGTAATTATTAGCAAGAAAATGAGGAAGACCTTGGAAACCTGAAACCAGTAATTTGCGGTTTAATTGTACTTTATATAGAGTGTAGTTCAG</canonical>
            <polymorphic>AACATTGAAAATTCTAAACATACCTGAATTTCCATCTCATCCATTTCTTGGAACAATCCATGAAGAACCACGAGACAACTCAAAATTGCTCCTAAAGAGCCAATTGTGGAGACAGCGGCCACTGCCTTTACCTCCCACAACATCTTCGGAATCCTCCAGATGACGAATTCTAGGCAAATTCAGAATATGTTCTCTTCCCAACAAAGTACCTCTATTTTATACTGCTACGGGTAACTGGTTATTTTCTTCACTCCTCCCTTTCGGTTTTGTAGAAGAGTGAATTAAAATGCATTTGCAAATTACGGAAGCGAAGGAAAAGAACTTCTTTGTGTCATTTTTCTTCGTTCCACGCTCTCTCTCTCTCTCTCTCTCTCTCAGTTGGTAGGCAAAAAACCATAAAATAAGAAATCCCATTTGATGGATATTCTTTTTGGCGGTTCTTCGCAGTGAAAACCAATAATGAGATTTATTCCGTTTAGATGGCACAAAAAAATTCAAAWAGGAGCAAGCAATAGAGCAACATTGATGAGTTCTAGAGAAGGAAGAAAAATATTAAGATCCAGAAAAATAGGGTCCAAAATTCATTGAACGTTTCAGCTATCTAAAAATCAGTGCCGTTGACTTCCAGCCATTTTTTCTCGGTCCTTTTGAAAGATGTCAAAAATGGTCAATTAATAAAATATTTGTGTTGTTATGATAGGCAAAATGTTGATATTTTTCACAGGAGCCGAGAAAAATTGGCTCAAAGTAAACCACCCTTCAGACCCTTCAATAAGACTAAAATCATCATTGGTTATAACTTATATCAGACGTCCTGAAAACAGAGCTTCCAGGAATCTCAAAACCTTTTTCAACTATTCAAAGACATCCAGTGAAAACAACTCGATTGCTAGAAGTCCAAACCACAGGGGTAATTATTAGCAAGAAAATGAGGAAGACCTTGGAAACCTGAAACCAGTAATTTGCGGTTTAATTGTACTTTATATAGAGTGTAGTTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTCTTTGTGTCATTTTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>ACCCTATTTTTCTGGATCTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ACTTCTTTGTGTCATTTTTCTTCGTTCCACGCTCTCTCTCTCTCTCTCTCTCTCTCAGTTGGTAGGCAAAAAACCATAAAATAAGAAATCCCATTTGATGGATATTCTTTTTGGCGGTTCTTCGCAGTGAAAACCAATAATGAGATTTATTCCGTTTAGATGGCACAAAAAAATTCAAAAAGGAGCAAGCAATAGAGCAACATTGATGAGTTCTAGAGAAGGAAGAAAAATATTAAGATCCAGAAAAATAGGGT</canonical_amplicon>
		<polymorphic_amplicon>ACTTCTTTGTGTCATTTTTCTTCGTTCCACGCTCTCTCTCTCTCTCTCTCTCTCTCAGTTGGTAGGCAAAAAACCATAAAATAAGAAATCCCATTTGATGGATATTCTTTTTGGCGGTTCTTCGCAGTGAAAACCAATAATGAGATTTATTCCGTTTAGATGGCACAAAAAAATTCAAAWAGGAGCAAGCAATAGAGCAACATTGATGAGTTCTAGAGAAGGAAGAAAAATATTAAGATCCAGAAAAATAGGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22026</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>238674</contig_pos>
        <strand></strand>
        <context>CWMAAAAAAA[T/A]TCAAAWAGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GCAGTGAAAACCAATAATGAGATTTATTCCGTTTAGATGGCACAAAAAAA</left_flank>
        <right_flank>TCAAAAAGGAGCAAGCAATAGAGCAACATTGATGAGTTCTAGAGAAGGAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTCTAACATTGAAAATTCTAAACATACCTGAATTTCCATCTCATCCATTTCTTGGAACAATCCATGAAGAACCACGAGACAACTCAAAATTGCTCCTAAAGAGCCAATTGTGGAGACAGCGGCCACTGCCTTTACCTCCCACAACATCTTCGGAATCCTCCAGATGACGAATTCTAGGCAAATTCAGAATATGTTCTCTTCCCAACAAAGTACCTCTATTTTATACTGCTACGGGTAACTGGTTATTTTCTTCACTCCTCCCTTTCGGTTTTGTAGAAGAGTGAATTAAAATGCATTTGCAAATTACGGAAGCGAAGGAAAAGAACTTCTTTGTGTCATTTTTCTTCGTTCCACGCTCTCTCTCTCTCTCTCTCTCTCTCAGTTGGTAGGCAAAAAACCATAAAATAAGAAATCCCATTTGATGGATATTCTTTTTGGCGGTTCTTCGCAGTGAAAACCAATAATGAGATTTATTCCGTTTAGATGGCACAAAAAAATTCAAAAAGGAGCAAGCAATAGAGCAACATTGATGAGTTCTAGAGAAGGAAGAAAAATATTAAGATCCAGAAAAATAGGGTCCAAAATTCATTGAACGTTTCAGCTATCTAAAAATCAGTGCCGTTGACTTCCAGCCATTTTTTCTCGGTCCTTTTGAAAGATGTCAAAAATGGTCAATTAATAAAATATTTGTGTTGTTATGATAGGCAAAATGTTGATATTTTTCACAGGAGCCGAGAAAAATTGGCTCAAAGTAAACCACCCTTCAGACCCTTCAATAAGACTAAAATCATCATTGGTTATAACTTATATCAGACGTCCTGAAAACAGAGCTTCCAGGAATCTCAAAACCTTTTTCAACTATTCAAAGACATCCAGTGAAAACAACTCGATTGCTAGAAGTCCAAACCACAGGGGTAATTATTAGCAAGAAAATGAGGAAGACCTTGGAAACCTGAAACCAGTAATTTGCGGTTTAATTGTACTTTATATAGAGTGTA</canonical>
            <polymorphic>ATCTCTAACATTGAAAATTCTAAACATACCTGAATTTCCATCTCATCCATTTCTTGGAACAATCCATGAAGAACCACGAGACAACTCAAAATTGCTCCTAAAGAGCCAATTGTGGAGACAGCGGCCACTGCCTTTACCTCCCACAACATCTTCGGAATCCTCCAGATGACGAATTCTAGGCAAATTCAGAATATGTTCTCTTCCCAACAAAGTACCTCTATTTTATACTGCTACGGGTAACTGGTTATTTTCTTCACTCCTCCCTTTCGGTTTTGTAGAAGAGTGAATTAAAATGCATTTGCAAATTACGGAAGCGAAGGAAAAGAACTTCTTTGTGTCATTTTTCTTCGTTCCACGCTCTCTCTCTCTCTCTCTCTCTCTCAGTTGGTAGGCAAAAAACCATAAAATAAGAAATCCCATTTGATGGATATTCTTTTTGGCGGTTCTTCGCAGTGAAAACCAATAATGAGATTTATTCCGTTTAGATGGCACAAAAAAAWTCAAAAAGGAGCAAGCAATAGAGCAACATTGATGAGTTCTAGAGAAGGAAGAAAAATATTAAGATCCAGAAAAATAGGGTCCAAAATTCATTGAACGTTTCAGCTATCTAAAAATCAGTGCCGTTGACTTCCAGCCATTTTTTCTCGGTCCTTTTGAAAGATGTCAAAAATGGTCAATTAATAAAATATTTGTGTTGTTATGATAGGCAAAATGTTGATATTTTTCACAGGAGCCGAGAAAAATTGGCTCAAAGTAAACCACCCTTCAGACCCTTCAATAAGACTAAAATCATCATTGGTTATAACTTATATCAGACGTCCTGAAAACAGAGCTTCCAGGAATCTCAAAACCTTTTTCAACTATTCAAAGACATCCAGTGAAAACAACTCGATTGCTAGAAGTCCAAACCACAGGGGTAATTATTAGCAAGAAAATGAGGAAGACCTTGGAAACCTGAAACCAGTAATTTGCGGTTTAATTGTACTTTATATAGAGTGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>416 315 139 87 17 15 11</canonical_bands>
                <polymorphic_bands>416 402 139 17 15 11</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>194 177 103 91 87 66 64 57 47 23 18 18 17 15 12 11</canonical_bands>
                <polymorphic_bands>281 177 103 91 66 64 57 47 23 18 18 17 15 12 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTCTTTGTGTCATTTTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>ACCCTATTTTTCTGGATCTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ACTTCTTTGTGTCATTTTTCTTCGTTCCACGCTCTCTCTCTCTCTCTCTCTCTCTCAGTTGGTAGGCAAAAAACCATAAAATAAGAAATCCCATTTGATGGATATTCTTTTTGGCGGTTCTTCGCAGTGAAAACCAATAATGAGATTTATTCCGTTTAGATGGCACAAAAAAATTCAAAAAGGAGCAAGCAATAGAGCAACATTGATGAGTTCTAGAGAAGGAAGAAAAATATTAAGATCCAGAAAAATAGGGT</canonical_amplicon>
		<polymorphic_amplicon>ACTTCTTTGTGTCATTTTTCTTCGTTCCACGCTCTCTCTCTCTCTCTCTCTCTCTCAGTTGGTAGGCAAAAAACCATAAAATAAGAAATCCCATTTGATGGATATTCTTTTTGGCGGTTCTTCGCAGTGAAAACCAATAATGAGATTTATTCCGTTTAGATGGCACAAAAAAAWTCAAAAAGGAGCAAGCAATAGAGCAACATTGATGAGTTCTAGAGAAGGAAGAAAAATATTAAGATCCAGAAAAATAGGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22027</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>238666</contig_pos>
        <strand>+</strand>
        <context>TTAGATGGCW[A/C]AAAAAAAWTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGTTCTTCGCAGTGAAAACCAATAATGAGATTTATTCCGTTTAGATGGCA</left_flank>
        <right_flank>AAAAAAATTCAAAAAGGAGCAAGCAATAGAGCAACATTGATGAGTTCTAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCAAGAATCTCTAACATTGAAAATTCTAAACATACCTGAATTTCCATCTCATCCATTTCTTGGAACAATCCATGAAGAACCACGAGACAACTCAAAATTGCTCCTAAAGAGCCAATTGTGGAGACAGCGGCCACTGCCTTTACCTCCCACAACATCTTCGGAATCCTCCAGATGACGAATTCTAGGCAAATTCAGAATATGTTCTCTTCCCAACAAAGTACCTCTATTTTATACTGCTACGGGTAACTGGTTATTTTCTTCACTCCTCCCTTTCGGTTTTGTAGAAGAGTGAATTAAAATGCATTTGCAAATTACGGAAGCGAAGGAAAAGAACTTCTTTGTGTCATTTTTCTTCGTTCCACGCTCTCTCTCTCTCTCTCTCTCTCTCAGTTGGTAGGCAAAAAACCATAAAATAAGAAATCCCATTTGATGGATATTCTTTTTGGCGGTTCTTCGCAGTGAAAACCAATAATGAGATTTATTCCGTTTAGATGGCACAAAAAAATTCAAAAAGGAGCAAGCAATAGAGCAACATTGATGAGTTCTAGAGAAGGAAGAAAAATATTAAGATCCAGAAAAATAGGGTCCAAAATTCATTGAACGTTTCAGCTATCTAAAAATCAGTGCCGTTGACTTCCAGCCATTTTTTCTCGGTCCTTTTGAAAGATGTCAAAAATGGTCAATTAATAAAATATTTGTGTTGTTATGATAGGCAAAATGTTGATATTTTTCACAGGAGCCGAGAAAAATTGGCTCAAAGTAAACCACCCTTCAGACCCTTCAATAAGACTAAAATCATCATTGGTTATAACTTATATCAGACGTCCTGAAAACAGAGCTTCCAGGAATCTCAAAACCTTTTTCAACTATTCAAAGACATCCAGTGAAAACAACTCGATTGCTAGAAGTCCAAACCACAGGGGTAATTATTAGCAAGAAAATGAGGAAGACCTTGGAAACCTGAAACCAGTAATTTGCGGTTTAATTGTACTTTATAT</canonical>
            <polymorphic>ATTCAAGAATCTCTAACATTGAAAATTCTAAACATACCTGAATTTCCATCTCATCCATTTCTTGGAACAATCCATGAAGAACCACGAGACAACTCAAAATTGCTCCTAAAGAGCCAATTGTGGAGACAGCGGCCACTGCCTTTACCTCCCACAACATCTTCGGAATCCTCCAGATGACGAATTCTAGGCAAATTCAGAATATGTTCTCTTCCCAACAAAGTACCTCTATTTTATACTGCTACGGGTAACTGGTTATTTTCTTCACTCCTCCCTTTCGGTTTTGTAGAAGAGTGAATTAAAATGCATTTGCAAATTACGGAAGCGAAGGAAAAGAACTTCTTTGTGTCATTTTTCTTCGTTCCACGCTCTCTCTCTCTCTCTCTCTCTCTCAGTTGGTAGGCAAAAAACCATAAAATAAGAAATCCCATTTGATGGATATTCTTTTTGGCGGTTCTTCGCAGTGAAAACCAATAATGAGATTTATTCCGTTTAGATGGCAMAAAAAAATTCAAAAAGGAGCAAGCAATAGAGCAACATTGATGAGTTCTAGAGAAGGAAGAAAAATATTAAGATCCAGAAAAATAGGGTCCAAAATTCATTGAACGTTTCAGCTATCTAAAAATCAGTGCCGTTGACTTCCAGCCATTTTTTCTCGGTCCTTTTGAAAGATGTCAAAAATGGTCAATTAATAAAATATTTGTGTTGTTATGATAGGCAAAATGTTGATATTTTTCACAGGAGCCGAGAAAAATTGGCTCAAAGTAAACCACCCTTCAGACCCTTCAATAAGACTAAAATCATCATTGGTTATAACTTATATCAGACGTCCTGAAAACAGAGCTTCCAGGAATCTCAAAACCTTTTTCAACTATTCAAAGACATCCAGTGAAAACAACTCGATTGCTAGAAGTCCAAACCACAGGGGTAATTATTAGCAAGAAAATGAGGAAGACCTTGGAAACCTGAAACCAGTAATTTGCGGTTTAATTGTACTTTATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>129 119 113 100 84 81 74 52 38 36 34 33 31 29 18 16 13</canonical_bands>
                <polymorphic_bands>165 119 113 100 84 81 74 52 38 34 33 31 29 18 16 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTCTTTGTGTCATTTTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>ACCCTATTTTTCTGGATCTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ACTTCTTTGTGTCATTTTTCTTCGTTCCACGCTCTCTCTCTCTCTCTCTCTCTCTCAGTTGGTAGGCAAAAAACCATAAAATAAGAAATCCCATTTGATGGATATTCTTTTTGGCGGTTCTTCGCAGTGAAAACCAATAATGAGATTTATTCCGTTTAGATGGCACAAAAAAATTCAAAAAGGAGCAAGCAATAGAGCAACATTGATGAGTTCTAGAGAAGGAAGAAAAATATTAAGATCCAGAAAAATAGGGT</canonical_amplicon>
		<polymorphic_amplicon>ACTTCTTTGTGTCATTTTTCTTCGTTCCACGCTCTCTCTCTCTCTCTCTCTCTCTCAGTTGGTAGGCAAAAAACCATAAAATAAGAAATCCCATTTGATGGATATTCTTTTTGGCGGTTCTTCGCAGTGAAAACCAATAATGAGATTTATTCCGTTTAGATGGCAMAAAAAAATTCAAAAAGGAGCAAGCAATAGAGCAACATTGATGAGTTCTAGAGAAGGAAGAAAAATATTAAGATCCAGAAAAATAGGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22028</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>317960</contig_pos>
        <strand>+</strand>
        <context>AAATATCGTC[A/G]AATTAAAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAATTGAAACTTCAAAATATACAAATCATCTTTATTCAAAAATATCGTC</left_flank>
        <right_flank>AATTAAAACAAAAATTATTCAAGTCTCTCGACTATCCGTGGCTCCTTCTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTACTCCTAAGCTCCGCCCACTTCTATCCAGAACGTATAGAAGCGAAAAAACAGCTTTTCCAGTTTCGCAGCTTGCCAAACCCCAAAAAGACGCTTTGTATTTAAAGTTTTGTCTGGACTAAAAAAAAGAATAAAGATGCATTTGATTTATATCGAAATGGAAAAATACATTTCGCAGACTTATAGAAACTACTAGTTCACAAATTGAACAAAACTTGAGAAATTTACGGTAGTTTGTATTTCGTGGTGGGTCCCACTACGGACGGCCGAAAAATTAAAAGTTTACCAATTCAGACCATGTTTGGACTCATTTTGAAGCCCTCAACATATTCAAAAATTTAATTTCCAAGTTAAAAAATATACAGTACTTGATTTTGGAATTTTAGAAATTGGAATTTTTAACTCTCGATATTTTGGAATCTCGGAGCTTCGGAATCTCAAAATCTTGGAATTGAAACTTCAAAATATACAAATCATCTTTATTCAAAAATATCGTCGAATTAAAACAAAAATTATTCAAGTCTCTCGACTATCCGTGGCTCCTTCTTCTTTTCCCGAATCTCATGACTGGAGAAGACGAATGGAGAGTTGGCAAGAAGTGGAACAAATTTTCCCGATCCTGGAACGGTTTGGAGCTGCCCGTTAGCCCAAACAATGCGGCCTCTGAAAAATTTGAACTTTGAATTTTGAAAAACGTTTAAAGTTTTACCTGGAAATGGTGATTTCAGCAACACCGTGGCATTTGATTCCTTCGAAAATGTTAAAGTCTAGATTCTGTAAAAAAGAATTGTTTAAAATCTCCAACCCAAAAAACAAATTTCAGTCAAATTGATGACCTAACTTATCAAAGTTGTGTTTTCTAGGCCTTCTACAGCACTGGACGAAAATGCCAATTTCAAACTTTTTCGGGGAAAATCGTTATTTAACTTTGAAATCCTAAAAAAGTAATTCAGAATTTTTCGATTTTTCTGAAAATTCAAAGCATGCTACACAAAGCT</canonical>
            <polymorphic>GTTTACTCCTAAGCTCCGCCCACTTCTATCCAGAACGTATAGAAGCGAAAAAACAGCTTTTCCAGTTTCGCAGCTTGCCAAACCCCAAAAAGACGCTTTGTATTTAAAGTTTTGTCTGGACTAAAAAAAAGAATAAAGATGCATTTGATTTATATCGAAATGGAAAAATACATTTCGCAGACTTATAGAAACTACTAGTTCACAAATTGAACAAAACTTGAGAAATTTACGGTAGTTTGTATTTCGTGGTGGGTCCCACTACGGACGGCCGAAAAATTAAAAGTTTACCAATTCAGACCATGTTTGGACTCATTTTGAAGCCCTCAACATATTCAAAAATTTAATTTCCAAGTTAAAAAATATACAGTACTTGATTTTGGAATTTTAGAAATTGGAATTTTTAACTCTCGATATTTTGGAATCTCGGAGCTTCGGAATCTCAAAATCTTGGAATTGAAACTTCAAAATATACAAATCATCTTTATTCAAAAATATCGTCRAATTAAAACAAAAATTATTCAAGTCTCTCGACTATCCGTGGCTCCTTCTTCTTTTCCCGAATCTCATGACTGGAGAAGACGAATGGAGAGTTGGCAAGAAGTGGAACAAATTTTCCCGATCCTGGAACGGTTTGGAGCTGCCCGTTAGCCCAAACAATGCGGCCTCTGAAAAATTTGAACTTTGAATTTTGAAAAACGTTTAAAGTTTTACCTGGAAATGGTGATTTCAGCAACACCGTGGCATTTGATTCCTTCGAAAATGTTAAAGTCTAGATTCTGTAAAAAAGAATTGTTTAAAATCTCCAACCCAAAAAACAAATTTCAGTCAAATTGATGACCTAACTTATCAAAGTTGTGTTTTCTAGGCCTTCTACAGCACTGGACGAAAATGCCAATTTCAAACTTTTTCGGGGAAAATCGTTATTTAACTTTGAAATCCTAAAAAAGTAATTCAGAATTTTTCGATTTTTCTGAAAATTCAAAGCATGCTACACAAAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>253 226 208 156 90 37 30</canonical_bands>
                <polymorphic_bands>253 226 208 156 120 37</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTTCGCAGACTTATAGAAACT</pcr_primer_p1>
		<pcr_primer_p2>AGATTCGGGAAAAGAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>394</pcr_amplicon_size>
		<canonical_amplicon>CATTTCGCAGACTTATAGAAACTACTAGTTCACAAATTGAACAAAACTTGAGAAATTTACGGTAGTTTGTATTTCGTGGTGGGTCCCACTACGGACGGCCGAAAAATTAAAAGTTTACCAATTCAGACCATGTTTGGACTCATTTTGAAGCCCTCAACATATTCAAAAATTTAATTTCCAAGTTAAAAAATATACAGTACTTGATTTTGGAATTTTAGAAATTGGAATTTTTAACTCTCGATATTTTGGAATCTCGGAGCTTCGGAATCTCAAAATCTTGGAATTGAAACTTCAAAATATACAAATCATCTTTATTCAAAAATATCGTCGAATTAAAACAAAAATTATTCAAGTCTCTCGACTATCCGTGGCTCCTTCTTCTTTTCCCGAATCT</canonical_amplicon>
		<polymorphic_amplicon>CATTTCGCAGACTTATAGAAACTACTAGTTCACAAATTGAACAAAACTTGAGAAATTTACGGTAGTTTGTATTTCGTGGTGGGTCCCACTACGGACGGCCGAAAAATTAAAAGTTTACCAATTCAGACCATGTTTGGACTCATTTTGAAGCCCTCAACATATTCAAAAATTTAATTTCCAAGTTAAAAAATATACAGTACTTGATTTTGGAATTTTAGAAATTGGAATTTTTAACTCTCGATATTTTGGAATCTCGGAGCTTCGGAATCTCAAAATCTTGGAATTGAAACTTCAAAATATACAAATCATCTTTATTCAAAAATATCGTCRAATTAAAACAAAAATTATTCAAGTCTCTCGACTATCCGTGGCTCCTTCTTCTTTTCCCGAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22029</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>318155</contig_pos>
        <strand>+</strand>
        <context>AATTTTGAAA[A/T]ACGTTTAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAGCCCAAACAATGCGGCCTCTGAAAAATTTGAACTTTGAATTTTGAAA</left_flank>
        <right_flank>ACGTTTAAAGTTTTACCTGGAAATGGTGATTTCAGCAACACCGTGGCATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGTTCACAAATTGAACAAAACTTGAGAAATTTACGGTAGTTTGTATTTCGTGGTGGGTCCCACTACGGACGGCCGAAAAATTAAAAGTTTACCAATTCAGACCATGTTTGGACTCATTTTGAAGCCCTCAACATATTCAAAAATTTAATTTCCAAGTTAAAAAATATACAGTACTTGATTTTGGAATTTTAGAAATTGGAATTTTTAACTCTCGATATTTTGGAATCTCGGAGCTTCGGAATCTCAAAATCTTGGAATTGAAACTTCAAAATATACAAATCATCTTTATTCAAAAATATCGTCGAATTAAAACAAAAATTATTCAAGTCTCTCGACTATCCGTGGCTCCTTCTTCTTTTCCCGAATCTCATGACTGGAGAAGACGAATGGAGAGTTGGCAAGAAGTGGAACAAATTTTCCCGATCCTGGAACGGTTTGGAGCTGCCCGTTAGCCCAAACAATGCGGCCTCTGAAAAATTTGAACTTTGAATTTTGAAAAACGTTTAAAGTTTTACCTGGAAATGGTGATTTCAGCAACACCGTGGCATTTGATTCCTTCGAAAATGTTAAAGTCTAGATTCTGTAAAAAAGAATTGTTTAAAATCTCCAACCCAAAAAACAAATTTCAGTCAAATTGATGACCTAACTTATCAAAGTTGTGTTTTCTAGGCCTTCTACAGCACTGGACGAAAATGCCAATTTCAAACTTTTTCGGGGAAAATCGTTATTTAACTTTGAAATCCTAAAAAAGTAATTCAGAATTTTTCGATTTTTCTGAAAATTCAAAGCATGCTACACAAAGCTAGAGCTTCATTTTTGTAGTTGACCACTTTTTTCTAAAACTTCAGACTGGAGGGATATGCAGTAGCCAAAAAGTTCCACATGCTAGCACTGAAATGAGAGATGTTCCACTTTAACCTCGTATATCTCGCTTTGTTGAATTTGTACAAAACAGTTATCAACTACTGAATTGAAGCTTTGTTTTTTTTATTAGTATGG</canonical>
            <polymorphic>TAGTTCACAAATTGAACAAAACTTGAGAAATTTACGGTAGTTTGTATTTCGTGGTGGGTCCCACTACGGACGGCCGAAAAATTAAAAGTTTACCAATTCAGACCATGTTTGGACTCATTTTGAAGCCCTCAACATATTCAAAAATTTAATTTCCAAGTTAAAAAATATACAGTACTTGATTTTGGAATTTTAGAAATTGGAATTTTTAACTCTCGATATTTTGGAATCTCGGAGCTTCGGAATCTCAAAATCTTGGAATTGAAACTTCAAAATATACAAATCATCTTTATTCAAAAATATCGTCGAATTAAAACAAAAATTATTCAAGTCTCTCGACTATCCGTGGCTCCTTCTTCTTTTCCCGAATCTCATGACTGGAGAAGACGAATGGAGAGTTGGCAAGAAGTGGAACAAATTTTCCCGATCCTGGAACGGTTTGGAGCTGCCCGTTAGCCCAAACAATGCGGCCTCTGAAAAATTTGAACTTTGAATTTTGAAAWACGTTTAAAGTTTTACCTGGAAATGGTGATTTCAGCAACACCGTGGCATTTGATTCCTTCGAAAATGTTAAAGTCTAGATTCTGTAAAAAAGAATTGTTTAAAATCTCCAACCCAAAAAACAAATTTCAGTCAAATTGATGACCTAACTTATCAAAGTTGTGTTTTCTAGGCCTTCTACAGCACTGGACGAAAATGCCAATTTCAAACTTTTTCGGGGAAAATCGTTATTTAACTTTGAAATCCTAAAAAAGTAATTCAGAATTTTTCGATTTTTCTGAAAATTCAAAGCATGCTACACAAAGCTAGAGCTTCATTTTTGTAGTTGACCACTTTTTTCTAAAACTTCAGACTGGAGGGATATGCAGTAGCCAAAAAGTTCCACATGCTAGCACTGAAATGAGAGATGTTCCACTTTAACCTCGTATATCTCGCTTTGTTGAATTTGTACAAAACAGTTATCAACTACTGAATTGAAGCTTTGTTTTTTTTATTAGTATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATTCAAGTCTCTCGACTATCC</pcr_primer_p1>
		<pcr_primer_p2>ACATTTTCGAAGGAATCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTATTCAAGTCTCTCGACTATCCGTGGCTCCTTCTTCTTTTCCCGAATCTCATGACTGGAGAAGACGAATGGAGAGTTGGCAAGAAGTGGAACAAATTTTCCCGATCCTGGAACGGTTTGGAGCTGCCCGTTAGCCCAAACAATGCGGCCTCTGAAAAATTTGAACTTTGAATTTTGAAAAACGTTTAAAGTTTTACCTGGAAATGGTGATTTCAGCAACACCGTGGCATTTGATTCCTTCGAAAATGT</canonical_amplicon>
		<polymorphic_amplicon>TTATTCAAGTCTCTCGACTATCCGTGGCTCCTTCTTCTTTTCCCGAATCTCATGACTGGAGAAGACGAATGGAGAGTTGGCAAGAAGTGGAACAAATTTTCCCGATCCTGGAACGGTTTGGAGCTGCCCGTTAGCCCAAACAATGCGGCCTCTGAAAAATTTGAACTTTGAATTTTGAAAWACGTTTAAAGTTTTACCTGGAAATGGTGATTTCAGCAACACCGTGGCATTTGATTCCTTCGAAAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22030</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>319801</contig_pos>
        <strand>+</strand>
        <context>TTATTTCTAT[A/T]TGAaaatctt</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAAAAATTAACTCAAAGTAGAAAGTTCGTGAATTTCCACTTATTTCTAT</left_flank>
        <right_flank>TGAAAATCTTCAAATTTGGAGTTCTAAAAAGTATTTAGAAATTGTTCAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCGGAGACATGACATATCGGGCAGCATGAAGCCAGTCTTCATTATAATAATGGGAACCATCAAGTGCCAAACCAGCAGCAATTGGTTCTCCAAAAACGATGGATCCTTGAGCACGATGGTGGGAGATAGCCGCGGCTGCTCCCTTGGTCATAACGTGAACGATGTAGACTGGACAGTTAGCTTGAGCTGCGAGCACACATGCACGGTTTGTAGCTTCGGCTTCAATCTAAATTTGAGACCGACTAGTTTAACTTTTGCTAGGTGAGAGGAGCAGACAACGATACACACCAACTATCTGCGTCTCTTCAAAAATCAGTCGATAACTTTGAGCCGATTTGTCTCGGTCCCTGTAAGAACTGTCAAAAAGTGGTCCACTGACAAATTTTTTTTGAAATTCTGATAAACACTTTGTCAGTCGACTACTTCTTGATAACTCGCACAGAAAACGAGAAAAATTAACTCAAAGTAGAAAGTTCGTGAATTTCCACTTATTTCTATTTGAAAATCTTCAAATTTGGAGTTCTAAAAAGTATTTAGAAATTGTTCAATTAGTTTCAAAATTTTTGAGTGTATTATTCAAAACTAGAGCTTCAACTTTGCAATAGACATTCTTTCTTAATTTTCAACCTGAAGAGTTATGGCTTATGGAAATGACCCTTCATTTTTAAGATCGAAAAGTAGAAGGGCTTCTTCCACATGGCACAGACTGAAATTTTACATGAAAGTTGTCAATTACAATAGAAAAGCTCCAGTTGTTTTTAGTATACTCAGAAATTTTCAGATTTATTTAACCAGATTAACTATAGTTTAAAGTCATGCGTACCTCTTCCGGTCGACTCTGTGTATGGCCTTCTGGTCCGGTGACTCCTTTGGCCAATAAGTCGATTTCCCTCTCTTTGATCACAGATCCGTTTTCAGCATGAACTCTAGCCAGTGCTCTTAATTTAGCACATTCTTGCATTGCTCGGTACATTTCGTCATCTCGAACCATTAGAGTTC</canonical>
            <polymorphic>GGCGGAGACATGACATATCGGGCAGCATGAAGCCAGTCTTCATTATAATAATGGGAACCATCAAGTGCCAAACCAGCAGCAATTGGTTCTCCAAAAACGATGGATCCTTGAGCACGATGGTGGGAGATAGCCGCGGCTGCTCCCTTGGTCATAACGTGAACGATGTAGACTGGACAGTTAGCTTGAGCTGCGAGCACACATGCACGGTTTGTAGCTTCGGCTTCAATCTAAATTTGAGACCGACTAGTTTAACTTTTGCTAGGTGAGAGGAGCAGACAACGATACACACCAACTATCTGCGTCTCTTCAAAAATCAGTCGATAACTTTGAGCCGATTTGTCTCGGTCCCTGTAAGAACTGTCAAAAAGTGGTCCACTGACAAATTTTTTTTGAAATTCTGATAAACACTTTGTCAGTCGACTACTTCTTGATAACTCGCACAGAAAACGAGAAAAATTAACTCAAAGTAGAAAGTTCGTGAATTTCCACTTATTTCTATWTGAAAATCTTCAAATTTGGAGTTCTAAAAAGTATTTAGAAATTGTTCAATTAGTTTCAAAATTTTTGAGTGTATTATTCAAAACTAGAGCTTCAACTTTGCAATAGACATTCTTTCTTAATTTTCAACCTGAAGAGTTATGGCTTATGGAAATGACCCTTCATTTTTAAGATCGAAAAGTAGAAGGGCTTCTTCCACATGGCACAGACTGAAATTTTACATGAAAGTTGTCAATTACAATAGAAAAGCTCCAGTTGTTTTTAGTATACTCAGAAATTTTCAGATTTATTTAACCAGATTAACTATAGTTTAAAGTCATGCGTACCTCTTCCGGTCGACTCTGTGTATGGCCTTCTGGTCCGGTGACTCCTTTGGCCAATAAGTCGATTTCCCTCTCTTTGATCACAGATCCGTTTTCAGCATGAACTCTAGCCAGTGCTCTTAATTTAGCACATTCTTGCATTGCTCGGTACATTTCGTCATCTCGAACCATTAGAGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGTCTCTTCAAAAATCAGT</pcr_primer_p1>
		<pcr_primer_p2>GAAGAGGTACGCATGACTTTA</pcr_primer_p2>
		<pcr_amplicon_size>532</pcr_amplicon_size>
		<canonical_amplicon>GCGTCTCTTCAAAAATCAGTCGATAACTTTGAGCCGATTTGTCTCGGTCCCTGTAAGAACTGTCAAAAAGTGGTCCACTGACAAATTTTTTTTGAAATTCTGATAAACACTTTGTCAGTCGACTACTTCTTGATAACTCGCACAGAAAACGAGAAAAATTAACTCAAAGTAGAAAGTTCGTGAATTTCCACTTATTTCTATTTGAAAATCTTCAAATTTGGAGTTCTAAAAAGTATTTAGAAATTGTTCAATTAGTTTCAAAATTTTTGAGTGTATTATTCAAAACTAGAGCTTCAACTTTGCAATAGACATTCTTTCTTAATTTTCAACCTGAAGAGTTATGGCTTATGGAAATGACCCTTCATTTTTAAGATCGAAAAGTAGAAGGGCTTCTTCCACATGGCACAGACTGAAATTTTACATGAAAGTTGTCAATTACAATAGAAAAGCTCCAGTTGTTTTTAGTATACTCAGAAATTTTCAGATTTATTTAACCAGATTAACTATAGTTTAAAGTCATGCGTACCTCTTC</canonical_amplicon>
		<polymorphic_amplicon>GCGTCTCTTCAAAAATCAGTCGATAACTTTGAGCCGATTTGTCTCGGTCCCTGTAAGAACTGTCAAAAAGTGGTCCACTGACAAATTTTTTTTGAAATTCTGATAAACACTTTGTCAGTCGACTACTTCTTGATAACTCGCACAGAAAACGAGAAAAATTAACTCAAAGTAGAAAGTTCGTGAATTTCCACTTATTTCTATWTGAAAATCTTCAAATTTGGAGTTCTAAAAAGTATTTAGAAATTGTTCAATTAGTTTCAAAATTTTTGAGTGTATTATTCAAAACTAGAGCTTCAACTTTGCAATAGACATTCTTTCTTAATTTTCAACCTGAAGAGTTATGGCTTATGGAAATGACCCTTCATTTTTAAGATCGAAAAGTAGAAGGGCTTCTTCCACATGGCACAGACTGAAATTTTACATGAAAGTTGTCAATTACAATAGAAAAGCTCCAGTTGTTTTTAGTATACTCAGAAATTTTCAGATTTATTTAACCAGATTAACTATAGTTTAAAGTCATGCGTACCTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22031</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>359204</contig_pos>
        <strand>+</strand>
        <context>TTTGGAAATT[A/G]TACAAACAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAAATGGCTTGAAGGTTTAGAAGATTGAAAATGAAATTTTGGAAATT</left_flank>
        <right_flank>TACAAACAATTTACGGTGGTGGTGTTCGCAAAAAATTAATGCATACAGTA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGTGACTTTTTGAAATTCAATAAAAAATATACATTTTCCACCCAAAAAACGACTATACTCATTAGTCAGGGTGGCAATTGGAAACTAGAGATCATTGAGATTGAAGAAACGCAGAGAATTAAAGAAAAGGTCAGAATTAATTTTTTGAAAAAATTGATGGACAGAGGGACAGAAACTGGTTATGAGGTGACAAAATGTATGAGGGAAAAGGAAAGTTTTCTGAACTATAAAAAAAAGGACTTTGTGTAATGGAAATGATAAAGGAGGTTGGAAGGAGGAGGAGACAATTGGCTAATGGATTCTGAACCACGTGGATAGGAGGTCACTTCTTATAGGGGAAAAGGAAACTAGTTCAGCAAAAAGAAACGAACTGTTTTCTTATGATATCTAGAAATTTCGAGAGAACTTATGAGTCATCTGAAATTTAGAAATCCTATGAATCAATGCGAAAAAAATGGCTTGAAGGTTTAGAAGATTGAAAATGAAATTTTGGAAATTGTACAAACAATTTACGGTGGTGGTGTTCGCAAAAAATTAATGCATACAGTAATCCAATTCTGCAAACACCACAACGTCAAAATGCGGACTGAACGCTTTACCGTAAGCACTCTCAAACCGTTAACTTTGAGCCAATTTATCTCGGTTTCTGTGAAAGATATCAAACAGTGACCAACTGATAAAATATAGGTGATATTATGATAAACATTTTGTCAGTTGACCACTTTTCGGCATCTTTAACAGGGAAAGAGATAACTCAAAGGTGACGGCTTCGGACATTTAATTAGAGTTTACAGTAATCTAAGCGACAGATTCAAATGTCGAAATCTTTCAGTTTGTAGAAAATTTCGGCAACTTGAAATATAAAAAATTAACCGATCTTAAAGATTATATACTGTAAATCTAAAGACATTCTAGACCAAAAACTGTAAATTTTCGAAAAGTGTTCCAACACAATTACCACCCACTTCATTTAACCAGGAAATTTGACTGTAATTCGAG</canonical>
            <polymorphic>CGGTGACTTTTTGAAATTCAATAAAAAATATACATTTTCCACCCAAAAAACGACTATACTCATTAGTCAGGGTGGCAATTGGAAACTAGAGATCATTGAGATTGAAGAAACGCAGAGAATTAAAGAAAAGGTCAGAATTAATTTTTTGAAAAAATTGATGGACAGAGGGACAGAAACTGGTTATGAGGTGACAAAATGTATGAGGGAAAAGGAAAGTTTTCTGAACTATAAAAAAAAGGACTTTGTGTAATGGAAATGATAAAGGAGGTTGGAAGGAGGAGGAGACAATTGGCTAATGGATTCTGAACCACGTGGATAGGAGGTCACTTCTTATAGGGGAAAAGGAAACTAGTTCAGCAAAAAGAAACGAACTGTTTTCTTATGATATCTAGAAATTTCGAGAGAACTTATGAGTCATCTGAAATTTAGAAATCCTATGAATCAATGCGAAAAAAATGGCTTGAAGGTTTAGAAGATTGAAAATGAAATTTTGGAAATTRTACAAACAATTTACGGTGGTGGTGTTCGCAAAAAATTAATGCATACAGTAATCCAATTCTGCAAACACCACAACGTCAAAATGCGGACTGAACGCTTTACCGTAAGCACTCTCAAACCGTTAACTTTGAGCCAATTTATCTCGGTTTCTGTGAAAGATATCAAACAGTGACCAACTGATAAAATATAGGTGATATTATGATAAACATTTTGTCAGTTGACCACTTTTCGGCATCTTTAACAGGGAAAGAGATAACTCAAAGGTGACGGCTTCGGACATTTAATTAGAGTTTACAGTAATCTAAGCGACAGATTCAAATGTCGAAATCTTTCAGTTTGTAGAAAATTTCGGCAACTTGAAATATAAAAAATTAACCGATCTTAAAGATTATATACTGTAAATCTAAAGACATTCTAGACCAAAAACTGTAAATTTTCGAAAAGTGTTCCAACACAATTACCACCCACTTCATTTAACCAGGAAATTTGACTGTAATTCGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGTACA</site>
                <isoschizomers>
                    <enzyme>AauI</enzyme>
                    <enzyme>Bsp1407I</enzyme>
                    <enzyme>BsrGI</enzyme>
                    <enzyme>SspBI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTATAGGGGAAAAGGAAACTA</pcr_primer_p1>
		<pcr_primer_p2>TTTGCAGAATTGGATTACTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>TCTTATAGGGGAAAAGGAAACTAGTTCAGCAAAAAGAAACGAACTGTTTTCTTATGATATCTAGAAATTTCGAGAGAACTTATGAGTCATCTGAAATTTAGAAATCCTATGAATCAATGCGAAAAAAATGGCTTGAAGGTTTAGAAGATTGAAAATGAAATTTTGGAAATTGTACAAACAATTTACGGTGGTGGTGTTCGCAAAAAATTAATGCATACAGTAATCCAATTCTGCAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTATAGGGGAAAAGGAAACTAGTTCAGCAAAAAGAAACGAACTGTTTTCTTATGATATCTAGAAATTTCGAGAGAACTTATGAGTCATCTGAAATTTAGAAATCCTATGAATCAATGCGAAAAAAATGGCTTGAAGGTTTAGAAGATTGAAAATGAAATTTTGGAAATTRTACAAACAATTTACGGTGGTGGTGTTCGCAAAAAATTAATGCATACAGTAATCCAATTCTGCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22032</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>362912</contig_pos>
        <strand></strand>
        <context>CCTGCTAGGT[A/G]AAGACCCACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTGCTTCTACTGGCCTAAGAAATTCTAGTCCACGGGAACCTGCTAGGT</left_flank>
        <right_flank>AAGACCCACTGGAGAAGGTGGCCTAAAAAAGTTTCTGAAAAGTTTCTAGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTCGACAAGATTGAGCTACGGTTTTCAGTGCCAAAGACACCCTAGGGTGGTTCAAACTCAATTTCCCGTAGTTGAACTAGGCACACGAATGGATTGATTTCTACCCAGACTTGAATCCAATAAATTTTTCATTTTTAGGGTATTGAACCCAGATAGTTTCTTCATGAAAATACAAAAACTTCTGATGACCCCCCTTCAGAAGATATGGGCACAAAAAGGTCGAAAATACCTCCGTGCCGTGGTTCCCTCTTTTCCGAAGCTTCTGAAGGCTGTCGTCAGAGTGAAATAAAGTGTATTTGAAAACTTTTGCATTATTATAAATTTTGTGCGTCTGAAATTATTTTATCCAAAATTTTGAAAATTTTCATCGAGTTTTAGGAGAGTTATGAAGGCTTGGATCGGTGTCAATAATTAATAGCCACCCTGTAAACAAAAGATCAAATTTCCTATTGCTTCTACTGGCCTAAGAAATTCTAGTCCACGGGAACCTGCTAGGTAAAGACCCACTGGAGAAGGTGGCCTAAAAAAGTTTCTGAAAAGTTTCTAGGCCCTTACATACGTCAAACTACAAACGATTGTGTACAAATCATCTGAAGCGATGACTCATTTCGTTTTTTAAAACATGATGCATCTGAATTTTGTCAAATCGATACAAAAAACCAATTTTCCAGGTCATCGGGTATCAAAATCATATCGAAAACTAAATAAGAGACAGAGAAAGAAGTGTCACTATGAATTTCAATCAAAATTCTATTTTCTCGCGCCTTTTGACTGCGATAACGGCTTCAAGTATTCAGAAGAGACATGACGTCATTTGCAATTCTTTTTCTAAAAAAGTTTGAGAAAAAATCTGGAATTTTCAGAGAAAGCGGATCCTGGTGGTATTCGTTGTGTGGAGGCGGATGTGTTGTGTTTTAAAAACATTTTTATATTTTTGAAATTTTTTTCAATAAAAAAAAATGAAATAGAATTTTCTGGAAAAAGAACAATGACAGCTG</canonical>
            <polymorphic>GTTTCGACAAGATTGAGCTACGGTTTTCAGTGCCAAAGACACCCTAGGGTGGTTCAAACTCAATTTCCCGTAGTTGAACTAGGCACACGAATGGATTGATTTCTACCCAGACTTGAATCCAATAAATTTTTCATTTTTAGGGTATTGAACCCAGATAGTTTCTTCATGAAAATACAAAAACTTCTGATGACCCCCCTTCAGAAGATATGGGCACAAAAAGGTCGAAAATACCTCCGTGCCGTGGTTCCCTCTTTTCCGAAGCTTCTGAAGGCTGTCGTCAGAGTGAAATAAAGTGTATTTGAAAACTTTTGCATTATTATAAATTTTGTGCGTCTGAAATTATTTTATCCAAAATTTTGAAAATTTTCATCGAGTTTTAGGAGAGTTATGAAGGCTTGGATCGGTGTCAATAATTAATAGCCACCCTGTAAACAAAAGATCAAATTTCCTATTGCTTCTACTGGCCTAAGAAATTCTAGTCCACGGGAACCTGCTAGGTRAAGACCCACTGGAGAAGGTGGCCTAAAAAAGTTTCTGAAAAGTTTCTAGGCCCTTACATACGTCAAACTACAAACGATTGTGTACAAATCATCTGAAGCGATGACTCATTTCGTTTTTTAAAACATGATGCATCTGAATTTTGTCAAATCGATACAAAAAACCAATTTTCCAGGTCATCGGGTATCAAAATCATATCGAAAACTAAATAAGAGACAGAGAAAGAAGTGTCACTATGAATTTCAATCAAAATTCTATTTTCTCGCGCCTTTTGACTGCGATAACGGCTTCAAGTATTCAGAAGAGACATGACGTCATTTGCAATTCTTTTTCTAAAAAAGTTTGAGAAAAAATCTGGAATTTTCAGAGAAAGCGGATCCTGGTGGTATTCGTTGTGTGGAGGCGGATGTGTTGTGTTTTAAAAACATTTTTATATTTTTGAAATTTTTTTCAATAAAAAAAAATGAAATAGAATTTTCTGGAAAAAGAACAATGACAGCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTGCTTCTACTGGCCTAAG</pcr_primer_p1>
		<pcr_primer_p2>ATATGATTTTGATACCCGATGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTATTGCTTCTACTGGCCTAAGAAATTCTAGTCCACGGGAACCTGCTAGGTAAAGACCCACTGGAGAAGGTGGCCTAAAAAAGTTTCTGAAAAGTTTCTAGGCCCTTACATACGTCAAACTACAAACGATTGTGTACAAATCATCTGAAGCGATGACTCATTTCGTTTTTTAAAACATGATGCATCTGAATTTTGTCAAATCGATACAAAAAACCAATTTTCCAGGTCATCGGGTATCAAAATCATAT</canonical_amplicon>
		<polymorphic_amplicon>CTATTGCTTCTACTGGCCTAAGAAATTCTAGTCCACGGGAACCTGCTAGGTRAAGACCCACTGGAGAAGGTGGCCTAAAAAAGTTTCTGAAAAGTTTCTAGGCCCTTACATACGTCAAACTACAAACGATTGTGTACAAATCATCTGAAGCGATGACTCATTTCGTTTTTTAAAACATGATGCATCTGAATTTTGTCAAATCGATACAAAAAACCAATTTTCCAGGTCATCGGGTATCAAAATCATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22033</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>401803</contig_pos>
        <strand>+</strand>
        <context>TTGAAAGCTT[C/T]GAATTTCGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTAAGATTTCGTGTACAGCCCTGCCCGGAAAGGAATATTTGAAAGCTT</left_flank>
        <right_flank>GAATTTCGCAAGTTTCCCAAAGATATGTCATTTCTATAACTATGTAAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGAAATTTTAAAGCATAAATTGATTTTTTAAAATTTAAATTGGATTTTTTAAACTTTGAAATAACAACTAGTCTGGAAAATTTTTGAAGACATTTCTTTAAAAAATTTAAGGTTCATAATCCAGGAATTTGCGAATTTCAAAATTTCAGAACCATTTTCAGATGTTTCCAGATTTACAGATTACCATAAAGTGTGAATATCAGATTTTACGCAAGTTCTAAAAATAAAGATACTCCAAAATCATTGAATTTGTGAAACAAACGTTTTCATAATTTTCGTGAAATCGGATTTTCCGAACAGTCCGATGTTTTTGATTTTTAGAATATTCGGAGTCAAAAAACCGATAATTGTAAGAATGACAGAAAAAGTTTCCAGCTTAATACCTTAAAATTTTTATTCTGGTCAAACTTTCATTTAGAAAACTTTTGAAGTTTTCGAACTTTCCGGAATTAAGATTTCGTGTACAGCCCTGCCCGGAAAGGAATATTTGAAAGCTTCGAATTTCGCAAGTTTCCCAAAGATATGTCATTTCTATAACTATGTAAAAACCTGATCCCTATGATCCACAACTTTCTGCCAAGACAATTTCTATGGTCCCCGGAGAATCTCTGGTTTACGTCACATTGTTTTTCAGCCTGTTGTTTAGAGATCACCAAAATTATGAAGGAACCAAAAACTAGAAGATCTCTTATTTTTCAATAAATGCAGACATCAAAGTACTCATAGGAACAAAACGAGACAAATTAATATCCTCTTTCTTTTTGAAATTCTTCGAAATCCAATTTTTCACAGATCAACGCTTTTTATTCGTAATGGACTACGTGCGTTTCACATGAAACGGATATTGGATATACTTAAAGGTTTTCTGAAAAGTTCCTTTTTTCAGAAAGTCTGAAAATTTGGATTTTGAACTCTGACCAATTTTTATTAATTCCAAATGTTTTGGTTATGCGTGAAATTTGGATTTTTTTTGGCATTTTTTGCACTTGTAAAGTTTT</canonical>
            <polymorphic>ATTGAAATTTTAAAGCATAAATTGATTTTTTAAAATTTAAATTGGATTTTTTAAACTTTGAAATAACAACTAGTCTGGAAAATTTTTGAAGACATTTCTTTAAAAAATTTAAGGTTCATAATCCAGGAATTTGCGAATTTCAAAATTTCAGAACCATTTTCAGATGTTTCCAGATTTACAGATTACCATAAAGTGTGAATATCAGATTTTACGCAAGTTCTAAAAATAAAGATACTCCAAAATCATTGAATTTGTGAAACAAACGTTTTCATAATTTTCGTGAAATCGGATTTTCCGAACAGTCCGATGTTTTTGATTTTTAGAATATTCGGAGTCAAAAAACCGATAATTGTAAGAATGACAGAAAAAGTTTCCAGCTTAATACCTTAAAATTTTTATTCTGGTCAAACTTTCATTTAGAAAACTTTTGAAGTTTTCGAACTTTCCGGAATTAAGATTTCGTGTACAGCCCTGCCCGGAAAGGAATATTTGAAAGCTTYGAATTTCGCAAGTTTCCCAAAGATATGTCATTTCTATAACTATGTAAAAACCTGATCCCTATGATCCACAACTTTCTGCCAAGACAATTTCTATGGTCCCCGGAGAATCTCTGGTTTACGTCACATTGTTTTTCAGCCTGTTGTTTAGAGATCACCAAAATTATGAAGGAACCAAAAACTAGAAGATCTCTTATTTTTCAATAAATGCAGACATCAAAGTACTCATAGGAACAAAACGAGACAAATTAATATCCTCTTTCTTTTTGAAATTCTTCGAAATCCAATTTTTCACAGATCAACGCTTTTTATTCGTAATGGACTACGTGCGTTTCACATGAAACGGATATTGGATATACTTAAAGGTTTTCTGAAAAGTTCCTTTTTTCAGAAAGTCTGAAAATTTGGATTTTGAACTCTGACCAATTTTTATTAATTCCAAATGTTTTGGTTATGCGTGAAATTTGGATTTTTTTTGGCATTTTTTGCACTTGTAAAGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>437 275 226 62</canonical_bands>
                <polymorphic_bands>437 337 226</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>438 275 225 62</canonical_bands>
                <polymorphic_bands>438 337 225</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTAGAATATTCGGAGTCAAA</pcr_primer_p1>
		<pcr_primer_p2>CATAGGGATCAGGTTTTTACATA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTTTAGAATATTCGGAGTCAAAAAACCGATAATTGTAAGAATGACAGAAAAAGTTTCCAGCTTAATACCTTAAAATTTTTATTCTGGTCAAACTTTCATTTAGAAAACTTTTGAAGTTTTCGAACTTTCCGGAATTAAGATTTCGTGTACAGCCCTGCCCGGAAAGGAATATTTGAAAGCTTCGAATTTCGCAAGTTTCCCAAAGATATGTCATTTCTATAACTATGTAAAAACCTGATCCCTATG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTAGAATATTCGGAGTCAAAAAACCGATAATTGTAAGAATGACAGAAAAAGTTTCCAGCTTAATACCTTAAAATTTTTATTCTGGTCAAACTTTCATTTAGAAAACTTTTGAAGTTTTCGAACTTTCCGGAATTAAGATTTCGTGTACAGCCCTGCCCGGAAAGGAATATTTGAAAGCTTYGAATTTCGCAAGTTTCCCAAAGATATGTCATTTCTATAACTATGTAAAAACCTGATCCCTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22034</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>403501</contig_pos>
        <strand>+</strand>
        <context>GAAGAAAAAA[G/T]AAAAATTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCTTTTCAACATATCATATATTTGTGGTATGTGTTTAGCGGAAGAAAAAA</left_flank>
        <right_flank>AAAAATTGAAACGAGGAAGCTTTGAAATTTGAAATCGCAGAGTAGCCATA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAGCTCGAAGTTGATAGTTTGAGCCATTCTATTACAGGTTTTATAATATTTCTCTCCTTCAATTTTCAAAATTATGTTTGCAGATTGTTCAAATCCCCATTTTCCAAAAAAAAAATGAACCTATTTCTAAGCACTGACTCCAACCGTTTCGTGCCACTCATCAACGGCTACTTCAATTTCTATGTCCTCTTTGGTCTCATTTTCCAACTATTTCTCATTTTTCTAATCATCACCAAATCACCACACAATCTGAAAGACCTGAAGATGTTTCTATACAATACGACTTGGTGTCAGATAGCAAACATTCTGGCCGCTTATTTTATACAATACCGGTATCTTTTTATTTGACCCCTCTTTTCTTTATATTTCTCTTCAGGGCGTTACCCAACTCGACGACGATGGCGGTTCTGGCATCGGGGTTTTGTAGGAAGTTCGGACCGGATGTGTGCTTTTCAACATATCATATATTTGTGGTATGTGTTTAGCGGAAGAAAAAATAAAAATTGAAACGAGGAAGCTTTGAAATTTGAAATCGCAGAGTAGCCATAATGCTCTAATATAGGCCCGCTCTGAGCTAATTTATTTCGGCTCCTGCAAGAGATATCAAGAATTTATTGTCTGATAGAATATTGGTGATTCTGTGATAAATACTTTATCAGTTGACTACTTTTTTAATTCTATTGGAGGCGCCGAGATAGTTGAGCTCAAAGTGCTCGAAAAAGGGGCTTCTAGTAGAGCAATAACTCGGTTTAAACATGGAATTTCTGCTTGAATTTAAAAAGTAAAATGAATAACTTAAAGAGATCTACAAAATGATATATGATATAACTGATTTAGGAATGTCGTGTTTTCCTCGCTAGCGCTAATCAGACCTATTTTTTTGGAATTCAAACCTGTAAAGCCTGTCAAAGAAAGATCCTCTATCTAATTCTCGAAATTCTCGATATTGATGAAACAAATTCATTCCAGGGCATCAGTTCAAGTGTCGCCATGTCCAT</canonical>
            <polymorphic>ATTAGCTCGAAGTTGATAGTTTGAGCCATTCTATTACAGGTTTTATAATATTTCTCTCCTTCAATTTTCAAAATTATGTTTGCAGATTGTTCAAATCCCCATTTTCCAAAAAAAAAATGAACCTATTTCTAAGCACTGACTCCAACCGTTTCGTGCCACTCATCAACGGCTACTTCAATTTCTATGTCCTCTTTGGTCTCATTTTCCAACTATTTCTCATTTTTCTAATCATCACCAAATCACCACACAATCTGAAAGACCTGAAGATGTTTCTATACAATACGACTTGGTGTCAGATAGCAAACATTCTGGCCGCTTATTTTATACAATACCGGTATCTTTTTATTTGACCCCTCTTTTCTTTATATTTCTCTTCAGGGCGTTACCCAACTCGACGACGATGGCGGTTCTGGCATCGGGGTTTTGTAGGAAGTTCGGACCGGATGTGTGCTTTTCAACATATCATATATTTGTGGTATGTGTTTAGCGGAAGAAAAAAKAAAAATTGAAACGAGGAAGCTTTGAAATTTGAAATCGCAGAGTAGCCATAATGCTCTAATATAGGCCCGCTCTGAGCTAATTTATTTCGGCTCCTGCAAGAGATATCAAGAATTTATTGTCTGATAGAATATTGGTGATTCTGTGATAAATACTTTATCAGTTGACTACTTTTTTAATTCTATTGGAGGCGCCGAGATAGTTGAGCTCAAAGTGCTCGAAAAAGGGGCTTCTAGTAGAGCAATAACTCGGTTTAAACATGGAATTTCTGCTTGAATTTAAAAAGTAAAATGAATAACTTAAAGAGATCTACAAAATGATATATGATATAACTGATTTAGGAATGTCGTGTTTTCCTCGCTAGCGCTAATCAGACCTATTTTTTTGGAATTCAAACCTGTAAAGCCTGTCAAAGAAAGATCCTCTATCTAATTCTCGAAATTCTCGATATTGATGAAACAAATTCATTCCAGGGCATCAGTTCAAGTGTCGCCATGTCCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCTTTTTATTTGACCCCTCTT</pcr_primer_p1>
		<pcr_primer_p2>GGCCTATATTAGAGCATTATGG</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>TATCTTTTTATTTGACCCCTCTTTTCTTTATATTTCTCTTCAGGGCGTTACCCAACTCGACGACGATGGCGGTTCTGGCATCGGGGTTTTGTAGGAAGTTCGGACCGGATGTGTGCTTTTCAACATATCATATATTTGTGGTATGTGTTTAGCGGAAGAAAAAATAAAAATTGAAACGAGGAAGCTTTGAAATTTGAAATCGCAGAGTAGCCATAATGCTCTAATATAGGCC</canonical_amplicon>
		<polymorphic_amplicon>TATCTTTTTATTTGACCCCTCTTTTCTTTATATTTCTCTTCAGGGCGTTACCCAACTCGACGACGATGGCGGTTCTGGCATCGGGGTTTTGTAGGAAGTTCGGACCGGATGTGTGCTTTTCAACATATCATATATTTGTGGTATGTGTTTAGCGGAAGAAAAAAKAAAAATTGAAACGAGGAAGCTTTGAAATTTGAAATCGCAGAGTAGCCATAATGCTCTAATATAGGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22038</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>410924</contig_pos>
        <strand>+</strand>
        <context>GAGAAGACTT[G/T]TGGAAAGGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTTTTTTTAACTTTGACTCGAAATTTTGAAACAAAATGAGAGAAGACTT</left_flank>
        <right_flank>TGGAAAGGGAGGAGGAGTGTGTTGTTCCACACCGGTGTAAATGTCGTGTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTTTCAACGCCTTCTGACCTAAAAACCTTGAATTTTATTTCGTGGCCTAATTTTTTGAAAATTATAATTCCTAGTCCGGCAAGTTAGCCACGGAGGGAAATGTAGATTTTCGAATTATGTGATTATATCCAAATCTCAAAGAGAATTTTCCGCATGTTTCAATTCGAGGCCTAGAAAACCTAAAATCAACATTTTTGCCCTAGTTTTCAAAAATTTATATTTTTAAGAAACCTATTTTTGAAGAAAGTTGAACCCATACTTTTGAATTTCCACTGAAACTTTCTGGAATTTTTTCCTAAACCGTAATGGCCTAGTTTTGTTTTCCTATGCCACAAAAACTCACACAAACTGCATAACGAGAGCAGCGACAAAAAACAAGAAGGAGAAGAAGAAAACGACAGAAAGAATTGATGGAATCACTCGTGGGAGCATGTCCTGTTTCTTCCTCTTTTTTTAACTTTGACTCGAAATTTTGAAACAAAATGAGAGAAGACTTTTGGAAAGGGAGGAGGAGTGTGTTGTTCCACACCGGTGTAAATGTCGTGTCTCATTCTCCCTAATCGTTCCTTTCAATCTGAACTTGAGACAATTCGGGAAGGGATCCAATGACACTGTCTTTGATTCGGTAGATCTAGGGGGGAAAGTTATTCATTTTAATTTTTGCCAGAGAGTTTCAAAAAAAACCGAGAAATCAAAATCGGGTAATAATTTAACAGAAAATGGGCGGGAGGAAAAGTGGGAGAGATAGACAGTTAATATAAGTTACTAGATACTTTTGTTTGGCTGATAAAAATGATAGCGGATGTGGGGGTGGACGGGGCAAAAAAACGATCCGTGGTTTATGAAGCTGCAATTGGCGGATAAAAGACAAAACACGAAATCTGGAGATAAGGGGAGGAGACGCAGAGAGAGAAACATAATTAGAGAAATTTCAGATAGCGATGGCGAACACGTAGACGATTGCCAGCATTGTCTTCGCTTCCCATCGATACATGTA</canonical>
            <polymorphic>CTTTTTTCAACGCCTTCTGACCTAAAAACCTTGAATTTTATTTCGTGGCCTAATTTTTTGAAAATTATAATTCCTAGTCCGGCAAGTTAGCCACGGAGGGAAATGTAGATTTTCGAATTATGTGATTATATCCAAATCTCAAAGAGAATTTTCCGCATGTTTCAATTCGAGGCCTAGAAAACCTAAAATCAACATTTTTGCCCTAGTTTTCAAAAATTTATATTTTTAAGAAACCTATTTTTGAAGAAAGTTGAACCCATACTTTTGAATTTCCACTGAAACTTTCTGGAATTTTTTCCTAAACCGTAATGGCCTAGTTTTGTTTTCCTATGCCACAAAAACTCACACAAACTGCATAACGAGAGCAGCGACAAAAAACAAGAAGGAGAAGAAGAAAACGACAGAAAGAATTGATGGAATCACTCGTGGGAGCATGTCCTGTTTCTTCCTCTTTTTTTAACTTTGACTCGAAATTTTGAAACAAAATGAGAGAAGACTTKTGGAAAGGGAGGAGGAGTGTGTTGTTCCACACCGGTGTAAATGTCGTGTCTCATTCTCCCTAATCGTTCCTTTCAATCTGAACTTGAGACAATTCGGGAAGGGATCCAATGACACTGTCTTTGATTCGGTAGATCTAGGGGGGAAAGTTATTCATTTTAATTTTTGCCAGAGAGTTTCAAAAAAAACCGAGAAATCAAAATCGGGTAATAATTTAACAGAAAATGGGCGGGAGGAAAAGTGGGAGAGATAGACAGTTAATATAAGTTACTAGATACTTTTGTTTGGCTGATAAAAATGATAGCGGATGTGGGGGTGGACGGGGCAAAAAAACGATCCGTGGTTTATGAAGCTGCAATTGGCGGATAAAAGACAAAACACGAAATCTGGAGATAAGGGGAGGAGACGCAGAGAGAGAAACATAATTAGAGAAATTTCAGATAGCGATGGCGAACACGTAGACGATTGCCAGCATTGTCTTCGCTTCCCATCGATACATGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAGAAAACGACAGAAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>CTAGATCTACCGAATCAAAGACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAAGAAAACGACAGAAAGAATTGATGGAATCACTCGTGGGAGCATGTCCTGTTTCTTCCTCTTTTTTTAACTTTGACTCGAAATTTTGAAACAAAATGAGAGAAGACTTTTGGAAAGGGAGGAGGAGTGTGTTGTTCCACACCGGTGTAAATGTCGTGTCTCATTCTCCCTAATCGTTCCTTTCAATCTGAACTTGAGACAATTCGGGAAGGGATCCAATGACACTGTCTTTGATTCGGTAGATCTAG</canonical_amplicon>
		<polymorphic_amplicon>AAGAAGAAAACGACAGAAAGAATTGATGGAATCACTCGTGGGAGCATGTCCTGTTTCTTCCTCTTTTTTTAACTTTGACTCGAAATTTTGAAACAAAATGAGAGAAGACTTKTGGAAAGGGAGGAGGAGTGTGTTGTTCCACACCGGTGTAAATGTCGTGTCTCATTCTCCCTAATCGTTCCTTTCAATCTGAACTTGAGACAATTCGGGAAGGGATCCAATGACACTGTCTTTGATTCGGTAGATCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22039</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>410531</contig_pos>
        <strand>+</strand>
        <context>AGGGAAATGT[A/C]GATTTTCGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTGAAAATTATAATTCCTAGTCCGGCAAGTTAGCCACGGAGGGAAATGT</left_flank>
        <right_flank>GATTTTCGAATTATGTGATTATATCCAAATCTCAAAGAGAATTTTCCGCA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCTTCTCGTGGAACCGAGATAAATTGAGTCCAAGTTGCTCTAGAAAATCCTAGGCCACCTCCTTCGCAAACCTCTCTAATTCCGCCGTCGCCATGCCTCGATTCGTAGCATTTATCACCAATAAATCCAACTTTTTTATTGTATCCAAAACTTCAAAATCGGCAGTCATCAGAATAACGATCGACGATTCGCCCAGACTTTTTGATTGATTAAAATGAAACGCGGAATAGACGAAAACATCGTATGGGGCTGAATTGAAAACTGCCTCATTTTCTAGGTCTGGAGAATCGATTCGTCTGAAAATTTTGGAAATTTTCGTAATTTTGATTATCACAGAAGAATCAATTTCGATTTTGTGATTTTCTCAAATTCTCACATTTTTATAATTGTTCTTTTTTCAACGCCTTCTGACCTAAAAACCTTGAATTTTATTTCGTGGCCTAATTTTTTGAAAATTATAATTCCTAGTCCGGCAAGTTAGCCACGGAGGGAAATGTAGATTTTCGAATTATGTGATTATATCCAAATCTCAAAGAGAATTTTCCGCATGTTTCAATTCGAGGCCTAGAAAACCTAAAATCAACATTTTTGCCCTAGTTTTCAAAAATTTATATTTTTAAGAAACCTATTTTTGAAGAAAGTTGAACCCATACTTTTGAATTTCCACTGAAACTTTCTGGAATTTTTTCCTAAACCGTAATGGCCTAGTTTTGTTTTCCTATGCCACAAAAACTCACACAAACTGCATAACGAGAGCAGCGACAAAAAACAAGAAGGAGAAGAAGAAAACGACAGAAAGAATTGATGGAATCACTCGTGGGAGCATGTCCTGTTTCTTCCTCTTTTTTTAACTTTGACTCGAAATTTTGAAACAAAATGAGAGAAGACTTTTGGAAAGGGAGGAGGAGTGTGTTGTTCCACACCGGTGTAAATGTCGTGTCTCATTCTCCCTAATCGTTCCTTTCAATCTGAACTTGAGACAATTCGGGAAGGGATCC</canonical>
            <polymorphic>TATCTTCTCGTGGAACCGAGATAAATTGAGTCCAAGTTGCTCTAGAAAATCCTAGGCCACCTCCTTCGCAAACCTCTCTAATTCCGCCGTCGCCATGCCTCGATTCGTAGCATTTATCACCAATAAATCCAACTTTTTTATTGTATCCAAAACTTCAAAATCGGCAGTCATCAGAATAACGATCGACGATTCGCCCAGACTTTTTGATTGATTAAAATGAAACGCGGAATAGACGAAAACATCGTATGGGGCTGAATTGAAAACTGCCTCATTTTCTAGGTCTGGAGAATCGATTCGTCTGAAAATTTTGGAAATTTTCGTAATTTTGATTATCACAGAAGAATCAATTTCGATTTTGTGATTTTCTCAAATTCTCACATTTTTATAATTGTTCTTTTTTCAACGCCTTCTGACCTAAAAACCTTGAATTTTATTTCGTGGCCTAATTTTTTGAAAATTATAATTCCTAGTCCGGCAAGTTAGCCACGGAGGGAAATGTMGATTTTCGAATTATGTGATTATATCCAAATCTCAAAGAGAATTTTCCGCATGTTTCAATTCGAGGCCTAGAAAACCTAAAATCAACATTTTTGCCCTAGTTTTCAAAAATTTATATTTTTAAGAAACCTATTTTTGAAGAAAGTTGAACCCATACTTTTGAATTTCCACTGAAACTTTCTGGAATTTTTTCCTAAACCGTAATGGCCTAGTTTTGTTTTCCTATGCCACAAAAACTCACACAAACTGCATAACGAGAGCAGCGACAAAAAACAAGAAGGAGAAGAAGAAAACGACAGAAAGAATTGATGGAATCACTCGTGGGAGCATGTCCTGTTTCTTCCTCTTTTTTTAACTTTGACTCGAAATTTTGAAACAAAATGAGAGAAGACTTTTGGAAAGGGAGGAGGAGTGTGTTGTTCCACACCGGTGTAAATGTCGTGTCTCATTCTCCCTAATCGTTCCTTTCAATCTGAACTTGAGACAATTCGGGAAGGGATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGACCTAAAAACCTTGAATTT</pcr_primer_p1>
		<pcr_primer_p2>AAAGTATGGGTTCAACTTTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTGACCTAAAAACCTTGAATTTTATTTCGTGGCCTAATTTTTTGAAAATTATAATTCCTAGTCCGGCAAGTTAGCCACGGAGGGAAATGTAGATTTTCGAATTATGTGATTATATCCAAATCTCAAAGAGAATTTTCCGCATGTTTCAATTCGAGGCCTAGAAAACCTAAAATCAACATTTTTGCCCTAGTTTTCAAAAATTTATATTTTTAAGAAACCTATTTTTGAAGAAAGTTGAACCCATACTTT</canonical_amplicon>
		<polymorphic_amplicon>TCTGACCTAAAAACCTTGAATTTTATTTCGTGGCCTAATTTTTTGAAAATTATAATTCCTAGTCCGGCAAGTTAGCCACGGAGGGAAATGTMGATTTTCGAATTATGTGATTATATCCAAATCTCAAAGAGAATTTTCCGCATGTTTCAATTCGAGGCCTAGAAAACCTAAAATCAACATTTTTGCCCTAGTTTTCAAAAATTTATATTTTTAAGAAACCTATTTTTGAAGAAAGTTGAACCCATACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22040</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>45826</contig_pos>
        <strand>+</strand>
        <context>CTAATGGAAC[C/T]TTGTAAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTTTGAGAGCAGCTCCTCGGACCTGAAAATATAAGGTGTCTAATGGAAC</left_flank>
        <right_flank>TTGTAAAAAATAAGCTCACTCTACATAAAGTAGCTACGATACGATCAGCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCCCAATCTGCAATCAACTCCCGAAACTTTCTCATTGCTCTCGCTTCTCTTTCGTAATCACACTCTTGCTTCAATTCTCTTCTAGCCACTGCAACGAATGCGTCCAAGAACATTCCTTTTGGAAAAATGCCTCCGACTGAAAGTACCGATACCAAATTGTCGATATCAGAGTCTATTCCCTCGGCCACACCGGGATACTGTACTTTCACTGCAACGATTCTCCCATCTTTCAGAGTTGCTTTATGCACTTGTCCAATAGAAGCACACGCGAATGGCTTATCATCAAACTGCTCAAATTTATCCCTCCAATCGTCTCCGAAAGCATCTCTCATTTGACGGTGAACTTGTTTGAGTGGCATGAAATCAGCCGATTGGCGAACTCTTTCAAAAATTTCAAGAAGAGCAGGTGGTACTGTAGATGAATCTTGAATTGAAAGCATTTGGCCTAGTTTGAGAGCAGCTCCTCGGACCTGAAAATATAAGGTGTCTAATGGAACCTTGTAAAAAATAAGCTCACTCTACATAAAGTAGCTACGATACGATCAGCATTGGCTTCAGATAGAAATGGATTCTTGGGAACTCCTTCTTCTTGTAACTTCTTTCCGATTCCAAAGGCTCTTCTTGTAACTTCAGCGGTTGCTCCACCCAGAAGACCAAAAGCCAACTGTCCAAACGTAGCTAATCTTCCGATTCTAGTAGCTGGAACGGAGCTTTCATTGCTTCGTGTTAACGTATGAACGTTTCCCATTTCTAGGTTCACTTCAAAATTTTTCGGTAATTCCGGACGATAAACTTCTGGTTTTGTTTTCTTGTCGCCGTAAATTGCTGTCTCGGCATTATCGTCTTGGACGGATTTTGCAGCTTTTATCAGAAAATCCGCCTCTTCCCTGGTCAAAGTTTTGTCCAAAGGTTGAGCATCTGGCAAGGCTGGAAAAATACTATGAATTCAAGAATGGAGTTTACTGAATTACCGGTTGCTTCAGTAAATCCACTACTCT</canonical>
            <polymorphic>CTTCCCAATCTGCAATCAACTCCCGAAACTTTCTCATTGCTCTCGCTTCTCTTTCGTAATCACACTCTTGCTTCAATTCTCTTCTAGCCACTGCAACGAATGCGTCCAAGAACATTCCTTTTGGAAAAATGCCTCCGACTGAAAGTACCGATACCAAATTGTCGATATCAGAGTCTATTCCCTCGGCCACACCGGGATACTGTACTTTCACTGCAACGATTCTCCCATCTTTCAGAGTTGCTTTATGCACTTGTCCAATAGAAGCACACGCGAATGGCTTATCATCAAACTGCTCAAATTTATCCCTCCAATCGTCTCCGAAAGCATCTCTCATTTGACGGTGAACTTGTTTGAGTGGCATGAAATCAGCCGATTGGCGAACTCTTTCAAAAATTTCAAGAAGAGCAGGTGGTACTGTAGATGAATCTTGAATTGAAAGCATTTGGCCTAGTTTGAGAGCAGCTCCTCGGACCTGAAAATATAAGGTGTCTAATGGAACYTTGTAAAAAATAAGCTCACTCTACATAAAGTAGCTACGATACGATCAGCATTGGCTTCAGATAGAAATGGATTCTTGGGAACTCCTTCTTCTTGTAACTTCTTTCCGATTCCAAAGGCTCTTCTTGTAACTTCAGCGGTTGCTCCACCCAGAAGACCAAAAGCCAACTGTCCAAACGTAGCTAATCTTCCGATTCTAGTAGCTGGAACGGAGCTTTCATTGCTTCGTGTTAACGTATGAACGTTTCCCATTTCTAGGTTCACTTCAAAATTTTTCGGTAATTCCGGACGATAAACTTCTGGTTTTGTTTTCTTGTCGCCGTAAATTGCTGTCTCGGCATTATCGTCTTGGACGGATTTTGCAGCTTTTATCAGAAAATCCGCCTCTTCCCTGGTCAAAGTTTTGTCCAAAGGTTGAGCATCTGGCAAGGCTGGAAAAATACTATGAATTCAAGAATGGAGTTTACTGAATTACCGGTTGCTTCAGTAAATCCACTACTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAAAATTTCAAGAAGAGC</pcr_primer_p1>
		<pcr_primer_p2>GAAGTTACAAGAAGAGCCTTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAAAATTTCAAGAAGAGCAGGTGGTACTGTAGATGAATCTTGAATTGAAAGCATTTGGCCTAGTTTGAGAGCAGCTCCTCGGACCTGAAAATATAAGGTGTCTAATGGAACCTTGTAAAAAATAAGCTCACTCTACATAAAGTAGCTACGATACGATCAGCATTGGCTTCAGATAGAAATGGATTCTTGGGAACTCCTTCTTCTTGTAACTTCTTTCCGATTCCAAAGGCTCTTCTTGTAACTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAAAATTTCAAGAAGAGCAGGTGGTACTGTAGATGAATCTTGAATTGAAAGCATTTGGCCTAGTTTGAGAGCAGCTCCTCGGACCTGAAAATATAAGGTGTCTAATGGAACYTTGTAAAAAATAAGCTCACTCTACATAAAGTAGCTACGATACGATCAGCATTGGCTTCAGATAGAAATGGATTCTTGGGAACTCCTTCTTCTTGTAACTTCTTTCCGATTCCAAAGGCTCTTCTTGTAACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22041</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>70092</contig_pos>
        <strand></strand>
        <context>AAACTTTACT[G/A]CCACCTGTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCTTCCTTCGGCTTGGGGGTGGAGCATTTGTGGTTAAAAAAAACTTTACT</left_flank>
        <right_flank>CCACCTGTTGCAGGAATGATTGTGAGGGGAAAGATCATGGTTTTCGTTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGCTCCTTGATTCCTGAAATCTCTGTTTAAAGCACCAGGAGCATCGGTTTTTGATTGTGAAGAATATTCTTGTAAAAGGAGAGTAGCGTGTGAAAATATTCGAAGGGTAGACAATTTTGTGTATTAAGAGTCCTAATGCGGTCACCAACCAAGCCTCAGATTCCAACTTCTGTAGAGATACTTTCTCTAGAATATGAAATTTATACTGTGATAAAAAGTAATTTTTTACCAAATGTCTCATTCTGCGAAAATTCGGTCCGCCAAACAGAGCGCCCTTCGCCTGTCATCAAGCAGGCGTTCAACAACCTATTTTTGAGATTCAATCATCATTCTATGATCTAGTGGGTGTGTCAAATTTTGTTTTCTGGCTATCGTTCAACCCAAATTTTCAAGTCGGTTTTCCGAGTGATTCCGATTGTCCGTCAACGGTCGTAGACGGCCCGTCGGTCTTCCTTCGGCTTGGGGGTGGAGCATTTGTGGTTAAAAAAAACTTTACTGCCACCTGTTGCAGGAATGATTGTGAGGGGAAAGATCATGGTTTTCGTTTCCGGATGTAAAACGTTTCCGCGAAGTTATAGTCCATATAAAACTTTTCTCCAGTTTCCGATTCTACACTTCTCTCGATGAGGCTGTTTATTTTAGTTTGGATTTGTGTTGTTTCTGGTATCATTTCATTCACTTTTTTCAAATGACTCATTAATTTGTTCAGTGACGAGCATTGTCTTCGATGATGACACACATTCAAGCTCTAGCTCTGATGAGTCTTCATATTCATCTGGGCATCATGGGGGTCATGGAAGTCATGGGCATCATGGAAATCATGGAAATCATGGAAATCATGGAAATCATGGAAATCATGGAGGAAGACCTCCAAGACCTCCTCCAAGGCCAACGTCGAAATGCGAAGACGGATGGACAAGAGTCAAAAGACAAGGTGGTGGATGGTGTGTGAAGATTTTCGAAGGTCAGACCAATCAACCACAATCAGAAGCAATTTG</canonical>
            <polymorphic>GGTGCTCCTTGATTCCTGAAATCTCTGTTTAAAGCACCAGGAGCATCGGTTTTTGATTGTGAAGAATATTCTTGTAAAAGGAGAGTAGCGTGTGAAAATATTCGAAGGGTAGACAATTTTGTGTATTAAGAGTCCTAATGCGGTCACCAACCAAGCCTCAGATTCCAACTTCTGTAGAGATACTTTCTCTAGAATATGAAATTTATACTGTGATAAAAAGTAATTTTTTACCAAATGTCTCATTCTGCGAAAATTCGGTCCGCCAAACAGAGCGCCCTTCGCCTGTCATCAAGCAGGCGTTCAACAACCTATTTTTGAGATTCAATCATCATTCTATGATCTAGTGGGTGTGTCAAATTTTGTTTTCTGGCTATCGTTCAACCCAAATTTTCAAGTCGGTTTTCCGAGTGATTCCGATTGTCCGTCAACGGTCGTAGACGGCCCGTCGGTCTTCCTTCGGCTTGGGGGTGGAGCATTTGTGGTTAAAAAAAACTTTACTRCCACCTGTTGCAGGAATGATTGTGAGGGGAAAGATCATGGTTTTCGTTTCCGGATGTAAAACGTTTCCGCGAAGTTATAGTCCATATAAAACTTTTCTCCAGTTTCCGATTCTACACTTCTCTCGATGAGGCTGTTTATTTTAGTTTGGATTTGTGTTGTTTCTGGTATCATTTCATTCACTTTTTTCAAATGACTCATTAATTTGTTCAGTGACGAGCATTGTCTTCGATGATGACACACATTCAAGCTCTAGCTCTGATGAGTCTTCATATTCATCTGGGCATCATGGGGGTCATGGAAGTCATGGGCATCATGGAAATCATGGAAATCATGGAAATCATGGAAATCATGGAAATCATGGAGGAAGACCTCCAAGACCTCCTCCAAGGCCAACGTCGAAATGCGAAGACGGATGGACAAGAGTCAAAAGACAAGGTGGTGGATGGTGTGTGAAGATTTTCGAAGGTCAGACCAATCAACCACAATCAGAAGCAATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAATTTTGTTTTCTGGCTAT</pcr_primer_p1>
		<pcr_primer_p2>CTGGAGAAAAGTTTTATATGGACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAAATTTTGTTTTCTGGCTATCGTTCAACCCAAATTTTCAAGTCGGTTTTCCGAGTGATTCCGATTGTCCGTCAACGGTCGTAGACGGCCCGTCGGTCTTCCTTCGGCTTGGGGGTGGAGCATTTGTGGTTAAAAAAAACTTTACTGCCACCTGTTGCAGGAATGATTGTGAGGGGAAAGATCATGGTTTTCGTTTCCGGATGTAAAACGTTTCCGCGAAGTTATAGTCCATATAAAACTTTTCTCCAG</canonical_amplicon>
		<polymorphic_amplicon>TCAAATTTTGTTTTCTGGCTATCGTTCAACCCAAATTTTCAAGTCGGTTTTCCGAGTGATTCCGATTGTCCGTCAACGGTCGTAGACGGCCCGTCGGTCTTCCTTCGGCTTGGGGGTGGAGCATTTGTGGTTAAAAAAAACTTTACTRCCACCTGTTGCAGGAATGATTGTGAGGGGAAAGATCATGGTTTTCGTTTCCGGATGTAAAACGTTTCCGCGAAGTTATAGTCCATATAAAACTTTTCTCCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22098</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>73113</contig_pos>
        <strand>+</strand>
        <context>CCTCACCTGC[G/T]TTTCTTGTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGAGCTTCCGCAAAATTCTAGGCACTATAAAACCTTGCAACCTCACCTGC</left_flank>
        <right_flank>TTTCTTGTTCCGCAATGAGGTTTCTTGTGATTTTTGGTGTTCTTTTTGTC</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACGGTATTCATGGTGTAGATCACAGACAGTTTTGTGATACTTATTGGTAGATTCGAAACATTCTCATAAAAACAGATACATACATACAATACCGTAAAACCTGGATTTAAAGGATCTCTGTCATGGAAGGGCAGTCTAAGAATCGGACCATTTGAAATTTAAACGTTTATATGTTCTGAACAAAAATAAACCAAAATTTTCGGCGATGCTTCTCAGAAAAAAGTCCCGGAAAAATAGAAGGACCCTTGTAACATCATTCCGGAGGTACCTCGAGATCAAAACATTACAAGTGTAAACCATTCATGTTTCACGTTACTAGGATTACCGAGAAGATTGCAAAAGATTTCTATGTCTTTTCAACTGAAAGCGCATTGAGATCGAAACTATAAAAATACGTTTTTGACACTTCGAAAATGTTCGTAGTTTGATTTTGAAAGATCACTTTTGAAGAGCTTCCGCAAAATTCTAGGCACTATAAAACCTTGCAACCTCACCTGCTTTTCTTGTTCCGCAATGAGGTTTCTTGTGATTTTTGGTGTTCTTTTTGTCACTGGTAAGAATGTCTTGATATTCCAAAAACAAAGAGCAATTTTTTTCAGTTAGTTCCATTGTCTTCGATGATGATTCAAGCTCTGGATCGCACGAATCTTCATATTCTGGGGGTCGTGGAGGAAATCATGGTCATAATGGAAATCATGGAAACCACGGAGGAAGACCTCCAAGACCAAATAGGCCACCAGTAACCCGGAGACCAACAAGATGCGAAGCCGGATGGACAAGAGTAAATAGGCAAAGTGGTGGATGGTGCGTAAAAGTATTCGCTGGTATGACGAATCAACCACAAGCAGAATCATTATGTGCTCAACATGGAGCCCGATTGTCAGCTGTGGAGAGTCATGAGGAAAGGGAAACTATTGCTGAATTGGGAAGAGTTGTGATGACGACTACTTCTGCGTGGAAGTTTGGAACTCTGAGAACTGGAGTCGTGCGAGATTCAAA</canonical>
            <polymorphic>CACGGTATTCATGGTGTAGATCACAGACAGTTTTGTGATACTTATTGGTAGATTCGAAACATTCTCATAAAAACAGATACATACATACAATACCGTAAAACCTGGATTTAAAGGATCTCTGTCATGGAAGGGCAGTCTAAGAATCGGACCATTTGAAATTTAAACGTTTATATGTTCTGAACAAAAATAAACCAAAATTTTCGGCGATGCTTCTCAGAAAAAAGTCCCGGAAAAATAGAAGGACCCTTGTAACATCATTCCGGAGGTACCTCGAGATCAAAACATTACAAGTGTAAACCATTCATGTTTCACGTTACTAGGATTACCGAGAAGATTGCAAAAGATTTCTATGTCTTTTCAACTGAAAGCGCATTGAGATCGAAACTATAAAAATACGTTTTTGACACTTCGAAAATGTTCGTAGTTTGATTTTGAAAGATCACTTTTGAAGAGCTTCCGCAAAATTCTAGGCACTATAAAACCTTGCAACCTCACCTGCKTTTCTTGTTCCGCAATGAGGTTTCTTGTGATTTTTGGTGTTCTTTTTGTCACTGGTAAGAATGTCTTGATATTCCAAAAACAAAGAGCAATTTTTTTCAGTTAGTTCCATTGTCTTCGATGATGATTCAAGCTCTGGATCGCACGAATCTTCATATTCTGGGGGTCGTGGAGGAAATCATGGTCATAATGGAAATCATGGAAACCACGGAGGAAGACCTCCAAGACCAAATAGGCCACCAGTAACCCGGAGACCAACAAGATGCGAAGCCGGATGGACAAGAGTAAATAGGCAAAGTGGTGGATGGTGCGTAAAAGTATTCGCTGGTATGACGAATCAACCACAAGCAGAATCATTATGTGCTCAACATGGAGCCCGATTGTCAGCTGTGGAGAGTCATGAGGAAAGGGAAACTATTGCTGAATTGGGAAGAGTTGTGATGACGACTACTTCTGCGTGGAAGTTTGGAACTCTGAGAACTGGAGTCGTGCGAGATTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCATTGAGATCGAAACTATAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAGACAATGGAACTAACTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCATTGAGATCGAAACTATAAAAATACGTTTTTGACACTTCGAAAATGTTCGTAGTTTGATTTTGAAAGATCACTTTTGAAGAGCTTCCGCAAAATTCTAGGCACTATAAAACCTTGCAACCTCACCTGCTTTTCTTGTTCCGCAATGAGGTTTCTTGTGATTTTTGGTGTTCTTTTTGTCACTGGTAAGAATGTCTTGATATTCCAAAAACAAAGAGCAATTTTTTTCAGTTAGTTCCATTGTCTTC</canonical_amplicon>
		<polymorphic_amplicon>GCATTGAGATCGAAACTATAAAAATACGTTTTTGACACTTCGAAAATGTTCGTAGTTTGATTTTGAAAGATCACTTTTGAAGAGCTTCCGCAAAATTCTAGGCACTATAAAACCTTGCAACCTCACCTGCKTTTCTTGTTCCGCAATGAGGTTTCTTGTGATTTTTGGTGTTCTTTTTGTCACTGGTAAGAATGTCTTGATATTCCAAAAACAAAGAGCAATTTTTTTCAGTTAGTTCCATTGTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22099</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>74081</contig_pos>
        <strand>+</strand>
        <context>CCTCATAGGA[A/C]ATTAACTGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAGAGCTGAGAATCCAGTGATTTTATTAGTTACAGTTGTCCTCATAGGA</left_flank>
        <right_flank>ATTAACTGAAGAACATGGATTTGGATCACTTACAGTTTTCTGGTAACTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCTGAGAACTGGAGTCGTGCGAGATTCAAATAATAGTGTGAGTTATGAACATCTGATTTGTAAATTTCAAAATCTAAATTAAGAATTTATAGAAAATTTCCTGAAATTACAGCCATTCCACTCAACAGATGGAAATGCAAAAGACTTGAATGCTGTCAGATGGAGTGGAGGAGAACCGATTAACGGTCTCAACCGGAACAATAATTGTGGAATGATGTGGATTTGGGTCCCAGGAGGCAGACGAGTAGATCAACGTCAACATGGTCTATTCTTCTCAATGGTCTGCCATATTTCATGGAACGATAGATTCAGGGGATATGTTTGTGGAAAAAAGGCCCAATAATTATTTCTTTTTCTGTTGAATAAAACTTTTAATTTTGAATGTTGAGTATCCTGTGAATCTGACGTGTAGTCTTGAAGAGACGACAATCTTGGAAGTAAAACAAAAAAGAGCTGAGAATCCAGTGATTTTATTAGTTACAGTTGTCCTCATAGGACATTAACTGAAGAACATGGATTTGGATCACTTACAGTTTTCTGGTAACTATTGATAGATCAGAATTCTGATAGTACTCAGAAAATAACAAAAATACCGTATAACCTGCATGAGCATTATGCCTGTGATAGGCACTCGAAGAAACGGGTCGTTTGAAATTAAGATTTTTGGTATCAAATTTTTTGGTGATTTCCAGCTGAAAACTCATAAAGATCAAAACTGTGACTATAGATTTTTGAAACTTACTATTAGAAAATCTTCGTAGTTTGATTATGTAAGATCACTTTCAAAAAGTTTCTGCAAGGCTATGGGCATGGTGAAGCAGGGCTGAGCGAAAAACGACATCCGAAAAAAAAATAAAAAGCTGATATTTGGGTTGAAATGAAAATTACCTCCAATTAAAAACGTATTTTCGAAATATCATAATTTTTTGAGATTTTCCGGAAGGTTCTCGAAACATTTTGAAAATCTCAAGTTAATCCAAGTCAATTTTTTTTGCCAA</canonical>
            <polymorphic>ACTCTGAGAACTGGAGTCGTGCGAGATTCAAATAATAGTGTGAGTTATGAACATCTGATTTGTAAATTTCAAAATCTAAATTAAGAATTTATAGAAAATTTCCTGAAATTACAGCCATTCCACTCAACAGATGGAAATGCAAAAGACTTGAATGCTGTCAGATGGAGTGGAGGAGAACCGATTAACGGTCTCAACCGGAACAATAATTGTGGAATGATGTGGATTTGGGTCCCAGGAGGCAGACGAGTAGATCAACGTCAACATGGTCTATTCTTCTCAATGGTCTGCCATATTTCATGGAACGATAGATTCAGGGGATATGTTTGTGGAAAAAAGGCCCAATAATTATTTCTTTTTCTGTTGAATAAAACTTTTAATTTTGAATGTTGAGTATCCTGTGAATCTGACGTGTAGTCTTGAAGAGACGACAATCTTGGAAGTAAAACAAAAAAGAGCTGAGAATCCAGTGATTTTATTAGTTACAGTTGTCCTCATAGGAMATTAACTGAAGAACATGGATTTGGATCACTTACAGTTTTCTGGTAACTATTGATAGATCAGAATTCTGATAGTACTCAGAAAATAACAAAAATACCGTATAACCTGCATGAGCATTATGCCTGTGATAGGCACTCGAAGAAACGGGTCGTTTGAAATTAAGATTTTTGGTATCAAATTTTTTGGTGATTTCCAGCTGAAAACTCATAAAGATCAAAACTGTGACTATAGATTTTTGAAACTTACTATTAGAAAATCTTCGTAGTTTGATTATGTAAGATCACTTTCAAAAAGTTTCTGCAAGGCTATGGGCATGGTGAAGCAGGGCTGAGCGAAAAACGACATCCGAAAAAAAAATAAAAAGCTGATATTTGGGTTGAAATGAAAATTACCTCCAATTAAAAACGTATTTTCGAAATATCATAATTTTTTGAGATTTTCCGGAAGGTTCTCGAAACATTTTGAAAATCTCAAGTTAATCCAAGTCAATTTTTTTTGCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAATCTTGGAAGTAAAACAAA</pcr_primer_p1>
		<pcr_primer_p2>TGATACCAAAAATCTTAATTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GACAATCTTGGAAGTAAAACAAAAAAGAGCTGAGAATCCAGTGATTTTATTAGTTACAGTTGTCCTCATAGGACATTAACTGAAGAACATGGATTTGGATCACTTACAGTTTTCTGGTAACTATTGATAGATCAGAATTCTGATAGTACTCAGAAAATAACAAAAATACCGTATAACCTGCATGAGCATTATGCCTGTGATAGGCACTCGAAGAAACGGGTCGTTTGAAATTAAGATTTTTGGTATCA</canonical_amplicon>
		<polymorphic_amplicon>GACAATCTTGGAAGTAAAACAAAAAAGAGCTGAGAATCCAGTGATTTTATTAGTTACAGTTGTCCTCATAGGAMATTAACTGAAGAACATGGATTTGGATCACTTACAGTTTTCTGGTAACTATTGATAGATCAGAATTCTGATAGTACTCAGAAAATAACAAAAATACCGTATAACCTGCATGAGCATTATGCCTGTGATAGGCACTCGAAGAAACGGGTCGTTTGAAATTAAGATTTTTGGTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22100</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>73896</contig_pos>
        <strand>+</strand>
        <context>ATAGATTCAG[A/G]GGATATGTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTCTATTCTTCTCAATGGTCTGCCATATTTCATGGAACGATAGATTCAG</left_flank>
        <right_flank>GGATATGTTTGTGGAAAAAAGGCCCAATAATTATTTCTTTTTCTGTTGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATAGGCAAAGTGGTGGATGGTGCGTAAAAGTATTCGCTGGTATGACGAATCAACCACAAGCAGAATCATTATGTGCTCAACATGGAGCCCGATTGTCAGCTGTGGAGAGTCATGAGGAAAGGGAAACTATTGCTGAATTGGGAAGAGTTGTGATGACGACTACTTCTGCGTGGAAGTTTGGAACTCTGAGAACTGGAGTCGTGCGAGATTCAAATAATAGTGTGAGTTATGAACATCTGATTTGTAAATTTCAAAATCTAAATTAAGAATTTATAGAAAATTTCCTGAAATTACAGCCATTCCACTCAACAGATGGAAATGCAAAAGACTTGAATGCTGTCAGATGGAGTGGAGGAGAACCGATTAACGGTCTCAACCGGAACAATAATTGTGGAATGATGTGGATTTGGGTCCCAGGAGGCAGACGAGTAGATCAACGTCAACATGGTCTATTCTTCTCAATGGTCTGCCATATTTCATGGAACGATAGATTCAGGGGATATGTTTGTGGAAAAAAGGCCCAATAATTATTTCTTTTTCTGTTGAATAAAACTTTTAATTTTGAATGTTGAGTATCCTGTGAATCTGACGTGTAGTCTTGAAGAGACGACAATCTTGGAAGTAAAACAAAAAAGAGCTGAGAATCCAGTGATTTTATTAGTTACAGTTGTCCTCATAGGACATTAACTGAAGAACATGGATTTGGATCACTTACAGTTTTCTGGTAACTATTGATAGATCAGAATTCTGATAGTACTCAGAAAATAACAAAAATACCGTATAACCTGCATGAGCATTATGCCTGTGATAGGCACTCGAAGAAACGGGTCGTTTGAAATTAAGATTTTTGGTATCAAATTTTTTGGTGATTTCCAGCTGAAAACTCATAAAGATCAAAACTGTGACTATAGATTTTTGAAACTTACTATTAGAAAATCTTCGTAGTTTGATTATGTAAGATCACTTTCAAAAAGTTTCTGCAAGGCTATGGGCATGG</canonical>
            <polymorphic>TAAATAGGCAAAGTGGTGGATGGTGCGTAAAAGTATTCGCTGGTATGACGAATCAACCACAAGCAGAATCATTATGTGCTCAACATGGAGCCCGATTGTCAGCTGTGGAGAGTCATGAGGAAAGGGAAACTATTGCTGAATTGGGAAGAGTTGTGATGACGACTACTTCTGCGTGGAAGTTTGGAACTCTGAGAACTGGAGTCGTGCGAGATTCAAATAATAGTGTGAGTTATGAACATCTGATTTGTAAATTTCAAAATCTAAATTAAGAATTTATAGAAAATTTCCTGAAATTACAGCCATTCCACTCAACAGATGGAAATGCAAAAGACTTGAATGCTGTCAGATGGAGTGGAGGAGAACCGATTAACGGTCTCAACCGGAACAATAATTGTGGAATGATGTGGATTTGGGTCCCAGGAGGCAGACGAGTAGATCAACGTCAACATGGTCTATTCTTCTCAATGGTCTGCCATATTTCATGGAACGATAGATTCAGRGGATATGTTTGTGGAAAAAAGGCCCAATAATTATTTCTTTTTCTGTTGAATAAAACTTTTAATTTTGAATGTTGAGTATCCTGTGAATCTGACGTGTAGTCTTGAAGAGACGACAATCTTGGAAGTAAAACAAAAAAGAGCTGAGAATCCAGTGATTTTATTAGTTACAGTTGTCCTCATAGGACATTAACTGAAGAACATGGATTTGGATCACTTACAGTTTTCTGGTAACTATTGATAGATCAGAATTCTGATAGTACTCAGAAAATAACAAAAATACCGTATAACCTGCATGAGCATTATGCCTGTGATAGGCACTCGAAGAAACGGGTCGTTTGAAATTAAGATTTTTGGTATCAAATTTTTTGGTGATTTCCAGCTGAAAACTCATAAAGATCAAAACTGTGACTATAGATTTTTGAAACTTACTATTAGAAAATCTTCGTAGTTTGATTATGTAAGATCACTTTCAAAAAGTTTCTGCAAGGCTATGGGCATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAATTGTGGAATGATGTGGA</pcr_primer_p1>
		<pcr_primer_p2>TTTGTTTTACTTCCAAGATTGTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATAATTGTGGAATGATGTGGATTTGGGTCCCAGGAGGCAGACGAGTAGATCAACGTCAACATGGTCTATTCTTCTCAATGGTCTGCCATATTTCATGGAACGATAGATTCAGGGGATATGTTTGTGGAAAAAAGGCCCAATAATTATTTCTTTTTCTGTTGAATAAAACTTTTAATTTTGAATGTTGAGTATCCTGTGAATCTGACGTGTAGTCTTGAAGAGACGACAATCTTGGAAGTAAAACAAA</canonical_amplicon>
		<polymorphic_amplicon>ATAATTGTGGAATGATGTGGATTTGGGTCCCAGGAGGCAGACGAGTAGATCAACGTCAACATGGTCTATTCTTCTCAATGGTCTGCCATATTTCATGGAACGATAGATTCAGRGGATATGTTTGTGGAAAAAAGGCCCAATAATTATTTCTTTTTCTGTTGAATAAAACTTTTAATTTTGAATGTTGAGTATCCTGTGAATCTGACGTGTAGTCTTGAAGAGACGACAATCTTGGAAGTAAAACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22101</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>143785</contig_pos>
        <strand></strand>
        <context>ACTACAACTA[C/T]GGTATTGGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGTGCTCGTGGATTAGTATCTTGTGCTGGAAGTGAACCTACTACAACTA</left_flank>
        <right_flank>GGTATTGGAACCTGTGACTTCCACAGAAAAACCAAAAGAAAAGAAAAAGA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTGCAGTAGATGATATTGAAAAGTGGTCAACTGACAAAATGTTTATTATAACCTCAAAAATATTTTGTCAGTTGATCACTTTTCGATATATTTTCCAGGAAATGAGATATATATGCTCAAAGTTGACGGTTTGGGGCCATTCTATTAGAGTATTAGAAAAAAAAACCTCACAAATCTTGTCAGGGTGTGGCCAAGGAACAATTCTCTGTGATGCTGGTGTTGGTCAACATCGGTGCGGAAAGTGTGTAAGACCTCAGGATATGGTAAATTTATGTTTGGATAGAAAATGTGAGTTTTGAAAACTTTAGATGGAAATTTAATTATTTTAGGGCAACATTTATGTGCCTATCAAGGTACCTATAAATGTGCGAAAACGATGAATTGTGTATTTGCAAAATGGTTGATGGATGGAAAAGACGATTGTGGTGATAGCAGTGATGAAGATGTTTGTGCTCGTGGATTAGTATCTTGTGCTGGAAGTGAACCTACTACAACTACGGTATTGGAACCTGTGACTTCCACAGAAAAACCAAAAGAAAAGAAAAAGAAAATAATACTCAAAGGTGAATAATGATAATTATATTTTCCCGAATCCGGAAATTCAGATCGCTGCGAGCTAGGCGAGTTCAGATGTCTAGACGGGGAGTGTCTTGATGTGTCACGAGTATTGGATGGACACGAAGACTGTTCAGATGCAAGCGATGAAAGTTAGTTTTGAATTTGATTCTTTACGAATCTTTTACTTCTTGAGACTACTGTGAAATGCACGACGGAGTGTGCAACACAGCCGCTCGATGCTCATTCCAACGGGATGTCGGTGCTTTTGGATGCGGATGCCCGAAAGGATTCGTTCGTAATCCGACTGGAATATGTGAAATTGAAGAAAATCGAATGAAAATTTGAAATTAATATTTCATTATTAAATTGTACATCAATTAATTAACAACATCGTTATGAGCAAATGGTTTAATGAGTGATGTAAAAATGAAGTTTTTAAT</canonical>
            <polymorphic>ATTTGCAGTAGATGATATTGAAAAGTGGTCAACTGACAAAATGTTTATTATAACCTCAAAAATATTTTGTCAGTTGATCACTTTTCGATATATTTTCCAGGAAATGAGATATATATGCTCAAAGTTGACGGTTTGGGGCCATTCTATTAGAGTATTAGAAAAAAAAACCTCACAAATCTTGTCAGGGTGTGGCCAAGGAACAATTCTCTGTGATGCTGGTGTTGGTCAACATCGGTGCGGAAAGTGTGTAAGACCTCAGGATATGGTAAATTTATGTTTGGATAGAAAATGTGAGTTTTGAAAACTTTAGATGGAAATTTAATTATTTTAGGGCAACATTTATGTGCCTATCAAGGTACCTATAAATGTGCGAAAACGATGAATTGTGTATTTGCAAAATGGTTGATGGATGGAAAAGACGATTGTGGTGATAGCAGTGATGAAGATGTTTGTGCTCGTGGATTAGTATCTTGTGCTGGAAGTGAACCTACTACAACTAYGGTATTGGAACCTGTGACTTCCACAGAAAAACCAAAAGAAAAGAAAAAGAAAATAATACTCAAAGGTGAATAATGATAATTATATTTTCCCGAATCCGGAAATTCAGATCGCTGCGAGCTAGGCGAGTTCAGATGTCTAGACGGGGAGTGTCTTGATGTGTCACGAGTATTGGATGGACACGAAGACTGTTCAGATGCAAGCGATGAAAGTTAGTTTTGAATTTGATTCTTTACGAATCTTTTACTTCTTGAGACTACTGTGAAATGCACGACGGAGTGTGCAACACAGCCGCTCGATGCTCATTCCAACGGGATGTCGGTGCTTTTGGATGCGGATGCCCGAAAGGATTCGTTCGTAATCCGACTGGAATATGTGAAATTGAAGAAAATCGAATGAAAATTTGAAATTAATATTTCATTATTAAATTGTACATCAATTAATTAACAACATCGTTATGAGCAAATGGTTTAATGAGTGATGTAAAAATGAAGTTTTTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>371 241 187 130 71</canonical_bands>
                <polymorphic_bands>558 241 130 71</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAGCAGTGATGAAGATGTTTGT</pcr_primer_p1>
		<pcr_primer_p2>GTCCATCCAATACTCGTGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATAGCAGTGATGAAGATGTTTGTGCTCGTGGATTAGTATCTTGTGCTGGAAGTGAACCTACTACAACTACGGTATTGGAACCTGTGACTTCCACAGAAAAACCAAAAGAAAAGAAAAAGAAAATAATACTCAAAGGTGAATAATGATAATTATATTTTCCCGAATCCGGAAATTCAGATCGCTGCGAGCTAGGCGAGTTCAGATGTCTAGACGGGGAGTGTCTTGATGTGTCACGAGTATTGGATGGAC</canonical_amplicon>
		<polymorphic_amplicon>ATAGCAGTGATGAAGATGTTTGTGCTCGTGGATTAGTATCTTGTGCTGGAAGTGAACCTACTACAACTAYGGTATTGGAACCTGTGACTTCCACAGAAAAACCAAAAGAAAAGAAAAAGAAAATAATACTCAAAGGTGAATAATGATAATTATATTTTCCCGAATCCGGAAATTCAGATCGCTGCGAGCTAGGCGAGTTCAGATGTCTAGACGGGGAGTGTCTTGATGTGTCACGAGTATTGGATGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22102</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>144020</contig_pos>
        <strand></strand>
        <context>GATTCTTTAC[G/A]AATCTTTTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GACTGTTCAGATGCAAGCGATGAAAGTTAGTTTTGAATTTGATTCTTTAC</left_flank>
        <right_flank>AATCTTTTACTTCTTGAGACTACTGTGAAATGCACGACGGAGTGTGCAAC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCGGAAAGTGTGTAAGACCTCAGGATATGGTAAATTTATGTTTGGATAGAAAATGTGAGTTTTGAAAACTTTAGATGGAAATTTAATTATTTTAGGGCAACATTTATGTGCCTATCAAGGTACCTATAAATGTGCGAAAACGATGAATTGTGTATTTGCAAAATGGTTGATGGATGGAAAAGACGATTGTGGTGATAGCAGTGATGAAGATGTTTGTGCTCGTGGATTAGTATCTTGTGCTGGAAGTGAACCTACTACAACTACGGTATTGGAACCTGTGACTTCCACAGAAAAACCAAAAGAAAAGAAAAAGAAAATAATACTCAAAGGTGAATAATGATAATTATATTTTCCCGAATCCGGAAATTCAGATCGCTGCGAGCTAGGCGAGTTCAGATGTCTAGACGGGGAGTGTCTTGATGTGTCACGAGTATTGGATGGACACGAAGACTGTTCAGATGCAAGCGATGAAAGTTAGTTTTGAATTTGATTCTTTACGAATCTTTTACTTCTTGAGACTACTGTGAAATGCACGACGGAGTGTGCAACACAGCCGCTCGATGCTCATTCCAACGGGATGTCGGTGCTTTTGGATGCGGATGCCCGAAAGGATTCGTTCGTAATCCGACTGGAATATGTGAAATTGAAGAAAATCGAATGAAAATTTGAAATTAATATTTCATTATTAAATTGTACATCAATTAATTAACAACATCGTTATGAGCAAATGGTTTAATGAGTGATGTAAAAATGAAGTTTTTAATTGAAAAACTGAATAGTTTTCGTATTCTCTGCACATTTAGACCCGTGATGAATGGAAATTTGGAAGAAAGGGGGAAGATTTTAATAACTTTCGTAAGGTGTTATCCTTGGAGTTTGTCCATAGATGACATTTGGATTCGAAGTTGTTATCATTCTCGACGATCTTGAATGAAATTGGCCTCCTTTCCAGCCTCTCATAGCTGCATATTGTTGTCGTTCCACATTTCGACGCCTTCT</canonical>
            <polymorphic>TGCGGAAAGTGTGTAAGACCTCAGGATATGGTAAATTTATGTTTGGATAGAAAATGTGAGTTTTGAAAACTTTAGATGGAAATTTAATTATTTTAGGGCAACATTTATGTGCCTATCAAGGTACCTATAAATGTGCGAAAACGATGAATTGTGTATTTGCAAAATGGTTGATGGATGGAAAAGACGATTGTGGTGATAGCAGTGATGAAGATGTTTGTGCTCGTGGATTAGTATCTTGTGCTGGAAGTGAACCTACTACAACTACGGTATTGGAACCTGTGACTTCCACAGAAAAACCAAAAGAAAAGAAAAAGAAAATAATACTCAAAGGTGAATAATGATAATTATATTTTCCCGAATCCGGAAATTCAGATCGCTGCGAGCTAGGCGAGTTCAGATGTCTAGACGGGGAGTGTCTTGATGTGTCACGAGTATTGGATGGACACGAAGACTGTTCAGATGCAAGCGATGAAAGTTAGTTTTGAATTTGATTCTTTACRAATCTTTTACTTCTTGAGACTACTGTGAAATGCACGACGGAGTGTGCAACACAGCCGCTCGATGCTCATTCCAACGGGATGTCGGTGCTTTTGGATGCGGATGCCCGAAAGGATTCGTTCGTAATCCGACTGGAATATGTGAAATTGAAGAAAATCGAATGAAAATTTGAAATTAATATTTCATTATTAAATTGTACATCAATTAATTAACAACATCGTTATGAGCAAATGGTTTAATGAGTGATGTAAAAATGAAGTTTTTAATTGAAAAACTGAATAGTTTTCGTATTCTCTGCACATTTAGACCCGTGATGAATGGAAATTTGGAAGAAAGGGGGAAGATTTTAATAACTTTCGTAAGGTGTTATCCTTGGAGTTTGTCCATAGATGACATTTGGATTCGAAGTTGTTATCATTCTCGACGATCTTGAATGAAATTGGCCTCCTTTCCAGCCTCTCATAGCTGCATATTGTTGTCGTTCCACATTTCGACGCCTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>357 286 133 112 102 10</canonical_bands>
                <polymorphic_bands>357 286 133 122 102</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>357 286 133 112 102 10</canonical_bands>
                <polymorphic_bands>357 286 133 122 102</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTCTTGATGTGTCACGAGTAT</pcr_primer_p1>
		<pcr_primer_p2>TTCATTCGATTTTCTTCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTCTTGATGTGTCACGAGTATTGGATGGACACGAAGACTGTTCAGATGCAAGCGATGAAAGTTAGTTTTGAATTTGATTCTTTACGAATCTTTTACTTCTTGAGACTACTGTGAAATGCACGACGGAGTGTGCAACACAGCCGCTCGATGCTCATTCCAACGGGATGTCGGTGCTTTTGGATGCGGATGCCCGAAAGGATTCGTTCGTAATCCGACTGGAATATGTGAAATTGAAGAAAATCGAATGAA</canonical_amplicon>
		<polymorphic_amplicon>TGTCTTGATGTGTCACGAGTATTGGATGGACACGAAGACTGTTCAGATGCAAGCGATGAAAGTTAGTTTTGAATTTGATTCTTTACRAATCTTTTACTTCTTGAGACTACTGTGAAATGCACGACGGAGTGTGCAACACAGCCGCTCGATGCTCATTCCAACGGGATGTCGGTGCTTTTGGATGCGGATGCCCGAAAGGATTCGTTCGTAATCCGACTGGAATATGTGAAATTGAAGAAAATCGAATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22103</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>144147</contig_pos>
        <strand></strand>
        <context>GTTCGTAATC[C/T]GACTGGAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGATGTCGGTGCTTTTGGATGCGGATGCCCGAAAGGATTCGTTCGTAATC</left_flank>
        <right_flank>GACTGGAATATGTGAAATTGAAGAAAATCGAATGAAAATTTGAAATTAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATGTGCGAAAACGATGAATTGTGTATTTGCAAAATGGTTGATGGATGGAAAAGACGATTGTGGTGATAGCAGTGATGAAGATGTTTGTGCTCGTGGATTAGTATCTTGTGCTGGAAGTGAACCTACTACAACTACGGTATTGGAACCTGTGACTTCCACAGAAAAACCAAAAGAAAAGAAAAAGAAAATAATACTCAAAGGTGAATAATGATAATTATATTTTCCCGAATCCGGAAATTCAGATCGCTGCGAGCTAGGCGAGTTCAGATGTCTAGACGGGGAGTGTCTTGATGTGTCACGAGTATTGGATGGACACGAAGACTGTTCAGATGCAAGCGATGAAAGTTAGTTTTGAATTTGATTCTTTACGAATCTTTTACTTCTTGAGACTACTGTGAAATGCACGACGGAGTGTGCAACACAGCCGCTCGATGCTCATTCCAACGGGATGTCGGTGCTTTTGGATGCGGATGCCCGAAAGGATTCGTTCGTAATCCGACTGGAATATGTGAAATTGAAGAAAATCGAATGAAAATTTGAAATTAATATTTCATTATTAAATTGTACATCAATTAATTAACAACATCGTTATGAGCAAATGGTTTAATGAGTGATGTAAAAATGAAGTTTTTAATTGAAAAACTGAATAGTTTTCGTATTCTCTGCACATTTAGACCCGTGATGAATGGAAATTTGGAAGAAAGGGGGAAGATTTTAATAACTTTCGTAAGGTGTTATCCTTGGAGTTTGTCCATAGATGACATTTGGATTCGAAGTTGTTATCATTCTCGACGATCTTGAATGAAATTGGCCTCCTTTCCAGCCTCTCATAGCTGCATATTGTTGTCGTTCCACATTTCGACGCCTTCTGGAAAAATTTTTTGTTGATAATCTTCTGATTTTTAAAAAATTAACACTCTCATAGAATGACCTTCTAACCTTTAACTTTGAGCTGAATCATCTCGACTCCTGTGGGAGATATTAAAAAGGTCAACTG</canonical>
            <polymorphic>TAAATGTGCGAAAACGATGAATTGTGTATTTGCAAAATGGTTGATGGATGGAAAAGACGATTGTGGTGATAGCAGTGATGAAGATGTTTGTGCTCGTGGATTAGTATCTTGTGCTGGAAGTGAACCTACTACAACTACGGTATTGGAACCTGTGACTTCCACAGAAAAACCAAAAGAAAAGAAAAAGAAAATAATACTCAAAGGTGAATAATGATAATTATATTTTCCCGAATCCGGAAATTCAGATCGCTGCGAGCTAGGCGAGTTCAGATGTCTAGACGGGGAGTGTCTTGATGTGTCACGAGTATTGGATGGACACGAAGACTGTTCAGATGCAAGCGATGAAAGTTAGTTTTGAATTTGATTCTTTACGAATCTTTTACTTCTTGAGACTACTGTGAAATGCACGACGGAGTGTGCAACACAGCCGCTCGATGCTCATTCCAACGGGATGTCGGTGCTTTTGGATGCGGATGCCCGAAAGGATTCGTTCGTAATCYGACTGGAATATGTGAAATTGAAGAAAATCGAATGAAAATTTGAAATTAATATTTCATTATTAAATTGTACATCAATTAATTAACAACATCGTTATGAGCAAATGGTTTAATGAGTGATGTAAAAATGAAGTTTTTAATTGAAAAACTGAATAGTTTTCGTATTCTCTGCACATTTAGACCCGTGATGAATGGAAATTTGGAAGAAAGGGGGAAGATTTTAATAACTTTCGTAAGGTGTTATCCTTGGAGTTTGTCCATAGATGACATTTGGATTCGAAGTTGTTATCATTCTCGACGATCTTGAATGAAATTGGCCTCCTTTCCAGCCTCTCATAGCTGCATATTGTTGTCGTTCCACATTTCGACGCCTTCTGGAAAAATTTTTTGTTGATAATCTTCTGATTTTTAAAAAATTAACACTCTCATAGAATGACCTTCTAACCTTTAACTTTGAGCTGAATCATCTCGACTCCTGTGGGAGATATTAAAAAGGTCAACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTCTTGAGACTACTGTGAAATG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTACATCACTCATTAAACCAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACTTCTTGAGACTACTGTGAAATGCACGACGGAGTGTGCAACACAGCCGCTCGATGCTCATTCCAACGGGATGTCGGTGCTTTTGGATGCGGATGCCCGAAAGGATTCGTTCGTAATCCGACTGGAATATGTGAAATTGAAGAAAATCGAATGAAAATTTGAAATTAATATTTCATTATTAAATTGTACATCAATTAATTAACAACATCGTTATGAGCAAATGGTTTAATGAGTGATGTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACTTCTTGAGACTACTGTGAAATGCACGACGGAGTGTGCAACACAGCCGCTCGATGCTCATTCCAACGGGATGTCGGTGCTTTTGGATGCGGATGCCCGAAAGGATTCGTTCGTAATCYGACTGGAATATGTGAAATTGAAGAAAATCGAATGAAAATTTGAAATTAATATTTCATTATTAAATTGTACATCAATTAATTAACAACATCGTTATGAGCAAATGGTTTAATGAGTGATGTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22104</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>294610</contig_pos>
        <strand></strand>
        <context>gttttcaaaa[A/T]atatattttg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGGAATTTCCATTTCACTTCGAGCTGCGATTCCAGCCGAGTTTTCAAAA</left_flank>
        <right_flank>ATATATTTTGACCTAAAATTTTAGCAATATGTTCCCTATAGTTTTTTCTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAGAACCTGAAATGCACTGTATAGGAAATACGGTATTCTAGGAATTTCAAAACTTTAATATTTATAACAGCAACACAAATATATGGAAATTTCAGACAGTAGTTCTCAGGCAAACATTTCGCACCCATAAGAATAAACTTTTTGATAGAAATTTTGAGAGAAAAAGGATTTCCTTCCTCTACCTATTATAATTGAAGCCAATCTTTTTTTAAAAACTTGTATTTCAAGAAAATTGTAAATTTTATGGGGTTATTCAGGTACACTGCAAAAAATGAGAAAAAAACTCACGAAAACTTGGAGACTGAACCAAGCTGACTGAAACTTAGGGGGAAACTGGAGAAAACTATTGGGAACAAACTATAGGGAACAAACTAAAACTATAGGGAACTATAGGGAACATACTGCTCGAAGTATCCACTTTGAAAATTTGGATAGAACTACTTCCAGCTGGAATTTCCATTTCACTTCGAGCTGCGATTCCAGCCGAGTTTTCAAAAAATATATTTTGACCTAAAATTTTAGCAATATGTTCCCTATAGTTTTTTCTTCACTTTTCCCCCAAATTTTCAGACAGATTGGTTCAGTCTCCATTCAGGAGTCGATCTTCAAATTTTCCATATACAGTAATCGTTGCATCAATTTCTCCATGTATCCTTATACCATACTGAACAAAATCGCATGATAGAAATTAGTTCCAGATACTGAGTGACCACAGTTCTCTAAACTATTTGTTGTCTATTTTCAGCAAAATGCTAATATATCACATGTGTCCTTCAAAACAGTTCTTCTTTGTCTCGTCATTTGATGGTATCTTCTTCCCTATGTCACATGTGTCCCTCAAAACGTACTAGTTTTCACTTTCCATTCTCCTCAATTTTCCATTTTTGTCCTTGAGAACGAACGTTTTTTTAGTAATTGCCTTGGGAAATAAATTACCAGAATCTCTTTCATTTTTAGTCGACGACTGACTTCTCCCAATGTTTTTATTCTTTTTTAGT</canonical>
            <polymorphic>TGGAGAACCTGAAATGCACTGTATAGGAAATACGGTATTCTAGGAATTTCAAAACTTTAATATTTATAACAGCAACACAAATATATGGAAATTTCAGACAGTAGTTCTCAGGCAAACATTTCGCACCCATAAGAATAAACTTTTTGATAGAAATTTTGAGAGAAAAAGGATTTCCTTCCTCTACCTATTATAATTGAAGCCAATCTTTTTTTAAAAACTTGTATTTCAAGAAAATTGTAAATTTTATGGGGTTATTCAGGTACACTGCAAAAAATGAGAAAAAAACTCACGAAAACTTGGAGACTGAACCAAGCTGACTGAAACTTAGGGGGAAACTGGAGAAAACTATTGGGAACAAACTATAGGGAACAAACTAAAACTATAGGGAACTATAGGGAACATACTGCTCGAAGTATCCACTTTGAAAATTTGGATAGAACTACTTCCAGCTGGAATTTCCATTTCACTTCGAGCTGCGATTCCAGCCGAGTTTTCAAAAWATATATTTTGACCTAAAATTTTAGCAATATGTTCCCTATAGTTTTTTCTTCACTTTTCCCCCAAATTTTCAGACAGATTGGTTCAGTCTCCATTCAGGAGTCGATCTTCAAATTTTCCATATACAGTAATCGTTGCATCAATTTCTCCATGTATCCTTATACCATACTGAACAAAATCGCATGATAGAAATTAGTTCCAGATACTGAGTGACCACAGTTCTCTAAACTATTTGTTGTCTATTTTCAGCAAAATGCTAATATATCACATGTGTCCTTCAAAACAGTTCTTCTTTGTCTCGTCATTTGATGGTATCTTCTTCCCTATGTCACATGTGTCCCTCAAAACGTACTAGTTTTCACTTTCCATTCTCCTCAATTTTCCATTTTTGTCCTTGAGAACGAACGTTTTTTTAGTAATTGCCTTGGGAAATAAATTACCAGAATCTCTTTCATTTTTAGTCGACGACTGACTTCTCCCAATGTTTTTATTCTTTTTTAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTTTGAAAATTTGGATAGAAC</pcr_primer_p1>
		<pcr_primer_p2>TGGTATAAGGATACATGGAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CACTTTGAAAATTTGGATAGAACTACTTCCAGCTGGAATTTCCATTTCACTTCGAGCTGCGATTCCAGCCGAGTTTTCAAAAAATATATTTTGACCTAAAATTTTAGCAATATGTTCCCTATAGTTTTTTCTTCACTTTTCCCCCAAATTTTCAGACAGATTGGTTCAGTCTCCATTCAGGAGTCGATCTTCAAATTTTCCATATACAGTAATCGTTGCATCAATTTCTCCATGTATCCTTATACCA</canonical_amplicon>
		<polymorphic_amplicon>CACTTTGAAAATTTGGATAGAACTACTTCCAGCTGGAATTTCCATTTCACTTCGAGCTGCGATTCCAGCCGAGTTTTCAAAAWATATATTTTGACCTAAAATTTTAGCAATATGTTCCCTATAGTTTTTTCTTCACTTTTCCCCCAAATTTTCAGACAGATTGGTTCAGTCTCCATTCAGGAGTCGATCTTCAAATTTTCCATATACAGTAATCGTTGCATCAATTTCTCCATGTATCCTTATACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22105</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>309168</contig_pos>
        <strand>+</strand>
        <context>ATAAACAACG[A/C]GGCGCAGAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCATGCCAACTGAATCAGTGGATTGACTTGATTTTCGGATATAAACAACG</left_flank>
        <right_flank>GGCGCAGAAGCAGTTCGTGCTACTAATGTCTTCTATCACTTGACATATGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTCACTGACAGATACGCAAGCTGGGATGATGATCTAGTTCCAGCCTTCCACTACGGAACTCATTATTCTACACCTGCGTTCACACTGAACTGGCTTCTCAGATTGGTTTGTCTTGCCACTGATATTTCTAAATGTTAATTTCTGATTTTCAGGAACCATTCGCTTCGATGTTTATAAACCTTCACGATGGAAAGTTTGACCATCCAGATCGTATCACACATTCAATCAAAGACAGCTGGGACCGGTGTCAACGAGACTCTCACGATGTGAAAGAGTTGATTCCAGAACTGTTCTACCTTCCAGAAATGTTCCGAAACTCGTCGAAATTCAATCTTGGAAGACGAGCTGACGGAACTCTCGTGGATGATGTTGTGTTACCTCCGTGGGCTGAATCTCCTGAACACTTTGTACTCATGCATAGACAAGCTCTTGAATCTGATCTGGTATCATGCCAACTGAATCAGTGGATTGACTTGATTTTCGGATATAAACAACGCGGCGCAGAAGCAGTTCGTGCTACTAATGTCTTCTATCACTTGACATATGAAGGAACAGTGACTCAAAAAATGGCTGAAACACCCGGACAAGTATCTGCAATTGAGCAGCAGATTCTTTCTTTTGGACAAACACCGTCCCAACTACTCGCAGAAGCTCATCCACCAAGACATTCTATTATGACAATGGCACCAACAATGTTCAGAAGACACGATGATGATCTGTGCATGATGATGAAATACATTTCAAATAGTCCAGTTGTGTACCTTGCTGCCAACACTTTCCATCAACTACCACATCCTACCGTTGTTGGAGTTGCTCAAAATCTAGTGTTTTCGTTGAATAAGTGGGATAACTCTTATAGTTGTGAGTCTTAATAAGACATTTCTTACACCAGGCCGATATTTTCAGACGGATCCACCCAAAGAAGCGCTCTCTCAATGGATCCATCAAACGTTGAAGGGCAAGTAGCCCTTCCTCTGACGGCTGATCCTCAATTGGC</canonical>
            <polymorphic>TTTTTCACTGACAGATACGCAAGCTGGGATGATGATCTAGTTCCAGCCTTCCACTACGGAACTCATTATTCTACACCTGCGTTCACACTGAACTGGCTTCTCAGATTGGTTTGTCTTGCCACTGATATTTCTAAATGTTAATTTCTGATTTTCAGGAACCATTCGCTTCGATGTTTATAAACCTTCACGATGGAAAGTTTGACCATCCAGATCGTATCACACATTCAATCAAAGACAGCTGGGACCGGTGTCAACGAGACTCTCACGATGTGAAAGAGTTGATTCCAGAACTGTTCTACCTTCCAGAAATGTTCCGAAACTCGTCGAAATTCAATCTTGGAAGACGAGCTGACGGAACTCTCGTGGATGATGTTGTGTTACCTCCGTGGGCTGAATCTCCTGAACACTTTGTACTCATGCATAGACAAGCTCTTGAATCTGATCTGGTATCATGCCAACTGAATCAGTGGATTGACTTGATTTTCGGATATAAACAACGMGGCGCAGAAGCAGTTCGTGCTACTAATGTCTTCTATCACTTGACATATGAAGGAACAGTGACTCAAAAAATGGCTGAAACACCCGGACAAGTATCTGCAATTGAGCAGCAGATTCTTTCTTTTGGACAAACACCGTCCCAACTACTCGCAGAAGCTCATCCACCAAGACATTCTATTATGACAATGGCACCAACAATGTTCAGAAGACACGATGATGATCTGTGCATGATGATGAAATACATTTCAAATAGTCCAGTTGTGTACCTTGCTGCCAACACTTTCCATCAACTACCACATCCTACCGTTGTTGGAGTTGCTCAAAATCTAGTGTTTTCGTTGAATAAGTGGGATAACTCTTATAGTTGTGAGTCTTAATAAGACATTTCTTACACCAGGCCGATATTTTCAGACGGATCCACCCAAAGAAGCGCTCTCTCAATGGATCCATCAAACGTTGAAGGGCAAGTAGCCCTTCCTCTGACGGCTGATCCTCAATTGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>502 229 163 106</canonical_bands>
                <polymorphic_bands>608 229 163</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTCTTGAATCTGATCTGGTAT</pcr_primer_p1>
		<pcr_primer_p2>TAATAGAATGTCTTGGTGGATGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTCTTGAATCTGATCTGGTATCATGCCAACTGAATCAGTGGATTGACTTGATTTTCGGATATAAACAACGCGGCGCAGAAGCAGTTCGTGCTACTAATGTCTTCTATCACTTGACATATGAAGGAACAGTGACTCAAAAAATGGCTGAAACACCCGGACAAGTATCTGCAATTGAGCAGCAGATTCTTTCTTTTGGACAAACACCGTCCCAACTACTCGCAGAAGCTCATCCACCAAGACATTCTATTA</canonical_amplicon>
		<polymorphic_amplicon>GCTCTTGAATCTGATCTGGTATCATGCCAACTGAATCAGTGGATTGACTTGATTTTCGGATATAAACAACGMGGCGCAGAAGCAGTTCGTGCTACTAATGTCTTCTATCACTTGACATATGAAGGAACAGTGACTCAAAAAATGGCTGAAACACCCGGACAAGTATCTGCAATTGAGCAGCAGATTCTTTCTTTTGGACAAACACCGTCCCAACTACTCGCAGAAGCTCATCCACCAAGACATTCTATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22106</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>309262</contig_pos>
        <strand>+</strand>
        <context>CGGACAAGTA[G/T]CTGCAATTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATATGAAGGAACAGTGACTCAAAAAATGGCTGAAACACCCGGACAAGTA</left_flank>
        <right_flank>CTGCAATTGAGCAGCAGATTCTTTCTTTTGGACAAACACCGTCCCAACTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTTCTCAGATTGGTTTGTCTTGCCACTGATATTTCTAAATGTTAATTTCTGATTTTCAGGAACCATTCGCTTCGATGTTTATAAACCTTCACGATGGAAAGTTTGACCATCCAGATCGTATCACACATTCAATCAAAGACAGCTGGGACCGGTGTCAACGAGACTCTCACGATGTGAAAGAGTTGATTCCAGAACTGTTCTACCTTCCAGAAATGTTCCGAAACTCGTCGAAATTCAATCTTGGAAGACGAGCTGACGGAACTCTCGTGGATGATGTTGTGTTACCTCCGTGGGCTGAATCTCCTGAACACTTTGTACTCATGCATAGACAAGCTCTTGAATCTGATCTGGTATCATGCCAACTGAATCAGTGGATTGACTTGATTTTCGGATATAAACAACGCGGCGCAGAAGCAGTTCGTGCTACTAATGTCTTCTATCACTTGACATATGAAGGAACAGTGACTCAAAAAATGGCTGAAACACCCGGACAAGTATCTGCAATTGAGCAGCAGATTCTTTCTTTTGGACAAACACCGTCCCAACTACTCGCAGAAGCTCATCCACCAAGACATTCTATTATGACAATGGCACCAACAATGTTCAGAAGACACGATGATGATCTGTGCATGATGATGAAATACATTTCAAATAGTCCAGTTGTGTACCTTGCTGCCAACACTTTCCATCAACTACCACATCCTACCGTTGTTGGAGTTGCTCAAAATCTAGTGTTTTCGTTGAATAAGTGGGATAACTCTTATAGTTGTGAGTCTTAATAAGACATTTCTTACACCAGGCCGATATTTTCAGACGGATCCACCCAAAGAAGCGCTCTCTCAATGGATCCATCAAACGTTGAAGGGCAAGTAGCCCTTCCTCTGACGGCTGATCCTCAATTGGCCACAGCGGCTTCTACGACTCCAATTGCACGTCGTCATCTGGGTGATGCATTCGATCAAAGACTTCAAGTACAATGCTCGAATTTCGTTACAACC</canonical>
            <polymorphic>GGCTTCTCAGATTGGTTTGTCTTGCCACTGATATTTCTAAATGTTAATTTCTGATTTTCAGGAACCATTCGCTTCGATGTTTATAAACCTTCACGATGGAAAGTTTGACCATCCAGATCGTATCACACATTCAATCAAAGACAGCTGGGACCGGTGTCAACGAGACTCTCACGATGTGAAAGAGTTGATTCCAGAACTGTTCTACCTTCCAGAAATGTTCCGAAACTCGTCGAAATTCAATCTTGGAAGACGAGCTGACGGAACTCTCGTGGATGATGTTGTGTTACCTCCGTGGGCTGAATCTCCTGAACACTTTGTACTCATGCATAGACAAGCTCTTGAATCTGATCTGGTATCATGCCAACTGAATCAGTGGATTGACTTGATTTTCGGATATAAACAACGCGGCGCAGAAGCAGTTCGTGCTACTAATGTCTTCTATCACTTGACATATGAAGGAACAGTGACTCAAAAAATGGCTGAAACACCCGGACAAGTAKCTGCAATTGAGCAGCAGATTCTTTCTTTTGGACAAACACCGTCCCAACTACTCGCAGAAGCTCATCCACCAAGACATTCTATTATGACAATGGCACCAACAATGTTCAGAAGACACGATGATGATCTGTGCATGATGATGAAATACATTTCAAATAGTCCAGTTGTGTACCTTGCTGCCAACACTTTCCATCAACTACCACATCCTACCGTTGTTGGAGTTGCTCAAAATCTAGTGTTTTCGTTGAATAAGTGGGATAACTCTTATAGTTGTGAGTCTTAATAAGACATTTCTTACACCAGGCCGATATTTTCAGACGGATCCACCCAAAGAAGCGCTCTCTCAATGGATCCATCAAACGTTGAAGGGCAAGTAGCCCTTCCTCTGACGGCTGATCCTCAATTGGCCACAGCGGCTTCTACGACTCCAATTGCACGTCGTCATCTGGGTGATGCATTCGATCAAAGACTTCAAGTACAATGCTCGAATTTCGTTACAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTGCTACTAATGTCTTCTATCAC</pcr_primer_p1>
		<pcr_primer_p2>GGTACACAACTGGACTATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTGCTACTAATGTCTTCTATCACTTGACATATGAAGGAACAGTGACTCAAAAAATGGCTGAAACACCCGGACAAGTATCTGCAATTGAGCAGCAGATTCTTTCTTTTGGACAAACACCGTCCCAACTACTCGCAGAAGCTCATCCACCAAGACATTCTATTATGACAATGGCACCAACAATGTTCAGAAGACACGATGATGATCTGTGCATGATGATGAAATACATTTCAAATAGTCCAGTTGTGTACC</canonical_amplicon>
		<polymorphic_amplicon>CGTGCTACTAATGTCTTCTATCACTTGACATATGAAGGAACAGTGACTCAAAAAATGGCTGAAACACCCGGACAAGTAKCTGCAATTGAGCAGCAGATTCTTTCTTTTGGACAAACACCGTCCCAACTACTCGCAGAAGCTCATCCACCAAGACATTCTATTATGACAATGGCACCAACAATGTTCAGAAGACACGATGATGATCTGTGCATGATGATGAAATACATTTCAAATAGTCCAGTTGTGTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22107</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>310963</contig_pos>
        <strand></strand>
        <context>ATTCCTTTCC[T/A]AATGGTCGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTTTCTAATGTATTGCATTGTTTTTTTTTTCAAATTTATATTCCTTTCC</left_flank>
        <right_flank>AATGGTCGCTCGATCTTTTTTCTCACTCCTGCTCCGAAAATCATCAAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAGTGACGGGAGCAGTGAACGGACGGATTACAATTTGGAGAATGTTCCCACTAAACAAGTTGTATACATATCAAGTAAGGAATGAGTTTTGCCGAAATCATATAAATCATTGATTTTCAGCCACTCAATAGTGCCGTTAGATCTGTAGCAGTAGTAGCCTCTCATCGATTCATTTTGGGTGGTTTAGACTCTGGAGCAATCGTCGTTTTTAATGCGGATTTCAATCGCTGGCATTACGAATACAAACATCGTTACATCCAGAACAGTTCGGCAACGAAGCCGGCTCAAGCGTCACCTCAAAAATGAATTCAAGATTTCAGTGTATAAATTATTTAATGTTCCGGGGACGGTTTTCATAGTTTCAATAAGTCAATTGTGATATCATTTATACTGTGGTTGTGATTGTTATCGTCTTCTGGTCCGTACAGATTTTGCTAACAGCTAATATTTTTTCTAATGTATTGCATTGTTTTTTTTTTCAAATTTATATTCCTTTCCTAATGGTCGCTCGATCTTTTTTCTCACTCCTGCTCCGAAAATCATCAAATTTCGTGTAATAAATTGATTTTAATAATTTAAAATGTTTTTTTTTTAATTTATGTGAAAGAATTGAATAGTTAACTGAAAAATGCACAACAATGCGTTCGAATATCGCATCACTCCTACTTACTCAAAGGAACATATTCGGTAGCAACAGAGTGGTCTCGACACGCGTACAGTACTCCGTCTTTCAATTTTGCGCGGCTTGCTTGCGAGTTTTTCCTGTTTCCTGAGCGATTCCTTTGACGGGAATGCGGTTTTGCTCGGTTCGACAACGATATTTTGAGCATTAACTTTTTTTGAAACATAAAAGTGAAGTTCTGGTCAAAATAGTTTATTTTTCAGATGTTGAGCCGTTTGTCTTCCCCACAACTATGTTCTCGCATTGTAGTGGTCACTCGGGGAGTCGCTAGTGCAGGACGTTAGTTTTACTTATCAAATCTTTAATTTTGATAGCAT</canonical>
            <polymorphic>GCAGTGACGGGAGCAGTGAACGGACGGATTACAATTTGGAGAATGTTCCCACTAAACAAGTTGTATACATATCAAGTAAGGAATGAGTTTTGCCGAAATCATATAAATCATTGATTTTCAGCCACTCAATAGTGCCGTTAGATCTGTAGCAGTAGTAGCCTCTCATCGATTCATTTTGGGTGGTTTAGACTCTGGAGCAATCGTCGTTTTTAATGCGGATTTCAATCGCTGGCATTACGAATACAAACATCGTTACATCCAGAACAGTTCGGCAACGAAGCCGGCTCAAGCGTCACCTCAAAAATGAATTCAAGATTTCAGTGTATAAATTATTTAATGTTCCGGGGACGGTTTTCATAGTTTCAATAAGTCAATTGTGATATCATTTATACTGTGGTTGTGATTGTTATCGTCTTCTGGTCCGTACAGATTTTGCTAACAGCTAATATTTTTTCTAATGTATTGCATTGTTTTTTTTTTCAAATTTATATTCCTTTCCWAATGGTCGCTCGATCTTTTTTCTCACTCCTGCTCCGAAAATCATCAAATTTCGTGTAATAAATTGATTTTAATAATTTAAAATGTTTTTTTTTTAATTTATGTGAAAGAATTGAATAGTTAACTGAAAAATGCACAACAATGCGTTCGAATATCGCATCACTCCTACTTACTCAAAGGAACATATTCGGTAGCAACAGAGTGGTCTCGACACGCGTACAGTACTCCGTCTTTCAATTTTGCGCGGCTTGCTTGCGAGTTTTTCCTGTTTCCTGAGCGATTCCTTTGACGGGAATGCGGTTTTGCTCGGTTCGACAACGATATTTTGAGCATTAACTTTTTTTGAAACATAAAAGTGAAGTTCTGGTCAAAATAGTTTATTTTTCAGATGTTGAGCCGTTTGTCTTCCCCACAACTATGTTCTCGCATTGTAGTGGTCACTCGGGGAGTCGCTAGTGCAGGACGTTAGTTTTACTTATCAAATCTTTAATTTTGATAGCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGTACAGATTTTGCTAACAG</pcr_primer_p1>
		<pcr_primer_p2>TAAGTAGGAGTGATGCGATATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCGTACAGATTTTGCTAACAGCTAATATTTTTTCTAATGTATTGCATTGTTTTTTTTTTCAAATTTATATTCCTTTCCTAATGGTCGCTCGATCTTTTTTCTCACTCCTGCTCCGAAAATCATCAAATTTCGTGTAATAAATTGATTTTAATAATTTAAAATGTTTTTTTTTTAATTTATGTGAAAGAATTGAATAGTTAACTGAAAAATGCACAACAATGCGTTCGAATATCGCATCACTCCTACTTA</canonical_amplicon>
		<polymorphic_amplicon>CCGTACAGATTTTGCTAACAGCTAATATTTTTTCTAATGTATTGCATTGTTTTTTTTTTCAAATTTATATTCCTTTCCWAATGGTCGCTCGATCTTTTTTCTCACTCCTGCTCCGAAAATCATCAAATTTCGTGTAATAAATTGATTTTAATAATTTAAAATGTTTTTTTTTTAATTTATGTGAAAGAATTGAATAGTTAACTGAAAAATGCACAACAATGCGTTCGAATATCGCATCACTCCTACTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22108</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>311101</contig_pos>
        <strand>+</strand>
        <context>AAATGCACAA[A/C]AATGCGTTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTTTTAATTTATGTGAAAGAATTGAATAGTTAACTGAAAAATGCACAA</left_flank>
        <right_flank>AATGCGTTCGAATATCGCATCACTCCTACTTACTCAAAGGAACATATTCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGATCTGTAGCAGTAGTAGCCTCTCATCGATTCATTTTGGGTGGTTTAGACTCTGGAGCAATCGTCGTTTTTAATGCGGATTTCAATCGCTGGCATTACGAATACAAACATCGTTACATCCAGAACAGTTCGGCAACGAAGCCGGCTCAAGCGTCACCTCAAAAATGAATTCAAGATTTCAGTGTATAAATTATTTAATGTTCCGGGGACGGTTTTCATAGTTTCAATAAGTCAATTGTGATATCATTTATACTGTGGTTGTGATTGTTATCGTCTTCTGGTCCGTACAGATTTTGCTAACAGCTAATATTTTTTCTAATGTATTGCATTGTTTTTTTTTTCAAATTTATATTCCTTTCCTAATGGTCGCTCGATCTTTTTTCTCACTCCTGCTCCGAAAATCATCAAATTTCGTGTAATAAATTGATTTTAATAATTTAAAATGTTTTTTTTTTAATTTATGTGAAAGAATTGAATAGTTAACTGAAAAATGCACAACAATGCGTTCGAATATCGCATCACTCCTACTTACTCAAAGGAACATATTCGGTAGCAACAGAGTGGTCTCGACACGCGTACAGTACTCCGTCTTTCAATTTTGCGCGGCTTGCTTGCGAGTTTTTCCTGTTTCCTGAGCGATTCCTTTGACGGGAATGCGGTTTTGCTCGGTTCGACAACGATATTTTGAGCATTAACTTTTTTTGAAACATAAAAGTGAAGTTCTGGTCAAAATAGTTTATTTTTCAGATGTTGAGCCGTTTGTCTTCCCCACAACTATGTTCTCGCATTGTAGTGGTCACTCGGGGAGTCGCTAGTGCAGGACGTTAGTTTTACTTATCAAATCTTTAATTTTGATAGCATTGCAGAAGTCACGGCTCATTCGTCGGATAACAGCATTGGCTTTTTCGAGAAGATTTCCTACCGGTTCAAAGGTTTGTTATCATAGATTATCATTACGAACACAATAATTATTGCAGGAGTTCCTCTGCCAACAGAGAC</canonical>
            <polymorphic>TAGATCTGTAGCAGTAGTAGCCTCTCATCGATTCATTTTGGGTGGTTTAGACTCTGGAGCAATCGTCGTTTTTAATGCGGATTTCAATCGCTGGCATTACGAATACAAACATCGTTACATCCAGAACAGTTCGGCAACGAAGCCGGCTCAAGCGTCACCTCAAAAATGAATTCAAGATTTCAGTGTATAAATTATTTAATGTTCCGGGGACGGTTTTCATAGTTTCAATAAGTCAATTGTGATATCATTTATACTGTGGTTGTGATTGTTATCGTCTTCTGGTCCGTACAGATTTTGCTAACAGCTAATATTTTTTCTAATGTATTGCATTGTTTTTTTTTTCAAATTTATATTCCTTTCCTAATGGTCGCTCGATCTTTTTTCTCACTCCTGCTCCGAAAATCATCAAATTTCGTGTAATAAATTGATTTTAATAATTTAAAATGTTTTTTTTTTAATTTATGTGAAAGAATTGAATAGTTAACTGAAAAATGCACAAMAATGCGTTCGAATATCGCATCACTCCTACTTACTCAAAGGAACATATTCGGTAGCAACAGAGTGGTCTCGACACGCGTACAGTACTCCGTCTTTCAATTTTGCGCGGCTTGCTTGCGAGTTTTTCCTGTTTCCTGAGCGATTCCTTTGACGGGAATGCGGTTTTGCTCGGTTCGACAACGATATTTTGAGCATTAACTTTTTTTGAAACATAAAAGTGAAGTTCTGGTCAAAATAGTTTATTTTTCAGATGTTGAGCCGTTTGTCTTCCCCACAACTATGTTCTCGCATTGTAGTGGTCACTCGGGGAGTCGCTAGTGCAGGACGTTAGTTTTACTTATCAAATCTTTAATTTTGATAGCATTGCAGAAGTCACGGCTCATTCGTCGGATAACAGCATTGGCTTTTTCGAGAAGATTTCCTACCGGTTCAAAGGTTTGTTATCATAGATTATCATTACGAACACAATAATTATTGCAGGAGTTCCTCTGCCAACAGAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTGCTAACAGCTAATATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TACCGAATATGTTCCTTTGAGT</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>GATTTTGCTAACAGCTAATATTTTTTCTAATGTATTGCATTGTTTTTTTTTTCAAATTTATATTCCTTTCCTAATGGTCGCTCGATCTTTTTTCTCACTCCTGCTCCGAAAATCATCAAATTTCGTGTAATAAATTGATTTTAATAATTTAAAATGTTTTTTTTTTAATTTATGTGAAAGAATTGAATAGTTAACTGAAAAATGCACAACAATGCGTTCGAATATCGCATCACTCCTACTTACTCAAAGGAACATATTCGGTA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTGCTAACAGCTAATATTTTTTCTAATGTATTGCATTGTTTTTTTTTTCAAATTTATATTCCTTTCCTAATGGTCGCTCGATCTTTTTTCTCACTCCTGCTCCGAAAATCATCAAATTTCGTGTAATAAATTGATTTTAATAATTTAAAATGTTTTTTTTTTAATTTATGTGAAAGAATTGAATAGTTAACTGAAAAATGCACAAMAATGCGTTCGAATATCGCATCACTCCTACTTACTCAAAGGAACATATTCGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22109</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>402017</contig_pos>
        <strand>+</strand>
        <context>TGACCTTAGG[A/T]GGTGGAAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACGCAGAGGACCCCCGCAATAATGCAATTACGTCATTGGTGACCTTAGG</left_flank>
        <right_flank>GGTGGAAAAGAGAACGGACGGACGGACGGGGTGGTGGTGGTGGGTGACGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAATGTGTTAAGTTTACGGAAAATAGATAAACAAGTGATTCACTTAGAAGCTGTCAACAACGGGAGACCTTTTTTTCGAAAATTGGGAAAACCATTTACTTTCGGAAATCGTAGGATCTAGTCAACGAATGGGAAAAAAGTCGAAAATGGTTTCAGATTCTTTCGAAAAAAGGTTTTCAGTTCAAAATCACATTAAGGGATCAAAAACGACAAATAGATTTCCAGCGCAAAATCCCAGTAATCGTTTCAGAGACAGCAAGTTAAATCAGGAAAATGTTAAAGTTCTTTTAAGACTTAGAATTAGAGTTGCAAAGCTGTCCAAAAGTGGGAATTGTACAAAAAATCACAAAAAAGTGTTCACAAAAAAAAGCGAACGGAAAACAATCAATACACTCATTCGAACAGGCCCGTCACCATGGTTGAGAGGATGGTGAAAGGTGAACAAAGAAACGCAGAGGACCCCCGCAATAATGCAATTACGTCATTGGTGACCTTAGGAGGTGGAAAAGAGAACGGACGGACGGACGGGGTGGTGGTGGTGGGTGACGATTCGGGATGAATAAAAAGAAGAACAGGAGGAGGCACAACACATACCGTTCGACTAATTAATGATCAAAAGAAGACATGGGTGGTAATGGGTTGTGAAGGGTCCTTTCTAAGGAAATTGATATGTTTTGGGTAGTTTTCTGGAGAAGAAAAGAGAAAGTATTAACGAGAATGATTTTTTCCATTGTTTCTCGGAACAGTTCCTGATCTCAATATGTTTTGTTAGAAGATGTTAATGTTCATTGTGTATCTAAACCACGGTGTTTTTTCGGAACTTCTAATACAGTAAACTGGTAATAGAAGGACCTCCTAACTTTCAACTTTGAGCCAATTTTTCTTGATTTCTGTCAAAGATACGAACACTTTGTCAACTGATATATTTCTTTTCATAATATCAGAAGTGTTTTGCGAATTAAGACATTTTGATATCTTTTACGGGAACCGAGATAAATT</canonical>
            <polymorphic>CTAATGTGTTAAGTTTACGGAAAATAGATAAACAAGTGATTCACTTAGAAGCTGTCAACAACGGGAGACCTTTTTTTCGAAAATTGGGAAAACCATTTACTTTCGGAAATCGTAGGATCTAGTCAACGAATGGGAAAAAAGTCGAAAATGGTTTCAGATTCTTTCGAAAAAAGGTTTTCAGTTCAAAATCACATTAAGGGATCAAAAACGACAAATAGATTTCCAGCGCAAAATCCCAGTAATCGTTTCAGAGACAGCAAGTTAAATCAGGAAAATGTTAAAGTTCTTTTAAGACTTAGAATTAGAGTTGCAAAGCTGTCCAAAAGTGGGAATTGTACAAAAAATCACAAAAAAGTGTTCACAAAAAAAAGCGAACGGAAAACAATCAATACACTCATTCGAACAGGCCCGTCACCATGGTTGAGAGGATGGTGAAAGGTGAACAAAGAAACGCAGAGGACCCCCGCAATAATGCAATTACGTCATTGGTGACCTTAGGWGGTGGAAAAGAGAACGGACGGACGGACGGGGTGGTGGTGGTGGGTGACGATTCGGGATGAATAAAAAGAAGAACAGGAGGAGGCACAACACATACCGTTCGACTAATTAATGATCAAAAGAAGACATGGGTGGTAATGGGTTGTGAAGGGTCCTTTCTAAGGAAATTGATATGTTTTGGGTAGTTTTCTGGAGAAGAAAAGAGAAAGTATTAACGAGAATGATTTTTTCCATTGTTTCTCGGAACAGTTCCTGATCTCAATATGTTTTGTTAGAAGATGTTAATGTTCATTGTGTATCTAAACCACGGTGTTTTTTCGGAACTTCTAATACAGTAAACTGGTAATAGAAGGACCTCCTAACTTTCAACTTTGAGCCAATTTTTCTTGATTTCTGTCAAAGATACGAACACTTTGTCAACTGATATATTTCTTTTCATAATATCAGAAGTGTTTTGCGAATTAAGACATTTTGATATCTTTTACGGGAACCGAGATAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACGGAAAACAATCAATACACT</pcr_primer_p1>
		<pcr_primer_p2>CATTAATTAGTCGAACGGTATGT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AACGGAAAACAATCAATACACTCATTCGAACAGGCCCGTCACCATGGTTGAGAGGATGGTGAAAGGTGAACAAAGAAACGCAGAGGACCCCCGCAATAATGCAATTACGTCATTGGTGACCTTAGGAGGTGGAAAAGAGAACGGACGGACGGACGGGGTGGTGGTGGTGGGTGACGATTCGGGATGAATAAAAAGAAGAACAGGAGGAGGCACAACACATACCGTTCGACTAATTAATG</canonical_amplicon>
		<polymorphic_amplicon>AACGGAAAACAATCAATACACTCATTCGAACAGGCCCGTCACCATGGTTGAGAGGATGGTGAAAGGTGAACAAAGAAACGCAGAGGACCCCCGCAATAATGCAATTACGTCATTGGTGACCTTAGGWGGTGGAAAAGAGAACGGACGGACGGACGGGGTGGTGGTGGTGGGTGACGATTCGGGATGAATAAAAAGAAGAACAGGAGGAGGCACAACACATACCGTTCGACTAATTAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22110</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>401771</contig_pos>
        <strand>+</strand>
        <context>CGTTTCAGAG[A/C]CAGCAAGTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAAACGACAAATAGATTTCCAGCGCAAAATCCCAGTAATCGTTTCAGAG</left_flank>
        <right_flank>CAGCAAGTTAAATCAGGAAAATGTTAAAGTTCTTTTAAGACTTAGAATTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTGTCAAACAAAAAGGTTTTGAAGTGGTTGACGGGGGATGCAGGTAGAAATTGAATTGGGGAGGCTTGTTGTGTGGAAAAGAAGCAACGAAGAACGACCAGTTTGTACTAGACGCCTATAGGTGATGTGATCAGGATGATGATTCGTGCCCAGTTGTGTTTGGGGCTGGATCTGACAACAAACTGAATTGAATTGTATGCTAAAAGAGTTTTTTCAGAGTATCTACACAAGAAGAAAGTGAATACTAATGTGTTAAGTTTACGGAAAATAGATAAACAAGTGATTCACTTAGAAGCTGTCAACAACGGGAGACCTTTTTTTCGAAAATTGGGAAAACCATTTACTTTCGGAAATCGTAGGATCTAGTCAACGAATGGGAAAAAAGTCGAAAATGGTTTCAGATTCTTTCGAAAAAAGGTTTTCAGTTCAAAATCACATTAAGGGATCAAAAACGACAAATAGATTTCCAGCGCAAAATCCCAGTAATCGTTTCAGAGACAGCAAGTTAAATCAGGAAAATGTTAAAGTTCTTTTAAGACTTAGAATTAGAGTTGCAAAGCTGTCCAAAAGTGGGAATTGTACAAAAAATCACAAAAAAGTGTTCACAAAAAAAAGCGAACGGAAAACAATCAATACACTCATTCGAACAGGCCCGTCACCATGGTTGAGAGGATGGTGAAAGGTGAACAAAGAAACGCAGAGGACCCCCGCAATAATGCAATTACGTCATTGGTGACCTTAGGAGGTGGAAAAGAGAACGGACGGACGGACGGGGTGGTGGTGGTGGGTGACGATTCGGGATGAATAAAAAGAAGAACAGGAGGAGGCACAACACATACCGTTCGACTAATTAATGATCAAAAGAAGACATGGGTGGTAATGGGTTGTGAAGGGTCCTTTCTAAGGAAATTGATATGTTTTGGGTAGTTTTCTGGAGAAGAAAAGAGAAAGTATTAACGAGAATGATTTTTTCCATTGTTTCTCGGAACAGTTCCTGA</canonical>
            <polymorphic>AGGTGTCAAACAAAAAGGTTTTGAAGTGGTTGACGGGGGATGCAGGTAGAAATTGAATTGGGGAGGCTTGTTGTGTGGAAAAGAAGCAACGAAGAACGACCAGTTTGTACTAGACGCCTATAGGTGATGTGATCAGGATGATGATTCGTGCCCAGTTGTGTTTGGGGCTGGATCTGACAACAAACTGAATTGAATTGTATGCTAAAAGAGTTTTTTCAGAGTATCTACACAAGAAGAAAGTGAATACTAATGTGTTAAGTTTACGGAAAATAGATAAACAAGTGATTCACTTAGAAGCTGTCAACAACGGGAGACCTTTTTTTCGAAAATTGGGAAAACCATTTACTTTCGGAAATCGTAGGATCTAGTCAACGAATGGGAAAAAAGTCGAAAATGGTTTCAGATTCTTTCGAAAAAAGGTTTTCAGTTCAAAATCACATTAAGGGATCAAAAACGACAAATAGATTTCCAGCGCAAAATCCCAGTAATCGTTTCAGAGMCAGCAAGTTAAATCAGGAAAATGTTAAAGTTCTTTTAAGACTTAGAATTAGAGTTGCAAAGCTGTCCAAAAGTGGGAATTGTACAAAAAATCACAAAAAAGTGTTCACAAAAAAAAGCGAACGGAAAACAATCAATACACTCATTCGAACAGGCCCGTCACCATGGTTGAGAGGATGGTGAAAGGTGAACAAAGAAACGCAGAGGACCCCCGCAATAATGCAATTACGTCATTGGTGACCTTAGGAGGTGGAAAAGAGAACGGACGGACGGACGGGGTGGTGGTGGTGGGTGACGATTCGGGATGAATAAAAAGAAGAACAGGAGGAGGCACAACACATACCGTTCGACTAATTAATGATCAAAAGAAGACATGGGTGGTAATGGGTTGTGAAGGGTCCTTTCTAAGGAAATTGATATGTTTTGGGTAGTTTTCTGGAGAAGAAAAGAGAAAGTATTAACGAGAATGATTTTTTCCATTGTTTCTCGGAACAGTTCCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTACTTTCGGAAATCGTAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGTACAATTCCCACTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTTACTTTCGGAAATCGTAGGATCTAGTCAACGAATGGGAAAAAAGTCGAAAATGGTTTCAGATTCTTTCGAAAAAAGGTTTTCAGTTCAAAATCACATTAAGGGATCAAAAACGACAAATAGATTTCCAGCGCAAAATCCCAGTAATCGTTTCAGAGACAGCAAGTTAAATCAGGAAAATGTTAAAGTTCTTTTAAGACTTAGAATTAGAGTTGCAAAGCTGTCCAAAAGTGGGAATTGTACAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CATTTACTTTCGGAAATCGTAGGATCTAGTCAACGAATGGGAAAAAAGTCGAAAATGGTTTCAGATTCTTTCGAAAAAAGGTTTTCAGTTCAAAATCACATTAAGGGATCAAAAACGACAAATAGATTTCCAGCGCAAAATCCCAGTAATCGTTTCAGAGMCAGCAAGTTAAATCAGGAAAATGTTAAAGTTCTTTTAAGACTTAGAATTAGAGTTGCAAAGCTGTCCAAAAGTGGGAATTGTACAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22111</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>596320</contig_pos>
        <strand>+</strand>
        <context>TCTTTGGTCC[C/T]TGTTCTCTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAATGTGTTTTCTTCGATTGCTGATTCTTATTTGACACTTCTTTGGTCC</left_flank>
        <right_flank>TGTTCTCTATCACCAAACCAGAAGACACTGATGTCATTGAAAATCATAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCATTTTTGGATGATAGCCTAAGTTTTGCAAGTTTACTCTTCTAGGCCACAATGGTAAATATTTTCAGATTAAGCGCGTACTACATTTTCACATATCGCGAAGATCCATATCGATATACGGTTCGAACTCATTGGCAATCGGAAGAACCGATGCTGGTGGCTGAAGCCTTGTTTGCTGTTGGAAACGTCTTCTCATTTGCTAGAATCATTTATCTCTTTCAGACGAATCCTTACTTGGGACCACTTCAGGTTTTGTAAATGAACTGAACTGTTTTTCAAAATAAAACTTTTCAGATCTCCCTCGGATGTATGCTTGTGGATGTTGCGAAATTCTGTTTCATTTTTGTCCTTATCATCAGCTCCTTCTCAATTGGACTGGCTCAACTTTACTGGTACTATGATCCGAATACGGATGTCTGCGTACCCGGTTCCACGTGTAGATCAAGTACAAATGTGTTTTCTTCGATTGCTGATTCTTATTTGACACTTCTTTGGTCCTTGTTCTCTATCACCAAACCAGAAGACACTGATGTCATTGAAAATCATAAAATCACGCAGTGGGTTGGTCAAGGAATGTTCATTATGTACCACTGCACTTCAATCATTGTACTTCTGAATATGTTAATTGCCATGATGTCTCATTCTTTCCAAATTATCAATGATCATGCCGATCTGGAGTGGAAATTCCATCGAACTAAACTCTGGATGGCTCATTTCGATGAAGGGTCCAGTCTTCCACCTCCATTCAACATCATTATCACACCGAAATCTCTTATCAATTTCGTGAATTGCCTTCTGAATACAGTAAGATGGCTGTTAGGGAAATACACGTATCAGAAGAATCGGAATCGAGCAACGATTCGGGTAAGTTTGGCATAAAAGACAATGAGATAGAGTAAGAAAGCATTTCAGCGCCCTGGCTACTCTCGAAAAAGGAATGAAATGGAAAAATCTGGAGGTCAAGATGATGATTCTGGAAAGGCACCGTTGACATATGCA</canonical>
            <polymorphic>TCCATTTTTGGATGATAGCCTAAGTTTTGCAAGTTTACTCTTCTAGGCCACAATGGTAAATATTTTCAGATTAAGCGCGTACTACATTTTCACATATCGCGAAGATCCATATCGATATACGGTTCGAACTCATTGGCAATCGGAAGAACCGATGCTGGTGGCTGAAGCCTTGTTTGCTGTTGGAAACGTCTTCTCATTTGCTAGAATCATTTATCTCTTTCAGACGAATCCTTACTTGGGACCACTTCAGGTTTTGTAAATGAACTGAACTGTTTTTCAAAATAAAACTTTTCAGATCTCCCTCGGATGTATGCTTGTGGATGTTGCGAAATTCTGTTTCATTTTTGTCCTTATCATCAGCTCCTTCTCAATTGGACTGGCTCAACTTTACTGGTACTATGATCCGAATACGGATGTCTGCGTACCCGGTTCCACGTGTAGATCAAGTACAAATGTGTTTTCTTCGATTGCTGATTCTTATTTGACACTTCTTTGGTCCYTGTTCTCTATCACCAAACCAGAAGACACTGATGTCATTGAAAATCATAAAATCACGCAGTGGGTTGGTCAAGGAATGTTCATTATGTACCACTGCACTTCAATCATTGTACTTCTGAATATGTTAATTGCCATGATGTCTCATTCTTTCCAAATTATCAATGATCATGCCGATCTGGAGTGGAAATTCCATCGAACTAAACTCTGGATGGCTCATTTCGATGAAGGGTCCAGTCTTCCACCTCCATTCAACATCATTATCACACCGAAATCTCTTATCAATTTCGTGAATTGCCTTCTGAATACAGTAAGATGGCTGTTAGGGAAATACACGTATCAGAAGAATCGGAATCGAGCAACGATTCGGGTAAGTTTGGCATAAAAGACAATGAGATAGAGTAAGAAAGCATTTCAGCGCCCTGGCTACTCTCGAAAAAGGAATGAAATGGAAAAATCTGGAGGTCAAGATGATGATTCTGGAAAGGCACCGTTGACATATGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCATTTTTGTCCTTATCATCA</pcr_primer_p1>
		<pcr_primer_p2>TACATAATGAACATTCCTTGACC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCATTTTTGTCCTTATCATCAGCTCCTTCTCAATTGGACTGGCTCAACTTTACTGGTACTATGATCCGAATACGGATGTCTGCGTACCCGGTTCCACGTGTAGATCAAGTACAAATGTGTTTTCTTCGATTGCTGATTCTTATTTGACACTTCTTTGGTCCTTGTTCTCTATCACCAAACCAGAAGACACTGATGTCATTGAAAATCATAAAATCACGCAGTGGGTTGGTCAAGGAATGTTCATTATGTA</canonical_amplicon>
		<polymorphic_amplicon>TTCATTTTTGTCCTTATCATCAGCTCCTTCTCAATTGGACTGGCTCAACTTTACTGGTACTATGATCCGAATACGGATGTCTGCGTACCCGGTTCCACGTGTAGATCAAGTACAAATGTGTTTTCTTCGATTGCTGATTCTTATTTGACACTTCTTTGGTCCYTGTTCTCTATCACCAAACCAGAAGACACTGATGTCATTGAAAATCATAAAATCACGCAGTGGGTTGGTCAAGGAATGTTCATTATGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22112</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>603200</contig_pos>
        <strand>+</strand>
        <context>TTTATATCCC[A/C]CCGGTATTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATTGAAGCTTTGAAAAACAACCATAAAGCTCATATGACATTTATATCCC</left_flank>
        <right_flank>CCGGTATTTCTATCTGGCTCCAGAAGTTAGTCATTCTGATCATTAATTGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAATTGAATAGTTTCATTGAAAACTCGACGTAGAGAGCAAACAAAGTCTGGTTGACCTGGCAATTAGCTGATAATGAAAAAACTGCTCACACAGTGGCCTTGGACTAGGATTCATGCAACCCTCTTGGGCTAGAACTGAGAACGATTCCATTTAGGACTGCGTTTTTCAAACATTTCAGTTTTTTTTTCGGAATTTTTTCAAAGTAGTTTTATGAAAATACATAACTTCAAGAACATTTCAATGCAAAAAATTACACAAAATTTGTCTCTGAGTCCCTCTTCAGTTAGAGAAATTGCTTTGTAACATCTAGTGACATAAAAAATAGGGTACTTTCTAGAAACACAGATTTTGAGAAATATTTCGATAGAAAGGGTGGAAAAGGTACCGAAAGGGAATCTAAACTCCTTCGAGCACTTTTTGTGCTTTCTGATTTCAAAACATGTTTCATTGAAGCTTTGAAAAACAACCATAAAGCTCATATGACATTTATATCCCACCGGTATTTCTATCTGGCTCCAGAAGTTAGTCATTCTGATCATTAATTGGTTAATTAGTCAGAAAAGTCATGATCAACAACGATAACCACTGGATCATGAATAGGATTTTTGTGATTTGTGTAGATCTCCCAAGTCTAACTTGAAGATAAAAGTCGAGCTCATTTTCTCGAAACTTTGCCAAACCGAAAATAGAACTGGGAGGGTCATGTGACTTTCCCAACATGAAACAATTGTGATGGGAATCGGAACTCAACTGTTGCTCTTTTTCTCATCAAGAAAGTCGTCTCCAAATTCTCATTTTCCAATATCCATCTTATTCCGAAATGGGACTAAAAGACGTCGTTCTGTCTACTGAAACCTAGCAATCTAACTCCCCGTGTGGATAAGGGAAAATCTTTGGGGGAATGGGTAAACTTGAATTTTTTCATCAATTCCCTTCCTCCTATTTTCCTTTCTTTGCTTTTTCTGTTTTTGGTTTACTTTGCCTGTCGTTTTTCCC</canonical>
            <polymorphic>AAAAAATTGAATAGTTTCATTGAAAACTCGACGTAGAGAGCAAACAAAGTCTGGTTGACCTGGCAATTAGCTGATAATGAAAAAACTGCTCACACAGTGGCCTTGGACTAGGATTCATGCAACCCTCTTGGGCTAGAACTGAGAACGATTCCATTTAGGACTGCGTTTTTCAAACATTTCAGTTTTTTTTTCGGAATTTTTTCAAAGTAGTTTTATGAAAATACATAACTTCAAGAACATTTCAATGCAAAAAATTACACAAAATTTGTCTCTGAGTCCCTCTTCAGTTAGAGAAATTGCTTTGTAACATCTAGTGACATAAAAAATAGGGTACTTTCTAGAAACACAGATTTTGAGAAATATTTCGATAGAAAGGGTGGAAAAGGTACCGAAAGGGAATCTAAACTCCTTCGAGCACTTTTTGTGCTTTCTGATTTCAAAACATGTTTCATTGAAGCTTTGAAAAACAACCATAAAGCTCATATGACATTTATATCCCMCCGGTATTTCTATCTGGCTCCAGAAGTTAGTCATTCTGATCATTAATTGGTTAATTAGTCAGAAAAGTCATGATCAACAACGATAACCACTGGATCATGAATAGGATTTTTGTGATTTGTGTAGATCTCCCAAGTCTAACTTGAAGATAAAAGTCGAGCTCATTTTCTCGAAACTTTGCCAAACCGAAAATAGAACTGGGAGGGTCATGTGACTTTCCCAACATGAAACAATTGTGATGGGAATCGGAACTCAACTGTTGCTCTTTTTCTCATCAAGAAAGTCGTCTCCAAATTCTCATTTTCCAATATCCATCTTATTCCGAAATGGGACTAAAAGACGTCGTTCTGTCTACTGAAACCTAGCAATCTAACTCCCCGTGTGGATAAGGGAAAATCTTTGGGGGAATGGGTAAACTTGAATTTTTTCATCAATTCCCTTCCTCCTATTTTCCTTTCTTTGCTTTTTCTGTTTTTGGTTTACTTTGCCTGTCGTTTTTCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACCGGT</site>
                <isoschizomers>
                    <enzyme>AgeI</enzyme>
                    <enzyme>AsiAI</enzyme>
                    <enzyme>BshTI</enzyme>
                    <enzyme>CspAI</enzyme>
                    <enzyme>PinAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>160 144 118 92 90 89 74 57 38 33 30 25 25 9 7 5 2 2</canonical_bands>
                <polymorphic_bands>163 160 144 118 92 90 57 38 33 30 25 25 9 7 5 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTTTTGTGCTTTCTGATTTC</pcr_primer_p1>
		<pcr_primer_p2>AAAATGAGCTCGACTTTTATCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTTTTGTGCTTTCTGATTTCAAAACATGTTTCATTGAAGCTTTGAAAAACAACCATAAAGCTCATATGACATTTATATCCCACCGGTATTTCTATCTGGCTCCAGAAGTTAGTCATTCTGATCATTAATTGGTTAATTAGTCAGAAAAGTCATGATCAACAACGATAACCACTGGATCATGAATAGGATTTTTGTGATTTGTGTAGATCTCCCAAGTCTAACTTGAAGATAAAAGTCGAGCTCATTTT</canonical_amplicon>
		<polymorphic_amplicon>ACTTTTTGTGCTTTCTGATTTCAAAACATGTTTCATTGAAGCTTTGAAAAACAACCATAAAGCTCATATGACATTTATATCCCMCCGGTATTTCTATCTGGCTCCAGAAGTTAGTCATTCTGATCATTAATTGGTTAATTAGTCAGAAAAGTCATGATCAACAACGATAACCACTGGATCATGAATAGGATTTTTGTGATTTGTGTAGATCTCCCAAGTCTAACTTGAAGATAAAAGTCGAGCTCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22113</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>653249</contig_pos>
        <strand></strand>
        <context>TCTGGCatcg[A/G]aaaacctgta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTTTCGGTGCTTCATCGGTTCGATTTGATTAACGATTTTCTGGCATCG</left_flank>
        <right_flank>AAAACCTGTAACAGAAGGGCAATCTAACTTTTGACTTTAACTCAATTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAATCTCAGAATTCGGAATCTGAGAATTTCGGAACTTCAGAGTCTGAGAATCTGAAAATTTCGGAACTTCAGAATCTGAGAATCTGAGAAATTCCGAATTTCAGAACTTCGAAATCTCCCTTGTACCCCCGAATCATTTTACCCCCCGAATTTTTGGCCACTAAAAAGGCATTTCGCTTTTTACAGTGCTGAAAAATTTATGAACTATCTGGAAAAAGAAAAAAAAGCAAGGAAAAGAGATATTTCGCAATCGAGAGTTTTGGAAGTGAGTATTTCCGTATCCGAAAATTCGTGATCCTAAAAAAAAACTATTTATTTGCCCATACAATTATGGATTTTAAGATTTCTAATTACAAATTCAAGAAATTGTCAAGCTTTAAAATTCTAGATTCAGGATATTTTACAGATGTTATTACTAGGAACGATAAAATTAAGACTTTTTCTTCAGTTTTTCGGTGCTTCATCGGTTCGATTTGATTAACGATTTTCTGGCATCGAAAAACCTGTAACAGAAGGGCAATCTAACTTTTGACTTTAACTCAATTTTTCTCATTTCCTGTGAATGATATCAAAAAGTTTTCAACCGATAAAATGTTGGTCATAATATCAAAAACATTTTATAAGTTGGCACATTTTTCATATCTTCCACTTCCACAGGATCTGAGGTAATTGAGCTTAAACTTGGCCGGGGGCTCCTATTACAAGTTTTAAGGAGTGTGCATATTTCTGTACTTTTCCAATTTCCTCTGAAAATGTTGTTGTTAATCAATTTTATAAAAACGGCCGACCGAAAGCTTTTTATCTTTTTCCACACTCTTCGTTTCCCCATCATGTTTTCTGTTGGTGTCACTCTTTTTTTCGAACAGTCTACCTTTTTTCATTCAGCGAATGCCACCTGAATAAAAACCACTTTTCAACATTTATTGACTCAAAACTTCCGAACAACGATCAGAATTTTTTTCCAGGTATTCGTTGTCATTCTCATGAGTTTTCATTGT</canonical>
            <polymorphic>GAAAATCTCAGAATTCGGAATCTGAGAATTTCGGAACTTCAGAGTCTGAGAATCTGAAAATTTCGGAACTTCAGAATCTGAGAATCTGAGAAATTCCGAATTTCAGAACTTCGAAATCTCCCTTGTACCCCCGAATCATTTTACCCCCCGAATTTTTGGCCACTAAAAAGGCATTTCGCTTTTTACAGTGCTGAAAAATTTATGAACTATCTGGAAAAAGAAAAAAAAGCAAGGAAAAGAGATATTTCGCAATCGAGAGTTTTGGAAGTGAGTATTTCCGTATCCGAAAATTCGTGATCCTAAAAAAAAACTATTTATTTGCCCATACAATTATGGATTTTAAGATTTCTAATTACAAATTCAAGAAATTGTCAAGCTTTAAAATTCTAGATTCAGGATATTTTACAGATGTTATTACTAGGAACGATAAAATTAAGACTTTTTCTTCAGTTTTTCGGTGCTTCATCGGTTCGATTTGATTAACGATTTTCTGGCATCGRAAAACCTGTAACAGAAGGGCAATCTAACTTTTGACTTTAACTCAATTTTTCTCATTTCCTGTGAATGATATCAAAAAGTTTTCAACCGATAAAATGTTGGTCATAATATCAAAAACATTTTATAAGTTGGCACATTTTTCATATCTTCCACTTCCACAGGATCTGAGGTAATTGAGCTTAAACTTGGCCGGGGGCTCCTATTACAAGTTTTAAGGAGTGTGCATATTTCTGTACTTTTCCAATTTCCTCTGAAAATGTTGTTGTTAATCAATTTTATAAAAACGGCCGACCGAAAGCTTTTTATCTTTTTCCACACTCTTCGTTTCCCCATCATGTTTTCTGTTGGTGTCACTCTTTTTTTCGAACAGTCTACCTTTTTTCATTCAGCGAATGCCACCTGAATAAAAACCACTTTTCAACATTTATTGACTCAAAACTTCCGAACAACGATCAGAATTTTTTTCCAGGTATTCGTTGTCATTCTCATGAGTTTTCATTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>364 218 142 138 112 26</canonical_bands>
                <polymorphic_bands>390 218 142 138 112</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATAAAATTAAGACTTTTTCTTCA</pcr_primer_p1>
		<pcr_primer_p2>ATTGGAAAAGTACAGAAATATGC</pcr_primer_p2>
		<pcr_amplicon_size>319</pcr_amplicon_size>
		<canonical_amplicon>CGATAAAATTAAGACTTTTTCTTCAGTTTTTCGGTGCTTCATCGGTTCGATTTGATTAACGATTTTCTGGCATCGAAAAACCTGTAACAGAAGGGCAATCTAACTTTTGACTTTAACTCAATTTTTCTCATTTCCTGTGAATGATATCAAAAAGTTTTCAACCGATAAAATGTTGGTCATAATATCAAAAACATTTTATAAGTTGGCACATTTTTCATATCTTCCACTTCCACAGGATCTGAGGTAATTGAGCTTAAACTTGGCCGGGGGCTCCTATTACAAGTTTTAAGGAGTGTGCATATTTCTGTACTTTTCCAAT</canonical_amplicon>
		<polymorphic_amplicon>CGATAAAATTAAGACTTTTTCTTCAGTTTTTCGGTGCTTCATCGGTTCGATTTGATTAACGATTTTCTGGCATCGRAAAACCTGTAACAGAAGGGCAATCTAACTTTTGACTTTAACTCAATTTTTCTCATTTCCTGTGAATGATATCAAAAAGTTTTCAACCGATAAAATGTTGGTCATAATATCAAAAACATTTTATAAGTTGGCACATTTTTCATATCTTCCACTTCCACAGGATCTGAGGTAATTGAGCTTAAACTTGGCCGGGGGCTCCTATTACAAGTTTTAAGGAGTGTGCATATTTCTGTACTTTTCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22114</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>675343</contig_pos>
        <strand>+</strand>
        <context>CGATTCTGAA[A/G]GTTATCTTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTCACGACCCGATGTGGTGGTATCATGTGAAATCGAAGACGATTCTGAA</left_flank>
        <right_flank>GTTATCTTGTTGACAAAGGGGGTGGATATCAATAGAAAACTCACGTTCAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCTTCTACACAGTACCGCCCATCTATCTTCCCAGTGATTTCGTTTTCCTGACTTTCCAAGTGCAATCTCTTGATGTTTGACCCATGTTTGGCGAGCAACACCATCCCGTTGCAGAATAGTACCAGGAAGAGCAAATCGACTGGCGGGTAATGATGTTCGAGATCTCTTCATCCGTGACTTTTTTGGCTCACCAGATCCATCTGATGCTTTCTGAAAATTGCAACTTTTTGTATTCAACTGTAAATCTAAATATATTTTTTGCACTTACACTAGAATTGAAAAGTGCAATGAATCTTTGGAGACGATGAGTCGCCGGTGGATGTGGTGCATTCAAACTTCGAGAAGTGTTCTGTCCAGAGTTCGAAGTTGTGGTAGTTGCTGAAGACGTCGTCGCTCTTCCACTTCTCAACTCCATTGAAGTCATGGATCCCATCAGTGAAGACGGTAACTCACGACCCGATGTGGTGGTATCATGTGAAATCGAAGACGATTCTGAAAGTTATCTTGTTGACAAAGGGGGTGGATATCAATAGAAAACTCACGTTCATTGGCAATCATTGACGATTGAATCACGTCGTCATTCATAGATGCCGATGTAGCCAGTACGTATGATTTGGGTCTGGCGCGGCGTATCATCTTCATTGCTTCTGAAAACCGTGTTTGATTAGAAGTTTTGATTGTATTAGCATGGATAATATGTTCATGCGTGTTTGATTAGAATAGATAGTAACATTAAAAAGATGGAATGACAGTTCGATTGCATAGGAATATCAGTCTCGCTGGATTTATCAGCATAATTTCAAAACTATGATCAAGAACAGAACACAAAGCTTACAAGAATATCAAGAATATTCATGAAATAGTGTCTAGGCAATCTGATGAGAGGAGAAATGTTAATTTATGCAAATTCATTCTATTAACTAAGGCTAAGGATTTCTTCTCCTTTTCTGGAGAAGTGACTCGTGTCTTAGAAAGATGAGTCCTGGTTGATAGATATG</canonical>
            <polymorphic>CTTCTTCTACACAGTACCGCCCATCTATCTTCCCAGTGATTTCGTTTTCCTGACTTTCCAAGTGCAATCTCTTGATGTTTGACCCATGTTTGGCGAGCAACACCATCCCGTTGCAGAATAGTACCAGGAAGAGCAAATCGACTGGCGGGTAATGATGTTCGAGATCTCTTCATCCGTGACTTTTTTGGCTCACCAGATCCATCTGATGCTTTCTGAAAATTGCAACTTTTTGTATTCAACTGTAAATCTAAATATATTTTTTGCACTTACACTAGAATTGAAAAGTGCAATGAATCTTTGGAGACGATGAGTCGCCGGTGGATGTGGTGCATTCAAACTTCGAGAAGTGTTCTGTCCAGAGTTCGAAGTTGTGGTAGTTGCTGAAGACGTCGTCGCTCTTCCACTTCTCAACTCCATTGAAGTCATGGATCCCATCAGTGAAGACGGTAACTCACGACCCGATGTGGTGGTATCATGTGAAATCGAAGACGATTCTGAARGTTATCTTGTTGACAAAGGGGGTGGATATCAATAGAAAACTCACGTTCATTGGCAATCATTGACGATTGAATCACGTCGTCATTCATAGATGCCGATGTAGCCAGTACGTATGATTTGGGTCTGGCGCGGCGTATCATCTTCATTGCTTCTGAAAACCGTGTTTGATTAGAAGTTTTGATTGTATTAGCATGGATAATATGTTCATGCGTGTTTGATTAGAATAGATAGTAACATTAAAAAGATGGAATGACAGTTCGATTGCATAGGAATATCAGTCTCGCTGGATTTATCAGCATAATTTCAAAACTATGATCAAGAACAGAACACAAAGCTTACAAGAATATCAAGAATATTCATGAAATAGTGTCTAGGCAATCTGATGAGAGGAGAAATGTTAATTTATGCAAATTCATTCTATTAACTAAGGCTAAGGATTTCTTCTCCTTTTCTGGAGAAGTGACTCGTGTCTTAGAAAGATGAGTCCTGGTTGATAGATATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTGTGGTAGTTGCTGAAGAC</pcr_primer_p1>
		<pcr_primer_p2>AAATCATACGTACTGGCTACATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGTTGTGGTAGTTGCTGAAGACGTCGTCGCTCTTCCACTTCTCAACTCCATTGAAGTCATGGATCCCATCAGTGAAGACGGTAACTCACGACCCGATGTGGTGGTATCATGTGAAATCGAAGACGATTCTGAAAGTTATCTTGTTGACAAAGGGGGTGGATATCAATAGAAAACTCACGTTCATTGGCAATCATTGACGATTGAATCACGTCGTCATTCATAGATGCCGATGTAGCCAGTACGTATGATTT</canonical_amplicon>
		<polymorphic_amplicon>AGTTGTGGTAGTTGCTGAAGACGTCGTCGCTCTTCCACTTCTCAACTCCATTGAAGTCATGGATCCCATCAGTGAAGACGGTAACTCACGACCCGATGTGGTGGTATCATGTGAAATCGAAGACGATTCTGAARGTTATCTTGTTGACAAAGGGGGTGGATATCAATAGAAAACTCACGTTCATTGGCAATCATTGACGATTGAATCACGTCGTCATTCATAGATGCCGATGTAGCCAGTACGTATGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22115</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>678080</contig_pos>
        <strand>+</strand>
        <context>CTTATGATAC[C/T]GTTGGATAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTATTGATAACAATTCGATCAACGATCTTCTTTCTCTCCTTATGATAC</left_flank>
        <right_flank>GTTGGATAGATGCTTTGCAAAGTGTGTATTATGACTAGAAGAGAGACTGA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTACACGCGTTACCAGGAGACGTCGCCGATTTCAACGAATCGAGAAGAACTATTGAATGGCTGAGAAAAAAACAAACGAACACACAAATTTCTATAAAACGAAACGGAATGTCCTCCTCCTCTTGTTGGCGCATCTTATTCTACTTCCTCTCGACAAGTGTTTCTCGAGAATCATGATCGTCGTCGTCGTCGGAAGAGAAACAAGAGAGACCATGGTCTTCTTCTACCTCTCCGTAGCAATTAACCTTTGCCTCTCTGTATGTGACTAATCACCTTCTTTTCGGTGTTTTACCCGAGGACACTGTGTTGAATTTCTTTGCGGGAAGCCGTCGCGCTGAAGCACTTTTTTCTGTTCGAAATAGGACAACCTTTGTCTATTCAGCTAGTGCCGAAGAAGGTGTCAAAATGATTTGCAGCGACGGAGAAAAACTCCGACGGCGACTGTTAAAATTATTGATAACAATTCGATCAACGATCTTCTTTCTCTCCTTATGATACCGTTGGATAGATGCTTTGCAAAGTGTGTATTATGACTAGAAGAGAGACTGACTTGACACCAAAAAAAGATGAGAAGAAGTGTCATAAACGACGACATCGAATAGGAATGGGTCGATGACCACAAGAGAGACACACCGAATCCACTTTCATGCCTACCCCACGAGTCCTCATCATCATCATCGTCTACCCCCTCATATTTTTCAATCATCATTAGCAAAAAGAGCAAACAAGCTAGAAGGGTGATCCTTTGAGTGGGAGGACTTGCGGATGAGTAAAATTAGCATCGTTCCTCAAAAATAGAGCAGCAAAAAGGAAACGGATGGAAGAGGCGGTGAACGGAAGTGAATTGAAAGGCGTATTTCTGGAATCAGAAATGACAGCGATTCGCTTTTTTTCAGTTTGTAGGGGATCTTTTCTGAAAATCTAAAGCAGTGACGGCTAACGGGAAGTAAGACAACCGGTGCCGGTTAACGATCAGTACTAGATACTTATACAATACTT</canonical>
            <polymorphic>ACTACACGCGTTACCAGGAGACGTCGCCGATTTCAACGAATCGAGAAGAACTATTGAATGGCTGAGAAAAAAACAAACGAACACACAAATTTCTATAAAACGAAACGGAATGTCCTCCTCCTCTTGTTGGCGCATCTTATTCTACTTCCTCTCGACAAGTGTTTCTCGAGAATCATGATCGTCGTCGTCGTCGGAAGAGAAACAAGAGAGACCATGGTCTTCTTCTACCTCTCCGTAGCAATTAACCTTTGCCTCTCTGTATGTGACTAATCACCTTCTTTTCGGTGTTTTACCCGAGGACACTGTGTTGAATTTCTTTGCGGGAAGCCGTCGCGCTGAAGCACTTTTTTCTGTTCGAAATAGGACAACCTTTGTCTATTCAGCTAGTGCCGAAGAAGGTGTCAAAATGATTTGCAGCGACGGAGAAAAACTCCGACGGCGACTGTTAAAATTATTGATAACAATTCGATCAACGATCTTCTTTCTCTCCTTATGATACYGTTGGATAGATGCTTTGCAAAGTGTGTATTATGACTAGAAGAGAGACTGACTTGACACCAAAAAAAGATGAGAAGAAGTGTCATAAACGACGACATCGAATAGGAATGGGTCGATGACCACAAGAGAGACACACCGAATCCACTTTCATGCCTACCCCACGAGTCCTCATCATCATCATCGTCTACCCCCTCATATTTTTCAATCATCATTAGCAAAAAGAGCAAACAAGCTAGAAGGGTGATCCTTTGAGTGGGAGGACTTGCGGATGAGTAAAATTAGCATCGTTCCTCAAAAATAGAGCAGCAAAAAGGAAACGGATGGAAGAGGCGGTGAACGGAAGTGAATTGAAAGGCGTATTTCTGGAATCAGAAATGACAGCGATTCGCTTTTTTTCAGTTTGTAGGGGATCTTTTCTGAAAATCTAAAGCAGTGACGGCTAACGGGAAGTAAGACAACCGGTGCCGGTTAACGATCAGTACTAGATACTTATACAATACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTGTTCGAAATAGGACAAC</pcr_primer_p1>
		<pcr_primer_p2>TCGTTTATGACACTTCTTCTCAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTCTGTTCGAAATAGGACAACCTTTGTCTATTCAGCTAGTGCCGAAGAAGGTGTCAAAATGATTTGCAGCGACGGAGAAAAACTCCGACGGCGACTGTTAAAATTATTGATAACAATTCGATCAACGATCTTCTTTCTCTCCTTATGATACCGTTGGATAGATGCTTTGCAAAGTGTGTATTATGACTAGAAGAGAGACTGACTTGACACCAAAAAAAGATGAGAAGAAGTGTCATAAACGA</canonical_amplicon>
		<polymorphic_amplicon>TTTCTGTTCGAAATAGGACAACCTTTGTCTATTCAGCTAGTGCCGAAGAAGGTGTCAAAATGATTTGCAGCGACGGAGAAAAACTCCGACGGCGACTGTTAAAATTATTGATAACAATTCGATCAACGATCTTCTTTCTCTCCTTATGATACYGTTGGATAGATGCTTTGCAAAGTGTGTATTATGACTAGAAGAGAGACTGACTTGACACCAAAAAAAGATGAGAAGAAGTGTCATAAACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22117</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>788152</contig_pos>
        <strand>+</strand>
        <context>AGGGGCTGAT[A/G]TGATTGCTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTATGTACGGAAATTCAATGAGATTGCAGATGGTTTTTCTAGGGGCTGAT</left_flank>
        <right_flank>TGATTGCTACCGTACCTCACTTACTGTAACCTACAGTACCGGAAAAACAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGAGGATAAGAATCCAGGAATGGTGCTTCGAAGTAGTATAACACAAGAATATAAGCTCGGGAGTCATTTCCAGATATGGGATTTTTTTTGAATTCCTAAATTTTCAGTATATCGGAATTAGGACGCATTAAATGTAGGAAAGAGGGAAATCAAAATTTCTCACGATAGTCGTGTGAAAAGAGTTGTTTCTTATACATAGTTATTGTTTTTTCCCTAGACAGTATGAGTGTCTAGGGTCCATCACGCGCGGTGACAATATGTAGTTACCGTAAACATATAATGATCCAAATTTTGAGCCAATCTCGGTTTCTGTAAAAGATATCAACAAGTGAAAAAATATTTTGATATTATGATAAGCATTCTGTCAGTTGACGACTTTTAGATATATTTCATAGGAACCGAGATATGCGGGGTTAAAGTTGAAAGTTTGGAGTGGAGGGGTTAAAGTATGTACGGAAATTCAATGAGATTGCAGATGGTTTTTCTAGGGGCTGATATGATTGCTACCGTACCTCACTTACTGTAACCTACAGTACCGGAAAAACACTCCTATTATAAACACTCAACTTTGAGAATACCTTATTTAGAATTTTTATAAAATCTTTCAGACCATTGAACTCTTCTAGTTTGCTCACTTGGAGCATTAACTCTGATTTTTTAAACATTTTATGTATTGCACTAACTTTCAAATAAACAGTTGCCACTCTTCTTTTTTATACTTCCTGATGAGCATAACCAAACCTAACTTTCCGTTATACTTCCCTGTAGTTCTCGAAAGAGTTGCAGTTTTCCCTCATTTCTTCTCACTTCTTTCTCTTTCTACACTCTTTCCACTTCTTTCGTTCTCATTCACTCGTTCATAAATACATTGCGAGAAAAAAGGAGTGGAATAAAATGAATGGGTGTGTTGGTGCCCTCGAAGGCCTGTCATCATCTCGTGAGATGGATTTGGGGGAGGATAAGAAGAAAAGGAAGGGAAAAGGGCGGGAGTTACGGT</canonical>
            <polymorphic>AAAAGAGGATAAGAATCCAGGAATGGTGCTTCGAAGTAGTATAACACAAGAATATAAGCTCGGGAGTCATTTCCAGATATGGGATTTTTTTTGAATTCCTAAATTTTCAGTATATCGGAATTAGGACGCATTAAATGTAGGAAAGAGGGAAATCAAAATTTCTCACGATAGTCGTGTGAAAAGAGTTGTTTCTTATACATAGTTATTGTTTTTTCCCTAGACAGTATGAGTGTCTAGGGTCCATCACGCGCGGTGACAATATGTAGTTACCGTAAACATATAATGATCCAAATTTTGAGCCAATCTCGGTTTCTGTAAAAGATATCAACAAGTGAAAAAATATTTTGATATTATGATAAGCATTCTGTCAGTTGACGACTTTTAGATATATTTCATAGGAACCGAGATATGCGGGGTTAAAGTTGAAAGTTTGGAGTGGAGGGGTTAAAGTATGTACGGAAATTCAATGAGATTGCAGATGGTTTTTCTAGGGGCTGATRTGATTGCTACCGTACCTCACTTACTGTAACCTACAGTACCGGAAAAACACTCCTATTATAAACACTCAACTTTGAGAATACCTTATTTAGAATTTTTATAAAATCTTTCAGACCATTGAACTCTTCTAGTTTGCTCACTTGGAGCATTAACTCTGATTTTTTAAACATTTTATGTATTGCACTAACTTTCAAATAAACAGTTGCCACTCTTCTTTTTTATACTTCCTGATGAGCATAACCAAACCTAACTTTCCGTTATACTTCCCTGTAGTTCTCGAAAGAGTTGCAGTTTTCCCTCATTTCTTCTCACTTCTTTCTCTTTCTACACTCTTTCCACTTCTTTCGTTCTCATTCACTCGTTCATAAATACATTGCGAGAAAAAAGGAGTGGAATAAAATGAATGGGTGTGTTGGTGCCCTCGAAGGCCTGTCATCATCTCGTGAGATGGATTTGGGGGAGGATAAGAAGAAAAGGAAGGGAAAAGGGCGGGAGTTACGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGTATGTACGGAAATTCAATG</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAAGTTAGTGCAATACATAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAGTATGTACGGAAATTCAATGAGATTGCAGATGGTTTTTCTAGGGGCTGATATGATTGCTACCGTACCTCACTTACTGTAACCTACAGTACCGGAAAAACACTCCTATTATAAACACTCAACTTTGAGAATACCTTATTTAGAATTTTTATAAAATCTTTCAGACCATTGAACTCTTCTAGTTTGCTCACTTGGAGCATTAACTCTGATTTTTTAAACATTTTATGTATTGCACTAACTTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAGTATGTACGGAAATTCAATGAGATTGCAGATGGTTTTTCTAGGGGCTGATRTGATTGCTACCGTACCTCACTTACTGTAACCTACAGTACCGGAAAAACACTCCTATTATAAACACTCAACTTTGAGAATACCTTATTTAGAATTTTTATAAAATCTTTCAGACCATTGAACTCTTCTAGTTTGCTCACTTGGAGCATTAACTCTGATTTTTTAAACATTTTATGTATTGCACTAACTTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22118</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>826470</contig_pos>
        <strand>+</strand>
        <context>TACAGTCAAC[A/G]CTTTCTGTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAACAGAAGTTGATTTTTCTTCTTTTTCTCAATTTCAGCTACAGTCAAC</left_flank>
        <right_flank>CTTTCTGTTTGACTTGATTCTCTTTGTTCGCATTCGTTCTTATTGAGGGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCGGATTCGGATCAGAATCGACAGAGTTGACGAGAGGAATAGGGATCCCTTCCAGTCCCACAGAAATATCACTCATTCTGACATACTTTTGGTCCACAGTAATGTATGTTTCCGTGTCAACGTCTGGTGCAAAAGAGAAACAGTCGATGGTCAATTGACTTCTGGTGCTGCGCAAATAGTCGGCGATTTCAGATGTCTTTTCGAGTGGTTTTCCACATGGAGCACGATAGATGATCACTTTTTTGACACTCGCACGTTTCTTTCCACTGTGCATCGTGTATTTCAGACGTTTCCAGCCACAAAGAAGCGGAGTGTGAAGAGGAGAATTAGTGTGGAAACGTGCATCGTATGGGTTGGCGTCCAATTTTTGAAGACAGTCCGGTCCGCATTGCGAATGAGGAGCACGCTTTTCTTTTGAGATATTCGGTGTGGGCACGACGGTTTTGTGAAACAGAAGTTGATTTTTCTTCTTTTTCTCAATTTCAGCTACAGTCAACGCTTTCTGTTTGACTTGATTCTCTTTGTTCGCATTCGTTCTTATTGAGGGAACACTTGTTTGCAATGCTTGGTTCGTTGATCTTTGTGGCATCGTTTTGACGGACTCAGATAATTCGAACTGCGAAGCCAGTTGATCCTTCTTACGTTTCGAAAGATTGTTGTTGACTTGTGTCATCATTTCGCGCATTGACTGTAAAAATATAGTTATAGTGGATTAAAGGTAAAGAAGGTTAAAGCATAAAAGAACCTACCGAGACTTGTGTGATTCTCGAAGAACCTCTGTAGACGTGCTCATCCATATGATAATGGGTCGAATCTTTACATGGATATTCGAAGCAGTTGTATCCGGGGGCACCACTGGGGGTCTGATATCGGACAATTGCGAACACTCTATCCAGTCCGACAACAGTAATAAGATGTTTTTCTTTATTGTCTGGCGGAAGCTTGGTCATCGTCGTTCGGAATCCGATAGGCATTTTGAGAACTTGGAATTCCGGGAA</canonical>
            <polymorphic>AACCGGATTCGGATCAGAATCGACAGAGTTGACGAGAGGAATAGGGATCCCTTCCAGTCCCACAGAAATATCACTCATTCTGACATACTTTTGGTCCACAGTAATGTATGTTTCCGTGTCAACGTCTGGTGCAAAAGAGAAACAGTCGATGGTCAATTGACTTCTGGTGCTGCGCAAATAGTCGGCGATTTCAGATGTCTTTTCGAGTGGTTTTCCACATGGAGCACGATAGATGATCACTTTTTTGACACTCGCACGTTTCTTTCCACTGTGCATCGTGTATTTCAGACGTTTCCAGCCACAAAGAAGCGGAGTGTGAAGAGGAGAATTAGTGTGGAAACGTGCATCGTATGGGTTGGCGTCCAATTTTTGAAGACAGTCCGGTCCGCATTGCGAATGAGGAGCACGCTTTTCTTTTGAGATATTCGGTGTGGGCACGACGGTTTTGTGAAACAGAAGTTGATTTTTCTTCTTTTTCTCAATTTCAGCTACAGTCAACRCTTTCTGTTTGACTTGATTCTCTTTGTTCGCATTCGTTCTTATTGAGGGAACACTTGTTTGCAATGCTTGGTTCGTTGATCTTTGTGGCATCGTTTTGACGGACTCAGATAATTCGAACTGCGAAGCCAGTTGATCCTTCTTACGTTTCGAAAGATTGTTGTTGACTTGTGTCATCATTTCGCGCATTGACTGTAAAAATATAGTTATAGTGGATTAAAGGTAAAGAAGGTTAAAGCATAAAAGAACCTACCGAGACTTGTGTGATTCTCGAAGAACCTCTGTAGACGTGCTCATCCATATGATAATGGGTCGAATCTTTACATGGATATTCGAAGCAGTTGTATCCGGGGGCACCACTGGGGGTCTGATATCGGACAATTGCGAACACTCTATCCAGTCCGACAACAGTAATAAGATGTTTTTCTTTATTGTCTGGCGGAAGCTTGGTCATCGTCGTTCGGAATCCGATAGGCATTTTGAGAACTTGGAATTCCGGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGTGTGAAGAGGAGAATTAGT</pcr_primer_p1>
		<pcr_primer_p2>AAACAAGTGTTCCCTCAATAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAGTGTGAAGAGGAGAATTAGTGTGGAAACGTGCATCGTATGGGTTGGCGTCCAATTTTTGAAGACAGTCCGGTCCGCATTGCGAATGAGGAGCACGCTTTTCTTTTGAGATATTCGGTGTGGGCACGACGGTTTTGTGAAACAGAAGTTGATTTTTCTTCTTTTTCTCAATTTCAGCTACAGTCAACGCTTTCTGTTTGACTTGATTCTCTTTGTTCGCATTCGTTCTTATTGAGGGAACACTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>GGAGTGTGAAGAGGAGAATTAGTGTGGAAACGTGCATCGTATGGGTTGGCGTCCAATTTTTGAAGACAGTCCGGTCCGCATTGCGAATGAGGAGCACGCTTTTCTTTTGAGATATTCGGTGTGGGCACGACGGTTTTGTGAAACAGAAGTTGATTTTTCTTCTTTTTCTCAATTTCAGCTACAGTCAACRCTTTCTGTTTGACTTGATTCTCTTTGTTCGCATTCGTTCTTATTGAGGGAACACTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22119</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>826196</contig_pos>
        <strand>+</strand>
        <context>CACATGGAGC[A/T]CGATAGATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATAGTCGGCGATTTCAGATGTCTTTTCGAGTGGTTTTCCACATGGAGC</left_flank>
        <right_flank>CGATAGATGATCACTTTTTTGACACTCGCACGTTTCTTTCCACTGTGCAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTGTTAGTGAGAACTCGTTGAGAATAGGTAGATGCTCTGAAAGGAAATATTGGAGACTGAATTATAGTTTGGAATTCTTACAATCTCTTGTTATCCTCGAATTTCAAATGTTTCGGAAGTTTATCTGATGCTTCTGCTGATAATTTCTGACATTCACAGGTCAAACTGTTACTACAATCTCCATCGCACGAGCACCCAGAACAAAAATCTTGTGAAATACTAGAAACATCCACACTGGCGTTGTAGGGGAATCGCCGTTTACAGTACTCGAGAACCGGATTCGGATCAGAATCGACAGAGTTGACGAGAGGAATAGGGATCCCTTCCAGTCCCACAGAAATATCACTCATTCTGACATACTTTTGGTCCACAGTAATGTATGTTTCCGTGTCAACGTCTGGTGCAAAAGAGAAACAGTCGATGGTCAATTGACTTCTGGTGCTGCGCAAATAGTCGGCGATTTCAGATGTCTTTTCGAGTGGTTTTCCACATGGAGCACGATAGATGATCACTTTTTTGACACTCGCACGTTTCTTTCCACTGTGCATCGTGTATTTCAGACGTTTCCAGCCACAAAGAAGCGGAGTGTGAAGAGGAGAATTAGTGTGGAAACGTGCATCGTATGGGTTGGCGTCCAATTTTTGAAGACAGTCCGGTCCGCATTGCGAATGAGGAGCACGCTTTTCTTTTGAGATATTCGGTGTGGGCACGACGGTTTTGTGAAACAGAAGTTGATTTTTCTTCTTTTTCTCAATTTCAGCTACAGTCAACGCTTTCTGTTTGACTTGATTCTCTTTGTTCGCATTCGTTCTTATTGAGGGAACACTTGTTTGCAATGCTTGGTTCGTTGATCTTTGTGGCATCGTTTTGACGGACTCAGATAATTCGAACTGCGAAGCCAGTTGATCCTTCTTACGTTTCGAAAGATTGTTGTTGACTTGTGTCATCATTTCGCGCATTGACTGTAAAAATATAGTTATAGTGGATTAAAGGTAAAG</canonical>
            <polymorphic>CCTTGTTAGTGAGAACTCGTTGAGAATAGGTAGATGCTCTGAAAGGAAATATTGGAGACTGAATTATAGTTTGGAATTCTTACAATCTCTTGTTATCCTCGAATTTCAAATGTTTCGGAAGTTTATCTGATGCTTCTGCTGATAATTTCTGACATTCACAGGTCAAACTGTTACTACAATCTCCATCGCACGAGCACCCAGAACAAAAATCTTGTGAAATACTAGAAACATCCACACTGGCGTTGTAGGGGAATCGCCGTTTACAGTACTCGAGAACCGGATTCGGATCAGAATCGACAGAGTTGACGAGAGGAATAGGGATCCCTTCCAGTCCCACAGAAATATCACTCATTCTGACATACTTTTGGTCCACAGTAATGTATGTTTCCGTGTCAACGTCTGGTGCAAAAGAGAAACAGTCGATGGTCAATTGACTTCTGGTGCTGCGCAAATAGTCGGCGATTTCAGATGTCTTTTCGAGTGGTTTTCCACATGGAGCWCGATAGATGATCACTTTTTTGACACTCGCACGTTTCTTTCCACTGTGCATCGTGTATTTCAGACGTTTCCAGCCACAAAGAAGCGGAGTGTGAAGAGGAGAATTAGTGTGGAAACGTGCATCGTATGGGTTGGCGTCCAATTTTTGAAGACAGTCCGGTCCGCATTGCGAATGAGGAGCACGCTTTTCTTTTGAGATATTCGGTGTGGGCACGACGGTTTTGTGAAACAGAAGTTGATTTTTCTTCTTTTTCTCAATTTCAGCTACAGTCAACGCTTTCTGTTTGACTTGATTCTCTTTGTTCGCATTCGTTCTTATTGAGGGAACACTTGTTTGCAATGCTTGGTTCGTTGATCTTTGTGGCATCGTTTTGACGGACTCAGATAATTCGAACTGCGAAGCCAGTTGATCCTTCTTACGTTTCGAAAGATTGTTGTTGACTTGTGTCATCATTTCGCGCATTGACTGTAAAAATATAGTTATAGTGGATTAAAGGTAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>320 304 196 180</canonical_bands>
                <polymorphic_bands>484 320 196</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>304 289 196 180 31</canonical_bands>
                <polymorphic_bands>484 289 196 31</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>147 103 100 84 62 41 40 38 34 32 25 25 21 20 20 18 16 15 14 13 13 13 12 11 11 11 9 8 8 7 6 6 5 4 2 2 2 2</canonical_bands>
                <polymorphic_bands>147 103 100 84 62 41 40 38 34 32 25 25 22 21 20 20 18 16 15 14 13 13 12 11 11 11 8 8 7 6 6 5 4 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTTTGGTCCACAGTAATGTAT</pcr_primer_p1>
		<pcr_primer_p2>CACACTAATTCTCCTCTTCACAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTTTGGTCCACAGTAATGTATGTTTCCGTGTCAACGTCTGGTGCAAAAGAGAAACAGTCGATGGTCAATTGACTTCTGGTGCTGCGCAAATAGTCGGCGATTTCAGATGTCTTTTCGAGTGGTTTTCCACATGGAGCACGATAGATGATCACTTTTTTGACACTCGCACGTTTCTTTCCACTGTGCATCGTGTATTTCAGACGTTTCCAGCCACAAAGAAGCGGAGTGTGAAGAGGAGAATTAGTGTG</canonical_amplicon>
		<polymorphic_amplicon>ACTTTTGGTCCACAGTAATGTATGTTTCCGTGTCAACGTCTGGTGCAAAAGAGAAACAGTCGATGGTCAATTGACTTCTGGTGCTGCGCAAATAGTCGGCGATTTCAGATGTCTTTTCGAGTGGTTTTCCACATGGAGCWCGATAGATGATCACTTTTTTGACACTCGCACGTTTCTTTCCACTGTGCATCGTGTATTTCAGACGTTTCCAGCCACAAAGAAGCGGAGTGTGAAGAGGAGAATTAGTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22120</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>842938</contig_pos>
        <strand>+</strand>
        <context>CAAAACTATC[G/T]GTTGGCTCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATATTGTTGCAGATGTCGTCGCTGGAAAGTCTCCTTTCTCAAAACTATC</left_flank>
        <right_flank>GTTGGCTCGTCTTTCACAGTCATCGGCTTTTTCGAAGTGTCGGTCTCCGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGCATAGTTGATATCACCACCGGCTTGCATGTAACCATTGAGGAATTGACGGAAGGCAGCTAAAAAAATTTTTGGTTGAAAAAAAAATAGAACCCCACGTTTTTTTTTACTTTTGGCTTCGAAAATTGACCTGATGCGAATTCTTCGCGTACATTTGCAAAAAAAATTAAAAAATGCGAAAACTTGACACAAAAAAAATTCGTTTGATAATATTCACAAGCTTTCAAAAAAAAATCGGGGATTTGCGAAAAAAAACTAAAATTCGCTATCATCGCTATTATCGATCGCTATACTATCATCGCTATAAAATTCGCTATTATCGATGCAACCAGTTTACGAACCAAAAAGAGTCAGATAACTGATTGGTGGATTCGACGACATACTAGCATTCTTCGGCGGAGGCGGAACCGGTGGTGTCGCTATGATCGAATCGAGAATCGGAGTCGCAGATATTGTTGCAGATGTCGTCGCTGGAAAGTCTCCTTTCTCAAAACTATCTGTTGGCTCGTCTTTCACAGTCATCGGCTTTTTCGAAGTGTCGGTCTCCGGGTCGTCATCCTCCAGCTGTCGTTTTCTTTGATTCGAGCTATCCATACTGCAAGCATAGGATTTTCAAACACCTTTCTCTTTCAGCTAACCTCTATTGAACAGATGAGCGCTTGATTCCACAGGTATTCCACGAAAGTAGATTTTCAGAACTGATTGGTTACCGGGTAACTGACTGATCGATGACCCCTGCTGGCCTCCCAACGGCATGACCTAGTTGACGTGGGTGACCTTTTGACCCACCTCTGAAACGAAAAACAAGCTTAATAGACAATGACCTAGATATTGGGAAAAAGAAGTTTTACGTATCACTCTGGGATCTAGTAATAAGCTGACAGCTCATTTGAAATGTCTCACTGGCTTTCTGAAGGAGCTTCGAGAAAGAGTGTACGCACATAACACCTAGAACCTCATTATAGTTTTTGGTTTGAGAATTAGGTCTTGGCAGGTTAT</canonical>
            <polymorphic>TCGCATAGTTGATATCACCACCGGCTTGCATGTAACCATTGAGGAATTGACGGAAGGCAGCTAAAAAAATTTTTGGTTGAAAAAAAAATAGAACCCCACGTTTTTTTTTACTTTTGGCTTCGAAAATTGACCTGATGCGAATTCTTCGCGTACATTTGCAAAAAAAATTAAAAAATGCGAAAACTTGACACAAAAAAAATTCGTTTGATAATATTCACAAGCTTTCAAAAAAAAATCGGGGATTTGCGAAAAAAAACTAAAATTCGCTATCATCGCTATTATCGATCGCTATACTATCATCGCTATAAAATTCGCTATTATCGATGCAACCAGTTTACGAACCAAAAAGAGTCAGATAACTGATTGGTGGATTCGACGACATACTAGCATTCTTCGGCGGAGGCGGAACCGGTGGTGTCGCTATGATCGAATCGAGAATCGGAGTCGCAGATATTGTTGCAGATGTCGTCGCTGGAAAGTCTCCTTTCTCAAAACTATCKGTTGGCTCGTCTTTCACAGTCATCGGCTTTTTCGAAGTGTCGGTCTCCGGGTCGTCATCCTCCAGCTGTCGTTTTCTTTGATTCGAGCTATCCATACTGCAAGCATAGGATTTTCAAACACCTTTCTCTTTCAGCTAACCTCTATTGAACAGATGAGCGCTTGATTCCACAGGTATTCCACGAAAGTAGATTTTCAGAACTGATTGGTTACCGGGTAACTGACTGATCGATGACCCCTGCTGGCCTCCCAACGGCATGACCTAGTTGACGTGGGTGACCTTTTGACCCACCTCTGAAACGAAAAACAAGCTTAATAGACAATGACCTAGATATTGGGAAAAAGAAGTTTTACGTATCACTCTGGGATCTAGTAATAAGCTGACAGCTCATTTGAAATGTCTCACTGGCTTTCTGAAGGAGCTTCGAGAAAGAGTGTACGCACATAACACCTAGAACCTCATTATAGTTTTTGGTTTGAGAATTAGGTCTTGGCAGGTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGATATTGTTGCAGATGTC</pcr_primer_p1>
		<pcr_primer_p2>TGAAAATCTACTTTCGTGGAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCAGATATTGTTGCAGATGTCGTCGCTGGAAAGTCTCCTTTCTCAAAACTATCTGTTGGCTCGTCTTTCACAGTCATCGGCTTTTTCGAAGTGTCGGTCTCCGGGTCGTCATCCTCCAGCTGTCGTTTTCTTTGATTCGAGCTATCCATACTGCAAGCATAGGATTTTCAAACACCTTTCTCTTTCAGCTAACCTCTATTGAACAGATGAGCGCTTGATTCCACAGGTATTCCACGAAAGTAGATTTTCA</canonical_amplicon>
		<polymorphic_amplicon>GCAGATATTGTTGCAGATGTCGTCGCTGGAAAGTCTCCTTTCTCAAAACTATCKGTTGGCTCGTCTTTCACAGTCATCGGCTTTTTCGAAGTGTCGGTCTCCGGGTCGTCATCCTCCAGCTGTCGTTTTCTTTGATTCGAGCTATCCATACTGCAAGCATAGGATTTTCAAACACCTTTCTCTTTCAGCTAACCTCTATTGAACAGATGAGCGCTTGATTCCACAGGTATTCCACGAAAGTAGATTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22121</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>39216</contig_pos>
        <strand>+</strand>
        <context>CAATTTATTT[C/T]ATTATTCGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTT</left_flank>
        <right_flank>ATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTGACTATATTTAAAAAAAATTGAGGATATTATGACAAACATTTTTTTAGTTGACCTATTTTTGATATCTTTTACAGAAGCTGAAAGTAAAAGGTCTTTCTATTAGAGGGTTTTTTTTCGAAACTCTGAATCTTGGTAAATTCAATTTCCAGCATTTTTCTCTGCTATCAGGATTCCGATTCAATTTATTTTCTACTTAGATATTTCCGGGAACTTTTAGAAATTTAGAAAATTCGAAAATCCAGAAATCTTCAAATTTTCAGAATCATTTCAAAGTGCGAAATTCGAAAAACCGTATCACACAAATTTTAAGAATACAACACTCTGAAAAATGTCAAATTCTCGTATTCATGATTTTTCAAACCGTTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTA</canonical>
            <polymorphic>AAAATTGACTATATTTAAAAAAAATTGAGGATATTATGACAAACATTTTTTTAGTTGACCTATTTTTGATATCTTTTACAGAAGCTGAAAGTAAAAGGTCTTTCTATTAGAGGGTTTTTTTTCGAAACTCTGAATCTTGGTAAATTCAATTTCCAGCATTTTTCTCTGCTATCAGGATTCCGATTCAATTTATTTTCTACTTAGATATTTCCGGGAACTTTTAGAAATTTAGAAAATTCGAAAATCCAGAAATCTTCAAATTTTCAGAATCATTTCAAAGTGCGAAATTCGAAAAACCGTATCACACAAATTTTAAGAATACAACACTCTGAAAAATGTCAAATTCTCGTATTCATGATTTTTCAAACCGTTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTYATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGTCAAATTCTCGTATTCAT</pcr_primer_p1>
		<pcr_primer_p2>TGTTAGTATTTTTGATGCCAATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAATGTCAAATTCTCGTATTCATGATTTTTCAAACCGTTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACA</canonical_amplicon>
		<polymorphic_amplicon>AAATGTCAAATTCTCGTATTCATGATTTTTCAAACCGTTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTYATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22122</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>39228</contig_pos>
        <strand>+</strand>
        <context>TTATTCGTCT[C/T]TTAATATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCT</left_flank>
        <right_flank>TTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTAAAAAAAATTGAGGATATTATGACAAACATTTTTTTAGTTGACCTATTTTTGATATCTTTTACAGAAGCTGAAAGTAAAAGGTCTTTCTATTAGAGGGTTTTTTTTCGAAACTCTGAATCTTGGTAAATTCAATTTCCAGCATTTTTCTCTGCTATCAGGATTCCGATTCAATTTATTTTCTACTTAGATATTTCCGGGAACTTTTAGAAATTTAGAAAATTCGAAAATCCAGAAATCTTCAAATTTTCAGAATCATTTCAAAGTGCGAAATTCGAAAAACCGTATCACACAAATTTTAAGAATACAACACTCTGAAAAATGTCAAATTCTCGTATTCATGATTTTTCAAACCGTTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGG</canonical>
            <polymorphic>ATTTAAAAAAAATTGAGGATATTATGACAAACATTTTTTTAGTTGACCTATTTTTGATATCTTTTACAGAAGCTGAAAGTAAAAGGTCTTTCTATTAGAGGGTTTTTTTTCGAAACTCTGAATCTTGGTAAATTCAATTTCCAGCATTTTTCTCTGCTATCAGGATTCCGATTCAATTTATTTTCTACTTAGATATTTCCGGGAACTTTTAGAAATTTAGAAAATTCGAAAATCCAGAAATCTTCAAATTTTCAGAATCATTTCAAAGTGCGAAATTCGAAAAACCGTATCACACAAATTTTAAGAATACAACACTCTGAAAAATGTCAAATTCTCGTATTCATGATTTTTCAAACCGTTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTYTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGTCAAATTCTCGTATTCAT</pcr_primer_p1>
		<pcr_primer_p2>TGTTAGTATTTTTGATGCCAATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAATGTCAAATTCTCGTATTCATGATTTTTCAAACCGTTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACA</canonical_amplicon>
		<polymorphic_amplicon>AAATGTCAAATTCTCGTATTCATGATTTTTCAAACCGTTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTYTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22123</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>39276</contig_pos>
        <strand></strand>
        <context>TGTTTTGACT[A/G]RTATTGGCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACT</left_flank>
        <right_flank>TTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTTTGATATCTTTTACAGAAGCTGAAAGTAAAAGGTCTTTCTATTAGAGGGTTTTTTTTCGAAACTCTGAATCTTGGTAAATTCAATTTCCAGCATTTTTCTCTGCTATCAGGATTCCGATTCAATTTATTTTCTACTTAGATATTTCCGGGAACTTTTAGAAATTTAGAAAATTCGAAAATCCAGAAATCTTCAAATTTTCAGAATCATTTCAAAGTGCGAAATTCGAAAAACCGTATCACACAAATTTTAAGAATACAACACTCTGAAAAATGTCAAATTCTCGTATTCATGATTTTTCAAACCGTTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGA</canonical>
            <polymorphic>TATTTTTGATATCTTTTACAGAAGCTGAAAGTAAAAGGTCTTTCTATTAGAGGGTTTTTTTTCGAAACTCTGAATCTTGGTAAATTCAATTTCCAGCATTTTTCTCTGCTATCAGGATTCCGATTCAATTTATTTTCTACTTAGATATTTCCGGGAACTTTTAGAAATTTAGAAAATTCGAAAATCCAGAAATCTTCAAATTTTCAGAATCATTTCAAAGTGCGAAATTCGAAAAACCGTATCACACAAATTTTAAGAATACAACACTCTGAAAAATGTCAAATTCTCGTATTCATGATTTTTCAAACCGTTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTRTTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCATTGTTTACACTGTTTAGC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTCTTCCTTCTAATTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTRTTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22124</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>39301</contig_pos>
        <strand>+</strand>
        <context>AATACTAACA[C/G]CAGTAGTAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACA</left_flank>
        <right_flank>CAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAAGTAAAAGGTCTTTCTATTAGAGGGTTTTTTTTCGAAACTCTGAATCTTGGTAAATTCAATTTCCAGCATTTTTCTCTGCTATCAGGATTCCGATTCAATTTATTTTCTACTTAGATATTTCCGGGAACTTTTAGAAATTTAGAAAATTCGAAAATCCAGAAATCTTCAAATTTTCAGAATCATTTCAAAGTGCGAAATTCGAAAAACCGTATCACACAAATTTTAAGAATACAACACTCTGAAAAATGTCAAATTCTCGTATTCATGATTTTTCAAACCGTTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATCCCCAAAAAAACCGT</canonical>
            <polymorphic>TGAAAGTAAAAGGTCTTTCTATTAGAGGGTTTTTTTTCGAAACTCTGAATCTTGGTAAATTCAATTTCCAGCATTTTTCTCTGCTATCAGGATTCCGATTCAATTTATTTTCTACTTAGATATTTCCGGGAACTTTTAGAAATTTAGAAAATTCGAAAATCCAGAAATCTTCAAATTTTCAGAATCATTTCAAAGTGCGAAATTCGAAAAACCGTATCACACAAATTTTAAGAATACAACACTCTGAAAAATGTCAAATTCTCGTATTCATGATTTTTCAAACCGTTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACASCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATCCCCAAAAAAACCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>256 197 167 158 69 64 22 20 18 14 13 2</canonical_bands>
                <polymorphic_bands>423 197 158 69 64 22 20 18 14 13 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAAAATTGAAAGTGATACTCAA</pcr_primer_p1>
		<pcr_primer_p2>CGCTTTCTATTAGCTGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>369</pcr_amplicon_size>
		<canonical_amplicon>TGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCG</canonical_amplicon>
		<polymorphic_amplicon>TGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACASCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22133</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>39494</contig_pos>
        <strand>+</strand>
        <context>GCGCTTAAAC[A/C]TWTTAWAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAAC</left_flank>
        <right_flank>TTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGCGAAATTCGAAAAACCGTATCACACAAATTTTAAGAATACAACACTCTGAAAAATGTCAAATTCTCGTATTCATGATTTTTCAAACCGTTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATCCCCAAAAAAACCGTCATTTCACGCCCCATCTAGGTCACACAGCTGCTTCTTTTCTTTTTTTTTTCTTGAAAAAAAGATCGTCGTACCCCTGCGAACATCTGTTGGGCACAAGGAGTACACAGAGGATTCAAAAGGCCCCATTTCTATTTTTAATTTTAATTTTCTGATTAATGAAAATAATTAATCCATTTTGGATTCAGTTTCTCT</canonical>
            <polymorphic>AGTGCGAAATTCGAAAAACCGTATCACACAAATTTTAAGAATACAACACTCTGAAAAATGTCAAATTCTCGTATTCATGATTTTTCAAACCGTTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACMTTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATCCCCAAAAAAACCGTCATTTCACGCCCCATCTAGGTCACACAGCTGCTTCTTTTCTTTTTTTTTTCTTGAAAAAAAGATCGTCGTACCCCTGCGAACATCTGTTGGGCACAAGGAGTACACAGAGGATTCAAAAGGCCCCATTTCTATTTTTAATTTTAATTTTCTGATTAATGAAAATAATTAATCCATTTTGGATTCAGTTTCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAAGGAAGACAAAATACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGTGGAAATCTTAATTTGAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACA</canonical_amplicon>
		<polymorphic_amplicon>TAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACMTTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22134</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>39496</contig_pos>
        <strand>+</strand>
        <context>GCTTAAACMT[A/T]TTAWAACAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACAT</left_flank>
        <right_flank>TTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCGAAATTCGAAAAACCGTATCACACAAATTTTAAGAATACAACACTCTGAAAAATGTCAAATTCTCGTATTCATGATTTTTCAAACCGTTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATCCCCAAAAAAACCGTCATTTCACGCCCCATCTAGGTCACACAGCTGCTTCTTTTCTTTTTTTTTTCTTGAAAAAAAGATCGTCGTACCCCTGCGAACATCTGTTGGGCACAAGGAGTACACAGAGGATTCAAAAGGCCCCATTTCTATTTTTAATTTTAATTTTCTGATTAATGAAAATAATTAATCCATTTTGGATTCAGTTTCTCTTT</canonical>
            <polymorphic>TGCGAAATTCGAAAAACCGTATCACACAAATTTTAAGAATACAACACTCTGAAAAATGTCAAATTCTCGTATTCATGATTTTTCAAACCGTTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATWTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATCCCCAAAAAAACCGTCATTTCACGCCCCATCTAGGTCACACAGCTGCTTCTTTTCTTTTTTTTTTCTTGAAAAAAAGATCGTCGTACCCCTGCGAACATCTGTTGGGCACAAGGAGTACACAGAGGATTCAAAAGGCCCCATTTCTATTTTTAATTTTAATTTTCTGATTAATGAAAATAATTAATCCATTTTGGATTCAGTTTCTCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>498 299 203</canonical_bands>
                <polymorphic_bands>797 203</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGAAGGAAGACAAAATACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGTGGAAATCTTAATTTGAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACA</canonical_amplicon>
		<polymorphic_amplicon>TAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATWTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22135</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>39500</contig_pos>
        <strand>+</strand>
        <context>AAACMTWTTA[A/T]AACAAATTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTA</left_flank>
        <right_flank>AACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTCGAAAAACCGTATCACACAAATTTTAAGAATACAACACTCTGAAAAATGTCAAATTCTCGTATTCATGATTTTTCAAACCGTTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATCCCCAAAAAAACCGTCATTTCACGCCCCATCTAGGTCACACAGCTGCTTCTTTTCTTTTTTTTTTCTTGAAAAAAAGATCGTCGTACCCCTGCGAACATCTGTTGGGCACAAGGAGTACACAGAGGATTCAAAAGGCCCCATTTCTATTTTTAATTTTAATTTTCTGATTAATGAAAATAATTAATCCATTTTGGATTCAGTTTCTCTTTTTTA</canonical>
            <polymorphic>AAATTCGAAAAACCGTATCACACAAATTTTAAGAATACAACACTCTGAAAAATGTCAAATTCTCGTATTCATGATTTTTCAAACCGTTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAWAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATCCCCAAAAAAACCGTCATTTCACGCCCCATCTAGGTCACACAGCTGCTTCTTTTCTTTTTTTTTTCTTGAAAAAAAGATCGTCGTACCCCTGCGAACATCTGTTGGGCACAAGGAGTACACAGAGGATTCAAAAGGCCCCATTTCTATTTTTAATTTTAATTTTCTGATTAATGAAAATAATTAATCCATTTTGGATTCAGTTTCTCTTTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 299 199</canonical_bands>
                <polymorphic_bands>801 199</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>374 223 169 45 36 32 31 29 21 13 12 9 6</canonical_bands>
                <polymorphic_bands>374 223 169 45 36 32 31 30 29 13 12 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGAAGGAAGACAAAATACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGTGGAAATCTTAATTTGAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACA</canonical_amplicon>
		<polymorphic_amplicon>TAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAWAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22136</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>39525</contig_pos>
        <strand>+</strand>
        <context>GTCTTAAAAA[C/T]GACTGGAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAA</left_flank>
        <right_flank>GACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTAAGAATACAACACTCTGAAAAATGTCAAATTCTCGTATTCATGATTTTTCAAACCGTTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATCCCCAAAAAAACCGTCATTTCACGCCCCATCTAGGTCACACAGCTGCTTCTTTTCTTTTTTTTTTCTTGAAAAAAAGATCGTCGTACCCCTGCGAACATCTGTTGGGCACAAGGAGTACACAGAGGATTCAAAAGGCCCCATTTCTATTTTTAATTTTAATTTTCTGATTAATGAAAATAATTAATCCATTTTGGATTCAGTTTCTCTTTTTTACTGTCGTTGTCCTACTTTACCTAGG</canonical>
            <polymorphic>ATTTTAAGAATACAACACTCTGAAAAATGTCAAATTCTCGTATTCATGATTTTTCAAACCGTTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAAYGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATCCCCAAAAAAACCGTCATTTCACGCCCCATCTAGGTCACACAGCTGCTTCTTTTCTTTTTTTTTTCTTGAAAAAAAGATCGTCGTACCCCTGCGAACATCTGTTGGGCACAAGGAGTACACAGAGGATTCAAAAGGCCCCATTTCTATTTTTAATTTTAATTTTCTGATTAATGAAAATAATTAATCCATTTTGGATTCAGTTTCTCTTTTTTACTGTCGTTGTCCTACTTTACCTAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTGAATGAACGAAAATTA</pcr_primer_p1>
		<pcr_primer_p2>TTGTCTCATTTAGCGGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAAYGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22137</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>39597</contig_pos>
        <strand></strand>
        <context>GAAAACTAAA[A/T]ATTTCYTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAA</left_flank>
        <right_flank>ATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATCCCCAAAAAAACCGTCATTTCACGCCCCATCTAGGTCACACAGCTGCTTCTTTTCTTTTTTTTTTCTTGAAAAAAAGATCGTCGTACCCCTGCGAACATCTGTTGGGCACAAGGAGTACACAGAGGATTCAAAAGGCCCCATTTCTATTTTTAATTTTAATTTTCTGATTAATGAAAATAATTAATCCATTTTGGATTCAGTTTCTCTTTTTTACTGTCGTTGTCCTACTTTACCTAGGAAAAAAATCATTAATAATAACATTCACCAAATTCTGTATGTATGTAGCGTGCCTTTTCCCTCATTCAAGGTT</canonical>
            <polymorphic>TTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAWATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATCCCCAAAAAAACCGTCATTTCACGCCCCATCTAGGTCACACAGCTGCTTCTTTTCTTTTTTTTTTCTTGAAAAAAAGATCGTCGTACCCCTGCGAACATCTGTTGGGCACAAGGAGTACACAGAGGATTCAAAAGGCCCCATTTCTATTTTTAATTTTAATTTTCTGATTAATGAAAATAATTAATCCATTTTGGATTCAGTTTCTCTTTTTTACTGTCGTTGTCCTACTTTACCTAGGAAAAAAATCATTAATAATAACATTCACCAAATTCTGTATGTATGTAGCGTGCCTTTTCCCTCATTCAAGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>417 294 140 65 43 34 7</canonical_bands>
                <polymorphic_bands>417 294 140 99 43 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>223 113 89 78 72 58 55 43 36 34 34 33 29 27 25 21 17 7 6</canonical_bands>
                <polymorphic_bands>223 113 89 78 72 70 58 55 43 34 33 29 27 25 21 17 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTGAATGAACGAAAATTA</pcr_primer_p1>
		<pcr_primer_p2>TTGTCTCATTTAGCGGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAWATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22138</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>39603</contig_pos>
        <strand></strand>
        <context>TAAAWATTTC[T/C]TGAAGTTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTC</left_flank>
        <right_flank>TGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATCCCCAAAAAAACCGTCATTTCACGCCCCATCTAGGTCACACAGCTGCTTCTTTTCTTTTTTTTTTCTTGAAAAAAAGATCGTCGTACCCCTGCGAACATCTGTTGGGCACAAGGAGTACACAGAGGATTCAAAAGGCCCCATTTCTATTTTTAATTTTAATTTTCTGATTAATGAAAATAATTAATCCATTTTGGATTCAGTTTCTCTTTTTTACTGTCGTTGTCCTACTTTACCTAGGAAAAAAATCATTAATAATAACATTCACCAAATTCTGTATGTATGTAGCGTGCCTTTTCCCTCATTCAAGGTTAACCGA</canonical>
            <polymorphic>ACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCYTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATCCCCAAAAAAACCGTCATTTCACGCCCCATCTAGGTCACACAGCTGCTTCTTTTCTTTTTTTTTTCTTGAAAAAAAGATCGTCGTACCCCTGCGAACATCTGTTGGGCACAAGGAGTACACAGAGGATTCAAAAGGCCCCATTTCTATTTTTAATTTTAATTTTCTGATTAATGAAAATAATTAATCCATTTTGGATTCAGTTTCTCTTTTTTACTGTCGTTGTCCTACTTTACCTAGGAAAAAAATCATTAATAATAACATTCACCAAATTCTGTATGTATGTAGCGTGCCTTTTCCCTCATTCAAGGTTAACCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCTGAAACACTCAAATTAAGA</pcr_primer_p1>
		<pcr_primer_p2>GATGCATTCAATCAAAGAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATC</canonical_amplicon>
		<polymorphic_amplicon>AAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCYTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22139</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>39626</contig_pos>
        <strand></strand>
        <context>AACTGAAAAA[T/A]CAGAAATTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAA</left_flank>
        <right_flank>CAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATCCCCAAAAAAACCGTCATTTCACGCCCCATCTAGGTCACACAGCTGCTTCTTTTCTTTTTTTTTTCTTGAAAAAAAGATCGTCGTACCCCTGCGAACATCTGTTGGGCACAAGGAGTACACAGAGGATTCAAAAGGCCCCATTTCTATTTTTAATTTTAATTTTCTGATTAATGAAAATAATTAATCCATTTTGGATTCAGTTTCTCTTTTTTACTGTCGTTGTCCTACTTTACCTAGGAAAAAAATCATTAATAATAACATTCACCAAATTCTGTATGTATGTAGCGTGCCTTTTCCCTCATTCAAGGTTAACCGATTGAGTTGAAACCTGACAGGTAG</canonical>
            <polymorphic>GAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAAWCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATCCCCAAAAAAACCGTCATTTCACGCCCCATCTAGGTCACACAGCTGCTTCTTTTCTTTTTTTTTTCTTGAAAAAAAGATCGTCGTACCCCTGCGAACATCTGTTGGGCACAAGGAGTACACAGAGGATTCAAAAGGCCCCATTTCTATTTTTAATTTTAATTTTCTGATTAATGAAAATAATTAATCCATTTTGGATTCAGTTTCTCTTTTTTACTGTCGTTGTCCTACTTTACCTAGGAAAAAAATCATTAATAATAACATTCACCAAATTCTGTATGTATGTAGCGTGCCTTTTCCCTCATTCAAGGTTAACCGATTGAGTTGAAACCTGACAGGTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>324 227 174 100 78 48 37 12</canonical_bands>
                <polymorphic_bands>402 227 174 100 48 37 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATCTGAAACACTCAAATTAAGA</pcr_primer_p1>
		<pcr_primer_p2>GATGCATTCAATCAAAGAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATC</canonical_amplicon>
		<polymorphic_amplicon>AAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAAWCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22146</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>45282</contig_pos>
        <strand>+</strand>
        <context>ARRTCATTTG[A/T]CTTTTAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAACACCGCCCGAGTAGAGGTCAGGGATCTGGAATAATCGAAATCATTTG</left_flank>
        <right_flank>CTTTTAAAAATCAAGCGGAATGGGGTCCTGGGCTACAGAAATCAGGGCCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAAAATTCCTAAAACTTACCAAAAGTGTACTAGCCAATGGTCGCAACTCGGTCGCCTTCCAATTCTTATTGATCCAATCTGAGCACGACGCGGCGACCTCATTCCTCGAACTCGAGTCTCCAGCTACCGTAGCCGCAAACGAGTTCTGTTGAGTAACACAAATCGGTTTGAGCATTTGTGACATCACCCAGAATCGCCAGTCCTTTTTGGCACTATCCTTGACGTAGCGATCAAAGAAAGTTTCCAGGGAAGTTTTGGAGTCAATCTGAGTGGATGTCGATGGGGCGCTCGATTGGGGAAGATTAGTTTGAATCGATGAGATTCGCTGATTGAGCTTCTCAATTTTCGCCTTGGCTTCCTCGATTTTCTGCGATTTCTCCCATTTGTCATTTTGAAGGCGTCGGATGTGATCGGCGGCTTTCGCGAGGACTACCGCGTTGGTGGGTTTAACACCGCCCGAGTAGAGGTCAGGGATCTGGAATAATCGAAATCATTTGTCTTTTAAAAATCAAGCGGAATGGGGTCCTGGGCTACAGAAATCAGGGCCGCAGCCGGCCGCGTACATTTAGCAATTTGAAATTTGGTGTCCTAGAAATCCTAAATTCAAGAAAGTTAGCCCCCCGGCAGCTACATGAACCGAGAAAGCTAAATTTTATTATTCCAGTTCAATTTTCAGGTTGAAAAATGTCAATTTTTAGTTATAGCGATTTGAACTTTAGTGGCCTAGAAATCCAAAACTAGGCCATCAACATTTTTGAAATTAACAAAAACTCACAATATCCATCAACTGATCAAAGCCATCCTTCAACGCACTTCTCCTATTCTGCTCGGCGTGCAAATGAAGAATCCGTTTTCTTTCCTCCGGATGTAATGTGGAATCTGGAGCCTGTCTTCTCATAGACTTCACACTCGATGGAGCACTCATCGGAAGTGGTTCTTCTTTCGGCATCGTCTGCTCCGCCGAAATGCTTGCACTTGCTGGAAGTACTGTAGTTTGT</canonical>
            <polymorphic>TTCAAAATTCCTAAAACTTACCAAAAGTGTACTAGCCAATGGTCGCAACTCGGTCGCCTTCCAATTCTTATTGATCCAATCTGAGCACGACGCGGCGACCTCATTCCTCGAACTCGAGTCTCCAGCTACCGTAGCCGCAAACGAGTTCTGTTGAGTAACACAAATCGGTTTGAGCATTTGTGACATCACCCAGAATCGCCAGTCCTTTTTGGCACTATCCTTGACGTAGCGATCAAAGAAAGTTTCCAGGGAAGTTTTGGAGTCAATCTGAGTGGATGTCGATGGGGCGCTCGATTGGGGAAGATTAGTTTGAATCGATGAGATTCGCTGATTGAGCTTCTCAATTTTCGCCTTGGCTTCCTCGATTTTCTGCGATTTCTCCCATTTGTCATTTTGAAGGCGTCGGATGTGATCGGCGGCTTTCGCGAGGACTACCGCGTTGGTGGGTTTAACACCGCCCGAGTAGAGGTCAGGGATCTGGAATAATCGAAATCATTTGWCTTTTAAAAATCAAGCGGAATGGGGTCCTGGGCTACAGAAATCAGGGCCGCAGCCGGCCGCGTACATTTAGCAATTTGAAATTTGGTGTCCTAGAAATCCTAAATTCAAGAAAGTTAGCCCCCCGGCAGCTACATGAACCGAGAAAGCTAAATTTTATTATTCCAGTTCAATTTTCAGGTTGAAAAATGTCAATTTTTAGTTATAGCGATTTGAACTTTAGTGGCCTAGAAATCCAAAACTAGGCCATCAACATTTTTGAAATTAACAAAAACTCACAATATCCATCAACTGATCAAAGCCATCCTTCAACGCACTTCTCCTATTCTGCTCGGCGTGCAAATGAAGAATCCGTTTTCTTTCCTCCGGATGTAATGTGGAATCTGGAGCCTGTCTTCTCATAGACTTCACACTCGATGGAGCACTCATCGGAAGTGGTTCTTCTTTCGGCATCGTCTGCTCCGCCGAAATGCTTGCACTTGCTGGAAGTACTGTAGTTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCCATTTGTCATTTTGAAG</pcr_primer_p1>
		<pcr_primer_p2>GCTTTGATCAGTTGATGGATA</pcr_primer_p2>
		<pcr_amplicon_size>421</pcr_amplicon_size>
		<canonical_amplicon>TCCCATTTGTCATTTTGAAGGCGTCGGATGTGATCGGCGGCTTTCGCGAGGACTACCGCGTTGGTGGGTTTAACACCGCCCGAGTAGAGGTCAGGGATCTGGAATAATCGAAATCATTTGTCTTTTAAAAATCAAGCGGAATGGGGTCCTGGGCTACAGAAATCAGGGCCGCAGCCGGCCGCGTACATTTAGCAATTTGAAATTTGGTGTCCTAGAAATCCTAAATTCAAGAAAGTTAGCCCCCCGGCAGCTACATGAACCGAGAAAGCTAAATTTTATTATTCCAGTTCAATTTTCAGGTTGAAAAATGTCAATTTTTAGTTATAGCGATTTGAACTTTAGTGGCCTAGAAATCCAAAACTAGGCCATCAACATTTTTGAAATTAACAAAAACTCACAATATCCATCAACTGATCAAAGC</canonical_amplicon>
		<polymorphic_amplicon>TCCCATTTGTCATTTTGAAGGCGTCGGATGTGATCGGCGGCTTTCGCGAGGACTACCGCGTTGGTGGGTTTAACACCGCCCGAGTAGAGGTCAGGGATCTGGAATAATCGAAATCATTTGWCTTTTAAAAATCAAGCGGAATGGGGTCCTGGGCTACAGAAATCAGGGCCGCAGCCGGCCGCGTACATTTAGCAATTTGAAATTTGGTGTCCTAGAAATCCTAAATTCAAGAAAGTTAGCCCCCCGGCAGCTACATGAACCGAGAAAGCTAAATTTTATTATTCCAGTTCAATTTTCAGGTTGAAAAATGTCAATTTTTAGTTATAGCGATTTGAACTTTAGTGGCCTAGAAATCCAAAACTAGGCCATCAACATTTTTGAAATTAACAAAAACTCACAATATCCATCAACTGATCAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22147</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>45274</contig_pos>
        <strand>+</strand>
        <context>AATAATCGAR[A/G]TCATTTGWCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTGGGTTTAACACCGCCCGAGTAGAGGTCAGGGATCTGGAATAATCGAA</left_flank>
        <right_flank>TCATTTGTCTTTTAAAAATCAAGCGGAATGGGGTCCTGGGCTACAGAAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAAACTTCAAAATTCCTAAAACTTACCAAAAGTGTACTAGCCAATGGTCGCAACTCGGTCGCCTTCCAATTCTTATTGATCCAATCTGAGCACGACGCGGCGACCTCATTCCTCGAACTCGAGTCTCCAGCTACCGTAGCCGCAAACGAGTTCTGTTGAGTAACACAAATCGGTTTGAGCATTTGTGACATCACCCAGAATCGCCAGTCCTTTTTGGCACTATCCTTGACGTAGCGATCAAAGAAAGTTTCCAGGGAAGTTTTGGAGTCAATCTGAGTGGATGTCGATGGGGCGCTCGATTGGGGAAGATTAGTTTGAATCGATGAGATTCGCTGATTGAGCTTCTCAATTTTCGCCTTGGCTTCCTCGATTTTCTGCGATTTCTCCCATTTGTCATTTTGAAGGCGTCGGATGTGATCGGCGGCTTTCGCGAGGACTACCGCGTTGGTGGGTTTAACACCGCCCGAGTAGAGGTCAGGGATCTGGAATAATCGAAATCATTTGTCTTTTAAAAATCAAGCGGAATGGGGTCCTGGGCTACAGAAATCAGGGCCGCAGCCGGCCGCGTACATTTAGCAATTTGAAATTTGGTGTCCTAGAAATCCTAAATTCAAGAAAGTTAGCCCCCCGGCAGCTACATGAACCGAGAAAGCTAAATTTTATTATTCCAGTTCAATTTTCAGGTTGAAAAATGTCAATTTTTAGTTATAGCGATTTGAACTTTAGTGGCCTAGAAATCCAAAACTAGGCCATCAACATTTTTGAAATTAACAAAAACTCACAATATCCATCAACTGATCAAAGCCATCCTTCAACGCACTTCTCCTATTCTGCTCGGCGTGCAAATGAAGAATCCGTTTTCTTTCCTCCGGATGTAATGTGGAATCTGGAGCCTGTCTTCTCATAGACTTCACACTCGATGGAGCACTCATCGGAAGTGGTTCTTCTTTCGGCATCGTCTGCTCCGCCGAAATGCTTGCACTTGCTGGAAGTACTG</canonical>
            <polymorphic>TTAAAAACTTCAAAATTCCTAAAACTTACCAAAAGTGTACTAGCCAATGGTCGCAACTCGGTCGCCTTCCAATTCTTATTGATCCAATCTGAGCACGACGCGGCGACCTCATTCCTCGAACTCGAGTCTCCAGCTACCGTAGCCGCAAACGAGTTCTGTTGAGTAACACAAATCGGTTTGAGCATTTGTGACATCACCCAGAATCGCCAGTCCTTTTTGGCACTATCCTTGACGTAGCGATCAAAGAAAGTTTCCAGGGAAGTTTTGGAGTCAATCTGAGTGGATGTCGATGGGGCGCTCGATTGGGGAAGATTAGTTTGAATCGATGAGATTCGCTGATTGAGCTTCTCAATTTTCGCCTTGGCTTCCTCGATTTTCTGCGATTTCTCCCATTTGTCATTTTGAAGGCGTCGGATGTGATCGGCGGCTTTCGCGAGGACTACCGCGTTGGTGGGTTTAACACCGCCCGAGTAGAGGTCAGGGATCTGGAATAATCGAARTCATTTGTCTTTTAAAAATCAAGCGGAATGGGGTCCTGGGCTACAGAAATCAGGGCCGCAGCCGGCCGCGTACATTTAGCAATTTGAAATTTGGTGTCCTAGAAATCCTAAATTCAAGAAAGTTAGCCCCCCGGCAGCTACATGAACCGAGAAAGCTAAATTTTATTATTCCAGTTCAATTTTCAGGTTGAAAAATGTCAATTTTTAGTTATAGCGATTTGAACTTTAGTGGCCTAGAAATCCAAAACTAGGCCATCAACATTTTTGAAATTAACAAAAACTCACAATATCCATCAACTGATCAAAGCCATCCTTCAACGCACTTCTCCTATTCTGCTCGGCGTGCAAATGAAGAATCCGTTTTCTTTCCTCCGGATGTAATGTGGAATCTGGAGCCTGTCTTCTCATAGACTTCACACTCGATGGAGCACTCATCGGAAGTGGTTCTTCTTTCGGCATCGTCTGCTCCGCCGAAATGCTTGCACTTGCTGGAAGTACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCCATTTGTCATTTTGAAG</pcr_primer_p1>
		<pcr_primer_p2>GCTTTGATCAGTTGATGGATA</pcr_primer_p2>
		<pcr_amplicon_size>421</pcr_amplicon_size>
		<canonical_amplicon>TCCCATTTGTCATTTTGAAGGCGTCGGATGTGATCGGCGGCTTTCGCGAGGACTACCGCGTTGGTGGGTTTAACACCGCCCGAGTAGAGGTCAGGGATCTGGAATAATCGAAATCATTTGTCTTTTAAAAATCAAGCGGAATGGGGTCCTGGGCTACAGAAATCAGGGCCGCAGCCGGCCGCGTACATTTAGCAATTTGAAATTTGGTGTCCTAGAAATCCTAAATTCAAGAAAGTTAGCCCCCCGGCAGCTACATGAACCGAGAAAGCTAAATTTTATTATTCCAGTTCAATTTTCAGGTTGAAAAATGTCAATTTTTAGTTATAGCGATTTGAACTTTAGTGGCCTAGAAATCCAAAACTAGGCCATCAACATTTTTGAAATTAACAAAAACTCACAATATCCATCAACTGATCAAAGC</canonical_amplicon>
		<polymorphic_amplicon>TCCCATTTGTCATTTTGAAGGCGTCGGATGTGATCGGCGGCTTTCGCGAGGACTACCGCGTTGGTGGGTTTAACACCGCCCGAGTAGAGGTCAGGGATCTGGAATAATCGAARTCATTTGTCTTTTAAAAATCAAGCGGAATGGGGTCCTGGGCTACAGAAATCAGGGCCGCAGCCGGCCGCGTACATTTAGCAATTTGAAATTTGGTGTCCTAGAAATCCTAAATTCAAGAAAGTTAGCCCCCCGGCAGCTACATGAACCGAGAAAGCTAAATTTTATTATTCCAGTTCAATTTTCAGGTTGAAAAATGTCAATTTTTAGTTATAGCGATTTGAACTTTAGTGGCCTAGAAATCCAAAACTAGGCCATCAACATTTTTGAAATTAACAAAAACTCACAATATCCATCAACTGATCAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22148</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>45273</contig_pos>
        <strand>+</strand>
        <context>GAATAATCGA[A/G]RTCATTTGWC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGTGGGTTTAACACCGCCCGAGTAGAGGTCAGGGATCTGGAATAATCGA</left_flank>
        <right_flank>ATCATTTGTCTTTTAAAAATCAAGCGGAATGGGGTCCTGGGCTACAGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAAAAACTTCAAAATTCCTAAAACTTACCAAAAGTGTACTAGCCAATGGTCGCAACTCGGTCGCCTTCCAATTCTTATTGATCCAATCTGAGCACGACGCGGCGACCTCATTCCTCGAACTCGAGTCTCCAGCTACCGTAGCCGCAAACGAGTTCTGTTGAGTAACACAAATCGGTTTGAGCATTTGTGACATCACCCAGAATCGCCAGTCCTTTTTGGCACTATCCTTGACGTAGCGATCAAAGAAAGTTTCCAGGGAAGTTTTGGAGTCAATCTGAGTGGATGTCGATGGGGCGCTCGATTGGGGAAGATTAGTTTGAATCGATGAGATTCGCTGATTGAGCTTCTCAATTTTCGCCTTGGCTTCCTCGATTTTCTGCGATTTCTCCCATTTGTCATTTTGAAGGCGTCGGATGTGATCGGCGGCTTTCGCGAGGACTACCGCGTTGGTGGGTTTAACACCGCCCGAGTAGAGGTCAGGGATCTGGAATAATCGAAATCATTTGTCTTTTAAAAATCAAGCGGAATGGGGTCCTGGGCTACAGAAATCAGGGCCGCAGCCGGCCGCGTACATTTAGCAATTTGAAATTTGGTGTCCTAGAAATCCTAAATTCAAGAAAGTTAGCCCCCCGGCAGCTACATGAACCGAGAAAGCTAAATTTTATTATTCCAGTTCAATTTTCAGGTTGAAAAATGTCAATTTTTAGTTATAGCGATTTGAACTTTAGTGGCCTAGAAATCCAAAACTAGGCCATCAACATTTTTGAAATTAACAAAAACTCACAATATCCATCAACTGATCAAAGCCATCCTTCAACGCACTTCTCCTATTCTGCTCGGCGTGCAAATGAAGAATCCGTTTTCTTTCCTCCGGATGTAATGTGGAATCTGGAGCCTGTCTTCTCATAGACTTCACACTCGATGGAGCACTCATCGGAAGTGGTTCTTCTTTCGGCATCGTCTGCTCCGCCGAAATGCTTGCACTTGCTGGAAGTACT</canonical>
            <polymorphic>TTTAAAAACTTCAAAATTCCTAAAACTTACCAAAAGTGTACTAGCCAATGGTCGCAACTCGGTCGCCTTCCAATTCTTATTGATCCAATCTGAGCACGACGCGGCGACCTCATTCCTCGAACTCGAGTCTCCAGCTACCGTAGCCGCAAACGAGTTCTGTTGAGTAACACAAATCGGTTTGAGCATTTGTGACATCACCCAGAATCGCCAGTCCTTTTTGGCACTATCCTTGACGTAGCGATCAAAGAAAGTTTCCAGGGAAGTTTTGGAGTCAATCTGAGTGGATGTCGATGGGGCGCTCGATTGGGGAAGATTAGTTTGAATCGATGAGATTCGCTGATTGAGCTTCTCAATTTTCGCCTTGGCTTCCTCGATTTTCTGCGATTTCTCCCATTTGTCATTTTGAAGGCGTCGGATGTGATCGGCGGCTTTCGCGAGGACTACCGCGTTGGTGGGTTTAACACCGCCCGAGTAGAGGTCAGGGATCTGGAATAATCGARATCATTTGTCTTTTAAAAATCAAGCGGAATGGGGTCCTGGGCTACAGAAATCAGGGCCGCAGCCGGCCGCGTACATTTAGCAATTTGAAATTTGGTGTCCTAGAAATCCTAAATTCAAGAAAGTTAGCCCCCCGGCAGCTACATGAACCGAGAAAGCTAAATTTTATTATTCCAGTTCAATTTTCAGGTTGAAAAATGTCAATTTTTAGTTATAGCGATTTGAACTTTAGTGGCCTAGAAATCCAAAACTAGGCCATCAACATTTTTGAAATTAACAAAAACTCACAATATCCATCAACTGATCAAAGCCATCCTTCAACGCACTTCTCCTATTCTGCTCGGCGTGCAAATGAAGAATCCGTTTTCTTTCCTCCGGATGTAATGTGGAATCTGGAGCCTGTCTTCTCATAGACTTCACACTCGATGGAGCACTCATCGGAAGTGGTTCTTCTTTCGGCATCGTCTGCTCCGCCGAAATGCTTGCACTTGCTGGAAGTACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCCATTTGTCATTTTGAAG</pcr_primer_p1>
		<pcr_primer_p2>GCTTTGATCAGTTGATGGATA</pcr_primer_p2>
		<pcr_amplicon_size>421</pcr_amplicon_size>
		<canonical_amplicon>TCCCATTTGTCATTTTGAAGGCGTCGGATGTGATCGGCGGCTTTCGCGAGGACTACCGCGTTGGTGGGTTTAACACCGCCCGAGTAGAGGTCAGGGATCTGGAATAATCGAAATCATTTGTCTTTTAAAAATCAAGCGGAATGGGGTCCTGGGCTACAGAAATCAGGGCCGCAGCCGGCCGCGTACATTTAGCAATTTGAAATTTGGTGTCCTAGAAATCCTAAATTCAAGAAAGTTAGCCCCCCGGCAGCTACATGAACCGAGAAAGCTAAATTTTATTATTCCAGTTCAATTTTCAGGTTGAAAAATGTCAATTTTTAGTTATAGCGATTTGAACTTTAGTGGCCTAGAAATCCAAAACTAGGCCATCAACATTTTTGAAATTAACAAAAACTCACAATATCCATCAACTGATCAAAGC</canonical_amplicon>
		<polymorphic_amplicon>TCCCATTTGTCATTTTGAAGGCGTCGGATGTGATCGGCGGCTTTCGCGAGGACTACCGCGTTGGTGGGTTTAACACCGCCCGAGTAGAGGTCAGGGATCTGGAATAATCGARATCATTTGTCTTTTAAAAATCAAGCGGAATGGGGTCCTGGGCTACAGAAATCAGGGCCGCAGCCGGCCGCGTACATTTAGCAATTTGAAATTTGGTGTCCTAGAAATCCTAAATTCAAGAAAGTTAGCCCCCCGGCAGCTACATGAACCGAGAAAGCTAAATTTTATTATTCCAGTTCAATTTTCAGGTTGAAAAATGTCAATTTTTAGTTATAGCGATTTGAACTTTAGTGGCCTAGAAATCCAAAACTAGGCCATCAACATTTTTGAAATTAACAAAAACTCACAATATCCATCAACTGATCAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22149</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>45017</contig_pos>
        <strand>+</strand>
        <context>CGTAGCGATC[A/G]AAGAAAGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCACCCAGAATCGCCAGTCCTTTTTGGCACTATCCTTGACGTAGCGATC</left_flank>
        <right_flank>AAGAAAGTTTCCAGGGAAGTTTTGGAGTCAATCTGAGTGGATGTCGATGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTCAAAGTGGAAGCATCCTTTTAGTGAAGAAAAAAAGCGCAGAGAAGGCAGTGTGCTTTGAAGGCGCATATCTCAAAAACTAGCAAAGCTGCAAAAAAGTTGTCAACTACAAAAAAGTTTCGAACGAATCTGAAAATTCTAAAATACTTATGTAAGACGTCGAAGTTAGCTGATCTTCTACTACAAAAGTGAAAATCATCTTCCGGCTATAGGACGACACATGGCTCATATTAAAGCAGCCAACTAGAATTTATTTTAAAAACTTCAAAATTCCTAAAACTTACCAAAAGTGTACTAGCCAATGGTCGCAACTCGGTCGCCTTCCAATTCTTATTGATCCAATCTGAGCACGACGCGGCGACCTCATTCCTCGAACTCGAGTCTCCAGCTACCGTAGCCGCAAACGAGTTCTGTTGAGTAACACAAATCGGTTTGAGCATTTGTGACATCACCCAGAATCGCCAGTCCTTTTTGGCACTATCCTTGACGTAGCGATCAAAGAAAGTTTCCAGGGAAGTTTTGGAGTCAATCTGAGTGGATGTCGATGGGGCGCTCGATTGGGGAAGATTAGTTTGAATCGATGAGATTCGCTGATTGAGCTTCTCAATTTTCGCCTTGGCTTCCTCGATTTTCTGCGATTTCTCCCATTTGTCATTTTGAAGGCGTCGGATGTGATCGGCGGCTTTCGCGAGGACTACCGCGTTGGTGGGTTTAACACCGCCCGAGTAGAGGTCAGGGATCTGGAATAATCGAAATCATTTGTCTTTTAAAAATCAAGCGGAATGGGGTCCTGGGCTACAGAAATCAGGGCCGCAGCCGGCCGCGTACATTTAGCAATTTGAAATTTGGTGTCCTAGAAATCCTAAATTCAAGAAAGTTAGCCCCCCGGCAGCTACATGAACCGAGAAAGCTAAATTTTATTATTCCAGTTCAATTTTCAGGTTGAAAAATGTCAATTTTTAGTTATAGCGATTTGAACTTTAGTGGCCTAGAAATCC</canonical>
            <polymorphic>CCTTCAAAGTGGAAGCATCCTTTTAGTGAAGAAAAAAAGCGCAGAGAAGGCAGTGTGCTTTGAAGGCGCATATCTCAAAAACTAGCAAAGCTGCAAAAAAGTTGTCAACTACAAAAAAGTTTCGAACGAATCTGAAAATTCTAAAATACTTATGTAAGACGTCGAAGTTAGCTGATCTTCTACTACAAAAGTGAAAATCATCTTCCGGCTATAGGACGACACATGGCTCATATTAAAGCAGCCAACTAGAATTTATTTTAAAAACTTCAAAATTCCTAAAACTTACCAAAAGTGTACTAGCCAATGGTCGCAACTCGGTCGCCTTCCAATTCTTATTGATCCAATCTGAGCACGACGCGGCGACCTCATTCCTCGAACTCGAGTCTCCAGCTACCGTAGCCGCAAACGAGTTCTGTTGAGTAACACAAATCGGTTTGAGCATTTGTGACATCACCCAGAATCGCCAGTCCTTTTTGGCACTATCCTTGACGTAGCGATCRAAGAAAGTTTCCAGGGAAGTTTTGGAGTCAATCTGAGTGGATGTCGATGGGGCGCTCGATTGGGGAAGATTAGTTTGAATCGATGAGATTCGCTGATTGAGCTTCTCAATTTTCGCCTTGGCTTCCTCGATTTTCTGCGATTTCTCCCATTTGTCATTTTGAAGGCGTCGGATGTGATCGGCGGCTTTCGCGAGGACTACCGCGTTGGTGGGTTTAACACCGCCCGAGTAGAGGTCAGGGATCTGGAATAATCGAAATCATTTGTCTTTTAAAAATCAAGCGGAATGGGGTCCTGGGCTACAGAAATCAGGGCCGCAGCCGGCCGCGTACATTTAGCAATTTGAAATTTGGTGTCCTAGAAATCCTAAATTCAAGAAAGTTAGCCCCCCGGCAGCTACATGAACCGAGAAAGCTAAATTTTATTATTCCAGTTCAATTTTCAGGTTGAAAAATGTCAATTTTTAGTTATAGCGATTTGAACTTTAGTGGCCTAGAAATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTGATCCAATCTGAGCAC</pcr_primer_p1>
		<pcr_primer_p2>CTCATCGATTCAAACTAATCTTC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TTATTGATCCAATCTGAGCACGACGCGGCGACCTCATTCCTCGAACTCGAGTCTCCAGCTACCGTAGCCGCAAACGAGTTCTGTTGAGTAACACAAATCGGTTTGAGCATTTGTGACATCACCCAGAATCGCCAGTCCTTTTTGGCACTATCCTTGACGTAGCGATCAAAGAAAGTTTCCAGGGAAGTTTTGGAGTCAATCTGAGTGGATGTCGATGGGGCGCTCGATTGGGGAAGATTAGTTTGAATCGATGAG</canonical_amplicon>
		<polymorphic_amplicon>TTATTGATCCAATCTGAGCACGACGCGGCGACCTCATTCCTCGAACTCGAGTCTCCAGCTACCGTAGCCGCAAACGAGTTCTGTTGAGTAACACAAATCGGTTTGAGCATTTGTGACATCACCCAGAATCGCCAGTCCTTTTTGGCACTATCCTTGACGTAGCGATCRAAGAAAGTTTCCAGGGAAGTTTTGGAGTCAATCTGAGTGGATGTCGATGGGGCGCTCGATTGGGGAAGATTAGTTTGAATCGATGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22150</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>44939</contig_pos>
        <strand>+</strand>
        <context>TCTGTTGAGT[A/G]ACACAAATCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCGAACTCGAGTCTCCAGCTACCGTAGCCGCAAACGAGTTCTGTTGAGT</left_flank>
        <right_flank>ACACAAATCGGTTTGAGCATTTGTGACATCACCCAGAATCGCCAGTCCTT</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTACACTAATCAAAAATCGAGTTTTAATTTTGTAGTTAACATCTTTTTTGTAACTCTGTTAGTTTTCGAGATATGCGCCTTCAAAGTGGAAGCATCCTTTTAGTGAAGAAAAAAAGCGCAGAGAAGGCAGTGTGCTTTGAAGGCGCATATCTCAAAAACTAGCAAAGCTGCAAAAAAGTTGTCAACTACAAAAAAGTTTCGAACGAATCTGAAAATTCTAAAATACTTATGTAAGACGTCGAAGTTAGCTGATCTTCTACTACAAAAGTGAAAATCATCTTCCGGCTATAGGACGACACATGGCTCATATTAAAGCAGCCAACTAGAATTTATTTTAAAAACTTCAAAATTCCTAAAACTTACCAAAAGTGTACTAGCCAATGGTCGCAACTCGGTCGCCTTCCAATTCTTATTGATCCAATCTGAGCACGACGCGGCGACCTCATTCCTCGAACTCGAGTCTCCAGCTACCGTAGCCGCAAACGAGTTCTGTTGAGTAACACAAATCGGTTTGAGCATTTGTGACATCACCCAGAATCGCCAGTCCTTTTTGGCACTATCCTTGACGTAGCGATCAAAGAAAGTTTCCAGGGAAGTTTTGGAGTCAATCTGAGTGGATGTCGATGGGGCGCTCGATTGGGGAAGATTAGTTTGAATCGATGAGATTCGCTGATTGAGCTTCTCAATTTTCGCCTTGGCTTCCTCGATTTTCTGCGATTTCTCCCATTTGTCATTTTGAAGGCGTCGGATGTGATCGGCGGCTTTCGCGAGGACTACCGCGTTGGTGGGTTTAACACCGCCCGAGTAGAGGTCAGGGATCTGGAATAATCGAAATCATTTGTCTTTTAAAAATCAAGCGGAATGGGGTCCTGGGCTACAGAAATCAGGGCCGCAGCCGGCCGCGTACATTTAGCAATTTGAAATTTGGTGTCCTAGAAATCCTAAATTCAAGAAAGTTAGCCCCCCGGCAGCTACATGAACCGAGAAAGCTAAATTTTA</canonical>
            <polymorphic>AGTACACTAATCAAAAATCGAGTTTTAATTTTGTAGTTAACATCTTTTTTGTAACTCTGTTAGTTTTCGAGATATGCGCCTTCAAAGTGGAAGCATCCTTTTAGTGAAGAAAAAAAGCGCAGAGAAGGCAGTGTGCTTTGAAGGCGCATATCTCAAAAACTAGCAAAGCTGCAAAAAAGTTGTCAACTACAAAAAAGTTTCGAACGAATCTGAAAATTCTAAAATACTTATGTAAGACGTCGAAGTTAGCTGATCTTCTACTACAAAAGTGAAAATCATCTTCCGGCTATAGGACGACACATGGCTCATATTAAAGCAGCCAACTAGAATTTATTTTAAAAACTTCAAAATTCCTAAAACTTACCAAAAGTGTACTAGCCAATGGTCGCAACTCGGTCGCCTTCCAATTCTTATTGATCCAATCTGAGCACGACGCGGCGACCTCATTCCTCGAACTCGAGTCTCCAGCTACCGTAGCCGCAAACGAGTTCTGTTGAGTRACACAAATCGGTTTGAGCATTTGTGACATCACCCAGAATCGCCAGTCCTTTTTGGCACTATCCTTGACGTAGCGATCAAAGAAAGTTTCCAGGGAAGTTTTGGAGTCAATCTGAGTGGATGTCGATGGGGCGCTCGATTGGGGAAGATTAGTTTGAATCGATGAGATTCGCTGATTGAGCTTCTCAATTTTCGCCTTGGCTTCCTCGATTTTCTGCGATTTCTCCCATTTGTCATTTTGAAGGCGTCGGATGTGATCGGCGGCTTTCGCGAGGACTACCGCGTTGGTGGGTTTAACACCGCCCGAGTAGAGGTCAGGGATCTGGAATAATCGAAATCATTTGTCTTTTAAAAATCAAGCGGAATGGGGTCCTGGGCTACAGAAATCAGGGCCGCAGCCGGCCGCGTACATTTAGCAATTTGAAATTTGGTGTCCTAGAAATCCTAAATTCAAGAAAGTTAGCCCCCCGGCAGCTACATGAACCGAGAAAGCTAAATTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGTGTACTAGCCAATGGTC</pcr_primer_p1>
		<pcr_primer_p2>CTCAGATTGACTCCAAAACTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAGTGTACTAGCCAATGGTCGCAACTCGGTCGCCTTCCAATTCTTATTGATCCAATCTGAGCACGACGCGGCGACCTCATTCCTCGAACTCGAGTCTCCAGCTACCGTAGCCGCAAACGAGTTCTGTTGAGTAACACAAATCGGTTTGAGCATTTGTGACATCACCCAGAATCGCCAGTCCTTTTTGGCACTATCCTTGACGTAGCGATCAAAGAAAGTTTCCAGGGAAGTTTTGGAGTCAATCTGAG</canonical_amplicon>
		<polymorphic_amplicon>AAAAGTGTACTAGCCAATGGTCGCAACTCGGTCGCCTTCCAATTCTTATTGATCCAATCTGAGCACGACGCGGCGACCTCATTCCTCGAACTCGAGTCTCCAGCTACCGTAGCCGCAAACGAGTTCTGTTGAGTRACACAAATCGGTTTGAGCATTTGTGACATCACCCAGAATCGCCAGTCCTTTTTGGCACTATCCTTGACGTAGCGATCAAAGAAAGTTTCCAGGGAAGTTTTGGAGTCAATCTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22151</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>117917</contig_pos>
        <strand>+</strand>
        <context>TGTACAATTT[C/T]CTACTGATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAATATTTTTTTGGCTTTTAGGAATTTTTTCTCATTTTTGTACAATTT</left_flank>
        <right_flank>CTACTGATTCTTTCGTTTTGATTTTCCAAAATTCATTTTGATTAGTTGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTTTCTAAGTGTCGCGGTTTCGAACTGACTGGTTTCGAAATGACTGGTTTCGAAGTGTCATGTAGTTTTGAAATGGCCAGTTTCTAAGTGTCGCGGTTTCGAACTGACTGGTTTCGAAATGACTGGTTTCGAAGTGTCATGTAGTTTTGAAATGACCGGTTTCGAAGTGTCGCGGTTTCGAACTGACTGGTTTCGAAATGACTGGTTTCGAAGTGTCAAGTAGTTTCGAAATGACCGGTTTCAAAGTGTCGCGGTTTCGAAGTGGCGTGGAGCCAAAAAATGCCAAAAATCCCTAAAAATTCCGAGAAATTTTGACTTTTCAATTCCGAGAAATTTTGACTTTTCAGAAGTTGTGGAACTCACAATCAGACGACTCAGAAACTCAAAAATTCCGAGAAATTCCAAAATTCGGAAATTGAGATTTTCATGGATGAATTTTCAGCGTTTTTCAATATTTTTTTGGCTTTTAGGAATTTTTTCTCATTTTTGTACAATTTCCTACTGATTCTTTCGTTTTGATTTTCCAAAATTCATTTTGATTAGTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAGGTTTCCTAGTTCAGGATTTTTAAAAACTTTAAAAAAATCCTTTTTCACTTATTTTGTTCTTCCCAGTTTTTCTTTTTCAATTCCAAGAAATTTATTTTTTTTACTTTTTTGACTAGATCCTACAAAGAAAAAAATGTCTCCCAATTTCCAAAAAAAAAAAAATAAATTAGATCTCCAACAAAACTAATGGAAAATGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGGTGGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTTGGGGAAATTCTTTTTTTTTCAGTTCCGCTGAAACCTAAAAGGATATCCATAAATAGACATTTTTCAAGAAAACGTTTTTTTTTTTGGGAA</canonical>
            <polymorphic>CAGTTTCTAAGTGTCGCGGTTTCGAACTGACTGGTTTCGAAATGACTGGTTTCGAAGTGTCATGTAGTTTTGAAATGGCCAGTTTCTAAGTGTCGCGGTTTCGAACTGACTGGTTTCGAAATGACTGGTTTCGAAGTGTCATGTAGTTTTGAAATGACCGGTTTCGAAGTGTCGCGGTTTCGAACTGACTGGTTTCGAAATGACTGGTTTCGAAGTGTCAAGTAGTTTCGAAATGACCGGTTTCAAAGTGTCGCGGTTTCGAAGTGGCGTGGAGCCAAAAAATGCCAAAAATCCCTAAAAATTCCGAGAAATTTTGACTTTTCAATTCCGAGAAATTTTGACTTTTCAGAAGTTGTGGAACTCACAATCAGACGACTCAGAAACTCAAAAATTCCGAGAAATTCCAAAATTCGGAAATTGAGATTTTCATGGATGAATTTTCAGCGTTTTTCAATATTTTTTTGGCTTTTAGGAATTTTTTCTCATTTTTGTACAATTTYCTACTGATTCTTTCGTTTTGATTTTCCAAAATTCATTTTGATTAGTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAGGTTTCCTAGTTCAGGATTTTTAAAAACTTTAAAAAAATCCTTTTTCACTTATTTTGTTCTTCCCAGTTTTTCTTTTTCAATTCCAAGAAATTTATTTTTTTTACTTTTTTGACTAGATCCTACAAAGAAAAAAATGTCTCCCAATTTCCAAAAAAAAAAAAATAAATTAGATCTCCAACAAAACTAATGGAAAATGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGGTGGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTTGGGGAAATTCTTTTTTTTTCAGTTCCGCTGAAACCTAAAAGGATATCCATAAATAGACATTTTTCAAGAAAACGTTTTTTTTTTTGGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTGTGGAACTCACAATCA</pcr_primer_p1>
		<pcr_primer_p2>CTGGCTTAAAAATAATCATGAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGTTGTGGAACTCACAATCAGACGACTCAGAAACTCAAAAATTCCGAGAAATTCCAAAATTCGGAAATTGAGATTTTCATGGATGAATTTTCAGCGTTTTTCAATATTTTTTTGGCTTTTAGGAATTTTTTCTCATTTTTGTACAATTTCCTACTGATTCTTTCGTTTTGATTTTCCAAAATTCATTTTGATTAGTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAG</canonical_amplicon>
		<polymorphic_amplicon>AAGTTGTGGAACTCACAATCAGACGACTCAGAAACTCAAAAATTCCGAGAAATTCCAAAATTCGGAAATTGAGATTTTCATGGATGAATTTTCAGCGTTTTTCAATATTTTTTTGGCTTTTAGGAATTTTTTCTCATTTTTGTACAATTTYCTACTGATTCTTTCGTTTTGATTTTCCAAAATTCATTTTGATTAGTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22152</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>117951</contig_pos>
        <strand>+</strand>
        <context>TTCCAAAATT[C/T]ATTTTGATTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATTTTTGTACAATTTCCTACTGATTCTTTCGTTTTGATTTTCCAAAATT</left_flank>
        <right_flank>ATTTTGATTAGTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGAAATGACTGGTTTCGAAGTGTCATGTAGTTTTGAAATGGCCAGTTTCTAAGTGTCGCGGTTTCGAACTGACTGGTTTCGAAATGACTGGTTTCGAAGTGTCATGTAGTTTTGAAATGACCGGTTTCGAAGTGTCGCGGTTTCGAACTGACTGGTTTCGAAATGACTGGTTTCGAAGTGTCAAGTAGTTTCGAAATGACCGGTTTCAAAGTGTCGCGGTTTCGAAGTGGCGTGGAGCCAAAAAATGCCAAAAATCCCTAAAAATTCCGAGAAATTTTGACTTTTCAATTCCGAGAAATTTTGACTTTTCAGAAGTTGTGGAACTCACAATCAGACGACTCAGAAACTCAAAAATTCCGAGAAATTCCAAAATTCGGAAATTGAGATTTTCATGGATGAATTTTCAGCGTTTTTCAATATTTTTTTGGCTTTTAGGAATTTTTTCTCATTTTTGTACAATTTCCTACTGATTCTTTCGTTTTGATTTTCCAAAATTCATTTTGATTAGTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAGGTTTCCTAGTTCAGGATTTTTAAAAACTTTAAAAAAATCCTTTTTCACTTATTTTGTTCTTCCCAGTTTTTCTTTTTCAATTCCAAGAAATTTATTTTTTTTACTTTTTTGACTAGATCCTACAAAGAAAAAAATGTCTCCCAATTTCCAAAAAAAAAAAAATAAATTAGATCTCCAACAAAACTAATGGAAAATGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGGTGGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTTGGGGAAATTCTTTTTTTTTCAGTTCCGCTGAAACCTAAAAGGATATCCATAAATAGACATTTTTCAAGAAAACGTTTTTTTTTTTGGGAAATTAGAAAATTCAGATTTTCATTCGAATTGAACA</canonical>
            <polymorphic>TTTCGAAATGACTGGTTTCGAAGTGTCATGTAGTTTTGAAATGGCCAGTTTCTAAGTGTCGCGGTTTCGAACTGACTGGTTTCGAAATGACTGGTTTCGAAGTGTCATGTAGTTTTGAAATGACCGGTTTCGAAGTGTCGCGGTTTCGAACTGACTGGTTTCGAAATGACTGGTTTCGAAGTGTCAAGTAGTTTCGAAATGACCGGTTTCAAAGTGTCGCGGTTTCGAAGTGGCGTGGAGCCAAAAAATGCCAAAAATCCCTAAAAATTCCGAGAAATTTTGACTTTTCAATTCCGAGAAATTTTGACTTTTCAGAAGTTGTGGAACTCACAATCAGACGACTCAGAAACTCAAAAATTCCGAGAAATTCCAAAATTCGGAAATTGAGATTTTCATGGATGAATTTTCAGCGTTTTTCAATATTTTTTTGGCTTTTAGGAATTTTTTCTCATTTTTGTACAATTTCCTACTGATTCTTTCGTTTTGATTTTCCAAAATTYATTTTGATTAGTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAGGTTTCCTAGTTCAGGATTTTTAAAAACTTTAAAAAAATCCTTTTTCACTTATTTTGTTCTTCCCAGTTTTTCTTTTTCAATTCCAAGAAATTTATTTTTTTTACTTTTTTGACTAGATCCTACAAAGAAAAAAATGTCTCCCAATTTCCAAAAAAAAAAAAATAAATTAGATCTCCAACAAAACTAATGGAAAATGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGGTGGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTTGGGGAAATTCTTTTTTTTTCAGTTCCGCTGAAACCTAAAAGGATATCCATAAATAGACATTTTTCAAGAAAACGTTTTTTTTTTTGGGAAATTAGAAAATTCAGATTTTCATTCGAATTGAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>265 229 137 92 56 56 38 28 27 24 20 10 10 8</canonical_bands>
                <polymorphic_bands>265 229 137 92 76 56 38 28 27 24 10 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTGTGGAACTCACAATCA</pcr_primer_p1>
		<pcr_primer_p2>CTGGCTTAAAAATAATCATGAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGTTGTGGAACTCACAATCAGACGACTCAGAAACTCAAAAATTCCGAGAAATTCCAAAATTCGGAAATTGAGATTTTCATGGATGAATTTTCAGCGTTTTTCAATATTTTTTTGGCTTTTAGGAATTTTTTCTCATTTTTGTACAATTTCCTACTGATTCTTTCGTTTTGATTTTCCAAAATTCATTTTGATTAGTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAG</canonical_amplicon>
		<polymorphic_amplicon>AAGTTGTGGAACTCACAATCAGACGACTCAGAAACTCAAAAATTCCGAGAAATTCCAAAATTCGGAAATTGAGATTTTCATGGATGAATTTTCAGCGTTTTTCAATATTTTTTTGGCTTTTAGGAATTTTTTCTCATTTTTGTACAATTTCCTACTGATTCTTTCGTTTTGATTTTCCAAAATTYATTTTGATTAGTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22153</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>117962</contig_pos>
        <strand>+</strand>
        <context>ATTTTGATTA[G/T]TTGGAATTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTTCCTACTGATTCTTTCGTTTTGATTTTCCAAAATTCATTTTGATTA</left_flank>
        <right_flank>TTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGTTTCGAAGTGTCATGTAGTTTTGAAATGGCCAGTTTCTAAGTGTCGCGGTTTCGAACTGACTGGTTTCGAAATGACTGGTTTCGAAGTGTCATGTAGTTTTGAAATGACCGGTTTCGAAGTGTCGCGGTTTCGAACTGACTGGTTTCGAAATGACTGGTTTCGAAGTGTCAAGTAGTTTCGAAATGACCGGTTTCAAAGTGTCGCGGTTTCGAAGTGGCGTGGAGCCAAAAAATGCCAAAAATCCCTAAAAATTCCGAGAAATTTTGACTTTTCAATTCCGAGAAATTTTGACTTTTCAGAAGTTGTGGAACTCACAATCAGACGACTCAGAAACTCAAAAATTCCGAGAAATTCCAAAATTCGGAAATTGAGATTTTCATGGATGAATTTTCAGCGTTTTTCAATATTTTTTTGGCTTTTAGGAATTTTTTCTCATTTTTGTACAATTTCCTACTGATTCTTTCGTTTTGATTTTCCAAAATTCATTTTGATTAGTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAGGTTTCCTAGTTCAGGATTTTTAAAAACTTTAAAAAAATCCTTTTTCACTTATTTTGTTCTTCCCAGTTTTTCTTTTTCAATTCCAAGAAATTTATTTTTTTTACTTTTTTGACTAGATCCTACAAAGAAAAAAATGTCTCCCAATTTCCAAAAAAAAAAAAATAAATTAGATCTCCAACAAAACTAATGGAAAATGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGGTGGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTTGGGGAAATTCTTTTTTTTTCAGTTCCGCTGAAACCTAAAAGGATATCCATAAATAGACATTTTTCAAGAAAACGTTTTTTTTTTTGGGAAATTAGAAAATTCAGATTTTCATTCGAATTGAACAACAGGAATAAT</canonical>
            <polymorphic>CTGGTTTCGAAGTGTCATGTAGTTTTGAAATGGCCAGTTTCTAAGTGTCGCGGTTTCGAACTGACTGGTTTCGAAATGACTGGTTTCGAAGTGTCATGTAGTTTTGAAATGACCGGTTTCGAAGTGTCGCGGTTTCGAACTGACTGGTTTCGAAATGACTGGTTTCGAAGTGTCAAGTAGTTTCGAAATGACCGGTTTCAAAGTGTCGCGGTTTCGAAGTGGCGTGGAGCCAAAAAATGCCAAAAATCCCTAAAAATTCCGAGAAATTTTGACTTTTCAATTCCGAGAAATTTTGACTTTTCAGAAGTTGTGGAACTCACAATCAGACGACTCAGAAACTCAAAAATTCCGAGAAATTCCAAAATTCGGAAATTGAGATTTTCATGGATGAATTTTCAGCGTTTTTCAATATTTTTTTGGCTTTTAGGAATTTTTTCTCATTTTTGTACAATTTCCTACTGATTCTTTCGTTTTGATTTTCCAAAATTCATTTTGATTAKTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAGGTTTCCTAGTTCAGGATTTTTAAAAACTTTAAAAAAATCCTTTTTCACTTATTTTGTTCTTCCCAGTTTTTCTTTTTCAATTCCAAGAAATTTATTTTTTTTACTTTTTTGACTAGATCCTACAAAGAAAAAAATGTCTCCCAATTTCCAAAAAAAAAAAAATAAATTAGATCTCCAACAAAACTAATGGAAAATGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGGTGGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTTGGGGAAATTCTTTTTTTTTCAGTTCCGCTGAAACCTAAAAGGATATCCATAAATAGACATTTTTCAAGAAAACGTTTTTTTTTTTGGGAAATTAGAAAATTCAGATTTTCATTCGAATTGAACAACAGGAATAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCACAATCAGACGACTCAG</pcr_primer_p1>
		<pcr_primer_p2>CTAGGAAACCTGGCTTAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACTCACAATCAGACGACTCAGAAACTCAAAAATTCCGAGAAATTCCAAAATTCGGAAATTGAGATTTTCATGGATGAATTTTCAGCGTTTTTCAATATTTTTTTGGCTTTTAGGAATTTTTTCTCATTTTTGTACAATTTCCTACTGATTCTTTCGTTTTGATTTTCCAAAATTCATTTTGATTAGTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAGGTTTCCTAG</canonical_amplicon>
		<polymorphic_amplicon>ACTCACAATCAGACGACTCAGAAACTCAAAAATTCCGAGAAATTCCAAAATTCGGAAATTGAGATTTTCATGGATGAATTTTCAGCGTTTTTCAATATTTTTTTGGCTTTTAGGAATTTTTTCTCATTTTTGTACAATTTCCTACTGATTCTTTCGTTTTGATTTTCCAAAATTCATTTTGATTAKTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAGGTTTCCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22154</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>118026</contig_pos>
        <strand>+</strand>
        <context>GTTTCCTAGT[G/T]CAGGATTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAGGTTTCCTAGT</left_flank>
        <right_flank>CAGGATTTTTAAAAACTTTAAAAAAATCCTTTTTCACTTATTTTGTTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGGTTTCGAAATGACTGGTTTCGAAGTGTCATGTAGTTTTGAAATGACCGGTTTCGAAGTGTCGCGGTTTCGAACTGACTGGTTTCGAAATGACTGGTTTCGAAGTGTCAAGTAGTTTCGAAATGACCGGTTTCAAAGTGTCGCGGTTTCGAAGTGGCGTGGAGCCAAAAAATGCCAAAAATCCCTAAAAATTCCGAGAAATTTTGACTTTTCAATTCCGAGAAATTTTGACTTTTCAGAAGTTGTGGAACTCACAATCAGACGACTCAGAAACTCAAAAATTCCGAGAAATTCCAAAATTCGGAAATTGAGATTTTCATGGATGAATTTTCAGCGTTTTTCAATATTTTTTTGGCTTTTAGGAATTTTTTCTCATTTTTGTACAATTTCCTACTGATTCTTTCGTTTTGATTTTCCAAAATTCATTTTGATTAGTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAGGTTTCCTAGTTCAGGATTTTTAAAAACTTTAAAAAAATCCTTTTTCACTTATTTTGTTCTTCCCAGTTTTTCTTTTTCAATTCCAAGAAATTTATTTTTTTTACTTTTTTGACTAGATCCTACAAAGAAAAAAATGTCTCCCAATTTCCAAAAAAAAAAAAATAAATTAGATCTCCAACAAAACTAATGGAAAATGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGGTGGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTTGGGGAAATTCTTTTTTTTTCAGTTCCGCTGAAACCTAAAAGGATATCCATAAATAGACATTTTTCAAGAAAACGTTTTTTTTTTTGGGAAATTAGAAAATTCAGATTTTCATTCGAATTGAACAACAGGAATAATCATGGAAAATGGTTTCAGAACTTTTCAAAGATTCGTACACAGAATTCAGTAGACGTTGGAGATT</canonical>
            <polymorphic>CTGGTTTCGAAATGACTGGTTTCGAAGTGTCATGTAGTTTTGAAATGACCGGTTTCGAAGTGTCGCGGTTTCGAACTGACTGGTTTCGAAATGACTGGTTTCGAAGTGTCAAGTAGTTTCGAAATGACCGGTTTCAAAGTGTCGCGGTTTCGAAGTGGCGTGGAGCCAAAAAATGCCAAAAATCCCTAAAAATTCCGAGAAATTTTGACTTTTCAATTCCGAGAAATTTTGACTTTTCAGAAGTTGTGGAACTCACAATCAGACGACTCAGAAACTCAAAAATTCCGAGAAATTCCAAAATTCGGAAATTGAGATTTTCATGGATGAATTTTCAGCGTTTTTCAATATTTTTTTGGCTTTTAGGAATTTTTTCTCATTTTTGTACAATTTCCTACTGATTCTTTCGTTTTGATTTTCCAAAATTCATTTTGATTAGTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAGGTTTCCTAGTKCAGGATTTTTAAAAACTTTAAAAAAATCCTTTTTCACTTATTTTGTTCTTCCCAGTTTTTCTTTTTCAATTCCAAGAAATTTATTTTTTTTACTTTTTTGACTAGATCCTACAAAGAAAAAAATGTCTCCCAATTTCCAAAAAAAAAAAAATAAATTAGATCTCCAACAAAACTAATGGAAAATGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGGTGGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTTGGGGAAATTCTTTTTTTTTCAGTTCCGCTGAAACCTAAAAGGATATCCATAAATAGACATTTTTCAAGAAAACGTTTTTTTTTTTGGGAAATTAGAAAATTCAGATTTTCATTCGAATTGAACAACAGGAATAATCATGGAAAATGGTTTCAGAACTTTTCAAAGATTCGTACACAGAATTCAGTAGACGTTGGAGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>470 365 134 31</canonical_bands>
                <polymorphic_bands>470 396 134</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACTGATTCTTTCGTTTTGATTT</pcr_primer_p1>
		<pcr_primer_p2>GGAAATTGGGAGACATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TACTGATTCTTTCGTTTTGATTTTCCAAAATTCATTTTGATTAGTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAGGTTTCCTAGTTCAGGATTTTTAAAAACTTTAAAAAAATCCTTTTTCACTTATTTTGTTCTTCCCAGTTTTTCTTTTTCAATTCCAAGAAATTTATTTTTTTTACTTTTTTGACTAGATCCTACAAAGAAAAAAATGTCTCCCAATTTCC</canonical_amplicon>
		<polymorphic_amplicon>TACTGATTCTTTCGTTTTGATTTTCCAAAATTCATTTTGATTAGTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAGGTTTCCTAGTKCAGGATTTTTAAAAACTTTAAAAAAATCCTTTTTCACTTATTTTGTTCTTCCCAGTTTTTCTTTTTCAATTCCAAGAAATTTATTTTTTTTACTTTTTTGACTAGATCCTACAAAGAAAAAAATGTCTCCCAATTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22157</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>118210</contig_pos>
        <strand>+</strand>
        <context>TAATGGAAAA[C/T]GGAACATTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCCAAAAAAAAAAAAATAAATTAGATCTCCAACAAAACTAATGGAAAA</left_flank>
        <right_flank>GGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTAAAAATTCCGAGAAATTTTGACTTTTCAATTCCGAGAAATTTTGACTTTTCAGAAGTTGTGGAACTCACAATCAGACGACTCAGAAACTCAAAAATTCCGAGAAATTCCAAAATTCGGAAATTGAGATTTTCATGGATGAATTTTCAGCGTTTTTCAATATTTTTTTGGCTTTTAGGAATTTTTTCTCATTTTTGTACAATTTCCTACTGATTCTTTCGTTTTGATTTTCCAAAATTCATTTTGATTAGTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAGGTTTCCTAGTTCAGGATTTTTAAAAACTTTAAAAAAATCCTTTTTCACTTATTTTGTTCTTCCCAGTTTTTCTTTTTCAATTCCAAGAAATTTATTTTTTTTACTTTTTTGACTAGATCCTACAAAGAAAAAAATGTCTCCCAATTTCCAAAAAAAAAAAAATAAATTAGATCTCCAACAAAACTAATGGAAAATGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGGTGGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTTGGGGAAATTCTTTTTTTTTCAGTTCCGCTGAAACCTAAAAGGATATCCATAAATAGACATTTTTCAAGAAAACGTTTTTTTTTTTGGGAAATTAGAAAATTCAGATTTTCATTCGAATTGAACAACAGGAATAATCATGGAAAATGGTTTCAGAACTTTTCAAAGATTCGTACACAGAATTCAGTAGACGTTGGAGATTCAGAAGACGTCAAAACGGAGAGAAGACAAACGGATAGAACACAGCAAAAGTGTGCCCCGCGGCGGCGTCGAAACTCTCATCAAATCTCTCCATTTGCACTAAAGGGAAAATGAGAAAAATAGGAGAAGAAGAAGAGAAAAGGACAAATTCATGGGAACAAAAACTCTCAGATTTAATGGGGCCG</canonical>
            <polymorphic>CCTAAAAATTCCGAGAAATTTTGACTTTTCAATTCCGAGAAATTTTGACTTTTCAGAAGTTGTGGAACTCACAATCAGACGACTCAGAAACTCAAAAATTCCGAGAAATTCCAAAATTCGGAAATTGAGATTTTCATGGATGAATTTTCAGCGTTTTTCAATATTTTTTTGGCTTTTAGGAATTTTTTCTCATTTTTGTACAATTTCCTACTGATTCTTTCGTTTTGATTTTCCAAAATTCATTTTGATTAGTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAGGTTTCCTAGTTCAGGATTTTTAAAAACTTTAAAAAAATCCTTTTTCACTTATTTTGTTCTTCCCAGTTTTTCTTTTTCAATTCCAAGAAATTTATTTTTTTTACTTTTTTGACTAGATCCTACAAAGAAAAAAATGTCTCCCAATTTCCAAAAAAAAAAAAATAAATTAGATCTCCAACAAAACTAATGGAAAAYGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGGTGGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTTGGGGAAATTCTTTTTTTTTCAGTTCCGCTGAAACCTAAAAGGATATCCATAAATAGACATTTTTCAAGAAAACGTTTTTTTTTTTGGGAAATTAGAAAATTCAGATTTTCATTCGAATTGAACAACAGGAATAATCATGGAAAATGGTTTCAGAACTTTTCAAAGATTCGTACACAGAATTCAGTAGACGTTGGAGATTCAGAAGACGTCAAAACGGAGAGAAGACAAACGGATAGAACACAGCAAAAGTGTGCCCCGCGGCGGCGTCGAAACTCTCATCAAATCTCTCCATTTGCACTAAAGGGAAAATGAGAAAAATAGGAGAAGAAGAAGAGAAAAGGACAAATTCATGGGAACAAAAACTCTCAGATTTAATGGGGCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTTTTCACTTATTTTGTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTATTCGTTTTCCCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTTTTTCACTTATTTTGTTCTTCCCAGTTTTTCTTTTTCAATTCCAAGAAATTTATTTTTTTTACTTTTTTGACTAGATCCTACAAAGAAAAAAATGTCTCCCAATTTCCAAAAAAAAAAAAATAAATTAGATCTCCAACAAAACTAATGGAAAATGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGGTGGGGAAAAAGGGGAAAACGAATAAA</canonical_amplicon>
		<polymorphic_amplicon>CCTTTTTCACTTATTTTGTTCTTCCCAGTTTTTCTTTTTCAATTCCAAGAAATTTATTTTTTTTACTTTTTTGACTAGATCCTACAAAGAAAAAAATGTCTCCCAATTTCCAAAAAAAAAAAAATAAATTAGATCTCCAACAAAACTAATGGAAAAYGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGGTGGGGAAAAAGGGGAAAACGAATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22158</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>118276</contig_pos>
        <strand>+</strand>
        <context>TTTGGAGAAG[G/T]KWGGGGAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAG</left_flank>
        <right_flank>GTGGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCACAATCAGACGACTCAGAAACTCAAAAATTCCGAGAAATTCCAAAATTCGGAAATTGAGATTTTCATGGATGAATTTTCAGCGTTTTTCAATATTTTTTTGGCTTTTAGGAATTTTTTCTCATTTTTGTACAATTTCCTACTGATTCTTTCGTTTTGATTTTCCAAAATTCATTTTGATTAGTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAGGTTTCCTAGTTCAGGATTTTTAAAAACTTTAAAAAAATCCTTTTTCACTTATTTTGTTCTTCCCAGTTTTTCTTTTTCAATTCCAAGAAATTTATTTTTTTTACTTTTTTGACTAGATCCTACAAAGAAAAAAATGTCTCCCAATTTCCAAAAAAAAAAAAATAAATTAGATCTCCAACAAAACTAATGGAAAATGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGGTGGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTTGGGGAAATTCTTTTTTTTTCAGTTCCGCTGAAACCTAAAAGGATATCCATAAATAGACATTTTTCAAGAAAACGTTTTTTTTTTTGGGAAATTAGAAAATTCAGATTTTCATTCGAATTGAACAACAGGAATAATCATGGAAAATGGTTTCAGAACTTTTCAAAGATTCGTACACAGAATTCAGTAGACGTTGGAGATTCAGAAGACGTCAAAACGGAGAGAAGACAAACGGATAGAACACAGCAAAAGTGTGCCCCGCGGCGGCGTCGAAACTCTCATCAAATCTCTCCATTTGCACTAAAGGGAAAATGAGAAAAATAGGAGAAGAAGAAGAGAAAAGGACAAATTCATGGGAACAAAAACTCTCAGATTTAATGGGGCCGAACCGAGAAATGAGCAGCCGAAAATGAGCTAAGGAGGCGGGCATTCTTTTGAAGACGTCATTATTT</canonical>
            <polymorphic>ACTCACAATCAGACGACTCAGAAACTCAAAAATTCCGAGAAATTCCAAAATTCGGAAATTGAGATTTTCATGGATGAATTTTCAGCGTTTTTCAATATTTTTTTGGCTTTTAGGAATTTTTTCTCATTTTTGTACAATTTCCTACTGATTCTTTCGTTTTGATTTTCCAAAATTCATTTTGATTAGTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAGGTTTCCTAGTTCAGGATTTTTAAAAACTTTAAAAAAATCCTTTTTCACTTATTTTGTTCTTCCCAGTTTTTCTTTTTCAATTCCAAGAAATTTATTTTTTTTACTTTTTTGACTAGATCCTACAAAGAAAAAAATGTCTCCCAATTTCCAAAAAAAAAAAAATAAATTAGATCTCCAACAAAACTAATGGAAAATGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGKGTGGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTTGGGGAAATTCTTTTTTTTTCAGTTCCGCTGAAACCTAAAAGGATATCCATAAATAGACATTTTTCAAGAAAACGTTTTTTTTTTTGGGAAATTAGAAAATTCAGATTTTCATTCGAATTGAACAACAGGAATAATCATGGAAAATGGTTTCAGAACTTTTCAAAGATTCGTACACAGAATTCAGTAGACGTTGGAGATTCAGAAGACGTCAAAACGGAGAGAAGACAAACGGATAGAACACAGCAAAAGTGTGCCCCGCGGCGGCGTCGAAACTCTCATCAAATCTCTCCATTTGCACTAAAGGGAAAATGAGAAAAATAGGAGAAGAAGAAGAGAAAAGGACAAATTCATGGGAACAAAAACTCTCAGATTTAATGGGGCCGAACCGAGAAATGAGCAGCCGAAAATGAGCTAAGGAGGCGGGCATTCTTTTGAAGACGTCATTATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTAGATCTCCAACAAAACTAATG</pcr_primer_p1>
		<pcr_primer_p2>GAATTTTCTAATTTCCCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTAGATCTCCAACAAAACTAATGGAAAATGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGGTGGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTTGGGGAAATTCTTTTTTTTTCAGTTCCGCTGAAACCTAAAAGGATATCCATAAATAGACATTTTTCAAGAAAACGTTTTTTTTTTTGGGAAATTAGAAAATTC</canonical_amplicon>
		<polymorphic_amplicon>AATTAGATCTCCAACAAAACTAATGGAAAATGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGKGTGGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTTGGGGAAATTCTTTTTTTTTCAGTTCCGCTGAAACCTAAAAGGATATCCATAAATAGACATTTTTCAAGAAAACGTTTTTTTTTTTGGGAAATTAGAAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22159</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>118277</contig_pos>
        <strand>+</strand>
        <context>TTGGAGAAGK[G/T]WGGGGAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGG</left_flank>
        <right_flank>TGGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCACAATCAGACGACTCAGAAACTCAAAAATTCCGAGAAATTCCAAAATTCGGAAATTGAGATTTTCATGGATGAATTTTCAGCGTTTTTCAATATTTTTTTGGCTTTTAGGAATTTTTTCTCATTTTTGTACAATTTCCTACTGATTCTTTCGTTTTGATTTTCCAAAATTCATTTTGATTAGTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAGGTTTCCTAGTTCAGGATTTTTAAAAACTTTAAAAAAATCCTTTTTCACTTATTTTGTTCTTCCCAGTTTTTCTTTTTCAATTCCAAGAAATTTATTTTTTTTACTTTTTTGACTAGATCCTACAAAGAAAAAAATGTCTCCCAATTTCCAAAAAAAAAAAAATAAATTAGATCTCCAACAAAACTAATGGAAAATGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGGTGGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTTGGGGAAATTCTTTTTTTTTCAGTTCCGCTGAAACCTAAAAGGATATCCATAAATAGACATTTTTCAAGAAAACGTTTTTTTTTTTGGGAAATTAGAAAATTCAGATTTTCATTCGAATTGAACAACAGGAATAATCATGGAAAATGGTTTCAGAACTTTTCAAAGATTCGTACACAGAATTCAGTAGACGTTGGAGATTCAGAAGACGTCAAAACGGAGAGAAGACAAACGGATAGAACACAGCAAAAGTGTGCCCCGCGGCGGCGTCGAAACTCTCATCAAATCTCTCCATTTGCACTAAAGGGAAAATGAGAAAAATAGGAGAAGAAGAAGAGAAAAGGACAAATTCATGGGAACAAAAACTCTCAGATTTAATGGGGCCGAACCGAGAAATGAGCAGCCGAAAATGAGCTAAGGAGGCGGGCATTCTTTTGAAGACGTCATTATTTT</canonical>
            <polymorphic>CTCACAATCAGACGACTCAGAAACTCAAAAATTCCGAGAAATTCCAAAATTCGGAAATTGAGATTTTCATGGATGAATTTTCAGCGTTTTTCAATATTTTTTTGGCTTTTAGGAATTTTTTCTCATTTTTGTACAATTTCCTACTGATTCTTTCGTTTTGATTTTCCAAAATTCATTTTGATTAGTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAGGTTTCCTAGTTCAGGATTTTTAAAAACTTTAAAAAAATCCTTTTTCACTTATTTTGTTCTTCCCAGTTTTTCTTTTTCAATTCCAAGAAATTTATTTTTTTTACTTTTTTGACTAGATCCTACAAAGAAAAAAATGTCTCCCAATTTCCAAAAAAAAAAAAATAAATTAGATCTCCAACAAAACTAATGGAAAATGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGKTGGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTTGGGGAAATTCTTTTTTTTTCAGTTCCGCTGAAACCTAAAAGGATATCCATAAATAGACATTTTTCAAGAAAACGTTTTTTTTTTTGGGAAATTAGAAAATTCAGATTTTCATTCGAATTGAACAACAGGAATAATCATGGAAAATGGTTTCAGAACTTTTCAAAGATTCGTACACAGAATTCAGTAGACGTTGGAGATTCAGAAGACGTCAAAACGGAGAGAAGACAAACGGATAGAACACAGCAAAAGTGTGCCCCGCGGCGGCGTCGAAACTCTCATCAAATCTCTCCATTTGCACTAAAGGGAAAATGAGAAAAATAGGAGAAGAAGAAGAGAAAAGGACAAATTCATGGGAACAAAAACTCTCAGATTTAATGGGGCCGAACCGAGAAATGAGCAGCCGAAAATGAGCTAAGGAGGCGGGCATTCTTTTGAAGACGTCATTATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>281 222 217 153 66 44 11 4 2</canonical_bands>
                <polymorphic_bands>439 281 153 66 44 11 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTAGATCTCCAACAAAACTAATG</pcr_primer_p1>
		<pcr_primer_p2>GAATTTTCTAATTTCCCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTAGATCTCCAACAAAACTAATGGAAAATGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGGTGGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTTGGGGAAATTCTTTTTTTTTCAGTTCCGCTGAAACCTAAAAGGATATCCATAAATAGACATTTTTCAAGAAAACGTTTTTTTTTTTGGGAAATTAGAAAATTC</canonical_amplicon>
		<polymorphic_amplicon>AATTAGATCTCCAACAAAACTAATGGAAAATGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGKTGGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTTGGGGAAATTCTTTTTTTTTCAGTTCCGCTGAAACCTAAAAGGATATCCATAAATAGACATTTTTCAAGAAAACGTTTTTTTTTTTGGGAAATTAGAAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22160</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>118278</contig_pos>
        <strand>+</strand>
        <context>TGGAGAAGKK[A/T]GGGGAAAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGG</left_flank>
        <right_flank>GGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACAATCAGACGACTCAGAAACTCAAAAATTCCGAGAAATTCCAAAATTCGGAAATTGAGATTTTCATGGATGAATTTTCAGCGTTTTTCAATATTTTTTTGGCTTTTAGGAATTTTTTCTCATTTTTGTACAATTTCCTACTGATTCTTTCGTTTTGATTTTCCAAAATTCATTTTGATTAGTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAGGTTTCCTAGTTCAGGATTTTTAAAAACTTTAAAAAAATCCTTTTTCACTTATTTTGTTCTTCCCAGTTTTTCTTTTTCAATTCCAAGAAATTTATTTTTTTTACTTTTTTGACTAGATCCTACAAAGAAAAAAATGTCTCCCAATTTCCAAAAAAAAAAAAATAAATTAGATCTCCAACAAAACTAATGGAAAATGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGGTGGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTTGGGGAAATTCTTTTTTTTTCAGTTCCGCTGAAACCTAAAAGGATATCCATAAATAGACATTTTTCAAGAAAACGTTTTTTTTTTTGGGAAATTAGAAAATTCAGATTTTCATTCGAATTGAACAACAGGAATAATCATGGAAAATGGTTTCAGAACTTTTCAAAGATTCGTACACAGAATTCAGTAGACGTTGGAGATTCAGAAGACGTCAAAACGGAGAGAAGACAAACGGATAGAACACAGCAAAAGTGTGCCCCGCGGCGGCGTCGAAACTCTCATCAAATCTCTCCATTTGCACTAAAGGGAAAATGAGAAAAATAGGAGAAGAAGAAGAGAAAAGGACAAATTCATGGGAACAAAAACTCTCAGATTTAATGGGGCCGAACCGAGAAATGAGCAGCCGAAAATGAGCTAAGGAGGCGGGCATTCTTTTGAAGACGTCATTATTTTT</canonical>
            <polymorphic>TCACAATCAGACGACTCAGAAACTCAAAAATTCCGAGAAATTCCAAAATTCGGAAATTGAGATTTTCATGGATGAATTTTCAGCGTTTTTCAATATTTTTTTGGCTTTTAGGAATTTTTTCTCATTTTTGTACAATTTCCTACTGATTCTTTCGTTTTGATTTTCCAAAATTCATTTTGATTAGTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAGGTTTCCTAGTTCAGGATTTTTAAAAACTTTAAAAAAATCCTTTTTCACTTATTTTGTTCTTCCCAGTTTTTCTTTTTCAATTCCAAGAAATTTATTTTTTTTACTTTTTTGACTAGATCCTACAAAGAAAAAAATGTCTCCCAATTTCCAAAAAAAAAAAAATAAATTAGATCTCCAACAAAACTAATGGAAAATGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGGWGGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTTGGGGAAATTCTTTTTTTTTCAGTTCCGCTGAAACCTAAAAGGATATCCATAAATAGACATTTTTCAAGAAAACGTTTTTTTTTTTGGGAAATTAGAAAATTCAGATTTTCATTCGAATTGAACAACAGGAATAATCATGGAAAATGGTTTCAGAACTTTTCAAAGATTCGTACACAGAATTCAGTAGACGTTGGAGATTCAGAAGACGTCAAAACGGAGAGAAGACAAACGGATAGAACACAGCAAAAGTGTGCCCCGCGGCGGCGTCGAAACTCTCATCAAATCTCTCCATTTGCACTAAAGGGAAAATGAGAAAAATAGGAGAAGAAGAAGAGAAAAGGACAAATTCATGGGAACAAAAACTCTCAGATTTAATGGGGCCGAACCGAGAAATGAGCAGCCGAAAATGAGCTAAGGAGGCGGGCATTCTTTTGAAGACGTCATTATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>281 222 217 154 66 44 11 3 2</canonical_bands>
                <polymorphic_bands>439 281 154 66 44 11 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTAGATCTCCAACAAAACTAATG</pcr_primer_p1>
		<pcr_primer_p2>GAATTTTCTAATTTCCCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTAGATCTCCAACAAAACTAATGGAAAATGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGGTGGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTTGGGGAAATTCTTTTTTTTTCAGTTCCGCTGAAACCTAAAAGGATATCCATAAATAGACATTTTTCAAGAAAACGTTTTTTTTTTTGGGAAATTAGAAAATTC</canonical_amplicon>
		<polymorphic_amplicon>AATTAGATCTCCAACAAAACTAATGGAAAATGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGGWGGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTTGGGGAAATTCTTTTTTTTTCAGTTCCGCTGAAACCTAAAAGGATATCCATAAATAGACATTTTTCAAGAAAACGTTTTTTTTTTTGGGAAATTAGAAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22163</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>123794</contig_pos>
        <strand></strand>
        <context>TATTCAGAAT[T/A]TTAAGCAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTATTTCATTTCACAATTTTACCGTGCTTCTTGGATGAATTATTCAGAAT</left_flank>
        <right_flank>TTAAGCAGAAGAGCTCATTTTTGATTGTTAGAAAACACTAAATCATTTAT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGCTATTGTTCCTAATTGTTCCAAAATTTCAAAACCATCAGATAATTTCGAAGGATATTTTAAAGTCTTATTTAATATCACCGTAAATTCTTTAATTGGAAGCCACCCTCTACCTTCACAATATCTAAATTTCTGAAAAAGAGATTTCAGAAGTCTGCCAGCTATTAAAATATTTTTCAAAACATCTCCTACATTTTATTAGTTGACAATTGATATCTCTTATAAGAACAGCGCCAATCGAGCTCGAAGTGCAGTCGAAATTCGAAAATTTTGAAAAAAAATTATGATCTAGGATTTCAAATTTCCCCCGAAGTGTTCATTGTTCCTATCCTCTGTCCTTTCGTGTATTTTGTGTCAAACGTGTCAAATTGTTGTTCATATTTAAGGAATATAATCCAAAAAATCACCTGTTCTATCATTTCAACCCTCTCAAATCAACTTCCTTTTTATTTCATTTCACAATTTTACCGTGCTTCTTGGATGAATTATTCAGAATTTTAAGCAGAAGAGCTCATTTTTGATTGTTAGAAAACACTAAATCATTTATTTTGACCTAAAAAAGACCCAGAGAAACGAGGCGCGGAGCTATGACAAAAGCGCACACCTAACTTTGAGCTCAATTATCTCGGTTTCTGTGAGAGATATCAAAAATAGGTCAACTAATAAAATGTTTATCATGATACCACCCACATTTCGTTTGTTTGCCAATTTTTAATACCTTTTTTAGGAATCGAGATAATTGATCTCAAAGAAAACAGTCTTTCAGATGTTGACGTGCATCTTCGAAGACACCTTCCTCGAATCTTCCCGTTTCCTGGCCTACGCATTGCACACCCTAACCTCCATCGAAATCCCTTTGCACATATTCGGTGCTTATTTGATTATAACTAAAACTCCACGAATCATGAGAACTGCAAAGTACAGTATCCTGCAACTACACCTCGCTTGTACTGTCATGGATCTAACGATCACAAGTCTTTGGATTTTTTATGTATGG</canonical>
            <polymorphic>TTTTGCTATTGTTCCTAATTGTTCCAAAATTTCAAAACCATCAGATAATTTCGAAGGATATTTTAAAGTCTTATTTAATATCACCGTAAATTCTTTAATTGGAAGCCACCCTCTACCTTCACAATATCTAAATTTCTGAAAAAGAGATTTCAGAAGTCTGCCAGCTATTAAAATATTTTTCAAAACATCTCCTACATTTTATTAGTTGACAATTGATATCTCTTATAAGAACAGCGCCAATCGAGCTCGAAGTGCAGTCGAAATTCGAAAATTTTGAAAAAAAATTATGATCTAGGATTTCAAATTTCCCCCGAAGTGTTCATTGTTCCTATCCTCTGTCCTTTCGTGTATTTTGTGTCAAACGTGTCAAATTGTTGTTCATATTTAAGGAATATAATCCAAAAAATCACCTGTTCTATCATTTCAACCCTCTCAAATCAACTTCCTTTTTATTTCATTTCACAATTTTACCGTGCTTCTTGGATGAATTATTCAGAATWTTAAGCAGAAGAGCTCATTTTTGATTGTTAGAAAACACTAAATCATTTATTTTGACCTAAAAAAGACCCAGAGAAACGAGGCGCGGAGCTATGACAAAAGCGCACACCTAACTTTGAGCTCAATTATCTCGGTTTCTGTGAGAGATATCAAAAATAGGTCAACTAATAAAATGTTTATCATGATACCACCCACATTTCGTTTGTTTGCCAATTTTTAATACCTTTTTTAGGAATCGAGATAATTGATCTCAAAGAAAACAGTCTTTCAGATGTTGACGTGCATCTTCGAAGACACCTTCCTCGAATCTTCCCGTTTCCTGGCCTACGCATTGCACACCCTAACCTCCATCGAAATCCCTTTGCACATATTCGGTGCTTATTTGATTATAACTAAAACTCCACGAATCATGAGAACTGCAAAGTACAGTATCCTGCAACTACACCTCGCTTGTACTGTCATGGATCTAACGATCACAAGTCTTTGGATTTTTTATGTATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>504 194 131 61 42 33 27 8</canonical_bands>
                <polymorphic_bands>698 131 61 42 33 27 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>260 125 94 88 80 67 51 42 34 31 23 20 19 16 13 11 10 8 8</canonical_bands>
                <polymorphic_bands>260 135 94 88 80 67 51 42 34 31 23 20 19 16 13 11 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTTTTTATTTCATTTCACAAT</pcr_primer_p1>
		<pcr_primer_p2>AGATTCGAGGAAGGTGTCTT</pcr_primer_p2>
		<pcr_amplicon_size>365</pcr_amplicon_size>
		<canonical_amplicon>TCCTTTTTATTTCATTTCACAATTTTACCGTGCTTCTTGGATGAATTATTCAGAATTTTAAGCAGAAGAGCTCATTTTTGATTGTTAGAAAACACTAAATCATTTATTTTGACCTAAAAAAGACCCAGAGAAACGAGGCGCGGAGCTATGACAAAAGCGCACACCTAACTTTGAGCTCAATTATCTCGGTTTCTGTGAGAGATATCAAAAATAGGTCAACTAATAAAATGTTTATCATGATACCACCCACATTTCGTTTGTTTGCCAATTTTTAATACCTTTTTTAGGAATCGAGATAATTGATCTCAAAGAAAACAGTCTTTCAGATGTTGACGTGCATCTTCGAAGACACCTTCCTCGAATCT</canonical_amplicon>
		<polymorphic_amplicon>TCCTTTTTATTTCATTTCACAATTTTACCGTGCTTCTTGGATGAATTATTCAGAATWTTAAGCAGAAGAGCTCATTTTTGATTGTTAGAAAACACTAAATCATTTATTTTGACCTAAAAAAGACCCAGAGAAACGAGGCGCGGAGCTATGACAAAAGCGCACACCTAACTTTGAGCTCAATTATCTCGGTTTCTGTGAGAGATATCAAAAATAGGTCAACTAATAAAATGTTTATCATGATACCACCCACATTTCGTTTGTTTGCCAATTTTTAATACCTTTTTTAGGAATCGAGATAATTGATCTCAAAGAAAACAGTCTTTCAGATGTTGACGTGCATCTTCGAAGACACCTTCCTCGAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22164</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>123764</contig_pos>
        <strand></strand>
        <context>TCACAATTTT[A/C]CCGTGCTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATTTCAACCCTCTCAAATCAACTTCCTTTTTATTTCATTTCACAATTTT</left_flank>
        <right_flank>CCGTGCTTCTTGGATGAATTATTCAGAATTTTAAGCAGAAGAGCTCATTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCAAAAAAGTTTTCATCTAAAATTTAAAGTTTTGCTATTGTTCCTAATTGTTCCAAAATTTCAAAACCATCAGATAATTTCGAAGGATATTTTAAAGTCTTATTTAATATCACCGTAAATTCTTTAATTGGAAGCCACCCTCTACCTTCACAATATCTAAATTTCTGAAAAAGAGATTTCAGAAGTCTGCCAGCTATTAAAATATTTTTCAAAACATCTCCTACATTTTATTAGTTGACAATTGATATCTCTTATAAGAACAGCGCCAATCGAGCTCGAAGTGCAGTCGAAATTCGAAAATTTTGAAAAAAAATTATGATCTAGGATTTCAAATTTCCCCCGAAGTGTTCATTGTTCCTATCCTCTGTCCTTTCGTGTATTTTGTGTCAAACGTGTCAAATTGTTGTTCATATTTAAGGAATATAATCCAAAAAATCACCTGTTCTATCATTTCAACCCTCTCAAATCAACTTCCTTTTTATTTCATTTCACAATTTTACCGTGCTTCTTGGATGAATTATTCAGAATTTTAAGCAGAAGAGCTCATTTTTGATTGTTAGAAAACACTAAATCATTTATTTTGACCTAAAAAAGACCCAGAGAAACGAGGCGCGGAGCTATGACAAAAGCGCACACCTAACTTTGAGCTCAATTATCTCGGTTTCTGTGAGAGATATCAAAAATAGGTCAACTAATAAAATGTTTATCATGATACCACCCACATTTCGTTTGTTTGCCAATTTTTAATACCTTTTTTAGGAATCGAGATAATTGATCTCAAAGAAAACAGTCTTTCAGATGTTGACGTGCATCTTCGAAGACACCTTCCTCGAATCTTCCCGTTTCCTGGCCTACGCATTGCACACCCTAACCTCCATCGAAATCCCTTTGCACATATTCGGTGCTTATTTGATTATAACTAAAACTCCACGAATCATGAGAACTGCAAAGTACAGTATCCTGCAACTACACCTCGCTTGTACTGTCATGGATCTAACG</canonical>
            <polymorphic>GTCAAAAAAGTTTTCATCTAAAATTTAAAGTTTTGCTATTGTTCCTAATTGTTCCAAAATTTCAAAACCATCAGATAATTTCGAAGGATATTTTAAAGTCTTATTTAATATCACCGTAAATTCTTTAATTGGAAGCCACCCTCTACCTTCACAATATCTAAATTTCTGAAAAAGAGATTTCAGAAGTCTGCCAGCTATTAAAATATTTTTCAAAACATCTCCTACATTTTATTAGTTGACAATTGATATCTCTTATAAGAACAGCGCCAATCGAGCTCGAAGTGCAGTCGAAATTCGAAAATTTTGAAAAAAAATTATGATCTAGGATTTCAAATTTCCCCCGAAGTGTTCATTGTTCCTATCCTCTGTCCTTTCGTGTATTTTGTGTCAAACGTGTCAAATTGTTGTTCATATTTAAGGAATATAATCCAAAAAATCACCTGTTCTATCATTTCAACCCTCTCAAATCAACTTCCTTTTTATTTCATTTCACAATTTTMCCGTGCTTCTTGGATGAATTATTCAGAATTTTAAGCAGAAGAGCTCATTTTTGATTGTTAGAAAACACTAAATCATTTATTTTGACCTAAAAAAGACCCAGAGAAACGAGGCGCGGAGCTATGACAAAAGCGCACACCTAACTTTGAGCTCAATTATCTCGGTTTCTGTGAGAGATATCAAAAATAGGTCAACTAATAAAATGTTTATCATGATACCACCCACATTTCGTTTGTTTGCCAATTTTTAATACCTTTTTTAGGAATCGAGATAATTGATCTCAAAGAAAACAGTCTTTCAGATGTTGACGTGCATCTTCGAAGACACCTTCCTCGAATCTTCCCGTTTCCTGGCCTACGCATTGCACACCCTAACCTCCATCGAAATCCCTTTGCACATATTCGGTGCTTATTTGATTATAACTAAAACTCCACGAATCATGAGAACTGCAAAGTACAGTATCCTGCAACTACACCTCGCTTGTACTGTCATGGATCTAACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>387 288 166 115 29 15</canonical_bands>
                <polymorphic_bands>675 166 115 29 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGTGTTCATTGTTCCTATCC</pcr_primer_p1>
		<pcr_primer_p2>GTGTTTTCTAACAATCAAAAATGA</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>GAAGTGTTCATTGTTCCTATCCTCTGTCCTTTCGTGTATTTTGTGTCAAACGTGTCAAATTGTTGTTCATATTTAAGGAATATAATCCAAAAAATCACCTGTTCTATCATTTCAACCCTCTCAAATCAACTTCCTTTTTATTTCATTTCACAATTTTACCGTGCTTCTTGGATGAATTATTCAGAATTTTAAGCAGAAGAGCTCATTTTTGATTGTTAGAAAACAC</canonical_amplicon>
		<polymorphic_amplicon>GAAGTGTTCATTGTTCCTATCCTCTGTCCTTTCGTGTATTTTGTGTCAAACGTGTCAAATTGTTGTTCATATTTAAGGAATATAATCCAAAAAATCACCTGTTCTATCATTTCAACCCTCTCAAATCAACTTCCTTTTTATTTCATTTCACAATTTTMCCGTGCTTCTTGGATGAATTATTCAGAATTTTAAGCAGAAGAGCTCATTTTTGATTGTTAGAAAACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22165</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>123715</contig_pos>
        <strand></strand>
        <context>CTGTTCTATC[A/T]TTTCAACCCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTGTTGTTCATATTTAAGGAATATAATCCAAAAAATCACCTGTTCTATC</left_flank>
        <right_flank>TTTCAACCCTCTCAAATCAACTTCCTTTTTATTTCATTTCACAATTTTAC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGATGAAAGAGAGAAATGTCAAAATTTTGAGCATGATTTTTTAGTTTGTCAAAAAAGTTTTCATCTAAAATTTAAAGTTTTGCTATTGTTCCTAATTGTTCCAAAATTTCAAAACCATCAGATAATTTCGAAGGATATTTTAAAGTCTTATTTAATATCACCGTAAATTCTTTAATTGGAAGCCACCCTCTACCTTCACAATATCTAAATTTCTGAAAAAGAGATTTCAGAAGTCTGCCAGCTATTAAAATATTTTTCAAAACATCTCCTACATTTTATTAGTTGACAATTGATATCTCTTATAAGAACAGCGCCAATCGAGCTCGAAGTGCAGTCGAAATTCGAAAATTTTGAAAAAAAATTATGATCTAGGATTTCAAATTTCCCCCGAAGTGTTCATTGTTCCTATCCTCTGTCCTTTCGTGTATTTTGTGTCAAACGTGTCAAATTGTTGTTCATATTTAAGGAATATAATCCAAAAAATCACCTGTTCTATCATTTCAACCCTCTCAAATCAACTTCCTTTTTATTTCATTTCACAATTTTACCGTGCTTCTTGGATGAATTATTCAGAATTTTAAGCAGAAGAGCTCATTTTTGATTGTTAGAAAACACTAAATCATTTATTTTGACCTAAAAAAGACCCAGAGAAACGAGGCGCGGAGCTATGACAAAAGCGCACACCTAACTTTGAGCTCAATTATCTCGGTTTCTGTGAGAGATATCAAAAATAGGTCAACTAATAAAATGTTTATCATGATACCACCCACATTTCGTTTGTTTGCCAATTTTTAATACCTTTTTTAGGAATCGAGATAATTGATCTCAAAGAAAACAGTCTTTCAGATGTTGACGTGCATCTTCGAAGACACCTTCCTCGAATCTTCCCGTTTCCTGGCCTACGCATTGCACACCCTAACCTCCATCGAAATCCCTTTGCACATATTCGGTGCTTATTTGATTATAACTAAAACTCCACGAATCATGAGAACTGCAAA</canonical>
            <polymorphic>ACAGATGAAAGAGAGAAATGTCAAAATTTTGAGCATGATTTTTTAGTTTGTCAAAAAAGTTTTCATCTAAAATTTAAAGTTTTGCTATTGTTCCTAATTGTTCCAAAATTTCAAAACCATCAGATAATTTCGAAGGATATTTTAAAGTCTTATTTAATATCACCGTAAATTCTTTAATTGGAAGCCACCCTCTACCTTCACAATATCTAAATTTCTGAAAAAGAGATTTCAGAAGTCTGCCAGCTATTAAAATATTTTTCAAAACATCTCCTACATTTTATTAGTTGACAATTGATATCTCTTATAAGAACAGCGCCAATCGAGCTCGAAGTGCAGTCGAAATTCGAAAATTTTGAAAAAAAATTATGATCTAGGATTTCAAATTTCCCCCGAAGTGTTCATTGTTCCTATCCTCTGTCCTTTCGTGTATTTTGTGTCAAACGTGTCAAATTGTTGTTCATATTTAAGGAATATAATCCAAAAAATCACCTGTTCTATCWTTTCAACCCTCTCAAATCAACTTCCTTTTTATTTCATTTCACAATTTTACCGTGCTTCTTGGATGAATTATTCAGAATTTTAAGCAGAAGAGCTCATTTTTGATTGTTAGAAAACACTAAATCATTTATTTTGACCTAAAAAAGACCCAGAGAAACGAGGCGCGGAGCTATGACAAAAGCGCACACCTAACTTTGAGCTCAATTATCTCGGTTTCTGTGAGAGATATCAAAAATAGGTCAACTAATAAAATGTTTATCATGATACCACCCACATTTCGTTTGTTTGCCAATTTTTAATACCTTTTTTAGGAATCGAGATAATTGATCTCAAAGAAAACAGTCTTTCAGATGTTGACGTGCATCTTCGAAGACACCTTCCTCGAATCTTCCCGTTTCCTGGCCTACGCATTGCACACCCTAACCTCCATCGAAATCCCTTTGCACATATTCGGTGCTTATTTGATTATAACTAAAACTCCACGAATCATGAGAACTGCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTGTTCATTGTTCCTATCC</pcr_primer_p1>
		<pcr_primer_p2>GTGTTTTCTAACAATCAAAAATGA</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>GAAGTGTTCATTGTTCCTATCCTCTGTCCTTTCGTGTATTTTGTGTCAAACGTGTCAAATTGTTGTTCATATTTAAGGAATATAATCCAAAAAATCACCTGTTCTATCATTTCAACCCTCTCAAATCAACTTCCTTTTTATTTCATTTCACAATTTTACCGTGCTTCTTGGATGAATTATTCAGAATTTTAAGCAGAAGAGCTCATTTTTGATTGTTAGAAAACAC</canonical_amplicon>
		<polymorphic_amplicon>GAAGTGTTCATTGTTCCTATCCTCTGTCCTTTCGTGTATTTTGTGTCAAACGTGTCAAATTGTTGTTCATATTTAAGGAATATAATCCAAAAAATCACCTGTTCTATCWTTTCAACCCTCTCAAATCAACTTCCTTTTTATTTCATTTCACAATTTTACCGTGCTTCTTGGATGAATTATTCAGAATTTTAAGCAGAAGAGCTCATTTTTGATTGTTAGAAAACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22166</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>123681</contig_pos>
        <strand></strand>
        <context>GTTCATATTT[A/G]AGGAATATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTCCTTTCGTGTATTTTGTGTCAAACGTGTCAAATTGTTGTTCATATTT</left_flank>
        <right_flank>AGGAATATAATCCAAAAAATCACCTGTTCTATCATTTCAACCCTCTCAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGATTTTCAGAAAAGCAGCAAATCTGAAAAAAAACAGATGAAAGAGAGAAATGTCAAAATTTTGAGCATGATTTTTTAGTTTGTCAAAAAAGTTTTCATCTAAAATTTAAAGTTTTGCTATTGTTCCTAATTGTTCCAAAATTTCAAAACCATCAGATAATTTCGAAGGATATTTTAAAGTCTTATTTAATATCACCGTAAATTCTTTAATTGGAAGCCACCCTCTACCTTCACAATATCTAAATTTCTGAAAAAGAGATTTCAGAAGTCTGCCAGCTATTAAAATATTTTTCAAAACATCTCCTACATTTTATTAGTTGACAATTGATATCTCTTATAAGAACAGCGCCAATCGAGCTCGAAGTGCAGTCGAAATTCGAAAATTTTGAAAAAAAATTATGATCTAGGATTTCAAATTTCCCCCGAAGTGTTCATTGTTCCTATCCTCTGTCCTTTCGTGTATTTTGTGTCAAACGTGTCAAATTGTTGTTCATATTTAAGGAATATAATCCAAAAAATCACCTGTTCTATCATTTCAACCCTCTCAAATCAACTTCCTTTTTATTTCATTTCACAATTTTACCGTGCTTCTTGGATGAATTATTCAGAATTTTAAGCAGAAGAGCTCATTTTTGATTGTTAGAAAACACTAAATCATTTATTTTGACCTAAAAAAGACCCAGAGAAACGAGGCGCGGAGCTATGACAAAAGCGCACACCTAACTTTGAGCTCAATTATCTCGGTTTCTGTGAGAGATATCAAAAATAGGTCAACTAATAAAATGTTTATCATGATACCACCCACATTTCGTTTGTTTGCCAATTTTTAATACCTTTTTTAGGAATCGAGATAATTGATCTCAAAGAAAACAGTCTTTCAGATGTTGACGTGCATCTTCGAAGACACCTTCCTCGAATCTTCCCGTTTCCTGGCCTACGCATTGCACACCCTAACCTCCATCGAAATCCCTTTGCACATATTCGGTGCTTATTTGATTA</canonical>
            <polymorphic>AGGATTTTCAGAAAAGCAGCAAATCTGAAAAAAAACAGATGAAAGAGAGAAATGTCAAAATTTTGAGCATGATTTTTTAGTTTGTCAAAAAAGTTTTCATCTAAAATTTAAAGTTTTGCTATTGTTCCTAATTGTTCCAAAATTTCAAAACCATCAGATAATTTCGAAGGATATTTTAAAGTCTTATTTAATATCACCGTAAATTCTTTAATTGGAAGCCACCCTCTACCTTCACAATATCTAAATTTCTGAAAAAGAGATTTCAGAAGTCTGCCAGCTATTAAAATATTTTTCAAAACATCTCCTACATTTTATTAGTTGACAATTGATATCTCTTATAAGAACAGCGCCAATCGAGCTCGAAGTGCAGTCGAAATTCGAAAATTTTGAAAAAAAATTATGATCTAGGATTTCAAATTTCCCCCGAAGTGTTCATTGTTCCTATCCTCTGTCCTTTCGTGTATTTTGTGTCAAACGTGTCAAATTGTTGTTCATATTTRAGGAATATAATCCAAAAAATCACCTGTTCTATCATTTCAACCCTCTCAAATCAACTTCCTTTTTATTTCATTTCACAATTTTACCGTGCTTCTTGGATGAATTATTCAGAATTTTAAGCAGAAGAGCTCATTTTTGATTGTTAGAAAACACTAAATCATTTATTTTGACCTAAAAAAGACCCAGAGAAACGAGGCGCGGAGCTATGACAAAAGCGCACACCTAACTTTGAGCTCAATTATCTCGGTTTCTGTGAGAGATATCAAAAATAGGTCAACTAATAAAATGTTTATCATGATACCACCCACATTTCGTTTGTTTGCCAATTTTTAATACCTTTTTTAGGAATCGAGATAATTGATCTCAAAGAAAACAGTCTTTCAGATGTTGACGTGCATCTTCGAAGACACCTTCCTCGAATCTTCCCGTTTCCTGGCCTACGCATTGCACACCCTAACCTCCATCGAAATCCCTTTGCACATATTCGGTGCTTATTTGATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>217 214 172 116 108 73 68 20 12</canonical_bands>
                <polymorphic_bands>333 214 172 108 73 68 20 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGTGTTCATTGTTCCTATCC</pcr_primer_p1>
		<pcr_primer_p2>GTGTTTTCTAACAATCAAAAATGA</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>GAAGTGTTCATTGTTCCTATCCTCTGTCCTTTCGTGTATTTTGTGTCAAACGTGTCAAATTGTTGTTCATATTTAAGGAATATAATCCAAAAAATCACCTGTTCTATCATTTCAACCCTCTCAAATCAACTTCCTTTTTATTTCATTTCACAATTTTACCGTGCTTCTTGGATGAATTATTCAGAATTTTAAGCAGAAGAGCTCATTTTTGATTGTTAGAAAACAC</canonical_amplicon>
		<polymorphic_amplicon>GAAGTGTTCATTGTTCCTATCCTCTGTCCTTTCGTGTATTTTGTGTCAAACGTGTCAAATTGTTGTTCATATTTRAGGAATATAATCCAAAAAATCACCTGTTCTATCATTTCAACCCTCTCAAATCAACTTCCTTTTTATTTCATTTCACAATTTTACCGTGCTTCTTGGATGAATTATTCAGAATTTTAAGCAGAAGAGCTCATTTTTGATTGTTAGAAAACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22167</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>123639</contig_pos>
        <strand></strand>
        <context>TCTGTCCTTT[C/T]GTGTATTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGATTTCAAATTTCCCCCGAAGTGTTCATTGTTCCTATCCTCTGTCCTTT</left_flank>
        <right_flank>GTGTATTTTGTGTCAAACGTGTCAAATTGTTGTTCATATTTAAGGAATAT</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATAGGTTACGCGAAAATTTAAAGGTTTATTTTCAGACAAAGGATTTTCAGAAAAGCAGCAAATCTGAAAAAAAACAGATGAAAGAGAGAAATGTCAAAATTTTGAGCATGATTTTTTAGTTTGTCAAAAAAGTTTTCATCTAAAATTTAAAGTTTTGCTATTGTTCCTAATTGTTCCAAAATTTCAAAACCATCAGATAATTTCGAAGGATATTTTAAAGTCTTATTTAATATCACCGTAAATTCTTTAATTGGAAGCCACCCTCTACCTTCACAATATCTAAATTTCTGAAAAAGAGATTTCAGAAGTCTGCCAGCTATTAAAATATTTTTCAAAACATCTCCTACATTTTATTAGTTGACAATTGATATCTCTTATAAGAACAGCGCCAATCGAGCTCGAAGTGCAGTCGAAATTCGAAAATTTTGAAAAAAAATTATGATCTAGGATTTCAAATTTCCCCCGAAGTGTTCATTGTTCCTATCCTCTGTCCTTTCGTGTATTTTGTGTCAAACGTGTCAAATTGTTGTTCATATTTAAGGAATATAATCCAAAAAATCACCTGTTCTATCATTTCAACCCTCTCAAATCAACTTCCTTTTTATTTCATTTCACAATTTTACCGTGCTTCTTGGATGAATTATTCAGAATTTTAAGCAGAAGAGCTCATTTTTGATTGTTAGAAAACACTAAATCATTTATTTTGACCTAAAAAAGACCCAGAGAAACGAGGCGCGGAGCTATGACAAAAGCGCACACCTAACTTTGAGCTCAATTATCTCGGTTTCTGTGAGAGATATCAAAAATAGGTCAACTAATAAAATGTTTATCATGATACCACCCACATTTCGTTTGTTTGCCAATTTTTAATACCTTTTTTAGGAATCGAGATAATTGATCTCAAAGAAAACAGTCTTTCAGATGTTGACGTGCATCTTCGAAGACACCTTCCTCGAATCTTCCCGTTTCCTGGCCTACGCATTGCACACCCTAACCT</canonical>
            <polymorphic>AGAATAGGTTACGCGAAAATTTAAAGGTTTATTTTCAGACAAAGGATTTTCAGAAAAGCAGCAAATCTGAAAAAAAACAGATGAAAGAGAGAAATGTCAAAATTTTGAGCATGATTTTTTAGTTTGTCAAAAAAGTTTTCATCTAAAATTTAAAGTTTTGCTATTGTTCCTAATTGTTCCAAAATTTCAAAACCATCAGATAATTTCGAAGGATATTTTAAAGTCTTATTTAATATCACCGTAAATTCTTTAATTGGAAGCCACCCTCTACCTTCACAATATCTAAATTTCTGAAAAAGAGATTTCAGAAGTCTGCCAGCTATTAAAATATTTTTCAAAACATCTCCTACATTTTATTAGTTGACAATTGATATCTCTTATAAGAACAGCGCCAATCGAGCTCGAAGTGCAGTCGAAATTCGAAAATTTTGAAAAAAAATTATGATCTAGGATTTCAAATTTCCCCCGAAGTGTTCATTGTTCCTATCCTCTGTCCTTTYGTGTATTTTGTGTCAAACGTGTCAAATTGTTGTTCATATTTAAGGAATATAATCCAAAAAATCACCTGTTCTATCATTTCAACCCTCTCAAATCAACTTCCTTTTTATTTCATTTCACAATTTTACCGTGCTTCTTGGATGAATTATTCAGAATTTTAAGCAGAAGAGCTCATTTTTGATTGTTAGAAAACACTAAATCATTTATTTTGACCTAAAAAAGACCCAGAGAAACGAGGCGCGGAGCTATGACAAAAGCGCACACCTAACTTTGAGCTCAATTATCTCGGTTTCTGTGAGAGATATCAAAAATAGGTCAACTAATAAAATGTTTATCATGATACCACCCACATTTCGTTTGTTTGCCAATTTTTAATACCTTTTTTAGGAATCGAGATAATTGATCTCAAAGAAAACAGTCTTTCAGATGTTGACGTGCATCTTCGAAGACACCTTCCTCGAATCTTCCCGTTTCCTGGCCTACGCATTGCACACCCTAACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCGAAGGATATTTTAAAGTCTTA</pcr_primer_p1>
		<pcr_primer_p2>TTGATTTGAGAGGGTTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>393</pcr_amplicon_size>
		<canonical_amplicon>TTTCGAAGGATATTTTAAAGTCTTATTTAATATCACCGTAAATTCTTTAATTGGAAGCCACCCTCTACCTTCACAATATCTAAATTTCTGAAAAAGAGATTTCAGAAGTCTGCCAGCTATTAAAATATTTTTCAAAACATCTCCTACATTTTATTAGTTGACAATTGATATCTCTTATAAGAACAGCGCCAATCGAGCTCGAAGTGCAGTCGAAATTCGAAAATTTTGAAAAAAAATTATGATCTAGGATTTCAAATTTCCCCCGAAGTGTTCATTGTTCCTATCCTCTGTCCTTTCGTGTATTTTGTGTCAAACGTGTCAAATTGTTGTTCATATTTAAGGAATATAATCCAAAAAATCACCTGTTCTATCATTTCAACCCTCTCAAATCAA</canonical_amplicon>
		<polymorphic_amplicon>TTTCGAAGGATATTTTAAAGTCTTATTTAATATCACCGTAAATTCTTTAATTGGAAGCCACCCTCTACCTTCACAATATCTAAATTTCTGAAAAAGAGATTTCAGAAGTCTGCCAGCTATTAAAATATTTTTCAAAACATCTCCTACATTTTATTAGTTGACAATTGATATCTCTTATAAGAACAGCGCCAATCGAGCTCGAAGTGCAGTCGAAATTCGAAAATTTTGAAAAAAAATTATGATCTAGGATTTCAAATTTCCCCCGAAGTGTTCATTGTTCCTATCCTCTGTCCTTTYGTGTATTTTGTGTCAAACGTGTCAAATTGTTGTTCATATTTAAGGAATATAATCCAAAAAATCACCTGTTCTATCATTTCAACCCTCTCAAATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22168</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>145646</contig_pos>
        <strand>+</strand>
        <context>GGAATTTGAG[A/G]RGAAACGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAAATAAGTAGAAATTGAAAATATGTAAAGTAGGAAAGAGGAATTTGAG</left_flank>
        <right_flank>AGAAACGAATCTTTGGTTTTTCAGGAAAATGTTCAAAATACAGACAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAACTCGCTTCAGAATCAATATTTTCAAAATTAAAAAACAGAATTAGGTTCGTCACAACTAGTGTTTTCCAAGCATATGCAACATGGCCTAGTTTTTTTATAATTTGGGTTTCTAGGCCACCAAACTAAAATGGGTGTAACTCGCTTCAAAGTCATGATTTCTGAAACTTAAAAAATGGGTTAGGTTCGCCAAAACCTGTGCTCTTCAATCATATAAGACATGGCCTAGGTTCTGCAAAATTTGGGTTTCTAGGCCACCAACTTCAAGCAGCAATCACTCGCTTCAAAATCATTATTTCGACAATCTGAAAATTGGTTCATATATGTCACAATTCGTGATTTCCAACCATCAAATAAACACTTTATATTTCAATTTGAAAATTTCAAAAATCACATAGAGAAAACATAATATCACAAGAAAAAGTACATAGCACCATACATGACAACATAAATAAGTAGAAATTGAAAATATGTAAAGTAGGAAAGAGGAATTTGAGAAGAAACGAATCTTTGGTTTTTCAGGAAAATGTTCAAAATACAGACAAAAAAGATTTTTGCAGGAAAAAAAGAGAAATTTTGGTAAAAATTGATAAAAAAATCTAAAAATCAAGAATTTCTACTACTATACATTTGATGGTTGCGTTGTTTCATTGTTTTGAGATGATGGGAGCTCATCGAGCGAGTCGTTCAGTGGATTGGAAAATGATTGGAACCTGCAAATTTCGATTTTTTGGAAATTTTTTTTCACATTTTCTGATTAGAGATTGAAATTGATTAGAATTCGGCCATTTTTTCGGTTACAATCAAAATTTTTTAAAAAAAATTCTTGAAAAGATCTAATTTTTAATTTTCGAAAAACAGTGATGGCCTAGAAACCCGAATTTTGTAAAAACTAGATCATGTTGCATGTGGTTGGAAAGCACAGGTTGTGGCGAATCTAACCCAGCTGTCAAATTTCAAATATAATGATTCTGAAGCGAGTTATACCCAATTTGATG</canonical>
            <polymorphic>TATAACTCGCTTCAGAATCAATATTTTCAAAATTAAAAAACAGAATTAGGTTCGTCACAACTAGTGTTTTCCAAGCATATGCAACATGGCCTAGTTTTTTTATAATTTGGGTTTCTAGGCCACCAAACTAAAATGGGTGTAACTCGCTTCAAAGTCATGATTTCTGAAACTTAAAAAATGGGTTAGGTTCGCCAAAACCTGTGCTCTTCAATCATATAAGACATGGCCTAGGTTCTGCAAAATTTGGGTTTCTAGGCCACCAACTTCAAGCAGCAATCACTCGCTTCAAAATCATTATTTCGACAATCTGAAAATTGGTTCATATATGTCACAATTCGTGATTTCCAACCATCAAATAAACACTTTATATTTCAATTTGAAAATTTCAAAAATCACATAGAGAAAACATAATATCACAAGAAAAAGTACATAGCACCATACATGACAACATAAATAAGTAGAAATTGAAAATATGTAAAGTAGGAAAGAGGAATTTGAGRAGAAACGAATCTTTGGTTTTTCAGGAAAATGTTCAAAATACAGACAAAAAAGATTTTTGCAGGAAAAAAAGAGAAATTTTGGTAAAAATTGATAAAAAAATCTAAAAATCAAGAATTTCTACTACTATACATTTGATGGTTGCGTTGTTTCATTGTTTTGAGATGATGGGAGCTCATCGAGCGAGTCGTTCAGTGGATTGGAAAATGATTGGAACCTGCAAATTTCGATTTTTTGGAAATTTTTTTTCACATTTTCTGATTAGAGATTGAAATTGATTAGAATTCGGCCATTTTTTCGGTTACAATCAAAATTTTTTAAAAAAAATTCTTGAAAAGATCTAATTTTTAATTTTCGAAAAACAGTGATGGCCTAGAAACCCGAATTTTGTAAAAACTAGATCATGTTGCATGTGGTTGGAAAGCACAGGTTGTGGCGAATCTAACCCAGCTGTCAAATTTCAAATATAATGATTCTGAAGCGAGTTATACCCAATTTGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGAAAAAGTACATAGCACCAT</pcr_primer_p1>
		<pcr_primer_p2>TCATCTCAAAACAATGAAACAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAGAAAAAGTACATAGCACCATACATGACAACATAAATAAGTAGAAATTGAAAATATGTAAAGTAGGAAAGAGGAATTTGAGAAGAAACGAATCTTTGGTTTTTCAGGAAAATGTTCAAAATACAGACAAAAAAGATTTTTGCAGGAAAAAAAGAGAAATTTTGGTAAAAATTGATAAAAAAATCTAAAAATCAAGAATTTCTACTACTATACATTTGATGGTTGCGTTGTTTCATTGTTTTGAGATGA</canonical_amplicon>
		<polymorphic_amplicon>CAAGAAAAAGTACATAGCACCATACATGACAACATAAATAAGTAGAAATTGAAAATATGTAAAGTAGGAAAGAGGAATTTGAGRAGAAACGAATCTTTGGTTTTTCAGGAAAATGTTCAAAATACAGACAAAAAAGATTTTTGCAGGAAAAAAAGAGAAATTTTGGTAAAAATTGATAAAAAAATCTAAAAATCAAGAATTTCTACTACTATACATTTGATGGTTGCGTTGTTTCATTGTTTTGAGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22169</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>145647</contig_pos>
        <strand>+</strand>
        <context>GAATTTGAGR[A/G]GAAACGAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAATAAGTAGAAATTGAAAATATGTAAAGTAGGAAAGAGGAATTTGAGA</left_flank>
        <right_flank>GAAACGAATCTTTGGTTTTTCAGGAAAATGTTCAAAATACAGACAAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAACTCGCTTCAGAATCAATATTTTCAAAATTAAAAAACAGAATTAGGTTCGTCACAACTAGTGTTTTCCAAGCATATGCAACATGGCCTAGTTTTTTTATAATTTGGGTTTCTAGGCCACCAAACTAAAATGGGTGTAACTCGCTTCAAAGTCATGATTTCTGAAACTTAAAAAATGGGTTAGGTTCGCCAAAACCTGTGCTCTTCAATCATATAAGACATGGCCTAGGTTCTGCAAAATTTGGGTTTCTAGGCCACCAACTTCAAGCAGCAATCACTCGCTTCAAAATCATTATTTCGACAATCTGAAAATTGGTTCATATATGTCACAATTCGTGATTTCCAACCATCAAATAAACACTTTATATTTCAATTTGAAAATTTCAAAAATCACATAGAGAAAACATAATATCACAAGAAAAAGTACATAGCACCATACATGACAACATAAATAAGTAGAAATTGAAAATATGTAAAGTAGGAAAGAGGAATTTGAGAAGAAACGAATCTTTGGTTTTTCAGGAAAATGTTCAAAATACAGACAAAAAAGATTTTTGCAGGAAAAAAAGAGAAATTTTGGTAAAAATTGATAAAAAAATCTAAAAATCAAGAATTTCTACTACTATACATTTGATGGTTGCGTTGTTTCATTGTTTTGAGATGATGGGAGCTCATCGAGCGAGTCGTTCAGTGGATTGGAAAATGATTGGAACCTGCAAATTTCGATTTTTTGGAAATTTTTTTTCACATTTTCTGATTAGAGATTGAAATTGATTAGAATTCGGCCATTTTTTCGGTTACAATCAAAATTTTTTAAAAAAAATTCTTGAAAAGATCTAATTTTTAATTTTCGAAAAACAGTGATGGCCTAGAAACCCGAATTTTGTAAAAACTAGATCATGTTGCATGTGGTTGGAAAGCACAGGTTGTGGCGAATCTAACCCAGCTGTCAAATTTCAAATATAATGATTCTGAAGCGAGTTATACCCAATTTGATGT</canonical>
            <polymorphic>ATAACTCGCTTCAGAATCAATATTTTCAAAATTAAAAAACAGAATTAGGTTCGTCACAACTAGTGTTTTCCAAGCATATGCAACATGGCCTAGTTTTTTTATAATTTGGGTTTCTAGGCCACCAAACTAAAATGGGTGTAACTCGCTTCAAAGTCATGATTTCTGAAACTTAAAAAATGGGTTAGGTTCGCCAAAACCTGTGCTCTTCAATCATATAAGACATGGCCTAGGTTCTGCAAAATTTGGGTTTCTAGGCCACCAACTTCAAGCAGCAATCACTCGCTTCAAAATCATTATTTCGACAATCTGAAAATTGGTTCATATATGTCACAATTCGTGATTTCCAACCATCAAATAAACACTTTATATTTCAATTTGAAAATTTCAAAAATCACATAGAGAAAACATAATATCACAAGAAAAAGTACATAGCACCATACATGACAACATAAATAAGTAGAAATTGAAAATATGTAAAGTAGGAAAGAGGAATTTGAGARGAAACGAATCTTTGGTTTTTCAGGAAAATGTTCAAAATACAGACAAAAAAGATTTTTGCAGGAAAAAAAGAGAAATTTTGGTAAAAATTGATAAAAAAATCTAAAAATCAAGAATTTCTACTACTATACATTTGATGGTTGCGTTGTTTCATTGTTTTGAGATGATGGGAGCTCATCGAGCGAGTCGTTCAGTGGATTGGAAAATGATTGGAACCTGCAAATTTCGATTTTTTGGAAATTTTTTTTCACATTTTCTGATTAGAGATTGAAATTGATTAGAATTCGGCCATTTTTTCGGTTACAATCAAAATTTTTTAAAAAAAATTCTTGAAAAGATCTAATTTTTAATTTTCGAAAAACAGTGATGGCCTAGAAACCCGAATTTTGTAAAAACTAGATCATGTTGCATGTGGTTGGAAAGCACAGGTTGTGGCGAATCTAACCCAGCTGTCAAATTTCAAATATAATGATTCTGAAGCGAGTTATACCCAATTTGATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGAAAAAGTACATAGCACCAT</pcr_primer_p1>
		<pcr_primer_p2>TCATCTCAAAACAATGAAACAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAGAAAAAGTACATAGCACCATACATGACAACATAAATAAGTAGAAATTGAAAATATGTAAAGTAGGAAAGAGGAATTTGAGAAGAAACGAATCTTTGGTTTTTCAGGAAAATGTTCAAAATACAGACAAAAAAGATTTTTGCAGGAAAAAAAGAGAAATTTTGGTAAAAATTGATAAAAAAATCTAAAAATCAAGAATTTCTACTACTATACATTTGATGGTTGCGTTGTTTCATTGTTTTGAGATGA</canonical_amplicon>
		<polymorphic_amplicon>CAAGAAAAAGTACATAGCACCATACATGACAACATAAATAAGTAGAAATTGAAAATATGTAAAGTAGGAAAGAGGAATTTGAGARGAAACGAATCTTTGGTTTTTCAGGAAAATGTTCAAAATACAGACAAAAAAGATTTTTGCAGGAAAAAAAGAGAAATTTTGGTAAAAATTGATAAAAAAATCTAAAAATCAAGAATTTCTACTACTATACATTTGATGGTTGCGTTGTTTCATTGTTTTGAGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22170</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>145872</contig_pos>
        <strand></strand>
        <context>CTGCAYATTT[C/T]GATTTTTTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCGAGCGAGTCGTTCAGTGGATTGGAAAATGATTGGAACCTGCAAATTT</left_flank>
        <right_flank>GATTTTTTGGAAATTTTTTTTCACATTTTCTGATTAGAGATTGAAATTGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTAGGTTCTGCAAAATTTGGGTTTCTAGGCCACCAACTTCAAGCAGCAATCACTCGCTTCAAAATCATTATTTCGACAATCTGAAAATTGGTTCATATATGTCACAATTCGTGATTTCCAACCATCAAATAAACACTTTATATTTCAATTTGAAAATTTCAAAAATCACATAGAGAAAACATAATATCACAAGAAAAAGTACATAGCACCATACATGACAACATAAATAAGTAGAAATTGAAAATATGTAAAGTAGGAAAGAGGAATTTGAGAAGAAACGAATCTTTGGTTTTTCAGGAAAATGTTCAAAATACAGACAAAAAAGATTTTTGCAGGAAAAAAAGAGAAATTTTGGTAAAAATTGATAAAAAAATCTAAAAATCAAGAATTTCTACTACTATACATTTGATGGTTGCGTTGTTTCATTGTTTTGAGATGATGGGAGCTCATCGAGCGAGTCGTTCAGTGGATTGGAAAATGATTGGAACCTGCAAATTTCGATTTTTTGGAAATTTTTTTTCACATTTTCTGATTAGAGATTGAAATTGATTAGAATTCGGCCATTTTTTCGGTTACAATCAAAATTTTTTAAAAAAAATTCTTGAAAAGATCTAATTTTTAATTTTCGAAAAACAGTGATGGCCTAGAAACCCGAATTTTGTAAAAACTAGATCATGTTGCATGTGGTTGGAAAGCACAGGTTGTGGCGAATCTAACCCAGCTGTCAAATTTCAAATATAATGATTCTGAAGCGAGTTATACCCAATTTGATGTTGGTGGCCTAGAAAACCAAAACTAGGCCGCATTCATAAATCGCTTCAAAATCAAGATTTTTGAAATCTGAAAACTAATTTGGAACCGTCAAATCCTGCTCTTCAAAACCATCCACGTCATGGCCTAATTTTTTCTGATTTTGGATTTCTAGGCCATCATTTTAAAATGGCCATGAAAAATTTTCGTTCAGTGGATTGGAAAATGATTAGAACCTGCAAAAATCGA</canonical>
            <polymorphic>CCTAGGTTCTGCAAAATTTGGGTTTCTAGGCCACCAACTTCAAGCAGCAATCACTCGCTTCAAAATCATTATTTCGACAATCTGAAAATTGGTTCATATATGTCACAATTCGTGATTTCCAACCATCAAATAAACACTTTATATTTCAATTTGAAAATTTCAAAAATCACATAGAGAAAACATAATATCACAAGAAAAAGTACATAGCACCATACATGACAACATAAATAAGTAGAAATTGAAAATATGTAAAGTAGGAAAGAGGAATTTGAGAAGAAACGAATCTTTGGTTTTTCAGGAAAATGTTCAAAATACAGACAAAAAAGATTTTTGCAGGAAAAAAAGAGAAATTTTGGTAAAAATTGATAAAAAAATCTAAAAATCAAGAATTTCTACTACTATACATTTGATGGTTGCGTTGTTTCATTGTTTTGAGATGATGGGAGCTCATCGAGCGAGTCGTTCAGTGGATTGGAAAATGATTGGAACCTGCAAATTTYGATTTTTTGGAAATTTTTTTTCACATTTTCTGATTAGAGATTGAAATTGATTAGAATTCGGCCATTTTTTCGGTTACAATCAAAATTTTTTAAAAAAAATTCTTGAAAAGATCTAATTTTTAATTTTCGAAAAACAGTGATGGCCTAGAAACCCGAATTTTGTAAAAACTAGATCATGTTGCATGTGGTTGGAAAGCACAGGTTGTGGCGAATCTAACCCAGCTGTCAAATTTCAAATATAATGATTCTGAAGCGAGTTATACCCAATTTGATGTTGGTGGCCTAGAAAACCAAAACTAGGCCGCATTCATAAATCGCTTCAAAATCAAGATTTTTGAAATCTGAAAACTAATTTGGAACCGTCAAATCCTGCTCTTCAAAACCATCCACGTCATGGCCTAATTTTTTCTGATTTTGGATTTCTAGGCCATCATTTTAAAATGGCCATGAAAAATTTTCGTTCAGTGGATTGGAAAATGATTAGAACCTGCAAAAATCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>377 370 128 75 48 2</canonical_bands>
                <polymorphic_bands>377 370 176 75 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAAATTTTGGTAAAAATTGATAA</pcr_primer_p1>
		<pcr_primer_p2>AAAATGGCCGAATTCTAATC</pcr_primer_p2>
		<pcr_amplicon_size>224</pcr_amplicon_size>
		<canonical_amplicon>GAGAAATTTTGGTAAAAATTGATAAAAAAATCTAAAAATCAAGAATTTCTACTACTATACATTTGATGGTTGCGTTGTTTCATTGTTTTGAGATGATGGGAGCTCATCGAGCGAGTCGTTCAGTGGATTGGAAAATGATTGGAACCTGCAAATTTCGATTTTTTGGAAATTTTTTTTCACATTTTCTGATTAGAGATTGAAATTGATTAGAATTCGGCCATTTT</canonical_amplicon>
		<polymorphic_amplicon>GAGAAATTTTGGTAAAAATTGATAAAAAAATCTAAAAATCAAGAATTTCTACTACTATACATTTGATGGTTGCGTTGTTTCATTGTTTTGAGATGATGGGAGCTCATCGAGCGAGTCGTTCAGTGGATTGGAAAATGATTGGAACCTGCAAATTTYGATTTTTTGGAAATTTTTTTTCACATTTTCTGATTAGAGATTGAAATTGATTAGAATTCGGCCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22171</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>145962</contig_pos>
        <strand>+</strand>
        <context>TCAAAATTTT[A/T]TAAAAAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTGAAATTGATTAGAATTCGGCCATTTTTTCGGTTACAATCAAAATTTT</left_flank>
        <right_flank>TAAAAAAAATTCTTGAAAAGATCTAATTTTTAATTTTCGAAAAACAGTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTCATATATGTCACAATTCGTGATTTCCAACCATCAAATAAACACTTTATATTTCAATTTGAAAATTTCAAAAATCACATAGAGAAAACATAATATCACAAGAAAAAGTACATAGCACCATACATGACAACATAAATAAGTAGAAATTGAAAATATGTAAAGTAGGAAAGAGGAATTTGAGAAGAAACGAATCTTTGGTTTTTCAGGAAAATGTTCAAAATACAGACAAAAAAGATTTTTGCAGGAAAAAAAGAGAAATTTTGGTAAAAATTGATAAAAAAATCTAAAAATCAAGAATTTCTACTACTATACATTTGATGGTTGCGTTGTTTCATTGTTTTGAGATGATGGGAGCTCATCGAGCGAGTCGTTCAGTGGATTGGAAAATGATTGGAACCTGCAAATTTCGATTTTTTGGAAATTTTTTTTCACATTTTCTGATTAGAGATTGAAATTGATTAGAATTCGGCCATTTTTTCGGTTACAATCAAAATTTTTTAAAAAAAATTCTTGAAAAGATCTAATTTTTAATTTTCGAAAAACAGTGATGGCCTAGAAACCCGAATTTTGTAAAAACTAGATCATGTTGCATGTGGTTGGAAAGCACAGGTTGTGGCGAATCTAACCCAGCTGTCAAATTTCAAATATAATGATTCTGAAGCGAGTTATACCCAATTTGATGTTGGTGGCCTAGAAAACCAAAACTAGGCCGCATTCATAAATCGCTTCAAAATCAAGATTTTTGAAATCTGAAAACTAATTTGGAACCGTCAAATCCTGCTCTTCAAAACCATCCACGTCATGGCCTAATTTTTTCTGATTTTGGATTTCTAGGCCATCATTTTAAAATGGCCATGAAAAATTTTCGTTCAGTGGATTGGAAAATGATTAGAACCTGCAAAAATCGATTTTTGGAAAATTTTTTTCACGATTTCTGATTAGAGGTTAAAATTGATTAGAATTCGGCCCGGTTAAAATTCAATTTTCAAAAAACAAAA</canonical>
            <polymorphic>GGTTCATATATGTCACAATTCGTGATTTCCAACCATCAAATAAACACTTTATATTTCAATTTGAAAATTTCAAAAATCACATAGAGAAAACATAATATCACAAGAAAAAGTACATAGCACCATACATGACAACATAAATAAGTAGAAATTGAAAATATGTAAAGTAGGAAAGAGGAATTTGAGAAGAAACGAATCTTTGGTTTTTCAGGAAAATGTTCAAAATACAGACAAAAAAGATTTTTGCAGGAAAAAAAGAGAAATTTTGGTAAAAATTGATAAAAAAATCTAAAAATCAAGAATTTCTACTACTATACATTTGATGGTTGCGTTGTTTCATTGTTTTGAGATGATGGGAGCTCATCGAGCGAGTCGTTCAGTGGATTGGAAAATGATTGGAACCTGCAAATTTCGATTTTTTGGAAATTTTTTTTCACATTTTCTGATTAGAGATTGAAATTGATTAGAATTCGGCCATTTTTTCGGTTACAATCAAAATTTTWTAAAAAAAATTCTTGAAAAGATCTAATTTTTAATTTTCGAAAAACAGTGATGGCCTAGAAACCCGAATTTTGTAAAAACTAGATCATGTTGCATGTGGTTGGAAAGCACAGGTTGTGGCGAATCTAACCCAGCTGTCAAATTTCAAATATAATGATTCTGAAGCGAGTTATACCCAATTTGATGTTGGTGGCCTAGAAAACCAAAACTAGGCCGCATTCATAAATCGCTTCAAAATCAAGATTTTTGAAATCTGAAAACTAATTTGGAACCGTCAAATCCTGCTCTTCAAAACCATCCACGTCATGGCCTAATTTTTTCTGATTTTGGATTTCTAGGCCATCATTTTAAAATGGCCATGAAAAATTTTCGTTCAGTGGATTGGAAAATGATTAGAACCTGCAAAAATCGATTTTTGGAAAATTTTTTTCACGATTTCTGATTAGAGGTTAAAATTGATTAGAATTCGGCCCGGTTAAAATTCAATTTTCAAAAAACAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 346 153</canonical_bands>
                <polymorphic_bands>847 153</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>500 316 102 30 26 26</canonical_bands>
                <polymorphic_bands>530 316 102 26 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTGGATTGGAAAATGATTG</pcr_primer_p1>
		<pcr_primer_p2>CGATTTTTGCAGGTTCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>534</pcr_amplicon_size>
		<canonical_amplicon>AGTGGATTGGAAAATGATTGGAACCTGCAAATTTCGATTTTTTGGAAATTTTTTTTCACATTTTCTGATTAGAGATTGAAATTGATTAGAATTCGGCCATTTTTTCGGTTACAATCAAAATTTTTTAAAAAAAATTCTTGAAAAGATCTAATTTTTAATTTTCGAAAAACAGTGATGGCCTAGAAACCCGAATTTTGTAAAAACTAGATCATGTTGCATGTGGTTGGAAAGCACAGGTTGTGGCGAATCTAACCCAGCTGTCAAATTTCAAATATAATGATTCTGAAGCGAGTTATACCCAATTTGATGTTGGTGGCCTAGAAAACCAAAACTAGGCCGCATTCATAAATCGCTTCAAAATCAAGATTTTTGAAATCTGAAAACTAATTTGGAACCGTCAAATCCTGCTCTTCAAAACCATCCACGTCATGGCCTAATTTTTTCTGATTTTGGATTTCTAGGCCATCATTTTAAAATGGCCATGAAAAATTTTCGTTCAGTGGATTGGAAAATGATTAGAACCTGCAAAAATCG</canonical_amplicon>
		<polymorphic_amplicon>AGTGGATTGGAAAATGATTGGAACCTGCAAATTTCGATTTTTTGGAAATTTTTTTTCACATTTTCTGATTAGAGATTGAAATTGATTAGAATTCGGCCATTTTTTCGGTTACAATCAAAATTTTWTAAAAAAAATTCTTGAAAAGATCTAATTTTTAATTTTCGAAAAACAGTGATGGCCTAGAAACCCGAATTTTGTAAAAACTAGATCATGTTGCATGTGGTTGGAAAGCACAGGTTGTGGCGAATCTAACCCAGCTGTCAAATTTCAAATATAATGATTCTGAAGCGAGTTATACCCAATTTGATGTTGGTGGCCTAGAAAACCAAAACTAGGCCGCATTCATAAATCGCTTCAAAATCAAGATTTTTGAAATCTGAAAACTAATTTGGAACCGTCAAATCCTGCTCTTCAAAACCATCCACGTCATGGCCTAATTTTTTCTGATTTTGGATTTCTAGGCCATCATTTTAAAATGGCCATGAAAAATTTTCGTTCAGTGGATTGGAAAATGATTAGAACCTGCAAAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22173</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>147870</contig_pos>
        <strand></strand>
        <context>CACTGGAAAA[T/A]TTTTTTTCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAA</left_flank>
        <right_flank>TTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAA</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTCTTAGATTTTTTTTTTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAAAATTGGAAATTTCGATTTTTCGCATTTTTTCAAAAATCGAATAATTCAAAAATAATTTTCCGATTTCTCAGAATTTTCCGGGAAAAAAAATCGAAAATTTAAAAATCAAAAATTCGGAGAAATTTTGAATTTTCCGGAAAATTCGAAAAAAAAATTAAATTTTTTGATATTTTAGAGCAAATTTTTTTCTTCAAAAATCTGAAATTTTGAAAAACCAAACTATAATTTTTTATTTCAAAAATTCACAAAAACAAAAAAACCTAATATCACGAGGAGAACCTGATTAGATAGCTAATCATGAGGAGGCTCATTAGTGTCAAAATCCAAAAAATAATAATATTTTCATTTTTCGAAATTTCCTCATTTTTGGCTAGCTAATTGCTCGGGATCTTTGTATGAAATAGTTATGAAATTTCGAAACAATTCAAA</canonical>
            <polymorphic>GATTCTTAGATTTTTTTTTTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAAWTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAAAATTGGAAATTTCGATTTTTCGCATTTTTTCAAAAATCGAATAATTCAAAAATAATTTTCCGATTTCTCAGAATTTTCCGGGAAAAAAAATCGAAAATTTAAAAATCAAAAATTCGGAGAAATTTTGAATTTTCCGGAAAATTCGAAAAAAAAATTAAATTTTTTGATATTTTAGAGCAAATTTTTTTCTTCAAAAATCTGAAATTTTGAAAAACCAAACTATAATTTTTTATTTCAAAAATTCACAAAAACAAAAAAACCTAATATCACGAGGAGAACCTGATTAGATAGCTAATCATGAGGAGGCTCATTAGTGTCAAAATCCAAAAAATAATAATATTTTCATTTTTCGAAATTTCCTCATTTTTGGCTAGCTAATTGCTCGGGATCTTTGTATGAAATAGTTATGAAATTTCGAAACAATTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>191 114 64 57 57 54 43 37 33 29 29 29 27 25 24 23 22 21 19 18 16 15 12 10 9 8 7 7</canonical_bands>
                <polymorphic_bands>191 114 70 64 57 57 54 37 33 29 29 29 25 24 23 22 21 19 18 16 15 12 10 9 8 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>144 114 40 36 35 34 34 33 29 29 27 25 24 23 23 22 22 21 21 18 16 16 15 15 14 13 13 12 11 11 11 10 9 8 8 8 8 8 7 7 7 7 7 5</canonical_bands>
                <polymorphic_bands>144 114 49 40 36 35 34 34 33 29 29 25 24 23 23 22 21 21 18 16 16 15 15 14 13 13 12 11 11 11 10 9 8 8 8 8 8 7 7 7 7 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATATGCACTGAAAAACTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTCGATAATTGGAAACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>AATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAA</canonical_amplicon>
		<polymorphic_amplicon>AATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAAWTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22174</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>147848</contig_pos>
        <strand></strand>
        <context>CAAAAWTCAA[T/A]TTTTTTTAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAA</left_flank>
        <right_flank>TTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTATATTCTTAGCTTCTTAGATTCTTAGATTTTTTTTTTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAAAATTGGAAATTTCGATTTTTCGCATTTTTTCAAAAATCGAATAATTCAAAAATAATTTTCCGATTTCTCAGAATTTTCCGGGAAAAAAAATCGAAAATTTAAAAATCAAAAATTCGGAGAAATTTTGAATTTTCCGGAAAATTCGAAAAAAAAATTAAATTTTTTGATATTTTAGAGCAAATTTTTTTCTTCAAAAATCTGAAATTTTGAAAAACCAAACTATAATTTTTTATTTCAAAAATTCACAAAAACAAAAAAACCTAATATCACGAGGAGAACCTGATTAGATAGCTAATCATGAGGAGGCTCATTAGTGTCAAAATCCAAAAAATAATAATATTTTCATTTTTCGAAATTTCCTCATTTTTGGCTAGCTAATTGCTCGGGATCTTTGTATGAAATAGTTA</canonical>
            <polymorphic>TTCTTATATTCTTAGCTTCTTAGATTCTTAGATTTTTTTTTTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAAWTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAAAATTGGAAATTTCGATTTTTCGCATTTTTTCAAAAATCGAATAATTCAAAAATAATTTTCCGATTTCTCAGAATTTTCCGGGAAAAAAAATCGAAAATTTAAAAATCAAAAATTCGGAGAAATTTTGAATTTTCCGGAAAATTCGAAAAAAAAATTAAATTTTTTGATATTTTAGAGCAAATTTTTTTCTTCAAAAATCTGAAATTTTGAAAAACCAAACTATAATTTTTTATTTCAAAAATTCACAAAAACAAAAAAACCTAATATCACGAGGAGAACCTGATTAGATAGCTAATCATGAGGAGGCTCATTAGTGTCAAAATCCAAAAAATAATAATATTTTCATTTTTCGAAATTTCCTCATTTTTGGCTAGCTAATTGCTCGGGATCTTTGTATGAAATAGTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>144 114 62 36 35 34 33 31 29 29 27 25 24 23 23 22 22 21 21 18 16 16 15 15 14 13 13 12 11 11 10 9 8 8 8 8 7 7 7 7 7 5</canonical_bands>
                <polymorphic_bands>144 114 62 36 36 35 34 33 31 29 29 27 25 24 23 23 22 21 21 18 16 16 15 15 13 13 12 11 11 10 9 8 8 8 8 7 7 7 7 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATATGCACTGAAAAACTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTCGATAATTGGAAACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>AATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAA</canonical_amplicon>
		<polymorphic_amplicon>AATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAAWTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22175</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>147843</contig_pos>
        <strand></strand>
        <context>ATTTTCAAAA[A/T]TCAAWTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAA</left_flank>
        <right_flank>TCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTTTTTTTTTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAAAATTGGAAATTTCGATTTTTCGCATTTTTTCAAAAATCGAATAATTCAAAAATAATTTTCCGATTTCTCAGAATTTTCCGGGAAAAAAAATCGAAAATTTAAAAATCAAAAATTCGGAGAAATTTTGAATTTTCCGGAAAATTCGAAAAAAAAATTAAATTTTTTGATATTTTAGAGCAAATTTTTTTCTTCAAAAATCTGAAATTTTGAAAAACCAAACTATAATTTTTTATTTCAAAAATTCACAAAAACAAAAAAACCTAATATCACGAGGAGAACCTGATTAGATAGCTAATCATGAGGAGGCTCATTAGTGTCAAAATCCAAAAAATAATAATATTTTCATTTTTCGAAATTTCCTCATTTTTGGCTAGCTAATTGCTCGGGATCTTTGTATGAAAT</canonical>
            <polymorphic>TTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTTTTTTTTTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAWTCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAAAATTGGAAATTTCGATTTTTCGCATTTTTTCAAAAATCGAATAATTCAAAAATAATTTTCCGATTTCTCAGAATTTTCCGGGAAAAAAAATCGAAAATTTAAAAATCAAAAATTCGGAGAAATTTTGAATTTTCCGGAAAATTCGAAAAAAAAATTAAATTTTTTGATATTTTAGAGCAAATTTTTTTCTTCAAAAATCTGAAATTTTGAAAAACCAAACTATAATTTTTTATTTCAAAAATTCACAAAAACAAAAAAACCTAATATCACGAGGAGAACCTGATTAGATAGCTAATCATGAGGAGGCTCATTAGTGTCAAAATCCAAAAAATAATAATATTTTCATTTTTCGAAATTTCCTCATTTTTGGCTAGCTAATTGCTCGGGATCTTTGTATGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATGCACTGAAAAACTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTCGATAATTGGAAACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>AATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAA</canonical_amplicon>
		<polymorphic_amplicon>AATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAWTCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22179</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>147679</contig_pos>
        <strand></strand>
        <context>CTKYAATTTT[C/T]AAAATTTTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTT</left_flank>
        <right_flank>AAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGTCTGAGTAGCGGTCCTGGAAGAATTGGGATTTTTAAGATTTTGAGATTTCGAGATTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTTTTTTTTTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAAAATTGGAAATTTCGATTTTTCGCATTTTTTCAAAAATCGAATAATTCAAAAATAATTTTCCGATTTCTCAGAATTTTCCGGGAAAAAAAATCGAAAATTTAAAAATCAAAAATTCGGAGAAATTTTGAATTTTCCGGAAAATTCGAAAAAAAAATTAAATTTTTTGATATTTTAGAGCAAATTTTTTTCTTCAAAAATCTGAAATTTTGAAAAACCAAACTATAATTTTTTATTTCAA</canonical>
            <polymorphic>CCGTCTGAGTAGCGGTCCTGGAAGAATTGGGATTTTTAAGATTTTGAGATTTCGAGATTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTTTTTTTTTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTYAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAAAATTGGAAATTTCGATTTTTCGCATTTTTTCAAAAATCGAATAATTCAAAAATAATTTTCCGATTTCTCAGAATTTTCCGGGAAAAAAAATCGAAAATTTAAAAATCAAAAATTCGGAGAAATTTTGAATTTTCCGGAAAATTCGAAAAAAAAATTAAATTTTTTGATATTTTAGAGCAAATTTTTTTCTTCAAAAATCTGAAATTTTGAAAAACCAAACTATAATTTTTTATTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAGCATTCCGAGTCTAATA</pcr_primer_p1>
		<pcr_primer_p2>TGGATTTTTGAATTATTTCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCA</canonical_amplicon>
		<polymorphic_amplicon>TTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTYAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22180</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>147671</contig_pos>
        <strand>+</strand>
        <context>CCCAAAGTCT[G/T]YAATTTTYAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCT</left_flank>
        <right_flank>GAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGCAAGCCGTCTGAGTAGCGGTCCTGGAAGAATTGGGATTTTTAAGATTTTGAGATTTCGAGATTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTTTTTTTTTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAAAATTGGAAATTTCGATTTTTCGCATTTTTTCAAAAATCGAATAATTCAAAAATAATTTTCCGATTTCTCAGAATTTTCCGGGAAAAAAAATCGAAAATTTAAAAATCAAAAATTCGGAGAAATTTTGAATTTTCCGGAAAATTCGAAAAAAAAATTAAATTTTTTGATATTTTAGAGCAAATTTTTTTCTTCAAAAATCTGAAATTTTGAAAAACCAAACTATAATTTTT</canonical>
            <polymorphic>AACGCAAGCCGTCTGAGTAGCGGTCCTGGAAGAATTGGGATTTTTAAGATTTTGAGATTTCGAGATTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTTTTTTTTTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTKGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAAAATTGGAAATTTCGATTTTTCGCATTTTTTCAAAAATCGAATAATTCAAAAATAATTTTCCGATTTCTCAGAATTTTCCGGGAAAAAAAATCGAAAATTTAAAAATCAAAAATTCGGAGAAATTTTGAATTTTCCGGAAAATTCGAAAAAAAAATTAAATTTTTTGATATTTTAGAGCAAATTTTTTTCTTCAAAAATCTGAAATTTTGAAAAACCAAACTATAATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAGCATTCCGAGTCTAATA</pcr_primer_p1>
		<pcr_primer_p2>TGGATTTTTGAATTATTTCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCA</canonical_amplicon>
		<polymorphic_amplicon>TTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTKGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22181</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>147638</contig_pos>
        <strand>+</strand>
        <context>TCAGATTTTT[C/T]GAATTTCATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTT</left_flank>
        <right_flank>GAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAATCGTGAAGACAGCCACGCTTCTCCATTGAACGCAAGCCGTCTGAGTAGCGGTCCTGGAAGAATTGGGATTTTTAAGATTTTGAGATTTCGAGATTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTTTTTTTTTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAAAATTGGAAATTTCGATTTTTCGCATTTTTTCAAAAATCGAATAATTCAAAAATAATTTTCCGATTTCTCAGAATTTTCCGGGAAAAAAAATCGAAAATTTAAAAATCAAAAATTCGGAGAAATTTTGAATTTTCCGGAAAATTCGAAAAAAAAATTAAATTTTTTGATATTTTAGAGCAAATTTTTTTCTTCAAAAA</canonical>
            <polymorphic>GGAAATCGTGAAGACAGCCACGCTTCTCCATTGAACGCAAGCCGTCTGAGTAGCGGTCCTGGAAGAATTGGGATTTTTAAGATTTTGAGATTTCGAGATTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTTTTTTTTTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTYGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAAAATTGGAAATTTCGATTTTTCGCATTTTTTCAAAAATCGAATAATTCAAAAATAATTTTCCGATTTCTCAGAATTTTCCGGGAAAAAAAATCGAAAATTTAAAAATCAAAAATTCGGAGAAATTTTGAATTTTCCGGAAAATTCGAAAAAAAAATTAAATTTTTTGATATTTTAGAGCAAATTTTTTTCTTCAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAGCATTCCGAGTCTAATA</pcr_primer_p1>
		<pcr_primer_p2>TGGATTTTTGAATTATTTCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCA</canonical_amplicon>
		<polymorphic_amplicon>TTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTYGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22182</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>147559</contig_pos>
        <strand></strand>
        <context>AAAACAATAT[T/A]AAAATTTGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATAT</left_flank>
        <right_flank>AAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATTCAGCAGATTCGACGGTGCGTAGGTGGATCGAGTGGTCGGGGAGCCGAGTTCCGACGGCGGTGGAATCATTTCGAGGAAATCGTGAAGACAGCCACGCTTCTCCATTGAACGCAAGCCGTCTGAGTAGCGGTCCTGGAAGAATTGGGATTTTTAAGATTTTGAGATTTCGAGATTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTTTTTTTTTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAAAATTGGAAATTTCGATTTTTCGCATTTTTTCAAAAATCGAATAATTCAAAAATAATTTTCCGATTTCTCAGAATTTTCCGGGAAAAAAAATCGAAAATTTAAAAATCAAAAATTCGGA</canonical>
            <polymorphic>AGATTCAGCAGATTCGACGGTGCGTAGGTGGATCGAGTGGTCGGGGAGCCGAGTTCCGACGGCGGTGGAATCATTTCGAGGAAATCGTGAAGACAGCCACGCTTCTCCATTGAACGCAAGCCGTCTGAGTAGCGGTCCTGGAAGAATTGGGATTTTTAAGATTTTGAGATTTCGAGATTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTTTTTTTTTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATWAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAAAATTGGAAATTTCGATTTTTCGCATTTTTTCAAAAATCGAATAATTCAAAAATAATTTTCCGATTTCTCAGAATTTTCCGGGAAAAAAAATCGAAAATTTAAAAATCAAAAATTCGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>343 233 156 141 45 32 19 19 12</canonical_bands>
                <polymorphic_bands>355 233 156 141 45 32 19 19</polymorphic_bands>
            </assay>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 460 37</canonical_bands>
                <polymorphic_bands>540 460</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAGCATTCCGAGTCTAATA</pcr_primer_p1>
		<pcr_primer_p2>TGGATTTTTGAATTATTTCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCA</canonical_amplicon>
		<polymorphic_amplicon>TTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATWAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22183</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>147537</contig_pos>
        <strand>+</strand>
        <context>GATTCTTAGA[C/T]TTTCGATTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGA</left_flank>
        <right_flank>TTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCAACAGGCACGCACCGACCCAGATTCAGCAGATTCGACGGTGCGTAGGTGGATCGAGTGGTCGGGGAGCCGAGTTCCGACGGCGGTGGAATCATTTCGAGGAAATCGTGAAGACAGCCACGCTTCTCCATTGAACGCAAGCCGTCTGAGTAGCGGTCCTGGAAGAATTGGGATTTTTAAGATTTTGAGATTTCGAGATTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTTTTTTTTTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAAAATTGGAAATTTCGATTTTTCGCATTTTTTCAAAAATCGAATAATTCAAAAATAATTTTCCGATTTCTCAGAATTTTCCGGGAAAAAAAATCGAAA</canonical>
            <polymorphic>TGCAACAGGCACGCACCGACCCAGATTCAGCAGATTCGACGGTGCGTAGGTGGATCGAGTGGTCGGGGAGCCGAGTTCCGACGGCGGTGGAATCATTTCGAGGAAATCGTGAAGACAGCCACGCTTCTCCATTGAACGCAAGCCGTCTGAGTAGCGGTCCTGGAAGAATTGGGATTTTTAAGATTTTGAGATTTCGAGATTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTTTTTTTTTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGAYTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAAAATTGGAAATTTCGATTTTTCGCATTTTTTCAAAAATCGAATAATTCAAAAATAATTTTCCGATTTCTCAGAATTTTCCGGGAAAAAAAATCGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTAAATATCCAGAAAATCACAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAATCTGAAATTTAACAAAACAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGAYTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22184</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>147521</contig_pos>
        <strand></strand>
        <context>GAGTCTAATA[T/C]TCCTGGATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATA</left_flank>
        <right_flank>TCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCAATTTCGTGACAATGCAACAGGCACGCACCGACCCAGATTCAGCAGATTCGACGGTGCGTAGGTGGATCGAGTGGTCGGGGAGCCGAGTTCCGACGGCGGTGGAATCATTTCGAGGAAATCGTGAAGACAGCCACGCTTCTCCATTGAACGCAAGCCGTCTGAGTAGCGGTCCTGGAAGAATTGGGATTTTTAAGATTTTGAGATTTCGAGATTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTTTTTTTTTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAAAATTGGAAATTTCGATTTTTCGCATTTTTTCAAAAATCGAATAATTCAAAAATAATTTTCCGATTTCTCAGAATTTTCCG</canonical>
            <polymorphic>AGCAATTTCGTGACAATGCAACAGGCACGCACCGACCCAGATTCAGCAGATTCGACGGTGCGTAGGTGGATCGAGTGGTCGGGGAGCCGAGTTCCGACGGCGGTGGAATCATTTCGAGGAAATCGTGAAGACAGCCACGCTTCTCCATTGAACGCAAGCCGTCTGAGTAGCGGTCCTGGAAGAATTGGGATTTTTAAGATTTTGAGATTTCGAGATTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTTTTTTTTTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATAYTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAAAATTGGAAATTTCGATTTTTCGCATTTTTTCAAAAATCGAATAATTCAAAAATAATTTTCCGATTTCTCAGAATTTTCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>498 465 37</canonical_bands>
                <polymorphic_bands>535 465</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTAAATATCCAGAAAATCACAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAATCTGAAATTTAACAAAACAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATAYTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22185</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>147444</contig_pos>
        <strand>+</strand>
        <context>AAGCAGTACA[C/T]TCACTATCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACA</left_flank>
        <right_flank>TCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTGAGACGTGCAAAATAACATGAGAAATTAAGAGAGTGCAGAGAGAAAAAAGACAATTAAAAAGAAGCTAAAAAAGAGCAATTTCGTGACAATGCAACAGGCACGCACCGACCCAGATTCAGCAGATTCGACGGTGCGTAGGTGGATCGAGTGGTCGGGGAGCCGAGTTCCGACGGCGGTGGAATCATTTCGAGGAAATCGTGAAGACAGCCACGCTTCTCCATTGAACGCAAGCCGTCTGAGTAGCGGTCCTGGAAGAATTGGGATTTTTAAGATTTTGAGATTTCGAGATTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTTTTTTTTTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAAAAT</canonical>
            <polymorphic>AGTGAGACGTGCAAAATAACATGAGAAATTAAGAGAGTGCAGAGAGAAAAAAGACAATTAAAAAGAAGCTAAAAAAGAGCAATTTCGTGACAATGCAACAGGCACGCACCGACCCAGATTCAGCAGATTCGACGGTGCGTAGGTGGATCGAGTGGTCGGGGAGCCGAGTTCCGACGGCGGTGGAATCATTTCGAGGAAATCGTGAAGACAGCCACGCTTCTCCATTGAACGCAAGCCGTCTGAGTAGCGGTCCTGGAAGAATTGGGATTTTTAAGATTTTGAGATTTCGAGATTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTTTTTTTTTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACAYTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>251 206 146 83 53 50 34 29 28 28 22 15 10 9 9 8 7 4 4 4</canonical_bands>
                <polymorphic_bands>251 206 146 83 53 50 38 29 28 28 22 15 10 9 9 8 7 4 4</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTAAATATCCAGAAAATCACAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAATCTGAAATTTAACAAAACAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACAYTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22188</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>168142</contig_pos>
        <strand>+</strand>
        <context>TCTTCAGCTT[C/T]CTCTATTGGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCATCTCGGTCGTCGTGATGGGCGGTGGCGCTGGCCTCGTCTTCAGCTT</left_flank>
        <right_flank>CTCTATTGGCATCTCCAAGACATCGGAGGCTCTCCAGTCCTGTTTGGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAGGAGCGATTTTCAAAATTTTCAATTTTCATCCCAAATCACTTCGATTTCCAAAATTTCTGGGAATTTGGAAATTTTACGTGATTCACAGAAATTGAATGTTGCAATTTCTGGGATTTTTCACAGAACTCGACGGTTCGAGTTCTGGGATTTTGGAAATTCACGTGATTTTACTGAAACTTCACAGAAATTTTGGAAATCGAAGTGATTTGGGATGAAAATTGAAAATTTTAAAAATCGCTCCTTCTTATATGTCTAACATTTTTAGCTCTAATTTTTTGTAGTTGGCGATTTTTTCGTATCTTATTTAGTTTTTGAGATACAACGGTAATCCGATCTCTACACATCTAAACCAGTCAAATTTTCAGTCCGAAGGTGGCTCTGGCTCCGAGAACAGTCTCCTGCTCGCCATGAAGGCCCTCGCCAGCATGCACATCCTTCTCTTCTTCATCTCGGTCGTCGTGATGGGCGGTGGCGCTGGCCTCGTCTTCAGCTTCCTCTATTGGCATCTCCAAGACATCGGAGGCTCTCCAGTCCTGTTTGGAATCCTCTCCGTCGTCAATCATGCATCAGAGATTATCACCTACTTCTATGTCTTCAAACTCATCAATAAGGTAGGTATCGAGGGCAAAAATATCGAAAATGGAAATGCAGCGAGAAGGAATTGAACTCGTGAGCTCTCGATCCAAAACCAGGCGCTCTATCCACTGCGCCGTGTGCTGTGGCGCAGTGGATAGAGCTTTTCGCTTTGAAGCAAGAGCCCGCGAGCTCAATTCCTTCCAGCGTCAGTTAGGTTGTTTTTTAATCGTTTTCCATCCCCTTTTATCACTATTTTCCAGTACGGCCATGTGCGCGTTATGTATCTCTGCCTCGCTGTCAACTTCTTCCGTTTCATGGCCCTCTCGATCCTGGACAACCCGTGGATGGTCCTCCCGCTTCAGGTTTTGCAAGGTAAATTTCACTTTAAAAATGAATTCAAATTCTAAATTTCTTCCAG</canonical>
            <polymorphic>AAGAAGGAGCGATTTTCAAAATTTTCAATTTTCATCCCAAATCACTTCGATTTCCAAAATTTCTGGGAATTTGGAAATTTTACGTGATTCACAGAAATTGAATGTTGCAATTTCTGGGATTTTTCACAGAACTCGACGGTTCGAGTTCTGGGATTTTGGAAATTCACGTGATTTTACTGAAACTTCACAGAAATTTTGGAAATCGAAGTGATTTGGGATGAAAATTGAAAATTTTAAAAATCGCTCCTTCTTATATGTCTAACATTTTTAGCTCTAATTTTTTGTAGTTGGCGATTTTTTCGTATCTTATTTAGTTTTTGAGATACAACGGTAATCCGATCTCTACACATCTAAACCAGTCAAATTTTCAGTCCGAAGGTGGCTCTGGCTCCGAGAACAGTCTCCTGCTCGCCATGAAGGCCCTCGCCAGCATGCACATCCTTCTCTTCTTCATCTCGGTCGTCGTGATGGGCGGTGGCGCTGGCCTCGTCTTCAGCTTYCTCTATTGGCATCTCCAAGACATCGGAGGCTCTCCAGTCCTGTTTGGAATCCTCTCCGTCGTCAATCATGCATCAGAGATTATCACCTACTTCTATGTCTTCAAACTCATCAATAAGGTAGGTATCGAGGGCAAAAATATCGAAAATGGAAATGCAGCGAGAAGGAATTGAACTCGTGAGCTCTCGATCCAAAACCAGGCGCTCTATCCACTGCGCCGTGTGCTGTGGCGCAGTGGATAGAGCTTTTCGCTTTGAAGCAAGAGCCCGCGAGCTCAATTCCTTCCAGCGTCAGTTAGGTTGTTTTTTAATCGTTTTCCATCCCCTTTTATCACTATTTTCCAGTACGGCCATGTGCGCGTTATGTATCTCTGCCTCGCTGTCAACTTCTTCCGTTTCATGGCCCTCTCGATCCTGGACAACCCGTGGATGGTCCTCCCGCTTCAGGTTTTGCAAGGTAAATTTCACTTTAAAAATGAATTCAAATTCTAAATTTCTTCCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAAACCAGTCAAATTTTCAGTC</pcr_primer_p1>
		<pcr_primer_p2>GACATAGAAGTAGGTGATAATCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTAAACCAGTCAAATTTTCAGTCCGAAGGTGGCTCTGGCTCCGAGAACAGTCTCCTGCTCGCCATGAAGGCCCTCGCCAGCATGCACATCCTTCTCTTCTTCATCTCGGTCGTCGTGATGGGCGGTGGCGCTGGCCTCGTCTTCAGCTTCCTCTATTGGCATCTCCAAGACATCGGAGGCTCTCCAGTCCTGTTTGGAATCCTCTCCGTCGTCAATCATGCATCAGAGATTATCACCTACTTCTATGTC</canonical_amplicon>
		<polymorphic_amplicon>CTAAACCAGTCAAATTTTCAGTCCGAAGGTGGCTCTGGCTCCGAGAACAGTCTCCTGCTCGCCATGAAGGCCCTCGCCAGCATGCACATCCTTCTCTTCTTCATCTCGGTCGTCGTGATGGGCGGTGGCGCTGGCCTCGTCTTCAGCTTYCTCTATTGGCATCTCCAAGACATCGGAGGCTCTCCAGTCCTGTTTGGAATCCTCTCCGTCGTCAATCATGCATCAGAGATTATCACCTACTTCTATGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22189</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>169818</contig_pos>
        <strand>+</strand>
        <context>AAATTGTTCG[A/G]TTAAAAACCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGGAAATTAGGATTCTTTGATTATTCAGCTCATAAAATGAAATTGTTCG</left_flank>
        <right_flank>TTAAAAACCTATACTCACCCTTGCCCATGCTTCTCAACTCCTCCAATCGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTCTCTGAATAACTTTTTTATCAGAATTGTGGGTAACAAAACAACGAAAGGAGATAATCGGATGATGTAGATTGGGGGATTGGTTATTAAAAAGATAAAAATCAACAATTTCAACAAAACAAAAAAACAAAAACCACGTCTTCAGGCTTCCGCCGTCGCCTTCACCAACTTGGCCTTCTTTTTCAGCTTCAGCGCATCGTTGCGATTTCGTTTGAACGTCGTCTTCATGCTGTGGTAGACACGTTGGTGCTTCTTCGAAATCATCAATTCGCGCATCTTCAACTCTTGTCCCTTCTCGACTGTCTCGTGGAACTTCTCCTTGCTCTTCTTGTGCATCTGTCCGACGGCGATGTGGATTCCCTTTGGCTTTTCTGGCTTGACCTCCTTTCTGCGCATCGGCAGCTCGTCCATGGTCTTTGGAATAGCGGCTTCGAGCTCGGAGACGTCTGGAAATTAGGATTCTTTGATTATTCAGCTCATAAAATGAAATTGTTCGATTAAAAACCTATACTCACCCTTGCCCATGCTTCTCAACTCCTCCAATCGTTCAAATGGAATGTAGTCTCCAGCCTTTTCAGATGTAAACGGCGAGAAATGTGGTGGCAGTGCAACTCCTGGCATATACCTCTCCGTTGGCAACTTTCTACGAGCATTCAAGCAATCGAACACCCACTGTGGCTGTACATAGAGTCGATTTACTTCTAACTTGTCCATTGGCCGATCTACGATGTGATGTGTGATGTTTTTGCTATCAGCTTTCAAATCATTCGGTGCTCCTTCCCATCCAACAACTCCACCTCCGTTTCTAATGATAAATGTTAGAGCTTCCTTTGGACACTCGCGATTGAGATAAAAAACGCATCCTTTGAACAGGGTCTTGATATTCTTGGCTTCTTTGACTTTCTGTGCAAGAGCATCAGAATCTTCTCCGAGAAGATCCAATGGCTCATCATCTTCGGTCTGCTCCACATCCTTTCTTTTCGCCAATGGCTTCGCC</canonical>
            <polymorphic>CTTTTCTCTGAATAACTTTTTTATCAGAATTGTGGGTAACAAAACAACGAAAGGAGATAATCGGATGATGTAGATTGGGGGATTGGTTATTAAAAAGATAAAAATCAACAATTTCAACAAAACAAAAAAACAAAAACCACGTCTTCAGGCTTCCGCCGTCGCCTTCACCAACTTGGCCTTCTTTTTCAGCTTCAGCGCATCGTTGCGATTTCGTTTGAACGTCGTCTTCATGCTGTGGTAGACACGTTGGTGCTTCTTCGAAATCATCAATTCGCGCATCTTCAACTCTTGTCCCTTCTCGACTGTCTCGTGGAACTTCTCCTTGCTCTTCTTGTGCATCTGTCCGACGGCGATGTGGATTCCCTTTGGCTTTTCTGGCTTGACCTCCTTTCTGCGCATCGGCAGCTCGTCCATGGTCTTTGGAATAGCGGCTTCGAGCTCGGAGACGTCTGGAAATTAGGATTCTTTGATTATTCAGCTCATAAAATGAAATTGTTCGRTTAAAAACCTATACTCACCCTTGCCCATGCTTCTCAACTCCTCCAATCGTTCAAATGGAATGTAGTCTCCAGCCTTTTCAGATGTAAACGGCGAGAAATGTGGTGGCAGTGCAACTCCTGGCATATACCTCTCCGTTGGCAACTTTCTACGAGCATTCAAGCAATCGAACACCCACTGTGGCTGTACATAGAGTCGATTTACTTCTAACTTGTCCATTGGCCGATCTACGATGTGATGTGTGATGTTTTTGCTATCAGCTTTCAAATCATTCGGTGCTCCTTCCCATCCAACAACTCCACCTCCGTTTCTAATGATAAATGTTAGAGCTTCCTTTGGACACTCGCGATTGAGATAAAAAACGCATCCTTTGAACAGGGTCTTGATATTCTTGGCTTCTTTGACTTTCTGTGCAAGAGCATCAGAATCTTCTCCGAGAAGATCCAATGGCTCATCATCTTCGGTCTGCTCCACATCCTTTCTTTTCGCCAATGGCTTCGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>305 259 168 135 63 41 29</canonical_bands>
                <polymorphic_bands>305 259 231 135 41 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTGCTCTTCTTGTGCATCT</pcr_primer_p1>
		<pcr_primer_p2>GGAGACTACATTCCATTTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTGCTCTTCTTGTGCATCTGTCCGACGGCGATGTGGATTCCCTTTGGCTTTTCTGGCTTGACCTCCTTTCTGCGCATCGGCAGCTCGTCCATGGTCTTTGGAATAGCGGCTTCGAGCTCGGAGACGTCTGGAAATTAGGATTCTTTGATTATTCAGCTCATAAAATGAAATTGTTCGATTAAAAACCTATACTCACCCTTGCCCATGCTTCTCAACTCCTCCAATCGTTCAAATGGAATGTAGTCTCC</canonical_amplicon>
		<polymorphic_amplicon>CTTGCTCTTCTTGTGCATCTGTCCGACGGCGATGTGGATTCCCTTTGGCTTTTCTGGCTTGACCTCCTTTCTGCGCATCGGCAGCTCGTCCATGGTCTTTGGAATAGCGGCTTCGAGCTCGGAGACGTCTGGAAATTAGGATTCTTTGATTATTCAGCTCATAAAATGAAATTGTTCGRTTAAAAACCTATACTCACCCTTGCCCATGCTTCTCAACTCCTCCAATCGTTCAAATGGAATGTAGTCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22190</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>169777</contig_pos>
        <strand>+</strand>
        <context>TCTGGAAATT[A/G]GGATTCTTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCCATGGTCTTTGGAATAGCGGCTTCGAGCTCGGAGACGTCTGGAAATT</left_flank>
        <right_flank>GGATTCTTTGATTATTCAGCTCATAAAATGAAATTGTTCGATTAAAAACC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGAATTTTTCCCTACACTGCAATAATAAGTTTCTGTTTTCTTTTCTCTGAATAACTTTTTTATCAGAATTGTGGGTAACAAAACAACGAAAGGAGATAATCGGATGATGTAGATTGGGGGATTGGTTATTAAAAAGATAAAAATCAACAATTTCAACAAAACAAAAAAACAAAAACCACGTCTTCAGGCTTCCGCCGTCGCCTTCACCAACTTGGCCTTCTTTTTCAGCTTCAGCGCATCGTTGCGATTTCGTTTGAACGTCGTCTTCATGCTGTGGTAGACACGTTGGTGCTTCTTCGAAATCATCAATTCGCGCATCTTCAACTCTTGTCCCTTCTCGACTGTCTCGTGGAACTTCTCCTTGCTCTTCTTGTGCATCTGTCCGACGGCGATGTGGATTCCCTTTGGCTTTTCTGGCTTGACCTCCTTTCTGCGCATCGGCAGCTCGTCCATGGTCTTTGGAATAGCGGCTTCGAGCTCGGAGACGTCTGGAAATTAGGATTCTTTGATTATTCAGCTCATAAAATGAAATTGTTCGATTAAAAACCTATACTCACCCTTGCCCATGCTTCTCAACTCCTCCAATCGTTCAAATGGAATGTAGTCTCCAGCCTTTTCAGATGTAAACGGCGAGAAATGTGGTGGCAGTGCAACTCCTGGCATATACCTCTCCGTTGGCAACTTTCTACGAGCATTCAAGCAATCGAACACCCACTGTGGCTGTACATAGAGTCGATTTACTTCTAACTTGTCCATTGGCCGATCTACGATGTGATGTGTGATGTTTTTGCTATCAGCTTTCAAATCATTCGGTGCTCCTTCCCATCCAACAACTCCACCTCCGTTTCTAATGATAAATGTTAGAGCTTCCTTTGGACACTCGCGATTGAGATAAAAAACGCATCCTTTGAACAGGGTCTTGATATTCTTGGCTTCTTTGACTTTCTGTGCAAGAGCATCAGAATCTTCTCCGAGAAGATCCAATGGCTCATCATCTT</canonical>
            <polymorphic>TTGGAATTTTTCCCTACACTGCAATAATAAGTTTCTGTTTTCTTTTCTCTGAATAACTTTTTTATCAGAATTGTGGGTAACAAAACAACGAAAGGAGATAATCGGATGATGTAGATTGGGGGATTGGTTATTAAAAAGATAAAAATCAACAATTTCAACAAAACAAAAAAACAAAAACCACGTCTTCAGGCTTCCGCCGTCGCCTTCACCAACTTGGCCTTCTTTTTCAGCTTCAGCGCATCGTTGCGATTTCGTTTGAACGTCGTCTTCATGCTGTGGTAGACACGTTGGTGCTTCTTCGAAATCATCAATTCGCGCATCTTCAACTCTTGTCCCTTCTCGACTGTCTCGTGGAACTTCTCCTTGCTCTTCTTGTGCATCTGTCCGACGGCGATGTGGATTCCCTTTGGCTTTTCTGGCTTGACCTCCTTTCTGCGCATCGGCAGCTCGTCCATGGTCTTTGGAATAGCGGCTTCGAGCTCGGAGACGTCTGGAAATTRGGATTCTTTGATTATTCAGCTCATAAAATGAAATTGTTCGATTAAAAACCTATACTCACCCTTGCCCATGCTTCTCAACTCCTCCAATCGTTCAAATGGAATGTAGTCTCCAGCCTTTTCAGATGTAAACGGCGAGAAATGTGGTGGCAGTGCAACTCCTGGCATATACCTCTCCGTTGGCAACTTTCTACGAGCATTCAAGCAATCGAACACCCACTGTGGCTGTACATAGAGTCGATTTACTTCTAACTTGTCCATTGGCCGATCTACGATGTGATGTGTGATGTTTTTGCTATCAGCTTTCAAATCATTCGGTGCTCCTTCCCATCCAACAACTCCACCTCCGTTTCTAATGATAAATGTTAGAGCTTCCTTTGGACACTCGCGATTGAGATAAAAAACGCATCCTTTGAACAGGGTCTTGATATTCTTGGCTTCTTTGACTTTCTGTGCAAGAGCATCAGAATCTTCTCCGAGAAGATCCAATGGCTCATCATCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGCTCTTCTTGTGCATCT</pcr_primer_p1>
		<pcr_primer_p2>GGAGACTACATTCCATTTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTGCTCTTCTTGTGCATCTGTCCGACGGCGATGTGGATTCCCTTTGGCTTTTCTGGCTTGACCTCCTTTCTGCGCATCGGCAGCTCGTCCATGGTCTTTGGAATAGCGGCTTCGAGCTCGGAGACGTCTGGAAATTAGGATTCTTTGATTATTCAGCTCATAAAATGAAATTGTTCGATTAAAAACCTATACTCACCCTTGCCCATGCTTCTCAACTCCTCCAATCGTTCAAATGGAATGTAGTCTCC</canonical_amplicon>
		<polymorphic_amplicon>CTTGCTCTTCTTGTGCATCTGTCCGACGGCGATGTGGATTCCCTTTGGCTTTTCTGGCTTGACCTCCTTTCTGCGCATCGGCAGCTCGTCCATGGTCTTTGGAATAGCGGCTTCGAGCTCGGAGACGTCTGGAAATTRGGATTCTTTGATTATTCAGCTCATAAAATGAAATTGTTCGATTAAAAACCTATACTCACCCTTGCCCATGCTTCTCAACTCCTCCAATCGTTCAAATGGAATGTAGTCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22191</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>169589</contig_pos>
        <strand>+</strand>
        <context>AAATCATCAA[C/T]TCGCGCATCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCGTCTTCATGCTGTGGTAGACACGTTGGTGCTTCTTCGAAATCATCAA</left_flank>
        <right_flank>TCGCGCATCTTCAACTCTTGTCCCTTCTCGACTGTCTCGTGGAACTTCTC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGGATCCAACACAAGATGCCTATGATAGATACGTGTCGACGACACGTTAGATCTTCGAATTTTGATGACCTAAATTATTACTATGCAATACAAAACAAAAAGAACAAGAAGAACTCGCCTTAGATCTCACCTAGAAGTTAAAAAAAAAGAGCAATAATAACTATTTTTTGTCTCCTAATTTATTTTTTGGAATTTTTCCCTACACTGCAATAATAAGTTTCTGTTTTCTTTTCTCTGAATAACTTTTTTATCAGAATTGTGGGTAACAAAACAACGAAAGGAGATAATCGGATGATGTAGATTGGGGGATTGGTTATTAAAAAGATAAAAATCAACAATTTCAACAAAACAAAAAAACAAAAACCACGTCTTCAGGCTTCCGCCGTCGCCTTCACCAACTTGGCCTTCTTTTTCAGCTTCAGCGCATCGTTGCGATTTCGTTTGAACGTCGTCTTCATGCTGTGGTAGACACGTTGGTGCTTCTTCGAAATCATCAATTCGCGCATCTTCAACTCTTGTCCCTTCTCGACTGTCTCGTGGAACTTCTCCTTGCTCTTCTTGTGCATCTGTCCGACGGCGATGTGGATTCCCTTTGGCTTTTCTGGCTTGACCTCCTTTCTGCGCATCGGCAGCTCGTCCATGGTCTTTGGAATAGCGGCTTCGAGCTCGGAGACGTCTGGAAATTAGGATTCTTTGATTATTCAGCTCATAAAATGAAATTGTTCGATTAAAAACCTATACTCACCCTTGCCCATGCTTCTCAACTCCTCCAATCGTTCAAATGGAATGTAGTCTCCAGCCTTTTCAGATGTAAACGGCGAGAAATGTGGTGGCAGTGCAACTCCTGGCATATACCTCTCCGTTGGCAACTTTCTACGAGCATTCAAGCAATCGAACACCCACTGTGGCTGTACATAGAGTCGATTTACTTCTAACTTGTCCATTGGCCGATCTACGATGTGATGTGTGATGTTTTTGCTATCAGCTTTCAAATCATT</canonical>
            <polymorphic>GGAGGATCCAACACAAGATGCCTATGATAGATACGTGTCGACGACACGTTAGATCTTCGAATTTTGATGACCTAAATTATTACTATGCAATACAAAACAAAAAGAACAAGAAGAACTCGCCTTAGATCTCACCTAGAAGTTAAAAAAAAAGAGCAATAATAACTATTTTTTGTCTCCTAATTTATTTTTTGGAATTTTTCCCTACACTGCAATAATAAGTTTCTGTTTTCTTTTCTCTGAATAACTTTTTTATCAGAATTGTGGGTAACAAAACAACGAAAGGAGATAATCGGATGATGTAGATTGGGGGATTGGTTATTAAAAAGATAAAAATCAACAATTTCAACAAAACAAAAAAACAAAAACCACGTCTTCAGGCTTCCGCCGTCGCCTTCACCAACTTGGCCTTCTTTTTCAGCTTCAGCGCATCGTTGCGATTTCGTTTGAACGTCGTCTTCATGCTGTGGTAGACACGTTGGTGCTTCTTCGAAATCATCAAYTCGCGCATCTTCAACTCTTGTCCCTTCTCGACTGTCTCGTGGAACTTCTCCTTGCTCTTCTTGTGCATCTGTCCGACGGCGATGTGGATTCCCTTTGGCTTTTCTGGCTTGACCTCCTTTCTGCGCATCGGCAGCTCGTCCATGGTCTTTGGAATAGCGGCTTCGAGCTCGGAGACGTCTGGAAATTAGGATTCTTTGATTATTCAGCTCATAAAATGAAATTGTTCGATTAAAAACCTATACTCACCCTTGCCCATGCTTCTCAACTCCTCCAATCGTTCAAATGGAATGTAGTCTCCAGCCTTTTCAGATGTAAACGGCGAGAAATGTGGTGGCAGTGCAACTCCTGGCATATACCTCTCCGTTGGCAACTTTCTACGAGCATTCAAGCAATCGAACACCCACTGTGGCTGTACATAGAGTCGATTTACTTCTAACTTGTCCATTGGCCGATCTACGATGTGATGTGTGATGTTTTTGCTATCAGCTTTCAAATCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>281 186 159 104 82 64 59 36 15 14</canonical_bands>
                <polymorphic_bands>345 281 104 82 64 59 36 15 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGGATTGGTTATTAAAAAGATA</pcr_primer_p1>
		<pcr_primer_p2>AAGGAGAAGTTCCACGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGGGATTGGTTATTAAAAAGATAAAAATCAACAATTTCAACAAAACAAAAAAACAAAAACCACGTCTTCAGGCTTCCGCCGTCGCCTTCACCAACTTGGCCTTCTTTTTCAGCTTCAGCGCATCGTTGCGATTTCGTTTGAACGTCGTCTTCATGCTGTGGTAGACACGTTGGTGCTTCTTCGAAATCATCAATTCGCGCATCTTCAACTCTTGTCCCTTCTCGACTGTCTCGTGGAACTTCTCCTT</canonical_amplicon>
		<polymorphic_amplicon>GGGGATTGGTTATTAAAAAGATAAAAATCAACAATTTCAACAAAACAAAAAAACAAAAACCACGTCTTCAGGCTTCCGCCGTCGCCTTCACCAACTTGGCCTTCTTTTTCAGCTTCAGCGCATCGTTGCGATTTCGTTTGAACGTCGTCTTCATGCTGTGGTAGACACGTTGGTGCTTCTTCGAAATCATCAAYTCGCGCATCTTCAACTCTTGTCCCTTCTCGACTGTCTCGTGGAACTTCTCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22235</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>12557</contig_pos>
        <strand>+</strand>
        <context>ACTTGTTTTC[A/T]GCCGATCTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTTTCTGGAAATTTTCCAAAATGCAATTTTAAAATGGCCACTTGTTTTC</left_flank>
        <right_flank>GCCGATCTCTAGTTTATGATAGTTTTGTGGGGATAACAATTTTTTTGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAACCCGTTTCTTTGCACAAATATGTACCTCTTTATACTTACACAAAAGTGTGTGACCTTTTTTTTTTCAAAAGTTTCCAAACGTTTTCCTAGGACAACGACTCCATTTTTTCTCTTCACCCCCTTTCAACAACCATTCGGACAAGTGTTTCATGATTCCGAGGTACGCGAGAACAAATATGAAAACTTGAAGGGGGGTAAAAACTTATTGAATTGGACTGACTGTGGAAAATATTTTTGAAAAAAAAAACGGATAGATATTTCCATCCTCTTCTTTTTCGTATTTTGTTCCTTCATATGGCTTTTCACACCTTTTCATACAAAAAAAGTTTATTCTTCTTTTTTTTTGCAACAAATTGCTGTTTTCCAGGCAGTCGTCGCTTTTATTCAAAGAATTCAAAGCGATCCACAATAGAGCGGCCTCTCGCGTGATCTTCAGATTTTTTTCTCTTTCTGGAAATTTTCCAAAATGCAATTTTAAAATGGCCACTTGTTTTCAGCCGATCTCTAGTTTATGATAGTTTTGTGGGGATAACAATTTTTTTGTTTTCTTGCTAGACGTAGAATTCCAGTAATTGTGAAAAAAAGCCGGTGACAGCTGAAATTGAAAATTTACTTCAAAGAAAATTTGTTAAGAAAGTATTAGCTATTATGAAATTCGATTACCGTAATACCTGCAATAGAAGCGTCTCCTAACTTTTAGCTTTGAACCAATTGTTCTGGGTTCCTGTAAAAATATGAACAAGTTTTCAACTGATGAATTGTTTGTCATGTTTTCAGCAACATTTTGTCAGTTGATAGATTTTTGATATCAAGCACAGGAATTGAGATAATTGAGCTCAAACTTGGCAGTGAGAGGATTTCTATTACAGGTTTCCTGGTAGATGGGATCCCACACTGTCATCTTTAAGCTCAATTATCTCAATTCCTATGCAAGTTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTAGTGTCAGATTCATTCGATATAAAAAAG</canonical>
            <polymorphic>ACAACCCGTTTCTTTGCACAAATATGTACCTCTTTATACTTACACAAAAGTGTGTGACCTTTTTTTTTTCAAAAGTTTCCAAACGTTTTCCTAGGACAACGACTCCATTTTTTCTCTTCACCCCCTTTCAACAACCATTCGGACAAGTGTTTCATGATTCCGAGGTACGCGAGAACAAATATGAAAACTTGAAGGGGGGTAAAAACTTATTGAATTGGACTGACTGTGGAAAATATTTTTGAAAAAAAAAACGGATAGATATTTCCATCCTCTTCTTTTTCGTATTTTGTTCCTTCATATGGCTTTTCACACCTTTTCATACAAAAAAAGTTTATTCTTCTTTTTTTTTGCAACAAATTGCTGTTTTCCAGGCAGTCGTCGCTTTTATTCAAAGAATTCAAAGCGATCCACAATAGAGCGGCCTCTCGCGTGATCTTCAGATTTTTTTCTCTTTCTGGAAATTTTCCAAAATGCAATTTTAAAATGGCCACTTGTTTTCWGCCGATCTCTAGTTTATGATAGTTTTGTGGGGATAACAATTTTTTTGTTTTCTTGCTAGACGTAGAATTCCAGTAATTGTGAAAAAAAGCCGGTGACAGCTGAAATTGAAAATTTACTTCAAAGAAAATTTGTTAAGAAAGTATTAGCTATTATGAAATTCGATTACCGTAATACCTGCAATAGAAGCGTCTCCTAACTTTTAGCTTTGAACCAATTGTTCTGGGTTCCTGTAAAAATATGAACAAGTTTTCAACTGATGAATTGTTTGTCATGTTTTCAGCAACATTTTGTCAGTTGATAGATTTTTGATATCAAGCACAGGAATTGAGATAATTGAGCTCAAACTTGGCAGTGAGAGGATTTCTATTACAGGTTTCCTGGTAGATGGGATCCCACACTGTCATCTTTAAGCTCAATTATCTCAATTCCTATGCAAGTTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTAGTGTCAGATTCATTCGATATAAAAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>302 135 119 88 88 73 66 57 48 14 10</canonical_bands>
                <polymorphic_bands>302 135 119 102 88 73 66 57 48 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTTCACACCTTTTCATACAA</pcr_primer_p1>
		<pcr_primer_p2>TACGTCTAGCAAGAAAACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>CTTTTCACACCTTTTCATACAAAAAAAGTTTATTCTTCTTTTTTTTTGCAACAAATTGCTGTTTTCCAGGCAGTCGTCGCTTTTATTCAAAGAATTCAAAGCGATCCACAATAGAGCGGCCTCTCGCGTGATCTTCAGATTTTTTTCTCTTTCTGGAAATTTTCCAAAATGCAATTTTAAAATGGCCACTTGTTTTCAGCCGATCTCTAGTTTATGATAGTTTTGTGGGGATAACAATTTTTTTGTTTTCTTGCTAGACGTA</canonical_amplicon>
		<polymorphic_amplicon>CTTTTCACACCTTTTCATACAAAAAAAGTTTATTCTTCTTTTTTTTTGCAACAAATTGCTGTTTTCCAGGCAGTCGTCGCTTTTATTCAAAGAATTCAAAGCGATCCACAATAGAGCGGCCTCTCGCGTGATCTTCAGATTTTTTTCTCTTTCTGGAAATTTTCCAAAATGCAATTTTAAAATGGCCACTTGTTTTCWGCCGATCTCTAGTTTATGATAGTTTTGTGGGGATAACAATTTTTTTGTTTTCTTGCTAGACGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22277</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>72133</contig_pos>
        <strand>+</strand>
        <context>AGAGAGAACG[C/G]AAGGATTCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGAGCTCTGAGAACCAGTCATGCCAATGGAAAGTTGTCGGAGAGAGAACG</left_flank>
        <right_flank>AAGGATTCTCATCGCAGTAATGTGTCTTCTCAAGTGAGTTTTAAAAAGTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCAGTTGAGCAAATCATTCTGGCTCCAATTCCATCAGAAAACGTGTGGGCGAAGCGGAAAGAGGAGCGAGAGTCGTTGGAGCGCGAGAAGGTAACTTATTAGTTTAGGTGATTCAATTTATATTTTCATTTGTTTCAGCAGCAGAAGTCTCTCATGCCACGTGTCATGCAACAAGCCATTGAGCAGCACTTCCCGAAGGTTCACGACTCTGCCACAATCAAGGTGAACAAAGAATCGACAAGGAAATCGAGTGATACTGAATTCACTCGAGCTGCGATTCGTGCTCGCAAACAAGCAACATCCAATGATGTTCGACGATTGATTGATACCGATAGCGGTGTGAGGATCATGTTAGCAGCTCGAAATGGAAACCAGGAGAACAATGGTGCAGAGGATCGGCCGCATCAGCATGGCAAAGGAGGCAACCAACACTACAAAAACCAAAATGGAGCTCTGAGAACCAGTCATGCCAATGGAAAGTTGTCGGAGAGAGAACGGAAGGATTCTCATCGCAGTAATGTGTCTTCTCAAGTGAGTTTTAAAAAGTATTAAGGGATGTACTCGAGCTGGGATGGGAATTTATTCATTTTTGAGGTTTTTCAGAGGTTTTTCATGAAACAAAAATTTCATCAAAATCGTTACAAGAAGGTATTTGACAGAGCATGACGCGAAATTTAGTTTTTAAAATAATAATCATAATAATAATTTAACTTTTGTTTTGGACAGATAGCTAATTCTTCAATTCTTTGAGTAACAGTTTTTTTTCCTCTAATTGGGTTCAGAATGTTTCTCACAAAACCTTAAAAATCGATTTCCAGCATTCCGAGGACAACCGAAGAATGGCAAATGGTCATGCCAAGAAGTGCGAAGATGTGACAAATGTCAACGTGGCAAATTGGGCGGACGAAATGGAGAATGATGGATTCCAAGAAGTTGGAAAGAAGAAGAAAGTGAAGTTGCTTGAGAAGCAAGCTGCCAAATCCCGAGCTAAGGATCAA</canonical>
            <polymorphic>CTTCAGTTGAGCAAATCATTCTGGCTCCAATTCCATCAGAAAACGTGTGGGCGAAGCGGAAAGAGGAGCGAGAGTCGTTGGAGCGCGAGAAGGTAACTTATTAGTTTAGGTGATTCAATTTATATTTTCATTTGTTTCAGCAGCAGAAGTCTCTCATGCCACGTGTCATGCAACAAGCCATTGAGCAGCACTTCCCGAAGGTTCACGACTCTGCCACAATCAAGGTGAACAAAGAATCGACAAGGAAATCGAGTGATACTGAATTCACTCGAGCTGCGATTCGTGCTCGCAAACAAGCAACATCCAATGATGTTCGACGATTGATTGATACCGATAGCGGTGTGAGGATCATGTTAGCAGCTCGAAATGGAAACCAGGAGAACAATGGTGCAGAGGATCGGCCGCATCAGCATGGCAAAGGAGGCAACCAACACTACAAAAACCAAAATGGAGCTCTGAGAACCAGTCATGCCAATGGAAAGTTGTCGGAGAGAGAACGSAAGGATTCTCATCGCAGTAATGTGTCTTCTCAAGTGAGTTTTAAAAAGTATTAAGGGATGTACTCGAGCTGGGATGGGAATTTATTCATTTTTGAGGTTTTTCAGAGGTTTTTCATGAAACAAAAATTTCATCAAAATCGTTACAAGAAGGTATTTGACAGAGCATGACGCGAAATTTAGTTTTTAAAATAATAATCATAATAATAATTTAACTTTTGTTTTGGACAGATAGCTAATTCTTCAATTCTTTGAGTAACAGTTTTTTTTCCTCTAATTGGGTTCAGAATGTTTCTCACAAAACCTTAAAAATCGATTTCCAGCATTCCGAGGACAACCGAAGAATGGCAAATGGTCATGCCAAGAAGTGCGAAGATGTGACAAATGTCAACGTGGCAAATTGGGCGGACGAAATGGAGAATGATGGATTCCAAGAAGTTGGAAAGAAGAAGAAAGTGAAGTTGCTTGAGAAGCAAGCTGCCAAATCCCGAGCTAAGGATCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACGATTGATTGATACCGATAG</pcr_primer_p1>
		<pcr_primer_p2>CGAGTACATCCCTTAATACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GACGATTGATTGATACCGATAGCGGTGTGAGGATCATGTTAGCAGCTCGAAATGGAAACCAGGAGAACAATGGTGCAGAGGATCGGCCGCATCAGCATGGCAAAGGAGGCAACCAACACTACAAAAACCAAAATGGAGCTCTGAGAACCAGTCATGCCAATGGAAAGTTGTCGGAGAGAGAACGGAAGGATTCTCATCGCAGTAATGTGTCTTCTCAAGTGAGTTTTAAAAAGTATTAAGGGATGTACTCG</canonical_amplicon>
		<polymorphic_amplicon>GACGATTGATTGATACCGATAGCGGTGTGAGGATCATGTTAGCAGCTCGAAATGGAAACCAGGAGAACAATGGTGCAGAGGATCGGCCGCATCAGCATGGCAAAGGAGGCAACCAACACTACAAAAACCAAAATGGAGCTCTGAGAACCAGTCATGCCAATGGAAAGTTGTCGGAGAGAGAACGSAAGGATTCTCATCGCAGTAATGTGTCTTCTCAAGTGAGTTTTAAAAAGTATTAAGGGATGTACTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22278</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>170844</contig_pos>
        <strand>+</strand>
        <context>GTGTGTTCTG[A/C]ACTGCAAGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAATGATAATTTTTAAGTAGTAATGATATACGAAAGAAGGTGTGTTCTG</left_flank>
        <right_flank>ACTGCAAGTTCAAATTAGATCTACCATGCAAAATGTTTAGTCACAATTTC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTGAATCAATTTTTTGGAAACGAGAACTCACTTTGAGCTCAGACTCGGCGAGCCAGGAGTTCCAGATCACATGATCATATCCCTTCCACTTGATTAAGTACTCCTTTTTGTTTCCTATGGACCGACTCTTGATGATCGTGTCGATTTCATAATTTTGCTTGGATAAAGTGCGCGATGGATCGACGGTTTGGCGGTATTCGTTGATAACTTCGGCGTATTGCTGAAAAACGTTTGAATGCTAATTTCGATATATCACCGGCAGTATTGACGAAAATCGTTTTGGTAAAGCAGGACTTTTCAGAAATTATTCGGCGGAAATTGATAAGGAATTGGCTAACATCGAAATGAAAAGTGGAAATCGCACGTTTTCACCTTTAACTGTTGATCTACTGTAGAAACAAGAAAACGCGTTTTAGTACTACTTCTCATTTACCTACTCATTTTGAAAAATGATAATTTTTAAGTAGTAATGATATACGAAAGAAGGTGTGTTCTGCACTGCAAGTTCAAATTAGATCTACCATGCAAAATGTTTAGTCACAATTTCAGCAGATTTTGTCTCATTTTTCAAGTCGTGAGGTTATCAAAATGAGTTCTTAGAAATCGCAGTATTGAAACTATGTACCAGAACAGGCCTGTGCGGCGACAAATTGCCGATTGCCGAAATTTCCGAAATTGCCGAATTTTTGTTGCCGATTTTCCGTTGCCGAAATCGGCAACGAAGAAAAAGTTGCCGAATTGCCGTTGCCGATTTCGGCAACTTCGGCAACTGAAGTTTTTTTGAATTTAGAGATTTTCACAATGTTTTTTAGTCAAAAAAATGATTTCGAAGTTCGAAAAATCAAATTTTGAACACCATCATCCCTCAGAATGAATTTTAGAGGAAATGTGTCCCAATAATCATCAAAAATACTTGCATCGGATCTTAAAATGAGCTTCAAATTTGTGAGCATAGGAGAAAAATAGATATCATGAGTCACAACTCATCAAAAAAATT</canonical>
            <polymorphic>AATTTGAATCAATTTTTTGGAAACGAGAACTCACTTTGAGCTCAGACTCGGCGAGCCAGGAGTTCCAGATCACATGATCATATCCCTTCCACTTGATTAAGTACTCCTTTTTGTTTCCTATGGACCGACTCTTGATGATCGTGTCGATTTCATAATTTTGCTTGGATAAAGTGCGCGATGGATCGACGGTTTGGCGGTATTCGTTGATAACTTCGGCGTATTGCTGAAAAACGTTTGAATGCTAATTTCGATATATCACCGGCAGTATTGACGAAAATCGTTTTGGTAAAGCAGGACTTTTCAGAAATTATTCGGCGGAAATTGATAAGGAATTGGCTAACATCGAAATGAAAAGTGGAAATCGCACGTTTTCACCTTTAACTGTTGATCTACTGTAGAAACAAGAAAACGCGTTTTAGTACTACTTCTCATTTACCTACTCATTTTGAAAAATGATAATTTTTAAGTAGTAATGATATACGAAAGAAGGTGTGTTCTGMACTGCAAGTTCAAATTAGATCTACCATGCAAAATGTTTAGTCACAATTTCAGCAGATTTTGTCTCATTTTTCAAGTCGTGAGGTTATCAAAATGAGTTCTTAGAAATCGCAGTATTGAAACTATGTACCAGAACAGGCCTGTGCGGCGACAAATTGCCGATTGCCGAAATTTCCGAAATTGCCGAATTTTTGTTGCCGATTTTCCGTTGCCGAAATCGGCAACGAAGAAAAAGTTGCCGAATTGCCGTTGCCGATTTCGGCAACTTCGGCAACTGAAGTTTTTTTGAATTTAGAGATTTTCACAATGTTTTTTAGTCAAAAAAATGATTTCGAAGTTCGAAAAATCAAATTTTGAACACCATCATCCCTCAGAATGAATTTTAGAGGAAATGTGTCCCAATAATCATCAAAAATACTTGCATCGGATCTTAAAATGAGCTTCAAATTTGTGAGCATAGGAGAAAAATAGATATCATGAGTCACAACTCATCAAAAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>499 391 81 24 5</canonical_bands>
                <polymorphic_bands>504 391 81 24</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>159 118 99 85 63 57 56 52 42 39 37 36 33 31 30 19 18 9 8 7 2</canonical_bands>
                <polymorphic_bands>159 118 99 85 63 57 56 52 49 39 37 36 33 31 30 19 18 9 8 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTGATAAGGAATTGGCTAAC</pcr_primer_p1>
		<pcr_primer_p2>ATGAGACAAAATCTGCTGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATTGATAAGGAATTGGCTAACATCGAAATGAAAAGTGGAAATCGCACGTTTTCACCTTTAACTGTTGATCTACTGTAGAAACAAGAAAACGCGTTTTAGTACTACTTCTCATTTACCTACTCATTTTGAAAAATGATAATTTTTAAGTAGTAATGATATACGAAAGAAGGTGTGTTCTGCACTGCAAGTTCAAATTAGATCTACCATGCAAAATGTTTAGTCACAATTTCAGCAGATTTTGTCTCAT</canonical_amplicon>
		<polymorphic_amplicon>AAATTGATAAGGAATTGGCTAACATCGAAATGAAAAGTGGAAATCGCACGTTTTCACCTTTAACTGTTGATCTACTGTAGAAACAAGAAAACGCGTTTTAGTACTACTTCTCATTTACCTACTCATTTTGAAAAATGATAATTTTTAAGTAGTAATGATATACGAAAGAAGGTGTGTTCTGMACTGCAAGTTCAAATTAGATCTACCATGCAAAATGTTTAGTCACAATTTCAGCAGATTTTGTCTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22279</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>248519</contig_pos>
        <strand>+</strand>
        <context>GAGAAACCCA[C/T]TATCCTATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTCCAGAAATCTCCATAGACCATTGCTTCATAATGTGCTGAGAAACCCA</left_flank>
        <right_flank>TATCCTATTTTGATGTGACTCCTATTGGAAGAATTATCAACCGTCTCGCC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAGGTCTGGAACTCACATTCAGCTATCAGGGGGTTCCTATCACTTCGAAAATATTAGAAAATGTAAAACAGACTCAGGTTTCAAAACTTGCATTCACAATTTTTTTTGAAAATTCTTAGCTTTCAGCTCTTTTCCGATTTCCAAAAGAAACCTGTTTTTTCACGTTTTCAGTACAACAAATTGGGGAAATTCAGAAGTCAGAATAGCTAAAAAACTAAGAATTTTCAAAAAATTCTGCAAATGCAAAGTTTTCAATCTAGATCTGTTTTACATCCTCTAAAAGTTTTCAAAGTGATCGGAAACTTGACAGCCGAGCTCCAGACTCCTGAAAATGGTCAAAACAAATAAAAACCATTTGAAAATAAGAATGTGGGAAGCAAAAACTAAAATTTCAGTGTTCTTCCTGTTCTTCTCCCTATCTCTCCTTCTGCTTGGAGGAGTCGCCGCTTCCAGAAATCTCCATAGACCATTGCTTCATAATGTGCTGAGAAACCCACTATCCTATTTTGATGTGACTCCTATTGGAAGAATTATCAACCGTCTCGCCAAAGACATGGAAGTTGTGGATCTCCGTTTGAGTAGCTCTTTCAGATTCCTTGTAATTTCGTTTATGAATATGATGCAGGTAAGAATCCTCAACCTCTTTTACAGTCACCTCAAAAGTCCAGACTGTCATCATTGTCACCTACACCACACCACTATTCATCGTGATTATTATTCCCGTTTATATAATCTACTATTTTGTGCTCAAGTACTCCATTAAGAGTACCCGTCAACTTCAAAGAATCGCTTCGTTAACTCGTTCTCCAATATTTTCGAATTTCTCGGAGACCCTTCAAGGAATTTCAACAGTTAGAGCGTTCCAGTGGAATGATGAGTTTATCAGAAGAAATGATATGCATGTAAGCTAGCCGATTTTGAAATTTTCTATCTAAAATATTATTCTGTTTCAGCTCAACACCCATGTCAGATGCAACTACTACTCCCAAATGTCAAA</canonical>
            <polymorphic>GAAAAGGTCTGGAACTCACATTCAGCTATCAGGGGGTTCCTATCACTTCGAAAATATTAGAAAATGTAAAACAGACTCAGGTTTCAAAACTTGCATTCACAATTTTTTTTGAAAATTCTTAGCTTTCAGCTCTTTTCCGATTTCCAAAAGAAACCTGTTTTTTCACGTTTTCAGTACAACAAATTGGGGAAATTCAGAAGTCAGAATAGCTAAAAAACTAAGAATTTTCAAAAAATTCTGCAAATGCAAAGTTTTCAATCTAGATCTGTTTTACATCCTCTAAAAGTTTTCAAAGTGATCGGAAACTTGACAGCCGAGCTCCAGACTCCTGAAAATGGTCAAAACAAATAAAAACCATTTGAAAATAAGAATGTGGGAAGCAAAAACTAAAATTTCAGTGTTCTTCCTGTTCTTCTCCCTATCTCTCCTTCTGCTTGGAGGAGTCGCCGCTTCCAGAAATCTCCATAGACCATTGCTTCATAATGTGCTGAGAAACCCAYTATCCTATTTTGATGTGACTCCTATTGGAAGAATTATCAACCGTCTCGCCAAAGACATGGAAGTTGTGGATCTCCGTTTGAGTAGCTCTTTCAGATTCCTTGTAATTTCGTTTATGAATATGATGCAGGTAAGAATCCTCAACCTCTTTTACAGTCACCTCAAAAGTCCAGACTGTCATCATTGTCACCTACACCACACCACTATTCATCGTGATTATTATTCCCGTTTATATAATCTACTATTTTGTGCTCAAGTACTCCATTAAGAGTACCCGTCAACTTCAAAGAATCGCTTCGTTAACTCGTTCTCCAATATTTTCGAATTTCTCGGAGACCCTTCAAGGAATTTCAACAGTTAGAGCGTTCCAGTGGAATGATGAGTTTATCAGAAGAAATGATATGCATGTAAGCTAGCCGATTTTGAAATTTTCTATCTAAAATATTATTCTGTTTCAGCTCAACACCCATGTCAGATGCAACTACTACTCCCAAATGTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>132 122 92 89 87 78 66 54 51 37 36 30 27 25 18 18 12 12 6 3 3 2</canonical_bands>
                <polymorphic_bands>132 122 92 89 87 78 66 54 51 37 36 30 30 27 25 18 12 6 3 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAATTTCAGTGTTCTTCCTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTCTTACCTGCATCATATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAAAATTTCAGTGTTCTTCCTGTTCTTCTCCCTATCTCTCCTTCTGCTTGGAGGAGTCGCCGCTTCCAGAAATCTCCATAGACCATTGCTTCATAATGTGCTGAGAAACCCACTATCCTATTTTGATGTGACTCCTATTGGAAGAATTATCAACCGTCTCGCCAAAGACATGGAAGTTGTGGATCTCCGTTTGAGTAGCTCTTTCAGATTCCTTGTAATTTCGTTTATGAATATGATGCAGGTAAGAAT</canonical_amplicon>
		<polymorphic_amplicon>TAAAATTTCAGTGTTCTTCCTGTTCTTCTCCCTATCTCTCCTTCTGCTTGGAGGAGTCGCCGCTTCCAGAAATCTCCATAGACCATTGCTTCATAATGTGCTGAGAAACCCAYTATCCTATTTTGATGTGACTCCTATTGGAAGAATTATCAACCGTCTCGCCAAAGACATGGAAGTTGTGGATCTCCGTTTGAGTAGCTCTTTCAGATTCCTTGTAATTTCGTTTATGAATATGATGCAGGTAAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22280</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>248602</contig_pos>
        <strand>+</strand>
        <context>TCCGTTTGAG[C/T]AGCTCTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTATCAACCGTCTCGCCAAAGACATGGAAGTTGTGGATCTCCGTTTGAG</left_flank>
        <right_flank>AGCTCTTTCAGATTCCTTGTAATTTCGTTTATGAATATGATGCAGGTAAG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAACTTGCATTCACAATTTTTTTTGAAAATTCTTAGCTTTCAGCTCTTTTCCGATTTCCAAAAGAAACCTGTTTTTTCACGTTTTCAGTACAACAAATTGGGGAAATTCAGAAGTCAGAATAGCTAAAAAACTAAGAATTTTCAAAAAATTCTGCAAATGCAAAGTTTTCAATCTAGATCTGTTTTACATCCTCTAAAAGTTTTCAAAGTGATCGGAAACTTGACAGCCGAGCTCCAGACTCCTGAAAATGGTCAAAACAAATAAAAACCATTTGAAAATAAGAATGTGGGAAGCAAAAACTAAAATTTCAGTGTTCTTCCTGTTCTTCTCCCTATCTCTCCTTCTGCTTGGAGGAGTCGCCGCTTCCAGAAATCTCCATAGACCATTGCTTCATAATGTGCTGAGAAACCCACTATCCTATTTTGATGTGACTCCTATTGGAAGAATTATCAACCGTCTCGCCAAAGACATGGAAGTTGTGGATCTCCGTTTGAGTAGCTCTTTCAGATTCCTTGTAATTTCGTTTATGAATATGATGCAGGTAAGAATCCTCAACCTCTTTTACAGTCACCTCAAAAGTCCAGACTGTCATCATTGTCACCTACACCACACCACTATTCATCGTGATTATTATTCCCGTTTATATAATCTACTATTTTGTGCTCAAGTACTCCATTAAGAGTACCCGTCAACTTCAAAGAATCGCTTCGTTAACTCGTTCTCCAATATTTTCGAATTTCTCGGAGACCCTTCAAGGAATTTCAACAGTTAGAGCGTTCCAGTGGAATGATGAGTTTATCAGAAGAAATGATATGCATGTAAGCTAGCCGATTTTGAAATTTTCTATCTAAAATATTATTCTGTTTCAGCTCAACACCCATGTCAGATGCAACTACTACTCCCAAATGTCAAATCGCTGGTTGGCAATCCGTCTTGAACTTCTTGGAAACATTGTTATTTTTGGTAATTTCCAGGCTCTATTTTCATCATATCAAT</canonical>
            <polymorphic>TCAAAACTTGCATTCACAATTTTTTTTGAAAATTCTTAGCTTTCAGCTCTTTTCCGATTTCCAAAAGAAACCTGTTTTTTCACGTTTTCAGTACAACAAATTGGGGAAATTCAGAAGTCAGAATAGCTAAAAAACTAAGAATTTTCAAAAAATTCTGCAAATGCAAAGTTTTCAATCTAGATCTGTTTTACATCCTCTAAAAGTTTTCAAAGTGATCGGAAACTTGACAGCCGAGCTCCAGACTCCTGAAAATGGTCAAAACAAATAAAAACCATTTGAAAATAAGAATGTGGGAAGCAAAAACTAAAATTTCAGTGTTCTTCCTGTTCTTCTCCCTATCTCTCCTTCTGCTTGGAGGAGTCGCCGCTTCCAGAAATCTCCATAGACCATTGCTTCATAATGTGCTGAGAAACCCACTATCCTATTTTGATGTGACTCCTATTGGAAGAATTATCAACCGTCTCGCCAAAGACATGGAAGTTGTGGATCTCCGTTTGAGYAGCTCTTTCAGATTCCTTGTAATTTCGTTTATGAATATGATGCAGGTAAGAATCCTCAACCTCTTTTACAGTCACCTCAAAAGTCCAGACTGTCATCATTGTCACCTACACCACACCACTATTCATCGTGATTATTATTCCCGTTTATATAATCTACTATTTTGTGCTCAAGTACTCCATTAAGAGTACCCGTCAACTTCAAAGAATCGCTTCGTTAACTCGTTCTCCAATATTTTCGAATTTCTCGGAGACCCTTCAAGGAATTTCAACAGTTAGAGCGTTCCAGTGGAATGATGAGTTTATCAGAAGAAATGATATGCATGTAAGCTAGCCGATTTTGAAATTTTCTATCTAAAATATTATTCTGTTTCAGCTCAACACCCATGTCAGATGCAACTACTACTCCCAAATGTCAAATCGCTGGTTGGCAATCCGTCTTGAACTTCTTGGAAACATTGTTATTTTTGGTAATTTCCAGGCTCTATTTTCATCATATCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGACTCCTATTGGAAGAATTA</pcr_primer_p1>
		<pcr_primer_p2>ATGGAGTACTTGAGCACAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTGACTCCTATTGGAAGAATTATCAACCGTCTCGCCAAAGACATGGAAGTTGTGGATCTCCGTTTGAGTAGCTCTTTCAGATTCCTTGTAATTTCGTTTATGAATATGATGCAGGTAAGAATCCTCAACCTCTTTTACAGTCACCTCAAAAGTCCAGACTGTCATCATTGTCACCTACACCACACCACTATTCATCGTGATTATTATTCCCGTTTATATAATCTACTATTTTGTGCTCAAGTACTCCAT</canonical_amplicon>
		<polymorphic_amplicon>TGTGACTCCTATTGGAAGAATTATCAACCGTCTCGCCAAAGACATGGAAGTTGTGGATCTCCGTTTGAGYAGCTCTTTCAGATTCCTTGTAATTTCGTTTATGAATATGATGCAGGTAAGAATCCTCAACCTCTTTTACAGTCACCTCAAAAGTCCAGACTGTCATCATTGTCACCTACACCACACCACTATTCATCGTGATTATTATTCCCGTTTATATAATCTACTATTTTGTGCTCAAGTACTCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22281</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>248935</contig_pos>
        <strand>+</strand>
        <context>GTAAGCTAGC[C/T]GRTTTTGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAGTGGAATGATGAGTTTATCAGAAGAAATGATATGCATGTAAGCTAGC</left_flank>
        <right_flank>GATTTTGAAATTTTCTATCTAAAATATTATTCTGTTTCAGCTCAACACCC</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCTATCTCTCCTTCTGCTTGGAGGAGTCGCCGCTTCCAGAAATCTCCATAGACCATTGCTTCATAATGTGCTGAGAAACCCACTATCCTATTTTGATGTGACTCCTATTGGAAGAATTATCAACCGTCTCGCCAAAGACATGGAAGTTGTGGATCTCCGTTTGAGTAGCTCTTTCAGATTCCTTGTAATTTCGTTTATGAATATGATGCAGGTAAGAATCCTCAACCTCTTTTACAGTCACCTCAAAAGTCCAGACTGTCATCATTGTCACCTACACCACACCACTATTCATCGTGATTATTATTCCCGTTTATATAATCTACTATTTTGTGCTCAAGTACTCCATTAAGAGTACCCGTCAACTTCAAAGAATCGCTTCGTTAACTCGTTCTCCAATATTTTCGAATTTCTCGGAGACCCTTCAAGGAATTTCAACAGTTAGAGCGTTCCAGTGGAATGATGAGTTTATCAGAAGAAATGATATGCATGTAAGCTAGCCGATTTTGAAATTTTCTATCTAAAATATTATTCTGTTTCAGCTCAACACCCATGTCAGATGCAACTACTACTCCCAAATGTCAAATCGCTGGTTGGCAATCCGTCTTGAACTTCTTGGAAACATTGTTATTTTTGGTAATTTCCAGGCTCTATTTTCATCATATCAATTTTCTTTTAGCTGCTTCCATGTTAGCCATCTTTGGGAAAGAATCAGGATTGACTGCTGGTATGCTCGGTCTATCAGTGTCCTACAGTTTGAATGTAAGTTGCAAAAATTTTTTGAATAAAAAAAAATATATTTCAGATTACATTCATGTTGAATATGTTTGTTAGAACCATCAATGACGTAGAGACTAATGTGGTGTCAGTGGAAAGAATTGATGAGTACAGTAAGACCAAGAGTGAGGTAAGCAATTTCAATTGATTTGTTCAAAATACAGTCAGCTCTATTTCAGGCTGAGTGGCGTATGGAAGGATATGTGCTCCCGCAATCCTGGCCTA</canonical>
            <polymorphic>CCCTATCTCTCCTTCTGCTTGGAGGAGTCGCCGCTTCCAGAAATCTCCATAGACCATTGCTTCATAATGTGCTGAGAAACCCACTATCCTATTTTGATGTGACTCCTATTGGAAGAATTATCAACCGTCTCGCCAAAGACATGGAAGTTGTGGATCTCCGTTTGAGTAGCTCTTTCAGATTCCTTGTAATTTCGTTTATGAATATGATGCAGGTAAGAATCCTCAACCTCTTTTACAGTCACCTCAAAAGTCCAGACTGTCATCATTGTCACCTACACCACACCACTATTCATCGTGATTATTATTCCCGTTTATATAATCTACTATTTTGTGCTCAAGTACTCCATTAAGAGTACCCGTCAACTTCAAAGAATCGCTTCGTTAACTCGTTCTCCAATATTTTCGAATTTCTCGGAGACCCTTCAAGGAATTTCAACAGTTAGAGCGTTCCAGTGGAATGATGAGTTTATCAGAAGAAATGATATGCATGTAAGCTAGCYGATTTTGAAATTTTCTATCTAAAATATTATTCTGTTTCAGCTCAACACCCATGTCAGATGCAACTACTACTCCCAAATGTCAAATCGCTGGTTGGCAATCCGTCTTGAACTTCTTGGAAACATTGTTATTTTTGGTAATTTCCAGGCTCTATTTTCATCATATCAATTTTCTTTTAGCTGCTTCCATGTTAGCCATCTTTGGGAAAGAATCAGGATTGACTGCTGGTATGCTCGGTCTATCAGTGTCCTACAGTTTGAATGTAAGTTGCAAAAATTTTTTGAATAAAAAAAAATATATTTCAGATTACATTCATGTTGAATATGTTTGTTAGAACCATCAATGACGTAGAGACTAATGTGGTGTCAGTGGAAAGAATTGATGAGTACAGTAAGACCAAGAGTGAGGTAAGCAATTTCAATTGATTTGTTCAAAATACAGTCAGCTCTATTTCAGGCTGAGTGGCGTATGGAAGGATATGTGCTCCCGCAATCCTGGCCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>325 251 169 106 42 41 31 15 12 4 4</canonical_bands>
                <polymorphic_bands>325 251 169 106 46 41 31 15 12 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAACTCGTTCTCCAATATTTTC</pcr_primer_p1>
		<pcr_primer_p2>AAATAACAATGTTTCCAAGAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAACTCGTTCTCCAATATTTTCGAATTTCTCGGAGACCCTTCAAGGAATTTCAACAGTTAGAGCGTTCCAGTGGAATGATGAGTTTATCAGAAGAAATGATATGCATGTAAGCTAGCCGATTTTGAAATTTTCTATCTAAAATATTATTCTGTTTCAGCTCAACACCCATGTCAGATGCAACTACTACTCCCAAATGTCAAATCGCTGGTTGGCAATCCGTCTTGAACTTCTTGGAAACATTGTTATTT</canonical_amplicon>
		<polymorphic_amplicon>TTAACTCGTTCTCCAATATTTTCGAATTTCTCGGAGACCCTTCAAGGAATTTCAACAGTTAGAGCGTTCCAGTGGAATGATGAGTTTATCAGAAGAAATGATATGCATGTAAGCTAGCYGATTTTGAAATTTTCTATCTAAAATATTATTCTGTTTCAGCTCAACACCCATGTCAGATGCAACTACTACTCCCAAATGTCAAATCGCTGGTTGGCAATCCGTCTTGAACTTCTTGGAAACATTGTTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22282</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>250124</contig_pos>
        <strand>+</strand>
        <context>AAGCGACGAT[A/T]CGTGAAAAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCCACTGCTGGAATCGACAACAGAACCGATGCGATGGTTCAAGCGACGAT</left_flank>
        <right_flank>CGTGAAAAGTTTGCGGATTCCACGATCATCACAATTGCTCATAGACTGCA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGCTAGCACTCGCCCTTTTCCGTATTGTGGAAGCTGCAGAGGGGGATATTTCGATTGATCAAACAATTACTTCTCGTATTGGACTTCATGATTTGAGGGAGAAGTTGACTATCATCCCACAAGAAAATGTGTTGTTCGCTAATACATTGAGGTTTGCTTATAAATATTAGAATTTTTTACATATTAAGAATTCAGGTTTAATATTGATCCAAAGAGTCAGTTTAATGACCAACAACTTTGGGCAGCGCTTGAGAATTCAAATTTGAAGGCTCATGTAGAGACGTTGCCACAGAAGTTGGAAAGTCCAGTTGCGGAAGGAGGAGAAAACTTTAGGTAAGCACGAAAATTACAAACAAATCCAAATTTCGAATTTAGTGTTGGTCAACGGCAACTCTTGTGTCTCACACGCGCATTACTTCGAAAATCCAAAGTGTTGGTTCTGGATGAAGCCACTGCTGGAATCGACAACAGAACCGATGCGATGGTTCAAGCGACGATACGTGAAAAGTTTGCGGATTCCACGATCATCACAATTGCTCATAGACTGCACACTATTATGGACTATGATCGAATTATTGTGATGGAAGCTGGACGAATTGTGGAGGATGGTATTCCTGGAGAATTACTCAAAAACAAAAACTCAAAATTCTATGGTCTCGCTAAATCAGCTAAAATTGTTGGTTGATTGTTAGAAAGTTGTAATAAAATTGTTTTTATTAAATTAGTAAAGCAAAAATTAGACGGATGTTGAAGAGGTCCCCCAGAACCAAGTTCCGTTCGTCCATTGATACGCACAAGCAAACGTGTTATACTGAAAATTGCTATTGAGCTGCCATAAATGGGAAGTTGTATTGCAAGTGATATTTCCGTATATGGTGGTGGCCATTTCTGGAAAAGCCTGAAAATTACAGAAAACCATAAGAGAACCAAACGTGTTAGGAAATTGAAGCCTTGAATATTAGTGAACACAGGCAAATATCTATGAGCCCTGTTACGAAT</canonical>
            <polymorphic>TCGCTAGCACTCGCCCTTTTCCGTATTGTGGAAGCTGCAGAGGGGGATATTTCGATTGATCAAACAATTACTTCTCGTATTGGACTTCATGATTTGAGGGAGAAGTTGACTATCATCCCACAAGAAAATGTGTTGTTCGCTAATACATTGAGGTTTGCTTATAAATATTAGAATTTTTTACATATTAAGAATTCAGGTTTAATATTGATCCAAAGAGTCAGTTTAATGACCAACAACTTTGGGCAGCGCTTGAGAATTCAAATTTGAAGGCTCATGTAGAGACGTTGCCACAGAAGTTGGAAAGTCCAGTTGCGGAAGGAGGAGAAAACTTTAGGTAAGCACGAAAATTACAAACAAATCCAAATTTCGAATTTAGTGTTGGTCAACGGCAACTCTTGTGTCTCACACGCGCATTACTTCGAAAATCCAAAGTGTTGGTTCTGGATGAAGCCACTGCTGGAATCGACAACAGAACCGATGCGATGGTTCAAGCGACGATWCGTGAAAAGTTTGCGGATTCCACGATCATCACAATTGCTCATAGACTGCACACTATTATGGACTATGATCGAATTATTGTGATGGAAGCTGGACGAATTGTGGAGGATGGTATTCCTGGAGAATTACTCAAAAACAAAAACTCAAAATTCTATGGTCTCGCTAAATCAGCTAAAATTGTTGGTTGATTGTTAGAAAGTTGTAATAAAATTGTTTTTATTAAATTAGTAAAGCAAAAATTAGACGGATGTTGAAGAGGTCCCCCAGAACCAAGTTCCGTTCGTCCATTGATACGCACAAGCAAACGTGTTATACTGAAAATTGCTATTGAGCTGCCATAAATGGGAAGTTGTATTGCAAGTGATATTTCCGTATATGGTGGTGGCCATTTCTGGAAAAGCCTGAAAATTACAGAAAACCATAAGAGAACCAAACGTGTTAGGAAATTGAAGCCTTGAATATTAGTGAACACAGGCAAATATCTATGAGCCCTGTTACGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>303 282 218 129 68</canonical_bands>
                <polymorphic_bands>521 282 129 68</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTACTTCGAAAATCCAAAGTGT</pcr_primer_p1>
		<pcr_primer_p2>GAATTTTGAGTTTTTGTTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>ATTACTTCGAAAATCCAAAGTGTTGGTTCTGGATGAAGCCACTGCTGGAATCGACAACAGAACCGATGCGATGGTTCAAGCGACGATACGTGAAAAGTTTGCGGATTCCACGATCATCACAATTGCTCATAGACTGCACACTATTATGGACTATGATCGAATTATTGTGATGGAAGCTGGACGAATTGTGGAGGATGGTATTCCTGGAGAATTACTCAAAAACAAAAACTCAAAATTC</canonical_amplicon>
		<polymorphic_amplicon>ATTACTTCGAAAATCCAAAGTGTTGGTTCTGGATGAAGCCACTGCTGGAATCGACAACAGAACCGATGCGATGGTTCAAGCGACGATWCGTGAAAAGTTTGCGGATTCCACGATCATCACAATTGCTCATAGACTGCACACTATTATGGACTATGATCGAATTATTGTGATGGAAGCTGGACGAATTGTGGAGGATGGTATTCCTGGAGAATTACTCAAAAACAAAAACTCAAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22283</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>249974</contig_pos>
        <strand>+</strand>
        <context>CACGAAAATT[A/C]CAAACAAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAAGTCCAGTTGCGGAAGGAGGAGAAAACTTTAGGTAAGCACGAAAATT</left_flank>
        <right_flank>CAAACAAATCCAAATTTCGAATTTAGTGTTGGTCAACGGCAACTCTTGTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGAGATGAACTTGATCTGGTGCTCAAGCAAATCAGTCTTAACATCCTTCCAGGACAGAAGGTCGGAGTGTGTGGCAGAACTGGAGCAGGTATAAACCCCCGATTAGTCGATGACTTATAAAATAAAAATTAATACTCCAGGAAAATCTTCGCTAGCACTCGCCCTTTTCCGTATTGTGGAAGCTGCAGAGGGGGATATTTCGATTGATCAAACAATTACTTCTCGTATTGGACTTCATGATTTGAGGGAGAAGTTGACTATCATCCCACAAGAAAATGTGTTGTTCGCTAATACATTGAGGTTTGCTTATAAATATTAGAATTTTTTACATATTAAGAATTCAGGTTTAATATTGATCCAAAGAGTCAGTTTAATGACCAACAACTTTGGGCAGCGCTTGAGAATTCAAATTTGAAGGCTCATGTAGAGACGTTGCCACAGAAGTTGGAAAGTCCAGTTGCGGAAGGAGGAGAAAACTTTAGGTAAGCACGAAAATTACAAACAAATCCAAATTTCGAATTTAGTGTTGGTCAACGGCAACTCTTGTGTCTCACACGCGCATTACTTCGAAAATCCAAAGTGTTGGTTCTGGATGAAGCCACTGCTGGAATCGACAACAGAACCGATGCGATGGTTCAAGCGACGATACGTGAAAAGTTTGCGGATTCCACGATCATCACAATTGCTCATAGACTGCACACTATTATGGACTATGATCGAATTATTGTGATGGAAGCTGGACGAATTGTGGAGGATGGTATTCCTGGAGAATTACTCAAAAACAAAAACTCAAAATTCTATGGTCTCGCTAAATCAGCTAAAATTGTTGGTTGATTGTTAGAAAGTTGTAATAAAATTGTTTTTATTAAATTAGTAAAGCAAAAATTAGACGGATGTTGAAGAGGTCCCCCAGAACCAAGTTCCGTTCGTCCATTGATACGCACAAGCAAACGTGTTATACTGAAAATTGCTATTGAGCTGCCATAAATGGGAAGTTG</canonical>
            <polymorphic>ATCGAGATGAACTTGATCTGGTGCTCAAGCAAATCAGTCTTAACATCCTTCCAGGACAGAAGGTCGGAGTGTGTGGCAGAACTGGAGCAGGTATAAACCCCCGATTAGTCGATGACTTATAAAATAAAAATTAATACTCCAGGAAAATCTTCGCTAGCACTCGCCCTTTTCCGTATTGTGGAAGCTGCAGAGGGGGATATTTCGATTGATCAAACAATTACTTCTCGTATTGGACTTCATGATTTGAGGGAGAAGTTGACTATCATCCCACAAGAAAATGTGTTGTTCGCTAATACATTGAGGTTTGCTTATAAATATTAGAATTTTTTACATATTAAGAATTCAGGTTTAATATTGATCCAAAGAGTCAGTTTAATGACCAACAACTTTGGGCAGCGCTTGAGAATTCAAATTTGAAGGCTCATGTAGAGACGTTGCCACAGAAGTTGGAAAGTCCAGTTGCGGAAGGAGGAGAAAACTTTAGGTAAGCACGAAAATTMCAAACAAATCCAAATTTCGAATTTAGTGTTGGTCAACGGCAACTCTTGTGTCTCACACGCGCATTACTTCGAAAATCCAAAGTGTTGGTTCTGGATGAAGCCACTGCTGGAATCGACAACAGAACCGATGCGATGGTTCAAGCGACGATACGTGAAAAGTTTGCGGATTCCACGATCATCACAATTGCTCATAGACTGCACACTATTATGGACTATGATCGAATTATTGTGATGGAAGCTGGACGAATTGTGGAGGATGGTATTCCTGGAGAATTACTCAAAAACAAAAACTCAAAATTCTATGGTCTCGCTAAATCAGCTAAAATTGTTGGTTGATTGTTAGAAAGTTGTAATAAAATTGTTTTTATTAAATTAGTAAAGCAAAAATTAGACGGATGTTGAAGAGGTCCCCCAGAACCAAGTTCCGTTCGTCCATTGATACGCACAAGCAAACGTGTTATACTGAAAATTGCTATTGAGCTGCCATAAATGGGAAGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGGTTTAATATTGATCCAAAG</pcr_primer_p1>
		<pcr_primer_p2>ACACTTTGGATTTTCGAAGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TCAGGTTTAATATTGATCCAAAGAGTCAGTTTAATGACCAACAACTTTGGGCAGCGCTTGAGAATTCAAATTTGAAGGCTCATGTAGAGACGTTGCCACAGAAGTTGGAAAGTCCAGTTGCGGAAGGAGGAGAAAACTTTAGGTAAGCACGAAAATTACAAACAAATCCAAATTTCGAATTTAGTGTTGGTCAACGGCAACTCTTGTGTCTCACACGCGCATTACTTCGAAAATCCAAAGTGT</canonical_amplicon>
		<polymorphic_amplicon>TCAGGTTTAATATTGATCCAAAGAGTCAGTTTAATGACCAACAACTTTGGGCAGCGCTTGAGAATTCAAATTTGAAGGCTCATGTAGAGACGTTGCCACAGAAGTTGGAAAGTCCAGTTGCGGAAGGAGGAGAAAACTTTAGGTAAGCACGAAAATTMCAAACAAATCCAAATTTCGAATTTAGTGTTGGTCAACGGCAACTCTTGTGTCTCACACGCGCATTACTTCGAAAATCCAAAGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22284</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>249950</contig_pos>
        <strand>+</strand>
        <context>AAGGAGGAGA[A/G]AACTTTAGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAGAGACGTTGCCACAGAAGTTGGAAAGTCCAGTTGCGGAAGGAGGAGA</left_flank>
        <right_flank>AACTTTAGGTAAGCACGAAAATTACAAACAAATCCAAATTTCGAATTTAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATTGAAGACTACTCATGCAGATATCGAGATGAACTTGATCTGGTGCTCAAGCAAATCAGTCTTAACATCCTTCCAGGACAGAAGGTCGGAGTGTGTGGCAGAACTGGAGCAGGTATAAACCCCCGATTAGTCGATGACTTATAAAATAAAAATTAATACTCCAGGAAAATCTTCGCTAGCACTCGCCCTTTTCCGTATTGTGGAAGCTGCAGAGGGGGATATTTCGATTGATCAAACAATTACTTCTCGTATTGGACTTCATGATTTGAGGGAGAAGTTGACTATCATCCCACAAGAAAATGTGTTGTTCGCTAATACATTGAGGTTTGCTTATAAATATTAGAATTTTTTACATATTAAGAATTCAGGTTTAATATTGATCCAAAGAGTCAGTTTAATGACCAACAACTTTGGGCAGCGCTTGAGAATTCAAATTTGAAGGCTCATGTAGAGACGTTGCCACAGAAGTTGGAAAGTCCAGTTGCGGAAGGAGGAGAAAACTTTAGGTAAGCACGAAAATTACAAACAAATCCAAATTTCGAATTTAGTGTTGGTCAACGGCAACTCTTGTGTCTCACACGCGCATTACTTCGAAAATCCAAAGTGTTGGTTCTGGATGAAGCCACTGCTGGAATCGACAACAGAACCGATGCGATGGTTCAAGCGACGATACGTGAAAAGTTTGCGGATTCCACGATCATCACAATTGCTCATAGACTGCACACTATTATGGACTATGATCGAATTATTGTGATGGAAGCTGGACGAATTGTGGAGGATGGTATTCCTGGAGAATTACTCAAAAACAAAAACTCAAAATTCTATGGTCTCGCTAAATCAGCTAAAATTGTTGGTTGATTGTTAGAAAGTTGTAATAAAATTGTTTTTATTAAATTAGTAAAGCAAAAATTAGACGGATGTTGAAGAGGTCCCCCAGAACCAAGTTCCGTTCGTCCATTGATACGCACAAGCAAACGTGTTATACTGAAAATTGCTAT</canonical>
            <polymorphic>ATATTGAAGACTACTCATGCAGATATCGAGATGAACTTGATCTGGTGCTCAAGCAAATCAGTCTTAACATCCTTCCAGGACAGAAGGTCGGAGTGTGTGGCAGAACTGGAGCAGGTATAAACCCCCGATTAGTCGATGACTTATAAAATAAAAATTAATACTCCAGGAAAATCTTCGCTAGCACTCGCCCTTTTCCGTATTGTGGAAGCTGCAGAGGGGGATATTTCGATTGATCAAACAATTACTTCTCGTATTGGACTTCATGATTTGAGGGAGAAGTTGACTATCATCCCACAAGAAAATGTGTTGTTCGCTAATACATTGAGGTTTGCTTATAAATATTAGAATTTTTTACATATTAAGAATTCAGGTTTAATATTGATCCAAAGAGTCAGTTTAATGACCAACAACTTTGGGCAGCGCTTGAGAATTCAAATTTGAAGGCTCATGTAGAGACGTTGCCACAGAAGTTGGAAAGTCCAGTTGCGGAAGGAGGAGARAACTTTAGGTAAGCACGAAAATTACAAACAAATCCAAATTTCGAATTTAGTGTTGGTCAACGGCAACTCTTGTGTCTCACACGCGCATTACTTCGAAAATCCAAAGTGTTGGTTCTGGATGAAGCCACTGCTGGAATCGACAACAGAACCGATGCGATGGTTCAAGCGACGATACGTGAAAAGTTTGCGGATTCCACGATCATCACAATTGCTCATAGACTGCACACTATTATGGACTATGATCGAATTATTGTGATGGAAGCTGGACGAATTGTGGAGGATGGTATTCCTGGAGAATTACTCAAAAACAAAAACTCAAAATTCTATGGTCTCGCTAAATCAGCTAAAATTGTTGGTTGATTGTTAGAAAGTTGTAATAAAATTGTTTTTATTAAATTAGTAAAGCAAAAATTAGACGGATGTTGAAGAGGTCCCCCAGAACCAAGTTCCGTTCGTCCATTGATACGCACAAGCAAACGTGTTATACTGAAAATTGCTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGGTTTAATATTGATCCAAAG</pcr_primer_p1>
		<pcr_primer_p2>ACACTTTGGATTTTCGAAGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TCAGGTTTAATATTGATCCAAAGAGTCAGTTTAATGACCAACAACTTTGGGCAGCGCTTGAGAATTCAAATTTGAAGGCTCATGTAGAGACGTTGCCACAGAAGTTGGAAAGTCCAGTTGCGGAAGGAGGAGAAAACTTTAGGTAAGCACGAAAATTACAAACAAATCCAAATTTCGAATTTAGTGTTGGTCAACGGCAACTCTTGTGTCTCACACGCGCATTACTTCGAAAATCCAAAGTGT</canonical_amplicon>
		<polymorphic_amplicon>TCAGGTTTAATATTGATCCAAAGAGTCAGTTTAATGACCAACAACTTTGGGCAGCGCTTGAGAATTCAAATTTGAAGGCTCATGTAGAGACGTTGCCACAGAAGTTGGAAAGTCCAGTTGCGGAAGGAGGAGARAACTTTAGGTAAGCACGAAAATTACAAACAAATCCAAATTTCGAATTTAGTGTTGGTCAACGGCAACTCTTGTGTCTCACACGCGCATTACTTCGAAAATCCAAAGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22285</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>249867</contig_pos>
        <strand>+</strand>
        <context>ACAACTTTGG[A/G]CAGCGCTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAGGTTTAATATTGATCCAAAGAGTCAGTTTAATGACCAACAACTTTGG</left_flank>
        <right_flank>CAGCGCTTGAGAATTCAAATTTGAAGGCTCATGTAGAGACGTTGCCACAG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATACAGTCAGCTCTATTTCAGGCTGAGTGGCGTATGGAAGGATATGTGCTCCCGCAATCCTGGCCTATCGGAGGTGCTGTGAATATTGAAGACTACTCATGCAGATATCGAGATGAACTTGATCTGGTGCTCAAGCAAATCAGTCTTAACATCCTTCCAGGACAGAAGGTCGGAGTGTGTGGCAGAACTGGAGCAGGTATAAACCCCCGATTAGTCGATGACTTATAAAATAAAAATTAATACTCCAGGAAAATCTTCGCTAGCACTCGCCCTTTTCCGTATTGTGGAAGCTGCAGAGGGGGATATTTCGATTGATCAAACAATTACTTCTCGTATTGGACTTCATGATTTGAGGGAGAAGTTGACTATCATCCCACAAGAAAATGTGTTGTTCGCTAATACATTGAGGTTTGCTTATAAATATTAGAATTTTTTACATATTAAGAATTCAGGTTTAATATTGATCCAAAGAGTCAGTTTAATGACCAACAACTTTGGGCAGCGCTTGAGAATTCAAATTTGAAGGCTCATGTAGAGACGTTGCCACAGAAGTTGGAAAGTCCAGTTGCGGAAGGAGGAGAAAACTTTAGGTAAGCACGAAAATTACAAACAAATCCAAATTTCGAATTTAGTGTTGGTCAACGGCAACTCTTGTGTCTCACACGCGCATTACTTCGAAAATCCAAAGTGTTGGTTCTGGATGAAGCCACTGCTGGAATCGACAACAGAACCGATGCGATGGTTCAAGCGACGATACGTGAAAAGTTTGCGGATTCCACGATCATCACAATTGCTCATAGACTGCACACTATTATGGACTATGATCGAATTATTGTGATGGAAGCTGGACGAATTGTGGAGGATGGTATTCCTGGAGAATTACTCAAAAACAAAAACTCAAAATTCTATGGTCTCGCTAAATCAGCTAAAATTGTTGGTTGATTGTTAGAAAGTTGTAATAAAATTGTTTTTATTAAATTAGTAAAGCAAAAATTAGAC</canonical>
            <polymorphic>AATACAGTCAGCTCTATTTCAGGCTGAGTGGCGTATGGAAGGATATGTGCTCCCGCAATCCTGGCCTATCGGAGGTGCTGTGAATATTGAAGACTACTCATGCAGATATCGAGATGAACTTGATCTGGTGCTCAAGCAAATCAGTCTTAACATCCTTCCAGGACAGAAGGTCGGAGTGTGTGGCAGAACTGGAGCAGGTATAAACCCCCGATTAGTCGATGACTTATAAAATAAAAATTAATACTCCAGGAAAATCTTCGCTAGCACTCGCCCTTTTCCGTATTGTGGAAGCTGCAGAGGGGGATATTTCGATTGATCAAACAATTACTTCTCGTATTGGACTTCATGATTTGAGGGAGAAGTTGACTATCATCCCACAAGAAAATGTGTTGTTCGCTAATACATTGAGGTTTGCTTATAAATATTAGAATTTTTTACATATTAAGAATTCAGGTTTAATATTGATCCAAAGAGTCAGTTTAATGACCAACAACTTTGGRCAGCGCTTGAGAATTCAAATTTGAAGGCTCATGTAGAGACGTTGCCACAGAAGTTGGAAAGTCCAGTTGCGGAAGGAGGAGAAAACTTTAGGTAAGCACGAAAATTACAAACAAATCCAAATTTCGAATTTAGTGTTGGTCAACGGCAACTCTTGTGTCTCACACGCGCATTACTTCGAAAATCCAAAGTGTTGGTTCTGGATGAAGCCACTGCTGGAATCGACAACAGAACCGATGCGATGGTTCAAGCGACGATACGTGAAAAGTTTGCGGATTCCACGATCATCACAATTGCTCATAGACTGCACACTATTATGGACTATGATCGAATTATTGTGATGGAAGCTGGACGAATTGTGGAGGATGGTATTCCTGGAGAATTACTCAAAAACAAAAACTCAAAATTCTATGGTCTCGCTAAATCAGCTAAAATTGTTGGTTGATTGTTAGAAAGTTGTAATAAAATTGTTTTTATTAAATTAGTAAAGCAAAAATTAGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>497 294 209</canonical_bands>
                <polymorphic_bands>706 294</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>500 291 209</canonical_bands>
                <polymorphic_bands>709 291</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTGACTATCATCCCACAAG</pcr_primer_p1>
		<pcr_primer_p2>AATTTTCGTGCTTACCTAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAGTTGACTATCATCCCACAAGAAAATGTGTTGTTCGCTAATACATTGAGGTTTGCTTATAAATATTAGAATTTTTTACATATTAAGAATTCAGGTTTAATATTGATCCAAAGAGTCAGTTTAATGACCAACAACTTTGGGCAGCGCTTGAGAATTCAAATTTGAAGGCTCATGTAGAGACGTTGCCACAGAAGTTGGAAAGTCCAGTTGCGGAAGGAGGAGAAAACTTTAGGTAAGCACGAAAATT</canonical_amplicon>
		<polymorphic_amplicon>AAGTTGACTATCATCCCACAAGAAAATGTGTTGTTCGCTAATACATTGAGGTTTGCTTATAAATATTAGAATTTTTTACATATTAAGAATTCAGGTTTAATATTGATCCAAAGAGTCAGTTTAATGACCAACAACTTTGGRCAGCGCTTGAGAATTCAAATTTGAAGGCTCATGTAGAGACGTTGCCACAGAAGTTGGAAAGTCCAGTTGCGGAAGGAGGAGAAAACTTTAGGTAAGCACGAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22286</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>249813</contig_pos>
        <strand>+</strand>
        <context>TACATATTAA[C/G]AATTCAGGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCTAATACATTGAGGTTTGCTTATAAATATTAGAATTTTTTACATATTAA</left_flank>
        <right_flank>AATTCAGGTTTAATATTGATCCAAAGAGTCAGTTTAATGACCAACAACTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGAGTACAGTAAGACCAAGAGTGAGGTAAGCAATTTCAATTGATTTGTTCAAAATACAGTCAGCTCTATTTCAGGCTGAGTGGCGTATGGAAGGATATGTGCTCCCGCAATCCTGGCCTATCGGAGGTGCTGTGAATATTGAAGACTACTCATGCAGATATCGAGATGAACTTGATCTGGTGCTCAAGCAAATCAGTCTTAACATCCTTCCAGGACAGAAGGTCGGAGTGTGTGGCAGAACTGGAGCAGGTATAAACCCCCGATTAGTCGATGACTTATAAAATAAAAATTAATACTCCAGGAAAATCTTCGCTAGCACTCGCCCTTTTCCGTATTGTGGAAGCTGCAGAGGGGGATATTTCGATTGATCAAACAATTACTTCTCGTATTGGACTTCATGATTTGAGGGAGAAGTTGACTATCATCCCACAAGAAAATGTGTTGTTCGCTAATACATTGAGGTTTGCTTATAAATATTAGAATTTTTTACATATTAAGAATTCAGGTTTAATATTGATCCAAAGAGTCAGTTTAATGACCAACAACTTTGGGCAGCGCTTGAGAATTCAAATTTGAAGGCTCATGTAGAGACGTTGCCACAGAAGTTGGAAAGTCCAGTTGCGGAAGGAGGAGAAAACTTTAGGTAAGCACGAAAATTACAAACAAATCCAAATTTCGAATTTAGTGTTGGTCAACGGCAACTCTTGTGTCTCACACGCGCATTACTTCGAAAATCCAAAGTGTTGGTTCTGGATGAAGCCACTGCTGGAATCGACAACAGAACCGATGCGATGGTTCAAGCGACGATACGTGAAAAGTTTGCGGATTCCACGATCATCACAATTGCTCATAGACTGCACACTATTATGGACTATGATCGAATTATTGTGATGGAAGCTGGACGAATTGTGGAGGATGGTATTCCTGGAGAATTACTCAAAAACAAAAACTCAAAATTCTATGGTCTCGCTAAATCAGCTAAAATTGTTGGTTGATTG</canonical>
            <polymorphic>GATGAGTACAGTAAGACCAAGAGTGAGGTAAGCAATTTCAATTGATTTGTTCAAAATACAGTCAGCTCTATTTCAGGCTGAGTGGCGTATGGAAGGATATGTGCTCCCGCAATCCTGGCCTATCGGAGGTGCTGTGAATATTGAAGACTACTCATGCAGATATCGAGATGAACTTGATCTGGTGCTCAAGCAAATCAGTCTTAACATCCTTCCAGGACAGAAGGTCGGAGTGTGTGGCAGAACTGGAGCAGGTATAAACCCCCGATTAGTCGATGACTTATAAAATAAAAATTAATACTCCAGGAAAATCTTCGCTAGCACTCGCCCTTTTCCGTATTGTGGAAGCTGCAGAGGGGGATATTTCGATTGATCAAACAATTACTTCTCGTATTGGACTTCATGATTTGAGGGAGAAGTTGACTATCATCCCACAAGAAAATGTGTTGTTCGCTAATACATTGAGGTTTGCTTATAAATATTAGAATTTTTTACATATTAASAATTCAGGTTTAATATTGATCCAAAGAGTCAGTTTAATGACCAACAACTTTGGGCAGCGCTTGAGAATTCAAATTTGAAGGCTCATGTAGAGACGTTGCCACAGAAGTTGGAAAGTCCAGTTGCGGAAGGAGGAGAAAACTTTAGGTAAGCACGAAAATTACAAACAAATCCAAATTTCGAATTTAGTGTTGGTCAACGGCAACTCTTGTGTCTCACACGCGCATTACTTCGAAAATCCAAAGTGTTGGTTCTGGATGAAGCCACTGCTGGAATCGACAACAGAACCGATGCGATGGTTCAAGCGACGATACGTGAAAAGTTTGCGGATTCCACGATCATCACAATTGCTCATAGACTGCACACTATTATGGACTATGATCGAATTATTGTGATGGAAGCTGGACGAATTGTGGAGGATGGTATTCCTGGAGAATTACTCAAAAACAAAAACTCAAAATTCTATGGTCTCGCTAAATCAGCTAAAATTGTTGGTTGATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>482 276 102 65 44 18 7 6</canonical_bands>
                <polymorphic_bands>482 276 102 83 44 7 6</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>500 435 65</canonical_bands>
                <polymorphic_bands>565 435</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTGACTATCATCCCACAAG</pcr_primer_p1>
		<pcr_primer_p2>AATTTTCGTGCTTACCTAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAGTTGACTATCATCCCACAAGAAAATGTGTTGTTCGCTAATACATTGAGGTTTGCTTATAAATATTAGAATTTTTTACATATTAAGAATTCAGGTTTAATATTGATCCAAAGAGTCAGTTTAATGACCAACAACTTTGGGCAGCGCTTGAGAATTCAAATTTGAAGGCTCATGTAGAGACGTTGCCACAGAAGTTGGAAAGTCCAGTTGCGGAAGGAGGAGAAAACTTTAGGTAAGCACGAAAATT</canonical_amplicon>
		<polymorphic_amplicon>AAGTTGACTATCATCCCACAAGAAAATGTGTTGTTCGCTAATACATTGAGGTTTGCTTATAAATATTAGAATTTTTTACATATTAASAATTCAGGTTTAATATTGATCCAAAGAGTCAGTTTAATGACCAACAACTTTGGGCAGCGCTTGAGAATTCAAATTTGAAGGCTCATGTAGAGACGTTGCCACAGAAGTTGGAAAGTCCAGTTGCGGAAGGAGGAGAAAACTTTAGGTAAGCACGAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22287</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>249756</contig_pos>
        <strand>+</strand>
        <context>AAGAAAATGT[C/G]TTGTTCGCTA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGACTTCATGATTTGAGGGAGAAGTTGACTATCATCCCACAAGAAAATGT</left_flank>
        <right_flank>TTGTTCGCTAATACATTGAGGTTTGCTTATAAATATTAGAATTTTTTACA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTTTGTTAGAACCATCAATGACGTAGAGACTAATGTGGTGTCAGTGGAAAGAATTGATGAGTACAGTAAGACCAAGAGTGAGGTAAGCAATTTCAATTGATTTGTTCAAAATACAGTCAGCTCTATTTCAGGCTGAGTGGCGTATGGAAGGATATGTGCTCCCGCAATCCTGGCCTATCGGAGGTGCTGTGAATATTGAAGACTACTCATGCAGATATCGAGATGAACTTGATCTGGTGCTCAAGCAAATCAGTCTTAACATCCTTCCAGGACAGAAGGTCGGAGTGTGTGGCAGAACTGGAGCAGGTATAAACCCCCGATTAGTCGATGACTTATAAAATAAAAATTAATACTCCAGGAAAATCTTCGCTAGCACTCGCCCTTTTCCGTATTGTGGAAGCTGCAGAGGGGGATATTTCGATTGATCAAACAATTACTTCTCGTATTGGACTTCATGATTTGAGGGAGAAGTTGACTATCATCCCACAAGAAAATGTGTTGTTCGCTAATACATTGAGGTTTGCTTATAAATATTAGAATTTTTTACATATTAAGAATTCAGGTTTAATATTGATCCAAAGAGTCAGTTTAATGACCAACAACTTTGGGCAGCGCTTGAGAATTCAAATTTGAAGGCTCATGTAGAGACGTTGCCACAGAAGTTGGAAAGTCCAGTTGCGGAAGGAGGAGAAAACTTTAGGTAAGCACGAAAATTACAAACAAATCCAAATTTCGAATTTAGTGTTGGTCAACGGCAACTCTTGTGTCTCACACGCGCATTACTTCGAAAATCCAAAGTGTTGGTTCTGGATGAAGCCACTGCTGGAATCGACAACAGAACCGATGCGATGGTTCAAGCGACGATACGTGAAAAGTTTGCGGATTCCACGATCATCACAATTGCTCATAGACTGCACACTATTATGGACTATGATCGAATTATTGTGATGGAAGCTGGACGAATTGTGGAGGATGGTATTCCTGGAGAATTACTCAAA</canonical>
            <polymorphic>ATGTTTGTTAGAACCATCAATGACGTAGAGACTAATGTGGTGTCAGTGGAAAGAATTGATGAGTACAGTAAGACCAAGAGTGAGGTAAGCAATTTCAATTGATTTGTTCAAAATACAGTCAGCTCTATTTCAGGCTGAGTGGCGTATGGAAGGATATGTGCTCCCGCAATCCTGGCCTATCGGAGGTGCTGTGAATATTGAAGACTACTCATGCAGATATCGAGATGAACTTGATCTGGTGCTCAAGCAAATCAGTCTTAACATCCTTCCAGGACAGAAGGTCGGAGTGTGTGGCAGAACTGGAGCAGGTATAAACCCCCGATTAGTCGATGACTTATAAAATAAAAATTAATACTCCAGGAAAATCTTCGCTAGCACTCGCCCTTTTCCGTATTGTGGAAGCTGCAGAGGGGGATATTTCGATTGATCAAACAATTACTTCTCGTATTGGACTTCATGATTTGAGGGAGAAGTTGACTATCATCCCACAAGAAAATGTSTTGTTCGCTAATACATTGAGGTTTGCTTATAAATATTAGAATTTTTTACATATTAAGAATTCAGGTTTAATATTGATCCAAAGAGTCAGTTTAATGACCAACAACTTTGGGCAGCGCTTGAGAATTCAAATTTGAAGGCTCATGTAGAGACGTTGCCACAGAAGTTGGAAAGTCCAGTTGCGGAAGGAGGAGAAAACTTTAGGTAAGCACGAAAATTACAAACAAATCCAAATTTCGAATTTAGTGTTGGTCAACGGCAACTCTTGTGTCTCACACGCGCATTACTTCGAAAATCCAAAGTGTTGGTTCTGGATGAAGCCACTGCTGGAATCGACAACAGAACCGATGCGATGGTTCAAGCGACGATACGTGAAAAGTTTGCGGATTCCACGATCATCACAATTGCTCATAGACTGCACACTATTATGGACTATGATCGAATTATTGTGATGGAAGCTGGACGAATTGTGGAGGATGGTATTCCTGGAGAATTACTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>158 90 84 59 51 51 48 48 39 37 34 30 29 28 27 22 21 21 19 19 19 18 12 9 6 5 5 3 2 2 2 2</canonical_bands>
                <polymorphic_bands>170 90 84 59 51 51 48 48 39 37 34 30 29 28 27 22 21 21 19 19 19 18 9 6 5 5 3 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTAATACTCCAGGAAAATC</pcr_primer_p1>
		<pcr_primer_p2>TTAAACTGACTCTTTGGATCAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTAATACTCCAGGAAAATCTTCGCTAGCACTCGCCCTTTTCCGTATTGTGGAAGCTGCAGAGGGGGATATTTCGATTGATCAAACAATTACTTCTCGTATTGGACTTCATGATTTGAGGGAGAAGTTGACTATCATCCCACAAGAAAATGTGTTGTTCGCTAATACATTGAGGTTTGCTTATAAATATTAGAATTTTTTACATATTAAGAATTCAGGTTTAATATTGATCCAAAGAGTCAGTTTAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTAATACTCCAGGAAAATCTTCGCTAGCACTCGCCCTTTTCCGTATTGTGGAAGCTGCAGAGGGGGATATTTCGATTGATCAAACAATTACTTCTCGTATTGGACTTCATGATTTGAGGGAGAAGTTGACTATCATCCCACAAGAAAATGTSTTGTTCGCTAATACATTGAGGTTTGCTTATAAATATTAGAATTTTTTACATATTAAGAATTCAGGTTTAATATTGATCCAAAGAGTCAGTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22288</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>249670</contig_pos>
        <strand>+</strand>
        <context>TGCAGAGGGG[A/G]ATATTTCGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCTTCGCTAGCACTCGCCCTTTTCCGTATTGTGGAAGCTGCAGAGGGG</left_flank>
        <right_flank>ATATTTCGATTGATCAAACAATTACTTCTCGTATTGGACTTCATGATTTG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTATCAGTGTCCTACAGTTTGAATGTAAGTTGCAAAAATTTTTTGAATAAAAAAAAATATATTTCAGATTACATTCATGTTGAATATGTTTGTTAGAACCATCAATGACGTAGAGACTAATGTGGTGTCAGTGGAAAGAATTGATGAGTACAGTAAGACCAAGAGTGAGGTAAGCAATTTCAATTGATTTGTTCAAAATACAGTCAGCTCTATTTCAGGCTGAGTGGCGTATGGAAGGATATGTGCTCCCGCAATCCTGGCCTATCGGAGGTGCTGTGAATATTGAAGACTACTCATGCAGATATCGAGATGAACTTGATCTGGTGCTCAAGCAAATCAGTCTTAACATCCTTCCAGGACAGAAGGTCGGAGTGTGTGGCAGAACTGGAGCAGGTATAAACCCCCGATTAGTCGATGACTTATAAAATAAAAATTAATACTCCAGGAAAATCTTCGCTAGCACTCGCCCTTTTCCGTATTGTGGAAGCTGCAGAGGGGGATATTTCGATTGATCAAACAATTACTTCTCGTATTGGACTTCATGATTTGAGGGAGAAGTTGACTATCATCCCACAAGAAAATGTGTTGTTCGCTAATACATTGAGGTTTGCTTATAAATATTAGAATTTTTTACATATTAAGAATTCAGGTTTAATATTGATCCAAAGAGTCAGTTTAATGACCAACAACTTTGGGCAGCGCTTGAGAATTCAAATTTGAAGGCTCATGTAGAGACGTTGCCACAGAAGTTGGAAAGTCCAGTTGCGGAAGGAGGAGAAAACTTTAGGTAAGCACGAAAATTACAAACAAATCCAAATTTCGAATTTAGTGTTGGTCAACGGCAACTCTTGTGTCTCACACGCGCATTACTTCGAAAATCCAAAGTGTTGGTTCTGGATGAAGCCACTGCTGGAATCGACAACAGAACCGATGCGATGGTTCAAGCGACGATACGTGAAAAGTTTGCGGATTCCACGATCATCACAATTGCTCATAGAC</canonical>
            <polymorphic>TCTATCAGTGTCCTACAGTTTGAATGTAAGTTGCAAAAATTTTTTGAATAAAAAAAAATATATTTCAGATTACATTCATGTTGAATATGTTTGTTAGAACCATCAATGACGTAGAGACTAATGTGGTGTCAGTGGAAAGAATTGATGAGTACAGTAAGACCAAGAGTGAGGTAAGCAATTTCAATTGATTTGTTCAAAATACAGTCAGCTCTATTTCAGGCTGAGTGGCGTATGGAAGGATATGTGCTCCCGCAATCCTGGCCTATCGGAGGTGCTGTGAATATTGAAGACTACTCATGCAGATATCGAGATGAACTTGATCTGGTGCTCAAGCAAATCAGTCTTAACATCCTTCCAGGACAGAAGGTCGGAGTGTGTGGCAGAACTGGAGCAGGTATAAACCCCCGATTAGTCGATGACTTATAAAATAAAAATTAATACTCCAGGAAAATCTTCGCTAGCACTCGCCCTTTTCCGTATTGTGGAAGCTGCAGAGGGGRATATTTCGATTGATCAAACAATTACTTCTCGTATTGGACTTCATGATTTGAGGGAGAAGTTGACTATCATCCCACAAGAAAATGTGTTGTTCGCTAATACATTGAGGTTTGCTTATAAATATTAGAATTTTTTACATATTAAGAATTCAGGTTTAATATTGATCCAAAGAGTCAGTTTAATGACCAACAACTTTGGGCAGCGCTTGAGAATTCAAATTTGAAGGCTCATGTAGAGACGTTGCCACAGAAGTTGGAAAGTCCAGTTGCGGAAGGAGGAGAAAACTTTAGGTAAGCACGAAAATTACAAACAAATCCAAATTTCGAATTTAGTGTTGGTCAACGGCAACTCTTGTGTCTCACACGCGCATTACTTCGAAAATCCAAAGTGTTGGTTCTGGATGAAGCCACTGCTGGAATCGACAACAGAACCGATGCGATGGTTCAAGCGACGATACGTGAAAAGTTTGCGGATTCCACGATCATCACAATTGCTCATAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAAGCAAATCAGTCTTAACAT</pcr_primer_p1>
		<pcr_primer_p2>CTTGTGGGATGATAGTCAACTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTCAAGCAAATCAGTCTTAACATCCTTCCAGGACAGAAGGTCGGAGTGTGTGGCAGAACTGGAGCAGGTATAAACCCCCGATTAGTCGATGACTTATAAAATAAAAATTAATACTCCAGGAAAATCTTCGCTAGCACTCGCCCTTTTCCGTATTGTGGAAGCTGCAGAGGGGGATATTTCGATTGATCAAACAATTACTTCTCGTATTGGACTTCATGATTTGAGGGAGAAGTTGACTATCATCCCACAAG</canonical_amplicon>
		<polymorphic_amplicon>CTCAAGCAAATCAGTCTTAACATCCTTCCAGGACAGAAGGTCGGAGTGTGTGGCAGAACTGGAGCAGGTATAAACCCCCGATTAGTCGATGACTTATAAAATAAAAATTAATACTCCAGGAAAATCTTCGCTAGCACTCGCCCTTTTCCGTATTGTGGAAGCTGCAGAGGGGRATATTTCGATTGATCAAACAATTACTTCTCGTATTGGACTTCATGATTTGAGGGAGAAGTTGACTATCATCCCACAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22291</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>253448</contig_pos>
        <strand>+</strand>
        <context>GTAATTTTGC[A/G]AAAAATTATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCCCCCATGAGTTCAACTCCTTGAGGAACGTATATAACCGTAATTTTGC</left_flank>
        <right_flank>AAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACAATGTTTGTTTTTT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACTAGACTGAATTAGACTGAGTAATGTAGGCCAGAAACTGTTTTGTGAGTGTGTGCGCCTTTAATCCCTTCGTGGCGAGACCCGTACGATAGGGCGCGCTTGCACGAAGAAAGGAGAAAAAGGCGGGGGAATTTGAATATGAGAAAACAATAGAAAGACTGATAAACAAAGATAAATAATGAGAATGAAGTGGGAAATAGGAAGATTTCTGAGGAATAAGCACAGTGGGCTGGGCCTAGAGGTCCTCAGAATATCTTAAAGTTGGCGAGTCGGCGGATAACCACGTGGACTCGTCAACAGTTAGGGTATGCATTCTACCATAACCGTGTACAACGCTTTCCGTCACTCTGCATACATCGGACGACCCGCATCTATGTTCATTGCCCGCTCTAGTTTTTTCCGGTAGCGGCGCAATCGGTAGCGGCGCCGCGCATTTAGTACTCGCCCCCCCCCCATGAGTTCAACTCCTTGAGGAACGTATATAACCGTAATTTTGCAAAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACAATGTTTGTTTTTTGCTTTTGTCCATGACACTTGAGCTCATGAAAAATATATGACAAACTAATAAAAATTCTGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCAGCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTCAGGAAATGAAGGAGAGAAAATAAATGTTTAGTGAACCATGAACAGAGCTTGGCAAACTTTTTGATAGAAAATGTGTGAAACCCGGTGAGGGTAGGAAATTCGAAATACACAAATAATCAGACTGAGAAAGAGAGCAATCCAGTAG</canonical>
            <polymorphic>TTACTAGACTGAATTAGACTGAGTAATGTAGGCCAGAAACTGTTTTGTGAGTGTGTGCGCCTTTAATCCCTTCGTGGCGAGACCCGTACGATAGGGCGCGCTTGCACGAAGAAAGGAGAAAAAGGCGGGGGAATTTGAATATGAGAAAACAATAGAAAGACTGATAAACAAAGATAAATAATGAGAATGAAGTGGGAAATAGGAAGATTTCTGAGGAATAAGCACAGTGGGCTGGGCCTAGAGGTCCTCAGAATATCTTAAAGTTGGCGAGTCGGCGGATAACCACGTGGACTCGTCAACAGTTAGGGTATGCATTCTACCATAACCGTGTACAACGCTTTCCGTCACTCTGCATACATCGGACGACCCGCATCTATGTTCATTGCCCGCTCTAGTTTTTTCCGGTAGCGGCGCAATCGGTAGCGGCGCCGCGCATTTAGTACTCGCCCCCCCCCCATGAGTTCAACTCCTTGAGGAACGTATATAACCGTAATTTTGCRAAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACAATGTTTGTTTTTTGCTTTTGTCCATGACACTTGAGCTCATGAAAAATATATGACAAACTAATAAAAATTCTGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCAGCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTCAGGAAATGAAGGAGAGAAAATAAATGTTTAGTGAACCATGAACAGAGCTTGGCAAACTTTTTGATAGAAAATGTGTGAAACCCGGTGAGGGTAGGAAATTCGAAATACACAAATAATCAGACTGAGAAAGAGAGCAATCCAGTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>208 170 158 146 109 104 65 40</canonical_bands>
                <polymorphic_bands>304 208 170 109 104 65 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTCCGTCACTCTGCATAC</pcr_primer_p1>
		<pcr_primer_p2>ATATTTTTCATGAGCTCAAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTTCCGTCACTCTGCATACATCGGACGACCCGCATCTATGTTCATTGCCCGCTCTAGTTTTTTCCGGTAGCGGCGCAATCGGTAGCGGCGCCGCGCATTTAGTACTCGCCCCCCCCCCATGAGTTCAACTCCTTGAGGAACGTATATAACCGTAATTTTGCAAAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACAATGTTTGTTTTTTGCTTTTGTCCATGACACTTGAGCTCATGAAAAATAT</canonical_amplicon>
		<polymorphic_amplicon>CTTTCCGTCACTCTGCATACATCGGACGACCCGCATCTATGTTCATTGCCCGCTCTAGTTTTTTCCGGTAGCGGCGCAATCGGTAGCGGCGCCGCGCATTTAGTACTCGCCCCCCCCCCATGAGTTCAACTCCTTGAGGAACGTATATAACCGTAATTTTGCRAAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACAATGTTTGTTTTTTGCTTTTGTCCATGACACTTGAGCTCATGAAAAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22292</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>253493</contig_pos>
        <strand>+</strand>
        <context>ACAATGTTTG[G/T]TTYTTGCTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTGCAAAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACAATGTTTG</left_flank>
        <right_flank>TTTTTGCTTTTGTCCATGACACTTGAGCTCATGAAAAATATATGACAAAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGAGTGTGTGCGCCTTTAATCCCTTCGTGGCGAGACCCGTACGATAGGGCGCGCTTGCACGAAGAAAGGAGAAAAAGGCGGGGGAATTTGAATATGAGAAAACAATAGAAAGACTGATAAACAAAGATAAATAATGAGAATGAAGTGGGAAATAGGAAGATTTCTGAGGAATAAGCACAGTGGGCTGGGCCTAGAGGTCCTCAGAATATCTTAAAGTTGGCGAGTCGGCGGATAACCACGTGGACTCGTCAACAGTTAGGGTATGCATTCTACCATAACCGTGTACAACGCTTTCCGTCACTCTGCATACATCGGACGACCCGCATCTATGTTCATTGCCCGCTCTAGTTTTTTCCGGTAGCGGCGCAATCGGTAGCGGCGCCGCGCATTTAGTACTCGCCCCCCCCCCATGAGTTCAACTCCTTGAGGAACGTATATAACCGTAATTTTGCAAAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACAATGTTTGTTTTTTGCTTTTGTCCATGACACTTGAGCTCATGAAAAATATATGACAAACTAATAAAAATTCTGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCAGCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTCAGGAAATGAAGGAGAGAAAATAAATGTTTAGTGAACCATGAACAGAGCTTGGCAAACTTTTTGATAGAAAATGTGTGAAACCCGGTGAGGGTAGGAAATTCGAAATACACAAATAATCAGACTGAGAAAGAGAGCAATCCAGTAGAATTTATAATTCAAAGAAGCGTTGAAAGGTTGGCACGGGAGTTCT</canonical>
            <polymorphic>TGTGAGTGTGTGCGCCTTTAATCCCTTCGTGGCGAGACCCGTACGATAGGGCGCGCTTGCACGAAGAAAGGAGAAAAAGGCGGGGGAATTTGAATATGAGAAAACAATAGAAAGACTGATAAACAAAGATAAATAATGAGAATGAAGTGGGAAATAGGAAGATTTCTGAGGAATAAGCACAGTGGGCTGGGCCTAGAGGTCCTCAGAATATCTTAAAGTTGGCGAGTCGGCGGATAACCACGTGGACTCGTCAACAGTTAGGGTATGCATTCTACCATAACCGTGTACAACGCTTTCCGTCACTCTGCATACATCGGACGACCCGCATCTATGTTCATTGCCCGCTCTAGTTTTTTCCGGTAGCGGCGCAATCGGTAGCGGCGCCGCGCATTTAGTACTCGCCCCCCCCCCATGAGTTCAACTCCTTGAGGAACGTATATAACCGTAATTTTGCAAAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACAATGTTTGKTTTTTGCTTTTGTCCATGACACTTGAGCTCATGAAAAATATATGACAAACTAATAAAAATTCTGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCAGCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTCAGGAAATGAAGGAGAGAAAATAAATGTTTAGTGAACCATGAACAGAGCTTGGCAAACTTTTTGATAGAAAATGTGTGAAACCCGGTGAGGGTAGGAAATTCGAAATACACAAATAATCAGACTGAGAAAGAGAGCAATCCAGTAGAATTTATAATTCAAAGAAGCGTTGAAAGGTTGGCACGGGAGTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCTTGAGGAACGTATATAACC</pcr_primer_p1>
		<pcr_primer_p2>TAGGTCAGCAATAAAGAAACAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCCTTGAGGAACGTATATAACCGTAATTTTGCAAAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACAATGTTTGTTTTTTGCTTTTGTCCATGACACTTGAGCTCATGAAAAATATATGACAAACTAATAAAAATTCTGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTA</canonical_amplicon>
		<polymorphic_amplicon>CTCCTTGAGGAACGTATATAACCGTAATTTTGCAAAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACAATGTTTGKTTTTTGCTTTTGTCCATGACACTTGAGCTCATGAAAAATATATGACAAACTAATAAAAATTCTGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22293</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>253496</contig_pos>
        <strand>+</strand>
        <context>ATGTTTGKTT[C/T]TTGCTTTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCAAAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACAATGTTTGTTT</left_flank>
        <right_flank>TTGCTTTTGTCCATGACACTTGAGCTCATGAAAAATATATGACAAACTAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTGTGTGCGCCTTTAATCCCTTCGTGGCGAGACCCGTACGATAGGGCGCGCTTGCACGAAGAAAGGAGAAAAAGGCGGGGGAATTTGAATATGAGAAAACAATAGAAAGACTGATAAACAAAGATAAATAATGAGAATGAAGTGGGAAATAGGAAGATTTCTGAGGAATAAGCACAGTGGGCTGGGCCTAGAGGTCCTCAGAATATCTTAAAGTTGGCGAGTCGGCGGATAACCACGTGGACTCGTCAACAGTTAGGGTATGCATTCTACCATAACCGTGTACAACGCTTTCCGTCACTCTGCATACATCGGACGACCCGCATCTATGTTCATTGCCCGCTCTAGTTTTTTCCGGTAGCGGCGCAATCGGTAGCGGCGCCGCGCATTTAGTACTCGCCCCCCCCCCATGAGTTCAACTCCTTGAGGAACGTATATAACCGTAATTTTGCAAAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACAATGTTTGTTTTTTGCTTTTGTCCATGACACTTGAGCTCATGAAAAATATATGACAAACTAATAAAAATTCTGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCAGCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTCAGGAAATGAAGGAGAGAAAATAAATGTTTAGTGAACCATGAACAGAGCTTGGCAAACTTTTTGATAGAAAATGTGTGAAACCCGGTGAGGGTAGGAAATTCGAAATACACAAATAATCAGACTGAGAAAGAGAGCAATCCAGTAGAATTTATAATTCAAAGAAGCGTTGAAAGGTTGGCACGGGAGTTCTGAC</canonical>
            <polymorphic>GAGTGTGTGCGCCTTTAATCCCTTCGTGGCGAGACCCGTACGATAGGGCGCGCTTGCACGAAGAAAGGAGAAAAAGGCGGGGGAATTTGAATATGAGAAAACAATAGAAAGACTGATAAACAAAGATAAATAATGAGAATGAAGTGGGAAATAGGAAGATTTCTGAGGAATAAGCACAGTGGGCTGGGCCTAGAGGTCCTCAGAATATCTTAAAGTTGGCGAGTCGGCGGATAACCACGTGGACTCGTCAACAGTTAGGGTATGCATTCTACCATAACCGTGTACAACGCTTTCCGTCACTCTGCATACATCGGACGACCCGCATCTATGTTCATTGCCCGCTCTAGTTTTTTCCGGTAGCGGCGCAATCGGTAGCGGCGCCGCGCATTTAGTACTCGCCCCCCCCCCATGAGTTCAACTCCTTGAGGAACGTATATAACCGTAATTTTGCAAAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACAATGTTTGTTTYTTGCTTTTGTCCATGACACTTGAGCTCATGAAAAATATATGACAAACTAATAAAAATTCTGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCAGCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTCAGGAAATGAAGGAGAGAAAATAAATGTTTAGTGAACCATGAACAGAGCTTGGCAAACTTTTTGATAGAAAATGTGTGAAACCCGGTGAGGGTAGGAAATTCGAAATACACAAATAATCAGACTGAGAAAGAGAGCAATCCAGTAGAATTTATAATTCAAAGAAGCGTTGAAAGGTTGGCACGGGAGTTCTGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCTTGAGGAACGTATATAACC</pcr_primer_p1>
		<pcr_primer_p2>TAGGTCAGCAATAAAGAAACAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCCTTGAGGAACGTATATAACCGTAATTTTGCAAAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACAATGTTTGTTTTTTGCTTTTGTCCATGACACTTGAGCTCATGAAAAATATATGACAAACTAATAAAAATTCTGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTA</canonical_amplicon>
		<polymorphic_amplicon>CTCCTTGAGGAACGTATATAACCGTAATTTTGCAAAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACAATGTTTGTTTYTTGCTTTTGTCCATGACACTTGAGCTCATGAAAAATATATGACAAACTAATAAAAATTCTGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22294</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>253626</contig_pos>
        <strand>+</strand>
        <context>TTCTGCCCCA[C/T]CTWCTGTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCA</left_flank>
        <right_flank>CTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATGAGAATGAAGTGGGAAATAGGAAGATTTCTGAGGAATAAGCACAGTGGGCTGGGCCTAGAGGTCCTCAGAATATCTTAAAGTTGGCGAGTCGGCGGATAACCACGTGGACTCGTCAACAGTTAGGGTATGCATTCTACCATAACCGTGTACAACGCTTTCCGTCACTCTGCATACATCGGACGACCCGCATCTATGTTCATTGCCCGCTCTAGTTTTTTCCGGTAGCGGCGCAATCGGTAGCGGCGCCGCGCATTTAGTACTCGCCCCCCCCCCATGAGTTCAACTCCTTGAGGAACGTATATAACCGTAATTTTGCAAAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACAATGTTTGTTTTTTGCTTTTGTCCATGACACTTGAGCTCATGAAAAATATATGACAAACTAATAAAAATTCTGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCAGCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTCAGGAAATGAAGGAGAGAAAATAAATGTTTAGTGAACCATGAACAGAGCTTGGCAAACTTTTTGATAGAAAATGTGTGAAACCCGGTGAGGGTAGGAAATTCGAAATACACAAATAATCAGACTGAGAAAGAGAGCAATCCAGTAGAATTTATAATTCAAAGAAGCGTTGAAAGGTTGGCACGGGAGTTCTGACGGCGCGAACTGCGAAACGAGACGTACGGCGAGCGGGACAACTTCGTGGTCATTGTTTCATCAACACATTCGTATTCAGACTTGGCGAACGACGGGAACAGCCAGCAGCAGCACGCGGATAGTGCAGCAGC</canonical>
            <polymorphic>TAATGAGAATGAAGTGGGAAATAGGAAGATTTCTGAGGAATAAGCACAGTGGGCTGGGCCTAGAGGTCCTCAGAATATCTTAAAGTTGGCGAGTCGGCGGATAACCACGTGGACTCGTCAACAGTTAGGGTATGCATTCTACCATAACCGTGTACAACGCTTTCCGTCACTCTGCATACATCGGACGACCCGCATCTATGTTCATTGCCCGCTCTAGTTTTTTCCGGTAGCGGCGCAATCGGTAGCGGCGCCGCGCATTTAGTACTCGCCCCCCCCCCATGAGTTCAACTCCTTGAGGAACGTATATAACCGTAATTTTGCAAAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACAATGTTTGTTTTTTGCTTTTGTCCATGACACTTGAGCTCATGAAAAATATATGACAAACTAATAAAAATTCTGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCAYCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCAGCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTCAGGAAATGAAGGAGAGAAAATAAATGTTTAGTGAACCATGAACAGAGCTTGGCAAACTTTTTGATAGAAAATGTGTGAAACCCGGTGAGGGTAGGAAATTCGAAATACACAAATAATCAGACTGAGAAAGAGAGCAATCCAGTAGAATTTATAATTCAAAGAAGCGTTGAAAGGTTGGCACGGGAGTTCTGACGGCGCGAACTGCGAAACGAGACGTACGGCGAGCGGGACAACTTCGTGGTCATTGTTTCATCAACACATTCGTATTCAGACTTGGCGAACGACGGGAACAGCCAGCAGCAGCACGCGGATAGTGCAGCAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCTTTGATATACAGGGTTACG</pcr_primer_p1>
		<pcr_primer_p2>GACTCATCCTTTTCAGATCATTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCAGCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTC</canonical_amplicon>
		<polymorphic_amplicon>TGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCAYCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCAGCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22295</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>253629</contig_pos>
        <strand>+</strand>
        <context>TGCCCCAYCT[A/T]CTGTCCARAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCT</left_flank>
        <right_flank>CTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGAATGAAGTGGGAAATAGGAAGATTTCTGAGGAATAAGCACAGTGGGCTGGGCCTAGAGGTCCTCAGAATATCTTAAAGTTGGCGAGTCGGCGGATAACCACGTGGACTCGTCAACAGTTAGGGTATGCATTCTACCATAACCGTGTACAACGCTTTCCGTCACTCTGCATACATCGGACGACCCGCATCTATGTTCATTGCCCGCTCTAGTTTTTTCCGGTAGCGGCGCAATCGGTAGCGGCGCCGCGCATTTAGTACTCGCCCCCCCCCCATGAGTTCAACTCCTTGAGGAACGTATATAACCGTAATTTTGCAAAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACAATGTTTGTTTTTTGCTTTTGTCCATGACACTTGAGCTCATGAAAAATATATGACAAACTAATAAAAATTCTGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCAGCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTCAGGAAATGAAGGAGAGAAAATAAATGTTTAGTGAACCATGAACAGAGCTTGGCAAACTTTTTGATAGAAAATGTGTGAAACCCGGTGAGGGTAGGAAATTCGAAATACACAAATAATCAGACTGAGAAAGAGAGCAATCCAGTAGAATTTATAATTCAAAGAAGCGTTGAAAGGTTGGCACGGGAGTTCTGACGGCGCGAACTGCGAAACGAGACGTACGGCGAGCGGGACAACTTCGTGGTCATTGTTTCATCAACACATTCGTATTCAGACTTGGCGAACGACGGGAACAGCCAGCAGCAGCACGCGGATAGTGCAGCAGCAGC</canonical>
            <polymorphic>TGAGAATGAAGTGGGAAATAGGAAGATTTCTGAGGAATAAGCACAGTGGGCTGGGCCTAGAGGTCCTCAGAATATCTTAAAGTTGGCGAGTCGGCGGATAACCACGTGGACTCGTCAACAGTTAGGGTATGCATTCTACCATAACCGTGTACAACGCTTTCCGTCACTCTGCATACATCGGACGACCCGCATCTATGTTCATTGCCCGCTCTAGTTTTTTCCGGTAGCGGCGCAATCGGTAGCGGCGCCGCGCATTTAGTACTCGCCCCCCCCCCATGAGTTCAACTCCTTGAGGAACGTATATAACCGTAATTTTGCAAAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACAATGTTTGTTTTTTGCTTTTGTCCATGACACTTGAGCTCATGAAAAATATATGACAAACTAATAAAAATTCTGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTWCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCAGCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTCAGGAAATGAAGGAGAGAAAATAAATGTTTAGTGAACCATGAACAGAGCTTGGCAAACTTTTTGATAGAAAATGTGTGAAACCCGGTGAGGGTAGGAAATTCGAAATACACAAATAATCAGACTGAGAAAGAGAGCAATCCAGTAGAATTTATAATTCAAAGAAGCGTTGAAAGGTTGGCACGGGAGTTCTGACGGCGCGAACTGCGAAACGAGACGTACGGCGAGCGGGACAACTTCGTGGTCATTGTTTCATCAACACATTCGTATTCAGACTTGGCGAACGACGGGAACAGCCAGCAGCAGCACGCGGATAGTGCAGCAGCAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCTTTGATATACAGGGTTACG</pcr_primer_p1>
		<pcr_primer_p2>GACTCATCCTTTTCAGATCATTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCAGCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTC</canonical_amplicon>
		<polymorphic_amplicon>TGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTWCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCAGCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22296</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>253637</contig_pos>
        <strand>+</strand>
        <context>CTWCTGTCCA[A/G]ACGAGTTGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCA</left_flank>
        <right_flank>ACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCAGCC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTGGGAAATAGGAAGATTTCTGAGGAATAAGCACAGTGGGCTGGGCCTAGAGGTCCTCAGAATATCTTAAAGTTGGCGAGTCGGCGGATAACCACGTGGACTCGTCAACAGTTAGGGTATGCATTCTACCATAACCGTGTACAACGCTTTCCGTCACTCTGCATACATCGGACGACCCGCATCTATGTTCATTGCCCGCTCTAGTTTTTTCCGGTAGCGGCGCAATCGGTAGCGGCGCCGCGCATTTAGTACTCGCCCCCCCCCCATGAGTTCAACTCCTTGAGGAACGTATATAACCGTAATTTTGCAAAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACAATGTTTGTTTTTTGCTTTTGTCCATGACACTTGAGCTCATGAAAAATATATGACAAACTAATAAAAATTCTGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCAGCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTCAGGAAATGAAGGAGAGAAAATAAATGTTTAGTGAACCATGAACAGAGCTTGGCAAACTTTTTGATAGAAAATGTGTGAAACCCGGTGAGGGTAGGAAATTCGAAATACACAAATAATCAGACTGAGAAAGAGAGCAATCCAGTAGAATTTATAATTCAAAGAAGCGTTGAAAGGTTGGCACGGGAGTTCTGACGGCGCGAACTGCGAAACGAGACGTACGGCGAGCGGGACAACTTCGTGGTCATTGTTTCATCAACACATTCGTATTCAGACTTGGCGAACGACGGGAACAGCCAGCAGCAGCACGCGGATAGTGCAGCAGCAGCATCGTGAA</canonical>
            <polymorphic>AAGTGGGAAATAGGAAGATTTCTGAGGAATAAGCACAGTGGGCTGGGCCTAGAGGTCCTCAGAATATCTTAAAGTTGGCGAGTCGGCGGATAACCACGTGGACTCGTCAACAGTTAGGGTATGCATTCTACCATAACCGTGTACAACGCTTTCCGTCACTCTGCATACATCGGACGACCCGCATCTATGTTCATTGCCCGCTCTAGTTTTTTCCGGTAGCGGCGCAATCGGTAGCGGCGCCGCGCATTTAGTACTCGCCCCCCCCCCATGAGTTCAACTCCTTGAGGAACGTATATAACCGTAATTTTGCAAAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACAATGTTTGTTTTTTGCTTTTGTCCATGACACTTGAGCTCATGAAAAATATATGACAAACTAATAAAAATTCTGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCARACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCAGCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTCAGGAAATGAAGGAGAGAAAATAAATGTTTAGTGAACCATGAACAGAGCTTGGCAAACTTTTTGATAGAAAATGTGTGAAACCCGGTGAGGGTAGGAAATTCGAAATACACAAATAATCAGACTGAGAAAGAGAGCAATCCAGTAGAATTTATAATTCAAAGAAGCGTTGAAAGGTTGGCACGGGAGTTCTGACGGCGCGAACTGCGAAACGAGACGTACGGCGAGCGGGACAACTTCGTGGTCATTGTTTCATCAACACATTCGTATTCAGACTTGGCGAACGACGGGAACAGCCAGCAGCAGCACGCGGATAGTGCAGCAGCAGCATCGTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCTTTGATATACAGGGTTACG</pcr_primer_p1>
		<pcr_primer_p2>GACTCATCCTTTTCAGATCATTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCAGCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTC</canonical_amplicon>
		<polymorphic_amplicon>TGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCARACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCAGCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22297</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>253682</contig_pos>
        <strand>+</strand>
        <context>GCTCAAACTT[C/T]CARCCTTTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTT</left_flank>
        <right_flank>CAGCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCCTAGAGGTCCTCAGAATATCTTAAAGTTGGCGAGTCGGCGGATAACCACGTGGACTCGTCAACAGTTAGGGTATGCATTCTACCATAACCGTGTACAACGCTTTCCGTCACTCTGCATACATCGGACGACCCGCATCTATGTTCATTGCCCGCTCTAGTTTTTTCCGGTAGCGGCGCAATCGGTAGCGGCGCCGCGCATTTAGTACTCGCCCCCCCCCCATGAGTTCAACTCCTTGAGGAACGTATATAACCGTAATTTTGCAAAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACAATGTTTGTTTTTTGCTTTTGTCCATGACACTTGAGCTCATGAAAAATATATGACAAACTAATAAAAATTCTGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCAGCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTCAGGAAATGAAGGAGAGAAAATAAATGTTTAGTGAACCATGAACAGAGCTTGGCAAACTTTTTGATAGAAAATGTGTGAAACCCGGTGAGGGTAGGAAATTCGAAATACACAAATAATCAGACTGAGAAAGAGAGCAATCCAGTAGAATTTATAATTCAAAGAAGCGTTGAAAGGTTGGCACGGGAGTTCTGACGGCGCGAACTGCGAAACGAGACGTACGGCGAGCGGGACAACTTCGTGGTCATTGTTTCATCAACACATTCGTATTCAGACTTGGCGAACGACGGGAACAGCCAGCAGCAGCACGCGGATAGTGCAGCAGCAGCATCGTGAAGGCGTAGGCGGAAGTGACGGCAACAAATGATGTAGACGATGGGAT</canonical>
            <polymorphic>GGCCTAGAGGTCCTCAGAATATCTTAAAGTTGGCGAGTCGGCGGATAACCACGTGGACTCGTCAACAGTTAGGGTATGCATTCTACCATAACCGTGTACAACGCTTTCCGTCACTCTGCATACATCGGACGACCCGCATCTATGTTCATTGCCCGCTCTAGTTTTTTCCGGTAGCGGCGCAATCGGTAGCGGCGCCGCGCATTTAGTACTCGCCCCCCCCCCATGAGTTCAACTCCTTGAGGAACGTATATAACCGTAATTTTGCAAAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACAATGTTTGTTTTTTGCTTTTGTCCATGACACTTGAGCTCATGAAAAATATATGACAAACTAATAAAAATTCTGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTYCAGCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTCAGGAAATGAAGGAGAGAAAATAAATGTTTAGTGAACCATGAACAGAGCTTGGCAAACTTTTTGATAGAAAATGTGTGAAACCCGGTGAGGGTAGGAAATTCGAAATACACAAATAATCAGACTGAGAAAGAGAGCAATCCAGTAGAATTTATAATTCAAAGAAGCGTTGAAAGGTTGGCACGGGAGTTCTGACGGCGCGAACTGCGAAACGAGACGTACGGCGAGCGGGACAACTTCGTGGTCATTGTTTCATCAACACATTCGTATTCAGACTTGGCGAACGACGGGAACAGCCAGCAGCAGCACGCGGATAGTGCAGCAGCAGCATCGTGAAGGCGTAGGCGGAAGTGACGGCAACAAATGATGTAGACGATGGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCTTTGATATACAGGGTTACG</pcr_primer_p1>
		<pcr_primer_p2>GACTCATCCTTTTCAGATCATTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCAGCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTC</canonical_amplicon>
		<polymorphic_amplicon>TGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTYCAGCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22298</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>253685</contig_pos>
        <strand>+</strand>
        <context>CAAACTTYCA[A/G]CCTTTATTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCA</left_flank>
        <right_flank>CCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAGAGGTCCTCAGAATATCTTAAAGTTGGCGAGTCGGCGGATAACCACGTGGACTCGTCAACAGTTAGGGTATGCATTCTACCATAACCGTGTACAACGCTTTCCGTCACTCTGCATACATCGGACGACCCGCATCTATGTTCATTGCCCGCTCTAGTTTTTTCCGGTAGCGGCGCAATCGGTAGCGGCGCCGCGCATTTAGTACTCGCCCCCCCCCCATGAGTTCAACTCCTTGAGGAACGTATATAACCGTAATTTTGCAAAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACAATGTTTGTTTTTTGCTTTTGTCCATGACACTTGAGCTCATGAAAAATATATGACAAACTAATAAAAATTCTGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCAGCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTCAGGAAATGAAGGAGAGAAAATAAATGTTTAGTGAACCATGAACAGAGCTTGGCAAACTTTTTGATAGAAAATGTGTGAAACCCGGTGAGGGTAGGAAATTCGAAATACACAAATAATCAGACTGAGAAAGAGAGCAATCCAGTAGAATTTATAATTCAAAGAAGCGTTGAAAGGTTGGCACGGGAGTTCTGACGGCGCGAACTGCGAAACGAGACGTACGGCGAGCGGGACAACTTCGTGGTCATTGTTTCATCAACACATTCGTATTCAGACTTGGCGAACGACGGGAACAGCCAGCAGCAGCACGCGGATAGTGCAGCAGCAGCATCGTGAAGGCGTAGGCGGAAGTGACGGCAACAAATGATGTAGACGATGGGATTGG</canonical>
            <polymorphic>CTAGAGGTCCTCAGAATATCTTAAAGTTGGCGAGTCGGCGGATAACCACGTGGACTCGTCAACAGTTAGGGTATGCATTCTACCATAACCGTGTACAACGCTTTCCGTCACTCTGCATACATCGGACGACCCGCATCTATGTTCATTGCCCGCTCTAGTTTTTTCCGGTAGCGGCGCAATCGGTAGCGGCGCCGCGCATTTAGTACTCGCCCCCCCCCCATGAGTTCAACTCCTTGAGGAACGTATATAACCGTAATTTTGCAAAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACAATGTTTGTTTTTTGCTTTTGTCCATGACACTTGAGCTCATGAAAAATATATGACAAACTAATAAAAATTCTGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCARCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTCAGGAAATGAAGGAGAGAAAATAAATGTTTAGTGAACCATGAACAGAGCTTGGCAAACTTTTTGATAGAAAATGTGTGAAACCCGGTGAGGGTAGGAAATTCGAAATACACAAATAATCAGACTGAGAAAGAGAGCAATCCAGTAGAATTTATAATTCAAAGAAGCGTTGAAAGGTTGGCACGGGAGTTCTGACGGCGCGAACTGCGAAACGAGACGTACGGCGAGCGGGACAACTTCGTGGTCATTGTTTCATCAACACATTCGTATTCAGACTTGGCGAACGACGGGAACAGCCAGCAGCAGCACGCGGATAGTGCAGCAGCAGCATCGTGAAGGCGTAGGCGGAAGTGACGGCAACAAATGATGTAGACGATGGGATTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>335 246 152 89 84 81 13</canonical_bands>
                <polymorphic_bands>335 246 152 94 89 84</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTCTTTGATATACAGGGTTACG</pcr_primer_p1>
		<pcr_primer_p2>GACTCATCCTTTTCAGATCATTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCAGCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTC</canonical_amplicon>
		<polymorphic_amplicon>TGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCARCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22299</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>253712</contig_pos>
        <strand>+</strand>
        <context>TATAGCAAAA[A/G]TTCAATTATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTACTTTGCAGCTCAAACTTTCAGCCTTTATTGAATAATTTATAGCAAAA</left_flank>
        <right_flank>TTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCGAGTCGGCGGATAACCACGTGGACTCGTCAACAGTTAGGGTATGCATTCTACCATAACCGTGTACAACGCTTTCCGTCACTCTGCATACATCGGACGACCCGCATCTATGTTCATTGCCCGCTCTAGTTTTTTCCGGTAGCGGCGCAATCGGTAGCGGCGCCGCGCATTTAGTACTCGCCCCCCCCCCATGAGTTCAACTCCTTGAGGAACGTATATAACCGTAATTTTGCAAAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACAATGTTTGTTTTTTGCTTTTGTCCATGACACTTGAGCTCATGAAAAATATATGACAAACTAATAAAAATTCTGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCAGCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTCAGGAAATGAAGGAGAGAAAATAAATGTTTAGTGAACCATGAACAGAGCTTGGCAAACTTTTTGATAGAAAATGTGTGAAACCCGGTGAGGGTAGGAAATTCGAAATACACAAATAATCAGACTGAGAAAGAGAGCAATCCAGTAGAATTTATAATTCAAAGAAGCGTTGAAAGGTTGGCACGGGAGTTCTGACGGCGCGAACTGCGAAACGAGACGTACGGCGAGCGGGACAACTTCGTGGTCATTGTTTCATCAACACATTCGTATTCAGACTTGGCGAACGACGGGAACAGCCAGCAGCAGCACGCGGATAGTGCAGCAGCAGCATCGTGAAGGCGTAGGCGGAAGTGACGGCAACAAATGATGTAGACGATGGGATTGGTTGAGGAACTGAAAAGAGGTGGTGAAA</canonical>
            <polymorphic>TGGCGAGTCGGCGGATAACCACGTGGACTCGTCAACAGTTAGGGTATGCATTCTACCATAACCGTGTACAACGCTTTCCGTCACTCTGCATACATCGGACGACCCGCATCTATGTTCATTGCCCGCTCTAGTTTTTTCCGGTAGCGGCGCAATCGGTAGCGGCGCCGCGCATTTAGTACTCGCCCCCCCCCCATGAGTTCAACTCCTTGAGGAACGTATATAACCGTAATTTTGCAAAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACAATGTTTGTTTTTTGCTTTTGTCCATGACACTTGAGCTCATGAAAAATATATGACAAACTAATAAAAATTCTGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCAGCCTTTATTGAATAATTTATAGCAAAARTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTCAGGAAATGAAGGAGAGAAAATAAATGTTTAGTGAACCATGAACAGAGCTTGGCAAACTTTTTGATAGAAAATGTGTGAAACCCGGTGAGGGTAGGAAATTCGAAATACACAAATAATCAGACTGAGAAAGAGAGCAATCCAGTAGAATTTATAATTCAAAGAAGCGTTGAAAGGTTGGCACGGGAGTTCTGACGGCGCGAACTGCGAAACGAGACGTACGGCGAGCGGGACAACTTCGTGGTCATTGTTTCATCAACACATTCGTATTCAGACTTGGCGAACGACGGGAACAGCCAGCAGCAGCACGCGGATAGTGCAGCAGCAGCATCGTGAAGGCGTAGGCGGAAGTGACGGCAACAAATGATGTAGACGATGGGATTGGTTGAGGAACTGAAAAGAGGTGGTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCTTTGATATACAGGGTTACG</pcr_primer_p1>
		<pcr_primer_p2>GACTCATCCTTTTCAGATCATTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCAGCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTC</canonical_amplicon>
		<polymorphic_amplicon>TGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCAGCCTTTATTGAATAATTTATAGCAAAARTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22300</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>253923</contig_pos>
        <strand>+</strand>
        <context>CAAATAATCA[A/G]ACTGAGAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGTGTGAAACCCGGTGAGGGTAGGAAATTCGAAATACACAAATAATCA</left_flank>
        <right_flank>ACTGAGAAAGAGAGCAATCCAGTAGAATTTATAATTCAAAGAAGCGTTGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACGTATATAACCGTAATTTTGCAAAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACAATGTTTGTTTTTTGCTTTTGTCCATGACACTTGAGCTCATGAAAAATATATGACAAACTAATAAAAATTCTGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCAGCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTCAGGAAATGAAGGAGAGAAAATAAATGTTTAGTGAACCATGAACAGAGCTTGGCAAACTTTTTGATAGAAAATGTGTGAAACCCGGTGAGGGTAGGAAATTCGAAATACACAAATAATCAGACTGAGAAAGAGAGCAATCCAGTAGAATTTATAATTCAAAGAAGCGTTGAAAGGTTGGCACGGGAGTTCTGACGGCGCGAACTGCGAAACGAGACGTACGGCGAGCGGGACAACTTCGTGGTCATTGTTTCATCAACACATTCGTATTCAGACTTGGCGAACGACGGGAACAGCCAGCAGCAGCACGCGGATAGTGCAGCAGCAGCATCGTGAAGGCGTAGGCGGAAGTGACGGCAACAAATGATGTAGACGATGGGATTGGTTGAGGAACTGAAAAGAGGTGGTGAAAATTGGTCTTGTCGCTCTGGTCACTTCATTCTTTGAGTTGCATTTGATTATGTTTCTTTTTTTGAAAAGAGAAAAATGGAGCTGAAGCTAAATGCGTGTTTCCTACTCTGTTTTCGGCGCCGCTTTTTGACCCCGGGGCAAAAATCTCCGGACAACAGTAATGTTAAATAGCGTGTGTGGAGGAGTGTCAAGGAATGTGTAAGACAACTGGT</canonical>
            <polymorphic>GAACGTATATAACCGTAATTTTGCAAAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACAATGTTTGTTTTTTGCTTTTGTCCATGACACTTGAGCTCATGAAAAATATATGACAAACTAATAAAAATTCTGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCAGCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTCAGGAAATGAAGGAGAGAAAATAAATGTTTAGTGAACCATGAACAGAGCTTGGCAAACTTTTTGATAGAAAATGTGTGAAACCCGGTGAGGGTAGGAAATTCGAAATACACAAATAATCARACTGAGAAAGAGAGCAATCCAGTAGAATTTATAATTCAAAGAAGCGTTGAAAGGTTGGCACGGGAGTTCTGACGGCGCGAACTGCGAAACGAGACGTACGGCGAGCGGGACAACTTCGTGGTCATTGTTTCATCAACACATTCGTATTCAGACTTGGCGAACGACGGGAACAGCCAGCAGCAGCACGCGGATAGTGCAGCAGCAGCATCGTGAAGGCGTAGGCGGAAGTGACGGCAACAAATGATGTAGACGATGGGATTGGTTGAGGAACTGAAAAGAGGTGGTGAAAATTGGTCTTGTCGCTCTGGTCACTTCATTCTTTGAGTTGCATTTGATTATGTTTCTTTTTTTGAAAAGAGAAAAATGGAGCTGAAGCTAAATGCGTGTTTCCTACTCTGTTTTCGGCGCCGCTTTTTGACCCCGGGGCAAAAATCTCCGGACAACAGTAATGTTAAATAGCGTGTGTGGAGGAGTGTCAAGGAATGTGTAAGACAACTGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>350 328 133 80 71 38</canonical_bands>
                <polymorphic_bands>350 328 204 80 38</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGTTTAGTGAACCATGAACAG</pcr_primer_p1>
		<pcr_primer_p2>GAATACGAATGTGTTGATGAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATGTTTAGTGAACCATGAACAGAGCTTGGCAAACTTTTTGATAGAAAATGTGTGAAACCCGGTGAGGGTAGGAAATTCGAAATACACAAATAATCAGACTGAGAAAGAGAGCAATCCAGTAGAATTTATAATTCAAAGAAGCGTTGAAAGGTTGGCACGGGAGTTCTGACGGCGCGAACTGCGAAACGAGACGTACGGCGAGCGGGACAACTTCGTGGTCATTGTTTCATCAACACATTCGTATTC</canonical_amplicon>
		<polymorphic_amplicon>AATGTTTAGTGAACCATGAACAGAGCTTGGCAAACTTTTTGATAGAAAATGTGTGAAACCCGGTGAGGGTAGGAAATTCGAAATACACAAATAATCARACTGAGAAAGAGAGCAATCCAGTAGAATTTATAATTCAAAGAAGCGTTGAAAGGTTGGCACGGGAGTTCTGACGGCGCGAACTGCGAAACGAGACGTACGGCGAGCGGGACAACTTCGTGGTCATTGTTTCATCAACACATTCGTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22301</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>257509</contig_pos>
        <strand></strand>
        <context>ATAAGAATTT[C/T]GYAAATTTGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACGTGCATCAGGAATTGGGCGGGAGCAGCACGAAATGAATAAGAATTT</left_flank>
        <right_flank>GGAAATTTGCTTGGCCGATCATCTTGATGAGTGTTCCGAAAAAAGTTTAG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTTGACTATGGCACTATAAAGATGTTAGAATTCATTAGAAGAAGGAAGTACAAGTACTTCGGAACACAATGAAGAAGAAAAATCAAATGCGTGAAAAGGAAAAAAAAAGAAAAAAGATTGAGTTATTTTAACCACCCAGAAACATTGTTTAAGAATATACGAAAAGAAGAAGTCCTGCAAAAAAGGAACGTTTGCCCTTTTTAAAAATGTTCATAGGGTTTCCCTATAATTAGATATTTGGATAACAGCAGCAGAATTAAAAAATAAGGAAAAAAACTAGGATTTTATCCGATTTCCACACTACTAACAATAACACTTTTTCCTTCACTAAGAATAATAGGAGACGACCAAAAGTGGGCGGAGCCTTGAATGGAGAGCAAGGCGTTTTGTGCATTCGGAAAAAAAAACGAAGCGGTTACGCGCGGGGCTAGGCAAAAGCGAAAAAAAGAAACGTGCATCAGGAATTGGGCGGGAGCAGCACGAAATGAATAAGAATTTCGGAAATTTGCTTGGCCGATCATCTTGATGAGTGTTCCGAAAAAAGTTTAGCAAGAAGAAGAGAGAAGAAGAGAGAGTGATGAGTAGCTGGTTGAACTAAAAACAGAAATGAAATAGGGTTGTGGTGGTGGTCCAGATTGGAAAAAGAAGGGATCTTTTTAGGGGTTTCAGTATCCTTTGTCACAGAAACTCATCTCTTTTAAGTGTTTTTCCAGAGAGAAATGTTTTTCGGACGACTCTAAGTGACCACAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAA</canonical>
            <polymorphic>GCTTGACTATGGCACTATAAAGATGTTAGAATTCATTAGAAGAAGGAAGTACAAGTACTTCGGAACACAATGAAGAAGAAAAATCAAATGCGTGAAAAGGAAAAAAAAAGAAAAAAGATTGAGTTATTTTAACCACCCAGAAACATTGTTTAAGAATATACGAAAAGAAGAAGTCCTGCAAAAAAGGAACGTTTGCCCTTTTTAAAAATGTTCATAGGGTTTCCCTATAATTAGATATTTGGATAACAGCAGCAGAATTAAAAAATAAGGAAAAAAACTAGGATTTTATCCGATTTCCACACTACTAACAATAACACTTTTTCCTTCACTAAGAATAATAGGAGACGACCAAAAGTGGGCGGAGCCTTGAATGGAGAGCAAGGCGTTTTGTGCATTCGGAAAAAAAAACGAAGCGGTTACGCGCGGGGCTAGGCAAAAGCGAAAAAAAGAAACGTGCATCAGGAATTGGGCGGGAGCAGCACGAAATGAATAAGAATTTYGGAAATTTGCTTGGCCGATCATCTTGATGAGTGTTCCGAAAAAAGTTTAGCAAGAAGAAGAGAGAAGAAGAGAGAGTGATGAGTAGCTGGTTGAACTAAAAACAGAAATGAAATAGGGTTGTGGTGGTGGTCCAGATTGGAAAAAGAAGGGATCTTTTTAGGGGTTTCAGTATCCTTTGTCACAGAAACTCATCTCTTTTAAGTGTTTTTCCAGAGAGAAATGTTTTTCGGACGACTCTAAGTGACCACAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>229 193 107 103 62 36 27 24 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 3</canonical_bands>
                <polymorphic_bands>229 193 139 107 62 27 24 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACACTTTTTCCTTCACTAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCTCTTCTTCTTGCTAAACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AACACTTTTTCCTTCACTAAGAATAATAGGAGACGACCAAAAGTGGGCGGAGCCTTGAATGGAGAGCAAGGCGTTTTGTGCATTCGGAAAAAAAAACGAAGCGGTTACGCGCGGGGCTAGGCAAAAGCGAAAAAAAGAAACGTGCATCAGGAATTGGGCGGGAGCAGCACGAAATGAATAAGAATTTCGGAAATTTGCTTGGCCGATCATCTTGATGAGTGTTCCGAAAAAAGTTTAGCAAGAAGAAGAGA</canonical_amplicon>
		<polymorphic_amplicon>AACACTTTTTCCTTCACTAAGAATAATAGGAGACGACCAAAAGTGGGCGGAGCCTTGAATGGAGAGCAAGGCGTTTTGTGCATTCGGAAAAAAAAACGAAGCGGTTACGCGCGGGGCTAGGCAAAAGCGAAAAAAAGAAACGTGCATCAGGAATTGGGCGGGAGCAGCACGAAATGAATAAGAATTTYGGAAATTTGCTTGGCCGATCATCTTGATGAGTGTTCCGAAAAAAGTTTAGCAAGAAGAAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22303</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>270360</contig_pos>
        <strand>+</strand>
        <context>AAAGTTCCTA[A/G]AATTCTGACC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTGAATCAAAAACAAGCGGGTCGGATTTCGGTATTCAGAAAGTTCCTA</left_flank>
        <right_flank>AATTCTGACCGAAATTTTTTTGAATGGATGAGGTTACGGTAATTGTTAGA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAGACTAAAAATCCAGGTTATAACTGGGAAAACAGGGAAAAGAGCTAAAGAAAAAAGGTGATGATTTTTATGAGGTTGCGATTTTTCATCACTCCAGCGGGCCAGCTGTTATAGGTCTTTAGTGAAATCATTTTAAAAAAAACCATTTAGAAAAATCAGTGAACAGAGAAACAGATGAATAAACTACGAGCCATAAAACCTACAAAGAAACAGCAATAAAATTGGAATAAGGGGATTAATAAGCAAAATCAATGGTGGTTATTACATAAATCACACCGGAAACTGGATAGCGGAGCCTCGTAGCAAGACGGTTGGGACTTTGGGAAAGTGTTGTGGCAGATAATGTGCTCCTGGCAAGTCAATGCGGACAGTCAATGAGGATACCGCCAATACTAATGAGTACATGACCATTTCCGAAACTACTTTTATAAAAATTCTAATTGTGTGAATTTGAATCAAAAACAAGCGGGTCGGATTTCGGTATTCAGAAAGTTCCTAGAATTCTGACCGAAATTTTTTTGAATGGATGAGGTTACGGTAATTGTTAGAATTTCTTTGAAATGTTGTTTGTTTGTTGTTGTTACTTTGCTTTTTTGCTTCTTCTGAGGTTTGTCCTAAGTCAAAAAATTGTGTATTCGAAAAATAATGATTTCGATATTTTGAATTAACCCGAACATCCGAAAAACCAAACAATTTGAAAATCCAAAGTTTTCAAAATCTTTATTCCGTACTCCTTTGGCCTGAAATACATTTTCTGAACCCAACAATTAAATCTGGATTTTGAACTGCTCAATAATTCTGAATCCAGAATTGTGTCTCTCATTTCTAGATTCCTTCAAATAGCAATAATTTCAGATTTACTTAACTCTTTCCCTTTTTCTTACCACCTGAAAATATAAATTCCCGATTCTTTAATCTTTCACACACTGTCATTTTTCCCATTATTCACCGCTTCCTCTCGTTTTTTTTTGTCCTTCCATCCATTTTTTCTTTAACAAT</canonical>
            <polymorphic>GTAGACTAAAAATCCAGGTTATAACTGGGAAAACAGGGAAAAGAGCTAAAGAAAAAAGGTGATGATTTTTATGAGGTTGCGATTTTTCATCACTCCAGCGGGCCAGCTGTTATAGGTCTTTAGTGAAATCATTTTAAAAAAAACCATTTAGAAAAATCAGTGAACAGAGAAACAGATGAATAAACTACGAGCCATAAAACCTACAAAGAAACAGCAATAAAATTGGAATAAGGGGATTAATAAGCAAAATCAATGGTGGTTATTACATAAATCACACCGGAAACTGGATAGCGGAGCCTCGTAGCAAGACGGTTGGGACTTTGGGAAAGTGTTGTGGCAGATAATGTGCTCCTGGCAAGTCAATGCGGACAGTCAATGAGGATACCGCCAATACTAATGAGTACATGACCATTTCCGAAACTACTTTTATAAAAATTCTAATTGTGTGAATTTGAATCAAAAACAAGCGGGTCGGATTTCGGTATTCAGAAAGTTCCTARAATTCTGACCGAAATTTTTTTGAATGGATGAGGTTACGGTAATTGTTAGAATTTCTTTGAAATGTTGTTTGTTTGTTGTTGTTACTTTGCTTTTTTGCTTCTTCTGAGGTTTGTCCTAAGTCAAAAAATTGTGTATTCGAAAAATAATGATTTCGATATTTTGAATTAACCCGAACATCCGAAAAACCAAACAATTTGAAAATCCAAAGTTTTCAAAATCTTTATTCCGTACTCCTTTGGCCTGAAATACATTTTCTGAACCCAACAATTAAATCTGGATTTTGAACTGCTCAATAATTCTGAATCCAGAATTGTGTCTCTCATTTCTAGATTCCTTCAAATAGCAATAATTTCAGATTTACTTAACTCTTTCCCTTTTTCTTACCACCTGAAAATATAAATTCCCGATTCTTTAATCTTTCACACACTGTCATTTTTCCCATTATTCACCGCTTCCTCTCGTTTTTTTTTGTCCTTCCATCCATTTTTTCTTTAACAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>433 350 101 52 37 15 12</canonical_bands>
                <polymorphic_bands>433 350 101 64 37 15</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>497 330 173</canonical_bands>
                <polymorphic_bands>827 173</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGTGTTGTGGCAGATAATGT</pcr_primer_p1>
		<pcr_primer_p2>CAAACAAACAACATTTCAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGTGTTGTGGCAGATAATGTGCTCCTGGCAAGTCAATGCGGACAGTCAATGAGGATACCGCCAATACTAATGAGTACATGACCATTTCCGAAACTACTTTTATAAAAATTCTAATTGTGTGAATTTGAATCAAAAACAAGCGGGTCGGATTTCGGTATTCAGAAAGTTCCTAGAATTCTGACCGAAATTTTTTTGAATGGATGAGGTTACGGTAATTGTTAGAATTTCTTTGAAATGTTGTTTGTTTG</canonical_amplicon>
		<polymorphic_amplicon>AAAGTGTTGTGGCAGATAATGTGCTCCTGGCAAGTCAATGCGGACAGTCAATGAGGATACCGCCAATACTAATGAGTACATGACCATTTCCGAAACTACTTTTATAAAAATTCTAATTGTGTGAATTTGAATCAAAAACAAGCGGGTCGGATTTCGGTATTCAGAAAGTTCCTARAATTCTGACCGAAATTTTTTTGAATGGATGAGGTTACGGTAATTGTTAGAATTTCTTTGAAATGTTGTTTGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22304</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>270469</contig_pos>
        <strand>+</strand>
        <context>TTCTTCTGAG[G/T]TTTGTCCTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAATGTTGTTTGTTTGTTGTTGTTACTTTGCTTTTTTGCTTCTTCTGAG</left_flank>
        <right_flank>TTTGTCCTAAGTCAAAAAATTGTGTATTCGAAAAATAATGATTTCGATAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATAGGTCTTTAGTGAAATCATTTTAAAAAAAACCATTTAGAAAAATCAGTGAACAGAGAAACAGATGAATAAACTACGAGCCATAAAACCTACAAAGAAACAGCAATAAAATTGGAATAAGGGGATTAATAAGCAAAATCAATGGTGGTTATTACATAAATCACACCGGAAACTGGATAGCGGAGCCTCGTAGCAAGACGGTTGGGACTTTGGGAAAGTGTTGTGGCAGATAATGTGCTCCTGGCAAGTCAATGCGGACAGTCAATGAGGATACCGCCAATACTAATGAGTACATGACCATTTCCGAAACTACTTTTATAAAAATTCTAATTGTGTGAATTTGAATCAAAAACAAGCGGGTCGGATTTCGGTATTCAGAAAGTTCCTAGAATTCTGACCGAAATTTTTTTGAATGGATGAGGTTACGGTAATTGTTAGAATTTCTTTGAAATGTTGTTTGTTTGTTGTTGTTACTTTGCTTTTTTGCTTCTTCTGAGGTTTGTCCTAAGTCAAAAAATTGTGTATTCGAAAAATAATGATTTCGATATTTTGAATTAACCCGAACATCCGAAAAACCAAACAATTTGAAAATCCAAAGTTTTCAAAATCTTTATTCCGTACTCCTTTGGCCTGAAATACATTTTCTGAACCCAACAATTAAATCTGGATTTTGAACTGCTCAATAATTCTGAATCCAGAATTGTGTCTCTCATTTCTAGATTCCTTCAAATAGCAATAATTTCAGATTTACTTAACTCTTTCCCTTTTTCTTACCACCTGAAAATATAAATTCCCGATTCTTTAATCTTTCACACACTGTCATTTTTCCCATTATTCACCGCTTCCTCTCGTTTTTTTTTGTCCTTCCATCCATTTTTTCTTTAACAATGTTGCATATTTCCTGTTTCCTCATCAATCCTCATCTCGTTTGTATTTCTCTTACACTTTCTCCTTGAAAGATATGTTTACCTAGTCAAACACCTGTGGTTACCCTACTA</canonical>
            <polymorphic>TTATAGGTCTTTAGTGAAATCATTTTAAAAAAAACCATTTAGAAAAATCAGTGAACAGAGAAACAGATGAATAAACTACGAGCCATAAAACCTACAAAGAAACAGCAATAAAATTGGAATAAGGGGATTAATAAGCAAAATCAATGGTGGTTATTACATAAATCACACCGGAAACTGGATAGCGGAGCCTCGTAGCAAGACGGTTGGGACTTTGGGAAAGTGTTGTGGCAGATAATGTGCTCCTGGCAAGTCAATGCGGACAGTCAATGAGGATACCGCCAATACTAATGAGTACATGACCATTTCCGAAACTACTTTTATAAAAATTCTAATTGTGTGAATTTGAATCAAAAACAAGCGGGTCGGATTTCGGTATTCAGAAAGTTCCTAGAATTCTGACCGAAATTTTTTTGAATGGATGAGGTTACGGTAATTGTTAGAATTTCTTTGAAATGTTGTTTGTTTGTTGTTGTTACTTTGCTTTTTTGCTTCTTCTGAGKTTTGTCCTAAGTCAAAAAATTGTGTATTCGAAAAATAATGATTTCGATATTTTGAATTAACCCGAACATCCGAAAAACCAAACAATTTGAAAATCCAAAGTTTTCAAAATCTTTATTCCGTACTCCTTTGGCCTGAAATACATTTTCTGAACCCAACAATTAAATCTGGATTTTGAACTGCTCAATAATTCTGAATCCAGAATTGTGTCTCTCATTTCTAGATTCCTTCAAATAGCAATAATTTCAGATTTACTTAACTCTTTCCCTTTTTCTTACCACCTGAAAATATAAATTCCCGATTCTTTAATCTTTCACACACTGTCATTTTTCCCATTATTCACCGCTTCCTCTCGTTTTTTTTTGTCCTTCCATCCATTTTTTCTTTAACAATGTTGCATATTTCCTGTTTCCTCATCAATCCTCATCTCGTTTGTATTTCTCTTACACTTTCTCCTTGAAAGATATGTTTACCTAGTCAAACACCTGTGGTTACCCTACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTAATTGTTAGAATTTCTTTG</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAATCCAGATTTAATTGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGGTAATTGTTAGAATTTCTTTGAAATGTTGTTTGTTTGTTGTTGTTACTTTGCTTTTTTGCTTCTTCTGAGGTTTGTCCTAAGTCAAAAAATTGTGTATTCGAAAAATAATGATTTCGATATTTTGAATTAACCCGAACATCCGAAAAACCAAACAATTTGAAAATCCAAAGTTTTCAAAATCTTTATTCCGTACTCCTTTGGCCTGAAATACATTTTCTGAACCCAACAATTAAATCTGGATTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>CGGTAATTGTTAGAATTTCTTTGAAATGTTGTTTGTTTGTTGTTGTTACTTTGCTTTTTTGCTTCTTCTGAGKTTTGTCCTAAGTCAAAAAATTGTGTATTCGAAAAATAATGATTTCGATATTTTGAATTAACCCGAACATCCGAAAAACCAAACAATTTGAAAATCCAAAGTTTTCAAAATCTTTATTCCGTACTCCTTTGGCCTGAAATACATTTTCTGAACCCAACAATTAAATCTGGATTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22305</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>270480</contig_pos>
        <strand>+</strand>
        <context>TTTGTCCTAA[G/T]TCAAAAAAYT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTTTGTTGTTGTTACTTTGCTTTTTTGCTTCTTCTGAGGTTTGTCCTAA</left_flank>
        <right_flank>TCAAAAAATTGTGTATTCGAAAAATAATGATTTCGATATTTTGAATTAAC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGTGAAATCATTTTAAAAAAAACCATTTAGAAAAATCAGTGAACAGAGAAACAGATGAATAAACTACGAGCCATAAAACCTACAAAGAAACAGCAATAAAATTGGAATAAGGGGATTAATAAGCAAAATCAATGGTGGTTATTACATAAATCACACCGGAAACTGGATAGCGGAGCCTCGTAGCAAGACGGTTGGGACTTTGGGAAAGTGTTGTGGCAGATAATGTGCTCCTGGCAAGTCAATGCGGACAGTCAATGAGGATACCGCCAATACTAATGAGTACATGACCATTTCCGAAACTACTTTTATAAAAATTCTAATTGTGTGAATTTGAATCAAAAACAAGCGGGTCGGATTTCGGTATTCAGAAAGTTCCTAGAATTCTGACCGAAATTTTTTTGAATGGATGAGGTTACGGTAATTGTTAGAATTTCTTTGAAATGTTGTTTGTTTGTTGTTGTTACTTTGCTTTTTTGCTTCTTCTGAGGTTTGTCCTAAGTCAAAAAATTGTGTATTCGAAAAATAATGATTTCGATATTTTGAATTAACCCGAACATCCGAAAAACCAAACAATTTGAAAATCCAAAGTTTTCAAAATCTTTATTCCGTACTCCTTTGGCCTGAAATACATTTTCTGAACCCAACAATTAAATCTGGATTTTGAACTGCTCAATAATTCTGAATCCAGAATTGTGTCTCTCATTTCTAGATTCCTTCAAATAGCAATAATTTCAGATTTACTTAACTCTTTCCCTTTTTCTTACCACCTGAAAATATAAATTCCCGATTCTTTAATCTTTCACACACTGTCATTTTTCCCATTATTCACCGCTTCCTCTCGTTTTTTTTTGTCCTTCCATCCATTTTTTCTTTAACAATGTTGCATATTTCCTGTTTCCTCATCAATCCTCATCTCGTTTGTATTTCTCTTACACTTTCTCCTTGAAAGATATGTTTACCTAGTCAAACACCTGTGGTTACCCTACTACTACATTCCTG</canonical>
            <polymorphic>TAGTGAAATCATTTTAAAAAAAACCATTTAGAAAAATCAGTGAACAGAGAAACAGATGAATAAACTACGAGCCATAAAACCTACAAAGAAACAGCAATAAAATTGGAATAAGGGGATTAATAAGCAAAATCAATGGTGGTTATTACATAAATCACACCGGAAACTGGATAGCGGAGCCTCGTAGCAAGACGGTTGGGACTTTGGGAAAGTGTTGTGGCAGATAATGTGCTCCTGGCAAGTCAATGCGGACAGTCAATGAGGATACCGCCAATACTAATGAGTACATGACCATTTCCGAAACTACTTTTATAAAAATTCTAATTGTGTGAATTTGAATCAAAAACAAGCGGGTCGGATTTCGGTATTCAGAAAGTTCCTAGAATTCTGACCGAAATTTTTTTGAATGGATGAGGTTACGGTAATTGTTAGAATTTCTTTGAAATGTTGTTTGTTTGTTGTTGTTACTTTGCTTTTTTGCTTCTTCTGAGGTTTGTCCTAAKTCAAAAAATTGTGTATTCGAAAAATAATGATTTCGATATTTTGAATTAACCCGAACATCCGAAAAACCAAACAATTTGAAAATCCAAAGTTTTCAAAATCTTTATTCCGTACTCCTTTGGCCTGAAATACATTTTCTGAACCCAACAATTAAATCTGGATTTTGAACTGCTCAATAATTCTGAATCCAGAATTGTGTCTCTCATTTCTAGATTCCTTCAAATAGCAATAATTTCAGATTTACTTAACTCTTTCCCTTTTTCTTACCACCTGAAAATATAAATTCCCGATTCTTTAATCTTTCACACACTGTCATTTTTCCCATTATTCACCGCTTCCTCTCGTTTTTTTTTGTCCTTCCATCCATTTTTTCTTTAACAATGTTGCATATTTCCTGTTTCCTCATCAATCCTCATCTCGTTTGTATTTCTCTTACACTTTCTCCTTGAAAGATATGTTTACCTAGTCAAACACCTGTGGTTACCCTACTACTACATTCCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 484 12</canonical_bands>
                <polymorphic_bands>516 484</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGTAATTGTTAGAATTTCTTTG</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAATCCAGATTTAATTGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGGTAATTGTTAGAATTTCTTTGAAATGTTGTTTGTTTGTTGTTGTTACTTTGCTTTTTTGCTTCTTCTGAGGTTTGTCCTAAGTCAAAAAATTGTGTATTCGAAAAATAATGATTTCGATATTTTGAATTAACCCGAACATCCGAAAAACCAAACAATTTGAAAATCCAAAGTTTTCAAAATCTTTATTCCGTACTCCTTTGGCCTGAAATACATTTTCTGAACCCAACAATTAAATCTGGATTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>CGGTAATTGTTAGAATTTCTTTGAAATGTTGTTTGTTTGTTGTTGTTACTTTGCTTTTTTGCTTCTTCTGAGGTTTGTCCTAAKTCAAAAAATTGTGTATTCGAAAAATAATGATTTCGATATTTTGAATTAACCCGAACATCCGAAAAACCAAACAATTTGAAAATCCAAAGTTTTCAAAATCTTTATTCCGTACTCCTTTGGCCTGAAATACATTTTCTGAACCCAACAATTAAATCTGGATTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22306</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>270489</contig_pos>
        <strand>+</strand>
        <context>AKTCAAAAAA[C/T]TGTGTATTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGTTACTTTGCTTTTTTGCTTCTTCTGAGGTTTGTCCTAAGTCAAAAAA</left_flank>
        <right_flank>TGTGTATTCGAAAAATAATGATTTCGATATTTTGAATTAACCCGAACATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTTAAAAAAAACCATTTAGAAAAATCAGTGAACAGAGAAACAGATGAATAAACTACGAGCCATAAAACCTACAAAGAAACAGCAATAAAATTGGAATAAGGGGATTAATAAGCAAAATCAATGGTGGTTATTACATAAATCACACCGGAAACTGGATAGCGGAGCCTCGTAGCAAGACGGTTGGGACTTTGGGAAAGTGTTGTGGCAGATAATGTGCTCCTGGCAAGTCAATGCGGACAGTCAATGAGGATACCGCCAATACTAATGAGTACATGACCATTTCCGAAACTACTTTTATAAAAATTCTAATTGTGTGAATTTGAATCAAAAACAAGCGGGTCGGATTTCGGTATTCAGAAAGTTCCTAGAATTCTGACCGAAATTTTTTTGAATGGATGAGGTTACGGTAATTGTTAGAATTTCTTTGAAATGTTGTTTGTTTGTTGTTGTTACTTTGCTTTTTTGCTTCTTCTGAGGTTTGTCCTAAGTCAAAAAATTGTGTATTCGAAAAATAATGATTTCGATATTTTGAATTAACCCGAACATCCGAAAAACCAAACAATTTGAAAATCCAAAGTTTTCAAAATCTTTATTCCGTACTCCTTTGGCCTGAAATACATTTTCTGAACCCAACAATTAAATCTGGATTTTGAACTGCTCAATAATTCTGAATCCAGAATTGTGTCTCTCATTTCTAGATTCCTTCAAATAGCAATAATTTCAGATTTACTTAACTCTTTCCCTTTTTCTTACCACCTGAAAATATAAATTCCCGATTCTTTAATCTTTCACACACTGTCATTTTTCCCATTATTCACCGCTTCCTCTCGTTTTTTTTTGTCCTTCCATCCATTTTTTCTTTAACAATGTTGCATATTTCCTGTTTCCTCATCAATCCTCATCTCGTTTGTATTTCTCTTACACTTTCTCCTTGAAAGATATGTTTACCTAGTCAAACACCTGTGGTTACCCTACTACTACATTCCTGCTTGCTTCG</canonical>
            <polymorphic>CATTTTAAAAAAAACCATTTAGAAAAATCAGTGAACAGAGAAACAGATGAATAAACTACGAGCCATAAAACCTACAAAGAAACAGCAATAAAATTGGAATAAGGGGATTAATAAGCAAAATCAATGGTGGTTATTACATAAATCACACCGGAAACTGGATAGCGGAGCCTCGTAGCAAGACGGTTGGGACTTTGGGAAAGTGTTGTGGCAGATAATGTGCTCCTGGCAAGTCAATGCGGACAGTCAATGAGGATACCGCCAATACTAATGAGTACATGACCATTTCCGAAACTACTTTTATAAAAATTCTAATTGTGTGAATTTGAATCAAAAACAAGCGGGTCGGATTTCGGTATTCAGAAAGTTCCTAGAATTCTGACCGAAATTTTTTTGAATGGATGAGGTTACGGTAATTGTTAGAATTTCTTTGAAATGTTGTTTGTTTGTTGTTGTTACTTTGCTTTTTTGCTTCTTCTGAGGTTTGTCCTAAGTCAAAAAAYTGTGTATTCGAAAAATAATGATTTCGATATTTTGAATTAACCCGAACATCCGAAAAACCAAACAATTTGAAAATCCAAAGTTTTCAAAATCTTTATTCCGTACTCCTTTGGCCTGAAATACATTTTCTGAACCCAACAATTAAATCTGGATTTTGAACTGCTCAATAATTCTGAATCCAGAATTGTGTCTCTCATTTCTAGATTCCTTCAAATAGCAATAATTTCAGATTTACTTAACTCTTTCCCTTTTTCTTACCACCTGAAAATATAAATTCCCGATTCTTTAATCTTTCACACACTGTCATTTTTCCCATTATTCACCGCTTCCTCTCGTTTTTTTTTGTCCTTCCATCCATTTTTTCTTTAACAATGTTGCATATTTCCTGTTTCCTCATCAATCCTCATCTCGTTTGTATTTCTCTTACACTTTCTCCTTGAAAGATATGTTTACCTAGTCAAACACCTGTGGTTACCCTACTACTACATTCCTGCTTGCTTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>230 213 91 77 74 52 51 39 37 29 29 28 14 12 9 9 6</canonical_bands>
                <polymorphic_bands>230 213 114 91 74 52 51 39 29 29 28 14 12 9 9 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGTAATTGTTAGAATTTCTTTG</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAATCCAGATTTAATTGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGGTAATTGTTAGAATTTCTTTGAAATGTTGTTTGTTTGTTGTTGTTACTTTGCTTTTTTGCTTCTTCTGAGGTTTGTCCTAAGTCAAAAAATTGTGTATTCGAAAAATAATGATTTCGATATTTTGAATTAACCCGAACATCCGAAAAACCAAACAATTTGAAAATCCAAAGTTTTCAAAATCTTTATTCCGTACTCCTTTGGCCTGAAATACATTTTCTGAACCCAACAATTAAATCTGGATTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>CGGTAATTGTTAGAATTTCTTTGAAATGTTGTTTGTTTGTTGTTGTTACTTTGCTTTTTTGCTTCTTCTGAGGTTTGTCCTAAGTCAAAAAAYTGTGTATTCGAAAAATAATGATTTCGATATTTTGAATTAACCCGAACATCCGAAAAACCAAACAATTTGAAAATCCAAAGTTTTCAAAATCTTTATTCCGTACTCCTTTGGCCTGAAATACATTTTCTGAACCCAACAATTAAATCTGGATTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22307</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>270596</contig_pos>
        <strand>+</strand>
        <context>TCCGTACTCC[C/T]TTGGCCTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCAAACAATTTGAAAATCCAAAGTTTTCAAAATCTTTATTCCGTACTCC</left_flank>
        <right_flank>TTGGCCTGAAATACATTTTCTGAACCCAACAATTAAATCTGGATTTTGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAATAAGCAAAATCAATGGTGGTTATTACATAAATCACACCGGAAACTGGATAGCGGAGCCTCGTAGCAAGACGGTTGGGACTTTGGGAAAGTGTTGTGGCAGATAATGTGCTCCTGGCAAGTCAATGCGGACAGTCAATGAGGATACCGCCAATACTAATGAGTACATGACCATTTCCGAAACTACTTTTATAAAAATTCTAATTGTGTGAATTTGAATCAAAAACAAGCGGGTCGGATTTCGGTATTCAGAAAGTTCCTAGAATTCTGACCGAAATTTTTTTGAATGGATGAGGTTACGGTAATTGTTAGAATTTCTTTGAAATGTTGTTTGTTTGTTGTTGTTACTTTGCTTTTTTGCTTCTTCTGAGGTTTGTCCTAAGTCAAAAAATTGTGTATTCGAAAAATAATGATTTCGATATTTTGAATTAACCCGAACATCCGAAAAACCAAACAATTTGAAAATCCAAAGTTTTCAAAATCTTTATTCCGTACTCCTTTGGCCTGAAATACATTTTCTGAACCCAACAATTAAATCTGGATTTTGAACTGCTCAATAATTCTGAATCCAGAATTGTGTCTCTCATTTCTAGATTCCTTCAAATAGCAATAATTTCAGATTTACTTAACTCTTTCCCTTTTTCTTACCACCTGAAAATATAAATTCCCGATTCTTTAATCTTTCACACACTGTCATTTTTCCCATTATTCACCGCTTCCTCTCGTTTTTTTTTGTCCTTCCATCCATTTTTTCTTTAACAATGTTGCATATTTCCTGTTTCCTCATCAATCCTCATCTCGTTTGTATTTCTCTTACACTTTCTCCTTGAAAGATATGTTTACCTAGTCAAACACCTGTGGTTACCCTACTACTACATTCCTGCTTGCTTCGGAAATATGAAAAAAAAAACGAAAAAGTGAGAAACGGAAAGGAGAATTGAGAAGACGTTTTGAAACAACGTCATCATCACGTCTAAGCCCGAACCTCATAACTCGAAC</canonical>
            <polymorphic>TTAATAAGCAAAATCAATGGTGGTTATTACATAAATCACACCGGAAACTGGATAGCGGAGCCTCGTAGCAAGACGGTTGGGACTTTGGGAAAGTGTTGTGGCAGATAATGTGCTCCTGGCAAGTCAATGCGGACAGTCAATGAGGATACCGCCAATACTAATGAGTACATGACCATTTCCGAAACTACTTTTATAAAAATTCTAATTGTGTGAATTTGAATCAAAAACAAGCGGGTCGGATTTCGGTATTCAGAAAGTTCCTAGAATTCTGACCGAAATTTTTTTGAATGGATGAGGTTACGGTAATTGTTAGAATTTCTTTGAAATGTTGTTTGTTTGTTGTTGTTACTTTGCTTTTTTGCTTCTTCTGAGGTTTGTCCTAAGTCAAAAAATTGTGTATTCGAAAAATAATGATTTCGATATTTTGAATTAACCCGAACATCCGAAAAACCAAACAATTTGAAAATCCAAAGTTTTCAAAATCTTTATTCCGTACTCCYTTGGCCTGAAATACATTTTCTGAACCCAACAATTAAATCTGGATTTTGAACTGCTCAATAATTCTGAATCCAGAATTGTGTCTCTCATTTCTAGATTCCTTCAAATAGCAATAATTTCAGATTTACTTAACTCTTTCCCTTTTTCTTACCACCTGAAAATATAAATTCCCGATTCTTTAATCTTTCACACACTGTCATTTTTCCCATTATTCACCGCTTCCTCTCGTTTTTTTTTGTCCTTCCATCCATTTTTTCTTTAACAATGTTGCATATTTCCTGTTTCCTCATCAATCCTCATCTCGTTTGTATTTCTCTTACACTTTCTCCTTGAAAGATATGTTTACCTAGTCAAACACCTGTGGTTACCCTACTACTACATTCCTGCTTGCTTCGGAAATATGAAAAAAAAAACGAAAAAGTGAGAAACGGAAAGGAGAATTGAGAAGACGTTTTGAAACAACGTCATCATCACGTCTAAGCCCGAACCTCATAACTCGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTGTTTGTTTGTTGTTGTTAC</pcr_primer_p1>
		<pcr_primer_p2>GATTCAGAATTATTGAGCAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TGTTGTTTGTTTGTTGTTGTTACTTTGCTTTTTTGCTTCTTCTGAGGTTTGTCCTAAGTCAAAAAATTGTGTATTCGAAAAATAATGATTTCGATATTTTGAATTAACCCGAACATCCGAAAAACCAAACAATTTGAAAATCCAAAGTTTTCAAAATCTTTATTCCGTACTCCTTTGGCCTGAAATACATTTTCTGAACCCAACAATTAAATCTGGATTTTGAACTGCTCAATAATTCTGAATC</canonical_amplicon>
		<polymorphic_amplicon>TGTTGTTTGTTTGTTGTTGTTACTTTGCTTTTTTGCTTCTTCTGAGGTTTGTCCTAAGTCAAAAAATTGTGTATTCGAAAAATAATGATTTCGATATTTTGAATTAACCCGAACATCCGAAAAACCAAACAATTTGAAAATCCAAAGTTTTCAAAATCTTTATTCCGTACTCCYTTGGCCTGAAATACATTTTCTGAACCCAACAATTAAATCTGGATTTTGAACTGCTCAATAATTCTGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22308</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>270609</contig_pos>
        <strand>+</strand>
        <context>GGCCTGAAAT[A/T]CATTTTCTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATCCAAAGTTTTCAAAATCTTTATTCCGTACTCCTTTGGCCTGAAAT</left_flank>
        <right_flank>CATTTTCTGAACCCAACAATTAAATCTGGATTTTGAACTGCTCAATAATT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAATGGTGGTTATTACATAAATCACACCGGAAACTGGATAGCGGAGCCTCGTAGCAAGACGGTTGGGACTTTGGGAAAGTGTTGTGGCAGATAATGTGCTCCTGGCAAGTCAATGCGGACAGTCAATGAGGATACCGCCAATACTAATGAGTACATGACCATTTCCGAAACTACTTTTATAAAAATTCTAATTGTGTGAATTTGAATCAAAAACAAGCGGGTCGGATTTCGGTATTCAGAAAGTTCCTAGAATTCTGACCGAAATTTTTTTGAATGGATGAGGTTACGGTAATTGTTAGAATTTCTTTGAAATGTTGTTTGTTTGTTGTTGTTACTTTGCTTTTTTGCTTCTTCTGAGGTTTGTCCTAAGTCAAAAAATTGTGTATTCGAAAAATAATGATTTCGATATTTTGAATTAACCCGAACATCCGAAAAACCAAACAATTTGAAAATCCAAAGTTTTCAAAATCTTTATTCCGTACTCCTTTGGCCTGAAATACATTTTCTGAACCCAACAATTAAATCTGGATTTTGAACTGCTCAATAATTCTGAATCCAGAATTGTGTCTCTCATTTCTAGATTCCTTCAAATAGCAATAATTTCAGATTTACTTAACTCTTTCCCTTTTTCTTACCACCTGAAAATATAAATTCCCGATTCTTTAATCTTTCACACACTGTCATTTTTCCCATTATTCACCGCTTCCTCTCGTTTTTTTTTGTCCTTCCATCCATTTTTTCTTTAACAATGTTGCATATTTCCTGTTTCCTCATCAATCCTCATCTCGTTTGTATTTCTCTTACACTTTCTCCTTGAAAGATATGTTTACCTAGTCAAACACCTGTGGTTACCCTACTACTACATTCCTGCTTGCTTCGGAAATATGAAAAAAAAAACGAAAAAGTGAGAAACGGAAAGGAGAATTGAGAAGACGTTTTGAAACAACGTCATCATCACGTCTAAGCCCGAACCTCATAACTCGAACGTCCCCATACTAT</canonical>
            <polymorphic>TCAATGGTGGTTATTACATAAATCACACCGGAAACTGGATAGCGGAGCCTCGTAGCAAGACGGTTGGGACTTTGGGAAAGTGTTGTGGCAGATAATGTGCTCCTGGCAAGTCAATGCGGACAGTCAATGAGGATACCGCCAATACTAATGAGTACATGACCATTTCCGAAACTACTTTTATAAAAATTCTAATTGTGTGAATTTGAATCAAAAACAAGCGGGTCGGATTTCGGTATTCAGAAAGTTCCTAGAATTCTGACCGAAATTTTTTTGAATGGATGAGGTTACGGTAATTGTTAGAATTTCTTTGAAATGTTGTTTGTTTGTTGTTGTTACTTTGCTTTTTTGCTTCTTCTGAGGTTTGTCCTAAGTCAAAAAATTGTGTATTCGAAAAATAATGATTTCGATATTTTGAATTAACCCGAACATCCGAAAAACCAAACAATTTGAAAATCCAAAGTTTTCAAAATCTTTATTCCGTACTCCTTTGGCCTGAAATWCATTTTCTGAACCCAACAATTAAATCTGGATTTTGAACTGCTCAATAATTCTGAATCCAGAATTGTGTCTCTCATTTCTAGATTCCTTCAAATAGCAATAATTTCAGATTTACTTAACTCTTTCCCTTTTTCTTACCACCTGAAAATATAAATTCCCGATTCTTTAATCTTTCACACACTGTCATTTTTCCCATTATTCACCGCTTCCTCTCGTTTTTTTTTGTCCTTCCATCCATTTTTTCTTTAACAATGTTGCATATTTCCTGTTTCCTCATCAATCCTCATCTCGTTTGTATTTCTCTTACACTTTCTCCTTGAAAGATATGTTTACCTAGTCAAACACCTGTGGTTACCCTACTACTACATTCCTGCTTGCTTCGGAAATATGAAAAAAAAAACGAAAAAGTGAGAAACGGAAAGGAGAATTGAGAAGACGTTTTGAAACAACGTCATCATCACGTCTAAGCCCGAACCTCATAACTCGAACGTCCCCATACTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTGTTTGTTTGTTGTTGTTAC</pcr_primer_p1>
		<pcr_primer_p2>GATTCAGAATTATTGAGCAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TGTTGTTTGTTTGTTGTTGTTACTTTGCTTTTTTGCTTCTTCTGAGGTTTGTCCTAAGTCAAAAAATTGTGTATTCGAAAAATAATGATTTCGATATTTTGAATTAACCCGAACATCCGAAAAACCAAACAATTTGAAAATCCAAAGTTTTCAAAATCTTTATTCCGTACTCCTTTGGCCTGAAATACATTTTCTGAACCCAACAATTAAATCTGGATTTTGAACTGCTCAATAATTCTGAATC</canonical_amplicon>
		<polymorphic_amplicon>TGTTGTTTGTTTGTTGTTGTTACTTTGCTTTTTTGCTTCTTCTGAGGTTTGTCCTAAGTCAAAAAATTGTGTATTCGAAAAATAATGATTTCGATATTTTGAATTAACCCGAACATCCGAAAAACCAAACAATTTGAAAATCCAAAGTTTTCAAAATCTTTATTCCGTACTCCTTTGGCCTGAAATWCATTTTCTGAACCCAACAATTAAATCTGGATTTTGAACTGCTCAATAATTCTGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22309</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>270701</contig_pos>
        <strand>+</strand>
        <context>ATTCCTTCAA[A/G]TAGCAATAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAATAATTCTGAATCCAGAATTGTGTCTCTCATTTCTAGATTCCTTCAA</left_flank>
        <right_flank>TAGCAATAATTTCAGATTTACTTAACTCTTTCCCTTTTTCTTACCACCTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATGTGCTCCTGGCAAGTCAATGCGGACAGTCAATGAGGATACCGCCAATACTAATGAGTACATGACCATTTCCGAAACTACTTTTATAAAAATTCTAATTGTGTGAATTTGAATCAAAAACAAGCGGGTCGGATTTCGGTATTCAGAAAGTTCCTAGAATTCTGACCGAAATTTTTTTGAATGGATGAGGTTACGGTAATTGTTAGAATTTCTTTGAAATGTTGTTTGTTTGTTGTTGTTACTTTGCTTTTTTGCTTCTTCTGAGGTTTGTCCTAAGTCAAAAAATTGTGTATTCGAAAAATAATGATTTCGATATTTTGAATTAACCCGAACATCCGAAAAACCAAACAATTTGAAAATCCAAAGTTTTCAAAATCTTTATTCCGTACTCCTTTGGCCTGAAATACATTTTCTGAACCCAACAATTAAATCTGGATTTTGAACTGCTCAATAATTCTGAATCCAGAATTGTGTCTCTCATTTCTAGATTCCTTCAAATAGCAATAATTTCAGATTTACTTAACTCTTTCCCTTTTTCTTACCACCTGAAAATATAAATTCCCGATTCTTTAATCTTTCACACACTGTCATTTTTCCCATTATTCACCGCTTCCTCTCGTTTTTTTTTGTCCTTCCATCCATTTTTTCTTTAACAATGTTGCATATTTCCTGTTTCCTCATCAATCCTCATCTCGTTTGTATTTCTCTTACACTTTCTCCTTGAAAGATATGTTTACCTAGTCAAACACCTGTGGTTACCCTACTACTACATTCCTGCTTGCTTCGGAAATATGAAAAAAAAAACGAAAAAGTGAGAAACGGAAAGGAGAATTGAGAAGACGTTTTGAAACAACGTCATCATCACGTCTAAGCCCGAACCTCATAACTCGAACGTCCCCATACTATCGCCACCAACGATCTATATATTCGTTTTTCTCATTTTACACTCTCCCCCCCCCCCTTTTTGCTGCTTCCAGCCATTCTCATCTCATTTGAAG</canonical>
            <polymorphic>TAATGTGCTCCTGGCAAGTCAATGCGGACAGTCAATGAGGATACCGCCAATACTAATGAGTACATGACCATTTCCGAAACTACTTTTATAAAAATTCTAATTGTGTGAATTTGAATCAAAAACAAGCGGGTCGGATTTCGGTATTCAGAAAGTTCCTAGAATTCTGACCGAAATTTTTTTGAATGGATGAGGTTACGGTAATTGTTAGAATTTCTTTGAAATGTTGTTTGTTTGTTGTTGTTACTTTGCTTTTTTGCTTCTTCTGAGGTTTGTCCTAAGTCAAAAAATTGTGTATTCGAAAAATAATGATTTCGATATTTTGAATTAACCCGAACATCCGAAAAACCAAACAATTTGAAAATCCAAAGTTTTCAAAATCTTTATTCCGTACTCCTTTGGCCTGAAATACATTTTCTGAACCCAACAATTAAATCTGGATTTTGAACTGCTCAATAATTCTGAATCCAGAATTGTGTCTCTCATTTCTAGATTCCTTCAARTAGCAATAATTTCAGATTTACTTAACTCTTTCCCTTTTTCTTACCACCTGAAAATATAAATTCCCGATTCTTTAATCTTTCACACACTGTCATTTTTCCCATTATTCACCGCTTCCTCTCGTTTTTTTTTGTCCTTCCATCCATTTTTTCTTTAACAATGTTGCATATTTCCTGTTTCCTCATCAATCCTCATCTCGTTTGTATTTCTCTTACACTTTCTCCTTGAAAGATATGTTTACCTAGTCAAACACCTGTGGTTACCCTACTACTACATTCCTGCTTGCTTCGGAAATATGAAAAAAAAAACGAAAAAGTGAGAAACGGAAAGGAGAATTGAGAAGACGTTTTGAAACAACGTCATCATCACGTCTAAGCCCGAACCTCATAACTCGAACGTCCCCATACTATCGCCACCAACGATCTATATATTCGTTTTTCTCATTTTACACTCTCCCCCCCCCCCTTTTTGCTGCTTCCAGCCATTCTCATCTCATTTGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAATTAAATCTGGATTTTGAAC</pcr_primer_p1>
		<pcr_primer_p2>GGAAATATGCAACATTGTTAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACAATTAAATCTGGATTTTGAACTGCTCAATAATTCTGAATCCAGAATTGTGTCTCTCATTTCTAGATTCCTTCAAATAGCAATAATTTCAGATTTACTTAACTCTTTCCCTTTTTCTTACCACCTGAAAATATAAATTCCCGATTCTTTAATCTTTCACACACTGTCATTTTTCCCATTATTCACCGCTTCCTCTCGTTTTTTTTTGTCCTTCCATCCATTTTTTCTTTAACAATGTTGCATATTTCC</canonical_amplicon>
		<polymorphic_amplicon>AACAATTAAATCTGGATTTTGAACTGCTCAATAATTCTGAATCCAGAATTGTGTCTCTCATTTCTAGATTCCTTCAARTAGCAATAATTTCAGATTTACTTAACTCTTTCCCTTTTTCTTACCACCTGAAAATATAAATTCCCGATTCTTTAATCTTTCACACACTGTCATTTTTCCCATTATTCACCGCTTCCTCTCGTTTTTTTTTGTCCTTCCATCCATTTTTTCTTTAACAATGTTGCATATTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22310</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>270729</contig_pos>
        <strand>+</strand>
        <context>TTACTTAACT[A/C]TTTCCCTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTCATTTCTAGATTCCTTCAAATAGCAATAATTTCAGATTTACTTAACT</left_flank>
        <right_flank>TTTCCCTTTTTCTTACCACCTGAAAATATAAATTCCCGATTCTTTAATCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTCAATGAGGATACCGCCAATACTAATGAGTACATGACCATTTCCGAAACTACTTTTATAAAAATTCTAATTGTGTGAATTTGAATCAAAAACAAGCGGGTCGGATTTCGGTATTCAGAAAGTTCCTAGAATTCTGACCGAAATTTTTTTGAATGGATGAGGTTACGGTAATTGTTAGAATTTCTTTGAAATGTTGTTTGTTTGTTGTTGTTACTTTGCTTTTTTGCTTCTTCTGAGGTTTGTCCTAAGTCAAAAAATTGTGTATTCGAAAAATAATGATTTCGATATTTTGAATTAACCCGAACATCCGAAAAACCAAACAATTTGAAAATCCAAAGTTTTCAAAATCTTTATTCCGTACTCCTTTGGCCTGAAATACATTTTCTGAACCCAACAATTAAATCTGGATTTTGAACTGCTCAATAATTCTGAATCCAGAATTGTGTCTCTCATTTCTAGATTCCTTCAAATAGCAATAATTTCAGATTTACTTAACTCTTTCCCTTTTTCTTACCACCTGAAAATATAAATTCCCGATTCTTTAATCTTTCACACACTGTCATTTTTCCCATTATTCACCGCTTCCTCTCGTTTTTTTTTGTCCTTCCATCCATTTTTTCTTTAACAATGTTGCATATTTCCTGTTTCCTCATCAATCCTCATCTCGTTTGTATTTCTCTTACACTTTCTCCTTGAAAGATATGTTTACCTAGTCAAACACCTGTGGTTACCCTACTACTACATTCCTGCTTGCTTCGGAAATATGAAAAAAAAAACGAAAAAGTGAGAAACGGAAAGGAGAATTGAGAAGACGTTTTGAAACAACGTCATCATCACGTCTAAGCCCGAACCTCATAACTCGAACGTCCCCATACTATCGCCACCAACGATCTATATATTCGTTTTTCTCATTTTACACTCTCCCCCCCCCCCTTTTTGCTGCTTCCAGCCATTCTCATCTCATTTGAAGATATCCGATAGCAAGTACAATACCTCCT</canonical>
            <polymorphic>CAGTCAATGAGGATACCGCCAATACTAATGAGTACATGACCATTTCCGAAACTACTTTTATAAAAATTCTAATTGTGTGAATTTGAATCAAAAACAAGCGGGTCGGATTTCGGTATTCAGAAAGTTCCTAGAATTCTGACCGAAATTTTTTTGAATGGATGAGGTTACGGTAATTGTTAGAATTTCTTTGAAATGTTGTTTGTTTGTTGTTGTTACTTTGCTTTTTTGCTTCTTCTGAGGTTTGTCCTAAGTCAAAAAATTGTGTATTCGAAAAATAATGATTTCGATATTTTGAATTAACCCGAACATCCGAAAAACCAAACAATTTGAAAATCCAAAGTTTTCAAAATCTTTATTCCGTACTCCTTTGGCCTGAAATACATTTTCTGAACCCAACAATTAAATCTGGATTTTGAACTGCTCAATAATTCTGAATCCAGAATTGTGTCTCTCATTTCTAGATTCCTTCAAATAGCAATAATTTCAGATTTACTTAACTMTTTCCCTTTTTCTTACCACCTGAAAATATAAATTCCCGATTCTTTAATCTTTCACACACTGTCATTTTTCCCATTATTCACCGCTTCCTCTCGTTTTTTTTTGTCCTTCCATCCATTTTTTCTTTAACAATGTTGCATATTTCCTGTTTCCTCATCAATCCTCATCTCGTTTGTATTTCTCTTACACTTTCTCCTTGAAAGATATGTTTACCTAGTCAAACACCTGTGGTTACCCTACTACTACATTCCTGCTTGCTTCGGAAATATGAAAAAAAAAACGAAAAAGTGAGAAACGGAAAGGAGAATTGAGAAGACGTTTTGAAACAACGTCATCATCACGTCTAAGCCCGAACCTCATAACTCGAACGTCCCCATACTATCGCCACCAACGATCTATATATTCGTTTTTCTCATTTTACACTCTCCCCCCCCCCCTTTTTGCTGCTTCCAGCCATTCTCATCTCATTTGAAGATATCCGATAGCAAGTACAATACCTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAATTAAATCTGGATTTTGAAC</pcr_primer_p1>
		<pcr_primer_p2>GGAAATATGCAACATTGTTAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACAATTAAATCTGGATTTTGAACTGCTCAATAATTCTGAATCCAGAATTGTGTCTCTCATTTCTAGATTCCTTCAAATAGCAATAATTTCAGATTTACTTAACTCTTTCCCTTTTTCTTACCACCTGAAAATATAAATTCCCGATTCTTTAATCTTTCACACACTGTCATTTTTCCCATTATTCACCGCTTCCTCTCGTTTTTTTTTGTCCTTCCATCCATTTTTTCTTTAACAATGTTGCATATTTCC</canonical_amplicon>
		<polymorphic_amplicon>AACAATTAAATCTGGATTTTGAACTGCTCAATAATTCTGAATCCAGAATTGTGTCTCTCATTTCTAGATTCCTTCAAATAGCAATAATTTCAGATTTACTTAACTMTTTCCCTTTTTCTTACCACCTGAAAATATAAATTCCCGATTCTTTAATCTTTCACACACTGTCATTTTTCCCATTATTCACCGCTTCCTCTCGTTTTTTTTTGTCCTTCCATCCATTTTTTCTTTAACAATGTTGCATATTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22311</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>276538</contig_pos>
        <strand>+</strand>
        <context>GATTTCAGAG[C/T]CGTCTTCTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAGTGGCTTGATTGGTGTTAGCAGGTGTTGAACAGCAGGGATTTCAGAG</left_flank>
        <right_flank>CGTCTTCTAGCTGGAACGCAAAAAAAGTTTACAAATATTTTTTAAATGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATAAACAACCAAAGACAGAAACTTCTTTTTTGAGAAATATAATATTACCGTATTTCCTCTAATACACCCATGAAACTCAATTATCTCCATTTCAGTAAGAGCTATCGAAAAATTGTAAACTGATAAAGTGTTGGTGATATTAAGATAAGCATTTTATCAGTTGACAAATTTTTGATATCTTTGACAGGAATGTTGAAATATACGATTTGGATAGGTTTCTATTAAAGGAAATACGGTATTAGTTTTGAAAAACATTTGGAATGCGAATATTTGTGATCATGTTTATTTTTTCAATTGTTTTTGAGGGATTCGGCTCATTGAGCCGTGGCTGTCCTGAGTTCCTCCATCTTTAGAGCCGCTAGTACATGATTCCTCTCAATGTTGGACCCCATGCTGCTTGCAATATTCATTAGCATTTCCTGAGGGCTTATTGGCTTGGGGATCTGTACAAGTGGCTTGATTGGTGTTAGCAGGTGTTGAACAGCAGGGATTTCAGAGTCGTCTTCTAGCTGGAACGCAAAAAAAGTTTACAAATATTTTTTAAATGATATCTTACCATTGAAGTTGTAATCGACGGTCGTTTAATTGCTGGTTGCCCAATAATATCTACAATATCCAGCGAACGTTTTCTTCCAGGAATTTCGTCTTCCAAGGATGAGAAATCAGATGACAAGCGGTTCATTTGAGCTTGTCCCTTTAAAAGTAACTGCTCTTCCTTTGCAATTTCAGCTTGTATACTTTCCACAGCTTGGATAGTGTTAACAAATGTGTCAGCAGCGTTTAAACTGCACAGCATTTTCAATAGAACTGAAATTTTCGAATTAAAATTCAATATAAGGATTTTAAACTCACTATTAGGACATGTGGAAATTCCTTTAATCTTATCTCTCATATTATTGATTTTATTCACAATCAGATCTATAATATTGTCTCCAAACCCAGCACTAATCATTTCTGCAATCATCTCCTGCGGATTCTGCTCCGTATTCCCTGTTTGAA</canonical>
            <polymorphic>GATAAACAACCAAAGACAGAAACTTCTTTTTTGAGAAATATAATATTACCGTATTTCCTCTAATACACCCATGAAACTCAATTATCTCCATTTCAGTAAGAGCTATCGAAAAATTGTAAACTGATAAAGTGTTGGTGATATTAAGATAAGCATTTTATCAGTTGACAAATTTTTGATATCTTTGACAGGAATGTTGAAATATACGATTTGGATAGGTTTCTATTAAAGGAAATACGGTATTAGTTTTGAAAAACATTTGGAATGCGAATATTTGTGATCATGTTTATTTTTTCAATTGTTTTTGAGGGATTCGGCTCATTGAGCCGTGGCTGTCCTGAGTTCCTCCATCTTTAGAGCCGCTAGTACATGATTCCTCTCAATGTTGGACCCCATGCTGCTTGCAATATTCATTAGCATTTCCTGAGGGCTTATTGGCTTGGGGATCTGTACAAGTGGCTTGATTGGTGTTAGCAGGTGTTGAACAGCAGGGATTTCAGAGYCGTCTTCTAGCTGGAACGCAAAAAAAGTTTACAAATATTTTTTAAATGATATCTTACCATTGAAGTTGTAATCGACGGTCGTTTAATTGCTGGTTGCCCAATAATATCTACAATATCCAGCGAACGTTTTCTTCCAGGAATTTCGTCTTCCAAGGATGAGAAATCAGATGACAAGCGGTTCATTTGAGCTTGTCCCTTTAAAAGTAACTGCTCTTCCTTTGCAATTTCAGCTTGTATACTTTCCACAGCTTGGATAGTGTTAACAAATGTGTCAGCAGCGTTTAAACTGCACAGCATTTTCAATAGAACTGAAATTTTCGAATTAAAATTCAATATAAGGATTTTAAACTCACTATTAGGACATGTGGAAATTCCTTTAATCTTATCTCTCATATTATTGATTTTATTCACAATCAGATCTATAATATTGTCTCCAAACCCAGCACTAATCATTTCTGCAATCATCTCCTGCGGATTCTGCTCCGTATTCCCTGTTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>477 308 128 61 26</canonical_bands>
                <polymorphic_bands>605 308 61 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTACATGATTCCTCTCAATGTT</pcr_primer_p1>
		<pcr_primer_p2>GTAGATATTATTGGGCAACCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTACATGATTCCTCTCAATGTTGGACCCCATGCTGCTTGCAATATTCATTAGCATTTCCTGAGGGCTTATTGGCTTGGGGATCTGTACAAGTGGCTTGATTGGTGTTAGCAGGTGTTGAACAGCAGGGATTTCAGAGTCGTCTTCTAGCTGGAACGCAAAAAAAGTTTACAAATATTTTTTAAATGATATCTTACCATTGAAGTTGTAATCGACGGTCGTTTAATTGCTGGTTGCCCAATAATATCTAC</canonical_amplicon>
		<polymorphic_amplicon>AGTACATGATTCCTCTCAATGTTGGACCCCATGCTGCTTGCAATATTCATTAGCATTTCCTGAGGGCTTATTGGCTTGGGGATCTGTACAAGTGGCTTGATTGGTGTTAGCAGGTGTTGAACAGCAGGGATTTCAGAGYCGTCTTCTAGCTGGAACGCAAAAAAAGTTTACAAATATTTTTTAAATGATATCTTACCATTGAAGTTGTAATCGACGGTCGTTTAATTGCTGGTTGCCCAATAATATCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22312</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>276718</contig_pos>
        <strand>+</strand>
        <context>GACAAGCGGT[G/T]CATTTGAGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTTCCAGGAATTTCGTCTTCCAAGGATGAGAAATCAGATGACAAGCGGT</left_flank>
        <right_flank>CATTTGAGCTTGTCCCTTTAAAAGTAACTGCTCTTCCTTTGCAATTTCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGACAGGAATGTTGAAATATACGATTTGGATAGGTTTCTATTAAAGGAAATACGGTATTAGTTTTGAAAAACATTTGGAATGCGAATATTTGTGATCATGTTTATTTTTTCAATTGTTTTTGAGGGATTCGGCTCATTGAGCCGTGGCTGTCCTGAGTTCCTCCATCTTTAGAGCCGCTAGTACATGATTCCTCTCAATGTTGGACCCCATGCTGCTTGCAATATTCATTAGCATTTCCTGAGGGCTTATTGGCTTGGGGATCTGTACAAGTGGCTTGATTGGTGTTAGCAGGTGTTGAACAGCAGGGATTTCAGAGTCGTCTTCTAGCTGGAACGCAAAAAAAGTTTACAAATATTTTTTAAATGATATCTTACCATTGAAGTTGTAATCGACGGTCGTTTAATTGCTGGTTGCCCAATAATATCTACAATATCCAGCGAACGTTTTCTTCCAGGAATTTCGTCTTCCAAGGATGAGAAATCAGATGACAAGCGGTTCATTTGAGCTTGTCCCTTTAAAAGTAACTGCTCTTCCTTTGCAATTTCAGCTTGTATACTTTCCACAGCTTGGATAGTGTTAACAAATGTGTCAGCAGCGTTTAAACTGCACAGCATTTTCAATAGAACTGAAATTTTCGAATTAAAATTCAATATAAGGATTTTAAACTCACTATTAGGACATGTGGAAATTCCTTTAATCTTATCTCTCATATTATTGATTTTATTCACAATCAGATCTATAATATTGTCTCCAAACCCAGCACTAATCATTTCTGCAATCATCTCCTGCGGATTCTGCTCCGTATTCCCTGTTTGAAATTTGGCATCTGGATTCCAAAACATTGACGGTTGAGGTGGAACCGTTTGCAGAAGAGAATTAGTTGCAGTCATCCGTTGTTGTTGTTGCTGCTGCTGGAATAGATGCGTGGCGGTGTCCTCCATATTTGTCGTTTCCTCTTTGATAGAAGTGGCTGTGAATAGGGGCAATTGTGATTGGG</canonical>
            <polymorphic>TTTGACAGGAATGTTGAAATATACGATTTGGATAGGTTTCTATTAAAGGAAATACGGTATTAGTTTTGAAAAACATTTGGAATGCGAATATTTGTGATCATGTTTATTTTTTCAATTGTTTTTGAGGGATTCGGCTCATTGAGCCGTGGCTGTCCTGAGTTCCTCCATCTTTAGAGCCGCTAGTACATGATTCCTCTCAATGTTGGACCCCATGCTGCTTGCAATATTCATTAGCATTTCCTGAGGGCTTATTGGCTTGGGGATCTGTACAAGTGGCTTGATTGGTGTTAGCAGGTGTTGAACAGCAGGGATTTCAGAGTCGTCTTCTAGCTGGAACGCAAAAAAAGTTTACAAATATTTTTTAAATGATATCTTACCATTGAAGTTGTAATCGACGGTCGTTTAATTGCTGGTTGCCCAATAATATCTACAATATCCAGCGAACGTTTTCTTCCAGGAATTTCGTCTTCCAAGGATGAGAAATCAGATGACAAGCGGTKCATTTGAGCTTGTCCCTTTAAAAGTAACTGCTCTTCCTTTGCAATTTCAGCTTGTATACTTTCCACAGCTTGGATAGTGTTAACAAATGTGTCAGCAGCGTTTAAACTGCACAGCATTTTCAATAGAACTGAAATTTTCGAATTAAAATTCAATATAAGGATTTTAAACTCACTATTAGGACATGTGGAAATTCCTTTAATCTTATCTCTCATATTATTGATTTTATTCACAATCAGATCTATAATATTGTCTCCAAACCCAGCACTAATCATTTCTGCAATCATCTCCTGCGGATTCTGCTCCGTATTCCCTGTTTGAAATTTGGCATCTGGATTCCAAAACATTGACGGTTGAGGTGGAACCGTTTGCAGAAGAGAATTAGTTGCAGTCATCCGTTGTTGTTGTTGCTGCTGCTGGAATAGATGCGTGGCGGTGTCCTCCATATTTGTCGTTTCCTCTTTGATAGAAGTGGCTGTGAATAGGGGCAATTGTGATTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGTTTTCTTCCAGGAATTT</pcr_primer_p1>
		<pcr_primer_p2>AATTTCCACATGTCCTAATAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGTTTTCTTCCAGGAATTTCGTCTTCCAAGGATGAGAAATCAGATGACAAGCGGTTCATTTGAGCTTGTCCCTTTAAAAGTAACTGCTCTTCCTTTGCAATTTCAGCTTGTATACTTTCCACAGCTTGGATAGTGTTAACAAATGTGTCAGCAGCGTTTAAACTGCACAGCATTTTCAATAGAACTGAAATTTTCGAATTAAAATTCAATATAAGGATTTTAAACTCACTATTAGGACATGTGGAAATT</canonical_amplicon>
		<polymorphic_amplicon>ACGTTTTCTTCCAGGAATTTCGTCTTCCAAGGATGAGAAATCAGATGACAAGCGGTKCATTTGAGCTTGTCCCTTTAAAAGTAACTGCTCTTCCTTTGCAATTTCAGCTTGTATACTTTCCACAGCTTGGATAGTGTTAACAAATGTGTCAGCAGCGTTTAAACTGCACAGCATTTTCAATAGAACTGAAATTTTCGAATTAAAATTCAATATAAGGATTTTAAACTCACTATTAGGACATGTGGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22313</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>276806</contig_pos>
        <strand>+</strand>
        <context>TGTTAACAAA[C/T]GTGTCAGCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGCAATTTCAGCTTGTATACTTTCCACAGCTTGGATAGTGTTAACAAA</left_flank>
        <right_flank>GTGTCAGCAGCGTTTAAACTGCACAGCATTTTCAATAGAACTGAAATTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTGTGATCATGTTTATTTTTTCAATTGTTTTTGAGGGATTCGGCTCATTGAGCCGTGGCTGTCCTGAGTTCCTCCATCTTTAGAGCCGCTAGTACATGATTCCTCTCAATGTTGGACCCCATGCTGCTTGCAATATTCATTAGCATTTCCTGAGGGCTTATTGGCTTGGGGATCTGTACAAGTGGCTTGATTGGTGTTAGCAGGTGTTGAACAGCAGGGATTTCAGAGTCGTCTTCTAGCTGGAACGCAAAAAAAGTTTACAAATATTTTTTAAATGATATCTTACCATTGAAGTTGTAATCGACGGTCGTTTAATTGCTGGTTGCCCAATAATATCTACAATATCCAGCGAACGTTTTCTTCCAGGAATTTCGTCTTCCAAGGATGAGAAATCAGATGACAAGCGGTTCATTTGAGCTTGTCCCTTTAAAAGTAACTGCTCTTCCTTTGCAATTTCAGCTTGTATACTTTCCACAGCTTGGATAGTGTTAACAAATGTGTCAGCAGCGTTTAAACTGCACAGCATTTTCAATAGAACTGAAATTTTCGAATTAAAATTCAATATAAGGATTTTAAACTCACTATTAGGACATGTGGAAATTCCTTTAATCTTATCTCTCATATTATTGATTTTATTCACAATCAGATCTATAATATTGTCTCCAAACCCAGCACTAATCATTTCTGCAATCATCTCCTGCGGATTCTGCTCCGTATTCCCTGTTTGAAATTTGGCATCTGGATTCCAAAACATTGACGGTTGAGGTGGAACCGTTTGCAGAAGAGAATTAGTTGCAGTCATCCGTTGTTGTTGTTGCTGCTGCTGGAATAGATGCGTGGCGGTGTCCTCCATATTTGTCGTTTCCTCTTTGATAGAAGTGGCTGTGAATAGGGGCAATTGTGATTGGGCGGTGGCGGTTGATGGTGTTGAAAAGTTGTTGTTCTTCATGTTTTGGCTGATGGCGACGAAACGGGAGAATGCGGGATTTTTGAATAG</canonical>
            <polymorphic>TATTTGTGATCATGTTTATTTTTTCAATTGTTTTTGAGGGATTCGGCTCATTGAGCCGTGGCTGTCCTGAGTTCCTCCATCTTTAGAGCCGCTAGTACATGATTCCTCTCAATGTTGGACCCCATGCTGCTTGCAATATTCATTAGCATTTCCTGAGGGCTTATTGGCTTGGGGATCTGTACAAGTGGCTTGATTGGTGTTAGCAGGTGTTGAACAGCAGGGATTTCAGAGTCGTCTTCTAGCTGGAACGCAAAAAAAGTTTACAAATATTTTTTAAATGATATCTTACCATTGAAGTTGTAATCGACGGTCGTTTAATTGCTGGTTGCCCAATAATATCTACAATATCCAGCGAACGTTTTCTTCCAGGAATTTCGTCTTCCAAGGATGAGAAATCAGATGACAAGCGGTTCATTTGAGCTTGTCCCTTTAAAAGTAACTGCTCTTCCTTTGCAATTTCAGCTTGTATACTTTCCACAGCTTGGATAGTGTTAACAAAYGTGTCAGCAGCGTTTAAACTGCACAGCATTTTCAATAGAACTGAAATTTTCGAATTAAAATTCAATATAAGGATTTTAAACTCACTATTAGGACATGTGGAAATTCCTTTAATCTTATCTCTCATATTATTGATTTTATTCACAATCAGATCTATAATATTGTCTCCAAACCCAGCACTAATCATTTCTGCAATCATCTCCTGCGGATTCTGCTCCGTATTCCCTGTTTGAAATTTGGCATCTGGATTCCAAAACATTGACGGTTGAGGTGGAACCGTTTGCAGAAGAGAATTAGTTGCAGTCATCCGTTGTTGTTGTTGCTGCTGCTGGAATAGATGCGTGGCGGTGTCCTCCATATTTGTCGTTTCCTCTTTGATAGAAGTGGCTGTGAATAGGGGCAATTGTGATTGGGCGGTGGCGGTTGATGGTGTTGAAAAGTTGTTGTTCTTCATGTTTTGGCTGATGGCGACGAAACGGGAGAATGCGGGATTTTTGAATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGTTTTCTTCCAGGAATTT</pcr_primer_p1>
		<pcr_primer_p2>AATTTCCACATGTCCTAATAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGTTTTCTTCCAGGAATTTCGTCTTCCAAGGATGAGAAATCAGATGACAAGCGGTTCATTTGAGCTTGTCCCTTTAAAAGTAACTGCTCTTCCTTTGCAATTTCAGCTTGTATACTTTCCACAGCTTGGATAGTGTTAACAAATGTGTCAGCAGCGTTTAAACTGCACAGCATTTTCAATAGAACTGAAATTTTCGAATTAAAATTCAATATAAGGATTTTAAACTCACTATTAGGACATGTGGAAATT</canonical_amplicon>
		<polymorphic_amplicon>ACGTTTTCTTCCAGGAATTTCGTCTTCCAAGGATGAGAAATCAGATGACAAGCGGTTCATTTGAGCTTGTCCCTTTAAAAGTAACTGCTCTTCCTTTGCAATTTCAGCTTGTATACTTTCCACAGCTTGGATAGTGTTAACAAAYGTGTCAGCAGCGTTTAAACTGCACAGCATTTTCAATAGAACTGAAATTTTCGAATTAAAATTCAATATAAGGATTTTAAACTCACTATTAGGACATGTGGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22314</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>276876</contig_pos>
        <strand>+</strand>
        <context>ATTCAATATA[A/T]GGATTTTAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGCACAGCATTTTCAATAGAACTGAAATTTTCGAATTAAAATTCAATATA</left_flank>
        <right_flank>GGATTTTAAACTCACTATTAGGACATGTGGAAATTCCTTTAATCTTATCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCCTCCATCTTTAGAGCCGCTAGTACATGATTCCTCTCAATGTTGGACCCCATGCTGCTTGCAATATTCATTAGCATTTCCTGAGGGCTTATTGGCTTGGGGATCTGTACAAGTGGCTTGATTGGTGTTAGCAGGTGTTGAACAGCAGGGATTTCAGAGTCGTCTTCTAGCTGGAACGCAAAAAAAGTTTACAAATATTTTTTAAATGATATCTTACCATTGAAGTTGTAATCGACGGTCGTTTAATTGCTGGTTGCCCAATAATATCTACAATATCCAGCGAACGTTTTCTTCCAGGAATTTCGTCTTCCAAGGATGAGAAATCAGATGACAAGCGGTTCATTTGAGCTTGTCCCTTTAAAAGTAACTGCTCTTCCTTTGCAATTTCAGCTTGTATACTTTCCACAGCTTGGATAGTGTTAACAAATGTGTCAGCAGCGTTTAAACTGCACAGCATTTTCAATAGAACTGAAATTTTCGAATTAAAATTCAATATAAGGATTTTAAACTCACTATTAGGACATGTGGAAATTCCTTTAATCTTATCTCTCATATTATTGATTTTATTCACAATCAGATCTATAATATTGTCTCCAAACCCAGCACTAATCATTTCTGCAATCATCTCCTGCGGATTCTGCTCCGTATTCCCTGTTTGAAATTTGGCATCTGGATTCCAAAACATTGACGGTTGAGGTGGAACCGTTTGCAGAAGAGAATTAGTTGCAGTCATCCGTTGTTGTTGTTGCTGCTGCTGGAATAGATGCGTGGCGGTGTCCTCCATATTTGTCGTTTCCTCTTTGATAGAAGTGGCTGTGAATAGGGGCAATTGTGATTGGGCGGTGGCGGTTGATGGTGTTGAAAAGTTGTTGTTCTTCATGTTTTGGCTGATGGCGACGAAACGGGAGAATGCGGGATTTTTGAATAGAGTTCCTGCAAAATTTTGGTCTGTTTTTTAAAGGAAAGTATTTTGATGATGAAAAACAGTACAAGAAAAG</canonical>
            <polymorphic>GTTCCTCCATCTTTAGAGCCGCTAGTACATGATTCCTCTCAATGTTGGACCCCATGCTGCTTGCAATATTCATTAGCATTTCCTGAGGGCTTATTGGCTTGGGGATCTGTACAAGTGGCTTGATTGGTGTTAGCAGGTGTTGAACAGCAGGGATTTCAGAGTCGTCTTCTAGCTGGAACGCAAAAAAAGTTTACAAATATTTTTTAAATGATATCTTACCATTGAAGTTGTAATCGACGGTCGTTTAATTGCTGGTTGCCCAATAATATCTACAATATCCAGCGAACGTTTTCTTCCAGGAATTTCGTCTTCCAAGGATGAGAAATCAGATGACAAGCGGTTCATTTGAGCTTGTCCCTTTAAAAGTAACTGCTCTTCCTTTGCAATTTCAGCTTGTATACTTTCCACAGCTTGGATAGTGTTAACAAATGTGTCAGCAGCGTTTAAACTGCACAGCATTTTCAATAGAACTGAAATTTTCGAATTAAAATTCAATATAWGGATTTTAAACTCACTATTAGGACATGTGGAAATTCCTTTAATCTTATCTCTCATATTATTGATTTTATTCACAATCAGATCTATAATATTGTCTCCAAACCCAGCACTAATCATTTCTGCAATCATCTCCTGCGGATTCTGCTCCGTATTCCCTGTTTGAAATTTGGCATCTGGATTCCAAAACATTGACGGTTGAGGTGGAACCGTTTGCAGAAGAGAATTAGTTGCAGTCATCCGTTGTTGTTGTTGCTGCTGCTGGAATAGATGCGTGGCGGTGTCCTCCATATTTGTCGTTTCCTCTTTGATAGAAGTGGCTGTGAATAGGGGCAATTGTGATTGGGCGGTGGCGGTTGATGGTGTTGAAAAGTTGTTGTTCTTCATGTTTTGGCTGATGGCGACGAAACGGGAGAATGCGGGATTTTTGAATAGAGTTCCTGCAAAATTTTGGTCTGTTTTTTAAAGGAAAGTATTTTGATGATGAAAAACAGTACAAGAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAATTTCAGCTTGTATACTTTC</pcr_primer_p1>
		<pcr_primer_p2>GAGATGATTGCAGAAATGATTAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCAATTTCAGCTTGTATACTTTCCACAGCTTGGATAGTGTTAACAAATGTGTCAGCAGCGTTTAAACTGCACAGCATTTTCAATAGAACTGAAATTTTCGAATTAAAATTCAATATAAGGATTTTAAACTCACTATTAGGACATGTGGAAATTCCTTTAATCTTATCTCTCATATTATTGATTTTATTCACAATCAGATCTATAATATTGTCTCCAAACCCAGCACTAATCATTTCTGCAATCATCTC</canonical_amplicon>
		<polymorphic_amplicon>GCAATTTCAGCTTGTATACTTTCCACAGCTTGGATAGTGTTAACAAATGTGTCAGCAGCGTTTAAACTGCACAGCATTTTCAATAGAACTGAAATTTTCGAATTAAAATTCAATATAWGGATTTTAAACTCACTATTAGGACATGTGGAAATTCCTTTAATCTTATCTCTCATATTATTGATTTTATTCACAATCAGATCTATAATATTGTCTCCAAACCCAGCACTAATCATTTCTGCAATCATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22315</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>117749</contig_pos>
        <strand>+</strand>
        <context>GTCGAAAATA[A/G]TCTACTTACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAGATTTGAAGGCTCACTGAAATCATTTTCACTAAACCTGTCGAAAATA</left_flank>
        <right_flank>TCTACTTACAATAGTGGTACAGTCTCGGTTTTCATTGCGGATCCAAATAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAGCTCATGTCATAAAAAATGAAGATCAAATAAATAATTTTCAATTTGATACTTTTTTTTTAATTATCAGAAATCAATGAAGATATAAGTTCTGCGACTCCAGAAAGTATTCTAAAGTTGTTCAAAATCTTTAAAATGAGAGCTGTGAAATTTGGAGCACATTTTCCAGAGTCGCTCATGGAGTAGATGCGACTCGGCATTGCCGTTGTCCCGTGGAAATTAATTTCTTTTTACTTTCACATGAGCAATCGGATTCCGTTTTTGTCTTATCCCATTGCTGAAAAAATTGAGTATCTCAATAAAGTTGTCCGAATTGAATTCGAATATTCTGTTTCTCAATTTCGAAAATACTCACCCCATACATAGCTTCCTCACAATGTTTCAATCTCTGTTGTGCTGACGACGAAACGTATTCTGCGGATTTCGCTACCGGGAGCAAATGAGATGGTAGATTTGAAGGCTCACTGAAATCATTTTCACTAAACCTGTCGAAAATAGTCTACTTACAATAGTGGTACAGTCTCGGTTTTCATTGCGGATCCAAATAATATTTTGGGCTTCTGGGGAACTAGAAATGACTGATAAATCAAATTTGAAGTTCTTCATAGTATCTACCTGAAATTCCTGCTCCATATATGGGTTCATTGAGGAATCGCAAGCAAATTTTTTTCTTAGCTAAACGCATCTCATCGAATTGATCGAACAAGGCTTCACGATAATTCTCATAAGACATTCCAGCCGGTCGTACAGTGATCCTAAAAATTGTGATTCGATTTTTAAAATTTATTGATTTTTTTCTTACAATTTCTTCTCCGTCTCATAACAATTTTTCAAAGCCGAGTTTTGAGTTGAAACTGGTCCAGATTGGGATTGTGAAATCTGAAAAGAAGTATGAAAAATGAGGGTTCCTTTGCCAATAACACAATATTTGATTTTTTTTAGTTTTGCACCAACTCACCTGATCCGTTGCCGGCTGGTGTTTTTCTGGATTGGAAAAT</canonical>
            <polymorphic>TCAAGCTCATGTCATAAAAAATGAAGATCAAATAAATAATTTTCAATTTGATACTTTTTTTTTAATTATCAGAAATCAATGAAGATATAAGTTCTGCGACTCCAGAAAGTATTCTAAAGTTGTTCAAAATCTTTAAAATGAGAGCTGTGAAATTTGGAGCACATTTTCCAGAGTCGCTCATGGAGTAGATGCGACTCGGCATTGCCGTTGTCCCGTGGAAATTAATTTCTTTTTACTTTCACATGAGCAATCGGATTCCGTTTTTGTCTTATCCCATTGCTGAAAAAATTGAGTATCTCAATAAAGTTGTCCGAATTGAATTCGAATATTCTGTTTCTCAATTTCGAAAATACTCACCCCATACATAGCTTCCTCACAATGTTTCAATCTCTGTTGTGCTGACGACGAAACGTATTCTGCGGATTTCGCTACCGGGAGCAAATGAGATGGTAGATTTGAAGGCTCACTGAAATCATTTTCACTAAACCTGTCGAAAATARTCTACTTACAATAGTGGTACAGTCTCGGTTTTCATTGCGGATCCAAATAATATTTTGGGCTTCTGGGGAACTAGAAATGACTGATAAATCAAATTTGAAGTTCTTCATAGTATCTACCTGAAATTCCTGCTCCATATATGGGTTCATTGAGGAATCGCAAGCAAATTTTTTTCTTAGCTAAACGCATCTCATCGAATTGATCGAACAAGGCTTCACGATAATTCTCATAAGACATTCCAGCCGGTCGTACAGTGATCCTAAAAATTGTGATTCGATTTTTAAAATTTATTGATTTTTTTCTTACAATTTCTTCTCCGTCTCATAACAATTTTTCAAAGCCGAGTTTTGAGTTGAAACTGGTCCAGATTGGGATTGTGAAATCTGAAAAGAAGTATGAAAAATGAGGGTTCCTTTGCCAATAACACAATATTTGATTTTTTTTAGTTTTGCACCAACTCACCTGATCCGTTGCCGGCTGGTGTTTTTCTGGATTGGAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATGAGATGGTAGATTTGAAG</pcr_primer_p1>
		<pcr_primer_p2>GAGATGCGTTTAGCTAAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAAATGAGATGGTAGATTTGAAGGCTCACTGAAATCATTTTCACTAAACCTGTCGAAAATAGTCTACTTACAATAGTGGTACAGTCTCGGTTTTCATTGCGGATCCAAATAATATTTTGGGCTTCTGGGGAACTAGAAATGACTGATAAATCAAATTTGAAGTTCTTCATAGTATCTACCTGAAATTCCTGCTCCATATATGGGTTCATTGAGGAATCGCAAGCAAATTTTTTTCTTAGCTAAACGCATCTC</canonical_amplicon>
		<polymorphic_amplicon>CAAATGAGATGGTAGATTTGAAGGCTCACTGAAATCATTTTCACTAAACCTGTCGAAAATARTCTACTTACAATAGTGGTACAGTCTCGGTTTTCATTGCGGATCCAAATAATATTTTGGGCTTCTGGGGAACTAGAAATGACTGATAAATCAAATTTGAAGTTCTTCATAGTATCTACCTGAAATTCCTGCTCCATATATGGGTTCATTGAGGAATCGCAAGCAAATTTTTTTCTTAGCTAAACGCATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22316</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>117849</contig_pos>
        <strand>+</strand>
        <context>CAAATTTGAA[A/G]TTCTTCATAS</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATTTTGGGCTTCTGGGGAACTAGAAATGACTGATAAATCAAATTTGAA</left_flank>
        <right_flank>TTCTTCATAGTATCTACCTGAAATTCCTGCTCCATATATGGGTTCATTGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAGAAAGTATTCTAAAGTTGTTCAAAATCTTTAAAATGAGAGCTGTGAAATTTGGAGCACATTTTCCAGAGTCGCTCATGGAGTAGATGCGACTCGGCATTGCCGTTGTCCCGTGGAAATTAATTTCTTTTTACTTTCACATGAGCAATCGGATTCCGTTTTTGTCTTATCCCATTGCTGAAAAAATTGAGTATCTCAATAAAGTTGTCCGAATTGAATTCGAATATTCTGTTTCTCAATTTCGAAAATACTCACCCCATACATAGCTTCCTCACAATGTTTCAATCTCTGTTGTGCTGACGACGAAACGTATTCTGCGGATTTCGCTACCGGGAGCAAATGAGATGGTAGATTTGAAGGCTCACTGAAATCATTTTCACTAAACCTGTCGAAAATAGTCTACTTACAATAGTGGTACAGTCTCGGTTTTCATTGCGGATCCAAATAATATTTTGGGCTTCTGGGGAACTAGAAATGACTGATAAATCAAATTTGAAGTTCTTCATAGTATCTACCTGAAATTCCTGCTCCATATATGGGTTCATTGAGGAATCGCAAGCAAATTTTTTTCTTAGCTAAACGCATCTCATCGAATTGATCGAACAAGGCTTCACGATAATTCTCATAAGACATTCCAGCCGGTCGTACAGTGATCCTAAAAATTGTGATTCGATTTTTAAAATTTATTGATTTTTTTCTTACAATTTCTTCTCCGTCTCATAACAATTTTTCAAAGCCGAGTTTTGAGTTGAAACTGGTCCAGATTGGGATTGTGAAATCTGAAAAGAAGTATGAAAAATGAGGGTTCCTTTGCCAATAACACAATATTTGATTTTTTTTAGTTTTGCACCAACTCACCTGATCCGTTGCCGGCTGGTGTTTTTCTGGATTGGAAAATGGTTTCTTTTGAACAATATTATCTTGTAAACTTCGTCGGTCCATTGTCTGCTCCATCTTATCATTTGGAAGTATACCAATATTTCCGGAAGACACTCCGA</canonical>
            <polymorphic>TCCAGAAAGTATTCTAAAGTTGTTCAAAATCTTTAAAATGAGAGCTGTGAAATTTGGAGCACATTTTCCAGAGTCGCTCATGGAGTAGATGCGACTCGGCATTGCCGTTGTCCCGTGGAAATTAATTTCTTTTTACTTTCACATGAGCAATCGGATTCCGTTTTTGTCTTATCCCATTGCTGAAAAAATTGAGTATCTCAATAAAGTTGTCCGAATTGAATTCGAATATTCTGTTTCTCAATTTCGAAAATACTCACCCCATACATAGCTTCCTCACAATGTTTCAATCTCTGTTGTGCTGACGACGAAACGTATTCTGCGGATTTCGCTACCGGGAGCAAATGAGATGGTAGATTTGAAGGCTCACTGAAATCATTTTCACTAAACCTGTCGAAAATAGTCTACTTACAATAGTGGTACAGTCTCGGTTTTCATTGCGGATCCAAATAATATTTTGGGCTTCTGGGGAACTAGAAATGACTGATAAATCAAATTTGAARTTCTTCATAGTATCTACCTGAAATTCCTGCTCCATATATGGGTTCATTGAGGAATCGCAAGCAAATTTTTTTCTTAGCTAAACGCATCTCATCGAATTGATCGAACAAGGCTTCACGATAATTCTCATAAGACATTCCAGCCGGTCGTACAGTGATCCTAAAAATTGTGATTCGATTTTTAAAATTTATTGATTTTTTTCTTACAATTTCTTCTCCGTCTCATAACAATTTTTCAAAGCCGAGTTTTGAGTTGAAACTGGTCCAGATTGGGATTGTGAAATCTGAAAAGAAGTATGAAAAATGAGGGTTCCTTTGCCAATAACACAATATTTGATTTTTTTTAGTTTTGCACCAACTCACCTGATCCGTTGCCGGCTGGTGTTTTTCTGGATTGGAAAATGGTTTCTTTTGAACAATATTATCTTGTAAACTTCGTCGGTCCATTGTCTGCTCCATCTTATCATTTGGAAGTATACCAATATTTCCGGAAGACACTCCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAATGAGATGGTAGATTTGAAG</pcr_primer_p1>
		<pcr_primer_p2>GAGATGCGTTTAGCTAAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAAATGAGATGGTAGATTTGAAGGCTCACTGAAATCATTTTCACTAAACCTGTCGAAAATAGTCTACTTACAATAGTGGTACAGTCTCGGTTTTCATTGCGGATCCAAATAATATTTTGGGCTTCTGGGGAACTAGAAATGACTGATAAATCAAATTTGAAGTTCTTCATAGTATCTACCTGAAATTCCTGCTCCATATATGGGTTCATTGAGGAATCGCAAGCAAATTTTTTTCTTAGCTAAACGCATCTC</canonical_amplicon>
		<polymorphic_amplicon>CAAATGAGATGGTAGATTTGAAGGCTCACTGAAATCATTTTCACTAAACCTGTCGAAAATAGTCTACTTACAATAGTGGTACAGTCTCGGTTTTCATTGCGGATCCAAATAATATTTTGGGCTTCTGGGGAACTAGAAATGACTGATAAATCAAATTTGAARTTCTTCATAGTATCTACCTGAAATTCCTGCTCCATATATGGGTTCATTGAGGAATCGCAAGCAAATTTTTTTCTTAGCTAAACGCATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22317</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>118331</contig_pos>
        <strand>+</strand>
        <context>TATACCAATA[C/T]TTCCGGAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCGTCGGTCCATTGTCTGCTCCATCTTATCATTTGGAAGTATACCAATA</left_flank>
        <right_flank>TTCCGGAAGACACTCCGACGGGATTGCTAACTTGATATGATACACGAATA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATAAATCAAATTTGAAGTTCTTCATAGTATCTACCTGAAATTCCTGCTCCATATATGGGTTCATTGAGGAATCGCAAGCAAATTTTTTTCTTAGCTAAACGCATCTCATCGAATTGATCGAACAAGGCTTCACGATAATTCTCATAAGACATTCCAGCCGGTCGTACAGTGATCCTAAAAATTGTGATTCGATTTTTAAAATTTATTGATTTTTTTCTTACAATTTCTTCTCCGTCTCATAACAATTTTTCAAAGCCGAGTTTTGAGTTGAAACTGGTCCAGATTGGGATTGTGAAATCTGAAAAGAAGTATGAAAAATGAGGGTTCCTTTGCCAATAACACAATATTTGATTTTTTTTAGTTTTGCACCAACTCACCTGATCCGTTGCCGGCTGGTGTTTTTCTGGATTGGAAAATGGTTTCTTTTGAACAATATTATCTTGTAAACTTCGTCGGTCCATTGTCTGCTCCATCTTATCATTTGGAAGTATACCAATATTTCCGGAAGACACTCCGACGGGATTGCTAACTTGATATGATACACGAATATCTTGTGCACCGGGTAGGCCCAATTCGAGTAAACTTGGAACATGCGACAATGAGATACTTGATGATTGGCGATAAATTGGATCCATTGCTCTCTCTATAACTCCTGGAGAGGGAAGGTAGATCGAACCTAGTAATCCTGGAATCCTGACTTGTTGAGTACCCAATGATCCATGATGAGCTTGATTGTTCTGAAAATGTATTTTTAACAGCATTTGTCTTCTTGTTTTTTGTCTAAACTAGACTCTACCCGCCCCATCAAAAATTAAACATCTCAATTTTGAATAACAAAAAATCAGAATTTAGATTTGAACAACGCTATTCTGATCAACAATCTCCAGAGTGTCAATTTTTGTTTGGGTACAGTTAATTGGGCTTTAGTGCATTTCACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTTCAGATTTTCATGGGC</canonical>
            <polymorphic>GATAAATCAAATTTGAAGTTCTTCATAGTATCTACCTGAAATTCCTGCTCCATATATGGGTTCATTGAGGAATCGCAAGCAAATTTTTTTCTTAGCTAAACGCATCTCATCGAATTGATCGAACAAGGCTTCACGATAATTCTCATAAGACATTCCAGCCGGTCGTACAGTGATCCTAAAAATTGTGATTCGATTTTTAAAATTTATTGATTTTTTTCTTACAATTTCTTCTCCGTCTCATAACAATTTTTCAAAGCCGAGTTTTGAGTTGAAACTGGTCCAGATTGGGATTGTGAAATCTGAAAAGAAGTATGAAAAATGAGGGTTCCTTTGCCAATAACACAATATTTGATTTTTTTTAGTTTTGCACCAACTCACCTGATCCGTTGCCGGCTGGTGTTTTTCTGGATTGGAAAATGGTTTCTTTTGAACAATATTATCTTGTAAACTTCGTCGGTCCATTGTCTGCTCCATCTTATCATTTGGAAGTATACCAATAYTTCCGGAAGACACTCCGACGGGATTGCTAACTTGATATGATACACGAATATCTTGTGCACCGGGTAGGCCCAATTCGAGTAAACTTGGAACATGCGACAATGAGATACTTGATGATTGGCGATAAATTGGATCCATTGCTCTCTCTATAACTCCTGGAGAGGGAAGGTAGATCGAACCTAGTAATCCTGGAATCCTGACTTGTTGAGTACCCAATGATCCATGATGAGCTTGATTGTTCTGAAAATGTATTTTTAACAGCATTTGTCTTCTTGTTTTTTGTCTAAACTAGACTCTACCCGCCCCATCAAAAATTAAACATCTCAATTTTGAATAACAAAAAATCAGAATTTAGATTTGAACAACGCTATTCTGATCAACAATCTCCAGAGTGTCAATTTTTGTTTGGGTACAGTTAATTGGGCTTTAGTGCATTTCACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTTCAGATTTTCATGGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>482 346 89 63 20</canonical_bands>
                <polymorphic_bands>545 346 89 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTGGAAAATGGTTTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAGGAGTTATAGAGAGAGCAATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATTGGAAAATGGTTTCTTTTGAACAATATTATCTTGTAAACTTCGTCGGTCCATTGTCTGCTCCATCTTATCATTTGGAAGTATACCAATATTTCCGGAAGACACTCCGACGGGATTGCTAACTTGATATGATACACGAATATCTTGTGCACCGGGTAGGCCCAATTCGAGTAAACTTGGAACATGCGACAATGAGATACTTGATGATTGGCGATAAATTGGATCCATTGCTCTCTCTATAACTCCTG</canonical_amplicon>
		<polymorphic_amplicon>GATTGGAAAATGGTTTCTTTTGAACAATATTATCTTGTAAACTTCGTCGGTCCATTGTCTGCTCCATCTTATCATTTGGAAGTATACCAATAYTTCCGGAAGACACTCCGACGGGATTGCTAACTTGATATGATACACGAATATCTTGTGCACCGGGTAGGCCCAATTCGAGTAAACTTGGAACATGCGACAATGAGATACTTGATGATTGGCGATAAATTGGATCCATTGCTCTCTCTATAACTCCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22318</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>118351</contig_pos>
        <strand>+</strand>
        <context>ACACTCCGAC[C/G]GGATTGCTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCCATCTTATCATTTGGAAGTATACCAATATTTCCGGAAGACACTCCGAC</left_flank>
        <right_flank>GGATTGCTAACTTGATATGATACACGAATATCTTGTGCACCGGGTAGGCC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCATAGTATCTACCTGAAATTCCTGCTCCATATATGGGTTCATTGAGGAATCGCAAGCAAATTTTTTTCTTAGCTAAACGCATCTCATCGAATTGATCGAACAAGGCTTCACGATAATTCTCATAAGACATTCCAGCCGGTCGTACAGTGATCCTAAAAATTGTGATTCGATTTTTAAAATTTATTGATTTTTTTCTTACAATTTCTTCTCCGTCTCATAACAATTTTTCAAAGCCGAGTTTTGAGTTGAAACTGGTCCAGATTGGGATTGTGAAATCTGAAAAGAAGTATGAAAAATGAGGGTTCCTTTGCCAATAACACAATATTTGATTTTTTTTAGTTTTGCACCAACTCACCTGATCCGTTGCCGGCTGGTGTTTTTCTGGATTGGAAAATGGTTTCTTTTGAACAATATTATCTTGTAAACTTCGTCGGTCCATTGTCTGCTCCATCTTATCATTTGGAAGTATACCAATATTTCCGGAAGACACTCCGACGGGATTGCTAACTTGATATGATACACGAATATCTTGTGCACCGGGTAGGCCCAATTCGAGTAAACTTGGAACATGCGACAATGAGATACTTGATGATTGGCGATAAATTGGATCCATTGCTCTCTCTATAACTCCTGGAGAGGGAAGGTAGATCGAACCTAGTAATCCTGGAATCCTGACTTGTTGAGTACCCAATGATCCATGATGAGCTTGATTGTTCTGAAAATGTATTTTTAACAGCATTTGTCTTCTTGTTTTTTGTCTAAACTAGACTCTACCCGCCCCATCAAAAATTAAACATCTCAATTTTGAATAACAAAAAATCAGAATTTAGATTTGAACAACGCTATTCTGATCAACAATCTCCAGAGTGTCAATTTTTGTTTGGGTACAGTTAATTGGGCTTTAGTGCATTTCACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTTCAGATTTTCATGGGCAGTGGCGTCCCTTTTCTTTC</canonical>
            <polymorphic>CTTCATAGTATCTACCTGAAATTCCTGCTCCATATATGGGTTCATTGAGGAATCGCAAGCAAATTTTTTTCTTAGCTAAACGCATCTCATCGAATTGATCGAACAAGGCTTCACGATAATTCTCATAAGACATTCCAGCCGGTCGTACAGTGATCCTAAAAATTGTGATTCGATTTTTAAAATTTATTGATTTTTTTCTTACAATTTCTTCTCCGTCTCATAACAATTTTTCAAAGCCGAGTTTTGAGTTGAAACTGGTCCAGATTGGGATTGTGAAATCTGAAAAGAAGTATGAAAAATGAGGGTTCCTTTGCCAATAACACAATATTTGATTTTTTTTAGTTTTGCACCAACTCACCTGATCCGTTGCCGGCTGGTGTTTTTCTGGATTGGAAAATGGTTTCTTTTGAACAATATTATCTTGTAAACTTCGTCGGTCCATTGTCTGCTCCATCTTATCATTTGGAAGTATACCAATATTTCCGGAAGACACTCCGACSGGATTGCTAACTTGATATGATACACGAATATCTTGTGCACCGGGTAGGCCCAATTCGAGTAAACTTGGAACATGCGACAATGAGATACTTGATGATTGGCGATAAATTGGATCCATTGCTCTCTCTATAACTCCTGGAGAGGGAAGGTAGATCGAACCTAGTAATCCTGGAATCCTGACTTGTTGAGTACCCAATGATCCATGATGAGCTTGATTGTTCTGAAAATGTATTTTTAACAGCATTTGTCTTCTTGTTTTTTGTCTAAACTAGACTCTACCCGCCCCATCAAAAATTAAACATCTCAATTTTGAATAACAAAAAATCAGAATTTAGATTTGAACAACGCTATTCTGATCAACAATCTCCAGAGTGTCAATTTTTGTTTGGGTACAGTTAATTGGGCTTTAGTGCATTTCACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTTCAGATTTTCATGGGCAGTGGCGTCCCTTTTCTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>500 436 64</canonical_bands>
                <polymorphic_bands>564 436</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGTCTGCTCCATCTTATCAT</pcr_primer_p1>
		<pcr_primer_p2>GGTACTCAACAAGTCAGGATTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTGTCTGCTCCATCTTATCATTTGGAAGTATACCAATATTTCCGGAAGACACTCCGACGGGATTGCTAACTTGATATGATACACGAATATCTTGTGCACCGGGTAGGCCCAATTCGAGTAAACTTGGAACATGCGACAATGAGATACTTGATGATTGGCGATAAATTGGATCCATTGCTCTCTCTATAACTCCTGGAGAGGGAAGGTAGATCGAACCTAGTAATCCTGGAATCCTGACTTGTTGAGTACC</canonical_amplicon>
		<polymorphic_amplicon>ATTGTCTGCTCCATCTTATCATTTGGAAGTATACCAATATTTCCGGAAGACACTCCGACSGGATTGCTAACTTGATATGATACACGAATATCTTGTGCACCGGGTAGGCCCAATTCGAGTAAACTTGGAACATGCGACAATGAGATACTTGATGATTGGCGATAAATTGGATCCATTGCTCTCTCTATAACTCCTGGAGAGGGAAGGTAGATCGAACCTAGTAATCCTGGAATCCTGACTTGTTGAGTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22319</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>118378</contig_pos>
        <strand>+</strand>
        <context>ATGATACACG[A/C]ATATCTTGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATATTTCCGGAAGACACTCCGACGGGATTGCTAACTTGATATGATACACG</left_flank>
        <right_flank>ATATCTTGTGCACCGGGTAGGCCCAATTCGAGTAAACTTGGAACATGCGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCATATATGGGTTCATTGAGGAATCGCAAGCAAATTTTTTTCTTAGCTAAACGCATCTCATCGAATTGATCGAACAAGGCTTCACGATAATTCTCATAAGACATTCCAGCCGGTCGTACAGTGATCCTAAAAATTGTGATTCGATTTTTAAAATTTATTGATTTTTTTCTTACAATTTCTTCTCCGTCTCATAACAATTTTTCAAAGCCGAGTTTTGAGTTGAAACTGGTCCAGATTGGGATTGTGAAATCTGAAAAGAAGTATGAAAAATGAGGGTTCCTTTGCCAATAACACAATATTTGATTTTTTTTAGTTTTGCACCAACTCACCTGATCCGTTGCCGGCTGGTGTTTTTCTGGATTGGAAAATGGTTTCTTTTGAACAATATTATCTTGTAAACTTCGTCGGTCCATTGTCTGCTCCATCTTATCATTTGGAAGTATACCAATATTTCCGGAAGACACTCCGACGGGATTGCTAACTTGATATGATACACGAATATCTTGTGCACCGGGTAGGCCCAATTCGAGTAAACTTGGAACATGCGACAATGAGATACTTGATGATTGGCGATAAATTGGATCCATTGCTCTCTCTATAACTCCTGGAGAGGGAAGGTAGATCGAACCTAGTAATCCTGGAATCCTGACTTGTTGAGTACCCAATGATCCATGATGAGCTTGATTGTTCTGAAAATGTATTTTTAACAGCATTTGTCTTCTTGTTTTTTGTCTAAACTAGACTCTACCCGCCCCATCAAAAATTAAACATCTCAATTTTGAATAACAAAAAATCAGAATTTAGATTTGAACAACGCTATTCTGATCAACAATCTCCAGAGTGTCAATTTTTGTTTGGGTACAGTTAATTGGGCTTTAGTGCATTTCACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTTCAGATTTTCATGGGCAGTGGCGTCCCTTTTCTTTCTTTTGGAATTTTTCTACGCCCATACAT</canonical>
            <polymorphic>CTCCATATATGGGTTCATTGAGGAATCGCAAGCAAATTTTTTTCTTAGCTAAACGCATCTCATCGAATTGATCGAACAAGGCTTCACGATAATTCTCATAAGACATTCCAGCCGGTCGTACAGTGATCCTAAAAATTGTGATTCGATTTTTAAAATTTATTGATTTTTTTCTTACAATTTCTTCTCCGTCTCATAACAATTTTTCAAAGCCGAGTTTTGAGTTGAAACTGGTCCAGATTGGGATTGTGAAATCTGAAAAGAAGTATGAAAAATGAGGGTTCCTTTGCCAATAACACAATATTTGATTTTTTTTAGTTTTGCACCAACTCACCTGATCCGTTGCCGGCTGGTGTTTTTCTGGATTGGAAAATGGTTTCTTTTGAACAATATTATCTTGTAAACTTCGTCGGTCCATTGTCTGCTCCATCTTATCATTTGGAAGTATACCAATATTTCCGGAAGACACTCCGACGGGATTGCTAACTTGATATGATACACGMATATCTTGTGCACCGGGTAGGCCCAATTCGAGTAAACTTGGAACATGCGACAATGAGATACTTGATGATTGGCGATAAATTGGATCCATTGCTCTCTCTATAACTCCTGGAGAGGGAAGGTAGATCGAACCTAGTAATCCTGGAATCCTGACTTGTTGAGTACCCAATGATCCATGATGAGCTTGATTGTTCTGAAAATGTATTTTTAACAGCATTTGTCTTCTTGTTTTTTGTCTAAACTAGACTCTACCCGCCCCATCAAAAATTAAACATCTCAATTTTGAATAACAAAAAATCAGAATTTAGATTTGAACAACGCTATTCTGATCAACAATCTCCAGAGTGTCAATTTTTGTTTGGGTACAGTTAATTGGGCTTTAGTGCATTTCACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTTCAGATTTTCATGGGCAGTGGCGTCCCTTTTCTTTCTTTTGGAATTTTTCTACGCCCATACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCATCTTATCATTTGGAAGTA</pcr_primer_p1>
		<pcr_primer_p2>ATCATTGGGTACTCAACAAGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCCATCTTATCATTTGGAAGTATACCAATATTTCCGGAAGACACTCCGACGGGATTGCTAACTTGATATGATACACGAATATCTTGTGCACCGGGTAGGCCCAATTCGAGTAAACTTGGAACATGCGACAATGAGATACTTGATGATTGGCGATAAATTGGATCCATTGCTCTCTCTATAACTCCTGGAGAGGGAAGGTAGATCGAACCTAGTAATCCTGGAATCCTGACTTGTTGAGTACCCAATGAT</canonical_amplicon>
		<polymorphic_amplicon>CTCCATCTTATCATTTGGAAGTATACCAATATTTCCGGAAGACACTCCGACGGGATTGCTAACTTGATATGATACACGMATATCTTGTGCACCGGGTAGGCCCAATTCGAGTAAACTTGGAACATGCGACAATGAGATACTTGATGATTGGCGATAAATTGGATCCATTGCTCTCTCTATAACTCCTGGAGAGGGAAGGTAGATCGAACCTAGTAATCCTGGAATCCTGACTTGTTGAGTACCCAATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22320</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>118413</contig_pos>
        <strand>+</strand>
        <context>AATTCGAGTA[A/G]ACTTGGAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGATATGATACACGAATATCTTGTGCACCGGGTAGGCCCAATTCGAGTA</left_flank>
        <right_flank>ACTTGGAACATGCGACAATGAGATACTTGATGATTGGCGATAAATTGGAT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTTCTTAGCTAAACGCATCTCATCGAATTGATCGAACAAGGCTTCACGATAATTCTCATAAGACATTCCAGCCGGTCGTACAGTGATCCTAAAAATTGTGATTCGATTTTTAAAATTTATTGATTTTTTTCTTACAATTTCTTCTCCGTCTCATAACAATTTTTCAAAGCCGAGTTTTGAGTTGAAACTGGTCCAGATTGGGATTGTGAAATCTGAAAAGAAGTATGAAAAATGAGGGTTCCTTTGCCAATAACACAATATTTGATTTTTTTTAGTTTTGCACCAACTCACCTGATCCGTTGCCGGCTGGTGTTTTTCTGGATTGGAAAATGGTTTCTTTTGAACAATATTATCTTGTAAACTTCGTCGGTCCATTGTCTGCTCCATCTTATCATTTGGAAGTATACCAATATTTCCGGAAGACACTCCGACGGGATTGCTAACTTGATATGATACACGAATATCTTGTGCACCGGGTAGGCCCAATTCGAGTAAACTTGGAACATGCGACAATGAGATACTTGATGATTGGCGATAAATTGGATCCATTGCTCTCTCTATAACTCCTGGAGAGGGAAGGTAGATCGAACCTAGTAATCCTGGAATCCTGACTTGTTGAGTACCCAATGATCCATGATGAGCTTGATTGTTCTGAAAATGTATTTTTAACAGCATTTGTCTTCTTGTTTTTTGTCTAAACTAGACTCTACCCGCCCCATCAAAAATTAAACATCTCAATTTTGAATAACAAAAAATCAGAATTTAGATTTGAACAACGCTATTCTGATCAACAATCTCCAGAGTGTCAATTTTTGTTTGGGTACAGTTAATTGGGCTTTAGTGCATTTCACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTTCAGATTTTCATGGGCAGTGGCGTCCCTTTTCTTTCTTTTGGAATTTTTCTACGCCCATACATACTTTTCAGGATCAAAACTTCGAAACAAAAAAATA</canonical>
            <polymorphic>ATTTTTTTCTTAGCTAAACGCATCTCATCGAATTGATCGAACAAGGCTTCACGATAATTCTCATAAGACATTCCAGCCGGTCGTACAGTGATCCTAAAAATTGTGATTCGATTTTTAAAATTTATTGATTTTTTTCTTACAATTTCTTCTCCGTCTCATAACAATTTTTCAAAGCCGAGTTTTGAGTTGAAACTGGTCCAGATTGGGATTGTGAAATCTGAAAAGAAGTATGAAAAATGAGGGTTCCTTTGCCAATAACACAATATTTGATTTTTTTTAGTTTTGCACCAACTCACCTGATCCGTTGCCGGCTGGTGTTTTTCTGGATTGGAAAATGGTTTCTTTTGAACAATATTATCTTGTAAACTTCGTCGGTCCATTGTCTGCTCCATCTTATCATTTGGAAGTATACCAATATTTCCGGAAGACACTCCGACGGGATTGCTAACTTGATATGATACACGAATATCTTGTGCACCGGGTAGGCCCAATTCGAGTARACTTGGAACATGCGACAATGAGATACTTGATGATTGGCGATAAATTGGATCCATTGCTCTCTCTATAACTCCTGGAGAGGGAAGGTAGATCGAACCTAGTAATCCTGGAATCCTGACTTGTTGAGTACCCAATGATCCATGATGAGCTTGATTGTTCTGAAAATGTATTTTTAACAGCATTTGTCTTCTTGTTTTTTGTCTAAACTAGACTCTACCCGCCCCATCAAAAATTAAACATCTCAATTTTGAATAACAAAAAATCAGAATTTAGATTTGAACAACGCTATTCTGATCAACAATCTCCAGAGTGTCAATTTTTGTTTGGGTACAGTTAATTGGGCTTTAGTGCATTTCACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTTCAGATTTTCATGGGCAGTGGCGTCCCTTTTCTTTCTTTTGGAATTTTTCTACGCCCATACATACTTTTCAGGATCAAAACTTCGAAACAAAAAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCATCTTATCATTTGGAAGTA</pcr_primer_p1>
		<pcr_primer_p2>ATCATTGGGTACTCAACAAGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCCATCTTATCATTTGGAAGTATACCAATATTTCCGGAAGACACTCCGACGGGATTGCTAACTTGATATGATACACGAATATCTTGTGCACCGGGTAGGCCCAATTCGAGTAAACTTGGAACATGCGACAATGAGATACTTGATGATTGGCGATAAATTGGATCCATTGCTCTCTCTATAACTCCTGGAGAGGGAAGGTAGATCGAACCTAGTAATCCTGGAATCCTGACTTGTTGAGTACCCAATGAT</canonical_amplicon>
		<polymorphic_amplicon>CTCCATCTTATCATTTGGAAGTATACCAATATTTCCGGAAGACACTCCGACGGGATTGCTAACTTGATATGATACACGAATATCTTGTGCACCGGGTAGGCCCAATTCGAGTARACTTGGAACATGCGACAATGAGATACTTGATGATTGGCGATAAATTGGATCCATTGCTCTCTCTATAACTCCTGGAGAGGGAAGGTAGATCGAACCTAGTAATCCTGGAATCCTGACTTGTTGAGTACCCAATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22321</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>118434</contig_pos>
        <strand>+</strand>
        <context>TGCGACAATG[A/T]GATACTTGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGTGCACCGGGTAGGCCCAATTCGAGTAAACTTGGAACATGCGACAATG</left_flank>
        <right_flank>GATACTTGATGATTGGCGATAAATTGGATCCATTGCTCTCTCTATAACTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTCATCGAATTGATCGAACAAGGCTTCACGATAATTCTCATAAGACATTCCAGCCGGTCGTACAGTGATCCTAAAAATTGTGATTCGATTTTTAAAATTTATTGATTTTTTTCTTACAATTTCTTCTCCGTCTCATAACAATTTTTCAAAGCCGAGTTTTGAGTTGAAACTGGTCCAGATTGGGATTGTGAAATCTGAAAAGAAGTATGAAAAATGAGGGTTCCTTTGCCAATAACACAATATTTGATTTTTTTTAGTTTTGCACCAACTCACCTGATCCGTTGCCGGCTGGTGTTTTTCTGGATTGGAAAATGGTTTCTTTTGAACAATATTATCTTGTAAACTTCGTCGGTCCATTGTCTGCTCCATCTTATCATTTGGAAGTATACCAATATTTCCGGAAGACACTCCGACGGGATTGCTAACTTGATATGATACACGAATATCTTGTGCACCGGGTAGGCCCAATTCGAGTAAACTTGGAACATGCGACAATGAGATACTTGATGATTGGCGATAAATTGGATCCATTGCTCTCTCTATAACTCCTGGAGAGGGAAGGTAGATCGAACCTAGTAATCCTGGAATCCTGACTTGTTGAGTACCCAATGATCCATGATGAGCTTGATTGTTCTGAAAATGTATTTTTAACAGCATTTGTCTTCTTGTTTTTTGTCTAAACTAGACTCTACCCGCCCCATCAAAAATTAAACATCTCAATTTTGAATAACAAAAAATCAGAATTTAGATTTGAACAACGCTATTCTGATCAACAATCTCCAGAGTGTCAATTTTTGTTTGGGTACAGTTAATTGGGCTTTAGTGCATTTCACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTTCAGATTTTCATGGGCAGTGGCGTCCCTTTTCTTTCTTTTGGAATTTTTCTACGCCCATACATACTTTTCAGGATCAAAACTTCGAAACAAAAAAATAAACTCACAAATAAGGAAGAAG</canonical>
            <polymorphic>ATCTCATCGAATTGATCGAACAAGGCTTCACGATAATTCTCATAAGACATTCCAGCCGGTCGTACAGTGATCCTAAAAATTGTGATTCGATTTTTAAAATTTATTGATTTTTTTCTTACAATTTCTTCTCCGTCTCATAACAATTTTTCAAAGCCGAGTTTTGAGTTGAAACTGGTCCAGATTGGGATTGTGAAATCTGAAAAGAAGTATGAAAAATGAGGGTTCCTTTGCCAATAACACAATATTTGATTTTTTTTAGTTTTGCACCAACTCACCTGATCCGTTGCCGGCTGGTGTTTTTCTGGATTGGAAAATGGTTTCTTTTGAACAATATTATCTTGTAAACTTCGTCGGTCCATTGTCTGCTCCATCTTATCATTTGGAAGTATACCAATATTTCCGGAAGACACTCCGACGGGATTGCTAACTTGATATGATACACGAATATCTTGTGCACCGGGTAGGCCCAATTCGAGTAAACTTGGAACATGCGACAATGWGATACTTGATGATTGGCGATAAATTGGATCCATTGCTCTCTCTATAACTCCTGGAGAGGGAAGGTAGATCGAACCTAGTAATCCTGGAATCCTGACTTGTTGAGTACCCAATGATCCATGATGAGCTTGATTGTTCTGAAAATGTATTTTTAACAGCATTTGTCTTCTTGTTTTTTGTCTAAACTAGACTCTACCCGCCCCATCAAAAATTAAACATCTCAATTTTGAATAACAAAAAATCAGAATTTAGATTTGAACAACGCTATTCTGATCAACAATCTCCAGAGTGTCAATTTTTGTTTGGGTACAGTTAATTGGGCTTTAGTGCATTTCACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTTCAGATTTTCATGGGCAGTGGCGTCCCTTTTCTTTCTTTTGGAATTTTTCTACGCCCATACATACTTTTCAGGATCAAAACTTCGAAACAAAAAAATAAACTCACAAATAAGGAAGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCATCTTATCATTTGGAAGTA</pcr_primer_p1>
		<pcr_primer_p2>ATCATTGGGTACTCAACAAGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCCATCTTATCATTTGGAAGTATACCAATATTTCCGGAAGACACTCCGACGGGATTGCTAACTTGATATGATACACGAATATCTTGTGCACCGGGTAGGCCCAATTCGAGTAAACTTGGAACATGCGACAATGAGATACTTGATGATTGGCGATAAATTGGATCCATTGCTCTCTCTATAACTCCTGGAGAGGGAAGGTAGATCGAACCTAGTAATCCTGGAATCCTGACTTGTTGAGTACCCAATGAT</canonical_amplicon>
		<polymorphic_amplicon>CTCCATCTTATCATTTGGAAGTATACCAATATTTCCGGAAGACACTCCGACGGGATTGCTAACTTGATATGATACACGAATATCTTGTGCACCGGGTAGGCCCAATTCGAGTAAACTTGGAACATGCGACAATGWGATACTTGATGATTGGCGATAAATTGGATCCATTGCTCTCTCTATAACTCCTGGAGAGGGAAGGTAGATCGAACCTAGTAATCCTGGAATCCTGACTTGTTGAGTACCCAATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22322</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>118515</contig_pos>
        <strand>+</strand>
        <context>GAACCTAGTA[A/G]TCCTGGAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTGCTCTCTCTATAACTCCTGGAGAGGGAAGGTAGATCGAACCTAGTA</left_flank>
        <right_flank>TCCTGGAATCCTGACTTGTTGAGTACCCAATGATCCATGATGAGCTTGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGATTCGATTTTTAAAATTTATTGATTTTTTTCTTACAATTTCTTCTCCGTCTCATAACAATTTTTCAAAGCCGAGTTTTGAGTTGAAACTGGTCCAGATTGGGATTGTGAAATCTGAAAAGAAGTATGAAAAATGAGGGTTCCTTTGCCAATAACACAATATTTGATTTTTTTTAGTTTTGCACCAACTCACCTGATCCGTTGCCGGCTGGTGTTTTTCTGGATTGGAAAATGGTTTCTTTTGAACAATATTATCTTGTAAACTTCGTCGGTCCATTGTCTGCTCCATCTTATCATTTGGAAGTATACCAATATTTCCGGAAGACACTCCGACGGGATTGCTAACTTGATATGATACACGAATATCTTGTGCACCGGGTAGGCCCAATTCGAGTAAACTTGGAACATGCGACAATGAGATACTTGATGATTGGCGATAAATTGGATCCATTGCTCTCTCTATAACTCCTGGAGAGGGAAGGTAGATCGAACCTAGTAATCCTGGAATCCTGACTTGTTGAGTACCCAATGATCCATGATGAGCTTGATTGTTCTGAAAATGTATTTTTAACAGCATTTGTCTTCTTGTTTTTTGTCTAAACTAGACTCTACCCGCCCCATCAAAAATTAAACATCTCAATTTTGAATAACAAAAAATCAGAATTTAGATTTGAACAACGCTATTCTGATCAACAATCTCCAGAGTGTCAATTTTTGTTTGGGTACAGTTAATTGGGCTTTAGTGCATTTCACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTTCAGATTTTCATGGGCAGTGGCGTCCCTTTTCTTTCTTTTGGAATTTTTCTACGCCCATACATACTTTTCAGGATCAAAACTTCGAAACAAAAAAATAAACTCACAAATAAGGAAGAAGGAATTGGAAAACTTGAAGAATTCTGCATCAGTGGTGTACTTGCACCTGGAGGACCAGTGCAGCTTCCTCCAAAAACTGAAT</canonical>
            <polymorphic>GTGATTCGATTTTTAAAATTTATTGATTTTTTTCTTACAATTTCTTCTCCGTCTCATAACAATTTTTCAAAGCCGAGTTTTGAGTTGAAACTGGTCCAGATTGGGATTGTGAAATCTGAAAAGAAGTATGAAAAATGAGGGTTCCTTTGCCAATAACACAATATTTGATTTTTTTTAGTTTTGCACCAACTCACCTGATCCGTTGCCGGCTGGTGTTTTTCTGGATTGGAAAATGGTTTCTTTTGAACAATATTATCTTGTAAACTTCGTCGGTCCATTGTCTGCTCCATCTTATCATTTGGAAGTATACCAATATTTCCGGAAGACACTCCGACGGGATTGCTAACTTGATATGATACACGAATATCTTGTGCACCGGGTAGGCCCAATTCGAGTAAACTTGGAACATGCGACAATGAGATACTTGATGATTGGCGATAAATTGGATCCATTGCTCTCTCTATAACTCCTGGAGAGGGAAGGTAGATCGAACCTAGTARTCCTGGAATCCTGACTTGTTGAGTACCCAATGATCCATGATGAGCTTGATTGTTCTGAAAATGTATTTTTAACAGCATTTGTCTTCTTGTTTTTTGTCTAAACTAGACTCTACCCGCCCCATCAAAAATTAAACATCTCAATTTTGAATAACAAAAAATCAGAATTTAGATTTGAACAACGCTATTCTGATCAACAATCTCCAGAGTGTCAATTTTTGTTTGGGTACAGTTAATTGGGCTTTAGTGCATTTCACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTTCAGATTTTCATGGGCAGTGGCGTCCCTTTTCTTTCTTTTGGAATTTTTCTACGCCCATACATACTTTTCAGGATCAAAACTTCGAAACAAAAAAATAAACTCACAAATAAGGAAGAAGGAATTGGAAAACTTGAAGAATTCTGCATCAGTGGTGTACTTGCACCTGGAGGACCAGTGCAGCTTCCTCCAAAAACTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATCCATTGCTCTCTCTATAAC</pcr_primer_p1>
		<pcr_primer_p2>TCAGAATAGCGTTGTTCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGATCCATTGCTCTCTCTATAACTCCTGGAGAGGGAAGGTAGATCGAACCTAGTAATCCTGGAATCCTGACTTGTTGAGTACCCAATGATCCATGATGAGCTTGATTGTTCTGAAAATGTATTTTTAACAGCATTTGTCTTCTTGTTTTTTGTCTAAACTAGACTCTACCCGCCCCATCAAAAATTAAACATCTCAATTTTGAATAACAAAAAATCAGAATTTAGATTTGAACAACGCTATTCTGA</canonical_amplicon>
		<polymorphic_amplicon>GGATCCATTGCTCTCTCTATAACTCCTGGAGAGGGAAGGTAGATCGAACCTAGTARTCCTGGAATCCTGACTTGTTGAGTACCCAATGATCCATGATGAGCTTGATTGTTCTGAAAATGTATTTTTAACAGCATTTGTCTTCTTGTTTTTTGTCTAAACTAGACTCTACCCGCCCCATCAAAAATTAAACATCTCAATTTTGAATAACAAAAAATCAGAATTTAGATTTGAACAACGCTATTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22323</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>118585</contig_pos>
        <strand>+</strand>
        <context>AATGTATTTT[C/T]AACAGCATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAGTACCCAATGATCCATGATGAGCTTGATTGTTCTGAAAATGTATTTT</left_flank>
        <right_flank>AACAGCATTTGTCTTCTTGTTTTTTGTCTAAACTAGACTCTACCCGCCCC</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCCGAGTTTTGAGTTGAAACTGGTCCAGATTGGGATTGTGAAATCTGAAAAGAAGTATGAAAAATGAGGGTTCCTTTGCCAATAACACAATATTTGATTTTTTTTAGTTTTGCACCAACTCACCTGATCCGTTGCCGGCTGGTGTTTTTCTGGATTGGAAAATGGTTTCTTTTGAACAATATTATCTTGTAAACTTCGTCGGTCCATTGTCTGCTCCATCTTATCATTTGGAAGTATACCAATATTTCCGGAAGACACTCCGACGGGATTGCTAACTTGATATGATACACGAATATCTTGTGCACCGGGTAGGCCCAATTCGAGTAAACTTGGAACATGCGACAATGAGATACTTGATGATTGGCGATAAATTGGATCCATTGCTCTCTCTATAACTCCTGGAGAGGGAAGGTAGATCGAACCTAGTAATCCTGGAATCCTGACTTGTTGAGTACCCAATGATCCATGATGAGCTTGATTGTTCTGAAAATGTATTTTTAACAGCATTTGTCTTCTTGTTTTTTGTCTAAACTAGACTCTACCCGCCCCATCAAAAATTAAACATCTCAATTTTGAATAACAAAAAATCAGAATTTAGATTTGAACAACGCTATTCTGATCAACAATCTCCAGAGTGTCAATTTTTGTTTGGGTACAGTTAATTGGGCTTTAGTGCATTTCACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTTCAGATTTTCATGGGCAGTGGCGTCCCTTTTCTTTCTTTTGGAATTTTTCTACGCCCATACATACTTTTCAGGATCAAAACTTCGAAACAAAAAAATAAACTCACAAATAAGGAAGAAGGAATTGGAAAACTTGAAGAATTCTGCATCAGTGGTGTACTTGCACCTGGAGGACCAGTGCAGCTTCCTCCAAAAACTGAATTCGATTCACCAGACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAA</canonical>
            <polymorphic>AGCCGAGTTTTGAGTTGAAACTGGTCCAGATTGGGATTGTGAAATCTGAAAAGAAGTATGAAAAATGAGGGTTCCTTTGCCAATAACACAATATTTGATTTTTTTTAGTTTTGCACCAACTCACCTGATCCGTTGCCGGCTGGTGTTTTTCTGGATTGGAAAATGGTTTCTTTTGAACAATATTATCTTGTAAACTTCGTCGGTCCATTGTCTGCTCCATCTTATCATTTGGAAGTATACCAATATTTCCGGAAGACACTCCGACGGGATTGCTAACTTGATATGATACACGAATATCTTGTGCACCGGGTAGGCCCAATTCGAGTAAACTTGGAACATGCGACAATGAGATACTTGATGATTGGCGATAAATTGGATCCATTGCTCTCTCTATAACTCCTGGAGAGGGAAGGTAGATCGAACCTAGTAATCCTGGAATCCTGACTTGTTGAGTACCCAATGATCCATGATGAGCTTGATTGTTCTGAAAATGTATTTTYAACAGCATTTGTCTTCTTGTTTTTTGTCTAAACTAGACTCTACCCGCCCCATCAAAAATTAAACATCTCAATTTTGAATAACAAAAAATCAGAATTTAGATTTGAACAACGCTATTCTGATCAACAATCTCCAGAGTGTCAATTTTTGTTTGGGTACAGTTAATTGGGCTTTAGTGCATTTCACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTTCAGATTTTCATGGGCAGTGGCGTCCCTTTTCTTTCTTTTGGAATTTTTCTACGCCCATACATACTTTTCAGGATCAAAACTTCGAAACAAAAAAATAAACTCACAAATAAGGAAGAAGGAATTGGAAAACTTGAAGAATTCTGCATCAGTGGTGTACTTGCACCTGGAGGACCAGTGCAGCTTCCTCCAAAAACTGAATTCGATTCACCAGACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>499 292 101 60 48</canonical_bands>
                <polymorphic_bands>559 292 101 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATCCTGACTTGTTGAGTACC</pcr_primer_p1>
		<pcr_primer_p2>ACTAAAGCCCAATTAACTGTACC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GAATCCTGACTTGTTGAGTACCCAATGATCCATGATGAGCTTGATTGTTCTGAAAATGTATTTTTAACAGCATTTGTCTTCTTGTTTTTTGTCTAAACTAGACTCTACCCGCCCCATCAAAAATTAAACATCTCAATTTTGAATAACAAAAAATCAGAATTTAGATTTGAACAACGCTATTCTGATCAACAATCTCCAGAGTGTCAATTTTTGTTTGGGTACAGTTAATTGGGCTTTAGT</canonical_amplicon>
		<polymorphic_amplicon>GAATCCTGACTTGTTGAGTACCCAATGATCCATGATGAGCTTGATTGTTCTGAAAATGTATTTTYAACAGCATTTGTCTTCTTGTTTTTTGTCTAAACTAGACTCTACCCGCCCCATCAAAAATTAAACATCTCAATTTTGAATAACAAAAAATCAGAATTTAGATTTGAACAACGCTATTCTGATCAACAATCTCCAGAGTGTCAATTTTTGTTTGGGTACAGTTAATTGGGCTTTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22324</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>118817</contig_pos>
        <strand>+</strand>
        <context>ATAATATTTT[C/T]AGATTTTCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTT</left_flank>
        <right_flank>AGATTTTCATGGGCAGTGGCGTCCCTTTTCTTTCTTTTGGAATTTTTCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTATACCAATATTTCCGGAAGACACTCCGACGGGATTGCTAACTTGATATGATACACGAATATCTTGTGCACCGGGTAGGCCCAATTCGAGTAAACTTGGAACATGCGACAATGAGATACTTGATGATTGGCGATAAATTGGATCCATTGCTCTCTCTATAACTCCTGGAGAGGGAAGGTAGATCGAACCTAGTAATCCTGGAATCCTGACTTGTTGAGTACCCAATGATCCATGATGAGCTTGATTGTTCTGAAAATGTATTTTTAACAGCATTTGTCTTCTTGTTTTTTGTCTAAACTAGACTCTACCCGCCCCATCAAAAATTAAACATCTCAATTTTGAATAACAAAAAATCAGAATTTAGATTTGAACAACGCTATTCTGATCAACAATCTCCAGAGTGTCAATTTTTGTTTGGGTACAGTTAATTGGGCTTTAGTGCATTTCACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTTCAGATTTTCATGGGCAGTGGCGTCCCTTTTCTTTCTTTTGGAATTTTTCTACGCCCATACATACTTTTCAGGATCAAAACTTCGAAACAAAAAAATAAACTCACAAATAAGGAAGAAGGAATTGGAAAACTTGAAGAATTCTGCATCAGTGGTGTACTTGCACCTGGAGGACCAGTGCAGCTTCCTCCAAAAACTGAATTCGATTCACCAGACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAAATCGGAAGAAAATGAAGGTTGGTGACCATTTGAACCTAATTTATGTTGCCTTGGATTGGTTGTTCTGCCGTTATTTGCCCTTCGGAGCAGCTTTAATTCATATTTATAATCGTCTTTTTGTCTGCCCTGAAAAATATGAGTTGAAAAAAACTAAGAATATGTACAGTTTCTTAACAACCATGGAAGAAAATCAGAAATTCGAAACACTCTTTCACATGTCTTTGAAATCTAC</canonical>
            <polymorphic>AAGTATACCAATATTTCCGGAAGACACTCCGACGGGATTGCTAACTTGATATGATACACGAATATCTTGTGCACCGGGTAGGCCCAATTCGAGTAAACTTGGAACATGCGACAATGAGATACTTGATGATTGGCGATAAATTGGATCCATTGCTCTCTCTATAACTCCTGGAGAGGGAAGGTAGATCGAACCTAGTAATCCTGGAATCCTGACTTGTTGAGTACCCAATGATCCATGATGAGCTTGATTGTTCTGAAAATGTATTTTTAACAGCATTTGTCTTCTTGTTTTTTGTCTAAACTAGACTCTACCCGCCCCATCAAAAATTAAACATCTCAATTTTGAATAACAAAAAATCAGAATTTAGATTTGAACAACGCTATTCTGATCAACAATCTCCAGAGTGTCAATTTTTGTTTGGGTACAGTTAATTGGGCTTTAGTGCATTTCACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTTYAGATTTTCATGGGCAGTGGCGTCCCTTTTCTTTCTTTTGGAATTTTTCTACGCCCATACATACTTTTCAGGATCAAAACTTCGAAACAAAAAAATAAACTCACAAATAAGGAAGAAGGAATTGGAAAACTTGAAGAATTCTGCATCAGTGGTGTACTTGCACCTGGAGGACCAGTGCAGCTTCCTCCAAAAACTGAATTCGATTCACCAGACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAAATCGGAAGAAAATGAAGGTTGGTGACCATTTGAACCTAATTTATGTTGCCTTGGATTGGTTGTTCTGCCGTTATTTGCCCTTCGGAGCAGCTTTAATTCATATTTATAATCGTCTTTTTGTCTGCCCTGAAAAATATGAGTTGAAAAAAACTAAGAATATGTACAGTTTCTTAACAACCATGGAAGAAAATCAGAAATTCGAAACACTCTTTCACATGTCTTTGAAATCTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>271 224 109 105 97 80 39 30 27 18</canonical_bands>
                <polymorphic_bands>289 224 109 105 97 80 39 30 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATCAAAAATTAAACATCTCAA</pcr_primer_p1>
		<pcr_primer_p2>AGTATGTATGGGCGTAGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCATCAAAAATTAAACATCTCAATTTTGAATAACAAAAAATCAGAATTTAGATTTGAACAACGCTATTCTGATCAACAATCTCCAGAGTGTCAATTTTTGTTTGGGTACAGTTAATTGGGCTTTAGTGCATTTCACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTTCAGATTTTCATGGGCAGTGGCGTCCCTTTTCTTTCTTTTGGAATTTTTCTACGCCCATACATACT</canonical_amplicon>
		<polymorphic_amplicon>CCATCAAAAATTAAACATCTCAATTTTGAATAACAAAAAATCAGAATTTAGATTTGAACAACGCTATTCTGATCAACAATCTCCAGAGTGTCAATTTTTGTTTGGGTACAGTTAATTGGGCTTTAGTGCATTTCACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTTYAGATTTTCATGGGCAGTGGCGTCCCTTTTCTTTCTTTTGGAATTTTTCTACGCCCATACATACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22325</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>119495</contig_pos>
        <strand>+</strand>
        <context>TTGGTATTGT[G/T]GAGTGCCGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCTGTTTTGAACCACACTTCTTCATTTTTGGGTCCGGCCTTTGGTATTGT</left_flank>
        <right_flank>GAGTGCCGTCACCACCGTTTCCAGGCTGATTAAATATGCTCGAATAATGT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTTCCTCCAAAAACTGAATTCGATTCACCAGACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAAATCGGAAGAAAATGAAGGTTGGTGACCATTTGAACCTAATTTATGTTGCCTTGGATTGGTTGTTCTGCCGTTATTTGCCCTTCGGAGCAGCTTTAATTCATATTTATAATCGTCTTTTTGTCTGCCCTGAAAAATATGAGTTGAAAAAAACTAAGAATATGTACAGTTTCTTAACAACCATGGAAGAAAATCAGAAATTCGAAACACTCTTTCACATGTCTTTGAAATCTACTTAAGATAAATTCGCAGGATTCATGTACTGGAAATAGAGAAATCGACCGAACTCACCAGTGTTCGATTGTGAACTTCGCGACAAGTGCATTTAGTCTCGCGGCACATTTTCCATTTTTTGATGTTTGCCTGTTTTGAACCACACTTCTTCATTTTTGGGTCCGGCCTTTGGTATTGTGGAGTGCCGTCACCACCGTTTCCAGGCTGATTAAATATGCTCGAATAATGTTCTGGACCATCGGTTGATTTCTTCTCAATGTGTTGTAGAACTTGAATTTCATTATCGTCCTCGTCTAGTGAGTATTTTATTGCTATCCCCGCCAGGTAGTGATTCATTGTGGACGTGTCAGTCAAATTGAGTTGTAGCTTATTCATATTTGCGGACGAGTTTGAAGGCGGGTACACAGGTTTTACAATATGTTGTGGTACAAATGGCATTGGACAGAACATGTTTGGTAACCCGAAAAAAAAGATAAATATAAAAGTGAGATACCATAACCACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATG</canonical>
            <polymorphic>GCTTCCTCCAAAAACTGAATTCGATTCACCAGACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAAATCGGAAGAAAATGAAGGTTGGTGACCATTTGAACCTAATTTATGTTGCCTTGGATTGGTTGTTCTGCCGTTATTTGCCCTTCGGAGCAGCTTTAATTCATATTTATAATCGTCTTTTTGTCTGCCCTGAAAAATATGAGTTGAAAAAAACTAAGAATATGTACAGTTTCTTAACAACCATGGAAGAAAATCAGAAATTCGAAACACTCTTTCACATGTCTTTGAAATCTACTTAAGATAAATTCGCAGGATTCATGTACTGGAAATAGAGAAATCGACCGAACTCACCAGTGTTCGATTGTGAACTTCGCGACAAGTGCATTTAGTCTCGCGGCACATTTTCCATTTTTTGATGTTTGCCTGTTTTGAACCACACTTCTTCATTTTTGGGTCCGGCCTTTGGTATTGTKGAGTGCCGTCACCACCGTTTCCAGGCTGATTAAATATGCTCGAATAATGTTCTGGACCATCGGTTGATTTCTTCTCAATGTGTTGTAGAACTTGAATTTCATTATCGTCCTCGTCTAGTGAGTATTTTATTGCTATCCCCGCCAGGTAGTGATTCATTGTGGACGTGTCAGTCAAATTGAGTTGTAGCTTATTCATATTTGCGGACGAGTTTGAAGGCGGGTACACAGGTTTTACAATATGTTGTGGTACAAATGGCATTGGACAGAACATGTTTGGTAACCCGAAAAAAAAGATAAATATAAAAGTGAGATACCATAACCACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>182 73 68 62 58 50 48 46 38 38 37 35 32 31 28 21 21 17 17 16 14 12 10 10 8 6 6 6 5 3 2</canonical_bands>
                <polymorphic_bands>182 73 68 62 58 50 48 46 40 38 38 37 32 31 28 21 21 17 17 16 14 12 10 10 8 6 6 6 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGATTCATGTACTGGAAATAGA</pcr_primer_p1>
		<pcr_primer_p2>TACAACACATTGAGAAGAAATCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGATTCATGTACTGGAAATAGAGAAATCGACCGAACTCACCAGTGTTCGATTGTGAACTTCGCGACAAGTGCATTTAGTCTCGCGGCACATTTTCCATTTTTTGATGTTTGCCTGTTTTGAACCACACTTCTTCATTTTTGGGTCCGGCCTTTGGTATTGTGGAGTGCCGTCACCACCGTTTCCAGGCTGATTAAATATGCTCGAATAATGTTCTGGACCATCGGTTGATTTCTTCTCAATGTGTTGTA</canonical_amplicon>
		<polymorphic_amplicon>AGGATTCATGTACTGGAAATAGAGAAATCGACCGAACTCACCAGTGTTCGATTGTGAACTTCGCGACAAGTGCATTTAGTCTCGCGGCACATTTTCCATTTTTTGATGTTTGCCTGTTTTGAACCACACTTCTTCATTTTTGGGTCCGGCCTTTGGTATTGTKGAGTGCCGTCACCACCGTTTCCAGGCTGATTAAATATGCTCGAATAATGTTCTGGACCATCGGTTGATTTCTTCTCAATGTGTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22326</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>119428</contig_pos>
        <strand>+</strand>
        <context>GGCACATTTT[C/G]CATTTTTTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTTCGATTGTGAACTTCGCGACAAGTGCATTTAGTCTCGCGGCACATTTT</left_flank>
        <right_flank>CATTTTTTGATGTTTGCCTGTTTTGAACCACACTTCTTCATTTTTGGGTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAGGAATTGGAAAACTTGAAGAATTCTGCATCAGTGGTGTACTTGCACCTGGAGGACCAGTGCAGCTTCCTCCAAAAACTGAATTCGATTCACCAGACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAAATCGGAAGAAAATGAAGGTTGGTGACCATTTGAACCTAATTTATGTTGCCTTGGATTGGTTGTTCTGCCGTTATTTGCCCTTCGGAGCAGCTTTAATTCATATTTATAATCGTCTTTTTGTCTGCCCTGAAAAATATGAGTTGAAAAAAACTAAGAATATGTACAGTTTCTTAACAACCATGGAAGAAAATCAGAAATTCGAAACACTCTTTCACATGTCTTTGAAATCTACTTAAGATAAATTCGCAGGATTCATGTACTGGAAATAGAGAAATCGACCGAACTCACCAGTGTTCGATTGTGAACTTCGCGACAAGTGCATTTAGTCTCGCGGCACATTTTCCATTTTTTGATGTTTGCCTGTTTTGAACCACACTTCTTCATTTTTGGGTCCGGCCTTTGGTATTGTGGAGTGCCGTCACCACCGTTTCCAGGCTGATTAAATATGCTCGAATAATGTTCTGGACCATCGGTTGATTTCTTCTCAATGTGTTGTAGAACTTGAATTTCATTATCGTCCTCGTCTAGTGAGTATTTTATTGCTATCCCCGCCAGGTAGTGATTCATTGTGGACGTGTCAGTCAAATTGAGTTGTAGCTTATTCATATTTGCGGACGAGTTTGAAGGCGGGTACACAGGTTTTACAATATGTTGTGGTACAAATGGCATTGGACAGAACATGTTTGGTAACCCGAAAAAAAAGATAAATATAAAAGTGAGATACCATAACCACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTT</canonical>
            <polymorphic>AAGAAGGAATTGGAAAACTTGAAGAATTCTGCATCAGTGGTGTACTTGCACCTGGAGGACCAGTGCAGCTTCCTCCAAAAACTGAATTCGATTCACCAGACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAAATCGGAAGAAAATGAAGGTTGGTGACCATTTGAACCTAATTTATGTTGCCTTGGATTGGTTGTTCTGCCGTTATTTGCCCTTCGGAGCAGCTTTAATTCATATTTATAATCGTCTTTTTGTCTGCCCTGAAAAATATGAGTTGAAAAAAACTAAGAATATGTACAGTTTCTTAACAACCATGGAAGAAAATCAGAAATTCGAAACACTCTTTCACATGTCTTTGAAATCTACTTAAGATAAATTCGCAGGATTCATGTACTGGAAATAGAGAAATCGACCGAACTCACCAGTGTTCGATTGTGAACTTCGCGACAAGTGCATTTAGTCTCGCGGCACATTTTSCATTTTTTGATGTTTGCCTGTTTTGAACCACACTTCTTCATTTTTGGGTCCGGCCTTTGGTATTGTGGAGTGCCGTCACCACCGTTTCCAGGCTGATTAAATATGCTCGAATAATGTTCTGGACCATCGGTTGATTTCTTCTCAATGTGTTGTAGAACTTGAATTTCATTATCGTCCTCGTCTAGTGAGTATTTTATTGCTATCCCCGCCAGGTAGTGATTCATTGTGGACGTGTCAGTCAAATTGAGTTGTAGCTTATTCATATTTGCGGACGAGTTTGAAGGCGGGTACACAGGTTTTACAATATGTTGTGGTACAAATGGCATTGGACAGAACATGTTTGGTAACCCGAAAAAAAAGATAAATATAAAAGTGAGATACCATAACCACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGATTCATGTACTGGAAATAGA</pcr_primer_p1>
		<pcr_primer_p2>TACAACACATTGAGAAGAAATCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGATTCATGTACTGGAAATAGAGAAATCGACCGAACTCACCAGTGTTCGATTGTGAACTTCGCGACAAGTGCATTTAGTCTCGCGGCACATTTTCCATTTTTTGATGTTTGCCTGTTTTGAACCACACTTCTTCATTTTTGGGTCCGGCCTTTGGTATTGTGGAGTGCCGTCACCACCGTTTCCAGGCTGATTAAATATGCTCGAATAATGTTCTGGACCATCGGTTGATTTCTTCTCAATGTGTTGTA</canonical_amplicon>
		<polymorphic_amplicon>AGGATTCATGTACTGGAAATAGAGAAATCGACCGAACTCACCAGTGTTCGATTGTGAACTTCGCGACAAGTGCATTTAGTCTCGCGGCACATTTTSCATTTTTTGATGTTTGCCTGTTTTGAACCACACTTCTTCATTTTTGGGTCCGGCCTTTGGTATTGTGGAGTGCCGTCACCACCGTTTCCAGGCTGATTAAATATGCTCGAATAATGTTCTGGACCATCGGTTGATTTCTTCTCAATGTGTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22327</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>119091</contig_pos>
        <strand>+</strand>
        <context>GTCAAATCGG[A/T]AGAAAATGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAAATCGG</left_flank>
        <right_flank>AGAAAATGAAGGTTGGTGACCATTTGAACCTAATTTATGTTGCCTTGGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTGTCTTCTTGTTTTTTGTCTAAACTAGACTCTACCCGCCCCATCAAAAATTAAACATCTCAATTTTGAATAACAAAAAATCAGAATTTAGATTTGAACAACGCTATTCTGATCAACAATCTCCAGAGTGTCAATTTTTGTTTGGGTACAGTTAATTGGGCTTTAGTGCATTTCACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTTCAGATTTTCATGGGCAGTGGCGTCCCTTTTCTTTCTTTTGGAATTTTTCTACGCCCATACATACTTTTCAGGATCAAAACTTCGAAACAAAAAAATAAACTCACAAATAAGGAAGAAGGAATTGGAAAACTTGAAGAATTCTGCATCAGTGGTGTACTTGCACCTGGAGGACCAGTGCAGCTTCCTCCAAAAACTGAATTCGATTCACCAGACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAAATCGGAAGAAAATGAAGGTTGGTGACCATTTGAACCTAATTTATGTTGCCTTGGATTGGTTGTTCTGCCGTTATTTGCCCTTCGGAGCAGCTTTAATTCATATTTATAATCGTCTTTTTGTCTGCCCTGAAAAATATGAGTTGAAAAAAACTAAGAATATGTACAGTTTCTTAACAACCATGGAAGAAAATCAGAAATTCGAAACACTCTTTCACATGTCTTTGAAATCTACTTAAGATAAATTCGCAGGATTCATGTACTGGAAATAGAGAAATCGACCGAACTCACCAGTGTTCGATTGTGAACTTCGCGACAAGTGCATTTAGTCTCGCGGCACATTTTCCATTTTTTGATGTTTGCCTGTTTTGAACCACACTTCTTCATTTTTGGGTCCGGCCTTTGGTATTGTGGAGTGCCGTCACCACCGTTTCCAGGCTGATTAAATATGCTCGAATAATGTTCTGGACCATCGGTTGATTTCTTCTCAATGTGTTGTAGAACTTGAA</canonical>
            <polymorphic>ATTTGTCTTCTTGTTTTTTGTCTAAACTAGACTCTACCCGCCCCATCAAAAATTAAACATCTCAATTTTGAATAACAAAAAATCAGAATTTAGATTTGAACAACGCTATTCTGATCAACAATCTCCAGAGTGTCAATTTTTGTTTGGGTACAGTTAATTGGGCTTTAGTGCATTTCACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTTCAGATTTTCATGGGCAGTGGCGTCCCTTTTCTTTCTTTTGGAATTTTTCTACGCCCATACATACTTTTCAGGATCAAAACTTCGAAACAAAAAAATAAACTCACAAATAAGGAAGAAGGAATTGGAAAACTTGAAGAATTCTGCATCAGTGGTGTACTTGCACCTGGAGGACCAGTGCAGCTTCCTCCAAAAACTGAATTCGATTCACCAGACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAAATCGGWAGAAAATGAAGGTTGGTGACCATTTGAACCTAATTTATGTTGCCTTGGATTGGTTGTTCTGCCGTTATTTGCCCTTCGGAGCAGCTTTAATTCATATTTATAATCGTCTTTTTGTCTGCCCTGAAAAATATGAGTTGAAAAAAACTAAGAATATGTACAGTTTCTTAACAACCATGGAAGAAAATCAGAAATTCGAAACACTCTTTCACATGTCTTTGAAATCTACTTAAGATAAATTCGCAGGATTCATGTACTGGAAATAGAGAAATCGACCGAACTCACCAGTGTTCGATTGTGAACTTCGCGACAAGTGCATTTAGTCTCGCGGCACATTTTCCATTTTTTGATGTTTGCCTGTTTTGAACCACACTTCTTCATTTTTGGGTCCGGCCTTTGGTATTGTGGAGTGCCGTCACCACCGTTTCCAGGCTGATTAAATATGCTCGAATAATGTTCTGGACCATCGGTTGATTTCTTCTCAATGTGTTGTAGAACTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>313 271 109 97 85 80 27 18</canonical_bands>
                <polymorphic_bands>351 313 109 97 85 27 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTTTTCAATTTCTTGCTCAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCTTCCATGGTTGTTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAAATCGGAAGAAAATGAAGGTTGGTGACCATTTGAACCTAATTTATGTTGCCTTGGATTGGTTGTTCTGCCGTTATTTGCCCTTCGGAGCAGCTTTAATTCATATTTATAATCGTCTTTTTGTCTGCCCTGAAAAATATGAGTTGAAAAAAACTAAGAATATGTACAGTTTCTTAACAACCATGGAAGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>GACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAAATCGGWAGAAAATGAAGGTTGGTGACCATTTGAACCTAATTTATGTTGCCTTGGATTGGTTGTTCTGCCGTTATTTGCCCTTCGGAGCAGCTTTAATTCATATTTATAATCGTCTTTTTGTCTGCCCTGAAAAATATGAGTTGAAAAAAACTAAGAATATGTACAGTTTCTTAACAACCATGGAAGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22328</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>120483</contig_pos>
        <strand>+</strand>
        <context>CCAGAGAGTG[A/T]AAGATTACCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGCAATCAAATTTTTTAAACAAAAGATGTTGTGAAGAAGCCAGAGAGTG</left_flank>
        <right_flank>AAGATTACCAAAAAGGAATATGAAATAAGAGAACTCCGACTAGAAAAAAA</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAATGATTCAACATGAATTAAATGCAAATATGAAGGACTGAGGTTGAGCAAAATGTACTCAACGATCAGAAATTGTTCGTTGTATAGACTACTAGTGGTGGGCGTGATTGGGTTTTGTTTTCGATCTCTAACAGAAGACGTGCAGGAGGGCAAAACAAAAATTGTTTCCCGTGAGACACTCCGACACGTGGCCTATAGTATAGGCCTTATACTCAAATTAGATCAAATATGTGCAATCAAATTTTTTAAACAAAAGATGTTGTGAAGAAGCCAGAGAGTGTAAGATTACCAAAAAGGAATATGAAATAAGAGAACTCCGACTAGAAAAAAAAGAACGAAAGATCGCTTTTTTTTCGTGTTTTGTGTGAACTCGAGTAGAGATCAAGGAAATCGAATCTTAATCTTGTTTGCATTAATTCGGTTGGTATTTTGAACAGAAATTTGTAGAAAAAAAGAGGAGGAAGTCTGTTTCTGTAGCTTTCGAAATCAAACGGAAAGAGCATAATGCGTTTTGCAAATCGGTCTAATTAGTACACAACAACATTGTCAGCAAGTCAAAAGTTTGACAAGTCTAGTTTTTAGATATTTGGAATTCTGATGCAGATCTTCAAAAACATGCAAAAAAAAAACGTTTTGACTTCCTGGTCAGAAGCACGTTTAATAAGATTTTAGTACGTTAAAATATTTCAATCTAGTTGATCTCTAGGATCGCTAGGATCAACCAAGGTATAAGTGGTTCTGAAAACAACCAAGAAAAAATATGGAAGAAGATTTTTTAACG</canonical>
            <polymorphic>TAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAATGATTCAACATGAATTAAATGCAAATATGAAGGACTGAGGTTGAGCAAAATGTACTCAACGATCAGAAATTGTTCGTTGTATAGACTACTAGTGGTGGGCGTGATTGGGTTTTGTTTTCGATCTCTAACAGAAGACGTGCAGGAGGGCAAAACAAAAATTGTTTCCCGTGAGACACTCCGACACGTGGCCTATAGTATAGGCCTTATACTCAAATTAGATCAAATATGTGCAATCAAATTTTTTAAACAAAAGATGTTGTGAAGAAGCCAGAGAGTGWAAGATTACCAAAAAGGAATATGAAATAAGAGAACTCCGACTAGAAAAAAAAGAACGAAAGATCGCTTTTTTTTCGTGTTTTGTGTGAACTCGAGTAGAGATCAAGGAAATCGAATCTTAATCTTGTTTGCATTAATTCGGTTGGTATTTTGAACAGAAATTTGTAGAAAAAAAGAGGAGGAAGTCTGTTTCTGTAGCTTTCGAAATCAAACGGAAAGAGCATAATGCGTTTTGCAAATCGGTCTAATTAGTACACAACAACATTGTCAGCAAGTCAAAAGTTTGACAAGTCTAGTTTTTAGATATTTGGAATTCTGATGCAGATCTTCAAAAACATGCAAAAAAAAAACGTTTTGACTTCCTGGTCAGAAGCACGTTTAATAAGATTTTAGTACGTTAAAATATTTCAATCTAGTTGATCTCTAGGATCGCTAGGATCAACCAAGGTATAAGTGGTTCTGAAAACAACCAAGAAAAAATATGGAAGAAGATTTTTTAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATCAAATATGTGCAATCAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAACAGACTTCCTCCTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGATCAAATATGTGCAATCAAATTTTTTAAACAAAAGATGTTGTGAAGAAGCCAGAGAGTGTAAGATTACCAAAAAGGAATATGAAATAAGAGAACTCCGACTAGAAAAAAAAGAACGAAAGATCGCTTTTTTTTCGTGTTTTGTGTGAACTCGAGTAGAGATCAAGGAAATCGAATCTTAATCTTGTTTGCATTAATTCGGTTGGTATTTTGAACAGAAATTTGTAGAAAAAAAGAGGAGGAAGTCTGTTT</canonical_amplicon>
		<polymorphic_amplicon>AGATCAAATATGTGCAATCAAATTTTTTAAACAAAAGATGTTGTGAAGAAGCCAGAGAGTGWAAGATTACCAAAAAGGAATATGAAATAAGAGAACTCCGACTAGAAAAAAAAGAACGAAAGATCGCTTTTTTTTCGTGTTTTGTGTGAACTCGAGTAGAGATCAAGGAAATCGAATCTTAATCTTGTTTGCATTAATTCGGTTGGTATTTTGAACAGAAATTTGTAGAAAAAAAGAGGAGGAAGTCTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22329</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>120353</contig_pos>
        <strand>+</strand>
        <context>TGCAGGAGGG[A/C]AAAACAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGCGTGATTGGGTTTTGTTTTCGATCTCTAACAGAAGACGTGCAGGAGGG</left_flank>
        <right_flank>AAAACAAAAATTGTTTCCCGTGAGACACTCCGACACGTGGCCTATAGTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAATGATTCAACATGAATTAAATGCAAATATGAAGGACTGAGGTTGAGCAAAATGTACTCAACGATCAGAAATTGTTCGTTGTATAGACTACTAGTGGTGGGCGTGATTGGGTTTTGTTTTCGATCTCTAACAGAAGACGTGCAGGAGGGCAAAACAAAAATTGTTTCCCGTGAGACACTCCGACACGTGGCCTATAGTATAGGCCTTATACTCAAATTAGATCAAATATGTGCAATCAAATTTTTTAAACAAAAGATGTTGTGAAGAAGCCAGAGAGTGTAAGATTACCAAAAAGGAATATGAAATAAGAGAACTCCGACTAGAAAAAAAAGAACGAAAGATCGCTTTTTTTTCGTGTTTTGTGTGAACTCGAGTAGAGATCAAGGAAATCGAATCTTAATCTTGTTTGCATTAATTCGGTTGGTATTTTGAACAGAAATTTGTAGAAAAAAAGAGGAGGAAGTCTGTTTCTGTAGCTTTCGAAATCAAACGGAAAGAGCATAATGCGTTTTGCAAATCGGTCTAATTAGTACACAACAACATTGTCAGCAAGTCAAAAGTTTGACAAGTCTAGTTTTTAGATATTTGGAATTCTGATGCAGATCTTCAAAAACATGCAAAAAAAAAACGTTTTGACTTCCTGGTCAGAA</canonical>
            <polymorphic>TTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAATGATTCAACATGAATTAAATGCAAATATGAAGGACTGAGGTTGAGCAAAATGTACTCAACGATCAGAAATTGTTCGTTGTATAGACTACTAGTGGTGGGCGTGATTGGGTTTTGTTTTCGATCTCTAACAGAAGACGTGCAGGAGGGMAAAACAAAAATTGTTTCCCGTGAGACACTCCGACACGTGGCCTATAGTATAGGCCTTATACTCAAATTAGATCAAATATGTGCAATCAAATTTTTTAAACAAAAGATGTTGTGAAGAAGCCAGAGAGTGTAAGATTACCAAAAAGGAATATGAAATAAGAGAACTCCGACTAGAAAAAAAAGAACGAAAGATCGCTTTTTTTTCGTGTTTTGTGTGAACTCGAGTAGAGATCAAGGAAATCGAATCTTAATCTTGTTTGCATTAATTCGGTTGGTATTTTGAACAGAAATTTGTAGAAAAAAAGAGGAGGAAGTCTGTTTCTGTAGCTTTCGAAATCAAACGGAAAGAGCATAATGCGTTTTGCAAATCGGTCTAATTAGTACACAACAACATTGTCAGCAAGTCAAAAGTTTGACAAGTCTAGTTTTTAGATATTTGGAATTCTGATGCAGATCTTCAAAAACATGCAAAAAAAAAACGTTTTGACTTCCTGGTCAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGCAAATATGAAGGACTGAG</pcr_primer_p1>
		<pcr_primer_p2>CTTCTTCACAACATCTTTTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATGCAAATATGAAGGACTGAGGTTGAGCAAAATGTACTCAACGATCAGAAATTGTTCGTTGTATAGACTACTAGTGGTGGGCGTGATTGGGTTTTGTTTTCGATCTCTAACAGAAGACGTGCAGGAGGGCAAAACAAAAATTGTTTCCCGTGAGACACTCCGACACGTGGCCTATAGTATAGGCCTTATACTCAAATTAGATCAAATATGTGCAATCAAATTTTTTAAACAAAAGATGTTGTGAAGAAG</canonical_amplicon>
		<polymorphic_amplicon>AATGCAAATATGAAGGACTGAGGTTGAGCAAAATGTACTCAACGATCAGAAATTGTTCGTTGTATAGACTACTAGTGGTGGGCGTGATTGGGTTTTGTTTTCGATCTCTAACAGAAGACGTGCAGGAGGGMAAAACAAAAATTGTTTCCCGTGAGACACTCCGACACGTGGCCTATAGTATAGGCCTTATACTCAAATTAGATCAAATATGTGCAATCAAATTTTTTAAACAAAAGATGTTGTGAAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22330</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>120216</contig_pos>
        <strand>+</strand>
        <context>YGATTCAACA[A/T]GAATTAAATG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAATGATTCAACA</left_flank>
        <right_flank>GAATTAAATGCAAATATGAAGGACTGAGGTTGAGCAAAATGTACTCAACG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACACAGGTTTTACAATATGTTGTGGTACAAATGGCATTGGACAGAACATGTTTGGTAACCCGAAAAAAAAGATAAATATAAAAGTGAGATACCATAACCACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAATGATTCAACATGAATTAAATGCAAATATGAAGGACTGAGGTTGAGCAAAATGTACTCAACGATCAGAAATTGTTCGTTGTATAGACTACTAGTGGTGGGCGTGATTGGGTTTTGTTTTCGATCTCTAACAGAAGACGTGCAGGAGGGCAAAACAAAAATTGTTTCCCGTGAGACACTCCGACACGTGGCCTATAGTATAGGCCTTATACTCAAATTAGATCAAATATGTGCAATCAAATTTTTTAAACAAAAGATGTTGTGAAGAAGCCAGAGAGTGTAAGATTACCAAAAAGGAATATGAAATAAGAGAACTCCGACTAGAAAAAAAAGAACGAAAGATCGCTTTTTTTTCGTGTTTTGTGTGAACTCGAGTAGAGATCAAGGAAATCGAATCTTAATCTTGTTTGCATTAATTCGGTTGGTATTTTGAACAGAAATTTGTAGAAAAAAAGAGGAGGAAGTCTGTTTCTGTAGCTTTCGAAATCAAACGGAAAGAGCATAATGCGTTTTG</canonical>
            <polymorphic>TACACAGGTTTTACAATATGTTGTGGTACAAATGGCATTGGACAGAACATGTTTGGTAACCCGAAAAAAAAGATAAATATAAAAGTGAGATACCATAACCACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAATGATTCAACAWGAATTAAATGCAAATATGAAGGACTGAGGTTGAGCAAAATGTACTCAACGATCAGAAATTGTTCGTTGTATAGACTACTAGTGGTGGGCGTGATTGGGTTTTGTTTTCGATCTCTAACAGAAGACGTGCAGGAGGGCAAAACAAAAATTGTTTCCCGTGAGACACTCCGACACGTGGCCTATAGTATAGGCCTTATACTCAAATTAGATCAAATATGTGCAATCAAATTTTTTAAACAAAAGATGTTGTGAAGAAGCCAGAGAGTGTAAGATTACCAAAAAGGAATATGAAATAAGAGAACTCCGACTAGAAAAAAAAGAACGAAAGATCGCTTTTTTTTCGTGTTTTGTGTGAACTCGAGTAGAGATCAAGGAAATCGAATCTTAATCTTGTTTGCATTAATTCGGTTGGTATTTTGAACAGAAATTTGTAGAAAAAAAGAGGAGGAAGTCTGTTTCTGTAGCTTTCGAAATCAAACGGAAAGAGCATAATGCGTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 228 222 48</canonical_bands>
                <polymorphic_bands>724 228 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCACCCAAATAAAATATACGAT</pcr_primer_p1>
		<pcr_primer_p2>CAATTTCTGATCGTTGAGTACA</pcr_primer_p2>
		<pcr_amplicon_size>464</pcr_amplicon_size>
		<canonical_amplicon>ACCACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAATGATTCAACATGAATTAAATGCAAATATGAAGGACTGAGGTTGAGCAAAATGTACTCAACGATCAGAAATTG</canonical_amplicon>
		<polymorphic_amplicon>ACCACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAATGATTCAACAWGAATTAAATGCAAATATGAAGGACTGAGGTTGAGCAAAATGTACTCAACGATCAGAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22331</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>120206</contig_pos>
        <strand></strand>
        <context>CTATCATCAA[T/C]GATTCAACAW</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAA</left_flank>
        <right_flank>GATTCAACATGAATTAAATGCAAATATGAAGGACTGAGGTTGAGCAAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAGGCGGGTACACAGGTTTTACAATATGTTGTGGTACAAATGGCATTGGACAGAACATGTTTGGTAACCCGAAAAAAAAGATAAATATAAAAGTGAGATACCATAACCACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAATGATTCAACATGAATTAAATGCAAATATGAAGGACTGAGGTTGAGCAAAATGTACTCAACGATCAGAAATTGTTCGTTGTATAGACTACTAGTGGTGGGCGTGATTGGGTTTTGTTTTCGATCTCTAACAGAAGACGTGCAGGAGGGCAAAACAAAAATTGTTTCCCGTGAGACACTCCGACACGTGGCCTATAGTATAGGCCTTATACTCAAATTAGATCAAATATGTGCAATCAAATTTTTTAAACAAAAGATGTTGTGAAGAAGCCAGAGAGTGTAAGATTACCAAAAAGGAATATGAAATAAGAGAACTCCGACTAGAAAAAAAAGAACGAAAGATCGCTTTTTTTTCGTGTTTTGTGTGAACTCGAGTAGAGATCAAGGAAATCGAATCTTAATCTTGTTTGCATTAATTCGGTTGGTATTTTGAACAGAAATTTGTAGAAAAAAAGAGGAGGAAGTCTGTTTCTGTAGCTTTCGAAATCAAACGGAAAGAGCATA</canonical>
            <polymorphic>TGAAGGCGGGTACACAGGTTTTACAATATGTTGTGGTACAAATGGCATTGGACAGAACATGTTTGGTAACCCGAAAAAAAAGATAAATATAAAAGTGAGATACCATAACCACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAAYGATTCAACATGAATTAAATGCAAATATGAAGGACTGAGGTTGAGCAAAATGTACTCAACGATCAGAAATTGTTCGTTGTATAGACTACTAGTGGTGGGCGTGATTGGGTTTTGTTTTCGATCTCTAACAGAAGACGTGCAGGAGGGCAAAACAAAAATTGTTTCCCGTGAGACACTCCGACACGTGGCCTATAGTATAGGCCTTATACTCAAATTAGATCAAATATGTGCAATCAAATTTTTTAAACAAAAGATGTTGTGAAGAAGCCAGAGAGTGTAAGATTACCAAAAAGGAATATGAAATAAGAGAACTCCGACTAGAAAAAAAAGAACGAAAGATCGCTTTTTTTTCGTGTTTTGTGTGAACTCGAGTAGAGATCAAGGAAATCGAATCTTAATCTTGTTTGCATTAATTCGGTTGGTATTTTGAACAGAAATTTGTAGAAAAAAAGAGGAGGAAGTCTGTTTCTGTAGCTTTCGAAATCAAACGGAAAGAGCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCCAAATAAAATATACGATCA</pcr_primer_p1>
		<pcr_primer_p2>GTACATTTTGCTCAACCTCAGT</pcr_primer_p2>
		<pcr_amplicon_size>445</pcr_amplicon_size>
		<canonical_amplicon>CACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAATGATTCAACATGAATTAAATGCAAATATGAAGGACTGAGGTTGAGCAAAATGTAC</canonical_amplicon>
		<polymorphic_amplicon>CACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAAYGATTCAACATGAATTAAATGCAAATATGAAGGACTGAGGTTGAGCAAAATGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22332</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>120136</contig_pos>
        <strand></strand>
        <context>gataattaag[T/C]gcaaTTTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAG</left_flank>
        <right_flank>GCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGGTAGTGATTCATTGTGGACGTGTCAGTCAAATTGAGTTGTAGCTTATTCATATTTGCGGACGAGTTTGAAGGCGGGTACACAGGTTTTACAATATGTTGTGGTACAAATGGCATTGGACAGAACATGTTTGGTAACCCGAAAAAAAAGATAAATATAAAAGTGAGATACCATAACCACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAATGATTCAACATGAATTAAATGCAAATATGAAGGACTGAGGTTGAGCAAAATGTACTCAACGATCAGAAATTGTTCGTTGTATAGACTACTAGTGGTGGGCGTGATTGGGTTTTGTTTTCGATCTCTAACAGAAGACGTGCAGGAGGGCAAAACAAAAATTGTTTCCCGTGAGACACTCCGACACGTGGCCTATAGTATAGGCCTTATACTCAAATTAGATCAAATATGTGCAATCAAATTTTTTAAACAAAAGATGTTGTGAAGAAGCCAGAGAGTGTAAGATTACCAAAAAGGAATATGAAATAAGAGAACTCCGACTAGAAAAAAAAGAACGAAAGATCGCTTTTTTTTCGTGTTTTGTGTGAACTCGAGTAGAGATCAAGGAAATCGAATCTTAATCTTGTTTGCATTAATTCGGTTGGTATTTTGAA</canonical>
            <polymorphic>CCAGGTAGTGATTCATTGTGGACGTGTCAGTCAAATTGAGTTGTAGCTTATTCATATTTGCGGACGAGTTTGAAGGCGGGTACACAGGTTTTACAATATGTTGTGGTACAAATGGCATTGGACAGAACATGTTTGGTAACCCGAAAAAAAAGATAAATATAAAAGTGAGATACCATAACCACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGYGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAATGATTCAACATGAATTAAATGCAAATATGAAGGACTGAGGTTGAGCAAAATGTACTCAACGATCAGAAATTGTTCGTTGTATAGACTACTAGTGGTGGGCGTGATTGGGTTTTGTTTTCGATCTCTAACAGAAGACGTGCAGGAGGGCAAAACAAAAATTGTTTCCCGTGAGACACTCCGACACGTGGCCTATAGTATAGGCCTTATACTCAAATTAGATCAAATATGTGCAATCAAATTTTTTAAACAAAAGATGTTGTGAAGAAGCCAGAGAGTGTAAGATTACCAAAAAGGAATATGAAATAAGAGAACTCCGACTAGAAAAAAAAGAACGAAAGATCGCTTTTTTTTCGTGTTTTGTGTGAACTCGAGTAGAGATCAAGGAAATCGAATCTTAATCTTGTTTGCATTAATTCGGTTGGTATTTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>501 177 118 91 89 24</canonical_bands>
                <polymorphic_bands>590 177 118 91 24</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>192 106 78 67 62 58 56 46 43 36 32 31 31 21 21 17 16 14 12 10 10 8 7 6 6 5 4 3 2</canonical_bands>
                <polymorphic_bands>248 106 78 67 62 58 46 43 36 32 31 31 21 21 17 16 14 12 10 10 8 7 6 6 5 4 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACCCAAATAAAATATACGATCA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCCTTCCTTTTTGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>CACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGYGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22333</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>255885</contig_pos>
        <strand>+</strand>
        <context>AAAGGATCAT[C/G]TTTTGGTGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCCGCATATACACCGGGTTGATAATAATCAACATTTTTCAAAAGGATCAT</left_flank>
        <right_flank>TTTTGGTGATCCTTAGGAAGAGGATCGTAGTTGTATTCCTTGAGTGGTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCACAACGGAAAATCGTCAGTATCGTTAACATCAGCAAGGCAGCTTTTGGACGGTGCAGCGAGAGCTTCAATATTCTCCTCCTCATCGATAACGATATTGGTGATTTTTGCCAATTTTGCAGGTTTAATGTCTTTGGATGAAGCGTTTCGTTTTTTGGTTGATCTCGAACTTTTTCCTCCACTGATAAGTGCTGGTTGCGCTGGTTCAGGTTTTTCTGTTGGGTTTTGATCTTCATCCTTAACTGCGTCAAAATCGATTTGCGGCTTCATGGGCTTTTGTGGAAGCTCCTCATCCTCAGCAGAATTAAAATCAAATTGCGGCTCCATCGCTTTTGATTGGAGCTTTTCATCCTCAGCAGTTTCAGAAACAATTTGTGGTTTCACTTGAATCGGGGTATAGACGCTCGTCTCGGGATTGATATAGGAGTCCAAAGAATCCAATGGCTGAGCCGCATATACACCGGGTTGATAATAATCAACATTTTTCAAAAGGATCATCTTTTGGTGATCCTTAGGAAGAGGATCGTAGTTGTATTCCTTGAGTGGTTCTAAAGGCATGGGCAGTGTGGTGAATCCTTGGTGTTGGTCATTCGACATTTTTGGTTGGTTTGTGTTTTCACTGTAAACTTGTTGTCTTAAAATCAACGAGTTTACAAGACAAAGGAACAACAAAAAAGAAAAAAGAAGAGTAAGAGATGATGTTGCTGAATGAACGAAAAAATGAATGGATTTATATCAGGAGTTTTTTTTGAAAATGGGAGGCGTATTCGTAGTGCTCTCTGAGCATCGATTTTTATCAAAAATATCAAAAAGGTCATTTTTAAAAAATTTTTACGAAAAATTACTAACATGTACGTTTCCTCAAATTTTCTCAAAAGAGTTTCTCGGAACTTATCACAAAACAAATTTCTCAAATTCCCCACATTTTCTCTAAAACATGAACTCCAATTGGCGTTAGTGACAAAGAGAGCGTAAACGCAGAAGAAAAAATAAACGACA</canonical>
            <polymorphic>ACCACAACGGAAAATCGTCAGTATCGTTAACATCAGCAAGGCAGCTTTTGGACGGTGCAGCGAGAGCTTCAATATTCTCCTCCTCATCGATAACGATATTGGTGATTTTTGCCAATTTTGCAGGTTTAATGTCTTTGGATGAAGCGTTTCGTTTTTTGGTTGATCTCGAACTTTTTCCTCCACTGATAAGTGCTGGTTGCGCTGGTTCAGGTTTTTCTGTTGGGTTTTGATCTTCATCCTTAACTGCGTCAAAATCGATTTGCGGCTTCATGGGCTTTTGTGGAAGCTCCTCATCCTCAGCAGAATTAAAATCAAATTGCGGCTCCATCGCTTTTGATTGGAGCTTTTCATCCTCAGCAGTTTCAGAAACAATTTGTGGTTTCACTTGAATCGGGGTATAGACGCTCGTCTCGGGATTGATATAGGAGTCCAAAGAATCCAATGGCTGAGCCGCATATACACCGGGTTGATAATAATCAACATTTTTCAAAAGGATCATSTTTTGGTGATCCTTAGGAAGAGGATCGTAGTTGTATTCCTTGAGTGGTTCTAAAGGCATGGGCAGTGTGGTGAATCCTTGGTGTTGGTCATTCGACATTTTTGGTTGGTTTGTGTTTTCACTGTAAACTTGTTGTCTTAAAATCAACGAGTTTACAAGACAAAGGAACAACAAAAAAGAAAAAAGAAGAGTAAGAGATGATGTTGCTGAATGAACGAAAAAATGAATGGATTTATATCAGGAGTTTTTTTTGAAAATGGGAGGCGTATTCGTAGTGCTCTCTGAGCATCGATTTTTATCAAAAATATCAAAAAGGTCATTTTTAAAAAATTTTTACGAAAAATTACTAACATGTACGTTTCCTCAAATTTTCTCAAAAGAGTTTCTCGGAACTTATCACAAAACAAATTTCTCAAATTCCCCACATTTTCTCTAAAACATGAACTCCAATTGGCGTTAGTGACAAAGAGAGCGTAAACGCAGAAGAAAAAATAAACGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGATATAGGAGTCCAAAGAATC</pcr_primer_p1>
		<pcr_primer_p2>GTTGTTCCTTTGTCTTGTAAACT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TTGATATAGGAGTCCAAAGAATCCAATGGCTGAGCCGCATATACACCGGGTTGATAATAATCAACATTTTTCAAAAGGATCATCTTTTGGTGATCCTTAGGAAGAGGATCGTAGTTGTATTCCTTGAGTGGTTCTAAAGGCATGGGCAGTGTGGTGAATCCTTGGTGTTGGTCATTCGACATTTTTGGTTGGTTTGTGTTTTCACTGTAAACTTGTTGTCTTAAAATCAACGAGTTTACAAGACAAAGGAACAAC</canonical_amplicon>
		<polymorphic_amplicon>TTGATATAGGAGTCCAAAGAATCCAATGGCTGAGCCGCATATACACCGGGTTGATAATAATCAACATTTTTCAAAAGGATCATSTTTTGGTGATCCTTAGGAAGAGGATCGTAGTTGTATTCCTTGAGTGGTTCTAAAGGCATGGGCAGTGTGGTGAATCCTTGGTGTTGGTCATTCGACATTTTTGGTTGGTTTGTGTTTTCACTGTAAACTTGTTGTCTTAAAATCAACGAGTTTACAAGACAAAGGAACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22334</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>255946</contig_pos>
        <strand>+</strand>
        <context>TAAAGGCATG[G/T]GCAGTGTGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCTTAGGAAGAGGATCGTAGTTGTATTCCTTGAGTGGTTCTAAAGGCATG</left_flank>
        <right_flank>GCAGTGTGGTGAATCCTTGGTGTTGGTCATTCGACATTTTTGGTTGGTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAGCTTCAATATTCTCCTCCTCATCGATAACGATATTGGTGATTTTTGCCAATTTTGCAGGTTTAATGTCTTTGGATGAAGCGTTTCGTTTTTTGGTTGATCTCGAACTTTTTCCTCCACTGATAAGTGCTGGTTGCGCTGGTTCAGGTTTTTCTGTTGGGTTTTGATCTTCATCCTTAACTGCGTCAAAATCGATTTGCGGCTTCATGGGCTTTTGTGGAAGCTCCTCATCCTCAGCAGAATTAAAATCAAATTGCGGCTCCATCGCTTTTGATTGGAGCTTTTCATCCTCAGCAGTTTCAGAAACAATTTGTGGTTTCACTTGAATCGGGGTATAGACGCTCGTCTCGGGATTGATATAGGAGTCCAAAGAATCCAATGGCTGAGCCGCATATACACCGGGTTGATAATAATCAACATTTTTCAAAAGGATCATCTTTTGGTGATCCTTAGGAAGAGGATCGTAGTTGTATTCCTTGAGTGGTTCTAAAGGCATGGGCAGTGTGGTGAATCCTTGGTGTTGGTCATTCGACATTTTTGGTTGGTTTGTGTTTTCACTGTAAACTTGTTGTCTTAAAATCAACGAGTTTACAAGACAAAGGAACAACAAAAAAGAAAAAAGAAGAGTAAGAGATGATGTTGCTGAATGAACGAAAAAATGAATGGATTTATATCAGGAGTTTTTTTTGAAAATGGGAGGCGTATTCGTAGTGCTCTCTGAGCATCGATTTTTATCAAAAATATCAAAAAGGTCATTTTTAAAAAATTTTTACGAAAAATTACTAACATGTACGTTTCCTCAAATTTTCTCAAAAGAGTTTCTCGGAACTTATCACAAAACAAATTTCTCAAATTCCCCACATTTTCTCTAAAACATGAACTCCAATTGGCGTTAGTGACAAAGAGAGCGTAAACGCAGAAGAAAAAATAAACGACAAAAAATCTAGAAATTAAAGAGTTGGCATTTAGTATGTTCAGAAATTTGAATAATTGAGCAA</canonical>
            <polymorphic>GAGAGCTTCAATATTCTCCTCCTCATCGATAACGATATTGGTGATTTTTGCCAATTTTGCAGGTTTAATGTCTTTGGATGAAGCGTTTCGTTTTTTGGTTGATCTCGAACTTTTTCCTCCACTGATAAGTGCTGGTTGCGCTGGTTCAGGTTTTTCTGTTGGGTTTTGATCTTCATCCTTAACTGCGTCAAAATCGATTTGCGGCTTCATGGGCTTTTGTGGAAGCTCCTCATCCTCAGCAGAATTAAAATCAAATTGCGGCTCCATCGCTTTTGATTGGAGCTTTTCATCCTCAGCAGTTTCAGAAACAATTTGTGGTTTCACTTGAATCGGGGTATAGACGCTCGTCTCGGGATTGATATAGGAGTCCAAAGAATCCAATGGCTGAGCCGCATATACACCGGGTTGATAATAATCAACATTTTTCAAAAGGATCATCTTTTGGTGATCCTTAGGAAGAGGATCGTAGTTGTATTCCTTGAGTGGTTCTAAAGGCATGKGCAGTGTGGTGAATCCTTGGTGTTGGTCATTCGACATTTTTGGTTGGTTTGTGTTTTCACTGTAAACTTGTTGTCTTAAAATCAACGAGTTTACAAGACAAAGGAACAACAAAAAAGAAAAAAGAAGAGTAAGAGATGATGTTGCTGAATGAACGAAAAAATGAATGGATTTATATCAGGAGTTTTTTTTGAAAATGGGAGGCGTATTCGTAGTGCTCTCTGAGCATCGATTTTTATCAAAAATATCAAAAAGGTCATTTTTAAAAAATTTTTACGAAAAATTACTAACATGTACGTTTCCTCAAATTTTCTCAAAAGAGTTTCTCGGAACTTATCACAAAACAAATTTCTCAAATTCCCCACATTTTCTCTAAAACATGAACTCCAATTGGCGTTAGTGACAAAGAGAGCGTAAACGCAGAAGAAAAAATAAACGACAAAAAATCTAGAAATTAAAGAGTTGGCATTTAGTATGTTCAGAAATTTGAATAATTGAGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATATACACCGGGTTGATAATAA</pcr_primer_p1>
		<pcr_primer_p2>GCAACATCATCTCTTACTCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CATATACACCGGGTTGATAATAATCAACATTTTTCAAAAGGATCATCTTTTGGTGATCCTTAGGAAGAGGATCGTAGTTGTATTCCTTGAGTGGTTCTAAAGGCATGGGCAGTGTGGTGAATCCTTGGTGTTGGTCATTCGACATTTTTGGTTGGTTTGTGTTTTCACTGTAAACTTGTTGTCTTAAAATCAACGAGTTTACAAGACAAAGGAACAACAAAAAAGAAAAAAGAAGAGTAAGAGATGATGTTGC</canonical_amplicon>
		<polymorphic_amplicon>CATATACACCGGGTTGATAATAATCAACATTTTTCAAAAGGATCATCTTTTGGTGATCCTTAGGAAGAGGATCGTAGTTGTATTCCTTGAGTGGTTCTAAAGGCATGKGCAGTGTGGTGAATCCTTGGTGTTGGTCATTCGACATTTTTGGTTGGTTTGTGTTTTCACTGTAAACTTGTTGTCTTAAAATCAACGAGTTTACAAGACAAAGGAACAACAAAAAAGAAAAAAGAAGAGTAAGAGATGATGTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22335</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>256033</contig_pos>
        <strand>+</strand>
        <context>TAAAATCAAC[G/T]AGTTTACAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTTGGTTGGTTTGTGTTTTCACTGTAAACTTGTTGTCTTAAAATCAAC</left_flank>
        <right_flank>AGTTTACAAGACAAAGGAACAACAAAAAAGAAAAAAGAAGAGTAAGAGAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTTTTTTGGTTGATCTCGAACTTTTTCCTCCACTGATAAGTGCTGGTTGCGCTGGTTCAGGTTTTTCTGTTGGGTTTTGATCTTCATCCTTAACTGCGTCAAAATCGATTTGCGGCTTCATGGGCTTTTGTGGAAGCTCCTCATCCTCAGCAGAATTAAAATCAAATTGCGGCTCCATCGCTTTTGATTGGAGCTTTTCATCCTCAGCAGTTTCAGAAACAATTTGTGGTTTCACTTGAATCGGGGTATAGACGCTCGTCTCGGGATTGATATAGGAGTCCAAAGAATCCAATGGCTGAGCCGCATATACACCGGGTTGATAATAATCAACATTTTTCAAAAGGATCATCTTTTGGTGATCCTTAGGAAGAGGATCGTAGTTGTATTCCTTGAGTGGTTCTAAAGGCATGGGCAGTGTGGTGAATCCTTGGTGTTGGTCATTCGACATTTTTGGTTGGTTTGTGTTTTCACTGTAAACTTGTTGTCTTAAAATCAACGAGTTTACAAGACAAAGGAACAACAAAAAAGAAAAAAGAAGAGTAAGAGATGATGTTGCTGAATGAACGAAAAAATGAATGGATTTATATCAGGAGTTTTTTTTGAAAATGGGAGGCGTATTCGTAGTGCTCTCTGAGCATCGATTTTTATCAAAAATATCAAAAAGGTCATTTTTAAAAAATTTTTACGAAAAATTACTAACATGTACGTTTCCTCAAATTTTCTCAAAAGAGTTTCTCGGAACTTATCACAAAACAAATTTCTCAAATTCCCCACATTTTCTCTAAAACATGAACTCCAATTGGCGTTAGTGACAAAGAGAGCGTAAACGCAGAAGAAAAAATAAACGACAAAAAATCTAGAAATTAAAGAGTTGGCATTTAGTATGTTCAGAAATTTGAATAATTGAGCAAAACGTGAATTATAAAAAAACATAGAATTGGTTGTATGGAGATGGAAAAAGTTTGAAATGGACCCCATTAAAATTTTTTTATGAAATC</canonical>
            <polymorphic>TCGTTTTTTGGTTGATCTCGAACTTTTTCCTCCACTGATAAGTGCTGGTTGCGCTGGTTCAGGTTTTTCTGTTGGGTTTTGATCTTCATCCTTAACTGCGTCAAAATCGATTTGCGGCTTCATGGGCTTTTGTGGAAGCTCCTCATCCTCAGCAGAATTAAAATCAAATTGCGGCTCCATCGCTTTTGATTGGAGCTTTTCATCCTCAGCAGTTTCAGAAACAATTTGTGGTTTCACTTGAATCGGGGTATAGACGCTCGTCTCGGGATTGATATAGGAGTCCAAAGAATCCAATGGCTGAGCCGCATATACACCGGGTTGATAATAATCAACATTTTTCAAAAGGATCATCTTTTGGTGATCCTTAGGAAGAGGATCGTAGTTGTATTCCTTGAGTGGTTCTAAAGGCATGGGCAGTGTGGTGAATCCTTGGTGTTGGTCATTCGACATTTTTGGTTGGTTTGTGTTTTCACTGTAAACTTGTTGTCTTAAAATCAACKAGTTTACAAGACAAAGGAACAACAAAAAAGAAAAAAGAAGAGTAAGAGATGATGTTGCTGAATGAACGAAAAAATGAATGGATTTATATCAGGAGTTTTTTTTGAAAATGGGAGGCGTATTCGTAGTGCTCTCTGAGCATCGATTTTTATCAAAAATATCAAAAAGGTCATTTTTAAAAAATTTTTACGAAAAATTACTAACATGTACGTTTCCTCAAATTTTCTCAAAAGAGTTTCTCGGAACTTATCACAAAACAAATTTCTCAAATTCCCCACATTTTCTCTAAAACATGAACTCCAATTGGCGTTAGTGACAAAGAGAGCGTAAACGCAGAAGAAAAAATAAACGACAAAAAATCTAGAAATTAAAGAGTTGGCATTTAGTATGTTCAGAAATTTGAATAATTGAGCAAAACGTGAATTATAAAAAAACATAGAATTGGTTGTATGGAGATGGAAAAAGTTTGAAATGGACCCCATTAAAATTTTTTTATGAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATATACACCGGGTTGATAATAA</pcr_primer_p1>
		<pcr_primer_p2>GCAACATCATCTCTTACTCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CATATACACCGGGTTGATAATAATCAACATTTTTCAAAAGGATCATCTTTTGGTGATCCTTAGGAAGAGGATCGTAGTTGTATTCCTTGAGTGGTTCTAAAGGCATGGGCAGTGTGGTGAATCCTTGGTGTTGGTCATTCGACATTTTTGGTTGGTTTGTGTTTTCACTGTAAACTTGTTGTCTTAAAATCAACGAGTTTACAAGACAAAGGAACAACAAAAAAGAAAAAAGAAGAGTAAGAGATGATGTTGC</canonical_amplicon>
		<polymorphic_amplicon>CATATACACCGGGTTGATAATAATCAACATTTTTCAAAAGGATCATCTTTTGGTGATCCTTAGGAAGAGGATCGTAGTTGTATTCCTTGAGTGGTTCTAAAGGCATGGGCAGTGTGGTGAATCCTTGGTGTTGGTCATTCGACATTTTTGGTTGGTTTGTGTTTTCACTGTAAACTTGTTGTCTTAAAATCAACKAGTTTACAAGACAAAGGAACAACAAAAAAGAAAAAAGAAGAGTAAGAGATGATGTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22337</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>271541</contig_pos>
        <strand>+</strand>
        <context>TCTAGAATAT[G/T]ACAAAGACTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGGACCAGAAGAGGCGGTGCTTATTCAAAAGTAATCGTTTTCTAGAATAT</left_flank>
        <right_flank>ACAAAGACTTTGCTCCGCCCTTTTGATTCTGTGTCTACCGACTGTTTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAAAGTCTAACACGGGTATATTTGTTATCATTCCTTTTGTGTCAAATAGCAGAATAAATGTCAGGTAAACGACCTGTGCTGGATCTGTTCTTGTGATATTTTTACGCTGTGAAAAATATCACGAAAGAAAGAGGCAGCACAGGTCGACTGGTAACCTGACCATTCATGATAGGAATATTTAGCAGAATAGCATTTTACAGTAGGATTGTTGGGTCCCAGTGGACCTGCGCTCAATCTTTGCTGTGATATTTTCGAGCTCTAGAAAATCTCAGAAAACAAAGATCAAGGGCAGGTCGTACTGAGATCGGTCCAATATCTGTTGGAATACAAGGTAGATGCACAGGCAATAAATTCGGATTGTTGGGTGATTCATGACTTGATCCAATCTAGTGGATGAAAAACACAAGGCAGAAATAATGAAATGGCCGTTGAAACCCAGTTTTTATATGGACCAGAAGAGGCGGTGCTTATTCAAAAGTAATCGTTTTCTAGAATATGACAAAGACTTTGCTCCGCCCTTTTGATTCTGTGTCTACCGACTGTTTTTTACGGATTCCAAAAAATATACAATTTAATATAGATGTTCGAATTCATTGAATCGGTGTATACCGTATTTCCTCTAATAGAAGTCAACTCAAATTTTGACTTTGAGCTCAATTATCTTGGTTCTCGGGAAAAGATGTCAAAAGTGGTCAACTGATAAAATGTTGATCATGCTATTGACAGTGTTTTGTCAGTTGACAGATTTTTTATCTTCTCTACATGAATCGAAATAATTGAGCTCTATTAGAGGAAATATGGTATCTCAAATGTAACACTTTTAGGTATTGGGATTTGAGACCATATATGTAATAGAAAAATTTTAATTTCTTCGGTCACTCTTTTGCTTTTCATACGAAGTTTCTGAAAATGGGAATTCAGAGTTTCGAAAGTTAGATTACTGTAGCTAGCAAAACAATTTGTTGGAATGCAAAAATATCCGGATTTCATTCTATCTA</canonical>
            <polymorphic>AGAAAAGTCTAACACGGGTATATTTGTTATCATTCCTTTTGTGTCAAATAGCAGAATAAATGTCAGGTAAACGACCTGTGCTGGATCTGTTCTTGTGATATTTTTACGCTGTGAAAAATATCACGAAAGAAAGAGGCAGCACAGGTCGACTGGTAACCTGACCATTCATGATAGGAATATTTAGCAGAATAGCATTTTACAGTAGGATTGTTGGGTCCCAGTGGACCTGCGCTCAATCTTTGCTGTGATATTTTCGAGCTCTAGAAAATCTCAGAAAACAAAGATCAAGGGCAGGTCGTACTGAGATCGGTCCAATATCTGTTGGAATACAAGGTAGATGCACAGGCAATAAATTCGGATTGTTGGGTGATTCATGACTTGATCCAATCTAGTGGATGAAAAACACAAGGCAGAAATAATGAAATGGCCGTTGAAACCCAGTTTTTATATGGACCAGAAGAGGCGGTGCTTATTCAAAAGTAATCGTTTTCTAGAATATKACAAAGACTTTGCTCCGCCCTTTTGATTCTGTGTCTACCGACTGTTTTTTACGGATTCCAAAAAATATACAATTTAATATAGATGTTCGAATTCATTGAATCGGTGTATACCGTATTTCCTCTAATAGAAGTCAACTCAAATTTTGACTTTGAGCTCAATTATCTTGGTTCTCGGGAAAAGATGTCAAAAGTGGTCAACTGATAAAATGTTGATCATGCTATTGACAGTGTTTTGTCAGTTGACAGATTTTTTATCTTCTCTACATGAATCGAAATAATTGAGCTCTATTAGAGGAAATATGGTATCTCAAATGTAACACTTTTAGGTATTGGGATTTGAGACCATATATGTAATAGAAAAATTTTAATTTCTTCGGTCACTCTTTTGCTTTTCATACGAAGTTTCTGAAAATGGGAATTCAGAGTTTCGAAAGTTAGATTACTGTAGCTAGCAAAACAATTTGTTGGAATGCAAAAATATCCGGATTTCATTCTATCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGGGTGATTCATGACTTG</pcr_primer_p1>
		<pcr_primer_p2>TCAATGAATTCGAACATCTATATTA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>GTTGGGTGATTCATGACTTGATCCAATCTAGTGGATGAAAAACACAAGGCAGAAATAATGAAATGGCCGTTGAAACCCAGTTTTTATATGGACCAGAAGAGGCGGTGCTTATTCAAAAGTAATCGTTTTCTAGAATATGACAAAGACTTTGCTCCGCCCTTTTGATTCTGTGTCTACCGACTGTTTTTTACGGATTCCAAAAAATATACAATTTAATATAGATGTTCGAATTCATTGA</canonical_amplicon>
		<polymorphic_amplicon>GTTGGGTGATTCATGACTTGATCCAATCTAGTGGATGAAAAACACAAGGCAGAAATAATGAAATGGCCGTTGAAACCCAGTTTTTATATGGACCAGAAGAGGCGGTGCTTATTCAAAAGTAATCGTTTTCTAGAATATKACAAAGACTTTGCTCCGCCCTTTTGATTCTGTGTCTACCGACTGTTTTTTACGGATTCCAAAAAATATACAATTTAATATAGATGTTCGAATTCATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22338</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>361322</contig_pos>
        <strand>+</strand>
        <context>CAAACATAGG[G/T]ATTTTAAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCATACTAGAAAAGAGAAGGAACAGTCCAGAGTTATTGCAAACATAGG</left_flank>
        <right_flank>ATTTTAAAGAACAAAGAGAAAAAATATATCTAAAAGCAATCAGTTTCAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAAATGATAATTCTGATAAAAAAAATAAATGTGGAAGTGGAAAGCTATTTTCTGAATCGAAAAGAAAGCTATTTTCTGAATCGAAAATTAAAGTTTTTGCTAACTTTGGTAACTCGGCCATGGCAACTAGACTTGCTCTTCCACAACTCTAATTTTCACATACCATAAATATGTTTGAAATGATAAATATTTTTTGAGAAAATCACATGATTCCCAAAGTTGGCGAAATTTGTGTAAAATTTGAAAAATATGATCACTGTCGACAAAAGTAGATTTTCCGTATTGATGAGATGATTGGAAAAATGGGAGTTGTGAGTTAAATATGGTTAAACCTGGTTCCGGAGAGGCAAAGGATGGGTACGGTATATCGCCATATCGTCCCAAACTCAAAACAGTGTTCGAAAAAGGTTAACCTATACTGACCTTATAAGGCTCCAAATATATAATTTCATACTAGAAAAGAGAAGGAACAGTCCAGAGTTATTGCAAACATAGGGATTTTAAAGAACAAAGAGAAAAAATATATCTAAAAGCAATCAGTTTCAACTCACGCCTCGTTCAGGAAGTTTGAAGCTTGCTCCTAGCTAATGCTACTGTCGTAGAATACAGAATGACCACCCCCTCCGAGAAAAGGACGAGCAGAGAAGAATCTATTGTGGCGATGGACTTATAAGTGTGAGAGGCACGTTGACACCACATCGGAAGGGAAGGAGCACACTCTTCTCCTCGCCTCCTGTATCTACGTCAGAGGGCAATAAGCGAGGAATAATCGGGATTGCGCAACTGACCAGTTGGACCAACACGCGGAGATTACGGTATTCCTTTTCTGTTCATTTATCATAAACGGATCTAACCTCCTTTATTCCATAACTTGACAGCCGAAAAACTGGGAAAATGAAATTCTGCAAACCCAGTTTCAAATTTGAATATTTCTGCTTTGCACCAGTACGCATTTGTCAGTAGAGCGCGTTTGCTTAAAGACGCGAGTTCAGCCATT</canonical>
            <polymorphic>TTTCAAATGATAATTCTGATAAAAAAAATAAATGTGGAAGTGGAAAGCTATTTTCTGAATCGAAAAGAAAGCTATTTTCTGAATCGAAAATTAAAGTTTTTGCTAACTTTGGTAACTCGGCCATGGCAACTAGACTTGCTCTTCCACAACTCTAATTTTCACATACCATAAATATGTTTGAAATGATAAATATTTTTTGAGAAAATCACATGATTCCCAAAGTTGGCGAAATTTGTGTAAAATTTGAAAAATATGATCACTGTCGACAAAAGTAGATTTTCCGTATTGATGAGATGATTGGAAAAATGGGAGTTGTGAGTTAAATATGGTTAAACCTGGTTCCGGAGAGGCAAAGGATGGGTACGGTATATCGCCATATCGTCCCAAACTCAAAACAGTGTTCGAAAAAGGTTAACCTATACTGACCTTATAAGGCTCCAAATATATAATTTCATACTAGAAAAGAGAAGGAACAGTCCAGAGTTATTGCAAACATAGGKATTTTAAAGAACAAAGAGAAAAAATATATCTAAAAGCAATCAGTTTCAACTCACGCCTCGTTCAGGAAGTTTGAAGCTTGCTCCTAGCTAATGCTACTGTCGTAGAATACAGAATGACCACCCCCTCCGAGAAAAGGACGAGCAGAGAAGAATCTATTGTGGCGATGGACTTATAAGTGTGAGAGGCACGTTGACACCACATCGGAAGGGAAGGAGCACACTCTTCTCCTCGCCTCCTGTATCTACGTCAGAGGGCAATAAGCGAGGAATAATCGGGATTGCGCAACTGACCAGTTGGACCAACACGCGGAGATTACGGTATTCCTTTTCTGTTCATTTATCATAAACGGATCTAACCTCCTTTATTCCATAACTTGACAGCCGAAAAACTGGGAAAATGAAATTCTGCAAACCCAGTTTCAAATTTGAATATTTCTGCTTTGCACCAGTACGCATTTGTCAGTAGAGCGCGTTTGCTTAAAGACGCGAGTTCAGCCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATCGTCCCAAACTCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GTGGTCATTCTGTATTCTACGAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATATCGTCCCAAACTCAAAACAGTGTTCGAAAAAGGTTAACCTATACTGACCTTATAAGGCTCCAAATATATAATTTCATACTAGAAAAGAGAAGGAACAGTCCAGAGTTATTGCAAACATAGGGATTTTAAAGAACAAAGAGAAAAAATATATCTAAAAGCAATCAGTTTCAACTCACGCCTCGTTCAGGAAGTTTGAAGCTTGCTCCTAGCTAATGCTACTGTCGTAGAATACAGAATGACCAC</canonical_amplicon>
		<polymorphic_amplicon>ATATCGTCCCAAACTCAAAACAGTGTTCGAAAAAGGTTAACCTATACTGACCTTATAAGGCTCCAAATATATAATTTCATACTAGAAAAGAGAAGGAACAGTCCAGAGTTATTGCAAACATAGGKATTTTAAAGAACAAAGAGAAAAAATATATCTAAAAGCAATCAGTTTCAACTCACGCCTCGTTCAGGAAGTTTGAAGCTTGCTCCTAGCTAATGCTACTGTCGTAGAATACAGAATGACCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22339</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>361378</contig_pos>
        <strand>+</strand>
        <context>TCAACTCACG[A/C]CTCGTTCAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAGAACAAAGAGAAAAAATATATCTAAAAGCAATCAGTTTCAACTCACG</left_flank>
        <right_flank>CTCGTTCAGGAAGTTTGAAGCTTGCTCCTAGCTAATGCTACTGTCGTAGA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATCGAAAAGAAAGCTATTTTCTGAATCGAAAATTAAAGTTTTTGCTAACTTTGGTAACTCGGCCATGGCAACTAGACTTGCTCTTCCACAACTCTAATTTTCACATACCATAAATATGTTTGAAATGATAAATATTTTTTGAGAAAATCACATGATTCCCAAAGTTGGCGAAATTTGTGTAAAATTTGAAAAATATGATCACTGTCGACAAAAGTAGATTTTCCGTATTGATGAGATGATTGGAAAAATGGGAGTTGTGAGTTAAATATGGTTAAACCTGGTTCCGGAGAGGCAAAGGATGGGTACGGTATATCGCCATATCGTCCCAAACTCAAAACAGTGTTCGAAAAAGGTTAACCTATACTGACCTTATAAGGCTCCAAATATATAATTTCATACTAGAAAAGAGAAGGAACAGTCCAGAGTTATTGCAAACATAGGGATTTTAAAGAACAAAGAGAAAAAATATATCTAAAAGCAATCAGTTTCAACTCACGCCTCGTTCAGGAAGTTTGAAGCTTGCTCCTAGCTAATGCTACTGTCGTAGAATACAGAATGACCACCCCCTCCGAGAAAAGGACGAGCAGAGAAGAATCTATTGTGGCGATGGACTTATAAGTGTGAGAGGCACGTTGACACCACATCGGAAGGGAAGGAGCACACTCTTCTCCTCGCCTCCTGTATCTACGTCAGAGGGCAATAAGCGAGGAATAATCGGGATTGCGCAACTGACCAGTTGGACCAACACGCGGAGATTACGGTATTCCTTTTCTGTTCATTTATCATAAACGGATCTAACCTCCTTTATTCCATAACTTGACAGCCGAAAAACTGGGAAAATGAAATTCTGCAAACCCAGTTTCAAATTTGAATATTTCTGCTTTGCACCAGTACGCATTTGTCAGTAGAGCGCGTTTGCTTAAAGACGCGAGTTCAGCCATTCAGCTCATGTGCATGTATAGAGATCCCCATCAATTTTTTAGGAAGAAGAGAGGGGA</canonical>
            <polymorphic>GAATCGAAAAGAAAGCTATTTTCTGAATCGAAAATTAAAGTTTTTGCTAACTTTGGTAACTCGGCCATGGCAACTAGACTTGCTCTTCCACAACTCTAATTTTCACATACCATAAATATGTTTGAAATGATAAATATTTTTTGAGAAAATCACATGATTCCCAAAGTTGGCGAAATTTGTGTAAAATTTGAAAAATATGATCACTGTCGACAAAAGTAGATTTTCCGTATTGATGAGATGATTGGAAAAATGGGAGTTGTGAGTTAAATATGGTTAAACCTGGTTCCGGAGAGGCAAAGGATGGGTACGGTATATCGCCATATCGTCCCAAACTCAAAACAGTGTTCGAAAAAGGTTAACCTATACTGACCTTATAAGGCTCCAAATATATAATTTCATACTAGAAAAGAGAAGGAACAGTCCAGAGTTATTGCAAACATAGGGATTTTAAAGAACAAAGAGAAAAAATATATCTAAAAGCAATCAGTTTCAACTCACGMCTCGTTCAGGAAGTTTGAAGCTTGCTCCTAGCTAATGCTACTGTCGTAGAATACAGAATGACCACCCCCTCCGAGAAAAGGACGAGCAGAGAAGAATCTATTGTGGCGATGGACTTATAAGTGTGAGAGGCACGTTGACACCACATCGGAAGGGAAGGAGCACACTCTTCTCCTCGCCTCCTGTATCTACGTCAGAGGGCAATAAGCGAGGAATAATCGGGATTGCGCAACTGACCAGTTGGACCAACACGCGGAGATTACGGTATTCCTTTTCTGTTCATTTATCATAAACGGATCTAACCTCCTTTATTCCATAACTTGACAGCCGAAAAACTGGGAAAATGAAATTCTGCAAACCCAGTTTCAAATTTGAATATTTCTGCTTTGCACCAGTACGCATTTGTCAGTAGAGCGCGTTTGCTTAAAGACGCGAGTTCAGCCATTCAGCTCATGTGCATGTATAGAGATCCCCATCAATTTTTTAGGAAGAAGAGAGGGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>250 221 173 166 119 71</canonical_bands>
                <polymorphic_bands>292 250 173 166 119</polymorphic_bands>
            </assay>
            <assay>
                <site>CCTNNNNNAGG</site>
                <isoschizomers>
                    <enzyme>BstENI</enzyme>
                    <enzyme>EcoNI</enzyme>
                    <enzyme>XagI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATCGTCCCAAACTCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GTGGTCATTCTGTATTCTACGAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATATCGTCCCAAACTCAAAACAGTGTTCGAAAAAGGTTAACCTATACTGACCTTATAAGGCTCCAAATATATAATTTCATACTAGAAAAGAGAAGGAACAGTCCAGAGTTATTGCAAACATAGGGATTTTAAAGAACAAAGAGAAAAAATATATCTAAAAGCAATCAGTTTCAACTCACGCCTCGTTCAGGAAGTTTGAAGCTTGCTCCTAGCTAATGCTACTGTCGTAGAATACAGAATGACCAC</canonical_amplicon>
		<polymorphic_amplicon>ATATCGTCCCAAACTCAAAACAGTGTTCGAAAAAGGTTAACCTATACTGACCTTATAAGGCTCCAAATATATAATTTCATACTAGAAAAGAGAAGGAACAGTCCAGAGTTATTGCAAACATAGGGATTTTAAAGAACAAAGAGAAAAAATATATCTAAAAGCAATCAGTTTCAACTCACGMCTCGTTCAGGAAGTTTGAAGCTTGCTCCTAGCTAATGCTACTGTCGTAGAATACAGAATGACCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22344</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>420433</contig_pos>
        <strand></strand>
        <context>CTGGAGTGCT[T/C]TTCCACCACC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTCATTAATCTGTCATGTCTTCTGCCATCTCTTTTTTTTCTGGAGTGCT</left_flank>
        <right_flank>TTCCACCACCTTGTTACTCTCTACACTCTTATTCGCATTCAACCCCCCCC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGACTTTCGCTTCGCTCAAAAAAATACCGATGGCTTCTTCGAACGTGCGTTACAGCATTATTTTGATTCCAAGATGAAAAGTAATGTCTGACAATTTTGTATCGAATGCAACTGAAAGAAAAAATAGATCGACATAGGGTGAGACACTGTATTGTAATCACATTCATAGAAATGCGGGCTTCTCCACATAATCAGATAATTTTTGCCTAATTTTTTAATGATAAATCTCATGAATTTCTTCCAGACTCGAGAAAAATTGTCTGCCGGGTCTTTTCTATTATCCAGACAGACTATTATGTAAGACGTCAATGGTAACTTGAAAACAACACCCTGAATTTCAGCCCAAGAGCGATTTTTTGGTTTGTCTGATTACTAACTAATTACGGTTCTAAATGTCTAAATTAGAATTGAAACACAGCACTTATCAATACTCATCGCACGCAAGTGTATTCATTAATCTGTCATGTCTTCTGCCATCTCTTTTTTTTCTGGAGTGCTTTTCCACCACCTTGTTACTCTCTACACTCTTATTCGCATTCAACCCCCCCCCCCCCCTTCCTGCATTAGATACGCGTTTTCCACTCGAGACCCATATTTATTGATTGGCCAGTCAATATTAACTGTCTTTACTAACCTCTAGACAATCTATTGTCTCATTTTTTATTTCATCCAGCTTGTCGTACACTATCTTCTCTCACATTCTCTATAACAGTTATTCTTGTCGATTGATTTATTCCTTCTATTAAATATGAACGGACCGAAATTTCCTCTCCACCGCTTACCCAAAGATCTTTGTTCGGAAGTACTCAGAACTATGGACCTCTATGAAATGTGAGTTTATTTTCTTAAAACGGATTCTCTGCCTGAACTAAAAATAGTGTTGTGCAGGAAAATTCAAACTATTTTTTATGCATTGTTGTTTTATATGTTGAAGGCCGAGGCAACGTTAATGTAAAAAATGTACATGATGATAAGACTCTTCCGGTAATAGTGTTGTGC</canonical>
            <polymorphic>ATGACTTTCGCTTCGCTCAAAAAAATACCGATGGCTTCTTCGAACGTGCGTTACAGCATTATTTTGATTCCAAGATGAAAAGTAATGTCTGACAATTTTGTATCGAATGCAACTGAAAGAAAAAATAGATCGACATAGGGTGAGACACTGTATTGTAATCACATTCATAGAAATGCGGGCTTCTCCACATAATCAGATAATTTTTGCCTAATTTTTTAATGATAAATCTCATGAATTTCTTCCAGACTCGAGAAAAATTGTCTGCCGGGTCTTTTCTATTATCCAGACAGACTATTATGTAAGACGTCAATGGTAACTTGAAAACAACACCCTGAATTTCAGCCCAAGAGCGATTTTTTGGTTTGTCTGATTACTAACTAATTACGGTTCTAAATGTCTAAATTAGAATTGAAACACAGCACTTATCAATACTCATCGCACGCAAGTGTATTCATTAATCTGTCATGTCTTCTGCCATCTCTTTTTTTTCTGGAGTGCTYTTCCACCACCTTGTTACTCTCTACACTCTTATTCGCATTCAACCCCCCCCCCCCCCTTCCTGCATTAGATACGCGTTTTCCACTCGAGACCCATATTTATTGATTGGCCAGTCAATATTAACTGTCTTTACTAACCTCTAGACAATCTATTGTCTCATTTTTTATTTCATCCAGCTTGTCGTACACTATCTTCTCTCACATTCTCTATAACAGTTATTCTTGTCGATTGATTTATTCCTTCTATTAAATATGAACGGACCGAAATTTCCTCTCCACCGCTTACCCAAAGATCTTTGTTCGGAAGTACTCAGAACTATGGACCTCTATGAAATGTGAGTTTATTTTCTTAAAACGGATTCTCTGCCTGAACTAAAAATAGTGTTGTGCAGGAAAATTCAAACTATTTTTTATGCATTGTTGTTTTATATGTTGAAGGCCGAGGCAACGTTAATGTAAAAAATGTACATGATGATAAGACTCTTCCGGTAATAGTGTTGTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCAAGTGTATTCATTAATCTGT</pcr_primer_p1>
		<pcr_primer_p2>TGAGAGAAGATAGTGTACGACAAG</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>CGCAAGTGTATTCATTAATCTGTCATGTCTTCTGCCATCTCTTTTTTTTCTGGAGTGCTTTTCCACCACCTTGTTACTCTCTACACTCTTATTCGCATTCAACCCCCCCCCCCCCCTTCCTGCATTAGATACGCGTTTTCCACTCGAGACCCATATTTATTGATTGGCCAGTCAATATTAACTGTCTTTACTAACCTCTAGACAATCTATTGTCTCATTTTTTATTTCATCCAGCTTGTCGTACACTATCTTCTCTCA</canonical_amplicon>
		<polymorphic_amplicon>CGCAAGTGTATTCATTAATCTGTCATGTCTTCTGCCATCTCTTTTTTTTCTGGAGTGCTYTTCCACCACCTTGTTACTCTCTACACTCTTATTCGCATTCAACCCCCCCCCCCCCCTTCCTGCATTAGATACGCGTTTTCCACTCGAGACCCATATTTATTGATTGGCCAGTCAATATTAACTGTCTTTACTAACCTCTAGACAATCTATTGTCTCATTTTTTATTTCATCCAGCTTGTCGTACACTATCTTCTCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22345</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>420637</contig_pos>
        <strand>+</strand>
        <context>TCTCACATTC[G/T]CTATAACAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCATTTTTTATTTCATCCAGCTTGTCGTACACTATCTTCTCTCACATTC</left_flank>
        <right_flank>CTATAACAGTTATTCTTGTCGATTGATTTATTCCTTCTATTAAATATGAA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCCTAATTTTTTAATGATAAATCTCATGAATTTCTTCCAGACTCGAGAAAAATTGTCTGCCGGGTCTTTTCTATTATCCAGACAGACTATTATGTAAGACGTCAATGGTAACTTGAAAACAACACCCTGAATTTCAGCCCAAGAGCGATTTTTTGGTTTGTCTGATTACTAACTAATTACGGTTCTAAATGTCTAAATTAGAATTGAAACACAGCACTTATCAATACTCATCGCACGCAAGTGTATTCATTAATCTGTCATGTCTTCTGCCATCTCTTTTTTTTCTGGAGTGCTTTTCCACCACCTTGTTACTCTCTACACTCTTATTCGCATTCAACCCCCCCCCCCCCCTTCCTGCATTAGATACGCGTTTTCCACTCGAGACCCATATTTATTGATTGGCCAGTCAATATTAACTGTCTTTACTAACCTCTAGACAATCTATTGTCTCATTTTTTATTTCATCCAGCTTGTCGTACACTATCTTCTCTCACATTCTCTATAACAGTTATTCTTGTCGATTGATTTATTCCTTCTATTAAATATGAACGGACCGAAATTTCCTCTCCACCGCTTACCCAAAGATCTTTGTTCGGAAGTACTCAGAACTATGGACCTCTATGAAATGTGAGTTTATTTTCTTAAAACGGATTCTCTGCCTGAACTAAAAATAGTGTTGTGCAGGAAAATTCAAACTATTTTTTATGCATTGTTGTTTTATATGTTGAAGGCCGAGGCAACGTTAATGTAAAAAATGTACATGATGATAAGACTCTTCCGGTAATAGTGTTGTGCAGACAAATTCCAACCAGGTTTTACGCATTGAGATTTGACCGAAACTGAAGACCGAAACCACCTTGAGATTAAAAAAAGAATATTTGGATCGGACCCACCCGGTACTGTCCAAACCGTGACCAATTTTAGTCAAAAACCGAAAACGTTTTTTGATGGTGATAGTAATTAGATTGGACCTGGAAGGACTAATTAAAAAAATCACAA</canonical>
            <polymorphic>TGCCTAATTTTTTAATGATAAATCTCATGAATTTCTTCCAGACTCGAGAAAAATTGTCTGCCGGGTCTTTTCTATTATCCAGACAGACTATTATGTAAGACGTCAATGGTAACTTGAAAACAACACCCTGAATTTCAGCCCAAGAGCGATTTTTTGGTTTGTCTGATTACTAACTAATTACGGTTCTAAATGTCTAAATTAGAATTGAAACACAGCACTTATCAATACTCATCGCACGCAAGTGTATTCATTAATCTGTCATGTCTTCTGCCATCTCTTTTTTTTCTGGAGTGCTTTTCCACCACCTTGTTACTCTCTACACTCTTATTCGCATTCAACCCCCCCCCCCCCCTTCCTGCATTAGATACGCGTTTTCCACTCGAGACCCATATTTATTGATTGGCCAGTCAATATTAACTGTCTTTACTAACCTCTAGACAATCTATTGTCTCATTTTTTATTTCATCCAGCTTGTCGTACACTATCTTCTCTCACATTCKCTATAACAGTTATTCTTGTCGATTGATTTATTCCTTCTATTAAATATGAACGGACCGAAATTTCCTCTCCACCGCTTACCCAAAGATCTTTGTTCGGAAGTACTCAGAACTATGGACCTCTATGAAATGTGAGTTTATTTTCTTAAAACGGATTCTCTGCCTGAACTAAAAATAGTGTTGTGCAGGAAAATTCAAACTATTTTTTATGCATTGTTGTTTTATATGTTGAAGGCCGAGGCAACGTTAATGTAAAAAATGTACATGATGATAAGACTCTTCCGGTAATAGTGTTGTGCAGACAAATTCCAACCAGGTTTTACGCATTGAGATTTGACCGAAACTGAAGACCGAAACCACCTTGAGATTAAAAAAAGAATATTTGGATCGGACCCACCCGGTACTGTCCAAACCGTGACCAATTTTAGTCAAAAACCGAAAACGTTTTTTGATGGTGATAGTAATTAGATTGGACCTGGAAGGACTAATTAAAAAAATCACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCTACACTCTTATTCGCATTC</pcr_primer_p1>
		<pcr_primer_p2>ATTTCGGTCCGTTCATATTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTCTACACTCTTATTCGCATTCAACCCCCCCCCCCCCCTTCCTGCATTAGATACGCGTTTTCCACTCGAGACCCATATTTATTGATTGGCCAGTCAATATTAACTGTCTTTACTAACCTCTAGACAATCTATTGTCTCATTTTTTATTTCATCCAGCTTGTCGTACACTATCTTCTCTCACATTCTCTATAACAGTTATTCTTGTCGATTGATTTATTCCTTCTATTAAATATGAACGGACCGAAAT</canonical_amplicon>
		<polymorphic_amplicon>TCTCTACACTCTTATTCGCATTCAACCCCCCCCCCCCCCTTCCTGCATTAGATACGCGTTTTCCACTCGAGACCCATATTTATTGATTGGCCAGTCAATATTAACTGTCTTTACTAACCTCTAGACAATCTATTGTCTCATTTTTTATTTCATCCAGCTTGTCGTACACTATCTTCTCTCACATTCKCTATAACAGTTATTCTTGTCGATTGATTTATTCCTTCTATTAAATATGAACGGACCGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22346</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>422083</contig_pos>
        <strand>+</strand>
        <context>TGTGGATTAA[A/G]GGATCCAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATCAAATGTCGCTTGTCGATTTGAATCGTTTTTTCAAACTGTGGATTAA</left_flank>
        <right_flank>GGATCCAATCCAAAGTTGAACGAACTGTTTATTGAATGGGAGACGGAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCGTGTAAAAGTAAAACACTCAAGCGAAACAAGAGAGTTCGAATCAACGATCTCTAATCAACAAATGGATTTAGTAGAGTGGATCCGACACTTTAGTTTATTTGAAGAGAATCTTGGAATTGATTTTCATGTTGGAGACACACATTTCGTCACATTTCGCATTCCAACTATTCGGAACACTCTTCCAAAATTACGAGGCATCAGTATAACCTTTTCGAAAGATGAACCTGACGAGAGCGACATTATAAACGCACAAAACCTTTTGAGAGCGTTTCTCTCCAATATTCGATGCCTGGAACTGCTCAGTGTCCCTCTTCAAGAAAACCTTTCCCTTCAACACATCGGAATAGCAAATTTGGAAGTGTTGTATTTAGAATATCAAAGCAATGTGAGATTCGTCGATCTTTGTTCGTGGAACGTTGAAAAATGCATCATCGCGAAAAAGGGTGATCAAATGTCGCTTGTCGATTTGAATCGTTTTTTCAAACTGTGGATTAAAGGATCCAATCCAAAGTTGAACGAACTGTTTATTGAATGGGAGACGGAAATCATTCCAGACTGGAATGTCCTGTTGAAAGGATTGAAAATAGAAAAAGAAATTGAAGATCAAGAAGAGGAAGCAAAATATTTCACAATCCGAAATAGCCGTGATATTTGCGCTGAAATCAAAGTCTGTCATTCCGAAGACACCGCTAGTGTCGAAATGAATTGTCCCAATCCAGTCAATTAAAAACCGATTGAGATCAAAAATAGATCGGCATTTGGTAAGACACTGTTTTGATATCACATTCACAAAACTTCTAGCATCCTACATGATCAAATAATTATTTTTTTTGATAGTTTTCCTAATGATTAATTTGCAGCACACACACACACACACACACGCCCAATACTGTTTATTTTTATTCTCATTCCTATCAAATCGAAATCAATGAAGAAATGAATTCATCAATAAATAATTATTTTTATTTCGATTCTATTCCGATTGATTCTTGGAAA</canonical>
            <polymorphic>TCCGTGTAAAAGTAAAACACTCAAGCGAAACAAGAGAGTTCGAATCAACGATCTCTAATCAACAAATGGATTTAGTAGAGTGGATCCGACACTTTAGTTTATTTGAAGAGAATCTTGGAATTGATTTTCATGTTGGAGACACACATTTCGTCACATTTCGCATTCCAACTATTCGGAACACTCTTCCAAAATTACGAGGCATCAGTATAACCTTTTCGAAAGATGAACCTGACGAGAGCGACATTATAAACGCACAAAACCTTTTGAGAGCGTTTCTCTCCAATATTCGATGCCTGGAACTGCTCAGTGTCCCTCTTCAAGAAAACCTTTCCCTTCAACACATCGGAATAGCAAATTTGGAAGTGTTGTATTTAGAATATCAAAGCAATGTGAGATTCGTCGATCTTTGTTCGTGGAACGTTGAAAAATGCATCATCGCGAAAAAGGGTGATCAAATGTCGCTTGTCGATTTGAATCGTTTTTTCAAACTGTGGATTAARGGATCCAATCCAAAGTTGAACGAACTGTTTATTGAATGGGAGACGGAAATCATTCCAGACTGGAATGTCCTGTTGAAAGGATTGAAAATAGAAAAAGAAATTGAAGATCAAGAAGAGGAAGCAAAATATTTCACAATCCGAAATAGCCGTGATATTTGCGCTGAAATCAAAGTCTGTCATTCCGAAGACACCGCTAGTGTCGAAATGAATTGTCCCAATCCAGTCAATTAAAAACCGATTGAGATCAAAAATAGATCGGCATTTGGTAAGACACTGTTTTGATATCACATTCACAAAACTTCTAGCATCCTACATGATCAAATAATTATTTTTTTTGATAGTTTTCCTAATGATTAATTTGCAGCACACACACACACACACACACGCCCAATACTGTTTATTTTTATTCTCATTCCTATCAAATCGAAATCAATGAAGAAATGAATTCATCAATAAATAATTATTTTTATTTCGATTCTATTCCGATTGATTCTTGGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGCAAATTTGGAAGTGTTGTAT</pcr_primer_p1>
		<pcr_primer_p2>TCTTTTTCTATTTTCAATCCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGCAAATTTGGAAGTGTTGTATTTAGAATATCAAAGCAATGTGAGATTCGTCGATCTTTGTTCGTGGAACGTTGAAAAATGCATCATCGCGAAAAAGGGTGATCAAATGTCGCTTGTCGATTTGAATCGTTTTTTCAAACTGTGGATTAAAGGATCCAATCCAAAGTTGAACGAACTGTTTATTGAATGGGAGACGGAAATCATTCCAGACTGGAATGTCCTGTTGAAAGGATTGAAAATAGAAAAAGA</canonical_amplicon>
		<polymorphic_amplicon>TAGCAAATTTGGAAGTGTTGTATTTAGAATATCAAAGCAATGTGAGATTCGTCGATCTTTGTTCGTGGAACGTTGAAAAATGCATCATCGCGAAAAAGGGTGATCAAATGTCGCTTGTCGATTTGAATCGTTTTTTCAAACTGTGGATTAARGGATCCAATCCAAAGTTGAACGAACTGTTTATTGAATGGGAGACGGAAATCATTCCAGACTGGAATGTCCTGTTGAAAGGATTGAAAATAGAAAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22347</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>469894</contig_pos>
        <strand>+</strand>
        <context>TCAACAATAG[A/G]ATGACCGAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAAGACCTGATTCAGAAACCGGTTTCAAAACACAATTTTTCAACAATAG</left_flank>
        <right_flank>ATGACCGAAGAATTCAAGAGGACAACCGAGGAAGACTTCTCTGGAGGAAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTTAAATTGTCTTCCGGCCCGATCTTTTTGTTTATTTCTGCCCCTCATCCTCCAAATACCTCGAAAATCATAATTAATCTCACTATGAAACGATGCTTTTCTTATGTATTGTTTGATTTACCCTAATACTCCTGGTTCATATGCGATGCAAGTGAGTAAAATAAATTTTCTGGATAGAAATAAGACTAAAAACCACAATTCAGACCTGCGCTGGCATGAATTCAAAAAAGTAGAGGGACGCCAGAAAAACTAAGAGTAGACACTCAAAACAATGTCTCAGCCTTAAGCTAATTTATCCCTCTGTGCAAGATATCGAAAAGTGGTCAATTTCCAAATTTTCATCTTACTATCAACAACATTTCATCGGTTTATCGGTTTTGATATCTTTCACAGTAATCAAGAGAGACAGAAACTTTTTGTATAATTCCCATCAAACTAAACACACTTAAAGACCTGATTCAGAAACCGGTTTCAAAACACAATTTTTCAACAATAGAATGACCGAAGAATTCAAGAGGACAACCGAGGAAGACTTCTCTGGAGGAACAGCGGACTCTGAAAATGTTTCATCAAAAACACTGGATTGTTAACAAGGGTTTATTCGTTGAACTTTGGTTTGTGAACAAGAAGAAAAAAGAAAATATGACAAAAAAGCAAATTTAGTCGGAGGATTGGGAGAAAATCAAAAAAGAAGGTGAGTCAAAAGTAATAAAATGGGGGTTCGACGAATTTTGGGATCCAGCACTCATTGATCGTGCTCCATGGCCAAGAATGGCTTGATGGTGTGTCCGCGGGCAGAGAACTCTGCCATGGAGAGCGGAAAGTTGCACATCTCGGAGAAGCAATAGCACATCCACATTTTGGCAGCTGGGAGCCCGAATGTGCTTGGCATGTCCTGAAAAATAATATTTGAGAATCATCGAGGAATCTAAGCTTTGAAAAAACGCACCTGGAGGACACAGTCTTGCTCTTTTGGCATGTTGGCGATGGCCGACAC</canonical>
            <polymorphic>TTCTTTAAATTGTCTTCCGGCCCGATCTTTTTGTTTATTTCTGCCCCTCATCCTCCAAATACCTCGAAAATCATAATTAATCTCACTATGAAACGATGCTTTTCTTATGTATTGTTTGATTTACCCTAATACTCCTGGTTCATATGCGATGCAAGTGAGTAAAATAAATTTTCTGGATAGAAATAAGACTAAAAACCACAATTCAGACCTGCGCTGGCATGAATTCAAAAAAGTAGAGGGACGCCAGAAAAACTAAGAGTAGACACTCAAAACAATGTCTCAGCCTTAAGCTAATTTATCCCTCTGTGCAAGATATCGAAAAGTGGTCAATTTCCAAATTTTCATCTTACTATCAACAACATTTCATCGGTTTATCGGTTTTGATATCTTTCACAGTAATCAAGAGAGACAGAAACTTTTTGTATAATTCCCATCAAACTAAACACACTTAAAGACCTGATTCAGAAACCGGTTTCAAAACACAATTTTTCAACAATAGRATGACCGAAGAATTCAAGAGGACAACCGAGGAAGACTTCTCTGGAGGAACAGCGGACTCTGAAAATGTTTCATCAAAAACACTGGATTGTTAACAAGGGTTTATTCGTTGAACTTTGGTTTGTGAACAAGAAGAAAAAAGAAAATATGACAAAAAAGCAAATTTAGTCGGAGGATTGGGAGAAAATCAAAAAAGAAGGTGAGTCAAAAGTAATAAAATGGGGGTTCGACGAATTTTGGGATCCAGCACTCATTGATCGTGCTCCATGGCCAAGAATGGCTTGATGGTGTGTCCGCGGGCAGAGAACTCTGCCATGGAGAGCGGAAAGTTGCACATCTCGGAGAAGCAATAGCACATCCACATTTTGGCAGCTGGGAGCCCGAATGTGCTTGGCATGTCCTGAAAAATAATATTTGAGAATCATCGAGGAATCTAAGCTTTGAAAAAACGCACCTGGAGGACACAGTCTTGCTCTTTTGGCATGTTGGCGATGGCCGACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATAATTCCCATCAAACTAAACAC</pcr_primer_p1>
		<pcr_primer_p2>CTCCGACTAAATTTGCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATAATTCCCATCAAACTAAACACACTTAAAGACCTGATTCAGAAACCGGTTTCAAAACACAATTTTTCAACAATAGAATGACCGAAGAATTCAAGAGGACAACCGAGGAAGACTTCTCTGGAGGAACAGCGGACTCTGAAAATGTTTCATCAAAAACACTGGATTGTTAACAAGGGTTTATTCGTTGAACTTTGGTTTGTGAACAAGAAGAAAAAAGAAAATATGACAAAAAAGCAAATTTAGTCGGAG</canonical_amplicon>
		<polymorphic_amplicon>TATAATTCCCATCAAACTAAACACACTTAAAGACCTGATTCAGAAACCGGTTTCAAAACACAATTTTTCAACAATAGRATGACCGAAGAATTCAAGAGGACAACCGAGGAAGACTTCTCTGGAGGAACAGCGGACTCTGAAAATGTTTCATCAAAAACACTGGATTGTTAACAAGGGTTTATTCGTTGAACTTTGGTTTGTGAACAAGAAGAAAAAAGAAAATATGACAAAAAAGCAAATTTAGTCGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22348</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>470041</contig_pos>
        <strand></strand>
        <context>AAAGAAAATA[T/A]GACAAAAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GGGTTTATTCGTTGAACTTTGGTTTGTGAACAAGAAGAAAAAAGAAAATA</left_flank>
        <right_flank>GACAAAAAAGCAAATTTAGTCGGAGGATTGGGAGAAAATCAAAAAAGAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGCAAGTGAGTAAAATAAATTTTCTGGATAGAAATAAGACTAAAAACCACAATTCAGACCTGCGCTGGCATGAATTCAAAAAAGTAGAGGGACGCCAGAAAAACTAAGAGTAGACACTCAAAACAATGTCTCAGCCTTAAGCTAATTTATCCCTCTGTGCAAGATATCGAAAAGTGGTCAATTTCCAAATTTTCATCTTACTATCAACAACATTTCATCGGTTTATCGGTTTTGATATCTTTCACAGTAATCAAGAGAGACAGAAACTTTTTGTATAATTCCCATCAAACTAAACACACTTAAAGACCTGATTCAGAAACCGGTTTCAAAACACAATTTTTCAACAATAGAATGACCGAAGAATTCAAGAGGACAACCGAGGAAGACTTCTCTGGAGGAACAGCGGACTCTGAAAATGTTTCATCAAAAACACTGGATTGTTAACAAGGGTTTATTCGTTGAACTTTGGTTTGTGAACAAGAAGAAAAAAGAAAATATGACAAAAAAGCAAATTTAGTCGGAGGATTGGGAGAAAATCAAAAAAGAAGGTGAGTCAAAAGTAATAAAATGGGGGTTCGACGAATTTTGGGATCCAGCACTCATTGATCGTGCTCCATGGCCAAGAATGGCTTGATGGTGTGTCCGCGGGCAGAGAACTCTGCCATGGAGAGCGGAAAGTTGCACATCTCGGAGAAGCAATAGCACATCCACATTTTGGCAGCTGGGAGCCCGAATGTGCTTGGCATGTCCTGAAAAATAATATTTGAGAATCATCGAGGAATCTAAGCTTTGAAAAAACGCACCTGGAGGACACAGTCTTGCTCTTTTGGCATGTTGGCGATGGCCGACACCTTCGATGGGTGACGATCTCCACCTCCGAAGGCTTCGGATCCAGTGGCGACGTCGAAGAGCGAAGTGCAGAAGGTCCGGTGATGGAGGGTCTTGAAGACGCCTTCGTAGGCGTTGTATCCGTAGCAGGAGAGTCCGAGGGTTGGGGA</canonical>
            <polymorphic>GATGCAAGTGAGTAAAATAAATTTTCTGGATAGAAATAAGACTAAAAACCACAATTCAGACCTGCGCTGGCATGAATTCAAAAAAGTAGAGGGACGCCAGAAAAACTAAGAGTAGACACTCAAAACAATGTCTCAGCCTTAAGCTAATTTATCCCTCTGTGCAAGATATCGAAAAGTGGTCAATTTCCAAATTTTCATCTTACTATCAACAACATTTCATCGGTTTATCGGTTTTGATATCTTTCACAGTAATCAAGAGAGACAGAAACTTTTTGTATAATTCCCATCAAACTAAACACACTTAAAGACCTGATTCAGAAACCGGTTTCAAAACACAATTTTTCAACAATAGAATGACCGAAGAATTCAAGAGGACAACCGAGGAAGACTTCTCTGGAGGAACAGCGGACTCTGAAAATGTTTCATCAAAAACACTGGATTGTTAACAAGGGTTTATTCGTTGAACTTTGGTTTGTGAACAAGAAGAAAAAAGAAAATAWGACAAAAAAGCAAATTTAGTCGGAGGATTGGGAGAAAATCAAAAAAGAAGGTGAGTCAAAAGTAATAAAATGGGGGTTCGACGAATTTTGGGATCCAGCACTCATTGATCGTGCTCCATGGCCAAGAATGGCTTGATGGTGTGTCCGCGGGCAGAGAACTCTGCCATGGAGAGCGGAAAGTTGCACATCTCGGAGAAGCAATAGCACATCCACATTTTGGCAGCTGGGAGCCCGAATGTGCTTGGCATGTCCTGAAAAATAATATTTGAGAATCATCGAGGAATCTAAGCTTTGAAAAAACGCACCTGGAGGACACAGTCTTGCTCTTTTGGCATGTTGGCGATGGCCGACACCTTCGATGGGTGACGATCTCCACCTCCGAAGGCTTCGGATCCAGTGGCGACGTCGAAGAGCGAAGTGCAGAAGGTCCGGTGATGGAGGGTCTTGAAGACGCCTTCGTAGGCGTTGTATCCGTAGCAGGAGAGTCCGAGGGTTGGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAAACACAATTTTTCAAC</pcr_primer_p1>
		<pcr_primer_p2>CCCCATTTTATTACTTTTGACTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAAACACAATTTTTCAACAATAGAATGACCGAAGAATTCAAGAGGACAACCGAGGAAGACTTCTCTGGAGGAACAGCGGACTCTGAAAATGTTTCATCAAAAACACTGGATTGTTAACAAGGGTTTATTCGTTGAACTTTGGTTTGTGAACAAGAAGAAAAAAGAAAATATGACAAAAAAGCAAATTTAGTCGGAGGATTGGGAGAAAATCAAAAAAGAAGGTGAGTCAAAAGTAATAAAATGGGG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAAACACAATTTTTCAACAATAGAATGACCGAAGAATTCAAGAGGACAACCGAGGAAGACTTCTCTGGAGGAACAGCGGACTCTGAAAATGTTTCATCAAAAACACTGGATTGTTAACAAGGGTTTATTCGTTGAACTTTGGTTTGTGAACAAGAAGAAAAAAGAAAATAWGACAAAAAAGCAAATTTAGTCGGAGGATTGGGAGAAAATCAAAAAAGAAGGTGAGTCAAAAGTAATAAAATGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22349</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>471544</contig_pos>
        <strand>+</strand>
        <context>TTAAATGTAT[C/T]AAAATATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCTAAATCAAAATCATGTTGTTTAGTTCGCGATCCTTCTTTAAATGTAT</left_flank>
        <right_flank>AAAATATTTTTTAAGTTTTCAGGAACAGCTGTTGTGAAAAGTCTGATGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACATCAATAAGAGGTTGATCAAAACATCTCTACAGTTAAAGAAGTACACTTTTTTTCGTGTACCTGTAGACACAAAATCACAATTTTCGCACTCGGGTTTCAGGTAATATTTCAAAAATTCTAGAACATTAGCCGCTGCTAAACGTTTCTGCCATTCATAAAACTTGACATGGGACTGAAACTTTTGGAATTTTTAAATGTGAGCAACACCAGCAAACCAGGATCTCGGAAGTATGATGCTCTGAGAATTGATGAATGCTTCATTTTTCACATAAATTGAGTTATTTGAGGTAAAACTGAATGGCACTTTACTGGAGAAATACCCATACCGATACGTCTCAAGTTTGTATCCTCAATCGAAATGTGTAAAAACATCTTTGGGGTATATCATTTTAGGTTGTTGATTGAAATTTTGAAAATGAGGCTTACAATATTATTAATATTCAGCTCCTAAATCAAAATCATGTTGTTTAGTTCGCGATCCTTCTTTAAATGTATCAAAATATTTTTTAAGTTTTCAGGAACAGCTGTTGTGAAAAGTCTGATGAAAGGTCCTGAGAAAATATTTCAATATTTCAGATTATTGTTTTGCTTTGGCAAGGATCGATTGTACGGAAAATGAAAAATATTATTTTTTATAATTTGAAAATTTTCAGCGGTATTTCATAATTAGTCTGTAGCAAGACTTGCGCCAATTTAACAGCGCGTAGATTGCTTTGCTGGATTTCTACGAAAAAGTCGCCAATTACAAAAGCGATGATCTTGTTTTGTTCAGGACTGTCTGAAATTTTCAGACAATAGTAAAAAGTCTGGACTACTTTTTAGTACTTCAAAATGACTCTCCCATTGAACATTAACAATTTTATTCGGTATTGTAATTTGTTATATGAATTCATCTGATTTACTGATATTTTTACTGCAAAAAATGAGTCTGGTTTCATTCATAAATTGTGTTCATCACTTCAAACATTTCTGCGATTTTGATTTCATTTTTTATGA</canonical>
            <polymorphic>AACATCAATAAGAGGTTGATCAAAACATCTCTACAGTTAAAGAAGTACACTTTTTTTCGTGTACCTGTAGACACAAAATCACAATTTTCGCACTCGGGTTTCAGGTAATATTTCAAAAATTCTAGAACATTAGCCGCTGCTAAACGTTTCTGCCATTCATAAAACTTGACATGGGACTGAAACTTTTGGAATTTTTAAATGTGAGCAACACCAGCAAACCAGGATCTCGGAAGTATGATGCTCTGAGAATTGATGAATGCTTCATTTTTCACATAAATTGAGTTATTTGAGGTAAAACTGAATGGCACTTTACTGGAGAAATACCCATACCGATACGTCTCAAGTTTGTATCCTCAATCGAAATGTGTAAAAACATCTTTGGGGTATATCATTTTAGGTTGTTGATTGAAATTTTGAAAATGAGGCTTACAATATTATTAATATTCAGCTCCTAAATCAAAATCATGTTGTTTAGTTCGCGATCCTTCTTTAAATGTATYAAAATATTTTTTAAGTTTTCAGGAACAGCTGTTGTGAAAAGTCTGATGAAAGGTCCTGAGAAAATATTTCAATATTTCAGATTATTGTTTTGCTTTGGCAAGGATCGATTGTACGGAAAATGAAAAATATTATTTTTTATAATTTGAAAATTTTCAGCGGTATTTCATAATTAGTCTGTAGCAAGACTTGCGCCAATTTAACAGCGCGTAGATTGCTTTGCTGGATTTCTACGAAAAAGTCGCCAATTACAAAAGCGATGATCTTGTTTTGTTCAGGACTGTCTGAAATTTTCAGACAATAGTAAAAAGTCTGGACTACTTTTTAGTACTTCAAAATGACTCTCCCATTGAACATTAACAATTTTATTCGGTATTGTAATTTGTTATATGAATTCATCTGATTTACTGATATTTTTACTGCAAAAAATGAGTCTGGTTTCATTCATAAATTGTGTTCATCACTTCAAACATTTCTGCGATTTTGATTTCATTTTTTATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATCCTCAATCGAAATGTGTAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAGCAAAACAATAATCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTATCCTCAATCGAAATGTGTAAAAACATCTTTGGGGTATATCATTTTAGGTTGTTGATTGAAATTTTGAAAATGAGGCTTACAATATTATTAATATTCAGCTCCTAAATCAAAATCATGTTGTTTAGTTCGCGATCCTTCTTTAAATGTATCAAAATATTTTTTAAGTTTTCAGGAACAGCTGTTGTGAAAAGTCTGATGAAAGGTCCTGAGAAAATATTTCAATATTTCAGATTATTGTTTTGCTTTG</canonical_amplicon>
		<polymorphic_amplicon>GTATCCTCAATCGAAATGTGTAAAAACATCTTTGGGGTATATCATTTTAGGTTGTTGATTGAAATTTTGAAAATGAGGCTTACAATATTATTAATATTCAGCTCCTAAATCAAAATCATGTTGTTTAGTTCGCGATCCTTCTTTAAATGTATYAAAATATTTTTTAAGTTTTCAGGAACAGCTGTTGTGAAAAGTCTGATGAAAGGTCCTGAGAAAATATTTCAATATTTCAGATTATTGTTTTGCTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22350</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>471482</contig_pos>
        <strand>+</strand>
        <context>TACAATATTA[C/T]TAATATTCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCATTTTAGGTTGTTGATTGAAATTTTGAAAATGAGGCTTACAATATTA</left_flank>
        <right_flank>TAATATTCAGCTCCTAAATCAAAATCATGTTGTTTAGTTCGCGATCCTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACAAATAAAGCTTGATAAGAAAAGAGAATCTGAAATTTGACTAGCTTGACTCCTATCAGAAACATCAATAAGAGGTTGATCAAAACATCTCTACAGTTAAAGAAGTACACTTTTTTTCGTGTACCTGTAGACACAAAATCACAATTTTCGCACTCGGGTTTCAGGTAATATTTCAAAAATTCTAGAACATTAGCCGCTGCTAAACGTTTCTGCCATTCATAAAACTTGACATGGGACTGAAACTTTTGGAATTTTTAAATGTGAGCAACACCAGCAAACCAGGATCTCGGAAGTATGATGCTCTGAGAATTGATGAATGCTTCATTTTTCACATAAATTGAGTTATTTGAGGTAAAACTGAATGGCACTTTACTGGAGAAATACCCATACCGATACGTCTCAAGTTTGTATCCTCAATCGAAATGTGTAAAAACATCTTTGGGGTATATCATTTTAGGTTGTTGATTGAAATTTTGAAAATGAGGCTTACAATATTATTAATATTCAGCTCCTAAATCAAAATCATGTTGTTTAGTTCGCGATCCTTCTTTAAATGTATCAAAATATTTTTTAAGTTTTCAGGAACAGCTGTTGTGAAAAGTCTGATGAAAGGTCCTGAGAAAATATTTCAATATTTCAGATTATTGTTTTGCTTTGGCAAGGATCGATTGTACGGAAAATGAAAAATATTATTTTTTATAATTTGAAAATTTTCAGCGGTATTTCATAATTAGTCTGTAGCAAGACTTGCGCCAATTTAACAGCGCGTAGATTGCTTTGCTGGATTTCTACGAAAAAGTCGCCAATTACAAAAGCGATGATCTTGTTTTGTTCAGGACTGTCTGAAATTTTCAGACAATAGTAAAAAGTCTGGACTACTTTTTAGTACTTCAAAATGACTCTCCCATTGAACATTAACAATTTTATTCGGTATTGTAATTTGTTATATGAATTCATCTGATTTACTGATATTTTTACTGCAAAAAATGAGTCTGGTT</canonical>
            <polymorphic>TCACAAATAAAGCTTGATAAGAAAAGAGAATCTGAAATTTGACTAGCTTGACTCCTATCAGAAACATCAATAAGAGGTTGATCAAAACATCTCTACAGTTAAAGAAGTACACTTTTTTTCGTGTACCTGTAGACACAAAATCACAATTTTCGCACTCGGGTTTCAGGTAATATTTCAAAAATTCTAGAACATTAGCCGCTGCTAAACGTTTCTGCCATTCATAAAACTTGACATGGGACTGAAACTTTTGGAATTTTTAAATGTGAGCAACACCAGCAAACCAGGATCTCGGAAGTATGATGCTCTGAGAATTGATGAATGCTTCATTTTTCACATAAATTGAGTTATTTGAGGTAAAACTGAATGGCACTTTACTGGAGAAATACCCATACCGATACGTCTCAAGTTTGTATCCTCAATCGAAATGTGTAAAAACATCTTTGGGGTATATCATTTTAGGTTGTTGATTGAAATTTTGAAAATGAGGCTTACAATATTAYTAATATTCAGCTCCTAAATCAAAATCATGTTGTTTAGTTCGCGATCCTTCTTTAAATGTATCAAAATATTTTTTAAGTTTTCAGGAACAGCTGTTGTGAAAAGTCTGATGAAAGGTCCTGAGAAAATATTTCAATATTTCAGATTATTGTTTTGCTTTGGCAAGGATCGATTGTACGGAAAATGAAAAATATTATTTTTTATAATTTGAAAATTTTCAGCGGTATTTCATAATTAGTCTGTAGCAAGACTTGCGCCAATTTAACAGCGCGTAGATTGCTTTGCTGGATTTCTACGAAAAAGTCGCCAATTACAAAAGCGATGATCTTGTTTTGTTCAGGACTGTCTGAAATTTTCAGACAATAGTAAAAAGTCTGGACTACTTTTTAGTACTTCAAAATGACTCTCCCATTGAACATTAACAATTTTATTCGGTATTGTAATTTGTTATATGAATTCATCTGATTTACTGATATTTTTACTGCAAAAAATGAGTCTGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>243 187 158 157 99 83 52 21</canonical_bands>
                <polymorphic_bands>295 187 158 157 99 83 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATCCTCAATCGAAATGTGTAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAGCAAAACAATAATCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTATCCTCAATCGAAATGTGTAAAAACATCTTTGGGGTATATCATTTTAGGTTGTTGATTGAAATTTTGAAAATGAGGCTTACAATATTATTAATATTCAGCTCCTAAATCAAAATCATGTTGTTTAGTTCGCGATCCTTCTTTAAATGTATCAAAATATTTTTTAAGTTTTCAGGAACAGCTGTTGTGAAAAGTCTGATGAAAGGTCCTGAGAAAATATTTCAATATTTCAGATTATTGTTTTGCTTTG</canonical_amplicon>
		<polymorphic_amplicon>GTATCCTCAATCGAAATGTGTAAAAACATCTTTGGGGTATATCATTTTAGGTTGTTGATTGAAATTTTGAAAATGAGGCTTACAATATTAYTAATATTCAGCTCCTAAATCAAAATCATGTTGTTTAGTTCGCGATCCTTCTTTAAATGTATCAAAATATTTTTTAAGTTTTCAGGAACAGCTGTTGTGAAAAGTCTGATGAAAGGTCCTGAGAAAATATTTCAATATTTCAGATTATTGTTTTGCTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22351</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>471975</contig_pos>
        <strand>+</strand>
        <context>CAAAAAATGA[C/G]TCTGGTTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTGTTATATGAATTCATCTGATTTACTGATATTTTTACTGCAAAAAATGA</left_flank>
        <right_flank>TCTGGTTTCATTCATAAATTGTGTTCATCACTTCAAACATTTCTGCGATT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATTATTAATATTCAGCTCCTAAATCAAAATCATGTTGTTTAGTTCGCGATCCTTCTTTAAATGTATCAAAATATTTTTTAAGTTTTCAGGAACAGCTGTTGTGAAAAGTCTGATGAAAGGTCCTGAGAAAATATTTCAATATTTCAGATTATTGTTTTGCTTTGGCAAGGATCGATTGTACGGAAAATGAAAAATATTATTTTTTATAATTTGAAAATTTTCAGCGGTATTTCATAATTAGTCTGTAGCAAGACTTGCGCCAATTTAACAGCGCGTAGATTGCTTTGCTGGATTTCTACGAAAAAGTCGCCAATTACAAAAGCGATGATCTTGTTTTGTTCAGGACTGTCTGAAATTTTCAGACAATAGTAAAAAGTCTGGACTACTTTTTAGTACTTCAAAATGACTCTCCCATTGAACATTAACAATTTTATTCGGTATTGTAATTTGTTATATGAATTCATCTGATTTACTGATATTTTTACTGCAAAAAATGAGTCTGGTTTCATTCATAAATTGTGTTCATCACTTCAAACATTTCTGCGATTTTGATTTCATTTTTTATGATAAACGTCAACTACGAAGACTATACTCTCTTCCGATTCTTTGCTCGAGCTATCCTTTCATCCTATAATCTGTTATGCTTTTTATAAACTTTGAGAAATGTGTCATACAATGAAACGATATCATTTAGATTTATTGAAATAGGTATCAAGTGAAAAACACGTTTAACATTATCTGGGAAAATCTTCTCAAAGCGAAAAACATCTATCTGAAATCCTAAATTTCTGGTATTATAGTTTAAAAAAAAAAAGAACAAAGTTCGCTTATGGAAACAGTATCCAAGTTCTTGGGTAAAGAATTTTGGGATATCATGGAAAATGACGGAAAATTTTCATAAAACAAAGGGGTATTTCGTCTTATAATTTTAAATTACCAGGTTCTTTCTCATATCTTCATAGATTCCAAGGTACTCTTATCCCACAGTTTCAGCACTA</canonical>
            <polymorphic>ATATTATTAATATTCAGCTCCTAAATCAAAATCATGTTGTTTAGTTCGCGATCCTTCTTTAAATGTATCAAAATATTTTTTAAGTTTTCAGGAACAGCTGTTGTGAAAAGTCTGATGAAAGGTCCTGAGAAAATATTTCAATATTTCAGATTATTGTTTTGCTTTGGCAAGGATCGATTGTACGGAAAATGAAAAATATTATTTTTTATAATTTGAAAATTTTCAGCGGTATTTCATAATTAGTCTGTAGCAAGACTTGCGCCAATTTAACAGCGCGTAGATTGCTTTGCTGGATTTCTACGAAAAAGTCGCCAATTACAAAAGCGATGATCTTGTTTTGTTCAGGACTGTCTGAAATTTTCAGACAATAGTAAAAAGTCTGGACTACTTTTTAGTACTTCAAAATGACTCTCCCATTGAACATTAACAATTTTATTCGGTATTGTAATTTGTTATATGAATTCATCTGATTTACTGATATTTTTACTGCAAAAAATGASTCTGGTTTCATTCATAAATTGTGTTCATCACTTCAAACATTTCTGCGATTTTGATTTCATTTTTTATGATAAACGTCAACTACGAAGACTATACTCTCTTCCGATTCTTTGCTCGAGCTATCCTTTCATCCTATAATCTGTTATGCTTTTTATAAACTTTGAGAAATGTGTCATACAATGAAACGATATCATTTAGATTTATTGAAATAGGTATCAAGTGAAAAACACGTTTAACATTATCTGGGAAAATCTTCTCAAAGCGAAAAACATCTATCTGAAATCCTAAATTTCTGGTATTATAGTTTAAAAAAAAAAAGAACAAAGTTCGCTTATGGAAACAGTATCCAAGTTCTTGGGTAAAGAATTTTGGGATATCATGGAAAATGACGGAAAATTTTCATAAAACAAAGGGGTATTTCGTCTTATAATTTTAAATTACCAGGTTCTTTCTCATATCTTCATAGATTCCAAGGTACTCTTATCCCACAGTTTCAGCACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTATTCGGTATTGTAATTTGT</pcr_primer_p1>
		<pcr_primer_p2>TTGTATGACACATTTCTCAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTTTATTCGGTATTGTAATTTGTTATATGAATTCATCTGATTTACTGATATTTTTACTGCAAAAAATGAGTCTGGTTTCATTCATAAATTGTGTTCATCACTTCAAACATTTCTGCGATTTTGATTTCATTTTTTATGATAAACGTCAACTACGAAGACTATACTCTCTTCCGATTCTTTGCTCGAGCTATCCTTTCATCCTATAATCTGTTATGCTTTTTATAAACTTTGAGAAATGTGTCATACAA</canonical_amplicon>
		<polymorphic_amplicon>AATTTTATTCGGTATTGTAATTTGTTATATGAATTCATCTGATTTACTGATATTTTTACTGCAAAAAATGASTCTGGTTTCATTCATAAATTGTGTTCATCACTTCAAACATTTCTGCGATTTTGATTTCATTTTTTATGATAAACGTCAACTACGAAGACTATACTCTCTTCCGATTCTTTGCTCGAGCTATCCTTTCATCCTATAATCTGTTATGCTTTTTATAAACTTTGAGAAATGTGTCATACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22352</snp_id>
        <super_contig>c013501201.Contig1</super_contig>
        <contig_pos>17927</contig_pos>
        <strand>+</strand>
        <context>ACTAAAATTT[A/T]AAAAACTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTCTAAAACGGCACTTGTATCACTAAAATTGAAAAAGAAACTAAAATTT</left_flank>
        <right_flank>AAAAACTCTTTCCGAAACAGCAAAGAAATTATTCCAGAGCGCAATATCCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTCGCCGTTCTACATTTTCCAGGTAAGTATTTGATTAGAAGTTATAAAATCTAGGGAGTATGTTTTCCAGACATTTTCAAACCTTAAGAATCTCTAATTCCAGGCAATCAGTGTCACGGTTTGGTACATCGATGACTATGTCTGGTACGCCCTCCTTATCATCGTCATGTCCCTTTACTCCGTTGTCATGACACTCCGCCAAACTCGTTCCCAACAACGACGTCTTCAATCAATGGTTGTTGAGCACGATGAAGTGGAAGTGATAAGAGAGAATGGAAGAGTCTGCAAGATGGATAGTTCGGAGATTGTGCCTGGAGACGTGATGGTGATTCCTCCTCAAGGATGCATGATGTACTGTGATTGTGTTCTTTTGAATGGAACTGTTATTGTCAATGAGTCAATGCTCACTGGAGAATCCATTCCGATTACGAAGGTGAGCTAACTTGGTGTCTAAAACGGCACTTGTATCACTAAAATTGAAAAAGAAACTAAAATTTTAAAAACTCTTTCCGAAACAGCAAAGAAATTATTCCAGAGCGCAATATCCGATGATGGTCATGAGAAGGTGTTCTCTATGGAGAAACATGGGAAGAATATTATTTTCAACGGGACCAAAGTGCTCCAAACGAAATATTACAAGGGACAACATGTGAAGGCACTGGTCATCCGAACTGCATACTCTACAACCAAGGGACAGCTGATTCGAGCGATTATGTATCCGAAACCAGCGGATTTCAAGTTTTTCAGCGAGTTGATGAAGGTAATTGGGATTTTTTCTGTTTCAAGTTTAGGTATTGAGTAATTTATATTTTTGTTAATTAATAGTTTACAGTAAGTTGACACACATTTACATAATGATGCTTTTTAACCAAAAAAAAATTATCCAGTTCATCGGTGTCCTTTCCATCGTCGCCTTCTTCGGATTCATGTACACCTCGATCATCCTATTCTATCGTGGAAGTTCCATTCGCAAAATTGTGATCCGCGCTCTCGATCTT</canonical>
            <polymorphic>TTGTCGCCGTTCTACATTTTCCAGGTAAGTATTTGATTAGAAGTTATAAAATCTAGGGAGTATGTTTTCCAGACATTTTCAAACCTTAAGAATCTCTAATTCCAGGCAATCAGTGTCACGGTTTGGTACATCGATGACTATGTCTGGTACGCCCTCCTTATCATCGTCATGTCCCTTTACTCCGTTGTCATGACACTCCGCCAAACTCGTTCCCAACAACGACGTCTTCAATCAATGGTTGTTGAGCACGATGAAGTGGAAGTGATAAGAGAGAATGGAAGAGTCTGCAAGATGGATAGTTCGGAGATTGTGCCTGGAGACGTGATGGTGATTCCTCCTCAAGGATGCATGATGTACTGTGATTGTGTTCTTTTGAATGGAACTGTTATTGTCAATGAGTCAATGCTCACTGGAGAATCCATTCCGATTACGAAGGTGAGCTAACTTGGTGTCTAAAACGGCACTTGTATCACTAAAATTGAAAAAGAAACTAAAATTTWAAAAACTCTTTCCGAAACAGCAAAGAAATTATTCCAGAGCGCAATATCCGATGATGGTCATGAGAAGGTGTTCTCTATGGAGAAACATGGGAAGAATATTATTTTCAACGGGACCAAAGTGCTCCAAACGAAATATTACAAGGGACAACATGTGAAGGCACTGGTCATCCGAACTGCATACTCTACAACCAAGGGACAGCTGATTCGAGCGATTATGTATCCGAAACCAGCGGATTTCAAGTTTTTCAGCGAGTTGATGAAGGTAATTGGGATTTTTTCTGTTTCAAGTTTAGGTATTGAGTAATTTATATTTTTGTTAATTAATAGTTTACAGTAAGTTGACACACATTTACATAATGATGCTTTTTAACCAAAAAAAAATTATCCAGTTCATCGGTGTCCTTTCCATCGTCGCCTTCTTCGGATTCATGTACACCTCGATCATCCTATTCTATCGTGGAAGTTCCATTCGCAAAATTGTGATCCGCGCTCTCGATCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>413 318 133 86 46 4</canonical_bands>
                <polymorphic_bands>731 133 86 46 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTGTGATTGTGTTCTTTTGAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAATAATATTCTTCCCATGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTGTGATTGTGTTCTTTTGAATGGAACTGTTATTGTCAATGAGTCAATGCTCACTGGAGAATCCATTCCGATTACGAAGGTGAGCTAACTTGGTGTCTAAAACGGCACTTGTATCACTAAAATTGAAAAAGAAACTAAAATTTTAAAAACTCTTTCCGAAACAGCAAAGAAATTATTCCAGAGCGCAATATCCGATGATGGTCATGAGAAGGTGTTCTCTATGGAGAAACATGGGAAGAATATTATTTT</canonical_amplicon>
		<polymorphic_amplicon>ACTGTGATTGTGTTCTTTTGAATGGAACTGTTATTGTCAATGAGTCAATGCTCACTGGAGAATCCATTCCGATTACGAAGGTGAGCTAACTTGGTGTCTAAAACGGCACTTGTATCACTAAAATTGAAAAAGAAACTAAAATTTWAAAAACTCTTTCCGAAACAGCAAAGAAATTATTCCAGAGCGCAATATCCGATGATGGTCATGAGAAGGTGTTCTCTATGGAGAAACATGGGAAGAATATTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22353</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>23249</contig_pos>
        <strand>+</strand>
        <context>TGAATACAAA[A/G]ACTACGGTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGAATAGAAATCAAAATTGTTTCCCTATTCGAAAAAACTTGAATACAAA</left_flank>
        <right_flank>ACTACGGTTTTTTGCTTGTAGGGAAACACCTTGTTTGTCTCTAGAGCGTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCATTCACATTGAAAAATATTCCAGGCATTGAAATGAGAAATTGAGGAAGTTTTCCTACAAAACGGTACGATTTTATGAAAAAAGAAGAATAAAAACAGTATTTAAGACAAAACTGAGTTCAAAAAACAACAACCTCCGACGGGAATGAACAAAAAATGGAATAGCAAGAGATAAGATGGTCATGCATGGACACTAGGTAGAGACAGAAAAGATAATAAAAGAGTAGACACAGGTTAGAAGATCACAAAATTTTATGTCATTGTGTCCGAAAAAGATTCGATTTCACAGATGAATGATGGTCAATATAATGGTTGGGAAGACAATTTTCGGATTATTTTGTGTACGAAAAAAAAACAAAAATTGGTATGGTTGAATCGAGAAAGAAGATCATGCGGTTGATGACAAAACAAAATACTGTACTAGACTGAATGAAGAAAATATTCTTGAAGGAATAGAAATCAAAATTGTTTCCCTATTCGAAAAAACTTGAATACAAAGACTACGGTTTTTTGCTTGTAGGGAAACACCTTGTTTGTCTCTAGAGCGTGACTGTGTTATCAGTAAAGAACTGTCCGTATCTGTCTTGTTGCATCTACTGACCAGAACCATTTGGAAAATATAAGATTTATTCATTTTATAATTATTTTTTTGAACAGAGCTCTCTTATCCTGTCGGCGCTCAGAGGAGAGATGGTATCCACAAACTCCTCGATTCCATTATGTTCCCTCCAATCATCCACACAACACATGATTGCAGAATGAACCGCTCCACAGGACATCATCAATGGTGGCTCTCCGATTCCCTTTGACGAATAAACTTCTGCTCCATTGGCTTTGTTGATTCCTAGAAGCTTGACTCTGAAGTCTTTAGGAACATCTCTGGCTCTTGGTATTCTGTATTTTCCCGCGGTATTCTGTTCCAAATGACCAGTTTTCTCATCGTAAGATATTTTTTCGCATGTCACATATCCGTAGCCTTGCATGAATGATCCCTCGATT</canonical>
            <polymorphic>TCCATTCACATTGAAAAATATTCCAGGCATTGAAATGAGAAATTGAGGAAGTTTTCCTACAAAACGGTACGATTTTATGAAAAAAGAAGAATAAAAACAGTATTTAAGACAAAACTGAGTTCAAAAAACAACAACCTCCGACGGGAATGAACAAAAAATGGAATAGCAAGAGATAAGATGGTCATGCATGGACACTAGGTAGAGACAGAAAAGATAATAAAAGAGTAGACACAGGTTAGAAGATCACAAAATTTTATGTCATTGTGTCCGAAAAAGATTCGATTTCACAGATGAATGATGGTCAATATAATGGTTGGGAAGACAATTTTCGGATTATTTTGTGTACGAAAAAAAAACAAAAATTGGTATGGTTGAATCGAGAAAGAAGATCATGCGGTTGATGACAAAACAAAATACTGTACTAGACTGAATGAAGAAAATATTCTTGAAGGAATAGAAATCAAAATTGTTTCCCTATTCGAAAAAACTTGAATACAAARACTACGGTTTTTTGCTTGTAGGGAAACACCTTGTTTGTCTCTAGAGCGTGACTGTGTTATCAGTAAAGAACTGTCCGTATCTGTCTTGTTGCATCTACTGACCAGAACCATTTGGAAAATATAAGATTTATTCATTTTATAATTATTTTTTTGAACAGAGCTCTCTTATCCTGTCGGCGCTCAGAGGAGAGATGGTATCCACAAACTCCTCGATTCCATTATGTTCCCTCCAATCATCCACACAACACATGATTGCAGAATGAACCGCTCCACAGGACATCATCAATGGTGGCTCTCCGATTCCCTTTGACGAATAAACTTCTGCTCCATTGGCTTTGTTGATTCCTAGAAGCTTGACTCTGAAGTCTTTAGGAACATCTCTGGCTCTTGGTATTCTGTATTTTCCCGCGGTATTCTGTTCCAAATGACCAGTTTTCTCATCGTAAGATATTTTTTCGCATGTCACATATCCGTAGCCTTGCATGAATGATCCCTCGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACAAAAATTGGTATGGTTGA</pcr_primer_p1>
		<pcr_primer_p2>CAGTAGATGCAACAAGACAGATA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAACAAAAATTGGTATGGTTGAATCGAGAAAGAAGATCATGCGGTTGATGACAAAACAAAATACTGTACTAGACTGAATGAAGAAAATATTCTTGAAGGAATAGAAATCAAAATTGTTTCCCTATTCGAAAAAACTTGAATACAAAGACTACGGTTTTTTGCTTGTAGGGAAACACCTTGTTTGTCTCTAGAGCGTGACTGTGTTATCAGTAAAGAACTGTCCGTATCTGTCTTGTTGCATCTACTG</canonical_amplicon>
		<polymorphic_amplicon>AAACAAAAATTGGTATGGTTGAATCGAGAAAGAAGATCATGCGGTTGATGACAAAACAAAATACTGTACTAGACTGAATGAAGAAAATATTCTTGAAGGAATAGAAATCAAAATTGTTTCCCTATTCGAAAAAACTTGAATACAAARACTACGGTTTTTTGCTTGTAGGGAAACACCTTGTTTGTCTCTAGAGCGTGACTGTGTTATCAGTAAAGAACTGTCCGTATCTGTCTTGTTGCATCTACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22391</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>27086</contig_pos>
        <strand>+</strand>
        <context>AAAAWGAACA[A/T]TTACCGAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATTCAGAATTGCTTGATCCTCAGAGTCCGCATATGTCTGAAAAAGAACA</left_flank>
        <right_flank>TTACCGAATCAGGCAAAACATCGTACTCGTACCCTGAGAGATGGCGGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGTTTTTGTTGAACTTAAATCGGAGCTGAAAAATTTTACAGCAAAGTTGGCTACTTGTGGAGACGAAAATTTTCGGAAAAGTTCTGATACTGCAATTCCAATACTTTCATGTAGATGACGGGTAAGCGTGTCAGAAAATCCTAAAAATCAGATTTCTTTTTAAAAAGACACTGATCTCATACTTTGAATACTAACGGCTGCTCCTATGTGCACTGAATCGGTTTCCACTTTGATTTCGTTAAATTCTCGCACATATTTTGTAGAAATCCATTTTTCTGAAACACATGCTGGGCTCTGAGAGGTTGCTGAAAACGGAAGAATAAAATTATAACATTATGTTTTTCTCACTTAATCTTGTGATAAGTCCTGATGAAATAACATTCTTGCCCTCTCTAGATTGCTTGAATTGAGTTAAATTCTTTGGAAGCGTTAGTTCGACACGGTTTCCATTCAGAATTGCTTGATCCTCAGAGTCCGCATATGTCTGAAAAAGAACAATTACCGAATCAGGCAAAACATCGTACTCGTACCCTGAGAGATGGCGGAAAGATGATTTCCTGAGTTGGATCGTATTTTGGAAAGTCACTGAACGAAAGTAGCTTTTCGTATCCTTCATCCTCATCGCTAGATGATTTGTCTTTACAACACCCTCCTCCATTTTTATTTCCTCCACAACATCCACCACTTTCCGGAGAGAAACTGTAGAGAGCCTCAAGAATTGGACGATAACCAGTACAACGACACAAATTGGCACGAATAGCTGCATTGATCTGATCAATCGAAGGATCCGGGTGATTACGGAGAAGAGCATACGCAGACATCACAAATCCAGGGGAACAGAAACCACCTGGAAATGTTTAGTTTTTGGAAAAAAATAAAAATATAACTCACATTGTAATGCATGTCCTCTAGCCATCCTATCCTGGATCGGATGAATCTTTTCTCGACTTCCAACGCCTTCTACAGTAATCACAAATGTTCGATGAACATGAAAAAGA</canonical>
            <polymorphic>ATTGTTTTTGTTGAACTTAAATCGGAGCTGAAAAATTTTACAGCAAAGTTGGCTACTTGTGGAGACGAAAATTTTCGGAAAAGTTCTGATACTGCAATTCCAATACTTTCATGTAGATGACGGGTAAGCGTGTCAGAAAATCCTAAAAATCAGATTTCTTTTTAAAAAGACACTGATCTCATACTTTGAATACTAACGGCTGCTCCTATGTGCACTGAATCGGTTTCCACTTTGATTTCGTTAAATTCTCGCACATATTTTGTAGAAATCCATTTTTCTGAAACACATGCTGGGCTCTGAGAGGTTGCTGAAAACGGAAGAATAAAATTATAACATTATGTTTTTCTCACTTAATCTTGTGATAAGTCCTGATGAAATAACATTCTTGCCCTCTCTAGATTGCTTGAATTGAGTTAAATTCTTTGGAAGCGTTAGTTCGACACGGTTTCCATTCAGAATTGCTTGATCCTCAGAGTCCGCATATGTCTGAAAAAGAACAWTTACCGAATCAGGCAAAACATCGTACTCGTACCCTGAGAGATGGCGGAAAGATGATTTCCTGAGTTGGATCGTATTTTGGAAAGTCACTGAACGAAAGTAGCTTTTCGTATCCTTCATCCTCATCGCTAGATGATTTGTCTTTACAACACCCTCCTCCATTTTTATTTCCTCCACAACATCCACCACTTTCCGGAGAGAAACTGTAGAGAGCCTCAAGAATTGGACGATAACCAGTACAACGACACAAATTGGCACGAATAGCTGCATTGATCTGATCAATCGAAGGATCCGGGTGATTACGGAGAAGAGCATACGCAGACATCACAAATCCAGGGGAACAGAAACCACCTGGAAATGTTTAGTTTTTGGAAAAAAATAAAAATATAACTCACATTGTAATGCATGTCCTCTAGCCATCCTATCCTGGATCGGATGAATCTTTTCTCGACTTCCAACGCCTTCTACAGTAATCACAAATGTTCGATGAACATGAAAAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>253 220 148 82 81 42 40 36 33 29 26 10</canonical_bands>
                <polymorphic_bands>262 253 148 82 81 40 36 33 29 26 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCCTGATGAAATAACATTCTTG</pcr_primer_p1>
		<pcr_primer_p2>GATGAAGGATACGAAAAGCTACT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GTCCTGATGAAATAACATTCTTGCCCTCTCTAGATTGCTTGAATTGAGTTAAATTCTTTGGAAGCGTTAGTTCGACACGGTTTCCATTCAGAATTGCTTGATCCTCAGAGTCCGCATATGTCTGAAAAAGAACAATTACCGAATCAGGCAAAACATCGTACTCGTACCCTGAGAGATGGCGGAAAGATGATTTCCTGAGTTGGATCGTATTTTGGAAAGTCACTGAACGAAAGTAGCTTTTCGTATCCTTCATC</canonical_amplicon>
		<polymorphic_amplicon>GTCCTGATGAAATAACATTCTTGCCCTCTCTAGATTGCTTGAATTGAGTTAAATTCTTTGGAAGCGTTAGTTCGACACGGTTTCCATTCAGAATTGCTTGATCCTCAGAGTCCGCATATGTCTGAAAAAGAACAWTTACCGAATCAGGCAAAACATCGTACTCGTACCCTGAGAGATGGCGGAAAGATGATTTCCTGAGTTGGATCGTATTTTGGAAAGTCACTGAACGAAAGTAGCTTTTCGTATCCTTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22392</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>27080</contig_pos>
        <strand>+</strand>
        <context>TGTCTGAAAA[A/T]GAACAWTTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTTTCCATTCAGAATTGCTTGATCCTCAGAGTCCGCATATGTCTGAAAA</left_flank>
        <right_flank>GAACAATTACCGAATCAGGCAAAACATCGTACTCGTACCCTGAGAGATGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTAAATTGTTTTTGTTGAACTTAAATCGGAGCTGAAAAATTTTACAGCAAAGTTGGCTACTTGTGGAGACGAAAATTTTCGGAAAAGTTCTGATACTGCAATTCCAATACTTTCATGTAGATGACGGGTAAGCGTGTCAGAAAATCCTAAAAATCAGATTTCTTTTTAAAAAGACACTGATCTCATACTTTGAATACTAACGGCTGCTCCTATGTGCACTGAATCGGTTTCCACTTTGATTTCGTTAAATTCTCGCACATATTTTGTAGAAATCCATTTTTCTGAAACACATGCTGGGCTCTGAGAGGTTGCTGAAAACGGAAGAATAAAATTATAACATTATGTTTTTCTCACTTAATCTTGTGATAAGTCCTGATGAAATAACATTCTTGCCCTCTCTAGATTGCTTGAATTGAGTTAAATTCTTTGGAAGCGTTAGTTCGACACGGTTTCCATTCAGAATTGCTTGATCCTCAGAGTCCGCATATGTCTGAAAAAGAACAATTACCGAATCAGGCAAAACATCGTACTCGTACCCTGAGAGATGGCGGAAAGATGATTTCCTGAGTTGGATCGTATTTTGGAAAGTCACTGAACGAAAGTAGCTTTTCGTATCCTTCATCCTCATCGCTAGATGATTTGTCTTTACAACACCCTCCTCCATTTTTATTTCCTCCACAACATCCACCACTTTCCGGAGAGAAACTGTAGAGAGCCTCAAGAATTGGACGATAACCAGTACAACGACACAAATTGGCACGAATAGCTGCATTGATCTGATCAATCGAAGGATCCGGGTGATTACGGAGAAGAGCATACGCAGACATCACAAATCCAGGGGAACAGAAACCACCTGGAAATGTTTAGTTTTTGGAAAAAAATAAAAATATAACTCACATTGTAATGCATGTCCTCTAGCCATCCTATCCTGGATCGGATGAATCTTTTCTCGACTTCCAACGCCTTCTACAGTAATCACAAATGTTCGATGAACATGA</canonical>
            <polymorphic>GTCTAAATTGTTTTTGTTGAACTTAAATCGGAGCTGAAAAATTTTACAGCAAAGTTGGCTACTTGTGGAGACGAAAATTTTCGGAAAAGTTCTGATACTGCAATTCCAATACTTTCATGTAGATGACGGGTAAGCGTGTCAGAAAATCCTAAAAATCAGATTTCTTTTTAAAAAGACACTGATCTCATACTTTGAATACTAACGGCTGCTCCTATGTGCACTGAATCGGTTTCCACTTTGATTTCGTTAAATTCTCGCACATATTTTGTAGAAATCCATTTTTCTGAAACACATGCTGGGCTCTGAGAGGTTGCTGAAAACGGAAGAATAAAATTATAACATTATGTTTTTCTCACTTAATCTTGTGATAAGTCCTGATGAAATAACATTCTTGCCCTCTCTAGATTGCTTGAATTGAGTTAAATTCTTTGGAAGCGTTAGTTCGACACGGTTTCCATTCAGAATTGCTTGATCCTCAGAGTCCGCATATGTCTGAAAAWGAACAATTACCGAATCAGGCAAAACATCGTACTCGTACCCTGAGAGATGGCGGAAAGATGATTTCCTGAGTTGGATCGTATTTTGGAAAGTCACTGAACGAAAGTAGCTTTTCGTATCCTTCATCCTCATCGCTAGATGATTTGTCTTTACAACACCCTCCTCCATTTTTATTTCCTCCACAACATCCACCACTTTCCGGAGAGAAACTGTAGAGAGCCTCAAGAATTGGACGATAACCAGTACAACGACACAAATTGGCACGAATAGCTGCATTGATCTGATCAATCGAAGGATCCGGGTGATTACGGAGAAGAGCATACGCAGACATCACAAATCCAGGGGAACAGAAACCACCTGGAAATGTTTAGTTTTTGGAAAAAAATAAAAATATAACTCACATTGTAATGCATGTCCTCTAGCCATCCTATCCTGGATCGGATGAATCTTTTCTCGACTTCCAACGCCTTCTACAGTAATCACAAATGTTCGATGAACATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCCTGATGAAATAACATTCTTG</pcr_primer_p1>
		<pcr_primer_p2>GATGAAGGATACGAAAAGCTACT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GTCCTGATGAAATAACATTCTTGCCCTCTCTAGATTGCTTGAATTGAGTTAAATTCTTTGGAAGCGTTAGTTCGACACGGTTTCCATTCAGAATTGCTTGATCCTCAGAGTCCGCATATGTCTGAAAAAGAACAATTACCGAATCAGGCAAAACATCGTACTCGTACCCTGAGAGATGGCGGAAAGATGATTTCCTGAGTTGGATCGTATTTTGGAAAGTCACTGAACGAAAGTAGCTTTTCGTATCCTTCATC</canonical_amplicon>
		<polymorphic_amplicon>GTCCTGATGAAATAACATTCTTGCCCTCTCTAGATTGCTTGAATTGAGTTAAATTCTTTGGAAGCGTTAGTTCGACACGGTTTCCATTCAGAATTGCTTGATCCTCAGAGTCCGCATATGTCTGAAAAWGAACAATTACCGAATCAGGCAAAACATCGTACTCGTACCCTGAGAGATGGCGGAAAGATGATTTCCTGAGTTGGATCGTATTTTGGAAAGTCACTGAACGAAAGTAGCTTTTCGTATCCTTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22393</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>26876</contig_pos>
        <strand>+</strand>
        <context>GAAACACATG[C/T]TGGGCTCTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTAAATTCTCGCACATATTTTGTAGAAATCCATTTTTCTGAAACACATG</left_flank>
        <right_flank>TGGGCTCTGAGAGGTTGCTGAAAACGGAAGAATAAAATTATAACATTATG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTACATCACTTTTCGAGAAAGAAGCGCATACAATTGTTTCAGTTTCATAAATCTTTCTTTCCAAAAATTCATCCATTTCCACCTTTACAAGTTCTCCAGATTGAGTCAGCACGGTGATTCGAGCATTCAAAACACTCAGAACAAGAAGTACATCGCTTACAACTGGTGCTGATTTTGCTGATACAACAACCGCTCCAGACCAAGTCTAAATTGTTTTTGTTGAACTTAAATCGGAGCTGAAAAATTTTACAGCAAAGTTGGCTACTTGTGGAGACGAAAATTTTCGGAAAAGTTCTGATACTGCAATTCCAATACTTTCATGTAGATGACGGGTAAGCGTGTCAGAAAATCCTAAAAATCAGATTTCTTTTTAAAAAGACACTGATCTCATACTTTGAATACTAACGGCTGCTCCTATGTGCACTGAATCGGTTTCCACTTTGATTTCGTTAAATTCTCGCACATATTTTGTAGAAATCCATTTTTCTGAAACACATGCTGGGCTCTGAGAGGTTGCTGAAAACGGAAGAATAAAATTATAACATTATGTTTTTCTCACTTAATCTTGTGATAAGTCCTGATGAAATAACATTCTTGCCCTCTCTAGATTGCTTGAATTGAGTTAAATTCTTTGGAAGCGTTAGTTCGACACGGTTTCCATTCAGAATTGCTTGATCCTCAGAGTCCGCATATGTCTGAAAAAGAACAATTACCGAATCAGGCAAAACATCGTACTCGTACCCTGAGAGATGGCGGAAAGATGATTTCCTGAGTTGGATCGTATTTTGGAAAGTCACTGAACGAAAGTAGCTTTTCGTATCCTTCATCCTCATCGCTAGATGATTTGTCTTTACAACACCCTCCTCCATTTTTATTTCCTCCACAACATCCACCACTTTCCGGAGAGAAACTGTAGAGAGCCTCAAGAATTGGACGATAACCAGTACAACGACACAAATTGGCACGAATAGCTGCATTGATCTGATCAATCGAAGGATC</canonical>
            <polymorphic>CTTACATCACTTTTCGAGAAAGAAGCGCATACAATTGTTTCAGTTTCATAAATCTTTCTTTCCAAAAATTCATCCATTTCCACCTTTACAAGTTCTCCAGATTGAGTCAGCACGGTGATTCGAGCATTCAAAACACTCAGAACAAGAAGTACATCGCTTACAACTGGTGCTGATTTTGCTGATACAACAACCGCTCCAGACCAAGTCTAAATTGTTTTTGTTGAACTTAAATCGGAGCTGAAAAATTTTACAGCAAAGTTGGCTACTTGTGGAGACGAAAATTTTCGGAAAAGTTCTGATACTGCAATTCCAATACTTTCATGTAGATGACGGGTAAGCGTGTCAGAAAATCCTAAAAATCAGATTTCTTTTTAAAAAGACACTGATCTCATACTTTGAATACTAACGGCTGCTCCTATGTGCACTGAATCGGTTTCCACTTTGATTTCGTTAAATTCTCGCACATATTTTGTAGAAATCCATTTTTCTGAAACACATGYTGGGCTCTGAGAGGTTGCTGAAAACGGAAGAATAAAATTATAACATTATGTTTTTCTCACTTAATCTTGTGATAAGTCCTGATGAAATAACATTCTTGCCCTCTCTAGATTGCTTGAATTGAGTTAAATTCTTTGGAAGCGTTAGTTCGACACGGTTTCCATTCAGAATTGCTTGATCCTCAGAGTCCGCATATGTCTGAAAAAGAACAATTACCGAATCAGGCAAAACATCGTACTCGTACCCTGAGAGATGGCGGAAAGATGATTTCCTGAGTTGGATCGTATTTTGGAAAGTCACTGAACGAAAGTAGCTTTTCGTATCCTTCATCCTCATCGCTAGATGATTTGTCTTTACAACACCCTCCTCCATTTTTATTTCCTCCACAACATCCACCACTTTCCGGAGAGAAACTGTAGAGAGCCTCAAGAATTGGACGATAACCAGTACAACGACACAAATTGGCACGAATAGCTGCATTGATCTGATCAATCGAAGGATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGTCAGAAAATCCTAAAAATCA</pcr_primer_p1>
		<pcr_primer_p2>TTCATCAGGACTTATCACAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTGTCAGAAAATCCTAAAAATCAGATTTCTTTTTAAAAAGACACTGATCTCATACTTTGAATACTAACGGCTGCTCCTATGTGCACTGAATCGGTTTCCACTTTGATTTCGTTAAATTCTCGCACATATTTTGTAGAAATCCATTTTTCTGAAACACATGCTGGGCTCTGAGAGGTTGCTGAAAACGGAAGAATAAAATTATAACATTATGTTTTTCTCACTTAATCTTGTGATAAGTCCTGATGAA</canonical_amplicon>
		<polymorphic_amplicon>GTGTCAGAAAATCCTAAAAATCAGATTTCTTTTTAAAAAGACACTGATCTCATACTTTGAATACTAACGGCTGCTCCTATGTGCACTGAATCGGTTTCCACTTTGATTTCGTTAAATTCTCGCACATATTTTGTAGAAATCCATTTTTCTGAAACACATGYTGGGCTCTGAGAGGTTGCTGAAAACGGAAGAATAAAATTATAACATTATGTTTTTCTCACTTAATCTTGTGATAAGTCCTGATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22394</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>27815</contig_pos>
        <strand>+</strand>
        <context>GGGTCCACAT[A/T]CTCTTCTCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCACATTTGTTTCTCAGATAATAGGCGAGAGTAAGTTCAGGGTCCACAT</left_flank>
        <right_flank>CTCTTCTCTCACATCTTTTCCATTCACATTGAAAAATATTCCAGTCTGAG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCAGTACAACGACACAAATTGGCACGAATAGCTGCATTGATCTGATCAATCGAAGGATCCGGGTGATTACGGAGAAGAGCATACGCAGACATCACAAATCCAGGGGAACAGAAACCACCTGGAAATGTTTAGTTTTTGGAAAAAAATAAAAATATAACTCACATTGTAATGCATGTCCTCTAGCCATCCTATCCTGGATCGGATGAATCTTTTCTCGACTTCCAACGCCTTCTACAGTAATCACAAATGTTCGATGAACATGAAAAAGAGGAACAAGACATGCGTTGACTGCTCTATAAACTGCCTTGTTCTCTCCATCATCCCATATCCCAAGTACAACTGTACACGATCCACACACGCCTTCTTCACATCCCAGTTTTGTTCCTCGAAGGCCCACTGGAATGTTTTTTTTTTAAATCAAAACGTTTTAGGGAACTCTATTGAAAACTCACATTTGTTTCTCAGATAATAGGCGAGAGTAAGTTCAGGGTCCACATACTCTTCTCTCACATCTTTTCCATTCACATTGAAAAATATTCCAGTCTGAGGTAACATCTGAGAAAAAATTAGAATAAAAAGAATCGTACGACATTAGGACTGGTCTTCAGCTAACTTTTACTAGGATACGGGTCAGTTCTAGTTGGACGGTTAATGTGAGAAGAGCAAATATTTGTGAGAGATTGAATGTAGTTAGATGCGAACAAAAAAAACAGAAAAAACTGAAGGTCCCAATTTCATTTGGTAAATAATATAGAGGTAGAAGAAATCCAAAAAAAAACAAACAATTTTTATAAAAAAGTGTTTTGGTTGAGATGGCAATCAAATCAATGATGATAATTGTGTCGTTCAAAGTAAATATCTTCAGTTTTTAACACCCTTCCAAGCGTGACCATGTTATCAGTTCTATTATCAGAAGTTGTCTGTTTGTCTTGTTTAATAATGGATGATTTATTGGCTCGATCAACCGGTCATCTTTTCTGAAAACTTACAAATGTTTG</canonical>
            <polymorphic>AACCAGTACAACGACACAAATTGGCACGAATAGCTGCATTGATCTGATCAATCGAAGGATCCGGGTGATTACGGAGAAGAGCATACGCAGACATCACAAATCCAGGGGAACAGAAACCACCTGGAAATGTTTAGTTTTTGGAAAAAAATAAAAATATAACTCACATTGTAATGCATGTCCTCTAGCCATCCTATCCTGGATCGGATGAATCTTTTCTCGACTTCCAACGCCTTCTACAGTAATCACAAATGTTCGATGAACATGAAAAAGAGGAACAAGACATGCGTTGACTGCTCTATAAACTGCCTTGTTCTCTCCATCATCCCATATCCCAAGTACAACTGTACACGATCCACACACGCCTTCTTCACATCCCAGTTTTGTTCCTCGAAGGCCCACTGGAATGTTTTTTTTTTAAATCAAAACGTTTTAGGGAACTCTATTGAAAACTCACATTTGTTTCTCAGATAATAGGCGAGAGTAAGTTCAGGGTCCACATWCTCTTCTCTCACATCTTTTCCATTCACATTGAAAAATATTCCAGTCTGAGGTAACATCTGAGAAAAAATTAGAATAAAAAGAATCGTACGACATTAGGACTGGTCTTCAGCTAACTTTTACTAGGATACGGGTCAGTTCTAGTTGGACGGTTAATGTGAGAAGAGCAAATATTTGTGAGAGATTGAATGTAGTTAGATGCGAACAAAAAAAACAGAAAAAACTGAAGGTCCCAATTTCATTTGGTAAATAATATAGAGGTAGAAGAAATCCAAAAAAAAACAAACAATTTTTATAAAAAAGTGTTTTGGTTGAGATGGCAATCAAATCAATGATGATAATTGTGTCGTTCAAAGTAAATATCTTCAGTTTTTAACACCCTTCCAAGCGTGACCATGTTATCAGTTCTATTATCAGAAGTTGTCTGTTTGTCTTGTTTAATAATGGATGATTTATTGGCTCGATCAACCGGTCATCTTTTCTGAAAACTTACAAATGTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACGTTTTAGGGAACTCTATTG</pcr_primer_p1>
		<pcr_primer_p2>TATTTGCTCTTCTCACATTAACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAACGTTTTAGGGAACTCTATTGAAAACTCACATTTGTTTCTCAGATAATAGGCGAGAGTAAGTTCAGGGTCCACATACTCTTCTCTCACATCTTTTCCATTCACATTGAAAAATATTCCAGTCTGAGGTAACATCTGAGAAAAAATTAGAATAAAAAGAATCGTACGACATTAGGACTGGTCTTCAGCTAACTTTTACTAGGATACGGGTCAGTTCTAGTTGGACGGTTAATGTGAGAAGAGCAAATA</canonical_amplicon>
		<polymorphic_amplicon>AAACGTTTTAGGGAACTCTATTGAAAACTCACATTTGTTTCTCAGATAATAGGCGAGAGTAAGTTCAGGGTCCACATWCTCTTCTCTCACATCTTTTCCATTCACATTGAAAAATATTCCAGTCTGAGGTAACATCTGAGAAAAAATTAGAATAAAAAGAATCGTACGACATTAGGACTGGTCTTCAGCTAACTTTTACTAGGATACGGGTCAGTTCTAGTTGGACGGTTAATGTGAGAAGAGCAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22395</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>47109</contig_pos>
        <strand>+</strand>
        <context>CTGATTCTCT[C/T]CGTCTTACAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTTCTTCTTCTTCTTCTTGTGCTTCTTCTTCCTATTTTCTGATTCTCT</left_flank>
        <right_flank>CGTCTTACACACTATTTCTACCTTGTTTTCAGAAAAGAGTGTTTTATCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCGTGTTTAGGATAGATGGGGAGATGGGAACGGGTTAATTTGACACCCGTCTGAAAATCCATGAATCATTTCAAATCGACTTCCGGGTTAAAGCTATAAACGGGGATATGACTTGAGGACCTAGAAACTGCAAGTGGCCCTTAAAAAGATAATTCCAGAGATCTCTGGTGAAACTTAATAGAAAGTACATGTTATGGACCAACCCGTCAGACAATTTTGACATGTTATTGTCTCGTCTTTCAATTTTTGCTGTCAGGGACCTTCTTTTTTTCATCTCTCAAAGTCCCCAAATGACGAAACAAAATAGGGCCTGTTCCAATTCCCAAAGTCACCAAAAAATCTCTTACTTTTTGCTTTTTTTCTTCCAAACCAATCCTCTAAAGGAATGCCGTCCGTGTCTCCTTTTCGTGTCTTTTCCGCCCCCCCCCCCCCCGTATGTCAGGCGCGGCTTTTCTTCTTCTTCTTCTTGTGCTTCTTCTTCCTATTTTCTGATTCTCTCCGTCTTACACACTATTTCTACCTTGTTTTCAGAAAAGAGTGTTTTATCAGCGGAGTACGCAGCGTGGCGGTCTTCTGCAGGGCTCCGCCCATTTTTCGACAACATGTCATCGGCGGCTCAACTACTGCTGGATTCGGCGGTGCGAGACGACGACGATCCACTTCTTTATCATCTGAATGCCAGTCTTCTTGAAGCGGCGAAAGATGGAGTCAACACTTCACTGAAGGATATTCTATCTGAAGTCCAGGCGCATAATTTATTCAACGACACTTTCTACGGACCCGGTGGAGCCATGGAGTCTACACCCGGAAGGTATGGATTTGAGTTTTTAGGAACCTGAGAATTTGAATAATAGCTTTTATAATAGATCAAAAAATTGATATTGTCGGGAATTGATTCCGAGATGAAGATGGGTTCCAAAAGTTTTCTTGTTGCACACACAGTCTAATAAATAGAGCGCCCCTCTAGCCTTCAACTCTGAGCCAATTTATATCGGTTCC</canonical>
            <polymorphic>CGCGTGTTTAGGATAGATGGGGAGATGGGAACGGGTTAATTTGACACCCGTCTGAAAATCCATGAATCATTTCAAATCGACTTCCGGGTTAAAGCTATAAACGGGGATATGACTTGAGGACCTAGAAACTGCAAGTGGCCCTTAAAAAGATAATTCCAGAGATCTCTGGTGAAACTTAATAGAAAGTACATGTTATGGACCAACCCGTCAGACAATTTTGACATGTTATTGTCTCGTCTTTCAATTTTTGCTGTCAGGGACCTTCTTTTTTTCATCTCTCAAAGTCCCCAAATGACGAAACAAAATAGGGCCTGTTCCAATTCCCAAAGTCACCAAAAAATCTCTTACTTTTTGCTTTTTTTCTTCCAAACCAATCCTCTAAAGGAATGCCGTCCGTGTCTCCTTTTCGTGTCTTTTCCGCCCCCCCCCCCCCCGTATGTCAGGCGCGGCTTTTCTTCTTCTTCTTCTTGTGCTTCTTCTTCCTATTTTCTGATTCTCTYCGTCTTACACACTATTTCTACCTTGTTTTCAGAAAAGAGTGTTTTATCAGCGGAGTACGCAGCGTGGCGGTCTTCTGCAGGGCTCCGCCCATTTTTCGACAACATGTCATCGGCGGCTCAACTACTGCTGGATTCGGCGGTGCGAGACGACGACGATCCACTTCTTTATCATCTGAATGCCAGTCTTCTTGAAGCGGCGAAAGATGGAGTCAACACTTCACTGAAGGATATTCTATCTGAAGTCCAGGCGCATAATTTATTCAACGACACTTTCTACGGACCCGGTGGAGCCATGGAGTCTACACCCGGAAGGTATGGATTTGAGTTTTTAGGAACCTGAGAATTTGAATAATAGCTTTTATAATAGATCAAAAAATTGATATTGTCGGGAATTGATTCCGAGATGAAGATGGGTTCCAAAAGTTTTCTTGTTGCACACACAGTCTAATAAATAGAGCGCCCCTCTAGCCTTCAACTCTGAGCCAATTTATATCGGTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTCTCCTTTTCGTGTCTTT</pcr_primer_p1>
		<pcr_primer_p2>CGAATCCAGCAGTAGTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GTGTCTCCTTTTCGTGTCTTTTCCGCCCCCCCCCCCCCCGTATGTCAGGCGCGGCTTTTCTTCTTCTTCTTCTTGTGCTTCTTCTTCCTATTTTCTGATTCTCTCCGTCTTACACACTATTTCTACCTTGTTTTCAGAAAAGAGTGTTTTATCAGCGGAGTACGCAGCGTGGCGGTCTTCTGCAGGGCTCCGCCCATTTTTCGACAACATGTCATCGGCGGCTCAACTACTGCTGGATTCG</canonical_amplicon>
		<polymorphic_amplicon>GTGTCTCCTTTTCGTGTCTTTTCCGCCCCCCCCCCCCCCGTATGTCAGGCGCGGCTTTTCTTCTTCTTCTTCTTGTGCTTCTTCTTCCTATTTTCTGATTCTCTYCGTCTTACACACTATTTCTACCTTGTTTTCAGAAAAGAGTGTTTTATCAGCGGAGTACGCAGCGTGGCGGTCTTCTGCAGGGCTCCGCCCATTTTTCGACAACATGTCATCGGCGGCTCAACTACTGCTGGATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22396</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>84077</contig_pos>
        <strand></strand>
        <context>ACAGACGGCG[G/C]CGCCAAGCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CAGGACACCAACAACGACCACTGTCGAGTGGACCAACACCACAGACGGCG</left_flank>
        <right_flank>CGCCAAGCAGTGAATGGTTACAGGGATATGGAATGGTCCGTCGCAAGAAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAAAAGAACAATGGGGTTGCAAATGAGTTTTTCTGCAAAAGAAGCGAAGATCAGGGCCATTTGACATATAAACCAGGTAGTTAAATTTCGAAGGACGGAAACAAAGGGCATTTCTTGAAAGATCAAGAGTCTATGAGCACCAAATGCTTGAGAAAAAACGCAAAAAATTCACCGTGTTTCATCTAATCGAAGCCCACCCGAATCGTCAACTTTGAGCTCAATTAACTCGATTGCTGTGAAATATATCAAACATTTGTCAACTGATAAATTGCTCATCATAATATCATCAGTATTTATGTCAGTTGACCACATGTTGGCATATTTCAAAGGAATCGAGATAATTGACCCAAACGAAGTGCTCTTGGCTGTGACCTGTGATGACTTCACTTTTGGACAGGATGTATGTCTTGAATCTTATAGCTTTTTCGGATTTTAAAATTCTATTTTCCAGGACACCAACAACGACCACTGTCGAGTGGACCAACACCACAGACGGCGGCGCCAAGCAGTGAATGGTTACAGGGATATGGAATGGTCCGTCGCAAGAACCTTCCGTCGAGTTCAGCCCATAAGATTTCATTGGAATAACGCTTTTGATTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTCTACAAAGTCTGTCACCGTGACAACGGGGTTCATAACAATCAACAAATTTTTGGCTGAAAGCATTTTTTGGGGTTTTTGTACAGGGTGGCGCAGAATCACCCGGGCTGATAAAAACGAGTGTATCCTTAGACATAAGTGTCTTGGAAGCATGAAAATTGGTAGAGATATAATTTTTGTTTGATTTCAAACTACTGAAGTTTTCAAAGCGATTCCTCATGTCAAGGTGTTCCTATGATTGCCCAAAAAAATAATAGCTTGTTTTTCCTTGCCCACAGTTTTTTTTCATGAGATGAAGCAACTTTGACAAGTGAAAACTCAGCTCAAAATTGATCAAAAAATTTGAAATTTGGCTTTAAAAAATTTA</canonical>
            <polymorphic>TTAAAAGAACAATGGGGTTGCAAATGAGTTTTTCTGCAAAAGAAGCGAAGATCAGGGCCATTTGACATATAAACCAGGTAGTTAAATTTCGAAGGACGGAAACAAAGGGCATTTCTTGAAAGATCAAGAGTCTATGAGCACCAAATGCTTGAGAAAAAACGCAAAAAATTCACCGTGTTTCATCTAATCGAAGCCCACCCGAATCGTCAACTTTGAGCTCAATTAACTCGATTGCTGTGAAATATATCAAACATTTGTCAACTGATAAATTGCTCATCATAATATCATCAGTATTTATGTCAGTTGACCACATGTTGGCATATTTCAAAGGAATCGAGATAATTGACCCAAACGAAGTGCTCTTGGCTGTGACCTGTGATGACTTCACTTTTGGACAGGATGTATGTCTTGAATCTTATAGCTTTTTCGGATTTTAAAATTCTATTTTCCAGGACACCAACAACGACCACTGTCGAGTGGACCAACACCACAGACGGCGSCGCCAAGCAGTGAATGGTTACAGGGATATGGAATGGTCCGTCGCAAGAACCTTCCGTCGAGTTCAGCCCATAAGATTTCATTGGAATAACGCTTTTGATTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTCTACAAAGTCTGTCACCGTGACAACGGGGTTCATAACAATCAACAAATTTTTGGCTGAAAGCATTTTTTGGGGTTTTTGTACAGGGTGGCGCAGAATCACCCGGGCTGATAAAAACGAGTGTATCCTTAGACATAAGTGTCTTGGAAGCATGAAAATTGGTAGAGATATAATTTTTGTTTGATTTCAAACTACTGAAGTTTTCAAAGCGATTCCTCATGTCAAGGTGTTCCTATGATTGCCCAAAAAAATAATAGCTTGTTTTTCCTTGCCCACAGTTTTTTTTCATGAGATGAAGCAACTTTGACAAGTGAAAACTCAGCTCAAAATTGATCAAAAAATTTGAAATTTGGCTTTAAAAAATTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 274 224</canonical_bands>
                <polymorphic_bands>726 274</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCGCC</site>
                <isoschizomers>
                    <enzyme>BbeI</enzyme>
                    <enzyme>EgeI</enzyme>
                    <enzyme>EheI</enzyme>
                    <enzyme>KasI</enzyme>
                    <enzyme>Mly113I</enzyme>
                    <enzyme>NarI</enzyme>
                    <enzyme>SfoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAATTCTATTTTCCAGGACAC</pcr_primer_p1>
		<pcr_primer_p2>AAATTTGTTGATTGTTATGAACC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAAAATTCTATTTTCCAGGACACCAACAACGACCACTGTCGAGTGGACCAACACCACAGACGGCGGCGCCAAGCAGTGAATGGTTACAGGGATATGGAATGGTCCGTCGCAAGAACCTTCCGTCGAGTTCAGCCCATAAGATTTCATTGGAATAACGCTTTTGATTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTCTACAAAGTCTGTCACCGTGACAACGGGGTTCATAACAATCAACAAATTT</canonical_amplicon>
		<polymorphic_amplicon>TAAAATTCTATTTTCCAGGACACCAACAACGACCACTGTCGAGTGGACCAACACCACAGACGGCGSCGCCAAGCAGTGAATGGTTACAGGGATATGGAATGGTCCGTCGCAAGAACCTTCCGTCGAGTTCAGCCCATAAGATTTCATTGGAATAACGCTTTTGATTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTCTACAAAGTCTGTCACCGTGACAACGGGGTTCATAACAATCAACAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22400</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>84155</contig_pos>
        <strand></strand>
        <context>CCATAAGATT[T/C]CATTGGAAKA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATGGAATGGTCCGTCGCAAGAACCTTCCGTCGAGTTCAGCCCATAAGATT</left_flank>
        <right_flank>CATTGGAATAACGCTTTTGATTTCTTATGTTCACCTATTTTTGTATTTTA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTTAAATTTCGAAGGACGGAAACAAAGGGCATTTCTTGAAAGATCAAGAGTCTATGAGCACCAAATGCTTGAGAAAAAACGCAAAAAATTCACCGTGTTTCATCTAATCGAAGCCCACCCGAATCGTCAACTTTGAGCTCAATTAACTCGATTGCTGTGAAATATATCAAACATTTGTCAACTGATAAATTGCTCATCATAATATCATCAGTATTTATGTCAGTTGACCACATGTTGGCATATTTCAAAGGAATCGAGATAATTGACCCAAACGAAGTGCTCTTGGCTGTGACCTGTGATGACTTCACTTTTGGACAGGATGTATGTCTTGAATCTTATAGCTTTTTCGGATTTTAAAATTCTATTTTCCAGGACACCAACAACGACCACTGTCGAGTGGACCAACACCACAGACGGCGGCGCCAAGCAGTGAATGGTTACAGGGATATGGAATGGTCCGTCGCAAGAACCTTCCGTCGAGTTCAGCCCATAAGATTTCATTGGAATAACGCTTTTGATTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTCTACAAAGTCTGTCACCGTGACAACGGGGTTCATAACAATCAACAAATTTTTGGCTGAAAGCATTTTTTGGGGTTTTTGTACAGGGTGGCGCAGAATCACCCGGGCTGATAAAAACGAGTGTATCCTTAGACATAAGTGTCTTGGAAGCATGAAAATTGGTAGAGATATAATTTTTGTTTGATTTCAAACTACTGAAGTTTTCAAAGCGATTCCTCATGTCAAGGTGTTCCTATGATTGCCCAAAAAAATAATAGCTTGTTTTTCCTTGCCCACAGTTTTTTTTCATGAGATGAAGCAACTTTGACAAGTGAAAACTCAGCTCAAAATTGATCAAAAAATTTGAAATTTGGCTTTAAAAAATTTAAGCCCAGTACAACGTTCTGCTCCAGTTTTACCTCCAGAATCCAAAAATTGAATGTCACGAAAATCCAATTATTCCCCC</canonical>
            <polymorphic>TAGTTAAATTTCGAAGGACGGAAACAAAGGGCATTTCTTGAAAGATCAAGAGTCTATGAGCACCAAATGCTTGAGAAAAAACGCAAAAAATTCACCGTGTTTCATCTAATCGAAGCCCACCCGAATCGTCAACTTTGAGCTCAATTAACTCGATTGCTGTGAAATATATCAAACATTTGTCAACTGATAAATTGCTCATCATAATATCATCAGTATTTATGTCAGTTGACCACATGTTGGCATATTTCAAAGGAATCGAGATAATTGACCCAAACGAAGTGCTCTTGGCTGTGACCTGTGATGACTTCACTTTTGGACAGGATGTATGTCTTGAATCTTATAGCTTTTTCGGATTTTAAAATTCTATTTTCCAGGACACCAACAACGACCACTGTCGAGTGGACCAACACCACAGACGGCGGCGCCAAGCAGTGAATGGTTACAGGGATATGGAATGGTCCGTCGCAAGAACCTTCCGTCGAGTTCAGCCCATAAGATTYCATTGGAATAACGCTTTTGATTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTCTACAAAGTCTGTCACCGTGACAACGGGGTTCATAACAATCAACAAATTTTTGGCTGAAAGCATTTTTTGGGGTTTTTGTACAGGGTGGCGCAGAATCACCCGGGCTGATAAAAACGAGTGTATCCTTAGACATAAGTGTCTTGGAAGCATGAAAATTGGTAGAGATATAATTTTTGTTTGATTTCAAACTACTGAAGTTTTCAAAGCGATTCCTCATGTCAAGGTGTTCCTATGATTGCCCAAAAAAATAATAGCTTGTTTTTCCTTGCCCACAGTTTTTTTTCATGAGATGAAGCAACTTTGACAAGTGAAAACTCAGCTCAAAATTGATCAAAAAATTTGAAATTTGGCTTTAAAAAATTTAAGCCCAGTACAACGTTCTGCTCCAGTTTTACCTCCAGAATCCAAAAATTGAATGTCACGAAAATCCAATTATTCCCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAATTCTATTTTCCAGGACAC</pcr_primer_p1>
		<pcr_primer_p2>AAATTTGTTGATTGTTATGAACC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAAAATTCTATTTTCCAGGACACCAACAACGACCACTGTCGAGTGGACCAACACCACAGACGGCGGCGCCAAGCAGTGAATGGTTACAGGGATATGGAATGGTCCGTCGCAAGAACCTTCCGTCGAGTTCAGCCCATAAGATTTCATTGGAATAACGCTTTTGATTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTCTACAAAGTCTGTCACCGTGACAACGGGGTTCATAACAATCAACAAATTT</canonical_amplicon>
		<polymorphic_amplicon>TAAAATTCTATTTTCCAGGACACCAACAACGACCACTGTCGAGTGGACCAACACCACAGACGGCGGCGCCAAGCAGTGAATGGTTACAGGGATATGGAATGGTCCGTCGCAAGAACCTTCCGTCGAGTTCAGCCCATAAGATTYCATTGGAATAACGCTTTTGATTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTCTACAAAGTCTGTCACCGTGACAACGGGGTTCATAACAATCAACAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22401</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>84164</contig_pos>
        <strand></strand>
        <context>TYCATTGGAA[T/G]AACGCTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TCCGTCGCAAGAACCTTCCGTCGAGTTCAGCCCATAAGATTTCATTGGAA</left_flank>
        <right_flank>AACGCTTTTGATTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTCT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGAAGGACGGAAACAAAGGGCATTTCTTGAAAGATCAAGAGTCTATGAGCACCAAATGCTTGAGAAAAAACGCAAAAAATTCACCGTGTTTCATCTAATCGAAGCCCACCCGAATCGTCAACTTTGAGCTCAATTAACTCGATTGCTGTGAAATATATCAAACATTTGTCAACTGATAAATTGCTCATCATAATATCATCAGTATTTATGTCAGTTGACCACATGTTGGCATATTTCAAAGGAATCGAGATAATTGACCCAAACGAAGTGCTCTTGGCTGTGACCTGTGATGACTTCACTTTTGGACAGGATGTATGTCTTGAATCTTATAGCTTTTTCGGATTTTAAAATTCTATTTTCCAGGACACCAACAACGACCACTGTCGAGTGGACCAACACCACAGACGGCGGCGCCAAGCAGTGAATGGTTACAGGGATATGGAATGGTCCGTCGCAAGAACCTTCCGTCGAGTTCAGCCCATAAGATTTCATTGGAATAACGCTTTTGATTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTCTACAAAGTCTGTCACCGTGACAACGGGGTTCATAACAATCAACAAATTTTTGGCTGAAAGCATTTTTTGGGGTTTTTGTACAGGGTGGCGCAGAATCACCCGGGCTGATAAAAACGAGTGTATCCTTAGACATAAGTGTCTTGGAAGCATGAAAATTGGTAGAGATATAATTTTTGTTTGATTTCAAACTACTGAAGTTTTCAAAGCGATTCCTCATGTCAAGGTGTTCCTATGATTGCCCAAAAAAATAATAGCTTGTTTTTCCTTGCCCACAGTTTTTTTTCATGAGATGAAGCAACTTTGACAAGTGAAAACTCAGCTCAAAATTGATCAAAAAATTTGAAATTTGGCTTTAAAAAATTTAAGCCCAGTACAACGTTCTGCTCCAGTTTTACCTCCAGAATCCAAAAATTGAATGTCACGAAAATCCAATTATTCCCCCATGCATGAA</canonical>
            <polymorphic>TTCGAAGGACGGAAACAAAGGGCATTTCTTGAAAGATCAAGAGTCTATGAGCACCAAATGCTTGAGAAAAAACGCAAAAAATTCACCGTGTTTCATCTAATCGAAGCCCACCCGAATCGTCAACTTTGAGCTCAATTAACTCGATTGCTGTGAAATATATCAAACATTTGTCAACTGATAAATTGCTCATCATAATATCATCAGTATTTATGTCAGTTGACCACATGTTGGCATATTTCAAAGGAATCGAGATAATTGACCCAAACGAAGTGCTCTTGGCTGTGACCTGTGATGACTTCACTTTTGGACAGGATGTATGTCTTGAATCTTATAGCTTTTTCGGATTTTAAAATTCTATTTTCCAGGACACCAACAACGACCACTGTCGAGTGGACCAACACCACAGACGGCGGCGCCAAGCAGTGAATGGTTACAGGGATATGGAATGGTCCGTCGCAAGAACCTTCCGTCGAGTTCAGCCCATAAGATTTCATTGGAAKAACGCTTTTGATTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTCTACAAAGTCTGTCACCGTGACAACGGGGTTCATAACAATCAACAAATTTTTGGCTGAAAGCATTTTTTGGGGTTTTTGTACAGGGTGGCGCAGAATCACCCGGGCTGATAAAAACGAGTGTATCCTTAGACATAAGTGTCTTGGAAGCATGAAAATTGGTAGAGATATAATTTTTGTTTGATTTCAAACTACTGAAGTTTTCAAAGCGATTCCTCATGTCAAGGTGTTCCTATGATTGCCCAAAAAAATAATAGCTTGTTTTTCCTTGCCCACAGTTTTTTTTCATGAGATGAAGCAACTTTGACAAGTGAAAACTCAGCTCAAAATTGATCAAAAAATTTGAAATTTGGCTTTAAAAAATTTAAGCCCAGTACAACGTTCTGCTCCAGTTTTACCTCCAGAATCCAAAAATTGAATGTCACGAAAATCCAATTATTCCCCCATGCATGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAATTCTATTTTCCAGGACAC</pcr_primer_p1>
		<pcr_primer_p2>AAATTTGTTGATTGTTATGAACC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAAAATTCTATTTTCCAGGACACCAACAACGACCACTGTCGAGTGGACCAACACCACAGACGGCGGCGCCAAGCAGTGAATGGTTACAGGGATATGGAATGGTCCGTCGCAAGAACCTTCCGTCGAGTTCAGCCCATAAGATTTCATTGGAATAACGCTTTTGATTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTCTACAAAGTCTGTCACCGTGACAACGGGGTTCATAACAATCAACAAATTT</canonical_amplicon>
		<polymorphic_amplicon>TAAAATTCTATTTTCCAGGACACCAACAACGACCACTGTCGAGTGGACCAACACCACAGACGGCGGCGCCAAGCAGTGAATGGTTACAGGGATATGGAATGGTCCGTCGCAAGAACCTTCCGTCGAGTTCAGCCCATAAGATTTCATTGGAAKAACGCTTTTGATTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTCTACAAAGTCTGTCACCGTGACAACGGGGTTCATAACAATCAACAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22402</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>84214</contig_pos>
        <strand></strand>
        <context>TAATTATGTC[T/C]ACRAAGTCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAACGCTTTTGATTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTC</left_flank>
        <right_flank>ACAAAGTCTGTCACCGTGACAACGGGGTTCATAACAATCAACAAATTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCACCAAATGCTTGAGAAAAAACGCAAAAAATTCACCGTGTTTCATCTAATCGAAGCCCACCCGAATCGTCAACTTTGAGCTCAATTAACTCGATTGCTGTGAAATATATCAAACATTTGTCAACTGATAAATTGCTCATCATAATATCATCAGTATTTATGTCAGTTGACCACATGTTGGCATATTTCAAAGGAATCGAGATAATTGACCCAAACGAAGTGCTCTTGGCTGTGACCTGTGATGACTTCACTTTTGGACAGGATGTATGTCTTGAATCTTATAGCTTTTTCGGATTTTAAAATTCTATTTTCCAGGACACCAACAACGACCACTGTCGAGTGGACCAACACCACAGACGGCGGCGCCAAGCAGTGAATGGTTACAGGGATATGGAATGGTCCGTCGCAAGAACCTTCCGTCGAGTTCAGCCCATAAGATTTCATTGGAATAACGCTTTTGATTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTCTACAAAGTCTGTCACCGTGACAACGGGGTTCATAACAATCAACAAATTTTTGGCTGAAAGCATTTTTTGGGGTTTTTGTACAGGGTGGCGCAGAATCACCCGGGCTGATAAAAACGAGTGTATCCTTAGACATAAGTGTCTTGGAAGCATGAAAATTGGTAGAGATATAATTTTTGTTTGATTTCAAACTACTGAAGTTTTCAAAGCGATTCCTCATGTCAAGGTGTTCCTATGATTGCCCAAAAAAATAATAGCTTGTTTTTCCTTGCCCACAGTTTTTTTTCATGAGATGAAGCAACTTTGACAAGTGAAAACTCAGCTCAAAATTGATCAAAAAATTTGAAATTTGGCTTTAAAAAATTTAAGCCCAGTACAACGTTCTGCTCCAGTTTTACCTCCAGAATCCAAAAATTGAATGTCACGAAAATCCAATTATTCCCCCATGCATGAAATTTTCTGAGCCTATTATCATCTTCAGTCTTTATCTTTGTCTTGGCATCT</canonical>
            <polymorphic>GCACCAAATGCTTGAGAAAAAACGCAAAAAATTCACCGTGTTTCATCTAATCGAAGCCCACCCGAATCGTCAACTTTGAGCTCAATTAACTCGATTGCTGTGAAATATATCAAACATTTGTCAACTGATAAATTGCTCATCATAATATCATCAGTATTTATGTCAGTTGACCACATGTTGGCATATTTCAAAGGAATCGAGATAATTGACCCAAACGAAGTGCTCTTGGCTGTGACCTGTGATGACTTCACTTTTGGACAGGATGTATGTCTTGAATCTTATAGCTTTTTCGGATTTTAAAATTCTATTTTCCAGGACACCAACAACGACCACTGTCGAGTGGACCAACACCACAGACGGCGGCGCCAAGCAGTGAATGGTTACAGGGATATGGAATGGTCCGTCGCAAGAACCTTCCGTCGAGTTCAGCCCATAAGATTTCATTGGAATAACGCTTTTGATTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTCYACAAAGTCTGTCACCGTGACAACGGGGTTCATAACAATCAACAAATTTTTGGCTGAAAGCATTTTTTGGGGTTTTTGTACAGGGTGGCGCAGAATCACCCGGGCTGATAAAAACGAGTGTATCCTTAGACATAAGTGTCTTGGAAGCATGAAAATTGGTAGAGATATAATTTTTGTTTGATTTCAAACTACTGAAGTTTTCAAAGCGATTCCTCATGTCAAGGTGTTCCTATGATTGCCCAAAAAAATAATAGCTTGTTTTTCCTTGCCCACAGTTTTTTTTCATGAGATGAAGCAACTTTGACAAGTGAAAACTCAGCTCAAAATTGATCAAAAAATTTGAAATTTGGCTTTAAAAAATTTAAGCCCAGTACAACGTTCTGCTCCAGTTTTACCTCCAGAATCCAAAAATTGAATGTCACGAAAATCCAATTATTCCCCCATGCATGAAATTTTCTGAGCCTATTATCATCTTCAGTCTTTATCTTTGTCTTGGCATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAATTCTATTTTCCAGGACAC</pcr_primer_p1>
		<pcr_primer_p2>GCCAAAAATTTGTTGATTGT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TAAAATTCTATTTTCCAGGACACCAACAACGACCACTGTCGAGTGGACCAACACCACAGACGGCGGCGCCAAGCAGTGAATGGTTACAGGGATATGGAATGGTCCGTCGCAAGAACCTTCCGTCGAGTTCAGCCCATAAGATTTCATTGGAATAACGCTTTTGATTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTCTACAAAGTCTGTCACCGTGACAACGGGGTTCATAACAATCAACAAATTTTTGGC</canonical_amplicon>
		<polymorphic_amplicon>TAAAATTCTATTTTCCAGGACACCAACAACGACCACTGTCGAGTGGACCAACACCACAGACGGCGGCGCCAAGCAGTGAATGGTTACAGGGATATGGAATGGTCCGTCGCAAGAACCTTCCGTCGAGTTCAGCCCATAAGATTTCATTGGAATAACGCTTTTGATTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTCYACAAAGTCTGTCACCGTGACAACGGGGTTCATAACAATCAACAAATTTTTGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22403</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>84217</contig_pos>
        <strand></strand>
        <context>TTATGTCYAC[A/G]AAGTCTGTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCTTTTGATTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTCTAC</left_flank>
        <right_flank>AAGTCTGTCACCGTGACAACGGGGTTCATAACAATCAACAAATTTTTGGC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAATGCTTGAGAAAAAACGCAAAAAATTCACCGTGTTTCATCTAATCGAAGCCCACCCGAATCGTCAACTTTGAGCTCAATTAACTCGATTGCTGTGAAATATATCAAACATTTGTCAACTGATAAATTGCTCATCATAATATCATCAGTATTTATGTCAGTTGACCACATGTTGGCATATTTCAAAGGAATCGAGATAATTGACCCAAACGAAGTGCTCTTGGCTGTGACCTGTGATGACTTCACTTTTGGACAGGATGTATGTCTTGAATCTTATAGCTTTTTCGGATTTTAAAATTCTATTTTCCAGGACACCAACAACGACCACTGTCGAGTGGACCAACACCACAGACGGCGGCGCCAAGCAGTGAATGGTTACAGGGATATGGAATGGTCCGTCGCAAGAACCTTCCGTCGAGTTCAGCCCATAAGATTTCATTGGAATAACGCTTTTGATTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTCTACAAAGTCTGTCACCGTGACAACGGGGTTCATAACAATCAACAAATTTTTGGCTGAAAGCATTTTTTGGGGTTTTTGTACAGGGTGGCGCAGAATCACCCGGGCTGATAAAAACGAGTGTATCCTTAGACATAAGTGTCTTGGAAGCATGAAAATTGGTAGAGATATAATTTTTGTTTGATTTCAAACTACTGAAGTTTTCAAAGCGATTCCTCATGTCAAGGTGTTCCTATGATTGCCCAAAAAAATAATAGCTTGTTTTTCCTTGCCCACAGTTTTTTTTCATGAGATGAAGCAACTTTGACAAGTGAAAACTCAGCTCAAAATTGATCAAAAAATTTGAAATTTGGCTTTAAAAAATTTAAGCCCAGTACAACGTTCTGCTCCAGTTTTACCTCCAGAATCCAAAAATTGAATGTCACGAAAATCCAATTATTCCCCCATGCATGAAATTTTCTGAGCCTATTATCATCTTCAGTCTTTATCTTTGTCTTGGCATCTTTT</canonical>
            <polymorphic>CCAAATGCTTGAGAAAAAACGCAAAAAATTCACCGTGTTTCATCTAATCGAAGCCCACCCGAATCGTCAACTTTGAGCTCAATTAACTCGATTGCTGTGAAATATATCAAACATTTGTCAACTGATAAATTGCTCATCATAATATCATCAGTATTTATGTCAGTTGACCACATGTTGGCATATTTCAAAGGAATCGAGATAATTGACCCAAACGAAGTGCTCTTGGCTGTGACCTGTGATGACTTCACTTTTGGACAGGATGTATGTCTTGAATCTTATAGCTTTTTCGGATTTTAAAATTCTATTTTCCAGGACACCAACAACGACCACTGTCGAGTGGACCAACACCACAGACGGCGGCGCCAAGCAGTGAATGGTTACAGGGATATGGAATGGTCCGTCGCAAGAACCTTCCGTCGAGTTCAGCCCATAAGATTTCATTGGAATAACGCTTTTGATTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTCTACRAAGTCTGTCACCGTGACAACGGGGTTCATAACAATCAACAAATTTTTGGCTGAAAGCATTTTTTGGGGTTTTTGTACAGGGTGGCGCAGAATCACCCGGGCTGATAAAAACGAGTGTATCCTTAGACATAAGTGTCTTGGAAGCATGAAAATTGGTAGAGATATAATTTTTGTTTGATTTCAAACTACTGAAGTTTTCAAAGCGATTCCTCATGTCAAGGTGTTCCTATGATTGCCCAAAAAAATAATAGCTTGTTTTTCCTTGCCCACAGTTTTTTTTCATGAGATGAAGCAACTTTGACAAGTGAAAACTCAGCTCAAAATTGATCAAAAAATTTGAAATTTGGCTTTAAAAAATTTAAGCCCAGTACAACGTTCTGCTCCAGTTTTACCTCCAGAATCCAAAAATTGAATGTCACGAAAATCCAATTATTCCCCCATGCATGAAATTTTCTGAGCCTATTATCATCTTCAGTCTTTATCTTTGTCTTGGCATCTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAATTCTATTTTCCAGGACAC</pcr_primer_p1>
		<pcr_primer_p2>AGCCAAAAATTTGTTGATTG</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TAAAATTCTATTTTCCAGGACACCAACAACGACCACTGTCGAGTGGACCAACACCACAGACGGCGGCGCCAAGCAGTGAATGGTTACAGGGATATGGAATGGTCCGTCGCAAGAACCTTCCGTCGAGTTCAGCCCATAAGATTTCATTGGAATAACGCTTTTGATTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTCTACAAAGTCTGTCACCGTGACAACGGGGTTCATAACAATCAACAAATTTTTGGCT</canonical_amplicon>
		<polymorphic_amplicon>TAAAATTCTATTTTCCAGGACACCAACAACGACCACTGTCGAGTGGACCAACACCACAGACGGCGGCGCCAAGCAGTGAATGGTTACAGGGATATGGAATGGTCCGTCGCAAGAACCTTCCGTCGAGTTCAGCCCATAAGATTTCATTGGAATAACGCTTTTGATTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTCTACRAAGTCTGTCACCGTGACAACGGGGTTCATAACAATCAACAAATTTTTGGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22404</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>84233</contig_pos>
        <strand></strand>
        <context>TGTCACCGTG[A/G]CAACGGGGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTCACCTATTTTTGTATTTTAATTATGTCTACAAAGTCTGTCACCGTG</left_flank>
        <right_flank>CAACGGGGTTCATAACAATCAACAAATTTTTGGCTGAAAGCATTTTTTGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACGCAAAAAATTCACCGTGTTTCATCTAATCGAAGCCCACCCGAATCGTCAACTTTGAGCTCAATTAACTCGATTGCTGTGAAATATATCAAACATTTGTCAACTGATAAATTGCTCATCATAATATCATCAGTATTTATGTCAGTTGACCACATGTTGGCATATTTCAAAGGAATCGAGATAATTGACCCAAACGAAGTGCTCTTGGCTGTGACCTGTGATGACTTCACTTTTGGACAGGATGTATGTCTTGAATCTTATAGCTTTTTCGGATTTTAAAATTCTATTTTCCAGGACACCAACAACGACCACTGTCGAGTGGACCAACACCACAGACGGCGGCGCCAAGCAGTGAATGGTTACAGGGATATGGAATGGTCCGTCGCAAGAACCTTCCGTCGAGTTCAGCCCATAAGATTTCATTGGAATAACGCTTTTGATTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTCTACAAAGTCTGTCACCGTGACAACGGGGTTCATAACAATCAACAAATTTTTGGCTGAAAGCATTTTTTGGGGTTTTTGTACAGGGTGGCGCAGAATCACCCGGGCTGATAAAAACGAGTGTATCCTTAGACATAAGTGTCTTGGAAGCATGAAAATTGGTAGAGATATAATTTTTGTTTGATTTCAAACTACTGAAGTTTTCAAAGCGATTCCTCATGTCAAGGTGTTCCTATGATTGCCCAAAAAAATAATAGCTTGTTTTTCCTTGCCCACAGTTTTTTTTCATGAGATGAAGCAACTTTGACAAGTGAAAACTCAGCTCAAAATTGATCAAAAAATTTGAAATTTGGCTTTAAAAAATTTAAGCCCAGTACAACGTTCTGCTCCAGTTTTACCTCCAGAATCCAAAAATTGAATGTCACGAAAATCCAATTATTCCCCCATGCATGAAATTTTCTGAGCCTATTATCATCTTCAGTCTTTATCTTTGTCTTGGCATCTTTTTTCCTTTTTTTTCACC</canonical>
            <polymorphic>AAACGCAAAAAATTCACCGTGTTTCATCTAATCGAAGCCCACCCGAATCGTCAACTTTGAGCTCAATTAACTCGATTGCTGTGAAATATATCAAACATTTGTCAACTGATAAATTGCTCATCATAATATCATCAGTATTTATGTCAGTTGACCACATGTTGGCATATTTCAAAGGAATCGAGATAATTGACCCAAACGAAGTGCTCTTGGCTGTGACCTGTGATGACTTCACTTTTGGACAGGATGTATGTCTTGAATCTTATAGCTTTTTCGGATTTTAAAATTCTATTTTCCAGGACACCAACAACGACCACTGTCGAGTGGACCAACACCACAGACGGCGGCGCCAAGCAGTGAATGGTTACAGGGATATGGAATGGTCCGTCGCAAGAACCTTCCGTCGAGTTCAGCCCATAAGATTTCATTGGAATAACGCTTTTGATTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTCTACAAAGTCTGTCACCGTGRCAACGGGGTTCATAACAATCAACAAATTTTTGGCTGAAAGCATTTTTTGGGGTTTTTGTACAGGGTGGCGCAGAATCACCCGGGCTGATAAAAACGAGTGTATCCTTAGACATAAGTGTCTTGGAAGCATGAAAATTGGTAGAGATATAATTTTTGTTTGATTTCAAACTACTGAAGTTTTCAAAGCGATTCCTCATGTCAAGGTGTTCCTATGATTGCCCAAAAAAATAATAGCTTGTTTTTCCTTGCCCACAGTTTTTTTTCATGAGATGAAGCAACTTTGACAAGTGAAAACTCAGCTCAAAATTGATCAAAAAATTTGAAATTTGGCTTTAAAAAATTTAAGCCCAGTACAACGTTCTGCTCCAGTTTTACCTCCAGAATCCAAAAATTGAATGTCACGAAAATCCAATTATTCCCCCATGCATGAAATTTTCTGAGCCTATTATCATCTTCAGTCTTTATCTTTGTCTTGGCATCTTTTTTCCTTTTTTTTCACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>401 212 148 130 103 6</canonical_bands>
                <polymorphic_bands>407 212 148 130 103</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>401 278 212 103 6</canonical_bands>
                <polymorphic_bands>407 278 212 103</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTATGTTCACCTATTTTTGTA</pcr_primer_p1>
		<pcr_primer_p2>AACGTTGTACTGGGCTTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>418</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTCTACAAAGTCTGTCACCGTGACAACGGGGTTCATAACAATCAACAAATTTTTGGCTGAAAGCATTTTTTGGGGTTTTTGTACAGGGTGGCGCAGAATCACCCGGGCTGATAAAAACGAGTGTATCCTTAGACATAAGTGTCTTGGAAGCATGAAAATTGGTAGAGATATAATTTTTGTTTGATTTCAAACTACTGAAGTTTTCAAAGCGATTCCTCATGTCAAGGTGTTCCTATGATTGCCCAAAAAAATAATAGCTTGTTTTTCCTTGCCCACAGTTTTTTTTCATGAGATGAAGCAACTTTGACAAGTGAAAACTCAGCTCAAAATTGATCAAAAAATTTGAAATTTGGCTTTAAAAAATTTAAGCCCAGTACAACGTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTCTACAAAGTCTGTCACCGTGRCAACGGGGTTCATAACAATCAACAAATTTTTGGCTGAAAGCATTTTTTGGGGTTTTTGTACAGGGTGGCGCAGAATCACCCGGGCTGATAAAAACGAGTGTATCCTTAGACATAAGTGTCTTGGAAGCATGAAAATTGGTAGAGATATAATTTTTGTTTGATTTCAAACTACTGAAGTTTTCAAAGCGATTCCTCATGTCAAGGTGTTCCTATGATTGCCCAAAAAAATAATAGCTTGTTTTTCCTTGCCCACAGTTTTTTTTCATGAGATGAAGCAACTTTGACAAGTGAAAACTCAGCTCAAAATTGATCAAAAAATTTGAAATTTGGCTTTAAAAAATTTAAGCCCAGTACAACGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22405</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>84274</contig_pos>
        <strand></strand>
        <context>TGGCTGAAAG[C/A]ATTTTTTGGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GTCACCGTGACAACGGGGTTCATAACAATCAACAAATTTTTGGCTGAAAG</left_flank>
        <right_flank>ATTTTTTGGGGTTTTTGTACAGGGTGGCGCAGAATCACCCGGGCTGATAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCGAATCGTCAACTTTGAGCTCAATTAACTCGATTGCTGTGAAATATATCAAACATTTGTCAACTGATAAATTGCTCATCATAATATCATCAGTATTTATGTCAGTTGACCACATGTTGGCATATTTCAAAGGAATCGAGATAATTGACCCAAACGAAGTGCTCTTGGCTGTGACCTGTGATGACTTCACTTTTGGACAGGATGTATGTCTTGAATCTTATAGCTTTTTCGGATTTTAAAATTCTATTTTCCAGGACACCAACAACGACCACTGTCGAGTGGACCAACACCACAGACGGCGGCGCCAAGCAGTGAATGGTTACAGGGATATGGAATGGTCCGTCGCAAGAACCTTCCGTCGAGTTCAGCCCATAAGATTTCATTGGAATAACGCTTTTGATTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTCTACAAAGTCTGTCACCGTGACAACGGGGTTCATAACAATCAACAAATTTTTGGCTGAAAGCATTTTTTGGGGTTTTTGTACAGGGTGGCGCAGAATCACCCGGGCTGATAAAAACGAGTGTATCCTTAGACATAAGTGTCTTGGAAGCATGAAAATTGGTAGAGATATAATTTTTGTTTGATTTCAAACTACTGAAGTTTTCAAAGCGATTCCTCATGTCAAGGTGTTCCTATGATTGCCCAAAAAAATAATAGCTTGTTTTTCCTTGCCCACAGTTTTTTTTCATGAGATGAAGCAACTTTGACAAGTGAAAACTCAGCTCAAAATTGATCAAAAAATTTGAAATTTGGCTTTAAAAAATTTAAGCCCAGTACAACGTTCTGCTCCAGTTTTACCTCCAGAATCCAAAAATTGAATGTCACGAAAATCCAATTATTCCCCCATGCATGAAATTTTCTGAGCCTATTATCATCTTCAGTCTTTATCTTTGTCTTGGCATCTTTTTTCCTTTTTTTTCACCTCGAATTTTGCCACCTTCCTTTGAAACCGAAACCTCGGATT</canonical>
            <polymorphic>CCCGAATCGTCAACTTTGAGCTCAATTAACTCGATTGCTGTGAAATATATCAAACATTTGTCAACTGATAAATTGCTCATCATAATATCATCAGTATTTATGTCAGTTGACCACATGTTGGCATATTTCAAAGGAATCGAGATAATTGACCCAAACGAAGTGCTCTTGGCTGTGACCTGTGATGACTTCACTTTTGGACAGGATGTATGTCTTGAATCTTATAGCTTTTTCGGATTTTAAAATTCTATTTTCCAGGACACCAACAACGACCACTGTCGAGTGGACCAACACCACAGACGGCGGCGCCAAGCAGTGAATGGTTACAGGGATATGGAATGGTCCGTCGCAAGAACCTTCCGTCGAGTTCAGCCCATAAGATTTCATTGGAATAACGCTTTTGATTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTCTACAAAGTCTGTCACCGTGACAACGGGGTTCATAACAATCAACAAATTTTTGGCTGAAAGMATTTTTTGGGGTTTTTGTACAGGGTGGCGCAGAATCACCCGGGCTGATAAAAACGAGTGTATCCTTAGACATAAGTGTCTTGGAAGCATGAAAATTGGTAGAGATATAATTTTTGTTTGATTTCAAACTACTGAAGTTTTCAAAGCGATTCCTCATGTCAAGGTGTTCCTATGATTGCCCAAAAAAATAATAGCTTGTTTTTCCTTGCCCACAGTTTTTTTTCATGAGATGAAGCAACTTTGACAAGTGAAAACTCAGCTCAAAATTGATCAAAAAATTTGAAATTTGGCTTTAAAAAATTTAAGCCCAGTACAACGTTCTGCTCCAGTTTTACCTCCAGAATCCAAAAATTGAATGTCACGAAAATCCAATTATTCCCCCATGCATGAAATTTTCTGAGCCTATTATCATCTTCAGTCTTTATCTTTGTCTTGGCATCTTTTTTCCTTTTTTTTCACCTCGAATTTTGCCACCTTCCTTTGAAACCGAAACCTCGGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTATGTTCACCTATTTTTGTATTTT</pcr_primer_p1>
		<pcr_primer_p2>AACGTTGTACTGGGCTTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>415</pcr_amplicon_size>
		<canonical_amplicon>CTTATGTTCACCTATTTTTGTATTTTAATTATGTCTACAAAGTCTGTCACCGTGACAACGGGGTTCATAACAATCAACAAATTTTTGGCTGAAAGCATTTTTTGGGGTTTTTGTACAGGGTGGCGCAGAATCACCCGGGCTGATAAAAACGAGTGTATCCTTAGACATAAGTGTCTTGGAAGCATGAAAATTGGTAGAGATATAATTTTTGTTTGATTTCAAACTACTGAAGTTTTCAAAGCGATTCCTCATGTCAAGGTGTTCCTATGATTGCCCAAAAAAATAATAGCTTGTTTTTCCTTGCCCACAGTTTTTTTTCATGAGATGAAGCAACTTTGACAAGTGAAAACTCAGCTCAAAATTGATCAAAAAATTTGAAATTTGGCTTTAAAAAATTTAAGCCCAGTACAACGTT</canonical_amplicon>
		<polymorphic_amplicon>CTTATGTTCACCTATTTTTGTATTTTAATTATGTCTACAAAGTCTGTCACCGTGACAACGGGGTTCATAACAATCAACAAATTTTTGGCTGAAAGMATTTTTTGGGGTTTTTGTACAGGGTGGCGCAGAATCACCCGGGCTGATAAAAACGAGTGTATCCTTAGACATAAGTGTCTTGGAAGCATGAAAATTGGTAGAGATATAATTTTTGTTTGATTTCAAACTACTGAAGTTTTCAAAGCGATTCCTCATGTCAAGGTGTTCCTATGATTGCCCAAAAAAATAATAGCTTGTTTTTCCTTGCCCACAGTTTTTTTTCATGAGATGAAGCAACTTTGACAAGTGAAAACTCAGCTCAAAATTGATCAAAAAATTTGAAATTTGGCTTTAAAAAATTTAAGCCCAGTACAACGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22406</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>87978</contig_pos>
        <strand>+</strand>
        <context>CCTCTACCAT[C/T]ATGACGAAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCGCTCTCTTCTCCGTTTTGCCCGCCGCATTCATCTTGACCCTCTACCAT</left_flank>
        <right_flank>ATGACGAAACGTGGCCTTGTGGCCTAATGGATAAGGCGTCTGACTTCTAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCATGTGACAGACGCGGATACTCACCACTATACTACCGAGGACACGATGTAATGAAGAACTAGATGACATAGAGAAAGAGCGTACGTAACGTTTCTTTTTGTTAGAGAACGAGAGAAAATATTCACGTAACTTTACACTAATACATAGCAAGAGCTACTTTTTTTGAATTAGCGACCTCTTTTTTGAAAAACAAAATAATTTTTAAAATCTATAACCTACATTCAGTTCTGAGTTCTTCTTATGCTTTTCCTGCATCATTTCTATAGCCGTTGCGTTCTTTTTCGTGCGGAGACCAAATCGACTGTACGGATTGATCGCCATCTCTTTGAAATCATTGCCGGTTTCCAAACTATTAACATCTATGCAATCATCCAGCTTCTCCGTTTTCAGCCAGCTTTTCAGTGTATCAAATTGATCCTGCAAGAAGTCCAATGTTTCTCGTAGTCTGCGCTCTCTTCTCCGTTTTGCCCGCCGCATTCATCTTGACCCTCTACCATCATGACGAAACGTGGCCTTGTGGCCTAATGGATAAGGCGTCTGACTTCTAATCAGAAGATTGCAGGTTCGATCCCTGCCTGGGTCAAATGTTTTTGTTTTCTTCTCTTACCTTTTTCTGCTCGACCGTCTTCTTTTTTGTTGTATTTGGTAGAGGATTCGTCACATTTGCCACGTCGATCATACACATACAGAAGTTCTCAGCAACGGTGACATCAGGGCACATTCTTGTATTGGGGATTACATCAAAAAGACTAATCCCTCTTCCCTCATCTGCTTTTCCTTTGTTCTCACCTAGCCTCATGTGGACAATATCATGCAGCATTTTATGTACATCAAAATTACTGGAAGAACTAATATTATGCCGTTTCAAGGACTAGGTCTAACCTTGTCAACTTGAATTTGTTGTCTAAAAAATTATTATATTCTTCTGGATACTTTTCCTTGAAACCATTGGGAAATCTAACTGCCATCAAAGGCATCCTCTCTTCAATTCTTCCATG</canonical>
            <polymorphic>CGCATGTGACAGACGCGGATACTCACCACTATACTACCGAGGACACGATGTAATGAAGAACTAGATGACATAGAGAAAGAGCGTACGTAACGTTTCTTTTTGTTAGAGAACGAGAGAAAATATTCACGTAACTTTACACTAATACATAGCAAGAGCTACTTTTTTTGAATTAGCGACCTCTTTTTTGAAAAACAAAATAATTTTTAAAATCTATAACCTACATTCAGTTCTGAGTTCTTCTTATGCTTTTCCTGCATCATTTCTATAGCCGTTGCGTTCTTTTTCGTGCGGAGACCAAATCGACTGTACGGATTGATCGCCATCTCTTTGAAATCATTGCCGGTTTCCAAACTATTAACATCTATGCAATCATCCAGCTTCTCCGTTTTCAGCCAGCTTTTCAGTGTATCAAATTGATCCTGCAAGAAGTCCAATGTTTCTCGTAGTCTGCGCTCTCTTCTCCGTTTTGCCCGCCGCATTCATCTTGACCCTCTACCATYATGACGAAACGTGGCCTTGTGGCCTAATGGATAAGGCGTCTGACTTCTAATCAGAAGATTGCAGGTTCGATCCCTGCCTGGGTCAAATGTTTTTGTTTTCTTCTCTTACCTTTTTCTGCTCGACCGTCTTCTTTTTTGTTGTATTTGGTAGAGGATTCGTCACATTTGCCACGTCGATCATACACATACAGAAGTTCTCAGCAACGGTGACATCAGGGCACATTCTTGTATTGGGGATTACATCAAAAAGACTAATCCCTCTTCCCTCATCTGCTTTTCCTTTGTTCTCACCTAGCCTCATGTGGACAATATCATGCAGCATTTTATGTACATCAAAATTACTGGAAGAACTAATATTATGCCGTTTCAAGGACTAGGTCTAACCTTGTCAACTTGAATTTGTTGTCTAAAAAATTATTATATTCTTCTGGATACTTTTCCTTGAAACCATTGGGAAATCTAACTGCCATCAAAGGCATCCTCTCTTCAATTCTTCCATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>497 299 184 14 3 3</canonical_bands>
                <polymorphic_bands>796 184 14 3 3</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>484 428 72 16</canonical_bands>
                <polymorphic_bands>484 444 72</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTGATCCTGCAAGAAGTC</pcr_primer_p1>
		<pcr_primer_p2>GAATCCTCTACCAAATACAACAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAATTGATCCTGCAAGAAGTCCAATGTTTCTCGTAGTCTGCGCTCTCTTCTCCGTTTTGCCCGCCGCATTCATCTTGACCCTCTACCATCATGACGAAACGTGGCCTTGTGGCCTAATGGATAAGGCGTCTGACTTCTAATCAGAAGATTGCAGGTTCGATCCCTGCCTGGGTCAAATGTTTTTGTTTTCTTCTCTTACCTTTTTCTGCTCGACCGTCTTCTTTTTTGTTGTATTTGGTAGAGGATTC</canonical_amplicon>
		<polymorphic_amplicon>AAATTGATCCTGCAAGAAGTCCAATGTTTCTCGTAGTCTGCGCTCTCTTCTCCGTTTTGCCCGCCGCATTCATCTTGACCCTCTACCATYATGACGAAACGTGGCCTTGTGGCCTAATGGATAAGGCGTCTGACTTCTAATCAGAAGATTGCAGGTTCGATCCCTGCCTGGGTCAAATGTTTTTGTTTTCTTCTCTTACCTTTTTCTGCTCGACCGTCTTCTTTTTTGTTGTATTTGGTAGAGGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22407</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>87835</contig_pos>
        <strand>+</strand>
        <context>CCAAACTATT[A/C]ACATCTATGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TACGGATTGATCGCCATCTCTTTGAAATCATTGCCGGTTTCCAAACTATT</left_flank>
        <right_flank>ACATCTATGCAATCATCCAGCTTCTCCGTTTTCAGCCAGCTTTTCAGTGT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTCGCACGAGCATGCTCAATGGATCCGAGTTCTTGTAGGAACCACTGACTGTGAACTCGAAGTTGAGATACTGAAAAAGATAAATCATTAAATTAAAAATATGAAAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCACTATACTACCGAGGACACGATGTAATGAAGAACTAGATGACATAGAGAAAGAGCGTACGTAACGTTTCTTTTTGTTAGAGAACGAGAGAAAATATTCACGTAACTTTACACTAATACATAGCAAGAGCTACTTTTTTTGAATTAGCGACCTCTTTTTTGAAAAACAAAATAATTTTTAAAATCTATAACCTACATTCAGTTCTGAGTTCTTCTTATGCTTTTCCTGCATCATTTCTATAGCCGTTGCGTTCTTTTTCGTGCGGAGACCAAATCGACTGTACGGATTGATCGCCATCTCTTTGAAATCATTGCCGGTTTCCAAACTATTAACATCTATGCAATCATCCAGCTTCTCCGTTTTCAGCCAGCTTTTCAGTGTATCAAATTGATCCTGCAAGAAGTCCAATGTTTCTCGTAGTCTGCGCTCTCTTCTCCGTTTTGCCCGCCGCATTCATCTTGACCCTCTACCATCATGACGAAACGTGGCCTTGTGGCCTAATGGATAAGGCGTCTGACTTCTAATCAGAAGATTGCAGGTTCGATCCCTGCCTGGGTCAAATGTTTTTGTTTTCTTCTCTTACCTTTTTCTGCTCGACCGTCTTCTTTTTTGTTGTATTTGGTAGAGGATTCGTCACATTTGCCACGTCGATCATACACATACAGAAGTTCTCAGCAACGGTGACATCAGGGCACATTCTTGTATTGGGGATTACATCAAAAAGACTAATCCCTCTTCCCTCATCTGCTTTTCCTTTGTTCTCACCTAGCCTCATGTGGACAATATCATGCAGCATTTTATGTACATCAAAATTACTGGAAGAACTAATAT</canonical>
            <polymorphic>CGTTCGCACGAGCATGCTCAATGGATCCGAGTTCTTGTAGGAACCACTGACTGTGAACTCGAAGTTGAGATACTGAAAAAGATAAATCATTAAATTAAAAATATGAAAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCACTATACTACCGAGGACACGATGTAATGAAGAACTAGATGACATAGAGAAAGAGCGTACGTAACGTTTCTTTTTGTTAGAGAACGAGAGAAAATATTCACGTAACTTTACACTAATACATAGCAAGAGCTACTTTTTTTGAATTAGCGACCTCTTTTTTGAAAAACAAAATAATTTTTAAAATCTATAACCTACATTCAGTTCTGAGTTCTTCTTATGCTTTTCCTGCATCATTTCTATAGCCGTTGCGTTCTTTTTCGTGCGGAGACCAAATCGACTGTACGGATTGATCGCCATCTCTTTGAAATCATTGCCGGTTTCCAAACTATTMACATCTATGCAATCATCCAGCTTCTCCGTTTTCAGCCAGCTTTTCAGTGTATCAAATTGATCCTGCAAGAAGTCCAATGTTTCTCGTAGTCTGCGCTCTCTTCTCCGTTTTGCCCGCCGCATTCATCTTGACCCTCTACCATCATGACGAAACGTGGCCTTGTGGCCTAATGGATAAGGCGTCTGACTTCTAATCAGAAGATTGCAGGTTCGATCCCTGCCTGGGTCAAATGTTTTTGTTTTCTTCTCTTACCTTTTTCTGCTCGACCGTCTTCTTTTTTGTTGTATTTGGTAGAGGATTCGTCACATTTGCCACGTCGATCATACACATACAGAAGTTCTCAGCAACGGTGACATCAGGGCACATTCTTGTATTGGGGATTACATCAAAAAGACTAATCCCTCTTCCCTCATCTGCTTTTCCTTTGTTCTCACCTAGCCTCATGTGGACAATATCATGCAGCATTTTATGTACATCAAAATTACTGGAAGAACTAATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 252 151 90 5</canonical_bands>
                <polymorphic_bands>653 252 90 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACCTACATTCAGTTCTGAGTTC</pcr_primer_p1>
		<pcr_primer_p2>AGACTACGAGAAACATTGGACTT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>AACCTACATTCAGTTCTGAGTTCTTCTTATGCTTTTCCTGCATCATTTCTATAGCCGTTGCGTTCTTTTTCGTGCGGAGACCAAATCGACTGTACGGATTGATCGCCATCTCTTTGAAATCATTGCCGGTTTCCAAACTATTAACATCTATGCAATCATCCAGCTTCTCCGTTTTCAGCCAGCTTTTCAGTGTATCAAATTGATCCTGCAAGAAGTCCAATGTTTCTCGTAGTCT</canonical_amplicon>
		<polymorphic_amplicon>AACCTACATTCAGTTCTGAGTTCTTCTTATGCTTTTCCTGCATCATTTCTATAGCCGTTGCGTTCTTTTTCGTGCGGAGACCAAATCGACTGTACGGATTGATCGCCATCTCTTTGAAATCATTGCCGGTTTCCAAACTATTMACATCTATGCAATCATCCAGCTTCTCCGTTTTCAGCCAGCTTTTCAGTGTATCAAATTGATCCTGCAAGAAGTCCAATGTTTCTCGTAGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22408</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>87682</contig_pos>
        <strand>+</strand>
        <context>AAAATAATTT[A/T]TAAAATCTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGCTACTTTTTTTGAATTAGCGACCTCTTTTTTGAAAAACAAAATAATTT</left_flank>
        <right_flank>TAAAATCTATAACCTACATTCAGTTCTGAGTTCTTCTTATGCTTTTCCTG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCATCACTTGTCTTCAGGGAATTCCTAGGATGAAAGTCGCAGACGAAGACACTGGCATACATCAAAAATGGATACAAAACGACAAAATGCGGGCGTTTCCTGAATCATTGGTTCAAAGATTAGCTGACTTGTGTTCTTCTCGACAAACAATTCCGTTCGCACGAGCATGCTCAATGGATCCGAGTTCTTGTAGGAACCACTGACTGTGAACTCGAAGTTGAGATACTGAAAAAGATAAATCATTAAATTAAAAATATGAAAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCACTATACTACCGAGGACACGATGTAATGAAGAACTAGATGACATAGAGAAAGAGCGTACGTAACGTTTCTTTTTGTTAGAGAACGAGAGAAAATATTCACGTAACTTTACACTAATACATAGCAAGAGCTACTTTTTTTGAATTAGCGACCTCTTTTTTGAAAAACAAAATAATTTTTAAAATCTATAACCTACATTCAGTTCTGAGTTCTTCTTATGCTTTTCCTGCATCATTTCTATAGCCGTTGCGTTCTTTTTCGTGCGGAGACCAAATCGACTGTACGGATTGATCGCCATCTCTTTGAAATCATTGCCGGTTTCCAAACTATTAACATCTATGCAATCATCCAGCTTCTCCGTTTTCAGCCAGCTTTTCAGTGTATCAAATTGATCCTGCAAGAAGTCCAATGTTTCTCGTAGTCTGCGCTCTCTTCTCCGTTTTGCCCGCCGCATTCATCTTGACCCTCTACCATCATGACGAAACGTGGCCTTGTGGCCTAATGGATAAGGCGTCTGACTTCTAATCAGAAGATTGCAGGTTCGATCCCTGCCTGGGTCAAATGTTTTTGTTTTCTTCTCTTACCTTTTTCTGCTCGACCGTCTTCTTTTTTGTTGTATTTGGTAGAGGATTCGTCACATTTGCCACGTCGATCATACACATACAGAAGTTCTCAGCAA</canonical>
            <polymorphic>GCATCACTTGTCTTCAGGGAATTCCTAGGATGAAAGTCGCAGACGAAGACACTGGCATACATCAAAAATGGATACAAAACGACAAAATGCGGGCGTTTCCTGAATCATTGGTTCAAAGATTAGCTGACTTGTGTTCTTCTCGACAAACAATTCCGTTCGCACGAGCATGCTCAATGGATCCGAGTTCTTGTAGGAACCACTGACTGTGAACTCGAAGTTGAGATACTGAAAAAGATAAATCATTAAATTAAAAATATGAAAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCACTATACTACCGAGGACACGATGTAATGAAGAACTAGATGACATAGAGAAAGAGCGTACGTAACGTTTCTTTTTGTTAGAGAACGAGAGAAAATATTCACGTAACTTTACACTAATACATAGCAAGAGCTACTTTTTTTGAATTAGCGACCTCTTTTTTGAAAAACAAAATAATTTWTAAAATCTATAACCTACATTCAGTTCTGAGTTCTTCTTATGCTTTTCCTGCATCATTTCTATAGCCGTTGCGTTCTTTTTCGTGCGGAGACCAAATCGACTGTACGGATTGATCGCCATCTCTTTGAAATCATTGCCGGTTTCCAAACTATTAACATCTATGCAATCATCCAGCTTCTCCGTTTTCAGCCAGCTTTTCAGTGTATCAAATTGATCCTGCAAGAAGTCCAATGTTTCTCGTAGTCTGCGCTCTCTTCTCCGTTTTGCCCGCCGCATTCATCTTGACCCTCTACCATCATGACGAAACGTGGCCTTGTGGCCTAATGGATAAGGCGTCTGACTTCTAATCAGAAGATTGCAGGTTCGATCCCTGCCTGGGTCAAATGTTTTTGTTTTCTTCTCTTACCTTTTTCTGCTCGACCGTCTTCTTTTTTGTTGTATTTGGTAGAGGATTCGTCACATTTGCCACGTCGATCATACACATACAGAAGTTCTCAGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>349 252 243 151 5</canonical_bands>
                <polymorphic_bands>403 349 243 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGATACTCACCACTATACTACC</pcr_primer_p1>
		<pcr_primer_p2>CTATAGAAATGATGCAGGAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CGGATACTCACCACTATACTACCGAGGACACGATGTAATGAAGAACTAGATGACATAGAGAAAGAGCGTACGTAACGTTTCTTTTTGTTAGAGAACGAGAGAAAATATTCACGTAACTTTACACTAATACATAGCAAGAGCTACTTTTTTTGAATTAGCGACCTCTTTTTTGAAAAACAAAATAATTTTTAAAATCTATAACCTACATTCAGTTCTGAGTTCTTCTTATGCTTTTCCTGCATCATTTCTATAG</canonical_amplicon>
		<polymorphic_amplicon>CGGATACTCACCACTATACTACCGAGGACACGATGTAATGAAGAACTAGATGACATAGAGAAAGAGCGTACGTAACGTTTCTTTTTGTTAGAGAACGAGAGAAAATATTCACGTAACTTTACACTAATACATAGCAAGAGCTACTTTTTTTGAATTAGCGACCTCTTTTTTGAAAAACAAAATAATTTWTAAAATCTATAACCTACATTCAGTTCTGAGTTCTTCTTATGCTTTTCCTGCATCATTTCTATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22409</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>87603</contig_pos>
        <strand>+</strand>
        <context>AGAAAATATT[A/C]ACGTAACTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAAGAGCGTACGTAACGTTTCTTTTTGTTAGAGAACGAGAGAAAATATT</left_flank>
        <right_flank>ACGTAACTTTACACTAATACATAGCAAGAGCTACTTTTTTTGAATTAGCG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGAAATGGGGAATAAAAGAATATAACCCGTGCAGCACACAGAAATTAGAAAAACGGAAGGAAAAAGTGACGAAAAAGGCATCACTTGTCTTCAGGGAATTCCTAGGATGAAAGTCGCAGACGAAGACACTGGCATACATCAAAAATGGATACAAAACGACAAAATGCGGGCGTTTCCTGAATCATTGGTTCAAAGATTAGCTGACTTGTGTTCTTCTCGACAAACAATTCCGTTCGCACGAGCATGCTCAATGGATCCGAGTTCTTGTAGGAACCACTGACTGTGAACTCGAAGTTGAGATACTGAAAAAGATAAATCATTAAATTAAAAATATGAAAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCACTATACTACCGAGGACACGATGTAATGAAGAACTAGATGACATAGAGAAAGAGCGTACGTAACGTTTCTTTTTGTTAGAGAACGAGAGAAAATATTCACGTAACTTTACACTAATACATAGCAAGAGCTACTTTTTTTGAATTAGCGACCTCTTTTTTGAAAAACAAAATAATTTTTAAAATCTATAACCTACATTCAGTTCTGAGTTCTTCTTATGCTTTTCCTGCATCATTTCTATAGCCGTTGCGTTCTTTTTCGTGCGGAGACCAAATCGACTGTACGGATTGATCGCCATCTCTTTGAAATCATTGCCGGTTTCCAAACTATTAACATCTATGCAATCATCCAGCTTCTCCGTTTTCAGCCAGCTTTTCAGTGTATCAAATTGATCCTGCAAGAAGTCCAATGTTTCTCGTAGTCTGCGCTCTCTTCTCCGTTTTGCCCGCCGCATTCATCTTGACCCTCTACCATCATGACGAAACGTGGCCTTGTGGCCTAATGGATAAGGCGTCTGACTTCTAATCAGAAGATTGCAGGTTCGATCCCTGCCTGGGTCAAATGTTTTTGTTTTCTTCTCTTACCTTTTTCTGCTCGACC</canonical>
            <polymorphic>GGAGAAATGGGGAATAAAAGAATATAACCCGTGCAGCACACAGAAATTAGAAAAACGGAAGGAAAAAGTGACGAAAAAGGCATCACTTGTCTTCAGGGAATTCCTAGGATGAAAGTCGCAGACGAAGACACTGGCATACATCAAAAATGGATACAAAACGACAAAATGCGGGCGTTTCCTGAATCATTGGTTCAAAGATTAGCTGACTTGTGTTCTTCTCGACAAACAATTCCGTTCGCACGAGCATGCTCAATGGATCCGAGTTCTTGTAGGAACCACTGACTGTGAACTCGAAGTTGAGATACTGAAAAAGATAAATCATTAAATTAAAAATATGAAAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCACTATACTACCGAGGACACGATGTAATGAAGAACTAGATGACATAGAGAAAGAGCGTACGTAACGTTTCTTTTTGTTAGAGAACGAGAGAAAATATTMACGTAACTTTACACTAATACATAGCAAGAGCTACTTTTTTTGAATTAGCGACCTCTTTTTTGAAAAACAAAATAATTTTTAAAATCTATAACCTACATTCAGTTCTGAGTTCTTCTTATGCTTTTCCTGCATCATTTCTATAGCCGTTGCGTTCTTTTTCGTGCGGAGACCAAATCGACTGTACGGATTGATCGCCATCTCTTTGAAATCATTGCCGGTTTCCAAACTATTAACATCTATGCAATCATCCAGCTTCTCCGTTTTCAGCCAGCTTTTCAGTGTATCAAATTGATCCTGCAAGAAGTCCAATGTTTCTCGTAGTCTGCGCTCTCTTCTCCGTTTTGCCCGCCGCATTCATCTTGACCCTCTACCATCATGACGAAACGTGGCCTTGTGGCCTAATGGATAAGGCGTCTGACTTCTAATCAGAAGATTGCAGGTTCGATCCCTGCCTGGGTCAAATGTTTTTGTTTTCTTCTCTTACCTTTTTCTGCTCGACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>498 461 41</canonical_bands>
                <polymorphic_bands>539 461</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>150 118 107 104 96 82 81 45 38 33 30 28 17 17 15 12 9 8 5 3 2</canonical_bands>
                <polymorphic_bands>150 118 107 104 96 93 82 45 38 33 30 28 17 17 15 9 8 5 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGATACTCACCACTATACTACC</pcr_primer_p1>
		<pcr_primer_p2>CTATAGAAATGATGCAGGAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CGGATACTCACCACTATACTACCGAGGACACGATGTAATGAAGAACTAGATGACATAGAGAAAGAGCGTACGTAACGTTTCTTTTTGTTAGAGAACGAGAGAAAATATTCACGTAACTTTACACTAATACATAGCAAGAGCTACTTTTTTTGAATTAGCGACCTCTTTTTTGAAAAACAAAATAATTTTTAAAATCTATAACCTACATTCAGTTCTGAGTTCTTCTTATGCTTTTCCTGCATCATTTCTATAG</canonical_amplicon>
		<polymorphic_amplicon>CGGATACTCACCACTATACTACCGAGGACACGATGTAATGAAGAACTAGATGACATAGAGAAAGAGCGTACGTAACGTTTCTTTTTGTTAGAGAACGAGAGAAAATATTMACGTAACTTTACACTAATACATAGCAAGAGCTACTTTTTTTGAATTAGCGACCTCTTTTTTGAAAAACAAAATAATTTTTAAAATCTATAACCTACATTCAGTTCTGAGTTCTTCTTATGCTTTTCCTGCATCATTTCTATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22466</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>143477</contig_pos>
        <strand>+</strand>
        <context>CTAGTCACTT[G/T]TTGGGATAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACCAGGCTTGGAATAGGATTAGACAAATGATTATCCCTCTCTAGTCACTT</left_flank>
        <right_flank>TTGGGATAAAAATAGAATTTAAACTATAGTGATGAGAGAGAATGTTTAGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGTACAAAATGAAAACAGACGTATCGTGTTTTCAACGAATATCAAATACTTCTTGAAGAAGTAATCCAGATGAAAACAGAATACCAAAATAATAAAAACACTCCATGTATTCGTTCTAGAAGAAAAATAAAACGAAAAGTTTATCCTAAAGATCTGATTTTTTTCGAGTAGCCGATTTTTCGACAAATTTTTGATAATGATAGAAAGAGAAATGGGGATGATAAGCAGACGGACGAAGGGCGGACGAATGTTCAAACATCAAGAAAGACAGATTGAGAAGACGGAGAAGACAGCTGATAAGGGTTCAAAACAGAAAACAGAAATTTTCAATTTTTTTTTTATTATAGAAAAAGAAAAATAATAAAAACAAAATTTGAAAAAAGCGAACGGTCTTCTTCTTTTTTCCTTCAGTTAAGCGAGAATAGATTTAGAGAGAGATTTAGATGAAACCAGGCTTGGAATAGGATTAGACAAATGATTATCCCTCTCTAGTCACTTGTTGGGATAAAAATAGAATTTAAACTATAGTGATGAGAGAGAATGTTTAGAGGAAAAAAATAATACTTTGTAATTTTAGTTCCGGGTATATATTTGAATTTTGATGAGTAATGCATTGGCTTAAATAACAAGCATATTCGTAACCAGCAAGCTGGTGCGCCTTCGGCACGATTCAATCTATTTTTTCAAACGTTCGTCGCTTCGTTTCTCACTTTTTCTAAATAAAAGGGTCACGTAAATATATATGTATTTTTCAATTTTTTCAAAAGTCCACAGACGGACACGAGGACGGACAGACGCCTCTAGTGTTTTATTAATAAAGAAGATGACATATTTTGAGAAAGATACAAAATCAGAAAATTGCTCAAATGAGCAGCATAAATAGAGATCAGAAATTTGTCATGTTGAAATGAACATTAATAAGTGATGTTAGTTTTTTAAGGGATCATCCAGGTTTTCACCCATTTCAAAGCCTCACGTGGCCATTGGGATTTTCAGAGA</canonical>
            <polymorphic>GGGTACAAAATGAAAACAGACGTATCGTGTTTTCAACGAATATCAAATACTTCTTGAAGAAGTAATCCAGATGAAAACAGAATACCAAAATAATAAAAACACTCCATGTATTCGTTCTAGAAGAAAAATAAAACGAAAAGTTTATCCTAAAGATCTGATTTTTTTCGAGTAGCCGATTTTTCGACAAATTTTTGATAATGATAGAAAGAGAAATGGGGATGATAAGCAGACGGACGAAGGGCGGACGAATGTTCAAACATCAAGAAAGACAGATTGAGAAGACGGAGAAGACAGCTGATAAGGGTTCAAAACAGAAAACAGAAATTTTCAATTTTTTTTTTATTATAGAAAAAGAAAAATAATAAAAACAAAATTTGAAAAAAGCGAACGGTCTTCTTCTTTTTTCCTTCAGTTAAGCGAGAATAGATTTAGAGAGAGATTTAGATGAAACCAGGCTTGGAATAGGATTAGACAAATGATTATCCCTCTCTAGTCACTTKTTGGGATAAAAATAGAATTTAAACTATAGTGATGAGAGAGAATGTTTAGAGGAAAAAAATAATACTTTGTAATTTTAGTTCCGGGTATATATTTGAATTTTGATGAGTAATGCATTGGCTTAAATAACAAGCATATTCGTAACCAGCAAGCTGGTGCGCCTTCGGCACGATTCAATCTATTTTTTCAAACGTTCGTCGCTTCGTTTCTCACTTTTTCTAAATAAAAGGGTCACGTAAATATATATGTATTTTTCAATTTTTTCAAAAGTCCACAGACGGACACGAGGACGGACAGACGCCTCTAGTGTTTTATTAATAAAGAAGATGACATATTTTGAGAAAGATACAAAATCAGAAAATTGCTCAAATGAGCAGCATAAATAGAGATCAGAAATTTGTCATGTTGAAATGAACATTAATAAGTGATGTTAGTTTTTTAAGGGATCATCCAGGTTTTCACCCATTTCAAAGCCTCACGTGGCCATTGGGATTTTCAGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTCAGTTAAGCGAGAATAGAT</pcr_primer_p1>
		<pcr_primer_p2>ACGAATATGCTTGTTATTTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>CCTTCAGTTAAGCGAGAATAGATTTAGAGAGAGATTTAGATGAAACCAGGCTTGGAATAGGATTAGACAAATGATTATCCCTCTCTAGTCACTTGTTGGGATAAAAATAGAATTTAAACTATAGTGATGAGAGAGAATGTTTAGAGGAAAAAAATAATACTTTGTAATTTTAGTTCCGGGTATATATTTGAATTTTGATGAGTAATGCATTGGCTTAAATAACAAGCATATTCGT</canonical_amplicon>
		<polymorphic_amplicon>CCTTCAGTTAAGCGAGAATAGATTTAGAGAGAGATTTAGATGAAACCAGGCTTGGAATAGGATTAGACAAATGATTATCCCTCTCTAGTCACTTKTTGGGATAAAAATAGAATTTAAACTATAGTGATGAGAGAGAATGTTTAGAGGAAAAAAATAATACTTTGTAATTTTAGTTCCGGGTATATATTTGAATTTTGATGAGTAATGCATTGGCTTAAATAACAAGCATATTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22467</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>144837</contig_pos>
        <strand>+</strand>
        <context>TTGAGGTCTT[C/G]AACGTCGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGGTACTGCTGATCCAGAGGATTTTGAATATCAGTGCTCTTTGAGGTCTT</left_flank>
        <right_flank>AACGTCGAAGAAAAGAAGATTAGTGACTTTACACTTCTTGCTCTATTGCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGGAAAAAGGAGAAAACGAAAATGTAGAAGAAGGAAAAAAAACGAAAAAAGGAAGAAGAAGACAAAAGTAACACTGTGGTAAAGGGGACCAGAGAAGAGTGTGTGGAGACACAGATAGACGCTCAAAAATGTCGTAGTATAGGAAGAGAAGGGGCCTGGGGTGCCCTGACAGTTGGGGGGGTCTCGTGTGTCTGTGTCAATCCTCTCCAGAATTAGTGTGTACTCTCTTGGGGTGAGAAAATGTTCTCTCTCGATGCGGGAGGTGGAAAAGATACGAGAGTGATGCTTGAAGAAGTGTGGAGGTCTCGGAGAGAGACAACACAATGACAACGCATCACAGAACACAAGATTTGTGGTCGGTTCCGACTTGTTCGACGGTTCCCATCTTTTCAACTCTCCCCATTTTTGTCCCTTGAATGTTTTCGCTTTTTTTCTGCTTTTTTCTTCCTGGTACTGCTGATCCAGAGGATTTTGAATATCAGTGCTCTTTGAGGTCTTGAACGTCGAAGAAAAGAAGATTAGTGACTTTACACTTCTTGCTCTATTGCTCTTGATTCTCGATTATGTTTTGGTTGGTTTGTTGATTCGAATGAGGAGCAAAACAGAGAGAAAAAACAGAGAGAATCCCCATATCTTCTTTTTGATTCTCTGGGTCTCATGTACCTTTTAATCGTCAAAGATTGTCTGAACTATTCCCGCGTATCCCCGAAAATGCTCATTGATTTACGAACATCTCAGATTATCCGATTTCTTTCATACTCTCTCCTCCCCAATCCTCTCTACCTCCTTTCCTGATCATCACAGATTATTGATCTTCGTTTTATGGTTTCAATGTGGACGATTGAATTGATGACGTTGTCCTCCGTATCATGTCGACGCCTAGTATAATAGCAGACACGGATCAAAACACGACAATTTTTTTTTGGAAAACTTCTTGGATCGATTCTCTCTTGGGACCTTTTTTCTCCGTTTTGTCCTTCTTCTTGAGAAAAAAGAGCG</canonical>
            <polymorphic>GGGGAAAAAGGAGAAAACGAAAATGTAGAAGAAGGAAAAAAAACGAAAAAAGGAAGAAGAAGACAAAAGTAACACTGTGGTAAAGGGGACCAGAGAAGAGTGTGTGGAGACACAGATAGACGCTCAAAAATGTCGTAGTATAGGAAGAGAAGGGGCCTGGGGTGCCCTGACAGTTGGGGGGGTCTCGTGTGTCTGTGTCAATCCTCTCCAGAATTAGTGTGTACTCTCTTGGGGTGAGAAAATGTTCTCTCTCGATGCGGGAGGTGGAAAAGATACGAGAGTGATGCTTGAAGAAGTGTGGAGGTCTCGGAGAGAGACAACACAATGACAACGCATCACAGAACACAAGATTTGTGGTCGGTTCCGACTTGTTCGACGGTTCCCATCTTTTCAACTCTCCCCATTTTTGTCCCTTGAATGTTTTCGCTTTTTTTCTGCTTTTTTCTTCCTGGTACTGCTGATCCAGAGGATTTTGAATATCAGTGCTCTTTGAGGTCTTSAACGTCGAAGAAAAGAAGATTAGTGACTTTACACTTCTTGCTCTATTGCTCTTGATTCTCGATTATGTTTTGGTTGGTTTGTTGATTCGAATGAGGAGCAAAACAGAGAGAAAAAACAGAGAGAATCCCCATATCTTCTTTTTGATTCTCTGGGTCTCATGTACCTTTTAATCGTCAAAGATTGTCTGAACTATTCCCGCGTATCCCCGAAAATGCTCATTGATTTACGAACATCTCAGATTATCCGATTTCTTTCATACTCTCTCCTCCCCAATCCTCTCTACCTCCTTTCCTGATCATCACAGATTATTGATCTTCGTTTTATGGTTTCAATGTGGACGATTGAATTGATGACGTTGTCCTCCGTATCATGTCGACGCCTAGTATAATAGCAGACACGGATCAAAACACGACAATTTTTTTTTGGAAAACTTCTTGGATCGATTCTCTCTTGGGACCTTTTTTCTCCGTTTTGTCCTTCTTCTTGAGAAAAAAGAGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>234 212 208 192 54 43 34 16 7</canonical_bands>
                <polymorphic_bands>234 212 208 192 88 43 16 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAGAGACAACACAATGACAA</pcr_primer_p1>
		<pcr_primer_p2>AATCAAGAGCAATAGAGCAAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAGAGAGACAACACAATGACAACGCATCACAGAACACAAGATTTGTGGTCGGTTCCGACTTGTTCGACGGTTCCCATCTTTTCAACTCTCCCCATTTTTGTCCCTTGAATGTTTTCGCTTTTTTTCTGCTTTTTTCTTCCTGGTACTGCTGATCCAGAGGATTTTGAATATCAGTGCTCTTTGAGGTCTTGAACGTCGAAGAAAAGAAGATTAGTGACTTTACACTTCTTGCTCTATTGCTCTTGATT</canonical_amplicon>
		<polymorphic_amplicon>GAGAGAGACAACACAATGACAACGCATCACAGAACACAAGATTTGTGGTCGGTTCCGACTTGTTCGACGGTTCCCATCTTTTCAACTCTCCCCATTTTTGTCCCTTGAATGTTTTCGCTTTTTTTCTGCTTTTTTCTTCCTGGTACTGCTGATCCAGAGGATTTTGAATATCAGTGCTCTTTGAGGTCTTSAACGTCGAAGAAAAGAAGATTAGTGACTTTACACTTCTTGCTCTATTGCTCTTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22490</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>151056</contig_pos>
        <strand>+</strand>
        <context>GTGAATTGTA[A/G]ACTTGAATCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGACTTTGCTGTTAAACTCAATTTCGATACTTTCAAATTGTGAATTGTA</left_flank>
        <right_flank>ACTTGAATCGTAAATCAAGATGTGAATCAGAATGAGCCACGATCGCAAGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCAGGAACCGAATTTTGGCAAAGTTGACGGCTACGGCAAAAATCGACCGTAAACACTCAAGGTTTCCAGTGTCTGTAGTTCAAAAATAACTATGAATCGCCCCTGAATTTAACTTTGAACCAATTCGTCTCCGTTCCTATCGATGCTGTGAAAAAGTTATCAGCTAATAAATCGTTTATCATAATATCACAAACATTTTGTCAGTCGACACACATTGAAATTTTGCATAGTGACCAAGAAAATTCAGCTCAAACTTGACAGCGTGGAGGGCTGACGGTAGTTCTCCTATCACCGGCTCTACAGTATGTTCTTCTCCTTGGAGCAACGAGAAAAAAGCTTCTGAAAAAAAGGACAATGTGATATATTTATCACATACGAAACTTCCGTTTTGTGCCGACTGACCATCCTAATGCTTTGAATGGAAACTACGGCATTTTTTCGTATTTGCGGACTTTGCTGTTAAACTCAATTTCGATACTTTCAAATTGTGAATTGTAAACTTGAATCGTAAATCAAGATGTGAATCAGAATGAGCCACGATCGCAAGTTGAAATAATCAGACAGATCGCTAGTTTCTATCGGATCAATATCGGGTTGTAAAGCACTGGCACTGTAAGTAGTCTGCGTACATCTGCATTTTAAAGGTATTTTATGAAATAAAAATCCATTGATTAAAAAAGATTCGTTCAGCTCGCATAAAGAGGTCCAAGGAAAATTTGATAACGTCATCTTGAGCAAATAATCCGAGTACGTGTTAATTGGTACGAAGCGATATTCGTCTGTTAGATGTTCGACAGGGAAACGGATAGCTGCATCGCCTAGCGACTGTGAAGTATAAAACATCGTAGATCGATCTAACTATTAGTGCAAGGATATTCTGGAGATCTGGATCATCGTGTCTCCATTTTCAGTAGGATCCAACAGTGAAAATTTGGGTTTGAGAAGGTTTTTATTAAAATAACTGAACTAATTAATGAGTTTTAACAAAAATAATAATA</canonical>
            <polymorphic>TTGCAGGAACCGAATTTTGGCAAAGTTGACGGCTACGGCAAAAATCGACCGTAAACACTCAAGGTTTCCAGTGTCTGTAGTTCAAAAATAACTATGAATCGCCCCTGAATTTAACTTTGAACCAATTCGTCTCCGTTCCTATCGATGCTGTGAAAAAGTTATCAGCTAATAAATCGTTTATCATAATATCACAAACATTTTGTCAGTCGACACACATTGAAATTTTGCATAGTGACCAAGAAAATTCAGCTCAAACTTGACAGCGTGGAGGGCTGACGGTAGTTCTCCTATCACCGGCTCTACAGTATGTTCTTCTCCTTGGAGCAACGAGAAAAAAGCTTCTGAAAAAAAGGACAATGTGATATATTTATCACATACGAAACTTCCGTTTTGTGCCGACTGACCATCCTAATGCTTTGAATGGAAACTACGGCATTTTTTCGTATTTGCGGACTTTGCTGTTAAACTCAATTTCGATACTTTCAAATTGTGAATTGTARACTTGAATCGTAAATCAAGATGTGAATCAGAATGAGCCACGATCGCAAGTTGAAATAATCAGACAGATCGCTAGTTTCTATCGGATCAATATCGGGTTGTAAAGCACTGGCACTGTAAGTAGTCTGCGTACATCTGCATTTTAAAGGTATTTTATGAAATAAAAATCCATTGATTAAAAAAGATTCGTTCAGCTCGCATAAAGAGGTCCAAGGAAAATTTGATAACGTCATCTTGAGCAAATAATCCGAGTACGTGTTAATTGGTACGAAGCGATATTCGTCTGTTAGATGTTCGACAGGGAAACGGATAGCTGCATCGCCTAGCGACTGTGAAGTATAAAACATCGTAGATCGATCTAACTATTAGTGCAAGGATATTCTGGAGATCTGGATCATCGTGTCTCCATTTTCAGTAGGATCCAACAGTGAAAATTTGGGTTTGAGAAGGTTTTTATTAAAATAACTGAACTAATTAATGAGTTTTAACAAAAATAATAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAATGCTTTGAATGGAAACTAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATACCTTTAAAATGCAGATG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTAATGCTTTGAATGGAAACTACGGCATTTTTTCGTATTTGCGGACTTTGCTGTTAAACTCAATTTCGATACTTTCAAATTGTGAATTGTAAACTTGAATCGTAAATCAAGATGTGAATCAGAATGAGCCACGATCGCAAGTTGAAATAATCAGACAGATCGCTAGTTTCTATCGGATCAATATCGGGTTGTAAAGCACTGGCACTGTAAGTAGTCTGCGTACATCTGCATTTTAAAGGTATTTT</canonical_amplicon>
		<polymorphic_amplicon>CTAATGCTTTGAATGGAAACTACGGCATTTTTTCGTATTTGCGGACTTTGCTGTTAAACTCAATTTCGATACTTTCAAATTGTGAATTGTARACTTGAATCGTAAATCAAGATGTGAATCAGAATGAGCCACGATCGCAAGTTGAAATAATCAGACAGATCGCTAGTTTCTATCGGATCAATATCGGGTTGTAAAGCACTGGCACTGTAAGTAGTCTGCGTACATCTGCATTTTAAAGGTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22491</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>155047</contig_pos>
        <strand>+</strand>
        <context>TAGCGGAAAG[A/G]TTAAAATTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGTACATGAGATTTTTTAGTTGTATGGTTTTTTCCAAATTAGCGGAAAG</left_flank>
        <right_flank>TTAAAATTGGATTTTGGAAATTAACAGGATTTTGAATAAATGAAAACAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGAAATCCAGAAAAAGTAAAATAAGATGATGATGTGCATAGGGGCAAAAGAAGAGTGAGTAGCAGCTGGGATATATGGAAACAACATGCGCATTCTCTACCGATTAGACACAGATGTGCCTCCAGCCAAGAGCACAGCTTGTGCTCAGCGCCCCGAAATCCTGACTCTCCCTTTCTTCTTCTTCTTCCTTTTATTTTTTTTCATTTCTAAATCATCTGCGCCTGTCACGACTACAATGAAAAGCAATATATAGACCAGCCCTTCCAAAAAACAACACTTTCTGATTATATGATCATTTTGCGAATGCCACCTACCCGCACCCCCTCTACAACTTTTTGCCCCCCTCTGTTTGTTTGTTTTACGGAATTTAGGAGAACAATCTAGTCTCCGGGAAAGTCTCTTCAAATTAAAAAATATTCAGTCAGAGCCTTAGTCAAACAAAAATATATGTACATGAGATTTTTTAGTTGTATGGTTTTTTCCAAATTAGCGGAAAGATTAAAATTGGATTTTGGAAATTAACAGGATTTTGAATAAATGAAAACAAACCAGGAAGGAACCATGTGAACTGGAAATATTATTAATAATCATTCCCAGAAAAATCTTCAAGTTGTATTTTTAGCTGGGTGAGGTTCTAAATTGAAAAAAAGGTATTTTTAAGACTTTGCGGCAATACCTTCGCTAATTTTACTGTAGTTTACGGTTATTCGCATTTGAGCGCATTTACACAACATCTCGAAAAATCCCCCACCGTGGAGAAAGACCACTATGTGGAACTGCGAAAATTGACACATGACTGATAATCAGTTGGTTGATTTTCGGTTATAGTAGACATATAAAAAATAAGAAAAAGATAAATTTCGGAAAACATTCTCGTCAGAAAAAAATCAATGACTCTAGTTGCTTATTTTGGATATTTAAGAAAATTTTGGAATTAAAAGAAGAATTTGGATTTTAAAACAAATTTAGGTTTCAGAGGAGACCATGATACAGATATT</canonical>
            <polymorphic>GATGAAATCCAGAAAAAGTAAAATAAGATGATGATGTGCATAGGGGCAAAAGAAGAGTGAGTAGCAGCTGGGATATATGGAAACAACATGCGCATTCTCTACCGATTAGACACAGATGTGCCTCCAGCCAAGAGCACAGCTTGTGCTCAGCGCCCCGAAATCCTGACTCTCCCTTTCTTCTTCTTCTTCCTTTTATTTTTTTTCATTTCTAAATCATCTGCGCCTGTCACGACTACAATGAAAAGCAATATATAGACCAGCCCTTCCAAAAAACAACACTTTCTGATTATATGATCATTTTGCGAATGCCACCTACCCGCACCCCCTCTACAACTTTTTGCCCCCCTCTGTTTGTTTGTTTTACGGAATTTAGGAGAACAATCTAGTCTCCGGGAAAGTCTCTTCAAATTAAAAAATATTCAGTCAGAGCCTTAGTCAAACAAAAATATATGTACATGAGATTTTTTAGTTGTATGGTTTTTTCCAAATTAGCGGAAAGRTTAAAATTGGATTTTGGAAATTAACAGGATTTTGAATAAATGAAAACAAACCAGGAAGGAACCATGTGAACTGGAAATATTATTAATAATCATTCCCAGAAAAATCTTCAAGTTGTATTTTTAGCTGGGTGAGGTTCTAAATTGAAAAAAAGGTATTTTTAAGACTTTGCGGCAATACCTTCGCTAATTTTACTGTAGTTTACGGTTATTCGCATTTGAGCGCATTTACACAACATCTCGAAAAATCCCCCACCGTGGAGAAAGACCACTATGTGGAACTGCGAAAATTGACACATGACTGATAATCAGTTGGTTGATTTTCGGTTATAGTAGACATATAAAAAATAAGAAAAAGATAAATTTCGGAAAACATTCTCGTCAGAAAAAAATCAATGACTCTAGTTGCTTATTTTGGATATTTAAGAAAATTTTGGAATTAAAAGAAGAATTTGGATTTTAAAACAAATTTAGGTTTCAGAGGAGACCATGATACAGATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTACGGAATTTAGGAGAACAAT</pcr_primer_p1>
		<pcr_primer_p2>AAGATTTTTCTGGGAATGATTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTACGGAATTTAGGAGAACAATCTAGTCTCCGGGAAAGTCTCTTCAAATTAAAAAATATTCAGTCAGAGCCTTAGTCAAACAAAAATATATGTACATGAGATTTTTTAGTTGTATGGTTTTTTCCAAATTAGCGGAAAGATTAAAATTGGATTTTGGAAATTAACAGGATTTTGAATAAATGAAAACAAACCAGGAAGGAACCATGTGAACTGGAAATATTATTAATAATCATTCCCAGAAAAATCTT</canonical_amplicon>
		<polymorphic_amplicon>TTTACGGAATTTAGGAGAACAATCTAGTCTCCGGGAAAGTCTCTTCAAATTAAAAAATATTCAGTCAGAGCCTTAGTCAAACAAAAATATATGTACATGAGATTTTTTAGTTGTATGGTTTTTTCCAAATTAGCGGAAAGRTTAAAATTGGATTTTGGAAATTAACAGGATTTTGAATAAATGAAAACAAACCAGGAAGGAACCATGTGAACTGGAAATATTATTAATAATCATTCCCAGAAAAATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22492</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>195531</contig_pos>
        <strand>+</strand>
        <context>TTTACTATTG[A/G]TTCGGAGAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTTCTCGATTCATATTCTCGGGATTCTCCGCTCTATCATTTTACTATTG</left_flank>
        <right_flank>TTCGGAGAGTATTCAGGTGTTTCCCAATTTATGAATATGTTCGACGAAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTCAAAACCAACAACAACAGCTCCATCAACATCTCAATATGTCGAATCAACCATCTACCTCTTCAATGTCCGCATCTAATTATTTCCCAAATTAAAATGGGAATTCATGTCGAACTACATTGCTGTTTATGGTCCATACCCGTCTTGTGTTCATATATTGCATTTCCATTTCGTTTTTTAGATAAAAAATCACCATGTGATTATTTGCGAATTGTCAATTGCTCCCTTATCCAAATTTATATTATGTTCCAATTGAAAACATTCAAAATTACCATGTTCCTCCTTCCCCCTCTAGAATCTATTAGGTTTCTACCCCAATCTTGCGTATTAGAACATCATTATTTTCTCACAGACACCGGTCTCCTAATTTTCGATATGTGTACTTCGAATTGTTTCATTCGCTCCGCCCATTGTCCCAAATGCACCCGTTTTTTATATCACACTGATGCTTCTCGATTCATATTCTCGGGATTCTCCGCTCTATCATTTTACTATTGATTCGGAGAGTATTCAGGTGTTTCCCAATTTATGAATATGTTCGACGAAATTCTTGATTTTATTATATGAGAGATGTGAGAAGAATAACAACCATAAGTTTACCAGAGGAAGATAACTGACTATAAAAAATGGACAGAATATGCGCTAGCCGTAGAAGAGAAAATAAGGAAAAAGAAACTATCAACTTGTAAAGCAATTGAAAAAGAAAATAAAGTTGAACAGGATAGGATTGAAAACAATAAGAGATCGGAATATATTATTATAAAGAGACAAAAACCTGGGGGAGCATCAGAGAAAAGACAAATTATGAGGAGAACGGGAATAGGAGAAACTTGACAAGTCCAGTAATGAGGTAGGAATAAACATTGTACTGGGCGTAAAACGATCCAAACCAGAAGCCATACATTCCAATGATTTTCGCCCAAGAGAAGGCGATTCGTGTTCCTTTCTCGCCTGGATTGAATTCACCAGTGGCGTAGTAGCGAGCTGAAAGAAGAAGA</canonical>
            <polymorphic>TCTTCAAAACCAACAACAACAGCTCCATCAACATCTCAATATGTCGAATCAACCATCTACCTCTTCAATGTCCGCATCTAATTATTTCCCAAATTAAAATGGGAATTCATGTCGAACTACATTGCTGTTTATGGTCCATACCCGTCTTGTGTTCATATATTGCATTTCCATTTCGTTTTTTAGATAAAAAATCACCATGTGATTATTTGCGAATTGTCAATTGCTCCCTTATCCAAATTTATATTATGTTCCAATTGAAAACATTCAAAATTACCATGTTCCTCCTTCCCCCTCTAGAATCTATTAGGTTTCTACCCCAATCTTGCGTATTAGAACATCATTATTTTCTCACAGACACCGGTCTCCTAATTTTCGATATGTGTACTTCGAATTGTTTCATTCGCTCCGCCCATTGTCCCAAATGCACCCGTTTTTTATATCACACTGATGCTTCTCGATTCATATTCTCGGGATTCTCCGCTCTATCATTTTACTATTGRTTCGGAGAGTATTCAGGTGTTTCCCAATTTATGAATATGTTCGACGAAATTCTTGATTTTATTATATGAGAGATGTGAGAAGAATAACAACCATAAGTTTACCAGAGGAAGATAACTGACTATAAAAAATGGACAGAATATGCGCTAGCCGTAGAAGAGAAAATAAGGAAAAAGAAACTATCAACTTGTAAAGCAATTGAAAAAGAAAATAAAGTTGAACAGGATAGGATTGAAAACAATAAGAGATCGGAATATATTATTATAAAGAGACAAAAACCTGGGGGAGCATCAGAGAAAAGACAAATTATGAGGAGAACGGGAATAGGAGAAACTTGACAAGTCCAGTAATGAGGTAGGAATAAACATTGTACTGGGCGTAAAACGATCCAAACCAGAAGCCATACATTCCAATGATTTTCGCCCAAGAGAAGGCGATTCGTGTTCCTTTCTCGCCTGGATTGAATTCACCAGTGGCGTAGTAGCGAGCTGAAAGAAGAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>435 251 160 66 46 27 15</canonical_bands>
                <polymorphic_bands>462 251 160 66 46 15</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>435 251 160 66 46 27 15</canonical_bands>
                <polymorphic_bands>462 251 160 66 46 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATATGTGTACTTCGAATTGTT</pcr_primer_p1>
		<pcr_primer_p2>GTCAGTTATCTTCCTCTGGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CGATATGTGTACTTCGAATTGTTTCATTCGCTCCGCCCATTGTCCCAAATGCACCCGTTTTTTATATCACACTGATGCTTCTCGATTCATATTCTCGGGATTCTCCGCTCTATCATTTTACTATTGATTCGGAGAGTATTCAGGTGTTTCCCAATTTATGAATATGTTCGACGAAATTCTTGATTTTATTATATGAGAGATGTGAGAAGAATAACAACCATAAGTTTACCAGAGGAAGATAACTGAC</canonical_amplicon>
		<polymorphic_amplicon>CGATATGTGTACTTCGAATTGTTTCATTCGCTCCGCCCATTGTCCCAAATGCACCCGTTTTTTATATCACACTGATGCTTCTCGATTCATATTCTCGGGATTCTCCGCTCTATCATTTTACTATTGRTTCGGAGAGTATTCAGGTGTTTCCCAATTTATGAATATGTTCGACGAAATTCTTGATTTTATTATATGAGAGATGTGAGAAGAATAACAACCATAAGTTTACCAGAGGAAGATAACTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22493</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>202976</contig_pos>
        <strand>+</strand>
        <context>CCTGTACAAT[A/G]ATGACTCTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCATAACAATATCTCTCAGTCAATCGATTTTTTACTAGCCTGTACAAT</left_flank>
        <right_flank>ATGACTCTTGATAGCAATTCGATATAAACTTCAATCAAAGTTGCCTTGTC</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTTGCAGTCTATGGAATTGGAAATGGACTGCGCAAAAAACTATACAACTCAATGAGAATTACAAACTAAAAAACACAGCAGACTCACACACAAGAAACGACCAAAAAGCAGTGGGAGGAAGGGATATATCAATTAAACTGGCCAGTTGCCGACACTCTTGGCATAGACGTCACAAGTTGTCCTATAGATTTTCAATCAGCACTTTTTTATCTTTCACAGTTTCCATTTTCAAGTTCCTGTCTTTAACCCAAATTTCCCTGAATAATTGAAAAAAAAATTGCATTCAAATTGGTGCAAAAATTCCAGTGTGGATTTACGCTAAACAAAGCTCGATGCGGGATAGCGGAGTGTTGTTGTTTTATTCTTTTTTTTTTGACATTTTTCGTACCGGAAATGATGAAACTTTCGGTTTCTGTGAACTGATTCTAAAATTTTTTCATCTAAATTAATCATAACAATATCTCTCAGTCAATCGATTTTTTACTAGCCTGTACAATAATGACTCTTGATAGCAATTCGATATAAACTTCAATCAAAGTTGCCTTGTCGTGTTTTAATTTTCTGCAAAAACTAGTTTATTTTGTTCCAGATGCCGTCCGCAGTCACGAGCACTTCAAACTCATCCGATGTCGGTCATAGTCAAACATTTAAACGAATAGCAACAAAAGTAAGACTCAAAAAAGTATTTATTAACAAAAATGAATTTGTTTACAGTATTTTTTATCATGTACAGCTGCGTTAGTAGCCGAAACAGTCACATATCCTTTGGATATAACAAAAACACGACTGCAAATAGCCAAAAATAAGTTCACCAGAGGAGGTTAGTCCTCGAGAAATCGAGAGCGTTTGGAAGAGAATTGAAATATACAGGAATGGTCCAAGTGACATATGACATCATTCGAAGAGAAGGAGCAATGGCATTATGGACAGGAGTAGCGCCAGCTATCACGAGACATTACATTTATACAGGAATCCGAATGGGTGCATATGAGCAAATT</canonical>
            <polymorphic>CACTTGCAGTCTATGGAATTGGAAATGGACTGCGCAAAAAACTATACAACTCAATGAGAATTACAAACTAAAAAACACAGCAGACTCACACACAAGAAACGACCAAAAAGCAGTGGGAGGAAGGGATATATCAATTAAACTGGCCAGTTGCCGACACTCTTGGCATAGACGTCACAAGTTGTCCTATAGATTTTCAATCAGCACTTTTTTATCTTTCACAGTTTCCATTTTCAAGTTCCTGTCTTTAACCCAAATTTCCCTGAATAATTGAAAAAAAAATTGCATTCAAATTGGTGCAAAAATTCCAGTGTGGATTTACGCTAAACAAAGCTCGATGCGGGATAGCGGAGTGTTGTTGTTTTATTCTTTTTTTTTTGACATTTTTCGTACCGGAAATGATGAAACTTTCGGTTTCTGTGAACTGATTCTAAAATTTTTTCATCTAAATTAATCATAACAATATCTCTCAGTCAATCGATTTTTTACTAGCCTGTACAATRATGACTCTTGATAGCAATTCGATATAAACTTCAATCAAAGTTGCCTTGTCGTGTTTTAATTTTCTGCAAAAACTAGTTTATTTTGTTCCAGATGCCGTCCGCAGTCACGAGCACTTCAAACTCATCCGATGTCGGTCATAGTCAAACATTTAAACGAATAGCAACAAAAGTAAGACTCAAAAAAGTATTTATTAACAAAAATGAATTTGTTTACAGTATTTTTTATCATGTACAGCTGCGTTAGTAGCCGAAACAGTCACATATCCTTTGGATATAACAAAAACACGACTGCAAATAGCCAAAAATAAGTTCACCAGAGGAGGTTAGTCCTCGAGAAATCGAGAGCGTTTGGAAGAGAATTGAAATATACAGGAATGGTCCAAGTGACATATGACATCATTCGAAGAGAAGGAGCAATGGCATTATGGACAGGAGTAGCGCCAGCTATCACGAGACATTACATTTATACAGGAATCCGAATGGGTGCATATGAGCAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTCTGTGAACTGATTCTAAA</pcr_primer_p1>
		<pcr_primer_p2>CGTTTAAATGTTTGACTATGACC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGTTTCTGTGAACTGATTCTAAAATTTTTTCATCTAAATTAATCATAACAATATCTCTCAGTCAATCGATTTTTTACTAGCCTGTACAATAATGACTCTTGATAGCAATTCGATATAAACTTCAATCAAAGTTGCCTTGTCGTGTTTTAATTTTCTGCAAAAACTAGTTTATTTTGTTCCAGATGCCGTCCGCAGTCACGAGCACTTCAAACTCATCCGATGTCGGTCATAGTCAAACATTTAAACG</canonical_amplicon>
		<polymorphic_amplicon>GGTTTCTGTGAACTGATTCTAAAATTTTTTCATCTAAATTAATCATAACAATATCTCTCAGTCAATCGATTTTTTACTAGCCTGTACAATRATGACTCTTGATAGCAATTCGATATAAACTTCAATCAAAGTTGCCTTGTCGTGTTTTAATTTTCTGCAAAAACTAGTTTATTTTGTTCCAGATGCCGTCCGCAGTCACGAGCACTTCAAACTCATCCGATGTCGGTCATAGTCAAACATTTAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22494</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>206011</contig_pos>
        <strand>+</strand>
        <context>CCGGCCCAGG[C/G]CGAGAAGTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAAACAGGAAAAAATTACTGGAAACCCGGTCCGATATGGACCGGCCCAGG</left_flank>
        <right_flank>CGAGAAGTTTTTGAGAAACCCGCCCCTTTGCGAGTATGATAATTATCAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTAGAGTGGCGGGGGGGGGGGGTCCTGTTATTAGCGTTGTTATGATATCTTTCGTCATAGTTTGAAGATAACAGAACAAGAGTTCTGCCAACATTAACTAGATTTTTTCGAAATTTTTCATCGAAATTTATTGTCTAGACACTGTATACAGTATAGTAGACCTTGTGATGTTCCTATCTTCGCCCATATCAATTTCTCTGCGTCTCTCATCTCTTATCTCTTCCGTCACATCATCACCAATCGTCGTGTGATTCGCGTGAATNGACACGCGGCATAAAAATTACCATACTTGAAACATCAGAGCCCCGGGGTTTTCACATGTGAAAAAAACTGAATTTTCAGAAAATTTGCATATGTTTTTGGTAAAATATCATCTTTACTCCGTTGTTTGCAAACTTTCTGTTTGGCAGAAGTTTTCATATTTTTAACTGACCCCAAAATTTTTATAAACAGGAAAAAATTACTGGAAACCCGGTCCGATATGGACCGGCCCAGGGCGAGAAGTTTTTGAGAAACCCGCCCCTTTGCGAGTATGATAATTATCAAACTTTATCTTCTAGAACTGGGAGTGTGGGAACGAATCAATTCACATCGTGCCAAGAAAGTGAATCGATTATTCGTTTTCGATAGTTGCTCAACGTCGGAAATTGAATTTGAAAGAGGCCAGAATGAAGAGGTCGCATATATTATTGAAAACGATTTGATCGTCGGATCCCTCTATGAAAAACTAGCGGATTATAAGAATGTCGATGTGAAAACTGGAGCAAAAGTTGAAGTTTGTTTCATTCCGAACGGATTGGAGAATATGGCAACAATTAAATTGGAGAATGGAGATGTTATCGAGACAAGTCTTTTAGTAAGTATTATTCTGGTACAAAAGTGTGGAACCGAAACGCATGTGGCCGTAGGTCTCACAACTACCGTAACTCAGGCCCTGAAACAAGCGGTAAAGATCTACTGACATACGCAGTGTAGAAAAAAATTGCTTTTCGTTTAT</canonical>
            <polymorphic>AAATTAGAGTGGCGGGGGGGGGGGGTCCTGTTATTAGCGTTGTTATGATATCTTTCGTCATAGTTTGAAGATAACAGAACAAGAGTTCTGCCAACATTAACTAGATTTTTTCGAAATTTTTCATCGAAATTTATTGTCTAGACACTGTATACAGTATAGTAGACCTTGTGATGTTCCTATCTTCGCCCATATCAATTTCTCTGCGTCTCTCATCTCTTATCTCTTCCGTCACATCATCACCAATCGTCGTGTGATTCGCGTGAATNGACACGCGGCATAAAAATTACCATACTTGAAACATCAGAGCCCCGGGGTTTTCACATGTGAAAAAAACTGAATTTTCAGAAAATTTGCATATGTTTTTGGTAAAATATCATCTTTACTCCGTTGTTTGCAAACTTTCTGTTTGGCAGAAGTTTTCATATTTTTAACTGACCCCAAAATTTTTATAAACAGGAAAAAATTACTGGAAACCCGGTCCGATATGGACCGGCCCAGGSCGAGAAGTTTTTGAGAAACCCGCCCCTTTGCGAGTATGATAATTATCAAACTTTATCTTCTAGAACTGGGAGTGTGGGAACGAATCAATTCACATCGTGCCAAGAAAGTGAATCGATTATTCGTTTTCGATAGTTGCTCAACGTCGGAAATTGAATTTGAAAGAGGCCAGAATGAAGAGGTCGCATATATTATTGAAAACGATTTGATCGTCGGATCCCTCTATGAAAAACTAGCGGATTATAAGAATGTCGATGTGAAAACTGGAGCAAAAGTTGAAGTTTGTTTCATTCCGAACGGATTGGAGAATATGGCAACAATTAAATTGGAGAATGGAGATGTTATCGAGACAAGTCTTTTAGTAAGTATTATTCTGGTACAAAAGTGTGGAACCGAAACGCATGTGGCCGTAGGTCTCACAACTACCGTAACTCAGGCCCTGAAACAAGCGGTAAAGATCTACTGACATACGCAGTGTAGAAAAAAATTGCTTTTCGTTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCATCTTTACTCCGTTGTTTG</pcr_primer_p1>
		<pcr_primer_p2>CGAATAATCGATTCACTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATCATCTTTACTCCGTTGTTTGCAAACTTTCTGTTTGGCAGAAGTTTTCATATTTTTAACTGACCCCAAAATTTTTATAAACAGGAAAAAATTACTGGAAACCCGGTCCGATATGGACCGGCCCAGGGCGAGAAGTTTTTGAGAAACCCGCCCCTTTGCGAGTATGATAATTATCAAACTTTATCTTCTAGAACTGGGAGTGTGGGAACGAATCAATTCACATCGTGCCAAGAAAGTGAATCGATTATTCG</canonical_amplicon>
		<polymorphic_amplicon>TATCATCTTTACTCCGTTGTTTGCAAACTTTCTGTTTGGCAGAAGTTTTCATATTTTTAACTGACCCCAAAATTTTTATAAACAGGAAAAAATTACTGGAAACCCGGTCCGATATGGACCGGCCCAGGSCGAGAAGTTTTTGAGAAACCCGCCCCTTTGCGAGTATGATAATTATCAAACTTTATCTTCTAGAACTGGGAGTGTGGGAACGAATCAATTCACATCGTGCCAAGAAAGTGAATCGATTATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22495</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>205995</contig_pos>
        <strand>+</strand>
        <context>CCCGGTCCGA[A/T]ATGGACCGGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACCCCAAAATTTTTATAAACAGGAAAAAATTACTGGAAACCCGGTCCGA</left_flank>
        <right_flank>ATGGACCGGCCCAGGGCGAGAAGTTTTTGAGAAACCCGCCCCTTTGCGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGGCTCAAAGTAAAAAATTAGAGTGGCGGGGGGGGGGGGTCCTGTTATTAGCGTTGTTATGATATCTTTCGTCATAGTTTGAAGATAACAGAACAAGAGTTCTGCCAACATTAACTAGATTTTTTCGAAATTTTTCATCGAAATTTATTGTCTAGACACTGTATACAGTATAGTAGACCTTGTGATGTTCCTATCTTCGCCCATATCAATTTCTCTGCGTCTCTCATCTCTTATCTCTTCCGTCACATCATCACCAATCGTCGTGTGATTCGCGTGAATNGACACGCGGCATAAAAATTACCATACTTGAAACATCAGAGCCCCGGGGTTTTCACATGTGAAAAAAACTGAATTTTCAGAAAATTTGCATATGTTTTTGGTAAAATATCATCTTTACTCCGTTGTTTGCAAACTTTCTGTTTGGCAGAAGTTTTCATATTTTTAACTGACCCCAAAATTTTTATAAACAGGAAAAAATTACTGGAAACCCGGTCCGATATGGACCGGCCCAGGGCGAGAAGTTTTTGAGAAACCCGCCCCTTTGCGAGTATGATAATTATCAAACTTTATCTTCTAGAACTGGGAGTGTGGGAACGAATCAATTCACATCGTGCCAAGAAAGTGAATCGATTATTCGTTTTCGATAGTTGCTCAACGTCGGAAATTGAATTTGAAAGAGGCCAGAATGAAGAGGTCGCATATATTATTGAAAACGATTTGATCGTCGGATCCCTCTATGAAAAACTAGCGGATTATAAGAATGTCGATGTGAAAACTGGAGCAAAAGTTGAAGTTTGTTTCATTCCGAACGGATTGGAGAATATGGCAACAATTAAATTGGAGAATGGAGATGTTATCGAGACAAGTCTTTTAGTAAGTATTATTCTGGTACAAAAGTGTGGAACCGAAACGCATGTGGCCGTAGGTCTCACAACTACCGTAACTCAGGCCCTGAAACAAGCGGTAAAGATCTACTGACATACGCAGTGTAGAAAAAA</canonical>
            <polymorphic>ATTGGCTCAAAGTAAAAAATTAGAGTGGCGGGGGGGGGGGGTCCTGTTATTAGCGTTGTTATGATATCTTTCGTCATAGTTTGAAGATAACAGAACAAGAGTTCTGCCAACATTAACTAGATTTTTTCGAAATTTTTCATCGAAATTTATTGTCTAGACACTGTATACAGTATAGTAGACCTTGTGATGTTCCTATCTTCGCCCATATCAATTTCTCTGCGTCTCTCATCTCTTATCTCTTCCGTCACATCATCACCAATCGTCGTGTGATTCGCGTGAATNGACACGCGGCATAAAAATTACCATACTTGAAACATCAGAGCCCCGGGGTTTTCACATGTGAAAAAAACTGAATTTTCAGAAAATTTGCATATGTTTTTGGTAAAATATCATCTTTACTCCGTTGTTTGCAAACTTTCTGTTTGGCAGAAGTTTTCATATTTTTAACTGACCCCAAAATTTTTATAAACAGGAAAAAATTACTGGAAACCCGGTCCGAWATGGACCGGCCCAGGGCGAGAAGTTTTTGAGAAACCCGCCCCTTTGCGAGTATGATAATTATCAAACTTTATCTTCTAGAACTGGGAGTGTGGGAACGAATCAATTCACATCGTGCCAAGAAAGTGAATCGATTATTCGTTTTCGATAGTTGCTCAACGTCGGAAATTGAATTTGAAAGAGGCCAGAATGAAGAGGTCGCATATATTATTGAAAACGATTTGATCGTCGGATCCCTCTATGAAAAACTAGCGGATTATAAGAATGTCGATGTGAAAACTGGAGCAAAAGTTGAAGTTTGTTTCATTCCGAACGGATTGGAGAATATGGCAACAATTAAATTGGAGAATGGAGATGTTATCGAGACAAGTCTTTTAGTAAGTATTATTCTGGTACAAAAGTGTGGAACCGAAACGCATGTGGCCGTAGGTCTCACAACTACCGTAACTCAGGCCCTGAAACAAGCGGTAAAGATCTACTGACATACGCAGTGTAGAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCATCTTTACTCCGTTGTTTG</pcr_primer_p1>
		<pcr_primer_p2>CGAATAATCGATTCACTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATCATCTTTACTCCGTTGTTTGCAAACTTTCTGTTTGGCAGAAGTTTTCATATTTTTAACTGACCCCAAAATTTTTATAAACAGGAAAAAATTACTGGAAACCCGGTCCGATATGGACCGGCCCAGGGCGAGAAGTTTTTGAGAAACCCGCCCCTTTGCGAGTATGATAATTATCAAACTTTATCTTCTAGAACTGGGAGTGTGGGAACGAATCAATTCACATCGTGCCAAGAAAGTGAATCGATTATTCG</canonical_amplicon>
		<polymorphic_amplicon>TATCATCTTTACTCCGTTGTTTGCAAACTTTCTGTTTGGCAGAAGTTTTCATATTTTTAACTGACCCCAAAATTTTTATAAACAGGAAAAAATTACTGGAAACCCGGTCCGAWATGGACCGGCCCAGGGCGAGAAGTTTTTGAGAAACCCGCCCCTTTGCGAGTATGATAATTATCAAACTTTATCTTCTAGAACTGGGAGTGTGGGAACGAATCAATTCACATCGTGCCAAGAAAGTGAATCGATTATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22496</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>207973</contig_pos>
        <strand>+</strand>
        <context>TACAAATTCT[C/G]GACAAAATAC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TATTTTGTAGGACAAGGTGTGAATCTTGGTTGGAGCGATGTACAAATTCT</left_flank>
        <right_flank>GACAAAATACTTGGAGATGCAGTACGAGAAGGAGCAGATATCGGAAGCAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGTGGTCCACAAGTCCCGAAGAAGCACAACGATTAAAGCAACTTCCAGCTGATCAGTTTGTAGATGAACTTAATTCTGCATTGGTTAGTTTTGAATTTCCTAAATCTGACCGAAAAAGAAACTATTTCAGTTCTCACAAGACGACCAGCTGCCATACGTGAATCAGGCAATCTTCGCTTTGAACAAAATGAATCCATTCCGAACAGAAACATTTGGACGCAAAGCAGAAGGAACTACACCTCCACACATCATTTCAGTTCAAGACAAAAGTCGAGCATCGTTTCCTCTTGGCTTTGGAAATGCACATAGGTATTTAAGAGAGAAATTCAATTACAGTAATTCATTCAATTCAGCTATATCACCACACGATGCGCGTTGATTGGGGATGCTGCTCATAGAATGCATCCACTTGCAGGTTAGCACAATCTCTGGTTCTCATTACGGTGATATTTTGTAGGACAAGGTGTGAATCTTGGTTGGAGCGATGTACAAATTCTGGACAAAATACTTGGAGATGCAGTACGAGAAGGAGCAGATATCGGAAGCATCACATATCTTCGAGAATACGATTCAGCTGCACAGAAGCATAATCTGCCCGTTATGGTTTCTGTCGATCTGCTAAATCGAATCTACCGTACCGATGCGCCCGCGATTGTTGCTGCTCGAGCGTTTGGCCTGAACGCATTTAATTCTCTGGGACCTGTCAAAAACTTTCTCATGAATTATTTATCAGCACATCGGTGAACAATTTCCGGTTTATTGTTGGTCAGTATAAATTAGTTTTCTGTTTATGTTGATAGTTTTTGAATAAATGTAGTGTTTCTGTTAAAATCGACTTCAAAGTTTTCAATACGTGCACTTCATCGGACATGGTTCTGGAGTGTCATGATGGTTAGAATGTGAATTAGGAATTCTCTTTATCTAGAGCCTGTCATTAAGGTTAGAACTTGCGTGTCATTAAGGTTAGAACTTGAAAAAAATGCACTCTGTTTCAGAAT</canonical>
            <polymorphic>GACGTGGTCCACAAGTCCCGAAGAAGCACAACGATTAAAGCAACTTCCAGCTGATCAGTTTGTAGATGAACTTAATTCTGCATTGGTTAGTTTTGAATTTCCTAAATCTGACCGAAAAAGAAACTATTTCAGTTCTCACAAGACGACCAGCTGCCATACGTGAATCAGGCAATCTTCGCTTTGAACAAAATGAATCCATTCCGAACAGAAACATTTGGACGCAAAGCAGAAGGAACTACACCTCCACACATCATTTCAGTTCAAGACAAAAGTCGAGCATCGTTTCCTCTTGGCTTTGGAAATGCACATAGGTATTTAAGAGAGAAATTCAATTACAGTAATTCATTCAATTCAGCTATATCACCACACGATGCGCGTTGATTGGGGATGCTGCTCATAGAATGCATCCACTTGCAGGTTAGCACAATCTCTGGTTCTCATTACGGTGATATTTTGTAGGACAAGGTGTGAATCTTGGTTGGAGCGATGTACAAATTCTSGACAAAATACTTGGAGATGCAGTACGAGAAGGAGCAGATATCGGAAGCATCACATATCTTCGAGAATACGATTCAGCTGCACAGAAGCATAATCTGCCCGTTATGGTTTCTGTCGATCTGCTAAATCGAATCTACCGTACCGATGCGCCCGCGATTGTTGCTGCTCGAGCGTTTGGCCTGAACGCATTTAATTCTCTGGGACCTGTCAAAAACTTTCTCATGAATTATTTATCAGCACATCGGTGAACAATTTCCGGTTTATTGTTGGTCAGTATAAATTAGTTTTCTGTTTATGTTGATAGTTTTTGAATAAATGTAGTGTTTCTGTTAAAATCGACTTCAAAGTTTTCAATACGTGCACTTCATCGGACATGGTTCTGGAGTGTCATGATGGTTAGAATGTGAATTAGGAATTCTCTTTATCTAGAGCCTGTCATTAAGGTTAGAACTTGCGTGTCATTAAGGTTAGAACTTGAAAAAAATGCACTCTGTTTCAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGTAATTCATTCAATTCAGCTA</pcr_primer_p1>
		<pcr_primer_p2>AATCGTATTCTCGAAGATATGTG</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ACAGTAATTCATTCAATTCAGCTATATCACCACACGATGCGCGTTGATTGGGGATGCTGCTCATAGAATGCATCCACTTGCAGGTTAGCACAATCTCTGGTTCTCATTACGGTGATATTTTGTAGGACAAGGTGTGAATCTTGGTTGGAGCGATGTACAAATTCTGGACAAAATACTTGGAGATGCAGTACGAGAAGGAGCAGATATCGGAAGCATCACATATCTTCGAGAATACGATT</canonical_amplicon>
		<polymorphic_amplicon>ACAGTAATTCATTCAATTCAGCTATATCACCACACGATGCGCGTTGATTGGGGATGCTGCTCATAGAATGCATCCACTTGCAGGTTAGCACAATCTCTGGTTCTCATTACGGTGATATTTTGTAGGACAAGGTGTGAATCTTGGTTGGAGCGATGTACAAATTCTSGACAAAATACTTGGAGATGCAGTACGAGAAGGAGCAGATATCGGAAGCATCACATATCTTCGAGAATACGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22497</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>208000</contig_pos>
        <strand>+</strand>
        <context>ATGCAGTACG[A/T]GAAGGAGCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTTGGAGCGATGTACAAATTCTGGACAAAATACTTGGAGATGCAGTACG</left_flank>
        <right_flank>GAAGGAGCAGATATCGGAAGCATCACATATCTTCGAGAATACGATTCAGC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAACGATTAAAGCAACTTCCAGCTGATCAGTTTGTAGATGAACTTAATTCTGCATTGGTTAGTTTTGAATTTCCTAAATCTGACCGAAAAAGAAACTATTTCAGTTCTCACAAGACGACCAGCTGCCATACGTGAATCAGGCAATCTTCGCTTTGAACAAAATGAATCCATTCCGAACAGAAACATTTGGACGCAAAGCAGAAGGAACTACACCTCCACACATCATTTCAGTTCAAGACAAAAGTCGAGCATCGTTTCCTCTTGGCTTTGGAAATGCACATAGGTATTTAAGAGAGAAATTCAATTACAGTAATTCATTCAATTCAGCTATATCACCACACGATGCGCGTTGATTGGGGATGCTGCTCATAGAATGCATCCACTTGCAGGTTAGCACAATCTCTGGTTCTCATTACGGTGATATTTTGTAGGACAAGGTGTGAATCTTGGTTGGAGCGATGTACAAATTCTGGACAAAATACTTGGAGATGCAGTACGAGAAGGAGCAGATATCGGAAGCATCACATATCTTCGAGAATACGATTCAGCTGCACAGAAGCATAATCTGCCCGTTATGGTTTCTGTCGATCTGCTAAATCGAATCTACCGTACCGATGCGCCCGCGATTGTTGCTGCTCGAGCGTTTGGCCTGAACGCATTTAATTCTCTGGGACCTGTCAAAAACTTTCTCATGAATTATTTATCAGCACATCGGTGAACAATTTCCGGTTTATTGTTGGTCAGTATAAATTAGTTTTCTGTTTATGTTGATAGTTTTTGAATAAATGTAGTGTTTCTGTTAAAATCGACTTCAAAGTTTTCAATACGTGCACTTCATCGGACATGGTTCTGGAGTGTCATGATGGTTAGAATGTGAATTAGGAATTCTCTTTATCTAGAGCCTGTCATTAAGGTTAGAACTTGCGTGTCATTAAGGTTAGAACTTGAAAAAAATGCACTCTGTTTCAGAATTTCATGTGGGACTTCATACTGATTCTA</canonical>
            <polymorphic>ACAACGATTAAAGCAACTTCCAGCTGATCAGTTTGTAGATGAACTTAATTCTGCATTGGTTAGTTTTGAATTTCCTAAATCTGACCGAAAAAGAAACTATTTCAGTTCTCACAAGACGACCAGCTGCCATACGTGAATCAGGCAATCTTCGCTTTGAACAAAATGAATCCATTCCGAACAGAAACATTTGGACGCAAAGCAGAAGGAACTACACCTCCACACATCATTTCAGTTCAAGACAAAAGTCGAGCATCGTTTCCTCTTGGCTTTGGAAATGCACATAGGTATTTAAGAGAGAAATTCAATTACAGTAATTCATTCAATTCAGCTATATCACCACACGATGCGCGTTGATTGGGGATGCTGCTCATAGAATGCATCCACTTGCAGGTTAGCACAATCTCTGGTTCTCATTACGGTGATATTTTGTAGGACAAGGTGTGAATCTTGGTTGGAGCGATGTACAAATTCTGGACAAAATACTTGGAGATGCAGTACGWGAAGGAGCAGATATCGGAAGCATCACATATCTTCGAGAATACGATTCAGCTGCACAGAAGCATAATCTGCCCGTTATGGTTTCTGTCGATCTGCTAAATCGAATCTACCGTACCGATGCGCCCGCGATTGTTGCTGCTCGAGCGTTTGGCCTGAACGCATTTAATTCTCTGGGACCTGTCAAAAACTTTCTCATGAATTATTTATCAGCACATCGGTGAACAATTTCCGGTTTATTGTTGGTCAGTATAAATTAGTTTTCTGTTTATGTTGATAGTTTTTGAATAAATGTAGTGTTTCTGTTAAAATCGACTTCAAAGTTTTCAATACGTGCACTTCATCGGACATGGTTCTGGAGTGTCATGATGGTTAGAATGTGAATTAGGAATTCTCTTTATCTAGAGCCTGTCATTAAGGTTAGAACTTGCGTGTCATTAAGGTTAGAACTTGAAAAAAATGCACTCTGTTTCAGAATTTCATGTGGGACTTCATACTGATTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAGGACAAGGTGTGAATCTT</pcr_primer_p1>
		<pcr_primer_p2>ATTCATGAGAAAGTTTTTGACAG</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>TGTAGGACAAGGTGTGAATCTTGGTTGGAGCGATGTACAAATTCTGGACAAAATACTTGGAGATGCAGTACGAGAAGGAGCAGATATCGGAAGCATCACATATCTTCGAGAATACGATTCAGCTGCACAGAAGCATAATCTGCCCGTTATGGTTTCTGTCGATCTGCTAAATCGAATCTACCGTACCGATGCGCCCGCGATTGTTGCTGCTCGAGCGTTTGGCCTGAACGCATTTAATTCTCTGGGACCTGTCAAAAACTTTCTCATGAAT</canonical_amplicon>
		<polymorphic_amplicon>TGTAGGACAAGGTGTGAATCTTGGTTGGAGCGATGTACAAATTCTGGACAAAATACTTGGAGATGCAGTACGWGAAGGAGCAGATATCGGAAGCATCACATATCTTCGAGAATACGATTCAGCTGCACAGAAGCATAATCTGCCCGTTATGGTTTCTGTCGATCTGCTAAATCGAATCTACCGTACCGATGCGCCCGCGATTGTTGCTGCTCGAGCGTTTGGCCTGAACGCATTTAATTCTCTGGGACCTGTCAAAAACTTTCTCATGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22498</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>208075</contig_pos>
        <strand>+</strand>
        <context>ATCTGCCCGT[A/T]ATGGTTTCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACATATCTTCGAGAATACGATTCAGCTGCACAGAAGCATAATCTGCCCGT</left_flank>
        <right_flank>ATGGTTTCTGTCGATCTGCTAAATCGAATCTACCGTACCGATGCGCCCGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATCTGACCGAAAAAGAAACTATTTCAGTTCTCACAAGACGACCAGCTGCCATACGTGAATCAGGCAATCTTCGCTTTGAACAAAATGAATCCATTCCGAACAGAAACATTTGGACGCAAAGCAGAAGGAACTACACCTCCACACATCATTTCAGTTCAAGACAAAAGTCGAGCATCGTTTCCTCTTGGCTTTGGAAATGCACATAGGTATTTAAGAGAGAAATTCAATTACAGTAATTCATTCAATTCAGCTATATCACCACACGATGCGCGTTGATTGGGGATGCTGCTCATAGAATGCATCCACTTGCAGGTTAGCACAATCTCTGGTTCTCATTACGGTGATATTTTGTAGGACAAGGTGTGAATCTTGGTTGGAGCGATGTACAAATTCTGGACAAAATACTTGGAGATGCAGTACGAGAAGGAGCAGATATCGGAAGCATCACATATCTTCGAGAATACGATTCAGCTGCACAGAAGCATAATCTGCCCGTTATGGTTTCTGTCGATCTGCTAAATCGAATCTACCGTACCGATGCGCCCGCGATTGTTGCTGCTCGAGCGTTTGGCCTGAACGCATTTAATTCTCTGGGACCTGTCAAAAACTTTCTCATGAATTATTTATCAGCACATCGGTGAACAATTTCCGGTTTATTGTTGGTCAGTATAAATTAGTTTTCTGTTTATGTTGATAGTTTTTGAATAAATGTAGTGTTTCTGTTAAAATCGACTTCAAAGTTTTCAATACGTGCACTTCATCGGACATGGTTCTGGAGTGTCATGATGGTTAGAATGTGAATTAGGAATTCTCTTTATCTAGAGCCTGTCATTAAGGTTAGAACTTGCGTGTCATTAAGGTTAGAACTTGAAAAAAATGCACTCTGTTTCAGAATTTCATGTGGGACTTCATACTGATTCTACGAATTATTGAACTCAATATGGTCCTAATTTTCCCTTCTTTTGTGAAGAAAAATAAATGGCTTCTGAATTAGGCA</canonical>
            <polymorphic>TAAATCTGACCGAAAAAGAAACTATTTCAGTTCTCACAAGACGACCAGCTGCCATACGTGAATCAGGCAATCTTCGCTTTGAACAAAATGAATCCATTCCGAACAGAAACATTTGGACGCAAAGCAGAAGGAACTACACCTCCACACATCATTTCAGTTCAAGACAAAAGTCGAGCATCGTTTCCTCTTGGCTTTGGAAATGCACATAGGTATTTAAGAGAGAAATTCAATTACAGTAATTCATTCAATTCAGCTATATCACCACACGATGCGCGTTGATTGGGGATGCTGCTCATAGAATGCATCCACTTGCAGGTTAGCACAATCTCTGGTTCTCATTACGGTGATATTTTGTAGGACAAGGTGTGAATCTTGGTTGGAGCGATGTACAAATTCTGGACAAAATACTTGGAGATGCAGTACGAGAAGGAGCAGATATCGGAAGCATCACATATCTTCGAGAATACGATTCAGCTGCACAGAAGCATAATCTGCCCGTWATGGTTTCTGTCGATCTGCTAAATCGAATCTACCGTACCGATGCGCCCGCGATTGTTGCTGCTCGAGCGTTTGGCCTGAACGCATTTAATTCTCTGGGACCTGTCAAAAACTTTCTCATGAATTATTTATCAGCACATCGGTGAACAATTTCCGGTTTATTGTTGGTCAGTATAAATTAGTTTTCTGTTTATGTTGATAGTTTTTGAATAAATGTAGTGTTTCTGTTAAAATCGACTTCAAAGTTTTCAATACGTGCACTTCATCGGACATGGTTCTGGAGTGTCATGATGGTTAGAATGTGAATTAGGAATTCTCTTTATCTAGAGCCTGTCATTAAGGTTAGAACTTGCGTGTCATTAAGGTTAGAACTTGAAAAAAATGCACTCTGTTTCAGAATTTCATGTGGGACTTCATACTGATTCTACGAATTATTGAACTCAATATGGTCCTAATTTTCCCTTCTTTTGTGAAGAAAAATAAATGGCTTCTGAATTAGGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGAGCGATGTACAAATTC</pcr_primer_p1>
		<pcr_primer_p2>ATTCATGAGAAAGTTTTTGACAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTGGAGCGATGTACAAATTCTGGACAAAATACTTGGAGATGCAGTACGAGAAGGAGCAGATATCGGAAGCATCACATATCTTCGAGAATACGATTCAGCTGCACAGAAGCATAATCTGCCCGTTATGGTTTCTGTCGATCTGCTAAATCGAATCTACCGTACCGATGCGCCCGCGATTGTTGCTGCTCGAGCGTTTGGCCTGAACGCATTTAATTCTCTGGGACCTGTCAAAAACTTTCTCATGAAT</canonical_amplicon>
		<polymorphic_amplicon>TTGGAGCGATGTACAAATTCTGGACAAAATACTTGGAGATGCAGTACGAGAAGGAGCAGATATCGGAAGCATCACATATCTTCGAGAATACGATTCAGCTGCACAGAAGCATAATCTGCCCGTWATGGTTTCTGTCGATCTGCTAAATCGAATCTACCGTACCGATGCGCCCGCGATTGTTGCTGCTCGAGCGTTTGGCCTGAACGCATTTAATTCTCTGGGACCTGTCAAAAACTTTCTCATGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22499</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>208093</contig_pos>
        <strand>+</strand>
        <context>CTGTCGATCT[A/G]CTAAATCGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTCAGCTGCACAGAAGCATAATCTGCCCGTTATGGTTTCTGTCGATCT</left_flank>
        <right_flank>CTAAATCGAATCTACCGTACCGATGCGCCCGCGATTGTTGCTGCTCGAGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTATTTCAGTTCTCACAAGACGACCAGCTGCCATACGTGAATCAGGCAATCTTCGCTTTGAACAAAATGAATCCATTCCGAACAGAAACATTTGGACGCAAAGCAGAAGGAACTACACCTCCACACATCATTTCAGTTCAAGACAAAAGTCGAGCATCGTTTCCTCTTGGCTTTGGAAATGCACATAGGTATTTAAGAGAGAAATTCAATTACAGTAATTCATTCAATTCAGCTATATCACCACACGATGCGCGTTGATTGGGGATGCTGCTCATAGAATGCATCCACTTGCAGGTTAGCACAATCTCTGGTTCTCATTACGGTGATATTTTGTAGGACAAGGTGTGAATCTTGGTTGGAGCGATGTACAAATTCTGGACAAAATACTTGGAGATGCAGTACGAGAAGGAGCAGATATCGGAAGCATCACATATCTTCGAGAATACGATTCAGCTGCACAGAAGCATAATCTGCCCGTTATGGTTTCTGTCGATCTGCTAAATCGAATCTACCGTACCGATGCGCCCGCGATTGTTGCTGCTCGAGCGTTTGGCCTGAACGCATTTAATTCTCTGGGACCTGTCAAAAACTTTCTCATGAATTATTTATCAGCACATCGGTGAACAATTTCCGGTTTATTGTTGGTCAGTATAAATTAGTTTTCTGTTTATGTTGATAGTTTTTGAATAAATGTAGTGTTTCTGTTAAAATCGACTTCAAAGTTTTCAATACGTGCACTTCATCGGACATGGTTCTGGAGTGTCATGATGGTTAGAATGTGAATTAGGAATTCTCTTTATCTAGAGCCTGTCATTAAGGTTAGAACTTGCGTGTCATTAAGGTTAGAACTTGAAAAAAATGCACTCTGTTTCAGAATTTCATGTGGGACTTCATACTGATTCTACGAATTATTGAACTCAATATGGTCCTAATTTTCCCTTCTTTTGTGAAGAAAAATAAATGGCTTCTGAATTAGGCAGAATCCAGGGCCTTATTA</canonical>
            <polymorphic>AAACTATTTCAGTTCTCACAAGACGACCAGCTGCCATACGTGAATCAGGCAATCTTCGCTTTGAACAAAATGAATCCATTCCGAACAGAAACATTTGGACGCAAAGCAGAAGGAACTACACCTCCACACATCATTTCAGTTCAAGACAAAAGTCGAGCATCGTTTCCTCTTGGCTTTGGAAATGCACATAGGTATTTAAGAGAGAAATTCAATTACAGTAATTCATTCAATTCAGCTATATCACCACACGATGCGCGTTGATTGGGGATGCTGCTCATAGAATGCATCCACTTGCAGGTTAGCACAATCTCTGGTTCTCATTACGGTGATATTTTGTAGGACAAGGTGTGAATCTTGGTTGGAGCGATGTACAAATTCTGGACAAAATACTTGGAGATGCAGTACGAGAAGGAGCAGATATCGGAAGCATCACATATCTTCGAGAATACGATTCAGCTGCACAGAAGCATAATCTGCCCGTTATGGTTTCTGTCGATCTRCTAAATCGAATCTACCGTACCGATGCGCCCGCGATTGTTGCTGCTCGAGCGTTTGGCCTGAACGCATTTAATTCTCTGGGACCTGTCAAAAACTTTCTCATGAATTATTTATCAGCACATCGGTGAACAATTTCCGGTTTATTGTTGGTCAGTATAAATTAGTTTTCTGTTTATGTTGATAGTTTTTGAATAAATGTAGTGTTTCTGTTAAAATCGACTTCAAAGTTTTCAATACGTGCACTTCATCGGACATGGTTCTGGAGTGTCATGATGGTTAGAATGTGAATTAGGAATTCTCTTTATCTAGAGCCTGTCATTAAGGTTAGAACTTGCGTGTCATTAAGGTTAGAACTTGAAAAAAATGCACTCTGTTTCAGAATTTCATGTGGGACTTCATACTGATTCTACGAATTATTGAACTCAATATGGTCCTAATTTTCCCTTCTTTTGTGAAGAAAAATAAATGGCTTCTGAATTAGGCAGAATCCAGGGCCTTATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGAGCGATGTACAAATTC</pcr_primer_p1>
		<pcr_primer_p2>ATTCATGAGAAAGTTTTTGACAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTGGAGCGATGTACAAATTCTGGACAAAATACTTGGAGATGCAGTACGAGAAGGAGCAGATATCGGAAGCATCACATATCTTCGAGAATACGATTCAGCTGCACAGAAGCATAATCTGCCCGTTATGGTTTCTGTCGATCTGCTAAATCGAATCTACCGTACCGATGCGCCCGCGATTGTTGCTGCTCGAGCGTTTGGCCTGAACGCATTTAATTCTCTGGGACCTGTCAAAAACTTTCTCATGAAT</canonical_amplicon>
		<polymorphic_amplicon>TTGGAGCGATGTACAAATTCTGGACAAAATACTTGGAGATGCAGTACGAGAAGGAGCAGATATCGGAAGCATCACATATCTTCGAGAATACGATTCAGCTGCACAGAAGCATAATCTGCCCGTTATGGTTTCTGTCGATCTRCTAAATCGAATCTACCGTACCGATGCGCCCGCGATTGTTGCTGCTCGAGCGTTTGGCCTGAACGCATTTAATTCTCTGGGACCTGTCAAAAACTTTCTCATGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22500</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>208156</contig_pos>
        <strand>+</strand>
        <context>TTGGCCTGAA[C/T]GCATTYAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACCGTACCGATGCGCCCGCGATTGTTGCTGCTCGAGCGTTTGGCCTGAA</left_flank>
        <right_flank>GCATTTAATTCTCTGGGACCTGTCAAAAACTTTCTCATGAATTATTTATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAAAATGAATCCATTCCGAACAGAAACATTTGGACGCAAAGCAGAAGGAACTACACCTCCACACATCATTTCAGTTCAAGACAAAAGTCGAGCATCGTTTCCTCTTGGCTTTGGAAATGCACATAGGTATTTAAGAGAGAAATTCAATTACAGTAATTCATTCAATTCAGCTATATCACCACACGATGCGCGTTGATTGGGGATGCTGCTCATAGAATGCATCCACTTGCAGGTTAGCACAATCTCTGGTTCTCATTACGGTGATATTTTGTAGGACAAGGTGTGAATCTTGGTTGGAGCGATGTACAAATTCTGGACAAAATACTTGGAGATGCAGTACGAGAAGGAGCAGATATCGGAAGCATCACATATCTTCGAGAATACGATTCAGCTGCACAGAAGCATAATCTGCCCGTTATGGTTTCTGTCGATCTGCTAAATCGAATCTACCGTACCGATGCGCCCGCGATTGTTGCTGCTCGAGCGTTTGGCCTGAACGCATTTAATTCTCTGGGACCTGTCAAAAACTTTCTCATGAATTATTTATCAGCACATCGGTGAACAATTTCCGGTTTATTGTTGGTCAGTATAAATTAGTTTTCTGTTTATGTTGATAGTTTTTGAATAAATGTAGTGTTTCTGTTAAAATCGACTTCAAAGTTTTCAATACGTGCACTTCATCGGACATGGTTCTGGAGTGTCATGATGGTTAGAATGTGAATTAGGAATTCTCTTTATCTAGAGCCTGTCATTAAGGTTAGAACTTGCGTGTCATTAAGGTTAGAACTTGAAAAAAATGCACTCTGTTTCAGAATTTCATGTGGGACTTCATACTGATTCTACGAATTATTGAACTCAATATGGTCCTAATTTTCCCTTCTTTTGTGAAGAAAAATAAATGGCTTCTGAATTAGGCAGAATCCAGGGCCTTATTATTAAGTTGGCCCTGAATAACTTTCTTGACTTGTCTAGCTTGAAGTTTTAGGGGTTGATAGGAC</canonical>
            <polymorphic>AACAAAATGAATCCATTCCGAACAGAAACATTTGGACGCAAAGCAGAAGGAACTACACCTCCACACATCATTTCAGTTCAAGACAAAAGTCGAGCATCGTTTCCTCTTGGCTTTGGAAATGCACATAGGTATTTAAGAGAGAAATTCAATTACAGTAATTCATTCAATTCAGCTATATCACCACACGATGCGCGTTGATTGGGGATGCTGCTCATAGAATGCATCCACTTGCAGGTTAGCACAATCTCTGGTTCTCATTACGGTGATATTTTGTAGGACAAGGTGTGAATCTTGGTTGGAGCGATGTACAAATTCTGGACAAAATACTTGGAGATGCAGTACGAGAAGGAGCAGATATCGGAAGCATCACATATCTTCGAGAATACGATTCAGCTGCACAGAAGCATAATCTGCCCGTTATGGTTTCTGTCGATCTGCTAAATCGAATCTACCGTACCGATGCGCCCGCGATTGTTGCTGCTCGAGCGTTTGGCCTGAAYGCATTTAATTCTCTGGGACCTGTCAAAAACTTTCTCATGAATTATTTATCAGCACATCGGTGAACAATTTCCGGTTTATTGTTGGTCAGTATAAATTAGTTTTCTGTTTATGTTGATAGTTTTTGAATAAATGTAGTGTTTCTGTTAAAATCGACTTCAAAGTTTTCAATACGTGCACTTCATCGGACATGGTTCTGGAGTGTCATGATGGTTAGAATGTGAATTAGGAATTCTCTTTATCTAGAGCCTGTCATTAAGGTTAGAACTTGCGTGTCATTAAGGTTAGAACTTGAAAAAAATGCACTCTGTTTCAGAATTTCATGTGGGACTTCATACTGATTCTACGAATTATTGAACTCAATATGGTCCTAATTTTCCCTTCTTTTGTGAAGAAAAATAAATGGCTTCTGAATTAGGCAGAATCCAGGGCCTTATTATTAAGTTGGCCCTGAATAACTTTCTTGACTTGTCTAGCTTGAAGTTTTAGGGGTTGATAGGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAAATACTTGGAGATGCAGT</pcr_primer_p1>
		<pcr_primer_p2>CACCGATGTGCTGATAAATAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACAAAATACTTGGAGATGCAGTACGAGAAGGAGCAGATATCGGAAGCATCACATATCTTCGAGAATACGATTCAGCTGCACAGAAGCATAATCTGCCCGTTATGGTTTCTGTCGATCTGCTAAATCGAATCTACCGTACCGATGCGCCCGCGATTGTTGCTGCTCGAGCGTTTGGCCTGAACGCATTTAATTCTCTGGGACCTGTCAAAAACTTTCTCATGAATTATTTATCAGCACATCGGTG</canonical_amplicon>
		<polymorphic_amplicon>ACAAAATACTTGGAGATGCAGTACGAGAAGGAGCAGATATCGGAAGCATCACATATCTTCGAGAATACGATTCAGCTGCACAGAAGCATAATCTGCCCGTTATGGTTTCTGTCGATCTGCTAAATCGAATCTACCGTACCGATGCGCCCGCGATTGTTGCTGCTCGAGCGTTTGGCCTGAAYGCATTTAATTCTCTGGGACCTGTCAAAAACTTTCTCATGAATTATTTATCAGCACATCGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22501</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>208162</contig_pos>
        <strand>+</strand>
        <context>TGAAYGCATT[C/T]AATTCTCTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCGATGCGCCCGCGATTGTTGCTGCTCGAGCGTTTGGCCTGAACGCATT</left_flank>
        <right_flank>AATTCTCTGGGACCTGTCAAAAACTTTCTCATGAATTATTTATCAGCACA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAATCCATTCCGAACAGAAACATTTGGACGCAAAGCAGAAGGAACTACACCTCCACACATCATTTCAGTTCAAGACAAAAGTCGAGCATCGTTTCCTCTTGGCTTTGGAAATGCACATAGGTATTTAAGAGAGAAATTCAATTACAGTAATTCATTCAATTCAGCTATATCACCACACGATGCGCGTTGATTGGGGATGCTGCTCATAGAATGCATCCACTTGCAGGTTAGCACAATCTCTGGTTCTCATTACGGTGATATTTTGTAGGACAAGGTGTGAATCTTGGTTGGAGCGATGTACAAATTCTGGACAAAATACTTGGAGATGCAGTACGAGAAGGAGCAGATATCGGAAGCATCACATATCTTCGAGAATACGATTCAGCTGCACAGAAGCATAATCTGCCCGTTATGGTTTCTGTCGATCTGCTAAATCGAATCTACCGTACCGATGCGCCCGCGATTGTTGCTGCTCGAGCGTTTGGCCTGAACGCATTTAATTCTCTGGGACCTGTCAAAAACTTTCTCATGAATTATTTATCAGCACATCGGTGAACAATTTCCGGTTTATTGTTGGTCAGTATAAATTAGTTTTCTGTTTATGTTGATAGTTTTTGAATAAATGTAGTGTTTCTGTTAAAATCGACTTCAAAGTTTTCAATACGTGCACTTCATCGGACATGGTTCTGGAGTGTCATGATGGTTAGAATGTGAATTAGGAATTCTCTTTATCTAGAGCCTGTCATTAAGGTTAGAACTTGCGTGTCATTAAGGTTAGAACTTGAAAAAAATGCACTCTGTTTCAGAATTTCATGTGGGACTTCATACTGATTCTACGAATTATTGAACTCAATATGGTCCTAATTTTCCCTTCTTTTGTGAAGAAAAATAAATGGCTTCTGAATTAGGCAGAATCCAGGGCCTTATTATTAAGTTGGCCCTGAATAACTTTCTTGACTTGTCTAGCTTGAAGTTTTAGGGGTTGATAGGACTTCTGA</canonical>
            <polymorphic>ATGAATCCATTCCGAACAGAAACATTTGGACGCAAAGCAGAAGGAACTACACCTCCACACATCATTTCAGTTCAAGACAAAAGTCGAGCATCGTTTCCTCTTGGCTTTGGAAATGCACATAGGTATTTAAGAGAGAAATTCAATTACAGTAATTCATTCAATTCAGCTATATCACCACACGATGCGCGTTGATTGGGGATGCTGCTCATAGAATGCATCCACTTGCAGGTTAGCACAATCTCTGGTTCTCATTACGGTGATATTTTGTAGGACAAGGTGTGAATCTTGGTTGGAGCGATGTACAAATTCTGGACAAAATACTTGGAGATGCAGTACGAGAAGGAGCAGATATCGGAAGCATCACATATCTTCGAGAATACGATTCAGCTGCACAGAAGCATAATCTGCCCGTTATGGTTTCTGTCGATCTGCTAAATCGAATCTACCGTACCGATGCGCCCGCGATTGTTGCTGCTCGAGCGTTTGGCCTGAACGCATTYAATTCTCTGGGACCTGTCAAAAACTTTCTCATGAATTATTTATCAGCACATCGGTGAACAATTTCCGGTTTATTGTTGGTCAGTATAAATTAGTTTTCTGTTTATGTTGATAGTTTTTGAATAAATGTAGTGTTTCTGTTAAAATCGACTTCAAAGTTTTCAATACGTGCACTTCATCGGACATGGTTCTGGAGTGTCATGATGGTTAGAATGTGAATTAGGAATTCTCTTTATCTAGAGCCTGTCATTAAGGTTAGAACTTGCGTGTCATTAAGGTTAGAACTTGAAAAAAATGCACTCTGTTTCAGAATTTCATGTGGGACTTCATACTGATTCTACGAATTATTGAACTCAATATGGTCCTAATTTTCCCTTCTTTTGTGAAGAAAAATAAATGGCTTCTGAATTAGGCAGAATCCAGGGCCTTATTATTAAGTTGGCCCTGAATAACTTTCTTGACTTGTCTAGCTTGAAGTTTTAGGGGTTGATAGGACTTCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>372 161 140 127 109 68 23</canonical_bands>
                <polymorphic_bands>512 161 127 109 68 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAAATACTTGGAGATGCAGT</pcr_primer_p1>
		<pcr_primer_p2>CACCGATGTGCTGATAAATAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACAAAATACTTGGAGATGCAGTACGAGAAGGAGCAGATATCGGAAGCATCACATATCTTCGAGAATACGATTCAGCTGCACAGAAGCATAATCTGCCCGTTATGGTTTCTGTCGATCTGCTAAATCGAATCTACCGTACCGATGCGCCCGCGATTGTTGCTGCTCGAGCGTTTGGCCTGAACGCATTTAATTCTCTGGGACCTGTCAAAAACTTTCTCATGAATTATTTATCAGCACATCGGTG</canonical_amplicon>
		<polymorphic_amplicon>ACAAAATACTTGGAGATGCAGTACGAGAAGGAGCAGATATCGGAAGCATCACATATCTTCGAGAATACGATTCAGCTGCACAGAAGCATAATCTGCCCGTTATGGTTTCTGTCGATCTGCTAAATCGAATCTACCGTACCGATGCGCCCGCGATTGTTGCTGCTCGAGCGTTTGGCCTGAACGCATTYAATTCTCTGGGACCTGTCAAAAACTTTCTCATGAATTATTTATCAGCACATCGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22502</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>208312</contig_pos>
        <strand>+</strand>
        <context>TAAAATCGAC[A/T]TCAAAGTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTTATGTTGATAGTTTTTGAATAAATGTAGTGTTTCTGTTAAAATCGAC</left_flank>
        <right_flank>TCAAAGTTTTCAATACGTGCACTTCATCGGACATGGTTCTGGAGTGTCAT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCATTCAATTCAGCTATATCACCACACGATGCGCGTTGATTGGGGATGCTGCTCATAGAATGCATCCACTTGCAGGTTAGCACAATCTCTGGTTCTCATTACGGTGATATTTTGTAGGACAAGGTGTGAATCTTGGTTGGAGCGATGTACAAATTCTGGACAAAATACTTGGAGATGCAGTACGAGAAGGAGCAGATATCGGAAGCATCACATATCTTCGAGAATACGATTCAGCTGCACAGAAGCATAATCTGCCCGTTATGGTTTCTGTCGATCTGCTAAATCGAATCTACCGTACCGATGCGCCCGCGATTGTTGCTGCTCGAGCGTTTGGCCTGAACGCATTTAATTCTCTGGGACCTGTCAAAAACTTTCTCATGAATTATTTATCAGCACATCGGTGAACAATTTCCGGTTTATTGTTGGTCAGTATAAATTAGTTTTCTGTTTATGTTGATAGTTTTTGAATAAATGTAGTGTTTCTGTTAAAATCGACTTCAAAGTTTTCAATACGTGCACTTCATCGGACATGGTTCTGGAGTGTCATGATGGTTAGAATGTGAATTAGGAATTCTCTTTATCTAGAGCCTGTCATTAAGGTTAGAACTTGCGTGTCATTAAGGTTAGAACTTGAAAAAAATGCACTCTGTTTCAGAATTTCATGTGGGACTTCATACTGATTCTACGAATTATTGAACTCAATATGGTCCTAATTTTCCCTTCTTTTGTGAAGAAAAATAAATGGCTTCTGAATTAGGCAGAATCCAGGGCCTTATTATTAAGTTGGCCCTGAATAACTTTCTTGACTTGTCTAGCTTGAAGTTTTAGGGGTTGATAGGACTTCTGAAAAAAATGCAGTGTATATTTGGCATTAGTAAGCCACTCTTTATTTATGTTCGTACGTTTTCCACTGATTTTTTTTTCTAATTTTTGGAATCTTCAAGAATAAGAACTAACTCGATGACTTAGAACACAGTTTAGAATTGCCAAAAACAGT</canonical>
            <polymorphic>AATTCATTCAATTCAGCTATATCACCACACGATGCGCGTTGATTGGGGATGCTGCTCATAGAATGCATCCACTTGCAGGTTAGCACAATCTCTGGTTCTCATTACGGTGATATTTTGTAGGACAAGGTGTGAATCTTGGTTGGAGCGATGTACAAATTCTGGACAAAATACTTGGAGATGCAGTACGAGAAGGAGCAGATATCGGAAGCATCACATATCTTCGAGAATACGATTCAGCTGCACAGAAGCATAATCTGCCCGTTATGGTTTCTGTCGATCTGCTAAATCGAATCTACCGTACCGATGCGCCCGCGATTGTTGCTGCTCGAGCGTTTGGCCTGAACGCATTTAATTCTCTGGGACCTGTCAAAAACTTTCTCATGAATTATTTATCAGCACATCGGTGAACAATTTCCGGTTTATTGTTGGTCAGTATAAATTAGTTTTCTGTTTATGTTGATAGTTTTTGAATAAATGTAGTGTTTCTGTTAAAATCGACWTCAAAGTTTTCAATACGTGCACTTCATCGGACATGGTTCTGGAGTGTCATGATGGTTAGAATGTGAATTAGGAATTCTCTTTATCTAGAGCCTGTCATTAAGGTTAGAACTTGCGTGTCATTAAGGTTAGAACTTGAAAAAAATGCACTCTGTTTCAGAATTTCATGTGGGACTTCATACTGATTCTACGAATTATTGAACTCAATATGGTCCTAATTTTCCCTTCTTTTGTGAAGAAAAATAAATGGCTTCTGAATTAGGCAGAATCCAGGGCCTTATTATTAAGTTGGCCCTGAATAACTTTCTTGACTTGTCTAGCTTGAAGTTTTAGGGGTTGATAGGACTTCTGAAAAAAATGCAGTGTATATTTGGCATTAGTAAGCCACTCTTTATTTATGTTCGTACGTTTTCCACTGATTTTTTTTTCTAATTTTTGGAATCTTCAAGAATAAGAACTAACTCGATGACTTAGAACACAGTTTAGAATTGCCAAAAACAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTCAAAAACTTTCTCATGAAT</pcr_primer_p1>
		<pcr_primer_p2>TCTAACCTTAATGACAGGCTCTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTGTCAAAAACTTTCTCATGAATTATTTATCAGCACATCGGTGAACAATTTCCGGTTTATTGTTGGTCAGTATAAATTAGTTTTCTGTTTATGTTGATAGTTTTTGAATAAATGTAGTGTTTCTGTTAAAATCGACTTCAAAGTTTTCAATACGTGCACTTCATCGGACATGGTTCTGGAGTGTCATGATGGTTAGAATGTGAATTAGGAATTCTCTTTATCTAGAGCCTGTCATTAAGGTTAGA</canonical_amplicon>
		<polymorphic_amplicon>CTGTCAAAAACTTTCTCATGAATTATTTATCAGCACATCGGTGAACAATTTCCGGTTTATTGTTGGTCAGTATAAATTAGTTTTCTGTTTATGTTGATAGTTTTTGAATAAATGTAGTGTTTCTGTTAAAATCGACWTCAAAGTTTTCAATACGTGCACTTCATCGGACATGGTTCTGGAGTGTCATGATGGTTAGAATGTGAATTAGGAATTCTCTTTATCTAGAGCCTGTCATTAAGGTTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22503</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>212099</contig_pos>
        <strand>+</strand>
        <context>ATGCCGAACA[C/T]CCTTGTTGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCTAGTGTCCCATTGTCCTTCTCACATTCCGAATCCAAATGCCGAACA</left_flank>
        <right_flank>CCTTGTTGTTGTTATCCTCCTCGATCTCCTAGCTATAAACCAGTTGATGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGACTCCTCACAAACGAATGCAGCATGCTCGCAGTCATCGATAATTGATCAAATCCACCTAAATTCTTACCTTCCCACTGGTTTCCTTTATTTGACTCCGAATATGCCGATTTGGTGCCCAATTGTTCTTTCCAGATTCCAAAGTATGCAATCACCAATTACCAATCTAGAATACCCAATCCCGATCATCTGTTGTTGCGGTCCTCGATCTCCTATCTAATAATCACGAAATCTTTGTCGTTGTCCCAATCCGAGCCATCCGAATCCGTGGTCCTAATCACCTTCCAATCCAATCCCGAGCCATTCCAATCCCAACTATTGCCGTTTTTCTCGTCATCCATGGCTCTTCACAAACGAACGCGACATTGTCCCAGTCGTCGGTAATTGATCAAGTCCACCTAAAACCTTACCTTCAAATTGGTTCCCTTCCGTTGACTCCGACTCTGCCAATCTAGTGTCCCATTGTCCTTCTCACATTCCGAATCCAAATGCCGAACATCCTTGTTGTTGTTATCCTCCTCGATCTCCTAGCTATAAACCAGTTGATGTCCAAACACCACCTTCATCGTTGTCCCAACTCGAGCTATCAAAATTCCAGTAGCCCTCATCATCTTCCAATTCAATCTAGAGCCAGTCCAATCCCGATTGTCGCCGACCTTTTCACCATCCATGGCTCTTCGAACGCAGCATTATTTCAGTCATCGAAACTTGATCAAAGCCACCTAAAATCTTACCTTCTCATTAGGTTCCTTCATCTGACTATGCCGATTTGGTGTTCTATTGCTCCTCTCGTTTCCACAACCCAAAACATCCGATCTCCAATCATCAATATCCAAATCCGAGCATCACTGTTGTCCTCCTCGATGTCCTAACTACGCACCAGCCGATGTCCGTCCACTATCTCCACCATTGTCACAGTCCGAAATTCCGATTAATCCTCATCCTCTCCCAATCCAATCCACTCCCGAATCATTCCAATCCCAATTTCCATCGTTCTTC</canonical>
            <polymorphic>ATGACTCCTCACAAACGAATGCAGCATGCTCGCAGTCATCGATAATTGATCAAATCCACCTAAATTCTTACCTTCCCACTGGTTTCCTTTATTTGACTCCGAATATGCCGATTTGGTGCCCAATTGTTCTTTCCAGATTCCAAAGTATGCAATCACCAATTACCAATCTAGAATACCCAATCCCGATCATCTGTTGTTGCGGTCCTCGATCTCCTATCTAATAATCACGAAATCTTTGTCGTTGTCCCAATCCGAGCCATCCGAATCCGTGGTCCTAATCACCTTCCAATCCAATCCCGAGCCATTCCAATCCCAACTATTGCCGTTTTTCTCGTCATCCATGGCTCTTCACAAACGAACGCGACATTGTCCCAGTCGTCGGTAATTGATCAAGTCCACCTAAAACCTTACCTTCAAATTGGTTCCCTTCCGTTGACTCCGACTCTGCCAATCTAGTGTCCCATTGTCCTTCTCACATTCCGAATCCAAATGCCGAACAYCCTTGTTGTTGTTATCCTCCTCGATCTCCTAGCTATAAACCAGTTGATGTCCAAACACCACCTTCATCGTTGTCCCAACTCGAGCTATCAAAATTCCAGTAGCCCTCATCATCTTCCAATTCAATCTAGAGCCAGTCCAATCCCGATTGTCGCCGACCTTTTCACCATCCATGGCTCTTCGAACGCAGCATTATTTCAGTCATCGAAACTTGATCAAAGCCACCTAAAATCTTACCTTCTCATTAGGTTCCTTCATCTGACTATGCCGATTTGGTGTTCTATTGCTCCTCTCGTTTCCACAACCCAAAACATCCGATCTCCAATCATCAATATCCAAATCCGAGCATCACTGTTGTCCTCCTCGATGTCCTAACTACGCACCAGCCGATGTCCGTCCACTATCTCCACCATTGTCACAGTCCGAAATTCCGATTAATCCTCATCCTCTCCCAATCCAATCCACTCCCGAATCATTCCAATCCCAATTTCCATCGTTCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATTGATCAAGTCCACCTAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTCTAGATTGAATTGGAAGATGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAATTGATCAAGTCCACCTAAAACCTTACCTTCAAATTGGTTCCCTTCCGTTGACTCCGACTCTGCCAATCTAGTGTCCCATTGTCCTTCTCACATTCCGAATCCAAATGCCGAACATCCTTGTTGTTGTTATCCTCCTCGATCTCCTAGCTATAAACCAGTTGATGTCCAAACACCACCTTCATCGTTGTCCCAACTCGAGCTATCAAAATTCCAGTAGCCCTCATCATCTTCCAATTCAATCTAGAG</canonical_amplicon>
		<polymorphic_amplicon>TAATTGATCAAGTCCACCTAAAACCTTACCTTCAAATTGGTTCCCTTCCGTTGACTCCGACTCTGCCAATCTAGTGTCCCATTGTCCTTCTCACATTCCGAATCCAAATGCCGAACAYCCTTGTTGTTGTTATCCTCCTCGATCTCCTAGCTATAAACCAGTTGATGTCCAAACACCACCTTCATCGTTGTCCCAACTCGAGCTATCAAAATTCCAGTAGCCCTCATCATCTTCCAATTCAATCTAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22504</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>241739</contig_pos>
        <strand>+</strand>
        <context>CTTCCGTGCT[C/T]CATCTTTCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATGTCTTCCATGATAGCAACCATTTTTCTCATTACATCCTTCCGTGCT</left_flank>
        <right_flank>CATCTTTCTCTTCCTCTGATATTTTGGCATTATCAATGAATGAATAAATA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAAAATTTCCCGTTTTAGGTCACCAAGTGATCCAAGGCTTGAAAAATAACTAATTGGAAAAAAATGAGTAGTTACCGTAAACTCTGTAATTGAAGGACAAACTAAACGAATTTTGAGCTCAATTATCTCAATGTCTATGAGAGATATCAACAATGTATCAACTGATAAAATATTGGTGATATTATGAAAAGAATTTTATCAGTTGACAATTTTGTGATATCTTTGACAGGAAATGAGATAATAAAATGTAAGCTCAGGTTGGAGGTTTCCTAGTGGAGAATTAACGGGTTCTTTAAAGGGAGTTCTATTCTGAAATTGTGATGTATGGACGTTTCCTCGTAGCTAGTTCAAGCTAAATACTCAAAATCTTTAAAAATATTTATTCAACAAGATTATTCAATTTTCAAAAAATCAGAATAGTGTTCCAGATTGTAATCGTGAATATCGATAATGTCTTCCATGATAGCAACCATTTTTCTCATTACATCCTTCCGTGCTTCATCTTTCTCTTCCTCTGATATTTTGGCATTATCAATGAATGAATAAATATCCGGAATGAGCAACATAGCCATCATTGGAGCATACAAGTTGTAGCATTCTTGAAGCTGAAAAATTAAATAATTTTAGATTAATTGAATATTACACAAGAATCACCTCATGGAGCGAGAACAATTCTTCGCCATAAACACTGGTGAAGGTGTCGTAGTAGCACTTCAAAATCTCTGAACCTCGTTCACGACGGTCCTGAGAAAAATTTCGGTTTAAAAAATGCAAGTTTTATTTTTGAACTAACCGTTTCCGAAAGACATCCCAACAATAGTCTCGAGAGGTCCAATCCAGGAGGCAATCTAGAGACTGCTTGCCAGTCAATCATTGCTTCCAACTTCAGTTTTCCTTCCTTATTCGCACTGTAGATCACATTGGATTGCCATAAATCTCCATGATTCAAAACTAGCTTGAATCCCAAAGTCTTTGAAATATCAGTATATTTGGGAACCA</canonical>
            <polymorphic>CGAAAATTTCCCGTTTTAGGTCACCAAGTGATCCAAGGCTTGAAAAATAACTAATTGGAAAAAAATGAGTAGTTACCGTAAACTCTGTAATTGAAGGACAAACTAAACGAATTTTGAGCTCAATTATCTCAATGTCTATGAGAGATATCAACAATGTATCAACTGATAAAATATTGGTGATATTATGAAAAGAATTTTATCAGTTGACAATTTTGTGATATCTTTGACAGGAAATGAGATAATAAAATGTAAGCTCAGGTTGGAGGTTTCCTAGTGGAGAATTAACGGGTTCTTTAAAGGGAGTTCTATTCTGAAATTGTGATGTATGGACGTTTCCTCGTAGCTAGTTCAAGCTAAATACTCAAAATCTTTAAAAATATTTATTCAACAAGATTATTCAATTTTCAAAAAATCAGAATAGTGTTCCAGATTGTAATCGTGAATATCGATAATGTCTTCCATGATAGCAACCATTTTTCTCATTACATCCTTCCGTGCTYCATCTTTCTCTTCCTCTGATATTTTGGCATTATCAATGAATGAATAAATATCCGGAATGAGCAACATAGCCATCATTGGAGCATACAAGTTGTAGCATTCTTGAAGCTGAAAAATTAAATAATTTTAGATTAATTGAATATTACACAAGAATCACCTCATGGAGCGAGAACAATTCTTCGCCATAAACACTGGTGAAGGTGTCGTAGTAGCACTTCAAAATCTCTGAACCTCGTTCACGACGGTCCTGAGAAAAATTTCGGTTTAAAAAATGCAAGTTTTATTTTTGAACTAACCGTTTCCGAAAGACATCCCAACAATAGTCTCGAGAGGTCCAATCCAGGAGGCAATCTAGAGACTGCTTGCCAGTCAATCATTGCTTCCAACTTCAGTTTTCCTTCCTTATTCGCACTGTAGATCACATTGGATTGCCATAAATCTCCATGATTCAAAACTAGCTTGAATCCCAAAGTCTTTGAAATATCAGTATATTTGGGAACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCAGAATAGTGTTCCAGATTG</pcr_primer_p1>
		<pcr_primer_p2>CATGAGGTGATTCTTGTGTAATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATCAGAATAGTGTTCCAGATTGTAATCGTGAATATCGATAATGTCTTCCATGATAGCAACCATTTTTCTCATTACATCCTTCCGTGCTTCATCTTTCTCTTCCTCTGATATTTTGGCATTATCAATGAATGAATAAATATCCGGAATGAGCAACATAGCCATCATTGGAGCATACAAGTTGTAGCATTCTTGAAGCTGAAAAATTAAATAATTTTAGATTAATTGAATATTACACAAGAATCACCTCATG</canonical_amplicon>
		<polymorphic_amplicon>AATCAGAATAGTGTTCCAGATTGTAATCGTGAATATCGATAATGTCTTCCATGATAGCAACCATTTTTCTCATTACATCCTTCCGTGCTYCATCTTTCTCTTCCTCTGATATTTTGGCATTATCAATGAATGAATAAATATCCGGAATGAGCAACATAGCCATCATTGGAGCATACAAGTTGTAGCATTCTTGAAGCTGAAAAATTAAATAATTTTAGATTAATTGAATATTACACAAGAATCACCTCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22505</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>241753</contig_pos>
        <strand>+</strand>
        <context>CTTTCTCTTC[C/T]TCYGAWAKTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAGCAACCATTTTTCTCATTACATCCTTCCGTGCTTCATCTTTCTCTTC</left_flank>
        <right_flank>TCTGATATTTTGGCATTATCAATGAATGAATAAATATCCGGAATGAGCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAGGTCACCAAGTGATCCAAGGCTTGAAAAATAACTAATTGGAAAAAAATGAGTAGTTACCGTAAACTCTGTAATTGAAGGACAAACTAAACGAATTTTGAGCTCAATTATCTCAATGTCTATGAGAGATATCAACAATGTATCAACTGATAAAATATTGGTGATATTATGAAAAGAATTTTATCAGTTGACAATTTTGTGATATCTTTGACAGGAAATGAGATAATAAAATGTAAGCTCAGGTTGGAGGTTTCCTAGTGGAGAATTAACGGGTTCTTTAAAGGGAGTTCTATTCTGAAATTGTGATGTATGGACGTTTCCTCGTAGCTAGTTCAAGCTAAATACTCAAAATCTTTAAAAATATTTATTCAACAAGATTATTCAATTTTCAAAAAATCAGAATAGTGTTCCAGATTGTAATCGTGAATATCGATAATGTCTTCCATGATAGCAACCATTTTTCTCATTACATCCTTCCGTGCTTCATCTTTCTCTTCCTCTGATATTTTGGCATTATCAATGAATGAATAAATATCCGGAATGAGCAACATAGCCATCATTGGAGCATACAAGTTGTAGCATTCTTGAAGCTGAAAAATTAAATAATTTTAGATTAATTGAATATTACACAAGAATCACCTCATGGAGCGAGAACAATTCTTCGCCATAAACACTGGTGAAGGTGTCGTAGTAGCACTTCAAAATCTCTGAACCTCGTTCACGACGGTCCTGAGAAAAATTTCGGTTTAAAAAATGCAAGTTTTATTTTTGAACTAACCGTTTCCGAAAGACATCCCAACAATAGTCTCGAGAGGTCCAATCCAGGAGGCAATCTAGAGACTGCTTGCCAGTCAATCATTGCTTCCAACTTCAGTTTTCCTTCCTTATTCGCACTGTAGATCACATTGGATTGCCATAAATCTCCATGATTCAAAACTAGCTTGAATCCCAAAGTCTTTGAAATATCAGTATATTTGGGAACCACTGCCTTGTAGTGT</canonical>
            <polymorphic>TTTAGGTCACCAAGTGATCCAAGGCTTGAAAAATAACTAATTGGAAAAAAATGAGTAGTTACCGTAAACTCTGTAATTGAAGGACAAACTAAACGAATTTTGAGCTCAATTATCTCAATGTCTATGAGAGATATCAACAATGTATCAACTGATAAAATATTGGTGATATTATGAAAAGAATTTTATCAGTTGACAATTTTGTGATATCTTTGACAGGAAATGAGATAATAAAATGTAAGCTCAGGTTGGAGGTTTCCTAGTGGAGAATTAACGGGTTCTTTAAAGGGAGTTCTATTCTGAAATTGTGATGTATGGACGTTTCCTCGTAGCTAGTTCAAGCTAAATACTCAAAATCTTTAAAAATATTTATTCAACAAGATTATTCAATTTTCAAAAAATCAGAATAGTGTTCCAGATTGTAATCGTGAATATCGATAATGTCTTCCATGATAGCAACCATTTTTCTCATTACATCCTTCCGTGCTTCATCTTTCTCTTCYTCTGATATTTTGGCATTATCAATGAATGAATAAATATCCGGAATGAGCAACATAGCCATCATTGGAGCATACAAGTTGTAGCATTCTTGAAGCTGAAAAATTAAATAATTTTAGATTAATTGAATATTACACAAGAATCACCTCATGGAGCGAGAACAATTCTTCGCCATAAACACTGGTGAAGGTGTCGTAGTAGCACTTCAAAATCTCTGAACCTCGTTCACGACGGTCCTGAGAAAAATTTCGGTTTAAAAAATGCAAGTTTTATTTTTGAACTAACCGTTTCCGAAAGACATCCCAACAATAGTCTCGAGAGGTCCAATCCAGGAGGCAATCTAGAGACTGCTTGCCAGTCAATCATTGCTTCCAACTTCAGTTTTCCTTCCTTATTCGCACTGTAGATCACATTGGATTGCCATAAATCTCCATGATTCAAAACTAGCTTGAATCCCAAAGTCTTTGAAATATCAGTATATTTGGGAACCACTGCCTTGTAGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCAGAATAGTGTTCCAGATTG</pcr_primer_p1>
		<pcr_primer_p2>CATGAGGTGATTCTTGTGTAATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATCAGAATAGTGTTCCAGATTGTAATCGTGAATATCGATAATGTCTTCCATGATAGCAACCATTTTTCTCATTACATCCTTCCGTGCTTCATCTTTCTCTTCCTCTGATATTTTGGCATTATCAATGAATGAATAAATATCCGGAATGAGCAACATAGCCATCATTGGAGCATACAAGTTGTAGCATTCTTGAAGCTGAAAAATTAAATAATTTTAGATTAATTGAATATTACACAAGAATCACCTCATG</canonical_amplicon>
		<polymorphic_amplicon>AATCAGAATAGTGTTCCAGATTGTAATCGTGAATATCGATAATGTCTTCCATGATAGCAACCATTTTTCTCATTACATCCTTCCGTGCTTCATCTTTCTCTTCYTCTGATATTTTGGCATTATCAATGAATGAATAAATATCCGGAATGAGCAACATAGCCATCATTGGAGCATACAAGTTGTAGCATTCTTGAAGCTGAAAAATTAAATAATTTTAGATTAATTGAATATTACACAAGAATCACCTCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22506</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>241756</contig_pos>
        <strand>+</strand>
        <context>TCTCTTCYTC[C/T]GAWAKTTTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCAACCATTTTTCTCATTACATCCTTCCGTGCTTCATCTTTCTCTTCCTC</left_flank>
        <right_flank>GATATTTTGGCATTATCAATGAATGAATAAATATCCGGAATGAGCAACAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTCACCAAGTGATCCAAGGCTTGAAAAATAACTAATTGGAAAAAAATGAGTAGTTACCGTAAACTCTGTAATTGAAGGACAAACTAAACGAATTTTGAGCTCAATTATCTCAATGTCTATGAGAGATATCAACAATGTATCAACTGATAAAATATTGGTGATATTATGAAAAGAATTTTATCAGTTGACAATTTTGTGATATCTTTGACAGGAAATGAGATAATAAAATGTAAGCTCAGGTTGGAGGTTTCCTAGTGGAGAATTAACGGGTTCTTTAAAGGGAGTTCTATTCTGAAATTGTGATGTATGGACGTTTCCTCGTAGCTAGTTCAAGCTAAATACTCAAAATCTTTAAAAATATTTATTCAACAAGATTATTCAATTTTCAAAAAATCAGAATAGTGTTCCAGATTGTAATCGTGAATATCGATAATGTCTTCCATGATAGCAACCATTTTTCTCATTACATCCTTCCGTGCTTCATCTTTCTCTTCCTCTGATATTTTGGCATTATCAATGAATGAATAAATATCCGGAATGAGCAACATAGCCATCATTGGAGCATACAAGTTGTAGCATTCTTGAAGCTGAAAAATTAAATAATTTTAGATTAATTGAATATTACACAAGAATCACCTCATGGAGCGAGAACAATTCTTCGCCATAAACACTGGTGAAGGTGTCGTAGTAGCACTTCAAAATCTCTGAACCTCGTTCACGACGGTCCTGAGAAAAATTTCGGTTTAAAAAATGCAAGTTTTATTTTTGAACTAACCGTTTCCGAAAGACATCCCAACAATAGTCTCGAGAGGTCCAATCCAGGAGGCAATCTAGAGACTGCTTGCCAGTCAATCATTGCTTCCAACTTCAGTTTTCCTTCCTTATTCGCACTGTAGATCACATTGGATTGCCATAAATCTCCATGATTCAAAACTAGCTTGAATCCCAAAGTCTTTGAAATATCAGTATATTTGGGAACCACTGCCTTGTAGTGTTCA</canonical>
            <polymorphic>AGGTCACCAAGTGATCCAAGGCTTGAAAAATAACTAATTGGAAAAAAATGAGTAGTTACCGTAAACTCTGTAATTGAAGGACAAACTAAACGAATTTTGAGCTCAATTATCTCAATGTCTATGAGAGATATCAACAATGTATCAACTGATAAAATATTGGTGATATTATGAAAAGAATTTTATCAGTTGACAATTTTGTGATATCTTTGACAGGAAATGAGATAATAAAATGTAAGCTCAGGTTGGAGGTTTCCTAGTGGAGAATTAACGGGTTCTTTAAAGGGAGTTCTATTCTGAAATTGTGATGTATGGACGTTTCCTCGTAGCTAGTTCAAGCTAAATACTCAAAATCTTTAAAAATATTTATTCAACAAGATTATTCAATTTTCAAAAAATCAGAATAGTGTTCCAGATTGTAATCGTGAATATCGATAATGTCTTCCATGATAGCAACCATTTTTCTCATTACATCCTTCCGTGCTTCATCTTTCTCTTCCTCYGATATTTTGGCATTATCAATGAATGAATAAATATCCGGAATGAGCAACATAGCCATCATTGGAGCATACAAGTTGTAGCATTCTTGAAGCTGAAAAATTAAATAATTTTAGATTAATTGAATATTACACAAGAATCACCTCATGGAGCGAGAACAATTCTTCGCCATAAACACTGGTGAAGGTGTCGTAGTAGCACTTCAAAATCTCTGAACCTCGTTCACGACGGTCCTGAGAAAAATTTCGGTTTAAAAAATGCAAGTTTTATTTTTGAACTAACCGTTTCCGAAAGACATCCCAACAATAGTCTCGAGAGGTCCAATCCAGGAGGCAATCTAGAGACTGCTTGCCAGTCAATCATTGCTTCCAACTTCAGTTTTCCTTCCTTATTCGCACTGTAGATCACATTGGATTGCCATAAATCTCCATGATTCAAAACTAGCTTGAATCCCAAAGTCTTTGAAATATCAGTATATTTGGGAACCACTGCCTTGTAGTGTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCAGAATAGTGTTCCAGATTG</pcr_primer_p1>
		<pcr_primer_p2>CATGAGGTGATTCTTGTGTAATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATCAGAATAGTGTTCCAGATTGTAATCGTGAATATCGATAATGTCTTCCATGATAGCAACCATTTTTCTCATTACATCCTTCCGTGCTTCATCTTTCTCTTCCTCTGATATTTTGGCATTATCAATGAATGAATAAATATCCGGAATGAGCAACATAGCCATCATTGGAGCATACAAGTTGTAGCATTCTTGAAGCTGAAAAATTAAATAATTTTAGATTAATTGAATATTACACAAGAATCACCTCATG</canonical_amplicon>
		<polymorphic_amplicon>AATCAGAATAGTGTTCCAGATTGTAATCGTGAATATCGATAATGTCTTCCATGATAGCAACCATTTTTCTCATTACATCCTTCCGTGCTTCATCTTTCTCTTCCTCYGATATTTTGGCATTATCAATGAATGAATAAATATCCGGAATGAGCAACATAGCCATCATTGGAGCATACAAGTTGTAGCATTCTTGAAGCTGAAAAATTAAATAATTTTAGATTAATTGAATATTACACAAGAATCACCTCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22507</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>241759</contig_pos>
        <strand>+</strand>
        <context>CTTCYTCYGA[A/T]AKTTTGGCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCATTTTTCTCATTACATCCTTCCGTGCTTCATCTTTCTCTTCCTCTGA</left_flank>
        <right_flank>ATTTTGGCATTATCAATGAATGAATAAATATCCGGAATGAGCAACATAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACCAAGTGATCCAAGGCTTGAAAAATAACTAATTGGAAAAAAATGAGTAGTTACCGTAAACTCTGTAATTGAAGGACAAACTAAACGAATTTTGAGCTCAATTATCTCAATGTCTATGAGAGATATCAACAATGTATCAACTGATAAAATATTGGTGATATTATGAAAAGAATTTTATCAGTTGACAATTTTGTGATATCTTTGACAGGAAATGAGATAATAAAATGTAAGCTCAGGTTGGAGGTTTCCTAGTGGAGAATTAACGGGTTCTTTAAAGGGAGTTCTATTCTGAAATTGTGATGTATGGACGTTTCCTCGTAGCTAGTTCAAGCTAAATACTCAAAATCTTTAAAAATATTTATTCAACAAGATTATTCAATTTTCAAAAAATCAGAATAGTGTTCCAGATTGTAATCGTGAATATCGATAATGTCTTCCATGATAGCAACCATTTTTCTCATTACATCCTTCCGTGCTTCATCTTTCTCTTCCTCTGATATTTTGGCATTATCAATGAATGAATAAATATCCGGAATGAGCAACATAGCCATCATTGGAGCATACAAGTTGTAGCATTCTTGAAGCTGAAAAATTAAATAATTTTAGATTAATTGAATATTACACAAGAATCACCTCATGGAGCGAGAACAATTCTTCGCCATAAACACTGGTGAAGGTGTCGTAGTAGCACTTCAAAATCTCTGAACCTCGTTCACGACGGTCCTGAGAAAAATTTCGGTTTAAAAAATGCAAGTTTTATTTTTGAACTAACCGTTTCCGAAAGACATCCCAACAATAGTCTCGAGAGGTCCAATCCAGGAGGCAATCTAGAGACTGCTTGCCAGTCAATCATTGCTTCCAACTTCAGTTTTCCTTCCTTATTCGCACTGTAGATCACATTGGATTGCCATAAATCTCCATGATTCAAAACTAGCTTGAATCCCAAAGTCTTTGAAATATCAGTATATTTGGGAACCACTGCCTTGTAGTGTTCAAAC</canonical>
            <polymorphic>TCACCAAGTGATCCAAGGCTTGAAAAATAACTAATTGGAAAAAAATGAGTAGTTACCGTAAACTCTGTAATTGAAGGACAAACTAAACGAATTTTGAGCTCAATTATCTCAATGTCTATGAGAGATATCAACAATGTATCAACTGATAAAATATTGGTGATATTATGAAAAGAATTTTATCAGTTGACAATTTTGTGATATCTTTGACAGGAAATGAGATAATAAAATGTAAGCTCAGGTTGGAGGTTTCCTAGTGGAGAATTAACGGGTTCTTTAAAGGGAGTTCTATTCTGAAATTGTGATGTATGGACGTTTCCTCGTAGCTAGTTCAAGCTAAATACTCAAAATCTTTAAAAATATTTATTCAACAAGATTATTCAATTTTCAAAAAATCAGAATAGTGTTCCAGATTGTAATCGTGAATATCGATAATGTCTTCCATGATAGCAACCATTTTTCTCATTACATCCTTCCGTGCTTCATCTTTCTCTTCCTCTGAWATTTTGGCATTATCAATGAATGAATAAATATCCGGAATGAGCAACATAGCCATCATTGGAGCATACAAGTTGTAGCATTCTTGAAGCTGAAAAATTAAATAATTTTAGATTAATTGAATATTACACAAGAATCACCTCATGGAGCGAGAACAATTCTTCGCCATAAACACTGGTGAAGGTGTCGTAGTAGCACTTCAAAATCTCTGAACCTCGTTCACGACGGTCCTGAGAAAAATTTCGGTTTAAAAAATGCAAGTTTTATTTTTGAACTAACCGTTTCCGAAAGACATCCCAACAATAGTCTCGAGAGGTCCAATCCAGGAGGCAATCTAGAGACTGCTTGCCAGTCAATCATTGCTTCCAACTTCAGTTTTCCTTCCTTATTCGCACTGTAGATCACATTGGATTGCCATAAATCTCCATGATTCAAAACTAGCTTGAATCCCAAAGTCTTTGAAATATCAGTATATTTGGGAACCACTGCCTTGTAGTGTTCAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCAGAATAGTGTTCCAGATTG</pcr_primer_p1>
		<pcr_primer_p2>CATGAGGTGATTCTTGTGTAATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATCAGAATAGTGTTCCAGATTGTAATCGTGAATATCGATAATGTCTTCCATGATAGCAACCATTTTTCTCATTACATCCTTCCGTGCTTCATCTTTCTCTTCCTCTGATATTTTGGCATTATCAATGAATGAATAAATATCCGGAATGAGCAACATAGCCATCATTGGAGCATACAAGTTGTAGCATTCTTGAAGCTGAAAAATTAAATAATTTTAGATTAATTGAATATTACACAAGAATCACCTCATG</canonical_amplicon>
		<polymorphic_amplicon>AATCAGAATAGTGTTCCAGATTGTAATCGTGAATATCGATAATGTCTTCCATGATAGCAACCATTTTTCTCATTACATCCTTCCGTGCTTCATCTTTCTCTTCCTCTGAWATTTTGGCATTATCAATGAATGAATAAATATCCGGAATGAGCAACATAGCCATCATTGGAGCATACAAGTTGTAGCATTCTTGAAGCTGAAAAATTAAATAATTTTAGATTAATTGAATATTACACAAGAATCACCTCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22508</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>241761</contig_pos>
        <strand>+</strand>
        <context>TCYTCYGAWA[G/T]TTTGGCATTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATTTTTCTCATTACATCCTTCCGTGCTTCATCTTTCTCTTCCTCTGATA</left_flank>
        <right_flank>TTTGGCATTATCAATGAATGAATAAATATCCGGAATGAGCAACATAGCCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAAGTGATCCAAGGCTTGAAAAATAACTAATTGGAAAAAAATGAGTAGTTACCGTAAACTCTGTAATTGAAGGACAAACTAAACGAATTTTGAGCTCAATTATCTCAATGTCTATGAGAGATATCAACAATGTATCAACTGATAAAATATTGGTGATATTATGAAAAGAATTTTATCAGTTGACAATTTTGTGATATCTTTGACAGGAAATGAGATAATAAAATGTAAGCTCAGGTTGGAGGTTTCCTAGTGGAGAATTAACGGGTTCTTTAAAGGGAGTTCTATTCTGAAATTGTGATGTATGGACGTTTCCTCGTAGCTAGTTCAAGCTAAATACTCAAAATCTTTAAAAATATTTATTCAACAAGATTATTCAATTTTCAAAAAATCAGAATAGTGTTCCAGATTGTAATCGTGAATATCGATAATGTCTTCCATGATAGCAACCATTTTTCTCATTACATCCTTCCGTGCTTCATCTTTCTCTTCCTCTGATATTTTGGCATTATCAATGAATGAATAAATATCCGGAATGAGCAACATAGCCATCATTGGAGCATACAAGTTGTAGCATTCTTGAAGCTGAAAAATTAAATAATTTTAGATTAATTGAATATTACACAAGAATCACCTCATGGAGCGAGAACAATTCTTCGCCATAAACACTGGTGAAGGTGTCGTAGTAGCACTTCAAAATCTCTGAACCTCGTTCACGACGGTCCTGAGAAAAATTTCGGTTTAAAAAATGCAAGTTTTATTTTTGAACTAACCGTTTCCGAAAGACATCCCAACAATAGTCTCGAGAGGTCCAATCCAGGAGGCAATCTAGAGACTGCTTGCCAGTCAATCATTGCTTCCAACTTCAGTTTTCCTTCCTTATTCGCACTGTAGATCACATTGGATTGCCATAAATCTCCATGATTCAAAACTAGCTTGAATCCCAAAGTCTTTGAAATATCAGTATATTTGGGAACCACTGCCTTGTAGTGTTCAAACGC</canonical>
            <polymorphic>ACCAAGTGATCCAAGGCTTGAAAAATAACTAATTGGAAAAAAATGAGTAGTTACCGTAAACTCTGTAATTGAAGGACAAACTAAACGAATTTTGAGCTCAATTATCTCAATGTCTATGAGAGATATCAACAATGTATCAACTGATAAAATATTGGTGATATTATGAAAAGAATTTTATCAGTTGACAATTTTGTGATATCTTTGACAGGAAATGAGATAATAAAATGTAAGCTCAGGTTGGAGGTTTCCTAGTGGAGAATTAACGGGTTCTTTAAAGGGAGTTCTATTCTGAAATTGTGATGTATGGACGTTTCCTCGTAGCTAGTTCAAGCTAAATACTCAAAATCTTTAAAAATATTTATTCAACAAGATTATTCAATTTTCAAAAAATCAGAATAGTGTTCCAGATTGTAATCGTGAATATCGATAATGTCTTCCATGATAGCAACCATTTTTCTCATTACATCCTTCCGTGCTTCATCTTTCTCTTCCTCTGATAKTTTGGCATTATCAATGAATGAATAAATATCCGGAATGAGCAACATAGCCATCATTGGAGCATACAAGTTGTAGCATTCTTGAAGCTGAAAAATTAAATAATTTTAGATTAATTGAATATTACACAAGAATCACCTCATGGAGCGAGAACAATTCTTCGCCATAAACACTGGTGAAGGTGTCGTAGTAGCACTTCAAAATCTCTGAACCTCGTTCACGACGGTCCTGAGAAAAATTTCGGTTTAAAAAATGCAAGTTTTATTTTTGAACTAACCGTTTCCGAAAGACATCCCAACAATAGTCTCGAGAGGTCCAATCCAGGAGGCAATCTAGAGACTGCTTGCCAGTCAATCATTGCTTCCAACTTCAGTTTTCCTTCCTTATTCGCACTGTAGATCACATTGGATTGCCATAAATCTCCATGATTCAAAACTAGCTTGAATCCCAAAGTCTTTGAAATATCAGTATATTTGGGAACCACTGCCTTGTAGTGTTCAAACGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCAGAATAGTGTTCCAGATTG</pcr_primer_p1>
		<pcr_primer_p2>CATGAGGTGATTCTTGTGTAATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATCAGAATAGTGTTCCAGATTGTAATCGTGAATATCGATAATGTCTTCCATGATAGCAACCATTTTTCTCATTACATCCTTCCGTGCTTCATCTTTCTCTTCCTCTGATATTTTGGCATTATCAATGAATGAATAAATATCCGGAATGAGCAACATAGCCATCATTGGAGCATACAAGTTGTAGCATTCTTGAAGCTGAAAAATTAAATAATTTTAGATTAATTGAATATTACACAAGAATCACCTCATG</canonical_amplicon>
		<polymorphic_amplicon>AATCAGAATAGTGTTCCAGATTGTAATCGTGAATATCGATAATGTCTTCCATGATAGCAACCATTTTTCTCATTACATCCTTCCGTGCTTCATCTTTCTCTTCCTCTGATAKTTTGGCATTATCAATGAATGAATAAATATCCGGAATGAGCAACATAGCCATCATTGGAGCATACAAGTTGTAGCATTCTTGAAGCTGAAAAATTAAATAATTTTAGATTAATTGAATATTACACAAGAATCACCTCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22510</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>393265</contig_pos>
        <strand>+</strand>
        <context>ACGAGGTCCG[A/T]GTGCGCCGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAATCCAGCGTCTGATGGGTAGAGGAAGTGTTCAAGACTGACGAGGTCCG</left_flank>
        <right_flank>GTGCGCCGAGTCTTCTGGAGTGTAAACTTCAGAAGCATCCTTTTTGGATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTTTCACAGAACTCGTAGAATCGCTTGCCTCATGCTCAAACTCGAACATCCCACGTGTCATTTCTACCGATTGGACTTGTCGTGCTGTTGCTCGACAGAATAACATAGCGTTTTCGGATCGAGAGGCAACTCTGACACTATCCACCGATAAAGGAGTGAAACAAGTAAATTTGTCTGCGAAGGAGCTCGAGAAATTGTACTGGACAGTCAGCAAAGTGCAAGAATCGCTAGATGGACTGTTGGAAAGATGATTATTAAAAATTCATGAAAACTAATCTATTACAAAGATCCTACGAAAATAAACATTGAATATGAAAAAAAAACAATTATTCGAAAATCAACAAGAAAGCACCCGCTAGAACCTAACAAAACAACAGAAAAACAGATTAGGAATTTCTCAAAAATTTGTCATAAGCCACGGGAAAAGTTTTAGCAGCTAACATGGCGAATCCAGCGTCTGATGGGTAGAGGAAGTGTTCAAGACTGACGAGGTCCGAGTGCGCCGAGTCTTCTGGAGTGTAAACTTCAGAAGCATCCTTTTTGGATTCGCTTTTTTCTGCGAGTTGGTATTGAGCACGTCCGAGTCGATTCAAAAAGTCATGACGAGATTTGATGACGCTGGGGGAGCATCGTAGTATGAATGGGTGCTCCAGAATAGTTTCGTTATTAACTCTCATAACATCTCGAACGTATTTATATGTTCTTGAAATCAGTTTGGAATCTGAAAGTTCAGCATAATCTAACTATACAAAAAAGAAGAGAGCTTACCCATCATAAAAAGCCTTGGATCCTTTTGAACAAGAGTTTTCATTTGATTCATGTCGAAATTCAATTCCTTCGTAAACATCTTAACAAGCCTCTCTAATGGTCCAGTTCCAAACATTATAATTCGGGGCTCTTTGACAATTATCTCCCTTGTCACTTTTGCAGACAGCTTGAATTGTTGTTGCAACCATCCGAGACGTGAATCGATCAACTTAACACTACAATTCAGCCA</canonical>
            <polymorphic>AAACTTTCACAGAACTCGTAGAATCGCTTGCCTCATGCTCAAACTCGAACATCCCACGTGTCATTTCTACCGATTGGACTTGTCGTGCTGTTGCTCGACAGAATAACATAGCGTTTTCGGATCGAGAGGCAACTCTGACACTATCCACCGATAAAGGAGTGAAACAAGTAAATTTGTCTGCGAAGGAGCTCGAGAAATTGTACTGGACAGTCAGCAAAGTGCAAGAATCGCTAGATGGACTGTTGGAAAGATGATTATTAAAAATTCATGAAAACTAATCTATTACAAAGATCCTACGAAAATAAACATTGAATATGAAAAAAAAACAATTATTCGAAAATCAACAAGAAAGCACCCGCTAGAACCTAACAAAACAACAGAAAAACAGATTAGGAATTTCTCAAAAATTTGTCATAAGCCACGGGAAAAGTTTTAGCAGCTAACATGGCGAATCCAGCGTCTGATGGGTAGAGGAAGTGTTCAAGACTGACGAGGTCCGWGTGCGCCGAGTCTTCTGGAGTGTAAACTTCAGAAGCATCCTTTTTGGATTCGCTTTTTTCTGCGAGTTGGTATTGAGCACGTCCGAGTCGATTCAAAAAGTCATGACGAGATTTGATGACGCTGGGGGAGCATCGTAGTATGAATGGGTGCTCCAGAATAGTTTCGTTATTAACTCTCATAACATCTCGAACGTATTTATATGTTCTTGAAATCAGTTTGGAATCTGAAAGTTCAGCATAATCTAACTATACAAAAAAGAAGAGAGCTTACCCATCATAAAAAGCCTTGGATCCTTTTGAACAAGAGTTTTCATTTGATTCATGTCGAAATTCAATTCCTTCGTAAACATCTTAACAAGCCTCTCTAATGGTCCAGTTCCAAACATTATAATTCGGGGCTCTTTGACAATTATCTCCCTTGTCACTTTTGCAGACAGCTTGAATTGTTGTTGCAACCATCCGAGACGTGAATCGATCAACTTAACACTACAATTCAGCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>326 235 142 119 53 39 36 33 17</canonical_bands>
                <polymorphic_bands>326 235 142 119 69 53 39 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACCTAACAAAACAACAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATCTCGTCATGACTTTTTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACCTAACAAAACAACAGAAAAACAGATTAGGAATTTCTCAAAAATTTGTCATAAGCCACGGGAAAAGTTTTAGCAGCTAACATGGCGAATCCAGCGTCTGATGGGTAGAGGAAGTGTTCAAGACTGACGAGGTCCGAGTGCGCCGAGTCTTCTGGAGTGTAAACTTCAGAAGCATCCTTTTTGGATTCGCTTTTTTCTGCGAGTTGGTATTGAGCACGTCCGAGTCGATTCAAAAAGTCATGACGAGAT</canonical_amplicon>
		<polymorphic_amplicon>AACCTAACAAAACAACAGAAAAACAGATTAGGAATTTCTCAAAAATTTGTCATAAGCCACGGGAAAAGTTTTAGCAGCTAACATGGCGAATCCAGCGTCTGATGGGTAGAGGAAGTGTTCAAGACTGACGAGGTCCGWGTGCGCCGAGTCTTCTGGAGTGTAAACTTCAGAAGCATCCTTTTTGGATTCGCTTTTTTCTGCGAGTTGGTATTGAGCACGTCCGAGTCGATTCAAAAAGTCATGACGAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22511</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>392878</contig_pos>
        <strand>+</strand>
        <context>ATAACATAGC[A/G]TTTTCGGATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTCTACCGATTGGACTTGTCGTGCTGTTGCTCGACAGAATAACATAGC</left_flank>
        <right_flank>TTTTCGGATCGAGAGGCAACTCTGACACTATCCACCGATAAAGGAGTGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAATCACAAGCAGAGTAAGTAGAAATCTCGCAAAACTTCAAAATTCGTTATTCATCAGGCCTCAATTCGAATTTTCGAGAAATATCCACTGAAAGAAGAAAATGTTTCAACTCTGTTCAGCACTGAAGAAATGGCTGGAGGAGAGCCAGAAGAGCTGTACAAACTGGTAGTTTATTTAATAAAATTTGAAAATCAATCCTTTTTTATTCAGTGCCGACAACTTCTGAACGTATGGAAATATGCCATATTCTTTCAACCGAAGCCTGAGAATTTTGCGAATCTTCTACAAGAGGTTCGATATACTTCACTAGCTTTTAAGAGCTTTTTTTCAGTCAAATTATCCGGCACCTGTAATCAAAGGGATTCTGGAAGCATACTCCTCCGAAACTTTCACAGAACTCGTAGAATCGCTTGCCTCATGCTCAAACTCGAACATCCCACGTGTCATTTCTACCGATTGGACTTGTCGTGCTGTTGCTCGACAGAATAACATAGCGTTTTCGGATCGAGAGGCAACTCTGACACTATCCACCGATAAAGGAGTGAAACAAGTAAATTTGTCTGCGAAGGAGCTCGAGAAATTGTACTGGACAGTCAGCAAAGTGCAAGAATCGCTAGATGGACTGTTGGAAAGATGATTATTAAAAATTCATGAAAACTAATCTATTACAAAGATCCTACGAAAATAAACATTGAATATGAAAAAAAAACAATTATTCGAAAATCAACAAGAAAGCACCCGCTAGAACCTAACAAAACAACAGAAAAACAGATTAGGAATTTCTCAAAAATTTGTCATAAGCCACGGGAAAAGTTTTAGCAGCTAACATGGCGAATCCAGCGTCTGATGGGTAGAGGAAGTGTTCAAGACTGACGAGGTCCGAGTGCGCCGAGTCTTCTGGAGTGTAAACTTCAGAAGCATCCTTTTTGGATTCGCTTTTTTCTGCGAGTTGGTATTGAGCACGTCCGAGTCGATTCAAAAAGTCATGACGAGATT</canonical>
            <polymorphic>CAAAAATCACAAGCAGAGTAAGTAGAAATCTCGCAAAACTTCAAAATTCGTTATTCATCAGGCCTCAATTCGAATTTTCGAGAAATATCCACTGAAAGAAGAAAATGTTTCAACTCTGTTCAGCACTGAAGAAATGGCTGGAGGAGAGCCAGAAGAGCTGTACAAACTGGTAGTTTATTTAATAAAATTTGAAAATCAATCCTTTTTTATTCAGTGCCGACAACTTCTGAACGTATGGAAATATGCCATATTCTTTCAACCGAAGCCTGAGAATTTTGCGAATCTTCTACAAGAGGTTCGATATACTTCACTAGCTTTTAAGAGCTTTTTTTCAGTCAAATTATCCGGCACCTGTAATCAAAGGGATTCTGGAAGCATACTCCTCCGAAACTTTCACAGAACTCGTAGAATCGCTTGCCTCATGCTCAAACTCGAACATCCCACGTGTCATTTCTACCGATTGGACTTGTCGTGCTGTTGCTCGACAGAATAACATAGCRTTTTCGGATCGAGAGGCAACTCTGACACTATCCACCGATAAAGGAGTGAAACAAGTAAATTTGTCTGCGAAGGAGCTCGAGAAATTGTACTGGACAGTCAGCAAAGTGCAAGAATCGCTAGATGGACTGTTGGAAAGATGATTATTAAAAATTCATGAAAACTAATCTATTACAAAGATCCTACGAAAATAAACATTGAATATGAAAAAAAAACAATTATTCGAAAATCAACAAGAAAGCACCCGCTAGAACCTAACAAAACAACAGAAAAACAGATTAGGAATTTCTCAAAAATTTGTCATAAGCCACGGGAAAAGTTTTAGCAGCTAACATGGCGAATCCAGCGTCTGATGGGTAGAGGAAGTGTTCAAGACTGACGAGGTCCGAGTGCGCCGAGTCTTCTGGAGTGTAAACTTCAGAAGCATCCTTTTTGGATTCGCTTTTTTCTGCGAGTTGGTATTGAGCACGTCCGAGTCGATTCAAAAAGTCATGACGAGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCATTTCTACCGATTGGACT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTATTTTCGTAGGATCTTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCATTTCTACCGATTGGACTTGTCGTGCTGTTGCTCGACAGAATAACATAGCGTTTTCGGATCGAGAGGCAACTCTGACACTATCCACCGATAAAGGAGTGAAACAAGTAAATTTGTCTGCGAAGGAGCTCGAGAAATTGTACTGGACAGTCAGCAAAGTGCAAGAATCGCTAGATGGACTGTTGGAAAGATGATTATTAAAAATTCATGAAAACTAATCTATTACAAAGATCCTACGAAAATAAACA</canonical_amplicon>
		<polymorphic_amplicon>GTCATTTCTACCGATTGGACTTGTCGTGCTGTTGCTCGACAGAATAACATAGCRTTTTCGGATCGAGAGGCAACTCTGACACTATCCACCGATAAAGGAGTGAAACAAGTAAATTTGTCTGCGAAGGAGCTCGAGAAATTGTACTGGACAGTCAGCAAAGTGCAAGAATCGCTAGATGGACTGTTGGAAAGATGATTATTAAAAATTCATGAAAACTAATCTATTACAAAGATCCTACGAAAATAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22513</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>562203</contig_pos>
        <strand>+</strand>
        <context>TAGCTTGAAA[G/T]TTGCTTATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGAGTGGGCACACCTGAAAATCACCATTTTGAGATCTTGTAGCTTGAAA</left_flank>
        <right_flank>TTGCTTATTCAAGTATGGCCGATAACAGGTAAACGTGTAAATTTTAGTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGCAAATAAATTACGCGAGACGACCCCCATCTCCGGCGGCTTCCGAACGGTGGTGCCCGCAACCTGAACCTAAACAGCCTAAACACATAAACGGCACGAGAAGTTGTGTTGTGAATTATGAGAAACAGTGGGACACACAATCCGTTCTTTTATTTTTAGACAGGGAATTTTTGAGATGAGGACATCCGAACAGGGGAGGGACAAACGAGATGATAAATCAGATGGTTGGGATTCGTAATAAATAAAAAATATCTCGTAAATCACAAAAGAAACCAAACTGACGCTGGTGATTTAGGATGAAAAGCAAAAAAAAAGGGAATATTCACAAGGGAGAATAGAGGATATTAGTGAATACAGTGATGAAGAGAGTTCCGATGAAGAGCCGTTGGGAAAAGAGGTTGAATATCGATTAGTGTCCGTACTTTTGGAACTCCCACTCACGGTTATCGAGTGGGCACACCTGAAAATCACCATTTTGAGATCTTGTAGCTTGAAATTTGCTTATTCAAGTATGGCCGATAACAGGTAAACGTGTAAATTTTAGTTTGAAATGCGTACCTGACGTGTCTTGAGCCAACGAGAGATGCAGTGGAAATGGAACGCATGATTGCAGTTACCCCAGGCAACAGTACATTCCTCCTTGAGTCCAGCAGCTTGATTTGCCTGGCACTCGATGCACAGATCCATGATGTGATTGCGGCAAATGGCGCAGTTGTCGACTTGAATGTCCCACGCCCAGAGAGCGACAGCACTCCACTTTTTGACCTGGAAATGTATTTTTATGCGATGCCCATGGAATGTCTAGTTACCTCGAAACGCTTCTTGACTGTCTGGTTCGAGACCTCCTCGACCTCCATTGCGCTGCTGTCACTTGCTTGGGCCATCTTGTAATTACGACATCGTTAACTGCTGCCAAGTACGATAAGGTAGAAAGATATTTAAGATTGAAAAACAAGAAAAATCAGCAATAAAAATAAAACGGAGAACTGACGAAGGG</canonical>
            <polymorphic>AATTGCAAATAAATTACGCGAGACGACCCCCATCTCCGGCGGCTTCCGAACGGTGGTGCCCGCAACCTGAACCTAAACAGCCTAAACACATAAACGGCACGAGAAGTTGTGTTGTGAATTATGAGAAACAGTGGGACACACAATCCGTTCTTTTATTTTTAGACAGGGAATTTTTGAGATGAGGACATCCGAACAGGGGAGGGACAAACGAGATGATAAATCAGATGGTTGGGATTCGTAATAAATAAAAAATATCTCGTAAATCACAAAAGAAACCAAACTGACGCTGGTGATTTAGGATGAAAAGCAAAAAAAAAGGGAATATTCACAAGGGAGAATAGAGGATATTAGTGAATACAGTGATGAAGAGAGTTCCGATGAAGAGCCGTTGGGAAAAGAGGTTGAATATCGATTAGTGTCCGTACTTTTGGAACTCCCACTCACGGTTATCGAGTGGGCACACCTGAAAATCACCATTTTGAGATCTTGTAGCTTGAAAKTTGCTTATTCAAGTATGGCCGATAACAGGTAAACGTGTAAATTTTAGTTTGAAATGCGTACCTGACGTGTCTTGAGCCAACGAGAGATGCAGTGGAAATGGAACGCATGATTGCAGTTACCCCAGGCAACAGTACATTCCTCCTTGAGTCCAGCAGCTTGATTTGCCTGGCACTCGATGCACAGATCCATGATGTGATTGCGGCAAATGGCGCAGTTGTCGACTTGAATGTCCCACGCCCAGAGAGCGACAGCACTCCACTTTTTGACCTGGAAATGTATTTTTATGCGATGCCCATGGAATGTCTAGTTACCTCGAAACGCTTCTTGACTGTCTGGTTCGAGACCTCCTCGACCTCCATTGCGCTGCTGTCACTTGCTTGGGCCATCTTGTAATTACGACATCGTTAACTGCTGCCAAGTACGATAAGGTAGAAAGATATTTAAGATTGAAAAACAAGAAAAATCAGCAATAAAAATAAAACGGAGAACTGACGAAGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>461 329 168 42</canonical_bands>
                <polymorphic_bands>461 371 168</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>353 329 108 105 52 42 11 0</canonical_bands>
                <polymorphic_bands>371 353 108 105 52 11 0</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGTTGAATATCGATTAGTGTC</pcr_primer_p1>
		<pcr_primer_p2>TCAAGGAGGAATGTACTGTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGGTTGAATATCGATTAGTGTCCGTACTTTTGGAACTCCCACTCACGGTTATCGAGTGGGCACACCTGAAAATCACCATTTTGAGATCTTGTAGCTTGAAATTTGCTTATTCAAGTATGGCCGATAACAGGTAAACGTGTAAATTTTAGTTTGAAATGCGTACCTGACGTGTCTTGAGCCAACGAGAGATGCAGTGGAAATGGAACGCATGATTGCAGTTACCCCAGGCAACAGTACATTCCTCCTTGA</canonical_amplicon>
		<polymorphic_amplicon>GAGGTTGAATATCGATTAGTGTCCGTACTTTTGGAACTCCCACTCACGGTTATCGAGTGGGCACACCTGAAAATCACCATTTTGAGATCTTGTAGCTTGAAAKTTGCTTATTCAAGTATGGCCGATAACAGGTAAACGTGTAAATTTTAGTTTGAAATGCGTACCTGACGTGTCTTGAGCCAACGAGAGATGCAGTGGAAATGGAACGCATGATTGCAGTTACCCCAGGCAACAGTACATTCCTCCTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22514</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>562222</contig_pos>
        <strand>+</strand>
        <context>TCAAGTATGG[C/T]CGATAACAGR</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCACCATTTTGAGATCTTGTAGCTTGAAATTTGCTTATTCAAGTATGG</left_flank>
        <right_flank>CGATAACAGGTAAACGTGTAAATTTTAGTTTGAAATGCGTACCTGACGTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGACGACCCCCATCTCCGGCGGCTTCCGAACGGTGGTGCCCGCAACCTGAACCTAAACAGCCTAAACACATAAACGGCACGAGAAGTTGTGTTGTGAATTATGAGAAACAGTGGGACACACAATCCGTTCTTTTATTTTTAGACAGGGAATTTTTGAGATGAGGACATCCGAACAGGGGAGGGACAAACGAGATGATAAATCAGATGGTTGGGATTCGTAATAAATAAAAAATATCTCGTAAATCACAAAAGAAACCAAACTGACGCTGGTGATTTAGGATGAAAAGCAAAAAAAAAGGGAATATTCACAAGGGAGAATAGAGGATATTAGTGAATACAGTGATGAAGAGAGTTCCGATGAAGAGCCGTTGGGAAAAGAGGTTGAATATCGATTAGTGTCCGTACTTTTGGAACTCCCACTCACGGTTATCGAGTGGGCACACCTGAAAATCACCATTTTGAGATCTTGTAGCTTGAAATTTGCTTATTCAAGTATGGCCGATAACAGGTAAACGTGTAAATTTTAGTTTGAAATGCGTACCTGACGTGTCTTGAGCCAACGAGAGATGCAGTGGAAATGGAACGCATGATTGCAGTTACCCCAGGCAACAGTACATTCCTCCTTGAGTCCAGCAGCTTGATTTGCCTGGCACTCGATGCACAGATCCATGATGTGATTGCGGCAAATGGCGCAGTTGTCGACTTGAATGTCCCACGCCCAGAGAGCGACAGCACTCCACTTTTTGACCTGGAAATGTATTTTTATGCGATGCCCATGGAATGTCTAGTTACCTCGAAACGCTTCTTGACTGTCTGGTTCGAGACCTCCTCGACCTCCATTGCGCTGCTGTCACTTGCTTGGGCCATCTTGTAATTACGACATCGTTAACTGCTGCCAAGTACGATAAGGTAGAAAGATATTTAAGATTGAAAAACAAGAAAAATCAGCAATAAAAATAAAACGGAGAACTGACGAAGGGAAACAGAAGAAGGATGAAA</canonical>
            <polymorphic>GAGACGACCCCCATCTCCGGCGGCTTCCGAACGGTGGTGCCCGCAACCTGAACCTAAACAGCCTAAACACATAAACGGCACGAGAAGTTGTGTTGTGAATTATGAGAAACAGTGGGACACACAATCCGTTCTTTTATTTTTAGACAGGGAATTTTTGAGATGAGGACATCCGAACAGGGGAGGGACAAACGAGATGATAAATCAGATGGTTGGGATTCGTAATAAATAAAAAATATCTCGTAAATCACAAAAGAAACCAAACTGACGCTGGTGATTTAGGATGAAAAGCAAAAAAAAAGGGAATATTCACAAGGGAGAATAGAGGATATTAGTGAATACAGTGATGAAGAGAGTTCCGATGAAGAGCCGTTGGGAAAAGAGGTTGAATATCGATTAGTGTCCGTACTTTTGGAACTCCCACTCACGGTTATCGAGTGGGCACACCTGAAAATCACCATTTTGAGATCTTGTAGCTTGAAATTTGCTTATTCAAGTATGGYCGATAACAGGTAAACGTGTAAATTTTAGTTTGAAATGCGTACCTGACGTGTCTTGAGCCAACGAGAGATGCAGTGGAAATGGAACGCATGATTGCAGTTACCCCAGGCAACAGTACATTCCTCCTTGAGTCCAGCAGCTTGATTTGCCTGGCACTCGATGCACAGATCCATGATGTGATTGCGGCAAATGGCGCAGTTGTCGACTTGAATGTCCCACGCCCAGAGAGCGACAGCACTCCACTTTTTGACCTGGAAATGTATTTTTATGCGATGCCCATGGAATGTCTAGTTACCTCGAAACGCTTCTTGACTGTCTGGTTCGAGACCTCCTCGACCTCCATTGCGCTGCTGTCACTTGCTTGGGCCATCTTGTAATTACGACATCGTTAACTGCTGCCAAGTACGATAAGGTAGAAAGATATTTAAGATTGAAAAACAAGAAAAATCAGCAATAAAAATAAAACGGAGAACTGACGAAGGGAAACAGAAGAAGGATGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>494 247 143 83 17 16</canonical_bands>
                <polymorphic_bands>577 247 143 17 16</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>499 365 136</canonical_bands>
                <polymorphic_bands>864 136</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>305 227 136 107 80 58 38 26 23</canonical_bands>
                <polymorphic_bands>305 227 136 107 84 80 38 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGTTGAATATCGATTAGTGTC</pcr_primer_p1>
		<pcr_primer_p2>TCAAGGAGGAATGTACTGTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGGTTGAATATCGATTAGTGTCCGTACTTTTGGAACTCCCACTCACGGTTATCGAGTGGGCACACCTGAAAATCACCATTTTGAGATCTTGTAGCTTGAAATTTGCTTATTCAAGTATGGCCGATAACAGGTAAACGTGTAAATTTTAGTTTGAAATGCGTACCTGACGTGTCTTGAGCCAACGAGAGATGCAGTGGAAATGGAACGCATGATTGCAGTTACCCCAGGCAACAGTACATTCCTCCTTGA</canonical_amplicon>
		<polymorphic_amplicon>GAGGTTGAATATCGATTAGTGTCCGTACTTTTGGAACTCCCACTCACGGTTATCGAGTGGGCACACCTGAAAATCACCATTTTGAGATCTTGTAGCTTGAAATTTGCTTATTCAAGTATGGYCGATAACAGGTAAACGTGTAAATTTTAGTTTGAAATGCGTACCTGACGTGTCTTGAGCCAACGAGAGATGCAGTGGAAATGGAACGCATGATTGCAGTTACCCCAGGCAACAGTACATTCCTCCTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22515</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>562232</contig_pos>
        <strand>+</strand>
        <context>YCGATAACAG[A/G]TAAACRTGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAGATCTTGTAGCTTGAAATTTGCTTATTCAAGTATGGCCGATAACAG</left_flank>
        <right_flank>TAAACGTGTAAATTTTAGTTTGAAATGCGTACCTGACGTGTCTTGAGCCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCATCTCCGGCGGCTTCCGAACGGTGGTGCCCGCAACCTGAACCTAAACAGCCTAAACACATAAACGGCACGAGAAGTTGTGTTGTGAATTATGAGAAACAGTGGGACACACAATCCGTTCTTTTATTTTTAGACAGGGAATTTTTGAGATGAGGACATCCGAACAGGGGAGGGACAAACGAGATGATAAATCAGATGGTTGGGATTCGTAATAAATAAAAAATATCTCGTAAATCACAAAAGAAACCAAACTGACGCTGGTGATTTAGGATGAAAAGCAAAAAAAAAGGGAATATTCACAAGGGAGAATAGAGGATATTAGTGAATACAGTGATGAAGAGAGTTCCGATGAAGAGCCGTTGGGAAAAGAGGTTGAATATCGATTAGTGTCCGTACTTTTGGAACTCCCACTCACGGTTATCGAGTGGGCACACCTGAAAATCACCATTTTGAGATCTTGTAGCTTGAAATTTGCTTATTCAAGTATGGCCGATAACAGGTAAACGTGTAAATTTTAGTTTGAAATGCGTACCTGACGTGTCTTGAGCCAACGAGAGATGCAGTGGAAATGGAACGCATGATTGCAGTTACCCCAGGCAACAGTACATTCCTCCTTGAGTCCAGCAGCTTGATTTGCCTGGCACTCGATGCACAGATCCATGATGTGATTGCGGCAAATGGCGCAGTTGTCGACTTGAATGTCCCACGCCCAGAGAGCGACAGCACTCCACTTTTTGACCTGGAAATGTATTTTTATGCGATGCCCATGGAATGTCTAGTTACCTCGAAACGCTTCTTGACTGTCTGGTTCGAGACCTCCTCGACCTCCATTGCGCTGCTGTCACTTGCTTGGGCCATCTTGTAATTACGACATCGTTAACTGCTGCCAAGTACGATAAGGTAGAAAGATATTTAAGATTGAAAAACAAGAAAAATCAGCAATAAAAATAAAACGGAGAACTGACGAAGGGAAACAGAAGAAGGATGAAATCTACTATGG</canonical>
            <polymorphic>CCATCTCCGGCGGCTTCCGAACGGTGGTGCCCGCAACCTGAACCTAAACAGCCTAAACACATAAACGGCACGAGAAGTTGTGTTGTGAATTATGAGAAACAGTGGGACACACAATCCGTTCTTTTATTTTTAGACAGGGAATTTTTGAGATGAGGACATCCGAACAGGGGAGGGACAAACGAGATGATAAATCAGATGGTTGGGATTCGTAATAAATAAAAAATATCTCGTAAATCACAAAAGAAACCAAACTGACGCTGGTGATTTAGGATGAAAAGCAAAAAAAAAGGGAATATTCACAAGGGAGAATAGAGGATATTAGTGAATACAGTGATGAAGAGAGTTCCGATGAAGAGCCGTTGGGAAAAGAGGTTGAATATCGATTAGTGTCCGTACTTTTGGAACTCCCACTCACGGTTATCGAGTGGGCACACCTGAAAATCACCATTTTGAGATCTTGTAGCTTGAAATTTGCTTATTCAAGTATGGCCGATAACAGRTAAACGTGTAAATTTTAGTTTGAAATGCGTACCTGACGTGTCTTGAGCCAACGAGAGATGCAGTGGAAATGGAACGCATGATTGCAGTTACCCCAGGCAACAGTACATTCCTCCTTGAGTCCAGCAGCTTGATTTGCCTGGCACTCGATGCACAGATCCATGATGTGATTGCGGCAAATGGCGCAGTTGTCGACTTGAATGTCCCACGCCCAGAGAGCGACAGCACTCCACTTTTTGACCTGGAAATGTATTTTTATGCGATGCCCATGGAATGTCTAGTTACCTCGAAACGCTTCTTGACTGTCTGGTTCGAGACCTCCTCGACCTCCATTGCGCTGCTGTCACTTGCTTGGGCCATCTTGTAATTACGACATCGTTAACTGCTGCCAAGTACGATAAGGTAGAAAGATATTTAAGATTGAAAAACAAGAAAAATCAGCAATAAAAATAAAACGGAGAACTGACGAAGGGAAACAGAAGAAGGATGAAATCTACTATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>504 247 143 83 23</canonical_bands>
                <polymorphic_bands>587 247 143 23</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 189 187 122</canonical_bands>
                <polymorphic_bands>691 187 122</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGTTGAATATCGATTAGTGTC</pcr_primer_p1>
		<pcr_primer_p2>TCAAGGAGGAATGTACTGTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGGTTGAATATCGATTAGTGTCCGTACTTTTGGAACTCCCACTCACGGTTATCGAGTGGGCACACCTGAAAATCACCATTTTGAGATCTTGTAGCTTGAAATTTGCTTATTCAAGTATGGCCGATAACAGGTAAACGTGTAAATTTTAGTTTGAAATGCGTACCTGACGTGTCTTGAGCCAACGAGAGATGCAGTGGAAATGGAACGCATGATTGCAGTTACCCCAGGCAACAGTACATTCCTCCTTGA</canonical_amplicon>
		<polymorphic_amplicon>GAGGTTGAATATCGATTAGTGTCCGTACTTTTGGAACTCCCACTCACGGTTATCGAGTGGGCACACCTGAAAATCACCATTTTGAGATCTTGTAGCTTGAAATTTGCTTATTCAAGTATGGCCGATAACAGRTAAACGTGTAAATTTTAGTTTGAAATGCGTACCTGACGTGTCTTGAGCCAACGAGAGATGCAGTGGAAATGGAACGCATGATTGCAGTTACCCCAGGCAACAGTACATTCCTCCTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22516</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>562238</contig_pos>
        <strand>+</strand>
        <context>ACAGRTAAAC[A/G]TGTAAATTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTGTAGCTTGAAATTTGCTTATTCAAGTATGGCCGATAACAGGTAAAC</left_flank>
        <right_flank>TGTAAATTTTAGTTTGAAATGCGTACCTGACGTGTCTTGAGCCAACGAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGGCGGCTTCCGAACGGTGGTGCCCGCAACCTGAACCTAAACAGCCTAAACACATAAACGGCACGAGAAGTTGTGTTGTGAATTATGAGAAACAGTGGGACACACAATCCGTTCTTTTATTTTTAGACAGGGAATTTTTGAGATGAGGACATCCGAACAGGGGAGGGACAAACGAGATGATAAATCAGATGGTTGGGATTCGTAATAAATAAAAAATATCTCGTAAATCACAAAAGAAACCAAACTGACGCTGGTGATTTAGGATGAAAAGCAAAAAAAAAGGGAATATTCACAAGGGAGAATAGAGGATATTAGTGAATACAGTGATGAAGAGAGTTCCGATGAAGAGCCGTTGGGAAAAGAGGTTGAATATCGATTAGTGTCCGTACTTTTGGAACTCCCACTCACGGTTATCGAGTGGGCACACCTGAAAATCACCATTTTGAGATCTTGTAGCTTGAAATTTGCTTATTCAAGTATGGCCGATAACAGGTAAACGTGTAAATTTTAGTTTGAAATGCGTACCTGACGTGTCTTGAGCCAACGAGAGATGCAGTGGAAATGGAACGCATGATTGCAGTTACCCCAGGCAACAGTACATTCCTCCTTGAGTCCAGCAGCTTGATTTGCCTGGCACTCGATGCACAGATCCATGATGTGATTGCGGCAAATGGCGCAGTTGTCGACTTGAATGTCCCACGCCCAGAGAGCGACAGCACTCCACTTTTTGACCTGGAAATGTATTTTTATGCGATGCCCATGGAATGTCTAGTTACCTCGAAACGCTTCTTGACTGTCTGGTTCGAGACCTCCTCGACCTCCATTGCGCTGCTGTCACTTGCTTGGGCCATCTTGTAATTACGACATCGTTAACTGCTGCCAAGTACGATAAGGTAGAAAGATATTTAAGATTGAAAAACAAGAAAAATCAGCAATAAAAATAAAACGGAGAACTGACGAAGGGAAACAGAAGAAGGATGAAATCTACTATGGTGAAAG</canonical>
            <polymorphic>CCGGCGGCTTCCGAACGGTGGTGCCCGCAACCTGAACCTAAACAGCCTAAACACATAAACGGCACGAGAAGTTGTGTTGTGAATTATGAGAAACAGTGGGACACACAATCCGTTCTTTTATTTTTAGACAGGGAATTTTTGAGATGAGGACATCCGAACAGGGGAGGGACAAACGAGATGATAAATCAGATGGTTGGGATTCGTAATAAATAAAAAATATCTCGTAAATCACAAAAGAAACCAAACTGACGCTGGTGATTTAGGATGAAAAGCAAAAAAAAAGGGAATATTCACAAGGGAGAATAGAGGATATTAGTGAATACAGTGATGAAGAGAGTTCCGATGAAGAGCCGTTGGGAAAAGAGGTTGAATATCGATTAGTGTCCGTACTTTTGGAACTCCCACTCACGGTTATCGAGTGGGCACACCTGAAAATCACCATTTTGAGATCTTGTAGCTTGAAATTTGCTTATTCAAGTATGGCCGATAACAGGTAAACRTGTAAATTTTAGTTTGAAATGCGTACCTGACGTGTCTTGAGCCAACGAGAGATGCAGTGGAAATGGAACGCATGATTGCAGTTACCCCAGGCAACAGTACATTCCTCCTTGAGTCCAGCAGCTTGATTTGCCTGGCACTCGATGCACAGATCCATGATGTGATTGCGGCAAATGGCGCAGTTGTCGACTTGAATGTCCCACGCCCAGAGAGCGACAGCACTCCACTTTTTGACCTGGAAATGTATTTTTATGCGATGCCCATGGAATGTCTAGTTACCTCGAAACGCTTCTTGACTGTCTGGTTCGAGACCTCCTCGACCTCCATTGCGCTGCTGTCACTTGCTTGGGCCATCTTGTAATTACGACATCGTTAACTGCTGCCAAGTACGATAAGGTAGAAAGATATTTAAGATTGAAAAACAAGAAAAATCAGCAATAAAAATAAAACGGAGAACTGACGAAGGGAAACAGAAGAAGGATGAAATCTACTATGGTGAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>498 470 32</canonical_bands>
                <polymorphic_bands>530 470</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>158 126 114 78 64 56 39 36 32 30 26 25 25 21 20 19 17 15 13 12 11 11 9 9 5 5 5 4 4 4 3 2 2</canonical_bands>
                <polymorphic_bands>158 126 114 96 78 56 39 36 30 26 25 25 21 20 19 17 15 13 12 11 11 9 9 5 5 5 4 4 4 3 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>498 470 32</canonical_bands>
                <polymorphic_bands>530 470</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGTTGAATATCGATTAGTGTC</pcr_primer_p1>
		<pcr_primer_p2>TCAAGGAGGAATGTACTGTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGGTTGAATATCGATTAGTGTCCGTACTTTTGGAACTCCCACTCACGGTTATCGAGTGGGCACACCTGAAAATCACCATTTTGAGATCTTGTAGCTTGAAATTTGCTTATTCAAGTATGGCCGATAACAGGTAAACGTGTAAATTTTAGTTTGAAATGCGTACCTGACGTGTCTTGAGCCAACGAGAGATGCAGTGGAAATGGAACGCATGATTGCAGTTACCCCAGGCAACAGTACATTCCTCCTTGA</canonical_amplicon>
		<polymorphic_amplicon>GAGGTTGAATATCGATTAGTGTCCGTACTTTTGGAACTCCCACTCACGGTTATCGAGTGGGCACACCTGAAAATCACCATTTTGAGATCTTGTAGCTTGAAATTTGCTTATTCAAGTATGGCCGATAACAGGTAAACRTGTAAATTTTAGTTTGAAATGCGTACCTGACGTGTCTTGAGCCAACGAGAGATGCAGTGGAAATGGAACGCATGATTGCAGTTACCCCAGGCAACAGTACATTCCTCCTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22517</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>562249</contig_pos>
        <strand>+</strand>
        <context>TGTAAATTTT[A/C]GTTTGAAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAATTTGCTTATTCAAGTATGGCCGATAACAGGTAAACGTGTAAATTTT</left_flank>
        <right_flank>GTTTGAAATGCGTACCTGACGTGTCTTGAGCCAACGAGAGATGCAGTGGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAACGGTGGTGCCCGCAACCTGAACCTAAACAGCCTAAACACATAAACGGCACGAGAAGTTGTGTTGTGAATTATGAGAAACAGTGGGACACACAATCCGTTCTTTTATTTTTAGACAGGGAATTTTTGAGATGAGGACATCCGAACAGGGGAGGGACAAACGAGATGATAAATCAGATGGTTGGGATTCGTAATAAATAAAAAATATCTCGTAAATCACAAAAGAAACCAAACTGACGCTGGTGATTTAGGATGAAAAGCAAAAAAAAAGGGAATATTCACAAGGGAGAATAGAGGATATTAGTGAATACAGTGATGAAGAGAGTTCCGATGAAGAGCCGTTGGGAAAAGAGGTTGAATATCGATTAGTGTCCGTACTTTTGGAACTCCCACTCACGGTTATCGAGTGGGCACACCTGAAAATCACCATTTTGAGATCTTGTAGCTTGAAATTTGCTTATTCAAGTATGGCCGATAACAGGTAAACGTGTAAATTTTAGTTTGAAATGCGTACCTGACGTGTCTTGAGCCAACGAGAGATGCAGTGGAAATGGAACGCATGATTGCAGTTACCCCAGGCAACAGTACATTCCTCCTTGAGTCCAGCAGCTTGATTTGCCTGGCACTCGATGCACAGATCCATGATGTGATTGCGGCAAATGGCGCAGTTGTCGACTTGAATGTCCCACGCCCAGAGAGCGACAGCACTCCACTTTTTGACCTGGAAATGTATTTTTATGCGATGCCCATGGAATGTCTAGTTACCTCGAAACGCTTCTTGACTGTCTGGTTCGAGACCTCCTCGACCTCCATTGCGCTGCTGTCACTTGCTTGGGCCATCTTGTAATTACGACATCGTTAACTGCTGCCAAGTACGATAAGGTAGAAAGATATTTAAGATTGAAAAACAAGAAAAATCAGCAATAAAAATAAAACGGAGAACTGACGAAGGGAAACAGAAGAAGGATGAAATCTACTATGGTGAAAGGACGACAGAAA</canonical>
            <polymorphic>CGAACGGTGGTGCCCGCAACCTGAACCTAAACAGCCTAAACACATAAACGGCACGAGAAGTTGTGTTGTGAATTATGAGAAACAGTGGGACACACAATCCGTTCTTTTATTTTTAGACAGGGAATTTTTGAGATGAGGACATCCGAACAGGGGAGGGACAAACGAGATGATAAATCAGATGGTTGGGATTCGTAATAAATAAAAAATATCTCGTAAATCACAAAAGAAACCAAACTGACGCTGGTGATTTAGGATGAAAAGCAAAAAAAAAGGGAATATTCACAAGGGAGAATAGAGGATATTAGTGAATACAGTGATGAAGAGAGTTCCGATGAAGAGCCGTTGGGAAAAGAGGTTGAATATCGATTAGTGTCCGTACTTTTGGAACTCCCACTCACGGTTATCGAGTGGGCACACCTGAAAATCACCATTTTGAGATCTTGTAGCTTGAAATTTGCTTATTCAAGTATGGCCGATAACAGGTAAACGTGTAAATTTTMGTTTGAAATGCGTACCTGACGTGTCTTGAGCCAACGAGAGATGCAGTGGAAATGGAACGCATGATTGCAGTTACCCCAGGCAACAGTACATTCCTCCTTGAGTCCAGCAGCTTGATTTGCCTGGCACTCGATGCACAGATCCATGATGTGATTGCGGCAAATGGCGCAGTTGTCGACTTGAATGTCCCACGCCCAGAGAGCGACAGCACTCCACTTTTTGACCTGGAAATGTATTTTTATGCGATGCCCATGGAATGTCTAGTTACCTCGAAACGCTTCTTGACTGTCTGGTTCGAGACCTCCTCGACCTCCATTGCGCTGCTGTCACTTGCTTGGGCCATCTTGTAATTACGACATCGTTAACTGCTGCCAAGTACGATAAGGTAGAAAGATATTTAAGATTGAAAAACAAGAAAAATCAGCAATAAAAATAAAACGGAGAACTGACGAAGGGAAACAGAAGAAGGATGAAATCTACTATGGTGAAAGGACGACAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGTTGAATATCGATTAGTGTC</pcr_primer_p1>
		<pcr_primer_p2>TCAAGGAGGAATGTACTGTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGGTTGAATATCGATTAGTGTCCGTACTTTTGGAACTCCCACTCACGGTTATCGAGTGGGCACACCTGAAAATCACCATTTTGAGATCTTGTAGCTTGAAATTTGCTTATTCAAGTATGGCCGATAACAGGTAAACGTGTAAATTTTAGTTTGAAATGCGTACCTGACGTGTCTTGAGCCAACGAGAGATGCAGTGGAAATGGAACGCATGATTGCAGTTACCCCAGGCAACAGTACATTCCTCCTTGA</canonical_amplicon>
		<polymorphic_amplicon>GAGGTTGAATATCGATTAGTGTCCGTACTTTTGGAACTCCCACTCACGGTTATCGAGTGGGCACACCTGAAAATCACCATTTTGAGATCTTGTAGCTTGAAATTTGCTTATTCAAGTATGGCCGATAACAGGTAAACGTGTAAATTTTMGTTTGAAATGCGTACCTGACGTGTCTTGAGCCAACGAGAGATGCAGTGGAAATGGAACGCATGATTGCAGTTACCCCAGGCAACAGTACATTCCTCCTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22518</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>563185</contig_pos>
        <strand>+</strand>
        <context>CAGTAGCTTT[A/C]AAACTTGTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGAAATGTATGAGGAACAACTCAAAGAAATATTTAATAAACAGTAGCTTT</left_flank>
        <right_flank>AAACTTGTAACGGATCGGCCGGGAATTTTTCAGAATTTCCACAGTCCGGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGAGAACTGACGAAGGGAAACAGAAGAAGGATGAAATCTACTATGGTGAAAGGACGACAGAAACTAATCAATAGAAAATAACCTTTTGAGTAAATCAGTTAAGGGGCGTGAGGAAAACCAGTTGGGCATAGAACATCGCTGAGTTCGTAGACACCTTGTGCTCCAGGGAAGGTAAAAAACGATGAAAGGAGTGTATCGATCGTTCGAGAGGAATTCAAAGCTGAATACATTCTGTGAAAGCAACGAAACAGTAATGCTAGAAGACCAGCTACTGGGAACGAGGGAATATGGTCCGAGCAATTAGAGCTGGTACACGCGATCACGTAGGGTTTTTCGCGGGCTCGCTAGGTCCGCCAATCATAGTCAATTCCAAAGTTTCGAACGTGTTACTCGAACTTTCTGAAATTCCGCTCCAAAATGGCGAGCCAAATATTTCAAAACGCAGTTGCGAAATGTATGAGGAACAACTCAAAGAAATATTTAATAAACAGTAGCTTTCAAACTTGTAACGGATCGGCCGGGAATTTTTCAGAATTTCCACAGTCCGGCTCGGGATTCCAGTATTTTTTTAATCTTTCAACAACAGTTAGGTGCCAAAAAAATATAAGCCAAATTTCTACCAAATTAAAAATTTGCAAAGAACGGAGTTTCATTGAAAAAATATTGCTTTCACAAAAAAAATAATACTTTCTGAAATTTCAGATTTTTTTCAAATTTGAAAGCCCGTGCCGGGCACCGATTTTTCAAGTATGAGTTCTTTCAGTCTAGCAGCACAATGAAGTAAGGAACTAAGTTTGAAGAATATTTCAAAGCTTTTTTCAAAAAAAGAGCAAAATTGGACTGAGGAAACATATGATGAGGAAGCTGAAAACGAGTGGCGTTCTCGTCATCAAAAAATAAATTTTTGGTGCATACATCACAACGTACGCGCAATTGCGGACACTTGAATTTTGTTTTTTTTCTTTTATTTTCCGGTCTGCTGAATTTTTTCTTTCCCTC</canonical>
            <polymorphic>CGGAGAACTGACGAAGGGAAACAGAAGAAGGATGAAATCTACTATGGTGAAAGGACGACAGAAACTAATCAATAGAAAATAACCTTTTGAGTAAATCAGTTAAGGGGCGTGAGGAAAACCAGTTGGGCATAGAACATCGCTGAGTTCGTAGACACCTTGTGCTCCAGGGAAGGTAAAAAACGATGAAAGGAGTGTATCGATCGTTCGAGAGGAATTCAAAGCTGAATACATTCTGTGAAAGCAACGAAACAGTAATGCTAGAAGACCAGCTACTGGGAACGAGGGAATATGGTCCGAGCAATTAGAGCTGGTACACGCGATCACGTAGGGTTTTTCGCGGGCTCGCTAGGTCCGCCAATCATAGTCAATTCCAAAGTTTCGAACGTGTTACTCGAACTTTCTGAAATTCCGCTCCAAAATGGCGAGCCAAATATTTCAAAACGCAGTTGCGAAATGTATGAGGAACAACTCAAAGAAATATTTAATAAACAGTAGCTTTMAAACTTGTAACGGATCGGCCGGGAATTTTTCAGAATTTCCACAGTCCGGCTCGGGATTCCAGTATTTTTTTAATCTTTCAACAACAGTTAGGTGCCAAAAAAATATAAGCCAAATTTCTACCAAATTAAAAATTTGCAAAGAACGGAGTTTCATTGAAAAAATATTGCTTTCACAAAAAAAATAATACTTTCTGAAATTTCAGATTTTTTTCAAATTTGAAAGCCCGTGCCGGGCACCGATTTTTCAAGTATGAGTTCTTTCAGTCTAGCAGCACAATGAAGTAAGGAACTAAGTTTGAAGAATATTTCAAAGCTTTTTTCAAAAAAAGAGCAAAATTGGACTGAGGAAACATATGATGAGGAAGCTGAAAACGAGTGGCGTTCTCGTCATCAAAAAATAAATTTTTGGTGCATACATCACAACGTACGCGCAATTGCGGACACTTGAATTTTGTTTTTTTTCTTTTATTTTCCGGTCTGCTGAATTTTTTCTTTCCCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATCATAGTCAATTCCAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>CACCTAACTGTTGTTGAAAGATT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CAATCATAGTCAATTCCAAAGTTTCGAACGTGTTACTCGAACTTTCTGAAATTCCGCTCCAAAATGGCGAGCCAAATATTTCAAAACGCAGTTGCGAAATGTATGAGGAACAACTCAAAGAAATATTTAATAAACAGTAGCTTTCAAACTTGTAACGGATCGGCCGGGAATTTTTCAGAATTTCCACAGTCCGGCTCGGGATTCCAGTATTTTTTTAATCTTTCAACAACAGTTAGGTG</canonical_amplicon>
		<polymorphic_amplicon>CAATCATAGTCAATTCCAAAGTTTCGAACGTGTTACTCGAACTTTCTGAAATTCCGCTCCAAAATGGCGAGCCAAATATTTCAAAACGCAGTTGCGAAATGTATGAGGAACAACTCAAAGAAATATTTAATAAACAGTAGCTTTMAAACTTGTAACGGATCGGCCGGGAATTTTTCAGAATTTCCACAGTCCGGCTCGGGATTCCAGTATTTTTTTAATCTTTCAACAACAGTTAGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22519</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>563507</contig_pos>
        <strand>+</strand>
        <context>AGCTTTTTTC[A/G]AAAAAAGAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCACAATGAAGTAAGGAACTAAGTTTGAAGAATATTTCAAAGCTTTTTTC</left_flank>
        <right_flank>AAAAAAGAGCAAAATTGGACTGAGGAAACATATGATGAGGAAGCTGAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGTAGGGTTTTTCGCGGGCTCGCTAGGTCCGCCAATCATAGTCAATTCCAAAGTTTCGAACGTGTTACTCGAACTTTCTGAAATTCCGCTCCAAAATGGCGAGCCAAATATTTCAAAACGCAGTTGCGAAATGTATGAGGAACAACTCAAAGAAATATTTAATAAACAGTAGCTTTCAAACTTGTAACGGATCGGCCGGGAATTTTTCAGAATTTCCACAGTCCGGCTCGGGATTCCAGTATTTTTTTAATCTTTCAACAACAGTTAGGTGCCAAAAAAATATAAGCCAAATTTCTACCAAATTAAAAATTTGCAAAGAACGGAGTTTCATTGAAAAAATATTGCTTTCACAAAAAAAATAATACTTTCTGAAATTTCAGATTTTTTTCAAATTTGAAAGCCCGTGCCGGGCACCGATTTTTCAAGTATGAGTTCTTTCAGTCTAGCAGCACAATGAAGTAAGGAACTAAGTTTGAAGAATATTTCAAAGCTTTTTTCAAAAAAAGAGCAAAATTGGACTGAGGAAACATATGATGAGGAAGCTGAAAACGAGTGGCGTTCTCGTCATCAAAAAATAAATTTTTGGTGCATACATCACAACGTACGCGCAATTGCGGACACTTGAATTTTGTTTTTTTTCTTTTATTTTCCGGTCTGCTGAATTTTTTCTTTCCCTCCCGTTTCCGTCTTCTATTCATGATAAGCCTTACAGTGAAAATTCGAAAACATTAACAAGAAAACGTTCAGACTTTATTATAAAACCGAAATTATATGTCTTGAGAGAGAAGCACCAGTATGAAGAAAGCAACACGCTATCAGAAAAGAATAATTGAATTTATCAGTCGGCATCAGTGTATCCTATCCTCTTCTTTTTCCGTTCCGGAAAGCATTTTTCGGTGACTTCTCTCAATTTTTGTCCCAAACTCTTGCGGTAGTCAATGACCATCGTTTCATCTATGCTTCCATCTTCCTGCTCATGGTGACTTCTAATGTGCTTGA</canonical>
            <polymorphic>ACGTAGGGTTTTTCGCGGGCTCGCTAGGTCCGCCAATCATAGTCAATTCCAAAGTTTCGAACGTGTTACTCGAACTTTCTGAAATTCCGCTCCAAAATGGCGAGCCAAATATTTCAAAACGCAGTTGCGAAATGTATGAGGAACAACTCAAAGAAATATTTAATAAACAGTAGCTTTCAAACTTGTAACGGATCGGCCGGGAATTTTTCAGAATTTCCACAGTCCGGCTCGGGATTCCAGTATTTTTTTAATCTTTCAACAACAGTTAGGTGCCAAAAAAATATAAGCCAAATTTCTACCAAATTAAAAATTTGCAAAGAACGGAGTTTCATTGAAAAAATATTGCTTTCACAAAAAAAATAATACTTTCTGAAATTTCAGATTTTTTTCAAATTTGAAAGCCCGTGCCGGGCACCGATTTTTCAAGTATGAGTTCTTTCAGTCTAGCAGCACAATGAAGTAAGGAACTAAGTTTGAAGAATATTTCAAAGCTTTTTTCRAAAAAAGAGCAAAATTGGACTGAGGAAACATATGATGAGGAAGCTGAAAACGAGTGGCGTTCTCGTCATCAAAAAATAAATTTTTGGTGCATACATCACAACGTACGCGCAATTGCGGACACTTGAATTTTGTTTTTTTTCTTTTATTTTCCGGTCTGCTGAATTTTTTCTTTCCCTCCCGTTTCCGTCTTCTATTCATGATAAGCCTTACAGTGAAAATTCGAAAACATTAACAAGAAAACGTTCAGACTTTATTATAAAACCGAAATTATATGTCTTGAGAGAGAAGCACCAGTATGAAGAAAGCAACACGCTATCAGAAAAGAATAATTGAATTTATCAGTCGGCATCAGTGTATCCTATCCTCTTCTTTTTCCGTTCCGGAAAGCATTTTTCGGTGACTTCTCTCAATTTTTGTCCCAAACTCTTGCGGTAGTCAATGACCATCGTTTCATCTATGCTTCCATCTTCCTGCTCATGGTGACTTCTAATGTGCTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATTTTTCAAGTATGAGTTCTT</pcr_primer_p1>
		<pcr_primer_p2>GACCGGAAAATAAAAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CGATTTTTCAAGTATGAGTTCTTTCAGTCTAGCAGCACAATGAAGTAAGGAACTAAGTTTGAAGAATATTTCAAAGCTTTTTTCAAAAAAAGAGCAAAATTGGACTGAGGAAACATATGATGAGGAAGCTGAAAACGAGTGGCGTTCTCGTCATCAAAAAATAAATTTTTGGTGCATACATCACAACGTACGCGCAATTGCGGACACTTGAATTTTGTTTTTTTTCTTTTATTTTCCGGTC</canonical_amplicon>
		<polymorphic_amplicon>CGATTTTTCAAGTATGAGTTCTTTCAGTCTAGCAGCACAATGAAGTAAGGAACTAAGTTTGAAGAATATTTCAAAGCTTTTTTCRAAAAAAGAGCAAAATTGGACTGAGGAAACATATGATGAGGAAGCTGAAAACGAGTGGCGTTCTCGTCATCAAAAAATAAATTTTTGGTGCATACATCACAACGTACGCGCAATTGCGGACACTTGAATTTTGTTTTTTTTCTTTTATTTTCCGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22520</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>564331</contig_pos>
        <strand>+</strand>
        <context>AGATCATAGG[A/G]CTCTGAATCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAGTTGTGATACTGTTGCATTTGTGAATTGTCTGCATAGATCATAGG</left_flank>
        <right_flank>CTCTGAATCTGCATTCCATTCATCTCCGGTGATTCTAATTTCACCCGTCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATAATTGAATTTATCAGTCGGCATCAGTGTATCCTATCCTCTTCTTTTTCCGTTCCGGAAAGCATTTTTCGGTGACTTCTCTCAATTTTTGTCCCAAACTCTTGCGGTAGTCAATGACCATCGTTTCATCTATGCTTCCATCTTCCTGCTCATGGTGACTTCTAATGTGCTTGATTACATCTGATTTAGCAATAGTCTGCCATTTACGATGGCAGATTCCACACTCGTAGAGCTCATACTTTCCATGGCGCGTGTTGGCATGATAGACCATACTTGATCGTTGCTTTGAGACCACATCTCCGCACATCGTGCATCGTATCTGCTGCTTCGGCTTCACAGGTCCACCACCGTCCCCATTCGATAGACCAGCTCTTTCTTCCTCGTGTCGCGATAGAGTCTCATCTAAAATGGGCTGATAAGTGTTGTTCTAAGCATAATGGTTTACCTAAAAAGTTGTGATACTGTTGCATTTGTGAATTGTCTGCATAGATCATAGGGCTCTGAATCTGCATTCCATTCATCTCCGGTGATTCTAATTTCACCCGTCCTTCCATGGTACTCGAAACGGTGTCTTGAATTCTTCCATCACTCAGTGGAGAACTAATCATACCGATACATGCCTGCATCTTTTGTGCTAATTCCTTCTTCTTCATAGCGAATTCGTCAGTGTATCGATACTTGATCTGAAATCAGGAACCCTTTTGTCAATCCATTCATCCCATGTTTTCATAACTTACGAAGAACTCGGAAGCTCCATGATCTACTCGACAGTGTGTGACAAGAGCGTATTCGGTTGGAAACTTGGCAAACTTGCATTTCTCGCATCTGAGAGATTATCAGTTTACCACTAGTTGAAATTGGGAAGACACTTACTCGTATGGGAAGATGTTGAGATGATTTGAAGCGATGTGAGCTTCTAGATCATCTTTAGTGTAAGCTTCAGACTGAGGGCATTGGACGCATAGGAAAACGCGGTTATCCATTTGGAAAATGGTTGG</canonical>
            <polymorphic>GAATAATTGAATTTATCAGTCGGCATCAGTGTATCCTATCCTCTTCTTTTTCCGTTCCGGAAAGCATTTTTCGGTGACTTCTCTCAATTTTTGTCCCAAACTCTTGCGGTAGTCAATGACCATCGTTTCATCTATGCTTCCATCTTCCTGCTCATGGTGACTTCTAATGTGCTTGATTACATCTGATTTAGCAATAGTCTGCCATTTACGATGGCAGATTCCACACTCGTAGAGCTCATACTTTCCATGGCGCGTGTTGGCATGATAGACCATACTTGATCGTTGCTTTGAGACCACATCTCCGCACATCGTGCATCGTATCTGCTGCTTCGGCTTCACAGGTCCACCACCGTCCCCATTCGATAGACCAGCTCTTTCTTCCTCGTGTCGCGATAGAGTCTCATCTAAAATGGGCTGATAAGTGTTGTTCTAAGCATAATGGTTTACCTAAAAAGTTGTGATACTGTTGCATTTGTGAATTGTCTGCATAGATCATAGGRCTCTGAATCTGCATTCCATTCATCTCCGGTGATTCTAATTTCACCCGTCCTTCCATGGTACTCGAAACGGTGTCTTGAATTCTTCCATCACTCAGTGGAGAACTAATCATACCGATACATGCCTGCATCTTTTGTGCTAATTCCTTCTTCTTCATAGCGAATTCGTCAGTGTATCGATACTTGATCTGAAATCAGGAACCCTTTTGTCAATCCATTCATCCCATGTTTTCATAACTTACGAAGAACTCGGAAGCTCCATGATCTACTCGACAGTGTGTGACAAGAGCGTATTCGGTTGGAAACTTGGCAAACTTGCATTTCTCGCATCTGAGAGATTATCAGTTTACCACTAGTTGAAATTGGGAAGACACTTACTCGTATGGGAAGATGTTGAGATGATTTGAAGCGATGTGAGCTTCTAGATCATCTTTAGTGTAAGCTTCAGACTGAGGGCATTGGACGCATAGGAAAACGCGGTTATCCATTTGGAAAATGGTTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>498 266 236</canonical_bands>
                <polymorphic_bands>764 236</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>498 266 236</canonical_bands>
                <polymorphic_bands>764 236</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>253 234 162 99 86 61 43 38 24</canonical_bands>
                <polymorphic_bands>339 234 162 99 61 43 38 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTAAAATGGGCTGATAAGTGT</pcr_primer_p1>
		<pcr_primer_p2>AAGAAGGAATTAGCACAAAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATCTAAAATGGGCTGATAAGTGTTGTTCTAAGCATAATGGTTTACCTAAAAAGTTGTGATACTGTTGCATTTGTGAATTGTCTGCATAGATCATAGGGCTCTGAATCTGCATTCCATTCATCTCCGGTGATTCTAATTTCACCCGTCCTTCCATGGTACTCGAAACGGTGTCTTGAATTCTTCCATCACTCAGTGGAGAACTAATCATACCGATACATGCCTGCATCTTTTGTGCTAATTCCTTCTT</canonical_amplicon>
		<polymorphic_amplicon>ATCTAAAATGGGCTGATAAGTGTTGTTCTAAGCATAATGGTTTACCTAAAAAGTTGTGATACTGTTGCATTTGTGAATTGTCTGCATAGATCATAGGRCTCTGAATCTGCATTCCATTCATCTCCGGTGATTCTAATTTCACCCGTCCTTCCATGGTACTCGAAACGGTGTCTTGAATTCTTCCATCACTCAGTGGAGAACTAATCATACCGATACATGCCTGCATCTTTTGTGCTAATTCCTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22521</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>564265</contig_pos>
        <strand>+</strand>
        <context>GTTGTTCTAA[A/G]CATAATGGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTGTCGCGATAGAGTCTCATCTAAAATGGGCTGATAAGTGTTGTTCTAA</left_flank>
        <right_flank>CATAATGGTTTACCTAAAAAGTTGTGATACTGTTGCATTTGTGAATTGTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACCGAAATTATATGTCTTGAGAGAGAAGCACCAGTATGAAGAAAGCAACACGCTATCAGAAAAGAATAATTGAATTTATCAGTCGGCATCAGTGTATCCTATCCTCTTCTTTTTCCGTTCCGGAAAGCATTTTTCGGTGACTTCTCTCAATTTTTGTCCCAAACTCTTGCGGTAGTCAATGACCATCGTTTCATCTATGCTTCCATCTTCCTGCTCATGGTGACTTCTAATGTGCTTGATTACATCTGATTTAGCAATAGTCTGCCATTTACGATGGCAGATTCCACACTCGTAGAGCTCATACTTTCCATGGCGCGTGTTGGCATGATAGACCATACTTGATCGTTGCTTTGAGACCACATCTCCGCACATCGTGCATCGTATCTGCTGCTTCGGCTTCACAGGTCCACCACCGTCCCCATTCGATAGACCAGCTCTTTCTTCCTCGTGTCGCGATAGAGTCTCATCTAAAATGGGCTGATAAGTGTTGTTCTAAGCATAATGGTTTACCTAAAAAGTTGTGATACTGTTGCATTTGTGAATTGTCTGCATAGATCATAGGGCTCTGAATCTGCATTCCATTCATCTCCGGTGATTCTAATTTCACCCGTCCTTCCATGGTACTCGAAACGGTGTCTTGAATTCTTCCATCACTCAGTGGAGAACTAATCATACCGATACATGCCTGCATCTTTTGTGCTAATTCCTTCTTCTTCATAGCGAATTCGTCAGTGTATCGATACTTGATCTGAAATCAGGAACCCTTTTGTCAATCCATTCATCCCATGTTTTCATAACTTACGAAGAACTCGGAAGCTCCATGATCTACTCGACAGTGTGTGACAAGAGCGTATTCGGTTGGAAACTTGGCAAACTTGCATTTCTCGCATCTGAGAGATTATCAGTTTACCACTAGTTGAAATTGGGAAGACACTTACTCGTATGGGAAGATGTTGAGATGATTTGAAGCGATGTGAGCTTCTAGATCATCTTTAGT</canonical>
            <polymorphic>AAAACCGAAATTATATGTCTTGAGAGAGAAGCACCAGTATGAAGAAAGCAACACGCTATCAGAAAAGAATAATTGAATTTATCAGTCGGCATCAGTGTATCCTATCCTCTTCTTTTTCCGTTCCGGAAAGCATTTTTCGGTGACTTCTCTCAATTTTTGTCCCAAACTCTTGCGGTAGTCAATGACCATCGTTTCATCTATGCTTCCATCTTCCTGCTCATGGTGACTTCTAATGTGCTTGATTACATCTGATTTAGCAATAGTCTGCCATTTACGATGGCAGATTCCACACTCGTAGAGCTCATACTTTCCATGGCGCGTGTTGGCATGATAGACCATACTTGATCGTTGCTTTGAGACCACATCTCCGCACATCGTGCATCGTATCTGCTGCTTCGGCTTCACAGGTCCACCACCGTCCCCATTCGATAGACCAGCTCTTTCTTCCTCGTGTCGCGATAGAGTCTCATCTAAAATGGGCTGATAAGTGTTGTTCTAARCATAATGGTTTACCTAAAAAGTTGTGATACTGTTGCATTTGTGAATTGTCTGCATAGATCATAGGGCTCTGAATCTGCATTCCATTCATCTCCGGTGATTCTAATTTCACCCGTCCTTCCATGGTACTCGAAACGGTGTCTTGAATTCTTCCATCACTCAGTGGAGAACTAATCATACCGATACATGCCTGCATCTTTTGTGCTAATTCCTTCTTCTTCATAGCGAATTCGTCAGTGTATCGATACTTGATCTGAAATCAGGAACCCTTTTGTCAATCCATTCATCCCATGTTTTCATAACTTACGAAGAACTCGGAAGCTCCATGATCTACTCGACAGTGTGTGACAAGAGCGTATTCGGTTGGAAACTTGGCAAACTTGCATTTCTCGCATCTGAGAGATTATCAGTTTACCACTAGTTGAAATTGGGAAGACACTTACTCGTATGGGAAGATGTTGAGATGATTTGAAGCGATGTGAGCTTCTAGATCATCTTTAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>496 237 161 106</canonical_bands>
                <polymorphic_bands>657 237 106</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGATAGACCATACTTGATCGT</pcr_primer_p1>
		<pcr_primer_p2>CCTATGATCTATGCAGACAATTC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CATGATAGACCATACTTGATCGTTGCTTTGAGACCACATCTCCGCACATCGTGCATCGTATCTGCTGCTTCGGCTTCACAGGTCCACCACCGTCCCCATTCGATAGACCAGCTCTTTCTTCCTCGTGTCGCGATAGAGTCTCATCTAAAATGGGCTGATAAGTGTTGTTCTAAGCATAATGGTTTACCTAAAAAGTTGTGATACTGTTGCATTTGTGAATTGTCTGCATAGATCATAGG</canonical_amplicon>
		<polymorphic_amplicon>CATGATAGACCATACTTGATCGTTGCTTTGAGACCACATCTCCGCACATCGTGCATCGTATCTGCTGCTTCGGCTTCACAGGTCCACCACCGTCCCCATTCGATAGACCAGCTCTTTCTTCCTCGTGTCGCGATAGAGTCTCATCTAAAATGGGCTGATAAGTGTTGTTCTAARCATAATGGTTTACCTAAAAAGTTGTGATACTGTTGCATTTGTGAATTGTCTGCATAGATCATAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22522</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>564203</contig_pos>
        <strand></strand>
        <context>GATAGACMMG[C/A]MCTTTCTTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CTGCTGCTTCGGCTTCACAGGTCCACCACCGTCCCCATTCGATAGACCAG</left_flank>
        <right_flank>TCTTTCTTCCTCGTGTCGCGATAGAGTCTCATCTAAAATGGGCTGATAAG</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGATAAGCCTTACAGTGAAAATTCGAAAACATTAACAAGAAAACGTTCAGACTTTATTATAAAACCGAAATTATATGTCTTGAGAGAGAAGCACCAGTATGAAGAAAGCAACACGCTATCAGAAAAGAATAATTGAATTTATCAGTCGGCATCAGTGTATCCTATCCTCTTCTTTTTCCGTTCCGGAAAGCATTTTTCGGTGACTTCTCTCAATTTTTGTCCCAAACTCTTGCGGTAGTCAATGACCATCGTTTCATCTATGCTTCCATCTTCCTGCTCATGGTGACTTCTAATGTGCTTGATTACATCTGATTTAGCAATAGTCTGCCATTTACGATGGCAGATTCCACACTCGTAGAGCTCATACTTTCCATGGCGCGTGTTGGCATGATAGACCATACTTGATCGTTGCTTTGAGACCACATCTCCGCACATCGTGCATCGTATCTGCTGCTTCGGCTTCACAGGTCCACCACCGTCCCCATTCGATAGACCAGCTCTTTCTTCCTCGTGTCGCGATAGAGTCTCATCTAAAATGGGCTGATAAGTGTTGTTCTAAGCATAATGGTTTACCTAAAAAGTTGTGATACTGTTGCATTTGTGAATTGTCTGCATAGATCATAGGGCTCTGAATCTGCATTCCATTCATCTCCGGTGATTCTAATTTCACCCGTCCTTCCATGGTACTCGAAACGGTGTCTTGAATTCTTCCATCACTCAGTGGAGAACTAATCATACCGATACATGCCTGCATCTTTTGTGCTAATTCCTTCTTCTTCATAGCGAATTCGTCAGTGTATCGATACTTGATCTGAAATCAGGAACCCTTTTGTCAATCCATTCATCCCATGTTTTCATAACTTACGAAGAACTCGGAAGCTCCATGATCTACTCGACAGTGTGTGACAAGAGCGTATTCGGTTGGAAACTTGGCAAACTTGCATTTCTCGCATCTGAGAGATTATCAGTTTACCACTAGTTGAAATTGGGAAGACACT</canonical>
            <polymorphic>CATGATAAGCCTTACAGTGAAAATTCGAAAACATTAACAAGAAAACGTTCAGACTTTATTATAAAACCGAAATTATATGTCTTGAGAGAGAAGCACCAGTATGAAGAAAGCAACACGCTATCAGAAAAGAATAATTGAATTTATCAGTCGGCATCAGTGTATCCTATCCTCTTCTTTTTCCGTTCCGGAAAGCATTTTTCGGTGACTTCTCTCAATTTTTGTCCCAAACTCTTGCGGTAGTCAATGACCATCGTTTCATCTATGCTTCCATCTTCCTGCTCATGGTGACTTCTAATGTGCTTGATTACATCTGATTTAGCAATAGTCTGCCATTTACGATGGCAGATTCCACACTCGTAGAGCTCATACTTTCCATGGCGCGTGTTGGCATGATAGACCATACTTGATCGTTGCTTTGAGACCACATCTCCGCACATCGTGCATCGTATCTGCTGCTTCGGCTTCACAGGTCCACCACCGTCCCCATTCGATAGACCAGMTCTTTCTTCCTCGTGTCGCGATAGAGTCTCATCTAAAATGGGCTGATAAGTGTTGTTCTAAGCATAATGGTTTACCTAAAAAGTTGTGATACTGTTGCATTTGTGAATTGTCTGCATAGATCATAGGGCTCTGAATCTGCATTCCATTCATCTCCGGTGATTCTAATTTCACCCGTCCTTCCATGGTACTCGAAACGGTGTCTTGAATTCTTCCATCACTCAGTGGAGAACTAATCATACCGATACATGCCTGCATCTTTTGTGCTAATTCCTTCTTCTTCATAGCGAATTCGTCAGTGTATCGATACTTGATCTGAAATCAGGAACCCTTTTGTCAATCCATTCATCCCATGTTTTCATAACTTACGAAGAACTCGGAAGCTCCATGATCTACTCGACAGTGTGTGACAAGAGCGTATTCGGTTGGAAACTTGGCAAACTTGCATTTCTCGCATCTGAGAGATTATCAGTTTACCACTAGTTGAAATTGGGAAGACACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>382 362 137 119</canonical_bands>
                <polymorphic_bands>519 362 119</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>353 253 119 99 86 43 38 9</canonical_bands>
                <polymorphic_bands>353 253 119 99 86 81 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACACTCGTAGAGCTCATACTTT</pcr_primer_p1>
		<pcr_primer_p2>TGCAACAGTATCACAACTTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACACTCGTAGAGCTCATACTTTCCATGGCGCGTGTTGGCATGATAGACCATACTTGATCGTTGCTTTGAGACCACATCTCCGCACATCGTGCATCGTATCTGCTGCTTCGGCTTCACAGGTCCACCACCGTCCCCATTCGATAGACCAGCTCTTTCTTCCTCGTGTCGCGATAGAGTCTCATCTAAAATGGGCTGATAAGTGTTGTTCTAAGCATAATGGTTTACCTAAAAAGTTGTGATACTGTTGCA</canonical_amplicon>
		<polymorphic_amplicon>CACACTCGTAGAGCTCATACTTTCCATGGCGCGTGTTGGCATGATAGACCATACTTGATCGTTGCTTTGAGACCACATCTCCGCACATCGTGCATCGTATCTGCTGCTTCGGCTTCACAGGTCCACCACCGTCCCCATTCGATAGACCAGMTCTTTCTTCCTCGTGTCGCGATAGAGTCTCATCTAAAATGGGCTGATAAGTGTTGTTCTAAGCATAATGGTTTACCTAAAAAGTTGTGATACTGTTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22523</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>564200</contig_pos>
        <strand></strand>
        <context>TTCGATAGAC[C/A]MGMMCTTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TATCTGCTGCTTCGGCTTCACAGGTCCACCACCGTCCCCATTCGATAGAC</left_flank>
        <right_flank>AGCTCTTTCTTCCTCGTGTCGCGATAGAGTCTCATCTAAAATGGGCTGAT</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCATGATAAGCCTTACAGTGAAAATTCGAAAACATTAACAAGAAAACGTTCAGACTTTATTATAAAACCGAAATTATATGTCTTGAGAGAGAAGCACCAGTATGAAGAAAGCAACACGCTATCAGAAAAGAATAATTGAATTTATCAGTCGGCATCAGTGTATCCTATCCTCTTCTTTTTCCGTTCCGGAAAGCATTTTTCGGTGACTTCTCTCAATTTTTGTCCCAAACTCTTGCGGTAGTCAATGACCATCGTTTCATCTATGCTTCCATCTTCCTGCTCATGGTGACTTCTAATGTGCTTGATTACATCTGATTTAGCAATAGTCTGCCATTTACGATGGCAGATTCCACACTCGTAGAGCTCATACTTTCCATGGCGCGTGTTGGCATGATAGACCATACTTGATCGTTGCTTTGAGACCACATCTCCGCACATCGTGCATCGTATCTGCTGCTTCGGCTTCACAGGTCCACCACCGTCCCCATTCGATAGACCAGCTCTTTCTTCCTCGTGTCGCGATAGAGTCTCATCTAAAATGGGCTGATAAGTGTTGTTCTAAGCATAATGGTTTACCTAAAAAGTTGTGATACTGTTGCATTTGTGAATTGTCTGCATAGATCATAGGGCTCTGAATCTGCATTCCATTCATCTCCGGTGATTCTAATTTCACCCGTCCTTCCATGGTACTCGAAACGGTGTCTTGAATTCTTCCATCACTCAGTGGAGAACTAATCATACCGATACATGCCTGCATCTTTTGTGCTAATTCCTTCTTCTTCATAGCGAATTCGTCAGTGTATCGATACTTGATCTGAAATCAGGAACCCTTTTGTCAATCCATTCATCCCATGTTTTCATAACTTACGAAGAACTCGGAAGCTCCATGATCTACTCGACAGTGTGTGACAAGAGCGTATTCGGTTGGAAACTTGGCAAACTTGCATTTCTCGCATCTGAGAGATTATCAGTTTACCACTAGTTGAAATTGGGAAGAC</canonical>
            <polymorphic>ATTCATGATAAGCCTTACAGTGAAAATTCGAAAACATTAACAAGAAAACGTTCAGACTTTATTATAAAACCGAAATTATATGTCTTGAGAGAGAAGCACCAGTATGAAGAAAGCAACACGCTATCAGAAAAGAATAATTGAATTTATCAGTCGGCATCAGTGTATCCTATCCTCTTCTTTTTCCGTTCCGGAAAGCATTTTTCGGTGACTTCTCTCAATTTTTGTCCCAAACTCTTGCGGTAGTCAATGACCATCGTTTCATCTATGCTTCCATCTTCCTGCTCATGGTGACTTCTAATGTGCTTGATTACATCTGATTTAGCAATAGTCTGCCATTTACGATGGCAGATTCCACACTCGTAGAGCTCATACTTTCCATGGCGCGTGTTGGCATGATAGACCATACTTGATCGTTGCTTTGAGACCACATCTCCGCACATCGTGCATCGTATCTGCTGCTTCGGCTTCACAGGTCCACCACCGTCCCCATTCGATAGACMAGCTCTTTCTTCCTCGTGTCGCGATAGAGTCTCATCTAAAATGGGCTGATAAGTGTTGTTCTAAGCATAATGGTTTACCTAAAAAGTTGTGATACTGTTGCATTTGTGAATTGTCTGCATAGATCATAGGGCTCTGAATCTGCATTCCATTCATCTCCGGTGATTCTAATTTCACCCGTCCTTCCATGGTACTCGAAACGGTGTCTTGAATTCTTCCATCACTCAGTGGAGAACTAATCATACCGATACATGCCTGCATCTTTTGTGCTAATTCCTTCTTCTTCATAGCGAATTCGTCAGTGTATCGATACTTGATCTGAAATCAGGAACCCTTTTGTCAATCCATTCATCCCATGTTTTCATAACTTACGAAGAACTCGGAAGCTCCATGATCTACTCGACAGTGTGTGACAAGAGCGTATTCGGTTGGAAACTTGGCAAACTTGCATTTCTCGCATCTGAGAGATTATCAGTTTACCACTAGTTGAAATTGGGAAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACACTCGTAGAGCTCATACTTT</pcr_primer_p1>
		<pcr_primer_p2>TGCAACAGTATCACAACTTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACACTCGTAGAGCTCATACTTTCCATGGCGCGTGTTGGCATGATAGACCATACTTGATCGTTGCTTTGAGACCACATCTCCGCACATCGTGCATCGTATCTGCTGCTTCGGCTTCACAGGTCCACCACCGTCCCCATTCGATAGACCAGCTCTTTCTTCCTCGTGTCGCGATAGAGTCTCATCTAAAATGGGCTGATAAGTGTTGTTCTAAGCATAATGGTTTACCTAAAAAGTTGTGATACTGTTGCA</canonical_amplicon>
		<polymorphic_amplicon>CACACTCGTAGAGCTCATACTTTCCATGGCGCGTGTTGGCATGATAGACCATACTTGATCGTTGCTTTGAGACCACATCTCCGCACATCGTGCATCGTATCTGCTGCTTCGGCTTCACAGGTCCACCACCGTCCCCATTCGATAGACMAGCTCTTTCTTCCTCGTGTCGCGATAGAGTCTCATCTAAAATGGGCTGATAAGTGTTGTTCTAAGCATAATGGTTTACCTAAAAAGTTGTGATACTGTTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22524</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>567132</contig_pos>
        <strand>+</strand>
        <context>ATCAATTTTC[A/C]GATCGTCACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCACGTTGTGCTGTCAATGACTGGCAGAAATAGCAGCCATCAATTTTC</left_flank>
        <right_flank>GATCGTCACCGTTTTTCCTCTCCCCAACCATCATTCGCCTTCCAACTTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCTTCTAGACTCAATGGATTCCCAGAGTTCTACTTGAAAAATTTGCGATGAATAACAAAGAAATCATGACGTCTCTACCCATCTACTGTCATGTGTACAATACGATTTTTGAAGACGTTGGTGGTTATGAAGAGCAAGGACTTGTTGCAGCATCAGAACCACCGGGTAGTGTCGATGTTTAGAATAAAACTAAAATTTTCAAGTTTTCCAGCACACTTCATGGCAGCACTGGAACTTCTTGATCTGCTCCCTGCATACCTGAAGTTCAAGAAACAATCGTCGGAGAAGTCATCAGATGATTCTACATCGGAAACATCTAAAACTTCTGGAGATGTGATATTCTAGTTATTTATTAGTACAGTATATAGTGTTTTCAGTTCAGTATCTTAATTTTTTGTTTAATTTGTTGTCTGTTACACTCTTTGTTTCATATATAAAAAGTCACATTTTCACGTTGTGCTGTCAATGACTGGCAGAAATAGCAGCCATCAATTTTCAGATCGTCACCGTTTTTCCTCTCCCCAACCATCATTCGCCTTCCAACTTTCTTTCGAAACCTTTCCCCAGCGAAGAGTGGATACTGTAAAACGATAGAGAGATGGGTATCAAGTTCAACGGTTTTTTTCTAGCTTTTAAAATTTTATTTTTTACTCGGTTACTGTAGATCGTATCAAGGTTTTTTAACCGAACTTTGCATGATGACGTTGAAATGCGTTGCTGGGGTTTGGTTTATGGTTTCGTTTTAAGGATATTTCCAGAATTACTGTATTGTTCTGGTAAATGCAAGAAAATCGGAGCAGTGGAAGAGACGGCGGTGGCAGTGGAAAATGGTCCCACAACGATAAATACAGTAACCTGAAGTTTTTTTCGTAATTATTTTCTTGTTTTTCACTGATTTTTGTCGAGTTTTCTATTATTTTTCTCCGAAATAGGTCGGATAATGAACATATTTTAGATTACGGTATTTATCGTTGTGGGACATCCGGCCACGGCCACCG</canonical>
            <polymorphic>CCTCTTCTAGACTCAATGGATTCCCAGAGTTCTACTTGAAAAATTTGCGATGAATAACAAAGAAATCATGACGTCTCTACCCATCTACTGTCATGTGTACAATACGATTTTTGAAGACGTTGGTGGTTATGAAGAGCAAGGACTTGTTGCAGCATCAGAACCACCGGGTAGTGTCGATGTTTAGAATAAAACTAAAATTTTCAAGTTTTCCAGCACACTTCATGGCAGCACTGGAACTTCTTGATCTGCTCCCTGCATACCTGAAGTTCAAGAAACAATCGTCGGAGAAGTCATCAGATGATTCTACATCGGAAACATCTAAAACTTCTGGAGATGTGATATTCTAGTTATTTATTAGTACAGTATATAGTGTTTTCAGTTCAGTATCTTAATTTTTTGTTTAATTTGTTGTCTGTTACACTCTTTGTTTCATATATAAAAAGTCACATTTTCACGTTGTGCTGTCAATGACTGGCAGAAATAGCAGCCATCAATTTTCMGATCGTCACCGTTTTTCCTCTCCCCAACCATCATTCGCCTTCCAACTTTCTTTCGAAACCTTTCCCCAGCGAAGAGTGGATACTGTAAAACGATAGAGAGATGGGTATCAAGTTCAACGGTTTTTTTCTAGCTTTTAAAATTTTATTTTTTACTCGGTTACTGTAGATCGTATCAAGGTTTTTTAACCGAACTTTGCATGATGACGTTGAAATGCGTTGCTGGGGTTTGGTTTATGGTTTCGTTTTAAGGATATTTCCAGAATTACTGTATTGTTCTGGTAAATGCAAGAAAATCGGAGCAGTGGAAGAGACGGCGGTGGCAGTGGAAAATGGTCCCACAACGATAAATACAGTAACCTGAAGTTTTTTTCGTAATTATTTTCTTGTTTTTCACTGATTTTTGTCGAGTTTTCTATTATTTTTCTCCGAAATAGGTCGGATAATGAACATATTTTAGATTACGGTATTTATCGTTGTGGGACATCCGGCCACGGCCACCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTAAAACTTCTGGAGATGTGA</pcr_primer_p1>
		<pcr_primer_p2>AAAGGTTTCGAAAGAAAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATCTAAAACTTCTGGAGATGTGATATTCTAGTTATTTATTAGTACAGTATATAGTGTTTTCAGTTCAGTATCTTAATTTTTTGTTTAATTTGTTGTCTGTTACACTCTTTGTTTCATATATAAAAAGTCACATTTTCACGTTGTGCTGTCAATGACTGGCAGAAATAGCAGCCATCAATTTTCAGATCGTCACCGTTTTTCCTCTCCCCAACCATCATTCGCCTTCCAACTTTCTTTCGAAACCTTT</canonical_amplicon>
		<polymorphic_amplicon>ATCTAAAACTTCTGGAGATGTGATATTCTAGTTATTTATTAGTACAGTATATAGTGTTTTCAGTTCAGTATCTTAATTTTTTGTTTAATTTGTTGTCTGTTACACTCTTTGTTTCATATATAAAAAGTCACATTTTCACGTTGTGCTGTCAATGACTGGCAGAAATAGCAGCCATCAATTTTCMGATCGTCACCGTTTTTCCTCTCCCCAACCATCATTCGCCTTCCAACTTTCTTTCGAAACCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22525</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>567014</contig_pos>
        <strand>+</strand>
        <context>GTTTTCAGTT[C/T]AGTATCTTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGATGTGATATTCTAGTTATTTATTAGTACAGTATATAGTGTTTTCAGTT</left_flank>
        <right_flank>AGTATCTTAATTTTTTGTTTAATTTGTTGTCTGTTACACTCTTTGTTTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGACAGAATCTATTGGAGAAGGTTGATGGAAGTCGATGGAGCTCCAGAATTGATCAGTGCTGGAAGCAGAGTACCTGAATTTGTGAGCCTCATAATATTCATTCCCTTCATATTTCCCTCTTCTAGACTCAATGGATTCCCAGAGTTCTACTTGAAAAATTTGCGATGAATAACAAAGAAATCATGACGTCTCTACCCATCTACTGTCATGTGTACAATACGATTTTTGAAGACGTTGGTGGTTATGAAGAGCAAGGACTTGTTGCAGCATCAGAACCACCGGGTAGTGTCGATGTTTAGAATAAAACTAAAATTTTCAAGTTTTCCAGCACACTTCATGGCAGCACTGGAACTTCTTGATCTGCTCCCTGCATACCTGAAGTTCAAGAAACAATCGTCGGAGAAGTCATCAGATGATTCTACATCGGAAACATCTAAAACTTCTGGAGATGTGATATTCTAGTTATTTATTAGTACAGTATATAGTGTTTTCAGTTCAGTATCTTAATTTTTTGTTTAATTTGTTGTCTGTTACACTCTTTGTTTCATATATAAAAAGTCACATTTTCACGTTGTGCTGTCAATGACTGGCAGAAATAGCAGCCATCAATTTTCAGATCGTCACCGTTTTTCCTCTCCCCAACCATCATTCGCCTTCCAACTTTCTTTCGAAACCTTTCCCCAGCGAAGAGTGGATACTGTAAAACGATAGAGAGATGGGTATCAAGTTCAACGGTTTTTTTCTAGCTTTTAAAATTTTATTTTTTACTCGGTTACTGTAGATCGTATCAAGGTTTTTTAACCGAACTTTGCATGATGACGTTGAAATGCGTTGCTGGGGTTTGGTTTATGGTTTCGTTTTAAGGATATTTCCAGAATTACTGTATTGTTCTGGTAAATGCAAGAAAATCGGAGCAGTGGAAGAGACGGCGGTGGCAGTGGAAAATGGTCCCACAACGATAAATACAGTAACCTGAAGTTTTTTTCGTAATTATTTT</canonical>
            <polymorphic>GGAGACAGAATCTATTGGAGAAGGTTGATGGAAGTCGATGGAGCTCCAGAATTGATCAGTGCTGGAAGCAGAGTACCTGAATTTGTGAGCCTCATAATATTCATTCCCTTCATATTTCCCTCTTCTAGACTCAATGGATTCCCAGAGTTCTACTTGAAAAATTTGCGATGAATAACAAAGAAATCATGACGTCTCTACCCATCTACTGTCATGTGTACAATACGATTTTTGAAGACGTTGGTGGTTATGAAGAGCAAGGACTTGTTGCAGCATCAGAACCACCGGGTAGTGTCGATGTTTAGAATAAAACTAAAATTTTCAAGTTTTCCAGCACACTTCATGGCAGCACTGGAACTTCTTGATCTGCTCCCTGCATACCTGAAGTTCAAGAAACAATCGTCGGAGAAGTCATCAGATGATTCTACATCGGAAACATCTAAAACTTCTGGAGATGTGATATTCTAGTTATTTATTAGTACAGTATATAGTGTTTTCAGTTYAGTATCTTAATTTTTTGTTTAATTTGTTGTCTGTTACACTCTTTGTTTCATATATAAAAAGTCACATTTTCACGTTGTGCTGTCAATGACTGGCAGAAATAGCAGCCATCAATTTTCAGATCGTCACCGTTTTTCCTCTCCCCAACCATCATTCGCCTTCCAACTTTCTTTCGAAACCTTTCCCCAGCGAAGAGTGGATACTGTAAAACGATAGAGAGATGGGTATCAAGTTCAACGGTTTTTTTCTAGCTTTTAAAATTTTATTTTTTACTCGGTTACTGTAGATCGTATCAAGGTTTTTTAACCGAACTTTGCATGATGACGTTGAAATGCGTTGCTGGGGTTTGGTTTATGGTTTCGTTTTAAGGATATTTCCAGAATTACTGTATTGTTCTGGTAAATGCAAGAAAATCGGAGCAGTGGAAGAGACGGCGGTGGCAGTGGAAAATGGTCCCACAACGATAAATACAGTAACCTGAAGTTTTTTTCGTAATTATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTAAAACTTCTGGAGATGTGA</pcr_primer_p1>
		<pcr_primer_p2>AAAGGTTTCGAAAGAAAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATCTAAAACTTCTGGAGATGTGATATTCTAGTTATTTATTAGTACAGTATATAGTGTTTTCAGTTCAGTATCTTAATTTTTTGTTTAATTTGTTGTCTGTTACACTCTTTGTTTCATATATAAAAAGTCACATTTTCACGTTGTGCTGTCAATGACTGGCAGAAATAGCAGCCATCAATTTTCAGATCGTCACCGTTTTTCCTCTCCCCAACCATCATTCGCCTTCCAACTTTCTTTCGAAACCTTT</canonical_amplicon>
		<polymorphic_amplicon>ATCTAAAACTTCTGGAGATGTGATATTCTAGTTATTTATTAGTACAGTATATAGTGTTTTCAGTTYAGTATCTTAATTTTTTGTTTAATTTGTTGTCTGTTACACTCTTTGTTTCATATATAAAAAGTCACATTTTCACGTTGTGCTGTCAATGACTGGCAGAAATAGCAGCCATCAATTTTCAGATCGTCACCGTTTTTCCTCTCCCCAACCATCATTCGCCTTCCAACTTTCTTTCGAAACCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22526</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>568748</contig_pos>
        <strand>+</strand>
        <context>GACGGAGAGA[A/T]GAACAGATAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGGTTTCATCGAAGGTATACGGTAGGCTAGGTCAAAGAACGACGGAGAGA</left_flank>
        <right_flank>GAACAGATAGAAATCGAGATGAGAGACTTTGCGAAACAATTCGAAACTTT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCAGAACTGTCTAACAAAACTGAATCTGGAACTGGCGTCTGGAACTCGTCTGAAAAGTCTGCAATTTTTTATTCTCAACACCTTTCTAATTCCACTGAGTTCTCTGGTCAATAGATCAGTCTATCTAACATGTAAAAGTTCTCCTATATCTTCCATCCAAACTCAAAAACAGTTTAATTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAGATGTAACCGGTAGAAAAAGAAAAATAGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAGAAATTAAGGATTCATGAAATTAAGGATTCATGAAATTAAGGATTCGTTGCTAGCTTGCGGTTTCATCGAAGGTATACGGTAGGCTAGGTCAAAGAACGACGGAGAGAAGAACAGATAGAAATCGAGATGAGAGACTTTGCGAAACAATTCGAAACTTTTCTGGGGATTTTTTTTGGAAATTTTCGAAAAGTCAATAAAGTAATTTTAGATTTAGAGACCTGAAAAGCTGCAACGCATACTGTAGGACAGTTTACGGGGGGCCATCAAAGAAGCCGCGGTCATAAGGTTGACGGTAATATAAGAGGGTTACGAGGAAGACGGTAGACCGTTTGATGTCATTTGATGTTTTAATACCGGCTAAAAGTTATATTTTAGAATGTTAATATAAGATTTCTAGCTTATTTTTGAGCAATCAGAATTTTTTCCTGATTAAAAATCAAAAGGATTCAAGGGGAAAAGTTGTAGGTTCTGAAAATGAAAACACAGAAAGATTCCGAAAAAATTCAACTAGCTCTAACCACTTTTGTAGGCCTTATATGGTCTATACCTGTCAACATCTAGAGCACTATGCAAGGATTTTTCCAGGTTCTCAGGATATTCTCACTCTT</canonical>
            <polymorphic>CGCAGAACTGTCTAACAAAACTGAATCTGGAACTGGCGTCTGGAACTCGTCTGAAAAGTCTGCAATTTTTTATTCTCAACACCTTTCTAATTCCACTGAGTTCTCTGGTCAATAGATCAGTCTATCTAACATGTAAAAGTTCTCCTATATCTTCCATCCAAACTCAAAAACAGTTTAATTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAGATGTAACCGGTAGAAAAAGAAAAATAGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAGAAATTAAGGATTCATGAAATTAAGGATTCATGAAATTAAGGATTCGTTGCTAGCTTGCGGTTTCATCGAAGGTATACGGTAGGCTAGGTCAAAGAACGACGGAGAGAWGAACAGATAGAAATCGAGATGAGAGACTTTGCGAAACAATTCGAAACTTTTCTGGGGATTTTTTTTGGAAATTTTCGAAAAGTCAATAAAGTAATTTTAGATTTAGAGACCTGAAAAGCTGCAACGCATACTGTAGGACAGTTTACGGGGGGCCATCAAAGAAGCCGCGGTCATAAGGTTGACGGTAATATAAGAGGGTTACGAGGAAGACGGTAGACCGTTTGATGTCATTTGATGTTTTAATACCGGCTAAAAGTTATATTTTAGAATGTTAATATAAGATTTCTAGCTTATTTTTGAGCAATCAGAATTTTTTCCTGATTAAAAATCAAAAGGATTCAAGGGGAAAAGTTGTAGGTTCTGAAAATGAAAACACAGAAAGATTCCGAAAAAATTCAACTAGCTCTAACCACTTTTGTAGGCCTTATATGGTCTATACCTGTCAACATCTAGAGCACTATGCAAGGATTTTTCCAGGTTCTCAGGATATTCTCACTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAAGAAATTAAGGATTCAAG</pcr_primer_p1>
		<pcr_primer_p2>AGCTTTTCAGGTCTCTAAATCTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGAAGAAATTAAGGATTCAAGAAATTAAGGATTCATGAAATTAAGGATTCATGAAATTAAGGATTCGTTGCTAGCTTGCGGTTTCATCGAAGGTATACGGTAGGCTAGGTCAAAGAACGACGGAGAGAAGAACAGATAGAAATCGAGATGAGAGACTTTGCGAAACAATTCGAAACTTTTCTGGGGATTTTTTTTGGAAATTTTCGAAAAGTCAATAAAGTAATTTTAGATTTAGAGACCTGAAAAGCT</canonical_amplicon>
		<polymorphic_amplicon>TGGAAGAAATTAAGGATTCAAGAAATTAAGGATTCATGAAATTAAGGATTCATGAAATTAAGGATTCGTTGCTAGCTTGCGGTTTCATCGAAGGTATACGGTAGGCTAGGTCAAAGAACGACGGAGAGAWGAACAGATAGAAATCGAGATGAGAGACTTTGCGAAACAATTCGAAACTTTTCTGGGGATTTTTTTTGGAAATTTTCGAAAAGTCAATAAAGTAATTTTAGATTTAGAGACCTGAAAAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22527</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>568844</contig_pos>
        <strand></strand>
        <context>ATAAAGTAAT[T/C]TTAGATTTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACTTTTCTGGGGATTTTTTTTGGAAATTTTCGAAAAGTCAATAAAGTAAT</left_flank>
        <right_flank>TTAGATTTAGAGACCTGAAAAGCTGCAACGCATACTGTAGGACAGTTTAC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGTTCTCTGGTCAATAGATCAGTCTATCTAACATGTAAAAGTTCTCCTATATCTTCCATCCAAACTCAAAAACAGTTTAATTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAGATGTAACCGGTAGAAAAAGAAAAATAGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAGAAATTAAGGATTCATGAAATTAAGGATTCATGAAATTAAGGATTCGTTGCTAGCTTGCGGTTTCATCGAAGGTATACGGTAGGCTAGGTCAAAGAACGACGGAGAGAAGAACAGATAGAAATCGAGATGAGAGACTTTGCGAAACAATTCGAAACTTTTCTGGGGATTTTTTTTGGAAATTTTCGAAAAGTCAATAAAGTAATTTTAGATTTAGAGACCTGAAAAGCTGCAACGCATACTGTAGGACAGTTTACGGGGGGCCATCAAAGAAGCCGCGGTCATAAGGTTGACGGTAATATAAGAGGGTTACGAGGAAGACGGTAGACCGTTTGATGTCATTTGATGTTTTAATACCGGCTAAAAGTTATATTTTAGAATGTTAATATAAGATTTCTAGCTTATTTTTGAGCAATCAGAATTTTTTCCTGATTAAAAATCAAAAGGATTCAAGGGGAAAAGTTGTAGGTTCTGAAAATGAAAACACAGAAAGATTCCGAAAAAATTCAACTAGCTCTAACCACTTTTGTAGGCCTTATATGGTCTATACCTGTCAACATCTAGAGCACTATGCAAGGATTTTTCCAGGTTCTCAGGATATTCTCACTCTTTATTTATTCAAATATCTATTTGATTACACCTGCTCTTAATGGTCCCTTCTGTCGACCAGTTGCGCACTGGGCTGCGTAATGTCGACCTACAGTAAT</canonical>
            <polymorphic>TGAGTTCTCTGGTCAATAGATCAGTCTATCTAACATGTAAAAGTTCTCCTATATCTTCCATCCAAACTCAAAAACAGTTTAATTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAGATGTAACCGGTAGAAAAAGAAAAATAGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAGAAATTAAGGATTCATGAAATTAAGGATTCATGAAATTAAGGATTCGTTGCTAGCTTGCGGTTTCATCGAAGGTATACGGTAGGCTAGGTCAAAGAACGACGGAGAGAAGAACAGATAGAAATCGAGATGAGAGACTTTGCGAAACAATTCGAAACTTTTCTGGGGATTTTTTTTGGAAATTTTCGAAAAGTCAATAAAGTAATYTTAGATTTAGAGACCTGAAAAGCTGCAACGCATACTGTAGGACAGTTTACGGGGGGCCATCAAAGAAGCCGCGGTCATAAGGTTGACGGTAATATAAGAGGGTTACGAGGAAGACGGTAGACCGTTTGATGTCATTTGATGTTTTAATACCGGCTAAAAGTTATATTTTAGAATGTTAATATAAGATTTCTAGCTTATTTTTGAGCAATCAGAATTTTTTCCTGATTAAAAATCAAAAGGATTCAAGGGGAAAAGTTGTAGGTTCTGAAAATGAAAACACAGAAAGATTCCGAAAAAATTCAACTAGCTCTAACCACTTTTGTAGGCCTTATATGGTCTATACCTGTCAACATCTAGAGCACTATGCAAGGATTTTTCCAGGTTCTCAGGATATTCTCACTCTTTATTTATTCAAATATCTATTTGATTACACCTGCTCTTAATGGTCCCTTCTGTCGACCAGTTGCGCACTGGGCTGCGTAATGTCGACCTACAGTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>216 204 112 108 88 84 80 32 23 16 16 16 5</canonical_bands>
                <polymorphic_bands>239 204 112 108 88 84 80 32 16 16 16 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGGTATACGGTAGGCTAGGT</pcr_primer_p1>
		<pcr_primer_p2>CTTCCTCGTAACCCTCTTATATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGGTATACGGTAGGCTAGGTCAAAGAACGACGGAGAGAAGAACAGATAGAAATCGAGATGAGAGACTTTGCGAAACAATTCGAAACTTTTCTGGGGATTTTTTTTGGAAATTTTCGAAAAGTCAATAAAGTAATTTTAGATTTAGAGACCTGAAAAGCTGCAACGCATACTGTAGGACAGTTTACGGGGGGCCATCAAAGAAGCCGCGGTCATAAGGTTGACGGTAATATAAGAGGGTTACGAGGAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAGGTATACGGTAGGCTAGGTCAAAGAACGACGGAGAGAAGAACAGATAGAAATCGAGATGAGAGACTTTGCGAAACAATTCGAAACTTTTCTGGGGATTTTTTTTGGAAATTTTCGAAAAGTCAATAAAGTAATYTTAGATTTAGAGACCTGAAAAGCTGCAACGCATACTGTAGGACAGTTTACGGGGGGCCATCAAAGAAGCCGCGGTCATAAGGTTGACGGTAATATAAGAGGGTTACGAGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22528</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>570539</contig_pos>
        <strand>+</strand>
        <context>CCCATACTAT[A/T]TCTTTTTGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTAGCAGATCCGTCACACTTCTCTCAATCTCTTCTATCACCCATACTAT</left_flank>
        <right_flank>TCTTTTTGTGGATTCTACCGTCAAAATGAATAGAATCATCACTCTTCTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAAAATTTCTGGAACGCAGTTTTGAGATTTTTAGCCTTAACAGATAACAGACAACCTCTAATATAAGGGCTCCCTAACTTTGAACTTTGAGCCAATTTATCTCGGTTGTTGTCAAAAGCCATATAAATGGGCTCATTGTTAAAAATCAGAGGGCTCTCTATTACAGGTTTTCGGGTGTTAAGAAAATGGATGAATATGGTTTTAAAACATGCCATTAAAAATGCTGGTGTGATTATTGTTGCAAATCTTTAGCTGCTAGCTAGACAACCAAATTAAGTGTTGGCAAGGTGATAAGATAAAAGAAGCGTAGCTCTAGAAGTGGTTACCTCAACACTTCTTCTGACTGGGGCCATTCTATCCAATCTTATCTCCCGGCAACTGTTCTTCTGCCCTTCCGATCTACCACCCGACAGAGTATCCTCTTCTTCAAATCACATTGCTCTTCTCACTAGCAGATCCGTCACACTTCTCTCAATCTCTTCTATCACCCATACTATATCTTTTTGTGGATTCTACCGTCAAAATGAATAGAATCATCACTCTTCTCACCATTTTTGGACTTATCGGATGGCTGGAAGCCAGCTTCTCAAACTCACAAATCAAAGAAGCTGCGCAAAAATGCTGCACCCCAAATCGTTACGAATGTTGTATGGATATGATCAAATTTGGGTAAAAACTTTTAATTTCCGGGAACATTGGCAATAGGTCAGATTTCAGAACTCCAATAAAATGTGGATACGAAAGAGATCTCAAAATCCCAGCGCTTGTCTACAATTGCATGCAACAGGAACTATTTGCACAGGAGCCAGAGAAAAGAATGAATCTAGATGGTAAAGATAAAATATAATTTATTAGCAGTAGGAGTTATGGCTCATAAAAACTACAGCTGTTATCTAAAATTTGAATTTCGAAACCATGAATAATATGGTGAGAATAGCGACCGCCCGTCAGTCATTGATTGGTCGGAGGAGGCCGAAACGACCACCCGGACAGGAAAT</canonical>
            <polymorphic>ATCAAAATTTCTGGAACGCAGTTTTGAGATTTTTAGCCTTAACAGATAACAGACAACCTCTAATATAAGGGCTCCCTAACTTTGAACTTTGAGCCAATTTATCTCGGTTGTTGTCAAAAGCCATATAAATGGGCTCATTGTTAAAAATCAGAGGGCTCTCTATTACAGGTTTTCGGGTGTTAAGAAAATGGATGAATATGGTTTTAAAACATGCCATTAAAAATGCTGGTGTGATTATTGTTGCAAATCTTTAGCTGCTAGCTAGACAACCAAATTAAGTGTTGGCAAGGTGATAAGATAAAAGAAGCGTAGCTCTAGAAGTGGTTACCTCAACACTTCTTCTGACTGGGGCCATTCTATCCAATCTTATCTCCCGGCAACTGTTCTTCTGCCCTTCCGATCTACCACCCGACAGAGTATCCTCTTCTTCAAATCACATTGCTCTTCTCACTAGCAGATCCGTCACACTTCTCTCAATCTCTTCTATCACCCATACTATWTCTTTTTGTGGATTCTACCGTCAAAATGAATAGAATCATCACTCTTCTCACCATTTTTGGACTTATCGGATGGCTGGAAGCCAGCTTCTCAAACTCACAAATCAAAGAAGCTGCGCAAAAATGCTGCACCCCAAATCGTTACGAATGTTGTATGGATATGATCAAATTTGGGTAAAAACTTTTAATTTCCGGGAACATTGGCAATAGGTCAGATTTCAGAACTCCAATAAAATGTGGATACGAAAGAGATCTCAAAATCCCAGCGCTTGTCTACAATTGCATGCAACAGGAACTATTTGCACAGGAGCCAGAGAAAAGAATGAATCTAGATGGTAAAGATAAAATATAATTTATTAGCAGTAGGAGTTATGGCTCATAAAAACTACAGCTGTTATCTAAAATTTGAATTTCGAAACCATGAATAATATGGTGAGAATAGCGACCGCCCGTCAGTCATTGATTGGTCGGAGGAGGCCGAAACGACCACCCGGACAGGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGAGTATCCTCTTCTTCAAATC</pcr_primer_p1>
		<pcr_primer_p2>TCATATCCATACAACATTCGTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACAGAGTATCCTCTTCTTCAAATCACATTGCTCTTCTCACTAGCAGATCCGTCACACTTCTCTCAATCTCTTCTATCACCCATACTATATCTTTTTGTGGATTCTACCGTCAAAATGAATAGAATCATCACTCTTCTCACCATTTTTGGACTTATCGGATGGCTGGAAGCCAGCTTCTCAAACTCACAAATCAAAGAAGCTGCGCAAAAATGCTGCACCCCAAATCGTTACGAATGTTGTATGGATATGA</canonical_amplicon>
		<polymorphic_amplicon>ACAGAGTATCCTCTTCTTCAAATCACATTGCTCTTCTCACTAGCAGATCCGTCACACTTCTCTCAATCTCTTCTATCACCCATACTATWTCTTTTTGTGGATTCTACCGTCAAAATGAATAGAATCATCACTCTTCTCACCATTTTTGGACTTATCGGATGGCTGGAAGCCAGCTTCTCAAACTCACAAATCAAAGAAGCTGCGCAAAAATGCTGCACCCCAAATCGTTACGAATGTTGTATGGATATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22529</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>631020</contig_pos>
        <strand>+</strand>
        <context>TACGTCATGT[A/T]CATATCCGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCTGATTTAACCTTTGGTCATTTTTGATGCGATTCTGTCTACGTCATGT</left_flank>
        <right_flank>CATATCCGAAGTTGTTAACACCTGAACCGTAGGGTCAATTGTCTACTACC</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCACATTTATCCGGACTTAAGTTTGGGCCTGCATAAAATTTGTGTACAGCGTTGTGTTAAGCTCAAATTTCGATAGCTAAAATTCAGATAATTCATCTGTAAATTGGCAAAGTTTCAAACTATTTGATCAACTTTGAGCTGAGCTATCGCTTGTAAAAGTTGTTTCATCTCATGCCGTACATAACGCCGTTCATCTTTGAACAACCATAACAAAACCTAGACTTGAGAGATAACTTTGAAAATTTCAGCTACTTTGAATCAAACTTGAAATTAGATATCTACCAGTTTTCTTGCTTCCAAGATGTTTATGTCTGAAGATACACCCGTTTTATCAGTCCGAGTAATTGTGCGCTGCCCTGTAGACCAAGATGCACACTACTCACAATCTGATTTCTGATTTGATCAGCTAAACAGTAACATCTCGATCTTGTCATTTCAAAAAATCTTCTTCTGATTTAACCTTTGGTCATTTTTGATGCGATTCTGTCTACGTCATGTACATATCCGAAGTTGTTAACACCTGAACCGTAGGGTCAATTGTCTACTACCTAAAGACATTGTTTATTGGATGATTGTAAATTTCAATGAGTCATCTCAAAAAAATTGAAAATGTATATTTAGAAGAAGAGAGATAGACATACACAGAGTGCGCAAAAACGAGTTTCTCGACCGAATGAAGATAGGAAGAAGAAGAAGAAAAAGAAGACGTTGCCCTCCCGTGTCTTTTTTCCCGAGACGACAACCCCTGCGACCGACCGACCGACGGCATTTTGTTGTAACATTGATTGAATACAAACTCTTGACATCATGGTCACTTGTCTTTACCTTTTCTTACTCTTCATGTGACTCTTTTTTCAATCCTTTTTGGTTTTTAAAAGATTTCCAACCTATAGAATGTCGTCGTCTGCTATTTCGGATCAGATGGATGTGGAGTCGTCTTCAGCATTCTCTCCAGCTGAGCCAGTTGTTGATGGAGCATTTGTTTCAAAACATAACTTG</canonical>
            <polymorphic>GGCACATTTATCCGGACTTAAGTTTGGGCCTGCATAAAATTTGTGTACAGCGTTGTGTTAAGCTCAAATTTCGATAGCTAAAATTCAGATAATTCATCTGTAAATTGGCAAAGTTTCAAACTATTTGATCAACTTTGAGCTGAGCTATCGCTTGTAAAAGTTGTTTCATCTCATGCCGTACATAACGCCGTTCATCTTTGAACAACCATAACAAAACCTAGACTTGAGAGATAACTTTGAAAATTTCAGCTACTTTGAATCAAACTTGAAATTAGATATCTACCAGTTTTCTTGCTTCCAAGATGTTTATGTCTGAAGATACACCCGTTTTATCAGTCCGAGTAATTGTGCGCTGCCCTGTAGACCAAGATGCACACTACTCACAATCTGATTTCTGATTTGATCAGCTAAACAGTAACATCTCGATCTTGTCATTTCAAAAAATCTTCTTCTGATTTAACCTTTGGTCATTTTTGATGCGATTCTGTCTACGTCATGTWCATATCCGAAGTTGTTAACACCTGAACCGTAGGGTCAATTGTCTACTACCTAAAGACATTGTTTATTGGATGATTGTAAATTTCAATGAGTCATCTCAAAAAAATTGAAAATGTATATTTAGAAGAAGAGAGATAGACATACACAGAGTGCGCAAAAACGAGTTTCTCGACCGAATGAAGATAGGAAGAAGAAGAAGAAAAAGAAGACGTTGCCCTCCCGTGTCTTTTTTCCCGAGACGACAACCCCTGCGACCGACCGACCGACGGCATTTTGTTGTAACATTGATTGAATACAAACTCTTGACATCATGGTCACTTGTCTTTACCTTTTCTTACTCTTCATGTGACTCTTTTTTCAATCCTTTTTGGTTTTTAAAAGATTTCCAACCTATAGAATGTCGTCGTCTGCTATTTCGGATCAGATGGATGTGGAGTCGTCTTCAGCATTCTCTCCAGCTGAGCCAGTTGTTGATGGAGCATTTGTTTCAAAACATAACTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGTACA</site>
                <isoschizomers>
                    <enzyme>AauI</enzyme>
                    <enzyme>Bsp1407I</enzyme>
                    <enzyme>BsrGI</enzyme>
                    <enzyme>SspBI</enzyme>
                </isoschizomers>
                <canonical_bands>503 453 44</canonical_bands>
                <polymorphic_bands>956 44</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 320 133 46</canonical_bands>
                <polymorphic_bands>821 133 46</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>503 453 44</canonical_bands>
                <polymorphic_bands>956 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATCAGCTAAACAGTAACATCTC</pcr_primer_p1>
		<pcr_primer_p2>GCACTCTGTGTATGTCTATCTCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGATCAGCTAAACAGTAACATCTCGATCTTGTCATTTCAAAAAATCTTCTTCTGATTTAACCTTTGGTCATTTTTGATGCGATTCTGTCTACGTCATGTACATATCCGAAGTTGTTAACACCTGAACCGTAGGGTCAATTGTCTACTACCTAAAGACATTGTTTATTGGATGATTGTAAATTTCAATGAGTCATCTCAAAAAAATTGAAAATGTATATTTAGAAGAAGAGAGATAGACATACACAGAGTGC</canonical_amplicon>
		<polymorphic_amplicon>TGATCAGCTAAACAGTAACATCTCGATCTTGTCATTTCAAAAAATCTTCTTCTGATTTAACCTTTGGTCATTTTTGATGCGATTCTGTCTACGTCATGTWCATATCCGAAGTTGTTAACACCTGAACCGTAGGGTCAATTGTCTACTACCTAAAGACATTGTTTATTGGATGATTGTAAATTTCAATGAGTCATCTCAAAAAAATTGAAAATGTATATTTAGAAGAAGAGAGATAGACATACACAGAGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22530</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>632109</contig_pos>
        <strand>+</strand>
        <context>TAGAAGGGTC[A/T]ATACAggtcc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTGCTATAATTCATTGAAATATACCGTAAATCCTGTTATAGAAGGGTC</left_flank>
        <right_flank>ATACAGGTCCCTGTCAAACATATAAAAAAGTTGTCAACTGATAAATTGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTCCGGAAAAGTTGCTCAGCCAGAGCAGCTAGCATTCATTCAGAGAACACTTCAAATTTGTGAGAACGTGATTCTGAATTTTGAAGACGAGAAACAACATTTGATGAGTGATGTTCTTTTGGTGTGGGCGATGAAACAACAAAAACTAAGTATTGCAACCCTTCACACCCAACAGTTGCACTATAAAGAACTGGATCTGATCAATTTGCAATTCGAGTATTTCGGAGAACTCCTCCAACAAACTTTATCTGGATTGGATTATTTGAAACAATATTATCCGAATGTTGGATTTGAAGAGGTCCATTCGAAAGTCAGAAATCTCACACATTATTTTCTGTACTATTCTATTATTGTCAGTCGCCAGCCACCGTCGGTAATTGTTAAATGTGGAGAAGCAGAGAATCATAGAAGATCTAGATTCTGGTTTAACACTGAAATCAGGTAATTTTTTGCTATAATTCATTGAAATATACCGTAAATCCTGTTATAGAAGGGTCAATACAGGTCCCTGTCAAACATATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAATTGCCTTGTTAGTTGAAAAATTTTGATGTCTCTCATAGGAATCAAGACAATTGAGCTCACAATGTGGAAGCCCTTCTATTACAGGTTTTACCGTAAAACTAATAGTTCAGAATCCTTGGTGGAAGTGCATTCGGAATCGATACCAACAACGAAAATTCAAATGTCAATTGCTATTTGATTACTGATGAAACTGCCAAACAACTTCTGAATAATGCCTACTTGGATATGTAAGATTTCGTTTTGTAAATTTTCATTTTAAATTTCTTTTTTCCGTTTCGAATCAGAAGAGTTCTGCATTGAGCCAAACACAACAACATTCCAGAAGAAAGATGCAAGAGGAATTAAAGCGAAATTCGATGATATGGTATGAGAATCAATAAAAGTGAAAGAAAGATGAGAAATAACAAAAATATTATTTAAGAAAGTTGCAAAAA</canonical>
            <polymorphic>CTCTCCGGAAAAGTTGCTCAGCCAGAGCAGCTAGCATTCATTCAGAGAACACTTCAAATTTGTGAGAACGTGATTCTGAATTTTGAAGACGAGAAACAACATTTGATGAGTGATGTTCTTTTGGTGTGGGCGATGAAACAACAAAAACTAAGTATTGCAACCCTTCACACCCAACAGTTGCACTATAAAGAACTGGATCTGATCAATTTGCAATTCGAGTATTTCGGAGAACTCCTCCAACAAACTTTATCTGGATTGGATTATTTGAAACAATATTATCCGAATGTTGGATTTGAAGAGGTCCATTCGAAAGTCAGAAATCTCACACATTATTTTCTGTACTATTCTATTATTGTCAGTCGCCAGCCACCGTCGGTAATTGTTAAATGTGGAGAAGCAGAGAATCATAGAAGATCTAGATTCTGGTTTAACACTGAAATCAGGTAATTTTTTGCTATAATTCATTGAAATATACCGTAAATCCTGTTATAGAAGGGTCWATACAGGTCCCTGTCAAACATATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAATTGCCTTGTTAGTTGAAAAATTTTGATGTCTCTCATAGGAATCAAGACAATTGAGCTCACAATGTGGAAGCCCTTCTATTACAGGTTTTACCGTAAAACTAATAGTTCAGAATCCTTGGTGGAAGTGCATTCGGAATCGATACCAACAACGAAAATTCAAATGTCAATTGCTATTTGATTACTGATGAAACTGCCAAACAACTTCTGAATAATGCCTACTTGGATATGTAAGATTTCGTTTTGTAAATTTTCATTTTAAATTTCTTTTTTCCGTTTCGAATCAGAAGAGTTCTGCATTGAGCCAAACACAACAACATTCCAGAAGAAAGATGCAAGAGGAATTAAAGCGAAATTCGATGATATGGTATGAGAATCAATAAAAGTGAAAGAAAGATGAGAAATAACAAAAATATTATTTAAGAAAGTTGCAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAACACTGAAATCAGGTAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CCACCAAGGATTCTGAACTAT</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>TTAACACTGAAATCAGGTAATTTTTTGCTATAATTCATTGAAATATACCGTAAATCCTGTTATAGAAGGGTCAATACAGGTCCCTGTCAAACATATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAATTGCCTTGTTAGTTGAAAAATTTTGATGTCTCTCATAGGAATCAAGACAATTGAGCTCACAATGTGGAAGCCCTTCTATTACAGGTTTTACCGTAAAACTAATAGTTCAGAATCCTTGGTGG</canonical_amplicon>
		<polymorphic_amplicon>TTAACACTGAAATCAGGTAATTTTTTGCTATAATTCATTGAAATATACCGTAAATCCTGTTATAGAAGGGTCWATACAGGTCCCTGTCAAACATATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAATTGCCTTGTTAGTTGAAAAATTTTGATGTCTCTCATAGGAATCAAGACAATTGAGCTCACAATGTGGAAGCCCTTCTATTACAGGTTTTACCGTAAAACTAATAGTTCAGAATCCTTGGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22531</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>632385</contig_pos>
        <strand>+</strand>
        <context>AACTTCTGAA[C/T]AATGCCTACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGTCAATTGCTATTTGATTACTGATGAAACTGCCAAACAACTTCTGAA</left_flank>
        <right_flank>AATGCCTACTTGGATATGTAAGATTTCGTTTTGTAAATTTTCATTTTAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCCGAATGTTGGATTTGAAGAGGTCCATTCGAAAGTCAGAAATCTCACACATTATTTTCTGTACTATTCTATTATTGTCAGTCGCCAGCCACCGTCGGTAATTGTTAAATGTGGAGAAGCAGAGAATCATAGAAGATCTAGATTCTGGTTTAACACTGAAATCAGGTAATTTTTTGCTATAATTCATTGAAATATACCGTAAATCCTGTTATAGAAGGGTCAATACAGGTCCCTGTCAAACATATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAATTGCCTTGTTAGTTGAAAAATTTTGATGTCTCTCATAGGAATCAAGACAATTGAGCTCACAATGTGGAAGCCCTTCTATTACAGGTTTTACCGTAAAACTAATAGTTCAGAATCCTTGGTGGAAGTGCATTCGGAATCGATACCAACAACGAAAATTCAAATGTCAATTGCTATTTGATTACTGATGAAACTGCCAAACAACTTCTGAATAATGCCTACTTGGATATGTAAGATTTCGTTTTGTAAATTTTCATTTTAAATTTCTTTTTTCCGTTTCGAATCAGAAGAGTTCTGCATTGAGCCAAACACAACAACATTCCAGAAGAAAGATGCAAGAGGAATTAAAGCGAAATTCGATGATATGGTATGAGAATCAATAAAAGTGAAAGAAAGATGAGAAATAACAAAAATATTATTTAAGAAAGTTGCAAAAAAAGTTCAACTTCGGCGAGACTCTGTTGCAACGAAGCGATATTGTCTTTGCTACAATATTCAGTTGCAAACCAATTGTGGAATCGAGCTGGTTGGAAAGAAAGTGGGTTGAAATTCAATGGAGCATATAATATGGATCTCTCGTTCAGGTATCACTACCATTTGCGGTGTTGGTTGGGCCGAAAGCTGATGTTGAGGCAAAGTTGTTCTTGGAGAGGTCATTTGCAGATTTGGTAAGTTTTTTGAAGCCCTATTTTTACAGACTGGCACCCTGGGTA</canonical>
            <polymorphic>TATCCGAATGTTGGATTTGAAGAGGTCCATTCGAAAGTCAGAAATCTCACACATTATTTTCTGTACTATTCTATTATTGTCAGTCGCCAGCCACCGTCGGTAATTGTTAAATGTGGAGAAGCAGAGAATCATAGAAGATCTAGATTCTGGTTTAACACTGAAATCAGGTAATTTTTTGCTATAATTCATTGAAATATACCGTAAATCCTGTTATAGAAGGGTCAATACAGGTCCCTGTCAAACATATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAATTGCCTTGTTAGTTGAAAAATTTTGATGTCTCTCATAGGAATCAAGACAATTGAGCTCACAATGTGGAAGCCCTTCTATTACAGGTTTTACCGTAAAACTAATAGTTCAGAATCCTTGGTGGAAGTGCATTCGGAATCGATACCAACAACGAAAATTCAAATGTCAATTGCTATTTGATTACTGATGAAACTGCCAAACAACTTCTGAAYAATGCCTACTTGGATATGTAAGATTTCGTTTTGTAAATTTTCATTTTAAATTTCTTTTTTCCGTTTCGAATCAGAAGAGTTCTGCATTGAGCCAAACACAACAACATTCCAGAAGAAAGATGCAAGAGGAATTAAAGCGAAATTCGATGATATGGTATGAGAATCAATAAAAGTGAAAGAAAGATGAGAAATAACAAAAATATTATTTAAGAAAGTTGCAAAAAAAGTTCAACTTCGGCGAGACTCTGTTGCAACGAAGCGATATTGTCTTTGCTACAATATTCAGTTGCAAACCAATTGTGGAATCGAGCTGGTTGGAAAGAAAGTGGGTTGAAATTCAATGGAGCATATAATATGGATCTCTCGTTCAGGTATCACTACCATTTGCGGTGTTGGTTGGGCCGAAAGCTGATGTTGAGGCAAAGTTGTTCTTGGAGAGGTCATTTGCAGATTTGGTAAGTTTTTTGAAGCCCTATTTTTACAGACTGGCACCCTGGGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATACCAACAACGAAAATTCA</pcr_primer_p1>
		<pcr_primer_p2>TCACTTTTATTGATTCTCATACCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATACCAACAACGAAAATTCAAATGTCAATTGCTATTTGATTACTGATGAAACTGCCAAACAACTTCTGAATAATGCCTACTTGGATATGTAAGATTTCGTTTTGTAAATTTTCATTTTAAATTTCTTTTTTCCGTTTCGAATCAGAAGAGTTCTGCATTGAGCCAAACACAACAACATTCCAGAAGAAAGATGCAAGAGGAATTAAAGCGAAATTCGATGATATGGTATGAGAATCAATAAAAGTGA</canonical_amplicon>
		<polymorphic_amplicon>GATACCAACAACGAAAATTCAAATGTCAATTGCTATTTGATTACTGATGAAACTGCCAAACAACTTCTGAAYAATGCCTACTTGGATATGTAAGATTTCGTTTTGTAAATTTTCATTTTAAATTTCTTTTTTCCGTTTCGAATCAGAAGAGTTCTGCATTGAGCCAAACACAACAACATTCCAGAAGAAAGATGCAAGAGGAATTAAAGCGAAATTCGATGATATGGTATGAGAATCAATAAAAGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22532</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>677821</contig_pos>
        <strand></strand>
        <context>GTYGGACACA[T/G]GATTAATGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TCCTACTTTGCTCATAAGTTCTCTCCTGAATTCGATGTAAGTCGGACACA</left_flank>
        <right_flank>GATTAATGGAAAAACTAAACAATAATTTTTATAGGGATGGTATGATCTGT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAATGCAGCACGGATTACTGGCATGTGCAAGTGATTGGGTTGTGAATCTACCCGATCAGAGCGCAGGTATCACTTTTTTTCATGATGTACTGTATTTCTAATGTACGCTTTGTCAGCTTATGTATTCGCGGATGCTGGTTTTGATGTGTGGTTGGGTAACGTTCGTGGAACAACCTACGGAAGAAAACACACAACTCTTGATCCAAAAGAAACTCCATTTTGGCAATTCAGTTGGGATGAAATGGCTCAGTACGATCTGACGGCTATGGTGGACCACGTTTTGGCAATGACTGGACAAGAAAATCTATATTATATGGGACATTCCCAAGGTACACTGATCATGTTCACACGATTGGCAAAAGATACTGATGGCAGCTTTGCAAAGAAGATCAAGAGATATTTCGCATTAGCTCCAATAGGATCTGTAAAGAACATCAAAGGATTCTTATCCTACTTTGCTCATAAGTTCTCTCCTGAATTCGATGTAAGTCGGACACATGATTAATGGAAAAACTAAACAATAATTTTTATAGGGATGGTATGATCTGTTTGGTTCCAAAGATTTCCTTCCTGACAATTGGATTACAAAAGAGGCATCCAAAGACATTTGTGGAAGTTCGGAGAAGGAAGCTGAAATGTGTGATAATGAGTTGTTCCTGATTGCGGGACCAGAAAGTAATCAATGGAATGCATCTAGAACCGCAGTATACAGTTCACAAGATCCAGCTGGAACTTCGACTCAAAACATTGTTCACTGGATGCAGATGGTCCGACACGGAAGAGTTCCTGCATTCGATTGGGGAAAAAAAATCAATAAGAAGAAGTACGGACAGGATACACCACCAGAATACGATTTCAGTGCAATCAAAGGAACAAAAATTCATTTGTATTGGAGTGACGACGACTGGTTGGGAGATCCAACTGATATCCATGATTTCTTGTTGAAAGAGTTGAATCCTGCTGTTATTGCTGAGAATGTTAATTTGAAAAACTTCAATC</canonical>
            <polymorphic>CTAATGCAGCACGGATTACTGGCATGTGCAAGTGATTGGGTTGTGAATCTACCCGATCAGAGCGCAGGTATCACTTTTTTTCATGATGTACTGTATTTCTAATGTACGCTTTGTCAGCTTATGTATTCGCGGATGCTGGTTTTGATGTGTGGTTGGGTAACGTTCGTGGAACAACCTACGGAAGAAAACACACAACTCTTGATCCAAAAGAAACTCCATTTTGGCAATTCAGTTGGGATGAAATGGCTCAGTACGATCTGACGGCTATGGTGGACCACGTTTTGGCAATGACTGGACAAGAAAATCTATATTATATGGGACATTCCCAAGGTACACTGATCATGTTCACACGATTGGCAAAAGATACTGATGGCAGCTTTGCAAAGAAGATCAAGAGATATTTCGCATTAGCTCCAATAGGATCTGTAAAGAACATCAAAGGATTCTTATCCTACTTTGCTCATAAGTTCTCTCCTGAATTCGATGTAAGTCGGACACAKGATTAATGGAAAAACTAAACAATAATTTTTATAGGGATGGTATGATCTGTTTGGTTCCAAAGATTTCCTTCCTGACAATTGGATTACAAAAGAGGCATCCAAAGACATTTGTGGAAGTTCGGAGAAGGAAGCTGAAATGTGTGATAATGAGTTGTTCCTGATTGCGGGACCAGAAAGTAATCAATGGAATGCATCTAGAACCGCAGTATACAGTTCACAAGATCCAGCTGGAACTTCGACTCAAAACATTGTTCACTGGATGCAGATGGTCCGACACGGAAGAGTTCCTGCATTCGATTGGGGAAAAAAAATCAATAAGAAGAAGTACGGACAGGATACACCACCAGAATACGATTTCAGTGCAATCAAAGGAACAAAAATTCATTTGTATTGGAGTGACGACGACTGGTTGGGAGATCCAACTGATATCCATGATTTCTTGTTGAAAGAGTTGAATCCTGCTGTTATTGCTGAGAATGTTAATTTGAAAAACTTCAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>433 259 157 69 59 23</canonical_bands>
                <polymorphic_bands>590 259 69 59 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGCTCCAATAGGATCTGTAAA</pcr_primer_p1>
		<pcr_primer_p2>GGAACAACTCATTATCACACATT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTAGCTCCAATAGGATCTGTAAAGAACATCAAAGGATTCTTATCCTACTTTGCTCATAAGTTCTCTCCTGAATTCGATGTAAGTCGGACACATGATTAATGGAAAAACTAAACAATAATTTTTATAGGGATGGTATGATCTGTTTGGTTCCAAAGATTTCCTTCCTGACAATTGGATTACAAAAGAGGCATCCAAAGACATTTGTGGAAGTTCGGAGAAGGAAGCTGAAATGTGTGATAATGAGTTGTTCC</canonical_amplicon>
		<polymorphic_amplicon>TTAGCTCCAATAGGATCTGTAAAGAACATCAAAGGATTCTTATCCTACTTTGCTCATAAGTTCTCTCCTGAATTCGATGTAAGTCGGACACAKGATTAATGGAAAAACTAAACAATAATTTTTATAGGGATGGTATGATCTGTTTGGTTCCAAAGATTTCCTTCCTGACAATTGGATTACAAAAGAGGCATCCAAAGACATTTGTGGAAGTTCGGAGAAGGAAGCTGAAATGTGTGATAATGAGTTGTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22533</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>677813</contig_pos>
        <strand></strand>
        <context>CGATGTAAGT[C/T]GGACACAKGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTCTTATCCTACTTTGCTCATAAGTTCTCTCCTGAATTCGATGTAAGT</left_flank>
        <right_flank>GGACACATGATTAATGGAAAAACTAAACAATAATTTTTATAGGGATGGTA</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTTGTTCTAATGCAGCACGGATTACTGGCATGTGCAAGTGATTGGGTTGTGAATCTACCCGATCAGAGCGCAGGTATCACTTTTTTTCATGATGTACTGTATTTCTAATGTACGCTTTGTCAGCTTATGTATTCGCGGATGCTGGTTTTGATGTGTGGTTGGGTAACGTTCGTGGAACAACCTACGGAAGAAAACACACAACTCTTGATCCAAAAGAAACTCCATTTTGGCAATTCAGTTGGGATGAAATGGCTCAGTACGATCTGACGGCTATGGTGGACCACGTTTTGGCAATGACTGGACAAGAAAATCTATATTATATGGGACATTCCCAAGGTACACTGATCATGTTCACACGATTGGCAAAAGATACTGATGGCAGCTTTGCAAAGAAGATCAAGAGATATTTCGCATTAGCTCCAATAGGATCTGTAAAGAACATCAAAGGATTCTTATCCTACTTTGCTCATAAGTTCTCTCCTGAATTCGATGTAAGTCGGACACATGATTAATGGAAAAACTAAACAATAATTTTTATAGGGATGGTATGATCTGTTTGGTTCCAAAGATTTCCTTCCTGACAATTGGATTACAAAAGAGGCATCCAAAGACATTTGTGGAAGTTCGGAGAAGGAAGCTGAAATGTGTGATAATGAGTTGTTCCTGATTGCGGGACCAGAAAGTAATCAATGGAATGCATCTAGAACCGCAGTATACAGTTCACAAGATCCAGCTGGAACTTCGACTCAAAACATTGTTCACTGGATGCAGATGGTCCGACACGGAAGAGTTCCTGCATTCGATTGGGGAAAAAAAATCAATAAGAAGAAGTACGGACAGGATACACCACCAGAATACGATTTCAGTGCAATCAAAGGAACAAAAATTCATTTGTATTGGAGTGACGACGACTGGTTGGGAGATCCAACTGATATCCATGATTTCTTGTTGAAAGAGTTGAATCCTGCTGTTATTGCTGAGAATGTTAATTTGAAAAA</canonical>
            <polymorphic>CTGTTGTTCTAATGCAGCACGGATTACTGGCATGTGCAAGTGATTGGGTTGTGAATCTACCCGATCAGAGCGCAGGTATCACTTTTTTTCATGATGTACTGTATTTCTAATGTACGCTTTGTCAGCTTATGTATTCGCGGATGCTGGTTTTGATGTGTGGTTGGGTAACGTTCGTGGAACAACCTACGGAAGAAAACACACAACTCTTGATCCAAAAGAAACTCCATTTTGGCAATTCAGTTGGGATGAAATGGCTCAGTACGATCTGACGGCTATGGTGGACCACGTTTTGGCAATGACTGGACAAGAAAATCTATATTATATGGGACATTCCCAAGGTACACTGATCATGTTCACACGATTGGCAAAAGATACTGATGGCAGCTTTGCAAAGAAGATCAAGAGATATTTCGCATTAGCTCCAATAGGATCTGTAAAGAACATCAAAGGATTCTTATCCTACTTTGCTCATAAGTTCTCTCCTGAATTCGATGTAAGTYGGACACATGATTAATGGAAAAACTAAACAATAATTTTTATAGGGATGGTATGATCTGTTTGGTTCCAAAGATTTCCTTCCTGACAATTGGATTACAAAAGAGGCATCCAAAGACATTTGTGGAAGTTCGGAGAAGGAAGCTGAAATGTGTGATAATGAGTTGTTCCTGATTGCGGGACCAGAAAGTAATCAATGGAATGCATCTAGAACCGCAGTATACAGTTCACAAGATCCAGCTGGAACTTCGACTCAAAACATTGTTCACTGGATGCAGATGGTCCGACACGGAAGAGTTCCTGCATTCGATTGGGGAAAAAAAATCAATAAGAAGAAGTACGGACAGGATACACCACCAGAATACGATTTCAGTGCAATCAAAGGAACAAAAATTCATTTGTATTGGAGTGACGACGACTGGTTGGGAGATCCAACTGATATCCATGATTTCTTGTTGAAAGAGTTGAATCCTGCTGTTATTGCTGAGAATGTTAATTTGAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>234 220 200 151 128 67</canonical_bands>
                <polymorphic_bands>362 220 200 151 67</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGCTCCAATAGGATCTGTAAA</pcr_primer_p1>
		<pcr_primer_p2>GGAACAACTCATTATCACACATT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTAGCTCCAATAGGATCTGTAAAGAACATCAAAGGATTCTTATCCTACTTTGCTCATAAGTTCTCTCCTGAATTCGATGTAAGTCGGACACATGATTAATGGAAAAACTAAACAATAATTTTTATAGGGATGGTATGATCTGTTTGGTTCCAAAGATTTCCTTCCTGACAATTGGATTACAAAAGAGGCATCCAAAGACATTTGTGGAAGTTCGGAGAAGGAAGCTGAAATGTGTGATAATGAGTTGTTCC</canonical_amplicon>
		<polymorphic_amplicon>TTAGCTCCAATAGGATCTGTAAAGAACATCAAAGGATTCTTATCCTACTTTGCTCATAAGTTCTCTCCTGAATTCGATGTAAGTYGGACACATGATTAATGGAAAAACTAAACAATAATTTTTATAGGGATGGTATGATCTGTTTGGTTCCAAAGATTTCCTTCCTGACAATTGGATTACAAAAGAGGCATCCAAAGACATTTGTGGAAGTTCGGAGAAGGAAGCTGAAATGTGTGATAATGAGTTGTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22534</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>677440</contig_pos>
        <strand></strand>
        <context>CTTTGTCAGC[T/C]TATGTATTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TATCACTTTTTTTCATGATGTACTGTATTTCTAATGTACGCTTTGTCAGC</left_flank>
        <right_flank>TATGTATTCGCGGATGCTGGTTTTGATGTGTGGTTGGGTAACGTTCGTGG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAATCACTGTTACAATGAATGATAAGGTGATCGTTTCGAGAAGAACAAAAATGTTGTTCTCGTTACTGATCTCTTCTAAATTCCTAATTTCATCATGTCTTCTCTTTTTATCAGTAGCAGCTCACGAGGATACCGATCCAGAGCTAAACATGAATACGGTAAGGTTTCCGGGATATTATCGAATACAAAAGTTTATAGTCTCAAATCATTGAACGTTGGGGATACAAAGCAGAAGTGCATACTGTAACTACCGAAGATGGATACATTTTGGAAATGCAAAGGATTCCAAACGGAAAAAGTTTGTATTTTAATTTATATCCTTTAGAACAATAGAGATTTAGAGAGTGTATCCTGGCCGAATGGAAAGAAACCTGTTGTTCTAATGCAGCACGGATTACTGGCATGTGCAAGTGATTGGGTTGTGAATCTACCCGATCAGAGCGCAGGTATCACTTTTTTTCATGATGTACTGTATTTCTAATGTACGCTTTGTCAGCTTATGTATTCGCGGATGCTGGTTTTGATGTGTGGTTGGGTAACGTTCGTGGAACAACCTACGGAAGAAAACACACAACTCTTGATCCAAAAGAAACTCCATTTTGGCAATTCAGTTGGGATGAAATGGCTCAGTACGATCTGACGGCTATGGTGGACCACGTTTTGGCAATGACTGGACAAGAAAATCTATATTATATGGGACATTCCCAAGGTACACTGATCATGTTCACACGATTGGCAAAAGATACTGATGGCAGCTTTGCAAAGAAGATCAAGAGATATTTCGCATTAGCTCCAATAGGATCTGTAAAGAACATCAAAGGATTCTTATCCTACTTTGCTCATAAGTTCTCTCCTGAATTCGATGTAAGTCGGACACATGATTAATGGAAAAACTAAACAATAATTTTTATAGGGATGGTATGATCTGTTTGGTTCCAAAGATTTCCTTCCTGACAATTGGATTACAAAAGAGGCATCCAAAGACATTTGTGGAAGTT</canonical>
            <polymorphic>TAAAATCACTGTTACAATGAATGATAAGGTGATCGTTTCGAGAAGAACAAAAATGTTGTTCTCGTTACTGATCTCTTCTAAATTCCTAATTTCATCATGTCTTCTCTTTTTATCAGTAGCAGCTCACGAGGATACCGATCCAGAGCTAAACATGAATACGGTAAGGTTTCCGGGATATTATCGAATACAAAAGTTTATAGTCTCAAATCATTGAACGTTGGGGATACAAAGCAGAAGTGCATACTGTAACTACCGAAGATGGATACATTTTGGAAATGCAAAGGATTCCAAACGGAAAAAGTTTGTATTTTAATTTATATCCTTTAGAACAATAGAGATTTAGAGAGTGTATCCTGGCCGAATGGAAAGAAACCTGTTGTTCTAATGCAGCACGGATTACTGGCATGTGCAAGTGATTGGGTTGTGAATCTACCCGATCAGAGCGCAGGTATCACTTTTTTTCATGATGTACTGTATTTCTAATGTACGCTTTGTCAGCYTATGTATTCGCGGATGCTGGTTTTGATGTGTGGTTGGGTAACGTTCGTGGAACAACCTACGGAAGAAAACACACAACTCTTGATCCAAAAGAAACTCCATTTTGGCAATTCAGTTGGGATGAAATGGCTCAGTACGATCTGACGGCTATGGTGGACCACGTTTTGGCAATGACTGGACAAGAAAATCTATATTATATGGGACATTCCCAAGGTACACTGATCATGTTCACACGATTGGCAAAAGATACTGATGGCAGCTTTGCAAAGAAGATCAAGAGATATTTCGCATTAGCTCCAATAGGATCTGTAAAGAACATCAAAGGATTCTTATCCTACTTTGCTCATAAGTTCTCTCCTGAATTCGATGTAAGTCGGACACATGATTAATGGAAAAACTAAACAATAATTTTTATAGGGATGGTATGATCTGTTTGGTTCCAAAGATTTCCTTCCTGACAATTGGATTACAAAAGAGGCATCCAAAGACATTTGTGGAAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>353 259 208 122 35 23</canonical_bands>
                <polymorphic_bands>612 208 122 35 23</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>212 208 141 129 122 112 35 23 18</canonical_bands>
                <polymorphic_bands>270 212 208 122 112 35 23 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATGGAAAGAAACCTGTTGT</pcr_primer_p1>
		<pcr_primer_p2>GAGTTTCTTTTGGATCAAGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>GAATGGAAAGAAACCTGTTGTTCTAATGCAGCACGGATTACTGGCATGTGCAAGTGATTGGGTTGTGAATCTACCCGATCAGAGCGCAGGTATCACTTTTTTTCATGATGTACTGTATTTCTAATGTACGCTTTGTCAGCTTATGTATTCGCGGATGCTGGTTTTGATGTGTGGTTGGGTAACGTTCGTGGAACAACCTACGGAAGAAAACACACAACTCTTGATCCAAAAGAAACTC</canonical_amplicon>
		<polymorphic_amplicon>GAATGGAAAGAAACCTGTTGTTCTAATGCAGCACGGATTACTGGCATGTGCAAGTGATTGGGTTGTGAATCTACCCGATCAGAGCGCAGGTATCACTTTTTTTCATGATGTACTGTATTTCTAATGTACGCTTTGTCAGCYTATGTATTCGCGGATGCTGGTTTTGATGTGTGGTTGGGTAACGTTCGTGGAACAACCTACGGAAGAAAACACACAACTCTTGATCCAAAAGAAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22535</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>755299</contig_pos>
        <strand>+</strand>
        <context>GATGTTACGA[A/T]TTTTGTAAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAATGTTGAACTTGGGTTAATTTGGTATTTTGTTTCAAATGATGTTACGA</left_flank>
        <right_flank>TTTTGTAAGCATTTTTTTGGTTGGAAGATGTGTCTATCGAAAACACTCTA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTTTTAATCCCCCCCCCCCCCCCCTTTTTTTTTTGATTTTTTGATTTTTAAACCTGATGTAAAAGTTCTACTTTTAAAGAATTGGAACAGCTGAAACTGCCGAAAATGTCTTGCAATTATAAATACGGGACTGACACAAACTTGAAAAATTCTGATTCACACACTTTTTTTCAGAATTTCCTTCCTAGATCAGAAAGGGTAGAAACCACGTTTTTGCGGTCTGGCGATGATCAGAAGATGTCATTTTTATGTAATGAGGAAGCAAAAACACATTTTTACAAGTAAAAGTAGAATAATAACTACACCTGATGAAAAAGAATTTCATTTTCATTTTTGAAATTCTAAATATGAGAGAGAGAGAGAGTACACCTACATAATTATAGACTAGAAAAATGAAAAGAAGGCAAAAGAGCAGAGATTGAATGACAAATATTATTTGAAATTTTGAATGTTGAACTTGGGTTAATTTGGTATTTTGTTTCAAATGATGTTACGATTTTTGTAAGCATTTTTTTGGTTGGAAGATGTGTCTATCGAAAACACTCTAGCGTCAACTTTGAGCCCATATATCTTATTCCCTGAAAGAGATATCAAAAACTAGTCAACTGAAAATTTTTATCATAAAAACTAAAAAATTGTTGTCAGTTGACGCATTATTCAAAAAGTCACTCGTGAAATCTGAAGAAGAAAGAATCTATAAACGTCTGAATTCTGGATCAAAAAATTGTTTCGGATTTATGAAATCGAAATTTAAAAAATCGAAACGAAACAGTTGTAAATATTATGAAATGCTATCTGAGTGATCACACGGATTGTAGAAAGCTTCACAGAACAATTTTGAAAAACTTTCAAACAGAGTTAGCGAAGTGAAAGTTGTTAATACAAGGGGCATGTGATTATTTTGAGCCACTAACAAGAGACAACAAGACATACTAGAGATGTTAAACGAAGTCGAACAGAATGGAACGGAAGGATCTCAATGATTTTGTGTGCACAA</canonical>
            <polymorphic>TGTTTTTTAATCCCCCCCCCCCCCCCCTTTTTTTTTTGATTTTTTGATTTTTAAACCTGATGTAAAAGTTCTACTTTTAAAGAATTGGAACAGCTGAAACTGCCGAAAATGTCTTGCAATTATAAATACGGGACTGACACAAACTTGAAAAATTCTGATTCACACACTTTTTTTCAGAATTTCCTTCCTAGATCAGAAAGGGTAGAAACCACGTTTTTGCGGTCTGGCGATGATCAGAAGATGTCATTTTTATGTAATGAGGAAGCAAAAACACATTTTTACAAGTAAAAGTAGAATAATAACTACACCTGATGAAAAAGAATTTCATTTTCATTTTTGAAATTCTAAATATGAGAGAGAGAGAGAGTACACCTACATAATTATAGACTAGAAAAATGAAAAGAAGGCAAAAGAGCAGAGATTGAATGACAAATATTATTTGAAATTTTGAATGTTGAACTTGGGTTAATTTGGTATTTTGTTTCAAATGATGTTACGAWTTTTGTAAGCATTTTTTTGGTTGGAAGATGTGTCTATCGAAAACACTCTAGCGTCAACTTTGAGCCCATATATCTTATTCCCTGAAAGAGATATCAAAAACTAGTCAACTGAAAATTTTTATCATAAAAACTAAAAAATTGTTGTCAGTTGACGCATTATTCAAAAAGTCACTCGTGAAATCTGAAGAAGAAAGAATCTATAAACGTCTGAATTCTGGATCAAAAAATTGTTTCGGATTTATGAAATCGAAATTTAAAAAATCGAAACGAAACAGTTGTAAATATTATGAAATGCTATCTGAGTGATCACACGGATTGTAGAAAGCTTCACAGAACAATTTTGAAAAACTTTCAAACAGAGTTAGCGAAGTGAAAGTTGTTAATACAAGGGGCATGTGATTATTTTGAGCCACTAACAAGAGACAACAAGACATACTAGAGATGTTAAACGAAGTCGAACAGAATGGAACGGAAGGATCTCAATGATTTTGTGTGCACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATGTTGAACTTGGGTTAAT</pcr_primer_p1>
		<pcr_primer_p2>GATTCTTTCTTCTTCAGATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAATGTTGAACTTGGGTTAATTTGGTATTTTGTTTCAAATGATGTTACGATTTTTGTAAGCATTTTTTTGGTTGGAAGATGTGTCTATCGAAAACACTCTAGCGTCAACTTTGAGCCCATATATCTTATTCCCTGAAAGAGATATCAAAAACTAGTCAACTGAAAATTTTTATCATAAAAACTAAAAAATTGTTGTCAGTTGACGCATTATTCAAAAAGTCACTCGTGAAATCTGAAGAAGAAAGAATC</canonical_amplicon>
		<polymorphic_amplicon>TGAATGTTGAACTTGGGTTAATTTGGTATTTTGTTTCAAATGATGTTACGAWTTTTGTAAGCATTTTTTTGGTTGGAAGATGTGTCTATCGAAAACACTCTAGCGTCAACTTTGAGCCCATATATCTTATTCCCTGAAAGAGATATCAAAAACTAGTCAACTGAAAATTTTTATCATAAAAACTAAAAAATTGTTGTCAGTTGACGCATTATTCAAAAAGTCACTCGTGAAATCTGAAGAAGAAAGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22536</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>769096</contig_pos>
        <strand>+</strand>
        <context>ATCAATTTCA[C/T]CTTAAGAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACATGGAAAGCCTGAAACAAAACACATATTTTTCACATTTATCAATTTCA</left_flank>
        <right_flank>CTTAAGAATTTTTGAAGCTAGTTTTGACAAAAATATATTACCCTGGTACA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATCACCCAAAACGGTTCTATTTTTAGTTTCACGACAGTAAAAAGAGACGGTATCAATTGAATTGTCAAAAAAGGGAAAGACCAAGAAGAAGAAGAAGAAGAGAATATTCAAAAATGTGGTAAACGAAATGCCAAAACTTTTTCATAGAGAAGAAGAAAAACCATAACTAGAGAGGAGACCACTTGACGATTGGAAATTGGAACTTTGTGTTCTCAATTTTCTTGTCCTCTTCCTTCTTATTAACATCCATCATAATTATGTTCTCCATTTAAACGTACTGTTTCTACTTTCATTATATTTTCACATTTGTTTCCATTTCTTATGTTTCTTGACCATCAAGCTCAATGGAATCGAACATGATGTAAAAAATTTAGATTTGATTTGAAACAGAAAAAATATATGTAAAATACGATTTTGATTGTTTTGTACTTTTTTTGAATTTTTGAAACATGGAAAGCCTGAAACAAAACACATATTTTTCACATTTATCAATTTCATCTTAAGAATTTTTGAAGCTAGTTTTGACAAAAATATATTACCCTGGTACAAAAAATGTAGCTATGGAAGAGAAATGCTGGTGGCCGTGGCGGAGGATCTTAAAATGAATACCTACAGTAACCTTCCAGTATTTTTCTTTTTTTCTTTTCTCGTGATCACTGCTTTCCGTATATATTTCTGTTATTTTTCCAAAGAGAAGTCGGAGGATAAAAATTAAAATTGGCGAAAATCGAGCTAACCAATCCGGAAAGTTGAAAAAAAAATGGTTTTGGTTACGGTAGTTGTGTTTGTGGGAGCTTCGGCCACGGCCACCAGCGTTTCTCTTCCTTTTTTGCGCAATCTATTTTAATAATTTCAACTATAAGGTGTGCTTTTTATTTTTCTTGATTTTCGCCTTATTCGTAAACCGCAACTAGAATAATTTCTTTGACTAAAAACTATGTTGCGATATTTAGTGTGCCATTTTTCTATAGGGTGCAAAGTCATAGAAATCTTAAAAT</canonical>
            <polymorphic>ACATCACCCAAAACGGTTCTATTTTTAGTTTCACGACAGTAAAAAGAGACGGTATCAATTGAATTGTCAAAAAAGGGAAAGACCAAGAAGAAGAAGAAGAAGAGAATATTCAAAAATGTGGTAAACGAAATGCCAAAACTTTTTCATAGAGAAGAAGAAAAACCATAACTAGAGAGGAGACCACTTGACGATTGGAAATTGGAACTTTGTGTTCTCAATTTTCTTGTCCTCTTCCTTCTTATTAACATCCATCATAATTATGTTCTCCATTTAAACGTACTGTTTCTACTTTCATTATATTTTCACATTTGTTTCCATTTCTTATGTTTCTTGACCATCAAGCTCAATGGAATCGAACATGATGTAAAAAATTTAGATTTGATTTGAAACAGAAAAAATATATGTAAAATACGATTTTGATTGTTTTGTACTTTTTTTGAATTTTTGAAACATGGAAAGCCTGAAACAAAACACATATTTTTCACATTTATCAATTTCAYCTTAAGAATTTTTGAAGCTAGTTTTGACAAAAATATATTACCCTGGTACAAAAAATGTAGCTATGGAAGAGAAATGCTGGTGGCCGTGGCGGAGGATCTTAAAATGAATACCTACAGTAACCTTCCAGTATTTTTCTTTTTTTCTTTTCTCGTGATCACTGCTTTCCGTATATATTTCTGTTATTTTTCCAAAGAGAAGTCGGAGGATAAAAATTAAAATTGGCGAAAATCGAGCTAACCAATCCGGAAAGTTGAAAAAAAAATGGTTTTGGTTACGGTAGTTGTGTTTGTGGGAGCTTCGGCCACGGCCACCAGCGTTTCTCTTCCTTTTTTGCGCAATCTATTTTAATAATTTCAACTATAAGGTGTGCTTTTTATTTTTCTTGATTTTCGCCTTATTCGTAAACCGCAACTAGAATAATTTCTTTGACTAAAAACTATGTTGCGATATTTAGTGTGCCATTTTTCTATAGGGTGCAAAGTCATAGAAATCTTAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATTTTGATTGTTTTGTACTTT</pcr_primer_p1>
		<pcr_primer_p2>TATTAAAATAGATTGCGCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>440</pcr_amplicon_size>
		<canonical_amplicon>CGATTTTGATTGTTTTGTACTTTTTTTGAATTTTTGAAACATGGAAAGCCTGAAACAAAACACATATTTTTCACATTTATCAATTTCATCTTAAGAATTTTTGAAGCTAGTTTTGACAAAAATATATTACCCTGGTACAAAAAATGTAGCTATGGAAGAGAAATGCTGGTGGCCGTGGCGGAGGATCTTAAAATGAATACCTACAGTAACCTTCCAGTATTTTTCTTTTTTTCTTTTCTCGTGATCACTGCTTTCCGTATATATTTCTGTTATTTTTCCAAAGAGAAGTCGGAGGATAAAAATTAAAATTGGCGAAAATCGAGCTAACCAATCCGGAAAGTTGAAAAAAAAATGGTTTTGGTTACGGTAGTTGTGTTTGTGGGAGCTTCGGCCACGGCCACCAGCGTTTCTCTTCCTTTTTTGCGCAATCTATTTTAATA</canonical_amplicon>
		<polymorphic_amplicon>CGATTTTGATTGTTTTGTACTTTTTTTGAATTTTTGAAACATGGAAAGCCTGAAACAAAACACATATTTTTCACATTTATCAATTTCAYCTTAAGAATTTTTGAAGCTAGTTTTGACAAAAATATATTACCCTGGTACAAAAAATGTAGCTATGGAAGAGAAATGCTGGTGGCCGTGGCGGAGGATCTTAAAATGAATACCTACAGTAACCTTCCAGTATTTTTCTTTTTTTCTTTTCTCGTGATCACTGCTTTCCGTATATATTTCTGTTATTTTTCCAAAGAGAAGTCGGAGGATAAAAATTAAAATTGGCGAAAATCGAGCTAACCAATCCGGAAAGTTGAAAAAAAAATGGTTTTGGTTACGGTAGTTGTGTTTGTGGGAGCTTCGGCCACGGCCACCAGCGTTTCTCTTCCTTTTTTGCGCAATCTATTTTAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22537</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>771039</contig_pos>
        <strand>+</strand>
        <context>AAACAGACTG[A/T]CACATATTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAAAAACGAACAATAGTCTCTCGTGGGCGTATATTGTCAAAACAGACTG</left_flank>
        <right_flank>CACATATTGGAACTTCCAGATTATAACGAACCAAACGTTTTTTGAACTCT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTTTCGATCAAAACATTTTTTTCGAGTTTTTAAAAATATTTTTTAAATCAAACAGACAAACAATCCAAAAAGCACAAAAAAAAATATAGAAAATTGTATTGAAAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCTACCGGGCCGGGCCCGGACCTTGAAATTTTCCTCAGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGTTATTTTTCTTATTTAATGTTTTGAAGAACCACCAAAAATAATGAAAATTCAAGTGCACCGTACGGCGGTGACGTCAGAACTAACAGTGACCAGTTTTCAATTGGTTTAGTCACATAATTATAGTCGCATCGTCAAAAAAAAGACGAGAGTCATTTCGGAAATTGATCTTCCGTTTTTGACAACTAATGATTTATGTGTGTGTTCTATTTCGAAAACTTTCAAAAAACGAACAATAGTCTCTCGTGGGCGTATATTGTCAAAACAGACTGTCACATATTGGAACTTCCAGATTATAACGAACCAAACGTTTTTTGAACTCTAGGAATCAGTATACAGGAGTTTTTTGGAGTAGAGTATGCATTCTAACGTAACGGTGTATAATGCTTTGTGTTCATTCTGCGTACAGCTATCCTGCTTTCATGTATACCATCAGACTGCCATTCCAGCTTTGCACGCGTGGCTCAGTCGGTAGCTGCGCCACACCTTCAATATTTGTCCCACAAGTTCAACTCTTCGAGAGGCTTATATGAACAATTTCGAGAAAAATATTTTTTTCCTGTCCTTCCACCTTCAAAATCAATATACGATTTCTTCTTTCCCCTAATTTTAATCTTTAGTGATAAGCAACATAACTTTTGTCCAGTAATTGTGCTCACCTGATGAAAACCCACGCGACCTACCTACCTCCTGTTATAGTTTTTTTGCTATAACTTGACATTTATTCTACTGATCAACAAAAACAAAACATTTCAGATCTTTGACTCTGGAAG</canonical>
            <polymorphic>ATTTTTTTCGATCAAAACATTTTTTTCGAGTTTTTAAAAATATTTTTTAAATCAAACAGACAAACAATCCAAAAAGCACAAAAAAAAATATAGAAAATTGTATTGAAAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCTACCGGGCCGGGCCCGGACCTTGAAATTTTCCTCAGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGTTATTTTTCTTATTTAATGTTTTGAAGAACCACCAAAAATAATGAAAATTCAAGTGCACCGTACGGCGGTGACGTCAGAACTAACAGTGACCAGTTTTCAATTGGTTTAGTCACATAATTATAGTCGCATCGTCAAAAAAAAGACGAGAGTCATTTCGGAAATTGATCTTCCGTTTTTGACAACTAATGATTTATGTGTGTGTTCTATTTCGAAAACTTTCAAAAAACGAACAATAGTCTCTCGTGGGCGTATATTGTCAAAACAGACTGWCACATATTGGAACTTCCAGATTATAACGAACCAAACGTTTTTTGAACTCTAGGAATCAGTATACAGGAGTTTTTTGGAGTAGAGTATGCATTCTAACGTAACGGTGTATAATGCTTTGTGTTCATTCTGCGTACAGCTATCCTGCTTTCATGTATACCATCAGACTGCCATTCCAGCTTTGCACGCGTGGCTCAGTCGGTAGCTGCGCCACACCTTCAATATTTGTCCCACAAGTTCAACTCTTCGAGAGGCTTATATGAACAATTTCGAGAAAAATATTTTTTTCCTGTCCTTCCACCTTCAAAATCAATATACGATTTCTTCTTTCCCCTAATTTTAATCTTTAGTGATAAGCAACATAACTTTTGTCCAGTAATTGTGCTCACCTGATGAAAACCCACGCGACCTACCTACCTCCTGTTATAGTTTTTTTGCTATAACTTGACATTTATTCTACTGATCAACAAAAACAAAACATTTCAGATCTTTGACTCTGGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>397 289 183 105 26</canonical_bands>
                <polymorphic_bands>397 289 288 26</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>403 297 160 99 23 18</canonical_bands>
                <polymorphic_bands>403 297 259 23 18</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>502 297 160 23 18</canonical_bands>
                <polymorphic_bands>662 297 23 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCAATTGGTTTAGTCACAT</pcr_primer_p1>
		<pcr_primer_p2>AAACTCCTGTATACTGATTCCTAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCAATTGGTTTAGTCACATAATTATAGTCGCATCGTCAAAAAAAAGACGAGAGTCATTTCGGAAATTGATCTTCCGTTTTTGACAACTAATGATTTATGTGTGTGTTCTATTTCGAAAACTTTCAAAAAACGAACAATAGTCTCTCGTGGGCGTATATTGTCAAAACAGACTGTCACATATTGGAACTTCCAGATTATAACGAACCAAACGTTTTTTGAACTCTAGGAATCAGTATACAGGAGTTT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCAATTGGTTTAGTCACATAATTATAGTCGCATCGTCAAAAAAAAGACGAGAGTCATTTCGGAAATTGATCTTCCGTTTTTGACAACTAATGATTTATGTGTGTGTTCTATTTCGAAAACTTTCAAAAAACGAACAATAGTCTCTCGTGGGCGTATATTGTCAAAACAGACTGWCACATATTGGAACTTCCAGATTATAACGAACCAAACGTTTTTTGAACTCTAGGAATCAGTATACAGGAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22538</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>794021</contig_pos>
        <strand>+</strand>
        <context>AAGGAGAGAA[A/T]TCCGAGAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTTCTTCTTTTTGTTGTTCTGTTATTTTCCGAGAGAGAAAAGGAGAGAA</left_flank>
        <right_flank>TCCGAGAAGAATGATGAATAAATGGGTTTAGTGGAGAAAGTTTGAAATGT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCATAATTTTAAAAAGTAGTTTGATTCTCAGCCCTATAGGTTCCCGAGCAAGATGAAGTTCCCATGTTAAAAAAATATATGACTTACGATCTTTCTTCGCAGGATTCTCACAGGTGTGCAGACAGGTCAACTCATCTTGGAATATATTCTCATTTTCACCTTTACATCCGTCATACCAAAATGGAAAGCATTTCTAAAACTTTTTTAGTTAATCTGGCTCAAAAATAAAATCCATCTCTTACCTTTGAATTCTTATCAAAATAGTACTGCTGTCGCCATCTTCCTCCATTGCATTCCTTTTTGAGCCCTTCATCGAAATCCTCGAGGCATGCTCCTGAAAACTTTTTGTGTTTTGTTTTATTGTTCATCCTCCCCAAAAAAAAGAAACATTTTTCTCAGAAAAGGAAGTGACAGTTCATCATTCAAAGTCTCGTTCGCTTCTTCTTCTTCTTCTTCTTTTTGTTGTTCTGTTATTTTCCGAGAGAGAAAAGGAGAGAAATCCGAGAAGAATGATGAATAAATGGGTTTAGTGGAGAAAGTTTGAAATGTGAGGGTGGAGAAAAAACATCAAAACAAGGGTGGTTTTTGTTGTCAACTCACTTGATTTGTACATCGGTTGAGATTCACACAACCATTGACATGTCAATTGGTCATCGAAAATATTTCTGGAATCCGAACGGCATCCGTCAAACCAAAATTGACGGCATGTCAAAGAGGCGTGGTCGAAATAGTAGCGTTGTTGCCATTGACCTAGAATTGGTAATATTGGAAAAAAACAGACATTTCAAAAAATCTCACCATTCAAACATTGATTCCGGTAGTTCATGTCAAATTTATCCCAGCATACTTCTGAACGACAATTAATGAATGGAAGTAGTTGAGATAGAAATATCAGGGATATCCTGAAGTCTAAAGAACATCTTCTGTCGTCAAGTCGTCGTCGTTCTCGTCGTCTTCTTTTGACATGATGATTATGTGAGGTGATGCGTCCACGTGGAA</canonical>
            <polymorphic>AGCATAATTTTAAAAAGTAGTTTGATTCTCAGCCCTATAGGTTCCCGAGCAAGATGAAGTTCCCATGTTAAAAAAATATATGACTTACGATCTTTCTTCGCAGGATTCTCACAGGTGTGCAGACAGGTCAACTCATCTTGGAATATATTCTCATTTTCACCTTTACATCCGTCATACCAAAATGGAAAGCATTTCTAAAACTTTTTTAGTTAATCTGGCTCAAAAATAAAATCCATCTCTTACCTTTGAATTCTTATCAAAATAGTACTGCTGTCGCCATCTTCCTCCATTGCATTCCTTTTTGAGCCCTTCATCGAAATCCTCGAGGCATGCTCCTGAAAACTTTTTGTGTTTTGTTTTATTGTTCATCCTCCCCAAAAAAAAGAAACATTTTTCTCAGAAAAGGAAGTGACAGTTCATCATTCAAAGTCTCGTTCGCTTCTTCTTCTTCTTCTTCTTTTTGTTGTTCTGTTATTTTCCGAGAGAGAAAAGGAGAGAAWTCCGAGAAGAATGATGAATAAATGGGTTTAGTGGAGAAAGTTTGAAATGTGAGGGTGGAGAAAAAACATCAAAACAAGGGTGGTTTTTGTTGTCAACTCACTTGATTTGTACATCGGTTGAGATTCACACAACCATTGACATGTCAATTGGTCATCGAAAATATTTCTGGAATCCGAACGGCATCCGTCAAACCAAAATTGACGGCATGTCAAAGAGGCGTGGTCGAAATAGTAGCGTTGTTGCCATTGACCTAGAATTGGTAATATTGGAAAAAAACAGACATTTCAAAAAATCTCACCATTCAAACATTGATTCCGGTAGTTCATGTCAAATTTATCCCAGCATACTTCTGAACGACAATTAATGAATGGAAGTAGTTGAGATAGAAATATCAGGGATATCCTGAAGTCTAAAGAACATCTTCTGTCGTCAAGTCGTCGTCGTTCTCGTCGTCTTCTTTTGACATGATGATTATGTGAGGTGATGCGTCCACGTGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAAAACTTTTTGTGTTTTGTT</pcr_primer_p1>
		<pcr_primer_p2>CACCCTTGTTTTGATGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAACTTTTTGTGTTTTGTTTTATTGTTCATCCTCCCCAAAAAAAAGAAACATTTTTCTCAGAAAAGGAAGTGACAGTTCATCATTCAAAGTCTCGTTCGCTTCTTCTTCTTCTTCTTCTTTTTGTTGTTCTGTTATTTTCCGAGAGAGAAAAGGAGAGAAATCCGAGAAGAATGATGAATAAATGGGTTTAGTGGAGAAAGTTTGAAATGTGAGGGTGGAGAAAAAACATCAAAACAAGGGTG</canonical_amplicon>
		<polymorphic_amplicon>CTGAAAACTTTTTGTGTTTTGTTTTATTGTTCATCCTCCCCAAAAAAAAGAAACATTTTTCTCAGAAAAGGAAGTGACAGTTCATCATTCAAAGTCTCGTTCGCTTCTTCTTCTTCTTCTTCTTTTTGTTGTTCTGTTATTTTCCGAGAGAGAAAAGGAGAGAAWTCCGAGAAGAATGATGAATAAATGGGTTTAGTGGAGAAAGTTTGAAATGTGAGGGTGGAGAAAAAACATCAAAACAAGGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22539</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>794035</contig_pos>
        <strand>+</strand>
        <context>GAGAAGAATG[A/C]KGAATAAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGTTCTGTTATTTTCCGAGAGAGAAAAGGAGAGAAATCCGAGAAGAATG</left_flank>
        <right_flank>TGAATAAATGGGTTTAGTGGAGAAAGTTTGAAATGTGAGGGTGGAGAAAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTAGTTTGATTCTCAGCCCTATAGGTTCCCGAGCAAGATGAAGTTCCCATGTTAAAAAAATATATGACTTACGATCTTTCTTCGCAGGATTCTCACAGGTGTGCAGACAGGTCAACTCATCTTGGAATATATTCTCATTTTCACCTTTACATCCGTCATACCAAAATGGAAAGCATTTCTAAAACTTTTTTAGTTAATCTGGCTCAAAAATAAAATCCATCTCTTACCTTTGAATTCTTATCAAAATAGTACTGCTGTCGCCATCTTCCTCCATTGCATTCCTTTTTGAGCCCTTCATCGAAATCCTCGAGGCATGCTCCTGAAAACTTTTTGTGTTTTGTTTTATTGTTCATCCTCCCCAAAAAAAAGAAACATTTTTCTCAGAAAAGGAAGTGACAGTTCATCATTCAAAGTCTCGTTCGCTTCTTCTTCTTCTTCTTCTTTTTGTTGTTCTGTTATTTTCCGAGAGAGAAAAGGAGAGAAATCCGAGAAGAATGATGAATAAATGGGTTTAGTGGAGAAAGTTTGAAATGTGAGGGTGGAGAAAAAACATCAAAACAAGGGTGGTTTTTGTTGTCAACTCACTTGATTTGTACATCGGTTGAGATTCACACAACCATTGACATGTCAATTGGTCATCGAAAATATTTCTGGAATCCGAACGGCATCCGTCAAACCAAAATTGACGGCATGTCAAAGAGGCGTGGTCGAAATAGTAGCGTTGTTGCCATTGACCTAGAATTGGTAATATTGGAAAAAAACAGACATTTCAAAAAATCTCACCATTCAAACATTGATTCCGGTAGTTCATGTCAAATTTATCCCAGCATACTTCTGAACGACAATTAATGAATGGAAGTAGTTGAGATAGAAATATCAGGGATATCCTGAAGTCTAAAGAACATCTTCTGTCGTCAAGTCGTCGTCGTTCTCGTCGTCTTCTTTTGACATGATGATTATGTGAGGTGATGCGTCCACGTGGAATCATCTCATCTTGC</canonical>
            <polymorphic>AAGTAGTTTGATTCTCAGCCCTATAGGTTCCCGAGCAAGATGAAGTTCCCATGTTAAAAAAATATATGACTTACGATCTTTCTTCGCAGGATTCTCACAGGTGTGCAGACAGGTCAACTCATCTTGGAATATATTCTCATTTTCACCTTTACATCCGTCATACCAAAATGGAAAGCATTTCTAAAACTTTTTTAGTTAATCTGGCTCAAAAATAAAATCCATCTCTTACCTTTGAATTCTTATCAAAATAGTACTGCTGTCGCCATCTTCCTCCATTGCATTCCTTTTTGAGCCCTTCATCGAAATCCTCGAGGCATGCTCCTGAAAACTTTTTGTGTTTTGTTTTATTGTTCATCCTCCCCAAAAAAAAGAAACATTTTTCTCAGAAAAGGAAGTGACAGTTCATCATTCAAAGTCTCGTTCGCTTCTTCTTCTTCTTCTTCTTTTTGTTGTTCTGTTATTTTCCGAGAGAGAAAAGGAGAGAAATCCGAGAAGAATGMTGAATAAATGGGTTTAGTGGAGAAAGTTTGAAATGTGAGGGTGGAGAAAAAACATCAAAACAAGGGTGGTTTTTGTTGTCAACTCACTTGATTTGTACATCGGTTGAGATTCACACAACCATTGACATGTCAATTGGTCATCGAAAATATTTCTGGAATCCGAACGGCATCCGTCAAACCAAAATTGACGGCATGTCAAAGAGGCGTGGTCGAAATAGTAGCGTTGTTGCCATTGACCTAGAATTGGTAATATTGGAAAAAAACAGACATTTCAAAAAATCTCACCATTCAAACATTGATTCCGGTAGTTCATGTCAAATTTATCCCAGCATACTTCTGAACGACAATTAATGAATGGAAGTAGTTGAGATAGAAATATCAGGGATATCCTGAAGTCTAAAGAACATCTTCTGTCGTCAAGTCGTCGTCGTTCTCGTCGTCTTCTTTTGACATGATGATTATGTGAGGTGATGCGTCCACGTGGAATCATCTCATCTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAAAACTTTTTGTGTTTTGTT</pcr_primer_p1>
		<pcr_primer_p2>CACCCTTGTTTTGATGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAACTTTTTGTGTTTTGTTTTATTGTTCATCCTCCCCAAAAAAAAGAAACATTTTTCTCAGAAAAGGAAGTGACAGTTCATCATTCAAAGTCTCGTTCGCTTCTTCTTCTTCTTCTTCTTTTTGTTGTTCTGTTATTTTCCGAGAGAGAAAAGGAGAGAAATCCGAGAAGAATGATGAATAAATGGGTTTAGTGGAGAAAGTTTGAAATGTGAGGGTGGAGAAAAAACATCAAAACAAGGGTG</canonical_amplicon>
		<polymorphic_amplicon>CTGAAAACTTTTTGTGTTTTGTTTTATTGTTCATCCTCCCCAAAAAAAAGAAACATTTTTCTCAGAAAAGGAAGTGACAGTTCATCATTCAAAGTCTCGTTCGCTTCTTCTTCTTCTTCTTCTTTTTGTTGTTCTGTTATTTTCCGAGAGAGAAAAGGAGAGAAATCCGAGAAGAATGMTGAATAAATGGGTTTAGTGGAGAAAGTTTGAAATGTGAGGGTGGAGAAAAAACATCAAAACAAGGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22540</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>794036</contig_pos>
        <strand>+</strand>
        <context>AGAAGAATGM[G/T]GAATAAATGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTTCTGTTATTTTCCGAGAGAGAAAAGGAGAGAAATCCGAGAAGAATGA</left_flank>
        <right_flank>GAATAAATGGGTTTAGTGGAGAAAGTTTGAAATGTGAGGGTGGAGAAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTAGTTTGATTCTCAGCCCTATAGGTTCCCGAGCAAGATGAAGTTCCCATGTTAAAAAAATATATGACTTACGATCTTTCTTCGCAGGATTCTCACAGGTGTGCAGACAGGTCAACTCATCTTGGAATATATTCTCATTTTCACCTTTACATCCGTCATACCAAAATGGAAAGCATTTCTAAAACTTTTTTAGTTAATCTGGCTCAAAAATAAAATCCATCTCTTACCTTTGAATTCTTATCAAAATAGTACTGCTGTCGCCATCTTCCTCCATTGCATTCCTTTTTGAGCCCTTCATCGAAATCCTCGAGGCATGCTCCTGAAAACTTTTTGTGTTTTGTTTTATTGTTCATCCTCCCCAAAAAAAAGAAACATTTTTCTCAGAAAAGGAAGTGACAGTTCATCATTCAAAGTCTCGTTCGCTTCTTCTTCTTCTTCTTCTTTTTGTTGTTCTGTTATTTTCCGAGAGAGAAAAGGAGAGAAATCCGAGAAGAATGATGAATAAATGGGTTTAGTGGAGAAAGTTTGAAATGTGAGGGTGGAGAAAAAACATCAAAACAAGGGTGGTTTTTGTTGTCAACTCACTTGATTTGTACATCGGTTGAGATTCACACAACCATTGACATGTCAATTGGTCATCGAAAATATTTCTGGAATCCGAACGGCATCCGTCAAACCAAAATTGACGGCATGTCAAAGAGGCGTGGTCGAAATAGTAGCGTTGTTGCCATTGACCTAGAATTGGTAATATTGGAAAAAAACAGACATTTCAAAAAATCTCACCATTCAAACATTGATTCCGGTAGTTCATGTCAAATTTATCCCAGCATACTTCTGAACGACAATTAATGAATGGAAGTAGTTGAGATAGAAATATCAGGGATATCCTGAAGTCTAAAGAACATCTTCTGTCGTCAAGTCGTCGTCGTTCTCGTCGTCTTCTTTTGACATGATGATTATGTGAGGTGATGCGTCCACGTGGAATCATCTCATCTTGCG</canonical>
            <polymorphic>AGTAGTTTGATTCTCAGCCCTATAGGTTCCCGAGCAAGATGAAGTTCCCATGTTAAAAAAATATATGACTTACGATCTTTCTTCGCAGGATTCTCACAGGTGTGCAGACAGGTCAACTCATCTTGGAATATATTCTCATTTTCACCTTTACATCCGTCATACCAAAATGGAAAGCATTTCTAAAACTTTTTTAGTTAATCTGGCTCAAAAATAAAATCCATCTCTTACCTTTGAATTCTTATCAAAATAGTACTGCTGTCGCCATCTTCCTCCATTGCATTCCTTTTTGAGCCCTTCATCGAAATCCTCGAGGCATGCTCCTGAAAACTTTTTGTGTTTTGTTTTATTGTTCATCCTCCCCAAAAAAAAGAAACATTTTTCTCAGAAAAGGAAGTGACAGTTCATCATTCAAAGTCTCGTTCGCTTCTTCTTCTTCTTCTTCTTTTTGTTGTTCTGTTATTTTCCGAGAGAGAAAAGGAGAGAAATCCGAGAAGAATGAKGAATAAATGGGTTTAGTGGAGAAAGTTTGAAATGTGAGGGTGGAGAAAAAACATCAAAACAAGGGTGGTTTTTGTTGTCAACTCACTTGATTTGTACATCGGTTGAGATTCACACAACCATTGACATGTCAATTGGTCATCGAAAATATTTCTGGAATCCGAACGGCATCCGTCAAACCAAAATTGACGGCATGTCAAAGAGGCGTGGTCGAAATAGTAGCGTTGTTGCCATTGACCTAGAATTGGTAATATTGGAAAAAAACAGACATTTCAAAAAATCTCACCATTCAAACATTGATTCCGGTAGTTCATGTCAAATTTATCCCAGCATACTTCTGAACGACAATTAATGAATGGAAGTAGTTGAGATAGAAATATCAGGGATATCCTGAAGTCTAAAGAACATCTTCTGTCGTCAAGTCGTCGTCGTTCTCGTCGTCTTCTTTTGACATGATGATTATGTGAGGTGATGCGTCCACGTGGAATCATCTCATCTTGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAAAACTTTTTGTGTTTTGTT</pcr_primer_p1>
		<pcr_primer_p2>CACCCTTGTTTTGATGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAACTTTTTGTGTTTTGTTTTATTGTTCATCCTCCCCAAAAAAAAGAAACATTTTTCTCAGAAAAGGAAGTGACAGTTCATCATTCAAAGTCTCGTTCGCTTCTTCTTCTTCTTCTTCTTTTTGTTGTTCTGTTATTTTCCGAGAGAGAAAAGGAGAGAAATCCGAGAAGAATGATGAATAAATGGGTTTAGTGGAGAAAGTTTGAAATGTGAGGGTGGAGAAAAAACATCAAAACAAGGGTG</canonical_amplicon>
		<polymorphic_amplicon>CTGAAAACTTTTTGTGTTTTGTTTTATTGTTCATCCTCCCCAAAAAAAAGAAACATTTTTCTCAGAAAAGGAAGTGACAGTTCATCATTCAAAGTCTCGTTCGCTTCTTCTTCTTCTTCTTCTTTTTGTTGTTCTGTTATTTTCCGAGAGAGAAAAGGAGAGAAATCCGAGAAGAATGAKGAATAAATGGGTTTAGTGGAGAAAGTTTGAAATGTGAGGGTGGAGAAAAAACATCAAAACAAGGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22541</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>794153</contig_pos>
        <strand>+</strand>
        <context>GATTCACACA[A/G]CCATTGACAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTTTTTGTTGTCAACTCACTTGATTTGTACATCGGTTGAGATTCACACA</left_flank>
        <right_flank>CCATTGACATGTCAATTGGTCATCGAAAATATTTCTGGAATCCGAACGGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATCTTGGAATATATTCTCATTTTCACCTTTACATCCGTCATACCAAAATGGAAAGCATTTCTAAAACTTTTTTAGTTAATCTGGCTCAAAAATAAAATCCATCTCTTACCTTTGAATTCTTATCAAAATAGTACTGCTGTCGCCATCTTCCTCCATTGCATTCCTTTTTGAGCCCTTCATCGAAATCCTCGAGGCATGCTCCTGAAAACTTTTTGTGTTTTGTTTTATTGTTCATCCTCCCCAAAAAAAAGAAACATTTTTCTCAGAAAAGGAAGTGACAGTTCATCATTCAAAGTCTCGTTCGCTTCTTCTTCTTCTTCTTCTTTTTGTTGTTCTGTTATTTTCCGAGAGAGAAAAGGAGAGAAATCCGAGAAGAATGATGAATAAATGGGTTTAGTGGAGAAAGTTTGAAATGTGAGGGTGGAGAAAAAACATCAAAACAAGGGTGGTTTTTGTTGTCAACTCACTTGATTTGTACATCGGTTGAGATTCACACAACCATTGACATGTCAATTGGTCATCGAAAATATTTCTGGAATCCGAACGGCATCCGTCAAACCAAAATTGACGGCATGTCAAAGAGGCGTGGTCGAAATAGTAGCGTTGTTGCCATTGACCTAGAATTGGTAATATTGGAAAAAAACAGACATTTCAAAAAATCTCACCATTCAAACATTGATTCCGGTAGTTCATGTCAAATTTATCCCAGCATACTTCTGAACGACAATTAATGAATGGAAGTAGTTGAGATAGAAATATCAGGGATATCCTGAAGTCTAAAGAACATCTTCTGTCGTCAAGTCGTCGTCGTTCTCGTCGTCTTCTTTTGACATGATGATTATGTGAGGTGATGCGTCCACGTGGAATCATCTCATCTTGCGAAGGATGATATGGAACGGGACACAACACAATACTCCACGAAGCCTTTTTCTGGGGTTCCATTTTTGAGGAAAAAGTGTTTTTGAGTAGAGAAATAAAAGAAGAATGGAAGAACGAAA</canonical>
            <polymorphic>TCATCTTGGAATATATTCTCATTTTCACCTTTACATCCGTCATACCAAAATGGAAAGCATTTCTAAAACTTTTTTAGTTAATCTGGCTCAAAAATAAAATCCATCTCTTACCTTTGAATTCTTATCAAAATAGTACTGCTGTCGCCATCTTCCTCCATTGCATTCCTTTTTGAGCCCTTCATCGAAATCCTCGAGGCATGCTCCTGAAAACTTTTTGTGTTTTGTTTTATTGTTCATCCTCCCCAAAAAAAAGAAACATTTTTCTCAGAAAAGGAAGTGACAGTTCATCATTCAAAGTCTCGTTCGCTTCTTCTTCTTCTTCTTCTTTTTGTTGTTCTGTTATTTTCCGAGAGAGAAAAGGAGAGAAATCCGAGAAGAATGATGAATAAATGGGTTTAGTGGAGAAAGTTTGAAATGTGAGGGTGGAGAAAAAACATCAAAACAAGGGTGGTTTTTGTTGTCAACTCACTTGATTTGTACATCGGTTGAGATTCACACARCCATTGACATGTCAATTGGTCATCGAAAATATTTCTGGAATCCGAACGGCATCCGTCAAACCAAAATTGACGGCATGTCAAAGAGGCGTGGTCGAAATAGTAGCGTTGTTGCCATTGACCTAGAATTGGTAATATTGGAAAAAAACAGACATTTCAAAAAATCTCACCATTCAAACATTGATTCCGGTAGTTCATGTCAAATTTATCCCAGCATACTTCTGAACGACAATTAATGAATGGAAGTAGTTGAGATAGAAATATCAGGGATATCCTGAAGTCTAAAGAACATCTTCTGTCGTCAAGTCGTCGTCGTTCTCGTCGTCTTCTTTTGACATGATGATTATGTGAGGTGATGCGTCCACGTGGAATCATCTCATCTTGCGAAGGATGATATGGAACGGGACACAACACAATACTCCACGAAGCCTTTTTCTGGGGTTCCATTTTTGAGGAAAAAGTGTTTTTGAGTAGAGAAATAAAAGAAGAATGGAAGAACGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAATGGGTTTAGTGGAGAAAG</pcr_primer_p1>
		<pcr_primer_p2>ATTCTAGGTCAATGGCAACA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATAAATGGGTTTAGTGGAGAAAGTTTGAAATGTGAGGGTGGAGAAAAAACATCAAAACAAGGGTGGTTTTTGTTGTCAACTCACTTGATTTGTACATCGGTTGAGATTCACACAACCATTGACATGTCAATTGGTCATCGAAAATATTTCTGGAATCCGAACGGCATCCGTCAAACCAAAATTGACGGCATGTCAAAGAGGCGTGGTCGAAATAGTAGCGTTGTTGCCATTGACCTAGAAT</canonical_amplicon>
		<polymorphic_amplicon>ATAAATGGGTTTAGTGGAGAAAGTTTGAAATGTGAGGGTGGAGAAAAAACATCAAAACAAGGGTGGTTTTTGTTGTCAACTCACTTGATTTGTACATCGGTTGAGATTCACACARCCATTGACATGTCAATTGGTCATCGAAAATATTTCTGGAATCCGAACGGCATCCGTCAAACCAAAATTGACGGCATGTCAAAGAGGCGTGGTCGAAATAGTAGCGTTGTTGCCATTGACCTAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22542</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>794256</contig_pos>
        <strand>+</strand>
        <context>CGAAATAGTA[A/G]CGTTGTTGCC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGTCAAACCAAAATTGACGGCATGTCAAAGAGGCGTGGTCGAAATAGTA</left_flank>
        <right_flank>CGTTGTTGCCATTGACCTAGAATTGGTAATATTGGAAAAAAACAGACATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCTTACCTTTGAATTCTTATCAAAATAGTACTGCTGTCGCCATCTTCCTCCATTGCATTCCTTTTTGAGCCCTTCATCGAAATCCTCGAGGCATGCTCCTGAAAACTTTTTGTGTTTTGTTTTATTGTTCATCCTCCCCAAAAAAAAGAAACATTTTTCTCAGAAAAGGAAGTGACAGTTCATCATTCAAAGTCTCGTTCGCTTCTTCTTCTTCTTCTTCTTTTTGTTGTTCTGTTATTTTCCGAGAGAGAAAAGGAGAGAAATCCGAGAAGAATGATGAATAAATGGGTTTAGTGGAGAAAGTTTGAAATGTGAGGGTGGAGAAAAAACATCAAAACAAGGGTGGTTTTTGTTGTCAACTCACTTGATTTGTACATCGGTTGAGATTCACACAACCATTGACATGTCAATTGGTCATCGAAAATATTTCTGGAATCCGAACGGCATCCGTCAAACCAAAATTGACGGCATGTCAAAGAGGCGTGGTCGAAATAGTAGCGTTGTTGCCATTGACCTAGAATTGGTAATATTGGAAAAAAACAGACATTTCAAAAAATCTCACCATTCAAACATTGATTCCGGTAGTTCATGTCAAATTTATCCCAGCATACTTCTGAACGACAATTAATGAATGGAAGTAGTTGAGATAGAAATATCAGGGATATCCTGAAGTCTAAAGAACATCTTCTGTCGTCAAGTCGTCGTCGTTCTCGTCGTCTTCTTTTGACATGATGATTATGTGAGGTGATGCGTCCACGTGGAATCATCTCATCTTGCGAAGGATGATATGGAACGGGACACAACACAATACTCCACGAAGCCTTTTTCTGGGGTTCCATTTTTGAGGAAAAAGTGTTTTTGAGTAGAGAAATAAAAGAAGAATGGAAGAACGAAAATGTATAACTATTCGAGTGATTGGGAAATTCCGGGGTCCTTTTTATGGGACAATGGACAATTTCAGCAAAATGGTTGGGAAGGAAATGGGGTCCGGTATGCAA</canonical>
            <polymorphic>TCTCTTACCTTTGAATTCTTATCAAAATAGTACTGCTGTCGCCATCTTCCTCCATTGCATTCCTTTTTGAGCCCTTCATCGAAATCCTCGAGGCATGCTCCTGAAAACTTTTTGTGTTTTGTTTTATTGTTCATCCTCCCCAAAAAAAAGAAACATTTTTCTCAGAAAAGGAAGTGACAGTTCATCATTCAAAGTCTCGTTCGCTTCTTCTTCTTCTTCTTCTTTTTGTTGTTCTGTTATTTTCCGAGAGAGAAAAGGAGAGAAATCCGAGAAGAATGATGAATAAATGGGTTTAGTGGAGAAAGTTTGAAATGTGAGGGTGGAGAAAAAACATCAAAACAAGGGTGGTTTTTGTTGTCAACTCACTTGATTTGTACATCGGTTGAGATTCACACAACCATTGACATGTCAATTGGTCATCGAAAATATTTCTGGAATCCGAACGGCATCCGTCAAACCAAAATTGACGGCATGTCAAAGAGGCGTGGTCGAAATAGTARCGTTGTTGCCATTGACCTAGAATTGGTAATATTGGAAAAAAACAGACATTTCAAAAAATCTCACCATTCAAACATTGATTCCGGTAGTTCATGTCAAATTTATCCCAGCATACTTCTGAACGACAATTAATGAATGGAAGTAGTTGAGATAGAAATATCAGGGATATCCTGAAGTCTAAAGAACATCTTCTGTCGTCAAGTCGTCGTCGTTCTCGTCGTCTTCTTTTGACATGATGATTATGTGAGGTGATGCGTCCACGTGGAATCATCTCATCTTGCGAAGGATGATATGGAACGGGACACAACACAATACTCCACGAAGCCTTTTTCTGGGGTTCCATTTTTGAGGAAAAAGTGTTTTTGAGTAGAGAAATAAAAGAAGAATGGAAGAACGAAAATGTATAACTATTCGAGTGATTGGGAAATTCCGGGGTCCTTTTTATGGGACAATGGACAATTTCAGCAAAATGGTTGGGAAGGAAATGGGGTCCGGTATGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGTACATCGGTTGAGATTC</pcr_primer_p1>
		<pcr_primer_p2>TCAGAAGTATGCTGGGATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTGTACATCGGTTGAGATTCACACAACCATTGACATGTCAATTGGTCATCGAAAATATTTCTGGAATCCGAACGGCATCCGTCAAACCAAAATTGACGGCATGTCAAAGAGGCGTGGTCGAAATAGTAGCGTTGTTGCCATTGACCTAGAATTGGTAATATTGGAAAAAAACAGACATTTCAAAAAATCTCACCATTCAAACATTGATTCCGGTAGTTCATGTCAAATTTATCCCAGCATACTTCTGA</canonical_amplicon>
		<polymorphic_amplicon>ATTTGTACATCGGTTGAGATTCACACAACCATTGACATGTCAATTGGTCATCGAAAATATTTCTGGAATCCGAACGGCATCCGTCAAACCAAAATTGACGGCATGTCAAAGAGGCGTGGTCGAAATAGTARCGTTGTTGCCATTGACCTAGAATTGGTAATATTGGAAAAAAACAGACATTTCAAAAAATCTCACCATTCAAACATTGATTCCGGTAGTTCATGTCAAATTTATCCCAGCATACTTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22543</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>794282</contig_pos>
        <strand>+</strand>
        <context>CCTAGAATTG[A/G]TAATATTGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAAGAGGCGTGGTCGAAATAGTAGCGTTGTTGCCATTGACCTAGAATTG</left_flank>
        <right_flank>TAATATTGGAAAAAAACAGACATTTCAAAAAATCTCACCATTCAAACATT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGTACTGCTGTCGCCATCTTCCTCCATTGCATTCCTTTTTGAGCCCTTCATCGAAATCCTCGAGGCATGCTCCTGAAAACTTTTTGTGTTTTGTTTTATTGTTCATCCTCCCCAAAAAAAAGAAACATTTTTCTCAGAAAAGGAAGTGACAGTTCATCATTCAAAGTCTCGTTCGCTTCTTCTTCTTCTTCTTCTTTTTGTTGTTCTGTTATTTTCCGAGAGAGAAAAGGAGAGAAATCCGAGAAGAATGATGAATAAATGGGTTTAGTGGAGAAAGTTTGAAATGTGAGGGTGGAGAAAAAACATCAAAACAAGGGTGGTTTTTGTTGTCAACTCACTTGATTTGTACATCGGTTGAGATTCACACAACCATTGACATGTCAATTGGTCATCGAAAATATTTCTGGAATCCGAACGGCATCCGTCAAACCAAAATTGACGGCATGTCAAAGAGGCGTGGTCGAAATAGTAGCGTTGTTGCCATTGACCTAGAATTGGTAATATTGGAAAAAAACAGACATTTCAAAAAATCTCACCATTCAAACATTGATTCCGGTAGTTCATGTCAAATTTATCCCAGCATACTTCTGAACGACAATTAATGAATGGAAGTAGTTGAGATAGAAATATCAGGGATATCCTGAAGTCTAAAGAACATCTTCTGTCGTCAAGTCGTCGTCGTTCTCGTCGTCTTCTTTTGACATGATGATTATGTGAGGTGATGCGTCCACGTGGAATCATCTCATCTTGCGAAGGATGATATGGAACGGGACACAACACAATACTCCACGAAGCCTTTTTCTGGGGTTCCATTTTTGAGGAAAAAGTGTTTTTGAGTAGAGAAATAAAAGAAGAATGGAAGAACGAAAATGTATAACTATTCGAGTGATTGGGAAATTCCGGGGTCCTTTTTATGGGACAATGGACAATTTCAGCAAAATGGTTGGGAAGGAAATGGGGTCCGGTATGCAATTTGTATGGGGGCACGAGACGCCATA</canonical>
            <polymorphic>ATAGTACTGCTGTCGCCATCTTCCTCCATTGCATTCCTTTTTGAGCCCTTCATCGAAATCCTCGAGGCATGCTCCTGAAAACTTTTTGTGTTTTGTTTTATTGTTCATCCTCCCCAAAAAAAAGAAACATTTTTCTCAGAAAAGGAAGTGACAGTTCATCATTCAAAGTCTCGTTCGCTTCTTCTTCTTCTTCTTCTTTTTGTTGTTCTGTTATTTTCCGAGAGAGAAAAGGAGAGAAATCCGAGAAGAATGATGAATAAATGGGTTTAGTGGAGAAAGTTTGAAATGTGAGGGTGGAGAAAAAACATCAAAACAAGGGTGGTTTTTGTTGTCAACTCACTTGATTTGTACATCGGTTGAGATTCACACAACCATTGACATGTCAATTGGTCATCGAAAATATTTCTGGAATCCGAACGGCATCCGTCAAACCAAAATTGACGGCATGTCAAAGAGGCGTGGTCGAAATAGTAGCGTTGTTGCCATTGACCTAGAATTGRTAATATTGGAAAAAAACAGACATTTCAAAAAATCTCACCATTCAAACATTGATTCCGGTAGTTCATGTCAAATTTATCCCAGCATACTTCTGAACGACAATTAATGAATGGAAGTAGTTGAGATAGAAATATCAGGGATATCCTGAAGTCTAAAGAACATCTTCTGTCGTCAAGTCGTCGTCGTTCTCGTCGTCTTCTTTTGACATGATGATTATGTGAGGTGATGCGTCCACGTGGAATCATCTCATCTTGCGAAGGATGATATGGAACGGGACACAACACAATACTCCACGAAGCCTTTTTCTGGGGTTCCATTTTTGAGGAAAAAGTGTTTTTGAGTAGAGAAATAAAAGAAGAATGGAAGAACGAAAATGTATAACTATTCGAGTGATTGGGAAATTCCGGGGTCCTTTTTATGGGACAATGGACAATTTCAGCAAAATGGTTGGGAAGGAAATGGGGTCCGGTATGCAATTTGTATGGGGGCACGAGACGCCATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>496 307 112 85</canonical_bands>
                <polymorphic_bands>803 112 85</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTGTACATCGGTTGAGATTC</pcr_primer_p1>
		<pcr_primer_p2>TCAGAAGTATGCTGGGATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTGTACATCGGTTGAGATTCACACAACCATTGACATGTCAATTGGTCATCGAAAATATTTCTGGAATCCGAACGGCATCCGTCAAACCAAAATTGACGGCATGTCAAAGAGGCGTGGTCGAAATAGTAGCGTTGTTGCCATTGACCTAGAATTGGTAATATTGGAAAAAAACAGACATTTCAAAAAATCTCACCATTCAAACATTGATTCCGGTAGTTCATGTCAAATTTATCCCAGCATACTTCTGA</canonical_amplicon>
		<polymorphic_amplicon>ATTTGTACATCGGTTGAGATTCACACAACCATTGACATGTCAATTGGTCATCGAAAATATTTCTGGAATCCGAACGGCATCCGTCAAACCAAAATTGACGGCATGTCAAAGAGGCGTGGTCGAAATAGTAGCGTTGTTGCCATTGACCTAGAATTGRTAATATTGGAAAAAAACAGACATTTCAAAAAATCTCACCATTCAAACATTGATTCCGGTAGTTCATGTCAAATTTATCCCAGCATACTTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22544</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>796038</contig_pos>
        <strand>+</strand>
        <context>GTTAAGTTCA[C/T]TCGAAAGCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCGTAGGTCAGAGTTTTGATCTTTCGAAACTGGTCAATTGTTAAGTTCA</left_flank>
        <right_flank>TCGAAAGCTGTTCTATTTTTTTCTGTTTTTTTGGCATTCCTATGGACTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGTTGGCACGAAATATAGGCCTTCTTCCAACGTCGTCTTCTTTTTTCGTTTCTGACGACGTCTTCCGTCTCAGGGCATCTCTCAACCCTCCGGAGGGACCAAAAACTCGCTCCGTTAACTTTGAAGAAGAAGGAAAAGAAGAAGGCCCTCTGAGAGGGTCCCCCCGTTTATAAGCTTCCCTTTCCTCTCCATATTTTCTCGCGACCCCCTCAACCACTATCTTGACATGAAATCAAAAATCGAATTATATCTGTTTGAGTGAGTGGGATATTTGGTAAGCATCCGATTGCACCCTCATCATTGTCATCAGTCGATTTTGAAATTAGATTTTCCCAAAAAAACGGAGTAGTGGTAATCTTTGAGCCAGTGGGAGCTATTTTTGGCACTATTGAGTACCGAGATTAGGTTAAAATTGTGGAAAATCGGAGTTCATTGGTCTTCAAAAAAATGCGTAGGTCAGAGTTTTGATCTTTCGAAACTGGTCAATTGTTAAGTTCACTCGAAAGCTGTTCTATTTTTTTCTGTTTTTTTGGCATTCCTATGGACTTTTTATTCGCATGAACACACCTTACAGTACAGGGTAGCGCATAATTACCCTGACTTAAGTTTGTACTAACATAAAAATTGAGTAAAGCGTTGTACTGGGCTGAAATTTAACGGCTAAAAATCAAATACTTCATCAATAAACTTGCTAAGGTTCAAATTATGTGATAAACTTTGAGCTGAGTTATAGCTTGTCAAAATAGCTTCATCTCATGACAATCACAACTGTATCCTTGGACAATCATAACAAAACTTAGAATTGAGGAATCGCTTTGAAAATTTCAGTAGCTTAGAATCAAACCTAAATTCATATTCATACAAGTTTTTGTGCATTCAAATCAGTTATGTCTAAAGATATACCTGTTTTTAACAGTCCGGGAAATTGTGTGCCACTCTGTGACTTCTGATTCTTTCAGAATACCAAAAGCCCAACTCCGTTGTTTCAGAAGCAACATT</canonical>
            <polymorphic>GAGTTGGCACGAAATATAGGCCTTCTTCCAACGTCGTCTTCTTTTTTCGTTTCTGACGACGTCTTCCGTCTCAGGGCATCTCTCAACCCTCCGGAGGGACCAAAAACTCGCTCCGTTAACTTTGAAGAAGAAGGAAAAGAAGAAGGCCCTCTGAGAGGGTCCCCCCGTTTATAAGCTTCCCTTTCCTCTCCATATTTTCTCGCGACCCCCTCAACCACTATCTTGACATGAAATCAAAAATCGAATTATATCTGTTTGAGTGAGTGGGATATTTGGTAAGCATCCGATTGCACCCTCATCATTGTCATCAGTCGATTTTGAAATTAGATTTTCCCAAAAAAACGGAGTAGTGGTAATCTTTGAGCCAGTGGGAGCTATTTTTGGCACTATTGAGTACCGAGATTAGGTTAAAATTGTGGAAAATCGGAGTTCATTGGTCTTCAAAAAAATGCGTAGGTCAGAGTTTTGATCTTTCGAAACTGGTCAATTGTTAAGTTCAYTCGAAAGCTGTTCTATTTTTTTCTGTTTTTTTGGCATTCCTATGGACTTTTTATTCGCATGAACACACCTTACAGTACAGGGTAGCGCATAATTACCCTGACTTAAGTTTGTACTAACATAAAAATTGAGTAAAGCGTTGTACTGGGCTGAAATTTAACGGCTAAAAATCAAATACTTCATCAATAAACTTGCTAAGGTTCAAATTATGTGATAAACTTTGAGCTGAGTTATAGCTTGTCAAAATAGCTTCATCTCATGACAATCACAACTGTATCCTTGGACAATCATAACAAAACTTAGAATTGAGGAATCGCTTTGAAAATTTCAGTAGCTTAGAATCAAACCTAAATTCATATTCATACAAGTTTTTGTGCATTCAAATCAGTTATGTCTAAAGATATACCTGTTTTTAACAGTCCGGGAAATTGTGTGCCACTCTGTGACTTCTGATTCTTTCAGAATACCAAAAGCCCAACTCCGTTGTTTCAGAAGCAACATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>208 144 108 81 66 60 57 57 55 45 32 26 18 16 9 7 4 3 2 2</canonical_bands>
                <polymorphic_bands>208 147 144 108 60 57 57 55 45 32 26 18 16 9 7 4 3 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>503 380 117</canonical_bands>
                <polymorphic_bands>883 117</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACGGAGTAGTGGTAATCTT</pcr_primer_p1>
		<pcr_primer_p2>TACCCTGTACTGTAAGGTGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAAACGGAGTAGTGGTAATCTTTGAGCCAGTGGGAGCTATTTTTGGCACTATTGAGTACCGAGATTAGGTTAAAATTGTGGAAAATCGGAGTTCATTGGTCTTCAAAAAAATGCGTAGGTCAGAGTTTTGATCTTTCGAAACTGGTCAATTGTTAAGTTCACTCGAAAGCTGTTCTATTTTTTTCTGTTTTTTTGGCATTCCTATGGACTTTTTATTCGCATGAACACACCTTACAGTACAGGGTA</canonical_amplicon>
		<polymorphic_amplicon>AAAAACGGAGTAGTGGTAATCTTTGAGCCAGTGGGAGCTATTTTTGGCACTATTGAGTACCGAGATTAGGTTAAAATTGTGGAAAATCGGAGTTCATTGGTCTTCAAAAAAATGCGTAGGTCAGAGTTTTGATCTTTCGAAACTGGTCAATTGTTAAGTTCAYTCGAAAGCTGTTCTATTTTTTTCTGTTTTTTTGGCATTCCTATGGACTTTTTATTCGCATGAACACACCTTACAGTACAGGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22545</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>834086</contig_pos>
        <strand>+</strand>
        <context>TAAGAGATGT[G/T]ATTTGCTAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTATATGTGCAAATGTGGATTGCACTTTTGATGAAAATGTAAGAGATGT</left_flank>
        <right_flank>ATTTGCTAGAAAATTAATCAAAGAATCTTGAATTTCAGACACTTTGCAAC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGATGAATTGAAGAATTCAAGTAGTTAGAAATTTTGACTCACATGACTTTATTTTTTACGGGTTACCAATTATCAGTTGCAATAAAATTTCATCCCTAAAAGGTTCTTATTTGCAAACACAGTTGGGTTTCAACCCACATTTATACCTATCTTATCACACTAATCCAAGATCTACTAACAATTCCAGAATCCTCGAGTGGTGGTGCATCGGAAGGAGCAGGTGGCACATTTGATGACGCTGGAATCCCGGGAAGAACGCCTACACAGCTTCTAGATTTCGATGGGAATGACGTGACGATAAACCAATTTGAGAGTGTATCAGTTCCGGTTCCAACTCGGGCGGTTCATTATGGTGCACCAACTAGTCAGAAGATTACAAACCCGATTAAAGATGAGAAGAGAAAGGGAAATGATTTGGGAGGTCCCCGAACTGGACCAATGTTTGCATCTATATGTGCAAATGTGGATTGCACTTTTGATGAAAATGTAAGAGATGTTATTTGCTAGAAAATTAATCAAAGAATCTTGAATTTCAGACACTTTGCAACTATGTAACAAGTTCCACTAACGTGACTGCGGAGGATGGAAGTTGCTTGAAGAAATGGGCACTTTCCAATAGAAGTGTACTCAACTCATTGACAGGTATTCCGTCGGATATATCTAAAGGTTCATAGCTTAAGTTCAGTTCCCAGTGAAAATGAGTTTTTAGGTGGCTACTTCTTATACGCAGGTGGCACTGCCGCAACTCCAGGAGACACTTTCATTCTTTCATCAAACCATCCATTGAGCATTTCTGAACCAGCCAGAGTTGATTTCTTTGTTTATCAAGCTGGTATTCGAGGACAATTTAGAGTGTGTATAGATGATAACGAGGATTGTCCAGTGGTTTTGGAGGGGAAGTGAGTTGACCCGGATACACCTTTAAACCTCTATTAGAACACTATCAAGTTTGAGCTCTATTGTCCTATGCAAGATATCAAAAAAGTGTCAACTGACAA</canonical>
            <polymorphic>GAGGATGAATTGAAGAATTCAAGTAGTTAGAAATTTTGACTCACATGACTTTATTTTTTACGGGTTACCAATTATCAGTTGCAATAAAATTTCATCCCTAAAAGGTTCTTATTTGCAAACACAGTTGGGTTTCAACCCACATTTATACCTATCTTATCACACTAATCCAAGATCTACTAACAATTCCAGAATCCTCGAGTGGTGGTGCATCGGAAGGAGCAGGTGGCACATTTGATGACGCTGGAATCCCGGGAAGAACGCCTACACAGCTTCTAGATTTCGATGGGAATGACGTGACGATAAACCAATTTGAGAGTGTATCAGTTCCGGTTCCAACTCGGGCGGTTCATTATGGTGCACCAACTAGTCAGAAGATTACAAACCCGATTAAAGATGAGAAGAGAAAGGGAAATGATTTGGGAGGTCCCCGAACTGGACCAATGTTTGCATCTATATGTGCAAATGTGGATTGCACTTTTGATGAAAATGTAAGAGATGTKATTTGCTAGAAAATTAATCAAAGAATCTTGAATTTCAGACACTTTGCAACTATGTAACAAGTTCCACTAACGTGACTGCGGAGGATGGAAGTTGCTTGAAGAAATGGGCACTTTCCAATAGAAGTGTACTCAACTCATTGACAGGTATTCCGTCGGATATATCTAAAGGTTCATAGCTTAAGTTCAGTTCCCAGTGAAAATGAGTTTTTAGGTGGCTACTTCTTATACGCAGGTGGCACTGCCGCAACTCCAGGAGACACTTTCATTCTTTCATCAAACCATCCATTGAGCATTTCTGAACCAGCCAGAGTTGATTTCTTTGTTTATCAAGCTGGTATTCGAGGACAATTTAGAGTGTGTATAGATGATAACGAGGATTGTCCAGTGGTTTTGGAGGGGAAGTGAGTTGACCCGGATACACCTTTAAACCTCTATTAGAACACTATCAAGTTTGAGCTCTATTGTCCTATGCAAGATATCAAAAAAGTGTCAACTGACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTTGAGAGTGTATCAGTTCC</pcr_primer_p1>
		<pcr_primer_p2>TACATAGTTGCAAAGTGTCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAATTTGAGAGTGTATCAGTTCCGGTTCCAACTCGGGCGGTTCATTATGGTGCACCAACTAGTCAGAAGATTACAAACCCGATTAAAGATGAGAAGAGAAAGGGAAATGATTTGGGAGGTCCCCGAACTGGACCAATGTTTGCATCTATATGTGCAAATGTGGATTGCACTTTTGATGAAAATGTAAGAGATGTTATTTGCTAGAAAATTAATCAAAGAATCTTGAATTTCAGACACTTTGCAACTATGTA</canonical_amplicon>
		<polymorphic_amplicon>CAATTTGAGAGTGTATCAGTTCCGGTTCCAACTCGGGCGGTTCATTATGGTGCACCAACTAGTCAGAAGATTACAAACCCGATTAAAGATGAGAAGAGAAAGGGAAATGATTTGGGAGGTCCCCGAACTGGACCAATGTTTGCATCTATATGTGCAAATGTGGATTGCACTTTTGATGAAAATGTAAGAGATGTKATTTGCTAGAAAATTAATCAAAGAATCTTGAATTTCAGACACTTTGCAACTATGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22546</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>834229</contig_pos>
        <strand>+</strand>
        <context>ACTCATTGAC[A/C]GGTATTCCGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCTTGAAGAAATGGGCACTTTCCAATAGAAGTGTACTCAACTCATTGAC</left_flank>
        <right_flank>GGTATTCCGTCGGATATATCTAAAGGTTCATAGCTTAAGTTCAGTTCCCA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATACCTATCTTATCACACTAATCCAAGATCTACTAACAATTCCAGAATCCTCGAGTGGTGGTGCATCGGAAGGAGCAGGTGGCACATTTGATGACGCTGGAATCCCGGGAAGAACGCCTACACAGCTTCTAGATTTCGATGGGAATGACGTGACGATAAACCAATTTGAGAGTGTATCAGTTCCGGTTCCAACTCGGGCGGTTCATTATGGTGCACCAACTAGTCAGAAGATTACAAACCCGATTAAAGATGAGAAGAGAAAGGGAAATGATTTGGGAGGTCCCCGAACTGGACCAATGTTTGCATCTATATGTGCAAATGTGGATTGCACTTTTGATGAAAATGTAAGAGATGTTATTTGCTAGAAAATTAATCAAAGAATCTTGAATTTCAGACACTTTGCAACTATGTAACAAGTTCCACTAACGTGACTGCGGAGGATGGAAGTTGCTTGAAGAAATGGGCACTTTCCAATAGAAGTGTACTCAACTCATTGACAGGTATTCCGTCGGATATATCTAAAGGTTCATAGCTTAAGTTCAGTTCCCAGTGAAAATGAGTTTTTAGGTGGCTACTTCTTATACGCAGGTGGCACTGCCGCAACTCCAGGAGACACTTTCATTCTTTCATCAAACCATCCATTGAGCATTTCTGAACCAGCCAGAGTTGATTTCTTTGTTTATCAAGCTGGTATTCGAGGACAATTTAGAGTGTGTATAGATGATAACGAGGATTGTCCAGTGGTTTTGGAGGGGAAGTGAGTTGACCCGGATACACCTTTAAACCTCTATTAGAACACTATCAAGTTTGAGCTCTATTGTCCTATGCAAGATATCAAAAAAGTGTCAACTGACAAAACATTTCTGATAATCTAATAAACAAATAATCAGTTGACAAATTTCTTATGTCTTTGACAGGTACCGAGATAAATTGTCTCAAAGTTAAAAGTTAGAGGGCCCTTCTATTACAGGTTGTACGGTATGTTAATCAATTTCTATA</canonical>
            <polymorphic>TATACCTATCTTATCACACTAATCCAAGATCTACTAACAATTCCAGAATCCTCGAGTGGTGGTGCATCGGAAGGAGCAGGTGGCACATTTGATGACGCTGGAATCCCGGGAAGAACGCCTACACAGCTTCTAGATTTCGATGGGAATGACGTGACGATAAACCAATTTGAGAGTGTATCAGTTCCGGTTCCAACTCGGGCGGTTCATTATGGTGCACCAACTAGTCAGAAGATTACAAACCCGATTAAAGATGAGAAGAGAAAGGGAAATGATTTGGGAGGTCCCCGAACTGGACCAATGTTTGCATCTATATGTGCAAATGTGGATTGCACTTTTGATGAAAATGTAAGAGATGTTATTTGCTAGAAAATTAATCAAAGAATCTTGAATTTCAGACACTTTGCAACTATGTAACAAGTTCCACTAACGTGACTGCGGAGGATGGAAGTTGCTTGAAGAAATGGGCACTTTCCAATAGAAGTGTACTCAACTCATTGACMGGTATTCCGTCGGATATATCTAAAGGTTCATAGCTTAAGTTCAGTTCCCAGTGAAAATGAGTTTTTAGGTGGCTACTTCTTATACGCAGGTGGCACTGCCGCAACTCCAGGAGACACTTTCATTCTTTCATCAAACCATCCATTGAGCATTTCTGAACCAGCCAGAGTTGATTTCTTTGTTTATCAAGCTGGTATTCGAGGACAATTTAGAGTGTGTATAGATGATAACGAGGATTGTCCAGTGGTTTTGGAGGGGAAGTGAGTTGACCCGGATACACCTTTAAACCTCTATTAGAACACTATCAAGTTTGAGCTCTATTGTCCTATGCAAGATATCAAAAAAGTGTCAACTGACAAAACATTTCTGATAATCTAATAAACAAATAATCAGTTGACAAATTTCTTATGTCTTTGACAGGTACCGAGATAAATTGTCTCAAAGTTAAAAGTTAGAGGGCCCTTCTATTACAGGTTGTACGGTATGTTAATCAATTTCTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCACTTTTGATGAAAATGTAAGA</pcr_primer_p1>
		<pcr_primer_p2>AAGTAGCCACCTAAAAACTCATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCACTTTTGATGAAAATGTAAGAGATGTTATTTGCTAGAAAATTAATCAAAGAATCTTGAATTTCAGACACTTTGCAACTATGTAACAAGTTCCACTAACGTGACTGCGGAGGATGGAAGTTGCTTGAAGAAATGGGCACTTTCCAATAGAAGTGTACTCAACTCATTGACAGGTATTCCGTCGGATATATCTAAAGGTTCATAGCTTAAGTTCAGTTCCCAGTGAAAATGAGTTTTTAGGTGGCTACTT</canonical_amplicon>
		<polymorphic_amplicon>GCACTTTTGATGAAAATGTAAGAGATGTTATTTGCTAGAAAATTAATCAAAGAATCTTGAATTTCAGACACTTTGCAACTATGTAACAAGTTCCACTAACGTGACTGCGGAGGATGGAAGTTGCTTGAAGAAATGGGCACTTTCCAATAGAAGTGTACTCAACTCATTGACMGGTATTCCGTCGGATATATCTAAAGGTTCATAGCTTAAGTTCAGTTCCCAGTGAAAATGAGTTTTTAGGTGGCTACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22547</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>834787</contig_pos>
        <strand>+</strand>
        <context>TTCGACATCA[A/G]TCCAGGACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGATATCGACTCAAACGCTCAGAAATGGCAAAATTACTATTTCGACATCA</left_flank>
        <right_flank>TCCAGGACAACATGTGCTCCATTTTGTTGTCGAAGGACTCCACAACAATT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTTTTTAGGTGGCTACTTCTTATACGCAGGTGGCACTGCCGCAACTCCAGGAGACACTTTCATTCTTTCATCAAACCATCCATTGAGCATTTCTGAACCAGCCAGAGTTGATTTCTTTGTTTATCAAGCTGGTATTCGAGGACAATTTAGAGTGTGTATAGATGATAACGAGGATTGTCCAGTGGTTTTGGAGGGGAAGTGAGTTGACCCGGATACACCTTTAAACCTCTATTAGAACACTATCAAGTTTGAGCTCTATTGTCCTATGCAAGATATCAAAAAAGTGTCAACTGACAAAACATTTCTGATAATCTAATAAACAAATAATCAGTTGACAAATTTCTTATGTCTTTGACAGGTACCGAGATAAATTGTCTCAAAGTTAAAAGTTAGAGGGCCCTTCTATTACAGGTTGTACGGTATGTTAATCAATTTCTATATTTTCAGAGATATCGACTCAAACGCTCAGAAATGGCAAAATTACTATTTCGACATCAATCCAGGACAACATGTGCTCCATTTTGTTGTCGAAGGACTCCACAACAATTATGCGATTGGATTGGATAATATTCAACTGTTGAACCGATTCGGGACTAGTTCCTTGTCTTGTTAAGAAAAACAAATGTATTTCCTAAAAAAATATTTATTTAACGAATCTATGAAAGTCAAAAAACTAGACAGCAAGAAGAAAGTTAAACCAGCAAATGTCCATTTTTCAATTAAAAAAACAAATAGGTGAATTGAAATTGCCAAATAAAATACTCAGTGAGGAAGGGGTGTGATTTGTTGCATGTAGTTGTTTGTTAGAGAAATCTAGTTCTCCCAGTTCAGACAAAAGCGAATAGTTTGCGAGGGGGTATATGAGATGGATACAGTAGATTTTTACATTTTACAAAATTCAATAATTTCTTCTGTTTTACAACTTCTTCTTGGCGCTAACCATGAACATTCCATTGATCTCATAGAGGACACATCCACTGTCAGATTCGTCGACATAG</canonical>
            <polymorphic>GAGTTTTTAGGTGGCTACTTCTTATACGCAGGTGGCACTGCCGCAACTCCAGGAGACACTTTCATTCTTTCATCAAACCATCCATTGAGCATTTCTGAACCAGCCAGAGTTGATTTCTTTGTTTATCAAGCTGGTATTCGAGGACAATTTAGAGTGTGTATAGATGATAACGAGGATTGTCCAGTGGTTTTGGAGGGGAAGTGAGTTGACCCGGATACACCTTTAAACCTCTATTAGAACACTATCAAGTTTGAGCTCTATTGTCCTATGCAAGATATCAAAAAAGTGTCAACTGACAAAACATTTCTGATAATCTAATAAACAAATAATCAGTTGACAAATTTCTTATGTCTTTGACAGGTACCGAGATAAATTGTCTCAAAGTTAAAAGTTAGAGGGCCCTTCTATTACAGGTTGTACGGTATGTTAATCAATTTCTATATTTTCAGAGATATCGACTCAAACGCTCAGAAATGGCAAAATTACTATTTCGACATCARTCCAGGACAACATGTGCTCCATTTTGTTGTCGAAGGACTCCACAACAATTATGCGATTGGATTGGATAATATTCAACTGTTGAACCGATTCGGGACTAGTTCCTTGTCTTGTTAAGAAAAACAAATGTATTTCCTAAAAAAATATTTATTTAACGAATCTATGAAAGTCAAAAAACTAGACAGCAAGAAGAAAGTTAAACCAGCAAATGTCCATTTTTCAATTAAAAAAACAAATAGGTGAATTGAAATTGCCAAATAAAATACTCAGTGAGGAAGGGGTGTGATTTGTTGCATGTAGTTGTTTGTTAGAGAAATCTAGTTCTCCCAGTTCAGACAAAAGCGAATAGTTTGCGAGGGGGTATATGAGATGGATACAGTAGATTTTTACATTTTACAAAATTCAATAATTTCTTCTGTTTTACAACTTCTTCTTGGCGCTAACCATGAACATTCCATTGATCTCATAGAGGACACATCCACTGTCAGATTCGTCGACATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTATATTTTCAGAGATATCGACTC</pcr_primer_p1>
		<pcr_primer_p2>TTTGACTTTCATAGATTCGTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>TTCTATATTTTCAGAGATATCGACTCAAACGCTCAGAAATGGCAAAATTACTATTTCGACATCAATCCAGGACAACATGTGCTCCATTTTGTTGTCGAAGGACTCCACAACAATTATGCGATTGGATTGGATAATATTCAACTGTTGAACCGATTCGGGACTAGTTCCTTGTCTTGTTAAGAAAAACAAATGTATTTCCTAAAAAAATATTTATTTAACGAATCTATGAAAGTCAAA</canonical_amplicon>
		<polymorphic_amplicon>TTCTATATTTTCAGAGATATCGACTCAAACGCTCAGAAATGGCAAAATTACTATTTCGACATCARTCCAGGACAACATGTGCTCCATTTTGTTGTCGAAGGACTCCACAACAATTATGCGATTGGATTGGATAATATTCAACTGTTGAACCGATTCGGGACTAGTTCCTTGTCTTGTTAAGAAAAACAAATGTATTTCCTAAAAAAATATTTATTTAACGAATCTATGAAAGTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22548</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>25826</contig_pos>
        <strand></strand>
        <context>TAGAATCACA[T/A]CATAATTTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAAATCTCCACATTATGGATTCTTGGAATCCCGGACTTTTTAGAATCACA</left_flank>
        <right_flank>CATAATTTAAATTTCCAAGTTTTCTAATCAGAAATTTTCGCCATTTCCCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGCAAAAACAGTTTTTGAGTTATGCGCCTTTAAAGATGGGATGCTTGATTACCGAGAGAGGCGAGACGCAGACACCCAGTTTTTAGAGGCGCATATCTCAAAAACCAAAATAGACGCAAAAAAGTTGTCAGATAAAAATTCGAAGTTCTATTTTCGTTTAGTATAACCTGAATATTTGCAGTGCAATGGAAAATTCTGAAACTTTTTTTCCGAATTTTCAGAAATACCGTATTCCTTCTGTCAACTTTGAGCTCAATTATCTCAATTCCAGTAAAAGATATCGAAAACTTGTCAAGTAATAAATTAGTTATCATAATATCAGCAATATTTTATCAGTGGACAAATTTCTGATATCTTTCAGAGGAATTGAGATAATTGAGCTGAAAATGGACTGCAGAGATACGGTATTGGAATCTAATTGTAATTTAAAGAACTCCCAAACTTTGAAAAATCTCCACATTATGGATTCTTGGAATCCCGGACTTTTTAGAATCACATCATAATTTAAATTTCCAAGTTTTCTAATCAGAAATTTTCGCCATTTCCCAGCTCCCCCTGGAGACATTATGATCAAAATTTTTATTTTCTACTTTTTCCAAGAATTCCCATTCCGGGATTCTTTGAAAAAAGGGACAACATGAAATAATGGGAAAACCAGAAAGCACTCAAGAAAAGAAATAAAAAATGGGAAAATGGACTACGGTAGTTTATGGGTCTTTTGAGAATCAAAAATCGGTGGTGGGAGTGTGAATAGAAAAGGAAATTGAAATAAGGTGGGCTTATTCAAAAATAATGTTTTTTCAGAAATTGGTTTGTATGAAACATGGTGGAGCTTCTGATCTCAAATCTGAAATATTGGAAAACACGAACATTTTCAGGCACATTACCGTATTTGCCCCAATCGAAAGCCACCCTATATGTGCAGCTTGATTATTTCGGTTCTTTTAAAAGATATCAACAAATTTTGAACTGATAAACTGTTTATCATAATATCACCA</canonical>
            <polymorphic>CTAGCAAAAACAGTTTTTGAGTTATGCGCCTTTAAAGATGGGATGCTTGATTACCGAGAGAGGCGAGACGCAGACACCCAGTTTTTAGAGGCGCATATCTCAAAAACCAAAATAGACGCAAAAAAGTTGTCAGATAAAAATTCGAAGTTCTATTTTCGTTTAGTATAACCTGAATATTTGCAGTGCAATGGAAAATTCTGAAACTTTTTTTCCGAATTTTCAGAAATACCGTATTCCTTCTGTCAACTTTGAGCTCAATTATCTCAATTCCAGTAAAAGATATCGAAAACTTGTCAAGTAATAAATTAGTTATCATAATATCAGCAATATTTTATCAGTGGACAAATTTCTGATATCTTTCAGAGGAATTGAGATAATTGAGCTGAAAATGGACTGCAGAGATACGGTATTGGAATCTAATTGTAATTTAAAGAACTCCCAAACTTTGAAAAATCTCCACATTATGGATTCTTGGAATCCCGGACTTTTTAGAATCACAWCATAATTTAAATTTCCAAGTTTTCTAATCAGAAATTTTCGCCATTTCCCAGCTCCCCCTGGAGACATTATGATCAAAATTTTTATTTTCTACTTTTTCCAAGAATTCCCATTCCGGGATTCTTTGAAAAAAGGGACAACATGAAATAATGGGAAAACCAGAAAGCACTCAAGAAAAGAAATAAAAAATGGGAAAATGGACTACGGTAGTTTATGGGTCTTTTGAGAATCAAAAATCGGTGGTGGGAGTGTGAATAGAAAAGGAAATTGAAATAAGGTGGGCTTATTCAAAAATAATGTTTTTTCAGAAATTGGTTTGTATGAAACATGGTGGAGCTTCTGATCTCAAATCTGAAATATTGGAAAACACGAACATTTTCAGGCACATTACCGTATTTGCCCCAATCGAAAGCCACCCTATATGTGCAGCTTGATTATTTCGGTTCTTTTAAAAGATATCAACAAATTTTGAACTGATAAACTGTTTATCATAATATCACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTTTGAAAAATCTCCACATTA</pcr_primer_p1>
		<pcr_primer_p2>ATTTCTTTTCTTGAGTGCTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AACTTTGAAAAATCTCCACATTATGGATTCTTGGAATCCCGGACTTTTTAGAATCACATCATAATTTAAATTTCCAAGTTTTCTAATCAGAAATTTTCGCCATTTCCCAGCTCCCCCTGGAGACATTATGATCAAAATTTTTATTTTCTACTTTTTCCAAGAATTCCCATTCCGGGATTCTTTGAAAAAAGGGACAACATGAAATAATGGGAAAACCAGAAAGCACTCAAGAAAAGAAAT</canonical_amplicon>
		<polymorphic_amplicon>AACTTTGAAAAATCTCCACATTATGGATTCTTGGAATCCCGGACTTTTTAGAATCACAWCATAATTTAAATTTCCAAGTTTTCTAATCAGAAATTTTCGCCATTTCCCAGCTCCCCCTGGAGACATTATGATCAAAATTTTTATTTTCTACTTTTTCCAAGAATTCCCATTCCGGGATTCTTTGAAAAAAGGGACAACATGAAATAATGGGAAAACCAGAAAGCACTCAAGAAAAGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22549</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>25949</contig_pos>
        <strand></strand>
        <context>CCGGGATTCT[T/C]TGAAAAAAGK</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCAAAATTTTTATTTTCTACTTTTTCCAAGAATTCCCATTCCGGGATTCT</left_flank>
        <right_flank>TGAAAAAAGGGACAACATGAAATAATGGGAAAACCAGAAAGCACTCAAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTGTCAGATAAAAATTCGAAGTTCTATTTTCGTTTAGTATAACCTGAATATTTGCAGTGCAATGGAAAATTCTGAAACTTTTTTTCCGAATTTTCAGAAATACCGTATTCCTTCTGTCAACTTTGAGCTCAATTATCTCAATTCCAGTAAAAGATATCGAAAACTTGTCAAGTAATAAATTAGTTATCATAATATCAGCAATATTTTATCAGTGGACAAATTTCTGATATCTTTCAGAGGAATTGAGATAATTGAGCTGAAAATGGACTGCAGAGATACGGTATTGGAATCTAATTGTAATTTAAAGAACTCCCAAACTTTGAAAAATCTCCACATTATGGATTCTTGGAATCCCGGACTTTTTAGAATCACATCATAATTTAAATTTCCAAGTTTTCTAATCAGAAATTTTCGCCATTTCCCAGCTCCCCCTGGAGACATTATGATCAAAATTTTTATTTTCTACTTTTTCCAAGAATTCCCATTCCGGGATTCTTTGAAAAAAGGGACAACATGAAATAATGGGAAAACCAGAAAGCACTCAAGAAAAGAAATAAAAAATGGGAAAATGGACTACGGTAGTTTATGGGTCTTTTGAGAATCAAAAATCGGTGGTGGGAGTGTGAATAGAAAAGGAAATTGAAATAAGGTGGGCTTATTCAAAAATAATGTTTTTTCAGAAATTGGTTTGTATGAAACATGGTGGAGCTTCTGATCTCAAATCTGAAATATTGGAAAACACGAACATTTTCAGGCACATTACCGTATTTGCCCCAATCGAAAGCCACCCTATATGTGCAGCTTGATTATTTCGGTTCTTTTAAAAGATATCAACAAATTTTGAACTGATAAACTGTTTATCATAATATCACCAATGTTTTATCAGTTGGGATACTTTTAATATCTCTCATAGGAACCGAGATAATTGAGCTTAAAGTGCACGTATAAGGGGGGCTTCTATTTGAGCACATACGGTAATCAACCATATTTTGAGGAG</canonical>
            <polymorphic>AAGTTGTCAGATAAAAATTCGAAGTTCTATTTTCGTTTAGTATAACCTGAATATTTGCAGTGCAATGGAAAATTCTGAAACTTTTTTTCCGAATTTTCAGAAATACCGTATTCCTTCTGTCAACTTTGAGCTCAATTATCTCAATTCCAGTAAAAGATATCGAAAACTTGTCAAGTAATAAATTAGTTATCATAATATCAGCAATATTTTATCAGTGGACAAATTTCTGATATCTTTCAGAGGAATTGAGATAATTGAGCTGAAAATGGACTGCAGAGATACGGTATTGGAATCTAATTGTAATTTAAAGAACTCCCAAACTTTGAAAAATCTCCACATTATGGATTCTTGGAATCCCGGACTTTTTAGAATCACATCATAATTTAAATTTCCAAGTTTTCTAATCAGAAATTTTCGCCATTTCCCAGCTCCCCCTGGAGACATTATGATCAAAATTTTTATTTTCTACTTTTTCCAAGAATTCCCATTCCGGGATTCTYTGAAAAAAGGGACAACATGAAATAATGGGAAAACCAGAAAGCACTCAAGAAAAGAAATAAAAAATGGGAAAATGGACTACGGTAGTTTATGGGTCTTTTGAGAATCAAAAATCGGTGGTGGGAGTGTGAATAGAAAAGGAAATTGAAATAAGGTGGGCTTATTCAAAAATAATGTTTTTTCAGAAATTGGTTTGTATGAAACATGGTGGAGCTTCTGATCTCAAATCTGAAATATTGGAAAACACGAACATTTTCAGGCACATTACCGTATTTGCCCCAATCGAAAGCCACCCTATATGTGCAGCTTGATTATTTCGGTTCTTTTAAAAGATATCAACAAATTTTGAACTGATAAACTGTTTATCATAATATCACCAATGTTTTATCAGTTGGGATACTTTTAATATCTCTCATAGGAACCGAGATAATTGAGCTTAAAGTGCACGTATAAGGGGGGCTTCTATTTGAGCACATACGGTAATCAACCATATTTTGAGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTTTGAAAAATCTCCACATTA</pcr_primer_p1>
		<pcr_primer_p2>ATTTCTTTTCTTGAGTGCTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AACTTTGAAAAATCTCCACATTATGGATTCTTGGAATCCCGGACTTTTTAGAATCACATCATAATTTAAATTTCCAAGTTTTCTAATCAGAAATTTTCGCCATTTCCCAGCTCCCCCTGGAGACATTATGATCAAAATTTTTATTTTCTACTTTTTCCAAGAATTCCCATTCCGGGATTCTTTGAAAAAAGGGACAACATGAAATAATGGGAAAACCAGAAAGCACTCAAGAAAAGAAAT</canonical_amplicon>
		<polymorphic_amplicon>AACTTTGAAAAATCTCCACATTATGGATTCTTGGAATCCCGGACTTTTTAGAATCACATCATAATTTAAATTTCCAAGTTTTCTAATCAGAAATTTTCGCCATTTCCCAGCTCCCCCTGGAGACATTATGATCAAAATTTTTATTTTCTACTTTTTCCAAGAATTCCCATTCCGGGATTCTYTGAAAAAAGGGACAACATGAAATAATGGGAAAACCAGAAAGCACTCAAGAAAAGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22550</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>25959</contig_pos>
        <strand></strand>
        <context>YTGAAAAAAG[G/T]GACAACATGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATTTTCTACTTTTTCCAAGAATTCCCATTCCGGGATTCTTTGAAAAAAG</left_flank>
        <right_flank>GACAACATGAAATAATGGGAAAACCAGAAAGCACTCAAGAAAAGAAATAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAAAATTCGAAGTTCTATTTTCGTTTAGTATAACCTGAATATTTGCAGTGCAATGGAAAATTCTGAAACTTTTTTTCCGAATTTTCAGAAATACCGTATTCCTTCTGTCAACTTTGAGCTCAATTATCTCAATTCCAGTAAAAGATATCGAAAACTTGTCAAGTAATAAATTAGTTATCATAATATCAGCAATATTTTATCAGTGGACAAATTTCTGATATCTTTCAGAGGAATTGAGATAATTGAGCTGAAAATGGACTGCAGAGATACGGTATTGGAATCTAATTGTAATTTAAAGAACTCCCAAACTTTGAAAAATCTCCACATTATGGATTCTTGGAATCCCGGACTTTTTAGAATCACATCATAATTTAAATTTCCAAGTTTTCTAATCAGAAATTTTCGCCATTTCCCAGCTCCCCCTGGAGACATTATGATCAAAATTTTTATTTTCTACTTTTTCCAAGAATTCCCATTCCGGGATTCTTTGAAAAAAGGGACAACATGAAATAATGGGAAAACCAGAAAGCACTCAAGAAAAGAAATAAAAAATGGGAAAATGGACTACGGTAGTTTATGGGTCTTTTGAGAATCAAAAATCGGTGGTGGGAGTGTGAATAGAAAAGGAAATTGAAATAAGGTGGGCTTATTCAAAAATAATGTTTTTTCAGAAATTGGTTTGTATGAAACATGGTGGAGCTTCTGATCTCAAATCTGAAATATTGGAAAACACGAACATTTTCAGGCACATTACCGTATTTGCCCCAATCGAAAGCCACCCTATATGTGCAGCTTGATTATTTCGGTTCTTTTAAAAGATATCAACAAATTTTGAACTGATAAACTGTTTATCATAATATCACCAATGTTTTATCAGTTGGGATACTTTTAATATCTCTCATAGGAACCGAGATAATTGAGCTTAAAGTGCACGTATAAGGGGGGCTTCTATTTGAGCACATACGGTAATCAACCATATTTTGAGGAGCACTTGATTT</canonical>
            <polymorphic>ATAAAAATTCGAAGTTCTATTTTCGTTTAGTATAACCTGAATATTTGCAGTGCAATGGAAAATTCTGAAACTTTTTTTCCGAATTTTCAGAAATACCGTATTCCTTCTGTCAACTTTGAGCTCAATTATCTCAATTCCAGTAAAAGATATCGAAAACTTGTCAAGTAATAAATTAGTTATCATAATATCAGCAATATTTTATCAGTGGACAAATTTCTGATATCTTTCAGAGGAATTGAGATAATTGAGCTGAAAATGGACTGCAGAGATACGGTATTGGAATCTAATTGTAATTTAAAGAACTCCCAAACTTTGAAAAATCTCCACATTATGGATTCTTGGAATCCCGGACTTTTTAGAATCACATCATAATTTAAATTTCCAAGTTTTCTAATCAGAAATTTTCGCCATTTCCCAGCTCCCCCTGGAGACATTATGATCAAAATTTTTATTTTCTACTTTTTCCAAGAATTCCCATTCCGGGATTCTTTGAAAAAAGKGACAACATGAAATAATGGGAAAACCAGAAAGCACTCAAGAAAAGAAATAAAAAATGGGAAAATGGACTACGGTAGTTTATGGGTCTTTTGAGAATCAAAAATCGGTGGTGGGAGTGTGAATAGAAAAGGAAATTGAAATAAGGTGGGCTTATTCAAAAATAATGTTTTTTCAGAAATTGGTTTGTATGAAACATGGTGGAGCTTCTGATCTCAAATCTGAAATATTGGAAAACACGAACATTTTCAGGCACATTACCGTATTTGCCCCAATCGAAAGCCACCCTATATGTGCAGCTTGATTATTTCGGTTCTTTTAAAAGATATCAACAAATTTTGAACTGATAAACTGTTTATCATAATATCACCAATGTTTTATCAGTTGGGATACTTTTAATATCTCTCATAGGAACCGAGATAATTGAGCTTAAAGTGCACGTATAAGGGGGGCTTCTATTTGAGCACATACGGTAATCAACCATATTTTGAGGAGCACTTGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTATTTTCTACTTTTTCCAAGA</pcr_primer_p1>
		<pcr_primer_p2>CATGTTTCATACAAACCAATTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTATTTTCTACTTTTTCCAAGAATTCCCATTCCGGGATTCTTTGAAAAAAGGGACAACATGAAATAATGGGAAAACCAGAAAGCACTCAAGAAAAGAAATAAAAAATGGGAAAATGGACTACGGTAGTTTATGGGTCTTTTGAGAATCAAAAATCGGTGGTGGGAGTGTGAATAGAAAAGGAAATTGAAATAAGGTGGGCTTATTCAAAAATAATGTTTTTTCAGAAATTGGTTTGTATGAAACATG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTATTTTCTACTTTTTCCAAGAATTCCCATTCCGGGATTCTTTGAAAAAAGKGACAACATGAAATAATGGGAAAACCAGAAAGCACTCAAGAAAAGAAATAAAAAATGGGAAAATGGACTACGGTAGTTTATGGGTCTTTTGAGAATCAAAAATCGGTGGTGGGAGTGTGAATAGAAAAGGAAATTGAAATAAGGTGGGCTTATTCAAAAATAATGTTTTTTCAGAAATTGGTTTGTATGAAACATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22551</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>26008</contig_pos>
        <strand></strand>
        <context>GAAAAGAAAT[A/G]AAAAATGGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGACAACATGAAATAATGGGAAAACCAGAAAGCACTCAAGAAAAGAAAT</left_flank>
        <right_flank>AAAAATGGGAAAATGGACTACGGTAGTTTATGGGTCTTTTGAGAATCAAA</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGCAATGGAAAATTCTGAAACTTTTTTTCCGAATTTTCAGAAATACCGTATTCCTTCTGTCAACTTTGAGCTCAATTATCTCAATTCCAGTAAAAGATATCGAAAACTTGTCAAGTAATAAATTAGTTATCATAATATCAGCAATATTTTATCAGTGGACAAATTTCTGATATCTTTCAGAGGAATTGAGATAATTGAGCTGAAAATGGACTGCAGAGATACGGTATTGGAATCTAATTGTAATTTAAAGAACTCCCAAACTTTGAAAAATCTCCACATTATGGATTCTTGGAATCCCGGACTTTTTAGAATCACATCATAATTTAAATTTCCAAGTTTTCTAATCAGAAATTTTCGCCATTTCCCAGCTCCCCCTGGAGACATTATGATCAAAATTTTTATTTTCTACTTTTTCCAAGAATTCCCATTCCGGGATTCTTTGAAAAAAGGGACAACATGAAATAATGGGAAAACCAGAAAGCACTCAAGAAAAGAAATAAAAAATGGGAAAATGGACTACGGTAGTTTATGGGTCTTTTGAGAATCAAAAATCGGTGGTGGGAGTGTGAATAGAAAAGGAAATTGAAATAAGGTGGGCTTATTCAAAAATAATGTTTTTTCAGAAATTGGTTTGTATGAAACATGGTGGAGCTTCTGATCTCAAATCTGAAATATTGGAAAACACGAACATTTTCAGGCACATTACCGTATTTGCCCCAATCGAAAGCCACCCTATATGTGCAGCTTGATTATTTCGGTTCTTTTAAAAGATATCAACAAATTTTGAACTGATAAACTGTTTATCATAATATCACCAATGTTTTATCAGTTGGGATACTTTTAATATCTCTCATAGGAACCGAGATAATTGAGCTTAAAGTGCACGTATAAGGGGGGCTTCTATTTGAGCACATACGGTAATCAACCATATTTTGAGGAGCACTTGATTTTTGATGTGAAAACAAAACATTAACAAATAATAATATTGCCAATCTGCGT</canonical>
            <polymorphic>GTGCAATGGAAAATTCTGAAACTTTTTTTCCGAATTTTCAGAAATACCGTATTCCTTCTGTCAACTTTGAGCTCAATTATCTCAATTCCAGTAAAAGATATCGAAAACTTGTCAAGTAATAAATTAGTTATCATAATATCAGCAATATTTTATCAGTGGACAAATTTCTGATATCTTTCAGAGGAATTGAGATAATTGAGCTGAAAATGGACTGCAGAGATACGGTATTGGAATCTAATTGTAATTTAAAGAACTCCCAAACTTTGAAAAATCTCCACATTATGGATTCTTGGAATCCCGGACTTTTTAGAATCACATCATAATTTAAATTTCCAAGTTTTCTAATCAGAAATTTTCGCCATTTCCCAGCTCCCCCTGGAGACATTATGATCAAAATTTTTATTTTCTACTTTTTCCAAGAATTCCCATTCCGGGATTCTTTGAAAAAAGGGACAACATGAAATAATGGGAAAACCAGAAAGCACTCAAGAAAAGAAATRAAAAATGGGAAAATGGACTACGGTAGTTTATGGGTCTTTTGAGAATCAAAAATCGGTGGTGGGAGTGTGAATAGAAAAGGAAATTGAAATAAGGTGGGCTTATTCAAAAATAATGTTTTTTCAGAAATTGGTTTGTATGAAACATGGTGGAGCTTCTGATCTCAAATCTGAAATATTGGAAAACACGAACATTTTCAGGCACATTACCGTATTTGCCCCAATCGAAAGCCACCCTATATGTGCAGCTTGATTATTTCGGTTCTTTTAAAAGATATCAACAAATTTTGAACTGATAAACTGTTTATCATAATATCACCAATGTTTTATCAGTTGGGATACTTTTAATATCTCTCATAGGAACCGAGATAATTGAGCTTAAAGTGCACGTATAAGGGGGGCTTCTATTTGAGCACATACGGTAATCAACCATATTTTGAGGAGCACTTGATTTTTGATGTGAAAACAAAACATTAACAAATAATAATATTGCCAATCTGCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTATTTTCTACTTTTTCCAAGA</pcr_primer_p1>
		<pcr_primer_p2>CATGTTTCATACAAACCAATTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTATTTTCTACTTTTTCCAAGAATTCCCATTCCGGGATTCTTTGAAAAAAGGGACAACATGAAATAATGGGAAAACCAGAAAGCACTCAAGAAAAGAAATAAAAAATGGGAAAATGGACTACGGTAGTTTATGGGTCTTTTGAGAATCAAAAATCGGTGGTGGGAGTGTGAATAGAAAAGGAAATTGAAATAAGGTGGGCTTATTCAAAAATAATGTTTTTTCAGAAATTGGTTTGTATGAAACATG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTATTTTCTACTTTTTCCAAGAATTCCCATTCCGGGATTCTTTGAAAAAAGGGACAACATGAAATAATGGGAAAACCAGAAAGCACTCAAGAAAAGAAATRAAAAATGGGAAAATGGACTACGGTAGTTTATGGGTCTTTTGAGAATCAAAAATCGGTGGTGGGAGTGTGAATAGAAAAGGAAATTGAAATAAGGTGGGCTTATTCAAAAATAATGTTTTTTCAGAAATTGGTTTGTATGAAACATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22552</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>30546</contig_pos>
        <strand>+</strand>
        <context>AAAAGTTACA[A/G]AAGTTactgt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTTGAAAATTGAAGTTTCCGATGCAAAGCTTCCAACCTGAAAAGTTACA</left_flank>
        <right_flank>AAGTTACTGTAAACACTCTAATAGAAGGTCACTCAACCCTTCAACTTTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGATTTCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTTGTGATATTGTGATAAATAGTTTATTAGTTGACAAATTTTTTATATCTCTTACAGGAAATGAGATAATTGAGATTAAAGTTTACCGTTTTGGTGGGCTTCAGAATATACGGTAGTCAATTTGGATGTCTAAAAATTATAGTAGAATTTTTTGTATAAAACTGAAATTTTCAGAGTATACTAAACAAAAATAGAGCTTCAGTTTTGTAGTTGACAACTTTTTTGTACATATTGATTCAAGTGAGATATGCTGCTTCAAACCACGGTAAGTGGCAAAACTAGAACTTCCAGAACATTTGAATACTCACCAATTTTCAATCCAACCATATATGACGCTGGTATTCCTTCTGACATACTAATCAATGTGAAAGTGAACAGAGTCCAGGCAAGACGAGTTCTTGCAGACTTGAAAATTGAAGTTTCCGATGCAAAGCTTCCAACCTGAAAAGTTACAAAAGTTACTGTAAACACTCTAATAGAAGGTCACTCAACCCTTCAACTTTGAGCCCATATATCTCAATTCCTGTGAAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTCGCGGTATCTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATTTTCAATGATGACGAATCTCTCATTGACTAATGCACCAAATGCTTTTAACGAAAAGGTGCTTCGAAATTTCAAGTTCAATGAGGATTGCTGTACTTTTACGAGCTACATTAAGGGATTGTCTTCTTCGTTTTTCGGTTGGATTTCGAAATTGGAAATTTTAGGGACCAGAAAAATTCAAAAACTCACACTTTCCGCTCGATTCTTATAGCAATACAATGCGATCAGCACAAATGACAAGGTGATGATTGGAATGAGGAATGATAACGAAACTATGACAACTGGAAATAGGATTTTTCGGGGAGCCCTTGTTCTGCCAAACTCGAATTTTTA</canonical>
            <polymorphic>TCGATTTCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTTGTGATATTGTGATAAATAGTTTATTAGTTGACAAATTTTTTATATCTCTTACAGGAAATGAGATAATTGAGATTAAAGTTTACCGTTTTGGTGGGCTTCAGAATATACGGTAGTCAATTTGGATGTCTAAAAATTATAGTAGAATTTTTTGTATAAAACTGAAATTTTCAGAGTATACTAAACAAAAATAGAGCTTCAGTTTTGTAGTTGACAACTTTTTTGTACATATTGATTCAAGTGAGATATGCTGCTTCAAACCACGGTAAGTGGCAAAACTAGAACTTCCAGAACATTTGAATACTCACCAATTTTCAATCCAACCATATATGACGCTGGTATTCCTTCTGACATACTAATCAATGTGAAAGTGAACAGAGTCCAGGCAAGACGAGTTCTTGCAGACTTGAAAATTGAAGTTTCCGATGCAAAGCTTCCAACCTGAAAAGTTACARAAGTTACTGTAAACACTCTAATAGAAGGTCACTCAACCCTTCAACTTTGAGCCCATATATCTCAATTCCTGTGAAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTCGCGGTATCTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATTTTCAATGATGACGAATCTCTCATTGACTAATGCACCAAATGCTTTTAACGAAAAGGTGCTTCGAAATTTCAAGTTCAATGAGGATTGCTGTACTTTTACGAGCTACATTAAGGGATTGTCTTCTTCGTTTTTCGGTTGGATTTCGAAATTGGAAATTTTAGGGACCAGAAAAATTCAAAAACTCACACTTTCCGCTCGATTCTTATAGCAATACAATGCGATCAGCACAAATGACAAGGTGATGATTGGAATGAGGAATGATAACGAAACTATGACAACTGGAAATAGGATTTTTCGGGGAGCCCTTGTTCTGCCAAACTCGAATTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGACGAGTTCTTGCAGACTT</pcr_primer_p1>
		<pcr_primer_p2>CATCATTGAAAATTTTGATCTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGACGAGTTCTTGCAGACTTGAAAATTGAAGTTTCCGATGCAAAGCTTCCAACCTGAAAAGTTACAAAAGTTACTGTAAACACTCTAATAGAAGGTCACTCAACCCTTCAACTTTGAGCCCATATATCTCAATTCCTGTGAAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTCGCGGTATCTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATTTTCAATGATG</canonical_amplicon>
		<polymorphic_amplicon>AAGACGAGTTCTTGCAGACTTGAAAATTGAAGTTTCCGATGCAAAGCTTCCAACCTGAAAAGTTACARAAGTTACTGTAAACACTCTAATAGAAGGTCACTCAACCCTTCAACTTTGAGCCCATATATCTCAATTCCTGTGAAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTCGCGGTATCTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATTTTCAATGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22553</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>30831</contig_pos>
        <strand></strand>
        <context>ACATTAAGGG[A/G]TTGTCTTCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTCAAGTTCAATGAGGATTGCTGTACTTTTACGAGCTACATTAAGGG</left_flank>
        <right_flank>TTGTCTTCTTCGTTTTTCGGTTGGATTTCGAAATTGGAAATTTTAGGGAC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGAGATATGCTGCTTCAAACCACGGTAAGTGGCAAAACTAGAACTTCCAGAACATTTGAATACTCACCAATTTTCAATCCAACCATATATGACGCTGGTATTCCTTCTGACATACTAATCAATGTGAAAGTGAACAGAGTCCAGGCAAGACGAGTTCTTGCAGACTTGAAAATTGAAGTTTCCGATGCAAAGCTTCCAACCTGAAAAGTTACAAAAGTTACTGTAAACACTCTAATAGAAGGTCACTCAACCCTTCAACTTTGAGCCCATATATCTCAATTCCTGTGAAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTCGCGGTATCTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATTTTCAATGATGACGAATCTCTCATTGACTAATGCACCAAATGCTTTTAACGAAAAGGTGCTTCGAAATTTCAAGTTCAATGAGGATTGCTGTACTTTTACGAGCTACATTAAGGGATTGTCTTCTTCGTTTTTCGGTTGGATTTCGAAATTGGAAATTTTAGGGACCAGAAAAATTCAAAAACTCACACTTTCCGCTCGATTCTTATAGCAATACAATGCGATCAGCACAAATGACAAGGTGATGATTGGAATGAGGAATGATAACGAAACTATGACAACTGGAAATAGGATTTTTCGGGGAGCCCTTGTTCTGCCAAACTCGAATTTTTATGAGTTTTTAAAAACTAACAAAAATGAACCAAGTTATGAATATTTTTCCGAAAAGTCGAGGATCAGAGAAACCAGACACACTGCGTCTCTAACTCGAAAACTTAAATTCTGAGAATCATATGCATGTTTTTACTCATTTTGAAGCTCAAAGTTTAATGATCTCAAAAATCAGAAATTCATTCAATTTGGAGCCTTTTCAGCAAAGTTATAGTCATTTTTCTGATGTTTCAGCCTTAGCTTGCGCCATAAATTATTTTTCCCATGTCCCCCTCCTTTAAACTGAAC</canonical>
            <polymorphic>GTGAGATATGCTGCTTCAAACCACGGTAAGTGGCAAAACTAGAACTTCCAGAACATTTGAATACTCACCAATTTTCAATCCAACCATATATGACGCTGGTATTCCTTCTGACATACTAATCAATGTGAAAGTGAACAGAGTCCAGGCAAGACGAGTTCTTGCAGACTTGAAAATTGAAGTTTCCGATGCAAAGCTTCCAACCTGAAAAGTTACAAAAGTTACTGTAAACACTCTAATAGAAGGTCACTCAACCCTTCAACTTTGAGCCCATATATCTCAATTCCTGTGAAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTCGCGGTATCTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATTTTCAATGATGACGAATCTCTCATTGACTAATGCACCAAATGCTTTTAACGAAAAGGTGCTTCGAAATTTCAAGTTCAATGAGGATTGCTGTACTTTTACGAGCTACATTAAGGGRTTGTCTTCTTCGTTTTTCGGTTGGATTTCGAAATTGGAAATTTTAGGGACCAGAAAAATTCAAAAACTCACACTTTCCGCTCGATTCTTATAGCAATACAATGCGATCAGCACAAATGACAAGGTGATGATTGGAATGAGGAATGATAACGAAACTATGACAACTGGAAATAGGATTTTTCGGGGAGCCCTTGTTCTGCCAAACTCGAATTTTTATGAGTTTTTAAAAACTAACAAAAATGAACCAAGTTATGAATATTTTTCCGAAAAGTCGAGGATCAGAGAAACCAGACACACTGCGTCTCTAACTCGAAAACTTAAATTCTGAGAATCATATGCATGTTTTTACTCATTTTGAAGCTCAAAGTTTAATGATCTCAAAAATCAGAAATTCATTCAATTTGGAGCCTTTTCAGCAAAGTTATAGTCATTTTTCTGATGTTTCAGCCTTAGCTTGCGCCATAAATTATTTTTCCCATGTCCCCCTCCTTTAAACTGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTCAATGATGACGAATCT</pcr_primer_p1>
		<pcr_primer_p2>ATCATCACCTTGTCATTTGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTTTCAATGATGACGAATCTCTCATTGACTAATGCACCAAATGCTTTTAACGAAAAGGTGCTTCGAAATTTCAAGTTCAATGAGGATTGCTGTACTTTTACGAGCTACATTAAGGGATTGTCTTCTTCGTTTTTCGGTTGGATTTCGAAATTGGAAATTTTAGGGACCAGAAAAATTCAAAAACTCACACTTTCCGCTCGATTCTTATAGCAATACAATGCGATCAGCACAAATGACAAGGTGATGAT</canonical_amplicon>
		<polymorphic_amplicon>AATTTTCAATGATGACGAATCTCTCATTGACTAATGCACCAAATGCTTTTAACGAAAAGGTGCTTCGAAATTTCAAGTTCAATGAGGATTGCTGTACTTTTACGAGCTACATTAAGGGRTTGTCTTCTTCGTTTTTCGGTTGGATTTCGAAATTGGAAATTTTAGGGACCAGAAAAATTCAAAAACTCACACTTTCCGCTCGATTCTTATAGCAATACAATGCGATCAGCACAAATGACAAGGTGATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22554</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>30797</contig_pos>
        <strand></strand>
        <context>AAGTTCAATG[A/G]GGATTGCTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCACCAAATGCTTTTAACGAAAAGGTGCTTCGAAATTTCAAGTTCAATG</left_flank>
        <right_flank>GGATTGCTGTACTTTTACGAGCTACATTAAGGGATTGTCTTCTTCGTTTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAGTTGACAACTTTTTTGTACATATTGATTCAAGTGAGATATGCTGCTTCAAACCACGGTAAGTGGCAAAACTAGAACTTCCAGAACATTTGAATACTCACCAATTTTCAATCCAACCATATATGACGCTGGTATTCCTTCTGACATACTAATCAATGTGAAAGTGAACAGAGTCCAGGCAAGACGAGTTCTTGCAGACTTGAAAATTGAAGTTTCCGATGCAAAGCTTCCAACCTGAAAAGTTACAAAAGTTACTGTAAACACTCTAATAGAAGGTCACTCAACCCTTCAACTTTGAGCCCATATATCTCAATTCCTGTGAAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTCGCGGTATCTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATTTTCAATGATGACGAATCTCTCATTGACTAATGCACCAAATGCTTTTAACGAAAAGGTGCTTCGAAATTTCAAGTTCAATGAGGATTGCTGTACTTTTACGAGCTACATTAAGGGATTGTCTTCTTCGTTTTTCGGTTGGATTTCGAAATTGGAAATTTTAGGGACCAGAAAAATTCAAAAACTCACACTTTCCGCTCGATTCTTATAGCAATACAATGCGATCAGCACAAATGACAAGGTGATGATTGGAATGAGGAATGATAACGAAACTATGACAACTGGAAATAGGATTTTTCGGGGAGCCCTTGTTCTGCCAAACTCGAATTTTTATGAGTTTTTAAAAACTAACAAAAATGAACCAAGTTATGAATATTTTTCCGAAAAGTCGAGGATCAGAGAAACCAGACACACTGCGTCTCTAACTCGAAAACTTAAATTCTGAGAATCATATGCATGTTTTTACTCATTTTGAAGCTCAAAGTTTAATGATCTCAAAAATCAGAAATTCATTCAATTTGGAGCCTTTTCAGCAAAGTTATAGTCATTTTTCTGATGTTTCAGCCTTAGCTTGCGCCATAAAT</canonical>
            <polymorphic>GTAGTTGACAACTTTTTTGTACATATTGATTCAAGTGAGATATGCTGCTTCAAACCACGGTAAGTGGCAAAACTAGAACTTCCAGAACATTTGAATACTCACCAATTTTCAATCCAACCATATATGACGCTGGTATTCCTTCTGACATACTAATCAATGTGAAAGTGAACAGAGTCCAGGCAAGACGAGTTCTTGCAGACTTGAAAATTGAAGTTTCCGATGCAAAGCTTCCAACCTGAAAAGTTACAAAAGTTACTGTAAACACTCTAATAGAAGGTCACTCAACCCTTCAACTTTGAGCCCATATATCTCAATTCCTGTGAAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTCGCGGTATCTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATTTTCAATGATGACGAATCTCTCATTGACTAATGCACCAAATGCTTTTAACGAAAAGGTGCTTCGAAATTTCAAGTTCAATGRGGATTGCTGTACTTTTACGAGCTACATTAAGGGATTGTCTTCTTCGTTTTTCGGTTGGATTTCGAAATTGGAAATTTTAGGGACCAGAAAAATTCAAAAACTCACACTTTCCGCTCGATTCTTATAGCAATACAATGCGATCAGCACAAATGACAAGGTGATGATTGGAATGAGGAATGATAACGAAACTATGACAACTGGAAATAGGATTTTTCGGGGAGCCCTTGTTCTGCCAAACTCGAATTTTTATGAGTTTTTAAAAACTAACAAAAATGAACCAAGTTATGAATATTTTTCCGAAAAGTCGAGGATCAGAGAAACCAGACACACTGCGTCTCTAACTCGAAAACTTAAATTCTGAGAATCATATGCATGTTTTTACTCATTTTGAAGCTCAAAGTTTAATGATCTCAAAAATCAGAAATTCATTCAATTTGGAGCCTTTTCAGCAAAGTTATAGTCATTTTTCTGATGTTTCAGCCTTAGCTTGCGCCATAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTCAATGATGACGAATCT</pcr_primer_p1>
		<pcr_primer_p2>ATCATCACCTTGTCATTTGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTTTCAATGATGACGAATCTCTCATTGACTAATGCACCAAATGCTTTTAACGAAAAGGTGCTTCGAAATTTCAAGTTCAATGAGGATTGCTGTACTTTTACGAGCTACATTAAGGGATTGTCTTCTTCGTTTTTCGGTTGGATTTCGAAATTGGAAATTTTAGGGACCAGAAAAATTCAAAAACTCACACTTTCCGCTCGATTCTTATAGCAATACAATGCGATCAGCACAAATGACAAGGTGATGAT</canonical_amplicon>
		<polymorphic_amplicon>AATTTTCAATGATGACGAATCTCTCATTGACTAATGCACCAAATGCTTTTAACGAAAAGGTGCTTCGAAATTTCAAGTTCAATGRGGATTGCTGTACTTTTACGAGCTACATTAAGGGATTGTCTTCTTCGTTTTTCGGTTGGATTTCGAAATTGGAAATTTTAGGGACCAGAAAAATTCAAAAACTCACACTTTCCGCTCGATTCTTATAGCAATACAATGCGATCAGCACAAATGACAAGGTGATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22555</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>30784</contig_pos>
        <strand></strand>
        <context>GCTTCGAAAT[T/G]TCAAGTTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TCTCATTGACTAATGCACCAAATGCTTTTAACGAAAAGGTGCTTCGAAAT</left_flank>
        <right_flank>TCAAGTTCAATGAGGATTGCTGTACTTTTACGAGCTACATTAAGGGATTG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGCTTCAGTTTTGTAGTTGACAACTTTTTTGTACATATTGATTCAAGTGAGATATGCTGCTTCAAACCACGGTAAGTGGCAAAACTAGAACTTCCAGAACATTTGAATACTCACCAATTTTCAATCCAACCATATATGACGCTGGTATTCCTTCTGACATACTAATCAATGTGAAAGTGAACAGAGTCCAGGCAAGACGAGTTCTTGCAGACTTGAAAATTGAAGTTTCCGATGCAAAGCTTCCAACCTGAAAAGTTACAAAAGTTACTGTAAACACTCTAATAGAAGGTCACTCAACCCTTCAACTTTGAGCCCATATATCTCAATTCCTGTGAAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTCGCGGTATCTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATTTTCAATGATGACGAATCTCTCATTGACTAATGCACCAAATGCTTTTAACGAAAAGGTGCTTCGAAATTTCAAGTTCAATGAGGATTGCTGTACTTTTACGAGCTACATTAAGGGATTGTCTTCTTCGTTTTTCGGTTGGATTTCGAAATTGGAAATTTTAGGGACCAGAAAAATTCAAAAACTCACACTTTCCGCTCGATTCTTATAGCAATACAATGCGATCAGCACAAATGACAAGGTGATGATTGGAATGAGGAATGATAACGAAACTATGACAACTGGAAATAGGATTTTTCGGGGAGCCCTTGTTCTGCCAAACTCGAATTTTTATGAGTTTTTAAAAACTAACAAAAATGAACCAAGTTATGAATATTTTTCCGAAAAGTCGAGGATCAGAGAAACCAGACACACTGCGTCTCTAACTCGAAAACTTAAATTCTGAGAATCATATGCATGTTTTTACTCATTTTGAAGCTCAAAGTTTAATGATCTCAAAAATCAGAAATTCATTCAATTTGGAGCCTTTTCAGCAAAGTTATAGTCATTTTTCTGATGTTTCAGCCTTAGC</canonical>
            <polymorphic>GAGCTTCAGTTTTGTAGTTGACAACTTTTTTGTACATATTGATTCAAGTGAGATATGCTGCTTCAAACCACGGTAAGTGGCAAAACTAGAACTTCCAGAACATTTGAATACTCACCAATTTTCAATCCAACCATATATGACGCTGGTATTCCTTCTGACATACTAATCAATGTGAAAGTGAACAGAGTCCAGGCAAGACGAGTTCTTGCAGACTTGAAAATTGAAGTTTCCGATGCAAAGCTTCCAACCTGAAAAGTTACAAAAGTTACTGTAAACACTCTAATAGAAGGTCACTCAACCCTTCAACTTTGAGCCCATATATCTCAATTCCTGTGAAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTCGCGGTATCTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATTTTCAATGATGACGAATCTCTCATTGACTAATGCACCAAATGCTTTTAACGAAAAGGTGCTTCGAAATKTCAAGTTCAATGAGGATTGCTGTACTTTTACGAGCTACATTAAGGGATTGTCTTCTTCGTTTTTCGGTTGGATTTCGAAATTGGAAATTTTAGGGACCAGAAAAATTCAAAAACTCACACTTTCCGCTCGATTCTTATAGCAATACAATGCGATCAGCACAAATGACAAGGTGATGATTGGAATGAGGAATGATAACGAAACTATGACAACTGGAAATAGGATTTTTCGGGGAGCCCTTGTTCTGCCAAACTCGAATTTTTATGAGTTTTTAAAAACTAACAAAAATGAACCAAGTTATGAATATTTTTCCGAAAAGTCGAGGATCAGAGAAACCAGACACACTGCGTCTCTAACTCGAAAACTTAAATTCTGAGAATCATATGCATGTTTTTACTCATTTTGAAGCTCAAAGTTTAATGATCTCAAAAATCAGAAATTCATTCAATTTGGAGCCTTTTCAGCAAAGTTATAGTCATTTTTCTGATGTTTCAGCCTTAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>363 151 112 89 69 68 65 34 31 18</canonical_bands>
                <polymorphic_bands>363 157 151 112 69 65 34 31 18</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>151 116 112 107 102 82 69 68 56 34 31 30 18 9 8 7</canonical_bands>
                <polymorphic_bands>151 150 116 112 107 102 69 56 34 31 30 18 9 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTTCAATGATGACGAATCT</pcr_primer_p1>
		<pcr_primer_p2>ATCATCACCTTGTCATTTGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTTTCAATGATGACGAATCTCTCATTGACTAATGCACCAAATGCTTTTAACGAAAAGGTGCTTCGAAATTTCAAGTTCAATGAGGATTGCTGTACTTTTACGAGCTACATTAAGGGATTGTCTTCTTCGTTTTTCGGTTGGATTTCGAAATTGGAAATTTTAGGGACCAGAAAAATTCAAAAACTCACACTTTCCGCTCGATTCTTATAGCAATACAATGCGATCAGCACAAATGACAAGGTGATGAT</canonical_amplicon>
		<polymorphic_amplicon>AATTTTCAATGATGACGAATCTCTCATTGACTAATGCACCAAATGCTTTTAACGAAAAGGTGCTTCGAAATKTCAAGTTCAATGAGGATTGCTGTACTTTTACGAGCTACATTAAGGGATTGTCTTCTTCGTTTTTCGGTTGGATTTCGAAATTGGAAATTTTAGGGACCAGAAAAATTCAAAAACTCACACTTTCCGCTCGATTCTTATAGCAATACAATGCGATCAGCACAAATGACAAGGTGATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22557</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>30673</contig_pos>
        <strand></strand>
        <context>TTTYGCGRTA[T/C]CTCCAAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTCGCGGTA</left_flank>
        <right_flank>CTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATTTTCAATG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTACCGTTTTGGTGGGCTTCAGAATATACGGTAGTCAATTTGGATGTCTAAAAATTATAGTAGAATTTTTTGTATAAAACTGAAATTTTCAGAGTATACTAAACAAAAATAGAGCTTCAGTTTTGTAGTTGACAACTTTTTTGTACATATTGATTCAAGTGAGATATGCTGCTTCAAACCACGGTAAGTGGCAAAACTAGAACTTCCAGAACATTTGAATACTCACCAATTTTCAATCCAACCATATATGACGCTGGTATTCCTTCTGACATACTAATCAATGTGAAAGTGAACAGAGTCCAGGCAAGACGAGTTCTTGCAGACTTGAAAATTGAAGTTTCCGATGCAAAGCTTCCAACCTGAAAAGTTACAAAAGTTACTGTAAACACTCTAATAGAAGGTCACTCAACCCTTCAACTTTGAGCCCATATATCTCAATTCCTGTGAAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTCGCGGTATCTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATTTTCAATGATGACGAATCTCTCATTGACTAATGCACCAAATGCTTTTAACGAAAAGGTGCTTCGAAATTTCAAGTTCAATGAGGATTGCTGTACTTTTACGAGCTACATTAAGGGATTGTCTTCTTCGTTTTTCGGTTGGATTTCGAAATTGGAAATTTTAGGGACCAGAAAAATTCAAAAACTCACACTTTCCGCTCGATTCTTATAGCAATACAATGCGATCAGCACAAATGACAAGGTGATGATTGGAATGAGGAATGATAACGAAACTATGACAACTGGAAATAGGATTTTTCGGGGAGCCCTTGTTCTGCCAAACTCGAATTTTTATGAGTTTTTAAAAACTAACAAAAATGAACCAAGTTATGAATATTTTTCCGAAAAGTCGAGGATCAGAGAAACCAGACACACTGCGTCTCTAACTCGAAAACTTAAATTCTGAGAATCATATGCATGT</canonical>
            <polymorphic>TTACCGTTTTGGTGGGCTTCAGAATATACGGTAGTCAATTTGGATGTCTAAAAATTATAGTAGAATTTTTTGTATAAAACTGAAATTTTCAGAGTATACTAAACAAAAATAGAGCTTCAGTTTTGTAGTTGACAACTTTTTTGTACATATTGATTCAAGTGAGATATGCTGCTTCAAACCACGGTAAGTGGCAAAACTAGAACTTCCAGAACATTTGAATACTCACCAATTTTCAATCCAACCATATATGACGCTGGTATTCCTTCTGACATACTAATCAATGTGAAAGTGAACAGAGTCCAGGCAAGACGAGTTCTTGCAGACTTGAAAATTGAAGTTTCCGATGCAAAGCTTCCAACCTGAAAAGTTACAAAAGTTACTGTAAACACTCTAATAGAAGGTCACTCAACCCTTCAACTTTGAGCCCATATATCTCAATTCCTGTGAAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTCGCGGTAYCTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATTTTCAATGATGACGAATCTCTCATTGACTAATGCACCAAATGCTTTTAACGAAAAGGTGCTTCGAAATTTCAAGTTCAATGAGGATTGCTGTACTTTTACGAGCTACATTAAGGGATTGTCTTCTTCGTTTTTCGGTTGGATTTCGAAATTGGAAATTTTAGGGACCAGAAAAATTCAAAAACTCACACTTTCCGCTCGATTCTTATAGCAATACAATGCGATCAGCACAAATGACAAGGTGATGATTGGAATGAGGAATGATAACGAAACTATGACAACTGGAAATAGGATTTTTCGGGGAGCCCTTGTTCTGCCAAACTCGAATTTTTATGAGTTTTTAAAAACTAACAAAAATGAACCAAGTTATGAATATTTTTCCGAAAAGTCGAGGATCAGAGAAACCAGACACACTGCGTCTCTAACTCGAAAACTTAAATTCTGAGAATCATATGCATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGACGAGTTCTTGCAGACTT</pcr_primer_p1>
		<pcr_primer_p2>TCATCATTGAAAATTTTGATCTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGACGAGTTCTTGCAGACTTGAAAATTGAAGTTTCCGATGCAAAGCTTCCAACCTGAAAAGTTACAAAAGTTACTGTAAACACTCTAATAGAAGGTCACTCAACCCTTCAACTTTGAGCCCATATATCTCAATTCCTGTGAAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTCGCGGTATCTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATTTTCAATGATGA</canonical_amplicon>
		<polymorphic_amplicon>AAGACGAGTTCTTGCAGACTTGAAAATTGAAGTTTCCGATGCAAAGCTTCCAACCTGAAAAGTTACAAAAGTTACTGTAAACACTCTAATAGAAGGTCACTCAACCCTTCAACTTTGAGCCCATATATCTCAATTCCTGTGAAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTCGCGGTAYCTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATTTTCAATGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22558</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>30670</contig_pos>
        <strand></strand>
        <context>ATTTTTYGCG[G/A]TAYCTCCAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTCGCG</left_flank>
        <right_flank>TATCTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATTTTCA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTTACCGTTTTGGTGGGCTTCAGAATATACGGTAGTCAATTTGGATGTCTAAAAATTATAGTAGAATTTTTTGTATAAAACTGAAATTTTCAGAGTATACTAAACAAAAATAGAGCTTCAGTTTTGTAGTTGACAACTTTTTTGTACATATTGATTCAAGTGAGATATGCTGCTTCAAACCACGGTAAGTGGCAAAACTAGAACTTCCAGAACATTTGAATACTCACCAATTTTCAATCCAACCATATATGACGCTGGTATTCCTTCTGACATACTAATCAATGTGAAAGTGAACAGAGTCCAGGCAAGACGAGTTCTTGCAGACTTGAAAATTGAAGTTTCCGATGCAAAGCTTCCAACCTGAAAAGTTACAAAAGTTACTGTAAACACTCTAATAGAAGGTCACTCAACCCTTCAACTTTGAGCCCATATATCTCAATTCCTGTGAAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTCGCGGTATCTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATTTTCAATGATGACGAATCTCTCATTGACTAATGCACCAAATGCTTTTAACGAAAAGGTGCTTCGAAATTTCAAGTTCAATGAGGATTGCTGTACTTTTACGAGCTACATTAAGGGATTGTCTTCTTCGTTTTTCGGTTGGATTTCGAAATTGGAAATTTTAGGGACCAGAAAAATTCAAAAACTCACACTTTCCGCTCGATTCTTATAGCAATACAATGCGATCAGCACAAATGACAAGGTGATGATTGGAATGAGGAATGATAACGAAACTATGACAACTGGAAATAGGATTTTTCGGGGAGCCCTTGTTCTGCCAAACTCGAATTTTTATGAGTTTTTAAAAACTAACAAAAATGAACCAAGTTATGAATATTTTTCCGAAAAGTCGAGGATCAGAGAAACCAGACACACTGCGTCTCTAACTCGAAAACTTAAATTCTGAGAATCATATGCA</canonical>
            <polymorphic>AGTTTACCGTTTTGGTGGGCTTCAGAATATACGGTAGTCAATTTGGATGTCTAAAAATTATAGTAGAATTTTTTGTATAAAACTGAAATTTTCAGAGTATACTAAACAAAAATAGAGCTTCAGTTTTGTAGTTGACAACTTTTTTGTACATATTGATTCAAGTGAGATATGCTGCTTCAAACCACGGTAAGTGGCAAAACTAGAACTTCCAGAACATTTGAATACTCACCAATTTTCAATCCAACCATATATGACGCTGGTATTCCTTCTGACATACTAATCAATGTGAAAGTGAACAGAGTCCAGGCAAGACGAGTTCTTGCAGACTTGAAAATTGAAGTTTCCGATGCAAAGCTTCCAACCTGAAAAGTTACAAAAGTTACTGTAAACACTCTAATAGAAGGTCACTCAACCCTTCAACTTTGAGCCCATATATCTCAATTCCTGTGAAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTCGCGRTATCTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATTTTCAATGATGACGAATCTCTCATTGACTAATGCACCAAATGCTTTTAACGAAAAGGTGCTTCGAAATTTCAAGTTCAATGAGGATTGCTGTACTTTTACGAGCTACATTAAGGGATTGTCTTCTTCGTTTTTCGGTTGGATTTCGAAATTGGAAATTTTAGGGACCAGAAAAATTCAAAAACTCACACTTTCCGCTCGATTCTTATAGCAATACAATGCGATCAGCACAAATGACAAGGTGATGATTGGAATGAGGAATGATAACGAAACTATGACAACTGGAAATAGGATTTTTCGGGGAGCCCTTGTTCTGCCAAACTCGAATTTTTATGAGTTTTTAAAAACTAACAAAAATGAACCAAGTTATGAATATTTTTCCGAAAAGTCGAGGATCAGAGAAACCAGACACACTGCGTCTCTAACTCGAAAACTTAAATTCTGAGAATCATATGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGACGAGTTCTTGCAGACTT</pcr_primer_p1>
		<pcr_primer_p2>CATCATTGAAAATTTTGATCTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGACGAGTTCTTGCAGACTTGAAAATTGAAGTTTCCGATGCAAAGCTTCCAACCTGAAAAGTTACAAAAGTTACTGTAAACACTCTAATAGAAGGTCACTCAACCCTTCAACTTTGAGCCCATATATCTCAATTCCTGTGAAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTCGCGGTATCTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATTTTCAATGATG</canonical_amplicon>
		<polymorphic_amplicon>AAGACGAGTTCTTGCAGACTTGAAAATTGAAGTTTCCGATGCAAAGCTTCCAACCTGAAAAGTTACAAAAGTTACTGTAAACACTCTAATAGAAGGTCACTCAACCCTTCAACTTTGAGCCCATATATCTCAATTCCTGTGAAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTCGCGRTATCTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATTTTCAATGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22559</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>30666</contig_pos>
        <strand></strand>
        <context>TTCTATTTTT[C/T]GCGRTAYCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTGAAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTT</left_flank>
        <right_flank>GCGGTATCTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATT</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAAAGTTTACCGTTTTGGTGGGCTTCAGAATATACGGTAGTCAATTTGGATGTCTAAAAATTATAGTAGAATTTTTTGTATAAAACTGAAATTTTCAGAGTATACTAAACAAAAATAGAGCTTCAGTTTTGTAGTTGACAACTTTTTTGTACATATTGATTCAAGTGAGATATGCTGCTTCAAACCACGGTAAGTGGCAAAACTAGAACTTCCAGAACATTTGAATACTCACCAATTTTCAATCCAACCATATATGACGCTGGTATTCCTTCTGACATACTAATCAATGTGAAAGTGAACAGAGTCCAGGCAAGACGAGTTCTTGCAGACTTGAAAATTGAAGTTTCCGATGCAAAGCTTCCAACCTGAAAAGTTACAAAAGTTACTGTAAACACTCTAATAGAAGGTCACTCAACCCTTCAACTTTGAGCCCATATATCTCAATTCCTGTGAAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTCGCGGTATCTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATTTTCAATGATGACGAATCTCTCATTGACTAATGCACCAAATGCTTTTAACGAAAAGGTGCTTCGAAATTTCAAGTTCAATGAGGATTGCTGTACTTTTACGAGCTACATTAAGGGATTGTCTTCTTCGTTTTTCGGTTGGATTTCGAAATTGGAAATTTTAGGGACCAGAAAAATTCAAAAACTCACACTTTCCGCTCGATTCTTATAGCAATACAATGCGATCAGCACAAATGACAAGGTGATGATTGGAATGAGGAATGATAACGAAACTATGACAACTGGAAATAGGATTTTTCGGGGAGCCCTTGTTCTGCCAAACTCGAATTTTTATGAGTTTTTAAAAACTAACAAAAATGAACCAAGTTATGAATATTTTTCCGAAAAGTCGAGGATCAGAGAAACCAGACACACTGCGTCTCTAACTCGAAAACTTAAATTCTGAGAATCATA</canonical>
            <polymorphic>TTAAAGTTTACCGTTTTGGTGGGCTTCAGAATATACGGTAGTCAATTTGGATGTCTAAAAATTATAGTAGAATTTTTTGTATAAAACTGAAATTTTCAGAGTATACTAAACAAAAATAGAGCTTCAGTTTTGTAGTTGACAACTTTTTTGTACATATTGATTCAAGTGAGATATGCTGCTTCAAACCACGGTAAGTGGCAAAACTAGAACTTCCAGAACATTTGAATACTCACCAATTTTCAATCCAACCATATATGACGCTGGTATTCCTTCTGACATACTAATCAATGTGAAAGTGAACAGAGTCCAGGCAAGACGAGTTCTTGCAGACTTGAAAATTGAAGTTTCCGATGCAAAGCTTCCAACCTGAAAAGTTACAAAAGTTACTGTAAACACTCTAATAGAAGGTCACTCAACCCTTCAACTTTGAGCCCATATATCTCAATTCCTGTGAAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTYGCGGTATCTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATTTTCAATGATGACGAATCTCTCATTGACTAATGCACCAAATGCTTTTAACGAAAAGGTGCTTCGAAATTTCAAGTTCAATGAGGATTGCTGTACTTTTACGAGCTACATTAAGGGATTGTCTTCTTCGTTTTTCGGTTGGATTTCGAAATTGGAAATTTTAGGGACCAGAAAAATTCAAAAACTCACACTTTCCGCTCGATTCTTATAGCAATACAATGCGATCAGCACAAATGACAAGGTGATGATTGGAATGAGGAATGATAACGAAACTATGACAACTGGAAATAGGATTTTTCGGGGAGCCCTTGTTCTGCCAAACTCGAATTTTTATGAGTTTTTAAAAACTAACAAAAATGAACCAAGTTATGAATATTTTTCCGAAAAGTCGAGGATCAGAGAAACCAGACACACTGCGTCTCTAACTCGAAAACTTAAATTCTGAGAATCATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGACGAGTTCTTGCAGACTT</pcr_primer_p1>
		<pcr_primer_p2>CATCATTGAAAATTTTGATCTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGACGAGTTCTTGCAGACTTGAAAATTGAAGTTTCCGATGCAAAGCTTCCAACCTGAAAAGTTACAAAAGTTACTGTAAACACTCTAATAGAAGGTCACTCAACCCTTCAACTTTGAGCCCATATATCTCAATTCCTGTGAAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTCGCGGTATCTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATTTTCAATGATG</canonical_amplicon>
		<polymorphic_amplicon>AAGACGAGTTCTTGCAGACTTGAAAATTGAAGTTTCCGATGCAAAGCTTCCAACCTGAAAAGTTACAAAAGTTACTGTAAACACTCTAATAGAAGGTCACTCAACCCTTCAACTTTGAGCCCATATATCTCAATTCCTGTGAAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTYGCGGTATCTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATTTTCAATGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22560</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>56798</contig_pos>
        <strand>+</strand>
        <context>TTTCCTTATA[C/T]TCGAAAAATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGACTTTCCAGAAGATTTACAATTCAATGTTTTTAATTCTTTCCTTATA</left_flank>
        <right_flank>TCGAAAAATGAATTTTAAATTGAAAAATCTTACTTATTCGGTGCAACTGC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCCTAACTTTGAGCCAATTTTTCTCGGTTGTTGTCGAAGATATGAAAAAGTTATCAACAGGTAGATTGTTCATCATAATGTAAGAAGTGTTTTATCAGTTGACACCTTTTTGATATCCTGCATAGGAATTGAGATAATTGGGCTTAAAGTTGCCTAGTCGGCGGTTGCTAGCCGAGCTATGCGGTCGGCTGCCGACCACTTAGCTTTGAACTGAACTATCTCGGTTCTTTTGAAAGATATAAAAAATGTGTCCACTGATGAAATGTTGGTGATATTACGATAAACAATTTATCAGTTGGCAACTTATTTATATCTTCAACAGGAACCGAGAAAAATGGGCATGAAATTAAAAGTTGGGGCCATTATATTACAGGCTTTATGGTTAAAAAAACCAAAAAAGGTCTCAACAAAATTGTAAAATTACATCATTTTATTCTCTGGAAAAGTCGGACTTTCCAGAAGATTTACAATTCAATGTTTTTAATTCTTTCCTTATACTCGAAAAATGAATTTTAAATTGAAAAATCTTACTTATTCGGTGCAACTGCGGCTTTATACGGTTCCCATGGAACAATCCGTGTCTTTTTCTTCTTTCCATTACTATCCGGACTTGAACTTTCTGATGATTTTCGGTCCTCGGCTTCTTCTGATTTTTTATTATTGGTAAAGTGAACCTCATAGCTTTCTTCTGTAGCCAATGATAAGTCATGAGCATGGTATAAATCTAACAGGTCCATTTATTATTTAGTACATCAATGAATATGGAGAAAAAAGAAAGGGAAAAGGAGGTCGAGTCAATAAAAGGAAGGACTGGTGGCCGGGTAAAAGGAAGAAGACCGGCGCCTTCTCGGCCACCGACCTTCTTCTCTTATCGCAAAGAAAATAAGAAGAAGAAGAAGAAAAAGAAAATTTGACATATTTATTTTGAATGAGAAAACAGTTCTTTTTTGAGTTGATCATTTTGATTGAGCAGTTCGTTCATCTTCGACCAATTCAGA</canonical>
            <polymorphic>GCTCCTAACTTTGAGCCAATTTTTCTCGGTTGTTGTCGAAGATATGAAAAAGTTATCAACAGGTAGATTGTTCATCATAATGTAAGAAGTGTTTTATCAGTTGACACCTTTTTGATATCCTGCATAGGAATTGAGATAATTGGGCTTAAAGTTGCCTAGTCGGCGGTTGCTAGCCGAGCTATGCGGTCGGCTGCCGACCACTTAGCTTTGAACTGAACTATCTCGGTTCTTTTGAAAGATATAAAAAATGTGTCCACTGATGAAATGTTGGTGATATTACGATAAACAATTTATCAGTTGGCAACTTATTTATATCTTCAACAGGAACCGAGAAAAATGGGCATGAAATTAAAAGTTGGGGCCATTATATTACAGGCTTTATGGTTAAAAAAACCAAAAAAGGTCTCAACAAAATTGTAAAATTACATCATTTTATTCTCTGGAAAAGTCGGACTTTCCAGAAGATTTACAATTCAATGTTTTTAATTCTTTCCTTATAYTCGAAAAATGAATTTTAAATTGAAAAATCTTACTTATTCGGTGCAACTGCGGCTTTATACGGTTCCCATGGAACAATCCGTGTCTTTTTCTTCTTTCCATTACTATCCGGACTTGAACTTTCTGATGATTTTCGGTCCTCGGCTTCTTCTGATTTTTTATTATTGGTAAAGTGAACCTCATAGCTTTCTTCTGTAGCCAATGATAAGTCATGAGCATGGTATAAATCTAACAGGTCCATTTATTATTTAGTACATCAATGAATATGGAGAAAAAAGAAAGGGAAAAGGAGGTCGAGTCAATAAAAGGAAGGACTGGTGGCCGGGTAAAAGGAAGAAGACCGGCGCCTTCTCGGCCACCGACCTTCTTCTCTTATCGCAAAGAAAATAAGAAGAAGAAGAAGAAAAAGAAAATTTGACATATTTATTTTGAATGAGAAAACAGTTCTTTTTTGAGTTGATCATTTTGATTGAGCAGTTCGTTCATCTTCGACCAATTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGGTCTCAACAAAATTGTAA</pcr_primer_p1>
		<pcr_primer_p2>GAAAATCATCAGAAAGTTCAAGT</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>AAAAGGTCTCAACAAAATTGTAAAATTACATCATTTTATTCTCTGGAAAAGTCGGACTTTCCAGAAGATTTACAATTCAATGTTTTTAATTCTTTCCTTATACTCGAAAAATGAATTTTAAATTGAAAAATCTTACTTATTCGGTGCAACTGCGGCTTTATACGGTTCCCATGGAACAATCCGTGTCTTTTTCTTCTTTCCATTACTATCCGGACTTGAACTTTCTGATGATTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAGGTCTCAACAAAATTGTAAAATTACATCATTTTATTCTCTGGAAAAGTCGGACTTTCCAGAAGATTTACAATTCAATGTTTTTAATTCTTTCCTTATAYTCGAAAAATGAATTTTAAATTGAAAAATCTTACTTATTCGGTGCAACTGCGGCTTTATACGGTTCCCATGGAACAATCCGTGTCTTTTTCTTCTTTCCATTACTATCCGGACTTGAACTTTCTGATGATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22561</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>56985</contig_pos>
        <strand>+</strand>
        <context>CTCATAGCTT[C/T]CTTCTGTAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTCGGCTTCTTCTGATTTTTTATTATTGGTAAAGTGAACCTCATAGCTT</left_flank>
        <right_flank>CTTCTGTAGCCAATGATAAGTCATGAGCATGGTATAAATCTAACAGGTCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGCTGCCGACCACTTAGCTTTGAACTGAACTATCTCGGTTCTTTTGAAAGATATAAAAAATGTGTCCACTGATGAAATGTTGGTGATATTACGATAAACAATTTATCAGTTGGCAACTTATTTATATCTTCAACAGGAACCGAGAAAAATGGGCATGAAATTAAAAGTTGGGGCCATTATATTACAGGCTTTATGGTTAAAAAAACCAAAAAAGGTCTCAACAAAATTGTAAAATTACATCATTTTATTCTCTGGAAAAGTCGGACTTTCCAGAAGATTTACAATTCAATGTTTTTAATTCTTTCCTTATACTCGAAAAATGAATTTTAAATTGAAAAATCTTACTTATTCGGTGCAACTGCGGCTTTATACGGTTCCCATGGAACAATCCGTGTCTTTTTCTTCTTTCCATTACTATCCGGACTTGAACTTTCTGATGATTTTCGGTCCTCGGCTTCTTCTGATTTTTTATTATTGGTAAAGTGAACCTCATAGCTTTCTTCTGTAGCCAATGATAAGTCATGAGCATGGTATAAATCTAACAGGTCCATTTATTATTTAGTACATCAATGAATATGGAGAAAAAAGAAAGGGAAAAGGAGGTCGAGTCAATAAAAGGAAGGACTGGTGGCCGGGTAAAAGGAAGAAGACCGGCGCCTTCTCGGCCACCGACCTTCTTCTCTTATCGCAAAGAAAATAAGAAGAAGAAGAAGAAAAAGAAAATTTGACATATTTATTTTGAATGAGAAAACAGTTCTTTTTTGAGTTGATCATTTTGATTGAGCAGTTCGTTCATCTTCGACCAATTCAGATCCGTAACGCAAAACGAAAGCCTGAAAAAAAAGAAATAAAAATACTTATTGATTTTTCTATTCACCTTCACTTGTTCAGCCAGATTCTGCGCCGCAACGTCTACAGCGACATTCTTTGGAGCTTTCAATGCCAACTTGATTTCGCTGAAAACAGTGAACGACCTCAAAAACCAAAAATCCAAATATC</canonical>
            <polymorphic>CGGCTGCCGACCACTTAGCTTTGAACTGAACTATCTCGGTTCTTTTGAAAGATATAAAAAATGTGTCCACTGATGAAATGTTGGTGATATTACGATAAACAATTTATCAGTTGGCAACTTATTTATATCTTCAACAGGAACCGAGAAAAATGGGCATGAAATTAAAAGTTGGGGCCATTATATTACAGGCTTTATGGTTAAAAAAACCAAAAAAGGTCTCAACAAAATTGTAAAATTACATCATTTTATTCTCTGGAAAAGTCGGACTTTCCAGAAGATTTACAATTCAATGTTTTTAATTCTTTCCTTATACTCGAAAAATGAATTTTAAATTGAAAAATCTTACTTATTCGGTGCAACTGCGGCTTTATACGGTTCCCATGGAACAATCCGTGTCTTTTTCTTCTTTCCATTACTATCCGGACTTGAACTTTCTGATGATTTTCGGTCCTCGGCTTCTTCTGATTTTTTATTATTGGTAAAGTGAACCTCATAGCTTYCTTCTGTAGCCAATGATAAGTCATGAGCATGGTATAAATCTAACAGGTCCATTTATTATTTAGTACATCAATGAATATGGAGAAAAAAGAAAGGGAAAAGGAGGTCGAGTCAATAAAAGGAAGGACTGGTGGCCGGGTAAAAGGAAGAAGACCGGCGCCTTCTCGGCCACCGACCTTCTTCTCTTATCGCAAAGAAAATAAGAAGAAGAAGAAGAAAAAGAAAATTTGACATATTTATTTTGAATGAGAAAACAGTTCTTTTTTGAGTTGATCATTTTGATTGAGCAGTTCGTTCATCTTCGACCAATTCAGATCCGTAACGCAAAACGAAAGCCTGAAAAAAAAGAAATAAAAATACTTATTGATTTTTCTATTCACCTTCACTTGTTCAGCCAGATTCTGCGCCGCAACGTCTACAGCGACATTCTTTGGAGCTTTCAATGCCAACTTGATTTCGCTGAAAACAGTGAACGACCTCAAAAACCAAAAATCCAAATATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAATCCGTGTCTTTTTCTT</pcr_primer_p1>
		<pcr_primer_p2>CAGTCCTTCCTTTTATTGACTC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AACAATCCGTGTCTTTTTCTTCTTTCCATTACTATCCGGACTTGAACTTTCTGATGATTTTCGGTCCTCGGCTTCTTCTGATTTTTTATTATTGGTAAAGTGAACCTCATAGCTTTCTTCTGTAGCCAATGATAAGTCATGAGCATGGTATAAATCTAACAGGTCCATTTATTATTTAGTACATCAATGAATATGGAGAAAAAAGAAAGGGAAAAGGAGGTCGAGTCAATAAAAGGAAGGACTG</canonical_amplicon>
		<polymorphic_amplicon>AACAATCCGTGTCTTTTTCTTCTTTCCATTACTATCCGGACTTGAACTTTCTGATGATTTTCGGTCCTCGGCTTCTTCTGATTTTTTATTATTGGTAAAGTGAACCTCATAGCTTYCTTCTGTAGCCAATGATAAGTCATGAGCATGGTATAAATCTAACAGGTCCATTTATTATTTAGTACATCAATGAATATGGAGAAAAAAGAAAGGGAAAAGGAGGTCGAGTCAATAAAAGGAAGGACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22562</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>57048</contig_pos>
        <strand>+</strand>
        <context>TTATTATTTA[G/T]TAMATCAATG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGATAAGTCATGAGCATGGTATAAATCTAACAGGTCCATTTATTATTTA</left_flank>
        <right_flank>TACATCAATGAATATGGAGAAAAAAGAAAGGGAAAAGGAGGTCGAGTCAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTCCACTGATGAAATGTTGGTGATATTACGATAAACAATTTATCAGTTGGCAACTTATTTATATCTTCAACAGGAACCGAGAAAAATGGGCATGAAATTAAAAGTTGGGGCCATTATATTACAGGCTTTATGGTTAAAAAAACCAAAAAAGGTCTCAACAAAATTGTAAAATTACATCATTTTATTCTCTGGAAAAGTCGGACTTTCCAGAAGATTTACAATTCAATGTTTTTAATTCTTTCCTTATACTCGAAAAATGAATTTTAAATTGAAAAATCTTACTTATTCGGTGCAACTGCGGCTTTATACGGTTCCCATGGAACAATCCGTGTCTTTTTCTTCTTTCCATTACTATCCGGACTTGAACTTTCTGATGATTTTCGGTCCTCGGCTTCTTCTGATTTTTTATTATTGGTAAAGTGAACCTCATAGCTTTCTTCTGTAGCCAATGATAAGTCATGAGCATGGTATAAATCTAACAGGTCCATTTATTATTTAGTACATCAATGAATATGGAGAAAAAAGAAAGGGAAAAGGAGGTCGAGTCAATAAAAGGAAGGACTGGTGGCCGGGTAAAAGGAAGAAGACCGGCGCCTTCTCGGCCACCGACCTTCTTCTCTTATCGCAAAGAAAATAAGAAGAAGAAGAAGAAAAAGAAAATTTGACATATTTATTTTGAATGAGAAAACAGTTCTTTTTTGAGTTGATCATTTTGATTGAGCAGTTCGTTCATCTTCGACCAATTCAGATCCGTAACGCAAAACGAAAGCCTGAAAAAAAAGAAATAAAAATACTTATTGATTTTTCTATTCACCTTCACTTGTTCAGCCAGATTCTGCGCCGCAACGTCTACAGCGACATTCTTTGGAGCTTTCAATGCCAACTTGATTTCGCTGAAAACAGTGAACGACCTCAAAAACCAAAAATCCAAATATCTTACTATTGTCCCTGCTCCTTAACCTTATTTAGTGTCATCTGTGAAGACGTCGGCGCGGGTGG</canonical>
            <polymorphic>TGTCCACTGATGAAATGTTGGTGATATTACGATAAACAATTTATCAGTTGGCAACTTATTTATATCTTCAACAGGAACCGAGAAAAATGGGCATGAAATTAAAAGTTGGGGCCATTATATTACAGGCTTTATGGTTAAAAAAACCAAAAAAGGTCTCAACAAAATTGTAAAATTACATCATTTTATTCTCTGGAAAAGTCGGACTTTCCAGAAGATTTACAATTCAATGTTTTTAATTCTTTCCTTATACTCGAAAAATGAATTTTAAATTGAAAAATCTTACTTATTCGGTGCAACTGCGGCTTTATACGGTTCCCATGGAACAATCCGTGTCTTTTTCTTCTTTCCATTACTATCCGGACTTGAACTTTCTGATGATTTTCGGTCCTCGGCTTCTTCTGATTTTTTATTATTGGTAAAGTGAACCTCATAGCTTTCTTCTGTAGCCAATGATAAGTCATGAGCATGGTATAAATCTAACAGGTCCATTTATTATTTAKTACATCAATGAATATGGAGAAAAAAGAAAGGGAAAAGGAGGTCGAGTCAATAAAAGGAAGGACTGGTGGCCGGGTAAAAGGAAGAAGACCGGCGCCTTCTCGGCCACCGACCTTCTTCTCTTATCGCAAAGAAAATAAGAAGAAGAAGAAGAAAAAGAAAATTTGACATATTTATTTTGAATGAGAAAACAGTTCTTTTTTGAGTTGATCATTTTGATTGAGCAGTTCGTTCATCTTCGACCAATTCAGATCCGTAACGCAAAACGAAAGCCTGAAAAAAAAGAAATAAAAATACTTATTGATTTTTCTATTCACCTTCACTTGTTCAGCCAGATTCTGCGCCGCAACGTCTACAGCGACATTCTTTGGAGCTTTCAATGCCAACTTGATTTCGCTGAAAACAGTGAACGACCTCAAAAACCAAAAATCCAAATATCTTACTATTGTCCCTGCTCCTTAACCTTATTTAGTGTCATCTGTGAAGACGTCGGCGCGGGTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCTGTAGCCAATGATAAGTCA</pcr_primer_p1>
		<pcr_primer_p2>TTCTCATTCAAAATAAATATGTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCTGTAGCCAATGATAAGTCATGAGCATGGTATAAATCTAACAGGTCCATTTATTATTTAGTACATCAATGAATATGGAGAAAAAAGAAAGGGAAAAGGAGGTCGAGTCAATAAAAGGAAGGACTGGTGGCCGGGTAAAAGGAAGAAGACCGGCGCCTTCTCGGCCACCGACCTTCTTCTCTTATCGCAAAGAAAATAAGAAGAAGAAGAAGAAAAAGAAAATTTGACATATTTATTTTGAATGAGAA</canonical_amplicon>
		<polymorphic_amplicon>CTTCTGTAGCCAATGATAAGTCATGAGCATGGTATAAATCTAACAGGTCCATTTATTATTTAKTACATCAATGAATATGGAGAAAAAAGAAAGGGAAAAGGAGGTCGAGTCAATAAAAGGAAGGACTGGTGGCCGGGTAAAAGGAAGAAGACCGGCGCCTTCTCGGCCACCGACCTTCTTCTCTTATCGCAAAGAAAATAAGAAGAAGAAGAAGAAAAAGAAAATTTGACATATTTATTTTGAATGAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22563</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>57051</contig_pos>
        <strand>+</strand>
        <context>TTATTTAKTA[A/C]ATCAATGAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATAAGTCATGAGCATGGTATAAATCTAACAGGTCCATTTATTATTTAGTA</left_flank>
        <right_flank>ATCAATGAATATGGAGAAAAAAGAAAGGGAAAAGGAGGTCGAGTCAATAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCACTGATGAAATGTTGGTGATATTACGATAAACAATTTATCAGTTGGCAACTTATTTATATCTTCAACAGGAACCGAGAAAAATGGGCATGAAATTAAAAGTTGGGGCCATTATATTACAGGCTTTATGGTTAAAAAAACCAAAAAAGGTCTCAACAAAATTGTAAAATTACATCATTTTATTCTCTGGAAAAGTCGGACTTTCCAGAAGATTTACAATTCAATGTTTTTAATTCTTTCCTTATACTCGAAAAATGAATTTTAAATTGAAAAATCTTACTTATTCGGTGCAACTGCGGCTTTATACGGTTCCCATGGAACAATCCGTGTCTTTTTCTTCTTTCCATTACTATCCGGACTTGAACTTTCTGATGATTTTCGGTCCTCGGCTTCTTCTGATTTTTTATTATTGGTAAAGTGAACCTCATAGCTTTCTTCTGTAGCCAATGATAAGTCATGAGCATGGTATAAATCTAACAGGTCCATTTATTATTTAGTACATCAATGAATATGGAGAAAAAAGAAAGGGAAAAGGAGGTCGAGTCAATAAAAGGAAGGACTGGTGGCCGGGTAAAAGGAAGAAGACCGGCGCCTTCTCGGCCACCGACCTTCTTCTCTTATCGCAAAGAAAATAAGAAGAAGAAGAAGAAAAAGAAAATTTGACATATTTATTTTGAATGAGAAAACAGTTCTTTTTTGAGTTGATCATTTTGATTGAGCAGTTCGTTCATCTTCGACCAATTCAGATCCGTAACGCAAAACGAAAGCCTGAAAAAAAAGAAATAAAAATACTTATTGATTTTTCTATTCACCTTCACTTGTTCAGCCAGATTCTGCGCCGCAACGTCTACAGCGACATTCTTTGGAGCTTTCAATGCCAACTTGATTTCGCTGAAAACAGTGAACGACCTCAAAAACCAAAAATCCAAATATCTTACTATTGTCCCTGCTCCTTAACCTTATTTAGTGTCATCTGTGAAGACGTCGGCGCGGGTGGAAC</canonical>
            <polymorphic>CCACTGATGAAATGTTGGTGATATTACGATAAACAATTTATCAGTTGGCAACTTATTTATATCTTCAACAGGAACCGAGAAAAATGGGCATGAAATTAAAAGTTGGGGCCATTATATTACAGGCTTTATGGTTAAAAAAACCAAAAAAGGTCTCAACAAAATTGTAAAATTACATCATTTTATTCTCTGGAAAAGTCGGACTTTCCAGAAGATTTACAATTCAATGTTTTTAATTCTTTCCTTATACTCGAAAAATGAATTTTAAATTGAAAAATCTTACTTATTCGGTGCAACTGCGGCTTTATACGGTTCCCATGGAACAATCCGTGTCTTTTTCTTCTTTCCATTACTATCCGGACTTGAACTTTCTGATGATTTTCGGTCCTCGGCTTCTTCTGATTTTTTATTATTGGTAAAGTGAACCTCATAGCTTTCTTCTGTAGCCAATGATAAGTCATGAGCATGGTATAAATCTAACAGGTCCATTTATTATTTAGTAMATCAATGAATATGGAGAAAAAAGAAAGGGAAAAGGAGGTCGAGTCAATAAAAGGAAGGACTGGTGGCCGGGTAAAAGGAAGAAGACCGGCGCCTTCTCGGCCACCGACCTTCTTCTCTTATCGCAAAGAAAATAAGAAGAAGAAGAAGAAAAAGAAAATTTGACATATTTATTTTGAATGAGAAAACAGTTCTTTTTTGAGTTGATCATTTTGATTGAGCAGTTCGTTCATCTTCGACCAATTCAGATCCGTAACGCAAAACGAAAGCCTGAAAAAAAAGAAATAAAAATACTTATTGATTTTTCTATTCACCTTCACTTGTTCAGCCAGATTCTGCGCCGCAACGTCTACAGCGACATTCTTTGGAGCTTTCAATGCCAACTTGATTTCGCTGAAAACAGTGAACGACCTCAAAAACCAAAAATCCAAATATCTTACTATTGTCCCTGCTCCTTAACCTTATTTAGTGTCATCTGTGAAGACGTCGGCGCGGGTGGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCTGTAGCCAATGATAAGTCA</pcr_primer_p1>
		<pcr_primer_p2>TTCTCATTCAAAATAAATATGTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCTGTAGCCAATGATAAGTCATGAGCATGGTATAAATCTAACAGGTCCATTTATTATTTAGTACATCAATGAATATGGAGAAAAAAGAAAGGGAAAAGGAGGTCGAGTCAATAAAAGGAAGGACTGGTGGCCGGGTAAAAGGAAGAAGACCGGCGCCTTCTCGGCCACCGACCTTCTTCTCTTATCGCAAAGAAAATAAGAAGAAGAAGAAGAAAAAGAAAATTTGACATATTTATTTTGAATGAGAA</canonical_amplicon>
		<polymorphic_amplicon>CTTCTGTAGCCAATGATAAGTCATGAGCATGGTATAAATCTAACAGGTCCATTTATTATTTAGTAMATCAATGAATATGGAGAAAAAAGAAAGGGAAAAGGAGGTCGAGTCAATAAAAGGAAGGACTGGTGGCCGGGTAAAAGGAAGAAGACCGGCGCCTTCTCGGCCACCGACCTTCTTCTCTTATCGCAAAGAAAATAAGAAGAAGAAGAAGAAAAAGAAAATTTGACATATTTATTTTGAATGAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22588</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>59727</contig_pos>
        <strand>+</strand>
        <context>GATTTTWWCA[C/T]GAAATTTCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTATCGACTATGAATGCTTTCCTGAACACAATATTTTCGATTTTTTCA</left_flank>
        <right_flank>GAAATTTCATGAAATTAATCAGCTTACATGCACTGATATATGATTACAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGCCAACACTTCTTCTGTCAGATGTTCGACTGTTTTCTTCGCTGTCATTATTTCTCTTTCTATCTCTTCTATTTGCTGAATCAATTCTGTTTTCTGCTTCTCAATATCTTCTGTTCTCTCCACAACATCTGTGTACTGATTGACAACGCCAGCCAATTCACTTTTACATTTACTATGCTCGTTCATCAGCTCGTTCTCTCGACGCTTCCGCAAACTTTGTTTCGAAATCAAGTCATTTTTGCGTTTCTCCGCCTGAATGATCTCATCCTGCATGCGCTCCATCTCTTGCTTCTGCTCGCTGAATTCGTCACTGATTTCGTTGAACATTGGAGCAGACATCTCGTGAAGTTTGATGAAATCGACTAGGAAACTCGTGAGTCTTCTGAATCGATTCGGTTGTTTTTCAGGTGTCACCAAATCGCACATCGTCAATCCAACTTTCTGTCAGAATTATCGACTATGAATGCTTTCCTGAACACAATATTTTCGATTTTTTCATGAAATTTCATGAAATTAATCAGCTTACATGCACTGATATATGATTACAAGTGGAATAGTCTTTTTGTGCAGTTCTGGATCATGACCACTGTCTGCCGACAACGGGAGCGTTAACAAGCTCTGCTCGGAGACGTTGAGGATGTAGCGGATGAAGTTGGAGAAAATTGATTGTGCGACTTCAGCCTGAAAATTAAGAATCTTAAAATGAAATGGAAGGAAGAACTTACATCTGGATTTAAAATGCTGTCAGCTGTTAGTCCGAGTCCCAGCTTTTGTTGCAGAACTTTGGCGATCAACCGAGTGTCATACTGGATTAGTATGACGGATTTAGCGTTCGACATATTTATTAAAGTGTTAAACACTCATAAAAGAGCGAATTCGGTGATAAAACGTGGGGAAAGGCTCCGAAAATGATGGCTGACTCGAACGAGTTACTTGGCCTGTTTTGAATTCTCCACCGAGCGCGCCAAAACAGCGGGTGGTTGCTAGGCCACGCACCAG</canonical>
            <polymorphic>ATGCCAACACTTCTTCTGTCAGATGTTCGACTGTTTTCTTCGCTGTCATTATTTCTCTTTCTATCTCTTCTATTTGCTGAATCAATTCTGTTTTCTGCTTCTCAATATCTTCTGTTCTCTCCACAACATCTGTGTACTGATTGACAACGCCAGCCAATTCACTTTTACATTTACTATGCTCGTTCATCAGCTCGTTCTCTCGACGCTTCCGCAAACTTTGTTTCGAAATCAAGTCATTTTTGCGTTTCTCCGCCTGAATGATCTCATCCTGCATGCGCTCCATCTCTTGCTTCTGCTCGCTGAATTCGTCACTGATTTCGTTGAACATTGGAGCAGACATCTCGTGAAGTTTGATGAAATCGACTAGGAAACTCGTGAGTCTTCTGAATCGATTCGGTTGTTTTTCAGGTGTCACCAAATCGCACATCGTCAATCCAACTTTCTGTCAGAATTATCGACTATGAATGCTTTCCTGAACACAATATTTTCGATTTTTTCAYGAAATTTCATGAAATTAATCAGCTTACATGCACTGATATATGATTACAAGTGGAATAGTCTTTTTGTGCAGTTCTGGATCATGACCACTGTCTGCCGACAACGGGAGCGTTAACAAGCTCTGCTCGGAGACGTTGAGGATGTAGCGGATGAAGTTGGAGAAAATTGATTGTGCGACTTCAGCCTGAAAATTAAGAATCTTAAAATGAAATGGAAGGAAGAACTTACATCTGGATTTAAAATGCTGTCAGCTGTTAGTCCGAGTCCCAGCTTTTGTTGCAGAACTTTGGCGATCAACCGAGTGTCATACTGGATTAGTATGACGGATTTAGCGTTCGACATATTTATTAAAGTGTTAAACACTCATAAAAGAGCGAATTCGGTGATAAAACGTGGGGAAAGGCTCCGAAAATGATGGCTGACTCGAACGAGTTACTTGGCCTGTTTTGAATTCTCCACCGAGCGCGCCAAAACAGCGGGTGGTTGCTAGGCCACGCACCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>497 421 72 10</canonical_bands>
                <polymorphic_bands>507 421 72</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>420 272 226 53 19 10</canonical_bands>
                <polymorphic_bands>420 272 236 53 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATCGTCAATCCAACTTTCT</pcr_primer_p1>
		<pcr_primer_p2>ACAATCAATTTTCTCCAACTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACATCGTCAATCCAACTTTCTGTCAGAATTATCGACTATGAATGCTTTCCTGAACACAATATTTTCGATTTTTTCATGAAATTTCATGAAATTAATCAGCTTACATGCACTGATATATGATTACAAGTGGAATAGTCTTTTTGTGCAGTTCTGGATCATGACCACTGTCTGCCGACAACGGGAGCGTTAACAAGCTCTGCTCGGAGACGTTGAGGATGTAGCGGATGAAGTTGGAGAAAATTGATTGT</canonical_amplicon>
		<polymorphic_amplicon>ACATCGTCAATCCAACTTTCTGTCAGAATTATCGACTATGAATGCTTTCCTGAACACAATATTTTCGATTTTTTCAYGAAATTTCATGAAATTAATCAGCTTACATGCACTGATATATGATTACAAGTGGAATAGTCTTTTTGTGCAGTTCTGGATCATGACCACTGTCTGCCGACAACGGGAGCGTTAACAAGCTCTGCTCGGAGACGTTGAGGATGTAGCGGATGAAGTTGGAGAAAATTGATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22591</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>59724</contig_pos>
        <strand>+</strand>
        <context>TTCGATTTTW[A/T]CAYGAAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGAATTATCGACTATGAATGCTTTCCTGAACACAATATTTTCGATTTTT</left_flank>
        <right_flank>CATGAAATTTCATGAAATTAATCAGCTTACATGCACTGATATATGATTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGATGCCAACACTTCTTCTGTCAGATGTTCGACTGTTTTCTTCGCTGTCATTATTTCTCTTTCTATCTCTTCTATTTGCTGAATCAATTCTGTTTTCTGCTTCTCAATATCTTCTGTTCTCTCCACAACATCTGTGTACTGATTGACAACGCCAGCCAATTCACTTTTACATTTACTATGCTCGTTCATCAGCTCGTTCTCTCGACGCTTCCGCAAACTTTGTTTCGAAATCAAGTCATTTTTGCGTTTCTCCGCCTGAATGATCTCATCCTGCATGCGCTCCATCTCTTGCTTCTGCTCGCTGAATTCGTCACTGATTTCGTTGAACATTGGAGCAGACATCTCGTGAAGTTTGATGAAATCGACTAGGAAACTCGTGAGTCTTCTGAATCGATTCGGTTGTTTTTCAGGTGTCACCAAATCGCACATCGTCAATCCAACTTTCTGTCAGAATTATCGACTATGAATGCTTTCCTGAACACAATATTTTCGATTTTTTCATGAAATTTCATGAAATTAATCAGCTTACATGCACTGATATATGATTACAAGTGGAATAGTCTTTTTGTGCAGTTCTGGATCATGACCACTGTCTGCCGACAACGGGAGCGTTAACAAGCTCTGCTCGGAGACGTTGAGGATGTAGCGGATGAAGTTGGAGAAAATTGATTGTGCGACTTCAGCCTGAAAATTAAGAATCTTAAAATGAAATGGAAGGAAGAACTTACATCTGGATTTAAAATGCTGTCAGCTGTTAGTCCGAGTCCCAGCTTTTGTTGCAGAACTTTGGCGATCAACCGAGTGTCATACTGGATTAGTATGACGGATTTAGCGTTCGACATATTTATTAAAGTGTTAAACACTCATAAAAGAGCGAATTCGGTGATAAAACGTGGGGAAAGGCTCCGAAAATGATGGCTGACTCGAACGAGTTACTTGGCCTGTTTTGAATTCTCCACCGAGCGCGCCAAAACAGCGGGTGGTTGCTAGGCCACGCAC</canonical>
            <polymorphic>GTGATGCCAACACTTCTTCTGTCAGATGTTCGACTGTTTTCTTCGCTGTCATTATTTCTCTTTCTATCTCTTCTATTTGCTGAATCAATTCTGTTTTCTGCTTCTCAATATCTTCTGTTCTCTCCACAACATCTGTGTACTGATTGACAACGCCAGCCAATTCACTTTTACATTTACTATGCTCGTTCATCAGCTCGTTCTCTCGACGCTTCCGCAAACTTTGTTTCGAAATCAAGTCATTTTTGCGTTTCTCCGCCTGAATGATCTCATCCTGCATGCGCTCCATCTCTTGCTTCTGCTCGCTGAATTCGTCACTGATTTCGTTGAACATTGGAGCAGACATCTCGTGAAGTTTGATGAAATCGACTAGGAAACTCGTGAGTCTTCTGAATCGATTCGGTTGTTTTTCAGGTGTCACCAAATCGCACATCGTCAATCCAACTTTCTGTCAGAATTATCGACTATGAATGCTTTCCTGAACACAATATTTTCGATTTTTWCATGAAATTTCATGAAATTAATCAGCTTACATGCACTGATATATGATTACAAGTGGAATAGTCTTTTTGTGCAGTTCTGGATCATGACCACTGTCTGCCGACAACGGGAGCGTTAACAAGCTCTGCTCGGAGACGTTGAGGATGTAGCGGATGAAGTTGGAGAAAATTGATTGTGCGACTTCAGCCTGAAAATTAAGAATCTTAAAATGAAATGGAAGGAAGAACTTACATCTGGATTTAAAATGCTGTCAGCTGTTAGTCCGAGTCCCAGCTTTTGTTGCAGAACTTTGGCGATCAACCGAGTGTCATACTGGATTAGTATGACGGATTTAGCGTTCGACATATTTATTAAAGTGTTAAACACTCATAAAAGAGCGAATTCGGTGATAAAACGTGGGGAAAGGCTCCGAAAATGATGGCTGACTCGAACGAGTTACTTGGCCTGTTTTGAATTCTCCACCGAGCGCGCCAAAACAGCGGGTGGTTGCTAGGCCACGCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 418 72 10</canonical_bands>
                <polymorphic_bands>510 418 72</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>268 202 149 144 98 66 31 26 10 6</canonical_bands>
                <polymorphic_bands>268 202 149 144 98 66 36 31 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATCGTCAATCCAACTTTCT</pcr_primer_p1>
		<pcr_primer_p2>ACAATCAATTTTCTCCAACTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACATCGTCAATCCAACTTTCTGTCAGAATTATCGACTATGAATGCTTTCCTGAACACAATATTTTCGATTTTTTCATGAAATTTCATGAAATTAATCAGCTTACATGCACTGATATATGATTACAAGTGGAATAGTCTTTTTGTGCAGTTCTGGATCATGACCACTGTCTGCCGACAACGGGAGCGTTAACAAGCTCTGCTCGGAGACGTTGAGGATGTAGCGGATGAAGTTGGAGAAAATTGATTGT</canonical_amplicon>
		<polymorphic_amplicon>ACATCGTCAATCCAACTTTCTGTCAGAATTATCGACTATGAATGCTTTCCTGAACACAATATTTTCGATTTTTWCATGAAATTTCATGAAATTAATCAGCTTACATGCACTGATATATGATTACAAGTGGAATAGTCTTTTTGTGCAGTTCTGGATCATGACCACTGTCTGCCGACAACGGGAGCGTTAACAAGCTCTGCTCGGAGACGTTGAGGATGTAGCGGATGAAGTTGGAGAAAATTGATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22592</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>59723</contig_pos>
        <strand>+</strand>
        <context>TTTCGATTTT[A/T]WCAYGAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAGAATTATCGACTATGAATGCTTTCCTGAACACAATATTTTCGATTTT</left_flank>
        <right_flank>TCATGAAATTTCATGAAATTAATCAGCTTACATGCACTGATATATGATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGATGCCAACACTTCTTCTGTCAGATGTTCGACTGTTTTCTTCGCTGTCATTATTTCTCTTTCTATCTCTTCTATTTGCTGAATCAATTCTGTTTTCTGCTTCTCAATATCTTCTGTTCTCTCCACAACATCTGTGTACTGATTGACAACGCCAGCCAATTCACTTTTACATTTACTATGCTCGTTCATCAGCTCGTTCTCTCGACGCTTCCGCAAACTTTGTTTCGAAATCAAGTCATTTTTGCGTTTCTCCGCCTGAATGATCTCATCCTGCATGCGCTCCATCTCTTGCTTCTGCTCGCTGAATTCGTCACTGATTTCGTTGAACATTGGAGCAGACATCTCGTGAAGTTTGATGAAATCGACTAGGAAACTCGTGAGTCTTCTGAATCGATTCGGTTGTTTTTCAGGTGTCACCAAATCGCACATCGTCAATCCAACTTTCTGTCAGAATTATCGACTATGAATGCTTTCCTGAACACAATATTTTCGATTTTTTCATGAAATTTCATGAAATTAATCAGCTTACATGCACTGATATATGATTACAAGTGGAATAGTCTTTTTGTGCAGTTCTGGATCATGACCACTGTCTGCCGACAACGGGAGCGTTAACAAGCTCTGCTCGGAGACGTTGAGGATGTAGCGGATGAAGTTGGAGAAAATTGATTGTGCGACTTCAGCCTGAAAATTAAGAATCTTAAAATGAAATGGAAGGAAGAACTTACATCTGGATTTAAAATGCTGTCAGCTGTTAGTCCGAGTCCCAGCTTTTGTTGCAGAACTTTGGCGATCAACCGAGTGTCATACTGGATTAGTATGACGGATTTAGCGTTCGACATATTTATTAAAGTGTTAAACACTCATAAAAGAGCGAATTCGGTGATAAAACGTGGGGAAAGGCTCCGAAAATGATGGCTGACTCGAACGAGTTACTTGGCCTGTTTTGAATTCTCCACCGAGCGCGCCAAAACAGCGGGTGGTTGCTAGGCCACGCA</canonical>
            <polymorphic>GGTGATGCCAACACTTCTTCTGTCAGATGTTCGACTGTTTTCTTCGCTGTCATTATTTCTCTTTCTATCTCTTCTATTTGCTGAATCAATTCTGTTTTCTGCTTCTCAATATCTTCTGTTCTCTCCACAACATCTGTGTACTGATTGACAACGCCAGCCAATTCACTTTTACATTTACTATGCTCGTTCATCAGCTCGTTCTCTCGACGCTTCCGCAAACTTTGTTTCGAAATCAAGTCATTTTTGCGTTTCTCCGCCTGAATGATCTCATCCTGCATGCGCTCCATCTCTTGCTTCTGCTCGCTGAATTCGTCACTGATTTCGTTGAACATTGGAGCAGACATCTCGTGAAGTTTGATGAAATCGACTAGGAAACTCGTGAGTCTTCTGAATCGATTCGGTTGTTTTTCAGGTGTCACCAAATCGCACATCGTCAATCCAACTTTCTGTCAGAATTATCGACTATGAATGCTTTCCTGAACACAATATTTTCGATTTTWTCATGAAATTTCATGAAATTAATCAGCTTACATGCACTGATATATGATTACAAGTGGAATAGTCTTTTTGTGCAGTTCTGGATCATGACCACTGTCTGCCGACAACGGGAGCGTTAACAAGCTCTGCTCGGAGACGTTGAGGATGTAGCGGATGAAGTTGGAGAAAATTGATTGTGCGACTTCAGCCTGAAAATTAAGAATCTTAAAATGAAATGGAAGGAAGAACTTACATCTGGATTTAAAATGCTGTCAGCTGTTAGTCCGAGTCCCAGCTTTTGTTGCAGAACTTTGGCGATCAACCGAGTGTCATACTGGATTAGTATGACGGATTTAGCGTTCGACATATTTATTAAAGTGTTAAACACTCATAAAAGAGCGAATTCGGTGATAAAACGTGGGGAAAGGCTCCGAAAATGATGGCTGACTCGAACGAGTTACTTGGCCTGTTTTGAATTCTCCACCGAGCGCGCCAAAACAGCGGGTGGTTGCTAGGCCACGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATCGTCAATCCAACTTTCT</pcr_primer_p1>
		<pcr_primer_p2>ACAATCAATTTTCTCCAACTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACATCGTCAATCCAACTTTCTGTCAGAATTATCGACTATGAATGCTTTCCTGAACACAATATTTTCGATTTTTTCATGAAATTTCATGAAATTAATCAGCTTACATGCACTGATATATGATTACAAGTGGAATAGTCTTTTTGTGCAGTTCTGGATCATGACCACTGTCTGCCGACAACGGGAGCGTTAACAAGCTCTGCTCGGAGACGTTGAGGATGTAGCGGATGAAGTTGGAGAAAATTGATTGT</canonical_amplicon>
		<polymorphic_amplicon>ACATCGTCAATCCAACTTTCTGTCAGAATTATCGACTATGAATGCTTTCCTGAACACAATATTTTCGATTTTWTCATGAAATTTCATGAAATTAATCAGCTTACATGCACTGATATATGATTACAAGTGGAATAGTCTTTTTGTGCAGTTCTGGATCATGACCACTGTCTGCCGACAACGGGAGCGTTAACAAGCTCTGCTCGGAGACGTTGAGGATGTAGCGGATGAAGTTGGAGAAAATTGATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22593</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>59678</contig_pos>
        <strand></strand>
        <context>TTCTGTCAGA[A/G]RTATCGACTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTCAGGTGTCACCAAATCGCACATCGTCAATCCAACTTTCTGTCAGA</left_flank>
        <right_flank>TTATCGACTATGAATGCTTTCCTGAACACAATATTTTCGATTTTTTCATG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGATTTGCTTCTTTCTATTTGCCATTTCTTGTTTCAACTCTTCTGGTGATGCCAACACTTCTTCTGTCAGATGTTCGACTGTTTTCTTCGCTGTCATTATTTCTCTTTCTATCTCTTCTATTTGCTGAATCAATTCTGTTTTCTGCTTCTCAATATCTTCTGTTCTCTCCACAACATCTGTGTACTGATTGACAACGCCAGCCAATTCACTTTTACATTTACTATGCTCGTTCATCAGCTCGTTCTCTCGACGCTTCCGCAAACTTTGTTTCGAAATCAAGTCATTTTTGCGTTTCTCCGCCTGAATGATCTCATCCTGCATGCGCTCCATCTCTTGCTTCTGCTCGCTGAATTCGTCACTGATTTCGTTGAACATTGGAGCAGACATCTCGTGAAGTTTGATGAAATCGACTAGGAAACTCGTGAGTCTTCTGAATCGATTCGGTTGTTTTTCAGGTGTCACCAAATCGCACATCGTCAATCCAACTTTCTGTCAGAATTATCGACTATGAATGCTTTCCTGAACACAATATTTTCGATTTTTTCATGAAATTTCATGAAATTAATCAGCTTACATGCACTGATATATGATTACAAGTGGAATAGTCTTTTTGTGCAGTTCTGGATCATGACCACTGTCTGCCGACAACGGGAGCGTTAACAAGCTCTGCTCGGAGACGTTGAGGATGTAGCGGATGAAGTTGGAGAAAATTGATTGTGCGACTTCAGCCTGAAAATTAAGAATCTTAAAATGAAATGGAAGGAAGAACTTACATCTGGATTTAAAATGCTGTCAGCTGTTAGTCCGAGTCCCAGCTTTTGTTGCAGAACTTTGGCGATCAACCGAGTGTCATACTGGATTAGTATGACGGATTTAGCGTTCGACATATTTATTAAAGTGTTAAACACTCATAAAAGAGCGAATTCGGTGATAAAACGTGGGGAAAGGCTCCGAAAATGATGGCTGACTCGAACGAGTTACTTGGCCTGTTTTGAATT</canonical>
            <polymorphic>TCGATTTGCTTCTTTCTATTTGCCATTTCTTGTTTCAACTCTTCTGGTGATGCCAACACTTCTTCTGTCAGATGTTCGACTGTTTTCTTCGCTGTCATTATTTCTCTTTCTATCTCTTCTATTTGCTGAATCAATTCTGTTTTCTGCTTCTCAATATCTTCTGTTCTCTCCACAACATCTGTGTACTGATTGACAACGCCAGCCAATTCACTTTTACATTTACTATGCTCGTTCATCAGCTCGTTCTCTCGACGCTTCCGCAAACTTTGTTTCGAAATCAAGTCATTTTTGCGTTTCTCCGCCTGAATGATCTCATCCTGCATGCGCTCCATCTCTTGCTTCTGCTCGCTGAATTCGTCACTGATTTCGTTGAACATTGGAGCAGACATCTCGTGAAGTTTGATGAAATCGACTAGGAAACTCGTGAGTCTTCTGAATCGATTCGGTTGTTTTTCAGGTGTCACCAAATCGCACATCGTCAATCCAACTTTCTGTCAGARTTATCGACTATGAATGCTTTCCTGAACACAATATTTTCGATTTTTTCATGAAATTTCATGAAATTAATCAGCTTACATGCACTGATATATGATTACAAGTGGAATAGTCTTTTTGTGCAGTTCTGGATCATGACCACTGTCTGCCGACAACGGGAGCGTTAACAAGCTCTGCTCGGAGACGTTGAGGATGTAGCGGATGAAGTTGGAGAAAATTGATTGTGCGACTTCAGCCTGAAAATTAAGAATCTTAAAATGAAATGGAAGGAAGAACTTACATCTGGATTTAAAATGCTGTCAGCTGTTAGTCCGAGTCCCAGCTTTTGTTGCAGAACTTTGGCGATCAACCGAGTGTCATACTGGATTAGTATGACGGATTTAGCGTTCGACATATTTATTAAAGTGTTAAACACTCATAAAAGAGCGAATTCGGTGATAAAACGTGGGGAAAGGCTCCGAAAATGATGGCTGACTCGAACGAGTTACTTGGCCTGTTTTGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>187 149 147 147 132 73 72 53 26 10 4</canonical_bands>
                <polymorphic_bands>200 187 149 147 132 73 72 26 10 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGAAGTTTGATGAAATCGACTA</pcr_primer_p1>
		<pcr_primer_p2>ACAGTGGTCATGATCCAGAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTGAAGTTTGATGAAATCGACTAGGAAACTCGTGAGTCTTCTGAATCGATTCGGTTGTTTTTCAGGTGTCACCAAATCGCACATCGTCAATCCAACTTTCTGTCAGAATTATCGACTATGAATGCTTTCCTGAACACAATATTTTCGATTTTTTCATGAAATTTCATGAAATTAATCAGCTTACATGCACTGATATATGATTACAAGTGGAATAGTCTTTTTGTGCAGTTCTGGATCATGACCACTGT</canonical_amplicon>
		<polymorphic_amplicon>GTGAAGTTTGATGAAATCGACTAGGAAACTCGTGAGTCTTCTGAATCGATTCGGTTGTTTTTCAGGTGTCACCAAATCGCACATCGTCAATCCAACTTTCTGTCAGARTTATCGACTATGAATGCTTTCCTGAACACAATATTTTCGATTTTTTCATGAAATTTCATGAAATTAATCAGCTTACATGCACTGATATATGATTACAAGTGGAATAGTCTTTTTGTGCAGTTCTGGATCATGACCACTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22594</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>59469</contig_pos>
        <strand>+</strand>
        <context>AGTCATTTTT[A/G]CGTTTCTCCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGTTCTCTCGACGCTTCCGCAAACTTTGTTTCGAAATCAAGTCATTTTT</left_flank>
        <right_flank>CGTTTCTCCGCCTGAATGATCTCATCCTGCATGCGCTCCATCTCTTGCTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGCCAACTGCTCTTGTATCTCGTTCAATTTTCGGAGCTTCTCCTCAACTTCGTCCATCATATCGAGAATGTCCTCACGGACTTCTGACCATGCCTGAATCCTCTGATTTATCAACGGAACATTCTTCTCGGCATTCGCACAGATGTTGCGAGCTTCGAGTTTTGATTTGAGAGTCTGCCTGGAAACAACCAACGACTCCTTTAGTTCTTCGATTTGCTTCTTTCTATTTGCCATTTCTTGTTTCAACTCTTCTGGTGATGCCAACACTTCTTCTGTCAGATGTTCGACTGTTTTCTTCGCTGTCATTATTTCTCTTTCTATCTCTTCTATTTGCTGAATCAATTCTGTTTTCTGCTTCTCAATATCTTCTGTTCTCTCCACAACATCTGTGTACTGATTGACAACGCCAGCCAATTCACTTTTACATTTACTATGCTCGTTCATCAGCTCGTTCTCTCGACGCTTCCGCAAACTTTGTTTCGAAATCAAGTCATTTTTGCGTTTCTCCGCCTGAATGATCTCATCCTGCATGCGCTCCATCTCTTGCTTCTGCTCGCTGAATTCGTCACTGATTTCGTTGAACATTGGAGCAGACATCTCGTGAAGTTTGATGAAATCGACTAGGAAACTCGTGAGTCTTCTGAATCGATTCGGTTGTTTTTCAGGTGTCACCAAATCGCACATCGTCAATCCAACTTTCTGTCAGAATTATCGACTATGAATGCTTTCCTGAACACAATATTTTCGATTTTTTCATGAAATTTCATGAAATTAATCAGCTTACATGCACTGATATATGATTACAAGTGGAATAGTCTTTTTGTGCAGTTCTGGATCATGACCACTGTCTGCCGACAACGGGAGCGTTAACAAGCTCTGCTCGGAGACGTTGAGGATGTAGCGGATGAAGTTGGAGAAAATTGATTGTGCGACTTCAGCCTGAAAATTAAGAATCTTAAAATGAAATGGAAGGAAGAACTTACATCTGGATTTAAAATG</canonical>
            <polymorphic>ACGCCAACTGCTCTTGTATCTCGTTCAATTTTCGGAGCTTCTCCTCAACTTCGTCCATCATATCGAGAATGTCCTCACGGACTTCTGACCATGCCTGAATCCTCTGATTTATCAACGGAACATTCTTCTCGGCATTCGCACAGATGTTGCGAGCTTCGAGTTTTGATTTGAGAGTCTGCCTGGAAACAACCAACGACTCCTTTAGTTCTTCGATTTGCTTCTTTCTATTTGCCATTTCTTGTTTCAACTCTTCTGGTGATGCCAACACTTCTTCTGTCAGATGTTCGACTGTTTTCTTCGCTGTCATTATTTCTCTTTCTATCTCTTCTATTTGCTGAATCAATTCTGTTTTCTGCTTCTCAATATCTTCTGTTCTCTCCACAACATCTGTGTACTGATTGACAACGCCAGCCAATTCACTTTTACATTTACTATGCTCGTTCATCAGCTCGTTCTCTCGACGCTTCCGCAAACTTTGTTTCGAAATCAAGTCATTTTTRCGTTTCTCCGCCTGAATGATCTCATCCTGCATGCGCTCCATCTCTTGCTTCTGCTCGCTGAATTCGTCACTGATTTCGTTGAACATTGGAGCAGACATCTCGTGAAGTTTGATGAAATCGACTAGGAAACTCGTGAGTCTTCTGAATCGATTCGGTTGTTTTTCAGGTGTCACCAAATCGCACATCGTCAATCCAACTTTCTGTCAGAATTATCGACTATGAATGCTTTCCTGAACACAATATTTTCGATTTTTTCATGAAATTTCATGAAATTAATCAGCTTACATGCACTGATATATGATTACAAGTGGAATAGTCTTTTTGTGCAGTTCTGGATCATGACCACTGTCTGCCGACAACGGGAGCGTTAACAAGCTCTGCTCGGAGACGTTGAGGATGTAGCGGATGAAGTTGGAGAAAATTGATTGTGCGACTTCAGCCTGAAAATTAAGAATCTTAAAATGAAATGGAAGGAAGAACTTACATCTGGATTTAAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAACATCTGTGTACTGATTGA</pcr_primer_p1>
		<pcr_primer_p2>CCTAGTCGATTTCATCAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CACAACATCTGTGTACTGATTGACAACGCCAGCCAATTCACTTTTACATTTACTATGCTCGTTCATCAGCTCGTTCTCTCGACGCTTCCGCAAACTTTGTTTCGAAATCAAGTCATTTTTGCGTTTCTCCGCCTGAATGATCTCATCCTGCATGCGCTCCATCTCTTGCTTCTGCTCGCTGAATTCGTCACTGATTTCGTTGAACATTGGAGCAGACATCTCGTGAAGTTTGATGAAATCGACTAGG</canonical_amplicon>
		<polymorphic_amplicon>CACAACATCTGTGTACTGATTGACAACGCCAGCCAATTCACTTTTACATTTACTATGCTCGTTCATCAGCTCGTTCTCTCGACGCTTCCGCAAACTTTGTTTCGAAATCAAGTCATTTTTRCGTTTCTCCGCCTGAATGATCTCATCCTGCATGCGCTCCATCTCTTGCTTCTGCTCGCTGAATTCGTCACTGATTTCGTTGAACATTGGAGCAGACATCTCGTGAAGTTTGATGAAATCGACTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22595</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>63508</contig_pos>
        <strand></strand>
        <context>TTGAAAATCC[A/C]AAAATTTYGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTCGATTTTCATAATATGTTCTATCAGGAAAAGCATATTTGAAAATCC</left_flank>
        <right_flank>AAAATTTCGCCTGCCTTACCTCGGTTTCGAAATGACTGGTTTCGAAGTAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTCGACACTCTCCAAGTGTGCAGCAGCTTCCATGCTCTTTTTGTGCATTCCTGAGAAATAAGGGCAGATGTAAGGGGTGTTGCGTAGGATATTACGGTTTGCACCTATTAGAGGGGGGTGTGGAAGTCATTAATATCTGGGAAGGTGTGTTGTTACTAATTAATAGGGAGTAATATGTTCCGTAGGCAGATTTCTTGATTTTTCAATTAAAGCTTCTACAGTACCCGCCAATAAGATGTATAAATATCTCATTTTCAGTAGACTTTCAGCTGCGCGTCACTTCGAAACCAGTCATTTCGAAACCGTAGTAATACAGGCTGATGGATAAATTTCCGACTGAAAAAACAATTTCTGGGTTTTCAAATATGCTTTTTCTGATAGAACACAATCTGAAAATCGAAAAATTCATCATTTTTTCTTCTTCTGAGAACATCAAATTTTGAATTTTTTCGATTTTCATAATATGTTCTATCAGGAAAAGCATATTTGAAAATCCAAAAATTTCGCCTGCCTTACCTCGGTTTCGAAATGACTGGTTTCGAAGTAACGAGAAGCCTGAAAATTGCCAAGATGGCCGAAAATCAACTGGAAATTACGTTTTTGTATATCTCATTGACCGACACTGTATATCCTTGACCTACCTAACAACCATGGCGCCGCACTCTGCTGTGGATCCGCTGTCTCTGCTGACTTTGTAATCGTTTCTGGAAGCGGAAGCGAGTGTCGAACCATGGCTCCGTACAACCCATACTCGGCCATTATCGTACTCTTTCCCCACGTCTTCTCGGTTTTTCGCCACTTGGCACGTCTGTTTTGGAACCATACCTGAAATGGAATTGTGTTGTGATGAGCCTAACCCAGCCTAATCTGGCCTAGTCTGTATTAGGTTTCCGTGAGAACCCTGTTTAAAGGTTCTTGGATTACACATACACTAGTCAATTGTCAATTGGCCGTGTATGTCTTCTTTAAACGGAAGGAATTCCTAGAAATTCAATTG</canonical>
            <polymorphic>TTTCTCGACACTCTCCAAGTGTGCAGCAGCTTCCATGCTCTTTTTGTGCATTCCTGAGAAATAAGGGCAGATGTAAGGGGTGTTGCGTAGGATATTACGGTTTGCACCTATTAGAGGGGGGTGTGGAAGTCATTAATATCTGGGAAGGTGTGTTGTTACTAATTAATAGGGAGTAATATGTTCCGTAGGCAGATTTCTTGATTTTTCAATTAAAGCTTCTACAGTACCCGCCAATAAGATGTATAAATATCTCATTTTCAGTAGACTTTCAGCTGCGCGTCACTTCGAAACCAGTCATTTCGAAACCGTAGTAATACAGGCTGATGGATAAATTTCCGACTGAAAAAACAATTTCTGGGTTTTCAAATATGCTTTTTCTGATAGAACACAATCTGAAAATCGAAAAATTCATCATTTTTTCTTCTTCTGAGAACATCAAATTTTGAATTTTTTCGATTTTCATAATATGTTCTATCAGGAAAAGCATATTTGAAAATCCMAAAATTTCGCCTGCCTTACCTCGGTTTCGAAATGACTGGTTTCGAAGTAACGAGAAGCCTGAAAATTGCCAAGATGGCCGAAAATCAACTGGAAATTACGTTTTTGTATATCTCATTGACCGACACTGTATATCCTTGACCTACCTAACAACCATGGCGCCGCACTCTGCTGTGGATCCGCTGTCTCTGCTGACTTTGTAATCGTTTCTGGAAGCGGAAGCGAGTGTCGAACCATGGCTCCGTACAACCCATACTCGGCCATTATCGTACTCTTTCCCCACGTCTTCTCGGTTTTTCGCCACTTGGCACGTCTGTTTTGGAACCATACCTGAAATGGAATTGTGTTGTGATGAGCCTAACCCAGCCTAATCTGGCCTAGTCTGTATTAGGTTTCCGTGAGAACCCTGTTTAAAGGTTCTTGGATTACACATACACTAGTCAATTGTCAATTGGCCGTGTATGTCTTCTTTAAACGGAAGGAATTCCTAGAAATTCAATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTCTTCTGAGAACATCAAAT</pcr_primer_p1>
		<pcr_primer_p2>CATGGTTGTTAGGTAGGTCAA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TTCTTCTTCTGAGAACATCAAATTTTGAATTTTTTCGATTTTCATAATATGTTCTATCAGGAAAAGCATATTTGAAAATCCAAAAATTTCGCCTGCCTTACCTCGGTTTCGAAATGACTGGTTTCGAAGTAACGAGAAGCCTGAAAATTGCCAAGATGGCCGAAAATCAACTGGAAATTACGTTTTTGTATATCTCATTGACCGACACTGTATATCCTTGACCTACCTAACAACCATG</canonical_amplicon>
		<polymorphic_amplicon>TTCTTCTTCTGAGAACATCAAATTTTGAATTTTTTCGATTTTCATAATATGTTCTATCAGGAAAAGCATATTTGAAAATCCMAAAATTTCGCCTGCCTTACCTCGGTTTCGAAATGACTGGTTTCGAAGTAACGAGAAGCCTGAAAATTGCCAAGATGGCCGAAAATCAACTGGAAATTACGTTTTTGTATATCTCATTGACCGACACTGTATATCCTTGACCTACCTAACAACCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22596</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>63516</contig_pos>
        <strand></strand>
        <context>CCMAAAATTT[C/T]GCCTGCCTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCATAATATGTTCTATCAGGAAAAGCATATTTGAAAATCCAAAAATTT</left_flank>
        <right_flank>GCCTGCCTTACCTCGGTTTCGAAATGACTGGTTTCGAAGTAACGAGAAGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTCTCCAAGTGTGCAGCAGCTTCCATGCTCTTTTTGTGCATTCCTGAGAAATAAGGGCAGATGTAAGGGGTGTTGCGTAGGATATTACGGTTTGCACCTATTAGAGGGGGGTGTGGAAGTCATTAATATCTGGGAAGGTGTGTTGTTACTAATTAATAGGGAGTAATATGTTCCGTAGGCAGATTTCTTGATTTTTCAATTAAAGCTTCTACAGTACCCGCCAATAAGATGTATAAATATCTCATTTTCAGTAGACTTTCAGCTGCGCGTCACTTCGAAACCAGTCATTTCGAAACCGTAGTAATACAGGCTGATGGATAAATTTCCGACTGAAAAAACAATTTCTGGGTTTTCAAATATGCTTTTTCTGATAGAACACAATCTGAAAATCGAAAAATTCATCATTTTTTCTTCTTCTGAGAACATCAAATTTTGAATTTTTTCGATTTTCATAATATGTTCTATCAGGAAAAGCATATTTGAAAATCCAAAAATTTCGCCTGCCTTACCTCGGTTTCGAAATGACTGGTTTCGAAGTAACGAGAAGCCTGAAAATTGCCAAGATGGCCGAAAATCAACTGGAAATTACGTTTTTGTATATCTCATTGACCGACACTGTATATCCTTGACCTACCTAACAACCATGGCGCCGCACTCTGCTGTGGATCCGCTGTCTCTGCTGACTTTGTAATCGTTTCTGGAAGCGGAAGCGAGTGTCGAACCATGGCTCCGTACAACCCATACTCGGCCATTATCGTACTCTTTCCCCACGTCTTCTCGGTTTTTCGCCACTTGGCACGTCTGTTTTGGAACCATACCTGAAATGGAATTGTGTTGTGATGAGCCTAACCCAGCCTAATCTGGCCTAGTCTGTATTAGGTTTCCGTGAGAACCCTGTTTAAAGGTTCTTGGATTACACATACACTAGTCAATTGTCAATTGGCCGTGTATGTCTTCTTTAAACGGAAGGAATTCCTAGAAATTCAATTGACACTTCG</canonical>
            <polymorphic>CACTCTCCAAGTGTGCAGCAGCTTCCATGCTCTTTTTGTGCATTCCTGAGAAATAAGGGCAGATGTAAGGGGTGTTGCGTAGGATATTACGGTTTGCACCTATTAGAGGGGGGTGTGGAAGTCATTAATATCTGGGAAGGTGTGTTGTTACTAATTAATAGGGAGTAATATGTTCCGTAGGCAGATTTCTTGATTTTTCAATTAAAGCTTCTACAGTACCCGCCAATAAGATGTATAAATATCTCATTTTCAGTAGACTTTCAGCTGCGCGTCACTTCGAAACCAGTCATTTCGAAACCGTAGTAATACAGGCTGATGGATAAATTTCCGACTGAAAAAACAATTTCTGGGTTTTCAAATATGCTTTTTCTGATAGAACACAATCTGAAAATCGAAAAATTCATCATTTTTTCTTCTTCTGAGAACATCAAATTTTGAATTTTTTCGATTTTCATAATATGTTCTATCAGGAAAAGCATATTTGAAAATCCAAAAATTTYGCCTGCCTTACCTCGGTTTCGAAATGACTGGTTTCGAAGTAACGAGAAGCCTGAAAATTGCCAAGATGGCCGAAAATCAACTGGAAATTACGTTTTTGTATATCTCATTGACCGACACTGTATATCCTTGACCTACCTAACAACCATGGCGCCGCACTCTGCTGTGGATCCGCTGTCTCTGCTGACTTTGTAATCGTTTCTGGAAGCGGAAGCGAGTGTCGAACCATGGCTCCGTACAACCCATACTCGGCCATTATCGTACTCTTTCCCCACGTCTTCTCGGTTTTTCGCCACTTGGCACGTCTGTTTTGGAACCATACCTGAAATGGAATTGTGTTGTGATGAGCCTAACCCAGCCTAATCTGGCCTAGTCTGTATTAGGTTTCCGTGAGAACCCTGTTTAAAGGTTCTTGGATTACACATACACTAGTCAATTGTCAATTGGCCGTGTATGTCTTCTTTAAACGGAAGGAATTCCTAGAAATTCAATTGACACTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGATTTTCATAATATGTTCTATCA</pcr_primer_p1>
		<pcr_primer_p2>GATTACAAAGTCAGCAGAGACAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCGATTTTCATAATATGTTCTATCAGGAAAAGCATATTTGAAAATCCAAAAATTTCGCCTGCCTTACCTCGGTTTCGAAATGACTGGTTTCGAAGTAACGAGAAGCCTGAAAATTGCCAAGATGGCCGAAAATCAACTGGAAATTACGTTTTTGTATATCTCATTGACCGACACTGTATATCCTTGACCTACCTAACAACCATGGCGCCGCACTCTGCTGTGGATCCGCTGTCTCTGCTGACTTTGTAATC</canonical_amplicon>
		<polymorphic_amplicon>TCGATTTTCATAATATGTTCTATCAGGAAAAGCATATTTGAAAATCCAAAAATTTYGCCTGCCTTACCTCGGTTTCGAAATGACTGGTTTCGAAGTAACGAGAAGCCTGAAAATTGCCAAGATGGCCGAAAATCAACTGGAAATTACGTTTTTGTATATCTCATTGACCGACACTGTATATCCTTGACCTACCTAACAACCATGGCGCCGCACTCTGCTGTGGATCCGCTGTCTCTGCTGACTTTGTAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22597</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>63846</contig_pos>
        <strand></strand>
        <context>CCTGAAATGG[A/G]ATTGTGTTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGGTTTTTCGCCACTTGGCACGTCTGTTTTGGAACCATACCTGAAATGG</left_flank>
        <right_flank>ATTGTGTTGTGATGAGCCTAACCCAGCCTAATCTGGCCTAGTCTGTATTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTGAAAAAACAATTTCTGGGTTTTCAAATATGCTTTTTCTGATAGAACACAATCTGAAAATCGAAAAATTCATCATTTTTTCTTCTTCTGAGAACATCAAATTTTGAATTTTTTCGATTTTCATAATATGTTCTATCAGGAAAAGCATATTTGAAAATCCAAAAATTTCGCCTGCCTTACCTCGGTTTCGAAATGACTGGTTTCGAAGTAACGAGAAGCCTGAAAATTGCCAAGATGGCCGAAAATCAACTGGAAATTACGTTTTTGTATATCTCATTGACCGACACTGTATATCCTTGACCTACCTAACAACCATGGCGCCGCACTCTGCTGTGGATCCGCTGTCTCTGCTGACTTTGTAATCGTTTCTGGAAGCGGAAGCGAGTGTCGAACCATGGCTCCGTACAACCCATACTCGGCCATTATCGTACTCTTTCCCCACGTCTTCTCGGTTTTTCGCCACTTGGCACGTCTGTTTTGGAACCATACCTGAAATGGAATTGTGTTGTGATGAGCCTAACCCAGCCTAATCTGGCCTAGTCTGTATTAGGTTTCCGTGAGAACCCTGTTTAAAGGTTCTTGGATTACACATACACTAGTCAATTGTCAATTGGCCGTGTATGTCTTCTTTAAACGGAAGGAATTCCTAGAAATTCAATTGACACTTCGATGTCCTTCCTTAAAAAGGGGCCCTTTTGAGAAAGGAATTTTGCCCTCTAACTTTTCAAAGAAGAAGAGCAAAATGCGAAATTAGCACCAATAAAAGGGGGACTCCGAAACAAATAAAAAGAAGAAGGCAACAATTCGCTAATTGGTATCCCCAAATGAAGACATTAAAAAAAACTAACCTGAATCCGATCCTCTTGAAGTTCAGTCTTCCCAGCAAGCACTTCACGAGCATAGACATCCGGATAGTGAGCCTCTTGGAACGCCTTCTCGAGTTCATCAATTTGATATTGGGAGAAGATTGTGCGATGTCTTCGCTTCTTCCGTTTGCTA</canonical>
            <polymorphic>ACTGAAAAAACAATTTCTGGGTTTTCAAATATGCTTTTTCTGATAGAACACAATCTGAAAATCGAAAAATTCATCATTTTTTCTTCTTCTGAGAACATCAAATTTTGAATTTTTTCGATTTTCATAATATGTTCTATCAGGAAAAGCATATTTGAAAATCCAAAAATTTCGCCTGCCTTACCTCGGTTTCGAAATGACTGGTTTCGAAGTAACGAGAAGCCTGAAAATTGCCAAGATGGCCGAAAATCAACTGGAAATTACGTTTTTGTATATCTCATTGACCGACACTGTATATCCTTGACCTACCTAACAACCATGGCGCCGCACTCTGCTGTGGATCCGCTGTCTCTGCTGACTTTGTAATCGTTTCTGGAAGCGGAAGCGAGTGTCGAACCATGGCTCCGTACAACCCATACTCGGCCATTATCGTACTCTTTCCCCACGTCTTCTCGGTTTTTCGCCACTTGGCACGTCTGTTTTGGAACCATACCTGAAATGGRATTGTGTTGTGATGAGCCTAACCCAGCCTAATCTGGCCTAGTCTGTATTAGGTTTCCGTGAGAACCCTGTTTAAAGGTTCTTGGATTACACATACACTAGTCAATTGTCAATTGGCCGTGTATGTCTTCTTTAAACGGAAGGAATTCCTAGAAATTCAATTGACACTTCGATGTCCTTCCTTAAAAAGGGGCCCTTTTGAGAAAGGAATTTTGCCCTCTAACTTTTCAAAGAAGAAGAGCAAAATGCGAAATTAGCACCAATAAAAGGGGGACTCCGAAACAAATAAAAAGAAGAAGGCAACAATTCGCTAATTGGTATCCCCAAATGAAGACATTAAAAAAAACTAACCTGAATCCGATCCTCTTGAAGTTCAGTCTTCCCAGCAAGCACTTCACGAGCATAGACATCCGGATAGTGAGCCTCTTGGAACGCCTTCTCGAGTTCATCAATTTGATATTGGGAGAAGATTGTGCGATGTCTTCGCTTCTTCCGTTTGCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>244 138 103 61 57 56 53 52 49 43 33 33 30 11 10 8 7 7 5</canonical_bands>
                <polymorphic_bands>347 138 61 57 56 53 52 49 43 33 33 30 11 10 8 7 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTCTCTGCTGACTTTGTAATC</pcr_primer_p1>
		<pcr_primer_p2>TGTAATCCAAGAACCTTTAAACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTGTCTCTGCTGACTTTGTAATCGTTTCTGGAAGCGGAAGCGAGTGTCGAACCATGGCTCCGTACAACCCATACTCGGCCATTATCGTACTCTTTCCCCACGTCTTCTCGGTTTTTCGCCACTTGGCACGTCTGTTTTGGAACCATACCTGAAATGGAATTGTGTTGTGATGAGCCTAACCCAGCCTAATCTGGCCTAGTCTGTATTAGGTTTCCGTGAGAACCCTGTTTAAAGGTTCTTGGATTACA</canonical_amplicon>
		<polymorphic_amplicon>CTGTCTCTGCTGACTTTGTAATCGTTTCTGGAAGCGGAAGCGAGTGTCGAACCATGGCTCCGTACAACCCATACTCGGCCATTATCGTACTCTTTCCCCACGTCTTCTCGGTTTTTCGCCACTTGGCACGTCTGTTTTGGAACCATACCTGAAATGGRATTGTGTTGTGATGAGCCTAACCCAGCCTAATCTGGCCTAGTCTGTATTAGGTTTCCGTGAGAACCCTGTTTAAAGGTTCTTGGATTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22600</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>71346</contig_pos>
        <strand>+</strand>
        <context>ATAATGCAAA[A/T]CCTTTCTTWT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGTCGCCGTGGACCTTCGATCATGGTCACTTTTATCAGAATAATGCAAA</left_flank>
        <right_flank>CCTTTCTTATTTCAGAATGTCCCTAAGAAAGTGTCTTCCGATGGTCTATC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGCCCTAATCTACAGGTGTTTTTTGGAAACTGTAGTTATTAGGTCCCACAACGACAATTACAGTAACCTAAAATGTTTTCATTATCCGGATTTATTTTCGTCGATTTTTCTGTAATTTTTGGCTGTCTAGCTATTTTCAAAGACTCTTTTTCGATTTTTCGGGTTTTTTCGTCTGAAATTTGATGGAACGGTATTCGAGAAGATTACTGTAGCTTACTGTAGAATTTGTCTGCATTCTGACGTGAATGTATTTGCAAAATGAACTACAAACTATAAGCTACAGTAACCTACAGTAATCTTTGCGAACACCATCCCGTGAAATTTCAGACGAAAAATTCGAAAAAATCAAAAAAGAATTATCAAAAATAGATGAAAAAAACTGAAAAATCTGAAAATTTTGCAAAAATGGGTGGAAAAAAAATCAATTACATATTTTAGGTTACTGTAGTTGTCGCCGTGGACCTTCGATCATGGTCACTTTTATCAGAATAATGCAAAACCTTTCTTATTTCAGAATGTCCCTAAGAAAGTGTCTTCCGATGGTCTATCGGCTCGTCAACTATTCAAAGCATCGCCTGGAAATATTCTAATCGGAGCAGACTACAAACAACTCGAGTTACGAGTTCTCGCTCATCTATGTAACGATTCGAAGCTAGTGAAAATCATATCAGAAGATCAAGATCTATTCGGACAATTGTCTTCAGAATGGGGATTTTCTCGCGACGTCGTCAAGCAGTTGTCCTACGGTCTTATCTATGGAATGGGTGCGAAGACGTTGGCGGAGTTGACACGTATCAAATTGGAGGAGGCCGAGAAAATGCTTGTTTCGTTTTTCGCCATGTTTCCAGGTTAGATTTTTTATACATCATGATAGAATCTGGATCCTTAAATTGCAGGAGTACGATCCTATATAAACGCAGTCAAGGTTAAAATAACCAAGGAAGAGCCAATAGAGACTATAATGGGACGGAAGAAGTTTATCAAGCTGGGACTTACTGG</canonical>
            <polymorphic>TAGCCCTAATCTACAGGTGTTTTTTGGAAACTGTAGTTATTAGGTCCCACAACGACAATTACAGTAACCTAAAATGTTTTCATTATCCGGATTTATTTTCGTCGATTTTTCTGTAATTTTTGGCTGTCTAGCTATTTTCAAAGACTCTTTTTCGATTTTTCGGGTTTTTTCGTCTGAAATTTGATGGAACGGTATTCGAGAAGATTACTGTAGCTTACTGTAGAATTTGTCTGCATTCTGACGTGAATGTATTTGCAAAATGAACTACAAACTATAAGCTACAGTAACCTACAGTAATCTTTGCGAACACCATCCCGTGAAATTTCAGACGAAAAATTCGAAAAAATCAAAAAAGAATTATCAAAAATAGATGAAAAAAACTGAAAAATCTGAAAATTTTGCAAAAATGGGTGGAAAAAAAATCAATTACATATTTTAGGTTACTGTAGTTGTCGCCGTGGACCTTCGATCATGGTCACTTTTATCAGAATAATGCAAAWCCTTTCTTATTTCAGAATGTCCCTAAGAAAGTGTCTTCCGATGGTCTATCGGCTCGTCAACTATTCAAAGCATCGCCTGGAAATATTCTAATCGGAGCAGACTACAAACAACTCGAGTTACGAGTTCTCGCTCATCTATGTAACGATTCGAAGCTAGTGAAAATCATATCAGAAGATCAAGATCTATTCGGACAATTGTCTTCAGAATGGGGATTTTCTCGCGACGTCGTCAAGCAGTTGTCCTACGGTCTTATCTATGGAATGGGTGCGAAGACGTTGGCGGAGTTGACACGTATCAAATTGGAGGAGGCCGAGAAAATGCTTGTTTCGTTTTTCGCCATGTTTCCAGGTTAGATTTTTTATACATCATGATAGAATCTGGATCCTTAAATTGCAGGAGTACGATCCTATATAAACGCAGTCAAGGTTAAAATAACCAAGGAAGAGCCAATAGAGACTATAATGGGACGGAAGAAGTTTATCAAGCTGGGACTTACTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGCCCTAATCTACAGGTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TAGTTGACGAGCCGATAGAC</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>AACCTTTCTTATTTCAGAATGTCCCTAAGAAAGTGTCTTCCGATGGTCTATCGGCTCGTCAACTA</canonical_amplicon>
		<polymorphic_amplicon>AWCCTTTCTTATTTCAGAATGTCCCTAAGAAAGTGTCTTCCGATGGTCTATCGGCTCGTCAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22601</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>71355</contig_pos>
        <strand>+</strand>
        <context>AWCCTTTCTT[A/T]TTTCAGAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGGACCTTCGATCATGGTCACTTTTATCAGAATAATGCAAAACCTTTCTT</left_flank>
        <right_flank>TTTCAGAATGTCCCTAAGAAAGTGTCTTCCGATGGTCTATCGGCTCGTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTACAGGTGTTTTTTGGAAACTGTAGTTATTAGGTCCCACAACGACAATTACAGTAACCTAAAATGTTTTCATTATCCGGATTTATTTTCGTCGATTTTTCTGTAATTTTTGGCTGTCTAGCTATTTTCAAAGACTCTTTTTCGATTTTTCGGGTTTTTTCGTCTGAAATTTGATGGAACGGTATTCGAGAAGATTACTGTAGCTTACTGTAGAATTTGTCTGCATTCTGACGTGAATGTATTTGCAAAATGAACTACAAACTATAAGCTACAGTAACCTACAGTAATCTTTGCGAACACCATCCCGTGAAATTTCAGACGAAAAATTCGAAAAAATCAAAAAAGAATTATCAAAAATAGATGAAAAAAACTGAAAAATCTGAAAATTTTGCAAAAATGGGTGGAAAAAAAATCAATTACATATTTTAGGTTACTGTAGTTGTCGCCGTGGACCTTCGATCATGGTCACTTTTATCAGAATAATGCAAAACCTTTCTTATTTCAGAATGTCCCTAAGAAAGTGTCTTCCGATGGTCTATCGGCTCGTCAACTATTCAAAGCATCGCCTGGAAATATTCTAATCGGAGCAGACTACAAACAACTCGAGTTACGAGTTCTCGCTCATCTATGTAACGATTCGAAGCTAGTGAAAATCATATCAGAAGATCAAGATCTATTCGGACAATTGTCTTCAGAATGGGGATTTTCTCGCGACGTCGTCAAGCAGTTGTCCTACGGTCTTATCTATGGAATGGGTGCGAAGACGTTGGCGGAGTTGACACGTATCAAATTGGAGGAGGCCGAGAAAATGCTTGTTTCGTTTTTCGCCATGTTTCCAGGTTAGATTTTTTATACATCATGATAGAATCTGGATCCTTAAATTGCAGGAGTACGATCCTATATAAACGCAGTCAAGGTTAAAATAACCAAGGAAGAGCCAATAGAGACTATAATGGGACGGAAGAAGTTTATCAAGCTGGGACTTACTGGAGAAGAAAA</canonical>
            <polymorphic>TCTACAGGTGTTTTTTGGAAACTGTAGTTATTAGGTCCCACAACGACAATTACAGTAACCTAAAATGTTTTCATTATCCGGATTTATTTTCGTCGATTTTTCTGTAATTTTTGGCTGTCTAGCTATTTTCAAAGACTCTTTTTCGATTTTTCGGGTTTTTTCGTCTGAAATTTGATGGAACGGTATTCGAGAAGATTACTGTAGCTTACTGTAGAATTTGTCTGCATTCTGACGTGAATGTATTTGCAAAATGAACTACAAACTATAAGCTACAGTAACCTACAGTAATCTTTGCGAACACCATCCCGTGAAATTTCAGACGAAAAATTCGAAAAAATCAAAAAAGAATTATCAAAAATAGATGAAAAAAACTGAAAAATCTGAAAATTTTGCAAAAATGGGTGGAAAAAAAATCAATTACATATTTTAGGTTACTGTAGTTGTCGCCGTGGACCTTCGATCATGGTCACTTTTATCAGAATAATGCAAAACCTTTCTTWTTTCAGAATGTCCCTAAGAAAGTGTCTTCCGATGGTCTATCGGCTCGTCAACTATTCAAAGCATCGCCTGGAAATATTCTAATCGGAGCAGACTACAAACAACTCGAGTTACGAGTTCTCGCTCATCTATGTAACGATTCGAAGCTAGTGAAAATCATATCAGAAGATCAAGATCTATTCGGACAATTGTCTTCAGAATGGGGATTTTCTCGCGACGTCGTCAAGCAGTTGTCCTACGGTCTTATCTATGGAATGGGTGCGAAGACGTTGGCGGAGTTGACACGTATCAAATTGGAGGAGGCCGAGAAAATGCTTGTTTCGTTTTTCGCCATGTTTCCAGGTTAGATTTTTTATACATCATGATAGAATCTGGATCCTTAAATTGCAGGAGTACGATCCTATATAAACGCAGTCAAGGTTAAAATAACCAAGGAAGAGCCAATAGAGACTATAATGGGACGGAAGAAGTTTATCAAGCTGGGACTTACTGGAGAAGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGCCCTAATCTACAGGTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TAGTTGACGAGCCGATAGAC</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>TATTTCAGAATGTCCCTAAGAAAGTGTCTTCCGATGGTCTATCGGCTCGTCAACTA</canonical_amplicon>
		<polymorphic_amplicon>TWTTTCAGAATGTCCCTAAGAAAGTGTCTTCCGATGGTCTATCGGCTCGTCAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22602</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>71442</contig_pos>
        <strand>+</strand>
        <context>TTCTAATCGG[A/T]GCAGACTACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTATCGGCTCGTCAACTATTCAAAGCATCGCCTGGAAATATTCTAATCGG</left_flank>
        <right_flank>GCAGACTACAAACAACTCGAGTTACGAGTTCTCGCTCATCTATGTAACGA</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGTCGATTTTTCTGTAATTTTTGGCTGTCTAGCTATTTTCAAAGACTCTTTTTCGATTTTTCGGGTTTTTTCGTCTGAAATTTGATGGAACGGTATTCGAGAAGATTACTGTAGCTTACTGTAGAATTTGTCTGCATTCTGACGTGAATGTATTTGCAAAATGAACTACAAACTATAAGCTACAGTAACCTACAGTAATCTTTGCGAACACCATCCCGTGAAATTTCAGACGAAAAATTCGAAAAAATCAAAAAAGAATTATCAAAAATAGATGAAAAAAACTGAAAAATCTGAAAATTTTGCAAAAATGGGTGGAAAAAAAATCAATTACATATTTTAGGTTACTGTAGTTGTCGCCGTGGACCTTCGATCATGGTCACTTTTATCAGAATAATGCAAAACCTTTCTTATTTCAGAATGTCCCTAAGAAAGTGTCTTCCGATGGTCTATCGGCTCGTCAACTATTCAAAGCATCGCCTGGAAATATTCTAATCGGAGCAGACTACAAACAACTCGAGTTACGAGTTCTCGCTCATCTATGTAACGATTCGAAGCTAGTGAAAATCATATCAGAAGATCAAGATCTATTCGGACAATTGTCTTCAGAATGGGGATTTTCTCGCGACGTCGTCAAGCAGTTGTCCTACGGTCTTATCTATGGAATGGGTGCGAAGACGTTGGCGGAGTTGACACGTATCAAATTGGAGGAGGCCGAGAAAATGCTTGTTTCGTTTTTCGCCATGTTTCCAGGTTAGATTTTTTATACATCATGATAGAATCTGGATCCTTAAATTGCAGGAGTACGATCCTATATAAACGCAGTCAAGGTTAAAATAACCAAGGAAGAGCCAATAGAGACTATAATGGGACGGAAGAAGTTTATCAAGCTGGGACTTACTGGAGAAGAAAAAGCGAGAATGGAGAGAGTGGCTGTGAATTATACGGTTCAGGGAAGTGCCAGTGAGATATTCAAAACGGCGATGGTGGAGATTCAGGA</canonical>
            <polymorphic>TTTCGTCGATTTTTCTGTAATTTTTGGCTGTCTAGCTATTTTCAAAGACTCTTTTTCGATTTTTCGGGTTTTTTCGTCTGAAATTTGATGGAACGGTATTCGAGAAGATTACTGTAGCTTACTGTAGAATTTGTCTGCATTCTGACGTGAATGTATTTGCAAAATGAACTACAAACTATAAGCTACAGTAACCTACAGTAATCTTTGCGAACACCATCCCGTGAAATTTCAGACGAAAAATTCGAAAAAATCAAAAAAGAATTATCAAAAATAGATGAAAAAAACTGAAAAATCTGAAAATTTTGCAAAAATGGGTGGAAAAAAAATCAATTACATATTTTAGGTTACTGTAGTTGTCGCCGTGGACCTTCGATCATGGTCACTTTTATCAGAATAATGCAAAACCTTTCTTATTTCAGAATGTCCCTAAGAAAGTGTCTTCCGATGGTCTATCGGCTCGTCAACTATTCAAAGCATCGCCTGGAAATATTCTAATCGGWGCAGACTACAAACAACTCGAGTTACGAGTTCTCGCTCATCTATGTAACGATTCGAAGCTAGTGAAAATCATATCAGAAGATCAAGATCTATTCGGACAATTGTCTTCAGAATGGGGATTTTCTCGCGACGTCGTCAAGCAGTTGTCCTACGGTCTTATCTATGGAATGGGTGCGAAGACGTTGGCGGAGTTGACACGTATCAAATTGGAGGAGGCCGAGAAAATGCTTGTTTCGTTTTTCGCCATGTTTCCAGGTTAGATTTTTTATACATCATGATAGAATCTGGATCCTTAAATTGCAGGAGTACGATCCTATATAAACGCAGTCAAGGTTAAAATAACCAAGGAAGAGCCAATAGAGACTATAATGGGACGGAAGAAGTTTATCAAGCTGGGACTTACTGGAGAAGAAAAAGCGAGAATGGAGAGAGTGGCTGTGAATTATACGGTTCAGGGAAGTGCCAGTGAGATATTCAAAACGGCGATGGTGGAGATTCAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>392 96 88 79 77 64 64 55 27 25 19 14</canonical_bands>
                <polymorphic_bands>392 132 96 88 79 64 64 27 25 19 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAATGTCCCTAAGAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TAGATAAGACCGTAGGACAACTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAATGTCCCTAAGAAAGTGTCTTCCGATGGTCTATCGGCTCGTCAACTATTCAAAGCATCGCCTGGAAATATTCTAATCGGAGCAGACTACAAACAACTCGAGTTACGAGTTCTCGCTCATCTATGTAACGATTCGAAGCTAGTGAAAATCATATCAGAAGATCAAGATCTATTCGGACAATTGTCTTCAGAATGGGGATTTTCTCGCGACGTCGTCAAGCAGTTGTCCTACGGTCTTATCTA</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAATGTCCCTAAGAAAGTGTCTTCCGATGGTCTATCGGCTCGTCAACTATTCAAAGCATCGCCTGGAAATATTCTAATCGGWGCAGACTACAAACAACTCGAGTTACGAGTTCTCGCTCATCTATGTAACGATTCGAAGCTAGTGAAAATCATATCAGAAGATCAAGATCTATTCGGACAATTGTCTTCAGAATGGGGATTTTCTCGCGACGTCGTCAAGCAGTTGTCCTACGGTCTTATCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22603</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>175421</contig_pos>
        <strand>+</strand>
        <context>GAATAGGACC[A/G]CAAAATTATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATGAGTTGATCACCTGAACAAAAGGATATTTATTGTTAGAATAGGACC</left_flank>
        <right_flank>CAAAATTATACCTTTCGGAGCTCGTCTTTTGAACGGTTTCTCGTTTCTGC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACGAAACCAATAACAGATATTAGGGTGAAGAGATCAGATAGAGAGTTATTGAGGTTTGGATGCCATCTCAGCGTCACGCATCGCACTGAAATCAGTGGAACCGGTGGCGCCGCCTTGATAGTTTTGTGGTTCGAACGTTTGATTCGAGTCACTGTCGAAATTGTCGCCAGTGGAGAAGTTGGAGTCTTCGTTGATATCGAAGTTAACTACTGGACGGGTGACACTCGTGGAGTCTTGCGAGTTCTCAGCTGATGGAATCTGATTGCTCTCCTCGTCAACTTCTTTGATTTGAGCCTTTGGTGGAGCCATGATATTTTGAGCGCTCACTGAAATAGGATACTTTGAAAATCGATAAATCGTCCAGGTTGTTACCTGGAACCCATTTGTAAATTCGAATATTGGTGTCTTTGATGAGAACGAGTTTCTTCTCCCACCTGCGGACTTTTTCCAATGAGTTGATCACCTGAACAAAAGGATATTTATTGTTAGAATAGGACCACAAAATTATACCTTTCGGAGCTCGTCTTTTGAACGGTTTCTCGTTTCTGCGCGATGGGATCGATTTGCCGAGTACATATGTAAAATATGAAATTAAGAAAACACAAAAAAAAACTCAAAAAGCAACTAATCGGAGAGCACTGAAAGAAAAAAAAGCGAGAACTTTGTTCAAAATTTGTTTAGGGGGAGCAAACTCTTCCGTCTCTCACTCTCTAATGCGTGACGATGGAGCGCATTTGCATTTCCGTGTCATTTCAATTTTATTCTGCGATTCGATTTTGTTTCGCAACAAATAACCTAGTTTTTGCTAAATTTATCATATTTTGCGCATATAAATATACTGTTGAATGCTTACACTCATTTTTCGTTATATTCTTAATTGAAATTTCTCTTTCAGTTCGCTTCAAAACCTTGTGAAATGTCGACAATCGGAAAAGAGGATATTTACGAGTCTGACGGAGCTGCCAACCCAGTTCAGAATCCTCAACCGGAGAATGATAC</canonical>
            <polymorphic>CACGAAACCAATAACAGATATTAGGGTGAAGAGATCAGATAGAGAGTTATTGAGGTTTGGATGCCATCTCAGCGTCACGCATCGCACTGAAATCAGTGGAACCGGTGGCGCCGCCTTGATAGTTTTGTGGTTCGAACGTTTGATTCGAGTCACTGTCGAAATTGTCGCCAGTGGAGAAGTTGGAGTCTTCGTTGATATCGAAGTTAACTACTGGACGGGTGACACTCGTGGAGTCTTGCGAGTTCTCAGCTGATGGAATCTGATTGCTCTCCTCGTCAACTTCTTTGATTTGAGCCTTTGGTGGAGCCATGATATTTTGAGCGCTCACTGAAATAGGATACTTTGAAAATCGATAAATCGTCCAGGTTGTTACCTGGAACCCATTTGTAAATTCGAATATTGGTGTCTTTGATGAGAACGAGTTTCTTCTCCCACCTGCGGACTTTTTCCAATGAGTTGATCACCTGAACAAAAGGATATTTATTGTTAGAATAGGACCRCAAAATTATACCTTTCGGAGCTCGTCTTTTGAACGGTTTCTCGTTTCTGCGCGATGGGATCGATTTGCCGAGTACATATGTAAAATATGAAATTAAGAAAACACAAAAAAAAACTCAAAAAGCAACTAATCGGAGAGCACTGAAAGAAAAAAAAGCGAGAACTTTGTTCAAAATTTGTTTAGGGGGAGCAAACTCTTCCGTCTCTCACTCTCTAATGCGTGACGATGGAGCGCATTTGCATTTCCGTGTCATTTCAATTTTATTCTGCGATTCGATTTTGTTTCGCAACAAATAACCTAGTTTTTGCTAAATTTATCATATTTTGCGCATATAAATATACTGTTGAATGCTTACACTCATTTTTCGTTATATTCTTAATTGAAATTTCTCTTTCAGTTCGCTTCAAAACCTTGTGAAATGTCGACAATCGGAAAAGAGGATATTTACGAGTCTGACGGAGCTGCCAACCCAGTTCAGAATCCTCAACCGGAGAATGATAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>107 103 85 78 73 68 60 49 48 37 36 29 29 27 26 24 23 22 21 14 12 9 9 6 3 2</canonical_bands>
                <polymorphic_bands>140 107 85 78 73 68 60 49 48 36 29 29 27 26 24 23 22 21 14 12 9 9 6 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTAAATTCGAATATTGGTGTC</pcr_primer_p1>
		<pcr_primer_p2>CGATTAGTTGCTTTTTGAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTGTAAATTCGAATATTGGTGTCTTTGATGAGAACGAGTTTCTTCTCCCACCTGCGGACTTTTTCCAATGAGTTGATCACCTGAACAAAAGGATATTTATTGTTAGAATAGGACCACAAAATTATACCTTTCGGAGCTCGTCTTTTGAACGGTTTCTCGTTTCTGCGCGATGGGATCGATTTGCCGAGTACATATGTAAAATATGAAATTAAGAAAACACAAAAAAAAACTCAAAAAGCAACTAATCG</canonical_amplicon>
		<polymorphic_amplicon>TTGTAAATTCGAATATTGGTGTCTTTGATGAGAACGAGTTTCTTCTCCCACCTGCGGACTTTTTCCAATGAGTTGATCACCTGAACAAAAGGATATTTATTGTTAGAATAGGACCRCAAAATTATACCTTTCGGAGCTCGTCTTTTGAACGGTTTCTCGTTTCTGCGCGATGGGATCGATTTGCCGAGTACATATGTAAAATATGAAATTAAGAAAACACAAAAAAAAACTCAAAAAGCAACTAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22604</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>175640</contig_pos>
        <strand>+</strand>
        <context>TCTCTAATGC[A/G]TGACGATGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAAATTTGTTTAGGGGGAGCAAACTCTTCCGTCTCTCACTCTCTAATGC</left_flank>
        <right_flank>TGACGATGGAGCGCATTTGCATTTCCGTGTCATTTCAATTTTATTCTGCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACACTCGTGGAGTCTTGCGAGTTCTCAGCTGATGGAATCTGATTGCTCTCCTCGTCAACTTCTTTGATTTGAGCCTTTGGTGGAGCCATGATATTTTGAGCGCTCACTGAAATAGGATACTTTGAAAATCGATAAATCGTCCAGGTTGTTACCTGGAACCCATTTGTAAATTCGAATATTGGTGTCTTTGATGAGAACGAGTTTCTTCTCCCACCTGCGGACTTTTTCCAATGAGTTGATCACCTGAACAAAAGGATATTTATTGTTAGAATAGGACCACAAAATTATACCTTTCGGAGCTCGTCTTTTGAACGGTTTCTCGTTTCTGCGCGATGGGATCGATTTGCCGAGTACATATGTAAAATATGAAATTAAGAAAACACAAAAAAAAACTCAAAAAGCAACTAATCGGAGAGCACTGAAAGAAAAAAAAGCGAGAACTTTGTTCAAAATTTGTTTAGGGGGAGCAAACTCTTCCGTCTCTCACTCTCTAATGCGTGACGATGGAGCGCATTTGCATTTCCGTGTCATTTCAATTTTATTCTGCGATTCGATTTTGTTTCGCAACAAATAACCTAGTTTTTGCTAAATTTATCATATTTTGCGCATATAAATATACTGTTGAATGCTTACACTCATTTTTCGTTATATTCTTAATTGAAATTTCTCTTTCAGTTCGCTTCAAAACCTTGTGAAATGTCGACAATCGGAAAAGAGGATATTTACGAGTCTGACGGAGCTGCCAACCCAGTTCAGAATCCTCAACCGGAGAATGATACTCCAAATCATCCAGATATCGAATTGGTAAATTTGTGAAATGGGTATCTTCTCCGATAACCCAGTTTTTTACAGGTTTCTGTCGATATTGACGAGGCACTGAAGCAATACAAAGGTCGTGTTCTCAACTTATCTTCTATCGGTATTTCTACCCTAAAAGTCCATATTCATATAATTCATATTCAGATTTCTCTGATTCAATCGCCAAGAAGCGCCGCCAC</canonical>
            <polymorphic>TGACACTCGTGGAGTCTTGCGAGTTCTCAGCTGATGGAATCTGATTGCTCTCCTCGTCAACTTCTTTGATTTGAGCCTTTGGTGGAGCCATGATATTTTGAGCGCTCACTGAAATAGGATACTTTGAAAATCGATAAATCGTCCAGGTTGTTACCTGGAACCCATTTGTAAATTCGAATATTGGTGTCTTTGATGAGAACGAGTTTCTTCTCCCACCTGCGGACTTTTTCCAATGAGTTGATCACCTGAACAAAAGGATATTTATTGTTAGAATAGGACCACAAAATTATACCTTTCGGAGCTCGTCTTTTGAACGGTTTCTCGTTTCTGCGCGATGGGATCGATTTGCCGAGTACATATGTAAAATATGAAATTAAGAAAACACAAAAAAAAACTCAAAAAGCAACTAATCGGAGAGCACTGAAAGAAAAAAAAGCGAGAACTTTGTTCAAAATTTGTTTAGGGGGAGCAAACTCTTCCGTCTCTCACTCTCTAATGCRTGACGATGGAGCGCATTTGCATTTCCGTGTCATTTCAATTTTATTCTGCGATTCGATTTTGTTTCGCAACAAATAACCTAGTTTTTGCTAAATTTATCATATTTTGCGCATATAAATATACTGTTGAATGCTTACACTCATTTTTCGTTATATTCTTAATTGAAATTTCTCTTTCAGTTCGCTTCAAAACCTTGTGAAATGTCGACAATCGGAAAAGAGGATATTTACGAGTCTGACGGAGCTGCCAACCCAGTTCAGAATCCTCAACCGGAGAATGATACTCCAAATCATCCAGATATCGAATTGGTAAATTTGTGAAATGGGTATCTTCTCCGATAACCCAGTTTTTTACAGGTTTCTGTCGATATTGACGAGGCACTGAAGCAATACAAAGGTCGTGTTCTCAACTTATCTTCTATCGGTATTTCTACCCTAAAAGTCCATATTCATATAATTCATATTCAGATTTCTCTGATTCAATCGCCAAGAAGCGCCGCCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>121 107 103 99 78 73 68 61 60 37 36 29 29 27 24 22 14 6 5 1</canonical_bands>
                <polymorphic_bands>121 107 103 99 78 73 68 61 60 41 37 36 29 29 24 22 6 5 1</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 350 149</canonical_bands>
                <polymorphic_bands>851 149</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAACTTTGTTCAAAATTTGTT</pcr_primer_p1>
		<pcr_primer_p2>GAAGCGAACTGAAAGAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAGAACTTTGTTCAAAATTTGTTTAGGGGGAGCAAACTCTTCCGTCTCTCACTCTCTAATGCGTGACGATGGAGCGCATTTGCATTTCCGTGTCATTTCAATTTTATTCTGCGATTCGATTTTGTTTCGCAACAAATAACCTAGTTTTTGCTAAATTTATCATATTTTGCGCATATAAATATACTGTTGAATGCTTACACTCATTTTTCGTTATATTCTTAATTGAAATTTCTCTTTCAGTTCGCTTC</canonical_amplicon>
		<polymorphic_amplicon>GAGAACTTTGTTCAAAATTTGTTTAGGGGGAGCAAACTCTTCCGTCTCTCACTCTCTAATGCRTGACGATGGAGCGCATTTGCATTTCCGTGTCATTTCAATTTTATTCTGCGATTCGATTTTGTTTCGCAACAAATAACCTAGTTTTTGCTAAATTTATCATATTTTGCGCATATAAATATACTGTTGAATGCTTACACTCATTTTTCGTTATATTCTTAATTGAAATTTCTCTTTCAGTTCGCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22605</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>175776</contig_pos>
        <strand>+</strand>
        <context>GAATGCTTAC[A/T]CTCATTTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGCTAAATTTATCATATTTTGCGCATATAAATATACTGTTGAATGCTTAC</left_flank>
        <right_flank>CTCATTTTTCGTTATATTCTTAATTGAAATTTCTCTTTCAGTTCGCTTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCGTCCAGGTTGTTACCTGGAACCCATTTGTAAATTCGAATATTGGTGTCTTTGATGAGAACGAGTTTCTTCTCCCACCTGCGGACTTTTTCCAATGAGTTGATCACCTGAACAAAAGGATATTTATTGTTAGAATAGGACCACAAAATTATACCTTTCGGAGCTCGTCTTTTGAACGGTTTCTCGTTTCTGCGCGATGGGATCGATTTGCCGAGTACATATGTAAAATATGAAATTAAGAAAACACAAAAAAAAACTCAAAAAGCAACTAATCGGAGAGCACTGAAAGAAAAAAAAGCGAGAACTTTGTTCAAAATTTGTTTAGGGGGAGCAAACTCTTCCGTCTCTCACTCTCTAATGCGTGACGATGGAGCGCATTTGCATTTCCGTGTCATTTCAATTTTATTCTGCGATTCGATTTTGTTTCGCAACAAATAACCTAGTTTTTGCTAAATTTATCATATTTTGCGCATATAAATATACTGTTGAATGCTTACACTCATTTTTCGTTATATTCTTAATTGAAATTTCTCTTTCAGTTCGCTTCAAAACCTTGTGAAATGTCGACAATCGGAAAAGAGGATATTTACGAGTCTGACGGAGCTGCCAACCCAGTTCAGAATCCTCAACCGGAGAATGATACTCCAAATCATCCAGATATCGAATTGGTAAATTTGTGAAATGGGTATCTTCTCCGATAACCCAGTTTTTTACAGGTTTCTGTCGATATTGACGAGGCACTGAAGCAATACAAAGGTCGTGTTCTCAACTTATCTTCTATCGGTATTTCTACCCTAAAAGTCCATATTCATATAATTCATATTCAGATTTCTCTGATTCAATCGCCAAGAAGCGCCGCCACGCCTTCGGAAACAACCAATACGTTCTGGAAGTTGCTGGAGCTGGATTCACAGGAATCGAGACACCAGCCGAGAAATTGAACCGTATCCTCTACGAAATCGCCGATTTGAATGAACAAATTCGGACCGACGACACTG</canonical>
            <polymorphic>AATCGTCCAGGTTGTTACCTGGAACCCATTTGTAAATTCGAATATTGGTGTCTTTGATGAGAACGAGTTTCTTCTCCCACCTGCGGACTTTTTCCAATGAGTTGATCACCTGAACAAAAGGATATTTATTGTTAGAATAGGACCACAAAATTATACCTTTCGGAGCTCGTCTTTTGAACGGTTTCTCGTTTCTGCGCGATGGGATCGATTTGCCGAGTACATATGTAAAATATGAAATTAAGAAAACACAAAAAAAAACTCAAAAAGCAACTAATCGGAGAGCACTGAAAGAAAAAAAAGCGAGAACTTTGTTCAAAATTTGTTTAGGGGGAGCAAACTCTTCCGTCTCTCACTCTCTAATGCGTGACGATGGAGCGCATTTGCATTTCCGTGTCATTTCAATTTTATTCTGCGATTCGATTTTGTTTCGCAACAAATAACCTAGTTTTTGCTAAATTTATCATATTTTGCGCATATAAATATACTGTTGAATGCTTACWCTCATTTTTCGTTATATTCTTAATTGAAATTTCTCTTTCAGTTCGCTTCAAAACCTTGTGAAATGTCGACAATCGGAAAAGAGGATATTTACGAGTCTGACGGAGCTGCCAACCCAGTTCAGAATCCTCAACCGGAGAATGATACTCCAAATCATCCAGATATCGAATTGGTAAATTTGTGAAATGGGTATCTTCTCCGATAACCCAGTTTTTTACAGGTTTCTGTCGATATTGACGAGGCACTGAAGCAATACAAAGGTCGTGTTCTCAACTTATCTTCTATCGGTATTTCTACCCTAAAAGTCCATATTCATATAATTCATATTCAGATTTCTCTGATTCAATCGCCAAGAAGCGCCGCCACGCCTTCGGAAACAACCAATACGTTCTGGAAGTTGCTGGAGCTGGATTCACAGGAATCGAGACACCAGCCGAGAAATTGAACCGTATCCTCTACGAAATCGCCGATTTGAATGAACAAATTCGGACCGACGACACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>121 107 103 99 70 68 61 60 50 50 37 36 29 29 27 22 14 14 3</canonical_bands>
                <polymorphic_bands>167 121 103 99 70 68 61 50 50 37 36 29 29 27 22 14 14 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCGTCTCTCACTCTCTAATG</pcr_primer_p1>
		<pcr_primer_p2>TAAATATCCTCTTTTCCGATTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCCGTCTCTCACTCTCTAATGCGTGACGATGGAGCGCATTTGCATTTCCGTGTCATTTCAATTTTATTCTGCGATTCGATTTTGTTTCGCAACAAATAACCTAGTTTTTGCTAAATTTATCATATTTTGCGCATATAAATATACTGTTGAATGCTTACACTCATTTTTCGTTATATTCTTAATTGAAATTTCTCTTTCAGTTCGCTTCAAAACCTTGTGAAATGTCGACAATCGGAAAAGAGGATATTTA</canonical_amplicon>
		<polymorphic_amplicon>TTCCGTCTCTCACTCTCTAATGCGTGACGATGGAGCGCATTTGCATTTCCGTGTCATTTCAATTTTATTCTGCGATTCGATTTTGTTTCGCAACAAATAACCTAGTTTTTGCTAAATTTATCATATTTTGCGCATATAAATATACTGTTGAATGCTTACWCTCATTTTTCGTTATATTCTTAATTGAAATTTCTCTTTCAGTTCGCTTCAAAACCTTGTGAAATGTCGACAATCGGAAAAGAGGATATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22606</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>175974</contig_pos>
        <strand>+</strand>
        <context>GTATCTTCTC[C/T]GATAACCCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAATCATCCAGATATCGAATTGGTAAATTTGTGAAATGGGTATCTTCTC</left_flank>
        <right_flank>GATAACCCAGTTTTTTACAGGTTTCTGTCGATATTGACGAGGCACTGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGGATCGATTTGCCGAGTACATATGTAAAATATGAAATTAAGAAAACACAAAAAAAAACTCAAAAAGCAACTAATCGGAGAGCACTGAAAGAAAAAAAAGCGAGAACTTTGTTCAAAATTTGTTTAGGGGGAGCAAACTCTTCCGTCTCTCACTCTCTAATGCGTGACGATGGAGCGCATTTGCATTTCCGTGTCATTTCAATTTTATTCTGCGATTCGATTTTGTTTCGCAACAAATAACCTAGTTTTTGCTAAATTTATCATATTTTGCGCATATAAATATACTGTTGAATGCTTACACTCATTTTTCGTTATATTCTTAATTGAAATTTCTCTTTCAGTTCGCTTCAAAACCTTGTGAAATGTCGACAATCGGAAAAGAGGATATTTACGAGTCTGACGGAGCTGCCAACCCAGTTCAGAATCCTCAACCGGAGAATGATACTCCAAATCATCCAGATATCGAATTGGTAAATTTGTGAAATGGGTATCTTCTCCGATAACCCAGTTTTTTACAGGTTTCTGTCGATATTGACGAGGCACTGAAGCAATACAAAGGTCGTGTTCTCAACTTATCTTCTATCGGTATTTCTACCCTAAAAGTCCATATTCATATAATTCATATTCAGATTTCTCTGATTCAATCGCCAAGAAGCGCCGCCACGCCTTCGGAAACAACCAATACGTTCTGGAAGTTGCTGGAGCTGGATTCACAGGAATCGAGACACCAGCCGAGAAATTGAACCGTATCCTCTACGAAATCGCCGATTTGAATGAACAAATTCGGACCGACGACACTGTGAAAACTGATCTTCTCAATGCTGAAGTTCTGGAGAATCTAGAGAAAGAGGTGAAGACGTTGCAAGGAGTTCAAGCAAATGGGAAGCCAACTGCTGTGAATCACGAAGTGGAACTTCCAAAAGTTCGCTCGGATTCAAAGGCAGCAGCTTTGGAGAATAGACTGAGAAGAATTGAGCAAGTAATTGGAAGTTCTGTGA</canonical>
            <polymorphic>ATGGGATCGATTTGCCGAGTACATATGTAAAATATGAAATTAAGAAAACACAAAAAAAAACTCAAAAAGCAACTAATCGGAGAGCACTGAAAGAAAAAAAAGCGAGAACTTTGTTCAAAATTTGTTTAGGGGGAGCAAACTCTTCCGTCTCTCACTCTCTAATGCGTGACGATGGAGCGCATTTGCATTTCCGTGTCATTTCAATTTTATTCTGCGATTCGATTTTGTTTCGCAACAAATAACCTAGTTTTTGCTAAATTTATCATATTTTGCGCATATAAATATACTGTTGAATGCTTACACTCATTTTTCGTTATATTCTTAATTGAAATTTCTCTTTCAGTTCGCTTCAAAACCTTGTGAAATGTCGACAATCGGAAAAGAGGATATTTACGAGTCTGACGGAGCTGCCAACCCAGTTCAGAATCCTCAACCGGAGAATGATACTCCAAATCATCCAGATATCGAATTGGTAAATTTGTGAAATGGGTATCTTCTCYGATAACCCAGTTTTTTACAGGTTTCTGTCGATATTGACGAGGCACTGAAGCAATACAAAGGTCGTGTTCTCAACTTATCTTCTATCGGTATTTCTACCCTAAAAGTCCATATTCATATAATTCATATTCAGATTTCTCTGATTCAATCGCCAAGAAGCGCCGCCACGCCTTCGGAAACAACCAATACGTTCTGGAAGTTGCTGGAGCTGGATTCACAGGAATCGAGACACCAGCCGAGAAATTGAACCGTATCCTCTACGAAATCGCCGATTTGAATGAACAAATTCGGACCGACGACACTGTGAAAACTGATCTTCTCAATGCTGAAGTTCTGGAGAATCTAGAGAAAGAGGTGAAGACGTTGCAAGGAGTTCAAGCAAATGGGAAGCCAACTGCTGTGAATCACGAAGTGGAACTTCCAAAAGTTCGCTCGGATTCAAAGGCAGCAGCTTTGGAGAATAGACTGAGAAGAATTGAGCAAGTAATTGGAAGTTCTGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATCGGAAAAGAGGATATTTAC</pcr_primer_p1>
		<pcr_primer_p2>TGAATATGGACTTTTAGGGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAATCGGAAAAGAGGATATTTACGAGTCTGACGGAGCTGCCAACCCAGTTCAGAATCCTCAACCGGAGAATGATACTCCAAATCATCCAGATATCGAATTGGTAAATTTGTGAAATGGGTATCTTCTCCGATAACCCAGTTTTTTACAGGTTTCTGTCGATATTGACGAGGCACTGAAGCAATACAAAGGTCGTGTTCTCAACTTATCTTCTATCGGTATTTCTACCCTAAAAGTCCATATTCA</canonical_amplicon>
		<polymorphic_amplicon>CAATCGGAAAAGAGGATATTTACGAGTCTGACGGAGCTGCCAACCCAGTTCAGAATCCTCAACCGGAGAATGATACTCCAAATCATCCAGATATCGAATTGGTAAATTTGTGAAATGGGTATCTTCTCYGATAACCCAGTTTTTTACAGGTTTCTGTCGATATTGACGAGGCACTGAAGCAATACAAAGGTCGTGTTCTCAACTTATCTTCTATCGGTATTTCTACCCTAAAAGTCCATATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22607</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>178110</contig_pos>
        <strand></strand>
        <context>AGCMCTRAAA[C/A]ATTGACATGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTCGTGTGTGCTCTCGTTTAAAAAAAAACGGATTGAAGGGAGCCCTAAAA</left_flank>
        <right_flank>ATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGGTAATCGG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTCTCGAAATAACTTCGAAGTCGAGTATAATCCATTTCCTTCTCCATATAACATCCAATTCCCTTGACCCCTTCATCATAATAGTTGAAATGATACATGATGTTTGAGGTGTTTTTGAAGAAGTCTCGAAACGTTCCCATGTAGAAAGTGATAAATTGATGGGCACTTTTTGTTCGGATCATTTTGGGATACAGCGATCTAGAATCGCTAACGAAGTTCTAGAAATTTAACTATAACCAGGTCACTTATAAGAATATTACCGGGCTAACCGCATTATCTACATATACAACGAGACAGGTTAGAAATATAAGTACCTCCACGATTCTCATCGGAACAAGAATCAAAATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGACGAGATTCGTGTGTGCTCTCGTTTAAAAAAAAACGGATTGAAGGGAGCCCTAAAACATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGGTAATCGGTGGGCTTTTTCGAGATCGAACTTTAAAAACAAATGTCTTCGCCGTGAATTGAAATCTCGTCGGCTAAATGTGAGAAGCCGAATATGTCAAAAATTGTAATAATTCGGATGTTTTCCTCGTTCTTACGATTTTCGCAATTAAATTTCATTTTTCTGTAAAAAAAGGATTCTTGAGATGTTAGCGATTATGTTTCTACCGAAAAATCTAAATTTTGTTCAGCAAATCACACTAAATTCACAGAAATTAGTTTCGTGCAATACAGTAAATATCGGATTTAGGGGCGGAGCCTCGTAAATCGACACGAACGCCTCCCGCGGTGCTTTTTCCGGGCCGTTCTTTTAAATAAATATTTCCACCGTTTTTTTCGATTAAATGCAGAAACCACTGAGTAGCGACCTGATAGTTCAGCTTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAAT</canonical>
            <polymorphic>ATCTCTCGAAATAACTTCGAAGTCGAGTATAATCCATTTCCTTCTCCATATAACATCCAATTCCCTTGACCCCTTCATCATAATAGTTGAAATGATACATGATGTTTGAGGTGTTTTTGAAGAAGTCTCGAAACGTTCCCATGTAGAAAGTGATAAATTGATGGGCACTTTTTGTTCGGATCATTTTGGGATACAGCGATCTAGAATCGCTAACGAAGTTCTAGAAATTTAACTATAACCAGGTCACTTATAAGAATATTACCGGGCTAACCGCATTATCTACATATACAACGAGACAGGTTAGAAATATAAGTACCTCCACGATTCTCATCGGAACAAGAATCAAAATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGACGAGATTCGTGTGTGCTCTCGTTTAAAAAAAAACGGATTGAAGGGAGCCCTAAAAMATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGGTAATCGGTGGGCTTTTTCGAGATCGAACTTTAAAAACAAATGTCTTCGCCGTGAATTGAAATCTCGTCGGCTAAATGTGAGAAGCCGAATATGTCAAAAATTGTAATAATTCGGATGTTTTCCTCGTTCTTACGATTTTCGCAATTAAATTTCATTTTTCTGTAAAAAAAGGATTCTTGAGATGTTAGCGATTATGTTTCTACCGAAAAATCTAAATTTTGTTCAGCAAATCACACTAAATTCACAGAAATTAGTTTCGTGCAATACAGTAAATATCGGATTTAGGGGCGGAGCCTCGTAAATCGACACGAACGCCTCCCGCGGTGCTTTTTCCGGGCCGTTCTTTTAAATAAATATTTCCACCGTTTTTTTCGATTAAATGCAGAAACCACTGAGTAGCGACCTGATAGTTCAGCTTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>496 412 92</canonical_bands>
                <polymorphic_bands>490 412 98</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTAAAAGGAGCGGAGTC</pcr_primer_p1>
		<pcr_primer_p2>CGAAGACATTTGTTTTTAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGACGAGATTCGTGTGTGCTCTCGTTTAAAAAAAAACGGATTGAAGGGAGCCCTAAAACATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGGTAATCGGTGGGCTTTTTCGAGATCGAACTTTAAAAACAAATGTCTTCG</canonical_amplicon>
		<polymorphic_amplicon>AATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGACGAGATTCGTGTGTGCTCTCGTTTAAAAAAAAACGGATTGAAGGGAGCCCTAAAAMATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGGTAATCGGTGGGCTTTTTCGAGATCGAACTTTAAAAACAAATGTCTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22608</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>178106</contig_pos>
        <strand></strand>
        <context>AGGGAGCMCT[A/G]AAAMATTGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGATTCGTGTGTGCTCTCGTTTAAAAAAAAACGGATTGAAGGGAGCCCT</left_flank>
        <right_flank>AAACATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGGTAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATATCTCTCGAAATAACTTCGAAGTCGAGTATAATCCATTTCCTTCTCCATATAACATCCAATTCCCTTGACCCCTTCATCATAATAGTTGAAATGATACATGATGTTTGAGGTGTTTTTGAAGAAGTCTCGAAACGTTCCCATGTAGAAAGTGATAAATTGATGGGCACTTTTTGTTCGGATCATTTTGGGATACAGCGATCTAGAATCGCTAACGAAGTTCTAGAAATTTAACTATAACCAGGTCACTTATAAGAATATTACCGGGCTAACCGCATTATCTACATATACAACGAGACAGGTTAGAAATATAAGTACCTCCACGATTCTCATCGGAACAAGAATCAAAATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGACGAGATTCGTGTGTGCTCTCGTTTAAAAAAAAACGGATTGAAGGGAGCCCTAAAACATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGGTAATCGGTGGGCTTTTTCGAGATCGAACTTTAAAAACAAATGTCTTCGCCGTGAATTGAAATCTCGTCGGCTAAATGTGAGAAGCCGAATATGTCAAAAATTGTAATAATTCGGATGTTTTCCTCGTTCTTACGATTTTCGCAATTAAATTTCATTTTTCTGTAAAAAAAGGATTCTTGAGATGTTAGCGATTATGTTTCTACCGAAAAATCTAAATTTTGTTCAGCAAATCACACTAAATTCACAGAAATTAGTTTCGTGCAATACAGTAAATATCGGATTTAGGGGCGGAGCCTCGTAAATCGACACGAACGCCTCCCGCGGTGCTTTTTCCGGGCCGTTCTTTTAAATAAATATTTCCACCGTTTTTTTCGATTAAATGCAGAAACCACTGAGTAGCGACCTGATAGTTCAGCTTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCA</canonical>
            <polymorphic>GCATATCTCTCGAAATAACTTCGAAGTCGAGTATAATCCATTTCCTTCTCCATATAACATCCAATTCCCTTGACCCCTTCATCATAATAGTTGAAATGATACATGATGTTTGAGGTGTTTTTGAAGAAGTCTCGAAACGTTCCCATGTAGAAAGTGATAAATTGATGGGCACTTTTTGTTCGGATCATTTTGGGATACAGCGATCTAGAATCGCTAACGAAGTTCTAGAAATTTAACTATAACCAGGTCACTTATAAGAATATTACCGGGCTAACCGCATTATCTACATATACAACGAGACAGGTTAGAAATATAAGTACCTCCACGATTCTCATCGGAACAAGAATCAAAATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGACGAGATTCGTGTGTGCTCTCGTTTAAAAAAAAACGGATTGAAGGGAGCCCTRAAACATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGGTAATCGGTGGGCTTTTTCGAGATCGAACTTTAAAAACAAATGTCTTCGCCGTGAATTGAAATCTCGTCGGCTAAATGTGAGAAGCCGAATATGTCAAAAATTGTAATAATTCGGATGTTTTCCTCGTTCTTACGATTTTCGCAATTAAATTTCATTTTTCTGTAAAAAAAGGATTCTTGAGATGTTAGCGATTATGTTTCTACCGAAAAATCTAAATTTTGTTCAGCAAATCACACTAAATTCACAGAAATTAGTTTCGTGCAATACAGTAAATATCGGATTTAGGGGCGGAGCCTCGTAAATCGACACGAACGCCTCCCGCGGTGCTTTTTCCGGGCCGTTCTTTTAAATAAATATTTCCACCGTTTTTTTCGATTAAATGCAGAAACCACTGAGTAGCGACCTGATAGTTCAGCTTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTAAAAGGAGCGGAGTC</pcr_primer_p1>
		<pcr_primer_p2>CGAAGACATTTGTTTTTAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGACGAGATTCGTGTGTGCTCTCGTTTAAAAAAAAACGGATTGAAGGGAGCCCTAAAACATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGGTAATCGGTGGGCTTTTTCGAGATCGAACTTTAAAAACAAATGTCTTCG</canonical_amplicon>
		<polymorphic_amplicon>AATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGACGAGATTCGTGTGTGCTCTCGTTTAAAAAAAAACGGATTGAAGGGAGCCCTRAAACATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGGTAATCGGTGGGCTTTTTCGAGATCGAACTTTAAAAACAAATGTCTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22609</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>178103</contig_pos>
        <strand></strand>
        <context>TGAAGGGAGC[C/A]CTRAAAMATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GACGAGATTCGTGTGTGCTCTCGTTTAAAAAAAAACGGATTGAAGGGAGC</left_flank>
        <right_flank>CTAAAACATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGGCATATCTCTCGAAATAACTTCGAAGTCGAGTATAATCCATTTCCTTCTCCATATAACATCCAATTCCCTTGACCCCTTCATCATAATAGTTGAAATGATACATGATGTTTGAGGTGTTTTTGAAGAAGTCTCGAAACGTTCCCATGTAGAAAGTGATAAATTGATGGGCACTTTTTGTTCGGATCATTTTGGGATACAGCGATCTAGAATCGCTAACGAAGTTCTAGAAATTTAACTATAACCAGGTCACTTATAAGAATATTACCGGGCTAACCGCATTATCTACATATACAACGAGACAGGTTAGAAATATAAGTACCTCCACGATTCTCATCGGAACAAGAATCAAAATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGACGAGATTCGTGTGTGCTCTCGTTTAAAAAAAAACGGATTGAAGGGAGCCCTAAAACATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGGTAATCGGTGGGCTTTTTCGAGATCGAACTTTAAAAACAAATGTCTTCGCCGTGAATTGAAATCTCGTCGGCTAAATGTGAGAAGCCGAATATGTCAAAAATTGTAATAATTCGGATGTTTTCCTCGTTCTTACGATTTTCGCAATTAAATTTCATTTTTCTGTAAAAAAAGGATTCTTGAGATGTTAGCGATTATGTTTCTACCGAAAAATCTAAATTTTGTTCAGCAAATCACACTAAATTCACAGAAATTAGTTTCGTGCAATACAGTAAATATCGGATTTAGGGGCGGAGCCTCGTAAATCGACACGAACGCCTCCCGCGGTGCTTTTTCCGGGCCGTTCTTTTAAATAAATATTTCCACCGTTTTTTTCGATTAAATGCAGAAACCACTGAGTAGCGACCTGATAGTTCAGCTTAAAGGTGGTGTACGGTGAAATTTTTTATTGCA</canonical>
            <polymorphic>GTGGCATATCTCTCGAAATAACTTCGAAGTCGAGTATAATCCATTTCCTTCTCCATATAACATCCAATTCCCTTGACCCCTTCATCATAATAGTTGAAATGATACATGATGTTTGAGGTGTTTTTGAAGAAGTCTCGAAACGTTCCCATGTAGAAAGTGATAAATTGATGGGCACTTTTTGTTCGGATCATTTTGGGATACAGCGATCTAGAATCGCTAACGAAGTTCTAGAAATTTAACTATAACCAGGTCACTTATAAGAATATTACCGGGCTAACCGCATTATCTACATATACAACGAGACAGGTTAGAAATATAAGTACCTCCACGATTCTCATCGGAACAAGAATCAAAATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGACGAGATTCGTGTGTGCTCTCGTTTAAAAAAAAACGGATTGAAGGGAGCMCTAAAACATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGGTAATCGGTGGGCTTTTTCGAGATCGAACTTTAAAAACAAATGTCTTCGCCGTGAATTGAAATCTCGTCGGCTAAATGTGAGAAGCCGAATATGTCAAAAATTGTAATAATTCGGATGTTTTCCTCGTTCTTACGATTTTCGCAATTAAATTTCATTTTTCTGTAAAAAAAGGATTCTTGAGATGTTAGCGATTATGTTTCTACCGAAAAATCTAAATTTTGTTCAGCAAATCACACTAAATTCACAGAAATTAGTTTCGTGCAATACAGTAAATATCGGATTTAGGGGCGGAGCCTCGTAAATCGACACGAACGCCTCCCGCGGTGCTTTTTCCGGGCCGTTCTTTTAAATAAATATTTCCACCGTTTTTTTCGATTAAATGCAGAAACCACTGAGTAGCGACCTGATAGTTCAGCTTAAAGGTGGTGTACGGTGAAATTTTTTATTGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>500 294 174 32</canonical_bands>
                <polymorphic_bands>532 294 174</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>497 345 158</canonical_bands>
                <polymorphic_bands>842 158</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>273 209 146 79 78 59 44 41 35 22 14</canonical_bands>
                <polymorphic_bands>273 209 146 120 78 59 44 35 22 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTAAAAGGAGCGGAGTC</pcr_primer_p1>
		<pcr_primer_p2>CGAAGACATTTGTTTTTAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGACGAGATTCGTGTGTGCTCTCGTTTAAAAAAAAACGGATTGAAGGGAGCCCTAAAACATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGGTAATCGGTGGGCTTTTTCGAGATCGAACTTTAAAAACAAATGTCTTCG</canonical_amplicon>
		<polymorphic_amplicon>AATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGACGAGATTCGTGTGTGCTCTCGTTTAAAAAAAAACGGATTGAAGGGAGCMCTAAAACATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGGTAATCGGTGGGCTTTTTCGAGATCGAACTTTAAAAACAAATGTCTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22610</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>178090</contig_pos>
        <strand></strand>
        <context>AAAAAAAACG[G/A]ATTGAAGGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTAGGTTACGAATGACGAGATTCGTGTGTGCTCTCGTTTAAAAAAAAACG</left_flank>
        <right_flank>ATTGAAGGGAGCCCTAAAACATTGACATGCAAATGGGGGAATATAATGGG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCACGATGAGTTGTGGCATATCTCTCGAAATAACTTCGAAGTCGAGTATAATCCATTTCCTTCTCCATATAACATCCAATTCCCTTGACCCCTTCATCATAATAGTTGAAATGATACATGATGTTTGAGGTGTTTTTGAAGAAGTCTCGAAACGTTCCCATGTAGAAAGTGATAAATTGATGGGCACTTTTTGTTCGGATCATTTTGGGATACAGCGATCTAGAATCGCTAACGAAGTTCTAGAAATTTAACTATAACCAGGTCACTTATAAGAATATTACCGGGCTAACCGCATTATCTACATATACAACGAGACAGGTTAGAAATATAAGTACCTCCACGATTCTCATCGGAACAAGAATCAAAATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGACGAGATTCGTGTGTGCTCTCGTTTAAAAAAAAACGGATTGAAGGGAGCCCTAAAACATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGGTAATCGGTGGGCTTTTTCGAGATCGAACTTTAAAAACAAATGTCTTCGCCGTGAATTGAAATCTCGTCGGCTAAATGTGAGAAGCCGAATATGTCAAAAATTGTAATAATTCGGATGTTTTCCTCGTTCTTACGATTTTCGCAATTAAATTTCATTTTTCTGTAAAAAAAGGATTCTTGAGATGTTAGCGATTATGTTTCTACCGAAAAATCTAAATTTTGTTCAGCAAATCACACTAAATTCACAGAAATTAGTTTCGTGCAATACAGTAAATATCGGATTTAGGGGCGGAGCCTCGTAAATCGACACGAACGCCTCCCGCGGTGCTTTTTCCGGGCCGTTCTTTTAAATAAATATTTCCACCGTTTTTTTCGATTAAATGCAGAAACCACTGAGTAGCGACCTGATAGTTCAGCTTAAAGGTGGTGTACGGTGAA</canonical>
            <polymorphic>GTCACGATGAGTTGTGGCATATCTCTCGAAATAACTTCGAAGTCGAGTATAATCCATTTCCTTCTCCATATAACATCCAATTCCCTTGACCCCTTCATCATAATAGTTGAAATGATACATGATGTTTGAGGTGTTTTTGAAGAAGTCTCGAAACGTTCCCATGTAGAAAGTGATAAATTGATGGGCACTTTTTGTTCGGATCATTTTGGGATACAGCGATCTAGAATCGCTAACGAAGTTCTAGAAATTTAACTATAACCAGGTCACTTATAAGAATATTACCGGGCTAACCGCATTATCTACATATACAACGAGACAGGTTAGAAATATAAGTACCTCCACGATTCTCATCGGAACAAGAATCAAAATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGACGAGATTCGTGTGTGCTCTCGTTTAAAAAAAAACGRATTGAAGGGAGCCCTAAAACATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGGTAATCGGTGGGCTTTTTCGAGATCGAACTTTAAAAACAAATGTCTTCGCCGTGAATTGAAATCTCGTCGGCTAAATGTGAGAAGCCGAATATGTCAAAAATTGTAATAATTCGGATGTTTTCCTCGTTCTTACGATTTTCGCAATTAAATTTCATTTTTCTGTAAAAAAAGGATTCTTGAGATGTTAGCGATTATGTTTCTACCGAAAAATCTAAATTTTGTTCAGCAAATCACACTAAATTCACAGAAATTAGTTTCGTGCAATACAGTAAATATCGGATTTAGGGGCGGAGCCTCGTAAATCGACACGAACGCCTCCCGCGGTGCTTTTTCCGGGCCGTTCTTTTAAATAAATATTTCCACCGTTTTTTTCGATTAAATGCAGAAACCACTGAGTAGCGACCTGATAGTTCAGCTTAAAGGTGGTGTACGGTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTAAAAGGAGCGGAGTC</pcr_primer_p1>
		<pcr_primer_p2>CGAAGACATTTGTTTTTAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGACGAGATTCGTGTGTGCTCTCGTTTAAAAAAAAACGGATTGAAGGGAGCCCTAAAACATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGGTAATCGGTGGGCTTTTTCGAGATCGAACTTTAAAAACAAATGTCTTCG</canonical_amplicon>
		<polymorphic_amplicon>AATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGACGAGATTCGTGTGTGCTCTCGTTTAAAAAAAAACGRATTGAAGGGAGCCCTAAAACATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGGTAATCGGTGGGCTTTTTCGAGATCGAACTTTAAAAACAAATGTCTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22611</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>178079</contig_pos>
        <strand>+</strand>
        <context>GCTCTCGTTT[A/C]AAAAAAAACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCTGAAAATTGTAGGTTACGAATGACGAGATTCGTGTGTGCTCTCGTTT</left_flank>
        <right_flank>AAAAAAAACGGATTGAAGGGAGCCCTAAAACATTGACATGCAAATGGGGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGATTTCTGGGTCACGATGAGTTGTGGCATATCTCTCGAAATAACTTCGAAGTCGAGTATAATCCATTTCCTTCTCCATATAACATCCAATTCCCTTGACCCCTTCATCATAATAGTTGAAATGATACATGATGTTTGAGGTGTTTTTGAAGAAGTCTCGAAACGTTCCCATGTAGAAAGTGATAAATTGATGGGCACTTTTTGTTCGGATCATTTTGGGATACAGCGATCTAGAATCGCTAACGAAGTTCTAGAAATTTAACTATAACCAGGTCACTTATAAGAATATTACCGGGCTAACCGCATTATCTACATATACAACGAGACAGGTTAGAAATATAAGTACCTCCACGATTCTCATCGGAACAAGAATCAAAATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGACGAGATTCGTGTGTGCTCTCGTTTAAAAAAAAACGGATTGAAGGGAGCCCTAAAACATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGGTAATCGGTGGGCTTTTTCGAGATCGAACTTTAAAAACAAATGTCTTCGCCGTGAATTGAAATCTCGTCGGCTAAATGTGAGAAGCCGAATATGTCAAAAATTGTAATAATTCGGATGTTTTCCTCGTTCTTACGATTTTCGCAATTAAATTTCATTTTTCTGTAAAAAAAGGATTCTTGAGATGTTAGCGATTATGTTTCTACCGAAAAATCTAAATTTTGTTCAGCAAATCACACTAAATTCACAGAAATTAGTTTCGTGCAATACAGTAAATATCGGATTTAGGGGCGGAGCCTCGTAAATCGACACGAACGCCTCCCGCGGTGCTTTTTCCGGGCCGTTCTTTTAAATAAATATTTCCACCGTTTTTTTCGATTAAATGCAGAAACCACTGAGTAGCGACCTGATAGTTCAGCTTAAAGGTGG</canonical>
            <polymorphic>TTGATTTCTGGGTCACGATGAGTTGTGGCATATCTCTCGAAATAACTTCGAAGTCGAGTATAATCCATTTCCTTCTCCATATAACATCCAATTCCCTTGACCCCTTCATCATAATAGTTGAAATGATACATGATGTTTGAGGTGTTTTTGAAGAAGTCTCGAAACGTTCCCATGTAGAAAGTGATAAATTGATGGGCACTTTTTGTTCGGATCATTTTGGGATACAGCGATCTAGAATCGCTAACGAAGTTCTAGAAATTTAACTATAACCAGGTCACTTATAAGAATATTACCGGGCTAACCGCATTATCTACATATACAACGAGACAGGTTAGAAATATAAGTACCTCCACGATTCTCATCGGAACAAGAATCAAAATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGACGAGATTCGTGTGTGCTCTCGTTTMAAAAAAAACGGATTGAAGGGAGCCCTAAAACATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGGTAATCGGTGGGCTTTTTCGAGATCGAACTTTAAAAACAAATGTCTTCGCCGTGAATTGAAATCTCGTCGGCTAAATGTGAGAAGCCGAATATGTCAAAAATTGTAATAATTCGGATGTTTTCCTCGTTCTTACGATTTTCGCAATTAAATTTCATTTTTCTGTAAAAAAAGGATTCTTGAGATGTTAGCGATTATGTTTCTACCGAAAAATCTAAATTTTGTTCAGCAAATCACACTAAATTCACAGAAATTAGTTTCGTGCAATACAGTAAATATCGGATTTAGGGGCGGAGCCTCGTAAATCGACACGAACGCCTCCCGCGGTGCTTTTTCCGGGCCGTTCTTTTAAATAAATATTTCCACCGTTTTTTTCGATTAAATGCAGAAACCACTGAGTAGCGACCTGATAGTTCAGCTTAAAGGTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>382 316 117 106 79</canonical_bands>
                <polymorphic_bands>382 316 223 79</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>260 201 121 117 115 106 41 30 9</canonical_bands>
                <polymorphic_bands>260 223 201 121 115 41 30 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTAAAAGGAGCGGAGTC</pcr_primer_p1>
		<pcr_primer_p2>CGAAGACATTTGTTTTTAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGACGAGATTCGTGTGTGCTCTCGTTTAAAAAAAAACGGATTGAAGGGAGCCCTAAAACATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGGTAATCGGTGGGCTTTTTCGAGATCGAACTTTAAAAACAAATGTCTTCG</canonical_amplicon>
		<polymorphic_amplicon>AATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGACGAGATTCGTGTGTGCTCTCGTTTMAAAAAAAACGGATTGAAGGGAGCCCTAAAACATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGGTAATCGGTGGGCTTTTTCGAGATCGAACTTTAAAAACAAATGTCTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22612</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>178065</contig_pos>
        <strand>+</strand>
        <context>CGAGATTCGT[A/G]TGTGCTCTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGACGAGATTCGT</left_flank>
        <right_flank>TGTGCTCTCGTTTAAAAAAAAACGGATTGAAGGGAGCCCTAAAACATTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGCAGCGATCACTTTGATTTCTGGGTCACGATGAGTTGTGGCATATCTCTCGAAATAACTTCGAAGTCGAGTATAATCCATTTCCTTCTCCATATAACATCCAATTCCCTTGACCCCTTCATCATAATAGTTGAAATGATACATGATGTTTGAGGTGTTTTTGAAGAAGTCTCGAAACGTTCCCATGTAGAAAGTGATAAATTGATGGGCACTTTTTGTTCGGATCATTTTGGGATACAGCGATCTAGAATCGCTAACGAAGTTCTAGAAATTTAACTATAACCAGGTCACTTATAAGAATATTACCGGGCTAACCGCATTATCTACATATACAACGAGACAGGTTAGAAATATAAGTACCTCCACGATTCTCATCGGAACAAGAATCAAAATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGACGAGATTCGTGTGTGCTCTCGTTTAAAAAAAAACGGATTGAAGGGAGCCCTAAAACATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGGTAATCGGTGGGCTTTTTCGAGATCGAACTTTAAAAACAAATGTCTTCGCCGTGAATTGAAATCTCGTCGGCTAAATGTGAGAAGCCGAATATGTCAAAAATTGTAATAATTCGGATGTTTTCCTCGTTCTTACGATTTTCGCAATTAAATTTCATTTTTCTGTAAAAAAAGGATTCTTGAGATGTTAGCGATTATGTTTCTACCGAAAAATCTAAATTTTGTTCAGCAAATCACACTAAATTCACAGAAATTAGTTTCGTGCAATACAGTAAATATCGGATTTAGGGGCGGAGCCTCGTAAATCGACACGAACGCCTCCCGCGGTGCTTTTTCCGGGCCGTTCTTTTAAATAAATATTTCCACCGTTTTTTTCGATTAAATGCAGAAACCACTGAGTAGCGACCTGATAGTT</canonical>
            <polymorphic>AGGCAGCGATCACTTTGATTTCTGGGTCACGATGAGTTGTGGCATATCTCTCGAAATAACTTCGAAGTCGAGTATAATCCATTTCCTTCTCCATATAACATCCAATTCCCTTGACCCCTTCATCATAATAGTTGAAATGATACATGATGTTTGAGGTGTTTTTGAAGAAGTCTCGAAACGTTCCCATGTAGAAAGTGATAAATTGATGGGCACTTTTTGTTCGGATCATTTTGGGATACAGCGATCTAGAATCGCTAACGAAGTTCTAGAAATTTAACTATAACCAGGTCACTTATAAGAATATTACCGGGCTAACCGCATTATCTACATATACAACGAGACAGGTTAGAAATATAAGTACCTCCACGATTCTCATCGGAACAAGAATCAAAATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGACGAGATTCGTRTGTGCTCTCGTTTAAAAAAAAACGGATTGAAGGGAGCCCTAAAACATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGGTAATCGGTGGGCTTTTTCGAGATCGAACTTTAAAAACAAATGTCTTCGCCGTGAATTGAAATCTCGTCGGCTAAATGTGAGAAGCCGAATATGTCAAAAATTGTAATAATTCGGATGTTTTCCTCGTTCTTACGATTTTCGCAATTAAATTTCATTTTTCTGTAAAAAAAGGATTCTTGAGATGTTAGCGATTATGTTTCTACCGAAAAATCTAAATTTTGTTCAGCAAATCACACTAAATTCACAGAAATTAGTTTCGTGCAATACAGTAAATATCGGATTTAGGGGCGGAGCCTCGTAAATCGACACGAACGCCTCCCGCGGTGCTTTTTCCGGGCCGTTCTTTTAAATAAATATTTCCACCGTTTTTTTCGATTAAATGCAGAAACCACTGAGTAGCGACCTGATAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>154 117 93 86 79 75 48 47 44 39 36 29 26 21 18 17 17 15 12 12 9 2 2 2</canonical_bands>
                <polymorphic_bands>154 117 93 86 79 75 52 47 44 39 36 29 26 21 18 17 17 15 12 12 9 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTAAAAGGAGCGGAGTC</pcr_primer_p1>
		<pcr_primer_p2>CGAAGACATTTGTTTTTAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGACGAGATTCGTGTGTGCTCTCGTTTAAAAAAAAACGGATTGAAGGGAGCCCTAAAACATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGGTAATCGGTGGGCTTTTTCGAGATCGAACTTTAAAAACAAATGTCTTCG</canonical_amplicon>
		<polymorphic_amplicon>AATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGACGAGATTCGTRTGTGCTCTCGTTTAAAAAAAAACGGATTGAAGGGAGCCCTAAAACATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGGTAATCGGTGGGCTTTTTCGAGATCGAACTTTAAAAACAAATGTCTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22613</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>177956</contig_pos>
        <strand>+</strand>
        <context>ACAAGAATCA[A/G]AATTTAAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAGGTTAGAAATATAAGTACCTCCACGATTCTCATCGGAACAAGAATCA</left_flank>
        <right_flank>AATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATTTACCACCCTAACTACTATATGAAAATGGTCTTTAAATCCCAACCACTTCTGTTTGGTGGTGACGTGGAATTCGGCAGTCATGTGTGCACCTCCTCTGATCATCAAGGCAGCGATCACTTTGATTTCTGGGTCACGATGAGTTGTGGCATATCTCTCGAAATAACTTCGAAGTCGAGTATAATCCATTTCCTTCTCCATATAACATCCAATTCCCTTGACCCCTTCATCATAATAGTTGAAATGATACATGATGTTTGAGGTGTTTTTGAAGAAGTCTCGAAACGTTCCCATGTAGAAAGTGATAAATTGATGGGCACTTTTTGTTCGGATCATTTTGGGATACAGCGATCTAGAATCGCTAACGAAGTTCTAGAAATTTAACTATAACCAGGTCACTTATAAGAATATTACCGGGCTAACCGCATTATCTACATATACAACGAGACAGGTTAGAAATATAAGTACCTCCACGATTCTCATCGGAACAAGAATCAAAATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGACGAGATTCGTGTGTGCTCTCGTTTAAAAAAAAACGGATTGAAGGGAGCCCTAAAACATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGGTAATCGGTGGGCTTTTTCGAGATCGAACTTTAAAAACAAATGTCTTCGCCGTGAATTGAAATCTCGTCGGCTAAATGTGAGAAGCCGAATATGTCAAAAATTGTAATAATTCGGATGTTTTCCTCGTTCTTACGATTTTCGCAATTAAATTTCATTTTTCTGTAAAAAAAGGATTCTTGAGATGTTAGCGATTATGTTTCTACCGAAAAATCTAAATTTTGTTCAGCAAATCACACTAAATTCACAGAAATTAGTTTCGTGCAATACAGTAAATATCGGATTTAGGGGCGGAGCCTCGTAAAT</canonical>
            <polymorphic>ACATTTACCACCCTAACTACTATATGAAAATGGTCTTTAAATCCCAACCACTTCTGTTTGGTGGTGACGTGGAATTCGGCAGTCATGTGTGCACCTCCTCTGATCATCAAGGCAGCGATCACTTTGATTTCTGGGTCACGATGAGTTGTGGCATATCTCTCGAAATAACTTCGAAGTCGAGTATAATCCATTTCCTTCTCCATATAACATCCAATTCCCTTGACCCCTTCATCATAATAGTTGAAATGATACATGATGTTTGAGGTGTTTTTGAAGAAGTCTCGAAACGTTCCCATGTAGAAAGTGATAAATTGATGGGCACTTTTTGTTCGGATCATTTTGGGATACAGCGATCTAGAATCGCTAACGAAGTTCTAGAAATTTAACTATAACCAGGTCACTTATAAGAATATTACCGGGCTAACCGCATTATCTACATATACAACGAGACAGGTTAGAAATATAAGTACCTCCACGATTCTCATCGGAACAAGAATCARAATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGACGAGATTCGTGTGTGCTCTCGTTTAAAAAAAAACGGATTGAAGGGAGCCCTAAAACATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGGTAATCGGTGGGCTTTTTCGAGATCGAACTTTAAAAACAAATGTCTTCGCCGTGAATTGAAATCTCGTCGGCTAAATGTGAGAAGCCGAATATGTCAAAAATTGTAATAATTCGGATGTTTTCCTCGTTCTTACGATTTTCGCAATTAAATTTCATTTTTCTGTAAAAAAAGGATTCTTGAGATGTTAGCGATTATGTTTCTACCGAAAAATCTAAATTTTGTTCAGCAAATCACACTAAATTCACAGAAATTAGTTTCGTGCAATACAGTAAATATCGGATTTAGGGGCGGAGCCTCGTAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>344 307 121 72 67 65 24</canonical_bands>
                <polymorphic_bands>465 307 72 67 65 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCTAGAATCGCTAACGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>GTCATTCGTAACCTACAATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATCTAGAATCGCTAACGAAGTTCTAGAAATTTAACTATAACCAGGTCACTTATAAGAATATTACCGGGCTAACCGCATTATCTACATATACAACGAGACAGGTTAGAAATATAAGTACCTCCACGATTCTCATCGGAACAAGAATCAAAATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGAC</canonical_amplicon>
		<polymorphic_amplicon>GATCTAGAATCGCTAACGAAGTTCTAGAAATTTAACTATAACCAGGTCACTTATAAGAATATTACCGGGCTAACCGCATTATCTACATATACAACGAGACAGGTTAGAAATATAAGTACCTCCACGATTCTCATCGGAACAAGAATCARAATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22614</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>177928</contig_pos>
        <strand>+</strand>
        <context>TATAAGTACC[A/T]CCACGATTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAACCGCATTATCTACATATACAACGAGACAGGTTAGAAATATAAGTACC</left_flank>
        <right_flank>CCACGATTCTCATCGGAACAAGAATCAAAATTTAAAAGGAGCGGAGTCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATAATATCAAAAATTTCCGTAAACTCACATTTACCACCCTAACTACTATATGAAAATGGTCTTTAAATCCCAACCACTTCTGTTTGGTGGTGACGTGGAATTCGGCAGTCATGTGTGCACCTCCTCTGATCATCAAGGCAGCGATCACTTTGATTTCTGGGTCACGATGAGTTGTGGCATATCTCTCGAAATAACTTCGAAGTCGAGTATAATCCATTTCCTTCTCCATATAACATCCAATTCCCTTGACCCCTTCATCATAATAGTTGAAATGATACATGATGTTTGAGGTGTTTTTGAAGAAGTCTCGAAACGTTCCCATGTAGAAAGTGATAAATTGATGGGCACTTTTTGTTCGGATCATTTTGGGATACAGCGATCTAGAATCGCTAACGAAGTTCTAGAAATTTAACTATAACCAGGTCACTTATAAGAATATTACCGGGCTAACCGCATTATCTACATATACAACGAGACAGGTTAGAAATATAAGTACCTCCACGATTCTCATCGGAACAAGAATCAAAATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGACGAGATTCGTGTGTGCTCTCGTTTAAAAAAAAACGGATTGAAGGGAGCCCTAAAACATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGGTAATCGGTGGGCTTTTTCGAGATCGAACTTTAAAAACAAATGTCTTCGCCGTGAATTGAAATCTCGTCGGCTAAATGTGAGAAGCCGAATATGTCAAAAATTGTAATAATTCGGATGTTTTCCTCGTTCTTACGATTTTCGCAATTAAATTTCATTTTTCTGTAAAAAAAGGATTCTTGAGATGTTAGCGATTATGTTTCTACCGAAAAATCTAAATTTTGTTCAGCAAATCACACTAAATTCACAGAAATTAGTTTCGTGCAATACAGTAAATA</canonical>
            <polymorphic>TAATAATATCAAAAATTTCCGTAAACTCACATTTACCACCCTAACTACTATATGAAAATGGTCTTTAAATCCCAACCACTTCTGTTTGGTGGTGACGTGGAATTCGGCAGTCATGTGTGCACCTCCTCTGATCATCAAGGCAGCGATCACTTTGATTTCTGGGTCACGATGAGTTGTGGCATATCTCTCGAAATAACTTCGAAGTCGAGTATAATCCATTTCCTTCTCCATATAACATCCAATTCCCTTGACCCCTTCATCATAATAGTTGAAATGATACATGATGTTTGAGGTGTTTTTGAAGAAGTCTCGAAACGTTCCCATGTAGAAAGTGATAAATTGATGGGCACTTTTTGTTCGGATCATTTTGGGATACAGCGATCTAGAATCGCTAACGAAGTTCTAGAAATTTAACTATAACCAGGTCACTTATAAGAATATTACCGGGCTAACCGCATTATCTACATATACAACGAGACAGGTTAGAAATATAAGTACCWCCACGATTCTCATCGGAACAAGAATCAAAATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGACGAGATTCGTGTGTGCTCTCGTTTAAAAAAAAACGGATTGAAGGGAGCCCTAAAACATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGGTAATCGGTGGGCTTTTTCGAGATCGAACTTTAAAAACAAATGTCTTCGCCGTGAATTGAAATCTCGTCGGCTAAATGTGAGAAGCCGAATATGTCAAAAATTGTAATAATTCGGATGTTTTCCTCGTTCTTACGATTTTCGCAATTAAATTTCATTTTTCTGTAAAAAAAGGATTCTTGAGATGTTAGCGATTATGTTTCTACCGAAAAATCTAAATTTTGTTCAGCAAATCACACTAAATTCACAGAAATTAGTTTCGTGCAATACAGTAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCTAGAATCGCTAACGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>GTCATTCGTAACCTACAATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATCTAGAATCGCTAACGAAGTTCTAGAAATTTAACTATAACCAGGTCACTTATAAGAATATTACCGGGCTAACCGCATTATCTACATATACAACGAGACAGGTTAGAAATATAAGTACCTCCACGATTCTCATCGGAACAAGAATCAAAATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGAC</canonical_amplicon>
		<polymorphic_amplicon>GATCTAGAATCGCTAACGAAGTTCTAGAAATTTAACTATAACCAGGTCACTTATAAGAATATTACCGGGCTAACCGCATTATCTACATATACAACGAGACAGGTTAGAAATATAAGTACCWCCACGATTCTCATCGGAACAAGAATCAAAATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22615</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>185523</contig_pos>
        <strand>+</strand>
        <context>TTTCCGGAGA[C/T]CAATTGCACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAATTCGGAAATTAATGTAATATGGCGCGGCGACACTGTTTCCGGAGA</left_flank>
        <right_flank>CAATTGCACATCCTTATATTGACTCCATCATCAATCGAAAAATTAAAAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCAGAGGGAAGCAAAGACAAAAAAGCTGGAGGTTTCTAGGTCATTTGCTTGTCCACGTGGACTCCACGGCTAGCCAAGCGAGACTCTTGTAGGAAATTCCATGCGCCTTTAATGTTGAATTGATTTACCGGCTAGAATTTTGATTTTGAGCTCTTAATTGACTTGAGCTCGTTTTGAGTAATGTTGAGCTTGTAAATCGCTTCAAAGCTAAAGGAGCACAACGTTTCCTGTAAGGGATCCGCTTGGCCGGCTGTGTAGTCCAGCGAGTGACCTGGAAAACTTCAGCGATTTTGGCGACCGCGGAGAAAATTGCCATTTTGCTTCCCTCTTAAAAACCTCAAATAGTAAAATAATAAAAAATTAAAAAGAGAAAAAAAAATTGAGAGGAGAAGGGTGTGTCCAGGAACAGTCGTCAAATTTTGGGGGATAAATGGGGGATGTTTTTCCTTCAATTCGGAAATTAATGTAATATGGCGCGGCGACACTGTTTCCGGAGATCAATTGCACATCCTTATATTGACTCCATCATCAATCGAAAAATTAAAAAGGGTAGAACCGCTTCACCAATTGGACCCTTCTGACGTCTTCAAAATCAATTTGGTTTCTTCATTTTCGCCGCAAAAAATCGGCTTCCGATTACTAGCAAATTGACTTCTTGAGGTGGAGAAGAAGACAAGACAAATGAACCATATTGATGAGCTTCTTGACTAGATTTCAGACTGCAAAAAGTTTAAGAAATTTATACTAGTTACAGTAATCCCTTACCTCTCCCGAACAACAAAAATCCATTTGAAAAGTGATTATCTCTTCATTGGATTCTTTGAAATTCGATAGGAATAATTACCTGGAAAAAGTCATTCAATTTTTAAGAAAAATTTCAGCTGAAAAGTGAAAAGTTGAAAAGAGAAAAGTGAAAATGAGCGCTCCACTCTTATCAGCAGTTTGATAAGAAAGTTGAGCACAAAAACTCTTTTCAAGAGCAAAACTGGCCAGCAGTC</canonical>
            <polymorphic>ATTCAGAGGGAAGCAAAGACAAAAAAGCTGGAGGTTTCTAGGTCATTTGCTTGTCCACGTGGACTCCACGGCTAGCCAAGCGAGACTCTTGTAGGAAATTCCATGCGCCTTTAATGTTGAATTGATTTACCGGCTAGAATTTTGATTTTGAGCTCTTAATTGACTTGAGCTCGTTTTGAGTAATGTTGAGCTTGTAAATCGCTTCAAAGCTAAAGGAGCACAACGTTTCCTGTAAGGGATCCGCTTGGCCGGCTGTGTAGTCCAGCGAGTGACCTGGAAAACTTCAGCGATTTTGGCGACCGCGGAGAAAATTGCCATTTTGCTTCCCTCTTAAAAACCTCAAATAGTAAAATAATAAAAAATTAAAAAGAGAAAAAAAAATTGAGAGGAGAAGGGTGTGTCCAGGAACAGTCGTCAAATTTTGGGGGATAAATGGGGGATGTTTTTCCTTCAATTCGGAAATTAATGTAATATGGCGCGGCGACACTGTTTCCGGAGAYCAATTGCACATCCTTATATTGACTCCATCATCAATCGAAAAATTAAAAAGGGTAGAACCGCTTCACCAATTGGACCCTTCTGACGTCTTCAAAATCAATTTGGTTTCTTCATTTTCGCCGCAAAAAATCGGCTTCCGATTACTAGCAAATTGACTTCTTGAGGTGGAGAAGAAGACAAGACAAATGAACCATATTGATGAGCTTCTTGACTAGATTTCAGACTGCAAAAAGTTTAAGAAATTTATACTAGTTACAGTAATCCCTTACCTCTCCCGAACAACAAAAATCCATTTGAAAAGTGATTATCTCTTCATTGGATTCTTTGAAATTCGATAGGAATAATTACCTGGAAAAAGTCATTCAATTTTTAAGAAAAATTTCAGCTGAAAAGTGAAAAGTTGAAAAGAGAAAAGTGAAAATGAGCGCTCCACTCTTATCAGCAGTTTGATAAGAAAGTTGAGCACAAAAACTCTTTTCAAGAGCAAAACTGGCCAGCAGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>503 260 237</canonical_bands>
                <polymorphic_bands>763 237</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGCTTCCCTCTTAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GGTTCTACCCTTTTTAATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGCTTCCCTCTTAAAAACCTCAAATAGTAAAATAATAAAAAATTAAAAAGAGAAAAAAAAATTGAGAGGAGAAGGGTGTGTCCAGGAACAGTCGTCAAATTTTGGGGGATAAATGGGGGATGTTTTTCCTTCAATTCGGAAATTAATGTAATATGGCGCGGCGACACTGTTTCCGGAGATCAATTGCACATCCTTATATTGACTCCATCATCAATCGAAAAATTAAAAAGGGTAGAACC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGCTTCCCTCTTAAAAACCTCAAATAGTAAAATAATAAAAAATTAAAAAGAGAAAAAAAAATTGAGAGGAGAAGGGTGTGTCCAGGAACAGTCGTCAAATTTTGGGGGATAAATGGGGGATGTTTTTCCTTCAATTCGGAAATTAATGTAATATGGCGCGGCGACACTGTTTCCGGAGAYCAATTGCACATCCTTATATTGACTCCATCATCAATCGAAAAATTAAAAAGGGTAGAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22616</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>185915</contig_pos>
        <strand>+</strand>
        <context>AGCTGAAAAG[C/T]GAAAAGTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTACCTGGAAAAAGTCATTCAATTTTTAAGAAAAATTTCAGCTGAAAAG</left_flank>
        <right_flank>GAAAAGTTGAAAAGAGAAAAGTGAAAATGAGCGCTCCACTCTTATCAGCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGGTGTGTCCAGGAACAGTCGTCAAATTTTGGGGGATAAATGGGGGATGTTTTTCCTTCAATTCGGAAATTAATGTAATATGGCGCGGCGACACTGTTTCCGGAGATCAATTGCACATCCTTATATTGACTCCATCATCAATCGAAAAATTAAAAAGGGTAGAACCGCTTCACCAATTGGACCCTTCTGACGTCTTCAAAATCAATTTGGTTTCTTCATTTTCGCCGCAAAAAATCGGCTTCCGATTACTAGCAAATTGACTTCTTGAGGTGGAGAAGAAGACAAGACAAATGAACCATATTGATGAGCTTCTTGACTAGATTTCAGACTGCAAAAAGTTTAAGAAATTTATACTAGTTACAGTAATCCCTTACCTCTCCCGAACAACAAAAATCCATTTGAAAAGTGATTATCTCTTCATTGGATTCTTTGAAATTCGATAGGAATAATTACCTGGAAAAAGTCATTCAATTTTTAAGAAAAATTTCAGCTGAAAAGTGAAAAGTTGAAAAGAGAAAAGTGAAAATGAGCGCTCCACTCTTATCAGCAGTTTGATAAGAAAGTTGAGCACAAAAACTCTTTTCAAGAGCAAAACTGGCCAGCAGTCTTGAAAGGGCACACAACTGAGCACCTTCTTCTTCTCCAACATTTAGGCCACGCCCACTTTTGGTTTCCATAGAGAGCAACAAAAGAGTGTGGAGACGCAGAGAAACTTGGGGGAAATATAATTAGAGAGTTTATCAAGCCGGAATGAGAAACGAATGGGAACACCTAATATGAGATTAGGGTTCTCATTTTAGTTTGGTTTCGTGGAGCTGTGTGAAATATGCAGAATAGAAGATTTGGCATTTCCAAGAAATAGGGAAGAATGGAATGGAAGGTGGGAAGAATGATGGAAACAATTTTATGACTATGGGAATCTGAAAAAAGGAAGAATCGGGAACCGTTTTTTTGTAAGAAAAGGAAATTTCGAAATTCTGAAATTTCAGAGAAAAAGAA</canonical>
            <polymorphic>AGGGTGTGTCCAGGAACAGTCGTCAAATTTTGGGGGATAAATGGGGGATGTTTTTCCTTCAATTCGGAAATTAATGTAATATGGCGCGGCGACACTGTTTCCGGAGATCAATTGCACATCCTTATATTGACTCCATCATCAATCGAAAAATTAAAAAGGGTAGAACCGCTTCACCAATTGGACCCTTCTGACGTCTTCAAAATCAATTTGGTTTCTTCATTTTCGCCGCAAAAAATCGGCTTCCGATTACTAGCAAATTGACTTCTTGAGGTGGAGAAGAAGACAAGACAAATGAACCATATTGATGAGCTTCTTGACTAGATTTCAGACTGCAAAAAGTTTAAGAAATTTATACTAGTTACAGTAATCCCTTACCTCTCCCGAACAACAAAAATCCATTTGAAAAGTGATTATCTCTTCATTGGATTCTTTGAAATTCGATAGGAATAATTACCTGGAAAAAGTCATTCAATTTTTAAGAAAAATTTCAGCTGAAAAGYGAAAAGTTGAAAAGAGAAAAGTGAAAATGAGCGCTCCACTCTTATCAGCAGTTTGATAAGAAAGTTGAGCACAAAAACTCTTTTCAAGAGCAAAACTGGCCAGCAGTCTTGAAAGGGCACACAACTGAGCACCTTCTTCTTCTCCAACATTTAGGCCACGCCCACTTTTGGTTTCCATAGAGAGCAACAAAAGAGTGTGGAGACGCAGAGAAACTTGGGGGAAATATAATTAGAGAGTTTATCAAGCCGGAATGAGAAACGAATGGGAACACCTAATATGAGATTAGGGTTCTCATTTTAGTTTGGTTTCGTGGAGCTGTGTGAAATATGCAGAATAGAAGATTTGGCATTTCCAAGAAATAGGGAAGAATGGAATGGAAGGTGGGAAGAATGATGGAAACAATTTTATGACTATGGGAATCTGAAAAAAGGAAGAATCGGGAACCGTTTTTTTGTAAGAAAAGGAAATTTCGAAATTCTGAAATTTCAGAGAAAAAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>136 116 100 92 86 72 61 57 48 42 33 33 27 22 22 15 10 8 6 6 2 2 2 2</canonical_bands>
                <polymorphic_bands>136 116 114 100 86 72 61 57 48 42 33 33 27 22 15 10 8 6 6 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATTACCTGGAAAAAGTCATTC</pcr_primer_p1>
		<pcr_primer_p2>ACACTCTTTTGTTGCTCTCTATG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAATTACCTGGAAAAAGTCATTCAATTTTTAAGAAAAATTTCAGCTGAAAAGTGAAAAGTTGAAAAGAGAAAAGTGAAAATGAGCGCTCCACTCTTATCAGCAGTTTGATAAGAAAGTTGAGCACAAAAACTCTTTTCAAGAGCAAAACTGGCCAGCAGTCTTGAAAGGGCACACAACTGAGCACCTTCTTCTTCTCCAACATTTAGGCCACGCCCACTTTTGGTTTCCATAGAGAGCAACAAAAGAGTGT</canonical_amplicon>
		<polymorphic_amplicon>TAATTACCTGGAAAAAGTCATTCAATTTTTAAGAAAAATTTCAGCTGAAAAGYGAAAAGTTGAAAAGAGAAAAGTGAAAATGAGCGCTCCACTCTTATCAGCAGTTTGATAAGAAAGTTGAGCACAAAAACTCTTTTCAAGAGCAAAACTGGCCAGCAGTCTTGAAAGGGCACACAACTGAGCACCTTCTTCTTCTCCAACATTTAGGCCACGCCCACTTTTGGTTTCCATAGAGAGCAACAAAAGAGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22617</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>185993</contig_pos>
        <strand>+</strand>
        <context>AGCACAAAAA[C/T]TCTTTTCAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAGCGCTCCACTCTTATCAGCAGTTTGATAAGAAAGTTGAGCACAAAAA</left_flank>
        <right_flank>TCTTTTCAAGAGCAAAACTGGCCAGCAGTCTTGAAAGGGCACACAACTGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATGGCGCGGCGACACTGTTTCCGGAGATCAATTGCACATCCTTATATTGACTCCATCATCAATCGAAAAATTAAAAAGGGTAGAACCGCTTCACCAATTGGACCCTTCTGACGTCTTCAAAATCAATTTGGTTTCTTCATTTTCGCCGCAAAAAATCGGCTTCCGATTACTAGCAAATTGACTTCTTGAGGTGGAGAAGAAGACAAGACAAATGAACCATATTGATGAGCTTCTTGACTAGATTTCAGACTGCAAAAAGTTTAAGAAATTTATACTAGTTACAGTAATCCCTTACCTCTCCCGAACAACAAAAATCCATTTGAAAAGTGATTATCTCTTCATTGGATTCTTTGAAATTCGATAGGAATAATTACCTGGAAAAAGTCATTCAATTTTTAAGAAAAATTTCAGCTGAAAAGTGAAAAGTTGAAAAGAGAAAAGTGAAAATGAGCGCTCCACTCTTATCAGCAGTTTGATAAGAAAGTTGAGCACAAAAACTCTTTTCAAGAGCAAAACTGGCCAGCAGTCTTGAAAGGGCACACAACTGAGCACCTTCTTCTTCTCCAACATTTAGGCCACGCCCACTTTTGGTTTCCATAGAGAGCAACAAAAGAGTGTGGAGACGCAGAGAAACTTGGGGGAAATATAATTAGAGAGTTTATCAAGCCGGAATGAGAAACGAATGGGAACACCTAATATGAGATTAGGGTTCTCATTTTAGTTTGGTTTCGTGGAGCTGTGTGAAATATGCAGAATAGAAGATTTGGCATTTCCAAGAAATAGGGAAGAATGGAATGGAAGGTGGGAAGAATGATGGAAACAATTTTATGACTATGGGAATCTGAAAAAAGGAAGAATCGGGAACCGTTTTTTTGTAAGAAAAGGAAATTTCGAAATTCTGAAATTTCAGAGAAAAAGAAAGTGACGAGGGTCTTCCAAATTCTGGAGTATAATGATTGTGAACACAACTAGATGCTTGAAAGTACATTTATAATATA</canonical>
            <polymorphic>ATATGGCGCGGCGACACTGTTTCCGGAGATCAATTGCACATCCTTATATTGACTCCATCATCAATCGAAAAATTAAAAAGGGTAGAACCGCTTCACCAATTGGACCCTTCTGACGTCTTCAAAATCAATTTGGTTTCTTCATTTTCGCCGCAAAAAATCGGCTTCCGATTACTAGCAAATTGACTTCTTGAGGTGGAGAAGAAGACAAGACAAATGAACCATATTGATGAGCTTCTTGACTAGATTTCAGACTGCAAAAAGTTTAAGAAATTTATACTAGTTACAGTAATCCCTTACCTCTCCCGAACAACAAAAATCCATTTGAAAAGTGATTATCTCTTCATTGGATTCTTTGAAATTCGATAGGAATAATTACCTGGAAAAAGTCATTCAATTTTTAAGAAAAATTTCAGCTGAAAAGTGAAAAGTTGAAAAGAGAAAAGTGAAAATGAGCGCTCCACTCTTATCAGCAGTTTGATAAGAAAGTTGAGCACAAAAAYTCTTTTCAAGAGCAAAACTGGCCAGCAGTCTTGAAAGGGCACACAACTGAGCACCTTCTTCTTCTCCAACATTTAGGCCACGCCCACTTTTGGTTTCCATAGAGAGCAACAAAAGAGTGTGGAGACGCAGAGAAACTTGGGGGAAATATAATTAGAGAGTTTATCAAGCCGGAATGAGAAACGAATGGGAACACCTAATATGAGATTAGGGTTCTCATTTTAGTTTGGTTTCGTGGAGCTGTGTGAAATATGCAGAATAGAAGATTTGGCATTTCCAAGAAATAGGGAAGAATGGAATGGAAGGTGGGAAGAATGATGGAAACAATTTTATGACTATGGGAATCTGAAAAAAGGAAGAATCGGGAACCGTTTTTTTGTAAGAAAAGGAAATTTCGAAATTCTGAAATTTCAGAGAAAAAGAAAGTGACGAGGGTCTTCCAAATTCTGGAGTATAATGATTGTGAACACAACTAGATGCTTGAAAGTACATTTATAATATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTACCTGGAAAAAGTCATTCA</pcr_primer_p1>
		<pcr_primer_p2>CACACTCTTTTGTTGCTCTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTACCTGGAAAAAGTCATTCAATTTTTAAGAAAAATTTCAGCTGAAAAGTGAAAAGTTGAAAAGAGAAAAGTGAAAATGAGCGCTCCACTCTTATCAGCAGTTTGATAAGAAAGTTGAGCACAAAAACTCTTTTCAAGAGCAAAACTGGCCAGCAGTCTTGAAAGGGCACACAACTGAGCACCTTCTTCTTCTCCAACATTTAGGCCACGCCCACTTTTGGTTTCCATAGAGAGCAACAAAAGAGTGTG</canonical_amplicon>
		<polymorphic_amplicon>ATTACCTGGAAAAAGTCATTCAATTTTTAAGAAAAATTTCAGCTGAAAAGTGAAAAGTTGAAAAGAGAAAAGTGAAAATGAGCGCTCCACTCTTATCAGCAGTTTGATAAGAAAGTTGAGCACAAAAAYTCTTTTCAAGAGCAAAACTGGCCAGCAGTCTTGAAAGGGCACACAACTGAGCACCTTCTTCTTCTCCAACATTTAGGCCACGCCCACTTTTGGTTTCCATAGAGAGCAACAAAAGAGTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22618</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>188156</contig_pos>
        <strand>+</strand>
        <context>AACAAAGAGA[C/T]AGGGAAACAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAATTTTAAAAGATTATTAGAAAAATGTAGAAAAAAAGCAACAAAGAGA</left_flank>
        <right_flank>AGGGAAACATAATAGTTAGGATAATAACAGGTTTAACAATGATGGAAATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTACAAAAGTCGAATGTGTGTTTGCATGCGAAAATATATTGAATGCCCGTTTCTCTTTTTTGTCCCTTTTTCCTTTCCCTATATACCGCCCCCTTTTTTCCATACATAATATTTTTATATTCGGCAAAAATCGTCCCTCCCTGACTGACGTGGCACAGCAAGCACACACACCGTACCACTCGGTTTCTGTGTCTCTCTCCCTGCTGATGCTCTCCCTCTCCTCTAGCATCGCTCCTCTCGCTCTTCCCGATTCACTTCATGATACGAATGTTTTATAATACGTGGTATATATGTAGCAAAGAGCGAAACGGGAGAAGTAGGAGGAGGAGAAGAATAGCGAGAACAGAATGGGGAAAGTAGGTGGTTGCTCTTGGACACCTTACTTACTACTCATGCACTTTATTGACGAAGAAACACTTTGTAAGGAAGAGAAAAAGAGGATAAACGAGAATTTTAAAAGATTATTAGAAAAATGTAGAAAAAAAGCAACAAAGAGATAGGGAAACATAATAGTTAGGATAATAACAGGTTTAACAATGATGGAAATGAAGGTGGAATTACTATAGAATGCCGAAAGAGTAACCGGGGGTATTTCCAAAACTGAAAGCCACCAGTCAAGAGCTGAGAAAAGAATAGGGGGCTACTACAAAAATGAAGCTTACGATATAAAGGAAAAAAAAAACGAAGTGAATAAATGGGAAAAAAGATATATTAATCGCGAGAACGCATTCCGAATGCTTTGCGGAATTTCTCATCGTAATTCTTCGACAGATCTTCAAGAATCAAGACAAGTGGATCTTGTGGGCGAGCCATGTTGTGGACTCCGACAGCGAGACGTTCGAGTATAGACTGAAAAATGTAATGCAATAATTGAAAGGGGAAGAGACAGGTGGAAACTCACCACAAAGTCGTGGAGCAAGAACCAGGCAACGTTGACATGCAAACCGTTGACTTCGGGAAGGAGTTGACGAGATCCGTGAACGTAGAAATCGTAGGCG</canonical>
            <polymorphic>TATTACAAAAGTCGAATGTGTGTTTGCATGCGAAAATATATTGAATGCCCGTTTCTCTTTTTTGTCCCTTTTTCCTTTCCCTATATACCGCCCCCTTTTTTCCATACATAATATTTTTATATTCGGCAAAAATCGTCCCTCCCTGACTGACGTGGCACAGCAAGCACACACACCGTACCACTCGGTTTCTGTGTCTCTCTCCCTGCTGATGCTCTCCCTCTCCTCTAGCATCGCTCCTCTCGCTCTTCCCGATTCACTTCATGATACGAATGTTTTATAATACGTGGTATATATGTAGCAAAGAGCGAAACGGGAGAAGTAGGAGGAGGAGAAGAATAGCGAGAACAGAATGGGGAAAGTAGGTGGTTGCTCTTGGACACCTTACTTACTACTCATGCACTTTATTGACGAAGAAACACTTTGTAAGGAAGAGAAAAAGAGGATAAACGAGAATTTTAAAAGATTATTAGAAAAATGTAGAAAAAAAGCAACAAAGAGAYAGGGAAACATAATAGTTAGGATAATAACAGGTTTAACAATGATGGAAATGAAGGTGGAATTACTATAGAATGCCGAAAGAGTAACCGGGGGTATTTCCAAAACTGAAAGCCACCAGTCAAGAGCTGAGAAAAGAATAGGGGGCTACTACAAAAATGAAGCTTACGATATAAAGGAAAAAAAAAACGAAGTGAATAAATGGGAAAAAAGATATATTAATCGCGAGAACGCATTCCGAATGCTTTGCGGAATTTCTCATCGTAATTCTTCGACAGATCTTCAAGAATCAAGACAAGTGGATCTTGTGGGCGAGCCATGTTGTGGACTCCGACAGCGAGACGTTCGAGTATAGACTGAAAAATGTAATGCAATAATTGAAAGGGGAAGAGACAGGTGGAAACTCACCACAAAGTCGTGGAGCAAGAACCAGGCAACGTTGACATGCAAACCGTTGACTTCGGGAAGGAGTTGACGAGATCCGTGAACGTAGAAATCGTAGGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTATTGACGAAGAAACACTTT</pcr_primer_p1>
		<pcr_primer_p2>GTAGTAGCCCCCTATTCTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTATTGACGAAGAAACACTTTGTAAGGAAGAGAAAAAGAGGATAAACGAGAATTTTAAAAGATTATTAGAAAAATGTAGAAAAAAAGCAACAAAGAGATAGGGAAACATAATAGTTAGGATAATAACAGGTTTAACAATGATGGAAATGAAGGTGGAATTACTATAGAATGCCGAAAGAGTAACCGGGGGTATTTCCAAAACTGAAAGCCACCAGTCAAGAGCTGAGAAAAGAATAGGGGGCTACTAC</canonical_amplicon>
		<polymorphic_amplicon>CTTTATTGACGAAGAAACACTTTGTAAGGAAGAGAAAAAGAGGATAAACGAGAATTTTAAAAGATTATTAGAAAAATGTAGAAAAAAAGCAACAAAGAGAYAGGGAAACATAATAGTTAGGATAATAACAGGTTTAACAATGATGGAAATGAAGGTGGAATTACTATAGAATGCCGAAAGAGTAACCGGGGGTATTTCCAAAACTGAAAGCCACCAGTCAAGAGCTGAGAAAAGAATAGGGGGCTACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22619</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>188094</contig_pos>
        <strand>+</strand>
        <context>GAAGAGAAAA[A/T]GAGGATAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTACTCATGCACTTTATTGACGAAGAAACACTTTGTAAGGAAGAGAAAA</left_flank>
        <right_flank>GAGGATAAACGAGAATTTTAAAAGATTATTAGAAAAATGTAGAAAAAAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACATCAGCTACTGTAGGTACTAGCAAACGATTTTCAATGAAAAGGCAATAATATGAAATATTATTACAAAAGTCGAATGTGTGTTTGCATGCGAAAATATATTGAATGCCCGTTTCTCTTTTTTGTCCCTTTTTCCTTTCCCTATATACCGCCCCCTTTTTTCCATACATAATATTTTTATATTCGGCAAAAATCGTCCCTCCCTGACTGACGTGGCACAGCAAGCACACACACCGTACCACTCGGTTTCTGTGTCTCTCTCCCTGCTGATGCTCTCCCTCTCCTCTAGCATCGCTCCTCTCGCTCTTCCCGATTCACTTCATGATACGAATGTTTTATAATACGTGGTATATATGTAGCAAAGAGCGAAACGGGAGAAGTAGGAGGAGGAGAAGAATAGCGAGAACAGAATGGGGAAAGTAGGTGGTTGCTCTTGGACACCTTACTTACTACTCATGCACTTTATTGACGAAGAAACACTTTGTAAGGAAGAGAAAAAGAGGATAAACGAGAATTTTAAAAGATTATTAGAAAAATGTAGAAAAAAAGCAACAAAGAGATAGGGAAACATAATAGTTAGGATAATAACAGGTTTAACAATGATGGAAATGAAGGTGGAATTACTATAGAATGCCGAAAGAGTAACCGGGGGTATTTCCAAAACTGAAAGCCACCAGTCAAGAGCTGAGAAAAGAATAGGGGGCTACTACAAAAATGAAGCTTACGATATAAAGGAAAAAAAAAACGAAGTGAATAAATGGGAAAAAAGATATATTAATCGCGAGAACGCATTCCGAATGCTTTGCGGAATTTCTCATCGTAATTCTTCGACAGATCTTCAAGAATCAAGACAAGTGGATCTTGTGGGCGAGCCATGTTGTGGACTCCGACAGCGAGACGTTCGAGTATAGACTGAAAAATGTAATGCAATAATTGAAAGGGGAAGAGACAGGTGGAAACTCACCACAAAGTCGTGGAGCAAGAACCAGGCAACGTTGA</canonical>
            <polymorphic>TACATCAGCTACTGTAGGTACTAGCAAACGATTTTCAATGAAAAGGCAATAATATGAAATATTATTACAAAAGTCGAATGTGTGTTTGCATGCGAAAATATATTGAATGCCCGTTTCTCTTTTTTGTCCCTTTTTCCTTTCCCTATATACCGCCCCCTTTTTTCCATACATAATATTTTTATATTCGGCAAAAATCGTCCCTCCCTGACTGACGTGGCACAGCAAGCACACACACCGTACCACTCGGTTTCTGTGTCTCTCTCCCTGCTGATGCTCTCCCTCTCCTCTAGCATCGCTCCTCTCGCTCTTCCCGATTCACTTCATGATACGAATGTTTTATAATACGTGGTATATATGTAGCAAAGAGCGAAACGGGAGAAGTAGGAGGAGGAGAAGAATAGCGAGAACAGAATGGGGAAAGTAGGTGGTTGCTCTTGGACACCTTACTTACTACTCATGCACTTTATTGACGAAGAAACACTTTGTAAGGAAGAGAAAAWGAGGATAAACGAGAATTTTAAAAGATTATTAGAAAAATGTAGAAAAAAAGCAACAAAGAGATAGGGAAACATAATAGTTAGGATAATAACAGGTTTAACAATGATGGAAATGAAGGTGGAATTACTATAGAATGCCGAAAGAGTAACCGGGGGTATTTCCAAAACTGAAAGCCACCAGTCAAGAGCTGAGAAAAGAATAGGGGGCTACTACAAAAATGAAGCTTACGATATAAAGGAAAAAAAAAACGAAGTGAATAAATGGGAAAAAAGATATATTAATCGCGAGAACGCATTCCGAATGCTTTGCGGAATTTCTCATCGTAATTCTTCGACAGATCTTCAAGAATCAAGACAAGTGGATCTTGTGGGCGAGCCATGTTGTGGACTCCGACAGCGAGACGTTCGAGTATAGACTGAAAAATGTAATGCAATAATTGAAAGGGGAAGAGACAGGTGGAAACTCACCACAAAGTCGTGGAGCAAGAACCAGGCAACGTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAGAATAGCGAGAACAGAAT</pcr_primer_p1>
		<pcr_primer_p2>CATTCTATAGTAATTCCACCTTCA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GAGAAGAATAGCGAGAACAGAATGGGGAAAGTAGGTGGTTGCTCTTGGACACCTTACTTACTACTCATGCACTTTATTGACGAAGAAACACTTTGTAAGGAAGAGAAAAAGAGGATAAACGAGAATTTTAAAAGATTATTAGAAAAATGTAGAAAAAAAGCAACAAAGAGATAGGGAAACATAATAGTTAGGATAATAACAGGTTTAACAATGATGGAAATGAAGGTGGAATTACTATAGAATG</canonical_amplicon>
		<polymorphic_amplicon>GAGAAGAATAGCGAGAACAGAATGGGGAAAGTAGGTGGTTGCTCTTGGACACCTTACTTACTACTCATGCACTTTATTGACGAAGAAACACTTTGTAAGGAAGAGAAAAWGAGGATAAACGAGAATTTTAAAAGATTATTAGAAAAATGTAGAAAAAAAGCAACAAAGAGATAGGGAAACATAATAGTTAGGATAATAACAGGTTTAACAATGATGGAAATGAAGGTGGAATTACTATAGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22620</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>188079</contig_pos>
        <strand>+</strand>
        <context>GAAACACTTT[G/T]TAAGGAAGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGGACACCTTACTTACTACTCATGCACTTTATTGACGAAGAAACACTTT</left_flank>
        <right_flank>TAAGGAAGAGAAAAAGAGGATAAACGAGAATTTTAAAAGATTATTAGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAAAGGGACCGGATACATCAGCTACTGTAGGTACTAGCAAACGATTTTCAATGAAAAGGCAATAATATGAAATATTATTACAAAAGTCGAATGTGTGTTTGCATGCGAAAATATATTGAATGCCCGTTTCTCTTTTTTGTCCCTTTTTCCTTTCCCTATATACCGCCCCCTTTTTTCCATACATAATATTTTTATATTCGGCAAAAATCGTCCCTCCCTGACTGACGTGGCACAGCAAGCACACACACCGTACCACTCGGTTTCTGTGTCTCTCTCCCTGCTGATGCTCTCCCTCTCCTCTAGCATCGCTCCTCTCGCTCTTCCCGATTCACTTCATGATACGAATGTTTTATAATACGTGGTATATATGTAGCAAAGAGCGAAACGGGAGAAGTAGGAGGAGGAGAAGAATAGCGAGAACAGAATGGGGAAAGTAGGTGGTTGCTCTTGGACACCTTACTTACTACTCATGCACTTTATTGACGAAGAAACACTTTGTAAGGAAGAGAAAAAGAGGATAAACGAGAATTTTAAAAGATTATTAGAAAAATGTAGAAAAAAAGCAACAAAGAGATAGGGAAACATAATAGTTAGGATAATAACAGGTTTAACAATGATGGAAATGAAGGTGGAATTACTATAGAATGCCGAAAGAGTAACCGGGGGTATTTCCAAAACTGAAAGCCACCAGTCAAGAGCTGAGAAAAGAATAGGGGGCTACTACAAAAATGAAGCTTACGATATAAAGGAAAAAAAAAACGAAGTGAATAAATGGGAAAAAAGATATATTAATCGCGAGAACGCATTCCGAATGCTTTGCGGAATTTCTCATCGTAATTCTTCGACAGATCTTCAAGAATCAAGACAAGTGGATCTTGTGGGCGAGCCATGTTGTGGACTCCGACAGCGAGACGTTCGAGTATAGACTGAAAAATGTAATGCAATAATTGAAAGGGGAAGAGACAGGTGGAAACTCACCACAAAGTCGTGGAGCAAGA</canonical>
            <polymorphic>ACAAAAGGGACCGGATACATCAGCTACTGTAGGTACTAGCAAACGATTTTCAATGAAAAGGCAATAATATGAAATATTATTACAAAAGTCGAATGTGTGTTTGCATGCGAAAATATATTGAATGCCCGTTTCTCTTTTTTGTCCCTTTTTCCTTTCCCTATATACCGCCCCCTTTTTTCCATACATAATATTTTTATATTCGGCAAAAATCGTCCCTCCCTGACTGACGTGGCACAGCAAGCACACACACCGTACCACTCGGTTTCTGTGTCTCTCTCCCTGCTGATGCTCTCCCTCTCCTCTAGCATCGCTCCTCTCGCTCTTCCCGATTCACTTCATGATACGAATGTTTTATAATACGTGGTATATATGTAGCAAAGAGCGAAACGGGAGAAGTAGGAGGAGGAGAAGAATAGCGAGAACAGAATGGGGAAAGTAGGTGGTTGCTCTTGGACACCTTACTTACTACTCATGCACTTTATTGACGAAGAAACACTTTKTAAGGAAGAGAAAAAGAGGATAAACGAGAATTTTAAAAGATTATTAGAAAAATGTAGAAAAAAAGCAACAAAGAGATAGGGAAACATAATAGTTAGGATAATAACAGGTTTAACAATGATGGAAATGAAGGTGGAATTACTATAGAATGCCGAAAGAGTAACCGGGGGTATTTCCAAAACTGAAAGCCACCAGTCAAGAGCTGAGAAAAGAATAGGGGGCTACTACAAAAATGAAGCTTACGATATAAAGGAAAAAAAAAACGAAGTGAATAAATGGGAAAAAAGATATATTAATCGCGAGAACGCATTCCGAATGCTTTGCGGAATTTCTCATCGTAATTCTTCGACAGATCTTCAAGAATCAAGACAAGTGGATCTTGTGGGCGAGCCATGTTGTGGACTCCGACAGCGAGACGTTCGAGTATAGACTGAAAAATGTAATGCAATAATTGAAAGGGGAAGAGACAGGTGGAAACTCACCACAAAGTCGTGGAGCAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAGAATAGCGAGAACAGAAT</pcr_primer_p1>
		<pcr_primer_p2>CATTCTATAGTAATTCCACCTTCA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GAGAAGAATAGCGAGAACAGAATGGGGAAAGTAGGTGGTTGCTCTTGGACACCTTACTTACTACTCATGCACTTTATTGACGAAGAAACACTTTGTAAGGAAGAGAAAAAGAGGATAAACGAGAATTTTAAAAGATTATTAGAAAAATGTAGAAAAAAAGCAACAAAGAGATAGGGAAACATAATAGTTAGGATAATAACAGGTTTAACAATGATGGAAATGAAGGTGGAATTACTATAGAATG</canonical_amplicon>
		<polymorphic_amplicon>GAGAAGAATAGCGAGAACAGAATGGGGAAAGTAGGTGGTTGCTCTTGGACACCTTACTTACTACTCATGCACTTTATTGACGAAGAAACACTTTKTAAGGAAGAGAAAAAGAGGATAAACGAGAATTTTAAAAGATTATTAGAAAAATGTAGAAAAAAAGCAACAAAGAGATAGGGAAACATAATAGTTAGGATAATAACAGGTTTAACAATGATGGAAATGAAGGTGGAATTACTATAGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22621</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>187883</contig_pos>
        <strand>+</strand>
        <context>CCTCTCCTCT[A/C]GCATCGCTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACCACTCGGTTTCTGTGTCTCTCTCCCTGCTGATGCTCTCCCTCTCCTCT</left_flank>
        <right_flank>GCATCGCTCCTCTCGCTCTTCCCGATTCACTTCATGATACGAATGTTTTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCATGCCTCCAAAACTATGGAAGCTACAAAAAAGTGGTCAACTACAAAAATGAAGCTGTTTTTTTGCTTAGTATATTCTGAAAATTTCAGAGAATTCAGAAAATTTTAACCTAGTTTTGTAGGGCCCTAAAAAGTTTTCGAAAAATAATTGGTTACTGTAGCTTGAAGGAAATTTTTTAAAAGAATGGTCTCGACACAAAAGGGACCGGATACATCAGCTACTGTAGGTACTAGCAAACGATTTTCAATGAAAAGGCAATAATATGAAATATTATTACAAAAGTCGAATGTGTGTTTGCATGCGAAAATATATTGAATGCCCGTTTCTCTTTTTTGTCCCTTTTTCCTTTCCCTATATACCGCCCCCTTTTTTCCATACATAATATTTTTATATTCGGCAAAAATCGTCCCTCCCTGACTGACGTGGCACAGCAAGCACACACACCGTACCACTCGGTTTCTGTGTCTCTCTCCCTGCTGATGCTCTCCCTCTCCTCTAGCATCGCTCCTCTCGCTCTTCCCGATTCACTTCATGATACGAATGTTTTATAATACGTGGTATATATGTAGCAAAGAGCGAAACGGGAGAAGTAGGAGGAGGAGAAGAATAGCGAGAACAGAATGGGGAAAGTAGGTGGTTGCTCTTGGACACCTTACTTACTACTCATGCACTTTATTGACGAAGAAACACTTTGTAAGGAAGAGAAAAAGAGGATAAACGAGAATTTTAAAAGATTATTAGAAAAATGTAGAAAAAAAGCAACAAAGAGATAGGGAAACATAATAGTTAGGATAATAACAGGTTTAACAATGATGGAAATGAAGGTGGAATTACTATAGAATGCCGAAAGAGTAACCGGGGGTATTTCCAAAACTGAAAGCCACCAGTCAAGAGCTGAGAAAAGAATAGGGGGCTACTACAAAAATGAAGCTTACGATATAAAGGAAAAAAAAAACGAAGTGAATAAATGGGAAAAAAGATATATTAATCGCGAGAAC</canonical>
            <polymorphic>CGCATGCCTCCAAAACTATGGAAGCTACAAAAAAGTGGTCAACTACAAAAATGAAGCTGTTTTTTTGCTTAGTATATTCTGAAAATTTCAGAGAATTCAGAAAATTTTAACCTAGTTTTGTAGGGCCCTAAAAAGTTTTCGAAAAATAATTGGTTACTGTAGCTTGAAGGAAATTTTTTAAAAGAATGGTCTCGACACAAAAGGGACCGGATACATCAGCTACTGTAGGTACTAGCAAACGATTTTCAATGAAAAGGCAATAATATGAAATATTATTACAAAAGTCGAATGTGTGTTTGCATGCGAAAATATATTGAATGCCCGTTTCTCTTTTTTGTCCCTTTTTCCTTTCCCTATATACCGCCCCCTTTTTTCCATACATAATATTTTTATATTCGGCAAAAATCGTCCCTCCCTGACTGACGTGGCACAGCAAGCACACACACCGTACCACTCGGTTTCTGTGTCTCTCTCCCTGCTGATGCTCTCCCTCTCCTCTMGCATCGCTCCTCTCGCTCTTCCCGATTCACTTCATGATACGAATGTTTTATAATACGTGGTATATATGTAGCAAAGAGCGAAACGGGAGAAGTAGGAGGAGGAGAAGAATAGCGAGAACAGAATGGGGAAAGTAGGTGGTTGCTCTTGGACACCTTACTTACTACTCATGCACTTTATTGACGAAGAAACACTTTGTAAGGAAGAGAAAAAGAGGATAAACGAGAATTTTAAAAGATTATTAGAAAAATGTAGAAAAAAAGCAACAAAGAGATAGGGAAACATAATAGTTAGGATAATAACAGGTTTAACAATGATGGAAATGAAGGTGGAATTACTATAGAATGCCGAAAGAGTAACCGGGGGTATTTCCAAAACTGAAAGCCACCAGTCAAGAGCTGAGAAAAGAATAGGGGGCTACTACAAAAATGAAGCTTACGATATAAAGGAAAAAAAAAACGAAGTGAATAAATGGGAAAAAAGATATATTAATCGCGAGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 266 120 112</canonical_bands>
                <polymorphic_bands>768 120 112</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTTTTATATTCGGCAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>TACTTTCCCCATTCTGTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATTTTTATATTCGGCAAAAATCGTCCCTCCCTGACTGACGTGGCACAGCAAGCACACACACCGTACCACTCGGTTTCTGTGTCTCTCTCCCTGCTGATGCTCTCCCTCTCCTCTAGCATCGCTCCTCTCGCTCTTCCCGATTCACTTCATGATACGAATGTTTTATAATACGTGGTATATATGTAGCAAAGAGCGAAACGGGAGAAGTAGGAGGAGGAGAAGAATAGCGAGAACAGAATGGGGAAAGTA</canonical_amplicon>
		<polymorphic_amplicon>TATTTTTATATTCGGCAAAAATCGTCCCTCCCTGACTGACGTGGCACAGCAAGCACACACACCGTACCACTCGGTTTCTGTGTCTCTCTCCCTGCTGATGCTCTCCCTCTCCTCTMGCATCGCTCCTCTCGCTCTTCCCGATTCACTTCATGATACGAATGTTTTATAATACGTGGTATATATGTAGCAAAGAGCGAAACGGGAGAAGTAGGAGGAGGAGAAGAATAGCGAGAACAGAATGGGGAAAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22622</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>187727</contig_pos>
        <strand>+</strand>
        <context>TTTGTCCCTT[C/T]TTCCTTTCCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTTTGCATGCGAAAATATATTGAATGCCCGTTTCTCTTTTTTGTCCCTT</left_flank>
        <right_flank>TTCCTTTCCCTATATACCGCCCCCTTTTTTCCATACATAATATTTTTATA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTAAAACTTTCATTTAAAAATTGAGCAGAAACAAAGCTTAATTTGTGTAGTTAAAAACTTTTTTGTAGCTACCGTAGTTTTTGAGATATGCGCCTTAAAAATGAGGCGCCCTTTGGCGCCGCCAAGCAAAAGAAGAGTGCACGATTTTTAAAGGCGCATGCCTCCAAAACTATGGAAGCTACAAAAAAGTGGTCAACTACAAAAATGAAGCTGTTTTTTTGCTTAGTATATTCTGAAAATTTCAGAGAATTCAGAAAATTTTAACCTAGTTTTGTAGGGCCCTAAAAAGTTTTCGAAAAATAATTGGTTACTGTAGCTTGAAGGAAATTTTTTAAAAGAATGGTCTCGACACAAAAGGGACCGGATACATCAGCTACTGTAGGTACTAGCAAACGATTTTCAATGAAAAGGCAATAATATGAAATATTATTACAAAAGTCGAATGTGTGTTTGCATGCGAAAATATATTGAATGCCCGTTTCTCTTTTTTGTCCCTTTTTCCTTTCCCTATATACCGCCCCCTTTTTTCCATACATAATATTTTTATATTCGGCAAAAATCGTCCCTCCCTGACTGACGTGGCACAGCAAGCACACACACCGTACCACTCGGTTTCTGTGTCTCTCTCCCTGCTGATGCTCTCCCTCTCCTCTAGCATCGCTCCTCTCGCTCTTCCCGATTCACTTCATGATACGAATGTTTTATAATACGTGGTATATATGTAGCAAAGAGCGAAACGGGAGAAGTAGGAGGAGGAGAAGAATAGCGAGAACAGAATGGGGAAAGTAGGTGGTTGCTCTTGGACACCTTACTTACTACTCATGCACTTTATTGACGAAGAAACACTTTGTAAGGAAGAGAAAAAGAGGATAAACGAGAATTTTAAAAGATTATTAGAAAAATGTAGAAAAAAAGCAACAAAGAGATAGGGAAACATAATAGTTAGGATAATAACAGGTTTAACAATGATGGAAATGAAGGTGGAATTACTATAGAAT</canonical>
            <polymorphic>TTTTAAAACTTTCATTTAAAAATTGAGCAGAAACAAAGCTTAATTTGTGTAGTTAAAAACTTTTTTGTAGCTACCGTAGTTTTTGAGATATGCGCCTTAAAAATGAGGCGCCCTTTGGCGCCGCCAAGCAAAAGAAGAGTGCACGATTTTTAAAGGCGCATGCCTCCAAAACTATGGAAGCTACAAAAAAGTGGTCAACTACAAAAATGAAGCTGTTTTTTTGCTTAGTATATTCTGAAAATTTCAGAGAATTCAGAAAATTTTAACCTAGTTTTGTAGGGCCCTAAAAAGTTTTCGAAAAATAATTGGTTACTGTAGCTTGAAGGAAATTTTTTAAAAGAATGGTCTCGACACAAAAGGGACCGGATACATCAGCTACTGTAGGTACTAGCAAACGATTTTCAATGAAAAGGCAATAATATGAAATATTATTACAAAAGTCGAATGTGTGTTTGCATGCGAAAATATATTGAATGCCCGTTTCTCTTTTTTGTCCCTTYTTCCTTTCCCTATATACCGCCCCCTTTTTTCCATACATAATATTTTTATATTCGGCAAAAATCGTCCCTCCCTGACTGACGTGGCACAGCAAGCACACACACCGTACCACTCGGTTTCTGTGTCTCTCTCCCTGCTGATGCTCTCCCTCTCCTCTAGCATCGCTCCTCTCGCTCTTCCCGATTCACTTCATGATACGAATGTTTTATAATACGTGGTATATATGTAGCAAAGAGCGAAACGGGAGAAGTAGGAGGAGGAGAAGAATAGCGAGAACAGAATGGGGAAAGTAGGTGGTTGCTCTTGGACACCTTACTTACTACTCATGCACTTTATTGACGAAGAAACACTTTGTAAGGAAGAGAAAAAGAGGATAAACGAGAATTTTAAAAGATTATTAGAAAAATGTAGAAAAAAAGCAACAAAGAGATAGGGAAACATAATAGTTAGGATAATAACAGGTTTAACAATGATGGAAATGAAGGTGGAATTACTATAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAGGTACTAGCAAACGATTTT</pcr_primer_p1>
		<pcr_primer_p2>AGAGACACAGAAACCGAGTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTAGGTACTAGCAAACGATTTTCAATGAAAAGGCAATAATATGAAATATTATTACAAAAGTCGAATGTGTGTTTGCATGCGAAAATATATTGAATGCCCGTTTCTCTTTTTTGTCCCTTTTTCCTTTCCCTATATACCGCCCCCTTTTTTCCATACATAATATTTTTATATTCGGCAAAAATCGTCCCTCCCTGACTGACGTGGCACAGCAAGCACACACACCGTACCACTCGGTTTCTGTGTCTCT</canonical_amplicon>
		<polymorphic_amplicon>TGTAGGTACTAGCAAACGATTTTCAATGAAAAGGCAATAATATGAAATATTATTACAAAAGTCGAATGTGTGTTTGCATGCGAAAATATATTGAATGCCCGTTTCTCTTTTTTGTCCCTTYTTCCTTTCCCTATATACCGCCCCCTTTTTTCCATACATAATATTTTTATATTCGGCAAAAATCGTCCCTCCCTGACTGACGTGGCACAGCAAGCACACACACCGTACCACTCGGTTTCTGTGTCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22623</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>187683</contig_pos>
        <strand>+</strand>
        <context>TGTGTGTTTG[C/T]ATGCGAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAAAGGCAATAATATGAAATATTATTACAAAAGTCGAATGTGTGTTTG</left_flank>
        <right_flank>ATGCGAAAATATATTGAATGCCCGTTTCTCTTTTTTGTCCCTTTTTCCTT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATTTTTGGCTACCTACAAAAGCAGGTTAAAGTTATTCGACATTTTTAAAACTTTCATTTAAAAATTGAGCAGAAACAAAGCTTAATTTGTGTAGTTAAAAACTTTTTTGTAGCTACCGTAGTTTTTGAGATATGCGCCTTAAAAATGAGGCGCCCTTTGGCGCCGCCAAGCAAAAGAAGAGTGCACGATTTTTAAAGGCGCATGCCTCCAAAACTATGGAAGCTACAAAAAAGTGGTCAACTACAAAAATGAAGCTGTTTTTTTGCTTAGTATATTCTGAAAATTTCAGAGAATTCAGAAAATTTTAACCTAGTTTTGTAGGGCCCTAAAAAGTTTTCGAAAAATAATTGGTTACTGTAGCTTGAAGGAAATTTTTTAAAAGAATGGTCTCGACACAAAAGGGACCGGATACATCAGCTACTGTAGGTACTAGCAAACGATTTTCAATGAAAAGGCAATAATATGAAATATTATTACAAAAGTCGAATGTGTGTTTGCATGCGAAAATATATTGAATGCCCGTTTCTCTTTTTTGTCCCTTTTTCCTTTCCCTATATACCGCCCCCTTTTTTCCATACATAATATTTTTATATTCGGCAAAAATCGTCCCTCCCTGACTGACGTGGCACAGCAAGCACACACACCGTACCACTCGGTTTCTGTGTCTCTCTCCCTGCTGATGCTCTCCCTCTCCTCTAGCATCGCTCCTCTCGCTCTTCCCGATTCACTTCATGATACGAATGTTTTATAATACGTGGTATATATGTAGCAAAGAGCGAAACGGGAGAAGTAGGAGGAGGAGAAGAATAGCGAGAACAGAATGGGGAAAGTAGGTGGTTGCTCTTGGACACCTTACTTACTACTCATGCACTTTATTGACGAAGAAACACTTTGTAAGGAAGAGAAAAAGAGGATAAACGAGAATTTTAAAAGATTATTAGAAAAATGTAGAAAAAAAGCAACAAAGAGATAGGGAAACATAATAGTTAGGATAATAA</canonical>
            <polymorphic>CAATTTTTGGCTACCTACAAAAGCAGGTTAAAGTTATTCGACATTTTTAAAACTTTCATTTAAAAATTGAGCAGAAACAAAGCTTAATTTGTGTAGTTAAAAACTTTTTTGTAGCTACCGTAGTTTTTGAGATATGCGCCTTAAAAATGAGGCGCCCTTTGGCGCCGCCAAGCAAAAGAAGAGTGCACGATTTTTAAAGGCGCATGCCTCCAAAACTATGGAAGCTACAAAAAAGTGGTCAACTACAAAAATGAAGCTGTTTTTTTGCTTAGTATATTCTGAAAATTTCAGAGAATTCAGAAAATTTTAACCTAGTTTTGTAGGGCCCTAAAAAGTTTTCGAAAAATAATTGGTTACTGTAGCTTGAAGGAAATTTTTTAAAAGAATGGTCTCGACACAAAAGGGACCGGATACATCAGCTACTGTAGGTACTAGCAAACGATTTTCAATGAAAAGGCAATAATATGAAATATTATTACAAAAGTCGAATGTGTGTTTGYATGCGAAAATATATTGAATGCCCGTTTCTCTTTTTTGTCCCTTTTTCCTTTCCCTATATACCGCCCCCTTTTTTCCATACATAATATTTTTATATTCGGCAAAAATCGTCCCTCCCTGACTGACGTGGCACAGCAAGCACACACACCGTACCACTCGGTTTCTGTGTCTCTCTCCCTGCTGATGCTCTCCCTCTCCTCTAGCATCGCTCCTCTCGCTCTTCCCGATTCACTTCATGATACGAATGTTTTATAATACGTGGTATATATGTAGCAAAGAGCGAAACGGGAGAAGTAGGAGGAGGAGAAGAATAGCGAGAACAGAATGGGGAAAGTAGGTGGTTGCTCTTGGACACCTTACTTACTACTCATGCACTTTATTGACGAAGAAACACTTTGTAAGGAAGAGAAAAAGAGGATAAACGAGAATTTTAAAAGATTATTAGAAAAATGTAGAAAAAAAGCAACAAAGAGATAGGGAAACATAATAGTTAGGATAATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCATGC</site>
                <isoschizomers>
                    <enzyme>BbuI</enzyme>
                    <enzyme>PaeI</enzyme>
                    <enzyme>SpaHI</enzyme>
                    <enzyme>SphI</enzyme>
                </isoschizomers>
                <canonical_bands>497 297 206</canonical_bands>
                <polymorphic_bands>794 206</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>365 297 204 134</canonical_bands>
                <polymorphic_bands>431 365 204</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>497 297 206</canonical_bands>
                <polymorphic_bands>794 206</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>297 233 203 134 133</canonical_bands>
                <polymorphic_bands>530 203 134 133</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>371 314 185 130</canonical_bands>
                <polymorphic_bands>685 185 130</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTAGGTACTAGCAAACGATTTT</pcr_primer_p1>
		<pcr_primer_p2>AGAGACACAGAAACCGAGTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTAGGTACTAGCAAACGATTTTCAATGAAAAGGCAATAATATGAAATATTATTACAAAAGTCGAATGTGTGTTTGCATGCGAAAATATATTGAATGCCCGTTTCTCTTTTTTGTCCCTTTTTCCTTTCCCTATATACCGCCCCCTTTTTTCCATACATAATATTTTTATATTCGGCAAAAATCGTCCCTCCCTGACTGACGTGGCACAGCAAGCACACACACCGTACCACTCGGTTTCTGTGTCTCT</canonical_amplicon>
		<polymorphic_amplicon>TGTAGGTACTAGCAAACGATTTTCAATGAAAAGGCAATAATATGAAATATTATTACAAAAGTCGAATGTGTGTTTGYATGCGAAAATATATTGAATGCCCGTTTCTCTTTTTTGTCCCTTTTTCCTTTCCCTATATACCGCCCCCTTTTTTCCATACATAATATTTTTATATTCGGCAAAAATCGTCCCTCCCTGACTGACGTGGCACAGCAAGCACACACACCGTACCACTCGGTTTCTGTGTCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22652</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>12444</contig_pos>
        <strand>+</strand>
        <context>AGCGAAAACA[A/G]AACAAATAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATAAAGAAATAAAAATAATTTTCAGAATTTCACAAGAAAGCGAAAACA</left_flank>
        <right_flank>AACAAATAAAAGACATTTTTTTACAAACAACATAAAAAGAAAATTTTAAT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAATAAAAAAACTTACATCAAATCTTCTCTCCTCATCTGATGAATCTGCCGATGAAGACCTCGAAGGAGAACGACGTCTTTTTCTGCATCGTTATAAAAATGTTTTTAAATATAGACCAAAACTTACTTGTCCTTTTTATGTCTTTTCTGTTCTTTTCCCTTGGCTTCAAATCTTCGCTCATCATCAGAATCTGTCGTTGAAGACCTCGAGCGCGAACGATGTCGTTTTCTGAAAGAATACCGTTTTCAAAAACTTGTTCTCAAATAATAATTAAAACTTACCGGTCTTTTTTATGTTTTTTGTGTTCTCTTCCCATAGCTGACACAGAATATTTTGTAGAAATAAGAAGGGGAAAATGTATTCGAAAATCGGCAAATAGGCCCGTTGTCGTCAGGTGTGCTGTTTTTGGTGCGCACACCGCGCCAGCAAATTGCGGAAATCGGAAAAAAATAAAGAAATAAAAATAATTTTCAGAATTTCACAAGAAAGCGAAAACAGAACAAATAAAAGACATTTTTTTACAAACAACATAAAAAGAAAATTTTAATTTAAAGAGTTCATCTATGATGAAAGATGCATTGGATTAAAAGCCATAGTTCGGGTAACAATTTACTTATTCTGTGGCTGAAACAAAATGAACAAGAAGCTCGAATATCTGAGAACCAGTATTCAATTGAAATTCCATTTCAAAAAACAATCGCAAACTTTCCCAGGCTCCGGTAGTAAATAAATTTCCAATATTTGTTTGACTATTGATGACACCGCTAATCGGAAAAGTGCACAATGTTAATCGCTATCAAACAACTAACAAAAATCAATCTAACTCTTCAGTTTCTTCTTTAGTTCTATCCCTAATAGCGACATTCTTCGACTATTTGTGTTATTCGGCACAAAAATCTCAAGTGGGTATCCCCATTTCACACCTCGACCTAAAATTGCTACACTAAAATTGTTACAGTTGAACGAAGATGTTTTTACTACTACAGATTCTATATATT</canonical>
            <polymorphic>ACAATAAAAAAACTTACATCAAATCTTCTCTCCTCATCTGATGAATCTGCCGATGAAGACCTCGAAGGAGAACGACGTCTTTTTCTGCATCGTTATAAAAATGTTTTTAAATATAGACCAAAACTTACTTGTCCTTTTTATGTCTTTTCTGTTCTTTTCCCTTGGCTTCAAATCTTCGCTCATCATCAGAATCTGTCGTTGAAGACCTCGAGCGCGAACGATGTCGTTTTCTGAAAGAATACCGTTTTCAAAAACTTGTTCTCAAATAATAATTAAAACTTACCGGTCTTTTTTATGTTTTTTGTGTTCTCTTCCCATAGCTGACACAGAATATTTTGTAGAAATAAGAAGGGGAAAATGTATTCGAAAATCGGCAAATAGGCCCGTTGTCGTCAGGTGTGCTGTTTTTGGTGCGCACACCGCGCCAGCAAATTGCGGAAATCGGAAAAAAATAAAGAAATAAAAATAATTTTCAGAATTTCACAAGAAAGCGAAAACARAACAAATAAAAGACATTTTTTTACAAACAACATAAAAAGAAAATTTTAATTTAAAGAGTTCATCTATGATGAAAGATGCATTGGATTAAAAGCCATAGTTCGGGTAACAATTTACTTATTCTGTGGCTGAAACAAAATGAACAAGAAGCTCGAATATCTGAGAACCAGTATTCAATTGAAATTCCATTTCAAAAAACAATCGCAAACTTTCCCAGGCTCCGGTAGTAAATAAATTTCCAATATTTGTTTGACTATTGATGACACCGCTAATCGGAAAAGTGCACAATGTTAATCGCTATCAAACAACTAACAAAAATCAATCTAACTCTTCAGTTTCTTCTTTAGTTCTATCCCTAATAGCGACATTCTTCGACTATTTGTGTTATTCGGCACAAAAATCTCAAGTGGGTATCCCCATTTCACACCTCGACCTAAAATTGCTACACTAAAATTGTTACAGTTGAACGAAGATGTTTTTACTACTACAGATTCTATATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAAATAAGAAGGGGAAAATGT</pcr_primer_p1>
		<pcr_primer_p2>TAATCCAATGCATCTTTCATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGAAATAAGAAGGGGAAAATGTATTCGAAAATCGGCAAATAGGCCCGTTGTCGTCAGGTGTGCTGTTTTTGGTGCGCACACCGCGCCAGCAAATTGCGGAAATCGGAAAAAAATAAAGAAATAAAAATAATTTTCAGAATTTCACAAGAAAGCGAAAACAGAACAAATAAAAGACATTTTTTTACAAACAACATAAAAAGAAAATTTTAATTTAAAGAGTTCATCTATGATGAAAGATGCATTGGATTA</canonical_amplicon>
		<polymorphic_amplicon>TAGAAATAAGAAGGGGAAAATGTATTCGAAAATCGGCAAATAGGCCCGTTGTCGTCAGGTGTGCTGTTTTTGGTGCGCACACCGCGCCAGCAAATTGCGGAAATCGGAAAAAAATAAAGAAATAAAAATAATTTTCAGAATTTCACAAGAAAGCGAAAACARAACAAATAAAAGACATTTTTTTACAAACAACATAAAAAGAAAATTTTAATTTAAAGAGTTCATCTATGATGAAAGATGCATTGGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22654</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>14374</contig_pos>
        <strand></strand>
        <context>ATTGTTTTRA[T/A]TTTTCAGGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGCGCCACCAGGTTTTCGAAGTTTTTTTTTCAAATTCTGAATTGTTTTAA</left_flank>
        <right_flank>TTTTCAGGCATTATGCAGTTTTCATGCTCTCTTTCAATGACCTGGTTCCC</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATCCAAAAAAATTCTCTCGAAATTCGAAAACAGAGAAAATAAATCCGGAAATTTTAAATATTTTTTGGTTACTGTAGTTTTCGTTGTGGGACCTTCGCCGACATCTCCGGGTTTTTTGTACCAGCATAATTCAGATACGATCCAATGGAGCGTCCAGTTTCTGATCATATGAAACCTGTAAACGTAAAACTCCGTTTGATTCTTCAGCAACTAGTAGACGTTGATGAGAAAAATCAAGTGATAACTCTGGTAGTGTGGACACAGTATACGTGGAACGACTACAAAATGAAATGGTCTCCAGAAGAGTACGGTAACATCACAAGTCTTCAGATTCCGTTTGGAACACTTTGGAAACCAGATATTCTGTTGTTTAATAGTGCAAATGAACATTTTGATTCAAGTTTTCCGGTGAATATGGTAGTTTCCAATGATGGGAATGTCCTGTTTGCGCCACCAGGTTTTCGAAGTTTTTTTTTCAAATTCTGAATTGTTTTAATTTTTCAGGCATTATGCAGTTTTCATGCTCTCTTTCAATGACCTGGTTCCCATATGATGAACAAGTTTGTTATCTGAAAGTAGGTGTTAAAAAAAGTATAACTGTATTTCCTTTAATAGAAGAAACCTCAAACTTTGAGCTCAATTATATCGATTCCTGAGAAAGATATCAAAACTTTGTCAACTGATAAAATGTTTTTGATATTATGATAAGCAATTTGTTAGCTGATCACTCTTTTATATCTTTCAAAGGAACCGAGATATACAAGCTCAAAGTTAAGTTGGCTTCTATTAAAGAAAAAATTTTTCACAAAATGATCGGAGCCCTGGAAGAGAGTTGCCGGCGACCGAAGTCCCACAGCGACAACTACAGTAACCTAAAAATTTTTATTTTTAATTTCAGAGTTATTTTCTTGTTTTTCACTGCCTTTTGTCAATTGTTCTGTGTTTTTTCCACTAAAAAGAAACATTTGAAAATTTTTTGGTCGAAAAATTTAGCGAT</canonical>
            <polymorphic>AAAATCCAAAAAAATTCTCTCGAAATTCGAAAACAGAGAAAATAAATCCGGAAATTTTAAATATTTTTTGGTTACTGTAGTTTTCGTTGTGGGACCTTCGCCGACATCTCCGGGTTTTTTGTACCAGCATAATTCAGATACGATCCAATGGAGCGTCCAGTTTCTGATCATATGAAACCTGTAAACGTAAAACTCCGTTTGATTCTTCAGCAACTAGTAGACGTTGATGAGAAAAATCAAGTGATAACTCTGGTAGTGTGGACACAGTATACGTGGAACGACTACAAAATGAAATGGTCTCCAGAAGAGTACGGTAACATCACAAGTCTTCAGATTCCGTTTGGAACACTTTGGAAACCAGATATTCTGTTGTTTAATAGTGCAAATGAACATTTTGATTCAAGTTTTCCGGTGAATATGGTAGTTTCCAATGATGGGAATGTCCTGTTTGCGCCACCAGGTTTTCGAAGTTTTTTTTTCAAATTCTGAATTGTTTTAAWTTTTCAGGCATTATGCAGTTTTCATGCTCTCTTTCAATGACCTGGTTCCCATATGATGAACAAGTTTGTTATCTGAAAGTAGGTGTTAAAAAAAGTATAACTGTATTTCCTTTAATAGAAGAAACCTCAAACTTTGAGCTCAATTATATCGATTCCTGAGAAAGATATCAAAACTTTGTCAACTGATAAAATGTTTTTGATATTATGATAAGCAATTTGTTAGCTGATCACTCTTTTATATCTTTCAAAGGAACCGAGATATACAAGCTCAAAGTTAAGTTGGCTTCTATTAAAGAAAAAATTTTTCACAAAATGATCGGAGCCCTGGAAGAGAGTTGCCGGCGACCGAAGTCCCACAGCGACAACTACAGTAACCTAAAAATTTTTATTTTTAATTTCAGAGTTATTTTCTTGTTTTTCACTGCCTTTTGTCAATTGTTCTGTGTTTTTTCCACTAAAAAGAAACATTTGAAAATTTTTTGGTCGAAAAATTTAGCGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>351 144 86 81 78 72 40 40 29 16 13 12 11 11 9 7</canonical_bands>
                <polymorphic_bands>351 153 86 81 78 72 40 40 29 16 13 12 11 11 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTACGGTAACATCACAAGTCTTC</pcr_primer_p1>
		<pcr_primer_p2>GTTCATCATATGGGAACCAG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GTACGGTAACATCACAAGTCTTCAGATTCCGTTTGGAACACTTTGGAAACCAGATATTCTGTTGTTTAATAGTGCAAATGAACATTTTGATTCAAGTTTTCCGGTGAATATGGTAGTTTCCAATGATGGGAATGTCCTGTTTGCGCCACCAGGTTTTCGAAGTTTTTTTTTCAAATTCTGAATTGTTTTAATTTTTCAGGCATTATGCAGTTTTCATGCTCTCTTTCAATGACCTGGTTCCCATATGATGAAC</canonical_amplicon>
		<polymorphic_amplicon>GTACGGTAACATCACAAGTCTTCAGATTCCGTTTGGAACACTTTGGAAACCAGATATTCTGTTGTTTAATAGTGCAAATGAACATTTTGATTCAAGTTTTCCGGTGAATATGGTAGTTTCCAATGATGGGAATGTCCTGTTTGCGCCACCAGGTTTTCGAAGTTTTTTTTTCAAATTCTGAATTGTTTTAAWTTTTCAGGCATTATGCAGTTTTCATGCTCTCTTTCAATGACCTGGTTCCCATATGATGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22655</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>14372</contig_pos>
        <strand></strand>
        <context>GAATTGTTTT[A/G]AWTTTTCAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGCGCCACCAGGTTTTCGAAGTTTTTTTTTCAAATTCTGAATTGTTTT</left_flank>
        <right_flank>ATTTTTCAGGCATTATGCAGTTTTCATGCTCTCTTTCAATGACCTGGTTC</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAAAATCCAAAAAAATTCTCTCGAAATTCGAAAACAGAGAAAATAAATCCGGAAATTTTAAATATTTTTTGGTTACTGTAGTTTTCGTTGTGGGACCTTCGCCGACATCTCCGGGTTTTTTGTACCAGCATAATTCAGATACGATCCAATGGAGCGTCCAGTTTCTGATCATATGAAACCTGTAAACGTAAAACTCCGTTTGATTCTTCAGCAACTAGTAGACGTTGATGAGAAAAATCAAGTGATAACTCTGGTAGTGTGGACACAGTATACGTGGAACGACTACAAAATGAAATGGTCTCCAGAAGAGTACGGTAACATCACAAGTCTTCAGATTCCGTTTGGAACACTTTGGAAACCAGATATTCTGTTGTTTAATAGTGCAAATGAACATTTTGATTCAAGTTTTCCGGTGAATATGGTAGTTTCCAATGATGGGAATGTCCTGTTTGCGCCACCAGGTTTTCGAAGTTTTTTTTTCAAATTCTGAATTGTTTTAATTTTTCAGGCATTATGCAGTTTTCATGCTCTCTTTCAATGACCTGGTTCCCATATGATGAACAAGTTTGTTATCTGAAAGTAGGTGTTAAAAAAAGTATAACTGTATTTCCTTTAATAGAAGAAACCTCAAACTTTGAGCTCAATTATATCGATTCCTGAGAAAGATATCAAAACTTTGTCAACTGATAAAATGTTTTTGATATTATGATAAGCAATTTGTTAGCTGATCACTCTTTTATATCTTTCAAAGGAACCGAGATATACAAGCTCAAAGTTAAGTTGGCTTCTATTAAAGAAAAAATTTTTCACAAAATGATCGGAGCCCTGGAAGAGAGTTGCCGGCGACCGAAGTCCCACAGCGACAACTACAGTAACCTAAAAATTTTTATTTTTAATTTCAGAGTTATTTTCTTGTTTTTCACTGCCTTTTGTCAATTGTTCTGTGTTTTTTCCACTAAAAAGAAACATTTGAAAATTTTTTGGTCGAAAAATTTAGCG</canonical>
            <polymorphic>CGAAAATCCAAAAAAATTCTCTCGAAATTCGAAAACAGAGAAAATAAATCCGGAAATTTTAAATATTTTTTGGTTACTGTAGTTTTCGTTGTGGGACCTTCGCCGACATCTCCGGGTTTTTTGTACCAGCATAATTCAGATACGATCCAATGGAGCGTCCAGTTTCTGATCATATGAAACCTGTAAACGTAAAACTCCGTTTGATTCTTCAGCAACTAGTAGACGTTGATGAGAAAAATCAAGTGATAACTCTGGTAGTGTGGACACAGTATACGTGGAACGACTACAAAATGAAATGGTCTCCAGAAGAGTACGGTAACATCACAAGTCTTCAGATTCCGTTTGGAACACTTTGGAAACCAGATATTCTGTTGTTTAATAGTGCAAATGAACATTTTGATTCAAGTTTTCCGGTGAATATGGTAGTTTCCAATGATGGGAATGTCCTGTTTGCGCCACCAGGTTTTCGAAGTTTTTTTTTCAAATTCTGAATTGTTTTRATTTTTCAGGCATTATGCAGTTTTCATGCTCTCTTTCAATGACCTGGTTCCCATATGATGAACAAGTTTGTTATCTGAAAGTAGGTGTTAAAAAAAGTATAACTGTATTTCCTTTAATAGAAGAAACCTCAAACTTTGAGCTCAATTATATCGATTCCTGAGAAAGATATCAAAACTTTGTCAACTGATAAAATGTTTTTGATATTATGATAAGCAATTTGTTAGCTGATCACTCTTTTATATCTTTCAAAGGAACCGAGATATACAAGCTCAAAGTTAAGTTGGCTTCTATTAAAGAAAAAATTTTTCACAAAATGATCGGAGCCCTGGAAGAGAGTTGCCGGCGACCGAAGTCCCACAGCGACAACTACAGTAACCTAAAAATTTTTATTTTTAATTTCAGAGTTATTTTCTTGTTTTTCACTGCCTTTTGTCAATTGTTCTGTGTTTTTTCCACTAAAAAGAAACATTTGAAAATTTTTTGGTCGAAAAATTTAGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>317 163 122 106 102 90 59 26 15</canonical_bands>
                <polymorphic_bands>317 212 163 106 102 59 26 15</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>351 144 86 81 78 72 40 40 29 16 14 13 11 9 9 7</canonical_bands>
                <polymorphic_bands>351 153 86 81 78 72 40 40 29 16 14 13 11 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTACGGTAACATCACAAGTCTTC</pcr_primer_p1>
		<pcr_primer_p2>GTTCATCATATGGGAACCAG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GTACGGTAACATCACAAGTCTTCAGATTCCGTTTGGAACACTTTGGAAACCAGATATTCTGTTGTTTAATAGTGCAAATGAACATTTTGATTCAAGTTTTCCGGTGAATATGGTAGTTTCCAATGATGGGAATGTCCTGTTTGCGCCACCAGGTTTTCGAAGTTTTTTTTTCAAATTCTGAATTGTTTTAATTTTTCAGGCATTATGCAGTTTTCATGCTCTCTTTCAATGACCTGGTTCCCATATGATGAAC</canonical_amplicon>
		<polymorphic_amplicon>GTACGGTAACATCACAAGTCTTCAGATTCCGTTTGGAACACTTTGGAAACCAGATATTCTGTTGTTTAATAGTGCAAATGAACATTTTGATTCAAGTTTTCCGGTGAATATGGTAGTTTCCAATGATGGGAATGTCCTGTTTGCGCCACCAGGTTTTCGAAGTTTTTTTTTCAAATTCTGAATTGTTTTRATTTTTCAGGCATTATGCAGTTTTCATGCTCTCTTTCAATGACCTGGTTCCCATATGATGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22656</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>14303</contig_pos>
        <strand>+</strand>
        <context>TGGTARTTTC[A/C]AATGATGGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTGCAAATGAACATTTTGATTCAAGTTTTCCGGTGAATATGGTAGTTTC</left_flank>
        <right_flank>AATGATGGGAATGTCCTGTTTGCGCCACCAGGTTTTCGAAGTTTTTTTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGCTGAAAACTCTAAAAAGGTCAACAAATTTTGCAAAAAAAATCTGAGAAAAAATCAATTTTCTTCTCGAAAATCCAAAAAAATTCTCTCGAAATTCGAAAACAGAGAAAATAAATCCGGAAATTTTAAATATTTTTTGGTTACTGTAGTTTTCGTTGTGGGACCTTCGCCGACATCTCCGGGTTTTTTGTACCAGCATAATTCAGATACGATCCAATGGAGCGTCCAGTTTCTGATCATATGAAACCTGTAAACGTAAAACTCCGTTTGATTCTTCAGCAACTAGTAGACGTTGATGAGAAAAATCAAGTGATAACTCTGGTAGTGTGGACACAGTATACGTGGAACGACTACAAAATGAAATGGTCTCCAGAAGAGTACGGTAACATCACAAGTCTTCAGATTCCGTTTGGAACACTTTGGAAACCAGATATTCTGTTGTTTAATAGTGCAAATGAACATTTTGATTCAAGTTTTCCGGTGAATATGGTAGTTTCCAATGATGGGAATGTCCTGTTTGCGCCACCAGGTTTTCGAAGTTTTTTTTTCAAATTCTGAATTGTTTTAATTTTTCAGGCATTATGCAGTTTTCATGCTCTCTTTCAATGACCTGGTTCCCATATGATGAACAAGTTTGTTATCTGAAAGTAGGTGTTAAAAAAAGTATAACTGTATTTCCTTTAATAGAAGAAACCTCAAACTTTGAGCTCAATTATATCGATTCCTGAGAAAGATATCAAAACTTTGTCAACTGATAAAATGTTTTTGATATTATGATAAGCAATTTGTTAGCTGATCACTCTTTTATATCTTTCAAAGGAACCGAGATATACAAGCTCAAAGTTAAGTTGGCTTCTATTAAAGAAAAAATTTTTCACAAAATGATCGGAGCCCTGGAAGAGAGTTGCCGGCGACCGAAGTCCCACAGCGACAACTACAGTAACCTAAAAATTTTTATTTTTAATTTCAGAGTTATTTTCTTGTTTTTCACTGCCTTT</canonical>
            <polymorphic>ATAGCTGAAAACTCTAAAAAGGTCAACAAATTTTGCAAAAAAAATCTGAGAAAAAATCAATTTTCTTCTCGAAAATCCAAAAAAATTCTCTCGAAATTCGAAAACAGAGAAAATAAATCCGGAAATTTTAAATATTTTTTGGTTACTGTAGTTTTCGTTGTGGGACCTTCGCCGACATCTCCGGGTTTTTTGTACCAGCATAATTCAGATACGATCCAATGGAGCGTCCAGTTTCTGATCATATGAAACCTGTAAACGTAAAACTCCGTTTGATTCTTCAGCAACTAGTAGACGTTGATGAGAAAAATCAAGTGATAACTCTGGTAGTGTGGACACAGTATACGTGGAACGACTACAAAATGAAATGGTCTCCAGAAGAGTACGGTAACATCACAAGTCTTCAGATTCCGTTTGGAACACTTTGGAAACCAGATATTCTGTTGTTTAATAGTGCAAATGAACATTTTGATTCAAGTTTTCCGGTGAATATGGTAGTTTCMAATGATGGGAATGTCCTGTTTGCGCCACCAGGTTTTCGAAGTTTTTTTTTCAAATTCTGAATTGTTTTAATTTTTCAGGCATTATGCAGTTTTCATGCTCTCTTTCAATGACCTGGTTCCCATATGATGAACAAGTTTGTTATCTGAAAGTAGGTGTTAAAAAAAGTATAACTGTATTTCCTTTAATAGAAGAAACCTCAAACTTTGAGCTCAATTATATCGATTCCTGAGAAAGATATCAAAACTTTGTCAACTGATAAAATGTTTTTGATATTATGATAAGCAATTTGTTAGCTGATCACTCTTTTATATCTTTCAAAGGAACCGAGATATACAAGCTCAAAGTTAAGTTGGCTTCTATTAAAGAAAAAATTTTTCACAAAATGATCGGAGCCCTGGAAGAGAGTTGCCGGCGACCGAAGTCCCACAGCGACAACTACAGTAACCTAAAAATTTTTATTTTTAATTTCAGAGTTATTTTCTTGTTTTTCACTGCCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTACAAAATGAAATGGTCTCC</pcr_primer_p1>
		<pcr_primer_p2>GAGAGCATGAAAACTGCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACTACAAAATGAAATGGTCTCCAGAAGAGTACGGTAACATCACAAGTCTTCAGATTCCGTTTGGAACACTTTGGAAACCAGATATTCTGTTGTTTAATAGTGCAAATGAACATTTTGATTCAAGTTTTCCGGTGAATATGGTAGTTTCCAATGATGGGAATGTCCTGTTTGCGCCACCAGGTTTTCGAAGTTTTTTTTTCAAATTCTGAATTGTTTTAATTTTTCAGGCATTATGCAGTTTTCATGCTCTC</canonical_amplicon>
		<polymorphic_amplicon>ACTACAAAATGAAATGGTCTCCAGAAGAGTACGGTAACATCACAAGTCTTCAGATTCCGTTTGGAACACTTTGGAAACCAGATATTCTGTTGTTTAATAGTGCAAATGAACATTTTGATTCAAGTTTTCCGGTGAATATGGTAGTTTCMAATGATGGGAATGTCCTGTTTGCGCCACCAGGTTTTCGAAGTTTTTTTTTCAAATTCTGAATTGTTTTAATTTTTCAGGCATTATGCAGTTTTCATGCTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22657</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>14298</contig_pos>
        <strand>+</strand>
        <context>GAATATGGTA[A/G]TTTCMAATGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAATAGTGCAAATGAACATTTTGATTCAAGTTTTCCGGTGAATATGGTA</left_flank>
        <right_flank>TTTCCAATGATGGGAATGTCCTGTTTGCGCCACCAGGTTTTCGAAGTTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAAATAGCTGAAAACTCTAAAAAGGTCAACAAATTTTGCAAAAAAAATCTGAGAAAAAATCAATTTTCTTCTCGAAAATCCAAAAAAATTCTCTCGAAATTCGAAAACAGAGAAAATAAATCCGGAAATTTTAAATATTTTTTGGTTACTGTAGTTTTCGTTGTGGGACCTTCGCCGACATCTCCGGGTTTTTTGTACCAGCATAATTCAGATACGATCCAATGGAGCGTCCAGTTTCTGATCATATGAAACCTGTAAACGTAAAACTCCGTTTGATTCTTCAGCAACTAGTAGACGTTGATGAGAAAAATCAAGTGATAACTCTGGTAGTGTGGACACAGTATACGTGGAACGACTACAAAATGAAATGGTCTCCAGAAGAGTACGGTAACATCACAAGTCTTCAGATTCCGTTTGGAACACTTTGGAAACCAGATATTCTGTTGTTTAATAGTGCAAATGAACATTTTGATTCAAGTTTTCCGGTGAATATGGTAGTTTCCAATGATGGGAATGTCCTGTTTGCGCCACCAGGTTTTCGAAGTTTTTTTTTCAAATTCTGAATTGTTTTAATTTTTCAGGCATTATGCAGTTTTCATGCTCTCTTTCAATGACCTGGTTCCCATATGATGAACAAGTTTGTTATCTGAAAGTAGGTGTTAAAAAAAGTATAACTGTATTTCCTTTAATAGAAGAAACCTCAAACTTTGAGCTCAATTATATCGATTCCTGAGAAAGATATCAAAACTTTGTCAACTGATAAAATGTTTTTGATATTATGATAAGCAATTTGTTAGCTGATCACTCTTTTATATCTTTCAAAGGAACCGAGATATACAAGCTCAAAGTTAAGTTGGCTTCTATTAAAGAAAAAATTTTTCACAAAATGATCGGAGCCCTGGAAGAGAGTTGCCGGCGACCGAAGTCCCACAGCGACAACTACAGTAACCTAAAAATTTTTATTTTTAATTTCAGAGTTATTTTCTTGTTTTTCACTG</canonical>
            <polymorphic>TAAAAATAGCTGAAAACTCTAAAAAGGTCAACAAATTTTGCAAAAAAAATCTGAGAAAAAATCAATTTTCTTCTCGAAAATCCAAAAAAATTCTCTCGAAATTCGAAAACAGAGAAAATAAATCCGGAAATTTTAAATATTTTTTGGTTACTGTAGTTTTCGTTGTGGGACCTTCGCCGACATCTCCGGGTTTTTTGTACCAGCATAATTCAGATACGATCCAATGGAGCGTCCAGTTTCTGATCATATGAAACCTGTAAACGTAAAACTCCGTTTGATTCTTCAGCAACTAGTAGACGTTGATGAGAAAAATCAAGTGATAACTCTGGTAGTGTGGACACAGTATACGTGGAACGACTACAAAATGAAATGGTCTCCAGAAGAGTACGGTAACATCACAAGTCTTCAGATTCCGTTTGGAACACTTTGGAAACCAGATATTCTGTTGTTTAATAGTGCAAATGAACATTTTGATTCAAGTTTTCCGGTGAATATGGTARTTTCCAATGATGGGAATGTCCTGTTTGCGCCACCAGGTTTTCGAAGTTTTTTTTTCAAATTCTGAATTGTTTTAATTTTTCAGGCATTATGCAGTTTTCATGCTCTCTTTCAATGACCTGGTTCCCATATGATGAACAAGTTTGTTATCTGAAAGTAGGTGTTAAAAAAAGTATAACTGTATTTCCTTTAATAGAAGAAACCTCAAACTTTGAGCTCAATTATATCGATTCCTGAGAAAGATATCAAAACTTTGTCAACTGATAAAATGTTTTTGATATTATGATAAGCAATTTGTTAGCTGATCACTCTTTTATATCTTTCAAAGGAACCGAGATATACAAGCTCAAAGTTAAGTTGGCTTCTATTAAAGAAAAAATTTTTCACAAAATGATCGGAGCCCTGGAAGAGAGTTGCCGGCGACCGAAGTCCCACAGCGACAACTACAGTAACCTAAAAATTTTTATTTTTAATTTCAGAGTTATTTTCTTGTTTTTCACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTACAAAATGAAATGGTCTCC</pcr_primer_p1>
		<pcr_primer_p2>GAGAGCATGAAAACTGCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACTACAAAATGAAATGGTCTCCAGAAGAGTACGGTAACATCACAAGTCTTCAGATTCCGTTTGGAACACTTTGGAAACCAGATATTCTGTTGTTTAATAGTGCAAATGAACATTTTGATTCAAGTTTTCCGGTGAATATGGTAGTTTCCAATGATGGGAATGTCCTGTTTGCGCCACCAGGTTTTCGAAGTTTTTTTTTCAAATTCTGAATTGTTTTAATTTTTCAGGCATTATGCAGTTTTCATGCTCTC</canonical_amplicon>
		<polymorphic_amplicon>ACTACAAAATGAAATGGTCTCCAGAAGAGTACGGTAACATCACAAGTCTTCAGATTCCGTTTGGAACACTTTGGAAACCAGATATTCTGTTGTTTAATAGTGCAAATGAACATTTTGATTCAAGTTTTCCGGTGAATATGGTARTTTCCAATGATGGGAATGTCCTGTTTGCGCCACCAGGTTTTCGAAGTTTTTTTTTCAAATTCTGAATTGTTTTAATTTTTCAGGCATTATGCAGTTTTCATGCTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22658</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>42840</contig_pos>
        <strand>+</strand>
        <context>TACTATGGTT[G/T]CATTCTTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTCTCTTTTAGCTGTAACACTCCTGATTGCTGCTTCATGTACTATGGTT</left_flank>
        <right_flank>CATTCTTCCACTCGGACCCAGAGAACTGGATCAAGGCAGAGTTCTTCCAT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGTCTCTGCATTGTGGGGCCCTTATATTACAGGTTTTAAAAAATCAATCAAAAACAATTAAGTTTTTTCAGCTGCTCATCTATCGGAACTATCCTGTACTATGCCCAAGAATTGTGCACAATATCATTTTGCATACGCAGTTGTTGGAGAGCTTCCCGCTTTCGTTATCGCCTGGATCAGTTTGGTGGATTATGTCGCACAGGCGGGACTATTTTGTAAAGCATGGGCAGATCATTTTGTGAGATTCTCATCAATTCGAAATAGATCCAGTCATTCTTTTCCAGAATCTTCTCTTCCGTGGCCTTCCTGCCAAATCGTTGACTTTTGACGTCTTCTCTCCGGATTCCTCAATTCTCTCCCCACAAGTTGATCTTCTTACCGTACTCTCCGCCATCATAACTCTCTGTCTGCTTCTTTGTTCTCTTCGAGTCGTCGGAACGATTTGCGTCTCTCTTTTAGCTGTAACACTCCTGATTGCTGCTTCATGTACTATGGTTTCATTCTTCCACTCGGACCCAGAGAACTGGATCAAGGCAGAGTTCTTCCATTATGGATATAAAGGGGTTTGTTCTTCCATTACGGATATGAGACTAGCAACTGATTTCAAAAAAGTTTTAGGTGCTCTACTCGATTTGTGCTCTTTGTGCGTGTTATACTGGAATCGAAAGTACATCTTGTCTTTTGGAAGAAACGAAGAATCCAAGAAAGCGAATTTCTGGAGTTTTATCCTTTTTAGTTTTGGTTCTCACAACTATTTTCTTCATTTTGGCAATTACATTTAGGTGAATCTTCTTGATTTTGAGAAAGAATTTTTTGTAATTTTTGACATTAAAATGTTCCCGAAGATACCCTAGAACCTGTAATAGAAAGACCCTCTTTCAACTTTGAGCCAATTTATCTCATTTTCTGTGAATGATATCAAAAAGTTGTAAACTGATAAATTGTTTATCATAATATCAGATAAATTTCATCAGTTGGTATATTTTTGATATCTCTCA</canonical>
            <polymorphic>GAAGTCTCTGCATTGTGGGGCCCTTATATTACAGGTTTTAAAAAATCAATCAAAAACAATTAAGTTTTTTCAGCTGCTCATCTATCGGAACTATCCTGTACTATGCCCAAGAATTGTGCACAATATCATTTTGCATACGCAGTTGTTGGAGAGCTTCCCGCTTTCGTTATCGCCTGGATCAGTTTGGTGGATTATGTCGCACAGGCGGGACTATTTTGTAAAGCATGGGCAGATCATTTTGTGAGATTCTCATCAATTCGAAATAGATCCAGTCATTCTTTTCCAGAATCTTCTCTTCCGTGGCCTTCCTGCCAAATCGTTGACTTTTGACGTCTTCTCTCCGGATTCCTCAATTCTCTCCCCACAAGTTGATCTTCTTACCGTACTCTCCGCCATCATAACTCTCTGTCTGCTTCTTTGTTCTCTTCGAGTCGTCGGAACGATTTGCGTCTCTCTTTTAGCTGTAACACTCCTGATTGCTGCTTCATGTACTATGGTTKCATTCTTCCACTCGGACCCAGAGAACTGGATCAAGGCAGAGTTCTTCCATTATGGATATAAAGGGGTTTGTTCTTCCATTACGGATATGAGACTAGCAACTGATTTCAAAAAAGTTTTAGGTGCTCTACTCGATTTGTGCTCTTTGTGCGTGTTATACTGGAATCGAAAGTACATCTTGTCTTTTGGAAGAAACGAAGAATCCAAGAAAGCGAATTTCTGGAGTTTTATCCTTTTTAGTTTTGGTTCTCACAACTATTTTCTTCATTTTGGCAATTACATTTAGGTGAATCTTCTTGATTTTGAGAAAGAATTTTTTGTAATTTTTGACATTAAAATGTTCCCGAAGATACCCTAGAACCTGTAATAGAAAGACCCTCTTTCAACTTTGAGCCAATTTATCTCATTTTCTGTGAATGATATCAAAAAGTTGTAAACTGATAAATTGTTTATCATAATATCAGATAAATTTCATCAGTTGGTATATTTTTGATATCTCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGTTGATCTTCTTACCGTACT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAAATCAGTTGCTAGTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAAGTTGATCTTCTTACCGTACTCTCCGCCATCATAACTCTCTGTCTGCTTCTTTGTTCTCTTCGAGTCGTCGGAACGATTTGCGTCTCTCTTTTAGCTGTAACACTCCTGATTGCTGCTTCATGTACTATGGTTTCATTCTTCCACTCGGACCCAGAGAACTGGATCAAGGCAGAGTTCTTCCATTATGGATATAAAGGGGTTTGTTCTTCCATTACGGATATGAGACTAGCAACTGATTTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CAAGTTGATCTTCTTACCGTACTCTCCGCCATCATAACTCTCTGTCTGCTTCTTTGTTCTCTTCGAGTCGTCGGAACGATTTGCGTCTCTCTTTTAGCTGTAACACTCCTGATTGCTGCTTCATGTACTATGGTTKCATTCTTCCACTCGGACCCAGAGAACTGGATCAAGGCAGAGTTCTTCCATTATGGATATAAAGGGGTTTGTTCTTCCATTACGGATATGAGACTAGCAACTGATTTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22659</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>42927</contig_pos>
        <strand>+</strand>
        <context>CATTACGGAT[A/G]TGAGACTAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGAGTTCTTCCATTATGGATATAAAGGGGTTTGTTCTTCCATTACGGAT</left_flank>
        <right_flank>TGAGACTAGCAACTGATTTCAAAAAAGTTTTAGGTGCTCTACTCGATTTG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACTATCCTGTACTATGCCCAAGAATTGTGCACAATATCATTTTGCATACGCAGTTGTTGGAGAGCTTCCCGCTTTCGTTATCGCCTGGATCAGTTTGGTGGATTATGTCGCACAGGCGGGACTATTTTGTAAAGCATGGGCAGATCATTTTGTGAGATTCTCATCAATTCGAAATAGATCCAGTCATTCTTTTCCAGAATCTTCTCTTCCGTGGCCTTCCTGCCAAATCGTTGACTTTTGACGTCTTCTCTCCGGATTCCTCAATTCTCTCCCCACAAGTTGATCTTCTTACCGTACTCTCCGCCATCATAACTCTCTGTCTGCTTCTTTGTTCTCTTCGAGTCGTCGGAACGATTTGCGTCTCTCTTTTAGCTGTAACACTCCTGATTGCTGCTTCATGTACTATGGTTTCATTCTTCCACTCGGACCCAGAGAACTGGATCAAGGCAGAGTTCTTCCATTATGGATATAAAGGGGTTTGTTCTTCCATTACGGATATGAGACTAGCAACTGATTTCAAAAAAGTTTTAGGTGCTCTACTCGATTTGTGCTCTTTGTGCGTGTTATACTGGAATCGAAAGTACATCTTGTCTTTTGGAAGAAACGAAGAATCCAAGAAAGCGAATTTCTGGAGTTTTATCCTTTTTAGTTTTGGTTCTCACAACTATTTTCTTCATTTTGGCAATTACATTTAGGTGAATCTTCTTGATTTTGAGAAAGAATTTTTTGTAATTTTTGACATTAAAATGTTCCCGAAGATACCCTAGAACCTGTAATAGAAAGACCCTCTTTCAACTTTGAGCCAATTTATCTCATTTTCTGTGAATGATATCAAAAAGTTGTAAACTGATAAATTGTTTATCATAATATCAGATAAATTTCATCAGTTGGTATATTTTTGATATCTCTCATAGGAGCTGCGATAATCAAGCTCAAACTTGACAGTGTAGGGGACCCATCTATTACTGGTTTTACAGTATGTATTTGCATACATATAA</canonical>
            <polymorphic>GAACTATCCTGTACTATGCCCAAGAATTGTGCACAATATCATTTTGCATACGCAGTTGTTGGAGAGCTTCCCGCTTTCGTTATCGCCTGGATCAGTTTGGTGGATTATGTCGCACAGGCGGGACTATTTTGTAAAGCATGGGCAGATCATTTTGTGAGATTCTCATCAATTCGAAATAGATCCAGTCATTCTTTTCCAGAATCTTCTCTTCCGTGGCCTTCCTGCCAAATCGTTGACTTTTGACGTCTTCTCTCCGGATTCCTCAATTCTCTCCCCACAAGTTGATCTTCTTACCGTACTCTCCGCCATCATAACTCTCTGTCTGCTTCTTTGTTCTCTTCGAGTCGTCGGAACGATTTGCGTCTCTCTTTTAGCTGTAACACTCCTGATTGCTGCTTCATGTACTATGGTTTCATTCTTCCACTCGGACCCAGAGAACTGGATCAAGGCAGAGTTCTTCCATTATGGATATAAAGGGGTTTGTTCTTCCATTACGGATRTGAGACTAGCAACTGATTTCAAAAAAGTTTTAGGTGCTCTACTCGATTTGTGCTCTTTGTGCGTGTTATACTGGAATCGAAAGTACATCTTGTCTTTTGGAAGAAACGAAGAATCCAAGAAAGCGAATTTCTGGAGTTTTATCCTTTTTAGTTTTGGTTCTCACAACTATTTTCTTCATTTTGGCAATTACATTTAGGTGAATCTTCTTGATTTTGAGAAAGAATTTTTTGTAATTTTTGACATTAAAATGTTCCCGAAGATACCCTAGAACCTGTAATAGAAAGACCCTCTTTCAACTTTGAGCCAATTTATCTCATTTTCTGTGAATGATATCAAAAAGTTGTAAACTGATAAATTGTTTATCATAATATCAGATAAATTTCATCAGTTGGTATATTTTTGATATCTCTCATAGGAGCTGCGATAATCAAGCTCAAACTTGACAGTGTAGGGGACCCATCTATTACTGGTTTTACAGTATGTATTTGCATACATATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTCTCTCTTTTAGCTGTAACAC</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTCCAAAAGACAAGATGTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CGTCTCTCTTTTAGCTGTAACACTCCTGATTGCTGCTTCATGTACTATGGTTTCATTCTTCCACTCGGACCCAGAGAACTGGATCAAGGCAGAGTTCTTCCATTATGGATATAAAGGGGTTTGTTCTTCCATTACGGATATGAGACTAGCAACTGATTTCAAAAAAGTTTTAGGTGCTCTACTCGATTTGTGCTCTTTGTGCGTGTTATACTGGAATCGAAAGTACATCTTGTCTTTTGGAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>CGTCTCTCTTTTAGCTGTAACACTCCTGATTGCTGCTTCATGTACTATGGTTTCATTCTTCCACTCGGACCCAGAGAACTGGATCAAGGCAGAGTTCTTCCATTATGGATATAAAGGGGTTTGTTCTTCCATTACGGATRTGAGACTAGCAACTGATTTCAAAAAAGTTTTAGGTGCTCTACTCGATTTGTGCTCTTTGTGCGTGTTATACTGGAATCGAAAGTACATCTTGTCTTTTGGAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22660</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>45196</contig_pos>
        <strand>+</strand>
        <context>TATCTCCTCT[A/C]CAGAGCTTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTAATTTTCATGGCTCCAGCCAAACTAGTCATTACGGTACTATCTCCTCT</left_flank>
        <right_flank>CAGAGCTTAAAATCTTCCTTCATCCTAGATTCTCCTTGTCTACATCCAAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGGTCAAAACTGAATTGAATACGGACGGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGTCTGGTTCCATATGCCCGAGATACTTCTACTAAAAGTCCATACTTTGCTGTCCTCCTTTGCACTTTCCTTGTGGCTCTTTGCTCAATGATTCAGAAGACTCTGCTTCTCAATTTTGTAATTTTCATGGCTCCAGCCAAACTAGTCATTACGGTACTATCTCCTCTACAGAGCTTAAAATCTTCCTTCATCCTAGATTCTCCTTGTCTACATCCAACACTATTATCCTGAACAAATCGGCATTCCAGAAGAAACTTCCGGTTATAAATCAATCGGAAAGAAAAGAACACGAGTACATATCGATGATGGTGTCTCAGTTGATGATTCCATTTCTTTGATGCCACAAAGATCTAAAAGAGCAGACGATGATGAATCAGAAGTCAGTCATTCGACGTTTGATACAACGGCGTTTTTGTATATGAAAGCTACGAAAATGGAGACGGAGAGATTGCAGAGGAGATTGGAGAAGGTGAGAGGCTTACTGTAGCACAGTTGTAACCAGTTTGTGATTTTCGCTACGTTTGAACGAGATTTCAATATATTTCGATCGGTGTCGAAAATCAGACACTCCGATTTCATGTGAGGAATTGTATGGCCTAACTTTCTCGACATGGTTTTTCTAGAGAACCGTAGTTGATGGCCACCAATTTTCATATCCACATGGTGCG</canonical>
            <polymorphic>GCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGGTCAAAACTGAATTGAATACGGACGGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGTCTGGTTCCATATGCCCGAGATACTTCTACTAAAAGTCCATACTTTGCTGTCCTCCTTTGCACTTTCCTTGTGGCTCTTTGCTCAATGATTCAGAAGACTCTGCTTCTCAATTTTGTAATTTTCATGGCTCCAGCCAAACTAGTCATTACGGTACTATCTCCTCTMCAGAGCTTAAAATCTTCCTTCATCCTAGATTCTCCTTGTCTACATCCAACACTATTATCCTGAACAAATCGGCATTCCAGAAGAAACTTCCGGTTATAAATCAATCGGAAAGAAAAGAACACGAGTACATATCGATGATGGTGTCTCAGTTGATGATTCCATTTCTTTGATGCCACAAAGATCTAAAAGAGCAGACGATGATGAATCAGAAGTCAGTCATTCGACGTTTGATACAACGGCGTTTTTGTATATGAAAGCTACGAAAATGGAGACGGAGAGATTGCAGAGGAGATTGGAGAAGGTGAGAGGCTTACTGTAGCACAGTTGTAACCAGTTTGTGATTTTCGCTACGTTTGAACGAGATTTCAATATATTTCGATCGGTGTCGAAAATCAGACACTCCGATTTCATGTGAGGAATTGTATGGCCTAACTTTCTCGACATGGTTTTTCTAGAGAACCGTAGTTGATGGCCACCAATTTTCATATCCACATGGTGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>498 316 186</canonical_bands>
                <polymorphic_bands>814 186</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTAAAAATTCCAGATCGT</pcr_primer_p1>
		<pcr_primer_p2>TTCAGGATAATAGTGTTGGATGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTAAAAATTCCAGATCGTCTGGTTCCATATGCCCGAGATACTTCTACTAAAAGTCCATACTTTGCTGTCCTCCTTTGCACTTTCCTTGTGGCTCTTTGCTCAATGATTCAGAAGACTCTGCTTCTCAATTTTGTAATTTTCATGGCTCCAGCCAAACTAGTCATTACGGTACTATCTCCTCTACAGAGCTTAAAATCTTCCTTCATCCTAGATTCTCCTTGTCTACATCCAACACTATTATCCTGAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTAAAAATTCCAGATCGTCTGGTTCCATATGCCCGAGATACTTCTACTAAAAGTCCATACTTTGCTGTCCTCCTTTGCACTTTCCTTGTGGCTCTTTGCTCAATGATTCAGAAGACTCTGCTTCTCAATTTTGTAATTTTCATGGCTCCAGCCAAACTAGTCATTACGGTACTATCTCCTCTMCAGAGCTTAAAATCTTCCTTCATCCTAGATTCTCCTTGTCTACATCCAACACTATTATCCTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22661</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>45131</contig_pos>
        <strand>+</strand>
        <context>TCAGAAGACT[C/T]TGCTTCTCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCTCCTTTGCACTTTCCTTGTGGCTCTTTGCTCAATGATTCAGAAGACT</left_flank>
        <right_flank>TGCTTCTCAATTTTGTAATTTTCATGGCTCCAGCCAAACTAGTCATTACG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGGCTAAAAACAGGTTGAAAGCTGGTTAAAAACAGGCTGAAAACGGCTTAAAAACGGGCTGAAAGCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGGTCAAAACTGAATTGAATACGGACGGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGTCTGGTTCCATATGCCCGAGATACTTCTACTAAAAGTCCATACTTTGCTGTCCTCCTTTGCACTTTCCTTGTGGCTCTTTGCTCAATGATTCAGAAGACTCTGCTTCTCAATTTTGTAATTTTCATGGCTCCAGCCAAACTAGTCATTACGGTACTATCTCCTCTACAGAGCTTAAAATCTTCCTTCATCCTAGATTCTCCTTGTCTACATCCAACACTATTATCCTGAACAAATCGGCATTCCAGAAGAAACTTCCGGTTATAAATCAATCGGAAAGAAAAGAACACGAGTACATATCGATGATGGTGTCTCAGTTGATGATTCCATTTCTTTGATGCCACAAAGATCTAAAAGAGCAGACGATGATGAATCAGAAGTCAGTCATTCGACGTTTGATACAACGGCGTTTTTGTATATGAAAGCTACGAAAATGGAGACGGAGAGATTGCAGAGGAGATTGGAGAAGGTGAGAGGCTTACTGTAGCACAGTTGTAACCAGTTTGTGATTTTCGCTACGTTTGAACGAGATTTCAATATATTTCGATCGGTGTCGAAAATCAGACACTCCGATTTCATGTGAGGAATTGTATGGCCTAACTT</canonical>
            <polymorphic>CTGGCTAAAAACAGGTTGAAAGCTGGTTAAAAACAGGCTGAAAACGGCTTAAAAACGGGCTGAAAGCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGGTCAAAACTGAATTGAATACGGACGGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGTCTGGTTCCATATGCCCGAGATACTTCTACTAAAAGTCCATACTTTGCTGTCCTCCTTTGCACTTTCCTTGTGGCTCTTTGCTCAATGATTCAGAAGACTYTGCTTCTCAATTTTGTAATTTTCATGGCTCCAGCCAAACTAGTCATTACGGTACTATCTCCTCTACAGAGCTTAAAATCTTCCTTCATCCTAGATTCTCCTTGTCTACATCCAACACTATTATCCTGAACAAATCGGCATTCCAGAAGAAACTTCCGGTTATAAATCAATCGGAAAGAAAAGAACACGAGTACATATCGATGATGGTGTCTCAGTTGATGATTCCATTTCTTTGATGCCACAAAGATCTAAAAGAGCAGACGATGATGAATCAGAAGTCAGTCATTCGACGTTTGATACAACGGCGTTTTTGTATATGAAAGCTACGAAAATGGAGACGGAGAGATTGCAGAGGAGATTGGAGAAGGTGAGAGGCTTACTGTAGCACAGTTGTAACCAGTTTGTGATTTTCGCTACGTTTGAACGAGATTTCAATATATTTCGATCGGTGTCGAAAATCAGACACTCCGATTTCATGTGAGGAATTGTATGGCCTAACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>487 232 127 97 48 9</canonical_bands>
                <polymorphic_bands>487 232 127 106 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTAAAAATTCCAGATCGT</pcr_primer_p1>
		<pcr_primer_p2>TTCAGGATAATAGTGTTGGATGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTAAAAATTCCAGATCGTCTGGTTCCATATGCCCGAGATACTTCTACTAAAAGTCCATACTTTGCTGTCCTCCTTTGCACTTTCCTTGTGGCTCTTTGCTCAATGATTCAGAAGACTCTGCTTCTCAATTTTGTAATTTTCATGGCTCCAGCCAAACTAGTCATTACGGTACTATCTCCTCTACAGAGCTTAAAATCTTCCTTCATCCTAGATTCTCCTTGTCTACATCCAACACTATTATCCTGAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTAAAAATTCCAGATCGTCTGGTTCCATATGCCCGAGATACTTCTACTAAAAGTCCATACTTTGCTGTCCTCCTTTGCACTTTCCTTGTGGCTCTTTGCTCAATGATTCAGAAGACTYTGCTTCTCAATTTTGTAATTTTCATGGCTCCAGCCAAACTAGTCATTACGGTACTATCTCCTCTACAGAGCTTAAAATCTTCCTTCATCCTAGATTCTCCTTGTCTACATCCAACACTATTATCCTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22662</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>45082</contig_pos>
        <strand>+</strand>
        <context>ACTTTGCTGT[A/C]CTCCTTTGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGGTTCCATATGCCCGAGATACTTCTACTAAAAGTCCATACTTTGCTGT</left_flank>
        <right_flank>CTCCTTTGCACTTTCCTTGTGGCTCTTTGCTCAATGATTCAGAAGACTCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAACAGGTTGAGAACTTGTCGAAAACGGACCAAAAACGGGCAGAAAACTGGCTAAAAACAGGTTGAAAGCTGGTTAAAAACAGGCTGAAAACGGCTTAAAAACGGGCTGAAAGCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGGTCAAAACTGAATTGAATACGGACGGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGTCTGGTTCCATATGCCCGAGATACTTCTACTAAAAGTCCATACTTTGCTGTCCTCCTTTGCACTTTCCTTGTGGCTCTTTGCTCAATGATTCAGAAGACTCTGCTTCTCAATTTTGTAATTTTCATGGCTCCAGCCAAACTAGTCATTACGGTACTATCTCCTCTACAGAGCTTAAAATCTTCCTTCATCCTAGATTCTCCTTGTCTACATCCAACACTATTATCCTGAACAAATCGGCATTCCAGAAGAAACTTCCGGTTATAAATCAATCGGAAAGAAAAGAACACGAGTACATATCGATGATGGTGTCTCAGTTGATGATTCCATTTCTTTGATGCCACAAAGATCTAAAAGAGCAGACGATGATGAATCAGAAGTCAGTCATTCGACGTTTGATACAACGGCGTTTTTGTATATGAAAGCTACGAAAATGGAGACGGAGAGATTGCAGAGGAGATTGGAGAAGGTGAGAGGCTTACTGTAGCACAGTTGTAACCAGTTTGTGATTTTCGCTACGTTTGAACGAGATTTCAATATATTTCGATCGGTGT</canonical>
            <polymorphic>AGAAACAGGTTGAGAACTTGTCGAAAACGGACCAAAAACGGGCAGAAAACTGGCTAAAAACAGGTTGAAAGCTGGTTAAAAACAGGCTGAAAACGGCTTAAAAACGGGCTGAAAGCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGGTCAAAACTGAATTGAATACGGACGGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGTCTGGTTCCATATGCCCGAGATACTTCTACTAAAAGTCCATACTTTGCTGTMCTCCTTTGCACTTTCCTTGTGGCTCTTTGCTCAATGATTCAGAAGACTCTGCTTCTCAATTTTGTAATTTTCATGGCTCCAGCCAAACTAGTCATTACGGTACTATCTCCTCTACAGAGCTTAAAATCTTCCTTCATCCTAGATTCTCCTTGTCTACATCCAACACTATTATCCTGAACAAATCGGCATTCCAGAAGAAACTTCCGGTTATAAATCAATCGGAAAGAAAAGAACACGAGTACATATCGATGATGGTGTCTCAGTTGATGATTCCATTTCTTTGATGCCACAAAGATCTAAAAGAGCAGACGATGATGAATCAGAAGTCAGTCATTCGACGTTTGATACAACGGCGTTTTTGTATATGAAAGCTACGAAAATGGAGACGGAGAGATTGCAGAGGAGATTGGAGAAGGTGAGAGGCTTACTGTAGCACAGTTGTAACCAGTTTGTGATTTTCGCTACGTTTGAACGAGATTTCAATATATTTCGATCGGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTAAAAATTCCAGATCGT</pcr_primer_p1>
		<pcr_primer_p2>TTCAGGATAATAGTGTTGGATGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTAAAAATTCCAGATCGTCTGGTTCCATATGCCCGAGATACTTCTACTAAAAGTCCATACTTTGCTGTCCTCCTTTGCACTTTCCTTGTGGCTCTTTGCTCAATGATTCAGAAGACTCTGCTTCTCAATTTTGTAATTTTCATGGCTCCAGCCAAACTAGTCATTACGGTACTATCTCCTCTACAGAGCTTAAAATCTTCCTTCATCCTAGATTCTCCTTGTCTACATCCAACACTATTATCCTGAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTAAAAATTCCAGATCGTCTGGTTCCATATGCCCGAGATACTTCTACTAAAAGTCCATACTTTGCTGTMCTCCTTTGCACTTTCCTTGTGGCTCTTTGCTCAATGATTCAGAAGACTCTGCTTCTCAATTTTGTAATTTTCATGGCTCCAGCCAAACTAGTCATTACGGTACTATCTCCTCTACAGAGCTTAAAATCTTCCTTCATCCTAGATTCTCCTTGTCTACATCCAACACTATTATCCTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22663</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>45046</contig_pos>
        <strand></strand>
        <context>TTCCATATGC[C/T]CGAGATACTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGTCTGGTTCCATATGC</left_flank>
        <right_flank>CGAGATACTTCTACTAAAAGTCCATACTTTGCTGTCCTCCTTTGCACTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCCAAAACGGCTTAAAAATAGGTCGAAAACCGACAAGAAACAGGTTGAGAACTTGTCGAAAACGGACCAAAAACGGGCAGAAAACTGGCTAAAAACAGGTTGAAAGCTGGTTAAAAACAGGCTGAAAACGGCTTAAAAACGGGCTGAAAGCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGGTCAAAACTGAATTGAATACGGACGGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGTCTGGTTCCATATGCCCGAGATACTTCTACTAAAAGTCCATACTTTGCTGTCCTCCTTTGCACTTTCCTTGTGGCTCTTTGCTCAATGATTCAGAAGACTCTGCTTCTCAATTTTGTAATTTTCATGGCTCCAGCCAAACTAGTCATTACGGTACTATCTCCTCTACAGAGCTTAAAATCTTCCTTCATCCTAGATTCTCCTTGTCTACATCCAACACTATTATCCTGAACAAATCGGCATTCCAGAAGAAACTTCCGGTTATAAATCAATCGGAAAGAAAAGAACACGAGTACATATCGATGATGGTGTCTCAGTTGATGATTCCATTTCTTTGATGCCACAAAGATCTAAAAGAGCAGACGATGATGAATCAGAAGTCAGTCATTCGACGTTTGATACAACGGCGTTTTTGTATATGAAAGCTACGAAAATGGAGACGGAGAGATTGCAGAGGAGATTGGAGAAGGTGAGAGGCTTACTGTAGCACAGTTGTAACCAGTTTGTGATTTTCGCTA</canonical>
            <polymorphic>GCCCAAAACGGCTTAAAAATAGGTCGAAAACCGACAAGAAACAGGTTGAGAACTTGTCGAAAACGGACCAAAAACGGGCAGAAAACTGGCTAAAAACAGGTTGAAAGCTGGTTAAAAACAGGCTGAAAACGGCTTAAAAACGGGCTGAAAGCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGGTCAAAACTGAATTGAATACGGACGGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGTCTGGTTCCATATGCYCGAGATACTTCTACTAAAAGTCCATACTTTGCTGTCCTCCTTTGCACTTTCCTTGTGGCTCTTTGCTCAATGATTCAGAAGACTCTGCTTCTCAATTTTGTAATTTTCATGGCTCCAGCCAAACTAGTCATTACGGTACTATCTCCTCTACAGAGCTTAAAATCTTCCTTCATCCTAGATTCTCCTTGTCTACATCCAACACTATTATCCTGAACAAATCGGCATTCCAGAAGAAACTTCCGGTTATAAATCAATCGGAAAGAAAAGAACACGAGTACATATCGATGATGGTGTCTCAGTTGATGATTCCATTTCTTTGATGCCACAAAGATCTAAAAGAGCAGACGATGATGAATCAGAAGTCAGTCATTCGACGTTTGATACAACGGCGTTTTTGTATATGAAAGCTACGAAAATGGAGACGGAGAGATTGCAGAGGAGATTGGAGAAGGTGAGAGGCTTACTGTAGCACAGTTGTAACCAGTTTGTGATTTTCGCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGAAATAAACGGACACAA</pcr_primer_p1>
		<pcr_primer_p2>CCATGAAAATTACAAAATTGAGA</pcr_primer_p2>
		<pcr_amplicon_size>681</pcr_amplicon_size>
		<canonical_amplicon>CCCGAGATACTTCTACTAAAAGTCCATACTTTGCTGTCCTCCTTTGCACTTTCCTTGTGGCTCTTTGCTCAATGATTCAGAAGACTCTGCTTCTCAATTTTGTAATTTTCATGG</canonical_amplicon>
		<polymorphic_amplicon>CYCGAGATACTTCTACTAAAAGTCCATACTTTGCTGTCCTCCTTTGCACTTTCCTTGTGGCTCTTTGCTCAATGATTCAGAAGACTCTGCTTCTCAATTTTGTAATTTTCATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22664</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>44948</contig_pos>
        <strand></strand>
        <context>gagcaaaaaa[A/T]taggttaaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAACAACGGGTCAAAACTGAATTGAATACGGACGGAAAACGAGCAAAAAA</left_flank>
        <right_flank>TAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAAAGACACCCCTTCTTGAATTGTGAAGGTGAAATAAACGGACACAACGGTTGGTCAAAACCGGACCAAAAAAGGGCCAAAGATAAGTTTAGAATGGCCCAAAACGGCTTAAAAATAGGTCGAAAACCGACAAGAAACAGGTTGAGAACTTGTCGAAAACGGACCAAAAACGGGCAGAAAACTGGCTAAAAACAGGTTGAAAGCTGGTTAAAAACAGGCTGAAAACGGCTTAAAAACGGGCTGAAAGCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGGTCAAAACTGAATTGAATACGGACGGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGTCTGGTTCCATATGCCCGAGATACTTCTACTAAAAGTCCATACTTTGCTGTCCTCCTTTGCACTTTCCTTGTGGCTCTTTGCTCAATGATTCAGAAGACTCTGCTTCTCAATTTTGTAATTTTCATGGCTCCAGCCAAACTAGTCATTACGGTACTATCTCCTCTACAGAGCTTAAAATCTTCCTTCATCCTAGATTCTCCTTGTCTACATCCAACACTATTATCCTGAACAAATCGGCATTCCAGAAGAAACTTCCGGTTATAAATCAATCGGAAAGAAAAGAACACGAGTACATATCGATGATGGTGTCTCAGTTGATGATTCCATTTCTTTGATGCCACAAAGATCTAAAAGAGCAGACGATGATGAATCAGAAGTCAGTCATTCGACGTTTGATACAACGGCGTTTTTGTATAT</canonical>
            <polymorphic>CTGAAAGACACCCCTTCTTGAATTGTGAAGGTGAAATAAACGGACACAACGGTTGGTCAAAACCGGACCAAAAAAGGGCCAAAGATAAGTTTAGAATGGCCCAAAACGGCTTAAAAATAGGTCGAAAACCGACAAGAAACAGGTTGAGAACTTGTCGAAAACGGACCAAAAACGGGCAGAAAACTGGCTAAAAACAGGTTGAAAGCTGGTTAAAAACAGGCTGAAAACGGCTTAAAAACGGGCTGAAAGCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGGTCAAAACTGAATTGAATACGGACGGAAAACGAGCAAAAAAWTAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGTCTGGTTCCATATGCCCGAGATACTTCTACTAAAAGTCCATACTTTGCTGTCCTCCTTTGCACTTTCCTTGTGGCTCTTTGCTCAATGATTCAGAAGACTCTGCTTCTCAATTTTGTAATTTTCATGGCTCCAGCCAAACTAGTCATTACGGTACTATCTCCTCTACAGAGCTTAAAATCTTCCTTCATCCTAGATTCTCCTTGTCTACATCCAACACTATTATCCTGAACAAATCGGCATTCCAGAAGAAACTTCCGGTTATAAATCAATCGGAAAGAAAAGAACACGAGTACATATCGATGATGGTGTCTCAGTTGATGATTCCATTTCTTTGATGCCACAAAGATCTAAAAGAGCAGACGATGATGAATCAGAAGTCAGTCATTCGACGTTTGATACAACGGCGTTTTTGTATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGAAATAAACGGACACAA</pcr_primer_p1>
		<pcr_primer_p2>ACGATCTGGAATTTTTAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>554</pcr_amplicon_size>
		<canonical_amplicon>GGTGAAATAAACGGACACAACGGTTGGTCAAAACCGGACCAAAAAAGGGCCAAAGATAAGTTTAGAATGGCCCAAAACGGCTTAAAAATAGGTCGAAAACCGACAAGAAACAGGTTGAGAACTTGTCGAAAACGGACCAAAAACGGGCAGAAAACTGGCTAAAAACAGGTTGAAAGCTGGTTAAAAACAGGCTGAAAACGGCTTAAAAACGGGCTGAAAGCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGGTCAAAACTGAATTGAATACGGACGGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGT</canonical_amplicon>
		<polymorphic_amplicon>GGTGAAATAAACGGACACAACGGTTGGTCAAAACCGGACCAAAAAAGGGCCAAAGATAAGTTTAGAATGGCCCAAAACGGCTTAAAAATAGGTCGAAAACCGACAAGAAACAGGTTGAGAACTTGTCGAAAACGGACCAAAAACGGGCAGAAAACTGGCTAAAAACAGGTTGAAAGCTGGTTAAAAACAGGCTGAAAACGGCTTAAAAACGGGCTGAAAGCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGGTCAAAACTGAATTGAATACGGACGGAAAACGAGCAAAAAAWTAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22665</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>44931</contig_pos>
        <strand></strand>
        <context>gaatacggac[G/C]gaaaacgagc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>ATTGACCGAAAACGGACCAACAACGGGTCAAAACTGAATTGAATACGGAC</left_flank>
        <right_flank>GAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCTATTTGCCGATTTCTGAAAGACACCCCTTCTTGAATTGTGAAGGTGAAATAAACGGACACAACGGTTGGTCAAAACCGGACCAAAAAAGGGCCAAAGATAAGTTTAGAATGGCCCAAAACGGCTTAAAAATAGGTCGAAAACCGACAAGAAACAGGTTGAGAACTTGTCGAAAACGGACCAAAAACGGGCAGAAAACTGGCTAAAAACAGGTTGAAAGCTGGTTAAAAACAGGCTGAAAACGGCTTAAAAACGGGCTGAAAGCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGGTCAAAACTGAATTGAATACGGACGGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGTCTGGTTCCATATGCCCGAGATACTTCTACTAAAAGTCCATACTTTGCTGTCCTCCTTTGCACTTTCCTTGTGGCTCTTTGCTCAATGATTCAGAAGACTCTGCTTCTCAATTTTGTAATTTTCATGGCTCCAGCCAAACTAGTCATTACGGTACTATCTCCTCTACAGAGCTTAAAATCTTCCTTCATCCTAGATTCTCCTTGTCTACATCCAACACTATTATCCTGAACAAATCGGCATTCCAGAAGAAACTTCCGGTTATAAATCAATCGGAAAGAAAAGAACACGAGTACATATCGATGATGGTGTCTCAGTTGATGATTCCATTTCTTTGATGCCACAAAGATCTAAAAGAGCAGACGATGATGAATCAGAAGTCAGTCATTCGACGTTTGATACA</canonical>
            <polymorphic>CATCTATTTGCCGATTTCTGAAAGACACCCCTTCTTGAATTGTGAAGGTGAAATAAACGGACACAACGGTTGGTCAAAACCGGACCAAAAAAGGGCCAAAGATAAGTTTAGAATGGCCCAAAACGGCTTAAAAATAGGTCGAAAACCGACAAGAAACAGGTTGAGAACTTGTCGAAAACGGACCAAAAACGGGCAGAAAACTGGCTAAAAACAGGTTGAAAGCTGGTTAAAAACAGGCTGAAAACGGCTTAAAAACGGGCTGAAAGCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGGTCAAAACTGAATTGAATACGGACSGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGTCTGGTTCCATATGCCCGAGATACTTCTACTAAAAGTCCATACTTTGCTGTCCTCCTTTGCACTTTCCTTGTGGCTCTTTGCTCAATGATTCAGAAGACTCTGCTTCTCAATTTTGTAATTTTCATGGCTCCAGCCAAACTAGTCATTACGGTACTATCTCCTCTACAGAGCTTAAAATCTTCCTTCATCCTAGATTCTCCTTGTCTACATCCAACACTATTATCCTGAACAAATCGGCATTCCAGAAGAAACTTCCGGTTATAAATCAATCGGAAAGAAAAGAACACGAGTACATATCGATGATGGTGTCTCAGTTGATGATTCCATTTCTTTGATGCCACAAAGATCTAAAAGAGCAGACGATGATGAATCAGAAGTCAGTCATTCGACGTTTGATACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGAAATAAACGGACACAA</pcr_primer_p1>
		<pcr_primer_p2>ACGATCTGGAATTTTTAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>554</pcr_amplicon_size>
		<canonical_amplicon>GGTGAAATAAACGGACACAACGGTTGGTCAAAACCGGACCAAAAAAGGGCCAAAGATAAGTTTAGAATGGCCCAAAACGGCTTAAAAATAGGTCGAAAACCGACAAGAAACAGGTTGAGAACTTGTCGAAAACGGACCAAAAACGGGCAGAAAACTGGCTAAAAACAGGTTGAAAGCTGGTTAAAAACAGGCTGAAAACGGCTTAAAAACGGGCTGAAAGCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGGTCAAAACTGAATTGAATACGGACGGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGT</canonical_amplicon>
		<polymorphic_amplicon>GGTGAAATAAACGGACACAACGGTTGGTCAAAACCGGACCAAAAAAGGGCCAAAGATAAGTTTAGAATGGCCCAAAACGGCTTAAAAATAGGTCGAAAACCGACAAGAAACAGGTTGAGAACTTGTCGAAAACGGACCAAAAACGGGCAGAAAACTGGCTAAAAACAGGTTGAAAGCTGGTTAAAAACAGGCTGAAAACGGCTTAAAAACGGGCTGAAAGCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGGTCAAAACTGAATTGAATACGGACSGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22666</snp_id>
        <super_contig>c013700708.Contig1</super_contig>
        <contig_pos>12493</contig_pos>
        <strand>+</strand>
        <context>GCTTATTGGA[C/G]GGTAGAGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACAATGGTTTATTCACTTACTATTCCACTGAGTGAGGTGAGCTTATTGGA</left_flank>
        <right_flank>GGTAGAGTTTTATCCATAATTGTGAACTGGGCCTTCGCGAGCCCTGCCAT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTAGTCTGATTGCTCTTTGAGAACTTGATATTAACTTTCTCTTCTGTTTACTAGTCAATGTCGGATTATTCATTTAGTGTACCATTGAGTGAGGTGAGATTTCGGAGACTACATGGGGCATTTTGAGCGATTTCCTGTGATAGTTGGCTGCCTTGCTTCTACCGTAGAGGAAAAGGCGCCCAGACGGTGGGCAACATGCTCAAAACCTGGGTAATTTGCCCAAGTCTACCCGAAGCATGTCCAACTTGTGCCTCAAGCTTGCCGCAAAAAGATGAGGATCAGTTTTGCTATTCTTTTTACAAAATCTTGTCCAAACGAGTCTTGCCAGCTTAGGTCATTTGCACAACTAACGTCAAGCTTCCTATTTAGTCTGTCAGTGATTCATTTAGTCTCACAGGCTTCCAGAAATCTAAAAATTCATTTTCTCTTCAGTTTACTAGTTATTGACAATGGTTTATTCACTTACTATTCCACTGAGTGAGGTGAGCTTATTGGACGGTAGAGTTTTATCCATAATTGTGAACTGGGCCTTCGCGAGCCCTGCCATAGTTTCTTTTAGAATCAATGTTTTTGGACAAATTATTATAAATAACATGACAGAATTCAATGAGTACTACAAAATGCACTTTTTTAGAAAACGTTATCTTGTCTATGAACAAAGTTACAAGGAGAAAACCGTTGGAGCTGCGCACTCACATCTATCTGGCCTTGTAAATTTGTTCATAGACAAGATACAGATTTTCCAATAGTGTCAATTTGTAGTACTCAACAAGTTCTGTCATATCAAATTTACCTGGCCCAAGAATATTTGTTCTGAAAAAATCTATGGCAAAGCCCACAAAGGCCCACTTTACGAGTATGGTTTTATCAATTTTTCATCAAATTTTAGGATTTCGGGGAAATCCCAGAATCTGCCAAAGACGGGGTTTATTACGCTGTCGTTACACTTTTTGTGAGTTCAACATTGGCGTCCACACTGCTCAGCGCAGCATTTCTA</canonical>
            <polymorphic>CATTTAGTCTGATTGCTCTTTGAGAACTTGATATTAACTTTCTCTTCTGTTTACTAGTCAATGTCGGATTATTCATTTAGTGTACCATTGAGTGAGGTGAGATTTCGGAGACTACATGGGGCATTTTGAGCGATTTCCTGTGATAGTTGGCTGCCTTGCTTCTACCGTAGAGGAAAAGGCGCCCAGACGGTGGGCAACATGCTCAAAACCTGGGTAATTTGCCCAAGTCTACCCGAAGCATGTCCAACTTGTGCCTCAAGCTTGCCGCAAAAAGATGAGGATCAGTTTTGCTATTCTTTTTACAAAATCTTGTCCAAACGAGTCTTGCCAGCTTAGGTCATTTGCACAACTAACGTCAAGCTTCCTATTTAGTCTGTCAGTGATTCATTTAGTCTCACAGGCTTCCAGAAATCTAAAAATTCATTTTCTCTTCAGTTTACTAGTTATTGACAATGGTTTATTCACTTACTATTCCACTGAGTGAGGTGAGCTTATTGGASGGTAGAGTTTTATCCATAATTGTGAACTGGGCCTTCGCGAGCCCTGCCATAGTTTCTTTTAGAATCAATGTTTTTGGACAAATTATTATAAATAACATGACAGAATTCAATGAGTACTACAAAATGCACTTTTTTAGAAAACGTTATCTTGTCTATGAACAAAGTTACAAGGAGAAAACCGTTGGAGCTGCGCACTCACATCTATCTGGCCTTGTAAATTTGTTCATAGACAAGATACAGATTTTCCAATAGTGTCAATTTGTAGTACTCAACAAGTTCTGTCATATCAAATTTACCTGGCCCAAGAATATTTGTTCTGAAAAAATCTATGGCAAAGCCCACAAAGGCCCACTTTACGAGTATGGTTTTATCAATTTTTCATCAAATTTTAGGATTTCGGGGAAATCCCAGAATCTGCCAAAGACGGGGTTTATTACGCTGTCGTTACACTTTTTGTGAGTTCAACATTGGCGTCCACACTGCTCAGCGCAGCATTTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>320 312 179 166 23</canonical_bands>
                <polymorphic_bands>491 320 166 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGACAATGGTTTATTCACTTACT</pcr_primer_p1>
		<pcr_primer_p2>ATAAAACCATACTCGTAAAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>TTGACAATGGTTTATTCACTTACTATTCCACTGAGTGAGGTGAGCTTATTGGACGGTAGAGTTTTATCCATAATTGTGAACTGGGCCTTCGCGAGCCCTGCCATAGTTTCTTTTAGAATCAATGTTTTTGGACAAATTATTATAAATAACATGACAGAATTCAATGAGTACTACAAAATGCACTTTTTTAGAAAACGTTATCTTGTCTATGAACAAAGTTACAAGGAGAAAACCGTTGGAGCTGCGCACTCACATCTATCTGGCCTTGTAAATTTGTTCATAGACAAGATACAGATTTTCCAATAGTGTCAATTTGTAGTACTCAACAAGTTCTGTCATATCAAATTTACCTGGCCCAAGAATATTTGTTCTGAAAAAATCTATGGCAAAGCCCACAAAGGCCCACTTTACGAGTATGGTTTTAT</canonical_amplicon>
		<polymorphic_amplicon>TTGACAATGGTTTATTCACTTACTATTCCACTGAGTGAGGTGAGCTTATTGGASGGTAGAGTTTTATCCATAATTGTGAACTGGGCCTTCGCGAGCCCTGCCATAGTTTCTTTTAGAATCAATGTTTTTGGACAAATTATTATAAATAACATGACAGAATTCAATGAGTACTACAAAATGCACTTTTTTAGAAAACGTTATCTTGTCTATGAACAAAGTTACAAGGAGAAAACCGTTGGAGCTGCGCACTCACATCTATCTGGCCTTGTAAATTTGTTCATAGACAAGATACAGATTTTCCAATAGTGTCAATTTGTAGTACTCAACAAGTTCTGTCATATCAAATTTACCTGGCCCAAGAATATTTGTTCTGAAAAAATCTATGGCAAAGCCCACAAAGGCCCACTTTACGAGTATGGTTTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22671</snp_id>
        <super_contig>c013700708.Contig1</super_contig>
        <contig_pos>15249</contig_pos>
        <strand>+</strand>
        <context>GAATTACAAA[A/T]AWCGGATCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTATACGATCCGATACGATCCGAATTGTAAGAATAATTTTGAATTACAAA</left_flank>
        <right_flank>AACGGATCTGTGATTTCAGATAGACACTATGCTACAAATAATTCTTCCGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCTACAGTAGTAGCAACATTTTTTAGCGCCGGGTATCTGGTGCTGTCTATTGTTTTATGGAGCCATTTTAAGCCGGTAAGAAAACCAGAAATTTCAATTATGTGAAAAAATATCTCAGATTCGATTTTTCTGGTTTTTAACACAACTAAACATAACGGTCTTTGTTTTATCTGCTTCAAATTTGCTGATAAATGTTCCAGCCACACTTAAACTGCTACCGGTTAACTTTGGAACCTCAGGTAACTTTGAGCCATTTTATCTCAGTTCCTGTGAAAGATATAAAAAAGTGGTCAACTGATAAAATGCTTATCATAGTATTACCAACATTGTATCAGTTAAAATTTTTTTGATATCTTGCTTGGGAAATGAGATAATTGAGCTCAAACCGCTTCTTCAGCAACCACTACTATCAATAAAGCGATACCTACTATACGATCCGAATTGTAACTATACGATCCGATACGATCCGAATTGTAAGAATAATTTTGAATTACAAATAACGGATCTGTGATTTCAGATAGACACTATGCTACAAATAATTCTTCCGATTTTTATTTTTTGCATTTATTTCGCTATTATTGTCAAAATTCTTTATATGAGGAGATTCACTCTCAGTGATAGTGAACGCTCAATTTTGAAGCAAGCGCTCTTTGTTTTCGTGGCGTTTCAGGTTGGAATTACGATTTTATACCGTAAAGCCTGTAATAGAAGGGCCCCCACACTGTGAAGTTAAAACTAATTAGTCCTGATTCCTATGCAAAATATCAAAAATGTGTCAACTGATGAAATTTTATTGGTATTTTGATGAACAATTCATCAATTGGACACTTTTTTGTATCTTCAAGAGTAACCTAGATTAATTGGCTCAAAGTTAAAAGTTTTTGGGGCTCTTCTATTAGAGGTTTGACAGTATATATTATTGTTACAGACTCCCTCGTTGATATTTTTATCCTTTCAAAGTATTCAAATCACAAATACAGGAGCATTTCTAGTGAAAC</canonical>
            <polymorphic>TTGCTACAGTAGTAGCAACATTTTTTAGCGCCGGGTATCTGGTGCTGTCTATTGTTTTATGGAGCCATTTTAAGCCGGTAAGAAAACCAGAAATTTCAATTATGTGAAAAAATATCTCAGATTCGATTTTTCTGGTTTTTAACACAACTAAACATAACGGTCTTTGTTTTATCTGCTTCAAATTTGCTGATAAATGTTCCAGCCACACTTAAACTGCTACCGGTTAACTTTGGAACCTCAGGTAACTTTGAGCCATTTTATCTCAGTTCCTGTGAAAGATATAAAAAAGTGGTCAACTGATAAAATGCTTATCATAGTATTACCAACATTGTATCAGTTAAAATTTTTTTGATATCTTGCTTGGGAAATGAGATAATTGAGCTCAAACCGCTTCTTCAGCAACCACTACTATCAATAAAGCGATACCTACTATACGATCCGAATTGTAACTATACGATCCGATACGATCCGAATTGTAAGAATAATTTTGAATTACAAAWAACGGATCTGTGATTTCAGATAGACACTATGCTACAAATAATTCTTCCGATTTTTATTTTTTGCATTTATTTCGCTATTATTGTCAAAATTCTTTATATGAGGAGATTCACTCTCAGTGATAGTGAACGCTCAATTTTGAAGCAAGCGCTCTTTGTTTTCGTGGCGTTTCAGGTTGGAATTACGATTTTATACCGTAAAGCCTGTAATAGAAGGGCCCCCACACTGTGAAGTTAAAACTAATTAGTCCTGATTCCTATGCAAAATATCAAAAATGTGTCAACTGATGAAATTTTATTGGTATTTTGATGAACAATTCATCAATTGGACACTTTTTTGTATCTTCAAGAGTAACCTAGATTAATTGGCTCAAAGTTAAAAGTTTTTGGGGCTCTTCTATTAGAGGTTTGACAGTATATATTATTGTTACAGACTCCCTCGTTGATATTTTTATCCTTTCAAAGTATTCAAATCACAAATACAGGAGCATTTCTAGTGAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTTCAGCAACCACTACTATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTGAGCGTTCACTATCAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTTCTTCAGCAACCACTACTATCAATAAAGCGATACCTACTATACGATCCGAATTGTAACTATACGATCCGATACGATCCGAATTGTAAGAATAATTTTGAATTACAAATAACGGATCTGTGATTTCAGATAGACACTATGCTACAAATAATTCTTCCGATTTTTATTTTTTGCATTTATTTCGCTATTATTGTCAAAATTCTTTATATGAGGAGATTCACTCTCAGTGATAGTGAACGCTCAATTTT</canonical_amplicon>
		<polymorphic_amplicon>CTTCTTCAGCAACCACTACTATCAATAAAGCGATACCTACTATACGATCCGAATTGTAACTATACGATCCGATACGATCCGAATTGTAAGAATAATTTTGAATTACAAAWAACGGATCTGTGATTTCAGATAGACACTATGCTACAAATAATTCTTCCGATTTTTATTTTTTGCATTTATTTCGCTATTATTGTCAAAATTCTTTATATGAGGAGATTCACTCTCAGTGATAGTGAACGCTCAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22673</snp_id>
        <super_contig>c013700708.Contig1</super_contig>
        <contig_pos>15354</contig_pos>
        <strand>+</strand>
        <context>TATATGAGGA[A/G]ATTCACTCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTTTTTGCATTTATTTCGCTATTATTGTCAAAATTCTTTATATGAGGA</left_flank>
        <right_flank>ATTCACTCTCAGTGATAGTGAACGCTCAATTTTGAAGCAAGCGCTCTTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAAATATCTCAGATTCGATTTTTCTGGTTTTTAACACAACTAAACATAACGGTCTTTGTTTTATCTGCTTCAAATTTGCTGATAAATGTTCCAGCCACACTTAAACTGCTACCGGTTAACTTTGGAACCTCAGGTAACTTTGAGCCATTTTATCTCAGTTCCTGTGAAAGATATAAAAAAGTGGTCAACTGATAAAATGCTTATCATAGTATTACCAACATTGTATCAGTTAAAATTTTTTTGATATCTTGCTTGGGAAATGAGATAATTGAGCTCAAACCGCTTCTTCAGCAACCACTACTATCAATAAAGCGATACCTACTATACGATCCGAATTGTAACTATACGATCCGATACGATCCGAATTGTAAGAATAATTTTGAATTACAAATAACGGATCTGTGATTTCAGATAGACACTATGCTACAAATAATTCTTCCGATTTTTATTTTTTGCATTTATTTCGCTATTATTGTCAAAATTCTTTATATGAGGAGATTCACTCTCAGTGATAGTGAACGCTCAATTTTGAAGCAAGCGCTCTTTGTTTTCGTGGCGTTTCAGGTTGGAATTACGATTTTATACCGTAAAGCCTGTAATAGAAGGGCCCCCACACTGTGAAGTTAAAACTAATTAGTCCTGATTCCTATGCAAAATATCAAAAATGTGTCAACTGATGAAATTTTATTGGTATTTTGATGAACAATTCATCAATTGGACACTTTTTTGTATCTTCAAGAGTAACCTAGATTAATTGGCTCAAAGTTAAAAGTTTTTGGGGCTCTTCTATTAGAGGTTTGACAGTATATATTATTGTTACAGACTCCCTCGTTGATATTTTTATCCTTTCAAAGTATTCAAATCACAAATACAGGAGCATTTCTAGTGAAACGATTTGTGAATACTGTAAGCTTTCAGAAAATCTGCAAAACGGATTTTCCTAATTTCAGATGGAAATTATTTCTGGCGCTGCCACGCCGTCATTTTTCTTCTTCAC</canonical>
            <polymorphic>GAAAAAATATCTCAGATTCGATTTTTCTGGTTTTTAACACAACTAAACATAACGGTCTTTGTTTTATCTGCTTCAAATTTGCTGATAAATGTTCCAGCCACACTTAAACTGCTACCGGTTAACTTTGGAACCTCAGGTAACTTTGAGCCATTTTATCTCAGTTCCTGTGAAAGATATAAAAAAGTGGTCAACTGATAAAATGCTTATCATAGTATTACCAACATTGTATCAGTTAAAATTTTTTTGATATCTTGCTTGGGAAATGAGATAATTGAGCTCAAACCGCTTCTTCAGCAACCACTACTATCAATAAAGCGATACCTACTATACGATCCGAATTGTAACTATACGATCCGATACGATCCGAATTGTAAGAATAATTTTGAATTACAAATAACGGATCTGTGATTTCAGATAGACACTATGCTACAAATAATTCTTCCGATTTTTATTTTTTGCATTTATTTCGCTATTATTGTCAAAATTCTTTATATGAGGARATTCACTCTCAGTGATAGTGAACGCTCAATTTTGAAGCAAGCGCTCTTTGTTTTCGTGGCGTTTCAGGTTGGAATTACGATTTTATACCGTAAAGCCTGTAATAGAAGGGCCCCCACACTGTGAAGTTAAAACTAATTAGTCCTGATTCCTATGCAAAATATCAAAAATGTGTCAACTGATGAAATTTTATTGGTATTTTGATGAACAATTCATCAATTGGACACTTTTTTGTATCTTCAAGAGTAACCTAGATTAATTGGCTCAAAGTTAAAAGTTTTTGGGGCTCTTCTATTAGAGGTTTGACAGTATATATTATTGTTACAGACTCCCTCGTTGATATTTTTATCCTTTCAAAGTATTCAAATCACAAATACAGGAGCATTTCTAGTGAAACGATTTGTGAATACTGTAAGCTTTCAGAAAATCTGCAAAACGGATTTTCCTAATTTCAGATGGAAATTATTTCTGGCGCTGCCACGCCGTCATTTTTCTTCTTCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>485 180 175 145 15</canonical_bands>
                <polymorphic_bands>630 180 175 15</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>485 355 145 15</canonical_bands>
                <polymorphic_bands>630 355 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACGATCCGAATTGTAAGAATA</pcr_primer_p1>
		<pcr_primer_p2>ATAAAATCGTAATTCCAACCTG</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>ATACGATCCGAATTGTAAGAATAATTTTGAATTACAAATAACGGATCTGTGATTTCAGATAGACACTATGCTACAAATAATTCTTCCGATTTTTATTTTTTGCATTTATTTCGCTATTATTGTCAAAATTCTTTATATGAGGAGATTCACTCTCAGTGATAGTGAACGCTCAATTTTGAAGCAAGCGCTCTTTGTTTTCGTGGCGTTTCAGGTTGGAATTACGATTTTAT</canonical_amplicon>
		<polymorphic_amplicon>ATACGATCCGAATTGTAAGAATAATTTTGAATTACAAATAACGGATCTGTGATTTCAGATAGACACTATGCTACAAATAATTCTTCCGATTTTTATTTTTTGCATTTATTTCGCTATTATTGTCAAAATTCTTTATATGAGGARATTCACTCTCAGTGATAGTGAACGCTCAATTTTGAAGCAAGCGCTCTTTGTTTTCGTGGCGTTTCAGGTTGGAATTACGATTTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22674</snp_id>
        <super_contig>c013700708.Contig1</super_contig>
        <contig_pos>15685</contig_pos>
        <strand></strand>
        <context>TACAGACTCC[C/T]TCGTTGATAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGGCTCTTCTATTAGAGGTTTGACAGTATATATTATTGTTACAGACTCC</left_flank>
        <right_flank>TCGTTGATATTTTTATCCTTTCAAAGTATTCAAATCACAAATACAGGAGC</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCGAATTGTAACTATACGATCCGATACGATCCGAATTGTAAGAATAATTTTGAATTACAAATAACGGATCTGTGATTTCAGATAGACACTATGCTACAAATAATTCTTCCGATTTTTATTTTTTGCATTTATTTCGCTATTATTGTCAAAATTCTTTATATGAGGAGATTCACTCTCAGTGATAGTGAACGCTCAATTTTGAAGCAAGCGCTCTTTGTTTTCGTGGCGTTTCAGGTTGGAATTACGATTTTATACCGTAAAGCCTGTAATAGAAGGGCCCCCACACTGTGAAGTTAAAACTAATTAGTCCTGATTCCTATGCAAAATATCAAAAATGTGTCAACTGATGAAATTTTATTGGTATTTTGATGAACAATTCATCAATTGGACACTTTTTTGTATCTTCAAGAGTAACCTAGATTAATTGGCTCAAAGTTAAAAGTTTTTGGGGCTCTTCTATTAGAGGTTTGACAGTATATATTATTGTTACAGACTCCCTCGTTGATATTTTTATCCTTTCAAAGTATTCAAATCACAAATACAGGAGCATTTCTAGTGAAACGATTTGTGAATACTGTAAGCTTTCAGAAAATCTGCAAAACGGATTTTCCTAATTTCAGATGGAAATTATTTCTGGCGCTGCCACGCCGTCATTTTTCTTCTTCACTTCTAAAGAGATTCGAAAACTGGTTTCAATAAGAGTTTCAGCAGTCAGTTCACAGAATGGATCGAATGTTCGAGAACGAGGGATTCGTTCTTTGTGATACCTGCAATAGAAGGGCTCTCTAACTTTTCACGATGAGCTAATTTATTTTGGTTCCTTTAATAAAATGTTTATCATAATATTTTTCTGTTGACACATTTTTGATATTACAAGTTTCACAATATCGAAATTAGAAAAAAAAATACTCACATCATCCAATCTCCCACTATAACCCAATAAGTGAATCCTCATCGAGAAATTGCTCTTCAAAGGGTGCCCATTCAATCTTCTCAAA</canonical>
            <polymorphic>ATCCGAATTGTAACTATACGATCCGATACGATCCGAATTGTAAGAATAATTTTGAATTACAAATAACGGATCTGTGATTTCAGATAGACACTATGCTACAAATAATTCTTCCGATTTTTATTTTTTGCATTTATTTCGCTATTATTGTCAAAATTCTTTATATGAGGAGATTCACTCTCAGTGATAGTGAACGCTCAATTTTGAAGCAAGCGCTCTTTGTTTTCGTGGCGTTTCAGGTTGGAATTACGATTTTATACCGTAAAGCCTGTAATAGAAGGGCCCCCACACTGTGAAGTTAAAACTAATTAGTCCTGATTCCTATGCAAAATATCAAAAATGTGTCAACTGATGAAATTTTATTGGTATTTTGATGAACAATTCATCAATTGGACACTTTTTTGTATCTTCAAGAGTAACCTAGATTAATTGGCTCAAAGTTAAAAGTTTTTGGGGCTCTTCTATTAGAGGTTTGACAGTATATATTATTGTTACAGACTCCYTCGTTGATATTTTTATCCTTTCAAAGTATTCAAATCACAAATACAGGAGCATTTCTAGTGAAACGATTTGTGAATACTGTAAGCTTTCAGAAAATCTGCAAAACGGATTTTCCTAATTTCAGATGGAAATTATTTCTGGCGCTGCCACGCCGTCATTTTTCTTCTTCACTTCTAAAGAGATTCGAAAACTGGTTTCAATAAGAGTTTCAGCAGTCAGTTCACAGAATGGATCGAATGTTCGAGAACGAGGGATTCGTTCTTTGTGATACCTGCAATAGAAGGGCTCTCTAACTTTTCACGATGAGCTAATTTATTTTGGTTCCTTTAATAAAATGTTTATCATAATATTTTTCTGTTGACACATTTTTGATATTACAAGTTTCACAATATCGAAATTAGAAAAAAAAATACTCACATCATCCAATCTCCCACTATAACCCAATAAGTGAATCCTCATCGAGAAATTGCTCTTCAAAGGGTGCCCATTCAATCTTCTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGTTGGAATTACGATTTTAT</pcr_primer_p1>
		<pcr_primer_p2>AATGCTCCTGTATTTGTGATTT</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>CAGGTTGGAATTACGATTTTATACCGTAAAGCCTGTAATAGAAGGGCCCCCACACTGTGAAGTTAAAACTAATTAGTCCTGATTCCTATGCAAAATATCAAAAATGTGTCAACTGATGAAATTTTATTGGTATTTTGATGAACAATTCATCAATTGGACACTTTTTTGTATCTTCAAGAGTAACCTAGATTAATTGGCTCAAAGTTAAAAGTTTTTGGGGCTCTTCTATTAGAGGTTTGACAGTATATATTATTGTTACAGACTCCCTCGTTGATATTTTTATCCTTTCAAAGTATTCAAATCACAAATACAGGAGCATT</canonical_amplicon>
		<polymorphic_amplicon>CAGGTTGGAATTACGATTTTATACCGTAAAGCCTGTAATAGAAGGGCCCCCACACTGTGAAGTTAAAACTAATTAGTCCTGATTCCTATGCAAAATATCAAAAATGTGTCAACTGATGAAATTTTATTGGTATTTTGATGAACAATTCATCAATTGGACACTTTTTTGTATCTTCAAGAGTAACCTAGATTAATTGGCTCAAAGTTAAAAGTTTTTGGGGCTCTTCTATTAGAGGTTTGACAGTATATATTATTGTTACAGACTCCYTCGTTGATATTTTTATCCTTTCAAAGTATTCAAATCACAAATACAGGAGCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22683</snp_id>
        <super_contig>c013701045.Contig1</super_contig>
        <contig_pos>21681</contig_pos>
        <strand></strand>
        <context>aaaagatatc[A/G]aaaattcctc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCGTATCTGCACTTTGAGCTTGACTATCTTGGTTCTTGGAAAAGATATC</left_flank>
        <right_flank>AAAATTCCTCAACTAATAAAATATTTATCATAATGTGCTTGAGCCAATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAATGCCACGTCATAATCCTTTTGTCCTTGTTCCTCCAAACGGCCACATCAAAGAAAAAAAGGAGAGAAGAAGAAGAAGAATCTTGTCATAAACCTCCGTTTCCTCTTCCTCCGAATGTCCTTTCTCAGGTTTTCGAACGGCGAGAAGAGTTCGAGAAAAATGTGATCAAGCGTGTCAATCTGTCTCGGAAGATCGACGGAAAGAGGCAATCCAATTATTATCCACACTTTTTAATTATTGCTGTAAAAAACCGTAAAACCTGGGTTTTAAAACTTTGAGCCTATTTATCTCGGTTTCTGGAAAAGATATCAGAAAGTTGCCAACTGATAGAAGATTGCTAATGTTATGATGAACATTTCATTAATTAGCAAAATTTTGACATCATTGACAGGAATGGAGATATGTACGGTCAAAGGAAGAGGACGGTCTCGTTGCAGCCGTTTTTCGGCCGTATCTGCACTTTGAGCTTGACTATCTTGGTTCTTGGAAAAGATATCAAAAATTCCTCAACTAATAAAATATTTATCATAATGTGCTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATTAAAAAGTGATCAACTAATAAAATGTCACTGATATTATGATAAACACTTTATCAGTTGTTAACTTTTTGATATCTTTTACAGGGACCGAAATAATTATAGTCAAAGTTTAGGGAAATTCTTTTACTGTTTCTAACAATACGTTTATGGCGTTTCGGAAGCATCTGGAAAACCTCTGAACATTTTTTAATTTAATACCTCACAATCTAAAAAACACCTAATTTTCATTTTCAGCTTTTCAAGTGTTTTTCTTACCATTTTTTTTACGTTTTCTCTCAAAAATATTCCCCTATCTCTTAAGACATTAAGAGATCAAAAAACCTGGCGACCGCAAAGATTCCTATCTAGATCTAATGACGCAATCGTATGATTTATGAGAGGTTCTTCTGGATAGCTAAGGTGTCTAGAAGAGAAATAGATTTTCAGGAT</canonical>
            <polymorphic>TGAATGCCACGTCATAATCCTTTTGTCCTTGTTCCTCCAAACGGCCACATCAAAGAAAAAAAGGAGAGAAGAAGAAGAAGAATCTTGTCATAAACCTCCGTTTCCTCTTCCTCCGAATGTCCTTTCTCAGGTTTTCGAACGGCGAGAAGAGTTCGAGAAAAATGTGATCAAGCGTGTCAATCTGTCTCGGAAGATCGACGGAAAGAGGCAATCCAATTATTATCCACACTTTTTAATTATTGCTGTAAAAAACCGTAAAACCTGGGTTTTAAAACTTTGAGCCTATTTATCTCGGTTTCTGGAAAAGATATCAGAAAGTTGCCAACTGATAGAAGATTGCTAATGTTATGATGAACATTTCATTAATTAGCAAAATTTTGACATCATTGACAGGAATGGAGATATGTACGGTCAAAGGAAGAGGACGGTCTCGTTGCAGCCGTTTTTCGGCCGTATCTGCACTTTGAGCTTGACTATCTTGGTTCTTGGAAAAGATATCRAAAATTCCTCAACTAATAAAATATTTATCATAATGTGCTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATTAAAAAGTGATCAACTAATAAAATGTCACTGATATTATGATAAACACTTTATCAGTTGTTAACTTTTTGATATCTTTTACAGGGACCGAAATAATTATAGTCAAAGTTTAGGGAAATTCTTTTACTGTTTCTAACAATACGTTTATGGCGTTTCGGAAGCATCTGGAAAACCTCTGAACATTTTTTAATTTAATACCTCACAATCTAAAAAACACCTAATTTTCATTTTCAGCTTTTCAAGTGTTTTTCTTACCATTTTTTTTACGTTTTCTCTCAAAAATATTCCCCTATCTCTTAAGACATTAAGAGATCAAAAAACCTGGCGACCGCAAAGATTCCTATCTAGATCTAATGACGCAATCGTATGATTTATGAGAGGTTCTTCTGGATAGCTAAGGTGTCTAGAAGAGAAATAGATTTTCAGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACACTTTTTAATTATTGCTGT</pcr_primer_p1>
		<pcr_primer_p2>GCCATAAACGTATTGTTAGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>499</pcr_amplicon_size>
		<canonical_amplicon>CCACACTTTTTAATTATTGCTGTAAAAAACCGTAAAACCTGGGTTTTAAAACTTTGAGCCTATTTATCTCGGTTTCTGGAAAAGATATCAGAAAGTTGCCAACTGATAGAAGATTGCTAATGTTATGATGAACATTTCATTAATTAGCAAAATTTTGACATCATTGACAGGAATGGAGATATGTACGGTCAAAGGAAGAGGACGGTCTCGTTGCAGCCGTTTTTCGGCCGTATCTGCACTTTGAGCTTGACTATCTTGGTTCTTGGAAAAGATATCAAAAATTCCTCAACTAATAAAATATTTATCATAATGTGCTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATTAAAAAGTGATCAACTAATAAAATGTCACTGATATTATGATAAACACTTTATCAGTTGTTAACTTTTTGATATCTTTTACAGGGACCGAAATAATTATAGTCAAAGTTTAGGGAAATTCTTTTACTGTTTCTAACAATACGTTTATGGC</canonical_amplicon>
		<polymorphic_amplicon>CCACACTTTTTAATTATTGCTGTAAAAAACCGTAAAACCTGGGTTTTAAAACTTTGAGCCTATTTATCTCGGTTTCTGGAAAAGATATCAGAAAGTTGCCAACTGATAGAAGATTGCTAATGTTATGATGAACATTTCATTAATTAGCAAAATTTTGACATCATTGACAGGAATGGAGATATGTACGGTCAAAGGAAGAGGACGGTCTCGTTGCAGCCGTTTTTCGGCCGTATCTGCACTTTGAGCTTGACTATCTTGGTTCTTGGAAAAGATATCRAAAATTCCTCAACTAATAAAATATTTATCATAATGTGCTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATTAAAAAGTGATCAACTAATAAAATGTCACTGATATTATGATAAACACTTTATCAGTTGTTAACTTTTTGATATCTTTTACAGGGACCGAAATAATTATAGTCAAAGTTTAGGGAAATTCTTTTACTGTTTCTAACAATACGTTTATGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22684</snp_id>
        <super_contig>c013701045.Contig1</super_contig>
        <contig_pos>21664</contig_pos>
        <strand></strand>
        <context>actatcttgg[T/G]tcttggaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GTTGCAGCCGTTTTTCGGCCGTATCTGCACTTTGAGCTTGACTATCTTGG</left_flank>
        <right_flank>TCTTGGAAAAGATATCAAAAATTCCTCAACTAATAAAATATTTATCATAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGCCAACCTTCACACCTGAATGCCACGTCATAATCCTTTTGTCCTTGTTCCTCCAAACGGCCACATCAAAGAAAAAAAGGAGAGAAGAAGAAGAAGAATCTTGTCATAAACCTCCGTTTCCTCTTCCTCCGAATGTCCTTTCTCAGGTTTTCGAACGGCGAGAAGAGTTCGAGAAAAATGTGATCAAGCGTGTCAATCTGTCTCGGAAGATCGACGGAAAGAGGCAATCCAATTATTATCCACACTTTTTAATTATTGCTGTAAAAAACCGTAAAACCTGGGTTTTAAAACTTTGAGCCTATTTATCTCGGTTTCTGGAAAAGATATCAGAAAGTTGCCAACTGATAGAAGATTGCTAATGTTATGATGAACATTTCATTAATTAGCAAAATTTTGACATCATTGACAGGAATGGAGATATGTACGGTCAAAGGAAGAGGACGGTCTCGTTGCAGCCGTTTTTCGGCCGTATCTGCACTTTGAGCTTGACTATCTTGGTTCTTGGAAAAGATATCAAAAATTCCTCAACTAATAAAATATTTATCATAATGTGCTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATTAAAAAGTGATCAACTAATAAAATGTCACTGATATTATGATAAACACTTTATCAGTTGTTAACTTTTTGATATCTTTTACAGGGACCGAAATAATTATAGTCAAAGTTTAGGGAAATTCTTTTACTGTTTCTAACAATACGTTTATGGCGTTTCGGAAGCATCTGGAAAACCTCTGAACATTTTTTAATTTAATACCTCACAATCTAAAAAACACCTAATTTTCATTTTCAGCTTTTCAAGTGTTTTTCTTACCATTTTTTTTACGTTTTCTCTCAAAAATATTCCCCTATCTCTTAAGACATTAAGAGATCAAAAAACCTGGCGACCGCAAAGATTCCTATCTAGATCTAATGACGCAATCGTATGATTTATGAGAGGTTCTTCTGGATAGCTAAGGTGTCTAGAAGAG</canonical>
            <polymorphic>CTGCCAACCTTCACACCTGAATGCCACGTCATAATCCTTTTGTCCTTGTTCCTCCAAACGGCCACATCAAAGAAAAAAAGGAGAGAAGAAGAAGAAGAATCTTGTCATAAACCTCCGTTTCCTCTTCCTCCGAATGTCCTTTCTCAGGTTTTCGAACGGCGAGAAGAGTTCGAGAAAAATGTGATCAAGCGTGTCAATCTGTCTCGGAAGATCGACGGAAAGAGGCAATCCAATTATTATCCACACTTTTTAATTATTGCTGTAAAAAACCGTAAAACCTGGGTTTTAAAACTTTGAGCCTATTTATCTCGGTTTCTGGAAAAGATATCAGAAAGTTGCCAACTGATAGAAGATTGCTAATGTTATGATGAACATTTCATTAATTAGCAAAATTTTGACATCATTGACAGGAATGGAGATATGTACGGTCAAAGGAAGAGGACGGTCTCGTTGCAGCCGTTTTTCGGCCGTATCTGCACTTTGAGCTTGACTATCTTGGKTCTTGGAAAAGATATCAAAAATTCCTCAACTAATAAAATATTTATCATAATGTGCTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATTAAAAAGTGATCAACTAATAAAATGTCACTGATATTATGATAAACACTTTATCAGTTGTTAACTTTTTGATATCTTTTACAGGGACCGAAATAATTATAGTCAAAGTTTAGGGAAATTCTTTTACTGTTTCTAACAATACGTTTATGGCGTTTCGGAAGCATCTGGAAAACCTCTGAACATTTTTTAATTTAATACCTCACAATCTAAAAAACACCTAATTTTCATTTTCAGCTTTTCAAGTGTTTTTCTTACCATTTTTTTTACGTTTTCTCTCAAAAATATTCCCCTATCTCTTAAGACATTAAGAGATCAAAAAACCTGGCGACCGCAAAGATTCCTATCTAGATCTAATGACGCAATCGTATGATTTATGAGAGGTTCTTCTGGATAGCTAAGGTGTCTAGAAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACACTTTTTAATTATTGCTGT</pcr_primer_p1>
		<pcr_primer_p2>GCCATAAACGTATTGTTAGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>499</pcr_amplicon_size>
		<canonical_amplicon>CCACACTTTTTAATTATTGCTGTAAAAAACCGTAAAACCTGGGTTTTAAAACTTTGAGCCTATTTATCTCGGTTTCTGGAAAAGATATCAGAAAGTTGCCAACTGATAGAAGATTGCTAATGTTATGATGAACATTTCATTAATTAGCAAAATTTTGACATCATTGACAGGAATGGAGATATGTACGGTCAAAGGAAGAGGACGGTCTCGTTGCAGCCGTTTTTCGGCCGTATCTGCACTTTGAGCTTGACTATCTTGGTTCTTGGAAAAGATATCAAAAATTCCTCAACTAATAAAATATTTATCATAATGTGCTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATTAAAAAGTGATCAACTAATAAAATGTCACTGATATTATGATAAACACTTTATCAGTTGTTAACTTTTTGATATCTTTTACAGGGACCGAAATAATTATAGTCAAAGTTTAGGGAAATTCTTTTACTGTTTCTAACAATACGTTTATGGC</canonical_amplicon>
		<polymorphic_amplicon>CCACACTTTTTAATTATTGCTGTAAAAAACCGTAAAACCTGGGTTTTAAAACTTTGAGCCTATTTATCTCGGTTTCTGGAAAAGATATCAGAAAGTTGCCAACTGATAGAAGATTGCTAATGTTATGATGAACATTTCATTAATTAGCAAAATTTTGACATCATTGACAGGAATGGAGATATGTACGGTCAAAGGAAGAGGACGGTCTCGTTGCAGCCGTTTTTCGGCCGTATCTGCACTTTGAGCTTGACTATCTTGGKTCTTGGAAAAGATATCAAAAATTCCTCAACTAATAAAATATTTATCATAATGTGCTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATTAAAAAGTGATCAACTAATAAAATGTCACTGATATTATGATAAACACTTTATCAGTTGTTAACTTTTTGATATCTTTTACAGGGACCGAAATAATTATAGTCAAAGTTTAGGGAAATTCTTTTACTGTTTCTAACAATACGTTTATGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22711</snp_id>
        <super_contig>c013701045.Contig1</super_contig>
        <contig_pos>84640</contig_pos>
        <strand>+</strand>
        <context>ATAGGTTCAG[C/G]TTTYTGGGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAGTTCAAAAACATTCCCAATCAAAAAAAAGTTCAAAAATATAGGTTCAG</left_flank>
        <right_flank>TTTTTGGGTCTCTTTTAGCTCCACGTTCCCCAGCTCATCTGAAAATGTGC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATTGGAACACTCTCCGAGTTGTCGCGGAGTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTATACTGAAAGCGGTTTTGAAAAGCCACAGTGCGGCGTGACGGGCGTTAGTGCGCTTACAAGGAACTATTATTTTTACAATGCTAACAAGAATTAAAGCAAACTCACACATCAATTAGGTCCAAAATATTGTGATTCTCCATCGATTTTTAGGGTTAAATAGGCCGAGACAGTGACTATTAGGGAAAAGGAGGAGGGCAGTGTTGACAATGGCAGATGGTGAGAGCTGCATATGAATGACCTTGGTATGGTCCCATCCCCTAGGATACTAATTGTAAGATTCTGATTCTCTAATTTCTTGGGATTTTTTTTGGTTTATAGATTCTTGATTTTCTAGATCATGAGAACTTTTAGAATATTTTTTTTCCCAATCAAAAAAAAGTTCAAAAACATTCCCAATCAAAAAAAAGTTCAAAAATATAGGTTCAGGTTTTTGGGTCTCTTTTAGCTCCACGTTCCCCAGCTCATCTGAAAATGTGCCAAATTTTTTGACTGAAAATCCAGCAGTCTGAAAAAAATTCAATCAAAATTTACCGGCATTTTGCTTCCGTACAAACTTTGTAAGTTACAGTACCCCTCCCCCCTTTAATTTCAATTATCTCGGTTACTGCAAGAGATATCAAAAATAGGTCAGCTAATAAAATGCTTATCATAATATCAGCAAAATTTTATCAAAAACCCAGACCATTGAACTTAAAGTCTAGTGCCGTTCTATTAGAGGAAAATACTATTTTCCAGAGCAAATACAGATTGATTGTTACAAATATTCGAAAAAGAAAGAAAAAGTAAGAATCATTCGAATGTGGACCCACAACATTTTCCTATTGTTTGCCTTCTGTTTTGGTGTGGTTTTAACTGGAAGTGGCGATGGGACGGATGGGAAGGGTTAGTTAAACCGTTATATCTCTAAAACTAAAAGAGATATCAAAA</canonical>
            <polymorphic>AGATTGGAACACTCTCCGAGTTGTCGCGGAGTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTATACTGAAAGCGGTTTTGAAAAGCCACAGTGCGGCGTGACGGGCGTTAGTGCGCTTACAAGGAACTATTATTTTTACAATGCTAACAAGAATTAAAGCAAACTCACACATCAATTAGGTCCAAAATATTGTGATTCTCCATCGATTTTTAGGGTTAAATAGGCCGAGACAGTGACTATTAGGGAAAAGGAGGAGGGCAGTGTTGACAATGGCAGATGGTGAGAGCTGCATATGAATGACCTTGGTATGGTCCCATCCCCTAGGATACTAATTGTAAGATTCTGATTCTCTAATTTCTTGGGATTTTTTTTGGTTTATAGATTCTTGATTTTCTAGATCATGAGAACTTTTAGAATATTTTTTTTCCCAATCAAAAAAAAGTTCAAAAACATTCCCAATCAAAAAAAAGTTCAAAAATATAGGTTCAGSTTTTTGGGTCTCTTTTAGCTCCACGTTCCCCAGCTCATCTGAAAATGTGCCAAATTTTTTGACTGAAAATCCAGCAGTCTGAAAAAAATTCAATCAAAATTTACCGGCATTTTGCTTCCGTACAAACTTTGTAAGTTACAGTACCCCTCCCCCCTTTAATTTCAATTATCTCGGTTACTGCAAGAGATATCAAAAATAGGTCAGCTAATAAAATGCTTATCATAATATCAGCAAAATTTTATCAAAAACCCAGACCATTGAACTTAAAGTCTAGTGCCGTTCTATTAGAGGAAAATACTATTTTCCAGAGCAAATACAGATTGATTGTTACAAATATTCGAAAAAGAAAGAAAAAGTAAGAATCATTCGAATGTGGACCCACAACATTTTCCTATTGTTTGCCTTCTGTTTTGGTGTGGTTTTAACTGGAAGTGGCGATGGGACGGATGGGAAGGGTTAGTTAAACCGTTATATCTCTAAAACTAAAAGAGATATCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCCCTAGGATACTAATTGTAAGA</pcr_primer_p1>
		<pcr_primer_p2>ACTGCTGGATTTTCAGTCAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCCCCTAGGATACTAATTGTAAGATTCTGATTCTCTAATTTCTTGGGATTTTTTTTGGTTTATAGATTCTTGATTTTCTAGATCATGAGAACTTTTAGAATATTTTTTTTCCCAATCAAAAAAAAGTTCAAAAACATTCCCAATCAAAAAAAAGTTCAAAAATATAGGTTCAGGTTTTTGGGTCTCTTTTAGCTCCACGTTCCCCAGCTCATCTGAAAATGTGCCAAATTTTTTGACTGAAAATCCAGCAGT</canonical_amplicon>
		<polymorphic_amplicon>TCCCCTAGGATACTAATTGTAAGATTCTGATTCTCTAATTTCTTGGGATTTTTTTTGGTTTATAGATTCTTGATTTTCTAGATCATGAGAACTTTTAGAATATTTTTTTTCCCAATCAAAAAAAAGTTCAAAAACATTCCCAATCAAAAAAAAGTTCAAAAATATAGGTTCAGSTTTTTGGGTCTCTTTTAGCTCCACGTTCCCCAGCTCATCTGAAAATGTGCCAAATTTTTTGACTGAAAATCCAGCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22712</snp_id>
        <super_contig>c013701045.Contig1</super_contig>
        <contig_pos>84644</contig_pos>
        <strand>+</strand>
        <context>GTTCAGSTTT[C/T]TGGGTCTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAAAAACATTCCCAATCAAAAAAAAGTTCAAAAATATAGGTTCAGGTTT</left_flank>
        <right_flank>TGGGTCTCTTTTAGCTCCACGTTCCCCAGCTCATCTGAAAATGTGCCAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAACACTCTCCGAGTTGTCGCGGAGTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTATACTGAAAGCGGTTTTGAAAAGCCACAGTGCGGCGTGACGGGCGTTAGTGCGCTTACAAGGAACTATTATTTTTACAATGCTAACAAGAATTAAAGCAAACTCACACATCAATTAGGTCCAAAATATTGTGATTCTCCATCGATTTTTAGGGTTAAATAGGCCGAGACAGTGACTATTAGGGAAAAGGAGGAGGGCAGTGTTGACAATGGCAGATGGTGAGAGCTGCATATGAATGACCTTGGTATGGTCCCATCCCCTAGGATACTAATTGTAAGATTCTGATTCTCTAATTTCTTGGGATTTTTTTTGGTTTATAGATTCTTGATTTTCTAGATCATGAGAACTTTTAGAATATTTTTTTTCCCAATCAAAAAAAAGTTCAAAAACATTCCCAATCAAAAAAAAGTTCAAAAATATAGGTTCAGGTTTTTGGGTCTCTTTTAGCTCCACGTTCCCCAGCTCATCTGAAAATGTGCCAAATTTTTTGACTGAAAATCCAGCAGTCTGAAAAAAATTCAATCAAAATTTACCGGCATTTTGCTTCCGTACAAACTTTGTAAGTTACAGTACCCCTCCCCCCTTTAATTTCAATTATCTCGGTTACTGCAAGAGATATCAAAAATAGGTCAGCTAATAAAATGCTTATCATAATATCAGCAAAATTTTATCAAAAACCCAGACCATTGAACTTAAAGTCTAGTGCCGTTCTATTAGAGGAAAATACTATTTTCCAGAGCAAATACAGATTGATTGTTACAAATATTCGAAAAAGAAAGAAAAAGTAAGAATCATTCGAATGTGGACCCACAACATTTTCCTATTGTTTGCCTTCTGTTTTGGTGTGGTTTTAACTGGAAGTGGCGATGGGACGGATGGGAAGGGTTAGTTAAACCGTTATATCTCTAAAACTAAAAGAGATATCAAAAATGT</canonical>
            <polymorphic>TGGAACACTCTCCGAGTTGTCGCGGAGTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTATACTGAAAGCGGTTTTGAAAAGCCACAGTGCGGCGTGACGGGCGTTAGTGCGCTTACAAGGAACTATTATTTTTACAATGCTAACAAGAATTAAAGCAAACTCACACATCAATTAGGTCCAAAATATTGTGATTCTCCATCGATTTTTAGGGTTAAATAGGCCGAGACAGTGACTATTAGGGAAAAGGAGGAGGGCAGTGTTGACAATGGCAGATGGTGAGAGCTGCATATGAATGACCTTGGTATGGTCCCATCCCCTAGGATACTAATTGTAAGATTCTGATTCTCTAATTTCTTGGGATTTTTTTTGGTTTATAGATTCTTGATTTTCTAGATCATGAGAACTTTTAGAATATTTTTTTTCCCAATCAAAAAAAAGTTCAAAAACATTCCCAATCAAAAAAAAGTTCAAAAATATAGGTTCAGGTTTYTGGGTCTCTTTTAGCTCCACGTTCCCCAGCTCATCTGAAAATGTGCCAAATTTTTTGACTGAAAATCCAGCAGTCTGAAAAAAATTCAATCAAAATTTACCGGCATTTTGCTTCCGTACAAACTTTGTAAGTTACAGTACCCCTCCCCCCTTTAATTTCAATTATCTCGGTTACTGCAAGAGATATCAAAAATAGGTCAGCTAATAAAATGCTTATCATAATATCAGCAAAATTTTATCAAAAACCCAGACCATTGAACTTAAAGTCTAGTGCCGTTCTATTAGAGGAAAATACTATTTTCCAGAGCAAATACAGATTGATTGTTACAAATATTCGAAAAAGAAAGAAAAAGTAAGAATCATTCGAATGTGGACCCACAACATTTTCCTATTGTTTGCCTTCTGTTTTGGTGTGGTTTTAACTGGAAGTGGCGATGGGACGGATGGGAAGGGTTAGTTAAACCGTTATATCTCTAAAACTAAAAGAGATATCAAAAATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCCCTAGGATACTAATTGTAAGA</pcr_primer_p1>
		<pcr_primer_p2>ACTGCTGGATTTTCAGTCAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCCCCTAGGATACTAATTGTAAGATTCTGATTCTCTAATTTCTTGGGATTTTTTTTGGTTTATAGATTCTTGATTTTCTAGATCATGAGAACTTTTAGAATATTTTTTTTCCCAATCAAAAAAAAGTTCAAAAACATTCCCAATCAAAAAAAAGTTCAAAAATATAGGTTCAGGTTTTTGGGTCTCTTTTAGCTCCACGTTCCCCAGCTCATCTGAAAATGTGCCAAATTTTTTGACTGAAAATCCAGCAGT</canonical_amplicon>
		<polymorphic_amplicon>TCCCCTAGGATACTAATTGTAAGATTCTGATTCTCTAATTTCTTGGGATTTTTTTTGGTTTATAGATTCTTGATTTTCTAGATCATGAGAACTTTTAGAATATTTTTTTTCCCAATCAAAAAAAAGTTCAAAAACATTCCCAATCAAAAAAAAGTTCAAAAATATAGGTTCAGGTTTYTGGGTCTCTTTTAGCTCCACGTTCCCCAGCTCATCTGAAAATGTGCCAAATTTTTTGACTGAAAATCCAGCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22713</snp_id>
        <super_contig>c013701045.Contig1</super_contig>
        <contig_pos>86293</contig_pos>
        <strand>+</strand>
        <context>TATGGTCCAT[A/T]GACAAGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGAAAATCCTTGAAAAAATGTTCAAGATAACTAAGCCGTTATGGTCCAT</left_flank>
        <right_flank>GACAAGAAAAATGGGATATTCTTCCAACAAGCCGTCGAAAGTTTAAATTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATTATATACCGGAAGCTTTATCAGCATCAATCCAAAGATTGAAGGATAAAACTGTAGATTTGGCGAACTTGGTACCAAACGATTGGAAAATTCTGGAATCTGGAAGGGAGTGGTTGAGTACTGTAAAAGAGGGATATGATAGTGCTTCGAGGATCAGAGATTTTGAGTTTCAAGATTTTTTTGACCTACTTTACAAGAATGAAGAACTATTTCCATGTCCGGATGTTATTCAAAATGTGCCGAAAAGTGATGACCTCGATTCTCAAAAATCTCAAAATTGGCTTGTCCAAAACACTCAACCCATCTTGAATTGCTTCAAAAATCTGAAAAAAGATTCCACAAATTTTCGGAAAATCGAATCCAATATTGATCATTTTTTGGCACTAAACACCCTGCTTGATACCTTCCAAACTCTCGAAAAACTCCAAATTCAATCATCGAATTTTTCGAAAATCCTTGAAAAAATGTTCAAGATAACTAAGCCGTTATGGTCCATTGACAAGAAAAATGGGATATTCTTCCAACAAGCCGTCGAAAGTTTAAATTCAATGTTTCCAATCGCTTCGCATTCGGAAATCGTTCTCACTTTGGGATTTCCTGAAAAAGGGGATATGGCAAAAGTGGTGGATGATTTGAAGAGTGAATGGTTTAATCAGAAAGTGGCGCGAGGCAAAAGTGTCGATGTGTTGAGAACCGAGTTGGCTGGATTTTTTAAGGTAGGGCCCTTTTTTAAATTTCCAAAATATTGACTTTAAAGCGAGTTACGACCATTTTAGTATGATGGCCTAGAAAACCAAATCTTGGGGATCTAGGCCATAGTGCACATAATCAAAGAGCAAGTTCTGATAGTCTCATATCAGTTTTGAGAATTCGAAAATATCGATTTTGAAGCGAGTTACACACATTTTAGTTTGGTGGCCTAGAAAACCAAACTTTGCAAAAGTTAGGCCATGGTGTGCACGGCTCTGAAAAACAAGCTTTGAGGGTTCCAAATATT</canonical>
            <polymorphic>TAAATTATATACCGGAAGCTTTATCAGCATCAATCCAAAGATTGAAGGATAAAACTGTAGATTTGGCGAACTTGGTACCAAACGATTGGAAAATTCTGGAATCTGGAAGGGAGTGGTTGAGTACTGTAAAAGAGGGATATGATAGTGCTTCGAGGATCAGAGATTTTGAGTTTCAAGATTTTTTTGACCTACTTTACAAGAATGAAGAACTATTTCCATGTCCGGATGTTATTCAAAATGTGCCGAAAAGTGATGACCTCGATTCTCAAAAATCTCAAAATTGGCTTGTCCAAAACACTCAACCCATCTTGAATTGCTTCAAAAATCTGAAAAAAGATTCCACAAATTTTCGGAAAATCGAATCCAATATTGATCATTTTTTGGCACTAAACACCCTGCTTGATACCTTCCAAACTCTCGAAAAACTCCAAATTCAATCATCGAATTTTTCGAAAATCCTTGAAAAAATGTTCAAGATAACTAAGCCGTTATGGTCCATWGACAAGAAAAATGGGATATTCTTCCAACAAGCCGTCGAAAGTTTAAATTCAATGTTTCCAATCGCTTCGCATTCGGAAATCGTTCTCACTTTGGGATTTCCTGAAAAAGGGGATATGGCAAAAGTGGTGGATGATTTGAAGAGTGAATGGTTTAATCAGAAAGTGGCGCGAGGCAAAAGTGTCGATGTGTTGAGAACCGAGTTGGCTGGATTTTTTAAGGTAGGGCCCTTTTTTAAATTTCCAAAATATTGACTTTAAAGCGAGTTACGACCATTTTAGTATGATGGCCTAGAAAACCAAATCTTGGGGATCTAGGCCATAGTGCACATAATCAAAGAGCAAGTTCTGATAGTCTCATATCAGTTTTGAGAATTCGAAAATATCGATTTTGAAGCGAGTTACACACATTTTAGTTTGGTGGCCTAGAAAACCAAACTTTGCAAAAGTTAGGCCATGGTGTGCACGGCTCTGAAAAACAAGCTTTGAGGGTTCCAAATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCCAAACTCTCGAAAAACT</pcr_primer_p1>
		<pcr_primer_p2>TTAAACCATTCACTCTTCAAATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTCCAAACTCTCGAAAAACTCCAAATTCAATCATCGAATTTTTCGAAAATCCTTGAAAAAATGTTCAAGATAACTAAGCCGTTATGGTCCATTGACAAGAAAAATGGGATATTCTTCCAACAAGCCGTCGAAAGTTTAAATTCAATGTTTCCAATCGCTTCGCATTCGGAAATCGTTCTCACTTTGGGATTTCCTGAAAAAGGGGATATGGCAAAAGTGGTGGATGATTTGAAGAGTGAATGGTTTAA</canonical_amplicon>
		<polymorphic_amplicon>CTTCCAAACTCTCGAAAAACTCCAAATTCAATCATCGAATTTTTCGAAAATCCTTGAAAAAATGTTCAAGATAACTAAGCCGTTATGGTCCATWGACAAGAAAAATGGGATATTCTTCCAACAAGCCGTCGAAAGTTTAAATTCAATGTTTCCAATCGCTTCGCATTCGGAAATCGTTCTCACTTTGGGATTTCCTGAAAAAGGGGATATGGCAAAAGTGGTGGATGATTTGAAGAGTGAATGGTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22714</snp_id>
        <super_contig>c013701045.Contig1</super_contig>
        <contig_pos>86271</contig_pos>
        <strand>+</strand>
        <context>ATGTTCAAGA[C/T]AACTAAGCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAAATTCAATCATCGAATTTTTCGAAAATCCTTGAAAAAATGTTCAAGA</left_flank>
        <right_flank>AACTAAGCCGTTATGGTCCATTGACAAGAAAAATGGGATATTCTTCCAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACAGAATTTCACAAATTTAATAAATTATATACCGGAAGCTTTATCAGCATCAATCCAAAGATTGAAGGATAAAACTGTAGATTTGGCGAACTTGGTACCAAACGATTGGAAAATTCTGGAATCTGGAAGGGAGTGGTTGAGTACTGTAAAAGAGGGATATGATAGTGCTTCGAGGATCAGAGATTTTGAGTTTCAAGATTTTTTTGACCTACTTTACAAGAATGAAGAACTATTTCCATGTCCGGATGTTATTCAAAATGTGCCGAAAAGTGATGACCTCGATTCTCAAAAATCTCAAAATTGGCTTGTCCAAAACACTCAACCCATCTTGAATTGCTTCAAAAATCTGAAAAAAGATTCCACAAATTTTCGGAAAATCGAATCCAATATTGATCATTTTTTGGCACTAAACACCCTGCTTGATACCTTCCAAACTCTCGAAAAACTCCAAATTCAATCATCGAATTTTTCGAAAATCCTTGAAAAAATGTTCAAGATAACTAAGCCGTTATGGTCCATTGACAAGAAAAATGGGATATTCTTCCAACAAGCCGTCGAAAGTTTAAATTCAATGTTTCCAATCGCTTCGCATTCGGAAATCGTTCTCACTTTGGGATTTCCTGAAAAAGGGGATATGGCAAAAGTGGTGGATGATTTGAAGAGTGAATGGTTTAATCAGAAAGTGGCGCGAGGCAAAAGTGTCGATGTGTTGAGAACCGAGTTGGCTGGATTTTTTAAGGTAGGGCCCTTTTTTAAATTTCCAAAATATTGACTTTAAAGCGAGTTACGACCATTTTAGTATGATGGCCTAGAAAACCAAATCTTGGGGATCTAGGCCATAGTGCACATAATCAAAGAGCAAGTTCTGATAGTCTCATATCAGTTTTGAGAATTCGAAAATATCGATTTTGAAGCGAGTTACACACATTTTAGTTTGGTGGCCTAGAAAACCAAACTTTGCAAAAGTTAGGCCATGGTGTGCACGGCTCTGAAAAACA</canonical>
            <polymorphic>CCACAGAATTTCACAAATTTAATAAATTATATACCGGAAGCTTTATCAGCATCAATCCAAAGATTGAAGGATAAAACTGTAGATTTGGCGAACTTGGTACCAAACGATTGGAAAATTCTGGAATCTGGAAGGGAGTGGTTGAGTACTGTAAAAGAGGGATATGATAGTGCTTCGAGGATCAGAGATTTTGAGTTTCAAGATTTTTTTGACCTACTTTACAAGAATGAAGAACTATTTCCATGTCCGGATGTTATTCAAAATGTGCCGAAAAGTGATGACCTCGATTCTCAAAAATCTCAAAATTGGCTTGTCCAAAACACTCAACCCATCTTGAATTGCTTCAAAAATCTGAAAAAAGATTCCACAAATTTTCGGAAAATCGAATCCAATATTGATCATTTTTTGGCACTAAACACCCTGCTTGATACCTTCCAAACTCTCGAAAAACTCCAAATTCAATCATCGAATTTTTCGAAAATCCTTGAAAAAATGTTCAAGAYAACTAAGCCGTTATGGTCCATTGACAAGAAAAATGGGATATTCTTCCAACAAGCCGTCGAAAGTTTAAATTCAATGTTTCCAATCGCTTCGCATTCGGAAATCGTTCTCACTTTGGGATTTCCTGAAAAAGGGGATATGGCAAAAGTGGTGGATGATTTGAAGAGTGAATGGTTTAATCAGAAAGTGGCGCGAGGCAAAAGTGTCGATGTGTTGAGAACCGAGTTGGCTGGATTTTTTAAGGTAGGGCCCTTTTTTAAATTTCCAAAATATTGACTTTAAAGCGAGTTACGACCATTTTAGTATGATGGCCTAGAAAACCAAATCTTGGGGATCTAGGCCATAGTGCACATAATCAAAGAGCAAGTTCTGATAGTCTCATATCAGTTTTGAGAATTCGAAAATATCGATTTTGAAGCGAGTTACACACATTTTAGTTTGGTGGCCTAGAAAACCAAACTTTGCAAAAGTTAGGCCATGGTGTGCACGGCTCTGAAAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCCAAACTCTCGAAAAACT</pcr_primer_p1>
		<pcr_primer_p2>TTAAACCATTCACTCTTCAAATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTCCAAACTCTCGAAAAACTCCAAATTCAATCATCGAATTTTTCGAAAATCCTTGAAAAAATGTTCAAGATAACTAAGCCGTTATGGTCCATTGACAAGAAAAATGGGATATTCTTCCAACAAGCCGTCGAAAGTTTAAATTCAATGTTTCCAATCGCTTCGCATTCGGAAATCGTTCTCACTTTGGGATTTCCTGAAAAAGGGGATATGGCAAAAGTGGTGGATGATTTGAAGAGTGAATGGTTTAA</canonical_amplicon>
		<polymorphic_amplicon>CTTCCAAACTCTCGAAAAACTCCAAATTCAATCATCGAATTTTTCGAAAATCCTTGAAAAAATGTTCAAGAYAACTAAGCCGTTATGGTCCATTGACAAGAAAAATGGGATATTCTTCCAACAAGCCGTCGAAAGTTTAAATTCAATGTTTCCAATCGCTTCGCATTCGGAAATCGTTCTCACTTTGGGATTTCCTGAAAAAGGGGATATGGCAAAAGTGGTGGATGATTTGAAGAGTGAATGGTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22715</snp_id>
        <super_contig>c013701045.Contig1</super_contig>
        <contig_pos>86221</contig_pos>
        <strand>+</strand>
        <context>TCGAAAAACT[C/T]CAAATTCAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTGGCACTAAACACCCTGCTTGATACCTTCCAAACTCTCGAAAAACT</left_flank>
        <right_flank>CAAATTCAATCATCGAATTTTTCGAAAATCCTTGAAAAAATGTTCAAGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAGTCAGTTAAAGTTCGTGACGTCATCACAGAACTTCTGAAGGTGGACCCACAGAATTTCACAAATTTAATAAATTATATACCGGAAGCTTTATCAGCATCAATCCAAAGATTGAAGGATAAAACTGTAGATTTGGCGAACTTGGTACCAAACGATTGGAAAATTCTGGAATCTGGAAGGGAGTGGTTGAGTACTGTAAAAGAGGGATATGATAGTGCTTCGAGGATCAGAGATTTTGAGTTTCAAGATTTTTTTGACCTACTTTACAAGAATGAAGAACTATTTCCATGTCCGGATGTTATTCAAAATGTGCCGAAAAGTGATGACCTCGATTCTCAAAAATCTCAAAATTGGCTTGTCCAAAACACTCAACCCATCTTGAATTGCTTCAAAAATCTGAAAAAAGATTCCACAAATTTTCGGAAAATCGAATCCAATATTGATCATTTTTTGGCACTAAACACCCTGCTTGATACCTTCCAAACTCTCGAAAAACTCCAAATTCAATCATCGAATTTTTCGAAAATCCTTGAAAAAATGTTCAAGATAACTAAGCCGTTATGGTCCATTGACAAGAAAAATGGGATATTCTTCCAACAAGCCGTCGAAAGTTTAAATTCAATGTTTCCAATCGCTTCGCATTCGGAAATCGTTCTCACTTTGGGATTTCCTGAAAAAGGGGATATGGCAAAAGTGGTGGATGATTTGAAGAGTGAATGGTTTAATCAGAAAGTGGCGCGAGGCAAAAGTGTCGATGTGTTGAGAACCGAGTTGGCTGGATTTTTTAAGGTAGGGCCCTTTTTTAAATTTCCAAAATATTGACTTTAAAGCGAGTTACGACCATTTTAGTATGATGGCCTAGAAAACCAAATCTTGGGGATCTAGGCCATAGTGCACATAATCAAAGAGCAAGTTCTGATAGTCTCATATCAGTTTTGAGAATTCGAAAATATCGATTTTGAAGCGAGTTACACACATTTTAGTTTGGTGGCCTAGAA</canonical>
            <polymorphic>AGAAGTCAGTTAAAGTTCGTGACGTCATCACAGAACTTCTGAAGGTGGACCCACAGAATTTCACAAATTTAATAAATTATATACCGGAAGCTTTATCAGCATCAATCCAAAGATTGAAGGATAAAACTGTAGATTTGGCGAACTTGGTACCAAACGATTGGAAAATTCTGGAATCTGGAAGGGAGTGGTTGAGTACTGTAAAAGAGGGATATGATAGTGCTTCGAGGATCAGAGATTTTGAGTTTCAAGATTTTTTTGACCTACTTTACAAGAATGAAGAACTATTTCCATGTCCGGATGTTATTCAAAATGTGCCGAAAAGTGATGACCTCGATTCTCAAAAATCTCAAAATTGGCTTGTCCAAAACACTCAACCCATCTTGAATTGCTTCAAAAATCTGAAAAAAGATTCCACAAATTTTCGGAAAATCGAATCCAATATTGATCATTTTTTGGCACTAAACACCCTGCTTGATACCTTCCAAACTCTCGAAAAACTYCAAATTCAATCATCGAATTTTTCGAAAATCCTTGAAAAAATGTTCAAGATAACTAAGCCGTTATGGTCCATTGACAAGAAAAATGGGATATTCTTCCAACAAGCCGTCGAAAGTTTAAATTCAATGTTTCCAATCGCTTCGCATTCGGAAATCGTTCTCACTTTGGGATTTCCTGAAAAAGGGGATATGGCAAAAGTGGTGGATGATTTGAAGAGTGAATGGTTTAATCAGAAAGTGGCGCGAGGCAAAAGTGTCGATGTGTTGAGAACCGAGTTGGCTGGATTTTTTAAGGTAGGGCCCTTTTTTAAATTTCCAAAATATTGACTTTAAAGCGAGTTACGACCATTTTAGTATGATGGCCTAGAAAACCAAATCTTGGGGATCTAGGCCATAGTGCACATAATCAAAGAGCAAGTTCTGATAGTCTCATATCAGTTTTGAGAATTCGAAAATATCGATTTTGAAGCGAGTTACACACATTTTAGTTTGGTGGCCTAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCTCAAAATTGGCTTGTC</pcr_primer_p1>
		<pcr_primer_p2>AAGAATATCCCATTTTTCTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AAATCTCAAAATTGGCTTGTCCAAAACACTCAACCCATCTTGAATTGCTTCAAAAATCTGAAAAAAGATTCCACAAATTTTCGGAAAATCGAATCCAATATTGATCATTTTTTGGCACTAAACACCCTGCTTGATACCTTCCAAACTCTCGAAAAACTCCAAATTCAATCATCGAATTTTTCGAAAATCCTTGAAAAAATGTTCAAGATAACTAAGCCGTTATGGTCCATTGACAAGAAAAATGGGATATTCTT</canonical_amplicon>
		<polymorphic_amplicon>AAATCTCAAAATTGGCTTGTCCAAAACACTCAACCCATCTTGAATTGCTTCAAAAATCTGAAAAAAGATTCCACAAATTTTCGGAAAATCGAATCCAATATTGATCATTTTTTGGCACTAAACACCCTGCTTGATACCTTCCAAACTCTCGAAAAACTYCAAATTCAATCATCGAATTTTTCGAAAATCCTTGAAAAAATGTTCAAGATAACTAAGCCGTTATGGTCCATTGACAAGAAAAATGGGATATTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22716</snp_id>
        <super_contig>c013701045.Contig1</super_contig>
        <contig_pos>86043</contig_pos>
        <strand>+</strand>
        <context>GTGCCGAAAA[A/G]TGATGACCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATGAAGAACTATTTCCATGTCCGGATGTTATTCAAAATGTGCCGAAAA</left_flank>
        <right_flank>TGATGACCTCGATTCTCAAAAATCTCAAAATTGGCTTGTCCAAAACACTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTATATCTCAAGAAGTATAAAAGCTAGAAAAATGGTTTAAACTTGAAAATATAGCTTTAAAAAATGTGTATTTAATTTTCACAAAATTTTTAGCTTCCGACCTCCAAATCGTTTACGACGAGCTCGCCACCTTGACTCGTATCACCAACGCCATCACACTGCAGTCCGCAGCTCTAAAGAAGTCAGTTAAAGTTCGTGACGTCATCACAGAACTTCTGAAGGTGGACCCACAGAATTTCACAAATTTAATAAATTATATACCGGAAGCTTTATCAGCATCAATCCAAAGATTGAAGGATAAAACTGTAGATTTGGCGAACTTGGTACCAAACGATTGGAAAATTCTGGAATCTGGAAGGGAGTGGTTGAGTACTGTAAAAGAGGGATATGATAGTGCTTCGAGGATCAGAGATTTTGAGTTTCAAGATTTTTTTGACCTACTTTACAAGAATGAAGAACTATTTCCATGTCCGGATGTTATTCAAAATGTGCCGAAAAGTGATGACCTCGATTCTCAAAAATCTCAAAATTGGCTTGTCCAAAACACTCAACCCATCTTGAATTGCTTCAAAAATCTGAAAAAAGATTCCACAAATTTTCGGAAAATCGAATCCAATATTGATCATTTTTTGGCACTAAACACCCTGCTTGATACCTTCCAAACTCTCGAAAAACTCCAAATTCAATCATCGAATTTTTCGAAAATCCTTGAAAAAATGTTCAAGATAACTAAGCCGTTATGGTCCATTGACAAGAAAAATGGGATATTCTTCCAACAAGCCGTCGAAAGTTTAAATTCAATGTTTCCAATCGCTTCGCATTCGGAAATCGTTCTCACTTTGGGATTTCCTGAAAAAGGGGATATGGCAAAAGTGGTGGATGATTTGAAGAGTGAATGGTTTAATCAGAAAGTGGCGCGAGGCAAAAGTGTCGATGTGTTGAGAACCGAGTTGGCTGGATTTTTTAAGGTAGGGCCCTTTTTTAAATTTCCAAAATATT</canonical>
            <polymorphic>GTTATATCTCAAGAAGTATAAAAGCTAGAAAAATGGTTTAAACTTGAAAATATAGCTTTAAAAAATGTGTATTTAATTTTCACAAAATTTTTAGCTTCCGACCTCCAAATCGTTTACGACGAGCTCGCCACCTTGACTCGTATCACCAACGCCATCACACTGCAGTCCGCAGCTCTAAAGAAGTCAGTTAAAGTTCGTGACGTCATCACAGAACTTCTGAAGGTGGACCCACAGAATTTCACAAATTTAATAAATTATATACCGGAAGCTTTATCAGCATCAATCCAAAGATTGAAGGATAAAACTGTAGATTTGGCGAACTTGGTACCAAACGATTGGAAAATTCTGGAATCTGGAAGGGAGTGGTTGAGTACTGTAAAAGAGGGATATGATAGTGCTTCGAGGATCAGAGATTTTGAGTTTCAAGATTTTTTTGACCTACTTTACAAGAATGAAGAACTATTTCCATGTCCGGATGTTATTCAAAATGTGCCGAAAARTGATGACCTCGATTCTCAAAAATCTCAAAATTGGCTTGTCCAAAACACTCAACCCATCTTGAATTGCTTCAAAAATCTGAAAAAAGATTCCACAAATTTTCGGAAAATCGAATCCAATATTGATCATTTTTTGGCACTAAACACCCTGCTTGATACCTTCCAAACTCTCGAAAAACTCCAAATTCAATCATCGAATTTTTCGAAAATCCTTGAAAAAATGTTCAAGATAACTAAGCCGTTATGGTCCATTGACAAGAAAAATGGGATATTCTTCCAACAAGCCGTCGAAAGTTTAAATTCAATGTTTCCAATCGCTTCGCATTCGGAAATCGTTCTCACTTTGGGATTTCCTGAAAAAGGGGATATGGCAAAAGTGGTGGATGATTTGAAGAGTGAATGGTTTAATCAGAAAGTGGCGCGAGGCAAAAGTGTCGATGTGTTGAGAACCGAGTTGGCTGGATTTTTTAAGGTAGGGCCCTTTTTTAAATTTCCAAAATATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>195 124 95 69 61 48 45 45 44 40 38 32 20 17 16 16 15 13 12 10 10 9 8 7 6 3 2</canonical_bands>
                <polymorphic_bands>195 124 95 69 61 55 48 45 44 40 38 32 20 17 16 16 15 13 12 10 9 8 7 6 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCAGAGATTTTGAGTTTCAAG</pcr_primer_p1>
		<pcr_primer_p2>TATCAAGCAGGGTGTTTAGTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GATCAGAGATTTTGAGTTTCAAGATTTTTTTGACCTACTTTACAAGAATGAAGAACTATTTCCATGTCCGGATGTTATTCAAAATGTGCCGAAAAGTGATGACCTCGATTCTCAAAAATCTCAAAATTGGCTTGTCCAAAACACTCAACCCATCTTGAATTGCTTCAAAAATCTGAAAAAAGATTCCACAAATTTTCGGAAAATCGAATCCAATATTGATCATTTTTTGGCACTAAACACCCTGCTTGATA</canonical_amplicon>
		<polymorphic_amplicon>GATCAGAGATTTTGAGTTTCAAGATTTTTTTGACCTACTTTACAAGAATGAAGAACTATTTCCATGTCCGGATGTTATTCAAAATGTGCCGAAAARTGATGACCTCGATTCTCAAAAATCTCAAAATTGGCTTGTCCAAAACACTCAACCCATCTTGAATTGCTTCAAAAATCTGAAAAAAGATTCCACAAATTTTCGGAAAATCGAATCCAATATTGATCATTTTTTGGCACTAAACACCCTGCTTGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22717</snp_id>
        <super_contig>c013801131.Contig1</super_contig>
        <contig_pos>11297</contig_pos>
        <strand>+</strand>
        <context>ACAGAAACTT[C/T]TGATTCCATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAATCTTATTTCAGTAAGACCTCTCAAAAATGAACGATACAGAAACTT</left_flank>
        <right_flank>TGATTCCATCGATTCATTTGGAATTTCGTCCGTTATTCTTATTTACTCTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATGACTTTTCGAATAGACTTGACCCACTTTTTCTGAAAAATTATAAAAAGTTTTGCCATTCTGCTATAATTGCGCATGGGCCGCTTATATTATCCGTTTTGTGCTAGTCCGGGGAAGGGACATTTTTTGCCACCAATATCTAAGAAAAAGCGAGAGGACACTTCGGGTACTTCCCTTGTGAGAACAAAGAAGAAAAATAAAAGCCCATGGAATTCTATAGAGGAAATACGGTAGTTTATACCATGATTCTATCCAATCAACGATCAATGATTTGATCAAATTCAAATCATTCAATAAACATGTGTGCTCAATTTCACCTGTTCTTTACATTGTCAAGAGTTACTTTCTATGAAACGTGCCCAGCAAAAAAAAAATCAGCAGATGATTTTGATCTTCGAGTACTCAAAACAACACAATTCTACCTCAAAAAGCTCAACGAGCAATTCTTAAAATCTTATTTCAGTAAGACCTCTCAAAAATGAACGATACAGAAACTTCTGATTCCATCGATTCATTTGGAATTTCGTCCGTTATTCTTATTTACTCTGTCGTCTCAATGTTTGCTCTTCTCATTCTGATTTTCCCATTCTACGTGGTTGTAATTAGAGCGAATCGGAAAAAAGACAAATTGCTAACTGTATACCCAATCATCAGTCATTTCTATAAGGCTATCCGTTTTTTCTATTCAATTCTTTTCATCTTTATAATATATGTGATTTATCGTTGCTACGCTTATCCTGATATAGGGTACCTTTTTTTTTAAGTTGTAAAGGTTCAAAAAACAATTACAGGTATATAGAAACTCTACAACTTACCTCAATAATTGGAACTCTTTCCCTTATGGCAATTTTCGTACAAGCTCATAATTTTTTAATTATTCTTTTGTCTTTTCAACGATTTTACATATTCTTTTATCAGAAAGAACGCTCTAGGAACACTGGAAAGTATATTGAGCTGAATGCTGTAAAGATTTATCTGTTGTTTTACATCCTTCATAT</canonical>
            <polymorphic>TTATGACTTTTCGAATAGACTTGACCCACTTTTTCTGAAAAATTATAAAAAGTTTTGCCATTCTGCTATAATTGCGCATGGGCCGCTTATATTATCCGTTTTGTGCTAGTCCGGGGAAGGGACATTTTTTGCCACCAATATCTAAGAAAAAGCGAGAGGACACTTCGGGTACTTCCCTTGTGAGAACAAAGAAGAAAAATAAAAGCCCATGGAATTCTATAGAGGAAATACGGTAGTTTATACCATGATTCTATCCAATCAACGATCAATGATTTGATCAAATTCAAATCATTCAATAAACATGTGTGCTCAATTTCACCTGTTCTTTACATTGTCAAGAGTTACTTTCTATGAAACGTGCCCAGCAAAAAAAAAATCAGCAGATGATTTTGATCTTCGAGTACTCAAAACAACACAATTCTACCTCAAAAAGCTCAACGAGCAATTCTTAAAATCTTATTTCAGTAAGACCTCTCAAAAATGAACGATACAGAAACTTYTGATTCCATCGATTCATTTGGAATTTCGTCCGTTATTCTTATTTACTCTGTCGTCTCAATGTTTGCTCTTCTCATTCTGATTTTCCCATTCTACGTGGTTGTAATTAGAGCGAATCGGAAAAAAGACAAATTGCTAACTGTATACCCAATCATCAGTCATTTCTATAAGGCTATCCGTTTTTTCTATTCAATTCTTTTCATCTTTATAATATATGTGATTTATCGTTGCTACGCTTATCCTGATATAGGGTACCTTTTTTTTTAAGTTGTAAAGGTTCAAAAAACAATTACAGGTATATAGAAACTCTACAACTTACCTCAATAATTGGAACTCTTTCCCTTATGGCAATTTTCGTACAAGCTCATAATTTTTTAATTATTCTTTTGTCTTTTCAACGATTTTACATATTCTTTTATCAGAAAGAACGCTCTAGGAACACTGGAAAGTATATTGAGCTGAATGCTGTAAAGATTTATCTGTTGTTTTACATCCTTCATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>465 302 81 77 39 36</canonical_bands>
                <polymorphic_bands>542 302 81 39 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACACAATTCTACCTCAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>ATGACTGATGATTGGGTATACAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAACACAATTCTACCTCAAAAAGCTCAACGAGCAATTCTTAAAATCTTATTTCAGTAAGACCTCTCAAAAATGAACGATACAGAAACTTCTGATTCCATCGATTCATTTGGAATTTCGTCCGTTATTCTTATTTACTCTGTCGTCTCAATGTTTGCTCTTCTCATTCTGATTTTCCCATTCTACGTGGTTGTAATTAGAGCGAATCGGAAAAAAGACAAATTGCTAACTGTATACCCAATCATCAGTCAT</canonical_amplicon>
		<polymorphic_amplicon>CAACACAATTCTACCTCAAAAAGCTCAACGAGCAATTCTTAAAATCTTATTTCAGTAAGACCTCTCAAAAATGAACGATACAGAAACTTYTGATTCCATCGATTCATTTGGAATTTCGTCCGTTATTCTTATTTACTCTGTCGTCTCAATGTTTGCTCTTCTCATTCTGATTTTCCCATTCTACGTGGTTGTAATTAGAGCGAATCGGAAAAAAGACAAATTGCTAACTGTATACCCAATCATCAGTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22718</snp_id>
        <super_contig>c013801131.Contig1</super_contig>
        <contig_pos>11421</contig_pos>
        <strand>+</strand>
        <context>ATCGGAAAAA[A/T]GACAAATTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTCTGATTTTCCCATTCTACGTGGTTGTAATTAGAGCGAATCGGAAAAA</left_flank>
        <right_flank>GACAAATTGCTAACTGTATACCCAATCATCAGTCATTTCTATAAGGCTAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTGCCACCAATATCTAAGAAAAAGCGAGAGGACACTTCGGGTACTTCCCTTGTGAGAACAAAGAAGAAAAATAAAAGCCCATGGAATTCTATAGAGGAAATACGGTAGTTTATACCATGATTCTATCCAATCAACGATCAATGATTTGATCAAATTCAAATCATTCAATAAACATGTGTGCTCAATTTCACCTGTTCTTTACATTGTCAAGAGTTACTTTCTATGAAACGTGCCCAGCAAAAAAAAAATCAGCAGATGATTTTGATCTTCGAGTACTCAAAACAACACAATTCTACCTCAAAAAGCTCAACGAGCAATTCTTAAAATCTTATTTCAGTAAGACCTCTCAAAAATGAACGATACAGAAACTTCTGATTCCATCGATTCATTTGGAATTTCGTCCGTTATTCTTATTTACTCTGTCGTCTCAATGTTTGCTCTTCTCATTCTGATTTTCCCATTCTACGTGGTTGTAATTAGAGCGAATCGGAAAAAAGACAAATTGCTAACTGTATACCCAATCATCAGTCATTTCTATAAGGCTATCCGTTTTTTCTATTCAATTCTTTTCATCTTTATAATATATGTGATTTATCGTTGCTACGCTTATCCTGATATAGGGTACCTTTTTTTTTAAGTTGTAAAGGTTCAAAAAACAATTACAGGTATATAGAAACTCTACAACTTACCTCAATAATTGGAACTCTTTCCCTTATGGCAATTTTCGTACAAGCTCATAATTTTTTAATTATTCTTTTGTCTTTTCAACGATTTTACATATTCTTTTATCAGAAAGAACGCTCTAGGAACACTGGAAAGTATATTGAGCTGAATGCTGTAAAGATTTATCTGTTGTTTTACATCCTTCATATACTTTTTGTAATTTGGTATATACGGGAATTCACATCGAGGGATATCATGTTCTTGACTTACATGGTAAAGTTCTTGATTGATTGGCACCCTTTTTGTGAATTCATAATTCGCATATTTTAGATT</canonical>
            <polymorphic>TTTTTTGCCACCAATATCTAAGAAAAAGCGAGAGGACACTTCGGGTACTTCCCTTGTGAGAACAAAGAAGAAAAATAAAAGCCCATGGAATTCTATAGAGGAAATACGGTAGTTTATACCATGATTCTATCCAATCAACGATCAATGATTTGATCAAATTCAAATCATTCAATAAACATGTGTGCTCAATTTCACCTGTTCTTTACATTGTCAAGAGTTACTTTCTATGAAACGTGCCCAGCAAAAAAAAAATCAGCAGATGATTTTGATCTTCGAGTACTCAAAACAACACAATTCTACCTCAAAAAGCTCAACGAGCAATTCTTAAAATCTTATTTCAGTAAGACCTCTCAAAAATGAACGATACAGAAACTTCTGATTCCATCGATTCATTTGGAATTTCGTCCGTTATTCTTATTTACTCTGTCGTCTCAATGTTTGCTCTTCTCATTCTGATTTTCCCATTCTACGTGGTTGTAATTAGAGCGAATCGGAAAAAWGACAAATTGCTAACTGTATACCCAATCATCAGTCATTTCTATAAGGCTATCCGTTTTTTCTATTCAATTCTTTTCATCTTTATAATATATGTGATTTATCGTTGCTACGCTTATCCTGATATAGGGTACCTTTTTTTTTAAGTTGTAAAGGTTCAAAAAACAATTACAGGTATATAGAAACTCTACAACTTACCTCAATAATTGGAACTCTTTCCCTTATGGCAATTTTCGTACAAGCTCATAATTTTTTAATTATTCTTTTGTCTTTTCAACGATTTTACATATTCTTTTATCAGAAAGAACGCTCTAGGAACACTGGAAAGTATATTGAGCTGAATGCTGTAAAGATTTATCTGTTGTTTTACATCCTTCATATACTTTTTGTAATTTGGTATATACGGGAATTCACATCGAGGGATATCATGTTCTTGACTTACATGGTAAAGTTCTTGATTGATTGGCACCCTTTTTGTGAATTCATAATTCGCATATTTTAGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGAGCAATTCTTAAAATCTTATT</pcr_primer_p1>
		<pcr_primer_p2>AAAAACGGATAGCCTTATAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACGAGCAATTCTTAAAATCTTATTTCAGTAAGACCTCTCAAAAATGAACGATACAGAAACTTCTGATTCCATCGATTCATTTGGAATTTCGTCCGTTATTCTTATTTACTCTGTCGTCTCAATGTTTGCTCTTCTCATTCTGATTTTCCCATTCTACGTGGTTGTAATTAGAGCGAATCGGAAAAAAGACAAATTGCTAACTGTATACCCAATCATCAGTCATTTCTATAAGGCTATCCGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>ACGAGCAATTCTTAAAATCTTATTTCAGTAAGACCTCTCAAAAATGAACGATACAGAAACTTCTGATTCCATCGATTCATTTGGAATTTCGTCCGTTATTCTTATTTACTCTGTCGTCTCAATGTTTGCTCTTCTCATTCTGATTTTCCCATTCTACGTGGTTGTAATTAGAGCGAATCGGAAAAAWGACAAATTGCTAACTGTATACCCAATCATCAGTCATTTCTATAAGGCTATCCGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22719</snp_id>
        <super_contig>c013801131.Contig1</super_contig>
        <contig_pos>11529</contig_pos>
        <strand>+</strand>
        <context>ATCGTTGCTA[C/T]GCTTATCCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTATTCAATTCTTTTCATCTTTATAATATATGTGATTTATCGTTGCTA</left_flank>
        <right_flank>GCTTATCCTGATATAGGGTACCTTTTTTTTTAAGTTGTAAAGGTTCAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAGTTTATACCATGATTCTATCCAATCAACGATCAATGATTTGATCAAATTCAAATCATTCAATAAACATGTGTGCTCAATTTCACCTGTTCTTTACATTGTCAAGAGTTACTTTCTATGAAACGTGCCCAGCAAAAAAAAAATCAGCAGATGATTTTGATCTTCGAGTACTCAAAACAACACAATTCTACCTCAAAAAGCTCAACGAGCAATTCTTAAAATCTTATTTCAGTAAGACCTCTCAAAAATGAACGATACAGAAACTTCTGATTCCATCGATTCATTTGGAATTTCGTCCGTTATTCTTATTTACTCTGTCGTCTCAATGTTTGCTCTTCTCATTCTGATTTTCCCATTCTACGTGGTTGTAATTAGAGCGAATCGGAAAAAAGACAAATTGCTAACTGTATACCCAATCATCAGTCATTTCTATAAGGCTATCCGTTTTTTCTATTCAATTCTTTTCATCTTTATAATATATGTGATTTATCGTTGCTACGCTTATCCTGATATAGGGTACCTTTTTTTTTAAGTTGTAAAGGTTCAAAAAACAATTACAGGTATATAGAAACTCTACAACTTACCTCAATAATTGGAACTCTTTCCCTTATGGCAATTTTCGTACAAGCTCATAATTTTTTAATTATTCTTTTGTCTTTTCAACGATTTTACATATTCTTTTATCAGAAAGAACGCTCTAGGAACACTGGAAAGTATATTGAGCTGAATGCTGTAAAGATTTATCTGTTGTTTTACATCCTTCATATACTTTTTGTAATTTGGTATATACGGGAATTCACATCGAGGGATATCATGTTCTTGACTTACATGGTAAAGTTCTTGATTGATTGGCACCCTTTTTGTGAATTCATAATTCGCATATTTTAGATTTTCTACGGGTTTCTGAACTTTGTACTTTTATTATCTTCGTTTTTATATGTACCGATGGTTTTGAAAATTAGAAGGCTCACGAGTATTAGCTCTTCGAACCACCATGAA</canonical>
            <polymorphic>GTAGTTTATACCATGATTCTATCCAATCAACGATCAATGATTTGATCAAATTCAAATCATTCAATAAACATGTGTGCTCAATTTCACCTGTTCTTTACATTGTCAAGAGTTACTTTCTATGAAACGTGCCCAGCAAAAAAAAAATCAGCAGATGATTTTGATCTTCGAGTACTCAAAACAACACAATTCTACCTCAAAAAGCTCAACGAGCAATTCTTAAAATCTTATTTCAGTAAGACCTCTCAAAAATGAACGATACAGAAACTTCTGATTCCATCGATTCATTTGGAATTTCGTCCGTTATTCTTATTTACTCTGTCGTCTCAATGTTTGCTCTTCTCATTCTGATTTTCCCATTCTACGTGGTTGTAATTAGAGCGAATCGGAAAAAAGACAAATTGCTAACTGTATACCCAATCATCAGTCATTTCTATAAGGCTATCCGTTTTTTCTATTCAATTCTTTTCATCTTTATAATATATGTGATTTATCGTTGCTAYGCTTATCCTGATATAGGGTACCTTTTTTTTTAAGTTGTAAAGGTTCAAAAAACAATTACAGGTATATAGAAACTCTACAACTTACCTCAATAATTGGAACTCTTTCCCTTATGGCAATTTTCGTACAAGCTCATAATTTTTTAATTATTCTTTTGTCTTTTCAACGATTTTACATATTCTTTTATCAGAAAGAACGCTCTAGGAACACTGGAAAGTATATTGAGCTGAATGCTGTAAAGATTTATCTGTTGTTTTACATCCTTCATATACTTTTTGTAATTTGGTATATACGGGAATTCACATCGAGGGATATCATGTTCTTGACTTACATGGTAAAGTTCTTGATTGATTGGCACCCTTTTTGTGAATTCATAATTCGCATATTTTAGATTTTCTACGGGTTTCTGAACTTTGTACTTTTATTATCTTCGTTTTTATATGTACCGATGGTTTTGAAAATTAGAAGGCTCACGAGTATTAGCTCTTCGAACCACCATGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTATAAGGCTATCCGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTAAAATCGTTGAAAAGACAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTCTATAAGGCTATCCGTTTTTTCTATTCAATTCTTTTCATCTTTATAATATATGTGATTTATCGTTGCTACGCTTATCCTGATATAGGGTACCTTTTTTTTTAAGTTGTAAAGGTTCAAAAAACAATTACAGGTATATAGAAACTCTACAACTTACCTCAATAATTGGAACTCTTTCCCTTATGGCAATTTTCGTACAAGCTCATAATTTTTTAATTATTCTTTTGTCTTTTCAACGATTTTACAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTATAAGGCTATCCGTTTTTTCTATTCAATTCTTTTCATCTTTATAATATATGTGATTTATCGTTGCTAYGCTTATCCTGATATAGGGTACCTTTTTTTTTAAGTTGTAAAGGTTCAAAAAACAATTACAGGTATATAGAAACTCTACAACTTACCTCAATAATTGGAACTCTTTCCCTTATGGCAATTTTCGTACAAGCTCATAATTTTTTAATTATTCTTTTGTCTTTTCAACGATTTTACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22720</snp_id>
        <super_contig>c013801131.Contig1</super_contig>
        <contig_pos>11596</contig_pos>
        <strand></strand>
        <context>TACAGGTATA[T/A]AGAAACTCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GGTACCTTTTTTTTTAAGTTGTAAAGGTTCAAAAAACAATTACAGGTATA</left_flank>
        <right_flank>AGAAACTCTACAACTTACCTCAATAATTGGAACTCTTTCCCTTATGGCAA</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATGTGTGCTCAATTTCACCTGTTCTTTACATTGTCAAGAGTTACTTTCTATGAAACGTGCCCAGCAAAAAAAAAATCAGCAGATGATTTTGATCTTCGAGTACTCAAAACAACACAATTCTACCTCAAAAAGCTCAACGAGCAATTCTTAAAATCTTATTTCAGTAAGACCTCTCAAAAATGAACGATACAGAAACTTCTGATTCCATCGATTCATTTGGAATTTCGTCCGTTATTCTTATTTACTCTGTCGTCTCAATGTTTGCTCTTCTCATTCTGATTTTCCCATTCTACGTGGTTGTAATTAGAGCGAATCGGAAAAAAGACAAATTGCTAACTGTATACCCAATCATCAGTCATTTCTATAAGGCTATCCGTTTTTTCTATTCAATTCTTTTCATCTTTATAATATATGTGATTTATCGTTGCTACGCTTATCCTGATATAGGGTACCTTTTTTTTTAAGTTGTAAAGGTTCAAAAAACAATTACAGGTATATAGAAACTCTACAACTTACCTCAATAATTGGAACTCTTTCCCTTATGGCAATTTTCGTACAAGCTCATAATTTTTTAATTATTCTTTTGTCTTTTCAACGATTTTACATATTCTTTTATCAGAAAGAACGCTCTAGGAACACTGGAAAGTATATTGAGCTGAATGCTGTAAAGATTTATCTGTTGTTTTACATCCTTCATATACTTTTTGTAATTTGGTATATACGGGAATTCACATCGAGGGATATCATGTTCTTGACTTACATGGTAAAGTTCTTGATTGATTGGCACCCTTTTTGTGAATTCATAATTCGCATATTTTAGATTTTCTACGGGTTTCTGAACTTTGTACTTTTATTATCTTCGTTTTTATATGTACCGATGGTTTTGAAAATTAGAAGGCTCACGAGTATTAGCTCTTCGAACCACCATGAAAACCTCAAGTACATTTTCTATCAAACGTTGACAATTGTTTTATTTAAACTGGTGAGTATTGGGACCT</canonical>
            <polymorphic>ACATGTGTGCTCAATTTCACCTGTTCTTTACATTGTCAAGAGTTACTTTCTATGAAACGTGCCCAGCAAAAAAAAAATCAGCAGATGATTTTGATCTTCGAGTACTCAAAACAACACAATTCTACCTCAAAAAGCTCAACGAGCAATTCTTAAAATCTTATTTCAGTAAGACCTCTCAAAAATGAACGATACAGAAACTTCTGATTCCATCGATTCATTTGGAATTTCGTCCGTTATTCTTATTTACTCTGTCGTCTCAATGTTTGCTCTTCTCATTCTGATTTTCCCATTCTACGTGGTTGTAATTAGAGCGAATCGGAAAAAAGACAAATTGCTAACTGTATACCCAATCATCAGTCATTTCTATAAGGCTATCCGTTTTTTCTATTCAATTCTTTTCATCTTTATAATATATGTGATTTATCGTTGCTACGCTTATCCTGATATAGGGTACCTTTTTTTTTAAGTTGTAAAGGTTCAAAAAACAATTACAGGTATAWAGAAACTCTACAACTTACCTCAATAATTGGAACTCTTTCCCTTATGGCAATTTTCGTACAAGCTCATAATTTTTTAATTATTCTTTTGTCTTTTCAACGATTTTACATATTCTTTTATCAGAAAGAACGCTCTAGGAACACTGGAAAGTATATTGAGCTGAATGCTGTAAAGATTTATCTGTTGTTTTACATCCTTCATATACTTTTTGTAATTTGGTATATACGGGAATTCACATCGAGGGATATCATGTTCTTGACTTACATGGTAAAGTTCTTGATTGATTGGCACCCTTTTTGTGAATTCATAATTCGCATATTTTAGATTTTCTACGGGTTTCTGAACTTTGTACTTTTATTATCTTCGTTTTTATATGTACCGATGGTTTTGAAAATTAGAAGGCTCACGAGTATTAGCTCTTCGAACCACCATGAAAACCTCAAGTACATTTTCTATCAAACGTTGACAATTGTTTTATTTAAACTGGTGAGTATTGGGACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTATAAGGCTATCCGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTAAAATCGTTGAAAAGACAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTCTATAAGGCTATCCGTTTTTTCTATTCAATTCTTTTCATCTTTATAATATATGTGATTTATCGTTGCTACGCTTATCCTGATATAGGGTACCTTTTTTTTTAAGTTGTAAAGGTTCAAAAAACAATTACAGGTATATAGAAACTCTACAACTTACCTCAATAATTGGAACTCTTTCCCTTATGGCAATTTTCGTACAAGCTCATAATTTTTTAATTATTCTTTTGTCTTTTCAACGATTTTACAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTATAAGGCTATCCGTTTTTTCTATTCAATTCTTTTCATCTTTATAATATATGTGATTTATCGTTGCTACGCTTATCCTGATATAGGGTACCTTTTTTTTTAAGTTGTAAAGGTTCAAAAAACAATTACAGGTATAWAGAAACTCTACAACTTACCTCAATAATTGGAACTCTTTCCCTTATGGCAATTTTCGTACAAGCTCATAATTTTTTAATTATTCTTTTGTCTTTTCAACGATTTTACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22721</snp_id>
        <super_contig>c013801131.Contig1</super_contig>
        <contig_pos>13716</contig_pos>
        <strand></strand>
        <context>TGAAATWAAA[C/A]AAGAGTAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GACGTAAAATGGAGAACGCGACCACTGAAATTTGGTTTTTTGAAATTAAA</left_flank>
        <right_flank>AAGAGTAGAATAGCGTAATAGAGTCTACTGACATTCAAGTCTGTGGGGCT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAAAGGCAAGTTATGACACTACTTATTCCGGTAAGTGTGCATAAACCCCCAAAGATTACAGATAGGTAATACGGAATGTAAATTTCCCATTTTCTCGGATCCGCTATGAACATTTCCGGACAAAAGCATACGGTTTTGTTGAAGTACTGAAAAAATTGAAAATTAAGGAGTTACGGTACGTACTCAAGGCTGTATGAAATCACGAGCCGCCGCGGCGCGACTAGCCTGAGCCGACCGCGGTCGGCCGAAAACATTGAGTAACCTGATAAGCTTCCTGACGAAACCCAGTTGATTCCAATTCAATAGAAAGTGTGGGAAGGATTGAAACAGCTACAATGAGCATCATTAGATAACAGAAACGATATGCCCATTTTAGAATTTTCACAGGGAGCTCGAATTTTTTGGTGTATCTCAAATCGGACAAAGTGATGAGTTGATGTTTGAACAGACGTAAAATGGAGAACGCGACCACTGAAATTTGGTTTTTTGAAATTAAACAAGAGTAGAATAGCGTAATAGAGTCTACTGACATTCAAGTCTGTGGGGCTAGGACAAATGCTAAAAAGAAAAAGAAAAAGAAGATAAAAATAGACTAACAGAGCACGACATGTGTCATTAAAACCAGCGGAAGTGCAATATTCGCGTCCAGGTCGTCTAGGAAACCAGTCATGAAATATCCGGGAATCGGTGGCATCAGAATTGGGCAGATGATGTGACACAAGAGGACCACAGAGGAGAAGTTTCTGGAAATTCAAAAAAAATGTTGAAGAACGTGAGAGAGGAGATTTTTTAAAGTTGTTTTTTGAAAAACCTAGTAAAACTTGAATTTACAGAAAAATTAAAGTATGGGTAATTTGAAATTTCTGAAAATTCCAGAAACTGTTGTTTTTTCCTAACTTTATCTGTTGCATTTTTTTTTCATTTTTAACTTCAAATTCAATTTCTACCTGACATTTCCTGTCCGACTACCGTAAAACCTGTAATAGAAGAGCCGCATA</canonical>
            <polymorphic>TCCAAAGGCAAGTTATGACACTACTTATTCCGGTAAGTGTGCATAAACCCCCAAAGATTACAGATAGGTAATACGGAATGTAAATTTCCCATTTTCTCGGATCCGCTATGAACATTTCCGGACAAAAGCATACGGTTTTGTTGAAGTACTGAAAAAATTGAAAATTAAGGAGTTACGGTACGTACTCAAGGCTGTATGAAATCACGAGCCGCCGCGGCGCGACTAGCCTGAGCCGACCGCGGTCGGCCGAAAACATTGAGTAACCTGATAAGCTTCCTGACGAAACCCAGTTGATTCCAATTCAATAGAAAGTGTGGGAAGGATTGAAACAGCTACAATGAGCATCATTAGATAACAGAAACGATATGCCCATTTTAGAATTTTCACAGGGAGCTCGAATTTTTTGGTGTATCTCAAATCGGACAAAGTGATGAGTTGATGTTTGAACAGACGTAAAATGGAGAACGCGACCACTGAAATTTGGTTTTTTGAAATTAAAMAAGAGTAGAATAGCGTAATAGAGTCTACTGACATTCAAGTCTGTGGGGCTAGGACAAATGCTAAAAAGAAAAAGAAAAAGAAGATAAAAATAGACTAACAGAGCACGACATGTGTCATTAAAACCAGCGGAAGTGCAATATTCGCGTCCAGGTCGTCTAGGAAACCAGTCATGAAATATCCGGGAATCGGTGGCATCAGAATTGGGCAGATGATGTGACACAAGAGGACCACAGAGGAGAAGTTTCTGGAAATTCAAAAAAAATGTTGAAGAACGTGAGAGAGGAGATTTTTTAAAGTTGTTTTTTGAAAAACCTAGTAAAACTTGAATTTACAGAAAAATTAAAGTATGGGTAATTTGAAATTTCTGAAAATTCCAGAAACTGTTGTTTTTTCCTAACTTTATCTGTTGCATTTTTTTTTCATTTTTAACTTCAAATTCAATTTCTACCTGACATTTCCTGTCCGACTACCGTAAAACCTGTAATAGAAGAGCCGCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGAGTTGATGTTTGAACAGA</pcr_primer_p1>
		<pcr_primer_p2>TATTTCATGACTGGTTTCCTAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATGAGTTGATGTTTGAACAGACGTAAAATGGAGAACGCGACCACTGAAATTTGGTTTTTTGAAATTAAACAAGAGTAGAATAGCGTAATAGAGTCTACTGACATTCAAGTCTGTGGGGCTAGGACAAATGCTAAAAAGAAAAAGAAAAAGAAGATAAAAATAGACTAACAGAGCACGACATGTGTCATTAAAACCAGCGGAAGTGCAATATTCGCGTCCAGGTCGTCTAGGAAACCAGTCATGAAATA</canonical_amplicon>
		<polymorphic_amplicon>GATGAGTTGATGTTTGAACAGACGTAAAATGGAGAACGCGACCACTGAAATTTGGTTTTTTGAAATTAAAMAAGAGTAGAATAGCGTAATAGAGTCTACTGACATTCAAGTCTGTGGGGCTAGGACAAATGCTAAAAAGAAAAAGAAAAAGAAGATAAAAATAGACTAACAGAGCACGACATGTGTCATTAAAACCAGCGGAAGTGCAATATTCGCGTCCAGGTCGTCTAGGAAACCAGTCATGAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22722</snp_id>
        <super_contig>c013801131.Contig1</super_contig>
        <contig_pos>13528</contig_pos>
        <strand>+</strand>
        <context>TCAATAGAAA[G/T]TGTGGGAAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACCTGATAAGCTTCCTGACGAAACCCAGTTGATTCCAATTCAATAGAAA</left_flank>
        <right_flank>TGTGGGAAGGATTGAAACAGCTACAATGAGCATCATTAGATAACAGAAAC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGTGTAGAACAGTGTGGAAACCGATGCAAGTGGAAAGATGACAAAAACAATGCATATAAAAGCCTGCAAAAAAGTATGACGCCTTATTTTATAAGTGTTATATACCTGATAAACAAGAATAAATGTGAAATTTCTTTGCATAACCAGAGTGTCTCTAGACACAATTTTCCGGGAATCAAACATCATCCAAAGGCAAGTTATGACACTACTTATTCCGGTAAGTGTGCATAAACCCCCAAAGATTACAGATAGGTAATACGGAATGTAAATTTCCCATTTTCTCGGATCCGCTATGAACATTTCCGGACAAAAGCATACGGTTTTGTTGAAGTACTGAAAAAATTGAAAATTAAGGAGTTACGGTACGTACTCAAGGCTGTATGAAATCACGAGCCGCCGCGGCGCGACTAGCCTGAGCCGACCGCGGTCGGCCGAAAACATTGAGTAACCTGATAAGCTTCCTGACGAAACCCAGTTGATTCCAATTCAATAGAAAGTGTGGGAAGGATTGAAACAGCTACAATGAGCATCATTAGATAACAGAAACGATATGCCCATTTTAGAATTTTCACAGGGAGCTCGAATTTTTTGGTGTATCTCAAATCGGACAAAGTGATGAGTTGATGTTTGAACAGACGTAAAATGGAGAACGCGACCACTGAAATTTGGTTTTTTGAAATTAAACAAGAGTAGAATAGCGTAATAGAGTCTACTGACATTCAAGTCTGTGGGGCTAGGACAAATGCTAAAAAGAAAAAGAAAAAGAAGATAAAAATAGACTAACAGAGCACGACATGTGTCATTAAAACCAGCGGAAGTGCAATATTCGCGTCCAGGTCGTCTAGGAAACCAGTCATGAAATATCCGGGAATCGGTGGCATCAGAATTGGGCAGATGATGTGACACAAGAGGACCACAGAGGAGAAGTTTCTGGAAATTCAAAAAAAATGTTGAAGAACGTGAGAGAGGAGATTTTTTAAAGTTGTTTTTTGAAAAA</canonical>
            <polymorphic>TTTCGTGTAGAACAGTGTGGAAACCGATGCAAGTGGAAAGATGACAAAAACAATGCATATAAAAGCCTGCAAAAAAGTATGACGCCTTATTTTATAAGTGTTATATACCTGATAAACAAGAATAAATGTGAAATTTCTTTGCATAACCAGAGTGTCTCTAGACACAATTTTCCGGGAATCAAACATCATCCAAAGGCAAGTTATGACACTACTTATTCCGGTAAGTGTGCATAAACCCCCAAAGATTACAGATAGGTAATACGGAATGTAAATTTCCCATTTTCTCGGATCCGCTATGAACATTTCCGGACAAAAGCATACGGTTTTGTTGAAGTACTGAAAAAATTGAAAATTAAGGAGTTACGGTACGTACTCAAGGCTGTATGAAATCACGAGCCGCCGCGGCGCGACTAGCCTGAGCCGACCGCGGTCGGCCGAAAACATTGAGTAACCTGATAAGCTTCCTGACGAAACCCAGTTGATTCCAATTCAATAGAAAKTGTGGGAAGGATTGAAACAGCTACAATGAGCATCATTAGATAACAGAAACGATATGCCCATTTTAGAATTTTCACAGGGAGCTCGAATTTTTTGGTGTATCTCAAATCGGACAAAGTGATGAGTTGATGTTTGAACAGACGTAAAATGGAGAACGCGACCACTGAAATTTGGTTTTTTGAAATTAAACAAGAGTAGAATAGCGTAATAGAGTCTACTGACATTCAAGTCTGTGGGGCTAGGACAAATGCTAAAAAGAAAAAGAAAAAGAAGATAAAAATAGACTAACAGAGCACGACATGTGTCATTAAAACCAGCGGAAGTGCAATATTCGCGTCCAGGTCGTCTAGGAAACCAGTCATGAAATATCCGGGAATCGGTGGCATCAGAATTGGGCAGATGATGTGACACAAGAGGACCACAGAGGAGAAGTTTCTGGAAATTCAAAAAAAATGTTGAAGAACGTGAGAGAGGAGATTTTTTAAAGTTGTTTTTTGAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>163 110 72 70 65 60 57 46 44 43 35 30 25 24 23 21 21 19 16 11 10 10 9 7 3 2 2 2</canonical_bands>
                <polymorphic_bands>163 112 72 70 65 60 57 46 44 43 35 30 25 24 23 21 21 19 16 11 10 10 9 7 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTACGTACTCAAGGCTGTATGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTGTCCGATTTGAGATACAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTACGTACTCAAGGCTGTATGAAATCACGAGCCGCCGCGGCGCGACTAGCCTGAGCCGACCGCGGTCGGCCGAAAACATTGAGTAACCTGATAAGCTTCCTGACGAAACCCAGTTGATTCCAATTCAATAGAAAGTGTGGGAAGGATTGAAACAGCTACAATGAGCATCATTAGATAACAGAAACGATATGCCCATTTTAGAATTTTCACAGGGAGCTCGAATTTTTTGGTGTATCTCAAATCGGACAAA</canonical_amplicon>
		<polymorphic_amplicon>GTACGTACTCAAGGCTGTATGAAATCACGAGCCGCCGCGGCGCGACTAGCCTGAGCCGACCGCGGTCGGCCGAAAACATTGAGTAACCTGATAAGCTTCCTGACGAAACCCAGTTGATTCCAATTCAATAGAAAKTGTGGGAAGGATTGAAACAGCTACAATGAGCATCATTAGATAACAGAAACGATATGCCCATTTTAGAATTTTCACAGGGAGCTCGAATTTTTTGGTGTATCTCAAATCGGACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22723</snp_id>
        <super_contig>c013801131.Contig1</super_contig>
        <contig_pos>13459</contig_pos>
        <strand>+</strand>
        <context>CCGACCGCGG[C/T]CGGCCGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTATGAAATCACGAGCCGCCGCGGCGCGACTAGCCTGAGCCGACCGCGG</left_flank>
        <right_flank>CGGCCGAAAACATTGAGTAACCTGATAAGCTTCCTGACGAAACCCAGTTG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTCCGTGTTCTGTAATATGAAATTGACACATTTCAATTTCATGGTCCTTCACAACCTGAAATAAAAATTTTCGTGTAGAACAGTGTGGAAACCGATGCAAGTGGAAAGATGACAAAAACAATGCATATAAAAGCCTGCAAAAAAGTATGACGCCTTATTTTATAAGTGTTATATACCTGATAAACAAGAATAAATGTGAAATTTCTTTGCATAACCAGAGTGTCTCTAGACACAATTTTCCGGGAATCAAACATCATCCAAAGGCAAGTTATGACACTACTTATTCCGGTAAGTGTGCATAAACCCCCAAAGATTACAGATAGGTAATACGGAATGTAAATTTCCCATTTTCTCGGATCCGCTATGAACATTTCCGGACAAAAGCATACGGTTTTGTTGAAGTACTGAAAAAATTGAAAATTAAGGAGTTACGGTACGTACTCAAGGCTGTATGAAATCACGAGCCGCCGCGGCGCGACTAGCCTGAGCCGACCGCGGTCGGCCGAAAACATTGAGTAACCTGATAAGCTTCCTGACGAAACCCAGTTGATTCCAATTCAATAGAAAGTGTGGGAAGGATTGAAACAGCTACAATGAGCATCATTAGATAACAGAAACGATATGCCCATTTTAGAATTTTCACAGGGAGCTCGAATTTTTTGGTGTATCTCAAATCGGACAAAGTGATGAGTTGATGTTTGAACAGACGTAAAATGGAGAACGCGACCACTGAAATTTGGTTTTTTGAAATTAAACAAGAGTAGAATAGCGTAATAGAGTCTACTGACATTCAAGTCTGTGGGGCTAGGACAAATGCTAAAAAGAAAAAGAAAAAGAAGATAAAAATAGACTAACAGAGCACGACATGTGTCATTAAAACCAGCGGAAGTGCAATATTCGCGTCCAGGTCGTCTAGGAAACCAGTCATGAAATATCCGGGAATCGGTGGCATCAGAATTGGGCAGATGATGTGACACAAGAGGACCACAGAGGAGAAGT</canonical>
            <polymorphic>AGTCCGTGTTCTGTAATATGAAATTGACACATTTCAATTTCATGGTCCTTCACAACCTGAAATAAAAATTTTCGTGTAGAACAGTGTGGAAACCGATGCAAGTGGAAAGATGACAAAAACAATGCATATAAAAGCCTGCAAAAAAGTATGACGCCTTATTTTATAAGTGTTATATACCTGATAAACAAGAATAAATGTGAAATTTCTTTGCATAACCAGAGTGTCTCTAGACACAATTTTCCGGGAATCAAACATCATCCAAAGGCAAGTTATGACACTACTTATTCCGGTAAGTGTGCATAAACCCCCAAAGATTACAGATAGGTAATACGGAATGTAAATTTCCCATTTTCTCGGATCCGCTATGAACATTTCCGGACAAAAGCATACGGTTTTGTTGAAGTACTGAAAAAATTGAAAATTAAGGAGTTACGGTACGTACTCAAGGCTGTATGAAATCACGAGCCGCCGCGGCGCGACTAGCCTGAGCCGACCGCGGYCGGCCGAAAACATTGAGTAACCTGATAAGCTTCCTGACGAAACCCAGTTGATTCCAATTCAATAGAAAGTGTGGGAAGGATTGAAACAGCTACAATGAGCATCATTAGATAACAGAAACGATATGCCCATTTTAGAATTTTCACAGGGAGCTCGAATTTTTTGGTGTATCTCAAATCGGACAAAGTGATGAGTTGATGTTTGAACAGACGTAAAATGGAGAACGCGACCACTGAAATTTGGTTTTTTGAAATTAAACAAGAGTAGAATAGCGTAATAGAGTCTACTGACATTCAAGTCTGTGGGGCTAGGACAAATGCTAAAAAGAAAAAGAAAAAGAAGATAAAAATAGACTAACAGAGCACGACATGTGTCATTAAAACCAGCGGAAGTGCAATATTCGCGTCCAGGTCGTCTAGGAAACCAGTCATGAAATATCCGGGAATCGGTGGCATCAGAATTGGGCAGATGATGTGACACAAGAGGACCACAGAGGAGAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNNGTC</site>
                <isoschizomers>
                    <enzyme>BoxI</enzyme>
                    <enzyme>BstPAI</enzyme>
                    <enzyme>PshAI</enzyme>
                </isoschizomers>
                <canonical_bands>496 372 132</canonical_bands>
                <polymorphic_bands>868 132</polymorphic_bands>
            </assay>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>500 494 6</canonical_bands>
                <polymorphic_bands>496 494 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTACGTACTCAAGGCTGTATGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTGTCCGATTTGAGATACAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTACGTACTCAAGGCTGTATGAAATCACGAGCCGCCGCGGCGCGACTAGCCTGAGCCGACCGCGGTCGGCCGAAAACATTGAGTAACCTGATAAGCTTCCTGACGAAACCCAGTTGATTCCAATTCAATAGAAAGTGTGGGAAGGATTGAAACAGCTACAATGAGCATCATTAGATAACAGAAACGATATGCCCATTTTAGAATTTTCACAGGGAGCTCGAATTTTTTGGTGTATCTCAAATCGGACAAA</canonical_amplicon>
		<polymorphic_amplicon>GTACGTACTCAAGGCTGTATGAAATCACGAGCCGCCGCGGCGCGACTAGCCTGAGCCGACCGCGGYCGGCCGAAAACATTGAGTAACCTGATAAGCTTCCTGACGAAACCCAGTTGATTCCAATTCAATAGAAAGTGTGGGAAGGATTGAAACAGCTACAATGAGCATCATTAGATAACAGAAACGATATGCCCATTTTAGAATTTTCACAGGGAGCTCGAATTTTTTGGTGTATCTCAAATCGGACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22724</snp_id>
        <super_contig>c013801131.Contig1</super_contig>
        <contig_pos>13438</contig_pos>
        <strand>+</strand>
        <context>CCGCGGCGCG[A/G]CTMGCCTGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTACGGTACGTACTCAAGGCTGTATGAAATCACGAGCCGCCGCGGCGCG</left_flank>
        <right_flank>CTAGCCTGAGCCGACCGCGGTCGGCCGAAAACATTGAGTAACCTGATAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATTAGCAGCAGATAATATAGTCCGTGTTCTGTAATATGAAATTGACACATTTCAATTTCATGGTCCTTCACAACCTGAAATAAAAATTTTCGTGTAGAACAGTGTGGAAACCGATGCAAGTGGAAAGATGACAAAAACAATGCATATAAAAGCCTGCAAAAAAGTATGACGCCTTATTTTATAAGTGTTATATACCTGATAAACAAGAATAAATGTGAAATTTCTTTGCATAACCAGAGTGTCTCTAGACACAATTTTCCGGGAATCAAACATCATCCAAAGGCAAGTTATGACACTACTTATTCCGGTAAGTGTGCATAAACCCCCAAAGATTACAGATAGGTAATACGGAATGTAAATTTCCCATTTTCTCGGATCCGCTATGAACATTTCCGGACAAAAGCATACGGTTTTGTTGAAGTACTGAAAAAATTGAAAATTAAGGAGTTACGGTACGTACTCAAGGCTGTATGAAATCACGAGCCGCCGCGGCGCGACTAGCCTGAGCCGACCGCGGTCGGCCGAAAACATTGAGTAACCTGATAAGCTTCCTGACGAAACCCAGTTGATTCCAATTCAATAGAAAGTGTGGGAAGGATTGAAACAGCTACAATGAGCATCATTAGATAACAGAAACGATATGCCCATTTTAGAATTTTCACAGGGAGCTCGAATTTTTTGGTGTATCTCAAATCGGACAAAGTGATGAGTTGATGTTTGAACAGACGTAAAATGGAGAACGCGACCACTGAAATTTGGTTTTTTGAAATTAAACAAGAGTAGAATAGCGTAATAGAGTCTACTGACATTCAAGTCTGTGGGGCTAGGACAAATGCTAAAAAGAAAAAGAAAAAGAAGATAAAAATAGACTAACAGAGCACGACATGTGTCATTAAAACCAGCGGAAGTGCAATATTCGCGTCCAGGTCGTCTAGGAAACCAGTCATGAAATATCCGGGAATCGGTGGCATCAGAATTGGGCAGATGATGTGACACA</canonical>
            <polymorphic>GAAATTAGCAGCAGATAATATAGTCCGTGTTCTGTAATATGAAATTGACACATTTCAATTTCATGGTCCTTCACAACCTGAAATAAAAATTTTCGTGTAGAACAGTGTGGAAACCGATGCAAGTGGAAAGATGACAAAAACAATGCATATAAAAGCCTGCAAAAAAGTATGACGCCTTATTTTATAAGTGTTATATACCTGATAAACAAGAATAAATGTGAAATTTCTTTGCATAACCAGAGTGTCTCTAGACACAATTTTCCGGGAATCAAACATCATCCAAAGGCAAGTTATGACACTACTTATTCCGGTAAGTGTGCATAAACCCCCAAAGATTACAGATAGGTAATACGGAATGTAAATTTCCCATTTTCTCGGATCCGCTATGAACATTTCCGGACAAAAGCATACGGTTTTGTTGAAGTACTGAAAAAATTGAAAATTAAGGAGTTACGGTACGTACTCAAGGCTGTATGAAATCACGAGCCGCCGCGGCGCGRCTAGCCTGAGCCGACCGCGGTCGGCCGAAAACATTGAGTAACCTGATAAGCTTCCTGACGAAACCCAGTTGATTCCAATTCAATAGAAAGTGTGGGAAGGATTGAAACAGCTACAATGAGCATCATTAGATAACAGAAACGATATGCCCATTTTAGAATTTTCACAGGGAGCTCGAATTTTTTGGTGTATCTCAAATCGGACAAAGTGATGAGTTGATGTTTGAACAGACGTAAAATGGAGAACGCGACCACTGAAATTTGGTTTTTTGAAATTAAACAAGAGTAGAATAGCGTAATAGAGTCTACTGACATTCAAGTCTGTGGGGCTAGGACAAATGCTAAAAAGAAAAAGAAAAAGAAGATAAAAATAGACTAACAGAGCACGACATGTGTCATTAAAACCAGCGGAAGTGCAATATTCGCGTCCAGGTCGTCTAGGAAACCAGTCATGAAATATCCGGGAATCGGTGGCATCAGAATTGGGCAGATGATGTGACACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTCCGGTAAGTGTGCATAA</pcr_primer_p1>
		<pcr_primer_p2>GAAGCTTATCAGGTTACTCAATG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATTCCGGTAAGTGTGCATAAACCCCCAAAGATTACAGATAGGTAATACGGAATGTAAATTTCCCATTTTCTCGGATCCGCTATGAACATTTCCGGACAAAAGCATACGGTTTTGTTGAAGTACTGAAAAAATTGAAAATTAAGGAGTTACGGTACGTACTCAAGGCTGTATGAAATCACGAGCCGCCGCGGCGCGACTAGCCTGAGCCGACCGCGGTCGGCCGAAAACATTGAGTAACCTGATAAGCTTC</canonical_amplicon>
		<polymorphic_amplicon>TATTCCGGTAAGTGTGCATAAACCCCCAAAGATTACAGATAGGTAATACGGAATGTAAATTTCCCATTTTCTCGGATCCGCTATGAACATTTCCGGACAAAAGCATACGGTTTTGTTGAAGTACTGAAAAAATTGAAAATTAAGGAGTTACGGTACGTACTCAAGGCTGTATGAAATCACGAGCCGCCGCGGCGCGRCTAGCCTGAGCCGACCGCGGTCGGCCGAAAACATTGAGTAACCTGATAAGCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22725</snp_id>
        <super_contig>c013801131.Contig1</super_contig>
        <contig_pos>27642</contig_pos>
        <strand>+</strand>
        <context>TGGGCATCTG[A/C]AATTAAAGCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTCCACCAATTTGACTTACAAGCATTAGCTTCATGGTTCTGGGCATCTG</left_flank>
        <right_flank>AATTAAAGCGACGTTCGAGGATACGGTATTAGACACCTACTCCACATCCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGCCACCACGTAAGAATAGCCTAAAACCCCCCAAATATCAGGTTACTTTCTAGGCCTCAAAAGTTGGTGTTCTGGGAAAACTCAACTTGCAAAAATTAGGCCACCAACCCAACAAGTGCCTTTTAGGTCTTTTTTTCGAGCTTTTCAAACTGCTCTAACTCACTCATCATGATACGAATCCGCAGCCATGTTATCATAGACACCATACAAAATATATGTAGTAATAATACTTCCGACGCACCCAGCGACAACTGTTATGGCTCCTGAAATAGATTCCTGGTACAAAAAACAATGATTATTAAACAAAACCTGCAGCAAAACTAAAATAGAGAGCAATGAGAACAATTGGAGCCAGAATGTACAATTGAGTATCCACGGCCAAGTACCAGGACACTCCATAGCAAGTTGTCATTTGATTCAAATCGTAGTTGTTGATGTACAGCAAGTTTCTCCACCAATTTGACTTACAAGCATTAGCTTCATGGTTCTGGGCATCTGAAATTAAAGCGACGTTCGAGGATACGGTATTAGACACCTACTCCACATCCACGCGTTATAGGGTCCTTGCACATAAGGACTATAGACTACAAAAAATCCGATGAACAGCATGTAAGGAGGCGTGAGACGGAGATAACGGTGTAGGTAGAATAGAATCCAGGTCAACGGACTTTTGATGACAGCTGGCTTGGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTTAAAAATAGGGGATTAACCTTAAAGAACAAGTAAGCCACTACAATTCCAGATAATAAGAAAAAAGTGTCAACGGAGAGGACGGCTTGAAGGAAGAGGTGATTCCAGATATGCTTACTCACAGAACTCAATGGGAGAAGGGCATCTGAATTAATGGGTGATTTTTTGTTACTCCAACTATTGGAGGACTTACCAGAAAACAAAAAGTACATGAGCGCGTGTCCAGCGACAACCCAGGACATGGAAAACGCGCGGATGCAGTCTAGGGACTTTATGA</canonical>
            <polymorphic>AGGCCACCACGTAAGAATAGCCTAAAACCCCCCAAATATCAGGTTACTTTCTAGGCCTCAAAAGTTGGTGTTCTGGGAAAACTCAACTTGCAAAAATTAGGCCACCAACCCAACAAGTGCCTTTTAGGTCTTTTTTTCGAGCTTTTCAAACTGCTCTAACTCACTCATCATGATACGAATCCGCAGCCATGTTATCATAGACACCATACAAAATATATGTAGTAATAATACTTCCGACGCACCCAGCGACAACTGTTATGGCTCCTGAAATAGATTCCTGGTACAAAAAACAATGATTATTAAACAAAACCTGCAGCAAAACTAAAATAGAGAGCAATGAGAACAATTGGAGCCAGAATGTACAATTGAGTATCCACGGCCAAGTACCAGGACACTCCATAGCAAGTTGTCATTTGATTCAAATCGTAGTTGTTGATGTACAGCAAGTTTCTCCACCAATTTGACTTACAAGCATTAGCTTCATGGTTCTGGGCATCTGMAATTAAAGCGACGTTCGAGGATACGGTATTAGACACCTACTCCACATCCACGCGTTATAGGGTCCTTGCACATAAGGACTATAGACTACAAAAAATCCGATGAACAGCATGTAAGGAGGCGTGAGACGGAGATAACGGTGTAGGTAGAATAGAATCCAGGTCAACGGACTTTTGATGACAGCTGGCTTGGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTTAAAAATAGGGGATTAACCTTAAAGAACAAGTAAGCCACTACAATTCCAGATAATAAGAAAAAAGTGTCAACGGAGAGGACGGCTTGAAGGAAGAGGTGATTCCAGATATGCTTACTCACAGAACTCAATGGGAGAAGGGCATCTGAATTAATGGGTGATTTTTTGTTACTCCAACTATTGGAGGACTTACCAGAAAACAAAAAGTACATGAGCGCGTGTCCAGCGACAACCCAGGACATGGAAAACGCGCGGATGCAGTCTAGGGACTTTATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>272 263 235 130 100</canonical_bands>
                <polymorphic_bands>363 272 235 130</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATAGAGAGCAATGAGAACAA</pcr_primer_p1>
		<pcr_primer_p2>TTATGTGCAAGGACCCTATAAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAAATAGAGAGCAATGAGAACAATTGGAGCCAGAATGTACAATTGAGTATCCACGGCCAAGTACCAGGACACTCCATAGCAAGTTGTCATTTGATTCAAATCGTAGTTGTTGATGTACAGCAAGTTTCTCCACCAATTTGACTTACAAGCATTAGCTTCATGGTTCTGGGCATCTGAAATTAAAGCGACGTTCGAGGATACGGTATTAGACACCTACTCCACATCCACGCGTTATAGGGTCCTTGCACATAA</canonical_amplicon>
		<polymorphic_amplicon>AAAATAGAGAGCAATGAGAACAATTGGAGCCAGAATGTACAATTGAGTATCCACGGCCAAGTACCAGGACACTCCATAGCAAGTTGTCATTTGATTCAAATCGTAGTTGTTGATGTACAGCAAGTTTCTCCACCAATTTGACTTACAAGCATTAGCTTCATGGTTCTGGGCATCTGMAATTAAAGCGACGTTCGAGGATACGGTATTAGACACCTACTCCACATCCACGCGTTATAGGGTCCTTGCACATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22726</snp_id>
        <super_contig>c013801131.Contig1</super_contig>
        <contig_pos>27655</contig_pos>
        <strand>+</strand>
        <context>TTAAAGCGAC[A/G]TTCGAGGATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACTTACAAGCATTAGCTTCATGGTTCTGGGCATCTGAAATTAAAGCGAC</left_flank>
        <right_flank>TTCGAGGATACGGTATTAGACACCTACTCCACATCCACGCGTTATAGGGT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAATAGCCTAAAACCCCCCAAATATCAGGTTACTTTCTAGGCCTCAAAAGTTGGTGTTCTGGGAAAACTCAACTTGCAAAAATTAGGCCACCAACCCAACAAGTGCCTTTTAGGTCTTTTTTTCGAGCTTTTCAAACTGCTCTAACTCACTCATCATGATACGAATCCGCAGCCATGTTATCATAGACACCATACAAAATATATGTAGTAATAATACTTCCGACGCACCCAGCGACAACTGTTATGGCTCCTGAAATAGATTCCTGGTACAAAAAACAATGATTATTAAACAAAACCTGCAGCAAAACTAAAATAGAGAGCAATGAGAACAATTGGAGCCAGAATGTACAATTGAGTATCCACGGCCAAGTACCAGGACACTCCATAGCAAGTTGTCATTTGATTCAAATCGTAGTTGTTGATGTACAGCAAGTTTCTCCACCAATTTGACTTACAAGCATTAGCTTCATGGTTCTGGGCATCTGAAATTAAAGCGACGTTCGAGGATACGGTATTAGACACCTACTCCACATCCACGCGTTATAGGGTCCTTGCACATAAGGACTATAGACTACAAAAAATCCGATGAACAGCATGTAAGGAGGCGTGAGACGGAGATAACGGTGTAGGTAGAATAGAATCCAGGTCAACGGACTTTTGATGACAGCTGGCTTGGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTTAAAAATAGGGGATTAACCTTAAAGAACAAGTAAGCCACTACAATTCCAGATAATAAGAAAAAAGTGTCAACGGAGAGGACGGCTTGAAGGAAGAGGTGATTCCAGATATGCTTACTCACAGAACTCAATGGGAGAAGGGCATCTGAATTAATGGGTGATTTTTTGTTACTCCAACTATTGGAGGACTTACCAGAAAACAAAAAGTACATGAGCGCGTGTCCAGCGACAACCCAGGACATGGAAAACGCGCGGATGCAGTCTAGGGACTTTATGAATCCAGGCTTTTG</canonical>
            <polymorphic>AGAATAGCCTAAAACCCCCCAAATATCAGGTTACTTTCTAGGCCTCAAAAGTTGGTGTTCTGGGAAAACTCAACTTGCAAAAATTAGGCCACCAACCCAACAAGTGCCTTTTAGGTCTTTTTTTCGAGCTTTTCAAACTGCTCTAACTCACTCATCATGATACGAATCCGCAGCCATGTTATCATAGACACCATACAAAATATATGTAGTAATAATACTTCCGACGCACCCAGCGACAACTGTTATGGCTCCTGAAATAGATTCCTGGTACAAAAAACAATGATTATTAAACAAAACCTGCAGCAAAACTAAAATAGAGAGCAATGAGAACAATTGGAGCCAGAATGTACAATTGAGTATCCACGGCCAAGTACCAGGACACTCCATAGCAAGTTGTCATTTGATTCAAATCGTAGTTGTTGATGTACAGCAAGTTTCTCCACCAATTTGACTTACAAGCATTAGCTTCATGGTTCTGGGCATCTGAAATTAAAGCGACRTTCGAGGATACGGTATTAGACACCTACTCCACATCCACGCGTTATAGGGTCCTTGCACATAAGGACTATAGACTACAAAAAATCCGATGAACAGCATGTAAGGAGGCGTGAGACGGAGATAACGGTGTAGGTAGAATAGAATCCAGGTCAACGGACTTTTGATGACAGCTGGCTTGGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTTAAAAATAGGGGATTAACCTTAAAGAACAAGTAAGCCACTACAATTCCAGATAATAAGAAAAAAGTGTCAACGGAGAGGACGGCTTGAAGGAAGAGGTGATTCCAGATATGCTTACTCACAGAACTCAATGGGAGAAGGGCATCTGAATTAATGGGTGATTTTTTGTTACTCCAACTATTGGAGGACTTACCAGAAAACAAAAAGTACATGAGCGCGTGTCCAGCGACAACCCAGGACATGGAAAACGCGCGGATGCAGTCTAGGGACTTTATGAATCCAGGCTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>500 274 226</canonical_bands>
                <polymorphic_bands>774 226</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATAGAGAGCAATGAGAACAA</pcr_primer_p1>
		<pcr_primer_p2>TTATGTGCAAGGACCCTATAAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAAATAGAGAGCAATGAGAACAATTGGAGCCAGAATGTACAATTGAGTATCCACGGCCAAGTACCAGGACACTCCATAGCAAGTTGTCATTTGATTCAAATCGTAGTTGTTGATGTACAGCAAGTTTCTCCACCAATTTGACTTACAAGCATTAGCTTCATGGTTCTGGGCATCTGAAATTAAAGCGACGTTCGAGGATACGGTATTAGACACCTACTCCACATCCACGCGTTATAGGGTCCTTGCACATAA</canonical_amplicon>
		<polymorphic_amplicon>AAAATAGAGAGCAATGAGAACAATTGGAGCCAGAATGTACAATTGAGTATCCACGGCCAAGTACCAGGACACTCCATAGCAAGTTGTCATTTGATTCAAATCGTAGTTGTTGATGTACAGCAAGTTTCTCCACCAATTTGACTTACAAGCATTAGCTTCATGGTTCTGGGCATCTGAAATTAAAGCGACRTTCGAGGATACGGTATTAGACACCTACTCCACATCCACGCGTTATAGGGTCCTTGCACATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22727</snp_id>
        <super_contig>c013801131.Contig1</super_contig>
        <contig_pos>27737</contig_pos>
        <strand>+</strand>
        <context>ACTACAAAAA[A/T]TCCGATGAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATCCACGCGTTATAGGGTCCTTGCACATAAGGACTATAGACTACAAAAA</left_flank>
        <right_flank>TCCGATGAACAGCATGTAAGGAGGCGTGAGACGGAGATAACGGTGTAGGT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAGGCCACCAACCCAACAAGTGCCTTTTAGGTCTTTTTTTCGAGCTTTTCAAACTGCTCTAACTCACTCATCATGATACGAATCCGCAGCCATGTTATCATAGACACCATACAAAATATATGTAGTAATAATACTTCCGACGCACCCAGCGACAACTGTTATGGCTCCTGAAATAGATTCCTGGTACAAAAAACAATGATTATTAAACAAAACCTGCAGCAAAACTAAAATAGAGAGCAATGAGAACAATTGGAGCCAGAATGTACAATTGAGTATCCACGGCCAAGTACCAGGACACTCCATAGCAAGTTGTCATTTGATTCAAATCGTAGTTGTTGATGTACAGCAAGTTTCTCCACCAATTTGACTTACAAGCATTAGCTTCATGGTTCTGGGCATCTGAAATTAAAGCGACGTTCGAGGATACGGTATTAGACACCTACTCCACATCCACGCGTTATAGGGTCCTTGCACATAAGGACTATAGACTACAAAAAATCCGATGAACAGCATGTAAGGAGGCGTGAGACGGAGATAACGGTGTAGGTAGAATAGAATCCAGGTCAACGGACTTTTGATGACAGCTGGCTTGGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTTAAAAATAGGGGATTAACCTTAAAGAACAAGTAAGCCACTACAATTCCAGATAATAAGAAAAAAGTGTCAACGGAGAGGACGGCTTGAAGGAAGAGGTGATTCCAGATATGCTTACTCACAGAACTCAATGGGAGAAGGGCATCTGAATTAATGGGTGATTTTTTGTTACTCCAACTATTGGAGGACTTACCAGAAAACAAAAAGTACATGAGCGCGTGTCCAGCGACAACCCAGGACATGGAAAACGCGCGGATGCAGTCTAGGGACTTTATGAATCCAGGCTTTTGTTCCTTGACAGATAACACTTGGCCAGCGTTGGTCCAGAACGAGAAGGCAATGAGGATTTTGAGAGCTGAAAATGAGAAGATT</canonical>
            <polymorphic>ATTAGGCCACCAACCCAACAAGTGCCTTTTAGGTCTTTTTTTCGAGCTTTTCAAACTGCTCTAACTCACTCATCATGATACGAATCCGCAGCCATGTTATCATAGACACCATACAAAATATATGTAGTAATAATACTTCCGACGCACCCAGCGACAACTGTTATGGCTCCTGAAATAGATTCCTGGTACAAAAAACAATGATTATTAAACAAAACCTGCAGCAAAACTAAAATAGAGAGCAATGAGAACAATTGGAGCCAGAATGTACAATTGAGTATCCACGGCCAAGTACCAGGACACTCCATAGCAAGTTGTCATTTGATTCAAATCGTAGTTGTTGATGTACAGCAAGTTTCTCCACCAATTTGACTTACAAGCATTAGCTTCATGGTTCTGGGCATCTGAAATTAAAGCGACGTTCGAGGATACGGTATTAGACACCTACTCCACATCCACGCGTTATAGGGTCCTTGCACATAAGGACTATAGACTACAAAAAWTCCGATGAACAGCATGTAAGGAGGCGTGAGACGGAGATAACGGTGTAGGTAGAATAGAATCCAGGTCAACGGACTTTTGATGACAGCTGGCTTGGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTTAAAAATAGGGGATTAACCTTAAAGAACAAGTAAGCCACTACAATTCCAGATAATAAGAAAAAAGTGTCAACGGAGAGGACGGCTTGAAGGAAGAGGTGATTCCAGATATGCTTACTCACAGAACTCAATGGGAGAAGGGCATCTGAATTAATGGGTGATTTTTTGTTACTCCAACTATTGGAGGACTTACCAGAAAACAAAAAGTACATGAGCGCGTGTCCAGCGACAACCCAGGACATGGAAAACGCGCGGATGCAGTCTAGGGACTTTATGAATCCAGGCTTTTGTTCCTTGACAGATAACACTTGGCCAGCGTTGGTCCAGAACGAGAAGGCAATGAGGATTTTGAGAGCTGAAAATGAGAAGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATACGGTATTAGACACCTACTCC</pcr_primer_p1>
		<pcr_primer_p2>TTGTAGTGGCTTACTTGTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATACGGTATTAGACACCTACTCCACATCCACGCGTTATAGGGTCCTTGCACATAAGGACTATAGACTACAAAAAATCCGATGAACAGCATGTAAGGAGGCGTGAGACGGAGATAACGGTGTAGGTAGAATAGAATCCAGGTCAACGGACTTTTGATGACAGCTGGCTTGGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTTAAAAATAGGGGATTAACCTTAAAGAACAAGTAAGCCACTACAA</canonical_amplicon>
		<polymorphic_amplicon>GATACGGTATTAGACACCTACTCCACATCCACGCGTTATAGGGTCCTTGCACATAAGGACTATAGACTACAAAAAWTCCGATGAACAGCATGTAAGGAGGCGTGAGACGGAGATAACGGTGTAGGTAGAATAGAATCCAGGTCAACGGACTTTTGATGACAGCTGGCTTGGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTTAAAAATAGGGGATTAACCTTAAAGAACAAGTAAGCCACTACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22728</snp_id>
        <super_contig>c013801131.Contig1</super_contig>
        <contig_pos>27794</contig_pos>
        <strand>+</strand>
        <context>AGGTAGAATA[G/T]AATCCAGGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAACAGCATGTAAGGAGGCGTGAGACGGAGATAACGGTGTAGGTAGAATA</left_flank>
        <right_flank>AATCCAGGTCAACGGACTTTTGATGACAGCTGGCTTGGGGCGTTGCTAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTCTAACTCACTCATCATGATACGAATCCGCAGCCATGTTATCATAGACACCATACAAAATATATGTAGTAATAATACTTCCGACGCACCCAGCGACAACTGTTATGGCTCCTGAAATAGATTCCTGGTACAAAAAACAATGATTATTAAACAAAACCTGCAGCAAAACTAAAATAGAGAGCAATGAGAACAATTGGAGCCAGAATGTACAATTGAGTATCCACGGCCAAGTACCAGGACACTCCATAGCAAGTTGTCATTTGATTCAAATCGTAGTTGTTGATGTACAGCAAGTTTCTCCACCAATTTGACTTACAAGCATTAGCTTCATGGTTCTGGGCATCTGAAATTAAAGCGACGTTCGAGGATACGGTATTAGACACCTACTCCACATCCACGCGTTATAGGGTCCTTGCACATAAGGACTATAGACTACAAAAAATCCGATGAACAGCATGTAAGGAGGCGTGAGACGGAGATAACGGTGTAGGTAGAATAGAATCCAGGTCAACGGACTTTTGATGACAGCTGGCTTGGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTTAAAAATAGGGGATTAACCTTAAAGAACAAGTAAGCCACTACAATTCCAGATAATAAGAAAAAAGTGTCAACGGAGAGGACGGCTTGAAGGAAGAGGTGATTCCAGATATGCTTACTCACAGAACTCAATGGGAGAAGGGCATCTGAATTAATGGGTGATTTTTTGTTACTCCAACTATTGGAGGACTTACCAGAAAACAAAAAGTACATGAGCGCGTGTCCAGCGACAACCCAGGACATGGAAAACGCGCGGATGCAGTCTAGGGACTTTATGAATCCAGGCTTTTGTTCCTTGACAGATAACACTTGGCCAGCGTTGGTCCAGAACGAGAAGGCAATGAGGATTTTGAGAGCTGAAAATGAGAAGATTCAGATTTTCGAAGGCTTAGGTTCGGTAGTAAATCTTTAATAAGGTCACAACTTCAAG</canonical>
            <polymorphic>GCTCTAACTCACTCATCATGATACGAATCCGCAGCCATGTTATCATAGACACCATACAAAATATATGTAGTAATAATACTTCCGACGCACCCAGCGACAACTGTTATGGCTCCTGAAATAGATTCCTGGTACAAAAAACAATGATTATTAAACAAAACCTGCAGCAAAACTAAAATAGAGAGCAATGAGAACAATTGGAGCCAGAATGTACAATTGAGTATCCACGGCCAAGTACCAGGACACTCCATAGCAAGTTGTCATTTGATTCAAATCGTAGTTGTTGATGTACAGCAAGTTTCTCCACCAATTTGACTTACAAGCATTAGCTTCATGGTTCTGGGCATCTGAAATTAAAGCGACGTTCGAGGATACGGTATTAGACACCTACTCCACATCCACGCGTTATAGGGTCCTTGCACATAAGGACTATAGACTACAAAAAATCCGATGAACAGCATGTAAGGAGGCGTGAGACGGAGATAACGGTGTAGGTAGAATAKAATCCAGGTCAACGGACTTTTGATGACAGCTGGCTTGGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTTAAAAATAGGGGATTAACCTTAAAGAACAAGTAAGCCACTACAATTCCAGATAATAAGAAAAAAGTGTCAACGGAGAGGACGGCTTGAAGGAAGAGGTGATTCCAGATATGCTTACTCACAGAACTCAATGGGAGAAGGGCATCTGAATTAATGGGTGATTTTTTGTTACTCCAACTATTGGAGGACTTACCAGAAAACAAAAAGTACATGAGCGCGTGTCCAGCGACAACCCAGGACATGGAAAACGCGCGGATGCAGTCTAGGGACTTTATGAATCCAGGCTTTTGTTCCTTGACAGATAACACTTGGCCAGCGTTGGTCCAGAACGAGAAGGCAATGAGGATTTTGAGAGCTGAAAATGAGAAGATTCAGATTTTCGAAGGCTTAGGTTCGGTAGTAAATCTTTAATAAGGTCACAACTTCAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>236 175 172 143 96 93 60 25</canonical_bands>
                <polymorphic_bands>408 175 143 96 93 60 25</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>236 175 172 143 96 93 60 25</canonical_bands>
                <polymorphic_bands>408 175 143 96 93 60 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATACGGTATTAGACACCTACTCC</pcr_primer_p1>
		<pcr_primer_p2>TTGTAGTGGCTTACTTGTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATACGGTATTAGACACCTACTCCACATCCACGCGTTATAGGGTCCTTGCACATAAGGACTATAGACTACAAAAAATCCGATGAACAGCATGTAAGGAGGCGTGAGACGGAGATAACGGTGTAGGTAGAATAGAATCCAGGTCAACGGACTTTTGATGACAGCTGGCTTGGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTTAAAAATAGGGGATTAACCTTAAAGAACAAGTAAGCCACTACAA</canonical_amplicon>
		<polymorphic_amplicon>GATACGGTATTAGACACCTACTCCACATCCACGCGTTATAGGGTCCTTGCACATAAGGACTATAGACTACAAAAAATCCGATGAACAGCATGTAAGGAGGCGTGAGACGGAGATAACGGTGTAGGTAGAATAKAATCCAGGTCAACGGACTTTTGATGACAGCTGGCTTGGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTTAAAAATAGGGGATTAACCTTAAAGAACAAGTAAGCCACTACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22729</snp_id>
        <super_contig>c013801131.Contig1</super_contig>
        <contig_pos>27819</contig_pos>
        <strand>+</strand>
        <context>GACTTTTGAT[A/G]ACAGCTGGCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGAGATAACGGTGTAGGTAGAATAGAATCCAGGTCAACGGACTTTTGAT</left_flank>
        <right_flank>ACAGCTGGCTTGGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCCGCAGCCATGTTATCATAGACACCATACAAAATATATGTAGTAATAATACTTCCGACGCACCCAGCGACAACTGTTATGGCTCCTGAAATAGATTCCTGGTACAAAAAACAATGATTATTAAACAAAACCTGCAGCAAAACTAAAATAGAGAGCAATGAGAACAATTGGAGCCAGAATGTACAATTGAGTATCCACGGCCAAGTACCAGGACACTCCATAGCAAGTTGTCATTTGATTCAAATCGTAGTTGTTGATGTACAGCAAGTTTCTCCACCAATTTGACTTACAAGCATTAGCTTCATGGTTCTGGGCATCTGAAATTAAAGCGACGTTCGAGGATACGGTATTAGACACCTACTCCACATCCACGCGTTATAGGGTCCTTGCACATAAGGACTATAGACTACAAAAAATCCGATGAACAGCATGTAAGGAGGCGTGAGACGGAGATAACGGTGTAGGTAGAATAGAATCCAGGTCAACGGACTTTTGATGACAGCTGGCTTGGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTTAAAAATAGGGGATTAACCTTAAAGAACAAGTAAGCCACTACAATTCCAGATAATAAGAAAAAAGTGTCAACGGAGAGGACGGCTTGAAGGAAGAGGTGATTCCAGATATGCTTACTCACAGAACTCAATGGGAGAAGGGCATCTGAATTAATGGGTGATTTTTTGTTACTCCAACTATTGGAGGACTTACCAGAAAACAAAAAGTACATGAGCGCGTGTCCAGCGACAACCCAGGACATGGAAAACGCGCGGATGCAGTCTAGGGACTTTATGAATCCAGGCTTTTGTTCCTTGACAGATAACACTTGGCCAGCGTTGGTCCAGAACGAGAAGGCAATGAGGATTTTGAGAGCTGAAAATGAGAAGATTCAGATTTTCGAAGGCTTAGGTTCGGTAGTAAATCTTTAATAAGGTCACAACTTCAAGCCAATTTTTCTCGTTACCTGTTGAA</canonical>
            <polymorphic>AATCCGCAGCCATGTTATCATAGACACCATACAAAATATATGTAGTAATAATACTTCCGACGCACCCAGCGACAACTGTTATGGCTCCTGAAATAGATTCCTGGTACAAAAAACAATGATTATTAAACAAAACCTGCAGCAAAACTAAAATAGAGAGCAATGAGAACAATTGGAGCCAGAATGTACAATTGAGTATCCACGGCCAAGTACCAGGACACTCCATAGCAAGTTGTCATTTGATTCAAATCGTAGTTGTTGATGTACAGCAAGTTTCTCCACCAATTTGACTTACAAGCATTAGCTTCATGGTTCTGGGCATCTGAAATTAAAGCGACGTTCGAGGATACGGTATTAGACACCTACTCCACATCCACGCGTTATAGGGTCCTTGCACATAAGGACTATAGACTACAAAAAATCCGATGAACAGCATGTAAGGAGGCGTGAGACGGAGATAACGGTGTAGGTAGAATAGAATCCAGGTCAACGGACTTTTGATRACAGCTGGCTTGGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTTAAAAATAGGGGATTAACCTTAAAGAACAAGTAAGCCACTACAATTCCAGATAATAAGAAAAAAGTGTCAACGGAGAGGACGGCTTGAAGGAAGAGGTGATTCCAGATATGCTTACTCACAGAACTCAATGGGAGAAGGGCATCTGAATTAATGGGTGATTTTTTGTTACTCCAACTATTGGAGGACTTACCAGAAAACAAAAAGTACATGAGCGCGTGTCCAGCGACAACCCAGGACATGGAAAACGCGCGGATGCAGTCTAGGGACTTTATGAATCCAGGCTTTTGTTCCTTGACAGATAACACTTGGCCAGCGTTGGTCCAGAACGAGAAGGCAATGAGGATTTTGAGAGCTGAAAATGAGAAGATTCAGATTTTCGAAGGCTTAGGTTCGGTAGTAAATCTTTAATAAGGTCACAACTTCAAGCCAATTTTTCTCGTTACCTGTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATACGGTATTAGACACCTACTCC</pcr_primer_p1>
		<pcr_primer_p2>TTGTAGTGGCTTACTTGTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATACGGTATTAGACACCTACTCCACATCCACGCGTTATAGGGTCCTTGCACATAAGGACTATAGACTACAAAAAATCCGATGAACAGCATGTAAGGAGGCGTGAGACGGAGATAACGGTGTAGGTAGAATAGAATCCAGGTCAACGGACTTTTGATGACAGCTGGCTTGGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTTAAAAATAGGGGATTAACCTTAAAGAACAAGTAAGCCACTACAA</canonical_amplicon>
		<polymorphic_amplicon>GATACGGTATTAGACACCTACTCCACATCCACGCGTTATAGGGTCCTTGCACATAAGGACTATAGACTACAAAAAATCCGATGAACAGCATGTAAGGAGGCGTGAGACGGAGATAACGGTGTAGGTAGAATAGAATCCAGGTCAACGGACTTTTGATRACAGCTGGCTTGGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTTAAAAATAGGGGATTAACCTTAAAGAACAAGTAAGCCACTACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22730</snp_id>
        <super_contig>c013801131.Contig1</super_contig>
        <contig_pos>27868</contig_pos>
        <strand></strand>
        <context>ACGAAAACCT[T/C]AAAAATAGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGACAGCTGGCTTGGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCT</left_flank>
        <right_flank>AAAAATAGGGGATTAACCTTAAAGAACAAGTAAGCCACTACAATTCCAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATACTTCCGACGCACCCAGCGACAACTGTTATGGCTCCTGAAATAGATTCCTGGTACAAAAAACAATGATTATTAAACAAAACCTGCAGCAAAACTAAAATAGAGAGCAATGAGAACAATTGGAGCCAGAATGTACAATTGAGTATCCACGGCCAAGTACCAGGACACTCCATAGCAAGTTGTCATTTGATTCAAATCGTAGTTGTTGATGTACAGCAAGTTTCTCCACCAATTTGACTTACAAGCATTAGCTTCATGGTTCTGGGCATCTGAAATTAAAGCGACGTTCGAGGATACGGTATTAGACACCTACTCCACATCCACGCGTTATAGGGTCCTTGCACATAAGGACTATAGACTACAAAAAATCCGATGAACAGCATGTAAGGAGGCGTGAGACGGAGATAACGGTGTAGGTAGAATAGAATCCAGGTCAACGGACTTTTGATGACAGCTGGCTTGGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTTAAAAATAGGGGATTAACCTTAAAGAACAAGTAAGCCACTACAATTCCAGATAATAAGAAAAAAGTGTCAACGGAGAGGACGGCTTGAAGGAAGAGGTGATTCCAGATATGCTTACTCACAGAACTCAATGGGAGAAGGGCATCTGAATTAATGGGTGATTTTTTGTTACTCCAACTATTGGAGGACTTACCAGAAAACAAAAAGTACATGAGCGCGTGTCCAGCGACAACCCAGGACATGGAAAACGCGCGGATGCAGTCTAGGGACTTTATGAATCCAGGCTTTTGTTCCTTGACAGATAACACTTGGCCAGCGTTGGTCCAGAACGAGAAGGCAATGAGGATTTTGAGAGCTGAAAATGAGAAGATTCAGATTTTCGAAGGCTTAGGTTCGGTAGTAAATCTTTAATAAGGTCACAACTTCAAGCCAATTTTTCTCGTTACCTGTTGAAGATATTAGAAATTGGTCACCTAACAAAACGTTTATCGTATTTTATCGTT</canonical>
            <polymorphic>AATACTTCCGACGCACCCAGCGACAACTGTTATGGCTCCTGAAATAGATTCCTGGTACAAAAAACAATGATTATTAAACAAAACCTGCAGCAAAACTAAAATAGAGAGCAATGAGAACAATTGGAGCCAGAATGTACAATTGAGTATCCACGGCCAAGTACCAGGACACTCCATAGCAAGTTGTCATTTGATTCAAATCGTAGTTGTTGATGTACAGCAAGTTTCTCCACCAATTTGACTTACAAGCATTAGCTTCATGGTTCTGGGCATCTGAAATTAAAGCGACGTTCGAGGATACGGTATTAGACACCTACTCCACATCCACGCGTTATAGGGTCCTTGCACATAAGGACTATAGACTACAAAAAATCCGATGAACAGCATGTAAGGAGGCGTGAGACGGAGATAACGGTGTAGGTAGAATAGAATCCAGGTCAACGGACTTTTGATGACAGCTGGCTTGGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTYAAAAATAGGGGATTAACCTTAAAGAACAAGTAAGCCACTACAATTCCAGATAATAAGAAAAAAGTGTCAACGGAGAGGACGGCTTGAAGGAAGAGGTGATTCCAGATATGCTTACTCACAGAACTCAATGGGAGAAGGGCATCTGAATTAATGGGTGATTTTTTGTTACTCCAACTATTGGAGGACTTACCAGAAAACAAAAAGTACATGAGCGCGTGTCCAGCGACAACCCAGGACATGGAAAACGCGCGGATGCAGTCTAGGGACTTTATGAATCCAGGCTTTTGTTCCTTGACAGATAACACTTGGCCAGCGTTGGTCCAGAACGAGAAGGCAATGAGGATTTTGAGAGCTGAAAATGAGAAGATTCAGATTTTCGAAGGCTTAGGTTCGGTAGTAAATCTTTAATAAGGTCACAACTTCAAGCCAATTTTTCTCGTTACCTGTTGAAGATATTAGAAATTGGTCACCTAACAAAACGTTTATCGTATTTTATCGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>257 222 203 129 95 74 14 6</canonical_bands>
                <polymorphic_bands>257 236 203 129 95 74 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAGATAACGGTGTAGGTAGAAT</pcr_primer_p1>
		<pcr_primer_p2>ATTAATTCAGATGCCCTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGAGATAACGGTGTAGGTAGAATAGAATCCAGGTCAACGGACTTTTGATGACAGCTGGCTTGGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTTAAAAATAGGGGATTAACCTTAAAGAACAAGTAAGCCACTACAATTCCAGATAATAAGAAAAAAGTGTCAACGGAGAGGACGGCTTGAAGGAAGAGGTGATTCCAGATATGCTTACTCACAGAACTCAATGGGAGAAGGGCATCTGAATTAAT</canonical_amplicon>
		<polymorphic_amplicon>GGAGATAACGGTGTAGGTAGAATAGAATCCAGGTCAACGGACTTTTGATGACAGCTGGCTTGGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTYAAAAATAGGGGATTAACCTTAAAGAACAAGTAAGCCACTACAATTCCAGATAATAAGAAAAAAGTGTCAACGGAGAGGACGGCTTGAAGGAAGAGGTGATTCCAGATATGCTTACTCACAGAACTCAATGGGAGAAGGGCATCTGAATTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22731</snp_id>
        <super_contig>c013801131.Contig1</super_contig>
        <contig_pos>27881</contig_pos>
        <strand></strand>
        <context>AAATAGGGGA[T/C]YAACCTTAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTTAAAAATAGGGGA</left_flank>
        <right_flank>TAACCTTAAAGAACAAGTAAGCCACTACAATTCCAGATAATAAGAAAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACCCAGCGACAACTGTTATGGCTCCTGAAATAGATTCCTGGTACAAAAAACAATGATTATTAAACAAAACCTGCAGCAAAACTAAAATAGAGAGCAATGAGAACAATTGGAGCCAGAATGTACAATTGAGTATCCACGGCCAAGTACCAGGACACTCCATAGCAAGTTGTCATTTGATTCAAATCGTAGTTGTTGATGTACAGCAAGTTTCTCCACCAATTTGACTTACAAGCATTAGCTTCATGGTTCTGGGCATCTGAAATTAAAGCGACGTTCGAGGATACGGTATTAGACACCTACTCCACATCCACGCGTTATAGGGTCCTTGCACATAAGGACTATAGACTACAAAAAATCCGATGAACAGCATGTAAGGAGGCGTGAGACGGAGATAACGGTGTAGGTAGAATAGAATCCAGGTCAACGGACTTTTGATGACAGCTGGCTTGGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTTAAAAATAGGGGATTAACCTTAAAGAACAAGTAAGCCACTACAATTCCAGATAATAAGAAAAAAGTGTCAACGGAGAGGACGGCTTGAAGGAAGAGGTGATTCCAGATATGCTTACTCACAGAACTCAATGGGAGAAGGGCATCTGAATTAATGGGTGATTTTTTGTTACTCCAACTATTGGAGGACTTACCAGAAAACAAAAAGTACATGAGCGCGTGTCCAGCGACAACCCAGGACATGGAAAACGCGCGGATGCAGTCTAGGGACTTTATGAATCCAGGCTTTTGTTCCTTGACAGATAACACTTGGCCAGCGTTGGTCCAGAACGAGAAGGCAATGAGGATTTTGAGAGCTGAAAATGAGAAGATTCAGATTTTCGAAGGCTTAGGTTCGGTAGTAAATCTTTAATAAGGTCACAACTTCAAGCCAATTTTTCTCGTTACCTGTTGAAGATATTAGAAATTGGTCACCTAACAAAACGTTTATCGTATTTTATCGTTTTGTCAGTTGAAG</canonical>
            <polymorphic>CACCCAGCGACAACTGTTATGGCTCCTGAAATAGATTCCTGGTACAAAAAACAATGATTATTAAACAAAACCTGCAGCAAAACTAAAATAGAGAGCAATGAGAACAATTGGAGCCAGAATGTACAATTGAGTATCCACGGCCAAGTACCAGGACACTCCATAGCAAGTTGTCATTTGATTCAAATCGTAGTTGTTGATGTACAGCAAGTTTCTCCACCAATTTGACTTACAAGCATTAGCTTCATGGTTCTGGGCATCTGAAATTAAAGCGACGTTCGAGGATACGGTATTAGACACCTACTCCACATCCACGCGTTATAGGGTCCTTGCACATAAGGACTATAGACTACAAAAAATCCGATGAACAGCATGTAAGGAGGCGTGAGACGGAGATAACGGTGTAGGTAGAATAGAATCCAGGTCAACGGACTTTTGATGACAGCTGGCTTGGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTTAAAAATAGGGGAYTAACCTTAAAGAACAAGTAAGCCACTACAATTCCAGATAATAAGAAAAAAGTGTCAACGGAGAGGACGGCTTGAAGGAAGAGGTGATTCCAGATATGCTTACTCACAGAACTCAATGGGAGAAGGGCATCTGAATTAATGGGTGATTTTTTGTTACTCCAACTATTGGAGGACTTACCAGAAAACAAAAAGTACATGAGCGCGTGTCCAGCGACAACCCAGGACATGGAAAACGCGCGGATGCAGTCTAGGGACTTTATGAATCCAGGCTTTTGTTCCTTGACAGATAACACTTGGCCAGCGTTGGTCCAGAACGAGAAGGCAATGAGGATTTTGAGAGCTGAAAATGAGAAGATTCAGATTTTCGAAGGCTTAGGTTCGGTAGTAAATCTTTAATAAGGTCACAACTTCAAGCCAATTTTTCTCGTTACCTGTTGAAGATATTAGAAATTGGTCACCTAACAAAACGTTTATCGTATTTTATCGTTTTGTCAGTTGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>257 222 203 129 108 61 14 6</canonical_bands>
                <polymorphic_bands>257 222 203 129 108 61 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAGATAACGGTGTAGGTAGAAT</pcr_primer_p1>
		<pcr_primer_p2>ATTAATTCAGATGCCCTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGAGATAACGGTGTAGGTAGAATAGAATCCAGGTCAACGGACTTTTGATGACAGCTGGCTTGGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTTAAAAATAGGGGATTAACCTTAAAGAACAAGTAAGCCACTACAATTCCAGATAATAAGAAAAAAGTGTCAACGGAGAGGACGGCTTGAAGGAAGAGGTGATTCCAGATATGCTTACTCACAGAACTCAATGGGAGAAGGGCATCTGAATTAAT</canonical_amplicon>
		<polymorphic_amplicon>GGAGATAACGGTGTAGGTAGAATAGAATCCAGGTCAACGGACTTTTGATGACAGCTGGCTTGGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTTAAAAATAGGGGAYTAACCTTAAAGAACAAGTAAGCCACTACAATTCCAGATAATAAGAAAAAAGTGTCAACGGAGAGGACGGCTTGAAGGAAGAGGTGATTCCAGATATGCTTACTCACAGAACTCAATGGGAGAAGGGCATCTGAATTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22732</snp_id>
        <super_contig>c013801131.Contig1</super_contig>
        <contig_pos>27882</contig_pos>
        <strand></strand>
        <context>AATAGGGGAY[T/C]AACCTTAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTTAAAAATAGGGGAT</left_flank>
        <right_flank>AACCTTAAAGAACAAGTAAGCCACTACAATTCCAGATAATAAGAAAAAAG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCCAGCGACAACTGTTATGGCTCCTGAAATAGATTCCTGGTACAAAAAACAATGATTATTAAACAAAACCTGCAGCAAAACTAAAATAGAGAGCAATGAGAACAATTGGAGCCAGAATGTACAATTGAGTATCCACGGCCAAGTACCAGGACACTCCATAGCAAGTTGTCATTTGATTCAAATCGTAGTTGTTGATGTACAGCAAGTTTCTCCACCAATTTGACTTACAAGCATTAGCTTCATGGTTCTGGGCATCTGAAATTAAAGCGACGTTCGAGGATACGGTATTAGACACCTACTCCACATCCACGCGTTATAGGGTCCTTGCACATAAGGACTATAGACTACAAAAAATCCGATGAACAGCATGTAAGGAGGCGTGAGACGGAGATAACGGTGTAGGTAGAATAGAATCCAGGTCAACGGACTTTTGATGACAGCTGGCTTGGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTTAAAAATAGGGGATTAACCTTAAAGAACAAGTAAGCCACTACAATTCCAGATAATAAGAAAAAAGTGTCAACGGAGAGGACGGCTTGAAGGAAGAGGTGATTCCAGATATGCTTACTCACAGAACTCAATGGGAGAAGGGCATCTGAATTAATGGGTGATTTTTTGTTACTCCAACTATTGGAGGACTTACCAGAAAACAAAAAGTACATGAGCGCGTGTCCAGCGACAACCCAGGACATGGAAAACGCGCGGATGCAGTCTAGGGACTTTATGAATCCAGGCTTTTGTTCCTTGACAGATAACACTTGGCCAGCGTTGGTCCAGAACGAGAAGGCAATGAGGATTTTGAGAGCTGAAAATGAGAAGATTCAGATTTTCGAAGGCTTAGGTTCGGTAGTAAATCTTTAATAAGGTCACAACTTCAAGCCAATTTTTCTCGTTACCTGTTGAAGATATTAGAAATTGGTCACCTAACAAAACGTTTATCGTATTTTATCGTTTTGTCAGTTGAAGA</canonical>
            <polymorphic>ACCCAGCGACAACTGTTATGGCTCCTGAAATAGATTCCTGGTACAAAAAACAATGATTATTAAACAAAACCTGCAGCAAAACTAAAATAGAGAGCAATGAGAACAATTGGAGCCAGAATGTACAATTGAGTATCCACGGCCAAGTACCAGGACACTCCATAGCAAGTTGTCATTTGATTCAAATCGTAGTTGTTGATGTACAGCAAGTTTCTCCACCAATTTGACTTACAAGCATTAGCTTCATGGTTCTGGGCATCTGAAATTAAAGCGACGTTCGAGGATACGGTATTAGACACCTACTCCACATCCACGCGTTATAGGGTCCTTGCACATAAGGACTATAGACTACAAAAAATCCGATGAACAGCATGTAAGGAGGCGTGAGACGGAGATAACGGTGTAGGTAGAATAGAATCCAGGTCAACGGACTTTTGATGACAGCTGGCTTGGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTTAAAAATAGGGGATYAACCTTAAAGAACAAGTAAGCCACTACAATTCCAGATAATAAGAAAAAAGTGTCAACGGAGAGGACGGCTTGAAGGAAGAGGTGATTCCAGATATGCTTACTCACAGAACTCAATGGGAGAAGGGCATCTGAATTAATGGGTGATTTTTTGTTACTCCAACTATTGGAGGACTTACCAGAAAACAAAAAGTACATGAGCGCGTGTCCAGCGACAACCCAGGACATGGAAAACGCGCGGATGCAGTCTAGGGACTTTATGAATCCAGGCTTTTGTTCCTTGACAGATAACACTTGGCCAGCGTTGGTCCAGAACGAGAAGGCAATGAGGATTTTGAGAGCTGAAAATGAGAAGATTCAGATTTTCGAAGGCTTAGGTTCGGTAGTAAATCTTTAATAAGGTCACAACTTCAAGCCAATTTTTCTCGTTACCTGTTGAAGATATTAGAAATTGGTCACCTAACAAAACGTTTATCGTATTTTATCGTTTTGTCAGTTGAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>257 222 203 129 109 60 14 6</canonical_bands>
                <polymorphic_bands>257 222 203 129 109 60 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAGATAACGGTGTAGGTAGAAT</pcr_primer_p1>
		<pcr_primer_p2>ATTAATTCAGATGCCCTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGAGATAACGGTGTAGGTAGAATAGAATCCAGGTCAACGGACTTTTGATGACAGCTGGCTTGGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTTAAAAATAGGGGATTAACCTTAAAGAACAAGTAAGCCACTACAATTCCAGATAATAAGAAAAAAGTGTCAACGGAGAGGACGGCTTGAAGGAAGAGGTGATTCCAGATATGCTTACTCACAGAACTCAATGGGAGAAGGGCATCTGAATTAAT</canonical_amplicon>
		<polymorphic_amplicon>GGAGATAACGGTGTAGGTAGAATAGAATCCAGGTCAACGGACTTTTGATGACAGCTGGCTTGGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTTAAAAATAGGGGATYAACCTTAAAGAACAAGTAAGCCACTACAATTCCAGATAATAAGAAAAAAGTGTCAACGGAGAGGACGGCTTGAAGGAAGAGGTGATTCCAGATATGCTTACTCACAGAACTCAATGGGAGAAGGGCATCTGAATTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22733</snp_id>
        <super_contig>c013801131.Contig1</super_contig>
        <contig_pos>29867</contig_pos>
        <strand>+</strand>
        <context>CTAAATGTTT[C/T]TTTCAACTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCAGAACTTGAGGAATCTTAAAATATATTAGCTCTCCATTCTAAATGTTT</left_flank>
        <right_flank>TTTCAACTAATTATTGTTCAAAAGATTTGATAAATTCAGATTTTCTGAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTGATTCTTGAAAAGAATTCTAAAGACTTACGCTGAACTGCAAAAAGATTCTCTTTTAATATTTTCGGATTACATTTTCCACCAGACATACAAATACTAGACTCGGCCAAAAACAATTCCAGTGATCCCAACCACAGTTTTGTTTCTTTGGTACATTGTGCGGAGACTCCAGTGTAATTCAAATGAGGAATAGTAGACAAAATCAAATCCTGAAATTCACTTAAAATTTTGAGAAAAAAGAAATTACCCACCTGCCAGTCAGTATTTCTGGATGAAACCGTTAGAAAGACAAAAAATAAATTAAAAATTTTAATCATTTTCAACACTTTTTGACTTTGTGCCAGTTGATTTATATAGGTGTTGGGAGACAAAATGATGATAGATTAGTTTTTTGAACTGATAAAAATTTTCTGTGAAGTACAAAAAGTAGAAAACTTGCCAGAAAGGGCAGAACTTGAGGAATCTTAAAATATATTAGCTCTCCATTCTAAATGTTTCTTTCAACTAATTATTGTTCAAAAGATTTGATAAATTCAGATTTTCTGAATAATAACAAAACCGGGAACATTATGATTCTGCTCGTTTTTATGATTTTGTGCACTTGGTTTCCTTATCAGTGACGAAGAACTGATTAAAATAGGAAAGAGGGATGAGTCGGGGGTCCACTGAAAAAGCATTTGTAGGTCTAAAAATTTGAGTCATAGATTTTTTGAAAGAATCGAAAGTTCTTAAAGGAGAGGGGACATGAAAAAAGTTAATTTTTCGAAAATTTTGTCATAAAAATCCCTCGAGGTGTTTTTTTTTCTGAATCTTCGGCATTTTTGATGTTCAAAGATTTTTTTTTGAACTTTTATAATTTTCGATATCCTTGGAGCGTTTGGAGCTCTTTTAAAATTTCGCCTTTTTTCTTTACCATTCAAAAAATTTTAGCGGTTTTTTTACTTTTTGAAGATTTTCAGAATTTTGAAGATTTTTTTGAAATTTTTTGAATTTGATGA</canonical>
            <polymorphic>AGGTGATTCTTGAAAAGAATTCTAAAGACTTACGCTGAACTGCAAAAAGATTCTCTTTTAATATTTTCGGATTACATTTTCCACCAGACATACAAATACTAGACTCGGCCAAAAACAATTCCAGTGATCCCAACCACAGTTTTGTTTCTTTGGTACATTGTGCGGAGACTCCAGTGTAATTCAAATGAGGAATAGTAGACAAAATCAAATCCTGAAATTCACTTAAAATTTTGAGAAAAAAGAAATTACCCACCTGCCAGTCAGTATTTCTGGATGAAACCGTTAGAAAGACAAAAAATAAATTAAAAATTTTAATCATTTTCAACACTTTTTGACTTTGTGCCAGTTGATTTATATAGGTGTTGGGAGACAAAATGATGATAGATTAGTTTTTTGAACTGATAAAAATTTTCTGTGAAGTACAAAAAGTAGAAAACTTGCCAGAAAGGGCAGAACTTGAGGAATCTTAAAATATATTAGCTCTCCATTCTAAATGTTTYTTTCAACTAATTATTGTTCAAAAGATTTGATAAATTCAGATTTTCTGAATAATAACAAAACCGGGAACATTATGATTCTGCTCGTTTTTATGATTTTGTGCACTTGGTTTCCTTATCAGTGACGAAGAACTGATTAAAATAGGAAAGAGGGATGAGTCGGGGGTCCACTGAAAAAGCATTTGTAGGTCTAAAAATTTGAGTCATAGATTTTTTGAAAGAATCGAAAGTTCTTAAAGGAGAGGGGACATGAAAAAAGTTAATTTTTCGAAAATTTTGTCATAAAAATCCCTCGAGGTGTTTTTTTTTCTGAATCTTCGGCATTTTTGATGTTCAAAGATTTTTTTTTGAACTTTTATAATTTTCGATATCCTTGGAGCGTTTGGAGCTCTTTTAAAATTTCGCCTTTTTTCTTTACCATTCAAAAAATTTTAGCGGTTTTTTTACTTTTTGAAGATTTTCAGAATTTTGAAGATTTTTTTGAAATTTTTTGAATTTGATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATTTATATAGGTGTTGGGAGA</pcr_primer_p1>
		<pcr_primer_p2>AATCATAAAAACGAGCAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGATTTATATAGGTGTTGGGAGACAAAATGATGATAGATTAGTTTTTTGAACTGATAAAAATTTTCTGTGAAGTACAAAAAGTAGAAAACTTGCCAGAAAGGGCAGAACTTGAGGAATCTTAAAATATATTAGCTCTCCATTCTAAATGTTTCTTTCAACTAATTATTGTTCAAAAGATTTGATAAATTCAGATTTTCTGAATAATAACAAAACCGGGAACATTATGATTCTGCTCGTTTTTATGATT</canonical_amplicon>
		<polymorphic_amplicon>TGATTTATATAGGTGTTGGGAGACAAAATGATGATAGATTAGTTTTTTGAACTGATAAAAATTTTCTGTGAAGTACAAAAAGTAGAAAACTTGCCAGAAAGGGCAGAACTTGAGGAATCTTAAAATATATTAGCTCTCCATTCTAAATGTTTYTTTCAACTAATTATTGTTCAAAAGATTTGATAAATTCAGATTTTCTGAATAATAACAAAACCGGGAACATTATGATTCTGCTCGTTTTTATGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22758</snp_id>
        <super_contig>c013801131.Contig1</super_contig>
        <contig_pos>29602</contig_pos>
        <strand>+</strand>
        <context>AAAATTTTGA[A/G]AAAAAAGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGAGGAATAGTAGACAAAATCAAATCCTGAAATTCACTTAAAATTTTGA</left_flank>
        <right_flank>AAAAAAGAAATTACCCACCTGCCAGTCAGTATTTCTGGATGAAACCGTTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTGAAAAGTTTCGATCCCAACTGATTATATAGAATCGGAAGATCATGATGCTTGCAGGATCTTGGCATGCATACAGCGGATCGGAATGGAAGAGATGAAAATGGATTGTGGAATTTGGGTAATAAGGACATGTAGCAATAATTAGTGTCGTATTTGACACCACTGATCTGCTCGCATTCTTGGAAAGATCCCTCGAAAGTTGTGGAAAGTTCTAGAAGGCCTGGTTGGAGGAGACGACCGAAGGAGTCCAGTTCTAAATATATTAGGTGATTCTTGAAAAGAATTCTAAAGACTTACGCTGAACTGCAAAAAGATTCTCTTTTAATATTTTCGGATTACATTTTCCACCAGACATACAAATACTAGACTCGGCCAAAAACAATTCCAGTGATCCCAACCACAGTTTTGTTTCTTTGGTACATTGTGCGGAGACTCCAGTGTAATTCAAATGAGGAATAGTAGACAAAATCAAATCCTGAAATTCACTTAAAATTTTGAGAAAAAAGAAATTACCCACCTGCCAGTCAGTATTTCTGGATGAAACCGTTAGAAAGACAAAAAATAAATTAAAAATTTTAATCATTTTCAACACTTTTTGACTTTGTGCCAGTTGATTTATATAGGTGTTGGGAGACAAAATGATGATAGATTAGTTTTTTGAACTGATAAAAATTTTCTGTGAAGTACAAAAAGTAGAAAACTTGCCAGAAAGGGCAGAACTTGAGGAATCTTAAAATATATTAGCTCTCCATTCTAAATGTTTCTTTCAACTAATTATTGTTCAAAAGATTTGATAAATTCAGATTTTCTGAATAATAACAAAACCGGGAACATTATGATTCTGCTCGTTTTTATGATTTTGTGCACTTGGTTTCCTTATCAGTGACGAAGAACTGATTAAAATAGGAAAGAGGGATGAGTCGGGGGTCCACTGAAAAAGCATTTGTAGGTCTAAAAATTTGAGTCATAGATTTTTTGAAAGAATCGAAAGTTCTTAAA</canonical>
            <polymorphic>CGTGAAAAGTTTCGATCCCAACTGATTATATAGAATCGGAAGATCATGATGCTTGCAGGATCTTGGCATGCATACAGCGGATCGGAATGGAAGAGATGAAAATGGATTGTGGAATTTGGGTAATAAGGACATGTAGCAATAATTAGTGTCGTATTTGACACCACTGATCTGCTCGCATTCTTGGAAAGATCCCTCGAAAGTTGTGGAAAGTTCTAGAAGGCCTGGTTGGAGGAGACGACCGAAGGAGTCCAGTTCTAAATATATTAGGTGATTCTTGAAAAGAATTCTAAAGACTTACGCTGAACTGCAAAAAGATTCTCTTTTAATATTTTCGGATTACATTTTCCACCAGACATACAAATACTAGACTCGGCCAAAAACAATTCCAGTGATCCCAACCACAGTTTTGTTTCTTTGGTACATTGTGCGGAGACTCCAGTGTAATTCAAATGAGGAATAGTAGACAAAATCAAATCCTGAAATTCACTTAAAATTTTGARAAAAAAGAAATTACCCACCTGCCAGTCAGTATTTCTGGATGAAACCGTTAGAAAGACAAAAAATAAATTAAAAATTTTAATCATTTTCAACACTTTTTGACTTTGTGCCAGTTGATTTATATAGGTGTTGGGAGACAAAATGATGATAGATTAGTTTTTTGAACTGATAAAAATTTTCTGTGAAGTACAAAAAGTAGAAAACTTGCCAGAAAGGGCAGAACTTGAGGAATCTTAAAATATATTAGCTCTCCATTCTAAATGTTTCTTTCAACTAATTATTGTTCAAAAGATTTGATAAATTCAGATTTTCTGAATAATAACAAAACCGGGAACATTATGATTCTGCTCGTTTTTATGATTTTGTGCACTTGGTTTCCTTATCAGTGACGAAGAACTGATTAAAATAGGAAAGAGGGATGAGTCGGGGGTCCACTGAAAAAGCATTTGTAGGTCTAAAAATTTGAGTCATAGATTTTTTGAAAGAATCGAAAGTTCTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACTAGACTCGGCCAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTCAAAAAGTGTTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATACTAGACTCGGCCAAAAACAATTCCAGTGATCCCAACCACAGTTTTGTTTCTTTGGTACATTGTGCGGAGACTCCAGTGTAATTCAAATGAGGAATAGTAGACAAAATCAAATCCTGAAATTCACTTAAAATTTTGAGAAAAAAGAAATTACCCACCTGCCAGTCAGTATTTCTGGATGAAACCGTTAGAAAGACAAAAAATAAATTAAAAATTTTAATCATTTTCAACACTTTTTGACTTTG</canonical_amplicon>
		<polymorphic_amplicon>ATACTAGACTCGGCCAAAAACAATTCCAGTGATCCCAACCACAGTTTTGTTTCTTTGGTACATTGTGCGGAGACTCCAGTGTAATTCAAATGAGGAATAGTAGACAAAATCAAATCCTGAAATTCACTTAAAATTTTGARAAAAAAGAAATTACCCACCTGCCAGTCAGTATTTCTGGATGAAACCGTTAGAAAGACAAAAAATAAATTAAAAATTTTAATCATTTTCAACACTTTTTGACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22759</snp_id>
        <super_contig>c013801131.Contig1</super_contig>
        <contig_pos>29576</contig_pos>
        <strand>+</strand>
        <context>ACAAAATCAR[A/G]TCCTGAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTGCGGAGACTCCAGTGTAATTCAAATGAGGAATAGTAGACAAAATCAA</left_flank>
        <right_flank>TCCTGAAATTCACTTAAAATTTTGAGAAAAAAGAAATTACCCACCTGCCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATGAACACAAAAAGCAACTCTCGCCGTGAAAAGTTTCGATCCCAACTGATTATATAGAATCGGAAGATCATGATGCTTGCAGGATCTTGGCATGCATACAGCGGATCGGAATGGAAGAGATGAAAATGGATTGTGGAATTTGGGTAATAAGGACATGTAGCAATAATTAGTGTCGTATTTGACACCACTGATCTGCTCGCATTCTTGGAAAGATCCCTCGAAAGTTGTGGAAAGTTCTAGAAGGCCTGGTTGGAGGAGACGACCGAAGGAGTCCAGTTCTAAATATATTAGGTGATTCTTGAAAAGAATTCTAAAGACTTACGCTGAACTGCAAAAAGATTCTCTTTTAATATTTTCGGATTACATTTTCCACCAGACATACAAATACTAGACTCGGCCAAAAACAATTCCAGTGATCCCAACCACAGTTTTGTTTCTTTGGTACATTGTGCGGAGACTCCAGTGTAATTCAAATGAGGAATAGTAGACAAAATCAAATCCTGAAATTCACTTAAAATTTTGAGAAAAAAGAAATTACCCACCTGCCAGTCAGTATTTCTGGATGAAACCGTTAGAAAGACAAAAAATAAATTAAAAATTTTAATCATTTTCAACACTTTTTGACTTTGTGCCAGTTGATTTATATAGGTGTTGGGAGACAAAATGATGATAGATTAGTTTTTTGAACTGATAAAAATTTTCTGTGAAGTACAAAAAGTAGAAAACTTGCCAGAAAGGGCAGAACTTGAGGAATCTTAAAATATATTAGCTCTCCATTCTAAATGTTTCTTTCAACTAATTATTGTTCAAAAGATTTGATAAATTCAGATTTTCTGAATAATAACAAAACCGGGAACATTATGATTCTGCTCGTTTTTATGATTTTGTGCACTTGGTTTCCTTATCAGTGACGAAGAACTGATTAAAATAGGAAAGAGGGATGAGTCGGGGGTCCACTGAAAAAGCATTTGTAGGTCTAAAAATTTGAGTCATAGATT</canonical>
            <polymorphic>TGATGAACACAAAAAGCAACTCTCGCCGTGAAAAGTTTCGATCCCAACTGATTATATAGAATCGGAAGATCATGATGCTTGCAGGATCTTGGCATGCATACAGCGGATCGGAATGGAAGAGATGAAAATGGATTGTGGAATTTGGGTAATAAGGACATGTAGCAATAATTAGTGTCGTATTTGACACCACTGATCTGCTCGCATTCTTGGAAAGATCCCTCGAAAGTTGTGGAAAGTTCTAGAAGGCCTGGTTGGAGGAGACGACCGAAGGAGTCCAGTTCTAAATATATTAGGTGATTCTTGAAAAGAATTCTAAAGACTTACGCTGAACTGCAAAAAGATTCTCTTTTAATATTTTCGGATTACATTTTCCACCAGACATACAAATACTAGACTCGGCCAAAAACAATTCCAGTGATCCCAACCACAGTTTTGTTTCTTTGGTACATTGTGCGGAGACTCCAGTGTAATTCAAATGAGGAATAGTAGACAAAATCAARTCCTGAAATTCACTTAAAATTTTGAGAAAAAAGAAATTACCCACCTGCCAGTCAGTATTTCTGGATGAAACCGTTAGAAAGACAAAAAATAAATTAAAAATTTTAATCATTTTCAACACTTTTTGACTTTGTGCCAGTTGATTTATATAGGTGTTGGGAGACAAAATGATGATAGATTAGTTTTTTGAACTGATAAAAATTTTCTGTGAAGTACAAAAAGTAGAAAACTTGCCAGAAAGGGCAGAACTTGAGGAATCTTAAAATATATTAGCTCTCCATTCTAAATGTTTCTTTCAACTAATTATTGTTCAAAAGATTTGATAAATTCAGATTTTCTGAATAATAACAAAACCGGGAACATTATGATTCTGCTCGTTTTTATGATTTTGTGCACTTGGTTTCCTTATCAGTGACGAAGAACTGATTAAAATAGGAAAGAGGGATGAGTCGGGGGTCCACTGAAAAAGCATTTGTAGGTCTAAAAATTTGAGTCATAGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACTAGACTCGGCCAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTCAAAAAGTGTTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATACTAGACTCGGCCAAAAACAATTCCAGTGATCCCAACCACAGTTTTGTTTCTTTGGTACATTGTGCGGAGACTCCAGTGTAATTCAAATGAGGAATAGTAGACAAAATCAAATCCTGAAATTCACTTAAAATTTTGAGAAAAAAGAAATTACCCACCTGCCAGTCAGTATTTCTGGATGAAACCGTTAGAAAGACAAAAAATAAATTAAAAATTTTAATCATTTTCAACACTTTTTGACTTTG</canonical_amplicon>
		<polymorphic_amplicon>ATACTAGACTCGGCCAAAAACAATTCCAGTGATCCCAACCACAGTTTTGTTTCTTTGGTACATTGTGCGGAGACTCCAGTGTAATTCAAATGAGGAATAGTAGACAAAATCAARTCCTGAAATTCACTTAAAATTTTGAGAAAAAAGAAATTACCCACCTGCCAGTCAGTATTTCTGGATGAAACCGTTAGAAAGACAAAAAATAAATTAAAAATTTTAATCATTTTCAACACTTTTTGACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22760</snp_id>
        <super_contig>c013801131.Contig1</super_contig>
        <contig_pos>29575</contig_pos>
        <strand>+</strand>
        <context>GACAAAATCA[A/G]RTCCTGAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGTGCGGAGACTCCAGTGTAATTCAAATGAGGAATAGTAGACAAAATCA</left_flank>
        <right_flank>ATCCTGAAATTCACTTAAAATTTTGAGAAAAAAGAAATTACCCACCTGCC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGATGAACACAAAAAGCAACTCTCGCCGTGAAAAGTTTCGATCCCAACTGATTATATAGAATCGGAAGATCATGATGCTTGCAGGATCTTGGCATGCATACAGCGGATCGGAATGGAAGAGATGAAAATGGATTGTGGAATTTGGGTAATAAGGACATGTAGCAATAATTAGTGTCGTATTTGACACCACTGATCTGCTCGCATTCTTGGAAAGATCCCTCGAAAGTTGTGGAAAGTTCTAGAAGGCCTGGTTGGAGGAGACGACCGAAGGAGTCCAGTTCTAAATATATTAGGTGATTCTTGAAAAGAATTCTAAAGACTTACGCTGAACTGCAAAAAGATTCTCTTTTAATATTTTCGGATTACATTTTCCACCAGACATACAAATACTAGACTCGGCCAAAAACAATTCCAGTGATCCCAACCACAGTTTTGTTTCTTTGGTACATTGTGCGGAGACTCCAGTGTAATTCAAATGAGGAATAGTAGACAAAATCAAATCCTGAAATTCACTTAAAATTTTGAGAAAAAAGAAATTACCCACCTGCCAGTCAGTATTTCTGGATGAAACCGTTAGAAAGACAAAAAATAAATTAAAAATTTTAATCATTTTCAACACTTTTTGACTTTGTGCCAGTTGATTTATATAGGTGTTGGGAGACAAAATGATGATAGATTAGTTTTTTGAACTGATAAAAATTTTCTGTGAAGTACAAAAAGTAGAAAACTTGCCAGAAAGGGCAGAACTTGAGGAATCTTAAAATATATTAGCTCTCCATTCTAAATGTTTCTTTCAACTAATTATTGTTCAAAAGATTTGATAAATTCAGATTTTCTGAATAATAACAAAACCGGGAACATTATGATTCTGCTCGTTTTTATGATTTTGTGCACTTGGTTTCCTTATCAGTGACGAAGAACTGATTAAAATAGGAAAGAGGGATGAGTCGGGGGTCCACTGAAAAAGCATTTGTAGGTCTAAAAATTTGAGTCATAGAT</canonical>
            <polymorphic>TTGATGAACACAAAAAGCAACTCTCGCCGTGAAAAGTTTCGATCCCAACTGATTATATAGAATCGGAAGATCATGATGCTTGCAGGATCTTGGCATGCATACAGCGGATCGGAATGGAAGAGATGAAAATGGATTGTGGAATTTGGGTAATAAGGACATGTAGCAATAATTAGTGTCGTATTTGACACCACTGATCTGCTCGCATTCTTGGAAAGATCCCTCGAAAGTTGTGGAAAGTTCTAGAAGGCCTGGTTGGAGGAGACGACCGAAGGAGTCCAGTTCTAAATATATTAGGTGATTCTTGAAAAGAATTCTAAAGACTTACGCTGAACTGCAAAAAGATTCTCTTTTAATATTTTCGGATTACATTTTCCACCAGACATACAAATACTAGACTCGGCCAAAAACAATTCCAGTGATCCCAACCACAGTTTTGTTTCTTTGGTACATTGTGCGGAGACTCCAGTGTAATTCAAATGAGGAATAGTAGACAAAATCARATCCTGAAATTCACTTAAAATTTTGAGAAAAAAGAAATTACCCACCTGCCAGTCAGTATTTCTGGATGAAACCGTTAGAAAGACAAAAAATAAATTAAAAATTTTAATCATTTTCAACACTTTTTGACTTTGTGCCAGTTGATTTATATAGGTGTTGGGAGACAAAATGATGATAGATTAGTTTTTTGAACTGATAAAAATTTTCTGTGAAGTACAAAAAGTAGAAAACTTGCCAGAAAGGGCAGAACTTGAGGAATCTTAAAATATATTAGCTCTCCATTCTAAATGTTTCTTTCAACTAATTATTGTTCAAAAGATTTGATAAATTCAGATTTTCTGAATAATAACAAAACCGGGAACATTATGATTCTGCTCGTTTTTATGATTTTGTGCACTTGGTTTCCTTATCAGTGACGAAGAACTGATTAAAATAGGAAAGAGGGATGAGTCGGGGGTCCACTGAAAAAGCATTTGTAGGTCTAAAAATTTGAGTCATAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACTAGACTCGGCCAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTCAAAAAGTGTTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATACTAGACTCGGCCAAAAACAATTCCAGTGATCCCAACCACAGTTTTGTTTCTTTGGTACATTGTGCGGAGACTCCAGTGTAATTCAAATGAGGAATAGTAGACAAAATCAAATCCTGAAATTCACTTAAAATTTTGAGAAAAAAGAAATTACCCACCTGCCAGTCAGTATTTCTGGATGAAACCGTTAGAAAGACAAAAAATAAATTAAAAATTTTAATCATTTTCAACACTTTTTGACTTTG</canonical_amplicon>
		<polymorphic_amplicon>ATACTAGACTCGGCCAAAAACAATTCCAGTGATCCCAACCACAGTTTTGTTTCTTTGGTACATTGTGCGGAGACTCCAGTGTAATTCAAATGAGGAATAGTAGACAAAATCARATCCTGAAATTCACTTAAAATTTTGAGAAAAAAGAAATTACCCACCTGCCAGTCAGTATTTCTGGATGAAACCGTTAGAAAGACAAAAAATAAATTAAAAATTTTAATCATTTTCAACACTTTTTGACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22761</snp_id>
        <super_contig>c013801131.Contig1</super_contig>
        <contig_pos>29521</contig_pos>
        <strand>+</strand>
        <context>GTTTCTTTGG[A/T]ACATTGTGCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCGGCCAAAAACAATTCCAGTGATCCCAACCACAGTTTTGTTTCTTTGG</left_flank>
        <right_flank>ACATTGTGCGGAGACTCCAGTGTAATTCAAATGAGGAATAGTAGACAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACCCTTCTCAAACTAACGTAAATCCCCAAAACGCTGAATCCTTCTCAACATCTTGATGAACACAAAAAGCAACTCTCGCCGTGAAAAGTTTCGATCCCAACTGATTATATAGAATCGGAAGATCATGATGCTTGCAGGATCTTGGCATGCATACAGCGGATCGGAATGGAAGAGATGAAAATGGATTGTGGAATTTGGGTAATAAGGACATGTAGCAATAATTAGTGTCGTATTTGACACCACTGATCTGCTCGCATTCTTGGAAAGATCCCTCGAAAGTTGTGGAAAGTTCTAGAAGGCCTGGTTGGAGGAGACGACCGAAGGAGTCCAGTTCTAAATATATTAGGTGATTCTTGAAAAGAATTCTAAAGACTTACGCTGAACTGCAAAAAGATTCTCTTTTAATATTTTCGGATTACATTTTCCACCAGACATACAAATACTAGACTCGGCCAAAAACAATTCCAGTGATCCCAACCACAGTTTTGTTTCTTTGGTACATTGTGCGGAGACTCCAGTGTAATTCAAATGAGGAATAGTAGACAAAATCAAATCCTGAAATTCACTTAAAATTTTGAGAAAAAAGAAATTACCCACCTGCCAGTCAGTATTTCTGGATGAAACCGTTAGAAAGACAAAAAATAAATTAAAAATTTTAATCATTTTCAACACTTTTTGACTTTGTGCCAGTTGATTTATATAGGTGTTGGGAGACAAAATGATGATAGATTAGTTTTTTGAACTGATAAAAATTTTCTGTGAAGTACAAAAAGTAGAAAACTTGCCAGAAAGGGCAGAACTTGAGGAATCTTAAAATATATTAGCTCTCCATTCTAAATGTTTCTTTCAACTAATTATTGTTCAAAAGATTTGATAAATTCAGATTTTCTGAATAATAACAAAACCGGGAACATTATGATTCTGCTCGTTTTTATGATTTTGTGCACTTGGTTTCCTTATCAGTGACGAAGAACTGATTAAAATAGGAAAGAGGGATG</canonical>
            <polymorphic>CAACCCTTCTCAAACTAACGTAAATCCCCAAAACGCTGAATCCTTCTCAACATCTTGATGAACACAAAAAGCAACTCTCGCCGTGAAAAGTTTCGATCCCAACTGATTATATAGAATCGGAAGATCATGATGCTTGCAGGATCTTGGCATGCATACAGCGGATCGGAATGGAAGAGATGAAAATGGATTGTGGAATTTGGGTAATAAGGACATGTAGCAATAATTAGTGTCGTATTTGACACCACTGATCTGCTCGCATTCTTGGAAAGATCCCTCGAAAGTTGTGGAAAGTTCTAGAAGGCCTGGTTGGAGGAGACGACCGAAGGAGTCCAGTTCTAAATATATTAGGTGATTCTTGAAAAGAATTCTAAAGACTTACGCTGAACTGCAAAAAGATTCTCTTTTAATATTTTCGGATTACATTTTCCACCAGACATACAAATACTAGACTCGGCCAAAAACAATTCCAGTGATCCCAACCACAGTTTTGTTTCTTTGGWACATTGTGCGGAGACTCCAGTGTAATTCAAATGAGGAATAGTAGACAAAATCAAATCCTGAAATTCACTTAAAATTTTGAGAAAAAAGAAATTACCCACCTGCCAGTCAGTATTTCTGGATGAAACCGTTAGAAAGACAAAAAATAAATTAAAAATTTTAATCATTTTCAACACTTTTTGACTTTGTGCCAGTTGATTTATATAGGTGTTGGGAGACAAAATGATGATAGATTAGTTTTTTGAACTGATAAAAATTTTCTGTGAAGTACAAAAAGTAGAAAACTTGCCAGAAAGGGCAGAACTTGAGGAATCTTAAAATATATTAGCTCTCCATTCTAAATGTTTCTTTCAACTAATTATTGTTCAAAAGATTTGATAAATTCAGATTTTCTGAATAATAACAAAACCGGGAACATTATGATTCTGCTCGTTTTTATGATTTTGTGCACTTGGTTTCCTTATCAGTGACGAAGAACTGATTAAAATAGGAAAGAGGGATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 267 233</canonical_bands>
                <polymorphic_bands>767 233</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACTAGACTCGGCCAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTCAAAAAGTGTTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATACTAGACTCGGCCAAAAACAATTCCAGTGATCCCAACCACAGTTTTGTTTCTTTGGTACATTGTGCGGAGACTCCAGTGTAATTCAAATGAGGAATAGTAGACAAAATCAAATCCTGAAATTCACTTAAAATTTTGAGAAAAAAGAAATTACCCACCTGCCAGTCAGTATTTCTGGATGAAACCGTTAGAAAGACAAAAAATAAATTAAAAATTTTAATCATTTTCAACACTTTTTGACTTTG</canonical_amplicon>
		<polymorphic_amplicon>ATACTAGACTCGGCCAAAAACAATTCCAGTGATCCCAACCACAGTTTTGTTTCTTTGGWACATTGTGCGGAGACTCCAGTGTAATTCAAATGAGGAATAGTAGACAAAATCAAATCCTGAAATTCACTTAAAATTTTGAGAAAAAAGAAATTACCCACCTGCCAGTCAGTATTTCTGGATGAAACCGTTAGAAAGACAAAAAATAAATTAAAAATTTTAATCATTTTCAACACTTTTTGACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22762</snp_id>
        <super_contig>c013801131.Contig1</super_contig>
        <contig_pos>29429</contig_pos>
        <strand>+</strand>
        <context>TCTCTTTTAA[A/T]ATTTTCGGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAAGAATTCTAAAGACTTACGCTGAACTGCAAAAAGATTCTCTTTTAA</left_flank>
        <right_flank>ATTTTCGGATTACATTTTCCACCAGACATACAAATACTAGACTCGGCCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCAAAAAGTCCACAGTTGTAGCCAGAATCGAAATCGACACCATAACAATCATGAACACCCTGGAACTCGAAAGTTAAAGTCTCCCGTCTACAACCCTTCTCAAACTAACGTAAATCCCCAAAACGCTGAATCCTTCTCAACATCTTGATGAACACAAAAAGCAACTCTCGCCGTGAAAAGTTTCGATCCCAACTGATTATATAGAATCGGAAGATCATGATGCTTGCAGGATCTTGGCATGCATACAGCGGATCGGAATGGAAGAGATGAAAATGGATTGTGGAATTTGGGTAATAAGGACATGTAGCAATAATTAGTGTCGTATTTGACACCACTGATCTGCTCGCATTCTTGGAAAGATCCCTCGAAAGTTGTGGAAAGTTCTAGAAGGCCTGGTTGGAGGAGACGACCGAAGGAGTCCAGTTCTAAATATATTAGGTGATTCTTGAAAAGAATTCTAAAGACTTACGCTGAACTGCAAAAAGATTCTCTTTTAATATTTTCGGATTACATTTTCCACCAGACATACAAATACTAGACTCGGCCAAAAACAATTCCAGTGATCCCAACCACAGTTTTGTTTCTTTGGTACATTGTGCGGAGACTCCAGTGTAATTCAAATGAGGAATAGTAGACAAAATCAAATCCTGAAATTCACTTAAAATTTTGAGAAAAAAGAAATTACCCACCTGCCAGTCAGTATTTCTGGATGAAACCGTTAGAAAGACAAAAAATAAATTAAAAATTTTAATCATTTTCAACACTTTTTGACTTTGTGCCAGTTGATTTATATAGGTGTTGGGAGACAAAATGATGATAGATTAGTTTTTTGAACTGATAAAAATTTTCTGTGAAGTACAAAAAGTAGAAAACTTGCCAGAAAGGGCAGAACTTGAGGAATCTTAAAATATATTAGCTCTCCATTCTAAATGTTTCTTTCAACTAATTATTGTTCAAAAGATTTGATAAATTCAGATTTTCTGAATAATAACAAAACC</canonical>
            <polymorphic>TCTCAAAAAGTCCACAGTTGTAGCCAGAATCGAAATCGACACCATAACAATCATGAACACCCTGGAACTCGAAAGTTAAAGTCTCCCGTCTACAACCCTTCTCAAACTAACGTAAATCCCCAAAACGCTGAATCCTTCTCAACATCTTGATGAACACAAAAAGCAACTCTCGCCGTGAAAAGTTTCGATCCCAACTGATTATATAGAATCGGAAGATCATGATGCTTGCAGGATCTTGGCATGCATACAGCGGATCGGAATGGAAGAGATGAAAATGGATTGTGGAATTTGGGTAATAAGGACATGTAGCAATAATTAGTGTCGTATTTGACACCACTGATCTGCTCGCATTCTTGGAAAGATCCCTCGAAAGTTGTGGAAAGTTCTAGAAGGCCTGGTTGGAGGAGACGACCGAAGGAGTCCAGTTCTAAATATATTAGGTGATTCTTGAAAAGAATTCTAAAGACTTACGCTGAACTGCAAAAAGATTCTCTTTTAAWATTTTCGGATTACATTTTCCACCAGACATACAAATACTAGACTCGGCCAAAAACAATTCCAGTGATCCCAACCACAGTTTTGTTTCTTTGGTACATTGTGCGGAGACTCCAGTGTAATTCAAATGAGGAATAGTAGACAAAATCAAATCCTGAAATTCACTTAAAATTTTGAGAAAAAAGAAATTACCCACCTGCCAGTCAGTATTTCTGGATGAAACCGTTAGAAAGACAAAAAATAAATTAAAAATTTTAATCATTTTCAACACTTTTTGACTTTGTGCCAGTTGATTTATATAGGTGTTGGGAGACAAAATGATGATAGATTAGTTTTTTGAACTGATAAAAATTTTCTGTGAAGTACAAAAAGTAGAAAACTTGCCAGAAAGGGCAGAACTTGAGGAATCTTAAAATATATTAGCTCTCCATTCTAAATGTTTCTTTCAACTAATTATTGTTCAAAAGATTTGATAAATTCAGATTTTCTGAATAATAACAAAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCAATAATTAGTGTCGTATTTGA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTGGCCGAGTCTAGTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGCAATAATTAGTGTCGTATTTGACACCACTGATCTGCTCGCATTCTTGGAAAGATCCCTCGAAAGTTGTGGAAAGTTCTAGAAGGCCTGGTTGGAGGAGACGACCGAAGGAGTCCAGTTCTAAATATATTAGGTGATTCTTGAAAAGAATTCTAAAGACTTACGCTGAACTGCAAAAAGATTCTCTTTTAATATTTTCGGATTACATTTTCCACCAGACATACAAATACTAGACTCGGCCAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>AGCAATAATTAGTGTCGTATTTGACACCACTGATCTGCTCGCATTCTTGGAAAGATCCCTCGAAAGTTGTGGAAAGTTCTAGAAGGCCTGGTTGGAGGAGACGACCGAAGGAGTCCAGTTCTAAATATATTAGGTGATTCTTGAAAAGAATTCTAAAGACTTACGCTGAACTGCAAAAAGATTCTCTTTTAAWATTTTCGGATTACATTTTCCACCAGACATACAAATACTAGACTCGGCCAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22763</snp_id>
        <super_contig>c013801131.Contig1</super_contig>
        <contig_pos>88519</contig_pos>
        <strand></strand>
        <context>GAATGATTTA[C/T]ATAAGGTTAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCTGCAGTTTGCCTCACCAGCTACAGTATCCCGAATGGGAATGATTTA</left_flank>
        <right_flank>ATAAGGTTAGTGAAAATAAAAAAAAATCTAGGTCATGACCTAGAAAAATC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGCGCCTATTGCGTGCTTTCACGCTAATTATCTCGGTTACTGTGAGAGAAATCAAAAAGTGGTAAACTGATAGAATGTTTATCTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGGGGGACGAAATCCCGCCTCGCTTATGTAGACCATCGGTCGTCAGCCGCCTTCGCGCCCCCGTAGCTCAGCCGGTAGTGGCGCTGTACCCCTGAGCTGCCTGTCATGGGTTCAACCCCTCATGGGGGTTCTCTATGCAAAATATCAGGAAAACTTTTTTTTTGATGTCTGGCCTCCTTTAAAATTCCTAACATTTTATCAGTTGACAACTTTTTGATATTTATTACAGGAACCGAGATAATCAATATCTTCTTTTTCAGCTCACAATGCCGTCTGGAGAGCGAATTCAATTCGGGTCCAACGTGAATTTCCTCTTCGAAACCGACTCTCTGCAGTTTGCCTCACCAGCTACAGTATCCCGAATGGGAATGATTTACATAAGGTTAGTGAAAATAAAAAAAAATCTAGGTCATGACCTAGAAAAATCTAGGTCACGGCTCAAAAAAATCTAAATCATGACCTAAAAAATCTAGGCCATAACCTAAAAAATCTAGGTCATGACCTAACAAAAAAATCTAGATCATGACCTAGAAAAATCTAGGTCACGGCCTGGAAAAATCTAGGTCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAATCTAGGCCATAACCTAAAAAATCTAGGTCATGACCTAACAAAAAATCTAGATCATGACCTAGAAAAATCTAGGTCATGACCTAAAGAAATCTAGGTCATGACCTAGAAAAATTCAGGTAGTGACCTAAAAAAATCTAGGTCATGGCCTAGAAAAATATGAAATCTAGGTCATGACCTAAAAAAATCTAGGTCGTGACCTAGATTTTTAAAAAAATTTCTCAATTTTTAGCGAAGAAGACGTGAAACCTCAAGGCATCGTTGCGAGTTGGCTCGCAA</canonical>
            <polymorphic>CGGCGCCTATTGCGTGCTTTCACGCTAATTATCTCGGTTACTGTGAGAGAAATCAAAAAGTGGTAAACTGATAGAATGTTTATCTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGGGGGACGAAATCCCGCCTCGCTTATGTAGACCATCGGTCGTCAGCCGCCTTCGCGCCCCCGTAGCTCAGCCGGTAGTGGCGCTGTACCCCTGAGCTGCCTGTCATGGGTTCAACCCCTCATGGGGGTTCTCTATGCAAAATATCAGGAAAACTTTTTTTTTGATGTCTGGCCTCCTTTAAAATTCCTAACATTTTATCAGTTGACAACTTTTTGATATTTATTACAGGAACCGAGATAATCAATATCTTCTTTTTCAGCTCACAATGCCGTCTGGAGAGCGAATTCAATTCGGGTCCAACGTGAATTTCCTCTTCGAAACCGACTCTCTGCAGTTTGCCTCACCAGCTACAGTATCCCGAATGGGAATGATTTAYATAAGGTTAGTGAAAATAAAAAAAAATCTAGGTCATGACCTAGAAAAATCTAGGTCACGGCTCAAAAAAATCTAAATCATGACCTAAAAAATCTAGGCCATAACCTAAAAAATCTAGGTCATGACCTAACAAAAAAATCTAGATCATGACCTAGAAAAATCTAGGTCACGGCCTGGAAAAATCTAGGTCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAATCTAGGCCATAACCTAAAAAATCTAGGTCATGACCTAACAAAAAATCTAGATCATGACCTAGAAAAATCTAGGTCATGACCTAAAGAAATCTAGGTCATGACCTAGAAAAATTCAGGTAGTGACCTAAAAAAATCTAGGTCATGGCCTAGAAAAATATGAAATCTAGGTCATGACCTAAAAAAATCTAGGTCGTGACCTAGATTTTTAAAAAAATTTCTCAATTTTTAGCGAAGAAGACGTGAAACCTCAAGGCATCGTTGCGAGTTGGCTCGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTTCGAAACCGACTCTCT</pcr_primer_p1>
		<pcr_primer_p2>TCTTCGCTAAAAATTGAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>525</pcr_amplicon_size>
		<canonical_amplicon>CTCTTCGAAACCGACTCTCTGCAGTTTGCCTCACCAGCTACAGTATCCCGAATGGGAATGATTTACATAAGGTTAGTGAAAATAAAAAAAAATCTAGGTCATGACCTAGAAAAATCTAGGTCACGGCTCAAAAAAATCTAAATCATGACCTAAAAAATCTAGGCCATAACCTAAAAAATCTAGGTCATGACCTAACAAAAAAATCTAGATCATGACCTAGAAAAATCTAGGTCACGGCCTGGAAAAATCTAGGTCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAATCTAGGCCATAACCTAAAAAATCTAGGTCATGACCTAACAAAAAATCTAGATCATGACCTAGAAAAATCTAGGTCATGACCTAAAGAAATCTAGGTCATGACCTAGAAAAATTCAGGTAGTGACCTAAAAAAATCTAGGTCATGGCCTAGAAAAATATGAAATCTAGGTCATGACCTAAAAAAATCTAGGTCGTGACCTAGATTTTTAAAAAAATTTCTCAATTTTTAGCGAAGA</canonical_amplicon>
		<polymorphic_amplicon>CTCTTCGAAACCGACTCTCTGCAGTTTGCCTCACCAGCTACAGTATCCCGAATGGGAATGATTTAYATAAGGTTAGTGAAAATAAAAAAAAATCTAGGTCATGACCTAGAAAAATCTAGGTCACGGCTCAAAAAAATCTAAATCATGACCTAAAAAATCTAGGCCATAACCTAAAAAATCTAGGTCATGACCTAACAAAAAAATCTAGATCATGACCTAGAAAAATCTAGGTCACGGCCTGGAAAAATCTAGGTCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAATCTAGGCCATAACCTAAAAAATCTAGGTCATGACCTAACAAAAAATCTAGATCATGACCTAGAAAAATCTAGGTCATGACCTAAAGAAATCTAGGTCATGACCTAGAAAAATTCAGGTAGTGACCTAAAAAAATCTAGGTCATGGCCTAGAAAAATATGAAATCTAGGTCATGACCTAAAAAAATCTAGGTCGTGACCTAGATTTTTAAAAAAATTTCTCAATTTTTAGCGAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22764</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>65399</contig_pos>
        <strand>+</strand>
        <context>GGYCATCTAT[A/G]GTACACtaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGCCTAGAAACCTTTCTCAGACATCCTGACTCGATTCTAGGCCATCTAT</left_flank>
        <right_flank>GTACACTAAAATGACCCCCTTGGCTTTCAACTTTGAGCCCATATATCTCG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCTCAAAATCCTGGCAAAAAAAGAAGAGACAAAAGAAGAAGTTATGAATGCGTGGGAGTTTCGGGGGGGATTCCCCATAGAAAAAGTATAGCAAAAAGGGGAGGATCCTATTGAAATCTGTGGGTGGGAGGGGAGAGGAGAGTGCAAGTGACGCCTAGTTAATAGAGTTGAGAAGAAGATGTTTCAAAATAGAGTGACACACGAAAGGATAAGAGCTGAAACAGATGCCACGTGGCGAATCGGGATCAATCTGGGATCATTGAAATCCTATTCGTCGGAATCGGAAGGCCTAGAAAACCTTCTGAGATTCTAGGCCATCTACGGTACACTATAAAATAAAATGACCCCTTGTGGACTCTAGTGGTTGGACAGGTATTCTTACTGTCAATTGGGGAGAATCTTGTGATCTGGAAAGTGATCTTGTGGGGCCTATAATTCAATTGGTGGTGGCCTAGAAACCTTTCTCAGACATCCTGACTCGATTCTAGGCCATCTATGGTACACTAAAATGACCCCCTTGGCTTTCAACTTTGAGCCCATATATCTCGCTTGCTGTAAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCACAATAACATCAACATTTTATCAGTTGACAAGTTTTTGATATCATTCACAGGAATCGAGATACAGTACCTGGAGCTCGGCTGTCCGGTTTCCGATCACTTTGAAAAAACTTTGGAGGGTGTGAAAATGACTAATCGGGCGATTTCGATCGATTTCCGATTTTGTACTCCTCGTGGACAAGTCCGACGCACGAAATTTGAATTTTTGGGTTGAAATGCAGCTTAAAACGCGATTTTCGGTGCAAAGATGCTTACGGGAATCGGGATTTTACGCAATTTAAAATATTCCTAACAACTCCATGCTATCCTTTGATCTAGATACTCAGTTTTAGTGTCATTTCCTATCAACTAGACCCTTTAGTACCGCCCAAAAGTGCGCACAAGCTCTTAGGCTTTTAAATAGA</canonical>
            <polymorphic>AAGCTCAAAATCCTGGCAAAAAAAGAAGAGACAAAAGAAGAAGTTATGAATGCGTGGGAGTTTCGGGGGGGATTCCCCATAGAAAAAGTATAGCAAAAAGGGGAGGATCCTATTGAAATCTGTGGGTGGGAGGGGAGAGGAGAGTGCAAGTGACGCCTAGTTAATAGAGTTGAGAAGAAGATGTTTCAAAATAGAGTGACACACGAAAGGATAAGAGCTGAAACAGATGCCACGTGGCGAATCGGGATCAATCTGGGATCATTGAAATCCTATTCGTCGGAATCGGAAGGCCTAGAAAACCTTCTGAGATTCTAGGCCATCTACGGTACACTATAAAATAAAATGACCCCTTGTGGACTCTAGTGGTTGGACAGGTATTCTTACTGTCAATTGGGGAGAATCTTGTGATCTGGAAAGTGATCTTGTGGGGCCTATAATTCAATTGGTGGTGGCCTAGAAACCTTTCTCAGACATCCTGACTCGATTCTAGGCCATCTATRGTACACTAAAATGACCCCCTTGGCTTTCAACTTTGAGCCCATATATCTCGCTTGCTGTAAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCACAATAACATCAACATTTTATCAGTTGACAAGTTTTTGATATCATTCACAGGAATCGAGATACAGTACCTGGAGCTCGGCTGTCCGGTTTCCGATCACTTTGAAAAAACTTTGGAGGGTGTGAAAATGACTAATCGGGCGATTTCGATCGATTTCCGATTTTGTACTCCTCGTGGACAAGTCCGACGCACGAAATTTGAATTTTTGGGTTGAAATGCAGCTTAAAACGCGATTTTCGGTGCAAAGATGCTTACGGGAATCGGGATTTTACGCAATTTAAAATATTCCTAACAACTCCATGCTATCCTTTGATCTAGATACTCAGTTTTAGTGTCATTTCCTATCAACTAGACCCTTTAGTACCGCCCAAAAGTGCGCACAAGCTCTTAGGCTTTTAAATAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCTATAATTCAATTGGTGGT</pcr_primer_p1>
		<pcr_primer_p2>GGAATATTTTAAATTGCGTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>456</pcr_amplicon_size>
		<canonical_amplicon>GCCTATAATTCAATTGGTGGTGGCCTAGAAACCTTTCTCAGACATCCTGACTCGATTCTAGGCCATCTATGGTACACTAAAATGACCCCCTTGGCTTTCAACTTTGAGCCCATATATCTCGCTTGCTGTAAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCACAATAACATCAACATTTTATCAGTTGACAAGTTTTTGATATCATTCACAGGAATCGAGATACAGTACCTGGAGCTCGGCTGTCCGGTTTCCGATCACTTTGAAAAAACTTTGGAGGGTGTGAAAATGACTAATCGGGCGATTTCGATCGATTTCCGATTTTGTACTCCTCGTGGACAAGTCCGACGCACGAAATTTGAATTTTTGGGTTGAAATGCAGCTTAAAACGCGATTTTCGGTGCAAAGATGCTTACGGGAATCGGGATTTTACGCAATTTAAAATATTCC</canonical_amplicon>
		<polymorphic_amplicon>GCCTATAATTCAATTGGTGGTGGCCTAGAAACCTTTCTCAGACATCCTGACTCGATTCTAGGCCATCTATRGTACACTAAAATGACCCCCTTGGCTTTCAACTTTGAGCCCATATATCTCGCTTGCTGTAAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCACAATAACATCAACATTTTATCAGTTGACAAGTTTTTGATATCATTCACAGGAATCGAGATACAGTACCTGGAGCTCGGCTGTCCGGTTTCCGATCACTTTGAAAAAACTTTGGAGGGTGTGAAAATGACTAATCGGGCGATTTCGATCGATTTCCGATTTTGTACTCCTCGTGGACAAGTCCGACGCACGAAATTTGAATTTTTGGGTTGAAATGCAGCTTAAAACGCGATTTTCGGTGCAAAGATGCTTACGGGAATCGGGATTTTACGCAATTTAAAATATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22765</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>65391</contig_pos>
        <strand>+</strand>
        <context>CGATTCTAGG[C/T]CATCTATRGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGGTGGTGGCCTAGAAACCTTTCTCAGACATCCTGACTCGATTCTAGG</left_flank>
        <right_flank>CATCTATGGTACACTAAAATGACCCCCTTGGCTTTCAACTTTGAGCCCAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACTGAAAAGCTCAAAATCCTGGCAAAAAAAGAAGAGACAAAAGAAGAAGTTATGAATGCGTGGGAGTTTCGGGGGGGATTCCCCATAGAAAAAGTATAGCAAAAAGGGGAGGATCCTATTGAAATCTGTGGGTGGGAGGGGAGAGGAGAGTGCAAGTGACGCCTAGTTAATAGAGTTGAGAAGAAGATGTTTCAAAATAGAGTGACACACGAAAGGATAAGAGCTGAAACAGATGCCACGTGGCGAATCGGGATCAATCTGGGATCATTGAAATCCTATTCGTCGGAATCGGAAGGCCTAGAAAACCTTCTGAGATTCTAGGCCATCTACGGTACACTATAAAATAAAATGACCCCTTGTGGACTCTAGTGGTTGGACAGGTATTCTTACTGTCAATTGGGGAGAATCTTGTGATCTGGAAAGTGATCTTGTGGGGCCTATAATTCAATTGGTGGTGGCCTAGAAACCTTTCTCAGACATCCTGACTCGATTCTAGGCCATCTATGGTACACTAAAATGACCCCCTTGGCTTTCAACTTTGAGCCCATATATCTCGCTTGCTGTAAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCACAATAACATCAACATTTTATCAGTTGACAAGTTTTTGATATCATTCACAGGAATCGAGATACAGTACCTGGAGCTCGGCTGTCCGGTTTCCGATCACTTTGAAAAAACTTTGGAGGGTGTGAAAATGACTAATCGGGCGATTTCGATCGATTTCCGATTTTGTACTCCTCGTGGACAAGTCCGACGCACGAAATTTGAATTTTTGGGTTGAAATGCAGCTTAAAACGCGATTTTCGGTGCAAAGATGCTTACGGGAATCGGGATTTTACGCAATTTAAAATATTCCTAACAACTCCATGCTATCCTTTGATCTAGATACTCAGTTTTAGTGTCATTTCCTATCAACTAGACCCTTTAGTACCGCCCAAAAGTGCGCACAAGCTCTTAGGCTTT</canonical>
            <polymorphic>ACACTGAAAAGCTCAAAATCCTGGCAAAAAAAGAAGAGACAAAAGAAGAAGTTATGAATGCGTGGGAGTTTCGGGGGGGATTCCCCATAGAAAAAGTATAGCAAAAAGGGGAGGATCCTATTGAAATCTGTGGGTGGGAGGGGAGAGGAGAGTGCAAGTGACGCCTAGTTAATAGAGTTGAGAAGAAGATGTTTCAAAATAGAGTGACACACGAAAGGATAAGAGCTGAAACAGATGCCACGTGGCGAATCGGGATCAATCTGGGATCATTGAAATCCTATTCGTCGGAATCGGAAGGCCTAGAAAACCTTCTGAGATTCTAGGCCATCTACGGTACACTATAAAATAAAATGACCCCTTGTGGACTCTAGTGGTTGGACAGGTATTCTTACTGTCAATTGGGGAGAATCTTGTGATCTGGAAAGTGATCTTGTGGGGCCTATAATTCAATTGGTGGTGGCCTAGAAACCTTTCTCAGACATCCTGACTCGATTCTAGGYCATCTATGGTACACTAAAATGACCCCCTTGGCTTTCAACTTTGAGCCCATATATCTCGCTTGCTGTAAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCACAATAACATCAACATTTTATCAGTTGACAAGTTTTTGATATCATTCACAGGAATCGAGATACAGTACCTGGAGCTCGGCTGTCCGGTTTCCGATCACTTTGAAAAAACTTTGGAGGGTGTGAAAATGACTAATCGGGCGATTTCGATCGATTTCCGATTTTGTACTCCTCGTGGACAAGTCCGACGCACGAAATTTGAATTTTTGGGTTGAAATGCAGCTTAAAACGCGATTTTCGGTGCAAAGATGCTTACGGGAATCGGGATTTTACGCAATTTAAAATATTCCTAACAACTCCATGCTATCCTTTGATCTAGATACTCAGTTTTAGTGTCATTTCCTATCAACTAGACCCTTTAGTACCGCCCAAAAGTGCGCACAAGCTCTTAGGCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 298 114 39 26 22</canonical_bands>
                <polymorphic_bands>540 298 114 26 22</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>214 163 140 135 114 73 39 32 26 22 14 11 8 5 4</canonical_bands>
                <polymorphic_bands>214 163 140 135 114 73 71 26 22 14 11 8 5 4</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 298 136 39 26</canonical_bands>
                <polymorphic_bands>540 298 136 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCTATAATTCAATTGGTGGT</pcr_primer_p1>
		<pcr_primer_p2>GGAATATTTTAAATTGCGTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>456</pcr_amplicon_size>
		<canonical_amplicon>GCCTATAATTCAATTGGTGGTGGCCTAGAAACCTTTCTCAGACATCCTGACTCGATTCTAGGCCATCTATGGTACACTAAAATGACCCCCTTGGCTTTCAACTTTGAGCCCATATATCTCGCTTGCTGTAAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCACAATAACATCAACATTTTATCAGTTGACAAGTTTTTGATATCATTCACAGGAATCGAGATACAGTACCTGGAGCTCGGCTGTCCGGTTTCCGATCACTTTGAAAAAACTTTGGAGGGTGTGAAAATGACTAATCGGGCGATTTCGATCGATTTCCGATTTTGTACTCCTCGTGGACAAGTCCGACGCACGAAATTTGAATTTTTGGGTTGAAATGCAGCTTAAAACGCGATTTTCGGTGCAAAGATGCTTACGGGAATCGGGATTTTACGCAATTTAAAATATTCC</canonical_amplicon>
		<polymorphic_amplicon>GCCTATAATTCAATTGGTGGTGGCCTAGAAACCTTTCTCAGACATCCTGACTCGATTCTAGGYCATCTATGGTACACTAAAATGACCCCCTTGGCTTTCAACTTTGAGCCCATATATCTCGCTTGCTGTAAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCACAATAACATCAACATTTTATCAGTTGACAAGTTTTTGATATCATTCACAGGAATCGAGATACAGTACCTGGAGCTCGGCTGTCCGGTTTCCGATCACTTTGAAAAAACTTTGGAGGGTGTGAAAATGACTAATCGGGCGATTTCGATCGATTTCCGATTTTGTACTCCTCGTGGACAAGTCCGACGCACGAAATTTGAATTTTTGGGTTGAAATGCAGCTTAAAACGCGATTTTCGGTGCAAAGATGCTTACGGGAATCGGGATTTTACGCAATTTAAAATATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22766</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>65372</contig_pos>
        <strand>+</strand>
        <context>TTTCTCAGAC[A/C]TCCTGACTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGTGGGGCCTATAATTCAATTGGTGGTGGCCTAGAAACCTTTCTCAGAC</left_flank>
        <right_flank>TCCTGACTCGATTCTAGGCCATCTATGGTACACTAAAATGACCCCCTTGG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTGGGCTATTTCGGAACACTGAAAAGCTCAAAATCCTGGCAAAAAAAGAAGAGACAAAAGAAGAAGTTATGAATGCGTGGGAGTTTCGGGGGGGATTCCCCATAGAAAAAGTATAGCAAAAAGGGGAGGATCCTATTGAAATCTGTGGGTGGGAGGGGAGAGGAGAGTGCAAGTGACGCCTAGTTAATAGAGTTGAGAAGAAGATGTTTCAAAATAGAGTGACACACGAAAGGATAAGAGCTGAAACAGATGCCACGTGGCGAATCGGGATCAATCTGGGATCATTGAAATCCTATTCGTCGGAATCGGAAGGCCTAGAAAACCTTCTGAGATTCTAGGCCATCTACGGTACACTATAAAATAAAATGACCCCTTGTGGACTCTAGTGGTTGGACAGGTATTCTTACTGTCAATTGGGGAGAATCTTGTGATCTGGAAAGTGATCTTGTGGGGCCTATAATTCAATTGGTGGTGGCCTAGAAACCTTTCTCAGACATCCTGACTCGATTCTAGGCCATCTATGGTACACTAAAATGACCCCCTTGGCTTTCAACTTTGAGCCCATATATCTCGCTTGCTGTAAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCACAATAACATCAACATTTTATCAGTTGACAAGTTTTTGATATCATTCACAGGAATCGAGATACAGTACCTGGAGCTCGGCTGTCCGGTTTCCGATCACTTTGAAAAAACTTTGGAGGGTGTGAAAATGACTAATCGGGCGATTTCGATCGATTTCCGATTTTGTACTCCTCGTGGACAAGTCCGACGCACGAAATTTGAATTTTTGGGTTGAAATGCAGCTTAAAACGCGATTTTCGGTGCAAAGATGCTTACGGGAATCGGGATTTTACGCAATTTAAAATATTCCTAACAACTCCATGCTATCCTTTGATCTAGATACTCAGTTTTAGTGTCATTTCCTATCAACTAGACCCTTTAGTACCGCCCAAAAGTGC</canonical>
            <polymorphic>ATTTTTGGGCTATTTCGGAACACTGAAAAGCTCAAAATCCTGGCAAAAAAAGAAGAGACAAAAGAAGAAGTTATGAATGCGTGGGAGTTTCGGGGGGGATTCCCCATAGAAAAAGTATAGCAAAAAGGGGAGGATCCTATTGAAATCTGTGGGTGGGAGGGGAGAGGAGAGTGCAAGTGACGCCTAGTTAATAGAGTTGAGAAGAAGATGTTTCAAAATAGAGTGACACACGAAAGGATAAGAGCTGAAACAGATGCCACGTGGCGAATCGGGATCAATCTGGGATCATTGAAATCCTATTCGTCGGAATCGGAAGGCCTAGAAAACCTTCTGAGATTCTAGGCCATCTACGGTACACTATAAAATAAAATGACCCCTTGTGGACTCTAGTGGTTGGACAGGTATTCTTACTGTCAATTGGGGAGAATCTTGTGATCTGGAAAGTGATCTTGTGGGGCCTATAATTCAATTGGTGGTGGCCTAGAAACCTTTCTCAGACMTCCTGACTCGATTCTAGGCCATCTATGGTACACTAAAATGACCCCCTTGGCTTTCAACTTTGAGCCCATATATCTCGCTTGCTGTAAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCACAATAACATCAACATTTTATCAGTTGACAAGTTTTTGATATCATTCACAGGAATCGAGATACAGTACCTGGAGCTCGGCTGTCCGGTTTCCGATCACTTTGAAAAAACTTTGGAGGGTGTGAAAATGACTAATCGGGCGATTTCGATCGATTTCCGATTTTGTACTCCTCGTGGACAAGTCCGACGCACGAAATTTGAATTTTTGGGTTGAAATGCAGCTTAAAACGCGATTTTCGGTGCAAAGATGCTTACGGGAATCGGGATTTTACGCAATTTAAAATATTCCTAACAACTCCATGCTATCCTTTGATCTAGATACTCAGTTTTAGTGTCATTTCCTATCAACTAGACCCTTTAGTACCGCCCAAAAGTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCTTGTGGGGCCTATAAT</pcr_primer_p1>
		<pcr_primer_p2>GGAATATTTTAAATTGCGTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>467</pcr_amplicon_size>
		<canonical_amplicon>GATCTTGTGGGGCCTATAATTCAATTGGTGGTGGCCTAGAAACCTTTCTCAGACATCCTGACTCGATTCTAGGCCATCTATGGTACACTAAAATGACCCCCTTGGCTTTCAACTTTGAGCCCATATATCTCGCTTGCTGTAAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCACAATAACATCAACATTTTATCAGTTGACAAGTTTTTGATATCATTCACAGGAATCGAGATACAGTACCTGGAGCTCGGCTGTCCGGTTTCCGATCACTTTGAAAAAACTTTGGAGGGTGTGAAAATGACTAATCGGGCGATTTCGATCGATTTCCGATTTTGTACTCCTCGTGGACAAGTCCGACGCACGAAATTTGAATTTTTGGGTTGAAATGCAGCTTAAAACGCGATTTTCGGTGCAAAGATGCTTACGGGAATCGGGATTTTACGCAATTTAAAATATTCC</canonical_amplicon>
		<polymorphic_amplicon>GATCTTGTGGGGCCTATAATTCAATTGGTGGTGGCCTAGAAACCTTTCTCAGACMTCCTGACTCGATTCTAGGCCATCTATGGTACACTAAAATGACCCCCTTGGCTTTCAACTTTGAGCCCATATATCTCGCTTGCTGTAAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCACAATAACATCAACATTTTATCAGTTGACAAGTTTTTGATATCATTCACAGGAATCGAGATACAGTACCTGGAGCTCGGCTGTCCGGTTTCCGATCACTTTGAAAAAACTTTGGAGGGTGTGAAAATGACTAATCGGGCGATTTCGATCGATTTCCGATTTTGTACTCCTCGTGGACAAGTCCGACGCACGAAATTTGAATTTTTGGGTTGAAATGCAGCTTAAAACGCGATTTTCGGTGCAAAGATGCTTACGGGAATCGGGATTTTACGCAATTTAAAATATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22767</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>65357</contig_pos>
        <strand>+</strand>
        <context>GGTGGCCTAG[A/G]AACCTTTCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCTGGAAAGTGATCTTGTGGGGCCTATAATTCAATTGGTGGTGGCCTAG</left_flank>
        <right_flank>AACCTTTCTCAGACATCCTGACTCGATTCTAGGCCATCTATGGTACACTA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCACGCCACACTGAAATTTTTGGGCTATTTCGGAACACTGAAAAGCTCAAAATCCTGGCAAAAAAAGAAGAGACAAAAGAAGAAGTTATGAATGCGTGGGAGTTTCGGGGGGGATTCCCCATAGAAAAAGTATAGCAAAAAGGGGAGGATCCTATTGAAATCTGTGGGTGGGAGGGGAGAGGAGAGTGCAAGTGACGCCTAGTTAATAGAGTTGAGAAGAAGATGTTTCAAAATAGAGTGACACACGAAAGGATAAGAGCTGAAACAGATGCCACGTGGCGAATCGGGATCAATCTGGGATCATTGAAATCCTATTCGTCGGAATCGGAAGGCCTAGAAAACCTTCTGAGATTCTAGGCCATCTACGGTACACTATAAAATAAAATGACCCCTTGTGGACTCTAGTGGTTGGACAGGTATTCTTACTGTCAATTGGGGAGAATCTTGTGATCTGGAAAGTGATCTTGTGGGGCCTATAATTCAATTGGTGGTGGCCTAGAAACCTTTCTCAGACATCCTGACTCGATTCTAGGCCATCTATGGTACACTAAAATGACCCCCTTGGCTTTCAACTTTGAGCCCATATATCTCGCTTGCTGTAAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCACAATAACATCAACATTTTATCAGTTGACAAGTTTTTGATATCATTCACAGGAATCGAGATACAGTACCTGGAGCTCGGCTGTCCGGTTTCCGATCACTTTGAAAAAACTTTGGAGGGTGTGAAAATGACTAATCGGGCGATTTCGATCGATTTCCGATTTTGTACTCCTCGTGGACAAGTCCGACGCACGAAATTTGAATTTTTGGGTTGAAATGCAGCTTAAAACGCGATTTTCGGTGCAAAGATGCTTACGGGAATCGGGATTTTACGCAATTTAAAATATTCCTAACAACTCCATGCTATCCTTTGATCTAGATACTCAGTTTTAGTGTCATTTCCTATCAACTAGACCCTTTAGT</canonical>
            <polymorphic>CCACGCCACACTGAAATTTTTGGGCTATTTCGGAACACTGAAAAGCTCAAAATCCTGGCAAAAAAAGAAGAGACAAAAGAAGAAGTTATGAATGCGTGGGAGTTTCGGGGGGGATTCCCCATAGAAAAAGTATAGCAAAAAGGGGAGGATCCTATTGAAATCTGTGGGTGGGAGGGGAGAGGAGAGTGCAAGTGACGCCTAGTTAATAGAGTTGAGAAGAAGATGTTTCAAAATAGAGTGACACACGAAAGGATAAGAGCTGAAACAGATGCCACGTGGCGAATCGGGATCAATCTGGGATCATTGAAATCCTATTCGTCGGAATCGGAAGGCCTAGAAAACCTTCTGAGATTCTAGGCCATCTACGGTACACTATAAAATAAAATGACCCCTTGTGGACTCTAGTGGTTGGACAGGTATTCTTACTGTCAATTGGGGAGAATCTTGTGATCTGGAAAGTGATCTTGTGGGGCCTATAATTCAATTGGTGGTGGCCTAGRAACCTTTCTCAGACATCCTGACTCGATTCTAGGCCATCTATGGTACACTAAAATGACCCCCTTGGCTTTCAACTTTGAGCCCATATATCTCGCTTGCTGTAAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCACAATAACATCAACATTTTATCAGTTGACAAGTTTTTGATATCATTCACAGGAATCGAGATACAGTACCTGGAGCTCGGCTGTCCGGTTTCCGATCACTTTGAAAAAACTTTGGAGGGTGTGAAAATGACTAATCGGGCGATTTCGATCGATTTCCGATTTTGTACTCCTCGTGGACAAGTCCGACGCACGAAATTTGAATTTTTGGGTTGAAATGCAGCTTAAAACGCGATTTTCGGTGCAAAGATGCTTACGGGAATCGGGATTTTACGCAATTTAAAATATTCCTAACAACTCCATGCTATCCTTTGATCTAGATACTCAGTTTTAGTGTCATTTCCTATCAACTAGACCCTTTAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>497 341 162</canonical_bands>
                <polymorphic_bands>659 341</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGATCTGGAAAGTGATCTTGT</pcr_primer_p1>
		<pcr_primer_p2>GGAATATTTTAAATTGCGTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>481</pcr_amplicon_size>
		<canonical_amplicon>GTGATCTGGAAAGTGATCTTGTGGGGCCTATAATTCAATTGGTGGTGGCCTAGAAACCTTTCTCAGACATCCTGACTCGATTCTAGGCCATCTATGGTACACTAAAATGACCCCCTTGGCTTTCAACTTTGAGCCCATATATCTCGCTTGCTGTAAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCACAATAACATCAACATTTTATCAGTTGACAAGTTTTTGATATCATTCACAGGAATCGAGATACAGTACCTGGAGCTCGGCTGTCCGGTTTCCGATCACTTTGAAAAAACTTTGGAGGGTGTGAAAATGACTAATCGGGCGATTTCGATCGATTTCCGATTTTGTACTCCTCGTGGACAAGTCCGACGCACGAAATTTGAATTTTTGGGTTGAAATGCAGCTTAAAACGCGATTTTCGGTGCAAAGATGCTTACGGGAATCGGGATTTTACGCAATTTAAAATATTCC</canonical_amplicon>
		<polymorphic_amplicon>GTGATCTGGAAAGTGATCTTGTGGGGCCTATAATTCAATTGGTGGTGGCCTAGRAACCTTTCTCAGACATCCTGACTCGATTCTAGGCCATCTATGGTACACTAAAATGACCCCCTTGGCTTTCAACTTTGAGCCCATATATCTCGCTTGCTGTAAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCACAATAACATCAACATTTTATCAGTTGACAAGTTTTTGATATCATTCACAGGAATCGAGATACAGTACCTGGAGCTCGGCTGTCCGGTTTCCGATCACTTTGAAAAAACTTTGGAGGGTGTGAAAATGACTAATCGGGCGATTTCGATCGATTTCCGATTTTGTACTCCTCGTGGACAAGTCCGACGCACGAAATTTGAATTTTTGGGTTGAAATGCAGCTTAAAACGCGATTTTCGGTGCAAAGATGCTTACGGGAATCGGGATTTTACGCAATTTAAAATATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22768</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>65235</contig_pos>
        <strand>+</strand>
        <context>GTACACTATA[A/T]AATAAAATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAGGCCTAGAAAACCTTCTGAGATTCTAGGCCATCTACGGTACACTATA</left_flank>
        <right_flank>AATAAAATGACCCCTTGTGGACTCTAGTGGTTGGACAGGTATTCTTACTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAGAATTCTCTGAATATGATGGGAAAATGGCGGGGAAATTGGAAGTTTCCGTTTCTTGAAACCGAAACCCGTCCCCCATAAAAAAAGGGGGCGGAGCTTAACCTCTTTTCGGCTTCAACCCACGCCACACTGAAATTTTTGGGCTATTTCGGAACACTGAAAAGCTCAAAATCCTGGCAAAAAAAGAAGAGACAAAAGAAGAAGTTATGAATGCGTGGGAGTTTCGGGGGGGATTCCCCATAGAAAAAGTATAGCAAAAAGGGGAGGATCCTATTGAAATCTGTGGGTGGGAGGGGAGAGGAGAGTGCAAGTGACGCCTAGTTAATAGAGTTGAGAAGAAGATGTTTCAAAATAGAGTGACACACGAAAGGATAAGAGCTGAAACAGATGCCACGTGGCGAATCGGGATCAATCTGGGATCATTGAAATCCTATTCGTCGGAATCGGAAGGCCTAGAAAACCTTCTGAGATTCTAGGCCATCTACGGTACACTATAAAATAAAATGACCCCTTGTGGACTCTAGTGGTTGGACAGGTATTCTTACTGTCAATTGGGGAGAATCTTGTGATCTGGAAAGTGATCTTGTGGGGCCTATAATTCAATTGGTGGTGGCCTAGAAACCTTTCTCAGACATCCTGACTCGATTCTAGGCCATCTATGGTACACTAAAATGACCCCCTTGGCTTTCAACTTTGAGCCCATATATCTCGCTTGCTGTAAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCACAATAACATCAACATTTTATCAGTTGACAAGTTTTTGATATCATTCACAGGAATCGAGATACAGTACCTGGAGCTCGGCTGTCCGGTTTCCGATCACTTTGAAAAAACTTTGGAGGGTGTGAAAATGACTAATCGGGCGATTTCGATCGATTTCCGATTTTGTACTCCTCGTGGACAAGTCCGACGCACGAAATTTGAATTTTTGGGTTGAAATGCAGCTTAAAACGCGATTTTCGG</canonical>
            <polymorphic>AAGAAGAATTCTCTGAATATGATGGGAAAATGGCGGGGAAATTGGAAGTTTCCGTTTCTTGAAACCGAAACCCGTCCCCCATAAAAAAAGGGGGCGGAGCTTAACCTCTTTTCGGCTTCAACCCACGCCACACTGAAATTTTTGGGCTATTTCGGAACACTGAAAAGCTCAAAATCCTGGCAAAAAAAGAAGAGACAAAAGAAGAAGTTATGAATGCGTGGGAGTTTCGGGGGGGATTCCCCATAGAAAAAGTATAGCAAAAAGGGGAGGATCCTATTGAAATCTGTGGGTGGGAGGGGAGAGGAGAGTGCAAGTGACGCCTAGTTAATAGAGTTGAGAAGAAGATGTTTCAAAATAGAGTGACACACGAAAGGATAAGAGCTGAAACAGATGCCACGTGGCGAATCGGGATCAATCTGGGATCATTGAAATCCTATTCGTCGGAATCGGAAGGCCTAGAAAACCTTCTGAGATTCTAGGCCATCTACGGTACACTATAWAATAAAATGACCCCTTGTGGACTCTAGTGGTTGGACAGGTATTCTTACTGTCAATTGGGGAGAATCTTGTGATCTGGAAAGTGATCTTGTGGGGCCTATAATTCAATTGGTGGTGGCCTAGAAACCTTTCTCAGACATCCTGACTCGATTCTAGGCCATCTATGGTACACTAAAATGACCCCCTTGGCTTTCAACTTTGAGCCCATATATCTCGCTTGCTGTAAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCACAATAACATCAACATTTTATCAGTTGACAAGTTTTTGATATCATTCACAGGAATCGAGATACAGTACCTGGAGCTCGGCTGTCCGGTTTCCGATCACTTTGAAAAAACTTTGGAGGGTGTGAAAATGACTAATCGGGCGATTTCGATCGATTTCCGATTTTGTACTCCTCGTGGACAAGTCCGACGCACGAAATTTGAATTTTTGGGTTGAAATGCAGCTTAAAACGCGATTTTCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGACGCCTAGTTAATAGAGTTG</pcr_primer_p1>
		<pcr_primer_p2>CCAATTGACAGTAAGAATACCTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GTGACGCCTAGTTAATAGAGTTGAGAAGAAGATGTTTCAAAATAGAGTGACACACGAAAGGATAAGAGCTGAAACAGATGCCACGTGGCGAATCGGGATCAATCTGGGATCATTGAAATCCTATTCGTCGGAATCGGAAGGCCTAGAAAACCTTCTGAGATTCTAGGCCATCTACGGTACACTATAAAATAAAATGACCCCTTGTGGACTCTAGTGGTTGGACAGGTATTCTTACTGTCAATTGG</canonical_amplicon>
		<polymorphic_amplicon>GTGACGCCTAGTTAATAGAGTTGAGAAGAAGATGTTTCAAAATAGAGTGACACACGAAAGGATAAGAGCTGAAACAGATGCCACGTGGCGAATCGGGATCAATCTGGGATCATTGAAATCCTATTCGTCGGAATCGGAAGGCCTAGAAAACCTTCTGAGATTCTAGGCCATCTACGGTACACTATAWAATAAAATGACCCCTTGTGGACTCTAGTGGTTGGACAGGTATTCTTACTGTCAATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22769</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>65196</contig_pos>
        <strand>+</strand>
        <context>AAGGCCTAGA[A/G]AACCTTCTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCAATCTGGGATCATTGAAATCCTATTCGTCGGAATCGGAAGGCCTAGA</left_flank>
        <right_flank>AACCTTCTGAGATTCTAGGCCATCTACGGTACACTATAAAATAAAATGAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGTCCTTGAAGGATTCTGAAAAAAAAGGAATTTCTAAAAGAAGAATTCTCTGAATATGATGGGAAAATGGCGGGGAAATTGGAAGTTTCCGTTTCTTGAAACCGAAACCCGTCCCCCATAAAAAAAGGGGGCGGAGCTTAACCTCTTTTCGGCTTCAACCCACGCCACACTGAAATTTTTGGGCTATTTCGGAACACTGAAAAGCTCAAAATCCTGGCAAAAAAAGAAGAGACAAAAGAAGAAGTTATGAATGCGTGGGAGTTTCGGGGGGGATTCCCCATAGAAAAAGTATAGCAAAAAGGGGAGGATCCTATTGAAATCTGTGGGTGGGAGGGGAGAGGAGAGTGCAAGTGACGCCTAGTTAATAGAGTTGAGAAGAAGATGTTTCAAAATAGAGTGACACACGAAAGGATAAGAGCTGAAACAGATGCCACGTGGCGAATCGGGATCAATCTGGGATCATTGAAATCCTATTCGTCGGAATCGGAAGGCCTAGAAAACCTTCTGAGATTCTAGGCCATCTACGGTACACTATAAAATAAAATGACCCCTTGTGGACTCTAGTGGTTGGACAGGTATTCTTACTGTCAATTGGGGAGAATCTTGTGATCTGGAAAGTGATCTTGTGGGGCCTATAATTCAATTGGTGGTGGCCTAGAAACCTTTCTCAGACATCCTGACTCGATTCTAGGCCATCTATGGTACACTAAAATGACCCCCTTGGCTTTCAACTTTGAGCCCATATATCTCGCTTGCTGTAAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCACAATAACATCAACATTTTATCAGTTGACAAGTTTTTGATATCATTCACAGGAATCGAGATACAGTACCTGGAGCTCGGCTGTCCGGTTTCCGATCACTTTGAAAAAACTTTGGAGGGTGTGAAAATGACTAATCGGGCGATTTCGATCGATTTCCGATTTTGTACTCCTCGTGGACAAGTCCGACGCACGAAATTTGA</canonical>
            <polymorphic>TTTGTCCTTGAAGGATTCTGAAAAAAAAGGAATTTCTAAAAGAAGAATTCTCTGAATATGATGGGAAAATGGCGGGGAAATTGGAAGTTTCCGTTTCTTGAAACCGAAACCCGTCCCCCATAAAAAAAGGGGGCGGAGCTTAACCTCTTTTCGGCTTCAACCCACGCCACACTGAAATTTTTGGGCTATTTCGGAACACTGAAAAGCTCAAAATCCTGGCAAAAAAAGAAGAGACAAAAGAAGAAGTTATGAATGCGTGGGAGTTTCGGGGGGGATTCCCCATAGAAAAAGTATAGCAAAAAGGGGAGGATCCTATTGAAATCTGTGGGTGGGAGGGGAGAGGAGAGTGCAAGTGACGCCTAGTTAATAGAGTTGAGAAGAAGATGTTTCAAAATAGAGTGACACACGAAAGGATAAGAGCTGAAACAGATGCCACGTGGCGAATCGGGATCAATCTGGGATCATTGAAATCCTATTCGTCGGAATCGGAAGGCCTAGARAACCTTCTGAGATTCTAGGCCATCTACGGTACACTATAAAATAAAATGACCCCTTGTGGACTCTAGTGGTTGGACAGGTATTCTTACTGTCAATTGGGGAGAATCTTGTGATCTGGAAAGTGATCTTGTGGGGCCTATAATTCAATTGGTGGTGGCCTAGAAACCTTTCTCAGACATCCTGACTCGATTCTAGGCCATCTATGGTACACTAAAATGACCCCCTTGGCTTTCAACTTTGAGCCCATATATCTCGCTTGCTGTAAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCACAATAACATCAACATTTTATCAGTTGACAAGTTTTTGATATCATTCACAGGAATCGAGATACAGTACCTGGAGCTCGGCTGTCCGGTTTCCGATCACTTTGAAAAAACTTTGGAGGGTGTGAAAATGACTAATCGGGCGATTTCGATCGATTTCCGATTTTGTACTCCTCGTGGACAAGTCCGACGCACGAAATTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>502 336 162</canonical_bands>
                <polymorphic_bands>664 336</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGACGCCTAGTTAATAGAGTTG</pcr_primer_p1>
		<pcr_primer_p2>CCAATTGACAGTAAGAATACCTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GTGACGCCTAGTTAATAGAGTTGAGAAGAAGATGTTTCAAAATAGAGTGACACACGAAAGGATAAGAGCTGAAACAGATGCCACGTGGCGAATCGGGATCAATCTGGGATCATTGAAATCCTATTCGTCGGAATCGGAAGGCCTAGAAAACCTTCTGAGATTCTAGGCCATCTACGGTACACTATAAAATAAAATGACCCCTTGTGGACTCTAGTGGTTGGACAGGTATTCTTACTGTCAATTGG</canonical_amplicon>
		<polymorphic_amplicon>GTGACGCCTAGTTAATAGAGTTGAGAAGAAGATGTTTCAAAATAGAGTGACACACGAAAGGATAAGAGCTGAAACAGATGCCACGTGGCGAATCGGGATCAATCTGGGATCATTGAAATCCTATTCGTCGGAATCGGAAGGCCTAGARAACCTTCTGAGATTCTAGGCCATCTACGGTACACTATAAAATAAAATGACCCCTTGTGGACTCTAGTGGTTGGACAGGTATTCTTACTGTCAATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22770</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>65157</contig_pos>
        <strand>+</strand>
        <context>TCAATCTGGG[A/G]TCATTGAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGATAAGAGCTGAAACAGATGCCACGTGGCGAATCGGGATCAATCTGGG</left_flank>
        <right_flank>TCATTGAAATCCTATTCGTCGGAATCGGAAGGCCTAGAAAACCTTCTGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGACGACGAACAGCAAAAGTCGTCCTGTCATACCCATTTTTGTCCTTGAAGGATTCTGAAAAAAAAGGAATTTCTAAAAGAAGAATTCTCTGAATATGATGGGAAAATGGCGGGGAAATTGGAAGTTTCCGTTTCTTGAAACCGAAACCCGTCCCCCATAAAAAAAGGGGGCGGAGCTTAACCTCTTTTCGGCTTCAACCCACGCCACACTGAAATTTTTGGGCTATTTCGGAACACTGAAAAGCTCAAAATCCTGGCAAAAAAAGAAGAGACAAAAGAAGAAGTTATGAATGCGTGGGAGTTTCGGGGGGGATTCCCCATAGAAAAAGTATAGCAAAAAGGGGAGGATCCTATTGAAATCTGTGGGTGGGAGGGGAGAGGAGAGTGCAAGTGACGCCTAGTTAATAGAGTTGAGAAGAAGATGTTTCAAAATAGAGTGACACACGAAAGGATAAGAGCTGAAACAGATGCCACGTGGCGAATCGGGATCAATCTGGGATCATTGAAATCCTATTCGTCGGAATCGGAAGGCCTAGAAAACCTTCTGAGATTCTAGGCCATCTACGGTACACTATAAAATAAAATGACCCCTTGTGGACTCTAGTGGTTGGACAGGTATTCTTACTGTCAATTGGGGAGAATCTTGTGATCTGGAAAGTGATCTTGTGGGGCCTATAATTCAATTGGTGGTGGCCTAGAAACCTTTCTCAGACATCCTGACTCGATTCTAGGCCATCTATGGTACACTAAAATGACCCCCTTGGCTTTCAACTTTGAGCCCATATATCTCGCTTGCTGTAAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCACAATAACATCAACATTTTATCAGTTGACAAGTTTTTGATATCATTCACAGGAATCGAGATACAGTACCTGGAGCTCGGCTGTCCGGTTTCCGATCACTTTGAAAAAACTTTGGAGGGTGTGAAAATGACTAATCGGGCGATTTCGATCGATTTCCGATT</canonical>
            <polymorphic>ACGACGACGAACAGCAAAAGTCGTCCTGTCATACCCATTTTTGTCCTTGAAGGATTCTGAAAAAAAAGGAATTTCTAAAAGAAGAATTCTCTGAATATGATGGGAAAATGGCGGGGAAATTGGAAGTTTCCGTTTCTTGAAACCGAAACCCGTCCCCCATAAAAAAAGGGGGCGGAGCTTAACCTCTTTTCGGCTTCAACCCACGCCACACTGAAATTTTTGGGCTATTTCGGAACACTGAAAAGCTCAAAATCCTGGCAAAAAAAGAAGAGACAAAAGAAGAAGTTATGAATGCGTGGGAGTTTCGGGGGGGATTCCCCATAGAAAAAGTATAGCAAAAAGGGGAGGATCCTATTGAAATCTGTGGGTGGGAGGGGAGAGGAGAGTGCAAGTGACGCCTAGTTAATAGAGTTGAGAAGAAGATGTTTCAAAATAGAGTGACACACGAAAGGATAAGAGCTGAAACAGATGCCACGTGGCGAATCGGGATCAATCTGGGRTCATTGAAATCCTATTCGTCGGAATCGGAAGGCCTAGAAAACCTTCTGAGATTCTAGGCCATCTACGGTACACTATAAAATAAAATGACCCCTTGTGGACTCTAGTGGTTGGACAGGTATTCTTACTGTCAATTGGGGAGAATCTTGTGATCTGGAAAGTGATCTTGTGGGGCCTATAATTCAATTGGTGGTGGCCTAGAAACCTTTCTCAGACATCCTGACTCGATTCTAGGCCATCTATGGTACACTAAAATGACCCCCTTGGCTTTCAACTTTGAGCCCATATATCTCGCTTGCTGTAAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCACAATAACATCAACATTTTATCAGTTGACAAGTTTTTGATATCATTCACAGGAATCGAGATACAGTACCTGGAGCTCGGCTGTCCGGTTTCCGATCACTTTGAAAAAACTTTGGAGGGTGTGAAAATGACTAATCGGGCGATTTCGATCGATTTCCGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>347 272 150 140 53 15 12 11</canonical_bands>
                <polymorphic_bands>347 272 161 140 53 15 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGACGCCTAGTTAATAGAGTTG</pcr_primer_p1>
		<pcr_primer_p2>CCAATTGACAGTAAGAATACCTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GTGACGCCTAGTTAATAGAGTTGAGAAGAAGATGTTTCAAAATAGAGTGACACACGAAAGGATAAGAGCTGAAACAGATGCCACGTGGCGAATCGGGATCAATCTGGGATCATTGAAATCCTATTCGTCGGAATCGGAAGGCCTAGAAAACCTTCTGAGATTCTAGGCCATCTACGGTACACTATAAAATAAAATGACCCCTTGTGGACTCTAGTGGTTGGACAGGTATTCTTACTGTCAATTGG</canonical_amplicon>
		<polymorphic_amplicon>GTGACGCCTAGTTAATAGAGTTGAGAAGAAGATGTTTCAAAATAGAGTGACACACGAAAGGATAAGAGCTGAAACAGATGCCACGTGGCGAATCGGGATCAATCTGGGRTCATTGAAATCCTATTCGTCGGAATCGGAAGGCCTAGAAAACCTTCTGAGATTCTAGGCCATCTACGGTACACTATAAAATAAAATGACCCCTTGTGGACTCTAGTGGTTGGACAGGTATTCTTACTGTCAATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22771</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>65026</contig_pos>
        <strand>+</strand>
        <context>AATCTGTGGG[C/T]GGGAGGGGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCATAGAAAAAGTATAGCAAAAAGGGGAGGATCCTATTGAAATCTGTGGG</left_flank>
        <right_flank>GGGAGGGGAGAGGAGAGTGCAAGTGACGCCTAGTTAATAGAGTTGAGAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAGCTGAAAATTGCCTATTTATGGCCGAAAATTGACGATTTTAAGCCTAAAAATGGTCAATTGACACTGAAAATGACAATTTCTTACCCCTCATAGCTTCTGAAGCCATCACGAAGACCATGACGACGACGACGACGAACAGCAAAAGTCGTCCTGTCATACCCATTTTTGTCCTTGAAGGATTCTGAAAAAAAAGGAATTTCTAAAAGAAGAATTCTCTGAATATGATGGGAAAATGGCGGGGAAATTGGAAGTTTCCGTTTCTTGAAACCGAAACCCGTCCCCCATAAAAAAAGGGGGCGGAGCTTAACCTCTTTTCGGCTTCAACCCACGCCACACTGAAATTTTTGGGCTATTTCGGAACACTGAAAAGCTCAAAATCCTGGCAAAAAAAGAAGAGACAAAAGAAGAAGTTATGAATGCGTGGGAGTTTCGGGGGGGATTCCCCATAGAAAAAGTATAGCAAAAAGGGGAGGATCCTATTGAAATCTGTGGGTGGGAGGGGAGAGGAGAGTGCAAGTGACGCCTAGTTAATAGAGTTGAGAAGAAGATGTTTCAAAATAGAGTGACACACGAAAGGATAAGAGCTGAAACAGATGCCACGTGGCGAATCGGGATCAATCTGGGATCATTGAAATCCTATTCGTCGGAATCGGAAGGCCTAGAAAACCTTCTGAGATTCTAGGCCATCTACGGTACACTATAAAATAAAATGACCCCTTGTGGACTCTAGTGGTTGGACAGGTATTCTTACTGTCAATTGGGGAGAATCTTGTGATCTGGAAAGTGATCTTGTGGGGCCTATAATTCAATTGGTGGTGGCCTAGAAACCTTTCTCAGACATCCTGACTCGATTCTAGGCCATCTATGGTACACTAAAATGACCCCCTTGGCTTTCAACTTTGAGCCCATATATCTCGCTTGCTGTAAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCACAATAACATCAACATTTTATCAGTTGAC</canonical>
            <polymorphic>TTTGAGCTGAAAATTGCCTATTTATGGCCGAAAATTGACGATTTTAAGCCTAAAAATGGTCAATTGACACTGAAAATGACAATTTCTTACCCCTCATAGCTTCTGAAGCCATCACGAAGACCATGACGACGACGACGACGAACAGCAAAAGTCGTCCTGTCATACCCATTTTTGTCCTTGAAGGATTCTGAAAAAAAAGGAATTTCTAAAAGAAGAATTCTCTGAATATGATGGGAAAATGGCGGGGAAATTGGAAGTTTCCGTTTCTTGAAACCGAAACCCGTCCCCCATAAAAAAAGGGGGCGGAGCTTAACCTCTTTTCGGCTTCAACCCACGCCACACTGAAATTTTTGGGCTATTTCGGAACACTGAAAAGCTCAAAATCCTGGCAAAAAAAGAAGAGACAAAAGAAGAAGTTATGAATGCGTGGGAGTTTCGGGGGGGATTCCCCATAGAAAAAGTATAGCAAAAAGGGGAGGATCCTATTGAAATCTGTGGGYGGGAGGGGAGAGGAGAGTGCAAGTGACGCCTAGTTAATAGAGTTGAGAAGAAGATGTTTCAAAATAGAGTGACACACGAAAGGATAAGAGCTGAAACAGATGCCACGTGGCGAATCGGGATCAATCTGGGATCATTGAAATCCTATTCGTCGGAATCGGAAGGCCTAGAAAACCTTCTGAGATTCTAGGCCATCTACGGTACACTATAAAATAAAATGACCCCTTGTGGACTCTAGTGGTTGGACAGGTATTCTTACTGTCAATTGGGGAGAATCTTGTGATCTGGAAAGTGATCTTGTGGGGCCTATAATTCAATTGGTGGTGGCCTAGAAACCTTTCTCAGACATCCTGACTCGATTCTAGGCCATCTATGGTACACTAAAATGACCCCCTTGGCTTTCAACTTTGAGCCCATATATCTCGCTTGCTGTAAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCACAATAACATCAACATTTTATCAGTTGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>220 94 94 69 68 61 54 46 45 42 29 28 27 25 21 18 12 10 8 6 5 4 4 3 3 2 2</canonical_bands>
                <polymorphic_bands>220 94 94 69 68 61 54 46 45 42 29 28 27 25 22 21 12 10 8 6 5 4 3 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCCCCATAGAAAAAGTATAGC</pcr_primer_p1>
		<pcr_primer_p2>GATGGCCTAGAATCTCAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCCCCATAGAAAAAGTATAGCAAAAAGGGGAGGATCCTATTGAAATCTGTGGGTGGGAGGGGAGAGGAGAGTGCAAGTGACGCCTAGTTAATAGAGTTGAGAAGAAGATGTTTCAAAATAGAGTGACACACGAAAGGATAAGAGCTGAAACAGATGCCACGTGGCGAATCGGGATCAATCTGGGATCATTGAAATCCTATTCGTCGGAATCGGAAGGCCTAGAAAACCTTCTGAGATTCTAGGCCATC</canonical_amplicon>
		<polymorphic_amplicon>ATTCCCCATAGAAAAAGTATAGCAAAAAGGGGAGGATCCTATTGAAATCTGTGGGYGGGAGGGGAGAGGAGAGTGCAAGTGACGCCTAGTTAATAGAGTTGAGAAGAAGATGTTTCAAAATAGAGTGACACACGAAAGGATAAGAGCTGAAACAGATGCCACGTGGCGAATCGGGATCAATCTGGGATCATTGAAATCCTATTCGTCGGAATCGGAAGGCCTAGAAAACCTTCTGAGATTCTAGGCCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22772</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>103734</contig_pos>
        <strand></strand>
        <context>aaatttcaaa[G/A]tgatwgkgac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CATCTCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAA</left_flank>
        <right_flank>TGATTGGGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCTATTCCTGTAATCCGAAAGCTATCTAAAAATTCGAATTACATCCTGAGCCGATCTTCCTAAATTTGAAAAAAATTGAAGCCAATTTCGAGAATCCAAAAAAAACCAACTTACTGTATAACCTACAACCTGTACTTCCGGAGGGCCCTTTTATTTCAGGAACATCACAAGCTTCTGAAATCTAAATAAGAACCCTGGTGATCTCAAAGTTTGATCATTGGCGAGAAAGTGCAAGACAGAAAAGGATCTACAGTACCGGTCAATAAGATATAAAAACACTTTTTTTCCAGTTGATTTTCGGTCATTTTCAGGAGTCTGGAGCTTGGGTAGTCAAGTTTCCGATCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTTGCATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATCTCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGATTGGGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTGAAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTCTGGAGAAACGAGACTTTTTAGACTGAAAAATGTCGAAAAATTCAAAATAGACTTCATCTAAAATCTGGCTACCAGATTTATAAACCATGTTTCCAATGTCTCTAAACAACCAAAATAACCTCTCTCCCGCACTTTTTCCATTAGTAGGCCCGCCTATTCAGTGTTATATTCTATACACGACAAACACACAGTTGAATGAACAACCACACACACGGGCATCTTTTTCTCTCTCTCTCGAAAAACCTGAATAGGTACCGAGAGAGAGAGGACTCAATTATGTGTTAGTTAGGGTTTCTGAAGAGGTAGGGGGCTATTTGGTGACCCCCATATTGTTGTGAAAAGTGGGGATATAGAGAAGA</canonical>
            <polymorphic>AATCTATTCCTGTAATCCGAAAGCTATCTAAAAATTCGAATTACATCCTGAGCCGATCTTCCTAAATTTGAAAAAAATTGAAGCCAATTTCGAGAATCCAAAAAAAACCAACTTACTGTATAACCTACAACCTGTACTTCCGGAGGGCCCTTTTATTTCAGGAACATCACAAGCTTCTGAAATCTAAATAAGAACCCTGGTGATCTCAAAGTTTGATCATTGGCGAGAAAGTGCAAGACAGAAAAGGATCTACAGTACCGGTCAATAAGATATAAAAACACTTTTTTTCCAGTTGATTTTCGGTCATTTTCAGGAGTCTGGAGCTTGGGTAGTCAAGTTTCCGATCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTTGCATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATCTCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAARTGATTGGGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTGAAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTCTGGAGAAACGAGACTTTTTAGACTGAAAAATGTCGAAAAATTCAAAATAGACTTCATCTAAAATCTGGCTACCAGATTTATAAACCATGTTTCCAATGTCTCTAAACAACCAAAATAACCTCTCTCCCGCACTTTTTCCATTAGTAGGCCCGCCTATTCAGTGTTATATTCTATACACGACAAACACACAGTTGAATGAACAACCACACACACGGGCATCTTTTTCTCTCTCTCTCGAAAAACCTGAATAGGTACCGAGAGAGAGAGGACTCAATTATGTGTTAGTTAGGGTTTCTGAAGAGGTAGGGGGCTATTTGGTGACCCCCATATTGTTGTGAAAAGTGGGGATATAGAGAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>239 169 121 73 69 47 39 33 32 31 31 28 18 17 15 14 9 7 2 2 2 2</canonical_bands>
                <polymorphic_bands>239 169 121 73 69 59 47 39 33 32 31 18 17 15 14 9 7 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCAAGACAGAAAAGGATCTAC</pcr_primer_p1>
		<pcr_primer_p2>AGTCTAAAAAGTCTCGTTTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>434</pcr_amplicon_size>
		<canonical_amplicon>TGCAAGACAGAAAAGGATCTACAGTACCGGTCAATAAGATATAAAAACACTTTTTTTCCAGTTGATTTTCGGTCATTTTCAGGAGTCTGGAGCTTGGGTAGTCAAGTTTCCGATCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTTGCATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATCTCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGATTGGGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTGAAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTCTGGAGAAACGAGACTTTTTAGACT</canonical_amplicon>
		<polymorphic_amplicon>TGCAAGACAGAAAAGGATCTACAGTACCGGTCAATAAGATATAAAAACACTTTTTTTCCAGTTGATTTTCGGTCATTTTCAGGAGTCTGGAGCTTGGGTAGTCAAGTTTCCGATCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTTGCATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATCTCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAARTGATTGGGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTGAAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTCTGGAGAAACGAGACTTTTTAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22773</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>103739</contig_pos>
        <strand></strand>
        <context>tcaaartgat[T/A]gkgactttgg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGAT</left_flank>
        <right_flank>GGGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCCTGTAATCCGAAAGCTATCTAAAAATTCGAATTACATCCTGAGCCGATCTTCCTAAATTTGAAAAAAATTGAAGCCAATTTCGAGAATCCAAAAAAAACCAACTTACTGTATAACCTACAACCTGTACTTCCGGAGGGCCCTTTTATTTCAGGAACATCACAAGCTTCTGAAATCTAAATAAGAACCCTGGTGATCTCAAAGTTTGATCATTGGCGAGAAAGTGCAAGACAGAAAAGGATCTACAGTACCGGTCAATAAGATATAAAAACACTTTTTTTCCAGTTGATTTTCGGTCATTTTCAGGAGTCTGGAGCTTGGGTAGTCAAGTTTCCGATCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTTGCATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATCTCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGATTGGGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTGAAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTCTGGAGAAACGAGACTTTTTAGACTGAAAAATGTCGAAAAATTCAAAATAGACTTCATCTAAAATCTGGCTACCAGATTTATAAACCATGTTTCCAATGTCTCTAAACAACCAAAATAACCTCTCTCCCGCACTTTTTCCATTAGTAGGCCCGCCTATTCAGTGTTATATTCTATACACGACAAACACACAGTTGAATGAACAACCACACACACGGGCATCTTTTTCTCTCTCTCTCGAAAAACCTGAATAGGTACCGAGAGAGAGAGGACTCAATTATGTGTTAGTTAGGGTTTCTGAAGAGGTAGGGGGCTATTTGGTGACCCCCATATTGTTGTGAAAAGTGGGGATATAGAGAAGAGAGGA</canonical>
            <polymorphic>ATTCCTGTAATCCGAAAGCTATCTAAAAATTCGAATTACATCCTGAGCCGATCTTCCTAAATTTGAAAAAAATTGAAGCCAATTTCGAGAATCCAAAAAAAACCAACTTACTGTATAACCTACAACCTGTACTTCCGGAGGGCCCTTTTATTTCAGGAACATCACAAGCTTCTGAAATCTAAATAAGAACCCTGGTGATCTCAAAGTTTGATCATTGGCGAGAAAGTGCAAGACAGAAAAGGATCTACAGTACCGGTCAATAAGATATAAAAACACTTTTTTTCCAGTTGATTTTCGGTCATTTTCAGGAGTCTGGAGCTTGGGTAGTCAAGTTTCCGATCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTTGCATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATCTCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGATWGGGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTGAAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTCTGGAGAAACGAGACTTTTTAGACTGAAAAATGTCGAAAAATTCAAAATAGACTTCATCTAAAATCTGGCTACCAGATTTATAAACCATGTTTCCAATGTCTCTAAACAACCAAAATAACCTCTCTCCCGCACTTTTTCCATTAGTAGGCCCGCCTATTCAGTGTTATATTCTATACACGACAAACACACAGTTGAATGAACAACCACACACACGGGCATCTTTTTCTCTCTCTCTCGAAAAACCTGAATAGGTACCGAGAGAGAGAGGACTCAATTATGTGTTAGTTAGGGTTTCTGAAGAGGTAGGGGGCTATTTGGTGACCCCCATATTGTTGTGAAAAGTGGGGATATAGAGAAGAGAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCAAGACAGAAAAGGATCTAC</pcr_primer_p1>
		<pcr_primer_p2>AGTCTAAAAAGTCTCGTTTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>434</pcr_amplicon_size>
		<canonical_amplicon>TGCAAGACAGAAAAGGATCTACAGTACCGGTCAATAAGATATAAAAACACTTTTTTTCCAGTTGATTTTCGGTCATTTTCAGGAGTCTGGAGCTTGGGTAGTCAAGTTTCCGATCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTTGCATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATCTCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGATTGGGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTGAAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTCTGGAGAAACGAGACTTTTTAGACT</canonical_amplicon>
		<polymorphic_amplicon>TGCAAGACAGAAAAGGATCTACAGTACCGGTCAATAAGATATAAAAACACTTTTTTTCCAGTTGATTTTCGGTCATTTTCAGGAGTCTGGAGCTTGGGTAGTCAAGTTTCCGATCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTTGCATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATCTCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGATWGGGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTGAAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTCTGGAGAAACGAGACTTTTTAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22774</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>103741</contig_pos>
        <strand></strand>
        <context>aaartgatwg[G/T]gactttggca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGATTG</left_flank>
        <right_flank>GACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTGTAATCCGAAAGCTATCTAAAAATTCGAATTACATCCTGAGCCGATCTTCCTAAATTTGAAAAAAATTGAAGCCAATTTCGAGAATCCAAAAAAAACCAACTTACTGTATAACCTACAACCTGTACTTCCGGAGGGCCCTTTTATTTCAGGAACATCACAAGCTTCTGAAATCTAAATAAGAACCCTGGTGATCTCAAAGTTTGATCATTGGCGAGAAAGTGCAAGACAGAAAAGGATCTACAGTACCGGTCAATAAGATATAAAAACACTTTTTTTCCAGTTGATTTTCGGTCATTTTCAGGAGTCTGGAGCTTGGGTAGTCAAGTTTCCGATCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTTGCATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATCTCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGATTGGGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTGAAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTCTGGAGAAACGAGACTTTTTAGACTGAAAAATGTCGAAAAATTCAAAATAGACTTCATCTAAAATCTGGCTACCAGATTTATAAACCATGTTTCCAATGTCTCTAAACAACCAAAATAACCTCTCTCCCGCACTTTTTCCATTAGTAGGCCCGCCTATTCAGTGTTATATTCTATACACGACAAACACACAGTTGAATGAACAACCACACACACGGGCATCTTTTTCTCTCTCTCTCGAAAAACCTGAATAGGTACCGAGAGAGAGAGGACTCAATTATGTGTTAGTTAGGGTTTCTGAAGAGGTAGGGGGCTATTTGGTGACCCCCATATTGTTGTGAAAAGTGGGGATATAGAGAAGAGAGGAAG</canonical>
            <polymorphic>TCCTGTAATCCGAAAGCTATCTAAAAATTCGAATTACATCCTGAGCCGATCTTCCTAAATTTGAAAAAAATTGAAGCCAATTTCGAGAATCCAAAAAAAACCAACTTACTGTATAACCTACAACCTGTACTTCCGGAGGGCCCTTTTATTTCAGGAACATCACAAGCTTCTGAAATCTAAATAAGAACCCTGGTGATCTCAAAGTTTGATCATTGGCGAGAAAGTGCAAGACAGAAAAGGATCTACAGTACCGGTCAATAAGATATAAAAACACTTTTTTTCCAGTTGATTTTCGGTCATTTTCAGGAGTCTGGAGCTTGGGTAGTCAAGTTTCCGATCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTTGCATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATCTCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGATTGKGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTGAAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTCTGGAGAAACGAGACTTTTTAGACTGAAAAATGTCGAAAAATTCAAAATAGACTTCATCTAAAATCTGGCTACCAGATTTATAAACCATGTTTCCAATGTCTCTAAACAACCAAAATAACCTCTCTCCCGCACTTTTTCCATTAGTAGGCCCGCCTATTCAGTGTTATATTCTATACACGACAAACACACAGTTGAATGAACAACCACACACACGGGCATCTTTTTCTCTCTCTCTCGAAAAACCTGAATAGGTACCGAGAGAGAGAGGACTCAATTATGTGTTAGTTAGGGTTTCTGAAGAGGTAGGGGGCTATTTGGTGACCCCCATATTGTTGTGAAAAGTGGGGATATAGAGAAGAGAGGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCAAGACAGAAAAGGATCTAC</pcr_primer_p1>
		<pcr_primer_p2>AGTCTAAAAAGTCTCGTTTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>434</pcr_amplicon_size>
		<canonical_amplicon>TGCAAGACAGAAAAGGATCTACAGTACCGGTCAATAAGATATAAAAACACTTTTTTTCCAGTTGATTTTCGGTCATTTTCAGGAGTCTGGAGCTTGGGTAGTCAAGTTTCCGATCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTTGCATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATCTCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGATTGGGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTGAAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTCTGGAGAAACGAGACTTTTTAGACT</canonical_amplicon>
		<polymorphic_amplicon>TGCAAGACAGAAAAGGATCTACAGTACCGGTCAATAAGATATAAAAACACTTTTTTTCCAGTTGATTTTCGGTCATTTTCAGGAGTCTGGAGCTTGGGTAGTCAAGTTTCCGATCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTTGCATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATCTCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGATTGKGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTGAAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTCTGGAGAAACGAGACTTTTTAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22775</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>103875</contig_pos>
        <strand></strand>
        <context>TTATATCTTT[C/T]TGGAGAAACG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATATATTTGAAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTT</left_flank>
        <right_flank>TGGAGAAACGAGACTTTTTAGACTGAAAAATGTCGAAAAATTCAAAATAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGGGCCCTTTTATTTCAGGAACATCACAAGCTTCTGAAATCTAAATAAGAACCCTGGTGATCTCAAAGTTTGATCATTGGCGAGAAAGTGCAAGACAGAAAAGGATCTACAGTACCGGTCAATAAGATATAAAAACACTTTTTTTCCAGTTGATTTTCGGTCATTTTCAGGAGTCTGGAGCTTGGGTAGTCAAGTTTCCGATCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTTGCATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATCTCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGATTGGGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTGAAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTCTGGAGAAACGAGACTTTTTAGACTGAAAAATGTCGAAAAATTCAAAATAGACTTCATCTAAAATCTGGCTACCAGATTTATAAACCATGTTTCCAATGTCTCTAAACAACCAAAATAACCTCTCTCCCGCACTTTTTCCATTAGTAGGCCCGCCTATTCAGTGTTATATTCTATACACGACAAACACACAGTTGAATGAACAACCACACACACGGGCATCTTTTTCTCTCTCTCTCGAAAAACCTGAATAGGTACCGAGAGAGAGAGGACTCAATTATGTGTTAGTTAGGGTTTCTGAAGAGGTAGGGGGCTATTTGGTGACCCCCATATTGTTGTGAAAAGTGGGGATATAGAGAAGAGAGGAAGGCAAAGGACACATTTATAATTGCTCTTAGTTTTGGGAACGGCCCCGGGATACATACAGTTCCCTAATTGAGTCTACATGCATATACACCTCGCCATGAGTGATGGATATTAATAATGGGTAGGCGGGAGATTTC</canonical>
            <polymorphic>GGAGGGCCCTTTTATTTCAGGAACATCACAAGCTTCTGAAATCTAAATAAGAACCCTGGTGATCTCAAAGTTTGATCATTGGCGAGAAAGTGCAAGACAGAAAAGGATCTACAGTACCGGTCAATAAGATATAAAAACACTTTTTTTCCAGTTGATTTTCGGTCATTTTCAGGAGTCTGGAGCTTGGGTAGTCAAGTTTCCGATCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTTGCATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATCTCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGATTGGGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTGAAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTYTGGAGAAACGAGACTTTTTAGACTGAAAAATGTCGAAAAATTCAAAATAGACTTCATCTAAAATCTGGCTACCAGATTTATAAACCATGTTTCCAATGTCTCTAAACAACCAAAATAACCTCTCTCCCGCACTTTTTCCATTAGTAGGCCCGCCTATTCAGTGTTATATTCTATACACGACAAACACACAGTTGAATGAACAACCACACACACGGGCATCTTTTTCTCTCTCTCTCGAAAAACCTGAATAGGTACCGAGAGAGAGAGGACTCAATTATGTGTTAGTTAGGGTTTCTGAAGAGGTAGGGGGCTATTTGGTGACCCCCATATTGTTGTGAAAAGTGGGGATATAGAGAAGAGAGGAAGGCAAAGGACACATTTATAATTGCTCTTAGTTTTGGGAACGGCCCCGGGATACATACAGTTCCCTAATTGAGTCTACATGCATATACACCTCGCCATGAGTGATGGATATTAATAATGGGTAGGCGGGAGATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>266 234 208 152 115 18 7</canonical_bands>
                <polymorphic_bands>349 266 208 152 18 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCAAGACAGAAAAGGATCTAC</pcr_primer_p1>
		<pcr_primer_p2>TTGTTTAGAGACATTGGAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>519</pcr_amplicon_size>
		<canonical_amplicon>TGCAAGACAGAAAAGGATCTACAGTACCGGTCAATAAGATATAAAAACACTTTTTTTCCAGTTGATTTTCGGTCATTTTCAGGAGTCTGGAGCTTGGGTAGTCAAGTTTCCGATCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTTGCATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATCTCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGATTGGGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTGAAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTCTGGAGAAACGAGACTTTTTAGACTGAAAAATGTCGAAAAATTCAAAATAGACTTCATCTAAAATCTGGCTACCAGATTTATAAACCATGTTTCCAATGTCTCTAAACAA</canonical_amplicon>
		<polymorphic_amplicon>TGCAAGACAGAAAAGGATCTACAGTACCGGTCAATAAGATATAAAAACACTTTTTTTCCAGTTGATTTTCGGTCATTTTCAGGAGTCTGGAGCTTGGGTAGTCAAGTTTCCGATCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTTGCATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATCTCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGATTGGGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTGAAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTYTGGAGAAACGAGACTTTTTAGACTGAAAAATGTCGAAAAATTCAAAATAGACTTCATCTAAAATCTGGCTACCAGATTTATAAACCATGTTTCCAATGTCTCTAAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22776</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>103934</contig_pos>
        <strand>+</strand>
        <context>AGACTTCATC[C/T]AAAATCTGGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAGACTTTTTAGACTGAAAAATGTCGAAAAATTCAAAATAGACTTCATC</left_flank>
        <right_flank>AAAATCTGGCTACCAGATTTATAAACCATGTTTCCAATGTCTCTAAACAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATCTCAAAGTTTGATCATTGGCGAGAAAGTGCAAGACAGAAAAGGATCTACAGTACCGGTCAATAAGATATAAAAACACTTTTTTTCCAGTTGATTTTCGGTCATTTTCAGGAGTCTGGAGCTTGGGTAGTCAAGTTTCCGATCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTTGCATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATCTCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGATTGGGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTGAAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTCTGGAGAAACGAGACTTTTTAGACTGAAAAATGTCGAAAAATTCAAAATAGACTTCATCTAAAATCTGGCTACCAGATTTATAAACCATGTTTCCAATGTCTCTAAACAACCAAAATAACCTCTCTCCCGCACTTTTTCCATTAGTAGGCCCGCCTATTCAGTGTTATATTCTATACACGACAAACACACAGTTGAATGAACAACCACACACACGGGCATCTTTTTCTCTCTCTCTCGAAAAACCTGAATAGGTACCGAGAGAGAGAGGACTCAATTATGTGTTAGTTAGGGTTTCTGAAGAGGTAGGGGGCTATTTGGTGACCCCCATATTGTTGTGAAAAGTGGGGATATAGAGAAGAGAGGAAGGCAAAGGACACATTTATAATTGCTCTTAGTTTTGGGAACGGCCCCGGGATACATACAGTTCCCTAATTGAGTCTACATGCATATACACCTCGCCATGAGTGATGGATATTAATAATGGGTAGGCGGGAGATTTCGAAGGTTGAGGAGAAGGATATAGAAGCTAATTAACCCGAAATTGAGAAATTGAAGTTTT</canonical>
            <polymorphic>TGATCTCAAAGTTTGATCATTGGCGAGAAAGTGCAAGACAGAAAAGGATCTACAGTACCGGTCAATAAGATATAAAAACACTTTTTTTCCAGTTGATTTTCGGTCATTTTCAGGAGTCTGGAGCTTGGGTAGTCAAGTTTCCGATCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTTGCATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATCTCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGATTGGGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTGAAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTCTGGAGAAACGAGACTTTTTAGACTGAAAAATGTCGAAAAATTCAAAATAGACTTCATCYAAAATCTGGCTACCAGATTTATAAACCATGTTTCCAATGTCTCTAAACAACCAAAATAACCTCTCTCCCGCACTTTTTCCATTAGTAGGCCCGCCTATTCAGTGTTATATTCTATACACGACAAACACACAGTTGAATGAACAACCACACACACGGGCATCTTTTTCTCTCTCTCTCGAAAAACCTGAATAGGTACCGAGAGAGAGAGGACTCAATTATGTGTTAGTTAGGGTTTCTGAAGAGGTAGGGGGCTATTTGGTGACCCCCATATTGTTGTGAAAAGTGGGGATATAGAGAAGAGAGGAAGGCAAAGGACACATTTATAATTGCTCTTAGTTTTGGGAACGGCCCCGGGATACATACAGTTCCCTAATTGAGTCTACATGCATATACACCTCGCCATGAGTGATGGATATTAATAATGGGTAGGCGGGAGATTTCGAAGGTTGAGGAGAAGGATATAGAAGCTAATTAACCCGAAATTGAGAAATTGAAGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGAAACGAGACTTTTTAGACT</pcr_primer_p1>
		<pcr_primer_p2>CTATTCAGGTTTTTCGAGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAGAAACGAGACTTTTTAGACTGAAAAATGTCGAAAAATTCAAAATAGACTTCATCTAAAATCTGGCTACCAGATTTATAAACCATGTTTCCAATGTCTCTAAACAACCAAAATAACCTCTCTCCCGCACTTTTTCCATTAGTAGGCCCGCCTATTCAGTGTTATATTCTATACACGACAAACACACAGTTGAATGAACAACCACACACACGGGCATCTTTTTCTCTCTCTCTCGAAAAACCTGAATAG</canonical_amplicon>
		<polymorphic_amplicon>GGAGAAACGAGACTTTTTAGACTGAAAAATGTCGAAAAATTCAAAATAGACTTCATCYAAAATCTGGCTACCAGATTTATAAACCATGTTTCCAATGTCTCTAAACAACCAAAATAACCTCTCTCCCGCACTTTTTCCATTAGTAGGCCCGCCTATTCAGTGTTATATTCTATACACGACAAACACACAGTTGAATGAACAACCACACACACGGGCATCTTTTTCTCTCTCTCTCGAAAAACCTGAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22777</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>103956</contig_pos>
        <strand>+</strand>
        <context>ACCAGATTTA[G/T]AAACCATGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTCGAAAAATTCAAAATAGACTTCATCTAAAATCTGGCTACCAGATTTA</left_flank>
        <right_flank>AAACCATGTTTCCAATGTCTCTAAACAACCAAAATAACCTCTCTCCCGCA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGAGAAAGTGCAAGACAGAAAAGGATCTACAGTACCGGTCAATAAGATATAAAAACACTTTTTTTCCAGTTGATTTTCGGTCATTTTCAGGAGTCTGGAGCTTGGGTAGTCAAGTTTCCGATCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTTGCATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATCTCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGATTGGGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTGAAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTCTGGAGAAACGAGACTTTTTAGACTGAAAAATGTCGAAAAATTCAAAATAGACTTCATCTAAAATCTGGCTACCAGATTTATAAACCATGTTTCCAATGTCTCTAAACAACCAAAATAACCTCTCTCCCGCACTTTTTCCATTAGTAGGCCCGCCTATTCAGTGTTATATTCTATACACGACAAACACACAGTTGAATGAACAACCACACACACGGGCATCTTTTTCTCTCTCTCTCGAAAAACCTGAATAGGTACCGAGAGAGAGAGGACTCAATTATGTGTTAGTTAGGGTTTCTGAAGAGGTAGGGGGCTATTTGGTGACCCCCATATTGTTGTGAAAAGTGGGGATATAGAGAAGAGAGGAAGGCAAAGGACACATTTATAATTGCTCTTAGTTTTGGGAACGGCCCCGGGATACATACAGTTCCCTAATTGAGTCTACATGCATATACACCTCGCCATGAGTGATGGATATTAATAATGGGTAGGCGGGAGATTTCGAAGGTTGAGGAGAAGGATATAGAAGCTAATTAACCCGAAATTGAGAAATTGAAGTTTTGAAATAGAGAAGCTCCTTGAAG</canonical>
            <polymorphic>GCGAGAAAGTGCAAGACAGAAAAGGATCTACAGTACCGGTCAATAAGATATAAAAACACTTTTTTTCCAGTTGATTTTCGGTCATTTTCAGGAGTCTGGAGCTTGGGTAGTCAAGTTTCCGATCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTTGCATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATCTCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGATTGGGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTGAAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTCTGGAGAAACGAGACTTTTTAGACTGAAAAATGTCGAAAAATTCAAAATAGACTTCATCTAAAATCTGGCTACCAGATTTAKAAACCATGTTTCCAATGTCTCTAAACAACCAAAATAACCTCTCTCCCGCACTTTTTCCATTAGTAGGCCCGCCTATTCAGTGTTATATTCTATACACGACAAACACACAGTTGAATGAACAACCACACACACGGGCATCTTTTTCTCTCTCTCTCGAAAAACCTGAATAGGTACCGAGAGAGAGAGGACTCAATTATGTGTTAGTTAGGGTTTCTGAAGAGGTAGGGGGCTATTTGGTGACCCCCATATTGTTGTGAAAAGTGGGGATATAGAGAAGAGAGGAAGGCAAAGGACACATTTATAATTGCTCTTAGTTTTGGGAACGGCCCCGGGATACATACAGTTCCCTAATTGAGTCTACATGCATATACACCTCGCCATGAGTGATGGATATTAATAATGGGTAGGCGGGAGATTTCGAAGGTTGAGGAGAAGGATATAGAAGCTAATTAACCCGAAATTGAGAAATTGAAGTTTTGAAATAGAGAAGCTCCTTGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>499 302 199</canonical_bands>
                <polymorphic_bands>801 199</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAGAAACGAGACTTTTTAGACT</pcr_primer_p1>
		<pcr_primer_p2>CTATTCAGGTTTTTCGAGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAGAAACGAGACTTTTTAGACTGAAAAATGTCGAAAAATTCAAAATAGACTTCATCTAAAATCTGGCTACCAGATTTATAAACCATGTTTCCAATGTCTCTAAACAACCAAAATAACCTCTCTCCCGCACTTTTTCCATTAGTAGGCCCGCCTATTCAGTGTTATATTCTATACACGACAAACACACAGTTGAATGAACAACCACACACACGGGCATCTTTTTCTCTCTCTCTCGAAAAACCTGAATAG</canonical_amplicon>
		<polymorphic_amplicon>GGAGAAACGAGACTTTTTAGACTGAAAAATGTCGAAAAATTCAAAATAGACTTCATCTAAAATCTGGCTACCAGATTTAKAAACCATGTTTCCAATGTCTCTAAACAACCAAAATAACCTCTCTCCCGCACTTTTTCCATTAGTAGGCCCGCCTATTCAGTGTTATATTCTATACACGACAAACACACAGTTGAATGAACAACCACACACACGGGCATCTTTTTCTCTCTCTCTCGAAAAACCTGAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22778</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>105866</contig_pos>
        <strand>+</strand>
        <context>GAAAGCCACA[A/G]GTCATTATAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTACCCAAAGTACCCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACA</left_flank>
        <right_flank>GTCATTATACAGTGTCTGTCAAACTTCCGATGACTTTGAAAATTCGAGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAAAACTCTCTTCCTCGTCCTTCCGATAGAGAGAATTAATATGAGAATATATATATGAATCCGACGGATCGTTGTCATAAAAACTTTTGATCCACCTCCTCCCCACGGATTTCATATTATTAAATGGGCGAGAGAGTGAAGAGACGCAGACACGAAAAACCGAGGAATCGGTAGTTGTAGAGATAGATAATAATGATGATGATGATAGAAATGAAATGTGTTTGGGAGGAGAAACTAGATTTCGTTCGCCCATCACCACACACTCATGATTCGAAATAGGAAGAGAGAAACATTTCGAATTGTTATTATGATGATGATGGGGAAATGGTTATGTATGTTCAGATGGCTGGAATTGTGAAAAATGTAGAAGGATTATGGTATTACCTGTGGTGTGGATTAGTTACAGTGAAGAGAGGAGATCAGGGGGGAACATATAGCCCACCGTAATCTACCCAAAGTACCCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTCAAACTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAATGAGGTGATTCGCAGTTAGTAAGTTAGACATGTGGACCGGAAGAGACCATTAAAAATTGTGAATCGTGAATCTTGGAAGAAAGAAAATGACGACTTTTCTTAAAAATCAAAAGATTATTGAAAAAAATTAGAATTGCCCTTTTTCCATAGAACGTTACTTTTGCAGAATTGCAATCATTGACTTCATTAGCGATGTTGAATTTGTATAGATTGGGAAATTTTGAAATTTGAAATTTGAAGTTTGCTAAAAGTTTTGTGTTTCTGGGGGAGAAAAAAGGAAAAACACCATGACCACCTTACGGGTATCCATGAGCACGGGACAAAGTGAGCAAGGACATTCAAAGAAAGGGTCAA</canonical>
            <polymorphic>ATAAAAACTCTCTTCCTCGTCCTTCCGATAGAGAGAATTAATATGAGAATATATATATGAATCCGACGGATCGTTGTCATAAAAACTTTTGATCCACCTCCTCCCCACGGATTTCATATTATTAAATGGGCGAGAGAGTGAAGAGACGCAGACACGAAAAACCGAGGAATCGGTAGTTGTAGAGATAGATAATAATGATGATGATGATAGAAATGAAATGTGTTTGGGAGGAGAAACTAGATTTCGTTCGCCCATCACCACACACTCATGATTCGAAATAGGAAGAGAGAAACATTTCGAATTGTTATTATGATGATGATGGGGAAATGGTTATGTATGTTCAGATGGCTGGAATTGTGAAAAATGTAGAAGGATTATGGTATTACCTGTGGTGTGGATTAGTTACAGTGAAGAGAGGAGATCAGGGGGGAACATATAGCCCACCGTAATCTACCCAAAGTACCCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACARGTCATTATACAGTGTCTGTCAAACTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAATGAGGTGATTCGCAGTTAGTAAGTTAGACATGTGGACCGGAAGAGACCATTAAAAATTGTGAATCGTGAATCTTGGAAGAAAGAAAATGACGACTTTTCTTAAAAATCAAAAGATTATTGAAAAAAATTAGAATTGCCCTTTTTCCATAGAACGTTACTTTTGCAGAATTGCAATCATTGACTTCATTAGCGATGTTGAATTTGTATAGATTGGGAAATTTTGAAATTTGAAATTTGAAGTTTGCTAAAAGTTTTGTGTTTCTGGGGGAGAAAAAAGGAAAAACACCATGACCACCTTACGGGTATCCATGAGCACGGGACAAAGTGAGCAAGGACATTCAAAGAAAGGGTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTACAGTGAAGAGAGGAGATCA</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAATAGCTAAGCCAGAATA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GTTACAGTGAAGAGAGGAGATCAGGGGGGAACATATAGCCCACCGTAATCTACCCAAAGTACCCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTCAAACTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTTACAGTGAAGAGAGGAGATCAGGGGGGAACATATAGCCCACCGTAATCTACCCAAAGTACCCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACARGTCATTATACAGTGTCTGTCAAACTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22779</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>106160</contig_pos>
        <strand>+</strand>
        <context>CCTTTTTCCA[A/T]AGAACGTTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTTAAAAATCAAAAGATTATTGAAAAAAATTAGAATTGCCCTTTTTCCA</left_flank>
        <right_flank>AGAACGTTACTTTTGCAGAATTGCAATCATTGACTTCATTAGCGATGTTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGAATTGTTATTATGATGATGATGGGGAAATGGTTATGTATGTTCAGATGGCTGGAATTGTGAAAAATGTAGAAGGATTATGGTATTACCTGTGGTGTGGATTAGTTACAGTGAAGAGAGGAGATCAGGGGGGAACATATAGCCCACCGTAATCTACCCAAAGTACCCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTCAAACTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAATGAGGTGATTCGCAGTTAGTAAGTTAGACATGTGGACCGGAAGAGACCATTAAAAATTGTGAATCGTGAATCTTGGAAGAAAGAAAATGACGACTTTTCTTAAAAATCAAAAGATTATTGAAAAAAATTAGAATTGCCCTTTTTCCATAGAACGTTACTTTTGCAGAATTGCAATCATTGACTTCATTAGCGATGTTGAATTTGTATAGATTGGGAAATTTTGAAATTTGAAATTTGAAGTTTGCTAAAAGTTTTGTGTTTCTGGGGGAGAAAAAAGGAAAAACACCATGACCACCTTACGGGTATCCATGAGCACGGGACAAAGTGAGCAAGGACATTCAAAGAAAGGGTCAAGAAAAATTTGAAATACGCGCGATACTTTCTAAGGGGGTCCTAGAAAAATAACTATTTCAATGTGGTCCATAATTTTCGAAAATTTCCACATCTACCTAGTTTTCTATTCCACAAAAGAGCCTTTTACTTTGAGCTCGATTATCTCGATTCCTATAAGAGATATCAGTAATCTGTCAACTGATAAAATATTGGTGATACTATGGTAAACATTTTATCAGTTGACAACTTTCTGATATCTCTTACAGGAGCTGAGATAATGGAGGTCAAATTTGCCGGCTTCTATTAGATGAAATG</canonical>
            <polymorphic>TTTCGAATTGTTATTATGATGATGATGGGGAAATGGTTATGTATGTTCAGATGGCTGGAATTGTGAAAAATGTAGAAGGATTATGGTATTACCTGTGGTGTGGATTAGTTACAGTGAAGAGAGGAGATCAGGGGGGAACATATAGCCCACCGTAATCTACCCAAAGTACCCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTCAAACTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAATGAGGTGATTCGCAGTTAGTAAGTTAGACATGTGGACCGGAAGAGACCATTAAAAATTGTGAATCGTGAATCTTGGAAGAAAGAAAATGACGACTTTTCTTAAAAATCAAAAGATTATTGAAAAAAATTAGAATTGCCCTTTTTCCAWAGAACGTTACTTTTGCAGAATTGCAATCATTGACTTCATTAGCGATGTTGAATTTGTATAGATTGGGAAATTTTGAAATTTGAAATTTGAAGTTTGCTAAAAGTTTTGTGTTTCTGGGGGAGAAAAAAGGAAAAACACCATGACCACCTTACGGGTATCCATGAGCACGGGACAAAGTGAGCAAGGACATTCAAAGAAAGGGTCAAGAAAAATTTGAAATACGCGCGATACTTTCTAAGGGGGTCCTAGAAAAATAACTATTTCAATGTGGTCCATAATTTTCGAAAATTTCCACATCTACCTAGTTTTCTATTCCACAAAAGAGCCTTTTACTTTGAGCTCGATTATCTCGATTCCTATAAGAGATATCAGTAATCTGTCAACTGATAAAATATTGGTGATACTATGGTAAACATTTTATCAGTTGACAACTTTCTGATATCTCTTACAGGAGCTGAGATAATGGAGGTCAAATTTGCCGGCTTCTATTAGATGAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTATTCTGGCTTAGCTATTCA</pcr_primer_p1>
		<pcr_primer_p2>TCAAAATTTCCCAATCTATACAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTATTCTGGCTTAGCTATTCAAAATGAGGTGATTCGCAGTTAGTAAGTTAGACATGTGGACCGGAAGAGACCATTAAAAATTGTGAATCGTGAATCTTGGAAGAAAGAAAATGACGACTTTTCTTAAAAATCAAAAGATTATTGAAAAAAATTAGAATTGCCCTTTTTCCATAGAACGTTACTTTTGCAGAATTGCAATCATTGACTTCATTAGCGATGTTGAATTTGTATAGATTGGGAAATTTTGA</canonical_amplicon>
		<polymorphic_amplicon>TTCTATTCTGGCTTAGCTATTCAAAATGAGGTGATTCGCAGTTAGTAAGTTAGACATGTGGACCGGAAGAGACCATTAAAAATTGTGAATCGTGAATCTTGGAAGAAAGAAAATGACGACTTTTCTTAAAAATCAAAAGATTATTGAAAAAAATTAGAATTGCCCTTTTTCCAWAGAACGTTACTTTTGCAGAATTGCAATCATTGACTTCATTAGCGATGTTGAATTTGTATAGATTGGGAAATTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22780</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>106049</contig_pos>
        <strand>+</strand>
        <context>GACATGTGGA[C/G]CGGAAGAGAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTAGCTATTCAAAATGAGGTGATTCGCAGTTAGTAAGTTAGACATGTGGA</left_flank>
        <right_flank>CGGAAGAGACCATTAAAAATTGTGAATCGTGAATCTTGGAAGAAAGAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATAGATAATAATGATGATGATGATAGAAATGAAATGTGTTTGGGAGGAGAAACTAGATTTCGTTCGCCCATCACCACACACTCATGATTCGAAATAGGAAGAGAGAAACATTTCGAATTGTTATTATGATGATGATGGGGAAATGGTTATGTATGTTCAGATGGCTGGAATTGTGAAAAATGTAGAAGGATTATGGTATTACCTGTGGTGTGGATTAGTTACAGTGAAGAGAGGAGATCAGGGGGGAACATATAGCCCACCGTAATCTACCCAAAGTACCCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTCAAACTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAATGAGGTGATTCGCAGTTAGTAAGTTAGACATGTGGACCGGAAGAGACCATTAAAAATTGTGAATCGTGAATCTTGGAAGAAAGAAAATGACGACTTTTCTTAAAAATCAAAAGATTATTGAAAAAAATTAGAATTGCCCTTTTTCCATAGAACGTTACTTTTGCAGAATTGCAATCATTGACTTCATTAGCGATGTTGAATTTGTATAGATTGGGAAATTTTGAAATTTGAAATTTGAAGTTTGCTAAAAGTTTTGTGTTTCTGGGGGAGAAAAAAGGAAAAACACCATGACCACCTTACGGGTATCCATGAGCACGGGACAAAGTGAGCAAGGACATTCAAAGAAAGGGTCAAGAAAAATTTGAAATACGCGCGATACTTTCTAAGGGGGTCCTAGAAAAATAACTATTTCAATGTGGTCCATAATTTTCGAAAATTTCCACATCTACCTAGTTTTCTATTCCACAAAAGAGCCTTTTACTTTGAGCTCGATTATCTCGATTCCTATAAGAGATATCAGTAATCTGTCAACTGATA</canonical>
            <polymorphic>GATAGATAATAATGATGATGATGATAGAAATGAAATGTGTTTGGGAGGAGAAACTAGATTTCGTTCGCCCATCACCACACACTCATGATTCGAAATAGGAAGAGAGAAACATTTCGAATTGTTATTATGATGATGATGGGGAAATGGTTATGTATGTTCAGATGGCTGGAATTGTGAAAAATGTAGAAGGATTATGGTATTACCTGTGGTGTGGATTAGTTACAGTGAAGAGAGGAGATCAGGGGGGAACATATAGCCCACCGTAATCTACCCAAAGTACCCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTCAAACTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAATGAGGTGATTCGCAGTTAGTAAGTTAGACATGTGGASCGGAAGAGACCATTAAAAATTGTGAATCGTGAATCTTGGAAGAAAGAAAATGACGACTTTTCTTAAAAATCAAAAGATTATTGAAAAAAATTAGAATTGCCCTTTTTCCATAGAACGTTACTTTTGCAGAATTGCAATCATTGACTTCATTAGCGATGTTGAATTTGTATAGATTGGGAAATTTTGAAATTTGAAATTTGAAGTTTGCTAAAAGTTTTGTGTTTCTGGGGGAGAAAAAAGGAAAAACACCATGACCACCTTACGGGTATCCATGAGCACGGGACAAAGTGAGCAAGGACATTCAAAGAAAGGGTCAAGAAAAATTTGAAATACGCGCGATACTTTCTAAGGGGGTCCTAGAAAAATAACTATTTCAATGTGGTCCATAATTTTCGAAAATTTCCACATCTACCTAGTTTTCTATTCCACAAAAGAGCCTTTTACTTTGAGCTCGATTATCTCGATTCCTATAAGAGATATCAGTAATCTGTCAACTGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>497 356 119 28</canonical_bands>
                <polymorphic_bands>853 119 28</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>497 356 119 28</canonical_bands>
                <polymorphic_bands>853 119 28</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>497 495 8</canonical_bands>
                <polymorphic_bands>992 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTATTCTGGCTTAGCTATTCA</pcr_primer_p1>
		<pcr_primer_p2>TCAAAATTTCCCAATCTATACAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTATTCTGGCTTAGCTATTCAAAATGAGGTGATTCGCAGTTAGTAAGTTAGACATGTGGACCGGAAGAGACCATTAAAAATTGTGAATCGTGAATCTTGGAAGAAAGAAAATGACGACTTTTCTTAAAAATCAAAAGATTATTGAAAAAAATTAGAATTGCCCTTTTTCCATAGAACGTTACTTTTGCAGAATTGCAATCATTGACTTCATTAGCGATGTTGAATTTGTATAGATTGGGAAATTTTGA</canonical_amplicon>
		<polymorphic_amplicon>TTCTATTCTGGCTTAGCTATTCAAAATGAGGTGATTCGCAGTTAGTAAGTTAGACATGTGGASCGGAAGAGACCATTAAAAATTGTGAATCGTGAATCTTGGAAGAAAGAAAATGACGACTTTTCTTAAAAATCAAAAGATTATTGAAAAAAATTAGAATTGCCCTTTTTCCATAGAACGTTACTTTTGCAGAATTGCAATCATTGACTTCATTAGCGATGTTGAATTTGTATAGATTGGGAAATTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22781</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>106032</contig_pos>
        <strand>+</strand>
        <context>TCGCAGTTAG[A/T]AAGTTAGACA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGCATTCTATTCTGGCTTAGCTATTCAAAATGAGGTGATTCGCAGTTAG</left_flank>
        <right_flank>AAGTTAGACATGTGGACCGGAAGAGACCATTAAAAATTGTGAATCGTGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATCGGTAGTTGTAGAGATAGATAATAATGATGATGATGATAGAAATGAAATGTGTTTGGGAGGAGAAACTAGATTTCGTTCGCCCATCACCACACACTCATGATTCGAAATAGGAAGAGAGAAACATTTCGAATTGTTATTATGATGATGATGGGGAAATGGTTATGTATGTTCAGATGGCTGGAATTGTGAAAAATGTAGAAGGATTATGGTATTACCTGTGGTGTGGATTAGTTACAGTGAAGAGAGGAGATCAGGGGGGAACATATAGCCCACCGTAATCTACCCAAAGTACCCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTCAAACTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAATGAGGTGATTCGCAGTTAGTAAGTTAGACATGTGGACCGGAAGAGACCATTAAAAATTGTGAATCGTGAATCTTGGAAGAAAGAAAATGACGACTTTTCTTAAAAATCAAAAGATTATTGAAAAAAATTAGAATTGCCCTTTTTCCATAGAACGTTACTTTTGCAGAATTGCAATCATTGACTTCATTAGCGATGTTGAATTTGTATAGATTGGGAAATTTTGAAATTTGAAATTTGAAGTTTGCTAAAAGTTTTGTGTTTCTGGGGGAGAAAAAAGGAAAAACACCATGACCACCTTACGGGTATCCATGAGCACGGGACAAAGTGAGCAAGGACATTCAAAGAAAGGGTCAAGAAAAATTTGAAATACGCGCGATACTTTCTAAGGGGGTCCTAGAAAAATAACTATTTCAATGTGGTCCATAATTTTCGAAAATTTCCACATCTACCTAGTTTTCTATTCCACAAAAGAGCCTTTTACTTTGAGCTCGATTATCTCGATTCCTATAAGAGATATCAG</canonical>
            <polymorphic>GAATCGGTAGTTGTAGAGATAGATAATAATGATGATGATGATAGAAATGAAATGTGTTTGGGAGGAGAAACTAGATTTCGTTCGCCCATCACCACACACTCATGATTCGAAATAGGAAGAGAGAAACATTTCGAATTGTTATTATGATGATGATGGGGAAATGGTTATGTATGTTCAGATGGCTGGAATTGTGAAAAATGTAGAAGGATTATGGTATTACCTGTGGTGTGGATTAGTTACAGTGAAGAGAGGAGATCAGGGGGGAACATATAGCCCACCGTAATCTACCCAAAGTACCCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTCAAACTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAATGAGGTGATTCGCAGTTAGWAAGTTAGACATGTGGACCGGAAGAGACCATTAAAAATTGTGAATCGTGAATCTTGGAAGAAAGAAAATGACGACTTTTCTTAAAAATCAAAAGATTATTGAAAAAAATTAGAATTGCCCTTTTTCCATAGAACGTTACTTTTGCAGAATTGCAATCATTGACTTCATTAGCGATGTTGAATTTGTATAGATTGGGAAATTTTGAAATTTGAAATTTGAAGTTTGCTAAAAGTTTTGTGTTTCTGGGGGAGAAAAAAGGAAAAACACCATGACCACCTTACGGGTATCCATGAGCACGGGACAAAGTGAGCAAGGACATTCAAAGAAAGGGTCAAGAAAAATTTGAAATACGCGCGATACTTTCTAAGGGGGTCCTAGAAAAATAACTATTTCAATGTGGTCCATAATTTTCGAAAATTTCCACATCTACCTAGTTTTCTATTCCACAAAAGAGCCTTTTACTTTGAGCTCGATTATCTCGATTCCTATAAGAGATATCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGCATTCTATTCTGGCTTA</pcr_primer_p1>
		<pcr_primer_p2>TTCCCAATCTATACAAATTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAGCATTCTATTCTGGCTTAGCTATTCAAAATGAGGTGATTCGCAGTTAGTAAGTTAGACATGTGGACCGGAAGAGACCATTAAAAATTGTGAATCGTGAATCTTGGAAGAAAGAAAATGACGACTTTTCTTAAAAATCAAAAGATTATTGAAAAAAATTAGAATTGCCCTTTTTCCATAGAACGTTACTTTTGCAGAATTGCAATCATTGACTTCATTAGCGATGTTGAATTTGTATAGATTGGGAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAGCATTCTATTCTGGCTTAGCTATTCAAAATGAGGTGATTCGCAGTTAGWAAGTTAGACATGTGGACCGGAAGAGACCATTAAAAATTGTGAATCGTGAATCTTGGAAGAAAGAAAATGACGACTTTTCTTAAAAATCAAAAGATTATTGAAAAAAATTAGAATTGCCCTTTTTCCATAGAACGTTACTTTTGCAGAATTGCAATCATTGACTTCATTAGCGATGTTGAATTTGTATAGATTGGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22782</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>106018</contig_pos>
        <strand>+</strand>
        <context>CAAAATGAGG[G/T]GATTCGCAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAATGAGG</left_flank>
        <right_flank>GATTCGCAGTTAGTAAGTTAGACATGTGGACCGGAAGAGACCATTAAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACGAAAAACCGAGGAATCGGTAGTTGTAGAGATAGATAATAATGATGATGATGATAGAAATGAAATGTGTTTGGGAGGAGAAACTAGATTTCGTTCGCCCATCACCACACACTCATGATTCGAAATAGGAAGAGAGAAACATTTCGAATTGTTATTATGATGATGATGGGGAAATGGTTATGTATGTTCAGATGGCTGGAATTGTGAAAAATGTAGAAGGATTATGGTATTACCTGTGGTGTGGATTAGTTACAGTGAAGAGAGGAGATCAGGGGGGAACATATAGCCCACCGTAATCTACCCAAAGTACCCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTCAAACTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAATGAGGTGATTCGCAGTTAGTAAGTTAGACATGTGGACCGGAAGAGACCATTAAAAATTGTGAATCGTGAATCTTGGAAGAAAGAAAATGACGACTTTTCTTAAAAATCAAAAGATTATTGAAAAAAATTAGAATTGCCCTTTTTCCATAGAACGTTACTTTTGCAGAATTGCAATCATTGACTTCATTAGCGATGTTGAATTTGTATAGATTGGGAAATTTTGAAATTTGAAATTTGAAGTTTGCTAAAAGTTTTGTGTTTCTGGGGGAGAAAAAAGGAAAAACACCATGACCACCTTACGGGTATCCATGAGCACGGGACAAAGTGAGCAAGGACATTCAAAGAAAGGGTCAAGAAAAATTTGAAATACGCGCGATACTTTCTAAGGGGGTCCTAGAAAAATAACTATTTCAATGTGGTCCATAATTTTCGAAAATTTCCACATCTACCTAGTTTTCTATTCCACAAAAGAGCCTTTTACTTTGAGCTCGATTATCTCGATTCCT</canonical>
            <polymorphic>CACGAAAAACCGAGGAATCGGTAGTTGTAGAGATAGATAATAATGATGATGATGATAGAAATGAAATGTGTTTGGGAGGAGAAACTAGATTTCGTTCGCCCATCACCACACACTCATGATTCGAAATAGGAAGAGAGAAACATTTCGAATTGTTATTATGATGATGATGGGGAAATGGTTATGTATGTTCAGATGGCTGGAATTGTGAAAAATGTAGAAGGATTATGGTATTACCTGTGGTGTGGATTAGTTACAGTGAAGAGAGGAGATCAGGGGGGAACATATAGCCCACCGTAATCTACCCAAAGTACCCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTCAAACTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAATGAGGKGATTCGCAGTTAGTAAGTTAGACATGTGGACCGGAAGAGACCATTAAAAATTGTGAATCGTGAATCTTGGAAGAAAGAAAATGACGACTTTTCTTAAAAATCAAAAGATTATTGAAAAAAATTAGAATTGCCCTTTTTCCATAGAACGTTACTTTTGCAGAATTGCAATCATTGACTTCATTAGCGATGTTGAATTTGTATAGATTGGGAAATTTTGAAATTTGAAATTTGAAGTTTGCTAAAAGTTTTGTGTTTCTGGGGGAGAAAAAAGGAAAAACACCATGACCACCTTACGGGTATCCATGAGCACGGGACAAAGTGAGCAAGGACATTCAAAGAAAGGGTCAAGAAAAATTTGAAATACGCGCGATACTTTCTAAGGGGGTCCTAGAAAAATAACTATTTCAATGTGGTCCATAATTTTCGAAAATTTCCACATCTACCTAGTTTTCTATTCCACAAAAGAGCCTTTTACTTTGAGCTCGATTATCTCGATTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>190 95 91 68 66 41 40 35 35 33 33 32 27 27 27 24 23 21 19 17 14 12 9 7 3 3 2 2 2 2</canonical_bands>
                <polymorphic_bands>190 95 93 91 68 41 40 35 35 33 33 32 27 27 24 23 21 19 17 14 12 9 7 3 3 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTAATCTGAATGTGGTTGTTAG</pcr_primer_p1>
		<pcr_primer_p2>GATTCACAATTTTTAATGGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTCAAACTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAATGAGGTGATTCGCAGTTAGTAAGTTAGACATGTGGACCGGAAGAGACCATTAAAAATTGTGAATC</canonical_amplicon>
		<polymorphic_amplicon>CCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTCAAACTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAATGAGGKGATTCGCAGTTAGTAAGTTAGACATGTGGACCGGAAGAGACCATTAAAAATTGTGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22783</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>105974</contig_pos>
        <strand>+</strand>
        <context>cgaaaCAAAA[A/C]ATTTTGAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAA</left_flank>
        <right_flank>ATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAATGAGGTGATTCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATTTCATATTATTAAATGGGCGAGAGAGTGAAGAGACGCAGACACGAAAAACCGAGGAATCGGTAGTTGTAGAGATAGATAATAATGATGATGATGATAGAAATGAAATGTGTTTGGGAGGAGAAACTAGATTTCGTTCGCCCATCACCACACACTCATGATTCGAAATAGGAAGAGAGAAACATTTCGAATTGTTATTATGATGATGATGGGGAAATGGTTATGTATGTTCAGATGGCTGGAATTGTGAAAAATGTAGAAGGATTATGGTATTACCTGTGGTGTGGATTAGTTACAGTGAAGAGAGGAGATCAGGGGGGAACATATAGCCCACCGTAATCTACCCAAAGTACCCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTCAAACTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAATGAGGTGATTCGCAGTTAGTAAGTTAGACATGTGGACCGGAAGAGACCATTAAAAATTGTGAATCGTGAATCTTGGAAGAAAGAAAATGACGACTTTTCTTAAAAATCAAAAGATTATTGAAAAAAATTAGAATTGCCCTTTTTCCATAGAACGTTACTTTTGCAGAATTGCAATCATTGACTTCATTAGCGATGTTGAATTTGTATAGATTGGGAAATTTTGAAATTTGAAATTTGAAGTTTGCTAAAAGTTTTGTGTTTCTGGGGGAGAAAAAAGGAAAAACACCATGACCACCTTACGGGTATCCATGAGCACGGGACAAAGTGAGCAAGGACATTCAAAGAAAGGGTCAAGAAAAATTTGAAATACGCGCGATACTTTCTAAGGGGGTCCTAGAAAAATAACTATTTCAATGTGGTCCATAATTTTCGAAAATTTCCACATCTACCTAGTTTTCTATT</canonical>
            <polymorphic>GGATTTCATATTATTAAATGGGCGAGAGAGTGAAGAGACGCAGACACGAAAAACCGAGGAATCGGTAGTTGTAGAGATAGATAATAATGATGATGATGATAGAAATGAAATGTGTTTGGGAGGAGAAACTAGATTTCGTTCGCCCATCACCACACACTCATGATTCGAAATAGGAAGAGAGAAACATTTCGAATTGTTATTATGATGATGATGGGGAAATGGTTATGTATGTTCAGATGGCTGGAATTGTGAAAAATGTAGAAGGATTATGGTATTACCTGTGGTGTGGATTAGTTACAGTGAAGAGAGGAGATCAGGGGGGAACATATAGCCCACCGTAATCTACCCAAAGTACCCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTCAAACTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAMATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAATGAGGTGATTCGCAGTTAGTAAGTTAGACATGTGGACCGGAAGAGACCATTAAAAATTGTGAATCGTGAATCTTGGAAGAAAGAAAATGACGACTTTTCTTAAAAATCAAAAGATTATTGAAAAAAATTAGAATTGCCCTTTTTCCATAGAACGTTACTTTTGCAGAATTGCAATCATTGACTTCATTAGCGATGTTGAATTTGTATAGATTGGGAAATTTTGAAATTTGAAATTTGAAGTTTGCTAAAAGTTTTGTGTTTCTGGGGGAGAAAAAAGGAAAAACACCATGACCACCTTACGGGTATCCATGAGCACGGGACAAAGTGAGCAAGGACATTCAAAGAAAGGGTCAAGAAAAATTTGAAATACGCGCGATACTTTCTAAGGGGGTCCTAGAAAAATAACTATTTCAATGTGGTCCATAATTTTCGAAAATTTCCACATCTACCTAGTTTTCTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>432 237 127 76 50 28 18 17 8 7</canonical_bands>
                <polymorphic_bands>432 254 127 76 50 28 18 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>191 188 127 93 71 66 53 35 34 32 28 18 17 16 10 8 7 6</canonical_bands>
                <polymorphic_bands>191 188 127 110 71 66 53 35 34 32 28 18 16 10 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTAATCTGAATGTGGTTGTTAG</pcr_primer_p1>
		<pcr_primer_p2>GATTCACAATTTTTAATGGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTCAAACTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAATGAGGTGATTCGCAGTTAGTAAGTTAGACATGTGGACCGGAAGAGACCATTAAAAATTGTGAATC</canonical_amplicon>
		<polymorphic_amplicon>CCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTCAAACTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAMATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAATGAGGTGATTCGCAGTTAGTAAGTTAGACATGTGGACCGGAAGAGACCATTAAAAATTGTGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22784</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>111063</contig_pos>
        <strand></strand>
        <context>ACTCCATCGG[A/T]TGGCAGCAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTTTTACAGAAATCGAAATAATTGAACTCAAGTAGGGGTACTCCATCGG</left_flank>
        <right_flank>TGGCAGCAGTCAACGTCGGCCATTTAGCTCAGGTGAGAGCGATCCATTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTCAATCTATCAGGATATTTTTTTATGGTAACCCAGATACGGTATCTTTCTTCCCAACTTAAAAAATTTGGGACTCTTGGCCGAGTTTTTGGAATTTTTAGGCCACCAAAAACAAAATTGTGTTAAGTAGGTTTTATTGACTGAACTTTGAGTTCAATTATCTCAATTGCCATGAAAAACATCAAAATTTTGTCCACTGATAAAATGTTGATGATATTATGATAAACATTTCATTAGTTGACAAATATTTGATATATGTTACGGGAAATAAGATAATTGAGCTCGAAGCTTTTACATTCTCGTAAATTCTCTGGTAGCAGCTGACCCTATACGTGCTCTTTGAGCTTAATTATCTCAATTCCTGTAAGAAATATCAAAATTTTGTCAACTGATAAAATGCTCATCATAATATCATCCACATTTTATCAGTTGACAGTTTTTTTGATATCTTTTACAGAAATCGAAATAATTGAACTCAAGTAGGGGTACTCCATCGGATGGCAGCAGTCAACGTCGGCCATTTAGCTCAGGTGAGAGCGATCCATTTTTAGCTCAATTATCTCAATGTCTGTAGAAGATAGCAAAAACGTGTCAACTAAAAAAATGTTAATGACATTATGATAAACATTTTATCAGTTGACAAAATTTTGATATCTTTTACAGAGATTGAGATAATTGAGCTCAACGCCTAAGCCAAATTTTGGTTGAGGATTACCTACAGTACCTCGGTATTTCTTAAAAACCCTTCTAGATTTATAGCAAAAGATATATATTTAAAATCGTCGTGTTATTCATTTTTCAAAAAAAAAATCGTGTCAGGGGGGACAAAACAAAACAAAACCTAATGAGAATTTGCTTCACTTCTTCCTTCCAGGAGTCGTGAGAGATCGAGAGAGTGTGGGAGTGAGAGAGAATTAGAGAAAACCGACACAGAGTCCCTTTATCCATTATTCAGTGCTCTCTAGAGAGAGCTCTTGTTTTCTTTTTTCACTTGTTGC</canonical>
            <polymorphic>CTGTCAATCTATCAGGATATTTTTTTATGGTAACCCAGATACGGTATCTTTCTTCCCAACTTAAAAAATTTGGGACTCTTGGCCGAGTTTTTGGAATTTTTAGGCCACCAAAAACAAAATTGTGTTAAGTAGGTTTTATTGACTGAACTTTGAGTTCAATTATCTCAATTGCCATGAAAAACATCAAAATTTTGTCCACTGATAAAATGTTGATGATATTATGATAAACATTTCATTAGTTGACAAATATTTGATATATGTTACGGGAAATAAGATAATTGAGCTCGAAGCTTTTACATTCTCGTAAATTCTCTGGTAGCAGCTGACCCTATACGTGCTCTTTGAGCTTAATTATCTCAATTCCTGTAAGAAATATCAAAATTTTGTCAACTGATAAAATGCTCATCATAATATCATCCACATTTTATCAGTTGACAGTTTTTTTGATATCTTTTACAGAAATCGAAATAATTGAACTCAAGTAGGGGTACTCCATCGGWTGGCAGCAGTCAACGTCGGCCATTTAGCTCAGGTGAGAGCGATCCATTTTTAGCTCAATTATCTCAATGTCTGTAGAAGATAGCAAAAACGTGTCAACTAAAAAAATGTTAATGACATTATGATAAACATTTTATCAGTTGACAAAATTTTGATATCTTTTACAGAGATTGAGATAATTGAGCTCAACGCCTAAGCCAAATTTTGGTTGAGGATTACCTACAGTACCTCGGTATTTCTTAAAAACCCTTCTAGATTTATAGCAAAAGATATATATTTAAAATCGTCGTGTTATTCATTTTTCAAAAAAAAAATCGTGTCAGGGGGGACAAAACAAAACAAAACCTAATGAGAATTTGCTTCACTTCTTCCTTCCAGGAGTCGTGAGAGATCGAGAGAGTGTGGGAGTGAGAGAGAATTAGAGAAAACCGACACAGAGTCCCTTTATCCATTATTCAGTGCTCTCTAGAGAGAGCTCTTGTTTTCTTTTTTCACTTGTTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTCGTAAATTCTCTGGTAGC</pcr_primer_p1>
		<pcr_primer_p2>GAGGTACTGTAGGTAATCCTCAA</pcr_primer_p2>
		<pcr_amplicon_size>432</pcr_amplicon_size>
		<canonical_amplicon>ATTCTCGTAAATTCTCTGGTAGCAGCTGACCCTATACGTGCTCTTTGAGCTTAATTATCTCAATTCCTGTAAGAAATATCAAAATTTTGTCAACTGATAAAATGCTCATCATAATATCATCCACATTTTATCAGTTGACAGTTTTTTTGATATCTTTTACAGAAATCGAAATAATTGAACTCAAGTAGGGGTACTCCATCGGATGGCAGCAGTCAACGTCGGCCATTTAGCTCAGGTGAGAGCGATCCATTTTTAGCTCAATTATCTCAATGTCTGTAGAAGATAGCAAAAACGTGTCAACTAAAAAAATGTTAATGACATTATGATAAACATTTTATCAGTTGACAAAATTTTGATATCTTTTACAGAGATTGAGATAATTGAGCTCAACGCCTAAGCCAAATTTTGGTTGAGGATTACCTACAGTACCTC</canonical_amplicon>
		<polymorphic_amplicon>ATTCTCGTAAATTCTCTGGTAGCAGCTGACCCTATACGTGCTCTTTGAGCTTAATTATCTCAATTCCTGTAAGAAATATCAAAATTTTGTCAACTGATAAAATGCTCATCATAATATCATCCACATTTTATCAGTTGACAGTTTTTTTGATATCTTTTACAGAAATCGAAATAATTGAACTCAAGTAGGGGTACTCCATCGGWTGGCAGCAGTCAACGTCGGCCATTTAGCTCAGGTGAGAGCGATCCATTTTTAGCTCAATTATCTCAATGTCTGTAGAAGATAGCAAAAACGTGTCAACTAAAAAAATGTTAATGACATTATGATAAACATTTTATCAGTTGACAAAATTTTGATATCTTTTACAGAGATTGAGATAATTGAGCTCAACGCCTAAGCCAAATTTTGGTTGAGGATTACCTACAGTACCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22785</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>157490</contig_pos>
        <strand>+</strand>
        <context>CGAAAAATGG[A/G]CGGCCCCATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCTCAGCTGTTTCAGAGAGATTAGACGAAGAAGGCGTGCCGAAAAATGG</left_flank>
        <right_flank>CGGCCCCATTTTTCGGAGCCACCATTCCGATTGGGAAATCCTTGATGTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTGGTGAAGCGTGTGCTGTGACTGTTCCCATGGCAACTATTCTCAGTTTTTTTCTAAATAGAAAAATCTGAAATTTAAAAGATCAAAAGTGCAAAAAATAAGGGGTTTCCTTTTCACTGATTGATGTGTCTAGGTCTAAAAAGGGCAGAAAAAATTTCCAGACAATTTTGAAGAAATCTATGTCTGGAATAAATTTTTTTTGGAATTTTAGGGTTTCAAATCAAAGTTCTAAATCAGAGTTCAGTTTGAAAATCATAGAGAAATCAAGGGAAATCCAAATTTTTGAAAAAAAATTTCTTCAAATTTTCCATGATTTTTGGGTCATTTTTTTCCATATTTTTATGCCATTTGTCATGATTTTTGGGTCATTTCCCACGAATTTTCGGAAAATTGCTATCTCCGATTAAGAAAAATCCGGATGTCGTTCACTTACCATTTTGGAAACATCTCTCAGCTGTTTCAGAGAGATTAGACGAAGAAGGCGTGCCGAAAAATGGACGGCCCCATTTTTCGGAGCCACCATTCCGATTGGGAAATCCTTGATGTCGAGAAGTTTCTGGAAAAATTGGATTTCAGATTTTCTAAATTTCAGATTTTCAGAAATTCAGATTTTTATAATTTCTGAATTCAATATTTTCAGTATTTCGAAATTTCCAAATTTCTGAATGTCGAATTATCAGAACTTTGGAATTTCAGATTCTCAGAATTGTTATTTTCGAAAATTCTGAATTTCAGATTTTCGGATTTCCAGAATTTCTTAATCTTAGAATTTCAGAATCTCAGAATTTCGGAATCTCAGAATTTCGGAATCTCAGAATTTCAGAATCTCCGAATTTCAGTATTCCAGAATTTCAGAATCTCAGAATTTCAGATTTCTAGAATTTCAAATCTTGAGAATCTCAAGATCTCCGAATCTCCGAATTTCAGAATCTCAGGATCTCAGAATTTCATAATTCCAGAATCCACACCTTCTTCTTCAACACCTCCTCTGTCTCCTC</canonical>
            <polymorphic>ATCTGGTGAAGCGTGTGCTGTGACTGTTCCCATGGCAACTATTCTCAGTTTTTTTCTAAATAGAAAAATCTGAAATTTAAAAGATCAAAAGTGCAAAAAATAAGGGGTTTCCTTTTCACTGATTGATGTGTCTAGGTCTAAAAAGGGCAGAAAAAATTTCCAGACAATTTTGAAGAAATCTATGTCTGGAATAAATTTTTTTTGGAATTTTAGGGTTTCAAATCAAAGTTCTAAATCAGAGTTCAGTTTGAAAATCATAGAGAAATCAAGGGAAATCCAAATTTTTGAAAAAAAATTTCTTCAAATTTTCCATGATTTTTGGGTCATTTTTTTCCATATTTTTATGCCATTTGTCATGATTTTTGGGTCATTTCCCACGAATTTTCGGAAAATTGCTATCTCCGATTAAGAAAAATCCGGATGTCGTTCACTTACCATTTTGGAAACATCTCTCAGCTGTTTCAGAGAGATTAGACGAAGAAGGCGTGCCGAAAAATGGRCGGCCCCATTTTTCGGAGCCACCATTCCGATTGGGAAATCCTTGATGTCGAGAAGTTTCTGGAAAAATTGGATTTCAGATTTTCTAAATTTCAGATTTTCAGAAATTCAGATTTTTATAATTTCTGAATTCAATATTTTCAGTATTTCGAAATTTCCAAATTTCTGAATGTCGAATTATCAGAACTTTGGAATTTCAGATTCTCAGAATTGTTATTTTCGAAAATTCTGAATTTCAGATTTTCGGATTTCCAGAATTTCTTAATCTTAGAATTTCAGAATCTCAGAATTTCGGAATCTCAGAATTTCGGAATCTCAGAATTTCAGAATCTCCGAATTTCAGTATTCCAGAATTTCAGAATCTCAGAATTTCAGATTTCTAGAATTTCAAATCTTGAGAATCTCAAGATCTCCGAATCTCCGAATTTCAGAATCTCAGGATCTCAGAATTTCATAATTCCAGAATCCACACCTTCTTCTTCAACACCTCCTCTGTCTCCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGATTTTTGGGTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>AAACTTCTCGACATCAAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CATGATTTTTGGGTCATTTTTTTCCATATTTTTATGCCATTTGTCATGATTTTTGGGTCATTTCCCACGAATTTTCGGAAAATTGCTATCTCCGATTAAGAAAAATCCGGATGTCGTTCACTTACCATTTTGGAAACATCTCTCAGCTGTTTCAGAGAGATTAGACGAAGAAGGCGTGCCGAAAAATGGACGGCCCCATTTTTCGGAGCCACCATTCCGATTGGGAAATCCTTGATGTCGAGAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>CATGATTTTTGGGTCATTTTTTTCCATATTTTTATGCCATTTGTCATGATTTTTGGGTCATTTCCCACGAATTTTCGGAAAATTGCTATCTCCGATTAAGAAAAATCCGGATGTCGTTCACTTACCATTTTGGAAACATCTCTCAGCTGTTTCAGAGAGATTAGACGAAGAAGGCGTGCCGAAAAATGGRCGGCCCCATTTTTCGGAGCCACCATTCCGATTGGGAAATCCTTGATGTCGAGAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22786</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>160486</contig_pos>
        <strand></strand>
        <context>GGTTTTTCAG[C/T]TTTTTCGTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTGTGTAGTTTGTAGTTTTTGTAGCCTTTGTAGTCTTTGGTTTTTCAG</left_flank>
        <right_flank>TTTTTCGTTCAAGTTTTGGTTTTTTAAGTTCTGAGACATCCGGACAAACC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGTTGTGTTTCTCGGCCACCAGATCACAATGGCCTAACTTCAAGGGTTTCCTAGGCCGTCATGACCTAACTTTTCGTATTCTAGGCCACCTAGAAAAATATGGCTTAGTTTTATTAAGGGATTTCTAGGCCACCAAATCTAACGTGGCCTCGTTTTCTGGATTTTTGTATTTCTAGGCCGTCAAGACAAGTATAGCCTAGTTTCTTGGGAAGAGGATTTCTAGGCCACCCACTCAAAATTGTCTAATTTTCCAGATTTTTGCATTTTCTAGGCCACCAGGTCACAATGGCCTAACTTTTAGGGTTTTTTAAGAAAAAATTTTAGTGGCGGAGCTTAAATCACAATCTTCTCAAATTAGGCTCCGCCCACTTTTCCAGGGAATGTTTCTCTCGATATTTGAGGGCCCTCAAAACTTTGGTTTCTGGAGTTCAGACAGACGAGAGTTGAAATTGTGTAGTTTGTAGTTTTTGTAGCCTTTGTAGTCTTTGGTTTTTCAGCTTTTTCGTTCAAGTTTTGGTTTTTTAAGTTCTGAGACATCCGGACAAACCGACACACATTGAGTTATAAACCACATTTGGCTCAAAATTCCTTTTAAAAATTAGCCCAAAAATCACTTTATTCAAAATTTTTCAAAATTTTAAATTCGAAATTTCTAGGCCATTTTGGATAATTTAGGCCACCATACTCACATCTCCACAGTCTCAGTTGGCCGGTGTTTTCCAGCTGCATACACTGATAGCTTCTTTTTCTTGGCCATCATATCGTCGGCATCCGGTTCGGATTGGTAGAGAACCAGTGGGTTGGAGGTTTCCACCTGGAGAGAAAAATGTATATACAGTAGAACCTGTATTAGAAGGGCGCCTCTAATAGAAGGGCCATACGGGAGGGGTTTGGAAAAAGAGAAGGGCCCCCTGTAATAGATTGACATCAGTAATAGAAGGGCCGGCCCTTCTATTACAGGTTTTACGGTATTTGAGATTTTTAAAAATCTTACCTCA</canonical>
            <polymorphic>ATTGTTGTGTTTCTCGGCCACCAGATCACAATGGCCTAACTTCAAGGGTTTCCTAGGCCGTCATGACCTAACTTTTCGTATTCTAGGCCACCTAGAAAAATATGGCTTAGTTTTATTAAGGGATTTCTAGGCCACCAAATCTAACGTGGCCTCGTTTTCTGGATTTTTGTATTTCTAGGCCGTCAAGACAAGTATAGCCTAGTTTCTTGGGAAGAGGATTTCTAGGCCACCCACTCAAAATTGTCTAATTTTCCAGATTTTTGCATTTTCTAGGCCACCAGGTCACAATGGCCTAACTTTTAGGGTTTTTTAAGAAAAAATTTTAGTGGCGGAGCTTAAATCACAATCTTCTCAAATTAGGCTCCGCCCACTTTTCCAGGGAATGTTTCTCTCGATATTTGAGGGCCCTCAAAACTTTGGTTTCTGGAGTTCAGACAGACGAGAGTTGAAATTGTGTAGTTTGTAGTTTTTGTAGCCTTTGTAGTCTTTGGTTTTTCAGYTTTTTCGTTCAAGTTTTGGTTTTTTAAGTTCTGAGACATCCGGACAAACCGACACACATTGAGTTATAAACCACATTTGGCTCAAAATTCCTTTTAAAAATTAGCCCAAAAATCACTTTATTCAAAATTTTTCAAAATTTTAAATTCGAAATTTCTAGGCCATTTTGGATAATTTAGGCCACCATACTCACATCTCCACAGTCTCAGTTGGCCGGTGTTTTCCAGCTGCATACACTGATAGCTTCTTTTTCTTGGCCATCATATCGTCGGCATCCGGTTCGGATTGGTAGAGAACCAGTGGGTTGGAGGTTTCCACCTGGAGAGAAAAATGTATATACAGTAGAACCTGTATTAGAAGGGCGCCTCTAATAGAAGGGCCATACGGGAGGGGTTTGGAAAAAGAGAAGGGCCCCCTGTAATAGATTGACATCAGTAATAGAAGGGCCGGCCCTTCTATTACAGGTTTTACGGTATTTGAGATTTTTAAAAATCTTACCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>334 259 226 165 16</canonical_bands>
                <polymorphic_bands>391 334 259 16</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>122 81 70 55 52 48 44 43 35 33 32 30 30 29 27 26 24 24 23 19 18 18 18 17 17 17 16 14 14 4</canonical_bands>
                <polymorphic_bands>122 105 70 55 52 48 44 43 35 33 32 30 30 29 27 26 24 23 19 18 18 18 17 17 17 16 14 14 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTAAATCACAATCTTCTCAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGCCAAATGTGGTTTATAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTTAAATCACAATCTTCTCAAATTAGGCTCCGCCCACTTTTCCAGGGAATGTTTCTCTCGATATTTGAGGGCCCTCAAAACTTTGGTTTCTGGAGTTCAGACAGACGAGAGTTGAAATTGTGTAGTTTGTAGTTTTTGTAGCCTTTGTAGTCTTTGGTTTTTCAGCTTTTTCGTTCAAGTTTTGGTTTTTTAAGTTCTGAGACATCCGGACAAACCGACACACATTGAGTTATAAACCACATTTGGCTC</canonical_amplicon>
		<polymorphic_amplicon>GCTTAAATCACAATCTTCTCAAATTAGGCTCCGCCCACTTTTCCAGGGAATGTTTCTCTCGATATTTGAGGGCCCTCAAAACTTTGGTTTCTGGAGTTCAGACAGACGAGAGTTGAAATTGTGTAGTTTGTAGTTTTTGTAGCCTTTGTAGTCTTTGGTTTTTCAGYTTTTTCGTTCAAGTTTTGGTTTTTTAAGTTCTGAGACATCCGGACAAACCGACACACATTGAGTTATAAACCACATTTGGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22787</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>160392</contig_pos>
        <strand>+</strand>
        <context>TATTTGAGGG[C/T]CCTCAAAACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTAGGCTCCGCCCACTTTTCCAGGGAATGTTTCTCTCGATATTTGAGGG</left_flank>
        <right_flank>CCTCAAAACTTTGGTTTCTGGAGTTCAGACAGACGAGAGTTGAAATTGTG</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTTGGGAGGAGAATTTCTAGGCCACTTGGTCAAAGTAGCCTAAATTTTGTGGTTTCTAGGCCACCAAACATATTGTGGGCTAGTTTTCCAAATTGTTGTGTTTCTCGGCCACCAGATCACAATGGCCTAACTTCAAGGGTTTCCTAGGCCGTCATGACCTAACTTTTCGTATTCTAGGCCACCTAGAAAAATATGGCTTAGTTTTATTAAGGGATTTCTAGGCCACCAAATCTAACGTGGCCTCGTTTTCTGGATTTTTGTATTTCTAGGCCGTCAAGACAAGTATAGCCTAGTTTCTTGGGAAGAGGATTTCTAGGCCACCCACTCAAAATTGTCTAATTTTCCAGATTTTTGCATTTTCTAGGCCACCAGGTCACAATGGCCTAACTTTTAGGGTTTTTTAAGAAAAAATTTTAGTGGCGGAGCTTAAATCACAATCTTCTCAAATTAGGCTCCGCCCACTTTTCCAGGGAATGTTTCTCTCGATATTTGAGGGCCCTCAAAACTTTGGTTTCTGGAGTTCAGACAGACGAGAGTTGAAATTGTGTAGTTTGTAGTTTTTGTAGCCTTTGTAGTCTTTGGTTTTTCAGCTTTTTCGTTCAAGTTTTGGTTTTTTAAGTTCTGAGACATCCGGACAAACCGACACACATTGAGTTATAAACCACATTTGGCTCAAAATTCCTTTTAAAAATTAGCCCAAAAATCACTTTATTCAAAATTTTTCAAAATTTTAAATTCGAAATTTCTAGGCCATTTTGGATAATTTAGGCCACCATACTCACATCTCCACAGTCTCAGTTGGCCGGTGTTTTCCAGCTGCATACACTGATAGCTTCTTTTTCTTGGCCATCATATCGTCGGCATCCGGTTCGGATTGGTAGAGAACCAGTGGGTTGGAGGTTTCCACCTGGAGAGAAAAATGTATATACAGTAGAACCTGTATTAGAAGGGCGCCTCTAATAGAAGGGCCATACGGGAGGGGTTTGGAAAAAGAGAA</canonical>
            <polymorphic>TTTCTTGGGAGGAGAATTTCTAGGCCACTTGGTCAAAGTAGCCTAAATTTTGTGGTTTCTAGGCCACCAAACATATTGTGGGCTAGTTTTCCAAATTGTTGTGTTTCTCGGCCACCAGATCACAATGGCCTAACTTCAAGGGTTTCCTAGGCCGTCATGACCTAACTTTTCGTATTCTAGGCCACCTAGAAAAATATGGCTTAGTTTTATTAAGGGATTTCTAGGCCACCAAATCTAACGTGGCCTCGTTTTCTGGATTTTTGTATTTCTAGGCCGTCAAGACAAGTATAGCCTAGTTTCTTGGGAAGAGGATTTCTAGGCCACCCACTCAAAATTGTCTAATTTTCCAGATTTTTGCATTTTCTAGGCCACCAGGTCACAATGGCCTAACTTTTAGGGTTTTTTAAGAAAAAATTTTAGTGGCGGAGCTTAAATCACAATCTTCTCAAATTAGGCTCCGCCCACTTTTCCAGGGAATGTTTCTCTCGATATTTGAGGGYCCTCAAAACTTTGGTTTCTGGAGTTCAGACAGACGAGAGTTGAAATTGTGTAGTTTGTAGTTTTTGTAGCCTTTGTAGTCTTTGGTTTTTCAGCTTTTTCGTTCAAGTTTTGGTTTTTTAAGTTCTGAGACATCCGGACAAACCGACACACATTGAGTTATAAACCACATTTGGCTCAAAATTCCTTTTAAAAATTAGCCCAAAAATCACTTTATTCAAAATTTTTCAAAATTTTAAATTCGAAATTTCTAGGCCATTTTGGATAATTTAGGCCACCATACTCACATCTCCACAGTCTCAGTTGGCCGGTGTTTTCCAGCTGCATACACTGATAGCTTCTTTTTCTTGGCCATCATATCGTCGGCATCCGGTTCGGATTGGTAGAGAACCAGTGGGTTGGAGGTTTCCACCTGGAGAGAAAAATGTATATACAGTAGAACCTGTATTAGAAGGGCGCCTCTAATAGAAGGGCCATACGGGAGGGGTTTGGAAAAAGAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGGCCC</site>
                <isoschizomers>
                    <enzyme>ApaI</enzyme>
                    <enzyme>Bsp120I</enzyme>
                    <enzyme>PspOMI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>254 122 114 48 48 47 44 44 39 33 30 30 29 24 23 19 18 17 17</canonical_bands>
                <polymorphic_bands>368 122 48 48 47 44 44 39 33 30 30 29 24 23 19 18 17 17</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>122 81 70 55 48 44 43 33 30 30 29 29 29 27 26 24 24 24 23 22 19 19 18 18 18 17 17 17 16 14 14</canonical_bands>
                <polymorphic_bands>122 114 81 55 48 43 33 30 30 29 29 29 27 26 24 24 24 23 22 19 19 18 18 18 17 17 17 16 14 14</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>502 498</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 472 28</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTAAATCACAATCTTCTCAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGCCAAATGTGGTTTATAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTTAAATCACAATCTTCTCAAATTAGGCTCCGCCCACTTTTCCAGGGAATGTTTCTCTCGATATTTGAGGGCCCTCAAAACTTTGGTTTCTGGAGTTCAGACAGACGAGAGTTGAAATTGTGTAGTTTGTAGTTTTTGTAGCCTTTGTAGTCTTTGGTTTTTCAGCTTTTTCGTTCAAGTTTTGGTTTTTTAAGTTCTGAGACATCCGGACAAACCGACACACATTGAGTTATAAACCACATTTGGCTC</canonical_amplicon>
		<polymorphic_amplicon>GCTTAAATCACAATCTTCTCAAATTAGGCTCCGCCCACTTTTCCAGGGAATGTTTCTCTCGATATTTGAGGGYCCTCAAAACTTTGGTTTCTGGAGTTCAGACAGACGAGAGTTGAAATTGTGTAGTTTGTAGTTTTTGTAGCCTTTGTAGTCTTTGGTTTTTCAGCTTTTTCGTTCAAGTTTTGGTTTTTTAAGTTCTGAGACATCCGGACAAACCGACACACATTGAGTTATAAACCACATTTGGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22789</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>91039</contig_pos>
        <strand>+</strand>
        <context>CCAGAAGGCG[C/T]CAACTAGAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGAAATTTCAGAAAGATTTTTCAAAAAGAAAAACGGGATCCAGAAGGCG</left_flank>
        <right_flank>CAACTAGAGGATGTTCAGATTTTAGATTTCATCCTTTATTTCTTAAAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGAAAAAAGTGTCAATTTCTTTGAACTGAATCTGCAATAGAGCATGAAATGACTTTAATGAGACTGAACTTGGAGAAAATGCAAAGAGGAAGAAGAACTTCATTGTCAAATAAAGAACACAAAAGTGAAGACTGATGTATAGTTAAATGAAGCGTGCTGTTATTTTGTACACTGTTTTCAAATGAAATACCGTTTTTAGAAAATGGTATTGGTGGTCTTCGAAGAATCAGAAAAAAGGAATGGGAGTATTTTTTGGTATTTCTTGCCAGGTTACAAGAACCCAATTCTTTTTCGGAAATTCGTTATCGTTCCAAAGGGAAAATACAGTTTTTATTCTAAAAACTGGGTGTTGGCTACCAATTTGGTATCATTCGAGACCGCTGAATTAATTATTTCAACAGTTCTAAACAAGTCTCGTTTTTAAAAGGAAAGTAAGCATTCCAGAGTTTGAAATTTCAGAAAGATTTTTCAAAAAGAAAAACGGGATCCAGAAGGCGTCAACTAGAGGATGTTCAGATTTTAGATTTCATCCTTTATTTCTTAAAAATGAGACTGAACATCTATAACAATTATTATTATGCTAGTGCGAAAATCGGGGCTCTGGAAAAAGAAATTTCGGTTGCCGCGGGCAAAGGTCCCACAGTGACAACTACCGTAACCTAAAATATGTTTATTGCCTCCATTTTCACTGCTTTTTGTCGAATTTTCCAATTTTTTCCTCAGAAAAGTCGGAAAATTAACATTTCTATAGGGAAGAAATTGACTGAAAATGCGCAAAAATCGAGAAAAATAAACCGGAAAATGAAAATATTTCTGGGTTACGGTAGCAGACGTTGTGGGACCTTCGGCCACGGACACCGGCGTTTCTCTCCCACAGCTCCGATATTCAGTTTTCCTACCCGTAACATACCGTAAGGTGCTTCGAAAAATAAAAGCCCACCCTCTAATAGAAGCCCATGGGCTTCTATTAGAGGAAATAGGGTAATTTAAAATTTCAA</canonical>
            <polymorphic>TGAGAAAAAAGTGTCAATTTCTTTGAACTGAATCTGCAATAGAGCATGAAATGACTTTAATGAGACTGAACTTGGAGAAAATGCAAAGAGGAAGAAGAACTTCATTGTCAAATAAAGAACACAAAAGTGAAGACTGATGTATAGTTAAATGAAGCGTGCTGTTATTTTGTACACTGTTTTCAAATGAAATACCGTTTTTAGAAAATGGTATTGGTGGTCTTCGAAGAATCAGAAAAAAGGAATGGGAGTATTTTTTGGTATTTCTTGCCAGGTTACAAGAACCCAATTCTTTTTCGGAAATTCGTTATCGTTCCAAAGGGAAAATACAGTTTTTATTCTAAAAACTGGGTGTTGGCTACCAATTTGGTATCATTCGAGACCGCTGAATTAATTATTTCAACAGTTCTAAACAAGTCTCGTTTTTAAAAGGAAAGTAAGCATTCCAGAGTTTGAAATTTCAGAAAGATTTTTCAAAAAGAAAAACGGGATCCAGAAGGCGYCAACTAGAGGATGTTCAGATTTTAGATTTCATCCTTTATTTCTTAAAAATGAGACTGAACATCTATAACAATTATTATTATGCTAGTGCGAAAATCGGGGCTCTGGAAAAAGAAATTTCGGTTGCCGCGGGCAAAGGTCCCACAGTGACAACTACCGTAACCTAAAATATGTTTATTGCCTCCATTTTCACTGCTTTTTGTCGAATTTTCCAATTTTTTCCTCAGAAAAGTCGGAAAATTAACATTTCTATAGGGAAGAAATTGACTGAAAATGCGCAAAAATCGAGAAAAATAAACCGGAAAATGAAAATATTTCTGGGTTACGGTAGCAGACGTTGTGGGACCTTCGGCCACGGACACCGGCGTTTCTCTCCCACAGCTCCGATATTCAGTTTTCCTACCCGTAACATACCGTAAGGTGCTTCGAAAAATAAAAGCCCACCCTCTAATAGAAGCCCATGGGCTTCTATTAGAGGAAATAGGGTAATTTAAAATTTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 330 171</canonical_bands>
                <polymorphic_bands>829 171</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTATTCTAAAAACTGGGTGTTG</pcr_primer_p1>
		<pcr_primer_p2>AATTGTTATAGATGTTCAGTCTCATT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTATTCTAAAAACTGGGTGTTGGCTACCAATTTGGTATCATTCGAGACCGCTGAATTAATTATTTCAACAGTTCTAAACAAGTCTCGTTTTTAAAAGGAAAGTAAGCATTCCAGAGTTTGAAATTTCAGAAAGATTTTTCAAAAAGAAAAACGGGATCCAGAAGGCGTCAACTAGAGGATGTTCAGATTTTAGATTTCATCCTTTATTTCTTAAAAATGAGACTGAACATCTATAACAATT</canonical_amplicon>
		<polymorphic_amplicon>TTTATTCTAAAAACTGGGTGTTGGCTACCAATTTGGTATCATTCGAGACCGCTGAATTAATTATTTCAACAGTTCTAAACAAGTCTCGTTTTTAAAAGGAAAGTAAGCATTCCAGAGTTTGAAATTTCAGAAAGATTTTTCAAAAAGAAAAACGGGATCCAGAAGGCGYCAACTAGAGGATGTTCAGATTTTAGATTTCATCCTTTATTTCTTAAAAATGAGACTGAACATCTATAACAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22790</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>92497</contig_pos>
        <strand></strand>
        <context>GACAACATGA[C/T]ACATACAGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAGAGGAAAAGGGAACAGTATTTGTACAAGCAAACATTTGACAACATGA</left_flank>
        <right_flank>ACATACAGGTGACCATGAGTGATGAGAGAATCCACTCAAAAATATTCACT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAACCACATATCCAGTAGAATGTCTTCTAGAAGTCATACTTTTTCTCCGTCCAAATGTCTTCTAGTTCTTTTTTCTTCTTCCAAATGTCTACAGTTTCCGGAAGAGAGACGTCTCTAATTTTCGATCAAATGAGCGAACCTCATTCCGAATTGTCCCATCTGTCGGTGTGGCCTTCGCTCCACGAAGAACTACTGTCGTTTCGTATGTGCAATGAACCCTCTAATTTATGTGTATCTTACAACAACGAAACGAGAGAATACAATTGAAAAAAAAACAGAGAGAGTGAAAATGAGATGGATAGAATAGAAGGATAGAAGTATTGACAAATCAATAAATTACAGGGACTTAGAAAACAGAAACGGGCACCGGTCCGTTTGGATCCATAAGCAGGAAAAGAAGAAAAAGAAGAGAGGACAGCTGCATTTGATCACAAAAGATTTCCCATGAGAAGAGGAAAAGGGAACAGTATTTGTACAAGCAAACATTTGACAACATGACACATACAGGTGACCATGAGTGATGAGAGAATCCACTCAAAAATATTCACTACGTTTGAATTTTTACCAAAATGGATCAATTTTTTGAAAGTTTAGCTGGAAGACTTGACATATTCAAAAATATTTTTTAACAGAAAGTGCTCTACAATTGAACAATTTTCTGAAAATGCCAAAAATTTCACAAAATTAAGAAATTCCCATAAATAATTATAAAATCCTAAAATTCGAAAAATTAAAAATTTGAAAAATACTAAAAAAGTCCTAAAAATTCCGAACATTATAATTTTTCAAGAATTCAAAAATCCAAATTTCCCGAAAATTCAAAAGTTTCAAAATCCAATAAAAAAATTACAAATCCAGACATAAAAATTTTTCAGAAATTCAAAAATCCTAAAAAATCTAAAATTCCGAAAATTCGACCTTCAAATTTTTCAGGAGTTCAAAAATGAGACATATTCAAACATCCAAACATTTAAAGTTTTCAGTAATTTGAAAGTCATA</canonical>
            <polymorphic>ACAACCACATATCCAGTAGAATGTCTTCTAGAAGTCATACTTTTTCTCCGTCCAAATGTCTTCTAGTTCTTTTTTCTTCTTCCAAATGTCTACAGTTTCCGGAAGAGAGACGTCTCTAATTTTCGATCAAATGAGCGAACCTCATTCCGAATTGTCCCATCTGTCGGTGTGGCCTTCGCTCCACGAAGAACTACTGTCGTTTCGTATGTGCAATGAACCCTCTAATTTATGTGTATCTTACAACAACGAAACGAGAGAATACAATTGAAAAAAAAACAGAGAGAGTGAAAATGAGATGGATAGAATAGAAGGATAGAAGTATTGACAAATCAATAAATTACAGGGACTTAGAAAACAGAAACGGGCACCGGTCCGTTTGGATCCATAAGCAGGAAAAGAAGAAAAAGAAGAGAGGACAGCTGCATTTGATCACAAAAGATTTCCCATGAGAAGAGGAAAAGGGAACAGTATTTGTACAAGCAAACATTTGACAACATGAYACATACAGGTGACCATGAGTGATGAGAGAATCCACTCAAAAATATTCACTACGTTTGAATTTTTACCAAAATGGATCAATTTTTTGAAAGTTTAGCTGGAAGACTTGACATATTCAAAAATATTTTTTAACAGAAAGTGCTCTACAATTGAACAATTTTCTGAAAATGCCAAAAATTTCACAAAATTAAGAAATTCCCATAAATAATTATAAAATCCTAAAATTCGAAAAATTAAAAATTTGAAAAATACTAAAAAAGTCCTAAAAATTCCGAACATTATAATTTTTCAAGAATTCAAAAATCCAAATTTCCCGAAAATTCAAAAGTTTCAAAATCCAATAAAAAAATTACAAATCCAGACATAAAAATTTTTCAGAAATTCAAAAATCCTAAAAAATCTAAAATTCCGAAAATTCGACCTTCAAATTTTTCAGGAGTTCAAAAATGAGACATATTCAAACATCCAAACATTTAAAGTTTTCAGTAATTTGAAAGTCATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>320 162 91 80 69 65 54 41 27 23 14 13 12 10 10 7 2</canonical_bands>
                <polymorphic_bands>320 162 91 80 79 65 54 41 27 23 14 13 12 10 7 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAGAAAAAGAAGAGAGGACAG</pcr_primer_p1>
		<pcr_primer_p2>TTGTAGAGCACTTTCTGTTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGAAGAAAAAGAAGAGAGGACAGCTGCATTTGATCACAAAAGATTTCCCATGAGAAGAGGAAAAGGGAACAGTATTTGTACAAGCAAACATTTGACAACATGACACATACAGGTGACCATGAGTGATGAGAGAATCCACTCAAAAATATTCACTACGTTTGAATTTTTACCAAAATGGATCAATTTTTTGAAAGTTTAGCTGGAAGACTTGACATATTCAAAAATATTTTTTAACAGAAAGTGCTCTACAA</canonical_amplicon>
		<polymorphic_amplicon>AGAAGAAAAAGAAGAGAGGACAGCTGCATTTGATCACAAAAGATTTCCCATGAGAAGAGGAAAAGGGAACAGTATTTGTACAAGCAAACATTTGACAACATGAYACATACAGGTGACCATGAGTGATGAGAGAATCCACTCAAAAATATTCACTACGTTTGAATTTTTACCAAAATGGATCAATTTTTTGAAAGTTTAGCTGGAAGACTTGACATATTCAAAAATATTTTTTAACAGAAAGTGCTCTACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22791</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>114169</contig_pos>
        <strand>+</strand>
        <context>TAGACCGTAT[C/T]TAAATCGACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATGGATATAATTTATATGACCGAAAATAATCTACGGAATAGACCGTAT</left_flank>
        <right_flank>TAAATCGACAGATGTTCCTCCGGATGTCTCATTGACCTTTAATTATTACC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCAAGAGCGTGTAGTCCGAGTGGAAAACTTTTTGTGGCGCCGCGATGATTTTTTCGGTTCAAATACCTTTTTTCTCTCGGTTTTTTCTCACAGTTAAACAGGGAATTTTCAGTTTCCGTTGTTTTTTTTTGCAGTTTCTTGCCGATGTTAAAATTAGAAAATTAGTAGTATTATAAAAAACGTCGTAGAAGAATTGCATTGTTTCTCTCTTATGATGTGTCGTCTTAACGATATATTCACCCGTCCTCCTGCGTCTCGAAGAGTAGTTCATCACCGCATTGATTTTTTGTCTCCTTCCTATCCAGTTAGCTGATCAATACCACGTTTTATTGCAAACGCAAGATCTTCATGCGGTTTCTATGAAAGCGAAGGGAAACTTGAGAAGCGCATGAAAAATTTTCTTGGTCAGGAACAGGAAGTGTTCAAAAGCTTTTAGCAGCCGTATTTTAATGGATATAATTTATATGACCGAAAATAATCTACGGAATAGACCGTATCTAAATCGACAGATGTTCCTCCGGATGTCTCATTGACCTTTAATTATTACCGGGGCGCTGTGGCCCTCAGAAGGCTTCACTCACCTGCTTCCGTCATCGCTGCCGTCCTTGTGTTAGTCGTCTTCAGTTCACAGCTGCTGTCTCTCCGTCTCTTATTTAGCGCTCGAGTGACGTCTCACCTGTTGCCTGCAAACCTCCCCGACAGCCTGCACTCTTCGTTGTCTTTCTCTCTCTCAACCGCTTTGTAGTTTTTTTGTCGACTAAATTCCCTGTTACTCCCAAACGAACATTTGCTGCCAAGTTTTTAACCAATCGTTCTTCTACAGAAAAATTCACAACTGCAAGGCCAAATTTGAGCACTATTAAAACTCTCAATTTAGCAGGTCGAAAGAACAATTGTCACATCGCACCCAAAAAGTCCTTCTGATTTTTGAACTAAATAAGGCCGAACAGTATATGTGCCGTTCCGAATTGTTTTTGTAGGAGACCGCGCAACCTCCA</canonical>
            <polymorphic>ATTCAAGAGCGTGTAGTCCGAGTGGAAAACTTTTTGTGGCGCCGCGATGATTTTTTCGGTTCAAATACCTTTTTTCTCTCGGTTTTTTCTCACAGTTAAACAGGGAATTTTCAGTTTCCGTTGTTTTTTTTTGCAGTTTCTTGCCGATGTTAAAATTAGAAAATTAGTAGTATTATAAAAAACGTCGTAGAAGAATTGCATTGTTTCTCTCTTATGATGTGTCGTCTTAACGATATATTCACCCGTCCTCCTGCGTCTCGAAGAGTAGTTCATCACCGCATTGATTTTTTGTCTCCTTCCTATCCAGTTAGCTGATCAATACCACGTTTTATTGCAAACGCAAGATCTTCATGCGGTTTCTATGAAAGCGAAGGGAAACTTGAGAAGCGCATGAAAAATTTTCTTGGTCAGGAACAGGAAGTGTTCAAAAGCTTTTAGCAGCCGTATTTTAATGGATATAATTTATATGACCGAAAATAATCTACGGAATAGACCGTATYTAAATCGACAGATGTTCCTCCGGATGTCTCATTGACCTTTAATTATTACCGGGGCGCTGTGGCCCTCAGAAGGCTTCACTCACCTGCTTCCGTCATCGCTGCCGTCCTTGTGTTAGTCGTCTTCAGTTCACAGCTGCTGTCTCTCCGTCTCTTATTTAGCGCTCGAGTGACGTCTCACCTGTTGCCTGCAAACCTCCCCGACAGCCTGCACTCTTCGTTGTCTTTCTCTCTCTCAACCGCTTTGTAGTTTTTTTGTCGACTAAATTCCCTGTTACTCCCAAACGAACATTTGCTGCCAAGTTTTTAACCAATCGTTCTTCTACAGAAAAATTCACAACTGCAAGGCCAAATTTGAGCACTATTAAAACTCTCAATTTAGCAGGTCGAAAGAACAATTGTCACATCGCACCCAAAAAGTCCTTCTGATTTTTGAACTAAATAAGGCCGAACAGTATATGTGCCGTTCCGAATTGTTTTTGTAGGAGACCGCGCAACCTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAACAGGAAGTGTTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTAAATAAGAGACGGAGAGACAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGAACAGGAAGTGTTCAAAAGCTTTTAGCAGCCGTATTTTAATGGATATAATTTATATGACCGAAAATAATCTACGGAATAGACCGTATCTAAATCGACAGATGTTCCTCCGGATGTCTCATTGACCTTTAATTATTACCGGGGCGCTGTGGCCCTCAGAAGGCTTCACTCACCTGCTTCCGTCATCGCTGCCGTCCTTGTGTTAGTCGTCTTCAGTTCACAGCTGCTGTCTCTCCGTCTCTTATTTAG</canonical_amplicon>
		<polymorphic_amplicon>GGAACAGGAAGTGTTCAAAAGCTTTTAGCAGCCGTATTTTAATGGATATAATTTATATGACCGAAAATAATCTACGGAATAGACCGTATYTAAATCGACAGATGTTCCTCCGGATGTCTCATTGACCTTTAATTATTACCGGGGCGCTGTGGCCCTCAGAAGGCTTCACTCACCTGCTTCCGTCATCGCTGCCGTCCTTGTGTTAGTCGTCTTCAGTTCACAGCTGCTGTCTCTCCGTCTCTTATTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22792</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>114397</contig_pos>
        <strand>+</strand>
        <context>TTGTCTTTCT[C/T]TCTCTCAACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTGTTGCCTGCAAACCTCCCCGACAGCCTGCACTCTTCGTTGTCTTTCT</left_flank>
        <right_flank>TCTCTCAACCGCTTTGTAGTTTTTTTGTCGACTAAATTCCCTGTTACTCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGATATATTCACCCGTCCTCCTGCGTCTCGAAGAGTAGTTCATCACCGCATTGATTTTTTGTCTCCTTCCTATCCAGTTAGCTGATCAATACCACGTTTTATTGCAAACGCAAGATCTTCATGCGGTTTCTATGAAAGCGAAGGGAAACTTGAGAAGCGCATGAAAAATTTTCTTGGTCAGGAACAGGAAGTGTTCAAAAGCTTTTAGCAGCCGTATTTTAATGGATATAATTTATATGACCGAAAATAATCTACGGAATAGACCGTATCTAAATCGACAGATGTTCCTCCGGATGTCTCATTGACCTTTAATTATTACCGGGGCGCTGTGGCCCTCAGAAGGCTTCACTCACCTGCTTCCGTCATCGCTGCCGTCCTTGTGTTAGTCGTCTTCAGTTCACAGCTGCTGTCTCTCCGTCTCTTATTTAGCGCTCGAGTGACGTCTCACCTGTTGCCTGCAAACCTCCCCGACAGCCTGCACTCTTCGTTGTCTTTCTCTCTCTCAACCGCTTTGTAGTTTTTTTGTCGACTAAATTCCCTGTTACTCCCAAACGAACATTTGCTGCCAAGTTTTTAACCAATCGTTCTTCTACAGAAAAATTCACAACTGCAAGGCCAAATTTGAGCACTATTAAAACTCTCAATTTAGCAGGTCGAAAGAACAATTGTCACATCGCACCCAAAAAGTCCTTCTGATTTTTGAACTAAATAAGGCCGAACAGTATATGTGCCGTTCCGAATTGTTTTTGTAGGAGACCGCGCAACCTCCATTTGCTTCTTCTTTAAACGTTTAGTTAGTTTTTTCTACAGATTTACAAATCCTCTTTTTCGTTAGATAAAATGACATTTCTCTGACAGAATCTCTTTGACGAGTGTTGTAAGCTGAGATGGAAAATAATGCCCGAAAACCTTGCCAGAACGAGAAAGTCGATGCCGATTGAATCGAATCCTTTTATAGCTTCGTTTCTTTTTGAATCACCTTCTTCGTAGTAAACGAA</canonical>
            <polymorphic>AACGATATATTCACCCGTCCTCCTGCGTCTCGAAGAGTAGTTCATCACCGCATTGATTTTTTGTCTCCTTCCTATCCAGTTAGCTGATCAATACCACGTTTTATTGCAAACGCAAGATCTTCATGCGGTTTCTATGAAAGCGAAGGGAAACTTGAGAAGCGCATGAAAAATTTTCTTGGTCAGGAACAGGAAGTGTTCAAAAGCTTTTAGCAGCCGTATTTTAATGGATATAATTTATATGACCGAAAATAATCTACGGAATAGACCGTATCTAAATCGACAGATGTTCCTCCGGATGTCTCATTGACCTTTAATTATTACCGGGGCGCTGTGGCCCTCAGAAGGCTTCACTCACCTGCTTCCGTCATCGCTGCCGTCCTTGTGTTAGTCGTCTTCAGTTCACAGCTGCTGTCTCTCCGTCTCTTATTTAGCGCTCGAGTGACGTCTCACCTGTTGCCTGCAAACCTCCCCGACAGCCTGCACTCTTCGTTGTCTTTCTYTCTCTCAACCGCTTTGTAGTTTTTTTGTCGACTAAATTCCCTGTTACTCCCAAACGAACATTTGCTGCCAAGTTTTTAACCAATCGTTCTTCTACAGAAAAATTCACAACTGCAAGGCCAAATTTGAGCACTATTAAAACTCTCAATTTAGCAGGTCGAAAGAACAATTGTCACATCGCACCCAAAAAGTCCTTCTGATTTTTGAACTAAATAAGGCCGAACAGTATATGTGCCGTTCCGAATTGTTTTTGTAGGAGACCGCGCAACCTCCATTTGCTTCTTCTTTAAACGTTTAGTTAGTTTTTTCTACAGATTTACAAATCCTCTTTTTCGTTAGATAAAATGACATTTCTCTGACAGAATCTCTTTGACGAGTGTTGTAAGCTGAGATGGAAAATAATGCCCGAAAACCTTGCCAGAACGAGAAAGTCGATGCCGATTGAATCGAATCCTTTTATAGCTTCGTTTCTTTTTGAATCACCTTCTTCGTAGTAAACGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTGTCTCTCCGTCTCTTATT</pcr_primer_p1>
		<pcr_primer_p2>GACCTGCTAAATTGAGAGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTGTCTCTCCGTCTCTTATTTAGCGCTCGAGTGACGTCTCACCTGTTGCCTGCAAACCTCCCCGACAGCCTGCACTCTTCGTTGTCTTTCTCTCTCTCAACCGCTTTGTAGTTTTTTTGTCGACTAAATTCCCTGTTACTCCCAAACGAACATTTGCTGCCAAGTTTTTAACCAATCGTTCTTCTACAGAAAAATTCACAACTGCAAGGCCAAATTTGAGCACTATTAAAACTCTCAATTTAGCAGGTC</canonical_amplicon>
		<polymorphic_amplicon>GCTGTCTCTCCGTCTCTTATTTAGCGCTCGAGTGACGTCTCACCTGTTGCCTGCAAACCTCCCCGACAGCCTGCACTCTTCGTTGTCTTTCTYTCTCTCAACCGCTTTGTAGTTTTTTTGTCGACTAAATTCCCTGTTACTCCCAAACGAACATTTGCTGCCAAGTTTTTAACCAATCGTTCTTCTACAGAAAAATTCACAACTGCAAGGCCAAATTTGAGCACTATTAAAACTCTCAATTTAGCAGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22793</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>114409</contig_pos>
        <strand>+</strand>
        <context>CTCTCAACCG[C/T]TTTGTAGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACCTCCCCGACAGCCTGCACTCTTCGTTGTCTTTCTCTCTCTCAACCG</left_flank>
        <right_flank>TTTGTAGTTTTTTTGTCGACTAAATTCCCTGTTACTCCCAAACGAACATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCCGTCCTCCTGCGTCTCGAAGAGTAGTTCATCACCGCATTGATTTTTTGTCTCCTTCCTATCCAGTTAGCTGATCAATACCACGTTTTATTGCAAACGCAAGATCTTCATGCGGTTTCTATGAAAGCGAAGGGAAACTTGAGAAGCGCATGAAAAATTTTCTTGGTCAGGAACAGGAAGTGTTCAAAAGCTTTTAGCAGCCGTATTTTAATGGATATAATTTATATGACCGAAAATAATCTACGGAATAGACCGTATCTAAATCGACAGATGTTCCTCCGGATGTCTCATTGACCTTTAATTATTACCGGGGCGCTGTGGCCCTCAGAAGGCTTCACTCACCTGCTTCCGTCATCGCTGCCGTCCTTGTGTTAGTCGTCTTCAGTTCACAGCTGCTGTCTCTCCGTCTCTTATTTAGCGCTCGAGTGACGTCTCACCTGTTGCCTGCAAACCTCCCCGACAGCCTGCACTCTTCGTTGTCTTTCTCTCTCTCAACCGCTTTGTAGTTTTTTTGTCGACTAAATTCCCTGTTACTCCCAAACGAACATTTGCTGCCAAGTTTTTAACCAATCGTTCTTCTACAGAAAAATTCACAACTGCAAGGCCAAATTTGAGCACTATTAAAACTCTCAATTTAGCAGGTCGAAAGAACAATTGTCACATCGCACCCAAAAAGTCCTTCTGATTTTTGAACTAAATAAGGCCGAACAGTATATGTGCCGTTCCGAATTGTTTTTGTAGGAGACCGCGCAACCTCCATTTGCTTCTTCTTTAAACGTTTAGTTAGTTTTTTCTACAGATTTACAAATCCTCTTTTTCGTTAGATAAAATGACATTTCTCTGACAGAATCTCTTTGACGAGTGTTGTAAGCTGAGATGGAAAATAATGCCCGAAAACCTTGCCAGAACGAGAAAGTCGATGCCGATTGAATCGAATCCTTTTATAGCTTCGTTTCTTTTTGAATCACCTTCTTCGTAGTAAACGAAAAATATATGCAT</canonical>
            <polymorphic>ACCCGTCCTCCTGCGTCTCGAAGAGTAGTTCATCACCGCATTGATTTTTTGTCTCCTTCCTATCCAGTTAGCTGATCAATACCACGTTTTATTGCAAACGCAAGATCTTCATGCGGTTTCTATGAAAGCGAAGGGAAACTTGAGAAGCGCATGAAAAATTTTCTTGGTCAGGAACAGGAAGTGTTCAAAAGCTTTTAGCAGCCGTATTTTAATGGATATAATTTATATGACCGAAAATAATCTACGGAATAGACCGTATCTAAATCGACAGATGTTCCTCCGGATGTCTCATTGACCTTTAATTATTACCGGGGCGCTGTGGCCCTCAGAAGGCTTCACTCACCTGCTTCCGTCATCGCTGCCGTCCTTGTGTTAGTCGTCTTCAGTTCACAGCTGCTGTCTCTCCGTCTCTTATTTAGCGCTCGAGTGACGTCTCACCTGTTGCCTGCAAACCTCCCCGACAGCCTGCACTCTTCGTTGTCTTTCTCTCTCTCAACCGYTTTGTAGTTTTTTTGTCGACTAAATTCCCTGTTACTCCCAAACGAACATTTGCTGCCAAGTTTTTAACCAATCGTTCTTCTACAGAAAAATTCACAACTGCAAGGCCAAATTTGAGCACTATTAAAACTCTCAATTTAGCAGGTCGAAAGAACAATTGTCACATCGCACCCAAAAAGTCCTTCTGATTTTTGAACTAAATAAGGCCGAACAGTATATGTGCCGTTCCGAATTGTTTTTGTAGGAGACCGCGCAACCTCCATTTGCTTCTTCTTTAAACGTTTAGTTAGTTTTTTCTACAGATTTACAAATCCTCTTTTTCGTTAGATAAAATGACATTTCTCTGACAGAATCTCTTTGACGAGTGTTGTAAGCTGAGATGGAAAATAATGCCCGAAAACCTTGCCAGAACGAGAAAGTCGATGCCGATTGAATCGAATCCTTTTATAGCTTCGTTTCTTTTTGAATCACCTTCTTCGTAGTAAACGAAAAATATATGCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>461 253 250 36</canonical_bands>
                <polymorphic_bands>711 253 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTGTCTCTCCGTCTCTTATT</pcr_primer_p1>
		<pcr_primer_p2>GACCTGCTAAATTGAGAGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTGTCTCTCCGTCTCTTATTTAGCGCTCGAGTGACGTCTCACCTGTTGCCTGCAAACCTCCCCGACAGCCTGCACTCTTCGTTGTCTTTCTCTCTCTCAACCGCTTTGTAGTTTTTTTGTCGACTAAATTCCCTGTTACTCCCAAACGAACATTTGCTGCCAAGTTTTTAACCAATCGTTCTTCTACAGAAAAATTCACAACTGCAAGGCCAAATTTGAGCACTATTAAAACTCTCAATTTAGCAGGTC</canonical_amplicon>
		<polymorphic_amplicon>GCTGTCTCTCCGTCTCTTATTTAGCGCTCGAGTGACGTCTCACCTGTTGCCTGCAAACCTCCCCGACAGCCTGCACTCTTCGTTGTCTTTCTCTCTCTCAACCGYTTTGTAGTTTTTTTGTCGACTAAATTCCCTGTTACTCCCAAACGAACATTTGCTGCCAAGTTTTTAACCAATCGTTCTTCTACAGAAAAATTCACAACTGCAAGGCCAAATTTGAGCACTATTAAAACTCTCAATTTAGCAGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22794</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>116054</contig_pos>
        <strand>+</strand>
        <context>AAGGTAGGGT[A/C]GGAACATCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCAGCTGAGAGCTCATTAGATGATGAAGAAGTGACGAAACAAGGTAGGGT</left_flank>
        <right_flank>GGAACATCATTATTTGAAAGAAAAGCTTTAAAAATCATCTATTTTTCAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCAGTAACAATTGTCAAATATTTGACAGCTTGTCCTCATTTTCTTCCTGGAAAACAAGCCAATTAGCCTGTTCTGTCTACTCTAAACATCTACGCAACCTACTTTTACGATATGTTATGACAACGCCAGACTCGGCAATAACACGGAAAACGATATTCTAAATTTTTGTGGCAAAAGTGCGTTTTACGTTTTGAGACAGAGTTTTTATGGGTCTCCGTATTCTTTTTATCTCTGCAGTCTCTCCCTAGCGCGTACTGGTTTCGTAATCTGTCTCGATTCTCTCTCGCATGCCCAGTGTTTCCTCGAATGATTGAGTTCACTTTCATCATCTCTAGCATTCGTTTCCCGAAACGCAAGTATTATTATCTTTCTTCAGGGCAAAACATGGACAAGGTGGAGCAATTGAACCTGAATCTACAGAATATTCTTGATGACGTCGACATAGATTCAGCTGAGAGCTCATTAGATGATGAAGAAGTGACGAAACAAGGTAGGGTAGGAACATCATTATTTGAAAGAAAAGCTTTAAAAATCATCTATTTTTCAGAAGAATCTATTGAAAACAGAAATACAGAAGAGCCAGATTATAGTGAATCCGATTACGAAGACGACGAAGACATTGTTGATTTCGCGGAGGCTACAGGGGGTGAGCCTCGTTTTGGAGTTGTGCAAAAGCGAATGTTGTTCTTCAGATTTCACAAAAAAGCTCAACGCAGCTCGTTCAAATGCCATTGGCCCGAATGCAGCTCGTAATAGACTCACAGGTGAGCTTATACTGAATATATTTCTGAATTTGTACACAATATTGTTTCTAGTTGATGTGGAAAGACATGCGGATACAAGTGAAGATAGGAAACGCAAGCGAGTGAAGGATCGAGCAGATCGTGCAACTGTAGAACAAGTTCTGGATCCGAGAACTCGTTTGGTTCTTTTCCGTTTACTTCAACGGGGAACTCTGCTCAACATTGATGGTTGTATTTCAACTGGAAAAGAAGCTA</canonical>
            <polymorphic>CTCCAGTAACAATTGTCAAATATTTGACAGCTTGTCCTCATTTTCTTCCTGGAAAACAAGCCAATTAGCCTGTTCTGTCTACTCTAAACATCTACGCAACCTACTTTTACGATATGTTATGACAACGCCAGACTCGGCAATAACACGGAAAACGATATTCTAAATTTTTGTGGCAAAAGTGCGTTTTACGTTTTGAGACAGAGTTTTTATGGGTCTCCGTATTCTTTTTATCTCTGCAGTCTCTCCCTAGCGCGTACTGGTTTCGTAATCTGTCTCGATTCTCTCTCGCATGCCCAGTGTTTCCTCGAATGATTGAGTTCACTTTCATCATCTCTAGCATTCGTTTCCCGAAACGCAAGTATTATTATCTTTCTTCAGGGCAAAACATGGACAAGGTGGAGCAATTGAACCTGAATCTACAGAATATTCTTGATGACGTCGACATAGATTCAGCTGAGAGCTCATTAGATGATGAAGAAGTGACGAAACAAGGTAGGGTMGGAACATCATTATTTGAAAGAAAAGCTTTAAAAATCATCTATTTTTCAGAAGAATCTATTGAAAACAGAAATACAGAAGAGCCAGATTATAGTGAATCCGATTACGAAGACGACGAAGACATTGTTGATTTCGCGGAGGCTACAGGGGGTGAGCCTCGTTTTGGAGTTGTGCAAAAGCGAATGTTGTTCTTCAGATTTCACAAAAAAGCTCAACGCAGCTCGTTCAAATGCCATTGGCCCGAATGCAGCTCGTAATAGACTCACAGGTGAGCTTATACTGAATATATTTCTGAATTTGTACACAATATTGTTTCTAGTTGATGTGGAAAGACATGCGGATACAAGTGAAGATAGGAAACGCAAGCGAGTGAAGGATCGAGCAGATCGTGCAACTGTAGAACAAGTTCTGGATCCGAGAACTCGTTTGGTTCTTTTCCGTTTACTTCAACGGGGAACTCTGCTCAACATTGATGGTTGTATTTCAACTGGAAAAGAAGCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCAAGTATTATTATCTTTCTTCA</pcr_primer_p1>
		<pcr_primer_p2>GGATTCACTATAATCTGGCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CGCAAGTATTATTATCTTTCTTCAGGGCAAAACATGGACAAGGTGGAGCAATTGAACCTGAATCTACAGAATATTCTTGATGACGTCGACATAGATTCAGCTGAGAGCTCATTAGATGATGAAGAAGTGACGAAACAAGGTAGGGTAGGAACATCATTATTTGAAAGAAAAGCTTTAAAAATCATCTATTTTTCAGAAGAATCTATTGAAAACAGAAATACAGAAGAGCCAGATTATAGTGAATCC</canonical_amplicon>
		<polymorphic_amplicon>CGCAAGTATTATTATCTTTCTTCAGGGCAAAACATGGACAAGGTGGAGCAATTGAACCTGAATCTACAGAATATTCTTGATGACGTCGACATAGATTCAGCTGAGAGCTCATTAGATGATGAAGAAGTGACGAAACAAGGTAGGGTMGGAACATCATTATTTGAAAGAAAAGCTTTAAAAATCATCTATTTTTCAGAAGAATCTATTGAAAACAGAAATACAGAAGAGCCAGATTATAGTGAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22795</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>118486</contig_pos>
        <strand>+</strand>
        <context>TGACGAGCGA[C/T]AATCGACCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGTTGACTATCAGGCAATGATTATTCGTTCACTATCAGATGACGAGCGA</left_flank>
        <right_flank>AATCGACCTGGGTCAGTATCAAATTATCTTGAAAAAACATTCGAGTGCTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGTTTTTTGATCAACGTATGATTGATATTCGGTTCGTTTCCTCTCTTCTGTTCCTTTTCAACATATTAAACAGTGCGCACTTTTGCCACGTTCTCAACATTCAGAATAATTCTACAAATATGAAAAGGGAATAGAAGTCATACCAACAAGGGTGCGGTCTGAGCTATTTTCCCCTGGGAACGCCCATTTTTCATACTATACCCCCACTTCTTCCCCTTTTAACATATCCTGCCAGATATTCTTCTTTTTTTTGTAAGTCTCGATATTCTTGAAGACGCGGTTGGATGACTAAGTAGAATCTTCTTTATATTCATAGGTGATCATTTTCAGGTACTGCTCGGCTTCAGCTTATCAACTTTTTCGTTCATTTTCTATTCATTTTTTTCTTACTCTTCGGTTCCTTCTTGTTCCACTCTTCTCTCACCAGACCCCGCTATTTGCACTAATCCCGTTGACTATCAGGCAATGATTATTCGTTCACTATCAGATGACGAGCGACAATCGACCTGGGTCAGTATCAAATTATCTTGAAAAAACATTCGAGTGCTATTCTCATTTCTTCTCAATTGTCAATTTCCTGATAGTTTTAGAAAGAAGAGGTGGTTAATTTGATTCGACTGTACCAGTTTGTTTCGTTCTCCCCTCCAATCACTCTGATTTGTATTTGATTGTTGTCTCTGGCGTTCCTGTTGTTTCGTTGTGTTTTTTGTTACTTTCGATTGTTGTTCTTATAATTATAAATCGTTCTCCATAAATCATATTTTGTTGAAAATTATCTCGTCACTTCTTCCGGTTGTATTCCCGGCTCTGTTACCCTTTCTTTTCTACTCTTTTTCTTTTTTTTCTCAAATTCTTTTTTAAACAGGCTTAGCTCCCGAATTGTGTTAGACTAGTAACGACTCGAAATGGATTCAGAAGAGGTAAATCTAGGTTTTGGTAATAATGAAGTCAAGTGTTATTTCCAGGTTCGTAAAAGAAAGGAGTATGCCGAAAGAAAGG</canonical>
            <polymorphic>GCGTTTTTTGATCAACGTATGATTGATATTCGGTTCGTTTCCTCTCTTCTGTTCCTTTTCAACATATTAAACAGTGCGCACTTTTGCCACGTTCTCAACATTCAGAATAATTCTACAAATATGAAAAGGGAATAGAAGTCATACCAACAAGGGTGCGGTCTGAGCTATTTTCCCCTGGGAACGCCCATTTTTCATACTATACCCCCACTTCTTCCCCTTTTAACATATCCTGCCAGATATTCTTCTTTTTTTTGTAAGTCTCGATATTCTTGAAGACGCGGTTGGATGACTAAGTAGAATCTTCTTTATATTCATAGGTGATCATTTTCAGGTACTGCTCGGCTTCAGCTTATCAACTTTTTCGTTCATTTTCTATTCATTTTTTTCTTACTCTTCGGTTCCTTCTTGTTCCACTCTTCTCTCACCAGACCCCGCTATTTGCACTAATCCCGTTGACTATCAGGCAATGATTATTCGTTCACTATCAGATGACGAGCGAYAATCGACCTGGGTCAGTATCAAATTATCTTGAAAAAACATTCGAGTGCTATTCTCATTTCTTCTCAATTGTCAATTTCCTGATAGTTTTAGAAAGAAGAGGTGGTTAATTTGATTCGACTGTACCAGTTTGTTTCGTTCTCCCCTCCAATCACTCTGATTTGTATTTGATTGTTGTCTCTGGCGTTCCTGTTGTTTCGTTGTGTTTTTTGTTACTTTCGATTGTTGTTCTTATAATTATAAATCGTTCTCCATAAATCATATTTTGTTGAAAATTATCTCGTCACTTCTTCCGGTTGTATTCCCGGCTCTGTTACCCTTTCTTTTCTACTCTTTTTCTTTTTTTTCTCAAATTCTTTTTTAAACAGGCTTAGCTCCCGAATTGTGTTAGACTAGTAACGACTCGAAATGGATTCAGAAGAGGTAAATCTAGGTTTTGGTAATAATGAAGTCAAGTGTTATTTCCAGGTTCGTAAAAGAAAGGAGTATGCCGAAAGAAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTTCGTTCATTTTCTATTCA</pcr_primer_p1>
		<pcr_primer_p2>AACCACCTCTTCTTTCTAAAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTTTCGTTCATTTTCTATTCATTTTTTTCTTACTCTTCGGTTCCTTCTTGTTCCACTCTTCTCTCACCAGACCCCGCTATTTGCACTAATCCCGTTGACTATCAGGCAATGATTATTCGTTCACTATCAGATGACGAGCGACAATCGACCTGGGTCAGTATCAAATTATCTTGAAAAAACATTCGAGTGCTATTCTCATTTCTTCTCAATTGTCAATTTCCTGATAGTTTTAGAAAGAAGAGGTGGTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTTCGTTCATTTTCTATTCATTTTTTTCTTACTCTTCGGTTCCTTCTTGTTCCACTCTTCTCTCACCAGACCCCGCTATTTGCACTAATCCCGTTGACTATCAGGCAATGATTATTCGTTCACTATCAGATGACGAGCGAYAATCGACCTGGGTCAGTATCAAATTATCTTGAAAAAACATTCGAGTGCTATTCTCATTTCTTCTCAATTGTCAATTTCCTGATAGTTTTAGAAAGAAGAGGTGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22796</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>118513</contig_pos>
        <strand>+</strand>
        <context>TATCAAATTA[C/T]CTTGAAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTCACTATCAGATGACGAGCGACAATCGACCTGGGTCAGTATCAAATTA</left_flank>
        <right_flank>CTTGAAAAAACATTCGAGTGCTATTCTCATTTCTTCTCAATTGTCAATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCGGTTCGTTTCCTCTCTTCTGTTCCTTTTCAACATATTAAACAGTGCGCACTTTTGCCACGTTCTCAACATTCAGAATAATTCTACAAATATGAAAAGGGAATAGAAGTCATACCAACAAGGGTGCGGTCTGAGCTATTTTCCCCTGGGAACGCCCATTTTTCATACTATACCCCCACTTCTTCCCCTTTTAACATATCCTGCCAGATATTCTTCTTTTTTTTGTAAGTCTCGATATTCTTGAAGACGCGGTTGGATGACTAAGTAGAATCTTCTTTATATTCATAGGTGATCATTTTCAGGTACTGCTCGGCTTCAGCTTATCAACTTTTTCGTTCATTTTCTATTCATTTTTTTCTTACTCTTCGGTTCCTTCTTGTTCCACTCTTCTCTCACCAGACCCCGCTATTTGCACTAATCCCGTTGACTATCAGGCAATGATTATTCGTTCACTATCAGATGACGAGCGACAATCGACCTGGGTCAGTATCAAATTATCTTGAAAAAACATTCGAGTGCTATTCTCATTTCTTCTCAATTGTCAATTTCCTGATAGTTTTAGAAAGAAGAGGTGGTTAATTTGATTCGACTGTACCAGTTTGTTTCGTTCTCCCCTCCAATCACTCTGATTTGTATTTGATTGTTGTCTCTGGCGTTCCTGTTGTTTCGTTGTGTTTTTTGTTACTTTCGATTGTTGTTCTTATAATTATAAATCGTTCTCCATAAATCATATTTTGTTGAAAATTATCTCGTCACTTCTTCCGGTTGTATTCCCGGCTCTGTTACCCTTTCTTTTCTACTCTTTTTCTTTTTTTTCTCAAATTCTTTTTTAAACAGGCTTAGCTCCCGAATTGTGTTAGACTAGTAACGACTCGAAATGGATTCAGAAGAGGTAAATCTAGGTTTTGGTAATAATGAAGTCAAGTGTTATTTCCAGGTTCGTAAAAGAAAGGAGTATGCCGAAAGAAAGGTGAAAGAGAGACATGCTGCTCTGAGGA</canonical>
            <polymorphic>ATTCGGTTCGTTTCCTCTCTTCTGTTCCTTTTCAACATATTAAACAGTGCGCACTTTTGCCACGTTCTCAACATTCAGAATAATTCTACAAATATGAAAAGGGAATAGAAGTCATACCAACAAGGGTGCGGTCTGAGCTATTTTCCCCTGGGAACGCCCATTTTTCATACTATACCCCCACTTCTTCCCCTTTTAACATATCCTGCCAGATATTCTTCTTTTTTTTGTAAGTCTCGATATTCTTGAAGACGCGGTTGGATGACTAAGTAGAATCTTCTTTATATTCATAGGTGATCATTTTCAGGTACTGCTCGGCTTCAGCTTATCAACTTTTTCGTTCATTTTCTATTCATTTTTTTCTTACTCTTCGGTTCCTTCTTGTTCCACTCTTCTCTCACCAGACCCCGCTATTTGCACTAATCCCGTTGACTATCAGGCAATGATTATTCGTTCACTATCAGATGACGAGCGACAATCGACCTGGGTCAGTATCAAATTAYCTTGAAAAAACATTCGAGTGCTATTCTCATTTCTTCTCAATTGTCAATTTCCTGATAGTTTTAGAAAGAAGAGGTGGTTAATTTGATTCGACTGTACCAGTTTGTTTCGTTCTCCCCTCCAATCACTCTGATTTGTATTTGATTGTTGTCTCTGGCGTTCCTGTTGTTTCGTTGTGTTTTTTGTTACTTTCGATTGTTGTTCTTATAATTATAAATCGTTCTCCATAAATCATATTTTGTTGAAAATTATCTCGTCACTTCTTCCGGTTGTATTCCCGGCTCTGTTACCCTTTCTTTTCTACTCTTTTTCTTTTTTTTCTCAAATTCTTTTTTAAACAGGCTTAGCTCCCGAATTGTGTTAGACTAGTAACGACTCGAAATGGATTCAGAAGAGGTAAATCTAGGTTTTGGTAATAATGAAGTCAAGTGTTATTTCCAGGTTCGTAAAAGAAAGGAGTATGCCGAAAGAAAGGTGAAAGAGAGACATGCTGCTCTGAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>297 259 233 152 50 9</canonical_bands>
                <polymorphic_bands>309 297 233 152 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTTTCGTTCATTTTCTATTCA</pcr_primer_p1>
		<pcr_primer_p2>AACCACCTCTTCTTTCTAAAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTTTCGTTCATTTTCTATTCATTTTTTTCTTACTCTTCGGTTCCTTCTTGTTCCACTCTTCTCTCACCAGACCCCGCTATTTGCACTAATCCCGTTGACTATCAGGCAATGATTATTCGTTCACTATCAGATGACGAGCGACAATCGACCTGGGTCAGTATCAAATTATCTTGAAAAAACATTCGAGTGCTATTCTCATTTCTTCTCAATTGTCAATTTCCTGATAGTTTTAGAAAGAAGAGGTGGTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTTCGTTCATTTTCTATTCATTTTTTTCTTACTCTTCGGTTCCTTCTTGTTCCACTCTTCTCTCACCAGACCCCGCTATTTGCACTAATCCCGTTGACTATCAGGCAATGATTATTCGTTCACTATCAGATGACGAGCGACAATCGACCTGGGTCAGTATCAAATTAYCTTGAAAAAACATTCGAGTGCTATTCTCATTTCTTCTCAATTGTCAATTTCCTGATAGTTTTAGAAAGAAGAGGTGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22797</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>175039</contig_pos>
        <strand>+</strand>
        <context>ATGGGCCGGA[C/G]ATTAAATTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAAAAAACATTTTTACTCACATTTCCTATACATTTTCCAAATGGGCCGGA</left_flank>
        <right_flank>ATTAAATTGATACCGGTACATGTCTTTGCGATGAGTGCTGTAGCGTTTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCAACTTTTTGTTGCCCCAAAACTAAAAAAATGGTATAAAGAAAGCTCTCCGACCTCTGAAAATGGAAAGAAAATGTGACTTTGAAAGCCGAGATCAATTCTGGAAACGAGTTATTATCATAATATTTATTGCATCTCAACATATTTTTAAAAAATTATGCTGAGCATTCCATCATTCCGAGAATGTAATCCAAATGAGTATTCATCGAATCGACACTTTCTTGGCCACATTTATCCGATACTAGTTTTGTGGTGCATTTGAGCTCATCTTGATACATTTGACAGTTTCCAGGCCGCCCTTTCTACAAAAATGTTTTTTTAATGTAATAAAAATCAGGGGAATAAATAGTCAACCTCTGTTTGTAAAAACCGACCGCATGGATACTTTTTGAGGGATGGTGGAACGGTGCGGAGCTGGAAATTGAGAATTATCGTTTTCTTTTTGATGAAAAAACATTTTTACTCACATTTCCTATACATTTTCCAAATGGGCCGGAGATTAAATTGATACCGGTACATGTCTTTGCGATGAGTGCTGTAGCGTTTTTGAGCACATCACACTTGATTTCTTTCATGCATGACTGAAAAAAAGACAAATTCAATGAGCAGGTCTCAAAGGAAAGTGCATTCTGAAATTCGAAAAAATCCATTATTTAATTGTTTCAACAAACTATTCTTTGAATTTTTCTAGTTTCAAAAGTTCTATCAGAAGAAAATTTAAAAAAAAGCCGATGTTTGATGTCTGGTTCTGTCCACTCGTGAAGCACAATTGACTCTGTTCAAAAACTAGAAACTTTAAAAACTTACAAGCGCTTCTTCGCACATCACAGAGAATCCTTTGAGCTCATCTGGAGGTGGCATGTTCGCGTATTCAGCCATTTTACTTGCTAACTTTCCGAGGAATGGCTTACATTCGATCGATTTTACTGCATCCGAATGATCACAAGGAACAGAGCCATCAACAAGAATCACGAAGAAGAATAAGAAAAGAACCTGCA</canonical>
            <polymorphic>ATTCAACTTTTTGTTGCCCCAAAACTAAAAAAATGGTATAAAGAAAGCTCTCCGACCTCTGAAAATGGAAAGAAAATGTGACTTTGAAAGCCGAGATCAATTCTGGAAACGAGTTATTATCATAATATTTATTGCATCTCAACATATTTTTAAAAAATTATGCTGAGCATTCCATCATTCCGAGAATGTAATCCAAATGAGTATTCATCGAATCGACACTTTCTTGGCCACATTTATCCGATACTAGTTTTGTGGTGCATTTGAGCTCATCTTGATACATTTGACAGTTTCCAGGCCGCCCTTTCTACAAAAATGTTTTTTTAATGTAATAAAAATCAGGGGAATAAATAGTCAACCTCTGTTTGTAAAAACCGACCGCATGGATACTTTTTGAGGGATGGTGGAACGGTGCGGAGCTGGAAATTGAGAATTATCGTTTTCTTTTTGATGAAAAAACATTTTTACTCACATTTCCTATACATTTTCCAAATGGGCCGGASATTAAATTGATACCGGTACATGTCTTTGCGATGAGTGCTGTAGCGTTTTTGAGCACATCACACTTGATTTCTTTCATGCATGACTGAAAAAAAGACAAATTCAATGAGCAGGTCTCAAAGGAAAGTGCATTCTGAAATTCGAAAAAATCCATTATTTAATTGTTTCAACAAACTATTCTTTGAATTTTTCTAGTTTCAAAAGTTCTATCAGAAGAAAATTTAAAAAAAAGCCGATGTTTGATGTCTGGTTCTGTCCACTCGTGAAGCACAATTGACTCTGTTCAAAAACTAGAAACTTTAAAAACTTACAAGCGCTTCTTCGCACATCACAGAGAATCCTTTGAGCTCATCTGGAGGTGGCATGTTCGCGTATTCAGCCATTTTACTTGCTAACTTTCCGAGGAATGGCTTACATTCGATCGATTTTACTGCATCCGAATGATCACAAGGAACAGAGCCATCAACAAGAATCACGAAGAAGAATAAGAAAAGAACCTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAATAAAAATCAGGGGAATAA</pcr_primer_p1>
		<pcr_primer_p2>GAAAGAAATCAAGTGTGATGTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGTAATAAAAATCAGGGGAATAAATAGTCAACCTCTGTTTGTAAAAACCGACCGCATGGATACTTTTTGAGGGATGGTGGAACGGTGCGGAGCTGGAAATTGAGAATTATCGTTTTCTTTTTGATGAAAAAACATTTTTACTCACATTTCCTATACATTTTCCAAATGGGCCGGAGATTAAATTGATACCGGTACATGTCTTTGCGATGAGTGCTGTAGCGTTTTTGAGCACATCACACTTGATTTCTTTC</canonical_amplicon>
		<polymorphic_amplicon>TGTAATAAAAATCAGGGGAATAAATAGTCAACCTCTGTTTGTAAAAACCGACCGCATGGATACTTTTTGAGGGATGGTGGAACGGTGCGGAGCTGGAAATTGAGAATTATCGTTTTCTTTTTGATGAAAAAACATTTTTACTCACATTTCCTATACATTTTCCAAATGGGCCGGASATTAAATTGATACCGGTACATGTCTTTGCGATGAGTGCTGTAGCGTTTTTGAGCACATCACACTTGATTTCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22798</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>175120</contig_pos>
        <strand>+</strand>
        <context>CTTTCATGCA[C/T]GACTGAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGAGTGCTGTAGCGTTTTTGAGCACATCACACTTGATTTCTTTCATGCA</left_flank>
        <right_flank>GACTGAAAAAAAGACAAATTCAATGAGCAGGTCTCAAAGGAAAGTGCATT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTGAAAGCCGAGATCAATTCTGGAAACGAGTTATTATCATAATATTTATTGCATCTCAACATATTTTTAAAAAATTATGCTGAGCATTCCATCATTCCGAGAATGTAATCCAAATGAGTATTCATCGAATCGACACTTTCTTGGCCACATTTATCCGATACTAGTTTTGTGGTGCATTTGAGCTCATCTTGATACATTTGACAGTTTCCAGGCCGCCCTTTCTACAAAAATGTTTTTTTAATGTAATAAAAATCAGGGGAATAAATAGTCAACCTCTGTTTGTAAAAACCGACCGCATGGATACTTTTTGAGGGATGGTGGAACGGTGCGGAGCTGGAAATTGAGAATTATCGTTTTCTTTTTGATGAAAAAACATTTTTACTCACATTTCCTATACATTTTCCAAATGGGCCGGAGATTAAATTGATACCGGTACATGTCTTTGCGATGAGTGCTGTAGCGTTTTTGAGCACATCACACTTGATTTCTTTCATGCATGACTGAAAAAAAGACAAATTCAATGAGCAGGTCTCAAAGGAAAGTGCATTCTGAAATTCGAAAAAATCCATTATTTAATTGTTTCAACAAACTATTCTTTGAATTTTTCTAGTTTCAAAAGTTCTATCAGAAGAAAATTTAAAAAAAAGCCGATGTTTGATGTCTGGTTCTGTCCACTCGTGAAGCACAATTGACTCTGTTCAAAAACTAGAAACTTTAAAAACTTACAAGCGCTTCTTCGCACATCACAGAGAATCCTTTGAGCTCATCTGGAGGTGGCATGTTCGCGTATTCAGCCATTTTACTTGCTAACTTTCCGAGGAATGGCTTACATTCGATCGATTTTACTGCATCCGAATGATCACAAGGAACAGAGCCATCAACAAGAATCACGAAGAAGAATAAGAAAAGAACCTGCATGATGAATGAAACGAGGAAGAAGAACTTGGTTTTTAGCAAACGGATGACCTTGGACGATGTACACCGGTAAACATTTTCGC</canonical>
            <polymorphic>CTTTGAAAGCCGAGATCAATTCTGGAAACGAGTTATTATCATAATATTTATTGCATCTCAACATATTTTTAAAAAATTATGCTGAGCATTCCATCATTCCGAGAATGTAATCCAAATGAGTATTCATCGAATCGACACTTTCTTGGCCACATTTATCCGATACTAGTTTTGTGGTGCATTTGAGCTCATCTTGATACATTTGACAGTTTCCAGGCCGCCCTTTCTACAAAAATGTTTTTTTAATGTAATAAAAATCAGGGGAATAAATAGTCAACCTCTGTTTGTAAAAACCGACCGCATGGATACTTTTTGAGGGATGGTGGAACGGTGCGGAGCTGGAAATTGAGAATTATCGTTTTCTTTTTGATGAAAAAACATTTTTACTCACATTTCCTATACATTTTCCAAATGGGCCGGAGATTAAATTGATACCGGTACATGTCTTTGCGATGAGTGCTGTAGCGTTTTTGAGCACATCACACTTGATTTCTTTCATGCAYGACTGAAAAAAAGACAAATTCAATGAGCAGGTCTCAAAGGAAAGTGCATTCTGAAATTCGAAAAAATCCATTATTTAATTGTTTCAACAAACTATTCTTTGAATTTTTCTAGTTTCAAAAGTTCTATCAGAAGAAAATTTAAAAAAAAGCCGATGTTTGATGTCTGGTTCTGTCCACTCGTGAAGCACAATTGACTCTGTTCAAAAACTAGAAACTTTAAAAACTTACAAGCGCTTCTTCGCACATCACAGAGAATCCTTTGAGCTCATCTGGAGGTGGCATGTTCGCGTATTCAGCCATTTTACTTGCTAACTTTCCGAGGAATGGCTTACATTCGATCGATTTTACTGCATCCGAATGATCACAAGGAACAGAGCCATCAACAAGAATCACGAAGAAGAATAAGAAAAGAACCTGCATGATGAATGAAACGAGGAAGAAGAACTTGGTTTTTAGCAAACGGATGACCTTGGACGATGTACACCGGTAAACATTTTCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATGCAT</site>
                <isoschizomers>
                    <enzyme>BfrBI</enzyme>
                    <enzyme>EcoT22I</enzyme>
                    <enzyme>Mph1103I</enzyme>
                    <enzyme>NsiI</enzyme>
                    <enzyme>Ppu10I</enzyme>
                    <enzyme>Zsp2I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>298 282 140 138 82 56 4</canonical_bands>
                <polymorphic_bands>298 286 140 138 82 56</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGATACCGGTACATGTCTT</pcr_primer_p1>
		<pcr_primer_p2>CAGAACCAGACATCAAACATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTGATACCGGTACATGTCTTTGCGATGAGTGCTGTAGCGTTTTTGAGCACATCACACTTGATTTCTTTCATGCATGACTGAAAAAAAGACAAATTCAATGAGCAGGTCTCAAAGGAAAGTGCATTCTGAAATTCGAAAAAATCCATTATTTAATTGTTTCAACAAACTATTCTTTGAATTTTTCTAGTTTCAAAAGTTCTATCAGAAGAAAATTTAAAAAAAAGCCGATGTTTGATGTCTGGTTCTG</canonical_amplicon>
		<polymorphic_amplicon>AATTGATACCGGTACATGTCTTTGCGATGAGTGCTGTAGCGTTTTTGAGCACATCACACTTGATTTCTTTCATGCAYGACTGAAAAAAAGACAAATTCAATGAGCAGGTCTCAAAGGAAAGTGCATTCTGAAATTCGAAAAAATCCATTATTTAATTGTTTCAACAAACTATTCTTTGAATTTTTCTAGTTTCAAAAGTTCTATCAGAAGAAAATTTAAAAAAAAGCCGATGTTTGATGTCTGGTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22799</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>175260</contig_pos>
        <strand>+</strand>
        <context>GAAGAAAATT[A/T]AAAAAAAAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACTATTCTTTGAATTTTTCTAGTTTCAAAAGTTCTATCAGAAGAAAATT</left_flank>
        <right_flank>AAAAAAAAGCCGATGTTTGATGTCTGGTTCTGTCCACTCGTGAAGCACAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTGGCCACATTTATCCGATACTAGTTTTGTGGTGCATTTGAGCTCATCTTGATACATTTGACAGTTTCCAGGCCGCCCTTTCTACAAAAATGTTTTTTTAATGTAATAAAAATCAGGGGAATAAATAGTCAACCTCTGTTTGTAAAAACCGACCGCATGGATACTTTTTGAGGGATGGTGGAACGGTGCGGAGCTGGAAATTGAGAATTATCGTTTTCTTTTTGATGAAAAAACATTTTTACTCACATTTCCTATACATTTTCCAAATGGGCCGGAGATTAAATTGATACCGGTACATGTCTTTGCGATGAGTGCTGTAGCGTTTTTGAGCACATCACACTTGATTTCTTTCATGCATGACTGAAAAAAAGACAAATTCAATGAGCAGGTCTCAAAGGAAAGTGCATTCTGAAATTCGAAAAAATCCATTATTTAATTGTTTCAACAAACTATTCTTTGAATTTTTCTAGTTTCAAAAGTTCTATCAGAAGAAAATTTAAAAAAAAGCCGATGTTTGATGTCTGGTTCTGTCCACTCGTGAAGCACAATTGACTCTGTTCAAAAACTAGAAACTTTAAAAACTTACAAGCGCTTCTTCGCACATCACAGAGAATCCTTTGAGCTCATCTGGAGGTGGCATGTTCGCGTATTCAGCCATTTTACTTGCTAACTTTCCGAGGAATGGCTTACATTCGATCGATTTTACTGCATCCGAATGATCACAAGGAACAGAGCCATCAACAAGAATCACGAAGAAGAATAAGAAAAGAACCTGCATGATGAATGAAACGAGGAAGAAGAACTTGGTTTTTAGCAAACGGATGACCTTGGACGATGTACACCGGTAAACATTTTCGCCGACTTGATGGCGTCAGAGTGTCGGACTAATGATGTTCGGTTTTTGCAGATGGATTTTTAAAAAGAAAATGTAGGTTTTAAAATTTTTATAACAAAAAGTCGGAATAACAGTAACGATATTGAAAAAGAGAAAAACAAGA</canonical>
            <polymorphic>TCTTGGCCACATTTATCCGATACTAGTTTTGTGGTGCATTTGAGCTCATCTTGATACATTTGACAGTTTCCAGGCCGCCCTTTCTACAAAAATGTTTTTTTAATGTAATAAAAATCAGGGGAATAAATAGTCAACCTCTGTTTGTAAAAACCGACCGCATGGATACTTTTTGAGGGATGGTGGAACGGTGCGGAGCTGGAAATTGAGAATTATCGTTTTCTTTTTGATGAAAAAACATTTTTACTCACATTTCCTATACATTTTCCAAATGGGCCGGAGATTAAATTGATACCGGTACATGTCTTTGCGATGAGTGCTGTAGCGTTTTTGAGCACATCACACTTGATTTCTTTCATGCATGACTGAAAAAAAGACAAATTCAATGAGCAGGTCTCAAAGGAAAGTGCATTCTGAAATTCGAAAAAATCCATTATTTAATTGTTTCAACAAACTATTCTTTGAATTTTTCTAGTTTCAAAAGTTCTATCAGAAGAAAATTWAAAAAAAAGCCGATGTTTGATGTCTGGTTCTGTCCACTCGTGAAGCACAATTGACTCTGTTCAAAAACTAGAAACTTTAAAAACTTACAAGCGCTTCTTCGCACATCACAGAGAATCCTTTGAGCTCATCTGGAGGTGGCATGTTCGCGTATTCAGCCATTTTACTTGCTAACTTTCCGAGGAATGGCTTACATTCGATCGATTTTACTGCATCCGAATGATCACAAGGAACAGAGCCATCAACAAGAATCACGAAGAAGAATAAGAAAAGAACCTGCATGATGAATGAAACGAGGAAGAAGAACTTGGTTTTTAGCAAACGGATGACCTTGGACGATGTACACCGGTAAACATTTTCGCCGACTTGATGGCGTCAGAGTGTCGGACTAATGATGTTCGGTTTTTGCAGATGGATTTTTAAAAAGAAAATGTAGGTTTTAAAATTTTTATAACAAAAAGTCGGAATAACAGTAACGATATTGAAAAAGAGAAAAACAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>446 376 59 47 38 34</canonical_bands>
                <polymorphic_bands>480 376 59 47 38</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 341 78 61 20</canonical_bands>
                <polymorphic_bands>578 341 61 20</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>341 181 154 100 78 64 62 20</canonical_bands>
                <polymorphic_bands>341 181 154 142 100 62 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATCACACTTGATTTCTTTCAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTAAAGTTTCTAGTTTTTGAACAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACATCACACTTGATTTCTTTCATGCATGACTGAAAAAAAGACAAATTCAATGAGCAGGTCTCAAAGGAAAGTGCATTCTGAAATTCGAAAAAATCCATTATTTAATTGTTTCAACAAACTATTCTTTGAATTTTTCTAGTTTCAAAAGTTCTATCAGAAGAAAATTTAAAAAAAAGCCGATGTTTGATGTCTGGTTCTGTCCACTCGTGAAGCACAATTGACTCTGTTCAAAAACTAGAAACTTTAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACATCACACTTGATTTCTTTCATGCATGACTGAAAAAAAGACAAATTCAATGAGCAGGTCTCAAAGGAAAGTGCATTCTGAAATTCGAAAAAATCCATTATTTAATTGTTTCAACAAACTATTCTTTGAATTTTTCTAGTTTCAAAAGTTCTATCAGAAGAAAATTWAAAAAAAAGCCGATGTTTGATGTCTGGTTCTGTCCACTCGTGAAGCACAATTGACTCTGTTCAAAAACTAGAAACTTTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22800</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>183425</contig_pos>
        <strand>+</strand>
        <context>ATAGCCCAAT[G/T]GAAACTGCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCTCTCACCCATTTTCATCGAAGTTATCGAAGTTTTCAGAATAGCCCAAT</left_flank>
        <right_flank>GAAACTGCTGCGGCGCTGAGAAATAAGGAGGAATATATCCTGCTTGTTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAACGTTTTCCATAACAGCAGGTCCGAAACCAGCATCGGAGAAATTTTCGATAGCTGCCGGGACAGAATCGCCACTGACTTCTACCGGAATATTTTCGTACTTATCGAAGTTGATGCCACTATTGGTACGATGAAACAAGTTGCTGAAAGAATATATTTTTTTTTTCTATAAGTCGCATTAGAAACTTACTTCTCGGTGTATTCGGCACCAGCTCCTCCCCATCCGTTTGTTTCCCCTCCACTGCAATATCTATCAATGAGAAAACGTAAAAAACTGTCAGCCTACTTATTATTATAGCCGTTTCCACTATCGGAGTAGTTATATCCATTGGACCTGAAAAAGGTACCATTGAAAATGTTGTTATCAAAGCGTGATAGGAGAAACAAAGGAAGAAAGAACAAGCATATGGTTAGGAGGCAACACAAGCACCAACACTACTATACACCTGCTCTCACCCATTTTCATCGAAGTTATCGAAGTTTTCAGAATAGCCCAATTGAAACTGCTGCGGCGCTGAGAAATAAGGAGGAATATATCCTGCTTGTTGTGAAGGCACCATTTGCCCCATCCCCGTTGGAACCATAGACTGTTGAATTGCATACCCGTTTGACGGACTTCCGTTCTGACCGAATCCGCCATTGTAGAAGCCGCCTGCAGCCACATTTCCTGGTTGTTGTTGAGAATACGACGACCAGCTGAAAAAAGATGTAGCGAATCTATCTAATCACTTCTATGTTACCTTTGACCTTGATGTTGTTGGCCGTTGTGACTCGCGTAATATTGTGTATTCATAGTTGATATTTGGATAAGACTATATCAAACGGAAACCCGGAATTCGAAGAAAATCGGCGAGTCTAAACCGATTTTGTACCCAGTTGATGTCGAGATAGCAATAAATGTATCTGCAAACAGAATACTTGTAGATAACTAAAATTTTGTAAACGGTCGAAGCTTAGTGTCATGATAAAGTTAATCGGAATAGTTTCATAAAAAATACG</canonical>
            <polymorphic>GTAACGTTTTCCATAACAGCAGGTCCGAAACCAGCATCGGAGAAATTTTCGATAGCTGCCGGGACAGAATCGCCACTGACTTCTACCGGAATATTTTCGTACTTATCGAAGTTGATGCCACTATTGGTACGATGAAACAAGTTGCTGAAAGAATATATTTTTTTTTTCTATAAGTCGCATTAGAAACTTACTTCTCGGTGTATTCGGCACCAGCTCCTCCCCATCCGTTTGTTTCCCCTCCACTGCAATATCTATCAATGAGAAAACGTAAAAAACTGTCAGCCTACTTATTATTATAGCCGTTTCCACTATCGGAGTAGTTATATCCATTGGACCTGAAAAAGGTACCATTGAAAATGTTGTTATCAAAGCGTGATAGGAGAAACAAAGGAAGAAAGAACAAGCATATGGTTAGGAGGCAACACAAGCACCAACACTACTATACACCTGCTCTCACCCATTTTCATCGAAGTTATCGAAGTTTTCAGAATAGCCCAATKGAAACTGCTGCGGCGCTGAGAAATAAGGAGGAATATATCCTGCTTGTTGTGAAGGCACCATTTGCCCCATCCCCGTTGGAACCATAGACTGTTGAATTGCATACCCGTTTGACGGACTTCCGTTCTGACCGAATCCGCCATTGTAGAAGCCGCCTGCAGCCACATTTCCTGGTTGTTGTTGAGAATACGACGACCAGCTGAAAAAAGATGTAGCGAATCTATCTAATCACTTCTATGTTACCTTTGACCTTGATGTTGTTGGCCGTTGTGACTCGCGTAATATTGTGTATTCATAGTTGATATTTGGATAAGACTATATCAAACGGAAACCCGGAATTCGAAGAAAATCGGCGAGTCTAAACCGATTTTGTACCCAGTTGATGTCGAGATAGCAATAAATGTATCTGCAAACAGAATACTTGTAGATAACTAAAATTTTGTAAACGGTCGAAGCTTAGTGTCATGATAAAGTTAATCGGAATAGTTTCATAAAAAATACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>453 240 99 98 67 43</canonical_bands>
                <polymorphic_bands>551 240 99 67 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTTATCAAAGCGTGATAGG</pcr_primer_p1>
		<pcr_primer_p2>TATGCAATTCAACAGTCTATGG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTGTTATCAAAGCGTGATAGGAGAAACAAAGGAAGAAAGAACAAGCATATGGTTAGGAGGCAACACAAGCACCAACACTACTATACACCTGCTCTCACCCATTTTCATCGAAGTTATCGAAGTTTTCAGAATAGCCCAATTGAAACTGCTGCGGCGCTGAGAAATAAGGAGGAATATATCCTGCTTGTTGTGAAGGCACCATTTGCCCCATCCCCGTTGGAACCATAGACTGTTGAATTGCATA</canonical_amplicon>
		<polymorphic_amplicon>TTGTTATCAAAGCGTGATAGGAGAAACAAAGGAAGAAAGAACAAGCATATGGTTAGGAGGCAACACAAGCACCAACACTACTATACACCTGCTCTCACCCATTTTCATCGAAGTTATCGAAGTTTTCAGAATAGCCCAATKGAAACTGCTGCGGCGCTGAGAAATAAGGAGGAATATATCCTGCTTGTTGTGAAGGCACCATTTGCCCCATCCCCGTTGGAACCATAGACTGTTGAATTGCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22801</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>209073</contig_pos>
        <strand>+</strand>
        <context>AAGATAACGR[A/T]CGTCAGAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGCTTCTTCTGGTTGCTGACGTCGATGAAAAATGCCTAAAAGATAACGG</left_flank>
        <right_flank>CGTCAGAAGAGACACAGACACCTCTTGGAGGACATATTTTGACATTCAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGGAATCGAGATAATAATGCTCAAAGTTGAAAGTTTACGGAAAGTTTCTTGTTGACACGATGAGAAAATTTCATCCTGATTTTCCGAATCATTTCTATTCTTTTTTGGTCATAGACTGTTTCTCTCCGATTTGTCTATGTCTCGGGATCCATTCACTGGTCACAATTTGTCAAACTCGTATAAATTTATGCTGAACTATCGGGAGACACATTTTAGACTTTGTTTTTTTGTTCACAAGTTCCCTGATCCTTCTTGTGATTTTGAATTGACCATCTTCGTTCAATTCTCATCTGTTTTGATTCTCTGTTTTTTCCGGCCTCTCCTACTGCCGATTTCAGAGTGTAAAACTGTTAAAAGTCGCCATTTCGTTCCCTTCTTCTTCGTCATTTTTTTCCGTCTCGCCTCCTACGAAAACCAACCTTTTCTATTACTTTGTCCCTATTTTCAATCGCTTCTTCTGGTTGCTGACGTCGATGAAAAATGCCTAAAAGATAACGGACGTCAGAAGAGACACAGACACCTCTTGGAGGACATATTTTGACATTCAATGAACGAGAAAATACAAAAAAGGAAGAGAGAAGAAATGATGCTTTTCTTTTCAACGGAAGTTGTCCATTAACTGATAACTTAACAGTAGCACCCGTAGTAGCAATAAAGTTGATCATATCACCCAGAAGACCTGAAAAGGGCGGTCAGAAGAAGAAAACGACAGTGGGCCGAAGAAATGTAATACAACCGAATAGTTGTTGGGTCGGGTCATGTTTTCTGTTTATGACATTTTGCAACTTCAACCTTTCTTGTTCCACAATCTTCTTTTTTTTTGTTGATAATCGTCTGCCATTGTTGAATACTTATTCCCGACGAATGGTGGCATTTTGAAGAAAAACAGAAGTTTAGAATGAAATCATTTTAAACAGGGTCTCCCAAAAATGGAGAATTCGTTCTGTTTTTTTTTTTGGAAATTGAATACCGTAAAACCTGTGTAAGTCCGGCCCTTCT</canonical>
            <polymorphic>CAGGAATCGAGATAATAATGCTCAAAGTTGAAAGTTTACGGAAAGTTTCTTGTTGACACGATGAGAAAATTTCATCCTGATTTTCCGAATCATTTCTATTCTTTTTTGGTCATAGACTGTTTCTCTCCGATTTGTCTATGTCTCGGGATCCATTCACTGGTCACAATTTGTCAAACTCGTATAAATTTATGCTGAACTATCGGGAGACACATTTTAGACTTTGTTTTTTTGTTCACAAGTTCCCTGATCCTTCTTGTGATTTTGAATTGACCATCTTCGTTCAATTCTCATCTGTTTTGATTCTCTGTTTTTTCCGGCCTCTCCTACTGCCGATTTCAGAGTGTAAAACTGTTAAAAGTCGCCATTTCGTTCCCTTCTTCTTCGTCATTTTTTTCCGTCTCGCCTCCTACGAAAACCAACCTTTTCTATTACTTTGTCCCTATTTTCAATCGCTTCTTCTGGTTGCTGACGTCGATGAAAAATGCCTAAAAGATAACGGWCGTCAGAAGAGACACAGACACCTCTTGGAGGACATATTTTGACATTCAATGAACGAGAAAATACAAAAAAGGAAGAGAGAAGAAATGATGCTTTTCTTTTCAACGGAAGTTGTCCATTAACTGATAACTTAACAGTAGCACCCGTAGTAGCAATAAAGTTGATCATATCACCCAGAAGACCTGAAAAGGGCGGTCAGAAGAAGAAAACGACAGTGGGCCGAAGAAATGTAATACAACCGAATAGTTGTTGGGTCGGGTCATGTTTTCTGTTTATGACATTTTGCAACTTCAACCTTTCTTGTTCCACAATCTTCTTTTTTTTTGTTGATAATCGTCTGCCATTGTTGAATACTTATTCCCGACGAATGGTGGCATTTTGAAGAAAAACAGAAGTTTAGAATGAAATCATTTTAAACAGGGTCTCCCAAAAATGGAGAATTCGTTCTGTTTTTTTTTTTGGAAATTGAATACCGTAAAACCTGTGTAAGTCCGGCCCTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACGTC</site>
                <isoschizomers>
                    <enzyme>AatII</enzyme>
                    <enzyme>ZraI</enzyme>
                </isoschizomers>
                <canonical_bands>497 472 31</canonical_bands>
                <polymorphic_bands>528 472</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>500 469 31</canonical_bands>
                <polymorphic_bands>531 469</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>500 469 31</canonical_bands>
                <polymorphic_bands>531 469</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACTTTGTCCCTATTTTCAATC</pcr_primer_p1>
		<pcr_primer_p2>TGGGTGATATGATCAACTTTATT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTACTTTGTCCCTATTTTCAATCGCTTCTTCTGGTTGCTGACGTCGATGAAAAATGCCTAAAAGATAACGGACGTCAGAAGAGACACAGACACCTCTTGGAGGACATATTTTGACATTCAATGAACGAGAAAATACAAAAAAGGAAGAGAGAAGAAATGATGCTTTTCTTTTCAACGGAAGTTGTCCATTAACTGATAACTTAACAGTAGCACCCGTAGTAGCAATAAAGTTGATCATATCACCCA</canonical_amplicon>
		<polymorphic_amplicon>TTACTTTGTCCCTATTTTCAATCGCTTCTTCTGGTTGCTGACGTCGATGAAAAATGCCTAAAAGATAACGGWCGTCAGAAGAGACACAGACACCTCTTGGAGGACATATTTTGACATTCAATGAACGAGAAAATACAAAAAAGGAAGAGAGAAGAAATGATGCTTTTCTTTTCAACGGAAGTTGTCCATTAACTGATAACTTAACAGTAGCACCCGTAGTAGCAATAAAGTTGATCATATCACCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22802</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>209072</contig_pos>
        <strand>+</strand>
        <context>AAAGATAACG[A/G]WCGTCAGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCGCTTCTTCTGGTTGCTGACGTCGATGAAAAATGCCTAAAAGATAACG</left_flank>
        <right_flank>ACGTCAGAAGAGACACAGACACCTCTTGGAGGACATATTTTGACATTCAA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGGAATCGAGATAATAATGCTCAAAGTTGAAAGTTTACGGAAAGTTTCTTGTTGACACGATGAGAAAATTTCATCCTGATTTTCCGAATCATTTCTATTCTTTTTTGGTCATAGACTGTTTCTCTCCGATTTGTCTATGTCTCGGGATCCATTCACTGGTCACAATTTGTCAAACTCGTATAAATTTATGCTGAACTATCGGGAGACACATTTTAGACTTTGTTTTTTTGTTCACAAGTTCCCTGATCCTTCTTGTGATTTTGAATTGACCATCTTCGTTCAATTCTCATCTGTTTTGATTCTCTGTTTTTTCCGGCCTCTCCTACTGCCGATTTCAGAGTGTAAAACTGTTAAAAGTCGCCATTTCGTTCCCTTCTTCTTCGTCATTTTTTTCCGTCTCGCCTCCTACGAAAACCAACCTTTTCTATTACTTTGTCCCTATTTTCAATCGCTTCTTCTGGTTGCTGACGTCGATGAAAAATGCCTAAAAGATAACGGACGTCAGAAGAGACACAGACACCTCTTGGAGGACATATTTTGACATTCAATGAACGAGAAAATACAAAAAAGGAAGAGAGAAGAAATGATGCTTTTCTTTTCAACGGAAGTTGTCCATTAACTGATAACTTAACAGTAGCACCCGTAGTAGCAATAAAGTTGATCATATCACCCAGAAGACCTGAAAAGGGCGGTCAGAAGAAGAAAACGACAGTGGGCCGAAGAAATGTAATACAACCGAATAGTTGTTGGGTCGGGTCATGTTTTCTGTTTATGACATTTTGCAACTTCAACCTTTCTTGTTCCACAATCTTCTTTTTTTTTGTTGATAATCGTCTGCCATTGTTGAATACTTATTCCCGACGAATGGTGGCATTTTGAAGAAAAACAGAAGTTTAGAATGAAATCATTTTAAACAGGGTCTCCCAAAAATGGAGAATTCGTTCTGTTTTTTTTTTTGGAAATTGAATACCGTAAAACCTGTGTAAGTCCGGCCCTTC</canonical>
            <polymorphic>ACAGGAATCGAGATAATAATGCTCAAAGTTGAAAGTTTACGGAAAGTTTCTTGTTGACACGATGAGAAAATTTCATCCTGATTTTCCGAATCATTTCTATTCTTTTTTGGTCATAGACTGTTTCTCTCCGATTTGTCTATGTCTCGGGATCCATTCACTGGTCACAATTTGTCAAACTCGTATAAATTTATGCTGAACTATCGGGAGACACATTTTAGACTTTGTTTTTTTGTTCACAAGTTCCCTGATCCTTCTTGTGATTTTGAATTGACCATCTTCGTTCAATTCTCATCTGTTTTGATTCTCTGTTTTTTCCGGCCTCTCCTACTGCCGATTTCAGAGTGTAAAACTGTTAAAAGTCGCCATTTCGTTCCCTTCTTCTTCGTCATTTTTTTCCGTCTCGCCTCCTACGAAAACCAACCTTTTCTATTACTTTGTCCCTATTTTCAATCGCTTCTTCTGGTTGCTGACGTCGATGAAAAATGCCTAAAAGATAACGRACGTCAGAAGAGACACAGACACCTCTTGGAGGACATATTTTGACATTCAATGAACGAGAAAATACAAAAAAGGAAGAGAGAAGAAATGATGCTTTTCTTTTCAACGGAAGTTGTCCATTAACTGATAACTTAACAGTAGCACCCGTAGTAGCAATAAAGTTGATCATATCACCCAGAAGACCTGAAAAGGGCGGTCAGAAGAAGAAAACGACAGTGGGCCGAAGAAATGTAATACAACCGAATAGTTGTTGGGTCGGGTCATGTTTTCTGTTTATGACATTTTGCAACTTCAACCTTTCTTGTTCCACAATCTTCTTTTTTTTTGTTGATAATCGTCTGCCATTGTTGAATACTTATTCCCGACGAATGGTGGCATTTTGAAGAAAAACAGAAGTTTAGAATGAAATCATTTTAAACAGGGTCTCCCAAAAATGGAGAATTCGTTCTGTTTTTTTTTTTGGAAATTGAATACCGTAAAACCTGTGTAAGTCCGGCCCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACGTC</site>
                <isoschizomers>
                    <enzyme>AatII</enzyme>
                    <enzyme>ZraI</enzyme>
                </isoschizomers>
                <canonical_bands>496 473 31</canonical_bands>
                <polymorphic_bands>527 473</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>499 470 31</canonical_bands>
                <polymorphic_bands>530 470</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACTTTGTCCCTATTTTCAATC</pcr_primer_p1>
		<pcr_primer_p2>TGGGTGATATGATCAACTTTATT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTACTTTGTCCCTATTTTCAATCGCTTCTTCTGGTTGCTGACGTCGATGAAAAATGCCTAAAAGATAACGGACGTCAGAAGAGACACAGACACCTCTTGGAGGACATATTTTGACATTCAATGAACGAGAAAATACAAAAAAGGAAGAGAGAAGAAATGATGCTTTTCTTTTCAACGGAAGTTGTCCATTAACTGATAACTTAACAGTAGCACCCGTAGTAGCAATAAAGTTGATCATATCACCCA</canonical_amplicon>
		<polymorphic_amplicon>TTACTTTGTCCCTATTTTCAATCGCTTCTTCTGGTTGCTGACGTCGATGAAAAATGCCTAAAAGATAACGRACGTCAGAAGAGACACAGACACCTCTTGGAGGACATATTTTGACATTCAATGAACGAGAAAATACAAAAAAGGAAGAGAGAAGAAATGATGCTTTTCTTTTCAACGGAAGTTGTCCATTAACTGATAACTTAACAGTAGCACCCGTAGTAGCAATAAAGTTGATCATATCACCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22824</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>251932</contig_pos>
        <strand>+</strand>
        <context>TGGATTTTTA[A/C]AAGGAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATATATAGAAGAACATCGGGGATTTTGTACTCGGATTTTGGATTTTTA</left_flank>
        <right_flank>AAGGAAAAATGAACTAAAAAACGAATAAAAATTGTGGGTGTAATATTGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTTTGTTCCCCTAGAAAAAGTTAATCTCTGAGTTGATCAAAACCTTCTTTCATTCCAAAATGTCTCTCTTCCGACTCCTTTTTTTTGTTGGAAACGAGTCAAAAGCCATTGAAATAGAACGTTCAATGACCATAAAAACCACCCTCTTCCTCTGCTTTCCTTAAGAATCTCAAAGTTTTCTGTCCACCGAAAAATTCGAATTTCCAGGTACTTCTCTCTCTAATTGAGTTGGGAAACGATTCCAGTGAATATCAGTATCTTAAAGTTGAATATGGAAAATAGCGAAAATAAAAAAAGAACGCACACTACAAAGTAAATGCTTGATGTTTGAACGGAATCTTTGAAGGAACTGAGTAAAAAAAGAAGATAAGAGGACACAGAAAATTTGGTTACTGGAAAAAAGAAGAAAAAATGACGAAGAAGAGAGAGGCGGTGCAGAACAAATGAAATATATAGAAGAACATCGGGGATTTTGTACTCGGATTTTGGATTTTTAAAAGGAAAAATGAACTAAAAAACGAATAAAAATTGTGGGTGTAATATTGTGTGGGTGGAGTCGACTACGGTAGTTTTGCTGAATCTCAAGCTACAACATTCGAAAGTTTAGGTCAAAACAAAGATTCCATAAATTATAAATTAAATTATGAGGGCAATTCTTAGCTAAAAATTGGTAACTTTGAAGAAAAATAATTTGTAGAAAACGTTTCCGGTTCTATAAAATTTTGAAAATATGAATGCCATATGAATTTCAAGAGCACTTGCCCAATATATCATTTTTCAGGTTTTATTATTAAGACCTAACAAAATGAGCAAAGTAAACAAGATAAATTACAACTGTATGTATATGGAAGACTTCTGCAAATTAAAAATAGGTTCCTCAGCTAATGAATAATTCTGTAAGATCCTCTCGTGACCATTTCAATATTCCCCAAAATTGTTGATTAAAAAATGTCAGTGACTCAAAAACAATTACGAATCCGGAGTTGACACGTCACAA</canonical>
            <polymorphic>GTTTTTTGTTCCCCTAGAAAAAGTTAATCTCTGAGTTGATCAAAACCTTCTTTCATTCCAAAATGTCTCTCTTCCGACTCCTTTTTTTTGTTGGAAACGAGTCAAAAGCCATTGAAATAGAACGTTCAATGACCATAAAAACCACCCTCTTCCTCTGCTTTCCTTAAGAATCTCAAAGTTTTCTGTCCACCGAAAAATTCGAATTTCCAGGTACTTCTCTCTCTAATTGAGTTGGGAAACGATTCCAGTGAATATCAGTATCTTAAAGTTGAATATGGAAAATAGCGAAAATAAAAAAAGAACGCACACTACAAAGTAAATGCTTGATGTTTGAACGGAATCTTTGAAGGAACTGAGTAAAAAAAGAAGATAAGAGGACACAGAAAATTTGGTTACTGGAAAAAAGAAGAAAAAATGACGAAGAAGAGAGAGGCGGTGCAGAACAAATGAAATATATAGAAGAACATCGGGGATTTTGTACTCGGATTTTGGATTTTTAMAAGGAAAAATGAACTAAAAAACGAATAAAAATTGTGGGTGTAATATTGTGTGGGTGGAGTCGACTACGGTAGTTTTGCTGAATCTCAAGCTACAACATTCGAAAGTTTAGGTCAAAACAAAGATTCCATAAATTATAAATTAAATTATGAGGGCAATTCTTAGCTAAAAATTGGTAACTTTGAAGAAAAATAATTTGTAGAAAACGTTTCCGGTTCTATAAAATTTTGAAAATATGAATGCCATATGAATTTCAAGAGCACTTGCCCAATATATCATTTTTCAGGTTTTATTATTAAGACCTAACAAAATGAGCAAAGTAAACAAGATAAATTACAACTGTATGTATATGGAAGACTTCTGCAAATTAAAAATAGGTTCCTCAGCTAATGAATAATTCTGTAAGATCCTCTCGTGACCATTTCAATATTCCCCAAAATTGTTGATTAAAAAATGTCAGTGACTCAAAAACAATTACGAATCCGGAGTTGACACGTCACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>234 154 143 140 99 79 72 55 24</canonical_bands>
                <polymorphic_bands>377 154 140 99 79 72 55 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTGAAGGAACTGAGTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GCTTGAGATTCAGCAAAACTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTTGAAGGAACTGAGTAAAAAAAGAAGATAAGAGGACACAGAAAATTTGGTTACTGGAAAAAAGAAGAAAAAATGACGAAGAAGAGAGAGGCGGTGCAGAACAAATGAAATATATAGAAGAACATCGGGGATTTTGTACTCGGATTTTGGATTTTTAAAAGGAAAAATGAACTAAAAAACGAATAAAAATTGTGGGTGTAATATTGTGTGGGTGGAGTCGACTACGGTAGTTTTGCTGAATCTCAAGC</canonical_amplicon>
		<polymorphic_amplicon>TCTTTGAAGGAACTGAGTAAAAAAAGAAGATAAGAGGACACAGAAAATTTGGTTACTGGAAAAAAGAAGAAAAAATGACGAAGAAGAGAGAGGCGGTGCAGAACAAATGAAATATATAGAAGAACATCGGGGATTTTGTACTCGGATTTTGGATTTTTAMAAGGAAAAATGAACTAAAAAACGAATAAAAATTGTGGGTGTAATATTGTGTGGGTGGAGTCGACTACGGTAGTTTTGCTGAATCTCAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22826</snp_id>
        <super_contig>c014000617.Contig3</super_contig>
        <contig_pos>25623</contig_pos>
        <strand></strand>
        <context>AAAACTAAAA[C/T]CCTGGGTGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTGCTCACAGGTGTTCAAACAAAAAAAAATTACAAAAAAAAAACTAAAA</left_flank>
        <right_flank>CCTGGGTGCATTCTTTGGGCAATGATTTGTACCTGAAGTATAACAAATTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCATTTTGTAGCACTCGTTGAGTTCTATCATATTTAATTTATTCATTTAATTTAGTTTAGTGAAAAACATTAATTCTAAAAGAAGCTATGACAGATCCCGCGAAGGCCCGGCAAAGACCCGGTTGCAAGTATATCAAAAATAAATGTTATACTACAATCAAATGACACCAAAAACCCATTTAGTTACTGTACATTTGATGATATTTGCTTTCACAGATACAATGAAGCTTTCAACTCCAAAAATGTTCAAGAATCATCTAAACAGCTGAACAAATATTCTAAAAAATGTGGGTGTACGGTTCTCAGAATTGGAAAAATGAAAACTTGGAAATCGGAAAAACTGAAAAATAGGTGATAAGAAGAACGATACCAATAACCAAGTGATAACAAAGTCTTGAATTTTCGGATACTTATATTTTTAGGAAACGTGAAATTTTCAATTCTTAAACTGCTCACAGGTGTTCAAACAAAAAAAAATTACAAAAAAAAAACTAAAACCCTGGGTGCATTCTTTGGGCAATGATTTGTACCTGAAGTATAACAAATTGATACACCGAGAACAATTGAAAAGTATATAAGCAACCGCCTAGCTCAGGGATCCTTACTTTTCAGCTCCTTCCCAAAGTGTAGCTCATCCCAAGTCATGATTGCTCTAATTTCTCTAGTTTTGGCAGTTTTGGCTCCACAGGCTCAAGCAGTCATCGGTGGAGATCTCAATTGTACCACCTATAATGGAACGGCGGTAAGAGGATTTTTAGAATGTTCTAGAAGATTTCAAAAAAAAAAAAGGTTTCAGTAGTTAAGAAGGTTCTAAAGTGCCCTGATTTTCATAAAACTTTCTGGAACGTTCTAGAATCTTTTAATACACCTAGAGCCTCTGTGGTCTTGAATCAGAAAAACTACGGTTTTCCTAGGTTTTTCAAATGTTCTAAGACTCGGGACACATGAAATCTTACGAATCAAGACCCCCAACCCCCTAATGTCCCCATATTTCAGTT</canonical>
            <polymorphic>TATCATTTTGTAGCACTCGTTGAGTTCTATCATATTTAATTTATTCATTTAATTTAGTTTAGTGAAAAACATTAATTCTAAAAGAAGCTATGACAGATCCCGCGAAGGCCCGGCAAAGACCCGGTTGCAAGTATATCAAAAATAAATGTTATACTACAATCAAATGACACCAAAAACCCATTTAGTTACTGTACATTTGATGATATTTGCTTTCACAGATACAATGAAGCTTTCAACTCCAAAAATGTTCAAGAATCATCTAAACAGCTGAACAAATATTCTAAAAAATGTGGGTGTACGGTTCTCAGAATTGGAAAAATGAAAACTTGGAAATCGGAAAAACTGAAAAATAGGTGATAAGAAGAACGATACCAATAACCAAGTGATAACAAAGTCTTGAATTTTCGGATACTTATATTTTTAGGAAACGTGAAATTTTCAATTCTTAAACTGCTCACAGGTGTTCAAACAAAAAAAAATTACAAAAAAAAAACTAAAAYCCTGGGTGCATTCTTTGGGCAATGATTTGTACCTGAAGTATAACAAATTGATACACCGAGAACAATTGAAAAGTATATAAGCAACCGCCTAGCTCAGGGATCCTTACTTTTCAGCTCCTTCCCAAAGTGTAGCTCATCCCAAGTCATGATTGCTCTAATTTCTCTAGTTTTGGCAGTTTTGGCTCCACAGGCTCAAGCAGTCATCGGTGGAGATCTCAATTGTACCACCTATAATGGAACGGCGGTAAGAGGATTTTTAGAATGTTCTAGAAGATTTCAAAAAAAAAAAAGGTTTCAGTAGTTAAGAAGGTTCTAAAGTGCCCTGATTTTCATAAAACTTTCTGGAACGTTCTAGAATCTTTTAATACACCTAGAGCCTCTGTGGTCTTGAATCAGAAAAACTACGGTTTTCCTAGGTTTTTCAAATGTTCTAAGACTCGGGACACATGAAATCTTACGAATCAAGACCCCCAACCCCCTAATGTCCCCATATTTCAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>500 411 88 1</canonical_bands>
                <polymorphic_bands>501 411 88</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATTTTCAATTCTTAAACTGC</pcr_primer_p1>
		<pcr_primer_p2>AAAACTGCCAAAACTAGAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAATTTTCAATTCTTAAACTGCTCACAGGTGTTCAAACAAAAAAAAATTACAAAAAAAAAACTAAAACCCTGGGTGCATTCTTTGGGCAATGATTTGTACCTGAAGTATAACAAATTGATACACCGAGAACAATTGAAAAGTATATAAGCAACCGCCTAGCTCAGGGATCCTTACTTTTCAGCTCCTTCCCAAAGTGTAGCTCATCCCAAGTCATGATTGCTCTAATTTCTCTAGTTTTGGCAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAAATTTTCAATTCTTAAACTGCTCACAGGTGTTCAAACAAAAAAAAATTACAAAAAAAAAACTAAAAYCCTGGGTGCATTCTTTGGGCAATGATTTGTACCTGAAGTATAACAAATTGATACACCGAGAACAATTGAAAAGTATATAAGCAACCGCCTAGCTCAGGGATCCTTACTTTTCAGCTCCTTCCCAAAGTGTAGCTCATCCCAAGTCATGATTGCTCTAATTTCTCTAGTTTTGGCAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22827</snp_id>
        <super_contig>c014000617.Contig3</super_contig>
        <contig_pos>25745</contig_pos>
        <strand>+</strand>
        <context>CAGCTCCTTC[C/T]CAAAGTGTAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTATATAAGCAACCGCCTAGCTCAGGGATCCTTACTTTTCAGCTCCTTC</left_flank>
        <right_flank>CAAAGTGTAGCTCATCCCAAGTCATGATTGCTCTAATTTCTCTAGTTTTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTGCAAGTATATCAAAAATAAATGTTATACTACAATCAAATGACACCAAAAACCCATTTAGTTACTGTACATTTGATGATATTTGCTTTCACAGATACAATGAAGCTTTCAACTCCAAAAATGTTCAAGAATCATCTAAACAGCTGAACAAATATTCTAAAAAATGTGGGTGTACGGTTCTCAGAATTGGAAAAATGAAAACTTGGAAATCGGAAAAACTGAAAAATAGGTGATAAGAAGAACGATACCAATAACCAAGTGATAACAAAGTCTTGAATTTTCGGATACTTATATTTTTAGGAAACGTGAAATTTTCAATTCTTAAACTGCTCACAGGTGTTCAAACAAAAAAAAATTACAAAAAAAAAACTAAAACCCTGGGTGCATTCTTTGGGCAATGATTTGTACCTGAAGTATAACAAATTGATACACCGAGAACAATTGAAAAGTATATAAGCAACCGCCTAGCTCAGGGATCCTTACTTTTCAGCTCCTTCCCAAAGTGTAGCTCATCCCAAGTCATGATTGCTCTAATTTCTCTAGTTTTGGCAGTTTTGGCTCCACAGGCTCAAGCAGTCATCGGTGGAGATCTCAATTGTACCACCTATAATGGAACGGCGGTAAGAGGATTTTTAGAATGTTCTAGAAGATTTCAAAAAAAAAAAAGGTTTCAGTAGTTAAGAAGGTTCTAAAGTGCCCTGATTTTCATAAAACTTTCTGGAACGTTCTAGAATCTTTTAATACACCTAGAGCCTCTGTGGTCTTGAATCAGAAAAACTACGGTTTTCCTAGGTTTTTCAAATGTTCTAAGACTCGGGACACATGAAATCTTACGAATCAAGACCCCCAACCCCCTAATGTCCCCATATTTCAGTTCGTGTGGACCCCAGCTGCCACCGCTTGCTCCAATGTCATCTCCGACTCATCGTGCGCCATCCTCTACCCGGCACCAGTCACCGCCGATGGATTCCCATCTCCAGGACGTGACCAACAACGAC</canonical>
            <polymorphic>GGTTGCAAGTATATCAAAAATAAATGTTATACTACAATCAAATGACACCAAAAACCCATTTAGTTACTGTACATTTGATGATATTTGCTTTCACAGATACAATGAAGCTTTCAACTCCAAAAATGTTCAAGAATCATCTAAACAGCTGAACAAATATTCTAAAAAATGTGGGTGTACGGTTCTCAGAATTGGAAAAATGAAAACTTGGAAATCGGAAAAACTGAAAAATAGGTGATAAGAAGAACGATACCAATAACCAAGTGATAACAAAGTCTTGAATTTTCGGATACTTATATTTTTAGGAAACGTGAAATTTTCAATTCTTAAACTGCTCACAGGTGTTCAAACAAAAAAAAATTACAAAAAAAAAACTAAAACCCTGGGTGCATTCTTTGGGCAATGATTTGTACCTGAAGTATAACAAATTGATACACCGAGAACAATTGAAAAGTATATAAGCAACCGCCTAGCTCAGGGATCCTTACTTTTCAGCTCCTTCYCAAAGTGTAGCTCATCCCAAGTCATGATTGCTCTAATTTCTCTAGTTTTGGCAGTTTTGGCTCCACAGGCTCAAGCAGTCATCGGTGGAGATCTCAATTGTACCACCTATAATGGAACGGCGGTAAGAGGATTTTTAGAATGTTCTAGAAGATTTCAAAAAAAAAAAAGGTTTCAGTAGTTAAGAAGGTTCTAAAGTGCCCTGATTTTCATAAAACTTTCTGGAACGTTCTAGAATCTTTTAATACACCTAGAGCCTCTGTGGTCTTGAATCAGAAAAACTACGGTTTTCCTAGGTTTTTCAAATGTTCTAAGACTCGGGACACATGAAATCTTACGAATCAAGACCCCCAACCCCCTAATGTCCCCATATTTCAGTTCGTGTGGACCCCAGCTGCCACCGCTTGCTCCAATGTCATCTCCGACTCATCGTGCGCCATCCTCTACCCGGCACCAGTCACCGCCGATGGATTCCCATCTCCAGGACGTGACCAACAACGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATTTTCAATTCTTAAACTGC</pcr_primer_p1>
		<pcr_primer_p2>AAAACTGCCAAAACTAGAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAATTTTCAATTCTTAAACTGCTCACAGGTGTTCAAACAAAAAAAAATTACAAAAAAAAAACTAAAACCCTGGGTGCATTCTTTGGGCAATGATTTGTACCTGAAGTATAACAAATTGATACACCGAGAACAATTGAAAAGTATATAAGCAACCGCCTAGCTCAGGGATCCTTACTTTTCAGCTCCTTCCCAAAGTGTAGCTCATCCCAAGTCATGATTGCTCTAATTTCTCTAGTTTTGGCAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAAATTTTCAATTCTTAAACTGCTCACAGGTGTTCAAACAAAAAAAAATTACAAAAAAAAAACTAAAACCCTGGGTGCATTCTTTGGGCAATGATTTGTACCTGAAGTATAACAAATTGATACACCGAGAACAATTGAAAAGTATATAAGCAACCGCCTAGCTCAGGGATCCTTACTTTTCAGCTCCTTCYCAAAGTGTAGCTCATCCCAAGTCATGATTGCTCTAATTTCTCTAGTTTTGGCAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22828</snp_id>
        <super_contig>c014000617.Contig3</super_contig>
        <contig_pos>32116</contig_pos>
        <strand>+</strand>
        <context>AAATTTTTTT[A/T]AATGTTGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATAAAAACTGTTGAACAGACGGGAATTCAAAACTTGTAAAATTTTTTT</left_flank>
        <right_flank>AATGTTGAAACTCAAGAAAAGTTTCAAAATACCGTATTTCCTCAAATAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAATTTTTGAATTTTTGAATTTTTGAATTTCTAAATTTTTGAATTTCTGAATTGCTGAATTTCTGAATTTCTAAATTTTTGAATTTCTAAATTTTTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTGCTGAAATTTGAATTTTCCCTACTCACCGCTGTAATCTCATCTCCAAACAAGAATTTTCCCTTCATCGTATTCTGAATGATTTCCAAATCTTTATGCAAAAATTCATCCAATTCCTTCAATTCGAAATCTCCAATTGCTCCAGTATTCCTGGCATAAAATCGTTTTCCAACACTTGCTTTTACAAATGGGAGAAATAGGAATTTAAGGGCTTGAGGCATTCCAACAAGGCGATAGATGGTTTCGTAGAAAGCATGTTCAGCAGTTTTGAATCGATAGATTATGCTGGAAATTTTAGACAATTTTGACAAATAAAAACTGTTGAACAGACGGGAATTCAAAACTTGTAAAATTTTTTTAAATGTTGAAACTCAAGAAAAGTTTCAAAATACCGTATTTCCTCAAATAACCCAACCGAACCGCCCAACTAAATCGTCAACTTTGGACTCAATTATCTTGAGCTAAAGATTTAACGTTTGAGTGTATAAACGTATAAATGAGTTTAGTTTTATTCAAAGAATCTATGTATGAAGTTTCTTTGCAATATTTTTTAGATTTTGAAAAAAAAGGAAAACTTACTGAAAAAGATGGAAAAATGTCATTTTGCTCAATGCAACCGATTGGGTTTCCAGATCGCCGGAAAGAGTCTGAAAAATGTTTTTCTCAGAATTAAAAAACATTATATCGTTCAGATGTTAATGGAACTTATTCTAGCGGCTTTTGAGCTATTTTTGACTATTTTAGAAAATTTATTCGACAAATTTGAGGTACCGTAAAGACTCTAATAGAACGCCACCCGGACCGTCCGCTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAAGTTGTCAAC</canonical>
            <polymorphic>TGAATTTTTGAATTTTTGAATTTTTGAATTTCTAAATTTTTGAATTTCTGAATTGCTGAATTTCTGAATTTCTAAATTTTTGAATTTCTAAATTTTTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTGCTGAAATTTGAATTTTCCCTACTCACCGCTGTAATCTCATCTCCAAACAAGAATTTTCCCTTCATCGTATTCTGAATGATTTCCAAATCTTTATGCAAAAATTCATCCAATTCCTTCAATTCGAAATCTCCAATTGCTCCAGTATTCCTGGCATAAAATCGTTTTCCAACACTTGCTTTTACAAATGGGAGAAATAGGAATTTAAGGGCTTGAGGCATTCCAACAAGGCGATAGATGGTTTCGTAGAAAGCATGTTCAGCAGTTTTGAATCGATAGATTATGCTGGAAATTTTAGACAATTTTGACAAATAAAAACTGTTGAACAGACGGGAATTCAAAACTTGTAAAATTTTTTTWAATGTTGAAACTCAAGAAAAGTTTCAAAATACCGTATTTCCTCAAATAACCCAACCGAACCGCCCAACTAAATCGTCAACTTTGGACTCAATTATCTTGAGCTAAAGATTTAACGTTTGAGTGTATAAACGTATAAATGAGTTTAGTTTTATTCAAAGAATCTATGTATGAAGTTTCTTTGCAATATTTTTTAGATTTTGAAAAAAAAGGAAAACTTACTGAAAAAGATGGAAAAATGTCATTTTGCTCAATGCAACCGATTGGGTTTCCAGATCGCCGGAAAGAGTCTGAAAAATGTTTTTCTCAGAATTAAAAAACATTATATCGTTCAGATGTTAATGGAACTTATTCTAGCGGCTTTTGAGCTATTTTTGACTATTTTAGAAAATTTATTCGACAAATTTGAGGTACCGTAAAGACTCTAATAGAACGCCACCCGGACCGTCCGCTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAAGTTGTCAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>345 200 164 153 112 26</canonical_bands>
                <polymorphic_bands>345 265 200 164 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGACAAATAAAAACTGTTGA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATATTGCAAAGAAACTTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTGACAAATAAAAACTGTTGAACAGACGGGAATTCAAAACTTGTAAAATTTTTTTAAATGTTGAAACTCAAGAAAAGTTTCAAAATACCGTATTTCCTCAAATAACCCAACCGAACCGCCCAACTAAATCGTCAACTTTGGACTCAATTATCTTGAGCTAAAGATTTAACGTTTGAGTGTATAAACGTATAAATGAGTTTAGTTTTATTCAAAGAATCTATGTATGAAGTTTCTTTGCAATATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGACAAATAAAAACTGTTGAACAGACGGGAATTCAAAACTTGTAAAATTTTTTTWAATGTTGAAACTCAAGAAAAGTTTCAAAATACCGTATTTCCTCAAATAACCCAACCGAACCGCCCAACTAAATCGTCAACTTTGGACTCAATTATCTTGAGCTAAAGATTTAACGTTTGAGTGTATAAACGTATAAATGAGTTTAGTTTTATTCAAAGAATCTATGTATGAAGTTTCTTTGCAATATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22829</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>36080</contig_pos>
        <strand>+</strand>
        <context>AGTGGAAGAG[G/T]SAACATCTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGGAATTCAAAAAATTGATTTTTAGAAGTTCAACGAATAAAGTGGAAGAG</left_flank>
        <right_flank>GAACATCTGGGAACAGAGCATCGGTTTCCAGGAACTCCATTTTCGAATAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAATTTTTGCAAAAAAAAAATATCTGCTTCAAGGATTTTATAAAATCTGTGTCTCATTTCAAATACAATGTCAAAACAATCATCACTGCAAACCATAAAAATCCATGTTAAAAAAAAACAAAAATTGACATTTTTTAATTTGATTTTTTGAACATATTTTCCATAACCCATATGGATAAAATTGAAATTTTAACCATCAAGTTTATTATAGTTACAAATTGAAACGCAATTTTTTCAGGAGAAAAGAAAAATCATAATTCAAAATTTTCAGATCTTCATTCAATGCTGCATAATTTGTTTCTTCAATTCCTGTACAGCAATCTTCTACAACGTCCTCGCCTTCATTACTCCATCTCCAGCAATTTTGGTTTTTGGTCAATTATGTTGGTCAATTAATCACGGATGTCCTGCATTGATCTACGTCACATTGAATGACACCATTCGGCGGGAATTCAAAAAATTGATTTTTAGAAGTTCAACGAATAAAGTGGAAGAGGGAACATCTGGGAACAGAGCATCGGTTTCCAGGAACTCCATTTTCGAATATTTTGTAAAATTGTAATTTTTCTGTATCACCTAATTTTTATGTTATAAAACATAAAATGCGTGACAATGTCTTTAGATAAATTTACATTTATTTTCATAAATTCCAACAATCATGTCAACTACAAAGTGTCGTATTTGCAATGAGCAGACTAACGAAGAAGATGTTCAGGTATATGAAAAAACTGGGAAAATTCCGAAAATAACATTATTTTTTGCCAAAAATAAATCCCGTTTCATGAAGTTCAGATGACGCTGACCGATATATGTACTTTTGTTAAATAGTCCTGGGATTAATAGTTGTGTGCATTTTGACGTGACGGTGTTCGCACACACTGTGAACATCATCACGCAAAAATTCACCGTTTCAACTTGATCACAAAATGATAACCACTTGTGCTATAGCATACCGGAGACATGAGCAGCAAAAATAGGACACCCCCTCTCAAGACAA</canonical>
            <polymorphic>AAAAAATTTTTGCAAAAAAAAAATATCTGCTTCAAGGATTTTATAAAATCTGTGTCTCATTTCAAATACAATGTCAAAACAATCATCACTGCAAACCATAAAAATCCATGTTAAAAAAAAACAAAAATTGACATTTTTTAATTTGATTTTTTGAACATATTTTCCATAACCCATATGGATAAAATTGAAATTTTAACCATCAAGTTTATTATAGTTACAAATTGAAACGCAATTTTTTCAGGAGAAAAGAAAAATCATAATTCAAAATTTTCAGATCTTCATTCAATGCTGCATAATTTGTTTCTTCAATTCCTGTACAGCAATCTTCTACAACGTCCTCGCCTTCATTACTCCATCTCCAGCAATTTTGGTTTTTGGTCAATTATGTTGGTCAATTAATCACGGATGTCCTGCATTGATCTACGTCACATTGAATGACACCATTCGGCGGGAATTCAAAAAATTGATTTTTAGAAGTTCAACGAATAAAGTGGAAGAGKGAACATCTGGGAACAGAGCATCGGTTTCCAGGAACTCCATTTTCGAATATTTTGTAAAATTGTAATTTTTCTGTATCACCTAATTTTTATGTTATAAAACATAAAATGCGTGACAATGTCTTTAGATAAATTTACATTTATTTTCATAAATTCCAACAATCATGTCAACTACAAAGTGTCGTATTTGCAATGAGCAGACTAACGAAGAAGATGTTCAGGTATATGAAAAAACTGGGAAAATTCCGAAAATAACATTATTTTTTGCCAAAAATAAATCCCGTTTCATGAAGTTCAGATGACGCTGACCGATATATGTACTTTTGTTAAATAGTCCTGGGATTAATAGTTGTGTGCATTTTGACGTGACGGTGTTCGCACACACTGTGAACATCATCACGCAAAAATTCACCGTTTCAACTTGATCACAAAATGATAACCACTTGTGCTATAGCATACCGGAGACATGAGCAGCAAAAATAGGACACCCCCTCTCAAGACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTGATCTACGTCACATTGAA</pcr_primer_p1>
		<pcr_primer_p2>ATGATTGTTGGAATTTATGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTGATCTACGTCACATTGAATGACACCATTCGGCGGGAATTCAAAAAATTGATTTTTAGAAGTTCAACGAATAAAGTGGAAGAGGGAACATCTGGGAACAGAGCATCGGTTTCCAGGAACTCCATTTTCGAATATTTTGTAAAATTGTAATTTTTCTGTATCACCTAATTTTTATGTTATAAAACATAAAATGCGTGACAATGTCTTTAGATAAATTTACATTTATTTTCATAAATTCCAACAATCAT</canonical_amplicon>
		<polymorphic_amplicon>CATTGATCTACGTCACATTGAATGACACCATTCGGCGGGAATTCAAAAAATTGATTTTTAGAAGTTCAACGAATAAAGTGGAAGAGKGAACATCTGGGAACAGAGCATCGGTTTCCAGGAACTCCATTTTCGAATATTTTGTAAAATTGTAATTTTTCTGTATCACCTAATTTTTATGTTATAAAACATAAAATGCGTGACAATGTCTTTAGATAAATTTACATTTATTTTCATAAATTCCAACAATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22830</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>36081</contig_pos>
        <strand>+</strand>
        <context>GTGGAAGAGK[C/G]AACATCTGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGAATTCAAAAAATTGATTTTTAGAAGTTCAACGAATAAAGTGGAAGAGG</left_flank>
        <right_flank>AACATCTGGGAACAGAGCATCGGTTTCCAGGAACTCCATTTTCGAATATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATTTTTGCAAAAAAAAAATATCTGCTTCAAGGATTTTATAAAATCTGTGTCTCATTTCAAATACAATGTCAAAACAATCATCACTGCAAACCATAAAAATCCATGTTAAAAAAAAACAAAAATTGACATTTTTTAATTTGATTTTTTGAACATATTTTCCATAACCCATATGGATAAAATTGAAATTTTAACCATCAAGTTTATTATAGTTACAAATTGAAACGCAATTTTTTCAGGAGAAAAGAAAAATCATAATTCAAAATTTTCAGATCTTCATTCAATGCTGCATAATTTGTTTCTTCAATTCCTGTACAGCAATCTTCTACAACGTCCTCGCCTTCATTACTCCATCTCCAGCAATTTTGGTTTTTGGTCAATTATGTTGGTCAATTAATCACGGATGTCCTGCATTGATCTACGTCACATTGAATGACACCATTCGGCGGGAATTCAAAAAATTGATTTTTAGAAGTTCAACGAATAAAGTGGAAGAGGGAACATCTGGGAACAGAGCATCGGTTTCCAGGAACTCCATTTTCGAATATTTTGTAAAATTGTAATTTTTCTGTATCACCTAATTTTTATGTTATAAAACATAAAATGCGTGACAATGTCTTTAGATAAATTTACATTTATTTTCATAAATTCCAACAATCATGTCAACTACAAAGTGTCGTATTTGCAATGAGCAGACTAACGAAGAAGATGTTCAGGTATATGAAAAAACTGGGAAAATTCCGAAAATAACATTATTTTTTGCCAAAAATAAATCCCGTTTCATGAAGTTCAGATGACGCTGACCGATATATGTACTTTTGTTAAATAGTCCTGGGATTAATAGTTGTGTGCATTTTGACGTGACGGTGTTCGCACACACTGTGAACATCATCACGCAAAAATTCACCGTTTCAACTTGATCACAAAATGATAACCACTTGTGCTATAGCATACCGGAGACATGAGCAGCAAAAATAGGACACCCCCTCTCAAGACAAT</canonical>
            <polymorphic>AAAAATTTTTGCAAAAAAAAAATATCTGCTTCAAGGATTTTATAAAATCTGTGTCTCATTTCAAATACAATGTCAAAACAATCATCACTGCAAACCATAAAAATCCATGTTAAAAAAAAACAAAAATTGACATTTTTTAATTTGATTTTTTGAACATATTTTCCATAACCCATATGGATAAAATTGAAATTTTAACCATCAAGTTTATTATAGTTACAAATTGAAACGCAATTTTTTCAGGAGAAAAGAAAAATCATAATTCAAAATTTTCAGATCTTCATTCAATGCTGCATAATTTGTTTCTTCAATTCCTGTACAGCAATCTTCTACAACGTCCTCGCCTTCATTACTCCATCTCCAGCAATTTTGGTTTTTGGTCAATTATGTTGGTCAATTAATCACGGATGTCCTGCATTGATCTACGTCACATTGAATGACACCATTCGGCGGGAATTCAAAAAATTGATTTTTAGAAGTTCAACGAATAAAGTGGAAGAGGSAACATCTGGGAACAGAGCATCGGTTTCCAGGAACTCCATTTTCGAATATTTTGTAAAATTGTAATTTTTCTGTATCACCTAATTTTTATGTTATAAAACATAAAATGCGTGACAATGTCTTTAGATAAATTTACATTTATTTTCATAAATTCCAACAATCATGTCAACTACAAAGTGTCGTATTTGCAATGAGCAGACTAACGAAGAAGATGTTCAGGTATATGAAAAAACTGGGAAAATTCCGAAAATAACATTATTTTTTGCCAAAAATAAATCCCGTTTCATGAAGTTCAGATGACGCTGACCGATATATGTACTTTTGTTAAATAGTCCTGGGATTAATAGTTGTGTGCATTTTGACGTGACGGTGTTCGCACACACTGTGAACATCATCACGCAAAAATTCACCGTTTCAACTTGATCACAAAATGATAACCACTTGTGCTATAGCATACCGGAGACATGAGCAGCAAAAATAGGACACCCCCTCTCAAGACAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTGATCTACGTCACATTGAA</pcr_primer_p1>
		<pcr_primer_p2>ATGATTGTTGGAATTTATGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTGATCTACGTCACATTGAATGACACCATTCGGCGGGAATTCAAAAAATTGATTTTTAGAAGTTCAACGAATAAAGTGGAAGAGGGAACATCTGGGAACAGAGCATCGGTTTCCAGGAACTCCATTTTCGAATATTTTGTAAAATTGTAATTTTTCTGTATCACCTAATTTTTATGTTATAAAACATAAAATGCGTGACAATGTCTTTAGATAAATTTACATTTATTTTCATAAATTCCAACAATCAT</canonical_amplicon>
		<polymorphic_amplicon>CATTGATCTACGTCACATTGAATGACACCATTCGGCGGGAATTCAAAAAATTGATTTTTAGAAGTTCAACGAATAAAGTGGAAGAGGSAACATCTGGGAACAGAGCATCGGTTTCCAGGAACTCCATTTTCGAATATTTTGTAAAATTGTAATTTTTCTGTATCACCTAATTTTTATGTTATAAAACATAAAATGCGTGACAATGTCTTTAGATAAATTTACATTTATTTTCATAAATTCCAACAATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22831</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>41252</contig_pos>
        <strand>+</strand>
        <context>TGTGGGATAG[A/G]CACAGAAGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCACGTACACAAAGCAATTCCTCCGCATATGTAGATGAATGTGGGATAG</left_flank>
        <right_flank>CACAGAAGACAGCACCTTGGATCAGAAGGATTCCAGTTATGATGCAGCTG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCGGTACAAGGGGTACAAAGTGATTTAGGGGTACAAAACTCACAATTCGGTGGTACCTAAGACCGGGAAAAAAGCTTAGTTTGTTTCCCCGAATTGTGAGTTTTGTACCCCTAAATCACTTTGTACCCCTTGTACCCCCAAATTGTTGTACCCTCCAAACTATGTTCTCAAACTTACAAAAATCGATGCCTCCTTACTGGGTTCCTTCTCCGATAACGGATCCGATGGCCATGCCATAATCAGAGAGTTAAAACACGCTGGAGTTGTAAAGAAACTAATGTAAAACATATAAACCACACTTAAAACCATTGAGATATAACCCATTGGTTTCTCGATGACATCTGCATAATCTCGAAAACCAATACTAACGATTCGGTTGAGGAATAGGGAGAGGGTAATAGCACAAGCACCACACCACGTACACAAAGCAATTCCTCCGCATATGTAGATGAATGTGGGATAGGCACAGAAGACAGCACCTTGGATCAGAAGGATTCCAGTTATGATGCAGCTGCAACCTGAAATAAAAGTCATTTTTAGTTGAGAGCTTTATTCCAGGAAAACAAAAATGGTTGGCTTCTGTGGAGATCGAACCTGTAACCTCTTGGGAAACAGCGTAGCGCGCAAGCCACTACAAAATGGGACATCACAGCGCTCGTGGTAGTGATGGTGTATACTACAACAGCTTACTCTTTCCCCTCATCGAGAAGGGAAACTAGAATGTCAAATGTTTACTGTTGCGAAATTTAGAGTAAATTGTTTTCCAGATGCCCAAAACTCACTTATTGCACACATATCCGTTGCTGCCAACAAAACGATAATCTTATAACAAGTGTGTCGAATCAATTTAGTTTTGAAAATGATCCAAACAATTGGAATATATAGTAACTCGATGAATATTCCGAAAGTTGTGATTGGATATCCCAACCATGGTCGTTGAACCCCATTTTGCCACCATTCGGAT</canonical>
            <polymorphic>AAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCGGTACAAGGGGTACAAAGTGATTTAGGGGTACAAAACTCACAATTCGGTGGTACCTAAGACCGGGAAAAAAGCTTAGTTTGTTTCCCCGAATTGTGAGTTTTGTACCCCTAAATCACTTTGTACCCCTTGTACCCCCAAATTGTTGTACCCTCCAAACTATGTTCTCAAACTTACAAAAATCGATGCCTCCTTACTGGGTTCCTTCTCCGATAACGGATCCGATGGCCATGCCATAATCAGAGAGTTAAAACACGCTGGAGTTGTAAAGAAACTAATGTAAAACATATAAACCACACTTAAAACCATTGAGATATAACCCATTGGTTTCTCGATGACATCTGCATAATCTCGAAAACCAATACTAACGATTCGGTTGAGGAATAGGGAGAGGGTAATAGCACAAGCACCACACCACGTACACAAAGCAATTCCTCCGCATATGTAGATGAATGTGGGATAGRCACAGAAGACAGCACCTTGGATCAGAAGGATTCCAGTTATGATGCAGCTGCAACCTGAAATAAAAGTCATTTTTAGTTGAGAGCTTTATTCCAGGAAAACAAAAATGGTTGGCTTCTGTGGAGATCGAACCTGTAACCTCTTGGGAAACAGCGTAGCGCGCAAGCCACTACAAAATGGGACATCACAGCGCTCGTGGTAGTGATGGTGTATACTACAACAGCTTACTCTTTCCCCTCATCGAGAAGGGAAACTAGAATGTCAAATGTTTACTGTTGCGAAATTTAGAGTAAATTGTTTTCCAGATGCCCAAAACTCACTTATTGCACACATATCCGTTGCTGCCAACAAAACGATAATCTTATAACAAGTGTGTCGAATCAATTTAGTTTTGAAAATGATCCAAACAATTGGAATATATAGTAACTCGATGAATATTCCGAAAGTTGTGATTGGATATCCCAACCATGGTCGTTGAACCCCATTTTGCCACCATTCGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGAAAACCAATACTAACGAT</pcr_primer_p1>
		<pcr_primer_p2>TACAGGTTCGATCTCCACAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCGAAAACCAATACTAACGATTCGGTTGAGGAATAGGGAGAGGGTAATAGCACAAGCACCACACCACGTACACAAAGCAATTCCTCCGCATATGTAGATGAATGTGGGATAGGCACAGAAGACAGCACCTTGGATCAGAAGGATTCCAGTTATGATGCAGCTGCAACCTGAAATAAAAGTCATTTTTAGTTGAGAGCTTTATTCCAGGAAAACAAAAATGGTTGGCTTCTGTGGAGATCGAACCTGTA</canonical_amplicon>
		<polymorphic_amplicon>CTCGAAAACCAATACTAACGATTCGGTTGAGGAATAGGGAGAGGGTAATAGCACAAGCACCACACCACGTACACAAAGCAATTCCTCCGCATATGTAGATGAATGTGGGATAGRCACAGAAGACAGCACCTTGGATCAGAAGGATTCCAGTTATGATGCAGCTGCAACCTGAAATAAAAGTCATTTTTAGTTGAGAGCTTTATTCCAGGAAAACAAAAATGGTTGGCTTCTGTGGAGATCGAACCTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22832</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>46629</contig_pos>
        <strand></strand>
        <context>CTTGGAGAAG[G/T]KTGATTCAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGAAGTAAGAAGATAGGTCTTCGAGAAGTTTCTGGAGGAACTTGGAGAAG</left_flank>
        <right_flank>CTGATTCAAAAAATTTTGAAGCCAATCCAATATCTGAATTCTAAACTTTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATATTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCTAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTGCCGCTGCTTCTGGACTCGGAACATCTTCAGATAATGGATCTGGTAGCCAAGCCATAATATCCGAGTTGTACACAATGGAGGGGGTGAAATAGTAAATGTAGAATCCGTAAAACAACACAAATGCGATTGAAGAATATGCCAATTTCTTCTCAATCACATCTGCATATTCACGGAACCCAATGGAGATAATACGATTGGCGAATAGGGATACGGTAGCTGCACATGCCATGCACCAGGTGTCTGGAAGTAAGAAGATAGGTCTTCGAGAAGTTTCTGGAGGAACTTGGAGAAGGCTGATTCAAAAAATTTTGAAGCCAATCCAATATCTGAATTCTAAACTTTTGTCTTATGTCGAAGTGTTGAAACAGCAAGAATTAGCGTAGAACGTTTCTTGCTATTTACATTTTTAGCTCATTTATCTCGATTTCTGTAAGAAATATCAAAAATCTGCAAACTACAAAAATGTGCATGATATTACGGTAAACATTTTAGCAGTTTACAGATTTTTGATATCTCTTAAACGAACCGAGATAATTGAGCTTAAAATACGGGTGTCGTAGGTTAGTGGATGGGGCCTCAGAATTTCTAGGAAAACTCTTCCTATGGCGCCTTTTTAAACTCACTCAACACAAATCCACCGGCGACGTAGGTAAAAGTCGGATACATACAAAAAACGGATCCAATAATGAGCAATGGTCCAGTAATCAGACAACTACAACACGTGGCACTCATATCGATCATGGCCAACATCAAAATGATTTTATAACAGGCATGTCTGATGAGTTTAGTTTTA</canonical>
            <polymorphic>ATGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATATTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCTAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTGCCGCTGCTTCTGGACTCGGAACATCTTCAGATAATGGATCTGGTAGCCAAGCCATAATATCCGAGTTGTACACAATGGAGGGGGTGAAATAGTAAATGTAGAATCCGTAAAACAACACAAATGCGATTGAAGAATATGCCAATTTCTTCTCAATCACATCTGCATATTCACGGAACCCAATGGAGATAATACGATTGGCGAATAGGGATACGGTAGCTGCACATGCCATGCACCAGGTGTCTGGAAGTAAGAAGATAGGTCTTCGAGAAGTTTCTGGAGGAACTTGGAGAAGKCTGATTCAAAAAATTTTGAAGCCAATCCAATATCTGAATTCTAAACTTTTGTCTTATGTCGAAGTGTTGAAACAGCAAGAATTAGCGTAGAACGTTTCTTGCTATTTACATTTTTAGCTCATTTATCTCGATTTCTGTAAGAAATATCAAAAATCTGCAAACTACAAAAATGTGCATGATATTACGGTAAACATTTTAGCAGTTTACAGATTTTTGATATCTCTTAAACGAACCGAGATAATTGAGCTTAAAATACGGGTGTCGTAGGTTAGTGGATGGGGCCTCAGAATTTCTAGGAAAACTCTTCCTATGGCGCCTTTTTAAACTCACTCAACACAAATCCACCGGCGACGTAGGTAAAAGTCGGATACATACAAAAAACGGATCCAATAATGAGCAATGGTCCAGTAATCAGACAACTACAACACGTGGCACTCATATCGATCATGGCCAACATCAAAATGATTTTATAACAGGCATGTCTGATGAGTTTAGTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>169 165 129 127 105 96 77 50 35 21 21 5</canonical_bands>
                <polymorphic_bands>169 165 129 127 105 98 96 50 35 21 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAATATGCCAATTTCTTCTCA</pcr_primer_p1>
		<pcr_primer_p2>CTAATTCTTGCTGTTTCAACACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGAATATGCCAATTTCTTCTCAATCACATCTGCATATTCACGGAACCCAATGGAGATAATACGATTGGCGAATAGGGATACGGTAGCTGCACATGCCATGCACCAGGTGTCTGGAAGTAAGAAGATAGGTCTTCGAGAAGTTTCTGGAGGAACTTGGAGAAGGCTGATTCAAAAAATTTTGAAGCCAATCCAATATCTGAATTCTAAACTTTTGTCTTATGTCGAAGTGTTGAAACAGCAAGAATTAG</canonical_amplicon>
		<polymorphic_amplicon>AGAATATGCCAATTTCTTCTCAATCACATCTGCATATTCACGGAACCCAATGGAGATAATACGATTGGCGAATAGGGATACGGTAGCTGCACATGCCATGCACCAGGTGTCTGGAAGTAAGAAGATAGGTCTTCGAGAAGTTTCTGGAGGAACTTGGAGAAGKCTGATTCAAAAAATTTTGAAGCCAATCCAATATCTGAATTCTAAACTTTTGTCTTATGTCGAAGTGTTGAAACAGCAAGAATTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22833</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>50936</contig_pos>
        <strand>+</strand>
        <context>AAAATTTKTA[C/T]CAGGAAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAGAATGAAGTTTTTTGGATTCGGCTGCTACATCAGAAAAAAATTTTTA</left_flank>
        <right_flank>CAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGAAGCATGTGGTGACCTCGTTGATCATCCAGAAGCTCAAATCGTTGCCAGCTGCTCATGATGGGGTACTGTACCACGTGGAATTGCAGGCAGATACGAAGCGTAGACTTCTTCGCGTCCGCACCAAGGAATATCATTCCAGAGTGTTGTGTGAATTTTCGCAAATGTGAGAGTTTCGAATTTTTTTTGACAAAAAATAACAAAATTTTGGACTTTTTGAACCCAAAAATTTCGATTTTTTCCATTATTTTTTAAAATGAAACTAGACGAAAAATAATCCAAAAAATTGACTTTTTGAGCCCAAAAATTTATTTTTAATTTCTTAATTCTCAGCGCGGAACACATCATTTTCGTTCTGGATTTCGGGAGATTTGTCAAGGATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATGTGTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTACATCAGAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATTTTCGAATTTTAGAATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGTTCCTTCTGGAATTTTCGGAATTTCAAGATTTTTGAGGATTTTCTGATTTTTAAAATTTTGAATTTTTGAAATTTTTAGAATTGTCAGTTTTCTTGGATTTTTTCAAGCTTTTCGAATGTTTTGAATTTTTTGAAAAAGCTTTTGAATACTTGGAATTTTCAAAATTTTTGGAATTTCTCGAAATTTCAGAAAGTTTAAAAAAATGTAATTTTTTGTGAGATCTGAAATTTTGAACCAATTTGAAACAATTTCGGTTTCGAAATATCCACAATTTCATCTGAAAATCTGGAACAATTGATCTGAATGTGGTAATTAGGGACTGAAAACTCAAAAATCGAATTTTGAAATTGA</canonical>
            <polymorphic>GTGAAGCATGTGGTGACCTCGTTGATCATCCAGAAGCTCAAATCGTTGCCAGCTGCTCATGATGGGGTACTGTACCACGTGGAATTGCAGGCAGATACGAAGCGTAGACTTCTTCGCGTCCGCACCAAGGAATATCATTCCAGAGTGTTGTGTGAATTTTCGCAAATGTGAGAGTTTCGAATTTTTTTTGACAAAAAATAACAAAATTTTGGACTTTTTGAACCCAAAAATTTCGATTTTTTCCATTATTTTTTAAAATGAAACTAGACGAAAAATAATCCAAAAAATTGACTTTTTGAGCCCAAAAATTTATTTTTAATTTCTTAATTCTCAGCGCGGAACACATCATTTTCGTTCTGGATTTCGGGAGATTTGTCAAGGATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATGTGTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTACATCAGAAAAAAATTTTTAYCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATTTTCGAATTTTAGAATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGTTCCTTCTGGAATTTTCGGAATTTCAAGATTTTTGAGGATTTTCTGATTTTTAAAATTTTGAATTTTTGAAATTTTTAGAATTGTCAGTTTTCTTGGATTTTTTCAAGCTTTTCGAATGTTTTGAATTTTTTGAAAAAGCTTTTGAATACTTGGAATTTTCAAAATTTTTGGAATTTCTCGAAATTTCAGAAAGTTTAAAAAAATGTAATTTTTTGTGAGATCTGAAATTTTGAACCAATTTGAAACAATTTCGGTTTCGAAATATCCACAATTTCATCTGAAAATCTGGAACAATTGATCTGAATGTGGTAATTAGGGACTGAAAACTCAAAAATCGAATTTTGAAATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>217 154 153 136 109 82 65 30 28 18 8</canonical_bands>
                <polymorphic_bands>290 217 153 109 82 65 30 28 18 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACACATCATTTTCGTTCTG</pcr_primer_p1>
		<pcr_primer_p2>ATTTCCAATATTTCCGAACTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAACACATCATTTTCGTTCTGGATTTCGGGAGATTTGTCAAGGATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATGTGTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTACATCAGAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAAT</canonical_amplicon>
		<polymorphic_amplicon>GAACACATCATTTTCGTTCTGGATTTCGGGAGATTTGTCAAGGATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATGTGTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTACATCAGAAAAAAATTTTTAYCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22834</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>50933</contig_pos>
        <strand>+</strand>
        <context>AAAAAAATTT[G/T]TAYCAGGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGATAGAATGAAGTTTTTTGGATTCGGCTGCTACATCAGAAAAAAATTT</left_flank>
        <right_flank>TATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCGTGAAGCATGTGGTGACCTCGTTGATCATCCAGAAGCTCAAATCGTTGCCAGCTGCTCATGATGGGGTACTGTACCACGTGGAATTGCAGGCAGATACGAAGCGTAGACTTCTTCGCGTCCGCACCAAGGAATATCATTCCAGAGTGTTGTGTGAATTTTCGCAAATGTGAGAGTTTCGAATTTTTTTTGACAAAAAATAACAAAATTTTGGACTTTTTGAACCCAAAAATTTCGATTTTTTCCATTATTTTTTAAAATGAAACTAGACGAAAAATAATCCAAAAAATTGACTTTTTGAGCCCAAAAATTTATTTTTAATTTCTTAATTCTCAGCGCGGAACACATCATTTTCGTTCTGGATTTCGGGAGATTTGTCAAGGATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATGTGTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTACATCAGAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATTTTCGAATTTTAGAATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGTTCCTTCTGGAATTTTCGGAATTTCAAGATTTTTGAGGATTTTCTGATTTTTAAAATTTTGAATTTTTGAAATTTTTAGAATTGTCAGTTTTCTTGGATTTTTTCAAGCTTTTCGAATGTTTTGAATTTTTTGAAAAAGCTTTTGAATACTTGGAATTTTCAAAATTTTTGGAATTTCTCGAAATTTCAGAAAGTTTAAAAAAATGTAATTTTTTGTGAGATCTGAAATTTTGAACCAATTTGAAACAATTTCGGTTTCGAAATATCCACAATTTCATCTGAAAATCTGGAACAATTGATCTGAATGTGGTAATTAGGGACTGAAAACTCAAAAATCGAATTTTGAAAT</canonical>
            <polymorphic>TCCGTGAAGCATGTGGTGACCTCGTTGATCATCCAGAAGCTCAAATCGTTGCCAGCTGCTCATGATGGGGTACTGTACCACGTGGAATTGCAGGCAGATACGAAGCGTAGACTTCTTCGCGTCCGCACCAAGGAATATCATTCCAGAGTGTTGTGTGAATTTTCGCAAATGTGAGAGTTTCGAATTTTTTTTGACAAAAAATAACAAAATTTTGGACTTTTTGAACCCAAAAATTTCGATTTTTTCCATTATTTTTTAAAATGAAACTAGACGAAAAATAATCCAAAAAATTGACTTTTTGAGCCCAAAAATTTATTTTTAATTTCTTAATTCTCAGCGCGGAACACATCATTTTCGTTCTGGATTTCGGGAGATTTGTCAAGGATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATGTGTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTACATCAGAAAAAAATTTKTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATTTTCGAATTTTAGAATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGTTCCTTCTGGAATTTTCGGAATTTCAAGATTTTTGAGGATTTTCTGATTTTTAAAATTTTGAATTTTTGAAATTTTTAGAATTGTCAGTTTTCTTGGATTTTTTCAAGCTTTTCGAATGTTTTGAATTTTTTGAAAAAGCTTTTGAATACTTGGAATTTTCAAAATTTTTGGAATTTCTCGAAATTTCAGAAAGTTTAAAAAAATGTAATTTTTTGTGAGATCTGAAATTTTGAACCAATTTGAAACAATTTCGGTTTCGAAATATCCACAATTTCATCTGAAAATCTGGAACAATTGATCTGAATGTGGTAATTAGGGACTGAAAACTCAAAAATCGAATTTTGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACACATCATTTTCGTTCTG</pcr_primer_p1>
		<pcr_primer_p2>ATTTCCAATATTTCCGAACTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAACACATCATTTTCGTTCTGGATTTCGGGAGATTTGTCAAGGATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATGTGTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTACATCAGAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAAT</canonical_amplicon>
		<polymorphic_amplicon>GAACACATCATTTTCGTTCTGGATTTCGGGAGATTTGTCAAGGATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATGTGTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTACATCAGAAAAAAATTTKTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22835</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>50917</contig_pos>
        <strand>+</strand>
        <context>TCGGCTRCTA[C/T]ATCAGAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTA</left_flank>
        <right_flank>ATCAGAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACAGTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTTGTCCCATCGATCCGTGAAGCATGTGGTGACCTCGTTGATCATCCAGAAGCTCAAATCGTTGCCAGCTGCTCATGATGGGGTACTGTACCACGTGGAATTGCAGGCAGATACGAAGCGTAGACTTCTTCGCGTCCGCACCAAGGAATATCATTCCAGAGTGTTGTGTGAATTTTCGCAAATGTGAGAGTTTCGAATTTTTTTTGACAAAAAATAACAAAATTTTGGACTTTTTGAACCCAAAAATTTCGATTTTTTCCATTATTTTTTAAAATGAAACTAGACGAAAAATAATCCAAAAAATTGACTTTTTGAGCCCAAAAATTTATTTTTAATTTCTTAATTCTCAGCGCGGAACACATCATTTTCGTTCTGGATTTCGGGAGATTTGTCAAGGATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATGTGTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTACATCAGAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATTTTCGAATTTTAGAATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGTTCCTTCTGGAATTTTCGGAATTTCAAGATTTTTGAGGATTTTCTGATTTTTAAAATTTTGAATTTTTGAAATTTTTAGAATTGTCAGTTTTCTTGGATTTTTTCAAGCTTTTCGAATGTTTTGAATTTTTTGAAAAAGCTTTTGAATACTTGGAATTTTCAAAATTTTTGGAATTTCTCGAAATTTCAGAAAGTTTAAAAAAATGTAATTTTTTGTGAGATCTGAAATTTTGAACCAATTTGAAACAATTTCGGTTTCGAAATATCCACAATTTCATCTGAAAATCTGGAACAATTGATCTGAATGTGGTAATTAGGGACTGAAAACTCAAA</canonical>
            <polymorphic>ATTCTTGTCCCATCGATCCGTGAAGCATGTGGTGACCTCGTTGATCATCCAGAAGCTCAAATCGTTGCCAGCTGCTCATGATGGGGTACTGTACCACGTGGAATTGCAGGCAGATACGAAGCGTAGACTTCTTCGCGTCCGCACCAAGGAATATCATTCCAGAGTGTTGTGTGAATTTTCGCAAATGTGAGAGTTTCGAATTTTTTTTGACAAAAAATAACAAAATTTTGGACTTTTTGAACCCAAAAATTTCGATTTTTTCCATTATTTTTTAAAATGAAACTAGACGAAAAATAATCCAAAAAATTGACTTTTTGAGCCCAAAAATTTATTTTTAATTTCTTAATTCTCAGCGCGGAACACATCATTTTCGTTCTGGATTTCGGGAGATTTGTCAAGGATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATGTGTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTAYATCAGAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATTTTCGAATTTTAGAATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGTTCCTTCTGGAATTTTCGGAATTTCAAGATTTTTGAGGATTTTCTGATTTTTAAAATTTTGAATTTTTGAAATTTTTAGAATTGTCAGTTTTCTTGGATTTTTTCAAGCTTTTCGAATGTTTTGAATTTTTTGAAAAAGCTTTTGAATACTTGGAATTTTCAAAATTTTTGGAATTTCTCGAAATTTCAGAAAGTTTAAAAAAATGTAATTTTTTGTGAGATCTGAAATTTTGAACCAATTTGAAACAATTTCGGTTTCGAAATATCCACAATTTCATCTGAAAATCTGGAACAATTGATCTGAATGTGGTAATTAGGGACTGAAAACTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACACATCATTTTCGTTCTG</pcr_primer_p1>
		<pcr_primer_p2>ATTTCCAATATTTCCGAACTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAACACATCATTTTCGTTCTGGATTTCGGGAGATTTGTCAAGGATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATGTGTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTACATCAGAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAAT</canonical_amplicon>
		<polymorphic_amplicon>GAACACATCATTTTCGTTCTGGATTTCGGGAGATTTGTCAAGGATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATGTGTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTAYATCAGAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22836</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>50913</contig_pos>
        <strand>+</strand>
        <context>GGATTCGGCT[A/G]CTAYATCAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCT</left_flank>
        <right_flank>CTACATCAGAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAATTCTTGTCCCATCGATCCGTGAAGCATGTGGTGACCTCGTTGATCATCCAGAAGCTCAAATCGTTGCCAGCTGCTCATGATGGGGTACTGTACCACGTGGAATTGCAGGCAGATACGAAGCGTAGACTTCTTCGCGTCCGCACCAAGGAATATCATTCCAGAGTGTTGTGTGAATTTTCGCAAATGTGAGAGTTTCGAATTTTTTTTGACAAAAAATAACAAAATTTTGGACTTTTTGAACCCAAAAATTTCGATTTTTTCCATTATTTTTTAAAATGAAACTAGACGAAAAATAATCCAAAAAATTGACTTTTTGAGCCCAAAAATTTATTTTTAATTTCTTAATTCTCAGCGCGGAACACATCATTTTCGTTCTGGATTTCGGGAGATTTGTCAAGGATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATGTGTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTACATCAGAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATTTTCGAATTTTAGAATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGTTCCTTCTGGAATTTTCGGAATTTCAAGATTTTTGAGGATTTTCTGATTTTTAAAATTTTGAATTTTTGAAATTTTTAGAATTGTCAGTTTTCTTGGATTTTTTCAAGCTTTTCGAATGTTTTGAATTTTTTGAAAAAGCTTTTGAATACTTGGAATTTTCAAAATTTTTGGAATTTCTCGAAATTTCAGAAAGTTTAAAAAAATGTAATTTTTTGTGAGATCTGAAATTTTGAACCAATTTGAAACAATTTCGGTTTCGAAATATCCACAATTTCATCTGAAAATCTGGAACAATTGATCTGAATGTGGTAATTAGGGACTGAAAACT</canonical>
            <polymorphic>TGGAATTCTTGTCCCATCGATCCGTGAAGCATGTGGTGACCTCGTTGATCATCCAGAAGCTCAAATCGTTGCCAGCTGCTCATGATGGGGTACTGTACCACGTGGAATTGCAGGCAGATACGAAGCGTAGACTTCTTCGCGTCCGCACCAAGGAATATCATTCCAGAGTGTTGTGTGAATTTTCGCAAATGTGAGAGTTTCGAATTTTTTTTGACAAAAAATAACAAAATTTTGGACTTTTTGAACCCAAAAATTTCGATTTTTTCCATTATTTTTTAAAATGAAACTAGACGAAAAATAATCCAAAAAATTGACTTTTTGAGCCCAAAAATTTATTTTTAATTTCTTAATTCTCAGCGCGGAACACATCATTTTCGTTCTGGATTTCGGGAGATTTGTCAAGGATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATGTGTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTRCTACATCAGAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATTTTCGAATTTTAGAATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGTTCCTTCTGGAATTTTCGGAATTTCAAGATTTTTGAGGATTTTCTGATTTTTAAAATTTTGAATTTTTGAAATTTTTAGAATTGTCAGTTTTCTTGGATTTTTTCAAGCTTTTCGAATGTTTTGAATTTTTTGAAAAAGCTTTTGAATACTTGGAATTTTCAAAATTTTTGGAATTTCTCGAAATTTCAGAAAGTTTAAAAAAATGTAATTTTTTGTGAGATCTGAAATTTTGAACCAATTTGAAACAATTTCGGTTTCGAAATATCCACAATTTCATCTGAAAATCTGGAACAATTGATCTGAATGTGGTAATTAGGGACTGAAAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 422 78</canonical_bands>
                <polymorphic_bands>922 78</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>503 422 75</canonical_bands>
                <polymorphic_bands>925 75</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACACATCATTTTCGTTCTG</pcr_primer_p1>
		<pcr_primer_p2>ATTTCCAATATTTCCGAACTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAACACATCATTTTCGTTCTGGATTTCGGGAGATTTGTCAAGGATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATGTGTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTACATCAGAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAAT</canonical_amplicon>
		<polymorphic_amplicon>GAACACATCATTTTCGTTCTGGATTTCGGGAGATTTGTCAAGGATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATGTGTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTRCTACATCAGAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22837</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>50860</contig_pos>
        <strand>+</strand>
        <context>AACTTTTATG[G/T]GTTTTTGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTCAAGGATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATG</left_flank>
        <right_flank>GTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGG</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGACTTTTTTGTAATATTGATTTTTCCGTCGCTCCAGCACCGTCGCCGAGTTGGAATTCTTGTCCCATCGATCCGTGAAGCATGTGGTGACCTCGTTGATCATCCAGAAGCTCAAATCGTTGCCAGCTGCTCATGATGGGGTACTGTACCACGTGGAATTGCAGGCAGATACGAAGCGTAGACTTCTTCGCGTCCGCACCAAGGAATATCATTCCAGAGTGTTGTGTGAATTTTCGCAAATGTGAGAGTTTCGAATTTTTTTTGACAAAAAATAACAAAATTTTGGACTTTTTGAACCCAAAAATTTCGATTTTTTCCATTATTTTTTAAAATGAAACTAGACGAAAAATAATCCAAAAAATTGACTTTTTGAGCCCAAAAATTTATTTTTAATTTCTTAATTCTCAGCGCGGAACACATCATTTTCGTTCTGGATTTCGGGAGATTTGTCAAGGATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATGTGTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTACATCAGAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATTTTCGAATTTTAGAATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGTTCCTTCTGGAATTTTCGGAATTTCAAGATTTTTGAGGATTTTCTGATTTTTAAAATTTTGAATTTTTGAAATTTTTAGAATTGTCAGTTTTCTTGGATTTTTTCAAGCTTTTCGAATGTTTTGAATTTTTTGAAAAAGCTTTTGAATACTTGGAATTTTCAAAATTTTTGGAATTTCTCGAAATTTCAGAAAGTTTAAAAAAATGTAATTTTTTGTGAGATCTGAAATTTTGAACCAATTTGAAACAATTTCGGTTTCGAAATATCCACAATTTC</canonical>
            <polymorphic>ATCGACTTTTTTGTAATATTGATTTTTCCGTCGCTCCAGCACCGTCGCCGAGTTGGAATTCTTGTCCCATCGATCCGTGAAGCATGTGGTGACCTCGTTGATCATCCAGAAGCTCAAATCGTTGCCAGCTGCTCATGATGGGGTACTGTACCACGTGGAATTGCAGGCAGATACGAAGCGTAGACTTCTTCGCGTCCGCACCAAGGAATATCATTCCAGAGTGTTGTGTGAATTTTCGCAAATGTGAGAGTTTCGAATTTTTTTTGACAAAAAATAACAAAATTTTGGACTTTTTGAACCCAAAAATTTCGATTTTTTCCATTATTTTTTAAAATGAAACTAGACGAAAAATAATCCAAAAAATTGACTTTTTGAGCCCAAAAATTTATTTTTAATTTCTTAATTCTCAGCGCGGAACACATCATTTTCGTTCTGGATTTCGGGAGATTTGTCAAGGATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATGKGTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTACATCAGAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATTTTCGAATTTTAGAATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGTTCCTTCTGGAATTTTCGGAATTTCAAGATTTTTGAGGATTTTCTGATTTTTAAAATTTTGAATTTTTGAAATTTTTAGAATTGTCAGTTTTCTTGGATTTTTTCAAGCTTTTCGAATGTTTTGAATTTTTTGAAAAAGCTTTTGAATACTTGGAATTTTCAAAATTTTTGGAATTTCTCGAAATTTCAGAAAGTTTAAAAAAATGTAATTTTTTGTGAGATCTGAAATTTTGAACCAATTTGAAACAATTTCGGTTTCGAAATATCCACAATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>441 173 82 62 51 43 41 38 23 16 9 7 5 4 3 2</canonical_bands>
                <polymorphic_bands>523 173 62 51 43 41 38 23 16 9 7 5 4 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACACATCATTTTCGTTCTG</pcr_primer_p1>
		<pcr_primer_p2>ATTTCCAATATTTCCGAACTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAACACATCATTTTCGTTCTGGATTTCGGGAGATTTGTCAAGGATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATGTGTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTACATCAGAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAAT</canonical_amplicon>
		<polymorphic_amplicon>GAACACATCATTTTCGTTCTGGATTTCGGGAGATTTGTCAAGGATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATGKGTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTACATCAGAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22839</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>102119</contig_pos>
        <strand>+</strand>
        <context>CAATTTTTTA[A/C]CGTTTCATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCATTTTTCTTGTAGAACTCCAAAAAATTAAACGAAACTGCAATTTTTTA</left_flank>
        <right_flank>CGTTTCATAAATTTCAGAAATTGCACAAAATTGTTCTCTAAATATTATTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCTCATCAACTATAAGTCATACTTTTACTTCTAGGGTTTTTTCTTATCAACCAAAAAAACCCAGGTAATCCTTTTGGGATTTTTTTGGTGGTCTTTGTTGTGTAGTTTTAAAGTAAAGAGGATCAATTTATGACAAATCAGTAATTCTGGAAATCTCAAATCTAAAATCAATTTCCTGAAACTGTGAAATATTTTACGAACTTCGAAAAGAGTTCTAAAACATTTCAAAACAAAAGTTTTGGTTTGTTTCCGACGGCTCATCGGCGGCTCATTGGCGACCGACAACGATCCCGATCCTTCCAAAAATGTCCATCTAATTTTATAGTCATTAATGAAATTTTCAAGTTTTTTTTCCAGAAGATGAATCAATATGAATCAGAATTTTTGGAAAATCTCAAATCTAAACCGGAGAAAAGGTTCTCAAATACTTCAAAACAAGAATTTCGGTTCATTTTTCTTGTAGAACTCCAAAAAATTAAACGAAACTGCAATTTTTTAACGTTTCATAAATTTCAGAAATTGCACAAAATTGTTCTCTAAATATTATTCGCTTCATCTGTGATATTTCAACATCAAAAAATGGAAGAACGGCTCACCGGCGGCCCACCGGCGGCCGACCACGGTCCCAACTCTTTCCCCCACAATTTTACTTAGAAATATAACATCATTTTCTATCATTTCCTCCAACACTGTCCTTCTAATTTTATAGTCATTAATGACAAATGCAATGTATAAAGGAAACCCATAAAACTTTTCCTCTCCCTCAAATTTCACAAAATTTTCTTATATATTTCTATTTCCCTTTTGAACAATCTATGTATACAAATGTTTGCTTACATACCCATACATACATACAAATTCACTATCCACCGCCCGAAGGAAATGATAAGCAATTGGCGGGGGGTAAACAGAAAAATGAAGGAGAGAGAAAGAGGAAAATGTTGCCAAAAAGCCCTAATAAAAGAAAAACCTTTGAACTTACGATGTTGCTGAGCTTGA</canonical>
            <polymorphic>GTCTCATCAACTATAAGTCATACTTTTACTTCTAGGGTTTTTTCTTATCAACCAAAAAAACCCAGGTAATCCTTTTGGGATTTTTTTGGTGGTCTTTGTTGTGTAGTTTTAAAGTAAAGAGGATCAATTTATGACAAATCAGTAATTCTGGAAATCTCAAATCTAAAATCAATTTCCTGAAACTGTGAAATATTTTACGAACTTCGAAAAGAGTTCTAAAACATTTCAAAACAAAAGTTTTGGTTTGTTTCCGACGGCTCATCGGCGGCTCATTGGCGACCGACAACGATCCCGATCCTTCCAAAAATGTCCATCTAATTTTATAGTCATTAATGAAATTTTCAAGTTTTTTTTCCAGAAGATGAATCAATATGAATCAGAATTTTTGGAAAATCTCAAATCTAAACCGGAGAAAAGGTTCTCAAATACTTCAAAACAAGAATTTCGGTTCATTTTTCTTGTAGAACTCCAAAAAATTAAACGAAACTGCAATTTTTTAMCGTTTCATAAATTTCAGAAATTGCACAAAATTGTTCTCTAAATATTATTCGCTTCATCTGTGATATTTCAACATCAAAAAATGGAAGAACGGCTCACCGGCGGCCCACCGGCGGCCGACCACGGTCCCAACTCTTTCCCCCACAATTTTACTTAGAAATATAACATCATTTTCTATCATTTCCTCCAACACTGTCCTTCTAATTTTATAGTCATTAATGACAAATGCAATGTATAAAGGAAACCCATAAAACTTTTCCTCTCCCTCAAATTTCACAAAATTTTCTTATATATTTCTATTTCCCTTTTGAACAATCTATGTATACAAATGTTTGCTTACATACCCATACATACATACAAATTCACTATCCACCGCCCGAAGGAAATGATAAGCAATTGGCGGGGGGTAAACAGAAAAATGAAGGAGAGAGAAAGAGGAAAATGTTGCCAAAAAGCCCTAATAAAAGAAAAACCTTTGAACTTACGATGTTGCTGAGCTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>286 221 217 147 109 20</canonical_bands>
                <polymorphic_bands>286 237 221 147 109</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCGGTTCATTTTTCTTGTA</pcr_primer_p1>
		<pcr_primer_p2>GTGTTGGAGGAAATGATAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTCGGTTCATTTTTCTTGTAGAACTCCAAAAAATTAAACGAAACTGCAATTTTTTAACGTTTCATAAATTTCAGAAATTGCACAAAATTGTTCTCTAAATATTATTCGCTTCATCTGTGATATTTCAACATCAAAAAATGGAAGAACGGCTCACCGGCGGCCCACCGGCGGCCGACCACGGTCCCAACTCTTTCCCCCACAATTTTACTTAGAAATATAACATCATTTTCTATCATTTCCTCCAACAC</canonical_amplicon>
		<polymorphic_amplicon>ATTTCGGTTCATTTTTCTTGTAGAACTCCAAAAAATTAAACGAAACTGCAATTTTTTAMCGTTTCATAAATTTCAGAAATTGCACAAAATTGTTCTCTAAATATTATTCGCTTCATCTGTGATATTTCAACATCAAAAAATGGAAGAACGGCTCACCGGCGGCCCACCGGCGGCCGACCACGGTCCCAACTCTTTCCCCCACAATTTTACTTAGAAATATAACATCATTTTCTATCATTTCCTCCAACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22840</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>102166</contig_pos>
        <strand>+</strand>
        <context>TCTAAATATT[A/T]TTCGCTTCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAACGTTTCATAAATTTCAGAAATTGCACAAAATTGTTCTCTAAATATT</left_flank>
        <right_flank>TTCGCTTCATCTGTGATATTTCAACATCAAAAAATGGAAGAACGGCTCAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAACCAAAAAAACCCAGGTAATCCTTTTGGGATTTTTTTGGTGGTCTTTGTTGTGTAGTTTTAAAGTAAAGAGGATCAATTTATGACAAATCAGTAATTCTGGAAATCTCAAATCTAAAATCAATTTCCTGAAACTGTGAAATATTTTACGAACTTCGAAAAGAGTTCTAAAACATTTCAAAACAAAAGTTTTGGTTTGTTTCCGACGGCTCATCGGCGGCTCATTGGCGACCGACAACGATCCCGATCCTTCCAAAAATGTCCATCTAATTTTATAGTCATTAATGAAATTTTCAAGTTTTTTTTCCAGAAGATGAATCAATATGAATCAGAATTTTTGGAAAATCTCAAATCTAAACCGGAGAAAAGGTTCTCAAATACTTCAAAACAAGAATTTCGGTTCATTTTTCTTGTAGAACTCCAAAAAATTAAACGAAACTGCAATTTTTTAACGTTTCATAAATTTCAGAAATTGCACAAAATTGTTCTCTAAATATTATTCGCTTCATCTGTGATATTTCAACATCAAAAAATGGAAGAACGGCTCACCGGCGGCCCACCGGCGGCCGACCACGGTCCCAACTCTTTCCCCCACAATTTTACTTAGAAATATAACATCATTTTCTATCATTTCCTCCAACACTGTCCTTCTAATTTTATAGTCATTAATGACAAATGCAATGTATAAAGGAAACCCATAAAACTTTTCCTCTCCCTCAAATTTCACAAAATTTTCTTATATATTTCTATTTCCCTTTTGAACAATCTATGTATACAAATGTTTGCTTACATACCCATACATACATACAAATTCACTATCCACCGCCCGAAGGAAATGATAAGCAATTGGCGGGGGGTAAACAGAAAAATGAAGGAGAGAGAAAGAGGAAAATGTTGCCAAAAAGCCCTAATAAAAGAAAAACCTTTGAACTTACGATGTTGCTGAGCTTGAAGATGCGTCGGTGCGGCGATTCGTCGACCATTGCGTACACGACGGAA</canonical>
            <polymorphic>TCAACCAAAAAAACCCAGGTAATCCTTTTGGGATTTTTTTGGTGGTCTTTGTTGTGTAGTTTTAAAGTAAAGAGGATCAATTTATGACAAATCAGTAATTCTGGAAATCTCAAATCTAAAATCAATTTCCTGAAACTGTGAAATATTTTACGAACTTCGAAAAGAGTTCTAAAACATTTCAAAACAAAAGTTTTGGTTTGTTTCCGACGGCTCATCGGCGGCTCATTGGCGACCGACAACGATCCCGATCCTTCCAAAAATGTCCATCTAATTTTATAGTCATTAATGAAATTTTCAAGTTTTTTTTCCAGAAGATGAATCAATATGAATCAGAATTTTTGGAAAATCTCAAATCTAAACCGGAGAAAAGGTTCTCAAATACTTCAAAACAAGAATTTCGGTTCATTTTTCTTGTAGAACTCCAAAAAATTAAACGAAACTGCAATTTTTTAACGTTTCATAAATTTCAGAAATTGCACAAAATTGTTCTCTAAATATTWTTCGCTTCATCTGTGATATTTCAACATCAAAAAATGGAAGAACGGCTCACCGGCGGCCCACCGGCGGCCGACCACGGTCCCAACTCTTTCCCCCACAATTTTACTTAGAAATATAACATCATTTTCTATCATTTCCTCCAACACTGTCCTTCTAATTTTATAGTCATTAATGACAAATGCAATGTATAAAGGAAACCCATAAAACTTTTCCTCTCCCTCAAATTTCACAAAATTTTCTTATATATTTCTATTTCCCTTTTGAACAATCTATGTATACAAATGTTTGCTTACATACCCATACATACATACAAATTCACTATCCACCGCCCGAAGGAAATGATAAGCAATTGGCGGGGGGTAAACAGAAAAATGAAGGAGAGAGAAAGAGGAAAATGTTGCCAAAAAGCCCTAATAAAAGAAAAACCTTTGAACTTACGATGTTGCTGAGCTTGAAGATGCGTCGGTGCGGCGATTCGTCGACCATTGCGTACACGACGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCGGTTCATTTTTCTTGTA</pcr_primer_p1>
		<pcr_primer_p2>GTGTTGGAGGAAATGATAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTCGGTTCATTTTTCTTGTAGAACTCCAAAAAATTAAACGAAACTGCAATTTTTTAACGTTTCATAAATTTCAGAAATTGCACAAAATTGTTCTCTAAATATTATTCGCTTCATCTGTGATATTTCAACATCAAAAAATGGAAGAACGGCTCACCGGCGGCCCACCGGCGGCCGACCACGGTCCCAACTCTTTCCCCCACAATTTTACTTAGAAATATAACATCATTTTCTATCATTTCCTCCAACAC</canonical_amplicon>
		<polymorphic_amplicon>ATTTCGGTTCATTTTTCTTGTAGAACTCCAAAAAATTAAACGAAACTGCAATTTTTTAACGTTTCATAAATTTCAGAAATTGCACAAAATTGTTCTCTAAATATTWTTCGCTTCATCTGTGATATTTCAACATCAAAAAATGGAAGAACGGCTCACCGGCGGCCCACCGGCGGCCGACCACGGTCCCAACTCTTTCCCCCACAATTTTACTTAGAAATATAACATCATTTTCTATCATTTCCTCCAACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22841</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>102263</contig_pos>
        <strand>+</strand>
        <context>TTTCCCCCAC[A/T]ATTTTACTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCACCGGCGGCCCACCGGCGGCCGACCACGGTCCCAACTCTTTCCCCCAC</left_flank>
        <right_flank>ATTTTACTTAGAAATATAACATCATTTTCTATCATTTCCTCCAACACTGT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCTGGAAATCTCAAATCTAAAATCAATTTCCTGAAACTGTGAAATATTTTACGAACTTCGAAAAGAGTTCTAAAACATTTCAAAACAAAAGTTTTGGTTTGTTTCCGACGGCTCATCGGCGGCTCATTGGCGACCGACAACGATCCCGATCCTTCCAAAAATGTCCATCTAATTTTATAGTCATTAATGAAATTTTCAAGTTTTTTTTCCAGAAGATGAATCAATATGAATCAGAATTTTTGGAAAATCTCAAATCTAAACCGGAGAAAAGGTTCTCAAATACTTCAAAACAAGAATTTCGGTTCATTTTTCTTGTAGAACTCCAAAAAATTAAACGAAACTGCAATTTTTTAACGTTTCATAAATTTCAGAAATTGCACAAAATTGTTCTCTAAATATTATTCGCTTCATCTGTGATATTTCAACATCAAAAAATGGAAGAACGGCTCACCGGCGGCCCACCGGCGGCCGACCACGGTCCCAACTCTTTCCCCCACAATTTTACTTAGAAATATAACATCATTTTCTATCATTTCCTCCAACACTGTCCTTCTAATTTTATAGTCATTAATGACAAATGCAATGTATAAAGGAAACCCATAAAACTTTTCCTCTCCCTCAAATTTCACAAAATTTTCTTATATATTTCTATTTCCCTTTTGAACAATCTATGTATACAAATGTTTGCTTACATACCCATACATACATACAAATTCACTATCCACCGCCCGAAGGAAATGATAAGCAATTGGCGGGGGGTAAACAGAAAAATGAAGGAGAGAGAAAGAGGAAAATGTTGCCAAAAAGCCCTAATAAAAGAAAAACCTTTGAACTTACGATGTTGCTGAGCTTGAAGATGCGTCGGTGCGGCGATTCGTCGACCATTGCGTACACGACGGAACTGGCCGTGGATGTAGTTTTTGAGATCTTCGGCCACGTCCGTCGCGGAGACACGGATGCACTGAAAAAGTCAAGATTGGTTGAATTAGGTTAGATAA</canonical>
            <polymorphic>ATTCTGGAAATCTCAAATCTAAAATCAATTTCCTGAAACTGTGAAATATTTTACGAACTTCGAAAAGAGTTCTAAAACATTTCAAAACAAAAGTTTTGGTTTGTTTCCGACGGCTCATCGGCGGCTCATTGGCGACCGACAACGATCCCGATCCTTCCAAAAATGTCCATCTAATTTTATAGTCATTAATGAAATTTTCAAGTTTTTTTTCCAGAAGATGAATCAATATGAATCAGAATTTTTGGAAAATCTCAAATCTAAACCGGAGAAAAGGTTCTCAAATACTTCAAAACAAGAATTTCGGTTCATTTTTCTTGTAGAACTCCAAAAAATTAAACGAAACTGCAATTTTTTAACGTTTCATAAATTTCAGAAATTGCACAAAATTGTTCTCTAAATATTATTCGCTTCATCTGTGATATTTCAACATCAAAAAATGGAAGAACGGCTCACCGGCGGCCCACCGGCGGCCGACCACGGTCCCAACTCTTTCCCCCACWATTTTACTTAGAAATATAACATCATTTTCTATCATTTCCTCCAACACTGTCCTTCTAATTTTATAGTCATTAATGACAAATGCAATGTATAAAGGAAACCCATAAAACTTTTCCTCTCCCTCAAATTTCACAAAATTTTCTTATATATTTCTATTTCCCTTTTGAACAATCTATGTATACAAATGTTTGCTTACATACCCATACATACATACAAATTCACTATCCACCGCCCGAAGGAAATGATAAGCAATTGGCGGGGGGTAAACAGAAAAATGAAGGAGAGAGAAAGAGGAAAATGTTGCCAAAAAGCCCTAATAAAAGAAAAACCTTTGAACTTACGATGTTGCTGAGCTTGAAGATGCGTCGGTGCGGCGATTCGTCGACCATTGCGTACACGACGGAACTGGCCGTGGATGTAGTTTTTGAGATCTTCGGCCACGTCCGTCGCGGAGACACGGATGCACTGAAAAAGTCAAGATTGGTTGAATTAGGTTAGATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>237 146 115 80 67 60 57 44 35 34 26 20 19 16 15 10 10 9</canonical_bands>
                <polymorphic_bands>237 172 146 80 67 60 44 35 34 26 20 19 16 15 10 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTGCACAAAATTGTTCTCTA</pcr_primer_p1>
		<pcr_primer_p2>AAAAGTTTTATGGGTTTCCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AAATTGCACAAAATTGTTCTCTAAATATTATTCGCTTCATCTGTGATATTTCAACATCAAAAAATGGAAGAACGGCTCACCGGCGGCCCACCGGCGGCCGACCACGGTCCCAACTCTTTCCCCCACAATTTTACTTAGAAATATAACATCATTTTCTATCATTTCCTCCAACACTGTCCTTCTAATTTTATAGTCATTAATGACAAATGCAATGTATAAAGGAAACCCATAAAACTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAATTGCACAAAATTGTTCTCTAAATATTATTCGCTTCATCTGTGATATTTCAACATCAAAAAATGGAAGAACGGCTCACCGGCGGCCCACCGGCGGCCGACCACGGTCCCAACTCTTTCCCCCACWATTTTACTTAGAAATATAACATCATTTTCTATCATTTCCTCCAACACTGTCCTTCTAATTTTATAGTCATTAATGACAAATGCAATGTATAAAGGAAACCCATAAAACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22842</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>102415</contig_pos>
        <strand>+</strand>
        <context>TATATATTTC[C/T]ATTTCCCTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAAAACTTTTCCTCTCCCTCAAATTTCACAAAATTTTCTTATATATTTC</left_flank>
        <right_flank>ATTTCCCTTTTGAACAATCTATGTATACAAATGTTTGCTTACATACCCAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTCCAAAAATGTCCATCTAATTTTATAGTCATTAATGAAATTTTCAAGTTTTTTTTCCAGAAGATGAATCAATATGAATCAGAATTTTTGGAAAATCTCAAATCTAAACCGGAGAAAAGGTTCTCAAATACTTCAAAACAAGAATTTCGGTTCATTTTTCTTGTAGAACTCCAAAAAATTAAACGAAACTGCAATTTTTTAACGTTTCATAAATTTCAGAAATTGCACAAAATTGTTCTCTAAATATTATTCGCTTCATCTGTGATATTTCAACATCAAAAAATGGAAGAACGGCTCACCGGCGGCCCACCGGCGGCCGACCACGGTCCCAACTCTTTCCCCCACAATTTTACTTAGAAATATAACATCATTTTCTATCATTTCCTCCAACACTGTCCTTCTAATTTTATAGTCATTAATGACAAATGCAATGTATAAAGGAAACCCATAAAACTTTTCCTCTCCCTCAAATTTCACAAAATTTTCTTATATATTTCTATTTCCCTTTTGAACAATCTATGTATACAAATGTTTGCTTACATACCCATACATACATACAAATTCACTATCCACCGCCCGAAGGAAATGATAAGCAATTGGCGGGGGGTAAACAGAAAAATGAAGGAGAGAGAAAGAGGAAAATGTTGCCAAAAAGCCCTAATAAAAGAAAAACCTTTGAACTTACGATGTTGCTGAGCTTGAAGATGCGTCGGTGCGGCGATTCGTCGACCATTGCGTACACGACGGAACTGGCCGTGGATGTAGTTTTTGAGATCTTCGGCCACGTCCGTCGCGGAGACACGGATGCACTGAAAAAGTCAAGATTGGTTGAATTAGGTTAGATAAGTTTAAAGGGACATTATGGGTTTAAAGGACTACGGTTTTTTTTTGAACTGTGATTGCTTATTCAGAAAGTAGGTATAAATCCAGAAGACAAGTTTTGTTGGTCGGTAGCCGACTTCTTGGCAGCATAGCTCACGAATTTTCCAATAAGAAAT</canonical>
            <polymorphic>CCTTCCAAAAATGTCCATCTAATTTTATAGTCATTAATGAAATTTTCAAGTTTTTTTTCCAGAAGATGAATCAATATGAATCAGAATTTTTGGAAAATCTCAAATCTAAACCGGAGAAAAGGTTCTCAAATACTTCAAAACAAGAATTTCGGTTCATTTTTCTTGTAGAACTCCAAAAAATTAAACGAAACTGCAATTTTTTAACGTTTCATAAATTTCAGAAATTGCACAAAATTGTTCTCTAAATATTATTCGCTTCATCTGTGATATTTCAACATCAAAAAATGGAAGAACGGCTCACCGGCGGCCCACCGGCGGCCGACCACGGTCCCAACTCTTTCCCCCACAATTTTACTTAGAAATATAACATCATTTTCTATCATTTCCTCCAACACTGTCCTTCTAATTTTATAGTCATTAATGACAAATGCAATGTATAAAGGAAACCCATAAAACTTTTCCTCTCCCTCAAATTTCACAAAATTTTCTTATATATTTCYATTTCCCTTTTGAACAATCTATGTATACAAATGTTTGCTTACATACCCATACATACATACAAATTCACTATCCACCGCCCGAAGGAAATGATAAGCAATTGGCGGGGGGTAAACAGAAAAATGAAGGAGAGAGAAAGAGGAAAATGTTGCCAAAAAGCCCTAATAAAAGAAAAACCTTTGAACTTACGATGTTGCTGAGCTTGAAGATGCGTCGGTGCGGCGATTCGTCGACCATTGCGTACACGACGGAACTGGCCGTGGATGTAGTTTTTGAGATCTTCGGCCACGTCCGTCGCGGAGACACGGATGCACTGAAAAAGTCAAGATTGGTTGAATTAGGTTAGATAAGTTTAAAGGGACATTATGGGTTTAAAGGACTACGGTTTTTTTTTGAACTGTGATTGCTTATTCAGAAAGTAGGTATAAATCCAGAAGACAAGTTTTGTTGGTCGGTAGCCGACTTCTTGGCAGCATAGCTCACGAATTTTCCAATAAGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAACACTGTCCTTCTAATTT</pcr_primer_p1>
		<pcr_primer_p2>CTTTCTCTCTCCTTCATTTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCAACACTGTCCTTCTAATTTTATAGTCATTAATGACAAATGCAATGTATAAAGGAAACCCATAAAACTTTTCCTCTCCCTCAAATTTCACAAAATTTTCTTATATATTTCTATTTCCCTTTTGAACAATCTATGTATACAAATGTTTGCTTACATACCCATACATACATACAAATTCACTATCCACCGCCCGAAGGAAATGATAAGCAATTGGCGGGGGGTAAACAGAAAAATGAAGGAGAGAGAAAG</canonical_amplicon>
		<polymorphic_amplicon>TCCAACACTGTCCTTCTAATTTTATAGTCATTAATGACAAATGCAATGTATAAAGGAAACCCATAAAACTTTTCCTCTCCCTCAAATTTCACAAAATTTTCTTATATATTTCYATTTCCCTTTTGAACAATCTATGTATACAAATGTTTGCTTACATACCCATACATACATACAAATTCACTATCCACCGCCCGAAGGAAATGATAAGCAATTGGCGGGGGGTAAACAGAAAAATGAAGGAGAGAGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22843</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>102590</contig_pos>
        <strand>+</strand>
        <context>AAAAGAAAAA[C/T]CTTTGAWCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGAGAGAGAAAGAGGAAAATGTTGCCAAAAAGCCCTAATAAAAGAAAAA</left_flank>
        <right_flank>CTTTGAACTTACGATGTTGCTGAGCTTGAAGATGCGTCGGTGCGGCGATT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATTAAACGAAACTGCAATTTTTTAACGTTTCATAAATTTCAGAAATTGCACAAAATTGTTCTCTAAATATTATTCGCTTCATCTGTGATATTTCAACATCAAAAAATGGAAGAACGGCTCACCGGCGGCCCACCGGCGGCCGACCACGGTCCCAACTCTTTCCCCCACAATTTTACTTAGAAATATAACATCATTTTCTATCATTTCCTCCAACACTGTCCTTCTAATTTTATAGTCATTAATGACAAATGCAATGTATAAAGGAAACCCATAAAACTTTTCCTCTCCCTCAAATTTCACAAAATTTTCTTATATATTTCTATTTCCCTTTTGAACAATCTATGTATACAAATGTTTGCTTACATACCCATACATACATACAAATTCACTATCCACCGCCCGAAGGAAATGATAAGCAATTGGCGGGGGGTAAACAGAAAAATGAAGGAGAGAGAAAGAGGAAAATGTTGCCAAAAAGCCCTAATAAAAGAAAAACCTTTGAACTTACGATGTTGCTGAGCTTGAAGATGCGTCGGTGCGGCGATTCGTCGACCATTGCGTACACGACGGAACTGGCCGTGGATGTAGTTTTTGAGATCTTCGGCCACGTCCGTCGCGGAGACACGGATGCACTGAAAAAGTCAAGATTGGTTGAATTAGGTTAGATAAGTTTAAAGGGACATTATGGGTTTAAAGGACTACGGTTTTTTTTTGAACTGTGATTGCTTATTCAGAAAGTAGGTATAAATCCAGAAGACAAGTTTTGTTGGTCGGTAGCCGACTTCTTGGCAGCATAGCTCACGAATTTTCCAATAAGAAATTCAAACACTTGATACGTTTTAAGCGGTACTACAGTTTCCTGGTCTACTAACAACAGACACATGAAACAGAACTTACAGGTTAGTATGATTAGCTTTAACGGCATATAGCTGATCAACTTTAAGCCAATTTATCTCGGTTCATGTGAAAGATATTAAAAAGTGATTGACTAACACA</canonical>
            <polymorphic>AAAAATTAAACGAAACTGCAATTTTTTAACGTTTCATAAATTTCAGAAATTGCACAAAATTGTTCTCTAAATATTATTCGCTTCATCTGTGATATTTCAACATCAAAAAATGGAAGAACGGCTCACCGGCGGCCCACCGGCGGCCGACCACGGTCCCAACTCTTTCCCCCACAATTTTACTTAGAAATATAACATCATTTTCTATCATTTCCTCCAACACTGTCCTTCTAATTTTATAGTCATTAATGACAAATGCAATGTATAAAGGAAACCCATAAAACTTTTCCTCTCCCTCAAATTTCACAAAATTTTCTTATATATTTCTATTTCCCTTTTGAACAATCTATGTATACAAATGTTTGCTTACATACCCATACATACATACAAATTCACTATCCACCGCCCGAAGGAAATGATAAGCAATTGGCGGGGGGTAAACAGAAAAATGAAGGAGAGAGAAAGAGGAAAATGTTGCCAAAAAGCCCTAATAAAAGAAAAAYCTTTGAACTTACGATGTTGCTGAGCTTGAAGATGCGTCGGTGCGGCGATTCGTCGACCATTGCGTACACGACGGAACTGGCCGTGGATGTAGTTTTTGAGATCTTCGGCCACGTCCGTCGCGGAGACACGGATGCACTGAAAAAGTCAAGATTGGTTGAATTAGGTTAGATAAGTTTAAAGGGACATTATGGGTTTAAAGGACTACGGTTTTTTTTTGAACTGTGATTGCTTATTCAGAAAGTAGGTATAAATCCAGAAGACAAGTTTTGTTGGTCGGTAGCCGACTTCTTGGCAGCATAGCTCACGAATTTTCCAATAAGAAATTCAAACACTTGATACGTTTTAAGCGGTACTACAGTTTCCTGGTCTACTAACAACAGACACATGAAACAGAACTTACAGGTTAGTATGATTAGCTTTAACGGCATATAGCTGATCAACTTTAAGCCAATTTATCTCGGTTCATGTGAAAGATATTAAAAAGTGATTGACTAACACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGAAGGAGAGAGAAAGAG</pcr_primer_p1>
		<pcr_primer_p2>CCATAATGTCCCTTTAAACTTATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGAAGGAGAGAGAAAGAGGAAAATGTTGCCAAAAAGCCCTAATAAAAGAAAAACCTTTGAACTTACGATGTTGCTGAGCTTGAAGATGCGTCGGTGCGGCGATTCGTCGACCATTGCGTACACGACGGAACTGGCCGTGGATGTAGTTTTTGAGATCTTCGGCCACGTCCGTCGCGGAGACACGGATGCACTGAAAAAGTCAAGATTGGTTGAATTAGGTTAGATAAGTTTAAAGGGACATTATGG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGAAGGAGAGAGAAAGAGGAAAATGTTGCCAAAAAGCCCTAATAAAAGAAAAAYCTTTGAACTTACGATGTTGCTGAGCTTGAAGATGCGTCGGTGCGGCGATTCGTCGACCATTGCGTACACGACGGAACTGGCCGTGGATGTAGTTTTTGAGATCTTCGGCCACGTCCGTCGCGGAGACACGGATGCACTGAAAAAGTCAAGATTGGTTGAATTAGGTTAGATAAGTTTAAAGGGACATTATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22844</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>102597</contig_pos>
        <strand>+</strand>
        <context>AAAYCTTTGA[A/T]CTTACGATGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAAAGAGGAAAATGTTGCCAAAAAGCCCTAATAAAAGAAAAACCTTTGA</left_flank>
        <right_flank>CTTACGATGTTGCTGAGCTTGAAGATGCGTCGGTGCGGCGATTCGTCGAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACGAAACTGCAATTTTTTAACGTTTCATAAATTTCAGAAATTGCACAAAATTGTTCTCTAAATATTATTCGCTTCATCTGTGATATTTCAACATCAAAAAATGGAAGAACGGCTCACCGGCGGCCCACCGGCGGCCGACCACGGTCCCAACTCTTTCCCCCACAATTTTACTTAGAAATATAACATCATTTTCTATCATTTCCTCCAACACTGTCCTTCTAATTTTATAGTCATTAATGACAAATGCAATGTATAAAGGAAACCCATAAAACTTTTCCTCTCCCTCAAATTTCACAAAATTTTCTTATATATTTCTATTTCCCTTTTGAACAATCTATGTATACAAATGTTTGCTTACATACCCATACATACATACAAATTCACTATCCACCGCCCGAAGGAAATGATAAGCAATTGGCGGGGGGTAAACAGAAAAATGAAGGAGAGAGAAAGAGGAAAATGTTGCCAAAAAGCCCTAATAAAAGAAAAACCTTTGAACTTACGATGTTGCTGAGCTTGAAGATGCGTCGGTGCGGCGATTCGTCGACCATTGCGTACACGACGGAACTGGCCGTGGATGTAGTTTTTGAGATCTTCGGCCACGTCCGTCGCGGAGACACGGATGCACTGAAAAAGTCAAGATTGGTTGAATTAGGTTAGATAAGTTTAAAGGGACATTATGGGTTTAAAGGACTACGGTTTTTTTTTGAACTGTGATTGCTTATTCAGAAAGTAGGTATAAATCCAGAAGACAAGTTTTGTTGGTCGGTAGCCGACTTCTTGGCAGCATAGCTCACGAATTTTCCAATAAGAAATTCAAACACTTGATACGTTTTAAGCGGTACTACAGTTTCCTGGTCTACTAACAACAGACACATGAAACAGAACTTACAGGTTAGTATGATTAGCTTTAACGGCATATAGCTGATCAACTTTAAGCCAATTTATCTCGGTTCATGTGAAAGATATTAAAAAGTGATTGACTAACACAACAACTG</canonical>
            <polymorphic>AAACGAAACTGCAATTTTTTAACGTTTCATAAATTTCAGAAATTGCACAAAATTGTTCTCTAAATATTATTCGCTTCATCTGTGATATTTCAACATCAAAAAATGGAAGAACGGCTCACCGGCGGCCCACCGGCGGCCGACCACGGTCCCAACTCTTTCCCCCACAATTTTACTTAGAAATATAACATCATTTTCTATCATTTCCTCCAACACTGTCCTTCTAATTTTATAGTCATTAATGACAAATGCAATGTATAAAGGAAACCCATAAAACTTTTCCTCTCCCTCAAATTTCACAAAATTTTCTTATATATTTCTATTTCCCTTTTGAACAATCTATGTATACAAATGTTTGCTTACATACCCATACATACATACAAATTCACTATCCACCGCCCGAAGGAAATGATAAGCAATTGGCGGGGGGTAAACAGAAAAATGAAGGAGAGAGAAAGAGGAAAATGTTGCCAAAAAGCCCTAATAAAAGAAAAACCTTTGAWCTTACGATGTTGCTGAGCTTGAAGATGCGTCGGTGCGGCGATTCGTCGACCATTGCGTACACGACGGAACTGGCCGTGGATGTAGTTTTTGAGATCTTCGGCCACGTCCGTCGCGGAGACACGGATGCACTGAAAAAGTCAAGATTGGTTGAATTAGGTTAGATAAGTTTAAAGGGACATTATGGGTTTAAAGGACTACGGTTTTTTTTTGAACTGTGATTGCTTATTCAGAAAGTAGGTATAAATCCAGAAGACAAGTTTTGTTGGTCGGTAGCCGACTTCTTGGCAGCATAGCTCACGAATTTTCCAATAAGAAATTCAAACACTTGATACGTTTTAAGCGGTACTACAGTTTCCTGGTCTACTAACAACAGACACATGAAACAGAACTTACAGGTTAGTATGATTAGCTTTAACGGCATATAGCTGATCAACTTTAAGCCAATTTATCTCGGTTCATGTGAAAGATATTAAAAAGTGATTGACTAACACAACAACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGAAGGAGAGAGAAAGAG</pcr_primer_p1>
		<pcr_primer_p2>CCATAATGTCCCTTTAAACTTATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGAAGGAGAGAGAAAGAGGAAAATGTTGCCAAAAAGCCCTAATAAAAGAAAAACCTTTGAACTTACGATGTTGCTGAGCTTGAAGATGCGTCGGTGCGGCGATTCGTCGACCATTGCGTACACGACGGAACTGGCCGTGGATGTAGTTTTTGAGATCTTCGGCCACGTCCGTCGCGGAGACACGGATGCACTGAAAAAGTCAAGATTGGTTGAATTAGGTTAGATAAGTTTAAAGGGACATTATGG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGAAGGAGAGAGAAAGAGGAAAATGTTGCCAAAAAGCCCTAATAAAAGAAAAACCTTTGAWCTTACGATGTTGCTGAGCTTGAAGATGCGTCGGTGCGGCGATTCGTCGACCATTGCGTACACGACGGAACTGGCCGTGGATGTAGTTTTTGAGATCTTCGGCCACGTCCGTCGCGGAGACACGGATGCACTGAAAAAGTCAAGATTGGTTGAATTAGGTTAGATAAGTTTAAAGGGACATTATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22845</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>124962</contig_pos>
        <strand>+</strand>
        <context>TATATGGATT[C/T]CTAACCGAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCAAGCCGTGTGTAGAAAGTTTAATGTTAATAATTTTATGTATATGGATT</left_flank>
        <right_flank>CTAACCGAAGTGGAACAGGGTTTTTTTAAACAAAAAATCCAGCAGTAGAA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTTTACCACACACCACCTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGCAGAAGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGATAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGAACTCCTAACCAATTACTAACCGTTAGAAAATCGTTGAGAAAAATAAGTCCTCGAAACGGAAAAATGTATTAAATGAGTTTTTTCTCAGTTTCAGCCATATTGAATATTTTGAAATTGTTCTCCTAAATTCAATGAGTTTAACTGATTTGTGCAAGCCGTGTGTAGAAAGTTTAATGTTAATAATTTTATGTATATGGATTTCTAACCGAAGTGGAACAGGGTTTTTTTAAACAAAAAATCCAGCAGTAGAACTAAATTTTGGGTAGTTTCTGGATGATTTCGAAAAATTCAGGGTTTCACAAAAATATTATACATAACTGATCAGTGATTTCTTTTTCAATTCAGAGCTCTATAAAATGGCCAAACATCTAAAGCAACGAAATTCTTTTAACGAAATTCTGAAATTTGTGGAATCGAAAATCAAACGAAATTAATATCAGGACCAGACTTGTTCAAATCGGGAAATCGGGATTCCCGTTTTCCCGGTTTTCCCGGAAATTTTTGGGAATTTTTCCCGACAGGAATTTTCCCGAATTTTTTTTCGGGAATTTTTCCCGACGGGAAGTCTGGGGGTTTTGGGATCTTTTGAGAAACTTGAAGAAATCGACAAATCTCAACATAACTTGAGAAAAACAGGTAAAATTCACTGAAAAACCAACTTCCCGATTTTTCCCGATTTTCCCGGAAATTCCCGAATAAAA</canonical>
            <polymorphic>AATTTTTTACCACACACCACCTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGCAGAAGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGATAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGAACTCCTAACCAATTACTAACCGTTAGAAAATCGTTGAGAAAAATAAGTCCTCGAAACGGAAAAATGTATTAAATGAGTTTTTTCTCAGTTTCAGCCATATTGAATATTTTGAAATTGTTCTCCTAAATTCAATGAGTTTAACTGATTTGTGCAAGCCGTGTGTAGAAAGTTTAATGTTAATAATTTTATGTATATGGATTYCTAACCGAAGTGGAACAGGGTTTTTTTAAACAAAAAATCCAGCAGTAGAACTAAATTTTGGGTAGTTTCTGGATGATTTCGAAAAATTCAGGGTTTCACAAAAATATTATACATAACTGATCAGTGATTTCTTTTTCAATTCAGAGCTCTATAAAATGGCCAAACATCTAAAGCAACGAAATTCTTTTAACGAAATTCTGAAATTTGTGGAATCGAAAATCAAACGAAATTAATATCAGGACCAGACTTGTTCAAATCGGGAAATCGGGATTCCCGTTTTCCCGGTTTTCCCGGAAATTTTTGGGAATTTTTCCCGACAGGAATTTTCCCGAATTTTTTTTCGGGAATTTTTCCCGACGGGAAGTCTGGGGGTTTTGGGATCTTTTGAGAAACTTGAAGAAATCGACAAATCTCAACATAACTTGAGAAAAACAGGTAAAATTCACTGAAAAACCAACTTCCCGATTTTTCCCGATTTTCCCGGAAATTCCCGAATAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATTTTGAAATTGTTCTCCTAAA</pcr_primer_p1>
		<pcr_primer_p2>TAGAGCTCTGAATTGAAAAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATATTTTGAAATTGTTCTCCTAAATTCAATGAGTTTAACTGATTTGTGCAAGCCGTGTGTAGAAAGTTTAATGTTAATAATTTTATGTATATGGATTTCTAACCGAAGTGGAACAGGGTTTTTTTAAACAAAAAATCCAGCAGTAGAACTAAATTTTGGGTAGTTTCTGGATGATTTCGAAAAATTCAGGGTTTCACAAAAATATTATACATAACTGATCAGTGATTTCTTTTTCAATTCAGAGCTCTA</canonical_amplicon>
		<polymorphic_amplicon>AATATTTTGAAATTGTTCTCCTAAATTCAATGAGTTTAACTGATTTGTGCAAGCCGTGTGTAGAAAGTTTAATGTTAATAATTTTATGTATATGGATTYCTAACCGAAGTGGAACAGGGTTTTTTTAAACAAAAAATCCAGCAGTAGAACTAAATTTTGGGTAGTTTCTGGATGATTTCGAAAAATTCAGGGTTTCACAAAAATATTATACATAACTGATCAGTGATTTCTTTTTCAATTCAGAGCTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22848</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>73359</contig_pos>
        <strand>+</strand>
        <context>AAGTAAAGTG[C/T]GCCAATTACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTATTCGGTTTCGTGTTGTAGTCGCCTGCCTTGTGGAAAAGTAAAGTG</left_flank>
        <right_flank>GCCAATTACATTACTCCGAGGCAGTGTGCCTTATCGACAAACGCACTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAAAAGAAGAAGGCTAATGTACGGAAGGAAGTGAAGCCACCTAGAATTAGCGACGAATGGGCGAATAAGCTTCATGTCTGGCACGGACAAGTCGAGGCGACAGATAAACAGCTTAAAAAGCTGACAAGTCAGATAAAACTCGAAGAGGTAGATGAAGACGAACATTAGAATGATCATGTCAAGATCCCTTTGTACTTTGGAAATAAGTTAATAATTTATTCAAGTATTATCTAATAATAAATTTTTTATTCATAACCACTAATCGGCTTGTCTTTTCTTTTTCTGTCTGGTTGAAAATTTCCCGATTTGGTTTTTTTGTGAATCTTAATTCCCTCCCTGAGATGATCTGGGTGCAAGTTCAAATTATCAGCGTTGATGCATTTTCGCGAGAAGACCAAACGAAATGGCCTGATATCGTGCAATACACGCCGATTTCACTTGGTTATCATCTATTCGGTTTCGTGTTGTAGTCGCCTGCCTTGTGGAAAAGTAAAGTGTGCCAATTACATTACTCCGAGGCAGTGTGCCTTATCGACAAACGCACTTTTCGACAAATTTACCGGTAAATTTATCGGAAAATTACCAACAAATTACCGACAAATTGTCGATAAAAACAACATTTATCGACAATTTGTCGATAAATTTGTCAATAAAAATGCTGTTTGTCGACAATTTATCGACAAATTGTCGACCAAAATTGCTATTAACCGCCGGAATCAAGTACTTGTGAAAATCGTATCTAAGGCTTCCATTCGGTCGGGAAATTTAGCCGACCGACCGACCACCGACCCCGCCGACCGACAGCCGACCGAACTGACCGATCGGTCGGCGCACCGACCGTTTTCATGCATTTGCGCGTCAACATGTTTGCATACGCTGCATTGTATTTTACGACAAACTACTCACTAAAAGCCTCGTTTGTCATAAAATAAAGTGCTTCGTACGCAAAAATTCGTGTTTTTATGCGCAAAGGCACGAAATCGGTTAGCTCGGTCGGC</canonical>
            <polymorphic>CTGAAAAGAAGAAGGCTAATGTACGGAAGGAAGTGAAGCCACCTAGAATTAGCGACGAATGGGCGAATAAGCTTCATGTCTGGCACGGACAAGTCGAGGCGACAGATAAACAGCTTAAAAAGCTGACAAGTCAGATAAAACTCGAAGAGGTAGATGAAGACGAACATTAGAATGATCATGTCAAGATCCCTTTGTACTTTGGAAATAAGTTAATAATTTATTCAAGTATTATCTAATAATAAATTTTTTATTCATAACCACTAATCGGCTTGTCTTTTCTTTTTCTGTCTGGTTGAAAATTTCCCGATTTGGTTTTTTTGTGAATCTTAATTCCCTCCCTGAGATGATCTGGGTGCAAGTTCAAATTATCAGCGTTGATGCATTTTCGCGAGAAGACCAAACGAAATGGCCTGATATCGTGCAATACACGCCGATTTCACTTGGTTATCATCTATTCGGTTTCGTGTTGTAGTCGCCTGCCTTGTGGAAAAGTAAAGTGYGCCAATTACATTACTCCGAGGCAGTGTGCCTTATCGACAAACGCACTTTTCGACAAATTTACCGGTAAATTTATCGGAAAATTACCAACAAATTACCGACAAATTGTCGATAAAAACAACATTTATCGACAATTTGTCGATAAATTTGTCAATAAAAATGCTGTTTGTCGACAATTTATCGACAAATTGTCGACCAAAATTGCTATTAACCGCCGGAATCAAGTACTTGTGAAAATCGTATCTAAGGCTTCCATTCGGTCGGGAAATTTAGCCGACCGACCGACCACCGACCCCGCCGACCGACAGCCGACCGAACTGACCGATCGGTCGGCGCACCGACCGTTTTCATGCATTTGCGCGTCAACATGTTTGCATACGCTGCATTGTATTTTACGACAAACTACTCACTAAAAGCCTCGTTTGTCATAAAATAAAGTGCTTCGTACGCAAAAATTCGTGTTTTTATGCGCAAAGGCACGAAATCGGTTAGCTCGGTCGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>186 175 72 66 62 55 49 44 35 33 31 27 25 23 21 20 18 17 13 11 7 6 2 2</canonical_bands>
                <polymorphic_bands>186 175 72 66 62 55 49 44 35 33 31 27 27 23 21 20 18 17 13 11 7 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTATTCGGTTTCGTGTTGT</pcr_primer_p1>
		<pcr_primer_p2>GAGTAGTTTGTCGTAAAATACAATG</pcr_primer_p2>
		<pcr_amplicon_size>456</pcr_amplicon_size>
		<canonical_amplicon>TCTATTCGGTTTCGTGTTGTAGTCGCCTGCCTTGTGGAAAAGTAAAGTGTGCCAATTACATTACTCCGAGGCAGTGTGCCTTATCGACAAACGCACTTTTCGACAAATTTACCGGTAAATTTATCGGAAAATTACCAACAAATTACCGACAAATTGTCGATAAAAACAACATTTATCGACAATTTGTCGATAAATTTGTCAATAAAAATGCTGTTTGTCGACAATTTATCGACAAATTGTCGACCAAAATTGCTATTAACCGCCGGAATCAAGTACTTGTGAAAATCGTATCTAAGGCTTCCATTCGGTCGGGAAATTTAGCCGACCGACCGACCACCGACCCCGCCGACCGACAGCCGACCGAACTGACCGATCGGTCGGCGCACCGACCGTTTTCATGCATTTGCGCGTCAACATGTTTGCATACGCTGCATTGTATTTTACGACAAACTACTC</canonical_amplicon>
		<polymorphic_amplicon>TCTATTCGGTTTCGTGTTGTAGTCGCCTGCCTTGTGGAAAAGTAAAGTGYGCCAATTACATTACTCCGAGGCAGTGTGCCTTATCGACAAACGCACTTTTCGACAAATTTACCGGTAAATTTATCGGAAAATTACCAACAAATTACCGACAAATTGTCGATAAAAACAACATTTATCGACAATTTGTCGATAAATTTGTCAATAAAAATGCTGTTTGTCGACAATTTATCGACAAATTGTCGACCAAAATTGCTATTAACCGCCGGAATCAAGTACTTGTGAAAATCGTATCTAAGGCTTCCATTCGGTCGGGAAATTTAGCCGACCGACCGACCACCGACCCCGCCGACCGACAGCCGACCGAACTGACCGATCGGTCGGCGCACCGACCGTTTTCATGCATTTGCGCGTCAACATGTTTGCATACGCTGCATTGTATTTTACGACAAACTACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22927</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>91941</contig_pos>
        <strand>+</strand>
        <context>TTTTTATTTT[A/C]TCTTTTCTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATTAATATTAATACAAGTTATCACATTTGCATTTCTCAGTTTTTATTTT</left_flank>
        <right_flank>TCTTTTCTCTCGAGAAGAGCAAAATGTCCCAAGCTACTCGGAACTTACAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGTTAAAAAGGAATTCTGAAATTTCGAAACTTTTTTTCAAGTTTGGGAAACCCGAGCCCGCCAGGCCTTGATTTTTCAATTATACAGGAAATATGGAATTTTACAAGTTTAGGTCTCGGATCTGCCGTCGTGATGATTTTTGAGAATCGTTTCAATGCTATATCTCCGCCTCACTTTCGATTTAAAATCCATAGAAGACGAGCATATCATTCAATTATGTTTGTAGTCAGTTTTTGTCTACTAATATCCTCTTTTCTGAAACTTGAAGATCAGAAAACTGCAAAGCAATATTATTCCGAGGTTTATTCCCAAATCAAGATCATTAAAAAAACAATAAAAAAATATTTCAGTACTTCTGTGTCCGATTCCTCAATTCTTCACAACTGCATTCTCATTTAAACCAGTTTTAGTTCCACTTCTTATCTCAACTGTTCTTCTATTTTCTTTATTAATATTAATACAAGTTATCACATTTGCATTTCTCAGTTTTTATTTTCTCTTTTCTCTCGAGAAGAGCAAAATGTCCCAAGCTACTCGGAACTTACAAAAGAAATTCTTTCTCACTGCGTGGTTACAGGTGAAAAAGTTTTTTTAGAAAGCTAGGAAATGTGATAACTCGAAAATGTGAATTTCAGATTTTGACCCATCTTGCTGTTATCGTAATTCCCATGGGATATACATTTTTCTCATTTTTATTGAGATACCGGAATCAGAGTTAGTTTCGAACAAACACCGTAAAACCTGTAATAGAAGGGCCCCTTAACTTTAACTTTAATCCAATTTATCTCGATTCATGTGAAAGATATGAAACTGTGTTCAACTGATGAATTGATTATCATAATATCAAAAACATTTTCCCAGTTGACACATTTTTTATTTCTCGCATAGGAGCCGAGAAAAATCCGCTCTAACTTGACCGCGTGGGTGCCCTTCTATTACAGGTTTTATTGTAAATGTTTCACAAAATGTTCTTTTTCAGTTCTTGTTAATCTGTCTA</canonical>
            <polymorphic>AAAAGTTAAAAAGGAATTCTGAAATTTCGAAACTTTTTTTCAAGTTTGGGAAACCCGAGCCCGCCAGGCCTTGATTTTTCAATTATACAGGAAATATGGAATTTTACAAGTTTAGGTCTCGGATCTGCCGTCGTGATGATTTTTGAGAATCGTTTCAATGCTATATCTCCGCCTCACTTTCGATTTAAAATCCATAGAAGACGAGCATATCATTCAATTATGTTTGTAGTCAGTTTTTGTCTACTAATATCCTCTTTTCTGAAACTTGAAGATCAGAAAACTGCAAAGCAATATTATTCCGAGGTTTATTCCCAAATCAAGATCATTAAAAAAACAATAAAAAAATATTTCAGTACTTCTGTGTCCGATTCCTCAATTCTTCACAACTGCATTCTCATTTAAACCAGTTTTAGTTCCACTTCTTATCTCAACTGTTCTTCTATTTTCTTTATTAATATTAATACAAGTTATCACATTTGCATTTCTCAGTTTTTATTTTMTCTTTTCTCTCGAGAAGAGCAAAATGTCCCAAGCTACTCGGAACTTACAAAAGAAATTCTTTCTCACTGCGTGGTTACAGGTGAAAAAGTTTTTTTAGAAAGCTAGGAAATGTGATAACTCGAAAATGTGAATTTCAGATTTTGACCCATCTTGCTGTTATCGTAATTCCCATGGGATATACATTTTTCTCATTTTTATTGAGATACCGGAATCAGAGTTAGTTTCGAACAAACACCGTAAAACCTGTAATAGAAGGGCCCCTTAACTTTAACTTTAATCCAATTTATCTCGATTCATGTGAAAGATATGAAACTGTGTTCAACTGATGAATTGATTATCATAATATCAAAAACATTTTCCCAGTTGACACATTTTTTATTTCTCGCATAGGAGCCGAGAAAAATCCGCTCTAACTTGACCGCGTGGGTGCCCTTCTATTACAGGTTTTATTGTAAATGTTTCACAAAATGTTCTTTTTCAGTTCTTGTTAATCTGTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCACAACTGCATTCTCATTTA</pcr_primer_p1>
		<pcr_primer_p2>ACATTTTCGAGTTATCACATTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCACAACTGCATTCTCATTTAAACCAGTTTTAGTTCCACTTCTTATCTCAACTGTTCTTCTATTTTCTTTATTAATATTAATACAAGTTATCACATTTGCATTTCTCAGTTTTTATTTTCTCTTTTCTCTCGAGAAGAGCAAAATGTCCCAAGCTACTCGGAACTTACAAAAGAAATTCTTTCTCACTGCGTGGTTACAGGTGAAAAAGTTTTTTTAGAAAGCTAGGAAATGTGATAACTCGAAAATGT</canonical_amplicon>
		<polymorphic_amplicon>TTCACAACTGCATTCTCATTTAAACCAGTTTTAGTTCCACTTCTTATCTCAACTGTTCTTCTATTTTCTTTATTAATATTAATACAAGTTATCACATTTGCATTTCTCAGTTTTTATTTTMTCTTTTCTCTCGAGAAGAGCAAAATGTCCCAAGCTACTCGGAACTTACAAAAGAAATTCTTTCTCACTGCGTGGTTACAGGTGAAAAAGTTTTTTTAGAAAGCTAGGAAATGTGATAACTCGAAAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22928</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>94837</contig_pos>
        <strand>+</strand>
        <context>TCCTTCTTCC[C/T]TCTCACTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCTTCC</left_flank>
        <right_flank>TCTCACTCTTCTATTTCCCTCCGATGCGTCTGCTTGTATTCTCCCTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGTAATTAAATGGCTCCCGAACTGTCAACTTCTCGTGTGCTGTAAATCAGGTGTAAAAGTGATTAAGTGGAAAAGTTAATAAAAATATTTTCAAAATTTAAAATTTTTTTCAAAAATCCTCCTACAGTAACCGAGGCGAAGGAGGTCCTCCGACTGCTAACCAAAATATTATATTACGGTCCAGTCTTGTTTCCTTTCTTGGTTTATCGCATCTACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCTTCCTTCTCACTCTTCTATTTCCCTCCGATGCGTCTGCTTGTATTCTCCCTTTTTCTATTGCTACCTGAATTGGCTCGGGGATTCGAGTCTTTGGACCTTTCCGAGTACAATCATCTTTCCTCGAATACCATCATTGACTTCTATGACAATGAAATCCCGGACATTGATTTTGAATCGGAACTTCGTCGTTTCCAAGAACCAATACCAAAAACTGGAGCTGAAATGATGGCCAGATTCAACAGGAATTTTTTGAATTTCCTATCGAAAGGCGAAAGAAAGGATTGGAATAATTTGATGCAAATCATGTCGCCGGATGCGTATATTGAGACTTGTATGGCATCGGCTTATGGATTGAGTCTGGATCAGTTTTATAAATGGATGACCTACTTGAGCAAGTTCTATTTGGAAGTTGGGGTAAACATCCTAATCATCTATAATATAAAAAAATGAGAAGATACATTTCAGTTGACTAGCACGGTCATAACAGACAGCTCCGATGATATC</canonical>
            <polymorphic>AAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGTAATTAAATGGCTCCCGAACTGTCAACTTCTCGTGTGCTGTAAATCAGGTGTAAAAGTGATTAAGTGGAAAAGTTAATAAAAATATTTTCAAAATTTAAAATTTTTTTCAAAAATCCTCCTACAGTAACCGAGGCGAAGGAGGTCCTCCGACTGCTAACCAAAATATTATATTACGGTCCAGTCTTGTTTCCTTTCTTGGTTTATCGCATCTACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCTTCCYTCTCACTCTTCTATTTCCCTCCGATGCGTCTGCTTGTATTCTCCCTTTTTCTATTGCTACCTGAATTGGCTCGGGGATTCGAGTCTTTGGACCTTTCCGAGTACAATCATCTTTCCTCGAATACCATCATTGACTTCTATGACAATGAAATCCCGGACATTGATTTTGAATCGGAACTTCGTCGTTTCCAAGAACCAATACCAAAAACTGGAGCTGAAATGATGGCCAGATTCAACAGGAATTTTTTGAATTTCCTATCGAAAGGCGAAAGAAAGGATTGGAATAATTTGATGCAAATCATGTCGCCGGATGCGTATATTGAGACTTGTATGGCATCGGCTTATGGATTGAGTCTGGATCAGTTTTATAAATGGATGACCTACTTGAGCAAGTTCTATTTGGAAGTTGGGGTAAACATCCTAATCATCTATAATATAAAAAAATGAGAAGATACATTTCAGTTGACTAGCACGGTCATAACAGACAGCTCCGATGATATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACCGTATCTAGAAACTTTTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTAGCAATAGAAAAAGGGAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCTTCCTTCTCACTCTTCTATTTCCCTCCGATGCGTCTGCTTGTATTCTCCCTTTTTCTATTGCTAC</canonical_amplicon>
		<polymorphic_amplicon>TACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCTTCCYTCTCACTCTTCTATTTCCCTCCGATGCGTCTGCTTGTATTCTCCCTTTTTCTATTGCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22929</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>94783</contig_pos>
        <strand>+</strand>
        <context>AWCGTCTTAA[A/T]CGAATCAGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAA</left_flank>
        <right_flank>CGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGACTTGTGATAAAATGAAAATGTTATTTGCATTGGTTTCTGATTTTTAAAAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGTAATTAAATGGCTCCCGAACTGTCAACTTCTCGTGTGCTGTAAATCAGGTGTAAAAGTGATTAAGTGGAAAAGTTAATAAAAATATTTTCAAAATTTAAAATTTTTTTCAAAAATCCTCCTACAGTAACCGAGGCGAAGGAGGTCCTCCGACTGCTAACCAAAATATTATATTACGGTCCAGTCTTGTTTCCTTTCTTGGTTTATCGCATCTACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCTTCCTTCTCACTCTTCTATTTCCCTCCGATGCGTCTGCTTGTATTCTCCCTTTTTCTATTGCTACCTGAATTGGCTCGGGGATTCGAGTCTTTGGACCTTTCCGAGTACAATCATCTTTCCTCGAATACCATCATTGACTTCTATGACAATGAAATCCCGGACATTGATTTTGAATCGGAACTTCGTCGTTTCCAAGAACCAATACCAAAAACTGGAGCTGAAATGATGGCCAGATTCAACAGGAATTTTTTGAATTTCCTATCGAAAGGCGAAAGAAAGGATTGGAATAATTTGATGCAAATCATGTCGCCGGATGCGTATATTGAGACTTGTATGGCATCGGCTTATGGATTGAGTCTGGATCAGTTTTATAAATGGATGACCTACTTGAGCAAGTTCTATTTGGAAGTTGGGGTAAACATCCTAATCATCTATAATATAAAAAAATGA</canonical>
            <polymorphic>TTGACTTGTGATAAAATGAAAATGTTATTTGCATTGGTTTCTGATTTTTAAAAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGTAATTAAATGGCTCCCGAACTGTCAACTTCTCGTGTGCTGTAAATCAGGTGTAAAAGTGATTAAGTGGAAAAGTTAATAAAAATATTTTCAAAATTTAAAATTTTTTTCAAAAATCCTCCTACAGTAACCGAGGCGAAGGAGGTCCTCCGACTGCTAACCAAAATATTATATTACGGTCCAGTCTTGTTTCCTTTCTTGGTTTATCGCATCTACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAWCGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCTTCCTTCTCACTCTTCTATTTCCCTCCGATGCGTCTGCTTGTATTCTCCCTTTTTCTATTGCTACCTGAATTGGCTCGGGGATTCGAGTCTTTGGACCTTTCCGAGTACAATCATCTTTCCTCGAATACCATCATTGACTTCTATGACAATGAAATCCCGGACATTGATTTTGAATCGGAACTTCGTCGTTTCCAAGAACCAATACCAAAAACTGGAGCTGAAATGATGGCCAGATTCAACAGGAATTTTTTGAATTTCCTATCGAAAGGCGAAAGAAAGGATTGGAATAATTTGATGCAAATCATGTCGCCGGATGCGTATATTGAGACTTGTATGGCATCGGCTTATGGATTGAGTCTGGATCAGTTTTATAAATGGATGACCTACTTGAGCAAGTTCTATTTGGAAGTTGGGGTAAACATCCTAATCATCTATAATATAAAAAAATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACCGTATCTAGAAACTTTTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTAGCAATAGAAAAAGGGAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCTTCCTTCTCACTCTTCTATTTCCCTCCGATGCGTCTGCTTGTATTCTCCCTTTTTCTATTGCTAC</canonical_amplicon>
		<polymorphic_amplicon>TACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAWCGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCTTCCTTCTCACTCTTCTATTTCCCTCCGATGCGTCTGCTTGTATTCTCCCTTTTTCTATTGCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22930</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>94774</contig_pos>
        <strand>+</strand>
        <context>GGCTGGGAAA[A/T]CGTCTTAAWC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAA</left_flank>
        <right_flank>CGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATGATTCTTGACTTGTGATAAAATGAAAATGTTATTTGCATTGGTTTCTGATTTTTAAAAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGTAATTAAATGGCTCCCGAACTGTCAACTTCTCGTGTGCTGTAAATCAGGTGTAAAAGTGATTAAGTGGAAAAGTTAATAAAAATATTTTCAAAATTTAAAATTTTTTTCAAAAATCCTCCTACAGTAACCGAGGCGAAGGAGGTCCTCCGACTGCTAACCAAAATATTATATTACGGTCCAGTCTTGTTTCCTTTCTTGGTTTATCGCATCTACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCTTCCTTCTCACTCTTCTATTTCCCTCCGATGCGTCTGCTTGTATTCTCCCTTTTTCTATTGCTACCTGAATTGGCTCGGGGATTCGAGTCTTTGGACCTTTCCGAGTACAATCATCTTTCCTCGAATACCATCATTGACTTCTATGACAATGAAATCCCGGACATTGATTTTGAATCGGAACTTCGTCGTTTCCAAGAACCAATACCAAAAACTGGAGCTGAAATGATGGCCAGATTCAACAGGAATTTTTTGAATTTCCTATCGAAAGGCGAAAGAAAGGATTGGAATAATTTGATGCAAATCATGTCGCCGGATGCGTATATTGAGACTTGTATGGCATCGGCTTATGGATTGAGTCTGGATCAGTTTTATAAATGGATGACCTACTTGAGCAAGTTCTATTTGGAAGTTGGGGTAAACATCCTAATCATCTATAATATA</canonical>
            <polymorphic>GAATGATTCTTGACTTGTGATAAAATGAAAATGTTATTTGCATTGGTTTCTGATTTTTAAAAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGTAATTAAATGGCTCCCGAACTGTCAACTTCTCGTGTGCTGTAAATCAGGTGTAAAAGTGATTAAGTGGAAAAGTTAATAAAAATATTTTCAAAATTTAAAATTTTTTTCAAAAATCCTCCTACAGTAACCGAGGCGAAGGAGGTCCTCCGACTGCTAACCAAAATATTATATTACGGTCCAGTCTTGTTTCCTTTCTTGGTTTATCGCATCTACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAAWCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCTTCCTTCTCACTCTTCTATTTCCCTCCGATGCGTCTGCTTGTATTCTCCCTTTTTCTATTGCTACCTGAATTGGCTCGGGGATTCGAGTCTTTGGACCTTTCCGAGTACAATCATCTTTCCTCGAATACCATCATTGACTTCTATGACAATGAAATCCCGGACATTGATTTTGAATCGGAACTTCGTCGTTTCCAAGAACCAATACCAAAAACTGGAGCTGAAATGATGGCCAGATTCAACAGGAATTTTTTGAATTTCCTATCGAAAGGCGAAAGAAAGGATTGGAATAATTTGATGCAAATCATGTCGCCGGATGCGTATATTGAGACTTGTATGGCATCGGCTTATGGATTGAGTCTGGATCAGTTTTATAAATGGATGACCTACTTGAGCAAGTTCTATTTGGAAGTTGGGGTAAACATCCTAATCATCTATAATATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACCGTATCTAGAAACTTTTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTAGCAATAGAAAAAGGGAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCTTCCTTCTCACTCTTCTATTTCCCTCCGATGCGTCTGCTTGTATTCTCCCTTTTTCTATTGCTAC</canonical_amplicon>
		<polymorphic_amplicon>TACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAAWCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCTTCCTTCTCACTCTTCTATTTCCCTCCGATGCGTCTGCTTGTATTCTCCCTTTTTCTATTGCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22931</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>94740</contig_pos>
        <strand>+</strand>
        <context>AACTGCAAGG[A/T]ATACTGTAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGG</left_flank>
        <right_flank>ATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAGTGTGATGAGACCAAAAAGAAGAAGAAGAGAATGATTCTTGACTTGTGATAAAATGAAAATGTTATTTGCATTGGTTTCTGATTTTTAAAAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGTAATTAAATGGCTCCCGAACTGTCAACTTCTCGTGTGCTGTAAATCAGGTGTAAAAGTGATTAAGTGGAAAAGTTAATAAAAATATTTTCAAAATTTAAAATTTTTTTCAAAAATCCTCCTACAGTAACCGAGGCGAAGGAGGTCCTCCGACTGCTAACCAAAATATTATATTACGGTCCAGTCTTGTTTCCTTTCTTGGTTTATCGCATCTACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCTTCCTTCTCACTCTTCTATTTCCCTCCGATGCGTCTGCTTGTATTCTCCCTTTTTCTATTGCTACCTGAATTGGCTCGGGGATTCGAGTCTTTGGACCTTTCCGAGTACAATCATCTTTCCTCGAATACCATCATTGACTTCTATGACAATGAAATCCCGGACATTGATTTTGAATCGGAACTTCGTCGTTTCCAAGAACCAATACCAAAAACTGGAGCTGAAATGATGGCCAGATTCAACAGGAATTTTTTGAATTTCCTATCGAAAGGCGAAAGAAAGGATTGGAATAATTTGATGCAAATCATGTCGCCGGATGCGTATATTGAGACTTGTATGGCATCGGCTTATGGATTGAGTCTGGATCAGTTTTATAAATGGATGACCTACTTGAGCAAGTTCTATTTGGA</canonical>
            <polymorphic>TTTGAGTGTGATGAGACCAAAAAGAAGAAGAAGAGAATGATTCTTGACTTGTGATAAAATGAAAATGTTATTTGCATTGGTTTCTGATTTTTAAAAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGTAATTAAATGGCTCCCGAACTGTCAACTTCTCGTGTGCTGTAAATCAGGTGTAAAAGTGATTAAGTGGAAAAGTTAATAAAAATATTTTCAAAATTTAAAATTTTTTTCAAAAATCCTCCTACAGTAACCGAGGCGAAGGAGGTCCTCCGACTGCTAACCAAAATATTATATTACGGTCCAGTCTTGTTTCCTTTCTTGGTTTATCGCATCTACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGWATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCTTCCTTCTCACTCTTCTATTTCCCTCCGATGCGTCTGCTTGTATTCTCCCTTTTTCTATTGCTACCTGAATTGGCTCGGGGATTCGAGTCTTTGGACCTTTCCGAGTACAATCATCTTTCCTCGAATACCATCATTGACTTCTATGACAATGAAATCCCGGACATTGATTTTGAATCGGAACTTCGTCGTTTCCAAGAACCAATACCAAAAACTGGAGCTGAAATGATGGCCAGATTCAACAGGAATTTTTTGAATTTCCTATCGAAAGGCGAAAGAAAGGATTGGAATAATTTGATGCAAATCATGTCGCCGGATGCGTATATTGAGACTTGTATGGCATCGGCTTATGGATTGAGTCTGGATCAGTTTTATAAATGGATGACCTACTTGAGCAAGTTCTATTTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACCGTATCTAGAAACTTTTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTAGCAATAGAAAAAGGGAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCTTCCTTCTCACTCTTCTATTTCCCTCCGATGCGTCTGCTTGTATTCTCCCTTTTTCTATTGCTAC</canonical_amplicon>
		<polymorphic_amplicon>TACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGWATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCTTCCTTCTCACTCTTCTATTTCCCTCCGATGCGTCTGCTTGTATTCTCCCTTTTTCTATTGCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22932</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>94681</contig_pos>
        <strand>+</strand>
        <context>CTTTTTGCTA[C/G]AGTACCCAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTTTCTTGGTTTATCGCATCTACCGTATCTAGAAACTTTTCTTTTTGCTA</left_flank>
        <right_flank>AGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTGGGATTTGCTGGATTCAAAGACAAAAAAGGACTGTGGCAAATGAATCGGATGTACTTTGAGTGTGATGAGACCAAAAAGAAGAAGAAGAGAATGATTCTTGACTTGTGATAAAATGAAAATGTTATTTGCATTGGTTTCTGATTTTTAAAAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGTAATTAAATGGCTCCCGAACTGTCAACTTCTCGTGTGCTGTAAATCAGGTGTAAAAGTGATTAAGTGGAAAAGTTAATAAAAATATTTTCAAAATTTAAAATTTTTTTCAAAAATCCTCCTACAGTAACCGAGGCGAAGGAGGTCCTCCGACTGCTAACCAAAATATTATATTACGGTCCAGTCTTGTTTCCTTTCTTGGTTTATCGCATCTACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCTTCCTTCTCACTCTTCTATTTCCCTCCGATGCGTCTGCTTGTATTCTCCCTTTTTCTATTGCTACCTGAATTGGCTCGGGGATTCGAGTCTTTGGACCTTTCCGAGTACAATCATCTTTCCTCGAATACCATCATTGACTTCTATGACAATGAAATCCCGGACATTGATTTTGAATCGGAACTTCGTCGTTTCCAAGAACCAATACCAAAAACTGGAGCTGAAATGATGGCCAGATTCAACAGGAATTTTTTGAATTTCCTATCGAAAGGCGAAAGAAAGGATTGGAATAATTTGATGCAAATCATGTCGCCGGATGCGTATATTGAGACTTGTATGGCATCGGCTTAT</canonical>
            <polymorphic>ATGTGGGATTTGCTGGATTCAAAGACAAAAAAGGACTGTGGCAAATGAATCGGATGTACTTTGAGTGTGATGAGACCAAAAAGAAGAAGAAGAGAATGATTCTTGACTTGTGATAAAATGAAAATGTTATTTGCATTGGTTTCTGATTTTTAAAAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGTAATTAAATGGCTCCCGAACTGTCAACTTCTCGTGTGCTGTAAATCAGGTGTAAAAGTGATTAAGTGGAAAAGTTAATAAAAATATTTTCAAAATTTAAAATTTTTTTCAAAAATCCTCCTACAGTAACCGAGGCGAAGGAGGTCCTCCGACTGCTAACCAAAATATTATATTACGGTCCAGTCTTGTTTCCTTTCTTGGTTTATCGCATCTACCGTATCTAGAAACTTTTCTTTTTGCTASAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCTTCCTTCTCACTCTTCTATTTCCCTCCGATGCGTCTGCTTGTATTCTCCCTTTTTCTATTGCTACCTGAATTGGCTCGGGGATTCGAGTCTTTGGACCTTTCCGAGTACAATCATCTTTCCTCGAATACCATCATTGACTTCTATGACAATGAAATCCCGGACATTGATTTTGAATCGGAACTTCGTCGTTTCCAAGAACCAATACCAAAAACTGGAGCTGAAATGATGGCCAGATTCAACAGGAATTTTTTGAATTTCCTATCGAAAGGCGAAAGAAAGGATTGGAATAATTTGATGCAAATCATGTCGCCGGATGCGTATATTGAGACTTGTATGGCATCGGCTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>478 472 31 19</canonical_bands>
                <polymorphic_bands>478 472 50</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTACGGTCCAGTCTTGTTTC</pcr_primer_p1>
		<pcr_primer_p2>GGAGGGAAATAGAAGAGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATTACGGTCCAGTCTTGTTTCCTTTCTTGGTTTATCGCATCTACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCTTCCTTCTCACTCTTCTATTTCCCTCC</canonical_amplicon>
		<polymorphic_amplicon>TATTACGGTCCAGTCTTGTTTCCTTTCTTGGTTTATCGCATCTACCGTATCTAGAAACTTTTCTTTTTGCTASAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCTTCCTTCTCACTCTTCTATTTCCCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22983</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>94335</contig_pos>
        <strand></strand>
        <context>TGatttttww[A/T]aaaaaatata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGACTTGTGATAAAATGAAAATGTTATTTGCATTGGTTTCTGATTTTTAA</left_flank>
        <right_flank>AAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTTGGATGGTGCAACTATCCTCGGCGAAGTAAATAAACGATTCTGTGGTATGATTAATGGAGAAAATTGGGATGTTTATCAATCGTTCTTGGATCTTTTTGAAAAAAGCGACACACAATGGGGAACTTGTGCTGGATCAAAAAGGCAAACCTATGGTAAAATTGAAGCGATGATAGAAGAAATCATTTGATTTTCAGACCATATTCGTGGGCACATGGAAAAGGTGGCTACTCGGTATGCAAAGTGTACGGTATATGTGAGGATCCGGAATTTGGTGGCTGCGGACTTTTCGACAACTTTTCTGGTGAGCAGAGCAACGGAAGTTCAGGAGCAAGAGGAATTGGATGTGGGATTTGCTGGATTCAAAGACAAAAAAGGACTGTGGCAAATGAATCGGATGTACTTTGAGTGTGATGAGACCAAAAAGAAGAAGAAGAGAATGATTCTTGACTTGTGATAAAATGAAAATGTTATTTGCATTGGTTTCTGATTTTTAAAAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGTAATTAAATGGCTCCCGAACTGTCAACTTCTCGTGTGCTGTAAATCAGGTGTAAAAGTGATTAAGTGGAAAAGTTAATAAAAATATTTTCAAAATTTAAAATTTTTTTCAAAAATCCTCCTACAGTAACCGAGGCGAAGGAGGTCCTCCGACTGCTAACCAAAATATTATATTACGGTCCAGTCTTGTTTCCTTTCTTGGTTTATCGCATCTACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCTTC</canonical>
            <polymorphic>CTCTTGGATGGTGCAACTATCCTCGGCGAAGTAAATAAACGATTCTGTGGTATGATTAATGGAGAAAATTGGGATGTTTATCAATCGTTCTTGGATCTTTTTGAAAAAAGCGACACACAATGGGGAACTTGTGCTGGATCAAAAAGGCAAACCTATGGTAAAATTGAAGCGATGATAGAAGAAATCATTTGATTTTCAGACCATATTCGTGGGCACATGGAAAAGGTGGCTACTCGGTATGCAAAGTGTACGGTATATGTGAGGATCCGGAATTTGGTGGCTGCGGACTTTTCGACAACTTTTCTGGTGAGCAGAGCAACGGAAGTTCAGGAGCAAGAGGAATTGGATGTGGGATTTGCTGGATTCAAAGACAAAAAAGGACTGTGGCAAATGAATCGGATGTACTTTGAGTGTGATGAGACCAAAAAGAAGAAGAAGAGAATGATTCTTGACTTGTGATAAAATGAAAATGTTATTTGCATTGGTTTCTGATTTTTAAWAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGTAATTAAATGGCTCCCGAACTGTCAACTTCTCGTGTGCTGTAAATCAGGTGTAAAAGTGATTAAGTGGAAAAGTTAATAAAAATATTTTCAAAATTTAAAATTTTTTTCAAAAATCCTCCTACAGTAACCGAGGCGAAGGAGGTCCTCCGACTGCTAACCAAAATATTATATTACGGTCCAGTCTTGTTTCCTTTCTTGGTTTATCGCATCTACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>497 299 137 67</canonical_bands>
                <polymorphic_bands>564 299 137</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAAGAAGAAGAAGAGAATGA</pcr_primer_p1>
		<pcr_primer_p2>CCACTTAATCACTTTTACACCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAAAGAAGAAGAAGAGAATGATTCTTGACTTGTGATAAAATGAAAATGTTATTTGCATTGGTTTCTGATTTTTAAAAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGTAATTAAATGGCTCCCGAACTGTCAACTTCTCGTGTGCTGTAAATCAGGTGTAAAAGTGATTAAGTGG</canonical_amplicon>
		<polymorphic_amplicon>CAAAAAGAAGAAGAAGAGAATGATTCTTGACTTGTGATAAAATGAAAATGTTATTTGCATTGGTTTCTGATTTTTAAWAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGTAATTAAATGGCTCCCGAACTGTCAACTTCTCGTGTGCTGTAAATCAGGTGTAAAAGTGATTAAGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22984</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>94334</contig_pos>
        <strand></strand>
        <context>YTGatttttw[A/T]waaaaaatat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGACTTGTGATAAAATGAAAATGTTATTTGCATTGGTTTCTGATTTTTA</left_flank>
        <right_flank>AAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGAT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCTTGGATGGTGCAACTATCCTCGGCGAAGTAAATAAACGATTCTGTGGTATGATTAATGGAGAAAATTGGGATGTTTATCAATCGTTCTTGGATCTTTTTGAAAAAAGCGACACACAATGGGGAACTTGTGCTGGATCAAAAAGGCAAACCTATGGTAAAATTGAAGCGATGATAGAAGAAATCATTTGATTTTCAGACCATATTCGTGGGCACATGGAAAAGGTGGCTACTCGGTATGCAAAGTGTACGGTATATGTGAGGATCCGGAATTTGGTGGCTGCGGACTTTTCGACAACTTTTCTGGTGAGCAGAGCAACGGAAGTTCAGGAGCAAGAGGAATTGGATGTGGGATTTGCTGGATTCAAAGACAAAAAAGGACTGTGGCAAATGAATCGGATGTACTTTGAGTGTGATGAGACCAAAAAGAAGAAGAAGAGAATGATTCTTGACTTGTGATAAAATGAAAATGTTATTTGCATTGGTTTCTGATTTTTAAAAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGTAATTAAATGGCTCCCGAACTGTCAACTTCTCGTGTGCTGTAAATCAGGTGTAAAAGTGATTAAGTGGAAAAGTTAATAAAAATATTTTCAAAATTTAAAATTTTTTTCAAAAATCCTCCTACAGTAACCGAGGCGAAGGAGGTCCTCCGACTGCTAACCAAAATATTATATTACGGTCCAGTCTTGTTTCCTTTCTTGGTTTATCGCATCTACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCTT</canonical>
            <polymorphic>TCTCTTGGATGGTGCAACTATCCTCGGCGAAGTAAATAAACGATTCTGTGGTATGATTAATGGAGAAAATTGGGATGTTTATCAATCGTTCTTGGATCTTTTTGAAAAAAGCGACACACAATGGGGAACTTGTGCTGGATCAAAAAGGCAAACCTATGGTAAAATTGAAGCGATGATAGAAGAAATCATTTGATTTTCAGACCATATTCGTGGGCACATGGAAAAGGTGGCTACTCGGTATGCAAAGTGTACGGTATATGTGAGGATCCGGAATTTGGTGGCTGCGGACTTTTCGACAACTTTTCTGGTGAGCAGAGCAACGGAAGTTCAGGAGCAAGAGGAATTGGATGTGGGATTTGCTGGATTCAAAGACAAAAAAGGACTGTGGCAAATGAATCGGATGTACTTTGAGTGTGATGAGACCAAAAAGAAGAAGAAGAGAATGATTCTTGACTTGTGATAAAATGAAAATGTTATTTGCATTGGTTTCTGATTTTTAWAAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGTAATTAAATGGCTCCCGAACTGTCAACTTCTCGTGTGCTGTAAATCAGGTGTAAAAGTGATTAAGTGGAAAAGTTAATAAAAATATTTTCAAAATTTAAAATTTTTTTCAAAAATCCTCCTACAGTAACCGAGGCGAAGGAGGTCCTCCGACTGCTAACCAAAATATTATATTACGGTCCAGTCTTGTTTCCTTTCTTGGTTTATCGCATCTACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>498 298 137 67</canonical_bands>
                <polymorphic_bands>565 298 137</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>440 244 67 57 57 55 34 22 13 11</canonical_bands>
                <polymorphic_bands>507 244 57 57 55 34 22 13 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAAGAAGAAGAAGAGAATGA</pcr_primer_p1>
		<pcr_primer_p2>CCACTTAATCACTTTTACACCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAAAGAAGAAGAAGAGAATGATTCTTGACTTGTGATAAAATGAAAATGTTATTTGCATTGGTTTCTGATTTTTAAAAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGTAATTAAATGGCTCCCGAACTGTCAACTTCTCGTGTGCTGTAAATCAGGTGTAAAAGTGATTAAGTGG</canonical_amplicon>
		<polymorphic_amplicon>CAAAAAGAAGAAGAAGAGAATGATTCTTGACTTGTGATAAAATGAAAATGTTATTTGCATTGGTTTCTGATTTTTAWAAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGTAATTAAATGGCTCCCGAACTGTCAACTTCTCGTGTGCTGTAAATCAGGTGTAAAAGTGATTAAGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22985</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>94333</contig_pos>
        <strand></strand>
        <context>TYTGattttt[A/T]wwaaaaaata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTGACTTGTGATAAAATGAAAATGTTATTTGCATTGGTTTCTGATTTTT</left_flank>
        <right_flank>AAAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTCTTGGATGGTGCAACTATCCTCGGCGAAGTAAATAAACGATTCTGTGGTATGATTAATGGAGAAAATTGGGATGTTTATCAATCGTTCTTGGATCTTTTTGAAAAAAGCGACACACAATGGGGAACTTGTGCTGGATCAAAAAGGCAAACCTATGGTAAAATTGAAGCGATGATAGAAGAAATCATTTGATTTTCAGACCATATTCGTGGGCACATGGAAAAGGTGGCTACTCGGTATGCAAAGTGTACGGTATATGTGAGGATCCGGAATTTGGTGGCTGCGGACTTTTCGACAACTTTTCTGGTGAGCAGAGCAACGGAAGTTCAGGAGCAAGAGGAATTGGATGTGGGATTTGCTGGATTCAAAGACAAAAAAGGACTGTGGCAAATGAATCGGATGTACTTTGAGTGTGATGAGACCAAAAAGAAGAAGAAGAGAATGATTCTTGACTTGTGATAAAATGAAAATGTTATTTGCATTGGTTTCTGATTTTTAAAAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGTAATTAAATGGCTCCCGAACTGTCAACTTCTCGTGTGCTGTAAATCAGGTGTAAAAGTGATTAAGTGGAAAAGTTAATAAAAATATTTTCAAAATTTAAAATTTTTTTCAAAAATCCTCCTACAGTAACCGAGGCGAAGGAGGTCCTCCGACTGCTAACCAAAATATTATATTACGGTCCAGTCTTGTTTCCTTTCTTGGTTTATCGCATCTACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCT</canonical>
            <polymorphic>CTCTCTTGGATGGTGCAACTATCCTCGGCGAAGTAAATAAACGATTCTGTGGTATGATTAATGGAGAAAATTGGGATGTTTATCAATCGTTCTTGGATCTTTTTGAAAAAAGCGACACACAATGGGGAACTTGTGCTGGATCAAAAAGGCAAACCTATGGTAAAATTGAAGCGATGATAGAAGAAATCATTTGATTTTCAGACCATATTCGTGGGCACATGGAAAAGGTGGCTACTCGGTATGCAAAGTGTACGGTATATGTGAGGATCCGGAATTTGGTGGCTGCGGACTTTTCGACAACTTTTCTGGTGAGCAGAGCAACGGAAGTTCAGGAGCAAGAGGAATTGGATGTGGGATTTGCTGGATTCAAAGACAAAAAAGGACTGTGGCAAATGAATCGGATGTACTTTGAGTGTGATGAGACCAAAAAGAAGAAGAAGAGAATGATTCTTGACTTGTGATAAAATGAAAATGTTATTTGCATTGGTTTCTGATTTTTWAAAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGTAATTAAATGGCTCCCGAACTGTCAACTTCTCGTGTGCTGTAAATCAGGTGTAAAAGTGATTAAGTGGAAAAGTTAATAAAAATATTTTCAAAATTTAAAATTTTTTTCAAAAATCCTCCTACAGTAACCGAGGCGAAGGAGGTCCTCCGACTGCTAACCAAAATATTATATTACGGTCCAGTCTTGTTTCCTTTCTTGGTTTATCGCATCTACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 297 137 67</canonical_bands>
                <polymorphic_bands>566 297 137</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>440 244 67 58 57 54 34 22 13 11</canonical_bands>
                <polymorphic_bands>507 244 58 57 54 34 22 13 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAAGAAGAAGAAGAGAATGA</pcr_primer_p1>
		<pcr_primer_p2>CCACTTAATCACTTTTACACCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAAAGAAGAAGAAGAGAATGATTCTTGACTTGTGATAAAATGAAAATGTTATTTGCATTGGTTTCTGATTTTTAAAAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGTAATTAAATGGCTCCCGAACTGTCAACTTCTCGTGTGCTGTAAATCAGGTGTAAAAGTGATTAAGTGG</canonical_amplicon>
		<polymorphic_amplicon>CAAAAAGAAGAAGAAGAGAATGATTCTTGACTTGTGATAAAATGAAAATGTTATTTGCATTGGTTTCTGATTTTTWAAAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGTAATTAAATGGCTCCCGAACTGTCAACTTCTCGTGTGCTGTAAATCAGGTGTAAAAGTGATTAAGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22992</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>95662</contig_pos>
        <strand>+</strand>
        <context>TGTACAACTA[A/C]TTGAATCCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGGATGGTGGTCTTCATTATAAGTCGGCTTATGAATCCATGTACAACTA</left_flank>
        <right_flank>TTGAATCCTTCACCATTCATTAACATTTGTGACGTTGGAAAAATGTCAGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTATGGCATCGGCTTATGGATTGAGTCTGGATCAGTTTTATAAATGGATGACCTACTTGAGCAAGTTCTATTTGGAAGTTGGGGTAAACATCCTAATCATCTATAATATAAAAAAATGAGAAGATACATTTCAGTTGACTAGCACGGTCATAACAGACAGCTCCGATGATATCACCACTGAACTGGATTATAGGTCAGACGTCAGAGGAGACATCAAGAGAAATGATAAATGGACAATGTCAGCTACATTCGATAAGGAGAAGGGGCATTTTGTTGCGAACACATTGAAGATGATGTCTGATTGCTCGACTATTCCGAAGACTCCTCCACTTGAACCAGCCATACCTGTGGAAACTTTCATTTCAAGTTTGAAAAACAAGTAAATTTTTGGCAGATGAGATGATTTTGAATACAAAAAATCGATTAAGATTGGTAAGTGACATCTTCCTGGATGGTGGTCTTCATTATAAGTCGGCTTATGAATCCATGTACAACTAATTGAATCCTTCACCATTCATTAACATTTGTGACGTTGGAAAAATGTCAGCGAGTGAGTAAGAATACATGTCAATAATTCTAATAGAAAGCCACCCAAACCGTCATCTTTTAGCCCATATATCTCAGTTCCTGTAAGAGATATAAAAATTGGTCAAAAAACAAAATTCTTGTCATAACATTACAAATAGTTTATCAGTTGACCACTTTTTGATATCTTCTACAGGAGCTTTGATATATGAGCTTAAGATTGACAGTTTGGGTGGTCTTCTATTAGAGTGTTTTCGGTATTTTTGTTTACAGATCAGTTTGTGGAATACTGGAACAAGAGATATGGGAAGGTTCAAAAATACATGGTGTGCTATTATATTTTATTAAAACTTTTTTTTGAAAGTCTATTCATTCAGAATCATACTTTCGAAGTGACCCATACCGAAAATAAGACTTATTATGTCGACTTTTCTGTGACTTATCAAGGGGAACCAGGAACATTCTACAAGGAC</canonical>
            <polymorphic>TTGTATGGCATCGGCTTATGGATTGAGTCTGGATCAGTTTTATAAATGGATGACCTACTTGAGCAAGTTCTATTTGGAAGTTGGGGTAAACATCCTAATCATCTATAATATAAAAAAATGAGAAGATACATTTCAGTTGACTAGCACGGTCATAACAGACAGCTCCGATGATATCACCACTGAACTGGATTATAGGTCAGACGTCAGAGGAGACATCAAGAGAAATGATAAATGGACAATGTCAGCTACATTCGATAAGGAGAAGGGGCATTTTGTTGCGAACACATTGAAGATGATGTCTGATTGCTCGACTATTCCGAAGACTCCTCCACTTGAACCAGCCATACCTGTGGAAACTTTCATTTCAAGTTTGAAAAACAAGTAAATTTTTGGCAGATGAGATGATTTTGAATACAAAAAATCGATTAAGATTGGTAAGTGACATCTTCCTGGATGGTGGTCTTCATTATAAGTCGGCTTATGAATCCATGTACAACTAMTTGAATCCTTCACCATTCATTAACATTTGTGACGTTGGAAAAATGTCAGCGAGTGAGTAAGAATACATGTCAATAATTCTAATAGAAAGCCACCCAAACCGTCATCTTTTAGCCCATATATCTCAGTTCCTGTAAGAGATATAAAAATTGGTCAAAAAACAAAATTCTTGTCATAACATTACAAATAGTTTATCAGTTGACCACTTTTTGATATCTTCTACAGGAGCTTTGATATATGAGCTTAAGATTGACAGTTTGGGTGGTCTTCTATTAGAGTGTTTTCGGTATTTTTGTTTACAGATCAGTTTGTGGAATACTGGAACAAGAGATATGGGAAGGTTCAAAAATACATGGTGTGCTATTATATTTTATTAAAACTTTTTTTTGAAAGTCTATTCATTCAGAATCATACTTTCGAAGTGACCCATACCGAAAATAAGACTTATTATGTCGACTTTTCTGTGACTTATCAAGGGGAACCAGGAACATTCTACAAGGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>384 338 114 76 71 17</canonical_bands>
                <polymorphic_bands>384 338 190 71 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGACTCCTCCACTTGAACC</pcr_primer_p1>
		<pcr_primer_p2>TATTCTTACTCACTCGCTGACAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAGACTCCTCCACTTGAACCAGCCATACCTGTGGAAACTTTCATTTCAAGTTTGAAAAACAAGTAAATTTTTGGCAGATGAGATGATTTTGAATACAAAAAATCGATTAAGATTGGTAAGTGACATCTTCCTGGATGGTGGTCTTCATTATAAGTCGGCTTATGAATCCATGTACAACTAATTGAATCCTTCACCATTCATTAACATTTGTGACGTTGGAAAAATGTCAGCGAGTGAGTAAGAATA</canonical_amplicon>
		<polymorphic_amplicon>AAGACTCCTCCACTTGAACCAGCCATACCTGTGGAAACTTTCATTTCAAGTTTGAAAAACAAGTAAATTTTTGGCAGATGAGATGATTTTGAATACAAAAAATCGATTAAGATTGGTAAGTGACATCTTCCTGGATGGTGGTCTTCATTATAAGTCGGCTTATGAATCCATGTACAACTAMTTGAATCCTTCACCATTCATTAACATTTGTGACGTTGGAAAAATGTCAGCGAGTGAGTAAGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22993</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>112849</contig_pos>
        <strand>+</strand>
        <context>TCTGCGCCAA[A/G]TACGACGTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGATAATTGCAGTTTGAAATTCTGTGTTTCAGGAAGACCTCTGCGCCAA</left_flank>
        <right_flank>TACGACGTCAAGATGATGCCCACGTTCGTCTTCACCAAAAACGGAGAGAC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTTCTCCTTTCCCGCTCATTCCAACCTGTAATTATGTGGGCGTGACTGCGTCAAACCGACTGAAAGTTTTCTTTCTTTATACCAGCTCACTTCTTCTTCATAATTTCATTTCCTGTGCATCATTGTTTGAGTATCAACCTCCTACCGTGGGTACCAGTTCTACTCACCTCTATCCAGTTATGTCTCTCTCCAAGGAACCGATCCTCGAGTTGTCCGATATGGTAAGGACACAGTGATCCCATTCAGAAAGTATTGAATATATATATATATTCAGGCCGAGTTCAATCATCTGGTTCGCCAGCATCCAGAGAAAGTCATCGTCTTGGACTTCTTCGCCACGTGGTGTGGACCATGTAAGGCGATCGCTCCATTGTACAGGGAACTGGCCATCGAGTACAAGGGAGTCATCTTTTGCAAAGTCGATGTTGATGAAGCCGTTAGTAAATCTAGATAATTGCAGTTTGAAATTCTGTGTTTCAGGAAGACCTCTGCGCCAAGTACGACGTCAAGATGATGCCCACGTTCGTCTTCACCAAAAACGGAGAGACACTGGTAAGCGAGACGTTTATTGGGCTATGAATGGGAAGTTTGTCACTTGTGGAATTATGAGTCCTGTAAACGATTGTCAGTATTGATAATTCAATTAGAATCAGAAGTTCCATAAGATTTTAGATTTTTTTTTCTTATTGATACTGTAAAACCTGTAATAGCAAGGCCTCCTAACTTTTACTTTGAGGCGACTTTTCTCGGTTCCTGTCAAAGGTATGAAAAAGTTGTCAATTGATAAATTGTTTATCATAATATCAGACGTGTTTCGTCAGTTGACACAATCTTGATGTTTTGAATAGTAATTGAGAGAATTTAGTCCAAACTTGACAGTATTTGGGCCCTTCTAATACAGGTTTCACGTTAATGTGAATTCGATGATATCGCGTTCCGCTTCACACCGTAACCACCCATCCCCCTATACGTCCATCAATTAAAAAATACTTACGACC</canonical>
            <polymorphic>TCTTTCTCCTTTCCCGCTCATTCCAACCTGTAATTATGTGGGCGTGACTGCGTCAAACCGACTGAAAGTTTTCTTTCTTTATACCAGCTCACTTCTTCTTCATAATTTCATTTCCTGTGCATCATTGTTTGAGTATCAACCTCCTACCGTGGGTACCAGTTCTACTCACCTCTATCCAGTTATGTCTCTCTCCAAGGAACCGATCCTCGAGTTGTCCGATATGGTAAGGACACAGTGATCCCATTCAGAAAGTATTGAATATATATATATATTCAGGCCGAGTTCAATCATCTGGTTCGCCAGCATCCAGAGAAAGTCATCGTCTTGGACTTCTTCGCCACGTGGTGTGGACCATGTAAGGCGATCGCTCCATTGTACAGGGAACTGGCCATCGAGTACAAGGGAGTCATCTTTTGCAAAGTCGATGTTGATGAAGCCGTTAGTAAATCTAGATAATTGCAGTTTGAAATTCTGTGTTTCAGGAAGACCTCTGCGCCAARTACGACGTCAAGATGATGCCCACGTTCGTCTTCACCAAAAACGGAGAGACACTGGTAAGCGAGACGTTTATTGGGCTATGAATGGGAAGTTTGTCACTTGTGGAATTATGAGTCCTGTAAACGATTGTCAGTATTGATAATTCAATTAGAATCAGAAGTTCCATAAGATTTTAGATTTTTTTTTCTTATTGATACTGTAAAACCTGTAATAGCAAGGCCTCCTAACTTTTACTTTGAGGCGACTTTTCTCGGTTCCTGTCAAAGGTATGAAAAAGTTGTCAATTGATAAATTGTTTATCATAATATCAGACGTGTTTCGTCAGTTGACACAATCTTGATGTTTTGAATAGTAATTGAGAGAATTTAGTCCAAACTTGACAGTATTTGGGCCCTTCTAATACAGGTTTCACGTTAATGTGAATTCGATGATATCGCGTTCCGCTTCACACCGTAACCACCCATCCCCCTATACGTCCATCAATTAAAAAATACTTACGACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 222 154 104 21</canonical_bands>
                <polymorphic_bands>603 222 154 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGATGAAGCCGTTAGTAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAATCTTATGGAACTTCTGATTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTGATGAAGCCGTTAGTAAATCTAGATAATTGCAGTTTGAAATTCTGTGTTTCAGGAAGACCTCTGCGCCAAGTACGACGTCAAGATGATGCCCACGTTCGTCTTCACCAAAAACGGAGAGACACTGGTAAGCGAGACGTTTATTGGGCTATGAATGGGAAGTTTGTCACTTGTGGAATTATGAGTCCTGTAAACGATTGTCAGTATTGATAATTCAATTAGAATCAGAAGTTCCATAAGATTTT</canonical_amplicon>
		<polymorphic_amplicon>GTTGATGAAGCCGTTAGTAAATCTAGATAATTGCAGTTTGAAATTCTGTGTTTCAGGAAGACCTCTGCGCCAARTACGACGTCAAGATGATGCCCACGTTCGTCTTCACCAAAAACGGAGAGACACTGGTAAGCGAGACGTTTATTGGGCTATGAATGGGAAGTTTGTCACTTGTGGAATTATGAGTCCTGTAAACGATTGTCAGTATTGATAATTCAATTAGAATCAGAAGTTCCATAAGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22994</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>112885</contig_pos>
        <strand>+</strand>
        <context>TCGTCTTCAC[C/T]AAAAACGGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACCTCTGCGCCAAGTACGACGTCAAGATGATGCCCACGTTCGTCTTCAC</left_flank>
        <right_flank>AAAAACGGAGAGACACTGGTAAGCGAGACGTTTATTGGGCTATGAATGGG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGGGCGTGACTGCGTCAAACCGACTGAAAGTTTTCTTTCTTTATACCAGCTCACTTCTTCTTCATAATTTCATTTCCTGTGCATCATTGTTTGAGTATCAACCTCCTACCGTGGGTACCAGTTCTACTCACCTCTATCCAGTTATGTCTCTCTCCAAGGAACCGATCCTCGAGTTGTCCGATATGGTAAGGACACAGTGATCCCATTCAGAAAGTATTGAATATATATATATATTCAGGCCGAGTTCAATCATCTGGTTCGCCAGCATCCAGAGAAAGTCATCGTCTTGGACTTCTTCGCCACGTGGTGTGGACCATGTAAGGCGATCGCTCCATTGTACAGGGAACTGGCCATCGAGTACAAGGGAGTCATCTTTTGCAAAGTCGATGTTGATGAAGCCGTTAGTAAATCTAGATAATTGCAGTTTGAAATTCTGTGTTTCAGGAAGACCTCTGCGCCAAGTACGACGTCAAGATGATGCCCACGTTCGTCTTCACCAAAAACGGAGAGACACTGGTAAGCGAGACGTTTATTGGGCTATGAATGGGAAGTTTGTCACTTGTGGAATTATGAGTCCTGTAAACGATTGTCAGTATTGATAATTCAATTAGAATCAGAAGTTCCATAAGATTTTAGATTTTTTTTTCTTATTGATACTGTAAAACCTGTAATAGCAAGGCCTCCTAACTTTTACTTTGAGGCGACTTTTCTCGGTTCCTGTCAAAGGTATGAAAAAGTTGTCAATTGATAAATTGTTTATCATAATATCAGACGTGTTTCGTCAGTTGACACAATCTTGATGTTTTGAATAGTAATTGAGAGAATTTAGTCCAAACTTGACAGTATTTGGGCCCTTCTAATACAGGTTTCACGTTAATGTGAATTCGATGATATCGCGTTCCGCTTCACACCGTAACCACCCATCCCCCTATACGTCCATCAATTAAAAAATACTTACGACCAATACAAAAATCTTCTAATTGAATTTTCGAGCAGGT</canonical>
            <polymorphic>TGTGGGCGTGACTGCGTCAAACCGACTGAAAGTTTTCTTTCTTTATACCAGCTCACTTCTTCTTCATAATTTCATTTCCTGTGCATCATTGTTTGAGTATCAACCTCCTACCGTGGGTACCAGTTCTACTCACCTCTATCCAGTTATGTCTCTCTCCAAGGAACCGATCCTCGAGTTGTCCGATATGGTAAGGACACAGTGATCCCATTCAGAAAGTATTGAATATATATATATATTCAGGCCGAGTTCAATCATCTGGTTCGCCAGCATCCAGAGAAAGTCATCGTCTTGGACTTCTTCGCCACGTGGTGTGGACCATGTAAGGCGATCGCTCCATTGTACAGGGAACTGGCCATCGAGTACAAGGGAGTCATCTTTTGCAAAGTCGATGTTGATGAAGCCGTTAGTAAATCTAGATAATTGCAGTTTGAAATTCTGTGTTTCAGGAAGACCTCTGCGCCAAGTACGACGTCAAGATGATGCCCACGTTCGTCTTCACYAAAAACGGAGAGACACTGGTAAGCGAGACGTTTATTGGGCTATGAATGGGAAGTTTGTCACTTGTGGAATTATGAGTCCTGTAAACGATTGTCAGTATTGATAATTCAATTAGAATCAGAAGTTCCATAAGATTTTAGATTTTTTTTTCTTATTGATACTGTAAAACCTGTAATAGCAAGGCCTCCTAACTTTTACTTTGAGGCGACTTTTCTCGGTTCCTGTCAAAGGTATGAAAAAGTTGTCAATTGATAAATTGTTTATCATAATATCAGACGTGTTTCGTCAGTTGACACAATCTTGATGTTTTGAATAGTAATTGAGAGAATTTAGTCCAAACTTGACAGTATTTGGGCCCTTCTAATACAGGTTTCACGTTAATGTGAATTCGATGATATCGCGTTCCGCTTCACACCGTAACCACCCATCCCCCTATACGTCCATCAATTAAAAAATACTTACGACCAATACAAAAATCTTCTAATTGAATTTTCGAGCAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGATGAAGCCGTTAGTAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAATCTTATGGAACTTCTGATTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTGATGAAGCCGTTAGTAAATCTAGATAATTGCAGTTTGAAATTCTGTGTTTCAGGAAGACCTCTGCGCCAAGTACGACGTCAAGATGATGCCCACGTTCGTCTTCACCAAAAACGGAGAGACACTGGTAAGCGAGACGTTTATTGGGCTATGAATGGGAAGTTTGTCACTTGTGGAATTATGAGTCCTGTAAACGATTGTCAGTATTGATAATTCAATTAGAATCAGAAGTTCCATAAGATTTT</canonical_amplicon>
		<polymorphic_amplicon>GTTGATGAAGCCGTTAGTAAATCTAGATAATTGCAGTTTGAAATTCTGTGTTTCAGGAAGACCTCTGCGCCAAGTACGACGTCAAGATGATGCCCACGTTCGTCTTCACYAAAAACGGAGAGACACTGGTAAGCGAGACGTTTATTGGGCTATGAATGGGAAGTTTGTCACTTGTGGAATTATGAGTCCTGTAAACGATTGTCAGTATTGATAATTCAATTAGAATCAGAAGTTCCATAAGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22995</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>112993</contig_pos>
        <strand>+</strand>
        <context>TTGATAATTC[A/T]ATTAGAATCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCACTTGTGGAATTATGAGTCCTGTAAACGATTGTCAGTATTGATAATTC</left_flank>
        <right_flank>ATTAGAATCAGAAGTTCCATAAGATTTTAGATTTTTTTTTCTTATTGATA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACCGTGGGTACCAGTTCTACTCACCTCTATCCAGTTATGTCTCTCTCCAAGGAACCGATCCTCGAGTTGTCCGATATGGTAAGGACACAGTGATCCCATTCAGAAAGTATTGAATATATATATATATTCAGGCCGAGTTCAATCATCTGGTTCGCCAGCATCCAGAGAAAGTCATCGTCTTGGACTTCTTCGCCACGTGGTGTGGACCATGTAAGGCGATCGCTCCATTGTACAGGGAACTGGCCATCGAGTACAAGGGAGTCATCTTTTGCAAAGTCGATGTTGATGAAGCCGTTAGTAAATCTAGATAATTGCAGTTTGAAATTCTGTGTTTCAGGAAGACCTCTGCGCCAAGTACGACGTCAAGATGATGCCCACGTTCGTCTTCACCAAAAACGGAGAGACACTGGTAAGCGAGACGTTTATTGGGCTATGAATGGGAAGTTTGTCACTTGTGGAATTATGAGTCCTGTAAACGATTGTCAGTATTGATAATTCAATTAGAATCAGAAGTTCCATAAGATTTTAGATTTTTTTTTCTTATTGATACTGTAAAACCTGTAATAGCAAGGCCTCCTAACTTTTACTTTGAGGCGACTTTTCTCGGTTCCTGTCAAAGGTATGAAAAAGTTGTCAATTGATAAATTGTTTATCATAATATCAGACGTGTTTCGTCAGTTGACACAATCTTGATGTTTTGAATAGTAATTGAGAGAATTTAGTCCAAACTTGACAGTATTTGGGCCCTTCTAATACAGGTTTCACGTTAATGTGAATTCGATGATATCGCGTTCCGCTTCACACCGTAACCACCCATCCCCCTATACGTCCATCAATTAAAAAATACTTACGACCAATACAAAAATCTTCTAATTGAATTTTCGAGCAGGTGGATCAATCGTGAGGTGTTACCATAAAACCTGTAAAGGGGCTCCACACTTTCCAGTTTGAGCTCAATTATCCTATACAAGATATCAAAAAAAGGTTAAGTGACAGAAA</canonical>
            <polymorphic>TACCGTGGGTACCAGTTCTACTCACCTCTATCCAGTTATGTCTCTCTCCAAGGAACCGATCCTCGAGTTGTCCGATATGGTAAGGACACAGTGATCCCATTCAGAAAGTATTGAATATATATATATATTCAGGCCGAGTTCAATCATCTGGTTCGCCAGCATCCAGAGAAAGTCATCGTCTTGGACTTCTTCGCCACGTGGTGTGGACCATGTAAGGCGATCGCTCCATTGTACAGGGAACTGGCCATCGAGTACAAGGGAGTCATCTTTTGCAAAGTCGATGTTGATGAAGCCGTTAGTAAATCTAGATAATTGCAGTTTGAAATTCTGTGTTTCAGGAAGACCTCTGCGCCAAGTACGACGTCAAGATGATGCCCACGTTCGTCTTCACCAAAAACGGAGAGACACTGGTAAGCGAGACGTTTATTGGGCTATGAATGGGAAGTTTGTCACTTGTGGAATTATGAGTCCTGTAAACGATTGTCAGTATTGATAATTCWATTAGAATCAGAAGTTCCATAAGATTTTAGATTTTTTTTTCTTATTGATACTGTAAAACCTGTAATAGCAAGGCCTCCTAACTTTTACTTTGAGGCGACTTTTCTCGGTTCCTGTCAAAGGTATGAAAAAGTTGTCAATTGATAAATTGTTTATCATAATATCAGACGTGTTTCGTCAGTTGACACAATCTTGATGTTTTGAATAGTAATTGAGAGAATTTAGTCCAAACTTGACAGTATTTGGGCCCTTCTAATACAGGTTTCACGTTAATGTGAATTCGATGATATCGCGTTCCGCTTCACACCGTAACCACCCATCCCCCTATACGTCCATCAATTAAAAAATACTTACGACCAATACAAAAATCTTCTAATTGAATTTTCGAGCAGGTGGATCAATCGTGAGGTGTTACCATAAAACCTGTAAAGGGGCTCCACACTTTCCAGTTTGAGCTCAATTATCCTATACAAGATATCAAAAAAAGGTTAAGTGACAGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>310 137 136 79 63 60 59 44 37 35 13 9 8 5 5</canonical_bands>
                <polymorphic_bands>310 142 136 79 63 60 59 44 37 35 13 9 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTCACTTGTGGAATTATGAGT</pcr_primer_p1>
		<pcr_primer_p2>GAAGATTTTTGTATTGGTCGTAA</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>TTGTCACTTGTGGAATTATGAGTCCTGTAAACGATTGTCAGTATTGATAATTCAATTAGAATCAGAAGTTCCATAAGATTTTAGATTTTTTTTTCTTATTGATACTGTAAAACCTGTAATAGCAAGGCCTCCTAACTTTTACTTTGAGGCGACTTTTCTCGGTTCCTGTCAAAGGTATGAAAAAGTTGTCAATTGATAAATTGTTTATCATAATATCAGACGTGTTTCGTCAGTTGACACAATCTTGATGTTTTGAATAGTAATTGAGAGAATTTAGTCCAAACTTGACAGTATTTGGGCCCTTCTAATACAGGTTTCACGTTAATGTGAATTCGATGATATCGCGTTCCGCTTCACACCGTAACCACCCATCCCCCTATACGTCCATCAATTAAAAAATACTTACGACCAATACAAAAATCTTC</canonical_amplicon>
		<polymorphic_amplicon>TTGTCACTTGTGGAATTATGAGTCCTGTAAACGATTGTCAGTATTGATAATTCWATTAGAATCAGAAGTTCCATAAGATTTTAGATTTTTTTTTCTTATTGATACTGTAAAACCTGTAATAGCAAGGCCTCCTAACTTTTACTTTGAGGCGACTTTTCTCGGTTCCTGTCAAAGGTATGAAAAAGTTGTCAATTGATAAATTGTTTATCATAATATCAGACGTGTTTCGTCAGTTGACACAATCTTGATGTTTTGAATAGTAATTGAGAGAATTTAGTCCAAACTTGACAGTATTTGGGCCCTTCTAATACAGGTTTCACGTTAATGTGAATTCGATGATATCGCGTTCCGCTTCACACCGTAACCACCCATCCCCCTATACGTCCATCAATTAAAAAATACTTACGACCAATACAAAAATCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22996</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>113266</contig_pos>
        <strand>+</strand>
        <context>tcacgTTAAT[C/G]TGAATTCGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTCCAAACTTGACAGTATTTGGGCCCTTCTAATACAGGTTTCACGTTAAT</left_flank>
        <right_flank>TGAATTCGATGATATCGCGTTCCGCTTCACACCGTAACCACCCATCCCCC</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGTCGATGTTGATGAAGCCGTTAGTAAATCTAGATAATTGCAGTTTGAAATTCTGTGTTTCAGGAAGACCTCTGCGCCAAGTACGACGTCAAGATGATGCCCACGTTCGTCTTCACCAAAAACGGAGAGACACTGGTAAGCGAGACGTTTATTGGGCTATGAATGGGAAGTTTGTCACTTGTGGAATTATGAGTCCTGTAAACGATTGTCAGTATTGATAATTCAATTAGAATCAGAAGTTCCATAAGATTTTAGATTTTTTTTTCTTATTGATACTGTAAAACCTGTAATAGCAAGGCCTCCTAACTTTTACTTTGAGGCGACTTTTCTCGGTTCCTGTCAAAGGTATGAAAAAGTTGTCAATTGATAAATTGTTTATCATAATATCAGACGTGTTTCGTCAGTTGACACAATCTTGATGTTTTGAATAGTAATTGAGAGAATTTAGTCCAAACTTGACAGTATTTGGGCCCTTCTAATACAGGTTTCACGTTAATGTGAATTCGATGATATCGCGTTCCGCTTCACACCGTAACCACCCATCCCCCTATACGTCCATCAATTAAAAAATACTTACGACCAATACAAAAATCTTCTAATTGAATTTTCGAGCAGGTGGATCAATCGTGAGGTGTTACCATAAAACCTGTAAAGGGGCTCCACACTTTCCAGTTTGAGCTCAATTATCCTATACAAGATATCAAAAAAAGGTTAAGTGACAGAAAATGTCTGATATAATGATTAAAAGTTTATCAGTTGACAGCTATTTTATATCTTCGACGAGACCTGAGAAAAATCGTCTCAAAATTAGAAAGAACTTCAATTACAGGTTTTACGGTAATAGTGAAATTCGGATCTCATTCTCTCGGATTTCTAGAAAACTATTCCCTCCAATCATATTATTTTGACCTTTACAGGAGACTCTGGAAGGTGGTGTCGAGGAGGAACTTCGCCGAAAAGTACGCGAGCACTCGTTGGCGGCTTCTTCCTCAGCCGTT</canonical>
            <polymorphic>AAAGTCGATGTTGATGAAGCCGTTAGTAAATCTAGATAATTGCAGTTTGAAATTCTGTGTTTCAGGAAGACCTCTGCGCCAAGTACGACGTCAAGATGATGCCCACGTTCGTCTTCACCAAAAACGGAGAGACACTGGTAAGCGAGACGTTTATTGGGCTATGAATGGGAAGTTTGTCACTTGTGGAATTATGAGTCCTGTAAACGATTGTCAGTATTGATAATTCAATTAGAATCAGAAGTTCCATAAGATTTTAGATTTTTTTTTCTTATTGATACTGTAAAACCTGTAATAGCAAGGCCTCCTAACTTTTACTTTGAGGCGACTTTTCTCGGTTCCTGTCAAAGGTATGAAAAAGTTGTCAATTGATAAATTGTTTATCATAATATCAGACGTGTTTCGTCAGTTGACACAATCTTGATGTTTTGAATAGTAATTGAGAGAATTTAGTCCAAACTTGACAGTATTTGGGCCCTTCTAATACAGGTTTCACGTTAATSTGAATTCGATGATATCGCGTTCCGCTTCACACCGTAACCACCCATCCCCCTATACGTCCATCAATTAAAAAATACTTACGACCAATACAAAAATCTTCTAATTGAATTTTCGAGCAGGTGGATCAATCGTGAGGTGTTACCATAAAACCTGTAAAGGGGCTCCACACTTTCCAGTTTGAGCTCAATTATCCTATACAAGATATCAAAAAAAGGTTAAGTGACAGAAAATGTCTGATATAATGATTAAAAGTTTATCAGTTGACAGCTATTTTATATCTTCGACGAGACCTGAGAAAAATCGTCTCAAAATTAGAAAGAACTTCAATTACAGGTTTTACGGTAATAGTGAAATTCGGATCTCATTCTCTCGGATTTCTAGAAAACTATTCCCTCCAATCATATTATTTTGACCTTTACAGGAGACTCTGGAAGGTGGTGTCGAGGAGGAACTTCGCCGAAAAGTACGCGAGCACTCGTTGGCGGCTTCTTCCTCAGCCGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>212 128 87 80 80 59 54 46 45 34 28 28 27 17 15 12 11 10 9 6 5 3 2 2</canonical_bands>
                <polymorphic_bands>212 128 87 80 80 59 54 46 45 37 34 28 28 17 15 12 11 9 6 5 3 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAAGTTCCATAAGATTTTAGATT</pcr_primer_p1>
		<pcr_primer_p2>GAAGATTTTTGTATTGGTCGTAA</pcr_primer_p2>
		<pcr_amplicon_size>363</pcr_amplicon_size>
		<canonical_amplicon>CAGAAGTTCCATAAGATTTTAGATTTTTTTTTCTTATTGATACTGTAAAACCTGTAATAGCAAGGCCTCCTAACTTTTACTTTGAGGCGACTTTTCTCGGTTCCTGTCAAAGGTATGAAAAAGTTGTCAATTGATAAATTGTTTATCATAATATCAGACGTGTTTCGTCAGTTGACACAATCTTGATGTTTTGAATAGTAATTGAGAGAATTTAGTCCAAACTTGACAGTATTTGGGCCCTTCTAATACAGGTTTCACGTTAATGTGAATTCGATGATATCGCGTTCCGCTTCACACCGTAACCACCCATCCCCCTATACGTCCATCAATTAAAAAATACTTACGACCAATACAAAAATCTTC</canonical_amplicon>
		<polymorphic_amplicon>CAGAAGTTCCATAAGATTTTAGATTTTTTTTTCTTATTGATACTGTAAAACCTGTAATAGCAAGGCCTCCTAACTTTTACTTTGAGGCGACTTTTCTCGGTTCCTGTCAAAGGTATGAAAAAGTTGTCAATTGATAAATTGTTTATCATAATATCAGACGTGTTTCGTCAGTTGACACAATCTTGATGTTTTGAATAGTAATTGAGAGAATTTAGTCCAAACTTGACAGTATTTGGGCCCTTCTAATACAGGTTTCACGTTAATSTGAATTCGATGATATCGCGTTCCGCTTCACACCGTAACCACCCATCCCCCTATACGTCCATCAATTAAAAAATACTTACGACCAATACAAAAATCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22997</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>113303</contig_pos>
        <strand>+</strand>
        <context>TCACACCGTA[A/G]CCACCCATCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTCACGTTAATGTGAATTCGATGATATCGCGTTCCGCTTCACACCGTA</left_flank>
        <right_flank>CCACCCATCCCCCTATACGTCCATCAATTAAAAAATACTTACGACCAATA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGCAGTTTGAAATTCTGTGTTTCAGGAAGACCTCTGCGCCAAGTACGACGTCAAGATGATGCCCACGTTCGTCTTCACCAAAAACGGAGAGACACTGGTAAGCGAGACGTTTATTGGGCTATGAATGGGAAGTTTGTCACTTGTGGAATTATGAGTCCTGTAAACGATTGTCAGTATTGATAATTCAATTAGAATCAGAAGTTCCATAAGATTTTAGATTTTTTTTTCTTATTGATACTGTAAAACCTGTAATAGCAAGGCCTCCTAACTTTTACTTTGAGGCGACTTTTCTCGGTTCCTGTCAAAGGTATGAAAAAGTTGTCAATTGATAAATTGTTTATCATAATATCAGACGTGTTTCGTCAGTTGACACAATCTTGATGTTTTGAATAGTAATTGAGAGAATTTAGTCCAAACTTGACAGTATTTGGGCCCTTCTAATACAGGTTTCACGTTAATGTGAATTCGATGATATCGCGTTCCGCTTCACACCGTAACCACCCATCCCCCTATACGTCCATCAATTAAAAAATACTTACGACCAATACAAAAATCTTCTAATTGAATTTTCGAGCAGGTGGATCAATCGTGAGGTGTTACCATAAAACCTGTAAAGGGGCTCCACACTTTCCAGTTTGAGCTCAATTATCCTATACAAGATATCAAAAAAAGGTTAAGTGACAGAAAATGTCTGATATAATGATTAAAAGTTTATCAGTTGACAGCTATTTTATATCTTCGACGAGACCTGAGAAAAATCGTCTCAAAATTAGAAAGAACTTCAATTACAGGTTTTACGGTAATAGTGAAATTCGGATCTCATTCTCTCGGATTTCTAGAAAACTATTCCCTCCAATCATATTATTTTGACCTTTACAGGAGACTCTGGAAGGTGGTGTCGAGGAGGAACTTCGCCGAAAAGTACGCGAGCACTCGTTGGCGGCTTCTTCCTCAGCCGTTGCTCATTGATCAGCGGCCATCTGTCCCCTAATAAATC</canonical>
            <polymorphic>AATTGCAGTTTGAAATTCTGTGTTTCAGGAAGACCTCTGCGCCAAGTACGACGTCAAGATGATGCCCACGTTCGTCTTCACCAAAAACGGAGAGACACTGGTAAGCGAGACGTTTATTGGGCTATGAATGGGAAGTTTGTCACTTGTGGAATTATGAGTCCTGTAAACGATTGTCAGTATTGATAATTCAATTAGAATCAGAAGTTCCATAAGATTTTAGATTTTTTTTTCTTATTGATACTGTAAAACCTGTAATAGCAAGGCCTCCTAACTTTTACTTTGAGGCGACTTTTCTCGGTTCCTGTCAAAGGTATGAAAAAGTTGTCAATTGATAAATTGTTTATCATAATATCAGACGTGTTTCGTCAGTTGACACAATCTTGATGTTTTGAATAGTAATTGAGAGAATTTAGTCCAAACTTGACAGTATTTGGGCCCTTCTAATACAGGTTTCACGTTAATGTGAATTCGATGATATCGCGTTCCGCTTCACACCGTARCCACCCATCCCCCTATACGTCCATCAATTAAAAAATACTTACGACCAATACAAAAATCTTCTAATTGAATTTTCGAGCAGGTGGATCAATCGTGAGGTGTTACCATAAAACCTGTAAAGGGGCTCCACACTTTCCAGTTTGAGCTCAATTATCCTATACAAGATATCAAAAAAAGGTTAAGTGACAGAAAATGTCTGATATAATGATTAAAAGTTTATCAGTTGACAGCTATTTTATATCTTCGACGAGACCTGAGAAAAATCGTCTCAAAATTAGAAAGAACTTCAATTACAGGTTTTACGGTAATAGTGAAATTCGGATCTCATTCTCTCGGATTTCTAGAAAACTATTCCCTCCAATCATATTATTTTGACCTTTACAGGAGACTCTGGAAGGTGGTGTCGAGGAGGAACTTCGCCGAAAAGTACGCGAGCACTCGTTGGCGGCTTCTTCCTCAGCCGTTGCTCATTGATCAGCGGCCATCTGTCCCCTAATAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>358 320 138 102 82</canonical_bands>
                <polymorphic_bands>460 320 138 82</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAAGTTCCATAAGATTTTAGATT</pcr_primer_p1>
		<pcr_primer_p2>GAAGATTTTTGTATTGGTCGTAA</pcr_primer_p2>
		<pcr_amplicon_size>363</pcr_amplicon_size>
		<canonical_amplicon>CAGAAGTTCCATAAGATTTTAGATTTTTTTTTCTTATTGATACTGTAAAACCTGTAATAGCAAGGCCTCCTAACTTTTACTTTGAGGCGACTTTTCTCGGTTCCTGTCAAAGGTATGAAAAAGTTGTCAATTGATAAATTGTTTATCATAATATCAGACGTGTTTCGTCAGTTGACACAATCTTGATGTTTTGAATAGTAATTGAGAGAATTTAGTCCAAACTTGACAGTATTTGGGCCCTTCTAATACAGGTTTCACGTTAATGTGAATTCGATGATATCGCGTTCCGCTTCACACCGTAACCACCCATCCCCCTATACGTCCATCAATTAAAAAATACTTACGACCAATACAAAAATCTTC</canonical_amplicon>
		<polymorphic_amplicon>CAGAAGTTCCATAAGATTTTAGATTTTTTTTTCTTATTGATACTGTAAAACCTGTAATAGCAAGGCCTCCTAACTTTTACTTTGAGGCGACTTTTCTCGGTTCCTGTCAAAGGTATGAAAAAGTTGTCAATTGATAAATTGTTTATCATAATATCAGACGTGTTTCGTCAGTTGACACAATCTTGATGTTTTGAATAGTAATTGAGAGAATTTAGTCCAAACTTGACAGTATTTGGGCCCTTCTAATACAGGTTTCACGTTAATGTGAATTCGATGATATCGCGTTCCGCTTCACACCGTARCCACCCATCCCCCTATACGTCCATCAATTAAAAAATACTTACGACCAATACAAAAATCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22998</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>113339</contig_pos>
        <strand>+</strand>
        <context>AATTAAAAAA[A/T]ACTTACGACC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGCTTCACACCGTAACCACCCATCCCCCTATACGTCCATCAATTAAAAAA</left_flank>
        <right_flank>ACTTACGACCAATACAAAAATCTTCTAATTGAATTTTCGAGCAGGTGGAT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGCGCCAAGTACGACGTCAAGATGATGCCCACGTTCGTCTTCACCAAAAACGGAGAGACACTGGTAAGCGAGACGTTTATTGGGCTATGAATGGGAAGTTTGTCACTTGTGGAATTATGAGTCCTGTAAACGATTGTCAGTATTGATAATTCAATTAGAATCAGAAGTTCCATAAGATTTTAGATTTTTTTTTCTTATTGATACTGTAAAACCTGTAATAGCAAGGCCTCCTAACTTTTACTTTGAGGCGACTTTTCTCGGTTCCTGTCAAAGGTATGAAAAAGTTGTCAATTGATAAATTGTTTATCATAATATCAGACGTGTTTCGTCAGTTGACACAATCTTGATGTTTTGAATAGTAATTGAGAGAATTTAGTCCAAACTTGACAGTATTTGGGCCCTTCTAATACAGGTTTCACGTTAATGTGAATTCGATGATATCGCGTTCCGCTTCACACCGTAACCACCCATCCCCCTATACGTCCATCAATTAAAAAATACTTACGACCAATACAAAAATCTTCTAATTGAATTTTCGAGCAGGTGGATCAATCGTGAGGTGTTACCATAAAACCTGTAAAGGGGCTCCACACTTTCCAGTTTGAGCTCAATTATCCTATACAAGATATCAAAAAAAGGTTAAGTGACAGAAAATGTCTGATATAATGATTAAAAGTTTATCAGTTGACAGCTATTTTATATCTTCGACGAGACCTGAGAAAAATCGTCTCAAAATTAGAAAGAACTTCAATTACAGGTTTTACGGTAATAGTGAAATTCGGATCTCATTCTCTCGGATTTCTAGAAAACTATTCCCTCCAATCATATTATTTTGACCTTTACAGGAGACTCTGGAAGGTGGTGTCGAGGAGGAACTTCGCCGAAAAGTACGCGAGCACTCGTTGGCGGCTTCTTCCTCAGCCGTTGCTCATTGATCAGCGGCCATCTGTCCCCTAATAAATCTGTTCATTGAACCCTTCCATTCCCTACAATTAACCC</canonical>
            <polymorphic>CTGCGCCAAGTACGACGTCAAGATGATGCCCACGTTCGTCTTCACCAAAAACGGAGAGACACTGGTAAGCGAGACGTTTATTGGGCTATGAATGGGAAGTTTGTCACTTGTGGAATTATGAGTCCTGTAAACGATTGTCAGTATTGATAATTCAATTAGAATCAGAAGTTCCATAAGATTTTAGATTTTTTTTTCTTATTGATACTGTAAAACCTGTAATAGCAAGGCCTCCTAACTTTTACTTTGAGGCGACTTTTCTCGGTTCCTGTCAAAGGTATGAAAAAGTTGTCAATTGATAAATTGTTTATCATAATATCAGACGTGTTTCGTCAGTTGACACAATCTTGATGTTTTGAATAGTAATTGAGAGAATTTAGTCCAAACTTGACAGTATTTGGGCCCTTCTAATACAGGTTTCACGTTAATGTGAATTCGATGATATCGCGTTCCGCTTCACACCGTAACCACCCATCCCCCTATACGTCCATCAATTAAAAAAWACTTACGACCAATACAAAAATCTTCTAATTGAATTTTCGAGCAGGTGGATCAATCGTGAGGTGTTACCATAAAACCTGTAAAGGGGCTCCACACTTTCCAGTTTGAGCTCAATTATCCTATACAAGATATCAAAAAAAGGTTAAGTGACAGAAAATGTCTGATATAATGATTAAAAGTTTATCAGTTGACAGCTATTTTATATCTTCGACGAGACCTGAGAAAAATCGTCTCAAAATTAGAAAGAACTTCAATTACAGGTTTTACGGTAATAGTGAAATTCGGATCTCATTCTCTCGGATTTCTAGAAAACTATTCCCTCCAATCATATTATTTTGACCTTTACAGGAGACTCTGGAAGGTGGTGTCGAGGAGGAACTTCGCCGAAAAGTACGCGAGCACTCGTTGGCGGCTTCTTCCTCAGCCGTTGCTCATTGATCAGCGGCCATCTGTCCCCTAATAAATCTGTTCATTGAACCCTTCCATTCCCTACAATTAACCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAAGTTCCATAAGATTTTAGATT</pcr_primer_p1>
		<pcr_primer_p2>ATGAGATCCGAATTTCACTATT</pcr_primer_p2>
		<pcr_amplicon_size>628</pcr_amplicon_size>
		<canonical_amplicon>CAGAAGTTCCATAAGATTTTAGATTTTTTTTTCTTATTGATACTGTAAAACCTGTAATAGCAAGGCCTCCTAACTTTTACTTTGAGGCGACTTTTCTCGGTTCCTGTCAAAGGTATGAAAAAGTTGTCAATTGATAAATTGTTTATCATAATATCAGACGTGTTTCGTCAGTTGACACAATCTTGATGTTTTGAATAGTAATTGAGAGAATTTAGTCCAAACTTGACAGTATTTGGGCCCTTCTAATACAGGTTTCACGTTAATGTGAATTCGATGATATCGCGTTCCGCTTCACACCGTAACCACCCATCCCCCTATACGTCCATCAATTAAAAAATACTTACGACCAATACAAAAATCTTCTAATTGAATTTTCGAGCAGGTGGATCAATCGTGAGGTGTTACCATAAAACCTGTAAAGGGGCTCCACACTTTCCAGTTTGAGCTCAATTATCCTATACAAGATATCAAAAAAAGGTTAAGTGACAGAAAATGTCTGATATAATGATTAAAAGTTTATCAGTTGACAGCTATTTTATATCTTCGACGAGACCTGAGAAAAATCGTCTCAAAATTAGAAAGAACTTCAATTACAGGTTTTACGGTAATAGTGAAATTCGGATCTCAT</canonical_amplicon>
		<polymorphic_amplicon>CAGAAGTTCCATAAGATTTTAGATTTTTTTTTCTTATTGATACTGTAAAACCTGTAATAGCAAGGCCTCCTAACTTTTACTTTGAGGCGACTTTTCTCGGTTCCTGTCAAAGGTATGAAAAAGTTGTCAATTGATAAATTGTTTATCATAATATCAGACGTGTTTCGTCAGTTGACACAATCTTGATGTTTTGAATAGTAATTGAGAGAATTTAGTCCAAACTTGACAGTATTTGGGCCCTTCTAATACAGGTTTCACGTTAATGTGAATTCGATGATATCGCGTTCCGCTTCACACCGTAACCACCCATCCCCCTATACGTCCATCAATTAAAAAAWACTTACGACCAATACAAAAATCTTCTAATTGAATTTTCGAGCAGGTGGATCAATCGTGAGGTGTTACCATAAAACCTGTAAAGGGGCTCCACACTTTCCAGTTTGAGCTCAATTATCCTATACAAGATATCAAAAAAAGGTTAAGTGACAGAAAATGTCTGATATAATGATTAAAAGTTTATCAGTTGACAGCTATTTTATATCTTCGACGAGACCTGAGAAAAATCGTCTCAAAATTAGAAAGAACTTCAATTACAGGTTTTACGGTAATAGTGAAATTCGGATCTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb22999</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>113384</contig_pos>
        <strand>+</strand>
        <context>TTTCGAGCAG[G/T]TGGATCAATC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAATACTTACGACCAATACAAAAATCTTCTAATTGAATTTTCGAGCAG</left_flank>
        <right_flank>TGGATCAATCGTGAGGTGTTACCATAAAACCTGTAAAGGGGCTCCACACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAAACGGAGAGACACTGGTAAGCGAGACGTTTATTGGGCTATGAATGGGAAGTTTGTCACTTGTGGAATTATGAGTCCTGTAAACGATTGTCAGTATTGATAATTCAATTAGAATCAGAAGTTCCATAAGATTTTAGATTTTTTTTTCTTATTGATACTGTAAAACCTGTAATAGCAAGGCCTCCTAACTTTTACTTTGAGGCGACTTTTCTCGGTTCCTGTCAAAGGTATGAAAAAGTTGTCAATTGATAAATTGTTTATCATAATATCAGACGTGTTTCGTCAGTTGACACAATCTTGATGTTTTGAATAGTAATTGAGAGAATTTAGTCCAAACTTGACAGTATTTGGGCCCTTCTAATACAGGTTTCACGTTAATGTGAATTCGATGATATCGCGTTCCGCTTCACACCGTAACCACCCATCCCCCTATACGTCCATCAATTAAAAAATACTTACGACCAATACAAAAATCTTCTAATTGAATTTTCGAGCAGGTGGATCAATCGTGAGGTGTTACCATAAAACCTGTAAAGGGGCTCCACACTTTCCAGTTTGAGCTCAATTATCCTATACAAGATATCAAAAAAAGGTTAAGTGACAGAAAATGTCTGATATAATGATTAAAAGTTTATCAGTTGACAGCTATTTTATATCTTCGACGAGACCTGAGAAAAATCGTCTCAAAATTAGAAAGAACTTCAATTACAGGTTTTACGGTAATAGTGAAATTCGGATCTCATTCTCTCGGATTTCTAGAAAACTATTCCCTCCAATCATATTATTTTGACCTTTACAGGAGACTCTGGAAGGTGGTGTCGAGGAGGAACTTCGCCGAAAAGTACGCGAGCACTCGTTGGCGGCTTCTTCCTCAGCCGTTGCTCATTGATCAGCGGCCATCTGTCCCCTAATAAATCTGTTCATTGAACCCTTCCATTCCCTACAATTAACCCTTGCCAGTCGACACAAATTGGTCTCAGTTCGACGTTCGACGTTCG</canonical>
            <polymorphic>CAAAAACGGAGAGACACTGGTAAGCGAGACGTTTATTGGGCTATGAATGGGAAGTTTGTCACTTGTGGAATTATGAGTCCTGTAAACGATTGTCAGTATTGATAATTCAATTAGAATCAGAAGTTCCATAAGATTTTAGATTTTTTTTTCTTATTGATACTGTAAAACCTGTAATAGCAAGGCCTCCTAACTTTTACTTTGAGGCGACTTTTCTCGGTTCCTGTCAAAGGTATGAAAAAGTTGTCAATTGATAAATTGTTTATCATAATATCAGACGTGTTTCGTCAGTTGACACAATCTTGATGTTTTGAATAGTAATTGAGAGAATTTAGTCCAAACTTGACAGTATTTGGGCCCTTCTAATACAGGTTTCACGTTAATGTGAATTCGATGATATCGCGTTCCGCTTCACACCGTAACCACCCATCCCCCTATACGTCCATCAATTAAAAAATACTTACGACCAATACAAAAATCTTCTAATTGAATTTTCGAGCAGKTGGATCAATCGTGAGGTGTTACCATAAAACCTGTAAAGGGGCTCCACACTTTCCAGTTTGAGCTCAATTATCCTATACAAGATATCAAAAAAAGGTTAAGTGACAGAAAATGTCTGATATAATGATTAAAAGTTTATCAGTTGACAGCTATTTTATATCTTCGACGAGACCTGAGAAAAATCGTCTCAAAATTAGAAAGAACTTCAATTACAGGTTTTACGGTAATAGTGAAATTCGGATCTCATTCTCTCGGATTTCTAGAAAACTATTCCCTCCAATCATATTATTTTGACCTTTACAGGAGACTCTGGAAGGTGGTGTCGAGGAGGAACTTCGCCGAAAAGTACGCGAGCACTCGTTGGCGGCTTCTTCCTCAGCCGTTGCTCATTGATCAGCGGCCATCTGTCCCCTAATAAATCTGTTCATTGAACCCTTCCATTCCCTACAATTAACCCTTGCCAGTCGACACAAATTGGTCTCAGTTCGACGTTCGACGTTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>212 128 114 87 80 80 54 45 34 32 28 27 16 15 11 10 9 6 5 3 2 2</canonical_bands>
                <polymorphic_bands>212 128 114 91 87 80 54 45 34 32 28 27 16 15 10 9 6 5 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTATACGTCCATCAATTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATGAGATCCGAATTTCACTATT</pcr_primer_p2>
		<pcr_amplicon_size>315</pcr_amplicon_size>
		<canonical_amplicon>CCTATACGTCCATCAATTAAAAAATACTTACGACCAATACAAAAATCTTCTAATTGAATTTTCGAGCAGGTGGATCAATCGTGAGGTGTTACCATAAAACCTGTAAAGGGGCTCCACACTTTCCAGTTTGAGCTCAATTATCCTATACAAGATATCAAAAAAAGGTTAAGTGACAGAAAATGTCTGATATAATGATTAAAAGTTTATCAGTTGACAGCTATTTTATATCTTCGACGAGACCTGAGAAAAATCGTCTCAAAATTAGAAAGAACTTCAATTACAGGTTTTACGGTAATAGTGAAATTCGGATCTCAT</canonical_amplicon>
		<polymorphic_amplicon>CCTATACGTCCATCAATTAAAAAATACTTACGACCAATACAAAAATCTTCTAATTGAATTTTCGAGCAGKTGGATCAATCGTGAGGTGTTACCATAAAACCTGTAAAGGGGCTCCACACTTTCCAGTTTGAGCTCAATTATCCTATACAAGATATCAAAAAAAGGTTAAGTGACAGAAAATGTCTGATATAATGATTAAAAGTTTATCAGTTGACAGCTATTTTATATCTTCGACGAGACCTGAGAAAAATCGTCTCAAAATTAGAAAGAACTTCAATTACAGGTTTTACGGTAATAGTGAAATTCGGATCTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23000</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>115637</contig_pos>
        <strand>+</strand>
        <context>GTAMGGAAAA[A/G]GAAGAAAAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAGGGAGTTGCGGCGGACGGGTTTGCTAAAAATTTGAAGTAAGGAAAA</left_flank>
        <right_flank>GAAGAAAAGGAAGGAATCATACAATGCAGGAGCAGCATTTTGACGGAGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTAATCAATTCCGAAAATCAAGTTGGAATATTCGAGACCAGCCTGAAACAGATAGATTAGAGTGATTACGGGAACCCCGGATAGTATAATAGTGAAAAATGAATGAAGTTGGTCCGAAATAGTGCAGGAGACATGCTAATAAAAGATACAGAGTTACTGTACTGTATGTGCATAGAGAGAAATAGAGAAAGGGAAAGTATATTTTGTGAGAAGAGTAGTGGATATGAAACTTGCCGTTGAAAAATCGCCGATGTAGGTCTGAATGGAATTAGGTGTTCAAGTGGGAGTGATTATCTCTATCTAGTCTACTTCACACATCACTCTATTAGATCTATTAATTTGAATTCTGAAAAAGTCTAAATAACCCACATGCTTGATAGCCTTCACAATATCGTCAAGAGTTTTGAAATGAGGAATGTTGTGAGGACTTCCAATAGCAAGAGCCTGAAGAAGGGAGTTGCGGCGGACGGGTTTGCTAAAAATTTGAAGTAAGGAAAAGGAAGAAAAGGAAGGAATCATACAATGCAGGAGCAGCATTTTGACGGAGATCTCTACTACGTCTTTCTCTCTCCTTCTTCATTGGCTTCTTGATGATGGACGGTTTCTGGAAGGCTGGCTCGACCTGCAATATGGAATTTTACGGTTTTCTTAAGTTAACTACAGTACCTTTTCATTCTACAGTAATATTTCCCAAGCTACAGAATACCCTATAACGTTCTCTAGAAACTTCATTAGTTTTCAGACTACAGTAATCCTCTTTTCTCTTAACAGTAATCCTCTTTTCTCTTTTCTCTTGCCTCTATTTCTACAATAACCCATCTTACAGTTCTGACTATAAATATATGAAAAACGCGTTTTTCAGATGATTTTGAACAAAGATTTTGAGAAGAAAGACTTTTTCATATATTTATGGACAGCACTTTATACACGGAAATTCTGAGCTTATTCTGATAGCTACAGTTATCTGTTTTTTTAGAAAATGATATCTAGAGCATAGCT</canonical>
            <polymorphic>TGTAATCAATTCCGAAAATCAAGTTGGAATATTCGAGACCAGCCTGAAACAGATAGATTAGAGTGATTACGGGAACCCCGGATAGTATAATAGTGAAAAATGAATGAAGTTGGTCCGAAATAGTGCAGGAGACATGCTAATAAAAGATACAGAGTTACTGTACTGTATGTGCATAGAGAGAAATAGAGAAAGGGAAAGTATATTTTGTGAGAAGAGTAGTGGATATGAAACTTGCCGTTGAAAAATCGCCGATGTAGGTCTGAATGGAATTAGGTGTTCAAGTGGGAGTGATTATCTCTATCTAGTCTACTTCACACATCACTCTATTAGATCTATTAATTTGAATTCTGAAAAAGTCTAAATAACCCACATGCTTGATAGCCTTCACAATATCGTCAAGAGTTTTGAAATGAGGAATGTTGTGAGGACTTCCAATAGCAAGAGCCTGAAGAAGGGAGTTGCGGCGGACGGGTTTGCTAAAAATTTGAAGTAAGGAAAARGAAGAAAAGGAAGGAATCATACAATGCAGGAGCAGCATTTTGACGGAGATCTCTACTACGTCTTTCTCTCTCCTTCTTCATTGGCTTCTTGATGATGGACGGTTTCTGGAAGGCTGGCTCGACCTGCAATATGGAATTTTACGGTTTTCTTAAGTTAACTACAGTACCTTTTCATTCTACAGTAATATTTCCCAAGCTACAGAATACCCTATAACGTTCTCTAGAAACTTCATTAGTTTTCAGACTACAGTAATCCTCTTTTCTCTTAACAGTAATCCTCTTTTCTCTTTTCTCTTGCCTCTATTTCTACAATAACCCATCTTACAGTTCTGACTATAAATATATGAAAAACGCGTTTTTCAGATGATTTTGAACAAAGATTTTGAGAAGAAAGACTTTTTCATATATTTATGGACAGCACTTTATACACGGAAATTCTGAGCTTATTCTGATAGCTACAGTTATCTGTTTTTTTAGAAAATGATATCTAGAGCATAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTGAAATGAGGAATGTTGT</pcr_primer_p1>
		<pcr_primer_p2>TAAGAAAACCGTAAAATTCCATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTTTTGAAATGAGGAATGTTGTGAGGACTTCCAATAGCAAGAGCCTGAAGAAGGGAGTTGCGGCGGACGGGTTTGCTAAAAATTTGAAGTAAGGAAAAGGAAGAAAAGGAAGGAATCATACAATGCAGGAGCAGCATTTTGACGGAGATCTCTACTACGTCTTTCTCTCTCCTTCTTCATTGGCTTCTTGATGATGGACGGTTTCTGGAAGGCTGGCTCGACCTGCAATATGGAATTTTACGGTTTTCTTA</canonical_amplicon>
		<polymorphic_amplicon>GTTTTGAAATGAGGAATGTTGTGAGGACTTCCAATAGCAAGAGCCTGAAGAAGGGAGTTGCGGCGGACGGGTTTGCTAAAAATTTGAAGTAAGGAAAARGAAGAAAAGGAAGGAATCATACAATGCAGGAGCAGCATTTTGACGGAGATCTCTACTACGTCTTTCTCTCTCCTTCTTCATTGGCTTCTTGATGATGGACGGTTTCTGGAAGGCTGGCTCGACCTGCAATATGGAATTTTACGGTTTTCTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23001</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>115630</contig_pos>
        <strand>+</strand>
        <context>ATTTGAAGTA[A/C]GGAAAARGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGCCTGAAGAAGGGAGTTGCGGCGGACGGGTTTGCTAAAAATTTGAAGTA</left_flank>
        <right_flank>GGAAAAGGAAGAAAAGGAAGGAATCATACAATGCAGGAGCAGCATTTTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTGGTGTAATCAATTCCGAAAATCAAGTTGGAATATTCGAGACCAGCCTGAAACAGATAGATTAGAGTGATTACGGGAACCCCGGATAGTATAATAGTGAAAAATGAATGAAGTTGGTCCGAAATAGTGCAGGAGACATGCTAATAAAAGATACAGAGTTACTGTACTGTATGTGCATAGAGAGAAATAGAGAAAGGGAAAGTATATTTTGTGAGAAGAGTAGTGGATATGAAACTTGCCGTTGAAAAATCGCCGATGTAGGTCTGAATGGAATTAGGTGTTCAAGTGGGAGTGATTATCTCTATCTAGTCTACTTCACACATCACTCTATTAGATCTATTAATTTGAATTCTGAAAAAGTCTAAATAACCCACATGCTTGATAGCCTTCACAATATCGTCAAGAGTTTTGAAATGAGGAATGTTGTGAGGACTTCCAATAGCAAGAGCCTGAAGAAGGGAGTTGCGGCGGACGGGTTTGCTAAAAATTTGAAGTAAGGAAAAGGAAGAAAAGGAAGGAATCATACAATGCAGGAGCAGCATTTTGACGGAGATCTCTACTACGTCTTTCTCTCTCCTTCTTCATTGGCTTCTTGATGATGGACGGTTTCTGGAAGGCTGGCTCGACCTGCAATATGGAATTTTACGGTTTTCTTAAGTTAACTACAGTACCTTTTCATTCTACAGTAATATTTCCCAAGCTACAGAATACCCTATAACGTTCTCTAGAAACTTCATTAGTTTTCAGACTACAGTAATCCTCTTTTCTCTTAACAGTAATCCTCTTTTCTCTTTTCTCTTGCCTCTATTTCTACAATAACCCATCTTACAGTTCTGACTATAAATATATGAAAAACGCGTTTTTCAGATGATTTTGAACAAAGATTTTGAGAAGAAAGACTTTTTCATATATTTATGGACAGCACTTTATACACGGAAATTCTGAGCTTATTCTGATAGCTACAGTTATCTGTTTTTTTAGAAAATGATATCTAGAG</canonical>
            <polymorphic>GATTTGGTGTAATCAATTCCGAAAATCAAGTTGGAATATTCGAGACCAGCCTGAAACAGATAGATTAGAGTGATTACGGGAACCCCGGATAGTATAATAGTGAAAAATGAATGAAGTTGGTCCGAAATAGTGCAGGAGACATGCTAATAAAAGATACAGAGTTACTGTACTGTATGTGCATAGAGAGAAATAGAGAAAGGGAAAGTATATTTTGTGAGAAGAGTAGTGGATATGAAACTTGCCGTTGAAAAATCGCCGATGTAGGTCTGAATGGAATTAGGTGTTCAAGTGGGAGTGATTATCTCTATCTAGTCTACTTCACACATCACTCTATTAGATCTATTAATTTGAATTCTGAAAAAGTCTAAATAACCCACATGCTTGATAGCCTTCACAATATCGTCAAGAGTTTTGAAATGAGGAATGTTGTGAGGACTTCCAATAGCAAGAGCCTGAAGAAGGGAGTTGCGGCGGACGGGTTTGCTAAAAATTTGAAGTAMGGAAAAGGAAGAAAAGGAAGGAATCATACAATGCAGGAGCAGCATTTTGACGGAGATCTCTACTACGTCTTTCTCTCTCCTTCTTCATTGGCTTCTTGATGATGGACGGTTTCTGGAAGGCTGGCTCGACCTGCAATATGGAATTTTACGGTTTTCTTAAGTTAACTACAGTACCTTTTCATTCTACAGTAATATTTCCCAAGCTACAGAATACCCTATAACGTTCTCTAGAAACTTCATTAGTTTTCAGACTACAGTAATCCTCTTTTCTCTTAACAGTAATCCTCTTTTCTCTTTTCTCTTGCCTCTATTTCTACAATAACCCATCTTACAGTTCTGACTATAAATATATGAAAAACGCGTTTTTCAGATGATTTTGAACAAAGATTTTGAGAAGAAAGACTTTTTCATATATTTATGGACAGCACTTTATACACGGAAATTCTGAGCTTATTCTGATAGCTACAGTTATCTGTTTTTTTAGAAAATGATATCTAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTGAAATGAGGAATGTTGT</pcr_primer_p1>
		<pcr_primer_p2>TAAGAAAACCGTAAAATTCCATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTTTTGAAATGAGGAATGTTGTGAGGACTTCCAATAGCAAGAGCCTGAAGAAGGGAGTTGCGGCGGACGGGTTTGCTAAAAATTTGAAGTAAGGAAAAGGAAGAAAAGGAAGGAATCATACAATGCAGGAGCAGCATTTTGACGGAGATCTCTACTACGTCTTTCTCTCTCCTTCTTCATTGGCTTCTTGATGATGGACGGTTTCTGGAAGGCTGGCTCGACCTGCAATATGGAATTTTACGGTTTTCTTA</canonical_amplicon>
		<polymorphic_amplicon>GTTTTGAAATGAGGAATGTTGTGAGGACTTCCAATAGCAAGAGCCTGAAGAAGGGAGTTGCGGCGGACGGGTTTGCTAAAAATTTGAAGTAMGGAAAAGGAAGAAAAGGAAGGAATCATACAATGCAGGAGCAGCATTTTGACGGAGATCTCTACTACGTCTTTCTCTCTCCTTCTTCATTGGCTTCTTGATGATGGACGGTTTCTGGAAGGCTGGCTCGACCTGCAATATGGAATTTTACGGTTTTCTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23002</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>115495</contig_pos>
        <strand>+</strand>
        <context>CTGAAAAAGT[C/G]TAAATAACCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TACTTCACACATCACTCTATTAGATCTATTAATTTGAATTCTGAAAAAGT</left_flank>
        <right_flank>TAAATAACCCACATGCTTGATAGCCTTCACAATATCGTCAAGAGTTTTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTTTCAAGGACCATCAGACCGAGCCCTGATTTTTCAAGGTTGTATTATACCTGTTGATAGGGATTCATCTCAGCTGGATCAATTGTGTGAAGTGGTCTCTTATCGAAAGTTCGTTCTCCTTGATAGAAGTTAGATTTGGTGTAATCAATTCCGAAAATCAAGTTGGAATATTCGAGACCAGCCTGAAACAGATAGATTAGAGTGATTACGGGAACCCCGGATAGTATAATAGTGAAAAATGAATGAAGTTGGTCCGAAATAGTGCAGGAGACATGCTAATAAAAGATACAGAGTTACTGTACTGTATGTGCATAGAGAGAAATAGAGAAAGGGAAAGTATATTTTGTGAGAAGAGTAGTGGATATGAAACTTGCCGTTGAAAAATCGCCGATGTAGGTCTGAATGGAATTAGGTGTTCAAGTGGGAGTGATTATCTCTATCTAGTCTACTTCACACATCACTCTATTAGATCTATTAATTTGAATTCTGAAAAAGTCTAAATAACCCACATGCTTGATAGCCTTCACAATATCGTCAAGAGTTTTGAAATGAGGAATGTTGTGAGGACTTCCAATAGCAAGAGCCTGAAGAAGGGAGTTGCGGCGGACGGGTTTGCTAAAAATTTGAAGTAAGGAAAAGGAAGAAAAGGAAGGAATCATACAATGCAGGAGCAGCATTTTGACGGAGATCTCTACTACGTCTTTCTCTCTCCTTCTTCATTGGCTTCTTGATGATGGACGGTTTCTGGAAGGCTGGCTCGACCTGCAATATGGAATTTTACGGTTTTCTTAAGTTAACTACAGTACCTTTTCATTCTACAGTAATATTTCCCAAGCTACAGAATACCCTATAACGTTCTCTAGAAACTTCATTAGTTTTCAGACTACAGTAATCCTCTTTTCTCTTAACAGTAATCCTCTTTTCTCTTTTCTCTTGCCTCTATTTCTACAATAACCCATCTTACAGTTCTGACTATAAATATATGAAAAACGCGTTT</canonical>
            <polymorphic>GAATTTTCAAGGACCATCAGACCGAGCCCTGATTTTTCAAGGTTGTATTATACCTGTTGATAGGGATTCATCTCAGCTGGATCAATTGTGTGAAGTGGTCTCTTATCGAAAGTTCGTTCTCCTTGATAGAAGTTAGATTTGGTGTAATCAATTCCGAAAATCAAGTTGGAATATTCGAGACCAGCCTGAAACAGATAGATTAGAGTGATTACGGGAACCCCGGATAGTATAATAGTGAAAAATGAATGAAGTTGGTCCGAAATAGTGCAGGAGACATGCTAATAAAAGATACAGAGTTACTGTACTGTATGTGCATAGAGAGAAATAGAGAAAGGGAAAGTATATTTTGTGAGAAGAGTAGTGGATATGAAACTTGCCGTTGAAAAATCGCCGATGTAGGTCTGAATGGAATTAGGTGTTCAAGTGGGAGTGATTATCTCTATCTAGTCTACTTCACACATCACTCTATTAGATCTATTAATTTGAATTCTGAAAAAGTSTAAATAACCCACATGCTTGATAGCCTTCACAATATCGTCAAGAGTTTTGAAATGAGGAATGTTGTGAGGACTTCCAATAGCAAGAGCCTGAAGAAGGGAGTTGCGGCGGACGGGTTTGCTAAAAATTTGAAGTAAGGAAAAGGAAGAAAAGGAAGGAATCATACAATGCAGGAGCAGCATTTTGACGGAGATCTCTACTACGTCTTTCTCTCTCCTTCTTCATTGGCTTCTTGATGATGGACGGTTTCTGGAAGGCTGGCTCGACCTGCAATATGGAATTTTACGGTTTTCTTAAGTTAACTACAGTACCTTTTCATTCTACAGTAATATTTCCCAAGCTACAGAATACCCTATAACGTTCTCTAGAAACTTCATTAGTTTTCAGACTACAGTAATCCTCTTTTCTCTTAACAGTAATCCTCTTTTCTCTTTTCTCTTGCCTCTATTTCTACAATAACCCATCTTACAGTTCTGACTATAAATATATGAAAAACGCGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCAAGTGGGAGTGATTATCT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTATGATTCCTTCCTTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTCAAGTGGGAGTGATTATCTCTATCTAGTCTACTTCACACATCACTCTATTAGATCTATTAATTTGAATTCTGAAAAAGTCTAAATAACCCACATGCTTGATAGCCTTCACAATATCGTCAAGAGTTTTGAAATGAGGAATGTTGTGAGGACTTCCAATAGCAAGAGCCTGAAGAAGGGAGTTGCGGCGGACGGGTTTGCTAAAAATTTGAAGTAAGGAAAAGGAAGAAAAGGAAGGAATCATACAAT</canonical_amplicon>
		<polymorphic_amplicon>GTTCAAGTGGGAGTGATTATCTCTATCTAGTCTACTTCACACATCACTCTATTAGATCTATTAATTTGAATTCTGAAAAAGTSTAAATAACCCACATGCTTGATAGCCTTCACAATATCGTCAAGAGTTTTGAAATGAGGAATGTTGTGAGGACTTCCAATAGCAAGAGCCTGAAGAAGGGAGTTGCGGCGGACGGGTTTGCTAAAAATTTGAAGTAAGGAAAAGGAAGAAAAGGAAGGAATCATACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23003</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>115410</contig_pos>
        <strand>+</strand>
        <context>AATGGAATTA[A/G]GTGTTCAAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATGAAACTTGCCGTTGAAAAATCGCCGATGTAGGTCTGAATGGAATTA</left_flank>
        <right_flank>GTGTTCAAGTGGGAGTGATTATCTCTATCTAGTCTACTTCACACATCACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGATTTGGATTACCTGAATATTCGGTTTTAATGATTATTCCAGATCACTATGCCATGGGCCCGAGAGGCTGGGCTTTTTTTCCAGAATTTTCAAGGACCATCAGACCGAGCCCTGATTTTTCAAGGTTGTATTATACCTGTTGATAGGGATTCATCTCAGCTGGATCAATTGTGTGAAGTGGTCTCTTATCGAAAGTTCGTTCTCCTTGATAGAAGTTAGATTTGGTGTAATCAATTCCGAAAATCAAGTTGGAATATTCGAGACCAGCCTGAAACAGATAGATTAGAGTGATTACGGGAACCCCGGATAGTATAATAGTGAAAAATGAATGAAGTTGGTCCGAAATAGTGCAGGAGACATGCTAATAAAAGATACAGAGTTACTGTACTGTATGTGCATAGAGAGAAATAGAGAAAGGGAAAGTATATTTTGTGAGAAGAGTAGTGGATATGAAACTTGCCGTTGAAAAATCGCCGATGTAGGTCTGAATGGAATTAGGTGTTCAAGTGGGAGTGATTATCTCTATCTAGTCTACTTCACACATCACTCTATTAGATCTATTAATTTGAATTCTGAAAAAGTCTAAATAACCCACATGCTTGATAGCCTTCACAATATCGTCAAGAGTTTTGAAATGAGGAATGTTGTGAGGACTTCCAATAGCAAGAGCCTGAAGAAGGGAGTTGCGGCGGACGGGTTTGCTAAAAATTTGAAGTAAGGAAAAGGAAGAAAAGGAAGGAATCATACAATGCAGGAGCAGCATTTTGACGGAGATCTCTACTACGTCTTTCTCTCTCCTTCTTCATTGGCTTCTTGATGATGGACGGTTTCTGGAAGGCTGGCTCGACCTGCAATATGGAATTTTACGGTTTTCTTAAGTTAACTACAGTACCTTTTCATTCTACAGTAATATTTCCCAAGCTACAGAATACCCTATAACGTTCTCTAGAAACTTCATTAGTTTTCAGACTACAGTAATCCTCTTTTCTCTTAACAGT</canonical>
            <polymorphic>ACGATTTGGATTACCTGAATATTCGGTTTTAATGATTATTCCAGATCACTATGCCATGGGCCCGAGAGGCTGGGCTTTTTTTCCAGAATTTTCAAGGACCATCAGACCGAGCCCTGATTTTTCAAGGTTGTATTATACCTGTTGATAGGGATTCATCTCAGCTGGATCAATTGTGTGAAGTGGTCTCTTATCGAAAGTTCGTTCTCCTTGATAGAAGTTAGATTTGGTGTAATCAATTCCGAAAATCAAGTTGGAATATTCGAGACCAGCCTGAAACAGATAGATTAGAGTGATTACGGGAACCCCGGATAGTATAATAGTGAAAAATGAATGAAGTTGGTCCGAAATAGTGCAGGAGACATGCTAATAAAAGATACAGAGTTACTGTACTGTATGTGCATAGAGAGAAATAGAGAAAGGGAAAGTATATTTTGTGAGAAGAGTAGTGGATATGAAACTTGCCGTTGAAAAATCGCCGATGTAGGTCTGAATGGAATTARGTGTTCAAGTGGGAGTGATTATCTCTATCTAGTCTACTTCACACATCACTCTATTAGATCTATTAATTTGAATTCTGAAAAAGTCTAAATAACCCACATGCTTGATAGCCTTCACAATATCGTCAAGAGTTTTGAAATGAGGAATGTTGTGAGGACTTCCAATAGCAAGAGCCTGAAGAAGGGAGTTGCGGCGGACGGGTTTGCTAAAAATTTGAAGTAAGGAAAAGGAAGAAAAGGAAGGAATCATACAATGCAGGAGCAGCATTTTGACGGAGATCTCTACTACGTCTTTCTCTCTCCTTCTTCATTGGCTTCTTGATGATGGACGGTTTCTGGAAGGCTGGCTCGACCTGCAATATGGAATTTTACGGTTTTCTTAAGTTAACTACAGTACCTTTTCATTCTACAGTAATATTTCCCAAGCTACAGAATACCCTATAACGTTCTCTAGAAACTTCATTAGTTTTCAGACTACAGTAATCCTCTTTTCTCTTAACAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAGAAATAGAGAAAGGGAAAG</pcr_primer_p1>
		<pcr_primer_p2>ACATTCCTCATTTCAAAACTCTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAGAGAAATAGAGAAAGGGAAAGTATATTTTGTGAGAAGAGTAGTGGATATGAAACTTGCCGTTGAAAAATCGCCGATGTAGGTCTGAATGGAATTAGGTGTTCAAGTGGGAGTGATTATCTCTATCTAGTCTACTTCACACATCACTCTATTAGATCTATTAATTTGAATTCTGAAAAAGTCTAAATAACCCACATGCTTGATAGCCTTCACAATATCGTCAAGAGTTTTGAAATGAGGAATGT</canonical_amplicon>
		<polymorphic_amplicon>GAGAGAAATAGAGAAAGGGAAAGTATATTTTGTGAGAAGAGTAGTGGATATGAAACTTGCCGTTGAAAAATCGCCGATGTAGGTCTGAATGGAATTARGTGTTCAAGTGGGAGTGATTATCTCTATCTAGTCTACTTCACACATCACTCTATTAGATCTATTAATTTGAATTCTGAAAAAGTCTAAATAACCCACATGCTTGATAGCCTTCACAATATCGTCAAGAGTTTTGAAATGAGGAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23004</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>140290</contig_pos>
        <strand>+</strand>
        <context>GCCTAAAATT[C/T]TTGGAATTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAACAGCGACTTTCGTCGACGTTAGGGTATCACTGAAAATGCCTAAAATT</left_flank>
        <right_flank>TTGGAATTTCTTCAAAAATAACAACTCACGGTGGTGACGGTGATCCTGAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCACTCACTTTCACGATTGTTCGATCTTCGAACTCTATCAATCGTTGCATAATCGTCCTCATCAAGGTTCGTATTCACCATTAAATTTGGTTGTTGATGACGACGATACTCCTCATGGGAGTGTGTTCTTCCCTGAAAAAAAGTTTGGTTTGAATGAAGTTCTACGAACTCCCTATTCCTTAAAAATCAAAAACTCACCCCGGATCTTCTTTCAGATCGTTGCAATAACTCCTGTTCGCGTTGTTTCGCGGTTTTTCGTTCGCTTCGCGCATCGATCACGTCTTCAGCGAGATTCTGTTGACTATTGTTACTTCCAGAACCGCCGAACCATCGAGTGAAGAATCCTCCTCCACTCGATGCTTGTCTCTTATCCATTTTCTTCTTTTTCTCCTTCTCCTTTTTCAATTCCTTCTTGTGATCTTTGATCTTCTTGGCTTCCGATGCTGAGCTAACAGCGACTTTCGTCGACGTTAGGGTATCACTGAAAATGCCTAAAATTTTTGGAATTTCTTCAAAAATAACAACTCACGGTGGTGACGGTGATCCTGATCCTCTCAGCGGTCTGAAGCCAGGTTTGCGCGTTCCTCTTTCTCTACAACAACTTGGATTATTGCCTTCTTTGTCTATATAGTCAAGTTTCCGTTCTACAACGAGTGGCGGCGTGTGCAACGGTTCGACATCACTTTGTACATTCAACGAAGTCTCCCACATTGACATGCGTTTATAGTTGGCACTGGACGATACGAGTGACGGAACAGCGACATGTGGGACAGACGAGGATCGTGATTTTGAGAGTTTTTTATTGTAAACAGGTTTTGGAATATGTATAAGACCCGGCACCTCATAAGGTAAATCACGTCCATCGTCATCGGCTATTGTCGGTTCGCGGATCTGTTTTTTCTGTCCACGAACCGCCCGACCACCTGCTACACATTTACAAAGACAACAACGACAACACACACAAACCATCCAACTGATCTGGAACAAGATGGATTGAATA</canonical>
            <polymorphic>CCACTCACTTTCACGATTGTTCGATCTTCGAACTCTATCAATCGTTGCATAATCGTCCTCATCAAGGTTCGTATTCACCATTAAATTTGGTTGTTGATGACGACGATACTCCTCATGGGAGTGTGTTCTTCCCTGAAAAAAAGTTTGGTTTGAATGAAGTTCTACGAACTCCCTATTCCTTAAAAATCAAAAACTCACCCCGGATCTTCTTTCAGATCGTTGCAATAACTCCTGTTCGCGTTGTTTCGCGGTTTTTCGTTCGCTTCGCGCATCGATCACGTCTTCAGCGAGATTCTGTTGACTATTGTTACTTCCAGAACCGCCGAACCATCGAGTGAAGAATCCTCCTCCACTCGATGCTTGTCTCTTATCCATTTTCTTCTTTTTCTCCTTCTCCTTTTTCAATTCCTTCTTGTGATCTTTGATCTTCTTGGCTTCCGATGCTGAGCTAACAGCGACTTTCGTCGACGTTAGGGTATCACTGAAAATGCCTAAAATTYTTGGAATTTCTTCAAAAATAACAACTCACGGTGGTGACGGTGATCCTGATCCTCTCAGCGGTCTGAAGCCAGGTTTGCGCGTTCCTCTTTCTCTACAACAACTTGGATTATTGCCTTCTTTGTCTATATAGTCAAGTTTCCGTTCTACAACGAGTGGCGGCGTGTGCAACGGTTCGACATCACTTTGTACATTCAACGAAGTCTCCCACATTGACATGCGTTTATAGTTGGCACTGGACGATACGAGTGACGGAACAGCGACATGTGGGACAGACGAGGATCGTGATTTTGAGAGTTTTTTATTGTAAACAGGTTTTGGAATATGTATAAGACCCGGCACCTCATAAGGTAAATCACGTCCATCGTCATCGGCTATTGTCGGTTCGCGGATCTGTTTTTTCTGTCCACGAACCGCCCGACCACCTGCTACACATTTACAAAGACAACAACGACAACACACACAAACCATCCAACTGATCTGGAACAAGATGGATTGAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>496 412 83 9</canonical_bands>
                <polymorphic_bands>496 421 83</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAGCTAACAGCGACTTTC</pcr_primer_p1>
		<pcr_primer_p2>TGTACAAAGTGATGTCGAACC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTGAGCTAACAGCGACTTTCGTCGACGTTAGGGTATCACTGAAAATGCCTAAAATTTTTGGAATTTCTTCAAAAATAACAACTCACGGTGGTGACGGTGATCCTGATCCTCTCAGCGGTCTGAAGCCAGGTTTGCGCGTTCCTCTTTCTCTACAACAACTTGGATTATTGCCTTCTTTGTCTATATAGTCAAGTTTCCGTTCTACAACGAGTGGCGGCGTGTGCAACGGTTCGACATCACTTTGTACA</canonical_amplicon>
		<polymorphic_amplicon>CTGAGCTAACAGCGACTTTCGTCGACGTTAGGGTATCACTGAAAATGCCTAAAATTYTTGGAATTTCTTCAAAAATAACAACTCACGGTGGTGACGGTGATCCTGATCCTCTCAGCGGTCTGAAGCCAGGTTTGCGCGTTCCTCTTTCTCTACAACAACTTGGATTATTGCCTTCTTTGTCTATATAGTCAAGTTTCCGTTCTACAACGAGTGGCGGCGTGTGCAACGGTTCGACATCACTTTGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23005</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>140640</contig_pos>
        <strand>+</strand>
        <context>CCTCATAAGG[C/T]AAATCACGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATTGTAAACAGGTTTTGGAATATGTATAAGACCCGGCACCTCATAAGG</left_flank>
        <right_flank>AAATCACGTCCATCGTCATCGGCTATTGTCGGTTCGCGGATCTGTTTTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTCGATGCTTGTCTCTTATCCATTTTCTTCTTTTTCTCCTTCTCCTTTTTCAATTCCTTCTTGTGATCTTTGATCTTCTTGGCTTCCGATGCTGAGCTAACAGCGACTTTCGTCGACGTTAGGGTATCACTGAAAATGCCTAAAATTTTTGGAATTTCTTCAAAAATAACAACTCACGGTGGTGACGGTGATCCTGATCCTCTCAGCGGTCTGAAGCCAGGTTTGCGCGTTCCTCTTTCTCTACAACAACTTGGATTATTGCCTTCTTTGTCTATATAGTCAAGTTTCCGTTCTACAACGAGTGGCGGCGTGTGCAACGGTTCGACATCACTTTGTACATTCAACGAAGTCTCCCACATTGACATGCGTTTATAGTTGGCACTGGACGATACGAGTGACGGAACAGCGACATGTGGGACAGACGAGGATCGTGATTTTGAGAGTTTTTTATTGTAAACAGGTTTTGGAATATGTATAAGACCCGGCACCTCATAAGGTAAATCACGTCCATCGTCATCGGCTATTGTCGGTTCGCGGATCTGTTTTTTCTGTCCACGAACCGCCCGACCACCTGCTACACATTTACAAAGACAACAACGACAACACACACAAACCATCCAACTGATCTGGAACAAGATGGATTGAATAGACAAGGACAAAGATTAATTGCTAGTTCATGATGATGATGGGTAGGATATTTTCAATCATCGTAAAACATGTAATACGAAGAAGAGCCTTCTAACTTTTAACTTTTAAGTTTGAGCCAATTTATCTCGGTACCTTTCAAAGATATCAAAGTTGTCAACTAATAAATTGTTTATCGAAATATCAAAAGCATTTCGTCAGTTCACACATTTTGATATCTTGCATAGGAATTGGGAAAATTTAGTTCAAACTTGACAGTGTGGGAGCCCTTAAATTGCAGGTTTTGCTAAGTATTGAATCGGGTGGCAACTAGTAGAAAATACAAAATAGTTTTTATATATTCATAGAGATTC</canonical>
            <polymorphic>CACTCGATGCTTGTCTCTTATCCATTTTCTTCTTTTTCTCCTTCTCCTTTTTCAATTCCTTCTTGTGATCTTTGATCTTCTTGGCTTCCGATGCTGAGCTAACAGCGACTTTCGTCGACGTTAGGGTATCACTGAAAATGCCTAAAATTTTTGGAATTTCTTCAAAAATAACAACTCACGGTGGTGACGGTGATCCTGATCCTCTCAGCGGTCTGAAGCCAGGTTTGCGCGTTCCTCTTTCTCTACAACAACTTGGATTATTGCCTTCTTTGTCTATATAGTCAAGTTTCCGTTCTACAACGAGTGGCGGCGTGTGCAACGGTTCGACATCACTTTGTACATTCAACGAAGTCTCCCACATTGACATGCGTTTATAGTTGGCACTGGACGATACGAGTGACGGAACAGCGACATGTGGGACAGACGAGGATCGTGATTTTGAGAGTTTTTTATTGTAAACAGGTTTTGGAATATGTATAAGACCCGGCACCTCATAAGGYAAATCACGTCCATCGTCATCGGCTATTGTCGGTTCGCGGATCTGTTTTTTCTGTCCACGAACCGCCCGACCACCTGCTACACATTTACAAAGACAACAACGACAACACACACAAACCATCCAACTGATCTGGAACAAGATGGATTGAATAGACAAGGACAAAGATTAATTGCTAGTTCATGATGATGATGGGTAGGATATTTTCAATCATCGTAAAACATGTAATACGAAGAAGAGCCTTCTAACTTTTAACTTTTAAGTTTGAGCCAATTTATCTCGGTACCTTTCAAAGATATCAAAGTTGTCAACTAATAAATTGTTTATCGAAATATCAAAAGCATTTCGTCAGTTCACACATTTTGATATCTTGCATAGGAATTGGGAAAATTTAGTTCAAACTTGACAGTGTGGGAGCCCTTAAATTGCAGGTTTTGCTAAGTATTGAATCGGGTGGCAACTAGTAGAAAATACAAAATAGTTTTTATATATTCATAGAGATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCGTGATTTTGAGAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAACTAGCAATTAATCTTTGTCCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCGTGATTTTGAGAGTTTTTTATTGTAAACAGGTTTTGGAATATGTATAAGACCCGGCACCTCATAAGGTAAATCACGTCCATCGTCATCGGCTATTGTCGGTTCGCGGATCTGTTTTTTCTGTCCACGAACCGCCCGACCACCTGCTACACATTTACAAAGACAACAACGACAACACACACAAACCATCCAACTGATCTGGAACAAGATGGATTGAATAGACAAGGACAAAGATTAATTGCTAGTTC</canonical_amplicon>
		<polymorphic_amplicon>GATCGTGATTTTGAGAGTTTTTTATTGTAAACAGGTTTTGGAATATGTATAAGACCCGGCACCTCATAAGGYAAATCACGTCCATCGTCATCGGCTATTGTCGGTTCGCGGATCTGTTTTTTCTGTCCACGAACCGCCCGACCACCTGCTACACATTTACAAAGACAACAACGACAACACACACAAACCATCCAACTGATCTGGAACAAGATGGATTGAATAGACAAGGACAAAGATTAATTGCTAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23006</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>142738</contig_pos>
        <strand></strand>
        <context>ATCTCAACAG[T/C]TGTTCTGGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCAGATCTATTGTTCGATGTTTTTTTTCTAACAAATCTAGATCTCAACAG</left_flank>
        <right_flank>TGTTCTGGTAGCAATAGACAATACCGTAAAACCTGTATTAGAAGGGTACC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATAAACTTTTTAATCGGGAAGAGTCTTCTGATTCAGATGTTACTTCATCTGAAGTTTCATCAATTAACTTTTCCAAACCAGAATAGTTAGATTGCTTCTGGTATGACGTTATTTGAGATCCGGGGAAGTCGCTAACTTTTTGGAATTCGTTCATTTCGGATTCGAATAAGACGAAGCAAGTGTACACGGGGTTGAGTGATTGAACTTTTTTCTTTTCGATTACAACTACCAGTACATTCGTTTTGCCACCATCTTTACAAAGGACTAATGAAAATAGTGTGTTGATTAGAGAGACGGAAGAGGAAATTGAGAGCAAATAATTAACGAGTGTTTGTGATTAGCGATCAACATAAGGACCGAAGCGTGGAGGGAGTACTAACCGACCACATAGGTAGGTCAAAACTGTTTCTTGTGATCTACGATAGTCAACTTCTACTAAGTTACTCATCAGATCTATTGTTCGATGTTTTTTTTCTAACAAATCTAGATCTCAACAGTTGTTCTGGTAGCAATAGACAATACCGTAAAACCTGTATTAGAAGGGTACCTCTAATAGAAGGGCCCTCCGGAGGTACCTTGGAACAATACAAGTGCCCGCCCATCTAATATAGGTTTTACGGTATTTAAAGTTTCATGTACTCGCTACTACCGTAGGAAAACCAGGAAATGTTTCTGAATCTTCTACTTATACTGGTTTTTATCTTCTAAAAGCTCTTCACCAGATATCTTTAACCTTTCATTCTCATGCTCTATGTTTTGCTCATTCATGTCACTTGCTCTTTTTTCTTCTTCCTGCTGATATGTTTGATCTAGTTTTCTCTGCCAGTTTTTCTTTACCCAACCAAGTGGCTTGTTATCCCGTTAGAACCAAAATGCTCTTTTCTCCACATCGTTTGCACCATCCGTTTATATTGTTGACCTCGGGAAAAATCTGTCGCAACGACTATCACTTTTTGTGGAACTTATGTCCTAGCGCCAAGCTTTCTATCTTTTTGCTG</canonical>
            <polymorphic>TGATAAACTTTTTAATCGGGAAGAGTCTTCTGATTCAGATGTTACTTCATCTGAAGTTTCATCAATTAACTTTTCCAAACCAGAATAGTTAGATTGCTTCTGGTATGACGTTATTTGAGATCCGGGGAAGTCGCTAACTTTTTGGAATTCGTTCATTTCGGATTCGAATAAGACGAAGCAAGTGTACACGGGGTTGAGTGATTGAACTTTTTTCTTTTCGATTACAACTACCAGTACATTCGTTTTGCCACCATCTTTACAAAGGACTAATGAAAATAGTGTGTTGATTAGAGAGACGGAAGAGGAAATTGAGAGCAAATAATTAACGAGTGTTTGTGATTAGCGATCAACATAAGGACCGAAGCGTGGAGGGAGTACTAACCGACCACATAGGTAGGTCAAAACTGTTTCTTGTGATCTACGATAGTCAACTTCTACTAAGTTACTCATCAGATCTATTGTTCGATGTTTTTTTTCTAACAAATCTAGATCTCAACAGYTGTTCTGGTAGCAATAGACAATACCGTAAAACCTGTATTAGAAGGGTACCTCTAATAGAAGGGCCCTCCGGAGGTACCTTGGAACAATACAAGTGCCCGCCCATCTAATATAGGTTTTACGGTATTTAAAGTTTCATGTACTCGCTACTACCGTAGGAAAACCAGGAAATGTTTCTGAATCTTCTACTTATACTGGTTTTTATCTTCTAAAAGCTCTTCACCAGATATCTTTAACCTTTCATTCTCATGCTCTATGTTTTGCTCATTCATGTCACTTGCTCTTTTTTCTTCTTCCTGCTGATATGTTTGATCTAGTTTTCTCTGCCAGTTTTTCTTTACCCAACCAAGTGGCTTGTTATCCCGTTAGAACCAAAATGCTCTTTTCTCCACATCGTTTGCACCATCCGTTTATATTGTTGACCTCGGGAAAAATCTGTCGCAACGACTATCACTTTTTGTGGAACTTATGTCCTAGCGCCAAGCTTTCTATCTTTTTGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>406 348 96 92 31 27</canonical_bands>
                <polymorphic_bands>406 348 119 96 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAGGTAGGTCAAAACTGTTTCTT</pcr_primer_p1>
		<pcr_primer_p2>GGTAGTAGCGAGTACATGAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>ATAGGTAGGTCAAAACTGTTTCTTGTGATCTACGATAGTCAACTTCTACTAAGTTACTCATCAGATCTATTGTTCGATGTTTTTTTTCTAACAAATCTAGATCTCAACAGTTGTTCTGGTAGCAATAGACAATACCGTAAAACCTGTATTAGAAGGGTACCTCTAATAGAAGGGCCCTCCGGAGGTACCTTGGAACAATACAAGTGCCCGCCCATCTAATATAGGTTTTACGGTATTTAAAGTTTCATGTACTCGCTACTACC</canonical_amplicon>
		<polymorphic_amplicon>ATAGGTAGGTCAAAACTGTTTCTTGTGATCTACGATAGTCAACTTCTACTAAGTTACTCATCAGATCTATTGTTCGATGTTTTTTTTCTAACAAATCTAGATCTCAACAGYTGTTCTGGTAGCAATAGACAATACCGTAAAACCTGTATTAGAAGGGTACCTCTAATAGAAGGGCCCTCCGGAGGTACCTTGGAACAATACAAGTGCCCGCCCATCTAATATAGGTTTTACGGTATTTAAAGTTTCATGTACTCGCTACTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23007</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>142652</contig_pos>
        <strand>+</strand>
        <context>ACTGTTTCTT[G/T]TGATCTACGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCGTGGAGGGAGTACTAACCGACCACATAGGTAGGTCAAAACTGTTTCTT</left_flank>
        <right_flank>TGATCTACGATAGTCAACTTCTACTAAGTTACTCATCAGATCTATTGTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTGCGGCAAACGAATAATCGGAGAGGAAAGTAAATCTTTTGCCACAAAACCGCCACCACTCAAGTGGTTTTCTGTTTCTGAGTGTGATAAACTTTTTAATCGGGAAGAGTCTTCTGATTCAGATGTTACTTCATCTGAAGTTTCATCAATTAACTTTTCCAAACCAGAATAGTTAGATTGCTTCTGGTATGACGTTATTTGAGATCCGGGGAAGTCGCTAACTTTTTGGAATTCGTTCATTTCGGATTCGAATAAGACGAAGCAAGTGTACACGGGGTTGAGTGATTGAACTTTTTTCTTTTCGATTACAACTACCAGTACATTCGTTTTGCCACCATCTTTACAAAGGACTAATGAAAATAGTGTGTTGATTAGAGAGACGGAAGAGGAAATTGAGAGCAAATAATTAACGAGTGTTTGTGATTAGCGATCAACATAAGGACCGAAGCGTGGAGGGAGTACTAACCGACCACATAGGTAGGTCAAAACTGTTTCTTGTGATCTACGATAGTCAACTTCTACTAAGTTACTCATCAGATCTATTGTTCGATGTTTTTTTTCTAACAAATCTAGATCTCAACAGTTGTTCTGGTAGCAATAGACAATACCGTAAAACCTGTATTAGAAGGGTACCTCTAATAGAAGGGCCCTCCGGAGGTACCTTGGAACAATACAAGTGCCCGCCCATCTAATATAGGTTTTACGGTATTTAAAGTTTCATGTACTCGCTACTACCGTAGGAAAACCAGGAAATGTTTCTGAATCTTCTACTTATACTGGTTTTTATCTTCTAAAAGCTCTTCACCAGATATCTTTAACCTTTCATTCTCATGCTCTATGTTTTGCTCATTCATGTCACTTGCTCTTTTTTCTTCTTCCTGCTGATATGTTTGATCTAGTTTTCTCTGCCAGTTTTTCTTTACCCAACCAAGTGGCTTGTTATCCCGTTAGAACCAAAATGCTCTTTTCTCCACATCGTTTGCACCATCCGTTTATAT</canonical>
            <polymorphic>GTTTGCGGCAAACGAATAATCGGAGAGGAAAGTAAATCTTTTGCCACAAAACCGCCACCACTCAAGTGGTTTTCTGTTTCTGAGTGTGATAAACTTTTTAATCGGGAAGAGTCTTCTGATTCAGATGTTACTTCATCTGAAGTTTCATCAATTAACTTTTCCAAACCAGAATAGTTAGATTGCTTCTGGTATGACGTTATTTGAGATCCGGGGAAGTCGCTAACTTTTTGGAATTCGTTCATTTCGGATTCGAATAAGACGAAGCAAGTGTACACGGGGTTGAGTGATTGAACTTTTTTCTTTTCGATTACAACTACCAGTACATTCGTTTTGCCACCATCTTTACAAAGGACTAATGAAAATAGTGTGTTGATTAGAGAGACGGAAGAGGAAATTGAGAGCAAATAATTAACGAGTGTTTGTGATTAGCGATCAACATAAGGACCGAAGCGTGGAGGGAGTACTAACCGACCACATAGGTAGGTCAAAACTGTTTCTTKTGATCTACGATAGTCAACTTCTACTAAGTTACTCATCAGATCTATTGTTCGATGTTTTTTTTCTAACAAATCTAGATCTCAACAGTTGTTCTGGTAGCAATAGACAATACCGTAAAACCTGTATTAGAAGGGTACCTCTAATAGAAGGGCCCTCCGGAGGTACCTTGGAACAATACAAGTGCCCGCCCATCTAATATAGGTTTTACGGTATTTAAAGTTTCATGTACTCGCTACTACCGTAGGAAAACCAGGAAATGTTTCTGAATCTTCTACTTATACTGGTTTTTATCTTCTAAAAGCTCTTCACCAGATATCTTTAACCTTTCATTCTCATGCTCTATGTTTTGCTCATTCATGTCACTTGCTCTTTTTTCTTCTTCCTGCTGATATGTTTGATCTAGTTTTCTCTGCCAGTTTTTCTTTACCCAACCAAGTGGCTTGTTATCCCGTTAGAACCAAAATGCTCTTTTCTCCACATCGTTTGCACCATCCGTTTATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>182 179 125 76 54 50 49 46 39 31 30 28 20 18 14 12 11 11 8 6 4 3 2 2</canonical_bands>
                <polymorphic_bands>207 182 125 76 54 50 49 46 39 31 30 20 18 14 12 11 11 8 6 4 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGATTAGAGAGACGGAAGAG</pcr_primer_p1>
		<pcr_primer_p2>TTACGGTATTGTCTATTGCTACC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTTGATTAGAGAGACGGAAGAGGAAATTGAGAGCAAATAATTAACGAGTGTTTGTGATTAGCGATCAACATAAGGACCGAAGCGTGGAGGGAGTACTAACCGACCACATAGGTAGGTCAAAACTGTTTCTTGTGATCTACGATAGTCAACTTCTACTAAGTTACTCATCAGATCTATTGTTCGATGTTTTTTTTCTAACAAATCTAGATCTCAACAGTTGTTCTGGTAGCAATAGACAATACCGTAA</canonical_amplicon>
		<polymorphic_amplicon>GTTGATTAGAGAGACGGAAGAGGAAATTGAGAGCAAATAATTAACGAGTGTTTGTGATTAGCGATCAACATAAGGACCGAAGCGTGGAGGGAGTACTAACCGACCACATAGGTAGGTCAAAACTGTTTCTTKTGATCTACGATAGTCAACTTCTACTAAGTTACTCATCAGATCTATTGTTCGATGTTTTTTTTCTAACAAATCTAGATCTCAACAGTTGTTCTGGTAGCAATAGACAATACCGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23008</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>152400</contig_pos>
        <strand>+</strand>
        <context>CATCTAAGTC[A/T]CMTCATCATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGTTCACTCAAAGGTTCGTTTTGAAGACCACTTGACTAGACATCTAAGTC</left_flank>
        <right_flank>CATCATCATCAGTTTCTTGAGCCATCCAATTTATATGTCTGGTATTTCCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTCCCGATGTCCCTTCCTTTGGTTTGGGAGCCGTAATCTGCTACTCTTCTTTTTTTTATTCTCCTGTTGTATGTACGTATCTGATCCCTAATCCACAATGTTTTATTGGTTTTTATTAGTATTTGCTGTCTAATGCTCACTCTAGCTTTCTGGATTACATATACGAACGTCTTATTAGAATTCTAAAAAATGCACTCGGCCTATCTTGACTTCTCAAACCTCTCCTTGATCTCAAAATGTCGCTTCCCACGAAGATTTCCTGCCTACTTTCCCTTGAGTTGATAATTGCTCTTTTCGAGTTTTCCCTTTGCTCATTTCACTTGTATTTTTCTTTTTTTTTACATTTCATCCAATTCCAGATAATGACCAACAGTGCCATCGGCTTGCCTCCCACTCGGATAAATCGTCGTCGATCGACCAAGGCTCTCCATGATTTCTTCAGCCGCCCGTTCACTCAAAGGTTCGTTTTGAAGACCACTTGACTAGACATCTAAGTCACATCATCATCAGTTTCTTGAGCCATCCAATTTATATGTCTGGTATTTCCATTTTATATGGGTCCCCTTTCTAGACGTCTCTTTGATGTGAAAACGTCCGAGATTTATGAAATGGAAATGAGTCTTGTGACAGACAGTGTATACGAATCTAGAGATCCGAACGTCTGATTCTCTGATGTGACGTCTAGATTTCGTGAGCCAAAGAAAATAGGTCACAAGGGTACTTGTGACGTGGCACAGATCGCGTGACTCTGATTCTTTCAGAAGCGAAGATCGTGTCTAACGAAGAGGTTTGAAGGGCATTGTGAAGTGATACATCCCTTACGAAAGGGAAAAAAACTTGTGGAATTAGTAATTTGGGAGAGAAGTAACGTAGTAGAAGTGAAAAATGACGTAGCCGTCGGCTGTATGCGTCTGAAATAGGACAGTGGCAGCTGAAATTCTGCAAGTGTGCCATTGTTGTAAACTTTTGTAATTGTGAAAATTTTATTGATTATATGG</canonical>
            <polymorphic>CTTTCCCGATGTCCCTTCCTTTGGTTTGGGAGCCGTAATCTGCTACTCTTCTTTTTTTTATTCTCCTGTTGTATGTACGTATCTGATCCCTAATCCACAATGTTTTATTGGTTTTTATTAGTATTTGCTGTCTAATGCTCACTCTAGCTTTCTGGATTACATATACGAACGTCTTATTAGAATTCTAAAAAATGCACTCGGCCTATCTTGACTTCTCAAACCTCTCCTTGATCTCAAAATGTCGCTTCCCACGAAGATTTCCTGCCTACTTTCCCTTGAGTTGATAATTGCTCTTTTCGAGTTTTCCCTTTGCTCATTTCACTTGTATTTTTCTTTTTTTTTACATTTCATCCAATTCCAGATAATGACCAACAGTGCCATCGGCTTGCCTCCCACTCGGATAAATCGTCGTCGATCGACCAAGGCTCTCCATGATTTCTTCAGCCGCCCGTTCACTCAAAGGTTCGTTTTGAAGACCACTTGACTAGACATCTAAGTCWCATCATCATCAGTTTCTTGAGCCATCCAATTTATATGTCTGGTATTTCCATTTTATATGGGTCCCCTTTCTAGACGTCTCTTTGATGTGAAAACGTCCGAGATTTATGAAATGGAAATGAGTCTTGTGACAGACAGTGTATACGAATCTAGAGATCCGAACGTCTGATTCTCTGATGTGACGTCTAGATTTCGTGAGCCAAAGAAAATAGGTCACAAGGGTACTTGTGACGTGGCACAGATCGCGTGACTCTGATTCTTTCAGAAGCGAAGATCGTGTCTAACGAAGAGGTTTGAAGGGCATTGTGAAGTGATACATCCCTTACGAAAGGGAAAAAAACTTGTGGAATTAGTAATTTGGGAGAGAAGTAACGTAGTAGAAGTGAAAAATGACGTAGCCGTCGGCTGTATGCGTCTGAAATAGGACAGTGGCAGCTGAAATTCTGCAAGTGTGCCATTGTTGTAAACTTTTGTAATTGTGAAAATTTTATTGATTATATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>97 89 70 60 56 55 55 46 44 41 39 39 33 30 29 27 24 21 21 21 19 18 16 14 11 10 5 5 3 2</canonical_bands>
                <polymorphic_bands>110 97 70 60 56 55 55 46 44 41 39 39 33 30 29 27 24 21 21 19 18 16 14 11 10 5 5 3 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>496 134 129 122 51 34 19 15</canonical_bands>
                <polymorphic_bands>625 134 122 51 34 19 15</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>496 256 129 51 34 19 15</canonical_bands>
                <polymorphic_bands>625 256 51 34 19 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACATTTCATCCAATTCCAGATA</pcr_primer_p1>
		<pcr_primer_p2>ACATCAAAGAGACGTCTAGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TACATTTCATCCAATTCCAGATAATGACCAACAGTGCCATCGGCTTGCCTCCCACTCGGATAAATCGTCGTCGATCGACCAAGGCTCTCCATGATTTCTTCAGCCGCCCGTTCACTCAAAGGTTCGTTTTGAAGACCACTTGACTAGACATCTAAGTCACATCATCATCAGTTTCTTGAGCCATCCAATTTATATGTCTGGTATTTCCATTTTATATGGGTCCCCTTTCTAGACGTCTCTTTGATGT</canonical_amplicon>
		<polymorphic_amplicon>TACATTTCATCCAATTCCAGATAATGACCAACAGTGCCATCGGCTTGCCTCCCACTCGGATAAATCGTCGTCGATCGACCAAGGCTCTCCATGATTTCTTCAGCCGCCCGTTCACTCAAAGGTTCGTTTTGAAGACCACTTGACTAGACATCTAAGTCWCATCATCATCAGTTTCTTGAGCCATCCAATTTATATGTCTGGTATTTCCATTTTATATGGGTCCCCTTTCTAGACGTCTCTTTGATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23009</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>152402</contig_pos>
        <strand>+</strand>
        <context>TCTAAGTCWC[A/C]TCATCATCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCACTCAAAGGTTCGTTTTGAAGACCACTTGACTAGACATCTAAGTCAC</left_flank>
        <right_flank>TCATCATCAGTTTCTTGAGCCATCCAATTTATATGTCTGGTATTTCCATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCCGATGTCCCTTCCTTTGGTTTGGGAGCCGTAATCTGCTACTCTTCTTTTTTTTATTCTCCTGTTGTATGTACGTATCTGATCCCTAATCCACAATGTTTTATTGGTTTTTATTAGTATTTGCTGTCTAATGCTCACTCTAGCTTTCTGGATTACATATACGAACGTCTTATTAGAATTCTAAAAAATGCACTCGGCCTATCTTGACTTCTCAAACCTCTCCTTGATCTCAAAATGTCGCTTCCCACGAAGATTTCCTGCCTACTTTCCCTTGAGTTGATAATTGCTCTTTTCGAGTTTTCCCTTTGCTCATTTCACTTGTATTTTTCTTTTTTTTTACATTTCATCCAATTCCAGATAATGACCAACAGTGCCATCGGCTTGCCTCCCACTCGGATAAATCGTCGTCGATCGACCAAGGCTCTCCATGATTTCTTCAGCCGCCCGTTCACTCAAAGGTTCGTTTTGAAGACCACTTGACTAGACATCTAAGTCACATCATCATCAGTTTCTTGAGCCATCCAATTTATATGTCTGGTATTTCCATTTTATATGGGTCCCCTTTCTAGACGTCTCTTTGATGTGAAAACGTCCGAGATTTATGAAATGGAAATGAGTCTTGTGACAGACAGTGTATACGAATCTAGAGATCCGAACGTCTGATTCTCTGATGTGACGTCTAGATTTCGTGAGCCAAAGAAAATAGGTCACAAGGGTACTTGTGACGTGGCACAGATCGCGTGACTCTGATTCTTTCAGAAGCGAAGATCGTGTCTAACGAAGAGGTTTGAAGGGCATTGTGAAGTGATACATCCCTTACGAAAGGGAAAAAAACTTGTGGAATTAGTAATTTGGGAGAGAAGTAACGTAGTAGAAGTGAAAAATGACGTAGCCGTCGGCTGTATGCGTCTGAAATAGGACAGTGGCAGCTGAAATTCTGCAAGTGTGCCATTGTTGTAAACTTTTGTAATTGTGAAAATTTTATTGATTATATGGGC</canonical>
            <polymorphic>TTCCCGATGTCCCTTCCTTTGGTTTGGGAGCCGTAATCTGCTACTCTTCTTTTTTTTATTCTCCTGTTGTATGTACGTATCTGATCCCTAATCCACAATGTTTTATTGGTTTTTATTAGTATTTGCTGTCTAATGCTCACTCTAGCTTTCTGGATTACATATACGAACGTCTTATTAGAATTCTAAAAAATGCACTCGGCCTATCTTGACTTCTCAAACCTCTCCTTGATCTCAAAATGTCGCTTCCCACGAAGATTTCCTGCCTACTTTCCCTTGAGTTGATAATTGCTCTTTTCGAGTTTTCCCTTTGCTCATTTCACTTGTATTTTTCTTTTTTTTTACATTTCATCCAATTCCAGATAATGACCAACAGTGCCATCGGCTTGCCTCCCACTCGGATAAATCGTCGTCGATCGACCAAGGCTCTCCATGATTTCTTCAGCCGCCCGTTCACTCAAAGGTTCGTTTTGAAGACCACTTGACTAGACATCTAAGTCACMTCATCATCAGTTTCTTGAGCCATCCAATTTATATGTCTGGTATTTCCATTTTATATGGGTCCCCTTTCTAGACGTCTCTTTGATGTGAAAACGTCCGAGATTTATGAAATGGAAATGAGTCTTGTGACAGACAGTGTATACGAATCTAGAGATCCGAACGTCTGATTCTCTGATGTGACGTCTAGATTTCGTGAGCCAAAGAAAATAGGTCACAAGGGTACTTGTGACGTGGCACAGATCGCGTGACTCTGATTCTTTCAGAAGCGAAGATCGTGTCTAACGAAGAGGTTTGAAGGGCATTGTGAAGTGATACATCCCTTACGAAAGGGAAAAAAACTTGTGGAATTAGTAATTTGGGAGAGAAGTAACGTAGTAGAAGTGAAAAATGACGTAGCCGTCGGCTGTATGCGTCTGAAATAGGACAGTGGCAGCTGAAATTCTGCAAGTGTGCCATTGTTGTAAACTTTTGTAATTGTGAAAATTTTATTGATTATATGGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACATTTCATCCAATTCCAGATA</pcr_primer_p1>
		<pcr_primer_p2>ACATCAAAGAGACGTCTAGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TACATTTCATCCAATTCCAGATAATGACCAACAGTGCCATCGGCTTGCCTCCCACTCGGATAAATCGTCGTCGATCGACCAAGGCTCTCCATGATTTCTTCAGCCGCCCGTTCACTCAAAGGTTCGTTTTGAAGACCACTTGACTAGACATCTAAGTCACATCATCATCAGTTTCTTGAGCCATCCAATTTATATGTCTGGTATTTCCATTTTATATGGGTCCCCTTTCTAGACGTCTCTTTGATGT</canonical_amplicon>
		<polymorphic_amplicon>TACATTTCATCCAATTCCAGATAATGACCAACAGTGCCATCGGCTTGCCTCCCACTCGGATAAATCGTCGTCGATCGACCAAGGCTCTCCATGATTTCTTCAGCCGCCCGTTCACTCAAAGGTTCGTTTTGAAGACCACTTGACTAGACATCTAAGTCACMTCATCATCAGTTTCTTGAGCCATCCAATTTATATGTCTGGTATTTCCATTTTATATGGGTCCCCTTTCTAGACGTCTCTTTGATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23010</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>152464</contig_pos>
        <strand>+</strand>
        <context>TATATGGGTC[C/T]CCTTTCTAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTTGAGCCATCCAATTTATATGTCTGGTATTTCCATTTTATATGGGTC</left_flank>
        <right_flank>CCTTTCTAGACGTCTCTTTGATGTGAAAACGTCCGAGATTTATGAAATGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTGTTGTATGTACGTATCTGATCCCTAATCCACAATGTTTTATTGGTTTTTATTAGTATTTGCTGTCTAATGCTCACTCTAGCTTTCTGGATTACATATACGAACGTCTTATTAGAATTCTAAAAAATGCACTCGGCCTATCTTGACTTCTCAAACCTCTCCTTGATCTCAAAATGTCGCTTCCCACGAAGATTTCCTGCCTACTTTCCCTTGAGTTGATAATTGCTCTTTTCGAGTTTTCCCTTTGCTCATTTCACTTGTATTTTTCTTTTTTTTTACATTTCATCCAATTCCAGATAATGACCAACAGTGCCATCGGCTTGCCTCCCACTCGGATAAATCGTCGTCGATCGACCAAGGCTCTCCATGATTTCTTCAGCCGCCCGTTCACTCAAAGGTTCGTTTTGAAGACCACTTGACTAGACATCTAAGTCACATCATCATCAGTTTCTTGAGCCATCCAATTTATATGTCTGGTATTTCCATTTTATATGGGTCCCCTTTCTAGACGTCTCTTTGATGTGAAAACGTCCGAGATTTATGAAATGGAAATGAGTCTTGTGACAGACAGTGTATACGAATCTAGAGATCCGAACGTCTGATTCTCTGATGTGACGTCTAGATTTCGTGAGCCAAAGAAAATAGGTCACAAGGGTACTTGTGACGTGGCACAGATCGCGTGACTCTGATTCTTTCAGAAGCGAAGATCGTGTCTAACGAAGAGGTTTGAAGGGCATTGTGAAGTGATACATCCCTTACGAAAGGGAAAAAAACTTGTGGAATTAGTAATTTGGGAGAGAAGTAACGTAGTAGAAGTGAAAAATGACGTAGCCGTCGGCTGTATGCGTCTGAAATAGGACAGTGGCAGCTGAAATTCTGCAAGTGTGCCATTGTTGTAAACTTTTGTAATTGTGAAAATTTTATTGATTATATGGGCATATGTACCTTGTTTTTTAAAAAGGCTTTATATTGAACAAAATTTTTTAACGAATAAAAAAT</canonical>
            <polymorphic>CCTGTTGTATGTACGTATCTGATCCCTAATCCACAATGTTTTATTGGTTTTTATTAGTATTTGCTGTCTAATGCTCACTCTAGCTTTCTGGATTACATATACGAACGTCTTATTAGAATTCTAAAAAATGCACTCGGCCTATCTTGACTTCTCAAACCTCTCCTTGATCTCAAAATGTCGCTTCCCACGAAGATTTCCTGCCTACTTTCCCTTGAGTTGATAATTGCTCTTTTCGAGTTTTCCCTTTGCTCATTTCACTTGTATTTTTCTTTTTTTTTACATTTCATCCAATTCCAGATAATGACCAACAGTGCCATCGGCTTGCCTCCCACTCGGATAAATCGTCGTCGATCGACCAAGGCTCTCCATGATTTCTTCAGCCGCCCGTTCACTCAAAGGTTCGTTTTGAAGACCACTTGACTAGACATCTAAGTCACATCATCATCAGTTTCTTGAGCCATCCAATTTATATGTCTGGTATTTCCATTTTATATGGGTCYCCTTTCTAGACGTCTCTTTGATGTGAAAACGTCCGAGATTTATGAAATGGAAATGAGTCTTGTGACAGACAGTGTATACGAATCTAGAGATCCGAACGTCTGATTCTCTGATGTGACGTCTAGATTTCGTGAGCCAAAGAAAATAGGTCACAAGGGTACTTGTGACGTGGCACAGATCGCGTGACTCTGATTCTTTCAGAAGCGAAGATCGTGTCTAACGAAGAGGTTTGAAGGGCATTGTGAAGTGATACATCCCTTACGAAAGGGAAAAAAACTTGTGGAATTAGTAATTTGGGAGAGAAGTAACGTAGTAGAAGTGAAAAATGACGTAGCCGTCGGCTGTATGCGTCTGAAATAGGACAGTGGCAGCTGAAATTCTGCAAGTGTGCCATTGTTGTAAACTTTTGTAATTGTGAAAATTTTATTGATTATATGGGCATATGTACCTTGTTTTTTAAAAAGGCTTTATATTGAACAAAATTTTTTAACGAATAAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGGWCCC</site>
                <isoschizomers>
                    <enzyme>SanDI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAGACCACTTGACTAGACATC</pcr_primer_p1>
		<pcr_primer_p2>GTACCCTTGTGACCTATTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TGAAGACCACTTGACTAGACATCTAAGTCACATCATCATCAGTTTCTTGAGCCATCCAATTTATATGTCTGGTATTTCCATTTTATATGGGTCCCCTTTCTAGACGTCTCTTTGATGTGAAAACGTCCGAGATTTATGAAATGGAAATGAGTCTTGTGACAGACAGTGTATACGAATCTAGAGATCCGAACGTCTGATTCTCTGATGTGACGTCTAGATTTCGTGAGCCAAAGAAAATAGGTCACAAGGGTAC</canonical_amplicon>
		<polymorphic_amplicon>TGAAGACCACTTGACTAGACATCTAAGTCACATCATCATCAGTTTCTTGAGCCATCCAATTTATATGTCTGGTATTTCCATTTTATATGGGTCYCCTTTCTAGACGTCTCTTTGATGTGAAAACGTCCGAGATTTATGAAATGGAAATGAGTCTTGTGACAGACAGTGTATACGAATCTAGAGATCCGAACGTCTGATTCTCTGATGTGACGTCTAGATTTCGTGAGCCAAAGAAAATAGGTCACAAGGGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23011</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>156014</contig_pos>
        <strand>+</strand>
        <context>GGATAATGTG[A/T]ACTTTTCTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCTATCTAGGCTATACTTTTTACCACTAGCTTCAAATAAGGATAATGTG</left_flank>
        <right_flank>ACTTTTCTGTGACTTGATAAAATCTGAGCCAAGTTTTCTATTGTGATATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTCATCACCAGAAAGAGCATATCTTCTTCGATCTTTGAATCTAAATTTTATGATGAGAGGTTAACTCGGCGTGAGAGGGGTACTCATCTAAATTATATCTCCTATTCTGCGTGCATCAGAATAGGAAGAAGAATAGAATAGTTGAGAGAAGAAGAAGAAGAACTAGTAGTCGTAGAAGGACTGAAGGACATAAGAATAGAAGCGCAGAGGCAAAAGGACCCTCTCGTGTCGCTTCTTCTTTTTGTTGCCATTTCAATTACATTTTCACGCACGTGTAAGGAGAAACATTTCTGAACTGCTCACACATAAAAAAGAGGATAACTGAAAGCCGTTTTTGCTTTCTTTGAGTTCATCTGAGGTTCAAAGGATTAAAATTCGTTCTCAGTAGTCAGTATTGTCTTTTTTTGCTGAAAATGCCCCGGAGATTAATGTGGAATTGAAGCGTTGAATCTATCTAGGCTATACTTTTTACCACTAGCTTCAAATAAGGATAATGTGAACTTTTCTGTGACTTGATAAAATCTGAGCCAAGTTTTCTATTGTGATATTTTACCGTAAAACCTGTAATAAAAGAGCCCATAACCGTTTTTGCTGTCACTTGAACCATTTAAGCCATTTTTGACACCTTTTGGCCATTCGAGACTATTTTCAAAGCCGTTTTCGGACTATTTAGGGTCATTTTCTGCAAGTTATAAATTGAGCCGATTTTTCTCGGTTCTTGTCGAAAATTTAAAAATGTTGTCAACTTATAAAATTTTTATTAGAATTTCAATAATATTTTGTCAGTTGACCACTTTTTGATATCTTCCATAGGAAATTTAATAAATTAGCTCAAACTTGACTGGGTGGGCGCCCTTGTAATACAGGTTTCAAGATAATTCTATCGAGATCAGTTCATTTTCCGGTTACCTCATTGATGCTCTTATGAGCTTTCTATAATGCTACGTGCCAGTTGTTCACTTTTTATTGTGAAAACGGACACCTTTCGGACATTTATCC</canonical>
            <polymorphic>CGTCATCACCAGAAAGAGCATATCTTCTTCGATCTTTGAATCTAAATTTTATGATGAGAGGTTAACTCGGCGTGAGAGGGGTACTCATCTAAATTATATCTCCTATTCTGCGTGCATCAGAATAGGAAGAAGAATAGAATAGTTGAGAGAAGAAGAAGAAGAACTAGTAGTCGTAGAAGGACTGAAGGACATAAGAATAGAAGCGCAGAGGCAAAAGGACCCTCTCGTGTCGCTTCTTCTTTTTGTTGCCATTTCAATTACATTTTCACGCACGTGTAAGGAGAAACATTTCTGAACTGCTCACACATAAAAAAGAGGATAACTGAAAGCCGTTTTTGCTTTCTTTGAGTTCATCTGAGGTTCAAAGGATTAAAATTCGTTCTCAGTAGTCAGTATTGTCTTTTTTTGCTGAAAATGCCCCGGAGATTAATGTGGAATTGAAGCGTTGAATCTATCTAGGCTATACTTTTTACCACTAGCTTCAAATAAGGATAATGTGWACTTTTCTGTGACTTGATAAAATCTGAGCCAAGTTTTCTATTGTGATATTTTACCGTAAAACCTGTAATAAAAGAGCCCATAACCGTTTTTGCTGTCACTTGAACCATTTAAGCCATTTTTGACACCTTTTGGCCATTCGAGACTATTTTCAAAGCCGTTTTCGGACTATTTAGGGTCATTTTCTGCAAGTTATAAATTGAGCCGATTTTTCTCGGTTCTTGTCGAAAATTTAAAAATGTTGTCAACTTATAAAATTTTTATTAGAATTTCAATAATATTTTGTCAGTTGACCACTTTTTGATATCTTCCATAGGAAATTTAATAAATTAGCTCAAACTTGACTGGGTGGGCGCCCTTGTAATACAGGTTTCAAGATAATTCTATCGAGATCAGTTCATTTTCCGGTTACCTCATTGATGCTCTTATGAGCTTTCTATAATGCTACGTGCCAGTTGTTCACTTTTTATTGTGAAAACGGACACCTTTCGGACATTTATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGATTAAAATTCGTTCTCAGT</pcr_primer_p1>
		<pcr_primer_p2>GCTTAAATGGTTCAAGTGACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGGATTAAAATTCGTTCTCAGTAGTCAGTATTGTCTTTTTTTGCTGAAAATGCCCCGGAGATTAATGTGGAATTGAAGCGTTGAATCTATCTAGGCTATACTTTTTACCACTAGCTTCAAATAAGGATAATGTGAACTTTTCTGTGACTTGATAAAATCTGAGCCAAGTTTTCTATTGTGATATTTTACCGTAAAACCTGTAATAAAAGAGCCCATAACCGTTTTTGCTGTCACTTGAACCATTTAAGC</canonical_amplicon>
		<polymorphic_amplicon>AAGGATTAAAATTCGTTCTCAGTAGTCAGTATTGTCTTTTTTTGCTGAAAATGCCCCGGAGATTAATGTGGAATTGAAGCGTTGAATCTATCTAGGCTATACTTTTTACCACTAGCTTCAAATAAGGATAATGTGWACTTTTCTGTGACTTGATAAAATCTGAGCCAAGTTTTCTATTGTGATATTTTACCGTAAAACCTGTAATAAAAGAGCCCATAACCGTTTTTGCTGTCACTTGAACCATTTAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23012</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>155946</contig_pos>
        <strand>+</strand>
        <context>GGAGATTAAT[A/G]TGGAATTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCAGTAGTCAGTATTGTCTTTTTTTGCTGAAAATGCCCCGGAGATTAAT</left_flank>
        <right_flank>TGGAATTGAAGCGTTGAATCTATCTAGGCTATACTTTTTACCACTAGCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTCTTGCATCCCTTCTGTGAAACGTCTTTCGCTTTTTGTCAGACTTCTGAATCTGTTCTTGTTATCGTCATCACCAGAAAGAGCATATCTTCTTCGATCTTTGAATCTAAATTTTATGATGAGAGGTTAACTCGGCGTGAGAGGGGTACTCATCTAAATTATATCTCCTATTCTGCGTGCATCAGAATAGGAAGAAGAATAGAATAGTTGAGAGAAGAAGAAGAAGAACTAGTAGTCGTAGAAGGACTGAAGGACATAAGAATAGAAGCGCAGAGGCAAAAGGACCCTCTCGTGTCGCTTCTTCTTTTTGTTGCCATTTCAATTACATTTTCACGCACGTGTAAGGAGAAACATTTCTGAACTGCTCACACATAAAAAAGAGGATAACTGAAAGCCGTTTTTGCTTTCTTTGAGTTCATCTGAGGTTCAAAGGATTAAAATTCGTTCTCAGTAGTCAGTATTGTCTTTTTTTGCTGAAAATGCCCCGGAGATTAATGTGGAATTGAAGCGTTGAATCTATCTAGGCTATACTTTTTACCACTAGCTTCAAATAAGGATAATGTGAACTTTTCTGTGACTTGATAAAATCTGAGCCAAGTTTTCTATTGTGATATTTTACCGTAAAACCTGTAATAAAAGAGCCCATAACCGTTTTTGCTGTCACTTGAACCATTTAAGCCATTTTTGACACCTTTTGGCCATTCGAGACTATTTTCAAAGCCGTTTTCGGACTATTTAGGGTCATTTTCTGCAAGTTATAAATTGAGCCGATTTTTCTCGGTTCTTGTCGAAAATTTAAAAATGTTGTCAACTTATAAAATTTTTATTAGAATTTCAATAATATTTTGTCAGTTGACCACTTTTTGATATCTTCCATAGGAAATTTAATAAATTAGCTCAAACTTGACTGGGTGGGCGCCCTTGTAATACAGGTTTCAAGATAATTCTATCGAGATCAGTTCATTTTCCGGTTACCTCATTGATGCTCTTATGAGCT</canonical>
            <polymorphic>AATTTCTTGCATCCCTTCTGTGAAACGTCTTTCGCTTTTTGTCAGACTTCTGAATCTGTTCTTGTTATCGTCATCACCAGAAAGAGCATATCTTCTTCGATCTTTGAATCTAAATTTTATGATGAGAGGTTAACTCGGCGTGAGAGGGGTACTCATCTAAATTATATCTCCTATTCTGCGTGCATCAGAATAGGAAGAAGAATAGAATAGTTGAGAGAAGAAGAAGAAGAACTAGTAGTCGTAGAAGGACTGAAGGACATAAGAATAGAAGCGCAGAGGCAAAAGGACCCTCTCGTGTCGCTTCTTCTTTTTGTTGCCATTTCAATTACATTTTCACGCACGTGTAAGGAGAAACATTTCTGAACTGCTCACACATAAAAAAGAGGATAACTGAAAGCCGTTTTTGCTTTCTTTGAGTTCATCTGAGGTTCAAAGGATTAAAATTCGTTCTCAGTAGTCAGTATTGTCTTTTTTTGCTGAAAATGCCCCGGAGATTAATRTGGAATTGAAGCGTTGAATCTATCTAGGCTATACTTTTTACCACTAGCTTCAAATAAGGATAATGTGAACTTTTCTGTGACTTGATAAAATCTGAGCCAAGTTTTCTATTGTGATATTTTACCGTAAAACCTGTAATAAAAGAGCCCATAACCGTTTTTGCTGTCACTTGAACCATTTAAGCCATTTTTGACACCTTTTGGCCATTCGAGACTATTTTCAAAGCCGTTTTCGGACTATTTAGGGTCATTTTCTGCAAGTTATAAATTGAGCCGATTTTTCTCGGTTCTTGTCGAAAATTTAAAAATGTTGTCAACTTATAAAATTTTTATTAGAATTTCAATAATATTTTGTCAGTTGACCACTTTTTGATATCTTCCATAGGAAATTTAATAAATTAGCTCAAACTTGACTGGGTGGGCGCCCTTGTAATACAGGTTTCAAGATAATTCTATCGAGATCAGTTCATTTTCCGGTTACCTCATTGATGCTCTTATGAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>169 129 115 83 66 55 54 53 41 40 39 34 27 27 24 22 12 4 4 2</canonical_bands>
                <polymorphic_bands>170 169 115 83 66 55 54 53 40 39 34 27 27 24 22 12 4 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGCCATTTCAATTACATTTT</pcr_primer_p1>
		<pcr_primer_p2>TCCTTATTTGAAGCTAGTGGTAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTGCCATTTCAATTACATTTTCACGCACGTGTAAGGAGAAACATTTCTGAACTGCTCACACATAAAAAAGAGGATAACTGAAAGCCGTTTTTGCTTTCTTTGAGTTCATCTGAGGTTCAAAGGATTAAAATTCGTTCTCAGTAGTCAGTATTGTCTTTTTTTGCTGAAAATGCCCCGGAGATTAATGTGGAATTGAAGCGTTGAATCTATCTAGGCTATACTTTTTACCACTAGCTTCAAATAAGGA</canonical_amplicon>
		<polymorphic_amplicon>GTTGCCATTTCAATTACATTTTCACGCACGTGTAAGGAGAAACATTTCTGAACTGCTCACACATAAAAAAGAGGATAACTGAAAGCCGTTTTTGCTTTCTTTGAGTTCATCTGAGGTTCAAAGGATTAAAATTCGTTCTCAGTAGTCAGTATTGTCTTTTTTTGCTGAAAATGCCCCGGAGATTAATRTGGAATTGAAGCGTTGAATCTATCTAGGCTATACTTTTTACCACTAGCTTCAAATAAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23013</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>156191</contig_pos>
        <strand>+</strand>
        <context>CTATTTAGKG[A/T]CATTTTCTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTTTGGCCATTCGAGACTATTTTCAAAGCCGTTTTCGGACTATTTAGGG</left_flank>
        <right_flank>CATTTTCTGCAAGTTATAAATTGAGCCGATTTTTCTCGGTTCTTGTCGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGACTGAAGGACATAAGAATAGAAGCGCAGAGGCAAAAGGACCCTCTCGTGTCGCTTCTTCTTTTTGTTGCCATTTCAATTACATTTTCACGCACGTGTAAGGAGAAACATTTCTGAACTGCTCACACATAAAAAAGAGGATAACTGAAAGCCGTTTTTGCTTTCTTTGAGTTCATCTGAGGTTCAAAGGATTAAAATTCGTTCTCAGTAGTCAGTATTGTCTTTTTTTGCTGAAAATGCCCCGGAGATTAATGTGGAATTGAAGCGTTGAATCTATCTAGGCTATACTTTTTACCACTAGCTTCAAATAAGGATAATGTGAACTTTTCTGTGACTTGATAAAATCTGAGCCAAGTTTTCTATTGTGATATTTTACCGTAAAACCTGTAATAAAAGAGCCCATAACCGTTTTTGCTGTCACTTGAACCATTTAAGCCATTTTTGACACCTTTTGGCCATTCGAGACTATTTTCAAAGCCGTTTTCGGACTATTTAGGGTCATTTTCTGCAAGTTATAAATTGAGCCGATTTTTCTCGGTTCTTGTCGAAAATTTAAAAATGTTGTCAACTTATAAAATTTTTATTAGAATTTCAATAATATTTTGTCAGTTGACCACTTTTTGATATCTTCCATAGGAAATTTAATAAATTAGCTCAAACTTGACTGGGTGGGCGCCCTTGTAATACAGGTTTCAAGATAATTCTATCGAGATCAGTTCATTTTCCGGTTACCTCATTGATGCTCTTATGAGCTTTCTATAATGCTACGTGCCAGTTGTTCACTTTTTATTGTGAAAACGGACACCTTTCGGACATTTATCCTTCGGTTCTCAAGACTATTGGGCCAAAAGTCTATACTCTCTTTCTCTTCTTCCCTATAAAATATTCCCCATGTATTCTGAATTCTGGTACATAGCAAAGTTAACTTTTTTGAAAAGGTCAGTCACATGTACCCTGTCTTCCCCTTCAACCCCTCCCCGTCAAATCTCATTGTATTGC</canonical>
            <polymorphic>AGGACTGAAGGACATAAGAATAGAAGCGCAGAGGCAAAAGGACCCTCTCGTGTCGCTTCTTCTTTTTGTTGCCATTTCAATTACATTTTCACGCACGTGTAAGGAGAAACATTTCTGAACTGCTCACACATAAAAAAGAGGATAACTGAAAGCCGTTTTTGCTTTCTTTGAGTTCATCTGAGGTTCAAAGGATTAAAATTCGTTCTCAGTAGTCAGTATTGTCTTTTTTTGCTGAAAATGCCCCGGAGATTAATGTGGAATTGAAGCGTTGAATCTATCTAGGCTATACTTTTTACCACTAGCTTCAAATAAGGATAATGTGAACTTTTCTGTGACTTGATAAAATCTGAGCCAAGTTTTCTATTGTGATATTTTACCGTAAAACCTGTAATAAAAGAGCCCATAACCGTTTTTGCTGTCACTTGAACCATTTAAGCCATTTTTGACACCTTTTGGCCATTCGAGACTATTTTCAAAGCCGTTTTCGGACTATTTAGGGWCATTTTCTGCAAGTTATAAATTGAGCCGATTTTTCTCGGTTCTTGTCGAAAATTTAAAAATGTTGTCAACTTATAAAATTTTTATTAGAATTTCAATAATATTTTGTCAGTTGACCACTTTTTGATATCTTCCATAGGAAATTTAATAAATTAGCTCAAACTTGACTGGGTGGGCGCCCTTGTAATACAGGTTTCAAGATAATTCTATCGAGATCAGTTCATTTTCCGGTTACCTCATTGATGCTCTTATGAGCTTTCTATAATGCTACGTGCCAGTTGTTCACTTTTTATTGTGAAAACGGACACCTTTCGGACATTTATCCTTCGGTTCTCAAGACTATTGGGCCAAAAGTCTATACTCTCTTTCTCTTCTTCCCTATAAAATATTCCCCATGTATTCTGAATTCTGGTACATAGCAAAGTTAACTTTTTTGAAAAGGTCAGTCACATGTACCCTGTCTTCCCCTTCAACCCCTCCCCGTCAAATCTCATTGTATTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGCCATTTTTGACACCTT</pcr_primer_p1>
		<pcr_primer_p2>GAACTGATCTCGATAGAATTATCTT</pcr_primer_p2>
		<pcr_amplicon_size>288</pcr_amplicon_size>
		<canonical_amplicon>TAAGCCATTTTTGACACCTTTTGGCCATTCGAGACTATTTTCAAAGCCGTTTTCGGACTATTTAGGGTCATTTTCTGCAAGTTATAAATTGAGCCGATTTTTCTCGGTTCTTGTCGAAAATTTAAAAATGTTGTCAACTTATAAAATTTTTATTAGAATTTCAATAATATTTTGTCAGTTGACCACTTTTTGATATCTTCCATAGGAAATTTAATAAATTAGCTCAAACTTGACTGGGTGGGCGCCCTTGTAATACAGGTTTCAAGATAATTCTATCGAGATCAGTTC</canonical_amplicon>
		<polymorphic_amplicon>TAAGCCATTTTTGACACCTTTTGGCCATTCGAGACTATTTTCAAAGCCGTTTTCGGACTATTTAGGGWCATTTTCTGCAAGTTATAAATTGAGCCGATTTTTCTCGGTTCTTGTCGAAAATTTAAAAATGTTGTCAACTTATAAAATTTTTATTAGAATTTCAATAATATTTTGTCAGTTGACCACTTTTTGATATCTTCCATAGGAAATTTAATAAATTAGCTCAAACTTGACTGGGTGGGCGCCCTTGTAATACAGGTTTCAAGATAATTCTATCGAGATCAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23014</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>156189</contig_pos>
        <strand>+</strand>
        <context>GACTATTTAG[G/T]GWCATTTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACCTTTTGGCCATTCGAGACTATTTTCAAAGCCGTTTTCGGACTATTTAG</left_flank>
        <right_flank>GTCATTTTCTGCAAGTTATAAATTGAGCCGATTTTTCTCGGTTCTTGTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGGACTGAAGGACATAAGAATAGAAGCGCAGAGGCAAAAGGACCCTCTCGTGTCGCTTCTTCTTTTTGTTGCCATTTCAATTACATTTTCACGCACGTGTAAGGAGAAACATTTCTGAACTGCTCACACATAAAAAAGAGGATAACTGAAAGCCGTTTTTGCTTTCTTTGAGTTCATCTGAGGTTCAAAGGATTAAAATTCGTTCTCAGTAGTCAGTATTGTCTTTTTTTGCTGAAAATGCCCCGGAGATTAATGTGGAATTGAAGCGTTGAATCTATCTAGGCTATACTTTTTACCACTAGCTTCAAATAAGGATAATGTGAACTTTTCTGTGACTTGATAAAATCTGAGCCAAGTTTTCTATTGTGATATTTTACCGTAAAACCTGTAATAAAAGAGCCCATAACCGTTTTTGCTGTCACTTGAACCATTTAAGCCATTTTTGACACCTTTTGGCCATTCGAGACTATTTTCAAAGCCGTTTTCGGACTATTTAGGGTCATTTTCTGCAAGTTATAAATTGAGCCGATTTTTCTCGGTTCTTGTCGAAAATTTAAAAATGTTGTCAACTTATAAAATTTTTATTAGAATTTCAATAATATTTTGTCAGTTGACCACTTTTTGATATCTTCCATAGGAAATTTAATAAATTAGCTCAAACTTGACTGGGTGGGCGCCCTTGTAATACAGGTTTCAAGATAATTCTATCGAGATCAGTTCATTTTCCGGTTACCTCATTGATGCTCTTATGAGCTTTCTATAATGCTACGTGCCAGTTGTTCACTTTTTATTGTGAAAACGGACACCTTTCGGACATTTATCCTTCGGTTCTCAAGACTATTGGGCCAAAAGTCTATACTCTCTTTCTCTTCTTCCCTATAAAATATTCCCCATGTATTCTGAATTCTGGTACATAGCAAAGTTAACTTTTTTGAAAAGGTCAGTCACATGTACCCTGTCTTCCCCTTCAACCCCTCCCCGTCAAATCTCATTGTATT</canonical>
            <polymorphic>GAAGGACTGAAGGACATAAGAATAGAAGCGCAGAGGCAAAAGGACCCTCTCGTGTCGCTTCTTCTTTTTGTTGCCATTTCAATTACATTTTCACGCACGTGTAAGGAGAAACATTTCTGAACTGCTCACACATAAAAAAGAGGATAACTGAAAGCCGTTTTTGCTTTCTTTGAGTTCATCTGAGGTTCAAAGGATTAAAATTCGTTCTCAGTAGTCAGTATTGTCTTTTTTTGCTGAAAATGCCCCGGAGATTAATGTGGAATTGAAGCGTTGAATCTATCTAGGCTATACTTTTTACCACTAGCTTCAAATAAGGATAATGTGAACTTTTCTGTGACTTGATAAAATCTGAGCCAAGTTTTCTATTGTGATATTTTACCGTAAAACCTGTAATAAAAGAGCCCATAACCGTTTTTGCTGTCACTTGAACCATTTAAGCCATTTTTGACACCTTTTGGCCATTCGAGACTATTTTCAAAGCCGTTTTCGGACTATTTAGKGTCATTTTCTGCAAGTTATAAATTGAGCCGATTTTTCTCGGTTCTTGTCGAAAATTTAAAAATGTTGTCAACTTATAAAATTTTTATTAGAATTTCAATAATATTTTGTCAGTTGACCACTTTTTGATATCTTCCATAGGAAATTTAATAAATTAGCTCAAACTTGACTGGGTGGGCGCCCTTGTAATACAGGTTTCAAGATAATTCTATCGAGATCAGTTCATTTTCCGGTTACCTCATTGATGCTCTTATGAGCTTTCTATAATGCTACGTGCCAGTTGTTCACTTTTTATTGTGAAAACGGACACCTTTCGGACATTTATCCTTCGGTTCTCAAGACTATTGGGCCAAAAGTCTATACTCTCTTTCTCTTCTTCCCTATAAAATATTCCCCATGTATTCTGAATTCTGGTACATAGCAAAGTTAACTTTTTTGAAAAGGTCAGTCACATGTACCCTGTCTTCCCCTTCAACCCCTCCCCGTCAAATCTCATTGTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGCCATTTTTGACACCTT</pcr_primer_p1>
		<pcr_primer_p2>GAACTGATCTCGATAGAATTATCTT</pcr_primer_p2>
		<pcr_amplicon_size>288</pcr_amplicon_size>
		<canonical_amplicon>TAAGCCATTTTTGACACCTTTTGGCCATTCGAGACTATTTTCAAAGCCGTTTTCGGACTATTTAGGGTCATTTTCTGCAAGTTATAAATTGAGCCGATTTTTCTCGGTTCTTGTCGAAAATTTAAAAATGTTGTCAACTTATAAAATTTTTATTAGAATTTCAATAATATTTTGTCAGTTGACCACTTTTTGATATCTTCCATAGGAAATTTAATAAATTAGCTCAAACTTGACTGGGTGGGCGCCCTTGTAATACAGGTTTCAAGATAATTCTATCGAGATCAGTTC</canonical_amplicon>
		<polymorphic_amplicon>TAAGCCATTTTTGACACCTTTTGGCCATTCGAGACTATTTTCAAAGCCGTTTTCGGACTATTTAGKGTCATTTTCTGCAAGTTATAAATTGAGCCGATTTTTCTCGGTTCTTGTCGAAAATTTAAAAATGTTGTCAACTTATAAAATTTTTATTAGAATTTCAATAATATTTTGTCAGTTGACCACTTTTTGATATCTTCCATAGGAAATTTAATAAATTAGCTCAAACTTGACTGGGTGGGCGCCCTTGTAATACAGGTTTCAAGATAATTCTATCGAGATCAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23015</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>156154</contig_pos>
        <strand>+</strand>
        <context>TTGGYCATTC[A/G]AGACTATTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGCTGTCACTTGAACCATTTAAGCCATTTTTGACACCTTTTGGCCATTC</left_flank>
        <right_flank>AGACTATTTTCAAAGCCGTTTTCGGACTATTTAGGGTCATTTTCTGCAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTGAGAGAAGAAGAAGAAGAACTAGTAGTCGTAGAAGGACTGAAGGACATAAGAATAGAAGCGCAGAGGCAAAAGGACCCTCTCGTGTCGCTTCTTCTTTTTGTTGCCATTTCAATTACATTTTCACGCACGTGTAAGGAGAAACATTTCTGAACTGCTCACACATAAAAAAGAGGATAACTGAAAGCCGTTTTTGCTTTCTTTGAGTTCATCTGAGGTTCAAAGGATTAAAATTCGTTCTCAGTAGTCAGTATTGTCTTTTTTTGCTGAAAATGCCCCGGAGATTAATGTGGAATTGAAGCGTTGAATCTATCTAGGCTATACTTTTTACCACTAGCTTCAAATAAGGATAATGTGAACTTTTCTGTGACTTGATAAAATCTGAGCCAAGTTTTCTATTGTGATATTTTACCGTAAAACCTGTAATAAAAGAGCCCATAACCGTTTTTGCTGTCACTTGAACCATTTAAGCCATTTTTGACACCTTTTGGCCATTCGAGACTATTTTCAAAGCCGTTTTCGGACTATTTAGGGTCATTTTCTGCAAGTTATAAATTGAGCCGATTTTTCTCGGTTCTTGTCGAAAATTTAAAAATGTTGTCAACTTATAAAATTTTTATTAGAATTTCAATAATATTTTGTCAGTTGACCACTTTTTGATATCTTCCATAGGAAATTTAATAAATTAGCTCAAACTTGACTGGGTGGGCGCCCTTGTAATACAGGTTTCAAGATAATTCTATCGAGATCAGTTCATTTTCCGGTTACCTCATTGATGCTCTTATGAGCTTTCTATAATGCTACGTGCCAGTTGTTCACTTTTTATTGTGAAAACGGACACCTTTCGGACATTTATCCTTCGGTTCTCAAGACTATTGGGCCAAAAGTCTATACTCTCTTTCTCTTCTTCCCTATAAAATATTCCCCATGTATTCTGAATTCTGGTACATAGCAAAGTTAACTTTTTTGAAAAGGTCAGTCACATGTACCCTGTCTTC</canonical>
            <polymorphic>AGTTGAGAGAAGAAGAAGAAGAACTAGTAGTCGTAGAAGGACTGAAGGACATAAGAATAGAAGCGCAGAGGCAAAAGGACCCTCTCGTGTCGCTTCTTCTTTTTGTTGCCATTTCAATTACATTTTCACGCACGTGTAAGGAGAAACATTTCTGAACTGCTCACACATAAAAAAGAGGATAACTGAAAGCCGTTTTTGCTTTCTTTGAGTTCATCTGAGGTTCAAAGGATTAAAATTCGTTCTCAGTAGTCAGTATTGTCTTTTTTTGCTGAAAATGCCCCGGAGATTAATGTGGAATTGAAGCGTTGAATCTATCTAGGCTATACTTTTTACCACTAGCTTCAAATAAGGATAATGTGAACTTTTCTGTGACTTGATAAAATCTGAGCCAAGTTTTCTATTGTGATATTTTACCGTAAAACCTGTAATAAAAGAGCCCATAACCGTTTTTGCTGTCACTTGAACCATTTAAGCCATTTTTGACACCTTTTGGCCATTCRAGACTATTTTCAAAGCCGTTTTCGGACTATTTAGGGTCATTTTCTGCAAGTTATAAATTGAGCCGATTTTTCTCGGTTCTTGTCGAAAATTTAAAAATGTTGTCAACTTATAAAATTTTTATTAGAATTTCAATAATATTTTGTCAGTTGACCACTTTTTGATATCTTCCATAGGAAATTTAATAAATTAGCTCAAACTTGACTGGGTGGGCGCCCTTGTAATACAGGTTTCAAGATAATTCTATCGAGATCAGTTCATTTTCCGGTTACCTCATTGATGCTCTTATGAGCTTTCTATAATGCTACGTGCCAGTTGTTCACTTTTTATTGTGAAAACGGACACCTTTCGGACATTTATCCTTCGGTTCTCAAGACTATTGGGCCAAAAGTCTATACTCTCTTTCTCTTCTTCCCTATAAAATATTCCCCATGTATTCTGAATTCTGGTACATAGCAAAGTTAACTTTTTTGAAAAGGTCAGTCACATGTACCCTGTCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 254 162 85</canonical_bands>
                <polymorphic_bands>584 254 162</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAACCGTTTTTGCTGTCAC</pcr_primer_p1>
		<pcr_primer_p2>GAACTGATCTCGATAGAATTATCTT</pcr_primer_p2>
		<pcr_amplicon_size>318</pcr_amplicon_size>
		<canonical_amplicon>ATAACCGTTTTTGCTGTCACTTGAACCATTTAAGCCATTTTTGACACCTTTTGGCCATTCGAGACTATTTTCAAAGCCGTTTTCGGACTATTTAGGGTCATTTTCTGCAAGTTATAAATTGAGCCGATTTTTCTCGGTTCTTGTCGAAAATTTAAAAATGTTGTCAACTTATAAAATTTTTATTAGAATTTCAATAATATTTTGTCAGTTGACCACTTTTTGATATCTTCCATAGGAAATTTAATAAATTAGCTCAAACTTGACTGGGTGGGCGCCCTTGTAATACAGGTTTCAAGATAATTCTATCGAGATCAGTTC</canonical_amplicon>
		<polymorphic_amplicon>ATAACCGTTTTTGCTGTCACTTGAACCATTTAAGCCATTTTTGACACCTTTTGGCCATTCRAGACTATTTTCAAAGCCGTTTTCGGACTATTTAGGGTCATTTTCTGCAAGTTATAAATTGAGCCGATTTTTCTCGGTTCTTGTCGAAAATTTAAAAATGTTGTCAACTTATAAAATTTTTATTAGAATTTCAATAATATTTTGTCAGTTGACCACTTTTTGATATCTTCCATAGGAAATTTAATAAATTAGCTCAAACTTGACTGGGTGGGCGCCCTTGTAATACAGGTTTCAAGATAATTCTATCGAGATCAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23016</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>156148</contig_pos>
        <strand>+</strand>
        <context>CACCTTTTGG[C/T]CATTCRAGAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGTTTTTGCTGTCACTTGAACCATTTAAGCCATTTTTGACACCTTTTGG</left_flank>
        <right_flank>CATTCGAGACTATTTTCAAAGCCGTTTTCGGACTATTTAGGGTCATTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGAATAGTTGAGAGAAGAAGAAGAAGAACTAGTAGTCGTAGAAGGACTGAAGGACATAAGAATAGAAGCGCAGAGGCAAAAGGACCCTCTCGTGTCGCTTCTTCTTTTTGTTGCCATTTCAATTACATTTTCACGCACGTGTAAGGAGAAACATTTCTGAACTGCTCACACATAAAAAAGAGGATAACTGAAAGCCGTTTTTGCTTTCTTTGAGTTCATCTGAGGTTCAAAGGATTAAAATTCGTTCTCAGTAGTCAGTATTGTCTTTTTTTGCTGAAAATGCCCCGGAGATTAATGTGGAATTGAAGCGTTGAATCTATCTAGGCTATACTTTTTACCACTAGCTTCAAATAAGGATAATGTGAACTTTTCTGTGACTTGATAAAATCTGAGCCAAGTTTTCTATTGTGATATTTTACCGTAAAACCTGTAATAAAAGAGCCCATAACCGTTTTTGCTGTCACTTGAACCATTTAAGCCATTTTTGACACCTTTTGGCCATTCGAGACTATTTTCAAAGCCGTTTTCGGACTATTTAGGGTCATTTTCTGCAAGTTATAAATTGAGCCGATTTTTCTCGGTTCTTGTCGAAAATTTAAAAATGTTGTCAACTTATAAAATTTTTATTAGAATTTCAATAATATTTTGTCAGTTGACCACTTTTTGATATCTTCCATAGGAAATTTAATAAATTAGCTCAAACTTGACTGGGTGGGCGCCCTTGTAATACAGGTTTCAAGATAATTCTATCGAGATCAGTTCATTTTCCGGTTACCTCATTGATGCTCTTATGAGCTTTCTATAATGCTACGTGCCAGTTGTTCACTTTTTATTGTGAAAACGGACACCTTTCGGACATTTATCCTTCGGTTCTCAAGACTATTGGGCCAAAAGTCTATACTCTCTTTCTCTTCTTCCCTATAAAATATTCCCCATGTATTCTGAATTCTGGTACATAGCAAAGTTAACTTTTTTGAAAAGGTCAGTCACATGTACCCT</canonical>
            <polymorphic>TAGAATAGTTGAGAGAAGAAGAAGAAGAACTAGTAGTCGTAGAAGGACTGAAGGACATAAGAATAGAAGCGCAGAGGCAAAAGGACCCTCTCGTGTCGCTTCTTCTTTTTGTTGCCATTTCAATTACATTTTCACGCACGTGTAAGGAGAAACATTTCTGAACTGCTCACACATAAAAAAGAGGATAACTGAAAGCCGTTTTTGCTTTCTTTGAGTTCATCTGAGGTTCAAAGGATTAAAATTCGTTCTCAGTAGTCAGTATTGTCTTTTTTTGCTGAAAATGCCCCGGAGATTAATGTGGAATTGAAGCGTTGAATCTATCTAGGCTATACTTTTTACCACTAGCTTCAAATAAGGATAATGTGAACTTTTCTGTGACTTGATAAAATCTGAGCCAAGTTTTCTATTGTGATATTTTACCGTAAAACCTGTAATAAAAGAGCCCATAACCGTTTTTGCTGTCACTTGAACCATTTAAGCCATTTTTGACACCTTTTGGYCATTCGAGACTATTTTCAAAGCCGTTTTCGGACTATTTAGGGTCATTTTCTGCAAGTTATAAATTGAGCCGATTTTTCTCGGTTCTTGTCGAAAATTTAAAAATGTTGTCAACTTATAAAATTTTTATTAGAATTTCAATAATATTTTGTCAGTTGACCACTTTTTGATATCTTCCATAGGAAATTTAATAAATTAGCTCAAACTTGACTGGGTGGGCGCCCTTGTAATACAGGTTTCAAGATAATTCTATCGAGATCAGTTCATTTTCCGGTTACCTCATTGATGCTCTTATGAGCTTTCTATAATGCTACGTGCCAGTTGTTCACTTTTTATTGTGAAAACGGACACCTTTCGGACATTTATCCTTCGGTTCTCAAGACTATTGGGCCAAAAGTCTATACTCTCTTTCTCTTCTTCCCTATAAAATATTCCCCATGTATTCTGAATTCTGGTACATAGCAAAGTTAACTTTTTTGAAAAGGTCAGTCACATGTACCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGGCCA</site>
                <isoschizomers>
                    <enzyme>BalI</enzyme>
                    <enzyme>MlsI</enzyme>
                    <enzyme>MluNI</enzyme>
                    <enzyme>MscI</enzyme>
                    <enzyme>Msp20I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>499 389 112</canonical_bands>
                <polymorphic_bands>888 112</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>195 131 129 112 99 92 49 48 47 37 22 20 19</canonical_bands>
                <polymorphic_bands>195 131 129 112 99 92 49 48 47 42 37 19</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAACCGTTTTTGCTGTCAC</pcr_primer_p1>
		<pcr_primer_p2>GAACTGATCTCGATAGAATTATCTT</pcr_primer_p2>
		<pcr_amplicon_size>318</pcr_amplicon_size>
		<canonical_amplicon>ATAACCGTTTTTGCTGTCACTTGAACCATTTAAGCCATTTTTGACACCTTTTGGCCATTCGAGACTATTTTCAAAGCCGTTTTCGGACTATTTAGGGTCATTTTCTGCAAGTTATAAATTGAGCCGATTTTTCTCGGTTCTTGTCGAAAATTTAAAAATGTTGTCAACTTATAAAATTTTTATTAGAATTTCAATAATATTTTGTCAGTTGACCACTTTTTGATATCTTCCATAGGAAATTTAATAAATTAGCTCAAACTTGACTGGGTGGGCGCCCTTGTAATACAGGTTTCAAGATAATTCTATCGAGATCAGTTC</canonical_amplicon>
		<polymorphic_amplicon>ATAACCGTTTTTGCTGTCACTTGAACCATTTAAGCCATTTTTGACACCTTTTGGYCATTCGAGACTATTTTCAAAGCCGTTTTCGGACTATTTAGGGTCATTTTCTGCAAGTTATAAATTGAGCCGATTTTTCTCGGTTCTTGTCGAAAATTTAAAAATGTTGTCAACTTATAAAATTTTTATTAGAATTTCAATAATATTTTGTCAGTTGACCACTTTTTGATATCTTCCATAGGAAATTTAATAAATTAGCTCAAACTTGACTGGGTGGGCGCCCTTGTAATACAGGTTTCAAGATAATTCTATCGAGATCAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23018</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>162416</contig_pos>
        <strand>+</strand>
        <context>TTCATCCATT[G/T]TAGGCATTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATTTGACGAGTAAGTTAGTTTTCTTCGCTGACGTTCTGATTCATCCATT</left_flank>
        <right_flank>TAGGCATTCAATCGATTCGCGCTAGATATCCAGATGATAAACATGGAAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTGAGCTTCCTAGATGACCTCAAGAAAACCGGTAGTATTCTTCTTCTCGATTCTTCTCATCCTTTTTGAAAATGGATCTATTATACGATTTCTACTTTATTCCTCTAAAACAATGGGGAATGGTCTATTTTATCACACCCCCTAGACAATTTTCGTTTCCACCCTTCCTGTCCAAAAAACATTCGAAACTGTCATCGCGAACAAAAAAAAAGAGCATATCCATAATGCGCGGGCACTTGCAAAAACTCCGCGCCGCAGTTGCGTTTTCGTCCAATAGCCCCGCCTCGCGACGTTGTCGGCCCGTAAATGCGTTCGCAATTGACTTTCACTACACATCGCCTGGCTCGCTGTTTCGGCCATCGATGCTCAGTTTTTGCTTCAACCAGTCATGACAGCTTATCGATTTTCGGGAAGACGCCAGTGTTCAGTCTTCAGAACAGACAGTTGCATTTGACGAGTAAGTTAGTTTTCTTCGCTGACGTTCTGATTCATCCATTTTAGGCATTCAATCGATTCGCGCTAGATATCCAGATGATAAACATGGAAAACACGAAGATGAGAGTCAGAAAAATCACAAACAGGCTGATGAGCAATTAAACGAGCAACAAAATGGTCCCAAGAAAATCGATCCCGCAACTAGTGAGTTGTTTTTTCTATTCAATGTTTTTTTTCCGGAAAGAGCTGATTCATTCGATAAATCGACAAGTAAAAATTTTCAGTCAGAAAGCTGAGAATGTACGTGTTGGCTGTTGCTGGTCTCTCGTTCGTCACATCGTTCTTGATGTTGTCACAGATGTTCACTGGAGATAGAAGTACTGCTGATGGTCTGACAAGTGAAGACTTCACAAGGTTTGTGAAAAAAACTGGCATCAGTAAAGATTCGATTCAGACCTGGGATCCCGATGAAAACATTTGTCGAAAAATATTTGAAGCACGGCGAGGTGAAACGAATCGTCTTCGTTCCTGCTAACGCGCGTGCTATTGCAATTCTGCACCCA</canonical>
            <polymorphic>CCTTGAGCTTCCTAGATGACCTCAAGAAAACCGGTAGTATTCTTCTTCTCGATTCTTCTCATCCTTTTTGAAAATGGATCTATTATACGATTTCTACTTTATTCCTCTAAAACAATGGGGAATGGTCTATTTTATCACACCCCCTAGACAATTTTCGTTTCCACCCTTCCTGTCCAAAAAACATTCGAAACTGTCATCGCGAACAAAAAAAAAGAGCATATCCATAATGCGCGGGCACTTGCAAAAACTCCGCGCCGCAGTTGCGTTTTCGTCCAATAGCCCCGCCTCGCGACGTTGTCGGCCCGTAAATGCGTTCGCAATTGACTTTCACTACACATCGCCTGGCTCGCTGTTTCGGCCATCGATGCTCAGTTTTTGCTTCAACCAGTCATGACAGCTTATCGATTTTCGGGAAGACGCCAGTGTTCAGTCTTCAGAACAGACAGTTGCATTTGACGAGTAAGTTAGTTTTCTTCGCTGACGTTCTGATTCATCCATTKTAGGCATTCAATCGATTCGCGCTAGATATCCAGATGATAAACATGGAAAACACGAAGATGAGAGTCAGAAAAATCACAAACAGGCTGATGAGCAATTAAACGAGCAACAAAATGGTCCCAAGAAAATCGATCCCGCAACTAGTGAGTTGTTTTTTCTATTCAATGTTTTTTTTCCGGAAAGAGCTGATTCATTCGATAAATCGACAAGTAAAAATTTTCAGTCAGAAAGCTGAGAATGTACGTGTTGGCTGTTGCTGGTCTCTCGTTCGTCACATCGTTCTTGATGTTGTCACAGATGTTCACTGGAGATAGAAGTACTGCTGATGGTCTGACAAGTGAAGACTTCACAAGGTTTGTGAAAAAAACTGGCATCAGTAAAGATTCGATTCAGACCTGGGATCCCGATGAAAACATTTGTCGAAAAATATTTGAAGCACGGCGAGGTGAAACGAATCGTCTTCGTTCCTGCTAACGCGCGTGCTATTGCAATTCTGCACCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCATTTGACGAGTAAGTTAGTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTATCGAATGAATCAGCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TGCATTTGACGAGTAAGTTAGTTTTCTTCGCTGACGTTCTGATTCATCCATTTTAGGCATTCAATCGATTCGCGCTAGATATCCAGATGATAAACATGGAAAACACGAAGATGAGAGTCAGAAAAATCACAAACAGGCTGATGAGCAATTAAACGAGCAACAAAATGGTCCCAAGAAAATCGATCCCGCAACTAGTGAGTTGTTTTTTCTATTCAATGTTTTTTTTCCGGAAAGAGCTGATTCATTCGATAAAT</canonical_amplicon>
		<polymorphic_amplicon>TGCATTTGACGAGTAAGTTAGTTTTCTTCGCTGACGTTCTGATTCATCCATTKTAGGCATTCAATCGATTCGCGCTAGATATCCAGATGATAAACATGGAAAACACGAAGATGAGAGTCAGAAAAATCACAAACAGGCTGATGAGCAATTAAACGAGCAACAAAATGGTCCCAAGAAAATCGATCCCGCAACTAGTGAGTTGTTTTTTCTATTCAATGTTTTTTTTCCGGAAAGAGCTGATTCATTCGATAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23019</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>165649</contig_pos>
        <strand>+</strand>
        <context>AAAGTGACCT[A/G]TCTATTATCC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTCACTATCATCGAAATTTGTCATTCTTTTTGTTATTTGAAAGTGACCT</left_flank>
        <right_flank>TCTATTATCCGAATTCAGTTGTCAGTTCCAGACACAATCAGATTTTTTCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCACTAAACCATTTCATTCCCATCTTTGAAGGTCATCTAAAGTTTTCAATCTATTTTTTTCAGACGAGATCGCGATCGTCGTTACTGAGCCGACCTATCTGTCTCAACCTTGGGTAACAAATTCGTTTCACTTTTGAAGTGGGGATCAAATCAACATCAAGAATCTTTTTTCATCAGTTTCTTTTCTATTCGTAAAACAATTTAATCTGTTTAAACATAATTTACCCAGATGAAATAAAACAGTTATATTCGAATTAAAACATATTTTCACTAGTAATAATGTGTGTTTCTACACGAAGTACACGAATATCTGTTGCTATGTCAACAACAAGTAACCAAAGGAAAATCAAGGAAGAAGGAGCACAAACCAATATTTGGTCTGGCTACAACGCTATAGTTGTAGTCCGTGGTGCTGTACTGACTCATCGCTCTCCTTTCTCTATATTTCTCTCACTATCATCGAAATTTGTCATTCTTTTTGTTATTTGAAAGTGACCTGTCTATTATCCGAATTCAGTTGTCAGTTCCAGACACAATCAGATTTTTTCAGGATATGATCCGCAGACGTGGAGGACCTAATGAGTCTCGGGCTGAACCAAATAACATCTCGAACGATGACGATGACCAGAGAACAAAACGAGGAAGAGTTCGTTTAAAATCTAAATTTCTTCCTAAAACATTTCATTTTGATTCCAGGAATCGATCGGTTTTCGTCACTGGATCATTTTCGTCTTAACCGTTGCAATCGTCTATGCTGGAGTCGTTGCATTGCATCGAAAGATGCCTGCTGTCCGAGATGCATCTTCGTTTGATGAGTTCAGTGAGCAAAGAGCCCGTGTCCTGCTCAAACAACTGACCGCTCTTGGCCCACGGCCCAGTGGATCAGCAAATTTGGAAGTGAGAAAATGTGTAACGACGCGTAAATTAGATTTCGATTGAATTTCAGGAAAAAGCCTTTGGCATGATTCAAGACCGTATTGAAAAAGTTCGTTCGGTGGT</canonical>
            <polymorphic>TTCACTAAACCATTTCATTCCCATCTTTGAAGGTCATCTAAAGTTTTCAATCTATTTTTTTCAGACGAGATCGCGATCGTCGTTACTGAGCCGACCTATCTGTCTCAACCTTGGGTAACAAATTCGTTTCACTTTTGAAGTGGGGATCAAATCAACATCAAGAATCTTTTTTCATCAGTTTCTTTTCTATTCGTAAAACAATTTAATCTGTTTAAACATAATTTACCCAGATGAAATAAAACAGTTATATTCGAATTAAAACATATTTTCACTAGTAATAATGTGTGTTTCTACACGAAGTACACGAATATCTGTTGCTATGTCAACAACAAGTAACCAAAGGAAAATCAAGGAAGAAGGAGCACAAACCAATATTTGGTCTGGCTACAACGCTATAGTTGTAGTCCGTGGTGCTGTACTGACTCATCGCTCTCCTTTCTCTATATTTCTCTCACTATCATCGAAATTTGTCATTCTTTTTGTTATTTGAAAGTGACCTRTCTATTATCCGAATTCAGTTGTCAGTTCCAGACACAATCAGATTTTTTCAGGATATGATCCGCAGACGTGGAGGACCTAATGAGTCTCGGGCTGAACCAAATAACATCTCGAACGATGACGATGACCAGAGAACAAAACGAGGAAGAGTTCGTTTAAAATCTAAATTTCTTCCTAAAACATTTCATTTTGATTCCAGGAATCGATCGGTTTTCGTCACTGGATCATTTTCGTCTTAACCGTTGCAATCGTCTATGCTGGAGTCGTTGCATTGCATCGAAAGATGCCTGCTGTCCGAGATGCATCTTCGTTTGATGAGTTCAGTGAGCAAAGAGCCCGTGTCCTGCTCAAACAACTGACCGCTCTTGGCCCACGGCCCAGTGGATCAGCAAATTTGGAAGTGAGAAAATGTGTAACGACGCGTAAATTAGATTTCGATTGAATTTCAGGAAAAAGCCTTTGGCATGATTCAAGACCGTATTGAAAAAGTTCGTTCGGTGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGCTCTCCTTTCTCTATATTT</pcr_primer_p1>
		<pcr_primer_p2>AGATTTTAAACGAACTCTTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>ATCGCTCTCCTTTCTCTATATTTCTCTCACTATCATCGAAATTTGTCATTCTTTTTGTTATTTGAAAGTGACCTGTCTATTATCCGAATTCAGTTGTCAGTTCCAGACACAATCAGATTTTTTCAGGATATGATCCGCAGACGTGGAGGACCTAATGAGTCTCGGGCTGAACCAAATAACATCTCGAACGATGACGATGACCAGAGAACAAAACGAGGAAGAGTTCGTTTAAAATCT</canonical_amplicon>
		<polymorphic_amplicon>ATCGCTCTCCTTTCTCTATATTTCTCTCACTATCATCGAAATTTGTCATTCTTTTTGTTATTTGAAAGTGACCTRTCTATTATCCGAATTCAGTTGTCAGTTCCAGACACAATCAGATTTTTTCAGGATATGATCCGCAGACGTGGAGGACCTAATGAGTCTCGGGCTGAACCAAATAACATCTCGAACGATGACGATGACCAGAGAACAAAACGAGGAAGAGTTCGTTTAAAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23020</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>165490</contig_pos>
        <strand>+</strand>
        <context>AAGTAACCAA[A/G]GGAAAATCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTACACGAAGTACACGAATATCTGTTGCTATGTCAACAACAAGTAACCAA</left_flank>
        <right_flank>GGAAAATCAAGGAAGAAGGAGCACAAACCAATATTTGGTCTGGCTACAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGCGAACGTTCCTACAGAAGAGACGACAGAGATCGTAGATACGACCGGGACAGTCGTGACAGGTACTAAAAAAATTATAAAGATTGTCAAAAGTTTCGCACCAAGTTATCAATCATTGAGATTCATTTTTCGTTTCACAGAAATAGATAATGACCTCGTTCACTAAACCATTTCATTCCCATCTTTGAAGGTCATCTAAAGTTTTCAATCTATTTTTTTCAGACGAGATCGCGATCGTCGTTACTGAGCCGACCTATCTGTCTCAACCTTGGGTAACAAATTCGTTTCACTTTTGAAGTGGGGATCAAATCAACATCAAGAATCTTTTTTCATCAGTTTCTTTTCTATTCGTAAAACAATTTAATCTGTTTAAACATAATTTACCCAGATGAAATAAAACAGTTATATTCGAATTAAAACATATTTTCACTAGTAATAATGTGTGTTTCTACACGAAGTACACGAATATCTGTTGCTATGTCAACAACAAGTAACCAAAGGAAAATCAAGGAAGAAGGAGCACAAACCAATATTTGGTCTGGCTACAACGCTATAGTTGTAGTCCGTGGTGCTGTACTGACTCATCGCTCTCCTTTCTCTATATTTCTCTCACTATCATCGAAATTTGTCATTCTTTTTGTTATTTGAAAGTGACCTGTCTATTATCCGAATTCAGTTGTCAGTTCCAGACACAATCAGATTTTTTCAGGATATGATCCGCAGACGTGGAGGACCTAATGAGTCTCGGGCTGAACCAAATAACATCTCGAACGATGACGATGACCAGAGAACAAAACGAGGAAGAGTTCGTTTAAAATCTAAATTTCTTCCTAAAACATTTCATTTTGATTCCAGGAATCGATCGGTTTTCGTCACTGGATCATTTTCGTCTTAACCGTTGCAATCGTCTATGCTGGAGTCGTTGCATTGCATCGAAAGATGCCTGCTGTCCGAGATGCATCTTCGTTTGATGAGTTCAGTGAGCAAAGAGCCCGTGTC</canonical>
            <polymorphic>GCGCGAACGTTCCTACAGAAGAGACGACAGAGATCGTAGATACGACCGGGACAGTCGTGACAGGTACTAAAAAAATTATAAAGATTGTCAAAAGTTTCGCACCAAGTTATCAATCATTGAGATTCATTTTTCGTTTCACAGAAATAGATAATGACCTCGTTCACTAAACCATTTCATTCCCATCTTTGAAGGTCATCTAAAGTTTTCAATCTATTTTTTTCAGACGAGATCGCGATCGTCGTTACTGAGCCGACCTATCTGTCTCAACCTTGGGTAACAAATTCGTTTCACTTTTGAAGTGGGGATCAAATCAACATCAAGAATCTTTTTTCATCAGTTTCTTTTCTATTCGTAAAACAATTTAATCTGTTTAAACATAATTTACCCAGATGAAATAAAACAGTTATATTCGAATTAAAACATATTTTCACTAGTAATAATGTGTGTTTCTACACGAAGTACACGAATATCTGTTGCTATGTCAACAACAAGTAACCAARGGAAAATCAAGGAAGAAGGAGCACAAACCAATATTTGGTCTGGCTACAACGCTATAGTTGTAGTCCGTGGTGCTGTACTGACTCATCGCTCTCCTTTCTCTATATTTCTCTCACTATCATCGAAATTTGTCATTCTTTTTGTTATTTGAAAGTGACCTGTCTATTATCCGAATTCAGTTGTCAGTTCCAGACACAATCAGATTTTTTCAGGATATGATCCGCAGACGTGGAGGACCTAATGAGTCTCGGGCTGAACCAAATAACATCTCGAACGATGACGATGACCAGAGAACAAAACGAGGAAGAGTTCGTTTAAAATCTAAATTTCTTCCTAAAACATTTCATTTTGATTCCAGGAATCGATCGGTTTTCGTCACTGGATCATTTTCGTCTTAACCGTTGCAATCGTCTATGCTGGAGTCGTTGCATTGCATCGAAAGATGCCTGCTGTCCGAGATGCATCTTCGTTTGATGAGTTCAGTGAGCAAAGAGCCCGTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTACCCAGATGAAATAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>ACAAATTTCGATGATAGTGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTACCCAGATGAAATAAAACAGTTATATTCGAATTAAAACATATTTTCACTAGTAATAATGTGTGTTTCTACACGAAGTACACGAATATCTGTTGCTATGTCAACAACAAGTAACCAAAGGAAAATCAAGGAAGAAGGAGCACAAACCAATATTTGGTCTGGCTACAACGCTATAGTTGTAGTCCGTGGTGCTGTACTGACTCATCGCTCTCCTTTCTCTATATTTCTCTCACTATCATCGAAATTTGT</canonical_amplicon>
		<polymorphic_amplicon>TTTACCCAGATGAAATAAAACAGTTATATTCGAATTAAAACATATTTTCACTAGTAATAATGTGTGTTTCTACACGAAGTACACGAATATCTGTTGCTATGTCAACAACAAGTAACCAARGGAAAATCAAGGAAGAAGGAGCACAAACCAATATTTGGTCTGGCTACAACGCTATAGTTGTAGTCCGTGGTGCTGTACTGACTCATCGCTCTCCTTTCTCTATATTTCTCTCACTATCATCGAAATTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23021</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>165341</contig_pos>
        <strand>+</strand>
        <context>CTTTTCTATT[C/T]GTAAAACAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGGATCAAATCAACATCAAGAATCTTTTTTCATCAGTTTCTTTTCTATT</left_flank>
        <right_flank>GTAAAACAATTTAATCTGTTTAAACATAATTTACCCAGATGAAATAAAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGATACTTACGCAAGGTAAAATTAGTTAAACATTCATCCGATTCGAGAATTATGCTTCTTCAGACGTGACAGAGATCGAGGAGACTACCGAGGCGACCGTGATCGTGATCGTGATCGTGACCGTCGTAACCGCGACAGAAGCCGTTCGCGCGAACGTTCCTACAGAAGAGACGACAGAGATCGTAGATACGACCGGGACAGTCGTGACAGGTACTAAAAAAATTATAAAGATTGTCAAAAGTTTCGCACCAAGTTATCAATCATTGAGATTCATTTTTCGTTTCACAGAAATAGATAATGACCTCGTTCACTAAACCATTTCATTCCCATCTTTGAAGGTCATCTAAAGTTTTCAATCTATTTTTTTCAGACGAGATCGCGATCGTCGTTACTGAGCCGACCTATCTGTCTCAACCTTGGGTAACAAATTCGTTTCACTTTTGAAGTGGGGATCAAATCAACATCAAGAATCTTTTTTCATCAGTTTCTTTTCTATTCGTAAAACAATTTAATCTGTTTAAACATAATTTACCCAGATGAAATAAAACAGTTATATTCGAATTAAAACATATTTTCACTAGTAATAATGTGTGTTTCTACACGAAGTACACGAATATCTGTTGCTATGTCAACAACAAGTAACCAAAGGAAAATCAAGGAAGAAGGAGCACAAACCAATATTTGGTCTGGCTACAACGCTATAGTTGTAGTCCGTGGTGCTGTACTGACTCATCGCTCTCCTTTCTCTATATTTCTCTCACTATCATCGAAATTTGTCATTCTTTTTGTTATTTGAAAGTGACCTGTCTATTATCCGAATTCAGTTGTCAGTTCCAGACACAATCAGATTTTTTCAGGATATGATCCGCAGACGTGGAGGACCTAATGAGTCTCGGGCTGAACCAAATAACATCTCGAACGATGACGATGACCAGAGAACAAAACGAGGAAGAGTTCGTTTAAAATCTAAATTTCTTCCTAAAACATTTCATTTTGAT</canonical>
            <polymorphic>AGAGATACTTACGCAAGGTAAAATTAGTTAAACATTCATCCGATTCGAGAATTATGCTTCTTCAGACGTGACAGAGATCGAGGAGACTACCGAGGCGACCGTGATCGTGATCGTGATCGTGACCGTCGTAACCGCGACAGAAGCCGTTCGCGCGAACGTTCCTACAGAAGAGACGACAGAGATCGTAGATACGACCGGGACAGTCGTGACAGGTACTAAAAAAATTATAAAGATTGTCAAAAGTTTCGCACCAAGTTATCAATCATTGAGATTCATTTTTCGTTTCACAGAAATAGATAATGACCTCGTTCACTAAACCATTTCATTCCCATCTTTGAAGGTCATCTAAAGTTTTCAATCTATTTTTTTCAGACGAGATCGCGATCGTCGTTACTGAGCCGACCTATCTGTCTCAACCTTGGGTAACAAATTCGTTTCACTTTTGAAGTGGGGATCAAATCAACATCAAGAATCTTTTTTCATCAGTTTCTTTTCTATTYGTAAAACAATTTAATCTGTTTAAACATAATTTACCCAGATGAAATAAAACAGTTATATTCGAATTAAAACATATTTTCACTAGTAATAATGTGTGTTTCTACACGAAGTACACGAATATCTGTTGCTATGTCAACAACAAGTAACCAAAGGAAAATCAAGGAAGAAGGAGCACAAACCAATATTTGGTCTGGCTACAACGCTATAGTTGTAGTCCGTGGTGCTGTACTGACTCATCGCTCTCCTTTCTCTATATTTCTCTCACTATCATCGAAATTTGTCATTCTTTTTGTTATTTGAAAGTGACCTGTCTATTATCCGAATTCAGTTGTCAGTTCCAGACACAATCAGATTTTTTCAGGATATGATCCGCAGACGTGGAGGACCTAATGAGTCTCGGGCTGAACCAAATAACATCTCGAACGATGACGATGACCAGAGAACAAAACGAGGAAGAGTTCGTTTAAAATCTAAATTTCTTCCTAAAACATTTCATTTTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGACCTATCTGTCTCAACCTT</pcr_primer_p1>
		<pcr_primer_p2>TTGGTTACTTGTTGTTGACATAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGACCTATCTGTCTCAACCTTGGGTAACAAATTCGTTTCACTTTTGAAGTGGGGATCAAATCAACATCAAGAATCTTTTTTCATCAGTTTCTTTTCTATTCGTAAAACAATTTAATCTGTTTAAACATAATTTACCCAGATGAAATAAAACAGTTATATTCGAATTAAAACATATTTTCACTAGTAATAATGTGTGTTTCTACACGAAGTACACGAATATCTGTTGCTATGTCAACAACAAGTAACCAA</canonical_amplicon>
		<polymorphic_amplicon>CGACCTATCTGTCTCAACCTTGGGTAACAAATTCGTTTCACTTTTGAAGTGGGGATCAAATCAACATCAAGAATCTTTTTTCATCAGTTTCTTTTCTATTYGTAAAACAATTTAATCTGTTTAAACATAATTTACCCAGATGAAATAAAACAGTTATATTCGAATTAAAACATATTTTCACTAGTAATAATGTGTGTTTCTACACGAAGTACACGAATATCTGTTGCTATGTCAACAACAAGTAACCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23022</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>175903</contig_pos>
        <strand>+</strand>
        <context>TTGAATAAAA[A/C]ATAGGAACTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGGTGAGCTTTAAAGAAGTACTGTAATAATTTGGATTTTTTGAATAAAA</left_flank>
        <right_flank>ATAGGAACTTTGCAGTAAGTTTTTTGATGTTAATCCTAAAATTTTTTTAT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGTGATTGAAAGATAGAAAAACGCGATTGAATTCCACTCCATTGTCTTCTTTTCCCGAAAAAGCGAATTCTATCATCATTTCCCCGTCGTTCTCCAGTCTCTTTTGTCCATTGTTTCAAGAAGGCAAAAGCCTTCTGTCTCGATCCAGGTCAGCAACTCGTTTTCCTATCACTTTCACCTGGCTTCATCATCTCTATTCTCGAAGCTTAACGACGCCCATTCACTCAGTCTCGAAGCTAATCACAATCACTGATGGTGATGAACCCATTAACCGCAACTCTACTGGCCGCCCTTATTGGCACTGCTGCTTCTGCATCGTGCGGTTCATCTGGAATTCCATTCAGATTTGAAGTTCTCCCATCGGGACAACCGGTACTTGGATGTGGATCTCCAACTTGTTTCGGCTCTGAAAATGGTGGAAAAGATTTGAGACATGATTCTAATTTTATGGTGAGCTTTAAAGAAGTACTGTAATAATTTGGATTTTTTGAATAAAACATAGGAACTTTGCAGTAAGTTTTTTGATGTTAATCCTAAAATTTTTTTATCCAAAAATCCATAATTAGTTGCACTCTTTAAAAAAGACAAACCCAAAAACTGATCATCGAAATTCCACCGTATGAATTTATCTTTTCCCACAAACCTGCTTTGCTAACGTTTCCGTTATAAAGTGCGATGTCTATTTGAACTGATAAGAAGATAAAACATGTTTCTTTACAGGCCGGTCCAGATGGAGATGATGGTTTCTTCCGTGAGGGAGATCTTGCACGTGTTCGTGTTCGCCATTCAGATGCTCCTGCTCAGATGGCTAACTGCCCAAGAGAATTCTCTTCCTCTACTTGCTCAAACCCAATGACATGGGTTGGAGGATTCAAGGCTAGCGAGAATGGAGAGTGAGTATTCTCCAAATCAAATGAGCTTGTATTCTATAATATTCAGTCTTTCACTTCAATGCTGTCATTACGAAGGACTTCGTTTTGCTCAAGAAGTCGGACGTC</canonical>
            <polymorphic>TCAGTGATTGAAAGATAGAAAAACGCGATTGAATTCCACTCCATTGTCTTCTTTTCCCGAAAAAGCGAATTCTATCATCATTTCCCCGTCGTTCTCCAGTCTCTTTTGTCCATTGTTTCAAGAAGGCAAAAGCCTTCTGTCTCGATCCAGGTCAGCAACTCGTTTTCCTATCACTTTCACCTGGCTTCATCATCTCTATTCTCGAAGCTTAACGACGCCCATTCACTCAGTCTCGAAGCTAATCACAATCACTGATGGTGATGAACCCATTAACCGCAACTCTACTGGCCGCCCTTATTGGCACTGCTGCTTCTGCATCGTGCGGTTCATCTGGAATTCCATTCAGATTTGAAGTTCTCCCATCGGGACAACCGGTACTTGGATGTGGATCTCCAACTTGTTTCGGCTCTGAAAATGGTGGAAAAGATTTGAGACATGATTCTAATTTTATGGTGAGCTTTAAAGAAGTACTGTAATAATTTGGATTTTTTGAATAAAAMATAGGAACTTTGCAGTAAGTTTTTTGATGTTAATCCTAAAATTTTTTTATCCAAAAATCCATAATTAGTTGCACTCTTTAAAAAAGACAAACCCAAAAACTGATCATCGAAATTCCACCGTATGAATTTATCTTTTCCCACAAACCTGCTTTGCTAACGTTTCCGTTATAAAGTGCGATGTCTATTTGAACTGATAAGAAGATAAAACATGTTTCTTTACAGGCCGGTCCAGATGGAGATGATGGTTTCTTCCGTGAGGGAGATCTTGCACGTGTTCGTGTTCGCCATTCAGATGCTCCTGCTCAGATGGCTAACTGCCCAAGAGAATTCTCTTCCTCTACTTGCTCAAACCCAATGACATGGGTTGGAGGATTCAAGGCTAGCGAGAATGGAGAGTGAGTATTCTCCAAATCAAATGAGCTTGTATTCTATAATATTCAGTCTTTCACTTCAATGCTGTCATTACGAAGGACTTCGTTTTGCTCAAGAAGTCGGACGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTATGGTGAGCTTTAAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCAAATAGACATCGCACTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTTATGGTGAGCTTTAAAGAAGTACTGTAATAATTTGGATTTTTTGAATAAAACATAGGAACTTTGCAGTAAGTTTTTTGATGTTAATCCTAAAATTTTTTTATCCAAAAATCCATAATTAGTTGCACTCTTTAAAAAAGACAAACCCAAAAACTGATCATCGAAATTCCACCGTATGAATTTATCTTTTCCCACAAACCTGCTTTGCTAACGTTTCCGTTATAAAGTGCGATGTCTATTTGAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTATGGTGAGCTTTAAAGAAGTACTGTAATAATTTGGATTTTTTGAATAAAAMATAGGAACTTTGCAGTAAGTTTTTTGATGTTAATCCTAAAATTTTTTTATCCAAAAATCCATAATTAGTTGCACTCTTTAAAAAAGACAAACCCAAAAACTGATCATCGAAATTCCACCGTATGAATTTATCTTTTCCCACAAACCTGCTTTGCTAACGTTTCCGTTATAAAGTGCGATGTCTATTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23023</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>176306</contig_pos>
        <strand></strand>
        <context>AGAGTGAGTA[T/G]KCTCCAAATC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CAATGACATGGGTTGGAGGATTCAAGGCTAGCGAGAATGGAGAGTGAGTA</left_flank>
        <right_flank>TCTCCAAATCAAATGAGCTTGTATTCTATAATATTCAGTCTTTCACTTCA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGCTCTGAAAATGGTGGAAAAGATTTGAGACATGATTCTAATTTTATGGTGAGCTTTAAAGAAGTACTGTAATAATTTGGATTTTTTGAATAAAACATAGGAACTTTGCAGTAAGTTTTTTGATGTTAATCCTAAAATTTTTTTATCCAAAAATCCATAATTAGTTGCACTCTTTAAAAAAGACAAACCCAAAAACTGATCATCGAAATTCCACCGTATGAATTTATCTTTTCCCACAAACCTGCTTTGCTAACGTTTCCGTTATAAAGTGCGATGTCTATTTGAACTGATAAGAAGATAAAACATGTTTCTTTACAGGCCGGTCCAGATGGAGATGATGGTTTCTTCCGTGAGGGAGATCTTGCACGTGTTCGTGTTCGCCATTCAGATGCTCCTGCTCAGATGGCTAACTGCCCAAGAGAATTCTCTTCCTCTACTTGCTCAAACCCAATGACATGGGTTGGAGGATTCAAGGCTAGCGAGAATGGAGAGTGAGTATTCTCCAAATCAAATGAGCTTGTATTCTATAATATTCAGTCTTTCACTTCAATGCTGTCATTACGAAGGACTTCGTTTTGCTCAAGAAGTCGGACGTCCAGTTGTTCATCCAGGAGAGGTTTATTCCGGAGGAGAAGTTCTTCGTGATGGACGTCAAACTGGATTCGATGCTATTTCAAATGTTAAGAAGATCACTTCTGGGGACGGAACGTAAGTTAAATCTTCACCCAGTTCACATATAAAATCAATCCGTTTTAGTGTTGCCTATGAACTTACCGTAACCCGTATGAACTGCCTCCCAAATCCAGCTGAAGACACCAATGAAGTCTCATTCGATATTCAGAGAGACATTGGAAGAATTCTTGAGAAAGTCGGAGAAACTGCTGCCAGCGGAGTTCAAACCAACCAAATTGAAGCTGACCAACGTCTTTCTCCATCCACTGATGTCCAATCTGATTCCTATAAATCTGATTCCTATGTAGCACCACCTGAGTCTGACCA</canonical>
            <polymorphic>CGGCTCTGAAAATGGTGGAAAAGATTTGAGACATGATTCTAATTTTATGGTGAGCTTTAAAGAAGTACTGTAATAATTTGGATTTTTTGAATAAAACATAGGAACTTTGCAGTAAGTTTTTTGATGTTAATCCTAAAATTTTTTTATCCAAAAATCCATAATTAGTTGCACTCTTTAAAAAAGACAAACCCAAAAACTGATCATCGAAATTCCACCGTATGAATTTATCTTTTCCCACAAACCTGCTTTGCTAACGTTTCCGTTATAAAGTGCGATGTCTATTTGAACTGATAAGAAGATAAAACATGTTTCTTTACAGGCCGGTCCAGATGGAGATGATGGTTTCTTCCGTGAGGGAGATCTTGCACGTGTTCGTGTTCGCCATTCAGATGCTCCTGCTCAGATGGCTAACTGCCCAAGAGAATTCTCTTCCTCTACTTGCTCAAACCCAATGACATGGGTTGGAGGATTCAAGGCTAGCGAGAATGGAGAGTGAGTAKTCTCCAAATCAAATGAGCTTGTATTCTATAATATTCAGTCTTTCACTTCAATGCTGTCATTACGAAGGACTTCGTTTTGCTCAAGAAGTCGGACGTCCAGTTGTTCATCCAGGAGAGGTTTATTCCGGAGGAGAAGTTCTTCGTGATGGACGTCAAACTGGATTCGATGCTATTTCAAATGTTAAGAAGATCACTTCTGGGGACGGAACGTAAGTTAAATCTTCACCCAGTTCACATATAAAATCAATCCGTTTTAGTGTTGCCTATGAACTTACCGTAACCCGTATGAACTGCCTCCCAAATCCAGCTGAAGACACCAATGAAGTCTCATTCGATATTCAGAGAGACATTGGAAGAATTCTTGAGAAAGTCGGAGAAACTGCTGCCAGCGGAGTTCAAACCAACCAAATTGAAGCTGACCAACGTCTTTCTCCATCCACTGATGTCCAATCTGATTCCTATAAATCTGATTCCTATGTAGCACCACCTGAGTCTGACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTTCCTCTACTTGCTCAAAC</pcr_primer_p1>
		<pcr_primer_p2>GAAATAGCATCGAATCCAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTTCCTCTACTTGCTCAAACCCAATGACATGGGTTGGAGGATTCAAGGCTAGCGAGAATGGAGAGTGAGTATTCTCCAAATCAAATGAGCTTGTATTCTATAATATTCAGTCTTTCACTTCAATGCTGTCATTACGAAGGACTTCGTTTTGCTCAAGAAGTCGGACGTCCAGTTGTTCATCCAGGAGAGGTTTATTCCGGAGGAGAAGTTCTTCGTGATGGACGTCAAACTGGATTCGATGCTATTTC</canonical_amplicon>
		<polymorphic_amplicon>CTCTTCCTCTACTTGCTCAAACCCAATGACATGGGTTGGAGGATTCAAGGCTAGCGAGAATGGAGAGTGAGTAKTCTCCAAATCAAATGAGCTTGTATTCTATAATATTCAGTCTTTCACTTCAATGCTGTCATTACGAAGGACTTCGTTTTGCTCAAGAAGTCGGACGTCCAGTTGTTCATCCAGGAGAGGTTTATTCCGGAGGAGAAGTTCTTCGTGATGGACGTCAAACTGGATTCGATGCTATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23024</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>178558</contig_pos>
        <strand>+</strand>
        <context>GATAACGAAG[G/T]GGGTTGAAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGACGAACTCCGGTGGATTGTCTTGGGAAGTGTGGTGGGCGATAACGAAG</left_flank>
        <right_flank>GGGTTGAAGGCTTTTGGCTCTGGAGTTGTCTGAAATAAGAAAAGTTTATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATATAATTTTTCTTGGAAACCTCTCTGTTATTCCGAACGGACGATTGGCGGCTGAACGGCGGCTGAGGCTACTGACGGGTGAAAGTAGGAAGAGATTGAAAAATGATTTTTTGTCTATTTTGATATTCTTCGTTCTTTCTATGCGTCTTTTTCAATTATATTAATCGTACTTATGAGGTCTGGGTTTCTATTCCGTTGGAAACGAAATTTCAACACAGTTATTTCATTTCTTTTCCATCATCATGAGCCCATCTTCCCAATCCTATGATAATTGAAAAATATTCATTATTATCATTATCATTGAAATTATTAAATGTACAAACTCGTTTTGATAGGGACTCATTGGATTGAGTGAATGGAGGGGAATGAAAAAGGGAAAGATCATCGAAATTGATAGGAAAGAAGAAAAGAAAGAAGTCTAGATAAATGGATAACACGAGTTTAGGACCGACGAACTCCGGTGGATTGTCTTGGGAAGTGTGGTGGGCGATAACGAAGTGGGTTGAAGGCTTTTGGCTCTGGAGTTGTCTGAAATAAGAAAAGTTTATTTATGTCAAAAATACAATCAACTAACCGTAACCTCCTCTTCCTCGTCCTCCTCCTCAACTTCTTCCTCTCCGTCGTTGCTCTCAACAACTTCAGCTACATTCTCATTTGTTTGTTCTTCTCCTTCCAATTGCTCATTCTCATCCTCTTCCTCCTCAACAACTGGTGTAGTTGGTTCTGGAGTGGTCGTCTTGACAACCTTTGGAACAGCTGTGGTAGTGATTGGCTCAAAGTCAACTGGCTTCTCTCCCTTAGCACAAATCATACGGTAAACCCAAACACGGACTCCTCCTCTACAAAATTTCAAAACTAAATACAATTTATCTCATTCGTATAACTCACTGTTCAGTTCTGGCGTTAGCAACAAAATCGTATTCGGCTCCTCCCTTGTCTCCGTAAAGATCCTTCTCGGCAACTTCTCCACCCTCGTAGAAGCTTCCAGCAGACACAACA</canonical>
            <polymorphic>AATATAATTTTTCTTGGAAACCTCTCTGTTATTCCGAACGGACGATTGGCGGCTGAACGGCGGCTGAGGCTACTGACGGGTGAAAGTAGGAAGAGATTGAAAAATGATTTTTTGTCTATTTTGATATTCTTCGTTCTTTCTATGCGTCTTTTTCAATTATATTAATCGTACTTATGAGGTCTGGGTTTCTATTCCGTTGGAAACGAAATTTCAACACAGTTATTTCATTTCTTTTCCATCATCATGAGCCCATCTTCCCAATCCTATGATAATTGAAAAATATTCATTATTATCATTATCATTGAAATTATTAAATGTACAAACTCGTTTTGATAGGGACTCATTGGATTGAGTGAATGGAGGGGAATGAAAAAGGGAAAGATCATCGAAATTGATAGGAAAGAAGAAAAGAAAGAAGTCTAGATAAATGGATAACACGAGTTTAGGACCGACGAACTCCGGTGGATTGTCTTGGGAAGTGTGGTGGGCGATAACGAAGKGGGTTGAAGGCTTTTGGCTCTGGAGTTGTCTGAAATAAGAAAAGTTTATTTATGTCAAAAATACAATCAACTAACCGTAACCTCCTCTTCCTCGTCCTCCTCCTCAACTTCTTCCTCTCCGTCGTTGCTCTCAACAACTTCAGCTACATTCTCATTTGTTTGTTCTTCTCCTTCCAATTGCTCATTCTCATCCTCTTCCTCCTCAACAACTGGTGTAGTTGGTTCTGGAGTGGTCGTCTTGACAACCTTTGGAACAGCTGTGGTAGTGATTGGCTCAAAGTCAACTGGCTTCTCTCCCTTAGCACAAATCATACGGTAAACCCAAACACGGACTCCTCCTCTACAAAATTTCAAAACTAAATACAATTTATCTCATTCGTATAACTCACTGTTCAGTTCTGGCGTTAGCAACAAAATCGTATTCGGCTCCTCCCTTGTCTCCGTAAAGATCCTTCTCGGCAACTTCTCCACCCTCGTAGAAGCTTCCAGCAGACACAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>214 139 134 82 82 82 60 36 30 27 25 24 17 17 15 6 5 3 2</canonical_bands>
                <polymorphic_bands>229 139 134 82 82 82 60 36 30 27 25 24 17 17 6 5 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCATTGGATTGAGTGAATG</pcr_primer_p1>
		<pcr_primer_p2>ACGGTTAGTTGATTGTATTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>ACTCATTGGATTGAGTGAATGGAGGGGAATGAAAAAGGGAAAGATCATCGAAATTGATAGGAAAGAAGAAAAGAAAGAAGTCTAGATAAATGGATAACACGAGTTTAGGACCGACGAACTCCGGTGGATTGTCTTGGGAAGTGTGGTGGGCGATAACGAAGTGGGTTGAAGGCTTTTGGCTCTGGAGTTGTCTGAAATAAGAAAAGTTTATTTATGTCAAAAATACAATCAACTAACCGT</canonical_amplicon>
		<polymorphic_amplicon>ACTCATTGGATTGAGTGAATGGAGGGGAATGAAAAAGGGAAAGATCATCGAAATTGATAGGAAAGAAGAAAAGAAAGAAGTCTAGATAAATGGATAACACGAGTTTAGGACCGACGAACTCCGGTGGATTGTCTTGGGAAGTGTGGTGGGCGATAACGAAGKGGGTTGAAGGCTTTTGGCTCTGGAGTTGTCTGAAATAAGAAAAGTTTATTTATGTCAAAAATACAATCAACTAACCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23025</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>178284</contig_pos>
        <strand>+</strand>
        <context>ACAGTTATTT[C/T]ATTTCTTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGGTCTGGGTTTCTATTCCGTTGGAAACGAAATTTCAACACAGTTATTT</left_flank>
        <right_flank>ATTTCTTTTCCATCATCATGAGCCCATCTTCCCAATCCTATGATAATTGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTTCAGCCGCCAATCGTTCATCTGGAACAACAGAGAGGTTCTCGACAAAAATTAAATCGTTAAAAGTTGATTTCTTGATTATTCTGACAAAAATCTTTAAAATACCTGTTTTTCCCATTTTGGAGTGGCTCGCAGACGGATCATTGTGTGCCCTCTGTTTTTAGTCGCTACTCTCCAATTATTGGGAATATTGGGAGGGTAGCGACTAAAATCGCCGAAGGGCTAAAAAATAAATACTTTTCTATCAGAAAAATCAAAAAATCAACTTTTAACAATATAATTTTTCTTGGAAACCTCTCTGTTATTCCGAACGGACGATTGGCGGCTGAACGGCGGCTGAGGCTACTGACGGGTGAAAGTAGGAAGAGATTGAAAAATGATTTTTTGTCTATTTTGATATTCTTCGTTCTTTCTATGCGTCTTTTTCAATTATATTAATCGTACTTATGAGGTCTGGGTTTCTATTCCGTTGGAAACGAAATTTCAACACAGTTATTTCATTTCTTTTCCATCATCATGAGCCCATCTTCCCAATCCTATGATAATTGAAAAATATTCATTATTATCATTATCATTGAAATTATTAAATGTACAAACTCGTTTTGATAGGGACTCATTGGATTGAGTGAATGGAGGGGAATGAAAAAGGGAAAGATCATCGAAATTGATAGGAAAGAAGAAAAGAAAGAAGTCTAGATAAATGGATAACACGAGTTTAGGACCGACGAACTCCGGTGGATTGTCTTGGGAAGTGTGGTGGGCGATAACGAAGTGGGTTGAAGGCTTTTGGCTCTGGAGTTGTCTGAAATAAGAAAAGTTTATTTATGTCAAAAATACAATCAACTAACCGTAACCTCCTCTTCCTCGTCCTCCTCCTCAACTTCTTCCTCTCCGTCGTTGCTCTCAACAACTTCAGCTACATTCTCATTTGTTTGTTCTTCTCCTTCCAATTGCTCATTCTCATCCTCTTCCTCCTCAACAACTGGTGTAGTTGGTTCT</canonical>
            <polymorphic>CGTTCAGCCGCCAATCGTTCATCTGGAACAACAGAGAGGTTCTCGACAAAAATTAAATCGTTAAAAGTTGATTTCTTGATTATTCTGACAAAAATCTTTAAAATACCTGTTTTTCCCATTTTGGAGTGGCTCGCAGACGGATCATTGTGTGCCCTCTGTTTTTAGTCGCTACTCTCCAATTATTGGGAATATTGGGAGGGTAGCGACTAAAATCGCCGAAGGGCTAAAAAATAAATACTTTTCTATCAGAAAAATCAAAAAATCAACTTTTAACAATATAATTTTTCTTGGAAACCTCTCTGTTATTCCGAACGGACGATTGGCGGCTGAACGGCGGCTGAGGCTACTGACGGGTGAAAGTAGGAAGAGATTGAAAAATGATTTTTTGTCTATTTTGATATTCTTCGTTCTTTCTATGCGTCTTTTTCAATTATATTAATCGTACTTATGAGGTCTGGGTTTCTATTCCGTTGGAAACGAAATTTCAACACAGTTATTTYATTTCTTTTCCATCATCATGAGCCCATCTTCCCAATCCTATGATAATTGAAAAATATTCATTATTATCATTATCATTGAAATTATTAAATGTACAAACTCGTTTTGATAGGGACTCATTGGATTGAGTGAATGGAGGGGAATGAAAAAGGGAAAGATCATCGAAATTGATAGGAAAGAAGAAAAGAAAGAAGTCTAGATAAATGGATAACACGAGTTTAGGACCGACGAACTCCGGTGGATTGTCTTGGGAAGTGTGGTGGGCGATAACGAAGTGGGTTGAAGGCTTTTGGCTCTGGAGTTGTCTGAAATAAGAAAAGTTTATTTATGTCAAAAATACAATCAACTAACCGTAACCTCCTCTTCCTCGTCCTCCTCCTCAACTTCTTCCTCTCCGTCGTTGCTCTCAACAACTTCAGCTACATTCTCATTTGTTTGTTCTTCTCCTTCCAATTGCTCATTCTCATCCTCTTCCTCCTCAACAACTGGTGTAGTTGGTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTATGCGTCTTTTTCAATTAT</pcr_primer_p1>
		<pcr_primer_p2>GATGATCTTTCCCTTTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTATGCGTCTTTTTCAATTATATTAATCGTACTTATGAGGTCTGGGTTTCTATTCCGTTGGAAACGAAATTTCAACACAGTTATTTCATTTCTTTTCCATCATCATGAGCCCATCTTCCCAATCCTATGATAATTGAAAAATATTCATTATTATCATTATCATTGAAATTATTAAATGTACAAACTCGTTTTGATAGGGACTCATTGGATTGAGTGAATGGAGGGGAATGAAAAAGGGAAAGATCATC</canonical_amplicon>
		<polymorphic_amplicon>TTCTATGCGTCTTTTTCAATTATATTAATCGTACTTATGAGGTCTGGGTTTCTATTCCGTTGGAAACGAAATTTCAACACAGTTATTTYATTTCTTTTCCATCATCATGAGCCCATCTTCCCAATCCTATGATAATTGAAAAATATTCATTATTATCATTATCATTGAAATTATTAAATGTACAAACTCGTTTTGATAGGGACTCATTGGATTGAGTGAATGGAGGGGAATGAAAAAGGGAAAGATCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23048</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>182844</contig_pos>
        <strand></strand>
        <context>TYTTAAAAGA[T/A]TACTGTAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCACTTTTCGTTCTTGCAAACTTTTTTTGTTTTTCTTTATTTTTAAAAGA</left_flank>
        <right_flank>TACTGTAATTTTAATATATTTTTATGTCTCTCGTGTTCGTAAATGAAAGA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAACTAGCATATTTCATGAGACCTGTACACATTCATTGATTTTCTGTAAATAAATATGTTCTAATTTTCTGATTTTCAACAAAACACACTGCATGAAGTAAACTATTGGACATCCTGGTCTCCTCTTCGTTTTCAGAGAATTTAGTAAATCTGAAACTCGAGGAAATATTCTAACAATATTCTTTCAGGACAATACATTTGATGGTACGGAAAGCGAAATTTCAAACATAGGTGGAACTTCTCCATCCTATCCAGTTGCATATAAGAATCGGCCACCGAAACCAAAAAGAATGGAGATTCTGGAAGAAGTTCAAGTCGAGGAGTATACTCCGGAACCTTCTCCAGCGCCAAGAAGAATATTCAAGTCTGCAGTTCATCAGTCAGATGCAAGCCTGTCGGCTAAGGGAAATTCGTTGTCAAGATATGAGGAATCTGCTTTTTGATAGTCACTTTTCGTTCTTGCAAACTTTTTTTGTTTTTCTTTATTTTTAAAAGATTACTGTAATTTTAATATATTTTTATGTCTCTCGTGTTCGTAAATGAAAGAATGCTCACACATTTTTGCAGGTCAAAATATTAGTGAAATATATTAAAATTGATTTCAAAACATAGCTTTATGCAAATATTTGGCTCAAAAAACTTCTGAACTCGATTTTATTTGCGGAATGTGCTGATCGCTGTGGGAGATTTTACTTTTTGCTAGTTGCGCCTTTAAAGTGAGCTACGGTTATTGATCGGTGCGGCGTTCATATTTCGCGTTTTTGAACGTTTTTGAATAATTTTCCTGAATTAAAGAGAAAGAGAAAAGCAGCAATCATTTTTTTTCGGTTTTTTTTCATTCTTTTGAGAATTTTTCTTGTGAACAACAAAAAATCGCTATTTTCTTGAACAGTAAAATACTCTTGGAAACAAGTATTTATATATTCTGTCCGCGAACGATTTCTGCCTGGTGACCGCTGGACTAGTTTTCCCTCAGCCGGCCGCCTACTTCTGCTCT</canonical>
            <polymorphic>TTTCAACTAGCATATTTCATGAGACCTGTACACATTCATTGATTTTCTGTAAATAAATATGTTCTAATTTTCTGATTTTCAACAAAACACACTGCATGAAGTAAACTATTGGACATCCTGGTCTCCTCTTCGTTTTCAGAGAATTTAGTAAATCTGAAACTCGAGGAAATATTCTAACAATATTCTTTCAGGACAATACATTTGATGGTACGGAAAGCGAAATTTCAAACATAGGTGGAACTTCTCCATCCTATCCAGTTGCATATAAGAATCGGCCACCGAAACCAAAAAGAATGGAGATTCTGGAAGAAGTTCAAGTCGAGGAGTATACTCCGGAACCTTCTCCAGCGCCAAGAAGAATATTCAAGTCTGCAGTTCATCAGTCAGATGCAAGCCTGTCGGCTAAGGGAAATTCGTTGTCAAGATATGAGGAATCTGCTTTTTGATAGTCACTTTTCGTTCTTGCAAACTTTTTTTGTTTTTCTTTATTTTTAAAAGAWTACTGTAATTTTAATATATTTTTATGTCTCTCGTGTTCGTAAATGAAAGAATGCTCACACATTTTTGCAGGTCAAAATATTAGTGAAATATATTAAAATTGATTTCAAAACATAGCTTTATGCAAATATTTGGCTCAAAAAACTTCTGAACTCGATTTTATTTGCGGAATGTGCTGATCGCTGTGGGAGATTTTACTTTTTGCTAGTTGCGCCTTTAAAGTGAGCTACGGTTATTGATCGGTGCGGCGTTCATATTTCGCGTTTTTGAACGTTTTTGAATAATTTTCCTGAATTAAAGAGAAAGAGAAAAGCAGCAATCATTTTTTTTCGGTTTTTTTTCATTCTTTTGAGAATTTTTCTTGTGAACAACAAAAAATCGCTATTTTCTTGAACAGTAAAATACTCTTGGAAACAAGTATTTATATATTCTGTCCGCGAACGATTTCTGCCTGGTGACCGCTGGACTAGTTTTCCCTCAGCCGGCCGCCTACTTCTGCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGTCAAGATATGAGGAATCTG</pcr_primer_p1>
		<pcr_primer_p2>AAATAAAATCGAGTTCAGAAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTGTCAAGATATGAGGAATCTGCTTTTTGATAGTCACTTTTCGTTCTTGCAAACTTTTTTTGTTTTTCTTTATTTTTAAAAGATTACTGTAATTTTAATATATTTTTATGTCTCTCGTGTTCGTAAATGAAAGAATGCTCACACATTTTTGCAGGTCAAAATATTAGTGAAATATATTAAAATTGATTTCAAAACATAGCTTTATGCAAATATTTGGCTCAAAAAACTTCTGAACTCGATTTTATTT</canonical_amplicon>
		<polymorphic_amplicon>GTTGTCAAGATATGAGGAATCTGCTTTTTGATAGTCACTTTTCGTTCTTGCAAACTTTTTTTGTTTTTCTTTATTTTTAAAAGAWTACTGTAATTTTAATATATTTTTATGTCTCTCGTGTTCGTAAATGAAAGAATGCTCACACATTTTTGCAGGTCAAAATATTAGTGAAATATATTAAAATTGATTTCAAAACATAGCTTTATGCAAATATTTGGCTCAAAAAACTTCTGAACTCGATTTTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23049</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>182835</contig_pos>
        <strand></strand>
        <context>TTTCTTTATT[T/C]TTAAAAGAWT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTGATAGTCACTTTTCGTTCTTGCAAACTTTTTTTGTTTTTCTTTATT</left_flank>
        <right_flank>TTAAAAGATTACTGTAATTTTAATATATTTTTATGTCTCTCGTGTTCGTA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTAAACATTTCAACTAGCATATTTCATGAGACCTGTACACATTCATTGATTTTCTGTAAATAAATATGTTCTAATTTTCTGATTTTCAACAAAACACACTGCATGAAGTAAACTATTGGACATCCTGGTCTCCTCTTCGTTTTCAGAGAATTTAGTAAATCTGAAACTCGAGGAAATATTCTAACAATATTCTTTCAGGACAATACATTTGATGGTACGGAAAGCGAAATTTCAAACATAGGTGGAACTTCTCCATCCTATCCAGTTGCATATAAGAATCGGCCACCGAAACCAAAAAGAATGGAGATTCTGGAAGAAGTTCAAGTCGAGGAGTATACTCCGGAACCTTCTCCAGCGCCAAGAAGAATATTCAAGTCTGCAGTTCATCAGTCAGATGCAAGCCTGTCGGCTAAGGGAAATTCGTTGTCAAGATATGAGGAATCTGCTTTTTGATAGTCACTTTTCGTTCTTGCAAACTTTTTTTGTTTTTCTTTATTTTTAAAAGATTACTGTAATTTTAATATATTTTTATGTCTCTCGTGTTCGTAAATGAAAGAATGCTCACACATTTTTGCAGGTCAAAATATTAGTGAAATATATTAAAATTGATTTCAAAACATAGCTTTATGCAAATATTTGGCTCAAAAAACTTCTGAACTCGATTTTATTTGCGGAATGTGCTGATCGCTGTGGGAGATTTTACTTTTTGCTAGTTGCGCCTTTAAAGTGAGCTACGGTTATTGATCGGTGCGGCGTTCATATTTCGCGTTTTTGAACGTTTTTGAATAATTTTCCTGAATTAAAGAGAAAGAGAAAAGCAGCAATCATTTTTTTTCGGTTTTTTTTCATTCTTTTGAGAATTTTTCTTGTGAACAACAAAAAATCGCTATTTTCTTGAACAGTAAAATACTCTTGGAAACAAGTATTTATATATTCTGTCCGCGAACGATTTCTGCCTGGTGACCGCTGGACTAGTTTTCCCTCAGCCGGCCGCCTAC</canonical>
            <polymorphic>AACTAAACATTTCAACTAGCATATTTCATGAGACCTGTACACATTCATTGATTTTCTGTAAATAAATATGTTCTAATTTTCTGATTTTCAACAAAACACACTGCATGAAGTAAACTATTGGACATCCTGGTCTCCTCTTCGTTTTCAGAGAATTTAGTAAATCTGAAACTCGAGGAAATATTCTAACAATATTCTTTCAGGACAATACATTTGATGGTACGGAAAGCGAAATTTCAAACATAGGTGGAACTTCTCCATCCTATCCAGTTGCATATAAGAATCGGCCACCGAAACCAAAAAGAATGGAGATTCTGGAAGAAGTTCAAGTCGAGGAGTATACTCCGGAACCTTCTCCAGCGCCAAGAAGAATATTCAAGTCTGCAGTTCATCAGTCAGATGCAAGCCTGTCGGCTAAGGGAAATTCGTTGTCAAGATATGAGGAATCTGCTTTTTGATAGTCACTTTTCGTTCTTGCAAACTTTTTTTGTTTTTCTTTATTYTTAAAAGATTACTGTAATTTTAATATATTTTTATGTCTCTCGTGTTCGTAAATGAAAGAATGCTCACACATTTTTGCAGGTCAAAATATTAGTGAAATATATTAAAATTGATTTCAAAACATAGCTTTATGCAAATATTTGGCTCAAAAAACTTCTGAACTCGATTTTATTTGCGGAATGTGCTGATCGCTGTGGGAGATTTTACTTTTTGCTAGTTGCGCCTTTAAAGTGAGCTACGGTTATTGATCGGTGCGGCGTTCATATTTCGCGTTTTTGAACGTTTTTGAATAATTTTCCTGAATTAAAGAGAAAGAGAAAAGCAGCAATCATTTTTTTTCGGTTTTTTTTCATTCTTTTGAGAATTTTTCTTGTGAACAACAAAAAATCGCTATTTTCTTGAACAGTAAAATACTCTTGGAAACAAGTATTTATATATTCTGTCCGCGAACGATTTCTGCCTGGTGACCGCTGGACTAGTTTTCCCTCAGCCGGCCGCCTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 275 223</canonical_bands>
                <polymorphic_bands>725 275</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGTCAAGATATGAGGAATCTG</pcr_primer_p1>
		<pcr_primer_p2>AAATAAAATCGAGTTCAGAAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTGTCAAGATATGAGGAATCTGCTTTTTGATAGTCACTTTTCGTTCTTGCAAACTTTTTTTGTTTTTCTTTATTTTTAAAAGATTACTGTAATTTTAATATATTTTTATGTCTCTCGTGTTCGTAAATGAAAGAATGCTCACACATTTTTGCAGGTCAAAATATTAGTGAAATATATTAAAATTGATTTCAAAACATAGCTTTATGCAAATATTTGGCTCAAAAAACTTCTGAACTCGATTTTATTT</canonical_amplicon>
		<polymorphic_amplicon>GTTGTCAAGATATGAGGAATCTGCTTTTTGATAGTCACTTTTCGTTCTTGCAAACTTTTTTTGTTTTTCTTTATTYTTAAAAGATTACTGTAATTTTAATATATTTTTATGTCTCTCGTGTTCGTAAATGAAAGAATGCTCACACATTTTTGCAGGTCAAAATATTAGTGAAATATATTAAAATTGATTTCAAAACATAGCTTTATGCAAATATTTGGCTCAAAAAACTTCTGAACTCGATTTTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23050</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>188687</contig_pos>
        <strand>+</strand>
        <context>CTTTTCTGTC[A/T]GAAATWTGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATATTCATGCACCCAAGTAATAGTTCAGAAGGAATATTGGCTTTTCTGTC</left_flank>
        <right_flank>GAAATATGACTTGCCAACGATTTCAAATCTATCCGGTTTATCTGACAACT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTAAACAGATCGTCTGAAAACGCACGAAAATCGAATAATAAATTCGGGAAACAAAAATATTTTCCGGTTACGGTAGTTATGGTTGTGGGACCTTCGGCCACGAGTTTCTTGTCTGTAAAACCTTTATCAGAAAGGCCCTTCAATTAGAGGGAGCTCTTCTATTTTTTCCAGAAAATGTTGATAGAAAATCGTTCAAAATTCATAAAAATCCATCAATTTTTACCGAAATTGAGCGGATTTTTTAGCAAAAAAAAAGAGTTTTTGAACAAATTTCTGTGGACGCTTGGATTTTTCAGAATATTTTTCACTGAAAAGGTACAAAAAATTTCAATTTCAACCAACACATTTTGAAGGAGGCCCTTCTATCTTTCCAAGCCCCTCTCGGAGGACCCTTCTATTAGAGGAACTCTCCATTCAGAGGGGCTCTTCTAATACAGGTTTTATGGTATATTCATGCACCCAAGTAATAGTTCAGAAGGAATATTGGCTTTTCTGTCAGAAATATGACTTGCCAACGATTTCAAATCTATCCGGTTTATCTGACAACTTATGTGAGAACCTAAACCAAGTTGACCTATCCAAAATCATTTGAACTTTTACCTTCCCTCTCATCATTCCACTCCTCCCTCACACTTTCAATTCCACACTCATTGCCAGGTGTATACGGATCTCGGGTATCCTTTTATTCACTCTCTTCCCAGGTTTGAATCGGTTATCGCCTCTTCTCCTGGGCGCCCAGCGCCACCACCGACTTTTGCCTGTATTTTTTGAGAGAGACACAGATATAGAGGCGGGACTTGACGACGCAGTTATCCAGTTCTTCGGCGACGACTACAAAAGGCGCGGAAGGGAAACGAGCAGAAGATCCGATCGGCCTCATACAAGCAGATATGGACGTCAAAGAGACAGAAGAGCAACGGCAAATGCGACGCATCGCTTTTGTTGCCGTCGTCGTTTCGACTGCCGCAGTTATCGCTTCAGTTGTGACACTTCCAATG</canonical>
            <polymorphic>GTCTAAACAGATCGTCTGAAAACGCACGAAAATCGAATAATAAATTCGGGAAACAAAAATATTTTCCGGTTACGGTAGTTATGGTTGTGGGACCTTCGGCCACGAGTTTCTTGTCTGTAAAACCTTTATCAGAAAGGCCCTTCAATTAGAGGGAGCTCTTCTATTTTTTCCAGAAAATGTTGATAGAAAATCGTTCAAAATTCATAAAAATCCATCAATTTTTACCGAAATTGAGCGGATTTTTTAGCAAAAAAAAAGAGTTTTTGAACAAATTTCTGTGGACGCTTGGATTTTTCAGAATATTTTTCACTGAAAAGGTACAAAAAATTTCAATTTCAACCAACACATTTTGAAGGAGGCCCTTCTATCTTTCCAAGCCCCTCTCGGAGGACCCTTCTATTAGAGGAACTCTCCATTCAGAGGGGCTCTTCTAATACAGGTTTTATGGTATATTCATGCACCCAAGTAATAGTTCAGAAGGAATATTGGCTTTTCTGTCWGAAATATGACTTGCCAACGATTTCAAATCTATCCGGTTTATCTGACAACTTATGTGAGAACCTAAACCAAGTTGACCTATCCAAAATCATTTGAACTTTTACCTTCCCTCTCATCATTCCACTCCTCCCTCACACTTTCAATTCCACACTCATTGCCAGGTGTATACGGATCTCGGGTATCCTTTTATTCACTCTCTTCCCAGGTTTGAATCGGTTATCGCCTCTTCTCCTGGGCGCCCAGCGCCACCACCGACTTTTGCCTGTATTTTTTGAGAGAGACACAGATATAGAGGCGGGACTTGACGACGCAGTTATCCAGTTCTTCGGCGACGACTACAAAAGGCGCGGAAGGGAAACGAGCAGAAGATCCGATCGGCCTCATACAAGCAGATATGGACGTCAAAGAGACAGAAGAGCAACGGCAAATGCGACGCATCGCTTTTGTTGCCGTCGTCGTTTCGACTGCCGCAGTTATCGCTTCAGTTGTGACACTTCCAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATATTCATGCACCCAAGTAAT</pcr_primer_p1>
		<pcr_primer_p2>GAAGAGAGTGAATAAAAGGATACC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GTATATTCATGCACCCAAGTAATAGTTCAGAAGGAATATTGGCTTTTCTGTCAGAAATATGACTTGCCAACGATTTCAAATCTATCCGGTTTATCTGACAACTTATGTGAGAACCTAAACCAAGTTGACCTATCCAAAATCATTTGAACTTTTACCTTCCCTCTCATCATTCCACTCCTCCCTCACACTTTCAATTCCACACTCATTGCCAGGTGTATACGGATCTCGGGTATCCTTTTATTCACTCTCTTC</canonical_amplicon>
		<polymorphic_amplicon>GTATATTCATGCACCCAAGTAATAGTTCAGAAGGAATATTGGCTTTTCTGTCWGAAATATGACTTGCCAACGATTTCAAATCTATCCGGTTTATCTGACAACTTATGTGAGAACCTAAACCAAGTTGACCTATCCAAAATCATTTGAACTTTTACCTTCCCTCTCATCATTCCACTCCTCCCTCACACTTTCAATTCCACACTCATTGCCAGGTGTATACGGATCTCGGGTATCCTTTTATTCACTCTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23051</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>188693</contig_pos>
        <strand>+</strand>
        <context>TGTCWGAAAT[A/T]TGACTWGCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGCACCCAAGTAATAGTTCAGAAGGAATATTGGCTTTTCTGTCAGAAAT</left_flank>
        <right_flank>TGACTTGCCAACGATTTCAAATCTATCCGGTTTATCTGACAACTTATGTG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGATCGTCTGAAAACGCACGAAAATCGAATAATAAATTCGGGAAACAAAAATATTTTCCGGTTACGGTAGTTATGGTTGTGGGACCTTCGGCCACGAGTTTCTTGTCTGTAAAACCTTTATCAGAAAGGCCCTTCAATTAGAGGGAGCTCTTCTATTTTTTCCAGAAAATGTTGATAGAAAATCGTTCAAAATTCATAAAAATCCATCAATTTTTACCGAAATTGAGCGGATTTTTTAGCAAAAAAAAAGAGTTTTTGAACAAATTTCTGTGGACGCTTGGATTTTTCAGAATATTTTTCACTGAAAAGGTACAAAAAATTTCAATTTCAACCAACACATTTTGAAGGAGGCCCTTCTATCTTTCCAAGCCCCTCTCGGAGGACCCTTCTATTAGAGGAACTCTCCATTCAGAGGGGCTCTTCTAATACAGGTTTTATGGTATATTCATGCACCCAAGTAATAGTTCAGAAGGAATATTGGCTTTTCTGTCAGAAATATGACTTGCCAACGATTTCAAATCTATCCGGTTTATCTGACAACTTATGTGAGAACCTAAACCAAGTTGACCTATCCAAAATCATTTGAACTTTTACCTTCCCTCTCATCATTCCACTCCTCCCTCACACTTTCAATTCCACACTCATTGCCAGGTGTATACGGATCTCGGGTATCCTTTTATTCACTCTCTTCCCAGGTTTGAATCGGTTATCGCCTCTTCTCCTGGGCGCCCAGCGCCACCACCGACTTTTGCCTGTATTTTTTGAGAGAGACACAGATATAGAGGCGGGACTTGACGACGCAGTTATCCAGTTCTTCGGCGACGACTACAAAAGGCGCGGAAGGGAAACGAGCAGAAGATCCGATCGGCCTCATACAAGCAGATATGGACGTCAAAGAGACAGAAGAGCAACGGCAAATGCGACGCATCGCTTTTGTTGCCGTCGTCGTTTCGACTGCCGCAGTTATCGCTTCAGTTGTGACACTTCCAATGCTTTAC</canonical>
            <polymorphic>ACAGATCGTCTGAAAACGCACGAAAATCGAATAATAAATTCGGGAAACAAAAATATTTTCCGGTTACGGTAGTTATGGTTGTGGGACCTTCGGCCACGAGTTTCTTGTCTGTAAAACCTTTATCAGAAAGGCCCTTCAATTAGAGGGAGCTCTTCTATTTTTTCCAGAAAATGTTGATAGAAAATCGTTCAAAATTCATAAAAATCCATCAATTTTTACCGAAATTGAGCGGATTTTTTAGCAAAAAAAAAGAGTTTTTGAACAAATTTCTGTGGACGCTTGGATTTTTCAGAATATTTTTCACTGAAAAGGTACAAAAAATTTCAATTTCAACCAACACATTTTGAAGGAGGCCCTTCTATCTTTCCAAGCCCCTCTCGGAGGACCCTTCTATTAGAGGAACTCTCCATTCAGAGGGGCTCTTCTAATACAGGTTTTATGGTATATTCATGCACCCAAGTAATAGTTCAGAAGGAATATTGGCTTTTCTGTCAGAAATWTGACTTGCCAACGATTTCAAATCTATCCGGTTTATCTGACAACTTATGTGAGAACCTAAACCAAGTTGACCTATCCAAAATCATTTGAACTTTTACCTTCCCTCTCATCATTCCACTCCTCCCTCACACTTTCAATTCCACACTCATTGCCAGGTGTATACGGATCTCGGGTATCCTTTTATTCACTCTCTTCCCAGGTTTGAATCGGTTATCGCCTCTTCTCCTGGGCGCCCAGCGCCACCACCGACTTTTGCCTGTATTTTTTGAGAGAGACACAGATATAGAGGCGGGACTTGACGACGCAGTTATCCAGTTCTTCGGCGACGACTACAAAAGGCGCGGAAGGGAAACGAGCAGAAGATCCGATCGGCCTCATACAAGCAGATATGGACGTCAAAGAGACAGAAGAGCAACGGCAAATGCGACGCATCGCTTTTGTTGCCGTCGTCGTTTCGACTGCCGCAGTTATCGCTTCAGTTGTGACACTTCCAATGCTTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTCATGCACCCAAGTAATAG</pcr_primer_p1>
		<pcr_primer_p2>GAAGAGAGTGAATAAAAGGATACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATTCATGCACCCAAGTAATAGTTCAGAAGGAATATTGGCTTTTCTGTCAGAAATATGACTTGCCAACGATTTCAAATCTATCCGGTTTATCTGACAACTTATGTGAGAACCTAAACCAAGTTGACCTATCCAAAATCATTTGAACTTTTACCTTCCCTCTCATCATTCCACTCCTCCCTCACACTTTCAATTCCACACTCATTGCCAGGTGTATACGGATCTCGGGTATCCTTTTATTCACTCTCTTC</canonical_amplicon>
		<polymorphic_amplicon>ATATTCATGCACCCAAGTAATAGTTCAGAAGGAATATTGGCTTTTCTGTCAGAAATWTGACTTGCCAACGATTTCAAATCTATCCGGTTTATCTGACAACTTATGTGAGAACCTAAACCAAGTTGACCTATCCAAAATCATTTGAACTTTTACCTTCCCTCTCATCATTCCACTCCTCCCTCACACTTTCAATTCCACACTCATTGCCAGGTGTATACGGATCTCGGGTATCCTTTTATTCACTCTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23052</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>188699</contig_pos>
        <strand>+</strand>
        <context>AAATWTGACT[A/T]GCCAACGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCAAGTAATAGTTCAGAAGGAATATTGGCTTTTCTGTCAGAAATATGACT</left_flank>
        <right_flank>GCCAACGATTTCAAATCTATCCGGTTTATCTGACAACTTATGTGAGAACC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTCTGAAAACGCACGAAAATCGAATAATAAATTCGGGAAACAAAAATATTTTCCGGTTACGGTAGTTATGGTTGTGGGACCTTCGGCCACGAGTTTCTTGTCTGTAAAACCTTTATCAGAAAGGCCCTTCAATTAGAGGGAGCTCTTCTATTTTTTCCAGAAAATGTTGATAGAAAATCGTTCAAAATTCATAAAAATCCATCAATTTTTACCGAAATTGAGCGGATTTTTTAGCAAAAAAAAAGAGTTTTTGAACAAATTTCTGTGGACGCTTGGATTTTTCAGAATATTTTTCACTGAAAAGGTACAAAAAATTTCAATTTCAACCAACACATTTTGAAGGAGGCCCTTCTATCTTTCCAAGCCCCTCTCGGAGGACCCTTCTATTAGAGGAACTCTCCATTCAGAGGGGCTCTTCTAATACAGGTTTTATGGTATATTCATGCACCCAAGTAATAGTTCAGAAGGAATATTGGCTTTTCTGTCAGAAATATGACTTGCCAACGATTTCAAATCTATCCGGTTTATCTGACAACTTATGTGAGAACCTAAACCAAGTTGACCTATCCAAAATCATTTGAACTTTTACCTTCCCTCTCATCATTCCACTCCTCCCTCACACTTTCAATTCCACACTCATTGCCAGGTGTATACGGATCTCGGGTATCCTTTTATTCACTCTCTTCCCAGGTTTGAATCGGTTATCGCCTCTTCTCCTGGGCGCCCAGCGCCACCACCGACTTTTGCCTGTATTTTTTGAGAGAGACACAGATATAGAGGCGGGACTTGACGACGCAGTTATCCAGTTCTTCGGCGACGACTACAAAAGGCGCGGAAGGGAAACGAGCAGAAGATCCGATCGGCCTCATACAAGCAGATATGGACGTCAAAGAGACAGAAGAGCAACGGCAAATGCGACGCATCGCTTTTGTTGCCGTCGTCGTTTCGACTGCCGCAGTTATCGCTTCAGTTGTGACACTTCCAATGCTTTACAATTAT</canonical>
            <polymorphic>CGTCTGAAAACGCACGAAAATCGAATAATAAATTCGGGAAACAAAAATATTTTCCGGTTACGGTAGTTATGGTTGTGGGACCTTCGGCCACGAGTTTCTTGTCTGTAAAACCTTTATCAGAAAGGCCCTTCAATTAGAGGGAGCTCTTCTATTTTTTCCAGAAAATGTTGATAGAAAATCGTTCAAAATTCATAAAAATCCATCAATTTTTACCGAAATTGAGCGGATTTTTTAGCAAAAAAAAAGAGTTTTTGAACAAATTTCTGTGGACGCTTGGATTTTTCAGAATATTTTTCACTGAAAAGGTACAAAAAATTTCAATTTCAACCAACACATTTTGAAGGAGGCCCTTCTATCTTTCCAAGCCCCTCTCGGAGGACCCTTCTATTAGAGGAACTCTCCATTCAGAGGGGCTCTTCTAATACAGGTTTTATGGTATATTCATGCACCCAAGTAATAGTTCAGAAGGAATATTGGCTTTTCTGTCAGAAATATGACTWGCCAACGATTTCAAATCTATCCGGTTTATCTGACAACTTATGTGAGAACCTAAACCAAGTTGACCTATCCAAAATCATTTGAACTTTTACCTTCCCTCTCATCATTCCACTCCTCCCTCACACTTTCAATTCCACACTCATTGCCAGGTGTATACGGATCTCGGGTATCCTTTTATTCACTCTCTTCCCAGGTTTGAATCGGTTATCGCCTCTTCTCCTGGGCGCCCAGCGCCACCACCGACTTTTGCCTGTATTTTTTGAGAGAGACACAGATATAGAGGCGGGACTTGACGACGCAGTTATCCAGTTCTTCGGCGACGACTACAAAAGGCGCGGAAGGGAAACGAGCAGAAGATCCGATCGGCCTCATACAAGCAGATATGGACGTCAAAGAGACAGAAGAGCAACGGCAAATGCGACGCATCGCTTTTGTTGCCGTCGTCGTTTCGACTGCCGCAGTTATCGCTTCAGTTGTGACACTTCCAATGCTTTACAATTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTCATGCACCCAAGTAATAG</pcr_primer_p1>
		<pcr_primer_p2>GAAGAGAGTGAATAAAAGGATACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATTCATGCACCCAAGTAATAGTTCAGAAGGAATATTGGCTTTTCTGTCAGAAATATGACTTGCCAACGATTTCAAATCTATCCGGTTTATCTGACAACTTATGTGAGAACCTAAACCAAGTTGACCTATCCAAAATCATTTGAACTTTTACCTTCCCTCTCATCATTCCACTCCTCCCTCACACTTTCAATTCCACACTCATTGCCAGGTGTATACGGATCTCGGGTATCCTTTTATTCACTCTCTTC</canonical_amplicon>
		<polymorphic_amplicon>ATATTCATGCACCCAAGTAATAGTTCAGAAGGAATATTGGCTTTTCTGTCAGAAATATGACTWGCCAACGATTTCAAATCTATCCGGTTTATCTGACAACTTATGTGAGAACCTAAACCAAGTTGACCTATCCAAAATCATTTGAACTTTTACCTTCCCTCTCATCATTCCACTCCTCCCTCACACTTTCAATTCCACACTCATTGCCAGGTGTATACGGATCTCGGGTATCCTTTTATTCACTCTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23053</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>190363</contig_pos>
        <strand>+</strand>
        <context>CGTATCCGGG[C/T]AAAGCAAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAAAGCTGGACGACACATTTCGGATAAAGGAATGTGCGCGTATCCGGG</left_flank>
        <right_flank>AAAGCAAGAAGCAGCAGCAGCAAAAATCGAAATCCAGCTGTTGCTACCAA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACGGAATGAAGGGAGCGCCAGGAGCCGCTGGACGCCTCATTCCGGTGCCGGGACCACAAGGACCACCAGGAAAGCCAGGACCAATCGGACCTCCAGGACCGAAAGGAAACCCAGGACCAGACGGACAATCCTACCAAGGACCACCAGGACCACCTGGAGATTCCGGAACTCCAGGACACGAGGGTCGTCCAGGACCAAACGGACCAGCTGGACCACCAGGAGACAACGGAGAGAAGGGAGACTGCGGACATTGCCCACGTAAGATATACCATTTTTTGGTTTCCGAAATCACAACCTATTATTTTCAGCACCACGTACCCCACCAGGCTATTAATCGCCATCCAAGTCATGATCAATTTCGCCCGTTTCGGGTGTCTTTTTTTCGTATCAAAAATAAACTTTTTCGCAATAATGTCTTCTCTTGGTTTCTTATTGTCTTTTTGTGTCTAAAAAGCTGGACGACACATTTCGGATAAAGGAATGTGCGCGTATCCGGGCAAAGCAAGAAGCAGCAGCAGCAAAAATCGAAATCCAGCTGTTGCTACCAAGTTTTCTTTTTCCTCCTCACTTTTTTTCCTCGTCTTCTTCTTCTTCGTGCCTCCTTATCTTCTCATCGAACACGGATAATCAGTTTTGGAATAAGGCGCCGCGGCGCAAGTCGTTAAAGGAGGAAGTTGGGAAGAAGATATGGGGAAAAAGAAGAGACAAAAAACTCGACAACGGGAAAGAAGAGACAATGGAACGTAAATGAGTATCTTGATGTAGTCCGGGAACCACCGCAAATGAGGTGCGGACGACAATGATAAAAGAATGCAGAAGAACGGAAGAAGAAGGAGAAGCTGAAGCAAATGGATTGGGGAAGAAATACTACAGTAGGAACCTTCAATTTATATAAAGATAAAGAGAAAGAAACGAGGGGGGGGGGGAGATGGGATAGCATTACATATGTAATGTAGGGAATAAAGCTGATTTCATTGCCGCAGATCCTACGAGAGAAG</canonical>
            <polymorphic>CGACGGAATGAAGGGAGCGCCAGGAGCCGCTGGACGCCTCATTCCGGTGCCGGGACCACAAGGACCACCAGGAAAGCCAGGACCAATCGGACCTCCAGGACCGAAAGGAAACCCAGGACCAGACGGACAATCCTACCAAGGACCACCAGGACCACCTGGAGATTCCGGAACTCCAGGACACGAGGGTCGTCCAGGACCAAACGGACCAGCTGGACCACCAGGAGACAACGGAGAGAAGGGAGACTGCGGACATTGCCCACGTAAGATATACCATTTTTTGGTTTCCGAAATCACAACCTATTATTTTCAGCACCACGTACCCCACCAGGCTATTAATCGCCATCCAAGTCATGATCAATTTCGCCCGTTTCGGGTGTCTTTTTTTCGTATCAAAAATAAACTTTTTCGCAATAATGTCTTCTCTTGGTTTCTTATTGTCTTTTTGTGTCTAAAAAGCTGGACGACACATTTCGGATAAAGGAATGTGCGCGTATCCGGGYAAAGCAAGAAGCAGCAGCAGCAAAAATCGAAATCCAGCTGTTGCTACCAAGTTTTCTTTTTCCTCCTCACTTTTTTTCCTCGTCTTCTTCTTCTTCGTGCCTCCTTATCTTCTCATCGAACACGGATAATCAGTTTTGGAATAAGGCGCCGCGGCGCAAGTCGTTAAAGGAGGAAGTTGGGAAGAAGATATGGGGAAAAAGAAGAGACAAAAAACTCGACAACGGGAAAGAAGAGACAATGGAACGTAAATGAGTATCTTGATGTAGTCCGGGAACCACCGCAAATGAGGTGCGGACGACAATGATAAAAGAATGCAGAAGAACGGAAGAAGAAGGAGAAGCTGAAGCAAATGGATTGGGGAAGAAATACTACAGTAGGAACCTTCAATTTATATAAAGATAAAGAGAAAGAAACGAGGGGGGGGGGGAGATGGGATAGCATTACATATGTAATGTAGGGAATAAAGCTGATTTCATTGCCGCAGATCCTACGAGAGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTTTCGCAATAATGTCTTC</pcr_primer_p1>
		<pcr_primer_p2>CCTTATTCCAAAACTGATTATCC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTTTTTCGCAATAATGTCTTCTCTTGGTTTCTTATTGTCTTTTTGTGTCTAAAAAGCTGGACGACACATTTCGGATAAAGGAATGTGCGCGTATCCGGGCAAAGCAAGAAGCAGCAGCAGCAAAAATCGAAATCCAGCTGTTGCTACCAAGTTTTCTTTTTCCTCCTCACTTTTTTTCCTCGTCTTCTTCTTCTTCGTGCCTCCTTATCTTCTCATCGAACACGGATAATCAGTTTTGGAATAAGG</canonical_amplicon>
		<polymorphic_amplicon>ACTTTTTCGCAATAATGTCTTCTCTTGGTTTCTTATTGTCTTTTTGTGTCTAAAAAGCTGGACGACACATTTCGGATAAAGGAATGTGCGCGTATCCGGGYAAAGCAAGAAGCAGCAGCAGCAAAAATCGAAATCCAGCTGTTGCTACCAAGTTTTCTTTTTCCTCCTCACTTTTTTTCCTCGTCTTCTTCTTCTTCGTGCCTCCTTATCTTCTCATCGAACACGGATAATCAGTTTTGGAATAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23117</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>399658</contig_pos>
        <strand>+</strand>
        <context>GGTCACCATG[A/T]TTTCGATTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATCCAAACAGGACGAAGATTTCCTAGTCCATTGCCACTCGGTCACCATG</left_flank>
        <right_flank>TTTCGATTTCGAATCAATCCTCATCTTCGGTATTTTCGTCTGTTCCTTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGTTGAAGTTCAATAGCATCATAGGTGTCGTCGATATTTATAGCTTCTTTTGAACAAGAAACCTTGAAAAGGAAGATGACGATAGACTATAGACGGTCAACGAAACCGAAAAGTTGACCCCTTGAATATGAAAAATACCGTAAAACCTGTAATAGAAGGGCCCCTAAACTATTAACTTCGAGCCAATTTTTCTCGCTTCCTGTCAAAGATATAAAAAAGTTATCGACTGATAAATTGATCATCACAATATCACAAACATTTTATCAGACGATTCTTTTTTGATAACTCTCATAGGAGCCAAGAAAAATTGGCTCAAAGACAGCGTGGGAGCTCCTATTGAAAAATCATTAAACAGTTCCTATTTTGTGTAGCTATTTTAATATCCAGTCGTTGAAATTACTTTCCTGAACTTTTAGAAGTTTTAAATGAATTCTGAAGCTCAGAATTTATCCAAACAGGACGAAGATTTCCTAGTCCATTGCCACTCGGTCACCATGATTTCGATTTCGAATCAATCCTCATCTTCGGTATTTTCGTCTGTTCCTTCTGAATTTTAATGATATTTCGCTGTATTCAGTGCCATGGTTTTTTCTCGAAAAATCGACAAATAAGAGTAATGACTTAGAAAGCATGGTGGCTGTGTGGCCATGGACTGGGAAATCCTCTTCCCTCCCGCACGATTAGAGAAATTTTCTTGACAGCAAAACTGTGCCACATCCGGCCGCAGCATTTTGGATAGTGGTCTAGCGGTCATACCAGTTTCTGGATCGCTGAACTTATTTCAAAACAAGAATTTTTTAAAAACGGACTGATTAGTCTCCGGCAACCTACTCATGGTCTGAGTCACGGTCGCGATTTGCATAGACTAATTTCCACATTTGCCTCATCCAAAATAGACTACAGTCGCCATCATTATGTTATCATTTTAGTATGATACCGTAATCATCAAAGGGTGTGACTCAGTGGTCAGTGATCAATGATGTAGGAAATCTTTTAAA</canonical>
            <polymorphic>GAGGTTGAAGTTCAATAGCATCATAGGTGTCGTCGATATTTATAGCTTCTTTTGAACAAGAAACCTTGAAAAGGAAGATGACGATAGACTATAGACGGTCAACGAAACCGAAAAGTTGACCCCTTGAATATGAAAAATACCGTAAAACCTGTAATAGAAGGGCCCCTAAACTATTAACTTCGAGCCAATTTTTCTCGCTTCCTGTCAAAGATATAAAAAAGTTATCGACTGATAAATTGATCATCACAATATCACAAACATTTTATCAGACGATTCTTTTTTGATAACTCTCATAGGAGCCAAGAAAAATTGGCTCAAAGACAGCGTGGGAGCTCCTATTGAAAAATCATTAAACAGTTCCTATTTTGTGTAGCTATTTTAATATCCAGTCGTTGAAATTACTTTCCTGAACTTTTAGAAGTTTTAAATGAATTCTGAAGCTCAGAATTTATCCAAACAGGACGAAGATTTCCTAGTCCATTGCCACTCGGTCACCATGWTTTCGATTTCGAATCAATCCTCATCTTCGGTATTTTCGTCTGTTCCTTCTGAATTTTAATGATATTTCGCTGTATTCAGTGCCATGGTTTTTTCTCGAAAAATCGACAAATAAGAGTAATGACTTAGAAAGCATGGTGGCTGTGTGGCCATGGACTGGGAAATCCTCTTCCCTCCCGCACGATTAGAGAAATTTTCTTGACAGCAAAACTGTGCCACATCCGGCCGCAGCATTTTGGATAGTGGTCTAGCGGTCATACCAGTTTCTGGATCGCTGAACTTATTTCAAAACAAGAATTTTTTAAAAACGGACTGATTAGTCTCCGGCAACCTACTCATGGTCTGAGTCACGGTCGCGATTTGCATAGACTAATTTCCACATTTGCCTCATCCAAAATAGACTACAGTCGCCATCATTATGTTATCATTTTAGTATGATACCGTAATCATCAAAGGGTGTGACTCAGTGGTCAGTGATCAATGATGTAGGAAATCTTTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTAATATCCAGTCGTTGAAA</pcr_primer_p1>
		<pcr_primer_p2>GTCATTACTCTTATTTGTCGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTTTAATATCCAGTCGTTGAAATTACTTTCCTGAACTTTTAGAAGTTTTAAATGAATTCTGAAGCTCAGAATTTATCCAAACAGGACGAAGATTTCCTAGTCCATTGCCACTCGGTCACCATGATTTCGATTTCGAATCAATCCTCATCTTCGGTATTTTCGTCTGTTCCTTCTGAATTTTAATGATATTTCGCTGTATTCAGTGCCATGGTTTTTTCTCGAAAAATCGACAAATAAGAGTAATGAC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTAATATCCAGTCGTTGAAATTACTTTCCTGAACTTTTAGAAGTTTTAAATGAATTCTGAAGCTCAGAATTTATCCAAACAGGACGAAGATTTCCTAGTCCATTGCCACTCGGTCACCATGWTTTCGATTTCGAATCAATCCTCATCTTCGGTATTTTCGTCTGTTCCTTCTGAATTTTAATGATATTTCGCTGTATTCAGTGCCATGGTTTTTTCTCGAAAAATCGACAAATAAGAGTAATGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23118</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>399866</contig_pos>
        <strand>+</strand>
        <context>TGACAGCAAA[A/G]CTGTGCCACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAAATCCTCTTCCCTCCCGCACGATTAGAGAAATTTTCTTGACAGCAAA</left_flank>
        <right_flank>CTGTGCCACATCCGGCCGCAGCATTTTGGATAGTGGTCTAGCGGTCATAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATATAAAAAAGTTATCGACTGATAAATTGATCATCACAATATCACAAACATTTTATCAGACGATTCTTTTTTGATAACTCTCATAGGAGCCAAGAAAAATTGGCTCAAAGACAGCGTGGGAGCTCCTATTGAAAAATCATTAAACAGTTCCTATTTTGTGTAGCTATTTTAATATCCAGTCGTTGAAATTACTTTCCTGAACTTTTAGAAGTTTTAAATGAATTCTGAAGCTCAGAATTTATCCAAACAGGACGAAGATTTCCTAGTCCATTGCCACTCGGTCACCATGATTTCGATTTCGAATCAATCCTCATCTTCGGTATTTTCGTCTGTTCCTTCTGAATTTTAATGATATTTCGCTGTATTCAGTGCCATGGTTTTTTCTCGAAAAATCGACAAATAAGAGTAATGACTTAGAAAGCATGGTGGCTGTGTGGCCATGGACTGGGAAATCCTCTTCCCTCCCGCACGATTAGAGAAATTTTCTTGACAGCAAAACTGTGCCACATCCGGCCGCAGCATTTTGGATAGTGGTCTAGCGGTCATACCAGTTTCTGGATCGCTGAACTTATTTCAAAACAAGAATTTTTTAAAAACGGACTGATTAGTCTCCGGCAACCTACTCATGGTCTGAGTCACGGTCGCGATTTGCATAGACTAATTTCCACATTTGCCTCATCCAAAATAGACTACAGTCGCCATCATTATGTTATCATTTTAGTATGATACCGTAATCATCAAAGGGTGTGACTCAGTGGTCAGTGATCAATGATGTAGGAAATCTTTTAAACACATTACTGGCGGTTGTTTGACCATTACCTTATCTTCCTTAACTTCTGACCCATACCCCCCCCCCCCCCCCCATTCCAACTCATGATAAAGTGTTACTACACACCCATTCAGTCTGTAAAATGCGTTTTCTAATTTTGCTTACTCTGATTTTTAGTTTTTCGAATGCTCTCAATATTCTGTTCTATCAAGCAGTTATCGGACCATCC</canonical>
            <polymorphic>AGATATAAAAAAGTTATCGACTGATAAATTGATCATCACAATATCACAAACATTTTATCAGACGATTCTTTTTTGATAACTCTCATAGGAGCCAAGAAAAATTGGCTCAAAGACAGCGTGGGAGCTCCTATTGAAAAATCATTAAACAGTTCCTATTTTGTGTAGCTATTTTAATATCCAGTCGTTGAAATTACTTTCCTGAACTTTTAGAAGTTTTAAATGAATTCTGAAGCTCAGAATTTATCCAAACAGGACGAAGATTTCCTAGTCCATTGCCACTCGGTCACCATGATTTCGATTTCGAATCAATCCTCATCTTCGGTATTTTCGTCTGTTCCTTCTGAATTTTAATGATATTTCGCTGTATTCAGTGCCATGGTTTTTTCTCGAAAAATCGACAAATAAGAGTAATGACTTAGAAAGCATGGTGGCTGTGTGGCCATGGACTGGGAAATCCTCTTCCCTCCCGCACGATTAGAGAAATTTTCTTGACAGCAAARCTGTGCCACATCCGGCCGCAGCATTTTGGATAGTGGTCTAGCGGTCATACCAGTTTCTGGATCGCTGAACTTATTTCAAAACAAGAATTTTTTAAAAACGGACTGATTAGTCTCCGGCAACCTACTCATGGTCTGAGTCACGGTCGCGATTTGCATAGACTAATTTCCACATTTGCCTCATCCAAAATAGACTACAGTCGCCATCATTATGTTATCATTTTAGTATGATACCGTAATCATCAAAGGGTGTGACTCAGTGGTCAGTGATCAATGATGTAGGAAATCTTTTAAACACATTACTGGCGGTTGTTTGACCATTACCTTATCTTCCTTAACTTCTGACCCATACCCCCCCCCCCCCCCCCATTCCAACTCATGATAAAGTGTTACTACACACCCATTCAGTCTGTAAAATGCGTTTTCTAATTTTGCTTACTCTGATTTTTAGTTTTTCGAATGCTCTCAATATTCTGTTCTATCAAGCAGTTATCGGACCATCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>354 268 148 140 54 36</canonical_bands>
                <polymorphic_bands>494 268 148 54 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGACAAATAAGAGTAATGACTTAGAA</pcr_primer_p1>
		<pcr_primer_p2>GTGGAAATTAGTCTATGCAAATC</pcr_primer_p2>
		<pcr_amplicon_size>275</pcr_amplicon_size>
		<canonical_amplicon>CGACAAATAAGAGTAATGACTTAGAAAGCATGGTGGCTGTGTGGCCATGGACTGGGAAATCCTCTTCCCTCCCGCACGATTAGAGAAATTTTCTTGACAGCAAAACTGTGCCACATCCGGCCGCAGCATTTTGGATAGTGGTCTAGCGGTCATACCAGTTTCTGGATCGCTGAACTTATTTCAAAACAAGAATTTTTTAAAAACGGACTGATTAGTCTCCGGCAACCTACTCATGGTCTGAGTCACGGTCGCGATTTGCATAGACTAATTTCCAC</canonical_amplicon>
		<polymorphic_amplicon>CGACAAATAAGAGTAATGACTTAGAAAGCATGGTGGCTGTGTGGCCATGGACTGGGAAATCCTCTTCCCTCCCGCACGATTAGAGAAATTTTCTTGACAGCAAARCTGTGCCACATCCGGCCGCAGCATTTTGGATAGTGGTCTAGCGGTCATACCAGTTTCTGGATCGCTGAACTTATTTCAAAACAAGAATTTTTTAAAAACGGACTGATTAGTCTCCGGCAACCTACTCATGGTCTGAGTCACGGTCGCGATTTGCATAGACTAATTTCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23119</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>429775</contig_pos>
        <strand>+</strand>
        <context>TGCATGCCTT[C/T]ACTGAGCCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTCAGGCGGATTTTGTATTCGTCTCTCACGCGAAAGCAATGCATGCCTT</left_flank>
        <right_flank>ACTGAGCCAGAAGCAGATAGTTTAATGCTCCAGGAGTCGGATACAATGAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAAGTAAGTTGATACGAATTTCAAATGATCAGTATCAAAACAATTCAGTTTGGCTACTTTGCCTTTGTCGCTGATGTTTACGGAAAAGGAGTGAGACCAACGGAGAGAGCAGAGGCGTTTGCGACAATGGGCCCACTTGTTTCGAATCGTGTTGAGAAACTCAAATCGAGACTGTTTGCTGCTTTGGAAAGTTTGAAGACGTTCTCCGAAGTTGATCAATCGAAGGTGGCAGCAATGGGATACTGTTTTGGAGGACTTTGTGTTCTCGATTTGGCTAGATACAATGCTCCTTTGAAGGCAGTTGTGTCTTTCCATGGAACATTGAAACCAATTCCGGATTTGCCACTTGACCCAATCAATGCGACAGCTGTACAAGTTCATCACGGAGATGCGGATTTCCATATTGCCAAAGATCAGGTCGATGGATTCCATGAGGAAATGAGAACTCGTCAGGCGGATTTTGTATTCGTCTCTCACGCGAAAGCAATGCATGCCTTCACTGAGCCAGAAGCAGATAGTTTAATGCTCCAGGAGTCGGATACAATGAAAAAGCGGCTAAAAGATCATGGAGAGCAGCAGTGGGACTATTTCATGAAGTCTTTGCTTGAAAAAAAAAAGGCATTTCATAGAATTTTTAGTTTTTATCGTGTAATGTCAACTATCAATAGAACTGGTCACAATGTATTGCGACCACTTGTCTAATTCCCCTCGTGCTTCAATAAATGAAGTATGATAACACTACACGTATAAAACAGTGGACGAACTGCAGAATACTCGACCTGGTTTAATTGTAAAATTTATTTTTTGGTTTTCGTCTGCTTTTGTGTTATTTTCTCAGGGCTTTTCAAGAATTACGTTGATCCATGAAACATTCAAGTACGAAGATGAGGATGTGAAACCTTATTCTGGTGAAATTCCCTCCGAGACACACCCCTATTTTTTTCACGTTTTAAATGCTGTACACCGTGACGGCAGAATGCGTCCCTTGACTTCAAAAA</canonical>
            <polymorphic>CAGAAGTAAGTTGATACGAATTTCAAATGATCAGTATCAAAACAATTCAGTTTGGCTACTTTGCCTTTGTCGCTGATGTTTACGGAAAAGGAGTGAGACCAACGGAGAGAGCAGAGGCGTTTGCGACAATGGGCCCACTTGTTTCGAATCGTGTTGAGAAACTCAAATCGAGACTGTTTGCTGCTTTGGAAAGTTTGAAGACGTTCTCCGAAGTTGATCAATCGAAGGTGGCAGCAATGGGATACTGTTTTGGAGGACTTTGTGTTCTCGATTTGGCTAGATACAATGCTCCTTTGAAGGCAGTTGTGTCTTTCCATGGAACATTGAAACCAATTCCGGATTTGCCACTTGACCCAATCAATGCGACAGCTGTACAAGTTCATCACGGAGATGCGGATTTCCATATTGCCAAAGATCAGGTCGATGGATTCCATGAGGAAATGAGAACTCGTCAGGCGGATTTTGTATTCGTCTCTCACGCGAAAGCAATGCATGCCTTYACTGAGCCAGAAGCAGATAGTTTAATGCTCCAGGAGTCGGATACAATGAAAAAGCGGCTAAAAGATCATGGAGAGCAGCAGTGGGACTATTTCATGAAGTCTTTGCTTGAAAAAAAAAAGGCATTTCATAGAATTTTTAGTTTTTATCGTGTAATGTCAACTATCAATAGAACTGGTCACAATGTATTGCGACCACTTGTCTAATTCCCCTCGTGCTTCAATAAATGAAGTATGATAACACTACACGTATAAAACAGTGGACGAACTGCAGAATACTCGACCTGGTTTAATTGTAAAATTTATTTTTTGGTTTTCGTCTGCTTTTGTGTTATTTTCTCAGGGCTTTTCAAGAATTACGTTGATCCATGAAACATTCAAGTACGAAGATGAGGATGTGAAACCTTATTCTGGTGAAATTCCCTCCGAGACACACCCCTATTTTTTTCACGTTTTAAATGCTGTACACCGTGACGGCAGAATGCGTCCCTTGACTTCAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>95 93 82 77 69 69 68 44 42 39 38 34 30 28 25 23 20 18 17 16 16 16 15 14 5 5 2</canonical_bands>
                <polymorphic_bands>105 95 93 77 69 69 68 44 42 39 38 34 30 28 25 20 18 17 16 16 16 15 14 5 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCCATGAGGAAATGAGAAC</pcr_primer_p1>
		<pcr_primer_p2>GACCAGTTCTATTGATAGTTGACA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTCCATGAGGAAATGAGAACTCGTCAGGCGGATTTTGTATTCGTCTCTCACGCGAAAGCAATGCATGCCTTCACTGAGCCAGAAGCAGATAGTTTAATGCTCCAGGAGTCGGATACAATGAAAAAGCGGCTAAAAGATCATGGAGAGCAGCAGTGGGACTATTTCATGAAGTCTTTGCTTGAAAAAAAAAAGGCATTTCATAGAATTTTTAGTTTTTATCGTGTAATGTCAACTATCAATAGAACTGGTC</canonical_amplicon>
		<polymorphic_amplicon>ATTCCATGAGGAAATGAGAACTCGTCAGGCGGATTTTGTATTCGTCTCTCACGCGAAAGCAATGCATGCCTTYACTGAGCCAGAAGCAGATAGTTTAATGCTCCAGGAGTCGGATACAATGAAAAAGCGGCTAAAAGATCATGGAGAGCAGCAGTGGGACTATTTCATGAAGTCTTTGCTTGAAAAAAAAAAGGCATTTCATAGAATTTTTAGTTTTTATCGTGTAATGTCAACTATCAATAGAACTGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23120</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>434381</contig_pos>
        <strand>+</strand>
        <context>AACGTTMTTT[A/G]TTCATAAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGGAACCATGGGAGGTTTCCAGGTGAGTTATCTTTGTTAAACGTTATTT</left_flank>
        <right_flank>TTCATAAAAGATCTTTATTAAATAATTATGACATTACATTGACAGAAATT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCCCTAAAATTGTTCTTGTAGTCCGAAGTTTATCCGTTCGCCTGTATTCCCACGGTTTTAAAATGAGTGGTTTCGAAGTGACGCGGAACCTTCAATTCGAATCAGAGTTGAAGGCGAGCCTGAAAACTGTTTAATGTTCTGTCTTTTTATTTCTCGATTAGCGTTTCACAAGAGTACATGTTTTGTGACTTTTGTAAAGTAGTAAAAAACGGACAAATTTGTTGTGTTCGCTGTCATGTGGATCTTGTCACTGTCTCTCTCTGTGTGTCCCTCAATTCTTGTATACTATTATATGAATATGTCAGAAATTACCGAAATCCGCCGGTCGGCTGGATAATCGTTTCGAATCGCGCCTTTTATGTGTCTATCTGTTGGGCTGTGTATGTGCCACGCTTGAAAAATTGTACATTTATCGACGAATTATTCGCACCGTTTGGTCGATTTGATCCGGAACCATGGGAGGTTTCCAGGTGAGTTATCTTTGTTAAACGTTATTTGTTCATAAAAGATCTTTATTAAATAATTATGACATTACATTGACAGAAATTTGTCGAATGGATACTGTAGATGGCATTGCCATTGTACTCGTCTTTTCATCTTCTTTTCGATTAATAATTACTCGAAGAAGAGCATTTCTGTAGGGAACTACGAAGTAGAATGAGATAAATGGGTCAATAAGAGCAGGAAGACATGTTAGAATCATCAGAAGATGTTCAGAAGCAAGATTCTCTTTTCCATTAAGTTGAGAATACGAGTAAACCGAAAATATTGGGATGTAGCATAGAAGAGGAATCAGAATTTGACAAGCTAGTCCCTGGAAACTTTCATGAAAACATGTGAATTTTTTGAAACGATTCACACATTTTAGTGGATGTTTCGTCATCTTTTCATGCCCGTTCTAGATGTTTCTTTCAAAAATAATTTCTTTTTTTTAAACTCACATGAACTAGTGTCTTGGCCTGTGCTTTGGTGCGAGTCGGCAAATTACTATGTGCTCG</canonical>
            <polymorphic>AAGCCCTAAAATTGTTCTTGTAGTCCGAAGTTTATCCGTTCGCCTGTATTCCCACGGTTTTAAAATGAGTGGTTTCGAAGTGACGCGGAACCTTCAATTCGAATCAGAGTTGAAGGCGAGCCTGAAAACTGTTTAATGTTCTGTCTTTTTATTTCTCGATTAGCGTTTCACAAGAGTACATGTTTTGTGACTTTTGTAAAGTAGTAAAAAACGGACAAATTTGTTGTGTTCGCTGTCATGTGGATCTTGTCACTGTCTCTCTCTGTGTGTCCCTCAATTCTTGTATACTATTATATGAATATGTCAGAAATTACCGAAATCCGCCGGTCGGCTGGATAATCGTTTCGAATCGCGCCTTTTATGTGTCTATCTGTTGGGCTGTGTATGTGCCACGCTTGAAAAATTGTACATTTATCGACGAATTATTCGCACCGTTTGGTCGATTTGATCCGGAACCATGGGAGGTTTCCAGGTGAGTTATCTTTGTTAAACGTTATTTRTTCATAAAAGATCTTTATTAAATAATTATGACATTACATTGACAGAAATTTGTCGAATGGATACTGTAGATGGCATTGCCATTGTACTCGTCTTTTCATCTTCTTTTCGATTAATAATTACTCGAAGAAGAGCATTTCTGTAGGGAACTACGAAGTAGAATGAGATAAATGGGTCAATAAGAGCAGGAAGACATGTTAGAATCATCAGAAGATGTTCAGAAGCAAGATTCTCTTTTCCATTAAGTTGAGAATACGAGTAAACCGAAAATATTGGGATGTAGCATAGAAGAGGAATCAGAATTTGACAAGCTAGTCCCTGGAAACTTTCATGAAAACATGTGAATTTTTTGAAACGATTCACACATTTTAGTGGATGTTTCGTCATCTTTTCATGCCCGTTCTAGATGTTTCTTTCAAAAATAATTTCTTTTTTTTAAACTCACATGAACTAGTGTCTTGGCCTGTGCTTTGGTGCGAGTCGGCAAATTACTATGTGCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCTTTTATGTGTCTATCTGTTG</pcr_primer_p1>
		<pcr_primer_p2>AAGATGAAAAGACGAGTACAATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCCTTTTATGTGTCTATCTGTTGGGCTGTGTATGTGCCACGCTTGAAAAATTGTACATTTATCGACGAATTATTCGCACCGTTTGGTCGATTTGATCCGGAACCATGGGAGGTTTCCAGGTGAGTTATCTTTGTTAAACGTTATTTGTTCATAAAAGATCTTTATTAAATAATTATGACATTACATTGACAGAAATTTGTCGAATGGATACTGTAGATGGCATTGCCATTGTACTCGTCTTTTCATCTT</canonical_amplicon>
		<polymorphic_amplicon>GCCTTTTATGTGTCTATCTGTTGGGCTGTGTATGTGCCACGCTTGAAAAATTGTACATTTATCGACGAATTATTCGCACCGTTTGGTCGATTTGATCCGGAACCATGGGAGGTTTCCAGGTGAGTTATCTTTGTTAAACGTTATTTRTTCATAAAAGATCTTTATTAAATAATTATGACATTACATTGACAGAAATTTGTCGAATGGATACTGTAGATGGCATTGCCATTGTACTCGTCTTTTCATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23121</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>434377</contig_pos>
        <strand>+</strand>
        <context>GTTAAACGTT[A/C]TTTRTTCATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGATCCGGAACCATGGGAGGTTTCCAGGTGAGTTATCTTTGTTAAACGTT</left_flank>
        <right_flank>TTTGTTCATAAAAGATCTTTATTAAATAATTATGACATTACATTGACAGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAAAGCCCTAAAATTGTTCTTGTAGTCCGAAGTTTATCCGTTCGCCTGTATTCCCACGGTTTTAAAATGAGTGGTTTCGAAGTGACGCGGAACCTTCAATTCGAATCAGAGTTGAAGGCGAGCCTGAAAACTGTTTAATGTTCTGTCTTTTTATTTCTCGATTAGCGTTTCACAAGAGTACATGTTTTGTGACTTTTGTAAAGTAGTAAAAAACGGACAAATTTGTTGTGTTCGCTGTCATGTGGATCTTGTCACTGTCTCTCTCTGTGTGTCCCTCAATTCTTGTATACTATTATATGAATATGTCAGAAATTACCGAAATCCGCCGGTCGGCTGGATAATCGTTTCGAATCGCGCCTTTTATGTGTCTATCTGTTGGGCTGTGTATGTGCCACGCTTGAAAAATTGTACATTTATCGACGAATTATTCGCACCGTTTGGTCGATTTGATCCGGAACCATGGGAGGTTTCCAGGTGAGTTATCTTTGTTAAACGTTATTTGTTCATAAAAGATCTTTATTAAATAATTATGACATTACATTGACAGAAATTTGTCGAATGGATACTGTAGATGGCATTGCCATTGTACTCGTCTTTTCATCTTCTTTTCGATTAATAATTACTCGAAGAAGAGCATTTCTGTAGGGAACTACGAAGTAGAATGAGATAAATGGGTCAATAAGAGCAGGAAGACATGTTAGAATCATCAGAAGATGTTCAGAAGCAAGATTCTCTTTTCCATTAAGTTGAGAATACGAGTAAACCGAAAATATTGGGATGTAGCATAGAAGAGGAATCAGAATTTGACAAGCTAGTCCCTGGAAACTTTCATGAAAACATGTGAATTTTTTGAAACGATTCACACATTTTAGTGGATGTTTCGTCATCTTTTCATGCCCGTTCTAGATGTTTCTTTCAAAAATAATTTCTTTTTTTTAAACTCACATGAACTAGTGTCTTGGCCTGTGCTTTGGTGCGAGTCGGCAAATTACTATGTG</canonical>
            <polymorphic>TTTAAAGCCCTAAAATTGTTCTTGTAGTCCGAAGTTTATCCGTTCGCCTGTATTCCCACGGTTTTAAAATGAGTGGTTTCGAAGTGACGCGGAACCTTCAATTCGAATCAGAGTTGAAGGCGAGCCTGAAAACTGTTTAATGTTCTGTCTTTTTATTTCTCGATTAGCGTTTCACAAGAGTACATGTTTTGTGACTTTTGTAAAGTAGTAAAAAACGGACAAATTTGTTGTGTTCGCTGTCATGTGGATCTTGTCACTGTCTCTCTCTGTGTGTCCCTCAATTCTTGTATACTATTATATGAATATGTCAGAAATTACCGAAATCCGCCGGTCGGCTGGATAATCGTTTCGAATCGCGCCTTTTATGTGTCTATCTGTTGGGCTGTGTATGTGCCACGCTTGAAAAATTGTACATTTATCGACGAATTATTCGCACCGTTTGGTCGATTTGATCCGGAACCATGGGAGGTTTCCAGGTGAGTTATCTTTGTTAAACGTTMTTTGTTCATAAAAGATCTTTATTAAATAATTATGACATTACATTGACAGAAATTTGTCGAATGGATACTGTAGATGGCATTGCCATTGTACTCGTCTTTTCATCTTCTTTTCGATTAATAATTACTCGAAGAAGAGCATTTCTGTAGGGAACTACGAAGTAGAATGAGATAAATGGGTCAATAAGAGCAGGAAGACATGTTAGAATCATCAGAAGATGTTCAGAAGCAAGATTCTCTTTTCCATTAAGTTGAGAATACGAGTAAACCGAAAATATTGGGATGTAGCATAGAAGAGGAATCAGAATTTGACAAGCTAGTCCCTGGAAACTTTCATGAAAACATGTGAATTTTTTGAAACGATTCACACATTTTAGTGGATGTTTCGTCATCTTTTCATGCCCGTTCTAGATGTTTCTTTCAAAAATAATTTCTTTTTTTTAAACTCACATGAACTAGTGTCTTGGCCTGTGCTTTGGTGCGAGTCGGCAAATTACTATGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCTTTTATGTGTCTATCTGTTG</pcr_primer_p1>
		<pcr_primer_p2>AAGATGAAAAGACGAGTACAATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCCTTTTATGTGTCTATCTGTTGGGCTGTGTATGTGCCACGCTTGAAAAATTGTACATTTATCGACGAATTATTCGCACCGTTTGGTCGATTTGATCCGGAACCATGGGAGGTTTCCAGGTGAGTTATCTTTGTTAAACGTTATTTGTTCATAAAAGATCTTTATTAAATAATTATGACATTACATTGACAGAAATTTGTCGAATGGATACTGTAGATGGCATTGCCATTGTACTCGTCTTTTCATCTT</canonical_amplicon>
		<polymorphic_amplicon>GCCTTTTATGTGTCTATCTGTTGGGCTGTGTATGTGCCACGCTTGAAAAATTGTACATTTATCGACGAATTATTCGCACCGTTTGGTCGATTTGATCCGGAACCATGGGAGGTTTCCAGGTGAGTTATCTTTGTTAAACGTTMTTTGTTCATAAAAGATCTTTATTAAATAATTATGACATTACATTGACAGAAATTTGTCGAATGGATACTGTAGATGGCATTGCCATTGTACTCGTCTTTTCATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23122</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>445769</contig_pos>
        <strand>+</strand>
        <context>GCGAAATTTT[C/G]AAATTTTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTATAATTCCTATAACTATCTACTATCCGGAACTTCTTTTGCGAAATTTT</left_flank>
        <right_flank>AAATTTTGAAATTTCAAAACTTCCGACTGGTTCAACGTATTCGAAAAACG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTTTCTAGTAAACTCAGTGGAACTCTCTAAAGTGCATCATCGTTTCAAAATCTGACATCAAAAAATTTGAATATCCGGCTGATCATTGAATTCCGATGACCACTACAAAGACAAAAACGGGTTGACCTAGCAATTCTTCCAAAAGGTTTATCCCTAAATTGTTTATCTCTATTCACTTCCTTTAACGTCAATGCCCAGAATTGTTGCATATGATTTACACATTTTCCCCGCTTTTCTATATTTTCCCAAAAAATGATTCCATTTTGTATCTGTGTGGCATGATGGGATATTTATCTGCTGCAATTAATTCGTTTGACATTTTCTAAAAAAGGAAGTAGTATTATTAGTAGAAGTAAAACTAATCCATCATTTCCCAGCTCTTGTTTTCTCTTTTGAAGTTCAATGATAGAAGTTCAGTTGAGAATTGAGAGAATATGAAGAGTTACTTATAATTCCTATAACTATCTACTATCCGGAACTTCTTTTGCGAAATTTTGAAATTTTGAAATTTCAAAACTTCCGACTGGTTCAACGTATTCGAAAAACGTGCCATCTCAAGAATAGATAGTATGCGCCAGACTGTCGTTGGTCATTTTTATCAGTTTTCGGAGGGTTTCAGCTTTCTAGCTGAAATAATTACGACAGGAAGTACATACTCTTATAGTTAAGAATAGAGACGAAAAGTCACAATTGCGACAAAAATATGTGTATAGTTTTATAGCGTTTATAGTATTTGGATTGAAACATTAAGAATTACATATTTTGGTAGATGATTATCACATTTTCTTCCACTGTCATCGAATACCGTAAAGCCCCTAATAGGAAGGCCGACTCCTCTAATGTTCCATGACTCCTCCGGAGAGCCTTTATATAACAAAGGTCCAATAATTGAAGGGGCTCTTCTACTTTTCCAGCCATTTTTCGGAAAAATTTCCACAAAAAATTGGTGATGTCTCGTTCAAAATTAATTAAAATTTATTAATTTAACCAAAATTGA</canonical>
            <polymorphic>TAATTTTCTAGTAAACTCAGTGGAACTCTCTAAAGTGCATCATCGTTTCAAAATCTGACATCAAAAAATTTGAATATCCGGCTGATCATTGAATTCCGATGACCACTACAAAGACAAAAACGGGTTGACCTAGCAATTCTTCCAAAAGGTTTATCCCTAAATTGTTTATCTCTATTCACTTCCTTTAACGTCAATGCCCAGAATTGTTGCATATGATTTACACATTTTCCCCGCTTTTCTATATTTTCCCAAAAAATGATTCCATTTTGTATCTGTGTGGCATGATGGGATATTTATCTGCTGCAATTAATTCGTTTGACATTTTCTAAAAAAGGAAGTAGTATTATTAGTAGAAGTAAAACTAATCCATCATTTCCCAGCTCTTGTTTTCTCTTTTGAAGTTCAATGATAGAAGTTCAGTTGAGAATTGAGAGAATATGAAGAGTTACTTATAATTCCTATAACTATCTACTATCCGGAACTTCTTTTGCGAAATTTTSAAATTTTGAAATTTCAAAACTTCCGACTGGTTCAACGTATTCGAAAAACGTGCCATCTCAAGAATAGATAGTATGCGCCAGACTGTCGTTGGTCATTTTTATCAGTTTTCGGAGGGTTTCAGCTTTCTAGCTGAAATAATTACGACAGGAAGTACATACTCTTATAGTTAAGAATAGAGACGAAAAGTCACAATTGCGACAAAAATATGTGTATAGTTTTATAGCGTTTATAGTATTTGGATTGAAACATTAAGAATTACATATTTTGGTAGATGATTATCACATTTTCTTCCACTGTCATCGAATACCGTAAAGCCCCTAATAGGAAGGCCGACTCCTCTAATGTTCCATGACTCCTCCGGAGAGCCTTTATATAACAAAGGTCCAATAATTGAAGGGGCTCTTCTACTTTTCCAGCCATTTTTCGGAAAAATTTCCACAAAAAATTGGTGATGTCTCGTTCAAAATTAATTAAAATTTATTAATTTAACCAAAATTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAATGATAGAAGTTCAGTTGAG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGTCGTAATTATTTCAGCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCAATGATAGAAGTTCAGTTGAGAATTGAGAGAATATGAAGAGTTACTTATAATTCCTATAACTATCTACTATCCGGAACTTCTTTTGCGAAATTTTGAAATTTTGAAATTTCAAAACTTCCGACTGGTTCAACGTATTCGAAAAACGTGCCATCTCAAGAATAGATAGTATGCGCCAGACTGTCGTTGGTCATTTTTATCAGTTTTCGGAGGGTTTCAGCTTTCTAGCTGAAATAATTACGACAGGA</canonical_amplicon>
		<polymorphic_amplicon>TTCAATGATAGAAGTTCAGTTGAGAATTGAGAGAATATGAAGAGTTACTTATAATTCCTATAACTATCTACTATCCGGAACTTCTTTTGCGAAATTTTSAAATTTTGAAATTTCAAAACTTCCGACTGGTTCAACGTATTCGAAAAACGTGCCATCTCAAGAATAGATAGTATGCGCCAGACTGTCGTTGGTCATTTTTATCAGTTTTCGGAGGGTTTCAGCTTTCTAGCTGAAATAATTACGACAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23124</snp_id>
        <super_contig>c014101066.Contig1</super_contig>
        <contig_pos>10254</contig_pos>
        <strand></strand>
        <context>CTTTCCCGTA[C/A]TGGACCATGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTGCTCCATGAGGACGTTGTCAAAATCACGGACTTTGGTCTTTCCCGTA</left_flank>
        <right_flank>TGGACCATGTTACAAATTAAGAACGACATGCAAACTGCCAGTGAAATGGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATGAGCTAGAAAAGTAAAACCAATCTCATTCTACAGGATTTTCTATTTTTTTAAACTAATATTTGTGAATTTTAAGAATCTTATGAAAATTTAAATAAATTGATTAGCCTTTTTAATGCAAATTCCAATTTCCCACTTCAAACTACACATTTCTATCTAAAACCAGCTTTCTAGCTATTCTACAACTCGAGATACAAGCTGTTGACGTTTTGCAGGCGAGAGAGTGGAGAAAAGAAGGAGTGCGCGCAGACGAGGAGACTGTCTGCGCCCTCCTCTTTCCCCGCGCTCTCTCGCTTCTTGAAACTTCAATCGACTATATCTCGGGTCCCAGATAAGCTAGAAAGTTGGTTTTTTGACTGAAATGTGCAGTTTAAAGTGGAAAATTCGAATTTACATTAAACTTAAACGAAAAATTAAATTTTCCAGAGACATCGCCGCGCGCAACTGTTTGCTCCATGAGGACGTTGTCAAAATCACGGACTTTGGTCTTTCCCGTACTGGACCATGTTACAAATTAAGAACGACATGCAAACTGCCAGTGAAATGGTTGGCTCCGGAGACATTGTCCACGCTCACATTCACCTACGCAACCGATGTTTATAGGTACTACTGGAGCTCAATTATCTCGGCTCATATGAAAAATAACAAAATATTGTTAACTGATAAAAAACTTGTCATTTTATCAGCTACATTTTATTAGTTGACCACTTTTTGATATCTTTTATGGGAACCATGATAAATAAGATCAAACAGATTGAAGTCGCCGGGGAAGAAGGGTGTTTGGTTGCTTTGAGCCCAATTATCTTGGCTCCTATTAGAGATATTAAAATTTTGCCAATTGACAAAATGTTTGCCATGATTAAAACTACATTTTCTTACTTGACAAATTTTTGATATCTTTCATAGAAAACGAATAACGCGCAGCTCAGACGATCAGACGGTGCCAGCAGACATGTCTACCTTGCGCTCAATTATCTCGGCCCCTGTAACAGATATCA</canonical>
            <polymorphic>AGATGAGCTAGAAAAGTAAAACCAATCTCATTCTACAGGATTTTCTATTTTTTTAAACTAATATTTGTGAATTTTAAGAATCTTATGAAAATTTAAATAAATTGATTAGCCTTTTTAATGCAAATTCCAATTTCCCACTTCAAACTACACATTTCTATCTAAAACCAGCTTTCTAGCTATTCTACAACTCGAGATACAAGCTGTTGACGTTTTGCAGGCGAGAGAGTGGAGAAAAGAAGGAGTGCGCGCAGACGAGGAGACTGTCTGCGCCCTCCTCTTTCCCCGCGCTCTCTCGCTTCTTGAAACTTCAATCGACTATATCTCGGGTCCCAGATAAGCTAGAAAGTTGGTTTTTTGACTGAAATGTGCAGTTTAAAGTGGAAAATTCGAATTTACATTAAACTTAAACGAAAAATTAAATTTTCCAGAGACATCGCCGCGCGCAACTGTTTGCTCCATGAGGACGTTGTCAAAATCACGGACTTTGGTCTTTCCCGTAMTGGACCATGTTACAAATTAAGAACGACATGCAAACTGCCAGTGAAATGGTTGGCTCCGGAGACATTGTCCACGCTCACATTCACCTACGCAACCGATGTTTATAGGTACTACTGGAGCTCAATTATCTCGGCTCATATGAAAAATAACAAAATATTGTTAACTGATAAAAAACTTGTCATTTTATCAGCTACATTTTATTAGTTGACCACTTTTTGATATCTTTTATGGGAACCATGATAAATAAGATCAAACAGATTGAAGTCGCCGGGGAAGAAGGGTGTTTGGTTGCTTTGAGCCCAATTATCTTGGCTCCTATTAGAGATATTAAAATTTTGCCAATTGACAAAATGTTTGCCATGATTAAAACTACATTTTCTTACTTGACAAATTTTTGATATCTTTCATAGAAAACGAATAACGCGCAGCTCAGACGATCAGACGGTGCCAGCAGACATGTCTACCTTGCGCTCAATTATCTCGGCCCCTGTAACAGATATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>498 393 109</canonical_bands>
                <polymorphic_bands>607 393</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACTTCAAACTACACATTTCTAT</pcr_primer_p1>
		<pcr_primer_p2>CTATAAACATCGGTTGCGTAG</pcr_primer_p2>
		<pcr_amplicon_size>471</pcr_amplicon_size>
		<canonical_amplicon>CCACTTCAAACTACACATTTCTATCTAAAACCAGCTTTCTAGCTATTCTACAACTCGAGATACAAGCTGTTGACGTTTTGCAGGCGAGAGAGTGGAGAAAAGAAGGAGTGCGCGCAGACGAGGAGACTGTCTGCGCCCTCCTCTTTCCCCGCGCTCTCTCGCTTCTTGAAACTTCAATCGACTATATCTCGGGTCCCAGATAAGCTAGAAAGTTGGTTTTTTGACTGAAATGTGCAGTTTAAAGTGGAAAATTCGAATTTACATTAAACTTAAACGAAAAATTAAATTTTCCAGAGACATCGCCGCGCGCAACTGTTTGCTCCATGAGGACGTTGTCAAAATCACGGACTTTGGTCTTTCCCGTACTGGACCATGTTACAAATTAAGAACGACATGCAAACTGCCAGTGAAATGGTTGGCTCCGGAGACATTGTCCACGCTCACATTCACCTACGCAACCGATGTTTATAG</canonical_amplicon>
		<polymorphic_amplicon>CCACTTCAAACTACACATTTCTATCTAAAACCAGCTTTCTAGCTATTCTACAACTCGAGATACAAGCTGTTGACGTTTTGCAGGCGAGAGAGTGGAGAAAAGAAGGAGTGCGCGCAGACGAGGAGACTGTCTGCGCCCTCCTCTTTCCCCGCGCTCTCTCGCTTCTTGAAACTTCAATCGACTATATCTCGGGTCCCAGATAAGCTAGAAAGTTGGTTTTTTGACTGAAATGTGCAGTTTAAAGTGGAAAATTCGAATTTACATTAAACTTAAACGAAAAATTAAATTTTCCAGAGACATCGCCGCGCGCAACTGTTTGCTCCATGAGGACGTTGTCAAAATCACGGACTTTGGTCTTTCCCGTAMTGGACCATGTTACAAATTAAGAACGACATGCAAACTGCCAGTGAAATGGTTGGCTCCGGAGACATTGTCCACGCTCACATTCACCTACGCAACCGATGTTTATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23125</snp_id>
        <super_contig>c014200791.Contig3</super_contig>
        <contig_pos>7550</contig_pos>
        <strand></strand>
        <context>TCTAAAAATC[A/G]TATTTTTCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGATAATTTTGAAACATCAGTTATTATTTTTTGAATTTTCTAAAAATC</left_flank>
        <right_flank>TATTTTTCGAAATAAATCACTGTGACCTATTTTTTATCCGAATTTCCCTC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCTGGCAGAAATTGAATTGCATATGCGATTCGCAGCTTTTTTGGGCTCCAAATCTGCAAATTTAGATTGCGAATTTGTTACAATTAAGAGTTAATTACCTGATGATGGCGATTTGGAAAAATGATAGCTGATAAGCGATTGGTGGCAAGAACAGAGACACACATGGCTTGGCAGATTCCTGGGAAACTTAATTTTGAGTTTAAAAGAAGTTCAGTCATTGTGTTAAACATAACAGGAAAATTTGAAGTCAACTTTTTGAAATAGTAATTTTTGAAATTTGGACTATTGCAGGTCTCTAAACAAGATATTTCTATATCCTAATTGGATTTTAAAAGACGAAAACTAGAAAATTCTTGGAACTCACGTCAGAGAAACAATTCAGAGAAACAAATAAAGTGAGATGACGACTTAGATGTCGAATTGAAATTCGTAATAAGTTTTCAAAATTCTGATAATTTTGAAACATCAGTTATTATTTTTTGAATTTTCTAAAAATCATATTTTTCGAAATAAATCACTGTGACCTATTTTTTATCCGAATTTCCCTCCAAAAATGAGTCATAAGACTCCGATTCAATTACCAGGTAGTATTTATTTTTTCGTTTTAAATAATTTTTGATCAGTAATCTATGACTTAGGTTTTTATGATATGTGATTCAAAACCTTTAATAGAAGGGCACTTTGAACTTTCGAGCTAATTTTTTTCGGTTCCTGTCAAAGATATCAAACAGTTGTCAACTGATAAATTGTTTATCATGATATCATAAACATTTTATCGTTGGAATATTTTTGATATCTTGCATAGGGGCCAAATTATTAAAATTAGCTCGAACTTGATAACTCTTGTATTACAGGTTCTACGGTACAAGTTTCTGATTGTCTTTAGTTAAATCTTTCAATTAATTTCGCCAAGGAACGGATAGATTGTAATCAGTTAATACTTTTTTAATCATGGAATTTGAAAAACAGTATTTATTTTTCTAAATCTTTCAGATATA</canonical>
            <polymorphic>TTCCTGGCAGAAATTGAATTGCATATGCGATTCGCAGCTTTTTTGGGCTCCAAATCTGCAAATTTAGATTGCGAATTTGTTACAATTAAGAGTTAATTACCTGATGATGGCGATTTGGAAAAATGATAGCTGATAAGCGATTGGTGGCAAGAACAGAGACACACATGGCTTGGCAGATTCCTGGGAAACTTAATTTTGAGTTTAAAAGAAGTTCAGTCATTGTGTTAAACATAACAGGAAAATTTGAAGTCAACTTTTTGAAATAGTAATTTTTGAAATTTGGACTATTGCAGGTCTCTAAACAAGATATTTCTATATCCTAATTGGATTTTAAAAGACGAAAACTAGAAAATTCTTGGAACTCACGTCAGAGAAACAATTCAGAGAAACAAATAAAGTGAGATGACGACTTAGATGTCGAATTGAAATTCGTAATAAGTTTTCAAAATTCTGATAATTTTGAAACATCAGTTATTATTTTTTGAATTTTCTAAAAATCRTATTTTTCGAAATAAATCACTGTGACCTATTTTTTATCCGAATTTCCCTCCAAAAATGAGTCATAAGACTCCGATTCAATTACCAGGTAGTATTTATTTTTTCGTTTTAAATAATTTTTGATCAGTAATCTATGACTTAGGTTTTTATGATATGTGATTCAAAACCTTTAATAGAAGGGCACTTTGAACTTTCGAGCTAATTTTTTTCGGTTCCTGTCAAAGATATCAAACAGTTGTCAACTGATAAATTGTTTATCATGATATCATAAACATTTTATCGTTGGAATATTTTTGATATCTTGCATAGGGGCCAAATTATTAAAATTAGCTCGAACTTGATAACTCTTGTATTACAGGTTCTACGGTACAAGTTTCTGATTGTCTTTAGTTAAATCTTTCAATTAATTTCGCCAAGGAACGGATAGATTGTAATCAGTTAATACTTTTTTAATCATGGAATTTGAAAAACAGTATTTATTTTTCTAAATCTTTCAGATATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGTGAGATGACGACTTAGATG</pcr_primer_p1>
		<pcr_primer_p2>ACCTAAGTCATAGATTACTGATCAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAGTGAGATGACGACTTAGATGTCGAATTGAAATTCGTAATAAGTTTTCAAAATTCTGATAATTTTGAAACATCAGTTATTATTTTTTGAATTTTCTAAAAATCATATTTTTCGAAATAAATCACTGTGACCTATTTTTTATCCGAATTTCCCTCCAAAAATGAGTCATAAGACTCCGATTCAATTACCAGGTAGTATTTATTTTTTCGTTTTAAATAATTTTTGATCAGTAATCTATGACTTAGGT</canonical_amplicon>
		<polymorphic_amplicon>AAAGTGAGATGACGACTTAGATGTCGAATTGAAATTCGTAATAAGTTTTCAAAATTCTGATAATTTTGAAACATCAGTTATTATTTTTTGAATTTTCTAAAAATCRTATTTTTCGAAATAAATCACTGTGACCTATTTTTTATCCGAATTTCCCTCCAAAAATGAGTCATAAGACTCCGATTCAATTACCAGGTAGTATTTATTTTTTCGTTTTAAATAATTTTTGATCAGTAATCTATGACTTAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23126</snp_id>
        <super_contig>c014200791.Contig3</super_contig>
        <contig_pos>7590</contig_pos>
        <strand></strand>
        <context>TTTTTTATCC[G/T]AATTTCCCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTAAAAATCATATTTTTCGAAATAAATCACTGTGACCTATTTTTTATCC</left_flank>
        <right_flank>AATTTCCCTCCAAAAATGAGTCATAAGACTCCGATTCAATTACCAGGTAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGGGCTCCAAATCTGCAAATTTAGATTGCGAATTTGTTACAATTAAGAGTTAATTACCTGATGATGGCGATTTGGAAAAATGATAGCTGATAAGCGATTGGTGGCAAGAACAGAGACACACATGGCTTGGCAGATTCCTGGGAAACTTAATTTTGAGTTTAAAAGAAGTTCAGTCATTGTGTTAAACATAACAGGAAAATTTGAAGTCAACTTTTTGAAATAGTAATTTTTGAAATTTGGACTATTGCAGGTCTCTAAACAAGATATTTCTATATCCTAATTGGATTTTAAAAGACGAAAACTAGAAAATTCTTGGAACTCACGTCAGAGAAACAATTCAGAGAAACAAATAAAGTGAGATGACGACTTAGATGTCGAATTGAAATTCGTAATAAGTTTTCAAAATTCTGATAATTTTGAAACATCAGTTATTATTTTTTGAATTTTCTAAAAATCATATTTTTCGAAATAAATCACTGTGACCTATTTTTTATCCGAATTTCCCTCCAAAAATGAGTCATAAGACTCCGATTCAATTACCAGGTAGTATTTATTTTTTCGTTTTAAATAATTTTTGATCAGTAATCTATGACTTAGGTTTTTATGATATGTGATTCAAAACCTTTAATAGAAGGGCACTTTGAACTTTCGAGCTAATTTTTTTCGGTTCCTGTCAAAGATATCAAACAGTTGTCAACTGATAAATTGTTTATCATGATATCATAAACATTTTATCGTTGGAATATTTTTGATATCTTGCATAGGGGCCAAATTATTAAAATTAGCTCGAACTTGATAACTCTTGTATTACAGGTTCTACGGTACAAGTTTCTGATTGTCTTTAGTTAAATCTTTCAATTAATTTCGCCAAGGAACGGATAGATTGTAATCAGTTAATACTTTTTTAATCATGGAATTTGAAAAACAGTATTTATTTTTCTAAATCTTTCAGATATATTTTCAAATTATTAAGAAAAAATGTTGTTTAAAGATTACT</canonical>
            <polymorphic>TTTTGGGCTCCAAATCTGCAAATTTAGATTGCGAATTTGTTACAATTAAGAGTTAATTACCTGATGATGGCGATTTGGAAAAATGATAGCTGATAAGCGATTGGTGGCAAGAACAGAGACACACATGGCTTGGCAGATTCCTGGGAAACTTAATTTTGAGTTTAAAAGAAGTTCAGTCATTGTGTTAAACATAACAGGAAAATTTGAAGTCAACTTTTTGAAATAGTAATTTTTGAAATTTGGACTATTGCAGGTCTCTAAACAAGATATTTCTATATCCTAATTGGATTTTAAAAGACGAAAACTAGAAAATTCTTGGAACTCACGTCAGAGAAACAATTCAGAGAAACAAATAAAGTGAGATGACGACTTAGATGTCGAATTGAAATTCGTAATAAGTTTTCAAAATTCTGATAATTTTGAAACATCAGTTATTATTTTTTGAATTTTCTAAAAATCATATTTTTCGAAATAAATCACTGTGACCTATTTTTTATCCKAATTTCCCTCCAAAAATGAGTCATAAGACTCCGATTCAATTACCAGGTAGTATTTATTTTTTCGTTTTAAATAATTTTTGATCAGTAATCTATGACTTAGGTTTTTATGATATGTGATTCAAAACCTTTAATAGAAGGGCACTTTGAACTTTCGAGCTAATTTTTTTCGGTTCCTGTCAAAGATATCAAACAGTTGTCAACTGATAAATTGTTTATCATGATATCATAAACATTTTATCGTTGGAATATTTTTGATATCTTGCATAGGGGCCAAATTATTAAAATTAGCTCGAACTTGATAACTCTTGTATTACAGGTTCTACGGTACAAGTTTCTGATTGTCTTTAGTTAAATCTTTCAATTAATTTCGCCAAGGAACGGATAGATTGTAATCAGTTAATACTTTTTTAATCATGGAATTTGAAAAACAGTATTTATTTTTCTAAATCTTTCAGATATATTTTCAAATTATTAAGAAAAAATGTTGTTTAAAGATTACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>417 167 83 76 74 56 38 36 20 20 13</canonical_bands>
                <polymorphic_bands>473 167 83 76 74 38 36 20 20 13</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>330 304 118 87 69 46 33 13</canonical_bands>
                <polymorphic_bands>330 304 120 118 69 46 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGTGAGATGACGACTTAGATG</pcr_primer_p1>
		<pcr_primer_p2>ACCTAAGTCATAGATTACTGATCAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAGTGAGATGACGACTTAGATGTCGAATTGAAATTCGTAATAAGTTTTCAAAATTCTGATAATTTTGAAACATCAGTTATTATTTTTTGAATTTTCTAAAAATCATATTTTTCGAAATAAATCACTGTGACCTATTTTTTATCCGAATTTCCCTCCAAAAATGAGTCATAAGACTCCGATTCAATTACCAGGTAGTATTTATTTTTTCGTTTTAAATAATTTTTGATCAGTAATCTATGACTTAGGT</canonical_amplicon>
		<polymorphic_amplicon>AAAGTGAGATGACGACTTAGATGTCGAATTGAAATTCGTAATAAGTTTTCAAAATTCTGATAATTTTGAAACATCAGTTATTATTTTTTGAATTTTCTAAAAATCATATTTTTCGAAATAAATCACTGTGACCTATTTTTTATCCKAATTTCCCTCCAAAAATGAGTCATAAGACTCCGATTCAATTACCAGGTAGTATTTATTTTTTCGTTTTAAATAATTTTTGATCAGTAATCTATGACTTAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23127</snp_id>
        <super_contig>c014200791.Contig3</super_contig>
        <contig_pos>7931</contig_pos>
        <strand></strand>
        <context>GTTTCTGATT[G/T]TCTTTAGTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGAACTTGATAACTCTTGTATTACAGGTTCTACGGTACAAGTTTCTGATT</left_flank>
        <right_flank>TCTTTAGTTAAATCTTTCAATTAATTTCGCCAAGGAACGGATAGATTGTA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAGAAACAAATAAAGTGAGATGACGACTTAGATGTCGAATTGAAATTCGTAATAAGTTTTCAAAATTCTGATAATTTTGAAACATCAGTTATTATTTTTTGAATTTTCTAAAAATCATATTTTTCGAAATAAATCACTGTGACCTATTTTTTATCCGAATTTCCCTCCAAAAATGAGTCATAAGACTCCGATTCAATTACCAGGTAGTATTTATTTTTTCGTTTTAAATAATTTTTGATCAGTAATCTATGACTTAGGTTTTTATGATATGTGATTCAAAACCTTTAATAGAAGGGCACTTTGAACTTTCGAGCTAATTTTTTTCGGTTCCTGTCAAAGATATCAAACAGTTGTCAACTGATAAATTGTTTATCATGATATCATAAACATTTTATCGTTGGAATATTTTTGATATCTTGCATAGGGGCCAAATTATTAAAATTAGCTCGAACTTGATAACTCTTGTATTACAGGTTCTACGGTACAAGTTTCTGATTGTCTTTAGTTAAATCTTTCAATTAATTTCGCCAAGGAACGGATAGATTGTAATCAGTTAATACTTTTTTAATCATGGAATTTGAAAAACAGTATTTATTTTTCTAAATCTTTCAGATATATTTTCAAATTATTAAGAAAAAATGTTGTTTAAAGATTACTTTTTTCTTTGAAATTTCAGAATTTTAATTATTTATCTCAAGCTGTAACTAGGGTTTCCATTTGGGCAGGTGAAGAAGCGGGCTACCCGCTACCCACCCGGGGGGCTCCCACCCGTGGCTCCCCGCGGCCCCTCGCAATTAAATGCGTGTGAATTTTAATAAAATTTTTAAGGATAATCACGTATTTTCCATGAAAAACTGATTTTCTCAAATCAAAAAACTACAAAAAAGATAATATTTTCCTCACGTAATTATTCGAGGGGGGTCAACGGGGGGCCGCGGGGGGTGAGCCCCCCGGGTGGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>CAGAGAAACAAATAAAGTGAGATGACGACTTAGATGTCGAATTGAAATTCGTAATAAGTTTTCAAAATTCTGATAATTTTGAAACATCAGTTATTATTTTTTGAATTTTCTAAAAATCATATTTTTCGAAATAAATCACTGTGACCTATTTTTTATCCGAATTTCCCTCCAAAAATGAGTCATAAGACTCCGATTCAATTACCAGGTAGTATTTATTTTTTCGTTTTAAATAATTTTTGATCAGTAATCTATGACTTAGGTTTTTATGATATGTGATTCAAAACCTTTAATAGAAGGGCACTTTGAACTTTCGAGCTAATTTTTTTCGGTTCCTGTCAAAGATATCAAACAGTTGTCAACTGATAAATTGTTTATCATGATATCATAAACATTTTATCGTTGGAATATTTTTGATATCTTGCATAGGGGCCAAATTATTAAAATTAGCTCGAACTTGATAACTCTTGTATTACAGGTTCTACGGTACAAGTTTCTGATTKTCTTTAGTTAAATCTTTCAATTAATTTCGCCAAGGAACGGATAGATTGTAATCAGTTAATACTTTTTTAATCATGGAATTTGAAAAACAGTATTTATTTTTCTAAATCTTTCAGATATATTTTCAAATTATTAAGAAAAAATGTTGTTTAAAGATTACTTTTTTCTTTGAAATTTCAGAATTTTAATTATTTATCTCAAGCTGTAACTAGGGTTTCCATTTGGGCAGGTGAAGAAGCGGGCTACCCGCTACCCACCCGGGGGGCTCCCACCCGTGGCTCCCCGCGGCCCCTCGCAATTAAATGCGTGTGAATTTTAATAAAATTTTTAAGGATAATCACGTATTTTCCATGAAAAACTGATTTTCTCAAATCAAAAAACTACAAAAAAGATAATATTTTCCTCACGTAATTATTCGAGGGGGGTCAACGGGGGGCCGCGGGGGGTGAGCCCCCCGGGTGGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACTTAGGTTTTTATGATATGTGA</pcr_primer_p1>
		<pcr_primer_p2>CTGATTACAATCTATCCGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>304</pcr_amplicon_size>
		<canonical_amplicon>TGACTTAGGTTTTTATGATATGTGATTCAAAACCTTTAATAGAAGGGCACTTTGAACTTTCGAGCTAATTTTTTTCGGTTCCTGTCAAAGATATCAAACAGTTGTCAACTGATAAATTGTTTATCATGATATCATAAACATTTTATCGTTGGAATATTTTTGATATCTTGCATAGGGGCCAAATTATTAAAATTAGCTCGAACTTGATAACTCTTGTATTACAGGTTCTACGGTACAAGTTTCTGATTGTCTTTAGTTAAATCTTTCAATTAATTTCGCCAAGGAACGGATAGATTGTAATCAG</canonical_amplicon>
		<polymorphic_amplicon>TGACTTAGGTTTTTATGATATGTGATTCAAAACCTTTAATAGAAGGGCACTTTGAACTTTCGAGCTAATTTTTTTCGGTTCCTGTCAAAGATATCAAACAGTTGTCAACTGATAAATTGTTTATCATGATATCATAAACATTTTATCGTTGGAATATTTTTGATATCTTGCATAGGGGCCAAATTATTAAAATTAGCTCGAACTTGATAACTCTTGTATTACAGGTTCTACGGTACAAGTTTCTGATTKTCTTTAGTTAAATCTTTCAATTAATTTCGCCAAGGAACGGATAGATTGTAATCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23128</snp_id>
        <super_contig>c014200791.Contig3</super_contig>
        <contig_pos>13949</contig_pos>
        <strand>+</strand>
        <context>TTTTGAAACR[A/G]TGAAATTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCACTCAACACTGGAAAAATTTCATTTTGTTATCAAACTTTTGAAACG</left_flank>
        <right_flank>TGAAATTTTTTTGAAACTTTTCAAATTCCCCGCTAACTCACAATAGCATT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTGAGAATCTTACCTGATAGCATTATAGCATAAATAAAATGTATCCAGCGGGAAATTCAATAGTGACGTTGCATAAATAATCACCAGGACCAGAATAGAAATTTGAATAGTTACTGAAAGAAAAAATTGTGCTACAGTAATCCAAAAGATTTGAGTTACCTGTAATACTGCTCATGATGAAAAGTTTCACTTCTTTTTTCTTGATAACAGCACGGGATTTTGCAAAATGGGAGGATTTCTGAAATGTAATCTATTTTAAAGATTCTAGTTAAAAAATCATTCCTAATTCTGAAAATCATTCCTAATTCTGAAAATTTCAAAAAAAATCCTAAAAGACCCAAGAATACAAAACCCTGAAATTCCAAATTTTCAGAAATCCAATACTCTCAGAATTCCTGATTTACACAATTTTAGAATATCAAAATTTCAGAATCAACAATAGAAAAAAATCACTCAACACTGGAAAAATTTCATTTTGTTATCAAACTTTTGAAACGATGAAATTTTTTTGAAACTTTTCAAATTCCCCGCTAACTCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAATAACAATAAGCCAAAATCAAATAAATGCACACAATTGCCAAGAACAGCCCAGCGATTCCGAAAAGTACACCAATGAAAATTTCACTGAAAAAAATGTTGGAATCAATTTACGCTCAAATTTTGGTTTCAACCGTTTCCCCGAATCCGACCTTTTGAACCTTGGGACGACTCCATTTTTAGAATTTCGATATAATTGAGTTTCGTTGAAAAATGTGGCGATTCCAGCAAAAAGTCCCGGCAAAAATTGAATGGCTATGGCAATTCGGAGGCGCGTGGATGTCCACATCTGAAAATGGAGTAGCTGGAAGGGTTACTGTAGGATTCATAAAGACTAATGTTGTATGATTACTGTAGTTCAGTGTTACTATAGTGTAAGTGGGAATTACTGAAGTTGAATCATCAATTATTGCAATTCAATTTAA</canonical>
            <polymorphic>ATCTGAGAATCTTACCTGATAGCATTATAGCATAAATAAAATGTATCCAGCGGGAAATTCAATAGTGACGTTGCATAAATAATCACCAGGACCAGAATAGAAATTTGAATAGTTACTGAAAGAAAAAATTGTGCTACAGTAATCCAAAAGATTTGAGTTACCTGTAATACTGCTCATGATGAAAAGTTTCACTTCTTTTTTCTTGATAACAGCACGGGATTTTGCAAAATGGGAGGATTTCTGAAATGTAATCTATTTTAAAGATTCTAGTTAAAAAATCATTCCTAATTCTGAAAATCATTCCTAATTCTGAAAATTTCAAAAAAAATCCTAAAAGACCCAAGAATACAAAACCCTGAAATTCCAAATTTTCAGAAATCCAATACTCTCAGAATTCCTGATTTACACAATTTTAGAATATCAAAATTTCAGAATCAACAATAGAAAAAAATCACTCAACACTGGAAAAATTTCATTTTGTTATCAAACTTTTGAAACGRTGAAATTTTTTTGAAACTTTTCAAATTCCCCGCTAACTCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAATAACAATAAGCCAAAATCAAATAAATGCACACAATTGCCAAGAACAGCCCAGCGATTCCGAAAAGTACACCAATGAAAATTTCACTGAAAAAAATGTTGGAATCAATTTACGCTCAAATTTTGGTTTCAACCGTTTCCCCGAATCCGACCTTTTGAACCTTGGGACGACTCCATTTTTAGAATTTCGATATAATTGAGTTTCGTTGAAAAATGTGGCGATTCCAGCAAAAAGTCCCGGCAAAAATTGAATGGCTATGGCAATTCGGAGGCGCGTGGATGTCCACATCTGAAAATGGAGTAGCTGGAAGGGTTACTGTAGGATTCATAAAGACTAATGTTGTATGATTACTGTAGTTCAGTGTTACTATAGTGTAAGTGGGAATTACTGAAGTTGAATCATCAATTATTGCAATTCAATTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAAATCCAATACTCTCAG</pcr_primer_p1>
		<pcr_primer_p2>CAATTGTGTGCATTTATTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAAATCCAATACTCTCAGAATTCCTGATTTACACAATTTTAGAATATCAAAATTTCAGAATCAACAATAGAAAAAAATCACTCAACACTGGAAAAATTTCATTTTGTTATCAAACTTTTGAAACGATGAAATTTTTTTGAAACTTTTCAAATTCCCCGCTAACTCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAATAACAATAAGCCAAAATCAAATAAATGCACACAATTG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAAATCCAATACTCTCAGAATTCCTGATTTACACAATTTTAGAATATCAAAATTTCAGAATCAACAATAGAAAAAAATCACTCAACACTGGAAAAATTTCATTTTGTTATCAAACTTTTGAAACGRTGAAATTTTTTTGAAACTTTTCAAATTCCCCGCTAACTCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAATAACAATAAGCCAAAATCAAATAAATGCACACAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23129</snp_id>
        <super_contig>c014200791.Contig3</super_contig>
        <contig_pos>13948</contig_pos>
        <strand>+</strand>
        <context>CTTTTGAAAC[A/G]RTGAAATTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATCACTCAACACTGGAAAAATTTCATTTTGTTATCAAACTTTTGAAAC</left_flank>
        <right_flank>ATGAAATTTTTTTGAAACTTTTCAAATTCCCCGCTAACTCACAATAGCAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCTGAGAATCTTACCTGATAGCATTATAGCATAAATAAAATGTATCCAGCGGGAAATTCAATAGTGACGTTGCATAAATAATCACCAGGACCAGAATAGAAATTTGAATAGTTACTGAAAGAAAAAATTGTGCTACAGTAATCCAAAAGATTTGAGTTACCTGTAATACTGCTCATGATGAAAAGTTTCACTTCTTTTTTCTTGATAACAGCACGGGATTTTGCAAAATGGGAGGATTTCTGAAATGTAATCTATTTTAAAGATTCTAGTTAAAAAATCATTCCTAATTCTGAAAATCATTCCTAATTCTGAAAATTTCAAAAAAAATCCTAAAAGACCCAAGAATACAAAACCCTGAAATTCCAAATTTTCAGAAATCCAATACTCTCAGAATTCCTGATTTACACAATTTTAGAATATCAAAATTTCAGAATCAACAATAGAAAAAAATCACTCAACACTGGAAAAATTTCATTTTGTTATCAAACTTTTGAAACGATGAAATTTTTTTGAAACTTTTCAAATTCCCCGCTAACTCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAATAACAATAAGCCAAAATCAAATAAATGCACACAATTGCCAAGAACAGCCCAGCGATTCCGAAAAGTACACCAATGAAAATTTCACTGAAAAAAATGTTGGAATCAATTTACGCTCAAATTTTGGTTTCAACCGTTTCCCCGAATCCGACCTTTTGAACCTTGGGACGACTCCATTTTTAGAATTTCGATATAATTGAGTTTCGTTGAAAAATGTGGCGATTCCAGCAAAAAGTCCCGGCAAAAATTGAATGGCTATGGCAATTCGGAGGCGCGTGGATGTCCACATCTGAAAATGGAGTAGCTGGAAGGGTTACTGTAGGATTCATAAAGACTAATGTTGTATGATTACTGTAGTTCAGTGTTACTATAGTGTAAGTGGGAATTACTGAAGTTGAATCATCAATTATTGCAATTCAATTTA</canonical>
            <polymorphic>CATCTGAGAATCTTACCTGATAGCATTATAGCATAAATAAAATGTATCCAGCGGGAAATTCAATAGTGACGTTGCATAAATAATCACCAGGACCAGAATAGAAATTTGAATAGTTACTGAAAGAAAAAATTGTGCTACAGTAATCCAAAAGATTTGAGTTACCTGTAATACTGCTCATGATGAAAAGTTTCACTTCTTTTTTCTTGATAACAGCACGGGATTTTGCAAAATGGGAGGATTTCTGAAATGTAATCTATTTTAAAGATTCTAGTTAAAAAATCATTCCTAATTCTGAAAATCATTCCTAATTCTGAAAATTTCAAAAAAAATCCTAAAAGACCCAAGAATACAAAACCCTGAAATTCCAAATTTTCAGAAATCCAATACTCTCAGAATTCCTGATTTACACAATTTTAGAATATCAAAATTTCAGAATCAACAATAGAAAAAAATCACTCAACACTGGAAAAATTTCATTTTGTTATCAAACTTTTGAAACRATGAAATTTTTTTGAAACTTTTCAAATTCCCCGCTAACTCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAATAACAATAAGCCAAAATCAAATAAATGCACACAATTGCCAAGAACAGCCCAGCGATTCCGAAAAGTACACCAATGAAAATTTCACTGAAAAAAATGTTGGAATCAATTTACGCTCAAATTTTGGTTTCAACCGTTTCCCCGAATCCGACCTTTTGAACCTTGGGACGACTCCATTTTTAGAATTTCGATATAATTGAGTTTCGTTGAAAAATGTGGCGATTCCAGCAAAAAGTCCCGGCAAAAATTGAATGGCTATGGCAATTCGGAGGCGCGTGGATGTCCACATCTGAAAATGGAGTAGCTGGAAGGGTTACTGTAGGATTCATAAAGACTAATGTTGTATGATTACTGTAGTTCAGTGTTACTATAGTGTAAGTGGGAATTACTGAAGTTGAATCATCAATTATTGCAATTCAATTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAAATCCAATACTCTCAG</pcr_primer_p1>
		<pcr_primer_p2>CAATTGTGTGCATTTATTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAAATCCAATACTCTCAGAATTCCTGATTTACACAATTTTAGAATATCAAAATTTCAGAATCAACAATAGAAAAAAATCACTCAACACTGGAAAAATTTCATTTTGTTATCAAACTTTTGAAACGATGAAATTTTTTTGAAACTTTTCAAATTCCCCGCTAACTCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAATAACAATAAGCCAAAATCAAATAAATGCACACAATTG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAAATCCAATACTCTCAGAATTCCTGATTTACACAATTTTAGAATATCAAAATTTCAGAATCAACAATAGAAAAAAATCACTCAACACTGGAAAAATTTCATTTTGTTATCAAACTTTTGAAACRATGAAATTTTTTTGAAACTTTTCAAATTCCCCGCTAACTCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAATAACAATAAGCCAAAATCAAATAAATGCACACAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23130</snp_id>
        <super_contig>c014200791.Contig3</super_contig>
        <contig_pos>13922</contig_pos>
        <strand>+</strand>
        <context>TGGAAAAATT[C/T]CATTTTGTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATTTCAGAATCAACAATAGAAAAAAATCACTCAACACTGGAAAAATT</left_flank>
        <right_flank>CATTTTGTTATCAAACTTTTGAAACGATGAAATTTTTTTGAAACTTTTCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTCTAAAACTTTCAGAATTTAGCATCTGAGAATCTTACCTGATAGCATTATAGCATAAATAAAATGTATCCAGCGGGAAATTCAATAGTGACGTTGCATAAATAATCACCAGGACCAGAATAGAAATTTGAATAGTTACTGAAAGAAAAAATTGTGCTACAGTAATCCAAAAGATTTGAGTTACCTGTAATACTGCTCATGATGAAAAGTTTCACTTCTTTTTTCTTGATAACAGCACGGGATTTTGCAAAATGGGAGGATTTCTGAAATGTAATCTATTTTAAAGATTCTAGTTAAAAAATCATTCCTAATTCTGAAAATCATTCCTAATTCTGAAAATTTCAAAAAAAATCCTAAAAGACCCAAGAATACAAAACCCTGAAATTCCAAATTTTCAGAAATCCAATACTCTCAGAATTCCTGATTTACACAATTTTAGAATATCAAAATTTCAGAATCAACAATAGAAAAAAATCACTCAACACTGGAAAAATTTCATTTTGTTATCAAACTTTTGAAACGATGAAATTTTTTTGAAACTTTTCAAATTCCCCGCTAACTCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAATAACAATAAGCCAAAATCAAATAAATGCACACAATTGCCAAGAACAGCCCAGCGATTCCGAAAAGTACACCAATGAAAATTTCACTGAAAAAAATGTTGGAATCAATTTACGCTCAAATTTTGGTTTCAACCGTTTCCCCGAATCCGACCTTTTGAACCTTGGGACGACTCCATTTTTAGAATTTCGATATAATTGAGTTTCGTTGAAAAATGTGGCGATTCCAGCAAAAAGTCCCGGCAAAAATTGAATGGCTATGGCAATTCGGAGGCGCGTGGATGTCCACATCTGAAAATGGAGTAGCTGGAAGGGTTACTGTAGGATTCATAAAGACTAATGTTGTATGATTACTGTAGTTCAGTGTTACTATAGTGTAAGTGGGAATTACTGAAGTTGA</canonical>
            <polymorphic>AATTTTCTAAAACTTTCAGAATTTAGCATCTGAGAATCTTACCTGATAGCATTATAGCATAAATAAAATGTATCCAGCGGGAAATTCAATAGTGACGTTGCATAAATAATCACCAGGACCAGAATAGAAATTTGAATAGTTACTGAAAGAAAAAATTGTGCTACAGTAATCCAAAAGATTTGAGTTACCTGTAATACTGCTCATGATGAAAAGTTTCACTTCTTTTTTCTTGATAACAGCACGGGATTTTGCAAAATGGGAGGATTTCTGAAATGTAATCTATTTTAAAGATTCTAGTTAAAAAATCATTCCTAATTCTGAAAATCATTCCTAATTCTGAAAATTTCAAAAAAAATCCTAAAAGACCCAAGAATACAAAACCCTGAAATTCCAAATTTTCAGAAATCCAATACTCTCAGAATTCCTGATTTACACAATTTTAGAATATCAAAATTTCAGAATCAACAATAGAAAAAAATCACTCAACACTGGAAAAATTYCATTTTGTTATCAAACTTTTGAAACGATGAAATTTTTTTGAAACTTTTCAAATTCCCCGCTAACTCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAATAACAATAAGCCAAAATCAAATAAATGCACACAATTGCCAAGAACAGCCCAGCGATTCCGAAAAGTACACCAATGAAAATTTCACTGAAAAAAATGTTGGAATCAATTTACGCTCAAATTTTGGTTTCAACCGTTTCCCCGAATCCGACCTTTTGAACCTTGGGACGACTCCATTTTTAGAATTTCGATATAATTGAGTTTCGTTGAAAAATGTGGCGATTCCAGCAAAAAGTCCCGGCAAAAATTGAATGGCTATGGCAATTCGGAGGCGCGTGGATGTCCACATCTGAAAATGGAGTAGCTGGAAGGGTTACTGTAGGATTCATAAAGACTAATGTTGTATGATTACTGTAGTTCAGTGTTACTATAGTGTAAGTGGGAATTACTGAAGTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>215 213 132 64 63 46 45 44 39 35 32 26 20 19 7</canonical_bands>
                <polymorphic_bands>215 213 132 79 64 63 46 45 39 32 26 20 19 7</polymorphic_bands>
            </assay>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>456 284 212 48</canonical_bands>
                <polymorphic_bands>456 332 212</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAAATCCAATACTCTCAG</pcr_primer_p1>
		<pcr_primer_p2>CAATTGTGTGCATTTATTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAAATCCAATACTCTCAGAATTCCTGATTTACACAATTTTAGAATATCAAAATTTCAGAATCAACAATAGAAAAAAATCACTCAACACTGGAAAAATTTCATTTTGTTATCAAACTTTTGAAACGATGAAATTTTTTTGAAACTTTTCAAATTCCCCGCTAACTCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAATAACAATAAGCCAAAATCAAATAAATGCACACAATTG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAAATCCAATACTCTCAGAATTCCTGATTTACACAATTTTAGAATATCAAAATTTCAGAATCAACAATAGAAAAAAATCACTCAACACTGGAAAAATTYCATTTTGTTATCAAACTTTTGAAACGATGAAATTTTTTTGAAACTTTTCAAATTCCCCGCTAACTCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAATAACAATAAGCCAAAATCAAATAAATGCACACAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23131</snp_id>
        <super_contig>c014200791.Contig3</super_contig>
        <contig_pos>13890</contig_pos>
        <strand>+</strand>
        <context>AGAATCAACA[A/C]TAGAAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAATTCCTGATTTACACAATTTTAGAATATCAAAATTTCAGAATCAACA</left_flank>
        <right_flank>TAGAAAAAAATCACTCAACACTGGAAAAATTTCATTTTGTTATCAAACTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAACCAACATCTTAAAATTTCGAAAACCAAAATTTTCTAAAACTTTCAGAATTTAGCATCTGAGAATCTTACCTGATAGCATTATAGCATAAATAAAATGTATCCAGCGGGAAATTCAATAGTGACGTTGCATAAATAATCACCAGGACCAGAATAGAAATTTGAATAGTTACTGAAAGAAAAAATTGTGCTACAGTAATCCAAAAGATTTGAGTTACCTGTAATACTGCTCATGATGAAAAGTTTCACTTCTTTTTTCTTGATAACAGCACGGGATTTTGCAAAATGGGAGGATTTCTGAAATGTAATCTATTTTAAAGATTCTAGTTAAAAAATCATTCCTAATTCTGAAAATCATTCCTAATTCTGAAAATTTCAAAAAAAATCCTAAAAGACCCAAGAATACAAAACCCTGAAATTCCAAATTTTCAGAAATCCAATACTCTCAGAATTCCTGATTTACACAATTTTAGAATATCAAAATTTCAGAATCAACAATAGAAAAAAATCACTCAACACTGGAAAAATTTCATTTTGTTATCAAACTTTTGAAACGATGAAATTTTTTTGAAACTTTTCAAATTCCCCGCTAACTCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAATAACAATAAGCCAAAATCAAATAAATGCACACAATTGCCAAGAACAGCCCAGCGATTCCGAAAAGTACACCAATGAAAATTTCACTGAAAAAAATGTTGGAATCAATTTACGCTCAAATTTTGGTTTCAACCGTTTCCCCGAATCCGACCTTTTGAACCTTGGGACGACTCCATTTTTAGAATTTCGATATAATTGAGTTTCGTTGAAAAATGTGGCGATTCCAGCAAAAAGTCCCGGCAAAAATTGAATGGCTATGGCAATTCGGAGGCGCGTGGATGTCCACATCTGAAAATGGAGTAGCTGGAAGGGTTACTGTAGGATTCATAAAGACTAATGTTGTATGATTACTGTAGTTCAGTGTT</canonical>
            <polymorphic>TGGAACCAACATCTTAAAATTTCGAAAACCAAAATTTTCTAAAACTTTCAGAATTTAGCATCTGAGAATCTTACCTGATAGCATTATAGCATAAATAAAATGTATCCAGCGGGAAATTCAATAGTGACGTTGCATAAATAATCACCAGGACCAGAATAGAAATTTGAATAGTTACTGAAAGAAAAAATTGTGCTACAGTAATCCAAAAGATTTGAGTTACCTGTAATACTGCTCATGATGAAAAGTTTCACTTCTTTTTTCTTGATAACAGCACGGGATTTTGCAAAATGGGAGGATTTCTGAAATGTAATCTATTTTAAAGATTCTAGTTAAAAAATCATTCCTAATTCTGAAAATCATTCCTAATTCTGAAAATTTCAAAAAAAATCCTAAAAGACCCAAGAATACAAAACCCTGAAATTCCAAATTTTCAGAAATCCAATACTCTCAGAATTCCTGATTTACACAATTTTAGAATATCAAAATTTCAGAATCAACAMTAGAAAAAAATCACTCAACACTGGAAAAATTTCATTTTGTTATCAAACTTTTGAAACGATGAAATTTTTTTGAAACTTTTCAAATTCCCCGCTAACTCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAATAACAATAAGCCAAAATCAAATAAATGCACACAATTGCCAAGAACAGCCCAGCGATTCCGAAAAGTACACCAATGAAAATTTCACTGAAAAAAATGTTGGAATCAATTTACGCTCAAATTTTGGTTTCAACCGTTTCCCCGAATCCGACCTTTTGAACCTTGGGACGACTCCATTTTTAGAATTTCGATATAATTGAGTTTCGTTGAAAAATGTGGCGATTCCAGCAAAAAGTCCCGGCAAAAATTGAATGGCTATGGCAATTCGGAGGCGCGTGGATGTCCACATCTGAAAATGGAGTAGCTGGAAGGGTTACTGTAGGATTCATAAAGACTAATGTTGTATGATTACTGTAGTTCAGTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAAATCCAATACTCTCAG</pcr_primer_p1>
		<pcr_primer_p2>CAATTGTGTGCATTTATTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAAATCCAATACTCTCAGAATTCCTGATTTACACAATTTTAGAATATCAAAATTTCAGAATCAACAATAGAAAAAAATCACTCAACACTGGAAAAATTTCATTTTGTTATCAAACTTTTGAAACGATGAAATTTTTTTGAAACTTTTCAAATTCCCCGCTAACTCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAATAACAATAAGCCAAAATCAAATAAATGCACACAATTG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAAATCCAATACTCTCAGAATTCCTGATTTACACAATTTTAGAATATCAAAATTTCAGAATCAACAMTAGAAAAAAATCACTCAACACTGGAAAAATTTCATTTTGTTATCAAACTTTTGAAACGATGAAATTTTTTTGAAACTTTTCAAATTCCCCGCTAACTCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAATAACAATAAGCCAAAATCAAATAAATGCACACAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23132</snp_id>
        <super_contig>c014200791.Contig3</super_contig>
        <contig_pos>46351</contig_pos>
        <strand>+</strand>
        <context>TGTGTCCCTT[C/T]TGAATCAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTGCAACTAGTTTTCTGTCATATGGTCAACATACGTGTGTGTGTCCCTT</left_flank>
        <right_flank>TGAATCAGAATACCATGTGTTTTTGGGAAAAATGACAACAGACGTACATA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCACTTCTGTATCTCGGTTCCTGTAATAGATTTCCATAAGTGGCCAACTGATAATATATTTTTGATATTATGATAAATATTTTGTCAGTTGACAACTTTTCTTTTCAGTATCTGTTACAGTTACCGAGATGTACAAAATTACGGTAGGTCAACTTCTATTACAGGTTTTACGGTAGGTGGGAGAACTGGAAAACCAAAATTAGATTTCTGTTTCATAGTATTGGTAAATTAATTTCAAAATTCTAATAAACAGTTCGGGAAAGAGTCGAAGCGGGACTATATTTAAATATGTAAACAATTTCAGGTTCATTGAAAATTTCCAGTCACTATTCCCTTCCAAAAATATTCCTTTCCTAATTTCCGAATTCAAAAAAATATGTATTTGAACATGTTGAGTACACATGTCTTCTTCTTCTTCTTGCCATCCGAATTGAATTTTTCGAAAAAGCTGCAACTAGTTTTCTGTCATATGGTCAACATACGTGTGTGTGTCCCTTTTGAATCAGAATACCATGTGTTTTTGGGAAAAATGACAACAGACGTACATACGGCCAACGAAGTCTTTTACATATGTACCGTAGATGCAGCTGTTGTTAACACAACACATGGACACCGGCAGGGAATATCGAAAAAAAATCTTTGAAATGGGGATAATTGGATGGGATACCGTAACTTTGAGCCTATTTATCTCACTTCCTGTCTAAAATATAAAAAAGTGGTCATTATTAAATTGTTCCCCATATAATCAAAAACATTCTATCAGTTGACCCATTTTTGATATCTTTCACAAAAATCGATCAGAATGAAAGATGACTAAGAGGGTTCCCTTCTATTGCAAGTTTTTCGGTAAATGAGTGTTTCACAGTTTTAACTGTTTTTTTCCCATTTTCGAAGTCTAGTTTTGAAATTTTGAAAGTTTTGAAAATTTTCAATGTTTCAAAAACTTACCAAAATTTCTAAAATTTCTAAATTCCTTGATTTATGTTAGTTCAAATATT</canonical>
            <polymorphic>GAGCACTTCTGTATCTCGGTTCCTGTAATAGATTTCCATAAGTGGCCAACTGATAATATATTTTTGATATTATGATAAATATTTTGTCAGTTGACAACTTTTCTTTTCAGTATCTGTTACAGTTACCGAGATGTACAAAATTACGGTAGGTCAACTTCTATTACAGGTTTTACGGTAGGTGGGAGAACTGGAAAACCAAAATTAGATTTCTGTTTCATAGTATTGGTAAATTAATTTCAAAATTCTAATAAACAGTTCGGGAAAGAGTCGAAGCGGGACTATATTTAAATATGTAAACAATTTCAGGTTCATTGAAAATTTCCAGTCACTATTCCCTTCCAAAAATATTCCTTTCCTAATTTCCGAATTCAAAAAAATATGTATTTGAACATGTTGAGTACACATGTCTTCTTCTTCTTCTTGCCATCCGAATTGAATTTTTCGAAAAAGCTGCAACTAGTTTTCTGTCATATGGTCAACATACGTGTGTGTGTCCCTTYTGAATCAGAATACCATGTGTTTTTGGGAAAAATGACAACAGACGTACATACGGCCAACGAAGTCTTTTACATATGTACCGTAGATGCAGCTGTTGTTAACACAACACATGGACACCGGCAGGGAATATCGAAAAAAAATCTTTGAAATGGGGATAATTGGATGGGATACCGTAACTTTGAGCCTATTTATCTCACTTCCTGTCTAAAATATAAAAAAGTGGTCATTATTAAATTGTTCCCCATATAATCAAAAACATTCTATCAGTTGACCCATTTTTGATATCTTTCACAAAAATCGATCAGAATGAAAGATGACTAAGAGGGTTCCCTTCTATTGCAAGTTTTTCGGTAAATGAGTGTTTCACAGTTTTAACTGTTTTTTTCCCATTTTCGAAGTCTAGTTTTGAAATTTTGAAAGTTTTGAAAATTTTCAATGTTTCAAAAACTTACCAAAATTTCTAAAATTTCTAAATTCCTTGATTTATGTTAGTTCAAATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCTAATTTCCGAATTCAA</pcr_primer_p1>
		<pcr_primer_p2>TGTTAACAACAGCTGCATCTAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCCTAATTTCCGAATTCAAAAAAATATGTATTTGAACATGTTGAGTACACATGTCTTCTTCTTCTTCTTGCCATCCGAATTGAATTTTTCGAAAAAGCTGCAACTAGTTTTCTGTCATATGGTCAACATACGTGTGTGTGTCCCTTTTGAATCAGAATACCATGTGTTTTTGGGAAAAATGACAACAGACGTACATACGGCCAACGAAGTCTTTTACATATGTACCGTAGATGCAGCTGTTGTTAACA</canonical_amplicon>
		<polymorphic_amplicon>TTCCTAATTTCCGAATTCAAAAAAATATGTATTTGAACATGTTGAGTACACATGTCTTCTTCTTCTTCTTGCCATCCGAATTGAATTTTTCGAAAAAGCTGCAACTAGTTTTCTGTCATATGGTCAACATACGTGTGTGTGTCCCTTYTGAATCAGAATACCATGTGTTTTTGGGAAAAATGACAACAGACGTACATACGGCCAACGAAGTCTTTTACATATGTACCGTAGATGCAGCTGTTGTTAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23133</snp_id>
        <super_contig>c014200791.Contig3</super_contig>
        <contig_pos>49978</contig_pos>
        <strand>+</strand>
        <context>AGGGAGTAGA[C/G]AAGATTTGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCAGGACCAGAAGACAATAACAAAAATGGATCAGGTGAAAAGGGAGTAGA</left_flank>
        <right_flank>AAGATTTGTTTATCTTATCCAGGTCATTGTGTAATGTATACTTTGAAGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGTTCAGGTGGAGTTTGGCAAGCTCGCTCTAATGCTAAAAATCTCAAATTTGACTGTTTTTTGGGGTTAAGAAGGATTTTTCGCTATTTTTGGAGCGGAATAATAGGTTTTTAAGGGCAAGGAAGCGTTTGGAGATGGAAAAACGAGTTATACTTGTGTTTAAAGTACTGTTTCTGACTGTTCTCAGGTTAAATTTTAACATTTTTCAGACTAAATTTGTATTGCATTCCAACTTTCCCAAGTTTTCAACATTTTTTCTTCTTCTTCCTTTATTCTGAATTCAAATCTCAATCGTTAAAGAAACTTTTACGATTACCACCTGTTTCCATTTCCAAGGACAGGATCTTCATTCTCTCGATTTGCACTTCAGATAGGCACACAAAGACAGTCATAGGGACCCCCAAACACACCTAATTTATTAGGTCACCTCTTGATTTTTATCTAGTTCTCAGGACCAGAAGACAATAACAAAAATGGATCAGGTGAAAAGGGAGTAGACAAGATTTGTTTATCTTATCCAGGTCATTGTGTAATGTATACTTTGAAGAGTATTAATGTAAACTTTGTGTTAGATGTGCAGGTATTATAGATACAGTAATTAAATACTCTATACGCATCTCAAACATATGGTGGTACTCATCAGTCAGGTTAAAAGGCGAGGAAAAAGTGATGAAAAAGAGATAATTATCAGAGAATTTCGGTGAAATCTTCTTTGAAGTGTCAATCAACTTGGTTGGGTATACGTAATCTACAGTATGCGGCAATTTTCGGCAATGTTTGGAGTAAAAAAATAATGGGGTAAGTTTTAGAAATTCCAAAAAAAGTATGTATGACCGATCAATCCTATTGTTTTATCAGGTGTTATTGGGCGTTCAATACAATAATTTAGATAATTTTTAAAAATCAACTTTTTGAAACAGTGAAAAAATTTACCAAATTTATATATTAATTTTTGTTTGTGCTGTTTAAAATGTCACATTTTTGTTTAGCTAGCTTTGT</canonical>
            <polymorphic>AGGTTCAGGTGGAGTTTGGCAAGCTCGCTCTAATGCTAAAAATCTCAAATTTGACTGTTTTTTGGGGTTAAGAAGGATTTTTCGCTATTTTTGGAGCGGAATAATAGGTTTTTAAGGGCAAGGAAGCGTTTGGAGATGGAAAAACGAGTTATACTTGTGTTTAAAGTACTGTTTCTGACTGTTCTCAGGTTAAATTTTAACATTTTTCAGACTAAATTTGTATTGCATTCCAACTTTCCCAAGTTTTCAACATTTTTTCTTCTTCTTCCTTTATTCTGAATTCAAATCTCAATCGTTAAAGAAACTTTTACGATTACCACCTGTTTCCATTTCCAAGGACAGGATCTTCATTCTCTCGATTTGCACTTCAGATAGGCACACAAAGACAGTCATAGGGACCCCCAAACACACCTAATTTATTAGGTCACCTCTTGATTTTTATCTAGTTCTCAGGACCAGAAGACAATAACAAAAATGGATCAGGTGAAAAGGGAGTAGASAAGATTTGTTTATCTTATCCAGGTCATTGTGTAATGTATACTTTGAAGAGTATTAATGTAAACTTTGTGTTAGATGTGCAGGTATTATAGATACAGTAATTAAATACTCTATACGCATCTCAAACATATGGTGGTACTCATCAGTCAGGTTAAAAGGCGAGGAAAAAGTGATGAAAAAGAGATAATTATCAGAGAATTTCGGTGAAATCTTCTTTGAAGTGTCAATCAACTTGGTTGGGTATACGTAATCTACAGTATGCGGCAATTTTCGGCAATGTTTGGAGTAAAAAAATAATGGGGTAAGTTTTAGAAATTCCAAAAAAAGTATGTATGACCGATCAATCCTATTGTTTTATCAGGTGTTATTGGGCGTTCAATACAATAATTTAGATAATTTTTAAAAATCAACTTTTTGAAACAGTGAAAAAATTTACCAAATTTATATATTAATTTTTGTTTGTGCTGTTTAAAATGTCACATTTTTGTTTAGCTAGCTTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>496 260 203 41</canonical_bands>
                <polymorphic_bands>537 260 203</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>497 259 181 41 22</canonical_bands>
                <polymorphic_bands>538 259 181 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGATCTTCATTCTCTCGATTT</pcr_primer_p1>
		<pcr_primer_p2>TAATACCTGCACATCTAACACAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGGATCTTCATTCTCTCGATTTGCACTTCAGATAGGCACACAAAGACAGTCATAGGGACCCCCAAACACACCTAATTTATTAGGTCACCTCTTGATTTTTATCTAGTTCTCAGGACCAGAAGACAATAACAAAAATGGATCAGGTGAAAAGGGAGTAGACAAGATTTGTTTATCTTATCCAGGTCATTGTGTAATGTATACTTTGAAGAGTATTAATGTAAACTTTGTGTTAGATGTGCAGGTATTA</canonical_amplicon>
		<polymorphic_amplicon>AGGATCTTCATTCTCTCGATTTGCACTTCAGATAGGCACACAAAGACAGTCATAGGGACCCCCAAACACACCTAATTTATTAGGTCACCTCTTGATTTTTATCTAGTTCTCAGGACCAGAAGACAATAACAAAAATGGATCAGGTGAAAAGGGAGTAGASAAGATTTGTTTATCTTATCCAGGTCATTGTGTAATGTATACTTTGAAGAGTATTAATGTAAACTTTGTGTTAGATGTGCAGGTATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23134</snp_id>
        <super_contig>c014200791.Contig3</super_contig>
        <contig_pos>129090</contig_pos>
        <strand>+</strand>
        <context>TCATTTCTTT[C/T]CCATCAGAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAAAATAAAATTTCCAGAATCATCGAGATTTCGAAACATCATTTCTTT</left_flank>
        <right_flank>CCATCAGAGTCTGAAAAACATAAAGATGGGCGGCGGTTTTTTTTCTGAAT</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGATTTGGTAAAAAATCTGGTAAATATTTAGGTGAAATGCTATTTTCAGATGTTGGTGCCAGATACCCAACATCTGAAAATTTTAGTTTCAAAAATTAATCGAGATTTTGGAACAGGAATTTCTCCACATCAAAATCTGAAAATTGTAAAATTGAAGTGTTTTTTTTTCTGGAAAATAAATTATTGATACAAAAATTTTGAATTCTATTTCTGAAATAATTAGTTTTTTTAATGAAAATTTTTTTTTGACAATTTCAAAACTGCAATTTTTTGTAAAAATCTGAAAATTTGAATGCTGGGTGGTTTTTTTTCTTAAACAATACAACTTTTCTTAATTCGAATTTCCATTTTCTTACAGAATAAAAATTCAGAAACTGGTTTAATTGGAAACTTTGAAAATTCAGGAAATTCTAATAAGCTTGACGTATCCAAAGCTTTTGAAATGACTGAAAAATAAAATTTCCAGAATCATCGAGATTTCGAAACATCATTTCTTTTCCATCAGAGTCTGAAAAACATAAAGATGGGCGGCGGTTTTTTTTCTGAATAATACATTATTTTTCTATAGTGATTCAATACCATACTTGTCATTGAACGGGCCGAGCCGGGTCAGCTTTTGAAATTTCGAAATTCCAAGGTTTTTTTTGAAAGTTTTTGAAGTTTTCGCTAAATTTTCAATAAATATCGAAGTTTCGATACTTTTTTAAGAACGGATAATCCCAGGGAGTTTTTTTTGAGACAAAATTCGACAAATTTTTCTTTAAAACTTTTAAAAAATCAGCTACCCAGGCTGACCGGGCCGGGCCGGAATTTGACAAGTATGTTCAAGATATTTTACAGCAAAAAAAAATTGCATACAGACCTACAATTGATGAAATGTTAAAAATTCACAAATTAATCGAGATTTCGAAACATAGATTTTTTGTCGGCAAAACTCTGAAAACTTGAAATTAGGACTTTTTTCTAACAAATACATTTTTGATTAAACTTTTTTATCA</canonical>
            <polymorphic>TAGGATTTGGTAAAAAATCTGGTAAATATTTAGGTGAAATGCTATTTTCAGATGTTGGTGCCAGATACCCAACATCTGAAAATTTTAGTTTCAAAAATTAATCGAGATTTTGGAACAGGAATTTCTCCACATCAAAATCTGAAAATTGTAAAATTGAAGTGTTTTTTTTTCTGGAAAATAAATTATTGATACAAAAATTTTGAATTCTATTTCTGAAATAATTAGTTTTTTTAATGAAAATTTTTTTTTGACAATTTCAAAACTGCAATTTTTTGTAAAAATCTGAAAATTTGAATGCTGGGTGGTTTTTTTTCTTAAACAATACAACTTTTCTTAATTCGAATTTCCATTTTCTTACAGAATAAAAATTCAGAAACTGGTTTAATTGGAAACTTTGAAAATTCAGGAAATTCTAATAAGCTTGACGTATCCAAAGCTTTTGAAATGACTGAAAAATAAAATTTCCAGAATCATCGAGATTTCGAAACATCATTTCTTTYCCATCAGAGTCTGAAAAACATAAAGATGGGCGGCGGTTTTTTTTCTGAATAATACATTATTTTTCTATAGTGATTCAATACCATACTTGTCATTGAACGGGCCGAGCCGGGTCAGCTTTTGAAATTTCGAAATTCCAAGGTTTTTTTTGAAAGTTTTTGAAGTTTTCGCTAAATTTTCAATAAATATCGAAGTTTCGATACTTTTTTAAGAACGGATAATCCCAGGGAGTTTTTTTTGAGACAAAATTCGACAAATTTTTCTTTAAAACTTTTAAAAAATCAGCTACCCAGGCTGACCGGGCCGGGCCGGAATTTGACAAGTATGTTCAAGATATTTTACAGCAAAAAAAAATTGCATACAGACCTACAATTGATGAAATGTTAAAAATTCACAAATTAATCGAGATTTCGAAACATAGATTTTTTGTCGGCAAAACTCTGAAAACTTGAAATTAGGACTTTTTTCTAACAAATACATTTTTGATTAAACTTTTTTATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAATAAAAATTCAGAAACTGG</pcr_primer_p1>
		<pcr_primer_p2>CAATGACAAGTATGGTATTGAATC</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>CAGAATAAAAATTCAGAAACTGGTTTAATTGGAAACTTTGAAAATTCAGGAAATTCTAATAAGCTTGACGTATCCAAAGCTTTTGAAATGACTGAAAAATAAAATTTCCAGAATCATCGAGATTTCGAAACATCATTTCTTTTCCATCAGAGTCTGAAAAACATAAAGATGGGCGGCGGTTTTTTTTCTGAATAATACATTATTTTTCTATAGTGATTCAATACCATACTTGTCATTG</canonical_amplicon>
		<polymorphic_amplicon>CAGAATAAAAATTCAGAAACTGGTTTAATTGGAAACTTTGAAAATTCAGGAAATTCTAATAAGCTTGACGTATCCAAAGCTTTTGAAATGACTGAAAAATAAAATTTCCAGAATCATCGAGATTTCGAAACATCATTTCTTTYCCATCAGAGTCTGAAAAACATAAAGATGGGCGGCGGTTTTTTTTCTGAATAATACATTATTTTTCTATAGTGATTCAATACCATACTTGTCATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23135</snp_id>
        <super_contig>c014200791.Contig3</super_contig>
        <contig_pos>129509</contig_pos>
        <strand>+</strand>
        <context>TCGAAACATA[A/G]ATTTTTTGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTGATGAAATGTTAAAAATTCACAAATTAATCGAGATTTCGAAACATA</left_flank>
        <right_flank>ATTTTTTGTCGGCAAAACTCTGAAAACTTGAAATTAGGACTTTTTTCTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTGACGTATCCAAAGCTTTTGAAATGACTGAAAAATAAAATTTCCAGAATCATCGAGATTTCGAAACATCATTTCTTTTCCATCAGAGTCTGAAAAACATAAAGATGGGCGGCGGTTTTTTTTCTGAATAATACATTATTTTTCTATAGTGATTCAATACCATACTTGTCATTGAACGGGCCGAGCCGGGTCAGCTTTTGAAATTTCGAAATTCCAAGGTTTTTTTTGAAAGTTTTTGAAGTTTTCGCTAAATTTTCAATAAATATCGAAGTTTCGATACTTTTTTAAGAACGGATAATCCCAGGGAGTTTTTTTTGAGACAAAATTCGACAAATTTTTCTTTAAAACTTTTAAAAAATCAGCTACCCAGGCTGACCGGGCCGGGCCGGAATTTGACAAGTATGTTCAAGATATTTTACAGCAAAAAAAAATTGCATACAGACCTACAATTGATGAAATGTTAAAAATTCACAAATTAATCGAGATTTCGAAACATAGATTTTTTGTCGGCAAAACTCTGAAAACTTGAAATTAGGACTTTTTTCTAACAAATACATTTTTGATTAAACTTTTTTATCATAATTTCTTTTTCAATAACATTTAAAACATTTTGAAGAGTACTGAACTTCACTTACCAGAAAAATAGTTTCTGAAACTATTTCCAGTTGTTTTTAATTTTTAATTTTTAAATTCAAATTTCGATTTCCAGAACTTTTTGAAAAATTAAATCTGAAAAATATTTTTCGGAGCAAGAGTCTGCATTCTGACGTGACGGTGTACAATGATTTTTGTTTACAGAGCGCGTCGGTATGGCGCCACTTTCACATACAGTACCGGCCACCAGGACATACAGAAACTTTTTTTTCACTATTTTCAGAAGTCTGGAGCTCGGCTTTCAGGTTTCCGGTCATTTAAACAATATTGGATAAAACAAACCTAGATTGGAAGCTTTGGATTCACAGAATTTTTTGAAATTTTCTAGTTTTTCAGATATATAC</canonical>
            <polymorphic>GCTTGACGTATCCAAAGCTTTTGAAATGACTGAAAAATAAAATTTCCAGAATCATCGAGATTTCGAAACATCATTTCTTTTCCATCAGAGTCTGAAAAACATAAAGATGGGCGGCGGTTTTTTTTCTGAATAATACATTATTTTTCTATAGTGATTCAATACCATACTTGTCATTGAACGGGCCGAGCCGGGTCAGCTTTTGAAATTTCGAAATTCCAAGGTTTTTTTTGAAAGTTTTTGAAGTTTTCGCTAAATTTTCAATAAATATCGAAGTTTCGATACTTTTTTAAGAACGGATAATCCCAGGGAGTTTTTTTTGAGACAAAATTCGACAAATTTTTCTTTAAAACTTTTAAAAAATCAGCTACCCAGGCTGACCGGGCCGGGCCGGAATTTGACAAGTATGTTCAAGATATTTTACAGCAAAAAAAAATTGCATACAGACCTACAATTGATGAAATGTTAAAAATTCACAAATTAATCGAGATTTCGAAACATARATTTTTTGTCGGCAAAACTCTGAAAACTTGAAATTAGGACTTTTTTCTAACAAATACATTTTTGATTAAACTTTTTTATCATAATTTCTTTTTCAATAACATTTAAAACATTTTGAAGAGTACTGAACTTCACTTACCAGAAAAATAGTTTCTGAAACTATTTCCAGTTGTTTTTAATTTTTAATTTTTAAATTCAAATTTCGATTTCCAGAACTTTTTGAAAAATTAAATCTGAAAAATATTTTTCGGAGCAAGAGTCTGCATTCTGACGTGACGGTGTACAATGATTTTTGTTTACAGAGCGCGTCGGTATGGCGCCACTTTCACATACAGTACCGGCCACCAGGACATACAGAAACTTTTTTTTCACTATTTTCAGAAGTCTGGAGCTCGGCTTTCAGGTTTCCGGTCATTTAAACAATATTGGATAAAACAAACCTAGATTGGAAGCTTTGGATTCACAGAATTTTTTGAAATTTTCTAGTTTTTCAGATATATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTGCATACAGACCTACAA</pcr_primer_p1>
		<pcr_primer_p2>CAGAAACTATTTTTCTGGTAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTGCATACAGACCTACAATTGATGAAATGTTAAAAATTCACAAATTAATCGAGATTTCGAAACATAGATTTTTTGTCGGCAAAACTCTGAAAACTTGAAATTAGGACTTTTTTCTAACAAATACATTTTTGATTAAACTTTTTTATCATAATTTCTTTTTCAATAACATTTAAAACATTTTGAAGAGTACTGAACTTCACTTACCAGAAAAATAGTTTCTG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTGCATACAGACCTACAATTGATGAAATGTTAAAAATTCACAAATTAATCGAGATTTCGAAACATARATTTTTTGTCGGCAAAACTCTGAAAACTTGAAATTAGGACTTTTTTCTAACAAATACATTTTTGATTAAACTTTTTTATCATAATTTCTTTTTCAATAACATTTAAAACATTTTGAAGAGTACTGAACTTCACTTACCAGAAAAATAGTTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23137</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>20227</contig_pos>
        <strand></strand>
        <context>ATCTCAAAAA[C/G]TCTGAAAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAA</left_flank>
        <right_flank>TCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAATCTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCTTTTCCAGGAATAATCTTAAATTTCTCAAAATTACTTAAAAAAATTTTTTTTTTAATTTCAGATAAAACTCACAAGCCCCTCCTGGATAGGCAGCCAACATCTTCTCCTTAGTATCCAATTCTCTGTATTCCTGGGCTTTCCTGGATATCACAGCGTCAAGCCATTCATCGTATTTTCTGGATGATTTTCTTGGTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAATCTCAAAAAGTTGAAAAAAATCTGTGTGTCCAGATGTCCGCTCTAAAAGTCTTTACCTATTCCATCCTCCTCTTCTTCACCATCATTATCCGTATCGTTCCGTCTTCTTTTTTCAGGTTTCTTTGGAAAAGTCCTCAAATTATCATTCAAAATTTCGTTGGAAACTGAAAAAATGGGAATGTCTGTCTGTGTGTCCGGATGTCCATCTGGTTCCTCGAACTTTGTAATTTCAAAATTCGAAATTCTTGAACAATCTGAAATTGATTTTTTTTTTTGGAAAATTCAAAATAATTCTCAGTACCAATCCCATAACCATCGTCGTCTGGTTCCTCTAGTTTTGGAATTTCCAGCATTTTTTGAAATTTCTGGAAAAAATTTCTAGATTTTCAGACAAATTTTAAACAGAAAAATACTTGAAAATCGATATTTCGACTTGAATTCAAAAAATTGAAAT</canonical>
            <polymorphic>GAGCTTTTCCAGGAATAATCTTAAATTTCTCAAAATTACTTAAAAAAATTTTTTTTTTAATTTCAGATAAAACTCACAAGCCCCTCCTGGATAGGCAGCCAACATCTTCTCCTTAGTATCCAATTCTCTGTATTCCTGGGCTTTCCTGGATATCACAGCGTCAAGCCATTCATCGTATTTTCTGGATGATTTTCTTGGTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAASTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAATCTCAAAAAGTTGAAAAAAATCTGTGTGTCCAGATGTCCGCTCTAAAAGTCTTTACCTATTCCATCCTCCTCTTCTTCACCATCATTATCCGTATCGTTCCGTCTTCTTTTTTCAGGTTTCTTTGGAAAAGTCCTCAAATTATCATTCAAAATTTCGTTGGAAACTGAAAAAATGGGAATGTCTGTCTGTGTGTCCGGATGTCCATCTGGTTCCTCGAACTTTGTAATTTCAAAATTCGAAATTCTTGAACAATCTGAAATTGATTTTTTTTTTTGGAAAATTCAAAATAATTCTCAGTACCAATCCCATAACCATCGTCGTCTGGTTCCTCTAGTTTTGGAATTTCCAGCATTTTTTGAAATTTCTGGAAAAAATTTCTAGATTTTCAGACAAATTTTAAACAGAAAAATACTTGAAAATCGATATTTCGACTTGAATTCAAAAAATTGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATTTTCTGGATGATTTTCTTG</pcr_primer_p1>
		<pcr_primer_p2>CTTTTTGAGATTTGGGAATGT</pcr_primer_p2>
		<pcr_amplicon_size>382</pcr_amplicon_size>
		<canonical_amplicon>GTATTTTCTGGATGATTTTCTTGGTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAATCTCAAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GTATTTTCTGGATGATTTTCTTGGTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAASTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAATCTCAAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23139</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>20291</contig_pos>
        <strand>+</strand>
        <context>AAGTTGAAAA[A/T]AATCTGTGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTAAAAAAACCGAAAAAACCTGACATTCCCAAATCTCAAAAAGTTGAAAA</left_flank>
        <right_flank>AATCTGTGTGTCCAGATGTCCGCTCTAAAAGTCTTTACCTATTCCATCCT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATAAAACTCACAAGCCCCTCCTGGATAGGCAGCCAACATCTTCTCCTTAGTATCCAATTCTCTGTATTCCTGGGCTTTCCTGGATATCACAGCGTCAAGCCATTCATCGTATTTTCTGGATGATTTTCTTGGTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAATCTCAAAAAGTTGAAAAAAATCTGTGTGTCCAGATGTCCGCTCTAAAAGTCTTTACCTATTCCATCCTCCTCTTCTTCACCATCATTATCCGTATCGTTCCGTCTTCTTTTTTCAGGTTTCTTTGGAAAAGTCCTCAAATTATCATTCAAAATTTCGTTGGAAACTGAAAAAATGGGAATGTCTGTCTGTGTGTCCGGATGTCCATCTGGTTCCTCGAACTTTGTAATTTCAAAATTCGAAATTCTTGAACAATCTGAAATTGATTTTTTTTTTTGGAAAATTCAAAATAATTCTCAGTACCAATCCCATAACCATCGTCGTCTGGTTCCTCTAGTTTTGGAATTTCCAGCATTTTTTGAAATTTCTGGAAAAAATTTCTAGATTTTCAGACAAATTTTAAACAGAAAAATACTTGAAAATCGATATTTCGACTTGAATTCAAAAAATTGAAATTTGAAAAAAATCGGGCAAATTTATTCAAATTAGTCATGATAATAAGTTGAGACATTCACAGGGA</canonical>
            <polymorphic>AGATAAAACTCACAAGCCCCTCCTGGATAGGCAGCCAACATCTTCTCCTTAGTATCCAATTCTCTGTATTCCTGGGCTTTCCTGGATATCACAGCGTCAAGCCATTCATCGTATTTTCTGGATGATTTTCTTGGTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAATCTCAAAAAGTTGAAAAWAATCTGTGTGTCCAGATGTCCGCTCTAAAAGTCTTTACCTATTCCATCCTCCTCTTCTTCACCATCATTATCCGTATCGTTCCGTCTTCTTTTTTCAGGTTTCTTTGGAAAAGTCCTCAAATTATCATTCAAAATTTCGTTGGAAACTGAAAAAATGGGAATGTCTGTCTGTGTGTCCGGATGTCCATCTGGTTCCTCGAACTTTGTAATTTCAAAATTCGAAATTCTTGAACAATCTGAAATTGATTTTTTTTTTTGGAAAATTCAAAATAATTCTCAGTACCAATCCCATAACCATCGTCGTCTGGTTCCTCTAGTTTTGGAATTTCCAGCATTTTTTGAAATTTCTGGAAAAAATTTCTAGATTTTCAGACAAATTTTAAACAGAAAAATACTTGAAAATCGATATTTCGACTTGAATTCAAAAAATTGAAATTTGAAAAAAATCGGGCAAATTTATTCAAATTAGTCATGATAATAAGTTGAGACATTCACAGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATTTTCTGGATGATTTTCTTG</pcr_primer_p1>
		<pcr_primer_p2>AGGAGGATGGAATAGGTAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>443</pcr_amplicon_size>
		<canonical_amplicon>GTATTTTCTGGATGATTTTCTTGGTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAATCTCAAAAAGTTGAAAAAAATCTGTGTGTCCAGATGTCCGCTCTAAAAGTCTTTACCTATTCCATCCTCCT</canonical_amplicon>
		<polymorphic_amplicon>GTATTTTCTGGATGATTTTCTTGGTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAATCTCAAAAAGTTGAAAAWAATCTGTGTGTCCAGATGTCCGCTCTAAAAGTCTTTACCTATTCCATCCTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23140</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>20421</contig_pos>
        <strand>+</strand>
        <context>AATTATCATT[C/T]AAAATTTCGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCGTCTTCTTTTTTCAGGTTTCTTTGGAAAAGTCCTCAAATTATCATT</left_flank>
        <right_flank>AAAATTTCGTTGGAAACTGAAAAAATGGGAATGTCTGTCTGTGTGTCCGG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAATCTCAAAAAGTTGAAAAAAATCTGTGTGTCCAGATGTCCGCTCTAAAAGTCTTTACCTATTCCATCCTCCTCTTCTTCACCATCATTATCCGTATCGTTCCGTCTTCTTTTTTCAGGTTTCTTTGGAAAAGTCCTCAAATTATCATTCAAAATTTCGTTGGAAACTGAAAAAATGGGAATGTCTGTCTGTGTGTCCGGATGTCCATCTGGTTCCTCGAACTTTGTAATTTCAAAATTCGAAATTCTTGAACAATCTGAAATTGATTTTTTTTTTTGGAAAATTCAAAATAATTCTCAGTACCAATCCCATAACCATCGTCGTCTGGTTCCTCTAGTTTTGGAATTTCCAGCATTTTTTGAAATTTCTGGAAAAAATTTCTAGATTTTCAGACAAATTTTAAACAGAAAAATACTTGAAAATCGATATTTCGACTTGAATTCAAAAAATTGAAATTTGAAAAAAATCGGGCAAATTTATTCAAATTAGTCATGATAATAAGTTGAGACATTCACAGGGAAACATAAATGAGTATTACAGTAAGAATTTACAGAAATAATAAAATCAAAAAATTTGATTTTTTGAATTTTTCGAAGTTTTGAAAATTTTCAAAAATCGCAAAATTCTGAAAAAAAAAATCAAAATCTTCA</canonical>
            <polymorphic>TTGGTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAATCTCAAAAAGTTGAAAAAAATCTGTGTGTCCAGATGTCCGCTCTAAAAGTCTTTACCTATTCCATCCTCCTCTTCTTCACCATCATTATCCGTATCGTTCCGTCTTCTTTTTTCAGGTTTCTTTGGAAAAGTCCTCAAATTATCATTYAAAATTTCGTTGGAAACTGAAAAAATGGGAATGTCTGTCTGTGTGTCCGGATGTCCATCTGGTTCCTCGAACTTTGTAATTTCAAAATTCGAAATTCTTGAACAATCTGAAATTGATTTTTTTTTTTGGAAAATTCAAAATAATTCTCAGTACCAATCCCATAACCATCGTCGTCTGGTTCCTCTAGTTTTGGAATTTCCAGCATTTTTTGAAATTTCTGGAAAAAATTTCTAGATTTTCAGACAAATTTTAAACAGAAAAATACTTGAAAATCGATATTTCGACTTGAATTCAAAAAATTGAAATTTGAAAAAAATCGGGCAAATTTATTCAAATTAGTCATGATAATAAGTTGAGACATTCACAGGGAAACATAAATGAGTATTACAGTAAGAATTTACAGAAATAATAAAATCAAAAAATTTGATTTTTTGAATTTTTCGAAGTTTTGAAAATTTTCAAAAATCGCAAAATTCTGAAAAAAAAAATCAAAATCTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTTCTTCACCATCATTATCC</pcr_primer_p1>
		<pcr_primer_p2>TATGGGATTGGTACTGAGAATTA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CTCTTCTTCACCATCATTATCCGTATCGTTCCGTCTTCTTTTTTCAGGTTTCTTTGGAAAAGTCCTCAAATTATCATTCAAAATTTCGTTGGAAACTGAAAAAATGGGAATGTCTGTCTGTGTGTCCGGATGTCCATCTGGTTCCTCGAACTTTGTAATTTCAAAATTCGAAATTCTTGAACAATCTGAAATTGATTTTTTTTTTTGGAAAATTCAAAATAATTCTCAGTACCAATCCCATA</canonical_amplicon>
		<polymorphic_amplicon>CTCTTCTTCACCATCATTATCCGTATCGTTCCGTCTTCTTTTTTCAGGTTTCTTTGGAAAAGTCCTCAAATTATCATTYAAAATTTCGTTGGAAACTGAAAAAATGGGAATGTCTGTCTGTGTGTCCGGATGTCCATCTGGTTCCTCGAACTTTGTAATTTCAAAATTCGAAATTCTTGAACAATCTGAAATTGATTTTTTTTTTTGGAAAATTCAAAATAATTCTCAGTACCAATCCCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23141</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>23094</contig_pos>
        <strand>+</strand>
        <context>TGAATCTAAG[G/T]ATTCTGGAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTTCGGGTTTTCGAGCATTTTGGGCATTCGGATTCTTCTGAATCTAAG</left_flank>
        <right_flank>ATTCTGGAGATTCTGAATCTGGGACACGTGGCAACCAGCATGGACAATCA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAGTTGTTCAATTTTAAGCGTTTCCAGAGTTTTCAAAAATTTCGGATTGTTAAAATTTCTAGAATTTTCGATTTTGGAAGCTTTTGGAAATTCCAGAATTTCCGAGATTTTCAGAATTTCGAATTTATCGATTTTTAAGAATTTTTTGAATTTTCAAAAAAACATTTTGAAATTTTTTCGAAAATTTCAGCTTTTTCCCTATAATTCTCCTCAATTTTCTCACTTTTCGAATCGGCAAATCTCTCAAAAATTCGAGAATCTTCTCCCGATCATTCTCTAGCACATATTGTCCATTTGGCTTATTAAAATCCGAGCAAATTTTAGCCAACATAAAATTGGCTGCAATTCCAGCCGAGCACGTTAGCCCAGTCTTTTGCTCAACACGAAATCGAATTTCCCGAACGATTTCCTCTCTTCCGATTCCAAATTCCACGTCATCATAGTAGATTTTTCGGGTTTTCGAGCATTTTGGGCATTCGGATTCTTCTGAATCTAAGTATTCTGGAGATTCTGAATCTGGGACACGTGGCAACCAGCATGGACAATCACCACCGTACCGGTGTCGTTTCAGGGTTCCTGAAAAAGGATTTTCAGTTGAAAATTGAGATTTTTACTTTTAAAAGATTGAATTTCCGGAATTTTCCATTTTTCAAAATTTCAGAATTTTCAGAATTTTCTTGAAATTGTTCAATTGAAAATTAGAGTTTTTCAGATTAAAAGTCAGAATTTTAATGTCTGAAATTTGAATTTTCGGCTCAGAAATTGGGATTTTTAGGTCAGTTAATCTGATTTTCAAGTGTTCAAAGCAGGGGTTTACTGCCTTTTCTTGGGTATTGTAGAGGTCAGAATTTGGGATTTTTAGCTCAAAATTAGGGTTTTGAGTTCGATTTTCCGATTTTTAAATACTTTTTTCCGTTCTCGCAGCGACATAATCAGTCAAATCAATATACGCCTCATCCAACGACATCATCCCCACATCTCCATCGTATTCGGCGAAA</canonical>
            <polymorphic>ATAAGTTGTTCAATTTTAAGCGTTTCCAGAGTTTTCAAAAATTTCGGATTGTTAAAATTTCTAGAATTTTCGATTTTGGAAGCTTTTGGAAATTCCAGAATTTCCGAGATTTTCAGAATTTCGAATTTATCGATTTTTAAGAATTTTTTGAATTTTCAAAAAAACATTTTGAAATTTTTTCGAAAATTTCAGCTTTTTCCCTATAATTCTCCTCAATTTTCTCACTTTTCGAATCGGCAAATCTCTCAAAAATTCGAGAATCTTCTCCCGATCATTCTCTAGCACATATTGTCCATTTGGCTTATTAAAATCCGAGCAAATTTTAGCCAACATAAAATTGGCTGCAATTCCAGCCGAGCACGTTAGCCCAGTCTTTTGCTCAACACGAAATCGAATTTCCCGAACGATTTCCTCTCTTCCGATTCCAAATTCCACGTCATCATAGTAGATTTTTCGGGTTTTCGAGCATTTTGGGCATTCGGATTCTTCTGAATCTAAGKATTCTGGAGATTCTGAATCTGGGACACGTGGCAACCAGCATGGACAATCACCACCGTACCGGTGTCGTTTCAGGGTTCCTGAAAAAGGATTTTCAGTTGAAAATTGAGATTTTTACTTTTAAAAGATTGAATTTCCGGAATTTTCCATTTTTCAAAATTTCAGAATTTTCAGAATTTTCTTGAAATTGTTCAATTGAAAATTAGAGTTTTTCAGATTAAAAGTCAGAATTTTAATGTCTGAAATTTGAATTTTCGGCTCAGAAATTGGGATTTTTAGGTCAGTTAATCTGATTTTCAAGTGTTCAAAGCAGGGGTTTACTGCCTTTTCTTGGGTATTGTAGAGGTCAGAATTTGGGATTTTTAGCTCAAAATTAGGGTTTTGAGTTCGATTTTCCGATTTTTAAATACTTTTTTCCGTTCTCGCAGCGACATAATCAGTCAAATCAATATACGCCTCATCCAACGACATCATCCCCACATCTCCATCGTATTCGGCGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTCCTCTCTTCCGATTC</pcr_primer_p1>
		<pcr_primer_p2>ATTCCGGAAATTCAATCTTT</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>GATTTCCTCTCTTCCGATTCCAAATTCCACGTCATCATAGTAGATTTTTCGGGTTTTCGAGCATTTTGGGCATTCGGATTCTTCTGAATCTAAGTATTCTGGAGATTCTGAATCTGGGACACGTGGCAACCAGCATGGACAATCACCACCGTACCGGTGTCGTTTCAGGGTTCCTGAAAAAGGATTTTCAGTTGAAAATTGAGATTTTTACTTTTAAAAGATTGAATTTCCGGAAT</canonical_amplicon>
		<polymorphic_amplicon>GATTTCCTCTCTTCCGATTCCAAATTCCACGTCATCATAGTAGATTTTTCGGGTTTTCGAGCATTTTGGGCATTCGGATTCTTCTGAATCTAAGKATTCTGGAGATTCTGAATCTGGGACACGTGGCAACCAGCATGGACAATCACCACCGTACCGGTGTCGTTTCAGGGTTCCTGAAAAAGGATTTTCAGTTGAAAATTGAGATTTTTACTTTTAAAAGATTGAATTTCCGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23142</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>134048</contig_pos>
        <strand>+</strand>
        <context>CTCCTTCACC[A/T]AATTAGAAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTTATGTTTAATCTTTTTTTAATGAATCCTTCGTAATATCTCCTTCACC</left_flank>
        <right_flank>AATTAGAAGGACCTCGTGGGAAAAAGGGCCGGACTTCTAAAATGGGCGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAATATTTTCCCAAATCCAAAAAGATTCAAAAAATACTGAAAACTTTAAAATTTTTTATTTTTGAATTTCCAAAAATTGTGAATTTCAGAACATTTGGAATTCCAAAAGTTTCACAAAATTCTTTAAAAATCCCACATTTTCCGGACATTTCAAGAATTTCAGATTTTCAGTAATCTTTAAAAATTTCGGTGTTTTGGGGGTTTTCCAAAAGTTTTGGATTTAAAAAAATTGGAATTTTCAAAAATAGGATATTCCAAAAATTCAGAATCTCAAAATATTCGAAAATTTCAAAAATTACCGGAAATTGAAAGATTTCCTAAAATTCAAAGTTTTTGAATTTTGAATTACTAAAATTTGAATTCTTGTTCATTTTCAGAATCATCCAAATAATCTGTCTGTGTGTCTGTTTTTCCAAAAATAGTAAATGTTTCCCATTATTCTTGATCTCTTATGTTTAATCTTTTTTTAATGAATCCTTCGTAATATCTCCTTCACCAAATTAGAAGGACCTCGTGGGAAAAAGGGCCGGACTTCTAAAATGGGCGTGGCCTATTTAACCGCATTTTGTATTTTACTGTCAGTGCACTGACTTTAGCAGTTTTTTGCAAAATTTTCTAGAATTTTAAAATTCAAAAATTGTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTTGTTCTCCGCAACTTGCGATTTTTCTGAAAATTCAGAATTTCAGAATCCTTCCACATTGTCACTTATTCTTCTTCTTGGAATCTTATATTCTTCTCATTTCCGCATCTCCCTCCCCTTTATTCATTTTTCTTTTTCCGCCTAATCTTATATTTTTATACCTTTTCATCATTAAAAGAATTACTTGATTATAGGAAAATATAGGTGAGGAATAAAGTATATAAATTCCTGACATAAGATTAAATGTAGATTATTTTCAGAAATTATTTCTTCTAGAATATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCA</canonical>
            <polymorphic>TTCAATATTTTCCCAAATCCAAAAAGATTCAAAAAATACTGAAAACTTTAAAATTTTTTATTTTTGAATTTCCAAAAATTGTGAATTTCAGAACATTTGGAATTCCAAAAGTTTCACAAAATTCTTTAAAAATCCCACATTTTCCGGACATTTCAAGAATTTCAGATTTTCAGTAATCTTTAAAAATTTCGGTGTTTTGGGGGTTTTCCAAAAGTTTTGGATTTAAAAAAATTGGAATTTTCAAAAATAGGATATTCCAAAAATTCAGAATCTCAAAATATTCGAAAATTTCAAAAATTACCGGAAATTGAAAGATTTCCTAAAATTCAAAGTTTTTGAATTTTGAATTACTAAAATTTGAATTCTTGTTCATTTTCAGAATCATCCAAATAATCTGTCTGTGTGTCTGTTTTTCCAAAAATAGTAAATGTTTCCCATTATTCTTGATCTCTTATGTTTAATCTTTTTTTAATGAATCCTTCGTAATATCTCCTTCACCWAATTAGAAGGACCTCGTGGGAAAAAGGGCCGGACTTCTAAAATGGGCGTGGCCTATTTAACCGCATTTTGTATTTTACTGTCAGTGCACTGACTTTAGCAGTTTTTTGCAAAATTTTCTAGAATTTTAAAATTCAAAAATTGTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTTGTTCTCCGCAACTTGCGATTTTTCTGAAAATTCAGAATTTCAGAATCCTTCCACATTGTCACTTATTCTTCTTCTTGGAATCTTATATTCTTCTCATTTCCGCATCTCCCTCCCCTTTATTCATTTTTCTTTTTCCGCCTAATCTTATATTTTTATACCTTTTCATCATTAAAAGAATTACTTGATTATAGGAAAATATAGGTGAGGAATAAAGTATATAAATTCCTGACATAAGATTAAATGTAGATTATTTTCAGAAATTATTTCTTCTAGAATATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCATTATTCTTGATCTCTTATG</pcr_primer_p1>
		<pcr_primer_p2>AAATGAAAGAAAGGAAGGAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCCATTATTCTTGATCTCTTATGTTTAATCTTTTTTTAATGAATCCTTCGTAATATCTCCTTCACCAAATTAGAAGGACCTCGTGGGAAAAAGGGCCGGACTTCTAAAATGGGCGTGGCCTATTTAACCGCATTTTGTATTTTACTGTCAGTGCACTGACTTTAGCAGTTTTTTGCAAAATTTTCTAGAATTTTAAAATTCAAAAATTGTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTT</canonical_amplicon>
		<polymorphic_amplicon>CCCATTATTCTTGATCTCTTATGTTTAATCTTTTTTTAATGAATCCTTCGTAATATCTCCTTCACCWAATTAGAAGGACCTCGTGGGAAAAAGGGCCGGACTTCTAAAATGGGCGTGGCCTATTTAACCGCATTTTGTATTTTACTGTCAGTGCACTGACTTTAGCAGTTTTTTGCAAAATTTTCTAGAATTTTAAAATTCAAAAATTGTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23144</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>134077</contig_pos>
        <strand>+</strand>
        <context>GGAAAAAGGG[C/G]CGGACTTCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTTCGTAATATCTCCTTCACCAAATTAGAAGGACCTCGTGGGAAAAAGGG</left_flank>
        <right_flank>CGGACTTCTAAAATGGGCGTGGCCTATTTAACCGCATTTTGTATTTTACT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAAAATACTGAAAACTTTAAAATTTTTTATTTTTGAATTTCCAAAAATTGTGAATTTCAGAACATTTGGAATTCCAAAAGTTTCACAAAATTCTTTAAAAATCCCACATTTTCCGGACATTTCAAGAATTTCAGATTTTCAGTAATCTTTAAAAATTTCGGTGTTTTGGGGGTTTTCCAAAAGTTTTGGATTTAAAAAAATTGGAATTTTCAAAAATAGGATATTCCAAAAATTCAGAATCTCAAAATATTCGAAAATTTCAAAAATTACCGGAAATTGAAAGATTTCCTAAAATTCAAAGTTTTTGAATTTTGAATTACTAAAATTTGAATTCTTGTTCATTTTCAGAATCATCCAAATAATCTGTCTGTGTGTCTGTTTTTCCAAAAATAGTAAATGTTTCCCATTATTCTTGATCTCTTATGTTTAATCTTTTTTTAATGAATCCTTCGTAATATCTCCTTCACCAAATTAGAAGGACCTCGTGGGAAAAAGGGCCGGACTTCTAAAATGGGCGTGGCCTATTTAACCGCATTTTGTATTTTACTGTCAGTGCACTGACTTTAGCAGTTTTTTGCAAAATTTTCTAGAATTTTAAAATTCAAAAATTGTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTTGTTCTCCGCAACTTGCGATTTTTCTGAAAATTCAGAATTTCAGAATCCTTCCACATTGTCACTTATTCTTCTTCTTGGAATCTTATATTCTTCTCATTTCCGCATCTCCCTCCCCTTTATTCATTTTTCTTTTTCCGCCTAATCTTATATTTTTATACCTTTTCATCATTAAAAGAATTACTTGATTATAGGAAAATATAGGTGAGGAATAAAGTATATAAATTCCTGACATAAGATTAAATGTAGATTATTTTCAGAAATTATTTCTTCTAGAATATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAATTTTGATAAGGAGATTGGAACTTTTTT</canonical>
            <polymorphic>CAAAAAATACTGAAAACTTTAAAATTTTTTATTTTTGAATTTCCAAAAATTGTGAATTTCAGAACATTTGGAATTCCAAAAGTTTCACAAAATTCTTTAAAAATCCCACATTTTCCGGACATTTCAAGAATTTCAGATTTTCAGTAATCTTTAAAAATTTCGGTGTTTTGGGGGTTTTCCAAAAGTTTTGGATTTAAAAAAATTGGAATTTTCAAAAATAGGATATTCCAAAAATTCAGAATCTCAAAATATTCGAAAATTTCAAAAATTACCGGAAATTGAAAGATTTCCTAAAATTCAAAGTTTTTGAATTTTGAATTACTAAAATTTGAATTCTTGTTCATTTTCAGAATCATCCAAATAATCTGTCTGTGTGTCTGTTTTTCCAAAAATAGTAAATGTTTCCCATTATTCTTGATCTCTTATGTTTAATCTTTTTTTAATGAATCCTTCGTAATATCTCCTTCACCAAATTAGAAGGACCTCGTGGGAAAAAGGGSCGGACTTCTAAAATGGGCGTGGCCTATTTAACCGCATTTTGTATTTTACTGTCAGTGCACTGACTTTAGCAGTTTTTTGCAAAATTTTCTAGAATTTTAAAATTCAAAAATTGTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTTGTTCTCCGCAACTTGCGATTTTTCTGAAAATTCAGAATTTCAGAATCCTTCCACATTGTCACTTATTCTTCTTCTTGGAATCTTATATTCTTCTCATTTCCGCATCTCCCTCCCCTTTATTCATTTTTCTTTTTCCGCCTAATCTTATATTTTTATACCTTTTCATCATTAAAAGAATTACTTGATTATAGGAAAATATAGGTGAGGAATAAAGTATATAAATTCCTGACATAAGATTAAATGTAGATTATTTTCAGAAATTATTTCTTCTAGAATATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAATTTTGATAAGGAGATTGGAACTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>503 480 17</canonical_bands>
                <polymorphic_bands>520 480</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>499 478 23</canonical_bands>
                <polymorphic_bands>522 478</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 228 157 115</canonical_bands>
                <polymorphic_bands>728 157 115</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>499 478 23</canonical_bands>
                <polymorphic_bands>522 478</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCATTATTCTTGATCTCTTATG</pcr_primer_p1>
		<pcr_primer_p2>AAATGAAAGAAAGGAAGGAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCCATTATTCTTGATCTCTTATGTTTAATCTTTTTTTAATGAATCCTTCGTAATATCTCCTTCACCAAATTAGAAGGACCTCGTGGGAAAAAGGGCCGGACTTCTAAAATGGGCGTGGCCTATTTAACCGCATTTTGTATTTTACTGTCAGTGCACTGACTTTAGCAGTTTTTTGCAAAATTTTCTAGAATTTTAAAATTCAAAAATTGTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTT</canonical_amplicon>
		<polymorphic_amplicon>CCCATTATTCTTGATCTCTTATGTTTAATCTTTTTTTAATGAATCCTTCGTAATATCTCCTTCACCAAATTAGAAGGACCTCGTGGGAAAAAGGGSCGGACTTCTAAAATGGGCGTGGCCTATTTAACCGCATTTTGTATTTTACTGTCAGTGCACTGACTTTAGCAGTTTTTTGCAAAATTTTCTAGAATTTTAAAATTCAAAAATTGTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23146</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>134135</contig_pos>
        <strand>+</strand>
        <context>ACTGTCAGTG[C/T]ACTGWCTTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAAAATGGGCGTGGCCTATTTAACCGCATTTTGTATTTTACTGTCAGTG</left_flank>
        <right_flank>ACTGACTTTAGCAGTTTTTTGCAAAATTTTCTAGAATTTTAAAATTCAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGAACATTTGGAATTCCAAAAGTTTCACAAAATTCTTTAAAAATCCCACATTTTCCGGACATTTCAAGAATTTCAGATTTTCAGTAATCTTTAAAAATTTCGGTGTTTTGGGGGTTTTCCAAAAGTTTTGGATTTAAAAAAATTGGAATTTTCAAAAATAGGATATTCCAAAAATTCAGAATCTCAAAATATTCGAAAATTTCAAAAATTACCGGAAATTGAAAGATTTCCTAAAATTCAAAGTTTTTGAATTTTGAATTACTAAAATTTGAATTCTTGTTCATTTTCAGAATCATCCAAATAATCTGTCTGTGTGTCTGTTTTTCCAAAAATAGTAAATGTTTCCCATTATTCTTGATCTCTTATGTTTAATCTTTTTTTAATGAATCCTTCGTAATATCTCCTTCACCAAATTAGAAGGACCTCGTGGGAAAAAGGGCCGGACTTCTAAAATGGGCGTGGCCTATTTAACCGCATTTTGTATTTTACTGTCAGTGCACTGACTTTAGCAGTTTTTTGCAAAATTTTCTAGAATTTTAAAATTCAAAAATTGTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTTGTTCTCCGCAACTTGCGATTTTTCTGAAAATTCAGAATTTCAGAATCCTTCCACATTGTCACTTATTCTTCTTCTTGGAATCTTATATTCTTCTCATTTCCGCATCTCCCTCCCCTTTATTCATTTTTCTTTTTCCGCCTAATCTTATATTTTTATACCTTTTCATCATTAAAAGAATTACTTGATTATAGGAAAATATAGGTGAGGAATAAAGTATATAAATTCCTGACATAAGATTAAATGTAGATTATTTTCAGAAATTATTTCTTCTAGAATATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAATTTTGATAAGGAGATTGGAACTTTTTTAAAACTGATTTTCAATAAATTCTAAATTCTATGATTTCCAAAAATTTTTAATTTTCGA</canonical>
            <polymorphic>TCAGAACATTTGGAATTCCAAAAGTTTCACAAAATTCTTTAAAAATCCCACATTTTCCGGACATTTCAAGAATTTCAGATTTTCAGTAATCTTTAAAAATTTCGGTGTTTTGGGGGTTTTCCAAAAGTTTTGGATTTAAAAAAATTGGAATTTTCAAAAATAGGATATTCCAAAAATTCAGAATCTCAAAATATTCGAAAATTTCAAAAATTACCGGAAATTGAAAGATTTCCTAAAATTCAAAGTTTTTGAATTTTGAATTACTAAAATTTGAATTCTTGTTCATTTTCAGAATCATCCAAATAATCTGTCTGTGTGTCTGTTTTTCCAAAAATAGTAAATGTTTCCCATTATTCTTGATCTCTTATGTTTAATCTTTTTTTAATGAATCCTTCGTAATATCTCCTTCACCAAATTAGAAGGACCTCGTGGGAAAAAGGGCCGGACTTCTAAAATGGGCGTGGCCTATTTAACCGCATTTTGTATTTTACTGTCAGTGYACTGACTTTAGCAGTTTTTTGCAAAATTTTCTAGAATTTTAAAATTCAAAAATTGTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTTGTTCTCCGCAACTTGCGATTTTTCTGAAAATTCAGAATTTCAGAATCCTTCCACATTGTCACTTATTCTTCTTCTTGGAATCTTATATTCTTCTCATTTCCGCATCTCCCTCCCCTTTATTCATTTTTCTTTTTCCGCCTAATCTTATATTTTTATACCTTTTCATCATTAAAAGAATTACTTGATTATAGGAAAATATAGGTGAGGAATAAAGTATATAAATTCCTGACATAAGATTAAATGTAGATTATTTTCAGAAATTATTTCTTCTAGAATATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAATTTTGATAAGGAGATTGGAACTTTTTTAAAACTGATTTTCAATAAATTCTAAATTCTATGATTTCCAAAAATTTTTAATTTTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTGCAC</site>
                <isoschizomers>
                    <enzyme>Alw44I</enzyme>
                    <enzyme>ApaLI</enzyme>
                    <enzyme>VneI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>499 479 22</canonical_bands>
                <polymorphic_bands>521 479</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>209 200 148 143 92 57 36 32 29 21 21 8 2 2</canonical_bands>
                <polymorphic_bands>209 200 150 143 92 57 36 32 29 21 21 8 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCATTATTCTTGATCTCTTATG</pcr_primer_p1>
		<pcr_primer_p2>AAATGAAAGAAAGGAAGGAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCCATTATTCTTGATCTCTTATGTTTAATCTTTTTTTAATGAATCCTTCGTAATATCTCCTTCACCAAATTAGAAGGACCTCGTGGGAAAAAGGGCCGGACTTCTAAAATGGGCGTGGCCTATTTAACCGCATTTTGTATTTTACTGTCAGTGCACTGACTTTAGCAGTTTTTTGCAAAATTTTCTAGAATTTTAAAATTCAAAAATTGTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTT</canonical_amplicon>
		<polymorphic_amplicon>CCCATTATTCTTGATCTCTTATGTTTAATCTTTTTTTAATGAATCCTTCGTAATATCTCCTTCACCAAATTAGAAGGACCTCGTGGGAAAAAGGGCCGGACTTCTAAAATGGGCGTGGCCTATTTAACCGCATTTTGTATTTTACTGTCAGTGYACTGACTTTAGCAGTTTTTTGCAAAATTTTCTAGAATTTTAAAATTCAAAAATTGTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23148</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>134140</contig_pos>
        <strand>+</strand>
        <context>CAGTGYACTG[A/T]CTTTAGCAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGGGCGTGGCCTATTTAACCGCATTTTGTATTTTACTGTCAGTGCACTG</left_flank>
        <right_flank>CTTTAGCAGTTTTTTGCAAAATTTTCTAGAATTTTAAAATTCAAAAATTG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATTTGGAATTCCAAAAGTTTCACAAAATTCTTTAAAAATCCCACATTTTCCGGACATTTCAAGAATTTCAGATTTTCAGTAATCTTTAAAAATTTCGGTGTTTTGGGGGTTTTCCAAAAGTTTTGGATTTAAAAAAATTGGAATTTTCAAAAATAGGATATTCCAAAAATTCAGAATCTCAAAATATTCGAAAATTTCAAAAATTACCGGAAATTGAAAGATTTCCTAAAATTCAAAGTTTTTGAATTTTGAATTACTAAAATTTGAATTCTTGTTCATTTTCAGAATCATCCAAATAATCTGTCTGTGTGTCTGTTTTTCCAAAAATAGTAAATGTTTCCCATTATTCTTGATCTCTTATGTTTAATCTTTTTTTAATGAATCCTTCGTAATATCTCCTTCACCAAATTAGAAGGACCTCGTGGGAAAAAGGGCCGGACTTCTAAAATGGGCGTGGCCTATTTAACCGCATTTTGTATTTTACTGTCAGTGCACTGACTTTAGCAGTTTTTTGCAAAATTTTCTAGAATTTTAAAATTCAAAAATTGTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTTGTTCTCCGCAACTTGCGATTTTTCTGAAAATTCAGAATTTCAGAATCCTTCCACATTGTCACTTATTCTTCTTCTTGGAATCTTATATTCTTCTCATTTCCGCATCTCCCTCCCCTTTATTCATTTTTCTTTTTCCGCCTAATCTTATATTTTTATACCTTTTCATCATTAAAAGAATTACTTGATTATAGGAAAATATAGGTGAGGAATAAAGTATATAAATTCCTGACATAAGATTAAATGTAGATTATTTTCAGAAATTATTTCTTCTAGAATATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAATTTTGATAAGGAGATTGGAACTTTTTTAAAACTGATTTTCAATAAATTCTAAATTCTATGATTTCCAAAAATTTTTAATTTTCGAACAAT</canonical>
            <polymorphic>ACATTTGGAATTCCAAAAGTTTCACAAAATTCTTTAAAAATCCCACATTTTCCGGACATTTCAAGAATTTCAGATTTTCAGTAATCTTTAAAAATTTCGGTGTTTTGGGGGTTTTCCAAAAGTTTTGGATTTAAAAAAATTGGAATTTTCAAAAATAGGATATTCCAAAAATTCAGAATCTCAAAATATTCGAAAATTTCAAAAATTACCGGAAATTGAAAGATTTCCTAAAATTCAAAGTTTTTGAATTTTGAATTACTAAAATTTGAATTCTTGTTCATTTTCAGAATCATCCAAATAATCTGTCTGTGTGTCTGTTTTTCCAAAAATAGTAAATGTTTCCCATTATTCTTGATCTCTTATGTTTAATCTTTTTTTAATGAATCCTTCGTAATATCTCCTTCACCAAATTAGAAGGACCTCGTGGGAAAAAGGGCCGGACTTCTAAAATGGGCGTGGCCTATTTAACCGCATTTTGTATTTTACTGTCAGTGCACTGWCTTTAGCAGTTTTTTGCAAAATTTTCTAGAATTTTAAAATTCAAAAATTGTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTTGTTCTCCGCAACTTGCGATTTTTCTGAAAATTCAGAATTTCAGAATCCTTCCACATTGTCACTTATTCTTCTTCTTGGAATCTTATATTCTTCTCATTTCCGCATCTCCCTCCCCTTTATTCATTTTTCTTTTTCCGCCTAATCTTATATTTTTATACCTTTTCATCATTAAAAGAATTACTTGATTATAGGAAAATATAGGTGAGGAATAAAGTATATAAATTCCTGACATAAGATTAAATGTAGATTATTTTCAGAAATTATTTCTTCTAGAATATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAATTTTGATAAGGAGATTGGAACTTTTTTAAAACTGATTTTCAATAAATTCTAAATTCTATGATTTCCAAAAATTTTTAATTTTCGAACAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCATTATTCTTGATCTCTTATG</pcr_primer_p1>
		<pcr_primer_p2>AAATGAAAGAAAGGAAGGAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCCATTATTCTTGATCTCTTATGTTTAATCTTTTTTTAATGAATCCTTCGTAATATCTCCTTCACCAAATTAGAAGGACCTCGTGGGAAAAAGGGCCGGACTTCTAAAATGGGCGTGGCCTATTTAACCGCATTTTGTATTTTACTGTCAGTGCACTGACTTTAGCAGTTTTTTGCAAAATTTTCTAGAATTTTAAAATTCAAAAATTGTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTT</canonical_amplicon>
		<polymorphic_amplicon>CCCATTATTCTTGATCTCTTATGTTTAATCTTTTTTTAATGAATCCTTCGTAATATCTCCTTCACCAAATTAGAAGGACCTCGTGGGAAAAAGGGCCGGACTTCTAAAATGGGCGTGGCCTATTTAACCGCATTTTGTATTTTACTGTCAGTGCACTGWCTTTAGCAGTTTTTTGCAAAATTTTCTAGAATTTTAAAATTCAAAAATTGTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23150</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>135430</contig_pos>
        <strand>+</strand>
        <context>TAAAACTCTT[C/G]CAAAGATCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAAAAAATTTTTTCTAGAATTTCTTTTCCCACCCTTGAATAAAACTCTT</left_flank>
        <right_flank>CAAAGATCAGGCATTACTCATAGGTCTTGTACTTTATTCCTCCTTTTTTC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCTTTAAAGTTGAATTCAACTTTTAAAAATTTTCCATGTTAAAAAATATAATATTTCAAGAAAGTGAAAAAAGCTAACACAAAAAACATGCTCAAAATAGGTGTCTGACAAAAATTACTAAATATTTCAGAAAGCATTCTTTTTTAAACCTTTTGAAAAAAAAATTGTAGACTAGAAAACCATTTGAAGACTCTTTTAGAATTTTATATTTGCTTCAGGAAAGTTTTCAAAGAGATTCTGAAATCTGGAAGTTTTGAGCTTTGAAATCCCAGGATTTCCAGGTATTTTGGGATTTTTCGATTCCGAAAAAGGGATGTCGAGACTTGCAGGTTTCAGAATTTTTTAAAATTACCAAAATTTTCAAATTCAGAGGTTTCGATATTCTGATTTCCTGAACGTTGAACACAATAGGTCAGATGTTTTTTAGAATTTCAAAATTCCCAAATAAAAAAAAATTTTTTCTAGAATTTCTTTTCCCACCCTTGAATAAAACTCTTGCAAAGATCAGGCATTACTCATAGGTCTTGTACTTTATTCCTCCTTTTTTCTCCTTATTTTCCACTTCCGAATCCCGTAAAAACATTGTTTCTCACGAGTTGAGAAATGCGTATTCTCTTATTTTTCTACTCAATAATTTATTTAATAGAACATGTACTAGGAATTTCTCACAAGTATAAAGATTTTTTACATCCGGAATTCTTTTTTTGAATCTATTTCCAGAAAGTTCAGAATCTCTTATGGGTTTTTGGAATTCCATAGTGCAGGAAATCTAATTTTAATTTCAAAAAACGGAAAAAATTAATTTTAGAAATAAAAAAAGGAAAACATTTTGCTATTCCTGTTGTCTGGCTCAAAAGGAACTTTTTTTTCTTTTTTTTCTGGAAAATGAAAAAGATCTGAAATTCAAATTCAAAAAAAAAGAAATTTCAGAATTTTTAAGAATTCTTATATTTCGAATTCTGAATTTTTCGATTTATCAAATTTCTGATTTTCTTAAA</canonical>
            <polymorphic>CTCCTTTAAAGTTGAATTCAACTTTTAAAAATTTTCCATGTTAAAAAATATAATATTTCAAGAAAGTGAAAAAAGCTAACACAAAAAACATGCTCAAAATAGGTGTCTGACAAAAATTACTAAATATTTCAGAAAGCATTCTTTTTTAAACCTTTTGAAAAAAAAATTGTAGACTAGAAAACCATTTGAAGACTCTTTTAGAATTTTATATTTGCTTCAGGAAAGTTTTCAAAGAGATTCTGAAATCTGGAAGTTTTGAGCTTTGAAATCCCAGGATTTCCAGGTATTTTGGGATTTTTCGATTCCGAAAAAGGGATGTCGAGACTTGCAGGTTTCAGAATTTTTTAAAATTACCAAAATTTTCAAATTCAGAGGTTTCGATATTCTGATTTCCTGAACGTTGAACACAATAGGTCAGATGTTTTTTAGAATTTCAAAATTCCCAAATAAAAAAAAATTTTTTCTAGAATTTCTTTTCCCACCCTTGAATAAAACTCTTSCAAAGATCAGGCATTACTCATAGGTCTTGTACTTTATTCCTCCTTTTTTCTCCTTATTTTCCACTTCCGAATCCCGTAAAAACATTGTTTCTCACGAGTTGAGAAATGCGTATTCTCTTATTTTTCTACTCAATAATTTATTTAATAGAACATGTACTAGGAATTTCTCACAAGTATAAAGATTTTTTACATCCGGAATTCTTTTTTTGAATCTATTTCCAGAAAGTTCAGAATCTCTTATGGGTTTTTGGAATTCCATAGTGCAGGAAATCTAATTTTAATTTCAAAAAACGGAAAAAATTAATTTTAGAAATAAAAAAAGGAAAACATTTTGCTATTCCTGTTGTCTGGCTCAAAAGGAACTTTTTTTTCTTTTTTTTCTGGAAAATGAAAAAGATCTGAAATTCAAATTCAAAAAAAAAGAAATTTCAGAATTTTTAAGAATTCTTATATTTCGAATTCTGAATTTTTCGATTTATCAAATTTCTGATTTTCTTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>328 263 237 172</canonical_bands>
                <polymorphic_bands>435 328 237</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTTTCAAATTCAGAGGTTTC</pcr_primer_p1>
		<pcr_primer_p2>TCTCAACTCGTGAGAAACAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAATTTTCAAATTCAGAGGTTTCGATATTCTGATTTCCTGAACGTTGAACACAATAGGTCAGATGTTTTTTAGAATTTCAAAATTCCCAAATAAAAAAAAATTTTTTCTAGAATTTCTTTTCCCACCCTTGAATAAAACTCTTGCAAAGATCAGGCATTACTCATAGGTCTTGTACTTTATTCCTCCTTTTTTCTCCTTATTTTCCACTTCCGAATCCCGTAAAAACATTGTTTCTCACGAGTTGAGA</canonical_amplicon>
		<polymorphic_amplicon>AAATTTTCAAATTCAGAGGTTTCGATATTCTGATTTCCTGAACGTTGAACACAATAGGTCAGATGTTTTTTAGAATTTCAAAATTCCCAAATAAAAAAAAATTTTTTCTAGAATTTCTTTTCCCACCCTTGAATAAAACTCTTSCAAAGATCAGGCATTACTCATAGGTCTTGTACTTTATTCCTCCTTTTTTCTCCTTATTTTCCACTTCCGAATCCCGTAAAAACATTGTTTCTCACGAGTTGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23152</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>246814</contig_pos>
        <strand>+</strand>
        <context>AAACTTTGAA[A/G]GTCTAAGTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTTCAGACAGTGTTTGACAGTGTTTTCAGACAGTTCCAAAACTTTGAA</left_flank>
        <right_flank>GTCTAAGTCTCTGCATGTTGGTCAGTAGCCAACACAACACAACAGCATTG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCAAGAAAAACCAGCTCAAACATGATAGGACGCCTCTATTATTGGTTTTAGGTTAATCCAAAAGTTTAGAAGATAGCTCCCCGGTAGTAGAGGACACAACAGCTCCTCCCGAGGTCGCATGGTATCATAATGAACATTTTGTAAGTTGAACATTTTTTGACATCTTTTATAGGAACCGAGATAATTGTGCTCAAGGTATAGGTGGGCGTGTCGCTGAGTAGGCCGCTTGCTACCTCTATACTTGCAGCTGATTTATCTTGGTTTCTATTAGAGATATCAAAAAATGGTTAACTGACAAAATGTTTATCATAATATCAGAAATGTTTTGTCAGTTGACCGTTTTTTGATTACTTTTATAGGAAGCGAGATAGTTGAGCTCAAACTTGATACGGCTCTTTATTACAGGTTTTACGGTAAGCCAAAATTTTGAAGGTCTAACAAGGGAAGTGTTTTCAGACAGTGTTTGACAGTGTTTTCAGACAGTTCCAAAACTTTGAAGGTCTAAGTCTCTGCATGTTGGTCAGTAGCCAACACAACACAACAGCATTGCTCCGAGGTCACATGGACACATGGACGGACCGTAAGTTGAAACAAGATGAAGAAGAAGAAGAAGACGAATGCTTATGGCAAAGAAGACGGCACCAGCAAGGTGTGAGTCAGGCGAGATAGTGTTACGAGGTAAGAGAGAACAGAGAAAGAGAGAAAAGTTATTGGAGAGGAGATGATGAAGGATTTCAGCAATAATGGAGAAGAAGAGAACAGTAAACATACCAAACAATAATTTCTGTCAAGAAGATCTAATGTTCCGATTTTTTGCATTTTTGGATGTATTGACTTTTGTAGACCCCTTTTTTAGAATTGCTGCTCTTACTGAAATCATGAAAACTTTCAAAATAGCTTTTCGAACTTGTCTCGTTGTCTATCCTTAACTTCCAATGTCCTAATCCTCTCTCTCTCTCTCTCGTACTTCTTACTTTTTGGTATAAAAAACAATCTCCT</canonical>
            <polymorphic>GCCAAGAAAAACCAGCTCAAACATGATAGGACGCCTCTATTATTGGTTTTAGGTTAATCCAAAAGTTTAGAAGATAGCTCCCCGGTAGTAGAGGACACAACAGCTCCTCCCGAGGTCGCATGGTATCATAATGAACATTTTGTAAGTTGAACATTTTTTGACATCTTTTATAGGAACCGAGATAATTGTGCTCAAGGTATAGGTGGGCGTGTCGCTGAGTAGGCCGCTTGCTACCTCTATACTTGCAGCTGATTTATCTTGGTTTCTATTAGAGATATCAAAAAATGGTTAACTGACAAAATGTTTATCATAATATCAGAAATGTTTTGTCAGTTGACCGTTTTTTGATTACTTTTATAGGAAGCGAGATAGTTGAGCTCAAACTTGATACGGCTCTTTATTACAGGTTTTACGGTAAGCCAAAATTTTGAAGGTCTAACAAGGGAAGTGTTTTCAGACAGTGTTTGACAGTGTTTTCAGACAGTTCCAAAACTTTGAARGTCTAAGTCTCTGCATGTTGGTCAGTAGCCAACACAACACAACAGCATTGCTCCGAGGTCACATGGACACATGGACGGACCGTAAGTTGAAACAAGATGAAGAAGAAGAAGAAGACGAATGCTTATGGCAAAGAAGACGGCACCAGCAAGGTGTGAGTCAGGCGAGATAGTGTTACGAGGTAAGAGAGAACAGAGAAAGAGAGAAAAGTTATTGGAGAGGAGATGATGAAGGATTTCAGCAATAATGGAGAAGAAGAGAACAGTAAACATACCAAACAATAATTTCTGTCAAGAAGATCTAATGTTCCGATTTTTTGCATTTTTGGATGTATTGACTTTTGTAGACCCCTTTTTTAGAATTGCTGCTCTTACTGAAATCATGAAAACTTTCAAAATAGCTTTTCGAACTTGTCTCGTTGTCTATCCTTAACTTCCAATGTCCTAATCCTCTCTCTCTCTCTCTCGTACTTCTTACTTTTTGGTATAAAAAACAATCTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAGGACACAACAGCTCCT</pcr_primer_p1>
		<pcr_primer_p2>CTTCATCTTGTTTCAACTTACG</pcr_primer_p2>
		<pcr_amplicon_size>514</pcr_amplicon_size>
		<canonical_amplicon>TAGAGGACACAACAGCTCCTCCCGAGGTCGCATGGTATCATAATGAACATTTTGTAAGTTGAACATTTTTTGACATCTTTTATAGGAACCGAGATAATTGTGCTCAAGGTATAGGTGGGCGTGTCGCTGAGTAGGCCGCTTGCTACCTCTATACTTGCAGCTGATTTATCTTGGTTTCTATTAGAGATATCAAAAAATGGTTAACTGACAAAATGTTTATCATAATATCAGAAATGTTTTGTCAGTTGACCGTTTTTTGATTACTTTTATAGGAAGCGAGATAGTTGAGCTCAAACTTGATACGGCTCTTTATTACAGGTTTTACGGTAAGCCAAAATTTTGAAGGTCTAACAAGGGAAGTGTTTTCAGACAGTGTTTGACAGTGTTTTCAGACAGTTCCAAAACTTTGAAGGTCTAAGTCTCTGCATGTTGGTCAGTAGCCAACACAACACAACAGCATTGCTCCGAGGTCACATGGACACATGGACGGACCGTAAGTTGAAACAAGATGAAG</canonical_amplicon>
		<polymorphic_amplicon>TAGAGGACACAACAGCTCCTCCCGAGGTCGCATGGTATCATAATGAACATTTTGTAAGTTGAACATTTTTTGACATCTTTTATAGGAACCGAGATAATTGTGCTCAAGGTATAGGTGGGCGTGTCGCTGAGTAGGCCGCTTGCTACCTCTATACTTGCAGCTGATTTATCTTGGTTTCTATTAGAGATATCAAAAAATGGTTAACTGACAAAATGTTTATCATAATATCAGAAATGTTTTGTCAGTTGACCGTTTTTTGATTACTTTTATAGGAAGCGAGATAGTTGAGCTCAAACTTGATACGGCTCTTTATTACAGGTTTTACGGTAAGCCAAAATTTTGAAGGTCTAACAAGGGAAGTGTTTTCAGACAGTGTTTGACAGTGTTTTCAGACAGTTCCAAAACTTTGAARGTCTAAGTCTCTGCATGTTGGTCAGTAGCCAACACAACACAACAGCATTGCTCCGAGGTCACATGGACACATGGACGGACCGTAAGTTGAAACAAGATGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23153</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>247160</contig_pos>
        <strand>+</strand>
        <context>CTTTTGTAGA[C/T]CCCTTTTTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATCTAATGTTCCGATTTTTTGCATTTTTGGATGTATTGACTTTTGTAGA</left_flank>
        <right_flank>CCCTTTTTTAGAATTGCTGCTCTTACTGAAATCATGAAAACTTTCAAAAT</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTACTTTTATAGGAAGCGAGATAGTTGAGCTCAAACTTGATACGGCTCTTTATTACAGGTTTTACGGTAAGCCAAAATTTTGAAGGTCTAACAAGGGAAGTGTTTTCAGACAGTGTTTGACAGTGTTTTCAGACAGTTCCAAAACTTTGAAGGTCTAAGTCTCTGCATGTTGGTCAGTAGCCAACACAACACAACAGCATTGCTCCGAGGTCACATGGACACATGGACGGACCGTAAGTTGAAACAAGATGAAGAAGAAGAAGAAGACGAATGCTTATGGCAAAGAAGACGGCACCAGCAAGGTGTGAGTCAGGCGAGATAGTGTTACGAGGTAAGAGAGAACAGAGAAAGAGAGAAAAGTTATTGGAGAGGAGATGATGAAGGATTTCAGCAATAATGGAGAAGAAGAGAACAGTAAACATACCAAACAATAATTTCTGTCAAGAAGATCTAATGTTCCGATTTTTTGCATTTTTGGATGTATTGACTTTTGTAGACCCCTTTTTTAGAATTGCTGCTCTTACTGAAATCATGAAAACTTTCAAAATAGCTTTTCGAACTTGTCTCGTTGTCTATCCTTAACTTCCAATGTCCTAATCCTCTCTCTCTCTCTCTCGTACTTCTTACTTTTTGGTATAAAAAACAATCTCCTATCTTTTTCTCTGTTGAAATTTCTCAACCTTCTGATGGTTCTTATGTTTACACAGAAGTATTCGTCATTGTACTTGGCATTTTGAATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTNNNNNNNNNNATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATTGATCAATTAGCAAAACCGTAATACTTTCGAGGTGGTACCACATTCAAATAGGTCGGCAGTTAGAACTTAAGATCGTGTAGCTCAGAAGGTAGCGGATTGAGAAGTGTTCAAACCATATAAACGCTGTAACAG</canonical>
            <polymorphic>GATTACTTTTATAGGAAGCGAGATAGTTGAGCTCAAACTTGATACGGCTCTTTATTACAGGTTTTACGGTAAGCCAAAATTTTGAAGGTCTAACAAGGGAAGTGTTTTCAGACAGTGTTTGACAGTGTTTTCAGACAGTTCCAAAACTTTGAAGGTCTAAGTCTCTGCATGTTGGTCAGTAGCCAACACAACACAACAGCATTGCTCCGAGGTCACATGGACACATGGACGGACCGTAAGTTGAAACAAGATGAAGAAGAAGAAGAAGACGAATGCTTATGGCAAAGAAGACGGCACCAGCAAGGTGTGAGTCAGGCGAGATAGTGTTACGAGGTAAGAGAGAACAGAGAAAGAGAGAAAAGTTATTGGAGAGGAGATGATGAAGGATTTCAGCAATAATGGAGAAGAAGAGAACAGTAAACATACCAAACAATAATTTCTGTCAAGAAGATCTAATGTTCCGATTTTTTGCATTTTTGGATGTATTGACTTTTGTAGAYCCCTTTTTTAGAATTGCTGCTCTTACTGAAATCATGAAAACTTTCAAAATAGCTTTTCGAACTTGTCTCGTTGTCTATCCTTAACTTCCAATGTCCTAATCCTCTCTCTCTCTCTCTCGTACTTCTTACTTTTTGGTATAAAAAACAATCTCCTATCTTTTTCTCTGTTGAAATTTCTCAACCTTCTGATGGTTCTTATGTTTACACAGAAGTATTCGTCATTGTACTTGGCATTTTGAATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTNNNNNNNNNNATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATTGATCAATTAGCAAAACCGTAATACTTTCGAGGTGGTACCACATTCAAATAGGTCGGCAGTTAGAACTTAAGATCGTGTAGCTCAGAAGGTAGCGGATTGAGAAGTGTTCAAACCATATAAACGCTGTAACAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>419 205 173 78 77 48</canonical_bands>
                <polymorphic_bands>419 283 173 77 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAAACAATAATTTCTGTCAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTCAACAGAGAAAAAGATAGGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACCAAACAATAATTTCTGTCAAGAAGATCTAATGTTCCGATTTTTTGCATTTTTGGATGTATTGACTTTTGTAGACCCCTTTTTTAGAATTGCTGCTCTTACTGAAATCATGAAAACTTTCAAAATAGCTTTTCGAACTTGTCTCGTTGTCTATCCTTAACTTCCAATGTCCTAATCCTCTCTCTCTCTCTCTCGTACTTCTTACTTTTTGGTATAAAAAACAATCTCCTATCTTTTTCTCTGTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>ACCAAACAATAATTTCTGTCAAGAAGATCTAATGTTCCGATTTTTTGCATTTTTGGATGTATTGACTTTTGTAGAYCCCTTTTTTAGAATTGCTGCTCTTACTGAAATCATGAAAACTTTCAAAATAGCTTTTCGAACTTGTCTCGTTGTCTATCCTTAACTTCCAATGTCCTAATCCTCTCTCTCTCTCTCTCGTACTTCTTACTTTTTGGTATAAAAAACAATCTCCTATCTTTTTCTCTGTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23154</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>250417</contig_pos>
        <strand>+</strand>
        <context>AGTGAGAATG[A/G]TTCGGGAGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATG</left_flank>
        <right_flank>TTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGAGTGAAATTCAACATTCAAAAACCCAAGGGACGGGATCTTTTGTGTCTTTGGAAGCGAGGAAACACATTCGTCCTCAGGGGAACAGGCTTATCGATAGCCATGGAGGTTCAAGAAGCTTCTGGAACTTCAGAGGAAATTTGGATCAGTGCTTGCCCATTAGATCCTTACCATCAAAACCTGTTGCCAGAATTACTAGGATCTGAAGTTCAAGTTTTCCAGAGACTTGAAGACACCAAACACATTTTGGAGGCGTTCCCGACGAACGGAACCCCAGCAAAGTTCCTGGACATCTTGCTGGGATCCCAAACTATCAATTGGAGATGTCCTCCTCAATTCAACTACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGG</canonical>
            <polymorphic>CGGAGTGAAATTCAACATTCAAAAACCCAAGGGACGGGATCTTTTGTGTCTTTGGAAGCGAGGAAACACATTCGTCCTCAGGGGAACAGGCTTATCGATAGCCATGGAGGTTCAAGAAGCTTCTGGAACTTCAGAGGAAATTTGGATCAGTGCTTGCCCATTAGATCCTTACCATCAAAACCTGTTGCCAGAATTACTAGGATCTGAAGTTCAAGTTTTCCAGAGACTTGAAGACACCAAACACATTTTGGAGGCGTTCCCGACGAACGGAACCCCAGCAAAGTTCCTGGACATCTTGCTGGGATCCCAAACTATCAATTGGAGATGTCCTCCTCAATTCAACTACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGRTTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>453 359 121 46 21</canonical_bands>
                <polymorphic_bands>453 405 121 21</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>480 453 46 21</canonical_bands>
                <polymorphic_bands>526 453 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTCCTCAATTCAACTACTTCTT</pcr_primer_p1>
		<pcr_primer_p2>CTGTAGGATAGGCTTCTTCATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTCCTCAATTCAACTACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAG</canonical_amplicon>
		<polymorphic_amplicon>CCTCCTCAATTCAACTACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGRTTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23155</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>250468</contig_pos>
        <strand>+</strand>
        <context>GAGGATTGTA[A/G]ATCGCAATGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTA</left_flank>
        <right_flank>ATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGG</right_flank>
        <qual_score>145</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGAAGCGAGGAAACACATTCGTCCTCAGGGGAACAGGCTTATCGATAGCCATGGAGGTTCAAGAAGCTTCTGGAACTTCAGAGGAAATTTGGATCAGTGCTTGCCCATTAGATCCTTACCATCAAAACCTGTTGCCAGAATTACTAGGATCTGAAGTTCAAGTTTTCCAGAGACTTGAAGACACCAAACACATTTTGGAGGCGTTCCCGACGAACGGAACCCCAGCAAAGTTCCTGGACATCTTGCTGGGATCCCAAACTATCAATTGGAGATGTCCTCCTCAATTCAACTACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTC</canonical>
            <polymorphic>TTGGAAGCGAGGAAACACATTCGTCCTCAGGGGAACAGGCTTATCGATAGCCATGGAGGTTCAAGAAGCTTCTGGAACTTCAGAGGAAATTTGGATCAGTGCTTGCCCATTAGATCCTTACCATCAAAACCTGTTGCCAGAATTACTAGGATCTGAAGTTCAAGTTTTCCAGAGACTTGAAGACACCAAACACATTTTGGAGGCGTTCCCGACGAACGGAACCCCAGCAAAGTTCCTGGACATCTTGCTGGGATCCCAAACTATCAATTGGAGATGTCCTCCTCAATTCAACTACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTARATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>263 248 106 102 93 66 37 33 23 19 10</canonical_bands>
                <polymorphic_bands>281 263 106 102 93 66 37 23 19 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATCAAGTCTGTGTGTAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>AGTGAAATTGTGGCATCTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACT</canonical_amplicon>
		<polymorphic_amplicon>CAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTARATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23156</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>250937</contig_pos>
        <strand>+</strand>
        <context>GATTTCCYTK[G/T]TTCCAGCAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTG</left_flank>
        <right_flank>TTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGATCTCCATGATGCCAGAGCTCAAATCCTTCACCGGGACCATCGAGCCTGCCCAAGGCATCTCTTTCGATGTCACTATAATTCTGACGAATGGATTTTTGGAAGACGAAAAATACAATGAAAAATATGAACGACGAATGAATACCGCGTTATCTAGAGCCAATAAACTATGCATCTTGGTGACGGATGTTGGAAAAGC</canonical>
            <polymorphic>CCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGKTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGATCTCCATGATGCCAGAGCTCAAATCCTTCACCGGGACCATCGAGCCTGCCCAAGGCATCTCTTTCGATGTCACTATAATTCTGACGAATGGATTTTTGGAAGACGAAAAATACAATGAAAAATATGAACGACGAATGAATACCGCGTTATCTAGAGCCAATAAACTATGCATCTTGGTGACGGATGTTGGAAAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>420 359 146 75</canonical_bands>
                <polymorphic_bands>434 420 146</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>310 249 161 136 116 28</canonical_bands>
                <polymorphic_bands>310 249 164 161 116</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>495 339 166</canonical_bands>
                <polymorphic_bands>834 166</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATAGTCTTCCGAAGCTCCT</pcr_primer_p1>
		<pcr_primer_p2>ATTCCAAAATCTATGACCTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAAT</canonical_amplicon>
		<polymorphic_amplicon>GATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGKTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23157</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>250936</contig_pos>
        <strand>+</strand>
        <context>AGATTTCCYT[G/T]KTTCCAGCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCT</left_flank>
        <right_flank>GTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGATCTCCATGATGCCAGAGCTCAAATCCTTCACCGGGACCATCGAGCCTGCCCAAGGCATCTCTTTCGATGTCACTATAATTCTGACGAATGGATTTTTGGAAGACGAAAAATACAATGAAAAATATGAACGACGAATGAATACCGCGTTATCTAGAGCCAATAAACTATGCATCTTGGTGACGGATGTTGGAAAAG</canonical>
            <polymorphic>CCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTKGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGATCTCCATGATGCCAGAGCTCAAATCCTTCACCGGGACCATCGAGCCTGCCCAAGGCATCTCTTTCGATGTCACTATAATTCTGACGAATGGATTTTTGGAAGACGAAAAATACAATGAAAAATATGAACGACGAATGAATACCGCGTTATCTAGAGCCAATAAACTATGCATCTTGGTGACGGATGTTGGAAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>495 339 163 3</canonical_bands>
                <polymorphic_bands>834 163 3</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>420 359 145 75 1</canonical_bands>
                <polymorphic_bands>434 420 145 1</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>310 250 160 136 116 28</canonical_bands>
                <polymorphic_bands>310 250 164 160 116</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>502 495 3</canonical_bands>
                <polymorphic_bands>997 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATAGTCTTCCGAAGCTCCT</pcr_primer_p1>
		<pcr_primer_p2>ATTCCAAAATCTATGACCTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAAT</canonical_amplicon>
		<polymorphic_amplicon>GATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTKGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23158</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>250934</contig_pos>
        <strand>+</strand>
        <context>CTAGATTTCC[C/T]TKKTTCCAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCC</left_flank>
        <right_flank>TGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGATCTCCATGATGCCAGAGCTCAAATCCTTCACCGGGACCATCGAGCCTGCCCAAGGCATCTCTTTCGATGTCACTATAATTCTGACGAATGGATTTTTGGAAGACGAAAAATACAATGAAAAATATGAACGACGAATGAATACCGCGTTATCTAGAGCCAATAAACTATGCATCTTGGTGACGGATGTTGGAAA</canonical>
            <polymorphic>TTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCYTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGATCTCCATGATGCCAGAGCTCAAATCCTTCACCGGGACCATCGAGCCTGCCCAAGGCATCTCTTTCGATGTCACTATAATTCTGACGAATGGATTTTTGGAAGACGAAAAATACAATGAAAAATATGAACGACGAATGAATACCGCGTTATCTAGAGCCAATAAACTATGCATCTTGGTGACGGATGTTGGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>495 339 161 5</canonical_bands>
                <polymorphic_bands>834 161 5</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>500 495 5</canonical_bands>
                <polymorphic_bands>995 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATAGTCTTCCGAAGCTCCT</pcr_primer_p1>
		<pcr_primer_p2>ATTCCAAAATCTATGACCTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAAT</canonical_amplicon>
		<polymorphic_amplicon>GATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCYTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23159</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>250767</contig_pos>
        <strand>+</strand>
        <context>CGWYSARKYC[A/G]ACACTATGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCC</left_flank>
        <right_flank>ACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGATCTCCATGATGCCAGAGCTCAAATCC</canonical>
            <polymorphic>TCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCRACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGATCTCCATGATGCCAGAGCTCAAATCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 251 246</canonical_bands>
                <polymorphic_bands>749 251</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCTACCTTGATCGGAATTTAC</pcr_primer_p1>
		<pcr_primer_p2>CACCTACAAATCCAAATCTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTG</canonical_amplicon>
		<polymorphic_amplicon>GATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCRACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23160</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>250765</contig_pos>
        <strand>+</strand>
        <context>WKCGWYSARK[C/T]CRACACTATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGG</left_flank>
        <right_flank>CAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGATCTCCATGATGCCAGAGCTCAAAT</canonical>
            <polymorphic>CTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGYCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGATCTCCATGATGCCAGAGCTCAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 253 246</canonical_bands>
                <polymorphic_bands>747 253</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>150 138 134 119 82 57 55 51 41 35 30 22 21 19 14 12 9 7 4</canonical_bands>
                <polymorphic_bands>160 150 138 134 82 57 55 51 35 30 22 21 19 14 12 9 7 4</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 253 246</canonical_bands>
                <polymorphic_bands>747 253</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCTACCTTGATCGGAATTTAC</pcr_primer_p1>
		<pcr_primer_p2>CACCTACAAATCCAAATCTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTG</canonical_amplicon>
		<polymorphic_amplicon>GATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGYCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23161</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>250764</contig_pos>
        <strand>+</strand>
        <context>MWKCGWYSAR[G/T]YCRACACTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAG</left_flank>
        <right_flank>CCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGATCTCCATGATGCCAGAGCTCAAA</canonical>
            <polymorphic>TCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGKCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGATCTCCATGATGCCAGAGCTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 254 246</canonical_bands>
                <polymorphic_bands>746 254</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>150 138 134 119 82 57 55 51 41 35 30 22 22 19 14 12 9 6 4</canonical_bands>
                <polymorphic_bands>160 150 138 134 82 57 55 51 35 30 22 22 19 14 12 9 6 4</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 254 246</canonical_bands>
                <polymorphic_bands>746 254</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCTACCTTGATCGGAATTTAC</pcr_primer_p1>
		<pcr_primer_p2>CACCTACAAATCCAAATCTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTG</canonical_amplicon>
		<polymorphic_amplicon>GATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGKCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23162</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>250763</contig_pos>
        <strand>+</strand>
        <context>WMWKCGWYSA[A/G]KYCRACACTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGA</left_flank>
        <right_flank>GCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGATCTCCATGATGCCAGAGCTCAA</canonical>
            <polymorphic>TTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGARGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGATCTCCATGATGCCAGAGCTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>499 255 246</canonical_bands>
                <polymorphic_bands>745 255</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>150 138 134 119 82 57 55 51 41 35 30 23 22 19 14 12 9 5 4</canonical_bands>
                <polymorphic_bands>160 150 138 134 82 57 55 51 35 30 23 22 19 14 12 9 5 4</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>499 255 246</canonical_bands>
                <polymorphic_bands>745 255</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCTACCTTGATCGGAATTTAC</pcr_primer_p1>
		<pcr_primer_p2>CACCTACAAATCCAAATCTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTG</canonical_amplicon>
		<polymorphic_amplicon>GATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGARGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23163</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>250761</contig_pos>
        <strand>+</strand>
        <context>TCWMWKCGWY[C/G]ARKYCRACAC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGAC</left_flank>
        <right_flank>AGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGATCTCCATGATGCCAGAGCTC</canonical>
            <polymorphic>ACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACSAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGATCTCCATGATGCCAGAGCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>500 301 199</canonical_bands>
                <polymorphic_bands>699 301</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCTACCTTGATCGGAATTTAC</pcr_primer_p1>
		<pcr_primer_p2>CACCTACAAATCCAAATCTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTG</canonical_amplicon>
		<polymorphic_amplicon>GATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACSAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23164</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>250760</contig_pos>
        <strand>+</strand>
        <context>TTCWMWKCGW[C/T]SARKYCRACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGA</left_flank>
        <right_flank>GAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGATCTCCATGATGCCAGAGCT</canonical>
            <polymorphic>TACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGAYGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGATCTCCATGATGCCAGAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>501 300 199</canonical_bands>
                <polymorphic_bands>700 300</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCTACCTTGATCGGAATTTAC</pcr_primer_p1>
		<pcr_primer_p2>CACCTACAAATCCAAATCTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTG</canonical_amplicon>
		<polymorphic_amplicon>GATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGAYGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23165</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>250759</contig_pos>
        <strand>+</strand>
        <context>GTTCWMWKCG[A/T]YSARKYCRAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCG</left_flank>
        <right_flank>CGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGATCTCCATGATGCCAGAGC</canonical>
            <polymorphic>CTACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGWCGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGATCTCCATGATGCCAGAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>234 217 206 199 75 69</canonical_bands>
                <polymorphic_bands>405 234 217 75 69</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>502 299 199</canonical_bands>
                <polymorphic_bands>701 299</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCTACCTTGATCGGAATTTAC</pcr_primer_p1>
		<pcr_primer_p2>CACCTACAAATCCAAATCTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTG</canonical_amplicon>
		<polymorphic_amplicon>GATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGWCGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23166</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>250756</contig_pos>
        <strand>+</strand>
        <context>ARMGTTCWMW[G/T]CGWYSARKYC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAAT</left_flank>
        <right_flank>CGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACTACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGATCTCCATGATGCCAG</canonical>
            <polymorphic>CAACTACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATKCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGATCTCCATGATGCCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>234 217 206 199 78 66</canonical_bands>
                <polymorphic_bands>405 234 217 78 66</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>240 208 121 117 109 69 33 31 30 26 16</canonical_bands>
                <polymorphic_bands>240 208 154 117 109 69 31 30 26 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCTACCTTGATCGGAATTTAC</pcr_primer_p1>
		<pcr_primer_p2>CACCTACAAATCCAAATCTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTG</canonical_amplicon>
		<polymorphic_amplicon>GATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATKCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23167</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>250755</contig_pos>
        <strand>+</strand>
        <context>CARMGTTCWM[A/T]KCGWYSARKY</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAA</left_flank>
        <right_flank>TCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAACTACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGATCTCCATGATGCCA</canonical>
            <polymorphic>TCAACTACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAAWTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGATCTCCATGATGCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>241 207 121 117 109 69 33 31 30 26 16</canonical_bands>
                <polymorphic_bands>241 207 154 117 109 69 31 30 26 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCTACCTTGATCGGAATTTAC</pcr_primer_p1>
		<pcr_primer_p2>CACCTACAAATCCAAATCTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTG</canonical_amplicon>
		<polymorphic_amplicon>GATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAAWTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23168</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>250754</contig_pos>
        <strand>+</strand>
        <context>TCARMGTTCW[A/C]WKCGWYSARK</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCA</left_flank>
        <right_flank>TTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAACTACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGATCTCCATGATGCC</canonical>
            <polymorphic>TTCAACTACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAMTTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGATCTCCATGATGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>242 206 121 117 109 69 33 31 30 26 16</canonical_bands>
                <polymorphic_bands>242 206 154 117 109 69 31 30 26 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCTACCTTGATCGGAATTTAC</pcr_primer_p1>
		<pcr_primer_p2>CACCTACAAATCCAAATCTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTG</canonical_amplicon>
		<polymorphic_amplicon>GATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAMTTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23169</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>250753</contig_pos>
        <strand>+</strand>
        <context>CTCARMGTTC[A/T]MWKCGWYSAR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTC</left_flank>
        <right_flank>ATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCAACTACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGATCTCCATGATGC</canonical>
            <polymorphic>ATTCAACTACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCWATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGATCTCCATGATGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>243 205 121 117 109 69 33 31 30 26 16</canonical_bands>
                <polymorphic_bands>243 205 154 117 109 69 31 30 26 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCTACCTTGATCGGAATTTAC</pcr_primer_p1>
		<pcr_primer_p2>CACCTACAAATCCAAATCTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTG</canonical_amplicon>
		<polymorphic_amplicon>GATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCWATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23171</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>250748</contig_pos>
        <strand>+</strand>
        <context>AAAKMCTCAR[A/C]GTTCWMWKCG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAG</left_flank>
        <right_flank>GTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCAATTCAACTACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGATCTCCAT</canonical>
            <polymorphic>CCTCAATTCAACTACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGMGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGATCTCCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCTACCTTGATCGGAATTTAC</pcr_primer_p1>
		<pcr_primer_p2>CACCTACAAATCCAAATCTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTG</canonical_amplicon>
		<polymorphic_amplicon>GATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGMGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23173</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>250742</contig_pos>
        <strand>+</strand>
        <context>CCTATCAAAK[A/C]CTCARMGTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAAT</left_flank>
        <right_flank>CTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCCTCCTCAATTCAACTACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGAT</canonical>
            <polymorphic>TGTCCTCCTCAATTCAACTACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATMCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCTACCTTGATCGGAATTTAC</pcr_primer_p1>
		<pcr_primer_p2>CACCTACAAATCCAAATCTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTG</canonical_amplicon>
		<polymorphic_amplicon>GATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATMCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23176</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>253114</contig_pos>
        <strand>+</strand>
        <context>TTTCTTGTGG[G/T]GTGTGMAGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCGAATTGCCGCTCGTTTGGCGCCAATGGCACCGTCCATTTCTTGTGG</left_flank>
        <right_flank>GTGTGAAGGGGGTGGCTACAGCAAGTGTTGGTCCACAGGTTGGGAAATGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACAGAGAAAGAAAAAATTGTACATATTCTATTTGTACCTAATCGAAAAGAATAACTGGTTAGTAGTAGCACCGTCTAGATAAGAACAAGGAAATAGTAATTGTAATCAGTGTAATTTATAAATCTTCATGTCTTCCGCTGTCGACGCCTTCTGACTCCACCACTTCTCGAATGTCTTGGTTTTTGAGAACAATTTGAGCCATGGAGTGAATGAGGAGGGTTCTTGCTCCATCCAATTCCTCAACTCATCCATCCCGACTTCTCGGATCTCGGCCACCTCGTTCTCGTTGATTCGACAGTGATCTGCTCCGATTCCTCTCAAAATCAACGCGTAATCCAGCTCATGCTCTCCCCATGGCGCCTCATCCATCTCCGCTCGATAGATCCATCGTCCGTTCATCTGTAGACGATCCGTGTGCACTTCAGTTATGCCTAGCTCATGATCCAATTTTCGAATTGCCGCTCGTTTGGCGCCAATGGCACCGTCCATTTCTTGTGGTGTGTGAAGGGGGTGGCTACAGCAAGTGTTGGTCCACAGGTTGGGAAATGTTATCTGGAATAATCGAGGGTGGAAAATTCGAAATTTTAATTGAGAGGTATTTGAGAGGGGGCGTAGATCAAAAGGNNNNNNNNNNNNATAGAGCATTTAAAGGGGCGGATCGTATGAGTATAAGCTCCGCCCCTTTTGATCCTCTATAAAATCATTATGAAAAAGGGCGGAGCTTAAAGGTTTTTTTCCCAAAATTCATACTTTTTCAGCACTTCGCTTCTGCATAAGAAGTTTGTTGTCCTTGGTGAATGAGAAGACGGAGAAGGCGCGATGGAGGGTTACTGTAAGATGAGGGACTACTTTTTGGAAAATTCAGCGAAAACTAGGCCATGCTCGAAATGGTCTAGAATCCCAAAAAAGAGAAAACTTCGGCCATTTTTAAAAATAGAAAATTTTCGGCTAAAAATCGGTCGTTTTTGAGCGAACTTTAGCTAATTTTTTGCATGGCCT</canonical>
            <polymorphic>TACAGAGAAAGAAAAAATTGTACATATTCTATTTGTACCTAATCGAAAAGAATAACTGGTTAGTAGTAGCACCGTCTAGATAAGAACAAGGAAATAGTAATTGTAATCAGTGTAATTTATAAATCTTCATGTCTTCCGCTGTCGACGCCTTCTGACTCCACCACTTCTCGAATGTCTTGGTTTTTGAGAACAATTTGAGCCATGGAGTGAATGAGGAGGGTTCTTGCTCCATCCAATTCCTCAACTCATCCATCCCGACTTCTCGGATCTCGGCCACCTCGTTCTCGTTGATTCGACAGTGATCTGCTCCGATTCCTCTCAAAATCAACGCGTAATCCAGCTCATGCTCTCCCCATGGCGCCTCATCCATCTCCGCTCGATAGATCCATCGTCCGTTCATCTGTAGACGATCCGTGTGCACTTCAGTTATGCCTAGCTCATGATCCAATTTTCGAATTGCCGCTCGTTTGGCGCCAATGGCACCGTCCATTTCTTGTGGKGTGTGAAGGGGGTGGCTACAGCAAGTGTTGGTCCACAGGTTGGGAAATGTTATCTGGAATAATCGAGGGTGGAAAATTCGAAATTTTAATTGAGAGGTATTTGAGAGGGGGCGTAGATCAAAAGGNNNNNNNNNNNNATAGAGCATTTAAAGGGGCGGATCGTATGAGTATAAGCTCCGCCCCTTTTGATCCTCTATAAAATCATTATGAAAAAGGGCGGAGCTTAAAGGTTTTTTTCCCAAAATTCATACTTTTTCAGCACTTCGCTTCTGCATAAGAAGTTTGTTGTCCTTGGTGAATGAGAAGACGGAGAAGGCGCGATGGAGGGTTACTGTAAGATGAGGGACTACTTTTTGGAAAATTCAGCGAAAACTAGGCCATGCTCGAAATGGTCTAGAATCCCAAAAAAGAGAAAACTTCGGCCATTTTTAAAAATAGAAAATTTTCGGCTAAAAATCGGTCGTTTTTGAGCGAACTTTAGCTAATTTTTTGCATGGCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>203 190 115 71 67 62 48 46 41 36 36 25 16 13 9 8 3 3 2 2 2 2</canonical_bands>
                <polymorphic_bands>203 190 115 71 67 62 48 46 41 36 36 25 16 13 9 8 5 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAAAATCAACGCGTAATC</pcr_primer_p1>
		<pcr_primer_p2>TCGATTATTCCAGATAACATTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCAAAATCAACGCGTAATCCAGCTCATGCTCTCCCCATGGCGCCTCATCCATCTCCGCTCGATAGATCCATCGTCCGTTCATCTGTAGACGATCCGTGTGCACTTCAGTTATGCCTAGCTCATGATCCAATTTTCGAATTGCCGCTCGTTTGGCGCCAATGGCACCGTCCATTTCTTGTGGTGTGTGAAGGGGGTGGCTACAGCAAGTGTTGGTCCACAGGTTGGGAAATGTTATCTGGAATAATCGA</canonical_amplicon>
		<polymorphic_amplicon>CTCAAAATCAACGCGTAATCCAGCTCATGCTCTCCCCATGGCGCCTCATCCATCTCCGCTCGATAGATCCATCGTCCGTTCATCTGTAGACGATCCGTGTGCACTTCAGTTATGCCTAGCTCATGATCCAATTTTCGAATTGCCGCTCGTTTGGCGCCAATGGCACCGTCCATTTCTTGTGGKGTGTGAAGGGGGTGGCTACAGCAAGTGTTGGTCCACAGGTTGGGAAATGTTATCTGGAATAATCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23177</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>253120</contig_pos>
        <strand>+</strand>
        <context>GTGGKGTGTG[A/C]AGGGGGTGGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTGCCGCTCGTTTGGCGCCAATGGCACCGTCCATTTCTTGTGGTGTGTG</left_flank>
        <right_flank>AGGGGGTGGCTACAGCAAGTGTTGGTCCACAGGTTGGGAAATGTTATCTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAGAAAAAATTGTACATATTCTATTTGTACCTAATCGAAAAGAATAACTGGTTAGTAGTAGCACCGTCTAGATAAGAACAAGGAAATAGTAATTGTAATCAGTGTAATTTATAAATCTTCATGTCTTCCGCTGTCGACGCCTTCTGACTCCACCACTTCTCGAATGTCTTGGTTTTTGAGAACAATTTGAGCCATGGAGTGAATGAGGAGGGTTCTTGCTCCATCCAATTCCTCAACTCATCCATCCCGACTTCTCGGATCTCGGCCACCTCGTTCTCGTTGATTCGACAGTGATCTGCTCCGATTCCTCTCAAAATCAACGCGTAATCCAGCTCATGCTCTCCCCATGGCGCCTCATCCATCTCCGCTCGATAGATCCATCGTCCGTTCATCTGTAGACGATCCGTGTGCACTTCAGTTATGCCTAGCTCATGATCCAATTTTCGAATTGCCGCTCGTTTGGCGCCAATGGCACCGTCCATTTCTTGTGGTGTGTGAAGGGGGTGGCTACAGCAAGTGTTGGTCCACAGGTTGGGAAATGTTATCTGGAATAATCGAGGGTGGAAAATTCGAAATTTTAATTGAGAGGTATTTGAGAGGGGGCGTAGATCAAAAGGNNNNNNNNNNNNATAGAGCATTTAAAGGGGCGGATCGTATGAGTATAAGCTCCGCCCCTTTTGATCCTCTATAAAATCATTATGAAAAAGGGCGGAGCTTAAAGGTTTTTTTCCCAAAATTCATACTTTTTCAGCACTTCGCTTCTGCATAAGAAGTTTGTTGTCCTTGGTGAATGAGAAGACGGAGAAGGCGCGATGGAGGGTTACTGTAAGATGAGGGACTACTTTTTGGAAAATTCAGCGAAAACTAGGCCATGCTCGAAATGGTCTAGAATCCCAAAAAAGAGAAAACTTCGGCCATTTTTAAAAATAGAAAATTTTCGGCTAAAAATCGGTCGTTTTTGAGCGAACTTTAGCTAATTTTTTGCATGGCCTAGAATC</canonical>
            <polymorphic>GAAAGAAAAAATTGTACATATTCTATTTGTACCTAATCGAAAAGAATAACTGGTTAGTAGTAGCACCGTCTAGATAAGAACAAGGAAATAGTAATTGTAATCAGTGTAATTTATAAATCTTCATGTCTTCCGCTGTCGACGCCTTCTGACTCCACCACTTCTCGAATGTCTTGGTTTTTGAGAACAATTTGAGCCATGGAGTGAATGAGGAGGGTTCTTGCTCCATCCAATTCCTCAACTCATCCATCCCGACTTCTCGGATCTCGGCCACCTCGTTCTCGTTGATTCGACAGTGATCTGCTCCGATTCCTCTCAAAATCAACGCGTAATCCAGCTCATGCTCTCCCCATGGCGCCTCATCCATCTCCGCTCGATAGATCCATCGTCCGTTCATCTGTAGACGATCCGTGTGCACTTCAGTTATGCCTAGCTCATGATCCAATTTTCGAATTGCCGCTCGTTTGGCGCCAATGGCACCGTCCATTTCTTGTGGTGTGTGMAGGGGGTGGCTACAGCAAGTGTTGGTCCACAGGTTGGGAAATGTTATCTGGAATAATCGAGGGTGGAAAATTCGAAATTTTAATTGAGAGGTATTTGAGAGGGGGCGTAGATCAAAAGGNNNNNNNNNNNNATAGAGCATTTAAAGGGGCGGATCGTATGAGTATAAGCTCCGCCCCTTTTGATCCTCTATAAAATCATTATGAAAAAGGGCGGAGCTTAAAGGTTTTTTTCCCAAAATTCATACTTTTTCAGCACTTCGCTTCTGCATAAGAAGTTTGTTGTCCTTGGTGAATGAGAAGACGGAGAAGGCGCGATGGAGGGTTACTGTAAGATGAGGGACTACTTTTTGGAAAATTCAGCGAAAACTAGGCCATGCTCGAAATGGTCTAGAATCCCAAAAAAGAGAAAACTTCGGCCATTTTTAAAAATAGAAAATTTTCGGCTAAAAATCGGTCGTTTTTGAGCGAACTTTAGCTAATTTTTTGCATGGCCTAGAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAAAATCAACGCGTAATC</pcr_primer_p1>
		<pcr_primer_p2>TCGATTATTCCAGATAACATTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCAAAATCAACGCGTAATCCAGCTCATGCTCTCCCCATGGCGCCTCATCCATCTCCGCTCGATAGATCCATCGTCCGTTCATCTGTAGACGATCCGTGTGCACTTCAGTTATGCCTAGCTCATGATCCAATTTTCGAATTGCCGCTCGTTTGGCGCCAATGGCACCGTCCATTTCTTGTGGTGTGTGAAGGGGGTGGCTACAGCAAGTGTTGGTCCACAGGTTGGGAAATGTTATCTGGAATAATCGA</canonical_amplicon>
		<polymorphic_amplicon>CTCAAAATCAACGCGTAATCCAGCTCATGCTCTCCCCATGGCGCCTCATCCATCTCCGCTCGATAGATCCATCGTCCGTTCATCTGTAGACGATCCGTGTGCACTTCAGTTATGCCTAGCTCATGATCCAATTTTCGAATTGCCGCTCGTTTGGCGCCAATGGCACCGTCCATTTCTTGTGGTGTGTGMAGGGGGTGGCTACAGCAAGTGTTGGTCCACAGGTTGGGAAATGTTATCTGGAATAATCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23178</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>255061</contig_pos>
        <strand>+</strand>
        <context>CCACCATCAA[A/C]ACTCACACTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAACAGTAAGAATACAAAGACAAGAAAAAATTTTCCTCAGCCACCATCAA</left_flank>
        <right_flank>ACTCACACTGCTGCGAACTGTGAGCATCCCGTTTGCTAATCGCTCCAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTCGGAGAAATGGAGAAAATTCCGCGAAATTGCGGAGAATGAACCAATCTAGCTGAAATTTCGGAGAAAATCGGAGAAAATTATAGAGAGCATATTCACAAAATTTGGGGTCGCAAAATTAATTTTGAAATTTTGGCTGGGAATTCCANNNNNNNNNNAATAACCCCAATAGTTTTTTCTCAAATTTCGCGGTAATTGATTGGAAAAAAAATGTTAAACATTTTTTTGAATGTTTTATTGCATGTTTGAACCCTTTTCGGAAAAAAAGCGACTTTTGGGCCAAACTCTAGGATTTTTGAATTTTTGTAGGAAAATCACTGAACTTGGGATTGTTATTCTCACACGATGATTGAGGAACATACAAAAAATGAGAAAAACTTCAATTCCACGAAAATTGGGAAAAACTTGGGGAATTGTGAAAAAATGGAAAAAAGAGGAAAATGAGGAAACAGTAAGAATACAAAGACAAGAAAAAATTTTCCTCAGCCACCATCAACACTCACACTGCTGCGAACTGTGAGCATCCCGTTTGCTAATCGCTCCAATTATGTCGTCGTTCTCGTCGACACTTATACATGCCTCTCGCATGTATTCCACCTGTTTAGCATTGTAGCTCGCCAGCTCCACGTGGCATTGTTGTTCTTGGCGGCGCGGTGCCAATGCTGACAGACCCCGTAGCGATGAGAGTTTCTTCATTTTGAAAGGGGAAGGCGGTGGCCTAGAAAAAGTTGGAGGATAGTTAGGCCAGCTATTTTTTCGGCCAGAAAGCGTCAAAATATGGAATATTAATCGCTTGAAAATAACGATTTTTTAACATTGAAGAAAAAAATTTTCAGAAAAACCGGTTTAATAAATTTTGAAAAACCGCGTATTTTAAAAAGAAAGAAATTTTGAGAATCAAAAAAATCACATAAAAAAAGACCACAAAAACTACAAAAATTAAAAAAATAGAGAAAAATTAAGGATTCGCCTTCCGATGGCCGGCTACACAGTCGGT</canonical>
            <polymorphic>AAATTCGGAGAAATGGAGAAAATTCCGCGAAATTGCGGAGAATGAACCAATCTAGCTGAAATTTCGGAGAAAATCGGAGAAAATTATAGAGAGCATATTCACAAAATTTGGGGTCGCAAAATTAATTTTGAAATTTTGGCTGGGAATTCCANNNNNNNNNNAATAACCCCAATAGTTTTTTCTCAAATTTCGCGGTAATTGATTGGAAAAAAAATGTTAAACATTTTTTTGAATGTTTTATTGCATGTTTGAACCCTTTTCGGAAAAAAAGCGACTTTTGGGCCAAACTCTAGGATTTTTGAATTTTTGTAGGAAAATCACTGAACTTGGGATTGTTATTCTCACACGATGATTGAGGAACATACAAAAAATGAGAAAAACTTCAATTCCACGAAAATTGGGAAAAACTTGGGGAATTGTGAAAAAATGGAAAAAAGAGGAAAATGAGGAAACAGTAAGAATACAAAGACAAGAAAAAATTTTCCTCAGCCACCATCAAMACTCACACTGCTGCGAACTGTGAGCATCCCGTTTGCTAATCGCTCCAATTATGTCGTCGTTCTCGTCGACACTTATACATGCCTCTCGCATGTATTCCACCTGTTTAGCATTGTAGCTCGCCAGCTCCACGTGGCATTGTTGTTCTTGGCGGCGCGGTGCCAATGCTGACAGACCCCGTAGCGATGAGAGTTTCTTCATTTTGAAAGGGGAAGGCGGTGGCCTAGAAAAAGTTGGAGGATAGTTAGGCCAGCTATTTTTTCGGCCAGAAAGCGTCAAAATATGGAATATTAATCGCTTGAAAATAACGATTTTTTAACATTGAAGAAAAAAATTTTCAGAAAAACCGGTTTAATAAATTTTGAAAAACCGCGTATTTTAAAAAGAAAGAAATTTTGAGAATCAAAAAAATCACATAAAAAAAGACCACAAAAACTACAAAAATTAAAAAAATAGAGAAAAATTAAGGATTCGCCTTCCGATGGCCGGCTACACAGTCGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>219 193 101 71 65 60 49 45 30 30 28 26 24 15 15 9 8 4 4 2 2</canonical_bands>
                <polymorphic_bands>219 193 101 71 65 60 49 45 30 30 28 26 24 15 15 13 8 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGTTATTCTCACACGATGATT</pcr_primer_p1>
		<pcr_primer_p2>CATGTATAAGTGTCGACGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTGTTATTCTCACACGATGATTGAGGAACATACAAAAAATGAGAAAAACTTCAATTCCACGAAAATTGGGAAAAACTTGGGGAATTGTGAAAAAATGGAAAAAAGAGGAAAATGAGGAAACAGTAAGAATACAAAGACAAGAAAAAATTTTCCTCAGCCACCATCAACACTCACACTGCTGCGAACTGTGAGCATCCCGTTTGCTAATCGCTCCAATTATGTCGTCGTTCTCGTCGACACTTATACATG</canonical_amplicon>
		<polymorphic_amplicon>ATTGTTATTCTCACACGATGATTGAGGAACATACAAAAAATGAGAAAAACTTCAATTCCACGAAAATTGGGAAAAACTTGGGGAATTGTGAAAAAATGGAAAAAAGAGGAAAATGAGGAAACAGTAAGAATACAAAGACAAGAAAAAATTTTCCTCAGCCACCATCAAMACTCACACTGCTGCGAACTGTGAGCATCCCGTTTGCTAATCGCTCCAATTATGTCGTCGTTCTCGTCGACACTTATACATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23179</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>351329</contig_pos>
        <strand></strand>
        <context>TGGGTTTTCT[T/A]GACTATGTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTTTATTTTTCAATTTCAATGTTCCCATAACCGAGTTATTGGGTTTTCT</left_flank>
        <right_flank>GACTATGTCTTATATATGTTTCCCCATAGGGTGGACCATCTGTCATTCTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTCTATTAAGTTTTTAAAAAGTGACATTTCAGAACTGACCAATTTGCAACTGACTCGAAATCCGTTTTTTTATAATTTCCAAGGATTTTGGTCTGAATTTTTTAAACTTAGATAATCTGAAAAATTCTTAAGCCCTAGAAATAGCTGAAAGTTTAAGAAATTCCACTTTTAATAAATTTTCAGATCCCCCCCCCCCTTTGGTGCCGTCAAACGAAGCTATTAGAACGCTACGGATTCGGTTCTTTTAACATTTTAAAAGTCAGTTTTCAATAAATTTTTCAGAAGTGACGTTTCAGGACTGGTCGTTTTGTTGCCGTTCTGAAACGAGCAGTTCCAAACCTTCCGGTTACAAAATTCTCTTATTTTTCAGGTACACTTACGCCTTGTTAAAAATATCTCAAAATTATGCCATAATGTCAAAAACTATAAAAAACTGTAAGATTTTGATTTTTATTTTTCAATTTCAATGTTCCCATAACCGAGTTATTGGGTTTTCTTGACTATGTCTTATATATGTTTCCCCATAGGGTGGACCATCTGTCATTCTAATCTCACCTATCTATCTATCCTTCTTTCCCAAAGGTCCAGAGGTCAGAAAAATCAATAAGACTCATTCTTTGTCTATCCCCTCTATATATGGTCCCTTCATTTTTTTTTTCAGTATATACAATCCCCCACCGTCATGCCAATCAATCTACACCAATTTCCAAAGGAATTGATTCTGGAAGTTCTGAGAAACGTCGATCTTCGAGGATTGTGAGTTTTTTTCTCATTTTTCGTTGATTTTTAGTTAGAAATGATCAGATTTAGGTGTCTGTAAAATCACTGTATTCTTTTCCGTTTGGTTTGAAAATGTTGGGAACCAGTCGGTTTACGCCCTTCGTGGCTTAACCTCCTGGCCTCCGGTCGCCCTCCACCATCGCCATTTATGCACAACACCCTTTAGTGTGGTAAAACCAAGGAACGTCTCCAGAAGACTTCAAAATCAAAATTTCGAA</canonical>
            <polymorphic>GTTTCTATTAAGTTTTTAAAAAGTGACATTTCAGAACTGACCAATTTGCAACTGACTCGAAATCCGTTTTTTTATAATTTCCAAGGATTTTGGTCTGAATTTTTTAAACTTAGATAATCTGAAAAATTCTTAAGCCCTAGAAATAGCTGAAAGTTTAAGAAATTCCACTTTTAATAAATTTTCAGATCCCCCCCCCCCTTTGGTGCCGTCAAACGAAGCTATTAGAACGCTACGGATTCGGTTCTTTTAACATTTTAAAAGTCAGTTTTCAATAAATTTTTCAGAAGTGACGTTTCAGGACTGGTCGTTTTGTTGCCGTTCTGAAACGAGCAGTTCCAAACCTTCCGGTTACAAAATTCTCTTATTTTTCAGGTACACTTACGCCTTGTTAAAAATATCTCAAAATTATGCCATAATGTCAAAAACTATAAAAAACTGTAAGATTTTGATTTTTATTTTTCAATTTCAATGTTCCCATAACCGAGTTATTGGGTTTTCTWGACTATGTCTTATATATGTTTCCCCATAGGGTGGACCATCTGTCATTCTAATCTCACCTATCTATCTATCCTTCTTTCCCAAAGGTCCAGAGGTCAGAAAAATCAATAAGACTCATTCTTTGTCTATCCCCTCTATATATGGTCCCTTCATTTTTTTTTTCAGTATATACAATCCCCCACCGTCATGCCAATCAATCTACACCAATTTCCAAAGGAATTGATTCTGGAAGTTCTGAGAAACGTCGATCTTCGAGGATTGTGAGTTTTTTTCTCATTTTTCGTTGATTTTTAGTTAGAAATGATCAGATTTAGGTGTCTGTAAAATCACTGTATTCTTTTCCGTTTGGTTTGAAAATGTTGGGAACCAGTCGGTTTACGCCCTTCGTGGCTTAACCTCCTGGCCTCCGGTCGCCCTCCACCATCGCCATTTATGCACAACACCCTTTAGTGTGGTAAAACCAAGGAACGTCTCCAGAAGACTTCAAAATCAAAATTTCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTATTTTTCAGGTACACTTACG</pcr_primer_p1>
		<pcr_primer_p2>CTTATTGATTTTTCTGACCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTTATTTTTCAGGTACACTTACGCCTTGTTAAAAATATCTCAAAATTATGCCATAATGTCAAAAACTATAAAAAACTGTAAGATTTTGATTTTTATTTTTCAATTTCAATGTTCCCATAACCGAGTTATTGGGTTTTCTTGACTATGTCTTATATATGTTTCCCCATAGGGTGGACCATCTGTCATTCTAATCTCACCTATCTATCTATCCTTCTTTCCCAAAGGTCCAGAGGTCAGAAAAATCAATAAG</canonical_amplicon>
		<polymorphic_amplicon>TCTTATTTTTCAGGTACACTTACGCCTTGTTAAAAATATCTCAAAATTATGCCATAATGTCAAAAACTATAAAAAACTGTAAGATTTTGATTTTTATTTTTCAATTTCAATGTTCCCATAACCGAGTTATTGGGTTTTCTWGACTATGTCTTATATATGTTTCCCCATAGGGTGGACCATCTGTCATTCTAATCTCACCTATCTATCTATCCTTCTTTCCCAAAGGTCCAGAGGTCAGAAAAATCAATAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23180</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>351316</contig_pos>
        <strand></strand>
        <context>ATAACCGAGT[T/A]ATTGGGTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGTAAGATTTTGATTTTTATTTTTCAATTTCAATGTTCCCATAACCGAGT</left_flank>
        <right_flank>ATTGGGTTTTCTTGACTATGTCTTATATATGTTTCCCCATAGGGTGGACC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAATTAAAGTGAGTTTCTATTAAGTTTTTAAAAAGTGACATTTCAGAACTGACCAATTTGCAACTGACTCGAAATCCGTTTTTTTATAATTTCCAAGGATTTTGGTCTGAATTTTTTAAACTTAGATAATCTGAAAAATTCTTAAGCCCTAGAAATAGCTGAAAGTTTAAGAAATTCCACTTTTAATAAATTTTCAGATCCCCCCCCCCCTTTGGTGCCGTCAAACGAAGCTATTAGAACGCTACGGATTCGGTTCTTTTAACATTTTAAAAGTCAGTTTTCAATAAATTTTTCAGAAGTGACGTTTCAGGACTGGTCGTTTTGTTGCCGTTCTGAAACGAGCAGTTCCAAACCTTCCGGTTACAAAATTCTCTTATTTTTCAGGTACACTTACGCCTTGTTAAAAATATCTCAAAATTATGCCATAATGTCAAAAACTATAAAAAACTGTAAGATTTTGATTTTTATTTTTCAATTTCAATGTTCCCATAACCGAGTTATTGGGTTTTCTTGACTATGTCTTATATATGTTTCCCCATAGGGTGGACCATCTGTCATTCTAATCTCACCTATCTATCTATCCTTCTTTCCCAAAGGTCCAGAGGTCAGAAAAATCAATAAGACTCATTCTTTGTCTATCCCCTCTATATATGGTCCCTTCATTTTTTTTTTCAGTATATACAATCCCCCACCGTCATGCCAATCAATCTACACCAATTTCCAAAGGAATTGATTCTGGAAGTTCTGAGAAACGTCGATCTTCGAGGATTGTGAGTTTTTTTCTCATTTTTCGTTGATTTTTAGTTAGAAATGATCAGATTTAGGTGTCTGTAAAATCACTGTATTCTTTTCCGTTTGGTTTGAAAATGTTGGGAACCAGTCGGTTTACGCCCTTCGTGGCTTAACCTCCTGGCCTCCGGTCGCCCTCCACCATCGCCATTTATGCACAACACCCTTTAGTGTGGTAAAACCAAGGAACGTCTCCAGAAGACTTCAAAA</canonical>
            <polymorphic>ACAATTAAAGTGAGTTTCTATTAAGTTTTTAAAAAGTGACATTTCAGAACTGACCAATTTGCAACTGACTCGAAATCCGTTTTTTTATAATTTCCAAGGATTTTGGTCTGAATTTTTTAAACTTAGATAATCTGAAAAATTCTTAAGCCCTAGAAATAGCTGAAAGTTTAAGAAATTCCACTTTTAATAAATTTTCAGATCCCCCCCCCCCTTTGGTGCCGTCAAACGAAGCTATTAGAACGCTACGGATTCGGTTCTTTTAACATTTTAAAAGTCAGTTTTCAATAAATTTTTCAGAAGTGACGTTTCAGGACTGGTCGTTTTGTTGCCGTTCTGAAACGAGCAGTTCCAAACCTTCCGGTTACAAAATTCTCTTATTTTTCAGGTACACTTACGCCTTGTTAAAAATATCTCAAAATTATGCCATAATGTCAAAAACTATAAAAAACTGTAAGATTTTGATTTTTATTTTTCAATTTCAATGTTCCCATAACCGAGTWATTGGGTTTTCTTGACTATGTCTTATATATGTTTCCCCATAGGGTGGACCATCTGTCATTCTAATCTCACCTATCTATCTATCCTTCTTTCCCAAAGGTCCAGAGGTCAGAAAAATCAATAAGACTCATTCTTTGTCTATCCCCTCTATATATGGTCCCTTCATTTTTTTTTTCAGTATATACAATCCCCCACCGTCATGCCAATCAATCTACACCAATTTCCAAAGGAATTGATTCTGGAAGTTCTGAGAAACGTCGATCTTCGAGGATTGTGAGTTTTTTTCTCATTTTTCGTTGATTTTTAGTTAGAAATGATCAGATTTAGGTGTCTGTAAAATCACTGTATTCTTTTCCGTTTGGTTTGAAAATGTTGGGAACCAGTCGGTTTACGCCCTTCGTGGCTTAACCTCCTGGCCTCCGGTCGCCCTCCACCATCGCCATTTATGCACAACACCCTTTAGTGTGGTAAAACCAAGGAACGTCTCCAGAAGACTTCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTATTTTTCAGGTACACTTACG</pcr_primer_p1>
		<pcr_primer_p2>CTTATTGATTTTTCTGACCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTTATTTTTCAGGTACACTTACGCCTTGTTAAAAATATCTCAAAATTATGCCATAATGTCAAAAACTATAAAAAACTGTAAGATTTTGATTTTTATTTTTCAATTTCAATGTTCCCATAACCGAGTTATTGGGTTTTCTTGACTATGTCTTATATATGTTTCCCCATAGGGTGGACCATCTGTCATTCTAATCTCACCTATCTATCTATCCTTCTTTCCCAAAGGTCCAGAGGTCAGAAAAATCAATAAG</canonical_amplicon>
		<polymorphic_amplicon>TCTTATTTTTCAGGTACACTTACGCCTTGTTAAAAATATCTCAAAATTATGCCATAATGTCAAAAACTATAAAAAACTGTAAGATTTTGATTTTTATTTTTCAATTTCAATGTTCCCATAACCGAGTWATTGGGTTTTCTTGACTATGTCTTATATATGTTTCCCCATAGGGTGGACCATCTGTCATTCTAATCTCACCTATCTATCTATCCTTCTTTCCCAAAGGTCCAGAGGTCAGAAAAATCAATAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23181</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>351283</contig_pos>
        <strand></strand>
        <context>TTTTGATTTT[T/G]ATTTTTCAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AATTATGCCATAATGTCAAAAACTATAAAAAACTGTAAGATTTTGATTTT</left_flank>
        <right_flank>ATTTTTCAATTTCAATGTTCCCATAACCGAGTTATTGGGTTTTCTTGACT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTCTCCCAACATGGTACTACTCGAGAAAGTTTACAATTAAAGTGAGTTTCTATTAAGTTTTTAAAAAGTGACATTTCAGAACTGACCAATTTGCAACTGACTCGAAATCCGTTTTTTTATAATTTCCAAGGATTTTGGTCTGAATTTTTTAAACTTAGATAATCTGAAAAATTCTTAAGCCCTAGAAATAGCTGAAAGTTTAAGAAATTCCACTTTTAATAAATTTTCAGATCCCCCCCCCCCTTTGGTGCCGTCAAACGAAGCTATTAGAACGCTACGGATTCGGTTCTTTTAACATTTTAAAAGTCAGTTTTCAATAAATTTTTCAGAAGTGACGTTTCAGGACTGGTCGTTTTGTTGCCGTTCTGAAACGAGCAGTTCCAAACCTTCCGGTTACAAAATTCTCTTATTTTTCAGGTACACTTACGCCTTGTTAAAAATATCTCAAAATTATGCCATAATGTCAAAAACTATAAAAAACTGTAAGATTTTGATTTTTATTTTTCAATTTCAATGTTCCCATAACCGAGTTATTGGGTTTTCTTGACTATGTCTTATATATGTTTCCCCATAGGGTGGACCATCTGTCATTCTAATCTCACCTATCTATCTATCCTTCTTTCCCAAAGGTCCAGAGGTCAGAAAAATCAATAAGACTCATTCTTTGTCTATCCCCTCTATATATGGTCCCTTCATTTTTTTTTTCAGTATATACAATCCCCCACCGTCATGCCAATCAATCTACACCAATTTCCAAAGGAATTGATTCTGGAAGTTCTGAGAAACGTCGATCTTCGAGGATTGTGAGTTTTTTTCTCATTTTTCGTTGATTTTTAGTTAGAAATGATCAGATTTAGGTGTCTGTAAAATCACTGTATTCTTTTCCGTTTGGTTTGAAAATGTTGGGAACCAGTCGGTTTACGCCCTTCGTGGCTTAACCTCCTGGCCTCCGGTCGCCCTCCACCATCGCCATTTATGCACAACACCCTTTAGTGTGGT</canonical>
            <polymorphic>CGTCTCCCAACATGGTACTACTCGAGAAAGTTTACAATTAAAGTGAGTTTCTATTAAGTTTTTAAAAAGTGACATTTCAGAACTGACCAATTTGCAACTGACTCGAAATCCGTTTTTTTATAATTTCCAAGGATTTTGGTCTGAATTTTTTAAACTTAGATAATCTGAAAAATTCTTAAGCCCTAGAAATAGCTGAAAGTTTAAGAAATTCCACTTTTAATAAATTTTCAGATCCCCCCCCCCCTTTGGTGCCGTCAAACGAAGCTATTAGAACGCTACGGATTCGGTTCTTTTAACATTTTAAAAGTCAGTTTTCAATAAATTTTTCAGAAGTGACGTTTCAGGACTGGTCGTTTTGTTGCCGTTCTGAAACGAGCAGTTCCAAACCTTCCGGTTACAAAATTCTCTTATTTTTCAGGTACACTTACGCCTTGTTAAAAATATCTCAAAATTATGCCATAATGTCAAAAACTATAAAAAACTGTAAGATTTTGATTTTKATTTTTCAATTTCAATGTTCCCATAACCGAGTTATTGGGTTTTCTTGACTATGTCTTATATATGTTTCCCCATAGGGTGGACCATCTGTCATTCTAATCTCACCTATCTATCTATCCTTCTTTCCCAAAGGTCCAGAGGTCAGAAAAATCAATAAGACTCATTCTTTGTCTATCCCCTCTATATATGGTCCCTTCATTTTTTTTTTCAGTATATACAATCCCCCACCGTCATGCCAATCAATCTACACCAATTTCCAAAGGAATTGATTCTGGAAGTTCTGAGAAACGTCGATCTTCGAGGATTGTGAGTTTTTTTCTCATTTTTCGTTGATTTTTAGTTAGAAATGATCAGATTTAGGTGTCTGTAAAATCACTGTATTCTTTTCCGTTTGGTTTGAAAATGTTGGGAACCAGTCGGTTTACGCCCTTCGTGGCTTAACCTCCTGGCCTCCGGTCGCCCTCCACCATCGCCATTTATGCACAACACCCTTTAGTGTGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTATTTTTCAGGTACACTTACG</pcr_primer_p1>
		<pcr_primer_p2>CTTATTGATTTTTCTGACCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTTATTTTTCAGGTACACTTACGCCTTGTTAAAAATATCTCAAAATTATGCCATAATGTCAAAAACTATAAAAAACTGTAAGATTTTGATTTTTATTTTTCAATTTCAATGTTCCCATAACCGAGTTATTGGGTTTTCTTGACTATGTCTTATATATGTTTCCCCATAGGGTGGACCATCTGTCATTCTAATCTCACCTATCTATCTATCCTTCTTTCCCAAAGGTCCAGAGGTCAGAAAAATCAATAAG</canonical_amplicon>
		<polymorphic_amplicon>TCTTATTTTTCAGGTACACTTACGCCTTGTTAAAAATATCTCAAAATTATGCCATAATGTCAAAAACTATAAAAAACTGTAAGATTTTGATTTTKATTTTTCAATTTCAATGTTCCCATAACCGAGTTATTGGGTTTTCTTGACTATGTCTTATATATGTTTCCCCATAGGGTGGACCATCTGTCATTCTAATCTCACCTATCTATCTATCCTTCTTTCCCAAAGGTCCAGAGGTCAGAAAAATCAATAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23187</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>425733</contig_pos>
        <strand>+</strand>
        <context>TCTGTTTCCA[C/T]AACGAAGCGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAAATACAATGAGAACCTTCCTCGCACCTCAGTGATCGTCTGTTTCCA</left_flank>
        <right_flank>AACGAAGCGTGGTCTGTCCTCCTCCGTACCGTCCATTCGGTTTTGGAACG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAAAAATGGCCCAAAGTAAGCTGAAAATGGCCTAAAAAGGCTTGAAATGGTTCAAAACTGTCTAAAAATGTCCAAAATTAGCCGAAAAAGGTCCAAAATTAGCCGAAAATGATCCAAAAATGGTCGAGAATAGGACGAAAATGATTCAAATTGACCCAAAATGGACCAAACATAATTCGAAATATGCTAAACAGCAGCCGAAAATTGTTCAGATTAGGCTTAAAATGCTCCAAAACATGCTAAAAATAATCGAAAATGGGCCAAAAATGGTTCAGAACAGCCTAAAAAAATGGACTTAAAACAAGCTTAAAATGGCTGAAATTAGCTTGAAAAATCGCATTTGTAACCTATTTTTGACTATTTTTTGCTATTTTTTCACTTAAAAATTACCCTATAATTACCCCTAATTACCCCCAATTAATTATATAAATTTTCCAGATGCAAAACGGAAAAATACAATGAGAACCTTCCTCGCACCTCAGTGATCGTCTGTTTCCACAACGAAGCGTGGTCTGTCCTCCTCCGTACCGTCCATTCGGTTTTGGAACGAACCCCAGAGCACCTTCTCGAAGAAATTGTCCTAGTCGACGATTTTTCGGATATGGACCATACGAAACGACCATTGGAGGAGTATATGTCACAGTTTGGGGGGAAGGTCAAGATTCTGAGAATGGAGAAACGAGAGGGATTGATTCGAGCACGTCTTCGAGGCGCTGCAATCGCTACCGGAGAGGTTCTGACGTATTTGGATTCACATTGCGAGTGTATGGAAGGTAAGAGAGTGGTGTTGGTCTTGAAAATTGTCTGAAAATGCTCAAAAATTGACGCTTAATCGTCTAGAAATGCTCAAATTTGGCTTAAAAAATAGACTAAAAATGTCCTGAAAACGCTTATAAATTGACTTAAAATCGTCTAAAAATCAGCTAACTTTTAGACCAAAATTGAGCAAAAATTAACGTAAAATAGTCGAAAAAATGGCTGAAAATGTCTTAAAATCCT</canonical>
            <polymorphic>CTAAAAATGGCCCAAAGTAAGCTGAAAATGGCCTAAAAAGGCTTGAAATGGTTCAAAACTGTCTAAAAATGTCCAAAATTAGCCGAAAAAGGTCCAAAATTAGCCGAAAATGATCCAAAAATGGTCGAGAATAGGACGAAAATGATTCAAATTGACCCAAAATGGACCAAACATAATTCGAAATATGCTAAACAGCAGCCGAAAATTGTTCAGATTAGGCTTAAAATGCTCCAAAACATGCTAAAAATAATCGAAAATGGGCCAAAAATGGTTCAGAACAGCCTAAAAAAATGGACTTAAAACAAGCTTAAAATGGCTGAAATTAGCTTGAAAAATCGCATTTGTAACCTATTTTTGACTATTTTTTGCTATTTTTTCACTTAAAAATTACCCTATAATTACCCCTAATTACCCCCAATTAATTATATAAATTTTCCAGATGCAAAACGGAAAAATACAATGAGAACCTTCCTCGCACCTCAGTGATCGTCTGTTTCCAYAACGAAGCGTGGTCTGTCCTCCTCCGTACCGTCCATTCGGTTTTGGAACGAACCCCAGAGCACCTTCTCGAAGAAATTGTCCTAGTCGACGATTTTTCGGATATGGACCATACGAAACGACCATTGGAGGAGTATATGTCACAGTTTGGGGGGAAGGTCAAGATTCTGAGAATGGAGAAACGAGAGGGATTGATTCGAGCACGTCTTCGAGGCGCTGCAATCGCTACCGGAGAGGTTCTGACGTATTTGGATTCACATTGCGAGTGTATGGAAGGTAAGAGAGTGGTGTTGGTCTTGAAAATTGTCTGAAAATGCTCAAAAATTGACGCTTAATCGTCTAGAAATGCTCAAATTTGGCTTAAAAAATAGACTAAAAATGTCCTGAAAACGCTTATAAATTGACTTAAAATCGTCTAAAAATCAGCTAACTTTTAGACCAAAATTGAGCAAAAATTAACGTAAAATAGTCGAAAAAATGGCTGAAAATGTCTTAAAATCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>379 212 98 79 60 54 51 19 14 12 11 8 3</canonical_bands>
                <polymorphic_bands>379 212 98 79 60 54 51 26 19 11 8 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACGGAAAAATACAATGAGAAC</pcr_primer_p1>
		<pcr_primer_p2>AATCAATCCCTCTCGTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACGGAAAAATACAATGAGAACCTTCCTCGCACCTCAGTGATCGTCTGTTTCCACAACGAAGCGTGGTCTGTCCTCCTCCGTACCGTCCATTCGGTTTTGGAACGAACCCCAGAGCACCTTCTCGAAGAAATTGTCCTAGTCGACGATTTTTCGGATATGGACCATACGAAACGACCATTGGAGGAGTATATGTCACAGTTTGGGGGGAAGGTCAAGATTCTGAGAATGGAGAAACGAGAGGGATTGATT</canonical_amplicon>
		<polymorphic_amplicon>AACGGAAAAATACAATGAGAACCTTCCTCGCACCTCAGTGATCGTCTGTTTCCAYAACGAAGCGTGGTCTGTCCTCCTCCGTACCGTCCATTCGGTTTTGGAACGAACCCCAGAGCACCTTCTCGAAGAAATTGTCCTAGTCGACGATTTTTCGGATATGGACCATACGAAACGACCATTGGAGGAGTATATGTCACAGTTTGGGGGGAAGGTCAAGATTCTGAGAATGGAGAAACGAGAGGGATTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23188</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>425886</contig_pos>
        <strand>+</strand>
        <context>AGTTTGGGGG[C/G]AAGGTCAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATGGACCATACGAAACGACCATTGGAGGAGTATATGTCACAGTTTGGGGG</left_flank>
        <right_flank>AAGGTCAAGATTCTGAGAATGGAGAAACGAGAGGGATTGATTCGAGCACG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACCCAAAATGGACCAAACATAATTCGAAATATGCTAAACAGCAGCCGAAAATTGTTCAGATTAGGCTTAAAATGCTCCAAAACATGCTAAAAATAATCGAAAATGGGCCAAAAATGGTTCAGAACAGCCTAAAAAAATGGACTTAAAACAAGCTTAAAATGGCTGAAATTAGCTTGAAAAATCGCATTTGTAACCTATTTTTGACTATTTTTTGCTATTTTTTCACTTAAAAATTACCCTATAATTACCCCTAATTACCCCCAATTAATTATATAAATTTTCCAGATGCAAAACGGAAAAATACAATGAGAACCTTCCTCGCACCTCAGTGATCGTCTGTTTCCACAACGAAGCGTGGTCTGTCCTCCTCCGTACCGTCCATTCGGTTTTGGAACGAACCCCAGAGCACCTTCTCGAAGAAATTGTCCTAGTCGACGATTTTTCGGATATGGACCATACGAAACGACCATTGGAGGAGTATATGTCACAGTTTGGGGGGAAGGTCAAGATTCTGAGAATGGAGAAACGAGAGGGATTGATTCGAGCACGTCTTCGAGGCGCTGCAATCGCTACCGGAGAGGTTCTGACGTATTTGGATTCACATTGCGAGTGTATGGAAGGTAAGAGAGTGGTGTTGGTCTTGAAAATTGTCTGAAAATGCTCAAAAATTGACGCTTAATCGTCTAGAAATGCTCAAATTTGGCTTAAAAAATAGACTAAAAATGTCCTGAAAACGCTTATAAATTGACTTAAAATCGTCTAAAAATCAGCTAACTTTTAGACCAAAATTGAGCAAAAATTAACGTAAAATAGTCGAAAAAATGGCTGAAAATGTCTTAAAATCCTGCTAATTTTATCCGGAAGAGTCTGAAAATTGGCTGAAAACTCAAAGTTTCGACTCGAAACTATCAAAATCGAGTTTCCCGTCACTTTTAACCGCTGCAAGCCAAATTTCAGCTCGCTAGCTCAATTTGTCGTAAAATTCGGTGCTTGGTCCGC</canonical>
            <polymorphic>GACCCAAAATGGACCAAACATAATTCGAAATATGCTAAACAGCAGCCGAAAATTGTTCAGATTAGGCTTAAAATGCTCCAAAACATGCTAAAAATAATCGAAAATGGGCCAAAAATGGTTCAGAACAGCCTAAAAAAATGGACTTAAAACAAGCTTAAAATGGCTGAAATTAGCTTGAAAAATCGCATTTGTAACCTATTTTTGACTATTTTTTGCTATTTTTTCACTTAAAAATTACCCTATAATTACCCCTAATTACCCCCAATTAATTATATAAATTTTCCAGATGCAAAACGGAAAAATACAATGAGAACCTTCCTCGCACCTCAGTGATCGTCTGTTTCCACAACGAAGCGTGGTCTGTCCTCCTCCGTACCGTCCATTCGGTTTTGGAACGAACCCCAGAGCACCTTCTCGAAGAAATTGTCCTAGTCGACGATTTTTCGGATATGGACCATACGAAACGACCATTGGAGGAGTATATGTCACAGTTTGGGGGSAAGGTCAAGATTCTGAGAATGGAGAAACGAGAGGGATTGATTCGAGCACGTCTTCGAGGCGCTGCAATCGCTACCGGAGAGGTTCTGACGTATTTGGATTCACATTGCGAGTGTATGGAAGGTAAGAGAGTGGTGTTGGTCTTGAAAATTGTCTGAAAATGCTCAAAAATTGACGCTTAATCGTCTAGAAATGCTCAAATTTGGCTTAAAAAATAGACTAAAAATGTCCTGAAAACGCTTATAAATTGACTTAAAATCGTCTAAAAATCAGCTAACTTTTAGACCAAAATTGAGCAAAAATTAACGTAAAATAGTCGAAAAAATGGCTGAAAATGTCTTAAAATCCTGCTAATTTTATCCGGAAGAGTCTGAAAATTGGCTGAAAACTCAAAGTTTCGACTCGAAACTATCAAAATCGAGTTTCCCGTCACTTTTAACCGCTGCAAGCCAAATTTCAGCTCGCTAGCTCAATTTGTCGTAAAATTCGGTGCTTGGTCCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTCGAAGAAATTGTCCTAGT</pcr_primer_p1>
		<pcr_primer_p2>AAGACCAACACCACTCTCTTAC</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>CTTCTCGAAGAAATTGTCCTAGTCGACGATTTTTCGGATATGGACCATACGAAACGACCATTGGAGGAGTATATGTCACAGTTTGGGGGGAAGGTCAAGATTCTGAGAATGGAGAAACGAGAGGGATTGATTCGAGCACGTCTTCGAGGCGCTGCAATCGCTACCGGAGAGGTTCTGACGTATTTGGATTCACATTGCGAGTGTATGGAAGGTAAGAGAGTGGTGTTGGTCTT</canonical_amplicon>
		<polymorphic_amplicon>CTTCTCGAAGAAATTGTCCTAGTCGACGATTTTTCGGATATGGACCATACGAAACGACCATTGGAGGAGTATATGTCACAGTTTGGGGGSAAGGTCAAGATTCTGAGAATGGAGAAACGAGAGGGATTGATTCGAGCACGTCTTCGAGGCGCTGCAATCGCTACCGGAGAGGTTCTGACGTATTTGGATTCACATTGCGAGTGTATGGAAGGTAAGAGAGTGGTGTTGGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23189</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>425901</contig_pos>
        <strand>+</strand>
        <context>TCAAGATTCT[A/G]AGAATGGAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGACCATTGGAGGAGTATATGTCACAGTTTGGGGGGAAGGTCAAGATTCT</left_flank>
        <right_flank>AGAATGGAGAAACGAGAGGGATTGATTCGAGCACGTCTTCGAGGCGCTGC</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACATAATTCGAAATATGCTAAACAGCAGCCGAAAATTGTTCAGATTAGGCTTAAAATGCTCCAAAACATGCTAAAAATAATCGAAAATGGGCCAAAAATGGTTCAGAACAGCCTAAAAAAATGGACTTAAAACAAGCTTAAAATGGCTGAAATTAGCTTGAAAAATCGCATTTGTAACCTATTTTTGACTATTTTTTGCTATTTTTTCACTTAAAAATTACCCTATAATTACCCCTAATTACCCCCAATTAATTATATAAATTTTCCAGATGCAAAACGGAAAAATACAATGAGAACCTTCCTCGCACCTCAGTGATCGTCTGTTTCCACAACGAAGCGTGGTCTGTCCTCCTCCGTACCGTCCATTCGGTTTTGGAACGAACCCCAGAGCACCTTCTCGAAGAAATTGTCCTAGTCGACGATTTTTCGGATATGGACCATACGAAACGACCATTGGAGGAGTATATGTCACAGTTTGGGGGGAAGGTCAAGATTCTGAGAATGGAGAAACGAGAGGGATTGATTCGAGCACGTCTTCGAGGCGCTGCAATCGCTACCGGAGAGGTTCTGACGTATTTGGATTCACATTGCGAGTGTATGGAAGGTAAGAGAGTGGTGTTGGTCTTGAAAATTGTCTGAAAATGCTCAAAAATTGACGCTTAATCGTCTAGAAATGCTCAAATTTGGCTTAAAAAATAGACTAAAAATGTCCTGAAAACGCTTATAAATTGACTTAAAATCGTCTAAAAATCAGCTAACTTTTAGACCAAAATTGAGCAAAAATTAACGTAAAATAGTCGAAAAAATGGCTGAAAATGTCTTAAAATCCTGCTAATTTTATCCGGAAGAGTCTGAAAATTGGCTGAAAACTCAAAGTTTCGACTCGAAACTATCAAAATCGAGTTTCCCGTCACTTTTAACCGCTGCAAGCCAAATTTCAGCTCGCTAGCTCAATTTGTCGTAAAATTCGGTGCTTGGTCCGCAAACACTTTGATCTG</canonical>
            <polymorphic>AAACATAATTCGAAATATGCTAAACAGCAGCCGAAAATTGTTCAGATTAGGCTTAAAATGCTCCAAAACATGCTAAAAATAATCGAAAATGGGCCAAAAATGGTTCAGAACAGCCTAAAAAAATGGACTTAAAACAAGCTTAAAATGGCTGAAATTAGCTTGAAAAATCGCATTTGTAACCTATTTTTGACTATTTTTTGCTATTTTTTCACTTAAAAATTACCCTATAATTACCCCTAATTACCCCCAATTAATTATATAAATTTTCCAGATGCAAAACGGAAAAATACAATGAGAACCTTCCTCGCACCTCAGTGATCGTCTGTTTCCACAACGAAGCGTGGTCTGTCCTCCTCCGTACCGTCCATTCGGTTTTGGAACGAACCCCAGAGCACCTTCTCGAAGAAATTGTCCTAGTCGACGATTTTTCGGATATGGACCATACGAAACGACCATTGGAGGAGTATATGTCACAGTTTGGGGGGAAGGTCAAGATTCTRAGAATGGAGAAACGAGAGGGATTGATTCGAGCACGTCTTCGAGGCGCTGCAATCGCTACCGGAGAGGTTCTGACGTATTTGGATTCACATTGCGAGTGTATGGAAGGTAAGAGAGTGGTGTTGGTCTTGAAAATTGTCTGAAAATGCTCAAAAATTGACGCTTAATCGTCTAGAAATGCTCAAATTTGGCTTAAAAAATAGACTAAAAATGTCCTGAAAACGCTTATAAATTGACTTAAAATCGTCTAAAAATCAGCTAACTTTTAGACCAAAATTGAGCAAAAATTAACGTAAAATAGTCGAAAAAATGGCTGAAAATGTCTTAAAATCCTGCTAATTTTATCCGGAAGAGTCTGAAAATTGGCTGAAAACTCAAAGTTTCGACTCGAAACTATCAAAATCGAGTTTCCCGTCACTTTTAACCGCTGCAAGCCAAATTTCAGCTCGCTAGCTCAATTTGTCGTAAAATTCGGTGCTTGGTCCGCAAACACTTTGATCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>324 216 145 72 68 68 63 44</canonical_bands>
                <polymorphic_bands>324 216 145 140 68 63 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCTCGAAGAAATTGTCCTAGT</pcr_primer_p1>
		<pcr_primer_p2>AAGACCAACACCACTCTCTTAC</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>CTTCTCGAAGAAATTGTCCTAGTCGACGATTTTTCGGATATGGACCATACGAAACGACCATTGGAGGAGTATATGTCACAGTTTGGGGGGAAGGTCAAGATTCTGAGAATGGAGAAACGAGAGGGATTGATTCGAGCACGTCTTCGAGGCGCTGCAATCGCTACCGGAGAGGTTCTGACGTATTTGGATTCACATTGCGAGTGTATGGAAGGTAAGAGAGTGGTGTTGGTCTT</canonical_amplicon>
		<polymorphic_amplicon>CTTCTCGAAGAAATTGTCCTAGTCGACGATTTTTCGGATATGGACCATACGAAACGACCATTGGAGGAGTATATGTCACAGTTTGGGGGGAAGGTCAAGATTCTRAGAATGGAGAAACGAGAGGGATTGATTCGAGCACGTCTTCGAGGCGCTGCAATCGCTACCGGAGAGGTTCTGACGTATTTGGATTCACATTGCGAGTGTATGGAAGGTAAGAGAGTGGTGTTGGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23201</snp_id>
        <super_contig>c014301193.Contig1</super_contig>
        <contig_pos>9149</contig_pos>
        <strand>+</strand>
        <context>RCAKWAAAAA[A/G]TTGTGAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAA</left_flank>
        <right_flank>TTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAAAAATTACTTTTTCTATTGAAACTTTGCATCCTTTTCAGAGATTTCATATTTTGCAAAACTTTCTAGAATTCTCGATTTCCTTTCACCACGTCTTCTCTCCCCACTAATTCAAAGATGTCATCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGATTAAAATAGCCTCAAAATGCTGAAAATCGATTTGAAGTATCAAAAAGCTTTGAGAAACTTCTAGATCATTCCAGATCTTCAACATGGTTACAGATTTTTAATTTTCCAATTGTTTTTTTTTCAGACGAAAACGAGCAATCTTCTTGTTGACATGCTCTTGGATACTTGGTCTTCTGGTCGCGATCCTACCACTTTTCAATGTTTTTGGGTTTGCTGAGTGAGTTGTTTTTTGAATTGGGAGATTTTTGGACTTTTAAATTATGAAAATTAAAAAGAGGACTTAAAATTTTAAATGTGTGTTTCAGAGTTAGCAAATTAAAAAAATAAACTTTAAAAAATCCGAATTCCCAAATGTTCGGAATTCCGAGGTTTTCAATTTTTCAATTTTTATAATTTTCCCAGAATTTCGGAGTATTTAAGAATTTGACAAATTTGAACTTTAG</canonical>
            <polymorphic>GAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAAAAATTACTTTTTCTATTGAAACTTTGCATCCTTTTCAGAGATTTCATATTTTGCAAAACTTTCTAGAATTCTCGATTTCCTTTCACCACGTCTTCTCTCCCCACTAATTCAAAGATGTCATCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAARTTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGATTAAAATAGCCTCAAAATGCTGAAAATCGATTTGAAGTATCAAAAAGCTTTGAGAAACTTCTAGATCATTCCAGATCTTCAACATGGTTACAGATTTTTAATTTTCCAATTGTTTTTTTTTCAGACGAAAACGAGCAATCTTCTTGTTGACATGCTCTTGGATACTTGGTCTTCTGGTCGCGATCCTACCACTTTTCAATGTTTTTGGGTTTGCTGAGTGAGTTGTTTTTTGAATTGGGAGATTTTTGGACTTTTAAATTATGAAAATTAAAAAGAGGACTTAAAATTTTAAATGTGTGTTTCAGAGTTAGCAAATTAAAAAAATAAACTTTAAAAAATCCGAATTCCCAAATGTTCGGAATTCCGAGGTTTTCAATTTTTCAATTTTTATAATTTTCCCAGAATTTCGGAGTATTTAAGAATTTGACAAATTTGAACTTTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>149 125 92 65 62 49 40 39 39 33 29 29 24 19 19 18 17 16 15 14 11 10 9 9 9 9 9 9 8 8 6 6 4</canonical_bands>
                <polymorphic_bands>149 125 92 65 62 49 49 39 39 33 29 29 24 19 19 18 17 16 15 14 11 10 9 9 9 9 9 8 8 6 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGGATGAGAATCTAAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>TCCATTTTCTCAATATTTCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGA</canonical_amplicon>
		<polymorphic_amplicon>TCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAARTTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23202</snp_id>
        <super_contig>c014301193.Contig1</super_contig>
        <contig_pos>9143</contig_pos>
        <strand>+</strand>
        <context>TATCCARCAK[A/T]AAAAARTTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACAT</left_flank>
        <right_flank>AAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAAAAATTACTTTTTCTATTGAAACTTTGCATCCTTTTCAGAGATTTCATATTTTGCAAAACTTTCTAGAATTCTCGATTTCCTTTCACCACGTCTTCTCTCCCCACTAATTCAAAGATGTCATCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGATTAAAATAGCCTCAAAATGCTGAAAATCGATTTGAAGTATCAAAAAGCTTTGAGAAACTTCTAGATCATTCCAGATCTTCAACATGGTTACAGATTTTTAATTTTCCAATTGTTTTTTTTTCAGACGAAAACGAGCAATCTTCTTGTTGACATGCTCTTGGATACTTGGTCTTCTGGTCGCGATCCTACCACTTTTCAATGTTTTTGGGTTTGCTGAGTGAGTTGTTTTTTGAATTGGGAGATTTTTGGACTTTTAAATTATGAAAATTAAAAAGAGGACTTAAAATTTTAAATGTGTGTTTCAGAGTTAGCAAATTAAAAAAATAAACTTTAAAAAATCCGAATTCCCAAATGTTCGGAATTCCGAGGTTTTCAATTTTTCAATTTTTATAATTTTCCCAGAATTTCGGAGTATTTAAGAATTTGACAAATTTGAA</canonical>
            <polymorphic>AAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAAAAATTACTTTTTCTATTGAAACTTTGCATCCTTTTCAGAGATTTCATATTTTGCAAAACTTTCTAGAATTCTCGATTTCCTTTCACCACGTCTTCTCTCCCCACTAATTCAAAGATGTCATCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATWAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGATTAAAATAGCCTCAAAATGCTGAAAATCGATTTGAAGTATCAAAAAGCTTTGAGAAACTTCTAGATCATTCCAGATCTTCAACATGGTTACAGATTTTTAATTTTCCAATTGTTTTTTTTTCAGACGAAAACGAGCAATCTTCTTGTTGACATGCTCTTGGATACTTGGTCTTCTGGTCGCGATCCTACCACTTTTCAATGTTTTTGGGTTTGCTGAGTGAGTTGTTTTTTGAATTGGGAGATTTTTGGACTTTTAAATTATGAAAATTAAAAAGAGGACTTAAAATTTTAAATGTGTGTTTCAGAGTTAGCAAATTAAAAAAATAAACTTTAAAAAATCCGAATTCCCAAATGTTCGGAATTCCGAGGTTTTCAATTTTTCAATTTTTATAATTTTCCCAGAATTTCGGAGTATTTAAGAATTTGACAAATTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGGATGAGAATCTAAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>TCCATTTTCTCAATATTTCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGA</canonical_amplicon>
		<polymorphic_amplicon>TCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATWAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23203</snp_id>
        <super_contig>c014301193.Contig1</super_contig>
        <contig_pos>9142</contig_pos>
        <strand></strand>
        <context>TTATCCARCA[T/G]WAAAAARTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACA</left_flank>
        <right_flank>AAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAAT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAAAAATTACTTTTTCTATTGAAACTTTGCATCCTTTTCAGAGATTTCATATTTTGCAAAACTTTCTAGAATTCTCGATTTCCTTTCACCACGTCTTCTCTCCCCACTAATTCAAAGATGTCATCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGATTAAAATAGCCTCAAAATGCTGAAAATCGATTTGAAGTATCAAAAAGCTTTGAGAAACTTCTAGATCATTCCAGATCTTCAACATGGTTACAGATTTTTAATTTTCCAATTGTTTTTTTTTCAGACGAAAACGAGCAATCTTCTTGTTGACATGCTCTTGGATACTTGGTCTTCTGGTCGCGATCCTACCACTTTTCAATGTTTTTGGGTTTGCTGAGTGAGTTGTTTTTTGAATTGGGAGATTTTTGGACTTTTAAATTATGAAAATTAAAAAGAGGACTTAAAATTTTAAATGTGTGTTTCAGAGTTAGCAAATTAAAAAAATAAACTTTAAAAAATCCGAATTCCCAAATGTTCGGAATTCCGAGGTTTTCAATTTTTCAATTTTTATAATTTTCCCAGAATTTCGGAGTATTTAAGAATTTGACAAATTTGA</canonical>
            <polymorphic>AAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAAAAATTACTTTTTCTATTGAAACTTTGCATCCTTTTCAGAGATTTCATATTTTGCAAAACTTTCTAGAATTCTCGATTTCCTTTCACCACGTCTTCTCTCCCCACTAATTCAAAGATGTCATCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACAKAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGATTAAAATAGCCTCAAAATGCTGAAAATCGATTTGAAGTATCAAAAAGCTTTGAGAAACTTCTAGATCATTCCAGATCTTCAACATGGTTACAGATTTTTAATTTTCCAATTGTTTTTTTTTCAGACGAAAACGAGCAATCTTCTTGTTGACATGCTCTTGGATACTTGGTCTTCTGGTCGCGATCCTACCACTTTTCAATGTTTTTGGGTTTGCTGAGTGAGTTGTTTTTTGAATTGGGAGATTTTTGGACTTTTAAATTATGAAAATTAAAAAGAGGACTTAAAATTTTAAATGTGTGTTTCAGAGTTAGCAAATTAAAAAAATAAACTTTAAAAAATCCGAATTCCCAAATGTTCGGAATTCCGAGGTTTTCAATTTTTCAATTTTTATAATTTTCCCAGAATTTCGGAGTATTTAAGAATTTGACAAATTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGGATGAGAATCTAAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>TCCATTTTCTCAATATTTCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGA</canonical_amplicon>
		<polymorphic_amplicon>TCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACAKAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23204</snp_id>
        <super_contig>c014301193.Contig1</super_contig>
        <contig_pos>9139</contig_pos>
        <strand>+</strand>
        <context>ATCTTATCCA[A/G]CAKWAAAAAR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCA</left_flank>
        <right_flank>CATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAAAAATTACTTTTTCTATTGAAACTTTGCATCCTTTTCAGAGATTTCATATTTTGCAAAACTTTCTAGAATTCTCGATTTCCTTTCACCACGTCTTCTCTCCCCACTAATTCAAAGATGTCATCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGATTAAAATAGCCTCAAAATGCTGAAAATCGATTTGAAGTATCAAAAAGCTTTGAGAAACTTCTAGATCATTCCAGATCTTCAACATGGTTACAGATTTTTAATTTTCCAATTGTTTTTTTTTCAGACGAAAACGAGCAATCTTCTTGTTGACATGCTCTTGGATACTTGGTCTTCTGGTCGCGATCCTACCACTTTTCAATGTTTTTGGGTTTGCTGAGTGAGTTGTTTTTTGAATTGGGAGATTTTTGGACTTTTAAATTATGAAAATTAAAAAGAGGACTTAAAATTTTAAATGTGTGTTTCAGAGTTAGCAAATTAAAAAAATAAACTTTAAAAAATCCGAATTCCCAAATGTTCGGAATTCCGAGGTTTTCAATTTTTCAATTTTTATAATTTTCCCAGAATTTCGGAGTATTTAAGAATTTGACAAATT</canonical>
            <polymorphic>AAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAAAAATTACTTTTTCTATTGAAACTTTGCATCCTTTTCAGAGATTTCATATTTTGCAAAACTTTCTAGAATTCTCGATTTCCTTTCACCACGTCTTCTCTCCCCACTAATTCAAAGATGTCATCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCARCATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGATTAAAATAGCCTCAAAATGCTGAAAATCGATTTGAAGTATCAAAAAGCTTTGAGAAACTTCTAGATCATTCCAGATCTTCAACATGGTTACAGATTTTTAATTTTCCAATTGTTTTTTTTTCAGACGAAAACGAGCAATCTTCTTGTTGACATGCTCTTGGATACTTGGTCTTCTGGTCGCGATCCTACCACTTTTCAATGTTTTTGGGTTTGCTGAGTGAGTTGTTTTTTGAATTGGGAGATTTTTGGACTTTTAAATTATGAAAATTAAAAAGAGGACTTAAAATTTTAAATGTGTGTTTCAGAGTTAGCAAATTAAAAAAATAAACTTTAAAAAATCCGAATTCCCAAATGTTCGGAATTCCGAGGTTTTCAATTTTTCAATTTTTATAATTTTCCCAGAATTTCGGAGTATTTAAGAATTTGACAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGGATGAGAATCTAAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>TCCATTTTCTCAATATTTCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGA</canonical_amplicon>
		<polymorphic_amplicon>TCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCARCATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23205</snp_id>
        <super_contig>c014301193.Contig1</super_contig>
        <contig_pos>9116</contig_pos>
        <strand>+</strand>
        <context>CRAATTTATT[C/T]AAAGGGAACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATT</left_flank>
        <right_flank>AAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAAAAATTACTTTTTCTATTGAAACTTTGCATCCTTTTCAGAGATTTCATATTTTGCAAAACTTTCTAGAATTCTCGATTTCCTTTCACCACGTCTTCTCTCCCCACTAATTCAAAGATGTCATCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGATTAAAATAGCCTCAAAATGCTGAAAATCGATTTGAAGTATCAAAAAGCTTTGAGAAACTTCTAGATCATTCCAGATCTTCAACATGGTTACAGATTTTTAATTTTCCAATTGTTTTTTTTTCAGACGAAAACGAGCAATCTTCTTGTTGACATGCTCTTGGATACTTGGTCTTCTGGTCGCGATCCTACCACTTTTCAATGTTTTTGGGTTTGCTGAGTGAGTTGTTTTTTGAATTGGGAGATTTTTGGACTTTTAAATTATGAAAATTAAAAAGAGGACTTAAAATTTTAAATGTGTGTTTCAGAGTTAGCAAATTAAAAAAATAAACTTTAAAAAATCCGAATTCCCAAATGTTCGGAATTCCGAGGTTTTCAATTTTTCAATTTTTATAATTTTCCCAGAATTTCGG</canonical>
            <polymorphic>ATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAAAAATTACTTTTTCTATTGAAACTTTGCATCCTTTTCAGAGATTTCATATTTTGCAAAACTTTCTAGAATTCTCGATTTCCTTTCACCACGTCTTCTCTCCCCACTAATTCAAAGATGTCATCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTYAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGATTAAAATAGCCTCAAAATGCTGAAAATCGATTTGAAGTATCAAAAAGCTTTGAGAAACTTCTAGATCATTCCAGATCTTCAACATGGTTACAGATTTTTAATTTTCCAATTGTTTTTTTTTCAGACGAAAACGAGCAATCTTCTTGTTGACATGCTCTTGGATACTTGGTCTTCTGGTCGCGATCCTACCACTTTTCAATGTTTTTGGGTTTGCTGAGTGAGTTGTTTTTTGAATTGGGAGATTTTTGGACTTTTAAATTATGAAAATTAAAAAGAGGACTTAAAATTTTAAATGTGTGTTTCAGAGTTAGCAAATTAAAAAAATAAACTTTAAAAAATCCGAATTCCCAAATGTTCGGAATTCCGAGGTTTTCAATTTTTCAATTTTTATAATTTTCCCAGAATTTCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGGATGAGAATCTAAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>TCCATTTTCTCAATATTTCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGA</canonical_amplicon>
		<polymorphic_amplicon>TCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTYAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23207</snp_id>
        <super_contig>c014301193.Contig1</super_contig>
        <contig_pos>8730</contig_pos>
        <strand>+</strand>
        <context>AATYCTCTTA[A/C]AATTCCTWAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTA</left_flank>
        <right_flank>AATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGAAATTCTGAGGAATTCAGAAATTCGAAAATCCAGAAATTCTGATAAATTCTGAAATTCTGAAATTCTGAAATTTAGAAATTCAGAAATCCAGAAATTCTGAAATTCTGAAGTTCAGAAATTCGAGATTTCTGTAATTCTGAAACTTTTAAATTCTGAAATATTTAAGCTTTTAAAAATTCGAAATTTCGGAATTCTGGATTTCTTGAATTTTGGAATTCCGATATTCTTTTAAATTTGAAAAATTCTCGAATTCCGAAGATTAAAAATTTTAAACTTCTGAAGTTTTTTAGATTTTTAATTTTTTCTCAGCATTTTCAAATAACATTCGATATTCAAAAAATTAGAATTCCAGAATTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAAAAATTACTTTTTCTATTGAAACTTTGCATCCTTTTCAGAGATTTCATATTTTGCAAAACTTTCTAGAATTCTCGATTTCCTTTCACCACGTCTTCTCTCCCCACTAATTCAAAGATGTCATCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGATTAAAATAGCCTCAAAATGCTGAA</canonical>
            <polymorphic>TCAGAAATTCTGAGGAATTCAGAAATTCGAAAATCCAGAAATTCTGATAAATTCTGAAATTCTGAAATTCTGAAATTTAGAAATTCAGAAATCCAGAAATTCTGAAATTCTGAAGTTCAGAAATTCGAGATTTCTGTAATTCTGAAACTTTTAAATTCTGAAATATTTAAGCTTTTAAAAATTCGAAATTTCGGAATTCTGGATTTCTTGAATTTTGGAATTCCGATATTCTTTTAAATTTGAAAAATTCTCGAATTCCGAAGATTAAAAATTTTAAACTTCTGAAGTTTTTTAGATTTTTAATTTTTTCTCAGCATTTTCAAATAACATTCGATATTCAAAAAATTAGAATTCCAGAATTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAMAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAAAAATTACTTTTTCTATTGAAACTTTGCATCCTTTTCAGAGATTTCATATTTTGCAAAACTTTCTAGAATTCTCGATTTCCTTTCACCACGTCTTCTCTCCCCACTAATTCAAAGATGTCATCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGATTAAAATAGCCTCAAAATGCTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>173 123 110 94 80 33 32 32 26 19 19 18 16 16 16 16 16 10 10 10 9 9 8 8 8 8 8 8 8 8 8 8 8 7 7 6 5</canonical_bands>
                <polymorphic_bands>192 123 110 94 80 33 32 32 26 19 18 16 16 16 16 16 10 10 10 9 9 8 8 8 8 8 8 8 8 8 8 8 7 7 6 5</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>480 197 151 59 31 26 23 16 9 8</canonical_bands>
                <polymorphic_bands>677 151 59 31 26 23 16 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAATTCATGTTTAGCAATA</pcr_primer_p1>
		<pcr_primer_p2>TTAGTGGAACAAGACATCAGACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAA</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAMAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23208</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>55945</contig_pos>
        <strand>+</strand>
        <context>GCGTTCACTG[A/G]AATGTTATTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTTGATTCTTGGTTCATATACATATTGGTGTCCAAAAGAGCGTTCACTG</left_flank>
        <right_flank>AATGTTATTAAAATTGACCCGTGCACTATTTGGTTATCAAAAATTGATAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAGGAGATGGAATGGAAGAAAGAAGAATTCCAAGAAGCGAAGAAAATTGGAAAAAAAGAAGAAGGTGGTGGGGGGGATTAGGTTGAATAGGTTCAAGTGGAGTGAAGGGGGACTTAGAGTCAGAACGGTGCTAGTAGGACATGCGTACTTGTAATATGAGGGATGAGAAAATAGAATAACTAAGAAGATGAGTTCTAATAGAAAGTTCTAGAAAGGTTCAAGGAATTGTTAATGAGGGATATGTTCAAAGTGTTAGAATGGATGGTAACTTTGATCCCATATATCTAAGTTCCTGTAAAAGATATCGAAAAATAGTCGACTGACAAAATGTTTATCAGAATATCACCAATATTTTATCAATTGACAAGTTTTTGATATCCCTTACAGAAATCGAGATAATTGAGATCAAAGTTAATGAGTTGGGAGGGCTTTTACATATCAGAGGAACGTTGATTCTTGGTTCATATACATATTGGTGTCCAAAAGAGCGTTCACTGGAATGTTATTAAAATTGACCCGTGCACTATTTGGTTATCAAAAATTGATATTGTGATAAATGTAGGCCGGATGTCGTGCCTCAGGCTTTTAACATCGAGACGCTACCGTAAAACATGTGCCACCTACACCGCCGACTTTGAGCCTATATATCTCGGTTCCTGTACGACATATCAAAAAGTGATCAACTGATAAAATCTTTGTGATATTATGATAAACATTTTGTCAGTTAACAACTTTTTGATATCTTTCACAGCAACCGAGATATATAGACTCAAAGTTTGATGGTCCCTGGCCACTAGCTTGTTACCTTGGTGCCAAAATTATGATTAGCTTTCCTTCAAATTGCCCTCAGAACTCGATCCACCTAGTCTCTGATCTTCCAATCTTCTAAACTTCACCTGTCGTCGACCTCTACTCGTACTCACAACAACATCTCCAAACTTTTCAGAAATTCTAAAAAATCCCATGAAAAATTCACAAATTCTCTCTTCTCTCTCATC</canonical>
            <polymorphic>TGGAGGAGATGGAATGGAAGAAAGAAGAATTCCAAGAAGCGAAGAAAATTGGAAAAAAAGAAGAAGGTGGTGGGGGGGATTAGGTTGAATAGGTTCAAGTGGAGTGAAGGGGGACTTAGAGTCAGAACGGTGCTAGTAGGACATGCGTACTTGTAATATGAGGGATGAGAAAATAGAATAACTAAGAAGATGAGTTCTAATAGAAAGTTCTAGAAAGGTTCAAGGAATTGTTAATGAGGGATATGTTCAAAGTGTTAGAATGGATGGTAACTTTGATCCCATATATCTAAGTTCCTGTAAAAGATATCGAAAAATAGTCGACTGACAAAATGTTTATCAGAATATCACCAATATTTTATCAATTGACAAGTTTTTGATATCCCTTACAGAAATCGAGATAATTGAGATCAAAGTTAATGAGTTGGGAGGGCTTTTACATATCAGAGGAACGTTGATTCTTGGTTCATATACATATTGGTGTCCAAAAGAGCGTTCACTGRAATGTTATTAAAATTGACCCGTGCACTATTTGGTTATCAAAAATTGATATTGTGATAAATGTAGGCCGGATGTCGTGCCTCAGGCTTTTAACATCGAGACGCTACCGTAAAACATGTGCCACCTACACCGCCGACTTTGAGCCTATATATCTCGGTTCCTGTACGACATATCAAAAAGTGATCAACTGATAAAATCTTTGTGATATTATGATAAACATTTTGTCAGTTAACAACTTTTTGATATCTTTCACAGCAACCGAGATATATAGACTCAAAGTTTGATGGTCCCTGGCCACTAGCTTGTTACCTTGGTGCCAAAATTATGATTAGCTTTCCTTCAAATTGCCCTCAGAACTCGATCCACCTAGTCTCTGATCTTCCAATCTTCTAAACTTCACCTGTCGTCGACCTCTACTCGTACTCACAACAACATCTCCAAACTTTTCAGAAATTCTAAAAAATCCCATGAAAAATTCACAAATTCTCTCTTCTCTCTCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACATATCAGAGGAACGTTGATT</pcr_primer_p1>
		<pcr_primer_p2>GGCCTACATTTATCACAATATCA</pcr_primer_p2>
		<pcr_amplicon_size>133</pcr_amplicon_size>
		<canonical_amplicon>TACATATCAGAGGAACGTTGATTCTTGGTTCATATACATATTGGTGTCCAAAAGAGCGTTCACTGGAATGTTATTAAAATTGACCCGTGCACTATTTGGTTATCAAAAATTGATATTGTGATAAATGTAGGCC</canonical_amplicon>
		<polymorphic_amplicon>TACATATCAGAGGAACGTTGATTCTTGGTTCATATACATATTGGTGTCCAAAAGAGCGTTCACTGRAATGTTATTAAAATTGACCCGTGCACTATTTGGTTATCAAAAATTGATATTGTGATAAATGTAGGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23209</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>56029</contig_pos>
        <strand>+</strand>
        <context>CGTGCCTCAG[A/G]CTTTTAACAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATCAAAAATTGATATTGTGATAAATGTAGGCCGGATGTCGTGCCTCAG</left_flank>
        <right_flank>CTTTTAACATCGAGACGCTACCGTAAAACATGTGCCACCTACACCGCCGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAATAGGTTCAAGTGGAGTGAAGGGGGACTTAGAGTCAGAACGGTGCTAGTAGGACATGCGTACTTGTAATATGAGGGATGAGAAAATAGAATAACTAAGAAGATGAGTTCTAATAGAAAGTTCTAGAAAGGTTCAAGGAATTGTTAATGAGGGATATGTTCAAAGTGTTAGAATGGATGGTAACTTTGATCCCATATATCTAAGTTCCTGTAAAAGATATCGAAAAATAGTCGACTGACAAAATGTTTATCAGAATATCACCAATATTTTATCAATTGACAAGTTTTTGATATCCCTTACAGAAATCGAGATAATTGAGATCAAAGTTAATGAGTTGGGAGGGCTTTTACATATCAGAGGAACGTTGATTCTTGGTTCATATACATATTGGTGTCCAAAAGAGCGTTCACTGGAATGTTATTAAAATTGACCCGTGCACTATTTGGTTATCAAAAATTGATATTGTGATAAATGTAGGCCGGATGTCGTGCCTCAGGCTTTTAACATCGAGACGCTACCGTAAAACATGTGCCACCTACACCGCCGACTTTGAGCCTATATATCTCGGTTCCTGTACGACATATCAAAAAGTGATCAACTGATAAAATCTTTGTGATATTATGATAAACATTTTGTCAGTTAACAACTTTTTGATATCTTTCACAGCAACCGAGATATATAGACTCAAAGTTTGATGGTCCCTGGCCACTAGCTTGTTACCTTGGTGCCAAAATTATGATTAGCTTTCCTTCAAATTGCCCTCAGAACTCGATCCACCTAGTCTCTGATCTTCCAATCTTCTAAACTTCACCTGTCGTCGACCTCTACTCGTACTCACAACAACATCTCCAAACTTTTCAGAAATTCTAAAAAATCCCATGAAAAATTCACAAATTCTCTCTTCTCTCTCATCCAACTAACTCCAAATTCAACCCGATCTCATCACCGCAGTGCCAATCTCTGGTGCCTTATATGGTTGGGACCCATCTCTTGATGA</canonical>
            <polymorphic>TTGAATAGGTTCAAGTGGAGTGAAGGGGGACTTAGAGTCAGAACGGTGCTAGTAGGACATGCGTACTTGTAATATGAGGGATGAGAAAATAGAATAACTAAGAAGATGAGTTCTAATAGAAAGTTCTAGAAAGGTTCAAGGAATTGTTAATGAGGGATATGTTCAAAGTGTTAGAATGGATGGTAACTTTGATCCCATATATCTAAGTTCCTGTAAAAGATATCGAAAAATAGTCGACTGACAAAATGTTTATCAGAATATCACCAATATTTTATCAATTGACAAGTTTTTGATATCCCTTACAGAAATCGAGATAATTGAGATCAAAGTTAATGAGTTGGGAGGGCTTTTACATATCAGAGGAACGTTGATTCTTGGTTCATATACATATTGGTGTCCAAAAGAGCGTTCACTGGAATGTTATTAAAATTGACCCGTGCACTATTTGGTTATCAAAAATTGATATTGTGATAAATGTAGGCCGGATGTCGTGCCTCAGRCTTTTAACATCGAGACGCTACCGTAAAACATGTGCCACCTACACCGCCGACTTTGAGCCTATATATCTCGGTTCCTGTACGACATATCAAAAAGTGATCAACTGATAAAATCTTTGTGATATTATGATAAACATTTTGTCAGTTAACAACTTTTTGATATCTTTCACAGCAACCGAGATATATAGACTCAAAGTTTGATGGTCCCTGGCCACTAGCTTGTTACCTTGGTGCCAAAATTATGATTAGCTTTCCTTCAAATTGCCCTCAGAACTCGATCCACCTAGTCTCTGATCTTCCAATCTTCTAAACTTCACCTGTCGTCGACCTCTACTCGTACTCACAACAACATCTCCAAACTTTTCAGAAATTCTAAAAAATCCCATGAAAAATTCACAAATTCTCTCTTCTCTCTCATCCAACTAACTCCAAATTCAACCCGATCTCATCACCGCAGTGCCAATCTCTGGTGCCTTATATGGTTGGGACCCATCTCTTGATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCTNAGG</site>
                <isoschizomers>
                    <enzyme>AocI</enzyme>
                    <enzyme>AxyI</enzyme>
                    <enzyme>Bse21I</enzyme>
                    <enzyme>Bsu36I</enzyme>
                    <enzyme>CvnI</enzyme>
                    <enzyme>Eco81I</enzyme>
                    <enzyme>SauI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>346 254 151 135 57 31 19 7</canonical_bands>
                <polymorphic_bands>346 254 151 135 76 31 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTGCACTATTTGGTTATCA</pcr_primer_p1>
		<pcr_primer_p2>ATAATTTTGGCACCAAGGTA</pcr_primer_p2>
		<pcr_amplicon_size>305</pcr_amplicon_size>
		<canonical_amplicon>CGTGCACTATTTGGTTATCAAAAATTGATATTGTGATAAATGTAGGCCGGATGTCGTGCCTCAGGCTTTTAACATCGAGACGCTACCGTAAAACATGTGCCACCTACACCGCCGACTTTGAGCCTATATATCTCGGTTCCTGTACGACATATCAAAAAGTGATCAACTGATAAAATCTTTGTGATATTATGATAAACATTTTGTCAGTTAACAACTTTTTGATATCTTTCACAGCAACCGAGATATATAGACTCAAAGTTTGATGGTCCCTGGCCACTAGCTTGTTACCTTGGTGCCAAAATTAT</canonical_amplicon>
		<polymorphic_amplicon>CGTGCACTATTTGGTTATCAAAAATTGATATTGTGATAAATGTAGGCCGGATGTCGTGCCTCAGRCTTTTAACATCGAGACGCTACCGTAAAACATGTGCCACCTACACCGCCGACTTTGAGCCTATATATCTCGGTTCCTGTACGACATATCAAAAAGTGATCAACTGATAAAATCTTTGTGATATTATGATAAACATTTTGTCAGTTAACAACTTTTTGATATCTTTCACAGCAACCGAGATATATAGACTCAAAGTTTGATGGTCCCTGGCCACTAGCTTGTTACCTTGGTGCCAAAATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23210</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>58655</contig_pos>
        <strand>+</strand>
        <context>AGATTTATGG[A/G]CCAGATTTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTGGACAACAACTGCGCGTGTTTTTGAGAATTTAGATTAGATTTATGG</left_flank>
        <right_flank>CCAGATTTATAAAATCTGTTGTTATGATCTCAAGGGAACCTAACCTTTAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTGGCACTCTATTAGTGTGCTACGAACATTTCTTTCCCATTCAACTAGTCTCGCTTTCTCTTTTCACACCCATTTTTCCAGTTCGTAAAGCAATCTAGACACTCGCGTCCCAATAGAAAAAAAGCTCTCCCGATTTAGTATATAAGTGCTCAGTGAGCTGCCTATTTTTGTCCTTTTCTCCTTCAAGGGGTCCCAAAAGTATCTGTTTTCAAGTCATTGAAAAAAAGTGATGAGGCGCGTGGATGATGTCATTATTTTTCGAAGATTTCGAATTCGAAGAAGTGGGGACTAAACCCAGCTATTAAGAATGAGTGGCTTTTCTTATGATGAATTTGAAAAACAACAAACAACTGCAAATTGATGGGTTGAACAAGTCTGGAGACGCTCTGAAAATAAGAGGAATCTGTAATTTGATATGTAGTTCTTGTAGTGTGTTGTCGCGAGTTGAAAGTGGACAACAACTGCGCGTGTTTTTGAGAATTTAGATTAGATTTATGGGCCAGATTTATAAAATCTGTTGTTATGATCTCAAGGGAACCTAACCTTTAACTTTGAGCCAATTTATCTCGATTCCTATGGTATATATGAAAAAGTAATCAACTGGTAAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACAGATTTTTCATATTTTGCTTAGGAGCCAAGATAAATCAACTCAAACTTGGCAGTGTAGAAACCCGGGAACGGTTACCGTGAACAGAGTACGCCACCCATTGCTTGCAATTTCAGCTCTATTATCTTGGTTCTTGTAAAAGATATCAAGAATTAGTCAAGTGATAAAATATTGTTGATATTATGATAAACAATTTATTAGTTGACAAACTTTTGATATCTCTTATAAGAACGGAGATAATGGATCTCAAAGTGAATGGTTTGTGGGACAACGTAATTGGGATCAAAGTTGTACTGTGTTAGAAAAGACATGGAAATACTTTCTGAGCACACGGAGCAAAGTACAAGCCTTGTTT</canonical>
            <polymorphic>GGTGGCACTCTATTAGTGTGCTACGAACATTTCTTTCCCATTCAACTAGTCTCGCTTTCTCTTTTCACACCCATTTTTCCAGTTCGTAAAGCAATCTAGACACTCGCGTCCCAATAGAAAAAAAGCTCTCCCGATTTAGTATATAAGTGCTCAGTGAGCTGCCTATTTTTGTCCTTTTCTCCTTCAAGGGGTCCCAAAAGTATCTGTTTTCAAGTCATTGAAAAAAAGTGATGAGGCGCGTGGATGATGTCATTATTTTTCGAAGATTTCGAATTCGAAGAAGTGGGGACTAAACCCAGCTATTAAGAATGAGTGGCTTTTCTTATGATGAATTTGAAAAACAACAAACAACTGCAAATTGATGGGTTGAACAAGTCTGGAGACGCTCTGAAAATAAGAGGAATCTGTAATTTGATATGTAGTTCTTGTAGTGTGTTGTCGCGAGTTGAAAGTGGACAACAACTGCGCGTGTTTTTGAGAATTTAGATTAGATTTATGGRCCAGATTTATAAAATCTGTTGTTATGATCTCAAGGGAACCTAACCTTTAACTTTGAGCCAATTTATCTCGATTCCTATGGTATATATGAAAAAGTAATCAACTGGTAAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACAGATTTTTCATATTTTGCTTAGGAGCCAAGATAAATCAACTCAAACTTGGCAGTGTAGAAACCCGGGAACGGTTACCGTGAACAGAGTACGCCACCCATTGCTTGCAATTTCAGCTCTATTATCTTGGTTCTTGTAAAAGATATCAAGAATTAGTCAAGTGATAAAATATTGTTGATATTATGATAAACAATTTATTAGTTGACAAACTTTTGATATCTCTTATAAGAACGGAGATAATGGATCTCAAAGTGAATGGTTTGTGGGACAACGTAATTGGGATCAAAGTTGTACTGTGTTAGAAAAGACATGGAAATACTTTCTGAGCACACGGAGCAAAGTACAAGCCTTGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>231 184 141 125 115 89 57 33 17 8</canonical_bands>
                <polymorphic_bands>241 231 141 125 115 89 33 17 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATATGTAGTTCTTGTAGTGTGTTG</pcr_primer_p1>
		<pcr_primer_p2>TTTGATCCCAATTACGTTGT</pcr_primer_p2>
		<pcr_amplicon_size>520</pcr_amplicon_size>
		<canonical_amplicon>TGATATGTAGTTCTTGTAGTGTGTTGTCGCGAGTTGAAAGTGGACAACAACTGCGCGTGTTTTTGAGAATTTAGATTAGATTTATGGGCCAGATTTATAAAATCTGTTGTTATGATCTCAAGGGAACCTAACCTTTAACTTTGAGCCAATTTATCTCGATTCCTATGGTATATATGAAAAAGTAATCAACTGGTAAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACAGATTTTTCATATTTTGCTTAGGAGCCAAGATAAATCAACTCAAACTTGGCAGTGTAGAAACCCGGGAACGGTTACCGTGAACAGAGTACGCCACCCATTGCTTGCAATTTCAGCTCTATTATCTTGGTTCTTGTAAAAGATATCAAGAATTAGTCAAGTGATAAAATATTGTTGATATTATGATAAACAATTTATTAGTTGACAAACTTTTGATATCTCTTATAAGAACGGAGATAATGGATCTCAAAGTGAATGGTTTGTGGGACAACGTAATTGGGATCAAA</canonical_amplicon>
		<polymorphic_amplicon>TGATATGTAGTTCTTGTAGTGTGTTGTCGCGAGTTGAAAGTGGACAACAACTGCGCGTGTTTTTGAGAATTTAGATTAGATTTATGGRCCAGATTTATAAAATCTGTTGTTATGATCTCAAGGGAACCTAACCTTTAACTTTGAGCCAATTTATCTCGATTCCTATGGTATATATGAAAAAGTAATCAACTGGTAAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACAGATTTTTCATATTTTGCTTAGGAGCCAAGATAAATCAACTCAAACTTGGCAGTGTAGAAACCCGGGAACGGTTACCGTGAACAGAGTACGCCACCCATTGCTTGCAATTTCAGCTCTATTATCTTGGTTCTTGTAAAAGATATCAAGAATTAGTCAAGTGATAAAATATTGTTGATATTATGATAAACAATTTATTAGTTGACAAACTTTTGATATCTCTTATAAGAACGGAGATAATGGATCTCAAAGTGAATGGTTTGTGGGACAACGTAATTGGGATCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23211</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>58608</contig_pos>
        <strand>+</strand>
        <context>GAGTTGAAAG[C/T]GGACAACAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTGTAATTTGATATGTAGTTCTTGTAGTGTGTTGTCGCGAGTTGAAAG</left_flank>
        <right_flank>GGACAACAACTGCGCGTGTTTTTGAGAATTTAGATTAGATTTATGGGCCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTGATATCTTTCACAGGAACCGAGGTATATGGGCTCAAAGTTTGGGTGGCACTCTATTAGTGTGCTACGAACATTTCTTTCCCATTCAACTAGTCTCGCTTTCTCTTTTCACACCCATTTTTCCAGTTCGTAAAGCAATCTAGACACTCGCGTCCCAATAGAAAAAAAGCTCTCCCGATTTAGTATATAAGTGCTCAGTGAGCTGCCTATTTTTGTCCTTTTCTCCTTCAAGGGGTCCCAAAAGTATCTGTTTTCAAGTCATTGAAAAAAAGTGATGAGGCGCGTGGATGATGTCATTATTTTTCGAAGATTTCGAATTCGAAGAAGTGGGGACTAAACCCAGCTATTAAGAATGAGTGGCTTTTCTTATGATGAATTTGAAAAACAACAAACAACTGCAAATTGATGGGTTGAACAAGTCTGGAGACGCTCTGAAAATAAGAGGAATCTGTAATTTGATATGTAGTTCTTGTAGTGTGTTGTCGCGAGTTGAAAGTGGACAACAACTGCGCGTGTTTTTGAGAATTTAGATTAGATTTATGGGCCAGATTTATAAAATCTGTTGTTATGATCTCAAGGGAACCTAACCTTTAACTTTGAGCCAATTTATCTCGATTCCTATGGTATATATGAAAAAGTAATCAACTGGTAAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACAGATTTTTCATATTTTGCTTAGGAGCCAAGATAAATCAACTCAAACTTGGCAGTGTAGAAACCCGGGAACGGTTACCGTGAACAGAGTACGCCACCCATTGCTTGCAATTTCAGCTCTATTATCTTGGTTCTTGTAAAAGATATCAAGAATTAGTCAAGTGATAAAATATTGTTGATATTATGATAAACAATTTATTAGTTGACAAACTTTTGATATCTCTTATAAGAACGGAGATAATGGATCTCAAAGTGAATGGTTTGTGGGACAACGTAATTGGGATCAAAGTTGTACTGTGTTAGAAAAGA</canonical>
            <polymorphic>TTTTTGATATCTTTCACAGGAACCGAGGTATATGGGCTCAAAGTTTGGGTGGCACTCTATTAGTGTGCTACGAACATTTCTTTCCCATTCAACTAGTCTCGCTTTCTCTTTTCACACCCATTTTTCCAGTTCGTAAAGCAATCTAGACACTCGCGTCCCAATAGAAAAAAAGCTCTCCCGATTTAGTATATAAGTGCTCAGTGAGCTGCCTATTTTTGTCCTTTTCTCCTTCAAGGGGTCCCAAAAGTATCTGTTTTCAAGTCATTGAAAAAAAGTGATGAGGCGCGTGGATGATGTCATTATTTTTCGAAGATTTCGAATTCGAAGAAGTGGGGACTAAACCCAGCTATTAAGAATGAGTGGCTTTTCTTATGATGAATTTGAAAAACAACAAACAACTGCAAATTGATGGGTTGAACAAGTCTGGAGACGCTCTGAAAATAAGAGGAATCTGTAATTTGATATGTAGTTCTTGTAGTGTGTTGTCGCGAGTTGAAAGYGGACAACAACTGCGCGTGTTTTTGAGAATTTAGATTAGATTTATGGGCCAGATTTATAAAATCTGTTGTTATGATCTCAAGGGAACCTAACCTTTAACTTTGAGCCAATTTATCTCGATTCCTATGGTATATATGAAAAAGTAATCAACTGGTAAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACAGATTTTTCATATTTTGCTTAGGAGCCAAGATAAATCAACTCAAACTTGGCAGTGTAGAAACCCGGGAACGGTTACCGTGAACAGAGTACGCCACCCATTGCTTGCAATTTCAGCTCTATTATCTTGGTTCTTGTAAAAGATATCAAGAATTAGTCAAGTGATAAAATATTGTTGATATTATGATAAACAATTTATTAGTTGACAAACTTTTGATATCTCTTATAAGAACGGAGATAATGGATCTCAAAGTGAATGGTTTGTGGGACAACGTAATTGGGATCAAAGTTGTACTGTGTTAGAAAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>156 118 91 75 74 67 47 47 43 35 33 33 30 25 19 17 16 14 12 11 11 10 7 3 2 2 2</canonical_bands>
                <polymorphic_bands>156 118 91 75 74 67 47 47 43 36 35 33 33 30 25 16 14 12 11 11 10 7 3 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 190 121 105 83</canonical_bands>
                <polymorphic_bands>691 121 105 83</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGACTAAACCCAGCTATTAAGAA</pcr_primer_p1>
		<pcr_primer_p2>CCTTGAGATCATAACAACAGATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGACTAAACCCAGCTATTAAGAATGAGTGGCTTTTCTTATGATGAATTTGAAAAACAACAAACAACTGCAAATTGATGGGTTGAACAAGTCTGGAGACGCTCTGAAAATAAGAGGAATCTGTAATTTGATATGTAGTTCTTGTAGTGTGTTGTCGCGAGTTGAAAGTGGACAACAACTGCGCGTGTTTTTGAGAATTTAGATTAGATTTATGGGCCAGATTTATAAAATCTGTTGTTATGATCTCAAGG</canonical_amplicon>
		<polymorphic_amplicon>GGACTAAACCCAGCTATTAAGAATGAGTGGCTTTTCTTATGATGAATTTGAAAAACAACAAACAACTGCAAATTGATGGGTTGAACAAGTCTGGAGACGCTCTGAAAATAAGAGGAATCTGTAATTTGATATGTAGTTCTTGTAGTGTGTTGTCGCGAGTTGAAAGYGGACAACAACTGCGCGTGTTTTTGAGAATTTAGATTAGATTTATGGGCCAGATTTATAAAATCTGTTGTTATGATCTCAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23212</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>58537</contig_pos>
        <strand>+</strand>
        <context>CAAGTCTGGA[A/G]ACGCTCTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTGAAAAACAACAAACAACTGCAAATTGATGGGTTGAACAAGTCTGGA</left_flank>
        <right_flank>ACGCTCTGAAAATAAGAGGAATCTGTAATTTGATATGTAGTTCTTGTAGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGATATCAAAAGTGTATAAACTGATAAAATGTAATTATAACTATGATCAATATTTTGTCAGTTGACCTCTTTTTGATATCTTTCACAGGAACCGAGGTATATGGGCTCAAAGTTTGGGTGGCACTCTATTAGTGTGCTACGAACATTTCTTTCCCATTCAACTAGTCTCGCTTTCTCTTTTCACACCCATTTTTCCAGTTCGTAAAGCAATCTAGACACTCGCGTCCCAATAGAAAAAAAGCTCTCCCGATTTAGTATATAAGTGCTCAGTGAGCTGCCTATTTTTGTCCTTTTCTCCTTCAAGGGGTCCCAAAAGTATCTGTTTTCAAGTCATTGAAAAAAAGTGATGAGGCGCGTGGATGATGTCATTATTTTTCGAAGATTTCGAATTCGAAGAAGTGGGGACTAAACCCAGCTATTAAGAATGAGTGGCTTTTCTTATGATGAATTTGAAAAACAACAAACAACTGCAAATTGATGGGTTGAACAAGTCTGGAGACGCTCTGAAAATAAGAGGAATCTGTAATTTGATATGTAGTTCTTGTAGTGTGTTGTCGCGAGTTGAAAGTGGACAACAACTGCGCGTGTTTTTGAGAATTTAGATTAGATTTATGGGCCAGATTTATAAAATCTGTTGTTATGATCTCAAGGGAACCTAACCTTTAACTTTGAGCCAATTTATCTCGATTCCTATGGTATATATGAAAAAGTAATCAACTGGTAAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACAGATTTTTCATATTTTGCTTAGGAGCCAAGATAAATCAACTCAAACTTGGCAGTGTAGAAACCCGGGAACGGTTACCGTGAACAGAGTACGCCACCCATTGCTTGCAATTTCAGCTCTATTATCTTGGTTCTTGTAAAAGATATCAAGAATTAGTCAAGTGATAAAATATTGTTGATATTATGATAAACAATTTATTAGTTGACAAACTTTTGATATCTCTTATAAGAACGGAGA</canonical>
            <polymorphic>AAAGATATCAAAAGTGTATAAACTGATAAAATGTAATTATAACTATGATCAATATTTTGTCAGTTGACCTCTTTTTGATATCTTTCACAGGAACCGAGGTATATGGGCTCAAAGTTTGGGTGGCACTCTATTAGTGTGCTACGAACATTTCTTTCCCATTCAACTAGTCTCGCTTTCTCTTTTCACACCCATTTTTCCAGTTCGTAAAGCAATCTAGACACTCGCGTCCCAATAGAAAAAAAGCTCTCCCGATTTAGTATATAAGTGCTCAGTGAGCTGCCTATTTTTGTCCTTTTCTCCTTCAAGGGGTCCCAAAAGTATCTGTTTTCAAGTCATTGAAAAAAAGTGATGAGGCGCGTGGATGATGTCATTATTTTTCGAAGATTTCGAATTCGAAGAAGTGGGGACTAAACCCAGCTATTAAGAATGAGTGGCTTTTCTTATGATGAATTTGAAAAACAACAAACAACTGCAAATTGATGGGTTGAACAAGTCTGGARACGCTCTGAAAATAAGAGGAATCTGTAATTTGATATGTAGTTCTTGTAGTGTGTTGTCGCGAGTTGAAAGTGGACAACAACTGCGCGTGTTTTTGAGAATTTAGATTAGATTTATGGGCCAGATTTATAAAATCTGTTGTTATGATCTCAAGGGAACCTAACCTTTAACTTTGAGCCAATTTATCTCGATTCCTATGGTATATATGAAAAAGTAATCAACTGGTAAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACAGATTTTTCATATTTTGCTTAGGAGCCAAGATAAATCAACTCAAACTTGGCAGTGTAGAAACCCGGGAACGGTTACCGTGAACAGAGTACGCCACCCATTGCTTGCAATTTCAGCTCTATTATCTTGGTTCTTGTAAAAGATATCAAGAATTAGTCAAGTGATAAAATATTGTTGATATTATGATAAACAATTTATTAGTTGACAAACTTTTGATATCTCTTATAAGAACGGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGACTAAACCCAGCTATTAAGAA</pcr_primer_p1>
		<pcr_primer_p2>CCTTGAGATCATAACAACAGATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGACTAAACCCAGCTATTAAGAATGAGTGGCTTTTCTTATGATGAATTTGAAAAACAACAAACAACTGCAAATTGATGGGTTGAACAAGTCTGGAGACGCTCTGAAAATAAGAGGAATCTGTAATTTGATATGTAGTTCTTGTAGTGTGTTGTCGCGAGTTGAAAGTGGACAACAACTGCGCGTGTTTTTGAGAATTTAGATTAGATTTATGGGCCAGATTTATAAAATCTGTTGTTATGATCTCAAGG</canonical_amplicon>
		<polymorphic_amplicon>GGACTAAACCCAGCTATTAAGAATGAGTGGCTTTTCTTATGATGAATTTGAAAAACAACAAACAACTGCAAATTGATGGGTTGAACAAGTCTGGARACGCTCTGAAAATAAGAGGAATCTGTAATTTGATATGTAGTTCTTGTAGTGTGTTGTCGCGAGTTGAAAGTGGACAACAACTGCGCGTGTTTTTGAGAATTTAGATTAGATTTATGGGCCAGATTTATAAAATCTGTTGTTATGATCTCAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23221</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>70009</contig_pos>
        <strand>+</strand>
        <context>AAGATCCATG[C/T]TTTTAGGATC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTTTATAAAATTTCTAGGTTTCTGGGCTCCAAGCTTTTTAAGATCCATG</left_flank>
        <right_flank>TTTTAGGATCACTCTAGATTTTCATAAAAAATAAATCTAAAAATAATTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTTTTTTGAGTAAATAGCTATAGAAGTCGCTACATAAAAACGGGTGTTTCTTAAGACATAGGTATCTTGGAAGCACGAAAATTGGTAGAAATATAATTTTACTTTTGATTCAAAGCTCCTGAATTTTTCAAAGCAACTCCTCAAGTCTAGGTAGTGTTATAATTCTTCAAAGTTGAACGGCGTAACGTTGTAATTTTCATGAGATGAATCAATTTTGACAAGTGATAACGCAACTCAAAGTTGATCAAATAATTCGAAAATTTGCTAGCTTACTGATGAATTATTTGAGTTTTTGTAATTCAAATTTTAGCCCAGTATAACGCCTTGCTCAAATTTTATGCTAGTTCAAAGTTCAAGTAATCATGCGCCACCTTGTACAGATTTTATGATACATGAAGAACCAAACTACGGAATTTGTTGTATTACCTGACATTTTAACCTAAATTTCGTTTATAAAATTTCTAGGTTTCTGGGCTCCAAGCTTTTTAAGATCCATGTTTTTAGGATCACTCTAGATTTTCATAAAAAATAAATCTAAAAATAATTTCATCAAAATTTAGTGATCGTTCGATCTTCGTCTCTCCTATCTCCTCCCCCTTAAAACAGTCTGTCACAAACCATGCCGTGGCGTTGTTGACTGACCAGTATCCATCCCCTATCTTCTCCAAAACATATATCATCGCATTTTCACCTATTTCTCTAGCCACTCTCCAATCGGTACACACTATTTCTTTGTTTTCCATCTCCCCCCACCGATTTCTCGTTTTCCTTCTTCCTTCTTCTCATGCATTCAATGAGTGAGAGAAAAGACAGAAACAAACTTTTTCTGTCTCTCTGTTCTCTCCTCTAAGCCTCTGGGTATTTTTCCTCTTTTTTCATATATCTCTTCTTTTTCGTTTGGGTATTTTTTTTGAGTTGTATATGATGGAGAAAATAGAGAATACATACCGTTAATTTGAGCTCAATTATCTCATTATCTATATGAGATATCAAAAATG</canonical>
            <polymorphic>ACCTTTTTTGAGTAAATAGCTATAGAAGTCGCTACATAAAAACGGGTGTTTCTTAAGACATAGGTATCTTGGAAGCACGAAAATTGGTAGAAATATAATTTTACTTTTGATTCAAAGCTCCTGAATTTTTCAAAGCAACTCCTCAAGTCTAGGTAGTGTTATAATTCTTCAAAGTTGAACGGCGTAACGTTGTAATTTTCATGAGATGAATCAATTTTGACAAGTGATAACGCAACTCAAAGTTGATCAAATAATTCGAAAATTTGCTAGCTTACTGATGAATTATTTGAGTTTTTGTAATTCAAATTTTAGCCCAGTATAACGCCTTGCTCAAATTTTATGCTAGTTCAAAGTTCAAGTAATCATGCGCCACCTTGTACAGATTTTATGATACATGAAGAACCAAACTACGGAATTTGTTGTATTACCTGACATTTTAACCTAAATTTCGTTTATAAAATTTCTAGGTTTCTGGGCTCCAAGCTTTTTAAGATCCATGYTTTTAGGATCACTCTAGATTTTCATAAAAAATAAATCTAAAAATAATTTCATCAAAATTTAGTGATCGTTCGATCTTCGTCTCTCCTATCTCCTCCCCCTTAAAACAGTCTGTCACAAACCATGCCGTGGCGTTGTTGACTGACCAGTATCCATCCCCTATCTTCTCCAAAACATATATCATCGCATTTTCACCTATTTCTCTAGCCACTCTCCAATCGGTACACACTATTTCTTTGTTTTCCATCTCCCCCCACCGATTTCTCGTTTTCCTTCTTCCTTCTTCTCATGCATTCAATGAGTGAGAGAAAAGACAGAAACAAACTTTTTCTGTCTCTCTGTTCTCTCCTCTAAGCCTCTGGGTATTTTTCCTCTTTTTTCATATATCTCTTCTTTTTCGTTTGGGTATTTTTTTTGAGTTGTATATGATGGAGAAAATAGAGAATACATACCGTTAATTTGAGCTCAATTATCTCATTATCTATATGAGATATCAAAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAATTTGTTGTATTACCTGACA</pcr_primer_p1>
		<pcr_primer_p2>ATAGGGGATGGATACTGGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAATTTGTTGTATTACCTGACATTTTAACCTAAATTTCGTTTATAAAATTTCTAGGTTTCTGGGCTCCAAGCTTTTTAAGATCCATGTTTTTAGGATCACTCTAGATTTTCATAAAAAATAAATCTAAAAATAATTTCATCAAAATTTAGTGATCGTTCGATCTTCGTCTCTCCTATCTCCTCCCCCTTAAAACAGTCTGTCACAAACCATGCCGTGGCGTTGTTGACTGACCAGTATCCATCCCCTAT</canonical_amplicon>
		<polymorphic_amplicon>GGAATTTGTTGTATTACCTGACATTTTAACCTAAATTTCGTTTATAAAATTTCTAGGTTTCTGGGCTCCAAGCTTTTTAAGATCCATGYTTTTAGGATCACTCTAGATTTTCATAAAAAATAAATCTAAAAATAATTTCATCAAAATTTAGTGATCGTTCGATCTTCGTCTCTCCTATCTCCTCCCCCTTAAAACAGTCTGTCACAAACCATGCCGTGGCGTTGTTGACTGACCAGTATCCATCCCCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23222</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>72648</contig_pos>
        <strand>+</strand>
        <context>TTTTTTCTGG[A/G]TGCCTAGGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAGAAGGGAAAAATAACAATTTGACAGATGTGAGCGAGTTTTTTCTGG</left_flank>
        <right_flank>TGCCTAGGAAAGAAGAAAGGTTTATCTTTTTTGGGTCTAATGGAATGCCC</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCTATAAGAGTGATTCTGGAGTAGGCACCCTAAGACGAGAATCCATTCAATAGAAAACTTTAGGTTTCAGTTCTAATTTTAAAGATGTTGCTTTTTTTCAGATCCTCTCCACTACCAAACCTCGACACTCCTCTCACCGAATCCAGTCATCAATCATCGGTTGTCAGCAAAGCGATCAACGAGGTAAGCGAGAGTAGTAGTAGTTAAAAATCTTGGCGTTTATTGCAAAAATCTCATTTTCTATCAATTAAATTTTATTGGTATAGAATCATTATTCTCTGCTGCAATTACTATTTCTAAACGGTCGGGGCTCATTCTCCATCATGCGCCTTTAAAACGGCTATTGTTCTAAAGTTCGCGTTTTCCATCCATTACCTGTTCCCCTGGGTAAATCATGGGAGAGAGAGAAGAATTTTTTTGGCCATAGATCATAACAATCGGGGGTGAAAAAGAAGGGAAAAATAACAATTTGACAGATGTGAGCGAGTTTTTTCTGGATGCCTAGGAAAGAAGAAAGGTTTATCTTTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTCAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTCGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAAGGGTTCGGTATTCTGAGCATCTCTTTTTCAGAATAGAACTCTAAATTTGAGCTAAACTTGTCAGAAATCTAGACAAAAAAAACTGGAACTGGCGTTCCAATTTTTCCTCTTGTTCTTCTTTTTTCCCCTCTCCTTAAACTTCCTAAATCATCAAAGAACGCCTTCTTTTCAGTCAAGTCTTCTTATAAGCCTCTGAATTTTTTCCAACCAAAACACCCGATTCATCAGTTTGACTTTCAAAAAAAAAGCAAGTTGGAGGGCATACCAGAAGAAATGAACACAACTTTTT</canonical>
            <polymorphic>ATTCTATAAGAGTGATTCTGGAGTAGGCACCCTAAGACGAGAATCCATTCAATAGAAAACTTTAGGTTTCAGTTCTAATTTTAAAGATGTTGCTTTTTTTCAGATCCTCTCCACTACCAAACCTCGACACTCCTCTCACCGAATCCAGTCATCAATCATCGGTTGTCAGCAAAGCGATCAACGAGGTAAGCGAGAGTAGTAGTAGTTAAAAATCTTGGCGTTTATTGCAAAAATCTCATTTTCTATCAATTAAATTTTATTGGTATAGAATCATTATTCTCTGCTGCAATTACTATTTCTAAACGGTCGGGGCTCATTCTCCATCATGCGCCTTTAAAACGGCTATTGTTCTAAAGTTCGCGTTTTCCATCCATTACCTGTTCCCCTGGGTAAATCATGGGAGAGAGAGAAGAATTTTTTTGGCCATAGATCATAACAATCGGGGGTGAAAAAGAAGGGAAAAATAACAATTTGACAGATGTGAGCGAGTTTTTTCTGGRTGCCTAGGAAAGAAGAAAGGTTTATCTTTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTCAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTCGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAAGGGTTCGGTATTCTGAGCATCTCTTTTTCAGAATAGAACTCTAAATTTGAGCTAAACTTGTCAGAAATCTAGACAAAAAAAACTGGAACTGGCGTTCCAATTTTTCCTCTTGTTCTTCTTTTTTCCCCTCTCCTTAAACTTCCTAAATCATCAAAGAACGCCTTCTTTTCAGTCAAGTCTTCTTATAAGCCTCTGAATTTTTTCCAACCAAAACACCCGATTCATCAGTTTGACTTTCAAAAAAAAAGCAAGTTGGAGGGCATACCAGAAGAAATGAACACAACTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>478 220 190 94 18</canonical_bands>
                <polymorphic_bands>668 220 94 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAAGAAGGGAAAAATAACAA</pcr_primer_p1>
		<pcr_primer_p2>TGAAAAAGAGATGCTCAGAATAC</pcr_primer_p2>
		<pcr_amplicon_size>294</pcr_amplicon_size>
		<canonical_amplicon>GAAAAAGAAGGGAAAAATAACAATTTGACAGATGTGAGCGAGTTTTTTCTGGATGCCTAGGAAAGAAGAAAGGTTTATCTTTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTCAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTCGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAAGGGTTCGGTATTCTGAGCATCTCTTTTTCA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAAGAAGGGAAAAATAACAATTTGACAGATGTGAGCGAGTTTTTTCTGGRTGCCTAGGAAAGAAGAAAGGTTTATCTTTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTCAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTCGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAAGGGTTCGGTATTCTGAGCATCTCTTTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23223</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>72627</contig_pos>
        <strand>+</strand>
        <context>AATTTGACAG[A/G]TGTGAGCGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATCATAACAATCGGGGGTGAAAAAGAAGGGAAAAATAACAATTTGACAG</left_flank>
        <right_flank>TGTGAGCGAGTTTTTTCTGGATGCCTAGGAAAGAAGAAAGGTTTATCTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATGACGATTTGTGGGACATTCTATAAGAGTGATTCTGGAGTAGGCACCCTAAGACGAGAATCCATTCAATAGAAAACTTTAGGTTTCAGTTCTAATTTTAAAGATGTTGCTTTTTTTCAGATCCTCTCCACTACCAAACCTCGACACTCCTCTCACCGAATCCAGTCATCAATCATCGGTTGTCAGCAAAGCGATCAACGAGGTAAGCGAGAGTAGTAGTAGTTAAAAATCTTGGCGTTTATTGCAAAAATCTCATTTTCTATCAATTAAATTTTATTGGTATAGAATCATTATTCTCTGCTGCAATTACTATTTCTAAACGGTCGGGGCTCATTCTCCATCATGCGCCTTTAAAACGGCTATTGTTCTAAAGTTCGCGTTTTCCATCCATTACCTGTTCCCCTGGGTAAATCATGGGAGAGAGAGAAGAATTTTTTTGGCCATAGATCATAACAATCGGGGGTGAAAAAGAAGGGAAAAATAACAATTTGACAGATGTGAGCGAGTTTTTTCTGGATGCCTAGGAAAGAAGAAAGGTTTATCTTTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTCAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTCGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAAGGGTTCGGTATTCTGAGCATCTCTTTTTCAGAATAGAACTCTAAATTTGAGCTAAACTTGTCAGAAATCTAGACAAAAAAAACTGGAACTGGCGTTCCAATTTTTCCTCTTGTTCTTCTTTTTTCCCCTCTCCTTAAACTTCCTAAATCATCAAAGAACGCCTTCTTTTCAGTCAAGTCTTCTTATAAGCCTCTGAATTTTTTCCAACCAAAACACCCGATTCATCAGTTTGACTTTCAAAAAAAAAGCAAGTTGGAGGGCATACCAG</canonical>
            <polymorphic>AAAAATGACGATTTGTGGGACATTCTATAAGAGTGATTCTGGAGTAGGCACCCTAAGACGAGAATCCATTCAATAGAAAACTTTAGGTTTCAGTTCTAATTTTAAAGATGTTGCTTTTTTTCAGATCCTCTCCACTACCAAACCTCGACACTCCTCTCACCGAATCCAGTCATCAATCATCGGTTGTCAGCAAAGCGATCAACGAGGTAAGCGAGAGTAGTAGTAGTTAAAAATCTTGGCGTTTATTGCAAAAATCTCATTTTCTATCAATTAAATTTTATTGGTATAGAATCATTATTCTCTGCTGCAATTACTATTTCTAAACGGTCGGGGCTCATTCTCCATCATGCGCCTTTAAAACGGCTATTGTTCTAAAGTTCGCGTTTTCCATCCATTACCTGTTCCCCTGGGTAAATCATGGGAGAGAGAGAAGAATTTTTTTGGCCATAGATCATAACAATCGGGGGTGAAAAAGAAGGGAAAAATAACAATTTGACAGRTGTGAGCGAGTTTTTTCTGGATGCCTAGGAAAGAAGAAAGGTTTATCTTTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTCAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTCGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAAGGGTTCGGTATTCTGAGCATCTCTTTTTCAGAATAGAACTCTAAATTTGAGCTAAACTTGTCAGAAATCTAGACAAAAAAAACTGGAACTGGCGTTCCAATTTTTCCTCTTGTTCTTCTTTTTTCCCCTCTCCTTAAACTTCCTAAATCATCAAAGAACGCCTTCTTTTCAGTCAAGTCTTCTTATAAGCCTCTGAATTTTTTCCAACCAAAACACCCGATTCATCAGTTTGACTTTCAAAAAAAAAGCAAGTTGGAGGGCATACCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACGGCTATTGTTCTAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>CATTCCATTAGACCCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>212</pcr_amplicon_size>
		<canonical_amplicon>AAAACGGCTATTGTTCTAAAGTTCGCGTTTTCCATCCATTACCTGTTCCCCTGGGTAAATCATGGGAGAGAGAGAAGAATTTTTTTGGCCATAGATCATAACAATCGGGGGTGAAAAAGAAGGGAAAAATAACAATTTGACAGATGTGAGCGAGTTTTTTCTGGATGCCTAGGAAAGAAGAAAGGTTTATCTTTTTTGGGTCTAATGGAATG</canonical_amplicon>
		<polymorphic_amplicon>AAAACGGCTATTGTTCTAAAGTTCGCGTTTTCCATCCATTACCTGTTCCCCTGGGTAAATCATGGGAGAGAGAGAAGAATTTTTTTGGCCATAGATCATAACAATCGGGGGTGAAAAAGAAGGGAAAAATAACAATTTGACAGRTGTGAGCGAGTTTTTTCTGGATGCCTAGGAAAGAAGAAAGGTTTATCTTTTTTGGGTCTAATGGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23224</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>72420</contig_pos>
        <strand>+</strand>
        <context>GGTATAGAAT[C/T]ATTATTCTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATTGCAAAAATCTCATTTTCTATCAATTAAATTTTATTGGTATAGAAT</left_flank>
        <right_flank>ATTATTCTCTGCTGCAATTACTATTTCTAAACGGTCGGGGCTCATTCTCC</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATCGGCTTAACTGACTTTAAAGGCACATACCGTGAACCCTGTAATAGAAGGGCCCCATACTGTCAAGTTTGAGCTCAATTATCTCGGTTCCTGGAAAAGGTACAAAAAAGTTGTCAACTGACAAAATGTAAATTATAGTATCAAAAATATTTCGTCAGTCGACTACTTTTTGATATCTCTCACAGGAAATGAGATACATAGGCTCAAAAATGACGATTTGTGGGACATTCTATAAGAGTGATTCTGGAGTAGGCACCCTAAGACGAGAATCCATTCAATAGAAAACTTTAGGTTTCAGTTCTAATTTTAAAGATGTTGCTTTTTTTCAGATCCTCTCCACTACCAAACCTCGACACTCCTCTCACCGAATCCAGTCATCAATCATCGGTTGTCAGCAAAGCGATCAACGAGGTAAGCGAGAGTAGTAGTAGTTAAAAATCTTGGCGTTTATTGCAAAAATCTCATTTTCTATCAATTAAATTTTATTGGTATAGAATCATTATTCTCTGCTGCAATTACTATTTCTAAACGGTCGGGGCTCATTCTCCATCATGCGCCTTTAAAACGGCTATTGTTCTAAAGTTCGCGTTTTCCATCCATTACCTGTTCCCCTGGGTAAATCATGGGAGAGAGAGAAGAATTTTTTTGGCCATAGATCATAACAATCGGGGGTGAAAAAGAAGGGAAAAATAACAATTTGACAGATGTGAGCGAGTTTTTTCTGGATGCCTAGGAAAGAAGAAAGGTTTATCTTTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTCAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTCGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAAGGGTTCGGTATTCTGAGCATCTCTTTTTCAGAATAGAACTCTAAATTTGAGCTAAACTTGT</canonical>
            <polymorphic>AAATCGGCTTAACTGACTTTAAAGGCACATACCGTGAACCCTGTAATAGAAGGGCCCCATACTGTCAAGTTTGAGCTCAATTATCTCGGTTCCTGGAAAAGGTACAAAAAAGTTGTCAACTGACAAAATGTAAATTATAGTATCAAAAATATTTCGTCAGTCGACTACTTTTTGATATCTCTCACAGGAAATGAGATACATAGGCTCAAAAATGACGATTTGTGGGACATTCTATAAGAGTGATTCTGGAGTAGGCACCCTAAGACGAGAATCCATTCAATAGAAAACTTTAGGTTTCAGTTCTAATTTTAAAGATGTTGCTTTTTTTCAGATCCTCTCCACTACCAAACCTCGACACTCCTCTCACCGAATCCAGTCATCAATCATCGGTTGTCAGCAAAGCGATCAACGAGGTAAGCGAGAGTAGTAGTAGTTAAAAATCTTGGCGTTTATTGCAAAAATCTCATTTTCTATCAATTAAATTTTATTGGTATAGAATYATTATTCTCTGCTGCAATTACTATTTCTAAACGGTCGGGGCTCATTCTCCATCATGCGCCTTTAAAACGGCTATTGTTCTAAAGTTCGCGTTTTCCATCCATTACCTGTTCCCCTGGGTAAATCATGGGAGAGAGAGAAGAATTTTTTTGGCCATAGATCATAACAATCGGGGGTGAAAAAGAAGGGAAAAATAACAATTTGACAGATGTGAGCGAGTTTTTTCTGGATGCCTAGGAAAGAAGAAAGGTTTATCTTTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTCAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTCGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAAGGGTTCGGTATTCTGAGCATCTCTTTTTCAGAATAGAACTCTAAATTTGAGCTAAACTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>504 242 127 100 27</canonical_bands>
                <polymorphic_bands>631 242 100 27</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>504 242 127 100 27</canonical_bands>
                <polymorphic_bands>631 242 100 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTTTATTGCAAAAATCTCATT</pcr_primer_p1>
		<pcr_primer_p2>GTTATTTTTCCCTTCTTTTTCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTTTATTGCAAAAATCTCATTTTCTATCAATTAAATTTTATTGGTATAGAATCATTATTCTCTGCTGCAATTACTATTTCTAAACGGTCGGGGCTCATTCTCCATCATGCGCCTTTAAAACGGCTATTGTTCTAAAGTTCGCGTTTTCCATCCATTACCTGTTCCCCTGGGTAAATCATGGGAGAGAGAGAAGAATTTTTTTGGCCATAGATCATAACAATCGGGGGTGAAAAAGAAGGGAAAAATAAC</canonical_amplicon>
		<polymorphic_amplicon>CGTTTATTGCAAAAATCTCATTTTCTATCAATTAAATTTTATTGGTATAGAATYATTATTCTCTGCTGCAATTACTATTTCTAAACGGTCGGGGCTCATTCTCCATCATGCGCCTTTAAAACGGCTATTGTTCTAAAGTTCGCGTTTTCCATCCATTACCTGTTCCCCTGGGTAAATCATGGGAGAGAGAGAAGAATTTTTTTGGCCATAGATCATAACAATCGGGGGTGAAAAAGAAGGGAAAAATAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23225</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>72399</contig_pos>
        <strand>+</strand>
        <context>TTCTATCAAT[C/T]AAATTTTATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTAGTTAAAAATCTTGGCGTTTATTGCAAAAATCTCATTTTCTATCAAT</left_flank>
        <right_flank>AAATTTTATTGGTATAGAATCATTATTCTCTGCTGCAATTACTATTTCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTCAATTGGGTGTTCTAAAAAAATCGGCTTAACTGACTTTAAAGGCACATACCGTGAACCCTGTAATAGAAGGGCCCCATACTGTCAAGTTTGAGCTCAATTATCTCGGTTCCTGGAAAAGGTACAAAAAAGTTGTCAACTGACAAAATGTAAATTATAGTATCAAAAATATTTCGTCAGTCGACTACTTTTTGATATCTCTCACAGGAAATGAGATACATAGGCTCAAAAATGACGATTTGTGGGACATTCTATAAGAGTGATTCTGGAGTAGGCACCCTAAGACGAGAATCCATTCAATAGAAAACTTTAGGTTTCAGTTCTAATTTTAAAGATGTTGCTTTTTTTCAGATCCTCTCCACTACCAAACCTCGACACTCCTCTCACCGAATCCAGTCATCAATCATCGGTTGTCAGCAAAGCGATCAACGAGGTAAGCGAGAGTAGTAGTAGTTAAAAATCTTGGCGTTTATTGCAAAAATCTCATTTTCTATCAATTAAATTTTATTGGTATAGAATCATTATTCTCTGCTGCAATTACTATTTCTAAACGGTCGGGGCTCATTCTCCATCATGCGCCTTTAAAACGGCTATTGTTCTAAAGTTCGCGTTTTCCATCCATTACCTGTTCCCCTGGGTAAATCATGGGAGAGAGAGAAGAATTTTTTTGGCCATAGATCATAACAATCGGGGGTGAAAAAGAAGGGAAAAATAACAATTTGACAGATGTGAGCGAGTTTTTTCTGGATGCCTAGGAAAGAAGAAAGGTTTATCTTTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTCAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTCGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAAGGGTTCGGTATTCTGAGCATCTCTTTTTCAGAATAGAACT</canonical>
            <polymorphic>CCTCAATTGGGTGTTCTAAAAAAATCGGCTTAACTGACTTTAAAGGCACATACCGTGAACCCTGTAATAGAAGGGCCCCATACTGTCAAGTTTGAGCTCAATTATCTCGGTTCCTGGAAAAGGTACAAAAAAGTTGTCAACTGACAAAATGTAAATTATAGTATCAAAAATATTTCGTCAGTCGACTACTTTTTGATATCTCTCACAGGAAATGAGATACATAGGCTCAAAAATGACGATTTGTGGGACATTCTATAAGAGTGATTCTGGAGTAGGCACCCTAAGACGAGAATCCATTCAATAGAAAACTTTAGGTTTCAGTTCTAATTTTAAAGATGTTGCTTTTTTTCAGATCCTCTCCACTACCAAACCTCGACACTCCTCTCACCGAATCCAGTCATCAATCATCGGTTGTCAGCAAAGCGATCAACGAGGTAAGCGAGAGTAGTAGTAGTTAAAAATCTTGGCGTTTATTGCAAAAATCTCATTTTCTATCAATYAAATTTTATTGGTATAGAATCATTATTCTCTGCTGCAATTACTATTTCTAAACGGTCGGGGCTCATTCTCCATCATGCGCCTTTAAAACGGCTATTGTTCTAAAGTTCGCGTTTTCCATCCATTACCTGTTCCCCTGGGTAAATCATGGGAGAGAGAGAAGAATTTTTTTGGCCATAGATCATAACAATCGGGGGTGAAAAAGAAGGGAAAAATAACAATTTGACAGATGTGAGCGAGTTTTTTCTGGATGCCTAGGAAAGAAGAAAGGTTTATCTTTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTCAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTCGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAAGGGTTCGGTATTCTGAGCATCTCTTTTTCAGAATAGAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>417 290 125 84 44 30 10</canonical_bands>
                <polymorphic_bands>417 290 128 125 30 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>172 171 158 125 104 95 56 54 35 21 5 4</canonical_bands>
                <polymorphic_bands>176 172 158 125 104 95 56 54 35 21 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACTACCAAACCTCGACACT</pcr_primer_p1>
		<pcr_primer_p2>AACTTTAGAACAATAGCCGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CACTACCAAACCTCGACACTCCTCTCACCGAATCCAGTCATCAATCATCGGTTGTCAGCAAAGCGATCAACGAGGTAAGCGAGAGTAGTAGTAGTTAAAAATCTTGGCGTTTATTGCAAAAATCTCATTTTCTATCAATTAAATTTTATTGGTATAGAATCATTATTCTCTGCTGCAATTACTATTTCTAAACGGTCGGGGCTCATTCTCCATCATGCGCCTTTAAAACGGCTATTGTTCTAAAGTT</canonical_amplicon>
		<polymorphic_amplicon>CACTACCAAACCTCGACACTCCTCTCACCGAATCCAGTCATCAATCATCGGTTGTCAGCAAAGCGATCAACGAGGTAAGCGAGAGTAGTAGTAGTTAAAAATCTTGGCGTTTATTGCAAAAATCTCATTTTCTATCAATYAAATTTTATTGGTATAGAATCATTATTCTCTGCTGCAATTACTATTTCTAAACGGTCGGGGCTCATTCTCCATCATGCGCCTTTAAAACGGCTATTGTTCTAAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23226</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>72343</contig_pos>
        <strand>+</strand>
        <context>GGTAAGCGAG[A/G]GTAGTAGTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAGTCATCAATCATCGGTTGTCAGCAAAGCGATCAACGAGGTAAGCGAG</left_flank>
        <right_flank>GTAGTAGTAGTTAAAAATCTTGGCGTTTATTGCAAAAATCTCATTTTCTA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATACAAAACAAAGCTGGAACTTCATTTTTTAATAAAAACCTACTTTCCAAAAAATACCTCAATTGGGTGTTCTAAAAAAATCGGCTTAACTGACTTTAAAGGCACATACCGTGAACCCTGTAATAGAAGGGCCCCATACTGTCAAGTTTGAGCTCAATTATCTCGGTTCCTGGAAAAGGTACAAAAAAGTTGTCAACTGACAAAATGTAAATTATAGTATCAAAAATATTTCGTCAGTCGACTACTTTTTGATATCTCTCACAGGAAATGAGATACATAGGCTCAAAAATGACGATTTGTGGGACATTCTATAAGAGTGATTCTGGAGTAGGCACCCTAAGACGAGAATCCATTCAATAGAAAACTTTAGGTTTCAGTTCTAATTTTAAAGATGTTGCTTTTTTTCAGATCCTCTCCACTACCAAACCTCGACACTCCTCTCACCGAATCCAGTCATCAATCATCGGTTGTCAGCAAAGCGATCAACGAGGTAAGCGAGAGTAGTAGTAGTTAAAAATCTTGGCGTTTATTGCAAAAATCTCATTTTCTATCAATTAAATTTTATTGGTATAGAATCATTATTCTCTGCTGCAATTACTATTTCTAAACGGTCGGGGCTCATTCTCCATCATGCGCCTTTAAAACGGCTATTGTTCTAAAGTTCGCGTTTTCCATCCATTACCTGTTCCCCTGGGTAAATCATGGGAGAGAGAGAAGAATTTTTTTGGCCATAGATCATAACAATCGGGGGTGAAAAAGAAGGGAAAAATAACAATTTGACAGATGTGAGCGAGTTTTTTCTGGATGCCTAGGAAAGAAGAAAGGTTTATCTTTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTCAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTCGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGA</canonical>
            <polymorphic>ATACAAAACAAAGCTGGAACTTCATTTTTTAATAAAAACCTACTTTCCAAAAAATACCTCAATTGGGTGTTCTAAAAAAATCGGCTTAACTGACTTTAAAGGCACATACCGTGAACCCTGTAATAGAAGGGCCCCATACTGTCAAGTTTGAGCTCAATTATCTCGGTTCCTGGAAAAGGTACAAAAAAGTTGTCAACTGACAAAATGTAAATTATAGTATCAAAAATATTTCGTCAGTCGACTACTTTTTGATATCTCTCACAGGAAATGAGATACATAGGCTCAAAAATGACGATTTGTGGGACATTCTATAAGAGTGATTCTGGAGTAGGCACCCTAAGACGAGAATCCATTCAATAGAAAACTTTAGGTTTCAGTTCTAATTTTAAAGATGTTGCTTTTTTTCAGATCCTCTCCACTACCAAACCTCGACACTCCTCTCACCGAATCCAGTCATCAATCATCGGTTGTCAGCAAAGCGATCAACGAGGTAAGCGAGRGTAGTAGTAGTTAAAAATCTTGGCGTTTATTGCAAAAATCTCATTTTCTATCAATTAAATTTTATTGGTATAGAATCATTATTCTCTGCTGCAATTACTATTTCTAAACGGTCGGGGCTCATTCTCCATCATGCGCCTTTAAAACGGCTATTGTTCTAAAGTTCGCGTTTTCCATCCATTACCTGTTCCCCTGGGTAAATCATGGGAGAGAGAGAAGAATTTTTTTGGCCATAGATCATAACAATCGGGGGTGAAAAAGAAGGGAAAAATAACAATTTGACAGATGTGAGCGAGTTTTTTCTGGATGCCTAGGAAAGAAGAAAGGTTTATCTTTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTCAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTCGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAACTTTAGGTTTCAGTTCTAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAATAGTAATTGCAGCAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGAAAACTTTAGGTTTCAGTTCTAATTTTAAAGATGTTGCTTTTTTTCAGATCCTCTCCACTACCAAACCTCGACACTCCTCTCACCGAATCCAGTCATCAATCATCGGTTGTCAGCAAAGCGATCAACGAGGTAAGCGAGAGTAGTAGTAGTTAAAAATCTTGGCGTTTATTGCAAAAATCTCATTTTCTATCAATTAAATTTTATTGGTATAGAATCATTATTCTCTGCTGCAATTACTATTTCT</canonical_amplicon>
		<polymorphic_amplicon>AGAAAACTTTAGGTTTCAGTTCTAATTTTAAAGATGTTGCTTTTTTTCAGATCCTCTCCACTACCAAACCTCGACACTCCTCTCACCGAATCCAGTCATCAATCATCGGTTGTCAGCAAAGCGATCAACGAGGTAAGCGAGRGTAGTAGTAGTTAAAAATCTTGGCGTTTATTGCAAAAATCTCATTTTCTATCAATTAAATTTTATTGGTATAGAATCATTATTCTCTGCTGCAATTACTATTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23227</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>72892</contig_pos>
        <strand>+</strand>
        <context>CTTTTTCAGA[A/G]TAGAACTCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGATAACTTGGCTGAAAGGGTTCGGTATTCTGAGCATCTCTTTTTCAGA</left_flank>
        <right_flank>TAGAACTCTAAATTTGAGCTAAACTTGTCAGAAATCTAGACAAAAAAAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAATTAAATTTTATTGGTATAGAATCATTATTCTCTGCTGCAATTACTATTTCTAAACGGTCGGGGCTCATTCTCCATCATGCGCCTTTAAAACGGCTATTGTTCTAAAGTTCGCGTTTTCCATCCATTACCTGTTCCCCTGGGTAAATCATGGGAGAGAGAGAAGAATTTTTTTGGCCATAGATCATAACAATCGGGGGTGAAAAAGAAGGGAAAAATAACAATTTGACAGATGTGAGCGAGTTTTTTCTGGATGCCTAGGAAAGAAGAAAGGTTTATCTTTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTCAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTCGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAAGGGTTCGGTATTCTGAGCATCTCTTTTTCAGAATAGAACTCTAAATTTGAGCTAAACTTGTCAGAAATCTAGACAAAAAAAACTGGAACTGGCGTTCCAATTTTTCCTCTTGTTCTTCTTTTTTCCCCTCTCCTTAAACTTCCTAAATCATCAAAGAACGCCTTCTTTTCAGTCAAGTCTTCTTATAAGCCTCTGAATTTTTTCCAACCAAAACACCCGATTCATCAGTTTGACTTTCAAAAAAAAAGCAAGTTGGAGGGCATACCAGAAGAAATGAACACAACTTTTTTTTGCGTTTGCTTCTTCTATTTTTTTTCTATTTCTAGAAAAAAACATATATTATTTTCATAATCCTTTGCTTTTTTGTTTTTACATGTACCGTAAACACTCTTTTAGAAGGCTACATACATCGTCAACTTTGAGCCAACATATCTCACTTCTTATAATAGATATCAAAAAGTAAGTAACAAATAAAATGTAGCCGATATCATGATAAACATTTTGTCAGTTGACAACTTTTTGATATCTTTTAC</canonical>
            <polymorphic>ATCAATTAAATTTTATTGGTATAGAATCATTATTCTCTGCTGCAATTACTATTTCTAAACGGTCGGGGCTCATTCTCCATCATGCGCCTTTAAAACGGCTATTGTTCTAAAGTTCGCGTTTTCCATCCATTACCTGTTCCCCTGGGTAAATCATGGGAGAGAGAGAAGAATTTTTTTGGCCATAGATCATAACAATCGGGGGTGAAAAAGAAGGGAAAAATAACAATTTGACAGATGTGAGCGAGTTTTTTCTGGATGCCTAGGAAAGAAGAAAGGTTTATCTTTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTCAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTCGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAAGGGTTCGGTATTCTGAGCATCTCTTTTTCAGARTAGAACTCTAAATTTGAGCTAAACTTGTCAGAAATCTAGACAAAAAAAACTGGAACTGGCGTTCCAATTTTTCCTCTTGTTCTTCTTTTTTCCCCTCTCCTTAAACTTCCTAAATCATCAAAGAACGCCTTCTTTTCAGTCAAGTCTTCTTATAAGCCTCTGAATTTTTTCCAACCAAAACACCCGATTCATCAGTTTGACTTTCAAAAAAAAAGCAAGTTGGAGGGCATACCAGAAGAAATGAACACAACTTTTTTTTGCGTTTGCTTCTTCTATTTTTTTTCTATTTCTAGAAAAAAACATATATTATTTTCATAATCCTTTGCTTTTTTGTTTTTACATGTACCGTAAACACTCTTTTAGAAGGCTACATACATCGTCAACTTTGAGCCAACATATCTCACTTCTTATAATAGATATCAAAAAGTAAGTAACAAATAAAATGTAGCCGATATCATGATAAACATTTTGTCAGTTGACAACTTTTTGATATCTTTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGGGTCTAATGGAATG</pcr_primer_p1>
		<pcr_primer_p2>AACAAGAGGAAAAATTGGAAC</pcr_primer_p2>
		<pcr_amplicon_size>298</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTCAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTCGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAAGGGTTCGGTATTCTGAGCATCTCTTTTTCAGAATAGAACTCTAAATTTGAGCTAAACTTGTCAGAAATCTAGACAAAAAAAACTGGAACTGGCGTTCCAATTTTTCCTCTTGTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTCAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTCGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAAGGGTTCGGTATTCTGAGCATCTCTTTTTCAGARTAGAACTCTAAATTTGAGCTAAACTTGTCAGAAATCTAGACAAAAAAAACTGGAACTGGCGTTCCAATTTTTCCTCTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23228</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>146492</contig_pos>
        <strand>+</strand>
        <context>CTAAAACGTT[C/T]GTGATGTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTTATTCCGATTTTTGACATATTCAATTCAAGTACTTTTCTAAAACGTT</left_flank>
        <right_flank>GTGATGTTTCCACCAATTCTTTGACCCTGAAAAGGCAGCCAATGGCTAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGTGGTTTGTTACTAGGTACAATGGGGTTATCTAGGTTGCTCATCTTCCACGGGGCATATCTCGCTTCGTTGAATTTCTATCTGAAAAGTGTCAACTACAAAAATGAAGCTCTATTTTTGTTTAATACTCTTTGAACTGTTTAGGCAAACTCAAAAAGTTTGAGGTTATTTTTAGGATTTTGAAAATGTAAAGTTTGCTGTTAACTGATGGAACGAGTTCCACACCTTCAACTTTGATCCCTTATATCTTATTTTCTGTAAAAGATAGAAAAAAGTTGTCAACTGATAAATTGTTTATTATAACATCAGAAGTGCTTTGTCAGTTTACAATTTTCTGATATCTCTGACATGAACTGAGATGAACTAGCTGAAAGTTAAAAGTTAGGTTTACGGTAGTATCCTTCCATATTCCTGCAAACTGAATGCAATTTTTTGTATGTATTTAATTGTTATTCCGATTTTTGACATATTCAATTCAAGTACTTTTCTAAAACGTTCGTGATGTTTCCACCAATTCTTTGACCCTGAAAAGGCAGCCAATGGCTAATTGTTTTCTAATAGCCCATGTAATTTTTCCAACAACACTCTCTCTCTCGTGATTTTAGTTCTTCAGGTCATCCGAATAGCCACTTTAATTTGCTATCTTACACCCAAATGACGTTTAAAACAGTTTGCCGAAGTCGAGAATGACTTTAGATCAGATCAATCATCGCTTTCGGTTCTTCAGTTCGATTCGTCGTTAAATATGATAGTATCCCTTTTCTTGAGTATCCTTCCTTTTCCTTCTCTTTTGGAACGTATCACAGTTTAAAGTTCCGTTGCCCCTAACAAAAAAGAAAAGAGATAGAAAACCAGCGATGGACACTATTACTGTACCGTTTCTTTTTTTCCAGAGAGACAAAGGTTTGGACAATTAGGCTTGGACAATGACAACAAGTGTACTCAAAACGGTCATTAGAGATGTTACACACTCTCTTTTGACTTGAGAACATTGAAAA</canonical>
            <polymorphic>TTTGTGGTTTGTTACTAGGTACAATGGGGTTATCTAGGTTGCTCATCTTCCACGGGGCATATCTCGCTTCGTTGAATTTCTATCTGAAAAGTGTCAACTACAAAAATGAAGCTCTATTTTTGTTTAATACTCTTTGAACTGTTTAGGCAAACTCAAAAAGTTTGAGGTTATTTTTAGGATTTTGAAAATGTAAAGTTTGCTGTTAACTGATGGAACGAGTTCCACACCTTCAACTTTGATCCCTTATATCTTATTTTCTGTAAAAGATAGAAAAAAGTTGTCAACTGATAAATTGTTTATTATAACATCAGAAGTGCTTTGTCAGTTTACAATTTTCTGATATCTCTGACATGAACTGAGATGAACTAGCTGAAAGTTAAAAGTTAGGTTTACGGTAGTATCCTTCCATATTCCTGCAAACTGAATGCAATTTTTTGTATGTATTTAATTGTTATTCCGATTTTTGACATATTCAATTCAAGTACTTTTCTAAAACGTTYGTGATGTTTCCACCAATTCTTTGACCCTGAAAAGGCAGCCAATGGCTAATTGTTTTCTAATAGCCCATGTAATTTTTCCAACAACACTCTCTCTCTCGTGATTTTAGTTCTTCAGGTCATCCGAATAGCCACTTTAATTTGCTATCTTACACCCAAATGACGTTTAAAACAGTTTGCCGAAGTCGAGAATGACTTTAGATCAGATCAATCATCGCTTTCGGTTCTTCAGTTCGATTCGTCGTTAAATATGATAGTATCCCTTTTCTTGAGTATCCTTCCTTTTCCTTCTCTTTTGGAACGTATCACAGTTTAAAGTTCCGTTGCCCCTAACAAAAAAGAAAAGAGATAGAAAACCAGCGATGGACACTATTACTGTACCGTTTCTTTTTTTCCAGAGAGACAAAGGTTTGGACAATTAGGCTTGGACAATGACAACAAGTGTACTCAAAACGGTCATTAGAGATGTTACACACTCTCTTTTGACTTGAGAACATTGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>500 127 108 97 87 81</canonical_bands>
                <polymorphic_bands>597 127 108 87 81</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATATTCCTGCAAACTGAATG</pcr_primer_p1>
		<pcr_primer_p2>TGGGTGTAAGATAGCAAATTAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATATTCCTGCAAACTGAATGCAATTTTTTGTATGTATTTAATTGTTATTCCGATTTTTGACATATTCAATTCAAGTACTTTTCTAAAACGTTCGTGATGTTTCCACCAATTCTTTGACCCTGAAAAGGCAGCCAATGGCTAATTGTTTTCTAATAGCCCATGTAATTTTTCCAACAACACTCTCTCTCTCGTGATTTTAGTTCTTCAGGTCATCCGAATAGCCACTTTAATTTGCTATCTTACACCCA</canonical_amplicon>
		<polymorphic_amplicon>CATATTCCTGCAAACTGAATGCAATTTTTTGTATGTATTTAATTGTTATTCCGATTTTTGACATATTCAATTCAAGTACTTTTCTAAAACGTTYGTGATGTTTCCACCAATTCTTTGACCCTGAAAAGGCAGCCAATGGCTAATTGTTTTCTAATAGCCCATGTAATTTTTCCAACAACACTCTCTCTCTCGTGATTTTAGTTCTTCAGGTCATCCGAATAGCCACTTTAATTTGCTATCTTACACCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23229</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>146511</contig_pos>
        <strand>+</strand>
        <context>TCCACCAATT[A/C]TTTGACCCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATATTCAATTCAAGTACTTTTCTAAAACGTTCGTGATGTTTCCACCAATT</left_flank>
        <right_flank>TTTGACCCTGAAAAGGCAGCCAATGGCTAATTGTTTTCTAATAGCCCATG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACAATGGGGTTATCTAGGTTGCTCATCTTCCACGGGGCATATCTCGCTTCGTTGAATTTCTATCTGAAAAGTGTCAACTACAAAAATGAAGCTCTATTTTTGTTTAATACTCTTTGAACTGTTTAGGCAAACTCAAAAAGTTTGAGGTTATTTTTAGGATTTTGAAAATGTAAAGTTTGCTGTTAACTGATGGAACGAGTTCCACACCTTCAACTTTGATCCCTTATATCTTATTTTCTGTAAAAGATAGAAAAAAGTTGTCAACTGATAAATTGTTTATTATAACATCAGAAGTGCTTTGTCAGTTTACAATTTTCTGATATCTCTGACATGAACTGAGATGAACTAGCTGAAAGTTAAAAGTTAGGTTTACGGTAGTATCCTTCCATATTCCTGCAAACTGAATGCAATTTTTTGTATGTATTTAATTGTTATTCCGATTTTTGACATATTCAATTCAAGTACTTTTCTAAAACGTTCGTGATGTTTCCACCAATTCTTTGACCCTGAAAAGGCAGCCAATGGCTAATTGTTTTCTAATAGCCCATGTAATTTTTCCAACAACACTCTCTCTCTCGTGATTTTAGTTCTTCAGGTCATCCGAATAGCCACTTTAATTTGCTATCTTACACCCAAATGACGTTTAAAACAGTTTGCCGAAGTCGAGAATGACTTTAGATCAGATCAATCATCGCTTTCGGTTCTTCAGTTCGATTCGTCGTTAAATATGATAGTATCCCTTTTCTTGAGTATCCTTCCTTTTCCTTCTCTTTTGGAACGTATCACAGTTTAAAGTTCCGTTGCCCCTAACAAAAAAGAAAAGAGATAGAAAACCAGCGATGGACACTATTACTGTACCGTTTCTTTTTTTCCAGAGAGACAAAGGTTTGGACAATTAGGCTTGGACAATGACAACAAGTGTACTCAAAACGGTCATTAGAGATGTTACACACTCTCTTTTGACTTGAGAACATTGAAAAAAGTGTGTTGGAAGTTTTT</canonical>
            <polymorphic>TACAATGGGGTTATCTAGGTTGCTCATCTTCCACGGGGCATATCTCGCTTCGTTGAATTTCTATCTGAAAAGTGTCAACTACAAAAATGAAGCTCTATTTTTGTTTAATACTCTTTGAACTGTTTAGGCAAACTCAAAAAGTTTGAGGTTATTTTTAGGATTTTGAAAATGTAAAGTTTGCTGTTAACTGATGGAACGAGTTCCACACCTTCAACTTTGATCCCTTATATCTTATTTTCTGTAAAAGATAGAAAAAAGTTGTCAACTGATAAATTGTTTATTATAACATCAGAAGTGCTTTGTCAGTTTACAATTTTCTGATATCTCTGACATGAACTGAGATGAACTAGCTGAAAGTTAAAAGTTAGGTTTACGGTAGTATCCTTCCATATTCCTGCAAACTGAATGCAATTTTTTGTATGTATTTAATTGTTATTCCGATTTTTGACATATTCAATTCAAGTACTTTTCTAAAACGTTCGTGATGTTTCCACCAATTMTTTGACCCTGAAAAGGCAGCCAATGGCTAATTGTTTTCTAATAGCCCATGTAATTTTTCCAACAACACTCTCTCTCTCGTGATTTTAGTTCTTCAGGTCATCCGAATAGCCACTTTAATTTGCTATCTTACACCCAAATGACGTTTAAAACAGTTTGCCGAAGTCGAGAATGACTTTAGATCAGATCAATCATCGCTTTCGGTTCTTCAGTTCGATTCGTCGTTAAATATGATAGTATCCCTTTTCTTGAGTATCCTTCCTTTTCCTTCTCTTTTGGAACGTATCACAGTTTAAAGTTCCGTTGCCCCTAACAAAAAAGAAAAGAGATAGAAAACCAGCGATGGACACTATTACTGTACCGTTTCTTTTTTTCCAGAGAGACAAAGGTTTGGACAATTAGGCTTGGACAATGACAACAAGTGTACTCAAAACGGTCATTAGAGATGTTACACACTCTCTTTTGACTTGAGAACATTGAAAAAAGTGTGTTGGAAGTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATATTCCTGCAAACTGAATG</pcr_primer_p1>
		<pcr_primer_p2>TGGGTGTAAGATAGCAAATTAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATATTCCTGCAAACTGAATGCAATTTTTTGTATGTATTTAATTGTTATTCCGATTTTTGACATATTCAATTCAAGTACTTTTCTAAAACGTTCGTGATGTTTCCACCAATTCTTTGACCCTGAAAAGGCAGCCAATGGCTAATTGTTTTCTAATAGCCCATGTAATTTTTCCAACAACACTCTCTCTCTCGTGATTTTAGTTCTTCAGGTCATCCGAATAGCCACTTTAATTTGCTATCTTACACCCA</canonical_amplicon>
		<polymorphic_amplicon>CATATTCCTGCAAACTGAATGCAATTTTTTGTATGTATTTAATTGTTATTCCGATTTTTGACATATTCAATTCAAGTACTTTTCTAAAACGTTCGTGATGTTTCCACCAATTMTTTGACCCTGAAAAGGCAGCCAATGGCTAATTGTTTTCTAATAGCCCATGTAATTTTTCCAACAACACTCTCTCTCTCGTGATTTTAGTTCTTCAGGTCATCCGAATAGCCACTTTAATTTGCTATCTTACACCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23230</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>146541</contig_pos>
        <strand>+</strand>
        <context>CCAATGGCTA[A/T]TTGTTTTCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGTGATGTTTCCACCAATTCTTTGACCCTGAAAAGGCAGCCAATGGCTA</left_flank>
        <right_flank>TTGTTTTCTAATAGCCCATGTAATTTTTCCAACAACACTCTCTCTCTCGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCACGGGGCATATCTCGCTTCGTTGAATTTCTATCTGAAAAGTGTCAACTACAAAAATGAAGCTCTATTTTTGTTTAATACTCTTTGAACTGTTTAGGCAAACTCAAAAAGTTTGAGGTTATTTTTAGGATTTTGAAAATGTAAAGTTTGCTGTTAACTGATGGAACGAGTTCCACACCTTCAACTTTGATCCCTTATATCTTATTTTCTGTAAAAGATAGAAAAAAGTTGTCAACTGATAAATTGTTTATTATAACATCAGAAGTGCTTTGTCAGTTTACAATTTTCTGATATCTCTGACATGAACTGAGATGAACTAGCTGAAAGTTAAAAGTTAGGTTTACGGTAGTATCCTTCCATATTCCTGCAAACTGAATGCAATTTTTTGTATGTATTTAATTGTTATTCCGATTTTTGACATATTCAATTCAAGTACTTTTCTAAAACGTTCGTGATGTTTCCACCAATTCTTTGACCCTGAAAAGGCAGCCAATGGCTAATTGTTTTCTAATAGCCCATGTAATTTTTCCAACAACACTCTCTCTCTCGTGATTTTAGTTCTTCAGGTCATCCGAATAGCCACTTTAATTTGCTATCTTACACCCAAATGACGTTTAAAACAGTTTGCCGAAGTCGAGAATGACTTTAGATCAGATCAATCATCGCTTTCGGTTCTTCAGTTCGATTCGTCGTTAAATATGATAGTATCCCTTTTCTTGAGTATCCTTCCTTTTCCTTCTCTTTTGGAACGTATCACAGTTTAAAGTTCCGTTGCCCCTAACAAAAAAGAAAAGAGATAGAAAACCAGCGATGGACACTATTACTGTACCGTTTCTTTTTTTCCAGAGAGACAAAGGTTTGGACAATTAGGCTTGGACAATGACAACAAGTGTACTCAAAACGGTCATTAGAGATGTTACACACTCTCTTTTGACTTGAGAACATTGAAAAAAGTGTGTTGGAAGTTTTTGTTTGCGCGGGAAGGGCAGCAACTTGGGTT</canonical>
            <polymorphic>CCACGGGGCATATCTCGCTTCGTTGAATTTCTATCTGAAAAGTGTCAACTACAAAAATGAAGCTCTATTTTTGTTTAATACTCTTTGAACTGTTTAGGCAAACTCAAAAAGTTTGAGGTTATTTTTAGGATTTTGAAAATGTAAAGTTTGCTGTTAACTGATGGAACGAGTTCCACACCTTCAACTTTGATCCCTTATATCTTATTTTCTGTAAAAGATAGAAAAAAGTTGTCAACTGATAAATTGTTTATTATAACATCAGAAGTGCTTTGTCAGTTTACAATTTTCTGATATCTCTGACATGAACTGAGATGAACTAGCTGAAAGTTAAAAGTTAGGTTTACGGTAGTATCCTTCCATATTCCTGCAAACTGAATGCAATTTTTTGTATGTATTTAATTGTTATTCCGATTTTTGACATATTCAATTCAAGTACTTTTCTAAAACGTTCGTGATGTTTCCACCAATTCTTTGACCCTGAAAAGGCAGCCAATGGCTAWTTGTTTTCTAATAGCCCATGTAATTTTTCCAACAACACTCTCTCTCTCGTGATTTTAGTTCTTCAGGTCATCCGAATAGCCACTTTAATTTGCTATCTTACACCCAAATGACGTTTAAAACAGTTTGCCGAAGTCGAGAATGACTTTAGATCAGATCAATCATCGCTTTCGGTTCTTCAGTTCGATTCGTCGTTAAATATGATAGTATCCCTTTTCTTGAGTATCCTTCCTTTTCCTTCTCTTTTGGAACGTATCACAGTTTAAAGTTCCGTTGCCCCTAACAAAAAAGAAAAGAGATAGAAAACCAGCGATGGACACTATTACTGTACCGTTTCTTTTTTTCCAGAGAGACAAAGGTTTGGACAATTAGGCTTGGACAATGACAACAAGTGTACTCAAAACGGTCATTAGAGATGTTACACACTCTCTTTTGACTTGAGAACATTGAAAAAAGTGTGTTGGAAGTTTTTGTTTGCGCGGGAAGGGCAGCAACTTGGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>278 216 136 98 65 40 40 33 28 25 23 18</canonical_bands>
                <polymorphic_bands>278 216 136 98 65 56 40 40 28 25 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATATTCCTGCAAACTGAATG</pcr_primer_p1>
		<pcr_primer_p2>TGGGTGTAAGATAGCAAATTAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATATTCCTGCAAACTGAATGCAATTTTTTGTATGTATTTAATTGTTATTCCGATTTTTGACATATTCAATTCAAGTACTTTTCTAAAACGTTCGTGATGTTTCCACCAATTCTTTGACCCTGAAAAGGCAGCCAATGGCTAATTGTTTTCTAATAGCCCATGTAATTTTTCCAACAACACTCTCTCTCTCGTGATTTTAGTTCTTCAGGTCATCCGAATAGCCACTTTAATTTGCTATCTTACACCCA</canonical_amplicon>
		<polymorphic_amplicon>CATATTCCTGCAAACTGAATGCAATTTTTTGTATGTATTTAATTGTTATTCCGATTTTTGACATATTCAATTCAAGTACTTTTCTAAAACGTTCGTGATGTTTCCACCAATTCTTTGACCCTGAAAAGGCAGCCAATGGCTAWTTGTTTTCTAATAGCCCATGTAATTTTTCCAACAACACTCTCTCTCTCGTGATTTTAGTTCTTCAGGTCATCCGAATAGCCACTTTAATTTGCTATCTTACACCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23231</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>146607</contig_pos>
        <strand>+</strand>
        <context>TAGTTCTTCA[G/T]GTCATCCGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCATGTAATTTTTCCAACAACACTCTCTCTCTCGTGATTTTAGTTCTTCA</left_flank>
        <right_flank>GTCATCCGAATAGCCACTTTAATTTGCTATCTTACACCCAAATGACGTTT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTGTTTAATACTCTTTGAACTGTTTAGGCAAACTCAAAAAGTTTGAGGTTATTTTTAGGATTTTGAAAATGTAAAGTTTGCTGTTAACTGATGGAACGAGTTCCACACCTTCAACTTTGATCCCTTATATCTTATTTTCTGTAAAAGATAGAAAAAAGTTGTCAACTGATAAATTGTTTATTATAACATCAGAAGTGCTTTGTCAGTTTACAATTTTCTGATATCTCTGACATGAACTGAGATGAACTAGCTGAAAGTTAAAAGTTAGGTTTACGGTAGTATCCTTCCATATTCCTGCAAACTGAATGCAATTTTTTGTATGTATTTAATTGTTATTCCGATTTTTGACATATTCAATTCAAGTACTTTTCTAAAACGTTCGTGATGTTTCCACCAATTCTTTGACCCTGAAAAGGCAGCCAATGGCTAATTGTTTTCTAATAGCCCATGTAATTTTTCCAACAACACTCTCTCTCTCGTGATTTTAGTTCTTCAGGTCATCCGAATAGCCACTTTAATTTGCTATCTTACACCCAAATGACGTTTAAAACAGTTTGCCGAAGTCGAGAATGACTTTAGATCAGATCAATCATCGCTTTCGGTTCTTCAGTTCGATTCGTCGTTAAATATGATAGTATCCCTTTTCTTGAGTATCCTTCCTTTTCCTTCTCTTTTGGAACGTATCACAGTTTAAAGTTCCGTTGCCCCTAACAAAAAAGAAAAGAGATAGAAAACCAGCGATGGACACTATTACTGTACCGTTTCTTTTTTTCCAGAGAGACAAAGGTTTGGACAATTAGGCTTGGACAATGACAACAAGTGTACTCAAAACGGTCATTAGAGATGTTACACACTCTCTTTTGACTTGAGAACATTGAAAAAAGTGTGTTGGAAGTTTTTGTTTGCGCGGGAAGGGCAGCAACTTGGGTTTTGATAGACACGATGATGGACGAGGGTCAAGTAAATGAAACGGAAAGTGATTGATACAAAAAAACA</canonical>
            <polymorphic>ATTTTTGTTTAATACTCTTTGAACTGTTTAGGCAAACTCAAAAAGTTTGAGGTTATTTTTAGGATTTTGAAAATGTAAAGTTTGCTGTTAACTGATGGAACGAGTTCCACACCTTCAACTTTGATCCCTTATATCTTATTTTCTGTAAAAGATAGAAAAAAGTTGTCAACTGATAAATTGTTTATTATAACATCAGAAGTGCTTTGTCAGTTTACAATTTTCTGATATCTCTGACATGAACTGAGATGAACTAGCTGAAAGTTAAAAGTTAGGTTTACGGTAGTATCCTTCCATATTCCTGCAAACTGAATGCAATTTTTTGTATGTATTTAATTGTTATTCCGATTTTTGACATATTCAATTCAAGTACTTTTCTAAAACGTTCGTGATGTTTCCACCAATTCTTTGACCCTGAAAAGGCAGCCAATGGCTAATTGTTTTCTAATAGCCCATGTAATTTTTCCAACAACACTCTCTCTCTCGTGATTTTAGTTCTTCAKGTCATCCGAATAGCCACTTTAATTTGCTATCTTACACCCAAATGACGTTTAAAACAGTTTGCCGAAGTCGAGAATGACTTTAGATCAGATCAATCATCGCTTTCGGTTCTTCAGTTCGATTCGTCGTTAAATATGATAGTATCCCTTTTCTTGAGTATCCTTCCTTTTCCTTCTCTTTTGGAACGTATCACAGTTTAAAGTTCCGTTGCCCCTAACAAAAAAGAAAAGAGATAGAAAACCAGCGATGGACACTATTACTGTACCGTTTCTTTTTTTCCAGAGAGACAAAGGTTTGGACAATTAGGCTTGGACAATGACAACAAGTGTACTCAAAACGGTCATTAGAGATGTTACACACTCTCTTTTGACTTGAGAACATTGAAAAAAGTGTGTTGGAAGTTTTTGTTTGCGCGGGAAGGGCAGCAACTTGGGTTTTGATAGACACGATGATGGACGAGGGTCAAGTAAATGAAACGGAAAGTGATTGATACAAAAAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAATAGCCCATGTAATTTTTC</pcr_primer_p1>
		<pcr_primer_p2>GTGATACGTTCCAAAAGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTAATAGCCCATGTAATTTTTCCAACAACACTCTCTCTCTCGTGATTTTAGTTCTTCAGGTCATCCGAATAGCCACTTTAATTTGCTATCTTACACCCAAATGACGTTTAAAACAGTTTGCCGAAGTCGAGAATGACTTTAGATCAGATCAATCATCGCTTTCGGTTCTTCAGTTCGATTCGTCGTTAAATATGATAGTATCCCTTTTCTTGAGTATCCTTCCTTTTCCTTCTCTTTTGGAACGTATCAC</canonical_amplicon>
		<polymorphic_amplicon>TCTAATAGCCCATGTAATTTTTCCAACAACACTCTCTCTCTCGTGATTTTAGTTCTTCAKGTCATCCGAATAGCCACTTTAATTTGCTATCTTACACCCAAATGACGTTTAAAACAGTTTGCCGAAGTCGAGAATGACTTTAGATCAGATCAATCATCGCTTTCGGTTCTTCAGTTCGATTCGTCGTTAAATATGATAGTATCCCTTTTCTTGAGTATCCTTCCTTTTCCTTCTCTTTTGGAACGTATCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23232</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>149924</contig_pos>
        <strand>+</strand>
        <context>GGCCTAGAAC[A/G]ATTGTGCAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGTTCGATGAGTCACGCAAGAAGACACTGCCTTGGCATGGGCCTAGAAC</left_flank>
        <right_flank>ATTGTGCAACGACTACAATTGTCGATCATGACTTGTGAGATGTGTGAAGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTTCTGATTTTCCACAGATGTAAGCATAGGTTGGATCATTGTCTTTGATTTCGGAGAAGCGAGGAATGAAGTCCGCTGGAGACGGCTTCAAAATCACAGTGTTCACTTTTAGTATCTCTTCTTGGCCGGAAGACTAAAATGTATATAAAAGTTTTAATGACCTGAAAAAATTCCTATACCAAATTGACATTGTCAGAGAAAATGAGGAAGTTTCCTTTTCCATTCGGAGCAGCTGGAGTGAAGTCGTGGACAGAATTGATGTGGTTGGTGAACGGACGAAGCCCAACAGAATGCATTTGATCTTTCAATTGGGGATATCTCATTGCTAAATGAAAGAAGCGGATGTCACTTGAATTCTCGATAATCGGTTCAGTTGGACACAAGATTCCAATACGAATGCTTTTGCAGTCGCGAGTTCTCAATTGCTGACATGGAGTGAAAATTGTGCAGTTCGATGAGTCACGCAAGAAGACACTGCCTTGGCATGGGCCTAGAACAATTGTGCAACGACTACAATTGTCGATCATGACTTGTGAGATGTGTGAAGGAAGAGGATTGCTGAGTCCTGAACACATCATAGATTTGTCTTCGCCCACGGATTTTTAGTCACACGATACAAATTTCCCACTGGATTACTCAAGCCGTAAGATGACGTCATGTCTTAGTTTCTTTTTAGCCCTTCATTCAATAAAAAACAGAGATGCTTTAAAGTTAATCTTCCTAAGCTCAGAATATTAGGTTATTCAAAAAGTAATGCGCGTTTTTTGATTCATTTTAACTTCATGCAAAACTGAAACACGATAAGATTGATCAAGGGGGTTTTCTCCATCATTTTCGACCACAACGCATACTCAAAGATCAACAACAAAGATAGCTGGAAGTCGAGGTAGATCGCACTAAACGCGCATTACTTTTCGAACAACCTAATAGTAATCTTATACTATAATGTTATGCCGATGAACCTTGCTGGCGAAATTCTATTAAATGGCCTATCGGAG</canonical>
            <polymorphic>TGGTTCTGATTTTCCACAGATGTAAGCATAGGTTGGATCATTGTCTTTGATTTCGGAGAAGCGAGGAATGAAGTCCGCTGGAGACGGCTTCAAAATCACAGTGTTCACTTTTAGTATCTCTTCTTGGCCGGAAGACTAAAATGTATATAAAAGTTTTAATGACCTGAAAAAATTCCTATACCAAATTGACATTGTCAGAGAAAATGAGGAAGTTTCCTTTTCCATTCGGAGCAGCTGGAGTGAAGTCGTGGACAGAATTGATGTGGTTGGTGAACGGACGAAGCCCAACAGAATGCATTTGATCTTTCAATTGGGGATATCTCATTGCTAAATGAAAGAAGCGGATGTCACTTGAATTCTCGATAATCGGTTCAGTTGGACACAAGATTCCAATACGAATGCTTTTGCAGTCGCGAGTTCTCAATTGCTGACATGGAGTGAAAATTGTGCAGTTCGATGAGTCACGCAAGAAGACACTGCCTTGGCATGGGCCTAGAACRATTGTGCAACGACTACAATTGTCGATCATGACTTGTGAGATGTGTGAAGGAAGAGGATTGCTGAGTCCTGAACACATCATAGATTTGTCTTCGCCCACGGATTTTTAGTCACACGATACAAATTTCCCACTGGATTACTCAAGCCGTAAGATGACGTCATGTCTTAGTTTCTTTTTAGCCCTTCATTCAATAAAAAACAGAGATGCTTTAAAGTTAATCTTCCTAAGCTCAGAATATTAGGTTATTCAAAAAGTAATGCGCGTTTTTTGATTCATTTTAACTTCATGCAAAACTGAAACACGATAAGATTGATCAAGGGGGTTTTCTCCATCATTTTCGACCACAACGCATACTCAAAGATCAACAACAAAGATAGCTGGAAGTCGAGGTAGATCGCACTAAACGCGCATTACTTTTCGAACAACCTAATAGTAATCTTATACTATAATGTTATGCCGATGAACCTTGCTGGCGAAATTCTATTAAATGGCCTATCGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>484 308 114 77 17</canonical_bands>
                <polymorphic_bands>484 308 114 94</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>355 170 104 72 68 57 53 46 25 20 17 13</canonical_bands>
                <polymorphic_bands>355 170 104 74 72 68 53 46 25 20 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGATGTCACTTGAATTCTC</pcr_primer_p1>
		<pcr_primer_p2>AAGACAAATCTATGATGTGTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGGATGTCACTTGAATTCTCGATAATCGGTTCAGTTGGACACAAGATTCCAATACGAATGCTTTTGCAGTCGCGAGTTCTCAATTGCTGACATGGAGTGAAAATTGTGCAGTTCGATGAGTCACGCAAGAAGACACTGCCTTGGCATGGGCCTAGAACAATTGTGCAACGACTACAATTGTCGATCATGACTTGTGAGATGTGTGAAGGAAGAGGATTGCTGAGTCCTGAACACATCATAGATTTGTCTT</canonical_amplicon>
		<polymorphic_amplicon>CGGATGTCACTTGAATTCTCGATAATCGGTTCAGTTGGACACAAGATTCCAATACGAATGCTTTTGCAGTCGCGAGTTCTCAATTGCTGACATGGAGTGAAAATTGTGCAGTTCGATGAGTCACGCAAGAAGACACTGCCTTGGCATGGGCCTAGAACRATTGTGCAACGACTACAATTGTCGATCATGACTTGTGAGATGTGTGAAGGAAGAGGATTGCTGAGTCCTGAACACATCATAGATTTGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23233</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>149819</contig_pos>
        <strand>+</strand>
        <context>AGATTCCAAT[A/G]CGAATGCTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGTCACTTGAATTCTCGATAATCGGTTCAGTTGGACACAAGATTCCAAT</left_flank>
        <right_flank>CGAATGCTTTTGCAGTCGCGAGTTCTCAATTGCTGACATGGAGTGAAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGATCGACAGTTTTGACTTCCACATCATACGAAGACATGACTTCCATTTTAGCCTTGTAGACACAGTGCAACAACTCGATAGCCGAGTCACCCAACTCGTCAACTGGTTCTGATTTTCCACAGATGTAAGCATAGGTTGGATCATTGTCTTTGATTTCGGAGAAGCGAGGAATGAAGTCCGCTGGAGACGGCTTCAAAATCACAGTGTTCACTTTTAGTATCTCTTCTTGGCCGGAAGACTAAAATGTATATAAAAGTTTTAATGACCTGAAAAAATTCCTATACCAAATTGACATTGTCAGAGAAAATGAGGAAGTTTCCTTTTCCATTCGGAGCAGCTGGAGTGAAGTCGTGGACAGAATTGATGTGGTTGGTGAACGGACGAAGCCCAACAGAATGCATTTGATCTTTCAATTGGGGATATCTCATTGCTAAATGAAAGAAGCGGATGTCACTTGAATTCTCGATAATCGGTTCAGTTGGACACAAGATTCCAATACGAATGCTTTTGCAGTCGCGAGTTCTCAATTGCTGACATGGAGTGAAAATTGTGCAGTTCGATGAGTCACGCAAGAAGACACTGCCTTGGCATGGGCCTAGAACAATTGTGCAACGACTACAATTGTCGATCATGACTTGTGAGATGTGTGAAGGAAGAGGATTGCTGAGTCCTGAACACATCATAGATTTGTCTTCGCCCACGGATTTTTAGTCACACGATACAAATTTCCCACTGGATTACTCAAGCCGTAAGATGACGTCATGTCTTAGTTTCTTTTTAGCCCTTCATTCAATAAAAAACAGAGATGCTTTAAAGTTAATCTTCCTAAGCTCAGAATATTAGGTTATTCAAAAAGTAATGCGCGTTTTTTGATTCATTTTAACTTCATGCAAAACTGAAACACGATAAGATTGATCAAGGGGGTTTTCTCCATCATTTTCGACCACAACGCATACTCAAAGATCAACAACAAAGATAGCTGGAAGTCGAGGTAGATC</canonical>
            <polymorphic>GGGATCGACAGTTTTGACTTCCACATCATACGAAGACATGACTTCCATTTTAGCCTTGTAGACACAGTGCAACAACTCGATAGCCGAGTCACCCAACTCGTCAACTGGTTCTGATTTTCCACAGATGTAAGCATAGGTTGGATCATTGTCTTTGATTTCGGAGAAGCGAGGAATGAAGTCCGCTGGAGACGGCTTCAAAATCACAGTGTTCACTTTTAGTATCTCTTCTTGGCCGGAAGACTAAAATGTATATAAAAGTTTTAATGACCTGAAAAAATTCCTATACCAAATTGACATTGTCAGAGAAAATGAGGAAGTTTCCTTTTCCATTCGGAGCAGCTGGAGTGAAGTCGTGGACAGAATTGATGTGGTTGGTGAACGGACGAAGCCCAACAGAATGCATTTGATCTTTCAATTGGGGATATCTCATTGCTAAATGAAAGAAGCGGATGTCACTTGAATTCTCGATAATCGGTTCAGTTGGACACAAGATTCCAATRCGAATGCTTTTGCAGTCGCGAGTTCTCAATTGCTGACATGGAGTGAAAATTGTGCAGTTCGATGAGTCACGCAAGAAGACACTGCCTTGGCATGGGCCTAGAACAATTGTGCAACGACTACAATTGTCGATCATGACTTGTGAGATGTGTGAAGGAAGAGGATTGCTGAGTCCTGAACACATCATAGATTTGTCTTCGCCCACGGATTTTTAGTCACACGATACAAATTTCCCACTGGATTACTCAAGCCGTAAGATGACGTCATGTCTTAGTTTCTTTTTAGCCCTTCATTCAATAAAAAACAGAGATGCTTTAAAGTTAATCTTCCTAAGCTCAGAATATTAGGTTATTCAAAAAGTAATGCGCGTTTTTTGATTCATTTTAACTTCATGCAAAACTGAAACACGATAAGATTGATCAAGGGGGTTTTCTCCATCATTTTCGACCACAACGCATACTCAAAGATCAACAACAAAGATAGCTGGAAGTCGAGGTAGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATCTTTCAATTGGGGATA</pcr_primer_p1>
		<pcr_primer_p2>CTTCACACATCTCACAAGTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGATCTTTCAATTGGGGATATCTCATTGCTAAATGAAAGAAGCGGATGTCACTTGAATTCTCGATAATCGGTTCAGTTGGACACAAGATTCCAATACGAATGCTTTTGCAGTCGCGAGTTCTCAATTGCTGACATGGAGTGAAAATTGTGCAGTTCGATGAGTCACGCAAGAAGACACTGCCTTGGCATGGGCCTAGAACAATTGTGCAACGACTACAATTGTCGATCATGACTTGTGAGATGTGTGAAG</canonical_amplicon>
		<polymorphic_amplicon>TGATCTTTCAATTGGGGATATCTCATTGCTAAATGAAAGAAGCGGATGTCACTTGAATTCTCGATAATCGGTTCAGTTGGACACAAGATTCCAATRCGAATGCTTTTGCAGTCGCGAGTTCTCAATTGCTGACATGGAGTGAAAATTGTGCAGTTCGATGAGTCACGCAAGAAGACACTGCCTTGGCATGGGCCTAGAACAATTGTGCAACGACTACAATTGTCGATCATGACTTGTGAGATGTGTGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23234</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>157871</contig_pos>
        <strand>+</strand>
        <context>TGGGCCTCGC[A/G]CTTGTTTTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGC</left_flank>
        <right_flank>CTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTGTTGTTGTCACTAGTACCAAAACGTTCGGACTAGTTTCACTTTCAGGCTTCACTAAGAAATTTAATGCAAAATCGAAAGGTGTCGGATCATCTTCTGAAATCATATAATATTTTTAACATCTTCCTTTGAAAATACCATCTTCAAAGACCCCACCGTCTGAGCGTGTGGACAAATGAAATTTGAACGCGAGAAGAGCAAGAAGAGATGCCAAGAAGAGATAGGCTAGTATTGGTATCCGTCTGGAAACCAGCATCTGGAAATCTTTTCGTGAATTTTGAAGAAGTAAACCTATCTTACATGGGGTACAGTTGCTGTTAATCCAGGATAACGTCTTGCTGTCTGAAACTTAAAATTCCAAAGAGATGAGAGACTTTTTGTGATGATTTTTAAACAAGAGGAAGACGAAAAAGAGAAGAAGAAGATGGAAGACGTGGAGAGTAGAATGTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCGCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAAATTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCTGGTTGCTGCATCAGTTTTTAGAAGCATCTGTAGCATAGGAAAAAAAATTAGGAAAGTTTAATTACCGTTTTTAACCCTCTAAAATTAATGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTAAACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGCGATATAAGAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAAGTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATCTGATGATTA</canonical>
            <polymorphic>TGGTGTTGTTGTCACTAGTACCAAAACGTTCGGACTAGTTTCACTTTCAGGCTTCACTAAGAAATTTAATGCAAAATCGAAAGGTGTCGGATCATCTTCTGAAATCATATAATATTTTTAACATCTTCCTTTGAAAATACCATCTTCAAAGACCCCACCGTCTGAGCGTGTGGACAAATGAAATTTGAACGCGAGAAGAGCAAGAAGAGATGCCAAGAAGAGATAGGCTAGTATTGGTATCCGTCTGGAAACCAGCATCTGGAAATCTTTTCGTGAATTTTGAAGAAGTAAACCTATCTTACATGGGGTACAGTTGCTGTTAATCCAGGATAACGTCTTGCTGTCTGAAACTTAAAATTCCAAAGAGATGAGAGACTTTTTGTGATGATTTTTAAACAAGAGGAAGACGAAAAAGAGAAGAAGAAGATGGAAGACGTGGAGAGTAGAATGTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCRCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAAATTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCTGGTTGCTGCATCAGTTTTTAGAAGCATCTGTAGCATAGGAAAAAAAATTAGGAAAGTTTAATTACCGTTTTTAACCCTCTAAAATTAATGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTAAACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGCGATATAAGAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAAGTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATCTGATGATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 293 191 14</canonical_bands>
                <polymorphic_bands>516 293 191</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGACGTGGAGAGTAGAATGTC</pcr_primer_p1>
		<pcr_primer_p2>AGGAATTATACGGTAAGCCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGACGTGGAGAGTAGAATGTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCGCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAAATTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCT</canonical_amplicon>
		<polymorphic_amplicon>AAGACGTGGAGAGTAGAATGTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCRCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAAATTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23235</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>157882</contig_pos>
        <strand>+</strand>
        <context>CTTGTTTTCC[A/G]CTATCCCGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCGCTTGTTTTCC</left_flank>
        <right_flank>CTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACTAGTACCAAAACGTTCGGACTAGTTTCACTTTCAGGCTTCACTAAGAAATTTAATGCAAAATCGAAAGGTGTCGGATCATCTTCTGAAATCATATAATATTTTTAACATCTTCCTTTGAAAATACCATCTTCAAAGACCCCACCGTCTGAGCGTGTGGACAAATGAAATTTGAACGCGAGAAGAGCAAGAAGAGATGCCAAGAAGAGATAGGCTAGTATTGGTATCCGTCTGGAAACCAGCATCTGGAAATCTTTTCGTGAATTTTGAAGAAGTAAACCTATCTTACATGGGGTACAGTTGCTGTTAATCCAGGATAACGTCTTGCTGTCTGAAACTTAAAATTCCAAAGAGATGAGAGACTTTTTGTGATGATTTTTAAACAAGAGGAAGACGAAAAAGAGAAGAAGAAGATGGAAGACGTGGAGAGTAGAATGTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCGCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAAATTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCTGGTTGCTGCATCAGTTTTTAGAAGCATCTGTAGCATAGGAAAAAAAATTAGGAAAGTTTAATTACCGTTTTTAACCCTCTAAAATTAATGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTAAACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGCGATATAAGAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAAGTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATCTGATGATTAGGTGGGCTTCT</canonical>
            <polymorphic>TCACTAGTACCAAAACGTTCGGACTAGTTTCACTTTCAGGCTTCACTAAGAAATTTAATGCAAAATCGAAAGGTGTCGGATCATCTTCTGAAATCATATAATATTTTTAACATCTTCCTTTGAAAATACCATCTTCAAAGACCCCACCGTCTGAGCGTGTGGACAAATGAAATTTGAACGCGAGAAGAGCAAGAAGAGATGCCAAGAAGAGATAGGCTAGTATTGGTATCCGTCTGGAAACCAGCATCTGGAAATCTTTTCGTGAATTTTGAAGAAGTAAACCTATCTTACATGGGGTACAGTTGCTGTTAATCCAGGATAACGTCTTGCTGTCTGAAACTTAAAATTCCAAAGAGATGAGAGACTTTTTGTGATGATTTTTAAACAAGAGGAAGACGAAAAAGAGAAGAAGAAGATGGAAGACGTGGAGAGTAGAATGTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCGCTTGTTTTCCRCTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAAATTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCTGGTTGCTGCATCAGTTTTTAGAAGCATCTGTAGCATAGGAAAAAAAATTAGGAAAGTTTAATTACCGTTTTTAACCCTCTAAAATTAATGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTAAACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGCGATATAAGAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAAGTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATCTGATGATTAGGTGGGCTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>221 109 103 80 71 62 54 51 48 41 30 29 21 20 20 13 13 7 3 2 2</canonical_bands>
                <polymorphic_bands>221 109 103 80 71 62 54 51 48 41 40 30 29 21 13 13 7 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGACGTGGAGAGTAGAATGTC</pcr_primer_p1>
		<pcr_primer_p2>AGGAATTATACGGTAAGCCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGACGTGGAGAGTAGAATGTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCGCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAAATTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCT</canonical_amplicon>
		<polymorphic_amplicon>AAGACGTGGAGAGTAGAATGTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCGCTTGTTTTCCRCTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAAATTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23236</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>157910</contig_pos>
        <strand>+</strand>
        <context>GTGATCTTGA[A/C]GAAGACTCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTGGGCCTCGCGCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGA</left_flank>
        <right_flank>GAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCACTTTCAGGCTTCACTAAGAAATTTAATGCAAAATCGAAAGGTGTCGGATCATCTTCTGAAATCATATAATATTTTTAACATCTTCCTTTGAAAATACCATCTTCAAAGACCCCACCGTCTGAGCGTGTGGACAAATGAAATTTGAACGCGAGAAGAGCAAGAAGAGATGCCAAGAAGAGATAGGCTAGTATTGGTATCCGTCTGGAAACCAGCATCTGGAAATCTTTTCGTGAATTTTGAAGAAGTAAACCTATCTTACATGGGGTACAGTTGCTGTTAATCCAGGATAACGTCTTGCTGTCTGAAACTTAAAATTCCAAAGAGATGAGAGACTTTTTGTGATGATTTTTAAACAAGAGGAAGACGAAAAAGAGAAGAAGAAGATGGAAGACGTGGAGAGTAGAATGTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCGCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAAATTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCTGGTTGCTGCATCAGTTTTTAGAAGCATCTGTAGCATAGGAAAAAAAATTAGGAAAGTTTAATTACCGTTTTTAACCCTCTAAAATTAATGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTAAACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGCGATATAAGAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAAGTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATCTGATGATTAGGTGGGCTTCTATTAAAGAAAATACGGTATTAAACTTCT</canonical>
            <polymorphic>TTCACTTTCAGGCTTCACTAAGAAATTTAATGCAAAATCGAAAGGTGTCGGATCATCTTCTGAAATCATATAATATTTTTAACATCTTCCTTTGAAAATACCATCTTCAAAGACCCCACCGTCTGAGCGTGTGGACAAATGAAATTTGAACGCGAGAAGAGCAAGAAGAGATGCCAAGAAGAGATAGGCTAGTATTGGTATCCGTCTGGAAACCAGCATCTGGAAATCTTTTCGTGAATTTTGAAGAAGTAAACCTATCTTACATGGGGTACAGTTGCTGTTAATCCAGGATAACGTCTTGCTGTCTGAAACTTAAAATTCCAAAGAGATGAGAGACTTTTTGTGATGATTTTTAAACAAGAGGAAGACGAAAAAGAGAAGAAGAAGATGGAAGACGTGGAGAGTAGAATGTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCGCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGAMGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAAATTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCTGGTTGCTGCATCAGTTTTTAGAAGCATCTGTAGCATAGGAAAAAAAATTAGGAAAGTTTAATTACCGTTTTTAACCCTCTAAAATTAATGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTAAACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGCGATATAAGAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAAGTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATCTGATGATTAGGTGGGCTTCTATTAAAGAAAATACGGTATTAAACTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGACGTGGAGAGTAGAATGTC</pcr_primer_p1>
		<pcr_primer_p2>AGGAATTATACGGTAAGCCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGACGTGGAGAGTAGAATGTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCGCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAAATTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCT</canonical_amplicon>
		<polymorphic_amplicon>AAGACGTGGAGAGTAGAATGTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCGCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGAMGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAAATTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23237</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>157968</contig_pos>
        <strand>+</strand>
        <context>ATTTTTCGAA[A/G]RTKATAGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAA</left_flank>
        <right_flank>ATTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGAAATCATATAATATTTTTAACATCTTCCTTTGAAAATACCATCTTCAAAGACCCCACCGTCTGAGCGTGTGGACAAATGAAATTTGAACGCGAGAAGAGCAAGAAGAGATGCCAAGAAGAGATAGGCTAGTATTGGTATCCGTCTGGAAACCAGCATCTGGAAATCTTTTCGTGAATTTTGAAGAAGTAAACCTATCTTACATGGGGTACAGTTGCTGTTAATCCAGGATAACGTCTTGCTGTCTGAAACTTAAAATTCCAAAGAGATGAGAGACTTTTTGTGATGATTTTTAAACAAGAGGAAGACGAAAAAGAGAAGAAGAAGATGGAAGACGTGGAGAGTAGAATGTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCGCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAAATTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCTGGTTGCTGCATCAGTTTTTAGAAGCATCTGTAGCATAGGAAAAAAAATTAGGAAAGTTTAATTACCGTTTTTAACCCTCTAAAATTAATGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTAAACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGCGATATAAGAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAAGTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATCTGATGATTAGGTGGGCTTCTATTAAAGAAAATACGGTATTAAACTTCTCTGAACAAAAAACTTCAGGACATTATAAAGAAAATTGTTTAAGTTCATAATTTTCCGA</canonical>
            <polymorphic>TCTGAAATCATATAATATTTTTAACATCTTCCTTTGAAAATACCATCTTCAAAGACCCCACCGTCTGAGCGTGTGGACAAATGAAATTTGAACGCGAGAAGAGCAAGAAGAGATGCCAAGAAGAGATAGGCTAGTATTGGTATCCGTCTGGAAACCAGCATCTGGAAATCTTTTCGTGAATTTTGAAGAAGTAAACCTATCTTACATGGGGTACAGTTGCTGTTAATCCAGGATAACGTCTTGCTGTCTGAAACTTAAAATTCCAAAGAGATGAGAGACTTTTTGTGATGATTTTTAAACAAGAGGAAGACGAAAAAGAGAAGAAGAAGATGGAAGACGTGGAGAGTAGAATGTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCGCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAARATTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCTGGTTGCTGCATCAGTTTTTAGAAGCATCTGTAGCATAGGAAAAAAAATTAGGAAAGTTTAATTACCGTTTTTAACCCTCTAAAATTAATGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTAAACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGCGATATAAGAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAAGTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATCTGATGATTAGGTGGGCTTCTATTAAAGAAAATACGGTATTAAACTTCTCTGAACAAAAAACTTCAGGACATTATAAAGAAAATTGTTTAAGTTCATAATTTTCCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>241 95 94 94 84 80 77 73 52 47 23 16 14 10</canonical_bands>
                <polymorphic_bands>318 95 94 94 84 80 73 52 47 23 16 14 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGACGTGGAGAGTAGAATGTC</pcr_primer_p1>
		<pcr_primer_p2>AGGAATTATACGGTAAGCCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGACGTGGAGAGTAGAATGTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCGCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAAATTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCT</canonical_amplicon>
		<polymorphic_amplicon>AAGACGTGGAGAGTAGAATGTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCGCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAARATTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23238</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>157969</contig_pos>
        <strand>+</strand>
        <context>TTTTTCGAAR[A/G]TKATAGTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAA</left_flank>
        <right_flank>TTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAAATCATATAATATTTTTAACATCTTCCTTTGAAAATACCATCTTCAAAGACCCCACCGTCTGAGCGTGTGGACAAATGAAATTTGAACGCGAGAAGAGCAAGAAGAGATGCCAAGAAGAGATAGGCTAGTATTGGTATCCGTCTGGAAACCAGCATCTGGAAATCTTTTCGTGAATTTTGAAGAAGTAAACCTATCTTACATGGGGTACAGTTGCTGTTAATCCAGGATAACGTCTTGCTGTCTGAAACTTAAAATTCCAAAGAGATGAGAGACTTTTTGTGATGATTTTTAAACAAGAGGAAGACGAAAAAGAGAAGAAGAAGATGGAAGACGTGGAGAGTAGAATGTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCGCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAAATTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCTGGTTGCTGCATCAGTTTTTAGAAGCATCTGTAGCATAGGAAAAAAAATTAGGAAAGTTTAATTACCGTTTTTAACCCTCTAAAATTAATGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTAAACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGCGATATAAGAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAAGTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATCTGATGATTAGGTGGGCTTCTATTAAAGAAAATACGGTATTAAACTTCTCTGAACAAAAAACTTCAGGACATTATAAAGAAAATTGTTTAAGTTCATAATTTTCCGAT</canonical>
            <polymorphic>CTGAAATCATATAATATTTTTAACATCTTCCTTTGAAAATACCATCTTCAAAGACCCCACCGTCTGAGCGTGTGGACAAATGAAATTTGAACGCGAGAAGAGCAAGAAGAGATGCCAAGAAGAGATAGGCTAGTATTGGTATCCGTCTGGAAACCAGCATCTGGAAATCTTTTCGTGAATTTTGAAGAAGTAAACCTATCTTACATGGGGTACAGTTGCTGTTAATCCAGGATAACGTCTTGCTGTCTGAAACTTAAAATTCCAAAGAGATGAGAGACTTTTTGTGATGATTTTTAAACAAGAGGAAGACGAAAAAGAGAAGAAGAAGATGGAAGACGTGGAGAGTAGAATGTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCGCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAARTTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCTGGTTGCTGCATCAGTTTTTAGAAGCATCTGTAGCATAGGAAAAAAAATTAGGAAAGTTTAATTACCGTTTTTAACCCTCTAAAATTAATGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTAAACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGCGATATAAGAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAAGTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATCTGATGATTAGGTGGGCTTCTATTAAAGAAAATACGGTATTAAACTTCTCTGAACAAAAAACTTCAGGACATTATAAAGAAAATTGTTTAAGTTCATAATTTTCCGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>241 95 94 94 83 80 77 73 52 47 23 16 14 11</canonical_bands>
                <polymorphic_bands>318 95 94 94 83 80 73 52 47 23 16 14 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGACGTGGAGAGTAGAATGTC</pcr_primer_p1>
		<pcr_primer_p2>AGGAATTATACGGTAAGCCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGACGTGGAGAGTAGAATGTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCGCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAAATTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCT</canonical_amplicon>
		<polymorphic_amplicon>AAGACGTGGAGAGTAGAATGTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCGCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAARTTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23239</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>157971</contig_pos>
        <strand>+</strand>
        <context>TTTCGAARRT[G/T]ATAGTTTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAAAT</left_flank>
        <right_flank>ATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAATCATATAATATTTTTAACATCTTCCTTTGAAAATACCATCTTCAAAGACCCCACCGTCTGAGCGTGTGGACAAATGAAATTTGAACGCGAGAAGAGCAAGAAGAGATGCCAAGAAGAGATAGGCTAGTATTGGTATCCGTCTGGAAACCAGCATCTGGAAATCTTTTCGTGAATTTTGAAGAAGTAAACCTATCTTACATGGGGTACAGTTGCTGTTAATCCAGGATAACGTCTTGCTGTCTGAAACTTAAAATTCCAAAGAGATGAGAGACTTTTTGTGATGATTTTTAAACAAGAGGAAGACGAAAAAGAGAAGAAGAAGATGGAAGACGTGGAGAGTAGAATGTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCGCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAAATTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCTGGTTGCTGCATCAGTTTTTAGAAGCATCTGTAGCATAGGAAAAAAAATTAGGAAAGTTTAATTACCGTTTTTAACCCTCTAAAATTAATGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTAAACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGCGATATAAGAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAAGTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATCTGATGATTAGGTGGGCTTCTATTAAAGAAAATACGGTATTAAACTTCTCTGAACAAAAAACTTCAGGACATTATAAAGAAAATTGTTTAAGTTCATAATTTTCCGATAT</canonical>
            <polymorphic>GAAATCATATAATATTTTTAACATCTTCCTTTGAAAATACCATCTTCAAAGACCCCACCGTCTGAGCGTGTGGACAAATGAAATTTGAACGCGAGAAGAGCAAGAAGAGATGCCAAGAAGAGATAGGCTAGTATTGGTATCCGTCTGGAAACCAGCATCTGGAAATCTTTTCGTGAATTTTGAAGAAGTAAACCTATCTTACATGGGGTACAGTTGCTGTTAATCCAGGATAACGTCTTGCTGTCTGAAACTTAAAATTCCAAAGAGATGAGAGACTTTTTGTGATGATTTTTAAACAAGAGGAAGACGAAAAAGAGAAGAAGAAGATGGAAGACGTGGAGAGTAGAATGTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCGCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAAATKATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCTGGTTGCTGCATCAGTTTTTAGAAGCATCTGTAGCATAGGAAAAAAAATTAGGAAAGTTTAATTACCGTTTTTAACCCTCTAAAATTAATGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTAAACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGCGATATAAGAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAAGTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATCTGATGATTAGGTGGGCTTCTATTAAAGAAAATACGGTATTAAACTTCTCTGAACAAAAAACTTCAGGACATTATAAAGAAAATTGTTTAAGTTCATAATTTTCCGATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>241 95 94 94 81 80 77 73 52 47 23 16 14 13</canonical_bands>
                <polymorphic_bands>318 95 94 94 81 80 73 52 47 23 16 14 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGACGTGGAGAGTAGAATGTC</pcr_primer_p1>
		<pcr_primer_p2>AGGAATTATACGGTAAGCCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGACGTGGAGAGTAGAATGTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCGCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAAATTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCT</canonical_amplicon>
		<polymorphic_amplicon>AAGACGTGGAGAGTAGAATGTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCGCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAAATKATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23241</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>161048</contig_pos>
        <strand></strand>
        <context>taatagacgg[C/T]cacccaaacc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGG</left_flank>
        <right_flank>CACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCATAAAACAGGAAATAAAATTGTGCGGACCTTTGAGTTTACGTTTTTCCCCTTCTACTTTTGTTCGGTTTTCACCTACCTCCACTCCGGTTTTCTTTGAGTTACCACTGCTTTTTTTGTTCCTATTCTCGACGTTATCAATTATATATAAAGGTTTTCTTTTTCAACTTCCTTCTGGCTCAGTTTCAGAAGATCAGTCTCGGAGTCAGTATTACTCTAGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAATAATTTTGGAGTAATTTGGGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGTTCTATTAGAGTGTTTATGGTATGTTTTGCAATCAGTCTCTGGCCATTTTTTTTTTCGATTTTCCGATGAGCCCCTTAAATGTTTTACTTTTTTCATATAAATCGGAAAAATGACATGGAAAGCAAAACTTTTTTTTCGATTTTTCAACAATTTTCATCGGTTTTGTACATTTTTTTCATACAAAAATTCGGAAAACCGCAAAAAGACCGATGAAAACCTTCGAAAAACAGATAAAATTCGTCGAAAACTCAAAAAATAGGCCAGAAAATAATTACGAGGGCACATGTTCCTTTAAATGCACTTTTAAGGATTTTGACGCCGGA</canonical>
            <polymorphic>CATCATAAAACAGGAAATAAAATTGTGCGGACCTTTGAGTTTACGTTTTTCCCCTTCTACTTTTGTTCGGTTTTCACCTACCTCCACTCCGGTTTTCTTTGAGTTACCACTGCTTTTTTTGTTCCTATTCTCGACGTTATCAATTATATATAAAGGTTTTCTTTTTCAACTTCCTTCTGGCTCAGTTTCAGAAGATCAGTCTCGGAGTCAGTATTACTCTAGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAATAATTTTGGAGTAATTTGGGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGYCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGTTCTATTAGAGTGTTTATGGTATGTTTTGCAATCAGTCTCTGGCCATTTTTTTTTTCGATTTTCCGATGAGCCCCTTAAATGTTTTACTTTTTTCATATAAATCGGAAAAATGACATGGAAAGCAAAACTTTTTTTTCGATTTTTCAACAATTTTCATCGGTTTTGTACATTTTTTTCATACAAAAATTCGGAAAACCGCAAAAAGACCGATGAAAACCTTCGAAAAACAGATAAAATTCGTCGAAAACTCAAAAAATAGGCCAGAAAATAATTACGAGGGCACATGTTCCTTTAAATGCACTTTTAAGGATTTTGACGCCGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>499 220 218 63</canonical_bands>
                <polymorphic_bands>719 218 63</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>497 283 220</canonical_bands>
                <polymorphic_bands>717 283</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>276 197 190 180 63 43 28 23</canonical_bands>
                <polymorphic_bands>299 197 190 180 63 43 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGTACAATCCGAATTATGTG</pcr_primer_p1>
		<pcr_primer_p2>CAGAGACTGATTGCAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>GTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGTTCTATTAGAGTGTTTATGGTATGTTTTGCAATCAGTCTCTG</canonical_amplicon>
		<polymorphic_amplicon>GTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGYCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGTTCTATTAGAGTGTTTATGGTATGTTTTGCAATCAGTCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23242</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>161035</contig_pos>
        <strand></strand>
        <context>accgtaatca[T/C]tctaatagac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCA</left_flank>
        <right_flank>TCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGTGGATGTGTCATCATAAAACAGGAAATAAAATTGTGCGGACCTTTGAGTTTACGTTTTTCCCCTTCTACTTTTGTTCGGTTTTCACCTACCTCCACTCCGGTTTTCTTTGAGTTACCACTGCTTTTTTTGTTCCTATTCTCGACGTTATCAATTATATATAAAGGTTTTCTTTTTCAACTTCCTTCTGGCTCAGTTTCAGAAGATCAGTCTCGGAGTCAGTATTACTCTAGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAATAATTTTGGAGTAATTTGGGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGTTCTATTAGAGTGTTTATGGTATGTTTTGCAATCAGTCTCTGGCCATTTTTTTTTTCGATTTTCCGATGAGCCCCTTAAATGTTTTACTTTTTTCATATAAATCGGAAAAATGACATGGAAAGCAAAACTTTTTTTTCGATTTTTCAACAATTTTCATCGGTTTTGTACATTTTTTTCATACAAAAATTCGGAAAACCGCAAAAAGACCGATGAAAACCTTCGAAAAACAGATAAAATTCGTCGAAAACTCAAAAAATAGGCCAGAAAATAATTACGAGGGCACATGTTCCTTTAAATGCACTTTTAAGGA</canonical>
            <polymorphic>ATAGTGGATGTGTCATCATAAAACAGGAAATAAAATTGTGCGGACCTTTGAGTTTACGTTTTTCCCCTTCTACTTTTGTTCGGTTTTCACCTACCTCCACTCCGGTTTTCTTTGAGTTACCACTGCTTTTTTTGTTCCTATTCTCGACGTTATCAATTATATATAAAGGTTTTCTTTTTCAACTTCCTTCTGGCTCAGTTTCAGAAGATCAGTCTCGGAGTCAGTATTACTCTAGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAATAATTTTGGAGTAATTTGGGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCAYTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGTTCTATTAGAGTGTTTATGGTATGTTTTGCAATCAGTCTCTGGCCATTTTTTTTTTCGATTTTCCGATGAGCCCCTTAAATGTTTTACTTTTTTCATATAAATCGGAAAAATGACATGGAAAGCAAAACTTTTTTTTCGATTTTTCAACAATTTTCATCGGTTTTGTACATTTTTTTCATACAAAAATTCGGAAAACCGCAAAAAGACCGATGAAAACCTTCGAAAAACAGATAAAATTCGTCGAAAACTCAAAAAATAGGCCAGAAAATAATTACGAGGGCACATGTTCCTTTAAATGCACTTTTAAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGTACAATCCGAATTATGTG</pcr_primer_p1>
		<pcr_primer_p2>CAGAGACTGATTGCAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>GTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGTTCTATTAGAGTGTTTATGGTATGTTTTGCAATCAGTCTCTG</canonical_amplicon>
		<polymorphic_amplicon>GTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCAYTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGTTCTATTAGAGTGTTTATGGTATGTTTTGCAATCAGTCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23243</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>160999</contig_pos>
        <strand>+</strand>
        <context>CCCYGAAAAT[C/T]CGATGAAATC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGACTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAAT</left_flank>
        <right_flank>CGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAAAGTGGGTCACACAAAAAAAGATAGAAAGAAGATAGTGGATGTGTCATCATAAAACAGGAAATAAAATTGTGCGGACCTTTGAGTTTACGTTTTTCCCCTTCTACTTTTGTTCGGTTTTCACCTACCTCCACTCCGGTTTTCTTTGAGTTACCACTGCTTTTTTTGTTCCTATTCTCGACGTTATCAATTATATATAAAGGTTTTCTTTTTCAACTTCCTTCTGGCTCAGTTTCAGAAGATCAGTCTCGGAGTCAGTATTACTCTAGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAATAATTTTGGAGTAATTTGGGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGTTCTATTAGAGTGTTTATGGTATGTTTTGCAATCAGTCTCTGGCCATTTTTTTTTTCGATTTTCCGATGAGCCCCTTAAATGTTTTACTTTTTTCATATAAATCGGAAAAATGACATGGAAAGCAAAACTTTTTTTTCGATTTTTCAACAATTTTCATCGGTTTTGTACATTTTTTTCATACAAAAATTCGGAAAACCGCAAAAAGACCGATGAAAACCTTCGAAAAACAGATAAAATTCGTCGAAAACTCAAAAAATAGGCCAGAAAATAATTA</canonical>
            <polymorphic>AAGAAAGTGGGTCACACAAAAAAAGATAGAAAGAAGATAGTGGATGTGTCATCATAAAACAGGAAATAAAATTGTGCGGACCTTTGAGTTTACGTTTTTCCCCTTCTACTTTTGTTCGGTTTTCACCTACCTCCACTCCGGTTTTCTTTGAGTTACCACTGCTTTTTTTGTTCCTATTCTCGACGTTATCAATTATATATAAAGGTTTTCTTTTTCAACTTCCTTCTGGCTCAGTTTCAGAAGATCAGTCTCGGAGTCAGTATTACTCTAGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAATAATTTTGGAGTAATTTGGGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAATYCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGTTCTATTAGAGTGTTTATGGTATGTTTTGCAATCAGTCTCTGGCCATTTTTTTTTTCGATTTTCCGATGAGCCCCTTAAATGTTTTACTTTTTTCATATAAATCGGAAAAATGACATGGAAAGCAAAACTTTTTTTTCGATTTTTCAACAATTTTCATCGGTTTTGTACATTTTTTTCATACAAAAATTCGGAAAACCGCAAAAAGACCGATGAAAACCTTCGAAAAACAGATAAAATTCGTCGAAAACTCAAAAAATAGGCCAGAAAATAATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>414 303 97 96 50 40</canonical_bands>
                <polymorphic_bands>510 303 97 50 40</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>281 218 181 102 84 81 32 21</canonical_bands>
                <polymorphic_bands>383 218 181 84 81 32 21</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>378 121 84 80 69 50 38 36 35 31 29 17 16 11 5</canonical_bands>
                <polymorphic_bands>394 121 84 80 69 50 38 36 35 31 29 17 11 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTACTGAGCAAATCAGAGGT</pcr_primer_p1>
		<pcr_primer_p2>CAGAGACTGATTGCAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>430</pcr_amplicon_size>
		<canonical_amplicon>GGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGTTCTATTAGAGTGTTTATGGTATGTTTTGCAATCAGTCTCTG</canonical_amplicon>
		<polymorphic_amplicon>GGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAATYCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGTTCTATTAGAGTGTTTATGGTATGTTTTGCAATCAGTCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23244</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>160992</contig_pos>
        <strand>+</strand>
        <context>TTATGTGCCC[C/T]GAAAATYCGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCC</left_flank>
        <right_flank>GAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGTTAAAGAAAGTGGGTCACACAAAAAAAGATAGAAAGAAGATAGTGGATGTGTCATCATAAAACAGGAAATAAAATTGTGCGGACCTTTGAGTTTACGTTTTTCCCCTTCTACTTTTGTTCGGTTTTCACCTACCTCCACTCCGGTTTTCTTTGAGTTACCACTGCTTTTTTTGTTCCTATTCTCGACGTTATCAATTATATATAAAGGTTTTCTTTTTCAACTTCCTTCTGGCTCAGTTTCAGAAGATCAGTCTCGGAGTCAGTATTACTCTAGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAATAATTTTGGAGTAATTTGGGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGTTCTATTAGAGTGTTTATGGTATGTTTTGCAATCAGTCTCTGGCCATTTTTTTTTTCGATTTTCCGATGAGCCCCTTAAATGTTTTACTTTTTTCATATAAATCGGAAAAATGACATGGAAAGCAAAACTTTTTTTTCGATTTTTCAACAATTTTCATCGGTTTTGTACATTTTTTTCATACAAAAATTCGGAAAACCGCAAAAAGACCGATGAAAACCTTCGAAAAACAGATAAAATTCGTCGAAAACTCAAAAAATAGGCCAGAAA</canonical>
            <polymorphic>TTGGTTAAAGAAAGTGGGTCACACAAAAAAAGATAGAAAGAAGATAGTGGATGTGTCATCATAAAACAGGAAATAAAATTGTGCGGACCTTTGAGTTTACGTTTTTCCCCTTCTACTTTTGTTCGGTTTTCACCTACCTCCACTCCGGTTTTCTTTGAGTTACCACTGCTTTTTTTGTTCCTATTCTCGACGTTATCAATTATATATAAAGGTTTTCTTTTTCAACTTCCTTCTGGCTCAGTTTCAGAAGATCAGTCTCGGAGTCAGTATTACTCTAGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAATAATTTTGGAGTAATTTGGGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCCYGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGTTCTATTAGAGTGTTTATGGTATGTTTTGCAATCAGTCTCTGGCCATTTTTTTTTTCGATTTTCCGATGAGCCCCTTAAATGTTTTACTTTTTTCATATAAATCGGAAAAATGACATGGAAAGCAAAACTTTTTTTTCGATTTTTCAACAATTTTCATCGGTTTTGTACATTTTTTTCATACAAAAATTCGGAAAACCGCAAAAAGACCGATGAAAACCTTCGAAAAACAGATAAAATTCGTCGAAAACTCAAAAAATAGGCCAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTACTGAGCAAATCAGAGGT</pcr_primer_p1>
		<pcr_primer_p2>CAGAGACTGATTGCAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>430</pcr_amplicon_size>
		<canonical_amplicon>GGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGTTCTATTAGAGTGTTTATGGTATGTTTTGCAATCAGTCTCTG</canonical_amplicon>
		<polymorphic_amplicon>GGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCCYGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGTTCTATTAGAGTGTTTATGGTATGTTTTGCAATCAGTCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23249</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>173567</contig_pos>
        <strand>+</strand>
        <context>TGAAATCAGG[A/C]CTCTTCTTAC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAGACATCTGCAATTTTAAATTTTGAATTTTTGATAATTTTGAAATCAGG</left_flank>
        <right_flank>CTCTTCTTACCAAGTTGGGATCAACAATAGCTCCGGTAGCCATCGCCGCC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGGGCTTCCTAAAAGAGCCAATTTATTGCGGTTCCTGTTAAAGATATAAAAAATTAGTCAACTGATGAATTGTCTATCATATTATCAGCTCAGTTGACACATTTTTGATATCTCTTACAGTAACCGACATACATGGACTCAAGGATTACGGTTCGCGAAATTCTAGAATTCGAGAGTGAACTCCTGAACGAGCCAATTTATCTCGGCTCCTGCCGAAGATATTAAAAAGTTGCCAACTGATAAAATGTTTATCATAATACCACAACCATTTTATCAGTTGACATATTTTTGATATCTTGCATAGACGCCAAGATAAATTAGGTCAAACTTGACAGTGTGGGGGCCCTTCTATTATACGGTATCTGACGACTTACATTGGGTCGAGAAACGCCAGATTCTTGTAATCATGAGTAAGAGCTTTACTGGATGCAAATTCGGCTTCATAACTAGACATCTGCAATTTTAAATTTTGAATTTTTGATAATTTTGAAATCAGGCCTCTTCTTACCAAGTTGGGATCAACAATAGCTCCGGTAGCCATCGCCGCCATCAAATGCTCGTAAGCCGGAATGACTTTTCTGGATTTCAGCAAAAAATCTGCTTGTAATATATGATATTTGTGGGTCTTTGTAGGCGGCATCAACTGTCTCGAAGCCGTCAGTCTCTCGAAAACTTCTTTGCACCGAGCATCATCCTTAAGCCTACTATATTCCGTAATCAGATAACAGTAGGCCGAGAGCACATGCGGATGCTCGTTTATCACTTCTTGCAGCAAATAATACATCTCCTGTGAAGCCTTAAGGATTGTAAAAACTGCCAAATGTCTTTGATTACCTTTGGGTGACTTGCTTCTGGATTCCGATTGATTCCATTAACCAAAACATGAACTTTCAGAAGTTTTGCATTCACATTGGTTCGATTTGCATGAAGGAATTTTGTAGCAAAGATTTTCGCCTCTCGGTGGCCACTGCAAAATTGAAAATCGGGGTAAATTTAAT</canonical>
            <polymorphic>GAAGGGCTTCCTAAAAGAGCCAATTTATTGCGGTTCCTGTTAAAGATATAAAAAATTAGTCAACTGATGAATTGTCTATCATATTATCAGCTCAGTTGACACATTTTTGATATCTCTTACAGTAACCGACATACATGGACTCAAGGATTACGGTTCGCGAAATTCTAGAATTCGAGAGTGAACTCCTGAACGAGCCAATTTATCTCGGCTCCTGCCGAAGATATTAAAAAGTTGCCAACTGATAAAATGTTTATCATAATACCACAACCATTTTATCAGTTGACATATTTTTGATATCTTGCATAGACGCCAAGATAAATTAGGTCAAACTTGACAGTGTGGGGGCCCTTCTATTATACGGTATCTGACGACTTACATTGGGTCGAGAAACGCCAGATTCTTGTAATCATGAGTAAGAGCTTTACTGGATGCAAATTCGGCTTCATAACTAGACATCTGCAATTTTAAATTTTGAATTTTTGATAATTTTGAAATCAGGMCTCTTCTTACCAAGTTGGGATCAACAATAGCTCCGGTAGCCATCGCCGCCATCAAATGCTCGTAAGCCGGAATGACTTTTCTGGATTTCAGCAAAAAATCTGCTTGTAATATATGATATTTGTGGGTCTTTGTAGGCGGCATCAACTGTCTCGAAGCCGTCAGTCTCTCGAAAACTTCTTTGCACCGAGCATCATCCTTAAGCCTACTATATTCCGTAATCAGATAACAGTAGGCCGAGAGCACATGCGGATGCTCGTTTATCACTTCTTGCAGCAAATAATACATCTCCTGTGAAGCCTTAAGGATTGTAAAAACTGCCAAATGTCTTTGATTACCTTTGGGTGACTTGCTTCTGGATTCCGATTGATTCCATTAACCAAAACATGAACTTTCAGAAGTTTTGCATTCACATTGGTTCGATTTGCATGAAGGAATTTTGTAGCAAAGATTTTCGCCTCTCGGTGGCCACTGCAAAATTGAAAATCGGGGTAAATTTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGGCCT</site>
                <isoschizomers>
                    <enzyme>AatI</enzyme>
                    <enzyme>Eco147I</enzyme>
                    <enzyme>PceI</enzyme>
                    <enzyme>SseBI</enzyme>
                    <enzyme>StuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>345 235 232 154 34</canonical_bands>
                <polymorphic_bands>389 345 232 34</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>169 137 104 90 74 71 63 59 46 34 32 31 27 21 14 13 9 6</canonical_bands>
                <polymorphic_bands>169 137 104 90 90 74 71 63 46 34 32 27 21 14 13 9 6</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>499 467 34</canonical_bands>
                <polymorphic_bands>966 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTCGGCTTCATAACTAGACA</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAGTTTTCGAGAGACTGAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATTCGGCTTCATAACTAGACATCTGCAATTTTAAATTTTGAATTTTTGATAATTTTGAAATCAGGCCTCTTCTTACCAAGTTGGGATCAACAATAGCTCCGGTAGCCATCGCCGCCATCAAATGCTCGTAAGCCGGAATGACTTTTCTGGATTTCAGCAAAAAATCTGCTTGTAATATATGATATTTGTGGGTCTTTGTAGGCGGCATCAACTGTCTCGAAGCCGTCAGTCTCTCGAAAACTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>AATTCGGCTTCATAACTAGACATCTGCAATTTTAAATTTTGAATTTTTGATAATTTTGAAATCAGGMCTCTTCTTACCAAGTTGGGATCAACAATAGCTCCGGTAGCCATCGCCGCCATCAAATGCTCGTAAGCCGGAATGACTTTTCTGGATTTCAGCAAAAAATCTGCTTGTAATATATGATATTTGTGGGTCTTTGTAGGCGGCATCAACTGTCTCGAAGCCGTCAGTCTCTCGAAAACTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23250</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>173645</contig_pos>
        <strand>+</strand>
        <context>CGGAATGACT[A/T]TTCTGGATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGCTCCGGTAGCCATCGCCGCCATCAAATGCTCGTAAGCCGGAATGACT</left_flank>
        <right_flank>TTCTGGATTTCAGCAAAAAATCTGCTTGTAATATATGATATTTGTGGGTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATATTATCAGCTCAGTTGACACATTTTTGATATCTCTTACAGTAACCGACATACATGGACTCAAGGATTACGGTTCGCGAAATTCTAGAATTCGAGAGTGAACTCCTGAACGAGCCAATTTATCTCGGCTCCTGCCGAAGATATTAAAAAGTTGCCAACTGATAAAATGTTTATCATAATACCACAACCATTTTATCAGTTGACATATTTTTGATATCTTGCATAGACGCCAAGATAAATTAGGTCAAACTTGACAGTGTGGGGGCCCTTCTATTATACGGTATCTGACGACTTACATTGGGTCGAGAAACGCCAGATTCTTGTAATCATGAGTAAGAGCTTTACTGGATGCAAATTCGGCTTCATAACTAGACATCTGCAATTTTAAATTTTGAATTTTTGATAATTTTGAAATCAGGCCTCTTCTTACCAAGTTGGGATCAACAATAGCTCCGGTAGCCATCGCCGCCATCAAATGCTCGTAAGCCGGAATGACTTTTCTGGATTTCAGCAAAAAATCTGCTTGTAATATATGATATTTGTGGGTCTTTGTAGGCGGCATCAACTGTCTCGAAGCCGTCAGTCTCTCGAAAACTTCTTTGCACCGAGCATCATCCTTAAGCCTACTATATTCCGTAATCAGATAACAGTAGGCCGAGAGCACATGCGGATGCTCGTTTATCACTTCTTGCAGCAAATAATACATCTCCTGTGAAGCCTTAAGGATTGTAAAAACTGCCAAATGTCTTTGATTACCTTTGGGTGACTTGCTTCTGGATTCCGATTGATTCCATTAACCAAAACATGAACTTTCAGAAGTTTTGCATTCACATTGGTTCGATTTGCATGAAGGAATTTTGTAGCAAAGATTTTCGCCTCTCGGTGGCCACTGCAAAATTGAAAATCGGGGTAAATTTAATCTCAATTATCTCGGTTTCCGTTAAAGATATGAAAAATTTGTCCACTAATAAAATATAGGCGATTTCATGATTATCATT</canonical>
            <polymorphic>TCATATTATCAGCTCAGTTGACACATTTTTGATATCTCTTACAGTAACCGACATACATGGACTCAAGGATTACGGTTCGCGAAATTCTAGAATTCGAGAGTGAACTCCTGAACGAGCCAATTTATCTCGGCTCCTGCCGAAGATATTAAAAAGTTGCCAACTGATAAAATGTTTATCATAATACCACAACCATTTTATCAGTTGACATATTTTTGATATCTTGCATAGACGCCAAGATAAATTAGGTCAAACTTGACAGTGTGGGGGCCCTTCTATTATACGGTATCTGACGACTTACATTGGGTCGAGAAACGCCAGATTCTTGTAATCATGAGTAAGAGCTTTACTGGATGCAAATTCGGCTTCATAACTAGACATCTGCAATTTTAAATTTTGAATTTTTGATAATTTTGAAATCAGGCCTCTTCTTACCAAGTTGGGATCAACAATAGCTCCGGTAGCCATCGCCGCCATCAAATGCTCGTAAGCCGGAATGACTWTTCTGGATTTCAGCAAAAAATCTGCTTGTAATATATGATATTTGTGGGTCTTTGTAGGCGGCATCAACTGTCTCGAAGCCGTCAGTCTCTCGAAAACTTCTTTGCACCGAGCATCATCCTTAAGCCTACTATATTCCGTAATCAGATAACAGTAGGCCGAGAGCACATGCGGATGCTCGTTTATCACTTCTTGCAGCAAATAATACATCTCCTGTGAAGCCTTAAGGATTGTAAAAACTGCCAAATGTCTTTGATTACCTTTGGGTGACTTGCTTCTGGATTCCGATTGATTCCATTAACCAAAACATGAACTTTCAGAAGTTTTGCATTCACATTGGTTCGATTTGCATGAAGGAATTTTGTAGCAAAGATTTTCGCCTCTCGGTGGCCACTGCAAAATTGAAAATCGGGGTAAATTTAATCTCAATTATCTCGGTTTCCGTTAAAGATATGAAAAATTTGTCCACTAATAAAATATAGGCGATTTCATGATTATCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCGGCTTCATAACTAGACA</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAGTTTTCGAGAGACTGAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATTCGGCTTCATAACTAGACATCTGCAATTTTAAATTTTGAATTTTTGATAATTTTGAAATCAGGCCTCTTCTTACCAAGTTGGGATCAACAATAGCTCCGGTAGCCATCGCCGCCATCAAATGCTCGTAAGCCGGAATGACTTTTCTGGATTTCAGCAAAAAATCTGCTTGTAATATATGATATTTGTGGGTCTTTGTAGGCGGCATCAACTGTCTCGAAGCCGTCAGTCTCTCGAAAACTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>AATTCGGCTTCATAACTAGACATCTGCAATTTTAAATTTTGAATTTTTGATAATTTTGAAATCAGGCCTCTTCTTACCAAGTTGGGATCAACAATAGCTCCGGTAGCCATCGCCGCCATCAAATGCTCGTAAGCCGGAATGACTWTTCTGGATTTCAGCAAAAAATCTGCTTGTAATATATGATATTTGTGGGTCTTTGTAGGCGGCATCAACTGTCTCGAAGCCGTCAGTCTCTCGAAAACTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23251</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>175861</contig_pos>
        <strand>+</strand>
        <context>CTAAAATGTT[C/T]AAGAATTATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATACTCATATCGAATGATGCTATGAAGGTTTTCAGGATCTAAAATGTT</left_flank>
        <right_flank>AAGAATTATTCAATTTTAGATAAATTTGGAGAAACTCACAGCTCCAGCCT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACAAAAAAAAAAAGAATTTTCAAATAATTCTGTGAATGCAAATTTTTCAATCTATGTGTGTTTCAAACCCTCCAAAATGTTCAAAGAAATCGGACTTGTGAAAACGGTGAAAATAACCGAAAATCATATACATACTCATCTGGTAGCTCACTGGACCATGGCTCTGGCGGCACACAATCTCCCACTTCTTCCTTTTTCAGTTGACGAAGAAGACGTGGCATCTCTTGATTCTTTTTTTCTAGATACGGACCACAGATTTTGTTCAAGGCGGCTGAAATTTTTGAAATGATTTCATGAGAAAAAACCTTTGTATGCTTACCATAGGCTTCTGAAAATTTGTTGGTTTTTTGAAGGACGCAAGCGTAGCTGAACCAGACATTATCCTGATGTTCCAGTTGATTATATTCCTCGAAACTTTCGGGTTCCCGAAGTTCACCGGGTGTGAATGCAATACTCATATCGAATGATGCTATGAAGGTTTTCAGGATCTAAAATGTTTAAGAATTATTCAATTTTAGATAAATTTGGAGAAACTCACAGCTCCAGCCTGCGCATATCGTTTCGTTTTATCGTAAAACTCGCAAATACATTTGTAGATATTACCGTCAGCTTCAGTGCGAGCCAAAGCTAAACGACTTCCGTTCTGTCCTTGATTTGTTATCTCATACAAGAGGATGGTGTCTTCTGCATAACCGTGCTCGCAAAGAATTCGAAGATGTTCCCATATGGGGACTGGTCGTTTCAACATCGCCATTGGTTTTGTTGCAGAACATCGCGATTTGCGGGAAGACGTTTGAGGAGCAGATGCACGTGGCATAGCCTGAAAATTGACTAGAATTTTTAAATTAGAATTTCATATAGTGTAAGATTGACACAATGTTTAAAGCTTCAAAAAAATGATAACAACTGGCACAGAAAAACCACGGATGTATCCATGATTCTGAATGCGTTCACACAGCAACCGATCCAGTTAGAAACGCGGTCTCTCACTCTCTAACA</canonical>
            <polymorphic>GACAAAAAAAAAAAGAATTTTCAAATAATTCTGTGAATGCAAATTTTTCAATCTATGTGTGTTTCAAACCCTCCAAAATGTTCAAAGAAATCGGACTTGTGAAAACGGTGAAAATAACCGAAAATCATATACATACTCATCTGGTAGCTCACTGGACCATGGCTCTGGCGGCACACAATCTCCCACTTCTTCCTTTTTCAGTTGACGAAGAAGACGTGGCATCTCTTGATTCTTTTTTTCTAGATACGGACCACAGATTTTGTTCAAGGCGGCTGAAATTTTTGAAATGATTTCATGAGAAAAAACCTTTGTATGCTTACCATAGGCTTCTGAAAATTTGTTGGTTTTTTGAAGGACGCAAGCGTAGCTGAACCAGACATTATCCTGATGTTCCAGTTGATTATATTCCTCGAAACTTTCGGGTTCCCGAAGTTCACCGGGTGTGAATGCAATACTCATATCGAATGATGCTATGAAGGTTTTCAGGATCTAAAATGTTYAAGAATTATTCAATTTTAGATAAATTTGGAGAAACTCACAGCTCCAGCCTGCGCATATCGTTTCGTTTTATCGTAAAACTCGCAAATACATTTGTAGATATTACCGTCAGCTTCAGTGCGAGCCAAAGCTAAACGACTTCCGTTCTGTCCTTGATTTGTTATCTCATACAAGAGGATGGTGTCTTCTGCATAACCGTGCTCGCAAAGAATTCGAAGATGTTCCCATATGGGGACTGGTCGTTTCAACATCGCCATTGGTTTTGTTGCAGAACATCGCGATTTGCGGGAAGACGTTTGAGGAGCAGATGCACGTGGCATAGCCTGAAAATTGACTAGAATTTTTAAATTAGAATTTCATATAGTGTAAGATTGACACAATGTTTAAAGCTTCAAAAAAATGATAACAACTGGCACAGAAAAACCACGGATGTATCCATGATTCTGAATGCGTTCACACAGCAACCGATCCAGTTAGAAACGCGGTCTCTCACTCTCTAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>499 343 118 40</canonical_bands>
                <polymorphic_bands>842 118 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGCTGAACCAGACATTATCC</pcr_primer_p1>
		<pcr_primer_p2>AAGCTGACGGTAATATCTACAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAGCTGAACCAGACATTATCCTGATGTTCCAGTTGATTATATTCCTCGAAACTTTCGGGTTCCCGAAGTTCACCGGGTGTGAATGCAATACTCATATCGAATGATGCTATGAAGGTTTTCAGGATCTAAAATGTTTAAGAATTATTCAATTTTAGATAAATTTGGAGAAACTCACAGCTCCAGCCTGCGCATATCGTTTCGTTTTATCGTAAAACTCGCAAATACATTTGTAGATATTACCGTCAGCTT</canonical_amplicon>
		<polymorphic_amplicon>GTAGCTGAACCAGACATTATCCTGATGTTCCAGTTGATTATATTCCTCGAAACTTTCGGGTTCCCGAAGTTCACCGGGTGTGAATGCAATACTCATATCGAATGATGCTATGAAGGTTTTCAGGATCTAAAATGTTYAAGAATTATTCAATTTTAGATAAATTTGGAGAAACTCACAGCTCCAGCCTGCGCATATCGTTTCGTTTTATCGTAAAACTCGCAAATACATTTGTAGATATTACCGTCAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23252</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>175800</contig_pos>
        <strand>+</strand>
        <context>GAAGTTCACC[A/G]GGTGTGAATG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTCCAGTTGATTATATTCCTCGAAACTTTCGGGTTCCCGAAGTTCACC</left_flank>
        <right_flank>GGTGTGAATGCAATACTCATATCGAATGATGCTATGAAGGTTTTCAGGAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGAATTGAGTTGGGAATTTTGTACTGAAGCAGTCGAAAAACAGGTGTCTTTCGGAAATTGACAAAAAAAAAAAGAATTTTCAAATAATTCTGTGAATGCAAATTTTTCAATCTATGTGTGTTTCAAACCCTCCAAAATGTTCAAAGAAATCGGACTTGTGAAAACGGTGAAAATAACCGAAAATCATATACATACTCATCTGGTAGCTCACTGGACCATGGCTCTGGCGGCACACAATCTCCCACTTCTTCCTTTTTCAGTTGACGAAGAAGACGTGGCATCTCTTGATTCTTTTTTTCTAGATACGGACCACAGATTTTGTTCAAGGCGGCTGAAATTTTTGAAATGATTTCATGAGAAAAAACCTTTGTATGCTTACCATAGGCTTCTGAAAATTTGTTGGTTTTTTGAAGGACGCAAGCGTAGCTGAACCAGACATTATCCTGATGTTCCAGTTGATTATATTCCTCGAAACTTTCGGGTTCCCGAAGTTCACCGGGTGTGAATGCAATACTCATATCGAATGATGCTATGAAGGTTTTCAGGATCTAAAATGTTTAAGAATTATTCAATTTTAGATAAATTTGGAGAAACTCACAGCTCCAGCCTGCGCATATCGTTTCGTTTTATCGTAAAACTCGCAAATACATTTGTAGATATTACCGTCAGCTTCAGTGCGAGCCAAAGCTAAACGACTTCCGTTCTGTCCTTGATTTGTTATCTCATACAAGAGGATGGTGTCTTCTGCATAACCGTGCTCGCAAAGAATTCGAAGATGTTCCCATATGGGGACTGGTCGTTTCAACATCGCCATTGGTTTTGTTGCAGAACATCGCGATTTGCGGGAAGACGTTTGAGGAGCAGATGCACGTGGCATAGCCTGAAAATTGACTAGAATTTTTAAATTAGAATTTCATATAGTGTAAGATTGACACAATGTTTAAAGCTTCAAAAAAATGATAACAACTGGCACAGAAAAACCACGGATGTATCCATGA</canonical>
            <polymorphic>TTGGAATTGAGTTGGGAATTTTGTACTGAAGCAGTCGAAAAACAGGTGTCTTTCGGAAATTGACAAAAAAAAAAAGAATTTTCAAATAATTCTGTGAATGCAAATTTTTCAATCTATGTGTGTTTCAAACCCTCCAAAATGTTCAAAGAAATCGGACTTGTGAAAACGGTGAAAATAACCGAAAATCATATACATACTCATCTGGTAGCTCACTGGACCATGGCTCTGGCGGCACACAATCTCCCACTTCTTCCTTTTTCAGTTGACGAAGAAGACGTGGCATCTCTTGATTCTTTTTTTCTAGATACGGACCACAGATTTTGTTCAAGGCGGCTGAAATTTTTGAAATGATTTCATGAGAAAAAACCTTTGTATGCTTACCATAGGCTTCTGAAAATTTGTTGGTTTTTTGAAGGACGCAAGCGTAGCTGAACCAGACATTATCCTGATGTTCCAGTTGATTATATTCCTCGAAACTTTCGGGTTCCCGAAGTTCACCRGGTGTGAATGCAATACTCATATCGAATGATGCTATGAAGGTTTTCAGGATCTAAAATGTTTAAGAATTATTCAATTTTAGATAAATTTGGAGAAACTCACAGCTCCAGCCTGCGCATATCGTTTCGTTTTATCGTAAAACTCGCAAATACATTTGTAGATATTACCGTCAGCTTCAGTGCGAGCCAAAGCTAAACGACTTCCGTTCTGTCCTTGATTTGTTATCTCATACAAGAGGATGGTGTCTTCTGCATAACCGTGCTCGCAAAGAATTCGAAGATGTTCCCATATGGGGACTGGTCGTTTCAACATCGCCATTGGTTTTGTTGCAGAACATCGCGATTTGCGGGAAGACGTTTGAGGAGCAGATGCACGTGGCATAGCCTGAAAATTGACTAGAATTTTTAAATTAGAATTTCATATAGTGTAAGATTGACACAATGTTTAAAGCTTCAAAAAAATGATAACAACTGGCACAGAAAAACCACGGATGTATCCATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGCTGAACCAGACATTATCC</pcr_primer_p1>
		<pcr_primer_p2>AAGCTGACGGTAATATCTACAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAGCTGAACCAGACATTATCCTGATGTTCCAGTTGATTATATTCCTCGAAACTTTCGGGTTCCCGAAGTTCACCGGGTGTGAATGCAATACTCATATCGAATGATGCTATGAAGGTTTTCAGGATCTAAAATGTTTAAGAATTATTCAATTTTAGATAAATTTGGAGAAACTCACAGCTCCAGCCTGCGCATATCGTTTCGTTTTATCGTAAAACTCGCAAATACATTTGTAGATATTACCGTCAGCTT</canonical_amplicon>
		<polymorphic_amplicon>GTAGCTGAACCAGACATTATCCTGATGTTCCAGTTGATTATATTCCTCGAAACTTTCGGGTTCCCGAAGTTCACCRGGTGTGAATGCAATACTCATATCGAATGATGCTATGAAGGTTTTCAGGATCTAAAATGTTTAAGAATTATTCAATTTTAGATAAATTTGGAGAAACTCACAGCTCCAGCCTGCGCATATCGTTTCGTTTTATCGTAAAACTCGCAAATACATTTGTAGATATTACCGTCAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23253</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>180183</contig_pos>
        <strand>+</strand>
        <context>CAATTTTCCT[C/T]CCCCAGACAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTATTGATGTTTCTGAACAAGAGAGAGCTCATTTTGCCTCCAATTTTCCT</left_flank>
        <right_flank>CCCCAGACAGTTCTTTGCTCTATGAATTCAGCAAAATTCATAGAGCTTCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAACTACGCCGTAAACATTGATTCGCTCAACATTTACGCATCATTATGTTCCAAAACACTGTAAATTTTTTTCTATGAATCCATTTCCCAGGTTTGTACCAGAACTTCAACGTGGTTTCCTCTCCTTTTGTATCCCATGACAACTTCGCGAGCGTGCGACGAAAATAATTATTTAGTATACCTTTTTCTGGCGAATCTTTCTGTGTCCATCGCTCACTTAATATTCCGATTCGATTTTTCTTCCCGATACAAGTGTGTGTTTAGGTCAAATTGTGTTGTGATGAACGTATTAGGGTTATAGACCCCGGATTTATATTTATTTTTTCTCACTTCCATCTGCCAAAACAAGATACAATTCTTCTATTATACAAACTCTTCCTCAGCAGTCTGATCTAGTTGGCAACACGACTGTGTCAATATTGAGAAAGAGAGAGGGAGAACAACCGCTCTATTGATGTTTCTGAACAAGAGAGAGCTCATTTTGCCTCCAATTTTCCTTCCCCAGACAGTTCTTTGCTCTATGAATTCAGCAAAATTCATAGAGCTTCGTGGGCAGCCGATAATCCGATTTTTGTCCGAAGATTTCCATAGAAAAATTCCTCGAAGTCTGTTTTCTTCTGCAAAGAAATTTCCATTCATCCTTCTTATCTATGATAACATATTTTTTGTCCATTTATTTTTTGTCCATTTTTCCTTTAAAAGTACTATACCCACCTGTAGTCTTCACTTTTTGTTCGGCGGCGATGACGTTTCTCCGACGGTCGGGCTGGTTTTTCCTCTCTCTCCCTGTGTAAATGCAGAAAAAAAGAAAACTGAACTTTGTGATGAGAGACACAGACACATACAGTTTATACTGCTGCTGCCTCGGTCTCAATTTTTCCTTTTTCGAGCGATCCGAATTTTGGAATCGCGATTATTTTGAATAGACAATAGTAACTTTTTTACTTCACTTTTGGTGTTTTTTTCGTTTTTGCAACAAGTTTCTGAATCTAAATTCAT</canonical>
            <polymorphic>TCAACTACGCCGTAAACATTGATTCGCTCAACATTTACGCATCATTATGTTCCAAAACACTGTAAATTTTTTTCTATGAATCCATTTCCCAGGTTTGTACCAGAACTTCAACGTGGTTTCCTCTCCTTTTGTATCCCATGACAACTTCGCGAGCGTGCGACGAAAATAATTATTTAGTATACCTTTTTCTGGCGAATCTTTCTGTGTCCATCGCTCACTTAATATTCCGATTCGATTTTTCTTCCCGATACAAGTGTGTGTTTAGGTCAAATTGTGTTGTGATGAACGTATTAGGGTTATAGACCCCGGATTTATATTTATTTTTTCTCACTTCCATCTGCCAAAACAAGATACAATTCTTCTATTATACAAACTCTTCCTCAGCAGTCTGATCTAGTTGGCAACACGACTGTGTCAATATTGAGAAAGAGAGAGGGAGAACAACCGCTCTATTGATGTTTCTGAACAAGAGAGAGCTCATTTTGCCTCCAATTTTCCTYCCCCAGACAGTTCTTTGCTCTATGAATTCAGCAAAATTCATAGAGCTTCGTGGGCAGCCGATAATCCGATTTTTGTCCGAAGATTTCCATAGAAAAATTCCTCGAAGTCTGTTTTCTTCTGCAAAGAAATTTCCATTCATCCTTCTTATCTATGATAACATATTTTTTGTCCATTTATTTTTTGTCCATTTTTCCTTTAAAAGTACTATACCCACCTGTAGTCTTCACTTTTTGTTCGGCGGCGATGACGTTTCTCCGACGGTCGGGCTGGTTTTTCCTCTCTCTCCCTGTGTAAATGCAGAAAAAAAGAAAACTGAACTTTGTGATGAGAGACACAGACACATACAGTTTATACTGCTGCTGCCTCGGTCTCAATTTTTCCTTTTTCGAGCGATCCGAATTTTGGAATCGCGATTATTTTGAATAGACAATAGTAACTTTTTTACTTCACTTTTGGTGTTTTTTTCGTTTTTGCAACAAGTTTCTGAATCTAAATTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCCCGGATTTATATTTATTTT</pcr_primer_p1>
		<pcr_primer_p2>CACGAAGCTCTATGAATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCCCGGATTTATATTTATTTTTTCTCACTTCCATCTGCCAAAACAAGATACAATTCTTCTATTATACAAACTCTTCCTCAGCAGTCTGATCTAGTTGGCAACACGACTGTGTCAATATTGAGAAAGAGAGAGGGAGAACAACCGCTCTATTGATGTTTCTGAACAAGAGAGAGCTCATTTTGCCTCCAATTTTCCTTCCCCAGACAGTTCTTTGCTCTATGAATTCAGCAAAATTCATAGAGCTTCGTG</canonical_amplicon>
		<polymorphic_amplicon>ACCCCGGATTTATATTTATTTTTTCTCACTTCCATCTGCCAAAACAAGATACAATTCTTCTATTATACAAACTCTTCCTCAGCAGTCTGATCTAGTTGGCAACACGACTGTGTCAATATTGAGAAAGAGAGAGGGAGAACAACCGCTCTATTGATGTTTCTGAACAAGAGAGAGCTCATTTTGCCTCCAATTTTCCTYCCCCAGACAGTTCTTTGCTCTATGAATTCAGCAAAATTCATAGAGCTTCGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23254</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>181892</contig_pos>
        <strand>+</strand>
        <context>CTTATCCGAT[C/T]TTTTTCCCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTAGCAATTCCCGAATATGCTACTGTTGCCTTTCCGCTTCTTATCCGAT</left_flank>
        <right_flank>TTTTTCCCCACGCAGTCCATTTGACATCTCCTTGGAAATATCCACCCAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTTCACATCTTTTGAAGATAGCAGCAAGTCACGCATTTTTACATTTTCAAGTTCCCGAGTGTGCCAACTGAACTTTGATCGGTGTACTTTAAAGGCGTCTCTAGTTTCATAGAGACTGCTGCTTCATTATAGTTATTCAAAATTCTTGGAAGCTAGATTTGGCTTATAGAGGATTTTTCCACCAGAATTATATATTTTTCGAAAGGCATATCATAAATAAATACGAATGCACATGTTTTTTTCCTTCCGTTCGTTTATATCCAATAGCTTATTGTCGAAGATCAGCGTCGGAATTCTCTTAAGGGACTCGTTTCTCTCTGCTCCCTAGTAGTCAAACATTACCACCTGCACACGTTATTTTACATTTCCTTTTCTTCTCTGGGTAACAAATTGTGTACACAGTAAATTCCCTTCTCTTGTAACTTTTTTCTTCTTTTTTCTAGCGATGTTAGCAATTCCCGAATATGCTACTGTTGCCTTTCCGCTTCTTATCCGATTTTTTTCCCCACGCAGTCCATTTGACATCTCCTTGGAAATATCCACCCAAACTACACACAATTTTCTCACTCCGTATTTCTCCTCCCCTTCAGTGTCACAAATTTTGGCTAAGGAAACTAACAATTTGAAGAAAACCTAATGTTCAACAAACTTTTTTTTGAGGAAAATAAGTGCCACAAATCACCTGCAAATTTAGTTATGGAATTATTTTTCATCTTCACTATACTCTTGTTTCCCTGAATAATAAGTTGCAAAATCTCGAAAAATCGCTTCAAGTCCATTACTGGAAACTTCTGGAAAGTTCTGGGATTGTTTTTGAATTTCCGTCAATTTTGTAATTTTTCGAGAGAAAAAATTTATTTTTTTCTCCAGTTTTTTGCAAACGTTTTAGACCTTTTTAGGTTTTTCAACTATTTTTAAAGATTCTTTTCCGATTCTTCCGATTTCTCTGTCTGAAATTTGACAGGATGGTGATCGCGAAGATTACTGTAATTTACTGT</canonical>
            <polymorphic>TCTTTCACATCTTTTGAAGATAGCAGCAAGTCACGCATTTTTACATTTTCAAGTTCCCGAGTGTGCCAACTGAACTTTGATCGGTGTACTTTAAAGGCGTCTCTAGTTTCATAGAGACTGCTGCTTCATTATAGTTATTCAAAATTCTTGGAAGCTAGATTTGGCTTATAGAGGATTTTTCCACCAGAATTATATATTTTTCGAAAGGCATATCATAAATAAATACGAATGCACATGTTTTTTTCCTTCCGTTCGTTTATATCCAATAGCTTATTGTCGAAGATCAGCGTCGGAATTCTCTTAAGGGACTCGTTTCTCTCTGCTCCCTAGTAGTCAAACATTACCACCTGCACACGTTATTTTACATTTCCTTTTCTTCTCTGGGTAACAAATTGTGTACACAGTAAATTCCCTTCTCTTGTAACTTTTTTCTTCTTTTTTCTAGCGATGTTAGCAATTCCCGAATATGCTACTGTTGCCTTTCCGCTTCTTATCCGATYTTTTTCCCCACGCAGTCCATTTGACATCTCCTTGGAAATATCCACCCAAACTACACACAATTTTCTCACTCCGTATTTCTCCTCCCCTTCAGTGTCACAAATTTTGGCTAAGGAAACTAACAATTTGAAGAAAACCTAATGTTCAACAAACTTTTTTTTGAGGAAAATAAGTGCCACAAATCACCTGCAAATTTAGTTATGGAATTATTTTTCATCTTCACTATACTCTTGTTTCCCTGAATAATAAGTTGCAAAATCTCGAAAAATCGCTTCAAGTCCATTACTGGAAACTTCTGGAAAGTTCTGGGATTGTTTTTGAATTTCCGTCAATTTTGTAATTTTTCGAGAGAAAAAATTTATTTTTTTCTCCAGTTTTTTGCAAACGTTTTAGACCTTTTTAGGTTTTTCAACTATTTTTAAAGATTCTTTTCCGATTCTTCCGATTTCTCTGTCTGAAATTTGACAGGATGGTGATCGCGAAGATTACTGTAATTTACTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTACACAGTAAATTCCCTTCTC</pcr_primer_p1>
		<pcr_primer_p2>TGAACATTAGGTTTTCTTCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTACACAGTAAATTCCCTTCTCTTGTAACTTTTTTCTTCTTTTTTCTAGCGATGTTAGCAATTCCCGAATATGCTACTGTTGCCTTTCCGCTTCTTATCCGATTTTTTTCCCCACGCAGTCCATTTGACATCTCCTTGGAAATATCCACCCAAACTACACACAATTTTCTCACTCCGTATTTCTCCTCCCCTTCAGTGTCACAAATTTTGGCTAAGGAAACTAACAATTTGAAGAAAACCTAATGTTCA</canonical_amplicon>
		<polymorphic_amplicon>TGTACACAGTAAATTCCCTTCTCTTGTAACTTTTTTCTTCTTTTTTCTAGCGATGTTAGCAATTCCCGAATATGCTACTGTTGCCTTTCCGCTTCTTATCCGATYTTTTTCCCCACGCAGTCCATTTGACATCTCCTTGGAAATATCCACCCAAACTACACACAATTTTCTCACTCCGTATTTCTCCTCCCCTTCAGTGTCACAAATTTTGGCTAAGGAAACTAACAATTTGAAGAAAACCTAATGTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23255</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>181824</contig_pos>
        <strand>+</strand>
        <context>TAACTTTTTT[A/C]TTCTTTTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGGGTAACAAATTGTGTACACAGTAAATTCCCTTCTCTTGTAACTTTTTT</left_flank>
        <right_flank>TTCTTTTTTCTAGCGATGTTAGCAATTCCCGAATATGCTACTGTTGCCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCCAATTTCAACATGATCTATGAAGCGACTCCAACTTTTTCTCACTCTTTCTCTTCCTCTTCTATTCTTTCACATCTTTTGAAGATAGCAGCAAGTCACGCATTTTTACATTTTCAAGTTCCCGAGTGTGCCAACTGAACTTTGATCGGTGTACTTTAAAGGCGTCTCTAGTTTCATAGAGACTGCTGCTTCATTATAGTTATTCAAAATTCTTGGAAGCTAGATTTGGCTTATAGAGGATTTTTCCACCAGAATTATATATTTTTCGAAAGGCATATCATAAATAAATACGAATGCACATGTTTTTTTCCTTCCGTTCGTTTATATCCAATAGCTTATTGTCGAAGATCAGCGTCGGAATTCTCTTAAGGGACTCGTTTCTCTCTGCTCCCTAGTAGTCAAACATTACCACCTGCACACGTTATTTTACATTTCCTTTTCTTCTCTGGGTAACAAATTGTGTACACAGTAAATTCCCTTCTCTTGTAACTTTTTTCTTCTTTTTTCTAGCGATGTTAGCAATTCCCGAATATGCTACTGTTGCCTTTCCGCTTCTTATCCGATTTTTTTCCCCACGCAGTCCATTTGACATCTCCTTGGAAATATCCACCCAAACTACACACAATTTTCTCACTCCGTATTTCTCCTCCCCTTCAGTGTCACAAATTTTGGCTAAGGAAACTAACAATTTGAAGAAAACCTAATGTTCAACAAACTTTTTTTTGAGGAAAATAAGTGCCACAAATCACCTGCAAATTTAGTTATGGAATTATTTTTCATCTTCACTATACTCTTGTTTCCCTGAATAATAAGTTGCAAAATCTCGAAAAATCGCTTCAAGTCCATTACTGGAAACTTCTGGAAAGTTCTGGGATTGTTTTTGAATTTCCGTCAATTTTGTAATTTTTCGAGAGAAAAAATTTATTTTTTTCTCCAGTTTTTTGCAAACGTTTTAGACCTTTTTAGGTTTTTCAACTATTTTTAAAGATTCTTTTCC</canonical>
            <polymorphic>TTTCCCAATTTCAACATGATCTATGAAGCGACTCCAACTTTTTCTCACTCTTTCTCTTCCTCTTCTATTCTTTCACATCTTTTGAAGATAGCAGCAAGTCACGCATTTTTACATTTTCAAGTTCCCGAGTGTGCCAACTGAACTTTGATCGGTGTACTTTAAAGGCGTCTCTAGTTTCATAGAGACTGCTGCTTCATTATAGTTATTCAAAATTCTTGGAAGCTAGATTTGGCTTATAGAGGATTTTTCCACCAGAATTATATATTTTTCGAAAGGCATATCATAAATAAATACGAATGCACATGTTTTTTTCCTTCCGTTCGTTTATATCCAATAGCTTATTGTCGAAGATCAGCGTCGGAATTCTCTTAAGGGACTCGTTTCTCTCTGCTCCCTAGTAGTCAAACATTACCACCTGCACACGTTATTTTACATTTCCTTTTCTTCTCTGGGTAACAAATTGTGTACACAGTAAATTCCCTTCTCTTGTAACTTTTTTMTTCTTTTTTCTAGCGATGTTAGCAATTCCCGAATATGCTACTGTTGCCTTTCCGCTTCTTATCCGATTTTTTTCCCCACGCAGTCCATTTGACATCTCCTTGGAAATATCCACCCAAACTACACACAATTTTCTCACTCCGTATTTCTCCTCCCCTTCAGTGTCACAAATTTTGGCTAAGGAAACTAACAATTTGAAGAAAACCTAATGTTCAACAAACTTTTTTTTGAGGAAAATAAGTGCCACAAATCACCTGCAAATTTAGTTATGGAATTATTTTTCATCTTCACTATACTCTTGTTTCCCTGAATAATAAGTTGCAAAATCTCGAAAAATCGCTTCAAGTCCATTACTGGAAACTTCTGGAAAGTTCTGGGATTGTTTTTGAATTTCCGTCAATTTTGTAATTTTTCGAGAGAAAAAATTTATTTTTTTCTCCAGTTTTTTGCAAACGTTTTAGACCTTTTTAGGTTTTTCAACTATTTTTAAAGATTCTTTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCCTAGTAGTCAAACATTACCA</pcr_primer_p1>
		<pcr_primer_p2>GGAGTGAGAAAATTGTGTGTAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCCTAGTAGTCAAACATTACCACCTGCACACGTTATTTTACATTTCCTTTTCTTCTCTGGGTAACAAATTGTGTACACAGTAAATTCCCTTCTCTTGTAACTTTTTTCTTCTTTTTTCTAGCGATGTTAGCAATTCCCGAATATGCTACTGTTGCCTTTCCGCTTCTTATCCGATTTTTTTCCCCACGCAGTCCATTTGACATCTCCTTGGAAATATCCACCCAAACTACACACAATTTTCTCACTCC</canonical_amplicon>
		<polymorphic_amplicon>TCCCTAGTAGTCAAACATTACCACCTGCACACGTTATTTTACATTTCCTTTTCTTCTCTGGGTAACAAATTGTGTACACAGTAAATTCCCTTCTCTTGTAACTTTTTTMTTCTTTTTTCTAGCGATGTTAGCAATTCCCGAATATGCTACTGTTGCCTTTCCGCTTCTTATCCGATTTTTTTCCCCACGCAGTCCATTTGACATCTCCTTGGAAATATCCACCCAAACTACACACAATTTTCTCACTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23256</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>181689</contig_pos>
        <strand>+</strand>
        <context>GCGTCGGAAT[C/T]CTCTTAAGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCGTTCGTTTATATCCAATAGCTTATTGTCGAAGATCAGCGTCGGAAT</left_flank>
        <right_flank>CTCTTAAGGGACTCGTTTCTCTCTGCTCCCTAGTAGTCAAACATTACCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTCGGTAAAGAAGCTTATCCGCCTTTGTTATGGGGTCAACCTTTAATAACGTTATTATCCGTGTTCAATCCAAATTTGGGATTTCAAAAGTATTTACTTCAAGAAAGAAGTTTTAACTTTGGAAAACAAAAAGTTTCCCAATTTCAACATGATCTATGAAGCGACTCCAACTTTTTCTCACTCTTTCTCTTCCTCTTCTATTCTTTCACATCTTTTGAAGATAGCAGCAAGTCACGCATTTTTACATTTTCAAGTTCCCGAGTGTGCCAACTGAACTTTGATCGGTGTACTTTAAAGGCGTCTCTAGTTTCATAGAGACTGCTGCTTCATTATAGTTATTCAAAATTCTTGGAAGCTAGATTTGGCTTATAGAGGATTTTTCCACCAGAATTATATATTTTTCGAAAGGCATATCATAAATAAATACGAATGCACATGTTTTTTTCCTTCCGTTCGTTTATATCCAATAGCTTATTGTCGAAGATCAGCGTCGGAATTCTCTTAAGGGACTCGTTTCTCTCTGCTCCCTAGTAGTCAAACATTACCACCTGCACACGTTATTTTACATTTCCTTTTCTTCTCTGGGTAACAAATTGTGTACACAGTAAATTCCCTTCTCTTGTAACTTTTTTCTTCTTTTTTCTAGCGATGTTAGCAATTCCCGAATATGCTACTGTTGCCTTTCCGCTTCTTATCCGATTTTTTTCCCCACGCAGTCCATTTGACATCTCCTTGGAAATATCCACCCAAACTACACACAATTTTCTCACTCCGTATTTCTCCTCCCCTTCAGTGTCACAAATTTTGGCTAAGGAAACTAACAATTTGAAGAAAACCTAATGTTCAACAAACTTTTTTTTGAGGAAAATAAGTGCCACAAATCACCTGCAAATTTAGTTATGGAATTATTTTTCATCTTCACTATACTCTTGTTTCCCTGAATAATAAGTTGCAAAATCTCGAAAAATCGCTTCAAGTCCATTACTGGAAACTTCTGG</canonical>
            <polymorphic>TATTCGGTAAAGAAGCTTATCCGCCTTTGTTATGGGGTCAACCTTTAATAACGTTATTATCCGTGTTCAATCCAAATTTGGGATTTCAAAAGTATTTACTTCAAGAAAGAAGTTTTAACTTTGGAAAACAAAAAGTTTCCCAATTTCAACATGATCTATGAAGCGACTCCAACTTTTTCTCACTCTTTCTCTTCCTCTTCTATTCTTTCACATCTTTTGAAGATAGCAGCAAGTCACGCATTTTTACATTTTCAAGTTCCCGAGTGTGCCAACTGAACTTTGATCGGTGTACTTTAAAGGCGTCTCTAGTTTCATAGAGACTGCTGCTTCATTATAGTTATTCAAAATTCTTGGAAGCTAGATTTGGCTTATAGAGGATTTTTCCACCAGAATTATATATTTTTCGAAAGGCATATCATAAATAAATACGAATGCACATGTTTTTTTCCTTCCGTTCGTTTATATCCAATAGCTTATTGTCGAAGATCAGCGTCGGAATYCTCTTAAGGGACTCGTTTCTCTCTGCTCCCTAGTAGTCAAACATTACCACCTGCACACGTTATTTTACATTTCCTTTTCTTCTCTGGGTAACAAATTGTGTACACAGTAAATTCCCTTCTCTTGTAACTTTTTTCTTCTTTTTTCTAGCGATGTTAGCAATTCCCGAATATGCTACTGTTGCCTTTCCGCTTCTTATCCGATTTTTTTCCCCACGCAGTCCATTTGACATCTCCTTGGAAATATCCACCCAAACTACACACAATTTTCTCACTCCGTATTTCTCCTCCCCTTCAGTGTCACAAATTTTGGCTAAGGAAACTAACAATTTGAAGAAAACCTAATGTTCAACAAACTTTTTTTTGAGGAAAATAAGTGCCACAAATCACCTGCAAATTTAGTTATGGAATTATTTTTCATCTTCACTATACTCTTGTTTCCCTGAATAATAAGTTGCAAAATCTCGAAAAATCGCTTCAAGTCCATTACTGGAAACTTCTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>271 193 151 113 108 90 74</canonical_bands>
                <polymorphic_bands>271 264 193 108 90 74</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>204 106 103 97 95 74 68 67 49 45 41 22 16 13</canonical_bands>
                <polymorphic_bands>204 203 103 95 74 68 67 49 45 41 22 16 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATTCAAAATTCTTGGAAGCTA</pcr_primer_p1>
		<pcr_primer_p2>CAGAGAAGAAAAGGAAATGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTATTCAAAATTCTTGGAAGCTAGATTTGGCTTATAGAGGATTTTTCCACCAGAATTATATATTTTTCGAAAGGCATATCATAAATAAATACGAATGCACATGTTTTTTTCCTTCCGTTCGTTTATATCCAATAGCTTATTGTCGAAGATCAGCGTCGGAATTCTCTTAAGGGACTCGTTTCTCTCTGCTCCCTAGTAGTCAAACATTACCACCTGCACACGTTATTTTACATTTCCTTTTCTTCTCTG</canonical_amplicon>
		<polymorphic_amplicon>TTATTCAAAATTCTTGGAAGCTAGATTTGGCTTATAGAGGATTTTTCCACCAGAATTATATATTTTTCGAAAGGCATATCATAAATAAATACGAATGCACATGTTTTTTTCCTTCCGTTCGTTTATATCCAATAGCTTATTGTCGAAGATCAGCGTCGGAATYCTCTTAAGGGACTCGTTTCTCTCTGCTCCCTAGTAGTCAAACATTACCACCTGCACACGTTATTTTACATTTCCTTTTCTTCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23257</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>181579</contig_pos>
        <strand>+</strand>
        <context>TTTTCCACCA[A/G]AATTATATAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCAAAATTCTTGGAAGCTAGATTTGGCTTATAGAGGATTTTTCCACCA</left_flank>
        <right_flank>AATTATATATTTTTCGAAAGGCATATCATAAATAAATACGAATGCACATG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATAATTGTTTCAATGGTCCCCTTCTCTGCCAGCCGTTCGCGTTCTCTGACCATAGAAACAAGTGTCAAGCATATCCTTCCCGATGCTTCGGGAAGGATGACCCAGTAATTATTCGGTAAAGAAGCTTATCCGCCTTTGTTATGGGGTCAACCTTTAATAACGTTATTATCCGTGTTCAATCCAAATTTGGGATTTCAAAAGTATTTACTTCAAGAAAGAAGTTTTAACTTTGGAAAACAAAAAGTTTCCCAATTTCAACATGATCTATGAAGCGACTCCAACTTTTTCTCACTCTTTCTCTTCCTCTTCTATTCTTTCACATCTTTTGAAGATAGCAGCAAGTCACGCATTTTTACATTTTCAAGTTCCCGAGTGTGCCAACTGAACTTTGATCGGTGTACTTTAAAGGCGTCTCTAGTTTCATAGAGACTGCTGCTTCATTATAGTTATTCAAAATTCTTGGAAGCTAGATTTGGCTTATAGAGGATTTTTCCACCAGAATTATATATTTTTCGAAAGGCATATCATAAATAAATACGAATGCACATGTTTTTTTCCTTCCGTTCGTTTATATCCAATAGCTTATTGTCGAAGATCAGCGTCGGAATTCTCTTAAGGGACTCGTTTCTCTCTGCTCCCTAGTAGTCAAACATTACCACCTGCACACGTTATTTTACATTTCCTTTTCTTCTCTGGGTAACAAATTGTGTACACAGTAAATTCCCTTCTCTTGTAACTTTTTTCTTCTTTTTTCTAGCGATGTTAGCAATTCCCGAATATGCTACTGTTGCCTTTCCGCTTCTTATCCGATTTTTTTCCCCACGCAGTCCATTTGACATCTCCTTGGAAATATCCACCCAAACTACACACAATTTTCTCACTCCGTATTTCTCCTCCCCTTCAGTGTCACAAATTTTGGCTAAGGAAACTAACAATTTGAAGAAAACCTAATGTTCAACAAACTTTTTTTTGAGGAAAATAAGTGCCACAAATCACCTG</canonical>
            <polymorphic>CATAATTGTTTCAATGGTCCCCTTCTCTGCCAGCCGTTCGCGTTCTCTGACCATAGAAACAAGTGTCAAGCATATCCTTCCCGATGCTTCGGGAAGGATGACCCAGTAATTATTCGGTAAAGAAGCTTATCCGCCTTTGTTATGGGGTCAACCTTTAATAACGTTATTATCCGTGTTCAATCCAAATTTGGGATTTCAAAAGTATTTACTTCAAGAAAGAAGTTTTAACTTTGGAAAACAAAAAGTTTCCCAATTTCAACATGATCTATGAAGCGACTCCAACTTTTTCTCACTCTTTCTCTTCCTCTTCTATTCTTTCACATCTTTTGAAGATAGCAGCAAGTCACGCATTTTTACATTTTCAAGTTCCCGAGTGTGCCAACTGAACTTTGATCGGTGTACTTTAAAGGCGTCTCTAGTTTCATAGAGACTGCTGCTTCATTATAGTTATTCAAAATTCTTGGAAGCTAGATTTGGCTTATAGAGGATTTTTCCACCARAATTATATATTTTTCGAAAGGCATATCATAAATAAATACGAATGCACATGTTTTTTTCCTTCCGTTCGTTTATATCCAATAGCTTATTGTCGAAGATCAGCGTCGGAATTCTCTTAAGGGACTCGTTTCTCTCTGCTCCCTAGTAGTCAAACATTACCACCTGCACACGTTATTTTACATTTCCTTTTCTTCTCTGGGTAACAAATTGTGTACACAGTAAATTCCCTTCTCTTGTAACTTTTTTCTTCTTTTTTCTAGCGATGTTAGCAATTCCCGAATATGCTACTGTTGCCTTTCCGCTTCTTATCCGATTTTTTTCCCCACGCAGTCCATTTGACATCTCCTTGGAAATATCCACCCAAACTACACACAATTTTCTCACTCCGTATTTCTCCTCCCCTTCAGTGTCACAAATTTTGGCTAAGGAAACTAACAATTTGAAGAAAACCTAATGTTCAACAAACTTTTTTTTGAGGAAAATAAGTGCCACAAATCACCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTCAAAATTCTTGGAAGCTA</pcr_primer_p1>
		<pcr_primer_p2>CAGAGAAGAAAAGGAAATGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTATTCAAAATTCTTGGAAGCTAGATTTGGCTTATAGAGGATTTTTCCACCAGAATTATATATTTTTCGAAAGGCATATCATAAATAAATACGAATGCACATGTTTTTTTCCTTCCGTTCGTTTATATCCAATAGCTTATTGTCGAAGATCAGCGTCGGAATTCTCTTAAGGGACTCGTTTCTCTCTGCTCCCTAGTAGTCAAACATTACCACCTGCACACGTTATTTTACATTTCCTTTTCTTCTCTG</canonical_amplicon>
		<polymorphic_amplicon>TTATTCAAAATTCTTGGAAGCTAGATTTGGCTTATAGAGGATTTTTCCACCARAATTATATATTTTTCGAAAGGCATATCATAAATAAATACGAATGCACATGTTTTTTTCCTTCCGTTCGTTTATATCCAATAGCTTATTGTCGAAGATCAGCGTCGGAATTCTCTTAAGGGACTCGTTTCTCTCTGCTCCCTAGTAGTCAAACATTACCACCTGCACACGTTATTTTACATTTCCTTTTCTTCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23258</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>219069</contig_pos>
        <strand>+</strand>
        <context>TCATTTTTCT[A/C]TATTTGCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCGTCATCCGGTCTCTATCTAGACACTATCCCATTCTGATTCATTTTTCT</left_flank>
        <right_flank>TATTTGCAAATAAACTTCATTTTATCGTGTTTAGGCATTTCCATCTAGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTCATCCGTCGTTCGTGTGACGTCTCCGCTGCATTGAATCTCCAAAGTCTTGGCAACGAGCTCACCGCTCTCCAGAACCGACTCTCCGAACTGTCAAACTAACTTCTTCTTCACCCTCTTTTTAAAAAGATTCCCTCTCGGTGTTATTCATTGATCATGTCATTAAACCACGAACTTTCTCTCATAAGTTTTTGTTGTCTGTTAAATTTGTGTCCTCCCCTCTCTTTTATTTTTGCTGTTCTAATTTTGTTTTAATTGCCACTTTTTAGCTTTTCGCTCCTCACACACACACACACACACTTTATATTTATTTGGTTTTTTTTTCATCGTTTTTCTTCATCCATCATCCTGTATCTCTTTGTTTACAACAATCCCAAAATCCCGCCCAGTCTTCCGCTCCGTTTGCAGTCTCTCAAAATATCATCGAATTTGTGTGATCCCTTCCGTTCGTCATCCGGTCTCTATCTAGACACTATCCCATTCTGATTCATTTTTCTATATTTGCAAATAAACTTCATTTTATCGTGTTTAGGCATTTCCATCTAGTTTTAGGTCCCACTTGTTCCGGGTAGCGTATCCCATAGTTACCTCCCTCTTCTCGTTTTCTAAATCTCACACTATTTCCCTTAGTTTTTTTATTTTTTAAGTTAGAATTTCCGCATTCAGAAGCCGTCGTCGTCGGAATTTCGGTTTAGAAGCACTTTTGCTGCGATCACTGAGTCATCACTACTGATAAGAATTAAGCCAATCATATGGTTTTTCGATTTTCCGTTCTTCAAAAAGCTGCTATTATTTTCAAAATCTTCGATGAAAAAGTTTTCGTTATCACTAATTTCTTTATTTGTGAGCCGCCAAACGGCATGATAAAAAGTTTTAGTTCCGAAACTCAAACATTGAGAGCATTATGTAACAACGTGGCAATAACTGAGAGCATTATGAAAGAGGTGGACGAGAATTTGGTGGTTGTTTCGACACTTGGAGAAGTCGATTGGTATGAT</canonical>
            <polymorphic>CATTCATCCGTCGTTCGTGTGACGTCTCCGCTGCATTGAATCTCCAAAGTCTTGGCAACGAGCTCACCGCTCTCCAGAACCGACTCTCCGAACTGTCAAACTAACTTCTTCTTCACCCTCTTTTTAAAAAGATTCCCTCTCGGTGTTATTCATTGATCATGTCATTAAACCACGAACTTTCTCTCATAAGTTTTTGTTGTCTGTTAAATTTGTGTCCTCCCCTCTCTTTTATTTTTGCTGTTCTAATTTTGTTTTAATTGCCACTTTTTAGCTTTTCGCTCCTCACACACACACACACACACTTTATATTTATTTGGTTTTTTTTTCATCGTTTTTCTTCATCCATCATCCTGTATCTCTTTGTTTACAACAATCCCAAAATCCCGCCCAGTCTTCCGCTCCGTTTGCAGTCTCTCAAAATATCATCGAATTTGTGTGATCCCTTCCGTTCGTCATCCGGTCTCTATCTAGACACTATCCCATTCTGATTCATTTTTCTMTATTTGCAAATAAACTTCATTTTATCGTGTTTAGGCATTTCCATCTAGTTTTAGGTCCCACTTGTTCCGGGTAGCGTATCCCATAGTTACCTCCCTCTTCTCGTTTTCTAAATCTCACACTATTTCCCTTAGTTTTTTTATTTTTTAAGTTAGAATTTCCGCATTCAGAAGCCGTCGTCGTCGGAATTTCGGTTTAGAAGCACTTTTGCTGCGATCACTGAGTCATCACTACTGATAAGAATTAAGCCAATCATATGGTTTTTCGATTTTCCGTTCTTCAAAAAGCTGCTATTATTTTCAAAATCTTCGATGAAAAAGTTTTCGTTATCACTAATTTCTTTATTTGTGAGCCGCCAAACGGCATGATAAAAAGTTTTAGTTCCGAAACTCAAACATTGAGAGCATTATGTAACAACGTGGCAATAACTGAGAGCATTATGAAAGAGGTGGACGAGAATTTGGTGGTTGTTTCGACACTTGGAGAAGTCGATTGGTATGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCATCGTTTTTCTTCATC</pcr_primer_p1>
		<pcr_primer_p2>AACAAGTGGGACCTAAAACTAGA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCATCGTTTTTCTTCATCCATCATCCTGTATCTCTTTGTTTACAACAATCCCAAAATCCCGCCCAGTCTTCCGCTCCGTTTGCAGTCTCTCAAAATATCATCGAATTTGTGTGATCCCTTCCGTTCGTCATCCGGTCTCTATCTAGACACTATCCCATTCTGATTCATTTTTCTATATTTGCAAATAAACTTCATTTTATCGTGTTTAGGCATTTCCATCTAGTTTTAGGTCCCACTTGTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCATCGTTTTTCTTCATCCATCATCCTGTATCTCTTTGTTTACAACAATCCCAAAATCCCGCCCAGTCTTCCGCTCCGTTTGCAGTCTCTCAAAATATCATCGAATTTGTGTGATCCCTTCCGTTCGTCATCCGGTCTCTATCTAGACACTATCCCATTCTGATTCATTTTTCTMTATTTGCAAATAAACTTCATTTTATCGTGTTTAGGCATTTCCATCTAGTTTTAGGTCCCACTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23259</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>220751</contig_pos>
        <strand>+</strand>
        <context>ACAGGGTTAT[A/C]CTTCCAAGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCCGCAAATCGGCTAACGTTTTAGATGCTCCTTGAGTGGACAGGGTTAT</left_flank>
        <right_flank>CTTCCAAGATAGGCGGCTTTGTCTCGAGAAGATAAATAGATTTTGGAACC</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGTGGATTCGAGAATATTCTTCGCTGTATAGTATCCAGATTTGTCACATCTTGATAGTTATCATTTGGCAAATAGCGATAGAAAGAGAGAGTGGTGCCCGGTGGTTGTGCGATGTTCTCAACACGGATATGATTAAAACCAGCGTAGTTTGGGACTCCATCTGTGTTCTGGCTGTGTGCTGCAAGGAACACAATTGTTGTATCCGTGGCAGTGCTTCTGTCCAATTGCATAGCGCTTCGAGCGGGAACAACGAGAAAGTTGGGATCCTTGGCCATGGTTGGAGTGACAATTAAAAGCTCTCCAGTTAGATTTTTGGTTAGACCTTCGGAGTTTGTTGTTGAAATGGTTAGATCACTATTGACTGTCCATCCTCTTGGCAAACCAGCGTCGTCGAAATAGTTCAATAGATTGAGGAGTCTGAAAATTGTATTTCAAATTTAGGAAGGAATCCGCAAATCGGCTAACGTTTTAGATGCTCCTTGAGTGGACAGGGTTATACTTCCAAGATAGGCGGCTTTGTCTCGAGAAGATAAATAGATTTTGGAACCATCCAGAACATCCTTTATCGGTGTTGCTACTGTGTTATTGAACGAGCTCAATTTATGGATAGTAGAACTAGCCGAAAAGACAGCAGGAATTAAAAGAAAAATCGAGAATAGTGTTCTTGTCATGATGTTTGTGGTGGAAGAAGTGACAGGCTAGGTGTGTCGGGGAAGACAGTCCTTTTAAGTGCTTTCTGTGCTGATATTAAAGAGTGTTGGGGTGGAAACACGTCAGTTTATATGATTAGACAATTTGAATCATCGGCAATGATTAGAGGATCATATTACGTCGGAGGTCTTGGTCTTCTGAAATCAACAGCTTTTATGGCAATTGTTTTGGGGAACTACAGTACCTTCAGTTGATTGTCGGCCATTTTGATCGTCTTCAGAAACTTGGAACTTGCCTGTCAAGTTTCCATTCACTTTGAAAGCTTTGGAGAATGTAAAACAGACCTA</canonical>
            <polymorphic>TGAGTGGATTCGAGAATATTCTTCGCTGTATAGTATCCAGATTTGTCACATCTTGATAGTTATCATTTGGCAAATAGCGATAGAAAGAGAGAGTGGTGCCCGGTGGTTGTGCGATGTTCTCAACACGGATATGATTAAAACCAGCGTAGTTTGGGACTCCATCTGTGTTCTGGCTGTGTGCTGCAAGGAACACAATTGTTGTATCCGTGGCAGTGCTTCTGTCCAATTGCATAGCGCTTCGAGCGGGAACAACGAGAAAGTTGGGATCCTTGGCCATGGTTGGAGTGACAATTAAAAGCTCTCCAGTTAGATTTTTGGTTAGACCTTCGGAGTTTGTTGTTGAAATGGTTAGATCACTATTGACTGTCCATCCTCTTGGCAAACCAGCGTCGTCGAAATAGTTCAATAGATTGAGGAGTCTGAAAATTGTATTTCAAATTTAGGAAGGAATCCGCAAATCGGCTAACGTTTTAGATGCTCCTTGAGTGGACAGGGTTATMCTTCCAAGATAGGCGGCTTTGTCTCGAGAAGATAAATAGATTTTGGAACCATCCAGAACATCCTTTATCGGTGTTGCTACTGTGTTATTGAACGAGCTCAATTTATGGATAGTAGAACTAGCCGAAAAGACAGCAGGAATTAAAAGAAAAATCGAGAATAGTGTTCTTGTCATGATGTTTGTGGTGGAAGAAGTGACAGGCTAGGTGTGTCGGGGAAGACAGTCCTTTTAAGTGCTTTCTGTGCTGATATTAAAGAGTGTTGGGGTGGAAACACGTCAGTTTATATGATTAGACAATTTGAATCATCGGCAATGATTAGAGGATCATATTACGTCGGAGGTCTTGGTCTTCTGAAATCAACAGCTTTTATGGCAATTGTTTTGGGGAACTACAGTACCTTCAGTTGATTGTCGGCCATTTTGATCGTCTTCAGAAACTTGGAACTTGCCTGTCAAGTTTCCATTCACTTTGAAAGCTTTGGAGAATGTAAAACAGACCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATAGATTGAGGAGTCTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCTTTTAATTCCTGCTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAATAGATTGAGGAGTCTGAAAATTGTATTTCAAATTTAGGAAGGAATCCGCAAATCGGCTAACGTTTTAGATGCTCCTTGAGTGGACAGGGTTATACTTCCAAGATAGGCGGCTTTGTCTCGAGAAGATAAATAGATTTTGGAACCATCCAGAACATCCTTTATCGGTGTTGCTACTGTGTTATTGAACGAGCTCAATTTATGGATAGTAGAACTAGCCGAAAAGACAGCAGGAATTAAAAGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CAATAGATTGAGGAGTCTGAAAATTGTATTTCAAATTTAGGAAGGAATCCGCAAATCGGCTAACGTTTTAGATGCTCCTTGAGTGGACAGGGTTATMCTTCCAAGATAGGCGGCTTTGTCTCGAGAAGATAAATAGATTTTGGAACCATCCAGAACATCCTTTATCGGTGTTGCTACTGTGTTATTGAACGAGCTCAATTTATGGATAGTAGAACTAGCCGAAAAGACAGCAGGAATTAAAAGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23260</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>220702</contig_pos>
        <strand>+</strand>
        <context>TAGGAAGGAA[A/T]CCGCAAATCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTCAATAGATTGAGGAGTCTGAAAATTGTATTTCAAATTTAGGAAGGAA</left_flank>
        <right_flank>CCGCAAATCGGCTAACGTTTTAGATGCTCCTTGAGTGGACAGGGTTATAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGATCTGAGTGAAAAATGTGGATTGCATTGCTCCTCCTACAAAGTAACTGAGTGGATTCGAGAATATTCTTCGCTGTATAGTATCCAGATTTGTCACATCTTGATAGTTATCATTTGGCAAATAGCGATAGAAAGAGAGAGTGGTGCCCGGTGGTTGTGCGATGTTCTCAACACGGATATGATTAAAACCAGCGTAGTTTGGGACTCCATCTGTGTTCTGGCTGTGTGCTGCAAGGAACACAATTGTTGTATCCGTGGCAGTGCTTCTGTCCAATTGCATAGCGCTTCGAGCGGGAACAACGAGAAAGTTGGGATCCTTGGCCATGGTTGGAGTGACAATTAAAAGCTCTCCAGTTAGATTTTTGGTTAGACCTTCGGAGTTTGTTGTTGAAATGGTTAGATCACTATTGACTGTCCATCCTCTTGGCAAACCAGCGTCGTCGAAATAGTTCAATAGATTGAGGAGTCTGAAAATTGTATTTCAAATTTAGGAAGGAATCCGCAAATCGGCTAACGTTTTAGATGCTCCTTGAGTGGACAGGGTTATACTTCCAAGATAGGCGGCTTTGTCTCGAGAAGATAAATAGATTTTGGAACCATCCAGAACATCCTTTATCGGTGTTGCTACTGTGTTATTGAACGAGCTCAATTTATGGATAGTAGAACTAGCCGAAAAGACAGCAGGAATTAAAAGAAAAATCGAGAATAGTGTTCTTGTCATGATGTTTGTGGTGGAAGAAGTGACAGGCTAGGTGTGTCGGGGAAGACAGTCCTTTTAAGTGCTTTCTGTGCTGATATTAAAGAGTGTTGGGGTGGAAACACGTCAGTTTATATGATTAGACAATTTGAATCATCGGCAATGATTAGAGGATCATATTACGTCGGAGGTCTTGGTCTTCTGAAATCAACAGCTTTTATGGCAATTGTTTTGGGGAACTACAGTACCTTCAGTTGATTGTCGGCCATTTTGATCGTCTTCAGAAACTTGGAACTTGCCTG</canonical>
            <polymorphic>TCGATCTGAGTGAAAAATGTGGATTGCATTGCTCCTCCTACAAAGTAACTGAGTGGATTCGAGAATATTCTTCGCTGTATAGTATCCAGATTTGTCACATCTTGATAGTTATCATTTGGCAAATAGCGATAGAAAGAGAGAGTGGTGCCCGGTGGTTGTGCGATGTTCTCAACACGGATATGATTAAAACCAGCGTAGTTTGGGACTCCATCTGTGTTCTGGCTGTGTGCTGCAAGGAACACAATTGTTGTATCCGTGGCAGTGCTTCTGTCCAATTGCATAGCGCTTCGAGCGGGAACAACGAGAAAGTTGGGATCCTTGGCCATGGTTGGAGTGACAATTAAAAGCTCTCCAGTTAGATTTTTGGTTAGACCTTCGGAGTTTGTTGTTGAAATGGTTAGATCACTATTGACTGTCCATCCTCTTGGCAAACCAGCGTCGTCGAAATAGTTCAATAGATTGAGGAGTCTGAAAATTGTATTTCAAATTTAGGAAGGAAWCCGCAAATCGGCTAACGTTTTAGATGCTCCTTGAGTGGACAGGGTTATACTTCCAAGATAGGCGGCTTTGTCTCGAGAAGATAAATAGATTTTGGAACCATCCAGAACATCCTTTATCGGTGTTGCTACTGTGTTATTGAACGAGCTCAATTTATGGATAGTAGAACTAGCCGAAAAGACAGCAGGAATTAAAAGAAAAATCGAGAATAGTGTTCTTGTCATGATGTTTGTGGTGGAAGAAGTGACAGGCTAGGTGTGTCGGGGAAGACAGTCCTTTTAAGTGCTTTCTGTGCTGATATTAAAGAGTGTTGGGGTGGAAACACGTCAGTTTATATGATTAGACAATTTGAATCATCGGCAATGATTAGAGGATCATATTACGTCGGAGGTCTTGGTCTTCTGAAATCAACAGCTTTTATGGCAATTGTTTTGGGGAACTACAGTACCTTCAGTTGATTGTCGGCCATTTTGATCGTCTTCAGAAACTTGGAACTTGCCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>352 261 151 148 56 32</canonical_bands>
                <polymorphic_bands>384 261 151 148 56</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>441 352 151 56</canonical_bands>
                <polymorphic_bands>793 151 56</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCAGTTAGATTTTTGGTTAGAC</pcr_primer_p1>
		<pcr_primer_p2>TGGTTCCAAAATCTATTTATCTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCAGTTAGATTTTTGGTTAGACCTTCGGAGTTTGTTGTTGAAATGGTTAGATCACTATTGACTGTCCATCCTCTTGGCAAACCAGCGTCGTCGAAATAGTTCAATAGATTGAGGAGTCTGAAAATTGTATTTCAAATTTAGGAAGGAATCCGCAAATCGGCTAACGTTTTAGATGCTCCTTGAGTGGACAGGGTTATACTTCCAAGATAGGCGGCTTTGTCTCGAGAAGATAAATAGATTTTGGAACCA</canonical_amplicon>
		<polymorphic_amplicon>TCCAGTTAGATTTTTGGTTAGACCTTCGGAGTTTGTTGTTGAAATGGTTAGATCACTATTGACTGTCCATCCTCTTGGCAAACCAGCGTCGTCGAAATAGTTCAATAGATTGAGGAGTCTGAAAATTGTATTTCAAATTTAGGAAGGAAWCCGCAAATCGGCTAACGTTTTAGATGCTCCTTGAGTGGACAGGGTTATACTTCCAAGATAGGCGGCTTTGTCTCGAGAAGATAAATAGATTTTGGAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23261</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>220651</contig_pos>
        <strand>+</strand>
        <context>TCGTCGAAAT[A/C]GTTCAATAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAGATCACTATTGACTGTCCATCCTCTTGGCAAACCAGCGTCGTCGAAAT</left_flank>
        <right_flank>GTTCAATAGATTGAGGAGTCTGAAAATTGTATTTCAAATTTAGGAAGGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACCTCCAACTCCTCGGAACCACACACTGCTTTGCGAGAATTGTATTGGATCGATCTGAGTGAAAAATGTGGATTGCATTGCTCCTCCTACAAAGTAACTGAGTGGATTCGAGAATATTCTTCGCTGTATAGTATCCAGATTTGTCACATCTTGATAGTTATCATTTGGCAAATAGCGATAGAAAGAGAGAGTGGTGCCCGGTGGTTGTGCGATGTTCTCAACACGGATATGATTAAAACCAGCGTAGTTTGGGACTCCATCTGTGTTCTGGCTGTGTGCTGCAAGGAACACAATTGTTGTATCCGTGGCAGTGCTTCTGTCCAATTGCATAGCGCTTCGAGCGGGAACAACGAGAAAGTTGGGATCCTTGGCCATGGTTGGAGTGACAATTAAAAGCTCTCCAGTTAGATTTTTGGTTAGACCTTCGGAGTTTGTTGTTGAAATGGTTAGATCACTATTGACTGTCCATCCTCTTGGCAAACCAGCGTCGTCGAAATAGTTCAATAGATTGAGGAGTCTGAAAATTGTATTTCAAATTTAGGAAGGAATCCGCAAATCGGCTAACGTTTTAGATGCTCCTTGAGTGGACAGGGTTATACTTCCAAGATAGGCGGCTTTGTCTCGAGAAGATAAATAGATTTTGGAACCATCCAGAACATCCTTTATCGGTGTTGCTACTGTGTTATTGAACGAGCTCAATTTATGGATAGTAGAACTAGCCGAAAAGACAGCAGGAATTAAAAGAAAAATCGAGAATAGTGTTCTTGTCATGATGTTTGTGGTGGAAGAAGTGACAGGCTAGGTGTGTCGGGGAAGACAGTCCTTTTAAGTGCTTTCTGTGCTGATATTAAAGAGTGTTGGGGTGGAAACACGTCAGTTTATATGATTAGACAATTTGAATCATCGGCAATGATTAGAGGATCATATTACGTCGGAGGTCTTGGTCTTCTGAAATCAACAGCTTTTATGGCAATTGTTTTGGGGAACTACAGTACCTT</canonical>
            <polymorphic>AAACCTCCAACTCCTCGGAACCACACACTGCTTTGCGAGAATTGTATTGGATCGATCTGAGTGAAAAATGTGGATTGCATTGCTCCTCCTACAAAGTAACTGAGTGGATTCGAGAATATTCTTCGCTGTATAGTATCCAGATTTGTCACATCTTGATAGTTATCATTTGGCAAATAGCGATAGAAAGAGAGAGTGGTGCCCGGTGGTTGTGCGATGTTCTCAACACGGATATGATTAAAACCAGCGTAGTTTGGGACTCCATCTGTGTTCTGGCTGTGTGCTGCAAGGAACACAATTGTTGTATCCGTGGCAGTGCTTCTGTCCAATTGCATAGCGCTTCGAGCGGGAACAACGAGAAAGTTGGGATCCTTGGCCATGGTTGGAGTGACAATTAAAAGCTCTCCAGTTAGATTTTTGGTTAGACCTTCGGAGTTTGTTGTTGAAATGGTTAGATCACTATTGACTGTCCATCCTCTTGGCAAACCAGCGTCGTCGAAATMGTTCAATAGATTGAGGAGTCTGAAAATTGTATTTCAAATTTAGGAAGGAATCCGCAAATCGGCTAACGTTTTAGATGCTCCTTGAGTGGACAGGGTTATACTTCCAAGATAGGCGGCTTTGTCTCGAGAAGATAAATAGATTTTGGAACCATCCAGAACATCCTTTATCGGTGTTGCTACTGTGTTATTGAACGAGCTCAATTTATGGATAGTAGAACTAGCCGAAAAGACAGCAGGAATTAAAAGAAAAATCGAGAATAGTGTTCTTGTCATGATGTTTGTGGTGGAAGAAGTGACAGGCTAGGTGTGTCGGGGAAGACAGTCCTTTTAAGTGCTTTCTGTGCTGATATTAAAGAGTGTTGGGGTGGAAACACGTCAGTTTATATGATTAGACAATTTGAATCATCGGCAATGATTAGAGGATCATATTACGTCGGAGGTCTTGGTCTTCTGAAATCAACAGCTTTTATGGCAATTGTTTTGGGGAACTACAGTACCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAGTTAGATTTTTGGTTAGAC</pcr_primer_p1>
		<pcr_primer_p2>TGGTTCCAAAATCTATTTATCTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCAGTTAGATTTTTGGTTAGACCTTCGGAGTTTGTTGTTGAAATGGTTAGATCACTATTGACTGTCCATCCTCTTGGCAAACCAGCGTCGTCGAAATAGTTCAATAGATTGAGGAGTCTGAAAATTGTATTTCAAATTTAGGAAGGAATCCGCAAATCGGCTAACGTTTTAGATGCTCCTTGAGTGGACAGGGTTATACTTCCAAGATAGGCGGCTTTGTCTCGAGAAGATAAATAGATTTTGGAACCA</canonical_amplicon>
		<polymorphic_amplicon>TCCAGTTAGATTTTTGGTTAGACCTTCGGAGTTTGTTGTTGAAATGGTTAGATCACTATTGACTGTCCATCCTCTTGGCAAACCAGCGTCGTCGAAATMGTTCAATAGATTGAGGAGTCTGAAAATTGTATTTCAAATTTAGGAAGGAATCCGCAAATCGGCTAACGTTTTAGATGCTCCTTGAGTGGACAGGGTTATACTTCCAAGATAGGCGGCTTTGTCTCGAGAAGATAAATAGATTTTGGAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23262</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>220467</contig_pos>
        <strand>+</strand>
        <context>CGTGGCAGTG[C/T]TTCTGTCCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTTCTGGCTGTGTGCTGCAAGGAACACAATTGTTGTATCCGTGGCAGTG</left_flank>
        <right_flank>TTCTGTCCAATTGCATAGCGCTTCGAGCGGGAACAACGAGAAAGTTGGGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTCCAGCAAACATGAATTTTACCTGACTATTAATAGACCCCAGCTGATTGTTAGACATTCCAGTGACAGTGACAGCTCCAGTTTGAATAGTCGCTGTGTCAACTGCGAAAGACGATTTACTTATATTTGAAAACAATCCTGGTGGCCTATTCTTACCATAACTATCTGAAACATTGAGCTTGAAACCTCCAACTCCTCGGAACCACACACTGCTTTGCGAGAATTGTATTGGATCGATCTGAGTGAAAAATGTGGATTGCATTGCTCCTCCTACAAAGTAACTGAGTGGATTCGAGAATATTCTTCGCTGTATAGTATCCAGATTTGTCACATCTTGATAGTTATCATTTGGCAAATAGCGATAGAAAGAGAGAGTGGTGCCCGGTGGTTGTGCGATGTTCTCAACACGGATATGATTAAAACCAGCGTAGTTTGGGACTCCATCTGTGTTCTGGCTGTGTGCTGCAAGGAACACAATTGTTGTATCCGTGGCAGTGCTTCTGTCCAATTGCATAGCGCTTCGAGCGGGAACAACGAGAAAGTTGGGATCCTTGGCCATGGTTGGAGTGACAATTAAAAGCTCTCCAGTTAGATTTTTGGTTAGACCTTCGGAGTTTGTTGTTGAAATGGTTAGATCACTATTGACTGTCCATCCTCTTGGCAAACCAGCGTCGTCGAAATAGTTCAATAGATTGAGGAGTCTGAAAATTGTATTTCAAATTTAGGAAGGAATCCGCAAATCGGCTAACGTTTTAGATGCTCCTTGAGTGGACAGGGTTATACTTCCAAGATAGGCGGCTTTGTCTCGAGAAGATAAATAGATTTTGGAACCATCCAGAACATCCTTTATCGGTGTTGCTACTGTGTTATTGAACGAGCTCAATTTATGGATAGTAGAACTAGCCGAAAAGACAGCAGGAATTAAAAGAAAAATCGAGAATAGTGTTCTTGTCATGATGTTTGTGGTGGAAGAAGTGACAGGCTAGGTGTGTCGGGGA</canonical>
            <polymorphic>GTCTCCAGCAAACATGAATTTTACCTGACTATTAATAGACCCCAGCTGATTGTTAGACATTCCAGTGACAGTGACAGCTCCAGTTTGAATAGTCGCTGTGTCAACTGCGAAAGACGATTTACTTATATTTGAAAACAATCCTGGTGGCCTATTCTTACCATAACTATCTGAAACATTGAGCTTGAAACCTCCAACTCCTCGGAACCACACACTGCTTTGCGAGAATTGTATTGGATCGATCTGAGTGAAAAATGTGGATTGCATTGCTCCTCCTACAAAGTAACTGAGTGGATTCGAGAATATTCTTCGCTGTATAGTATCCAGATTTGTCACATCTTGATAGTTATCATTTGGCAAATAGCGATAGAAAGAGAGAGTGGTGCCCGGTGGTTGTGCGATGTTCTCAACACGGATATGATTAAAACCAGCGTAGTTTGGGACTCCATCTGTGTTCTGGCTGTGTGCTGCAAGGAACACAATTGTTGTATCCGTGGCAGTGYTTCTGTCCAATTGCATAGCGCTTCGAGCGGGAACAACGAGAAAGTTGGGATCCTTGGCCATGGTTGGAGTGACAATTAAAAGCTCTCCAGTTAGATTTTTGGTTAGACCTTCGGAGTTTGTTGTTGAAATGGTTAGATCACTATTGACTGTCCATCCTCTTGGCAAACCAGCGTCGTCGAAATAGTTCAATAGATTGAGGAGTCTGAAAATTGTATTTCAAATTTAGGAAGGAATCCGCAAATCGGCTAACGTTTTAGATGCTCCTTGAGTGGACAGGGTTATACTTCCAAGATAGGCGGCTTTGTCTCGAGAAGATAAATAGATTTTGGAACCATCCAGAACATCCTTTATCGGTGTTGCTACTGTGTTATTGAACGAGCTCAATTTATGGATAGTAGAACTAGCCGAAAAGACAGCAGGAATTAAAAGAAAAATCGAGAATAGTGTTCTTGTCATGATGTTTGTGGTGGAAGAAGTGACAGGCTAGGTGTGTCGGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGCGATAGAAAGAGAGAGTGG</pcr_primer_p1>
		<pcr_primer_p2>CTAACCAAAAATCTAACTGGAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATAGCGATAGAAAGAGAGAGTGGTGCCCGGTGGTTGTGCGATGTTCTCAACACGGATATGATTAAAACCAGCGTAGTTTGGGACTCCATCTGTGTTCTGGCTGTGTGCTGCAAGGAACACAATTGTTGTATCCGTGGCAGTGCTTCTGTCCAATTGCATAGCGCTTCGAGCGGGAACAACGAGAAAGTTGGGATCCTTGGCCATGGTTGGAGTGACAATTAAAAGCTCTCCAGTTAGATTTTTGGTTAG</canonical_amplicon>
		<polymorphic_amplicon>ATAGCGATAGAAAGAGAGAGTGGTGCCCGGTGGTTGTGCGATGTTCTCAACACGGATATGATTAAAACCAGCGTAGTTTGGGACTCCATCTGTGTTCTGGCTGTGTGCTGCAAGGAACACAATTGTTGTATCCGTGGCAGTGYTTCTGTCCAATTGCATAGCGCTTCGAGCGGGAACAACGAGAAAGTTGGGATCCTTGGCCATGGTTGGAGTGACAATTAAAAGCTCTCCAGTTAGATTTTTGGTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23263</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>226304</contig_pos>
        <strand>+</strand>
        <context>CGAGAGTCGA[G/T]GCTAGAAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTAATTCCTGACCATGACGAGGAGTGGAATCAACAGGAACCGAGAGTCGA</left_flank>
        <right_flank>GCTAGAAATAGAAGAGCAAATTGTTTCGAGAGTTTCAAATAAAAAGAAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATAGTTAATCCTCCACTGATCGTAATTTTCTGTGGGATTCCGTCTGGTTGCACTGCTGCCAGATCAGAAAGTCTACAACCAAATAATTCAAGCTTAAGAATGCCGCTTTTGCACTTACAAGTAGGGTTTCCCTCCTGTCACCAATTGGATATTATTTAAACTTGCTACGGCATCATTAGAGGCAACATACAGGCTTCCTCCTTCCTCCACATTATTTACCTGGTAGTTCGTACCATTCGTGTAATCTTTCAAAATCAAAACTACTGGGTCCGCAGCAACATTAGAAACAATAGTAGCAGAAAAAAGAAAAACGAGGATAGAGCAAGCCCGCATCACTGCTGAATGAAGGAATGTTTATGGGAAACGCCTTACACTCTCGCTAATTTAAGCCAATTTCAAGCTGCTGCTGATAACACAGGAGTCACAATTGTAATGATGTTCTGTGTCTTAATTCCTGACCATGACGAGGAGTGGAATCAACAGGAACCGAGAGTCGATGCTAGAAATAGAAGAGCAAATTGTTTCGAGAGTTTCAAATAAAAAGAAAAAACGAATTAAAGCTAGAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCTGGCGGTATTTGTAGTTGTAAACACTGTAGTAGTAGAGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAGTGGGCACCAATCCTCGAGTGAATCCATAATATTGACAGTAGAAAGCGCCAGGAATCATATCTGCTGAGTTGGTTACCAGTTTCGAAGCTTGCATATAAGTGGTCAGCAAGGCATGCTTCACAAAAGTGTCTTCGTTGTAGCTGAAAATTTCCGGAGAATAAAACTTTTTAGGTACGGTATATGTCGTTGTGGGACCTTCGGCCACGCGATTTTCTGAACCTAATGCTAGAAAGGAAACCAAATTATTTTGGGAGCATAAATAGGTCAACGTCGTTCCTTAAGTATAACGGTAGCGATAAGAAATGACTAGAT</canonical>
            <polymorphic>TGATAGTTAATCCTCCACTGATCGTAATTTTCTGTGGGATTCCGTCTGGTTGCACTGCTGCCAGATCAGAAAGTCTACAACCAAATAATTCAAGCTTAAGAATGCCGCTTTTGCACTTACAAGTAGGGTTTCCCTCCTGTCACCAATTGGATATTATTTAAACTTGCTACGGCATCATTAGAGGCAACATACAGGCTTCCTCCTTCCTCCACATTATTTACCTGGTAGTTCGTACCATTCGTGTAATCTTTCAAAATCAAAACTACTGGGTCCGCAGCAACATTAGAAACAATAGTAGCAGAAAAAAGAAAAACGAGGATAGAGCAAGCCCGCATCACTGCTGAATGAAGGAATGTTTATGGGAAACGCCTTACACTCTCGCTAATTTAAGCCAATTTCAAGCTGCTGCTGATAACACAGGAGTCACAATTGTAATGATGTTCTGTGTCTTAATTCCTGACCATGACGAGGAGTGGAATCAACAGGAACCGAGAGTCGAKGCTAGAAATAGAAGAGCAAATTGTTTCGAGAGTTTCAAATAAAAAGAAAAAACGAATTAAAGCTAGAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCTGGCGGTATTTGTAGTTGTAAACACTGTAGTAGTAGAGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAGTGGGCACCAATCCTCGAGTGAATCCATAATATTGACAGTAGAAAGCGCCAGGAATCATATCTGCTGAGTTGGTTACCAGTTTCGAAGCTTGCATATAAGTGGTCAGCAAGGCATGCTTCACAAAAGTGTCTTCGTTGTAGCTGAAAATTTCCGGAGAATAAAACTTTTTAGGTACGGTATATGTCGTTGTGGGACCTTCGGCCACGCGATTTTCTGAACCTAATGCTAGAAAGGAAACCAAATTATTTTGGGAGCATAAATAGGTCAACGTCGTTCCTTAAGTATAACGGTAGCGATAAGAAATGACTAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTCTGTGTCTTAATTCCTGAC</pcr_primer_p1>
		<pcr_primer_p2>CTACATCAACAACAACGACAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTTCTGTGTCTTAATTCCTGACCATGACGAGGAGTGGAATCAACAGGAACCGAGAGTCGATGCTAGAAATAGAAGAGCAAATTGTTTCGAGAGTTTCAAATAAAAAGAAAAAACGAATTAAAGCTAGAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCTGGCGGTATTTGTAGTTGTAAACACTGTAGTAGTAGAGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAG</canonical_amplicon>
		<polymorphic_amplicon>TGTTCTGTGTCTTAATTCCTGACCATGACGAGGAGTGGAATCAACAGGAACCGAGAGTCGAKGCTAGAAATAGAAGAGCAAATTGTTTCGAGAGTTTCAAATAAAAAGAAAAAACGAATTAAAGCTAGAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCTGGCGGTATTTGTAGTTGTAAACACTGTAGTAGTAGAGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23264</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>226330</contig_pos>
        <strand>+</strand>
        <context>GCAAATTGTT[C/T]CGAGAGTTTM</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAATCAACAGGAACCGAGAGTCGATGCTAGAAATAGAAGAGCAAATTGTT</left_flank>
        <right_flank>CGAGAGTTTCAAATAAAAAGAAAAAACGAATTAAAGCTAGAGCGAAAATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTCTGTGGGATTCCGTCTGGTTGCACTGCTGCCAGATCAGAAAGTCTACAACCAAATAATTCAAGCTTAAGAATGCCGCTTTTGCACTTACAAGTAGGGTTTCCCTCCTGTCACCAATTGGATATTATTTAAACTTGCTACGGCATCATTAGAGGCAACATACAGGCTTCCTCCTTCCTCCACATTATTTACCTGGTAGTTCGTACCATTCGTGTAATCTTTCAAAATCAAAACTACTGGGTCCGCAGCAACATTAGAAACAATAGTAGCAGAAAAAAGAAAAACGAGGATAGAGCAAGCCCGCATCACTGCTGAATGAAGGAATGTTTATGGGAAACGCCTTACACTCTCGCTAATTTAAGCCAATTTCAAGCTGCTGCTGATAACACAGGAGTCACAATTGTAATGATGTTCTGTGTCTTAATTCCTGACCATGACGAGGAGTGGAATCAACAGGAACCGAGAGTCGATGCTAGAAATAGAAGAGCAAATTGTTTCGAGAGTTTCAAATAAAAAGAAAAAACGAATTAAAGCTAGAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCTGGCGGTATTTGTAGTTGTAAACACTGTAGTAGTAGAGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAGTGGGCACCAATCCTCGAGTGAATCCATAATATTGACAGTAGAAAGCGCCAGGAATCATATCTGCTGAGTTGGTTACCAGTTTCGAAGCTTGCATATAAGTGGTCAGCAAGGCATGCTTCACAAAAGTGTCTTCGTTGTAGCTGAAAATTTCCGGAGAATAAAACTTTTTAGGTACGGTATATGTCGTTGTGGGACCTTCGGCCACGCGATTTTCTGAACCTAATGCTAGAAAGGAAACCAAATTATTTTGGGAGCATAAATAGGTCAACGTCGTTCCTTAAGTATAACGGTAGCGATAAGAAATGACTAGATGATATTTTTTAGTACTGAAAGTGTCT</canonical>
            <polymorphic>ATTTTCTGTGGGATTCCGTCTGGTTGCACTGCTGCCAGATCAGAAAGTCTACAACCAAATAATTCAAGCTTAAGAATGCCGCTTTTGCACTTACAAGTAGGGTTTCCCTCCTGTCACCAATTGGATATTATTTAAACTTGCTACGGCATCATTAGAGGCAACATACAGGCTTCCTCCTTCCTCCACATTATTTACCTGGTAGTTCGTACCATTCGTGTAATCTTTCAAAATCAAAACTACTGGGTCCGCAGCAACATTAGAAACAATAGTAGCAGAAAAAAGAAAAACGAGGATAGAGCAAGCCCGCATCACTGCTGAATGAAGGAATGTTTATGGGAAACGCCTTACACTCTCGCTAATTTAAGCCAATTTCAAGCTGCTGCTGATAACACAGGAGTCACAATTGTAATGATGTTCTGTGTCTTAATTCCTGACCATGACGAGGAGTGGAATCAACAGGAACCGAGAGTCGATGCTAGAAATAGAAGAGCAAATTGTTYCGAGAGTTTCAAATAAAAAGAAAAAACGAATTAAAGCTAGAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCTGGCGGTATTTGTAGTTGTAAACACTGTAGTAGTAGAGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAGTGGGCACCAATCCTCGAGTGAATCCATAATATTGACAGTAGAAAGCGCCAGGAATCATATCTGCTGAGTTGGTTACCAGTTTCGAAGCTTGCATATAAGTGGTCAGCAAGGCATGCTTCACAAAAGTGTCTTCGTTGTAGCTGAAAATTTCCGGAGAATAAAACTTTTTAGGTACGGTATATGTCGTTGTGGGACCTTCGGCCACGCGATTTTCTGAACCTAATGCTAGAAAGGAAACCAAATTATTTTGGGAGCATAAATAGGTCAACGTCGTTCCTTAAGTATAACGGTAGCGATAAGAAATGACTAGATGATATTTTTTAGTACTGAAAGTGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>471 255 102 74 68 30</canonical_bands>
                <polymorphic_bands>471 255 104 102 68</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>430 238 187 74 71</canonical_bands>
                <polymorphic_bands>430 238 187 145</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTCTGTGTCTTAATTCCTGAC</pcr_primer_p1>
		<pcr_primer_p2>CTACATCAACAACAACGACAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTTCTGTGTCTTAATTCCTGACCATGACGAGGAGTGGAATCAACAGGAACCGAGAGTCGATGCTAGAAATAGAAGAGCAAATTGTTTCGAGAGTTTCAAATAAAAAGAAAAAACGAATTAAAGCTAGAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCTGGCGGTATTTGTAGTTGTAAACACTGTAGTAGTAGAGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAG</canonical_amplicon>
		<polymorphic_amplicon>TGTTCTGTGTCTTAATTCCTGACCATGACGAGGAGTGGAATCAACAGGAACCGAGAGTCGATGCTAGAAATAGAAGAGCAAATTGTTYCGAGAGTTTCAAATAAAAAGAAAAAACGAATTAAAGCTAGAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCTGGCGGTATTTGTAGTTGTAAACACTGTAGTAGTAGAGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23265</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>226340</contig_pos>
        <strand>+</strand>
        <context>YCGAGAGTTT[A/C]AAATAAAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAACCGAGAGTCGATGCTAGAAATAGAAGAGCAAATTGTTTCGAGAGTTT</left_flank>
        <right_flank>AAATAAAAAGAAAAAACGAATTAAAGCTAGAGCGAAAATCATAATAATCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATTCCGTCTGGTTGCACTGCTGCCAGATCAGAAAGTCTACAACCAAATAATTCAAGCTTAAGAATGCCGCTTTTGCACTTACAAGTAGGGTTTCCCTCCTGTCACCAATTGGATATTATTTAAACTTGCTACGGCATCATTAGAGGCAACATACAGGCTTCCTCCTTCCTCCACATTATTTACCTGGTAGTTCGTACCATTCGTGTAATCTTTCAAAATCAAAACTACTGGGTCCGCAGCAACATTAGAAACAATAGTAGCAGAAAAAAGAAAAACGAGGATAGAGCAAGCCCGCATCACTGCTGAATGAAGGAATGTTTATGGGAAACGCCTTACACTCTCGCTAATTTAAGCCAATTTCAAGCTGCTGCTGATAACACAGGAGTCACAATTGTAATGATGTTCTGTGTCTTAATTCCTGACCATGACGAGGAGTGGAATCAACAGGAACCGAGAGTCGATGCTAGAAATAGAAGAGCAAATTGTTTCGAGAGTTTCAAATAAAAAGAAAAAACGAATTAAAGCTAGAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCTGGCGGTATTTGTAGTTGTAAACACTGTAGTAGTAGAGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAGTGGGCACCAATCCTCGAGTGAATCCATAATATTGACAGTAGAAAGCGCCAGGAATCATATCTGCTGAGTTGGTTACCAGTTTCGAAGCTTGCATATAAGTGGTCAGCAAGGCATGCTTCACAAAAGTGTCTTCGTTGTAGCTGAAAATTTCCGGAGAATAAAACTTTTTAGGTACGGTATATGTCGTTGTGGGACCTTCGGCCACGCGATTTTCTGAACCTAATGCTAGAAAGGAAACCAAATTATTTTGGGAGCATAAATAGGTCAACGTCGTTCCTTAAGTATAACGGTAGCGATAAGAAATGACTAGATGATATTTTTTAGTACTGAAAGTGTCTTGCAGTGACT</canonical>
            <polymorphic>GGATTCCGTCTGGTTGCACTGCTGCCAGATCAGAAAGTCTACAACCAAATAATTCAAGCTTAAGAATGCCGCTTTTGCACTTACAAGTAGGGTTTCCCTCCTGTCACCAATTGGATATTATTTAAACTTGCTACGGCATCATTAGAGGCAACATACAGGCTTCCTCCTTCCTCCACATTATTTACCTGGTAGTTCGTACCATTCGTGTAATCTTTCAAAATCAAAACTACTGGGTCCGCAGCAACATTAGAAACAATAGTAGCAGAAAAAAGAAAAACGAGGATAGAGCAAGCCCGCATCACTGCTGAATGAAGGAATGTTTATGGGAAACGCCTTACACTCTCGCTAATTTAAGCCAATTTCAAGCTGCTGCTGATAACACAGGAGTCACAATTGTAATGATGTTCTGTGTCTTAATTCCTGACCATGACGAGGAGTGGAATCAACAGGAACCGAGAGTCGATGCTAGAAATAGAAGAGCAAATTGTTTCGAGAGTTTMAAATAAAAAGAAAAAACGAATTAAAGCTAGAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCTGGCGGTATTTGTAGTTGTAAACACTGTAGTAGTAGAGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAGTGGGCACCAATCCTCGAGTGAATCCATAATATTGACAGTAGAAAGCGCCAGGAATCATATCTGCTGAGTTGGTTACCAGTTTCGAAGCTTGCATATAAGTGGTCAGCAAGGCATGCTTCACAAAAGTGTCTTCGTTGTAGCTGAAAATTTCCGGAGAATAAAACTTTTTAGGTACGGTATATGTCGTTGTGGGACCTTCGGCCACGCGATTTTCTGAACCTAATGCTAGAAAGGAAACCAAATTATTTTGGGAGCATAAATAGGTCAACGTCGTTCCTTAAGTATAACGGTAGCGATAAGAAATGACTAGATGATATTTTTTAGTACTGAAAGTGTCTTGCAGTGACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTCTGTGTCTTAATTCCTGAC</pcr_primer_p1>
		<pcr_primer_p2>CTACATCAACAACAACGACAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTTCTGTGTCTTAATTCCTGACCATGACGAGGAGTGGAATCAACAGGAACCGAGAGTCGATGCTAGAAATAGAAGAGCAAATTGTTTCGAGAGTTTCAAATAAAAAGAAAAAACGAATTAAAGCTAGAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCTGGCGGTATTTGTAGTTGTAAACACTGTAGTAGTAGAGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAG</canonical_amplicon>
		<polymorphic_amplicon>TGTTCTGTGTCTTAATTCCTGACCATGACGAGGAGTGGAATCAACAGGAACCGAGAGTCGATGCTAGAAATAGAAGAGCAAATTGTTTCGAGAGTTTMAAATAAAAAGAAAAAACGAATTAAAGCTAGAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCTGGCGGTATTTGTAGTTGTAAACACTGTAGTAGTAGAGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23266</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>226412</contig_pos>
        <strand>+</strand>
        <context>TTTCGAGATC[C/T]GGCGRTATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAGCTAGAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATC</left_flank>
        <right_flank>GGCGGTATTTGTAGTTGTAAACACTGTAGTAGTAGAGACGCTACTCGTGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGCACTTACAAGTAGGGTTTCCCTCCTGTCACCAATTGGATATTATTTAAACTTGCTACGGCATCATTAGAGGCAACATACAGGCTTCCTCCTTCCTCCACATTATTTACCTGGTAGTTCGTACCATTCGTGTAATCTTTCAAAATCAAAACTACTGGGTCCGCAGCAACATTAGAAACAATAGTAGCAGAAAAAAGAAAAACGAGGATAGAGCAAGCCCGCATCACTGCTGAATGAAGGAATGTTTATGGGAAACGCCTTACACTCTCGCTAATTTAAGCCAATTTCAAGCTGCTGCTGATAACACAGGAGTCACAATTGTAATGATGTTCTGTGTCTTAATTCCTGACCATGACGAGGAGTGGAATCAACAGGAACCGAGAGTCGATGCTAGAAATAGAAGAGCAAATTGTTTCGAGAGTTTCAAATAAAAAGAAAAAACGAATTAAAGCTAGAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCTGGCGGTATTTGTAGTTGTAAACACTGTAGTAGTAGAGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAGTGGGCACCAATCCTCGAGTGAATCCATAATATTGACAGTAGAAAGCGCCAGGAATCATATCTGCTGAGTTGGTTACCAGTTTCGAAGCTTGCATATAAGTGGTCAGCAAGGCATGCTTCACAAAAGTGTCTTCGTTGTAGCTGAAAATTTCCGGAGAATAAAACTTTTTAGGTACGGTATATGTCGTTGTGGGACCTTCGGCCACGCGATTTTCTGAACCTAATGCTAGAAAGGAAACCAAATTATTTTGGGAGCATAAATAGGTCAACGTCGTTCCTTAAGTATAACGGTAGCGATAAGAAATGACTAGATGATATTTTTTAGTACTGAAAGTGTCTTGCAGTGACTCAAACATCCAGAAATTTCAATTTTTGTTTCTCTGTTAACTGATGACCTAGTTCTGGAACCAGCCTGAATGTA</canonical>
            <polymorphic>TTTTGCACTTACAAGTAGGGTTTCCCTCCTGTCACCAATTGGATATTATTTAAACTTGCTACGGCATCATTAGAGGCAACATACAGGCTTCCTCCTTCCTCCACATTATTTACCTGGTAGTTCGTACCATTCGTGTAATCTTTCAAAATCAAAACTACTGGGTCCGCAGCAACATTAGAAACAATAGTAGCAGAAAAAAGAAAAACGAGGATAGAGCAAGCCCGCATCACTGCTGAATGAAGGAATGTTTATGGGAAACGCCTTACACTCTCGCTAATTTAAGCCAATTTCAAGCTGCTGCTGATAACACAGGAGTCACAATTGTAATGATGTTCTGTGTCTTAATTCCTGACCATGACGAGGAGTGGAATCAACAGGAACCGAGAGTCGATGCTAGAAATAGAAGAGCAAATTGTTTCGAGAGTTTCAAATAAAAAGAAAAAACGAATTAAAGCTAGAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCYGGCGGTATTTGTAGTTGTAAACACTGTAGTAGTAGAGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAGTGGGCACCAATCCTCGAGTGAATCCATAATATTGACAGTAGAAAGCGCCAGGAATCATATCTGCTGAGTTGGTTACCAGTTTCGAAGCTTGCATATAAGTGGTCAGCAAGGCATGCTTCACAAAAGTGTCTTCGTTGTAGCTGAAAATTTCCGGAGAATAAAACTTTTTAGGTACGGTATATGTCGTTGTGGGACCTTCGGCCACGCGATTTTCTGAACCTAATGCTAGAAAGGAAACCAAATTATTTTGGGAGCATAAATAGGTCAACGTCGTTCCTTAAGTATAACGGTAGCGATAAGAAATGACTAGATGATATTTTTTAGTACTGAAAGTGTCTTGCAGTGACTCAAACATCCAGAAATTTCAATTTTTGTTTCTCTGTTAACTGATGACCTAGTTCTGGAACCAGCCTGAATGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTCTGTGTCTTAATTCCTGAC</pcr_primer_p1>
		<pcr_primer_p2>CTACATCAACAACAACGACAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTTCTGTGTCTTAATTCCTGACCATGACGAGGAGTGGAATCAACAGGAACCGAGAGTCGATGCTAGAAATAGAAGAGCAAATTGTTTCGAGAGTTTCAAATAAAAAGAAAAAACGAATTAAAGCTAGAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCTGGCGGTATTTGTAGTTGTAAACACTGTAGTAGTAGAGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAG</canonical_amplicon>
		<polymorphic_amplicon>TGTTCTGTGTCTTAATTCCTGACCATGACGAGGAGTGGAATCAACAGGAACCGAGAGTCGATGCTAGAAATAGAAGAGCAAATTGTTTCGAGAGTTTCAAATAAAAAGAAAAAACGAATTAAAGCTAGAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCYGGCGGTATTTGTAGTTGTAAACACTGTAGTAGTAGAGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23267</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>226417</contig_pos>
        <strand>+</strand>
        <context>AGATCYGGCG[A/G]TATTTGTAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAGAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCTGGCG</left_flank>
        <right_flank>TATTTGTAGTTGTAAACACTGTAGTAGTAGAGACGCTACTCGTGGATTGT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACTTACAAGTAGGGTTTCCCTCCTGTCACCAATTGGATATTATTTAAACTTGCTACGGCATCATTAGAGGCAACATACAGGCTTCCTCCTTCCTCCACATTATTTACCTGGTAGTTCGTACCATTCGTGTAATCTTTCAAAATCAAAACTACTGGGTCCGCAGCAACATTAGAAACAATAGTAGCAGAAAAAAGAAAAACGAGGATAGAGCAAGCCCGCATCACTGCTGAATGAAGGAATGTTTATGGGAAACGCCTTACACTCTCGCTAATTTAAGCCAATTTCAAGCTGCTGCTGATAACACAGGAGTCACAATTGTAATGATGTTCTGTGTCTTAATTCCTGACCATGACGAGGAGTGGAATCAACAGGAACCGAGAGTCGATGCTAGAAATAGAAGAGCAAATTGTTTCGAGAGTTTCAAATAAAAAGAAAAAACGAATTAAAGCTAGAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCTGGCGGTATTTGTAGTTGTAAACACTGTAGTAGTAGAGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAGTGGGCACCAATCCTCGAGTGAATCCATAATATTGACAGTAGAAAGCGCCAGGAATCATATCTGCTGAGTTGGTTACCAGTTTCGAAGCTTGCATATAAGTGGTCAGCAAGGCATGCTTCACAAAAGTGTCTTCGTTGTAGCTGAAAATTTCCGGAGAATAAAACTTTTTAGGTACGGTATATGTCGTTGTGGGACCTTCGGCCACGCGATTTTCTGAACCTAATGCTAGAAAGGAAACCAAATTATTTTGGGAGCATAAATAGGTCAACGTCGTTCCTTAAGTATAACGGTAGCGATAAGAAATGACTAGATGATATTTTTTAGTACTGAAAGTGTCTTGCAGTGACTCAAACATCCAGAAATTTCAATTTTTGTTTCTCTGTTAACTGATGACCTAGTTCTGGAACCAGCCTGAATGTAACTTT</canonical>
            <polymorphic>CACTTACAAGTAGGGTTTCCCTCCTGTCACCAATTGGATATTATTTAAACTTGCTACGGCATCATTAGAGGCAACATACAGGCTTCCTCCTTCCTCCACATTATTTACCTGGTAGTTCGTACCATTCGTGTAATCTTTCAAAATCAAAACTACTGGGTCCGCAGCAACATTAGAAACAATAGTAGCAGAAAAAAGAAAAACGAGGATAGAGCAAGCCCGCATCACTGCTGAATGAAGGAATGTTTATGGGAAACGCCTTACACTCTCGCTAATTTAAGCCAATTTCAAGCTGCTGCTGATAACACAGGAGTCACAATTGTAATGATGTTCTGTGTCTTAATTCCTGACCATGACGAGGAGTGGAATCAACAGGAACCGAGAGTCGATGCTAGAAATAGAAGAGCAAATTGTTTCGAGAGTTTCAAATAAAAAGAAAAAACGAATTAAAGCTAGAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCTGGCGRTATTTGTAGTTGTAAACACTGTAGTAGTAGAGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAGTGGGCACCAATCCTCGAGTGAATCCATAATATTGACAGTAGAAAGCGCCAGGAATCATATCTGCTGAGTTGGTTACCAGTTTCGAAGCTTGCATATAAGTGGTCAGCAAGGCATGCTTCACAAAAGTGTCTTCGTTGTAGCTGAAAATTTCCGGAGAATAAAACTTTTTAGGTACGGTATATGTCGTTGTGGGACCTTCGGCCACGCGATTTTCTGAACCTAATGCTAGAAAGGAAACCAAATTATTTTGGGAGCATAAATAGGTCAACGTCGTTCCTTAAGTATAACGGTAGCGATAAGAAATGACTAGATGATATTTTTTAGTACTGAAAGTGTCTTGCAGTGACTCAAACATCCAGAAATTTCAATTTTTGTTTCTCTGTTAACTGATGACCTAGTTCTGGAACCAGCCTGAATGTAACTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>504 279 159 58</canonical_bands>
                <polymorphic_bands>783 159 58</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTCTGTGTCTTAATTCCTGAC</pcr_primer_p1>
		<pcr_primer_p2>CTACATCAACAACAACGACAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTTCTGTGTCTTAATTCCTGACCATGACGAGGAGTGGAATCAACAGGAACCGAGAGTCGATGCTAGAAATAGAAGAGCAAATTGTTTCGAGAGTTTCAAATAAAAAGAAAAAACGAATTAAAGCTAGAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCTGGCGGTATTTGTAGTTGTAAACACTGTAGTAGTAGAGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAG</canonical_amplicon>
		<polymorphic_amplicon>TGTTCTGTGTCTTAATTCCTGACCATGACGAGGAGTGGAATCAACAGGAACCGAGAGTCGATGCTAGAAATAGAAGAGCAAATTGTTTCGAGAGTTTCAAATAAAAAGAAAAAACGAATTAAAGCTAGAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCTGGCGRTATTTGTAGTTGTAAACACTGTAGTAGTAGAGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23268</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>226447</contig_pos>
        <strand>+</strand>
        <context>TGTAGTAGTA[A/G]AGACGCTACT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATATTTCGAGATCTGGCGGTATTTGTAGTTGTAAACACTGTAGTAGTA</left_flank>
        <right_flank>AGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAGTGGGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTGGATATTATTTAAACTTGCTACGGCATCATTAGAGGCAACATACAGGCTTCCTCCTTCCTCCACATTATTTACCTGGTAGTTCGTACCATTCGTGTAATCTTTCAAAATCAAAACTACTGGGTCCGCAGCAACATTAGAAACAATAGTAGCAGAAAAAAGAAAAACGAGGATAGAGCAAGCCCGCATCACTGCTGAATGAAGGAATGTTTATGGGAAACGCCTTACACTCTCGCTAATTTAAGCCAATTTCAAGCTGCTGCTGATAACACAGGAGTCACAATTGTAATGATGTTCTGTGTCTTAATTCCTGACCATGACGAGGAGTGGAATCAACAGGAACCGAGAGTCGATGCTAGAAATAGAAGAGCAAATTGTTTCGAGAGTTTCAAATAAAAAGAAAAAACGAATTAAAGCTAGAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCTGGCGGTATTTGTAGTTGTAAACACTGTAGTAGTAGAGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAGTGGGCACCAATCCTCGAGTGAATCCATAATATTGACAGTAGAAAGCGCCAGGAATCATATCTGCTGAGTTGGTTACCAGTTTCGAAGCTTGCATATAAGTGGTCAGCAAGGCATGCTTCACAAAAGTGTCTTCGTTGTAGCTGAAAATTTCCGGAGAATAAAACTTTTTAGGTACGGTATATGTCGTTGTGGGACCTTCGGCCACGCGATTTTCTGAACCTAATGCTAGAAAGGAAACCAAATTATTTTGGGAGCATAAATAGGTCAACGTCGTTCCTTAAGTATAACGGTAGCGATAAGAAATGACTAGATGATATTTTTTAGTACTGAAAGTGTCTTGCAGTGACTCAAACATCCAGAAATTTCAATTTTTGTTTCTCTGTTAACTGATGACCTAGTTCTGGAACCAGCCTGAATGTAACTTTGAAAAAAGACTCAAGATAGTTTGAAATGTG</canonical>
            <polymorphic>CAATTGGATATTATTTAAACTTGCTACGGCATCATTAGAGGCAACATACAGGCTTCCTCCTTCCTCCACATTATTTACCTGGTAGTTCGTACCATTCGTGTAATCTTTCAAAATCAAAACTACTGGGTCCGCAGCAACATTAGAAACAATAGTAGCAGAAAAAAGAAAAACGAGGATAGAGCAAGCCCGCATCACTGCTGAATGAAGGAATGTTTATGGGAAACGCCTTACACTCTCGCTAATTTAAGCCAATTTCAAGCTGCTGCTGATAACACAGGAGTCACAATTGTAATGATGTTCTGTGTCTTAATTCCTGACCATGACGAGGAGTGGAATCAACAGGAACCGAGAGTCGATGCTAGAAATAGAAGAGCAAATTGTTTCGAGAGTTTCAAATAAAAAGAAAAAACGAATTAAAGCTAGAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCTGGCGGTATTTGTAGTTGTAAACACTGTAGTAGTARAGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAGTGGGCACCAATCCTCGAGTGAATCCATAATATTGACAGTAGAAAGCGCCAGGAATCATATCTGCTGAGTTGGTTACCAGTTTCGAAGCTTGCATATAAGTGGTCAGCAAGGCATGCTTCACAAAAGTGTCTTCGTTGTAGCTGAAAATTTCCGGAGAATAAAACTTTTTAGGTACGGTATATGTCGTTGTGGGACCTTCGGCCACGCGATTTTCTGAACCTAATGCTAGAAAGGAAACCAAATTATTTTGGGAGCATAAATAGGTCAACGTCGTTCCTTAAGTATAACGGTAGCGATAAGAAATGACTAGATGATATTTTTTAGTACTGAAAGTGTCTTGCAGTGACTCAAACATCCAGAAATTTCAATTTTTGTTTCTCTGTTAACTGATGACCTAGTTCTGGAACCAGCCTGAATGTAACTTTGAAAAAAGACTCAAGATAGTTTGAAATGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCGAAAATCATAATAATCAAG</pcr_primer_p1>
		<pcr_primer_p2>AACGAAGACACTTTTGTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>GAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCTGGCGGTATTTGTAGTTGTAAACACTGTAGTAGTAGAGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAGTGGGCACCAATCCTCGAGTGAATCCATAATATTGACAGTAGAAAGCGCCAGGAATCATATCTGCTGAGTTGGTTACCAGTTTCGAAGCTTGCATATAAGTGGTCAGCAAGGCATGCTTCACAAAAGTGTCTTCGTT</canonical_amplicon>
		<polymorphic_amplicon>GAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCTGGCGGTATTTGTAGTTGTAAACACTGTAGTAGTARAGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAGTGGGCACCAATCCTCGAGTGAATCCATAATATTGACAGTAGAAAGCGCCAGGAATCATATCTGCTGAGTTGGTTACCAGTTTCGAAGCTTGCATATAAGTGGTCAGCAAGGCATGCTTCACAAAAGTGTCTTCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23269</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>226564</contig_pos>
        <strand>+</strand>
        <context>TGCTGAGTTG[A/G]TTACCAGTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCCATAATATTGACAGTAGAAAGCGCCAGGAATCATATCTGCTGAGTTG</left_flank>
        <right_flank>TTACCAGTTTCGAAGCTTGCATATAAGTGGTCAGCAAGGCATGCTTCACA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTACTGGGTCCGCAGCAACATTAGAAACAATAGTAGCAGAAAAAAGAAAAACGAGGATAGAGCAAGCCCGCATCACTGCTGAATGAAGGAATGTTTATGGGAAACGCCTTACACTCTCGCTAATTTAAGCCAATTTCAAGCTGCTGCTGATAACACAGGAGTCACAATTGTAATGATGTTCTGTGTCTTAATTCCTGACCATGACGAGGAGTGGAATCAACAGGAACCGAGAGTCGATGCTAGAAATAGAAGAGCAAATTGTTTCGAGAGTTTCAAATAAAAAGAAAAAACGAATTAAAGCTAGAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCTGGCGGTATTTGTAGTTGTAAACACTGTAGTAGTAGAGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAGTGGGCACCAATCCTCGAGTGAATCCATAATATTGACAGTAGAAAGCGCCAGGAATCATATCTGCTGAGTTGGTTACCAGTTTCGAAGCTTGCATATAAGTGGTCAGCAAGGCATGCTTCACAAAAGTGTCTTCGTTGTAGCTGAAAATTTCCGGAGAATAAAACTTTTTAGGTACGGTATATGTCGTTGTGGGACCTTCGGCCACGCGATTTTCTGAACCTAATGCTAGAAAGGAAACCAAATTATTTTGGGAGCATAAATAGGTCAACGTCGTTCCTTAAGTATAACGGTAGCGATAAGAAATGACTAGATGATATTTTTTAGTACTGAAAGTGTCTTGCAGTGACTCAAACATCCAGAAATTTCAATTTTTGTTTCTCTGTTAACTGATGACCTAGTTCTGGAACCAGCCTGAATGTAACTTTGAAAAAAGACTCAAGATAGTTTGAAATGTGAAACATCAGAGCACATTACAGATTGCGATGACAGAAGACGGGTCCAGATCGGTTAACCACTACCCTACAGTTGACGAGATTCTCAATGTCGAGTCACAACAAAGATGCAGTGTATGT</canonical>
            <polymorphic>AACTACTGGGTCCGCAGCAACATTAGAAACAATAGTAGCAGAAAAAAGAAAAACGAGGATAGAGCAAGCCCGCATCACTGCTGAATGAAGGAATGTTTATGGGAAACGCCTTACACTCTCGCTAATTTAAGCCAATTTCAAGCTGCTGCTGATAACACAGGAGTCACAATTGTAATGATGTTCTGTGTCTTAATTCCTGACCATGACGAGGAGTGGAATCAACAGGAACCGAGAGTCGATGCTAGAAATAGAAGAGCAAATTGTTTCGAGAGTTTCAAATAAAAAGAAAAAACGAATTAAAGCTAGAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCTGGCGGTATTTGTAGTTGTAAACACTGTAGTAGTAGAGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAGTGGGCACCAATCCTCGAGTGAATCCATAATATTGACAGTAGAAAGCGCCAGGAATCATATCTGCTGAGTTGRTTACCAGTTTCGAAGCTTGCATATAAGTGGTCAGCAAGGCATGCTTCACAAAAGTGTCTTCGTTGTAGCTGAAAATTTCCGGAGAATAAAACTTTTTAGGTACGGTATATGTCGTTGTGGGACCTTCGGCCACGCGATTTTCTGAACCTAATGCTAGAAAGGAAACCAAATTATTTTGGGAGCATAAATAGGTCAACGTCGTTCCTTAAGTATAACGGTAGCGATAAGAAATGACTAGATGATATTTTTTAGTACTGAAAGTGTCTTGCAGTGACTCAAACATCCAGAAATTTCAATTTTTGTTTCTCTGTTAACTGATGACCTAGTTCTGGAACCAGCCTGAATGTAACTTTGAAAAAAGACTCAAGATAGTTTGAAATGTGAAACATCAGAGCACATTACAGATTGCGATGACAGAAGACGGGTCCAGATCGGTTAACCACTACCCTACAGTTGACGAGATTCTCAATGTCGAGTCACAACAAAGATGCAGTGTATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGTNACC</site>
                <isoschizomers>
                    <enzyme>BstEII</enzyme>
                    <enzyme>BstPI</enzyme>
                    <enzyme>Eco91I</enzyme>
                    <enzyme>EcoO65I</enzyme>
                    <enzyme>PspEI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>337 271 162 130 75 25</canonical_bands>
                <polymorphic_bands>608 162 130 75 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCTCGAGTGAATCCATAATA</pcr_primer_p1>
		<pcr_primer_p2>CAAAATAATTTGGTTTCCTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATCCTCGAGTGAATCCATAATATTGACAGTAGAAAGCGCCAGGAATCATATCTGCTGAGTTGGTTACCAGTTTCGAAGCTTGCATATAAGTGGTCAGCAAGGCATGCTTCACAAAAGTGTCTTCGTTGTAGCTGAAAATTTCCGGAGAATAAAACTTTTTAGGTACGGTATATGTCGTTGTGGGACCTTCGGCCACGCGATTTTCTGAACCTAATGCTAGAAAGGAAACCAAATTATTTTG</canonical_amplicon>
		<polymorphic_amplicon>ATCCTCGAGTGAATCCATAATATTGACAGTAGAAAGCGCCAGGAATCATATCTGCTGAGTTGRTTACCAGTTTCGAAGCTTGCATATAAGTGGTCAGCAAGGCATGCTTCACAAAAGTGTCTTCGTTGTAGCTGAAAATTTCCGGAGAATAAAACTTTTTAGGTACGGTATATGTCGTTGTGGGACCTTCGGCCACGCGATTTTCTGAACCTAATGCTAGAAAGGAAACCAAATTATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23270</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>226629</contig_pos>
        <strand>+</strand>
        <context>TGTCTTCGTT[A/G]TAGCTGAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTTGCATATAAGTGGTCAGCAAGGCATGCTTCACAAAAGTGTCTTCGTT</left_flank>
        <right_flank>TAGCTGAAAATTTCCGGAGAATAAAACTTTTTAGGTACGGTATATGTCGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCCCGCATCACTGCTGAATGAAGGAATGTTTATGGGAAACGCCTTACACTCTCGCTAATTTAAGCCAATTTCAAGCTGCTGCTGATAACACAGGAGTCACAATTGTAATGATGTTCTGTGTCTTAATTCCTGACCATGACGAGGAGTGGAATCAACAGGAACCGAGAGTCGATGCTAGAAATAGAAGAGCAAATTGTTTCGAGAGTTTCAAATAAAAAGAAAAAACGAATTAAAGCTAGAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCTGGCGGTATTTGTAGTTGTAAACACTGTAGTAGTAGAGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAGTGGGCACCAATCCTCGAGTGAATCCATAATATTGACAGTAGAAAGCGCCAGGAATCATATCTGCTGAGTTGGTTACCAGTTTCGAAGCTTGCATATAAGTGGTCAGCAAGGCATGCTTCACAAAAGTGTCTTCGTTGTAGCTGAAAATTTCCGGAGAATAAAACTTTTTAGGTACGGTATATGTCGTTGTGGGACCTTCGGCCACGCGATTTTCTGAACCTAATGCTAGAAAGGAAACCAAATTATTTTGGGAGCATAAATAGGTCAACGTCGTTCCTTAAGTATAACGGTAGCGATAAGAAATGACTAGATGATATTTTTTAGTACTGAAAGTGTCTTGCAGTGACTCAAACATCCAGAAATTTCAATTTTTGTTTCTCTGTTAACTGATGACCTAGTTCTGGAACCAGCCTGAATGTAACTTTGAAAAAAGACTCAAGATAGTTTGAAATGTGAAACATCAGAGCACATTACAGATTGCGATGACAGAAGACGGGTCCAGATCGGTTAACCACTACCCTACAGTTGACGAGATTCTCAATGTCGAGTCACAACAAAGATGCAGTGTATGTGGACGTGTGTTCCAGAATTCGTCAGCTTGTCGATTCCACGAATTGAAGATTCACTCGAAAACGGA</canonical>
            <polymorphic>AAGCCCGCATCACTGCTGAATGAAGGAATGTTTATGGGAAACGCCTTACACTCTCGCTAATTTAAGCCAATTTCAAGCTGCTGCTGATAACACAGGAGTCACAATTGTAATGATGTTCTGTGTCTTAATTCCTGACCATGACGAGGAGTGGAATCAACAGGAACCGAGAGTCGATGCTAGAAATAGAAGAGCAAATTGTTTCGAGAGTTTCAAATAAAAAGAAAAAACGAATTAAAGCTAGAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCTGGCGGTATTTGTAGTTGTAAACACTGTAGTAGTAGAGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAGTGGGCACCAATCCTCGAGTGAATCCATAATATTGACAGTAGAAAGCGCCAGGAATCATATCTGCTGAGTTGGTTACCAGTTTCGAAGCTTGCATATAAGTGGTCAGCAAGGCATGCTTCACAAAAGTGTCTTCGTTRTAGCTGAAAATTTCCGGAGAATAAAACTTTTTAGGTACGGTATATGTCGTTGTGGGACCTTCGGCCACGCGATTTTCTGAACCTAATGCTAGAAAGGAAACCAAATTATTTTGGGAGCATAAATAGGTCAACGTCGTTCCTTAAGTATAACGGTAGCGATAAGAAATGACTAGATGATATTTTTTAGTACTGAAAGTGTCTTGCAGTGACTCAAACATCCAGAAATTTCAATTTTTGTTTCTCTGTTAACTGATGACCTAGTTCTGGAACCAGCCTGAATGTAACTTTGAAAAAAGACTCAAGATAGTTTGAAATGTGAAACATCAGAGCACATTACAGATTGCGATGACAGAAGACGGGTCCAGATCGGTTAACCACTACCCTACAGTTGACGAGATTCTCAATGTCGAGTCACAACAAAGATGCAGTGTATGTGGACGTGTGTTCCAGAATTCGTCAGCTTGTCGATTCCACGAATTGAAGATTCACTCGAAAACGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCTCGAGTGAATCCATAATA</pcr_primer_p1>
		<pcr_primer_p2>CAAAATAATTTGGTTTCCTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATCCTCGAGTGAATCCATAATATTGACAGTAGAAAGCGCCAGGAATCATATCTGCTGAGTTGGTTACCAGTTTCGAAGCTTGCATATAAGTGGTCAGCAAGGCATGCTTCACAAAAGTGTCTTCGTTGTAGCTGAAAATTTCCGGAGAATAAAACTTTTTAGGTACGGTATATGTCGTTGTGGGACCTTCGGCCACGCGATTTTCTGAACCTAATGCTAGAAAGGAAACCAAATTATTTTG</canonical_amplicon>
		<polymorphic_amplicon>ATCCTCGAGTGAATCCATAATATTGACAGTAGAAAGCGCCAGGAATCATATCTGCTGAGTTGGTTACCAGTTTCGAAGCTTGCATATAAGTGGTCAGCAAGGCATGCTTCACAAAAGTGTCTTCGTTRTAGCTGAAAATTTCCGGAGAATAAAACTTTTTAGGTACGGTATATGTCGTTGTGGGACCTTCGGCCACGCGATTTTCTGAACCTAATGCTAGAAAGGAAACCAAATTATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23271</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>226718</contig_pos>
        <strand>+</strand>
        <context>GAACCTAATG[C/T]TAGAAAGGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTATATGTCGTTGTGGGACCTTCGGCCACGCGATTTTCTGAACCTAATG</left_flank>
        <right_flank>TAGAAAGGAAACCAAATTATTTTGGGAGCATAAATAGGTCAACGTCGTTC</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACAGGAGTCACAATTGTAATGATGTTCTGTGTCTTAATTCCTGACCATGACGAGGAGTGGAATCAACAGGAACCGAGAGTCGATGCTAGAAATAGAAGAGCAAATTGTTTCGAGAGTTTCAAATAAAAAGAAAAAACGAATTAAAGCTAGAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCTGGCGGTATTTGTAGTTGTAAACACTGTAGTAGTAGAGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAGTGGGCACCAATCCTCGAGTGAATCCATAATATTGACAGTAGAAAGCGCCAGGAATCATATCTGCTGAGTTGGTTACCAGTTTCGAAGCTTGCATATAAGTGGTCAGCAAGGCATGCTTCACAAAAGTGTCTTCGTTGTAGCTGAAAATTTCCGGAGAATAAAACTTTTTAGGTACGGTATATGTCGTTGTGGGACCTTCGGCCACGCGATTTTCTGAACCTAATGCTAGAAAGGAAACCAAATTATTTTGGGAGCATAAATAGGTCAACGTCGTTCCTTAAGTATAACGGTAGCGATAAGAAATGACTAGATGATATTTTTTAGTACTGAAAGTGTCTTGCAGTGACTCAAACATCCAGAAATTTCAATTTTTGTTTCTCTGTTAACTGATGACCTAGTTCTGGAACCAGCCTGAATGTAACTTTGAAAAAAGACTCAAGATAGTTTGAAATGTGAAACATCAGAGCACATTACAGATTGCGATGACAGAAGACGGGTCCAGATCGGTTAACCACTACCCTACAGTTGACGAGATTCTCAATGTCGAGTCACAACAAAGATGCAGTGTATGTGGACGTGTGTTCCAGAATTCGTCAGCTTGTCGATTCCACGAATTGAAGATTCACTCGAAAACGGATGCTGCTGGCCCGAATGAGGCGCGGCTTTTGAAACGAACTTCTGATGAACAACGTAAGATACCTACTCAGCGACTAGTTAAATTTTAAA</canonical>
            <polymorphic>ACACAGGAGTCACAATTGTAATGATGTTCTGTGTCTTAATTCCTGACCATGACGAGGAGTGGAATCAACAGGAACCGAGAGTCGATGCTAGAAATAGAAGAGCAAATTGTTTCGAGAGTTTCAAATAAAAAGAAAAAACGAATTAAAGCTAGAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCTGGCGGTATTTGTAGTTGTAAACACTGTAGTAGTAGAGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAGTGGGCACCAATCCTCGAGTGAATCCATAATATTGACAGTAGAAAGCGCCAGGAATCATATCTGCTGAGTTGGTTACCAGTTTCGAAGCTTGCATATAAGTGGTCAGCAAGGCATGCTTCACAAAAGTGTCTTCGTTGTAGCTGAAAATTTCCGGAGAATAAAACTTTTTAGGTACGGTATATGTCGTTGTGGGACCTTCGGCCACGCGATTTTCTGAACCTAATGYTAGAAAGGAAACCAAATTATTTTGGGAGCATAAATAGGTCAACGTCGTTCCTTAAGTATAACGGTAGCGATAAGAAATGACTAGATGATATTTTTTAGTACTGAAAGTGTCTTGCAGTGACTCAAACATCCAGAAATTTCAATTTTTGTTTCTCTGTTAACTGATGACCTAGTTCTGGAACCAGCCTGAATGTAACTTTGAAAAAAGACTCAAGATAGTTTGAAATGTGAAACATCAGAGCACATTACAGATTGCGATGACAGAAGACGGGTCCAGATCGGTTAACCACTACCCTACAGTTGACGAGATTCTCAATGTCGAGTCACAACAAAGATGCAGTGTATGTGGACGTGTGTTCCAGAATTCGTCAGCTTGTCGATTCCACGAATTGAAGATTCACTCGAAAACGGATGCTGCTGGCCCGAATGAGGCGCGGCTTTTGAAACGAACTTCTGATGAACAACGTAAGATACCTACTCAGCGACTAGTTAAATTTTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>351 316 88 88 81 61 15</canonical_bands>
                <polymorphic_bands>432 316 88 88 61 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGGAATCATATCTGCTGAGTT</pcr_primer_p1>
		<pcr_primer_p2>TACCGTTATACTTAAGGAACGAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAGGAATCATATCTGCTGAGTTGGTTACCAGTTTCGAAGCTTGCATATAAGTGGTCAGCAAGGCATGCTTCACAAAAGTGTCTTCGTTGTAGCTGAAAATTTCCGGAGAATAAAACTTTTTAGGTACGGTATATGTCGTTGTGGGACCTTCGGCCACGCGATTTTCTGAACCTAATGCTAGAAAGGAAACCAAATTATTTTGGGAGCATAAATAGGTCAACGTCGTTCCTTAAGTATAACGGTA</canonical_amplicon>
		<polymorphic_amplicon>CAGGAATCATATCTGCTGAGTTGGTTACCAGTTTCGAAGCTTGCATATAAGTGGTCAGCAAGGCATGCTTCACAAAAGTGTCTTCGTTGTAGCTGAAAATTTCCGGAGAATAAAACTTTTTAGGTACGGTATATGTCGTTGTGGGACCTTCGGCCACGCGATTTTCTGAACCTAATGYTAGAAAGGAAACCAAATTATTTTGGGAGCATAAATAGGTCAACGTCGTTCCTTAAGTATAACGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23272</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>230041</contig_pos>
        <strand>+</strand>
        <context>CTTCGTTCGC[C/T]GCTCAGTACG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCAGGATGTTCCAATGTATGCAACTGCTTCCACGTCGACTTCGTTCGC</left_flank>
        <right_flank>GCTCAGTACGATGAGCAGGAAGTGACGTTTTGCGAGCGGGGAACGATGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACTGGTAATATATTTGTGAAATTATGATAAACAATTTATCAGTTGACAACTTTTTGATATCTTACATAGGAACCTAGATAAATTGGCTCAAAGTTAAAAGTTAGAGACCCTTCTATTACAGGTTTTATAAATTCAAATAAAATGATAATTGGGTTAATGAACAGGAATTGAATTTAATCTATTCTTACAGATACGGATAACAACTTCCCAAAAGCGAAGAAGCTCAAAAAGCACGAATCCGCAACAAGAACATTTTTGGAAGAGGCTCTAGGATCAAGCTCTATGGTCCCGATTATCTTACTTGTGCCACCCGAAGACGTGCAGAAGGTTGTAGAATCCGTTCAGAATAACTTCAAAGCCACTCTGGTCGACAATTTCACGGAGGAGCCAGAATCTGGGAATTTCGCAGAAGTCGCAACTCAAGTGCAGATGCCTTTTAATGTACAGAATCAGGATGTTCCAATGTATGCAACTGCTTCCACGTCGACTTCGTTCGCCGCTCAGTACGATGAGCAGGAAGTGACGTTTTGCGAGCGGGGAACGATGATGACCGAGGAGGAGCCGTTGCGATACTTTAGTCCGCCGTATGGAGCGGAATTTGGGGATTTGAATCCGCATGAAAGGTGAGGTAGAAGACTAATCAAGATGCCGTAAAACCTGCGATAGAATGACCCGCACACTGTGAAGTTTGAGCTCAATTATCTCGGCTGCCATAAGAGATATCAAAAATGTGTCAACTGATAAAATGTGATAAAATGTTTGGGACATTATGATAAGCAATTTATCAGTTGACTACTTTTTCATATCTTTTACAGAAACGGAAATAAATTGTCTCAAAGATAAAGTCAAGGGGCATTTCTATTACAGGTTTTACGGTAGTTTTGTCAAAAAAAATATTTTAGTGGACCTCAACAATTCGACTACTCTTCACAACCATCTACATCCCAACCTCAAACTAGGAACCGTGGAACGATGTTTGAAAAGTAACCACCTTCCTC</canonical>
            <polymorphic>CAACTGGTAATATATTTGTGAAATTATGATAAACAATTTATCAGTTGACAACTTTTTGATATCTTACATAGGAACCTAGATAAATTGGCTCAAAGTTAAAAGTTAGAGACCCTTCTATTACAGGTTTTATAAATTCAAATAAAATGATAATTGGGTTAATGAACAGGAATTGAATTTAATCTATTCTTACAGATACGGATAACAACTTCCCAAAAGCGAAGAAGCTCAAAAAGCACGAATCCGCAACAAGAACATTTTTGGAAGAGGCTCTAGGATCAAGCTCTATGGTCCCGATTATCTTACTTGTGCCACCCGAAGACGTGCAGAAGGTTGTAGAATCCGTTCAGAATAACTTCAAAGCCACTCTGGTCGACAATTTCACGGAGGAGCCAGAATCTGGGAATTTCGCAGAAGTCGCAACTCAAGTGCAGATGCCTTTTAATGTACAGAATCAGGATGTTCCAATGTATGCAACTGCTTCCACGTCGACTTCGTTCGCYGCTCAGTACGATGAGCAGGAAGTGACGTTTTGCGAGCGGGGAACGATGATGACCGAGGAGGAGCCGTTGCGATACTTTAGTCCGCCGTATGGAGCGGAATTTGGGGATTTGAATCCGCATGAAAGGTGAGGTAGAAGACTAATCAAGATGCCGTAAAACCTGCGATAGAATGACCCGCACACTGTGAAGTTTGAGCTCAATTATCTCGGCTGCCATAAGAGATATCAAAAATGTGTCAACTGATAAAATGTGATAAAATGTTTGGGACATTATGATAAGCAATTTATCAGTTGACTACTTTTTCATATCTTTTACAGAAACGGAAATAAATTGTCTCAAAGATAAAGTCAAGGGGCATTTCTATTACAGGTTTTACGGTAGTTTTGTCAAAAAAAATATTTTAGTGGACCTCAACAATTCGACTACTCTTCACAACCATCTACATCCCAACCTCAAACTAGGAACCGTGGAACGATGTTTGAAAAGTAACCACCTTCCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>325 258 241 83 60 33</canonical_bands>
                <polymorphic_bands>341 325 241 60 33</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAGAATAACTTCAAAGCCACT</pcr_primer_p1>
		<pcr_primer_p2>CATACGGCGGACTAAAGTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCAGAATAACTTCAAAGCCACTCTGGTCGACAATTTCACGGAGGAGCCAGAATCTGGGAATTTCGCAGAAGTCGCAACTCAAGTGCAGATGCCTTTTAATGTACAGAATCAGGATGTTCCAATGTATGCAACTGCTTCCACGTCGACTTCGTTCGCCGCTCAGTACGATGAGCAGGAAGTGACGTTTTGCGAGCGGGGAACGATGATGACCGAGGAGGAGCCGTTGCGATACTTTAGTCCGCCGTATG</canonical_amplicon>
		<polymorphic_amplicon>TCAGAATAACTTCAAAGCCACTCTGGTCGACAATTTCACGGAGGAGCCAGAATCTGGGAATTTCGCAGAAGTCGCAACTCAAGTGCAGATGCCTTTTAATGTACAGAATCAGGATGTTCCAATGTATGCAACTGCTTCCACGTCGACTTCGTTCGCYGCTCAGTACGATGAGCAGGAAGTGACGTTTTGCGAGCGGGGAACGATGATGACCGAGGAGGAGCCGTTGCGATACTTTAGTCCGCCGTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23273</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>229937</contig_pos>
        <strand>+</strand>
        <context>GGAGCCAGAA[C/T]CTGGGAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAATAACTTCAAAGCCACTCTGGTCGACAATTTCACGGAGGAGCCAGAA</left_flank>
        <right_flank>CTGGGAATTTCGCAGAAGTCGCAACTCAAGTGCAGATGCCTTTTAATGTA</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTCGAGCTAATTTATCCCCTATCCATGTCTACCCGGGCCACTCTATCCTTGCTCTTTGACCTCAAGTATCTCAATTTCTAGAAGACATAACAAAGATGTGTCAACTGGTAATATATTTGTGAAATTATGATAAACAATTTATCAGTTGACAACTTTTTGATATCTTACATAGGAACCTAGATAAATTGGCTCAAAGTTAAAAGTTAGAGACCCTTCTATTACAGGTTTTATAAATTCAAATAAAATGATAATTGGGTTAATGAACAGGAATTGAATTTAATCTATTCTTACAGATACGGATAACAACTTCCCAAAAGCGAAGAAGCTCAAAAAGCACGAATCCGCAACAAGAACATTTTTGGAAGAGGCTCTAGGATCAAGCTCTATGGTCCCGATTATCTTACTTGTGCCACCCGAAGACGTGCAGAAGGTTGTAGAATCCGTTCAGAATAACTTCAAAGCCACTCTGGTCGACAATTTCACGGAGGAGCCAGAATCTGGGAATTTCGCAGAAGTCGCAACTCAAGTGCAGATGCCTTTTAATGTACAGAATCAGGATGTTCCAATGTATGCAACTGCTTCCACGTCGACTTCGTTCGCCGCTCAGTACGATGAGCAGGAAGTGACGTTTTGCGAGCGGGGAACGATGATGACCGAGGAGGAGCCGTTGCGATACTTTAGTCCGCCGTATGGAGCGGAATTTGGGGATTTGAATCCGCATGAAAGGTGAGGTAGAAGACTAATCAAGATGCCGTAAAACCTGCGATAGAATGACCCGCACACTGTGAAGTTTGAGCTCAATTATCTCGGCTGCCATAAGAGATATCAAAAATGTGTCAACTGATAAAATGTGATAAAATGTTTGGGACATTATGATAAGCAATTTATCAGTTGACTACTTTTTCATATCTTTTACAGAAACGGAAATAAATTGTCTCAAAGATAAAGTCAAGGGGCATTTCTATTACAGGTTTTACGGTAGTTTTGTCAAAAAAAA</canonical>
            <polymorphic>AAATTCGAGCTAATTTATCCCCTATCCATGTCTACCCGGGCCACTCTATCCTTGCTCTTTGACCTCAAGTATCTCAATTTCTAGAAGACATAACAAAGATGTGTCAACTGGTAATATATTTGTGAAATTATGATAAACAATTTATCAGTTGACAACTTTTTGATATCTTACATAGGAACCTAGATAAATTGGCTCAAAGTTAAAAGTTAGAGACCCTTCTATTACAGGTTTTATAAATTCAAATAAAATGATAATTGGGTTAATGAACAGGAATTGAATTTAATCTATTCTTACAGATACGGATAACAACTTCCCAAAAGCGAAGAAGCTCAAAAAGCACGAATCCGCAACAAGAACATTTTTGGAAGAGGCTCTAGGATCAAGCTCTATGGTCCCGATTATCTTACTTGTGCCACCCGAAGACGTGCAGAAGGTTGTAGAATCCGTTCAGAATAACTTCAAAGCCACTCTGGTCGACAATTTCACGGAGGAGCCAGAAYCTGGGAATTTCGCAGAAGTCGCAACTCAAGTGCAGATGCCTTTTAATGTACAGAATCAGGATGTTCCAATGTATGCAACTGCTTCCACGTCGACTTCGTTCGCCGCTCAGTACGATGAGCAGGAAGTGACGTTTTGCGAGCGGGGAACGATGATGACCGAGGAGGAGCCGTTGCGATACTTTAGTCCGCCGTATGGAGCGGAATTTGGGGATTTGAATCCGCATGAAAGGTGAGGTAGAAGACTAATCAAGATGCCGTAAAACCTGCGATAGAATGACCCGCACACTGTGAAGTTTGAGCTCAATTATCTCGGCTGCCATAAGAGATATCAAAAATGTGTCAACTGATAAAATGTGATAAAATGTTTGGGACATTATGATAAGCAATTTATCAGTTGACTACTTTTTCATATCTTTTACAGAAACGGAAATAAATTGTCTCAAAGATAAAGTCAAGGGGCATTTCTATTACAGGTTTTACGGTAGTTTTGTCAAAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>341 285 162 99 57 56</canonical_bands>
                <polymorphic_bands>341 285 162 113 99</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>341 285 162 99 57 56</canonical_bands>
                <polymorphic_bands>341 285 162 113 99</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTATGGTCCCGATTATCTTAC</pcr_primer_p1>
		<pcr_primer_p2>CACTTCCTGCTCATCGTACT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CTCTATGGTCCCGATTATCTTACTTGTGCCACCCGAAGACGTGCAGAAGGTTGTAGAATCCGTTCAGAATAACTTCAAAGCCACTCTGGTCGACAATTTCACGGAGGAGCCAGAATCTGGGAATTTCGCAGAAGTCGCAACTCAAGTGCAGATGCCTTTTAATGTACAGAATCAGGATGTTCCAATGTATGCAACTGCTTCCACGTCGACTTCGTTCGCCGCTCAGTACGATGAGCAGGAAGTG</canonical_amplicon>
		<polymorphic_amplicon>CTCTATGGTCCCGATTATCTTACTTGTGCCACCCGAAGACGTGCAGAAGGTTGTAGAATCCGTTCAGAATAACTTCAAAGCCACTCTGGTCGACAATTTCACGGAGGAGCCAGAAYCTGGGAATTTCGCAGAAGTCGCAACTCAAGTGCAGATGCCTTTTAATGTACAGAATCAGGATGTTCCAATGTATGCAACTGCTTCCACGTCGACTTCGTTCGCCGCTCAGTACGATGAGCAGGAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23274</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>230540</contig_pos>
        <strand>+</strand>
        <context>ACCACCTTCC[C/T]CAATTACCGY</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACCTCAAACTAGGAACCGTGGAACGATGTTTGAAAAGTAACCACCTTCC</left_flank>
        <right_flank>CAATTACCGCATTTCTCAATCTTTCTCTCTTCCAGCGTAACCACTTGCAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCTCAGTACGATGAGCAGGAAGTGACGTTTTGCGAGCGGGGAACGATGATGACCGAGGAGGAGCCGTTGCGATACTTTAGTCCGCCGTATGGAGCGGAATTTGGGGATTTGAATCCGCATGAAAGGTGAGGTAGAAGACTAATCAAGATGCCGTAAAACCTGCGATAGAATGACCCGCACACTGTGAAGTTTGAGCTCAATTATCTCGGCTGCCATAAGAGATATCAAAAATGTGTCAACTGATAAAATGTGATAAAATGTTTGGGACATTATGATAAGCAATTTATCAGTTGACTACTTTTTCATATCTTTTACAGAAACGGAAATAAATTGTCTCAAAGATAAAGTCAAGGGGCATTTCTATTACAGGTTTTACGGTAGTTTTGTCAAAAAAAATATTTTAGTGGACCTCAACAATTCGACTACTCTTCACAACCATCTACATCCCAACCTCAAACTAGGAACCGTGGAACGATGTTTGAAAAGTAACCACCTTCCTCAATTACCGCATTTCTCAATCTTTCTCTCTTCCAGCGTAACCACTTGCAATACGGGCACTTCGATGATGGGCGAACAGTTTCCAGACTGCACACGCCACATATACACCCAGACTCCAAACTATCCGATGGGCTCCTCAGATCCATCCAACTGGTCGTGGTCCAATACCTGACAACTGACTTTTTGCTCTCTTTTCCACCCCCTCCTATTTCAACCAACTTGTCTTTCCTCATATTTTGCTTTATTGTTTTCATCTAATCATGCAGAAATCCATTAAGGATTTTCCCTCTTCTTCCCTTGCCCCAACTGCAAATCATGTAGAAATATGTTAGTTTTCATGTTCTGTATTTTTTTTTCCAAAACTTGTCACACTGCTCCCTCATAAAACGTTCTTCTTCTACTTCTTCTTCTCATTCCCAAATTCATTTGTGTGATATCATTTGTAAAACAAACTGCCCCCTCGTTTTTATTGCTTACAAATTGTGCTTCTGCCAGAAGAGT</canonical>
            <polymorphic>CGCTCAGTACGATGAGCAGGAAGTGACGTTTTGCGAGCGGGGAACGATGATGACCGAGGAGGAGCCGTTGCGATACTTTAGTCCGCCGTATGGAGCGGAATTTGGGGATTTGAATCCGCATGAAAGGTGAGGTAGAAGACTAATCAAGATGCCGTAAAACCTGCGATAGAATGACCCGCACACTGTGAAGTTTGAGCTCAATTATCTCGGCTGCCATAAGAGATATCAAAAATGTGTCAACTGATAAAATGTGATAAAATGTTTGGGACATTATGATAAGCAATTTATCAGTTGACTACTTTTTCATATCTTTTACAGAAACGGAAATAAATTGTCTCAAAGATAAAGTCAAGGGGCATTTCTATTACAGGTTTTACGGTAGTTTTGTCAAAAAAAATATTTTAGTGGACCTCAACAATTCGACTACTCTTCACAACCATCTACATCCCAACCTCAAACTAGGAACCGTGGAACGATGTTTGAAAAGTAACCACCTTCCYCAATTACCGCATTTCTCAATCTTTCTCTCTTCCAGCGTAACCACTTGCAATACGGGCACTTCGATGATGGGCGAACAGTTTCCAGACTGCACACGCCACATATACACCCAGACTCCAAACTATCCGATGGGCTCCTCAGATCCATCCAACTGGTCGTGGTCCAATACCTGACAACTGACTTTTTGCTCTCTTTTCCACCCCCTCCTATTTCAACCAACTTGTCTTTCCTCATATTTTGCTTTATTGTTTTCATCTAATCATGCAGAAATCCATTAAGGATTTTCCCTCTTCTTCCCTTGCCCCAACTGCAAATCATGTAGAAATATGTTAGTTTTCATGTTCTGTATTTTTTTTTCCAAAACTTGTCACACTGCTCCCTCATAAAACGTTCTTCTTCTACTTCTTCTTCTCATTCCCAAATTCATTTGTGTGATATCATTTGTAAAACAAACTGCCCCCTCGTTTTTATTGCTTACAAATTGTGCTTCTGCCAGAAGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTACATCCCAACCTCAAAC</pcr_primer_p1>
		<pcr_primer_p2>CAAAAAGTCAGTTGTCAGGTATT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATCTACATCCCAACCTCAAACTAGGAACCGTGGAACGATGTTTGAAAAGTAACCACCTTCCTCAATTACCGCATTTCTCAATCTTTCTCTCTTCCAGCGTAACCACTTGCAATACGGGCACTTCGATGATGGGCGAACAGTTTCCAGACTGCACACGCCACATATACACCCAGACTCCAAACTATCCGATGGGCTCCTCAGATCCATCCAACTGGTCGTGGTCCAATACCTGACAACTGACTTTTTG</canonical_amplicon>
		<polymorphic_amplicon>ATCTACATCCCAACCTCAAACTAGGAACCGTGGAACGATGTTTGAAAAGTAACCACCTTCCYCAATTACCGCATTTCTCAATCTTTCTCTCTTCCAGCGTAACCACTTGCAATACGGGCACTTCGATGATGGGCGAACAGTTTCCAGACTGCACACGCCACATATACACCCAGACTCCAAACTATCCGATGGGCTCCTCAGATCCATCCAACTGGTCGTGGTCCAATACCTGACAACTGACTTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23275</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>230550</contig_pos>
        <strand>+</strand>
        <context>YCAATTACCG[C/T]ATTTCTCAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGGAACCGTGGAACGATGTTTGAAAAGTAACCACCTTCCTCAATTACCG</left_flank>
        <right_flank>ATTTCTCAATCTTTCTCTCTTCCAGCGTAACCACTTGCAATACGGGCACT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGAGCAGGAAGTGACGTTTTGCGAGCGGGGAACGATGATGACCGAGGAGGAGCCGTTGCGATACTTTAGTCCGCCGTATGGAGCGGAATTTGGGGATTTGAATCCGCATGAAAGGTGAGGTAGAAGACTAATCAAGATGCCGTAAAACCTGCGATAGAATGACCCGCACACTGTGAAGTTTGAGCTCAATTATCTCGGCTGCCATAAGAGATATCAAAAATGTGTCAACTGATAAAATGTGATAAAATGTTTGGGACATTATGATAAGCAATTTATCAGTTGACTACTTTTTCATATCTTTTACAGAAACGGAAATAAATTGTCTCAAAGATAAAGTCAAGGGGCATTTCTATTACAGGTTTTACGGTAGTTTTGTCAAAAAAAATATTTTAGTGGACCTCAACAATTCGACTACTCTTCACAACCATCTACATCCCAACCTCAAACTAGGAACCGTGGAACGATGTTTGAAAAGTAACCACCTTCCTCAATTACCGCATTTCTCAATCTTTCTCTCTTCCAGCGTAACCACTTGCAATACGGGCACTTCGATGATGGGCGAACAGTTTCCAGACTGCACACGCCACATATACACCCAGACTCCAAACTATCCGATGGGCTCCTCAGATCCATCCAACTGGTCGTGGTCCAATACCTGACAACTGACTTTTTGCTCTCTTTTCCACCCCCTCCTATTTCAACCAACTTGTCTTTCCTCATATTTTGCTTTATTGTTTTCATCTAATCATGCAGAAATCCATTAAGGATTTTCCCTCTTCTTCCCTTGCCCCAACTGCAAATCATGTAGAAATATGTTAGTTTTCATGTTCTGTATTTTTTTTTCCAAAACTTGTCACACTGCTCCCTCATAAAACGTTCTTCTTCTACTTCTTCTTCTCATTCCCAAATTCATTTGTGTGATATCATTTGTAAAACAAACTGCCCCCTCGTTTTTATTGCTTACAAATTGTGCTTCTGCCAGAAGAGTTGTTGCCATT</canonical>
            <polymorphic>GATGAGCAGGAAGTGACGTTTTGCGAGCGGGGAACGATGATGACCGAGGAGGAGCCGTTGCGATACTTTAGTCCGCCGTATGGAGCGGAATTTGGGGATTTGAATCCGCATGAAAGGTGAGGTAGAAGACTAATCAAGATGCCGTAAAACCTGCGATAGAATGACCCGCACACTGTGAAGTTTGAGCTCAATTATCTCGGCTGCCATAAGAGATATCAAAAATGTGTCAACTGATAAAATGTGATAAAATGTTTGGGACATTATGATAAGCAATTTATCAGTTGACTACTTTTTCATATCTTTTACAGAAACGGAAATAAATTGTCTCAAAGATAAAGTCAAGGGGCATTTCTATTACAGGTTTTACGGTAGTTTTGTCAAAAAAAATATTTTAGTGGACCTCAACAATTCGACTACTCTTCACAACCATCTACATCCCAACCTCAAACTAGGAACCGTGGAACGATGTTTGAAAAGTAACCACCTTCCTCAATTACCGYATTTCTCAATCTTTCTCTCTTCCAGCGTAACCACTTGCAATACGGGCACTTCGATGATGGGCGAACAGTTTCCAGACTGCACACGCCACATATACACCCAGACTCCAAACTATCCGATGGGCTCCTCAGATCCATCCAACTGGTCGTGGTCCAATACCTGACAACTGACTTTTTGCTCTCTTTTCCACCCCCTCCTATTTCAACCAACTTGTCTTTCCTCATATTTTGCTTTATTGTTTTCATCTAATCATGCAGAAATCCATTAAGGATTTTCCCTCTTCTTCCCTTGCCCCAACTGCAAATCATGTAGAAATATGTTAGTTTTCATGTTCTGTATTTTTTTTTCCAAAACTTGTCACACTGCTCCCTCATAAAACGTTCTTCTTCTACTTCTTCTTCTCATTCCCAAATTCATTTGTGTGATATCATTTGTAAAACAAACTGCCCCCTCGTTTTTATTGCTTACAAATTGTGCTTCTGCCAGAAGAGTTGTTGCCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 331 73 60 33</canonical_bands>
                <polymorphic_bands>834 73 60 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTACATCCCAACCTCAAAC</pcr_primer_p1>
		<pcr_primer_p2>CAAAAAGTCAGTTGTCAGGTATT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATCTACATCCCAACCTCAAACTAGGAACCGTGGAACGATGTTTGAAAAGTAACCACCTTCCTCAATTACCGCATTTCTCAATCTTTCTCTCTTCCAGCGTAACCACTTGCAATACGGGCACTTCGATGATGGGCGAACAGTTTCCAGACTGCACACGCCACATATACACCCAGACTCCAAACTATCCGATGGGCTCCTCAGATCCATCCAACTGGTCGTGGTCCAATACCTGACAACTGACTTTTTG</canonical_amplicon>
		<polymorphic_amplicon>ATCTACATCCCAACCTCAAACTAGGAACCGTGGAACGATGTTTGAAAAGTAACCACCTTCCTCAATTACCGYATTTCTCAATCTTTCTCTCTTCCAGCGTAACCACTTGCAATACGGGCACTTCGATGATGGGCGAACAGTTTCCAGACTGCACACGCCACATATACACCCAGACTCCAAACTATCCGATGGGCTCCTCAGATCCATCCAACTGGTCGTGGTCCAATACCTGACAACTGACTTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23276</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>233490</contig_pos>
        <strand>+</strand>
        <context>TTCGATGATT[A/G]ATTTGAAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCTGATATCTATCACACTTTGTAACTTTTCTTCACTTTTTTCGATGATT</left_flank>
        <right_flank>ATTTGAAAGATTTGGAAAAAGCGGAAAAATTGGTTGAAAATCTTGTCCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTGACGTGGATGCGTATTCTGATATTCTGAATTCATCAACGAGGAAGTGAAGGAATGATGAGTTTCAGTTATTTTTTCATTTTTTTTTCATCTAGTTTTTTCTTAATATAATGACAAAAACATGAAATTCTTAGAAACACTTTGTTATGATCAATGTCGAGGAATCTGAAGCCCAATTAGTTACCAAGAATTTTCAAAATTTATTAATATTATTGCTAGTGCTGCTCCCTCGGGTTTTGTTGCTTGAACTTCAGAATGTGTTCAGTGTCAGTTTCAGGCTGATTCCTTGCGAAGTTTGAAAAAAATAGGGACAGACAAAAACAAGTAGTAAAAGGAGCAGCAAACTGAATGGAATTTTCTAGGGGCCAAGAAGAAATCGAAAGGTAACCCTCAAAGATGAAGCTTCGTGTTCTATCCTGATTGTTTTCTTTTTTTCTCACTTGGGTAACCTGATATCTATCACACTTTGTAACTTTTCTTCACTTTTTTCGATGATTAATTTGAAAGATTTGGAAAAAGCGGAAAAATTGGTTGAAAATCTTGTCCTTTCTTTACCTTTTTCTTGAATTTCTTCCTTCTAGTCACATTGATAAACCGGGCTTTGAGCGGGTCCTTGCGGGCCCTGCTATAGTTTTATATAGAATCGATATTTTTGGACCAACTAAAACAGATATGATAGAACTGGACAAGTACTACAAAATGATAATATTTTGATTACTGTACCTATTTTATGAACAAAGTTACAAGTCAAAAACCATTCCAGCTAGCTTTATGACTTGTAACTTCGCTCATAGACAAGATACAATATTCAAATTAGTATCAGTTTGTAGTACTTATTGAGTTCTGTAATATCTATTTTAGTTGGTACAAAAATAATGATTCTGAAAGAAACTATGGCTCTATGAAGCCGAGAAGGCCCGCCAGCTCCGTTTACAACTACGTTTCTGGTACAATTTCCCCGCTTCTCCCGTGTGGTCTTGAGCCAAAATAAATGGTCT</canonical>
            <polymorphic>ATTTGACGTGGATGCGTATTCTGATATTCTGAATTCATCAACGAGGAAGTGAAGGAATGATGAGTTTCAGTTATTTTTTCATTTTTTTTTCATCTAGTTTTTTCTTAATATAATGACAAAAACATGAAATTCTTAGAAACACTTTGTTATGATCAATGTCGAGGAATCTGAAGCCCAATTAGTTACCAAGAATTTTCAAAATTTATTAATATTATTGCTAGTGCTGCTCCCTCGGGTTTTGTTGCTTGAACTTCAGAATGTGTTCAGTGTCAGTTTCAGGCTGATTCCTTGCGAAGTTTGAAAAAAATAGGGACAGACAAAAACAAGTAGTAAAAGGAGCAGCAAACTGAATGGAATTTTCTAGGGGCCAAGAAGAAATCGAAAGGTAACCCTCAAAGATGAAGCTTCGTGTTCTATCCTGATTGTTTTCTTTTTTTCTCACTTGGGTAACCTGATATCTATCACACTTTGTAACTTTTCTTCACTTTTTTCGATGATTRATTTGAAAGATTTGGAAAAAGCGGAAAAATTGGTTGAAAATCTTGTCCTTTCTTTACCTTTTTCTTGAATTTCTTCCTTCTAGTCACATTGATAAACCGGGCTTTGAGCGGGTCCTTGCGGGCCCTGCTATAGTTTTATATAGAATCGATATTTTTGGACCAACTAAAACAGATATGATAGAACTGGACAAGTACTACAAAATGATAATATTTTGATTACTGTACCTATTTTATGAACAAAGTTACAAGTCAAAAACCATTCCAGCTAGCTTTATGACTTGTAACTTCGCTCATAGACAAGATACAATATTCAAATTAGTATCAGTTTGTAGTACTTATTGAGTTCTGTAATATCTATTTTAGTTGGTACAAAAATAATGATTCTGAAAGAAACTATGGCTCTATGAAGCCGAGAAGGCCCGCCAGCTCCGTTTACAACTACGTTTCTGGTACAATTTCCCCGCTTCTCCCGTGTGGTCTTGAGCCAAAATAAATGGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 292 206</canonical_bands>
                <polymorphic_bands>794 206</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 292 105 101</canonical_bands>
                <polymorphic_bands>794 105 101</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>246 155 145 140 96 49 47 40 31 28 14 9</canonical_bands>
                <polymorphic_bands>246 173 155 140 96 49 47 40 31 14 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGGGACAGACAAAAACAAGTAG</pcr_primer_p1>
		<pcr_primer_p2>TAAAGAAAGGACAAGATTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAGGGACAGACAAAAACAAGTAGTAAAAGGAGCAGCAAACTGAATGGAATTTTCTAGGGGCCAAGAAGAAATCGAAAGGTAACCCTCAAAGATGAAGCTTCGTGTTCTATCCTGATTGTTTTCTTTTTTTCTCACTTGGGTAACCTGATATCTATCACACTTTGTAACTTTTCTTCACTTTTTTCGATGATTAATTTGAAAGATTTGGAAAAAGCGGAAAAATTGGTTGAAAATCTTGTCCTTTCTTTA</canonical_amplicon>
		<polymorphic_amplicon>TAGGGACAGACAAAAACAAGTAGTAAAAGGAGCAGCAAACTGAATGGAATTTTCTAGGGGCCAAGAAGAAATCGAAAGGTAACCCTCAAAGATGAAGCTTCGTGTTCTATCCTGATTGTTTTCTTTTTTTCTCACTTGGGTAACCTGATATCTATCACACTTTGTAACTTTTCTTCACTTTTTTCGATGATTRATTTGAAAGATTTGGAAAAAGCGGAAAAATTGGTTGAAAATCTTGTCCTTTCTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23277</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>233337</contig_pos>
        <strand>+</strand>
        <context>GAGCAGCAAA[C/T]TGAATGGAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGAAAAAAATAGGGACAGACAAAAACAAGTAGTAAAAGGAGCAGCAAA</left_flank>
        <right_flank>TGAATGGAATTTTCTAGGGGCCAAGAAGAAATCGAAAGGTAACCCTCAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCATTGTCACGAAATACACCATATAACACCTACTTTCTTTTTGTTCTTCCCAAAAGAAGAAGATGTTCTGCAAATTGCACTGACAACGAGTTCCTCATTTCTTTTAGCTTTGACCCCATTTACGCATTCTCTCATTTACATAGAAATACGTATTTGACGTGGATGCGTATTCTGATATTCTGAATTCATCAACGAGGAAGTGAAGGAATGATGAGTTTCAGTTATTTTTTCATTTTTTTTTCATCTAGTTTTTTCTTAATATAATGACAAAAACATGAAATTCTTAGAAACACTTTGTTATGATCAATGTCGAGGAATCTGAAGCCCAATTAGTTACCAAGAATTTTCAAAATTTATTAATATTATTGCTAGTGCTGCTCCCTCGGGTTTTGTTGCTTGAACTTCAGAATGTGTTCAGTGTCAGTTTCAGGCTGATTCCTTGCGAAGTTTGAAAAAAATAGGGACAGACAAAAACAAGTAGTAAAAGGAGCAGCAAACTGAATGGAATTTTCTAGGGGCCAAGAAGAAATCGAAAGGTAACCCTCAAAGATGAAGCTTCGTGTTCTATCCTGATTGTTTTCTTTTTTTCTCACTTGGGTAACCTGATATCTATCACACTTTGTAACTTTTCTTCACTTTTTTCGATGATTAATTTGAAAGATTTGGAAAAAGCGGAAAAATTGGTTGAAAATCTTGTCCTTTCTTTACCTTTTTCTTGAATTTCTTCCTTCTAGTCACATTGATAAACCGGGCTTTGAGCGGGTCCTTGCGGGCCCTGCTATAGTTTTATATAGAATCGATATTTTTGGACCAACTAAAACAGATATGATAGAACTGGACAAGTACTACAAAATGATAATATTTTGATTACTGTACCTATTTTATGAACAAAGTTACAAGTCAAAAACCATTCCAGCTAGCTTTATGACTTGTAACTTCGCTCATAGACAAGATACAATATTCAAATTAGTATCAGTTTGTAGTACTTATTGAGTTCT</canonical>
            <polymorphic>CCTCATTGTCACGAAATACACCATATAACACCTACTTTCTTTTTGTTCTTCCCAAAAGAAGAAGATGTTCTGCAAATTGCACTGACAACGAGTTCCTCATTTCTTTTAGCTTTGACCCCATTTACGCATTCTCTCATTTACATAGAAATACGTATTTGACGTGGATGCGTATTCTGATATTCTGAATTCATCAACGAGGAAGTGAAGGAATGATGAGTTTCAGTTATTTTTTCATTTTTTTTTCATCTAGTTTTTTCTTAATATAATGACAAAAACATGAAATTCTTAGAAACACTTTGTTATGATCAATGTCGAGGAATCTGAAGCCCAATTAGTTACCAAGAATTTTCAAAATTTATTAATATTATTGCTAGTGCTGCTCCCTCGGGTTTTGTTGCTTGAACTTCAGAATGTGTTCAGTGTCAGTTTCAGGCTGATTCCTTGCGAAGTTTGAAAAAAATAGGGACAGACAAAAACAAGTAGTAAAAGGAGCAGCAAAYTGAATGGAATTTTCTAGGGGCCAAGAAGAAATCGAAAGGTAACCCTCAAAGATGAAGCTTCGTGTTCTATCCTGATTGTTTTCTTTTTTTCTCACTTGGGTAACCTGATATCTATCACACTTTGTAACTTTTCTTCACTTTTTTCGATGATTAATTTGAAAGATTTGGAAAAAGCGGAAAAATTGGTTGAAAATCTTGTCCTTTCTTTACCTTTTTCTTGAATTTCTTCCTTCTAGTCACATTGATAAACCGGGCTTTGAGCGGGTCCTTGCGGGCCCTGCTATAGTTTTATATAGAATCGATATTTTTGGACCAACTAAAACAGATATGATAGAACTGGACAAGTACTACAAAATGATAATATTTTGATTACTGTACCTATTTTATGAACAAAGTTACAAGTCAAAAACCATTCCAGCTAGCTTTATGACTTGTAACTTCGCTCATAGACAAGATACAATATTCAAATTAGTATCAGTTTGTAGTACTTATTGAGTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTTGCTTGAACTTCAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TGAAGAAAAGTTACAAAGTGTGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTGTTGCTTGAACTTCAGAATGTGTTCAGTGTCAGTTTCAGGCTGATTCCTTGCGAAGTTTGAAAAAAATAGGGACAGACAAAAACAAGTAGTAAAAGGAGCAGCAAACTGAATGGAATTTTCTAGGGGCCAAGAAGAAATCGAAAGGTAACCCTCAAAGATGAAGCTTCGTGTTCTATCCTGATTGTTTTCTTTTTTTCTCACTTGGGTAACCTGATATCTATCACACTTTGTAACTTTTCTTCA</canonical_amplicon>
		<polymorphic_amplicon>TTGTTGCTTGAACTTCAGAATGTGTTCAGTGTCAGTTTCAGGCTGATTCCTTGCGAAGTTTGAAAAAAATAGGGACAGACAAAAACAAGTAGTAAAAGGAGCAGCAAAYTGAATGGAATTTTCTAGGGGCCAAGAAGAAATCGAAAGGTAACCCTCAAAGATGAAGCTTCGTGTTCTATCCTGATTGTTTTCTTTTTTTCTCACTTGGGTAACCTGATATCTATCACACTTTGTAACTTTTCTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23278</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>342420</contig_pos>
        <strand>+</strand>
        <context>GCCTTATGTT[C/T]CAAACCAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGGTAGCCTGCTTTTTTTGTACCAGAATAACAGTTAGCAGCCTTATGTT</left_flank>
        <right_flank>CAAACCAAAATGTTGTAATTTTGTTATTGTCAAAAATGATTCATTCAAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGATACAAAGCGGATTGAAACATTCCGAGGTTTCCGTTTAATTTTTTAATCTTCTCAATGAAATAAAGTTATCAATCCTAGCCTGATTGGCTCAACAGCTATCCTTGACTCGGAAAATACAAAAAGTTTTTAATCAATCATTTATTTCGTTTTTGATGAATTAAGTTTGGTTTATAATCAACGTTATGTAGTAGGGTTTGAAACCGAAAGGGACAAGAGCAAAGAAAATGGGATCGTTGACTTGGGCTTTTAAAGATGAACAACAAGTAAACTATCAATATTATGCTTCTATGCAAGAATCGGAGCTGTGGAAGAAAAGCTCTGATAGCCGTGGCCGCATGTCCCACAGCGATAACTACCGTAACCTAAAAACATTTTTGTTCTAGTTTTTTCATGCTTCTTGACCATTGAAGAAACAAATCCTGAAAATATAAATACTTTTAGGTAACGGTAGCCTGCTTTTTTTGTACCAGAATAACAGTTAGCAGCCTTATGTTTCAAACCAAAATGTTGTAATTTTGTTATTGTCAAAAATGATTCATTCAAAAGCGTTTCTTTTTTTGGAATTTGCTTTTAGAGCTGAATCATAGTTTAAGAAACATGAAAGTGAACCAAATCTTATGATTTTCCAAAAAATCTAGGCATAAAAAACTTTCAGCGGGAGAAGGAAGTAAACCTGACGAATATTTATTGGTTCTGTTATTTGTATTTTTCAGAATTCCCTTCACAGTGACGTCTTCTTCTAGACAATGTCTAATGACACACATTTTAACGAAAGCGAAATCGAAAAAAAAATACTTGGAGCTCTTTTTTGTAAATCAAGAAGTTTTCGGAGATGTTTCTTGTGCCCATATAAAAATTCTCTACACAGAATATATGAAACATGAAACCCTTCCGGTGAGTAAGTGAGCAGAAAAAACAAGAGATCTCACTGACCACCGTTAATTGGAGAAGAAAAAGGGCACGGAGCACCAAAGAGAGTTTTCCCCCTTCACTGA</canonical>
            <polymorphic>CAAGATACAAAGCGGATTGAAACATTCCGAGGTTTCCGTTTAATTTTTTAATCTTCTCAATGAAATAAAGTTATCAATCCTAGCCTGATTGGCTCAACAGCTATCCTTGACTCGGAAAATACAAAAAGTTTTTAATCAATCATTTATTTCGTTTTTGATGAATTAAGTTTGGTTTATAATCAACGTTATGTAGTAGGGTTTGAAACCGAAAGGGACAAGAGCAAAGAAAATGGGATCGTTGACTTGGGCTTTTAAAGATGAACAACAAGTAAACTATCAATATTATGCTTCTATGCAAGAATCGGAGCTGTGGAAGAAAAGCTCTGATAGCCGTGGCCGCATGTCCCACAGCGATAACTACCGTAACCTAAAAACATTTTTGTTCTAGTTTTTTCATGCTTCTTGACCATTGAAGAAACAAATCCTGAAAATATAAATACTTTTAGGTAACGGTAGCCTGCTTTTTTTGTACCAGAATAACAGTTAGCAGCCTTATGTTYCAAACCAAAATGTTGTAATTTTGTTATTGTCAAAAATGATTCATTCAAAAGCGTTTCTTTTTTTGGAATTTGCTTTTAGAGCTGAATCATAGTTTAAGAAACATGAAAGTGAACCAAATCTTATGATTTTCCAAAAAATCTAGGCATAAAAAACTTTCAGCGGGAGAAGGAAGTAAACCTGACGAATATTTATTGGTTCTGTTATTTGTATTTTTCAGAATTCCCTTCACAGTGACGTCTTCTTCTAGACAATGTCTAATGACACACATTTTAACGAAAGCGAAATCGAAAAAAAAATACTTGGAGCTCTTTTTTGTAAATCAAGAAGTTTTCGGAGATGTTTCTTGTGCCCATATAAAAATTCTCTACACAGAATATATGAAACATGAAACCCTTCCGGTGAGTAAGTGAGCAGAAAAAACAAGAGATCTCACTGACCACCGTTAATTGGAGAAGAAAAAGGGCACGGAGCACCAAAGAGAGTTTTCCCCCTTCACTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAACGGTAGCCTGCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CCAATAAATATTCGTCAGGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAACGGTAGCCTGCTTTTTTTGTACCAGAATAACAGTTAGCAGCCTTATGTTTCAAACCAAAATGTTGTAATTTTGTTATTGTCAAAAATGATTCATTCAAAAGCGTTTCTTTTTTTGGAATTTGCTTTTAGAGCTGAATCATAGTTTAAGAAACATGAAAGTGAACCAAATCTTATGATTTTCCAAAAAATCTAGGCATAAAAAACTTTCAGCGGGAGAAGGAAGTAAACCTGACGAATATTTATTGG</canonical_amplicon>
		<polymorphic_amplicon>GTAACGGTAGCCTGCTTTTTTTGTACCAGAATAACAGTTAGCAGCCTTATGTTYCAAACCAAAATGTTGTAATTTTGTTATTGTCAAAAATGATTCATTCAAAAGCGTTTCTTTTTTTGGAATTTGCTTTTAGAGCTGAATCATAGTTTAAGAAACATGAAAGTGAACCAAATCTTATGATTTTCCAAAAAATCTAGGCATAAAAAACTTTCAGCGGGAGAAGGAAGTAAACCTGACGAATATTTATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23308</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>350463</contig_pos>
        <strand>+</strand>
        <context>TTCAGTRCCT[G/T]TTCAGTCGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTTAAAAAATCATGTTTGGAAATTGTCTAGTTAAGCTTTTCAGTGCCT</left_flank>
        <right_flank>TTCAGTCGAAAGTTCGAGAATCCTGAAAAGCCAACTAGAACTTCTTGGAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTTGGTGATACAAGCTCCACCATAAAGAATGGCATACATTAGACAATTGTTACGGCGACCACTGAACATTTAGAAACTCTTTAAATTCAAGGTTTATAGCGAAACCCACAATTTATCGGCGATGGATCCGATGAAAGTTCCAAAAAGAAGACTTGATCCAATCCAGCAATGAAGAGGATTTCGATTTGATGTTTGGACATTCCATAGGATTCATAGAGGGCGTAGACATGAGGACCTTGCAGCCAATCTCCCGCTGAAAATTTTCAGATTTCCAGTTTCAAGATTAGTGTTGAAGTCTTGGAAGCTCGGAAAATTTGGATGTGGTTTAAGAAAAGTTTACTGAAATTTATCTAGTTTGAGTATATATTTGGAAAAAAAACTTTCAAATTCTGAGATGATTGTTACTGATTAGAACTTCTCAAACGTTTGTACACCTGGTTCAGTTTGATTTTAAAAAATCATGTTTGGAAATTGTCTAGTTAAGCTTTTCAGTGCCTTTTCAGTCGAAAGTTCGAGAATCCTGAAAAGCCAACTAGAACTTCTTGGATTTTTGTAGTTGGGAATTCTATCTAAATGTTTCTGCAGTTCATGGGATTTTTTTGATTGAAAACAAAATTTTTTGATTGAAAACAAGAAACTATGTCCTCTGGAATGGTTTCAACAGAAAGTTACCAAATACGAACAAGATCTAGTTTTCTTCAAATCTAAAAGTCTTTTTTGAATTTTTTCTAGGTGGCCTAAGTTGGAGTGTGAAGCTGAAGCAAATAAAAATGTTTTGGATAACCATATTCTGTCTAAATTCTAGTTTGAATGTAGAATTTTCATTTCAATTTACAAAAAGTTCAGTCTAACTCTCCTACATTTTTATAGGTCATTTTGTTTCCCTGGCCCTAAACAAACACAATTTTTACGATAACAGAATACTCGTCAGTGACGAGCCATCACTCGAATATAGCACACCCGGGTTTACGAAAGAGTATTAAAAATCCTACCAACTG</canonical>
            <polymorphic>TGCTTGGTGATACAAGCTCCACCATAAAGAATGGCATACATTAGACAATTGTTACGGCGACCACTGAACATTTAGAAACTCTTTAAATTCAAGGTTTATAGCGAAACCCACAATTTATCGGCGATGGATCCGATGAAAGTTCCAAAAAGAAGACTTGATCCAATCCAGCAATGAAGAGGATTTCGATTTGATGTTTGGACATTCCATAGGATTCATAGAGGGCGTAGACATGAGGACCTTGCAGCCAATCTCCCGCTGAAAATTTTCAGATTTCCAGTTTCAAGATTAGTGTTGAAGTCTTGGAAGCTCGGAAAATTTGGATGTGGTTTAAGAAAAGTTTACTGAAATTTATCTAGTTTGAGTATATATTTGGAAAAAAAACTTTCAAATTCTGAGATGATTGTTACTGATTAGAACTTCTCAAACGTTTGTACACCTGGTTCAGTTTGATTTTAAAAAATCATGTTTGGAAATTGTCTAGTTAAGCTTTTCAGTGCCTKTTCAGTCGAAAGTTCGAGAATCCTGAAAAGCCAACTAGAACTTCTTGGATTTTTGTAGTTGGGAATTCTATCTAAATGTTTCTGCAGTTCATGGGATTTTTTTGATTGAAAACAAAATTTTTTGATTGAAAACAAGAAACTATGTCCTCTGGAATGGTTTCAACAGAAAGTTACCAAATACGAACAAGATCTAGTTTTCTTCAAATCTAAAAGTCTTTTTTGAATTTTTTCTAGGTGGCCTAAGTTGGAGTGTGAAGCTGAAGCAAATAAAAATGTTTTGGATAACCATATTCTGTCTAAATTCTAGTTTGAATGTAGAATTTTCATTTCAATTTACAAAAAGTTCAGTCTAACTCTCCTACATTTTTATAGGTCATTTTGTTTCCCTGGCCCTAAACAAACACAATTTTTACGATAACAGAATACTCGTCAGTGACGAGCCATCACTCGAATATAGCACACCCGGGTTTACGAAAGAGTATTAAAAATCCTACCAACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTTGGATGTGGTTTAAGA</pcr_primer_p1>
		<pcr_primer_p2>CAACTACAAAAATCCAAGAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATTTGGATGTGGTTTAAGAAAAGTTTACTGAAATTTATCTAGTTTGAGTATATATTTGGAAAAAAAACTTTCAAATTCTGAGATGATTGTTACTGATTAGAACTTCTCAAACGTTTGTACACCTGGTTCAGTTTGATTTTAAAAAATCATGTTTGGAAATTGTCTAGTTAAGCTTTTCAGTGCCTTTTCAGTCGAAAGTTCGAGAATCCTGAAAAGCCAACTAGAACTTCTTGGATTTTTGTAGTTG</canonical_amplicon>
		<polymorphic_amplicon>AAAATTTGGATGTGGTTTAAGAAAAGTTTACTGAAATTTATCTAGTTTGAGTATATATTTGGAAAAAAAACTTTCAAATTCTGAGATGATTGTTACTGATTAGAACTTCTCAAACGTTTGTACACCTGGTTCAGTTTGATTTTAAAAAATCATGTTTGGAAATTGTCTAGTTAAGCTTTTCAGTGCCTKTTCAGTCGAAAGTTCGAGAATCCTGAAAAGCCAACTAGAACTTCTTGGATTTTTGTAGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23309</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>350459</contig_pos>
        <strand>+</strand>
        <context>GCTTTTCAGT[A/G]CCTKTTCAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGATTTTAAAAAATCATGTTTGGAAATTGTCTAGTTAAGCTTTTCAGT</left_flank>
        <right_flank>CCTTTTCAGTCGAAAGTTCGAGAATCCTGAAAAGCCAACTAGAACTTCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATGCTTGGTGATACAAGCTCCACCATAAAGAATGGCATACATTAGACAATTGTTACGGCGACCACTGAACATTTAGAAACTCTTTAAATTCAAGGTTTATAGCGAAACCCACAATTTATCGGCGATGGATCCGATGAAAGTTCCAAAAAGAAGACTTGATCCAATCCAGCAATGAAGAGGATTTCGATTTGATGTTTGGACATTCCATAGGATTCATAGAGGGCGTAGACATGAGGACCTTGCAGCCAATCTCCCGCTGAAAATTTTCAGATTTCCAGTTTCAAGATTAGTGTTGAAGTCTTGGAAGCTCGGAAAATTTGGATGTGGTTTAAGAAAAGTTTACTGAAATTTATCTAGTTTGAGTATATATTTGGAAAAAAAACTTTCAAATTCTGAGATGATTGTTACTGATTAGAACTTCTCAAACGTTTGTACACCTGGTTCAGTTTGATTTTAAAAAATCATGTTTGGAAATTGTCTAGTTAAGCTTTTCAGTGCCTTTTCAGTCGAAAGTTCGAGAATCCTGAAAAGCCAACTAGAACTTCTTGGATTTTTGTAGTTGGGAATTCTATCTAAATGTTTCTGCAGTTCATGGGATTTTTTTGATTGAAAACAAAATTTTTTGATTGAAAACAAGAAACTATGTCCTCTGGAATGGTTTCAACAGAAAGTTACCAAATACGAACAAGATCTAGTTTTCTTCAAATCTAAAAGTCTTTTTTGAATTTTTTCTAGGTGGCCTAAGTTGGAGTGTGAAGCTGAAGCAAATAAAAATGTTTTGGATAACCATATTCTGTCTAAATTCTAGTTTGAATGTAGAATTTTCATTTCAATTTACAAAAAGTTCAGTCTAACTCTCCTACATTTTTATAGGTCATTTTGTTTCCCTGGCCCTAAACAAACACAATTTTTACGATAACAGAATACTCGTCAGTGACGAGCCATCACTCGAATATAGCACACCCGGGTTTACGAAAGAGTATTAAAAATCCTACCA</canonical>
            <polymorphic>AAAATGCTTGGTGATACAAGCTCCACCATAAAGAATGGCATACATTAGACAATTGTTACGGCGACCACTGAACATTTAGAAACTCTTTAAATTCAAGGTTTATAGCGAAACCCACAATTTATCGGCGATGGATCCGATGAAAGTTCCAAAAAGAAGACTTGATCCAATCCAGCAATGAAGAGGATTTCGATTTGATGTTTGGACATTCCATAGGATTCATAGAGGGCGTAGACATGAGGACCTTGCAGCCAATCTCCCGCTGAAAATTTTCAGATTTCCAGTTTCAAGATTAGTGTTGAAGTCTTGGAAGCTCGGAAAATTTGGATGTGGTTTAAGAAAAGTTTACTGAAATTTATCTAGTTTGAGTATATATTTGGAAAAAAAACTTTCAAATTCTGAGATGATTGTTACTGATTAGAACTTCTCAAACGTTTGTACACCTGGTTCAGTTTGATTTTAAAAAATCATGTTTGGAAATTGTCTAGTTAAGCTTTTCAGTRCCTTTTCAGTCGAAAGTTCGAGAATCCTGAAAAGCCAACTAGAACTTCTTGGATTTTTGTAGTTGGGAATTCTATCTAAATGTTTCTGCAGTTCATGGGATTTTTTTGATTGAAAACAAAATTTTTTGATTGAAAACAAGAAACTATGTCCTCTGGAATGGTTTCAACAGAAAGTTACCAAATACGAACAAGATCTAGTTTTCTTCAAATCTAAAAGTCTTTTTTGAATTTTTTCTAGGTGGCCTAAGTTGGAGTGTGAAGCTGAAGCAAATAAAAATGTTTTGGATAACCATATTCTGTCTAAATTCTAGTTTGAATGTAGAATTTTCATTTCAATTTACAAAAAGTTCAGTCTAACTCTCCTACATTTTTATAGGTCATTTTGTTTCCCTGGCCCTAAACAAACACAATTTTTACGATAACAGAATACTCGTCAGTGACGAGCCATCACTCGAATATAGCACACCCGGGTTTACGAAAGAGTATTAAAAATCCTACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>241 181 149 110 61 47 42 35 34 32 15 13 13 12 11 2 2</canonical_bands>
                <polymorphic_bands>302 181 149 110 47 42 35 34 32 15 13 13 12 11 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTTGGATGTGGTTTAAGA</pcr_primer_p1>
		<pcr_primer_p2>CAACTACAAAAATCCAAGAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATTTGGATGTGGTTTAAGAAAAGTTTACTGAAATTTATCTAGTTTGAGTATATATTTGGAAAAAAAACTTTCAAATTCTGAGATGATTGTTACTGATTAGAACTTCTCAAACGTTTGTACACCTGGTTCAGTTTGATTTTAAAAAATCATGTTTGGAAATTGTCTAGTTAAGCTTTTCAGTGCCTTTTCAGTCGAAAGTTCGAGAATCCTGAAAAGCCAACTAGAACTTCTTGGATTTTTGTAGTTG</canonical_amplicon>
		<polymorphic_amplicon>AAAATTTGGATGTGGTTTAAGAAAAGTTTACTGAAATTTATCTAGTTTGAGTATATATTTGGAAAAAAAACTTTCAAATTCTGAGATGATTGTTACTGATTAGAACTTCTCAAACGTTTGTACACCTGGTTCAGTTTGATTTTAAAAAATCATGTTTGGAAATTGTCTAGTTAAGCTTTTCAGTRCCTTTTCAGTCGAAAGTTCGAGAATCCTGAAAAGCCAACTAGAACTTCTTGGATTTTTGTAGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23311</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>351161</contig_pos>
        <strand>+</strand>
        <context>CGATCGTTGC[A/C]TATAAAGATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGGATGCTGTTTCTGGACAGTCTTCTTCTTCTTCCTACCCGATCGTTGC</left_flank>
        <right_flank>TATAAAGATGGTTCTAGATAATGAGAGGGATTTTGGGGGCGTGGCTAATA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCAAATCTAAAAGTCTTTTTTGAATTTTTTCTAGGTGGCCTAAGTTGGAGTGTGAAGCTGAAGCAAATAAAAATGTTTTGGATAACCATATTCTGTCTAAATTCTAGTTTGAATGTAGAATTTTCATTTCAATTTACAAAAAGTTCAGTCTAACTCTCCTACATTTTTATAGGTCATTTTGTTTCCCTGGCCCTAAACAAACACAATTTTTACGATAACAGAATACTCGTCAGTGACGAGCCATCACTCGAATATAGCACACCCGGGTTTACGAAAGAGTATTAAAAATCCTACCAACTGCCATCATATACACAATGAGATATGTTCTTTGGAAACTTTTGAATTGTGGATCATCATTTGATTCGGTGGCAGATCTTGTATAGAAATAAAGGAGCCCACAAACGGATGCAAGGCCGTAGAATACACCGACAAACATGGATTTTTCTTCTGGATGCTGTTTCTGGACAGTCTTCTTCTTCTTCCTACCCGATCGTTGCATATAAAGATGGTTCTAGATAATGAGAGGGATTTTGGGGGCGTGGCTAATAGGCATGAGCGAGAGAGTGAGAGATGGAGACACAGCGAAAAGCCACGTTTGGGGAGACAATTCGTGGTGTTTTCATGCAAGCCAAATTGAAAAAAAGAGAAGAGGAATAGAGAAGGAAAAGAGCGGCAAAACTGAATTGATATGTTTCGAATTCTATATTTGAACAGACTGTTGGAGGAGAATGGAGAGAGGAAGAAAAAGAATAATAAGGGGGAAGAAGACGGTGTAAAAGTTGTAAACTTTGTAGAAACACAGGAGTGAAAAAGAGGGAATAAGAGATGAAGGAAGTTCAAAACTTGAAAATTTGAAGAGAAAAGGAAACTCTGAAAAAATAGGTTGAAACTTGTATATGGTCCGAATTTGATAATTTTGAAATATACAGTAGCCTAAAGTGATACTAAAATATTCAAATATCACTACAGTATCTTTGAGAAAACACAAGAATAGCTTC</canonical>
            <polymorphic>CTTCAAATCTAAAAGTCTTTTTTGAATTTTTTCTAGGTGGCCTAAGTTGGAGTGTGAAGCTGAAGCAAATAAAAATGTTTTGGATAACCATATTCTGTCTAAATTCTAGTTTGAATGTAGAATTTTCATTTCAATTTACAAAAAGTTCAGTCTAACTCTCCTACATTTTTATAGGTCATTTTGTTTCCCTGGCCCTAAACAAACACAATTTTTACGATAACAGAATACTCGTCAGTGACGAGCCATCACTCGAATATAGCACACCCGGGTTTACGAAAGAGTATTAAAAATCCTACCAACTGCCATCATATACACAATGAGATATGTTCTTTGGAAACTTTTGAATTGTGGATCATCATTTGATTCGGTGGCAGATCTTGTATAGAAATAAAGGAGCCCACAAACGGATGCAAGGCCGTAGAATACACCGACAAACATGGATTTTTCTTCTGGATGCTGTTTCTGGACAGTCTTCTTCTTCTTCCTACCCGATCGTTGCMTATAAAGATGGTTCTAGATAATGAGAGGGATTTTGGGGGCGTGGCTAATAGGCATGAGCGAGAGAGTGAGAGATGGAGACACAGCGAAAAGCCACGTTTGGGGAGACAATTCGTGGTGTTTTCATGCAAGCCAAATTGAAAAAAAGAGAAGAGGAATAGAGAAGGAAAAGAGCGGCAAAACTGAATTGATATGTTTCGAATTCTATATTTGAACAGACTGTTGGAGGAGAATGGAGAGAGGAAGAAAAAGAATAATAAGGGGGAAGAAGACGGTGTAAAAGTTGTAAACTTTGTAGAAACACAGGAGTGAAAAAGAGGGAATAAGAGATGAAGGAAGTTCAAAACTTGAAAATTTGAAGAGAAAAGGAAACTCTGAAAAAATAGGTTGAAACTTGTATATGGTCCGAATTTGATAATTTTGAAATATACAGTAGCCTAAAGTGATACTAAAATATTCAAATATCACTACAGTATCTTTGAGAAAACACAAGAATAGCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>410 374 128 88</canonical_bands>
                <polymorphic_bands>410 374 216</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTTTTGAATTGTGGATCAT</pcr_primer_p1>
		<pcr_primer_p2>CTGTGTCTCCATCTCTCACTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACTTTTGAATTGTGGATCATCATTTGATTCGGTGGCAGATCTTGTATAGAAATAAAGGAGCCCACAAACGGATGCAAGGCCGTAGAATACACCGACAAACATGGATTTTTCTTCTGGATGCTGTTTCTGGACAGTCTTCTTCTTCTTCCTACCCGATCGTTGCATATAAAGATGGTTCTAGATAATGAGAGGGATTTTGGGGGCGTGGCTAATAGGCATGAGCGAGAGAGTGAGAGATGGAGACACAG</canonical_amplicon>
		<polymorphic_amplicon>AAACTTTTGAATTGTGGATCATCATTTGATTCGGTGGCAGATCTTGTATAGAAATAAAGGAGCCCACAAACGGATGCAAGGCCGTAGAATACACCGACAAACATGGATTTTTCTTCTGGATGCTGTTTCTGGACAGTCTTCTTCTTCTTCCTACCCGATCGTTGCMTATAAAGATGGTTCTAGATAATGAGAGGGATTTTGGGGGCGTGGCTAATAGGCATGAGCGAGAGAGTGAGAGATGGAGACACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23312</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>353182</contig_pos>
        <strand>+</strand>
        <context>TTCGTATGTC[A/T]CCTGGTGTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGTGAACATTGTGAAACCACTCGTAATAAGGAACACAAATTCGTATGTC</left_flank>
        <right_flank>CCTGGTGTATAAAGTATTGATTAATCTAGTTACAAAGTTCAGTGCTTCTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAATCCCGCGCCGAAACCACCTGGCGCGTCAACTGCGTCATTGACACACCCGATGGGGGTGCAAACACGTCAGCTTATTTTCTCGAATCCCGTTCACTTTCTCTCGGTCCTCTTCTTTTATGTGCATCGTGCTCAACGGTTTTTCTCTCCACTTTTTGCTTGCCTTTTGCTTAATATTTTCACTCTCTTCCCAGTCGAATCCCTAGAATATTTATTGCCCACTAATCCGTGTGAGATTTCCAGTCAGATGGTCGGCCTTCGATTCGTTCTTCTCGTCTCCTTGGTGATCGCCGCAGCTGTTTCAGCACAACAGTGCGAAGGTGATCGAAGCAATCGATAAATCCTCTAATTTATTCATTTTTCAGTATGTAAAAAAGTGCTGGATGATGTGATGGCTAAAGTTCCGTCTGCCGATAAATCCAAGCCAGATGCCATAGGAAAAGTGATTCGTGAACATTGTGAAACCACTCGTAATAAGGAACACAAATTCGTATGTCACCTGGTGTATAAAGTATTGATTAATCTAGTTACAAAGTTCAGTGCTTCTACATCGGCGCTCTCCCAGAGTCAGCTACTTCCATCATGAATGAGGTCACCAAGCCACTCAGTTGGTCCATGCCAACCGATAAAGTTTGTAAAGATAAGCTAAAGAGCAAGGATGCCCAAATCTGCGAGCTTAAATACGGTTAGTTATCCTTATCTTCTGAATAATGATTTGCACGTTTTCTTCTCCGTTGCCTCTTGTAAATATACATTGAATAACCAAAACAAAATTGCAGACAAACCACTGGACTGGAAGACTATTGATTTGAAGAAGATGCGCGTCAAAGAGCTCAAAAACATCCTCGGCGAGTGGGGAGAGGCATGCAAAGGGTGCACTGAGAAGAGCGAGTTCATCAAGCGGATTGAGGAGCTCAAGCCAAAATATGTCAAAGACGAGCTGTGATTGTGTCATCACCGACATAAAGAGATTAGCGTGTTTCAAATTACTTGTTAAT</canonical>
            <polymorphic>TCGAATCCCGCGCCGAAACCACCTGGCGCGTCAACTGCGTCATTGACACACCCGATGGGGGTGCAAACACGTCAGCTTATTTTCTCGAATCCCGTTCACTTTCTCTCGGTCCTCTTCTTTTATGTGCATCGTGCTCAACGGTTTTTCTCTCCACTTTTTGCTTGCCTTTTGCTTAATATTTTCACTCTCTTCCCAGTCGAATCCCTAGAATATTTATTGCCCACTAATCCGTGTGAGATTTCCAGTCAGATGGTCGGCCTTCGATTCGTTCTTCTCGTCTCCTTGGTGATCGCCGCAGCTGTTTCAGCACAACAGTGCGAAGGTGATCGAAGCAATCGATAAATCCTCTAATTTATTCATTTTTCAGTATGTAAAAAAGTGCTGGATGATGTGATGGCTAAAGTTCCGTCTGCCGATAAATCCAAGCCAGATGCCATAGGAAAAGTGATTCGTGAACATTGTGAAACCACTCGTAATAAGGAACACAAATTCGTATGTCWCCTGGTGTATAAAGTATTGATTAATCTAGTTACAAAGTTCAGTGCTTCTACATCGGCGCTCTCCCAGAGTCAGCTACTTCCATCATGAATGAGGTCACCAAGCCACTCAGTTGGTCCATGCCAACCGATAAAGTTTGTAAAGATAAGCTAAAGAGCAAGGATGCCCAAATCTGCGAGCTTAAATACGGTTAGTTATCCTTATCTTCTGAATAATGATTTGCACGTTTTCTTCTCCGTTGCCTCTTGTAAATATACATTGAATAACCAAAACAAAATTGCAGACAAACCACTGGACTGGAAGACTATTGATTTGAAGAAGATGCGCGTCAAAGAGCTCAAAAACATCCTCGGCGAGTGGGGAGAGGCATGCAAAGGGTGCACTGAGAAGAGCGAGTTCATCAAGCGGATTGAGGAGCTCAAGCCAAAATATGTCAAAGACGAGCTGTGATTGTGTCATCACCGACATAAAGAGATTAGCGTGTTTCAAATTACTTGTTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACNNNGTG</site>
                <isoschizomers>
                    <enzyme>AdeI</enzyme>
                    <enzyme>DraIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>117 68 67 67 56 54 53 53 39 37 31 29 28 27 22 21 21 21 20 19 16 15 13 12 10 9 8 8 8 7 7 7 6 6 6 6 2 2 2</canonical_bands>
                <polymorphic_bands>117 68 67 67 56 54 53 53 39 37 31 29 28 27 22 22 21 21 21 20 19 16 13 12 10 9 8 8 8 7 7 6 6 6 6 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>ACCWGGT</site>
                <isoschizomers>
                    <enzyme>MabI</enzyme>
                    <enzyme>SexAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>496 407 65 32</canonical_bands>
                <polymorphic_bands>528 407 65</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>496 407 97</canonical_bands>
                <polymorphic_bands>593 407</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTCGTGAACATTGTGAAAC</pcr_primer_p1>
		<pcr_primer_p2>GGATAACTAACCGTATTTAAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GATTCGTGAACATTGTGAAACCACTCGTAATAAGGAACACAAATTCGTATGTCACCTGGTGTATAAAGTATTGATTAATCTAGTTACAAAGTTCAGTGCTTCTACATCGGCGCTCTCCCAGAGTCAGCTACTTCCATCATGAATGAGGTCACCAAGCCACTCAGTTGGTCCATGCCAACCGATAAAGTTTGTAAAGATAAGCTAAAGAGCAAGGATGCCCAAATCTGCGAGCTTAAATACGGTTAGTTATCC</canonical_amplicon>
		<polymorphic_amplicon>GATTCGTGAACATTGTGAAACCACTCGTAATAAGGAACACAAATTCGTATGTCWCCTGGTGTATAAAGTATTGATTAATCTAGTTACAAAGTTCAGTGCTTCTACATCGGCGCTCTCCCAGAGTCAGCTACTTCCATCATGAATGAGGTCACCAAGCCACTCAGTTGGTCCATGCCAACCGATAAAGTTTGTAAAGATAAGCTAAAGAGCAAGGATGCCCAAATCTGCGAGCTTAAATACGGTTAGTTATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23313</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>413256</contig_pos>
        <strand>+</strand>
        <context>TTGTTTCTGG[G/T]AAATTAAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTCTGGAAACAAGATTGGAGCATAAGTAAGACTGGTACATTGTTTCTGG</left_flank>
        <right_flank>AAATTAAAAGTCACCTCACTCACACTTGAAACATCTCACCCAAAAAATAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCACTATTGTTCCCACTAACAACATTATCTTTTCCGTCATTGTTGTGTATCGATACTGCAAAAATGTTCTTGAATTCCTTTTTGTTCTGGATCCTTATCAGTTTAGTTCTGCGGTTATAAAATAACTGTTTTGATTGCCAAGTTCGTGATCATTATGATTTTATAGTTTTGCAGATCACAATGATCAATTTTGACTACAATAACTCGAAAGGTTTTTGCTCCACACTTTCTGTGACCTAAATTCCAGCATCAGCTGAGTATGCCAACTTATCAAAGTGCATGCCAACTTTGCTAGCAGGCTTATCAGCTCATTCCTTTTAATGTTTCCAAACTTTCGATTCTAAATAAAGAAAAAAGAGAGCCTACCAATTGAGGAATTGTGACTTTATTAACAACTGCATCCTTGGCATCCCTAGTGTTTTTGATCTCCCCATTCTCATCGATATTGTCTCTGGAAACAAGATTGGAGCATAAGTAAGACTGGTACATTGTTTCTGGGAAATTAAAAGTCACCTCACTCACACTTGAAACATCTCACCCAAAAAATACCTACTGGAAAAATACAACTATATAGTTGGTAAATGTACTGCTAAACTTAAATATGACTCGAATAAGTTACAGACACTATTATAGATCTCCAGATGTTATCTGAAAACAAAGAAACTAAGGTTGTGACCTATTTTGTCTGAGCCCGCAATAAAGACTTTAAAAAATCATGAATTAATACAAACTGTTTATCGTTTTCGACACATTTCTTGATCTCACAAATTTTAGTTTCTTTATTGGAAAAATAATGAATAAGATGATAGTAATGGTTTAAAGATGCCAACATACTATTTAGGGAAGAAATAGATAAACTGATTGAAAGCTAAATTACCCTTCATATTCTTCCACAGTCTTCAATGTAGTCTTTATCACATCTTCGGGAGCCAAACTAAAAGAGTCTAGAGTCCGAAGACTCCGACGGAGACTGCCGTTTCGCAGCATATCTGAAATCCA</canonical>
            <polymorphic>GCCACTATTGTTCCCACTAACAACATTATCTTTTCCGTCATTGTTGTGTATCGATACTGCAAAAATGTTCTTGAATTCCTTTTTGTTCTGGATCCTTATCAGTTTAGTTCTGCGGTTATAAAATAACTGTTTTGATTGCCAAGTTCGTGATCATTATGATTTTATAGTTTTGCAGATCACAATGATCAATTTTGACTACAATAACTCGAAAGGTTTTTGCTCCACACTTTCTGTGACCTAAATTCCAGCATCAGCTGAGTATGCCAACTTATCAAAGTGCATGCCAACTTTGCTAGCAGGCTTATCAGCTCATTCCTTTTAATGTTTCCAAACTTTCGATTCTAAATAAAGAAAAAAGAGAGCCTACCAATTGAGGAATTGTGACTTTATTAACAACTGCATCCTTGGCATCCCTAGTGTTTTTGATCTCCCCATTCTCATCGATATTGTCTCTGGAAACAAGATTGGAGCATAAGTAAGACTGGTACATTGTTTCTGGKAAATTAAAAGTCACCTCACTCACACTTGAAACATCTCACCCAAAAAATACCTACTGGAAAAATACAACTATATAGTTGGTAAATGTACTGCTAAACTTAAATATGACTCGAATAAGTTACAGACACTATTATAGATCTCCAGATGTTATCTGAAAACAAAGAAACTAAGGTTGTGACCTATTTTGTCTGAGCCCGCAATAAAGACTTTAAAAAATCATGAATTAATACAAACTGTTTATCGTTTTCGACACATTTCTTGATCTCACAAATTTTAGTTTCTTTATTGGAAAAATAATGAATAAGATGATAGTAATGGTTTAAAGATGCCAACATACTATTTAGGGAAGAAATAGATAAACTGATTGAAAGCTAAATTACCCTTCATATTCTTCCACAGTCTTCAATGTAGTCTTTATCACATCTTCGGGAGCCAAACTAAAAGAGTCTAGAGTCCGAAGACTCCGACGGAGACTGCCGTTTCGCAGCATATCTGAAATCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTGAGGAATTGTGACTTTAT</pcr_primer_p1>
		<pcr_primer_p2>TTCGAGTCATATTTAAGTTTAGCA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CAATTGAGGAATTGTGACTTTATTAACAACTGCATCCTTGGCATCCCTAGTGTTTTTGATCTCCCCATTCTCATCGATATTGTCTCTGGAAACAAGATTGGAGCATAAGTAAGACTGGTACATTGTTTCTGGGAAATTAAAAGTCACCTCACTCACACTTGAAACATCTCACCCAAAAAATACCTACTGGAAAAATACAACTATATAGTTGGTAAATGTACTGCTAAACTTAAATATGACTCGAA</canonical_amplicon>
		<polymorphic_amplicon>CAATTGAGGAATTGTGACTTTATTAACAACTGCATCCTTGGCATCCCTAGTGTTTTTGATCTCCCCATTCTCATCGATATTGTCTCTGGAAACAAGATTGGAGCATAAGTAAGACTGGTACATTGTTTCTGGKAAATTAAAAGTCACCTCACTCACACTTGAAACATCTCACCCAAAAAATACCTACTGGAAAAATACAACTATATAGTTGGTAAATGTACTGCTAAACTTAAATATGACTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23314</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>415626</contig_pos>
        <strand>+</strand>
        <context>ATCACTTGAA[A/G]TCGAAGGAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCCCACTTCAACTGGTTTTGCTGAACACCCTCCATACATATCACTTGAA</left_flank>
        <right_flank>TCGAAGGAACATCATTTCGCTGAATATTTTGAAGAGATACTCCTGTCGCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGCGGTGTGTGTTGTGAAATGTTGTTACGACGAACGCATTATGGAGAGAGAGAAAGATAGGACATCATTTATTTACAGACAACAAAATTTATCATGACCTCATTCCATTGCCAGTGTCTTGAACTTGGTGTCTCAACGTTTCTGAAAATTTTCTAGTTTGTTTTGTATCATCAGTCCTAGCTAACCTCATTAAACCGCTTCTTGGTTGTCTCCAAAATCTGATCTTTATAACTCTTCGGCTGTTCTTTAACATTTCCAAGTCCCTGCCGATTGTTTTTGATCTCAGTTGCCACCGGTTCCACATGTCCTTGTTTCTCTTTACCTAATCCTTGTCCCTCTGACCATCCCATAGATTTGAGAAGTTTGAAACCAACGTTTCCAGAATCCAATGGTTTAGGGGCTGAAAGTGTTGGAGCATTTGAGCTAGCTGGCAAATCAAACTTCCGTTGTCCCACTTCAACTGGTTTTGCTGAACACCCTCCATACATATCACTTGAAATCGAAGGAACATCATTTCGCTGAATATTTTGAAGAGATACTCCTGTCGCTGGCCGCTTCCGAATCGGCTGGCTAAGCTCCTCGTCTGGCCGAATCCCATAAGACTTCATCATCTGCTTCAAATTCTTTCTTCTAGCGTATTCGCCTCTTATATTTTTCGCTTGAATCGTTTCAACTTCTTTTTCTTCTTCTACGTATAATCCAGGTTCGCATCCAGGGCAAGTGTTATTTCCAAAATGAACATGAACTTCAAATTGTTCTCCATTGACCAGAATTGAGTCACCTTGGCACAAATCGACTGGCGATCCAGACTGAAAATTAGAACTTTTTAATGGAAAGCTAGGAATAGAAACCTTCACAGTGTTCCCATTCACTTGAATAAAACAGGACGACTCTAACTTTTCGATGGAATAGCACTGCGCTTCCTCAGAAAACCCAAATTCAGCACACTGTCCAGGCATCAACGAATTCGACATGACTACTTCACAATCTCGATCCGAG</canonical>
            <polymorphic>GTGCGGTGTGTGTTGTGAAATGTTGTTACGACGAACGCATTATGGAGAGAGAGAAAGATAGGACATCATTTATTTACAGACAACAAAATTTATCATGACCTCATTCCATTGCCAGTGTCTTGAACTTGGTGTCTCAACGTTTCTGAAAATTTTCTAGTTTGTTTTGTATCATCAGTCCTAGCTAACCTCATTAAACCGCTTCTTGGTTGTCTCCAAAATCTGATCTTTATAACTCTTCGGCTGTTCTTTAACATTTCCAAGTCCCTGCCGATTGTTTTTGATCTCAGTTGCCACCGGTTCCACATGTCCTTGTTTCTCTTTACCTAATCCTTGTCCCTCTGACCATCCCATAGATTTGAGAAGTTTGAAACCAACGTTTCCAGAATCCAATGGTTTAGGGGCTGAAAGTGTTGGAGCATTTGAGCTAGCTGGCAAATCAAACTTCCGTTGTCCCACTTCAACTGGTTTTGCTGAACACCCTCCATACATATCACTTGAARTCGAAGGAACATCATTTCGCTGAATATTTTGAAGAGATACTCCTGTCGCTGGCCGCTTCCGAATCGGCTGGCTAAGCTCCTCGTCTGGCCGAATCCCATAAGACTTCATCATCTGCTTCAAATTCTTTCTTCTAGCGTATTCGCCTCTTATATTTTTCGCTTGAATCGTTTCAACTTCTTTTTCTTCTTCTACGTATAATCCAGGTTCGCATCCAGGGCAAGTGTTATTTCCAAAATGAACATGAACTTCAAATTGTTCTCCATTGACCAGAATTGAGTCACCTTGGCACAAATCGACTGGCGATCCAGACTGAAAATTAGAACTTTTTAATGGAAAGCTAGGAATAGAAACCTTCACAGTGTTCCCATTCACTTGAATAAAACAGGACGACTCTAACTTTTCGATGGAATAGCACTGCGCTTCCTCAGAAAACCCAAATTCAGCACACTGTCCAGGCATCAACGAATTCGACATGACTACTTCACAATCTCGATCCGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTAGGGGCTGAAAGTGTT</pcr_primer_p1>
		<pcr_primer_p2>TACGCTAGAAGAAAGAATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTTTAGGGGCTGAAAGTGTTGGAGCATTTGAGCTAGCTGGCAAATCAAACTTCCGTTGTCCCACTTCAACTGGTTTTGCTGAACACCCTCCATACATATCACTTGAAATCGAAGGAACATCATTTCGCTGAATATTTTGAAGAGATACTCCTGTCGCTGGCCGCTTCCGAATCGGCTGGCTAAGCTCCTCGTCTGGCCGAATCCCATAAGACTTCATCATCTGCTTCAAATTCTTTCTTCTAGCGTA</canonical_amplicon>
		<polymorphic_amplicon>GTTTAGGGGCTGAAAGTGTTGGAGCATTTGAGCTAGCTGGCAAATCAAACTTCCGTTGTCCCACTTCAACTGGTTTTGCTGAACACCCTCCATACATATCACTTGAARTCGAAGGAACATCATTTCGCTGAATATTTTGAAGAGATACTCCTGTCGCTGGCCGCTTCCGAATCGGCTGGCTAAGCTCCTCGTCTGGCCGAATCCCATAAGACTTCATCATCTGCTTCAAATTCTTTCTTCTAGCGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23315</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>483237</contig_pos>
        <strand>+</strand>
        <context>AAACACAGTT[A/G]ARAATCAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAAAAGTTTTTCCAAAAAAAGATATAGATGTGGGTCACGAAACACAGTT</left_flank>
        <right_flank>AAAATCAATTATTTTACGAGAGCGAACTACTTTATACTAATAACGAAACA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTACTGGGTCTCGCTTACTTTGTACTTTTGCTGCAACGCAATCATCTCTGGAATGAATTTGGGATGATGTGACAAATCCGCGTCCATCAGAATGATAAATTCTCCTCTTGCGAACGACAGCCCATGCGAATAGGCGGTACCAAGTCCTAACTTTCCGGCACGTGGCTTTATCAGAATCTTATTTTCTCCGTATTCTTTTTCAAGAAGTTTTGCCACATCTTGAGTACCATCTGGAGAGGCGTCGTCGACAATAATAATCTACAAAATGGAAAAATTAAGGTGAAACTGAAGACTATAAGGACCAACTTCATAGGAAATCCCTTTCAAATATTTTTCAATGAGCCAAATGCAAATCGGCAGATTCTCCTTCTCATTGTAAGTTGGTAGGATGATGGAGTACTTCGGTGTATCCATTTTCTTCTGAAAAAATAAGACGTTTTTCATAACGGAAAAGTTTTTCCAAAAAAAGATATAGATGTGGGTCACGAAACACAGTTAAAAATCAATTATTTTACGAGAGCGAACTACTTTATACTAATAACGAAACAAGAAAAATTATAAAAAGGAAGAAAAACTAAGCAAAAAAGACAGACTATGAAACATCAATTTTTAGCTTTCTTTTGTGTTTTCTTCTCTGGCTGATCGTTATCTTGGCTCTCTTGACTCCCCGGCGCTGACCAAAACTTCATATATTCGCTCTCATCAAAAGTGTCATCGATAACTTCTGTTTTGGTAATCTTGGCTTTCGGTTTGCGTGCTGCCAGCCGCTGTCGTCGCTCTTCTTCGCTCAGTTGCTTCAAGTCGACAGCTGATTGGAAAGTCTGGAGGTTCAATACGTGTTCACAAAAATCTTTTATTTTAAATCAACCTGTCTCGGTTCGCTAGCCGGCACCATAATCGTCGATCCATCAGGCCGAATGAATTTGACTTGATATTTGTGAAGATAGTCTTTCCGGCTAACTTTCCCCAAACTGGCTCTCCAAGCGTTGTTCCGTTCT</canonical>
            <polymorphic>AACTACTGGGTCTCGCTTACTTTGTACTTTTGCTGCAACGCAATCATCTCTGGAATGAATTTGGGATGATGTGACAAATCCGCGTCCATCAGAATGATAAATTCTCCTCTTGCGAACGACAGCCCATGCGAATAGGCGGTACCAAGTCCTAACTTTCCGGCACGTGGCTTTATCAGAATCTTATTTTCTCCGTATTCTTTTTCAAGAAGTTTTGCCACATCTTGAGTACCATCTGGAGAGGCGTCGTCGACAATAATAATCTACAAAATGGAAAAATTAAGGTGAAACTGAAGACTATAAGGACCAACTTCATAGGAAATCCCTTTCAAATATTTTTCAATGAGCCAAATGCAAATCGGCAGATTCTCCTTCTCATTGTAAGTTGGTAGGATGATGGAGTACTTCGGTGTATCCATTTTCTTCTGAAAAAATAAGACGTTTTTCATAACGGAAAAGTTTTTCCAAAAAAAGATATAGATGTGGGTCACGAAACACAGTTRAAAATCAATTATTTTACGAGAGCGAACTACTTTATACTAATAACGAAACAAGAAAAATTATAAAAAGGAAGAAAAACTAAGCAAAAAAGACAGACTATGAAACATCAATTTTTAGCTTTCTTTTGTGTTTTCTTCTCTGGCTGATCGTTATCTTGGCTCTCTTGACTCCCCGGCGCTGACCAAAACTTCATATATTCGCTCTCATCAAAAGTGTCATCGATAACTTCTGTTTTGGTAATCTTGGCTTTCGGTTTGCGTGCTGCCAGCCGCTGTCGTCGCTCTTCTTCGCTCAGTTGCTTCAAGTCGACAGCTGATTGGAAAGTCTGGAGGTTCAATACGTGTTCACAAAAATCTTTTATTTTAAATCAACCTGTCTCGGTTCGCTAGCCGGCACCATAATCGTCGATCCATCAGGCCGAATGAATTTGACTTGATATTTGTGAAGATAGTCTTTCCGGCTAACTTTCCCCAAACTGGCTCTCCAAGCGTTGTTCCGTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>363 277 221 139</canonical_bands>
                <polymorphic_bands>584 277 139</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAGTTGGTAGGATGATGGAGTA</pcr_primer_p1>
		<pcr_primer_p2>ACACAAAAGAAAGCTAAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAGTTGGTAGGATGATGGAGTACTTCGGTGTATCCATTTTCTTCTGAAAAAATAAGACGTTTTTCATAACGGAAAAGTTTTTCCAAAAAAAGATATAGATGTGGGTCACGAAACACAGTTAAAAATCAATTATTTTACGAGAGCGAACTACTTTATACTAATAACGAAACAAGAAAAATTATAAAAAGGAAGAAAAACTAAGCAAAAAAGACAGACTATGAAACATCAATTTTTAGCTTTCTTTTGTGT</canonical_amplicon>
		<polymorphic_amplicon>TAAGTTGGTAGGATGATGGAGTACTTCGGTGTATCCATTTTCTTCTGAAAAAATAAGACGTTTTTCATAACGGAAAAGTTTTTCCAAAAAAAGATATAGATGTGGGTCACGAAACACAGTTRAAAATCAATTATTTTACGAGAGCGAACTACTTTATACTAATAACGAAACAAGAAAAATTATAAAAAGGAAGAAAAACTAAGCAAAAAAGACAGACTATGAAACATCAATTTTTAGCTTTCTTTTGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23316</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>483290</contig_pos>
        <strand></strand>
        <context>ACGAAACAAG[A/G]AAAATTATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCAATTATTTTACGAGAGCGAACTACTTTATACTAATAACGAAACAAG</left_flank>
        <right_flank>AAAATTATAAAAAGGAAGAAAAACTAAGCAAAAAAGACAGACTATGAAAC</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGAATTTGGGATGATGTGACAAATCCGCGTCCATCAGAATGATAAATTCTCCTCTTGCGAACGACAGCCCATGCGAATAGGCGGTACCAAGTCCTAACTTTCCGGCACGTGGCTTTATCAGAATCTTATTTTCTCCGTATTCTTTTTCAAGAAGTTTTGCCACATCTTGAGTACCATCTGGAGAGGCGTCGTCGACAATAATAATCTACAAAATGGAAAAATTAAGGTGAAACTGAAGACTATAAGGACCAACTTCATAGGAAATCCCTTTCAAATATTTTTCAATGAGCCAAATGCAAATCGGCAGATTCTCCTTCTCATTGTAAGTTGGTAGGATGATGGAGTACTTCGGTGTATCCATTTTCTTCTGAAAAAATAAGACGTTTTTCATAACGGAAAAGTTTTTCCAAAAAAAGATATAGATGTGGGTCACGAAACACAGTTAAAAATCAATTATTTTACGAGAGCGAACTACTTTATACTAATAACGAAACAAGAAAAATTATAAAAAGGAAGAAAAACTAAGCAAAAAAGACAGACTATGAAACATCAATTTTTAGCTTTCTTTTGTGTTTTCTTCTCTGGCTGATCGTTATCTTGGCTCTCTTGACTCCCCGGCGCTGACCAAAACTTCATATATTCGCTCTCATCAAAAGTGTCATCGATAACTTCTGTTTTGGTAATCTTGGCTTTCGGTTTGCGTGCTGCCAGCCGCTGTCGTCGCTCTTCTTCGCTCAGTTGCTTCAAGTCGACAGCTGATTGGAAAGTCTGGAGGTTCAATACGTGTTCACAAAAATCTTTTATTTTAAATCAACCTGTCTCGGTTCGCTAGCCGGCACCATAATCGTCGATCCATCAGGCCGAATGAATTTGACTTGATATTTGTGAAGATAGTCTTTCCGGCTAACTTTCCCCAAACTGGCTCTCCAAGCGTTGTTCCGTTCTGAAAAAATATTTTTAAGTATAATTACGAAATCTACTATGTCAAACCTGCTATG</canonical>
            <polymorphic>AATGAATTTGGGATGATGTGACAAATCCGCGTCCATCAGAATGATAAATTCTCCTCTTGCGAACGACAGCCCATGCGAATAGGCGGTACCAAGTCCTAACTTTCCGGCACGTGGCTTTATCAGAATCTTATTTTCTCCGTATTCTTTTTCAAGAAGTTTTGCCACATCTTGAGTACCATCTGGAGAGGCGTCGTCGACAATAATAATCTACAAAATGGAAAAATTAAGGTGAAACTGAAGACTATAAGGACCAACTTCATAGGAAATCCCTTTCAAATATTTTTCAATGAGCCAAATGCAAATCGGCAGATTCTCCTTCTCATTGTAAGTTGGTAGGATGATGGAGTACTTCGGTGTATCCATTTTCTTCTGAAAAAATAAGACGTTTTTCATAACGGAAAAGTTTTTCCAAAAAAAGATATAGATGTGGGTCACGAAACACAGTTAAAAATCAATTATTTTACGAGAGCGAACTACTTTATACTAATAACGAAACAAGRAAAATTATAAAAAGGAAGAAAAACTAAGCAAAAAAGACAGACTATGAAACATCAATTTTTAGCTTTCTTTTGTGTTTTCTTCTCTGGCTGATCGTTATCTTGGCTCTCTTGACTCCCCGGCGCTGACCAAAACTTCATATATTCGCTCTCATCAAAAGTGTCATCGATAACTTCTGTTTTGGTAATCTTGGCTTTCGGTTTGCGTGCTGCCAGCCGCTGTCGTCGCTCTTCTTCGCTCAGTTGCTTCAAGTCGACAGCTGATTGGAAAGTCTGGAGGTTCAATACGTGTTCACAAAAATCTTTTATTTTAAATCAACCTGTCTCGGTTCGCTAGCCGGCACCATAATCGTCGATCCATCAGGCCGAATGAATTTGACTTGATATTTGTGAAGATAGTCTTTCCGGCTAACTTTCCCCAAACTGGCTCTCCAAGCGTTGTTCCGTTCTGAAAAAATATTTTTAAGTATAATTACGAAATCTACTATGTCAAACCTGCTATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGTTGGTAGGATGATGGAGTA</pcr_primer_p1>
		<pcr_primer_p2>ACACAAAAGAAAGCTAAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAGTTGGTAGGATGATGGAGTACTTCGGTGTATCCATTTTCTTCTGAAAAAATAAGACGTTTTTCATAACGGAAAAGTTTTTCCAAAAAAAGATATAGATGTGGGTCACGAAACACAGTTAAAAATCAATTATTTTACGAGAGCGAACTACTTTATACTAATAACGAAACAAGAAAAATTATAAAAAGGAAGAAAAACTAAGCAAAAAAGACAGACTATGAAACATCAATTTTTAGCTTTCTTTTGTGT</canonical_amplicon>
		<polymorphic_amplicon>TAAGTTGGTAGGATGATGGAGTACTTCGGTGTATCCATTTTCTTCTGAAAAAATAAGACGTTTTTCATAACGGAAAAGTTTTTCCAAAAAAAGATATAGATGTGGGTCACGAAACACAGTTAAAAATCAATTATTTTACGAGAGCGAACTACTTTATACTAATAACGAAACAAGRAAAATTATAAAAAGGAAGAAAAACTAAGCAAAAAAGACAGACTATGAAACATCAATTTTTAGCTTTCTTTTGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23317</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>35416</contig_pos>
        <strand>+</strand>
        <context>AACCATACAA[A/T]WAAGAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTAAGAAATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAA</left_flank>
        <right_flank>AAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTCTCCCCCTCCCTTGTGTACGACAATCGCTCTCCTCTCTCTCGGGGCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATCTTTTTTGATTTTTTTGTTGGTGTTTGGGATGGATTTGGAGTGTTGGGGAATGAGATTTTAAATTGTTTCTAACTTTTTTTTGTGGAGAGGTTGAAAATATGGGGAAATGAAAAAAGGAAGTTTTGAAAGCGAAAGCAATTTCTTATTTTTTGAATTTTCGAATTTTCGATTTTTGAATTCCTGAATTTCAAAATTTTGAAATTTTAAGAATTCTTGAATTCCAGATTTTCGAAACTACAAAATTTCAGAGTTACTCGATTTCAAATATGTAAATTTTTTTGTAGAACTTTTGAATCCAGAAAATTGAAATTTAACTATAAAAACTTAAGAAATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAAAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACATTTGAAACATTAGGTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGGCGGCCGACAGCTGACCGAACAAACAATTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTCTATGAATGAGGGGAAATGCCATTTTCTTTGGATTTTTCTAGAAATTTCGACATTTTTTCGAATAAAATTTGTTTCGGATTGTTAACGTTCTTTTTTTTCCCACAGCCGATCATTATTTAGGTTAACATAAACAATTAAAAAACCTGTCTTTTCACATGCTCAACAAATAATAAAAAATCGGGTCAATGATAAATGCAAACAGTGTAAACTTTTGATAGTAGAACAAAAAAAAAATGAGAGAGATTATTTGGAAGATGAGGAGGTAAACTAGAAACTCAAGTAGAGATTAGAAGA</canonical>
            <polymorphic>TCCTCTCCCCCTCCCTTGTGTACGACAATCGCTCTCCTCTCTCTCGGGGCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATCTTTTTTGATTTTTTTGTTGGTGTTTGGGATGGATTTGGAGTGTTGGGGAATGAGATTTTAAATTGTTTCTAACTTTTTTTTGTGGAGAGGTTGAAAATATGGGGAAATGAAAAAAGGAAGTTTTGAAAGCGAAAGCAATTTCTTATTTTTTGAATTTTCGAATTTTCGATTTTTGAATTCCTGAATTTCAAAATTTTGAAATTTTAAGAATTCTTGAATTCCAGATTTTCGAAACTACAAAATTTCAGAGTTACTCGATTTCAAATATGTAAATTTTTTTGTAGAACTTTTGAATCCAGAAAATTGAAATTTAACTATAAAAACTTAAGAAATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAWAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACATTTGAAACATTAGGTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGGCGGCCGACAGCTGACCGAACAAACAATTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTCTATGAATGAGGGGAAATGCCATTTTCTTTGGATTTTTCTAGAAATTTCGACATTTTTTCGAATAAAATTTGTTTCGGATTGTTAACGTTCTTTTTTTTCCCACAGCCGATCATTATTTAGGTTAACATAAACAATTAAAAAACCTGTCTTTTCACATGCTCAACAAATAATAAAAAATCGGGTCAATGATAAATGCAAACAGTGTAAACTTTTGATAGTAGAACAAAAAAAAAATGAGAGAGATTATTTGGAAGATGAGGAGGTAAACTAGAAACTCAAGTAGAGATTAGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCGAAACTACAAAATTTCA</pcr_primer_p1>
		<pcr_primer_p2>CGAATGGTCTAGTGGTATGATT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCGAAACTACAAAATTTCAGAGTTACTCGATTTCAAATATGTAAATTTTTTTGTAGAACTTTTGAATCCAGAAAATTGAAATTTAACTATAAAAACTTAAGAAATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAAAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCG</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCGAAACTACAAAATTTCAGAGTTACTCGATTTCAAATATGTAAATTTTTTTGTAGAACTTTTGAATCCAGAAAATTGAAATTTAACTATAAAAACTTAAGAAATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAWAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23318</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>35417</contig_pos>
        <strand>+</strand>
        <context>ACCATACAAW[A/T]AAGAAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAAGAAATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAA</left_flank>
        <right_flank>AAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCTCCCCCTCCCTTGTGTACGACAATCGCTCTCCTCTCTCTCGGGGCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATCTTTTTTGATTTTTTTGTTGGTGTTTGGGATGGATTTGGAGTGTTGGGGAATGAGATTTTAAATTGTTTCTAACTTTTTTTTGTGGAGAGGTTGAAAATATGGGGAAATGAAAAAAGGAAGTTTTGAAAGCGAAAGCAATTTCTTATTTTTTGAATTTTCGAATTTTCGATTTTTGAATTCCTGAATTTCAAAATTTTGAAATTTTAAGAATTCTTGAATTCCAGATTTTCGAAACTACAAAATTTCAGAGTTACTCGATTTCAAATATGTAAATTTTTTTGTAGAACTTTTGAATCCAGAAAATTGAAATTTAACTATAAAAACTTAAGAAATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAAAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACATTTGAAACATTAGGTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGGCGGCCGACAGCTGACCGAACAAACAATTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTCTATGAATGAGGGGAAATGCCATTTTCTTTGGATTTTTCTAGAAATTTCGACATTTTTTCGAATAAAATTTGTTTCGGATTGTTAACGTTCTTTTTTTTCCCACAGCCGATCATTATTTAGGTTAACATAAACAATTAAAAAACCTGTCTTTTCACATGCTCAACAAATAATAAAAAATCGGGTCAATGATAAATGCAAACAGTGTAAACTTTTGATAGTAGAACAAAAAAAAAATGAGAGAGATTATTTGGAAGATGAGGAGGTAAACTAGAAACTCAAGTAGAGATTAGAAGAG</canonical>
            <polymorphic>CCTCTCCCCCTCCCTTGTGTACGACAATCGCTCTCCTCTCTCTCGGGGCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATCTTTTTTGATTTTTTTGTTGGTGTTTGGGATGGATTTGGAGTGTTGGGGAATGAGATTTTAAATTGTTTCTAACTTTTTTTTGTGGAGAGGTTGAAAATATGGGGAAATGAAAAAAGGAAGTTTTGAAAGCGAAAGCAATTTCTTATTTTTTGAATTTTCGAATTTTCGATTTTTGAATTCCTGAATTTCAAAATTTTGAAATTTTAAGAATTCTTGAATTCCAGATTTTCGAAACTACAAAATTTCAGAGTTACTCGATTTCAAATATGTAAATTTTTTTGTAGAACTTTTGAATCCAGAAAATTGAAATTTAACTATAAAAACTTAAGAAATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAAWAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACATTTGAAACATTAGGTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGGCGGCCGACAGCTGACCGAACAAACAATTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTCTATGAATGAGGGGAAATGCCATTTTCTTTGGATTTTTCTAGAAATTTCGACATTTTTTCGAATAAAATTTGTTTCGGATTGTTAACGTTCTTTTTTTTCCCACAGCCGATCATTATTTAGGTTAACATAAACAATTAAAAAACCTGTCTTTTCACATGCTCAACAAATAATAAAAAATCGGGTCAATGATAAATGCAAACAGTGTAAACTTTTGATAGTAGAACAAAAAAAAAATGAGAGAGATTATTTGGAAGATGAGGAGGTAAACTAGAAACTCAAGTAGAGATTAGAAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCGAAACTACAAAATTTCA</pcr_primer_p1>
		<pcr_primer_p2>CGAATGGTCTAGTGGTATGATT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCGAAACTACAAAATTTCAGAGTTACTCGATTTCAAATATGTAAATTTTTTTGTAGAACTTTTGAATCCAGAAAATTGAAATTTAACTATAAAAACTTAAGAAATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAAAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCG</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCGAAACTACAAAATTTCAGAGTTACTCGATTTCAAATATGTAAATTTTTTTGTAGAACTTTTGAATCCAGAAAATTGAAATTTAACTATAAAAACTTAAGAAATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAAWAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23319</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>35511</contig_pos>
        <strand>+</strand>
        <context>GGCCACRTTT[G/T]AAACATTAKG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACATTT</left_flank>
        <right_flank>AAACATTAGGTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGGGGTTCGAGTCCCCTAGGTGGCTTGATCTTTTTTGATTTTTTTGTTGGTGTTTGGGATGGATTTGGAGTGTTGGGGAATGAGATTTTAAATTGTTTCTAACTTTTTTTTGTGGAGAGGTTGAAAATATGGGGAAATGAAAAAAGGAAGTTTTGAAAGCGAAAGCAATTTCTTATTTTTTGAATTTTCGAATTTTCGATTTTTGAATTCCTGAATTTCAAAATTTTGAAATTTTAAGAATTCTTGAATTCCAGATTTTCGAAACTACAAAATTTCAGAGTTACTCGATTTCAAATATGTAAATTTTTTTGTAGAACTTTTGAATCCAGAAAATTGAAATTTAACTATAAAAACTTAAGAAATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAAAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACATTTGAAACATTAGGTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGGCGGCCGACAGCTGACCGAACAAACAATTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTCTATGAATGAGGGGAAATGCCATTTTCTTTGGATTTTTCTAGAAATTTCGACATTTTTTCGAATAAAATTTGTTTCGGATTGTTAACGTTCTTTTTTTTCCCACAGCCGATCATTATTTAGGTTAACATAAACAATTAAAAAACCTGTCTTTTCACATGCTCAACAAATAATAAAAAATCGGGTCAATGATAAATGCAAACAGTGTAAACTTTTGATAGTAGAACAAAAAAAAAATGAGAGAGATTATTTGGAAGATGAGGAGGTAAACTAGAAACTCAAGTAGAGATTAGAAGAGAATTTAGTAAATAACATGAAAAGTTTTTGGTATAAAAGTGAAGGATGAGCAATGAGAAGGAGCATAGAAGATGCGTTGTGGATTCTTGGTATTC</canonical>
            <polymorphic>CAGGGGTTCGAGTCCCCTAGGTGGCTTGATCTTTTTTGATTTTTTTGTTGGTGTTTGGGATGGATTTGGAGTGTTGGGGAATGAGATTTTAAATTGTTTCTAACTTTTTTTTGTGGAGAGGTTGAAAATATGGGGAAATGAAAAAAGGAAGTTTTGAAAGCGAAAGCAATTTCTTATTTTTTGAATTTTCGAATTTTCGATTTTTGAATTCCTGAATTTCAAAATTTTGAAATTTTAAGAATTCTTGAATTCCAGATTTTCGAAACTACAAAATTTCAGAGTTACTCGATTTCAAATATGTAAATTTTTTTGTAGAACTTTTGAATCCAGAAAATTGAAATTTAACTATAAAAACTTAAGAAATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAAAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACATTTKAAACATTAGGTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGGCGGCCGACAGCTGACCGAACAAACAATTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTCTATGAATGAGGGGAAATGCCATTTTCTTTGGATTTTTCTAGAAATTTCGACATTTTTTCGAATAAAATTTGTTTCGGATTGTTAACGTTCTTTTTTTTCCCACAGCCGATCATTATTTAGGTTAACATAAACAATTAAAAAACCTGTCTTTTCACATGCTCAACAAATAATAAAAAATCGGGTCAATGATAAATGCAAACAGTGTAAACTTTTGATAGTAGAACAAAAAAAAAATGAGAGAGATTATTTGGAAGATGAGGAGGTAAACTAGAAACTCAAGTAGAGATTAGAAGAGAATTTAGTAAATAACATGAAAAGTTTTTGGTATAAAAGTGAAGGATGAGCAATGAGAAGGAGCATAGAAGATGCGTTGTGGATTCTTGGTATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATGCACATTCCAAAAGTTAC</pcr_primer_p1>
		<pcr_primer_p2>GAATTCTTATACACTCCAAGGAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAAAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACATTTGAAACATTAGGTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGGCGGCCGACAGCTGACCGAACAAACAATTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTC</canonical_amplicon>
		<polymorphic_amplicon>AATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAAAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACATTTKAAACATTAGGTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGGCGGCCGACAGCTGACCGAACAAACAATTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23320</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>35520</contig_pos>
        <strand>+</strand>
        <context>TKAAACATTA[G/T]GTGGAGGCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCAAAGCGAGAATCATACCACTAGACCATTCGGCCACATTTGAAACATTA</left_flank>
        <right_flank>GTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGGCGGCCGACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTCCCCTAGGTGGCTTGATCTTTTTTGATTTTTTTGTTGGTGTTTGGGATGGATTTGGAGTGTTGGGGAATGAGATTTTAAATTGTTTCTAACTTTTTTTTGTGGAGAGGTTGAAAATATGGGGAAATGAAAAAAGGAAGTTTTGAAAGCGAAAGCAATTTCTTATTTTTTGAATTTTCGAATTTTCGATTTTTGAATTCCTGAATTTCAAAATTTTGAAATTTTAAGAATTCTTGAATTCCAGATTTTCGAAACTACAAAATTTCAGAGTTACTCGATTTCAAATATGTAAATTTTTTTGTAGAACTTTTGAATCCAGAAAATTGAAATTTAACTATAAAAACTTAAGAAATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAAAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACATTTGAAACATTAGGTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGGCGGCCGACAGCTGACCGAACAAACAATTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTCTATGAATGAGGGGAAATGCCATTTTCTTTGGATTTTTCTAGAAATTTCGACATTTTTTCGAATAAAATTTGTTTCGGATTGTTAACGTTCTTTTTTTTCCCACAGCCGATCATTATTTAGGTTAACATAAACAATTAAAAAACCTGTCTTTTCACATGCTCAACAAATAATAAAAAATCGGGTCAATGATAAATGCAAACAGTGTAAACTTTTGATAGTAGAACAAAAAAAAAATGAGAGAGATTATTTGGAAGATGAGGAGGTAAACTAGAAACTCAAGTAGAGATTAGAAGAGAATTTAGTAAATAACATGAAAAGTTTTTGGTATAAAAGTGAAGGATGAGCAATGAGAAGGAGCATAGAAGATGCGTTGTGGATTCTTGGTATTCGCTTTGGTA</canonical>
            <polymorphic>GAGTCCCCTAGGTGGCTTGATCTTTTTTGATTTTTTTGTTGGTGTTTGGGATGGATTTGGAGTGTTGGGGAATGAGATTTTAAATTGTTTCTAACTTTTTTTTGTGGAGAGGTTGAAAATATGGGGAAATGAAAAAAGGAAGTTTTGAAAGCGAAAGCAATTTCTTATTTTTTGAATTTTCGAATTTTCGATTTTTGAATTCCTGAATTTCAAAATTTTGAAATTTTAAGAATTCTTGAATTCCAGATTTTCGAAACTACAAAATTTCAGAGTTACTCGATTTCAAATATGTAAATTTTTTTGTAGAACTTTTGAATCCAGAAAATTGAAATTTAACTATAAAAACTTAAGAAATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAAAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACATTTGAAACATTAKGTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGGCGGCCGACAGCTGACCGAACAAACAATTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTCTATGAATGAGGGGAAATGCCATTTTCTTTGGATTTTTCTAGAAATTTCGACATTTTTTCGAATAAAATTTGTTTCGGATTGTTAACGTTCTTTTTTTTCCCACAGCCGATCATTATTTAGGTTAACATAAACAATTAAAAAACCTGTCTTTTCACATGCTCAACAAATAATAAAAAATCGGGTCAATGATAAATGCAAACAGTGTAAACTTTTGATAGTAGAACAAAAAAAAAATGAGAGAGATTATTTGGAAGATGAGGAGGTAAACTAGAAACTCAAGTAGAGATTAGAAGAGAATTTAGTAAATAACATGAAAAGTTTTTGGTATAAAAGTGAAGGATGAGCAATGAGAAGGAGCATAGAAGATGCGTTGTGGATTCTTGGTATTCGCTTTGGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATGCACATTCCAAAAGTTAC</pcr_primer_p1>
		<pcr_primer_p2>GAATTCTTATACACTCCAAGGAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAAAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACATTTGAAACATTAGGTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGGCGGCCGACAGCTGACCGAACAAACAATTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTC</canonical_amplicon>
		<polymorphic_amplicon>AATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAAAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACATTTGAAACATTAKGTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGGCGGCCGACAGCTGACCGAACAAACAATTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23321</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>35546</contig_pos>
        <strand>+</strand>
        <context>GAAGGAGGGT[A/G]TGGACACCGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTCGGCCACATTTGAAACATTAGGTGGAGGCAGTATACGAAGGAGGGT</left_flank>
        <right_flank>TGGACACCGGCCGGGCGGCCGACAGCTGACCGAACAAACAATTTTTCCTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGATTTTTTTGTTGGTGTTTGGGATGGATTTGGAGTGTTGGGGAATGAGATTTTAAATTGTTTCTAACTTTTTTTTGTGGAGAGGTTGAAAATATGGGGAAATGAAAAAAGGAAGTTTTGAAAGCGAAAGCAATTTCTTATTTTTTGAATTTTCGAATTTTCGATTTTTGAATTCCTGAATTTCAAAATTTTGAAATTTTAAGAATTCTTGAATTCCAGATTTTCGAAACTACAAAATTTCAGAGTTACTCGATTTCAAATATGTAAATTTTTTTGTAGAACTTTTGAATCCAGAAAATTGAAATTTAACTATAAAAACTTAAGAAATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAAAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACATTTGAAACATTAGGTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGGCGGCCGACAGCTGACCGAACAAACAATTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTCTATGAATGAGGGGAAATGCCATTTTCTTTGGATTTTTCTAGAAATTTCGACATTTTTTCGAATAAAATTTGTTTCGGATTGTTAACGTTCTTTTTTTTCCCACAGCCGATCATTATTTAGGTTAACATAAACAATTAAAAAACCTGTCTTTTCACATGCTCAACAAATAATAAAAAATCGGGTCAATGATAAATGCAAACAGTGTAAACTTTTGATAGTAGAACAAAAAAAAAATGAGAGAGATTATTTGGAAGATGAGGAGGTAAACTAGAAACTCAAGTAGAGATTAGAAGAGAATTTAGTAAATAACATGAAAAGTTTTTGGTATAAAAGTGAAGGATGAGCAATGAGAAGGAGCATAGAAGATGCGTTGTGGATTCTTGGTATTCGCTTTGGTATCGTTGGTGGCTGTTGAGGTGAGATT</canonical>
            <polymorphic>TTGATTTTTTTGTTGGTGTTTGGGATGGATTTGGAGTGTTGGGGAATGAGATTTTAAATTGTTTCTAACTTTTTTTTGTGGAGAGGTTGAAAATATGGGGAAATGAAAAAAGGAAGTTTTGAAAGCGAAAGCAATTTCTTATTTTTTGAATTTTCGAATTTTCGATTTTTGAATTCCTGAATTTCAAAATTTTGAAATTTTAAGAATTCTTGAATTCCAGATTTTCGAAACTACAAAATTTCAGAGTTACTCGATTTCAAATATGTAAATTTTTTTGTAGAACTTTTGAATCCAGAAAATTGAAATTTAACTATAAAAACTTAAGAAATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAAAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACATTTGAAACATTAGGTGGAGGCAGTATACGAAGGAGGGTRTGGACACCGGCCGGGCGGCCGACAGCTGACCGAACAAACAATTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTCTATGAATGAGGGGAAATGCCATTTTCTTTGGATTTTTCTAGAAATTTCGACATTTTTTCGAATAAAATTTGTTTCGGATTGTTAACGTTCTTTTTTTTCCCACAGCCGATCATTATTTAGGTTAACATAAACAATTAAAAAACCTGTCTTTTCACATGCTCAACAAATAATAAAAAATCGGGTCAATGATAAATGCAAACAGTGTAAACTTTTGATAGTAGAACAAAAAAAAAATGAGAGAGATTATTTGGAAGATGAGGAGGTAAACTAGAAACTCAAGTAGAGATTAGAAGAGAATTTAGTAAATAACATGAAAAGTTTTTGGTATAAAAGTGAAGGATGAGCAATGAGAAGGAGCATAGAAGATGCGTTGTGGATTCTTGGTATTCGCTTTGGTATCGTTGGTGGCTGTTGAGGTGAGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATGCACATTCCAAAAGTTAC</pcr_primer_p1>
		<pcr_primer_p2>GAATTCTTATACACTCCAAGGAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAAAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACATTTGAAACATTAGGTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGGCGGCCGACAGCTGACCGAACAAACAATTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTC</canonical_amplicon>
		<polymorphic_amplicon>AATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAAAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACATTTGAAACATTAGGTGGAGGCAGTATACGAAGGAGGGTRTGGACACCGGCCGGGCGGCCGACAGCTGACCGAACAAACAATTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23322</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>35571</contig_pos>
        <strand>+</strand>
        <context>GCGGCCGACA[A/G]CTGACCGAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGGCGGCCGACA</left_flank>
        <right_flank>CTGACCGAACAAACAATTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGATTTGGAGTGTTGGGGAATGAGATTTTAAATTGTTTCTAACTTTTTTTTGTGGAGAGGTTGAAAATATGGGGAAATGAAAAAAGGAAGTTTTGAAAGCGAAAGCAATTTCTTATTTTTTGAATTTTCGAATTTTCGATTTTTGAATTCCTGAATTTCAAAATTTTGAAATTTTAAGAATTCTTGAATTCCAGATTTTCGAAACTACAAAATTTCAGAGTTACTCGATTTCAAATATGTAAATTTTTTTGTAGAACTTTTGAATCCAGAAAATTGAAATTTAACTATAAAAACTTAAGAAATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAAAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACATTTGAAACATTAGGTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGGCGGCCGACAGCTGACCGAACAAACAATTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTCTATGAATGAGGGGAAATGCCATTTTCTTTGGATTTTTCTAGAAATTTCGACATTTTTTCGAATAAAATTTGTTTCGGATTGTTAACGTTCTTTTTTTTCCCACAGCCGATCATTATTTAGGTTAACATAAACAATTAAAAAACCTGTCTTTTCACATGCTCAACAAATAATAAAAAATCGGGTCAATGATAAATGCAAACAGTGTAAACTTTTGATAGTAGAACAAAAAAAAAATGAGAGAGATTATTTGGAAGATGAGGAGGTAAACTAGAAACTCAAGTAGAGATTAGAAGAGAATTTAGTAAATAACATGAAAAGTTTTTGGTATAAAAGTGAAGGATGAGCAATGAGAAGGAGCATAGAAGATGCGTTGTGGATTCTTGGTATTCGCTTTGGTATCGTTGGTGGCTGTTGAGGTGAGATTTTTGGACTTCTCGAATTAAAAAATC</canonical>
            <polymorphic>TGGATTTGGAGTGTTGGGGAATGAGATTTTAAATTGTTTCTAACTTTTTTTTGTGGAGAGGTTGAAAATATGGGGAAATGAAAAAAGGAAGTTTTGAAAGCGAAAGCAATTTCTTATTTTTTGAATTTTCGAATTTTCGATTTTTGAATTCCTGAATTTCAAAATTTTGAAATTTTAAGAATTCTTGAATTCCAGATTTTCGAAACTACAAAATTTCAGAGTTACTCGATTTCAAATATGTAAATTTTTTTGTAGAACTTTTGAATCCAGAAAATTGAAATTTAACTATAAAAACTTAAGAAATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAAAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACATTTGAAACATTAGGTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGGCGGCCGACARCTGACCGAACAAACAATTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTCTATGAATGAGGGGAAATGCCATTTTCTTTGGATTTTTCTAGAAATTTCGACATTTTTTCGAATAAAATTTGTTTCGGATTGTTAACGTTCTTTTTTTTCCCACAGCCGATCATTATTTAGGTTAACATAAACAATTAAAAAACCTGTCTTTTCACATGCTCAACAAATAATAAAAAATCGGGTCAATGATAAATGCAAACAGTGTAAACTTTTGATAGTAGAACAAAAAAAAAATGAGAGAGATTATTTGGAAGATGAGGAGGTAAACTAGAAACTCAAGTAGAGATTAGAAGAGAATTTAGTAAATAACATGAAAAGTTTTTGGTATAAAAGTGAAGGATGAGCAATGAGAAGGAGCATAGAAGATGCGTTGTGGATTCTTGGTATTCGCTTTGGTATCGTTGGTGGCTGTTGAGGTGAGATTTTTGGACTTCTCGAATTAAAAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>364 303 156 67 54 41 8 7</canonical_bands>
                <polymorphic_bands>364 303 163 67 54 41 8</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTACATCTCAACGAAACCATAC</pcr_primer_p1>
		<pcr_primer_p2>CATTTCCCCTCATTCATAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTACATCTCAACGAAACCATACAAAAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACATTTGAAACATTAGGTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGGCGGCCGACAGCTGACCGAACAAACAATTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTCTATGAATGAGGGGAAATG</canonical_amplicon>
		<polymorphic_amplicon>GTTACATCTCAACGAAACCATACAAAAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACATTTGAAACATTAGGTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGGCGGCCGACARCTGACCGAACAAACAATTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTCTATGAATGAGGGGAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23323</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>35588</contig_pos>
        <strand>+</strand>
        <context>GAACAAACAA[G/T]TTTTCCTCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGGAGGGTATGGACACCGGCCGGGCGGCCGACAGCTGACCGAACAAACAA</left_flank>
        <right_flank>TTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTCTATGAATGAGGGGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAATGAGATTTTAAATTGTTTCTAACTTTTTTTTGTGGAGAGGTTGAAAATATGGGGAAATGAAAAAAGGAAGTTTTGAAAGCGAAAGCAATTTCTTATTTTTTGAATTTTCGAATTTTCGATTTTTGAATTCCTGAATTTCAAAATTTTGAAATTTTAAGAATTCTTGAATTCCAGATTTTCGAAACTACAAAATTTCAGAGTTACTCGATTTCAAATATGTAAATTTTTTTGTAGAACTTTTGAATCCAGAAAATTGAAATTTAACTATAAAAACTTAAGAAATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAAAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACATTTGAAACATTAGGTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGGCGGCCGACAGCTGACCGAACAAACAATTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTCTATGAATGAGGGGAAATGCCATTTTCTTTGGATTTTTCTAGAAATTTCGACATTTTTTCGAATAAAATTTGTTTCGGATTGTTAACGTTCTTTTTTTTCCCACAGCCGATCATTATTTAGGTTAACATAAACAATTAAAAAACCTGTCTTTTCACATGCTCAACAAATAATAAAAAATCGGGTCAATGATAAATGCAAACAGTGTAAACTTTTGATAGTAGAACAAAAAAAAAATGAGAGAGATTATTTGGAAGATGAGGAGGTAAACTAGAAACTCAAGTAGAGATTAGAAGAGAATTTAGTAAATAACATGAAAAGTTTTTGGTATAAAAGTGAAGGATGAGCAATGAGAAGGAGCATAGAAGATGCGTTGTGGATTCTTGGTATTCGCTTTGGTATCGTTGGTGGCTGTTGAGGTGAGATTTTTGGACTTCTCGAATTAAAAAATCTTGGATTTTCGGATTGT</canonical>
            <polymorphic>GGAATGAGATTTTAAATTGTTTCTAACTTTTTTTTGTGGAGAGGTTGAAAATATGGGGAAATGAAAAAAGGAAGTTTTGAAAGCGAAAGCAATTTCTTATTTTTTGAATTTTCGAATTTTCGATTTTTGAATTCCTGAATTTCAAAATTTTGAAATTTTAAGAATTCTTGAATTCCAGATTTTCGAAACTACAAAATTTCAGAGTTACTCGATTTCAAATATGTAAATTTTTTTGTAGAACTTTTGAATCCAGAAAATTGAAATTTAACTATAAAAACTTAAGAAATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAAAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACATTTGAAACATTAGGTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGGCGGCCGACAGCTGACCGAACAAACAAKTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTCTATGAATGAGGGGAAATGCCATTTTCTTTGGATTTTTCTAGAAATTTCGACATTTTTTCGAATAAAATTTGTTTCGGATTGTTAACGTTCTTTTTTTTCCCACAGCCGATCATTATTTAGGTTAACATAAACAATTAAAAAACCTGTCTTTTCACATGCTCAACAAATAATAAAAAATCGGGTCAATGATAAATGCAAACAGTGTAAACTTTTGATAGTAGAACAAAAAAAAAATGAGAGAGATTATTTGGAAGATGAGGAGGTAAACTAGAAACTCAAGTAGAGATTAGAAGAGAATTTAGTAAATAACATGAAAAGTTTTTGGTATAAAAGTGAAGGATGAGCAATGAGAAGGAGCATAGAAGATGCGTTGTGGATTCTTGGTATTCGCTTTGGTATCGTTGGTGGCTGTTGAGGTGAGATTTTTGGACTTCTCGAATTAAAAAATCTTGGATTTTCGGATTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>236 163 142 76 67 47 32 31 30 29 24 23 16 15 14 9 8 8 8 8 8 6</canonical_bands>
                <polymorphic_bands>268 163 142 76 67 47 31 30 29 24 23 16 15 14 9 8 8 8 8 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTACATCTCAACGAAACCATAC</pcr_primer_p1>
		<pcr_primer_p2>CATTTCCCCTCATTCATAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTACATCTCAACGAAACCATACAAAAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACATTTGAAACATTAGGTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGGCGGCCGACAGCTGACCGAACAAACAATTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTCTATGAATGAGGGGAAATG</canonical_amplicon>
		<polymorphic_amplicon>GTTACATCTCAACGAAACCATACAAAAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACATTTGAAACATTAGGTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGGCGGCCGACAGCTGACCGAACAAACAAKTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTCTATGAATGAGGGGAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23324</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>39090</contig_pos>
        <strand>+</strand>
        <context>TGAATTTGTC[C/T]TTTCACGCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCTTTGAAAATTGAATGTTCAAATTCCCGTTATTTTTTTGAATTTGTC</left_flank>
        <right_flank>TTTCACGCTCTCCCACAGAACAATTCGAAACTGCAAATTAATTTTTGATC</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTGAATGTAGTACAACTTTTACTAGAAAAAAGTAGACAAGTACATTAGCAATTCGAGAAAAAGAGAAAGAAAAAGAAAAAAAAAGGAGTTTACCCTTCAAATGCATATATCGCCCCATATATAATAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAAAATTGAATGTTCAAATTCCCGTTATTTTTTTGAATTTGTCTTTTCACGCTCTCCCACAGAACAATTCGAAACTGCAAATTAATTTTTGATCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGTTCCAAGATGATTCAAATGATTCTTAAAAAATTAATAAGTGGTTATAGATTCATCTATGGTCCTTTTCCGGAAGAAAAAATGTCAAAAATGGTCATTTTTGAAAGTTTTTTACAGGAAAAAAATCTATCTCCTCTTTCAGTTTTTGACATTTCTAGGAGTTTTATAGCTCAAAAAAACCGCAATTATTTTCTCTACATTTTCTATTCATGGATTTTTAATTTGTCTGATAAAACTTTTTTTGTAATCAAAAAACAACGCAAAAATGCTATTTTGTGCAATTTCATGAGGTTTTTGAATTATAAAAAAAGTTTTATCAGACGAATTAAATAATTCATCCATAGAAAATGTAGAGAAAATAATTGCGGTTCTG</canonical>
            <polymorphic>TGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTGAATGTAGTACAACTTTTACTAGAAAAAAGTAGACAAGTACATTAGCAATTCGAGAAAAAGAGAAAGAAAAAGAAAAAAAAAGGAGTTTACCCTTCAAATGCATATATCGCCCCATATATAATAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAAAATTGAATGTTCAAATTCCCGTTATTTTTTTGAATTTGTCYTTTCACGCTCTCCCACAGAACAATTCGAAACTGCAAATTAATTTTTGATCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGTTCCAAGATGATTCAAATGATTCTTAAAAAATTAATAAGTGGTTATAGATTCATCTATGGTCCTTTTCCGGAAGAAAAAATGTCAAAAATGGTCATTTTTGAAAGTTTTTTACAGGAAAAAAATCTATCTCCTCTTTCAGTTTTTGACATTTCTAGGAGTTTTATAGCTCAAAAAAACCGCAATTATTTTCTCTACATTTTCTATTCATGGATTTTTAATTTGTCTGATAAAACTTTTTTTGTAATCAAAAAACAACGCAAAAATGCTATTTTGTGCAATTTCATGAGGTTTTTGAATTATAAAAAAAGTTTTATCAGACGAATTAAATAATTCATCCATAGAAAATGTAGAGAAAATAATTGCGGTTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTTTGTTTTCTCGTCAA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTAGACCTGCAATTGTGAT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAAAATTGAATGTTCAAATTCCCGTTATTTTTTTGAATTTGTCTTTTCACGCTCTCCCACAGAACAATTCGAAACTGCAAATTAATTTTTGATCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAAAATTGAATGTTCAAATTCCCGTTATTTTTTTGAATTTGTCYTTTCACGCTCTCCCACAGAACAATTCGAAACTGCAAATTAATTTTTGATCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23325</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>39011</contig_pos>
        <strand>+</strand>
        <context>TTGCTTTTYG[A/T]GGTCTCTACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTG</left_flank>
        <right_flank>GGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAAAATTGAATGTTC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTGAATGTAGTACAACTTTTACTAGAAAAAAGTAGACAAGTACATTAGCAATTCGAGAAAAAGAGAAAGAAAAAGAAAAAAAAAGGAGTTTACCCTTCAAATGCATATATCGCCCCATATATAATAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAAAATTGAATGTTCAAATTCCCGTTATTTTTTTGAATTTGTCTTTTCACGCTCTCCCACAGAACAATTCGAAACTGCAAATTAATTTTTGATCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGTTCCAAGATGATTCAAATGATTCTTAAAAAATTAATAAGTGGTTATAGATTCATCTATGGTCCTTTTCCGGAAGAAAAAATGTCAAAAATGGTCATTTTTGAAAGTTTTTTACAGGAAAAAAATCTATCTCCTCTTTCAGTTTTTGACATTTCTAGGAGTTTTATAGCTCAAAAAAACCGCAATTATTTTCTCTACATTTTCTATTCATGGATTTTTAATTTGTCTGATAAAACTTTTTTTGTAATCAAAAAACAACGCAAAAATGCTATTTTGTGCAATTTCATGAGGTTT</canonical>
            <polymorphic>TAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTGAATGTAGTACAACTTTTACTAGAAAAAAGTAGACAAGTACATTAGCAATTCGAGAAAAAGAGAAAGAAAAAGAAAAAAAAAGGAGTTTACCCTTCAAATGCATATATCGCCCCATATATAATAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGWGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAAAATTGAATGTTCAAATTCCCGTTATTTTTTTGAATTTGTCTTTTCACGCTCTCCCACAGAACAATTCGAAACTGCAAATTAATTTTTGATCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGTTCCAAGATGATTCAAATGATTCTTAAAAAATTAATAAGTGGTTATAGATTCATCTATGGTCCTTTTCCGGAAGAAAAAATGTCAAAAATGGTCATTTTTGAAAGTTTTTTACAGGAAAAAAATCTATCTCCTCTTTCAGTTTTTGACATTTCTAGGAGTTTTATAGCTCAAAAAAACCGCAATTATTTTCTCTACATTTTCTATTCATGGATTTTTAATTTGTCTGATAAAACTTTTTTTGTAATCAAAAAACAACGCAAAAATGCTATTTTGTGCAATTTCATGAGGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTTCTGGATGAAGAAAGAAAG</pcr_primer_p1>
		<pcr_primer_p2>TAATTTGCAGTTTCGAATTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAAAATTGAATGTTCAAATTCCCGTTATTTTTTTGAATTTGTCTTTTCACGCTCTCCCACAGAACAATTCGAAACTGCAAATTA</canonical_amplicon>
		<polymorphic_amplicon>TAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGWGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAAAATTGAATGTTCAAATTCCCGTTATTTTTTTGAATTTGTCTTTTCACGCTCTCCCACAGAACAATTCGAAACTGCAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23326</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>39009</contig_pos>
        <strand>+</strand>
        <context>TGTTGCTTTT[C/T]GWGGTCTCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTT</left_flank>
        <right_flank>GAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAAAATTGAATGT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTGAATGTAGTACAACTTTTACTAGAAAAAAGTAGACAAGTACATTAGCAATTCGAGAAAAAGAGAAAGAAAAAGAAAAAAAAAGGAGTTTACCCTTCAAATGCATATATCGCCCCATATATAATAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAAAATTGAATGTTCAAATTCCCGTTATTTTTTTGAATTTGTCTTTTCACGCTCTCCCACAGAACAATTCGAAACTGCAAATTAATTTTTGATCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGTTCCAAGATGATTCAAATGATTCTTAAAAAATTAATAAGTGGTTATAGATTCATCTATGGTCCTTTTCCGGAAGAAAAAATGTCAAAAATGGTCATTTTTGAAAGTTTTTTACAGGAAAAAAATCTATCTCCTCTTTCAGTTTTTGACATTTCTAGGAGTTTTATAGCTCAAAAAAACCGCAATTATTTTCTCTACATTTTCTATTCATGGATTTTTAATTTGTCTGATAAAACTTTTTTTGTAATCAAAAAACAACGCAAAAATGCTATTTTGTGCAATTTCATGAGGT</canonical>
            <polymorphic>ACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTGAATGTAGTACAACTTTTACTAGAAAAAAGTAGACAAGTACATTAGCAATTCGAGAAAAAGAGAAAGAAAAAGAAAAAAAAAGGAGTTTACCCTTCAAATGCATATATCGCCCCATATATAATAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTYGAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAAAATTGAATGTTCAAATTCCCGTTATTTTTTTGAATTTGTCTTTTCACGCTCTCCCACAGAACAATTCGAAACTGCAAATTAATTTTTGATCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGTTCCAAGATGATTCAAATGATTCTTAAAAAATTAATAAGTGGTTATAGATTCATCTATGGTCCTTTTCCGGAAGAAAAAATGTCAAAAATGGTCATTTTTGAAAGTTTTTTACAGGAAAAAAATCTATCTCCTCTTTCAGTTTTTGACATTTCTAGGAGTTTTATAGCTCAAAAAAACCGCAATTATTTTCTCTACATTTTCTATTCATGGATTTTTAATTTGTCTGATAAAACTTTTTTTGTAATCAAAAAACAACGCAAAAATGCTATTTTGTGCAATTTCATGAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTTCTGGATGAAGAAAGAAAG</pcr_primer_p1>
		<pcr_primer_p2>TAATTTGCAGTTTCGAATTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAAAATTGAATGTTCAAATTCCCGTTATTTTTTTGAATTTGTCTTTTCACGCTCTCCCACAGAACAATTCGAAACTGCAAATTA</canonical_amplicon>
		<polymorphic_amplicon>TAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTYGAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAAAATTGAATGTTCAAATTCCCGTTATTTTTTTGAATTTGTCTTTTCACGCTCTCCCACAGAACAATTCGAAACTGCAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23327</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>38972</contig_pos>
        <strand>+</strand>
        <context>TAGAAAAACA[A/G]TTTTTTTCGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACA</left_flank>
        <right_flank>TTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGAGGTCTCTACTC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGATACTGAGATTTCGGGAACTCCAGGTTTAGAAATACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTGAATGTAGTACAACTTTTACTAGAAAAAAGTAGACAAGTACATTAGCAATTCGAGAAAAAGAGAAAGAAAAAGAAAAAAAAAGGAGTTTACCCTTCAAATGCATATATCGCCCCATATATAATAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAAAATTGAATGTTCAAATTCCCGTTATTTTTTTGAATTTGTCTTTTCACGCTCTCCCACAGAACAATTCGAAACTGCAAATTAATTTTTGATCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGTTCCAAGATGATTCAAATGATTCTTAAAAAATTAATAAGTGGTTATAGATTCATCTATGGTCCTTTTCCGGAAGAAAAAATGTCAAAAATGGTCATTTTTGAAAGTTTTTTACAGGAAAAAAATCTATCTCCTCTTTCAGTTTTTGACATTTCTAGGAGTTTTATAGCTCAAAAAAACCGCAATTATTTTCTCTACATTTTCTATTCATGGATTTTTAATTTGTCTGATAAAACTTTTTTTGTAATCAAAAAA</canonical>
            <polymorphic>GGGATACTGAGATTTCGGGAACTCCAGGTTTAGAAATACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTGAATGTAGTACAACTTTTACTAGAAAAAAGTAGACAAGTACATTAGCAATTCGAGAAAAAGAGAAAGAAAAAGAAAAAAAAAGGAGTTTACCCTTCAAATGCATATATCGCCCCATATATAATAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACARTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAAAATTGAATGTTCAAATTCCCGTTATTTTTTTGAATTTGTCTTTTCACGCTCTCCCACAGAACAATTCGAAACTGCAAATTAATTTTTGATCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGTTCCAAGATGATTCAAATGATTCTTAAAAAATTAATAAGTGGTTATAGATTCATCTATGGTCCTTTTCCGGAAGAAAAAATGTCAAAAATGGTCATTTTTGAAAGTTTTTTACAGGAAAAAAATCTATCTCCTCTTTCAGTTTTTGACATTTCTAGGAGTTTTATAGCTCAAAAAAACCGCAATTATTTTCTCTACATTTTCTATTCATGGATTTTTAATTTGTCTGATAAAACTTTTTTTGTAATCAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAAAAAGAGAAAGAAAAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>AACATTCAATTTTCAAAGAAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGAAAAAGAGAAAGAAAAAGAAAAAAAAAGGAGTTTACCCTTCAAATGCATATATCGCCCCATATATAATAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAAAATTGAATGTT</canonical_amplicon>
		<polymorphic_amplicon>GAGAAAAAGAGAAAGAAAAAGAAAAAAAAAGGAGTTTACCCTTCAAATGCATATATCGCCCCATATATAATAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACARTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAAAATTGAATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23328</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>38952</contig_pos>
        <strand>+</strand>
        <context>CTCGTCAAAA[A/T]TTTTCTAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAA</left_flank>
        <right_flank>TTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTCGAAAAATCTTTGTATGGGATACTGAGATTTCGGGAACTCCAGGTTTAGAAATACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTGAATGTAGTACAACTTTTACTAGAAAAAAGTAGACAAGTACATTAGCAATTCGAGAAAAAGAGAAAGAAAAAGAAAAAAAAAGGAGTTTACCCTTCAAATGCATATATCGCCCCATATATAATAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAAAATTGAATGTTCAAATTCCCGTTATTTTTTTGAATTTGTCTTTTCACGCTCTCCCACAGAACAATTCGAAACTGCAAATTAATTTTTGATCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGTTCCAAGATGATTCAAATGATTCTTAAAAAATTAATAAGTGGTTATAGATTCATCTATGGTCCTTTTCCGGAAGAAAAAATGTCAAAAATGGTCATTTTTGAAAGTTTTTTACAGGAAAAAAATCTATCTCCTCTTTCAGTTTTTGACATTTCTAGGAGTTTTATAGCTCAAAAAAACCGCAATTATTTTCTCTACATTTTCTATTCATGGATTTTTAATTTGTCTGATAAAA</canonical>
            <polymorphic>GATTCGAAAAATCTTTGTATGGGATACTGAGATTTCGGGAACTCCAGGTTTAGAAATACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTGAATGTAGTACAACTTTTACTAGAAAAAAGTAGACAAGTACATTAGCAATTCGAGAAAAAGAGAAAGAAAAAGAAAAAAAAAGGAGTTTACCCTTCAAATGCATATATCGCCCCATATATAATAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAAWTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAAAATTGAATGTTCAAATTCCCGTTATTTTTTTGAATTTGTCTTTTCACGCTCTCCCACAGAACAATTCGAAACTGCAAATTAATTTTTGATCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGTTCCAAGATGATTCAAATGATTCTTAAAAAATTAATAAGTGGTTATAGATTCATCTATGGTCCTTTTCCGGAAGAAAAAATGTCAAAAATGGTCATTTTTGAAAGTTTTTTACAGGAAAAAAATCTATCTCCTCTTTCAGTTTTTGACATTTCTAGGAGTTTTATAGCTCAAAAAAACCGCAATTATTTTCTCTACATTTTCTATTCATGGATTTTTAATTTGTCTGATAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>257 243 114 113 90 40 32 24 20 19 17 15 8 8</canonical_bands>
                <polymorphic_bands>356 257 114 90 40 32 24 20 19 17 15 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>152 144 99 91 90 53 40 38 36 32 30 20 20 19 17 16 16 15 14 13 9 8 8 8 8 4</canonical_bands>
                <polymorphic_bands>153 152 99 91 90 53 40 38 36 32 30 20 20 19 17 16 16 15 14 13 8 8 8 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAAAAAGAGAAAGAAAAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>AACATTCAATTTTCAAAGAAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGAAAAAGAGAAAGAAAAAGAAAAAAAAAGGAGTTTACCCTTCAAATGCATATATCGCCCCATATATAATAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAAAATTGAATGTT</canonical_amplicon>
		<polymorphic_amplicon>GAGAAAAAGAGAAAGAAAAAGAAAAAAAAAGGAGTTTACCCTTCAAATGCATATATCGCCCCATATATAATAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAAWTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAAAATTGAATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23329</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>38684</contig_pos>
        <strand></strand>
        <context>TGGACCACCA[T/A]AAGTCATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCA</left_flank>
        <right_flank>AAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGAACTTTTCTTTTCAGAGATTTTGAGATTTTGAGGTTCTTGGATGTGGAGAATCAGAGATTTCGAACTTTAGAAAATTCGAATTTCTGAGATTCTGTGATTCTGAAATTCTGAAATTTGAAACTTTGAATTTCGGATCTTGGGGAATTCTGGTGTAGACTCGGATTTTGAGGTTCTGAAATTCTGCAATTCTGGAATTTTGAGATTCTGAGGTTCAGAGATACGAGGATTCTGGCAATTTCAGATTTTGGGAATTTTAGATACGGATTCGAAAAATCTTTGTATGGGATACTGAGATTTCGGGAACTCCAGGTTTAGAAATACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTGAATGTAGTACAACTTTTACTAGAAAAAAGTAGACAAGTACATTAGCAATTCGAGAAAAAGAGAAAGAAAAAGAAAAAAAAAGGAGTTTACCCTTCAAATGCATATATCGCCCCATATATAATAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAAAATTGAATGTTCAAATTCCCGTTATTTTTTTGAATTTGTCTTTTCACGCTCTCCCACAGAACAATTCGAAACTGCAAATTAATTTTTGATCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAAC</canonical>
            <polymorphic>AAATGAACTTTTCTTTTCAGAGATTTTGAGATTTTGAGGTTCTTGGATGTGGAGAATCAGAGATTTCGAACTTTAGAAAATTCGAATTTCTGAGATTCTGTGATTCTGAAATTCTGAAATTTGAAACTTTGAATTTCGGATCTTGGGGAATTCTGGTGTAGACTCGGATTTTGAGGTTCTGAAATTCTGCAATTCTGGAATTTTGAGATTCTGAGGTTCAGAGATACGAGGATTCTGGCAATTTCAGATTTTGGGAATTTTAGATACGGATTCGAAAAATCTTTGTATGGGATACTGAGATTTCGGGAACTCCAGGTTTAGAAATACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCAWAAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTGAATGTAGTACAACTTTTACTAGAAAAAAGTAGACAAGTACATTAGCAATTCGAGAAAAAGAGAAAGAAAAAGAAAAAAAAAGGAGTTTACCCTTCAAATGCATATATCGCCCCATATATAATAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAAAATTGAATGTTCAAATTCCCGTTATTTTTTTGAATTTGTCTTTTCACGCTCTCCCACAGAACAATTCGAAACTGCAAATTAATTTTTGATCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTAGGCAAAAACTCAAAACTC</pcr_primer_p1>
		<pcr_primer_p2>CAAATGGAAAGAAGTAGAACAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTG</canonical_amplicon>
		<polymorphic_amplicon>TACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCAWAAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23336</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>2544</contig_pos>
        <strand>+</strand>
        <context>CTGAAAATTA[A/G]AAAAWTTCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGAAACTGTGCAAGTGTGCATTGCTCTGACATTGCTTATCTGAAAATTA</left_flank>
        <right_flank>AAAAATTCAAGATTTGATTCAAACTGTGTGAAACTTACTGAATGAATTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGAGATTCTGAAATTCTGAGATTCTGAAATTCTGAGATTCTGAGATTCCAAGATTCTAAAGATTCTGAGATTCTGAGATTCTGAGATTCCAAGATTCTAAGATTCTGAGATTCTGAGCTTCTGAGATTCTGAGATTCTAAAGATTTTGAGATACTGAGATTCTGAAATTCTGGAATTCTGAGATGTCGAAATTCTGAGATACTGGAATTCTGAGATTCTGAGATTCTGGAATTCTGAGATTCCGAAATTCTGAGATTCGGAGATTCTGGAATTCTGAGGTTTCGAAATTCTGAGATACTGATATTCGGGAATTCCAAAACTAGAAATTCTGAAACTTATTATGATGGATAATGGGCTTATTTCAAACAAAAAAAAAACATTTATTAAGAATTTTGTAAACAGATGAACTTGAATAGGAAAACTTTGAAACATCTTCTGACGTGGGATTCGAAACTGTGCAAGTGTGCATTGCTCTGACATTGCTTATCTGAAAATTAAAAAAATTCAAGATTTGATTCAAACTGTGTGAAACTTACTGAATGAATTCGAATCAATCACTCCCAAAAATTCTCCAAATGACAAGCTGATCGATTGCTTCTGATCTCGAGACCGCAGTCGTGCTTAATTAATAACTAGTTCGCAAGCAGATACACTACCAATTATATCAATTTGCTGAAATAAAAGATAAAATGATTCGACTGATACCGTAACTTACGAATCTAATTCAAGCAATTGGATGGTGTAGCACCATGGAACGGCATTTTGACAACCGAGCACAAATGAAAGGCGCATTCTAAACGAGATAAGATTTTTTAGAATTTTCGGAACTTTCATAATTTTAGATTATTGAAGGATTCCAAGATTCTAAGATTCTGATATCCGAAAAACACTGAAATTCAGGAATTCATTCGAAAAATTCAAAATCCTAAAATCCTATAACCTGCATTTCGAACTTCAAGCCTTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCT</canonical>
            <polymorphic>TCTGAGATTCTGAAATTCTGAGATTCTGAAATTCTGAGATTCTGAGATTCCAAGATTCTAAAGATTCTGAGATTCTGAGATTCTGAGATTCCAAGATTCTAAGATTCTGAGATTCTGAGCTTCTGAGATTCTGAGATTCTAAAGATTTTGAGATACTGAGATTCTGAAATTCTGGAATTCTGAGATGTCGAAATTCTGAGATACTGGAATTCTGAGATTCTGAGATTCTGGAATTCTGAGATTCCGAAATTCTGAGATTCGGAGATTCTGGAATTCTGAGGTTTCGAAATTCTGAGATACTGATATTCGGGAATTCCAAAACTAGAAATTCTGAAACTTATTATGATGGATAATGGGCTTATTTCAAACAAAAAAAAAACATTTATTAAGAATTTTGTAAACAGATGAACTTGAATAGGAAAACTTTGAAACATCTTCTGACGTGGGATTCGAAACTGTGCAAGTGTGCATTGCTCTGACATTGCTTATCTGAAAATTARAAAAATTCAAGATTTGATTCAAACTGTGTGAAACTTACTGAATGAATTCGAATCAATCACTCCCAAAAATTCTCCAAATGACAAGCTGATCGATTGCTTCTGATCTCGAGACCGCAGTCGTGCTTAATTAATAACTAGTTCGCAAGCAGATACACTACCAATTATATCAATTTGCTGAAATAAAAGATAAAATGATTCGACTGATACCGTAACTTACGAATCTAATTCAAGCAATTGGATGGTGTAGCACCATGGAACGGCATTTTGACAACCGAGCACAAATGAAAGGCGCATTCTAAACGAGATAAGATTTTTTAGAATTTTCGGAACTTTCATAATTTTAGATTATTGAAGGATTCCAAGATTCTAAGATTCTGATATCCGAAAAACACTGAAATTCAGGAATTCATTCGAAAAATTCAAAATCCTAAAATCCTATAACCTGCATTTCGAACTTCAAGCCTTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>386 372 127 111 4</canonical_bands>
                <polymorphic_bands>386 372 238 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAACTTGAATAGGAAAACTTTG</pcr_primer_p1>
		<pcr_primer_p2>TATCTGCTTGCGAACTAGTTATT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGAACTTGAATAGGAAAACTTTGAAACATCTTCTGACGTGGGATTCGAAACTGTGCAAGTGTGCATTGCTCTGACATTGCTTATCTGAAAATTAAAAAAATTCAAGATTTGATTCAAACTGTGTGAAACTTACTGAATGAATTCGAATCAATCACTCCCAAAAATTCTCCAAATGACAAGCTGATCGATTGCTTCTGATCTCGAGACCGCAGTCGTGCTTAATTAATAACTAGTTCGCAAGCAGATA</canonical_amplicon>
		<polymorphic_amplicon>TGAACTTGAATAGGAAAACTTTGAAACATCTTCTGACGTGGGATTCGAAACTGTGCAAGTGTGCATTGCTCTGACATTGCTTATCTGAAAATTARAAAAATTCAAGATTTGATTCAAACTGTGTGAAACTTACTGAATGAATTCGAATCAATCACTCCCAAAAATTCTCCAAATGACAAGCTGATCGATTGCTTCTGATCTCGAGACCGCAGTCGTGCTTAATTAATAACTAGTTCGCAAGCAGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23337</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>2549</contig_pos>
        <strand>+</strand>
        <context>AATTARAAAA[A/T]TTCAAGATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTGTGCAAGTGTGCATTGCTCTGACATTGCTTATCTGAAAATTAAAAAA</left_flank>
        <right_flank>TTCAAGATTTGATTCAAACTGTGTGAAACTTACTGAATGAATTCGAATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTCTGAAATTCTGAGATTCTGAAATTCTGAGATTCTGAGATTCCAAGATTCTAAAGATTCTGAGATTCTGAGATTCTGAGATTCCAAGATTCTAAGATTCTGAGATTCTGAGCTTCTGAGATTCTGAGATTCTAAAGATTTTGAGATACTGAGATTCTGAAATTCTGGAATTCTGAGATGTCGAAATTCTGAGATACTGGAATTCTGAGATTCTGAGATTCTGGAATTCTGAGATTCCGAAATTCTGAGATTCGGAGATTCTGGAATTCTGAGGTTTCGAAATTCTGAGATACTGATATTCGGGAATTCCAAAACTAGAAATTCTGAAACTTATTATGATGGATAATGGGCTTATTTCAAACAAAAAAAAAACATTTATTAAGAATTTTGTAAACAGATGAACTTGAATAGGAAAACTTTGAAACATCTTCTGACGTGGGATTCGAAACTGTGCAAGTGTGCATTGCTCTGACATTGCTTATCTGAAAATTAAAAAAATTCAAGATTTGATTCAAACTGTGTGAAACTTACTGAATGAATTCGAATCAATCACTCCCAAAAATTCTCCAAATGACAAGCTGATCGATTGCTTCTGATCTCGAGACCGCAGTCGTGCTTAATTAATAACTAGTTCGCAAGCAGATACACTACCAATTATATCAATTTGCTGAAATAAAAGATAAAATGATTCGACTGATACCGTAACTTACGAATCTAATTCAAGCAATTGGATGGTGTAGCACCATGGAACGGCATTTTGACAACCGAGCACAAATGAAAGGCGCATTCTAAACGAGATAAGATTTTTTAGAATTTTCGGAACTTTCATAATTTTAGATTATTGAAGGATTCCAAGATTCTAAGATTCTGATATCCGAAAAACACTGAAATTCAGGAATTCATTCGAAAAATTCAAAATCCTAAAATCCTATAACCTGCATTTCGAACTTCAAGCCTTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATT</canonical>
            <polymorphic>GATTCTGAAATTCTGAGATTCTGAAATTCTGAGATTCTGAGATTCCAAGATTCTAAAGATTCTGAGATTCTGAGATTCTGAGATTCCAAGATTCTAAGATTCTGAGATTCTGAGCTTCTGAGATTCTGAGATTCTAAAGATTTTGAGATACTGAGATTCTGAAATTCTGGAATTCTGAGATGTCGAAATTCTGAGATACTGGAATTCTGAGATTCTGAGATTCTGGAATTCTGAGATTCCGAAATTCTGAGATTCGGAGATTCTGGAATTCTGAGGTTTCGAAATTCTGAGATACTGATATTCGGGAATTCCAAAACTAGAAATTCTGAAACTTATTATGATGGATAATGGGCTTATTTCAAACAAAAAAAAAACATTTATTAAGAATTTTGTAAACAGATGAACTTGAATAGGAAAACTTTGAAACATCTTCTGACGTGGGATTCGAAACTGTGCAAGTGTGCATTGCTCTGACATTGCTTATCTGAAAATTAAAAAAWTTCAAGATTTGATTCAAACTGTGTGAAACTTACTGAATGAATTCGAATCAATCACTCCCAAAAATTCTCCAAATGACAAGCTGATCGATTGCTTCTGATCTCGAGACCGCAGTCGTGCTTAATTAATAACTAGTTCGCAAGCAGATACACTACCAATTATATCAATTTGCTGAAATAAAAGATAAAATGATTCGACTGATACCGTAACTTACGAATCTAATTCAAGCAATTGGATGGTGTAGCACCATGGAACGGCATTTTGACAACCGAGCACAAATGAAAGGCGCATTCTAAACGAGATAAGATTTTTTAGAATTTTCGGAACTTTCATAATTTTAGATTATTGAAGGATTCCAAGATTCTAAGATTCTGATATCCGAAAAACACTGAAATTCAGGAATTCATTCGAAAAATTCAAAATCCTAAAATCCTATAACCTGCATTTCGAACTTCAAGCCTTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>251 138 113 77 64 53 41 24 24 24 23 16 16 16 16 16 15 13 12 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>251 154 138 77 64 53 24 24 24 23 16 16 16 16 16 15 13 12 8 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>138 104 86 64 59 58 55 53 41 34 24 24 24 23 18 16 16 16 16 16 15 13 9 9 9 8 8 8 8 8 8 8 4</canonical_bands>
                <polymorphic_bands>138 104 86 64 59 58 55 53 50 34 24 24 24 23 18 16 16 16 16 16 15 13 9 9 8 8 8 8 8 8 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAACTTGAATAGGAAAACTTTG</pcr_primer_p1>
		<pcr_primer_p2>TATCTGCTTGCGAACTAGTTATT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGAACTTGAATAGGAAAACTTTGAAACATCTTCTGACGTGGGATTCGAAACTGTGCAAGTGTGCATTGCTCTGACATTGCTTATCTGAAAATTAAAAAAATTCAAGATTTGATTCAAACTGTGTGAAACTTACTGAATGAATTCGAATCAATCACTCCCAAAAATTCTCCAAATGACAAGCTGATCGATTGCTTCTGATCTCGAGACCGCAGTCGTGCTTAATTAATAACTAGTTCGCAAGCAGATA</canonical_amplicon>
		<polymorphic_amplicon>TGAACTTGAATAGGAAAACTTTGAAACATCTTCTGACGTGGGATTCGAAACTGTGCAAGTGTGCATTGCTCTGACATTGCTTATCTGAAAATTAAAAAAWTTCAAGATTTGATTCAAACTGTGTGAAACTTACTGAATGAATTCGAATCAATCACTCCCAAAAATTCTCCAAATGACAAGCTGATCGATTGCTTCTGATCTCGAGACCGCAGTCGTGCTTAATTAATAACTAGTTCGCAAGCAGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23338</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>2714</contig_pos>
        <strand>+</strand>
        <context>AATTATATCA[A/T]TTTGCTGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGCTTAATTAATAACTAGTTCGCAAGCAGATACACTACCAATTATATCA</left_flank>
        <right_flank>TTTGCTGAAATAAAAGATAAAATGATTCGACTGATACCGTAACTTACGAA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGGAATTCTGAGATGTCGAAATTCTGAGATACTGGAATTCTGAGATTCTGAGATTCTGGAATTCTGAGATTCCGAAATTCTGAGATTCGGAGATTCTGGAATTCTGAGGTTTCGAAATTCTGAGATACTGATATTCGGGAATTCCAAAACTAGAAATTCTGAAACTTATTATGATGGATAATGGGCTTATTTCAAACAAAAAAAAAACATTTATTAAGAATTTTGTAAACAGATGAACTTGAATAGGAAAACTTTGAAACATCTTCTGACGTGGGATTCGAAACTGTGCAAGTGTGCATTGCTCTGACATTGCTTATCTGAAAATTAAAAAAATTCAAGATTTGATTCAAACTGTGTGAAACTTACTGAATGAATTCGAATCAATCACTCCCAAAAATTCTCCAAATGACAAGCTGATCGATTGCTTCTGATCTCGAGACCGCAGTCGTGCTTAATTAATAACTAGTTCGCAAGCAGATACACTACCAATTATATCAATTTGCTGAAATAAAAGATAAAATGATTCGACTGATACCGTAACTTACGAATCTAATTCAAGCAATTGGATGGTGTAGCACCATGGAACGGCATTTTGACAACCGAGCACAAATGAAAGGCGCATTCTAAACGAGATAAGATTTTTTAGAATTTTCGGAACTTTCATAATTTTAGATTATTGAAGGATTCCAAGATTCTAAGATTCTGATATCCGAAAAACACTGAAATTCAGGAATTCATTCGAAAAATTCAAAATCCTAAAATCCTATAACCTGCATTTCGAACTTCAAGCCTTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTCAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCTGGAATTCCTGAATTTCCTGGAATTTCTCAATTTCCTGGAATTTCTGAATTTTCTAGAATTTCTGAATTTCTGAATTTCTGA</canonical>
            <polymorphic>TCTGGAATTCTGAGATGTCGAAATTCTGAGATACTGGAATTCTGAGATTCTGAGATTCTGGAATTCTGAGATTCCGAAATTCTGAGATTCGGAGATTCTGGAATTCTGAGGTTTCGAAATTCTGAGATACTGATATTCGGGAATTCCAAAACTAGAAATTCTGAAACTTATTATGATGGATAATGGGCTTATTTCAAACAAAAAAAAAACATTTATTAAGAATTTTGTAAACAGATGAACTTGAATAGGAAAACTTTGAAACATCTTCTGACGTGGGATTCGAAACTGTGCAAGTGTGCATTGCTCTGACATTGCTTATCTGAAAATTAAAAAAATTCAAGATTTGATTCAAACTGTGTGAAACTTACTGAATGAATTCGAATCAATCACTCCCAAAAATTCTCCAAATGACAAGCTGATCGATTGCTTCTGATCTCGAGACCGCAGTCGTGCTTAATTAATAACTAGTTCGCAAGCAGATACACTACCAATTATATCAWTTTGCTGAAATAAAAGATAAAATGATTCGACTGATACCGTAACTTACGAATCTAATTCAAGCAATTGGATGGTGTAGCACCATGGAACGGCATTTTGACAACCGAGCACAAATGAAAGGCGCATTCTAAACGAGATAAGATTTTTTAGAATTTTCGGAACTTTCATAATTTTAGATTATTGAAGGATTCCAAGATTCTAAGATTCTGATATCCGAAAAACACTGAAATTCAGGAATTCATTCGAAAAATTCAAAATCCTAAAATCCTATAACCTGCATTTCGAACTTCAAGCCTTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTCAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCTGGAATTCCTGAATTTCCTGGAATTTCTCAATTTCCTGGAATTTCTGAATTTTCTAGAATTTCTGAATTTCTGAATTTCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>104 86 64 59 58 55 53 41 34 24 24 24 23 18 16 16 16 16 15 13 10 10 10 10 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 5</canonical_bands>
                <polymorphic_bands>104 86 64 64 59 58 53 41 34 24 24 24 23 18 16 16 16 16 15 13 10 10 10 10 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATCGATTGCTTCTGATCT</pcr_primer_p1>
		<pcr_primer_p2>GAAAGTTCCGAAAATTCTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGATCGATTGCTTCTGATCTCGAGACCGCAGTCGTGCTTAATTAATAACTAGTTCGCAAGCAGATACACTACCAATTATATCAATTTGCTGAAATAAAAGATAAAATGATTCGACTGATACCGTAACTTACGAATCTAATTCAAGCAATTGGATGGTGTAGCACCATGGAACGGCATTTTGACAACCGAGCACAAATGAAAGGCGCATTCTAAACGAGATAAGATTTTTTAGAATTTTCGGAACTTTC</canonical_amplicon>
		<polymorphic_amplicon>TGATCGATTGCTTCTGATCTCGAGACCGCAGTCGTGCTTAATTAATAACTAGTTCGCAAGCAGATACACTACCAATTATATCAWTTTGCTGAAATAAAAGATAAAATGATTCGACTGATACCGTAACTTACGAATCTAATTCAAGCAATTGGATGGTGTAGCACCATGGAACGGCATTTTGACAACCGAGCACAAATGAAAGGCGCATTCTAAACGAGATAAGATTTTTTAGAATTTTCGGAACTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23339</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>2728</contig_pos>
        <strand>+</strand>
        <context>GCTGAAATAA[A/C]AGATAAAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACTAGTTCGCAAGCAGATACACTACCAATTATATCAATTTGCTGAAATAA</left_flank>
        <right_flank>AGATAAAATGATTCGACTGATACCGTAACTTACGAATCTAATTCAAGCAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTCGAAATTCTGAGATACTGGAATTCTGAGATTCTGAGATTCTGGAATTCTGAGATTCCGAAATTCTGAGATTCGGAGATTCTGGAATTCTGAGGTTTCGAAATTCTGAGATACTGATATTCGGGAATTCCAAAACTAGAAATTCTGAAACTTATTATGATGGATAATGGGCTTATTTCAAACAAAAAAAAAACATTTATTAAGAATTTTGTAAACAGATGAACTTGAATAGGAAAACTTTGAAACATCTTCTGACGTGGGATTCGAAACTGTGCAAGTGTGCATTGCTCTGACATTGCTTATCTGAAAATTAAAAAAATTCAAGATTTGATTCAAACTGTGTGAAACTTACTGAATGAATTCGAATCAATCACTCCCAAAAATTCTCCAAATGACAAGCTGATCGATTGCTTCTGATCTCGAGACCGCAGTCGTGCTTAATTAATAACTAGTTCGCAAGCAGATACACTACCAATTATATCAATTTGCTGAAATAAAAGATAAAATGATTCGACTGATACCGTAACTTACGAATCTAATTCAAGCAATTGGATGGTGTAGCACCATGGAACGGCATTTTGACAACCGAGCACAAATGAAAGGCGCATTCTAAACGAGATAAGATTTTTTAGAATTTTCGGAACTTTCATAATTTTAGATTATTGAAGGATTCCAAGATTCTAAGATTCTGATATCCGAAAAACACTGAAATTCAGGAATTCATTCGAAAAATTCAAAATCCTAAAATCCTATAACCTGCATTTCGAACTTCAAGCCTTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTCAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCTGGAATTCCTGAATTTCCTGGAATTTCTCAATTTCCTGGAATTTCTGAATTTTCTAGAATTTCTGAATTTCTGAATTTCTGAATTTCGGAATTTCT</canonical>
            <polymorphic>ATGTCGAAATTCTGAGATACTGGAATTCTGAGATTCTGAGATTCTGGAATTCTGAGATTCCGAAATTCTGAGATTCGGAGATTCTGGAATTCTGAGGTTTCGAAATTCTGAGATACTGATATTCGGGAATTCCAAAACTAGAAATTCTGAAACTTATTATGATGGATAATGGGCTTATTTCAAACAAAAAAAAAACATTTATTAAGAATTTTGTAAACAGATGAACTTGAATAGGAAAACTTTGAAACATCTTCTGACGTGGGATTCGAAACTGTGCAAGTGTGCATTGCTCTGACATTGCTTATCTGAAAATTAAAAAAATTCAAGATTTGATTCAAACTGTGTGAAACTTACTGAATGAATTCGAATCAATCACTCCCAAAAATTCTCCAAATGACAAGCTGATCGATTGCTTCTGATCTCGAGACCGCAGTCGTGCTTAATTAATAACTAGTTCGCAAGCAGATACACTACCAATTATATCAATTTGCTGAAATAAMAGATAAAATGATTCGACTGATACCGTAACTTACGAATCTAATTCAAGCAATTGGATGGTGTAGCACCATGGAACGGCATTTTGACAACCGAGCACAAATGAAAGGCGCATTCTAAACGAGATAAGATTTTTTAGAATTTTCGGAACTTTCATAATTTTAGATTATTGAAGGATTCCAAGATTCTAAGATTCTGATATCCGAAAAACACTGAAATTCAGGAATTCATTCGAAAAATTCAAAATCCTAAAATCCTATAACCTGCATTTCGAACTTCAAGCCTTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTCAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCTGGAATTCCTGAATTTCCTGGAATTTCTCAATTTCCTGGAATTTCTGAATTTTCTAGAATTTCTGAATTTCTGAATTTCTGAATTTCGGAATTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATAACTAGTTCGCAAGCAGAT</pcr_primer_p1>
		<pcr_primer_p2>TAGAATCTTGGAATCCTTCAATA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TAATAACTAGTTCGCAAGCAGATACACTACCAATTATATCAATTTGCTGAAATAAAAGATAAAATGATTCGACTGATACCGTAACTTACGAATCTAATTCAAGCAATTGGATGGTGTAGCACCATGGAACGGCATTTTGACAACCGAGCACAAATGAAAGGCGCATTCTAAACGAGATAAGATTTTTTAGAATTTTCGGAACTTTCATAATTTTAGATTATTGAAGGATTCCAAGATTCTA</canonical_amplicon>
		<polymorphic_amplicon>TAATAACTAGTTCGCAAGCAGATACACTACCAATTATATCAATTTGCTGAAATAAMAGATAAAATGATTCGACTGATACCGTAACTTACGAATCTAATTCAAGCAATTGGATGGTGTAGCACCATGGAACGGCATTTTGACAACCGAGCACAAATGAAAGGCGCATTCTAAACGAGATAAGATTTTTTAGAATTTTCGGAACTTTCATAATTTTAGATTATTGAAGGATTCCAAGATTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23340</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>2814</contig_pos>
        <strand>+</strand>
        <context>GCATTTTGAC[A/C]ACCGAGCACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCTAATTCAAGCAATTGGATGGTGTAGCACCATGGAACGGCATTTTGAC</left_flank>
        <right_flank>ACCGAGCACAAATGAAAGGCGCATTCTAAACGAGATAAGATTTTTTAGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTCTGAGGTTTCGAAATTCTGAGATACTGATATTCGGGAATTCCAAAACTAGAAATTCTGAAACTTATTATGATGGATAATGGGCTTATTTCAAACAAAAAAAAAACATTTATTAAGAATTTTGTAAACAGATGAACTTGAATAGGAAAACTTTGAAACATCTTCTGACGTGGGATTCGAAACTGTGCAAGTGTGCATTGCTCTGACATTGCTTATCTGAAAATTAAAAAAATTCAAGATTTGATTCAAACTGTGTGAAACTTACTGAATGAATTCGAATCAATCACTCCCAAAAATTCTCCAAATGACAAGCTGATCGATTGCTTCTGATCTCGAGACCGCAGTCGTGCTTAATTAATAACTAGTTCGCAAGCAGATACACTACCAATTATATCAATTTGCTGAAATAAAAGATAAAATGATTCGACTGATACCGTAACTTACGAATCTAATTCAAGCAATTGGATGGTGTAGCACCATGGAACGGCATTTTGACAACCGAGCACAAATGAAAGGCGCATTCTAAACGAGATAAGATTTTTTAGAATTTTCGGAACTTTCATAATTTTAGATTATTGAAGGATTCCAAGATTCTAAGATTCTGATATCCGAAAAACACTGAAATTCAGGAATTCATTCGAAAAATTCAAAATCCTAAAATCCTATAACCTGCATTTCGAACTTCAAGCCTTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTCAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCTGGAATTCCTGAATTTCCTGGAATTTCTCAATTTCCTGGAATTTCTGAATTTTCTAGAATTTCTGAATTTCTGAATTTCTGAATTTCGGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCTGGAATTTCTGAATTTCCTGGAATTCCTGGAATTCCTG</canonical>
            <polymorphic>GAATTCTGAGGTTTCGAAATTCTGAGATACTGATATTCGGGAATTCCAAAACTAGAAATTCTGAAACTTATTATGATGGATAATGGGCTTATTTCAAACAAAAAAAAAACATTTATTAAGAATTTTGTAAACAGATGAACTTGAATAGGAAAACTTTGAAACATCTTCTGACGTGGGATTCGAAACTGTGCAAGTGTGCATTGCTCTGACATTGCTTATCTGAAAATTAAAAAAATTCAAGATTTGATTCAAACTGTGTGAAACTTACTGAATGAATTCGAATCAATCACTCCCAAAAATTCTCCAAATGACAAGCTGATCGATTGCTTCTGATCTCGAGACCGCAGTCGTGCTTAATTAATAACTAGTTCGCAAGCAGATACACTACCAATTATATCAATTTGCTGAAATAAAAGATAAAATGATTCGACTGATACCGTAACTTACGAATCTAATTCAAGCAATTGGATGGTGTAGCACCATGGAACGGCATTTTGACMACCGAGCACAAATGAAAGGCGCATTCTAAACGAGATAAGATTTTTTAGAATTTTCGGAACTTTCATAATTTTAGATTATTGAAGGATTCCAAGATTCTAAGATTCTGATATCCGAAAAACACTGAAATTCAGGAATTCATTCGAAAAATTCAAAATCCTAAAATCCTATAACCTGCATTTCGAACTTCAAGCCTTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTCAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCTGGAATTCCTGAATTTCCTGGAATTTCTCAATTTCCTGGAATTTCTGAATTTTCTAGAATTTCTGAATTTCTGAATTTCTGAATTTCGGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCTGGAATTTCTGAATTTCCTGGAATTCCTGGAATTCCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATAACTAGTTCGCAAGCAGAT</pcr_primer_p1>
		<pcr_primer_p2>TAGAATCTTGGAATCCTTCAATA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TAATAACTAGTTCGCAAGCAGATACACTACCAATTATATCAATTTGCTGAAATAAAAGATAAAATGATTCGACTGATACCGTAACTTACGAATCTAATTCAAGCAATTGGATGGTGTAGCACCATGGAACGGCATTTTGACAACCGAGCACAAATGAAAGGCGCATTCTAAACGAGATAAGATTTTTTAGAATTTTCGGAACTTTCATAATTTTAGATTATTGAAGGATTCCAAGATTCTA</canonical_amplicon>
		<polymorphic_amplicon>TAATAACTAGTTCGCAAGCAGATACACTACCAATTATATCAATTTGCTGAAATAAAAGATAAAATGATTCGACTGATACCGTAACTTACGAATCTAATTCAAGCAATTGGATGGTGTAGCACCATGGAACGGCATTTTGACMACCGAGCACAAATGAAAGGCGCATTCTAAACGAGATAAGATTTTTTAGAATTTTCGGAACTTTCATAATTTTAGATTATTGAAGGATTCCAAGATTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23341</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>2918</contig_pos>
        <strand>+</strand>
        <context>ATTCTAAGAT[A/T]CTGATATCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGGAACTTTCATAATTTTAGATTATTGAAGGATTCCAAGATTCTAAGAT</left_flank>
        <right_flank>CTGATATCCGAAAAACACTGAAATTCAGGAATTCATTCGAAAAATTCAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAACATTTATTAAGAATTTTGTAAACAGATGAACTTGAATAGGAAAACTTTGAAACATCTTCTGACGTGGGATTCGAAACTGTGCAAGTGTGCATTGCTCTGACATTGCTTATCTGAAAATTAAAAAAATTCAAGATTTGATTCAAACTGTGTGAAACTTACTGAATGAATTCGAATCAATCACTCCCAAAAATTCTCCAAATGACAAGCTGATCGATTGCTTCTGATCTCGAGACCGCAGTCGTGCTTAATTAATAACTAGTTCGCAAGCAGATACACTACCAATTATATCAATTTGCTGAAATAAAAGATAAAATGATTCGACTGATACCGTAACTTACGAATCTAATTCAAGCAATTGGATGGTGTAGCACCATGGAACGGCATTTTGACAACCGAGCACAAATGAAAGGCGCATTCTAAACGAGATAAGATTTTTTAGAATTTTCGGAACTTTCATAATTTTAGATTATTGAAGGATTCCAAGATTCTAAGATTCTGATATCCGAAAAACACTGAAATTCAGGAATTCATTCGAAAAATTCAAAATCCTAAAATCCTATAACCTGCATTTCGAACTTCAAGCCTTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTCAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCTGGAATTCCTGAATTTCCTGGAATTTCTCAATTTCCTGGAATTTCTGAATTTTCTAGAATTTCTGAATTTCTGAATTTCTGAATTTCGGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCTGGAATTTCTGAATTTCCTGGAATTCCTGGAATTCCTGAATTTCCTGGAATTTCTGAATTTCAAATCAAAAACCCAAAATTTTGCAGTTTTCATACCAAAATTCTGATTCGTAATAAAGTCTTCAGAATAAGAATCCGTGTA</canonical>
            <polymorphic>AAAAACATTTATTAAGAATTTTGTAAACAGATGAACTTGAATAGGAAAACTTTGAAACATCTTCTGACGTGGGATTCGAAACTGTGCAAGTGTGCATTGCTCTGACATTGCTTATCTGAAAATTAAAAAAATTCAAGATTTGATTCAAACTGTGTGAAACTTACTGAATGAATTCGAATCAATCACTCCCAAAAATTCTCCAAATGACAAGCTGATCGATTGCTTCTGATCTCGAGACCGCAGTCGTGCTTAATTAATAACTAGTTCGCAAGCAGATACACTACCAATTATATCAATTTGCTGAAATAAAAGATAAAATGATTCGACTGATACCGTAACTTACGAATCTAATTCAAGCAATTGGATGGTGTAGCACCATGGAACGGCATTTTGACAACCGAGCACAAATGAAAGGCGCATTCTAAACGAGATAAGATTTTTTAGAATTTTCGGAACTTTCATAATTTTAGATTATTGAAGGATTCCAAGATTCTAAGATWCTGATATCCGAAAAACACTGAAATTCAGGAATTCATTCGAAAAATTCAAAATCCTAAAATCCTATAACCTGCATTTCGAACTTCAAGCCTTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTCAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCTGGAATTCCTGAATTTCCTGGAATTTCTCAATTTCCTGGAATTTCTGAATTTTCTAGAATTTCTGAATTTCTGAATTTCTGAATTTCGGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCTGGAATTTCTGAATTTCCTGGAATTCCTGGAATTCCTGAATTTCCTGGAATTTCTGAATTTCAAATCAAAAACCCAAAATTTTGCAGTTTTCATACCAAAATTCTGATTCGTAATAAAGTCTTCAGAATAAGAATCCGTGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>467 144 137 73 69 34 26 24 10 8 8</canonical_bands>
                <polymorphic_bands>475 144 137 73 69 34 26 24 10 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>225 110 85 65 54 50 50 45 38 20 18 18 17 16 16 14 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>225 110 85 65 57 54 50 45 38 20 18 18 17 16 16 14 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>467 144 137 73 69 34 26 24 10 8 8</canonical_bands>
                <polymorphic_bands>475 144 137 73 69 34 26 24 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATAAAATGATTCGACTGATACC</pcr_primer_p1>
		<pcr_primer_p2>AGGATTTTAGGATTTTGAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GATAAAATGATTCGACTGATACCGTAACTTACGAATCTAATTCAAGCAATTGGATGGTGTAGCACCATGGAACGGCATTTTGACAACCGAGCACAAATGAAAGGCGCATTCTAAACGAGATAAGATTTTTTAGAATTTTCGGAACTTTCATAATTTTAGATTATTGAAGGATTCCAAGATTCTAAGATTCTGATATCCGAAAAACACTGAAATTCAGGAATTCATTCGAAAAATTCAAAATCCTAAAATCCT</canonical_amplicon>
		<polymorphic_amplicon>GATAAAATGATTCGACTGATACCGTAACTTACGAATCTAATTCAAGCAATTGGATGGTGTAGCACCATGGAACGGCATTTTGACAACCGAGCACAAATGAAAGGCGCATTCTAAACGAGATAAGATTTTTTAGAATTTTCGGAACTTTCATAATTTTAGATTATTGAAGGATTCCAAGATTCTAAGATWCTGATATCCGAAAAACACTGAAATTCAGGAATTCATTCGAAAAATTCAAAATCCTAAAATCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23342</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>2958</contig_pos>
        <strand>+</strand>
        <context>AATTCATTCG[A/G]AAAATTCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCTAAGATTCTGATATCCGAAAAACACTGAAATTCAGGAATTCATTCG</left_flank>
        <right_flank>AAAATTCAAAATCCTAAAATCCTATAACCTGCATTTCGAACTTCAAGCCT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGGAAAACTTTGAAACATCTTCTGACGTGGGATTCGAAACTGTGCAAGTGTGCATTGCTCTGACATTGCTTATCTGAAAATTAAAAAAATTCAAGATTTGATTCAAACTGTGTGAAACTTACTGAATGAATTCGAATCAATCACTCCCAAAAATTCTCCAAATGACAAGCTGATCGATTGCTTCTGATCTCGAGACCGCAGTCGTGCTTAATTAATAACTAGTTCGCAAGCAGATACACTACCAATTATATCAATTTGCTGAAATAAAAGATAAAATGATTCGACTGATACCGTAACTTACGAATCTAATTCAAGCAATTGGATGGTGTAGCACCATGGAACGGCATTTTGACAACCGAGCACAAATGAAAGGCGCATTCTAAACGAGATAAGATTTTTTAGAATTTTCGGAACTTTCATAATTTTAGATTATTGAAGGATTCCAAGATTCTAAGATTCTGATATCCGAAAAACACTGAAATTCAGGAATTCATTCGAAAAATTCAAAATCCTAAAATCCTATAACCTGCATTTCGAACTTCAAGCCTTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTCAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCTGGAATTCCTGAATTTCCTGGAATTTCTCAATTTCCTGGAATTTCTGAATTTTCTAGAATTTCTGAATTTCTGAATTTCTGAATTTCGGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCTGGAATTTCTGAATTTCCTGGAATTCCTGGAATTCCTGAATTTCCTGGAATTTCTGAATTTCAAATCAAAAACCCAAAATTTTGCAGTTTTCATACCAAAATTCTGATTCGTAATAAAGTCTTCAGAATAAGAATCCGTGTACAATTCTTTTTGTTTTCTTGAGAATTGCTAAAAAAAAAGT</canonical>
            <polymorphic>ATAGGAAAACTTTGAAACATCTTCTGACGTGGGATTCGAAACTGTGCAAGTGTGCATTGCTCTGACATTGCTTATCTGAAAATTAAAAAAATTCAAGATTTGATTCAAACTGTGTGAAACTTACTGAATGAATTCGAATCAATCACTCCCAAAAATTCTCCAAATGACAAGCTGATCGATTGCTTCTGATCTCGAGACCGCAGTCGTGCTTAATTAATAACTAGTTCGCAAGCAGATACACTACCAATTATATCAATTTGCTGAAATAAAAGATAAAATGATTCGACTGATACCGTAACTTACGAATCTAATTCAAGCAATTGGATGGTGTAGCACCATGGAACGGCATTTTGACAACCGAGCACAAATGAAAGGCGCATTCTAAACGAGATAAGATTTTTTAGAATTTTCGGAACTTTCATAATTTTAGATTATTGAAGGATTCCAAGATTCTAAGATTCTGATATCCGAAAAACACTGAAATTCAGGAATTCATTCGRAAAATTCAAAATCCTAAAATCCTATAACCTGCATTTCGAACTTCAAGCCTTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTCAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCTGGAATTCCTGAATTTCCTGGAATTTCTCAATTTCCTGGAATTTCTGAATTTTCTAGAATTTCTGAATTTCTGAATTTCTGAATTTCGGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCTGGAATTTCTGAATTTCCTGGAATTCCTGGAATTCCTGAATTTCCTGGAATTTCTGAATTTCAAATCAAAAACCCAAAATTTTGCAGTTTTCATACCAAAATTCTGATTCGTAATAAAGTCTTCAGAATAAGAATCCGTGTACAATTCTTTTTGTTTTCTTGAGAATTGCTAAAAAAAAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>464 363 98 39 36</canonical_bands>
                <polymorphic_bands>464 402 98 36</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>463 214 98 91 42 39 37 16</canonical_bands>
                <polymorphic_bands>463 253 98 91 42 37 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGGATTCCAAGATTCTAAGAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGGGTTTTTGATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>462</pcr_amplicon_size>
		<canonical_amplicon>GAAGGATTCCAAGATTCTAAGATTCTGATATCCGAAAAACACTGAAATTCAGGAATTCATTCGAAAAATTCAAAATCCTAAAATCCTATAACCTGCATTTCGAACTTCAAGCCTTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTCAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCTGGAATTCCTGAATTTCCTGGAATTTCTCAATTTCCTGGAATTTCTGAATTTTCTAGAATTTCTGAATTTCTGAATTTCTGAATTTCGGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCTGGAATTTCTGAATTTCCTGGAATTCCTGGAATTCCTGAATTTCCTGGAATTTCTGAATTTCAAATCAAAAACCCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>GAAGGATTCCAAGATTCTAAGATTCTGATATCCGAAAAACACTGAAATTCAGGAATTCATTCGRAAAATTCAAAATCCTAAAATCCTATAACCTGCATTTCGAACTTCAAGCCTTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTCAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCTGGAATTCCTGAATTTCCTGGAATTTCTCAATTTCCTGGAATTTCTGAATTTTCTAGAATTTCTGAATTTCTGAATTTCTGAATTTCGGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCTGGAATTTCTGAATTTCCTGGAATTCCTGGAATTCCTGAATTTCCTGGAATTTCTGAATTTCAAATCAAAAACCCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23343</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>23034</contig_pos>
        <strand>+</strand>
        <context>TTCAAGAGAA[A/G]TTTTCAAAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATCAAAATTTAGTAATGTTTCGACAGTTTTAGAACCAAATTCAAGAGAA</left_flank>
        <right_flank>TTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAACTAATCA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGACATTTTTGGGAGATAAGAATTCTGGAACACGCGCTCTTTTCTACAATACTTCATTGAGAGTTCTACCAACCTATTGGCAAGGTCCATTCGATCAATCACAGTTGGCCAGAGGTCATAGAGAAGTGGACGGGACACCTGGAAATTTGAAAATTTGTTAAAATAGAATACTGGATTTTTGGAAGAGGGTACTGTAAAACGGGATTTCGTATAGAACAAGATTGGGTTCCACAGCATTTTGATAACGGCTCCAGATGGCTTCGAAATCAATATTTCGAAAAAAGAAAATTTGGGCATCATCTCGCTGCTATTACGGATTATCTGTGAGAAGTTGAGGATTTTTGGTTCAGTAGGGACATCGTTAGAATCGGCAACCCGGGAACAAACGGACACACACACACACAAAAATAGAATTTGTTGATTGTTAATGGTAAGGATTGGCTTGAATTATCAAAATTTAGTAATGTTTCGACAGTTTTAGAACCAAATTCAAGAGAAATTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAACTAATCAATAAAAGACGGTCACAAAAATGTGTAATTGTCGATAAGGAGGATAAAGAAAAGAATAAATAAGTAGGCAGAATGGATCTCAGGAGAACTACCCCACCTGGTCTCACCTGTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCGTTTATGTGTGAAAGTGTGAAAATCTAGGTCACTTCCTTCCCAAGAGCATTCGTCTTATGCAATGCAAATCGTAGATGGGTGCATGGTCCCTGCAGGCGCAGTAATTTATTTCCAGATAAAACTATATTGATCTCAAAAGAAGAAAAAAAAGTTAAGAATTCCGGTTTTTCAGTTATCGGAGGACCGGCAAATTTGGCGTATCCATCAGAAATATCGACCAGAAGAATCATTGATAAACAAAAAAAAGTTGATTTTGAATGTTGACTTTAATAATAATT</canonical>
            <polymorphic>TGGACATTTTTGGGAGATAAGAATTCTGGAACACGCGCTCTTTTCTACAATACTTCATTGAGAGTTCTACCAACCTATTGGCAAGGTCCATTCGATCAATCACAGTTGGCCAGAGGTCATAGAGAAGTGGACGGGACACCTGGAAATTTGAAAATTTGTTAAAATAGAATACTGGATTTTTGGAAGAGGGTACTGTAAAACGGGATTTCGTATAGAACAAGATTGGGTTCCACAGCATTTTGATAACGGCTCCAGATGGCTTCGAAATCAATATTTCGAAAAAAGAAAATTTGGGCATCATCTCGCTGCTATTACGGATTATCTGTGAGAAGTTGAGGATTTTTGGTTCAGTAGGGACATCGTTAGAATCGGCAACCCGGGAACAAACGGACACACACACACACAAAAATAGAATTTGTTGATTGTTAATGGTAAGGATTGGCTTGAATTATCAAAATTTAGTAATGTTTCGACAGTTTTAGAACCAAATTCAAGAGAARTTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAACTAATCAATAAAAGACGGTCACAAAAATGTGTAATTGTCGATAAGGAGGATAAAGAAAAGAATAAATAAGTAGGCAGAATGGATCTCAGGAGAACTACCCCACCTGGTCTCACCTGTCTTCAGAATGTCCTTGATTCTGTCCAATCTTCATACATTAGATAGTGTGACTGACAGTACCGTTTATGTGTGAAAGTGTGAAAATCTAGGTCACTTCCTTCCCAAGAGCATTCGTCTTATGCAATGCAAATCGTAGATGGGTGCATGGTCCCTGCAGGCGCAGTAATTTATTTCCAGATAAAACTATATTGATCTCAAAAGAAGAAAAAAAAGTTAAGAATTCCGGTTTTTCAGTTATCGGAGGACCGGCAAATTTGGCGTATCCATCAGAAATATCGACCAGAAGAATCATTGATAAACAAAAAAAAGTTGATTTTGAATGTTGACTTTAATAATAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>380 135 125 123 89 43 33 32 21 11 8</canonical_bands>
                <polymorphic_bands>391 135 125 123 89 43 33 32 21 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>249 135 125 123 85 77 54 34 33 32 21 11 9 8 4</canonical_bands>
                <polymorphic_bands>249 135 125 123 88 85 54 34 33 32 21 9 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATAGAACAAGATTGGGTTCC</pcr_primer_p1>
		<pcr_primer_p2>TGTGACCGTCTTTTATTGATT</pcr_primer_p2>
		<pcr_amplicon_size>357</pcr_amplicon_size>
		<canonical_amplicon>GTATAGAACAAGATTGGGTTCCACAGCATTTTGATAACGGCTCCAGATGGCTTCGAAATCAATATTTCGAAAAAAGAAAATTTGGGCATCATCTCGCTGCTATTACGGATTATCTGTGAGAAGTTGAGGATTTTTGGTTCAGTAGGGACATCGTTAGAATCGGCAACCCGGGAACAAACGGACACACACACACACAAAAATAGAATTTGTTGATTGTTAATGGTAAGGATTGGCTTGAATTATCAAAATTTAGTAATGTTTCGACAGTTTTAGAACCAAATTCAAGAGAAATTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAACTAATCAATAAAAGACGGTCACA</canonical_amplicon>
		<polymorphic_amplicon>GTATAGAACAAGATTGGGTTCCACAGCATTTTGATAACGGCTCCAGATGGCTTCGAAATCAATATTTCGAAAAAAGAAAATTTGGGCATCATCTCGCTGCTATTACGGATTATCTGTGAGAAGTTGAGGATTTTTGGTTCAGTAGGGACATCGTTAGAATCGGCAACCCGGGAACAAACGGACACACACACACACAAAAATAGAATTTGTTGATTGTTAATGGTAAGGATTGGCTTGAATTATCAAAATTTAGTAATGTTTCGACAGTTTTAGAACCAAATTCAAGAGAARTTTTCAAAGTATTTTTGAAGGAACCGAGACTACAAAAGGTGAACTAATCAATAAAAGACGGTCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23344</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>40442</contig_pos>
        <strand></strand>
        <context>akggaatttt[G/T]gatttggctt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTGCATTGACCTGAGAAATCGAAATTTTTGTTGGAAATATGGAATTTT</left_flank>
        <right_flank>GATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATTTCAGTTTTTTCAAATTTGTTCTAGCTCAATTTTGAAGCGAGTTAAGAGCCTTTGAAGTTTGGAAAAGACGCAGAGAAGCTAGATCTGTCTCGTTGTCTGCGTCTCGTTCTTCCCATTGTGTCTGGTGGTGGGTTCTTTAAAGGCTCATAACTTGCTTCAAAATAGAGCTAGAGAGTTGATGTTAGTCTCATTTTGAAGTTAAAAATTGGCTTAATACCTCATAGGATTTTGGACAGAATTAAGATTTTTTGAAAGCATGAATTTTGATTTCCATTTCTTTATGCTCTAAATAAGAAATTTTTACCTGAATAATGGCTCCATTACAATTGACAGCGGTTCCAGTTGGAAGTGCATCACAAGTTGGGCCAGTGAAATAGTTGGGGCATTTGCATTGATTGCAGTTTTTGGGGTCGGTGAATCCACAGTTTGAGCAGGTCATTTTGGTTTTGCATTGACCTGAGAAATCGAAATTTTTGTTGGAAATATGGAATTTTGGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCGACGGTGCGTCGCGGTTGGAAGATTAAAAATTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACTACATCCAGAAAATGAATATTATGTTTTTTTGAATTCTCAACTGATATTTCAAAATTTTCATACACTTTTGAAGTTTTGAGAAAAAATTGAAAACCTTATACTTCTTTTTTTTCTCTAAACTTGACAACTTTGTGATCTTTGAATTTGGCTTGTTGAGAGCTTCAAAATGAGTATAATCATGCCCTAGTTAGCACGATTTGGATTTTTCGGATGCGTCGCGGTCGTGCGTCACGGTTGGCAGATCGAAATTACAAAATTGAAGGAAATAGGTCTTGTTGGGGCTCATTTTGAAGCTCTTGATGTCAGAAAATCAATTTCACAACTGTCAAAAAATTTTGACTC</canonical>
            <polymorphic>TCATTTCAGTTTTTTCAAATTTGTTCTAGCTCAATTTTGAAGCGAGTTAAGAGCCTTTGAAGTTTGGAAAAGACGCAGAGAAGCTAGATCTGTCTCGTTGTCTGCGTCTCGTTCTTCCCATTGTGTCTGGTGGTGGGTTCTTTAAAGGCTCATAACTTGCTTCAAAATAGAGCTAGAGAGTTGATGTTAGTCTCATTTTGAAGTTAAAAATTGGCTTAATACCTCATAGGATTTTGGACAGAATTAAGATTTTTTGAAAGCATGAATTTTGATTTCCATTTCTTTATGCTCTAAATAAGAAATTTTTACCTGAATAATGGCTCCATTACAATTGACAGCGGTTCCAGTTGGAAGTGCATCACAAGTTGGGCCAGTGAAATAGTTGGGGCATTTGCATTGATTGCAGTTTTTGGGGTCGGTGAATCCACAGTTTGAGCAGGTCATTTTGGTTTTGCATTGACCTGAGAAATCGAAATTTTTGTTGGAAATATGGAATTTTKGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCGACGGTGCGTCGCGGTTGGAAGATTAAAAATTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACTACATCCAGAAAATGAATATTATGTTTTTTTGAATTCTCAACTGATATTTCAAAATTTTCATACACTTTTGAAGTTTTGAGAAAAAATTGAAAACCTTATACTTCTTTTTTTTCTCTAAACTTGACAACTTTGTGATCTTTGAATTTGGCTTGTTGAGAGCTTCAAAATGAGTATAATCATGCCCTAGTTAGCACGATTTGGATTTTTCGGATGCGTCGCGGTCGTGCGTCACGGTTGGCAGATCGAAATTACAAAATTGAAGGAAATAGGTCTTGTTGGGGCTCATTTTGAAGCTCTTGATGTCAGAAAATCAATTTCACAACTGTCAAAAAATTTTGACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTGAGCAGGTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCATTTTCTGGATGTAGTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTGAGCAGGTCATTTTGGTTTTGCATTGACCTGAGAAATCGAAATTTTTGTTGGAAATATGGAATTTTGGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCGACGGTGCGTCGCGGTTGGAAGATTAAAAATTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACTACATCCAGAAAATGAA</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTGAGCAGGTCATTTTGGTTTTGCATTGACCTGAGAAATCGAAATTTTTGTTGGAAATATGGAATTTTKGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCGACGGTGCGTCGCGGTTGGAAGATTAAAAATTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACTACATCCAGAAAATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23345</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>40661</contig_pos>
        <strand></strand>
        <context>aaaattttca[T/G]acacttttga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AATGAATATTATGTTTTTTTGAATTCTCAACTGATATTTCAAAATTTTCA</left_flank>
        <right_flank>ACACTTTTGAAGTTTTGAGAAAAAATTGAAAACCTTATACTTCTTTTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACCTCATAGGATTTTGGACAGAATTAAGATTTTTTGAAAGCATGAATTTTGATTTCCATTTCTTTATGCTCTAAATAAGAAATTTTTACCTGAATAATGGCTCCATTACAATTGACAGCGGTTCCAGTTGGAAGTGCATCACAAGTTGGGCCAGTGAAATAGTTGGGGCATTTGCATTGATTGCAGTTTTTGGGGTCGGTGAATCCACAGTTTGAGCAGGTCATTTTGGTTTTGCATTGACCTGAGAAATCGAAATTTTTGTTGGAAATATGGAATTTTGGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCGACGGTGCGTCGCGGTTGGAAGATTAAAAATTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACTACATCCAGAAAATGAATATTATGTTTTTTTGAATTCTCAACTGATATTTCAAAATTTTCATACACTTTTGAAGTTTTGAGAAAAAATTGAAAACCTTATACTTCTTTTTTTTCTCTAAACTTGACAACTTTGTGATCTTTGAATTTGGCTTGTTGAGAGCTTCAAAATGAGTATAATCATGCCCTAGTTAGCACGATTTGGATTTTTCGGATGCGTCGCGGTCGTGCGTCACGGTTGGCAGATCGAAATTACAAAATTGAAGGAAATAGGTCTTGTTGGGGCTCATTTTGAAGCTCTTGATGTCAGAAAATCAATTTCACAACTGTCAAAAAATTTTGACTCACTTGTACAGTTATAAAGCTTGTTAACTGCAATCAGATCGGAAAACGCTGGTGCCTCTCGTTGTCCCATACTATTTTGCATGCCATTTTCTTTGGCTAGAATCGTGTACTTGGAGGAGTCAAGAGCAAAAGCATCTGAAAATTTTATAGTTTTTTCAAAGACTTCAAACTACAAGCTACAAAAATTATCTTACATGGATAATACTGCATAACACTTCCG</canonical>
            <polymorphic>TACCTCATAGGATTTTGGACAGAATTAAGATTTTTTGAAAGCATGAATTTTGATTTCCATTTCTTTATGCTCTAAATAAGAAATTTTTACCTGAATAATGGCTCCATTACAATTGACAGCGGTTCCAGTTGGAAGTGCATCACAAGTTGGGCCAGTGAAATAGTTGGGGCATTTGCATTGATTGCAGTTTTTGGGGTCGGTGAATCCACAGTTTGAGCAGGTCATTTTGGTTTTGCATTGACCTGAGAAATCGAAATTTTTGTTGGAAATATGGAATTTTGGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCGACGGTGCGTCGCGGTTGGAAGATTAAAAATTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACTACATCCAGAAAATGAATATTATGTTTTTTTGAATTCTCAACTGATATTTCAAAATTTTCAKACACTTTTGAAGTTTTGAGAAAAAATTGAAAACCTTATACTTCTTTTTTTTCTCTAAACTTGACAACTTTGTGATCTTTGAATTTGGCTTGTTGAGAGCTTCAAAATGAGTATAATCATGCCCTAGTTAGCACGATTTGGATTTTTCGGATGCGTCGCGGTCGTGCGTCACGGTTGGCAGATCGAAATTACAAAATTGAAGGAAATAGGTCTTGTTGGGGCTCATTTTGAAGCTCTTGATGTCAGAAAATCAATTTCACAACTGTCAAAAAATTTTGACTCACTTGTACAGTTATAAAGCTTGTTAACTGCAATCAGATCGGAAAACGCTGGTGCCTCTCGTTGTCCCATACTATTTTGCATGCCATTTTCTTTGGCTAGAATCGTGTACTTGGAGGAGTCAAGAGCAAAAGCATCTGAAAATTTTATAGTTTTTTCAAAGACTTCAAACTACAAGCTACAAAAATTATCTTACATGGATAATACTGCATAACACTTCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTACTACATCCAGAAAATGAA</pcr_primer_p1>
		<pcr_primer_p2>TGATTGCAGTTAACAAGCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>384</pcr_amplicon_size>
		<canonical_amplicon>GCTTACTACATCCAGAAAATGAATATTATGTTTTTTTGAATTCTCAACTGATATTTCAAAATTTTCATACACTTTTGAAGTTTTGAGAAAAAATTGAAAACCTTATACTTCTTTTTTTTCTCTAAACTTGACAACTTTGTGATCTTTGAATTTGGCTTGTTGAGAGCTTCAAAATGAGTATAATCATGCCCTAGTTAGCACGATTTGGATTTTTCGGATGCGTCGCGGTCGTGCGTCACGGTTGGCAGATCGAAATTACAAAATTGAAGGAAATAGGTCTTGTTGGGGCTCATTTTGAAGCTCTTGATGTCAGAAAATCAATTTCACAACTGTCAAAAAATTTTGACTCACTTGTACAGTTATAAAGCTTGTTAACTGCAATCA</canonical_amplicon>
		<polymorphic_amplicon>GCTTACTACATCCAGAAAATGAATATTATGTTTTTTTGAATTCTCAACTGATATTTCAAAATTTTCAKACACTTTTGAAGTTTTGAGAAAAAATTGAAAACCTTATACTTCTTTTTTTTCTCTAAACTTGACAACTTTGTGATCTTTGAATTTGGCTTGTTGAGAGCTTCAAAATGAGTATAATCATGCCCTAGTTAGCACGATTTGGATTTTTCGGATGCGTCGCGGTCGTGCGTCACGGTTGGCAGATCGAAATTACAAAATTGAAGGAAATAGGTCTTGTTGGGGCTCATTTTGAAGCTCTTGATGTCAGAAAATCAATTTCACAACTGTCAAAAAATTTTGACTCACTTGTACAGTTATAAAGCTTGTTAACTGCAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23346</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>40673</contig_pos>
        <strand></strand>
        <context>cacttttgaa[G/A]ttttgagaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTTTTTTTGAATTCTCAACTGATATTTCAAAATTTTCATACACTTTTGAA</left_flank>
        <right_flank>TTTTGAGAAAAAATTGAAAACCTTATACTTCTTTTTTTTCTCTAAACTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGGACAGAATTAAGATTTTTTGAAAGCATGAATTTTGATTTCCATTTCTTTATGCTCTAAATAAGAAATTTTTACCTGAATAATGGCTCCATTACAATTGACAGCGGTTCCAGTTGGAAGTGCATCACAAGTTGGGCCAGTGAAATAGTTGGGGCATTTGCATTGATTGCAGTTTTTGGGGTCGGTGAATCCACAGTTTGAGCAGGTCATTTTGGTTTTGCATTGACCTGAGAAATCGAAATTTTTGTTGGAAATATGGAATTTTGGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCGACGGTGCGTCGCGGTTGGAAGATTAAAAATTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACTACATCCAGAAAATGAATATTATGTTTTTTTGAATTCTCAACTGATATTTCAAAATTTTCATACACTTTTGAAGTTTTGAGAAAAAATTGAAAACCTTATACTTCTTTTTTTTCTCTAAACTTGACAACTTTGTGATCTTTGAATTTGGCTTGTTGAGAGCTTCAAAATGAGTATAATCATGCCCTAGTTAGCACGATTTGGATTTTTCGGATGCGTCGCGGTCGTGCGTCACGGTTGGCAGATCGAAATTACAAAATTGAAGGAAATAGGTCTTGTTGGGGCTCATTTTGAAGCTCTTGATGTCAGAAAATCAATTTCACAACTGTCAAAAAATTTTGACTCACTTGTACAGTTATAAAGCTTGTTAACTGCAATCAGATCGGAAAACGCTGGTGCCTCTCGTTGTCCCATACTATTTTGCATGCCATTTTCTTTGGCTAGAATCGTGTACTTGGAGGAGTCAAGAGCAAAAGCATCTGAAAATTTTATAGTTTTTTCAAAGACTTCAAACTACAAGCTACAAAAATTATCTTACATGGATAATACTGCATAACACTTCCGTAATCATATTTT</canonical>
            <polymorphic>TTTTGGACAGAATTAAGATTTTTTGAAAGCATGAATTTTGATTTCCATTTCTTTATGCTCTAAATAAGAAATTTTTACCTGAATAATGGCTCCATTACAATTGACAGCGGTTCCAGTTGGAAGTGCATCACAAGTTGGGCCAGTGAAATAGTTGGGGCATTTGCATTGATTGCAGTTTTTGGGGTCGGTGAATCCACAGTTTGAGCAGGTCATTTTGGTTTTGCATTGACCTGAGAAATCGAAATTTTTGTTGGAAATATGGAATTTTGGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCGACGGTGCGTCGCGGTTGGAAGATTAAAAATTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACTACATCCAGAAAATGAATATTATGTTTTTTTGAATTCTCAACTGATATTTCAAAATTTTCATACACTTTTGAARTTTTGAGAAAAAATTGAAAACCTTATACTTCTTTTTTTTCTCTAAACTTGACAACTTTGTGATCTTTGAATTTGGCTTGTTGAGAGCTTCAAAATGAGTATAATCATGCCCTAGTTAGCACGATTTGGATTTTTCGGATGCGTCGCGGTCGTGCGTCACGGTTGGCAGATCGAAATTACAAAATTGAAGGAAATAGGTCTTGTTGGGGCTCATTTTGAAGCTCTTGATGTCAGAAAATCAATTTCACAACTGTCAAAAAATTTTGACTCACTTGTACAGTTATAAAGCTTGTTAACTGCAATCAGATCGGAAAACGCTGGTGCCTCTCGTTGTCCCATACTATTTTGCATGCCATTTTCTTTGGCTAGAATCGTGTACTTGGAGGAGTCAAGAGCAAAAGCATCTGAAAATTTTATAGTTTTTTCAAAGACTTCAAACTACAAGCTACAAAAATTATCTTACATGGATAATACTGCATAACACTTCCGTAATCATATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTACTACATCCAGAAAATGAA</pcr_primer_p1>
		<pcr_primer_p2>TGATTGCAGTTAACAAGCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>384</pcr_amplicon_size>
		<canonical_amplicon>GCTTACTACATCCAGAAAATGAATATTATGTTTTTTTGAATTCTCAACTGATATTTCAAAATTTTCATACACTTTTGAAGTTTTGAGAAAAAATTGAAAACCTTATACTTCTTTTTTTTCTCTAAACTTGACAACTTTGTGATCTTTGAATTTGGCTTGTTGAGAGCTTCAAAATGAGTATAATCATGCCCTAGTTAGCACGATTTGGATTTTTCGGATGCGTCGCGGTCGTGCGTCACGGTTGGCAGATCGAAATTACAAAATTGAAGGAAATAGGTCTTGTTGGGGCTCATTTTGAAGCTCTTGATGTCAGAAAATCAATTTCACAACTGTCAAAAAATTTTGACTCACTTGTACAGTTATAAAGCTTGTTAACTGCAATCA</canonical_amplicon>
		<polymorphic_amplicon>GCTTACTACATCCAGAAAATGAATATTATGTTTTTTTGAATTCTCAACTGATATTTCAAAATTTTCATACACTTTTGAARTTTTGAGAAAAAATTGAAAACCTTATACTTCTTTTTTTTCTCTAAACTTGACAACTTTGTGATCTTTGAATTTGGCTTGTTGAGAGCTTCAAAATGAGTATAATCATGCCCTAGTTAGCACGATTTGGATTTTTCGGATGCGTCGCGGTCGTGCGTCACGGTTGGCAGATCGAAATTACAAAATTGAAGGAAATAGGTCTTGTTGGGGCTCATTTTGAAGCTCTTGATGTCAGAAAATCAATTTCACAACTGTCAAAAAATTTTGACTCACTTGTACAGTTATAAAGCTTGTTAACTGCAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23347</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>40784</contig_pos>
        <strand></strand>
        <context>taatcatgcc[C/T]tagttagcac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATCTTTGAATTTGGCTTGTTGAGAGCTTCAAAATGAGTATAATCATGCC</left_flank>
        <right_flank>TAGTTAGCACGATTTGGATTTTTCGGATGCGTCGCGGTCGTGCGTCACGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAGTTGGAAGTGCATCACAAGTTGGGCCAGTGAAATAGTTGGGGCATTTGCATTGATTGCAGTTTTTGGGGTCGGTGAATCCACAGTTTGAGCAGGTCATTTTGGTTTTGCATTGACCTGAGAAATCGAAATTTTTGTTGGAAATATGGAATTTTGGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCGACGGTGCGTCGCGGTTGGAAGATTAAAAATTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACTACATCCAGAAAATGAATATTATGTTTTTTTGAATTCTCAACTGATATTTCAAAATTTTCATACACTTTTGAAGTTTTGAGAAAAAATTGAAAACCTTATACTTCTTTTTTTTCTCTAAACTTGACAACTTTGTGATCTTTGAATTTGGCTTGTTGAGAGCTTCAAAATGAGTATAATCATGCCCTAGTTAGCACGATTTGGATTTTTCGGATGCGTCGCGGTCGTGCGTCACGGTTGGCAGATCGAAATTACAAAATTGAAGGAAATAGGTCTTGTTGGGGCTCATTTTGAAGCTCTTGATGTCAGAAAATCAATTTCACAACTGTCAAAAAATTTTGACTCACTTGTACAGTTATAAAGCTTGTTAACTGCAATCAGATCGGAAAACGCTGGTGCCTCTCGTTGTCCCATACTATTTTGCATGCCATTTTCTTTGGCTAGAATCGTGTACTTGGAGGAGTCAAGAGCAAAAGCATCTGAAAATTTTATAGTTTTTTCAAAGACTTCAAACTACAAGCTACAAAAATTATCTTACATGGATAATACTGCATAACACTTCCGTAATCATATTTTAGCGCCAAAAGTTGTGCCTGGTCCAATGGCATCTTCTGGAAGTTATAGGCTTGACTTGGGATGATGTTACTGAAATCCACGTAGACATAATCATCACGATCCGAACGAGAT</canonical>
            <polymorphic>TCCAGTTGGAAGTGCATCACAAGTTGGGCCAGTGAAATAGTTGGGGCATTTGCATTGATTGCAGTTTTTGGGGTCGGTGAATCCACAGTTTGAGCAGGTCATTTTGGTTTTGCATTGACCTGAGAAATCGAAATTTTTGTTGGAAATATGGAATTTTGGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCGACGGTGCGTCGCGGTTGGAAGATTAAAAATTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACTACATCCAGAAAATGAATATTATGTTTTTTTGAATTCTCAACTGATATTTCAAAATTTTCATACACTTTTGAAGTTTTGAGAAAAAATTGAAAACCTTATACTTCTTTTTTTTCTCTAAACTTGACAACTTTGTGATCTTTGAATTTGGCTTGTTGAGAGCTTCAAAATGAGTATAATCATGCCYTAGTTAGCACGATTTGGATTTTTCGGATGCGTCGCGGTCGTGCGTCACGGTTGGCAGATCGAAATTACAAAATTGAAGGAAATAGGTCTTGTTGGGGCTCATTTTGAAGCTCTTGATGTCAGAAAATCAATTTCACAACTGTCAAAAAATTTTGACTCACTTGTACAGTTATAAAGCTTGTTAACTGCAATCAGATCGGAAAACGCTGGTGCCTCTCGTTGTCCCATACTATTTTGCATGCCATTTTCTTTGGCTAGAATCGTGTACTTGGAGGAGTCAAGAGCAAAAGCATCTGAAAATTTTATAGTTTTTTCAAAGACTTCAAACTACAAGCTACAAAAATTATCTTACATGGATAATACTGCATAACACTTCCGTAATCATATTTTAGCGCCAAAAGTTGTGCCTGGTCCAATGGCATCTTCTGGAAGTTATAGGCTTGACTTGGGATGATGTTACTGAAATCCACGTAGACATAATCATCACGATCCGAACGAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 254 246</canonical_bands>
                <polymorphic_bands>754 246</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTACTACATCCAGAAAATGAA</pcr_primer_p1>
		<pcr_primer_p2>TGATTGCAGTTAACAAGCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>384</pcr_amplicon_size>
		<canonical_amplicon>GCTTACTACATCCAGAAAATGAATATTATGTTTTTTTGAATTCTCAACTGATATTTCAAAATTTTCATACACTTTTGAAGTTTTGAGAAAAAATTGAAAACCTTATACTTCTTTTTTTTCTCTAAACTTGACAACTTTGTGATCTTTGAATTTGGCTTGTTGAGAGCTTCAAAATGAGTATAATCATGCCCTAGTTAGCACGATTTGGATTTTTCGGATGCGTCGCGGTCGTGCGTCACGGTTGGCAGATCGAAATTACAAAATTGAAGGAAATAGGTCTTGTTGGGGCTCATTTTGAAGCTCTTGATGTCAGAAAATCAATTTCACAACTGTCAAAAAATTTTGACTCACTTGTACAGTTATAAAGCTTGTTAACTGCAATCA</canonical_amplicon>
		<polymorphic_amplicon>GCTTACTACATCCAGAAAATGAATATTATGTTTTTTTGAATTCTCAACTGATATTTCAAAATTTTCATACACTTTTGAAGTTTTGAGAAAAAATTGAAAACCTTATACTTCTTTTTTTTCTCTAAACTTGACAACTTTGTGATCTTTGAATTTGGCTTGTTGAGAGCTTCAAAATGAGTATAATCATGCCYTAGTTAGCACGATTTGGATTTTTCGGATGCGTCGCGGTCGTGCGTCACGGTTGGCAGATCGAAATTACAAAATTGAAGGAAATAGGTCTTGTTGGGGCTCATTTTGAAGCTCTTGATGTCAGAAAATCAATTTCACAACTGTCAAAAAATTTTGACTCACTTGTACAGTTATAAAGCTTGTTAACTGCAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23348</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>40907</contig_pos>
        <strand></strand>
        <context>ttgatgtcag[A/G]aaatcaattt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAAGGAAATAGGTCTTGTTGGGGCTCATTTTGAAGCTCTTGATGTCAG</left_flank>
        <right_flank>AAATCAATTTCACAACTGTCAAAAAATTTTGACTCACTTGTACAGTTATA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAATCGAAATTTTTGTTGGAAATATGGAATTTTGGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCGACGGTGCGTCGCGGTTGGAAGATTAAAAATTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACTACATCCAGAAAATGAATATTATGTTTTTTTGAATTCTCAACTGATATTTCAAAATTTTCATACACTTTTGAAGTTTTGAGAAAAAATTGAAAACCTTATACTTCTTTTTTTTCTCTAAACTTGACAACTTTGTGATCTTTGAATTTGGCTTGTTGAGAGCTTCAAAATGAGTATAATCATGCCCTAGTTAGCACGATTTGGATTTTTCGGATGCGTCGCGGTCGTGCGTCACGGTTGGCAGATCGAAATTACAAAATTGAAGGAAATAGGTCTTGTTGGGGCTCATTTTGAAGCTCTTGATGTCAGAAAATCAATTTCACAACTGTCAAAAAATTTTGACTCACTTGTACAGTTATAAAGCTTGTTAACTGCAATCAGATCGGAAAACGCTGGTGCCTCTCGTTGTCCCATACTATTTTGCATGCCATTTTCTTTGGCTAGAATCGTGTACTTGGAGGAGTCAAGAGCAAAAGCATCTGAAAATTTTATAGTTTTTTCAAAGACTTCAAACTACAAGCTACAAAAATTATCTTACATGGATAATACTGCATAACACTTCCGTAATCATATTTTAGCGCCAAAAGTTGTGCCTGGTCCAATGGCATCTTCTGGAAGTTATAGGCTTGACTTGGGATGATGTTACTGAAATCCACGTAGACATAATCATCACGATCCGAACGAGATTGTTGGTGCCAGAAGCCGATTGCGTGCATTAGTTCGTGGGTGGCGGTTCCGAGCTGCAAAAACAATCGAAATCTTAATTTTCAAGGGTTAAAACTATAAGTTTCAAATTTGGCTCGTTGAGAG</canonical>
            <polymorphic>GAAATCGAAATTTTTGTTGGAAATATGGAATTTTGGATTTGGCTTATCGCAAGCTTCAAAATAAGTATAATCATGCCCTAATTTGGATGACATTGATTTTTCGAAGGCGTCGCGACGGTGCGTCGCGGTTGGAAGATTAAAAATTTAAATATGAGCGAAATAGGGCAATATGGGTATAATTTTGAAGCTTACTACATCCAGAAAATGAATATTATGTTTTTTTGAATTCTCAACTGATATTTCAAAATTTTCATACACTTTTGAAGTTTTGAGAAAAAATTGAAAACCTTATACTTCTTTTTTTTCTCTAAACTTGACAACTTTGTGATCTTTGAATTTGGCTTGTTGAGAGCTTCAAAATGAGTATAATCATGCCCTAGTTAGCACGATTTGGATTTTTCGGATGCGTCGCGGTCGTGCGTCACGGTTGGCAGATCGAAATTACAAAATTGAAGGAAATAGGTCTTGTTGGGGCTCATTTTGAAGCTCTTGATGTCAGRAAATCAATTTCACAACTGTCAAAAAATTTTGACTCACTTGTACAGTTATAAAGCTTGTTAACTGCAATCAGATCGGAAAACGCTGGTGCCTCTCGTTGTCCCATACTATTTTGCATGCCATTTTCTTTGGCTAGAATCGTGTACTTGGAGGAGTCAAGAGCAAAAGCATCTGAAAATTTTATAGTTTTTTCAAAGACTTCAAACTACAAGCTACAAAAATTATCTTACATGGATAATACTGCATAACACTTCCGTAATCATATTTTAGCGCCAAAAGTTGTGCCTGGTCCAATGGCATCTTCTGGAAGTTATAGGCTTGACTTGGGATGATGTTACTGAAATCCACGTAGACATAATCATCACGATCCGAACGAGATTGTTGGTGCCAGAAGCCGATTGCGTGCATTAGTTCGTGGGTGGCGGTTCCGAGCTGCAAAAACAATCGAAATCTTAATTTTCAAGGGTTAAAACTATAAGTTTCAAATTTGGCTCGTTGAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>402 197 96 96 73 72 59 5</canonical_bands>
                <polymorphic_bands>402 197 168 96 73 59 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTACTACATCCAGAAAATGAA</pcr_primer_p1>
		<pcr_primer_p2>TGATTGCAGTTAACAAGCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>384</pcr_amplicon_size>
		<canonical_amplicon>GCTTACTACATCCAGAAAATGAATATTATGTTTTTTTGAATTCTCAACTGATATTTCAAAATTTTCATACACTTTTGAAGTTTTGAGAAAAAATTGAAAACCTTATACTTCTTTTTTTTCTCTAAACTTGACAACTTTGTGATCTTTGAATTTGGCTTGTTGAGAGCTTCAAAATGAGTATAATCATGCCCTAGTTAGCACGATTTGGATTTTTCGGATGCGTCGCGGTCGTGCGTCACGGTTGGCAGATCGAAATTACAAAATTGAAGGAAATAGGTCTTGTTGGGGCTCATTTTGAAGCTCTTGATGTCAGAAAATCAATTTCACAACTGTCAAAAAATTTTGACTCACTTGTACAGTTATAAAGCTTGTTAACTGCAATCA</canonical_amplicon>
		<polymorphic_amplicon>GCTTACTACATCCAGAAAATGAATATTATGTTTTTTTGAATTCTCAACTGATATTTCAAAATTTTCATACACTTTTGAAGTTTTGAGAAAAAATTGAAAACCTTATACTTCTTTTTTTTCTCTAAACTTGACAACTTTGTGATCTTTGAATTTGGCTTGTTGAGAGCTTCAAAATGAGTATAATCATGCCCTAGTTAGCACGATTTGGATTTTTCGGATGCGTCGCGGTCGTGCGTCACGGTTGGCAGATCGAAATTACAAAATTGAAGGAAATAGGTCTTGTTGGGGCTCATTTTGAAGCTCTTGATGTCAGRAAATCAATTTCACAACTGTCAAAAAATTTTGACTCACTTGTACAGTTATAAAGCTTGTTAACTGCAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23349</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>74533</contig_pos>
        <strand>-</strand>
        <context>AAATTATTAT[A/G]AAATTTGTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGAAACTCAAAAATCCTGAAATTCCTATCTTTATTATCAAAATTATTAT</left_flank>
        <right_flank>AAATTTGTTGAAATTCTAAAACTTTTCAAAAATTGAAAAATCTAAAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTTTTTGGAAATTTCGAACTGCAACCTTCATATCATTGCTCAGCTCGTTGAGAGCTTTAAAATGAGCCTAAACACGACTAGATTCAGAATTTTTAAAGGGTTACTGTAGTTTTCGTGGTGAGACCCAATTTTCTTCAATTTTGAGCTAATATGGTCGTGTTTGGGCTCATTTTGAAGCATTTTTTGCGCTGATTACGGTTATTGGTGTATAAATAACTATTTACAGCGTTTTTCAGCTCTTTTCAGTCTTTTTTTTTCTAGGAGACCGTGATGGTTCCAAAATTCCGAAAATTTTAAAAATTCTGAAATTTGAAAATAATCTTTAAAACTCAGAAAACTTAAGTTTTGAAAAATCCAAAAATTCCAAAACTCTGAAATTTGAAAATCCTAAAATTTTGAAAATCTTATAATTCTGAAAATTTCAAAAATTCAAAAATTCAAAAATTCTGGAAACTCAAAAATCCTGAAATTCCTATCTTTATTATCAAAATTATTATTAAATTTGTTGAAATTCTAAAACTTTTCAAAAATTGAAAAATCTAAAAATTTCCAAAATCGAAAATTCGAAAACTTTAGAAATTCTAAAATTTGACAATAATTTTTGAAAGTTTCGAAATTCGAGAAAAATCAAAAAATGCTGAAAATCCAAAAAATCTGAATTCTCTGAAAATTGAATTTTAAAATTCCAAAAAAAAAGCCCTTTAATCTATTCGGAAGTTCAAAATTGCTAAAAATTTGAATGTTTGAAAATTTGAAAATTCGAAAAAAGTACCAAAAAAATTAAAAAATCACAAAAATGCAAAAATTCAGTCAAATTTTAGAATTTTAGAATTTTTTTAAATTTTTAAATTTTCGAATTTCAGAATATTTGAGTTTCAGAATTTTTGAATTTTCGAATTTCAGAATATTTGAGTTCCAGAATTTTTGAATTTTCGAATTTCGGAATATTTGAGTTTCAGAATTTTCGAATTTCAGAATATTTGAGTTTCAGAATTTTC</canonical>
            <polymorphic>TTGTTTTTGGAAATTTCGAACTGCAACCTTCATATCATTGCTCAGCTCGTTGAGAGCTTTAAAATGAGCCTAAACACGACTAGATTCAGAATTTTTAAAGGGTTACTGTAGTTTTCGTGGTGAGACCCAATTTTCTTCAATTTTGAGCTAATATGGTCGTGTTTGGGCTCATTTTGAAGCATTTTTTGCGCTGATTACGGTTATTGGTGTATAAATAACTATTTACAGCGTTTTTCAGCTCTTTTCAGTCTTTTTTTTTCTAGGAGACCGTGATGGTTCCAAAATTCCGAAAATTTTAAAAATTCTGAAATTTGAAAATAATCTTTAAAACTCAGAAAACTTAAGTTTTGAAAAATCCAAAAATTCCAAAACTCTGAAATTTGAAAATCCTAAAATTTTGAAAATCTTATAATTCTGAAAATTTCAAAAATTCAAAAATTCAAAAATTCTGGAAACTCAAAAATCCTGAAATTCCTATCTTTATTATCAAAATTATTATRAAATTTGTTGAAATTCTAAAACTTTTCAAAAATTGAAAAATCTAAAAATTTCCAAAATCGAAAATTCGAAAACTTTAGAAATTCTAAAATTTGACAATAATTTTTGAAAGTTTCGAAATTCGAGAAAAATCAAAAAATGCTGAAAATCCAAAAAATCTGAATTCTCTGAAAATTGAATTTTAAAATTCCAAAAAAAAAGCCCTTTAATCTATTCGGAAGTTCAAAATTGCTAAAAATTTGAATGTTTGAAAATTTGAAAATTCGAAAAAAGTACCAAAAAAATTAAAAAATCACAAAAATGCAAAAATTCAGTCAAATTTTAGAATTTTAGAATTTTTTTAAATTTTTAAATTTTCGAATTTCAGAATATTTGAGTTTCAGAATTTTTGAATTTTCGAATTTCAGAATATTTGAGTTCCAGAATTTTTGAATTTTCGAATTTCGGAATATTTGAGTTTCAGAATTTTCGAATTTCAGAATATTTGAGTTTCAGAATTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>201 181 158 153 79 59 56 36 29 24 16 8</canonical_bands>
                <polymorphic_bands>339 201 153 79 59 56 36 29 24 16 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTAGGAGACCGTGATG</pcr_primer_p1>
		<pcr_primer_p2>TCGATTTTGGAAATTTTTAGAT</pcr_primer_p2>
		<pcr_amplicon_size>306</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTAGGAGACCGTGATGGTTCCAAAATTCCGAAAATTTTAAAAATTCTGAAATTTGAAAATAATCTTTAAAACTCAGAAAACTTAAGTTTTGAAAAATCCAAAAATTCCAAAACTCTGAAATTTGAAAATCCTAAAATTTTGAAAATCTTATAATTCTGAAAATTTCAAAAATTCAAAAATTCAAAAATTCTGGAAACTCAAAAATCCTGAAATTCCTATCTTTATTATCAAAATTATTATTAAATTTGTTGAAATTCTAAAACTTTTCAAAAATTGAAAAATCTAAAAATTTCCAAAATCGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTAGGAGACCGTGATGGTTCCAAAATTCCGAAAATTTTAAAAATTCTGAAATTTGAAAATAATCTTTAAAACTCAGAAAACTTAAGTTTTGAAAAATCCAAAAATTCCAAAACTCTGAAATTTGAAAATCCTAAAATTTTGAAAATCTTATAATTCTGAAAATTTCAAAAATTCAAAAATTCAAAAATTCTGGAAACTCAAAAATCCTGAAATTCCTATCTTTATTATCAAAATTATTATRAAATTTGTTGAAATTCTAAAACTTTTCAAAAATTGAAAAATCTAAAAATTTCCAAAATCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23350</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>74605</contig_pos>
        <strand>-</strand>
        <context>AAATTCGAAA[C/T]CTTTAGAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTTCAAAAATTGAAAAATCTAAAAATTTCCAAAATCGAAAATTCGAAA</left_flank>
        <right_flank>CTTTAGAAATTCTAAAATTTGACAATAATTTTTGAAAGTTTCGAAATTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACACGACTAGATTCAGAATTTTTAAAGGGTTACTGTAGTTTTCGTGGTGAGACCCAATTTTCTTCAATTTTGAGCTAATATGGTCGTGTTTGGGCTCATTTTGAAGCATTTTTTGCGCTGATTACGGTTATTGGTGTATAAATAACTATTTACAGCGTTTTTCAGCTCTTTTCAGTCTTTTTTTTTCTAGGAGACCGTGATGGTTCCAAAATTCCGAAAATTTTAAAAATTCTGAAATTTGAAAATAATCTTTAAAACTCAGAAAACTTAAGTTTTGAAAAATCCAAAAATTCCAAAACTCTGAAATTTGAAAATCCTAAAATTTTGAAAATCTTATAATTCTGAAAATTTCAAAAATTCAAAAATTCAAAAATTCTGGAAACTCAAAAATCCTGAAATTCCTATCTTTATTATCAAAATTATTATTAAATTTGTTGAAATTCTAAAACTTTTCAAAAATTGAAAAATCTAAAAATTTCCAAAATCGAAAATTCGAAAACTTTAGAAATTCTAAAATTTGACAATAATTTTTGAAAGTTTCGAAATTCGAGAAAAATCAAAAAATGCTGAAAATCCAAAAAATCTGAATTCTCTGAAAATTGAATTTTAAAATTCCAAAAAAAAAGCCCTTTAATCTATTCGGAAGTTCAAAATTGCTAAAAATTTGAATGTTTGAAAATTTGAAAATTCGAAAAAAGTACCAAAAAAATTAAAAAATCACAAAAATGCAAAAATTCAGTCAAATTTTAGAATTTTAGAATTTTTTTAAATTTTTAAATTTTCGAATTTCAGAATATTTGAGTTTCAGAATTTTTGAATTTTCGAATTTCAGAATATTTGAGTTCCAGAATTTTTGAATTTTCGAATTTCGGAATATTTGAGTTTCAGAATTTTCGAATTTCAGAATATTTGAGTTTCAGAATTTTCGAATTTCAGAATATTTGAGTTTCAGAATTTTCGAATTTCAGAATATTTGAGTTTCAGAATTTTCGAATTTCA</canonical>
            <polymorphic>AACACGACTAGATTCAGAATTTTTAAAGGGTTACTGTAGTTTTCGTGGTGAGACCCAATTTTCTTCAATTTTGAGCTAATATGGTCGTGTTTGGGCTCATTTTGAAGCATTTTTTGCGCTGATTACGGTTATTGGTGTATAAATAACTATTTACAGCGTTTTTCAGCTCTTTTCAGTCTTTTTTTTTCTAGGAGACCGTGATGGTTCCAAAATTCCGAAAATTTTAAAAATTCTGAAATTTGAAAATAATCTTTAAAACTCAGAAAACTTAAGTTTTGAAAAATCCAAAAATTCCAAAACTCTGAAATTTGAAAATCCTAAAATTTTGAAAATCTTATAATTCTGAAAATTTCAAAAATTCAAAAATTCAAAAATTCTGGAAACTCAAAAATCCTGAAATTCCTATCTTTATTATCAAAATTATTATTAAATTTGTTGAAATTCTAAAACTTTTCAAAAATTGAAAAATCTAAAAATTTCCAAAATCGAAAATTCGAAAYCTTTAGAAATTCTAAAATTTGACAATAATTTTTGAAAGTTTCGAAATTCGAGAAAAATCAAAAAATGCTGAAAATCCAAAAAATCTGAATTCTCTGAAAATTGAATTTTAAAATTCCAAAAAAAAAGCCCTTTAATCTATTCGGAAGTTCAAAATTGCTAAAAATTTGAATGTTTGAAAATTTGAAAATTCGAAAAAAGTACCAAAAAAATTAAAAAATCACAAAAATGCAAAAATTCAGTCAAATTTTAGAATTTTAGAATTTTTTTAAATTTTTAAATTTTCGAATTTCAGAATATTTGAGTTTCAGAATTTTTGAATTTTCGAATTTCAGAATATTTGAGTTCCAGAATTTTTGAATTTTCGAATTTCGGAATATTTGAGTTTCAGAATTTTCGAATTTCAGAATATTTGAGTTTCAGAATTTTCGAATTTCAGAATATTTGAGTTTCAGAATTTTCGAATTTCAGAATATTTGAGTTTCAGAATTTTCGAATTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTAGGAGACCGTGATG</pcr_primer_p1>
		<pcr_primer_p2>TTTGGATTTTCAGCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>397</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTAGGAGACCGTGATGGTTCCAAAATTCCGAAAATTTTAAAAATTCTGAAATTTGAAAATAATCTTTAAAACTCAGAAAACTTAAGTTTTGAAAAATCCAAAAATTCCAAAACTCTGAAATTTGAAAATCCTAAAATTTTGAAAATCTTATAATTCTGAAAATTTCAAAAATTCAAAAATTCAAAAATTCTGGAAACTCAAAAATCCTGAAATTCCTATCTTTATTATCAAAATTATTATTAAATTTGTTGAAATTCTAAAACTTTTCAAAAATTGAAAAATCTAAAAATTTCCAAAATCGAAAATTCGAAAACTTTAGAAATTCTAAAATTTGACAATAATTTTTGAAAGTTTCGAAATTCGAGAAAAATCAAAAAATGCTGAAAATCCAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTAGGAGACCGTGATGGTTCCAAAATTCCGAAAATTTTAAAAATTCTGAAATTTGAAAATAATCTTTAAAACTCAGAAAACTTAAGTTTTGAAAAATCCAAAAATTCCAAAACTCTGAAATTTGAAAATCCTAAAATTTTGAAAATCTTATAATTCTGAAAATTTCAAAAATTCAAAAATTCAAAAATTCTGGAAACTCAAAAATCCTGAAATTCCTATCTTTATTATCAAAATTATTATTAAATTTGTTGAAATTCTAAAACTTTTCAAAAATTGAAAAATCTAAAAATTTCCAAAATCGAAAATTCGAAAYCTTTAGAAATTCTAAAATTTGACAATAATTTTTGAAAGTTTCGAAATTCGAGAAAAATCAAAAAATGCTGAAAATCCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23351</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>74621</contig_pos>
        <strand>-</strand>
        <context>GAAATTCTAA[A/C]ATTTGACAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATCTAAAAATTTCCAAAATCGAAAATTCGAAAACTTTAGAAATTCTAA</left_flank>
        <right_flank>ATTTGACAATAATTTTTGAAAGTTTCGAAATTCGAGAAAAATCAAAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTTTTAAAGGGTTACTGTAGTTTTCGTGGTGAGACCCAATTTTCTTCAATTTTGAGCTAATATGGTCGTGTTTGGGCTCATTTTGAAGCATTTTTTGCGCTGATTACGGTTATTGGTGTATAAATAACTATTTACAGCGTTTTTCAGCTCTTTTCAGTCTTTTTTTTTCTAGGAGACCGTGATGGTTCCAAAATTCCGAAAATTTTAAAAATTCTGAAATTTGAAAATAATCTTTAAAACTCAGAAAACTTAAGTTTTGAAAAATCCAAAAATTCCAAAACTCTGAAATTTGAAAATCCTAAAATTTTGAAAATCTTATAATTCTGAAAATTTCAAAAATTCAAAAATTCAAAAATTCTGGAAACTCAAAAATCCTGAAATTCCTATCTTTATTATCAAAATTATTATTAAATTTGTTGAAATTCTAAAACTTTTCAAAAATTGAAAAATCTAAAAATTTCCAAAATCGAAAATTCGAAAACTTTAGAAATTCTAAAATTTGACAATAATTTTTGAAAGTTTCGAAATTCGAGAAAAATCAAAAAATGCTGAAAATCCAAAAAATCTGAATTCTCTGAAAATTGAATTTTAAAATTCCAAAAAAAAAGCCCTTTAATCTATTCGGAAGTTCAAAATTGCTAAAAATTTGAATGTTTGAAAATTTGAAAATTCGAAAAAAGTACCAAAAAAATTAAAAAATCACAAAAATGCAAAAATTCAGTCAAATTTTAGAATTTTAGAATTTTTTTAAATTTTTAAATTTTCGAATTTCAGAATATTTGAGTTTCAGAATTTTTGAATTTTCGAATTTCAGAATATTTGAGTTCCAGAATTTTTGAATTTTCGAATTTCGGAATATTTGAGTTTCAGAATTTTCGAATTTCAGAATATTTGAGTTTCAGAATTTTCGAATTTCAGAATATTTGAGTTTCAGAATTTTCGAATTTCAGAATATTTGAGTTTCAGAATTTTCGAATTTCAGAATATTTGAGTTTCA</canonical>
            <polymorphic>GAATTTTTAAAGGGTTACTGTAGTTTTCGTGGTGAGACCCAATTTTCTTCAATTTTGAGCTAATATGGTCGTGTTTGGGCTCATTTTGAAGCATTTTTTGCGCTGATTACGGTTATTGGTGTATAAATAACTATTTACAGCGTTTTTCAGCTCTTTTCAGTCTTTTTTTTTCTAGGAGACCGTGATGGTTCCAAAATTCCGAAAATTTTAAAAATTCTGAAATTTGAAAATAATCTTTAAAACTCAGAAAACTTAAGTTTTGAAAAATCCAAAAATTCCAAAACTCTGAAATTTGAAAATCCTAAAATTTTGAAAATCTTATAATTCTGAAAATTTCAAAAATTCAAAAATTCAAAAATTCTGGAAACTCAAAAATCCTGAAATTCCTATCTTTATTATCAAAATTATTATTAAATTTGTTGAAATTCTAAAACTTTTCAAAAATTGAAAAATCTAAAAATTTCCAAAATCGAAAATTCGAAAACTTTAGAAATTCTAAMATTTGACAATAATTTTTGAAAGTTTCGAAATTCGAGAAAAATCAAAAAATGCTGAAAATCCAAAAAATCTGAATTCTCTGAAAATTGAATTTTAAAATTCCAAAAAAAAAGCCCTTTAATCTATTCGGAAGTTCAAAATTGCTAAAAATTTGAATGTTTGAAAATTTGAAAATTCGAAAAAAGTACCAAAAAAATTAAAAAATCACAAAAATGCAAAAATTCAGTCAAATTTTAGAATTTTAGAATTTTTTTAAATTTTTAAATTTTCGAATTTCAGAATATTTGAGTTTCAGAATTTTTGAATTTTCGAATTTCAGAATATTTGAGTTCCAGAATTTTTGAATTTTCGAATTTCGGAATATTTGAGTTTCAGAATTTTCGAATTTCAGAATATTTGAGTTTCAGAATTTTCGAATTTCAGAATATTTGAGTTTCAGAATTTTCGAATTTCAGAATATTTGAGTTTCAGAATTTTCGAATTTCAGAATATTTGAGTTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>193 53 51 47 43 35 32 29 26 25 24 24 24 24 24 24 23 17 16 16 16 16 16 10 10 10 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 1</canonical_bands>
                <polymorphic_bands>193 53 51 47 43 37 35 32 26 25 24 24 24 24 24 24 23 17 16 16 16 16 16 10 10 10 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 1</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>144 53 43 41 39 25 25 24 24 24 24 24 24 23 22 21 19 18 17 17 16 16 16 16 16 11 11 11 10 10 10 10 10 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 5 1</canonical_bands>
                <polymorphic_bands>144 53 43 41 39 25 25 24 24 24 24 24 24 23 22 21 19 19 18 17 17 16 16 16 16 16 11 11 10 10 10 10 10 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 5 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTAGGAGACCGTGATG</pcr_primer_p1>
		<pcr_primer_p2>TTTGGATTTTCAGCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>397</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTAGGAGACCGTGATGGTTCCAAAATTCCGAAAATTTTAAAAATTCTGAAATTTGAAAATAATCTTTAAAACTCAGAAAACTTAAGTTTTGAAAAATCCAAAAATTCCAAAACTCTGAAATTTGAAAATCCTAAAATTTTGAAAATCTTATAATTCTGAAAATTTCAAAAATTCAAAAATTCAAAAATTCTGGAAACTCAAAAATCCTGAAATTCCTATCTTTATTATCAAAATTATTATTAAATTTGTTGAAATTCTAAAACTTTTCAAAAATTGAAAAATCTAAAAATTTCCAAAATCGAAAATTCGAAAACTTTAGAAATTCTAAAATTTGACAATAATTTTTGAAAGTTTCGAAATTCGAGAAAAATCAAAAAATGCTGAAAATCCAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTAGGAGACCGTGATGGTTCCAAAATTCCGAAAATTTTAAAAATTCTGAAATTTGAAAATAATCTTTAAAACTCAGAAAACTTAAGTTTTGAAAAATCCAAAAATTCCAAAACTCTGAAATTTGAAAATCCTAAAATTTTGAAAATCTTATAATTCTGAAAATTTCAAAAATTCAAAAATTCAAAAATTCTGGAAACTCAAAAATCCTGAAATTCCTATCTTTATTATCAAAATTATTATTAAATTTGTTGAAATTCTAAAACTTTTCAAAAATTGAAAAATCTAAAAATTTCCAAAATCGAAAATTCGAAAACTTTAGAAATTCTAAMATTTGACAATAATTTTTGAAAGTTTCGAAATTCGAGAAAAATCAAAAAATGCTGAAAATCCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23352</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>77862</contig_pos>
        <strand>+</strand>
        <context>TTTTGATTTT[A/C]CTCGAATTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAATTTTCAGAGAATTCAGATTTTTTGGATTTTCAGCATTTTTTGATTTT</left_flank>
        <right_flank>CTCGAATTTCGAAACTTTCAAAAATTATTGTCAAATTTTAGAATTTCTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATCGATTTTGGATCAAAATAGGCGGAGTTACGTTATCTTAGATCATAACTCGGCCCATTTTGATCCTAGAGGTCTGGTTTTCATATCAATCAATTGGAAGTGGAATTTTGAACGATTCCATATTACTCGCATTTTAATTTGCTACGGATTAGTGCAAAATTCAGAGATTTTGGATCAAAATGGGCGGGGCTAGGGGCATTTGACTGCTTTCAAGCATAGCTCCGCACATTTTGATTCAAAACCGATTATTTTTGCATCAATCGAATAAAAATTGAGTTTTATACAAACTCAAACTACTCACGATTCAGTTCTCTATTGATTGGTACAAAAATCAGCGATTTTGGATCAAAATGGGCGGAGTTATGACCATTNNNNNNNNNNTCAAATTTTTAGCAATTTTGAACTTCCGAATAGATTAAAGGGCTTTTTTTTTGGAATTTTAAAATTCAATTTTCAGAGAATTCAGATTTTTTGGATTTTCAGCATTTTTTGATTTTTCTCGAATTTCGAAACTTTCAAAAATTATTGTCAAATTTTAGAATTTCTAAAGTTTTCGAATTTTCGATTTTGGAAATTTTTAGATTTTTCAATTTTTGAAAAGTTTTAGAATTTCAACAAATTTAATAATAATTTTGATAATAAAGATAGGAATTTCAGGATTTTTGAGTTTCCAGAATTTTTGAATTTTTGAATTTTTGAAATTTTCAGAATTATAAGATTTTCAAAATTTTAGGATTTTCAAATTTCAGAGTTTTGGAATTTTTGGATTTTTCAAAACTTAAGTTCTCCGAGCATTTTGATCCAAAATCGATAATTTTGTTACAGATCGGTAGGAGATTTATTCTTGGATAACATGAAGAATGTGAATTTCGTTTAGTACAGAAATCAGATTTCGAGGATCAAAGTGGGCGGAGTTAGGGCCTTTTAACTGTTCTTGGTTGGTAGCTCCGCCCATATTGATTCGAAATTGCTGATTTTTATATCAATTGAGTGGAAAT</canonical>
            <polymorphic>TTATCGATTTTGGATCAAAATAGGCGGAGTTACGTTATCTTAGATCATAACTCGGCCCATTTTGATCCTAGAGGTCTGGTTTTCATATCAATCAATTGGAAGTGGAATTTTGAACGATTCCATATTACTCGCATTTTAATTTGCTACGGATTAGTGCAAAATTCAGAGATTTTGGATCAAAATGGGCGGGGCTAGGGGCATTTGACTGCTTTCAAGCATAGCTCCGCACATTTTGATTCAAAACCGATTATTTTTGCATCAATCGAATAAAAATTGAGTTTTATACAAACTCAAACTACTCACGATTCAGTTCTCTATTGATTGGTACAAAAATCAGCGATTTTGGATCAAAATGGGCGGAGTTATGACCATTNNNNNNNNNNTCAAATTTTTAGCAATTTTGAACTTCCGAATAGATTAAAGGGCTTTTTTTTTGGAATTTTAAAATTCAATTTTCAGAGAATTCAGATTTTTTGGATTTTCAGCATTTTTTGATTTTMCTCGAATTTCGAAACTTTCAAAAATTATTGTCAAATTTTAGAATTTCTAAAGTTTTCGAATTTTCGATTTTGGAAATTTTTAGATTTTTCAATTTTTGAAAAGTTTTAGAATTTCAACAAATTTAATAATAATTTTGATAATAAAGATAGGAATTTCAGGATTTTTGAGTTTCCAGAATTTTTGAATTTTTGAATTTTTGAAATTTTCAGAATTATAAGATTTTCAAAATTTTAGGATTTTCAAATTTCAGAGTTTTGGAATTTTTGGATTTTTCAAAACTTAAGTTCTCCGAGCATTTTGATCCAAAATCGATAATTTTGTTACAGATCGGTAGGAGATTTATTCTTGGATAACATGAAGAATGTGAATTTCGTTTAGTACAGAAATCAGATTTCGAGGATCAAAGTGGGCGGAGTTAGGGCCTTTTAACTGTTCTTGGTTGGTAGCTCCGCCCATATTGATTCGAAATTGCTGATTTTTATATCAATTGAGTGGAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>327 301 200 156 16</canonical_bands>
                <polymorphic_bands>356 327 301 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTTGAACTTCCGAATAGATTA</pcr_primer_p1>
		<pcr_primer_p2>GAAAAATCTAAAAATTTCCAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>194</pcr_amplicon_size>
		<canonical_amplicon>AATTTTGAACTTCCGAATAGATTAAAGGGCTTTTTTTTTGGAATTTTAAAATTCAATTTTCAGAGAATTCAGATTTTTTGGATTTTCAGCATTTTTTGATTTTTCTCGAATTTCGAAACTTTCAAAAATTATTGTCAAATTTTAGAATTTCTAAAGTTTTCGAATTTTCGATTTTGGAAATTTTTAGATTTTTC</canonical_amplicon>
		<polymorphic_amplicon>AATTTTGAACTTCCGAATAGATTAAAGGGCTTTTTTTTTGGAATTTTAAAATTCAATTTTCAGAGAATTCAGATTTTTTGGATTTTCAGCATTTTTTGATTTTMCTCGAATTTCGAAACTTTCAAAAATTATTGTCAAATTTTAGAATTTCTAAAGTTTTCGAATTTTCGATTTTGGAAATTTTTAGATTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23353</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>102153</contig_pos>
        <strand></strand>
        <context>acatagaaga[G/T]mcgcagagaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAGATATGCGCTTTTAAAGTTGGTGCACCTCATCCACCGACATAGAAGA</left_flank>
        <right_flank>ACGCAGAGAATCGAGACGCTCTCGCTTCTCTGCGTCTCTCAAATTTGGTC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGAAATGTACTGTAGTAGTTGGTTTTTTGAAAGTTCATGTGTACTTATTTTCAATTTTAAAGGTTTAGCATAAATTTTGAAAATGGTTTTTTCGTAGTTAGGTATGTGCCGCTATGGACACATGAAGGCTCTGTCTTTAAAGGCGCATATCTCGAAAACGAAGATTGTTACTAAAAAACGATCAACTTAAAAAATAGAAAACATAAAATTTGCTACAATTTATTAGTTGACAATTTTTTGATAGCTCATTTAGTTTTTGAGATATGTGCCTTTAAAGTTGAGGTACCTTTTAAGCGAGACTGACCGCTGCCTAAAGCGCGCGGCAACTTTAAAGGCGCATATCTCAAAAACCAAGTTAGCTATCAAAAAACAGTTAACTACAATTTTGTAGAGCCTAAAATTTTACACGATTTTGTAGATGGTCGTTTTTTGATAGCTTTACTATCGTGAGATATGCGCTTTTAAAGTTGGTGCACCTCATCCACCGACATAGAAGAGACGCAGAGAATCGAGACGCTCTCGCTTCTCTGCGTCTCTCAAATTTGGTCGAAAATGTTGTTTAACCTTTTTATTTTTTGCCCAGAATAATTTTTCAATTGAAAATAAAAATAGAATTCCTGAATTTTTGCCAGTAAAAGCTTCAAATTTACCGAGATTTGAAAAATTCCAAAATCCAAAACTTCAGTGAAATCCTAAGAACTACTGTAACTCAGTCATTTTTGTATCAAACTTGATGAAAACTATACCAATCGATTTGACTTGAAAAGAGCTTCAAAATGAGTATAAAGTGTAAAGTATAAATTTTTTGAAAATTCAGTTTTGGCGCCGAATTCAAACTTTAAAGGCGCAAAGCTGGGCCAACGTTTTACAAAAAAAACCGTATCTCGGTGAATTTTCGACCAAACTCAATAAACCGTATACCAATCAATTTGTCTTGAAAAGAGCTTTAAGATGAGTATAAACATGAAAAATTCAAAAATTCCGTTTTGGCGCTAAAT</canonical>
            <polymorphic>AAGGAAATGTACTGTAGTAGTTGGTTTTTTGAAAGTTCATGTGTACTTATTTTCAATTTTAAAGGTTTAGCATAAATTTTGAAAATGGTTTTTTCGTAGTTAGGTATGTGCCGCTATGGACACATGAAGGCTCTGTCTTTAAAGGCGCATATCTCGAAAACGAAGATTGTTACTAAAAAACGATCAACTTAAAAAATAGAAAACATAAAATTTGCTACAATTTATTAGTTGACAATTTTTTGATAGCTCATTTAGTTTTTGAGATATGTGCCTTTAAAGTTGAGGTACCTTTTAAGCGAGACTGACCGCTGCCTAAAGCGCGCGGCAACTTTAAAGGCGCATATCTCAAAAACCAAGTTAGCTATCAAAAAACAGTTAACTACAATTTTGTAGAGCCTAAAATTTTACACGATTTTGTAGATGGTCGTTTTTTGATAGCTTTACTATCGTGAGATATGCGCTTTTAAAGTTGGTGCACCTCATCCACCGACATAGAAGAKACGCAGAGAATCGAGACGCTCTCGCTTCTCTGCGTCTCTCAAATTTGGTCGAAAATGTTGTTTAACCTTTTTATTTTTTGCCCAGAATAATTTTTCAATTGAAAATAAAAATAGAATTCCTGAATTTTTGCCAGTAAAAGCTTCAAATTTACCGAGATTTGAAAAATTCCAAAATCCAAAACTTCAGTGAAATCCTAAGAACTACTGTAACTCAGTCATTTTTGTATCAAACTTGATGAAAACTATACCAATCGATTTGACTTGAAAAGAGCTTCAAAATGAGTATAAAGTGTAAAGTATAAATTTTTTGAAAATTCAGTTTTGGCGCCGAATTCAAACTTTAAAGGCGCAAAGCTGGGCCAACGTTTTACAAAAAAAACCGTATCTCGGTGAATTTTCGACCAAACTCAATAAACCGTATACCAATCAATTTGTCTTGAAAAGAGCTTTAAGATGAGTATAAACATGAAAAATTCAAAAATTCCGTTTTGGCGCTAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGGACACATGAAGGCTCT</pcr_primer_p1>
		<pcr_primer_p2>GAATTTTTCAAATCTCGGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>555</pcr_amplicon_size>
		<canonical_amplicon>TATGGACACATGAAGGCTCTGTCTTTAAAGGCGCATATCTCGAAAACGAAGATTGTTACTAAAAAACGATCAACTTAAAAAATAGAAAACATAAAATTTGCTACAATTTATTAGTTGACAATTTTTTGATAGCTCATTTAGTTTTTGAGATATGTGCCTTTAAAGTTGAGGTACCTTTTAAGCGAGACTGACCGCTGCCTAAAGCGCGCGGCAACTTTAAAGGCGCATATCTCAAAAACCAAGTTAGCTATCAAAAAACAGTTAACTACAATTTTGTAGAGCCTAAAATTTTACACGATTTTGTAGATGGTCGTTTTTTGATAGCTTTACTATCGTGAGATATGCGCTTTTAAAGTTGGTGCACCTCATCCACCGACATAGAAGAGACGCAGAGAATCGAGACGCTCTCGCTTCTCTGCGTCTCTCAAATTTGGTCGAAAATGTTGTTTAACCTTTTTATTTTTTGCCCAGAATAATTTTTCAATTGAAAATAAAAATAGAATTCCTGAATTTTTGCCAGTAAAAGCTTCAAATTTACCGAGATTTGAAAAATTC</canonical_amplicon>
		<polymorphic_amplicon>TATGGACACATGAAGGCTCTGTCTTTAAAGGCGCATATCTCGAAAACGAAGATTGTTACTAAAAAACGATCAACTTAAAAAATAGAAAACATAAAATTTGCTACAATTTATTAGTTGACAATTTTTTGATAGCTCATTTAGTTTTTGAGATATGTGCCTTTAAAGTTGAGGTACCTTTTAAGCGAGACTGACCGCTGCCTAAAGCGCGCGGCAACTTTAAAGGCGCATATCTCAAAAACCAAGTTAGCTATCAAAAAACAGTTAACTACAATTTTGTAGAGCCTAAAATTTTACACGATTTTGTAGATGGTCGTTTTTTGATAGCTTTACTATCGTGAGATATGCGCTTTTAAAGTTGGTGCACCTCATCCACCGACATAGAAGAKACGCAGAGAATCGAGACGCTCTCGCTTCTCTGCGTCTCTCAAATTTGGTCGAAAATGTTGTTTAACCTTTTTATTTTTTGCCCAGAATAATTTTTCAATTGAAAATAAAAATAGAATTCCTGAATTTTTGCCAGTAAAAGCTTCAAATTTACCGAGATTTGAAAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23354</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>102154</contig_pos>
        <strand></strand>
        <context>catagaagak[A/C]cgcagagaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAGATATGCGCTTTTAAAGTTGGTGCACCTCATCCACCGACATAGAAGAG</left_flank>
        <right_flank>CGCAGAGAATCGAGACGCTCTCGCTTCTCTGCGTCTCTCAAATTTGGTCG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGAAATGTACTGTAGTAGTTGGTTTTTTGAAAGTTCATGTGTACTTATTTTCAATTTTAAAGGTTTAGCATAAATTTTGAAAATGGTTTTTTCGTAGTTAGGTATGTGCCGCTATGGACACATGAAGGCTCTGTCTTTAAAGGCGCATATCTCGAAAACGAAGATTGTTACTAAAAAACGATCAACTTAAAAAATAGAAAACATAAAATTTGCTACAATTTATTAGTTGACAATTTTTTGATAGCTCATTTAGTTTTTGAGATATGTGCCTTTAAAGTTGAGGTACCTTTTAAGCGAGACTGACCGCTGCCTAAAGCGCGCGGCAACTTTAAAGGCGCATATCTCAAAAACCAAGTTAGCTATCAAAAAACAGTTAACTACAATTTTGTAGAGCCTAAAATTTTACACGATTTTGTAGATGGTCGTTTTTTGATAGCTTTACTATCGTGAGATATGCGCTTTTAAAGTTGGTGCACCTCATCCACCGACATAGAAGAGACGCAGAGAATCGAGACGCTCTCGCTTCTCTGCGTCTCTCAAATTTGGTCGAAAATGTTGTTTAACCTTTTTATTTTTTGCCCAGAATAATTTTTCAATTGAAAATAAAAATAGAATTCCTGAATTTTTGCCAGTAAAAGCTTCAAATTTACCGAGATTTGAAAAATTCCAAAATCCAAAACTTCAGTGAAATCCTAAGAACTACTGTAACTCAGTCATTTTTGTATCAAACTTGATGAAAACTATACCAATCGATTTGACTTGAAAAGAGCTTCAAAATGAGTATAAAGTGTAAAGTATAAATTTTTTGAAAATTCAGTTTTGGCGCCGAATTCAAACTTTAAAGGCGCAAAGCTGGGCCAACGTTTTACAAAAAAAACCGTATCTCGGTGAATTTTCGACCAAACTCAATAAACCGTATACCAATCAATTTGTCTTGAAAAGAGCTTTAAGATGAGTATAAACATGAAAAATTCAAAAATTCCGTTTTGGCGCTAAATT</canonical>
            <polymorphic>AGGAAATGTACTGTAGTAGTTGGTTTTTTGAAAGTTCATGTGTACTTATTTTCAATTTTAAAGGTTTAGCATAAATTTTGAAAATGGTTTTTTCGTAGTTAGGTATGTGCCGCTATGGACACATGAAGGCTCTGTCTTTAAAGGCGCATATCTCGAAAACGAAGATTGTTACTAAAAAACGATCAACTTAAAAAATAGAAAACATAAAATTTGCTACAATTTATTAGTTGACAATTTTTTGATAGCTCATTTAGTTTTTGAGATATGTGCCTTTAAAGTTGAGGTACCTTTTAAGCGAGACTGACCGCTGCCTAAAGCGCGCGGCAACTTTAAAGGCGCATATCTCAAAAACCAAGTTAGCTATCAAAAAACAGTTAACTACAATTTTGTAGAGCCTAAAATTTTACACGATTTTGTAGATGGTCGTTTTTTGATAGCTTTACTATCGTGAGATATGCGCTTTTAAAGTTGGTGCACCTCATCCACCGACATAGAAGAGMCGCAGAGAATCGAGACGCTCTCGCTTCTCTGCGTCTCTCAAATTTGGTCGAAAATGTTGTTTAACCTTTTTATTTTTTGCCCAGAATAATTTTTCAATTGAAAATAAAAATAGAATTCCTGAATTTTTGCCAGTAAAAGCTTCAAATTTACCGAGATTTGAAAAATTCCAAAATCCAAAACTTCAGTGAAATCCTAAGAACTACTGTAACTCAGTCATTTTTGTATCAAACTTGATGAAAACTATACCAATCGATTTGACTTGAAAAGAGCTTCAAAATGAGTATAAAGTGTAAAGTATAAATTTTTTGAAAATTCAGTTTTGGCGCCGAATTCAAACTTTAAAGGCGCAAAGCTGGGCCAACGTTTTACAAAAAAAACCGTATCTCGGTGAATTTTCGACCAAACTCAATAAACCGTATACCAATCAATTTGTCTTGAAAAGAGCTTTAAGATGAGTATAAACATGAAAAATTCAAAAATTCCGTTTTGGCGCTAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGGACACATGAAGGCTCT</pcr_primer_p1>
		<pcr_primer_p2>GAATTTTTCAAATCTCGGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>555</pcr_amplicon_size>
		<canonical_amplicon>TATGGACACATGAAGGCTCTGTCTTTAAAGGCGCATATCTCGAAAACGAAGATTGTTACTAAAAAACGATCAACTTAAAAAATAGAAAACATAAAATTTGCTACAATTTATTAGTTGACAATTTTTTGATAGCTCATTTAGTTTTTGAGATATGTGCCTTTAAAGTTGAGGTACCTTTTAAGCGAGACTGACCGCTGCCTAAAGCGCGCGGCAACTTTAAAGGCGCATATCTCAAAAACCAAGTTAGCTATCAAAAAACAGTTAACTACAATTTTGTAGAGCCTAAAATTTTACACGATTTTGTAGATGGTCGTTTTTTGATAGCTTTACTATCGTGAGATATGCGCTTTTAAAGTTGGTGCACCTCATCCACCGACATAGAAGAGACGCAGAGAATCGAGACGCTCTCGCTTCTCTGCGTCTCTCAAATTTGGTCGAAAATGTTGTTTAACCTTTTTATTTTTTGCCCAGAATAATTTTTCAATTGAAAATAAAAATAGAATTCCTGAATTTTTGCCAGTAAAAGCTTCAAATTTACCGAGATTTGAAAAATTC</canonical_amplicon>
		<polymorphic_amplicon>TATGGACACATGAAGGCTCTGTCTTTAAAGGCGCATATCTCGAAAACGAAGATTGTTACTAAAAAACGATCAACTTAAAAAATAGAAAACATAAAATTTGCTACAATTTATTAGTTGACAATTTTTTGATAGCTCATTTAGTTTTTGAGATATGTGCCTTTAAAGTTGAGGTACCTTTTAAGCGAGACTGACCGCTGCCTAAAGCGCGCGGCAACTTTAAAGGCGCATATCTCAAAAACCAAGTTAGCTATCAAAAAACAGTTAACTACAATTTTGTAGAGCCTAAAATTTTACACGATTTTGTAGATGGTCGTTTTTTGATAGCTTTACTATCGTGAGATATGCGCTTTTAAAGTTGGTGCACCTCATCCACCGACATAGAAGAGMCGCAGAGAATCGAGACGCTCTCGCTTCTCTGCGTCTCTCAAATTTGGTCGAAAATGTTGTTTAACCTTTTTATTTTTTGCCCAGAATAATTTTTCAATTGAAAATAAAAATAGAATTCCTGAATTTTTGCCAGTAAAAGCTTCAAATTTACCGAGATTTGAAAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23355</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>106083</contig_pos>
        <strand></strand>
        <context>ctttaaagtt[T/A]aacagacttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TACAAATTGTTGATAGCTATTTTAGCTCTGAGGTATGCACCTTTAAAGTT</left_flank>
        <right_flank>AACAGACTTTGAAAGGTATGGTTTTTTGAAATGGCTATATCTCAAGAATA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCGTTTTTGAGATATGCGCCTTTAAAGTTAGGACACCCTACCCAAGTGTTACAAAGAGAAAAAAACCCAGAAAAAGGGAAACAAATTTAAGCACCTGTCTCCTCCGTGTGTCGAATGCATAAGCTCCGGTTTCCATTTTTTTTTGGGATTTCCAGAAAAAAATTGTTACCTACAAAGACAAAAAAAAACGGAGAGATTGATTGATGATACGTTTTTTTGTTTGTTTGTCACCCTCGTATTACTCCAAAAACGGGGAAAAAACACACTGAATGGATAATAGTGGGGAAAAAATAGAAAAGATAGAGAACAAATTTTCTGGAAGGGAGAGAGAAAAAAGAAAATAGAGAGACTTTGAGAAAAATACAACAACAAGGAGTAGTAGAATAATGCGATTTTGTAGATTATAAAAATGGCAAAAATAGAACAAAAGAACATTTCTTGGTCGTTTACAAATTGTTGATAGCTATTTTAGCTCTGAGGTATGCACCTTTAAAGTTTAACAGACTTTGAAAGGTATGGTTTTTTGAAATGGCTATATCTCAAGAATAAAAAATGCTATCACAAATTTGCTAACTACAAAAATGTAGAGCATAAAATTTTACACATTTTGTTAATTAAAAACTTTTTGATATATGTTTTAGTTTTCTAGCTATACGCCTTTAAAGGCCGCGTGTCTCTGCGCCCTCTCTCTCACTTGGCGCAGAGGTATGCCGTCTTTAAAGACGCATATCTCTAAAGGCAGAAAATCAATCTAACTTTTGTAAAATATCGAAATGTAGAGAATCAAATTCTGCACATTTTATCAGTTAACAACTTTTTGATAGCATTTTTAGTTTTTGGGCTATGCGCTTTTAAAGCTTGGGGTGCCTCTGCGCCTTTTCCGCTCTTGGCGCAGAGGTATGCTTTGTTTAAAGGCGCATATATCCAGAACCAAAACAACCATTCAGTTTTTGTGAATTACAAAAAAGTAAAGTATAAAATTTTACACACGATGTTAC</canonical>
            <polymorphic>CTTCGTTTTTGAGATATGCGCCTTTAAAGTTAGGACACCCTACCCAAGTGTTACAAAGAGAAAAAAACCCAGAAAAAGGGAAACAAATTTAAGCACCTGTCTCCTCCGTGTGTCGAATGCATAAGCTCCGGTTTCCATTTTTTTTTGGGATTTCCAGAAAAAAATTGTTACCTACAAAGACAAAAAAAAACGGAGAGATTGATTGATGATACGTTTTTTTGTTTGTTTGTCACCCTCGTATTACTCCAAAAACGGGGAAAAAACACACTGAATGGATAATAGTGGGGAAAAAATAGAAAAGATAGAGAACAAATTTTCTGGAAGGGAGAGAGAAAAAAGAAAATAGAGAGACTTTGAGAAAAATACAACAACAAGGAGTAGTAGAATAATGCGATTTTGTAGATTATAAAAATGGCAAAAATAGAACAAAAGAACATTTCTTGGTCGTTTACAAATTGTTGATAGCTATTTTAGCTCTGAGGTATGCACCTTTAAAGTTWAACAGACTTTGAAAGGTATGGTTTTTTGAAATGGCTATATCTCAAGAATAAAAAATGCTATCACAAATTTGCTAACTACAAAAATGTAGAGCATAAAATTTTACACATTTTGTTAATTAAAAACTTTTTGATATATGTTTTAGTTTTCTAGCTATACGCCTTTAAAGGCCGCGTGTCTCTGCGCCCTCTCTCTCACTTGGCGCAGAGGTATGCCGTCTTTAAAGACGCATATCTCTAAAGGCAGAAAATCAATCTAACTTTTGTAAAATATCGAAATGTAGAGAATCAAATTCTGCACATTTTATCAGTTAACAACTTTTTGATAGCATTTTTAGTTTTTGGGCTATGCGCTTTTAAAGCTTGGGGTGCCTCTGCGCCTTTTCCGCTCTTGGCGCAGAGGTATGCTTTGTTTAAAGGCGCATATATCCAGAACCAAAACAACCATTCAGTTTTTGTGAATTACAAAAAAGTAAAGTATAAAATTTTACACACGATGTTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>403 114 90 89 65 57 57 45 45 24 7 4</canonical_bands>
                <polymorphic_bands>403 121 90 89 65 57 57 45 45 24 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAAAAATACAACAACAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTATTCATCTTGTTCATCCT</pcr_primer_p2>
		<pcr_amplicon_size>1000</pcr_amplicon_size>
		<canonical_amplicon>GAGAAAAATACAACAACAAGGAGTAGTAGAATAATGCGATTTTGTAGATTATAAAAATGGCAAAAATAGAACAAAAGAACATTTCTTGGTCGTTTACAAATTGTTGATAGCTATTTTAGCTCTGAGGTATGCACCTTTAAAGTTTAACAGACTTTGAAAGGTATGGT</canonical_amplicon>
		<polymorphic_amplicon>GAGAAAAATACAACAACAAGGAGTAGTAGAATAATGCGATTTTGTAGATTATAAAAATGGCAAAAATAGAACAAAAGAACATTTCTTGGTCGTTTACAAATTGTTGATAGCTATTTTAGCTCTGAGGTATGCACCTTTAAAGTTWAACAGACTTTGAAAGGTATGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23356</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>106144</contig_pos>
        <strand></strand>
        <context>aaaaatgcta[T/G]yacaaawttg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GAAAGGTATGGTTTTTTGAAATGGCTATATCTCAAGAATAAAAAATGCTA</left_flank>
        <right_flank>CACAAATTTGCTAACTACAAAAATGTAGAGCATAAAATTTTACACATTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAACCCAGAAAAAGGGAAACAAATTTAAGCACCTGTCTCCTCCGTGTGTCGAATGCATAAGCTCCGGTTTCCATTTTTTTTTGGGATTTCCAGAAAAAAATTGTTACCTACAAAGACAAAAAAAAACGGAGAGATTGATTGATGATACGTTTTTTTGTTTGTTTGTCACCCTCGTATTACTCCAAAAACGGGGAAAAAACACACTGAATGGATAATAGTGGGGAAAAAATAGAAAAGATAGAGAACAAATTTTCTGGAAGGGAGAGAGAAAAAAGAAAATAGAGAGACTTTGAGAAAAATACAACAACAAGGAGTAGTAGAATAATGCGATTTTGTAGATTATAAAAATGGCAAAAATAGAACAAAAGAACATTTCTTGGTCGTTTACAAATTGTTGATAGCTATTTTAGCTCTGAGGTATGCACCTTTAAAGTTTAACAGACTTTGAAAGGTATGGTTTTTTGAAATGGCTATATCTCAAGAATAAAAAATGCTATCACAAATTTGCTAACTACAAAAATGTAGAGCATAAAATTTTACACATTTTGTTAATTAAAAACTTTTTGATATATGTTTTAGTTTTCTAGCTATACGCCTTTAAAGGCCGCGTGTCTCTGCGCCCTCTCTCTCACTTGGCGCAGAGGTATGCCGTCTTTAAAGACGCATATCTCTAAAGGCAGAAAATCAATCTAACTTTTGTAAAATATCGAAATGTAGAGAATCAAATTCTGCACATTTTATCAGTTAACAACTTTTTGATAGCATTTTTAGTTTTTGGGCTATGCGCTTTTAAAGCTTGGGGTGCCTCTGCGCCTTTTCCGCTCTTGGCGCAGAGGTATGCTTTGTTTAAAGGCGCATATATCCAGAACCAAAACAACCATTCAGTTTTTGTGAATTACAAAAAAGTAAAGTATAAAATTTTACACACGATGTTACTTTACAACTTTTAGATAACTATTTTTGTTCTTAAGGTATGCGCCTTTAAATATAGGGCGCC</canonical>
            <polymorphic>AAAAAACCCAGAAAAAGGGAAACAAATTTAAGCACCTGTCTCCTCCGTGTGTCGAATGCATAAGCTCCGGTTTCCATTTTTTTTTGGGATTTCCAGAAAAAAATTGTTACCTACAAAGACAAAAAAAAACGGAGAGATTGATTGATGATACGTTTTTTTGTTTGTTTGTCACCCTCGTATTACTCCAAAAACGGGGAAAAAACACACTGAATGGATAATAGTGGGGAAAAAATAGAAAAGATAGAGAACAAATTTTCTGGAAGGGAGAGAGAAAAAAGAAAATAGAGAGACTTTGAGAAAAATACAACAACAAGGAGTAGTAGAATAATGCGATTTTGTAGATTATAAAAATGGCAAAAATAGAACAAAAGAACATTTCTTGGTCGTTTACAAATTGTTGATAGCTATTTTAGCTCTGAGGTATGCACCTTTAAAGTTTAACAGACTTTGAAAGGTATGGTTTTTTGAAATGGCTATATCTCAAGAATAAAAAATGCTAKCACAAATTTGCTAACTACAAAAATGTAGAGCATAAAATTTTACACATTTTGTTAATTAAAAACTTTTTGATATATGTTTTAGTTTTCTAGCTATACGCCTTTAAAGGCCGCGTGTCTCTGCGCCCTCTCTCTCACTTGGCGCAGAGGTATGCCGTCTTTAAAGACGCATATCTCTAAAGGCAGAAAATCAATCTAACTTTTGTAAAATATCGAAATGTAGAGAATCAAATTCTGCACATTTTATCAGTTAACAACTTTTTGATAGCATTTTTAGTTTTTGGGCTATGCGCTTTTAAAGCTTGGGGTGCCTCTGCGCCTTTTCCGCTCTTGGCGCAGAGGTATGCTTTGTTTAAAGGCGCATATATCCAGAACCAAAACAACCATTCAGTTTTTGTGAATTACAAAAAAGTAAAGTATAAAATTTTACACACGATGTTACTTTACAACTTTTAGATAACTATTTTTGTTCTTAAGGTATGCGCCTTTAAATATAGGGCGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAAAATACAACAACAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTATTCATCTTGTTCATCCT</pcr_primer_p2>
		<pcr_amplicon_size>1000</pcr_amplicon_size>
		<canonical_amplicon>GAGAAAAATACAACAACAAGGAGTAGTAGAATAATGCGATTTTGTAGATTATAAAAATGGCAAAAATAGAACAAAAGAACATTTCTTGGTCGTTTACAAATTGTTGATAGCTATTTTAGCTCTGAGGTATGCACCTTTAAAGTTTAACAGACTTTGAAAGGTATGGTTTTTTGAAATGGCTATATCTCAAGAATAAAAAATGCTATCACAAATTTGCTAACTACAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAGAAAAATACAACAACAAGGAGTAGTAGAATAATGCGATTTTGTAGATTATAAAAATGGCAAAAATAGAACAAAAGAACATTTCTTGGTCGTTTACAAATTGTTGATAGCTATTTTAGCTCTGAGGTATGCACCTTTAAAGTTTAACAGACTTTGAAAGGTATGGTTTTTTGAAATGGCTATATCTCAAGAATAAAAAATGCTAKCACAAATTTGCTAACTACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23357</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>106145</contig_pos>
        <strand></strand>
        <context>aaaatgctak[C/T]acaaawttgy</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGGTATGGTTTTTTGAAATGGCTATATCTCAAGAATAAAAAATGCTAT</left_flank>
        <right_flank>ACAAATTTGCTAACTACAAAAATGTAGAGCATAAAATTTTACACATTTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAACCCAGAAAAAGGGAAACAAATTTAAGCACCTGTCTCCTCCGTGTGTCGAATGCATAAGCTCCGGTTTCCATTTTTTTTTGGGATTTCCAGAAAAAAATTGTTACCTACAAAGACAAAAAAAAACGGAGAGATTGATTGATGATACGTTTTTTTGTTTGTTTGTCACCCTCGTATTACTCCAAAAACGGGGAAAAAACACACTGAATGGATAATAGTGGGGAAAAAATAGAAAAGATAGAGAACAAATTTTCTGGAAGGGAGAGAGAAAAAAGAAAATAGAGAGACTTTGAGAAAAATACAACAACAAGGAGTAGTAGAATAATGCGATTTTGTAGATTATAAAAATGGCAAAAATAGAACAAAAGAACATTTCTTGGTCGTTTACAAATTGTTGATAGCTATTTTAGCTCTGAGGTATGCACCTTTAAAGTTTAACAGACTTTGAAAGGTATGGTTTTTTGAAATGGCTATATCTCAAGAATAAAAAATGCTATCACAAATTTGCTAACTACAAAAATGTAGAGCATAAAATTTTACACATTTTGTTAATTAAAAACTTTTTGATATATGTTTTAGTTTTCTAGCTATACGCCTTTAAAGGCCGCGTGTCTCTGCGCCCTCTCTCTCACTTGGCGCAGAGGTATGCCGTCTTTAAAGACGCATATCTCTAAAGGCAGAAAATCAATCTAACTTTTGTAAAATATCGAAATGTAGAGAATCAAATTCTGCACATTTTATCAGTTAACAACTTTTTGATAGCATTTTTAGTTTTTGGGCTATGCGCTTTTAAAGCTTGGGGTGCCTCTGCGCCTTTTCCGCTCTTGGCGCAGAGGTATGCTTTGTTTAAAGGCGCATATATCCAGAACCAAAACAACCATTCAGTTTTTGTGAATTACAAAAAAGTAAAGTATAAAATTTTACACACGATGTTACTTTACAACTTTTAGATAACTATTTTTGTTCTTAAGGTATGCGCCTTTAAATATAGGGCGCCT</canonical>
            <polymorphic>AAAAACCCAGAAAAAGGGAAACAAATTTAAGCACCTGTCTCCTCCGTGTGTCGAATGCATAAGCTCCGGTTTCCATTTTTTTTTGGGATTTCCAGAAAAAAATTGTTACCTACAAAGACAAAAAAAAACGGAGAGATTGATTGATGATACGTTTTTTTGTTTGTTTGTCACCCTCGTATTACTCCAAAAACGGGGAAAAAACACACTGAATGGATAATAGTGGGGAAAAAATAGAAAAGATAGAGAACAAATTTTCTGGAAGGGAGAGAGAAAAAAGAAAATAGAGAGACTTTGAGAAAAATACAACAACAAGGAGTAGTAGAATAATGCGATTTTGTAGATTATAAAAATGGCAAAAATAGAACAAAAGAACATTTCTTGGTCGTTTACAAATTGTTGATAGCTATTTTAGCTCTGAGGTATGCACCTTTAAAGTTTAACAGACTTTGAAAGGTATGGTTTTTTGAAATGGCTATATCTCAAGAATAAAAAATGCTATYACAAATTTGCTAACTACAAAAATGTAGAGCATAAAATTTTACACATTTTGTTAATTAAAAACTTTTTGATATATGTTTTAGTTTTCTAGCTATACGCCTTTAAAGGCCGCGTGTCTCTGCGCCCTCTCTCTCACTTGGCGCAGAGGTATGCCGTCTTTAAAGACGCATATCTCTAAAGGCAGAAAATCAATCTAACTTTTGTAAAATATCGAAATGTAGAGAATCAAATTCTGCACATTTTATCAGTTAACAACTTTTTGATAGCATTTTTAGTTTTTGGGCTATGCGCTTTTAAAGCTTGGGGTGCCTCTGCGCCTTTTCCGCTCTTGGCGCAGAGGTATGCTTTGTTTAAAGGCGCATATATCCAGAACCAAAACAACCATTCAGTTTTTGTGAATTACAAAAAAGTAAAGTATAAAATTTTACACACGATGTTACTTTACAACTTTTAGATAACTATTTTTGTTCTTAAGGTATGCGCCTTTAAATATAGGGCGCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>204 120 102 89 75 71 71 70 42 33 33 32 20 17 15 2 2 2</canonical_bands>
                <polymorphic_bands>204 120 117 102 89 71 71 70 33 33 32 20 17 15 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAAAAATACAACAACAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTATTCATCTTGTTCATCCT</pcr_primer_p2>
		<pcr_amplicon_size>1000</pcr_amplicon_size>
		<canonical_amplicon>GAGAAAAATACAACAACAAGGAGTAGTAGAATAATGCGATTTTGTAGATTATAAAAATGGCAAAAATAGAACAAAAGAACATTTCTTGGTCGTTTACAAATTGTTGATAGCTATTTTAGCTCTGAGGTATGCACCTTTAAAGTTTAACAGACTTTGAAAGGTATGGTTTTTTGAAATGGCTATATCTCAAGAATAAAAAATGCTATCACAAATTTGCTAACTACAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAGAAAAATACAACAACAAGGAGTAGTAGAATAATGCGATTTTGTAGATTATAAAAATGGCAAAAATAGAACAAAAGAACATTTCTTGGTCGTTTACAAATTGTTGATAGCTATTTTAGCTCTGAGGTATGCACCTTTAAAGTTTAACAGACTTTGAAAGGTATGGTTTTTTGAAATGGCTATATCTCAAGAATAAAAAATGCTATYACAAATTTGCTAACTACAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23358</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>106151</contig_pos>
        <strand></strand>
        <context>ctakyacaaa[T/A]ttgytaactw</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATGGTTTTTTGAAATGGCTATATCTCAAGAATAAAAAATGCTATCACAAA</left_flank>
        <right_flank>TTGCTAACTACAAAAATGTAGAGCATAAAATTTTACACATTTTGTTAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGAAAAAGGGAAACAAATTTAAGCACCTGTCTCCTCCGTGTGTCGAATGCATAAGCTCCGGTTTCCATTTTTTTTTGGGATTTCCAGAAAAAAATTGTTACCTACAAAGACAAAAAAAAACGGAGAGATTGATTGATGATACGTTTTTTTGTTTGTTTGTCACCCTCGTATTACTCCAAAAACGGGGAAAAAACACACTGAATGGATAATAGTGGGGAAAAAATAGAAAAGATAGAGAACAAATTTTCTGGAAGGGAGAGAGAAAAAAGAAAATAGAGAGACTTTGAGAAAAATACAACAACAAGGAGTAGTAGAATAATGCGATTTTGTAGATTATAAAAATGGCAAAAATAGAACAAAAGAACATTTCTTGGTCGTTTACAAATTGTTGATAGCTATTTTAGCTCTGAGGTATGCACCTTTAAAGTTTAACAGACTTTGAAAGGTATGGTTTTTTGAAATGGCTATATCTCAAGAATAAAAAATGCTATCACAAATTTGCTAACTACAAAAATGTAGAGCATAAAATTTTACACATTTTGTTAATTAAAAACTTTTTGATATATGTTTTAGTTTTCTAGCTATACGCCTTTAAAGGCCGCGTGTCTCTGCGCCCTCTCTCTCACTTGGCGCAGAGGTATGCCGTCTTTAAAGACGCATATCTCTAAAGGCAGAAAATCAATCTAACTTTTGTAAAATATCGAAATGTAGAGAATCAAATTCTGCACATTTTATCAGTTAACAACTTTTTGATAGCATTTTTAGTTTTTGGGCTATGCGCTTTTAAAGCTTGGGGTGCCTCTGCGCCTTTTCCGCTCTTGGCGCAGAGGTATGCTTTGTTTAAAGGCGCATATATCCAGAACCAAAACAACCATTCAGTTTTTGTGAATTACAAAAAAGTAAAGTATAAAATTTTACACACGATGTTACTTTACAACTTTTAGATAACTATTTTTGTTCTTAAGGTATGCGCCTTTAAATATAGGGCGCCTCTGCGC</canonical>
            <polymorphic>CCAGAAAAAGGGAAACAAATTTAAGCACCTGTCTCCTCCGTGTGTCGAATGCATAAGCTCCGGTTTCCATTTTTTTTTGGGATTTCCAGAAAAAAATTGTTACCTACAAAGACAAAAAAAAACGGAGAGATTGATTGATGATACGTTTTTTTGTTTGTTTGTCACCCTCGTATTACTCCAAAAACGGGGAAAAAACACACTGAATGGATAATAGTGGGGAAAAAATAGAAAAGATAGAGAACAAATTTTCTGGAAGGGAGAGAGAAAAAAGAAAATAGAGAGACTTTGAGAAAAATACAACAACAAGGAGTAGTAGAATAATGCGATTTTGTAGATTATAAAAATGGCAAAAATAGAACAAAAGAACATTTCTTGGTCGTTTACAAATTGTTGATAGCTATTTTAGCTCTGAGGTATGCACCTTTAAAGTTTAACAGACTTTGAAAGGTATGGTTTTTTGAAATGGCTATATCTCAAGAATAAAAAATGCTATCACAAAWTTGCTAACTACAAAAATGTAGAGCATAAAATTTTACACATTTTGTTAATTAAAAACTTTTTGATATATGTTTTAGTTTTCTAGCTATACGCCTTTAAAGGCCGCGTGTCTCTGCGCCCTCTCTCTCACTTGGCGCAGAGGTATGCCGTCTTTAAAGACGCATATCTCTAAAGGCAGAAAATCAATCTAACTTTTGTAAAATATCGAAATGTAGAGAATCAAATTCTGCACATTTTATCAGTTAACAACTTTTTGATAGCATTTTTAGTTTTTGGGCTATGCGCTTTTAAAGCTTGGGGTGCCTCTGCGCCTTTTCCGCTCTTGGCGCAGAGGTATGCTTTGTTTAAAGGCGCATATATCCAGAACCAAAACAACCATTCAGTTTTTGTGAATTACAAAAAAGTAAAGTATAAAATTTTACACACGATGTTACTTTACAACTTTTAGATAACTATTTTTGTTCTTAAGGTATGCGCCTTTAAATATAGGGCGCCTCTGCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>254 226 192 192 88 31 17</canonical_bands>
                <polymorphic_bands>285 226 192 192 88 17</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>174 169 149 142 112 88 77 31 23 18 17</canonical_bands>
                <polymorphic_bands>174 169 149 143 142 88 77 23 18 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAAAAATACAACAACAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTATTCATCTTGTTCATCCT</pcr_primer_p2>
		<pcr_amplicon_size>1000</pcr_amplicon_size>
		<canonical_amplicon>GAGAAAAATACAACAACAAGGAGTAGTAGAATAATGCGATTTTGTAGATTATAAAAATGGCAAAAATAGAACAAAAGAACATTTCTTGGTCGTTTACAAATTGTTGATAGCTATTTTAGCTCTGAGGTATGCACCTTTAAAGTTTAACAGACTTTGAAAGGTATGGTTTTTTGAAATGGCTATATCTCAAGAATAAAAAATGCTATCACAAATTTGCTAACTACAAAAATGTAGA</canonical_amplicon>
		<polymorphic_amplicon>GAGAAAAATACAACAACAAGGAGTAGTAGAATAATGCGATTTTGTAGATTATAAAAATGGCAAAAATAGAACAAAAGAACATTTCTTGGTCGTTTACAAATTGTTGATAGCTATTTTAGCTCTGAGGTATGCACCTTTAAAGTTTAACAGACTTTGAAAGGTATGGTTTTTTGAAATGGCTATATCTCAAGAATAAAAAATGCTATCACAAAWTTGCTAACTACAAAAATGTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23359</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>106155</contig_pos>
        <strand></strand>
        <context>yacaaawttg[C/T]taactwcaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTGAAATGGCTATATCTCAAGAATAAAAAATGCTATCACAAATTTG</left_flank>
        <right_flank>TAACTACAAAAATGTAGAGCATAAAATTTTACACATTTTGTTAATTAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAGGGAAACAAATTTAAGCACCTGTCTCCTCCGTGTGTCGAATGCATAAGCTCCGGTTTCCATTTTTTTTTGGGATTTCCAGAAAAAAATTGTTACCTACAAAGACAAAAAAAAACGGAGAGATTGATTGATGATACGTTTTTTTGTTTGTTTGTCACCCTCGTATTACTCCAAAAACGGGGAAAAAACACACTGAATGGATAATAGTGGGGAAAAAATAGAAAAGATAGAGAACAAATTTTCTGGAAGGGAGAGAGAAAAAAGAAAATAGAGAGACTTTGAGAAAAATACAACAACAAGGAGTAGTAGAATAATGCGATTTTGTAGATTATAAAAATGGCAAAAATAGAACAAAAGAACATTTCTTGGTCGTTTACAAATTGTTGATAGCTATTTTAGCTCTGAGGTATGCACCTTTAAAGTTTAACAGACTTTGAAAGGTATGGTTTTTTGAAATGGCTATATCTCAAGAATAAAAAATGCTATCACAAATTTGCTAACTACAAAAATGTAGAGCATAAAATTTTACACATTTTGTTAATTAAAAACTTTTTGATATATGTTTTAGTTTTCTAGCTATACGCCTTTAAAGGCCGCGTGTCTCTGCGCCCTCTCTCTCACTTGGCGCAGAGGTATGCCGTCTTTAAAGACGCATATCTCTAAAGGCAGAAAATCAATCTAACTTTTGTAAAATATCGAAATGTAGAGAATCAAATTCTGCACATTTTATCAGTTAACAACTTTTTGATAGCATTTTTAGTTTTTGGGCTATGCGCTTTTAAAGCTTGGGGTGCCTCTGCGCCTTTTCCGCTCTTGGCGCAGAGGTATGCTTTGTTTAAAGGCGCATATATCCAGAACCAAAACAACCATTCAGTTTTTGTGAATTACAAAAAAGTAAAGTATAAAATTTTACACACGATGTTACTTTACAACTTTTAGATAACTATTTTTGTTCTTAAGGTATGCGCCTTTAAATATAGGGCGCCTCTGCGCCAAG</canonical>
            <polymorphic>AAAAAGGGAAACAAATTTAAGCACCTGTCTCCTCCGTGTGTCGAATGCATAAGCTCCGGTTTCCATTTTTTTTTGGGATTTCCAGAAAAAAATTGTTACCTACAAAGACAAAAAAAAACGGAGAGATTGATTGATGATACGTTTTTTTGTTTGTTTGTCACCCTCGTATTACTCCAAAAACGGGGAAAAAACACACTGAATGGATAATAGTGGGGAAAAAATAGAAAAGATAGAGAACAAATTTTCTGGAAGGGAGAGAGAAAAAAGAAAATAGAGAGACTTTGAGAAAAATACAACAACAAGGAGTAGTAGAATAATGCGATTTTGTAGATTATAAAAATGGCAAAAATAGAACAAAAGAACATTTCTTGGTCGTTTACAAATTGTTGATAGCTATTTTAGCTCTGAGGTATGCACCTTTAAAGTTTAACAGACTTTGAAAGGTATGGTTTTTTGAAATGGCTATATCTCAAGAATAAAAAATGCTATCACAAATTTGYTAACTACAAAAATGTAGAGCATAAAATTTTACACATTTTGTTAATTAAAAACTTTTTGATATATGTTTTAGTTTTCTAGCTATACGCCTTTAAAGGCCGCGTGTCTCTGCGCCCTCTCTCTCACTTGGCGCAGAGGTATGCCGTCTTTAAAGACGCATATCTCTAAAGGCAGAAAATCAATCTAACTTTTGTAAAATATCGAAATGTAGAGAATCAAATTCTGCACATTTTATCAGTTAACAACTTTTTGATAGCATTTTTAGTTTTTGGGCTATGCGCTTTTAAAGCTTGGGGTGCCTCTGCGCCTTTTCCGCTCTTGGCGCAGAGGTATGCTTTGTTTAAAGGCGCATATATCCAGAACCAAAACAACCATTCAGTTTTTGTGAATTACAAAAAAGTAAAGTATAAAATTTTACACACGATGTTACTTTACAACTTTTAGATAACTATTTTTGTTCTTAAGGTATGCGCCTTTAAATATAGGGCGCCTCTGCGCCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAAAATACAACAACAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTATTCATCTTGTTCATCCT</pcr_primer_p2>
		<pcr_amplicon_size>1000</pcr_amplicon_size>
		<canonical_amplicon>GAGAAAAATACAACAACAAGGAGTAGTAGAATAATGCGATTTTGTAGATTATAAAAATGGCAAAAATAGAACAAAAGAACATTTCTTGGTCGTTTACAAATTGTTGATAGCTATTTTAGCTCTGAGGTATGCACCTTTAAAGTTTAACAGACTTTGAAAGGTATGGTTTTTTGAAATGGCTATATCTCAAGAATAAAAAATGCTATCACAAATTTGCTAACTACAAAAATGTAGAGCAT</canonical_amplicon>
		<polymorphic_amplicon>GAGAAAAATACAACAACAAGGAGTAGTAGAATAATGCGATTTTGTAGATTATAAAAATGGCAAAAATAGAACAAAAGAACATTTCTTGGTCGTTTACAAATTGTTGATAGCTATTTTAGCTCTGAGGTATGCACCTTTAAAGTTTAACAGACTTTGAAAGGTATGGTTTTTTGAAATGGCTATATCTCAAGAATAAAAAATGCTATCACAAATTTGYTAACTACAAAAATGTAGAGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23360</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>106161</contig_pos>
        <strand></strand>
        <context>wttgytaact[A/T]caaaaatgta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAATGGCTATATCTCAAGAATAAAAAATGCTATCACAAATTTGCTAACT</left_flank>
        <right_flank>CAAAAATGTAGAGCATAAAATTTTACACATTTTGTTAATTAAAAACTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAACAAATTTAAGCACCTGTCTCCTCCGTGTGTCGAATGCATAAGCTCCGGTTTCCATTTTTTTTTGGGATTTCCAGAAAAAAATTGTTACCTACAAAGACAAAAAAAAACGGAGAGATTGATTGATGATACGTTTTTTTGTTTGTTTGTCACCCTCGTATTACTCCAAAAACGGGGAAAAAACACACTGAATGGATAATAGTGGGGAAAAAATAGAAAAGATAGAGAACAAATTTTCTGGAAGGGAGAGAGAAAAAAGAAAATAGAGAGACTTTGAGAAAAATACAACAACAAGGAGTAGTAGAATAATGCGATTTTGTAGATTATAAAAATGGCAAAAATAGAACAAAAGAACATTTCTTGGTCGTTTACAAATTGTTGATAGCTATTTTAGCTCTGAGGTATGCACCTTTAAAGTTTAACAGACTTTGAAAGGTATGGTTTTTTGAAATGGCTATATCTCAAGAATAAAAAATGCTATCACAAATTTGCTAACTACAAAAATGTAGAGCATAAAATTTTACACATTTTGTTAATTAAAAACTTTTTGATATATGTTTTAGTTTTCTAGCTATACGCCTTTAAAGGCCGCGTGTCTCTGCGCCCTCTCTCTCACTTGGCGCAGAGGTATGCCGTCTTTAAAGACGCATATCTCTAAAGGCAGAAAATCAATCTAACTTTTGTAAAATATCGAAATGTAGAGAATCAAATTCTGCACATTTTATCAGTTAACAACTTTTTGATAGCATTTTTAGTTTTTGGGCTATGCGCTTTTAAAGCTTGGGGTGCCTCTGCGCCTTTTCCGCTCTTGGCGCAGAGGTATGCTTTGTTTAAAGGCGCATATATCCAGAACCAAAACAACCATTCAGTTTTTGTGAATTACAAAAAAGTAAAGTATAAAATTTTACACACGATGTTACTTTACAACTTTTAGATAACTATTTTTGTTCTTAAGGTATGCGCCTTTAAATATAGGGCGCCTCTGCGCCAAGTGAGAG</canonical>
            <polymorphic>GGAAACAAATTTAAGCACCTGTCTCCTCCGTGTGTCGAATGCATAAGCTCCGGTTTCCATTTTTTTTTGGGATTTCCAGAAAAAAATTGTTACCTACAAAGACAAAAAAAAACGGAGAGATTGATTGATGATACGTTTTTTTGTTTGTTTGTCACCCTCGTATTACTCCAAAAACGGGGAAAAAACACACTGAATGGATAATAGTGGGGAAAAAATAGAAAAGATAGAGAACAAATTTTCTGGAAGGGAGAGAGAAAAAAGAAAATAGAGAGACTTTGAGAAAAATACAACAACAAGGAGTAGTAGAATAATGCGATTTTGTAGATTATAAAAATGGCAAAAATAGAACAAAAGAACATTTCTTGGTCGTTTACAAATTGTTGATAGCTATTTTAGCTCTGAGGTATGCACCTTTAAAGTTTAACAGACTTTGAAAGGTATGGTTTTTTGAAATGGCTATATCTCAAGAATAAAAAATGCTATCACAAATTTGCTAACTWCAAAAATGTAGAGCATAAAATTTTACACATTTTGTTAATTAAAAACTTTTTGATATATGTTTTAGTTTTCTAGCTATACGCCTTTAAAGGCCGCGTGTCTCTGCGCCCTCTCTCTCACTTGGCGCAGAGGTATGCCGTCTTTAAAGACGCATATCTCTAAAGGCAGAAAATCAATCTAACTTTTGTAAAATATCGAAATGTAGAGAATCAAATTCTGCACATTTTATCAGTTAACAACTTTTTGATAGCATTTTTAGTTTTTGGGCTATGCGCTTTTAAAGCTTGGGGTGCCTCTGCGCCTTTTCCGCTCTTGGCGCAGAGGTATGCTTTGTTTAAAGGCGCATATATCCAGAACCAAAACAACCATTCAGTTTTTGTGAATTACAAAAAAGTAAAGTATAAAATTTTACACACGATGTTACTTTACAACTTTTAGATAACTATTTTTGTTCTTAAGGTATGCGCCTTTAAATATAGGGCGCCTCTGCGCCAAGTGAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAAAATACAACAACAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTATTCATCTTGTTCATCCT</pcr_primer_p2>
		<pcr_amplicon_size>1000</pcr_amplicon_size>
		<canonical_amplicon>GAGAAAAATACAACAACAAGGAGTAGTAGAATAATGCGATTTTGTAGATTATAAAAATGGCAAAAATAGAACAAAAGAACATTTCTTGGTCGTTTACAAATTGTTGATAGCTATTTTAGCTCTGAGGTATGCACCTTTAAAGTTTAACAGACTTTGAAAGGTATGGTTTTTTGAAATGGCTATATCTCAAGAATAAAAAATGCTATCACAAATTTGCTAACTACAAAAATGTAGAGCATAAAATT</canonical_amplicon>
		<polymorphic_amplicon>GAGAAAAATACAACAACAAGGAGTAGTAGAATAATGCGATTTTGTAGATTATAAAAATGGCAAAAATAGAACAAAAGAACATTTCTTGGTCGTTTACAAATTGTTGATAGCTATTTTAGCTCTGAGGTATGCACCTTTAAAGTTTAACAGACTTTGAAAGGTATGGTTTTTTGAAATGGCTATATCTCAAGAATAAAAAATGCTATCACAAATTTGCTAACTWCAAAAATGTAGAGCATAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23361</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>106231</contig_pos>
        <strand></strand>
        <context>ttttagtttt[C/T]tagctatacg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTACACATTTTGTTAATTAAAAACTTTTTGATATATGTTTTAGTTTT</left_flank>
        <right_flank>TAGCTATACGCCTTTAAAGGCCGCGTGTCTCTGCGCCCTCTCTCTCACTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTCCAGAAAAAAATTGTTACCTACAAAGACAAAAAAAAACGGAGAGATTGATTGATGATACGTTTTTTTGTTTGTTTGTCACCCTCGTATTACTCCAAAAACGGGGAAAAAACACACTGAATGGATAATAGTGGGGAAAAAATAGAAAAGATAGAGAACAAATTTTCTGGAAGGGAGAGAGAAAAAAGAAAATAGAGAGACTTTGAGAAAAATACAACAACAAGGAGTAGTAGAATAATGCGATTTTGTAGATTATAAAAATGGCAAAAATAGAACAAAAGAACATTTCTTGGTCGTTTACAAATTGTTGATAGCTATTTTAGCTCTGAGGTATGCACCTTTAAAGTTTAACAGACTTTGAAAGGTATGGTTTTTTGAAATGGCTATATCTCAAGAATAAAAAATGCTATCACAAATTTGCTAACTACAAAAATGTAGAGCATAAAATTTTACACATTTTGTTAATTAAAAACTTTTTGATATATGTTTTAGTTTTCTAGCTATACGCCTTTAAAGGCCGCGTGTCTCTGCGCCCTCTCTCTCACTTGGCGCAGAGGTATGCCGTCTTTAAAGACGCATATCTCTAAAGGCAGAAAATCAATCTAACTTTTGTAAAATATCGAAATGTAGAGAATCAAATTCTGCACATTTTATCAGTTAACAACTTTTTGATAGCATTTTTAGTTTTTGGGCTATGCGCTTTTAAAGCTTGGGGTGCCTCTGCGCCTTTTCCGCTCTTGGCGCAGAGGTATGCTTTGTTTAAAGGCGCATATATCCAGAACCAAAACAACCATTCAGTTTTTGTGAATTACAAAAAAGTAAAGTATAAAATTTTACACACGATGTTACTTTACAACTTTTAGATAACTATTTTTGTTCTTAAGGTATGCGCCTTTAAATATAGGGCGCCTCTGCGCCAAGTGAGAGGGAGGACGCAGGGCGACGCTTTCTTTAAAGGCGCATATCTTAAAAACCAAAAACGCTATTTAGAAATTTT</canonical>
            <polymorphic>GATTTCCAGAAAAAAATTGTTACCTACAAAGACAAAAAAAAACGGAGAGATTGATTGATGATACGTTTTTTTGTTTGTTTGTCACCCTCGTATTACTCCAAAAACGGGGAAAAAACACACTGAATGGATAATAGTGGGGAAAAAATAGAAAAGATAGAGAACAAATTTTCTGGAAGGGAGAGAGAAAAAAGAAAATAGAGAGACTTTGAGAAAAATACAACAACAAGGAGTAGTAGAATAATGCGATTTTGTAGATTATAAAAATGGCAAAAATAGAACAAAAGAACATTTCTTGGTCGTTTACAAATTGTTGATAGCTATTTTAGCTCTGAGGTATGCACCTTTAAAGTTTAACAGACTTTGAAAGGTATGGTTTTTTGAAATGGCTATATCTCAAGAATAAAAAATGCTATCACAAATTTGCTAACTACAAAAATGTAGAGCATAAAATTTTACACATTTTGTTAATTAAAAACTTTTTGATATATGTTTTAGTTTTYTAGCTATACGCCTTTAAAGGCCGCGTGTCTCTGCGCCCTCTCTCTCACTTGGCGCAGAGGTATGCCGTCTTTAAAGACGCATATCTCTAAAGGCAGAAAATCAATCTAACTTTTGTAAAATATCGAAATGTAGAGAATCAAATTCTGCACATTTTATCAGTTAACAACTTTTTGATAGCATTTTTAGTTTTTGGGCTATGCGCTTTTAAAGCTTGGGGTGCCTCTGCGCCTTTTCCGCTCTTGGCGCAGAGGTATGCTTTGTTTAAAGGCGCATATATCCAGAACCAAAACAACCATTCAGTTTTTGTGAATTACAAAAAAGTAAAGTATAAAATTTTACACACGATGTTACTTTACAACTTTTAGATAACTATTTTTGTTCTTAAGGTATGCGCCTTTAAATATAGGGCGCCTCTGCGCCAAGTGAGAGGGAGGACGCAGGGCGACGCTTTCTTTAAAGGCGCATATCTTAAAAACCAAAAACGCTATTTAGAAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAAAAATACAACAACAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTATTCATCTTGTTCATCCT</pcr_primer_p2>
		<pcr_amplicon_size>1000</pcr_amplicon_size>
		<canonical_amplicon>GAGAAAAATACAACAACAAGGAGTAGTAGAATAATGCGATTTTGTAGATTATAAAAATGGCAAAAATAGAACAAAAGAACATTTCTTGGTCGTTTACAAATTGTTGATAGCTATTTTAGCTCTGAGGTATGCACCTTTAAAGTTTAACAGACTTTGAAAGGTATGGTTTTTTGAAATGGCTATATCTCAAGAATAAAAAATGCTATCACAAATTTGCTAACTACAAAAATGTAGAGCATAAAATTTTACACATTTTGTTAATTAAAAACTTTTTGATATATGTTTTAGTTTTCTAGCTATACGCCTTTAAAGGCC</canonical_amplicon>
		<polymorphic_amplicon>GAGAAAAATACAACAACAAGGAGTAGTAGAATAATGCGATTTTGTAGATTATAAAAATGGCAAAAATAGAACAAAAGAACATTTCTTGGTCGTTTACAAATTGTTGATAGCTATTTTAGCTCTGAGGTATGCACCTTTAAAGTTTAACAGACTTTGAAAGGTATGGTTTTTTGAAATGGCTATATCTCAAGAATAAAAAATGCTATCACAAATTTGCTAACTACAAAAATGTAGAGCATAAAATTTTACACATTTTGTTAATTAAAAACTTTTTGATATATGTTTTAGTTTTYTAGCTATACGCCTTTAAAGGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23362</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>109223</contig_pos>
        <strand></strand>
        <context>GTGTGCATGT[A/G]gaaaaaaaag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGGGAAAAGGCAAAAAAAGAAGGGACCACAAAGAGTTTTGTGTGCATGT</left_flank>
        <right_flank>GAAAAAAAAGTGAAAGTGGAAAAAAGAAGAAAAAAAGAAGGAGAAGAAGA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGATTTTCTCACTTAGTCGATCATCTTAATGAGCAGACTCCCATCTATCTCCTCCCCCATACTCATCAATACGTCAGAAGAGAATGGGGGTCAGATTTCATCAAAATTCGGGTCCTCTTAGAATATTAAACGATCTTAAAAGAAGAAAAAATAAGAAAAATTCAGAAGTTGCGTAGGGGGGAATCGAACTAAGGAGTTCAAAATCATGGGTGGCGCCTTGAACCACTAGGCCAAAATCGCACCTTGAACACCGATGAATGAAAGGCATATAGGAACGGGTGGGTTTCCAAGATGCGCGAGGGGAGCTTTGGGGAAAATTAGGAAAATTAGAAATCAGAGAAATTGAGGCAAAAATGAGCAATGTCCCCAAAAACCTAAAAAGTGCTCAAAAATCCACTGGATTAGTGCGTGTGAAAGGGGGAGGGAAAAAGTGTAGGAAGGTGGTGCCTGGGAAAAGGCAAAAAAAGAAGGGACCACAAAGAGTTTTGTGTGCATGTAGAAAAAAAAGTGAAAGTGGAAAAAAGAAGAAAAAAAGAAGGAGAAGAAGAGGGGTAAAGTTCGAGTTGCCAAGTGGCAGGAGAGCTCTCCAGGAGCCAGAAGAGCACAATAAAAGCCCCCCGTCTTCCTGAAGAGCCCGAGGAGCAGGAGAGAGGGATGGAGAGACTCTTTCCTCTTCTTCTTCTTCTTCACACCTTATCTTCTTTTCTGCCTCTCTTCACCTGTCTTCTTCTTCTTCTTCTTTCATATGTTTTGCCACCCGCTTCTTCTTCTTCTTCTTCTTCTTCTTATATCCCTTCTTCTTCCTCCCATCATCCCGTTATCCGTTCGTCTTGAGAGGAAGAAGAAGGTAGGGAAAAGAGGAGACAAGCAAGCACTATTAAATTGATGAATATATATCCAACTTGTAGGGTTTCTTTCCATTCCAAATCCTTATTTCCACCCAGGTCGTTCTTCACCACAGTCCGCACTCTACTCATTGAAGCGCCCTCGGCTCTCGA</canonical>
            <polymorphic>ATGGATTTTCTCACTTAGTCGATCATCTTAATGAGCAGACTCCCATCTATCTCCTCCCCCATACTCATCAATACGTCAGAAGAGAATGGGGGTCAGATTTCATCAAAATTCGGGTCCTCTTAGAATATTAAACGATCTTAAAAGAAGAAAAAATAAGAAAAATTCAGAAGTTGCGTAGGGGGGAATCGAACTAAGGAGTTCAAAATCATGGGTGGCGCCTTGAACCACTAGGCCAAAATCGCACCTTGAACACCGATGAATGAAAGGCATATAGGAACGGGTGGGTTTCCAAGATGCGCGAGGGGAGCTTTGGGGAAAATTAGGAAAATTAGAAATCAGAGAAATTGAGGCAAAAATGAGCAATGTCCCCAAAAACCTAAAAAGTGCTCAAAAATCCACTGGATTAGTGCGTGTGAAAGGGGGAGGGAAAAAGTGTAGGAAGGTGGTGCCTGGGAAAAGGCAAAAAAAGAAGGGACCACAAAGAGTTTTGTGTGCATGTRGAAAAAAAAGTGAAAGTGGAAAAAAGAAGAAAAAAAGAAGGAGAAGAAGAGGGGTAAAGTTCGAGTTGCCAAGTGGCAGGAGAGCTCTCCAGGAGCCAGAAGAGCACAATAAAAGCCCCCCGTCTTCCTGAAGAGCCCGAGGAGCAGGAGAGAGGGATGGAGAGACTCTTTCCTCTTCTTCTTCTTCTTCACACCTTATCTTCTTTTCTGCCTCTCTTCACCTGTCTTCTTCTTCTTCTTCTTTCATATGTTTTGCCACCCGCTTCTTCTTCTTCTTCTTCTTCTTCTTATATCCCTTCTTCTTCCTCCCATCATCCCGTTATCCGTTCGTCTTGAGAGGAAGAAGAAGGTAGGGAAAAGAGGAGACAAGCAAGCACTATTAAATTGATGAATATATATCCAACTTGTAGGGTTTCTTTCCATTCCAAATCCTTATTTCCACCCAGGTCGTTCTTCACCACAGTCCGCACTCTACTCATTGAAGCGCCCTCGGCTCTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTAGAAATCAGAGAAATTGA</pcr_primer_p1>
		<pcr_primer_p2>CTTGGCAACTCGAACTTTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTAGAAATCAGAGAAATTGAGGCAAAAATGAGCAATGTCCCCAAAAACCTAAAAAGTGCTCAAAAATCCACTGGATTAGTGCGTGTGAAAGGGGGAGGGAAAAAGTGTAGGAAGGTGGTGCCTGGGAAAAGGCAAAAAAAGAAGGGACCACAAAGAGTTTTGTGTGCATGTAGAAAAAAAAGTGAAAGTGGAAAAAAGAAGAAAAAAAGAAGGAGAAGAAGAGGGGTAAAGTTCGAGTTGCCAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTAGAAATCAGAGAAATTGAGGCAAAAATGAGCAATGTCCCCAAAAACCTAAAAAGTGCTCAAAAATCCACTGGATTAGTGCGTGTGAAAGGGGGAGGGAAAAAGTGTAGGAAGGTGGTGCCTGGGAAAAGGCAAAAAAAGAAGGGACCACAAAGAGTTTTGTGTGCATGTRGAAAAAAAAGTGAAAGTGGAAAAAAGAAGAAAAAAAGAAGGAGAAGAAGAGGGGTAAAGTTCGAGTTGCCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23363</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>109434</contig_pos>
        <strand></strand>
        <context>ttcttttctg[C/T]ctctcttcac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAGACTCTTTCCTCTTCTTCTTCTTCTTCACACCTTATCTTCTTTTCTG</left_flank>
        <right_flank>CTCTCTTCACCTGTCTTCTTCTTCTTCTTCTTTCATATGTTTTGCCACCC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGCGCCTTGAACCACTAGGCCAAAATCGCACCTTGAACACCGATGAATGAAAGGCATATAGGAACGGGTGGGTTTCCAAGATGCGCGAGGGGAGCTTTGGGGAAAATTAGGAAAATTAGAAATCAGAGAAATTGAGGCAAAAATGAGCAATGTCCCCAAAAACCTAAAAAGTGCTCAAAAATCCACTGGATTAGTGCGTGTGAAAGGGGGAGGGAAAAAGTGTAGGAAGGTGGTGCCTGGGAAAAGGCAAAAAAAGAAGGGACCACAAAGAGTTTTGTGTGCATGTAGAAAAAAAAGTGAAAGTGGAAAAAAGAAGAAAAAAAGAAGGAGAAGAAGAGGGGTAAAGTTCGAGTTGCCAAGTGGCAGGAGAGCTCTCCAGGAGCCAGAAGAGCACAATAAAAGCCCCCCGTCTTCCTGAAGAGCCCGAGGAGCAGGAGAGAGGGATGGAGAGACTCTTTCCTCTTCTTCTTCTTCTTCACACCTTATCTTCTTTTCTGCCTCTCTTCACCTGTCTTCTTCTTCTTCTTCTTTCATATGTTTTGCCACCCGCTTCTTCTTCTTCTTCTTCTTCTTCTTATATCCCTTCTTCTTCCTCCCATCATCCCGTTATCCGTTCGTCTTGAGAGGAAGAAGAAGGTAGGGAAAAGAGGAGACAAGCAAGCACTATTAAATTGATGAATATATATCCAACTTGTAGGGTTTCTTTCCATTCCAAATCCTTATTTCCACCCAGGTCGTTCTTCACCACAGTCCGCACTCTACTCATTGAAGCGCCCTCGGCTCTCGATCAGCCGCGCCTTCTTATCCCTTCCTATACGCCATGGTGCTCTTGGGTGTTCATGTGCACCTGTGGCGCAGGTGGATAGACGCGTGTCTACCAGTCTGCGCTTTTGGCGGTGGCGTGGGTTCCACTCCCCGACAGAGCCAGTTGCGTTTTGTGGAACCGAAATTAAAGGTTTGCACCCTAATTTCCGGTCCCAAGGATATGATAAATTTAG</canonical>
            <polymorphic>GTGGCGCCTTGAACCACTAGGCCAAAATCGCACCTTGAACACCGATGAATGAAAGGCATATAGGAACGGGTGGGTTTCCAAGATGCGCGAGGGGAGCTTTGGGGAAAATTAGGAAAATTAGAAATCAGAGAAATTGAGGCAAAAATGAGCAATGTCCCCAAAAACCTAAAAAGTGCTCAAAAATCCACTGGATTAGTGCGTGTGAAAGGGGGAGGGAAAAAGTGTAGGAAGGTGGTGCCTGGGAAAAGGCAAAAAAAGAAGGGACCACAAAGAGTTTTGTGTGCATGTAGAAAAAAAAGTGAAAGTGGAAAAAAGAAGAAAAAAAGAAGGAGAAGAAGAGGGGTAAAGTTCGAGTTGCCAAGTGGCAGGAGAGCTCTCCAGGAGCCAGAAGAGCACAATAAAAGCCCCCCGTCTTCCTGAAGAGCCCGAGGAGCAGGAGAGAGGGATGGAGAGACTCTTTCCTCTTCTTCTTCTTCTTCACACCTTATCTTCTTTTCTGYCTCTCTTCACCTGTCTTCTTCTTCTTCTTCTTTCATATGTTTTGCCACCCGCTTCTTCTTCTTCTTCTTCTTCTTCTTATATCCCTTCTTCTTCCTCCCATCATCCCGTTATCCGTTCGTCTTGAGAGGAAGAAGAAGGTAGGGAAAAGAGGAGACAAGCAAGCACTATTAAATTGATGAATATATATCCAACTTGTAGGGTTTCTTTCCATTCCAAATCCTTATTTCCACCCAGGTCGTTCTTCACCACAGTCCGCACTCTACTCATTGAAGCGCCCTCGGCTCTCGATCAGCCGCGCCTTCTTATCCCTTCCTATACGCCATGGTGCTCTTGGGTGTTCATGTGCACCTGTGGCGCAGGTGGATAGACGCGTGTCTACCAGTCTGCGCTTTTGGCGGTGGCGTGGGTTCCACTCCCCGACAGAGCCAGTTGCGTTTTGTGGAACCGAAATTAAAGGTTTGCACCCTAATTTCCGGTCCCAAGGATATGATAAATTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCCAGAAGAGCACAATAAA</pcr_primer_p1>
		<pcr_primer_p2>CTCTCAAGACGAACGGATAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGCCAGAAGAGCACAATAAAAGCCCCCCGTCTTCCTGAAGAGCCCGAGGAGCAGGAGAGAGGGATGGAGAGACTCTTTCCTCTTCTTCTTCTTCTTCACACCTTATCTTCTTTTCTGCCTCTCTTCACCTGTCTTCTTCTTCTTCTTCTTTCATATGTTTTGCCACCCGCTTCTTCTTCTTCTTCTTCTTCTTCTTATATCCCTTCTTCTTCCTCCCATCATCCCGTTATCCGTTCGTCTTGAGAG</canonical_amplicon>
		<polymorphic_amplicon>AGCCAGAAGAGCACAATAAAAGCCCCCCGTCTTCCTGAAGAGCCCGAGGAGCAGGAGAGAGGGATGGAGAGACTCTTTCCTCTTCTTCTTCTTCTTCACACCTTATCTTCTTTTCTGYCTCTCTTCACCTGTCTTCTTCTTCTTCTTCTTTCATATGTTTTGCCACCCGCTTCTTCTTCTTCTTCTTCTTCTTCTTATATCCCTTCTTCTTCCTCCCATCATCCCGTTATCCGTTCGTCTTGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23372</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>178722</contig_pos>
        <strand></strand>
        <context>TGGGATTTTT[T/A]GGGCTAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CATTATCAGAGTTGAAATTAGCTGATTTTAGGCTTAAATTTGGGATTTTT</left_flank>
        <right_flank>GGGCTAAAAATCGTCGTTTTTGCTGAGTCAAATTGTCAATTTCAAGAGGC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGATAACGACGGGCTTTCTGTTCGGGATACTCGTGGATGTTGAACTCGTCCCATGGATCGACATAGTTCGAACGGGCTCGCCGAGCCGCTCGTCGCCACGTTTCCATCAGTTGACGCACTCTGGAAATTAGGCGGAAATTCCAGATTTTTTGGGTCCAAATTTGCTAATTTTGGGCTTAAACTTGGTATTTTTAATGCTAGAAATCGCCATTTTCAGACTCGAAATTGTCCAATTTATGCTTAAATTTTTTTTTCGGGATTTTCGGGTCAAATTTGGCATTTTCAGGGTCGAAATTGGCTGATTTCAGGATTCAACTTCGTTGTTTTCTAAGGCTAAAAATCAGATTTTCAAACTTAAAATCGGCTAATTTAAGCCCTAAATTTGAGATTTCAAGACTAAAAACCGTCATTTTTGGCTAAAAGTCCGCATTTTAAACTGAAAAATCGACATTATCAGAGTTGAAATTAGCTGATTTTAGGCTTAAATTTGGGATTTTTTGGGCTAAAAATCGTCGTTTTTGCTGAGTCAAATTGTCAATTTCAAGAGGCAAATTCGACTTTTTCGGGCCAAAATTTCTCATTTTCAGACTCGAAATTAGCAATTTTCAGGCTTACAAATTCAGAATTTTGTTAATTTTTCGGCGAAAATTTTGGGAATTTAAAGCTCAAATTTGCGATTTTATAAGCTAGAGAATTGTCATTTTTAAGAGCGAAAATTCTAGATTTTTCAGGAAAAAATGACAAATTTTTTGGCTGAAATTTGGGATTTTTAGGGGATAAAAATCAGCATTTTCAAGTGAATATCGTCGTTTTTGGCCGTAAGGTGTAGTGTTTGCGGACTTTCGGCTCTACCGTAACCCGAAAAACCTGGAAATTGAGCTAGAAAGTTCTAGAAACGTCTGTCTAGACCCATTTTTCACGCTGACTCCGGATGTGATAGCCGTTTTTGTAATTTTCAGTAGTTATGTTAGGGATTTGGGATTTTTGAATTTTTTGGTT</canonical>
            <polymorphic>TCGATAACGACGGGCTTTCTGTTCGGGATACTCGTGGATGTTGAACTCGTCCCATGGATCGACATAGTTCGAACGGGCTCGCCGAGCCGCTCGTCGCCACGTTTCCATCAGTTGACGCACTCTGGAAATTAGGCGGAAATTCCAGATTTTTTGGGTCCAAATTTGCTAATTTTGGGCTTAAACTTGGTATTTTTAATGCTAGAAATCGCCATTTTCAGACTCGAAATTGTCCAATTTATGCTTAAATTTTTTTTTCGGGATTTTCGGGTCAAATTTGGCATTTTCAGGGTCGAAATTGGCTGATTTCAGGATTCAACTTCGTTGTTTTCTAAGGCTAAAAATCAGATTTTCAAACTTAAAATCGGCTAATTTAAGCCCTAAATTTGAGATTTCAAGACTAAAAACCGTCATTTTTGGCTAAAAGTCCGCATTTTAAACTGAAAAATCGACATTATCAGAGTTGAAATTAGCTGATTTTAGGCTTAAATTTGGGATTTTTWGGGCTAAAAATCGTCGTTTTTGCTGAGTCAAATTGTCAATTTCAAGAGGCAAATTCGACTTTTTCGGGCCAAAATTTCTCATTTTCAGACTCGAAATTAGCAATTTTCAGGCTTACAAATTCAGAATTTTGTTAATTTTTCGGCGAAAATTTTGGGAATTTAAAGCTCAAATTTGCGATTTTATAAGCTAGAGAATTGTCATTTTTAAGAGCGAAAATTCTAGATTTTTCAGGAAAAAATGACAAATTTTTTGGCTGAAATTTGGGATTTTTAGGGGATAAAAATCAGCATTTTCAAGTGAATATCGTCGTTTTTGGCCGTAAGGTGTAGTGTTTGCGGACTTTCGGCTCTACCGTAACCCGAAAAACCTGGAAATTGAGCTAGAAAGTTCTAGAAACGTCTGTCTAGACCCATTTTTCACGCTGACTCCGGATGTGATAGCCGTTTTTGTAATTTTCAGTAGTTATGTTAGGGATTTGGGATTTTTGAATTTTTTGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCGACATTATCAGAGTTGAAA</pcr_primer_p1>
		<pcr_primer_p2>CTCTAGCTTATAAAATCGCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCGACATTATCAGAGTTGAAATTAGCTGATTTTAGGCTTAAATTTGGGATTTTTTGGGCTAAAAATCGTCGTTTTTGCTGAGTCAAATTGTCAATTTCAAGAGGCAAATTCGACTTTTTCGGGCCAAAATTTCTCATTTTCAGACTCGAAATTAGCAATTTTCAGGCTTACAAATTCAGAATTTTGTTAATTTTTCGGCGAAAATTTTGGGAATTTAAAGCTCAAATTTGCGATTTTATAAGCTAGAG</canonical_amplicon>
		<polymorphic_amplicon>AATCGACATTATCAGAGTTGAAATTAGCTGATTTTAGGCTTAAATTTGGGATTTTTWGGGCTAAAAATCGTCGTTTTTGCTGAGTCAAATTGTCAATTTCAAGAGGCAAATTCGACTTTTTCGGGCCAAAATTTCTCATTTTCAGACTCGAAATTAGCAATTTTCAGGCTTACAAATTCAGAATTTTGTTAATTTTTCGGCGAAAATTTTGGGAATTTAAAGCTCAAATTTGCGATTTTATAAGCTAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23373</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>178778</contig_pos>
        <strand></strand>
        <context>GAGGCAAATT[C/T]GACTTTTTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATCGTCGTTTTTGCTGAGTCAAATTGTCAATTTCAAGAGGCAAATT</left_flank>
        <right_flank>GACTTTTTCGGGCCAAAATTTCTCATTTTCAGACTCGAAATTAGCAATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATCGACATAGTTCGAACGGGCTCGCCGAGCCGCTCGTCGCCACGTTTCCATCAGTTGACGCACTCTGGAAATTAGGCGGAAATTCCAGATTTTTTGGGTCCAAATTTGCTAATTTTGGGCTTAAACTTGGTATTTTTAATGCTAGAAATCGCCATTTTCAGACTCGAAATTGTCCAATTTATGCTTAAATTTTTTTTTCGGGATTTTCGGGTCAAATTTGGCATTTTCAGGGTCGAAATTGGCTGATTTCAGGATTCAACTTCGTTGTTTTCTAAGGCTAAAAATCAGATTTTCAAACTTAAAATCGGCTAATTTAAGCCCTAAATTTGAGATTTCAAGACTAAAAACCGTCATTTTTGGCTAAAAGTCCGCATTTTAAACTGAAAAATCGACATTATCAGAGTTGAAATTAGCTGATTTTAGGCTTAAATTTGGGATTTTTTGGGCTAAAAATCGTCGTTTTTGCTGAGTCAAATTGTCAATTTCAAGAGGCAAATTCGACTTTTTCGGGCCAAAATTTCTCATTTTCAGACTCGAAATTAGCAATTTTCAGGCTTACAAATTCAGAATTTTGTTAATTTTTCGGCGAAAATTTTGGGAATTTAAAGCTCAAATTTGCGATTTTATAAGCTAGAGAATTGTCATTTTTAAGAGCGAAAATTCTAGATTTTTCAGGAAAAAATGACAAATTTTTTGGCTGAAATTTGGGATTTTTAGGGGATAAAAATCAGCATTTTCAAGTGAATATCGTCGTTTTTGGCCGTAAGGTGTAGTGTTTGCGGACTTTCGGCTCTACCGTAACCCGAAAAACCTGGAAATTGAGCTAGAAAGTTCTAGAAACGTCTGTCTAGACCCATTTTTCACGCTGACTCCGGATGTGATAGCCGTTTTTGTAATTTTCAGTAGTTATGTTAGGGATTTGGGATTTTTGAATTTTTTGGTTTTAGAAAATTTTAAAAACTGAGCTTCAAATTTTTTTTCGACAATTTTCGTTATCAA</canonical>
            <polymorphic>GATCGACATAGTTCGAACGGGCTCGCCGAGCCGCTCGTCGCCACGTTTCCATCAGTTGACGCACTCTGGAAATTAGGCGGAAATTCCAGATTTTTTGGGTCCAAATTTGCTAATTTTGGGCTTAAACTTGGTATTTTTAATGCTAGAAATCGCCATTTTCAGACTCGAAATTGTCCAATTTATGCTTAAATTTTTTTTTCGGGATTTTCGGGTCAAATTTGGCATTTTCAGGGTCGAAATTGGCTGATTTCAGGATTCAACTTCGTTGTTTTCTAAGGCTAAAAATCAGATTTTCAAACTTAAAATCGGCTAATTTAAGCCCTAAATTTGAGATTTCAAGACTAAAAACCGTCATTTTTGGCTAAAAGTCCGCATTTTAAACTGAAAAATCGACATTATCAGAGTTGAAATTAGCTGATTTTAGGCTTAAATTTGGGATTTTTTGGGCTAAAAATCGTCGTTTTTGCTGAGTCAAATTGTCAATTTCAAGAGGCAAATTYGACTTTTTCGGGCCAAAATTTCTCATTTTCAGACTCGAAATTAGCAATTTTCAGGCTTACAAATTCAGAATTTTGTTAATTTTTCGGCGAAAATTTTGGGAATTTAAAGCTCAAATTTGCGATTTTATAAGCTAGAGAATTGTCATTTTTAAGAGCGAAAATTCTAGATTTTTCAGGAAAAAATGACAAATTTTTTGGCTGAAATTTGGGATTTTTAGGGGATAAAAATCAGCATTTTCAAGTGAATATCGTCGTTTTTGGCCGTAAGGTGTAGTGTTTGCGGACTTTCGGCTCTACCGTAACCCGAAAAACCTGGAAATTGAGCTAGAAAGTTCTAGAAACGTCTGTCTAGACCCATTTTTCACGCTGACTCCGGATGTGATAGCCGTTTTTGTAATTTTCAGTAGTTATGTTAGGGATTTGGGATTTTTGAATTTTTTGGTTTTAGAAAATTTTAAAAACTGAGCTTCAAATTTTTTTTCGACAATTTTCGTTATCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>230 109 105 85 81 66 46 45 29 29 27 23 22 21 21 18 14 13 9 7</canonical_bands>
                <polymorphic_bands>230 109 105 87 85 81 46 45 29 29 27 23 22 21 18 14 13 9 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>446 156 152 109 69 36 18 10 4</canonical_bands>
                <polymorphic_bands>446 156 152 145 69 18 10 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCGACATTATCAGAGTTGAAA</pcr_primer_p1>
		<pcr_primer_p2>CTCTAGCTTATAAAATCGCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCGACATTATCAGAGTTGAAATTAGCTGATTTTAGGCTTAAATTTGGGATTTTTTGGGCTAAAAATCGTCGTTTTTGCTGAGTCAAATTGTCAATTTCAAGAGGCAAATTCGACTTTTTCGGGCCAAAATTTCTCATTTTCAGACTCGAAATTAGCAATTTTCAGGCTTACAAATTCAGAATTTTGTTAATTTTTCGGCGAAAATTTTGGGAATTTAAAGCTCAAATTTGCGATTTTATAAGCTAGAG</canonical_amplicon>
		<polymorphic_amplicon>AATCGACATTATCAGAGTTGAAATTAGCTGATTTTAGGCTTAAATTTGGGATTTTTTGGGCTAAAAATCGTCGTTTTTGCTGAGTCAAATTGTCAATTTCAAGAGGCAAATTYGACTTTTTCGGGCCAAAATTTCTCATTTTCAGACTCGAAATTAGCAATTTTCAGGCTTACAAATTCAGAATTTTGTTAATTTTTCGGCGAAAATTTTGGGAATTTAAAGCTCAAATTTGCGATTTTATAAGCTAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23374</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>178793</contig_pos>
        <strand></strand>
        <context>TTTTCGGGCC[A/C]AAATTTCTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCTGAGTCAAATTGTCAATTTCAAGAGGCAAATTCGACTTTTTCGGGCC</left_flank>
        <right_flank>AAATTTCTCATTTTCAGACTCGAAATTAGCAATTTTCAGGCTTACAAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGGGCTCGCCGAGCCGCTCGTCGCCACGTTTCCATCAGTTGACGCACTCTGGAAATTAGGCGGAAATTCCAGATTTTTTGGGTCCAAATTTGCTAATTTTGGGCTTAAACTTGGTATTTTTAATGCTAGAAATCGCCATTTTCAGACTCGAAATTGTCCAATTTATGCTTAAATTTTTTTTTCGGGATTTTCGGGTCAAATTTGGCATTTTCAGGGTCGAAATTGGCTGATTTCAGGATTCAACTTCGTTGTTTTCTAAGGCTAAAAATCAGATTTTCAAACTTAAAATCGGCTAATTTAAGCCCTAAATTTGAGATTTCAAGACTAAAAACCGTCATTTTTGGCTAAAAGTCCGCATTTTAAACTGAAAAATCGACATTATCAGAGTTGAAATTAGCTGATTTTAGGCTTAAATTTGGGATTTTTTGGGCTAAAAATCGTCGTTTTTGCTGAGTCAAATTGTCAATTTCAAGAGGCAAATTCGACTTTTTCGGGCCAAAATTTCTCATTTTCAGACTCGAAATTAGCAATTTTCAGGCTTACAAATTCAGAATTTTGTTAATTTTTCGGCGAAAATTTTGGGAATTTAAAGCTCAAATTTGCGATTTTATAAGCTAGAGAATTGTCATTTTTAAGAGCGAAAATTCTAGATTTTTCAGGAAAAAATGACAAATTTTTTGGCTGAAATTTGGGATTTTTAGGGGATAAAAATCAGCATTTTCAAGTGAATATCGTCGTTTTTGGCCGTAAGGTGTAGTGTTTGCGGACTTTCGGCTCTACCGTAACCCGAAAAACCTGGAAATTGAGCTAGAAAGTTCTAGAAACGTCTGTCTAGACCCATTTTTCACGCTGACTCCGGATGTGATAGCCGTTTTTGTAATTTTCAGTAGTTATGTTAGGGATTTGGGATTTTTGAATTTTTTGGTTTTAGAAAATTTTAAAAACTGAGCTTCAAATTTTTTTTCGACAATTTTCGTTATCAAATTTGAATTCAGCGT</canonical>
            <polymorphic>AACGGGCTCGCCGAGCCGCTCGTCGCCACGTTTCCATCAGTTGACGCACTCTGGAAATTAGGCGGAAATTCCAGATTTTTTGGGTCCAAATTTGCTAATTTTGGGCTTAAACTTGGTATTTTTAATGCTAGAAATCGCCATTTTCAGACTCGAAATTGTCCAATTTATGCTTAAATTTTTTTTTCGGGATTTTCGGGTCAAATTTGGCATTTTCAGGGTCGAAATTGGCTGATTTCAGGATTCAACTTCGTTGTTTTCTAAGGCTAAAAATCAGATTTTCAAACTTAAAATCGGCTAATTTAAGCCCTAAATTTGAGATTTCAAGACTAAAAACCGTCATTTTTGGCTAAAAGTCCGCATTTTAAACTGAAAAATCGACATTATCAGAGTTGAAATTAGCTGATTTTAGGCTTAAATTTGGGATTTTTTGGGCTAAAAATCGTCGTTTTTGCTGAGTCAAATTGTCAATTTCAAGAGGCAAATTCGACTTTTTCGGGCCMAAATTTCTCATTTTCAGACTCGAAATTAGCAATTTTCAGGCTTACAAATTCAGAATTTTGTTAATTTTTCGGCGAAAATTTTGGGAATTTAAAGCTCAAATTTGCGATTTTATAAGCTAGAGAATTGTCATTTTTAAGAGCGAAAATTCTAGATTTTTCAGGAAAAAATGACAAATTTTTTGGCTGAAATTTGGGATTTTTAGGGGATAAAAATCAGCATTTTCAAGTGAATATCGTCGTTTTTGGCCGTAAGGTGTAGTGTTTGCGGACTTTCGGCTCTACCGTAACCCGAAAAACCTGGAAATTGAGCTAGAAAGTTCTAGAAACGTCTGTCTAGACCCATTTTTCACGCTGACTCCGGATGTGATAGCCGTTTTTGTAATTTTCAGTAGTTATGTTAGGGATTTGGGATTTTTGAATTTTTTGGTTTTAGAAAATTTTAAAAACTGAGCTTCAAATTTTTTTTCGACAATTTTCGTTATCAAATTTGAATTCAGCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCGACATTATCAGAGTTGAAA</pcr_primer_p1>
		<pcr_primer_p2>CTCTAGCTTATAAAATCGCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCGACATTATCAGAGTTGAAATTAGCTGATTTTAGGCTTAAATTTGGGATTTTTTGGGCTAAAAATCGTCGTTTTTGCTGAGTCAAATTGTCAATTTCAAGAGGCAAATTCGACTTTTTCGGGCCAAAATTTCTCATTTTCAGACTCGAAATTAGCAATTTTCAGGCTTACAAATTCAGAATTTTGTTAATTTTTCGGCGAAAATTTTGGGAATTTAAAGCTCAAATTTGCGATTTTATAAGCTAGAG</canonical_amplicon>
		<polymorphic_amplicon>AATCGACATTATCAGAGTTGAAATTAGCTGATTTTAGGCTTAAATTTGGGATTTTTTGGGCTAAAAATCGTCGTTTTTGCTGAGTCAAATTGTCAATTTCAAGAGGCAAATTCGACTTTTTCGGGCCMAAATTTCTCATTTTCAGACTCGAAATTAGCAATTTTCAGGCTTACAAATTCAGAATTTTGTTAATTTTTCGGCGAAAATTTTGGGAATTTAAAGCTCAAATTTGCGATTTTATAAGCTAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23375</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>178835</contig_pos>
        <strand></strand>
        <context>ATTTTCAGGC[T/A]TACAAATTYA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTCGGGCCAAAATTTCTCATTTTCAGACTCGAAATTAGCAATTTTCAGGC</left_flank>
        <right_flank>TACAAATTCAGAATTTTGTTAATTTTTCGGCGAAAATTTTGGGAATTTAA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACGCACTCTGGAAATTAGGCGGAAATTCCAGATTTTTTGGGTCCAAATTTGCTAATTTTGGGCTTAAACTTGGTATTTTTAATGCTAGAAATCGCCATTTTCAGACTCGAAATTGTCCAATTTATGCTTAAATTTTTTTTTCGGGATTTTCGGGTCAAATTTGGCATTTTCAGGGTCGAAATTGGCTGATTTCAGGATTCAACTTCGTTGTTTTCTAAGGCTAAAAATCAGATTTTCAAACTTAAAATCGGCTAATTTAAGCCCTAAATTTGAGATTTCAAGACTAAAAACCGTCATTTTTGGCTAAAAGTCCGCATTTTAAACTGAAAAATCGACATTATCAGAGTTGAAATTAGCTGATTTTAGGCTTAAATTTGGGATTTTTTGGGCTAAAAATCGTCGTTTTTGCTGAGTCAAATTGTCAATTTCAAGAGGCAAATTCGACTTTTTCGGGCCAAAATTTCTCATTTTCAGACTCGAAATTAGCAATTTTCAGGCTTACAAATTCAGAATTTTGTTAATTTTTCGGCGAAAATTTTGGGAATTTAAAGCTCAAATTTGCGATTTTATAAGCTAGAGAATTGTCATTTTTAAGAGCGAAAATTCTAGATTTTTCAGGAAAAAATGACAAATTTTTTGGCTGAAATTTGGGATTTTTAGGGGATAAAAATCAGCATTTTCAAGTGAATATCGTCGTTTTTGGCCGTAAGGTGTAGTGTTTGCGGACTTTCGGCTCTACCGTAACCCGAAAAACCTGGAAATTGAGCTAGAAAGTTCTAGAAACGTCTGTCTAGACCCATTTTTCACGCTGACTCCGGATGTGATAGCCGTTTTTGTAATTTTCAGTAGTTATGTTAGGGATTTGGGATTTTTGAATTTTTTGGTTTTAGAAAATTTTAAAAACTGAGCTTCAAATTTTTTTTCGACAATTTTCGTTATCAAATTTGAATTCAGCGTCCCAAAATTACTAGAAATCTTAATTTACAGCGTTCTAGCTCA</canonical>
            <polymorphic>GACGCACTCTGGAAATTAGGCGGAAATTCCAGATTTTTTGGGTCCAAATTTGCTAATTTTGGGCTTAAACTTGGTATTTTTAATGCTAGAAATCGCCATTTTCAGACTCGAAATTGTCCAATTTATGCTTAAATTTTTTTTTCGGGATTTTCGGGTCAAATTTGGCATTTTCAGGGTCGAAATTGGCTGATTTCAGGATTCAACTTCGTTGTTTTCTAAGGCTAAAAATCAGATTTTCAAACTTAAAATCGGCTAATTTAAGCCCTAAATTTGAGATTTCAAGACTAAAAACCGTCATTTTTGGCTAAAAGTCCGCATTTTAAACTGAAAAATCGACATTATCAGAGTTGAAATTAGCTGATTTTAGGCTTAAATTTGGGATTTTTTGGGCTAAAAATCGTCGTTTTTGCTGAGTCAAATTGTCAATTTCAAGAGGCAAATTCGACTTTTTCGGGCCAAAATTTCTCATTTTCAGACTCGAAATTAGCAATTTTCAGGCWTACAAATTCAGAATTTTGTTAATTTTTCGGCGAAAATTTTGGGAATTTAAAGCTCAAATTTGCGATTTTATAAGCTAGAGAATTGTCATTTTTAAGAGCGAAAATTCTAGATTTTTCAGGAAAAAATGACAAATTTTTTGGCTGAAATTTGGGATTTTTAGGGGATAAAAATCAGCATTTTCAAGTGAATATCGTCGTTTTTGGCCGTAAGGTGTAGTGTTTGCGGACTTTCGGCTCTACCGTAACCCGAAAAACCTGGAAATTGAGCTAGAAAGTTCTAGAAACGTCTGTCTAGACCCATTTTTCACGCTGACTCCGGATGTGATAGCCGTTTTTGTAATTTTCAGTAGTTATGTTAGGGATTTGGGATTTTTGAATTTTTTGGTTTTAGAAAATTTTAAAAACTGAGCTTCAAATTTTTTTTCGACAATTTTCGTTATCAAATTTGAATTCAGCGTCCCAAAATTACTAGAAATCTTAATTTACAGCGTTCTAGCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>123 87 81 67 65 63 63 61 54 53 43 42 35 33 31 30 22 22 11 10 4</canonical_bands>
                <polymorphic_bands>123 97 87 81 67 65 63 63 61 53 42 35 33 31 30 22 22 11 10 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCGACATTATCAGAGTTGAAA</pcr_primer_p1>
		<pcr_primer_p2>CTCTAGCTTATAAAATCGCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCGACATTATCAGAGTTGAAATTAGCTGATTTTAGGCTTAAATTTGGGATTTTTTGGGCTAAAAATCGTCGTTTTTGCTGAGTCAAATTGTCAATTTCAAGAGGCAAATTCGACTTTTTCGGGCCAAAATTTCTCATTTTCAGACTCGAAATTAGCAATTTTCAGGCTTACAAATTCAGAATTTTGTTAATTTTTCGGCGAAAATTTTGGGAATTTAAAGCTCAAATTTGCGATTTTATAAGCTAGAG</canonical_amplicon>
		<polymorphic_amplicon>AATCGACATTATCAGAGTTGAAATTAGCTGATTTTAGGCTTAAATTTGGGATTTTTTGGGCTAAAAATCGTCGTTTTTGCTGAGTCAAATTGTCAATTTCAAGAGGCAAATTCGACTTTTTCGGGCCAAAATTTCTCATTTTCAGACTCGAAATTAGCAATTTTCAGGCWTACAAATTCAGAATTTTGTTAATTTTTCGGCGAAAATTTTGGGAATTTAAAGCTCAAATTTGCGATTTTATAAGCTAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23376</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>178844</contig_pos>
        <strand></strand>
        <context>CWTACAAATT[C/T]AGAATTTTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTTCTCATTTTCAGACTCGAAATTAGCAATTTTCAGGCTTACAAATT</left_flank>
        <right_flank>AGAATTTTGTTAATTTTTCGGCGAAAATTTTGGGAATTTAAAGCTCAAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAAATTAGGCGGAAATTCCAGATTTTTTGGGTCCAAATTTGCTAATTTTGGGCTTAAACTTGGTATTTTTAATGCTAGAAATCGCCATTTTCAGACTCGAAATTGTCCAATTTATGCTTAAATTTTTTTTTCGGGATTTTCGGGTCAAATTTGGCATTTTCAGGGTCGAAATTGGCTGATTTCAGGATTCAACTTCGTTGTTTTCTAAGGCTAAAAATCAGATTTTCAAACTTAAAATCGGCTAATTTAAGCCCTAAATTTGAGATTTCAAGACTAAAAACCGTCATTTTTGGCTAAAAGTCCGCATTTTAAACTGAAAAATCGACATTATCAGAGTTGAAATTAGCTGATTTTAGGCTTAAATTTGGGATTTTTTGGGCTAAAAATCGTCGTTTTTGCTGAGTCAAATTGTCAATTTCAAGAGGCAAATTCGACTTTTTCGGGCCAAAATTTCTCATTTTCAGACTCGAAATTAGCAATTTTCAGGCTTACAAATTCAGAATTTTGTTAATTTTTCGGCGAAAATTTTGGGAATTTAAAGCTCAAATTTGCGATTTTATAAGCTAGAGAATTGTCATTTTTAAGAGCGAAAATTCTAGATTTTTCAGGAAAAAATGACAAATTTTTTGGCTGAAATTTGGGATTTTTAGGGGATAAAAATCAGCATTTTCAAGTGAATATCGTCGTTTTTGGCCGTAAGGTGTAGTGTTTGCGGACTTTCGGCTCTACCGTAACCCGAAAAACCTGGAAATTGAGCTAGAAAGTTCTAGAAACGTCTGTCTAGACCCATTTTTCACGCTGACTCCGGATGTGATAGCCGTTTTTGTAATTTTCAGTAGTTATGTTAGGGATTTGGGATTTTTGAATTTTTTGGTTTTAGAAAATTTTAAAAACTGAGCTTCAAATTTTTTTTCGACAATTTTCGTTATCAAATTTGAATTCAGCGTCCCAAAATTACTAGAAATCTTAATTTACAGCGTTCTAGCTCAAAGTGTCGT</canonical>
            <polymorphic>TGGAAATTAGGCGGAAATTCCAGATTTTTTGGGTCCAAATTTGCTAATTTTGGGCTTAAACTTGGTATTTTTAATGCTAGAAATCGCCATTTTCAGACTCGAAATTGTCCAATTTATGCTTAAATTTTTTTTTCGGGATTTTCGGGTCAAATTTGGCATTTTCAGGGTCGAAATTGGCTGATTTCAGGATTCAACTTCGTTGTTTTCTAAGGCTAAAAATCAGATTTTCAAACTTAAAATCGGCTAATTTAAGCCCTAAATTTGAGATTTCAAGACTAAAAACCGTCATTTTTGGCTAAAAGTCCGCATTTTAAACTGAAAAATCGACATTATCAGAGTTGAAATTAGCTGATTTTAGGCTTAAATTTGGGATTTTTTGGGCTAAAAATCGTCGTTTTTGCTGAGTCAAATTGTCAATTTCAAGAGGCAAATTCGACTTTTTCGGGCCAAAATTTCTCATTTTCAGACTCGAAATTAGCAATTTTCAGGCTTACAAATTYAGAATTTTGTTAATTTTTCGGCGAAAATTTTGGGAATTTAAAGCTCAAATTTGCGATTTTATAAGCTAGAGAATTGTCATTTTTAAGAGCGAAAATTCTAGATTTTTCAGGAAAAAATGACAAATTTTTTGGCTGAAATTTGGGATTTTTAGGGGATAAAAATCAGCATTTTCAAGTGAATATCGTCGTTTTTGGCCGTAAGGTGTAGTGTTTGCGGACTTTCGGCTCTACCGTAACCCGAAAAACCTGGAAATTGAGCTAGAAAGTTCTAGAAACGTCTGTCTAGACCCATTTTTCACGCTGACTCCGGATGTGATAGCCGTTTTTGTAATTTTCAGTAGTTATGTTAGGGATTTGGGATTTTTGAATTTTTTGGTTTTAGAAAATTTTAAAAACTGAGCTTCAAATTTTTTTTCGACAATTTTCGTTATCAAATTTGAATTCAGCGTCCCAAAATTACTAGAAATCTTAATTTACAGCGTTCTAGCTCAAAGTGTCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>230 109 105 85 66 61 46 45 29 28 27 23 22 21 21 18 15 14 13 9 7 6</canonical_bands>
                <polymorphic_bands>230 109 105 85 66 61 52 46 29 28 27 23 22 21 21 18 15 14 13 9 6</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>499 130 127 113 95 36</canonical_bands>
                <polymorphic_bands>535 130 127 113 95</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCGACATTATCAGAGTTGAAA</pcr_primer_p1>
		<pcr_primer_p2>CTCTAGCTTATAAAATCGCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCGACATTATCAGAGTTGAAATTAGCTGATTTTAGGCTTAAATTTGGGATTTTTTGGGCTAAAAATCGTCGTTTTTGCTGAGTCAAATTGTCAATTTCAAGAGGCAAATTCGACTTTTTCGGGCCAAAATTTCTCATTTTCAGACTCGAAATTAGCAATTTTCAGGCTTACAAATTCAGAATTTTGTTAATTTTTCGGCGAAAATTTTGGGAATTTAAAGCTCAAATTTGCGATTTTATAAGCTAGAG</canonical_amplicon>
		<polymorphic_amplicon>AATCGACATTATCAGAGTTGAAATTAGCTGATTTTAGGCTTAAATTTGGGATTTTTTGGGCTAAAAATCGTCGTTTTTGCTGAGTCAAATTGTCAATTTCAAGAGGCAAATTCGACTTTTTCGGGCCAAAATTTCTCATTTTCAGACTCGAAATTAGCAATTTTCAGGCTTACAAATTYAGAATTTTGTTAATTTTTCGGCGAAAATTTTGGGAATTTAAAGCTCAAATTTGCGATTTTATAAGCTAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23377</snp_id>
        <super_contig>c000000774.Contig4</super_contig>
        <contig_pos>178877</contig_pos>
        <strand></strand>
        <context>GAAAATTTTG[G/T]GAATTTAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCAGGCTTACAAATTCAGAATTTTGTTAATTTTTCGGCGAAAATTTTG</left_flank>
        <right_flank>GAATTTAAAGCTCAAATTTGCGATTTTATAAGCTAGAGAATTGTCATTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAAATTTGCTAATTTTGGGCTTAAACTTGGTATTTTTAATGCTAGAAATCGCCATTTTCAGACTCGAAATTGTCCAATTTATGCTTAAATTTTTTTTTCGGGATTTTCGGGTCAAATTTGGCATTTTCAGGGTCGAAATTGGCTGATTTCAGGATTCAACTTCGTTGTTTTCTAAGGCTAAAAATCAGATTTTCAAACTTAAAATCGGCTAATTTAAGCCCTAAATTTGAGATTTCAAGACTAAAAACCGTCATTTTTGGCTAAAAGTCCGCATTTTAAACTGAAAAATCGACATTATCAGAGTTGAAATTAGCTGATTTTAGGCTTAAATTTGGGATTTTTTGGGCTAAAAATCGTCGTTTTTGCTGAGTCAAATTGTCAATTTCAAGAGGCAAATTCGACTTTTTCGGGCCAAAATTTCTCATTTTCAGACTCGAAATTAGCAATTTTCAGGCTTACAAATTCAGAATTTTGTTAATTTTTCGGCGAAAATTTTGGGAATTTAAAGCTCAAATTTGCGATTTTATAAGCTAGAGAATTGTCATTTTTAAGAGCGAAAATTCTAGATTTTTCAGGAAAAAATGACAAATTTTTTGGCTGAAATTTGGGATTTTTAGGGGATAAAAATCAGCATTTTCAAGTGAATATCGTCGTTTTTGGCCGTAAGGTGTAGTGTTTGCGGACTTTCGGCTCTACCGTAACCCGAAAAACCTGGAAATTGAGCTAGAAAGTTCTAGAAACGTCTGTCTAGACCCATTTTTCACGCTGACTCCGGATGTGATAGCCGTTTTTGTAATTTTCAGTAGTTATGTTAGGGATTTGGGATTTTTGAATTTTTTGGTTTTAGAAAATTTTAAAAACTGAGCTTCAAATTTTTTTTCGACAATTTTCGTTATCAAATTTGAATTCAGCGTCCCAAAATTACTAGAAATCTTAATTTACAGCGTTCTAGCTCAAAGTGTCGTAAGATGTGGTGTTTGCGTACTTTTGGCGCTACA</canonical>
            <polymorphic>TCCAAATTTGCTAATTTTGGGCTTAAACTTGGTATTTTTAATGCTAGAAATCGCCATTTTCAGACTCGAAATTGTCCAATTTATGCTTAAATTTTTTTTTCGGGATTTTCGGGTCAAATTTGGCATTTTCAGGGTCGAAATTGGCTGATTTCAGGATTCAACTTCGTTGTTTTCTAAGGCTAAAAATCAGATTTTCAAACTTAAAATCGGCTAATTTAAGCCCTAAATTTGAGATTTCAAGACTAAAAACCGTCATTTTTGGCTAAAAGTCCGCATTTTAAACTGAAAAATCGACATTATCAGAGTTGAAATTAGCTGATTTTAGGCTTAAATTTGGGATTTTTTGGGCTAAAAATCGTCGTTTTTGCTGAGTCAAATTGTCAATTTCAAGAGGCAAATTCGACTTTTTCGGGCCAAAATTTCTCATTTTCAGACTCGAAATTAGCAATTTTCAGGCTTACAAATTCAGAATTTTGTTAATTTTTCGGCGAAAATTTTGKGAATTTAAAGCTCAAATTTGCGATTTTATAAGCTAGAGAATTGTCATTTTTAAGAGCGAAAATTCTAGATTTTTCAGGAAAAAATGACAAATTTTTTGGCTGAAATTTGGGATTTTTAGGGGATAAAAATCAGCATTTTCAAGTGAATATCGTCGTTTTTGGCCGTAAGGTGTAGTGTTTGCGGACTTTCGGCTCTACCGTAACCCGAAAAACCTGGAAATTGAGCTAGAAAGTTCTAGAAACGTCTGTCTAGACCCATTTTTCACGCTGACTCCGGATGTGATAGCCGTTTTTGTAATTTTCAGTAGTTATGTTAGGGATTTGGGATTTTTGAATTTTTTGGTTTTAGAAAATTTTAAAAACTGAGCTTCAAATTTTTTTTCGACAATTTTCGTTATCAAATTTGAATTCAGCGTCCCAAAATTACTAGAAATCTTAATTTACAGCGTTCTAGCTCAAAGTGTCGTAAGATGTGGTGTTTGCGTACTTTTGGCGCTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAGGCTTAAATTTGGGATTT</pcr_primer_p1>
		<pcr_primer_p2>TCTAGAATTTTCGCTCTTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTAGGCTTAAATTTGGGATTTTTTGGGCTAAAAATCGTCGTTTTTGCTGAGTCAAATTGTCAATTTCAAGAGGCAAATTCGACTTTTTCGGGCCAAAATTTCTCATTTTCAGACTCGAAATTAGCAATTTTCAGGCTTACAAATTCAGAATTTTGTTAATTTTTCGGCGAAAATTTTGGGAATTTAAAGCTCAAATTTGCGATTTTATAAGCTAGAGAATTGTCATTTTTAAGAGCGAAAATTCTAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTAGGCTTAAATTTGGGATTTTTTGGGCTAAAAATCGTCGTTTTTGCTGAGTCAAATTGTCAATTTCAAGAGGCAAATTCGACTTTTTCGGGCCAAAATTTCTCATTTTCAGACTCGAAATTAGCAATTTTCAGGCTTACAAATTCAGAATTTTGTTAATTTTTCGGCGAAAATTTTGKGAATTTAAAGCTCAAATTTGCGATTTTATAAGCTAGAGAATTGTCATTTTTAAGAGCGAAAATTCTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23378</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>30541</contig_pos>
        <strand></strand>
        <context>GAAAATCTTA[A/C]ACTTTCCCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCTTCAAAAACAATCGAACACCCTCCTTTTGTCACCCCTAGAAAATCTTA</left_flank>
        <right_flank>ACTTTCCCAGAAAAAAAGCGAAAAGCCTTTTTCTTTTTTCGCCTCATTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACCTTCTGTTCCCTCCAATCGTGTAATCGAACCTGTTTCCGAAGTTTGTCTCTTTTTTCCTTCTGTTCGACAATCACTCTGAATAGGACACTTTGGTTAATCTTTTTGGTTTTATTGGTCATCCATGACCGAGGATTTCCGAAAATGGGAATTTTGGAAATTCGATGCAAAAGAAATTTAAGAATCCTAAAAATCCTAAGAATCCTAAGAATCCTAAGAATCTCAGAAAATTCAGAATTTCTAAAAAAAACCTTACTTCTGAACATCATCAATCATAATCGAATGCGTTATTGAGTGATCGTCCAGCTCTTCCAGAAATTTCGGTCCTTTTTCATCAGAAACCATCACATGAACCTCTTTTCCGGCTTCCGATGGTGATTTCCAGAAGTCTAGCTAGAAATTTTGAATTTTGAATTTTTGAATTTTTTCGGTATTTTAGGCTTTTTGGCTTCAAAAACAATCGAACACCCTCCTTTTGTCACCCCTAGAAAATCTTAAACTTTCCCAGAAAAAAAGCGAAAAGCCTTTTTCTTTTTTCGCCTCATTTTTTTGTCCTTATAACGTTTAGAACAGGTTGTTAACATACACCGAATGTATCCTCCAAACAATGTAACATGTCAGCAAAAAAAGGAAAACTGATTGAATAAGATGTGATTGTATTCTAAAAGAAGAAGAAGTGATGATATTCCAATCATATCGACCACATTTTATTGTAATACGCTTTTGGTGGAACGTATTGTGTATTATACATAGGCACCACAAAAAAAATTTTCAAAATGGATTTTTCCCAGTTTTTATTGTTGGATTGTCTTCTCCTACTTTATAGAAGTTCATTCCCAAATTTTCAGCGAAAAATCTTCATTCAATCCCGAGATACAGACCCTTTTGTACCTGACCTCAATGTACTGACTTTCTCCTCATTGTTTTGCGGTGCGCAGAAAAGTGGGCGGGGTTTAGAGCTTGCAATCCTGCGGCGCGGAAAATTCGTGAAGGAAATT</canonical>
            <polymorphic>TCACCTTCTGTTCCCTCCAATCGTGTAATCGAACCTGTTTCCGAAGTTTGTCTCTTTTTTCCTTCTGTTCGACAATCACTCTGAATAGGACACTTTGGTTAATCTTTTTGGTTTTATTGGTCATCCATGACCGAGGATTTCCGAAAATGGGAATTTTGGAAATTCGATGCAAAAGAAATTTAAGAATCCTAAAAATCCTAAGAATCCTAAGAATCCTAAGAATCTCAGAAAATTCAGAATTTCTAAAAAAAACCTTACTTCTGAACATCATCAATCATAATCGAATGCGTTATTGAGTGATCGTCCAGCTCTTCCAGAAATTTCGGTCCTTTTTCATCAGAAACCATCACATGAACCTCTTTTCCGGCTTCCGATGGTGATTTCCAGAAGTCTAGCTAGAAATTTTGAATTTTGAATTTTTGAATTTTTTCGGTATTTTAGGCTTTTTGGCTTCAAAAACAATCGAACACCCTCCTTTTGTCACCCCTAGAAAATCTTAMACTTTCCCAGAAAAAAAGCGAAAAGCCTTTTTCTTTTTTCGCCTCATTTTTTTGTCCTTATAACGTTTAGAACAGGTTGTTAACATACACCGAATGTATCCTCCAAACAATGTAACATGTCAGCAAAAAAAGGAAAACTGATTGAATAAGATGTGATTGTATTCTAAAAGAAGAAGAAGTGATGATATTCCAATCATATCGACCACATTTTATTGTAATACGCTTTTGGTGGAACGTATTGTGTATTATACATAGGCACCACAAAAAAAATTTTCAAAATGGATTTTTCCCAGTTTTTATTGTTGGATTGTCTTCTCCTACTTTATAGAAGTTCATTCCCAAATTTTCAGCGAAAAATCTTCATTCAATCCCGAGATACAGACCCTTTTGTACCTGACCTCAATGTACTGACTTTCTCCTCATTGTTTTGCGGTGCGCAGAAAAGTGGGCGGGGTTTAGAGCTTGCAATCCTGCGGCGCGGAAAATTCGTGAAGGAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>420 317 99 83 81</canonical_bands>
                <polymorphic_bands>420 400 99 81</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTTTGGCTTCAAAAACAAT</pcr_primer_p1>
		<pcr_primer_p2>TGGAATATCATCACTTCTTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTTTGGCTTCAAAAACAATCGAACACCCTCCTTTTGTCACCCCTAGAAAATCTTAAACTTTCCCAGAAAAAAAGCGAAAAGCCTTTTTCTTTTTTCGCCTCATTTTTTTGTCCTTATAACGTTTAGAACAGGTTGTTAACATACACCGAATGTATCCTCCAAACAATGTAACATGTCAGCAAAAAAAGGAAAACTGATTGAATAAGATGTGATTGTATTCTAAAAGAAGAAGAAGTGATGATATTCCA</canonical_amplicon>
		<polymorphic_amplicon>CTTTTTGGCTTCAAAAACAATCGAACACCCTCCTTTTGTCACCCCTAGAAAATCTTAMACTTTCCCAGAAAAAAAGCGAAAAGCCTTTTTCTTTTTTCGCCTCATTTTTTTGTCCTTATAACGTTTAGAACAGGTTGTTAACATACACCGAATGTATCCTCCAAACAATGTAACATGTCAGCAAAAAAAGGAAAACTGATTGAATAAGATGTGATTGTATTCTAAAAGAAGAAGAAGTGATGATATTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23379</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>33849</contig_pos>
        <strand></strand>
        <context>aagtgaaagC[A/T]AAGCTCCGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAACACTTTTTGGTACCTTCTACAGGAGCCGAGATAACTTAAGTGAAAGC</left_flank>
        <right_flank>AAGCTCCGTAACGGCTCGCTTGTTATATAAGAGCCCCCTACTTTGAGCTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCGGCTCTTGTGAAAGGTATCAAAAATATGTTAACTGATAATAAATTGGTGATAAAATGATAAACATTTTATCAGTTGATCATTTTTTGATACCTTGCACGGGAACAGTGATAAATTGGCTCGAAGTTGGATGGTTTGGGGGTGCCGCCCATACAGTTTCTATATACTTTACTAGCTCAGCTCCTGGCAAAGATACCAAAAAATGGTCAACTAACAAAATATTGATGATAAAATGATAAACATTTTATTAGTTGATTACTTTTTGATATCTTGCACAGGAACAGTGATGATGGGGTCAAAGTTGGCGGGTTTAAAGATAACAGCTTAAATAGCCACGCCACCGAACACCTGTCCTTTAAGCTCAATTATCTCGGCTCATGTGGAAGATGTCAAAAAGTGAACCATTGATAAAATGTTGCTGATATTATGTTAAATATTTTATCAGTTGAACACTTTTTGGTACCTTCTACAGGAGCCGAGATAACTTAAGTGAAAGCAAAGCTCCGTAACGGCTCGCTTGTTATATAAGAGCCCCCTACTTTGAGCTTAAATATCTCGGCTCTTGGGAGAGATATCAAAAAGATGTACACTAATAAAATATTGCTGATAAAGTGATAAACATTTTACCAGTTGACCATTTTTTGATATCTCTCATAGAAATTGAGATAAATTGGATAAAAGTTTTATTGGATGTGTGATAACGTGCTCGCTCTATTGTTAAATTTCAATAGCGTTCTAGTGATTATGTCAAAAAAAAATCGAATTGTCTGAACCAACAACATAAAAAATCAGATTTTTCCAAAAAAATTATTTTAATGGTCATATTTATTTATTTTTGGTTTTCTAATTTTTACTGAAAACCCGTCGTTTTGCAGGTGATCAAATATATACAGAAAAGATATAATTGAGTTTATTTTGGTCACGAATTCTGGAAAAAATTAAATTCAAATGCATATTTATGAAATTTCAGGGGTTGGAGAATCAAGAAGTTTTGAAAG</canonical>
            <polymorphic>TCTCGGCTCTTGTGAAAGGTATCAAAAATATGTTAACTGATAATAAATTGGTGATAAAATGATAAACATTTTATCAGTTGATCATTTTTTGATACCTTGCACGGGAACAGTGATAAATTGGCTCGAAGTTGGATGGTTTGGGGGTGCCGCCCATACAGTTTCTATATACTTTACTAGCTCAGCTCCTGGCAAAGATACCAAAAAATGGTCAACTAACAAAATATTGATGATAAAATGATAAACATTTTATTAGTTGATTACTTTTTGATATCTTGCACAGGAACAGTGATGATGGGGTCAAAGTTGGCGGGTTTAAAGATAACAGCTTAAATAGCCACGCCACCGAACACCTGTCCTTTAAGCTCAATTATCTCGGCTCATGTGGAAGATGTCAAAAAGTGAACCATTGATAAAATGTTGCTGATATTATGTTAAATATTTTATCAGTTGAACACTTTTTGGTACCTTCTACAGGAGCCGAGATAACTTAAGTGAAAGCWAAGCTCCGTAACGGCTCGCTTGTTATATAAGAGCCCCCTACTTTGAGCTTAAATATCTCGGCTCTTGGGAGAGATATCAAAAAGATGTACACTAATAAAATATTGCTGATAAAGTGATAAACATTTTACCAGTTGACCATTTTTTGATATCTCTCATAGAAATTGAGATAAATTGGATAAAAGTTTTATTGGATGTGTGATAACGTGCTCGCTCTATTGTTAAATTTCAATAGCGTTCTAGTGATTATGTCAAAAAAAAATCGAATTGTCTGAACCAACAACATAAAAAATCAGATTTTTCCAAAAAAATTATTTTAATGGTCATATTTATTTATTTTTGGTTTTCTAATTTTTACTGAAAACCCGTCGTTTTGCAGGTGATCAAATATATACAGAAAAGATATAATTGAGTTTATTTTGGTCACGAATTCTGGAAAAAATTAAATTCAAATGCATATTTATGAAATTTCAGGGGTTGGAGAATCAAGAAGTTTTGAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAGGGTTAGACAGGATTTC</pcr_primer_p1>
		<pcr_primer_p2>CACGTTATCACACATCCAATAA</pcr_primer_p2>
		<pcr_amplicon_size>756</pcr_amplicon_size>
		<canonical_amplicon>CAAAGCTCCGTAACGGCTCGCTTGTTATATAAGAGCCCCCTACTTTGAGCTTAAATATCTCGGCTCTTGGGAGAGATATCAAAAAGATGTACACTAATAAAATATTGCTGATAAAGTGATAAACATTTTACCAGTTGACCATTTTTTGATATCTCTCATAGAAATTGAGATAAATTGGATAAAAGTTTTATTGGATGTGTGATAACGTG</canonical_amplicon>
		<polymorphic_amplicon>CWAAGCTCCGTAACGGCTCGCTTGTTATATAAGAGCCCCCTACTTTGAGCTTAAATATCTCGGCTCTTGGGAGAGATATCAAAAAGATGTACACTAATAAAATATTGCTGATAAAGTGATAAACATTTTACCAGTTGACCATTTTTTGATATCTCTCATAGAAATTGAGATAAATTGGATAAAAGTTTTATTGGATGTGTGATAACGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23380</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>33950</contig_pos>
        <strand></strand>
        <context>actaataaaa[T/C]attgctgata</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAATATCTCGGCTCTTGGGAGAGATATCAAAAAGATGTACACTAATAAAA</left_flank>
        <right_flank>ATTGCTGATAAAGTGATAAACATTTTACCAGTTGACCATTTTTTGATATC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGGAACAGTGATAAATTGGCTCGAAGTTGGATGGTTTGGGGGTGCCGCCCATACAGTTTCTATATACTTTACTAGCTCAGCTCCTGGCAAAGATACCAAAAAATGGTCAACTAACAAAATATTGATGATAAAATGATAAACATTTTATTAGTTGATTACTTTTTGATATCTTGCACAGGAACAGTGATGATGGGGTCAAAGTTGGCGGGTTTAAAGATAACAGCTTAAATAGCCACGCCACCGAACACCTGTCCTTTAAGCTCAATTATCTCGGCTCATGTGGAAGATGTCAAAAAGTGAACCATTGATAAAATGTTGCTGATATTATGTTAAATATTTTATCAGTTGAACACTTTTTGGTACCTTCTACAGGAGCCGAGATAACTTAAGTGAAAGCAAAGCTCCGTAACGGCTCGCTTGTTATATAAGAGCCCCCTACTTTGAGCTTAAATATCTCGGCTCTTGGGAGAGATATCAAAAAGATGTACACTAATAAAATATTGCTGATAAAGTGATAAACATTTTACCAGTTGACCATTTTTTGATATCTCTCATAGAAATTGAGATAAATTGGATAAAAGTTTTATTGGATGTGTGATAACGTGCTCGCTCTATTGTTAAATTTCAATAGCGTTCTAGTGATTATGTCAAAAAAAAATCGAATTGTCTGAACCAACAACATAAAAAATCAGATTTTTCCAAAAAAATTATTTTAATGGTCATATTTATTTATTTTTGGTTTTCTAATTTTTACTGAAAACCCGTCGTTTTGCAGGTGATCAAATATATACAGAAAAGATATAATTGAGTTTATTTTGGTCACGAATTCTGGAAAAAATTAAATTCAAATGCATATTTATGAAATTTCAGGGGTTGGAGAATCAAGAAGTTTTGAAAGTTGAGCGAGAACTTTTCAGATTTTCCAGATTTTCTAAAAGTCCAAATACCGTAAAACCTCTATTAGAAGGGCCGGCCCTTCTATTGTTACAAGGTACCTTT</canonical>
            <polymorphic>CGGGAACAGTGATAAATTGGCTCGAAGTTGGATGGTTTGGGGGTGCCGCCCATACAGTTTCTATATACTTTACTAGCTCAGCTCCTGGCAAAGATACCAAAAAATGGTCAACTAACAAAATATTGATGATAAAATGATAAACATTTTATTAGTTGATTACTTTTTGATATCTTGCACAGGAACAGTGATGATGGGGTCAAAGTTGGCGGGTTTAAAGATAACAGCTTAAATAGCCACGCCACCGAACACCTGTCCTTTAAGCTCAATTATCTCGGCTCATGTGGAAGATGTCAAAAAGTGAACCATTGATAAAATGTTGCTGATATTATGTTAAATATTTTATCAGTTGAACACTTTTTGGTACCTTCTACAGGAGCCGAGATAACTTAAGTGAAAGCAAAGCTCCGTAACGGCTCGCTTGTTATATAAGAGCCCCCTACTTTGAGCTTAAATATCTCGGCTCTTGGGAGAGATATCAAAAAGATGTACACTAATAAAAYATTGCTGATAAAGTGATAAACATTTTACCAGTTGACCATTTTTTGATATCTCTCATAGAAATTGAGATAAATTGGATAAAAGTTTTATTGGATGTGTGATAACGTGCTCGCTCTATTGTTAAATTTCAATAGCGTTCTAGTGATTATGTCAAAAAAAAATCGAATTGTCTGAACCAACAACATAAAAAATCAGATTTTTCCAAAAAAATTATTTTAATGGTCATATTTATTTATTTTTGGTTTTCTAATTTTTACTGAAAACCCGTCGTTTTGCAGGTGATCAAATATATACAGAAAAGATATAATTGAGTTTATTTTGGTCACGAATTCTGGAAAAAATTAAATTCAAATGCATATTTATGAAATTTCAGGGGTTGGAGAATCAAGAAGTTTTGAAAGTTGAGCGAGAACTTTTCAGATTTTCCAGATTTTCTAAAAGTCCAAATACCGTAAAACCTCTATTAGAAGGGCCGGCCCTTCTATTGTTACAAGGTACCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 215 164 121</canonical_bands>
                <polymorphic_bands>664 215 121</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAGGGTTAGACAGGATTTC</pcr_primer_p1>
		<pcr_primer_p2>CACGTTATCACACATCCAATAA</pcr_primer_p2>
		<pcr_amplicon_size>756</pcr_amplicon_size>
		<canonical_amplicon>ATATTGCTGATAAAGTGATAAACATTTTACCAGTTGACCATTTTTTGATATCTCTCATAGAAATTGAGATAAATTGGATAAAAGTTTTATTGGATGTGTGATAACGTG</canonical_amplicon>
		<polymorphic_amplicon>AYATTGCTGATAAAGTGATAAACATTTTACCAGTTGACCATTTTTTGATATCTCTCATAGAAATTGAGATAAATTGGATAAAAGTTTTATTGGATGTGTGATAACGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23381</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>34203</contig_pos>
        <strand>+</strand>
        <context>TTCKAATTTT[G/T]ACTGAAAACC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAAATTATTTTAATGGTCATATTTATTTATTTTTGGTTTTCTAATTTT</left_flank>
        <right_flank>ACTGAAAACCCGTCGTTTTGCAGGTGATCAAATATATACAGAAAAGATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTTAAGCTCAATTATCTCGGCTCATGTGGAAGATGTCAAAAAGTGAACCATTGATAAAATGTTGCTGATATTATGTTAAATATTTTATCAGTTGAACACTTTTTGGTACCTTCTACAGGAGCCGAGATAACTTAAGTGAAAGCAAAGCTCCGTAACGGCTCGCTTGTTATATAAGAGCCCCCTACTTTGAGCTTAAATATCTCGGCTCTTGGGAGAGATATCAAAAAGATGTACACTAATAAAATATTGCTGATAAAGTGATAAACATTTTACCAGTTGACCATTTTTTGATATCTCTCATAGAAATTGAGATAAATTGGATAAAAGTTTTATTGGATGTGTGATAACGTGCTCGCTCTATTGTTAAATTTCAATAGCGTTCTAGTGATTATGTCAAAAAAAAATCGAATTGTCTGAACCAACAACATAAAAAATCAGATTTTTCCAAAAAAATTATTTTAATGGTCATATTTATTTATTTTTGGTTTTCTAATTTTTACTGAAAACCCGTCGTTTTGCAGGTGATCAAATATATACAGAAAAGATATAATTGAGTTTATTTTGGTCACGAATTCTGGAAAAAATTAAATTCAAATGCATATTTATGAAATTTCAGGGGTTGGAGAATCAAGAAGTTTTGAAAGTTGAGCGAGAACTTTTCAGATTTTCCAGATTTTCTAAAAGTCCAAATACCGTAAAACCTCTATTAGAAGGGCCGGCCCTTCTATTGTTACAAGGTACCTTTGGAGGGCCCTTTTATTAGAGGGGCCCTTTTAATAAAGGGGCCCTTCTAATACAGGTTTTAAGCTATACTATGTTTCTTTTCTGTCTATTTTTTCCCAAGTCTTTTTTTATTTTAGGTAGACAAATAAAAATAAAAATAAAACAAAAAGAATTAAGAGGAGAGTCCGGAATGTTTATTTACCCGGAAGTTTACTCAAACATCAAGTTCAAAAAAAGCATAAATGTGGAAAAAGAACAAAATTTGAATTTTCAGA</canonical>
            <polymorphic>CCTTTAAGCTCAATTATCTCGGCTCATGTGGAAGATGTCAAAAAGTGAACCATTGATAAAATGTTGCTGATATTATGTTAAATATTTTATCAGTTGAACACTTTTTGGTACCTTCTACAGGAGCCGAGATAACTTAAGTGAAAGCAAAGCTCCGTAACGGCTCGCTTGTTATATAAGAGCCCCCTACTTTGAGCTTAAATATCTCGGCTCTTGGGAGAGATATCAAAAAGATGTACACTAATAAAATATTGCTGATAAAGTGATAAACATTTTACCAGTTGACCATTTTTTGATATCTCTCATAGAAATTGAGATAAATTGGATAAAAGTTTTATTGGATGTGTGATAACGTGCTCGCTCTATTGTTAAATTTCAATAGCGTTCTAGTGATTATGTCAAAAAAAAATCGAATTGTCTGAACCAACAACATAAAAAATCAGATTTTTCCAAAAAAATTATTTTAATGGTCATATTTATTTATTTTTGGTTTTCTAATTTTKACTGAAAACCCGTCGTTTTGCAGGTGATCAAATATATACAGAAAAGATATAATTGAGTTTATTTTGGTCACGAATTCTGGAAAAAATTAAATTCAAATGCATATTTATGAAATTTCAGGGGTTGGAGAATCAAGAAGTTTTGAAAGTTGAGCGAGAACTTTTCAGATTTTCCAGATTTTCTAAAAGTCCAAATACCGTAAAACCTCTATTAGAAGGGCCGGCCCTTCTATTGTTACAAGGTACCTTTGGAGGGCCCTTTTATTAGAGGGGCCCTTTTAATAAAGGGGCCCTTCTAATACAGGTTTTAAGCTATACTATGTTTCTTTTCTGTCTATTTTTTCCCAAGTCTTTTTTTATTTTAGGTAGACAAATAAAAATAAAAATAAAACAAAAAGAATTAAGAGGAGAGTCCGGAATGTTTATTTACCCGGAAGTTTACTCAAACATCAAGTTCAAAAAAAGCATAAATGTGGAAAAAGAACAAAATTTGAATTTTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATAACGTGCTCGCTCTATT</pcr_primer_p1>
		<pcr_primer_p2>AATTCGTGACCAAAATAAACTC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>GATAACGTGCTCGCTCTATTGTTAAATTTCAATAGCGTTCTAGTGATTATGTCAAAAAAAAATCGAATTGTCTGAACCAACAACATAAAAAATCAGATTTTTCCAAAAAAATTATTTTAATGGTCATATTTATTTATTTTTGGTTTTCTAATTTTTACTGAAAACCCGTCGTTTTGCAGGTGATCAAATATATACAGAAAAGATATAATTGAGTTTATTTTGGTCACGAATT</canonical_amplicon>
		<polymorphic_amplicon>GATAACGTGCTCGCTCTATTGTTAAATTTCAATAGCGTTCTAGTGATTATGTCAAAAAAAAATCGAATTGTCTGAACCAACAACATAAAAAATCAGATTTTTCCAAAAAAATTATTTTAATGGTCATATTTATTTATTTTTGGTTTTCTAATTTTKACTGAAAACCCGTCGTTTTGCAGGTGATCAAATATATACAGAAAAGATATAATTGAGTTTATTTTGGTCACGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23385</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>36070</contig_pos>
        <strand></strand>
        <context>CTAAAATAAT[G/T]Cctctcaact</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTATTGACACATAAGAATCGTCTGGCTATCTTTAGAATTCTAAAATAAT</left_flank>
        <right_flank>CCTCTCAACTTTGAGCTCAATTATCTGGGTTACTGTAAGAGATATTAAAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGTACAAAAAATATTGCAGATGATAGAGAAATGATCAAAAAAGAGTTTCCCGCTTGAAAAAATCCTGGAAAATGATTTTTAAAGCTCGAAAAATGCACGTTTTTGGTCAAAATTTAGTACTGAAAACACTTTGAGAGCCCATATTTTTGTTCCTATTAGGGTTATGACCGAGATATTGCTGAATTCGTATTCAGCATGTTCGAAAGTACCTTTGTACAAGTTTTGAGCTAATTCTCAACGCCCCTCTGAAAACACTTCCCTTGTGAGGAAATTTAGATTTTCTGAGGAACCAAAAATTAGACTAGAAGACAACATTTTCAGATTTTACCCTCTGAAGCTCCGCCCTTTTTTACAGTACAGGGTTCTTCATACGTCATCATGGAACATGTACAGACAATACACACAAATTATAAATAAGAGATTTCACACTTCAGATAATTGACATTTTTATTGACACATAAGAATCGTCTGGCTATCTTTAGAATTCTAAAATAATGCCTCTCAACTTTGAGCTCAATTATCTGGGTTACTGTAAGAGATATTAAAAAGTTGTCAACTAATAAAATGTTTGCCATAATATCAGCAACATTTTATCAGTTGATCACTTTTTAATATATCTTGCGGTAACCGAGATATATGAGAGAAAAGTTGAGAACATAAAAAGCCCGCACCATTTTATTTATAGGGAATTTTGACCCTAATTATTTCATTAGCTATAAGAGATATCAAGAAGTTGTTAGCTGATGAAATATTGATGCTTTTATGATAAACATTTTATTAGTTGACTACTTTTTGATATGTCTCACAGTAACCGAGATAAATTAGCTCAAAGTTAAAAGCTCGGAGGGTCAACGTGTCTCCTGTTGTTTAAAAAAATGCTCGCAACTTTTCCGATTTTTGAGATAGAGACTTGATTTTTGCACCAATTGAAAGATCATGATTTTTTGACTAACCTCAAAAAATAAATATAAATTTATTAGGATGCTCAGAAGTGCTT</canonical>
            <polymorphic>AATTGTACAAAAAATATTGCAGATGATAGAGAAATGATCAAAAAAGAGTTTCCCGCTTGAAAAAATCCTGGAAAATGATTTTTAAAGCTCGAAAAATGCACGTTTTTGGTCAAAATTTAGTACTGAAAACACTTTGAGAGCCCATATTTTTGTTCCTATTAGGGTTATGACCGAGATATTGCTGAATTCGTATTCAGCATGTTCGAAAGTACCTTTGTACAAGTTTTGAGCTAATTCTCAACGCCCCTCTGAAAACACTTCCCTTGTGAGGAAATTTAGATTTTCTGAGGAACCAAAAATTAGACTAGAAGACAACATTTTCAGATTTTACCCTCTGAAGCTCCGCCCTTTTTTACAGTACAGGGTTCTTCATACGTCATCATGGAACATGTACAGACAATACACACAAATTATAAATAAGAGATTTCACACTTCAGATAATTGACATTTTTATTGACACATAAGAATCGTCTGGCTATCTTTAGAATTCTAAAATAATKCCTCTCAACTTTGAGCTCAATTATCTGGGTTACTGTAAGAGATATTAAAAAGTTGTCAACTAATAAAATGTTTGCCATAATATCAGCAACATTTTATCAGTTGATCACTTTTTAATATATCTTGCGGTAACCGAGATATATGAGAGAAAAGTTGAGAACATAAAAAGCCCGCACCATTTTATTTATAGGGAATTTTGACCCTAATTATTTCATTAGCTATAAGAGATATCAAGAAGTTGTTAGCTGATGAAATATTGATGCTTTTATGATAAACATTTTATTAGTTGACTACTTTTTGATATGTCTCACAGTAACCGAGATAAATTAGCTCAAAGTTAAAAGCTCGGAGGGTCAACGTGTCTCCTGTTGTTTAAAAAAATGCTCGCAACTTTTCCGATTTTTGAGATAGAGACTTGATTTTTGCACCAATTGAAAGATCATGATTTTTTGACTAACCTCAAAAAATAAATATAAATTTATTAGGATGCTCAGAAGTGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATAATTGACATTTTTATTGACACA</pcr_primer_p1>
		<pcr_primer_p2>CTATCTCAAAAATCGGAAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>473</pcr_amplicon_size>
		<canonical_amplicon>GATAATTGACATTTTTATTGACACATAAGAATCGTCTGGCTATCTTTAGAATTCTAAAATAATGCCTCTCAACTTTGAGCTCAATTATCTGGGTTACTGTAAGAGATATTAAAAAGTTGTCAACTAATAAAATGTTTGCCATAATATCAGCAACATTTTATCAGTTGATCACTTTTTAATATATCTTGCGGTAACCGAGATATATGAGAGAAAAGTTGAGAACATAAAAAGCCCGCACCATTTTATTTATAGGGAATTTTGACCCTAATTATTTCATTAGCTATAAGAGATATCAAGAAGTTGTTAGCTGATGAAATATTGATGCTTTTATGATAAACATTTTATTAGTTGACTACTTTTTGATATGTCTCACAGTAACCGAGATAAATTAGCTCAAAGTTAAAAGCTCGGAGGGTCAACGTGTCTCCTGTTGTTTAAAAAAATGCTCGCAACTTTTCCGATTTTTGAGATAG</canonical_amplicon>
		<polymorphic_amplicon>GATAATTGACATTTTTATTGACACATAAGAATCGTCTGGCTATCTTTAGAATTCTAAAATAATKCCTCTCAACTTTGAGCTCAATTATCTGGGTTACTGTAAGAGATATTAAAAAGTTGTCAACTAATAAAATGTTTGCCATAATATCAGCAACATTTTATCAGTTGATCACTTTTTAATATATCTTGCGGTAACCGAGATATATGAGAGAAAAGTTGAGAACATAAAAAGCCCGCACCATTTTATTTATAGGGAATTTTGACCCTAATTATTTCATTAGCTATAAGAGATATCAAGAAGTTGTTAGCTGATGAAATATTGATGCTTTTATGATAAACATTTTATTAGTTGACTACTTTTTGATATGTCTCACAGTAACCGAGATAAATTAGCTCAAAGTTAAAAGCTCGGAGGGTCAACGTGTCTCCTGTTGTTTAAAAAAATGCTCGCAACTTTTCCGATTTTTGAGATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23386</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>53702</contig_pos>
        <strand>+</strand>
        <context>TCCGAAAGAA[A/G]TCRATCGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTTTGGCGAAGGTCAAAGTTCATCAAAAATCGGCAATTCCGAAAGAA</left_flank>
        <right_flank>TCGATCGATTTCGTGCAGTTCTGGTGAGCTTTTTTGAAGCTTTGGTGAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTATTGTTTTTGGTGTCTAATTTTTTCTAGAAAAAAAGAAAAAAAAAAGCGAAAACTGGTACCGATNNNNNNNNNNNNGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTCGCCGATTCATTAATGCAGCTGGCAAGACAGAAACACCAAAGTTATTTTCGGGCATTTTTAGGCCAGTTTTAAGTTTTTTCGGTTCCAATTAGCTGAAATTCGAGAAAAATTGATCAAAATTCACTGAAAAATCCCAATTTTTCCAGAACACAAACTAGCAAAATCGCATCTCTTCGACAATCCGACACCACAACCAACTCGCGATATTCCAGATGTTTTAAATTTTGGCGAAGGTCAAAGTTCATCAAAAATCGGCAATTCCGAAAGAAGTCGATCGATTTCGTGCAGTTCTGGTGAGCTTTTTTGAAGCTTTGGTGAGCATTTTTGACTCAAAAACTGTCTGAAAATAGCTGAAAAAACAACCGCCAAATAATTTCAGATTCCTCATCTGACTTTCCCATGACAATGGACCAATTCTTCGCGTCGAGACCCACAACGCCTGTCAACCGTGAAACGCCGGACAAGTTCGATTCGATGGGTAAAAATTGAAAATTTCGATTTTGCATTACTTTGAAAATCCCATTTTCAGTCGGCCAACCACCTAGCCTATTCAACAATTCCAAATCGATGCCCGCCAATCGCTTCCTCACGTCGTCAGGACCCAAAAAGGCGTTTCCAAATGTGAAGAAATCGTCAAAAAGCCATAAATTTGCTCTAAAACGTCCGACGCCGACGAGAATTTTGCCCCCGCGAACGGCTAGAAACGCCGGAATTTCCAAATTCGGAGTGGACTCAGATTTTCATTAGAATTCTAATTATTTTGTTTTTTG</canonical>
            <polymorphic>ATTCTATTGTTTTTGGTGTCTAATTTTTTCTAGAAAAAAAGAAAAAAAAAAGCGAAAACTGGTACCGATNNNNNNNNNNNNGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTCGCCGATTCATTAATGCAGCTGGCAAGACAGAAACACCAAAGTTATTTTCGGGCATTTTTAGGCCAGTTTTAAGTTTTTTCGGTTCCAATTAGCTGAAATTCGAGAAAAATTGATCAAAATTCACTGAAAAATCCCAATTTTTCCAGAACACAAACTAGCAAAATCGCATCTCTTCGACAATCCGACACCACAACCAACTCGCGATATTCCAGATGTTTTAAATTTTGGCGAAGGTCAAAGTTCATCAAAAATCGGCAATTCCGAAAGAARTCGATCGATTTCGTGCAGTTCTGGTGAGCTTTTTTGAAGCTTTGGTGAGCATTTTTGACTCAAAAACTGTCTGAAAATAGCTGAAAAAACAACCGCCAAATAATTTCAGATTCCTCATCTGACTTTCCCATGACAATGGACCAATTCTTCGCGTCGAGACCCACAACGCCTGTCAACCGTGAAACGCCGGACAAGTTCGATTCGATGGGTAAAAATTGAAAATTTCGATTTTGCATTACTTTGAAAATCCCATTTTCAGTCGGCCAACCACCTAGCCTATTCAACAATTCCAAATCGATGCCCGCCAATCGCTTCCTCACGTCGTCAGGACCCAAAAAGGCGTTTCCAAATGTGAAGAAATCGTCAAAAAGCCATAAATTTGCTCTAAAACGTCCGACGCCGACGAGAATTTTGCCCCCGCGAACGGCTAGAAACGCCGGAATTTCCAAATTCGGAGTGGACTCAGATTTTCATTAGAATTCTAATTATTTTGTTTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAACACAAACTAGCAAAATC</pcr_primer_p1>
		<pcr_primer_p2>GTCAGATGAGGAATCTGAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGAACACAAACTAGCAAAATCGCATCTCTTCGACAATCCGACACCACAACCAACTCGCGATATTCCAGATGTTTTAAATTTTGGCGAAGGTCAAAGTTCATCAAAAATCGGCAATTCCGAAAGAAGTCGATCGATTTCGTGCAGTTCTGGTGAGCTTTTTTGAAGCTTTGGTGAGCATTTTTGACTCAAAAACTGTCTGAAAATAGCTGAAAAAACAACCGCCAAATAATTTCAGATTCCTCATCTGAC</canonical_amplicon>
		<polymorphic_amplicon>CAGAACACAAACTAGCAAAATCGCATCTCTTCGACAATCCGACACCACAACCAACTCGCGATATTCCAGATGTTTTAAATTTTGGCGAAGGTCAAAGTTCATCAAAAATCGGCAATTCCGAAAGAARTCGATCGATTTCGTGCAGTTCTGGTGAGCTTTTTTGAAGCTTTGGTGAGCATTTTTGACTCAAAAACTGTCTGAAAATAGCTGAAAAAACAACCGCCAAATAATTTCAGATTCCTCATCTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23387</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>53705</contig_pos>
        <strand>+</strand>
        <context>GAAAGAARTC[A/G]ATCGATTTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGGCGAAGGTCAAAGTTCATCAAAAATCGGCAATTCCGAAAGAAGTC</left_flank>
        <right_flank>ATCGATTTCGTGCAGTTCTGGTGAGCTTTTTTGAAGCTTTGGTGAGCATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATTGTTTTTGGTGTCTAATTTTTTCTAGAAAAAAAGAAAAAAAAAAGCGAAAACTGGTACCGATNNNNNNNNNNNNGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTCGCCGATTCATTAATGCAGCTGGCAAGACAGAAACACCAAAGTTATTTTCGGGCATTTTTAGGCCAGTTTTAAGTTTTTTCGGTTCCAATTAGCTGAAATTCGAGAAAAATTGATCAAAATTCACTGAAAAATCCCAATTTTTCCAGAACACAAACTAGCAAAATCGCATCTCTTCGACAATCCGACACCACAACCAACTCGCGATATTCCAGATGTTTTAAATTTTGGCGAAGGTCAAAGTTCATCAAAAATCGGCAATTCCGAAAGAAGTCGATCGATTTCGTGCAGTTCTGGTGAGCTTTTTTGAAGCTTTGGTGAGCATTTTTGACTCAAAAACTGTCTGAAAATAGCTGAAAAAACAACCGCCAAATAATTTCAGATTCCTCATCTGACTTTCCCATGACAATGGACCAATTCTTCGCGTCGAGACCCACAACGCCTGTCAACCGTGAAACGCCGGACAAGTTCGATTCGATGGGTAAAAATTGAAAATTTCGATTTTGCATTACTTTGAAAATCCCATTTTCAGTCGGCCAACCACCTAGCCTATTCAACAATTCCAAATCGATGCCCGCCAATCGCTTCCTCACGTCGTCAGGACCCAAAAAGGCGTTTCCAAATGTGAAGAAATCGTCAAAAAGCCATAAATTTGCTCTAAAACGTCCGACGCCGACGAGAATTTTGCCCCCGCGAACGGCTAGAAACGCCGGAATTTCCAAATTCGGAGTGGACTCAGATTTTCATTAGAATTCTAATTATTTTGTTTTTTGTTT</canonical>
            <polymorphic>CTATTGTTTTTGGTGTCTAATTTTTTCTAGAAAAAAAGAAAAAAAAAAGCGAAAACTGGTACCGATNNNNNNNNNNNNGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTCGCCGATTCATTAATGCAGCTGGCAAGACAGAAACACCAAAGTTATTTTCGGGCATTTTTAGGCCAGTTTTAAGTTTTTTCGGTTCCAATTAGCTGAAATTCGAGAAAAATTGATCAAAATTCACTGAAAAATCCCAATTTTTCCAGAACACAAACTAGCAAAATCGCATCTCTTCGACAATCCGACACCACAACCAACTCGCGATATTCCAGATGTTTTAAATTTTGGCGAAGGTCAAAGTTCATCAAAAATCGGCAATTCCGAAAGAAGTCRATCGATTTCGTGCAGTTCTGGTGAGCTTTTTTGAAGCTTTGGTGAGCATTTTTGACTCAAAAACTGTCTGAAAATAGCTGAAAAAACAACCGCCAAATAATTTCAGATTCCTCATCTGACTTTCCCATGACAATGGACCAATTCTTCGCGTCGAGACCCACAACGCCTGTCAACCGTGAAACGCCGGACAAGTTCGATTCGATGGGTAAAAATTGAAAATTTCGATTTTGCATTACTTTGAAAATCCCATTTTCAGTCGGCCAACCACCTAGCCTATTCAACAATTCCAAATCGATGCCCGCCAATCGCTTCCTCACGTCGTCAGGACCCAAAAAGGCGTTTCCAAATGTGAAGAAATCGTCAAAAAGCCATAAATTTGCTCTAAAACGTCCGACGCCGACGAGAATTTTGCCCCCGCGAACGGCTAGAAACGCCGGAATTTCCAAATTCGGAGTGGACTCAGATTTTCATTAGAATTCTAATTATTTTGTTTTTTGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>501 338 161</canonical_bands>
                <polymorphic_bands>662 338</polymorphic_bands>
            </assay>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>498 347 155</canonical_bands>
                <polymorphic_bands>845 155</polymorphic_bands>
            </assay>
            <assay>
                <site>CGATCG</site>
                <isoschizomers>
                    <enzyme>BspCI</enzyme>
                    <enzyme>Ple19I</enzyme>
                    <enzyme>PvuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>328 207 149 97 74 70 43 23 5 4</canonical_bands>
                <polymorphic_bands>328 207 149 101 74 70 43 23 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAACACAAACTAGCAAAATC</pcr_primer_p1>
		<pcr_primer_p2>GTCAGATGAGGAATCTGAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGAACACAAACTAGCAAAATCGCATCTCTTCGACAATCCGACACCACAACCAACTCGCGATATTCCAGATGTTTTAAATTTTGGCGAAGGTCAAAGTTCATCAAAAATCGGCAATTCCGAAAGAAGTCGATCGATTTCGTGCAGTTCTGGTGAGCTTTTTTGAAGCTTTGGTGAGCATTTTTGACTCAAAAACTGTCTGAAAATAGCTGAAAAAACAACCGCCAAATAATTTCAGATTCCTCATCTGAC</canonical_amplicon>
		<polymorphic_amplicon>CAGAACACAAACTAGCAAAATCGCATCTCTTCGACAATCCGACACCACAACCAACTCGCGATATTCCAGATGTTTTAAATTTTGGCGAAGGTCAAAGTTCATCAAAAATCGGCAATTCCGAAAGAAGTCRATCGATTTCGTGCAGTTCTGGTGAGCTTTTTTGAAGCTTTGGTGAGCATTTTTGACTCAAAAACTGTCTGAAAATAGCTGAAAAAACAACCGCCAAATAATTTCAGATTCCTCATCTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23388</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>58995</contig_pos>
        <strand></strand>
        <context>gaccaaaatt[C/T]gcgaaaagta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATT</left_flank>
        <right_flank>GCGAAAAGTAGCTCAAAATTCATGAAAAACGACCTAAAATCGATGAAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTGAATTTTATAACTTTTCCGAATCCCGGAATTTCTAGATTTCCGATTTTCAATTTTTTGAAAATTTTGGTTTTTTGGGATTTCCGCACTTTCGAATTTTCTAAAAAAGTCTCGAATTTTAAAATGTTTTGAATTTCCGAATTTCTGAATTTTCCAAAATTTCCAAATACTCTCCAGAGTCATCAAACTGTACATGGGCGAATGTTTCACGGAGCTCGAAACCAATGGAGTCGATGTATTCGGTGGATGGGAAGGAGCCGATGAGCAAGGAGAACCACTGGATACGGCTGATCCAGTGGTGATCGCGCGATATTGGTTGATCCGATGGATCAATAATATCGCATCGGCCACACATCAACCAGCTAATAATGTGCCACAATCGGCACAATCCTCGCTGATTCTATATCGAAATGCACTGTTTTCGTCGCATAAGGTGGGGAATTCGATGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATTCGCGAAAAGTAGCTCAAAATTCATGAAAAACGACCTAAAATCGATGAAAAATGACCTAAAATTTAAGAAAAATGAACCGAAATCCGATTAAAATTGCTCAAATTTCATGAAAAATGGTCTAAAAATTCTTGAAAATTGACCAAAAAGACCAAATGGGTCCGAAATTTATGAAAAAAAAACCAAAAAATCATGAAAAATACTCAAAAATCTATAAAAAATGGTCCAAATTTCATGAAAAATGGCCTAAAGTTCATAAAAAATGACCAAAAATTTATGAAAAATTGCCTATAATTCATGAAAAATGGTCCAAATACATGAAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAATAATGGTCCAAAATTCATGAAAAATGTCCCAAAATTCATGAAAAATGGTCCAAAACTCATGACAAATAGTCCAAAATTCAAATTTTTGCAGGCCACCAACGTCGCTCTGACGCTAATGCGTGAAGCGATGAAACTTCCGC</canonical>
            <polymorphic>TTTCTGAATTTTATAACTTTTCCGAATCCCGGAATTTCTAGATTTCCGATTTTCAATTTTTTGAAAATTTTGGTTTTTTGGGATTTCCGCACTTTCGAATTTTCTAAAAAAGTCTCGAATTTTAAAATGTTTTGAATTTCCGAATTTCTGAATTTTCCAAAATTTCCAAATACTCTCCAGAGTCATCAAACTGTACATGGGCGAATGTTTCACGGAGCTCGAAACCAATGGAGTCGATGTATTCGGTGGATGGGAAGGAGCCGATGAGCAAGGAGAACCACTGGATACGGCTGATCCAGTGGTGATCGCGCGATATTGGTTGATCCGATGGATCAATAATATCGCATCGGCCACACATCAACCAGCTAATAATGTGCCACAATCGGCACAATCCTCGCTGATTCTATATCGAAATGCACTGTTTTCGTCGCATAAGGTGGGGAATTCGATGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATTYGCGAAAAGTAGCTCAAAATTCATGAAAAACGACCTAAAATCGATGAAAAATGACCTAAAATTTAAGAAAAATGAACCGAAATCCGATTAAAATTGCTCAAATTTCATGAAAAATGGTCTAAAAATTCTTGAAAATTGACCAAAAAGACCAAATGGGTCCGAAATTTATGAAAAAAAAACCAAAAAATCATGAAAAATACTCAAAAATCTATAAAAAATGGTCCAAATTTCATGAAAAATGGCCTAAAGTTCATAAAAAATGACCAAAAATTTATGAAAAATTGCCTATAATTCATGAAAAATGGTCCAAATACATGAAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAATAATGGTCCAAAATTCATGAAAAATGTCCCAAAATTCATGAAAAATGGTCCAAAACTCATGACAAATAGTCCAAAATTCAAATTTTTGCAGGCCACCAACGTCGCTCTGACGCTAATGCGTGAAGCGATGAAACTTCCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 308 191 2</canonical_bands>
                <polymorphic_bands>690 308 2</polymorphic_bands>
            </assay>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>282 63 62 60 43 42 42 41 39 33 32 32 26 23 21 21 21 21 21 20 17 10 8 8 6 6</canonical_bands>
                <polymorphic_bands>282 63 62 60 43 42 42 42 41 39 33 32 32 26 23 21 21 21 20 17 10 8 8 6 6</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGCGA</site>
                <isoschizomers>
                    <enzyme>Bsp68I</enzyme>
                    <enzyme>NruI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>323 84 82 76 63 63 61 42 41 38 22 21 21 21 21 21</canonical_bands>
                <polymorphic_bands>344 84 82 76 63 63 61 42 41 38 22 21 21 21 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTATATCGAAATGCACTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGACCACTTTATGAGTCACATT</pcr_primer_p2>
		<pcr_amplicon_size>632</pcr_amplicon_size>
		<canonical_amplicon>TCTATATCGAAATGCACTGTTTTCGTCGCATAAGGTGGGGAATTCGATGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATTCGCGAAAAGTAGCTCAAAATTCA</canonical_amplicon>
		<polymorphic_amplicon>TCTATATCGAAATGCACTGTTTTCGTCGCATAAGGTGGGGAATTCGATGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATTYGCGAAAAGTAGCTCAAAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23389</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>59194</contig_pos>
        <strand></strand>
        <context>atgaaaaata[C/G]tcaaaaatct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAAATGGGTCCGAAATTTATGAAAAAAAAACCAAAAAATCATGAAAAATA</left_flank>
        <right_flank>TCAAAAATCTATAAAAAATGGTCCAAATTTCATGAAAAATGGCCTAAAGT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCGAATGTTTCACGGAGCTCGAAACCAATGGAGTCGATGTATTCGGTGGATGGGAAGGAGCCGATGAGCAAGGAGAACCACTGGATACGGCTGATCCAGTGGTGATCGCGCGATATTGGTTGATCCGATGGATCAATAATATCGCATCGGCCACACATCAACCAGCTAATAATGTGCCACAATCGGCACAATCCTCGCTGATTCTATATCGAAATGCACTGTTTTCGTCGCATAAGGTGGGGAATTCGATGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATTCGCGAAAAGTAGCTCAAAATTCATGAAAAACGACCTAAAATCGATGAAAAATGACCTAAAATTTAAGAAAAATGAACCGAAATCCGATTAAAATTGCTCAAATTTCATGAAAAATGGTCTAAAAATTCTTGAAAATTGACCAAAAAGACCAAATGGGTCCGAAATTTATGAAAAAAAAACCAAAAAATCATGAAAAATACTCAAAAATCTATAAAAAATGGTCCAAATTTCATGAAAAATGGCCTAAAGTTCATAAAAAATGACCAAAAATTTATGAAAAATTGCCTATAATTCATGAAAAATGGTCCAAATACATGAAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAATAATGGTCCAAAATTCATGAAAAATGTCCCAAAATTCATGAAAAATGGTCCAAAACTCATGACAAATAGTCCAAAATTCAAATTTTTGCAGGCCACCAACGTCGCTCTGACGCTAATGCGTGAAGCGATGAAACTTCCGCTAGCATGCTCGAATGTGACTCATAAAGTGGTCAACGTGCTCTCCGCCTGGCTTCTACAGTACGAAATTCCACCGTTCGTCGCGTCTGGAGAGGTCTCGATAGAGCGATGTTCACTTCTGCTGGCCAATATTCTACTCTCTTTCTTTCATAGTCCCTATCTGTCGCAGTGTGGGGAGAGGTAGGTCAAAAAACGAAAAAA</canonical>
            <polymorphic>GGCGAATGTTTCACGGAGCTCGAAACCAATGGAGTCGATGTATTCGGTGGATGGGAAGGAGCCGATGAGCAAGGAGAACCACTGGATACGGCTGATCCAGTGGTGATCGCGCGATATTGGTTGATCCGATGGATCAATAATATCGCATCGGCCACACATCAACCAGCTAATAATGTGCCACAATCGGCACAATCCTCGCTGATTCTATATCGAAATGCACTGTTTTCGTCGCATAAGGTGGGGAATTCGATGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATTCGCGAAAAGTAGCTCAAAATTCATGAAAAACGACCTAAAATCGATGAAAAATGACCTAAAATTTAAGAAAAATGAACCGAAATCCGATTAAAATTGCTCAAATTTCATGAAAAATGGTCTAAAAATTCTTGAAAATTGACCAAAAAGACCAAATGGGTCCGAAATTTATGAAAAAAAAACCAAAAAATCATGAAAAATASTCAAAAATCTATAAAAAATGGTCCAAATTTCATGAAAAATGGCCTAAAGTTCATAAAAAATGACCAAAAATTTATGAAAAATTGCCTATAATTCATGAAAAATGGTCCAAATACATGAAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAATAATGGTCCAAAATTCATGAAAAATGTCCCAAAATTCATGAAAAATGGTCCAAAACTCATGACAAATAGTCCAAAATTCAAATTTTTGCAGGCCACCAACGTCGCTCTGACGCTAATGCGTGAAGCGATGAAACTTCCGCTAGCATGCTCGAATGTGACTCATAAAGTGGTCAACGTGCTCTCCGCCTGGCTTCTACAGTACGAAATTCCACCGTTCGTCGCGTCTGGAGAGGTCTCGATAGAGCGATGTTCACTTCTGCTGGCCAATATTCTACTCTCTTTCTTTCATAGTCCCTATCTGTCGCAGTGTGGGGAGAGGTAGGTCAAAAAACGAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATATCGAAATGCACTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGACCACTTTATGAGTCACATT</pcr_primer_p2>
		<pcr_amplicon_size>632</pcr_amplicon_size>
		<canonical_amplicon>TCTATATCGAAATGCACTGTTTTCGTCGCATAAGGTGGGGAATTCGATGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATTCGCGAAAAGTAGCTCAAAATTCATGAAAAACGACCTAAAATCGATGAAAAATGACCTAAAATTTAAGAAAAATGAACCGAAATCCGATTAAAATTGCTCAAATTTCATGAAAAATGGTCTAAAAATTCTTGAAAATTGACCAAAAAGACCAAATGGGTCCGAAATTTATGAAAAAAAAACCAAAAAATCATGAAAAATACTCAAAAATCTATAAAAAATGGTCCAAATTTCATGAAAAATGGCCTAAAGTTCATAAAAAATGACCAAAAATTTATGAAAAATTGCCTATAATTCATGAAAAATGGTCCAAATACATGAAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAATAATGGTCCAAAATTCATGAAAAATGTCCCAAAATTCATGAAAAATGGTCCAAAACTCATGACAAATAGTCCAAAATTCAAATTTTTGCAGGCCACCAACGTCGCTCTGACGCTAATGCGTGAAGCGATGAAACTTCCGCTAGCATGCTCGAATGTGACTCATAAAGTGGTCAA</canonical_amplicon>
		<polymorphic_amplicon>TCTATATCGAAATGCACTGTTTTCGTCGCATAAGGTGGGGAATTCGATGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATTCGCGAAAAGTAGCTCAAAATTCATGAAAAACGACCTAAAATCGATGAAAAATGACCTAAAATTTAAGAAAAATGAACCGAAATCCGATTAAAATTGCTCAAATTTCATGAAAAATGGTCTAAAAATTCTTGAAAATTGACCAAAAAGACCAAATGGGTCCGAAATTTATGAAAAAAAAACCAAAAAATCATGAAAAATASTCAAAAATCTATAAAAAATGGTCCAAATTTCATGAAAAATGGCCTAAAGTTCATAAAAAATGACCAAAAATTTATGAAAAATTGCCTATAATTCATGAAAAATGGTCCAAATACATGAAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAATAATGGTCCAAAATTCATGAAAAATGTCCCAAAATTCATGAAAAATGGTCCAAAACTCATGACAAATAGTCCAAAATTCAAATTTTTGCAGGCCACCAACGTCGCTCTGACGCTAATGCGTGAAGCGATGAAACTTCCGCTAGCATGCTCGAATGTGACTCATAAAGTGGTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23390</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>59207</contig_pos>
        <strand></strand>
        <context>aaaaatctat[A/G]aaaaatggtc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTATGAAAAAAAAACCAAAAAATCATGAAAAATACTCAAAAATCTAT</left_flank>
        <right_flank>AAAAATGGTCCAAATTTCATGAAAAATGGCCTAAAGTTCATAAAAAATGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGAGCTCGAAACCAATGGAGTCGATGTATTCGGTGGATGGGAAGGAGCCGATGAGCAAGGAGAACCACTGGATACGGCTGATCCAGTGGTGATCGCGCGATATTGGTTGATCCGATGGATCAATAATATCGCATCGGCCACACATCAACCAGCTAATAATGTGCCACAATCGGCACAATCCTCGCTGATTCTATATCGAAATGCACTGTTTTCGTCGCATAAGGTGGGGAATTCGATGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATTCGCGAAAAGTAGCTCAAAATTCATGAAAAACGACCTAAAATCGATGAAAAATGACCTAAAATTTAAGAAAAATGAACCGAAATCCGATTAAAATTGCTCAAATTTCATGAAAAATGGTCTAAAAATTCTTGAAAATTGACCAAAAAGACCAAATGGGTCCGAAATTTATGAAAAAAAAACCAAAAAATCATGAAAAATACTCAAAAATCTATAAAAAATGGTCCAAATTTCATGAAAAATGGCCTAAAGTTCATAAAAAATGACCAAAAATTTATGAAAAATTGCCTATAATTCATGAAAAATGGTCCAAATACATGAAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAATAATGGTCCAAAATTCATGAAAAATGTCCCAAAATTCATGAAAAATGGTCCAAAACTCATGACAAATAGTCCAAAATTCAAATTTTTGCAGGCCACCAACGTCGCTCTGACGCTAATGCGTGAAGCGATGAAACTTCCGCTAGCATGCTCGAATGTGACTCATAAAGTGGTCAACGTGCTCTCCGCCTGGCTTCTACAGTACGAAATTCCACCGTTCGTCGCGTCTGGAGAGGTCTCGATAGAGCGATGTTCACTTCTGCTGGCCAATATTCTACTCTCTTTCTTTCATAGTCCCTATCTGTCGCAGTGTGGGGAGAGGTAGGTCAAAAAACGAAAAAAAATCTGTGTAGTC</canonical>
            <polymorphic>CGGAGCTCGAAACCAATGGAGTCGATGTATTCGGTGGATGGGAAGGAGCCGATGAGCAAGGAGAACCACTGGATACGGCTGATCCAGTGGTGATCGCGCGATATTGGTTGATCCGATGGATCAATAATATCGCATCGGCCACACATCAACCAGCTAATAATGTGCCACAATCGGCACAATCCTCGCTGATTCTATATCGAAATGCACTGTTTTCGTCGCATAAGGTGGGGAATTCGATGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATTCGCGAAAAGTAGCTCAAAATTCATGAAAAACGACCTAAAATCGATGAAAAATGACCTAAAATTTAAGAAAAATGAACCGAAATCCGATTAAAATTGCTCAAATTTCATGAAAAATGGTCTAAAAATTCTTGAAAATTGACCAAAAAGACCAAATGGGTCCGAAATTTATGAAAAAAAAACCAAAAAATCATGAAAAATACTCAAAAATCTATRAAAAATGGTCCAAATTTCATGAAAAATGGCCTAAAGTTCATAAAAAATGACCAAAAATTTATGAAAAATTGCCTATAATTCATGAAAAATGGTCCAAATACATGAAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAATAATGGTCCAAAATTCATGAAAAATGTCCCAAAATTCATGAAAAATGGTCCAAAACTCATGACAAATAGTCCAAAATTCAAATTTTTGCAGGCCACCAACGTCGCTCTGACGCTAATGCGTGAAGCGATGAAACTTCCGCTAGCATGCTCGAATGTGACTCATAAAGTGGTCAACGTGCTCTCCGCCTGGCTTCTACAGTACGAAATTCCACCGTTCGTCGCGTCTGGAGAGGTCTCGATAGAGCGATGTTCACTTCTGCTGGCCAATATTCTACTCTCTTTCTTTCATAGTCCCTATCTGTCGCAGTGTGGGGAGAGGTAGGTCAAAAAACGAAAAAAAATCTGTGTAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATATCGAAATGCACTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGACCACTTTATGAGTCACATT</pcr_primer_p2>
		<pcr_amplicon_size>632</pcr_amplicon_size>
		<canonical_amplicon>TCTATATCGAAATGCACTGTTTTCGTCGCATAAGGTGGGGAATTCGATGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATTCGCGAAAAGTAGCTCAAAATTCATGAAAAACGACCTAAAATCGATGAAAAATGACCTAAAATTTAAGAAAAATGAACCGAAATCCGATTAAAATTGCTCAAATTTCATGAAAAATGGTCTAAAAATTCTTGAAAATTGACCAAAAAGACCAAATGGGTCCGAAATTTATGAAAAAAAAACCAAAAAATCATGAAAAATACTCAAAAATCTATAAAAAATGGTCCAAATTTCATGAAAAATGGCCTAAAGTTCATAAAAAATGACCAAAAATTTATGAAAAATTGCCTATAATTCATGAAAAATGGTCCAAATACATGAAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAATAATGGTCCAAAATTCATGAAAAATGTCCCAAAATTCATGAAAAATGGTCCAAAACTCATGACAAATAGTCCAAAATTCAAATTTTTGCAGGCCACCAACGTCGCTCTGACGCTAATGCGTGAAGCGATGAAACTTCCGCTAGCATGCTCGAATGTGACTCATAAAGTGGTCAA</canonical_amplicon>
		<polymorphic_amplicon>TCTATATCGAAATGCACTGTTTTCGTCGCATAAGGTGGGGAATTCGATGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATTCGCGAAAAGTAGCTCAAAATTCATGAAAAACGACCTAAAATCGATGAAAAATGACCTAAAATTTAAGAAAAATGAACCGAAATCCGATTAAAATTGCTCAAATTTCATGAAAAATGGTCTAAAAATTCTTGAAAATTGACCAAAAAGACCAAATGGGTCCGAAATTTATGAAAAAAAAACCAAAAAATCATGAAAAATACTCAAAAATCTATRAAAAATGGTCCAAATTTCATGAAAAATGGCCTAAAGTTCATAAAAAATGACCAAAAATTTATGAAAAATTGCCTATAATTCATGAAAAATGGTCCAAATACATGAAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAATAATGGTCCAAAATTCATGAAAAATGTCCCAAAATTCATGAAAAATGGTCCAAAACTCATGACAAATAGTCCAAAATTCAAATTTTTGCAGGCCACCAACGTCGCTCTGACGCTAATGCGTGAAGCGATGAAACTTCCGCTAGCATGCTCGAATGTGACTCATAAAGTGGTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23391</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>59356</contig_pos>
        <strand></strand>
        <context>aattcatgaa[T/A]aatgkyccaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TACATGAAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAA</left_flank>
        <right_flank>AATGGTCCAAAATTCATGAAAAATGTCCCAAAATTCATGAAAAATGGTCC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGCTAATAATGTGCCACAATCGGCACAATCCTCGCTGATTCTATATCGAAATGCACTGTTTTCGTCGCATAAGGTGGGGAATTCGATGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATTCGCGAAAAGTAGCTCAAAATTCATGAAAAACGACCTAAAATCGATGAAAAATGACCTAAAATTTAAGAAAAATGAACCGAAATCCGATTAAAATTGCTCAAATTTCATGAAAAATGGTCTAAAAATTCTTGAAAATTGACCAAAAAGACCAAATGGGTCCGAAATTTATGAAAAAAAAACCAAAAAATCATGAAAAATACTCAAAAATCTATAAAAAATGGTCCAAATTTCATGAAAAATGGCCTAAAGTTCATAAAAAATGACCAAAAATTTATGAAAAATTGCCTATAATTCATGAAAAATGGTCCAAATACATGAAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAATAATGGTCCAAAATTCATGAAAAATGTCCCAAAATTCATGAAAAATGGTCCAAAACTCATGACAAATAGTCCAAAATTCAAATTTTTGCAGGCCACCAACGTCGCTCTGACGCTAATGCGTGAAGCGATGAAACTTCCGCTAGCATGCTCGAATGTGACTCATAAAGTGGTCAACGTGCTCTCCGCCTGGCTTCTACAGTACGAAATTCCACCGTTCGTCGCGTCTGGAGAGGTCTCGATAGAGCGATGTTCACTTCTGCTGGCCAATATTCTACTCTCTTTCTTTCATAGTCCCTATCTGTCGCAGTGTGGGGAGAGGTAGGTCAAAAAACGAAAAAAAATCTGTGTAGTCCTCGTGGACAAGATTTTTGGAAAATTTGAAAATTTTTTAAAATTTTTTTTTTGAAAAACTTGGTTTTTCTCTCATAAAAAAGTTCACAAGTAGTAGAAAACTCGAAAATTCAGCATTTTTGACTCTAACCCCTCCTGAAGTTTTTGCAG</canonical>
            <polymorphic>CCAGCTAATAATGTGCCACAATCGGCACAATCCTCGCTGATTCTATATCGAAATGCACTGTTTTCGTCGCATAAGGTGGGGAATTCGATGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATTCGCGAAAAGTAGCTCAAAATTCATGAAAAACGACCTAAAATCGATGAAAAATGACCTAAAATTTAAGAAAAATGAACCGAAATCCGATTAAAATTGCTCAAATTTCATGAAAAATGGTCTAAAAATTCTTGAAAATTGACCAAAAAGACCAAATGGGTCCGAAATTTATGAAAAAAAAACCAAAAAATCATGAAAAATACTCAAAAATCTATAAAAAATGGTCCAAATTTCATGAAAAATGGCCTAAAGTTCATAAAAAATGACCAAAAATTTATGAAAAATTGCCTATAATTCATGAAAAATGGTCCAAATACATGAAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAAWAATGGTCCAAAATTCATGAAAAATGTCCCAAAATTCATGAAAAATGGTCCAAAACTCATGACAAATAGTCCAAAATTCAAATTTTTGCAGGCCACCAACGTCGCTCTGACGCTAATGCGTGAAGCGATGAAACTTCCGCTAGCATGCTCGAATGTGACTCATAAAGTGGTCAACGTGCTCTCCGCCTGGCTTCTACAGTACGAAATTCCACCGTTCGTCGCGTCTGGAGAGGTCTCGATAGAGCGATGTTCACTTCTGCTGGCCAATATTCTACTCTCTTTCTTTCATAGTCCCTATCTGTCGCAGTGTGGGGAGAGGTAGGTCAAAAAACGAAAAAAAATCTGTGTAGTCCTCGTGGACAAGATTTTTGGAAAATTTGAAAATTTTTTAAAATTTTTTTTTTGAAAAACTTGGTTTTTCTCTCATAAAAAAGTTCACAAGTAGTAGAAAACTCGAAAATTCAGCATTTTTGACTCTAACCCCTCCTGAAGTTTTTGCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATATCGAAATGCACTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGACCACTTTATGAGTCACATT</pcr_primer_p2>
		<pcr_amplicon_size>632</pcr_amplicon_size>
		<canonical_amplicon>TCTATATCGAAATGCACTGTTTTCGTCGCATAAGGTGGGGAATTCGATGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATTCGCGAAAAGTAGCTCAAAATTCATGAAAAACGACCTAAAATCGATGAAAAATGACCTAAAATTTAAGAAAAATGAACCGAAATCCGATTAAAATTGCTCAAATTTCATGAAAAATGGTCTAAAAATTCTTGAAAATTGACCAAAAAGACCAAATGGGTCCGAAATTTATGAAAAAAAAACCAAAAAATCATGAAAAATACTCAAAAATCTATAAAAAATGGTCCAAATTTCATGAAAAATGGCCTAAAGTTCATAAAAAATGACCAAAAATTTATGAAAAATTGCCTATAATTCATGAAAAATGGTCCAAATACATGAAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAATAATGGTCCAAAATTCATGAAAAATGTCCCAAAATTCATGAAAAATGGTCCAAAACTCATGACAAATAGTCCAAAATTCAAATTTTTGCAGGCCACCAACGTCGCTCTGACGCTAATGCGTGAAGCGATGAAACTTCCGCTAGCATGCTCGAATGTGACTCATAAAGTGGTCAA</canonical_amplicon>
		<polymorphic_amplicon>TCTATATCGAAATGCACTGTTTTCGTCGCATAAGGTGGGGAATTCGATGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATTCGCGAAAAGTAGCTCAAAATTCATGAAAAACGACCTAAAATCGATGAAAAATGACCTAAAATTTAAGAAAAATGAACCGAAATCCGATTAAAATTGCTCAAATTTCATGAAAAATGGTCTAAAAATTCTTGAAAATTGACCAAAAAGACCAAATGGGTCCGAAATTTATGAAAAAAAAACCAAAAAATCATGAAAAATACTCAAAAATCTATAAAAAATGGTCCAAATTTCATGAAAAATGGCCTAAAGTTCATAAAAAATGACCAAAAATTTATGAAAAATTGCCTATAATTCATGAAAAATGGTCCAAATACATGAAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAAWAATGGTCCAAAATTCATGAAAAATGTCCCAAAATTCATGAAAAATGGTCCAAAACTCATGACAAATAGTCCAAAATTCAAATTTTTGCAGGCCACCAACGTCGCTCTGACGCTAATGCGTGAAGCGATGAAACTTCCGCTAGCATGCTCGAATGTGACTCATAAAGTGGTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23392</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>59361</contig_pos>
        <strand></strand>
        <context>atgaawaatg[G/T]yccaaaattc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAATAATG</left_flank>
        <right_flank>TCCAAAATTCATGAAAAATGTCCCAAAATTCATGAAAAATGGTCCAAAAC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATAATGTGCCACAATCGGCACAATCCTCGCTGATTCTATATCGAAATGCACTGTTTTCGTCGCATAAGGTGGGGAATTCGATGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATTCGCGAAAAGTAGCTCAAAATTCATGAAAAACGACCTAAAATCGATGAAAAATGACCTAAAATTTAAGAAAAATGAACCGAAATCCGATTAAAATTGCTCAAATTTCATGAAAAATGGTCTAAAAATTCTTGAAAATTGACCAAAAAGACCAAATGGGTCCGAAATTTATGAAAAAAAAACCAAAAAATCATGAAAAATACTCAAAAATCTATAAAAAATGGTCCAAATTTCATGAAAAATGGCCTAAAGTTCATAAAAAATGACCAAAAATTTATGAAAAATTGCCTATAATTCATGAAAAATGGTCCAAATACATGAAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAATAATGGTCCAAAATTCATGAAAAATGTCCCAAAATTCATGAAAAATGGTCCAAAACTCATGACAAATAGTCCAAAATTCAAATTTTTGCAGGCCACCAACGTCGCTCTGACGCTAATGCGTGAAGCGATGAAACTTCCGCTAGCATGCTCGAATGTGACTCATAAAGTGGTCAACGTGCTCTCCGCCTGGCTTCTACAGTACGAAATTCCACCGTTCGTCGCGTCTGGAGAGGTCTCGATAGAGCGATGTTCACTTCTGCTGGCCAATATTCTACTCTCTTTCTTTCATAGTCCCTATCTGTCGCAGTGTGGGGAGAGGTAGGTCAAAAAACGAAAAAAAATCTGTGTAGTCCTCGTGGACAAGATTTTTGGAAAATTTGAAAATTTTTTAAAATTTTTTTTTTGAAAAACTTGGTTTTTCTCTCATAAAAAAGTTCACAAGTAGTAGAAAACTCGAAAATTCAGCATTTTTGACTCTAACCCCTCCTGAAGTTTTTGCAGACACT</canonical>
            <polymorphic>TAATAATGTGCCACAATCGGCACAATCCTCGCTGATTCTATATCGAAATGCACTGTTTTCGTCGCATAAGGTGGGGAATTCGATGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATTCGCGAAAAGTAGCTCAAAATTCATGAAAAACGACCTAAAATCGATGAAAAATGACCTAAAATTTAAGAAAAATGAACCGAAATCCGATTAAAATTGCTCAAATTTCATGAAAAATGGTCTAAAAATTCTTGAAAATTGACCAAAAAGACCAAATGGGTCCGAAATTTATGAAAAAAAAACCAAAAAATCATGAAAAATACTCAAAAATCTATAAAAAATGGTCCAAATTTCATGAAAAATGGCCTAAAGTTCATAAAAAATGACCAAAAATTTATGAAAAATTGCCTATAATTCATGAAAAATGGTCCAAATACATGAAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAATAATGKTCCAAAATTCATGAAAAATGTCCCAAAATTCATGAAAAATGGTCCAAAACTCATGACAAATAGTCCAAAATTCAAATTTTTGCAGGCCACCAACGTCGCTCTGACGCTAATGCGTGAAGCGATGAAACTTCCGCTAGCATGCTCGAATGTGACTCATAAAGTGGTCAACGTGCTCTCCGCCTGGCTTCTACAGTACGAAATTCCACCGTTCGTCGCGTCTGGAGAGGTCTCGATAGAGCGATGTTCACTTCTGCTGGCCAATATTCTACTCTCTTTCTTTCATAGTCCCTATCTGTCGCAGTGTGGGGAGAGGTAGGTCAAAAAACGAAAAAAAATCTGTGTAGTCCTCGTGGACAAGATTTTTGGAAAATTTGAAAATTTTTTAAAATTTTTTTTTTGAAAAACTTGGTTTTTCTCTCATAAAAAAGTTCACAAGTAGTAGAAAACTCGAAAATTCAGCATTTTTGACTCTAACCCCTCCTGAAGTTTTTGCAGACACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>459 166 102 84 64 42 21 21 21 20</canonical_bands>
                <polymorphic_bands>459 166 102 84 64 63 21 21 20</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>459 166 102 84 64 42 21 21 21 20</canonical_bands>
                <polymorphic_bands>459 166 102 84 64 63 21 21 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTATATCGAAATGCACTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGACCACTTTATGAGTCACATT</pcr_primer_p2>
		<pcr_amplicon_size>632</pcr_amplicon_size>
		<canonical_amplicon>TCTATATCGAAATGCACTGTTTTCGTCGCATAAGGTGGGGAATTCGATGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATTCGCGAAAAGTAGCTCAAAATTCATGAAAAACGACCTAAAATCGATGAAAAATGACCTAAAATTTAAGAAAAATGAACCGAAATCCGATTAAAATTGCTCAAATTTCATGAAAAATGGTCTAAAAATTCTTGAAAATTGACCAAAAAGACCAAATGGGTCCGAAATTTATGAAAAAAAAACCAAAAAATCATGAAAAATACTCAAAAATCTATAAAAAATGGTCCAAATTTCATGAAAAATGGCCTAAAGTTCATAAAAAATGACCAAAAATTTATGAAAAATTGCCTATAATTCATGAAAAATGGTCCAAATACATGAAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAATAATGGTCCAAAATTCATGAAAAATGTCCCAAAATTCATGAAAAATGGTCCAAAACTCATGACAAATAGTCCAAAATTCAAATTTTTGCAGGCCACCAACGTCGCTCTGACGCTAATGCGTGAAGCGATGAAACTTCCGCTAGCATGCTCGAATGTGACTCATAAAGTGGTCAA</canonical_amplicon>
		<polymorphic_amplicon>TCTATATCGAAATGCACTGTTTTCGTCGCATAAGGTGGGGAATTCGATGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATTCGCGAAAAGTAGCTCAAAATTCATGAAAAACGACCTAAAATCGATGAAAAATGACCTAAAATTTAAGAAAAATGAACCGAAATCCGATTAAAATTGCTCAAATTTCATGAAAAATGGTCTAAAAATTCTTGAAAATTGACCAAAAAGACCAAATGGGTCCGAAATTTATGAAAAAAAAACCAAAAAATCATGAAAAATACTCAAAAATCTATAAAAAATGGTCCAAATTTCATGAAAAATGGCCTAAAGTTCATAAAAAATGACCAAAAATTTATGAAAAATTGCCTATAATTCATGAAAAATGGTCCAAATACATGAAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAATAATGKTCCAAAATTCATGAAAAATGTCCCAAAATTCATGAAAAATGGTCCAAAACTCATGACAAATAGTCCAAAATTCAAATTTTTGCAGGCCACCAACGTCGCTCTGACGCTAATGCGTGAAGCGATGAAACTTCCGCTAGCATGCTCGAATGTGACTCATAAAGTGGTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23393</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>59362</contig_pos>
        <strand></strand>
        <context>tgaawaatgk[T/C]ccaaaattca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAATAATGG</left_flank>
        <right_flank>CCAAAATTCATGAAAAATGTCCCAAAATTCATGAAAAATGGTCCAAAACT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAATGTGCCACAATCGGCACAATCCTCGCTGATTCTATATCGAAATGCACTGTTTTCGTCGCATAAGGTGGGGAATTCGATGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATTCGCGAAAAGTAGCTCAAAATTCATGAAAAACGACCTAAAATCGATGAAAAATGACCTAAAATTTAAGAAAAATGAACCGAAATCCGATTAAAATTGCTCAAATTTCATGAAAAATGGTCTAAAAATTCTTGAAAATTGACCAAAAAGACCAAATGGGTCCGAAATTTATGAAAAAAAAACCAAAAAATCATGAAAAATACTCAAAAATCTATAAAAAATGGTCCAAATTTCATGAAAAATGGCCTAAAGTTCATAAAAAATGACCAAAAATTTATGAAAAATTGCCTATAATTCATGAAAAATGGTCCAAATACATGAAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAATAATGGTCCAAAATTCATGAAAAATGTCCCAAAATTCATGAAAAATGGTCCAAAACTCATGACAAATAGTCCAAAATTCAAATTTTTGCAGGCCACCAACGTCGCTCTGACGCTAATGCGTGAAGCGATGAAACTTCCGCTAGCATGCTCGAATGTGACTCATAAAGTGGTCAACGTGCTCTCCGCCTGGCTTCTACAGTACGAAATTCCACCGTTCGTCGCGTCTGGAGAGGTCTCGATAGAGCGATGTTCACTTCTGCTGGCCAATATTCTACTCTCTTTCTTTCATAGTCCCTATCTGTCGCAGTGTGGGGAGAGGTAGGTCAAAAAACGAAAAAAAATCTGTGTAGTCCTCGTGGACAAGATTTTTGGAAAATTTGAAAATTTTTTAAAATTTTTTTTTTGAAAAACTTGGTTTTTCTCTCATAAAAAAGTTCACAAGTAGTAGAAAACTCGAAAATTCAGCATTTTTGACTCTAACCCCTCCTGAAGTTTTTGCAGACACTC</canonical>
            <polymorphic>AATAATGTGCCACAATCGGCACAATCCTCGCTGATTCTATATCGAAATGCACTGTTTTCGTCGCATAAGGTGGGGAATTCGATGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATTCGCGAAAAGTAGCTCAAAATTCATGAAAAACGACCTAAAATCGATGAAAAATGACCTAAAATTTAAGAAAAATGAACCGAAATCCGATTAAAATTGCTCAAATTTCATGAAAAATGGTCTAAAAATTCTTGAAAATTGACCAAAAAGACCAAATGGGTCCGAAATTTATGAAAAAAAAACCAAAAAATCATGAAAAATACTCAAAAATCTATAAAAAATGGTCCAAATTTCATGAAAAATGGCCTAAAGTTCATAAAAAATGACCAAAAATTTATGAAAAATTGCCTATAATTCATGAAAAATGGTCCAAATACATGAAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAATAATGGYCCAAAATTCATGAAAAATGTCCCAAAATTCATGAAAAATGGTCCAAAACTCATGACAAATAGTCCAAAATTCAAATTTTTGCAGGCCACCAACGTCGCTCTGACGCTAATGCGTGAAGCGATGAAACTTCCGCTAGCATGCTCGAATGTGACTCATAAAGTGGTCAACGTGCTCTCCGCCTGGCTTCTACAGTACGAAATTCCACCGTTCGTCGCGTCTGGAGAGGTCTCGATAGAGCGATGTTCACTTCTGCTGGCCAATATTCTACTCTCTTTCTTTCATAGTCCCTATCTGTCGCAGTGTGGGGAGAGGTAGGTCAAAAAACGAAAAAAAATCTGTGTAGTCCTCGTGGACAAGATTTTTGGAAAATTTGAAAATTTTTTAAAATTTTTTTTTTGAAAAACTTGGTTTTTCTCTCATAAAAAAGTTCACAAGTAGTAGAAAACTCGAAAATTCAGCATTTTTGACTCTAACCCCTCCTGAAGTTTTTGCAGACACTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>460 166 101 84 64 42 21 21 21 20</canonical_bands>
                <polymorphic_bands>460 166 101 84 64 63 21 21 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTATATCGAAATGCACTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGACCACTTTATGAGTCACATT</pcr_primer_p2>
		<pcr_amplicon_size>632</pcr_amplicon_size>
		<canonical_amplicon>TCTATATCGAAATGCACTGTTTTCGTCGCATAAGGTGGGGAATTCGATGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATTCGCGAAAAGTAGCTCAAAATTCATGAAAAACGACCTAAAATCGATGAAAAATGACCTAAAATTTAAGAAAAATGAACCGAAATCCGATTAAAATTGCTCAAATTTCATGAAAAATGGTCTAAAAATTCTTGAAAATTGACCAAAAAGACCAAATGGGTCCGAAATTTATGAAAAAAAAACCAAAAAATCATGAAAAATACTCAAAAATCTATAAAAAATGGTCCAAATTTCATGAAAAATGGCCTAAAGTTCATAAAAAATGACCAAAAATTTATGAAAAATTGCCTATAATTCATGAAAAATGGTCCAAATACATGAAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAATAATGGTCCAAAATTCATGAAAAATGTCCCAAAATTCATGAAAAATGGTCCAAAACTCATGACAAATAGTCCAAAATTCAAATTTTTGCAGGCCACCAACGTCGCTCTGACGCTAATGCGTGAAGCGATGAAACTTCCGCTAGCATGCTCGAATGTGACTCATAAAGTGGTCAA</canonical_amplicon>
		<polymorphic_amplicon>TCTATATCGAAATGCACTGTTTTCGTCGCATAAGGTGGGGAATTCGATGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATTCGCGAAAAGTAGCTCAAAATTCATGAAAAACGACCTAAAATCGATGAAAAATGACCTAAAATTTAAGAAAAATGAACCGAAATCCGATTAAAATTGCTCAAATTTCATGAAAAATGGTCTAAAAATTCTTGAAAATTGACCAAAAAGACCAAATGGGTCCGAAATTTATGAAAAAAAAACCAAAAAATCATGAAAAATACTCAAAAATCTATAAAAAATGGTCCAAATTTCATGAAAAATGGCCTAAAGTTCATAAAAAATGACCAAAAATTTATGAAAAATTGCCTATAATTCATGAAAAATGGTCCAAATACATGAAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAATAATGGYCCAAAATTCATGAAAAATGTCCCAAAATTCATGAAAAATGGTCCAAAACTCATGACAAATAGTCCAAAATTCAAATTTTTGCAGGCCACCAACGTCGCTCTGACGCTAATGCGTGAAGCGATGAAACTTCCGCTAGCATGCTCGAATGTGACTCATAAAGTGGTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23394</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>59382</contig_pos>
        <strand></strand>
        <context>atgaaaaatg[T/G]yccaaaattc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GAAAAATGGTCCAAAATTCATGAATAATGGTCCAAAATTCATGAAAAATG</left_flank>
        <right_flank>CCCAAAATTCATGAAAAATGGTCCAAAACTCATGACAAATAGTCCAAAAT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAATCCTCGCTGATTCTATATCGAAATGCACTGTTTTCGTCGCATAAGGTGGGGAATTCGATGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATTCGCGAAAAGTAGCTCAAAATTCATGAAAAACGACCTAAAATCGATGAAAAATGACCTAAAATTTAAGAAAAATGAACCGAAATCCGATTAAAATTGCTCAAATTTCATGAAAAATGGTCTAAAAATTCTTGAAAATTGACCAAAAAGACCAAATGGGTCCGAAATTTATGAAAAAAAAACCAAAAAATCATGAAAAATACTCAAAAATCTATAAAAAATGGTCCAAATTTCATGAAAAATGGCCTAAAGTTCATAAAAAATGACCAAAAATTTATGAAAAATTGCCTATAATTCATGAAAAATGGTCCAAATACATGAAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAATAATGGTCCAAAATTCATGAAAAATGTCCCAAAATTCATGAAAAATGGTCCAAAACTCATGACAAATAGTCCAAAATTCAAATTTTTGCAGGCCACCAACGTCGCTCTGACGCTAATGCGTGAAGCGATGAAACTTCCGCTAGCATGCTCGAATGTGACTCATAAAGTGGTCAACGTGCTCTCCGCCTGGCTTCTACAGTACGAAATTCCACCGTTCGTCGCGTCTGGAGAGGTCTCGATAGAGCGATGTTCACTTCTGCTGGCCAATATTCTACTCTCTTTCTTTCATAGTCCCTATCTGTCGCAGTGTGGGGAGAGGTAGGTCAAAAAACGAAAAAAAATCTGTGTAGTCCTCGTGGACAAGATTTTTGGAAAATTTGAAAATTTTTTAAAATTTTTTTTTTGAAAAACTTGGTTTTTCTCTCATAAAAAAGTTCACAAGTAGTAGAAAACTCGAAAATTCAGCATTTTTGACTCTAACCCCTCCTGAAGTTTTTGCAGACACTCCTCGGCGATTTCCATCGCTT</canonical>
            <polymorphic>ACAATCCTCGCTGATTCTATATCGAAATGCACTGTTTTCGTCGCATAAGGTGGGGAATTCGATGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATTCGCGAAAAGTAGCTCAAAATTCATGAAAAACGACCTAAAATCGATGAAAAATGACCTAAAATTTAAGAAAAATGAACCGAAATCCGATTAAAATTGCTCAAATTTCATGAAAAATGGTCTAAAAATTCTTGAAAATTGACCAAAAAGACCAAATGGGTCCGAAATTTATGAAAAAAAAACCAAAAAATCATGAAAAATACTCAAAAATCTATAAAAAATGGTCCAAATTTCATGAAAAATGGCCTAAAGTTCATAAAAAATGACCAAAAATTTATGAAAAATTGCCTATAATTCATGAAAAATGGTCCAAATACATGAAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAATAATGGTCCAAAATTCATGAAAAATGKCCCAAAATTCATGAAAAATGGTCCAAAACTCATGACAAATAGTCCAAAATTCAAATTTTTGCAGGCCACCAACGTCGCTCTGACGCTAATGCGTGAAGCGATGAAACTTCCGCTAGCATGCTCGAATGTGACTCATAAAGTGGTCAACGTGCTCTCCGCCTGGCTTCTACAGTACGAAATTCCACCGTTCGTCGCGTCTGGAGAGGTCTCGATAGAGCGATGTTCACTTCTGCTGGCCAATATTCTACTCTCTTTCTTTCATAGTCCCTATCTGTCGCAGTGTGGGGAGAGGTAGGTCAAAAAACGAAAAAAAATCTGTGTAGTCCTCGTGGACAAGATTTTTGGAAAATTTGAAAATTTTTTAAAATTTTTTTTTTGAAAAACTTGGTTTTTCTCTCATAAAAAAGTTCACAAGTAGTAGAAAACTCGAAAATTCAGCATTTTTGACTCTAACCCCTCCTGAAGTTTTTGCAGACACTCCTCGGCGATTTCCATCGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATATCGAAATGCACTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGACCACTTTATGAGTCACATT</pcr_primer_p2>
		<pcr_amplicon_size>632</pcr_amplicon_size>
		<canonical_amplicon>TCTATATCGAAATGCACTGTTTTCGTCGCATAAGGTGGGGAATTCGATGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATTCGCGAAAAGTAGCTCAAAATTCATGAAAAACGACCTAAAATCGATGAAAAATGACCTAAAATTTAAGAAAAATGAACCGAAATCCGATTAAAATTGCTCAAATTTCATGAAAAATGGTCTAAAAATTCTTGAAAATTGACCAAAAAGACCAAATGGGTCCGAAATTTATGAAAAAAAAACCAAAAAATCATGAAAAATACTCAAAAATCTATAAAAAATGGTCCAAATTTCATGAAAAATGGCCTAAAGTTCATAAAAAATGACCAAAAATTTATGAAAAATTGCCTATAATTCATGAAAAATGGTCCAAATACATGAAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAATAATGGTCCAAAATTCATGAAAAATGTCCCAAAATTCATGAAAAATGGTCCAAAACTCATGACAAATAGTCCAAAATTCAAATTTTTGCAGGCCACCAACGTCGCTCTGACGCTAATGCGTGAAGCGATGAAACTTCCGCTAGCATGCTCGAATGTGACTCATAAAGTGGTCAA</canonical_amplicon>
		<polymorphic_amplicon>TCTATATCGAAATGCACTGTTTTCGTCGCATAAGGTGGGGAATTCGATGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATTCGCGAAAAGTAGCTCAAAATTCATGAAAAACGACCTAAAATCGATGAAAAATGACCTAAAATTTAAGAAAAATGAACCGAAATCCGATTAAAATTGCTCAAATTTCATGAAAAATGGTCTAAAAATTCTTGAAAATTGACCAAAAAGACCAAATGGGTCCGAAATTTATGAAAAAAAAACCAAAAAATCATGAAAAATACTCAAAAATCTATAAAAAATGGTCCAAATTTCATGAAAAATGGCCTAAAGTTCATAAAAAATGACCAAAAATTTATGAAAAATTGCCTATAATTCATGAAAAATGGTCCAAATACATGAAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAATAATGGTCCAAAATTCATGAAAAATGKCCCAAAATTCATGAAAAATGGTCCAAAACTCATGACAAATAGTCCAAAATTCAAATTTTTGCAGGCCACCAACGTCGCTCTGACGCTAATGCGTGAAGCGATGAAACTTCCGCTAGCATGCTCGAATGTGACTCATAAAGTGGTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23395</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>59383</contig_pos>
        <strand></strand>
        <context>tgaaaaatgk[C/T]ccaaaattca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATGGTCCAAAATTCATGAATAATGGTCCAAAATTCATGAAAAATGT</left_flank>
        <right_flank>CCAAAATTCATGAAAAATGGTCCAAAACTCATGACAAATAGTCCAAAATT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATCCTCGCTGATTCTATATCGAAATGCACTGTTTTCGTCGCATAAGGTGGGGAATTCGATGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATTCGCGAAAAGTAGCTCAAAATTCATGAAAAACGACCTAAAATCGATGAAAAATGACCTAAAATTTAAGAAAAATGAACCGAAATCCGATTAAAATTGCTCAAATTTCATGAAAAATGGTCTAAAAATTCTTGAAAATTGACCAAAAAGACCAAATGGGTCCGAAATTTATGAAAAAAAAACCAAAAAATCATGAAAAATACTCAAAAATCTATAAAAAATGGTCCAAATTTCATGAAAAATGGCCTAAAGTTCATAAAAAATGACCAAAAATTTATGAAAAATTGCCTATAATTCATGAAAAATGGTCCAAATACATGAAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAATAATGGTCCAAAATTCATGAAAAATGTCCCAAAATTCATGAAAAATGGTCCAAAACTCATGACAAATAGTCCAAAATTCAAATTTTTGCAGGCCACCAACGTCGCTCTGACGCTAATGCGTGAAGCGATGAAACTTCCGCTAGCATGCTCGAATGTGACTCATAAAGTGGTCAACGTGCTCTCCGCCTGGCTTCTACAGTACGAAATTCCACCGTTCGTCGCGTCTGGAGAGGTCTCGATAGAGCGATGTTCACTTCTGCTGGCCAATATTCTACTCTCTTTCTTTCATAGTCCCTATCTGTCGCAGTGTGGGGAGAGGTAGGTCAAAAAACGAAAAAAAATCTGTGTAGTCCTCGTGGACAAGATTTTTGGAAAATTTGAAAATTTTTTAAAATTTTTTTTTTGAAAAACTTGGTTTTTCTCTCATAAAAAAGTTCACAAGTAGTAGAAAACTCGAAAATTCAGCATTTTTGACTCTAACCCCTCCTGAAGTTTTTGCAGACACTCCTCGGCGATTTCCATCGCTTT</canonical>
            <polymorphic>CAATCCTCGCTGATTCTATATCGAAATGCACTGTTTTCGTCGCATAAGGTGGGGAATTCGATGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATTCGCGAAAAGTAGCTCAAAATTCATGAAAAACGACCTAAAATCGATGAAAAATGACCTAAAATTTAAGAAAAATGAACCGAAATCCGATTAAAATTGCTCAAATTTCATGAAAAATGGTCTAAAAATTCTTGAAAATTGACCAAAAAGACCAAATGGGTCCGAAATTTATGAAAAAAAAACCAAAAAATCATGAAAAATACTCAAAAATCTATAAAAAATGGTCCAAATTTCATGAAAAATGGCCTAAAGTTCATAAAAAATGACCAAAAATTTATGAAAAATTGCCTATAATTCATGAAAAATGGTCCAAATACATGAAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAATAATGGTCCAAAATTCATGAAAAATGTYCCAAAATTCATGAAAAATGGTCCAAAACTCATGACAAATAGTCCAAAATTCAAATTTTTGCAGGCCACCAACGTCGCTCTGACGCTAATGCGTGAAGCGATGAAACTTCCGCTAGCATGCTCGAATGTGACTCATAAAGTGGTCAACGTGCTCTCCGCCTGGCTTCTACAGTACGAAATTCCACCGTTCGTCGCGTCTGGAGAGGTCTCGATAGAGCGATGTTCACTTCTGCTGGCCAATATTCTACTCTCTTTCTTTCATAGTCCCTATCTGTCGCAGTGTGGGGAGAGGTAGGTCAAAAAACGAAAAAAAATCTGTGTAGTCCTCGTGGACAAGATTTTTGGAAAATTTGAAAATTTTTTAAAATTTTTTTTTTGAAAAACTTGGTTTTTCTCTCATAAAAAAGTTCACAAGTAGTAGAAAACTCGAAAATTCAGCATTTTTGACTCTAACCCCTCCTGAAGTTTTTGCAGACACTCCTCGGCGATTTCCATCGCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATATCGAAATGCACTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGACCACTTTATGAGTCACATT</pcr_primer_p2>
		<pcr_amplicon_size>632</pcr_amplicon_size>
		<canonical_amplicon>TCTATATCGAAATGCACTGTTTTCGTCGCATAAGGTGGGGAATTCGATGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATTCGCGAAAAGTAGCTCAAAATTCATGAAAAACGACCTAAAATCGATGAAAAATGACCTAAAATTTAAGAAAAATGAACCGAAATCCGATTAAAATTGCTCAAATTTCATGAAAAATGGTCTAAAAATTCTTGAAAATTGACCAAAAAGACCAAATGGGTCCGAAATTTATGAAAAAAAAACCAAAAAATCATGAAAAATACTCAAAAATCTATAAAAAATGGTCCAAATTTCATGAAAAATGGCCTAAAGTTCATAAAAAATGACCAAAAATTTATGAAAAATTGCCTATAATTCATGAAAAATGGTCCAAATACATGAAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAATAATGGTCCAAAATTCATGAAAAATGTCCCAAAATTCATGAAAAATGGTCCAAAACTCATGACAAATAGTCCAAAATTCAAATTTTTGCAGGCCACCAACGTCGCTCTGACGCTAATGCGTGAAGCGATGAAACTTCCGCTAGCATGCTCGAATGTGACTCATAAAGTGGTCAA</canonical_amplicon>
		<polymorphic_amplicon>TCTATATCGAAATGCACTGTTTTCGTCGCATAAGGTGGGGAATTCGATGAAAAATAATCTAAAATGGTCCTAAATTTATGGAAAATGGACCAAAATTCGCGAAAAGTAGCTCAAAATTCATGAAAAACGACCTAAAATCGATGAAAAATGACCTAAAATTTAAGAAAAATGAACCGAAATCCGATTAAAATTGCTCAAATTTCATGAAAAATGGTCTAAAAATTCTTGAAAATTGACCAAAAAGACCAAATGGGTCCGAAATTTATGAAAAAAAAACCAAAAAATCATGAAAAATACTCAAAAATCTATAAAAAATGGTCCAAATTTCATGAAAAATGGCCTAAAGTTCATAAAAAATGACCAAAAATTTATGAAAAATTGCCTATAATTCATGAAAAATGGTCCAAATACATGAAAAATGGTCCAAAATTCCTGAAAAATGGTCCAAAATTCATGAATAATGGTCCAAAATTCATGAAAAATGTYCCAAAATTCATGAAAAATGGTCCAAAACTCATGACAAATAGTCCAAAATTCAAATTTTTGCAGGCCACCAACGTCGCTCTGACGCTAATGCGTGAAGCGATGAAACTTCCGCTAGCATGCTCGAATGTGACTCATAAAGTGGTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23396</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>93049</contig_pos>
        <strand>+</strand>
        <context>ATGTGGAAAA[A/T]GAATTGGAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATATGCTCTCTGGCCAGCTATCCAACGCCGATGTGTCCGATGTGGAAAA</left_flank>
        <right_flank>GAATTGGAGGAGCTATTGGCCGCCCAAGTTCCTGTAGATCTTCCAGAGGT</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCTAGCGAAACAATTGTTGAAAGATGGCAAGAAAGAGTGAGATTCTTTTTAAAAAAATCGAAAAAGTGTTTTTTTTTCAATTTTCAGCCGCGCATTGCTCATCCTTAAGAAGAAGCGATACCAGGAAAATATCATCGATCAAACGCTGAAACATTTAAGCAAAATTGAGCAAATGGTGAGCATGAAAAACCAAAAAAAAAAATTTTTCAAAAAAAATTTTTTCCAGGTAACCGACTTAGAATTTGCTGAAGTTCAACAACGAGTAACCGAGGGACTTCGACAAGGAAATGAGGCTCTAAAGAGGATGAATCAACTGTTCGATATCGATGAAATCGACAAAATCATGGAGGAAACCAAGGAAGCCGCGGAGTATCAAGCGGTATGAGGAGGGACATCCGGATGCACAGATTCACAGAAATTAATTTTTAAAATTTTCAGGAAATTTCAAATATGCTCTCTGGCCAGCTATCCAACGCCGATGTGTCCGATGTGGAAAATGAATTGGAGGAGCTATTGGCCGCCCAAGTTCCTGTAGATCTTCCAGAGGTTCCAGACCATGAAATGCCTGAAAAAGTTGCGGAAAAAGGTAAAATTTTCCGGAAAAAGATATTTTTTCAGCAAAAAATCCGAGAAATTTCAGAAAAAGAGAAGCCACGCCGCGAAAAAATCGCTCTGGAAGCCTAATCGAACATATCTTGTGAATTAATCATTTTTTTGTTTTGTTTGTATTTTTTTCTGTGAATGAATAAATATATTTATTGCTTCTCCGAATTTTTAATTTTCTTGAAGAAAATGTTTTGAAAATTGGCACAAAAATTCCCCAAATATCGCTAAAAATCTTTGATTTCCGCGCGGTTTTTATACGCCCTCCATACCATTTCTCTCCAGCTGCACAGTTGGCTTTTTGGTTAACGCGCTTGACTTCCAAGCGACACCTCTCGAGTTCGACTCCGGGTGCCTCCAAACTCTTTTTGCTTATTTTTATCGATGATTTGATA</canonical>
            <polymorphic>CAGCTAGCGAAACAATTGTTGAAAGATGGCAAGAAAGAGTGAGATTCTTTTTAAAAAAATCGAAAAAGTGTTTTTTTTTCAATTTTCAGCCGCGCATTGCTCATCCTTAAGAAGAAGCGATACCAGGAAAATATCATCGATCAAACGCTGAAACATTTAAGCAAAATTGAGCAAATGGTGAGCATGAAAAACCAAAAAAAAAAATTTTTCAAAAAAAATTTTTTCCAGGTAACCGACTTAGAATTTGCTGAAGTTCAACAACGAGTAACCGAGGGACTTCGACAAGGAAATGAGGCTCTAAAGAGGATGAATCAACTGTTCGATATCGATGAAATCGACAAAATCATGGAGGAAACCAAGGAAGCCGCGGAGTATCAAGCGGTATGAGGAGGGACATCCGGATGCACAGATTCACAGAAATTAATTTTTAAAATTTTCAGGAAATTTCAAATATGCTCTCTGGCCAGCTATCCAACGCCGATGTGTCCGATGTGGAAAAWGAATTGGAGGAGCTATTGGCCGCCCAAGTTCCTGTAGATCTTCCAGAGGTTCCAGACCATGAAATGCCTGAAAAAGTTGCGGAAAAAGGTAAAATTTTCCGGAAAAAGATATTTTTTCAGCAAAAAATCCGAGAAATTTCAGAAAAAGAGAAGCCACGCCGCGAAAAAATCGCTCTGGAAGCCTAATCGAACATATCTTGTGAATTAATCATTTTTTTGTTTTGTTTGTATTTTTTTCTGTGAATGAATAAATATATTTATTGCTTCTCCGAATTTTTAATTTTCTTGAAGAAAATGTTTTGAAAATTGGCACAAAAATTCCCCAAATATCGCTAAAAATCTTTGATTTCCGCGCGGTTTTTATACGCCCTCCATACCATTTCTCTCCAGCTGCACAGTTGGCTTTTTGGTTAACGCGCTTGACTTCCAAGCGACACCTCTCGAGTTCGACTCCGGGTGCCTCCAAACTCTTTTTGCTTATTTTTATCGATGATTTGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATCGATGAAATCGACAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTCTGGAACCTCTGGAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>ATATCGATGAAATCGACAAAATCATGGAGGAAACCAAGGAAGCCGCGGAGTATCAAGCGGTATGAGGAGGGACATCCGGATGCACAGATTCACAGAAATTAATTTTTAAAATTTTCAGGAAATTTCAAATATGCTCTCTGGCCAGCTATCCAACGCCGATGTGTCCGATGTGGAAAATGAATTGGAGGAGCTATTGGCCGCCCAAGTTCCTGTAGATCTTCCAGAGGTTCCAGAC</canonical_amplicon>
		<polymorphic_amplicon>ATATCGATGAAATCGACAAAATCATGGAGGAAACCAAGGAAGCCGCGGAGTATCAAGCGGTATGAGGAGGGACATCCGGATGCACAGATTCACAGAAATTAATTTTTAAAATTTTCAGGAAATTTCAAATATGCTCTCTGGCCAGCTATCCAACGCCGATGTGTCCGATGTGGAAAAWGAATTGGAGGAGCTATTGGCCGCCCAAGTTCCTGTAGATCTTCCAGAGGTTCCAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23397</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>93062</contig_pos>
        <strand>+</strand>
        <context>ATTGGAGGAG[C/T]TATTGGCCGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCAGCTATCCAACGCCGATGTGTCCGATGTGGAAAATGAATTGGAGGAG</left_flank>
        <right_flank>TATTGGCCGCCCAAGTTCCTGTAGATCTTCCAGAGGTTCCAGACCATGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGTTGAAAGATGGCAAGAAAGAGTGAGATTCTTTTTAAAAAAATCGAAAAAGTGTTTTTTTTTCAATTTTCAGCCGCGCATTGCTCATCCTTAAGAAGAAGCGATACCAGGAAAATATCATCGATCAAACGCTGAAACATTTAAGCAAAATTGAGCAAATGGTGAGCATGAAAAACCAAAAAAAAAAATTTTTCAAAAAAAATTTTTTCCAGGTAACCGACTTAGAATTTGCTGAAGTTCAACAACGAGTAACCGAGGGACTTCGACAAGGAAATGAGGCTCTAAAGAGGATGAATCAACTGTTCGATATCGATGAAATCGACAAAATCATGGAGGAAACCAAGGAAGCCGCGGAGTATCAAGCGGTATGAGGAGGGACATCCGGATGCACAGATTCACAGAAATTAATTTTTAAAATTTTCAGGAAATTTCAAATATGCTCTCTGGCCAGCTATCCAACGCCGATGTGTCCGATGTGGAAAATGAATTGGAGGAGCTATTGGCCGCCCAAGTTCCTGTAGATCTTCCAGAGGTTCCAGACCATGAAATGCCTGAAAAAGTTGCGGAAAAAGGTAAAATTTTCCGGAAAAAGATATTTTTTCAGCAAAAAATCCGAGAAATTTCAGAAAAAGAGAAGCCACGCCGCGAAAAAATCGCTCTGGAAGCCTAATCGAACATATCTTGTGAATTAATCATTTTTTTGTTTTGTTTGTATTTTTTTCTGTGAATGAATAAATATATTTATTGCTTCTCCGAATTTTTAATTTTCTTGAAGAAAATGTTTTGAAAATTGGCACAAAAATTCCCCAAATATCGCTAAAAATCTTTGATTTCCGCGCGGTTTTTATACGCCCTCCATACCATTTCTCTCCAGCTGCACAGTTGGCTTTTTGGTTAACGCGCTTGACTTCCAAGCGACACCTCTCGAGTTCGACTCCGGGTGCCTCCAAACTCTTTTTGCTTATTTTTATCGATGATTTGATATCGGAAAAGAGTT</canonical>
            <polymorphic>AATTGTTGAAAGATGGCAAGAAAGAGTGAGATTCTTTTTAAAAAAATCGAAAAAGTGTTTTTTTTTCAATTTTCAGCCGCGCATTGCTCATCCTTAAGAAGAAGCGATACCAGGAAAATATCATCGATCAAACGCTGAAACATTTAAGCAAAATTGAGCAAATGGTGAGCATGAAAAACCAAAAAAAAAAATTTTTCAAAAAAAATTTTTTCCAGGTAACCGACTTAGAATTTGCTGAAGTTCAACAACGAGTAACCGAGGGACTTCGACAAGGAAATGAGGCTCTAAAGAGGATGAATCAACTGTTCGATATCGATGAAATCGACAAAATCATGGAGGAAACCAAGGAAGCCGCGGAGTATCAAGCGGTATGAGGAGGGACATCCGGATGCACAGATTCACAGAAATTAATTTTTAAAATTTTCAGGAAATTTCAAATATGCTCTCTGGCCAGCTATCCAACGCCGATGTGTCCGATGTGGAAAATGAATTGGAGGAGYTATTGGCCGCCCAAGTTCCTGTAGATCTTCCAGAGGTTCCAGACCATGAAATGCCTGAAAAAGTTGCGGAAAAAGGTAAAATTTTCCGGAAAAAGATATTTTTTCAGCAAAAAATCCGAGAAATTTCAGAAAAAGAGAAGCCACGCCGCGAAAAAATCGCTCTGGAAGCCTAATCGAACATATCTTGTGAATTAATCATTTTTTTGTTTTGTTTGTATTTTTTTCTGTGAATGAATAAATATATTTATTGCTTCTCCGAATTTTTAATTTTCTTGAAGAAAATGTTTTGAAAATTGGCACAAAAATTCCCCAAATATCGCTAAAAATCTTTGATTTCCGCGCGGTTTTTATACGCCCTCCATACCATTTCTCTCCAGCTGCACAGTTGGCTTTTTGGTTAACGCGCTTGACTTCCAAGCGACACCTCTCGAGTTCGACTCCGGGTGCCTCCAAACTCTTTTTGCTTATTTTTATCGATGATTTGATATCGGAAAAGAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>454 378 123 45</canonical_bands>
                <polymorphic_bands>454 423 123</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>209 206 134 111 99 76 69 45 28 12 7 4</canonical_bands>
                <polymorphic_bands>209 206 134 111 99 76 69 52 28 12 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAATTTCAAATATGCTCTCT</pcr_primer_p1>
		<pcr_primer_p2>TTCACAAGATATGTTCGATTAGG</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>GGAAATTTCAAATATGCTCTCTGGCCAGCTATCCAACGCCGATGTGTCCGATGTGGAAAATGAATTGGAGGAGCTATTGGCCGCCCAAGTTCCTGTAGATCTTCCAGAGGTTCCAGACCATGAAATGCCTGAAAAAGTTGCGGAAAAAGGTAAAATTTTCCGGAAAAAGATATTTTTTCAGCAAAAAATCCGAGAAATTTCAGAAAAAGAGAAGCCACGCCGCGAAAAAATCGCTCTGGAAGCCTAATCGAACATATCTTGTGAA</canonical_amplicon>
		<polymorphic_amplicon>GGAAATTTCAAATATGCTCTCTGGCCAGCTATCCAACGCCGATGTGTCCGATGTGGAAAATGAATTGGAGGAGYTATTGGCCGCCCAAGTTCCTGTAGATCTTCCAGAGGTTCCAGACCATGAAATGCCTGAAAAAGTTGCGGAAAAAGGTAAAATTTTCCGGAAAAAGATATTTTTTCAGCAAAAAATCCGAGAAATTTCAGAAAAAGAGAAGCCACGCCGCGAAAAAATCGCTCTGGAAGCCTAATCGAACATATCTTGTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23398</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>93117</contig_pos>
        <strand>+</strand>
        <context>CATGAAATGC[A/C]TGAAAAAGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGCCGCCCAAGTTCCTGTAGATCTTCCAGAGGTTCCAGACCATGAAATGC</left_flank>
        <right_flank>TGAAAAAGTTGCGGAAAAAGGTAAAATTTTCCGGAAAAAGATATTTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTTTTTTTCAATTTTCAGCCGCGCATTGCTCATCCTTAAGAAGAAGCGATACCAGGAAAATATCATCGATCAAACGCTGAAACATTTAAGCAAAATTGAGCAAATGGTGAGCATGAAAAACCAAAAAAAAAAATTTTTCAAAAAAAATTTTTTCCAGGTAACCGACTTAGAATTTGCTGAAGTTCAACAACGAGTAACCGAGGGACTTCGACAAGGAAATGAGGCTCTAAAGAGGATGAATCAACTGTTCGATATCGATGAAATCGACAAAATCATGGAGGAAACCAAGGAAGCCGCGGAGTATCAAGCGGTATGAGGAGGGACATCCGGATGCACAGATTCACAGAAATTAATTTTTAAAATTTTCAGGAAATTTCAAATATGCTCTCTGGCCAGCTATCCAACGCCGATGTGTCCGATGTGGAAAATGAATTGGAGGAGCTATTGGCCGCCCAAGTTCCTGTAGATCTTCCAGAGGTTCCAGACCATGAAATGCCTGAAAAAGTTGCGGAAAAAGGTAAAATTTTCCGGAAAAAGATATTTTTTCAGCAAAAAATCCGAGAAATTTCAGAAAAAGAGAAGCCACGCCGCGAAAAAATCGCTCTGGAAGCCTAATCGAACATATCTTGTGAATTAATCATTTTTTTGTTTTGTTTGTATTTTTTTCTGTGAATGAATAAATATATTTATTGCTTCTCCGAATTTTTAATTTTCTTGAAGAAAATGTTTTGAAAATTGGCACAAAAATTCCCCAAATATCGCTAAAAATCTTTGATTTCCGCGCGGTTTTTATACGCCCTCCATACCATTTCTCTCCAGCTGCACAGTTGGCTTTTTGGTTAACGCGCTTGACTTCCAAGCGACACCTCTCGAGTTCGACTCCGGGTGCCTCCAAACTCTTTTTGCTTATTTTTATCGATGATTTGATATCGGAAAAGAGTTGAAAAAAAGAAAACTTAATTTTAAATGGTTAAAAAAAAGAACATCGTCAGAAATC</canonical>
            <polymorphic>TGTTTTTTTTTCAATTTTCAGCCGCGCATTGCTCATCCTTAAGAAGAAGCGATACCAGGAAAATATCATCGATCAAACGCTGAAACATTTAAGCAAAATTGAGCAAATGGTGAGCATGAAAAACCAAAAAAAAAAATTTTTCAAAAAAAATTTTTTCCAGGTAACCGACTTAGAATTTGCTGAAGTTCAACAACGAGTAACCGAGGGACTTCGACAAGGAAATGAGGCTCTAAAGAGGATGAATCAACTGTTCGATATCGATGAAATCGACAAAATCATGGAGGAAACCAAGGAAGCCGCGGAGTATCAAGCGGTATGAGGAGGGACATCCGGATGCACAGATTCACAGAAATTAATTTTTAAAATTTTCAGGAAATTTCAAATATGCTCTCTGGCCAGCTATCCAACGCCGATGTGTCCGATGTGGAAAATGAATTGGAGGAGCTATTGGCCGCCCAAGTTCCTGTAGATCTTCCAGAGGTTCCAGACCATGAAATGCMTGAAAAAGTTGCGGAAAAAGGTAAAATTTTCCGGAAAAAGATATTTTTTCAGCAAAAAATCCGAGAAATTTCAGAAAAAGAGAAGCCACGCCGCGAAAAAATCGCTCTGGAAGCCTAATCGAACATATCTTGTGAATTAATCATTTTTTTGTTTTGTTTGTATTTTTTTCTGTGAATGAATAAATATATTTATTGCTTCTCCGAATTTTTAATTTTCTTGAAGAAAATGTTTTGAAAATTGGCACAAAAATTCCCCAAATATCGCTAAAAATCTTTGATTTCCGCGCGGTTTTTATACGCCCTCCATACCATTTCTCTCCAGCTGCACAGTTGGCTTTTTGGTTAACGCGCTTGACTTCCAAGCGACACCTCTCGAGTTCGACTCCGGGTGCCTCCAAACTCTTTTTGCTTATTTTTATCGATGATTTGATATCGGAAAAGAGTTGAAAAAAAGAAAACTTAATTTTAAATGGTTAAAAAAAAGAACATCGTCAGAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAATTTCAAATATGCTCTCT</pcr_primer_p1>
		<pcr_primer_p2>TTCACAAGATATGTTCGATTAGG</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>GGAAATTTCAAATATGCTCTCTGGCCAGCTATCCAACGCCGATGTGTCCGATGTGGAAAATGAATTGGAGGAGCTATTGGCCGCCCAAGTTCCTGTAGATCTTCCAGAGGTTCCAGACCATGAAATGCCTGAAAAAGTTGCGGAAAAAGGTAAAATTTTCCGGAAAAAGATATTTTTTCAGCAAAAAATCCGAGAAATTTCAGAAAAAGAGAAGCCACGCCGCGAAAAAATCGCTCTGGAAGCCTAATCGAACATATCTTGTGAA</canonical_amplicon>
		<polymorphic_amplicon>GGAAATTTCAAATATGCTCTCTGGCCAGCTATCCAACGCCGATGTGTCCGATGTGGAAAATGAATTGGAGGAGCTATTGGCCGCCCAAGTTCCTGTAGATCTTCCAGAGGTTCCAGACCATGAAATGCMTGAAAAAGTTGCGGAAAAAGGTAAAATTTTCCGGAAAAAGATATTTTTTCAGCAAAAAATCCGAGAAATTTCAGAAAAAGAGAAGCCACGCCGCGAAAAAATCGCTCTGGAAGCCTAATCGAACATATCTTGTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23399</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>93195</contig_pos>
        <strand>+</strand>
        <context>ATTTCAGAAA[C/T]AGAGAAGCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCCGGAAAAAGATATTTTTTCAGCAAAAAATCCGAGAAATTTCAGAAA</left_flank>
        <right_flank>AGAGAAGCCACGCCGCGAAAAAATCGCTCTGGAAGCCTAATCGAACATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTGAAACATTTAAGCAAAATTGAGCAAATGGTGAGCATGAAAAACCAAAAAAAAAAATTTTTCAAAAAAAATTTTTTCCAGGTAACCGACTTAGAATTTGCTGAAGTTCAACAACGAGTAACCGAGGGACTTCGACAAGGAAATGAGGCTCTAAAGAGGATGAATCAACTGTTCGATATCGATGAAATCGACAAAATCATGGAGGAAACCAAGGAAGCCGCGGAGTATCAAGCGGTATGAGGAGGGACATCCGGATGCACAGATTCACAGAAATTAATTTTTAAAATTTTCAGGAAATTTCAAATATGCTCTCTGGCCAGCTATCCAACGCCGATGTGTCCGATGTGGAAAATGAATTGGAGGAGCTATTGGCCGCCCAAGTTCCTGTAGATCTTCCAGAGGTTCCAGACCATGAAATGCCTGAAAAAGTTGCGGAAAAAGGTAAAATTTTCCGGAAAAAGATATTTTTTCAGCAAAAAATCCGAGAAATTTCAGAAAAAGAGAAGCCACGCCGCGAAAAAATCGCTCTGGAAGCCTAATCGAACATATCTTGTGAATTAATCATTTTTTTGTTTTGTTTGTATTTTTTTCTGTGAATGAATAAATATATTTATTGCTTCTCCGAATTTTTAATTTTCTTGAAGAAAATGTTTTGAAAATTGGCACAAAAATTCCCCAAATATCGCTAAAAATCTTTGATTTCCGCGCGGTTTTTATACGCCCTCCATACCATTTCTCTCCAGCTGCACAGTTGGCTTTTTGGTTAACGCGCTTGACTTCCAAGCGACACCTCTCGAGTTCGACTCCGGGTGCCTCCAAACTCTTTTTGCTTATTTTTATCGATGATTTGATATCGGAAAAGAGTTGAAAAAAAGAAAACTTAATTTTAAATGGTTAAAAAAAAGAACATCGTCAGAAATCAAATTTATTGGGACATGGTTTCTAAGCAAACATAGAGACGCAGACATCCGCACACACTCTCTGTATTATTGACTTATT</canonical>
            <polymorphic>GCTGAAACATTTAAGCAAAATTGAGCAAATGGTGAGCATGAAAAACCAAAAAAAAAAATTTTTCAAAAAAAATTTTTTCCAGGTAACCGACTTAGAATTTGCTGAAGTTCAACAACGAGTAACCGAGGGACTTCGACAAGGAAATGAGGCTCTAAAGAGGATGAATCAACTGTTCGATATCGATGAAATCGACAAAATCATGGAGGAAACCAAGGAAGCCGCGGAGTATCAAGCGGTATGAGGAGGGACATCCGGATGCACAGATTCACAGAAATTAATTTTTAAAATTTTCAGGAAATTTCAAATATGCTCTCTGGCCAGCTATCCAACGCCGATGTGTCCGATGTGGAAAATGAATTGGAGGAGCTATTGGCCGCCCAAGTTCCTGTAGATCTTCCAGAGGTTCCAGACCATGAAATGCCTGAAAAAGTTGCGGAAAAAGGTAAAATTTTCCGGAAAAAGATATTTTTTCAGCAAAAAATCCGAGAAATTTCAGAAAYAGAGAAGCCACGCCGCGAAAAAATCGCTCTGGAAGCCTAATCGAACATATCTTGTGAATTAATCATTTTTTTGTTTTGTTTGTATTTTTTTCTGTGAATGAATAAATATATTTATTGCTTCTCCGAATTTTTAATTTTCTTGAAGAAAATGTTTTGAAAATTGGCACAAAAATTCCCCAAATATCGCTAAAAATCTTTGATTTCCGCGCGGTTTTTATACGCCCTCCATACCATTTCTCTCCAGCTGCACAGTTGGCTTTTTGGTTAACGCGCTTGACTTCCAAGCGACACCTCTCGAGTTCGACTCCGGGTGCCTCCAAACTCTTTTTGCTTATTTTTATCGATGATTTGATATCGGAAAAGAGTTGAAAAAAAGAAAACTTAATTTTAAATGGTTAAAAAAAAGAACATCGTCAGAAATCAAATTTATTGGGACATGGTTTCTAAGCAAACATAGAGACGCAGACATCCGCACACACTCTCTGTATTATTGACTTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTTCCAGAGGTTCCAGAC</pcr_primer_p1>
		<pcr_primer_p2>AGAAAATTAAAAATTCGGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCTTCCAGAGGTTCCAGACCATGAAATGCCTGAAAAAGTTGCGGAAAAAGGTAAAATTTTCCGGAAAAAGATATTTTTTCAGCAAAAAATCCGAGAAATTTCAGAAAAAGAGAAGCCACGCCGCGAAAAAATCGCTCTGGAAGCCTAATCGAACATATCTTGTGAATTAATCATTTTTTTGTTTTGTTTGTATTTTTTTCTGTGAATGAATAAATATATTTATTGCTTCTCCGAATTTTTAATTTTCT</canonical_amplicon>
		<polymorphic_amplicon>ATCTTCCAGAGGTTCCAGACCATGAAATGCCTGAAAAAGTTGCGGAAAAAGGTAAAATTTTCCGGAAAAAGATATTTTTTCAGCAAAAAATCCGAGAAATTTCAGAAAYAGAGAAGCCACGCCGCGAAAAAATCGCTCTGGAAGCCTAATCGAACATATCTTGTGAATTAATCATTTTTTTGTTTTGTTTGTATTTTTTTCTGTGAATGAATAAATATATTTATTGCTTCTCCGAATTTTTAATTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23400</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>93491</contig_pos>
        <strand>+</strand>
        <context>CRACACCTCT[C/G]GAGTTCGACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGCACAGTTGGCTTTTTGGTTAACGCGCTTGACTTCCAAGCGACACCTCT</left_flank>
        <right_flank>GAGTTCGACTCCGGGTGCCTCCAAACTCTTTTTGCTTATTTTTATCGATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTCAAATATGCTCTCTGGCCAGCTATCCAACGCCGATGTGTCCGATGTGGAAAATGAATTGGAGGAGCTATTGGCCGCCCAAGTTCCTGTAGATCTTCCAGAGGTTCCAGACCATGAAATGCCTGAAAAAGTTGCGGAAAAAGGTAAAATTTTCCGGAAAAAGATATTTTTTCAGCAAAAAATCCGAGAAATTTCAGAAAAAGAGAAGCCACGCCGCGAAAAAATCGCTCTGGAAGCCTAATCGAACATATCTTGTGAATTAATCATTTTTTTGTTTTGTTTGTATTTTTTTCTGTGAATGAATAAATATATTTATTGCTTCTCCGAATTTTTAATTTTCTTGAAGAAAATGTTTTGAAAATTGGCACAAAAATTCCCCAAATATCGCTAAAAATCTTTGATTTCCGCGCGGTTTTTATACGCCCTCCATACCATTTCTCTCCAGCTGCACAGTTGGCTTTTTGGTTAACGCGCTTGACTTCCAAGCGACACCTCTCGAGTTCGACTCCGGGTGCCTCCAAACTCTTTTTGCTTATTTTTATCGATGATTTGATATCGGAAAAGAGTTGAAAAAAAGAAAACTTAATTTTAAATGGTTAAAAAAAAGAACATCGTCAGAAATCAAATTTATTGGGACATGGTTTCTAAGCAAACATAGAGACGCAGACATCCGCACACACTCTCTGTATTATTGACTTATTGTGTCCTTTTGCGGAGATCTTTCCCCGATTTTTTTAGGAAAAATCAGAAAATTCCAGAAAAAATGACGAATACAACACGACGACGAATGCCGATAAGTGAGGAGAACGAAGGTGAGTCGCCACCAAAAGCCGCCCACTCTTATACGCACTCTAACCTCTCATATGTCAACTGCACGCTTTGTGTTTTGGCTAACGCGCCTGGCCACCAAGCGACACCTCGGGGGTTCGACCCTCACTGCTTCCAAACTCTTTATTTTCTTTTTGCTTCGTTTTCTTGACTTTAGCATTGAGCAAGC</canonical>
            <polymorphic>AATTTCAAATATGCTCTCTGGCCAGCTATCCAACGCCGATGTGTCCGATGTGGAAAATGAATTGGAGGAGCTATTGGCCGCCCAAGTTCCTGTAGATCTTCCAGAGGTTCCAGACCATGAAATGCCTGAAAAAGTTGCGGAAAAAGGTAAAATTTTCCGGAAAAAGATATTTTTTCAGCAAAAAATCCGAGAAATTTCAGAAAAAGAGAAGCCACGCCGCGAAAAAATCGCTCTGGAAGCCTAATCGAACATATCTTGTGAATTAATCATTTTTTTGTTTTGTTTGTATTTTTTTCTGTGAATGAATAAATATATTTATTGCTTCTCCGAATTTTTAATTTTCTTGAAGAAAATGTTTTGAAAATTGGCACAAAAATTCCCCAAATATCGCTAAAAATCTTTGATTTCCGCGCGGTTTTTATACGCCCTCCATACCATTTCTCTCCAGCTGCACAGTTGGCTTTTTGGTTAACGCGCTTGACTTCCAAGCGACACCTCTSGAGTTCGACTCCGGGTGCCTCCAAACTCTTTTTGCTTATTTTTATCGATGATTTGATATCGGAAAAGAGTTGAAAAAAAGAAAACTTAATTTTAAATGGTTAAAAAAAAGAACATCGTCAGAAATCAAATTTATTGGGACATGGTTTCTAAGCAAACATAGAGACGCAGACATCCGCACACACTCTCTGTATTATTGACTTATTGTGTCCTTTTGCGGAGATCTTTCCCCGATTTTTTTAGGAAAAATCAGAAAATTCCAGAAAAAATGACGAATACAACACGACGACGAATGCCGATAAGTGAGGAGAACGAAGGTGAGTCGCCACCAAAAGCCGCCCACTCTTATACGCACTCTAACCTCTCATATGTCAACTGCACGCTTTGTGTTTTGGCTAACGCGCCTGGCCACCAAGCGACACCTCGGGGGTTCGACCCTCACTGCTTCCAAACTCTTTATTTTCTTTTTGCTTCGTTTTCTTGACTTTAGCATTGAGCAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>498 423 79</canonical_bands>
                <polymorphic_bands>921 79</polymorphic_bands>
            </assay>
            <assay>
                <site>CTCGAG</site>
                <isoschizomers>
                    <enzyme>BssHI</enzyme>
                    <enzyme>PaeR7I</enzyme>
                    <enzyme>SciI</enzyme>
                    <enzyme>Sfr274I</enzyme>
                    <enzyme>SlaI</enzyme>
                    <enzyme>TliI</enzyme>
                    <enzyme>XhoI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>385 254 246 69 40 6</canonical_bands>
                <polymorphic_bands>385 260 246 69 40</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCTCCGAATTTTTAATTTTCT</pcr_primer_p1>
		<pcr_primer_p2>ACTCTTTTCCGATATCAAATCAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTCTCCGAATTTTTAATTTTCTTGAAGAAAATGTTTTGAAAATTGGCACAAAAATTCCCCAAATATCGCTAAAAATCTTTGATTTCCGCGCGGTTTTTATACGCCCTCCATACCATTTCTCTCCAGCTGCACAGTTGGCTTTTTGGTTAACGCGCTTGACTTCCAAGCGACACCTCTCGAGTTCGACTCCGGGTGCCTCCAAACTCTTTTTGCTTATTTTTATCGATGATTTGATATCGGAAAAGAGT</canonical_amplicon>
		<polymorphic_amplicon>CTTCTCCGAATTTTTAATTTTCTTGAAGAAAATGTTTTGAAAATTGGCACAAAAATTCCCCAAATATCGCTAAAAATCTTTGATTTCCGCGCGGTTTTTATACGCCCTCCATACCATTTCTCTCCAGCTGCACAGTTGGCTTTTTGGTTAACGCGCTTGACTTCCAAGCGACACCTCTSGAGTTCGACTCCGGGTGCCTCCAAACTCTTTTTGCTTATTTTTATCGATGATTTGATATCGGAAAAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23401</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>93510</contig_pos>
        <strand>+</strand>
        <context>CTCCGGGTGC[A/C]TCCAAACTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTAACGCGCTTGACTTCCAAGCGACACCTCTCGAGTTCGACTCCGGGTGC</left_flank>
        <right_flank>TCCAAACTCTTTTTGCTTATTTTTATCGATGATTTGATATCGGAAAAGAG</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCCAGCTATCCAACGCCGATGTGTCCGATGTGGAAAATGAATTGGAGGAGCTATTGGCCGCCCAAGTTCCTGTAGATCTTCCAGAGGTTCCAGACCATGAAATGCCTGAAAAAGTTGCGGAAAAAGGTAAAATTTTCCGGAAAAAGATATTTTTTCAGCAAAAAATCCGAGAAATTTCAGAAAAAGAGAAGCCACGCCGCGAAAAAATCGCTCTGGAAGCCTAATCGAACATATCTTGTGAATTAATCATTTTTTTGTTTTGTTTGTATTTTTTTCTGTGAATGAATAAATATATTTATTGCTTCTCCGAATTTTTAATTTTCTTGAAGAAAATGTTTTGAAAATTGGCACAAAAATTCCCCAAATATCGCTAAAAATCTTTGATTTCCGCGCGGTTTTTATACGCCCTCCATACCATTTCTCTCCAGCTGCACAGTTGGCTTTTTGGTTAACGCGCTTGACTTCCAAGCGACACCTCTCGAGTTCGACTCCGGGTGCCTCCAAACTCTTTTTGCTTATTTTTATCGATGATTTGATATCGGAAAAGAGTTGAAAAAAAGAAAACTTAATTTTAAATGGTTAAAAAAAAGAACATCGTCAGAAATCAAATTTATTGGGACATGGTTTCTAAGCAAACATAGAGACGCAGACATCCGCACACACTCTCTGTATTATTGACTTATTGTGTCCTTTTGCGGAGATCTTTCCCCGATTTTTTTAGGAAAAATCAGAAAATTCCAGAAAAAATGACGAATACAACACGACGACGAATGCCGATAAGTGAGGAGAACGAAGGTGAGTCGCCACCAAAAGCCGCCCACTCTTATACGCACTCTAACCTCTCATATGTCAACTGCACGCTTTGTGTTTTGGCTAACGCGCCTGGCCACCAAGCGACACCTCGGGGGTTCGACCCTCACTGCTTCCAAACTCTTTATTTTCTTTTTGCTTCGTTTTCTTGACTTTAGCATTGAGCAAGCACAAAACGGAACGGAGGCG</canonical>
            <polymorphic>GGCCAGCTATCCAACGCCGATGTGTCCGATGTGGAAAATGAATTGGAGGAGCTATTGGCCGCCCAAGTTCCTGTAGATCTTCCAGAGGTTCCAGACCATGAAATGCCTGAAAAAGTTGCGGAAAAAGGTAAAATTTTCCGGAAAAAGATATTTTTTCAGCAAAAAATCCGAGAAATTTCAGAAAAAGAGAAGCCACGCCGCGAAAAAATCGCTCTGGAAGCCTAATCGAACATATCTTGTGAATTAATCATTTTTTTGTTTTGTTTGTATTTTTTTCTGTGAATGAATAAATATATTTATTGCTTCTCCGAATTTTTAATTTTCTTGAAGAAAATGTTTTGAAAATTGGCACAAAAATTCCCCAAATATCGCTAAAAATCTTTGATTTCCGCGCGGTTTTTATACGCCCTCCATACCATTTCTCTCCAGCTGCACAGTTGGCTTTTTGGTTAACGCGCTTGACTTCCAAGCGACACCTCTCGAGTTCGACTCCGGGTGCMTCCAAACTCTTTTTGCTTATTTTTATCGATGATTTGATATCGGAAAAGAGTTGAAAAAAAGAAAACTTAATTTTAAATGGTTAAAAAAAAGAACATCGTCAGAAATCAAATTTATTGGGACATGGTTTCTAAGCAAACATAGAGACGCAGACATCCGCACACACTCTCTGTATTATTGACTTATTGTGTCCTTTTGCGGAGATCTTTCCCCGATTTTTTTAGGAAAAATCAGAAAATTCCAGAAAAAATGACGAATACAACACGACGACGAATGCCGATAAGTGAGGAGAACGAAGGTGAGTCGCCACCAAAAGCCGCCCACTCTTATACGCACTCTAACCTCTCATATGTCAACTGCACGCTTTGTGTTTTGGCTAACGCGCCTGGCCACCAAGCGACACCTCGGGGGTTCGACCCTCACTGCTTCCAAACTCTTTATTTTCTTTTTGCTTCGTTTTCTTGACTTTAGCATTGAGCAAGCACAAAACGGAACGGAGGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>503 408 89</canonical_bands>
                <polymorphic_bands>911 89</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTCCGAATTTTTAATTTTCTT</pcr_primer_p1>
		<pcr_primer_p2>CAACTCTTTTCCGATATCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTCCGAATTTTTAATTTTCTTGAAGAAAATGTTTTGAAAATTGGCACAAAAATTCCCCAAATATCGCTAAAAATCTTTGATTTCCGCGCGGTTTTTATACGCCCTCCATACCATTTCTCTCCAGCTGCACAGTTGGCTTTTTGGTTAACGCGCTTGACTTCCAAGCGACACCTCTCGAGTTCGACTCCGGGTGCCTCCAAACTCTTTTTGCTTATTTTTATCGATGATTTGATATCGGAAAAGAGTTG</canonical_amplicon>
		<polymorphic_amplicon>TTCTCCGAATTTTTAATTTTCTTGAAGAAAATGTTTTGAAAATTGGCACAAAAATTCCCCAAATATCGCTAAAAATCTTTGATTTCCGCGCGGTTTTTATACGCCCTCCATACCATTTCTCTCCAGCTGCACAGTTGGCTTTTTGGTTAACGCGCTTGACTTCCAAGCGACACCTCTCGAGTTCGACTCCGGGTGCMTCCAAACTCTTTTTGCTTATTTTTATCGATGATTTGATATCGGAAAAGAGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23402</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>107203</contig_pos>
        <strand></strand>
        <context>TTCAATTTTT[G/T]CAGGAAGTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAAATAAGATAAGGAGGGGTGGTTTTTTTAATTGAAAATTTCAATTTTT</left_flank>
        <right_flank>CAGGAAGTCAAAATGGGAGAAGTCGCTTCTATATATGACAATTTCCAGTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCCTTGTTTTTGGCGCCCCTAGCCGGAAAGGGGGGGGGGGTACGGCGTAAAAAGAAGGGGGGGGGGGGGGTGCACTTTCAGGTCGCAAGGAAGGAGGGCCTCTTCCACGTGGCATAACTCCTCAGGGCCTGATTTTTCAAAAAAGTGGTCAACTACAAAAATAAACCTCTTGTTTTGTTTGGTCTACTCTGAAAATGTCAGGCAAATCGAAAAAGTTTGAAGTGCGTTCTAGCGCGTTCTAGCGCGTTTGCCGCAAGGAAGGGGTGGTGGCGCCGAAAAAATAGGGCCTCTTCCACGTGGCATAACTCTTCAGGGCCTAATTTTTCGAAAAAGTTGTCAATTATAAAAATAAAGCGCTAGTAATGTTTAGTGTACTTTAAAATTTTCAGAAAGTTTGAAAAAGTTTGAATTAGTTTTTAGAGAGCTCCAAAATTACCGATTTTCAACTGAAAATAAGATAAGGAGGGGTGGTTTTTTTAATTGAAAATTTCAATTTTTGCAGGAAGTCAAAATGGGAGAAGTCGCTTCTATATATGACAATTTCCAGTTCTTCTTTCTTCCAAAATTTTTTTTTCGAAAATCAGATTTTTTGAATTTCCCGCCAAAATCTGTCTTCTCTTCCCCCCATTGTCACCTTTTCTCGTCAGAATCGAAATTTCGTTGCATTTTATGTGTGGTGTGGTGGTGTAGGGGTAATCTGTCTGTGTCTCTCACTCTCTGCACTCTCTCCTCTCCACGCACTCTCTCACTCTCGCACTCTCTCTCTCTATCTCTCCCCTGTTCCTAGTTTCCAACGCCACTTTTTTGGCTGTTGGCGTTTTTAGGCCCATTTTTCGAATGTTTTTTTTTGCAATTGTCTTAAAAAATGACGAAAAAAGAAATCTGGATTTTCGGGAAATTTCAGAAAAACTCAATTCGAAAGTTCCTAACTATTCTAAGCATTTCAAATTTTAGAAAACGAAACTTTAGATATTGTCACCCCTATACTTTAAGCACAAT</canonical>
            <polymorphic>ACCCTTGTTTTTGGCGCCCCTAGCCGGAAAGGGGGGGGGGGTACGGCGTAAAAAGAAGGGGGGGGGGGGGGTGCACTTTCAGGTCGCAAGGAAGGAGGGCCTCTTCCACGTGGCATAACTCCTCAGGGCCTGATTTTTCAAAAAAGTGGTCAACTACAAAAATAAACCTCTTGTTTTGTTTGGTCTACTCTGAAAATGTCAGGCAAATCGAAAAAGTTTGAAGTGCGTTCTAGCGCGTTCTAGCGCGTTTGCCGCAAGGAAGGGGTGGTGGCGCCGAAAAAATAGGGCCTCTTCCACGTGGCATAACTCTTCAGGGCCTAATTTTTCGAAAAAGTTGTCAATTATAAAAATAAAGCGCTAGTAATGTTTAGTGTACTTTAAAATTTTCAGAAAGTTTGAAAAAGTTTGAATTAGTTTTTAGAGAGCTCCAAAATTACCGATTTTCAACTGAAAATAAGATAAGGAGGGGTGGTTTTTTTAATTGAAAATTTCAATTTTTKCAGGAAGTCAAAATGGGAGAAGTCGCTTCTATATATGACAATTTCCAGTTCTTCTTTCTTCCAAAATTTTTTTTTCGAAAATCAGATTTTTTGAATTTCCCGCCAAAATCTGTCTTCTCTTCCCCCCATTGTCACCTTTTCTCGTCAGAATCGAAATTTCGTTGCATTTTATGTGTGGTGTGGTGGTGTAGGGGTAATCTGTCTGTGTCTCTCACTCTCTGCACTCTCTCCTCTCCACGCACTCTCTCACTCTCGCACTCTCTCTCTCTATCTCTCCCCTGTTCCTAGTTTCCAACGCCACTTTTTTGGCTGTTGGCGTTTTTAGGCCCATTTTTCGAATGTTTTTTTTTGCAATTGTCTTAAAAAATGACGAAAAAAGAAATCTGGATTTTCGGGAAATTTCAGAAAAACTCAATTCGAAAGTTCCTAACTATTCTAAGCATTTCAAATTTTAGAAAACGAAACTTTAGATATTGTCACCCCTATACTTTAAGCACAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>427 164 149 130 73 57</canonical_bands>
                <polymorphic_bands>591 149 130 73 57</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAACTGAAAATAAGATAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>ACACATAAAATGCAACGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>TTTCAACTGAAAATAAGATAAGGAGGGGTGGTTTTTTTAATTGAAAATTTCAATTTTTGCAGGAAGTCAAAATGGGAGAAGTCGCTTCTATATATGACAATTTCCAGTTCTTCTTTCTTCCAAAATTTTTTTTTCGAAAATCAGATTTTTTGAATTTCCCGCCAAAATCTGTCTTCTCTTCCCCCCATTGTCACCTTTTCTCGTCAGAATCGAAATTTCGTTGCATTTTATGTGT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAACTGAAAATAAGATAAGGAGGGGTGGTTTTTTTAATTGAAAATTTCAATTTTTKCAGGAAGTCAAAATGGGAGAAGTCGCTTCTATATATGACAATTTCCAGTTCTTCTTTCTTCCAAAATTTTTTTTTCGAAAATCAGATTTTTTGAATTTCCCGCCAAAATCTGTCTTCTCTTCCCCCCATTGTCACCTTTTCTCGTCAGAATCGAAATTTCGTTGCATTTTATGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23403</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>107442</contig_pos>
        <strand></strand>
        <context>tcctctccac[G/A]cactctctca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAGGGGTAATCTGTCTGTGTCTCTCACTCTCTGCACTCTCTCCTCTCCAC</left_flank>
        <right_flank>CACTCTCTCACTCTCGCACTCTCTCTCTCTATCTCTCCCCTGTTCCTAGT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGCGCGTTTGCCGCAAGGAAGGGGTGGTGGCGCCGAAAAAATAGGGCCTCTTCCACGTGGCATAACTCTTCAGGGCCTAATTTTTCGAAAAAGTTGTCAATTATAAAAATAAAGCGCTAGTAATGTTTAGTGTACTTTAAAATTTTCAGAAAGTTTGAAAAAGTTTGAATTAGTTTTTAGAGAGCTCCAAAATTACCGATTTTCAACTGAAAATAAGATAAGGAGGGGTGGTTTTTTTAATTGAAAATTTCAATTTTTGCAGGAAGTCAAAATGGGAGAAGTCGCTTCTATATATGACAATTTCCAGTTCTTCTTTCTTCCAAAATTTTTTTTTCGAAAATCAGATTTTTTGAATTTCCCGCCAAAATCTGTCTTCTCTTCCCCCCATTGTCACCTTTTCTCGTCAGAATCGAAATTTCGTTGCATTTTATGTGTGGTGTGGTGGTGTAGGGGTAATCTGTCTGTGTCTCTCACTCTCTGCACTCTCTCCTCTCCACGCACTCTCTCACTCTCGCACTCTCTCTCTCTATCTCTCCCCTGTTCCTAGTTTCCAACGCCACTTTTTTGGCTGTTGGCGTTTTTAGGCCCATTTTTCGAATGTTTTTTTTTGCAATTGTCTTAAAAAATGACGAAAAAAGAAATCTGGATTTTCGGGAAATTTCAGAAAAACTCAATTCGAAAGTTCCTAACTATTCTAAGCATTTCAAATTTTAGAAAACGAAACTTTAGATATTGTCACCCCTATACTTTAAGCACAATTATCTTGGCTCCTTAAAAAGTTATCTAAAATTTGTCAATTAACAAAATGTTGGTGATTATGTGATAAACGTTTTATCAGTTGACAGTATTCTGATATCTCTAGAAGGAGCCGAGATAAACCAGCTTTTGCTTATCAGCCGCCGGTATCAACCTGTTCCTCGTCTTCCTATTCATGTGCGCCTTTAAACCAACTCAAATTTCAGCTAAAAGACGAATTTTCCGCTAAAATGCAACCCTGG</canonical>
            <polymorphic>CTAGCGCGTTTGCCGCAAGGAAGGGGTGGTGGCGCCGAAAAAATAGGGCCTCTTCCACGTGGCATAACTCTTCAGGGCCTAATTTTTCGAAAAAGTTGTCAATTATAAAAATAAAGCGCTAGTAATGTTTAGTGTACTTTAAAATTTTCAGAAAGTTTGAAAAAGTTTGAATTAGTTTTTAGAGAGCTCCAAAATTACCGATTTTCAACTGAAAATAAGATAAGGAGGGGTGGTTTTTTTAATTGAAAATTTCAATTTTTGCAGGAAGTCAAAATGGGAGAAGTCGCTTCTATATATGACAATTTCCAGTTCTTCTTTCTTCCAAAATTTTTTTTTCGAAAATCAGATTTTTTGAATTTCCCGCCAAAATCTGTCTTCTCTTCCCCCCATTGTCACCTTTTCTCGTCAGAATCGAAATTTCGTTGCATTTTATGTGTGGTGTGGTGGTGTAGGGGTAATCTGTCTGTGTCTCTCACTCTCTGCACTCTCTCCTCTCCACRCACTCTCTCACTCTCGCACTCTCTCTCTCTATCTCTCCCCTGTTCCTAGTTTCCAACGCCACTTTTTTGGCTGTTGGCGTTTTTAGGCCCATTTTTCGAATGTTTTTTTTTGCAATTGTCTTAAAAAATGACGAAAAAAGAAATCTGGATTTTCGGGAAATTTCAGAAAAACTCAATTCGAAAGTTCCTAACTATTCTAAGCATTTCAAATTTTAGAAAACGAAACTTTAGATATTGTCACCCCTATACTTTAAGCACAATTATCTTGGCTCCTTAAAAAGTTATCTAAAATTTGTCAATTAACAAAATGTTGGTGATTATGTGATAAACGTTTTATCAGTTGACAGTATTCTGATATCTCTAGAAGGAGCCGAGATAAACCAGCTTTTGCTTATCAGCCGCCGGTATCAACCTGTTCCTCGTCTTCCTATTCATGTGCGCCTTTAAACCAACTCAAATTTCAGCTAAAAGACGAATTTTCCGCTAAAATGCAACCCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTAGGGGTAATCTGTCTGTG</pcr_primer_p1>
		<pcr_primer_p2>AGTTAGGAACTTTCGAATTGAGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTGTAGGGGTAATCTGTCTGTGTCTCTCACTCTCTGCACTCTCTCCTCTCCACGCACTCTCTCACTCTCGCACTCTCTCTCTCTATCTCTCCCCTGTTCCTAGTTTCCAACGCCACTTTTTTGGCTGTTGGCGTTTTTAGGCCCATTTTTCGAATGTTTTTTTTTGCAATTGTCTTAAAAAATGACGAAAAAAGAAATCTGGATTTTCGGGAAATTTCAGAAAAACTCAATTCGAAAGTTCCTAACT</canonical_amplicon>
		<polymorphic_amplicon>GTGTAGGGGTAATCTGTCTGTGTCTCTCACTCTCTGCACTCTCTCCTCTCCACRCACTCTCTCACTCTCGCACTCTCTCTCTCTATCTCTCCCCTGTTCCTAGTTTCCAACGCCACTTTTTTGGCTGTTGGCGTTTTTAGGCCCATTTTTCGAATGTTTTTTTTTGCAATTGTCTTAAAAAATGACGAAAAAAGAAATCTGGATTTTCGGGAAATTTCAGAAAAACTCAATTCGAAAGTTCCTAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23404</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>160483</contig_pos>
        <strand>+</strand>
        <context>GAACGGGACT[C/T]AAAAAAAACC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAGTATGCACTAGACATGTCTTACTTACCGGTACTGTACGAACGGGACT</left_flank>
        <right_flank>AAAAAAAACCAACAACTCCAAAAAAAAAACTCACATCCACATCATTATGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTGGTACTGTAGCGGCACACATCACATCGGTACGGTTTGTAGCCGCAGGAGTAGGTCTCGCCACGTGCCAGCTTTGGGTGGGGTCGATTTTCGACACAGAAGATGCATTTGACCTGGAAGATTGGAATTTTTGAGTTTCAGGTTAAGTTAGGCGGTTGTGGTTACAAGCTATATTATATTTCAGGTTCAGCTTCAGTACCAGTCAAAAAAGGGCCTCTAACCCTTAGGATCATGGGATCCTAAATTAAGAATGGCCGTCCGTTTATTGTCCCAAGGTACAGTACCGGTTAACAAGATAAATATACAAAAACGTATTTTTAAGTTGATTTATTGATCGGTGCTTTAGCTATGCGGACCTTATACTTCAAATGAGCATATCTCGATTATGCTTAAAACGAATTTCATGAAATTTAGATTTTTGAATTCGGCTACTTTAGAGCTTTCAAATGAGTATGCACTAGACATGTCTTACTTACCGGTACTGTACGAACGGGACTAAAAAAAAACCAACAACTCCAAAAAAAAAACTCACATCCACATCATTATGCTTCTCCTTCATATGAATCTCCAGCGTCTCATGATACTTATAATGCCAATTACATTTCGGACATTTCAGCGTTTTCGACGAATTTCGAAGTGTCGAAAACGGCGAAATATCGGCGAATCCCAAATTTTGTGGATCAAATTGAAAATTCGCCAAACTTCCCGGGTCCTCGAATGCGGTTGCACCGCCTAGAAGTCGCTCCAGATGACATTTCGCTGTGTCGCTGGCTGAAATTTTCTGTTAATTTAAAGAAAATTTTTGGAGAATGTGGCCCCGAAAATTCCTAATCGATTGGTACAAAAATTGTAGAAAACGAAGCATTTTAAGCTGAAATATAGATATTTGACCGCGTGCTCAACAATTTAAAGTTCCATATTTCAACTTAAAATGGTCAGATCTCTATGAAAAATATAAAGGTCGATAGGAACTTTTTCAAAAGATCAATTTTCGTAAA</canonical>
            <polymorphic>TGGTGGTACTGTAGCGGCACACATCACATCGGTACGGTTTGTAGCCGCAGGAGTAGGTCTCGCCACGTGCCAGCTTTGGGTGGGGTCGATTTTCGACACAGAAGATGCATTTGACCTGGAAGATTGGAATTTTTGAGTTTCAGGTTAAGTTAGGCGGTTGTGGTTACAAGCTATATTATATTTCAGGTTCAGCTTCAGTACCAGTCAAAAAAGGGCCTCTAACCCTTAGGATCATGGGATCCTAAATTAAGAATGGCCGTCCGTTTATTGTCCCAAGGTACAGTACCGGTTAACAAGATAAATATACAAAAACGTATTTTTAAGTTGATTTATTGATCGGTGCTTTAGCTATGCGGACCTTATACTTCAAATGAGCATATCTCGATTATGCTTAAAACGAATTTCATGAAATTTAGATTTTTGAATTCGGCTACTTTAGAGCTTTCAAATGAGTATGCACTAGACATGTCTTACTTACCGGTACTGTACGAACGGGACTYAAAAAAAACCAACAACTCCAAAAAAAAAACTCACATCCACATCATTATGCTTCTCCTTCATATGAATCTCCAGCGTCTCATGATACTTATAATGCCAATTACATTTCGGACATTTCAGCGTTTTCGACGAATTTCGAAGTGTCGAAAACGGCGAAATATCGGCGAATCCCAAATTTTGTGGATCAAATTGAAAATTCGCCAAACTTCCCGGGTCCTCGAATGCGGTTGCACCGCCTAGAAGTCGCTCCAGATGACATTTCGCTGTGTCGCTGGCTGAAATTTTCTGTTAATTTAAAGAAAATTTTTGGAGAATGTGGCCCCGAAAATTCCTAATCGATTGGTACAAAAATTGTAGAAAACGAAGCATTTTAAGCTGAAATATAGATATTTGACCGCGTGCTCAACAATTTAAAGTTCCATATTTCAACTTAAAATGGTCAGATCTCTATGAAAAATATAAAGGTCGATAGGAACTTTTTCAAAAGATCAATTTTCGTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAGCTATGCGGACCTTATAC</pcr_primer_p1>
		<pcr_primer_p2>TATCATGAGACGCTGGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTAGCTATGCGGACCTTATACTTCAAATGAGCATATCTCGATTATGCTTAAAACGAATTTCATGAAATTTAGATTTTTGAATTCGGCTACTTTAGAGCTTTCAAATGAGTATGCACTAGACATGTCTTACTTACCGGTACTGTACGAACGGGACTAAAAAAAAACCAACAACTCCAAAAAAAAAACTCACATCCACATCATTATGCTTCTCCTTCATATGAATCTCCAGCGTCTCATGATA</canonical_amplicon>
		<polymorphic_amplicon>TTTAGCTATGCGGACCTTATACTTCAAATGAGCATATCTCGATTATGCTTAAAACGAATTTCATGAAATTTAGATTTTTGAATTCGGCTACTTTAGAGCTTTCAAATGAGTATGCACTAGACATGTCTTACTTACCGGTACTGTACGAACGGGACTYAAAAAAAACCAACAACTCCAAAAAAAAAACTCACATCCACATCATTATGCTTCTCCTTCATATGAATCTCCAGCGTCTCATGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23405</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>162926</contig_pos>
        <strand>+</strand>
        <context>GAATCTTGGA[G/T]TTTTTTTTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATCCGGAAGTTTGAGATTTTATGAATTTTGAGGATCTTGGAATCTTGGA</left_flank>
        <right_flank>TTTTTTTTGGAAAATTGGGGTTAAGGGAGTTCGGATTTTTGAAGTTTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGAAAGTTTTTGGCACCAGAGGTGGACCTTATGTTAGAAATTGACACCTGGTTACAACAACACATACAATTACATTTGTTTTCCTGGGATTACGGTAGCTCATAAGCCATATGGTGTACATTATCATCATCACAACTTGAGACAATGTTGTGTTCCGAGGCCCGGGGCATATGTTAGGTACTCAAAGTCAAAAAAGAGACTCTAATAGTGTCATTTTATTGGATATTCACACCTGCTGAAGAGGAGATTCTTAGATTCATAAAAGAAAATTCTAGAAGATTTTCATTGAAGTGTCGGGGGCGGAAATGGGATGAAAGGAAAAATGGGGTGGTGTAAAAATAACAAAATGGGTTTTTTGAGTTTCGAATTTCGAGAGGAAGGGCAAAAGGTAAATTTGGGAGATCAGGAATTTAGGGAATCGGATTTTTAGGGGTTTTTAAATTTAGGGATCCGGAAGTTTGAGATTTTATGAATTTTGAGGATCTTGGAATCTTGGATTTTTTTTTGGAAAATTGGGGTTAAGGGAGTTCGGATTTTTGAAGTTTTTGAGTTTTGGAGTTCCAGTTTAGGGATTTCAGGAAATTAGGAATTTCGATTTTTGGGATTTTTGGGATTTAGAGATCTAGAATTTTTGGGATATTAAAAGTTTAGGAACCTATGACGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTACTGAATTTCAGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCCGAATTTCTGAATTTCCGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTCTAAAATTCTCAATAGAAACTAAACTACAAAACTTTTACAAATAAAAACGCAATGAAAATTTTCCCCACTCCCTC</canonical>
            <polymorphic>TCGGAAAGTTTTTGGCACCAGAGGTGGACCTTATGTTAGAAATTGACACCTGGTTACAACAACACATACAATTACATTTGTTTTCCTGGGATTACGGTAGCTCATAAGCCATATGGTGTACATTATCATCATCACAACTTGAGACAATGTTGTGTTCCGAGGCCCGGGGCATATGTTAGGTACTCAAAGTCAAAAAAGAGACTCTAATAGTGTCATTTTATTGGATATTCACACCTGCTGAAGAGGAGATTCTTAGATTCATAAAAGAAAATTCTAGAAGATTTTCATTGAAGTGTCGGGGGCGGAAATGGGATGAAAGGAAAAATGGGGTGGTGTAAAAATAACAAAATGGGTTTTTTGAGTTTCGAATTTCGAGAGGAAGGGCAAAAGGTAAATTTGGGAGATCAGGAATTTAGGGAATCGGATTTTTAGGGGTTTTTAAATTTAGGGATCCGGAAGTTTGAGATTTTATGAATTTTGAGGATCTTGGAATCTTGGAKTTTTTTTTGGAAAATTGGGGTTAAGGGAGTTCGGATTTTTGAAGTTTTTGAGTTTTGGAGTTCCAGTTTAGGGATTTCAGGAAATTAGGAATTTCGATTTTTGGGATTTTTGGGATTTAGAGATCTAGAATTTTTGGGATATTAAAAGTTTAGGAACCTATGACGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTACTGAATTTCAGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCCGAATTTCTGAATTTCCGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTCTAAAATTCTCAATAGAAACTAAACTACAAAACTTTTACAAATAAAAACGCAATGAAAATTTTCCCCACTCCCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGGTGTAAAAATAACAAAATG</pcr_primer_p1>
		<pcr_primer_p2>CTAAACTGGAACTCCAAAACTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GGTGGTGTAAAAATAACAAAATGGGTTTTTTGAGTTTCGAATTTCGAGAGGAAGGGCAAAAGGTAAATTTGGGAGATCAGGAATTTAGGGAATCGGATTTTTAGGGGTTTTTAAATTTAGGGATCCGGAAGTTTGAGATTTTATGAATTTTGAGGATCTTGGAATCTTGGATTTTTTTTTGGAAAATTGGGGTTAAGGGAGTTCGGATTTTTGAAGTTTTTGAGTTTTGGAGTTCCAGTTTAG</canonical_amplicon>
		<polymorphic_amplicon>GGTGGTGTAAAAATAACAAAATGGGTTTTTTGAGTTTCGAATTTCGAGAGGAAGGGCAAAAGGTAAATTTGGGAGATCAGGAATTTAGGGAATCGGATTTTTAGGGGTTTTTAAATTTAGGGATCCGGAAGTTTGAGATTTTATGAATTTTGAGGATCTTGGAATCTTGGAKTTTTTTTTGGAAAATTGGGGTTAAGGGAGTTCGGATTTTTGAAGTTTTTGAGTTTTGGAGTTCCAGTTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23406</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>162945</contig_pos>
        <strand></strand>
        <context>GGAAAATTGG[G/T]GTTAAGGGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTATGAATTTTGAGGATCTTGGAATCTTGGATTTTTTTTTGGAAAATTGG</left_flank>
        <right_flank>GTTAAGGGAGTTCGGATTTTTGAAGTTTTTGAGTTTTGGAGTTCCAGTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGGTGGACCTTATGTTAGAAATTGACACCTGGTTACAACAACACATACAATTACATTTGTTTTCCTGGGATTACGGTAGCTCATAAGCCATATGGTGTACATTATCATCATCACAACTTGAGACAATGTTGTGTTCCGAGGCCCGGGGCATATGTTAGGTACTCAAAGTCAAAAAAGAGACTCTAATAGTGTCATTTTATTGGATATTCACACCTGCTGAAGAGGAGATTCTTAGATTCATAAAAGAAAATTCTAGAAGATTTTCATTGAAGTGTCGGGGGCGGAAATGGGATGAAAGGAAAAATGGGGTGGTGTAAAAATAACAAAATGGGTTTTTTGAGTTTCGAATTTCGAGAGGAAGGGCAAAAGGTAAATTTGGGAGATCAGGAATTTAGGGAATCGGATTTTTAGGGGTTTTTAAATTTAGGGATCCGGAAGTTTGAGATTTTATGAATTTTGAGGATCTTGGAATCTTGGATTTTTTTTTGGAAAATTGGGGTTAAGGGAGTTCGGATTTTTGAAGTTTTTGAGTTTTGGAGTTCCAGTTTAGGGATTTCAGGAAATTAGGAATTTCGATTTTTGGGATTTTTGGGATTTAGAGATCTAGAATTTTTGGGATATTAAAAGTTTAGGAACCTATGACGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTACTGAATTTCAGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCCGAATTTCTGAATTTCCGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTCTAAAATTCTCAATAGAAACTAAACTACAAAACTTTTACAAATAAAAACGCAATGAAAATTTTCCCCACTCCCTCTAAGCTCCGCCCCCTCTTC</canonical>
            <polymorphic>AGAGGTGGACCTTATGTTAGAAATTGACACCTGGTTACAACAACACATACAATTACATTTGTTTTCCTGGGATTACGGTAGCTCATAAGCCATATGGTGTACATTATCATCATCACAACTTGAGACAATGTTGTGTTCCGAGGCCCGGGGCATATGTTAGGTACTCAAAGTCAAAAAAGAGACTCTAATAGTGTCATTTTATTGGATATTCACACCTGCTGAAGAGGAGATTCTTAGATTCATAAAAGAAAATTCTAGAAGATTTTCATTGAAGTGTCGGGGGCGGAAATGGGATGAAAGGAAAAATGGGGTGGTGTAAAAATAACAAAATGGGTTTTTTGAGTTTCGAATTTCGAGAGGAAGGGCAAAAGGTAAATTTGGGAGATCAGGAATTTAGGGAATCGGATTTTTAGGGGTTTTTAAATTTAGGGATCCGGAAGTTTGAGATTTTATGAATTTTGAGGATCTTGGAATCTTGGATTTTTTTTTGGAAAATTGGKGTTAAGGGAGTTCGGATTTTTGAAGTTTTTGAGTTTTGGAGTTCCAGTTTAGGGATTTCAGGAAATTAGGAATTTCGATTTTTGGGATTTTTGGGATTTAGAGATCTAGAATTTTTGGGATATTAAAAGTTTAGGAACCTATGACGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTACTGAATTTCAGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCCGAATTTCTGAATTTCCGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTCTAAAATTCTCAATAGAAACTAAACTACAAAACTTTTACAAATAAAAACGCAATGAAAATTTTCCCCACTCCCTCTAAGCTCCGCCCCCTCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGGTGTAAAAATAACAAAATG</pcr_primer_p1>
		<pcr_primer_p2>CCTAAACTGGAACTCCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GGTGGTGTAAAAATAACAAAATGGGTTTTTTGAGTTTCGAATTTCGAGAGGAAGGGCAAAAGGTAAATTTGGGAGATCAGGAATTTAGGGAATCGGATTTTTAGGGGTTTTTAAATTTAGGGATCCGGAAGTTTGAGATTTTATGAATTTTGAGGATCTTGGAATCTTGGATTTTTTTTTGGAAAATTGGGGTTAAGGGAGTTCGGATTTTTGAAGTTTTTGAGTTTTGGAGTTCCAGTTTAGG</canonical_amplicon>
		<polymorphic_amplicon>GGTGGTGTAAAAATAACAAAATGGGTTTTTTGAGTTTCGAATTTCGAGAGGAAGGGCAAAAGGTAAATTTGGGAGATCAGGAATTTAGGGAATCGGATTTTTAGGGGTTTTTAAATTTAGGGATCCGGAAGTTTGAGATTTTATGAATTTTGAGGATCTTGGAATCTTGGATTTTTTTTTGGAAAATTGGKGTTAAGGGAGTTCGGATTTTTGAAGTTTTTGAGTTTTGGAGTTCCAGTTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23407</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>163002</contig_pos>
        <strand></strand>
        <context>GTTTAGGGAT[T/A]TCAGGAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GGAGTTCGGATTTTTGAAGTTTTTGAGTTTTGGAGTTCCAGTTTAGGGAT</left_flank>
        <right_flank>TCAGGAAATTAGGAATTTCGATTTTTGGGATTTTTGGGATTTAGAGATCT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGTTTTCCTGGGATTACGGTAGCTCATAAGCCATATGGTGTACATTATCATCATCACAACTTGAGACAATGTTGTGTTCCGAGGCCCGGGGCATATGTTAGGTACTCAAAGTCAAAAAAGAGACTCTAATAGTGTCATTTTATTGGATATTCACACCTGCTGAAGAGGAGATTCTTAGATTCATAAAAGAAAATTCTAGAAGATTTTCATTGAAGTGTCGGGGGCGGAAATGGGATGAAAGGAAAAATGGGGTGGTGTAAAAATAACAAAATGGGTTTTTTGAGTTTCGAATTTCGAGAGGAAGGGCAAAAGGTAAATTTGGGAGATCAGGAATTTAGGGAATCGGATTTTTAGGGGTTTTTAAATTTAGGGATCCGGAAGTTTGAGATTTTATGAATTTTGAGGATCTTGGAATCTTGGATTTTTTTTTGGAAAATTGGGGTTAAGGGAGTTCGGATTTTTGAAGTTTTTGAGTTTTGGAGTTCCAGTTTAGGGATTTCAGGAAATTAGGAATTTCGATTTTTGGGATTTTTGGGATTTAGAGATCTAGAATTTTTGGGATATTAAAAGTTTAGGAACCTATGACGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTACTGAATTTCAGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCCGAATTTCTGAATTTCCGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTCTAAAATTCTCAATAGAAACTAAACTACAAAACTTTTACAAATAAAAACGCAATGAAAATTTTCCCCACTCCCTCTAAGCTCCGCCCCCTCTTCTCCCCATCCCTCGATGCTCGTTATAACTGGCTGATTAAGCATTCGAGAGGAGCACCG</canonical>
            <polymorphic>TTTGTTTTCCTGGGATTACGGTAGCTCATAAGCCATATGGTGTACATTATCATCATCACAACTTGAGACAATGTTGTGTTCCGAGGCCCGGGGCATATGTTAGGTACTCAAAGTCAAAAAAGAGACTCTAATAGTGTCATTTTATTGGATATTCACACCTGCTGAAGAGGAGATTCTTAGATTCATAAAAGAAAATTCTAGAAGATTTTCATTGAAGTGTCGGGGGCGGAAATGGGATGAAAGGAAAAATGGGGTGGTGTAAAAATAACAAAATGGGTTTTTTGAGTTTCGAATTTCGAGAGGAAGGGCAAAAGGTAAATTTGGGAGATCAGGAATTTAGGGAATCGGATTTTTAGGGGTTTTTAAATTTAGGGATCCGGAAGTTTGAGATTTTATGAATTTTGAGGATCTTGGAATCTTGGATTTTTTTTTGGAAAATTGGGGTTAAGGGAGTTCGGATTTTTGAAGTTTTTGAGTTTTGGAGTTCCAGTTTAGGGATWTCAGGAAATTAGGAATTTCGATTTTTGGGATTTTTGGGATTTAGAGATCTAGAATTTTTGGGATATTAAAAGTTTAGGAACCTATGACGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTACTGAATTTCAGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCCGAATTTCTGAATTTCCGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTCTAAAATTCTCAATAGAAACTAAACTACAAAACTTTTACAAATAAAAACGCAATGAAAATTTTCCCCACTCCCTCTAAGCTCCGCCCCCTCTTCTCCCCATCCCTCGATGCTCGTTATAACTGGCTGATTAAGCATTCGAGAGGAGCACCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGGTGTAAAAATAACAAAATG</pcr_primer_p1>
		<pcr_primer_p2>ATTCTAGATCTCTAAATCCCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>GGTGGTGTAAAAATAACAAAATGGGTTTTTTGAGTTTCGAATTTCGAGAGGAAGGGCAAAAGGTAAATTTGGGAGATCAGGAATTTAGGGAATCGGATTTTTAGGGGTTTTTAAATTTAGGGATCCGGAAGTTTGAGATTTTATGAATTTTGAGGATCTTGGAATCTTGGATTTTTTTTTGGAAAATTGGGGTTAAGGGAGTTCGGATTTTTGAAGTTTTTGAGTTTTGGAGTTCCAGTTTAGGGATTTCAGGAAATTAGGAATTTCGATTTTTGGGATTTTTGGGATTTAGAGATCTAGAAT</canonical_amplicon>
		<polymorphic_amplicon>GGTGGTGTAAAAATAACAAAATGGGTTTTTTGAGTTTCGAATTTCGAGAGGAAGGGCAAAAGGTAAATTTGGGAGATCAGGAATTTAGGGAATCGGATTTTTAGGGGTTTTTAAATTTAGGGATCCGGAAGTTTGAGATTTTATGAATTTTGAGGATCTTGGAATCTTGGATTTTTTTTTGGAAAATTGGGGTTAAGGGAGTTCGGATTTTTGAAGTTTTTGAGTTTTGGAGTTCCAGTTTAGGGATWTCAGGAAATTAGGAATTTCGATTTTTGGGATTTTTGGGATTTAGAGATCTAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23408</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>181035</contig_pos>
        <strand></strand>
        <context>gcttttttaa[G/A]gcttcaaaac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTTATCCAATTTTTTTGAAACTGATATTTTTGGGTTGAGCTTTTTTAA</left_flank>
        <right_flank>GCTTCAAAACAATTATAAATATGCCTGGTTTGGAATTGGTCCATGCCGCT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTAAAAATAAAGATTTCAAGACTAGAAACGGAATTGTGAAGACAGTAAAGAGGCTGAGGATCCAAAGTACAAACTTTCCAATAAAAAAAGTTCCAACATGGCCAAAAACGTAAGGTGTTTTTCAAAATAAGGGACTAGTCTCCTTTCTGATTGAAAAAATATGGGTTCACCAGAGCATTATGTTCTTATAAGGCAGATTAAATTGTAACACATAGATTAGGATCTGGGAGGGGGGGGGGGGTCCACCTGGCCTTTGTATTTTGATTATGTAATGGTCCAGGTACCAAGCACACTCCCCTTTTTAGTTATGGTTCGAGTATCTATATTTTCTTAAGGACATAAACTTATCTGCAGCATATCAGGGTCACCGCCCCGCTACCAGCTGAGCTATACGGGCACAGTCTTTAAGCTAGACTGTTTTTTTCAAACAGTCATATCTCGCTTAGTTTTTATCCAATTTTTTTGAAACTGATATTTTTGGGTTGAGCTTTTTTAAGGCTTCAAAACAATTATAAATATGCCTGGTTTGGAATTGGTCCATGCCGCTATCGGATGAGCTACGGTGTCCACTGGGTTAGCTACGCAGCCGACAGATCCTGTATTTATGTAGGTGTTTCGAAAACTATCTCATATTTTTTCAATTCATTTGAAAATTTCAGAGTATACTAAAAAAAAACTGGAGCTTTTATTTTGTAATTGAAAAGTTTTAGGCAAAACTAGGCCCTGGAGAGATATGCCACGTGGAAGAGCCTTGCTTTTTTGGCGCCAGCGCCCTGTTGAAGGGGGGGGGGGGCGCCGCGAAGGAGGGTCTTTCCCACGTGGCATATCCCGTCAGGTTCAAATTTTTCAAGTCAGTTGTCAATTATAAAAATAAAGCTCGATTTTTGTTTGGTTTACTCTGAAAAACTCAAAAAAATCCGACAACTTTACACTACCTTTTTAGACGCTTGAAATCGACCATCTTTTGACATTATCCGCCAAAAATTAACAAATTTCA</canonical>
            <polymorphic>TATTTAAAAATAAAGATTTCAAGACTAGAAACGGAATTGTGAAGACAGTAAAGAGGCTGAGGATCCAAAGTACAAACTTTCCAATAAAAAAAGTTCCAACATGGCCAAAAACGTAAGGTGTTTTTCAAAATAAGGGACTAGTCTCCTTTCTGATTGAAAAAATATGGGTTCACCAGAGCATTATGTTCTTATAAGGCAGATTAAATTGTAACACATAGATTAGGATCTGGGAGGGGGGGGGGGGTCCACCTGGCCTTTGTATTTTGATTATGTAATGGTCCAGGTACCAAGCACACTCCCCTTTTTAGTTATGGTTCGAGTATCTATATTTTCTTAAGGACATAAACTTATCTGCAGCATATCAGGGTCACCGCCCCGCTACCAGCTGAGCTATACGGGCACAGTCTTTAAGCTAGACTGTTTTTTTCAAACAGTCATATCTCGCTTAGTTTTTATCCAATTTTTTTGAAACTGATATTTTTGGGTTGAGCTTTTTTAARGCTTCAAAACAATTATAAATATGCCTGGTTTGGAATTGGTCCATGCCGCTATCGGATGAGCTACGGTGTCCACTGGGTTAGCTACGCAGCCGACAGATCCTGTATTTATGTAGGTGTTTCGAAAACTATCTCATATTTTTTCAATTCATTTGAAAATTTCAGAGTATACTAAAAAAAAACTGGAGCTTTTATTTTGTAATTGAAAAGTTTTAGGCAAAACTAGGCCCTGGAGAGATATGCCACGTGGAAGAGCCTTGCTTTTTTGGCGCCAGCGCCCTGTTGAAGGGGGGGGGGGGCGCCGCGAAGGAGGGTCTTTCCCACGTGGCATATCCCGTCAGGTTCAAATTTTTCAAGTCAGTTGTCAATTATAAAAATAAAGCTCGATTTTTGTTTGGTTTACTCTGAAAAACTCAAAAAAATCCGACAACTTTACACTACCTTTTTAGACGCTTGAAATCGACCATCTTTTGACATTATCCGCCAAAAATTAACAAATTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>149 132 127 121 96 78 59 56 48 39 28 22 21 11 8 5</canonical_bands>
                <polymorphic_bands>149 132 127 121 96 78 70 56 48 39 28 22 21 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTTTTAGTTATGGTTCGAGTA</pcr_primer_p1>
		<pcr_primer_p2>GCGGATAATGTCAAAAGATG</pcr_primer_p2>
		<pcr_amplicon_size>682</pcr_amplicon_size>
		<canonical_amplicon>CCTTTTTAGTTATGGTTCGAGTATCTATATTTTCTTAAGGACATAAACTTATCTGCAGCATATCAGGGTCACCGCCCCGCTACCAGCTGAGCTATACGGGCACAGTCTTTAAGCTAGACTGTTTTTTTCAAACAGTCATATCTCGCTTAGTTTTTATCCAATTTTTTTGAAACTGATATTTTTGGGTTGAGCTTTTTTAAGGCTTCAAAACAATTATAAATATGCCTGGTTTGGAATTGGTCCATGCCGCTATCGGATGAGCTACGGTGTCCACTGGGTTAGCTACGCAGCCGACAGATCCTGTATTTATGTAGGTGTTTCGAAAACTATCTCATATTTTTTCAATTCATTTGAAAATTTCAGAGTATACTAAAAAAAAACTGGAGCTTTTATTTTGTAATTGAAAAGTTTTAGGCAAAACTAGGCCCTGGAGAGATATGCCACGTGGAAGAGCCTTGCTTTTTTGGCGCCAGCGCCCTGTTGAAGGGGGGGGGGGGCGCCGCGAAGGAGGGTCTTTCCCACGTGGCATATCCCGTCAGGTTCAAATTTTTCAAGTCAGTTGTCAATTATAAAAATAAAGCTCGATTTTTGTTTGGTTTACTCTGAAAAACTCAAAAAAATCCGACAACTTTACACTACCTTTTTAGACGCTTGAAATCGACCATCTTTTGACATTATCCGC</canonical_amplicon>
		<polymorphic_amplicon>CCTTTTTAGTTATGGTTCGAGTATCTATATTTTCTTAAGGACATAAACTTATCTGCAGCATATCAGGGTCACCGCCCCGCTACCAGCTGAGCTATACGGGCACAGTCTTTAAGCTAGACTGTTTTTTTCAAACAGTCATATCTCGCTTAGTTTTTATCCAATTTTTTTGAAACTGATATTTTTGGGTTGAGCTTTTTTAARGCTTCAAAACAATTATAAATATGCCTGGTTTGGAATTGGTCCATGCCGCTATCGGATGAGCTACGGTGTCCACTGGGTTAGCTACGCAGCCGACAGATCCTGTATTTATGTAGGTGTTTCGAAAACTATCTCATATTTTTTCAATTCATTTGAAAATTTCAGAGTATACTAAAAAAAAACTGGAGCTTTTATTTTGTAATTGAAAAGTTTTAGGCAAAACTAGGCCCTGGAGAGATATGCCACGTGGAAGAGCCTTGCTTTTTTGGCGCCAGCGCCCTGTTGAAGGGGGGGGGGGGCGCCGCGAAGGAGGGTCTTTCCCACGTGGCATATCCCGTCAGGTTCAAATTTTTCAAGTCAGTTGTCAATTATAAAAATAAAGCTCGATTTTTGTTTGGTTTACTCTGAAAAACTCAAAAAAATCCGACAACTTTACACTACCTTTTTAGACGCTTGAAATCGACCATCTTTTGACATTATCCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23409</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>181048</contig_pos>
        <strand></strand>
        <context>ttcaaaacaa[T/A]tataaatatg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTTTGAAACTGATATTTTTGGGTTGAGCTTTTTTAAGGCTTCAAAACAA</left_flank>
        <right_flank>TATAAATATGCCTGGTTTGGAATTGGTCCATGCCGCTATCGGATGAGCTA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATTTCAAGACTAGAAACGGAATTGTGAAGACAGTAAAGAGGCTGAGGATCCAAAGTACAAACTTTCCAATAAAAAAAGTTCCAACATGGCCAAAAACGTAAGGTGTTTTTCAAAATAAGGGACTAGTCTCCTTTCTGATTGAAAAAATATGGGTTCACCAGAGCATTATGTTCTTATAAGGCAGATTAAATTGTAACACATAGATTAGGATCTGGGAGGGGGGGGGGGGTCCACCTGGCCTTTGTATTTTGATTATGTAATGGTCCAGGTACCAAGCACACTCCCCTTTTTAGTTATGGTTCGAGTATCTATATTTTCTTAAGGACATAAACTTATCTGCAGCATATCAGGGTCACCGCCCCGCTACCAGCTGAGCTATACGGGCACAGTCTTTAAGCTAGACTGTTTTTTTCAAACAGTCATATCTCGCTTAGTTTTTATCCAATTTTTTTGAAACTGATATTTTTGGGTTGAGCTTTTTTAAGGCTTCAAAACAATTATAAATATGCCTGGTTTGGAATTGGTCCATGCCGCTATCGGATGAGCTACGGTGTCCACTGGGTTAGCTACGCAGCCGACAGATCCTGTATTTATGTAGGTGTTTCGAAAACTATCTCATATTTTTTCAATTCATTTGAAAATTTCAGAGTATACTAAAAAAAAACTGGAGCTTTTATTTTGTAATTGAAAAGTTTTAGGCAAAACTAGGCCCTGGAGAGATATGCCACGTGGAAGAGCCTTGCTTTTTTGGCGCCAGCGCCCTGTTGAAGGGGGGGGGGGGCGCCGCGAAGGAGGGTCTTTCCCACGTGGCATATCCCGTCAGGTTCAAATTTTTCAAGTCAGTTGTCAATTATAAAAATAAAGCTCGATTTTTGTTTGGTTTACTCTGAAAAACTCAAAAAAATCCGACAACTTTACACTACCTTTTTAGACGCTTGAAATCGACCATCTTTTGACATTATCCGCCAAAAATTAACAAATTTCAAGTCGAATTTCAG</canonical>
            <polymorphic>AGATTTCAAGACTAGAAACGGAATTGTGAAGACAGTAAAGAGGCTGAGGATCCAAAGTACAAACTTTCCAATAAAAAAAGTTCCAACATGGCCAAAAACGTAAGGTGTTTTTCAAAATAAGGGACTAGTCTCCTTTCTGATTGAAAAAATATGGGTTCACCAGAGCATTATGTTCTTATAAGGCAGATTAAATTGTAACACATAGATTAGGATCTGGGAGGGGGGGGGGGGTCCACCTGGCCTTTGTATTTTGATTATGTAATGGTCCAGGTACCAAGCACACTCCCCTTTTTAGTTATGGTTCGAGTATCTATATTTTCTTAAGGACATAAACTTATCTGCAGCATATCAGGGTCACCGCCCCGCTACCAGCTGAGCTATACGGGCACAGTCTTTAAGCTAGACTGTTTTTTTCAAACAGTCATATCTCGCTTAGTTTTTATCCAATTTTTTTGAAACTGATATTTTTGGGTTGAGCTTTTTTAAGGCTTCAAAACAAWTATAAATATGCCTGGTTTGGAATTGGTCCATGCCGCTATCGGATGAGCTACGGTGTCCACTGGGTTAGCTACGCAGCCGACAGATCCTGTATTTATGTAGGTGTTTCGAAAACTATCTCATATTTTTTCAATTCATTTGAAAATTTCAGAGTATACTAAAAAAAAACTGGAGCTTTTATTTTGTAATTGAAAAGTTTTAGGCAAAACTAGGCCCTGGAGAGATATGCCACGTGGAAGAGCCTTGCTTTTTTGGCGCCAGCGCCCTGTTGAAGGGGGGGGGGGGCGCCGCGAAGGAGGGTCTTTCCCACGTGGCATATCCCGTCAGGTTCAAATTTTTCAAGTCAGTTGTCAATTATAAAAATAAAGCTCGATTTTTGTTTGGTTTACTCTGAAAAACTCAAAAAAATCCGACAACTTTACACTACCTTTTTAGACGCTTGAAATCGACCATCTTTTGACATTATCCGCCAAAAATTAACAAATTTCAAGTCGAATTTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>353 324 178 145</canonical_bands>
                <polymorphic_bands>677 178 145</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>255 169 146 122 109 52 43 23 21 20 12 12 8 8</canonical_bands>
                <polymorphic_bands>255 169 146 122 109 75 43 21 20 12 12 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTTTTAGTTATGGTTCGAGTA</pcr_primer_p1>
		<pcr_primer_p2>GCGGATAATGTCAAAAGATG</pcr_primer_p2>
		<pcr_amplicon_size>682</pcr_amplicon_size>
		<canonical_amplicon>CCTTTTTAGTTATGGTTCGAGTATCTATATTTTCTTAAGGACATAAACTTATCTGCAGCATATCAGGGTCACCGCCCCGCTACCAGCTGAGCTATACGGGCACAGTCTTTAAGCTAGACTGTTTTTTTCAAACAGTCATATCTCGCTTAGTTTTTATCCAATTTTTTTGAAACTGATATTTTTGGGTTGAGCTTTTTTAAGGCTTCAAAACAATTATAAATATGCCTGGTTTGGAATTGGTCCATGCCGCTATCGGATGAGCTACGGTGTCCACTGGGTTAGCTACGCAGCCGACAGATCCTGTATTTATGTAGGTGTTTCGAAAACTATCTCATATTTTTTCAATTCATTTGAAAATTTCAGAGTATACTAAAAAAAAACTGGAGCTTTTATTTTGTAATTGAAAAGTTTTAGGCAAAACTAGGCCCTGGAGAGATATGCCACGTGGAAGAGCCTTGCTTTTTTGGCGCCAGCGCCCTGTTGAAGGGGGGGGGGGGCGCCGCGAAGGAGGGTCTTTCCCACGTGGCATATCCCGTCAGGTTCAAATTTTTCAAGTCAGTTGTCAATTATAAAAATAAAGCTCGATTTTTGTTTGGTTTACTCTGAAAAACTCAAAAAAATCCGACAACTTTACACTACCTTTTTAGACGCTTGAAATCGACCATCTTTTGACATTATCCGC</canonical_amplicon>
		<polymorphic_amplicon>CCTTTTTAGTTATGGTTCGAGTATCTATATTTTCTTAAGGACATAAACTTATCTGCAGCATATCAGGGTCACCGCCCCGCTACCAGCTGAGCTATACGGGCACAGTCTTTAAGCTAGACTGTTTTTTTCAAACAGTCATATCTCGCTTAGTTTTTATCCAATTTTTTTGAAACTGATATTTTTGGGTTGAGCTTTTTTAAGGCTTCAAAACAAWTATAAATATGCCTGGTTTGGAATTGGTCCATGCCGCTATCGGATGAGCTACGGTGTCCACTGGGTTAGCTACGCAGCCGACAGATCCTGTATTTATGTAGGTGTTTCGAAAACTATCTCATATTTTTTCAATTCATTTGAAAATTTCAGAGTATACTAAAAAAAAACTGGAGCTTTTATTTTGTAATTGAAAAGTTTTAGGCAAAACTAGGCCCTGGAGAGATATGCCACGTGGAAGAGCCTTGCTTTTTTGGCGCCAGCGCCCTGTTGAAGGGGGGGGGGGGCGCCGCGAAGGAGGGTCTTTCCCACGTGGCATATCCCGTCAGGTTCAAATTTTTCAAGTCAGTTGTCAATTATAAAAATAAAGCTCGATTTTTGTTTGGTTTACTCTGAAAAACTCAAAAAAATCCGACAACTTTACACTACCTTTTTAGACGCTTGAAATCGACCATCTTTTGACATTATCCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23410</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>181274</contig_pos>
        <strand></strand>
        <context>ggagagatat[G/C]ccacgtsgaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TTATTTTGTAATTGAAAAGTTTTAGGCAAAACTAGGCCCTGGAGAGATAT</left_flank>
        <right_flank>CCACGTGGAAGAGCCTTGCTTTTTTGGCGCCAGCGCCCTGTTGAAGGGGG</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGGGTCCACCTGGCCTTTGTATTTTGATTATGTAATGGTCCAGGTACCAAGCACACTCCCCTTTTTAGTTATGGTTCGAGTATCTATATTTTCTTAAGGACATAAACTTATCTGCAGCATATCAGGGTCACCGCCCCGCTACCAGCTGAGCTATACGGGCACAGTCTTTAAGCTAGACTGTTTTTTTCAAACAGTCATATCTCGCTTAGTTTTTATCCAATTTTTTTGAAACTGATATTTTTGGGTTGAGCTTTTTTAAGGCTTCAAAACAATTATAAATATGCCTGGTTTGGAATTGGTCCATGCCGCTATCGGATGAGCTACGGTGTCCACTGGGTTAGCTACGCAGCCGACAGATCCTGTATTTATGTAGGTGTTTCGAAAACTATCTCATATTTTTTCAATTCATTTGAAAATTTCAGAGTATACTAAAAAAAAACTGGAGCTTTTATTTTGTAATTGAAAAGTTTTAGGCAAAACTAGGCCCTGGAGAGATATGCCACGTGGAAGAGCCTTGCTTTTTTGGCGCCAGCGCCCTGTTGAAGGGGGGGGGGGGCGCCGCGAAGGAGGGTCTTTCCCACGTGGCATATCCCGTCAGGTTCAAATTTTTCAAGTCAGTTGTCAATTATAAAAATAAAGCTCGATTTTTGTTTGGTTTACTCTGAAAAACTCAAAAAAATCCGACAACTTTACACTACCTTTTTAGACGCTTGAAATCGACCATCTTTTGACATTATCCGCCAAAAATTAACAAATTTCAAGTCGAATTTCAGCCTCAAAAACAGAGCTTCCCATTTGTTAGATTTGTCTGAAAAGGTCAAAATGTACTAAACAATACTAGAGCTTGAATTTTGTAGTGGACAACTTTTTTCTAAAATTAGGACATGAGGAGATATGTCACCTAGAATGACCCTATGCGCCTTTAAACGAGCCAAAAGATCATGGCTCGGTTATTTTTAGACCGATTTCTATGAAATTTAGATTTTTGAAAACCTTAAA</canonical>
            <polymorphic>GGGGGTCCACCTGGCCTTTGTATTTTGATTATGTAATGGTCCAGGTACCAAGCACACTCCCCTTTTTAGTTATGGTTCGAGTATCTATATTTTCTTAAGGACATAAACTTATCTGCAGCATATCAGGGTCACCGCCCCGCTACCAGCTGAGCTATACGGGCACAGTCTTTAAGCTAGACTGTTTTTTTCAAACAGTCATATCTCGCTTAGTTTTTATCCAATTTTTTTGAAACTGATATTTTTGGGTTGAGCTTTTTTAAGGCTTCAAAACAATTATAAATATGCCTGGTTTGGAATTGGTCCATGCCGCTATCGGATGAGCTACGGTGTCCACTGGGTTAGCTACGCAGCCGACAGATCCTGTATTTATGTAGGTGTTTCGAAAACTATCTCATATTTTTTCAATTCATTTGAAAATTTCAGAGTATACTAAAAAAAAACTGGAGCTTTTATTTTGTAATTGAAAAGTTTTAGGCAAAACTAGGCCCTGGAGAGATATSCCACGTGGAAGAGCCTTGCTTTTTTGGCGCCAGCGCCCTGTTGAAGGGGGGGGGGGGCGCCGCGAAGGAGGGTCTTTCCCACGTGGCATATCCCGTCAGGTTCAAATTTTTCAAGTCAGTTGTCAATTATAAAAATAAAGCTCGATTTTTGTTTGGTTTACTCTGAAAAACTCAAAAAAATCCGACAACTTTACACTACCTTTTTAGACGCTTGAAATCGACCATCTTTTGACATTATCCGCCAAAAATTAACAAATTTCAAGTCGAATTTCAGCCTCAAAAACAGAGCTTCCCATTTGTTAGATTTGTCTGAAAAGGTCAAAATGTACTAAACAATACTAGAGCTTGAATTTTGTAGTGGACAACTTTTTTCTAAAATTAGGACATGAGGAGATATGTCACCTAGAATGACCCTATGCGCCTTTAAACGAGCCAAAAGATCATGGCTCGGTTATTTTTAGACCGATTTCTATGAAATTTAGATTTTTGAAAACCTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGACAGATCCTGTATTTATGTA</pcr_primer_p1>
		<pcr_primer_p2>GCGGATAATGTCAAAAGATG</pcr_primer_p2>
		<pcr_amplicon_size>392</pcr_amplicon_size>
		<canonical_amplicon>CCGACAGATCCTGTATTTATGTAGGTGTTTCGAAAACTATCTCATATTTTTTCAATTCATTTGAAAATTTCAGAGTATACTAAAAAAAAACTGGAGCTTTTATTTTGTAATTGAAAAGTTTTAGGCAAAACTAGGCCCTGGAGAGATATGCCACGTGGAAGAGCCTTGCTTTTTTGGCGCCAGCGCCCTGTTGAAGGGGGGGGGGGGCGCCGCGAAGGAGGGTCTTTCCCACGTGGCATATCCCGTCAGGTTCAAATTTTTCAAGTCAGTTGTCAATTATAAAAATAAAGCTCGATTTTTGTTTGGTTTACTCTGAAAAACTCAAAAAAATCCGACAACTTTACACTACCTTTTTAGACGCTTGAAATCGACCATCTTTTGACATTATCCGC</canonical_amplicon>
		<polymorphic_amplicon>CCGACAGATCCTGTATTTATGTAGGTGTTTCGAAAACTATCTCATATTTTTTCAATTCATTTGAAAATTTCAGAGTATACTAAAAAAAAACTGGAGCTTTTATTTTGTAATTGAAAAGTTTTAGGCAAAACTAGGCCCTGGAGAGATATSCCACGTGGAAGAGCCTTGCTTTTTTGGCGCCAGCGCCCTGTTGAAGGGGGGGGGGGGCGCCGCGAAGGAGGGTCTTTCCCACGTGGCATATCCCGTCAGGTTCAAATTTTTCAAGTCAGTTGTCAATTATAAAAATAAAGCTCGATTTTTGTTTGGTTTACTCTGAAAAACTCAAAAAAATCCGACAACTTTACACTACCTTTTTAGACGCTTGAAATCGACCATCTTTTGACATTATCCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23411</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>181281</contig_pos>
        <strand></strand>
        <context>tatsccacgt[G/C]gaagagcctt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GTAATTGAAAAGTTTTAGGCAAAACTAGGCCCTGGAGAGATATGCCACGT</left_flank>
        <right_flank>GAAGAGCCTTGCTTTTTTGGCGCCAGCGCCCTGTTGAAGGGGGGGGGGGG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACCTGGCCTTTGTATTTTGATTATGTAATGGTCCAGGTACCAAGCACACTCCCCTTTTTAGTTATGGTTCGAGTATCTATATTTTCTTAAGGACATAAACTTATCTGCAGCATATCAGGGTCACCGCCCCGCTACCAGCTGAGCTATACGGGCACAGTCTTTAAGCTAGACTGTTTTTTTCAAACAGTCATATCTCGCTTAGTTTTTATCCAATTTTTTTGAAACTGATATTTTTGGGTTGAGCTTTTTTAAGGCTTCAAAACAATTATAAATATGCCTGGTTTGGAATTGGTCCATGCCGCTATCGGATGAGCTACGGTGTCCACTGGGTTAGCTACGCAGCCGACAGATCCTGTATTTATGTAGGTGTTTCGAAAACTATCTCATATTTTTTCAATTCATTTGAAAATTTCAGAGTATACTAAAAAAAAACTGGAGCTTTTATTTTGTAATTGAAAAGTTTTAGGCAAAACTAGGCCCTGGAGAGATATGCCACGTGGAAGAGCCTTGCTTTTTTGGCGCCAGCGCCCTGTTGAAGGGGGGGGGGGGCGCCGCGAAGGAGGGTCTTTCCCACGTGGCATATCCCGTCAGGTTCAAATTTTTCAAGTCAGTTGTCAATTATAAAAATAAAGCTCGATTTTTGTTTGGTTTACTCTGAAAAACTCAAAAAAATCCGACAACTTTACACTACCTTTTTAGACGCTTGAAATCGACCATCTTTTGACATTATCCGCCAAAAATTAACAAATTTCAAGTCGAATTTCAGCCTCAAAAACAGAGCTTCCCATTTGTTAGATTTGTCTGAAAAGGTCAAAATGTACTAAACAATACTAGAGCTTGAATTTTGTAGTGGACAACTTTTTTCTAAAATTAGGACATGAGGAGATATGTCACCTAGAATGACCCTATGCGCCTTTAAACGAGCCAAAAGATCATGGCTCGGTTATTTTTAGACCGATTTCTATGAAATTTAGATTTTTGAAAACCTTAAAAGTTAGA</canonical>
            <polymorphic>CACCTGGCCTTTGTATTTTGATTATGTAATGGTCCAGGTACCAAGCACACTCCCCTTTTTAGTTATGGTTCGAGTATCTATATTTTCTTAAGGACATAAACTTATCTGCAGCATATCAGGGTCACCGCCCCGCTACCAGCTGAGCTATACGGGCACAGTCTTTAAGCTAGACTGTTTTTTTCAAACAGTCATATCTCGCTTAGTTTTTATCCAATTTTTTTGAAACTGATATTTTTGGGTTGAGCTTTTTTAAGGCTTCAAAACAATTATAAATATGCCTGGTTTGGAATTGGTCCATGCCGCTATCGGATGAGCTACGGTGTCCACTGGGTTAGCTACGCAGCCGACAGATCCTGTATTTATGTAGGTGTTTCGAAAACTATCTCATATTTTTTCAATTCATTTGAAAATTTCAGAGTATACTAAAAAAAAACTGGAGCTTTTATTTTGTAATTGAAAAGTTTTAGGCAAAACTAGGCCCTGGAGAGATATGCCACGTSGAAGAGCCTTGCTTTTTTGGCGCCAGCGCCCTGTTGAAGGGGGGGGGGGGCGCCGCGAAGGAGGGTCTTTCCCACGTGGCATATCCCGTCAGGTTCAAATTTTTCAAGTCAGTTGTCAATTATAAAAATAAAGCTCGATTTTTGTTTGGTTTACTCTGAAAAACTCAAAAAAATCCGACAACTTTACACTACCTTTTTAGACGCTTGAAATCGACCATCTTTTGACATTATCCGCCAAAAATTAACAAATTTCAAGTCGAATTTCAGCCTCAAAAACAGAGCTTCCCATTTGTTAGATTTGTCTGAAAAGGTCAAAATGTACTAAACAATACTAGAGCTTGAATTTTGTAGTGGACAACTTTTTTCTAAAATTAGGACATGAGGAGATATGTCACCTAGAATGACCCTATGCGCCTTTAAACGAGCCAAAAGATCATGGCTCGGTTATTTTTAGACCGATTTCTATGAAATTTAGATTTTTGAAAACCTTAAAAGTTAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACGTG</site>
                <isoschizomers>
                    <enzyme>AcvI</enzyme>
                    <enzyme>BbrPI</enzyme>
                    <enzyme>Eco72I</enzyme>
                    <enzyme>PmaCI</enzyme>
                    <enzyme>PmlI</enzyme>
                </isoschizomers>
                <canonical_bands>497 425 78</canonical_bands>
                <polymorphic_bands>575 425</polymorphic_bands>
            </assay>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>497 425 78</canonical_bands>
                <polymorphic_bands>575 425</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>167 165 126 110 106 75 74 45 44 41 31 4 4 4 2 2</canonical_bands>
                <polymorphic_bands>167 165 126 110 106 78 75 45 44 41 31 4 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGACAGATCCTGTATTTATGTA</pcr_primer_p1>
		<pcr_primer_p2>GCGGATAATGTCAAAAGATG</pcr_primer_p2>
		<pcr_amplicon_size>392</pcr_amplicon_size>
		<canonical_amplicon>CCGACAGATCCTGTATTTATGTAGGTGTTTCGAAAACTATCTCATATTTTTTCAATTCATTTGAAAATTTCAGAGTATACTAAAAAAAAACTGGAGCTTTTATTTTGTAATTGAAAAGTTTTAGGCAAAACTAGGCCCTGGAGAGATATGCCACGTGGAAGAGCCTTGCTTTTTTGGCGCCAGCGCCCTGTTGAAGGGGGGGGGGGGCGCCGCGAAGGAGGGTCTTTCCCACGTGGCATATCCCGTCAGGTTCAAATTTTTCAAGTCAGTTGTCAATTATAAAAATAAAGCTCGATTTTTGTTTGGTTTACTCTGAAAAACTCAAAAAAATCCGACAACTTTACACTACCTTTTTAGACGCTTGAAATCGACCATCTTTTGACATTATCCGC</canonical_amplicon>
		<polymorphic_amplicon>CCGACAGATCCTGTATTTATGTAGGTGTTTCGAAAACTATCTCATATTTTTTCAATTCATTTGAAAATTTCAGAGTATACTAAAAAAAAACTGGAGCTTTTATTTTGTAATTGAAAAGTTTTAGGCAAAACTAGGCCCTGGAGAGATATGCCACGTSGAAGAGCCTTGCTTTTTTGGCGCCAGCGCCCTGTTGAAGGGGGGGGGGGGCGCCGCGAAGGAGGGTCTTTCCCACGTGGCATATCCCGTCAGGTTCAAATTTTTCAAGTCAGTTGTCAATTATAAAAATAAAGCTCGATTTTTGTTTGGTTTACTCTGAAAAACTCAAAAAAATCCGACAACTTTACACTACCTTTTTAGACGCTTGAAATCGACCATCTTTTGACATTATCCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23412</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>183005</contig_pos>
        <strand>+</strand>
        <context>AATCTGATGA[A/G]RTTTTCGAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTAAGGAGAATGAAGGAATACATTAAGAAGCTTCTGATGAATCTGATGA</left_flank>
        <right_flank>GTTTTCGAGGATGATTAGTCTGGGGGAAGGAGAGGTACTGTAGTTTTTGA</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTGATGTTCAAAAATTCTGTAATTTCGAAATTCTGAAAAAGGAAGGTTCTGAAATCCAGATTTCCAGAAAACTCGAAAATCTCAAGAATTCCAATATATTTGAAAAAGGTATATTTGGAAACCCAGGAAATTTCAGGTTATCCTCATAATCAGAAGTTCAGAAATTCAGAATCCCAGATTTTCAAGGAGCTAAAATCATATGGAATTCTGAAATCCGGAAATTCAGAAGCCGTTCGAAAAGACTTCCGAAACTTTTAGAAAAACTCAAAAAAGCAAAAATATGGATATTCGCCGTTGTCTTTCTTCTCTTCTGAGCTATACTCGTTAGAAAAGAGCGCAAAAAAAGGCTTTCATTAATTAAGGAATAGCCTATTTCTATTTTCTCTTTTTTATGTAAAAAAAGAAGAAGAAGGAAACAGGGGATGGGTAAGTAGGGGATAGAAAAAGTAAGGAGAATGAAGGAATACATTAAGAAGCTTCTGATGAATCTGATGAGGTTTTCGAGGATGATTAGTCTGGGGGAAGGAGAGGTACTGTAGTTTTTGAGATTCTTAGATTCTTAGATTCTTAGATTTTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTTTTTTTTCTTTTTTTTCTTTTTCGAGGATGAAGAGATTCAAAACTAATCCACCAAAATA</canonical>
            <polymorphic>AATTTTGATGTTCAAAAATTCTGTAATTTCGAAATTCTGAAAAAGGAAGGTTCTGAAATCCAGATTTCCAGAAAACTCGAAAATCTCAAGAATTCCAATATATTTGAAAAAGGTATATTTGGAAACCCAGGAAATTTCAGGTTATCCTCATAATCAGAAGTTCAGAAATTCAGAATCCCAGATTTTCAAGGAGCTAAAATCATATGGAATTCTGAAATCCGGAAATTCAGAAGCCGTTCGAAAAGACTTCCGAAACTTTTAGAAAAACTCAAAAAAGCAAAAATATGGATATTCGCCGTTGTCTTTCTTCTCTTCTGAGCTATACTCGTTAGAAAAGAGCGCAAAAAAAGGCTTTCATTAATTAAGGAATAGCCTATTTCTATTTTCTCTTTTTTATGTAAAAAAAGAAGAAGAAGGAAACAGGGGATGGGTAAGTAGGGGATAGAAAAAGTAAGGAGAATGAAGGAATACATTAAGAAGCTTCTGATGAATCTGATGARGTTTTCGAGGATGATTAGTCTGGGGGAAGGAGAGGTACTGTAGTTTTTGAGATTCTTAGATTCTTAGATTCTTAGATTTTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTTTTTTTTCTTTTTTTTCTTTTTCGAGGATGAAGAGATTCAAAACTAATCCACCAAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCTATACTCGTTAGAAAAGAGC</pcr_primer_p1>
		<pcr_primer_p2>GAATCTAAGAATCTCAAAAACTACAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAGCTATACTCGTTAGAAAAGAGCGCAAAAAAAGGCTTTCATTAATTAAGGAATAGCCTATTTCTATTTTCTCTTTTTTATGTAAAAAAAGAAGAAGAAGGAAACAGGGGATGGGTAAGTAGGGGATAGAAAAAGTAAGGAGAATGAAGGAATACATTAAGAAGCTTCTGATGAATCTGATGAGGTTTTCGAGGATGATTAGTCTGGGGGAAGGAGAGGTACTGTAGTTTTTGAGATTCTTAGATTC</canonical_amplicon>
		<polymorphic_amplicon>GAGCTATACTCGTTAGAAAAGAGCGCAAAAAAAGGCTTTCATTAATTAAGGAATAGCCTATTTCTATTTTCTCTTTTTTATGTAAAAAAAGAAGAAGAAGGAAACAGGGGATGGGTAAGTAGGGGATAGAAAAAGTAAGGAGAATGAAGGAATACATTAAGAAGCTTCTGATGAATCTGATGARGTTTTCGAGGATGATTAGTCTGGGGGAAGGAGAGGTACTGTAGTTTTTGAGATTCTTAGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23413</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>183006</contig_pos>
        <strand>+</strand>
        <context>ATCTGATGAR[A/G]TTTTCGAGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAAGGAGAATGAAGGAATACATTAAGAAGCTTCTGATGAATCTGATGAG</left_flank>
        <right_flank>TTTTCGAGGATGATTAGTCTGGGGGAAGGAGAGGTACTGTAGTTTTTGAG</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTGATGTTCAAAAATTCTGTAATTTCGAAATTCTGAAAAAGGAAGGTTCTGAAATCCAGATTTCCAGAAAACTCGAAAATCTCAAGAATTCCAATATATTTGAAAAAGGTATATTTGGAAACCCAGGAAATTTCAGGTTATCCTCATAATCAGAAGTTCAGAAATTCAGAATCCCAGATTTTCAAGGAGCTAAAATCATATGGAATTCTGAAATCCGGAAATTCAGAAGCCGTTCGAAAAGACTTCCGAAACTTTTAGAAAAACTCAAAAAAGCAAAAATATGGATATTCGCCGTTGTCTTTCTTCTCTTCTGAGCTATACTCGTTAGAAAAGAGCGCAAAAAAAGGCTTTCATTAATTAAGGAATAGCCTATTTCTATTTTCTCTTTTTTATGTAAAAAAAGAAGAAGAAGGAAACAGGGGATGGGTAAGTAGGGGATAGAAAAAGTAAGGAGAATGAAGGAATACATTAAGAAGCTTCTGATGAATCTGATGAGGTTTTCGAGGATGATTAGTCTGGGGGAAGGAGAGGTACTGTAGTTTTTGAGATTCTTAGATTCTTAGATTCTTAGATTTTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTTTTTTTTCTTTTTTTTCTTTTTCGAGGATGAAGAGATTCAAAACTAATCCACCAAAATAA</canonical>
            <polymorphic>ATTTTGATGTTCAAAAATTCTGTAATTTCGAAATTCTGAAAAAGGAAGGTTCTGAAATCCAGATTTCCAGAAAACTCGAAAATCTCAAGAATTCCAATATATTTGAAAAAGGTATATTTGGAAACCCAGGAAATTTCAGGTTATCCTCATAATCAGAAGTTCAGAAATTCAGAATCCCAGATTTTCAAGGAGCTAAAATCATATGGAATTCTGAAATCCGGAAATTCAGAAGCCGTTCGAAAAGACTTCCGAAACTTTTAGAAAAACTCAAAAAAGCAAAAATATGGATATTCGCCGTTGTCTTTCTTCTCTTCTGAGCTATACTCGTTAGAAAAGAGCGCAAAAAAAGGCTTTCATTAATTAAGGAATAGCCTATTTCTATTTTCTCTTTTTTATGTAAAAAAAGAAGAAGAAGGAAACAGGGGATGGGTAAGTAGGGGATAGAAAAAGTAAGGAGAATGAAGGAATACATTAAGAAGCTTCTGATGAATCTGATGAGRTTTTCGAGGATGATTAGTCTGGGGGAAGGAGAGGTACTGTAGTTTTTGAGATTCTTAGATTCTTAGATTCTTAGATTTTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTTTTTTTTCTTTTTTTTCTTTTTCGAGGATGAAGAGATTCAAAACTAATCCACCAAAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCTATACTCGTTAGAAAAGAGC</pcr_primer_p1>
		<pcr_primer_p2>GAATCTAAGAATCTCAAAAACTACAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAGCTATACTCGTTAGAAAAGAGCGCAAAAAAAGGCTTTCATTAATTAAGGAATAGCCTATTTCTATTTTCTCTTTTTTATGTAAAAAAAGAAGAAGAAGGAAACAGGGGATGGGTAAGTAGGGGATAGAAAAAGTAAGGAGAATGAAGGAATACATTAAGAAGCTTCTGATGAATCTGATGAGGTTTTCGAGGATGATTAGTCTGGGGGAAGGAGAGGTACTGTAGTTTTTGAGATTCTTAGATTC</canonical_amplicon>
		<polymorphic_amplicon>GAGCTATACTCGTTAGAAAAGAGCGCAAAAAAAGGCTTTCATTAATTAAGGAATAGCCTATTTCTATTTTCTCTTTTTTATGTAAAAAAAGAAGAAGAAGGAAACAGGGGATGGGTAAGTAGGGGATAGAAAAAGTAAGGAGAATGAAGGAATACATTAAGAAGCTTCTGATGAATCTGATGAGRTTTTCGAGGATGATTAGTCTGGGGGAAGGAGAGGTACTGTAGTTTTTGAGATTCTTAGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23414</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>183026</contig_pos>
        <strand>+</strand>
        <context>ATGATTAGTC[C/T]GGGGGAYGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATTAAGAAGCTTCTGATGAATCTGATGAGGTTTTCGAGGATGATTAGTC</left_flank>
        <right_flank>GGGGGAAGGAGAGGTACTGTAGTTTTTGAGATTCTTAGATTCTTAGATTC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTAATTTCGAAATTCTGAAAAAGGAAGGTTCTGAAATCCAGATTTCCAGAAAACTCGAAAATCTCAAGAATTCCAATATATTTGAAAAAGGTATATTTGGAAACCCAGGAAATTTCAGGTTATCCTCATAATCAGAAGTTCAGAAATTCAGAATCCCAGATTTTCAAGGAGCTAAAATCATATGGAATTCTGAAATCCGGAAATTCAGAAGCCGTTCGAAAAGACTTCCGAAACTTTTAGAAAAACTCAAAAAAGCAAAAATATGGATATTCGCCGTTGTCTTTCTTCTCTTCTGAGCTATACTCGTTAGAAAAGAGCGCAAAAAAAGGCTTTCATTAATTAAGGAATAGCCTATTTCTATTTTCTCTTTTTTATGTAAAAAAAGAAGAAGAAGGAAACAGGGGATGGGTAAGTAGGGGATAGAAAAAGTAAGGAGAATGAAGGAATACATTAAGAAGCTTCTGATGAATCTGATGAGGTTTTCGAGGATGATTAGTCTGGGGGAAGGAGAGGTACTGTAGTTTTTGAGATTCTTAGATTCTTAGATTCTTAGATTTTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTTTTTTTTCTTTTTTTTCTTTTTCGAGGATGAAGAGATTCAAAACTAATCCACCAAAATAAACAAGTGTGGTTACCTTTTC</canonical>
            <polymorphic>TGTAATTTCGAAATTCTGAAAAAGGAAGGTTCTGAAATCCAGATTTCCAGAAAACTCGAAAATCTCAAGAATTCCAATATATTTGAAAAAGGTATATTTGGAAACCCAGGAAATTTCAGGTTATCCTCATAATCAGAAGTTCAGAAATTCAGAATCCCAGATTTTCAAGGAGCTAAAATCATATGGAATTCTGAAATCCGGAAATTCAGAAGCCGTTCGAAAAGACTTCCGAAACTTTTAGAAAAACTCAAAAAAGCAAAAATATGGATATTCGCCGTTGTCTTTCTTCTCTTCTGAGCTATACTCGTTAGAAAAGAGCGCAAAAAAAGGCTTTCATTAATTAAGGAATAGCCTATTTCTATTTTCTCTTTTTTATGTAAAAAAAGAAGAAGAAGGAAACAGGGGATGGGTAAGTAGGGGATAGAAAAAGTAAGGAGAATGAAGGAATACATTAAGAAGCTTCTGATGAATCTGATGAGGTTTTCGAGGATGATTAGTCYGGGGGAAGGAGAGGTACTGTAGTTTTTGAGATTCTTAGATTCTTAGATTCTTAGATTTTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTTTTTTTTCTTTTTTTTCTTTTTCGAGGATGAAGAGATTCAAAACTAATCCACCAAAATAAACAAGTGTGGTTACCTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAGAATGAAGGAATACATTAAG</pcr_primer_p1>
		<pcr_primer_p2>GGTGGATTAGTTTTGAATCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>541</pcr_amplicon_size>
		<canonical_amplicon>AGGAGAATGAAGGAATACATTAAGAAGCTTCTGATGAATCTGATGAGGTTTTCGAGGATGATTAGTCTGGGGGAAGGAGAGGTACTGTAGTTTTTGAGATTCTTAGATTCTTAGATTCTTAGATTTTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTTTTTTTTCTTTTTTTTCTTTTTCGAGGATGAAGAGATTCAAAACTAATCCACC</canonical_amplicon>
		<polymorphic_amplicon>AGGAGAATGAAGGAATACATTAAGAAGCTTCTGATGAATCTGATGAGGTTTTCGAGGATGATTAGTCYGGGGGAAGGAGAGGTACTGTAGTTTTTGAGATTCTTAGATTCTTAGATTCTTAGATTTTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTTTTTTTTCTTTTTTTTCTTTTTCGAGGATGAAGAGATTCAAAACTAATCCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23415</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>183033</contig_pos>
        <strand>+</strand>
        <context>GTCYGGGGGA[C/T]GGAGAGGKAC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGCTTCTGATGAATCTGATGAGGTTTTCGAGGATGATTAGTCTGGGGGA</left_flank>
        <right_flank>GGAGAGGTACTGTAGTTTTTGAGATTCTTAGATTCTTAGATTCTTAGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGAAATTCTGAAAAAGGAAGGTTCTGAAATCCAGATTTCCAGAAAACTCGAAAATCTCAAGAATTCCAATATATTTGAAAAAGGTATATTTGGAAACCCAGGAAATTTCAGGTTATCCTCATAATCAGAAGTTCAGAAATTCAGAATCCCAGATTTTCAAGGAGCTAAAATCATATGGAATTCTGAAATCCGGAAATTCAGAAGCCGTTCGAAAAGACTTCCGAAACTTTTAGAAAAACTCAAAAAAGCAAAAATATGGATATTCGCCGTTGTCTTTCTTCTCTTCTGAGCTATACTCGTTAGAAAAGAGCGCAAAAAAAGGCTTTCATTAATTAAGGAATAGCCTATTTCTATTTTCTCTTTTTTATGTAAAAAAAGAAGAAGAAGGAAACAGGGGATGGGTAAGTAGGGGATAGAAAAAGTAAGGAGAATGAAGGAATACATTAAGAAGCTTCTGATGAATCTGATGAGGTTTTCGAGGATGATTAGTCTGGGGGAAGGAGAGGTACTGTAGTTTTTGAGATTCTTAGATTCTTAGATTCTTAGATTTTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTTTTTTTTCTTTTTTTTCTTTTTCGAGGATGAAGAGATTCAAAACTAATCCACCAAAATAAACAAGTGTGGTTACCTTTTCTACCAAT</canonical>
            <polymorphic>TCGAAATTCTGAAAAAGGAAGGTTCTGAAATCCAGATTTCCAGAAAACTCGAAAATCTCAAGAATTCCAATATATTTGAAAAAGGTATATTTGGAAACCCAGGAAATTTCAGGTTATCCTCATAATCAGAAGTTCAGAAATTCAGAATCCCAGATTTTCAAGGAGCTAAAATCATATGGAATTCTGAAATCCGGAAATTCAGAAGCCGTTCGAAAAGACTTCCGAAACTTTTAGAAAAACTCAAAAAAGCAAAAATATGGATATTCGCCGTTGTCTTTCTTCTCTTCTGAGCTATACTCGTTAGAAAAGAGCGCAAAAAAAGGCTTTCATTAATTAAGGAATAGCCTATTTCTATTTTCTCTTTTTTATGTAAAAAAAGAAGAAGAAGGAAACAGGGGATGGGTAAGTAGGGGATAGAAAAAGTAAGGAGAATGAAGGAATACATTAAGAAGCTTCTGATGAATCTGATGAGGTTTTCGAGGATGATTAGTCTGGGGGAYGGAGAGGTACTGTAGTTTTTGAGATTCTTAGATTCTTAGATTCTTAGATTTTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTTTTTTTTCTTTTTTTTCTTTTTCGAGGATGAAGAGATTCAAAACTAATCCACCAAAATAAACAAGTGTGGTTACCTTTTCTACCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAGAATGAAGGAATACATTAAG</pcr_primer_p1>
		<pcr_primer_p2>GGTGGATTAGTTTTGAATCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>541</pcr_amplicon_size>
		<canonical_amplicon>AGGAGAATGAAGGAATACATTAAGAAGCTTCTGATGAATCTGATGAGGTTTTCGAGGATGATTAGTCTGGGGGAAGGAGAGGTACTGTAGTTTTTGAGATTCTTAGATTCTTAGATTCTTAGATTTTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTTTTTTTTCTTTTTTTTCTTTTTCGAGGATGAAGAGATTCAAAACTAATCCACC</canonical_amplicon>
		<polymorphic_amplicon>AGGAGAATGAAGGAATACATTAAGAAGCTTCTGATGAATCTGATGAGGTTTTCGAGGATGATTAGTCTGGGGGAYGGAGAGGTACTGTAGTTTTTGAGATTCTTAGATTCTTAGATTCTTAGATTTTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTTTTTTTTCTTTTTTTTCTTTTTCGAGGATGAAGAGATTCAAAACTAATCCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23416</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>183041</contig_pos>
        <strand>+</strand>
        <context>GAYGGAGAGG[G/T]ACTGTAGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATGAATCTGATGAGGTTTTCGAGGATGATTAGTCTGGGGGAAGGAGAGG</left_flank>
        <right_flank>ACTGTAGTTTTTGAGATTCTTAGATTCTTAGATTCTTAGATTTTTAGATT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAAAAAGGAAGGTTCTGAAATCCAGATTTCCAGAAAACTCGAAAATCTCAAGAATTCCAATATATTTGAAAAAGGTATATTTGGAAACCCAGGAAATTTCAGGTTATCCTCATAATCAGAAGTTCAGAAATTCAGAATCCCAGATTTTCAAGGAGCTAAAATCATATGGAATTCTGAAATCCGGAAATTCAGAAGCCGTTCGAAAAGACTTCCGAAACTTTTAGAAAAACTCAAAAAAGCAAAAATATGGATATTCGCCGTTGTCTTTCTTCTCTTCTGAGCTATACTCGTTAGAAAAGAGCGCAAAAAAAGGCTTTCATTAATTAAGGAATAGCCTATTTCTATTTTCTCTTTTTTATGTAAAAAAAGAAGAAGAAGGAAACAGGGGATGGGTAAGTAGGGGATAGAAAAAGTAAGGAGAATGAAGGAATACATTAAGAAGCTTCTGATGAATCTGATGAGGTTTTCGAGGATGATTAGTCTGGGGGAAGGAGAGGTACTGTAGTTTTTGAGATTCTTAGATTCTTAGATTCTTAGATTTTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTTTTTTTTCTTTTTTTTCTTTTTCGAGGATGAAGAGATTCAAAACTAATCCACCAAAATAAACAAGTGTGGTTACCTTTTCTACCAATCTGCAAGA</canonical>
            <polymorphic>CTGAAAAAGGAAGGTTCTGAAATCCAGATTTCCAGAAAACTCGAAAATCTCAAGAATTCCAATATATTTGAAAAAGGTATATTTGGAAACCCAGGAAATTTCAGGTTATCCTCATAATCAGAAGTTCAGAAATTCAGAATCCCAGATTTTCAAGGAGCTAAAATCATATGGAATTCTGAAATCCGGAAATTCAGAAGCCGTTCGAAAAGACTTCCGAAACTTTTAGAAAAACTCAAAAAAGCAAAAATATGGATATTCGCCGTTGTCTTTCTTCTCTTCTGAGCTATACTCGTTAGAAAAGAGCGCAAAAAAAGGCTTTCATTAATTAAGGAATAGCCTATTTCTATTTTCTCTTTTTTATGTAAAAAAAGAAGAAGAAGGAAACAGGGGATGGGTAAGTAGGGGATAGAAAAAGTAAGGAGAATGAAGGAATACATTAAGAAGCTTCTGATGAATCTGATGAGGTTTTCGAGGATGATTAGTCTGGGGGAAGGAGAGGKACTGTAGTTTTTGAGATTCTTAGATTCTTAGATTCTTAGATTTTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTTTTTTTTCTTTTTTTTCTTTTTCGAGGATGAAGAGATTCAAAACTAATCCACCAAAATAAACAAGTGTGGTTACCTTTTCTACCAATCTGCAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGAGAATGAAGGAATACATTAAG</pcr_primer_p1>
		<pcr_primer_p2>GGTGGATTAGTTTTGAATCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>541</pcr_amplicon_size>
		<canonical_amplicon>AGGAGAATGAAGGAATACATTAAGAAGCTTCTGATGAATCTGATGAGGTTTTCGAGGATGATTAGTCTGGGGGAAGGAGAGGTACTGTAGTTTTTGAGATTCTTAGATTCTTAGATTCTTAGATTTTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTTTTTTTTCTTTTTTTTCTTTTTCGAGGATGAAGAGATTCAAAACTAATCCACC</canonical_amplicon>
		<polymorphic_amplicon>AGGAGAATGAAGGAATACATTAAGAAGCTTCTGATGAATCTGATGAGGTTTTCGAGGATGATTAGTCTGGGGGAAGGAGAGGKACTGTAGTTTTTGAGATTCTTAGATTCTTAGATTCTTAGATTTTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTTTTTTTTCTTTTTTTTCTTTTTCGAGGATGAAGAGATTCAAAACTAATCCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23417</snp_id>
        <super_contig>c000000916.Contig1</super_contig>
        <contig_pos>183148</contig_pos>
        <strand></strand>
        <context>TTCTTAGATT[C/T]TTAGATTCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATT</left_flank>
        <right_flank>TTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCTCATAATCAGAAGTTCAGAAATTCAGAATCCCAGATTTTCAAGGAGCTAAAATCATATGGAATTCTGAAATCCGGAAATTCAGAAGCCGTTCGAAAAGACTTCCGAAACTTTTAGAAAAACTCAAAAAAGCAAAAATATGGATATTCGCCGTTGTCTTTCTTCTCTTCTGAGCTATACTCGTTAGAAAAGAGCGCAAAAAAAGGCTTTCATTAATTAAGGAATAGCCTATTTCTATTTTCTCTTTTTTATGTAAAAAAAGAAGAAGAAGGAAACAGGGGATGGGTAAGTAGGGGATAGAAAAAGTAAGGAGAATGAAGGAATACATTAAGAAGCTTCTGATGAATCTGATGAGGTTTTCGAGGATGATTAGTCTGGGGGAAGGAGAGGTACTGTAGTTTTTGAGATTCTTAGATTCTTAGATTCTTAGATTTTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTTTTTTTTCTTTTTTTTCTTTTTCGAGGATGAAGAGATTCAAAACTAATCCACCAAAATAAACAAGTGTGGTTACCTTTTCTACCAATCTGCAAGAGTAATTACCTCTTCTCTCTCTCTCTCTCTCTCTCCAGCTCCGCACAGTTGAGCACATAATTTGTTTTTGAATGAATTCGGAAAGAAATCCTACCTACACTCCGCCCG</canonical>
            <polymorphic>ATCCTCATAATCAGAAGTTCAGAAATTCAGAATCCCAGATTTTCAAGGAGCTAAAATCATATGGAATTCTGAAATCCGGAAATTCAGAAGCCGTTCGAAAAGACTTCCGAAACTTTTAGAAAAACTCAAAAAAGCAAAAATATGGATATTCGCCGTTGTCTTTCTTCTCTTCTGAGCTATACTCGTTAGAAAAGAGCGCAAAAAAAGGCTTTCATTAATTAAGGAATAGCCTATTTCTATTTTCTCTTTTTTATGTAAAAAAAGAAGAAGAAGGAAACAGGGGATGGGTAAGTAGGGGATAGAAAAAGTAAGGAGAATGAAGGAATACATTAAGAAGCTTCTGATGAATCTGATGAGGTTTTCGAGGATGATTAGTCTGGGGGAAGGAGAGGTACTGTAGTTTTTGAGATTCTTAGATTYTTAGATTCTTAGATTTTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTTTTTTTTCTTTTTTTTCTTTTTCGAGGATGAAGAGATTCAAAACTAATCCACCAAAATAAACAAGTGTGGTTACCTTTTCTACCAATCTGCAAGAGTAATTACCTCTTCTCTCTCTCTCTCTCTCTCTCCAGCTCCGCACAGTTGAGCACATAATTTGTTTTTGAATGAATTCGGAAAGAAATCCTACCTACACTCCGCCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>240 212 172 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>240 212 172 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>316 167 62 41 30 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>316 167 62 41 30 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>316 167 62 41 30 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>316 167 62 41 30 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGAGAATGAAGGAATACATTAAG</pcr_primer_p1>
		<pcr_primer_p2>GGTGGATTAGTTTTGAATCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>541</pcr_amplicon_size>
		<canonical_amplicon>AGGAGAATGAAGGAATACATTAAGAAGCTTCTGATGAATCTGATGAGGTTTTCGAGGATGATTAGTCTGGGGGAAGGAGAGGTACTGTAGTTTTTGAGATTCTTAGATTYTTAGATTCTTAGATTTTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTTTTTTTTCTTTTTTTTCTTTTTCGAGGATGAAGAGATTCAAAACTAATCCACC</canonical_amplicon>
		<polymorphic_amplicon>AGGAGAATGAAGGAATACATTAAGAAGCTTCTGATGAATCTGATGAGGTTTTCGAGGATGATTAGTCTGGGGGAAGGAGAGGTACTGTAGTTTTTGAGATTCTTAGATTYTTAGATTCTTAGATTTTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTTTTTTTTCTTTTTTTTCTTTTTCGAGGATGAAGAGATTCAAAACTAATCCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23429</snp_id>
        <super_contig>c000000925.Contig1</super_contig>
        <contig_pos>47810</contig_pos>
        <strand>+</strand>
        <context>AGTGTGATCC[A/T]ATGGACCTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCACCTTATTCTGAATGACCATCCACCAAAAGTCCTCGCAAGTGTGATCC</left_flank>
        <right_flank>ATGGACCTTGACAACAGATGAATCGTTTCTCGGGATACATTGGACATCCG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATAGATCACTGTCCAACTGCTGTGTTGTAGTCCTTGACAAACTTCTCGTACTTTGCAACGTTCTCGTCAGAAGAGACGCATACTTCTCCTTGTACTTATCCAAAAAGTAGTTGAGCATCACGCGATGAATGTACAAGTACTGAAGATCGTTTTGAATCGAGTAGGCACGCTGATCGCGGAGTTGTTTGACAAGATCCGGCATCGGAGGGCACTGTTTATTCTCGGCGATTTTTTCTGCAAAATGAAAAGTTATTTAGGCTGAAATCGAGGTAAAAAATTAACCAAGAATATACTCGATTGCCACAATAGTTCCAGTTTTTGTTCCCGACATGTTCTCCACAACAACACCCGATTTGAATTCTTTCTTCTCTCCCTGAGCACCCGGCCAATACTGAGCACATTTCAGTTTTCCAGTCTCCACTGTCTTGCAAAGCATCACGATCTGCTCCACCTTATTCTGAATGACCATCCACCAAAAGTCCTCGCAAGTGTGATCCTATGGACCTTGACAACAGATGAATCGTTTCTCGGGATACATTGGACATCCGACGTAGTTGGCATGGATGTAAGTACTTGGAGATGGGGGCTCCAATTTGACAATGCATTGATCTTGGCATGGAACATCTTGGTAGCTGAAATCCGAGTGCTTGAAACTAAATCTTTAAATCTTAAAAAGAGAAACGAACCGATTTTTGGTGATGTTGATATCGGTAGAATGGTTAGAATTGAAGACGTTTTGGGTCATATCACTGCGAACGTATTTTGCGAGACCCCGAAATTCCTCTCGAAGCTTCTCCACTCCAAAATCCAACGCACGAAGTACCCACTCCTGAACGATCGGATGAGCTTGCGGAGGTGCTGGAGTCATATTGGTCTTGTTCGTCGGATCTGCCTCTTCCACCTTCTTCTTCTCCTTCTTGATTCTTCTGGATCCGTCAGCTCCTTTTTTCTTGGCTGGTGGTGGCGCTTCCGTTGTAGCCGTCCCTTTCTTTCCCTTC</canonical>
            <polymorphic>AAATAGATCACTGTCCAACTGCTGTGTTGTAGTCCTTGACAAACTTCTCGTACTTTGCAACGTTCTCGTCAGAAGAGACGCATACTTCTCCTTGTACTTATCCAAAAAGTAGTTGAGCATCACGCGATGAATGTACAAGTACTGAAGATCGTTTTGAATCGAGTAGGCACGCTGATCGCGGAGTTGTTTGACAAGATCCGGCATCGGAGGGCACTGTTTATTCTCGGCGATTTTTTCTGCAAAATGAAAAGTTATTTAGGCTGAAATCGAGGTAAAAAATTAACCAAGAATATACTCGATTGCCACAATAGTTCCAGTTTTTGTTCCCGACATGTTCTCCACAACAACACCCGATTTGAATTCTTTCTTCTCTCCCTGAGCACCCGGCCAATACTGAGCACATTTCAGTTTTCCAGTCTCCACTGTCTTGCAAAGCATCACGATCTGCTCCACCTTATTCTGAATGACCATCCACCAAAAGTCCTCGCAAGTGTGATCCWATGGACCTTGACAACAGATGAATCGTTTCTCGGGATACATTGGACATCCGACGTAGTTGGCATGGATGTAAGTACTTGGAGATGGGGGCTCCAATTTGACAATGCATTGATCTTGGCATGGAACATCTTGGTAGCTGAAATCCGAGTGCTTGAAACTAAATCTTTAAATCTTAAAAAGAGAAACGAACCGATTTTTGGTGATGTTGATATCGGTAGAATGGTTAGAATTGAAGACGTTTTGGGTCATATCACTGCGAACGTATTTTGCGAGACCCCGAAATTCCTCTCGAAGCTTCTCCACTCCAAAATCCAACGCACGAAGTACCCACTCCTGAACGATCGGATGAGCTTGCGGAGGTGCTGGAGTCATATTGGTCTTGTTCGTCGGATCTGCCTCTTCCACCTTCTTCTTCTCCTTCTTGATTCTTCTGGATCCGTCAGCTCCTTTTTTCTTGGCTGGTGGTGGCGCTTCCGTTGTAGCCGTCCCTTTCTTTCCCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACTGAGCACATTTCAGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>GATTTCAGCTACCAAGATGTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATACTGAGCACATTTCAGTTTTCCAGTCTCCACTGTCTTGCAAAGCATCACGATCTGCTCCACCTTATTCTGAATGACCATCCACCAAAAGTCCTCGCAAGTGTGATCCTATGGACCTTGACAACAGATGAATCGTTTCTCGGGATACATTGGACATCCGACGTAGTTGGCATGGATGTAAGTACTTGGAGATGGGGGCTCCAATTTGACAATGCATTGATCTTGGCATGGAACATCTTGGTAGCTGAAATC</canonical_amplicon>
		<polymorphic_amplicon>ATACTGAGCACATTTCAGTTTTCCAGTCTCCACTGTCTTGCAAAGCATCACGATCTGCTCCACCTTATTCTGAATGACCATCCACCAAAAGTCCTCGCAAGTGTGATCCWATGGACCTTGACAACAGATGAATCGTTTCTCGGGATACATTGGACATCCGACGTAGTTGGCATGGATGTAAGTACTTGGAGATGGGGGCTCCAATTTGACAATGCATTGATCTTGGCATGGAACATCTTGGTAGCTGAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23430</snp_id>
        <super_contig>c000000925.Contig1</super_contig>
        <contig_pos>47983</contig_pos>
        <strand>+</strand>
        <context>TTTAAATCTT[A/T]AAAAGAGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACATCTTGGTAGCTGAAATCCGAGTGCTTGAAACTAAATCTTTAAATCTT</left_flank>
        <right_flank>AAAAGAGAAACGAACCGATTTTTGGTGATGTTGATATCGGTAGAATGGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATCGCGGAGTTGTTTGACAAGATCCGGCATCGGAGGGCACTGTTTATTCTCGGCGATTTTTTCTGCAAAATGAAAAGTTATTTAGGCTGAAATCGAGGTAAAAAATTAACCAAGAATATACTCGATTGCCACAATAGTTCCAGTTTTTGTTCCCGACATGTTCTCCACAACAACACCCGATTTGAATTCTTTCTTCTCTCCCTGAGCACCCGGCCAATACTGAGCACATTTCAGTTTTCCAGTCTCCACTGTCTTGCAAAGCATCACGATCTGCTCCACCTTATTCTGAATGACCATCCACCAAAAGTCCTCGCAAGTGTGATCCTATGGACCTTGACAACAGATGAATCGTTTCTCGGGATACATTGGACATCCGACGTAGTTGGCATGGATGTAAGTACTTGGAGATGGGGGCTCCAATTTGACAATGCATTGATCTTGGCATGGAACATCTTGGTAGCTGAAATCCGAGTGCTTGAAACTAAATCTTTAAATCTTAAAAAGAGAAACGAACCGATTTTTGGTGATGTTGATATCGGTAGAATGGTTAGAATTGAAGACGTTTTGGGTCATATCACTGCGAACGTATTTTGCGAGACCCCGAAATTCCTCTCGAAGCTTCTCCACTCCAAAATCCAACGCACGAAGTACCCACTCCTGAACGATCGGATGAGCTTGCGGAGGTGCTGGAGTCATATTGGTCTTGTTCGTCGGATCTGCCTCTTCCACCTTCTTCTTCTCCTTCTTGATTCTTCTGGATCCGTCAGCTCCTTTTTTCTTGGCTGGTGGTGGCGCTTCCGTTGTAGCCGTCCCTTTCTTTCCCTTCTTTATTCCAAGAACCATTCCAGCTTGAGCTCTCGGCGCCTCTTCTTCTACACTTTGCATTGCTTCGGTTGAAATTCTCGAAGCTTCTTTTGACTTCTTAGTTTCGAAATCGATTATGGAATCGTGGATACAAGCCAAGCTCTCGATATTTATGGGGATTTCTTATCTTGCCAA</canonical>
            <polymorphic>GATCGCGGAGTTGTTTGACAAGATCCGGCATCGGAGGGCACTGTTTATTCTCGGCGATTTTTTCTGCAAAATGAAAAGTTATTTAGGCTGAAATCGAGGTAAAAAATTAACCAAGAATATACTCGATTGCCACAATAGTTCCAGTTTTTGTTCCCGACATGTTCTCCACAACAACACCCGATTTGAATTCTTTCTTCTCTCCCTGAGCACCCGGCCAATACTGAGCACATTTCAGTTTTCCAGTCTCCACTGTCTTGCAAAGCATCACGATCTGCTCCACCTTATTCTGAATGACCATCCACCAAAAGTCCTCGCAAGTGTGATCCTATGGACCTTGACAACAGATGAATCGTTTCTCGGGATACATTGGACATCCGACGTAGTTGGCATGGATGTAAGTACTTGGAGATGGGGGCTCCAATTTGACAATGCATTGATCTTGGCATGGAACATCTTGGTAGCTGAAATCCGAGTGCTTGAAACTAAATCTTTAAATCTTWAAAAGAGAAACGAACCGATTTTTGGTGATGTTGATATCGGTAGAATGGTTAGAATTGAAGACGTTTTGGGTCATATCACTGCGAACGTATTTTGCGAGACCCCGAAATTCCTCTCGAAGCTTCTCCACTCCAAAATCCAACGCACGAAGTACCCACTCCTGAACGATCGGATGAGCTTGCGGAGGTGCTGGAGTCATATTGGTCTTGTTCGTCGGATCTGCCTCTTCCACCTTCTTCTTCTCCTTCTTGATTCTTCTGGATCCGTCAGCTCCTTTTTTCTTGGCTGGTGGTGGCGCTTCCGTTGTAGCCGTCCCTTTCTTTCCCTTCTTTATTCCAAGAACCATTCCAGCTTGAGCTCTCGGCGCCTCTTCTTCTACACTTTGCATTGCTTCGGTTGAAATTCTCGAAGCTTCTTTTGACTTCTTAGTTTCGAAATCGATTATGGAATCGTGGATACAAGCCAAGCTCTCGATATTTATGGGGATTTCTTATCTTGCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 384 107 7</canonical_bands>
                <polymorphic_bands>509 384 107</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGGATGTAAGTACTTGGAGAT</pcr_primer_p1>
		<pcr_primer_p2>AGAAGCTTCGAGAGGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CATGGATGTAAGTACTTGGAGATGGGGGCTCCAATTTGACAATGCATTGATCTTGGCATGGAACATCTTGGTAGCTGAAATCCGAGTGCTTGAAACTAAATCTTTAAATCTTAAAAAGAGAAACGAACCGATTTTTGGTGATGTTGATATCGGTAGAATGGTTAGAATTGAAGACGTTTTGGGTCATATCACTGCGAACGTATTTTGCGAGACCCCGAAATTCCTCTCGAAGCTTCT</canonical_amplicon>
		<polymorphic_amplicon>CATGGATGTAAGTACTTGGAGATGGGGGCTCCAATTTGACAATGCATTGATCTTGGCATGGAACATCTTGGTAGCTGAAATCCGAGTGCTTGAAACTAAATCTTTAAATCTTWAAAAGAGAAACGAACCGATTTTTGGTGATGTTGATATCGGTAGAATGGTTAGAATTGAAGACGTTTTGGGTCATATCACTGCGAACGTATTTTGCGAGACCCCGAAATTCCTCTCGAAGCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23431</snp_id>
        <super_contig>c000000925.Contig1</super_contig>
        <contig_pos>48288</contig_pos>
        <strand>+</strand>
        <context>GCTTCCGTTG[C/T]AGCCGTCCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTGGATCCGTCAGCTCCTTTTTTCTTGGCTGGTGGTGGCGCTTCCGTTG</left_flank>
        <right_flank>AGCCGTCCCTTTCTTTCCCTTCTTTATTCCAAGAACCATTCCAGCTTGAG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTCCTCGCAAGTGTGATCCTATGGACCTTGACAACAGATGAATCGTTTCTCGGGATACATTGGACATCCGACGTAGTTGGCATGGATGTAAGTACTTGGAGATGGGGGCTCCAATTTGACAATGCATTGATCTTGGCATGGAACATCTTGGTAGCTGAAATCCGAGTGCTTGAAACTAAATCTTTAAATCTTAAAAAGAGAAACGAACCGATTTTTGGTGATGTTGATATCGGTAGAATGGTTAGAATTGAAGACGTTTTGGGTCATATCACTGCGAACGTATTTTGCGAGACCCCGAAATTCCTCTCGAAGCTTCTCCACTCCAAAATCCAACGCACGAAGTACCCACTCCTGAACGATCGGATGAGCTTGCGGAGGTGCTGGAGTCATATTGGTCTTGTTCGTCGGATCTGCCTCTTCCACCTTCTTCTTCTCCTTCTTGATTCTTCTGGATCCGTCAGCTCCTTTTTTCTTGGCTGGTGGTGGCGCTTCCGTTGTAGCCGTCCCTTTCTTTCCCTTCTTTATTCCAAGAACCATTCCAGCTTGAGCTCTCGGCGCCTCTTCTTCTACACTTTGCATTGCTTCGGTTGAAATTCTCGAAGCTTCTTTTGACTTCTTAGTTTCGAAATCGATTATGGAATCGTGGATACAAGCCAAGCTCTCGATATTTATGGGGATTTCTTATCTTGCCAAGTGATCAAATGGGGTTAACTGGCAAAAACCCTCAAAAAAAGGCAGAAAACTGGCTCACTCGGAATATCAGCTTTTAAAATTCGACTGTACACTGTTCAGTCAGAATGCATGCACTTCTTTTTAATTAGGACACGAGCGGGGAGCTTAAAATTTTGGAAAACAGATTTTTATCAACTTTTCTCAGATGTCTGATGAATTTGTCATCTAATTCAGATATTGTTATCATTTGCAATATTATATATTTTGTCATCATGTTCCAGACACATTATTTTGCTCCTTGGGTAATAAAGCAATAATTATTAGGG</canonical>
            <polymorphic>AAGTCCTCGCAAGTGTGATCCTATGGACCTTGACAACAGATGAATCGTTTCTCGGGATACATTGGACATCCGACGTAGTTGGCATGGATGTAAGTACTTGGAGATGGGGGCTCCAATTTGACAATGCATTGATCTTGGCATGGAACATCTTGGTAGCTGAAATCCGAGTGCTTGAAACTAAATCTTTAAATCTTAAAAAGAGAAACGAACCGATTTTTGGTGATGTTGATATCGGTAGAATGGTTAGAATTGAAGACGTTTTGGGTCATATCACTGCGAACGTATTTTGCGAGACCCCGAAATTCCTCTCGAAGCTTCTCCACTCCAAAATCCAACGCACGAAGTACCCACTCCTGAACGATCGGATGAGCTTGCGGAGGTGCTGGAGTCATATTGGTCTTGTTCGTCGGATCTGCCTCTTCCACCTTCTTCTTCTCCTTCTTGATTCTTCTGGATCCGTCAGCTCCTTTTTTCTTGGCTGGTGGTGGCGCTTCCGTTGYAGCCGTCCCTTTCTTTCCCTTCTTTATTCCAAGAACCATTCCAGCTTGAGCTCTCGGCGCCTCTTCTTCTACACTTTGCATTGCTTCGGTTGAAATTCTCGAAGCTTCTTTTGACTTCTTAGTTTCGAAATCGATTATGGAATCGTGGATACAAGCCAAGCTCTCGATATTTATGGGGATTTCTTATCTTGCCAAGTGATCAAATGGGGTTAACTGGCAAAAACCCTCAAAAAAAGGCAGAAAACTGGCTCACTCGGAATATCAGCTTTTAAAATTCGACTGTACACTGTTCAGTCAGAATGCATGCACTTCTTTTTAATTAGGACACGAGCGGGGAGCTTAAAATTTTGGAAAACAGATTTTTATCAACTTTTCTCAGATGTCTGATGAATTTGTCATCTAATTCAGATATTGTTATCATTTGCAATATTATATATTTTGTCATCATGTTCCAGACACATTATTTTGCTCCTTGGGTAATAAAGCAATAATTATTAGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGGAGTCATATTGGTCTTGTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCGAAACTAAGAAGTCAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTGGAGTCATATTGGTCTTGTTCGTCGGATCTGCCTCTTCCACCTTCTTCTTCTCCTTCTTGATTCTTCTGGATCCGTCAGCTCCTTTTTTCTTGGCTGGTGGTGGCGCTTCCGTTGTAGCCGTCCCTTTCTTTCCCTTCTTTATTCCAAGAACCATTCCAGCTTGAGCTCTCGGCGCCTCTTCTTCTACACTTTGCATTGCTTCGGTTGAAATTCTCGAAGCTTCTTTTGACTTCTTAGTTTCGAAA</canonical_amplicon>
		<polymorphic_amplicon>CTGGAGTCATATTGGTCTTGTTCGTCGGATCTGCCTCTTCCACCTTCTTCTTCTCCTTCTTGATTCTTCTGGATCCGTCAGCTCCTTTTTTCTTGGCTGGTGGTGGCGCTTCCGTTGYAGCCGTCCCTTTCTTTCCCTTCTTTATTCCAAGAACCATTCCAGCTTGAGCTCTCGGCGCCTCTTCTTCTACACTTTGCATTGCTTCGGTTGAAATTCTCGAAGCTTCTTTTGACTTCTTAGTTTCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23432</snp_id>
        <super_contig>c000000925.Contig1</super_contig>
        <contig_pos>50878</contig_pos>
        <strand>+</strand>
        <context>AAAATGGAAC[A/C]ACAACAAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTTGTATAGTAGTCTATTACTTCTTCTTTTCCAGCTGAAAAAATGGAAC</left_flank>
        <right_flank>ACAACAAATGACTCTACTTTCAATTGAAACTGTTCTCAAGTTTACTCCAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATGCTTTTCAGCTTTGATGTCATAAGAAGTTCCATTGTCGCCCTGGTTTCCACTGTGCTCAATTGGAAACCTTGAGAATCTGAGTGTCTCTTTGGACTGCTTTCTGGGCCCAGAACTCCCAGATTTGGAAACTTTTGACGCAGCATAAAATCTTTGTCCTCCAGATTTCCAATATTCACAATACGATATGAAAGCATTTATAAATTCCAGTTTTTTCTATTCCAAAAATCATTTTCTCTTTTTTGCTTCTCTCCGATTTCTTGTTGACATTGTTTCTCTCATCTCTCTCTCTCTATTCTCACTTGCATATTTTAACACAACACATGTGTATTTTTATTTTCCTTCTTTTTCTCTTCATAGCTTTTCGCTATTTCGTCTCCTAGTCTCCCCCTTTTTCCCTGCCATCCGAAATTTGTTGCCCTTCTTTTTGCAGTTGTTTCTTTCCCACTTTGTATAGTAGTCTATTACTTCTTCTTTTCCAGCTGAAAAAATGGAACAACAACAAATGACTCTACTTTCAATTGAAACTGTTCTCAAGTTTACTCCAATTGAAAAACTTTGGCAGATGAGAATAGAGAATCCAGTTTTAAAAGAAATTTCAGATAAAGTTCCATATGATGAGATGAGGTTTGAAGATTATCAAAGATTACTGTAGAACGTTGATTTTTCAGAAAATGGATAATTGACGCAATCATCATAACAGACGACAGAATAGCTAGCAGAAGAGCAGAAGATTTTTTCGCAGAGCTGAAGTTTGTGAGTATCTTTGTAAGATTGAAACCACTTGAATATTATTTTATTAGATTCAAATCAAGGGAAGTAGACAAACTAGATGGCTTTCACCTAAATTTCTTCAACTGGCTACATCTTCTGAAATTCTGAAAGATTCTGTTCTTCCTGTTGCAAAAACGTTTTGTAAAGAAATCCTATCTGTAGGTTTTAAGTTTTTTTTTTTTTGAATTTTTTTTTGAAAACTCCATTTTCTTTCAGATTGATAT</canonical>
            <polymorphic>GCATGCTTTTCAGCTTTGATGTCATAAGAAGTTCCATTGTCGCCCTGGTTTCCACTGTGCTCAATTGGAAACCTTGAGAATCTGAGTGTCTCTTTGGACTGCTTTCTGGGCCCAGAACTCCCAGATTTGGAAACTTTTGACGCAGCATAAAATCTTTGTCCTCCAGATTTCCAATATTCACAATACGATATGAAAGCATTTATAAATTCCAGTTTTTTCTATTCCAAAAATCATTTTCTCTTTTTTGCTTCTCTCCGATTTCTTGTTGACATTGTTTCTCTCATCTCTCTCTCTCTATTCTCACTTGCATATTTTAACACAACACATGTGTATTTTTATTTTCCTTCTTTTTCTCTTCATAGCTTTTCGCTATTTCGTCTCCTAGTCTCCCCCTTTTTCCCTGCCATCCGAAATTTGTTGCCCTTCTTTTTGCAGTTGTTTCTTTCCCACTTTGTATAGTAGTCTATTACTTCTTCTTTTCCAGCTGAAAAAATGGAACMACAACAAATGACTCTACTTTCAATTGAAACTGTTCTCAAGTTTACTCCAATTGAAAAACTTTGGCAGATGAGAATAGAGAATCCAGTTTTAAAAGAAATTTCAGATAAAGTTCCATATGATGAGATGAGGTTTGAAGATTATCAAAGATTACTGTAGAACGTTGATTTTTCAGAAAATGGATAATTGACGCAATCATCATAACAGACGACAGAATAGCTAGCAGAAGAGCAGAAGATTTTTTCGCAGAGCTGAAGTTTGTGAGTATCTTTGTAAGATTGAAACCACTTGAATATTATTTTATTAGATTCAAATCAAGGGAAGTAGACAAACTAGATGGCTTTCACCTAAATTTCTTCAACTGGCTACATCTTCTGAAATTCTGAAAGATTCTGTTCTTCCTGTTGCAAAAACGTTTTGTAAAGAAATCCTATCTGTAGGTTTTAAGTTTTTTTTTTTTTGAATTTTTTTTTGAAAACTCCATTTTCTTTCAGATTGATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGCATATTTTAACACAACACAT</pcr_primer_p1>
		<pcr_primer_p2>TCAATTGGAGTAAACTTGAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGCATATTTTAACACAACACATGTGTATTTTTATTTTCCTTCTTTTTCTCTTCATAGCTTTTCGCTATTTCGTCTCCTAGTCTCCCCCTTTTTCCCTGCCATCCGAAATTTGTTGCCCTTCTTTTTGCAGTTGTTTCTTTCCCACTTTGTATAGTAGTCTATTACTTCTTCTTTTCCAGCTGAAAAAATGGAACAACAACAAATGACTCTACTTTCAATTGAAACTGTTCTCAAGTTTACTCCAATTGA</canonical_amplicon>
		<polymorphic_amplicon>TTGCATATTTTAACACAACACATGTGTATTTTTATTTTCCTTCTTTTTCTCTTCATAGCTTTTCGCTATTTCGTCTCCTAGTCTCCCCCTTTTTCCCTGCCATCCGAAATTTGTTGCCCTTCTTTTTGCAGTTGTTTCTTTCCCACTTTGTATAGTAGTCTATTACTTCTTCTTTTCCAGCTGAAAAAATGGAACMACAACAAATGACTCTACTTTCAATTGAAACTGTTCTCAAGTTTACTCCAATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23433</snp_id>
        <super_contig>c000000925.Contig1</super_contig>
        <contig_pos>51038</contig_pos>
        <strand>+</strand>
        <context>TACTGTAGAA[C/T]GTTGATTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTCCATATGATGAGATGAGGTTTGAAGATTATCAAAGATTACTGTAGAA</left_flank>
        <right_flank>GTTGATTTTTCAGAAAATGGATAATTGACGCAATCATCATAACAGACGAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCAGATTTCCAATATTCACAATACGATATGAAAGCATTTATAAATTCCAGTTTTTTCTATTCCAAAAATCATTTTCTCTTTTTTGCTTCTCTCCGATTTCTTGTTGACATTGTTTCTCTCATCTCTCTCTCTCTATTCTCACTTGCATATTTTAACACAACACATGTGTATTTTTATTTTCCTTCTTTTTCTCTTCATAGCTTTTCGCTATTTCGTCTCCTAGTCTCCCCCTTTTTCCCTGCCATCCGAAATTTGTTGCCCTTCTTTTTGCAGTTGTTTCTTTCCCACTTTGTATAGTAGTCTATTACTTCTTCTTTTCCAGCTGAAAAAATGGAACAACAACAAATGACTCTACTTTCAATTGAAACTGTTCTCAAGTTTACTCCAATTGAAAAACTTTGGCAGATGAGAATAGAGAATCCAGTTTTAAAAGAAATTTCAGATAAAGTTCCATATGATGAGATGAGGTTTGAAGATTATCAAAGATTACTGTAGAACGTTGATTTTTCAGAAAATGGATAATTGACGCAATCATCATAACAGACGACAGAATAGCTAGCAGAAGAGCAGAAGATTTTTTCGCAGAGCTGAAGTTTGTGAGTATCTTTGTAAGATTGAAACCACTTGAATATTATTTTATTAGATTCAAATCAAGGGAAGTAGACAAACTAGATGGCTTTCACCTAAATTTCTTCAACTGGCTACATCTTCTGAAATTCTGAAAGATTCTGTTCTTCCTGTTGCAAAAACGTTTTGTAAAGAAATCCTATCTGTAGGTTTTAAGTTTTTTTTTTTTTGAATTTTTTTTTGAAAACTCCATTTTCTTTCAGATTGATATATCGGAAATGAATGAGGAGTTTCTGAAATCTGTTTTCCAGTTGTTTCCATTTTGTCTAGAATTAGGAGCAGTGAGGTAAGCATGGGTATTCAAGTAGATTAGAATGTATTGAAAAACTTTGCAGCATGCACATTAAAAATTTGAAGGAAAATTCATTGCT</canonical>
            <polymorphic>CTCCAGATTTCCAATATTCACAATACGATATGAAAGCATTTATAAATTCCAGTTTTTTCTATTCCAAAAATCATTTTCTCTTTTTTGCTTCTCTCCGATTTCTTGTTGACATTGTTTCTCTCATCTCTCTCTCTCTATTCTCACTTGCATATTTTAACACAACACATGTGTATTTTTATTTTCCTTCTTTTTCTCTTCATAGCTTTTCGCTATTTCGTCTCCTAGTCTCCCCCTTTTTCCCTGCCATCCGAAATTTGTTGCCCTTCTTTTTGCAGTTGTTTCTTTCCCACTTTGTATAGTAGTCTATTACTTCTTCTTTTCCAGCTGAAAAAATGGAACAACAACAAATGACTCTACTTTCAATTGAAACTGTTCTCAAGTTTACTCCAATTGAAAAACTTTGGCAGATGAGAATAGAGAATCCAGTTTTAAAAGAAATTTCAGATAAAGTTCCATATGATGAGATGAGGTTTGAAGATTATCAAAGATTACTGTAGAAYGTTGATTTTTCAGAAAATGGATAATTGACGCAATCATCATAACAGACGACAGAATAGCTAGCAGAAGAGCAGAAGATTTTTTCGCAGAGCTGAAGTTTGTGAGTATCTTTGTAAGATTGAAACCACTTGAATATTATTTTATTAGATTCAAATCAAGGGAAGTAGACAAACTAGATGGCTTTCACCTAAATTTCTTCAACTGGCTACATCTTCTGAAATTCTGAAAGATTCTGTTCTTCCTGTTGCAAAAACGTTTTGTAAAGAAATCCTATCTGTAGGTTTTAAGTTTTTTTTTTTTTGAATTTTTTTTTGAAAACTCCATTTTCTTTCAGATTGATATATCGGAAATGAATGAGGAGTTTCTGAAATCTGTTTTCCAGTTGTTTCCATTTTGTCTAGAATTAGGAGCAGTGAGGTAAGCATGGGTATTCAAGTAGATTAGAATGTATTGAAAAACTTTGCAGCATGCACATTAAAAATTTGAAGGAAAATTCATTGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>499 252 249</canonical_bands>
                <polymorphic_bands>751 249</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>499 252 249</canonical_bands>
                <polymorphic_bands>751 249</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAGTTTTAAAAGAAATTTCAGA</pcr_primer_p1>
		<pcr_primer_p2>AGTTTGTCTACTTCCCTTGATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAGTTTTAAAAGAAATTTCAGATAAAGTTCCATATGATGAGATGAGGTTTGAAGATTATCAAAGATTACTGTAGAACGTTGATTTTTCAGAAAATGGATAATTGACGCAATCATCATAACAGACGACAGAATAGCTAGCAGAAGAGCAGAAGATTTTTTCGCAGAGCTGAAGTTTGTGAGTATCTTTGTAAGATTGAAACCACTTGAATATTATTTTATTAGATTCAAATCAAGGGAAGTAGACAAACT</canonical_amplicon>
		<polymorphic_amplicon>CCAGTTTTAAAAGAAATTTCAGATAAAGTTCCATATGATGAGATGAGGTTTGAAGATTATCAAAGATTACTGTAGAAYGTTGATTTTTCAGAAAATGGATAATTGACGCAATCATCATAACAGACGACAGAATAGCTAGCAGAAGAGCAGAAGATTTTTTCGCAGAGCTGAAGTTTGTGAGTATCTTTGTAAGATTGAAACCACTTGAATATTATTTTATTAGATTCAAATCAAGGGAAGTAGACAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23434</snp_id>
        <super_contig>c000000925.Contig1</super_contig>
        <contig_pos>51222</contig_pos>
        <strand>+</strand>
        <context>GATGGCTTTC[A/C]CCTAAATTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTATTTTATTAGATTCAAATCAAGGGAAGTAGACAAACTAGATGGCTTTC</left_flank>
        <right_flank>CCTAAATTTCTTCAACTGGCTACATCTTCTGAAATTCTGAAAGATTCTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTTTTCTCTTCATAGCTTTTCGCTATTTCGTCTCCTAGTCTCCCCCTTTTTCCCTGCCATCCGAAATTTGTTGCCCTTCTTTTTGCAGTTGTTTCTTTCCCACTTTGTATAGTAGTCTATTACTTCTTCTTTTCCAGCTGAAAAAATGGAACAACAACAAATGACTCTACTTTCAATTGAAACTGTTCTCAAGTTTACTCCAATTGAAAAACTTTGGCAGATGAGAATAGAGAATCCAGTTTTAAAAGAAATTTCAGATAAAGTTCCATATGATGAGATGAGGTTTGAAGATTATCAAAGATTACTGTAGAACGTTGATTTTTCAGAAAATGGATAATTGACGCAATCATCATAACAGACGACAGAATAGCTAGCAGAAGAGCAGAAGATTTTTTCGCAGAGCTGAAGTTTGTGAGTATCTTTGTAAGATTGAAACCACTTGAATATTATTTTATTAGATTCAAATCAAGGGAAGTAGACAAACTAGATGGCTTTCACCTAAATTTCTTCAACTGGCTACATCTTCTGAAATTCTGAAAGATTCTGTTCTTCCTGTTGCAAAAACGTTTTGTAAAGAAATCCTATCTGTAGGTTTTAAGTTTTTTTTTTTTTGAATTTTTTTTTGAAAACTCCATTTTCTTTCAGATTGATATATCGGAAATGAATGAGGAGTTTCTGAAATCTGTTTTCCAGTTGTTTCCATTTTGTCTAGAATTAGGAGCAGTGAGGTAAGCATGGGTATTCAAGTAGATTAGAATGTATTGAAAAACTTTGCAGCATGCACATTAAAAATTTGAAGGAAAATTCATTGCTAGAATGTGTGAAGTGGCTGAAGAAGATTGATATTAAAAGTGGAATCTGTATGAGGTAATTTTTCAAATTCGATGTACCATAAAATAGAAGGGTCCCTTAGTTTTCAACTTTGAGTCAATTTGTCTCGGTTCCTGTAAAAGATATGGAAATGTTGTCAACTGATAAATTGTTTATCATAATATCA</canonical>
            <polymorphic>TTCTTTTTCTCTTCATAGCTTTTCGCTATTTCGTCTCCTAGTCTCCCCCTTTTTCCCTGCCATCCGAAATTTGTTGCCCTTCTTTTTGCAGTTGTTTCTTTCCCACTTTGTATAGTAGTCTATTACTTCTTCTTTTCCAGCTGAAAAAATGGAACAACAACAAATGACTCTACTTTCAATTGAAACTGTTCTCAAGTTTACTCCAATTGAAAAACTTTGGCAGATGAGAATAGAGAATCCAGTTTTAAAAGAAATTTCAGATAAAGTTCCATATGATGAGATGAGGTTTGAAGATTATCAAAGATTACTGTAGAACGTTGATTTTTCAGAAAATGGATAATTGACGCAATCATCATAACAGACGACAGAATAGCTAGCAGAAGAGCAGAAGATTTTTTCGCAGAGCTGAAGTTTGTGAGTATCTTTGTAAGATTGAAACCACTTGAATATTATTTTATTAGATTCAAATCAAGGGAAGTAGACAAACTAGATGGCTTTCMCCTAAATTTCTTCAACTGGCTACATCTTCTGAAATTCTGAAAGATTCTGTTCTTCCTGTTGCAAAAACGTTTTGTAAAGAAATCCTATCTGTAGGTTTTAAGTTTTTTTTTTTTTGAATTTTTTTTTGAAAACTCCATTTTCTTTCAGATTGATATATCGGAAATGAATGAGGAGTTTCTGAAATCTGTTTTCCAGTTGTTTCCATTTTGTCTAGAATTAGGAGCAGTGAGGTAAGCATGGGTATTCAAGTAGATTAGAATGTATTGAAAAACTTTGCAGCATGCACATTAAAAATTTGAAGGAAAATTCATTGCTAGAATGTGTGAAGTGGCTGAAGAAGATTGATATTAAAAGTGGAATCTGTATGAGGTAATTTTTCAAATTCGATGTACCATAAAATAGAAGGGTCCCTTAGTTTTCAACTTTGAGTCAATTTGTCTCGGTTCCTGTAAAAGATATGGAAATGTTGTCAACTGATAAATTGTTTATCATAATATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>312 229 143 105 59 57 38 26 24 5 2</canonical_bands>
                <polymorphic_bands>312 288 143 105 57 38 26 24 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTGAAGTTTGTGAGTATCTTTG</pcr_primer_p1>
		<pcr_primer_p2>ATCAATCTGAAAGAAAATGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTGAAGTTTGTGAGTATCTTTGTAAGATTGAAACCACTTGAATATTATTTTATTAGATTCAAATCAAGGGAAGTAGACAAACTAGATGGCTTTCACCTAAATTTCTTCAACTGGCTACATCTTCTGAAATTCTGAAAGATTCTGTTCTTCCTGTTGCAAAAACGTTTTGTAAAGAAATCCTATCTGTAGGTTTTAAGTTTTTTTTTTTTTGAATTTTTTTTTGAAAACTCCATTTTCTTTCAGATTGAT</canonical_amplicon>
		<polymorphic_amplicon>GCTGAAGTTTGTGAGTATCTTTGTAAGATTGAAACCACTTGAATATTATTTTATTAGATTCAAATCAAGGGAAGTAGACAAACTAGATGGCTTTCMCCTAAATTTCTTCAACTGGCTACATCTTCTGAAATTCTGAAAGATTCTGTTCTTCCTGTTGCAAAAACGTTTTGTAAAGAAATCCTATCTGTAGGTTTTAAGTTTTTTTTTTTTTGAATTTTTTTTTGAAAACTCCATTTTCTTTCAGATTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23435</snp_id>
        <super_contig>c000000925.Contig1</super_contig>
        <contig_pos>51258</contig_pos>
        <strand>+</strand>
        <context>CTTCTGAAAT[C/T]CTGAAAGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTAGATGGCTTTCACCTAAATTTCTTCAACTGGCTACATCTTCTGAAAT</left_flank>
        <right_flank>CTGAAAGATTCTGTTCTTCCTGTTGCAAAAACGTTTTGTAAAGAAATCCT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTAGTCTCCCCCTTTTTCCCTGCCATCCGAAATTTGTTGCCCTTCTTTTTGCAGTTGTTTCTTTCCCACTTTGTATAGTAGTCTATTACTTCTTCTTTTCCAGCTGAAAAAATGGAACAACAACAAATGACTCTACTTTCAATTGAAACTGTTCTCAAGTTTACTCCAATTGAAAAACTTTGGCAGATGAGAATAGAGAATCCAGTTTTAAAAGAAATTTCAGATAAAGTTCCATATGATGAGATGAGGTTTGAAGATTATCAAAGATTACTGTAGAACGTTGATTTTTCAGAAAATGGATAATTGACGCAATCATCATAACAGACGACAGAATAGCTAGCAGAAGAGCAGAAGATTTTTTCGCAGAGCTGAAGTTTGTGAGTATCTTTGTAAGATTGAAACCACTTGAATATTATTTTATTAGATTCAAATCAAGGGAAGTAGACAAACTAGATGGCTTTCACCTAAATTTCTTCAACTGGCTACATCTTCTGAAATTCTGAAAGATTCTGTTCTTCCTGTTGCAAAAACGTTTTGTAAAGAAATCCTATCTGTAGGTTTTAAGTTTTTTTTTTTTTGAATTTTTTTTTGAAAACTCCATTTTCTTTCAGATTGATATATCGGAAATGAATGAGGAGTTTCTGAAATCTGTTTTCCAGTTGTTTCCATTTTGTCTAGAATTAGGAGCAGTGAGGTAAGCATGGGTATTCAAGTAGATTAGAATGTATTGAAAAACTTTGCAGCATGCACATTAAAAATTTGAAGGAAAATTCATTGCTAGAATGTGTGAAGTGGCTGAAGAAGATTGATATTAAAAGTGGAATCTGTATGAGGTAATTTTTCAAATTCGATGTACCATAAAATAGAAGGGTCCCTTAGTTTTCAACTTTGAGTCAATTTGTCTCGGTTCCTGTAAAAGATATGGAAATGTTGTCAACTGATAAATTGTTTATCATAATATCAACAACATTTTGATAGTTAATCAATTTTGGACATCTG</canonical>
            <polymorphic>CCTAGTCTCCCCCTTTTTCCCTGCCATCCGAAATTTGTTGCCCTTCTTTTTGCAGTTGTTTCTTTCCCACTTTGTATAGTAGTCTATTACTTCTTCTTTTCCAGCTGAAAAAATGGAACAACAACAAATGACTCTACTTTCAATTGAAACTGTTCTCAAGTTTACTCCAATTGAAAAACTTTGGCAGATGAGAATAGAGAATCCAGTTTTAAAAGAAATTTCAGATAAAGTTCCATATGATGAGATGAGGTTTGAAGATTATCAAAGATTACTGTAGAACGTTGATTTTTCAGAAAATGGATAATTGACGCAATCATCATAACAGACGACAGAATAGCTAGCAGAAGAGCAGAAGATTTTTTCGCAGAGCTGAAGTTTGTGAGTATCTTTGTAAGATTGAAACCACTTGAATATTATTTTATTAGATTCAAATCAAGGGAAGTAGACAAACTAGATGGCTTTCACCTAAATTTCTTCAACTGGCTACATCTTCTGAAATYCTGAAAGATTCTGTTCTTCCTGTTGCAAAAACGTTTTGTAAAGAAATCCTATCTGTAGGTTTTAAGTTTTTTTTTTTTTGAATTTTTTTTTGAAAACTCCATTTTCTTTCAGATTGATATATCGGAAATGAATGAGGAGTTTCTGAAATCTGTTTTCCAGTTGTTTCCATTTTGTCTAGAATTAGGAGCAGTGAGGTAAGCATGGGTATTCAAGTAGATTAGAATGTATTGAAAAACTTTGCAGCATGCACATTAAAAATTTGAAGGAAAATTCATTGCTAGAATGTGTGAAGTGGCTGAAGAAGATTGATATTAAAAGTGGAATCTGTATGAGGTAATTTTTCAAATTCGATGTACCATAAAATAGAAGGGTCCCTTAGTTTTCAACTTTGAGTCAATTTGTCTCGGTTCCTGTAAAAGATATGGAAATGTTGTCAACTGATAAATTGTTTATCATAATATCAACAACATTTTGATAGTTAATCAATTTTGGACATCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>252 185 177 155 84 76 31 28 12</canonical_bands>
                <polymorphic_bands>252 185 177 155 112 76 31 12</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>356 202 194 109 69 29 20 13 8</canonical_bands>
                <polymorphic_bands>356 202 194 117 69 29 20 13</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>166 110 99 86 84 78 67 51 48 48 41 31 28 27 15 12 9</canonical_bands>
                <polymorphic_bands>166 112 110 99 86 78 67 51 48 48 41 31 27 15 12 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAGGGAAGTAGACAAACTAGA</pcr_primer_p1>
		<pcr_primer_p2>TTCTAGACAAAATGGAAACAACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCAAGGGAAGTAGACAAACTAGATGGCTTTCACCTAAATTTCTTCAACTGGCTACATCTTCTGAAATTCTGAAAGATTCTGTTCTTCCTGTTGCAAAAACGTTTTGTAAAGAAATCCTATCTGTAGGTTTTAAGTTTTTTTTTTTTTGAATTTTTTTTTGAAAACTCCATTTTCTTTCAGATTGATATATCGGAAATGAATGAGGAGTTTCTGAAATCTGTTTTCCAGTTGTTTCCATTTTGTCTAGAA</canonical_amplicon>
		<polymorphic_amplicon>TCAAGGGAAGTAGACAAACTAGATGGCTTTCACCTAAATTTCTTCAACTGGCTACATCTTCTGAAATYCTGAAAGATTCTGTTCTTCCTGTTGCAAAAACGTTTTGTAAAGAAATCCTATCTGTAGGTTTTAAGTTTTTTTTTTTTTGAATTTTTTTTTGAAAACTCCATTTTCTTTCAGATTGATATATCGGAAATGAATGAGGAGTTTCTGAAATCTGTTTTCCAGTTGTTTCCATTTTGTCTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23436</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>2969</contig_pos>
        <strand>+</strand>
        <context>GCTTTCAGAT[C/T]TACGCTTTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAGGTAACTTGGAAGTCTTTGATGGACTCAAAAACAAAAGCTTTCAGAT</left_flank>
        <right_flank>TACGCTTTGAAACCATTCGATGATGAGAACACTTTGAAAGCTTACATCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTCTTTGTATACGGCAGCCGATGGTCTGCTTGGAACCCATGTAACATGGGGAGAAGTTGAAGAACAGATGCAGAAAGCGTTGGATACTTCTGCCAAGTTTGGAGATGACAAGACTGTTACAAACATTAGTGATATGAAGGTAAGTCTAACAATCAATATTAATGAATAGCTCACTACGTTTCAGGGATTCATGTCAAGAATTGCTCTTGTTGAGCCGCATTGGGTTGGAGCTTCTGATGATGAAGAGCTTCCTGAGAAGTTCATTGTCAAAATTTCTTCTCAACTTCCTTTCATTGAAATGACAAAACTGATGGACTTTAATGCTGAGGAGTTTTGGGATGATGCGAAATTGAAAGGAATGGGAGATATGACACGTATGCTGCATAACAGAGAAGTATCAACTTACAAGATTTTGATGAGAGAAAAGCATCCGAGAATTCCTTTCACCAAGGTAACTTGGAAGTCTTTGATGGACTCAAAAACAAAAGCTTTCAGATCTACGCTTTGAAACCATTCGATGATGAGAACACTTTGAAAGCTTACATCATCTCGGAGTACATTCCAGACCTTCATCATATTGGAATGCATGAAAGTATTTCAGCTGAAGACCTTCTTCCAATTGTCCACGCAATCGCCGCATTTTCTGCCTTCGGAATGAAATTGAGTGAAGAGGAGACTAAATATGCTCAAGGAGCTGATTTCCTTGACATTGTCTTCGGTCAATTCATGGACGAAAAAACGATAACAAAATCTGAAGATATGATGAGAGCTGCATTTTCGGCTGATTACTCTGAAAAGGTTGAGAAAATGCTGAAAATCAATAGAGATTACTATTTGAATCCGAAAATGTTATCAAACTTCAAGAAGACTTGCGATTTCTTTGGATACAAGCCAGTTCTCACTCATTCTGATTTGTGGAGTTCCAACTTTTTGTGCAGTCGAGATGGGGAGAAAGTAACACTAAGAGCTATCATTGATTATCAGGTACCTTTTGATAT</canonical>
            <polymorphic>ATGTCTTTGTATACGGCAGCCGATGGTCTGCTTGGAACCCATGTAACATGGGGAGAAGTTGAAGAACAGATGCAGAAAGCGTTGGATACTTCTGCCAAGTTTGGAGATGACAAGACTGTTACAAACATTAGTGATATGAAGGTAAGTCTAACAATCAATATTAATGAATAGCTCACTACGTTTCAGGGATTCATGTCAAGAATTGCTCTTGTTGAGCCGCATTGGGTTGGAGCTTCTGATGATGAAGAGCTTCCTGAGAAGTTCATTGTCAAAATTTCTTCTCAACTTCCTTTCATTGAAATGACAAAACTGATGGACTTTAATGCTGAGGAGTTTTGGGATGATGCGAAATTGAAAGGAATGGGAGATATGACACGTATGCTGCATAACAGAGAAGTATCAACTTACAAGATTTTGATGAGAGAAAAGCATCCGAGAATTCCTTTCACCAAGGTAACTTGGAAGTCTTTGATGGACTCAAAAACAAAAGCTTTCAGATYTACGCTTTGAAACCATTCGATGATGAGAACACTTTGAAAGCTTACATCATCTCGGAGTACATTCCAGACCTTCATCATATTGGAATGCATGAAAGTATTTCAGCTGAAGACCTTCTTCCAATTGTCCACGCAATCGCCGCATTTTCTGCCTTCGGAATGAAATTGAGTGAAGAGGAGACTAAATATGCTCAAGGAGCTGATTTCCTTGACATTGTCTTCGGTCAATTCATGGACGAAAAAACGATAACAAAATCTGAAGATATGATGAGAGCTGCATTTTCGGCTGATTACTCTGAAAAGGTTGAGAAAATGCTGAAAATCAATAGAGATTACTATTTGAATCCGAAAATGTTATCAAACTTCAAGAAGACTTGCGATTTCTTTGGATACAAGCCAGTTCTCACTCATTCTGATTTGTGGAGTTCCAACTTTTTGTGCAGTCGAGATGGGGAGAAAGTAACACTAAGAGCTATCATTGATTATCAGGTACCTTTTGATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGCTGCATAACAGAGAAGTATC</pcr_primer_p1>
		<pcr_primer_p2>GGACAATTGGAAGAAGGTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGCTGCATAACAGAGAAGTATCAACTTACAAGATTTTGATGAGAGAAAAGCATCCGAGAATTCCTTTCACCAAGGTAACTTGGAAGTCTTTGATGGACTCAAAAACAAAAGCTTTCAGATCTACGCTTTGAAACCATTCGATGATGAGAACACTTTGAAAGCTTACATCATCTCGGAGTACATTCCAGACCTTCATCATATTGGAATGCATGAAAGTATTTCAGCTGAAGACCTTCTTCCAATTGTCC</canonical_amplicon>
		<polymorphic_amplicon>ATGCTGCATAACAGAGAAGTATCAACTTACAAGATTTTGATGAGAGAAAAGCATCCGAGAATTCCTTTCACCAAGGTAACTTGGAAGTCTTTGATGGACTCAAAAACAAAAGCTTTCAGATYTACGCTTTGAAACCATTCGATGATGAGAACACTTTGAAAGCTTACATCATCTCGGAGTACATTCCAGACCTTCATCATATTGGAATGCATGAAAGTATTTCAGCTGAAGACCTTCTTCCAATTGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23437</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>3013</contig_pos>
        <strand>+</strand>
        <context>TTGAAAGCTT[A/G]CATCATCTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAGATCTACGCTTTGAAACCATTCGATGATGAGAACACTTTGAAAGCTT</left_flank>
        <right_flank>CATCATCTCGGAGTACATTCCAGACCTTCATCATATTGGAATGCATGAAA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACATGGGGAGAAGTTGAAGAACAGATGCAGAAAGCGTTGGATACTTCTGCCAAGTTTGGAGATGACAAGACTGTTACAAACATTAGTGATATGAAGGTAAGTCTAACAATCAATATTAATGAATAGCTCACTACGTTTCAGGGATTCATGTCAAGAATTGCTCTTGTTGAGCCGCATTGGGTTGGAGCTTCTGATGATGAAGAGCTTCCTGAGAAGTTCATTGTCAAAATTTCTTCTCAACTTCCTTTCATTGAAATGACAAAACTGATGGACTTTAATGCTGAGGAGTTTTGGGATGATGCGAAATTGAAAGGAATGGGAGATATGACACGTATGCTGCATAACAGAGAAGTATCAACTTACAAGATTTTGATGAGAGAAAAGCATCCGAGAATTCCTTTCACCAAGGTAACTTGGAAGTCTTTGATGGACTCAAAAACAAAAGCTTTCAGATCTACGCTTTGAAACCATTCGATGATGAGAACACTTTGAAAGCTTACATCATCTCGGAGTACATTCCAGACCTTCATCATATTGGAATGCATGAAAGTATTTCAGCTGAAGACCTTCTTCCAATTGTCCACGCAATCGCCGCATTTTCTGCCTTCGGAATGAAATTGAGTGAAGAGGAGACTAAATATGCTCAAGGAGCTGATTTCCTTGACATTGTCTTCGGTCAATTCATGGACGAAAAAACGATAACAAAATCTGAAGATATGATGAGAGCTGCATTTTCGGCTGATTACTCTGAAAAGGTTGAGAAAATGCTGAAAATCAATAGAGATTACTATTTGAATCCGAAAATGTTATCAAACTTCAAGAAGACTTGCGATTTCTTTGGATACAAGCCAGTTCTCACTCATTCTGATTTGTGGAGTTCCAACTTTTTGTGCAGTCGAGATGGGGAGAAAGTAACACTAAGAGCTATCATTGATTATCAGGTACCTTTTGATATCATGTATTCCTTTATTCAGTTTTTTTTTTCAGACTGTAACAGTT</canonical>
            <polymorphic>AACATGGGGAGAAGTTGAAGAACAGATGCAGAAAGCGTTGGATACTTCTGCCAAGTTTGGAGATGACAAGACTGTTACAAACATTAGTGATATGAAGGTAAGTCTAACAATCAATATTAATGAATAGCTCACTACGTTTCAGGGATTCATGTCAAGAATTGCTCTTGTTGAGCCGCATTGGGTTGGAGCTTCTGATGATGAAGAGCTTCCTGAGAAGTTCATTGTCAAAATTTCTTCTCAACTTCCTTTCATTGAAATGACAAAACTGATGGACTTTAATGCTGAGGAGTTTTGGGATGATGCGAAATTGAAAGGAATGGGAGATATGACACGTATGCTGCATAACAGAGAAGTATCAACTTACAAGATTTTGATGAGAGAAAAGCATCCGAGAATTCCTTTCACCAAGGTAACTTGGAAGTCTTTGATGGACTCAAAAACAAAAGCTTTCAGATCTACGCTTTGAAACCATTCGATGATGAGAACACTTTGAAAGCTTRCATCATCTCGGAGTACATTCCAGACCTTCATCATATTGGAATGCATGAAAGTATTTCAGCTGAAGACCTTCTTCCAATTGTCCACGCAATCGCCGCATTTTCTGCCTTCGGAATGAAATTGAGTGAAGAGGAGACTAAATATGCTCAAGGAGCTGATTTCCTTGACATTGTCTTCGGTCAATTCATGGACGAAAAAACGATAACAAAATCTGAAGATATGATGAGAGCTGCATTTTCGGCTGATTACTCTGAAAAGGTTGAGAAAATGCTGAAAATCAATAGAGATTACTATTTGAATCCGAAAATGTTATCAAACTTCAAGAAGACTTGCGATTTCTTTGGATACAAGCCAGTTCTCACTCATTCTGATTTGTGGAGTTCCAACTTTTTGTGCAGTCGAGATGGGGAGAAAGTAACACTAAGAGCTATCATTGATTATCAGGTACCTTTTGATATCATGTATTCCTTTATTCAGTTTTTTTTTTCAGACTGTAACAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGTAACTTGGAAGTCTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>AGCTCCTTGAGCATATTTAGTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGGTAACTTGGAAGTCTTTGATGGACTCAAAAACAAAAGCTTTCAGATCTACGCTTTGAAACCATTCGATGATGAGAACACTTTGAAAGCTTACATCATCTCGGAGTACATTCCAGACCTTCATCATATTGGAATGCATGAAAGTATTTCAGCTGAAGACCTTCTTCCAATTGTCCACGCAATCGCCGCATTTTCTGCCTTCGGAATGAAATTGAGTGAAGAGGAGACTAAATATGCTCAAGGAGCT</canonical_amplicon>
		<polymorphic_amplicon>AAGGTAACTTGGAAGTCTTTGATGGACTCAAAAACAAAAGCTTTCAGATCTACGCTTTGAAACCATTCGATGATGAGAACACTTTGAAAGCTTRCATCATCTCGGAGTACATTCCAGACCTTCATCATATTGGAATGCATGAAAGTATTTCAGCTGAAGACCTTCTTCCAATTGTCCACGCAATCGCCGCATTTTCTGCCTTCGGAATGAAATTGAGTGAAGAGGAGACTAAATATGCTCAAGGAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23438</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>3115</contig_pos>
        <strand>+</strand>
        <context>GCCGCATTTT[C/G]TGCCWTCGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TATTTCAGCTGAAGACCTTCTTCCAATTGTCCACGCAATCGCCGCATTTT</left_flank>
        <right_flank>TGCCTTCGGAATGAAATTGAGTGAAGAGGAGACTAAATATGCTCAAGGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAACAATCAATATTAATGAATAGCTCACTACGTTTCAGGGATTCATGTCAAGAATTGCTCTTGTTGAGCCGCATTGGGTTGGAGCTTCTGATGATGAAGAGCTTCCTGAGAAGTTCATTGTCAAAATTTCTTCTCAACTTCCTTTCATTGAAATGACAAAACTGATGGACTTTAATGCTGAGGAGTTTTGGGATGATGCGAAATTGAAAGGAATGGGAGATATGACACGTATGCTGCATAACAGAGAAGTATCAACTTACAAGATTTTGATGAGAGAAAAGCATCCGAGAATTCCTTTCACCAAGGTAACTTGGAAGTCTTTGATGGACTCAAAAACAAAAGCTTTCAGATCTACGCTTTGAAACCATTCGATGATGAGAACACTTTGAAAGCTTACATCATCTCGGAGTACATTCCAGACCTTCATCATATTGGAATGCATGAAAGTATTTCAGCTGAAGACCTTCTTCCAATTGTCCACGCAATCGCCGCATTTTCTGCCTTCGGAATGAAATTGAGTGAAGAGGAGACTAAATATGCTCAAGGAGCTGATTTCCTTGACATTGTCTTCGGTCAATTCATGGACGAAAAAACGATAACAAAATCTGAAGATATGATGAGAGCTGCATTTTCGGCTGATTACTCTGAAAAGGTTGAGAAAATGCTGAAAATCAATAGAGATTACTATTTGAATCCGAAAATGTTATCAAACTTCAAGAAGACTTGCGATTTCTTTGGATACAAGCCAGTTCTCACTCATTCTGATTTGTGGAGTTCCAACTTTTTGTGCAGTCGAGATGGGGAGAAAGTAACACTAAGAGCTATCATTGATTATCAGGTACCTTTTGATATCATGTATTCCTTTATTCAGTTTTTTTTTTCAGACTGTAACAGTTACAACTCCTGCACAAGACGTTGGAAGATTGTTTGCATCCTGCTTATCGACCAAAGACAGAAGAGAAAAAGTAGATTTCTTGCTGGAGGAATACTACAAAACA</canonical>
            <polymorphic>TCTAACAATCAATATTAATGAATAGCTCACTACGTTTCAGGGATTCATGTCAAGAATTGCTCTTGTTGAGCCGCATTGGGTTGGAGCTTCTGATGATGAAGAGCTTCCTGAGAAGTTCATTGTCAAAATTTCTTCTCAACTTCCTTTCATTGAAATGACAAAACTGATGGACTTTAATGCTGAGGAGTTTTGGGATGATGCGAAATTGAAAGGAATGGGAGATATGACACGTATGCTGCATAACAGAGAAGTATCAACTTACAAGATTTTGATGAGAGAAAAGCATCCGAGAATTCCTTTCACCAAGGTAACTTGGAAGTCTTTGATGGACTCAAAAACAAAAGCTTTCAGATCTACGCTTTGAAACCATTCGATGATGAGAACACTTTGAAAGCTTACATCATCTCGGAGTACATTCCAGACCTTCATCATATTGGAATGCATGAAAGTATTTCAGCTGAAGACCTTCTTCCAATTGTCCACGCAATCGCCGCATTTTSTGCCTTCGGAATGAAATTGAGTGAAGAGGAGACTAAATATGCTCAAGGAGCTGATTTCCTTGACATTGTCTTCGGTCAATTCATGGACGAAAAAACGATAACAAAATCTGAAGATATGATGAGAGCTGCATTTTCGGCTGATTACTCTGAAAAGGTTGAGAAAATGCTGAAAATCAATAGAGATTACTATTTGAATCCGAAAATGTTATCAAACTTCAAGAAGACTTGCGATTTCTTTGGATACAAGCCAGTTCTCACTCATTCTGATTTGTGGAGTTCCAACTTTTTGTGCAGTCGAGATGGGGAGAAAGTAACACTAAGAGCTATCATTGATTATCAGGTACCTTTTGATATCATGTATTCCTTTATTCAGTTTTTTTTTTCAGACTGTAACAGTTACAACTCCTGCACAAGACGTTGGAAGATTGTTTGCATCCTGCTTATCGACCAAAGACAGAAGAGAAAAAGTAGATTTCTTGCTGGAGGAATACTACAAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACATTCCAGACCTTCATCATA</pcr_primer_p1>
		<pcr_primer_p2>TCTCAACCTTTTCAGAGTAATCA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTACATTCCAGACCTTCATCATATTGGAATGCATGAAAGTATTTCAGCTGAAGACCTTCTTCCAATTGTCCACGCAATCGCCGCATTTTCTGCCTTCGGAATGAAATTGAGTGAAGAGGAGACTAAATATGCTCAAGGAGCTGATTTCCTTGACATTGTCTTCGGTCAATTCATGGACGAAAAAACGATAACAAAATCTGAAGATATGATGAGAGCTGCATTTTCGGCTGATTACTCTGAAAAGGTTGAGA</canonical_amplicon>
		<polymorphic_amplicon>GTACATTCCAGACCTTCATCATATTGGAATGCATGAAAGTATTTCAGCTGAAGACCTTCTTCCAATTGTCCACGCAATCGCCGCATTTTSTGCCTTCGGAATGAAATTGAGTGAAGAGGAGACTAAATATGCTCAAGGAGCTGATTTCCTTGACATTGTCTTCGGTCAATTCATGGACGAAAAAACGATAACAAAATCTGAAGATATGATGAGAGCTGCATTTTCGGCTGATTACTCTGAAAAGGTTGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23439</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>3120</contig_pos>
        <strand>+</strand>
        <context>ATTTTSTGCC[A/T]TCGGAATGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGCTGAAGACCTTCTTCCAATTGTCCACGCAATCGCCGCATTTTCTGCC</left_flank>
        <right_flank>TCGGAATGAAATTGAGTGAAGAGGAGACTAAATATGCTCAAGGAGCTGAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATCAATATTAATGAATAGCTCACTACGTTTCAGGGATTCATGTCAAGAATTGCTCTTGTTGAGCCGCATTGGGTTGGAGCTTCTGATGATGAAGAGCTTCCTGAGAAGTTCATTGTCAAAATTTCTTCTCAACTTCCTTTCATTGAAATGACAAAACTGATGGACTTTAATGCTGAGGAGTTTTGGGATGATGCGAAATTGAAAGGAATGGGAGATATGACACGTATGCTGCATAACAGAGAAGTATCAACTTACAAGATTTTGATGAGAGAAAAGCATCCGAGAATTCCTTTCACCAAGGTAACTTGGAAGTCTTTGATGGACTCAAAAACAAAAGCTTTCAGATCTACGCTTTGAAACCATTCGATGATGAGAACACTTTGAAAGCTTACATCATCTCGGAGTACATTCCAGACCTTCATCATATTGGAATGCATGAAAGTATTTCAGCTGAAGACCTTCTTCCAATTGTCCACGCAATCGCCGCATTTTCTGCCTTCGGAATGAAATTGAGTGAAGAGGAGACTAAATATGCTCAAGGAGCTGATTTCCTTGACATTGTCTTCGGTCAATTCATGGACGAAAAAACGATAACAAAATCTGAAGATATGATGAGAGCTGCATTTTCGGCTGATTACTCTGAAAAGGTTGAGAAAATGCTGAAAATCAATAGAGATTACTATTTGAATCCGAAAATGTTATCAAACTTCAAGAAGACTTGCGATTTCTTTGGATACAAGCCAGTTCTCACTCATTCTGATTTGTGGAGTTCCAACTTTTTGTGCAGTCGAGATGGGGAGAAAGTAACACTAAGAGCTATCATTGATTATCAGGTACCTTTTGATATCATGTATTCCTTTATTCAGTTTTTTTTTTCAGACTGTAACAGTTACAACTCCTGCACAAGACGTTGGAAGATTGTTTGCATCCTGCTTATCGACCAAAGACAGAAGAGAAAAAGTAGATTTCTTGCTGGAGGAATACTACAAAACATTCGT</canonical>
            <polymorphic>CAATCAATATTAATGAATAGCTCACTACGTTTCAGGGATTCATGTCAAGAATTGCTCTTGTTGAGCCGCATTGGGTTGGAGCTTCTGATGATGAAGAGCTTCCTGAGAAGTTCATTGTCAAAATTTCTTCTCAACTTCCTTTCATTGAAATGACAAAACTGATGGACTTTAATGCTGAGGAGTTTTGGGATGATGCGAAATTGAAAGGAATGGGAGATATGACACGTATGCTGCATAACAGAGAAGTATCAACTTACAAGATTTTGATGAGAGAAAAGCATCCGAGAATTCCTTTCACCAAGGTAACTTGGAAGTCTTTGATGGACTCAAAAACAAAAGCTTTCAGATCTACGCTTTGAAACCATTCGATGATGAGAACACTTTGAAAGCTTACATCATCTCGGAGTACATTCCAGACCTTCATCATATTGGAATGCATGAAAGTATTTCAGCTGAAGACCTTCTTCCAATTGTCCACGCAATCGCCGCATTTTCTGCCWTCGGAATGAAATTGAGTGAAGAGGAGACTAAATATGCTCAAGGAGCTGATTTCCTTGACATTGTCTTCGGTCAATTCATGGACGAAAAAACGATAACAAAATCTGAAGATATGATGAGAGCTGCATTTTCGGCTGATTACTCTGAAAAGGTTGAGAAAATGCTGAAAATCAATAGAGATTACTATTTGAATCCGAAAATGTTATCAAACTTCAAGAAGACTTGCGATTTCTTTGGATACAAGCCAGTTCTCACTCATTCTGATTTGTGGAGTTCCAACTTTTTGTGCAGTCGAGATGGGGAGAAAGTAACACTAAGAGCTATCATTGATTATCAGGTACCTTTTGATATCATGTATTCCTTTATTCAGTTTTTTTTTTCAGACTGTAACAGTTACAACTCCTGCACAAGACGTTGGAAGATTGTTTGCATCCTGCTTATCGACCAAAGACAGAAGAGAAAAAGTAGATTTCTTGCTGGAGGAATACTACAAAACATTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACATTCCAGACCTTCATCATA</pcr_primer_p1>
		<pcr_primer_p2>TCTCAACCTTTTCAGAGTAATCA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTACATTCCAGACCTTCATCATATTGGAATGCATGAAAGTATTTCAGCTGAAGACCTTCTTCCAATTGTCCACGCAATCGCCGCATTTTCTGCCTTCGGAATGAAATTGAGTGAAGAGGAGACTAAATATGCTCAAGGAGCTGATTTCCTTGACATTGTCTTCGGTCAATTCATGGACGAAAAAACGATAACAAAATCTGAAGATATGATGAGAGCTGCATTTTCGGCTGATTACTCTGAAAAGGTTGAGA</canonical_amplicon>
		<polymorphic_amplicon>GTACATTCCAGACCTTCATCATATTGGAATGCATGAAAGTATTTCAGCTGAAGACCTTCTTCCAATTGTCCACGCAATCGCCGCATTTTCTGCCWTCGGAATGAAATTGAGTGAAGAGGAGACTAAATATGCTCAAGGAGCTGATTTCCTTGACATTGTCTTCGGTCAATTCATGGACGAAAAAACGATAACAAAATCTGAAGATATGATGAGAGCTGCATTTTCGGCTGATTACTCTGAAAAGGTTGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23440</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>69515</contig_pos>
        <strand>+</strand>
        <context>AGTGTTGTTT[C/T]TAAATTCTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAGTTTTTGAATTATTCAACCACCAATGGAGACGTCGAAGTGTTGTTT</left_flank>
        <right_flank>TAAATTCTTACCAACATCACCCACAAACCACTTATAAGATTTATATAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTCCTTCAGAATTTCTTTTCCACTTCGTCGTCACCCAGAACGTTCTTCAGGACTGAGATGGTCAGAAGGACATGCAAAACAATTTTGTTTTGTCACATCTTCATGCTTCTCTTTCTTCTAACACTTGGTAGTGGTGGCGAAAAGCGATATGAAATATTCCATCTCAAATTCATAGATTCATTCATAGGTCGTCGTGGTCATGTCCGTCTGTCCGTCCGTCCCTTTTTCATCTTTCTCCTCTTCTCCTTCTTTCCACCGACACTTTATTCCTTCTTTTTCTTGGACCGCCTGTCACCAACTTTGATACTACGACTACTAGCTAGTAAGAATGCTATCCCACAACTCTTTGGGAGAAGGAAACAGAAAGTTGGAGTGACGACTAACTGGATTATTAGCCGTTTTTGATATATAGCCATTTTTCACCTGTTCCCCGAAATTTCGGCGTTTGAAAGTTTTTGAATTATTCAACCACCAATGGAGACGTCGAAGTGTTGTTTCTAAATTCTTACCAACATCACCCACAAACCACTTATAAGATTTATATAAAAGTTTGCCTAAACGCCGTAAAACCTAAAAGAGAATAGCCCGCTAATTTTAAAATTTGAGCCAATTTATCTCGGTTCCTGTCAAAGACATAAAAAACTTGTTAACTGAACAATTGTTCATCATAATATCACAAACGTTTTACCAGTTGACACATTTTCGATATCTCTTACAGTAACATAGATAAATTAGATAAGATCGATAAGGTCACCAAGAAGATCCTTCACACCAAAGTCAAGTCAAATATCCACAATGCACGAAAAACGGATTTCCAAAACCGTATCAATAGATAAATTAGGTCAAAGATGGAAGTGTGGGACACCTTCTTATAAGGTACCGTAGATCTACCAATCTCCGTTTTTGCTGGATCTCGAATATCCGACCTCGCGCCTTTTCTAACGAACTCTCATCACCCGAATTTCATTAAATCTTATAAATTTCCAGACAAATACTCC</canonical>
            <polymorphic>GTGTCCTTCAGAATTTCTTTTCCACTTCGTCGTCACCCAGAACGTTCTTCAGGACTGAGATGGTCAGAAGGACATGCAAAACAATTTTGTTTTGTCACATCTTCATGCTTCTCTTTCTTCTAACACTTGGTAGTGGTGGCGAAAAGCGATATGAAATATTCCATCTCAAATTCATAGATTCATTCATAGGTCGTCGTGGTCATGTCCGTCTGTCCGTCCGTCCCTTTTTCATCTTTCTCCTCTTCTCCTTCTTTCCACCGACACTTTATTCCTTCTTTTTCTTGGACCGCCTGTCACCAACTTTGATACTACGACTACTAGCTAGTAAGAATGCTATCCCACAACTCTTTGGGAGAAGGAAACAGAAAGTTGGAGTGACGACTAACTGGATTATTAGCCGTTTTTGATATATAGCCATTTTTCACCTGTTCCCCGAAATTTCGGCGTTTGAAAGTTTTTGAATTATTCAACCACCAATGGAGACGTCGAAGTGTTGTTTYTAAATTCTTACCAACATCACCCACAAACCACTTATAAGATTTATATAAAAGTTTGCCTAAACGCCGTAAAACCTAAAAGAGAATAGCCCGCTAATTTTAAAATTTGAGCCAATTTATCTCGGTTCCTGTCAAAGACATAAAAAACTTGTTAACTGAACAATTGTTCATCATAATATCACAAACGTTTTACCAGTTGACACATTTTCGATATCTCTTACAGTAACATAGATAAATTAGATAAGATCGATAAGGTCACCAAGAAGATCCTTCACACCAAAGTCAAGTCAAATATCCACAATGCACGAAAAACGGATTTCCAAAACCGTATCAATAGATAAATTAGGTCAAAGATGGAAGTGTGGGACACCTTCTTATAAGGTACCGTAGATCTACCAATCTCCGTTTTTGCTGGATCTCGAATATCCGACCTCGCGCCTTTTCTAACGAACTCTCATCACCCGAATTTCATTAAATCTTATAAATTTCCAGACAAATACTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGTTTGAAAGTTTTTGAAT</pcr_primer_p1>
		<pcr_primer_p2>CTATTGATACGGTTTTGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>391</pcr_amplicon_size>
		<canonical_amplicon>GCGTTTGAAAGTTTTTGAATTATTCAACCACCAATGGAGACGTCGAAGTGTTGTTTCTAAATTCTTACCAACATCACCCACAAACCACTTATAAGATTTATATAAAAGTTTGCCTAAACGCCGTAAAACCTAAAAGAGAATAGCCCGCTAATTTTAAAATTTGAGCCAATTTATCTCGGTTCCTGTCAAAGACATAAAAAACTTGTTAACTGAACAATTGTTCATCATAATATCACAAACGTTTTACCAGTTGACACATTTTCGATATCTCTTACAGTAACATAGATAAATTAGATAAGATCGATAAGGTCACCAAGAAGATCCTTCACACCAAAGTCAAGTCAAATATCCACAATGCACGAAAAACGGATTTCCAAAACCGTATCAATAG</canonical_amplicon>
		<polymorphic_amplicon>GCGTTTGAAAGTTTTTGAATTATTCAACCACCAATGGAGACGTCGAAGTGTTGTTTYTAAATTCTTACCAACATCACCCACAAACCACTTATAAGATTTATATAAAAGTTTGCCTAAACGCCGTAAAACCTAAAAGAGAATAGCCCGCTAATTTTAAAATTTGAGCCAATTTATCTCGGTTCCTGTCAAAGACATAAAAAACTTGTTAACTGAACAATTGTTCATCATAATATCACAAACGTTTTACCAGTTGACACATTTTCGATATCTCTTACAGTAACATAGATAAATTAGATAAGATCGATAAGGTCACCAAGAAGATCCTTCACACCAAAGTCAAGTCAAATATCCACAATGCACGAAAAACGGATTTCCAAAACCGTATCAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23441</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>69758</contig_pos>
        <strand></strand>
        <context>attagATAAG[A/G]tcgataaggt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTGACACATTTTCGATATCTCTTACAGTAACATAGATAAATTAGATAAG</left_flank>
        <right_flank>TCGATAAGGTCACCAAGAAGATCCTTCACACCAAAGTCAAGTCAAATATC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCCTTCTTTCCACCGACACTTTATTCCTTCTTTTTCTTGGACCGCCTGTCACCAACTTTGATACTACGACTACTAGCTAGTAAGAATGCTATCCCACAACTCTTTGGGAGAAGGAAACAGAAAGTTGGAGTGACGACTAACTGGATTATTAGCCGTTTTTGATATATAGCCATTTTTCACCTGTTCCCCGAAATTTCGGCGTTTGAAAGTTTTTGAATTATTCAACCACCAATGGAGACGTCGAAGTGTTGTTTCTAAATTCTTACCAACATCACCCACAAACCACTTATAAGATTTATATAAAAGTTTGCCTAAACGCCGTAAAACCTAAAAGAGAATAGCCCGCTAATTTTAAAATTTGAGCCAATTTATCTCGGTTCCTGTCAAAGACATAAAAAACTTGTTAACTGAACAATTGTTCATCATAATATCACAAACGTTTTACCAGTTGACACATTTTCGATATCTCTTACAGTAACATAGATAAATTAGATAAGATCGATAAGGTCACCAAGAAGATCCTTCACACCAAAGTCAAGTCAAATATCCACAATGCACGAAAAACGGATTTCCAAAACCGTATCAATAGATAAATTAGGTCAAAGATGGAAGTGTGGGACACCTTCTTATAAGGTACCGTAGATCTACCAATCTCCGTTTTTGCTGGATCTCGAATATCCGACCTCGCGCCTTTTCTAACGAACTCTCATCACCCGAATTTCATTAAATCTTATAAATTTCCAGACAAATACTCCAGACGGTCATGCTCGAGCGCCGATGAGCGTCGGCGTCTCACTTTTTCTCGTTCTCATAATTATGTGTCGTGACAGTCATCAGATGTGGTGTCTTGACGGTTCGGACTGTGAAACATCTGACACATGTTCTCTGTGCGAAGGAGCCGCCTGTCTCAGAGTGCAGAGGTAAGATTTTTGAACCGATAGTTCGTAGTTCTCCAGTTCTCTTGGTTCTTAATCGGAACGTCTTGTAAATGCTCTCAA</canonical>
            <polymorphic>TCTCCTTCTTTCCACCGACACTTTATTCCTTCTTTTTCTTGGACCGCCTGTCACCAACTTTGATACTACGACTACTAGCTAGTAAGAATGCTATCCCACAACTCTTTGGGAGAAGGAAACAGAAAGTTGGAGTGACGACTAACTGGATTATTAGCCGTTTTTGATATATAGCCATTTTTCACCTGTTCCCCGAAATTTCGGCGTTTGAAAGTTTTTGAATTATTCAACCACCAATGGAGACGTCGAAGTGTTGTTTCTAAATTCTTACCAACATCACCCACAAACCACTTATAAGATTTATATAAAAGTTTGCCTAAACGCCGTAAAACCTAAAAGAGAATAGCCCGCTAATTTTAAAATTTGAGCCAATTTATCTCGGTTCCTGTCAAAGACATAAAAAACTTGTTAACTGAACAATTGTTCATCATAATATCACAAACGTTTTACCAGTTGACACATTTTCGATATCTCTTACAGTAACATAGATAAATTAGATAAGRTCGATAAGGTCACCAAGAAGATCCTTCACACCAAAGTCAAGTCAAATATCCACAATGCACGAAAAACGGATTTCCAAAACCGTATCAATAGATAAATTAGGTCAAAGATGGAAGTGTGGGACACCTTCTTATAAGGTACCGTAGATCTACCAATCTCCGTTTTTGCTGGATCTCGAATATCCGACCTCGCGCCTTTTCTAACGAACTCTCATCACCCGAATTTCATTAAATCTTATAAATTTCCAGACAAATACTCCAGACGGTCATGCTCGAGCGCCGATGAGCGTCGGCGTCTCACTTTTTCTCGTTCTCATAATTATGTGTCGTGACAGTCATCAGATGTGGTGTCTTGACGGTTCGGACTGTGAAACATCTGACACATGTTCTCTGTGCGAAGGAGCCGCCTGTCTCAGAGTGCAGAGGTAAGATTTTTGAACCGATAGTTCGTAGTTCTCCAGTTCTCTTGGTTCTTAATCGGAACGTCTTGTAAATGCTCTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>498 332 124 25 21</canonical_bands>
                <polymorphic_bands>519 332 124 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGACGTCGAAGTGTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>CTATTGATACGGTTTTGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>355</pcr_amplicon_size>
		<canonical_amplicon>GAGACGTCGAAGTGTTGTTTCTAAATTCTTACCAACATCACCCACAAACCACTTATAAGATTTATATAAAAGTTTGCCTAAACGCCGTAAAACCTAAAAGAGAATAGCCCGCTAATTTTAAAATTTGAGCCAATTTATCTCGGTTCCTGTCAAAGACATAAAAAACTTGTTAACTGAACAATTGTTCATCATAATATCACAAACGTTTTACCAGTTGACACATTTTCGATATCTCTTACAGTAACATAGATAAATTAGATAAGATCGATAAGGTCACCAAGAAGATCCTTCACACCAAAGTCAAGTCAAATATCCACAATGCACGAAAAACGGATTTCCAAAACCGTATCAATAG</canonical_amplicon>
		<polymorphic_amplicon>GAGACGTCGAAGTGTTGTTTCTAAATTCTTACCAACATCACCCACAAACCACTTATAAGATTTATATAAAAGTTTGCCTAAACGCCGTAAAACCTAAAAGAGAATAGCCCGCTAATTTTAAAATTTGAGCCAATTTATCTCGGTTCCTGTCAAAGACATAAAAAACTTGTTAACTGAACAATTGTTCATCATAATATCACAAACGTTTTACCAGTTGACACATTTTCGATATCTCTTACAGTAACATAGATAAATTAGATAAGRTCGATAAGGTCACCAAGAAGATCCTTCACACCAAAGTCAAGTCAAATATCCACAATGCACGAAAAACGGATTTCCAAAACCGTATCAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23442</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>87327</contig_pos>
        <strand>+</strand>
        <context>TTAAGAAGTG[G/T]TGATTGTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATATTCCATTAGTTATTCCATCATCATCATCATTACAATTTAAGAAGTG</left_flank>
        <right_flank>TGATTGTTTATCCTAGTCAACCAATTTCAGAGAGGTTACAATAATTTGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATACAAAAGTGCACGAATACAGGGAATTCCATGTGACTAGACTTTTTGCGTCATCATTAACTGGAATGTGGATCGTCACATCGAACAGTTTCACGTGGAAGGGATGTCAGGTGATCCAGAACCTTCCGAGATAGAATATGGTCCGACCCGAGCATGATGATTCATCGGTCTGGAAGAGAGTGGTCGTGTTGGGAACCGAACTTAGCGGGGGCCATTTTCAAGTATTTGACAGACTAGTTAGATGAGCTCCGCAATGGATCCTAAAGGATAATTCAAAACGTTCCTTCTAACAGAATTCGTCATTTCTACCGAATCTAAGATCAAAGCTGGTCTCTTTGTAGGTTACGATAGTCGCTATCTTTCTTTGGGAAACAGTATGATCTAGGTCTTGGATCAGAACATTCCACCATCATCTGTTCGCTCGATACACATCAAGAAGAGCTCGTGACTATATTCCATTAGTTATTCCATCATCATCATCATTACAATTTAAGAAGTGTTGATTGTTTATCCTAGTCAACCAATTTCAGAGAGGTTACAATAATTTGTCGAAAAACATTCGAACAACAAAATTTTGTAGATCCAAATTGATGACATCATGGCTGGTACACAAACCCAGAACGTCATCCGAGTCACTCAGACCAGAACGAAAATTTTTGAGTTGAACCAATTCCATCGTCATTTTCATCTTCATCGTTTATCTTAGCTGTTTCATTTGGCCCAAGCCACACCAATCATCGAACATTTTTGTAGTACTCCATATCACGAGGGAGCGTCTTCGACTGGAACCGAAAACTGACACAGGAGAGACCGTTCCAAAGTGACCGATAAATAAAAAAAACCGTTTTGGTTCTTTCGATAAAGAACCTATCAACCGTTTTTCTGTCTTTTTCTTCTTTGTTCCCTTTTCTATGTCTCTTGCATTCTTGTTTCAATACATATCAACCAACTACCACACCCCAAATAATGAAGATGTGTCTGGTTTAGAGGGAAGGAAGAA</canonical>
            <polymorphic>ATACAAAAGTGCACGAATACAGGGAATTCCATGTGACTAGACTTTTTGCGTCATCATTAACTGGAATGTGGATCGTCACATCGAACAGTTTCACGTGGAAGGGATGTCAGGTGATCCAGAACCTTCCGAGATAGAATATGGTCCGACCCGAGCATGATGATTCATCGGTCTGGAAGAGAGTGGTCGTGTTGGGAACCGAACTTAGCGGGGGCCATTTTCAAGTATTTGACAGACTAGTTAGATGAGCTCCGCAATGGATCCTAAAGGATAATTCAAAACGTTCCTTCTAACAGAATTCGTCATTTCTACCGAATCTAAGATCAAAGCTGGTCTCTTTGTAGGTTACGATAGTCGCTATCTTTCTTTGGGAAACAGTATGATCTAGGTCTTGGATCAGAACATTCCACCATCATCTGTTCGCTCGATACACATCAAGAAGAGCTCGTGACTATATTCCATTAGTTATTCCATCATCATCATCATTACAATTTAAGAAGTGKTGATTGTTTATCCTAGTCAACCAATTTCAGAGAGGTTACAATAATTTGTCGAAAAACATTCGAACAACAAAATTTTGTAGATCCAAATTGATGACATCATGGCTGGTACACAAACCCAGAACGTCATCCGAGTCACTCAGACCAGAACGAAAATTTTTGAGTTGAACCAATTCCATCGTCATTTTCATCTTCATCGTTTATCTTAGCTGTTTCATTTGGCCCAAGCCACACCAATCATCGAACATTTTTGTAGTACTCCATATCACGAGGGAGCGTCTTCGACTGGAACCGAAAACTGACACAGGAGAGACCGTTCCAAAGTGACCGATAAATAAAAAAAACCGTTTTGGTTCTTTCGATAAAGAACCTATCAACCGTTTTTCTGTCTTTTTCTTCTTTGTTCCCTTTTCTATGTCTCTTGCATTCTTGTTTCAATACATATCAACCAACTACCACACCCCAAATAATGAAGATGTGTCTGGTTTAGAGGGAAGGAAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTACCGAATCTAAGATCAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTCGACAAATTATTGTAACCTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTCTACCGAATCTAAGATCAAAGCTGGTCTCTTTGTAGGTTACGATAGTCGCTATCTTTCTTTGGGAAACAGTATGATCTAGGTCTTGGATCAGAACATTCCACCATCATCTGTTCGCTCGATACACATCAAGAAGAGCTCGTGACTATATTCCATTAGTTATTCCATCATCATCATCATTACAATTTAAGAAGTGTTGATTGTTTATCCTAGTCAACCAATTTCAGAGAGGTTACAATAATTTGTCGAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTCTACCGAATCTAAGATCAAAGCTGGTCTCTTTGTAGGTTACGATAGTCGCTATCTTTCTTTGGGAAACAGTATGATCTAGGTCTTGGATCAGAACATTCCACCATCATCTGTTCGCTCGATACACATCAAGAAGAGCTCGTGACTATATTCCATTAGTTATTCCATCATCATCATCATTACAATTTAAGAAGTGKTGATTGTTTATCCTAGTCAACCAATTTCAGAGAGGTTACAATAATTTGTCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23443</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>88533</contig_pos>
        <strand>+</strand>
        <context>TCGACAAAAG[A/T]TTGAAGATTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATCACCCGGAACTAAATAACCAATTGAAGCTAATAAAACTCGACAAAAG</left_flank>
        <right_flank>TTGAAGATTGATTGGCAGGTGGAATCTTGAATTCAATCTACATTTTTTGA</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGACAAACTAGAAAAAAAAGAAGAAGAAAAAGTCAGGTAACAAGTGGATACAGAAAACAGGGGACTTGTAGTTTGTTGTCAACCCGTACAGTACTACACATCGGACAGACTATGACGTGAGACCCGATCAAAATGTGTTGATCGTGATTTGAGGAGAGATCGGAGAATCACCTAGTTTGGCTACGCTAGAGGATGTTGATGGGAAATCAGAAGAAACTTTTTGTAGAATTCGTGATTCAGAATGTTCGGGATTCAAAATTTGAAGATGACGAAAGGTTTGGGTCAAAACTAAACAAAAAACAAATATCTCAACTCGTAATCTAATTTCGCGAACTGCAGAATTTTCGACAAAAAATCAGAACCAAAACATTGGGAAAAAATGGGTATGTAATTATCAGACATACGTCATTCTTACAGTAATCCCATATCAAAAACGGTTTCACCTATCAATCACCCGGAACTAAATAACCAATTGAAGCTAATAAAACTCGACAAAAGTTTGAAGATTGATTGGCAGGTGGAATCTTGAATTCAATCTACATTTTTTGAAACTGATTTCAGACTTTTAAGCTCTCCGGAACTGAAAAAAAAACTTTTAAATTTTCAGGCTCTGCTTTGTGATTTGGTTTTGACTTGTAAGAATTCAGCAGATGGCGAACTCAAGAGTTAAACTGAAATGTTCCAAACGGGATTGAGAACTCCGAAATTTCGACCATCCTATGAATGAAATTTCGAACTGAATATTCCTGAAGCTTTTTTTCTGAATCAAATTCCGATCACAATATTTTCAAAAAATTTTCGGATTTAGAGGCTTTTGGAATACAGTGTGCCGAAGGCAAACTCTCACAATTTTTCTCGCTTTTGTGATGGGAAAGTGGGATTCCAAAATTTCGAAATTTTGATACTACGAGTTTCCGACATTTCGAACAATTCCGAAAAGGCCAAACCGAACATAACTGGATACAATTTCAAAGATCATCAGGACGTATAAATGAATTC</canonical>
            <polymorphic>AAGACAAACTAGAAAAAAAAGAAGAAGAAAAAGTCAGGTAACAAGTGGATACAGAAAACAGGGGACTTGTAGTTTGTTGTCAACCCGTACAGTACTACACATCGGACAGACTATGACGTGAGACCCGATCAAAATGTGTTGATCGTGATTTGAGGAGAGATCGGAGAATCACCTAGTTTGGCTACGCTAGAGGATGTTGATGGGAAATCAGAAGAAACTTTTTGTAGAATTCGTGATTCAGAATGTTCGGGATTCAAAATTTGAAGATGACGAAAGGTTTGGGTCAAAACTAAACAAAAAACAAATATCTCAACTCGTAATCTAATTTCGCGAACTGCAGAATTTTCGACAAAAAATCAGAACCAAAACATTGGGAAAAAATGGGTATGTAATTATCAGACATACGTCATTCTTACAGTAATCCCATATCAAAAACGGTTTCACCTATCAATCACCCGGAACTAAATAACCAATTGAAGCTAATAAAACTCGACAAAAGWTTGAAGATTGATTGGCAGGTGGAATCTTGAATTCAATCTACATTTTTTGAAACTGATTTCAGACTTTTAAGCTCTCCGGAACTGAAAAAAAAACTTTTAAATTTTCAGGCTCTGCTTTGTGATTTGGTTTTGACTTGTAAGAATTCAGCAGATGGCGAACTCAAGAGTTAAACTGAAATGTTCCAAACGGGATTGAGAACTCCGAAATTTCGACCATCCTATGAATGAAATTTCGAACTGAATATTCCTGAAGCTTTTTTTCTGAATCAAATTCCGATCACAATATTTTCAAAAAATTTTCGGATTTAGAGGCTTTTGGAATACAGTGTGCCGAAGGCAAACTCTCACAATTTTTCTCGCTTTTGTGATGGGAAAGTGGGATTCCAAAATTTCGAAATTTTGATACTACGAGTTTCCGACATTTCGAACAATTCCGAAAAGGCCAAACCGAACATAACTGGATACAATTTCAAAGATCATCAGGACGTATAAATGAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGACATACGTCATTCTTACAG</pcr_primer_p1>
		<pcr_primer_p2>TTCTTACAAGTCAAAACCAAATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCAGACATACGTCATTCTTACAGTAATCCCATATCAAAAACGGTTTCACCTATCAATCACCCGGAACTAAATAACCAATTGAAGCTAATAAAACTCGACAAAAGTTTGAAGATTGATTGGCAGGTGGAATCTTGAATTCAATCTACATTTTTTGAAACTGATTTCAGACTTTTAAGCTCTCCGGAACTGAAAAAAAAACTTTTAAATTTTCAGGCTCTGCTTTGTGATTTGGTTTTGACTTGTAAGAA</canonical_amplicon>
		<polymorphic_amplicon>TCAGACATACGTCATTCTTACAGTAATCCCATATCAAAAACGGTTTCACCTATCAATCACCCGGAACTAAATAACCAATTGAAGCTAATAAAACTCGACAAAAGWTTGAAGATTGATTGGCAGGTGGAATCTTGAATTCAATCTACATTTTTTGAAACTGATTTCAGACTTTTAAGCTCTCCGGAACTGAAAAAAAAACTTTTAAATTTTCAGGCTCTGCTTTGTGATTTGGTTTTGACTTGTAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23444</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>270844</contig_pos>
        <strand></strand>
        <context>AACTGTAAAA[G/T]GGCTAGTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATATTGTAAAGCTTCGAAAATTTTTCGGGTTCATTAGAAAACTGTAAAA</left_flank>
        <right_flank>GGCTAGTTGATAACAGACACCCGTAAATCTACGAAAGGGGCATGGGGGTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAATTCGGAAGAAATTCAATGAAAAATTACCAAAAAACGGCATCGCTAAAATACCGTCGAAAAACTACGCGGCGCCTTTGCGAAAAGGGGCGGATCGCTCCGCCCCCTTGTTTACTTGTTTGTTTGTGTGTTCACCGGTGCGATCTTTTTGAATTGACAATACAAAGGAATCCATGTCAGGCCTCTTAAAAACAATTGGATTTCACAAATTTTAACATCCATATTTCTTGTGAACGTCACAGTTACATACTCTGCGTGTAATAGGGGTAAACACAAACACGTAGAAAGAAAATCAGTATTCAGTTTTCCAACGTTCAAGTTCAGTTATCTTCTTGGTTTTTCGTATGCGCCAACTTCACGACTTCGAGGACAACTTCCAGAGCGGTTTCCAGTATGGGCAGGATTAAAAGCACAATGGCAGGAGTAGCTGAATTACATTAAAGGTGAGGATATTGTAAAGCTTCGAAAATTTTTCGGGTTCATTAGAAAACTGTAAAAGGGCTAGTTGATAACAGACACCCGTAAATCTACGAAAGGGGCATGGGGGTTTTTTATCAAATCACGTGACTATGTAGGATTTTTGAAAAATTAGCTGATTTTCATAGCCAAAATATTTTTTACATGACATTTCAAAAAAAAAAGGAAACGTAGATCTGCTGTCGTTCGTCGGAAGCAATATAGAGCGGATTCAAATTTATTCCCCTCCAAAGGAAAAAGGAAAATATGAAGATTTACCCCCCGAGCTTATATTACCCCTAAAACACCCAGCCCTCAAAAGTATTTTCAGCACTTTAATAGTATTCTTCGAATTTTTTTCCGGTGTTTGATACCCAGTTCTTCCCGAAGTATATTATCCTAAAATATAATTTCAATTCAGAAAAAAATCTTTAGTGCCAAGCACCGACATAAAATGGGGTAAGGCAAAAACGGGTTAAAATGTTGAAGATTCTAAACAGAAATAAGCTCAGCATCCTCAACCGGCGGAAACCTAAAAACAAA</canonical>
            <polymorphic>TCAATTCGGAAGAAATTCAATGAAAAATTACCAAAAAACGGCATCGCTAAAATACCGTCGAAAAACTACGCGGCGCCTTTGCGAAAAGGGGCGGATCGCTCCGCCCCCTTGTTTACTTGTTTGTTTGTGTGTTCACCGGTGCGATCTTTTTGAATTGACAATACAAAGGAATCCATGTCAGGCCTCTTAAAAACAATTGGATTTCACAAATTTTAACATCCATATTTCTTGTGAACGTCACAGTTACATACTCTGCGTGTAATAGGGGTAAACACAAACACGTAGAAAGAAAATCAGTATTCAGTTTTCCAACGTTCAAGTTCAGTTATCTTCTTGGTTTTTCGTATGCGCCAACTTCACGACTTCGAGGACAACTTCCAGAGCGGTTTCCAGTATGGGCAGGATTAAAAGCACAATGGCAGGAGTAGCTGAATTACATTAAAGGTGAGGATATTGTAAAGCTTCGAAAATTTTTCGGGTTCATTAGAAAACTGTAAAAKGGCTAGTTGATAACAGACACCCGTAAATCTACGAAAGGGGCATGGGGGTTTTTTATCAAATCACGTGACTATGTAGGATTTTTGAAAAATTAGCTGATTTTCATAGCCAAAATATTTTTTACATGACATTTCAAAAAAAAAAGGAAACGTAGATCTGCTGTCGTTCGTCGGAAGCAATATAGAGCGGATTCAAATTTATTCCCCTCCAAAGGAAAAAGGAAAATATGAAGATTTACCCCCCGAGCTTATATTACCCCTAAAACACCCAGCCCTCAAAAGTATTTTCAGCACTTTAATAGTATTCTTCGAATTTTTTTCCGGTGTTTGATACCCAGTTCTTCCCGAAGTATATTATCCTAAAATATAATTTCAATTCAGAAAAAAATCTTTAGTGCCAAGCACCGACATAAAATGGGGTAAGGCAAAAACGGGTTAAAATGTTGAAGATTCTAAACAGAAATAAGCTCAGCATCCTCAACCGGCGGAAACCTAAAAACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGTAAACACAAACACGTAGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAAAAATCCTACATAGTCAC</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>GGGTAAACACAAACACGTAGAAAGAAAATCAGTATTCAGTTTTCCAACGTTCAAGTTCAGTTATCTTCTTGGTTTTTCGTATGCGCCAACTTCACGACTTCGAGGACAACTTCCAGAGCGGTTTCCAGTATGGGCAGGATTAAAAGCACAATGGCAGGAGTAGCTGAATTACATTAAAGGTGAGGATATTGTAAAGCTTCGAAAATTTTTCGGGTTCATTAGAAAACTGTAAAAGGGCTAGTTGATAACAGACACCCGTAAATCTACGAAAGGGGCATGGGGGTTTTTTATCAAATCACGTGACTATGTAGGATTTTTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGGTAAACACAAACACGTAGAAAGAAAATCAGTATTCAGTTTTCCAACGTTCAAGTTCAGTTATCTTCTTGGTTTTTCGTATGCGCCAACTTCACGACTTCGAGGACAACTTCCAGAGCGGTTTCCAGTATGGGCAGGATTAAAAGCACAATGGCAGGAGTAGCTGAATTACATTAAAGGTGAGGATATTGTAAAGCTTCGAAAATTTTTCGGGTTCATTAGAAAACTGTAAAAKGGCTAGTTGATAACAGACACCCGTAAATCTACGAAAGGGGCATGGGGGTTTTTTATCAAATCACGTGACTATGTAGGATTTTTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23445</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>271167</contig_pos>
        <strand>+</strand>
        <context>TTTTTCCGGT[G/T]TTTGATACCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCAAAAGTATTTTCAGCACTTTAATAGTATTCTTCGAATTTTTTTCCGGT</left_flank>
        <right_flank>TTTGATACCCAGTTCTTCCCGAAGTATATTATCCTAAAATATAATTTCAA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTATCTTCTTGGTTTTTCGTATGCGCCAACTTCACGACTTCGAGGACAACTTCCAGAGCGGTTTCCAGTATGGGCAGGATTAAAAGCACAATGGCAGGAGTAGCTGAATTACATTAAAGGTGAGGATATTGTAAAGCTTCGAAAATTTTTCGGGTTCATTAGAAAACTGTAAAAGGGCTAGTTGATAACAGACACCCGTAAATCTACGAAAGGGGCATGGGGGTTTTTTATCAAATCACGTGACTATGTAGGATTTTTGAAAAATTAGCTGATTTTCATAGCCAAAATATTTTTTACATGACATTTCAAAAAAAAAAGGAAACGTAGATCTGCTGTCGTTCGTCGGAAGCAATATAGAGCGGATTCAAATTTATTCCCCTCCAAAGGAAAAAGGAAAATATGAAGATTTACCCCCCGAGCTTATATTACCCCTAAAACACCCAGCCCTCAAAAGTATTTTCAGCACTTTAATAGTATTCTTCGAATTTTTTTCCGGTGTTTGATACCCAGTTCTTCCCGAAGTATATTATCCTAAAATATAATTTCAATTCAGAAAAAAATCTTTAGTGCCAAGCACCGACATAAAATGGGGTAAGGCAAAAACGGGTTAAAATGTTGAAGATTCTAAACAGAAATAAGCTCAGCATCCTCAACCGGCGGAAACCTAAAAACAAAGAACCCTGAATGTGTAACAAACCCTTGATGCTAATTTGGAAATAATAAATTGAAAATCAAAATTGAAATTCAAAATTTTCAATGAAGATAAGCTAAACAATAAAAGCAAAACACAGAATTCCAAAAATACGTTTTCAGAAGGATGAAAAATCCCAAAAAATACCCTGAATACCTTTGAAGAAGAATATATTTCCTTTCTTCTGGTGATACTTTTGTATCACAAGTTTTTTAAAATTCAATTTTTTCACATTTTTGGCTGAAACATATGTTTCTATGTTCGGATGTTCGGAATGACTTTTTCGAAGTTTTTCGGAATGTCGAAA</canonical>
            <polymorphic>AGTTATCTTCTTGGTTTTTCGTATGCGCCAACTTCACGACTTCGAGGACAACTTCCAGAGCGGTTTCCAGTATGGGCAGGATTAAAAGCACAATGGCAGGAGTAGCTGAATTACATTAAAGGTGAGGATATTGTAAAGCTTCGAAAATTTTTCGGGTTCATTAGAAAACTGTAAAAGGGCTAGTTGATAACAGACACCCGTAAATCTACGAAAGGGGCATGGGGGTTTTTTATCAAATCACGTGACTATGTAGGATTTTTGAAAAATTAGCTGATTTTCATAGCCAAAATATTTTTTACATGACATTTCAAAAAAAAAAGGAAACGTAGATCTGCTGTCGTTCGTCGGAAGCAATATAGAGCGGATTCAAATTTATTCCCCTCCAAAGGAAAAAGGAAAATATGAAGATTTACCCCCCGAGCTTATATTACCCCTAAAACACCCAGCCCTCAAAAGTATTTTCAGCACTTTAATAGTATTCTTCGAATTTTTTTCCGGTKTTTGATACCCAGTTCTTCCCGAAGTATATTATCCTAAAATATAATTTCAATTCAGAAAAAAATCTTTAGTGCCAAGCACCGACATAAAATGGGGTAAGGCAAAAACGGGTTAAAATGTTGAAGATTCTAAACAGAAATAAGCTCAGCATCCTCAACCGGCGGAAACCTAAAAACAAAGAACCCTGAATGTGTAACAAACCCTTGATGCTAATTTGGAAATAATAAATTGAAAATCAAAATTGAAATTCAAAATTTTCAATGAAGATAAGCTAAACAATAAAAGCAAAACACAGAATTCCAAAAATACGTTTTCAGAAGGATGAAAAATCCCAAAAAATACCCTGAATACCTTTGAAGAAGAATATATTTCCTTTCTTCTGGTGATACTTTTGTATCACAAGTTTTTTAAAATTCAATTTTTTCACATTTTTGGCTGAAACATATGTTTCTATGTTCGGATGTTCGGAATGACTTTTTCGAAGTTTTTCGGAATGTCGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>197 113 99 93 76 72 71 54 44 36 34 33 27 26 14 7 4</canonical_bands>
                <polymorphic_bands>197 113 104 99 93 76 72 54 44 36 34 27 26 14 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTCAAAAGTATTTTCAGCACT</pcr_primer_p1>
		<pcr_primer_p2>TTGTTACACATTCAGGGTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTCAAAAGTATTTTCAGCACTTTAATAGTATTCTTCGAATTTTTTTCCGGTGTTTGATACCCAGTTCTTCCCGAAGTATATTATCCTAAAATATAATTTCAATTCAGAAAAAAATCTTTAGTGCCAAGCACCGACATAAAATGGGGTAAGGCAAAAACGGGTTAAAATGTTGAAGATTCTAAACAGAAATAAGCTCAGCATCCTCAACCGGCGGAAACCTAAAAACAAAGAACCCTGAATGTGTAACAA</canonical_amplicon>
		<polymorphic_amplicon>CCTCAAAAGTATTTTCAGCACTTTAATAGTATTCTTCGAATTTTTTTCCGGTKTTTGATACCCAGTTCTTCCCGAAGTATATTATCCTAAAATATAATTTCAATTCAGAAAAAAATCTTTAGTGCCAAGCACCGACATAAAATGGGGTAAGGCAAAAACGGGTTAAAATGTTGAAGATTCTAAACAGAAATAAGCTCAGCATCCTCAACCGGCGGAAACCTAAAAACAAAGAACCCTGAATGTGTAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23446</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>273553</contig_pos>
        <strand></strand>
        <context>GTATTCCTTT[A/C]TTTCTACGCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGTCGAAAATTAGTGAACTTGTTTTTTTTTGTGATTTTTGTATTCCTTT</left_flank>
        <right_flank>TTTCTACGCGCGTTTCTTCGGCGATGGTTTTTCGGAATATTGAAAGAGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGAGGCATCGGATTTTTGGAAGGGAGAAAAAAGTCCGAAAAATCGAAAAAAAACCCTCATGCCCCATTCCGTAGATTTTCGGGCGCGTGTTGATAACTAAATGGGGGCAAAGTCCAGAATTTATGAAAGTTGGAAAAATCAATATTCAGCTTTCAACTCTCATTTTGCAGGCCTGCTTGGTCTTACCAACTTCTAGGATATACCAACTTCTGAGACCTGGTAGGCTTCAAGAGCAGTGTTTAGGATTGGATGGATTCAATTTCGGATGTAGGGAGTAGATGAATCGTTTGAAAGGTGAATGGGATTTTTCTCGGGTTCGGACAATTCGTGTTTCTTAACTTTCATTTAAATTTTCTTTCTCCATTAGGAAAACAGAAGTTTTAGGAAAATTTGAAAAACTCTCGTTCAATTTCAGATTTCCGAACTTCAAACAAGCGATACCAGCATGATGTCGAAAATTAGTGAACTTGTTTTTTTTTGTGATTTTTGTATTCCTTTATTTCTACGCGCGTTTCTTCGGCGATGGTTTTTCGGAATATTGAAAGAGTTTCTTCTCGTCGGCGTTCTCGTTCTCGTTCTTTCGGCTTCCTTGTTGCTCTGGTTTTGTGGTGGTCGTTCCGGTTGTACCTTGAATTCGCTGTCTAATCATTCTCGGTCTTAAATCGATGGTCTTAAAACATTTTCTGGCGGTTCTTGGCATAAAAAATTCCTGGGTGAACTTTCACAGAAGTCTGAAGAAATATAAATTTAATTAAACAATATAAATAACTATTGGATCTGTAAAAAACATAAAAATTGAAAACACATAAAAATGTAAATGCTGAATTTTCGTGTTGTACACTTGATACATTTCCTCAATAAATGACGTCTTCTAGAATTGTTGGTTTATCGTTTTCATATGATTTAGAGACTCATACTTTCAAACAAAAATTAGGTGGAAAAAAATTTTAAAAAAACTTTTGTTTGAAGAAATATGTAAATTAGTAAAGATGAATCAAA</canonical>
            <polymorphic>TCGAGGCATCGGATTTTTGGAAGGGAGAAAAAAGTCCGAAAAATCGAAAAAAAACCCTCATGCCCCATTCCGTAGATTTTCGGGCGCGTGTTGATAACTAAATGGGGGCAAAGTCCAGAATTTATGAAAGTTGGAAAAATCAATATTCAGCTTTCAACTCTCATTTTGCAGGCCTGCTTGGTCTTACCAACTTCTAGGATATACCAACTTCTGAGACCTGGTAGGCTTCAAGAGCAGTGTTTAGGATTGGATGGATTCAATTTCGGATGTAGGGAGTAGATGAATCGTTTGAAAGGTGAATGGGATTTTTCTCGGGTTCGGACAATTCGTGTTTCTTAACTTTCATTTAAATTTTCTTTCTCCATTAGGAAAACAGAAGTTTTAGGAAAATTTGAAAAACTCTCGTTCAATTTCAGATTTCCGAACTTCAAACAAGCGATACCAGCATGATGTCGAAAATTAGTGAACTTGTTTTTTTTTGTGATTTTTGTATTCCTTTMTTTCTACGCGCGTTTCTTCGGCGATGGTTTTTCGGAATATTGAAAGAGTTTCTTCTCGTCGGCGTTCTCGTTCTCGTTCTTTCGGCTTCCTTGTTGCTCTGGTTTTGTGGTGGTCGTTCCGGTTGTACCTTGAATTCGCTGTCTAATCATTCTCGGTCTTAAATCGATGGTCTTAAAACATTTTCTGGCGGTTCTTGGCATAAAAAATTCCTGGGTGAACTTTCACAGAAGTCTGAAGAAATATAAATTTAATTAAACAATATAAATAACTATTGGATCTGTAAAAAACATAAAAATTGAAAACACATAAAAATGTAAATGCTGAATTTTCGTGTTGTACACTTGATACATTTCCTCAATAAATGACGTCTTCTAGAATTGTTGGTTTATCGTTTTCATATGATTTAGAGACTCATACTTTCAAACAAAAATTAGGTGGAAAAAAATTTTAAAAAAACTTTTGTTTGAAGAAATATGTAAATTAGTAAAGATGAATCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTCTCGTTCAATTTCAGATTT</pcr_primer_p1>
		<pcr_primer_p2>ATTAGACAGCGAATTCAAGGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACTCTCGTTCAATTTCAGATTTCCGAACTTCAAACAAGCGATACCAGCATGATGTCGAAAATTAGTGAACTTGTTTTTTTTTGTGATTTTTGTATTCCTTTATTTCTACGCGCGTTTCTTCGGCGATGGTTTTTCGGAATATTGAAAGAGTTTCTTCTCGTCGGCGTTCTCGTTCTCGTTCTTTCGGCTTCCTTGTTGCTCTGGTTTTGTGGTGGTCGTTCCGGTTGTACCTTGAATTCGCTGTCTAAT</canonical_amplicon>
		<polymorphic_amplicon>AACTCTCGTTCAATTTCAGATTTCCGAACTTCAAACAAGCGATACCAGCATGATGTCGAAAATTAGTGAACTTGTTTTTTTTTGTGATTTTTGTATTCCTTTMTTTCTACGCGCGTTTCTTCGGCGATGGTTTTTCGGAATATTGAAAGAGTTTCTTCTCGTCGGCGTTCTCGTTCTCGTTCTTTCGGCTTCCTTGTTGCTCTGGTTTTGTGGTGGTCGTTCCGGTTGTACCTTGAATTCGCTGTCTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23447</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>302665</contig_pos>
        <strand>+</strand>
        <context>CGGCATCATC[A/G]TCACCCACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAGAATGGCGGAAGGGGGAGAGTCGTCCGTCCAAATTAGCGGCATCATC</left_flank>
        <right_flank>TCACCCACAACATTCCGCGAATTATTTCTTTCAATTACTCCTTCGTTTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAAAGAAGTCTACAATTTAGAGCCGTTCTCTAATAGACTGACGATGTTCCAAGGAATACATATAAAATTCCATAACTACAAAACTACCGTAATCCTTGTTTTTCAAAATACATTTATCAGTGCTGATTCACAAAACAAAGATTAGTTGCTTTTCGTTTTCTTTTTACTTTTGGTGTATATCGCTTTTCGTCGGACCTACGTCTTTGCATATATTTTGAAAGGTTTCTTTTCTTAATCCCAACAATCGCAACCATTCAGCTCGACACTCCTAGAATTTTCTTCCGCTCCCACACACGATTCATGTTATCATTTCTTATCTAAACGTCAGTCATTCTAGTGTATTCGTACTACAAAAGGACCATATGTGTAGATTTGTTAATCCGATAAGACAAGGTGCTAGCGGAAACAACAGACGATTTTTGAACACATGGTCAAATCGGTTTGAGGAGAGAATGGCGGAAGGGGGAGAGTCGTCCGTCCAAATTAGCGGCATCATCATCACCCACAACATTCCGCGAATTATTTCTTTCAATTACTCCTTCGTTTTTCTATTCCCATTCCATCTGAATTCACCCCCACCCACCAATCGATTGCCAACGGAACTGTCACTTTGGATGAGACTCACCCCTTTTTAAAATACGATACTATTTGGGAATGTCTATACAGAAGACCCCTTTTTTGGAAGAGATGCTTCAACCATTTTTCATGATTCTACAATAAGGATGAGAATAGAAAATAAGGGCGAACGAAGACGAGTTGGAAGACCATAAAAATCCACTTCATCCCAGATTTAATGGTTCTTCTTTTTTCTTCTTTCGTTTCTTTTCTTCCCCATCTCCACCCTAATGACTTTCAACTATGTATTTTTATTCGCGCGCTCCCTGCTTCTCTAATCTCTCTTTGGCTCATTAACTCTCTTTGTTTATTGCGAGGACATTTGAATTTTATGAGAAACAGAAAAGAGTCTCTTCTTTTTTCCTCATATTCCATCCTTCTTA</canonical>
            <polymorphic>TCTAAAGAAGTCTACAATTTAGAGCCGTTCTCTAATAGACTGACGATGTTCCAAGGAATACATATAAAATTCCATAACTACAAAACTACCGTAATCCTTGTTTTTCAAAATACATTTATCAGTGCTGATTCACAAAACAAAGATTAGTTGCTTTTCGTTTTCTTTTTACTTTTGGTGTATATCGCTTTTCGTCGGACCTACGTCTTTGCATATATTTTGAAAGGTTTCTTTTCTTAATCCCAACAATCGCAACCATTCAGCTCGACACTCCTAGAATTTTCTTCCGCTCCCACACACGATTCATGTTATCATTTCTTATCTAAACGTCAGTCATTCTAGTGTATTCGTACTACAAAAGGACCATATGTGTAGATTTGTTAATCCGATAAGACAAGGTGCTAGCGGAAACAACAGACGATTTTTGAACACATGGTCAAATCGGTTTGAGGAGAGAATGGCGGAAGGGGGAGAGTCGTCCGTCCAAATTAGCGGCATCATCRTCACCCACAACATTCCGCGAATTATTTCTTTCAATTACTCCTTCGTTTTTCTATTCCCATTCCATCTGAATTCACCCCCACCCACCAATCGATTGCCAACGGAACTGTCACTTTGGATGAGACTCACCCCTTTTTAAAATACGATACTATTTGGGAATGTCTATACAGAAGACCCCTTTTTTGGAAGAGATGCTTCAACCATTTTTCATGATTCTACAATAAGGATGAGAATAGAAAATAAGGGCGAACGAAGACGAGTTGGAAGACCATAAAAATCCACTTCATCCCAGATTTAATGGTTCTTCTTTTTTCTTCTTTCGTTTCTTTTCTTCCCCATCTCCACCCTAATGACTTTCAACTATGTATTTTTATTCGCGCGCTCCCTGCTTCTCTAATCTCTCTTTGGCTCATTAACTCTCTTTGTTTATTGCGAGGACATTTGAATTTTATGAGAAACAGAAAAGAGTCTCTTCTTTTTTCCTCATATTCCATCCTTCTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTCTTATCTAAACGTCAGTCA</pcr_primer_p1>
		<pcr_primer_p2>GGAATAGAAAAACGAAGGAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CATTTCTTATCTAAACGTCAGTCATTCTAGTGTATTCGTACTACAAAAGGACCATATGTGTAGATTTGTTAATCCGATAAGACAAGGTGCTAGCGGAAACAACAGACGATTTTTGAACACATGGTCAAATCGGTTTGAGGAGAGAATGGCGGAAGGGGGAGAGTCGTCCGTCCAAATTAGCGGCATCATCATCACCCACAACATTCCGCGAATTATTTCTTTCAATTACTCCTTCGTTTTTCTATTCC</canonical_amplicon>
		<polymorphic_amplicon>CATTTCTTATCTAAACGTCAGTCATTCTAGTGTATTCGTACTACAAAAGGACCATATGTGTAGATTTGTTAATCCGATAAGACAAGGTGCTAGCGGAAACAACAGACGATTTTTGAACACATGGTCAAATCGGTTTGAGGAGAGAATGGCGGAAGGGGGAGAGTCGTCCGTCCAAATTAGCGGCATCATCRTCACCCACAACATTCCGCGAATTATTTCTTTCAATTACTCCTTCGTTTTTCTATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23448</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>373336</contig_pos>
        <strand></strand>
        <context>TTCAATAGAA[C/A]TACGTCACTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GCTGATTAGATCTTGACTAGAGTTAGCACTGTAAAAGGTGTTCAATAGAA</left_flank>
        <right_flank>TACGTCACTCTTAGTTTCATTGAGTTGCTGTCCGATAATTAAAGATTCAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAGTTGGGTCCAGTACAACCGAATCGTCGACTGTTCCGTCTACTTCTACTACTGAAATACCGTCGTCGAGCACAACAGAAAAACCATCCACTTCAACATCTGAGTCTCCATCATCTACTACAACCCAAGAACCATCCACATCAACATCGGTGCCTCCGTCGTCTTCAACCACAGCAGAACCATCCAGTTCTACTACTGCAGTACCGTCATCAAGCACAACGACAGAACCATCCACCTCTACTACTGAGGCACCAACATCAACATCAACTCAGGCTCCATCCACATCGACAACAATTCAGTCAACAACAACTGGAGGATGTCTCAGTACAGTTTGTGGAAGTGGCTGGTTCAAGACTCAACGTGGAGGAAAAACTCTTTGTATGAGAGTAAGTTGTTTATCTGGCTCTCGTCTTACATAAAAGTTTAAAAAGATATGGAAGCTGTGTGGCTGATTAGATCTTGACTAGAGTTAGCACTGTAAAAGGTGTTCAATAGAACTACGTCACTCTTAGTTTCATTGAGTTGCTGTCCGATAATTAAAGATTCAAATAGAGAAACTATGAACTTTTAAAAGCCAAACAACAAACAACTGATCATTAATTCTGCCTATAACAATATCAAATCATTTGTTTGGAGGTTAGTAAAAAGTCCCGATTTTATCGAGTTTAAAAGAATGAAAAATATGGCTAAAAATATGGAATTCGTGTGACTTTTCTTCAGCAAATCAACAACCGATCGTCCTACGTAATTAATCTTCTTTGAATTTCAGCTCTTCTACCATGACACTTCGAGTTATCATGATGGAGCATTCTTCTGCTACGACAATTATCAAGCCTTCCTGACCGGACCTGATAGCAATCCCGAATACGACGAGATTATGAGTCAAGCACGATCAAACTCAGATGTTGTTGGCAACATGACATCTTACAACAGAGCCATGATTCTGATCGGATTGAAACGAACACTACAATGTACCAGCGATAATGGAGCTCAAACTC</canonical>
            <polymorphic>AACAGTTGGGTCCAGTACAACCGAATCGTCGACTGTTCCGTCTACTTCTACTACTGAAATACCGTCGTCGAGCACAACAGAAAAACCATCCACTTCAACATCTGAGTCTCCATCATCTACTACAACCCAAGAACCATCCACATCAACATCGGTGCCTCCGTCGTCTTCAACCACAGCAGAACCATCCAGTTCTACTACTGCAGTACCGTCATCAAGCACAACGACAGAACCATCCACCTCTACTACTGAGGCACCAACATCAACATCAACTCAGGCTCCATCCACATCGACAACAATTCAGTCAACAACAACTGGAGGATGTCTCAGTACAGTTTGTGGAAGTGGCTGGTTCAAGACTCAACGTGGAGGAAAAACTCTTTGTATGAGAGTAAGTTGTTTATCTGGCTCTCGTCTTACATAAAAGTTTAAAAAGATATGGAAGCTGTGTGGCTGATTAGATCTTGACTAGAGTTAGCACTGTAAAAGGTGTTCAATAGAAMTACGTCACTCTTAGTTTCATTGAGTTGCTGTCCGATAATTAAAGATTCAAATAGAGAAACTATGAACTTTTAAAAGCCAAACAACAAACAACTGATCATTAATTCTGCCTATAACAATATCAAATCATTTGTTTGGAGGTTAGTAAAAAGTCCCGATTTTATCGAGTTTAAAAGAATGAAAAATATGGCTAAAAATATGGAATTCGTGTGACTTTTCTTCAGCAAATCAACAACCGATCGTCCTACGTAATTAATCTTCTTTGAATTTCAGCTCTTCTACCATGACACTTCGAGTTATCATGATGGAGCATTCTTCTGCTACGACAATTATCAAGCCTTCCTGACCGGACCTGATAGCAATCCCGAATACGACGAGATTATGAGTCAAGCACGATCAAACTCAGATGTTGTTGGCAACATGACATCTTACAACAGAGCCATGATTCTGATCGGATTGAAACGAACACTACAATGTACCAGCGATAATGGAGCTCAAACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCTCTCGTCTTACATAAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>GGACTTTTTACTAACCTCCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGCTCTCGTCTTACATAAAAGTTTAAAAAGATATGGAAGCTGTGTGGCTGATTAGATCTTGACTAGAGTTAGCACTGTAAAAGGTGTTCAATAGAACTACGTCACTCTTAGTTTCATTGAGTTGCTGTCCGATAATTAAAGATTCAAATAGAGAAACTATGAACTTTTAAAAGCCAAACAACAAACAACTGATCATTAATTCTGCCTATAACAATATCAAATCATTTGTTTGGAGGTTAGTAAAAAGTCC</canonical_amplicon>
		<polymorphic_amplicon>GGCTCTCGTCTTACATAAAAGTTTAAAAAGATATGGAAGCTGTGTGGCTGATTAGATCTTGACTAGAGTTAGCACTGTAAAAGGTGTTCAATAGAAMTACGTCACTCTTAGTTTCATTGAGTTGCTGTCCGATAATTAAAGATTCAAATAGAGAAACTATGAACTTTTAAAAGCCAAACAACAAACAACTGATCATTAATTCTGCCTATAACAATATCAAATCATTTGTTTGGAGGTTAGTAAAAAGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23449</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>437931</contig_pos>
        <strand>+</strand>
        <context>CTACCTTTTG[G/T]TTTTTCCCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACAGATTTTCTGCCAATTGGACGCCAAAAACTGTATTTACTACCTTTTG</left_flank>
        <right_flank>TTTTTCCCTGACTAAGAGAAATTAATAGAACCATGAGAATGTTTTTAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTCATCTCCGGTTGACAAACAAAAAGAGGCTCACATATTAGGGCTAAAGTTTCTCTCTTCCTCCTTTCCTCCGATCTGAGATATATAGAGCTCTGACCCCGTCGTCGTCACAAATCAAATAAATCTCAACTCATCAAGTGCACCGGCTACTTCTCAAAAAGGGGAACAAAAAAGGCCGCAAGCTGACCGTCGTTTCCCCCTTTTCCCCCAAAAACATCTCTCTATGTCCACAAACTACTGGACATTGAGAGAACGAGAGCTTCTCCTCTTCCGAGAAGAAGCATATAGCACATCCGATCGAAATGGACACCACTGTCTTCTCTTGGGGAATGTTCCTTGATGAATGCCCCCTTCCGCCAACACATTGTTCAGGTGTGAATGAATGAATAAGTCGGTGCTATACTAGCTTAGTTTTGCTCTATTCCCTGTCCCCATTCTCGCGATTGTCAACAGATTTTCTGCCAATTGGACGCCAAAAACTGTATTTACTACCTTTTGTTTTTTCCCTGACTAAGAGAAATTAATAGAACCATGAGAATGTTTTTAAACAACAGGAAACTACCTTTTTTTCAAATAATTACTTTCTTGGGAAGTCAGAAAAGTTATTTCTGGCCGTTCCGTTCTTCTATTCCAAAAACCTTTCTAGGTTATCATCTTTCTCTTTTTGTCTAAATAACGACCTTCGCTCGGAAGTGTCAACAGTAATTGAATGGTCCGTCCCCTCTTACCTATATCTCAACCTATACGCCATATTTGAACAGTACCTTTGGTCCCGGTGTGGTTCTAGTTCTTTGTGTGCTTATTGGATTAACCTGTAGCTCTCTTACCGAGCTATCTTATGATTGAAAACAGAAAACCCGTGGAGCTATCTATGCTCTTTTTTGGTTCTGCTTCCAGTTGCAACAACTTTAAATGTGCTCGTATTTCATCGAACTTTGGCTCGTTAAGAGCAAAACGACGTCGTCGCCTGGTCTTTCCAGGGTCCCACACCAAAACCAA</canonical>
            <polymorphic>GGTCATCTCCGGTTGACAAACAAAAAGAGGCTCACATATTAGGGCTAAAGTTTCTCTCTTCCTCCTTTCCTCCGATCTGAGATATATAGAGCTCTGACCCCGTCGTCGTCACAAATCAAATAAATCTCAACTCATCAAGTGCACCGGCTACTTCTCAAAAAGGGGAACAAAAAAGGCCGCAAGCTGACCGTCGTTTCCCCCTTTTCCCCCAAAAACATCTCTCTATGTCCACAAACTACTGGACATTGAGAGAACGAGAGCTTCTCCTCTTCCGAGAAGAAGCATATAGCACATCCGATCGAAATGGACACCACTGTCTTCTCTTGGGGAATGTTCCTTGATGAATGCCCCCTTCCGCCAACACATTGTTCAGGTGTGAATGAATGAATAAGTCGGTGCTATACTAGCTTAGTTTTGCTCTATTCCCTGTCCCCATTCTCGCGATTGTCAACAGATTTTCTGCCAATTGGACGCCAAAAACTGTATTTACTACCTTTTGKTTTTTCCCTGACTAAGAGAAATTAATAGAACCATGAGAATGTTTTTAAACAACAGGAAACTACCTTTTTTTCAAATAATTACTTTCTTGGGAAGTCAGAAAAGTTATTTCTGGCCGTTCCGTTCTTCTATTCCAAAAACCTTTCTAGGTTATCATCTTTCTCTTTTTGTCTAAATAACGACCTTCGCTCGGAAGTGTCAACAGTAATTGAATGGTCCGTCCCCTCTTACCTATATCTCAACCTATACGCCATATTTGAACAGTACCTTTGGTCCCGGTGTGGTTCTAGTTCTTTGTGTGCTTATTGGATTAACCTGTAGCTCTCTTACCGAGCTATCTTATGATTGAAAACAGAAAACCCGTGGAGCTATCTATGCTCTTTTTTGGTTCTGCTTCCAGTTGCAACAACTTTAAATGTGCTCGTATTTCATCGAACTTTGGCTCGTTAAGAGCAAAACGACGTCGTCGCCTGGTCTTTCCAGGGTCCCACACCAAAACCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTAGTTTTGCTCTATTCCCTGT</pcr_primer_p1>
		<pcr_primer_p2>GATGATAACCTAGAAAGGTTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTAGTTTTGCTCTATTCCCTGTCCCCATTCTCGCGATTGTCAACAGATTTTCTGCCAATTGGACGCCAAAAACTGTATTTACTACCTTTTGTTTTTTCCCTGACTAAGAGAAATTAATAGAACCATGAGAATGTTTTTAAACAACAGGAAACTACCTTTTTTTCAAATAATTACTTTCTTGGGAAGTCAGAAAAGTTATTTCTGGCCGTTCCGTTCTTCTATTCCAAAAACCTTTCTAGGTTATCATC</canonical_amplicon>
		<polymorphic_amplicon>CTTAGTTTTGCTCTATTCCCTGTCCCCATTCTCGCGATTGTCAACAGATTTTCTGCCAATTGGACGCCAAAAACTGTATTTACTACCTTTTGKTTTTTCCCTGACTAAGAGAAATTAATAGAACCATGAGAATGTTTTTAAACAACAGGAAACTACCTTTTTTTCAAATAATTACTTTCTTGGGAAGTCAGAAAAGTTATTTCTGGCCGTTCCGTTCTTCTATTCCAAAAACCTTTCTAGGTTATCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23450</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>448449</contig_pos>
        <strand>+</strand>
        <context>CACATCTGAA[A/C]TATTTAGTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTATCGATCGAACGCTAATGCAGTAAGGATGAATGTCGAGCACATCTGAA</left_flank>
        <right_flank>TATTTAGTTATTGAGCTCATAAATGTCGCGGACAGCCGATGGGGAAGAAT</right_flank>
        <qual_score>149</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAAAAAAAGTACCTTCTTTGTCTTCTTAGACGAAGCACGATTTTGGCATAAAAGTAGGTGAGAAGAGTGCATGGCAAAAGGAATGCAAAGAAGATAAGGAAGGCCGAAACCCAAAGCTTCCATTCACGAGTCATCCCGTCAGTGCACATTTGGCGGATCACCTCGTGCCGTTCCTGGAAATGAAGTGAATTTTAAAGAAATGAAAGAAGCGTAAGAGGAAAAGAAGGAGATTGTTTTTTTGCATCTGCAAATGACTCCTCCACATCCAATGCATTCACTTACATTCTTTGTGCTAACGTAGTATCCCATCCTATTGAAACTTGTGACTCGTGCCGATAAAACGACCGGAGAGATGAGACAAAATGACAATGTTGCAAGAATTGTCGTAATGTAAATTGTATGACGCATCTCGTGGATTCGCTTGATTTCCGGATGACAAATTGCCATGTATCGATCGAACGCTAATGCAGTAAGGATGAATGTCGAGCACATCTGAACTATTTAGTTATTGAGCTCATAAATGTCGCGGACAGCCGATGGGGAAGAATTTTTACCGGCCCGGCCCTTCTCTTTGGAGGGAAAATTTAGACGGAATCATTTTTGACAGAAATCTGGATTTTTGTGGTTATTGTACAAGAATTTATTTGTAATGGATTGAGAGCCTTTAAGAAGGAAACTGGGCTCCGAAACTTCAATATAATCATTTTAACAAAAATTTATCCATCATCCGGGTCGGTGCGTCAGGCCGGAATTTAGCACGTATGATTGAGCTAAACTGAAAAAAGGGTCGAATAAAACCGGCTATCTAGGTTGATCTCAAAAGTTTCTCAATCATTCTGTATATATTTATGCACGTTTCAGAATCAGAAATCGCTACAAATATTTGACAAGCCGTAGAAAGAGCGGAGGTCGAAATTATTAGACATTCACAAGGACGTCTTTACTAGAAACCTCTGGACCCGAGTTCCGTTTTCTTTACATAAGCTTTCAAGGGAATG</canonical>
            <polymorphic>CCAAAAAAAAGTACCTTCTTTGTCTTCTTAGACGAAGCACGATTTTGGCATAAAAGTAGGTGAGAAGAGTGCATGGCAAAAGGAATGCAAAGAAGATAAGGAAGGCCGAAACCCAAAGCTTCCATTCACGAGTCATCCCGTCAGTGCACATTTGGCGGATCACCTCGTGCCGTTCCTGGAAATGAAGTGAATTTTAAAGAAATGAAAGAAGCGTAAGAGGAAAAGAAGGAGATTGTTTTTTTGCATCTGCAAATGACTCCTCCACATCCAATGCATTCACTTACATTCTTTGTGCTAACGTAGTATCCCATCCTATTGAAACTTGTGACTCGTGCCGATAAAACGACCGGAGAGATGAGACAAAATGACAATGTTGCAAGAATTGTCGTAATGTAAATTGTATGACGCATCTCGTGGATTCGCTTGATTTCCGGATGACAAATTGCCATGTATCGATCGAACGCTAATGCAGTAAGGATGAATGTCGAGCACATCTGAAMTATTTAGTTATTGAGCTCATAAATGTCGCGGACAGCCGATGGGGAAGAATTTTTACCGGCCCGGCCCTTCTCTTTGGAGGGAAAATTTAGACGGAATCATTTTTGACAGAAATCTGGATTTTTGTGGTTATTGTACAAGAATTTATTTGTAATGGATTGAGAGCCTTTAAGAAGGAAACTGGGCTCCGAAACTTCAATATAATCATTTTAACAAAAATTTATCCATCATCCGGGTCGGTGCGTCAGGCCGGAATTTAGCACGTATGATTGAGCTAAACTGAAAAAAGGGTCGAATAAAACCGGCTATCTAGGTTGATCTCAAAAGTTTCTCAATCATTCTGTATATATTTATGCACGTTTCAGAATCAGAAATCGCTACAAATATTTGACAAGCCGTAGAAAGAGCGGAGGTCGAAATTATTAGACATTCACAAGGACGTCTTTACTAGAAACCTCTGGACCCGAGTTCCGTTTTCTTTACATAAGCTTTCAAGGGAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATCGATCGAACGCTAATG</pcr_primer_p1>
		<pcr_primer_p2>TAGCTCAATCATACGTGCTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>326</pcr_amplicon_size>
		<canonical_amplicon>GTATCGATCGAACGCTAATGCAGTAAGGATGAATGTCGAGCACATCTGAACTATTTAGTTATTGAGCTCATAAATGTCGCGGACAGCCGATGGGGAAGAATTTTTACCGGCCCGGCCCTTCTCTTTGGAGGGAAAATTTAGACGGAATCATTTTTGACAGAAATCTGGATTTTTGTGGTTATTGTACAAGAATTTATTTGTAATGGATTGAGAGCCTTTAAGAAGGAAACTGGGCTCCGAAACTTCAATATAATCATTTTAACAAAAATTTATCCATCATCCGGGTCGGTGCGTCAGGCCGGAATTTAGCACGTATGATTGAGCTA</canonical_amplicon>
		<polymorphic_amplicon>GTATCGATCGAACGCTAATGCAGTAAGGATGAATGTCGAGCACATCTGAAMTATTTAGTTATTGAGCTCATAAATGTCGCGGACAGCCGATGGGGAAGAATTTTTACCGGCCCGGCCCTTCTCTTTGGAGGGAAAATTTAGACGGAATCATTTTTGACAGAAATCTGGATTTTTGTGGTTATTGTACAAGAATTTATTTGTAATGGATTGAGAGCCTTTAAGAAGGAAACTGGGCTCCGAAACTTCAATATAATCATTTTAACAAAAATTTATCCATCATCCGGGTCGGTGCGTCAGGCCGGAATTTAGCACGTATGATTGAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23451</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>448761</contig_pos>
        <strand></strand>
        <context>GGCTATCTAG[G/A]TTGATCTCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTATGATTGAGCTAAACTGAAAAAAGGGTCGAATAAAACCGGCTATCTAG</left_flank>
        <right_flank>TTGATCTCAAAAGTTTCTCAATCATTCTGTATATATTTATGCACGTTTCA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATTGAAACTTGTGACTCGTGCCGATAAAACGACCGGAGAGATGAGACAAAATGACAATGTTGCAAGAATTGTCGTAATGTAAATTGTATGACGCATCTCGTGGATTCGCTTGATTTCCGGATGACAAATTGCCATGTATCGATCGAACGCTAATGCAGTAAGGATGAATGTCGAGCACATCTGAACTATTTAGTTATTGAGCTCATAAATGTCGCGGACAGCCGATGGGGAAGAATTTTTACCGGCCCGGCCCTTCTCTTTGGAGGGAAAATTTAGACGGAATCATTTTTGACAGAAATCTGGATTTTTGTGGTTATTGTACAAGAATTTATTTGTAATGGATTGAGAGCCTTTAAGAAGGAAACTGGGCTCCGAAACTTCAATATAATCATTTTAACAAAAATTTATCCATCATCCGGGTCGGTGCGTCAGGCCGGAATTTAGCACGTATGATTGAGCTAAACTGAAAAAAGGGTCGAATAAAACCGGCTATCTAGGTTGATCTCAAAAGTTTCTCAATCATTCTGTATATATTTATGCACGTTTCAGAATCAGAAATCGCTACAAATATTTGACAAGCCGTAGAAAGAGCGGAGGTCGAAATTATTAGACATTCACAAGGACGTCTTTACTAGAAACCTCTGGACCCGAGTTCCGTTTTCTTTACATAAGCTTTCAAGGGAATGAGTATCTGAAAACTATGATCCTAAGTCATTCTGAGCATTTATAGAAGCCTCAGTCTGTTTGGATGTTTTTCGATCGTTCCCCTTTTCTTTGCTCAGTTCCAAATTGAATTAGTTCATCAGCAAAGAAAAAATAGAAGGTTCCGAGTATTGCAATCATCCCAAGGGCCTTCAGACATTTTCGAAATCGCCAGAGACAAGAAAAGTGACGAGAGGAAAAAAAGATTGGCTGATTCAATTGTCAAGACAATCCGTGTCCCTTTCTTCTATTTCTGTGTGAATGCATGGATGTGACGACGTCGTTGTACTCGCGAA</canonical>
            <polymorphic>CTATTGAAACTTGTGACTCGTGCCGATAAAACGACCGGAGAGATGAGACAAAATGACAATGTTGCAAGAATTGTCGTAATGTAAATTGTATGACGCATCTCGTGGATTCGCTTGATTTCCGGATGACAAATTGCCATGTATCGATCGAACGCTAATGCAGTAAGGATGAATGTCGAGCACATCTGAACTATTTAGTTATTGAGCTCATAAATGTCGCGGACAGCCGATGGGGAAGAATTTTTACCGGCCCGGCCCTTCTCTTTGGAGGGAAAATTTAGACGGAATCATTTTTGACAGAAATCTGGATTTTTGTGGTTATTGTACAAGAATTTATTTGTAATGGATTGAGAGCCTTTAAGAAGGAAACTGGGCTCCGAAACTTCAATATAATCATTTTAACAAAAATTTATCCATCATCCGGGTCGGTGCGTCAGGCCGGAATTTAGCACGTATGATTGAGCTAAACTGAAAAAAGGGTCGAATAAAACCGGCTATCTAGRTTGATCTCAAAAGTTTCTCAATCATTCTGTATATATTTATGCACGTTTCAGAATCAGAAATCGCTACAAATATTTGACAAGCCGTAGAAAGAGCGGAGGTCGAAATTATTAGACATTCACAAGGACGTCTTTACTAGAAACCTCTGGACCCGAGTTCCGTTTTCTTTACATAAGCTTTCAAGGGAATGAGTATCTGAAAACTATGATCCTAAGTCATTCTGAGCATTTATAGAAGCCTCAGTCTGTTTGGATGTTTTTCGATCGTTCCCCTTTTCTTTGCTCAGTTCCAAATTGAATTAGTTCATCAGCAAAGAAAAAATAGAAGGTTCCGAGTATTGCAATCATCCCAAGGGCCTTCAGACATTTTCGAAATCGCCAGAGACAAGAAAAGTGACGAGAGGAAAAAAAGATTGGCTGATTCAATTGTCAAGACAATCCGTGTCCCTTTCTTCTATTTCTGTGTGAATGCATGGATGTGACGACGTCGTTGTACTCGCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAATTTAGCACGTATGATTG</pcr_primer_p1>
		<pcr_primer_p2>CCTTGAAAGCTTATGTAAAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGAATTTAGCACGTATGATTGAGCTAAACTGAAAAAAGGGTCGAATAAAACCGGCTATCTAGGTTGATCTCAAAAGTTTCTCAATCATTCTGTATATATTTATGCACGTTTCAGAATCAGAAATCGCTACAAATATTTGACAAGCCGTAGAAAGAGCGGAGGTCGAAATTATTAGACATTCACAAGGACGTCTTTACTAGAAACCTCTGGACCCGAGTTCCGTTTTCTTTACATAAGCTTTCAAGG</canonical_amplicon>
		<polymorphic_amplicon>GGAATTTAGCACGTATGATTGAGCTAAACTGAAAAAAGGGTCGAATAAAACCGGCTATCTAGRTTGATCTCAAAAGTTTCTCAATCATTCTGTATATATTTATGCACGTTTCAGAATCAGAAATCGCTACAAATATTTGACAAGCCGTAGAAAGAGCGGAGGTCGAAATTATTAGACATTCACAAGGACGTCTTTACTAGAAACCTCTGGACCCGAGTTCCGTTTTCTTTACATAAGCTTTCAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23452</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>454228</contig_pos>
        <strand></strand>
        <context>ctttgagatg[G/A]aattcaataa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTTTTTTACAGGTGGAATATGGAATATGTCAGGAATTGTTCTTTGAGATG</left_flank>
        <right_flank>AATTCAATAAAATTTTTCCAAGAATTTATAAAAAAAGCTGTCGAGTGATA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTCGAGAGGAAGAAGAAGAGTTTGATGAGTTGGATGACGAGTGAAATCTTACTTCTATCACTTGATTTTCAAACGGCCAAAGTTTTTTTCGTGCACTTTTTAAACGTTCTACGAATTTTCGTTGCCTAGAATTTTGAGTATTTTTTTGAAAAATGACTACAGGTGACATAGAAAATGAGATCGCACCAGAATACGCAAACTCTACTTTCCAACTGTACCAACTGAGTTTGTCTTTGTTTAGACTAGACTAGCTGTGGGAATTGGGGATCCGGTCACGGATCGAGGGTGTGTTGCTAGAAATGAGTATATGGGTTATTTCTTTCGTTAATACTTGGTCAAAAACAAAAATTCTCCAGCTCGGCACGGTCAGGGCCGGCCAGGCCCGGGCAGTCCGGGTCAAATTCTGAAATTTCAAAATTTTCGAAGTTTTTATGGAATTTTCATTACTTTTTTACAGGTGGAATATGGAATATGTCAGGAATTGTTCTTTGAGATGGAATTCAATAAAATTTTTCCAAGAATTTATAAAAAAAGCTGTCGAGTGATATCTTACTTTTATCACTTGATTTTCAAATGGGCAAAGTTTTTTTAGTGCACTTTTTTACGTTCTTCGGATTTTCGTTGCCTAGAATTTTAAGTGTATTTTTTTCCAGAAAAACAACAGCTCCAATCAAAATACACAAACCCAATTTTTCCAACTGTACCAACTGAGTCCTTCTTTGTCTAGACTAGACTGGCTGTGGGAATTGGGGATCCGGTCACGGATCAAGGTTCCTGAGACGTGTTCCTAGAAATGGGTATATGGGAATCTTTTTCTTTGTTTATGAACAGCAGTCCAACAAGAAAACACAAATTTCTAAACACTGCAGGTGGGCGAAGACAGGTGAAAAAGGGCAGTTGGAAATAGAGGAATATCTGAGCAATGATTCCTATGAATTTATTTTGAGATTTAGGACATGCTATTCTTTTTGTAAATAATTCATATCGGTAAGCACGA</canonical>
            <polymorphic>CATTTCGAGAGGAAGAAGAAGAGTTTGATGAGTTGGATGACGAGTGAAATCTTACTTCTATCACTTGATTTTCAAACGGCCAAAGTTTTTTTCGTGCACTTTTTAAACGTTCTACGAATTTTCGTTGCCTAGAATTTTGAGTATTTTTTTGAAAAATGACTACAGGTGACATAGAAAATGAGATCGCACCAGAATACGCAAACTCTACTTTCCAACTGTACCAACTGAGTTTGTCTTTGTTTAGACTAGACTAGCTGTGGGAATTGGGGATCCGGTCACGGATCGAGGGTGTGTTGCTAGAAATGAGTATATGGGTTATTTCTTTCGTTAATACTTGGTCAAAAACAAAAATTCTCCAGCTCGGCACGGTCAGGGCCGGCCAGGCCCGGGCAGTCCGGGTCAAATTCTGAAATTTCAAAATTTTCGAAGTTTTTATGGAATTTTCATTACTTTTTTACAGGTGGAATATGGAATATGTCAGGAATTGTTCTTTGAGATGRAATTCAATAAAATTTTTCCAAGAATTTATAAAAAAAGCTGTCGAGTGATATCTTACTTTTATCACTTGATTTTCAAATGGGCAAAGTTTTTTTAGTGCACTTTTTTACGTTCTTCGGATTTTCGTTGCCTAGAATTTTAAGTGTATTTTTTTCCAGAAAAACAACAGCTCCAATCAAAATACACAAACCCAATTTTTCCAACTGTACCAACTGAGTCCTTCTTTGTCTAGACTAGACTGGCTGTGGGAATTGGGGATCCGGTCACGGATCAAGGTTCCTGAGACGTGTTCCTAGAAATGGGTATATGGGAATCTTTTTCTTTGTTTATGAACAGCAGTCCAACAAGAAAACACAAATTTCTAAACACTGCAGGTGGGCGAAGACAGGTGAAAAAGGGCAGTTGGAAATAGAGGAATATCTGAGCAATGATTCCTATGAATTTATTTTGAGATTTAGGACATGCTATTCTTTTTGTAAATAATTCATATCGGTAAGCACGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>222 217 116 110 83 63 62 53 20 16 12 10 8 8</canonical_bands>
                <polymorphic_bands>222 217 116 110 83 72 63 53 20 16 12 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGGTTATTTCTTTCGTTAATAC</pcr_primer_p1>
		<pcr_primer_p2>AAAGTAAGATATCACTCGACAGC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGGGTTATTTCTTTCGTTAATACTTGGTCAAAAACAAAAATTCTCCAGCTCGGCACGGTCAGGGCCGGCCAGGCCCGGGCAGTCCGGGTCAAATTCTGAAATTTCAAAATTTTCGAAGTTTTTATGGAATTTTCATTACTTTTTTACAGGTGGAATATGGAATATGTCAGGAATTGTTCTTTGAGATGGAATTCAATAAAATTTTTCCAAGAATTTATAAAAAAAGCTGTCGAGTGATATCTTACTTT</canonical_amplicon>
		<polymorphic_amplicon>TGGGTTATTTCTTTCGTTAATACTTGGTCAAAAACAAAAATTCTCCAGCTCGGCACGGTCAGGGCCGGCCAGGCCCGGGCAGTCCGGGTCAAATTCTGAAATTTCAAAATTTTCGAAGTTTTTATGGAATTTTCATTACTTTTTTACAGGTGGAATATGGAATATGTCAGGAATTGTTCTTTGAGATGRAATTCAATAAAATTTTTCCAAGAATTTATAAAAAAAGCTGTCGAGTGATATCTTACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23453</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>454639</contig_pos>
        <strand>+</strand>
        <context>TTGGAAATAG[A/G]GGAATATCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAACACTGCAGGTGGGCGAAGACAGGTGAAAAAGGGCAGTTGGAAATAG</left_flank>
        <right_flank>GGAATATCTGAGCAATGATTCCTATGAATTTATTTTGAGATTTAGGACAT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCAAAATTTTCGAAGTTTTTATGGAATTTTCATTACTTTTTTACAGGTGGAATATGGAATATGTCAGGAATTGTTCTTTGAGATGGAATTCAATAAAATTTTTCCAAGAATTTATAAAAAAAGCTGTCGAGTGATATCTTACTTTTATCACTTGATTTTCAAATGGGCAAAGTTTTTTTAGTGCACTTTTTTACGTTCTTCGGATTTTCGTTGCCTAGAATTTTAAGTGTATTTTTTTCCAGAAAAACAACAGCTCCAATCAAAATACACAAACCCAATTTTTCCAACTGTACCAACTGAGTCCTTCTTTGTCTAGACTAGACTGGCTGTGGGAATTGGGGATCCGGTCACGGATCAAGGTTCCTGAGACGTGTTCCTAGAAATGGGTATATGGGAATCTTTTTCTTTGTTTATGAACAGCAGTCCAACAAGAAAACACAAATTTCTAAACACTGCAGGTGGGCGAAGACAGGTGAAAAAGGGCAGTTGGAAATAGAGGAATATCTGAGCAATGATTCCTATGAATTTATTTTGAGATTTAGGACATGCTATTCTTTTTGTAAATAATTCATATCGGTAAGCACGAGAGAAATGTTTCTGGAAACCAAATAGTTGCTCATGACATAACCGCACACCACAACGCCCCAATAGACTTTTCGTTGGAAAAAATATTCAGACAGAGAGGGTAATGAATAAGAGATCGGTTTCATCGAGATGAAAAAGGAAAAGGATTTGAGAAAGTAAGAAAAATCCACGAATAATTATAAGCACTCCTCCAATTTGACTAGGGAGTCGACACTTGAGAATGAGAAGGAGAAGAGAAAGGAGATGGATCTTCTTATTTCCTATCCATTCACATTCCCATGAACTTTTTGGAATAGTGTAGACAAATGGCGATGGCGTCATTTTTATATTCCTACATTTTTGATTTGGTGCACAAAAACAGAGTGTGACTTGAAAATGAATTGTAGGTTTCTTGAGAAACGATACATTCTGT</canonical>
            <polymorphic>ATTTCAAAATTTTCGAAGTTTTTATGGAATTTTCATTACTTTTTTACAGGTGGAATATGGAATATGTCAGGAATTGTTCTTTGAGATGGAATTCAATAAAATTTTTCCAAGAATTTATAAAAAAAGCTGTCGAGTGATATCTTACTTTTATCACTTGATTTTCAAATGGGCAAAGTTTTTTTAGTGCACTTTTTTACGTTCTTCGGATTTTCGTTGCCTAGAATTTTAAGTGTATTTTTTTCCAGAAAAACAACAGCTCCAATCAAAATACACAAACCCAATTTTTCCAACTGTACCAACTGAGTCCTTCTTTGTCTAGACTAGACTGGCTGTGGGAATTGGGGATCCGGTCACGGATCAAGGTTCCTGAGACGTGTTCCTAGAAATGGGTATATGGGAATCTTTTTCTTTGTTTATGAACAGCAGTCCAACAAGAAAACACAAATTTCTAAACACTGCAGGTGGGCGAAGACAGGTGAAAAAGGGCAGTTGGAAATAGRGGAATATCTGAGCAATGATTCCTATGAATTTATTTTGAGATTTAGGACATGCTATTCTTTTTGTAAATAATTCATATCGGTAAGCACGAGAGAAATGTTTCTGGAAACCAAATAGTTGCTCATGACATAACCGCACACCACAACGCCCCAATAGACTTTTCGTTGGAAAAAATATTCAGACAGAGAGGGTAATGAATAAGAGATCGGTTTCATCGAGATGAAAAAGGAAAAGGATTTGAGAAAGTAAGAAAAATCCACGAATAATTATAAGCACTCCTCCAATTTGACTAGGGAGTCGACACTTGAGAATGAGAAGGAGAAGAGAAAGGAGATGGATCTTCTTATTTCCTATCCATTCACATTCCCATGAACTTTTTGGAATAGTGTAGACAAATGGCGATGGCGTCATTTTTATATTCCTACATTTTTGATTTGGTGCACAAAAACAGAGTGTGACTTGAAAATGAATTGTAGGTTTCTTGAGAAACGATACATTCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTTCCTAGAAATGGGTATATG</pcr_primer_p1>
		<pcr_primer_p2>ACTATTTGGTTTCCAGAAACATT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GTGTTCCTAGAAATGGGTATATGGGAATCTTTTTCTTTGTTTATGAACAGCAGTCCAACAAGAAAACACAAATTTCTAAACACTGCAGGTGGGCGAAGACAGGTGAAAAAGGGCAGTTGGAAATAGAGGAATATCTGAGCAATGATTCCTATGAATTTATTTTGAGATTTAGGACATGCTATTCTTTTTGTAAATAATTCATATCGGTAAGCACGAGAGAAATGTTTCTGGAAACCAAATAGT</canonical_amplicon>
		<polymorphic_amplicon>GTGTTCCTAGAAATGGGTATATGGGAATCTTTTTCTTTGTTTATGAACAGCAGTCCAACAAGAAAACACAAATTTCTAAACACTGCAGGTGGGCGAAGACAGGTGAAAAAGGGCAGTTGGAAATAGRGGAATATCTGAGCAATGATTCCTATGAATTTATTTTGAGATTTAGGACATGCTATTCTTTTTGTAAATAATTCATATCGGTAAGCACGAGAGAAATGTTTCTGGAAACCAAATAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23454</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>454772</contig_pos>
        <strand>+</strand>
        <context>TGACATAACC[A/G]CACACCACAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCACGAGAGAAATGTTTCTGGAAACCAAATAGTTGCTCATGACATAACC</left_flank>
        <right_flank>CACACCACAACGCCCCAATAGACTTTTCGTTGGAAAAAATATTCAGACAG</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGATATCTTACTTTTATCACTTGATTTTCAAATGGGCAAAGTTTTTTTAGTGCACTTTTTTACGTTCTTCGGATTTTCGTTGCCTAGAATTTTAAGTGTATTTTTTTCCAGAAAAACAACAGCTCCAATCAAAATACACAAACCCAATTTTTCCAACTGTACCAACTGAGTCCTTCTTTGTCTAGACTAGACTGGCTGTGGGAATTGGGGATCCGGTCACGGATCAAGGTTCCTGAGACGTGTTCCTAGAAATGGGTATATGGGAATCTTTTTCTTTGTTTATGAACAGCAGTCCAACAAGAAAACACAAATTTCTAAACACTGCAGGTGGGCGAAGACAGGTGAAAAAGGGCAGTTGGAAATAGAGGAATATCTGAGCAATGATTCCTATGAATTTATTTTGAGATTTAGGACATGCTATTCTTTTTGTAAATAATTCATATCGGTAAGCACGAGAGAAATGTTTCTGGAAACCAAATAGTTGCTCATGACATAACCGCACACCACAACGCCCCAATAGACTTTTCGTTGGAAAAAATATTCAGACAGAGAGGGTAATGAATAAGAGATCGGTTTCATCGAGATGAAAAAGGAAAAGGATTTGAGAAAGTAAGAAAAATCCACGAATAATTATAAGCACTCCTCCAATTTGACTAGGGAGTCGACACTTGAGAATGAGAAGGAGAAGAGAAAGGAGATGGATCTTCTTATTTCCTATCCATTCACATTCCCATGAACTTTTTGGAATAGTGTAGACAAATGGCGATGGCGTCATTTTTATATTCCTACATTTTTGATTTGGTGCACAAAAACAGAGTGTGACTTGAAAATGAATTGTAGGTTTCTTGAGAAACGATACATTCTGTGGGATTGACTAGTCAGAAGTGCAATGATCTTGAAAATGAATAATGGGAAACCCGACTCTTATAGGAAACTGAAGTTATTGGATTTTTCGAGAACAATTTGGAGTTAACACGACACCTAATTTCCAATAAATCC</canonical>
            <polymorphic>GTGATATCTTACTTTTATCACTTGATTTTCAAATGGGCAAAGTTTTTTTAGTGCACTTTTTTACGTTCTTCGGATTTTCGTTGCCTAGAATTTTAAGTGTATTTTTTTCCAGAAAAACAACAGCTCCAATCAAAATACACAAACCCAATTTTTCCAACTGTACCAACTGAGTCCTTCTTTGTCTAGACTAGACTGGCTGTGGGAATTGGGGATCCGGTCACGGATCAAGGTTCCTGAGACGTGTTCCTAGAAATGGGTATATGGGAATCTTTTTCTTTGTTTATGAACAGCAGTCCAACAAGAAAACACAAATTTCTAAACACTGCAGGTGGGCGAAGACAGGTGAAAAAGGGCAGTTGGAAATAGAGGAATATCTGAGCAATGATTCCTATGAATTTATTTTGAGATTTAGGACATGCTATTCTTTTTGTAAATAATTCATATCGGTAAGCACGAGAGAAATGTTTCTGGAAACCAAATAGTTGCTCATGACATAACCRCACACCACAACGCCCCAATAGACTTTTCGTTGGAAAAAATATTCAGACAGAGAGGGTAATGAATAAGAGATCGGTTTCATCGAGATGAAAAAGGAAAAGGATTTGAGAAAGTAAGAAAAATCCACGAATAATTATAAGCACTCCTCCAATTTGACTAGGGAGTCGACACTTGAGAATGAGAAGGAGAAGAGAAAGGAGATGGATCTTCTTATTTCCTATCCATTCACATTCCCATGAACTTTTTGGAATAGTGTAGACAAATGGCGATGGCGTCATTTTTATATTCCTACATTTTTGATTTGGTGCACAAAAACAGAGTGTGACTTGAAAATGAATTGTAGGTTTCTTGAGAAACGATACATTCTGTGGGATTGACTAGTCAGAAGTGCAATGATCTTGAAAATGAATAATGGGAAACCCGACTCTTATAGGAAACTGAAGTTATTGGATTTTTCGAGAACAATTTGGAGTTAACACGACACCTAATTTCCAATAAATCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAGATTTAGGACATGCTAT</pcr_primer_p1>
		<pcr_primer_p2>GAGTGCTTATAATTATTCGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAGATTTAGGACATGCTATTCTTTTTGTAAATAATTCATATCGGTAAGCACGAGAGAAATGTTTCTGGAAACCAAATAGTTGCTCATGACATAACCGCACACCACAACGCCCCAATAGACTTTTCGTTGGAAAAAATATTCAGACAGAGAGGGTAATGAATAAGAGATCGGTTTCATCGAGATGAAAAAGGAAAAGGATTTGAGAAAGTAAGAAAAATCCACGAATAATTATAAGCACTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAGATTTAGGACATGCTATTCTTTTTGTAAATAATTCATATCGGTAAGCACGAGAGAAATGTTTCTGGAAACCAAATAGTTGCTCATGACATAACCRCACACCACAACGCCCCAATAGACTTTTCGTTGGAAAAAATATTCAGACAGAGAGGGTAATGAATAAGAGATCGGTTTCATCGAGATGAAAAAGGAAAAGGATTTGAGAAAGTAAGAAAAATCCACGAATAATTATAAGCACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23455</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>455650</contig_pos>
        <strand>+</strand>
        <context>CCTTCTTGCC[A/G]CCATATTCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTGCAGGCATGCAGGATGGTCGCTCATTCCCTCGCTCCCCCTTCTTGCC</left_flank>
        <right_flank>CCATATTCACTAACATCCATTGTATCCCTCTGGGGTCTCAGTTACCCAGC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCAGAAGTGCAATGATCTTGAAAATGAATAATGGGAAACCCGACTCTTATAGGAAACTGAAGTTATTGGATTTTTCGAGAACAATTTGGAGTTAACACGACACCTAATTTCCAATAAATCCCCAAAAGTATGTCTAGACCAAGCCATCAAATAAAAAAAAAGCAATCGTAACCTCAAAAAACAATTGAATAATATGTTTGCGCCTCTAGACGTGCCAAGCTGCCCACAGGAGACTGCGTCTCTCACTTCCGCGCACTCTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCCGCGCCAAGGAGAAACACCAACCGTCAACCAGAGGCAGACAAACTCTCTCTAATCTCTATGCTCTCTCCCCTCCTTGTCTCTGCGTCTCTCGCATCCCCTATCACTGACCTATTGTCATCATGATCCCAGTCAGTTCTTCCAACCTGCAGGCATGCAGGATGGTCGCTCATTCCCTCGCTCCCCCTTCTTGCCGCCATATTCACTAACATCCATTGTATCCCTCTGGGGTCTCAGTTACCCAGCTTGTATTCAATAAACCCGTGTGAACCAATCACTGTGTTGTCTATCACCTCAATGGAAGGAGCCAAGGGTTGCATAGCAGTCACGGTTCGCTAGGAGTGTGGGCTCATCACCCCTCAATCCCAAACCGCGACAGATAACGATCAAATCAAGAAATACCGAGGAAATGGAGGAGGATTGGTTTTCTCTAGAGAATTATTTTTCAGGGATTCGTGTGAAAGAACCAATACGAAATTTTGTTTTTATCAATTGTATTTTTATAGTATCATGGGAAATTTTTTTTTCATGAACTACGGAAAATATTGGGATACGACCTGAAGTTTGTTCTTATAAAGTTCCTTTAAAGTGTAATCTCAAATCACATATCAATTAGATACATTTTCAGAAACAAACCTCATCTCGTTTCGTCACCAAAAACCTATTTTCGAAGAAGGGCAAACTAGACGAGAACAG</canonical>
            <polymorphic>GTCAGAAGTGCAATGATCTTGAAAATGAATAATGGGAAACCCGACTCTTATAGGAAACTGAAGTTATTGGATTTTTCGAGAACAATTTGGAGTTAACACGACACCTAATTTCCAATAAATCCCCAAAAGTATGTCTAGACCAAGCCATCAAATAAAAAAAAAGCAATCGTAACCTCAAAAAACAATTGAATAATATGTTTGCGCCTCTAGACGTGCCAAGCTGCCCACAGGAGACTGCGTCTCTCACTTCCGCGCACTCTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCCGCGCCAAGGAGAAACACCAACCGTCAACCAGAGGCAGACAAACTCTCTCTAATCTCTATGCTCTCTCCCCTCCTTGTCTCTGCGTCTCTCGCATCCCCTATCACTGACCTATTGTCATCATGATCCCAGTCAGTTCTTCCAACCTGCAGGCATGCAGGATGGTCGCTCATTCCCTCGCTCCCCCTTCTTGCCRCCATATTCACTAACATCCATTGTATCCCTCTGGGGTCTCAGTTACCCAGCTTGTATTCAATAAACCCGTGTGAACCAATCACTGTGTTGTCTATCACCTCAATGGAAGGAGCCAAGGGTTGCATAGCAGTCACGGTTCGCTAGGAGTGTGGGCTCATCACCCCTCAATCCCAAACCGCGACAGATAACGATCAAATCAAGAAATACCGAGGAAATGGAGGAGGATTGGTTTTCTCTAGAGAATTATTTTTCAGGGATTCGTGTGAAAGAACCAATACGAAATTTTGTTTTTATCAATTGTATTTTTATAGTATCATGGGAAATTTTTTTTTCATGAACTACGGAAAATATTGGGATACGACCTGAAGTTTGTTCTTATAAAGTTCCTTTAAAGTGTAATCTCAAATCACATATCAATTAGATACATTTTCAGAAACAAACCTCATCTCGTTTCGTCACCAAAAACCTATTTTCGAAGAAGGGCAAACTAGACGAGAACAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>325 250 192 177 56</canonical_bands>
                <polymorphic_bands>369 325 250 56</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 277 223</canonical_bands>
                <polymorphic_bands>777 223</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTCTAATCTCTATGCTCTCTCC</pcr_primer_p1>
		<pcr_primer_p2>ATTGAGGTGATAGACAACACAGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTCTCTAATCTCTATGCTCTCTCCCCTCCTTGTCTCTGCGTCTCTCGCATCCCCTATCACTGACCTATTGTCATCATGATCCCAGTCAGTTCTTCCAACCTGCAGGCATGCAGGATGGTCGCTCATTCCCTCGCTCCCCCTTCTTGCCGCCATATTCACTAACATCCATTGTATCCCTCTGGGGTCTCAGTTACCCAGCTTGTATTCAATAAACCCGTGTGAACCAATCACTGTGTTGTCTATCACCTCAAT</canonical_amplicon>
		<polymorphic_amplicon>CTCTCTAATCTCTATGCTCTCTCCCCTCCTTGTCTCTGCGTCTCTCGCATCCCCTATCACTGACCTATTGTCATCATGATCCCAGTCAGTTCTTCCAACCTGCAGGCATGCAGGATGGTCGCTCATTCCCTCGCTCCCCCTTCTTGCCRCCATATTCACTAACATCCATTGTATCCCTCTGGGGTCTCAGTTACCCAGCTTGTATTCAATAAACCCGTGTGAACCAATCACTGTGTTGTCTATCACCTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23456</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>455685</contig_pos>
        <strand>+</strand>
        <context>TCCCTCTGGG[A/G]TCTCAGTTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCCCCCTTCTTGCCGCCATATTCACTAACATCCATTGTATCCCTCTGGG</left_flank>
        <right_flank>TCTCAGTTACCCAGCTTGTATTCAATAAACCCGTGTGAACCAATCACTGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAACCCGACTCTTATAGGAAACTGAAGTTATTGGATTTTTCGAGAACAATTTGGAGTTAACACGACACCTAATTTCCAATAAATCCCCAAAAGTATGTCTAGACCAAGCCATCAAATAAAAAAAAAGCAATCGTAACCTCAAAAAACAATTGAATAATATGTTTGCGCCTCTAGACGTGCCAAGCTGCCCACAGGAGACTGCGTCTCTCACTTCCGCGCACTCTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCCGCGCCAAGGAGAAACACCAACCGTCAACCAGAGGCAGACAAACTCTCTCTAATCTCTATGCTCTCTCCCCTCCTTGTCTCTGCGTCTCTCGCATCCCCTATCACTGACCTATTGTCATCATGATCCCAGTCAGTTCTTCCAACCTGCAGGCATGCAGGATGGTCGCTCATTCCCTCGCTCCCCCTTCTTGCCGCCATATTCACTAACATCCATTGTATCCCTCTGGGGTCTCAGTTACCCAGCTTGTATTCAATAAACCCGTGTGAACCAATCACTGTGTTGTCTATCACCTCAATGGAAGGAGCCAAGGGTTGCATAGCAGTCACGGTTCGCTAGGAGTGTGGGCTCATCACCCCTCAATCCCAAACCGCGACAGATAACGATCAAATCAAGAAATACCGAGGAAATGGAGGAGGATTGGTTTTCTCTAGAGAATTATTTTTCAGGGATTCGTGTGAAAGAACCAATACGAAATTTTGTTTTTATCAATTGTATTTTTATAGTATCATGGGAAATTTTTTTTTCATGAACTACGGAAAATATTGGGATACGACCTGAAGTTTGTTCTTATAAAGTTCCTTTAAAGTGTAATCTCAAATCACATATCAATTAGATACATTTTCAGAAACAAACCTCATCTCGTTTCGTCACCAAAAACCTATTTTCGAAGAAGGGCAAACTAGACGAGAACAGTGAAATGTCATTCAAATTTTATACAATTATTGTCA</canonical>
            <polymorphic>GAAACCCGACTCTTATAGGAAACTGAAGTTATTGGATTTTTCGAGAACAATTTGGAGTTAACACGACACCTAATTTCCAATAAATCCCCAAAAGTATGTCTAGACCAAGCCATCAAATAAAAAAAAAGCAATCGTAACCTCAAAAAACAATTGAATAATATGTTTGCGCCTCTAGACGTGCCAAGCTGCCCACAGGAGACTGCGTCTCTCACTTCCGCGCACTCTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCCGCGCCAAGGAGAAACACCAACCGTCAACCAGAGGCAGACAAACTCTCTCTAATCTCTATGCTCTCTCCCCTCCTTGTCTCTGCGTCTCTCGCATCCCCTATCACTGACCTATTGTCATCATGATCCCAGTCAGTTCTTCCAACCTGCAGGCATGCAGGATGGTCGCTCATTCCCTCGCTCCCCCTTCTTGCCGCCATATTCACTAACATCCATTGTATCCCTCTGGGRTCTCAGTTACCCAGCTTGTATTCAATAAACCCGTGTGAACCAATCACTGTGTTGTCTATCACCTCAATGGAAGGAGCCAAGGGTTGCATAGCAGTCACGGTTCGCTAGGAGTGTGGGCTCATCACCCCTCAATCCCAAACCGCGACAGATAACGATCAAATCAAGAAATACCGAGGAAATGGAGGAGGATTGGTTTTCTCTAGAGAATTATTTTTCAGGGATTCGTGTGAAAGAACCAATACGAAATTTTGTTTTTATCAATTGTATTTTTATAGTATCATGGGAAATTTTTTTTTCATGAACTACGGAAAATATTGGGATACGACCTGAAGTTTGTTCTTATAAAGTTCCTTTAAAGTGTAATCTCAAATCACATATCAATTAGATACATTTTCAGAAACAAACCTCATCTCGTTTCGTCACCAAAAACCTATTTTCGAAGAAGGGCAAACTAGACGAGAACAGTGAAATGTCATTCAAATTTTATACAATTATTGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTCTAATCTCTATGCTCTCTCC</pcr_primer_p1>
		<pcr_primer_p2>ATTGAGGTGATAGACAACACAGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTCTCTAATCTCTATGCTCTCTCCCCTCCTTGTCTCTGCGTCTCTCGCATCCCCTATCACTGACCTATTGTCATCATGATCCCAGTCAGTTCTTCCAACCTGCAGGCATGCAGGATGGTCGCTCATTCCCTCGCTCCCCCTTCTTGCCGCCATATTCACTAACATCCATTGTATCCCTCTGGGGTCTCAGTTACCCAGCTTGTATTCAATAAACCCGTGTGAACCAATCACTGTGTTGTCTATCACCTCAAT</canonical_amplicon>
		<polymorphic_amplicon>CTCTCTAATCTCTATGCTCTCTCCCCTCCTTGTCTCTGCGTCTCTCGCATCCCCTATCACTGACCTATTGTCATCATGATCCCAGTCAGTTCTTCCAACCTGCAGGCATGCAGGATGGTCGCTCATTCCCTCGCTCCCCCTTCTTGCCGCCATATTCACTAACATCCATTGTATCCCTCTGGGRTCTCAGTTACCCAGCTTGTATTCAATAAACCCGTGTGAACCAATCACTGTGTTGTCTATCACCTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23457</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>455973</contig_pos>
        <strand>+</strand>
        <context>TCATGGGAAA[A/C]TTTTTTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATACGAAATTTTGTTTTTATCAATTGTATTTTTATAGTATCATGGGAAA</left_flank>
        <right_flank>TTTTTTTTCATGAACTACGGAAAATATTGGGATACGACCTGAAGTTTGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAACCGTCAACCAGAGGCAGACAAACTCTCTCTAATCTCTATGCTCTCTCCCCTCCTTGTCTCTGCGTCTCTCGCATCCCCTATCACTGACCTATTGTCATCATGATCCCAGTCAGTTCTTCCAACCTGCAGGCATGCAGGATGGTCGCTCATTCCCTCGCTCCCCCTTCTTGCCGCCATATTCACTAACATCCATTGTATCCCTCTGGGGTCTCAGTTACCCAGCTTGTATTCAATAAACCCGTGTGAACCAATCACTGTGTTGTCTATCACCTCAATGGAAGGAGCCAAGGGTTGCATAGCAGTCACGGTTCGCTAGGAGTGTGGGCTCATCACCCCTCAATCCCAAACCGCGACAGATAACGATCAAATCAAGAAATACCGAGGAAATGGAGGAGGATTGGTTTTCTCTAGAGAATTATTTTTCAGGGATTCGTGTGAAAGAACCAATACGAAATTTTGTTTTTATCAATTGTATTTTTATAGTATCATGGGAAATTTTTTTTTCATGAACTACGGAAAATATTGGGATACGACCTGAAGTTTGTTCTTATAAAGTTCCTTTAAAGTGTAATCTCAAATCACATATCAATTAGATACATTTTCAGAAACAAACCTCATCTCGTTTCGTCACCAAAAACCTATTTTCGAAGAAGGGCAAACTAGACGAGAACAGTGAAATGTCATTCAAATTTTATACAATTATTGTCATAAGATTTCATTTTCGGTTAGAATTGAAACTGAAATTTCGACAGACACATCACGAAGGGAATTTTTTTTGCAAACTGTTAATTCTAATAGAATTGGAAATAGGAAAGAATAATTGAATGTTGAGTCAGTGATTTCACAACCTGTGAGATAAATATACCATGTGTGGGAAAATGTTAGCTCGGCTTTTCACATAAATTTTGTGCATAGCTTTGACGGGAAAATAGAATATATCGATGTTCAATAACAACAATATATATTTGCACTGAAAAATAACACTTCCAGCATAAA</canonical>
            <polymorphic>CCAACCGTCAACCAGAGGCAGACAAACTCTCTCTAATCTCTATGCTCTCTCCCCTCCTTGTCTCTGCGTCTCTCGCATCCCCTATCACTGACCTATTGTCATCATGATCCCAGTCAGTTCTTCCAACCTGCAGGCATGCAGGATGGTCGCTCATTCCCTCGCTCCCCCTTCTTGCCGCCATATTCACTAACATCCATTGTATCCCTCTGGGGTCTCAGTTACCCAGCTTGTATTCAATAAACCCGTGTGAACCAATCACTGTGTTGTCTATCACCTCAATGGAAGGAGCCAAGGGTTGCATAGCAGTCACGGTTCGCTAGGAGTGTGGGCTCATCACCCCTCAATCCCAAACCGCGACAGATAACGATCAAATCAAGAAATACCGAGGAAATGGAGGAGGATTGGTTTTCTCTAGAGAATTATTTTTCAGGGATTCGTGTGAAAGAACCAATACGAAATTTTGTTTTTATCAATTGTATTTTTATAGTATCATGGGAAAMTTTTTTTTCATGAACTACGGAAAATATTGGGATACGACCTGAAGTTTGTTCTTATAAAGTTCCTTTAAAGTGTAATCTCAAATCACATATCAATTAGATACATTTTCAGAAACAAACCTCATCTCGTTTCGTCACCAAAAACCTATTTTCGAAGAAGGGCAAACTAGACGAGAACAGTGAAATGTCATTCAAATTTTATACAATTATTGTCATAAGATTTCATTTTCGGTTAGAATTGAAACTGAAATTTCGACAGACACATCACGAAGGGAATTTTTTTTGCAAACTGTTAATTCTAATAGAATTGGAAATAGGAAAGAATAATTGAATGTTGAGTCAGTGATTTCACAACCTGTGAGATAAATATACCATGTGTGGGAAAATGTTAGCTCGGCTTTTCACATAAATTTTGTGCATAGCTTTGACGGGAAAATAGAATATATCGATGTTCAATAACAACAATATATATTTGCACTGAAAAATAACACTTCCAGCATAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>456 194 134 95 54 41 26</canonical_bands>
                <polymorphic_bands>456 235 134 95 54 26</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>417 100 95 94 83 39 32 26 26 20 20 15 12 11 10</canonical_bands>
                <polymorphic_bands>417 120 100 95 83 39 32 26 20 20 15 12 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCGTGTGAAAGAACCAATAC</pcr_primer_p1>
		<pcr_primer_p2>CATTTCACTGTTCTCGTCTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTCGTGTGAAAGAACCAATACGAAATTTTGTTTTTATCAATTGTATTTTTATAGTATCATGGGAAATTTTTTTTTCATGAACTACGGAAAATATTGGGATACGACCTGAAGTTTGTTCTTATAAAGTTCCTTTAAAGTGTAATCTCAAATCACATATCAATTAGATACATTTTCAGAAACAAACCTCATCTCGTTTCGTCACCAAAAACCTATTTTCGAAGAAGGGCAAACTAGACGAGAACAGTGAAATG</canonical_amplicon>
		<polymorphic_amplicon>ATTCGTGTGAAAGAACCAATACGAAATTTTGTTTTTATCAATTGTATTTTTATAGTATCATGGGAAAMTTTTTTTTCATGAACTACGGAAAATATTGGGATACGACCTGAAGTTTGTTCTTATAAAGTTCCTTTAAAGTGTAATCTCAAATCACATATCAATTAGATACATTTTCAGAAACAAACCTCATCTCGTTTCGTCACCAAAAACCTATTTTCGAAGAAGGGCAAACTAGACGAGAACAGTGAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23458</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>456011</contig_pos>
        <strand></strand>
        <context>TGGGATACGA[C/A]CTGAAGTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TATCATGGGAAATTTTTTTTTCATGAACTACGGAAAATATTGGGATACGA</left_flank>
        <right_flank>CTGAAGTTTGTTCTTATAAAGTTCCTTTAAAGTGTAATCTCAAATCACAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTATGCTCTCTCCCCTCCTTGTCTCTGCGTCTCTCGCATCCCCTATCACTGACCTATTGTCATCATGATCCCAGTCAGTTCTTCCAACCTGCAGGCATGCAGGATGGTCGCTCATTCCCTCGCTCCCCCTTCTTGCCGCCATATTCACTAACATCCATTGTATCCCTCTGGGGTCTCAGTTACCCAGCTTGTATTCAATAAACCCGTGTGAACCAATCACTGTGTTGTCTATCACCTCAATGGAAGGAGCCAAGGGTTGCATAGCAGTCACGGTTCGCTAGGAGTGTGGGCTCATCACCCCTCAATCCCAAACCGCGACAGATAACGATCAAATCAAGAAATACCGAGGAAATGGAGGAGGATTGGTTTTCTCTAGAGAATTATTTTTCAGGGATTCGTGTGAAAGAACCAATACGAAATTTTGTTTTTATCAATTGTATTTTTATAGTATCATGGGAAATTTTTTTTTCATGAACTACGGAAAATATTGGGATACGACCTGAAGTTTGTTCTTATAAAGTTCCTTTAAAGTGTAATCTCAAATCACATATCAATTAGATACATTTTCAGAAACAAACCTCATCTCGTTTCGTCACCAAAAACCTATTTTCGAAGAAGGGCAAACTAGACGAGAACAGTGAAATGTCATTCAAATTTTATACAATTATTGTCATAAGATTTCATTTTCGGTTAGAATTGAAACTGAAATTTCGACAGACACATCACGAAGGGAATTTTTTTTGCAAACTGTTAATTCTAATAGAATTGGAAATAGGAAAGAATAATTGAATGTTGAGTCAGTGATTTCACAACCTGTGAGATAAATATACCATGTGTGGGAAAATGTTAGCTCGGCTTTTCACATAAATTTTGTGCATAGCTTTGACGGGAAAATAGAATATATCGATGTTCAATAACAACAATATATATTTGCACTGAAAAATAACACTTCCAGCATAAATTATTATGCTTCATAATATCCTAACTATAAGATTACAA</canonical>
            <polymorphic>TCTATGCTCTCTCCCCTCCTTGTCTCTGCGTCTCTCGCATCCCCTATCACTGACCTATTGTCATCATGATCCCAGTCAGTTCTTCCAACCTGCAGGCATGCAGGATGGTCGCTCATTCCCTCGCTCCCCCTTCTTGCCGCCATATTCACTAACATCCATTGTATCCCTCTGGGGTCTCAGTTACCCAGCTTGTATTCAATAAACCCGTGTGAACCAATCACTGTGTTGTCTATCACCTCAATGGAAGGAGCCAAGGGTTGCATAGCAGTCACGGTTCGCTAGGAGTGTGGGCTCATCACCCCTCAATCCCAAACCGCGACAGATAACGATCAAATCAAGAAATACCGAGGAAATGGAGGAGGATTGGTTTTCTCTAGAGAATTATTTTTCAGGGATTCGTGTGAAAGAACCAATACGAAATTTTGTTTTTATCAATTGTATTTTTATAGTATCATGGGAAATTTTTTTTTCATGAACTACGGAAAATATTGGGATACGAMCTGAAGTTTGTTCTTATAAAGTTCCTTTAAAGTGTAATCTCAAATCACATATCAATTAGATACATTTTCAGAAACAAACCTCATCTCGTTTCGTCACCAAAAACCTATTTTCGAAGAAGGGCAAACTAGACGAGAACAGTGAAATGTCATTCAAATTTTATACAATTATTGTCATAAGATTTCATTTTCGGTTAGAATTGAAACTGAAATTTCGACAGACACATCACGAAGGGAATTTTTTTTGCAAACTGTTAATTCTAATAGAATTGGAAATAGGAAAGAATAATTGAATGTTGAGTCAGTGATTTCACAACCTGTGAGATAAATATACCATGTGTGGGAAAATGTTAGCTCGGCTTTTCACATAAATTTTGTGCATAGCTTTGACGGGAAAATAGAATATATCGATGTTCAATAACAACAATATATATTTGCACTGAAAAATAACACTTCCAGCATAAATTATTATGCTTCATAATATCCTAACTATAAGATTACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCGTGTGAAAGAACCAATAC</pcr_primer_p1>
		<pcr_primer_p2>CATTTCACTGTTCTCGTCTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTCGTGTGAAAGAACCAATACGAAATTTTGTTTTTATCAATTGTATTTTTATAGTATCATGGGAAATTTTTTTTTCATGAACTACGGAAAATATTGGGATACGACCTGAAGTTTGTTCTTATAAAGTTCCTTTAAAGTGTAATCTCAAATCACATATCAATTAGATACATTTTCAGAAACAAACCTCATCTCGTTTCGTCACCAAAAACCTATTTTCGAAGAAGGGCAAACTAGACGAGAACAGTGAAATG</canonical_amplicon>
		<polymorphic_amplicon>ATTCGTGTGAAAGAACCAATACGAAATTTTGTTTTTATCAATTGTATTTTTATAGTATCATGGGAAATTTTTTTTTCATGAACTACGGAAAATATTGGGATACGAMCTGAAGTTTGTTCTTATAAAGTTCCTTTAAAGTGTAATCTCAAATCACATATCAATTAGATACATTTTCAGAAACAAACCTCATCTCGTTTCGTCACCAAAAACCTATTTTCGAAGAAGGGCAAACTAGACGAGAACAGTGAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23459</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>458125</contig_pos>
        <strand>+</strand>
        <context>ATGCAATTTC[A/G]ATTCCTTGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATGCCCATGGTTCACGAGCCTCCCCGGAAACACGAAAAATGCAATTTC</left_flank>
        <right_flank>ATTCCTTGTGGGATCGCTTGCTCAAATCGGCATACCACTGGTTTCGTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATGGGGACAAGTCATGGGGATTCCTCCTCGTTTTTTCGTTTACTCAATTCAAACATTGGTAGCCATTTTTGCATTCGCTGGAGTTGGCCTTCTTGAAAACCGGCAAAATCTGCTGCATACAAAATGGAAGATTGATAGAAATTGGGTTCGAATCCTCTTGAATATTTTCAATTACGTGTTTGCCTGTGGAATTTTGATTCCTCCGTACTTGGAAACCTTTGATACTCAAGCTATGGCAATGGAAGTTTTCAAGGTTCAGTTATTCATCGAACTTCAAGACTCGTTTCTCTTTCAGATCATTCCTTGCCCTGTAATAGAATTTTTCGACTCTCGTTTATTTTTTGTCACAAATAAGCCAGTGCTGGTGACGATTCTAATGGCATCCCTAATGATGGTTCTCTTACCACAAGGCATATTTTATGTAAGCCATACTTGGTACCATCTTGTTTATGCCCATGGTTCACGAGCCTCCCCGGAAACACGAAAAATGCAATTTCGATTCCTTGTGGGATCGCTTGCTCAAATCGGCATACCACTGGTTTCGTTTTTGAATCCTGTTTTATATATCTGGTTATCACTTAATACAGGTTACTACAATCACGGTGAGTCACCTATAGTAACTATTCTGAAAACTAAAGACCGAATTGCAGTGCTTAATAATCATCTGGCTGTCCTCATGTCTTTACACGGGTTATTGGGAACCATCTGCTTACTTTTGGTGCACAAGCATTATAGACAACATCTAATCAGAATGTTAACTCGTAGAAAAGCTCAAGTGAATAGGACCACTGTTGCTTCAGTTTTGATTAATTCGAATGTCTAACTGTGTGAAAAGATTTCAATGCAGTAAGTGGGTCTAAGCATTTATGATGAACCTTGAATAAAGTAACTAAATGTTTGGGAAAAATCAAAAAAGAAACAGAATGTAATAACTTCATTTCAATTCAATTCAATTTATTACGTATCTGAGAATACATACATTAATCATATGGGTGAGG</canonical>
            <polymorphic>GGATGGGGACAAGTCATGGGGATTCCTCCTCGTTTTTTCGTTTACTCAATTCAAACATTGGTAGCCATTTTTGCATTCGCTGGAGTTGGCCTTCTTGAAAACCGGCAAAATCTGCTGCATACAAAATGGAAGATTGATAGAAATTGGGTTCGAATCCTCTTGAATATTTTCAATTACGTGTTTGCCTGTGGAATTTTGATTCCTCCGTACTTGGAAACCTTTGATACTCAAGCTATGGCAATGGAAGTTTTCAAGGTTCAGTTATTCATCGAACTTCAAGACTCGTTTCTCTTTCAGATCATTCCTTGCCCTGTAATAGAATTTTTCGACTCTCGTTTATTTTTTGTCACAAATAAGCCAGTGCTGGTGACGATTCTAATGGCATCCCTAATGATGGTTCTCTTACCACAAGGCATATTTTATGTAAGCCATACTTGGTACCATCTTGTTTATGCCCATGGTTCACGAGCCTCCCCGGAAACACGAAAAATGCAATTTCRATTCCTTGTGGGATCGCTTGCTCAAATCGGCATACCACTGGTTTCGTTTTTGAATCCTGTTTTATATATCTGGTTATCACTTAATACAGGTTACTACAATCACGGTGAGTCACCTATAGTAACTATTCTGAAAACTAAAGACCGAATTGCAGTGCTTAATAATCATCTGGCTGTCCTCATGTCTTTACACGGGTTATTGGGAACCATCTGCTTACTTTTGGTGCACAAGCATTATAGACAACATCTAATCAGAATGTTAACTCGTAGAAAAGCTCAAGTGAATAGGACCACTGTTGCTTCAGTTTTGATTAATTCGAATGTCTAACTGTGTGAAAAGATTTCAATGCAGTAAGTGGGTCTAAGCATTTATGATGAACCTTGAATAAAGTAACTAAATGTTTGGGAAAAATCAAAAAAGAAACAGAATGTAATAACTTCATTTCAATTCAATTCAATTTATTACGTATCTGAGAATACATACATTAATCATATGGGTGAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>316 185 172 151 119 57</canonical_bands>
                <polymorphic_bands>488 185 151 119 57</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>393 131 128 82 55 52 48 46 44 21</canonical_bands>
                <polymorphic_bands>393 180 131 82 55 48 46 44 21</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>448 174 131 128 52 46 21</canonical_bands>
                <polymorphic_bands>448 180 174 131 46 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTTACCACAAGGCATATTTTA</pcr_primer_p1>
		<pcr_primer_p2>ATTCGGTCTTTAGTTTTCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTCTTACCACAAGGCATATTTTATGTAAGCCATACTTGGTACCATCTTGTTTATGCCCATGGTTCACGAGCCTCCCCGGAAACACGAAAAATGCAATTTCGATTCCTTGTGGGATCGCTTGCTCAAATCGGCATACCACTGGTTTCGTTTTTGAATCCTGTTTTATATATCTGGTTATCACTTAATACAGGTTACTACAATCACGGTGAGTCACCTATAGTAACTATTCTGAAAACTAAAGACCGAAT</canonical_amplicon>
		<polymorphic_amplicon>CTCTTACCACAAGGCATATTTTATGTAAGCCATACTTGGTACCATCTTGTTTATGCCCATGGTTCACGAGCCTCCCCGGAAACACGAAAAATGCAATTTCRATTCCTTGTGGGATCGCTTGCTCAAATCGGCATACCACTGGTTTCGTTTTTGAATCCTGTTTTATATATCTGGTTATCACTTAATACAGGTTACTACAATCACGGTGAGTCACCTATAGTAACTATTCTGAAAACTAAAGACCGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23460</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>464925</contig_pos>
        <strand></strand>
        <context>AAAAGTTCCA[C/A]MATTTATATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TAATCAAACAGTTTTTTCCATTAGTCTCGAACAATTTCTAAAAAGTTCCA</left_flank>
        <right_flank>AATTTATATTGCTTGTTTTTCTTAAATAGGAAGCCATACTGGAAATAGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTTCCATGAAAAGTGTAGAGCTAACAGCCAGAGCCATCAGCCAAATCATCACAACGTAGGGAACTGTAGACGTGGAAACTGAATGTCTCTGGTATTCCGTTGGAAACATGATTGCAAAGTAACGATCCAAACTGATAGCAACCAGATGAACAATGCTCGCAGTTGTTGAAAAGACTCCTGAAACCAGGTGAAACTGACACCAGGTGTATCCTAATGTCCAATGATCGTTATGCATTTTATAGTAGAGAGACAGTGGCATGACAATCAGTCCGACCAAAGATCAGATACTGCTAATGATGCGATGAACTTGTTAGTTGTAACGGACCGTAGTTTTCTGTCAACGGCGACGGCGAATATGACCATTGTGTTTCCAAAGACTACGAGGATAATAAGAAGCAATAAGAAGGCGTGAAAGGCATTCCACTGGAACGAGTTCTCATCCTGAAATAATCAAACAGTTTTTTCCATTAGTCTCGAACAATTTCTAAAAAGTTCCACAATTTATATTGCTTGTTTTTCTTAAATAGGAAGCCATACTGGAAATAGAATGAATCAAAAAGTCTCTCTCACCTGTGGAATCTGGTCAGTGTCATTTGAAACTGACAATAACATGTTTTGTCGTTTCGAATGGACTGGAAGGCTTCAACAGCCAAGTTATGTTTTGGCCATTGTTGCAGATGTAGAGCTGAAAATTGAAAATTGGTCAAAACCAGCCTCAGTGTCAACCAAAAGAGACGAAGAGAGAGAGAGCATAGTTGAAGTTATGGGGCGGAACCGTTGACTAATTGAAAGCGGAGCGTGCAAGTTATGAAGAAACAGAAGAAAACTACTTGAAAAATAAAAACTCTCACGTCATCTGATAAGACTGAAGAGGTCGGGGAACGAGGTGTTGGGTGGTGGTGTCAAGAGGCGTCGGCCAACAAATATATTGGGGAAGCTCTCAATAGCCTATCCGTTTTTGGGGAATTTGGGCAAGAAATGAAGAAGAGCAGAAGAAG</canonical>
            <polymorphic>CTGTTCCATGAAAAGTGTAGAGCTAACAGCCAGAGCCATCAGCCAAATCATCACAACGTAGGGAACTGTAGACGTGGAAACTGAATGTCTCTGGTATTCCGTTGGAAACATGATTGCAAAGTAACGATCCAAACTGATAGCAACCAGATGAACAATGCTCGCAGTTGTTGAAAAGACTCCTGAAACCAGGTGAAACTGACACCAGGTGTATCCTAATGTCCAATGATCGTTATGCATTTTATAGTAGAGAGACAGTGGCATGACAATCAGTCCGACCAAAGATCAGATACTGCTAATGATGCGATGAACTTGTTAGTTGTAACGGACCGTAGTTTTCTGTCAACGGCGACGGCGAATATGACCATTGTGTTTCCAAAGACTACGAGGATAATAAGAAGCAATAAGAAGGCGTGAAAGGCATTCCACTGGAACGAGTTCTCATCCTGAAATAATCAAACAGTTTTTTCCATTAGTCTCGAACAATTTCTAAAAAGTTCCAMAATTTATATTGCTTGTTTTTCTTAAATAGGAAGCCATACTGGAAATAGAATGAATCAAAAAGTCTCTCTCACCTGTGGAATCTGGTCAGTGTCATTTGAAACTGACAATAACATGTTTTGTCGTTTCGAATGGACTGGAAGGCTTCAACAGCCAAGTTATGTTTTGGCCATTGTTGCAGATGTAGAGCTGAAAATTGAAAATTGGTCAAAACCAGCCTCAGTGTCAACCAAAAGAGACGAAGAGAGAGAGAGCATAGTTGAAGTTATGGGGCGGAACCGTTGACTAATTGAAAGCGGAGCGTGCAAGTTATGAAGAAACAGAAGAAAACTACTTGAAAAATAAAAACTCTCACGTCATCTGATAAGACTGAAGAGGTCGGGGAACGAGGTGTTGGGTGGTGGTGTCAAGAGGCGTCGGCCAACAAATATATTGGGGAAGCTCTCAATAGCCTATCCGTTTTTGGGGAATTTGGGCAAGAAATGAAGAAGAGCAGAAGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>132 116 112 96 80 74 72 49 49 44 39 36 23 17 14 12 9 7 7 6 3 3</canonical_bands>
                <polymorphic_bands>146 132 116 112 96 80 49 49 44 39 36 23 17 14 12 9 7 7 6 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCAAAGACTACGAGGATAATA</pcr_primer_p1>
		<pcr_primer_p2>AAAACATGTTATTGTCAGTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCCAAAGACTACGAGGATAATAAGAAGCAATAAGAAGGCGTGAAAGGCATTCCACTGGAACGAGTTCTCATCCTGAAATAATCAAACAGTTTTTTCCATTAGTCTCGAACAATTTCTAAAAAGTTCCACAATTTATATTGCTTGTTTTTCTTAAATAGGAAGCCATACTGGAAATAGAATGAATCAAAAAGTCTCTCTCACCTGTGGAATCTGGTCAGTGTCATTTGAAACTGACAATAACATGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTCCAAAGACTACGAGGATAATAAGAAGCAATAAGAAGGCGTGAAAGGCATTCCACTGGAACGAGTTCTCATCCTGAAATAATCAAACAGTTTTTTCCATTAGTCTCGAACAATTTCTAAAAAGTTCCAMAATTTATATTGCTTGTTTTTCTTAAATAGGAAGCCATACTGGAAATAGAATGAATCAAAAAGTCTCTCTCACCTGTGGAATCTGGTCAGTGTCATTTGAAACTGACAATAACATGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23461</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>464926</contig_pos>
        <strand>+</strand>
        <context>AAAGTTCCAM[A/C]ATTTATATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATCAAACAGTTTTTTCCATTAGTCTCGAACAATTTCTAAAAAGTTCCAC</left_flank>
        <right_flank>ATTTATATTGCTTGTTTTTCTTAAATAGGAAGCCATACTGGAAATAGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTCCATGAAAAGTGTAGAGCTAACAGCCAGAGCCATCAGCCAAATCATCACAACGTAGGGAACTGTAGACGTGGAAACTGAATGTCTCTGGTATTCCGTTGGAAACATGATTGCAAAGTAACGATCCAAACTGATAGCAACCAGATGAACAATGCTCGCAGTTGTTGAAAAGACTCCTGAAACCAGGTGAAACTGACACCAGGTGTATCCTAATGTCCAATGATCGTTATGCATTTTATAGTAGAGAGACAGTGGCATGACAATCAGTCCGACCAAAGATCAGATACTGCTAATGATGCGATGAACTTGTTAGTTGTAACGGACCGTAGTTTTCTGTCAACGGCGACGGCGAATATGACCATTGTGTTTCCAAAGACTACGAGGATAATAAGAAGCAATAAGAAGGCGTGAAAGGCATTCCACTGGAACGAGTTCTCATCCTGAAATAATCAAACAGTTTTTTCCATTAGTCTCGAACAATTTCTAAAAAGTTCCACAATTTATATTGCTTGTTTTTCTTAAATAGGAAGCCATACTGGAAATAGAATGAATCAAAAAGTCTCTCTCACCTGTGGAATCTGGTCAGTGTCATTTGAAACTGACAATAACATGTTTTGTCGTTTCGAATGGACTGGAAGGCTTCAACAGCCAAGTTATGTTTTGGCCATTGTTGCAGATGTAGAGCTGAAAATTGAAAATTGGTCAAAACCAGCCTCAGTGTCAACCAAAAGAGACGAAGAGAGAGAGAGCATAGTTGAAGTTATGGGGCGGAACCGTTGACTAATTGAAAGCGGAGCGTGCAAGTTATGAAGAAACAGAAGAAAACTACTTGAAAAATAAAAACTCTCACGTCATCTGATAAGACTGAAGAGGTCGGGGAACGAGGTGTTGGGTGGTGGTGTCAAGAGGCGTCGGCCAACAAATATATTGGGGAAGCTCTCAATAGCCTATCCGTTTTTGGGGAATTTGGGCAAGAAATGAAGAAGAGCAGAAGAAGT</canonical>
            <polymorphic>TGTTCCATGAAAAGTGTAGAGCTAACAGCCAGAGCCATCAGCCAAATCATCACAACGTAGGGAACTGTAGACGTGGAAACTGAATGTCTCTGGTATTCCGTTGGAAACATGATTGCAAAGTAACGATCCAAACTGATAGCAACCAGATGAACAATGCTCGCAGTTGTTGAAAAGACTCCTGAAACCAGGTGAAACTGACACCAGGTGTATCCTAATGTCCAATGATCGTTATGCATTTTATAGTAGAGAGACAGTGGCATGACAATCAGTCCGACCAAAGATCAGATACTGCTAATGATGCGATGAACTTGTTAGTTGTAACGGACCGTAGTTTTCTGTCAACGGCGACGGCGAATATGACCATTGTGTTTCCAAAGACTACGAGGATAATAAGAAGCAATAAGAAGGCGTGAAAGGCATTCCACTGGAACGAGTTCTCATCCTGAAATAATCAAACAGTTTTTTCCATTAGTCTCGAACAATTTCTAAAAAGTTCCACMATTTATATTGCTTGTTTTTCTTAAATAGGAAGCCATACTGGAAATAGAATGAATCAAAAAGTCTCTCTCACCTGTGGAATCTGGTCAGTGTCATTTGAAACTGACAATAACATGTTTTGTCGTTTCGAATGGACTGGAAGGCTTCAACAGCCAAGTTATGTTTTGGCCATTGTTGCAGATGTAGAGCTGAAAATTGAAAATTGGTCAAAACCAGCCTCAGTGTCAACCAAAAGAGACGAAGAGAGAGAGAGCATAGTTGAAGTTATGGGGCGGAACCGTTGACTAATTGAAAGCGGAGCGTGCAAGTTATGAAGAAACAGAAGAAAACTACTTGAAAAATAAAAACTCTCACGTCATCTGATAAGACTGAAGAGGTCGGGGAACGAGGTGTTGGGTGGTGGTGTCAAGAGGCGTCGGCCAACAAATATATTGGGGAAGCTCTCAATAGCCTATCCGTTTTTGGGGAATTTGGGCAAGAAATGAAGAAGAGCAGAAGAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>480 192 181 86 35 19 7</canonical_bands>
                <polymorphic_bands>480 211 181 86 35 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCAAAGACTACGAGGATAATA</pcr_primer_p1>
		<pcr_primer_p2>AAAACATGTTATTGTCAGTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCCAAAGACTACGAGGATAATAAGAAGCAATAAGAAGGCGTGAAAGGCATTCCACTGGAACGAGTTCTCATCCTGAAATAATCAAACAGTTTTTTCCATTAGTCTCGAACAATTTCTAAAAAGTTCCACAATTTATATTGCTTGTTTTTCTTAAATAGGAAGCCATACTGGAAATAGAATGAATCAAAAAGTCTCTCTCACCTGTGGAATCTGGTCAGTGTCATTTGAAACTGACAATAACATGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTCCAAAGACTACGAGGATAATAAGAAGCAATAAGAAGGCGTGAAAGGCATTCCACTGGAACGAGTTCTCATCCTGAAATAATCAAACAGTTTTTTCCATTAGTCTCGAACAATTTCTAAAAAGTTCCACMATTTATATTGCTTGTTTTTCTTAAATAGGAAGCCATACTGGAAATAGAATGAATCAAAAAGTCTCTCTCACCTGTGGAATCTGGTCAGTGTCATTTGAAACTGACAATAACATGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23462</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>465295</contig_pos>
        <strand>+</strand>
        <context>TGATAAGACT[A/G]AAGAGGTCGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAGAAAACTACTTGAAAAATAAAAACTCTCACGTCATCTGATAAGACT</left_flank>
        <right_flank>AAGAGGTCGGGGAACGAGGTGTTGGGTGGTGGTGTCAAGAGGCGTCGGCC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCAAAGACTACGAGGATAATAAGAAGCAATAAGAAGGCGTGAAAGGCATTCCACTGGAACGAGTTCTCATCCTGAAATAATCAAACAGTTTTTTCCATTAGTCTCGAACAATTTCTAAAAAGTTCCACAATTTATATTGCTTGTTTTTCTTAAATAGGAAGCCATACTGGAAATAGAATGAATCAAAAAGTCTCTCTCACCTGTGGAATCTGGTCAGTGTCATTTGAAACTGACAATAACATGTTTTGTCGTTTCGAATGGACTGGAAGGCTTCAACAGCCAAGTTATGTTTTGGCCATTGTTGCAGATGTAGAGCTGAAAATTGAAAATTGGTCAAAACCAGCCTCAGTGTCAACCAAAAGAGACGAAGAGAGAGAGAGCATAGTTGAAGTTATGGGGCGGAACCGTTGACTAATTGAAAGCGGAGCGTGCAAGTTATGAAGAAACAGAAGAAAACTACTTGAAAAATAAAAACTCTCACGTCATCTGATAAGACTGAAGAGGTCGGGGAACGAGGTGTTGGGTGGTGGTGTCAAGAGGCGTCGGCCAACAAATATATTGGGGAAGCTCTCAATAGCCTATCCGTTTTTGGGGAATTTGGGCAAGAAATGAAGAAGAGCAGAAGAAGTGGGTGTGAAGAAAAGAAGAAGAATAGGGGAGGAGTATACATGGATGCTTAATTGAATGAGAATGAGGGCAGATGCCTAAAAGCGGAAAGTTCGAGGATCCAGTAGTTTCGAGAAGACGTTGAATGTTTACATTCTGTAACCAAAAGGTTACTTCTTTGTTTTTTAAAGAAATAATGCGTCGACTTCAACGAGAATCTCACTTCTCTAGAAACATAAGAATCAAATCAACAAATCCATGAGAAAATTCTCAACTTAAGTATTCAGAATGGGCGGTTTTTGAGGGAGAGATGACCGATGGACGGTGAAGTCGGCCAAGTTCTAAAGACTCCAAAAGACTCCACCCCGTATCTCCTGACCAACTCTATCCAA</canonical>
            <polymorphic>TTCCAAAGACTACGAGGATAATAAGAAGCAATAAGAAGGCGTGAAAGGCATTCCACTGGAACGAGTTCTCATCCTGAAATAATCAAACAGTTTTTTCCATTAGTCTCGAACAATTTCTAAAAAGTTCCACAATTTATATTGCTTGTTTTTCTTAAATAGGAAGCCATACTGGAAATAGAATGAATCAAAAAGTCTCTCTCACCTGTGGAATCTGGTCAGTGTCATTTGAAACTGACAATAACATGTTTTGTCGTTTCGAATGGACTGGAAGGCTTCAACAGCCAAGTTATGTTTTGGCCATTGTTGCAGATGTAGAGCTGAAAATTGAAAATTGGTCAAAACCAGCCTCAGTGTCAACCAAAAGAGACGAAGAGAGAGAGAGCATAGTTGAAGTTATGGGGCGGAACCGTTGACTAATTGAAAGCGGAGCGTGCAAGTTATGAAGAAACAGAAGAAAACTACTTGAAAAATAAAAACTCTCACGTCATCTGATAAGACTRAAGAGGTCGGGGAACGAGGTGTTGGGTGGTGGTGTCAAGAGGCGTCGGCCAACAAATATATTGGGGAAGCTCTCAATAGCCTATCCGTTTTTGGGGAATTTGGGCAAGAAATGAAGAAGAGCAGAAGAAGTGGGTGTGAAGAAAAGAAGAAGAATAGGGGAGGAGTATACATGGATGCTTAATTGAATGAGAATGAGGGCAGATGCCTAAAAGCGGAAAGTTCGAGGATCCAGTAGTTTCGAGAAGACGTTGAATGTTTACATTCTGTAACCAAAAGGTTACTTCTTTGTTTTTTAAAGAAATAATGCGTCGACTTCAACGAGAATCTCACTTCTCTAGAAACATAAGAATCAAATCAACAAATCCATGAGAAAATTCTCAACTTAAGTATTCAGAATGGGCGGTTTTTGAGGGAGAGATGACCGATGGACGGTGAAGTCGGCCAAGTTCTAAAGACTCCAAAAGACTCCACCCCGTATCTCCTGACCAACTCTATCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAAGTTATGAAGAAACAGAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTAAGCATCCATGTATACTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCAAGTTATGAAGAAACAGAAGAAAACTACTTGAAAAATAAAAACTCTCACGTCATCTGATAAGACTGAAGAGGTCGGGGAACGAGGTGTTGGGTGGTGGTGTCAAGAGGCGTCGGCCAACAAATATATTGGGGAAGCTCTCAATAGCCTATCCGTTTTTGGGGAATTTGGGCAAGAAATGAAGAAGAGCAGAAGAAGTGGGTGTGAAGAAAAGAAGAAGAATAGGGGAGGAGTATACATGGATGCTTAA</canonical_amplicon>
		<polymorphic_amplicon>GCAAGTTATGAAGAAACAGAAGAAAACTACTTGAAAAATAAAAACTCTCACGTCATCTGATAAGACTRAAGAGGTCGGGGAACGAGGTGTTGGGTGGTGGTGTCAAGAGGCGTCGGCCAACAAATATATTGGGGAAGCTCTCAATAGCCTATCCGTTTTTGGGGAATTTGGGCAAGAAATGAAGAAGAGCAGAAGAAGTGGGTGTGAAGAAAAGAAGAAGAATAGGGGAGGAGTATACATGGATGCTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23463</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>465308</contig_pos>
        <strand>+</strand>
        <context>GAGGTCGGGG[A/G]ACGAGGTGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAAAAATAAAAACTCTCACGTCATCTGATAAGACTGAAGAGGTCGGGG</left_flank>
        <right_flank>ACGAGGTGTTGGGTGGTGGTGTCAAGAGGCGTCGGCCAACAAATATATTG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGATAATAAGAAGCAATAAGAAGGCGTGAAAGGCATTCCACTGGAACGAGTTCTCATCCTGAAATAATCAAACAGTTTTTTCCATTAGTCTCGAACAATTTCTAAAAAGTTCCACAATTTATATTGCTTGTTTTTCTTAAATAGGAAGCCATACTGGAAATAGAATGAATCAAAAAGTCTCTCTCACCTGTGGAATCTGGTCAGTGTCATTTGAAACTGACAATAACATGTTTTGTCGTTTCGAATGGACTGGAAGGCTTCAACAGCCAAGTTATGTTTTGGCCATTGTTGCAGATGTAGAGCTGAAAATTGAAAATTGGTCAAAACCAGCCTCAGTGTCAACCAAAAGAGACGAAGAGAGAGAGAGCATAGTTGAAGTTATGGGGCGGAACCGTTGACTAATTGAAAGCGGAGCGTGCAAGTTATGAAGAAACAGAAGAAAACTACTTGAAAAATAAAAACTCTCACGTCATCTGATAAGACTGAAGAGGTCGGGGAACGAGGTGTTGGGTGGTGGTGTCAAGAGGCGTCGGCCAACAAATATATTGGGGAAGCTCTCAATAGCCTATCCGTTTTTGGGGAATTTGGGCAAGAAATGAAGAAGAGCAGAAGAAGTGGGTGTGAAGAAAAGAAGAAGAATAGGGGAGGAGTATACATGGATGCTTAATTGAATGAGAATGAGGGCAGATGCCTAAAAGCGGAAAGTTCGAGGATCCAGTAGTTTCGAGAAGACGTTGAATGTTTACATTCTGTAACCAAAAGGTTACTTCTTTGTTTTTTAAAGAAATAATGCGTCGACTTCAACGAGAATCTCACTTCTCTAGAAACATAAGAATCAAATCAACAAATCCATGAGAAAATTCTCAACTTAAGTATTCAGAATGGGCGGTTTTTGAGGGAGAGATGACCGATGGACGGTGAAGTCGGCCAAGTTCTAAAGACTCCAAAAGACTCCACCCCGTATCTCCTGACCAACTCTATCCAATTCATTCAAAAAA</canonical>
            <polymorphic>GAGGATAATAAGAAGCAATAAGAAGGCGTGAAAGGCATTCCACTGGAACGAGTTCTCATCCTGAAATAATCAAACAGTTTTTTCCATTAGTCTCGAACAATTTCTAAAAAGTTCCACAATTTATATTGCTTGTTTTTCTTAAATAGGAAGCCATACTGGAAATAGAATGAATCAAAAAGTCTCTCTCACCTGTGGAATCTGGTCAGTGTCATTTGAAACTGACAATAACATGTTTTGTCGTTTCGAATGGACTGGAAGGCTTCAACAGCCAAGTTATGTTTTGGCCATTGTTGCAGATGTAGAGCTGAAAATTGAAAATTGGTCAAAACCAGCCTCAGTGTCAACCAAAAGAGACGAAGAGAGAGAGAGCATAGTTGAAGTTATGGGGCGGAACCGTTGACTAATTGAAAGCGGAGCGTGCAAGTTATGAAGAAACAGAAGAAAACTACTTGAAAAATAAAAACTCTCACGTCATCTGATAAGACTGAAGAGGTCGGGGRACGAGGTGTTGGGTGGTGGTGTCAAGAGGCGTCGGCCAACAAATATATTGGGGAAGCTCTCAATAGCCTATCCGTTTTTGGGGAATTTGGGCAAGAAATGAAGAAGAGCAGAAGAAGTGGGTGTGAAGAAAAGAAGAAGAATAGGGGAGGAGTATACATGGATGCTTAATTGAATGAGAATGAGGGCAGATGCCTAAAAGCGGAAAGTTCGAGGATCCAGTAGTTTCGAGAAGACGTTGAATGTTTACATTCTGTAACCAAAAGGTTACTTCTTTGTTTTTTAAAGAAATAATGCGTCGACTTCAACGAGAATCTCACTTCTCTAGAAACATAAGAATCAAATCAACAAATCCATGAGAAAATTCTCAACTTAAGTATTCAGAATGGGCGGTTTTTGAGGGAGAGATGACCGATGGACGGTGAAGTCGGCCAAGTTCTAAAGACTCCAAAAGACTCCACCCCGTATCTCCTGACCAACTCTATCCAATTCATTCAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAAGTTATGAAGAAACAGAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTAAGCATCCATGTATACTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCAAGTTATGAAGAAACAGAAGAAAACTACTTGAAAAATAAAAACTCTCACGTCATCTGATAAGACTGAAGAGGTCGGGGAACGAGGTGTTGGGTGGTGGTGTCAAGAGGCGTCGGCCAACAAATATATTGGGGAAGCTCTCAATAGCCTATCCGTTTTTGGGGAATTTGGGCAAGAAATGAAGAAGAGCAGAAGAAGTGGGTGTGAAGAAAAGAAGAAGAATAGGGGAGGAGTATACATGGATGCTTAA</canonical_amplicon>
		<polymorphic_amplicon>GCAAGTTATGAAGAAACAGAAGAAAACTACTTGAAAAATAAAAACTCTCACGTCATCTGATAAGACTGAAGAGGTCGGGGRACGAGGTGTTGGGTGGTGGTGTCAAGAGGCGTCGGCCAACAAATATATTGGGGAAGCTCTCAATAGCCTATCCGTTTTTGGGGAATTTGGGCAAGAAATGAAGAAGAGCAGAAGAAGTGGGTGTGAAGAAAAGAAGAAGAATAGGGGAGGAGTATACATGGATGCTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23464</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>465344</contig_pos>
        <strand></strand>
        <context>GAGGCGTCGG[C/T]CAACAAATAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAGAGGTCGGGGAACGAGGTGTTGGGTGGTGGTGTCAAGAGGCGTCGG</left_flank>
        <right_flank>CAACAAATATATTGGGGAAGCTCTCAATAGCCTATCCGTTTTTGGGGAAT</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCCACTGGAACGAGTTCTCATCCTGAAATAATCAAACAGTTTTTTCCATTAGTCTCGAACAATTTCTAAAAAGTTCCACAATTTATATTGCTTGTTTTTCTTAAATAGGAAGCCATACTGGAAATAGAATGAATCAAAAAGTCTCTCTCACCTGTGGAATCTGGTCAGTGTCATTTGAAACTGACAATAACATGTTTTGTCGTTTCGAATGGACTGGAAGGCTTCAACAGCCAAGTTATGTTTTGGCCATTGTTGCAGATGTAGAGCTGAAAATTGAAAATTGGTCAAAACCAGCCTCAGTGTCAACCAAAAGAGACGAAGAGAGAGAGAGCATAGTTGAAGTTATGGGGCGGAACCGTTGACTAATTGAAAGCGGAGCGTGCAAGTTATGAAGAAACAGAAGAAAACTACTTGAAAAATAAAAACTCTCACGTCATCTGATAAGACTGAAGAGGTCGGGGAACGAGGTGTTGGGTGGTGGTGTCAAGAGGCGTCGGCCAACAAATATATTGGGGAAGCTCTCAATAGCCTATCCGTTTTTGGGGAATTTGGGCAAGAAATGAAGAAGAGCAGAAGAAGTGGGTGTGAAGAAAAGAAGAAGAATAGGGGAGGAGTATACATGGATGCTTAATTGAATGAGAATGAGGGCAGATGCCTAAAAGCGGAAAGTTCGAGGATCCAGTAGTTTCGAGAAGACGTTGAATGTTTACATTCTGTAACCAAAAGGTTACTTCTTTGTTTTTTAAAGAAATAATGCGTCGACTTCAACGAGAATCTCACTTCTCTAGAAACATAAGAATCAAATCAACAAATCCATGAGAAAATTCTCAACTTAAGTATTCAGAATGGGCGGTTTTTGAGGGAGAGATGACCGATGGACGGTGAAGTCGGCCAAGTTCTAAAGACTCCAAAAGACTCCACCCCGTATCTCCTGACCAACTCTATCCAATTCATTCAAAAAAAAAGTAGAAAAGAGTTGGGAAAGAAGAAAAAGAAAA</canonical>
            <polymorphic>ATTCCACTGGAACGAGTTCTCATCCTGAAATAATCAAACAGTTTTTTCCATTAGTCTCGAACAATTTCTAAAAAGTTCCACAATTTATATTGCTTGTTTTTCTTAAATAGGAAGCCATACTGGAAATAGAATGAATCAAAAAGTCTCTCTCACCTGTGGAATCTGGTCAGTGTCATTTGAAACTGACAATAACATGTTTTGTCGTTTCGAATGGACTGGAAGGCTTCAACAGCCAAGTTATGTTTTGGCCATTGTTGCAGATGTAGAGCTGAAAATTGAAAATTGGTCAAAACCAGCCTCAGTGTCAACCAAAAGAGACGAAGAGAGAGAGAGCATAGTTGAAGTTATGGGGCGGAACCGTTGACTAATTGAAAGCGGAGCGTGCAAGTTATGAAGAAACAGAAGAAAACTACTTGAAAAATAAAAACTCTCACGTCATCTGATAAGACTGAAGAGGTCGGGGAACGAGGTGTTGGGTGGTGGTGTCAAGAGGCGTCGGYCAACAAATATATTGGGGAAGCTCTCAATAGCCTATCCGTTTTTGGGGAATTTGGGCAAGAAATGAAGAAGAGCAGAAGAAGTGGGTGTGAAGAAAAGAAGAAGAATAGGGGAGGAGTATACATGGATGCTTAATTGAATGAGAATGAGGGCAGATGCCTAAAAGCGGAAAGTTCGAGGATCCAGTAGTTTCGAGAAGACGTTGAATGTTTACATTCTGTAACCAAAAGGTTACTTCTTTGTTTTTTAAAGAAATAATGCGTCGACTTCAACGAGAATCTCACTTCTCTAGAAACATAAGAATCAAATCAACAAATCCATGAGAAAATTCTCAACTTAAGTATTCAGAATGGGCGGTTTTTGAGGGAGAGATGACCGATGGACGGTGAAGTCGGCCAAGTTCTAAAGACTCCAAAAGACTCCACCCCGTATCTCCTGACCAACTCTATCCAATTCATTCAAAAAAAAAGTAGAAAAGAGTTGGGAAAGAAGAAAAAGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>394 251 248 107</canonical_bands>
                <polymorphic_bands>645 248 107</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>394 251 246 109</canonical_bands>
                <polymorphic_bands>645 246 109</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>363 203 114 109 107 28 21 20 16 10 9</canonical_bands>
                <polymorphic_bands>363 224 114 109 107 28 20 16 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAAGTTATGAAGAAACAGAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTAAGCATCCATGTATACTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCAAGTTATGAAGAAACAGAAGAAAACTACTTGAAAAATAAAAACTCTCACGTCATCTGATAAGACTGAAGAGGTCGGGGAACGAGGTGTTGGGTGGTGGTGTCAAGAGGCGTCGGCCAACAAATATATTGGGGAAGCTCTCAATAGCCTATCCGTTTTTGGGGAATTTGGGCAAGAAATGAAGAAGAGCAGAAGAAGTGGGTGTGAAGAAAAGAAGAAGAATAGGGGAGGAGTATACATGGATGCTTAA</canonical_amplicon>
		<polymorphic_amplicon>GCAAGTTATGAAGAAACAGAAGAAAACTACTTGAAAAATAAAAACTCTCACGTCATCTGATAAGACTGAAGAGGTCGGGGAACGAGGTGTTGGGTGGTGGTGTCAAGAGGCGTCGGYCAACAAATATATTGGGGAAGCTCTCAATAGCCTATCCGTTTTTGGGGAATTTGGGCAAGAAATGAAGAAGAGCAGAAGAAGTGGGTGTGAAGAAAAGAAGAAGAATAGGGGAGGAGTATACATGGATGCTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23465</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>487513</contig_pos>
        <strand>+</strand>
        <context>TTGATTTTCG[A/C]ATTTAGCTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCTTGACATGTTTTCAAAGTTATACGTTGAAACCCATGCTTGATTTTCG</left_flank>
        <right_flank>ATTTAGCTGTCCTATTAGTTCCAACCAACTTGATTTTGTAGTCAGTGATC</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACATTACGATTTGGTTCCAGATAAGGACCATCGGTTACTGGGAATTTGATAGTGAGCCATGGTTCTATAGAAACTAATCCCATTTTTTGGTACTCTCGGATCAAATTGAAATAGGATTCAACCATTGAAACAATGTAGAGATGAAGATGTGCCCCATATCTGAAAAAAGAAAAATTGAAAAGAAATTCAGAAGAACCAACTTTTTGGAAACATGAAGCTGAACCAAGAATGTTTGCCACTGCTCTGCCGCAAATTGTGGAGATACACAAAAAATGACTGGCTTCGGAGCATTGATCACCGGTTTTTTGATTGGAACCTCTACAAGTACACCTTCCGCCTCAATCTCCAGCTTTTCCATATTGTCCAGCATATTAGATTGCGCTGTGATAAGAAGATAATCACATCTCTCAAACAGTCGGTGCTCTCTGCAAATTATTTATTCTAAAATGCTTGACATGTTTTCAAAGTTATACGTTGAAACCCATGCTTGATTTTCGAATTTAGCTGTCCTATTAGTTCCAACCAACTTGATTTTGTAGTCAGTGATCTTTCCAACCGTCCTTTTGTTCATGGTGGTAACAAGAGCAACTGCATTTTTTCCAAGTCTGTAAAATCAAGGATAACTTCTGGAAATAGGAATATCAGACATACGATTTCGATGATGGATAGTAATATGCTGAGTGAATGAATGTATGTGTAAACTGTTTTCCATTCAGTCTTACATGCTTTATTCTGAAACTACATAAATTTTGAAATTACTACCGTAACCTTCACTCACACTTCCGGGGATGCATCCCGTACAACTGAATAGAATAGAATGAATACAGAAAGAGCAAACAGTAAGACCAATAGAACTTTGAATGAAAAACGAGGAAATCGGGGAACCATCGTGTCCTTCTTGTGTTCCAATAAAAAAGACGGTGGAAAGGAAGAAGAAGACATCCCCCGAAAAATATGGAAAAGGAAAAATAAAAAGATCCTCATCAAGATTGAAAATT</canonical>
            <polymorphic>CAACATTACGATTTGGTTCCAGATAAGGACCATCGGTTACTGGGAATTTGATAGTGAGCCATGGTTCTATAGAAACTAATCCCATTTTTTGGTACTCTCGGATCAAATTGAAATAGGATTCAACCATTGAAACAATGTAGAGATGAAGATGTGCCCCATATCTGAAAAAAGAAAAATTGAAAAGAAATTCAGAAGAACCAACTTTTTGGAAACATGAAGCTGAACCAAGAATGTTTGCCACTGCTCTGCCGCAAATTGTGGAGATACACAAAAAATGACTGGCTTCGGAGCATTGATCACCGGTTTTTTGATTGGAACCTCTACAAGTACACCTTCCGCCTCAATCTCCAGCTTTTCCATATTGTCCAGCATATTAGATTGCGCTGTGATAAGAAGATAATCACATCTCTCAAACAGTCGGTGCTCTCTGCAAATTATTTATTCTAAAATGCTTGACATGTTTTCAAAGTTATACGTTGAAACCCATGCTTGATTTTCGMATTTAGCTGTCCTATTAGTTCCAACCAACTTGATTTTGTAGTCAGTGATCTTTCCAACCGTCCTTTTGTTCATGGTGGTAACAAGAGCAACTGCATTTTTTCCAAGTCTGTAAAATCAAGGATAACTTCTGGAAATAGGAATATCAGACATACGATTTCGATGATGGATAGTAATATGCTGAGTGAATGAATGTATGTGTAAACTGTTTTCCATTCAGTCTTACATGCTTTATTCTGAAACTACATAAATTTTGAAATTACTACCGTAACCTTCACTCACACTTCCGGGGATGCATCCCGTACAACTGAATAGAATAGAATGAATACAGAAAGAGCAAACAGTAAGACCAATAGAACTTTGAATGAAAAACGAGGAAATCGGGGAACCATCGTGTCCTTCTTGTGTTCCAATAAAAAAGACGGTGGAAAGGAAGAAGAAGACATCCCCCGAAAAATATGGAAAAGGAAAAATAAAAAGATCCTCATCAAGATTGAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>314 253 248 141 44</canonical_bands>
                <polymorphic_bands>562 253 141 44</polymorphic_bands>
            </assay>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 341 161</canonical_bands>
                <polymorphic_bands>659 341</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>248 241 179 69 68 67 61 44 11 8 4</canonical_bands>
                <polymorphic_bands>315 241 179 69 68 61 44 11 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGATAATCACATCTCTCAAACA</pcr_primer_p1>
		<pcr_primer_p2>TTCCTATTTCCAGAAGTTATCCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAGATAATCACATCTCTCAAACAGTCGGTGCTCTCTGCAAATTATTTATTCTAAAATGCTTGACATGTTTTCAAAGTTATACGTTGAAACCCATGCTTGATTTTCGAATTTAGCTGTCCTATTAGTTCCAACCAACTTGATTTTGTAGTCAGTGATCTTTCCAACCGTCCTTTTGTTCATGGTGGTAACAAGAGCAACTGCATTTTTTCCAAGTCTGTAAAATCAAGGATAACTTCTGGAAATAGGAA</canonical_amplicon>
		<polymorphic_amplicon>GAAGATAATCACATCTCTCAAACAGTCGGTGCTCTCTGCAAATTATTTATTCTAAAATGCTTGACATGTTTTCAAAGTTATACGTTGAAACCCATGCTTGATTTTCGMATTTAGCTGTCCTATTAGTTCCAACCAACTTGATTTTGTAGTCAGTGATCTTTCCAACCGTCCTTTTGTTCATGGTGGTAACAAGAGCAACTGCATTTTTTCCAAGTCTGTAAAATCAAGGATAACTTCTGGAAATAGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23466</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>522310</contig_pos>
        <strand>+</strand>
        <context>CTTCTTCAGA[A/G]TTTTTTTGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGTTTCCTTTTCTTTCTCTATCGTCCAGATATCCGCTCACTTCTTCAGA</left_flank>
        <right_flank>TTTTTTTGTGAAAGTATTTATATTGCTTTGATTTTCATTAGTGTCTCCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAACTACCGTAAAACCTTTAATAGAAGGGCTCCCTAAATTTTAACTTTGAGCCAATTTTTTTAGGTTCCTGTCAAAAATATAAAAAAGTTGTCAACTGATAAATTGTTCATCATACAATCAGAAATGTTTTATCAGTTGTCATATTTTTAATAGCTTGTATAAAAAACTGAGATAATTGAGCTCAAACATGACAGCGGGGGGAGGGGGGGCTTGTATTACAGGTTTTACATAAAATTTTAGGAGACATAGTTAGGCTATGAAGGGCAAAATAACAGTTGAGAACGGCTACTGAAGTGTGGAGAACTATACATTTTATGAAATTATAAGTTATCCTTCTTAAAAAAAAGAGAAGGTTTCCTAAGGAGATTTCATCCCAGAAAAAATTCATCTCATCCAAATCCTTGAGGCGCAAATAATCCTGCAACAAACTTCACTTCCTCTCTCTATCTGTTTCCTTTTCTTTCTCTATCGTCCAGATATCCGCTCACTTCTTCAGATTTTTTTTGTGAAAGTATTTATATTGCTTTGATTTTCATTAGTGTCTCCCGCGGACGGACGCTCATTGATCATTCCATTCACAGGTTCATCGATTCCAAATAACTCTCTTTTCTTCTTCTATTTATTTCTTTCATGAAATGTGATGGGATGGGAATGTGCTCTTTCAACCTTCCAGCTACGTCAGTTGTCATGTCTCCTGTTACAATCTGCCTATCATTCGATAGAGCGCTTTCACTCTCTCAAATTTTCTTGTCGGACTCTTTTCGACTTTTCCGTTTTCTTTCTTTTTTCTTCTTTTTATCCGTTTCTGAGCCTTCTTTAAAAACACAAAAATTATCTGAGCAAAGTTTGCGTCGTCATGTCTTTTAATCTAATCCTCGCCAAATTTGATTTTTTGATTTTCACTCCGTCAGTACCAAAAGTATAACTGTCTCATGAAAATTTGAGCCAATTTTGAGTCCTGTCCATCAGACTCCGCCCTTTTTTCTCTTCTTTTTCAG</canonical>
            <polymorphic>ATAACTACCGTAAAACCTTTAATAGAAGGGCTCCCTAAATTTTAACTTTGAGCCAATTTTTTTAGGTTCCTGTCAAAAATATAAAAAAGTTGTCAACTGATAAATTGTTCATCATACAATCAGAAATGTTTTATCAGTTGTCATATTTTTAATAGCTTGTATAAAAAACTGAGATAATTGAGCTCAAACATGACAGCGGGGGGAGGGGGGGCTTGTATTACAGGTTTTACATAAAATTTTAGGAGACATAGTTAGGCTATGAAGGGCAAAATAACAGTTGAGAACGGCTACTGAAGTGTGGAGAACTATACATTTTATGAAATTATAAGTTATCCTTCTTAAAAAAAAGAGAAGGTTTCCTAAGGAGATTTCATCCCAGAAAAAATTCATCTCATCCAAATCCTTGAGGCGCAAATAATCCTGCAACAAACTTCACTTCCTCTCTCTATCTGTTTCCTTTTCTTTCTCTATCGTCCAGATATCCGCTCACTTCTTCAGARTTTTTTTGTGAAAGTATTTATATTGCTTTGATTTTCATTAGTGTCTCCCGCGGACGGACGCTCATTGATCATTCCATTCACAGGTTCATCGATTCCAAATAACTCTCTTTTCTTCTTCTATTTATTTCTTTCATGAAATGTGATGGGATGGGAATGTGCTCTTTCAACCTTCCAGCTACGTCAGTTGTCATGTCTCCTGTTACAATCTGCCTATCATTCGATAGAGCGCTTTCACTCTCTCAAATTTTCTTGTCGGACTCTTTTCGACTTTTCCGTTTTCTTTCTTTTTTCTTCTTTTTATCCGTTTCTGAGCCTTCTTTAAAAACACAAAAATTATCTGAGCAAAGTTTGCGTCGTCATGTCTTTTAATCTAATCCTCGCCAAATTTGATTTTTTGATTTTCACTCCGTCAGTACCAAAAGTATAACTGTCTCATGAAAATTTGAGCCAATTTTGAGTCCTGTCCATCAGACTCCGCCCTTTTTTCTCTTCTTTTTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATCTGTTTCCTTTTCTTTCTC</pcr_primer_p1>
		<pcr_primer_p2>AGACATGACAACTGACGTAGC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTATCTGTTTCCTTTTCTTTCTCTATCGTCCAGATATCCGCTCACTTCTTCAGATTTTTTTTGTGAAAGTATTTATATTGCTTTGATTTTCATTAGTGTCTCCCGCGGACGGACGCTCATTGATCATTCCATTCACAGGTTCATCGATTCCAAATAACTCTCTTTTCTTCTTCTATTTATTTCTTTCATGAAATGTGATGGGATGGGAATGTGCTCTTTCAACCTTCCAGCTACGTCAGTTGTCATGTCT</canonical_amplicon>
		<polymorphic_amplicon>TCTATCTGTTTCCTTTTCTTTCTCTATCGTCCAGATATCCGCTCACTTCTTCAGARTTTTTTTGTGAAAGTATTTATATTGCTTTGATTTTCATTAGTGTCTCCCGCGGACGGACGCTCATTGATCATTCCATTCACAGGTTCATCGATTCCAAATAACTCTCTTTTCTTCTTCTATTTATTTCTTTCATGAAATGTGATGGGATGGGAATGTGCTCTTTCAACCTTCCAGCTACGTCAGTTGTCATGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23467</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>565138</contig_pos>
        <strand>+</strand>
        <context>TATATCGATA[C/T]TCGAACTCGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAACTTGATTTTTATCCACTAATGTAGAATTTCCAGGAATATATCGATA</left_flank>
        <right_flank>TCGAACTCGAAAATTGGAGTTTTCGGATCTCCATACTTCACAATTACAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGTGTAAGTCGGAGCTAAGCACCCAACTGCGTGGTGTTATCAATTCCTGACCAACGGTTGCCTGTCGATTAGTAGACGGAAATTTTAAAGAGAAAGGAAGAAGAAAGAAAAAGAAGCAAAAGAATAAATGAAGGATAGTGAGCAGTTGATAAGCTGATATTCAAATAGAACCACTCACCAAAACAACTCATCGACATGATTCGACAATTAGAACAGGAACAAATAGAAATGTACACCACATGTGGAATGAAAATAATAGGCGAGGAGATCAAAACATTTTGAACTTTTTTGGTCACGAATCAGTTTCAAAAAGGAAGATAATCCAGATTTGCCTGTAGTTGTATGATTGTTTTCCATTTTAAAAAAAGGACAGGTTTTGTTTTTTTTTTTTTCACTTGCTAAAGAATAATACAATGAACACTTTATTTAACATTTTATTTCAGATGTCAAACTTGATTTTTATCCACTAATGTAGAATTTCCAGGAATATATCGATACTCGAACTCGAAAATTGGAGTTTTCGGATCTCCATACTTCACAATTACAAACGGAATATTTGTGGAAGATCGTGTTTTGTTCCACAGGTTGTCATTATCACAGCATACCAATGGGCTGACAATTCTTCGGTCCGTTTTGTATTTCAATTCAACTCCATTATTATCACAGAAATCATGACAATGAAATCCGTAAAGCTTTGTGATTCTGACCTCGATTGTTGAACCTTCCGGGGCCTAAAGTATAGATATTTTCTGCTGAAATATGTATATTAGTTTTACCATGATGAGAACTTTGCTATATTGTGGCATAGTGTTAATGTGTATTCCTTTTAAATTTATAGTTTTAATGTAACTGGCTTGCCATTCTGTTGACGCATTGAAAACAGTTCCATCTGGTTGATCGCACAATTGTCCCTTGAAACCATCAGTACAGAGACACTCATTACAATTTGCTGGATTTTGATATCCCCCATTTTTACAATCAAGTTTTTCTGGATGATT</canonical>
            <polymorphic>CATGTGTAAGTCGGAGCTAAGCACCCAACTGCGTGGTGTTATCAATTCCTGACCAACGGTTGCCTGTCGATTAGTAGACGGAAATTTTAAAGAGAAAGGAAGAAGAAAGAAAAAGAAGCAAAAGAATAAATGAAGGATAGTGAGCAGTTGATAAGCTGATATTCAAATAGAACCACTCACCAAAACAACTCATCGACATGATTCGACAATTAGAACAGGAACAAATAGAAATGTACACCACATGTGGAATGAAAATAATAGGCGAGGAGATCAAAACATTTTGAACTTTTTTGGTCACGAATCAGTTTCAAAAAGGAAGATAATCCAGATTTGCCTGTAGTTGTATGATTGTTTTCCATTTTAAAAAAAGGACAGGTTTTGTTTTTTTTTTTTTCACTTGCTAAAGAATAATACAATGAACACTTTATTTAACATTTTATTTCAGATGTCAAACTTGATTTTTATCCACTAATGTAGAATTTCCAGGAATATATCGATAYTCGAACTCGAAAATTGGAGTTTTCGGATCTCCATACTTCACAATTACAAACGGAATATTTGTGGAAGATCGTGTTTTGTTCCACAGGTTGTCATTATCACAGCATACCAATGGGCTGACAATTCTTCGGTCCGTTTTGTATTTCAATTCAACTCCATTATTATCACAGAAATCATGACAATGAAATCCGTAAAGCTTTGTGATTCTGACCTCGATTGTTGAACCTTCCGGGGCCTAAAGTATAGATATTTTCTGCTGAAATATGTATATTAGTTTTACCATGATGAGAACTTTGCTATATTGTGGCATAGTGTTAATGTGTATTCCTTTTAAATTTATAGTTTTAATGTAACTGGCTTGCCATTCTGTTGACGCATTGAAAACAGTTCCATCTGGTTGATCGCACAATTGTCCCTTGAAACCATCAGTACAGAGACACTCATTACAATTTGCTGGATTTTGATATCCCCCATTTTTACAATCAAGTTTTTCTGGATGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTTCAGATGTCAAACTTGATT</pcr_primer_p1>
		<pcr_primer_p2>GATTTCATTGTCATGATTTCTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTATTTCAGATGTCAAACTTGATTTTTATCCACTAATGTAGAATTTCCAGGAATATATCGATACTCGAACTCGAAAATTGGAGTTTTCGGATCTCCATACTTCACAATTACAAACGGAATATTTGTGGAAGATCGTGTTTTGTTCCACAGGTTGTCATTATCACAGCATACCAATGGGCTGACAATTCTTCGGTCCGTTTTGTATTTCAATTCAACTCCATTATTATCACAGAAATCATGACAATGAAATC</canonical_amplicon>
		<polymorphic_amplicon>TTATTTCAGATGTCAAACTTGATTTTTATCCACTAATGTAGAATTTCCAGGAATATATCGATAYTCGAACTCGAAAATTGGAGTTTTCGGATCTCCATACTTCACAATTACAAACGGAATATTTGTGGAAGATCGTGTTTTGTTCCACAGGTTGTCATTATCACAGCATACCAATGGGCTGACAATTCTTCGGTCCGTTTTGTATTTCAATTCAACTCCATTATTATCACAGAAATCATGACAATGAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23468</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>590702</contig_pos>
        <strand>+</strand>
        <context>TGATTTTTTT[A/T]AATTCCTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTAACCTGAGCAAGTTTGTCATAAAGAGAAAGATTAAAGTGATTTTTTT</left_flank>
        <right_flank>AATTCCTTGTCTTTGAAGCTTTGTATTTCGCTTAAAATATCTATTTAAAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATTGGTATCAAGAGTGTTGCGAATTGGGATGCTGTCTGAACAGTCTCATACAAATCGGCATTCTGATGTGAGGAACACAGATGTATTAAAGTATTGAAGTACAATTTTCAGTTTGCTCTACACTGGAATTGCTTTCATGGCTGTCATATTCTGCGCCCAGTTAACACTCCGGTCGAACGACCAAAGAGGAGAATTCCGGTCTCCTCCGAATGTCAGACGCCACTATCCATGCCGTAGAGCCGCTGCAGAACGAACAGTGGAGAGCTACGTTCTCCAAGAGCTCGCCATCAGAGAAGCACCGCCAGCGTACGAGGAATTGTATCCGAACGGAAGTCCGTATGAAGAAGCTGGCCCGAGCACGAGCAACACAATTCCACGGATTGTTGTGAATGCGGTAGAGGATTCCGAGAACACTGATACCAATTAAATTATTATTTTTTATTCTGTTTTAACCTGAGCAAGTTTGTCATAAAGAGAAAGATTAAAGTGATTTTTTTTAATTCCTTGTCTTTGAAGCTTTGTATTTCGCTTAAAATATCTATTTAAACTATACCCTTTTTTCGATTGACCTGTTTTTAAGGGTGAGCTGATGGCATTGCATTTCATATTTATCCTTTTGTTGAACTTCCTGAGAAATGGTCAATCAGCAGCAAGCTGCTGCGATCGTTCAAGGTGAGTGCCTATCAAAGCTTGCTCATTTTCATCATTTTCAGATCTGGGTACGTGGAATTCAGATCTCTAACTGAGTTTCTCCGTAAAACAGACGTAATCGAAAAACACTTCAACTACAACAACCAGACGGATGTGTTCTACATCAATCACGACGCTACAATTCTGTATAACTCAATCCACTATTCTTTCGATGACTTCTATGAACAACATGAGAACAGAACCAAAGTTTGCCTGTTTAAACTCTACAGACGCTACGATGAGATTGAACATGTGAGCCAACAACAAAAAATCGTATTCCAAGACATGTTTTTTTCTCGTTCGTAGGT</canonical>
            <polymorphic>CAATTGGTATCAAGAGTGTTGCGAATTGGGATGCTGTCTGAACAGTCTCATACAAATCGGCATTCTGATGTGAGGAACACAGATGTATTAAAGTATTGAAGTACAATTTTCAGTTTGCTCTACACTGGAATTGCTTTCATGGCTGTCATATTCTGCGCCCAGTTAACACTCCGGTCGAACGACCAAAGAGGAGAATTCCGGTCTCCTCCGAATGTCAGACGCCACTATCCATGCCGTAGAGCCGCTGCAGAACGAACAGTGGAGAGCTACGTTCTCCAAGAGCTCGCCATCAGAGAAGCACCGCCAGCGTACGAGGAATTGTATCCGAACGGAAGTCCGTATGAAGAAGCTGGCCCGAGCACGAGCAACACAATTCCACGGATTGTTGTGAATGCGGTAGAGGATTCCGAGAACACTGATACCAATTAAATTATTATTTTTTATTCTGTTTTAACCTGAGCAAGTTTGTCATAAAGAGAAAGATTAAAGTGATTTTTTTWAATTCCTTGTCTTTGAAGCTTTGTATTTCGCTTAAAATATCTATTTAAACTATACCCTTTTTTCGATTGACCTGTTTTTAAGGGTGAGCTGATGGCATTGCATTTCATATTTATCCTTTTGTTGAACTTCCTGAGAAATGGTCAATCAGCAGCAAGCTGCTGCGATCGTTCAAGGTGAGTGCCTATCAAAGCTTGCTCATTTTCATCATTTTCAGATCTGGGTACGTGGAATTCAGATCTCTAACTGAGTTTCTCCGTAAAACAGACGTAATCGAAAAACACTTCAACTACAACAACCAGACGGATGTGTTCTACATCAATCACGACGCTACAATTCTGTATAACTCAATCCACTATTCTTTCGATGACTTCTATGAACAACATGAGAACAGAACCAAAGTTTGCCTGTTTAAACTCTACAGACGCTACGATGAGATTGAACATGTGAGCCAACAACAAAAAATCGTATTCCAAGACATGTTTTTTTCTCGTTCGTAGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>332 263 90 88 75 33 33 33 25 15 13</canonical_bands>
                <polymorphic_bands>332 263 90 88 75 48 33 33 25 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTAACCTGAGCAAGTTTGT</pcr_primer_p1>
		<pcr_primer_p2>AAGCTTTGATAGGCACTCAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTTTTAACCTGAGCAAGTTTGTCATAAAGAGAAAGATTAAAGTGATTTTTTTTAATTCCTTGTCTTTGAAGCTTTGTATTTCGCTTAAAATATCTATTTAAACTATACCCTTTTTTCGATTGACCTGTTTTTAAGGGTGAGCTGATGGCATTGCATTTCATATTTATCCTTTTGTTGAACTTCCTGAGAAATGGTCAATCAGCAGCAAGCTGCTGCGATCGTTCAAGGTGAGTGCCTATCAAAGCTT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTAACCTGAGCAAGTTTGTCATAAAGAGAAAGATTAAAGTGATTTTTTTWAATTCCTTGTCTTTGAAGCTTTGTATTTCGCTTAAAATATCTATTTAAACTATACCCTTTTTTCGATTGACCTGTTTTTAAGGGTGAGCTGATGGCATTGCATTTCATATTTATCCTTTTGTTGAACTTCCTGAGAAATGGTCAATCAGCAGCAAGCTGCTGCGATCGTTCAAGGTGAGTGCCTATCAAAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23469</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>740719</contig_pos>
        <strand></strand>
        <context>GCGTTCCGTA[G/C]ATCCTTCTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TGGAATTCGTCGTGTCGATAAATTGGAAGAAGTCGAAGAAGCGTTCCGTA</left_flank>
        <right_flank>ATCCTTCTCGGAAGCTCAAGCTGCTTTCGGTGACGGAAGTTTGTTCGTGG</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGCGGAACAGGATAAAAATTCGATTCACCGTCTCAAAGCTGATGAATCGTACCTCGTTGGAAAGGGACTCCCACCGGTTGCTGCCTATCTGACGATTGATCAGATCATAGAGACAGCTCTCAAGGTTTTTTTTAAATAAAAAAGCGTGTGTAACTTTTTCTTTTCAGCACGACATCGATGCCATTCACCCCGGATATGGATTCCTGTCAGAGCGCTCTGATTTTGCTGCTGCGTGCCAAAATGCGGGTATCGTTTTCATTGGACCTAGTCCCGACGTGATGGCTAGAATGGGAGATAAAGTCGCTGCTCGTCAAGCTGCTATCGAGGCCGGCGTACAAGTAGTTCCAGGAACTCCAGGACCAATCACAACAGCAGATGAAGCTGTTGAGTTTGCCAAGCAATACGGTACACCAATCATTCTGAAAGCCGCATACGGAGGAGGAGGACGTGGAATTCGTCGTGTCGATAAATTGGAAGAAGTCGAAGAAGCGTTCCGTAGATCCTTCTCGGAAGCTCAAGCTGCTTTCGGTGACGGAAGTTTGTTCGTGGAGAAGTTCGTTGAGAGACCAAGACACATTGAAGTCCAATTGCTTGGTTAGTGCATGACCTATAAAAACCATCAATGTCATAATTTCAGGAGATCACCACGGTAACATTGTCCATCTCTATGAGCGTGACTGCTCCGTTCAACGTCGTCATCAGAAAGTCGTCGAAATTGCTCCAGCTCCAGCCCTTCCAGAAGGTGTTCGTGAGAAGATTCTTGCTGATGCTCTCCGTCTTGCCAAACATGTTGGATATCAAAATGCTGGAACTGTTGAGTTCCTTGTCGATCAAAAAGGCAACTACTATTTCATCGAAGTCAACGCTCGTCTTCAAGTCGAGCATACTGTCACTGAGGAGATCACTGGTGTTGACCTGGTTCAAGCTCAAATTCGTATTGCTGAGGAAAATCGTTGGAAGATCTCAAGTTGTCTCAAGATACGATTCACACAACTGGCT</canonical>
            <polymorphic>ATGCGGAACAGGATAAAAATTCGATTCACCGTCTCAAAGCTGATGAATCGTACCTCGTTGGAAAGGGACTCCCACCGGTTGCTGCCTATCTGACGATTGATCAGATCATAGAGACAGCTCTCAAGGTTTTTTTTAAATAAAAAAGCGTGTGTAACTTTTTCTTTTCAGCACGACATCGATGCCATTCACCCCGGATATGGATTCCTGTCAGAGCGCTCTGATTTTGCTGCTGCGTGCCAAAATGCGGGTATCGTTTTCATTGGACCTAGTCCCGACGTGATGGCTAGAATGGGAGATAAAGTCGCTGCTCGTCAAGCTGCTATCGAGGCCGGCGTACAAGTAGTTCCAGGAACTCCAGGACCAATCACAACAGCAGATGAAGCTGTTGAGTTTGCCAAGCAATACGGTACACCAATCATTCTGAAAGCCGCATACGGAGGAGGAGGACGTGGAATTCGTCGTGTCGATAAATTGGAAGAAGTCGAAGAAGCGTTCCGTASATCCTTCTCGGAAGCTCAAGCTGCTTTCGGTGACGGAAGTTTGTTCGTGGAGAAGTTCGTTGAGAGACCAAGACACATTGAAGTCCAATTGCTTGGTTAGTGCATGACCTATAAAAACCATCAATGTCATAATTTCAGGAGATCACCACGGTAACATTGTCCATCTCTATGAGCGTGACTGCTCCGTTCAACGTCGTCATCAGAAAGTCGTCGAAATTGCTCCAGCTCCAGCCCTTCCAGAAGGTGTTCGTGAGAAGATTCTTGCTGATGCTCTCCGTCTTGCCAAACATGTTGGATATCAAAATGCTGGAACTGTTGAGTTCCTTGTCGATCAAAAAGGCAACTACTATTTCATCGAAGTCAACGCTCGTCTTCAAGTCGAGCATACTGTCACTGAGGAGATCACTGGTGTTGACCTGGTTCAAGCTCAAATTCGTATTGCTGAGGAAAATCGTTGGAAGATCTCAAGTTGTCTCAAGATACGATTCACACAACTGGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>396 189 141 98 71 60 40 5</canonical_bands>
                <polymorphic_bands>537 189 98 71 60 40 5</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>499 461 40</canonical_bands>
                <polymorphic_bands>960 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATACGGTACACCAATCATTCT</pcr_primer_p1>
		<pcr_primer_p2>TGATCTCCTGAAATTATGACATT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATACGGTACACCAATCATTCTGAAAGCCGCATACGGAGGAGGAGGACGTGGAATTCGTCGTGTCGATAAATTGGAAGAAGTCGAAGAAGCGTTCCGTAGATCCTTCTCGGAAGCTCAAGCTGCTTTCGGTGACGGAAGTTTGTTCGTGGAGAAGTTCGTTGAGAGACCAAGACACATTGAAGTCCAATTGCTTGGTTAGTGCATGACCTATAAAAACCATCAATGTCATAATTTCAGGAGATCA</canonical_amplicon>
		<polymorphic_amplicon>AATACGGTACACCAATCATTCTGAAAGCCGCATACGGAGGAGGAGGACGTGGAATTCGTCGTGTCGATAAATTGGAAGAAGTCGAAGAAGCGTTCCGTASATCCTTCTCGGAAGCTCAAGCTGCTTTCGGTGACGGAAGTTTGTTCGTGGAGAAGTTCGTTGAGAGACCAAGACACATTGAAGTCCAATTGCTTGGTTAGTGCATGACCTATAAAAACCATCAATGTCATAATTTCAGGAGATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23470</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>740970</contig_pos>
        <strand>+</strand>
        <context>AAGGTGTTCG[A/T]GAGAAGATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGAAAGTCGTCGAAATTGCTCCAGCTCCAGCCCTTCCAGAAGGTGTTCG</left_flank>
        <right_flank>GAGAAGATTCTTGCTGATGCTCTCCGTCTTGCCAAACATGTTGGATATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTTTCATTGGACCTAGTCCCGACGTGATGGCTAGAATGGGAGATAAAGTCGCTGCTCGTCAAGCTGCTATCGAGGCCGGCGTACAAGTAGTTCCAGGAACTCCAGGACCAATCACAACAGCAGATGAAGCTGTTGAGTTTGCCAAGCAATACGGTACACCAATCATTCTGAAAGCCGCATACGGAGGAGGAGGACGTGGAATTCGTCGTGTCGATAAATTGGAAGAAGTCGAAGAAGCGTTCCGTAGATCCTTCTCGGAAGCTCAAGCTGCTTTCGGTGACGGAAGTTTGTTCGTGGAGAAGTTCGTTGAGAGACCAAGACACATTGAAGTCCAATTGCTTGGTTAGTGCATGACCTATAAAAACCATCAATGTCATAATTTCAGGAGATCACCACGGTAACATTGTCCATCTCTATGAGCGTGACTGCTCCGTTCAACGTCGTCATCAGAAAGTCGTCGAAATTGCTCCAGCTCCAGCCCTTCCAGAAGGTGTTCGTGAGAAGATTCTTGCTGATGCTCTCCGTCTTGCCAAACATGTTGGATATCAAAATGCTGGAACTGTTGAGTTCCTTGTCGATCAAAAAGGCAACTACTATTTCATCGAAGTCAACGCTCGTCTTCAAGTCGAGCATACTGTCACTGAGGAGATCACTGGTGTTGACCTGGTTCAAGCTCAAATTCGTATTGCTGAGGAAAATCGTTGGAAGATCTCAAGTTGTCTCAAGATACGATTCACACAACTGGCTCTGCTATTCAGTGCAGAGTAACTACTGAGGACCCAGCTAAAGGATTCCAACCAGATTCTGGAAGAATCGAAGTGTTCAGATCTGGAGAAGGAATGGGAATCCGTCTTGATTCTGCATCAGCCTTCGCTGGATCCGTCATCTCACCACACTACGATTCGTTGATGGTGAAAGTGATCGCATCAGCCAGAAATCATCCGAACGCCGCTGCTAAAATGATTCGTGCTTTGAAAGAGTTCCGTATCAGAGGAGTC</canonical>
            <polymorphic>CGTTTTCATTGGACCTAGTCCCGACGTGATGGCTAGAATGGGAGATAAAGTCGCTGCTCGTCAAGCTGCTATCGAGGCCGGCGTACAAGTAGTTCCAGGAACTCCAGGACCAATCACAACAGCAGATGAAGCTGTTGAGTTTGCCAAGCAATACGGTACACCAATCATTCTGAAAGCCGCATACGGAGGAGGAGGACGTGGAATTCGTCGTGTCGATAAATTGGAAGAAGTCGAAGAAGCGTTCCGTAGATCCTTCTCGGAAGCTCAAGCTGCTTTCGGTGACGGAAGTTTGTTCGTGGAGAAGTTCGTTGAGAGACCAAGACACATTGAAGTCCAATTGCTTGGTTAGTGCATGACCTATAAAAACCATCAATGTCATAATTTCAGGAGATCACCACGGTAACATTGTCCATCTCTATGAGCGTGACTGCTCCGTTCAACGTCGTCATCAGAAAGTCGTCGAAATTGCTCCAGCTCCAGCCCTTCCAGAAGGTGTTCGWGAGAAGATTCTTGCTGATGCTCTCCGTCTTGCCAAACATGTTGGATATCAAAATGCTGGAACTGTTGAGTTCCTTGTCGATCAAAAAGGCAACTACTATTTCATCGAAGTCAACGCTCGTCTTCAAGTCGAGCATACTGTCACTGAGGAGATCACTGGTGTTGACCTGGTTCAAGCTCAAATTCGTATTGCTGAGGAAAATCGTTGGAAGATCTCAAGTTGTCTCAAGATACGATTCACACAACTGGCTCTGCTATTCAGTGCAGAGTAACTACTGAGGACCCAGCTAAAGGATTCCAACCAGATTCTGGAAGAATCGAAGTGTTCAGATCTGGAGAAGGAATGGGAATCCGTCTTGATTCTGCATCAGCCTTCGCTGGATCCGTCATCTCACCACACTACGATTCGTTGATGGTGAAAGTGATCGCATCAGCCAGAAATCATCCGAACGCCGCTGCTAAAATGATTCGTGCTTTGAAAGAGTTCCGTATCAGAGGAGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>141 88 78 69 69 69 61 49 44 43 40 29 29 28 27 26 22 19 17 12 12 6 6 6 3 3 2 2</canonical_bands>
                <polymorphic_bands>147 88 78 69 69 69 61 49 44 43 40 29 29 28 27 26 22 19 17 12 12 6 6 3 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGACCTATAAAAACCATCAATGT</pcr_primer_p1>
		<pcr_primer_p2>TGAAATAGTAGTTGCCTTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGACCTATAAAAACCATCAATGTCATAATTTCAGGAGATCACCACGGTAACATTGTCCATCTCTATGAGCGTGACTGCTCCGTTCAACGTCGTCATCAGAAAGTCGTCGAAATTGCTCCAGCTCCAGCCCTTCCAGAAGGTGTTCGTGAGAAGATTCTTGCTGATGCTCTCCGTCTTGCCAAACATGTTGGATATCAAAATGCTGGAACTGTTGAGTTCCTTGTCGATCAAAAAGGCAACTACTATTTCA</canonical_amplicon>
		<polymorphic_amplicon>TGACCTATAAAAACCATCAATGTCATAATTTCAGGAGATCACCACGGTAACATTGTCCATCTCTATGAGCGTGACTGCTCCGTTCAACGTCGTCATCAGAAAGTCGTCGAAATTGCTCCAGCTCCAGCCCTTCCAGAAGGTGTTCGWGAGAAGATTCTTGCTGATGCTCTCCGTCTTGCCAAACATGTTGGATATCAAAATGCTGGAACTGTTGAGTTCCTTGTCGATCAAAAAGGCAACTACTATTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23471</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>744714</contig_pos>
        <strand>+</strand>
        <context>CAATTGAATT[C/T]TAGATCAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCAACAAGAGCCTTTTTTGTCCACTTCATCCGCAAATTCCAATTGAATT</left_flank>
        <right_flank>TAGATCAAAAACTTTCAAAGTTGGGAAGCATGTGGAGCTGTCTGTCCATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCTCTCGAATTCTTCTCCCACCCACTTTTTTCTTATCCACAATTCCATCACTATATTTGCCGTCTGTTCTATAGAATGACCCTTTCTAATCTTGTCGACCTACTTAATGTGTATATTCTGTGTATTGCATTTTTTTTCGATTTGTCTCTGCGTGTCTTTTCGTTTGCTCATTTTTGCCTTTTTCTCCACTTCTGCATTTAAATAATTTTCTAAGAAAATGTATTTATTGCATCGGGTGCTCATTGTCTCTGTGTAGAATATAAACTCATTCACTTCTCTCCCCTTTCTTTCTCTTTTCCATCTCACATCCAATTCTCATCACACACTGACTTTTACTTCTTGGCCCACCACTGGTAATTGGTGGGTTGAGTTTCTTTTTCCCCTCAGATTTTATGGCTTTTTTTGGAGTTGCGTGCTCACGCAAAGAGCCCGCCCACTCCGGAAGCCAGCCAACAAGAGCCTTTTTTGTCCACTTCATCCGCAAATTCCAATTGAATTCTAGATCAAAAACTTTCAAAGTTGGGAAGCATGTGGAGCTGTCTGTCCATTCAGCAGGTCATTGCATTTCTTTTCAGGTAAGTTGGGCAATCTTTACAAAAATGAGGATTACTGTAGGTAAGCATAAAGAAAGTATTTTTAATTTATGTGTTAACTATAATTACTGTTTTCTGAAAATCATGGTATTATTGCGAGGGAGGAGCATAACAAAATTAAACTTCTGGTTTTCGAGTTACCAAGAATAATCAAATTCAAGAAGTAAGATTTCAGATCGACTATTTAAAAAGTTCCGTTTGATCTTTATGAAATGGCCAAAAAATTGGCTTTGGTTTGGATGGGCCATGTCAATCTCTAATGAAAGCCCACTCAGGCTCAATTATCTCGATTCCAATTTGAGCTCAATTATCTCGATTCCTGTGAGAGATATCGAAAAGTTGTCAACTGATAAAACGTTCATCATATTGTCGTAAAGATTTCAGTTGACCACTTTTTTAGATCTTT</canonical>
            <polymorphic>TGCTCTCGAATTCTTCTCCCACCCACTTTTTTCTTATCCACAATTCCATCACTATATTTGCCGTCTGTTCTATAGAATGACCCTTTCTAATCTTGTCGACCTACTTAATGTGTATATTCTGTGTATTGCATTTTTTTTCGATTTGTCTCTGCGTGTCTTTTCGTTTGCTCATTTTTGCCTTTTTCTCCACTTCTGCATTTAAATAATTTTCTAAGAAAATGTATTTATTGCATCGGGTGCTCATTGTCTCTGTGTAGAATATAAACTCATTCACTTCTCTCCCCTTTCTTTCTCTTTTCCATCTCACATCCAATTCTCATCACACACTGACTTTTACTTCTTGGCCCACCACTGGTAATTGGTGGGTTGAGTTTCTTTTTCCCCTCAGATTTTATGGCTTTTTTTGGAGTTGCGTGCTCACGCAAAGAGCCCGCCCACTCCGGAAGCCAGCCAACAAGAGCCTTTTTTGTCCACTTCATCCGCAAATTCCAATTGAATTYTAGATCAAAAACTTTCAAAGTTGGGAAGCATGTGGAGCTGTCTGTCCATTCAGCAGGTCATTGCATTTCTTTTCAGGTAAGTTGGGCAATCTTTACAAAAATGAGGATTACTGTAGGTAAGCATAAAGAAAGTATTTTTAATTTATGTGTTAACTATAATTACTGTTTTCTGAAAATCATGGTATTATTGCGAGGGAGGAGCATAACAAAATTAAACTTCTGGTTTTCGAGTTACCAAGAATAATCAAATTCAAGAAGTAAGATTTCAGATCGACTATTTAAAAAGTTCCGTTTGATCTTTATGAAATGGCCAAAAAATTGGCTTTGGTTTGGATGGGCCATGTCAATCTCTAATGAAAGCCCACTCAGGCTCAATTATCTCGATTCCAATTTGAGCTCAATTATCTCGATTCCTGTGAGAGATATCGAAAAGTTGTCAACTGATAAAACGTTCATCATATTGTCGTAAAGATTTCAGTTGACCACTTTTTTAGATCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>476 253 252 11 8</canonical_bands>
                <polymorphic_bands>476 263 253 8</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>505 487 8</canonical_bands>
                <polymorphic_bands>992 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>435 252 128 94 60 26 5</canonical_bands>
                <polymorphic_bands>435 312 128 94 26 5</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTTCCCCTCAGATTTTAT</pcr_primer_p1>
		<pcr_primer_p2>TGCTTACCTACAGTAATCCTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTTCCCCTCAGATTTTATGGCTTTTTTTGGAGTTGCGTGCTCACGCAAAGAGCCCGCCCACTCCGGAAGCCAGCCAACAAGAGCCTTTTTTGTCCACTTCATCCGCAAATTCCAATTGAATTCTAGATCAAAAACTTTCAAAGTTGGGAAGCATGTGGAGCTGTCTGTCCATTCAGCAGGTCATTGCATTTCTTTTCAGGTAAGTTGGGCAATCTTTACAAAAATGAGGATTACTGTAGGTAAGCA</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTTCCCCTCAGATTTTATGGCTTTTTTTGGAGTTGCGTGCTCACGCAAAGAGCCCGCCCACTCCGGAAGCCAGCCAACAAGAGCCTTTTTTGTCCACTTCATCCGCAAATTCCAATTGAATTYTAGATCAAAAACTTTCAAAGTTGGGAAGCATGTGGAGCTGTCTGTCCATTCAGCAGGTCATTGCATTTCTTTTCAGGTAAGTTGGGCAATCTTTACAAAAATGAGGATTACTGTAGGTAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23472</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>744978</contig_pos>
        <strand>+</strand>
        <context>AGAAGTAAGA[G/T]TTCAGATCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAACTTCTGGTTTTCGAGTTACCAAGAATAATCAAATTCAAGAAGTAAGA</left_flank>
        <right_flank>TTCAGATCGACTATTTAAAAAGTTCCGTTTGATCTTTATGAAATGGCCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCATTCACTTCTCTCCCCTTTCTTTCTCTTTTCCATCTCACATCCAATTCTCATCACACACTGACTTTTACTTCTTGGCCCACCACTGGTAATTGGTGGGTTGAGTTTCTTTTTCCCCTCAGATTTTATGGCTTTTTTTGGAGTTGCGTGCTCACGCAAAGAGCCCGCCCACTCCGGAAGCCAGCCAACAAGAGCCTTTTTTGTCCACTTCATCCGCAAATTCCAATTGAATTCTAGATCAAAAACTTTCAAAGTTGGGAAGCATGTGGAGCTGTCTGTCCATTCAGCAGGTCATTGCATTTCTTTTCAGGTAAGTTGGGCAATCTTTACAAAAATGAGGATTACTGTAGGTAAGCATAAAGAAAGTATTTTTAATTTATGTGTTAACTATAATTACTGTTTTCTGAAAATCATGGTATTATTGCGAGGGAGGAGCATAACAAAATTAAACTTCTGGTTTTCGAGTTACCAAGAATAATCAAATTCAAGAAGTAAGATTTCAGATCGACTATTTAAAAAGTTCCGTTTGATCTTTATGAAATGGCCAAAAAATTGGCTTTGGTTTGGATGGGCCATGTCAATCTCTAATGAAAGCCCACTCAGGCTCAATTATCTCGATTCCAATTTGAGCTCAATTATCTCGATTCCTGTGAGAGATATCGAAAAGTTGTCAACTGATAAAACGTTCATCATATTGTCGTAAAGATTTCAGTTGACCACTTTTTTAGATCTTTCACAAGAATCGAGATAATTGAGTTCAAAGTTGTCGGCTAGGGTAGACTTCTATTAGCGGGAATACGGTATTTCACGCATTTCGACTCTTCCTATTTAGGTGCCGTAAAACCTGCATTAGAAGGGCCTCTTTAATGAATGAGCACCTCAAAATTCGTTGGTTGAAATTAAACAGTACTTTTCAGGGAAAAAATACAGAAATTCTAAAATTTTGTTGAAACACTTTTTTTGCTCAAAAATTGCTCGATTTTGAGGAAATTGATACA</canonical>
            <polymorphic>ACTCATTCACTTCTCTCCCCTTTCTTTCTCTTTTCCATCTCACATCCAATTCTCATCACACACTGACTTTTACTTCTTGGCCCACCACTGGTAATTGGTGGGTTGAGTTTCTTTTTCCCCTCAGATTTTATGGCTTTTTTTGGAGTTGCGTGCTCACGCAAAGAGCCCGCCCACTCCGGAAGCCAGCCAACAAGAGCCTTTTTTGTCCACTTCATCCGCAAATTCCAATTGAATTCTAGATCAAAAACTTTCAAAGTTGGGAAGCATGTGGAGCTGTCTGTCCATTCAGCAGGTCATTGCATTTCTTTTCAGGTAAGTTGGGCAATCTTTACAAAAATGAGGATTACTGTAGGTAAGCATAAAGAAAGTATTTTTAATTTATGTGTTAACTATAATTACTGTTTTCTGAAAATCATGGTATTATTGCGAGGGAGGAGCATAACAAAATTAAACTTCTGGTTTTCGAGTTACCAAGAATAATCAAATTCAAGAAGTAAGAKTTCAGATCGACTATTTAAAAAGTTCCGTTTGATCTTTATGAAATGGCCAAAAAATTGGCTTTGGTTTGGATGGGCCATGTCAATCTCTAATGAAAGCCCACTCAGGCTCAATTATCTCGATTCCAATTTGAGCTCAATTATCTCGATTCCTGTGAGAGATATCGAAAAGTTGTCAACTGATAAAACGTTCATCATATTGTCGTAAAGATTTCAGTTGACCACTTTTTTAGATCTTTCACAAGAATCGAGATAATTGAGTTCAAAGTTGTCGGCTAGGGTAGACTTCTATTAGCGGGAATACGGTATTTCACGCATTTCGACTCTTCCTATTTAGGTGCCGTAAAACCTGCATTAGAAGGGCCTCTTTAATGAATGAGCACCTCAAAATTCGTTGGTTGAAATTAAACAGTACTTTTCAGGGAAAAAATACAGAAATTCTAAAATTTTGTTGAAACACTTTTTTTGCTCAAAAATTGCTCGATTTTGAGGAAATTGATACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCATTTCTTTTCAGGTAAGTTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTGGCCATTTCATAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GCATTTCTTTTCAGGTAAGTTGGGCAATCTTTACAAAAATGAGGATTACTGTAGGTAAGCATAAAGAAAGTATTTTTAATTTATGTGTTAACTATAATTACTGTTTTCTGAAAATCATGGTATTATTGCGAGGGAGGAGCATAACAAAATTAAACTTCTGGTTTTCGAGTTACCAAGAATAATCAAATTCAAGAAGTAAGATTTCAGATCGACTATTTAAAAAGTTCCGTTTGATCTTTATGAAATGGCCAAAA</canonical_amplicon>
		<polymorphic_amplicon>GCATTTCTTTTCAGGTAAGTTGGGCAATCTTTACAAAAATGAGGATTACTGTAGGTAAGCATAAAGAAAGTATTTTTAATTTATGTGTTAACTATAATTACTGTTTTCTGAAAATCATGGTATTATTGCGAGGGAGGAGCATAACAAAATTAAACTTCTGGTTTTCGAGTTACCAAGAATAATCAAATTCAAGAAGTAAGAKTTCAGATCGACTATTTAAAAAGTTCCGTTTGATCTTTATGAAATGGCCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23473</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>761249</contig_pos>
        <strand>+</strand>
        <context>CTTACAAATT[A/C]GAGAAGAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGAAATTAAAACCTTGTCTTTTTATGGCTTAGAATGTTAACTTACAAATT</left_flank>
        <right_flank>GAGAAGAATTTCTGGGCCTCCTGGGTGCATATCGACGAACTTGGTGACGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTAGTTCCGTACAGAATTATGCTCACAAAGGTGTGAAGTGAATAGAAAAAAAAACAAAAAGGTTGACAGTGTGAAAAAAACGGCGAAAAGACGCATGGAAAAGCAACAAGGGACATGGCTTTGATTTGACTAGAATTGAGTCGAGAAAATGTACCCGTAATGGGAAGTTTCAGGACCGCCGATAACGTGGCAGTCAGTCATGAGATGGTAAAAGTTGATGAAAATACGAAAAGAAATGAAAGAAAGTGGGTATGATGTTGTCTCATTTAATGAGCCATTGGAAGAGAGATCTTGGCGTGGGTGATGTATTCAGCTTGAACGAAGTCTGGACGCTCCTCTTCTGGGAGAGATCCAATCTTGAACTTTGTGAGCATCATACGGGCACACATTGAGTGTCCAACGGACTCGAATGCATCGGTGGCATCACCTCCGGCCTGAAAGAAATAGGGAAATTAAAACCTTGTCTTTTTATGGCTTAGAATGTTAACTTACAAATTCGAGAAGAATTTCTGGGCCTCCTGGGTGCATATCGACGAACTTGGTGACGTCGTACACATAGTTTCCAACAATAATCCAACAGTCGTCCTCGCCACAGTGCATGGAGACTTCGGAGCGGGTGAAGATAGCATCAGACATGATTTTTTTGAAGTGAGTGAGTGTGAGGAAGTGCTTCTGAAAAAGTGGGAAGATAAAATTTGGCATGGATAAGAATTGATAAGAAAAGTGTACACGAAAGGGAATCCCCATAGAAACGGACAGAAAAGAAGAAAGACAAGAAGACGGAAGAGACGGAAAGAAACATACAAAAAGAACTTTTTCATATTTTTCCTTTTATTCTCTATTTCTCTTTTTCTCTTCTTCTCTTTATTCTTTTTCTTTTTTGAATGAAACCTTTTAAAATGGGTTCATTTGAGGGATACCCCCGATCTCTTTTATACCATAGTTTTTGAGAAGGCGCGGCTTCAGACAACTTCGGTCCGCCCGAGGCAGTCTCTATC</canonical>
            <polymorphic>TGGTAGTTCCGTACAGAATTATGCTCACAAAGGTGTGAAGTGAATAGAAAAAAAAACAAAAAGGTTGACAGTGTGAAAAAAACGGCGAAAAGACGCATGGAAAAGCAACAAGGGACATGGCTTTGATTTGACTAGAATTGAGTCGAGAAAATGTACCCGTAATGGGAAGTTTCAGGACCGCCGATAACGTGGCAGTCAGTCATGAGATGGTAAAAGTTGATGAAAATACGAAAAGAAATGAAAGAAAGTGGGTATGATGTTGTCTCATTTAATGAGCCATTGGAAGAGAGATCTTGGCGTGGGTGATGTATTCAGCTTGAACGAAGTCTGGACGCTCCTCTTCTGGGAGAGATCCAATCTTGAACTTTGTGAGCATCATACGGGCACACATTGAGTGTCCAACGGACTCGAATGCATCGGTGGCATCACCTCCGGCCTGAAAGAAATAGGGAAATTAAAACCTTGTCTTTTTATGGCTTAGAATGTTAACTTACAAATTMGAGAAGAATTTCTGGGCCTCCTGGGTGCATATCGACGAACTTGGTGACGTCGTACACATAGTTTCCAACAATAATCCAACAGTCGTCCTCGCCACAGTGCATGGAGACTTCGGAGCGGGTGAAGATAGCATCAGACATGATTTTTTTGAAGTGAGTGAGTGTGAGGAAGTGCTTCTGAAAAAGTGGGAAGATAAAATTTGGCATGGATAAGAATTGATAAGAAAAGTGTACACGAAAGGGAATCCCCATAGAAACGGACAGAAAAGAAGAAAGACAAGAAGACGGAAGAGACGGAAAGAAACATACAAAAAGAACTTTTTCATATTTTTCCTTTTATTCTCTATTTCTCTTTTTCTCTTCTTCTCTTTATTCTTTTTCTTTTTTGAATGAAACCTTTTAAAATGGGTTCATTTGAGGGATACCCCCGATCTCTTTTATACCATAGTTTTTGAGAAGGCGCGGCTTCAGACAACTTCGGTCCGCCCGAGGCAGTCTCTATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>495 306 188 11</canonical_bands>
                <polymorphic_bands>506 306 188</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>467 265 144 91 33</canonical_bands>
                <polymorphic_bands>467 265 144 124</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>500 144 141 127 31 29 28</canonical_bands>
                <polymorphic_bands>641 144 127 31 29 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGGGAAATTAAAACCTTGTCTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTATCTTCCCACTTTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAGGGAAATTAAAACCTTGTCTTTTTATGGCTTAGAATGTTAACTTACAAATTCGAGAAGAATTTCTGGGCCTCCTGGGTGCATATCGACGAACTTGGTGACGTCGTACACATAGTTTCCAACAATAATCCAACAGTCGTCCTCGCCACAGTGCATGGAGACTTCGGAGCGGGTGAAGATAGCATCAGACATGATTTTTTTGAAGTGAGTGAGTGTGAGGAAGTGCTTCTGAAAAAGTGGGAAGATAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TAGGGAAATTAAAACCTTGTCTTTTTATGGCTTAGAATGTTAACTTACAAATTMGAGAAGAATTTCTGGGCCTCCTGGGTGCATATCGACGAACTTGGTGACGTCGTACACATAGTTTCCAACAATAATCCAACAGTCGTCCTCGCCACAGTGCATGGAGACTTCGGAGCGGGTGAAGATAGCATCAGACATGATTTTTTTGAAGTGAGTGAGTGTGAGGAAGTGCTTCTGAAAAAGTGGGAAGATAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23474</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>785259</contig_pos>
        <strand></strand>
        <context>CCCGCGTTTC[T/A]CTCTTTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTAAGAGTCGATGGGGAGTAGCGTAGCAAGCAATGCTGCTCCCGCGTTTC</left_flank>
        <right_flank>CTCTTTTTTTACTGTACGGCGGCTCTTGTTTAACAAACAAGAAAAGACAT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAATGAATTTTCAAAGATTTAGGAACTTTTCATAACTTATATCAAACTCAAATCAAATCTTCTCGTTTCAGAAAACCCAAATTGAGTGAGTGAGAAGATATTCTTTGGAGAATAGGCTCTATGGCTCTATAGAACGCAAACATTAAACTCATTTGTTTCCCAAACAAATTGAAAATTCTCGAAACTGCTTTCAGTTTCTGCAAAATCTTTCTCATTTTTTGAAAAATATTTCAAACAGTTTCAGAGTAATTCTAAACTATCAACATCATCCTCAAAATTTGCAGGTTTTAGAAAAAAAGTGTGCAGTACAAACTACAGATTTTATCCTGCAAAAAAGACATACCACCGCTCGATCGCAAAGAAATATCCGCAAAGATAGTCTCAAAGTGAATCATCTTTTTTCGTGAAAATCCTCCAAAGAAAAACTCAGGGGGAACGATTTAGAGAGTTAAGAGTCGATGGGGAGTAGCGTAGCAAGCAATGCTGCTCCCGCGTTTCTCTCTTTTTTTACTGTACGGCGGCTCTTGTTTAACAAACAAGAAAAGACATTGTAATGTGGATAATCCCACAAATTACATGCATCGAATTTATAAGAATGAGATGCACTAGATTTCAATCACAGAGCTCTGGGCGGAGACTCATCTGGATTGTTAGAGCTCCACATTGTTCTAATTGCCCTCCCACAAAATGATTATCAATTTAAAAAATTTTTATTGTAATAAATCTAAACAATTATTAATAAGAAGTAAATACCCGATTGTATCATTTGAATGAGTCTCTCAAAAGTGTGTCAGATGTGCGGGTGCCAGAACAAAAAAACGAATGGAATCGACTAGGACGAGGTAGATTGGAATGATTGATTTAAAATTAGACGGATTACGATGACGAGGATCTCGCTTCATCAGAAGTCTGCCATTTGCCAATGATGAATTTGTCTATTCCACCGTATTTCCAGTTTAGGAACGTACTTATGATGAAGAAGTATAAGAAACCAAGCTG</canonical>
            <polymorphic>GCAATGAATTTTCAAAGATTTAGGAACTTTTCATAACTTATATCAAACTCAAATCAAATCTTCTCGTTTCAGAAAACCCAAATTGAGTGAGTGAGAAGATATTCTTTGGAGAATAGGCTCTATGGCTCTATAGAACGCAAACATTAAACTCATTTGTTTCCCAAACAAATTGAAAATTCTCGAAACTGCTTTCAGTTTCTGCAAAATCTTTCTCATTTTTTGAAAAATATTTCAAACAGTTTCAGAGTAATTCTAAACTATCAACATCATCCTCAAAATTTGCAGGTTTTAGAAAAAAAGTGTGCAGTACAAACTACAGATTTTATCCTGCAAAAAAGACATACCACCGCTCGATCGCAAAGAAATATCCGCAAAGATAGTCTCAAAGTGAATCATCTTTTTTCGTGAAAATCCTCCAAAGAAAAACTCAGGGGGAACGATTTAGAGAGTTAAGAGTCGATGGGGAGTAGCGTAGCAAGCAATGCTGCTCCCGCGTTTCWCTCTTTTTTTACTGTACGGCGGCTCTTGTTTAACAAACAAGAAAAGACATTGTAATGTGGATAATCCCACAAATTACATGCATCGAATTTATAAGAATGAGATGCACTAGATTTCAATCACAGAGCTCTGGGCGGAGACTCATCTGGATTGTTAGAGCTCCACATTGTTCTAATTGCCCTCCCACAAAATGATTATCAATTTAAAAAATTTTTATTGTAATAAATCTAAACAATTATTAATAAGAAGTAAATACCCGATTGTATCATTTGAATGAGTCTCTCAAAAGTGTGTCAGATGTGCGGGTGCCAGAACAAAAAAACGAATGGAATCGACTAGGACGAGGTAGATTGGAATGATTGATTTAAAATTAGACGGATTACGATGACGAGGATCTCGCTTCATCAGAAGTCTGCCATTTGCCAATGATGAATTTGTCTATTCCACCGTATTTCCAGTTTAGGAACGTACTTATGATGAAGAAGTATAAGAAACCAAGCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTACAGATTTTATCCTGCAAAA</pcr_primer_p1>
		<pcr_primer_p2>TCCACATTACAATGTCTTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTACAGATTTTATCCTGCAAAAAAGACATACCACCGCTCGATCGCAAAGAAATATCCGCAAAGATAGTCTCAAAGTGAATCATCTTTTTTCGTGAAAATCCTCCAAAGAAAAACTCAGGGGGAACGATTTAGAGAGTTAAGAGTCGATGGGGAGTAGCGTAGCAAGCAATGCTGCTCCCGCGTTTCTCTCTTTTTTTACTGTACGGCGGCTCTTGTTTAACAAACAAGAAAAGACATTGTAATGTGGA</canonical_amplicon>
		<polymorphic_amplicon>ACTACAGATTTTATCCTGCAAAAAAGACATACCACCGCTCGATCGCAAAGAAATATCCGCAAAGATAGTCTCAAAGTGAATCATCTTTTTTCGTGAAAATCCTCCAAAGAAAAACTCAGGGGGAACGATTTAGAGAGTTAAGAGTCGATGGGGAGTAGCGTAGCAAGCAATGCTGCTCCCGCGTTTCWCTCTTTTTTTACTGTACGGCGGCTCTTGTTTAACAAACAAGAAAAGACATTGTAATGTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23475</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>810965</contig_pos>
        <strand>+</strand>
        <context>GGCAGAAGTA[A/G]TTGGTTGTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTCAAAAGATCTTACTCTTTATCAGGTTCCTGGGCTGCGGCAGAAGTA</left_flank>
        <right_flank>TTGGTTGTGAATCGAAAATTCCCTTGAATGCTTCATCTATGACATGATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGATTTAGAAATAGATGATGAATCAGATGGATCAACGAACACCAATTTCAGAAGTTCATCATGGGCCTCCGATGATTCCAAATCTTCATTGATAACTTCAGGTTTGACTCGTCTATCAATGGAAGTGTCTGTGCGAGTACGGTAGTATGAATGCAATTTCTCATTTGACTTTTTCCGATCGATAGAAGTATCAGTGTGGTCTGAAAAGATAGGATTAATTTCTCTAGCTAAACAATAATCCAACCTCGAAGTGATTTTGTACTACTGAAAAATGCTGCCTCGTCCATGCTCTTTCCAAGAATATCGTCCACAAATTGACTCACATCCAAATTCTCTGGATCAACGTCCGAATCACTGGATCCAATTTCTTCTTGGTGAATAGAAGTAATGTAGTAGTCGTCGTAGTTGTTTTTTCTGAAAGTAAATACAAATGTGAATGAGCTATTGAATTCAAAAGATCTTACTCTTTATCAGGTTCCTGGGCTGCGGCAGAAGTAGTTGGTTGTGAATCGAAAATTCCCTTGAATGCTTCATCTATGACATGATCTGTGATCCTCGTAGACCTTCTTCTCCCTCTGTCTCCACCCGACATCACTCCGCTATCCTCACTTCCAATAGTGTCCCATCCACTCCGATCTTCGTAGAAATTCGAGAATCTTCTGTTCTCATTGGTTGTAGAAGATACTGGACTGAATATTTCATCCATTGAAATATCAGCATCTTTCCATTGGTGAGTTGTTGTCACAGTTTCCGATACTTTTGGGGAAATGTAGTATGTTCGAGTAGATTGAAGCGGTGGTGATGATGTTGATGGAGCTGGTGCATGATCAGTTTGGATCGTCAATGGAGCTGAAAATTGATGGTTTAGGACTGTCAGAGAACGGAGCAAACCTTCTGGATTGAAAATGTCATCAATTGAAAATTCAGATGGATTCATTATAGTCAAAGTTCTTCTCTCTTCCGAGTCATGCGATACTGACTGTCTCTCTTCTCTTGTC</canonical>
            <polymorphic>TCAGATTTAGAAATAGATGATGAATCAGATGGATCAACGAACACCAATTTCAGAAGTTCATCATGGGCCTCCGATGATTCCAAATCTTCATTGATAACTTCAGGTTTGACTCGTCTATCAATGGAAGTGTCTGTGCGAGTACGGTAGTATGAATGCAATTTCTCATTTGACTTTTTCCGATCGATAGAAGTATCAGTGTGGTCTGAAAAGATAGGATTAATTTCTCTAGCTAAACAATAATCCAACCTCGAAGTGATTTTGTACTACTGAAAAATGCTGCCTCGTCCATGCTCTTTCCAAGAATATCGTCCACAAATTGACTCACATCCAAATTCTCTGGATCAACGTCCGAATCACTGGATCCAATTTCTTCTTGGTGAATAGAAGTAATGTAGTAGTCGTCGTAGTTGTTTTTTCTGAAAGTAAATACAAATGTGAATGAGCTATTGAATTCAAAAGATCTTACTCTTTATCAGGTTCCTGGGCTGCGGCAGAAGTARTTGGTTGTGAATCGAAAATTCCCTTGAATGCTTCATCTATGACATGATCTGTGATCCTCGTAGACCTTCTTCTCCCTCTGTCTCCACCCGACATCACTCCGCTATCCTCACTTCCAATAGTGTCCCATCCACTCCGATCTTCGTAGAAATTCGAGAATCTTCTGTTCTCATTGGTTGTAGAAGATACTGGACTGAATATTTCATCCATTGAAATATCAGCATCTTTCCATTGGTGAGTTGTTGTCACAGTTTCCGATACTTTTGGGGAAATGTAGTATGTTCGAGTAGATTGAAGCGGTGGTGATGATGTTGATGGAGCTGGTGCATGATCAGTTTGGATCGTCAATGGAGCTGAAAATTGATGGTTTAGGACTGTCAGAGAACGGAGCAAACCTTCTGGATTGAAAATGTCATCAATTGAAAATTCAGATGGATTCATTATAGTCAAAGTTCTTCTCTCTTCCGAGTCATGCGATACTGACTGTCTCTCTTCTCTTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGACTCACATCCAAATTCTC</pcr_primer_p1>
		<pcr_primer_p2>GTCTACGAGGATCACAGATCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTGACTCACATCCAAATTCTCTGGATCAACGTCCGAATCACTGGATCCAATTTCTTCTTGGTGAATAGAAGTAATGTAGTAGTCGTCGTAGTTGTTTTTTCTGAAAGTAAATACAAATGTGAATGAGCTATTGAATTCAAAAGATCTTACTCTTTATCAGGTTCCTGGGCTGCGGCAGAAGTAGTTGGTTGTGAATCGAAAATTCCCTTGAATGCTTCATCTATGACATGATCTGTGATCCTCGTAGAC</canonical_amplicon>
		<polymorphic_amplicon>ATTGACTCACATCCAAATTCTCTGGATCAACGTCCGAATCACTGGATCCAATTTCTTCTTGGTGAATAGAAGTAATGTAGTAGTCGTCGTAGTTGTTTTTTCTGAAAGTAAATACAAATGTGAATGAGCTATTGAATTCAAAAGATCTTACTCTTTATCAGGTTCCTGGGCTGCGGCAGAAGTARTTGGTTGTGAATCGAAAATTCCCTTGAATGCTTCATCTATGACATGATCTGTGATCCTCGTAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23476</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>838795</contig_pos>
        <strand>+</strand>
        <context>GATGAGAATG[C/T]TATAGAATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAAGGTTGTTTATAATCCAGTAATTTTCAATTCACAAGGGATGAGAATG</left_flank>
        <right_flank>TATAGAATTCGTTTGTTGAAACAAAAACAAAGATCTTGAAGATGAAATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGCGGAAGTTTGTACGACCACATTTTCACGAAAGAACGGTCGAGAGATACTGCAACGAACTTCGAAGGAGCATTTCTTCGTGATATTCTGAAAGGCTTAGACTATTTGCATAACAGCAGTCTGGAATATCATGGAAATCTAACTCTTCATAATTGTCTTTTGGATTCTCATTGGATCGTTAAAATCAGTGGTTTCGGTGTCAATCGTCTTCTTGTCAAATGGAAGGCCAGCGGACAAATATTCACAGAAGATCACACGCCAGTCTTAAAATCAGAAGGTTTGTTGGAAGTGGAGAGATTCAGAGACAAGGGCATTGAACGTATAATTATGTGATGGATGATATTTTTTGAAATAAGAGTGCGAGGGAGTGATAAATAAGTTGAGAATTCGTGTATTCAATGTAGGCATTACTCATAACTAACTTCTAATTAGTGGGTGTTGGCGAGGCAAAGGTTGTTTATAATCCAGTAATTTTCAATTCACAAGGGATGAGAATGCTATAGAATTCGTTTGTTGAAACAAAAACAAAGATCTTGAAGATGAAATAATCGCCGTAAAACCTGTAGTAGAAGGGCCCCTAAATTTCACTTTTGAGGCAATTTATCTCGCTTCTTGTCACAGATATGAAAAATATGTCAAGTGATAAATTGTTTATCATAATATCAGAAGTATTTTGTCATTTGACACATTCTTGATATCTTTTACAGGAATCGAGATAATTGAGCTCAAAGTTGAAGGTAATTTATCTTTTGAAAGGAGAAATGTCAAACACAATTTGGCTTTATCCTTCAAAAAACTGATTCATATATAGTTCTTTGCAGAAATTCATTATTTTGATCCTTTAATGAAGGCGGTGTGGAAATCTATGAATGGAACGAAACAAGACAAAGGAATGATATCAGGGGATATGGGAAGAAGAGGTGACATGTACTCGTTTGGTGTCATTTTGTACGAGATTTGCTTCAAAAAGAAAATGGTTCCACCATTGTTTGATTATC</canonical>
            <polymorphic>TCAGCGGAAGTTTGTACGACCACATTTTCACGAAAGAACGGTCGAGAGATACTGCAACGAACTTCGAAGGAGCATTTCTTCGTGATATTCTGAAAGGCTTAGACTATTTGCATAACAGCAGTCTGGAATATCATGGAAATCTAACTCTTCATAATTGTCTTTTGGATTCTCATTGGATCGTTAAAATCAGTGGTTTCGGTGTCAATCGTCTTCTTGTCAAATGGAAGGCCAGCGGACAAATATTCACAGAAGATCACACGCCAGTCTTAAAATCAGAAGGTTTGTTGGAAGTGGAGAGATTCAGAGACAAGGGCATTGAACGTATAATTATGTGATGGATGATATTTTTTGAAATAAGAGTGCGAGGGAGTGATAAATAAGTTGAGAATTCGTGTATTCAATGTAGGCATTACTCATAACTAACTTCTAATTAGTGGGTGTTGGCGAGGCAAAGGTTGTTTATAATCCAGTAATTTTCAATTCACAAGGGATGAGAATGYTATAGAATTCGTTTGTTGAAACAAAAACAAAGATCTTGAAGATGAAATAATCGCCGTAAAACCTGTAGTAGAAGGGCCCCTAAATTTCACTTTTGAGGCAATTTATCTCGCTTCTTGTCACAGATATGAAAAATATGTCAAGTGATAAATTGTTTATCATAATATCAGAAGTATTTTGTCATTTGACACATTCTTGATATCTTTTACAGGAATCGAGATAATTGAGCTCAAAGTTGAAGGTAATTTATCTTTTGAAAGGAGAAATGTCAAACACAATTTGGCTTTATCCTTCAAAAAACTGATTCATATATAGTTCTTTGCAGAAATTCATTATTTTGATCCTTTAATGAAGGCGGTGTGGAAATCTATGAATGGAACGAAACAAGACAAAGGAATGATATCAGGGGATATGGGAAGAAGAGGTGACATGTACTCGTTTGGTGTCATTTTGTACGAGATTTGCTTCAAAAAGAAAATGGTTCCACCATTGTTTGATTATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 437 63</canonical_bands>
                <polymorphic_bands>563 437</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGCATTACTCATAACTAACTTCTAA</pcr_primer_p1>
		<pcr_primer_p2>GTTTGACATTTCTCCTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>368</pcr_amplicon_size>
		<canonical_amplicon>AGGCATTACTCATAACTAACTTCTAATTAGTGGGTGTTGGCGAGGCAAAGGTTGTTTATAATCCAGTAATTTTCAATTCACAAGGGATGAGAATGCTATAGAATTCGTTTGTTGAAACAAAAACAAAGATCTTGAAGATGAAATAATCGCCGTAAAACCTGTAGTAGAAGGGCCCCTAAATTTCACTTTTGAGGCAATTTATCTCGCTTCTTGTCACAGATATGAAAAATATGTCAAGTGATAAATTGTTTATCATAATATCAGAAGTATTTTGTCATTTGACACATTCTTGATATCTTTTACAGGAATCGAGATAATTGAGCTCAAAGTTGAAGGTAATTTATCTTTTGAAAGGAGAAATGTCAAAC</canonical_amplicon>
		<polymorphic_amplicon>AGGCATTACTCATAACTAACTTCTAATTAGTGGGTGTTGGCGAGGCAAAGGTTGTTTATAATCCAGTAATTTTCAATTCACAAGGGATGAGAATGYTATAGAATTCGTTTGTTGAAACAAAAACAAAGATCTTGAAGATGAAATAATCGCCGTAAAACCTGTAGTAGAAGGGCCCCTAAATTTCACTTTTGAGGCAATTTATCTCGCTTCTTGTCACAGATATGAAAAATATGTCAAGTGATAAATTGTTTATCATAATATCAGAAGTATTTTGTCATTTGACACATTCTTGATATCTTTTACAGGAATCGAGATAATTGAGCTCAAAGTTGAAGGTAATTTATCTTTTGAAAGGAGAAATGTCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23477</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>972635</contig_pos>
        <strand>+</strand>
        <context>GCGAATGRRR[C/T]GTKCMATGGC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGAT</left_flank>
        <right_flank>GTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATAAAAATACCGTATTTCCTCTAATAGAGGCCCATAGGCTTTTATTTTTTTAACCTCCTTCTGGGGGTGGACTAAATTTAGAAAAAAACGCTCAATTTATAAGGTTTTCGGTTTTTAACTGGACTGGAATAGTTATGAAACGACAATAACTAACGGGAAATACCAGAAAAATAAACAAGACAGATTATGTCTGCACTAACCGAAAAGAAAAATGCACAGCCAGGGTGGGCTTCAAATAGAGTATATTCTATCAAATAGTATATATTCTATTAGAGAAACTACTGTATTAAATTTTGAAAACAACGAACAGAGCATCTTGATGAAGCTTAAATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCCAACTGCCTCCTAATTCTTTTCCATTTTTATCCTTTAGTGCAGTAATTACCACCCATTCGCCATTGTACCATCCATTCGCCATAGTCCCGCTATAATCGAACAGAGCCGATTCTTCTACCGTTATCTGGTGTTGTATTTAAGCTTCATCAAGATGCTCTGTTCGTTGTTTTCAAAATTTAATACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAATCT</canonical>
            <polymorphic>ATATAAAAATACCGTATTTCCTCTAATAGAGGCCCATAGGCTTTTATTTTTTTAACCTCCTTCTGGGGGTGGACTAAATTTAGAAAAAAACGCTCAATTTATAAGGTTTTCGGTTTTTAACTGGACTGGAATAGTTATGAAACGACAATAACTAACGGGAAATACCAGAAAAATAAACAAGACAGATTATGTCTGCACTAACCGAAAAGAAAAATGCACAGCCAGGGTGGGCTTCAAATAGAGTATATTCTATCAAATAGTATATATTCTATTAGAGAAACTACTGTATTAAATTTTGAAAACAACGAACAGAGCATCTTGATGAAGCTTAAATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATYGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCCAACTGCCTCCTAATTCTTTTCCATTTTTATCCTTTAGTGCAGTAATTACCACCCATTCGCCATTGTACCATCCATTCGCCATAGTCCCGCTATAATCGAACAGAGCCGATTCTTCTACCGTTATCTGGTGTTGTATTTAAGCTTCATCAAGATGCTCTGTTCGTTGTTTTCAAAATTTAATACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATACAACACCAGATAACGGTAG</pcr_primer_p1>
		<pcr_primer_p2>GAATTCCTATGAAACCTTTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATYGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTC</canonical_amplicon>
		<polymorphic_amplicon>AATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATYGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23478</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>972638</contig_pos>
        <strand>+</strand>
        <context>AATGRRRYGT[G/T]CMATGGCAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGT</left_flank>
        <right_flank>CAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAAATACCGTATTTCCTCTAATAGAGGCCCATAGGCTTTTATTTTTTTAACCTCCTTCTGGGGGTGGACTAAATTTAGAAAAAAACGCTCAATTTATAAGGTTTTCGGTTTTTAACTGGACTGGAATAGTTATGAAACGACAATAACTAACGGGAAATACCAGAAAAATAAACAAGACAGATTATGTCTGCACTAACCGAAAAGAAAAATGCACAGCCAGGGTGGGCTTCAAATAGAGTATATTCTATCAAATAGTATATATTCTATTAGAGAAACTACTGTATTAAATTTTGAAAACAACGAACAGAGCATCTTGATGAAGCTTAAATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCCAACTGCCTCCTAATTCTTTTCCATTTTTATCCTTTAGTGCAGTAATTACCACCCATTCGCCATTGTACCATCCATTCGCCATAGTCCCGCTATAATCGAACAGAGCCGATTCTTCTACCGTTATCTGGTGTTGTATTTAAGCTTCATCAAGATGCTCTGTTCGTTGTTTTCAAAATTTAATACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAATCTGTC</canonical>
            <polymorphic>TAAAAATACCGTATTTCCTCTAATAGAGGCCCATAGGCTTTTATTTTTTTAACCTCCTTCTGGGGGTGGACTAAATTTAGAAAAAAACGCTCAATTTATAAGGTTTTCGGTTTTTAACTGGACTGGAATAGTTATGAAACGACAATAACTAACGGGAAATACCAGAAAAATAAACAAGACAGATTATGTCTGCACTAACCGAAAAGAAAAATGCACAGCCAGGGTGGGCTTCAAATAGAGTATATTCTATCAAATAGTATATATTCTATTAGAGAAACTACTGTATTAAATTTTGAAAACAACGAACAGAGCATCTTGATGAAGCTTAAATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTKCAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCCAACTGCCTCCTAATTCTTTTCCATTTTTATCCTTTAGTGCAGTAATTACCACCCATTCGCCATTGTACCATCCATTCGCCATAGTCCCGCTATAATCGAACAGAGCCGATTCTTCTACCGTTATCTGGTGTTGTATTTAAGCTTCATCAAGATGCTCTGTTCGTTGTTTTCAAAATTTAATACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAATCTGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>400 279 222 40 20 20 19</canonical_bands>
                <polymorphic_bands>400 299 222 40 20 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATACAACACCAGATAACGGTAG</pcr_primer_p1>
		<pcr_primer_p2>GAATTCCTATGAAACCTTTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTC</canonical_amplicon>
		<polymorphic_amplicon>AATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTKCAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23479</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>972640</contig_pos>
        <strand>+</strand>
        <context>TGRRRYGTKC[A/C]ATGGCAGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTAC</left_flank>
        <right_flank>ATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATACCGTATTTCCTCTAATAGAGGCCCATAGGCTTTTATTTTTTTAACCTCCTTCTGGGGGTGGACTAAATTTAGAAAAAAACGCTCAATTTATAAGGTTTTCGGTTTTTAACTGGACTGGAATAGTTATGAAACGACAATAACTAACGGGAAATACCAGAAAAATAAACAAGACAGATTATGTCTGCACTAACCGAAAAGAAAAATGCACAGCCAGGGTGGGCTTCAAATAGAGTATATTCTATCAAATAGTATATATTCTATTAGAGAAACTACTGTATTAAATTTTGAAAACAACGAACAGAGCATCTTGATGAAGCTTAAATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCCAACTGCCTCCTAATTCTTTTCCATTTTTATCCTTTAGTGCAGTAATTACCACCCATTCGCCATTGTACCATCCATTCGCCATAGTCCCGCTATAATCGAACAGAGCCGATTCTTCTACCGTTATCTGGTGTTGTATTTAAGCTTCATCAAGATGCTCTGTTCGTTGTTTTCAAAATTTAATACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAATCTGTCTT</canonical>
            <polymorphic>AAAATACCGTATTTCCTCTAATAGAGGCCCATAGGCTTTTATTTTTTTAACCTCCTTCTGGGGGTGGACTAAATTTAGAAAAAAACGCTCAATTTATAAGGTTTTCGGTTTTTAACTGGACTGGAATAGTTATGAAACGACAATAACTAACGGGAAATACCAGAAAAATAAACAAGACAGATTATGTCTGCACTAACCGAAAAGAAAAATGCACAGCCAGGGTGGGCTTCAAATAGAGTATATTCTATCAAATAGTATATATTCTATTAGAGAAACTACTGTATTAAATTTTGAAAACAACGAACAGAGCATCTTGATGAAGCTTAAATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACMATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCCAACTGCCTCCTAATTCTTTTCCATTTTTATCCTTTAGTGCAGTAATTACCACCCATTCGCCATTGTACCATCCATTCGCCATAGTCCCGCTATAATCGAACAGAGCCGATTCTTCTACCGTTATCTGGTGTTGTATTTAAGCTTCATCAAGATGCTCTGTTCGTTGTTTTCAAAATTTAATACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAATCTGTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATACAACACCAGATAACGGTAG</pcr_primer_p1>
		<pcr_primer_p2>GAATTCCTATGAAACCTTTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTC</canonical_amplicon>
		<polymorphic_amplicon>AATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACMATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23480</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>972676</contig_pos>
        <strand>+</strand>
        <context>CTGTCTAAGA[A/T]CYCAGGTTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGA</left_flank>
        <right_flank>CACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTATTTTTTTAACCTCCTTCTGGGGGTGGACTAAATTTAGAAAAAAACGCTCAATTTATAAGGTTTTCGGTTTTTAACTGGACTGGAATAGTTATGAAACGACAATAACTAACGGGAAATACCAGAAAAATAAACAAGACAGATTATGTCTGCACTAACCGAAAAGAAAAATGCACAGCCAGGGTGGGCTTCAAATAGAGTATATTCTATCAAATAGTATATATTCTATTAGAGAAACTACTGTATTAAATTTTGAAAACAACGAACAGAGCATCTTGATGAAGCTTAAATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCCAACTGCCTCCTAATTCTTTTCCATTTTTATCCTTTAGTGCAGTAATTACCACCCATTCGCCATTGTACCATCCATTCGCCATAGTCCCGCTATAATCGAACAGAGCCGATTCTTCTACCGTTATCTGGTGTTGTATTTAAGCTTCATCAAGATGCTCTGTTCGTTGTTTTCAAAATTTAATACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAATCTGTCTTGTTTATTTTTCTGGTATTTCCCGTTAGTTATTGTCG</canonical>
            <polymorphic>TTTTATTTTTTTAACCTCCTTCTGGGGGTGGACTAAATTTAGAAAAAAACGCTCAATTTATAAGGTTTTCGGTTTTTAACTGGACTGGAATAGTTATGAAACGACAATAACTAACGGGAAATACCAGAAAAATAAACAAGACAGATTATGTCTGCACTAACCGAAAAGAAAAATGCACAGCCAGGGTGGGCTTCAAATAGAGTATATTCTATCAAATAGTATATATTCTATTAGAGAAACTACTGTATTAAATTTTGAAAACAACGAACAGAGCATCTTGATGAAGCTTAAATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGAWCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCCAACTGCCTCCTAATTCTTTTCCATTTTTATCCTTTAGTGCAGTAATTACCACCCATTCGCCATTGTACCATCCATTCGCCATAGTCCCGCTATAATCGAACAGAGCCGATTCTTCTACCGTTATCTGGTGTTGTATTTAAGCTTCATCAAGATGCTCTGTTCGTTGTTTTCAAAATTTAATACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAATCTGTCTTGTTTATTTTTCTGGTATTTCCCGTTAGTTATTGTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>497 419 45 39</canonical_bands>
                <polymorphic_bands>542 419 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAATAATGAGTGGTACAATAGG</pcr_primer_p1>
		<pcr_primer_p2>GGCGTCTAAACAATCAAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCC</canonical_amplicon>
		<polymorphic_amplicon>GGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGAWCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23481</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>972678</contig_pos>
        <strand>+</strand>
        <context>GTCTAAGAWC[C/T]CAGGTTCCCM</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATC</left_flank>
        <right_flank>CAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATTTTTTTAACCTCCTTCTGGGGGTGGACTAAATTTAGAAAAAAACGCTCAATTTATAAGGTTTTCGGTTTTTAACTGGACTGGAATAGTTATGAAACGACAATAACTAACGGGAAATACCAGAAAAATAAACAAGACAGATTATGTCTGCACTAACCGAAAAGAAAAATGCACAGCCAGGGTGGGCTTCAAATAGAGTATATTCTATCAAATAGTATATATTCTATTAGAGAAACTACTGTATTAAATTTTGAAAACAACGAACAGAGCATCTTGATGAAGCTTAAATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCCAACTGCCTCCTAATTCTTTTCCATTTTTATCCTTTAGTGCAGTAATTACCACCCATTCGCCATTGTACCATCCATTCGCCATAGTCCCGCTATAATCGAACAGAGCCGATTCTTCTACCGTTATCTGGTGTTGTATTTAAGCTTCATCAAGATGCTCTGTTCGTTGTTTTCAAAATTTAATACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAATCTGTCTTGTTTATTTTTCTGGTATTTCCCGTTAGTTATTGTCGTT</canonical>
            <polymorphic>TTATTTTTTTAACCTCCTTCTGGGGGTGGACTAAATTTAGAAAAAAACGCTCAATTTATAAGGTTTTCGGTTTTTAACTGGACTGGAATAGTTATGAAACGACAATAACTAACGGGAAATACCAGAAAAATAAACAAGACAGATTATGTCTGCACTAACCGAAAAGAAAAATGCACAGCCAGGGTGGGCTTCAAATAGAGTATATTCTATCAAATAGTATATATTCTATTAGAGAAACTACTGTATTAAATTTTGAAAACAACGAACAGAGCATCTTGATGAAGCTTAAATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCYCAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCCAACTGCCTCCTAATTCTTTTCCATTTTTATCCTTTAGTGCAGTAATTACCACCCATTCGCCATTGTACCATCCATTCGCCATAGTCCCGCTATAATCGAACAGAGCCGATTCTTCTACCGTTATCTGGTGTTGTATTTAAGCTTCATCAAGATGCTCTGTTCGTTGTTTTCAAAATTTAATACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAATCTGTCTTGTTTATTTTTCTGGTATTTCCCGTTAGTTATTGTCGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>126 111 111 80 79 67 65 63 55 38 28 26 21 21 20 20 20 15 12 11 11</canonical_bands>
                <polymorphic_bands>126 111 111 101 80 79 67 65 55 28 26 21 21 20 20 20 15 12 11 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAATAATGAGTGGTACAATAGG</pcr_primer_p1>
		<pcr_primer_p2>GGCGTCTAAACAATCAAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCC</canonical_amplicon>
		<polymorphic_amplicon>GGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCYCAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23482</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>972688</contig_pos>
        <strand>+</strand>
        <context>YCAGGTTCCC[A/C]GARRGTTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCC</left_flank>
        <right_flank>GAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCTCCTTCTGGGGGTGGACTAAATTTAGAAAAAAACGCTCAATTTATAAGGTTTTCGGTTTTTAACTGGACTGGAATAGTTATGAAACGACAATAACTAACGGGAAATACCAGAAAAATAAACAAGACAGATTATGTCTGCACTAACCGAAAAGAAAAATGCACAGCCAGGGTGGGCTTCAAATAGAGTATATTCTATCAAATAGTATATATTCTATTAGAGAAACTACTGTATTAAATTTTGAAAACAACGAACAGAGCATCTTGATGAAGCTTAAATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCCAACTGCCTCCTAATTCTTTTCCATTTTTATCCTTTAGTGCAGTAATTACCACCCATTCGCCATTGTACCATCCATTCGCCATAGTCCCGCTATAATCGAACAGAGCCGATTCTTCTACCGTTATCTGGTGTTGTATTTAAGCTTCATCAAGATGCTCTGTTCGTTGTTTTCAAAATTTAATACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAATCTGTCTTGTTTATTTTTCTGGTATTTCCCGTTAGTTATTGTCGTTTCATAACTAT</canonical>
            <polymorphic>AACCTCCTTCTGGGGGTGGACTAAATTTAGAAAAAAACGCTCAATTTATAAGGTTTTCGGTTTTTAACTGGACTGGAATAGTTATGAAACGACAATAACTAACGGGAAATACCAGAAAAATAAACAAGACAGATTATGTCTGCACTAACCGAAAAGAAAAATGCACAGCCAGGGTGGGCTTCAAATAGAGTATATTCTATCAAATAGTATATATTCTATTAGAGAAACTACTGTATTAAATTTTGAAAACAACGAACAGAGCATCTTGATGAAGCTTAAATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCMGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCCAACTGCCTCCTAATTCTTTTCCATTTTTATCCTTTAGTGCAGTAATTACCACCCATTCGCCATTGTACCATCCATTCGCCATAGTCCCGCTATAATCGAACAGAGCCGATTCTTCTACCGTTATCTGGTGTTGTATTTAAGCTTCATCAAGATGCTCTGTTCGTTGTTTTCAAAATTTAATACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAATCTGTCTTGTTTATTTTTCTGGTATTTCCCGTTAGTTATTGTCGTTTCATAACTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 482 17</canonical_bands>
                <polymorphic_bands>518 482</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAATAATGAGTGGTACAATAGG</pcr_primer_p1>
		<pcr_primer_p2>GGCGTCTAAACAATCAAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCC</canonical_amplicon>
		<polymorphic_amplicon>GGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCMGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23483</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>972692</contig_pos>
        <strand>+</strand>
        <context>GTTCCCMGAR[A/G]GTTCAAAGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAG</left_flank>
        <right_flank>GTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTTCTGGGGGTGGACTAAATTTAGAAAAAAACGCTCAATTTATAAGGTTTTCGGTTTTTAACTGGACTGGAATAGTTATGAAACGACAATAACTAACGGGAAATACCAGAAAAATAAACAAGACAGATTATGTCTGCACTAACCGAAAAGAAAAATGCACAGCCAGGGTGGGCTTCAAATAGAGTATATTCTATCAAATAGTATATATTCTATTAGAGAAACTACTGTATTAAATTTTGAAAACAACGAACAGAGCATCTTGATGAAGCTTAAATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCCAACTGCCTCCTAATTCTTTTCCATTTTTATCCTTTAGTGCAGTAATTACCACCCATTCGCCATTGTACCATCCATTCGCCATAGTCCCGCTATAATCGAACAGAGCCGATTCTTCTACCGTTATCTGGTGTTGTATTTAAGCTTCATCAAGATGCTCTGTTCGTTGTTTTCAAAATTTAATACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAATCTGTCTTGTTTATTTTTCTGGTATTTCCCGTTAGTTATTGTCGTTTCATAACTATTCCA</canonical>
            <polymorphic>TCCTTCTGGGGGTGGACTAAATTTAGAAAAAAACGCTCAATTTATAAGGTTTTCGGTTTTTAACTGGACTGGAATAGTTATGAAACGACAATAACTAACGGGAAATACCAGAAAAATAAACAAGACAGATTATGTCTGCACTAACCGAAAAGAAAAATGCACAGCCAGGGTGGGCTTCAAATAGAGTATATTCTATCAAATAGTATATATTCTATTAGAGAAACTACTGTATTAAATTTTGAAAACAACGAACAGAGCATCTTGATGAAGCTTAAATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGRGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCCAACTGCCTCCTAATTCTTTTCCATTTTTATCCTTTAGTGCAGTAATTACCACCCATTCGCCATTGTACCATCCATTCGCCATAGTCCCGCTATAATCGAACAGAGCCGATTCTTCTACCGTTATCTGGTGTTGTATTTAAGCTTCATCAAGATGCTCTGTTCGTTGTTTTCAAAATTTAATACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAATCTGTCTTGTTTATTTTTCTGGTATTTCCCGTTAGTTATTGTCGTTTCATAACTATTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAATAATGAGTGGTACAATAGG</pcr_primer_p1>
		<pcr_primer_p2>GGCGTCTAAACAATCAAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCC</canonical_amplicon>
		<polymorphic_amplicon>GGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGRGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23484</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>972716</contig_pos>
        <strand>+</strand>
        <context>ATAGGAATTC[A/G]CAGATCTCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTC</left_flank>
        <right_flank>CAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAAAAAACGCTCAATTTATAAGGTTTTCGGTTTTTAACTGGACTGGAATAGTTATGAAACGACAATAACTAACGGGAAATACCAGAAAAATAAACAAGACAGATTATGTCTGCACTAACCGAAAAGAAAAATGCACAGCCAGGGTGGGCTTCAAATAGAGTATATTCTATCAAATAGTATATATTCTATTAGAGAAACTACTGTATTAAATTTTGAAAACAACGAACAGAGCATCTTGATGAAGCTTAAATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCCAACTGCCTCCTAATTCTTTTCCATTTTTATCCTTTAGTGCAGTAATTACCACCCATTCGCCATTGTACCATCCATTCGCCATAGTCCCGCTATAATCGAACAGAGCCGATTCTTCTACCGTTATCTGGTGTTGTATTTAAGCTTCATCAAGATGCTCTGTTCGTTGTTTTCAAAATTTAATACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAATCTGTCTTGTTTATTTTTCTGGTATTTCCCGTTAGTTATTGTCGTTTCATAACTATTCCAGTCCAGTTAAAAACCGAAAACCTT</canonical>
            <polymorphic>AGAAAAAAACGCTCAATTTATAAGGTTTTCGGTTTTTAACTGGACTGGAATAGTTATGAAACGACAATAACTAACGGGAAATACCAGAAAAATAAACAAGACAGATTATGTCTGCACTAACCGAAAAGAAAAATGCACAGCCAGGGTGGGCTTCAAATAGAGTATATTCTATCAAATAGTATATATTCTATTAGAGAAACTACTGTATTAAATTTTGAAAACAACGAACAGAGCATCTTGATGAAGCTTAAATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCRCAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCCAACTGCCTCCTAATTCTTTTCCATTTTTATCCTTTAGTGCAGTAATTACCACCCATTCGCCATTGTACCATCCATTCGCCATAGTCCCGCTATAATCGAACAGAGCCGATTCTTCTACCGTTATCTGGTGTTGTATTTAAGCTTCATCAAGATGCTCTGTTCGTTGTTTTCAAAATTTAATACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAATCTGTCTTGTTTATTTTTCTGGTATTTCCCGTTAGTTATTGTCGTTTCATAACTATTCCAGTCCAGTTAAAAACCGAAAACCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>116 111 111 93 80 79 67 65 63 38 26 21 21 20 20 20 15 12 11 11</canonical_bands>
                <polymorphic_bands>116 111 111 103 93 80 79 67 63 26 21 21 20 20 20 15 12 11 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAATAATGAGTGGTACAATAGG</pcr_primer_p1>
		<pcr_primer_p2>GGCGTCTAAACAATCAAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCC</canonical_amplicon>
		<polymorphic_amplicon>GGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCRCAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23485</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>972735</contig_pos>
        <strand>+</strand>
        <context>ATKGAAAATT[A/T]CCGCATCTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATT</left_flank>
        <right_flank>CCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAGGTTTTCGGTTTTTAACTGGACTGGAATAGTTATGAAACGACAATAACTAACGGGAAATACCAGAAAAATAAACAAGACAGATTATGTCTGCACTAACCGAAAAGAAAAATGCACAGCCAGGGTGGGCTTCAAATAGAGTATATTCTATCAAATAGTATATATTCTATTAGAGAAACTACTGTATTAAATTTTGAAAACAACGAACAGAGCATCTTGATGAAGCTTAAATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCCAACTGCCTCCTAATTCTTTTCCATTTTTATCCTTTAGTGCAGTAATTACCACCCATTCGCCATTGTACCATCCATTCGCCATAGTCCCGCTATAATCGAACAGAGCCGATTCTTCTACCGTTATCTGGTGTTGTATTTAAGCTTCATCAAGATGCTCTGTTCGTTGTTTTCAAAATTTAATACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAATCTGTCTTGTTTATTTTTCTGGTATTTCCCGTTAGTTATTGTCGTTTCATAACTATTCCAGTCCAGTTAAAAACCGAAAACCTTATAAATTGAGCGTTTTTTT</canonical>
            <polymorphic>ATAAGGTTTTCGGTTTTTAACTGGACTGGAATAGTTATGAAACGACAATAACTAACGGGAAATACCAGAAAAATAAACAAGACAGATTATGTCTGCACTAACCGAAAAGAAAAATGCACAGCCAGGGTGGGCTTCAAATAGAGTATATTCTATCAAATAGTATATATTCTATTAGAGAAACTACTGTATTAAATTTTGAAAACAACGAACAGAGCATCTTGATGAAGCTTAAATACAACACCAGATAACGGTAGAAGAATCGGCTCTGTTCGATTATAGCGGGACTAATGGCGAATGGATGGTACAATGGCGAATGGGTGGTACAATGACCGAATGAGTGGTACAATGACCGAATGAGTGGTCCAATGGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTWCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCCAACTGCCTCCTAATTCTTTTCCATTTTTATCCTTTAGTGCAGTAATTACCACCCATTCGCCATTGTACCATCCATTCGCCATAGTCCCGCTATAATCGAACAGAGCCGATTCTTCTACCGTTATCTGGTGTTGTATTTAAGCTTCATCAAGATGCTCTGTTCGTTGTTTTCAAAATTTAATACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAATCTGTCTTGTTTATTTTTCTGGTATTTCCCGTTAGTTATTGTCGTTTCATAACTATTCCAGTCCAGTTAAAAACCGAAAACCTTATAAATTGAGCGTTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>293 284 212 191 20</canonical_bands>
                <polymorphic_bands>313 284 212 191</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAATAATGAGTGGTACAATAGG</pcr_primer_p1>
		<pcr_primer_p2>GGCGTCTAAACAATCAAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTTCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCC</canonical_amplicon>
		<polymorphic_amplicon>GGAATAATGAGTGGTACAATAGGCGAATGGATGGTACAATGGCAGAATAAGCTCCTCCAAACTCTGTCTAAGATCACAGGTTCCCTGAGAGTTCAAAGGTTTCATAGGAATTCACAGATCTCATTGAAAATTWCCGCATCTTATAAGCATACGGAGATCTCATATATTGTTTGACAGTGCTTGATTTTTTTTCAATCATTTAGTGCAGTAATTGTATGTGTAGAAAATAATTTGATTGTTTAGACGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23486</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>973521</contig_pos>
        <strand></strand>
        <context>ACTGTCAGTT[A/G]aaatattasa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTACATGAAATACTGTAATAGAAGGGTCCCGTAAATGTACTGTCAGTT</left_flank>
        <right_flank>AAATATTAGACTGCGCCGAAGGCGCACCAGCCAGCTGTTCGAAAAAAACA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATTTAATACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAATCTGTCTTGTTTATTTTTCTGGTATTTCCCGTTAGTTATTGTCGTTTCATAACTATTCCAGTCCAGTTAAAAACCGAAAACCTTATAAATTGAGCGTTTTTTTCTAAATTTAGTCCACCCCCAGAAGGAGGTTAAAAAAATAAAAGCCTATGGGCCTCTATTAGAGGAAATACGGTATTTTTATAATTCGACTATTTACCATTACATGTGTTGAGAGGATACTACGAAGCTATTATTCTGATAATCACAGTTTATTAAAGAGGCTTTAGAAAAAATCATTTATTGAGTTTATGAATGGAATGTCAGAAGTGTTACCATTGCCTTTGGATACAGCAAGCAGTTACATGAAATACTGTAATAGAAGGGTCCCGTAAATGTACTGTCAGTTAAAATATTAGACTGCGCCGAAGGCGCACCAGCCAGCTGTTCGAAAAAAACAGTTTGGTTTGTTTAATGATCGAGAGTGATAGTAGCATGTCAATTTATATTATTGCTGGGCAAGTACAAAAAAAAACATTCCACGATCATTTCAGTGTCTCACAGATACCCAAATTTGAGGATTAGTGTGACTGGCTTCTTCCCTTGATCCGAACAATCTGCTTTTTAAAAGTGAGAGTCGTTCGTTGAACATAACCATAACAAATCTGTAACAAACGTATTCATATTTTTGAATTTCCGAGGTATACTGTACCCATCAATGGAATGAACACACTGCCAAACCAGTGTAACACTTATAAATGTCCAATATCTTTGCTTACTTATCTCACTGAGTTTGAATGTGAAAAGCATATCTATCAACATAATAGCATCTTGGAATACAGTCTGGGAGAACAATAAATTGTTCTTTCTAGACTTTCTCCTCATTTCTCCTTGTTCCGTTTCTGTCGAT</canonical>
            <polymorphic>AAAATTTAATACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAATCTGTCTTGTTTATTTTTCTGGTATTTCCCGTTAGTTATTGTCGTTTCATAACTATTCCAGTCCAGTTAAAAACCGAAAACCTTATAAATTGAGCGTTTTTTTCTAAATTTAGTCCACCCCCAGAAGGAGGTTAAAAAAATAAAAGCCTATGGGCCTCTATTAGAGGAAATACGGTATTTTTATAATTCGACTATTTACCATTACATGTGTTGAGAGGATACTACGAAGCTATTATTCTGATAATCACAGTTTATTAAAGAGGCTTTAGAAAAAATCATTTATTGAGTTTATGAATGGAATGTCAGAAGTGTTACCATTGCCTTTGGATACAGCAAGCAGTTACATGAAATACTGTAATAGAAGGGTCCCGTAAATGTACTGTCAGTTRAAATATTAGACTGCGCCGAAGGCGCACCAGCCAGCTGTTCGAAAAAAACAGTTTGGTTTGTTTAATGATCGAGAGTGATAGTAGCATGTCAATTTATATTATTGCTGGGCAAGTACAAAAAAAAACATTCCACGATCATTTCAGTGTCTCACAGATACCCAAATTTGAGGATTAGTGTGACTGGCTTCTTCCCTTGATCCGAACAATCTGCTTTTTAAAAGTGAGAGTCGTTCGTTGAACATAACCATAACAAATCTGTAACAAACGTATTCATATTTTTGAATTTCCGAGGTATACTGTACCCATCAATGGAATGAACACACTGCCAAACCAGTGTAACACTTATAAATGTCCAATATCTTTGCTTACTTATCTCACTGAGTTTGAATGTGAAAAGCATATCTATCAACATAATAGCATCTTGGAATACAGTCTGGGAGAACAATAAATTGTTCTTTCTAGACTTTCTCCTCATTTCTCCTTGTTCCGTTTCTGTCGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>285 172 153 132 123 65 64 6</canonical_bands>
                <polymorphic_bands>285 196 172 153 123 65 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATGTCAGAAGTGTTACCATTG</pcr_primer_p1>
		<pcr_primer_p2>GTATCTGTGAGACACTGAAATGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATGTCAGAAGTGTTACCATTGCCTTTGGATACAGCAAGCAGTTACATGAAATACTGTAATAGAAGGGTCCCGTAAATGTACTGTCAGTTAAAATATTAGACTGCGCCGAAGGCGCACCAGCCAGCTGTTCGAAAAAAACAGTTTGGTTTGTTTAATGATCGAGAGTGATAGTAGCATGTCAATTTATATTATTGCTGGGCAAGTACAAAAAAAAACATTCCACGATCATTTCAGTGTCTCACAGATAC</canonical_amplicon>
		<polymorphic_amplicon>GAATGTCAGAAGTGTTACCATTGCCTTTGGATACAGCAAGCAGTTACATGAAATACTGTAATAGAAGGGTCCCGTAAATGTACTGTCAGTTRAAATATTAGACTGCGCCGAAGGCGCACCAGCCAGCTGTTCGAAAAAAACAGTTTGGTTTGTTTAATGATCGAGAGTGATAGTAGCATGTCAATTTATATTATTGCTGGGCAAGTACAAAAAAAAACATTCCACGATCATTTCAGTGTCTCACAGATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23487</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>973530</contig_pos>
        <strand></strand>
        <context>Traaatatta[G/C]actgcgccga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AAATACTGTAATAGAAGGGTCCCGTAAATGTACTGTCAGTTAAAATATTA</left_flank>
        <right_flank>ACTGCGCCGAAGGCGCACCAGCCAGCTGTTCGAAAAAAACAGTTTGGTTT</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAATCTGTCTTGTTTATTTTTCTGGTATTTCCCGTTAGTTATTGTCGTTTCATAACTATTCCAGTCCAGTTAAAAACCGAAAACCTTATAAATTGAGCGTTTTTTTCTAAATTTAGTCCACCCCCAGAAGGAGGTTAAAAAAATAAAAGCCTATGGGCCTCTATTAGAGGAAATACGGTATTTTTATAATTCGACTATTTACCATTACATGTGTTGAGAGGATACTACGAAGCTATTATTCTGATAATCACAGTTTATTAAAGAGGCTTTAGAAAAAATCATTTATTGAGTTTATGAATGGAATGTCAGAAGTGTTACCATTGCCTTTGGATACAGCAAGCAGTTACATGAAATACTGTAATAGAAGGGTCCCGTAAATGTACTGTCAGTTAAAATATTAGACTGCGCCGAAGGCGCACCAGCCAGCTGTTCGAAAAAAACAGTTTGGTTTGTTTAATGATCGAGAGTGATAGTAGCATGTCAATTTATATTATTGCTGGGCAAGTACAAAAAAAAACATTCCACGATCATTTCAGTGTCTCACAGATACCCAAATTTGAGGATTAGTGTGACTGGCTTCTTCCCTTGATCCGAACAATCTGCTTTTTAAAAGTGAGAGTCGTTCGTTGAACATAACCATAACAAATCTGTAACAAACGTATTCATATTTTTGAATTTCCGAGGTATACTGTACCCATCAATGGAATGAACACACTGCCAAACCAGTGTAACACTTATAAATGTCCAATATCTTTGCTTACTTATCTCACTGAGTTTGAATGTGAAAAGCATATCTATCAACATAATAGCATCTTGGAATACAGTCTGGGAGAACAATAAATTGTTCTTTCTAGACTTTCTCCTCATTTCTCCTTGTTCCGTTTCTGTCGATTTAAAAAAG</canonical>
            <polymorphic>TACAGTAGTTTCTCTAATAGAATATATACTATTTGATAGAATATACTCTATTTGAAGCCCACCCTGGCTGTGCATTTTTCTTTTCGGTTAGTGCAGACATAATCTGTCTTGTTTATTTTTCTGGTATTTCCCGTTAGTTATTGTCGTTTCATAACTATTCCAGTCCAGTTAAAAACCGAAAACCTTATAAATTGAGCGTTTTTTTCTAAATTTAGTCCACCCCCAGAAGGAGGTTAAAAAAATAAAAGCCTATGGGCCTCTATTAGAGGAAATACGGTATTTTTATAATTCGACTATTTACCATTACATGTGTTGAGAGGATACTACGAAGCTATTATTCTGATAATCACAGTTTATTAAAGAGGCTTTAGAAAAAATCATTTATTGAGTTTATGAATGGAATGTCAGAAGTGTTACCATTGCCTTTGGATACAGCAAGCAGTTACATGAAATACTGTAATAGAAGGGTCCCGTAAATGTACTGTCAGTTAAAATATTASACTGCGCCGAAGGCGCACCAGCCAGCTGTTCGAAAAAAACAGTTTGGTTTGTTTAATGATCGAGAGTGATAGTAGCATGTCAATTTATATTATTGCTGGGCAAGTACAAAAAAAAACATTCCACGATCATTTCAGTGTCTCACAGATACCCAAATTTGAGGATTAGTGTGACTGGCTTCTTCCCTTGATCCGAACAATCTGCTTTTTAAAAGTGAGAGTCGTTCGTTGAACATAACCATAACAAATCTGTAACAAACGTATTCATATTTTTGAATTTCCGAGGTATACTGTACCCATCAATGGAATGAACACACTGCCAAACCAGTGTAACACTTATAAATGTCCAATATCTTTGCTTACTTATCTCACTGAGTTTGAATGTGAAAAGCATATCTATCAACATAATAGCATCTTGGAATACAGTCTGGGAGAACAATAAATTGTTCTTTCTAGACTTTCTCCTCATTTCTCCTTGTTCCGTTTCTGTCGATTTAAAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATGTCAGAAGTGTTACCATTG</pcr_primer_p1>
		<pcr_primer_p2>GTATCTGTGAGACACTGAAATGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATGTCAGAAGTGTTACCATTGCCTTTGGATACAGCAAGCAGTTACATGAAATACTGTAATAGAAGGGTCCCGTAAATGTACTGTCAGTTAAAATATTAGACTGCGCCGAAGGCGCACCAGCCAGCTGTTCGAAAAAAACAGTTTGGTTTGTTTAATGATCGAGAGTGATAGTAGCATGTCAATTTATATTATTGCTGGGCAAGTACAAAAAAAAACATTCCACGATCATTTCAGTGTCTCACAGATAC</canonical_amplicon>
		<polymorphic_amplicon>GAATGTCAGAAGTGTTACCATTGCCTTTGGATACAGCAAGCAGTTACATGAAATACTGTAATAGAAGGGTCCCGTAAATGTACTGTCAGTTAAAATATTASACTGCGCCGAAGGCGCACCAGCCAGCTGTTCGAAAAAAACAGTTTGGTTTGTTTAATGATCGAGAGTGATAGTAGCATGTCAATTTATATTATTGCTGGGCAAGTACAAAAAAAAACATTCCACGATCATTTCAGTGTCTCACAGATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23488</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1015941</contig_pos>
        <strand>+</strand>
        <context>TCAAAAACAC[A/G]ACTATTACGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGACGTCAAACCCTACCAGTACCGCGACTACCATCAACATCAAAAACAC</left_flank>
        <right_flank>ACTATTACGGCGAAGGTGTTCACGACAGTCTAGGAGAGTCCGTAGACAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACTCATTTTTCTGTTTCGTTGTGATAAGAATGTGTTATCAGCTGTAATAAACGTTAGGAACGCCCCCACCTCCACAACACACACACCGACATTCCTCGTTTCACCTTCTAAAAATTCAGAAACAACATTGAAATCAACTATTGTCCCAGTAATTTCTGTTTTTCCTTTTCTACATTTCTAATCACGAATTTTGTTTGTTGGAGCTCCAAAATTTCTTCTTAAAAACTAAAAACGATCAGAATCTCTCACACTTTTTTTTTCAGATGAATTATTCTTCATAACCTTGCTAAAAACACCCCCTAACATTATTTATTACAGACAAAGTAGAAGGGTACCGCAAGGAGATTGCTCCAAGTCGCGAAAACGTCGACTTCGAACACTTGCGACGAACACCGCGAGATCCTCAACCCGAGAACGATTATCAGACGACAAGTGGTTCAGCGGGTGGAGACGTCAAACCCTACCAGTACCGCGACTACCATCAACATCAAAAACACGACTATTACGGCGAAGGTGTTCACGACAGTCTAGGAGAGTCCGTAGACAACAAAGACGAAACAATGAGAAAGTACGAAATGCAAGTGAGTATATTTTCAAAAATTGCTAAACATTTTTTTTCTAAATGTGGGACATCAGTCAATAAATACACTGTAAACCTATTATGATTGGATTTCCCTTAATCCGATTTTTGTTTGTAACCGAAAATCATACTGAACCTCCATGGCAAGTATTCGCGCAAAAGTTCGTTTGTCCTAAAACCTTTTCTCTGTGAAGACATGCCTAAAAAGTTGATTTATTCGATTTCTATGAAATCGGCCGCTGCTGCACCGACTCCCACTGTGAGAAAAATATCTCAAGAGCAGGTTCGACCCTATAATTAATCATCAGATGACTCATGGACTAGAGCCCCCTTCTTAAAGCCAGTCTGACTGGCCCAGTCAGCTGTTAGCCCATACACTCTCACTCTCCGAACAAAATTAATGTTTATTATCGGTGGT</canonical>
            <polymorphic>TGACTCATTTTTCTGTTTCGTTGTGATAAGAATGTGTTATCAGCTGTAATAAACGTTAGGAACGCCCCCACCTCCACAACACACACACCGACATTCCTCGTTTCACCTTCTAAAAATTCAGAAACAACATTGAAATCAACTATTGTCCCAGTAATTTCTGTTTTTCCTTTTCTACATTTCTAATCACGAATTTTGTTTGTTGGAGCTCCAAAATTTCTTCTTAAAAACTAAAAACGATCAGAATCTCTCACACTTTTTTTTTCAGATGAATTATTCTTCATAACCTTGCTAAAAACACCCCCTAACATTATTTATTACAGACAAAGTAGAAGGGTACCGCAAGGAGATTGCTCCAAGTCGCGAAAACGTCGACTTCGAACACTTGCGACGAACACCGCGAGATCCTCAACCCGAGAACGATTATCAGACGACAAGTGGTTCAGCGGGTGGAGACGTCAAACCCTACCAGTACCGCGACTACCATCAACATCAAAAACACRACTATTACGGCGAAGGTGTTCACGACAGTCTAGGAGAGTCCGTAGACAACAAAGACGAAACAATGAGAAAGTACGAAATGCAAGTGAGTATATTTTCAAAAATTGCTAAACATTTTTTTTCTAAATGTGGGACATCAGTCAATAAATACACTGTAAACCTATTATGATTGGATTTCCCTTAATCCGATTTTTGTTTGTAACCGAAAATCATACTGAACCTCCATGGCAAGTATTCGCGCAAAAGTTCGTTTGTCCTAAAACCTTTTCTCTGTGAAGACATGCCTAAAAAGTTGATTTATTCGATTTCTATGAAATCGGCCGCTGCTGCACCGACTCCCACTGTGAGAAAAATATCTCAAGAGCAGGTTCGACCCTATAATTAATCATCAGATGACTCATGGACTAGAGCCCCCTTCTTAAAGCCAGTCTGACTGGCCCAGTCAGCTGTTAGCCCATACACTCTCACTCTCCGAACAAAATTAATGTTTATTATCGGTGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGACGTCAAACCCTACCAGT</pcr_primer_p1>
		<pcr_primer_p2>TTACAAACAAAAATCGGATTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGACGTCAAACCCTACCAGTACCGCGACTACCATCAACATCAAAAACACGACTATTACGGCGAAGGTGTTCACGACAGTCTAGGAGAGTCCGTAGACAACAAAGACGAAACAATGAGAAAGTACGAAATGCAAGTGAGTATATTTTCAAAAATTGCTAAACATTTTTTTTCTAAATGTGGGACATCAGTCAATAAATACACTGTAAACCTATTATGATTGGATTTCCCTTAATCCGATTTTTGTTTGTAA</canonical_amplicon>
		<polymorphic_amplicon>AGACGTCAAACCCTACCAGTACCGCGACTACCATCAACATCAAAAACACRACTATTACGGCGAAGGTGTTCACGACAGTCTAGGAGAGTCCGTAGACAACAAAGACGAAACAATGAGAAAGTACGAAATGCAAGTGAGTATATTTTCAAAAATTGCTAAACATTTTTTTTCTAAATGTGGGACATCAGTCAATAAATACACTGTAAACCTATTATGATTGGATTTCCCTTAATCCGATTTTTGTTTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23489</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1124077</contig_pos>
        <strand>+</strand>
        <context>GAAACttttt[G/T]yattttataa</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTATTGTACAATATGTATTCAAATATCTAATAAAAGTTGGAAACTTTTT</left_flank>
        <right_flank>TATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTACAAGCCATGCCCAAGCAACATGTACCCAACTGACAAGTGTGAGCACTCTTGCCAAGCTGGATATCCACTTACCTACACACAAGATCTTCACTTCGGACAATCCGCCTACGCTGTATCCAAGAAGCCAGCTGAGATCCAGAAGGAAATCATGACCCACGGACCAGTAGAGGTTGCTTTCACCGTCTACGAGGACTTTGAGCACTATTCTGGAGGAGTCTATGTCCATACCGCTGGAGCCAGTCTCGGAGGACATGCCGTCAAGATGCTCGGATGGGGAGTTGACAACGGAACTCCATATTGGCTCTGTGCCAACTCATGGAACGAGGATTGGGGAGAGAACGGATATTTCCGTATCATTCGTGGAGTCAACGAGTGCGGAATTGAATCTGGAGTTGTTGGAGGAACACCAAAGTTGTAAACTCTCGAATGGTTGTAATTTTAATGTGTATTGTACAATATGTATTCAAATATCTAATAAAAGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAATTGTTCGCCTTACGGTATTTTCCTTTAGAGATCGGTCGGTTTCATACAAACATACCAGAGATGCATGGACAGTCCGTTGTCGGTTATCTGTTGAAAAAATTTCGTCCGTCCGTTTTCCGGAACGATTGAAATTGAAAATTTCTCCCGGAAGAGCTGAAAATGGTGGATGAGCTTTGTTTTGTTTCCATCTCTAATTCCGTCGTTAATCTTTTTTTTAATTGCTAGTGGATTTTGAAAAATGTGTT</canonical>
            <polymorphic>CACTACAAGCCATGCCCAAGCAACATGTACCCAACTGACAAGTGTGAGCACTCTTGCCAAGCTGGATATCCACTTACCTACACACAAGATCTTCACTTCGGACAATCCGCCTACGCTGTATCCAAGAAGCCAGCTGAGATCCAGAAGGAAATCATGACCCACGGACCAGTAGAGGTTGCTTTCACCGTCTACGAGGACTTTGAGCACTATTCTGGAGGAGTCTATGTCCATACCGCTGGAGCCAGTCTCGGAGGACATGCCGTCAAGATGCTCGGATGGGGAGTTGACAACGGAACTCCATATTGGCTCTGTGCCAACTCATGGAACGAGGATTGGGGAGAGAACGGATATTTCCGTATCATTCGTGGAGTCAACGAGTGCGGAATTGAATCTGGAGTTGTTGGAGGAACACCAAAGTTGTAAACTCTCGAATGGTTGTAATTTTAATGTGTATTGTACAATATGTATTCAAATATCTAATAAAAGTTGGAAACTTTTTKTATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAATTGTTCGCCTTACGGTATTTTCCTTTAGAGATCGGTCGGTTTCATACAAACATACCAGAGATGCATGGACAGTCCGTTGTCGGTTATCTGTTGAAAAAATTTCGTCCGTCCGTTTTCCGGAACGATTGAAATTGAAAATTTCTCCCGGAAGAGCTGAAAATGGTGGATGAGCTTTGTTTTGTTTCCATCTCTAATTCCGTCGTTAATCTTTTTTTTAATTGCTAGTGGATTTTGAAAAATGTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTTGTAATTTTAATGTGTATTGT</pcr_primer_p1>
		<pcr_primer_p2>TTTATCAATTACCATAACGCTCT</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>TGGTTGTAATTTTAATGTGTATTGTACAATATGTATTCAAATATCTAATAAAAGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAA</canonical_amplicon>
		<polymorphic_amplicon>TGGTTGTAATTTTAATGTGTATTGTACAATATGTATTCAAATATCTAATAAAAGTTGGAAACTTTTTKTATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23490</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1124078</contig_pos>
        <strand></strand>
        <context>AAACtttttk[T/C]attttataaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTATTGTACAATATGTATTCAAATATCTAATAAAAGTTGGAAACTTTTTA</left_flank>
        <right_flank>ATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAAC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTACAAGCCATGCCCAAGCAACATGTACCCAACTGACAAGTGTGAGCACTCTTGCCAAGCTGGATATCCACTTACCTACACACAAGATCTTCACTTCGGACAATCCGCCTACGCTGTATCCAAGAAGCCAGCTGAGATCCAGAAGGAAATCATGACCCACGGACCAGTAGAGGTTGCTTTCACCGTCTACGAGGACTTTGAGCACTATTCTGGAGGAGTCTATGTCCATACCGCTGGAGCCAGTCTCGGAGGACATGCCGTCAAGATGCTCGGATGGGGAGTTGACAACGGAACTCCATATTGGCTCTGTGCCAACTCATGGAACGAGGATTGGGGAGAGAACGGATATTTCCGTATCATTCGTGGAGTCAACGAGTGCGGAATTGAATCTGGAGTTGTTGGAGGAACACCAAAGTTGTAAACTCTCGAATGGTTGTAATTTTAATGTGTATTGTACAATATGTATTCAAATATCTAATAAAAGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAATTGTTCGCCTTACGGTATTTTCCTTTAGAGATCGGTCGGTTTCATACAAACATACCAGAGATGCATGGACAGTCCGTTGTCGGTTATCTGTTGAAAAAATTTCGTCCGTCCGTTTTCCGGAACGATTGAAATTGAAAATTTCTCCCGGAAGAGCTGAAAATGGTGGATGAGCTTTGTTTTGTTTCCATCTCTAATTCCGTCGTTAATCTTTTTTTTAATTGCTAGTGGATTTTGAAAAATGTGTTC</canonical>
            <polymorphic>ACTACAAGCCATGCCCAAGCAACATGTACCCAACTGACAAGTGTGAGCACTCTTGCCAAGCTGGATATCCACTTACCTACACACAAGATCTTCACTTCGGACAATCCGCCTACGCTGTATCCAAGAAGCCAGCTGAGATCCAGAAGGAAATCATGACCCACGGACCAGTAGAGGTTGCTTTCACCGTCTACGAGGACTTTGAGCACTATTCTGGAGGAGTCTATGTCCATACCGCTGGAGCCAGTCTCGGAGGACATGCCGTCAAGATGCTCGGATGGGGAGTTGACAACGGAACTCCATATTGGCTCTGTGCCAACTCATGGAACGAGGATTGGGGAGAGAACGGATATTTCCGTATCATTCGTGGAGTCAACGAGTGCGGAATTGAATCTGGAGTTGTTGGAGGAACACCAAAGTTGTAAACTCTCGAATGGTTGTAATTTTAATGTGTATTGTACAATATGTATTCAAATATCTAATAAAAGTTGGAAACTTTTTAYATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAATTGTTCGCCTTACGGTATTTTCCTTTAGAGATCGGTCGGTTTCATACAAACATACCAGAGATGCATGGACAGTCCGTTGTCGGTTATCTGTTGAAAAAATTTCGTCCGTCCGTTTTCCGGAACGATTGAAATTGAAAATTTCTCCCGGAAGAGCTGAAAATGGTGGATGAGCTTTGTTTTGTTTCCATCTCTAATTCCGTCGTTAATCTTTTTTTTAATTGCTAGTGGATTTTGAAAAATGTGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTTGTAATTTTAATGTGTATTGT</pcr_primer_p1>
		<pcr_primer_p2>TTTATCAATTACCATAACGCTCT</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>TGGTTGTAATTTTAATGTGTATTGTACAATATGTATTCAAATATCTAATAAAAGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAA</canonical_amplicon>
		<polymorphic_amplicon>TGGTTGTAATTTTAATGTGTATTGTACAATATGTATTCAAATATCTAATAAAAGTTGGAAACTTTTTAYATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23491</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1124174</contig_pos>
        <strand></strand>
        <context>gatcctatga[C/G]agatatagaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGA</left_flank>
        <right_flank>AGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGACAATCCGCCTACGCTGTATCCAAGAAGCCAGCTGAGATCCAGAAGGAAATCATGACCCACGGACCAGTAGAGGTTGCTTTCACCGTCTACGAGGACTTTGAGCACTATTCTGGAGGAGTCTATGTCCATACCGCTGGAGCCAGTCTCGGAGGACATGCCGTCAAGATGCTCGGATGGGGAGTTGACAACGGAACTCCATATTGGCTCTGTGCCAACTCATGGAACGAGGATTGGGGAGAGAACGGATATTTCCGTATCATTCGTGGAGTCAACGAGTGCGGAATTGAATCTGGAGTTGTTGGAGGAACACCAAAGTTGTAAACTCTCGAATGGTTGTAATTTTAATGTGTATTGTACAATATGTATTCAAATATCTAATAAAAGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAATTGTTCGCCTTACGGTATTTTCCTTTAGAGATCGGTCGGTTTCATACAAACATACCAGAGATGCATGGACAGTCCGTTGTCGGTTATCTGTTGAAAAAATTTCGTCCGTCCGTTTTCCGGAACGATTGAAATTGAAAATTTCTCCCGGAAGAGCTGAAAATGGTGGATGAGCTTTGTTTTGTTTCCATCTCTAATTCCGTCGTTAATCTTTTTTTTAATTGCTAGTGGATTTTGAAAAATGTGTTCGTTGTCCGGCTGTTGTCCGCCAGAAAAGTGTGTCTTTGCTTGTTGTCCGAACAATTAAAAAAAAACAGAAAAATAAAAAATATTGGGAAAATAAAA</canonical>
            <polymorphic>TCGGACAATCCGCCTACGCTGTATCCAAGAAGCCAGCTGAGATCCAGAAGGAAATCATGACCCACGGACCAGTAGAGGTTGCTTTCACCGTCTACGAGGACTTTGAGCACTATTCTGGAGGAGTCTATGTCCATACCGCTGGAGCCAGTCTCGGAGGACATGCCGTCAAGATGCTCGGATGGGGAGTTGACAACGGAACTCCATATTGGCTCTGTGCCAACTCATGGAACGAGGATTGGGGAGAGAACGGATATTTCCGTATCATTCGTGGAGTCAACGAGTGCGGAATTGAATCTGGAGTTGTTGGAGGAACACCAAAGTTGTAAACTCTCGAATGGTTGTAATTTTAATGTGTATTGTACAATATGTATTCAAATATCTAATAAAAGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGASAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAATTGTTCGCCTTACGGTATTTTCCTTTAGAGATCGGTCGGTTTCATACAAACATACCAGAGATGCATGGACAGTCCGTTGTCGGTTATCTGTTGAAAAAATTTCGTCCGTCCGTTTTCCGGAACGATTGAAATTGAAAATTTCTCCCGGAAGAGCTGAAAATGGTGGATGAGCTTTGTTTTGTTTCCATCTCTAATTCCGTCGTTAATCTTTTTTTTAATTGCTAGTGGATTTTGAAAAATGTGTTCGTTGTCCGGCTGTTGTCCGCCAGAAAAGTGTGTCTTTGCTTGTTGTCCGAACAATTAAAAAAAAACAGAAAAATAAAAAATATTGGGAAAATAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAATATCTAATAAAAGTTGGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTATCAATTACCATAACGCTCT</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>TCAAATATCTAATAAAAGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAA</canonical_amplicon>
		<polymorphic_amplicon>TCAAATATCTAATAAAAGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGASAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23492</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1124188</contig_pos>
        <strand></strand>
        <context>tatagaaaat[G/C]tgttaactaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAAT</left_flank>
        <right_flank>TGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTG</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACGCTGTATCCAAGAAGCCAGCTGAGATCCAGAAGGAAATCATGACCCACGGACCAGTAGAGGTTGCTTTCACCGTCTACGAGGACTTTGAGCACTATTCTGGAGGAGTCTATGTCCATACCGCTGGAGCCAGTCTCGGAGGACATGCCGTCAAGATGCTCGGATGGGGAGTTGACAACGGAACTCCATATTGGCTCTGTGCCAACTCATGGAACGAGGATTGGGGAGAGAACGGATATTTCCGTATCATTCGTGGAGTCAACGAGTGCGGAATTGAATCTGGAGTTGTTGGAGGAACACCAAAGTTGTAAACTCTCGAATGGTTGTAATTTTAATGTGTATTGTACAATATGTATTCAAATATCTAATAAAAGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAATTGTTCGCCTTACGGTATTTTCCTTTAGAGATCGGTCGGTTTCATACAAACATACCAGAGATGCATGGACAGTCCGTTGTCGGTTATCTGTTGAAAAAATTTCGTCCGTCCGTTTTCCGGAACGATTGAAATTGAAAATTTCTCCCGGAAGAGCTGAAAATGGTGGATGAGCTTTGTTTTGTTTCCATCTCTAATTCCGTCGTTAATCTTTTTTTTAATTGCTAGTGGATTTTGAAAAATGTGTTCGTTGTCCGGCTGTTGTCCGCCAGAAAAGTGTGTCTTTGCTTGTTGTCCGAACAATTAAAAAAAAACAGAAAAATAAAAAATATTGGGAAAATAAAATAAAAATTCAAGGG</canonical>
            <polymorphic>TACGCTGTATCCAAGAAGCCAGCTGAGATCCAGAAGGAAATCATGACCCACGGACCAGTAGAGGTTGCTTTCACCGTCTACGAGGACTTTGAGCACTATTCTGGAGGAGTCTATGTCCATACCGCTGGAGCCAGTCTCGGAGGACATGCCGTCAAGATGCTCGGATGGGGAGTTGACAACGGAACTCCATATTGGCTCTGTGCCAACTCATGGAACGAGGATTGGGGAGAGAACGGATATTTCCGTATCATTCGTGGAGTCAACGAGTGCGGAATTGAATCTGGAGTTGTTGGAGGAACACCAAAGTTGTAAACTCTCGAATGGTTGTAATTTTAATGTGTATTGTACAATATGTATTCAAATATCTAATAAAAGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATSTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAATTGTTCGCCTTACGGTATTTTCCTTTAGAGATCGGTCGGTTTCATACAAACATACCAGAGATGCATGGACAGTCCGTTGTCGGTTATCTGTTGAAAAAATTTCGTCCGTCCGTTTTCCGGAACGATTGAAATTGAAAATTTCTCCCGGAAGAGCTGAAAATGGTGGATGAGCTTTGTTTTGTTTCCATCTCTAATTCCGTCGTTAATCTTTTTTTTAATTGCTAGTGGATTTTGAAAAATGTGTTCGTTGTCCGGCTGTTGTCCGCCAGAAAAGTGTGTCTTTGCTTGTTGTCCGAACAATTAAAAAAAAACAGAAAAATAAAAAATATTGGGAAAATAAAATAAAAATTCAAGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>242 115 107 78 62 54 50 47 40 36 33 31 23 22 21 16 13 8 2</canonical_bands>
                <polymorphic_bands>242 115 107 78 68 62 54 50 40 36 33 31 23 22 16 13 8 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAATATCTAATAAAAGTTGGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTATCAATTACCATAACGCTCT</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>TCAAATATCTAATAAAAGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAA</canonical_amplicon>
		<polymorphic_amplicon>TCAAATATCTAATAAAAGTTGGAAACTTTTTATATTTTATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATSTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23493</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1124583</contig_pos>
        <strand>+</strand>
        <context>GTGTTCGTTG[A/T]CCGGCTGTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGTTAATCTTTTTTTTAATTGCTAGTGGATTTTGAAAAATGTGTTCGTTG</left_flank>
        <right_flank>CCGGCTGTTGTCCGCCAGAAAAGTGTGTCTTTGCTTGTTGTCCGAACAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAATTGTTCGCCTTACGGTATTTTCCTTTAGAGATCGGTCGGTTTCATACAAACATACCAGAGATGCATGGACAGTCCGTTGTCGGTTATCTGTTGAAAAAATTTCGTCCGTCCGTTTTCCGGAACGATTGAAATTGAAAATTTCTCCCGGAAGAGCTGAAAATGGTGGATGAGCTTTGTTTTGTTTCCATCTCTAATTCCGTCGTTAATCTTTTTTTTAATTGCTAGTGGATTTTGAAAAATGTGTTCGTTGTCCGGCTGTTGTCCGCCAGAAAAGTGTGTCTTTGCTTGTTGTCCGAACAATTAAAAAAAAACAGAAAAATAAAAAATATTGGGAAAATAAAATAAAAATTCAAGGGTGGGAGACAGGAGATTTTTAGGAAGAATTTTGGAGCCAGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATATTGTACAACGCTTAATACAACGCTTAATATTAATATTACATTAATGTCACTCTACGTACACCGGTCGTCCTCACCCTTATGTATGCAATCGGGAGGCCTTTTTACCTTTGCCCGCGTGGCTCAGTCGGTGGCGGCGCCGTACCCTCAATCCTCGCCTCCACAAGTTCAACTCCCCGAGGGGCATATTTGAACAGAATTGCGATAACATTATTTTTCTCATGTCCCCCCGCCTTTAAAGCCTTTTTCTAATCAATTGAAGATATTATTGAAGTATTAGCATAACAAGAAAACTATCGAAACTCTAACACTTGAAAAAAG</canonical>
            <polymorphic>ATAAAATTTGGGTTCTGTTAAAGCGAAATTCTTGAGAAGGTAAACCTGTAAAAAGTTGCACTTCGAGCTCAATTATGTCGGATCCTATGACAGATATAGAAAATGTGTTAACTAACAAAATGTTGGTGCTAATGTGATAAATGTTTCATTACTTGACAGGTTTTAGGCATCACTTATGGGAGCCGAAATAAATATGCTCAAAGTCCGTATAAAATGGGCTTCTATCAGAGCGTTATGGTAATTGATAAATTGTTCGCCTTACGGTATTTTCCTTTAGAGATCGGTCGGTTTCATACAAACATACCAGAGATGCATGGACAGTCCGTTGTCGGTTATCTGTTGAAAAAATTTCGTCCGTCCGTTTTCCGGAACGATTGAAATTGAAAATTTCTCCCGGAAGAGCTGAAAATGGTGGATGAGCTTTGTTTTGTTTCCATCTCTAATTCCGTCGTTAATCTTTTTTTTAATTGCTAGTGGATTTTGAAAAATGTGTTCGTTGWCCGGCTGTTGTCCGCCAGAAAAGTGTGTCTTTGCTTGTTGTCCGAACAATTAAAAAAAAACAGAAAAATAAAAAATATTGGGAAAATAAAATAAAAATTCAAGGGTGGGAGACAGGAGATTTTTAGGAAGAATTTTGGAGCCAGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATATTGTACAACGCTTAATACAACGCTTAATATTAATATTACATTAATGTCACTCTACGTACACCGGTCGTCCTCACCCTTATGTATGCAATCGGGAGGCCTTTTTACCTTTGCCCGCGTGGCTCAGTCGGTGGCGGCGCCGTACCCTCAATCCTCGCCTCCACAAGTTCAACTCCCCGAGGGGCATATTTGAACAGAATTGCGATAACATTATTTTTCTCATGTCCCCCCGCCTTTAAAGCCTTTTTCTAATCAATTGAAGATATTATTGAAGTATTAGCATAACAAGAAAACTATCGAAACTCTAACACTTGAAAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTGTTTTGTTTCCATCTCTAA</pcr_primer_p1>
		<pcr_primer_p2>CTCCAAAATTCTTCCTAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>220</pcr_amplicon_size>
		<canonical_amplicon>CTTTGTTTTGTTTCCATCTCTAATTCCGTCGTTAATCTTTTTTTTAATTGCTAGTGGATTTTGAAAAATGTGTTCGTTGTCCGGCTGTTGTCCGCCAGAAAAGTGTGTCTTTGCTTGTTGTCCGAACAATTAAAAAAAAACAGAAAAATAAAAAATATTGGGAAAATAAAATAAAAATTCAAGGGTGGGAGACAGGAGATTTTTAGGAAGAATTTTGGAG</canonical_amplicon>
		<polymorphic_amplicon>CTTTGTTTTGTTTCCATCTCTAATTCCGTCGTTAATCTTTTTTTTAATTGCTAGTGGATTTTGAAAAATGTGTTCGTTGWCCGGCTGTTGTCCGCCAGAAAAGTGTGTCTTTGCTTGTTGTCCGAACAATTAAAAAAAAACAGAAAAATAAAAAATATTGGGAAAATAAAATAAAAATTCAAGGGTGGGAGACAGGAGATTTTTAGGAAGAATTTTGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23494</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1255102</contig_pos>
        <strand>+</strand>
        <context>TGTAGTTGCC[A/G]AAAAAAATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATAGAAAAAGGATGCCACCACATTAACCTAATCCAATGTGTAGTTGCC</left_flank>
        <right_flank>AAAAAAATTGAAAACAGTTCTTTGGCAAAATTTTCAATTAATTTAATTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCTTTCTTTTTTATGCAAAAAGGCGAACCTTGTCAAAGTGCGGTGTTCTGGATGCGTTCACTGCGTTTAAATGGTTTACAAGAGATATAAAAAGGGCTGTTTGTTTTCATCAAACACAATTAAAATCGGAATTGACGATTTTACGAGCAGAACTTATTGAAATGTTCTTCAAAGAAAAAGATTGCCGTTTACTGTAGTTTAAAGGAGCATGCATCGTTATGTGAAAGTCTCACAGCGCTACAGTACTTACTTTTCTGCAAAGTTTAGGCCGAAGAAAAACTTCTGAAGAATCTAAAGCTGTAGAAACAAAAAAAGTAAACATGGTAAATTATTAAAAAGAACGAAAGCTCTAAAATTTGAGAAGCTGAACAGAACTGGAAAATAAAAATTTTTATTGTGCGATTTTTCATCGATGAAACCAACTGCAGGTGAGAAACGGGGAAACATTGAATAGAAAAAGGATGCCACCACATTAACCTAATCCAATGTGTAGTTGCCAAAAAAAATTGAAAACAGTTCTTTGGCAAAATTTTCAATTAATTTAATTCATGAATGTTCGGAATGGTCTTTTCAGAATTTTTTCGGAATATCGAAAGTTACGAGTTTCAGTATTTCGAAATTTCGGAATGCTCCGATTTGAAATATCGAAAAAAATTTGGTGAAAAGTTGACAAACAGATTTCAAAAAATCAAAAAAAAATCAAAAGTATTCAAAAGTACTGTATTCAAAAGTATTCAAAAGTAAAGTAAAAATCAAAAGTACTCGAGACCCAAATACGAACTTTTCTTGTGCGTCTTTGTCATACCGTCGTCCAAAAAAAATTTTCTATTTCCGAAAAAAGCCTCGGAAATAAATATTCGGACGGAATTTGATTCCAAAAATTGTTACAATTTTCTGAATTTCGAATTCCGTTCCGAACGTCCCTGGGTTAAAGTATTCGTCAATTTTTCAAACCTCGAAACACTTGAAGACTGTTTAATAAAAAAAAATTGAATGAGA</canonical>
            <polymorphic>CGCTTTCTTTTTTATGCAAAAAGGCGAACCTTGTCAAAGTGCGGTGTTCTGGATGCGTTCACTGCGTTTAAATGGTTTACAAGAGATATAAAAAGGGCTGTTTGTTTTCATCAAACACAATTAAAATCGGAATTGACGATTTTACGAGCAGAACTTATTGAAATGTTCTTCAAAGAAAAAGATTGCCGTTTACTGTAGTTTAAAGGAGCATGCATCGTTATGTGAAAGTCTCACAGCGCTACAGTACTTACTTTTCTGCAAAGTTTAGGCCGAAGAAAAACTTCTGAAGAATCTAAAGCTGTAGAAACAAAAAAAGTAAACATGGTAAATTATTAAAAAGAACGAAAGCTCTAAAATTTGAGAAGCTGAACAGAACTGGAAAATAAAAATTTTTATTGTGCGATTTTTCATCGATGAAACCAACTGCAGGTGAGAAACGGGGAAACATTGAATAGAAAAAGGATGCCACCACATTAACCTAATCCAATGTGTAGTTGCCRAAAAAAATTGAAAACAGTTCTTTGGCAAAATTTTCAATTAATTTAATTCATGAATGTTCGGAATGGTCTTTTCAGAATTTTTTCGGAATATCGAAAGTTACGAGTTTCAGTATTTCGAAATTTCGGAATGCTCCGATTTGAAATATCGAAAAAAATTTGGTGAAAAGTTGACAAACAGATTTCAAAAAATCAAAAAAAAATCAAAAGTATTCAAAAGTACTGTATTCAAAAGTATTCAAAAGTAAAGTAAAAATCAAAAGTACTCGAGACCCAAATACGAACTTTTCTTGTGCGTCTTTGTCATACCGTCGTCCAAAAAAAATTTTCTATTTCCGAAAAAAGCCTCGGAAATAAATATTCGGACGGAATTTGATTCCAAAAATTGTTACAATTTTCTGAATTTCGAATTCCGTTCCGAACGTCCCTGGGTTAAAGTATTCGTCAATTTTTCAAACCTCGAAACACTTGAAGACTGTTTAATAAAAAAAAATTGAATGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGAAACATTGAATAGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>GAAAAATTGACGAATACTTTAACC</pcr_primer_p2>
		<pcr_amplicon_size>512</pcr_amplicon_size>
		<canonical_amplicon>GGGAAACATTGAATAGAAAAAGGATGCCACCACATTAACCTAATCCAATGTGTAGTTGCCAAAAAAAATTGAAAACAGTTCTTTGGCAAAATTTTCAATTAATTTAATTCATGAATGTTCGGAATGGTCTTTTCAGAATTTTTTCGGAATATCGAAAGTTACGAGTTTCAGTATTTCGAAATTTCGGAATGCTCCGATTTGAAATATCGAAAAAAATTTGGTGAAAAGTTGACAAACAGATTTCAAAAAATCAAAAAAAAATCAAAAGTATTCAAAAGTACTGTATTCAAAAGTATTCAAAAGTAAAGTAAAAATCAAAAGTACTCGAGACCCAAATACGAACTTTTCTTGTGCGTCTTTGTCATACCGTCGTCCAAAAAAAATTTTCTATTTCCGAAAAAAGCCTCGGAAATAAATATTCGGACGGAATTTGATTCCAAAAATTGTTACAATTTTCTGAATTTCGAATTCCGTTCCGAACGTCCCTGGGTTAAAGTATTCGTCAATTTTTC</canonical_amplicon>
		<polymorphic_amplicon>GGGAAACATTGAATAGAAAAAGGATGCCACCACATTAACCTAATCCAATGTGTAGTTGCCRAAAAAAATTGAAAACAGTTCTTTGGCAAAATTTTCAATTAATTTAATTCATGAATGTTCGGAATGGTCTTTTCAGAATTTTTTCGGAATATCGAAAGTTACGAGTTTCAGTATTTCGAAATTTCGGAATGCTCCGATTTGAAATATCGAAAAAAATTTGGTGAAAAGTTGACAAACAGATTTCAAAAAATCAAAAAAAAATCAAAAGTATTCAAAAGTACTGTATTCAAAAGTATTCAAAAGTAAAGTAAAAATCAAAAGTACTCGAGACCCAAATACGAACTTTTCTTGTGCGTCTTTGTCATACCGTCGTCCAAAAAAAATTTTCTATTTCCGAAAAAAGCCTCGGAAATAAATATTCGGACGGAATTTGATTCCAAAAATTGTTACAATTTTCTGAATTTCGAATTCCGTTCCGAACGTCCCTGGGTTAAAGTATTCGTCAATTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23495</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1255886</contig_pos>
        <strand></strand>
        <context>ttacaggttt[C/T]acagtAAGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATAAATTGACTCGAATTTTAAAGTCAGGGGGCCCTTCTATTACAGGTTT</left_flank>
        <right_flank>ACAGTAAGTAAGGCAGAGATATCCGGATTCCGGATGCCGCGAATTCAGGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTGTGCGTCTTTGTCATACCGTCGTCCAAAAAAAATTTTCTATTTCCGAAAAAAGCCTCGGAAATAAATATTCGGACGGAATTTGATTCCAAAAATTGTTACAATTTTCTGAATTTCGAATTCCGTTCCGAACGTCCCTGGGTTAAAGTATTCGTCAATTTTTCAAACCTCGAAACACTTGAAGACTGTTTAATAAAAAAAAATTGAATGAGAATATTGAAGATCTTAATTTTATATAGGTCCCATTCCTTGAACAATCGCGATAAAAATTAGAATGAAACTTTCAGAGCTATACCGTAAAACCTGTGATAGAAGGACCACTTTGACCTGATTTATCTCGATTACTGTAAGAGATATCGAAAATGTGTCAAATTATATAATGTTTGTATTTATGTGATAAACAAATTATCAGTTGACAACGTTTTCATATTTTTGACTGGAACCGAGATAAATTGACTCGAATTTTAAAGTCAGGGGGCCCTTCTATTACAGGTTTCACAGTAAGTAAGGCAGAGATATCCGGATTCCGGATGCCGCGAATTCAGGCAGGGTTCCGAGAAAATAAGCTCATTCCGGATTCCGTATGCTGGATTCCGACCATCGGAAAAGTCATTGACATTTCTGGAGGGAGGTCCAAATACCATAAGATACAGTAACTCAATCCCACAAACTCACCGGTTCTTCAACACCACCACCGTCGTTTTCCATGATGGTAAAAGTTCAAATAGTGAAAGAATATATTTGAGAAGACTGTTTGAATTCAGAAAAAAGTTCTAACGACTTCTGGGAAGAATACGAAAGAAGGGCGGAACGAAACGAAACGACCTATCCAAAAATATAGGTCTCCTCGTGCCTTGGCAGTAAAAAAATCGTGTGCTGCGAATGTTGTCCCAATAGAAAGAAGAGGGGACAAACCACAACAATTCTTATTCTTCTTCCTTCGTTCTCTCCTTGTTTCGTGTTCCGTAAATCGAAATATCAAAATCAAAATATTGTG</canonical>
            <polymorphic>TTCTTGTGCGTCTTTGTCATACCGTCGTCCAAAAAAAATTTTCTATTTCCGAAAAAAGCCTCGGAAATAAATATTCGGACGGAATTTGATTCCAAAAATTGTTACAATTTTCTGAATTTCGAATTCCGTTCCGAACGTCCCTGGGTTAAAGTATTCGTCAATTTTTCAAACCTCGAAACACTTGAAGACTGTTTAATAAAAAAAAATTGAATGAGAATATTGAAGATCTTAATTTTATATAGGTCCCATTCCTTGAACAATCGCGATAAAAATTAGAATGAAACTTTCAGAGCTATACCGTAAAACCTGTGATAGAAGGACCACTTTGACCTGATTTATCTCGATTACTGTAAGAGATATCGAAAATGTGTCAAATTATATAATGTTTGTATTTATGTGATAAACAAATTATCAGTTGACAACGTTTTCATATTTTTGACTGGAACCGAGATAAATTGACTCGAATTTTAAAGTCAGGGGGCCCTTCTATTACAGGTTTYACAGTAAGTAAGGCAGAGATATCCGGATTCCGGATGCCGCGAATTCAGGCAGGGTTCCGAGAAAATAAGCTCATTCCGGATTCCGTATGCTGGATTCCGACCATCGGAAAAGTCATTGACATTTCTGGAGGGAGGTCCAAATACCATAAGATACAGTAACTCAATCCCACAAACTCACCGGTTCTTCAACACCACCACCGTCGTTTTCCATGATGGTAAAAGTTCAAATAGTGAAAGAATATATTTGAGAAGACTGTTTGAATTCAGAAAAAAGTTCTAACGACTTCTGGGAAGAATACGAAAGAAGGGCGGAACGAAACGAAACGACCTATCCAAAAATATAGGTCTCCTCGTGCCTTGGCAGTAAAAAAATCGTGTGCTGCGAATGTTGTCCCAATAGAAAGAAGAGGGGACAAACCACAACAATTCTTATTCTTCTTCCTTCGTTCTCTCCTTGTTTCGTGTTCCGTAAATCGAAATATCAAAATCAAAATATTGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>172 168 131 122 102 47 44 41 36 36 29 22 14 12 8 8 3 3 2 0</canonical_bands>
                <polymorphic_bands>270 172 131 122 47 44 41 36 36 29 22 14 12 8 8 3 3 2 0</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGATAAAAATTAGAATGAAACTT</pcr_primer_p1>
		<pcr_primer_p2>TGTATCTTATGGTATTTGGACCT</pcr_primer_p2>
		<pcr_amplicon_size>393</pcr_amplicon_size>
		<canonical_amplicon>GCGATAAAAATTAGAATGAAACTTTCAGAGCTATACCGTAAAACCTGTGATAGAAGGACCACTTTGACCTGATTTATCTCGATTACTGTAAGAGATATCGAAAATGTGTCAAATTATATAATGTTTGTATTTATGTGATAAACAAATTATCAGTTGACAACGTTTTCATATTTTTGACTGGAACCGAGATAAATTGACTCGAATTTTAAAGTCAGGGGGCCCTTCTATTACAGGTTTCACAGTAAGTAAGGCAGAGATATCCGGATTCCGGATGCCGCGAATTCAGGCAGGGTTCCGAGAAAATAAGCTCATTCCGGATTCCGTATGCTGGATTCCGACCATCGGAAAAGTCATTGACATTTCTGGAGGGAGGTCCAAATACCATAAGATACA</canonical_amplicon>
		<polymorphic_amplicon>GCGATAAAAATTAGAATGAAACTTTCAGAGCTATACCGTAAAACCTGTGATAGAAGGACCACTTTGACCTGATTTATCTCGATTACTGTAAGAGATATCGAAAATGTGTCAAATTATATAATGTTTGTATTTATGTGATAAACAAATTATCAGTTGACAACGTTTTCATATTTTTGACTGGAACCGAGATAAATTGACTCGAATTTTAAAGTCAGGGGGCCCTTCTATTACAGGTTTYACAGTAAGTAAGGCAGAGATATCCGGATTCCGGATGCCGCGAATTCAGGCAGGGTTCCGAGAAAATAAGCTCATTCCGGATTCCGTATGCTGGATTCCGACCATCGGAAAAGTCATTGACATTTCTGGAGGGAGGTCCAAATACCATAAGATACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23502</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1354353</contig_pos>
        <strand>-</strand>
        <context>GTTTTCTGAA[C/T]TACAAGCtgg</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGATTCATAAATTCGCTGAAAATGATAATTTGAAGGACAAGTTTTCTGAA</left_flank>
        <right_flank>TACAAGCTGGCGCACAGTAACCCGGACTGATAAAAACGAGTATAACTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGCAATGCTTCAGGAGAATCGAATCCTTGAGAAACGACTAATTGCGTGTCGAAATCATTCAATGCTTGTTACCACTTTTATCTAGATTATTAGCCCCCATTTTGATCATACCAGGTGTTCTTTATCTCTCTGTCCCAGTATTTCATTTGTTGCCGTTTTAGAAAATCATCAGTTTTATGTGTGTACAATATGATTGAATCTAAATATATCTCACCAGTTATAAATAAACAATTATATGAAAATTTTTTTTGTTATTCAACAGATTTGCGGCGGTCCAACACTGACAACTTCTGATTTCTTCTTCTGAAACTCAAAACGCTTCCAAACTTCCAAACTACAACAGAAGACAGCTTTAGCGGCATTTCTGTATTGAGAAGACATGTAAAAACAGATGAACATGTGGGTAGAAGTGTCCAATGTTAAACCAAATGAAAATAGCATTGTGAAAAGATTCATAAATTCGCTGAAAATGATAATTTGAAGGACAAGTTTTCTGAAGTACAAGCTGGCGCACAGTAACCCGGACTGATAAAAACGAGTATAACTTTAGACATACATAAGTATCTTGGGATCAAAAAAATTGGGAGAAATATAGTTTTACTTCTGATTCGAAGCTACTGAAATTTTCGAACCGATTCTTCAAGTCCAGGTATTGCAATGATTGTCCAAAAATGATGTTGTGTTTCTTGCTCGCCGTTTTGATTTTTATGAGTTAAAGCAACTTTGATAAGCGAGAGCTCAGCTAAATTTGTGTACCTGTCGAGTGGTTTGCTTTGTAAAATAACCAATTTTCAAGGAAAACGTAAATGACTATTATACTGATTAGCACCTAGAAAGCTCGAAGTTGATCGAACAATTTAAGATTTGGCCAGATTACTGAGTAATCTGTTTAACTTTCGCACTCCAAATTTGAGTTCAGTACAGCGCTTTATTCAAATCTTATGGTTGCACAAACTTTAGTCCGGGTAACTATGCTCTATACTGTAAAACCGTACACGA</canonical>
            <polymorphic>ATGCAATGCTTCAGGAGAATCGAATCCTTGAGAAACGACTAATTGCGTGTCGAAATCATTCAATGCTTGTTACCACTTTTATCTAGATTATTAGCCCCCATTTTGATCATACCAGGTGTTCTTTATCTCTCTGTCCCAGTATTTCATTTGTTGCCGTTTTAGAAAATCATCAGTTTTATGTGTGTACAATATGATTGAATCTAAATATATCTCACCAGTTATAAATAAACAATTATATGAAAATTTTTTTTGTTATTCAACAGATTTGCGGCGGTCCAACACTGACAACTTCTGATTTCTTCTTCTGAAACTCAAAACGCTTCCAAACTTCCAAACTACAACAGAAGACAGCTTTAGCGGCATTTCTGTATTGAGAAGACATGTAAAAACAGATGAACATGTGGGTAGAAGTGTCCAATGTTAAACCAAATGAAAATAGCATTGTGAAAAGATTCATAAATTCGCTGAAAATGATAATTTGAAGGACAAGTTTTCTGAAYTACAAGCTGGCGCACAGTAACCCGGACTGATAAAAACGAGTATAACTTTAGACATACATAAGTATCTTGGGATCAAAAAAATTGGGAGAAATATAGTTTTACTTCTGATTCGAAGCTACTGAAATTTTCGAACCGATTCTTCAAGTCCAGGTATTGCAATGATTGTCCAAAAATGATGTTGTGTTTCTTGCTCGCCGTTTTGATTTTTATGAGTTAAAGCAACTTTGATAAGCGAGAGCTCAGCTAAATTTGTGTACCTGTCGAGTGGTTTGCTTTGTAAAATAACCAATTTTCAAGGAAAACGTAAATGACTATTATACTGATTAGCACCTAGAAAGCTCGAAGTTGATCGAACAATTTAAGATTTGGCCAGATTACTGAGTAATCTGTTTAACTTTCGCACTCCAAATTTGAGTTCAGTACAGCGCTTTATTCAAATCTTATGGTTGCACAAACTTTAGTCCGGGTAACTATGCTCTATACTGTAAAACCGTACACGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>316 254 185 166 73 6</canonical_bands>
                <polymorphic_bands>570 185 166 73 6</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>420 316 183 81</canonical_bands>
                <polymorphic_bands>736 183 81</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGATTCATAAATTCGCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTATTTTACAAAGCAAACCACTC</pcr_primer_p2>
		<pcr_amplicon_size>337</pcr_amplicon_size>
		<canonical_amplicon>AAGATTCATAAATTCGCTGAAAATGATAATTTGAAGGACAAGTTTTCTGAAGTACAAGCTGGCGCACAGTAACCCGGACTGATAAAAACGAGTATAACTTTAGACATACATAAGTATCTTGGGATCAAAAAAATTGGGAGAAATATAGTTTTACTTCTGATTCGAAGCTACTGAAATTTTCGAACCGATTCTTCAAGTCCAGGTATTGCAATGATTGTCCAAAAATGATGTTGTGTTTCTTGCTCGCCGTTTTGATTTTTATGAGTTAAAGCAACTTTGATAAGCGAGAGCTCAGCTAAATTTGTGTACCTGTCGAGTGGTTTGCTTTGTAAAATAA</canonical_amplicon>
		<polymorphic_amplicon>AAGATTCATAAATTCGCTGAAAATGATAATTTGAAGGACAAGTTTTCTGAAYTACAAGCTGGCGCACAGTAACCCGGACTGATAAAAACGAGTATAACTTTAGACATACATAAGTATCTTGGGATCAAAAAAATTGGGAGAAATATAGTTTTACTTCTGATTCGAAGCTACTGAAATTTTCGAACCGATTCTTCAAGTCCAGGTATTGCAATGATTGTCCAAAAATGATGTTGTGTTTCTTGCTCGCCGTTTTGATTTTTATGAGTTAAAGCAACTTTGATAAGCGAGAGCTCAGCTAAATTTGTGTACCTGTCGAGTGGTTTGCTTTGTAAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23503</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1391080</contig_pos>
        <strand>+</strand>
        <context>AGACGCTAGA[C/G]AATGATCTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTCCCAGACGGAAGAATGAAACGAGTCAACGAGTTGCACAGACGCTAGA</left_flank>
        <right_flank>AATGATCTCGAATAATGCATTTTTCATAAAAATAATTTTAATCGCCCGAT</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGTAAGAGAGCATATGACTACAATGTTATGATGGTCCAGGAGAGTGGTACTGAAGTAGAGATGCGTGGAAGATGTAGTGCTGGACAGAAGATGCTCGCTTCTCTTCTTATTCGCATTGCCCTTGCCGAAGTTTTTGGTGGATTGTGTTCCATGATTGCGTTGGATGAGCCAACCACAAACTTGGATGAGTGGAAGGTTGATGGAATGGCAAACGTTCTTAGTGATCTGATTGAAGCACGACGGGGTTATGACGACGATGGAAATTTGAGAGGGCGTGATATGCAGGTATGAGCTTTGGAAGTTTCTTTTCAGTTGAAAGGCACTCTTTTAGATGGTCATCATCACACACGACGAGCGTCTCGTCAACAAAATCACTCTCAGCTGCCGTCCAGATTATATCTACTGTTTGGGGAAGGATGAGCATGGAGTCAGTTTCTTGTCGAAACGATTCCCAGACGGAAGAATGAAACGAGTCAACGAGTTGCACAGACGCTAGACAATGATCTCGAATAATGCATTTTTCATAAAAATAATTTTAATCGCCCGATGTTTTATTATGTGCCTTTAATTTGATATCCCGAGTTTCCCAAATTGATGAAATACCTCCCTGTTTTATGTTTATTTTTACGAAATGAACCCGTTGTATAGAAATGTGTTTCGCAAATGTTTTGCAAACTAAAACGTACCCCGACGCGTTTCCTGCGCACTATTGATTTTTACATGCTTGAGGCTATATATTTAGCTCAGTTTCAATTCGAAAACGTTTTCAGTATGTCAGATGAAGAAGATGACTACATGTCTGCAGATTTTCTTCAAGGTGTCAGTGATCAACCAGTTGGAATCGCCAAATCGAGAGCTCACAAGCGCCAACTACAAATCCATTCAAGATTCGAAGAATCGAGAGAGACTTTTAAGCCGAAAAGACCGATAAGTCATGCTGAAAGAGGTTGGTTTTATTCCAAATTTATGTACTTTTTTCAATCTAATAATCAAGTTTT</canonical>
            <polymorphic>GAAGTAAGAGAGCATATGACTACAATGTTATGATGGTCCAGGAGAGTGGTACTGAAGTAGAGATGCGTGGAAGATGTAGTGCTGGACAGAAGATGCTCGCTTCTCTTCTTATTCGCATTGCCCTTGCCGAAGTTTTTGGTGGATTGTGTTCCATGATTGCGTTGGATGAGCCAACCACAAACTTGGATGAGTGGAAGGTTGATGGAATGGCAAACGTTCTTAGTGATCTGATTGAAGCACGACGGGGTTATGACGACGATGGAAATTTGAGAGGGCGTGATATGCAGGTATGAGCTTTGGAAGTTTCTTTTCAGTTGAAAGGCACTCTTTTAGATGGTCATCATCACACACGACGAGCGTCTCGTCAACAAAATCACTCTCAGCTGCCGTCCAGATTATATCTACTGTTTGGGGAAGGATGAGCATGGAGTCAGTTTCTTGTCGAAACGATTCCCAGACGGAAGAATGAAACGAGTCAACGAGTTGCACAGACGCTAGASAATGATCTCGAATAATGCATTTTTCATAAAAATAATTTTAATCGCCCGATGTTTTATTATGTGCCTTTAATTTGATATCCCGAGTTTCCCAAATTGATGAAATACCTCCCTGTTTTATGTTTATTTTTACGAAATGAACCCGTTGTATAGAAATGTGTTTCGCAAATGTTTTGCAAACTAAAACGTACCCCGACGCGTTTCCTGCGCACTATTGATTTTTACATGCTTGAGGCTATATATTTAGCTCAGTTTCAATTCGAAAACGTTTTCAGTATGTCAGATGAAGAAGATGACTACATGTCTGCAGATTTTCTTCAAGGTGTCAGTGATCAACCAGTTGGAATCGCCAAATCGAGAGCTCACAAGCGCCAACTACAAATCCATTCAAGATTCGAAGAATCGAGAGAGACTTTTAAGCCGAAAAGACCGATAAGTCATGCTGAAAGAGGTTGGTTTTATTCCAAATTTATGTACTTTTTTCAATCTAATAATCAAGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGATGGTCATCATCACACAC</pcr_primer_p1>
		<pcr_primer_p2>GGATATCAAATTAAAGGCACATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTAGATGGTCATCATCACACACGACGAGCGTCTCGTCAACAAAATCACTCTCAGCTGCCGTCCAGATTATATCTACTGTTTGGGGAAGGATGAGCATGGAGTCAGTTTCTTGTCGAAACGATTCCCAGACGGAAGAATGAAACGAGTCAACGAGTTGCACAGACGCTAGACAATGATCTCGAATAATGCATTTTTCATAAAAATAATTTTAATCGCCCGATGTTTTATTATGTGCCTTTAATTTGATATCC</canonical_amplicon>
		<polymorphic_amplicon>TTAGATGGTCATCATCACACACGACGAGCGTCTCGTCAACAAAATCACTCTCAGCTGCCGTCCAGATTATATCTACTGTTTGGGGAAGGATGAGCATGGAGTCAGTTTCTTGTCGAAACGATTCCCAGACGGAAGAATGAAACGAGTCAACGAGTTGCACAGACGCTAGASAATGATCTCGAATAATGCATTTTTCATAAAAATAATTTTAATCGCCCGATGTTTTATTATGTGCCTTTAATTTGATATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23504</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1391193</contig_pos>
        <strand>+</strand>
        <context>TACCTCCCTG[C/T]TTTATGTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCTTTAATTTGATATCCCGAGTTTCCCAAATTGATGAAATACCTCCCTG</left_flank>
        <right_flank>TTTATGTTTATTTTTACGAAATGAACCCGTTGTATAGAAATGTGTTTCGC</right_flank>
        <qual_score>149</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCATTGCCCTTGCCGAAGTTTTTGGTGGATTGTGTTCCATGATTGCGTTGGATGAGCCAACCACAAACTTGGATGAGTGGAAGGTTGATGGAATGGCAAACGTTCTTAGTGATCTGATTGAAGCACGACGGGGTTATGACGACGATGGAAATTTGAGAGGGCGTGATATGCAGGTATGAGCTTTGGAAGTTTCTTTTCAGTTGAAAGGCACTCTTTTAGATGGTCATCATCACACACGACGAGCGTCTCGTCAACAAAATCACTCTCAGCTGCCGTCCAGATTATATCTACTGTTTGGGGAAGGATGAGCATGGAGTCAGTTTCTTGTCGAAACGATTCCCAGACGGAAGAATGAAACGAGTCAACGAGTTGCACAGACGCTAGACAATGATCTCGAATAATGCATTTTTCATAAAAATAATTTTAATCGCCCGATGTTTTATTATGTGCCTTTAATTTGATATCCCGAGTTTCCCAAATTGATGAAATACCTCCCTGTTTTATGTTTATTTTTACGAAATGAACCCGTTGTATAGAAATGTGTTTCGCAAATGTTTTGCAAACTAAAACGTACCCCGACGCGTTTCCTGCGCACTATTGATTTTTACATGCTTGAGGCTATATATTTAGCTCAGTTTCAATTCGAAAACGTTTTCAGTATGTCAGATGAAGAAGATGACTACATGTCTGCAGATTTTCTTCAAGGTGTCAGTGATCAACCAGTTGGAATCGCCAAATCGAGAGCTCACAAGCGCCAACTACAAATCCATTCAAGATTCGAAGAATCGAGAGAGACTTTTAAGCCGAAAAGACCGATAAGTCATGCTGAAAGAGGTTGGTTTTATTCCAAATTTATGTACTTTTTTCAATCTAATAATCAAGTTTTCAGAAAAAGAGCGAAGAGAAGAAGCACTGGCAAAACCCATCAGCCAAGAGTCTAAGGGGTTTGCCTTGATGGCGAAAATGGGTTTCAAACCAGGAATGACACTGGGAAAGCAA</canonical>
            <polymorphic>CGCATTGCCCTTGCCGAAGTTTTTGGTGGATTGTGTTCCATGATTGCGTTGGATGAGCCAACCACAAACTTGGATGAGTGGAAGGTTGATGGAATGGCAAACGTTCTTAGTGATCTGATTGAAGCACGACGGGGTTATGACGACGATGGAAATTTGAGAGGGCGTGATATGCAGGTATGAGCTTTGGAAGTTTCTTTTCAGTTGAAAGGCACTCTTTTAGATGGTCATCATCACACACGACGAGCGTCTCGTCAACAAAATCACTCTCAGCTGCCGTCCAGATTATATCTACTGTTTGGGGAAGGATGAGCATGGAGTCAGTTTCTTGTCGAAACGATTCCCAGACGGAAGAATGAAACGAGTCAACGAGTTGCACAGACGCTAGACAATGATCTCGAATAATGCATTTTTCATAAAAATAATTTTAATCGCCCGATGTTTTATTATGTGCCTTTAATTTGATATCCCGAGTTTCCCAAATTGATGAAATACCTCCCTGYTTTATGTTTATTTTTACGAAATGAACCCGTTGTATAGAAATGTGTTTCGCAAATGTTTTGCAAACTAAAACGTACCCCGACGCGTTTCCTGCGCACTATTGATTTTTACATGCTTGAGGCTATATATTTAGCTCAGTTTCAATTCGAAAACGTTTTCAGTATGTCAGATGAAGAAGATGACTACATGTCTGCAGATTTTCTTCAAGGTGTCAGTGATCAACCAGTTGGAATCGCCAAATCGAGAGCTCACAAGCGCCAACTACAAATCCATTCAAGATTCGAAGAATCGAGAGAGACTTTTAAGCCGAAAAGACCGATAAGTCATGCTGAAAGAGGTTGGTTTTATTCCAAATTTATGTACTTTTTTCAATCTAATAATCAAGTTTTCAGAAAAAGAGCGAAGAGAAGAAGCACTGGCAAAACCCATCAGCCAAGAGTCTAAGGGGTTTGCCTTGATGGCGAAAATGGGTTTCAAACCAGGAATGACACTGGGAAAGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTATTATGTGCCTTTAATTTGA</pcr_primer_p1>
		<pcr_primer_p2>ACATGTAGTCATCTTCTTCATCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTATTATGTGCCTTTAATTTGATATCCCGAGTTTCCCAAATTGATGAAATACCTCCCTGTTTTATGTTTATTTTTACGAAATGAACCCGTTGTATAGAAATGTGTTTCGCAAATGTTTTGCAAACTAAAACGTACCCCGACGCGTTTCCTGCGCACTATTGATTTTTACATGCTTGAGGCTATATATTTAGCTCAGTTTCAATTCGAAAACGTTTTCAGTATGTCAGATGAAGAAGATGACTACATGT</canonical_amplicon>
		<polymorphic_amplicon>TTTTATTATGTGCCTTTAATTTGATATCCCGAGTTTCCCAAATTGATGAAATACCTCCCTGYTTTATGTTTATTTTTACGAAATGAACCCGTTGTATAGAAATGTGTTTCGCAAATGTTTTGCAAACTAAAACGTACCCCGACGCGTTTCCTGCGCACTATTGATTTTTACATGCTTGAGGCTATATATTTAGCTCAGTTTCAATTCGAAAACGTTTTCAGTATGTCAGATGAAGAAGATGACTACATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23505</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1417330</contig_pos>
        <strand></strand>
        <context>TATTAGGGGG[A/C]aaaaaatcga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGGCAGAAAAAATCTAAAGGGTGTAATAGGAGGAGCGTTTATTAGGGGG</left_flank>
        <right_flank>AAAAAATCGAAAGGGTGGAAGAGAAACATCGGCGGCCGTGGAAGATCCTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCTAGTGTCATTTGTCTCTCAACACGTCGTCGTCAGTCGCAGAAGAAGACGACGACGACGAATTGAGAAGGAGGACTTCTGGGATTTCGTGTTGTCACAGAACGCTTGTTCTATCCCCGCGGGATGGTTTGGGGTAGAAGTGTGAAGAAACTTTTTTTAAGAAAGAGAAGATTATTTTGCTATGCTATGAAGAACCATAATCAGAGTCCTAACCCAATTAAATAACTCAATTAAATTTTGTTTTTGATGATCTCCATGTGGAATATATATATTCTGATTTTAATTCTGTGCGAAACATAAATCTCAATAACGGTGAAGACTGTAAAAAAAGAAGGAAAATCAAATGTGCCAGTGAGAACTACAGTATGCCTGCTGGCGAATGAACAACGTTAAATTAAATTAGCTCAAAAAAATGAATCGGACTACCAAGAGAAGAGACTGTATCATACTGGCAGAAAAAATCTAAAGGGTGTAATAGGAGGAGCGTTTATTAGGGGGAAAAAAATCGAAAGGGTGGAAGAGAAACATCGGCGGCCGTGGAAGATCCTAAAACGAGAAATACAATATCCTGAAAATATTATGACTTTCCGGATTTATTTTATCGTTTTTTACAGATTTTCGTCTCTATTTTTCTGTTATTTCATCCCAAACAAGTCGGATAGCTAACACTTTGACAATAAACAAATTGACTGAAATCCTGATAATAAAAATATTTTAGGTTACGGTAGTTTTCGTTTTAAGAACTTCGGTCACCGCCGTCGGAGTTTCTCTTCCACTCTTCTAATTTCTGTACCAGTTTAAAAGCTCCTCCTATTTTAATATACCAGTTATCAAAACACATCCTCAGCATCAGATTAATACTTTTCAATCTGGAGGAACAAGCCAAGAAATAAAAGTTTTCGTTTACAGTTTCAGGAAAACCGTTCATCTTCAATGTTTTTTTTCTCTTTTGCACCATTTGATATTCTACTCCTTTCACATTTCCAACCATCCGAAATG</canonical>
            <polymorphic>GCCTAGTGTCATTTGTCTCTCAACACGTCGTCGTCAGTCGCAGAAGAAGACGACGACGACGAATTGAGAAGGAGGACTTCTGGGATTTCGTGTTGTCACAGAACGCTTGTTCTATCCCCGCGGGATGGTTTGGGGTAGAAGTGTGAAGAAACTTTTTTTAAGAAAGAGAAGATTATTTTGCTATGCTATGAAGAACCATAATCAGAGTCCTAACCCAATTAAATAACTCAATTAAATTTTGTTTTTGATGATCTCCATGTGGAATATATATATTCTGATTTTAATTCTGTGCGAAACATAAATCTCAATAACGGTGAAGACTGTAAAAAAAGAAGGAAAATCAAATGTGCCAGTGAGAACTACAGTATGCCTGCTGGCGAATGAACAACGTTAAATTAAATTAGCTCAAAAAAATGAATCGGACTACCAAGAGAAGAGACTGTATCATACTGGCAGAAAAAATCTAAAGGGTGTAATAGGAGGAGCGTTTATTAGGGGGMAAAAAATCGAAAGGGTGGAAGAGAAACATCGGCGGCCGTGGAAGATCCTAAAACGAGAAATACAATATCCTGAAAATATTATGACTTTCCGGATTTATTTTATCGTTTTTTACAGATTTTCGTCTCTATTTTTCTGTTATTTCATCCCAAACAAGTCGGATAGCTAACACTTTGACAATAAACAAATTGACTGAAATCCTGATAATAAAAATATTTTAGGTTACGGTAGTTTTCGTTTTAAGAACTTCGGTCACCGCCGTCGGAGTTTCTCTTCCACTCTTCTAATTTCTGTACCAGTTTAAAAGCTCCTCCTATTTTAATATACCAGTTATCAAAACACATCCTCAGCATCAGATTAATACTTTTCAATCTGGAGGAACAAGCCAAGAAATAAAAGTTTTCGTTTACAGTTTCAGGAAAACCGTTCATCTTCAATGTTTTTTTTCTCTTTTGCACCATTTGATATTCTACTCCTTTCACATTTCCAACCATCCGAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTGTATCATACTGGCAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGGATGTGTTTTGATAACTGGTA</pcr_primer_p2>
		<pcr_amplicon_size>407</pcr_amplicon_size>
		<canonical_amplicon>ACTGTATCATACTGGCAGAAAAAATCTAAAGGGTGTAATAGGAGGAGCGTTTATTAGGGGGAAAAAAATCGAAAGGGTGGAAGAGAAACATCGGCGGCCGTGGAAGATCCTAAAACGAGAAATACAATATCCTGAAAATATTATGACTTTCCGGATTTATTTTATCGTTTTTTACAGATTTTCGTCTCTATTTTTCTGTTATTTCATCCCAAACAAGTCGGATAGCTAACACTTTGACAATAAACAAATTGACTGAAATCCTGATAATAAAAATATTTTAGGTTACGGTAGTTTTCGTTTTAAGAACTTCGGTCACCGCCGTCGGAGTTTCTCTTCCACTCTTCTAATTTCTGTACCAGTTTAAAAGCTCCTCCTATTTTAATATACCAGTTATCAAAACACATCCT</canonical_amplicon>
		<polymorphic_amplicon>ACTGTATCATACTGGCAGAAAAAATCTAAAGGGTGTAATAGGAGGAGCGTTTATTAGGGGGMAAAAAATCGAAAGGGTGGAAGAGAAACATCGGCGGCCGTGGAAGATCCTAAAACGAGAAATACAATATCCTGAAAATATTATGACTTTCCGGATTTATTTTATCGTTTTTTACAGATTTTCGTCTCTATTTTTCTGTTATTTCATCCCAAACAAGTCGGATAGCTAACACTTTGACAATAAACAAATTGACTGAAATCCTGATAATAAAAATATTTTAGGTTACGGTAGTTTTCGTTTTAAGAACTTCGGTCACCGCCGTCGGAGTTTCTCTTCCACTCTTCTAATTTCTGTACCAGTTTAAAAGCTCCTCCTATTTTAATATACCAGTTATCAAAACACATCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23506</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1417379</contig_pos>
        <strand></strand>
        <context>tggaagatcc[T/C]aaaacgagaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAAAAAAATCGAAAGGGTGGAAGAGAAACATCGGCGGCCGTGGAAGATCC</left_flank>
        <right_flank>AAAACGAGAAATACAATATCCTGAAAATATTATGACTTTCCGGATTTATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGACGACGACGAATTGAGAAGGAGGACTTCTGGGATTTCGTGTTGTCACAGAACGCTTGTTCTATCCCCGCGGGATGGTTTGGGGTAGAAGTGTGAAGAAACTTTTTTTAAGAAAGAGAAGATTATTTTGCTATGCTATGAAGAACCATAATCAGAGTCCTAACCCAATTAAATAACTCAATTAAATTTTGTTTTTGATGATCTCCATGTGGAATATATATATTCTGATTTTAATTCTGTGCGAAACATAAATCTCAATAACGGTGAAGACTGTAAAAAAAGAAGGAAAATCAAATGTGCCAGTGAGAACTACAGTATGCCTGCTGGCGAATGAACAACGTTAAATTAAATTAGCTCAAAAAAATGAATCGGACTACCAAGAGAAGAGACTGTATCATACTGGCAGAAAAAATCTAAAGGGTGTAATAGGAGGAGCGTTTATTAGGGGGAAAAAAATCGAAAGGGTGGAAGAGAAACATCGGCGGCCGTGGAAGATCCTAAAACGAGAAATACAATATCCTGAAAATATTATGACTTTCCGGATTTATTTTATCGTTTTTTACAGATTTTCGTCTCTATTTTTCTGTTATTTCATCCCAAACAAGTCGGATAGCTAACACTTTGACAATAAACAAATTGACTGAAATCCTGATAATAAAAATATTTTAGGTTACGGTAGTTTTCGTTTTAAGAACTTCGGTCACCGCCGTCGGAGTTTCTCTTCCACTCTTCTAATTTCTGTACCAGTTTAAAAGCTCCTCCTATTTTAATATACCAGTTATCAAAACACATCCTCAGCATCAGATTAATACTTTTCAATCTGGAGGAACAAGCCAAGAAATAAAAGTTTTCGTTTACAGTTTCAGGAAAACCGTTCATCTTCAATGTTTTTTTTCTCTTTTGCACCATTTGATATTCTACTCCTTTCACATTTCCAACCATCCGAAATGACAGATCTGAAATGGAAAAAATCTTTTTCGCCCACAATCTCAATCTCCA</canonical>
            <polymorphic>ACGACGACGACGAATTGAGAAGGAGGACTTCTGGGATTTCGTGTTGTCACAGAACGCTTGTTCTATCCCCGCGGGATGGTTTGGGGTAGAAGTGTGAAGAAACTTTTTTTAAGAAAGAGAAGATTATTTTGCTATGCTATGAAGAACCATAATCAGAGTCCTAACCCAATTAAATAACTCAATTAAATTTTGTTTTTGATGATCTCCATGTGGAATATATATATTCTGATTTTAATTCTGTGCGAAACATAAATCTCAATAACGGTGAAGACTGTAAAAAAAGAAGGAAAATCAAATGTGCCAGTGAGAACTACAGTATGCCTGCTGGCGAATGAACAACGTTAAATTAAATTAGCTCAAAAAAATGAATCGGACTACCAAGAGAAGAGACTGTATCATACTGGCAGAAAAAATCTAAAGGGTGTAATAGGAGGAGCGTTTATTAGGGGGAAAAAAATCGAAAGGGTGGAAGAGAAACATCGGCGGCCGTGGAAGATCCYAAAACGAGAAATACAATATCCTGAAAATATTATGACTTTCCGGATTTATTTTATCGTTTTTTACAGATTTTCGTCTCTATTTTTCTGTTATTTCATCCCAAACAAGTCGGATAGCTAACACTTTGACAATAAACAAATTGACTGAAATCCTGATAATAAAAATATTTTAGGTTACGGTAGTTTTCGTTTTAAGAACTTCGGTCACCGCCGTCGGAGTTTCTCTTCCACTCTTCTAATTTCTGTACCAGTTTAAAAGCTCCTCCTATTTTAATATACCAGTTATCAAAACACATCCTCAGCATCAGATTAATACTTTTCAATCTGGAGGAACAAGCCAAGAAATAAAAGTTTTCGTTTACAGTTTCAGGAAAACCGTTCATCTTCAATGTTTTTTTTCTCTTTTGCACCATTTGATATTCTACTCCTTTCACATTTCCAACCATCCGAAATGACAGATCTGAAATGGAAAAAATCTTTTTCGCCCACAATCTCAATCTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATAGGAGGAGCGTTTATTAGG</pcr_primer_p1>
		<pcr_primer_p2>AGGATGTGTTTTGATAACTGGTA</pcr_primer_p2>
		<pcr_amplicon_size>372</pcr_amplicon_size>
		<canonical_amplicon>TAATAGGAGGAGCGTTTATTAGGGGGAAAAAAATCGAAAGGGTGGAAGAGAAACATCGGCGGCCGTGGAAGATCCTAAAACGAGAAATACAATATCCTGAAAATATTATGACTTTCCGGATTTATTTTATCGTTTTTTACAGATTTTCGTCTCTATTTTTCTGTTATTTCATCCCAAACAAGTCGGATAGCTAACACTTTGACAATAAACAAATTGACTGAAATCCTGATAATAAAAATATTTTAGGTTACGGTAGTTTTCGTTTTAAGAACTTCGGTCACCGCCGTCGGAGTTTCTCTTCCACTCTTCTAATTTCTGTACCAGTTTAAAAGCTCCTCCTATTTTAATATACCAGTTATCAAAACACATCCT</canonical_amplicon>
		<polymorphic_amplicon>TAATAGGAGGAGCGTTTATTAGGGGGAAAAAAATCGAAAGGGTGGAAGAGAAACATCGGCGGCCGTGGAAGATCCYAAAACGAGAAATACAATATCCTGAAAATATTATGACTTTCCGGATTTATTTTATCGTTTTTTACAGATTTTCGTCTCTATTTTTCTGTTATTTCATCCCAAACAAGTCGGATAGCTAACACTTTGACAATAAACAAATTGACTGAAATCCTGATAATAAAAATATTTTAGGTTACGGTAGTTTTCGTTTTAAGAACTTCGGTCACCGCCGTCGGAGTTTCTCTTCCACTCTTCTAATTTCTGTACCAGTTTAAAAGCTCCTCCTATTTTAATATACCAGTTATCAAAACACATCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23507</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1417390</contig_pos>
        <strand></strand>
        <context>aaaacgagaa[A/C]tacartatcc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAGGGTGGAAGAGAAACATCGGCGGCCGTGGAAGATCCTAAAACGAGAA</left_flank>
        <right_flank>TACAATATCCTGAAAATATTATGACTTTCCGGATTTATTTTATCGTTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTGAGAAGGAGGACTTCTGGGATTTCGTGTTGTCACAGAACGCTTGTTCTATCCCCGCGGGATGGTTTGGGGTAGAAGTGTGAAGAAACTTTTTTTAAGAAAGAGAAGATTATTTTGCTATGCTATGAAGAACCATAATCAGAGTCCTAACCCAATTAAATAACTCAATTAAATTTTGTTTTTGATGATCTCCATGTGGAATATATATATTCTGATTTTAATTCTGTGCGAAACATAAATCTCAATAACGGTGAAGACTGTAAAAAAAGAAGGAAAATCAAATGTGCCAGTGAGAACTACAGTATGCCTGCTGGCGAATGAACAACGTTAAATTAAATTAGCTCAAAAAAATGAATCGGACTACCAAGAGAAGAGACTGTATCATACTGGCAGAAAAAATCTAAAGGGTGTAATAGGAGGAGCGTTTATTAGGGGGAAAAAAATCGAAAGGGTGGAAGAGAAACATCGGCGGCCGTGGAAGATCCTAAAACGAGAAATACAATATCCTGAAAATATTATGACTTTCCGGATTTATTTTATCGTTTTTTACAGATTTTCGTCTCTATTTTTCTGTTATTTCATCCCAAACAAGTCGGATAGCTAACACTTTGACAATAAACAAATTGACTGAAATCCTGATAATAAAAATATTTTAGGTTACGGTAGTTTTCGTTTTAAGAACTTCGGTCACCGCCGTCGGAGTTTCTCTTCCACTCTTCTAATTTCTGTACCAGTTTAAAAGCTCCTCCTATTTTAATATACCAGTTATCAAAACACATCCTCAGCATCAGATTAATACTTTTCAATCTGGAGGAACAAGCCAAGAAATAAAAGTTTTCGTTTACAGTTTCAGGAAAACCGTTCATCTTCAATGTTTTTTTTCTCTTTTGCACCATTTGATATTCTACTCCTTTCACATTTCCAACCATCCGAAATGACAGATCTGAAATGGAAAAAATCTTTTTCGCCCACAATCTCAATCTCCAAAAATGCGGGG</canonical>
            <polymorphic>GAATTGAGAAGGAGGACTTCTGGGATTTCGTGTTGTCACAGAACGCTTGTTCTATCCCCGCGGGATGGTTTGGGGTAGAAGTGTGAAGAAACTTTTTTTAAGAAAGAGAAGATTATTTTGCTATGCTATGAAGAACCATAATCAGAGTCCTAACCCAATTAAATAACTCAATTAAATTTTGTTTTTGATGATCTCCATGTGGAATATATATATTCTGATTTTAATTCTGTGCGAAACATAAATCTCAATAACGGTGAAGACTGTAAAAAAAGAAGGAAAATCAAATGTGCCAGTGAGAACTACAGTATGCCTGCTGGCGAATGAACAACGTTAAATTAAATTAGCTCAAAAAAATGAATCGGACTACCAAGAGAAGAGACTGTATCATACTGGCAGAAAAAATCTAAAGGGTGTAATAGGAGGAGCGTTTATTAGGGGGAAAAAAATCGAAAGGGTGGAAGAGAAACATCGGCGGCCGTGGAAGATCCTAAAACGAGAAMTACAATATCCTGAAAATATTATGACTTTCCGGATTTATTTTATCGTTTTTTACAGATTTTCGTCTCTATTTTTCTGTTATTTCATCCCAAACAAGTCGGATAGCTAACACTTTGACAATAAACAAATTGACTGAAATCCTGATAATAAAAATATTTTAGGTTACGGTAGTTTTCGTTTTAAGAACTTCGGTCACCGCCGTCGGAGTTTCTCTTCCACTCTTCTAATTTCTGTACCAGTTTAAAAGCTCCTCCTATTTTAATATACCAGTTATCAAAACACATCCTCAGCATCAGATTAATACTTTTCAATCTGGAGGAACAAGCCAAGAAATAAAAGTTTTCGTTTACAGTTTCAGGAAAACCGTTCATCTTCAATGTTTTTTTTCTCTTTTGCACCATTTGATATTCTACTCCTTTCACATTTCCAACCATCCGAAATGACAGATCTGAAATGGAAAAAATCTTTTTCGCCCACAATCTCAATCTCCAAAAATGCGGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATAGGAGGAGCGTTTATTAGG</pcr_primer_p1>
		<pcr_primer_p2>AGGATGTGTTTTGATAACTGGTA</pcr_primer_p2>
		<pcr_amplicon_size>372</pcr_amplicon_size>
		<canonical_amplicon>TAATAGGAGGAGCGTTTATTAGGGGGAAAAAAATCGAAAGGGTGGAAGAGAAACATCGGCGGCCGTGGAAGATCCTAAAACGAGAAATACAATATCCTGAAAATATTATGACTTTCCGGATTTATTTTATCGTTTTTTACAGATTTTCGTCTCTATTTTTCTGTTATTTCATCCCAAACAAGTCGGATAGCTAACACTTTGACAATAAACAAATTGACTGAAATCCTGATAATAAAAATATTTTAGGTTACGGTAGTTTTCGTTTTAAGAACTTCGGTCACCGCCGTCGGAGTTTCTCTTCCACTCTTCTAATTTCTGTACCAGTTTAAAAGCTCCTCCTATTTTAATATACCAGTTATCAAAACACATCCT</canonical_amplicon>
		<polymorphic_amplicon>TAATAGGAGGAGCGTTTATTAGGGGGAAAAAAATCGAAAGGGTGGAAGAGAAACATCGGCGGCCGTGGAAGATCCTAAAACGAGAAMTACAATATCCTGAAAATATTATGACTTTCCGGATTTATTTTATCGTTTTTTACAGATTTTCGTCTCTATTTTTCTGTTATTTCATCCCAAACAAGTCGGATAGCTAACACTTTGACAATAAACAAATTGACTGAAATCCTGATAATAAAAATATTTTAGGTTACGGTAGTTTTCGTTTTAAGAACTTCGGTCACCGCCGTCGGAGTTTCTCTTCCACTCTTCTAATTTCTGTACCAGTTTAAAAGCTCCTCCTATTTTAATATACCAGTTATCAAAACACATCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23508</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1417395</contig_pos>
        <strand></strand>
        <context>gagaamtaca[A/G]tatcctgaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGGAAGAGAAACATCGGCGGCCGTGGAAGATCCTAAAACGAGAAATACA</left_flank>
        <right_flank>TATCCTGAAAATATTATGACTTTCCGGATTTATTTTATCGTTTTTTACAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAAGGAGGACTTCTGGGATTTCGTGTTGTCACAGAACGCTTGTTCTATCCCCGCGGGATGGTTTGGGGTAGAAGTGTGAAGAAACTTTTTTTAAGAAAGAGAAGATTATTTTGCTATGCTATGAAGAACCATAATCAGAGTCCTAACCCAATTAAATAACTCAATTAAATTTTGTTTTTGATGATCTCCATGTGGAATATATATATTCTGATTTTAATTCTGTGCGAAACATAAATCTCAATAACGGTGAAGACTGTAAAAAAAGAAGGAAAATCAAATGTGCCAGTGAGAACTACAGTATGCCTGCTGGCGAATGAACAACGTTAAATTAAATTAGCTCAAAAAAATGAATCGGACTACCAAGAGAAGAGACTGTATCATACTGGCAGAAAAAATCTAAAGGGTGTAATAGGAGGAGCGTTTATTAGGGGGAAAAAAATCGAAAGGGTGGAAGAGAAACATCGGCGGCCGTGGAAGATCCTAAAACGAGAAATACAATATCCTGAAAATATTATGACTTTCCGGATTTATTTTATCGTTTTTTACAGATTTTCGTCTCTATTTTTCTGTTATTTCATCCCAAACAAGTCGGATAGCTAACACTTTGACAATAAACAAATTGACTGAAATCCTGATAATAAAAATATTTTAGGTTACGGTAGTTTTCGTTTTAAGAACTTCGGTCACCGCCGTCGGAGTTTCTCTTCCACTCTTCTAATTTCTGTACCAGTTTAAAAGCTCCTCCTATTTTAATATACCAGTTATCAAAACACATCCTCAGCATCAGATTAATACTTTTCAATCTGGAGGAACAAGCCAAGAAATAAAAGTTTTCGTTTACAGTTTCAGGAAAACCGTTCATCTTCAATGTTTTTTTTCTCTTTTGCACCATTTGATATTCTACTCCTTTCACATTTCCAACCATCCGAAATGACAGATCTGAAATGGAAAAAATCTTTTTCGCCCACAATCTCAATCTCCAAAAATGCGGGGAACTC</canonical>
            <polymorphic>GAGAAGGAGGACTTCTGGGATTTCGTGTTGTCACAGAACGCTTGTTCTATCCCCGCGGGATGGTTTGGGGTAGAAGTGTGAAGAAACTTTTTTTAAGAAAGAGAAGATTATTTTGCTATGCTATGAAGAACCATAATCAGAGTCCTAACCCAATTAAATAACTCAATTAAATTTTGTTTTTGATGATCTCCATGTGGAATATATATATTCTGATTTTAATTCTGTGCGAAACATAAATCTCAATAACGGTGAAGACTGTAAAAAAAGAAGGAAAATCAAATGTGCCAGTGAGAACTACAGTATGCCTGCTGGCGAATGAACAACGTTAAATTAAATTAGCTCAAAAAAATGAATCGGACTACCAAGAGAAGAGACTGTATCATACTGGCAGAAAAAATCTAAAGGGTGTAATAGGAGGAGCGTTTATTAGGGGGAAAAAAATCGAAAGGGTGGAAGAGAAACATCGGCGGCCGTGGAAGATCCTAAAACGAGAAATACARTATCCTGAAAATATTATGACTTTCCGGATTTATTTTATCGTTTTTTACAGATTTTCGTCTCTATTTTTCTGTTATTTCATCCCAAACAAGTCGGATAGCTAACACTTTGACAATAAACAAATTGACTGAAATCCTGATAATAAAAATATTTTAGGTTACGGTAGTTTTCGTTTTAAGAACTTCGGTCACCGCCGTCGGAGTTTCTCTTCCACTCTTCTAATTTCTGTACCAGTTTAAAAGCTCCTCCTATTTTAATATACCAGTTATCAAAACACATCCTCAGCATCAGATTAATACTTTTCAATCTGGAGGAACAAGCCAAGAAATAAAAGTTTTCGTTTACAGTTTCAGGAAAACCGTTCATCTTCAATGTTTTTTTTCTCTTTTGCACCATTTGATATTCTACTCCTTTCACATTTCCAACCATCCGAAATGACAGATCTGAAATGGAAAAAATCTTTTTCGCCCACAATCTCAATCTCCAAAAATGCGGGGAACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATAGGAGGAGCGTTTATTAGG</pcr_primer_p1>
		<pcr_primer_p2>AGGATGTGTTTTGATAACTGGTA</pcr_primer_p2>
		<pcr_amplicon_size>372</pcr_amplicon_size>
		<canonical_amplicon>TAATAGGAGGAGCGTTTATTAGGGGGAAAAAAATCGAAAGGGTGGAAGAGAAACATCGGCGGCCGTGGAAGATCCTAAAACGAGAAATACAATATCCTGAAAATATTATGACTTTCCGGATTTATTTTATCGTTTTTTACAGATTTTCGTCTCTATTTTTCTGTTATTTCATCCCAAACAAGTCGGATAGCTAACACTTTGACAATAAACAAATTGACTGAAATCCTGATAATAAAAATATTTTAGGTTACGGTAGTTTTCGTTTTAAGAACTTCGGTCACCGCCGTCGGAGTTTCTCTTCCACTCTTCTAATTTCTGTACCAGTTTAAAAGCTCCTCCTATTTTAATATACCAGTTATCAAAACACATCCT</canonical_amplicon>
		<polymorphic_amplicon>TAATAGGAGGAGCGTTTATTAGGGGGAAAAAAATCGAAAGGGTGGAAGAGAAACATCGGCGGCCGTGGAAGATCCTAAAACGAGAAATACARTATCCTGAAAATATTATGACTTTCCGGATTTATTTTATCGTTTTTTACAGATTTTCGTCTCTATTTTTCTGTTATTTCATCCCAAACAAGTCGGATAGCTAACACTTTGACAATAAACAAATTGACTGAAATCCTGATAATAAAAATATTTTAGGTTACGGTAGTTTTCGTTTTAAGAACTTCGGTCACCGCCGTCGGAGTTTCTCTTCCACTCTTCTAATTTCTGTACCAGTTTAAAAGCTCCTCCTATTTTAATATACCAGTTATCAAAACACATCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23509</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1421227</contig_pos>
        <strand>+</strand>
        <context>GGAGCCAGAA[A/C]GGAAGTCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAAATTTGAGAGTAGTACAAATGAGAAATTGGAGAGAGATGGAGCCAGAA</left_flank>
        <right_flank>GGAAGTCAAAAATCAATCTGTTTCGGAAAGAATCGATTTCTATTTTAGCG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTATGAAAACGCTTCTTCTATTAATTTGCTCTCTGTGTGGTTATGTACAAGGACAGGTAGCTTTTTGTCCCTGAAAATGAACTTGAACGACTCCATTCAGAATATAACGGTTGCTATCATTGGAGCAGGATTTGCTGGATTGAGAGCTGCTCAACGATTCGAACAACTAGGAATAAACTATATGATATTCGAAGGTTCCGACAGAGTCGGTGGAAGAGTATTCCCCTTTTCCTATCAAAGTGGATATCTTCAATATGGTGCGGAGTATGTGAATGGAGAGGATAATGAAATTTATGAAATTGTGAAAAAGAATAATCTGTTGTCTGCAACAGAAATTGATGAAGAGGGATACGAAACGGTAGTATATGGACAAGAAGTCAACAAGTGAGATCCTCGCTTTTTTGGATAATTTTCTTTTTTTTTCAGCAAGATGTACAAAATCTGGGATAAATTTGAGAGTAGTACAAATGAGAAATTGGAGAGAGATGGAGCCAGAAAGGAAGTCAAAAATCAATCTGTTTCGGAAAGAATCGATTTCTATTTTAGCGATTTTATGAAAGCACAAAAGCTCAGCCAGTCAGAACAAACTGTGATGCAGAATATGAATAAATTGTTCAAAAATCAGTATCAACTGGAATGGTCCGCTCCTTCCACTGATGTAAGAAATTTATATTTGAAATTTATCGATATTCAAAATTTAGTTATGCTTGAGAAATTTCGACACTTGGGATTCCGGAGTCGATTCTGAAGCAACGCTAAACGAAATTGGATTCAAGAGCATTCTAGATGAATTGGCTTCAAAAGTTCCTAAAACCAAAATCGGGATGTCTTCCAAAGTTGTTAATGTGGACTATACAGGTTTGTATATGCTTATAAAAATGTTAATTTCAGTTTCTTTAGGTACCAAAGTCAAAATTATGCTCTCAAATGGACAGTATTTTCTCTTTGATTCCGTTATTATCACAGCCTCTCTTGGATATCTGAAGAAGCACAAAACC</canonical>
            <polymorphic>TGCTATGAAAACGCTTCTTCTATTAATTTGCTCTCTGTGTGGTTATGTACAAGGACAGGTAGCTTTTTGTCCCTGAAAATGAACTTGAACGACTCCATTCAGAATATAACGGTTGCTATCATTGGAGCAGGATTTGCTGGATTGAGAGCTGCTCAACGATTCGAACAACTAGGAATAAACTATATGATATTCGAAGGTTCCGACAGAGTCGGTGGAAGAGTATTCCCCTTTTCCTATCAAAGTGGATATCTTCAATATGGTGCGGAGTATGTGAATGGAGAGGATAATGAAATTTATGAAATTGTGAAAAAGAATAATCTGTTGTCTGCAACAGAAATTGATGAAGAGGGATACGAAACGGTAGTATATGGACAAGAAGTCAACAAGTGAGATCCTCGCTTTTTTGGATAATTTTCTTTTTTTTTCAGCAAGATGTACAAAATCTGGGATAAATTTGAGAGTAGTACAAATGAGAAATTGGAGAGAGATGGAGCCAGAAMGGAAGTCAAAAATCAATCTGTTTCGGAAAGAATCGATTTCTATTTTAGCGATTTTATGAAAGCACAAAAGCTCAGCCAGTCAGAACAAACTGTGATGCAGAATATGAATAAATTGTTCAAAAATCAGTATCAACTGGAATGGTCCGCTCCTTCCACTGATGTAAGAAATTTATATTTGAAATTTATCGATATTCAAAATTTAGTTATGCTTGAGAAATTTCGACACTTGGGATTCCGGAGTCGATTCTGAAGCAACGCTAAACGAAATTGGATTCAAGAGCATTCTAGATGAATTGGCTTCAAAAGTTCCTAAAACCAAAATCGGGATGTCTTCCAAAGTTGTTAATGTGGACTATACAGGTTTGTATATGCTTATAAAAATGTTAATTTCAGTTTCTTTAGGTACCAAAGTCAAAATTATGCTCTCAAATGGACAGTATTTTCTCTTTGATTCCGTTATTATCACAGCCTCTCTTGGATATCTGAAGAAGCACAAAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACGGTAGTATATGGACAAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATATTCTGCATCACAGTTTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACGGTAGTATATGGACAAGAAGTCAACAAGTGAGATCCTCGCTTTTTTGGATAATTTTCTTTTTTTTTCAGCAAGATGTACAAAATCTGGGATAAATTTGAGAGTAGTACAAATGAGAAATTGGAGAGAGATGGAGCCAGAAAGGAAGTCAAAAATCAATCTGTTTCGGAAAGAATCGATTTCTATTTTAGCGATTTTATGAAAGCACAAAAGCTCAGCCAGTCAGAACAAACTGTGATGCAGAATAT</canonical_amplicon>
		<polymorphic_amplicon>AAACGGTAGTATATGGACAAGAAGTCAACAAGTGAGATCCTCGCTTTTTTGGATAATTTTCTTTTTTTTTCAGCAAGATGTACAAAATCTGGGATAAATTTGAGAGTAGTACAAATGAGAAATTGGAGAGAGATGGAGCCAGAAMGGAAGTCAAAAATCAATCTGTTTCGGAAAGAATCGATTTCTATTTTAGCGATTTTATGAAAGCACAAAAGCTCAGCCAGTCAGAACAAACTGTGATGCAGAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23510</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1421256</contig_pos>
        <strand>+</strand>
        <context>TGTTTCGGAA[A/C]GAATCGATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGGAGAGAGATGGAGCCAGAAAGGAAGTCAAAAATCAATCTGTTTCGGAA</left_flank>
        <right_flank>GAATCGATTTCTATTTTAGCGATTTTATGAAAGCACAAAAGCTCAGCCAG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCTCTGTGTGGTTATGTACAAGGACAGGTAGCTTTTTGTCCCTGAAAATGAACTTGAACGACTCCATTCAGAATATAACGGTTGCTATCATTGGAGCAGGATTTGCTGGATTGAGAGCTGCTCAACGATTCGAACAACTAGGAATAAACTATATGATATTCGAAGGTTCCGACAGAGTCGGTGGAAGAGTATTCCCCTTTTCCTATCAAAGTGGATATCTTCAATATGGTGCGGAGTATGTGAATGGAGAGGATAATGAAATTTATGAAATTGTGAAAAAGAATAATCTGTTGTCTGCAACAGAAATTGATGAAGAGGGATACGAAACGGTAGTATATGGACAAGAAGTCAACAAGTGAGATCCTCGCTTTTTTGGATAATTTTCTTTTTTTTTCAGCAAGATGTACAAAATCTGGGATAAATTTGAGAGTAGTACAAATGAGAAATTGGAGAGAGATGGAGCCAGAAAGGAAGTCAAAAATCAATCTGTTTCGGAAAGAATCGATTTCTATTTTAGCGATTTTATGAAAGCACAAAAGCTCAGCCAGTCAGAACAAACTGTGATGCAGAATATGAATAAATTGTTCAAAAATCAGTATCAACTGGAATGGTCCGCTCCTTCCACTGATGTAAGAAATTTATATTTGAAATTTATCGATATTCAAAATTTAGTTATGCTTGAGAAATTTCGACACTTGGGATTCCGGAGTCGATTCTGAAGCAACGCTAAACGAAATTGGATTCAAGAGCATTCTAGATGAATTGGCTTCAAAAGTTCCTAAAACCAAAATCGGGATGTCTTCCAAAGTTGTTAATGTGGACTATACAGGTTTGTATATGCTTATAAAAATGTTAATTTCAGTTTCTTTAGGTACCAAAGTCAAAATTATGCTCTCAAATGGACAGTATTTTCTCTTTGATTCCGTTATTATCACAGCCTCTCTTGGATATCTGAAGAAGCACAAAACCACATTATTCACTCCTGCTCTTTCTGTCTC</canonical>
            <polymorphic>GCTCTCTGTGTGGTTATGTACAAGGACAGGTAGCTTTTTGTCCCTGAAAATGAACTTGAACGACTCCATTCAGAATATAACGGTTGCTATCATTGGAGCAGGATTTGCTGGATTGAGAGCTGCTCAACGATTCGAACAACTAGGAATAAACTATATGATATTCGAAGGTTCCGACAGAGTCGGTGGAAGAGTATTCCCCTTTTCCTATCAAAGTGGATATCTTCAATATGGTGCGGAGTATGTGAATGGAGAGGATAATGAAATTTATGAAATTGTGAAAAAGAATAATCTGTTGTCTGCAACAGAAATTGATGAAGAGGGATACGAAACGGTAGTATATGGACAAGAAGTCAACAAGTGAGATCCTCGCTTTTTTGGATAATTTTCTTTTTTTTTCAGCAAGATGTACAAAATCTGGGATAAATTTGAGAGTAGTACAAATGAGAAATTGGAGAGAGATGGAGCCAGAAAGGAAGTCAAAAATCAATCTGTTTCGGAAMGAATCGATTTCTATTTTAGCGATTTTATGAAAGCACAAAAGCTCAGCCAGTCAGAACAAACTGTGATGCAGAATATGAATAAATTGTTCAAAAATCAGTATCAACTGGAATGGTCCGCTCCTTCCACTGATGTAAGAAATTTATATTTGAAATTTATCGATATTCAAAATTTAGTTATGCTTGAGAAATTTCGACACTTGGGATTCCGGAGTCGATTCTGAAGCAACGCTAAACGAAATTGGATTCAAGAGCATTCTAGATGAATTGGCTTCAAAAGTTCCTAAAACCAAAATCGGGATGTCTTCCAAAGTTGTTAATGTGGACTATACAGGTTTGTATATGCTTATAAAAATGTTAATTTCAGTTTCTTTAGGTACCAAAGTCAAAATTATGCTCTCAAATGGACAGTATTTTCTCTTTGATTCCGTTATTATCACAGCCTCTCTTGGATATCTGAAGAAGCACAAAACCACATTATTCACTCCTGCTCTTTCTGTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACGGTAGTATATGGACAAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATATTCTGCATCACAGTTTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACGGTAGTATATGGACAAGAAGTCAACAAGTGAGATCCTCGCTTTTTTGGATAATTTTCTTTTTTTTTCAGCAAGATGTACAAAATCTGGGATAAATTTGAGAGTAGTACAAATGAGAAATTGGAGAGAGATGGAGCCAGAAAGGAAGTCAAAAATCAATCTGTTTCGGAAAGAATCGATTTCTATTTTAGCGATTTTATGAAAGCACAAAAGCTCAGCCAGTCAGAACAAACTGTGATGCAGAATAT</canonical_amplicon>
		<polymorphic_amplicon>AAACGGTAGTATATGGACAAGAAGTCAACAAGTGAGATCCTCGCTTTTTTGGATAATTTTCTTTTTTTTTCAGCAAGATGTACAAAATCTGGGATAAATTTGAGAGTAGTACAAATGAGAAATTGGAGAGAGATGGAGCCAGAAAGGAAGTCAAAAATCAATCTGTTTCGGAAMGAATCGATTTCTATTTTAGCGATTTTATGAAAGCACAAAAGCTCAGCCAGTCAGAACAAACTGTGATGCAGAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23511</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1434082</contig_pos>
        <strand>+</strand>
        <context>ACAAATACAG[A/G]AATCGAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAATATCAAACATTTCAGGTTGGGCTTAAAAACAAGACAACAAATACAG</left_flank>
        <right_flank>AATCGAAAATTTATTGAATTTTTTAATATGGATTTATAGATATTTGTGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATAATGGGCCTCGTTTTGGAGGTCTCCCGGTGAACATCACTCCATCTCTTCTGAGTCGGCTGAGATCCTAAGGATGGTTGTCAGGCAGGGGAGCTCCTAGGTTAGTATGCATACTCCCTAGTGGCTCAGCAGAGATCGTGTGATAGGTTCCCCCGAGATAACCTAGGGTACATCCCGGGAATTTTCTGAGCTCTACCTGAGGCCTGTGTTGCAAAAAATAACTAGATGCCAAGTATAGTTTTTGAAAAATGTTTAATTTTCGTTTTTTGCAGCTTTTTTCGTTAGCTCTTTTTTCGTTAGCTTTTCGTCAAGTCCGTCAGGTTCGTCATGTCCGTCAGGTTCGTCCGTCAAGTTCGTCCGTCGGGTTTGTCCGTCAGGTTTTCTCGTCAGGTTCGAGGGAATATTATGTTAATGTAAAATCATCCTAAGAGGATATTAATACCCTTTACAATATCAAACATTTCAGGTTGGGCTTAAAAACAAGACAACAAATACAGGAATCGAAAATTTATTGAATTTTTTAATATGGATTTATAGATATTTGTGGCCCTAAAGAGGGCCGTTGGGTTCGGTATATGGGGGATCAAAGAGTCCGTTCTTATTCCTTGTCTCCTCCAGTCTTCTTTGGGAGAAGAACAGCTTGGATGTTTGGAAGAACTCCTCCTTGGGCGATGGTGACTCCAGCCAACAGCTTGTTTAATTCCTCGTCGTTACGGACGGCAAGTTGAAGATGTCTTGGGGCAATTCTGGTCTTCTTGTTGTCACGGGCAGCGTTTCCAGCCAACTCGAGAACCTCAGCAGCGAGGTATTCGAGAACGGCAGCCAGGTAAACTGGGGCTCCGGCTCCAACACGTTGGGCATAGTTTCCTTTACGGAGAATACGATGAAGACGTCCGACTGGGAATTGGAGTCCGGCTCTTGAAGAGCGAGACTTGGCCTTTCCTCCGGTCTTTGCTTTTCCTCCCTTTCCGCGTCCAGACATGGTTGATGAGTTGGTA</canonical>
            <polymorphic>ATATAATGGGCCTCGTTTTGGAGGTCTCCCGGTGAACATCACTCCATCTCTTCTGAGTCGGCTGAGATCCTAAGGATGGTTGTCAGGCAGGGGAGCTCCTAGGTTAGTATGCATACTCCCTAGTGGCTCAGCAGAGATCGTGTGATAGGTTCCCCCGAGATAACCTAGGGTACATCCCGGGAATTTTCTGAGCTCTACCTGAGGCCTGTGTTGCAAAAAATAACTAGATGCCAAGTATAGTTTTTGAAAAATGTTTAATTTTCGTTTTTTGCAGCTTTTTTCGTTAGCTCTTTTTTCGTTAGCTTTTCGTCAAGTCCGTCAGGTTCGTCATGTCCGTCAGGTTCGTCCGTCAAGTTCGTCCGTCGGGTTTGTCCGTCAGGTTTTCTCGTCAGGTTCGAGGGAATATTATGTTAATGTAAAATCATCCTAAGAGGATATTAATACCCTTTACAATATCAAACATTTCAGGTTGGGCTTAAAAACAAGACAACAAATACAGRAATCGAAAATTTATTGAATTTTTTAATATGGATTTATAGATATTTGTGGCCCTAAAGAGGGCCGTTGGGTTCGGTATATGGGGGATCAAAGAGTCCGTTCTTATTCCTTGTCTCCTCCAGTCTTCTTTGGGAGAAGAACAGCTTGGATGTTTGGAAGAACTCCTCCTTGGGCGATGGTGACTCCAGCCAACAGCTTGTTTAATTCCTCGTCGTTACGGACGGCAAGTTGAAGATGTCTTGGGGCAATTCTGGTCTTCTTGTTGTCACGGGCAGCGTTTCCAGCCAACTCGAGAACCTCAGCAGCGAGGTATTCGAGAACGGCAGCCAGGTAAACTGGGGCTCCGGCTCCAACACGTTGGGCATAGTTTCCTTTACGGAGAATACGATGAAGACGTCCGACTGGGAATTGGAGTCCGGCTCTTGAAGAGCGAGACTTGGCCTTTCCTCCGGTCTTTGCTTTTCCTCCCTTTCCGCGTCCAGACATGGTTGATGAGTTGGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>445 231 91 90 88 55</canonical_bands>
                <polymorphic_bands>536 231 90 88 55</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTAGGAACTGAGGATATTAATTG</pcr_primer_p1>
		<pcr_primer_p2>TTTAGGGCCACAAATATCTATAA</pcr_primer_p2>
		<pcr_amplicon_size>795</pcr_amplicon_size>
		<canonical_amplicon>GGAATCGAAAATTTATTGAATTTTTTAATATGGATTTATAGATATTTGTGGCCCTAAA</canonical_amplicon>
		<polymorphic_amplicon>GRAATCGAAAATTTATTGAATTTTTTAATATGGATTTATAGATATTTGTGGCCCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23512</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1436056</contig_pos>
        <strand>+</strand>
        <context>AGGAAGCATA[A/T]TAGAATCGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTAGATATAAAAAAGAGCGTAGTTCGTATTTTTATTTTCCAGGAAGCATA</left_flank>
        <right_flank>TAGAATCGCACCGGTGCCTATGATATGCAGGCCTGTAATATGCAGTAGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTTCTCCTTCATCCGTGCGCTTTACAAACGGCTTACAATTCGACAGTTGCCCATCATCCAATGTCATGAAAACTTTAAACCAATTTCCATGGAGGAATTTCCATGGAACTTCTCGGGTTATTGAGGCGGCGCCGAGCCGTTCTTCATCCGTCCGCGCATCTTTCTTTCTTTCTTTTTCATACACTTCTTCATTTACGAATACAGTATTGGCTCCCATTCAAAATCTACATTCAAAAATGGTGGTGTAAAAACTGAACAGGATAAAATTTATTTATTCAAGGAGATAAAAAGGATAGAACTTTTGTGGCCCTGGATTAACATTATTTTTCTTAAGGCCTCTTAGTGATGCCTTTGTTCTAATGAAACTATTATGCTTTTCAAATTTTTCTTTTTTAATGTTTGAAAATATTTAGCTGACGGTATTCTGGGATGATTCCGGAAATTCTAGATATAAAAAAGAGCGTAGTTCGTATTTTTATTTTCCAGGAAGCATATTAGAATCGCACCGGTGCCTATGATATGCAGGCCTGTAATATGCAGTAGTACACCATTAAATTTCATAATTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGGATTTTTGTTTGTAGCTAGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACACACAAGTTCAACTCCTCGAAAGGCATATTTAAACGGAAGTTCGAGAACATTATTTTTTCATGTCTCCCCACCTTTAAAAAAAATGTTCAAATTTATTTTTTTAAAGCTTTGCTTATATCATTGTTGTTGTTGGTAACGAATTGATTAAAAATTGAATCCAATTTGTCGTTCGATGTCTAAATTTACGAGGTTTAAAAATAAAATCAACTGGTCGCAGGAATTTTGAAAAATCGAATCACATTCTTTCAAAGGACGTATACAAAACTATTTTTGATTTTGGAAAACAGGAAAATACAGATAACGCAAATTTATTCAATTAAATAAGAG</canonical>
            <polymorphic>ATTTTTTTCTCCTTCATCCGTGCGCTTTACAAACGGCTTACAATTCGACAGTTGCCCATCATCCAATGTCATGAAAACTTTAAACCAATTTCCATGGAGGAATTTCCATGGAACTTCTCGGGTTATTGAGGCGGCGCCGAGCCGTTCTTCATCCGTCCGCGCATCTTTCTTTCTTTCTTTTTCATACACTTCTTCATTTACGAATACAGTATTGGCTCCCATTCAAAATCTACATTCAAAAATGGTGGTGTAAAAACTGAACAGGATAAAATTTATTTATTCAAGGAGATAAAAAGGATAGAACTTTTGTGGCCCTGGATTAACATTATTTTTCTTAAGGCCTCTTAGTGATGCCTTTGTTCTAATGAAACTATTATGCTTTTCAAATTTTTCTTTTTTAATGTTTGAAAATATTTAGCTGACGGTATTCTGGGATGATTCCGGAAATTCTAGATATAAAAAAGAGCGTAGTTCGTATTTTTATTTTCCAGGAAGCATAWTAGAATCGCACCGGTGCCTATGATATGCAGGCCTGTAATATGCAGTAGTACACCATTAAATTTCATAATTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGGATTTTTGTTTGTAGCTAGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACACACAAGTTCAACTCCTCGAAAGGCATATTTAAACGGAAGTTCGAGAACATTATTTTTTCATGTCTCCCCACCTTTAAAAAAAATGTTCAAATTTATTTTTTTAAAGCTTTGCTTATATCATTGTTGTTGTTGGTAACGAATTGATTAAAAATTGAATCCAATTTGTCGTTCGATGTCTAAATTTACGAGGTTTAAAAATAAAATCAACTGGTCGCAGGAATTTTGAAAAATCGAATCACATTCTTTCAAAGGACGTATACAAAACTATTTTTGATTTTGGAAAACAGGAAAATACAGATAACGCAAATTTATTCAATTAAATAAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAAACTATTATGCTTTTCAAAT</pcr_primer_p1>
		<pcr_primer_p2>AACAAAAATCCTACGAAAAATCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATGAAACTATTATGCTTTTCAAATTTTTCTTTTTTAATGTTTGAAAATATTTAGCTGACGGTATTCTGGGATGATTCCGGAAATTCTAGATATAAAAAAGAGCGTAGTTCGTATTTTTATTTTCCAGGAAGCATATTAGAATCGCACCGGTGCCTATGATATGCAGGCCTGTAATATGCAGTAGTACACCATTAAATTTCATAATTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGGATTTTTGTT</canonical_amplicon>
		<polymorphic_amplicon>AATGAAACTATTATGCTTTTCAAATTTTTCTTTTTTAATGTTTGAAAATATTTAGCTGACGGTATTCTGGGATGATTCCGGAAATTCTAGATATAAAAAAGAGCGTAGTTCGTATTTTTATTTTCCAGGAAGCATAWTAGAATCGCACCGGTGCCTATGATATGCAGGCCTGTAATATGCAGTAGTACACCATTAAATTTCATAATTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGGATTTTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23513</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1436116</contig_pos>
        <strand>+</strand>
        <context>ACACCATTAA[A/G]TTTCATAMTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCGGTGCCTATGATATGCAGGCCTGTAATATGCAGTAGTACACCATTAA</left_flank>
        <right_flank>TTTCATAATTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGGATTTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCAATGTCATGAAAACTTTAAACCAATTTCCATGGAGGAATTTCCATGGAACTTCTCGGGTTATTGAGGCGGCGCCGAGCCGTTCTTCATCCGTCCGCGCATCTTTCTTTCTTTCTTTTTCATACACTTCTTCATTTACGAATACAGTATTGGCTCCCATTCAAAATCTACATTCAAAAATGGTGGTGTAAAAACTGAACAGGATAAAATTTATTTATTCAAGGAGATAAAAAGGATAGAACTTTTGTGGCCCTGGATTAACATTATTTTTCTTAAGGCCTCTTAGTGATGCCTTTGTTCTAATGAAACTATTATGCTTTTCAAATTTTTCTTTTTTAATGTTTGAAAATATTTAGCTGACGGTATTCTGGGATGATTCCGGAAATTCTAGATATAAAAAAGAGCGTAGTTCGTATTTTTATTTTCCAGGAAGCATATTAGAATCGCACCGGTGCCTATGATATGCAGGCCTGTAATATGCAGTAGTACACCATTAAATTTCATAATTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGGATTTTTGTTTGTAGCTAGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACACACAAGTTCAACTCCTCGAAAGGCATATTTAAACGGAAGTTCGAGAACATTATTTTTTCATGTCTCCCCACCTTTAAAAAAAATGTTCAAATTTATTTTTTTAAAGCTTTGCTTATATCATTGTTGTTGTTGGTAACGAATTGATTAAAAATTGAATCCAATTTGTCGTTCGATGTCTAAATTTACGAGGTTTAAAAATAAAATCAACTGGTCGCAGGAATTTTGAAAAATCGAATCACATTCTTTCAAAGGACGTATACAAAACTATTTTTGATTTTGGAAAACAGGAAAATACAGATAACGCAAATTTATTCAATTAAATAAGAGAGAAGATGGATTAGTGAACGTTTGTGGCCCTAAAGAGGGCCGTTGGGTTCGGTTAAGTTT</canonical>
            <polymorphic>ATCCAATGTCATGAAAACTTTAAACCAATTTCCATGGAGGAATTTCCATGGAACTTCTCGGGTTATTGAGGCGGCGCCGAGCCGTTCTTCATCCGTCCGCGCATCTTTCTTTCTTTCTTTTTCATACACTTCTTCATTTACGAATACAGTATTGGCTCCCATTCAAAATCTACATTCAAAAATGGTGGTGTAAAAACTGAACAGGATAAAATTTATTTATTCAAGGAGATAAAAAGGATAGAACTTTTGTGGCCCTGGATTAACATTATTTTTCTTAAGGCCTCTTAGTGATGCCTTTGTTCTAATGAAACTATTATGCTTTTCAAATTTTTCTTTTTTAATGTTTGAAAATATTTAGCTGACGGTATTCTGGGATGATTCCGGAAATTCTAGATATAAAAAAGAGCGTAGTTCGTATTTTTATTTTCCAGGAAGCATATTAGAATCGCACCGGTGCCTATGATATGCAGGCCTGTAATATGCAGTAGTACACCATTAARTTTCATAATTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGGATTTTTGTTTGTAGCTAGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACACACAAGTTCAACTCCTCGAAAGGCATATTTAAACGGAAGTTCGAGAACATTATTTTTTCATGTCTCCCCACCTTTAAAAAAAATGTTCAAATTTATTTTTTTAAAGCTTTGCTTATATCATTGTTGTTGTTGGTAACGAATTGATTAAAAATTGAATCCAATTTGTCGTTCGATGTCTAAATTTACGAGGTTTAAAAATAAAATCAACTGGTCGCAGGAATTTTGAAAAATCGAATCACATTCTTTCAAAGGACGTATACAAAACTATTTTTGATTTTGGAAAACAGGAAAATACAGATAACGCAAATTTATTCAATTAAATAAGAGAGAAGATGGATTAGTGAACGTTTGTGGCCCTAAAGAGGGCCGTTGGGTTCGGTTAAGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>204 169 116 113 90 87 82 60 40 39</canonical_bands>
                <polymorphic_bands>317 169 116 90 87 82 60 40 39</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>196 169 116 113 87 73 60 49 39 26 20 14 11 10 9 8</canonical_bands>
                <polymorphic_bands>196 169 121 116 87 73 60 49 39 26 20 14 11 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTATGCTTTTCAAATTTTTCTT</pcr_primer_p1>
		<pcr_primer_p2>TAGCTACAAACAAAAATCCTACG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATTATGCTTTTCAAATTTTTCTTTTTTAATGTTTGAAAATATTTAGCTGACGGTATTCTGGGATGATTCCGGAAATTCTAGATATAAAAAAGAGCGTAGTTCGTATTTTTATTTTCCAGGAAGCATATTAGAATCGCACCGGTGCCTATGATATGCAGGCCTGTAATATGCAGTAGTACACCATTAAATTTCATAATTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGGATTTTTGTTTGTAGCTA</canonical_amplicon>
		<polymorphic_amplicon>CTATTATGCTTTTCAAATTTTTCTTTTTTAATGTTTGAAAATATTTAGCTGACGGTATTCTGGGATGATTCCGGAAATTCTAGATATAAAAAAGAGCGTAGTTCGTATTTTTATTTTCCAGGAAGCATATTAGAATCGCACCGGTGCCTATGATATGCAGGCCTGTAATATGCAGTAGTACACCATTAARTTTCATAATTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGGATTTTTGTTTGTAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23514</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1436124</contig_pos>
        <strand>+</strand>
        <context>AARTTTCATA[A/C]TTTTAAAGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTATGATATGCAGGCCTGTAATATGCAGTAGTACACCATTAAATTTCATA</left_flank>
        <right_flank>TTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGGATTTTTGTTTGTAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATGAAAACTTTAAACCAATTTCCATGGAGGAATTTCCATGGAACTTCTCGGGTTATTGAGGCGGCGCCGAGCCGTTCTTCATCCGTCCGCGCATCTTTCTTTCTTTCTTTTTCATACACTTCTTCATTTACGAATACAGTATTGGCTCCCATTCAAAATCTACATTCAAAAATGGTGGTGTAAAAACTGAACAGGATAAAATTTATTTATTCAAGGAGATAAAAAGGATAGAACTTTTGTGGCCCTGGATTAACATTATTTTTCTTAAGGCCTCTTAGTGATGCCTTTGTTCTAATGAAACTATTATGCTTTTCAAATTTTTCTTTTTTAATGTTTGAAAATATTTAGCTGACGGTATTCTGGGATGATTCCGGAAATTCTAGATATAAAAAAGAGCGTAGTTCGTATTTTTATTTTCCAGGAAGCATATTAGAATCGCACCGGTGCCTATGATATGCAGGCCTGTAATATGCAGTAGTACACCATTAAATTTCATAATTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGGATTTTTGTTTGTAGCTAGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACACACAAGTTCAACTCCTCGAAAGGCATATTTAAACGGAAGTTCGAGAACATTATTTTTTCATGTCTCCCCACCTTTAAAAAAAATGTTCAAATTTATTTTTTTAAAGCTTTGCTTATATCATTGTTGTTGTTGGTAACGAATTGATTAAAAATTGAATCCAATTTGTCGTTCGATGTCTAAATTTACGAGGTTTAAAAATAAAATCAACTGGTCGCAGGAATTTTGAAAAATCGAATCACATTCTTTCAAAGGACGTATACAAAACTATTTTTGATTTTGGAAAACAGGAAAATACAGATAACGCAAATTTATTCAATTAAATAAGAGAGAAGATGGATTAGTGAACGTTTGTGGCCCTAAAGAGGGCCGTTGGGTTCGGTTAAGTTTGGTTGCAT</canonical>
            <polymorphic>TCATGAAAACTTTAAACCAATTTCCATGGAGGAATTTCCATGGAACTTCTCGGGTTATTGAGGCGGCGCCGAGCCGTTCTTCATCCGTCCGCGCATCTTTCTTTCTTTCTTTTTCATACACTTCTTCATTTACGAATACAGTATTGGCTCCCATTCAAAATCTACATTCAAAAATGGTGGTGTAAAAACTGAACAGGATAAAATTTATTTATTCAAGGAGATAAAAAGGATAGAACTTTTGTGGCCCTGGATTAACATTATTTTTCTTAAGGCCTCTTAGTGATGCCTTTGTTCTAATGAAACTATTATGCTTTTCAAATTTTTCTTTTTTAATGTTTGAAAATATTTAGCTGACGGTATTCTGGGATGATTCCGGAAATTCTAGATATAAAAAAGAGCGTAGTTCGTATTTTTATTTTCCAGGAAGCATATTAGAATCGCACCGGTGCCTATGATATGCAGGCCTGTAATATGCAGTAGTACACCATTAAATTTCATAMTTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGGATTTTTGTTTGTAGCTAGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACACACAAGTTCAACTCCTCGAAAGGCATATTTAAACGGAAGTTCGAGAACATTATTTTTTCATGTCTCCCCACCTTTAAAAAAAATGTTCAAATTTATTTTTTTAAAGCTTTGCTTATATCATTGTTGTTGTTGGTAACGAATTGATTAAAAATTGAATCCAATTTGTCGTTCGATGTCTAAATTTACGAGGTTTAAAAATAAAATCAACTGGTCGCAGGAATTTTGAAAAATCGAATCACATTCTTTCAAAGGACGTATACAAAACTATTTTTGATTTTGGAAAACAGGAAAATACAGATAACGCAAATTTATTCAATTAAATAAGAGAGAAGATGGATTAGTGAACGTTTGTGGCCCTAAAGAGGGCCGTTGGGTTCGGTTAAGTTTGGTTGCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>196 169 116 113 87 81 60 49 39 20 18 14 11 10 9 8</canonical_bands>
                <polymorphic_bands>204 169 116 113 87 81 60 49 39 20 18 14 11 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGTAGTTCGTATTTTTATTTTC</pcr_primer_p1>
		<pcr_primer_p2>CTCGAACTTCCGTTTAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GCGTAGTTCGTATTTTTATTTTCCAGGAAGCATATTAGAATCGCACCGGTGCCTATGATATGCAGGCCTGTAATATGCAGTAGTACACCATTAAATTTCATAATTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGGATTTTTGTTTGTAGCTAGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACACACAAGTTCAACTCCTCGAAAGGCATATTTAAACGGAAGTTCGAG</canonical_amplicon>
		<polymorphic_amplicon>GCGTAGTTCGTATTTTTATTTTCCAGGAAGCATATTAGAATCGCACCGGTGCCTATGATATGCAGGCCTGTAATATGCAGTAGTACACCATTAAATTTCATAMTTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGGATTTTTGTTTGTAGCTAGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACACACAAGTTCAACTCCTCGAAAGGCATATTTAAACGGAAGTTCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23515</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1436400</contig_pos>
        <strand>+</strand>
        <context>ATTTGTCGTT[C/T]GATGTCTAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGTTGTTGTTGGTAACGAATTGATTAAAAATTGAATCCAATTTGTCGTT</left_flank>
        <right_flank>GATGTCTAAATTTACGAGGTTTAAAAATAAAATCAACTGGTCGCAGGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAGTGATGCCTTTGTTCTAATGAAACTATTATGCTTTTCAAATTTTTCTTTTTTAATGTTTGAAAATATTTAGCTGACGGTATTCTGGGATGATTCCGGAAATTCTAGATATAAAAAAGAGCGTAGTTCGTATTTTTATTTTCCAGGAAGCATATTAGAATCGCACCGGTGCCTATGATATGCAGGCCTGTAATATGCAGTAGTACACCATTAAATTTCATAATTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGGATTTTTGTTTGTAGCTAGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACACACAAGTTCAACTCCTCGAAAGGCATATTTAAACGGAAGTTCGAGAACATTATTTTTTCATGTCTCCCCACCTTTAAAAAAAATGTTCAAATTTATTTTTTTAAAGCTTTGCTTATATCATTGTTGTTGTTGGTAACGAATTGATTAAAAATTGAATCCAATTTGTCGTTCGATGTCTAAATTTACGAGGTTTAAAAATAAAATCAACTGGTCGCAGGAATTTTGAAAAATCGAATCACATTCTTTCAAAGGACGTATACAAAACTATTTTTGATTTTGGAAAACAGGAAAATACAGATAACGCAAATTTATTCAATTAAATAAGAGAGAAGATGGATTAGTGAACGTTTGTGGCCCTAAAGAGGGCCGTTGGGTTCGGTTAAGTTTGGTTGCATGAATCAGAAAGGTAATAAAATTATCCTCCGAATCCGTACAGGGTTCTTCCTTGACGCTTCAAAGCATAGACGACGTCCATGGCAGTGACGGTCTTTCTCTTGGCGTGCTCGCAGTAGGTGACGGCATCACGGATGACGTTCTCGAGGAACACCTTGAGAACTCCGCGAGTCTCCTCGTAGATGAGTCCAGAGATACGCTTGACTCCTCCTCTTCTGGCGAGACGGCGAATAGCTGGCTTCGTGATTCCTTGGATGTTGTCACGAAGAACTTTGCGA</canonical>
            <polymorphic>TTAGTGATGCCTTTGTTCTAATGAAACTATTATGCTTTTCAAATTTTTCTTTTTTAATGTTTGAAAATATTTAGCTGACGGTATTCTGGGATGATTCCGGAAATTCTAGATATAAAAAAGAGCGTAGTTCGTATTTTTATTTTCCAGGAAGCATATTAGAATCGCACCGGTGCCTATGATATGCAGGCCTGTAATATGCAGTAGTACACCATTAAATTTCATAATTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGGATTTTTGTTTGTAGCTAGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACACACAAGTTCAACTCCTCGAAAGGCATATTTAAACGGAAGTTCGAGAACATTATTTTTTCATGTCTCCCCACCTTTAAAAAAAATGTTCAAATTTATTTTTTTAAAGCTTTGCTTATATCATTGTTGTTGTTGGTAACGAATTGATTAAAAATTGAATCCAATTTGTCGTTYGATGTCTAAATTTACGAGGTTTAAAAATAAAATCAACTGGTCGCAGGAATTTTGAAAAATCGAATCACATTCTTTCAAAGGACGTATACAAAACTATTTTTGATTTTGGAAAACAGGAAAATACAGATAACGCAAATTTATTCAATTAAATAAGAGAGAAGATGGATTAGTGAACGTTTGTGGCCCTAAAGAGGGCCGTTGGGTTCGGTTAAGTTTGGTTGCATGAATCAGAAAGGTAATAAAATTATCCTCCGAATCCGTACAGGGTTCTTCCTTGACGCTTCAAAGCATAGACGACGTCCATGGCAGTGACGGTCTTTCTCTTGGCGTGCTCGCAGTAGGTGACGGCATCACGGATGACGTTCTCGAGGAACACCTTGAGAACTCCGCGAGTCTCCTCGTAGATGAGTCCAGAGATACGCTTGACTCCTCCTCTTCTGGCGAGACGGCGAATAGCTGGCTTCGTGATTCCTTGGATGTTGTCACGAAGAACTTTGCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>346 306 133 129 61 25</canonical_bands>
                <polymorphic_bands>346 306 190 133 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTTGCTTATATCATTGTTG</pcr_primer_p1>
		<pcr_primer_p2>ACAAACGTTCACTAATCCATCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGCTTTGCTTATATCATTGTTGTTGTTGGTAACGAATTGATTAAAAATTGAATCCAATTTGTCGTTCGATGTCTAAATTTACGAGGTTTAAAAATAAAATCAACTGGTCGCAGGAATTTTGAAAAATCGAATCACATTCTTTCAAAGGACGTATACAAAACTATTTTTGATTTTGGAAAACAGGAAAATACAGATAACGCAAATTTATTCAATTAAATAAGAGAGAAGATGGATTAGTGAACGTTTGT</canonical_amplicon>
		<polymorphic_amplicon>AAGCTTTGCTTATATCATTGTTGTTGTTGGTAACGAATTGATTAAAAATTGAATCCAATTTGTCGTTYGATGTCTAAATTTACGAGGTTTAAAAATAAAATCAACTGGTCGCAGGAATTTTGAAAAATCGAATCACATTCTTTCAAAGGACGTATACAAAACTATTTTTGATTTTGGAAAACAGGAAAATACAGATAACGCAAATTTATTCAATTAAATAAGAGAGAAGATGGATTAGTGAACGTTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23516</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1437296</contig_pos>
        <strand>+</strand>
        <context>GCAGTTGGCC[A/C]CCAAGGCTGC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAACCGCCCGCAAATCGACCGGAGGAAAGGCTCCAAGAAAGCAGTTGGCC</left_flank>
        <right_flank>CCAAGGCTGCCCGCAAATCGGCCCCAGCTGCCGGAGGAGTCAAGAAGCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTCGTAGATGAGTCCAGAGATACGCTTGACTCCTCCTCTTCTGGCGAGACGGCGAATAGCTGGCTTCGTGATTCCTTGGATGTTGTCACGAAGAACTTTGCGATGGCGCTTGGCTCCTCCTTTTCCGAGGCCTTTTCCTCCCTTTCCACGTCCGGACATGTTGAATGCGATTGATGAAGACTCACAAGTGAGATGGTGTTAACTTCAGAATCGAATCCTTATATACCGAGATGTATTCTCTTGTGGTGGATGGGAGGAGTCACTTCTAACCCCTCTGTGGGGACACACCATACACTTACAGACGCTCTCCGAATGTTCCCCTCTTCTCTTCTCCATAGACTCCGCGCGGCCTCCGCACTCTTATCGCAGACACATATAAAAACCGTCTCTTCCCCTTCTTTTCTTCACAGTCCCAATCGGATTCCAATTGAAATGGCTCGTACCAAGCAAACCGCCCGCAAATCGACCGGAGGAAAGGCTCCAAGAAAGCAGTTGGCCCCCAAGGCTGCCCGCAAATCGGCCCCAGCTGCCGGAGGAGTCAAGAAGCCACATCGTTACCGCCCAGGAACTGTCGCTCTTCGTGAGATCAGACGTTACCAGAAGTCCACTGAGCTCCTTATCCGCAAGCTGCCATTCCAGCGTCTTGTTCGTGAGATCGCCCAGGATTTCAAGAGTGACCTTCGCTTCCAATCTTCCGCTGTCATGGCTCTTCAAGAGTCCGCTGAGGCTTACCTCGTCGGACTCTTGGAGGACTCCAACTTGTGCGCCATCCACGCCAAGCGAGTCACCATCATGTCCAAAGGACATCCAATTGGGCAGACGTATCCGAGGAGAGCGTGCTTAAATTTCCACTTTTGGATTTTGAGACCGTTTCGATTCACTGAAAAACTTAACCGAACCCAACGGCCCTCTTTAGGGCCACAATTTTTCAGAATCCATGTCACATGTTGTTAAAATGAATAAATTGTTCACTGTTTTCAGTCCATATCCTTTCTTTAC</canonical>
            <polymorphic>CCTCGTAGATGAGTCCAGAGATACGCTTGACTCCTCCTCTTCTGGCGAGACGGCGAATAGCTGGCTTCGTGATTCCTTGGATGTTGTCACGAAGAACTTTGCGATGGCGCTTGGCTCCTCCTTTTCCGAGGCCTTTTCCTCCCTTTCCACGTCCGGACATGTTGAATGCGATTGATGAAGACTCACAAGTGAGATGGTGTTAACTTCAGAATCGAATCCTTATATACCGAGATGTATTCTCTTGTGGTGGATGGGAGGAGTCACTTCTAACCCCTCTGTGGGGACACACCATACACTTACAGACGCTCTCCGAATGTTCCCCTCTTCTCTTCTCCATAGACTCCGCGCGGCCTCCGCACTCTTATCGCAGACACATATAAAAACCGTCTCTTCCCCTTCTTTTCTTCACAGTCCCAATCGGATTCCAATTGAAATGGCTCGTACCAAGCAAACCGCCCGCAAATCGACCGGAGGAAAGGCTCCAAGAAAGCAGTTGGCCMCCAAGGCTGCCCGCAAATCGGCCCCAGCTGCCGGAGGAGTCAAGAAGCCACATCGTTACCGCCCAGGAACTGTCGCTCTTCGTGAGATCAGACGTTACCAGAAGTCCACTGAGCTCCTTATCCGCAAGCTGCCATTCCAGCGTCTTGTTCGTGAGATCGCCCAGGATTTCAAGAGTGACCTTCGCTTCCAATCTTCCGCTGTCATGGCTCTTCAAGAGTCCGCTGAGGCTTACCTCGTCGGACTCTTGGAGGACTCCAACTTGTGCGCCATCCACGCCAAGCGAGTCACCATCATGTCCAAAGGACATCCAATTGGGCAGACGTATCCGAGGAGAGCGTGCTTAAATTTCCACTTTTGGATTTTGAGACCGTTTCGATTCACTGAAAAACTTAACCGAACCCAACGGCCCTCTTTAGGGCCACAATTTTTCAGAATCCATGTCACATGTTGTTAAAATGAATAAATTGTTCACTGTTTTCAGTCCATATCCTTTCTTTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>496 386 83 24 11</canonical_bands>
                <polymorphic_bands>520 386 83 11</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>478 365 115 24 18</canonical_bands>
                <polymorphic_bands>478 365 115 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTATCGCAGACACATATAAAA</pcr_primer_p1>
		<pcr_primer_p2>GACTTCTGGTAACGTCTGATCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTTATCGCAGACACATATAAAAACCGTCTCTTCCCCTTCTTTTCTTCACAGTCCCAATCGGATTCCAATTGAAATGGCTCGTACCAAGCAAACCGCCCGCAAATCGACCGGAGGAAAGGCTCCAAGAAAGCAGTTGGCCCCCAAGGCTGCCCGCAAATCGGCCCCAGCTGCCGGAGGAGTCAAGAAGCCACATCGTTACCGCCCAGGAACTGTCGCTCTTCGTGAGATCAGACGTTACCAGAAGTC</canonical_amplicon>
		<polymorphic_amplicon>TCTTATCGCAGACACATATAAAAACCGTCTCTTCCCCTTCTTTTCTTCACAGTCCCAATCGGATTCCAATTGAAATGGCTCGTACCAAGCAAACCGCCCGCAAATCGACCGGAGGAAAGGCTCCAAGAAAGCAGTTGGCCMCCAAGGCTGCCCGCAAATCGGCCCCAGCTGCCGGAGGAGTCAAGAAGCCACATCGTTACCGCCCAGGAACTGTCGCTCTTCGTGAGATCAGACGTTACCAGAAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23517</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1437471</contig_pos>
        <strand>+</strand>
        <context>GATTTCAAGA[C/G]TGACCTTCGC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAAGCTGCCATTCCAGCGTCTTGTTCGTGAGATCGCCCAGGATTTCAAGA</left_flank>
        <right_flank>TGACCTTCGCTTCCAATCTTCCGCTGTCATGGCTCTTCAAGAGTCCGCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAGACTCACAAGTGAGATGGTGTTAACTTCAGAATCGAATCCTTATATACCGAGATGTATTCTCTTGTGGTGGATGGGAGGAGTCACTTCTAACCCCTCTGTGGGGACACACCATACACTTACAGACGCTCTCCGAATGTTCCCCTCTTCTCTTCTCCATAGACTCCGCGCGGCCTCCGCACTCTTATCGCAGACACATATAAAAACCGTCTCTTCCCCTTCTTTTCTTCACAGTCCCAATCGGATTCCAATTGAAATGGCTCGTACCAAGCAAACCGCCCGCAAATCGACCGGAGGAAAGGCTCCAAGAAAGCAGTTGGCCCCCAAGGCTGCCCGCAAATCGGCCCCAGCTGCCGGAGGAGTCAAGAAGCCACATCGTTACCGCCCAGGAACTGTCGCTCTTCGTGAGATCAGACGTTACCAGAAGTCCACTGAGCTCCTTATCCGCAAGCTGCCATTCCAGCGTCTTGTTCGTGAGATCGCCCAGGATTTCAAGAGTGACCTTCGCTTCCAATCTTCCGCTGTCATGGCTCTTCAAGAGTCCGCTGAGGCTTACCTCGTCGGACTCTTGGAGGACTCCAACTTGTGCGCCATCCACGCCAAGCGAGTCACCATCATGTCCAAAGGACATCCAATTGGGCAGACGTATCCGAGGAGAGCGTGCTTAAATTTCCACTTTTGGATTTTGAGACCGTTTCGATTCACTGAAAAACTTAACCGAACCCAACGGCCCTCTTTAGGGCCACAATTTTTCAGAATCCATGTCACATGTTGTTAAAATGAATAAATTGTTCACTGTTTTCAGTCCATATCCTTTCTTTACTGTTCATCATCAAAACACGACAATGGTATCAGCTTGAAAAGATTCTATTGAAAAATCTCATTCGATTTATTTGAAATCTCATTCAGTCTGTCGTGTTCCTCGATGTGAATATTTATCTAAACAATGTTCAATGCCCTCTCTTTTGATTTTCTCAGCATTAAATTATTATCAATCA</canonical>
            <polymorphic>TGAAGACTCACAAGTGAGATGGTGTTAACTTCAGAATCGAATCCTTATATACCGAGATGTATTCTCTTGTGGTGGATGGGAGGAGTCACTTCTAACCCCTCTGTGGGGACACACCATACACTTACAGACGCTCTCCGAATGTTCCCCTCTTCTCTTCTCCATAGACTCCGCGCGGCCTCCGCACTCTTATCGCAGACACATATAAAAACCGTCTCTTCCCCTTCTTTTCTTCACAGTCCCAATCGGATTCCAATTGAAATGGCTCGTACCAAGCAAACCGCCCGCAAATCGACCGGAGGAAAGGCTCCAAGAAAGCAGTTGGCCCCCAAGGCTGCCCGCAAATCGGCCCCAGCTGCCGGAGGAGTCAAGAAGCCACATCGTTACCGCCCAGGAACTGTCGCTCTTCGTGAGATCAGACGTTACCAGAAGTCCACTGAGCTCCTTATCCGCAAGCTGCCATTCCAGCGTCTTGTTCGTGAGATCGCCCAGGATTTCAAGASTGACCTTCGCTTCCAATCTTCCGCTGTCATGGCTCTTCAAGAGTCCGCTGAGGCTTACCTCGTCGGACTCTTGGAGGACTCCAACTTGTGCGCCATCCACGCCAAGCGAGTCACCATCATGTCCAAAGGACATCCAATTGGGCAGACGTATCCGAGGAGAGCGTGCTTAAATTTCCACTTTTGGATTTTGAGACCGTTTCGATTCACTGAAAAACTTAACCGAACCCAACGGCCCTCTTTAGGGCCACAATTTTTCAGAATCCATGTCACATGTTGTTAAAATGAATAAATTGTTCACTGTTTTCAGTCCATATCCTTTCTTTACTGTTCATCATCAAAACACGACAATGGTATCAGCTTGAAAAGATTCTATTGAAAAATCTCATTCGATTTATTTGAAATCTCATTCAGTCTGTCGTGTTCCTCGATGTGAATATTTATCTAAACAATGTTCAATGCCCTCTCTTTTGATTTTCTCAGCATTAAATTATTATCAATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>142 88 78 68 63 52 47 45 45 41 35 34 29 28 24 24 22 17 15 14 14 12 12 10 9 8 7 6 6 3 2</canonical_bands>
                <polymorphic_bands>142 112 78 68 63 52 47 45 45 41 35 34 29 28 24 22 17 15 14 14 12 12 10 9 8 7 6 6 3 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>295 235 156 110 84 81 39</canonical_bands>
                <polymorphic_bands>295 235 191 156 84 39</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>415 235 156 110 84</canonical_bands>
                <polymorphic_bands>525 235 156 84</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGTCCACTGAGCTCCTTAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTAAGCACGCTCTCCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAGTCCACTGAGCTCCTTATCCGCAAGCTGCCATTCCAGCGTCTTGTTCGTGAGATCGCCCAGGATTTCAAGAGTGACCTTCGCTTCCAATCTTCCGCTGTCATGGCTCTTCAAGAGTCCGCTGAGGCTTACCTCGTCGGACTCTTGGAGGACTCCAACTTGTGCGCCATCCACGCCAAGCGAGTCACCATCATGTCCAAAGGACATCCAATTGGGCAGACGTATCCGAGGAGAGCGTGCTTAAATTT</canonical_amplicon>
		<polymorphic_amplicon>GAAGTCCACTGAGCTCCTTATCCGCAAGCTGCCATTCCAGCGTCTTGTTCGTGAGATCGCCCAGGATTTCAAGASTGACCTTCGCTTCCAATCTTCCGCTGTCATGGCTCTTCAAGAGTCCGCTGAGGCTTACCTCGTCGGACTCTTGGAGGACTCCAACTTGTGCGCCATCCACGCCAAGCGAGTCACCATCATGTCCAAAGGACATCCAATTGGGCAGACGTATCCGAGGAGAGCGTGCTTAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23518</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1437544</contig_pos>
        <strand>+</strand>
        <context>TCGGACTCTT[C/G]GAGGACTCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCTGTCATGGCTCTTCAAGAGTCCGCTGAGGCTTACCTCGTCGGACTCTT</left_flank>
        <right_flank>GAGGACTCCAACTTGTGCGCCATCCACGCCAAGCGAGTCACCATCATGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATGGGAGGAGTCACTTCTAACCCCTCTGTGGGGACACACCATACACTTACAGACGCTCTCCGAATGTTCCCCTCTTCTCTTCTCCATAGACTCCGCGCGGCCTCCGCACTCTTATCGCAGACACATATAAAAACCGTCTCTTCCCCTTCTTTTCTTCACAGTCCCAATCGGATTCCAATTGAAATGGCTCGTACCAAGCAAACCGCCCGCAAATCGACCGGAGGAAAGGCTCCAAGAAAGCAGTTGGCCCCCAAGGCTGCCCGCAAATCGGCCCCAGCTGCCGGAGGAGTCAAGAAGCCACATCGTTACCGCCCAGGAACTGTCGCTCTTCGTGAGATCAGACGTTACCAGAAGTCCACTGAGCTCCTTATCCGCAAGCTGCCATTCCAGCGTCTTGTTCGTGAGATCGCCCAGGATTTCAAGAGTGACCTTCGCTTCCAATCTTCCGCTGTCATGGCTCTTCAAGAGTCCGCTGAGGCTTACCTCGTCGGACTCTTGGAGGACTCCAACTTGTGCGCCATCCACGCCAAGCGAGTCACCATCATGTCCAAAGGACATCCAATTGGGCAGACGTATCCGAGGAGAGCGTGCTTAAATTTCCACTTTTGGATTTTGAGACCGTTTCGATTCACTGAAAAACTTAACCGAACCCAACGGCCCTCTTTAGGGCCACAATTTTTCAGAATCCATGTCACATGTTGTTAAAATGAATAAATTGTTCACTGTTTTCAGTCCATATCCTTTCTTTACTGTTCATCATCAAAACACGACAATGGTATCAGCTTGAAAAGATTCTATTGAAAAATCTCATTCGATTTATTTGAAATCTCATTCAGTCTGTCGTGTTCCTCGATGTGAATATTTATCTAAACAATGTTCAATGCCCTCTCTTTTGATTTTCTCAGCATTAAATTATTATCAATCAAGAATTTTTGTTTGGCGCCAATTTTGGATTCAAATCGTTTTACAAAAAAGATTCTGCAACGCTTCATAAATGT</canonical>
            <polymorphic>GGATGGGAGGAGTCACTTCTAACCCCTCTGTGGGGACACACCATACACTTACAGACGCTCTCCGAATGTTCCCCTCTTCTCTTCTCCATAGACTCCGCGCGGCCTCCGCACTCTTATCGCAGACACATATAAAAACCGTCTCTTCCCCTTCTTTTCTTCACAGTCCCAATCGGATTCCAATTGAAATGGCTCGTACCAAGCAAACCGCCCGCAAATCGACCGGAGGAAAGGCTCCAAGAAAGCAGTTGGCCCCCAAGGCTGCCCGCAAATCGGCCCCAGCTGCCGGAGGAGTCAAGAAGCCACATCGTTACCGCCCAGGAACTGTCGCTCTTCGTGAGATCAGACGTTACCAGAAGTCCACTGAGCTCCTTATCCGCAAGCTGCCATTCCAGCGTCTTGTTCGTGAGATCGCCCAGGATTTCAAGAGTGACCTTCGCTTCCAATCTTCCGCTGTCATGGCTCTTCAAGAGTCCGCTGAGGCTTACCTCGTCGGACTCTTSGAGGACTCCAACTTGTGCGCCATCCACGCCAAGCGAGTCACCATCATGTCCAAAGGACATCCAATTGGGCAGACGTATCCGAGGAGAGCGTGCTTAAATTTCCACTTTTGGATTTTGAGACCGTTTCGATTCACTGAAAAACTTAACCGAACCCAACGGCCCTCTTTAGGGCCACAATTTTTCAGAATCCATGTCACATGTTGTTAAAATGAATAAATTGTTCACTGTTTTCAGTCCATATCCTTTCTTTACTGTTCATCATCAAAACACGACAATGGTATCAGCTTGAAAAGATTCTATTGAAAAATCTCATTCGATTTATTTGAAATCTCATTCAGTCTGTCGTGTTCCTCGATGTGAATATTTATCTAAACAATGTTCAATGCCCTCTCTTTTGATTTTCTCAGCATTAAATTATTATCAATCAAGAATTTTTGTTTGGCGCCAATTTTGGATTCAAATCGTTTTACAAAAAAGATTCTGCAACGCTTCATAAATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTCCACTGAGCTCCTTAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTAAGCACGCTCTCCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAGTCCACTGAGCTCCTTATCCGCAAGCTGCCATTCCAGCGTCTTGTTCGTGAGATCGCCCAGGATTTCAAGAGTGACCTTCGCTTCCAATCTTCCGCTGTCATGGCTCTTCAAGAGTCCGCTGAGGCTTACCTCGTCGGACTCTTGGAGGACTCCAACTTGTGCGCCATCCACGCCAAGCGAGTCACCATCATGTCCAAAGGACATCCAATTGGGCAGACGTATCCGAGGAGAGCGTGCTTAAATTT</canonical_amplicon>
		<polymorphic_amplicon>GAAGTCCACTGAGCTCCTTATCCGCAAGCTGCCATTCCAGCGTCTTGTTCGTGAGATCGCCCAGGATTTCAAGAGTGACCTTCGCTTCCAATCTTCCGCTGTCATGGCTCTTCAAGAGTCCGCTGAGGCTTACCTCGTCGGACTCTTSGAGGACTCCAACTTGTGCGCCATCCACGCCAAGCGAGTCACCATCATGTCCAAAGGACATCCAATTGGGCAGACGTATCCGAGGAGAGCGTGCTTAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23519</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1440819</contig_pos>
        <strand>-</strand>
        <context>GAGACGGTTT[A/T]TATATGTGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTGGAATCCGATTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTT</left_flank>
        <right_flank>TATATGTGTCTGCGATAAGAGTGTGGTGGCGGGGCGGAGTCTATGGAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCAATACGACATTTAAAATCTTATTAGTAAGAATTTAAGCACGCTCTCCTCGGATACGTCTGGCCAATTGGATGTCCTTTGGCATGATGGTGACTCGCTTGGCGTGGATGGCGCACAAGTTGGTGTCCTCGAAAAGTCCGACGAGGTAAGCCTCAGCGGACTCTTGAAGAGCCATGACAGCGGAAGATTGGAAGCGAAGGTCAGTCTTGAAATCCTGGGCGATCTCACGAACAAGACGCTGGAATGGCAGCTTGCGGATAAGGAGCTCAGTGGACTTCTGGTAACGTCTGATCTCACGAAGAGCGACGGTTCCTGGGCGGTAACGATGTGGCTTCTTGACTCCTCCGGCAGCTGGGGCCGATTTGCGGGCAGCCTTGGTGGCCAACTGCTTTCTTGAGCCTTTCCTCCGGTCGATTTGCGGGCGGTTTGCTTGGTACGAGCCATTTCAATTGGAATCCGATTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGTGGTGGCGGGGCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAGCGTCGGTAAGTGTATGGTGTGTCCCCACAGAGGGGTTAGAAGTGACTCCTCCCATCCACCACAAGTGAATACATCTCGGTATATAAGGATTCGATTCTGAAGTTAACACCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAAGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAGGAATCACGAAGCCAGCTATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCTGGACTCATCTACGAGGAGACTCGCGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACTGCCATGGACGTCGTCTATGCTTTGAAGCGTCAA</canonical>
            <polymorphic>AGTCAATACGACATTTAAAATCTTATTAGTAAGAATTTAAGCACGCTCTCCTCGGATACGTCTGGCCAATTGGATGTCCTTTGGCATGATGGTGACTCGCTTGGCGTGGATGGCGCACAAGTTGGTGTCCTCGAAAAGTCCGACGAGGTAAGCCTCAGCGGACTCTTGAAGAGCCATGACAGCGGAAGATTGGAAGCGAAGGTCAGTCTTGAAATCCTGGGCGATCTCACGAACAAGACGCTGGAATGGCAGCTTGCGGATAAGGAGCTCAGTGGACTTCTGGTAACGTCTGATCTCACGAAGAGCGACGGTTCCTGGGCGGTAACGATGTGGCTTCTTGACTCCTCCGGCAGCTGGGGCCGATTTGCGGGCAGCCTTGGTGGCCAACTGCTTTCTTGAGCCTTTCCTCCGGTCGATTTGCGGGCGGTTTGCTTGGTACGAGCCATTTCAATTGGAATCCGATTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTTWTATATGTGTCTGCGATAAGAGTGTGGTGGCGGGGCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAGCGTCGGTAAGTGTATGGTGTGTCCCCACAGAGGGGTTAGAAGTGACTCCTCCCATCCACCACAAGTGAATACATCTCGGTATATAAGGATTCGATTCTGAAGTTAACACCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAAGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAGGAATCACGAAGCCAGCTATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCTGGACTCATCTACGAGGAGACTCGCGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACTGCCATGGACGTCGTCTATGCTTTGAAGCGTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACGATGTGGCTTCTTGAC</pcr_primer_p1>
		<pcr_primer_p2>GGGGACACACCATACACTTA</pcr_primer_p2>
		<pcr_amplicon_size>278</pcr_amplicon_size>
		<canonical_amplicon>TAACGATGTGGCTTCTTGACTCCTCCGGCAGCTGGGGCCGATTTGCGGGCAGCCTTGGTGGCCAACTGCTTTCTTGAGCCTTTCCTCCGGTCGATTTGCGGGCGGTTTGCTTGGTACGAGCCATTTCAATTGGAATCCGATTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGTGGTGGCGGGGCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAGCGTCGGTAAGTGTATGGTGTGTCCCC</canonical_amplicon>
		<polymorphic_amplicon>TAACGATGTGGCTTCTTGACTCCTCCGGCAGCTGGGGCCGATTTGCGGGCAGCCTTGGTGGCCAACTGCTTTCTTGAGCCTTTCCTCCGGTCGATTTGCGGGCGGTTTGCTTGGTACGAGCCATTTCAATTGGAATCCGATTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTTWTATATGTGTCTGCGATAAGAGTGTGGTGGCGGGGCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAGCGTCGGTAAGTGTATGGTGTGTCCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23520</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1440843</contig_pos>
        <strand>-</strand>
        <context>GATAAGAGTG[A/G]GGWGGCSGSG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGAAAAGAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTG</left_flank>
        <right_flank>GGTGGCGGGGCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTAGTAAGAATTTAAGCACGCTCTCCTCGGATACGTCTGGCCAATTGGATGTCCTTTGGCATGATGGTGACTCGCTTGGCGTGGATGGCGCACAAGTTGGTGTCCTCGAAAAGTCCGACGAGGTAAGCCTCAGCGGACTCTTGAAGAGCCATGACAGCGGAAGATTGGAAGCGAAGGTCAGTCTTGAAATCCTGGGCGATCTCACGAACAAGACGCTGGAATGGCAGCTTGCGGATAAGGAGCTCAGTGGACTTCTGGTAACGTCTGATCTCACGAAGAGCGACGGTTCCTGGGCGGTAACGATGTGGCTTCTTGACTCCTCCGGCAGCTGGGGCCGATTTGCGGGCAGCCTTGGTGGCCAACTGCTTTCTTGAGCCTTTCCTCCGGTCGATTTGCGGGCGGTTTGCTTGGTACGAGCCATTTCAATTGGAATCCGATTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGTGGTGGCGGGGCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAGCGTCGGTAAGTGTATGGTGTGTCCCCACAGAGGGGTTAGAAGTGACTCCTCCCATCCACCACAAGTGAATACATCTCGGTATATAAGGATTCGATTCTGAAGTTAACACCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAAGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAGGAATCACGAAGCCAGCTATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCTGGACTCATCTACGAGGAGACTCGCGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACTGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGA</canonical>
            <polymorphic>ATTAGTAAGAATTTAAGCACGCTCTCCTCGGATACGTCTGGCCAATTGGATGTCCTTTGGCATGATGGTGACTCGCTTGGCGTGGATGGCGCACAAGTTGGTGTCCTCGAAAAGTCCGACGAGGTAAGCCTCAGCGGACTCTTGAAGAGCCATGACAGCGGAAGATTGGAAGCGAAGGTCAGTCTTGAAATCCTGGGCGATCTCACGAACAAGACGCTGGAATGGCAGCTTGCGGATAAGGAGCTCAGTGGACTTCTGGTAACGTCTGATCTCACGAAGAGCGACGGTTCCTGGGCGGTAACGATGTGGCTTCTTGACTCCTCCGGCAGCTGGGGCCGATTTGCGGGCAGCCTTGGTGGCCAACTGCTTTCTTGAGCCTTTCCTCCGGTCGATTTGCGGGCGGTTTGCTTGGTACGAGCCATTTCAATTGGAATCCGATTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGRGGTGGCGGGGCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAGCGTCGGTAAGTGTATGGTGTGTCCCCACAGAGGGGTTAGAAGTGACTCCTCCCATCCACCACAAGTGAATACATCTCGGTATATAAGGATTCGATTCTGAAGTTAACACCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAAGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAGGAATCACGAAGCCAGCTATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCTGGACTCATCTACGAGGAGACTCGCGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACTGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>102 92 91 60 59 58 51 50 45 41 36 35 34 24 22 20 19 17 17 15 14 14 13 10 9 9 8 7 6 6 6 3 3 2 2</canonical_bands>
                <polymorphic_bands>102 92 91 60 59 58 51 50 45 41 36 35 34 24 22 20 19 17 17 15 14 14 13 10 9 9 8 7 6 6 6 5 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGGACTGTGAAGAAAAGA</pcr_primer_p1>
		<pcr_primer_p2>CGATTGATGAAGACTCACAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGTGGTGGCGGGGCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAGCGTCGGTAAGTGTATGGTGTGTCCCCACAGAGGGGTTAGAAGTGACTCCTCCCATCCACCACAAGTGAATACATCTCGGTATATAAGGATTCGATTCTGAAGTTAACACCATCTCACTTGTGAGTCTTCATCAATCG</canonical_amplicon>
		<polymorphic_amplicon>TTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGRGGTGGCGGGGCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAGCGTCGGTAAGTGTATGGTGTGTCCCCACAGAGGGGTTAGAAGTGACTCCTCCCATCCACCACAAGTGAATACATCTCGGTATATAAGGATTCGATTCTGAAGTTAACACCATCTCACTTGTGAGTCTTCATCAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23521</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1440846</contig_pos>
        <strand>-</strand>
        <context>AAGAGTGRGG[A/T]GGCSGSGCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAGAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGTGG</left_flank>
        <right_flank>GGCGGGGCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAGCGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTAAGAATTTAAGCACGCTCTCCTCGGATACGTCTGGCCAATTGGATGTCCTTTGGCATGATGGTGACTCGCTTGGCGTGGATGGCGCACAAGTTGGTGTCCTCGAAAAGTCCGACGAGGTAAGCCTCAGCGGACTCTTGAAGAGCCATGACAGCGGAAGATTGGAAGCGAAGGTCAGTCTTGAAATCCTGGGCGATCTCACGAACAAGACGCTGGAATGGCAGCTTGCGGATAAGGAGCTCAGTGGACTTCTGGTAACGTCTGATCTCACGAAGAGCGACGGTTCCTGGGCGGTAACGATGTGGCTTCTTGACTCCTCCGGCAGCTGGGGCCGATTTGCGGGCAGCCTTGGTGGCCAACTGCTTTCTTGAGCCTTTCCTCCGGTCGATTTGCGGGCGGTTTGCTTGGTACGAGCCATTTCAATTGGAATCCGATTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGTGGTGGCGGGGCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAGCGTCGGTAAGTGTATGGTGTGTCCCCACAGAGGGGTTAGAAGTGACTCCTCCCATCCACCACAAGTGAATACATCTCGGTATATAAGGATTCGATTCTGAAGTTAACACCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAAGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAGGAATCACGAAGCCAGCTATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCTGGACTCATCTACGAGGAGACTCGCGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACTGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGAGGA</canonical>
            <polymorphic>AGTAAGAATTTAAGCACGCTCTCCTCGGATACGTCTGGCCAATTGGATGTCCTTTGGCATGATGGTGACTCGCTTGGCGTGGATGGCGCACAAGTTGGTGTCCTCGAAAAGTCCGACGAGGTAAGCCTCAGCGGACTCTTGAAGAGCCATGACAGCGGAAGATTGGAAGCGAAGGTCAGTCTTGAAATCCTGGGCGATCTCACGAACAAGACGCTGGAATGGCAGCTTGCGGATAAGGAGCTCAGTGGACTTCTGGTAACGTCTGATCTCACGAAGAGCGACGGTTCCTGGGCGGTAACGATGTGGCTTCTTGACTCCTCCGGCAGCTGGGGCCGATTTGCGGGCAGCCTTGGTGGCCAACTGCTTTCTTGAGCCTTTCCTCCGGTCGATTTGCGGGCGGTTTGCTTGGTACGAGCCATTTCAATTGGAATCCGATTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGTGGWGGCGGGGCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAGCGTCGGTAAGTGTATGGTGTGTCCCCACAGAGGGGTTAGAAGTGACTCCTCCCATCCACCACAAGTGAATACATCTCGGTATATAAGGATTCGATTCTGAAGTTAACACCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAAGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAGGAATCACGAAGCCAGCTATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCTGGACTCATCTACGAGGAGACTCGCGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACTGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>102 92 91 62 60 58 51 50 45 41 36 35 34 24 22 20 17 17 16 15 14 14 13 10 9 9 8 7 6 6 6 3 3 2 2</canonical_bands>
                <polymorphic_bands>102 92 91 62 61 60 51 50 45 41 36 35 34 24 22 20 17 17 16 15 14 14 13 10 9 9 8 7 6 6 6 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGGACTGTGAAGAAAAGA</pcr_primer_p1>
		<pcr_primer_p2>CGATTGATGAAGACTCACAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGTGGTGGCGGGGCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAGCGTCGGTAAGTGTATGGTGTGTCCCCACAGAGGGGTTAGAAGTGACTCCTCCCATCCACCACAAGTGAATACATCTCGGTATATAAGGATTCGATTCTGAAGTTAACACCATCTCACTTGTGAGTCTTCATCAATCG</canonical_amplicon>
		<polymorphic_amplicon>TTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGTGGWGGCGGGGCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAGCGTCGGTAAGTGTATGGTGTGTCCCCACAGAGGGGTTAGAAGTGACTCCTCCCATCCACCACAAGTGAATACATCTCGGTATATAAGGATTCGATTCTGAAGTTAACACCATCTCACTTGTGAGTCTTCATCAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23522</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1440850</contig_pos>
        <strand>-</strand>
        <context>GTGRGGWGGC[C/G]GSGCGGAGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGTGGTGGC</left_flank>
        <right_flank>GGGCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAGCGTCGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAATTTAAGCACGCTCTCCTCGGATACGTCTGGCCAATTGGATGTCCTTTGGCATGATGGTGACTCGCTTGGCGTGGATGGCGCACAAGTTGGTGTCCTCGAAAAGTCCGACGAGGTAAGCCTCAGCGGACTCTTGAAGAGCCATGACAGCGGAAGATTGGAAGCGAAGGTCAGTCTTGAAATCCTGGGCGATCTCACGAACAAGACGCTGGAATGGCAGCTTGCGGATAAGGAGCTCAGTGGACTTCTGGTAACGTCTGATCTCACGAAGAGCGACGGTTCCTGGGCGGTAACGATGTGGCTTCTTGACTCCTCCGGCAGCTGGGGCCGATTTGCGGGCAGCCTTGGTGGCCAACTGCTTTCTTGAGCCTTTCCTCCGGTCGATTTGCGGGCGGTTTGCTTGGTACGAGCCATTTCAATTGGAATCCGATTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGTGGTGGCGGGGCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAGCGTCGGTAAGTGTATGGTGTGTCCCCACAGAGGGGTTAGAAGTGACTCCTCCCATCCACCACAAGTGAATACATCTCGGTATATAAGGATTCGATTCTGAAGTTAACACCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAAGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAGGAATCACGAAGCCAGCTATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCTGGACTCATCTACGAGGAGACTCGCGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACTGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGAGGATAAT</canonical>
            <polymorphic>AGAATTTAAGCACGCTCTCCTCGGATACGTCTGGCCAATTGGATGTCCTTTGGCATGATGGTGACTCGCTTGGCGTGGATGGCGCACAAGTTGGTGTCCTCGAAAAGTCCGACGAGGTAAGCCTCAGCGGACTCTTGAAGAGCCATGACAGCGGAAGATTGGAAGCGAAGGTCAGTCTTGAAATCCTGGGCGATCTCACGAACAAGACGCTGGAATGGCAGCTTGCGGATAAGGAGCTCAGTGGACTTCTGGTAACGTCTGATCTCACGAAGAGCGACGGTTCCTGGGCGGTAACGATGTGGCTTCTTGACTCCTCCGGCAGCTGGGGCCGATTTGCGGGCAGCCTTGGTGGCCAACTGCTTTCTTGAGCCTTTCCTCCGGTCGATTTGCGGGCGGTTTGCTTGGTACGAGCCATTTCAATTGGAATCCGATTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGTGGTGGCSGGGCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAGCGTCGGTAAGTGTATGGTGTGTCCCCACAGAGGGGTTAGAAGTGACTCCTCCCATCCACCACAAGTGAATACATCTCGGTATATAAGGATTCGATTCTGAAGTTAACACCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAAGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAGGAATCACGAAGCCAGCTATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCTGGACTCATCTACGAGGAGACTCGCGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACTGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGAGGATAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>498 287 105 105 5</canonical_bands>
                <polymorphic_bands>498 287 110 105</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGGACTGTGAAGAAAAGA</pcr_primer_p1>
		<pcr_primer_p2>CGATTGATGAAGACTCACAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGTGGTGGCGGGGCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAGCGTCGGTAAGTGTATGGTGTGTCCCCACAGAGGGGTTAGAAGTGACTCCTCCCATCCACCACAAGTGAATACATCTCGGTATATAAGGATTCGATTCTGAAGTTAACACCATCTCACTTGTGAGTCTTCATCAATCG</canonical_amplicon>
		<polymorphic_amplicon>TTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGTGGTGGCSGGGCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAGCGTCGGTAAGTGTATGGTGTGTCCCCACAGAGGGGTTAGAAGTGACTCCTCCCATCCACCACAAGTGAATACATCTCGGTATATAAGGATTCGATTCTGAAGTTAACACCATCTCACTTGTGAGTCTTCATCAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23523</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1440852</contig_pos>
        <strand>-</strand>
        <context>GRGGWGGCSG[C/G]GCGGAGTCTA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGTGGTGGCGG</left_flank>
        <right_flank>GCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAGCGTCGGTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTAAGCACGCTCTCCTCGGATACGTCTGGCCAATTGGATGTCCTTTGGCATGATGGTGACTCGCTTGGCGTGGATGGCGCACAAGTTGGTGTCCTCGAAAAGTCCGACGAGGTAAGCCTCAGCGGACTCTTGAAGAGCCATGACAGCGGAAGATTGGAAGCGAAGGTCAGTCTTGAAATCCTGGGCGATCTCACGAACAAGACGCTGGAATGGCAGCTTGCGGATAAGGAGCTCAGTGGACTTCTGGTAACGTCTGATCTCACGAAGAGCGACGGTTCCTGGGCGGTAACGATGTGGCTTCTTGACTCCTCCGGCAGCTGGGGCCGATTTGCGGGCAGCCTTGGTGGCCAACTGCTTTCTTGAGCCTTTCCTCCGGTCGATTTGCGGGCGGTTTGCTTGGTACGAGCCATTTCAATTGGAATCCGATTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGTGGTGGCGGGGCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAGCGTCGGTAAGTGTATGGTGTGTCCCCACAGAGGGGTTAGAAGTGACTCCTCCCATCCACCACAAGTGAATACATCTCGGTATATAAGGATTCGATTCTGAAGTTAACACCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAAGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAGGAATCACGAAGCCAGCTATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCTGGACTCATCTACGAGGAGACTCGCGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACTGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGAGGATAATTT</canonical>
            <polymorphic>AATTTAAGCACGCTCTCCTCGGATACGTCTGGCCAATTGGATGTCCTTTGGCATGATGGTGACTCGCTTGGCGTGGATGGCGCACAAGTTGGTGTCCTCGAAAAGTCCGACGAGGTAAGCCTCAGCGGACTCTTGAAGAGCCATGACAGCGGAAGATTGGAAGCGAAGGTCAGTCTTGAAATCCTGGGCGATCTCACGAACAAGACGCTGGAATGGCAGCTTGCGGATAAGGAGCTCAGTGGACTTCTGGTAACGTCTGATCTCACGAAGAGCGACGGTTCCTGGGCGGTAACGATGTGGCTTCTTGACTCCTCCGGCAGCTGGGGCCGATTTGCGGGCAGCCTTGGTGGCCAACTGCTTTCTTGAGCCTTTCCTCCGGTCGATTTGCGGGCGGTTTGCTTGGTACGAGCCATTTCAATTGGAATCCGATTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGTGGTGGCGGSGCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAGCGTCGGTAAGTGTATGGTGTGTCCCCACAGAGGGGTTAGAAGTGACTCCTCCCATCCACCACAAGTGAATACATCTCGGTATATAAGGATTCGATTCTGAAGTTAACACCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAAGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAGGAATCACGAAGCCAGCTATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCTGGACTCATCTACGAGGAGACTCGCGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACTGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGAGGATAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>500 285 105 105 5</canonical_bands>
                <polymorphic_bands>505 285 105 105</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGGACTGTGAAGAAAAGA</pcr_primer_p1>
		<pcr_primer_p2>CGATTGATGAAGACTCACAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGTGGTGGCGGGGCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAGCGTCGGTAAGTGTATGGTGTGTCCCCACAGAGGGGTTAGAAGTGACTCCTCCCATCCACCACAAGTGAATACATCTCGGTATATAAGGATTCGATTCTGAAGTTAACACCATCTCACTTGTGAGTCTTCATCAATCG</canonical_amplicon>
		<polymorphic_amplicon>TTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGTGGTGGCGGSGCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAGCGTCGGTAAGTGTATGGTGTGTCCCCACAGAGGGGTTAGAAGTGACTCCTCCCATCCACCACAAGTGAATACATCTCGGTATATAAGGATTCGATTCTGAAGTTAACACCATCTCACTTGTGAGTCTTCATCAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23524</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1440875</contig_pos>
        <strand>-</strand>
        <context>GAGAAGAGAA[C/T]YGGGGAACAT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGTCTGCGATAAGAGTGTGGTGGCGGGGCGGAGTCTATGGAGAAGAGAA</left_flank>
        <right_flank>AGGGGAACATTCGGAGAGCGTCGGTAAGTGTATGGTGTGTCCCCACAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACGTCTGGCCAATTGGATGTCCTTTGGCATGATGGTGACTCGCTTGGCGTGGATGGCGCACAAGTTGGTGTCCTCGAAAAGTCCGACGAGGTAAGCCTCAGCGGACTCTTGAAGAGCCATGACAGCGGAAGATTGGAAGCGAAGGTCAGTCTTGAAATCCTGGGCGATCTCACGAACAAGACGCTGGAATGGCAGCTTGCGGATAAGGAGCTCAGTGGACTTCTGGTAACGTCTGATCTCACGAAGAGCGACGGTTCCTGGGCGGTAACGATGTGGCTTCTTGACTCCTCCGGCAGCTGGGGCCGATTTGCGGGCAGCCTTGGTGGCCAACTGCTTTCTTGAGCCTTTCCTCCGGTCGATTTGCGGGCGGTTTGCTTGGTACGAGCCATTTCAATTGGAATCCGATTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGTGGTGGCGGGGCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAGCGTCGGTAAGTGTATGGTGTGTCCCCACAGAGGGGTTAGAAGTGACTCCTCCCATCCACCACAAGTGAATACATCTCGGTATATAAGGATTCGATTCTGAAGTTAACACCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAAGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAGGAATCACGAAGCCAGCTATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCTGGACTCATCTACGAGGAGACTCGCGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACTGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGAGGATAATTTTATTACCTTTCTGATTCATGCAA</canonical>
            <polymorphic>TACGTCTGGCCAATTGGATGTCCTTTGGCATGATGGTGACTCGCTTGGCGTGGATGGCGCACAAGTTGGTGTCCTCGAAAAGTCCGACGAGGTAAGCCTCAGCGGACTCTTGAAGAGCCATGACAGCGGAAGATTGGAAGCGAAGGTCAGTCTTGAAATCCTGGGCGATCTCACGAACAAGACGCTGGAATGGCAGCTTGCGGATAAGGAGCTCAGTGGACTTCTGGTAACGTCTGATCTCACGAAGAGCGACGGTTCCTGGGCGGTAACGATGTGGCTTCTTGACTCCTCCGGCAGCTGGGGCCGATTTGCGGGCAGCCTTGGTGGCCAACTGCTTTCTTGAGCCTTTCCTCCGGTCGATTTGCGGGCGGTTTGCTTGGTACGAGCCATTTCAATTGGAATCCGATTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGTGGTGGCGGGGCGGAGTCTATGGAGAAGAGAAYAGGGGAACATTCGGAGAGCGTCGGTAAGTGTATGGTGTGTCCCCACAGAGGGGTTAGAAGTGACTCCTCCCATCCACCACAAGTGAATACATCTCGGTATATAAGGATTCGATTCTGAAGTTAACACCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAAGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAGGAATCACGAAGCCAGCTATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCTGGACTCATCTACGAGGAGACTCGCGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACTGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGAGGATAATTTTATTACCTTTCTGATTCATGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGGACTGTGAAGAAAAGA</pcr_primer_p1>
		<pcr_primer_p2>CGATTGATGAAGACTCACAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGTGGTGGCGGGGCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAGCGTCGGTAAGTGTATGGTGTGTCCCCACAGAGGGGTTAGAAGTGACTCCTCCCATCCACCACAAGTGAATACATCTCGGTATATAAGGATTCGATTCTGAAGTTAACACCATCTCACTTGTGAGTCTTCATCAATCG</canonical_amplicon>
		<polymorphic_amplicon>TTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGTGGTGGCGGGGCGGAGTCTATGGAGAAGAGAAYAGGGGAACATTCGGAGAGCGTCGGTAAGTGTATGGTGTGTCCCCACAGAGGGGTTAGAAGTGACTCCTCCCATCCACCACAAGTGAATACATCTCGGTATATAAGGATTCGATTCTGAAGTTAACACCATCTCACTTGTGAGTCTTCATCAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23525</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1440876</contig_pos>
        <strand>-</strand>
        <context>AGAAGAGAAY[C/T]GGGGAACATT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTCTGCGATAAGAGTGTGGTGGCGGGGCGGAGTCTATGGAGAAGAGAAA</left_flank>
        <right_flank>GGGGAACATTCGGAGAGCGTCGGTAAGTGTATGGTGTGTCCCCACAGAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGTCTGGCCAATTGGATGTCCTTTGGCATGATGGTGACTCGCTTGGCGTGGATGGCGCACAAGTTGGTGTCCTCGAAAAGTCCGACGAGGTAAGCCTCAGCGGACTCTTGAAGAGCCATGACAGCGGAAGATTGGAAGCGAAGGTCAGTCTTGAAATCCTGGGCGATCTCACGAACAAGACGCTGGAATGGCAGCTTGCGGATAAGGAGCTCAGTGGACTTCTGGTAACGTCTGATCTCACGAAGAGCGACGGTTCCTGGGCGGTAACGATGTGGCTTCTTGACTCCTCCGGCAGCTGGGGCCGATTTGCGGGCAGCCTTGGTGGCCAACTGCTTTCTTGAGCCTTTCCTCCGGTCGATTTGCGGGCGGTTTGCTTGGTACGAGCCATTTCAATTGGAATCCGATTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGTGGTGGCGGGGCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAGCGTCGGTAAGTGTATGGTGTGTCCCCACAGAGGGGTTAGAAGTGACTCCTCCCATCCACCACAAGTGAATACATCTCGGTATATAAGGATTCGATTCTGAAGTTAACACCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAAGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAGGAATCACGAAGCCAGCTATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCTGGACTCATCTACGAGGAGACTCGCGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACTGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGAGGATAATTTTATTACCTTTCTGATTCATGCAAC</canonical>
            <polymorphic>ACGTCTGGCCAATTGGATGTCCTTTGGCATGATGGTGACTCGCTTGGCGTGGATGGCGCACAAGTTGGTGTCCTCGAAAAGTCCGACGAGGTAAGCCTCAGCGGACTCTTGAAGAGCCATGACAGCGGAAGATTGGAAGCGAAGGTCAGTCTTGAAATCCTGGGCGATCTCACGAACAAGACGCTGGAATGGCAGCTTGCGGATAAGGAGCTCAGTGGACTTCTGGTAACGTCTGATCTCACGAAGAGCGACGGTTCCTGGGCGGTAACGATGTGGCTTCTTGACTCCTCCGGCAGCTGGGGCCGATTTGCGGGCAGCCTTGGTGGCCAACTGCTTTCTTGAGCCTTTCCTCCGGTCGATTTGCGGGCGGTTTGCTTGGTACGAGCCATTTCAATTGGAATCCGATTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGTGGTGGCGGGGCGGAGTCTATGGAGAAGAGAAAYGGGGAACATTCGGAGAGCGTCGGTAAGTGTATGGTGTGTCCCCACAGAGGGGTTAGAAGTGACTCCTCCCATCCACCACAAGTGAATACATCTCGGTATATAAGGATTCGATTCTGAAGTTAACACCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAAGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAGGAATCACGAAGCCAGCTATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCTGGACTCATCTACGAGGAGACTCGCGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACTGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGAGGATAATTTTATTACCTTTCTGATTCATGCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGGACTGTGAAGAAAAGA</pcr_primer_p1>
		<pcr_primer_p2>CGATTGATGAAGACTCACAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGTGGTGGCGGGGCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAGCGTCGGTAAGTGTATGGTGTGTCCCCACAGAGGGGTTAGAAGTGACTCCTCCCATCCACCACAAGTGAATACATCTCGGTATATAAGGATTCGATTCTGAAGTTAACACCATCTCACTTGTGAGTCTTCATCAATCG</canonical_amplicon>
		<polymorphic_amplicon>TTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGTGGTGGCGGGGCGGAGTCTATGGAGAAGAGAAAYGGGGAACATTCGGAGAGCGTCGGTAAGTGTATGGTGTGTCCCCACAGAGGGGTTAGAAGTGACTCCTCCCATCCACCACAAGTGAATACATCTCGGTATATAAGGATTCGATTCTGAAGTTAACACCATCTCACTTGTGAGTCTTCATCAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23526</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1440898</contig_pos>
        <strand>-</strand>
        <context>GGAGAGCGTC[A/C]GTAAGTGTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCGGGGCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAGCGTC</left_flank>
        <right_flank>GTAAGTGTATGGTGTGTCCCCACAGAGGGGTTAGAAGTGACTCCTCCCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGGCATGATGGTGACTCGCTTGGCGTGGATGGCGCACAAGTTGGTGTCCTCGAAAAGTCCGACGAGGTAAGCCTCAGCGGACTCTTGAAGAGCCATGACAGCGGAAGATTGGAAGCGAAGGTCAGTCTTGAAATCCTGGGCGATCTCACGAACAAGACGCTGGAATGGCAGCTTGCGGATAAGGAGCTCAGTGGACTTCTGGTAACGTCTGATCTCACGAAGAGCGACGGTTCCTGGGCGGTAACGATGTGGCTTCTTGACTCCTCCGGCAGCTGGGGCCGATTTGCGGGCAGCCTTGGTGGCCAACTGCTTTCTTGAGCCTTTCCTCCGGTCGATTTGCGGGCGGTTTGCTTGGTACGAGCCATTTCAATTGGAATCCGATTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGTGGTGGCGGGGCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAGCGTCGGTAAGTGTATGGTGTGTCCCCACAGAGGGGTTAGAAGTGACTCCTCCCATCCACCACAAGTGAATACATCTCGGTATATAAGGATTCGATTCTGAAGTTAACACCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAAGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAGGAATCACGAAGCCAGCTATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCTGGACTCATCTACGAGGAGACTCGCGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACTGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGAGGATAATTTTATTACCTTTCTGATTCATGCAACCAAACTTAACCGAACCCAACGG</canonical>
            <polymorphic>TTTGGCATGATGGTGACTCGCTTGGCGTGGATGGCGCACAAGTTGGTGTCCTCGAAAAGTCCGACGAGGTAAGCCTCAGCGGACTCTTGAAGAGCCATGACAGCGGAAGATTGGAAGCGAAGGTCAGTCTTGAAATCCTGGGCGATCTCACGAACAAGACGCTGGAATGGCAGCTTGCGGATAAGGAGCTCAGTGGACTTCTGGTAACGTCTGATCTCACGAAGAGCGACGGTTCCTGGGCGGTAACGATGTGGCTTCTTGACTCCTCCGGCAGCTGGGGCCGATTTGCGGGCAGCCTTGGTGGCCAACTGCTTTCTTGAGCCTTTCCTCCGGTCGATTTGCGGGCGGTTTGCTTGGTACGAGCCATTTCAATTGGAATCCGATTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGTGGTGGCGGGGCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAGCGTCMGTAAGTGTATGGTGTGTCCCCACAGAGGGGTTAGAAGTGACTCCTCCCATCCACCACAAGTGAATACATCTCGGTATATAAGGATTCGATTCTGAAGTTAACACCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAAGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAGGAATCACGAAGCCAGCTATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCTGGACTCATCTACGAGGAGACTCGCGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACTGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGAGGATAATTTTATTACCTTTCTGATTCATGCAACCAAACTTAACCGAACCCAACGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>401 269 165 99 66</canonical_bands>
                <polymorphic_bands>670 165 99 66</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGGACTGTGAAGAAAAGA</pcr_primer_p1>
		<pcr_primer_p2>CGATTGATGAAGACTCACAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGTGGTGGCGGGGCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAGCGTCGGTAAGTGTATGGTGTGTCCCCACAGAGGGGTTAGAAGTGACTCCTCCCATCCACCACAAGTGAATACATCTCGGTATATAAGGATTCGATTCTGAAGTTAACACCATCTCACTTGTGAGTCTTCATCAATCG</canonical_amplicon>
		<polymorphic_amplicon>TTGGGACTGTGAAGAAAAGAAGGGGAAGAGACGGTTTTTATATGTGTCTGCGATAAGAGTGTGGTGGCGGGGCGGAGTCTATGGAGAAGAGAAAAGGGGAACATTCGGAGAGCGTCMGTAAGTGTATGGTGTGTCCCCACAGAGGGGTTAGAAGTGACTCCTCCCATCCACCACAAGTGAATACATCTCGGTATATAAGGATTCGATTCTGAAGTTAACACCATCTCACTTGTGAGTCTTCATCAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23527</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1452429</contig_pos>
        <strand>+</strand>
        <context>AACAGAAGAG[C/G]CCTCTCTAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATGGATTAAAATTTGAAAAATTTGGAAAAAATGGCTGGAAAACAGAAGAG</left_flank>
        <right_flank>CCTCTCTAATTGAAGGCCCCTGTAAAAGCAAGGCCTTCCGCAGAAACCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTAGAATCTAGAATTCAGTATGATTTCTGACCATGTTTACTTTACTATTGTATTCTTCTTCCATGATCATTGTTCTCGTATCGAAGTTTTCTTCTTTTCTTTTTGTTTTTGTACGAATTCGTTTTCAAAGTTTCCAAAAAAAAACATAATACGCTTGATGTCACCTTCAAGAAGAATACTATTTTTCCGACAATACCGTAACCAACTACCGTAGAACCTGTATTAGAAGGGCCTCGTTGATTGGAGAGCCCCTGTAATAGAAGGGCACTGCGAGAGCGGTTTGGAAAAATATAAGATCCCCTTTAAAATATGTTGTCTGAAACTAAGCATTTCCCTGCGTTTTCAGCGAAAAATAGTCAAAATAACTTCAAAATTTCACAGAAAATTTGTTGAAACACTCTCTTTTGCTTAAAACCTGGCTCAATTTTGATGAAATCGTCAGATTTTAATGGATTAAAATTTGAAAAATTTGGAAAAAATGGCTGGAAAACAGAAGAGCCCTCTCTAATTGAAGGCCCCTGTAAAAGCAAGGCCTTCCGCAGAAACCTTGGTATAATAGAAGAGCTGGTTCTCCTATTTTACGGCTCTTTTTACGGCTCTTTTTACGTTCCCCCCTCCATCTGAATATCTCCTTCTTCTCTACCCTTATCTTTTTCTCAATTTCACTTTTCACTTCTACGATCACAACCTCCTCAGAAAAAAAATCGAACCTATTACTGATGATTACGTGAAAAGATGGGTTTCCTTGACTCTCGTATACTCTCGTATACCTCCTTTCTTTTTGCGCACTTCTTCCCAATATCCCCCATCATCTTTTGCCTTTTCTCTGCTGTCCCCATGGTATGTACAGTCTGTCGCAAGGCACTGTCCAAGAGATTCCAAGACGCAGGTGTCCGAAGGAATTCCTGGCCGGGCCGAGAGAGTATTGAGAATGGTGGAGACCCAGAGACATCTAAAGTCTTCCCTCTCTCTTTGTCTTATTCTCTTCTTCTTACCTTA</canonical>
            <polymorphic>TCTAGAATCTAGAATTCAGTATGATTTCTGACCATGTTTACTTTACTATTGTATTCTTCTTCCATGATCATTGTTCTCGTATCGAAGTTTTCTTCTTTTCTTTTTGTTTTTGTACGAATTCGTTTTCAAAGTTTCCAAAAAAAAACATAATACGCTTGATGTCACCTTCAAGAAGAATACTATTTTTCCGACAATACCGTAACCAACTACCGTAGAACCTGTATTAGAAGGGCCTCGTTGATTGGAGAGCCCCTGTAATAGAAGGGCACTGCGAGAGCGGTTTGGAAAAATATAAGATCCCCTTTAAAATATGTTGTCTGAAACTAAGCATTTCCCTGCGTTTTCAGCGAAAAATAGTCAAAATAACTTCAAAATTTCACAGAAAATTTGTTGAAACACTCTCTTTTGCTTAAAACCTGGCTCAATTTTGATGAAATCGTCAGATTTTAATGGATTAAAATTTGAAAAATTTGGAAAAAATGGCTGGAAAACAGAAGAGSCCTCTCTAATTGAAGGCCCCTGTAAAAGCAAGGCCTTCCGCAGAAACCTTGGTATAATAGAAGAGCTGGTTCTCCTATTTTACGGCTCTTTTTACGGCTCTTTTTACGTTCCCCCCTCCATCTGAATATCTCCTTCTTCTCTACCCTTATCTTTTTCTCAATTTCACTTTTCACTTCTACGATCACAACCTCCTCAGAAAAAAAATCGAACCTATTACTGATGATTACGTGAAAAGATGGGTTTCCTTGACTCTCGTATACTCTCGTATACCTCCTTTCTTTTTGCGCACTTCTTCCCAATATCCCCCATCATCTTTTGCCTTTTCTCTGCTGTCCCCATGGTATGTACAGTCTGTCGCAAGGCACTGTCCAAGAGATTCCAAGACGCAGGTGTCCGAAGGAATTCCTGGCCGGGCCGAGAGAGTATTGAGAATGGTGGAGACCCAGAGACATCTAAAGTCTTCCCTCTCTCTTTGTCTTATTCTCTTCTTCTTACCTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>499 251 250</canonical_bands>
                <polymorphic_bands>749 251</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>499 251 233 17</canonical_bands>
                <polymorphic_bands>732 251 17</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>313 232 171 85 63 32 20 17 17 17 16 12 5</canonical_bands>
                <polymorphic_bands>313 232 171 85 63 33 32 20 17 17 12 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATGAAATCGTCAGATTTTAATG</pcr_primer_p1>
		<pcr_primer_p2>GAAGTGAAAAGTGAAATTGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATGAAATCGTCAGATTTTAATGGATTAAAATTTGAAAAATTTGGAAAAAATGGCTGGAAAACAGAAGAGCCCTCTCTAATTGAAGGCCCCTGTAAAAGCAAGGCCTTCCGCAGAAACCTTGGTATAATAGAAGAGCTGGTTCTCCTATTTTACGGCTCTTTTTACGGCTCTTTTTACGTTCCCCCCTCCATCTGAATATCTCCTTCTTCTCTACCCTTATCTTTTTCTCAATTTCACTTTTCACTTC</canonical_amplicon>
		<polymorphic_amplicon>GATGAAATCGTCAGATTTTAATGGATTAAAATTTGAAAAATTTGGAAAAAATGGCTGGAAAACAGAAGAGSCCTCTCTAATTGAAGGCCCCTGTAAAAGCAAGGCCTTCCGCAGAAACCTTGGTATAATAGAAGAGCTGGTTCTCCTATTTTACGGCTCTTTTTACGGCTCTTTTTACGTTCCCCCCTCCATCTGAATATCTCCTTCTTCTCTACCCTTATCTTTTTCTCAATTTCACTTTTCACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23528</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1460669</contig_pos>
        <strand>+</strand>
        <context>TCTTTTTTTG[C/G]TCCATTTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTCACTCTTGTTTCCATACTTGCTCACTTTTGTACAATTCTCTTTTTTTG</left_flank>
        <right_flank>TCCATTTTCTCCTCCCACAAAAAACCTTGCCATAATGGTGAATTGCCTCT</right_flank>
        <qual_score>130</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGAACAACACAATGGGTGAGAAAAGAGTTTCTGAATTGAAAAATCTTATTTCCCAGGTTTCAGCAATTTGATTCTTCCACCGCCTCCACCATATCAACAGCCTCAACAACTGGTCAATTAGAGAGATAGAATAATTAGAATTAAAGCAACAACAAAAAATTCGACAAAAAAGTTCAAGACATCCTCATTCATCATCATCATTTTCAACACGTGGTTCTGCAATTCTCAGTGATTCTTTTTGACACTTTTATACATCTGTTTTGTTTTCTTTTCTCAGCTTTTCAATTTATATAGTTCGTATAGAAGACTTGCCCCCTGAATTCCTTCTCTTCACACGCATATTATTTGTTCGGGTTGAGAAGATTCTGACTCTCCTGTTTGAATAATACGCTGTTCTTCCAAACACGTCTTTTGCTCAATTCCCCCACACGAAAAACCATGCTCAATGTCACTCTTGTTTCCATACTTGCTCACTTTTGTACAATTCTCTTTTTTTGGTCCATTTTCTCCTCCCACAAAAAACCTTGCCATAATGGTGAATTGCCTCTTCTCTCCCCATAGTTTTTGGTCCTATTTTTTGTGCGTGCTCGTTTTAATTCATATCTTTGCTACCCCCTCCCATCCCTCCCATAGACATTTTTCATATGTTCCAAAACCTTCCAATCACCTTTTCCATGTTTTTTTCTGTGTGTGCGAGTCATAATCAACAACGAAACCTCATAAATTTTTGACGATCGAATCACATTTTTACTTTTTTTGTTTTTTAGAAATGTCACAAAGTGATCAGGTACAACTTTGAAACGAGTAGTGATTTTATACGGTCACATGACACTCAGAAATGCTTGGAATAGATTTTTCGAAGTTTTCGAGTTTCAAAATTTCAGAATTTTGAACCATTTCGTGCATCTTGAAGATAACCCATGACTCAGGACCCAGAACTTCAATTTTTTTTTCGAATATCCCTGATGACTTTCTCCACAATCCAAAAATTCATAAAA</canonical>
            <polymorphic>ATAGAACAACACAATGGGTGAGAAAAGAGTTTCTGAATTGAAAAATCTTATTTCCCAGGTTTCAGCAATTTGATTCTTCCACCGCCTCCACCATATCAACAGCCTCAACAACTGGTCAATTAGAGAGATAGAATAATTAGAATTAAAGCAACAACAAAAAATTCGACAAAAAAGTTCAAGACATCCTCATTCATCATCATCATTTTCAACACGTGGTTCTGCAATTCTCAGTGATTCTTTTTGACACTTTTATACATCTGTTTTGTTTTCTTTTCTCAGCTTTTCAATTTATATAGTTCGTATAGAAGACTTGCCCCCTGAATTCCTTCTCTTCACACGCATATTATTTGTTCGGGTTGAGAAGATTCTGACTCTCCTGTTTGAATAATACGCTGTTCTTCCAAACACGTCTTTTGCTCAATTCCCCCACACGAAAAACCATGCTCAATGTCACTCTTGTTTCCATACTTGCTCACTTTTGTACAATTCTCTTTTTTTGSTCCATTTTCTCCTCCCACAAAAAACCTTGCCATAATGGTGAATTGCCTCTTCTCTCCCCATAGTTTTTGGTCCTATTTTTTGTGCGTGCTCGTTTTAATTCATATCTTTGCTACCCCCTCCCATCCCTCCCATAGACATTTTTCATATGTTCCAAAACCTTCCAATCACCTTTTCCATGTTTTTTTCTGTGTGTGCGAGTCATAATCAACAACGAAACCTCATAAATTTTTGACGATCGAATCACATTTTTACTTTTTTTGTTTTTTAGAAATGTCACAAAGTGATCAGGTACAACTTTGAAACGAGTAGTGATTTTATACGGTCACATGACACTCAGAAATGCTTGGAATAGATTTTTCGAAGTTTTCGAGTTTCAAAATTTCAGAATTTTGAACCATTTCGTGCATCTTGAAGATAACCCATGACTCAGGACCCAGAACTTCAATTTTTTTTTCGAATATCCCTGATGACTTTCTCCACAATCCAAAAATTCATAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>499 362 70 69</canonical_bands>
                <polymorphic_bands>569 362 69</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>499 362 70 69</canonical_bands>
                <polymorphic_bands>569 362 69</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTGACTCTCCTGTTTGAATAA</pcr_primer_p1>
		<pcr_primer_p2>GGGTAGCAAAGATATGAATTAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCTGACTCTCCTGTTTGAATAATACGCTGTTCTTCCAAACACGTCTTTTGCTCAATTCCCCCACACGAAAAACCATGCTCAATGTCACTCTTGTTTCCATACTTGCTCACTTTTGTACAATTCTCTTTTTTTGGTCCATTTTCTCCTCCCACAAAAAACCTTGCCATAATGGTGAATTGCCTCTTCTCTCCCCATAGTTTTTGGTCCTATTTTTTGTGCGTGCTCGTTTTAATTCATATCTTTGCTACCC</canonical_amplicon>
		<polymorphic_amplicon>TTCTGACTCTCCTGTTTGAATAATACGCTGTTCTTCCAAACACGTCTTTTGCTCAATTCCCCCACACGAAAAACCATGCTCAATGTCACTCTTGTTTCCATACTTGCTCACTTTTGTACAATTCTCTTTTTTTGSTCCATTTTCTCCTCCCACAAAAAACCTTGCCATAATGGTGAATTGCCTCTTCTCTCCCCATAGTTTTTGGTCCTATTTTTTGTGCGTGCTCGTTTTAATTCATATCTTTGCTACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23529</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1463502</contig_pos>
        <strand></strand>
        <context>aaatcagctt[G/A]aacttgacag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGGTTGACAGAATTTTGATATCTTGCTTGTGAGTCAAGATAAATCAGCTT</left_flank>
        <right_flank>AACTTGACAGTGTGGGGCCCTTCTATTACAGGTTGGATTTCAAATGCTTT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAATGGAAAGTAAGAAGTTGATGATGAGTGGAAACGATGATGATGTGGAGAAAAGAAAAGGATATATTTTAGTGGGGGCAACTGGGAGTCTGCACGTCTTCTTTTCGAGTTCCCTTAGGGAAGATTCGAACAGTTGGAAGTGGTGCAAAAAAAGAGATTTATTAGGTGTTGAGAAGAAGAGGTCCATTCGAAAATAACAAGGCCCTTCTTTGGTTTGATTAAACTTGAAGTTTTCCAAGAATTTTTGAAAAAGTTCGAAATTCTCCAATCACCAAGCAGTAGTACAGTATAAGAAGAAAGGGTAAAAAATAGTGAATTTGCAAAAAACATCAAACCTGTAAAAGAGAGGCCCTCTAACCTTGAGCCAGTTTATCTCGGTACCTGTCAAAGATATAAAATAGTTGTCCACTAATAAATTGTTTATCATAATATCAAAAACATTTTATCGGTTGACAGAATTTTGATATCTTGCTTGTGAGTCAAGATAAATCAGCTTGAACTTGACAGTGTGGGGCCCTTCTATTACAGGTTGGATTTCAAATGCTTTCTGAGTGAAATACAAAATGCCAAATTGTCATTAATGTTCTTAAACCACCCCCACGAAATTCAAATCTGTTCTCCAAATCTCGGTTTTTGATAGACAGCTTGGGAGGCGAAATTTCCCAATTTTTGACACATTTTGTCTCCGGAAGACGTACACAAGGCATATGGTCAGTTGGACGAAAAGAAAGACGAGACAATGATGAAATATTGAAATTTCCTCTTTATTTTTATGGAAATTGAAACGCAGAGAGGATTGTAGAAAAAGAAAACAAAAAAAGAGTACCTCACGGTATTTCAAACCAATGGGTCGAAAATCGCGCCTCAGCGAACGTGAAAAATCACTGCGCAACGTGTCCAATTTTCTTTGGCTGAAGATCAAACTTTTAAACGTTGGGCGAAAAAATCGCGAGTTGCAATGCGTTGATTAAAAATATTTAGGTCAACTCCCCGCCAA</canonical>
            <polymorphic>CAAAAATGGAAAGTAAGAAGTTGATGATGAGTGGAAACGATGATGATGTGGAGAAAAGAAAAGGATATATTTTAGTGGGGGCAACTGGGAGTCTGCACGTCTTCTTTTCGAGTTCCCTTAGGGAAGATTCGAACAGTTGGAAGTGGTGCAAAAAAAGAGATTTATTAGGTGTTGAGAAGAAGAGGTCCATTCGAAAATAACAAGGCCCTTCTTTGGTTTGATTAAACTTGAAGTTTTCCAAGAATTTTTGAAAAAGTTCGAAATTCTCCAATCACCAAGCAGTAGTACAGTATAAGAAGAAAGGGTAAAAAATAGTGAATTTGCAAAAAACATCAAACCTGTAAAAGAGAGGCCCTCTAACCTTGAGCCAGTTTATCTCGGTACCTGTCAAAGATATAAAATAGTTGTCCACTAATAAATTGTTTATCATAATATCAAAAACATTTTATCGGTTGACAGAATTTTGATATCTTGCTTGTGAGTCAAGATAAATCAGCTTRAACTTGACAGTGTGGGGCCCTTCTATTACAGGTTGGATTTCAAATGCTTTCTGAGTGAAATACAAAATGCCAAATTGTCATTAATGTTCTTAAACCACCCCCACGAAATTCAAATCTGTTCTCCAAATCTCGGTTTTTGATAGACAGCTTGGGAGGCGAAATTTCCCAATTTTTGACACATTTTGTCTCCGGAAGACGTACACAAGGCATATGGTCAGTTGGACGAAAAGAAAGACGAGACAATGATGAAATATTGAAATTTCCTCTTTATTTTTATGGAAATTGAAACGCAGAGAGGATTGTAGAAAAAGAAAACAAAAAAAGAGTACCTCACGGTATTTCAAACCAATGGGTCGAAAATCGCGCCTCAGCGAACGTGAAAAATCACTGCGCAACGTGTCCAATTTTCTTTGGCTGAAGATCAAACTTTTAAACGTTGGGCGAAAAAATCGCGAGTTGCAATGCGTTGATTAAAAATATTTAGGTCAACTCCCCGCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGTATAAGAAGAAAGGGTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GCATTTTGTATTTCACTCAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>ACAGTATAAGAAGAAAGGGTAAAAAATAGTGAATTTGCAAAAAACATCAAACCTGTAAAAGAGAGGCCCTCTAACCTTGAGCCAGTTTATCTCGGTACCTGTCAAAGATATAAAATAGTTGTCCACTAATAAATTGTTTATCATAATATCAAAAACATTTTATCGGTTGACAGAATTTTGATATCTTGCTTGTGAGTCAAGATAAATCAGCTTGAACTTGACAGTGTGGGGCCCTTCTATTACAGGTTGGATTTCAAATGCTTTCTGAGTGAAATACAAAATGC</canonical_amplicon>
		<polymorphic_amplicon>ACAGTATAAGAAGAAAGGGTAAAAAATAGTGAATTTGCAAAAAACATCAAACCTGTAAAAGAGAGGCCCTCTAACCTTGAGCCAGTTTATCTCGGTACCTGTCAAAGATATAAAATAGTTGTCCACTAATAAATTGTTTATCATAATATCAAAAACATTTTATCGGTTGACAGAATTTTGATATCTTGCTTGTGAGTCAAGATAAATCAGCTTRAACTTGACAGTGTGGGGCCCTTCTATTACAGGTTGGATTTCAAATGCTTTCTGAGTGAAATACAAAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23530</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1463525</contig_pos>
        <strand></strand>
        <context>tggggccctt[C/T]tattacaggt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCTTGTGAGTCAAGATAAATCAGCTTGAACTTGACAGTGTGGGGCCCTT</left_flank>
        <right_flank>TATTACAGGTTGGATTTCAAATGCTTTCTGAGTGAAATACAAAATGCCAA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGATGAGTGGAAACGATGATGATGTGGAGAAAAGAAAAGGATATATTTTAGTGGGGGCAACTGGGAGTCTGCACGTCTTCTTTTCGAGTTCCCTTAGGGAAGATTCGAACAGTTGGAAGTGGTGCAAAAAAAGAGATTTATTAGGTGTTGAGAAGAAGAGGTCCATTCGAAAATAACAAGGCCCTTCTTTGGTTTGATTAAACTTGAAGTTTTCCAAGAATTTTTGAAAAAGTTCGAAATTCTCCAATCACCAAGCAGTAGTACAGTATAAGAAGAAAGGGTAAAAAATAGTGAATTTGCAAAAAACATCAAACCTGTAAAAGAGAGGCCCTCTAACCTTGAGCCAGTTTATCTCGGTACCTGTCAAAGATATAAAATAGTTGTCCACTAATAAATTGTTTATCATAATATCAAAAACATTTTATCGGTTGACAGAATTTTGATATCTTGCTTGTGAGTCAAGATAAATCAGCTTGAACTTGACAGTGTGGGGCCCTTCTATTACAGGTTGGATTTCAAATGCTTTCTGAGTGAAATACAAAATGCCAAATTGTCATTAATGTTCTTAAACCACCCCCACGAAATTCAAATCTGTTCTCCAAATCTCGGTTTTTGATAGACAGCTTGGGAGGCGAAATTTCCCAATTTTTGACACATTTTGTCTCCGGAAGACGTACACAAGGCATATGGTCAGTTGGACGAAAAGAAAGACGAGACAATGATGAAATATTGAAATTTCCTCTTTATTTTTATGGAAATTGAAACGCAGAGAGGATTGTAGAAAAAGAAAACAAAAAAAGAGTACCTCACGGTATTTCAAACCAATGGGTCGAAAATCGCGCCTCAGCGAACGTGAAAAATCACTGCGCAACGTGTCCAATTTTCTTTGGCTGAAGATCAAACTTTTAAACGTTGGGCGAAAAAATCGCGAGTTGCAATGCGTTGATTAAAAATATTTAGGTCAACTCCCCGCCAACTTTTAAATTATCAAACTCCCCC</canonical>
            <polymorphic>ATGATGAGTGGAAACGATGATGATGTGGAGAAAAGAAAAGGATATATTTTAGTGGGGGCAACTGGGAGTCTGCACGTCTTCTTTTCGAGTTCCCTTAGGGAAGATTCGAACAGTTGGAAGTGGTGCAAAAAAAGAGATTTATTAGGTGTTGAGAAGAAGAGGTCCATTCGAAAATAACAAGGCCCTTCTTTGGTTTGATTAAACTTGAAGTTTTCCAAGAATTTTTGAAAAAGTTCGAAATTCTCCAATCACCAAGCAGTAGTACAGTATAAGAAGAAAGGGTAAAAAATAGTGAATTTGCAAAAAACATCAAACCTGTAAAAGAGAGGCCCTCTAACCTTGAGCCAGTTTATCTCGGTACCTGTCAAAGATATAAAATAGTTGTCCACTAATAAATTGTTTATCATAATATCAAAAACATTTTATCGGTTGACAGAATTTTGATATCTTGCTTGTGAGTCAAGATAAATCAGCTTGAACTTGACAGTGTGGGGCCCTTYTATTACAGGTTGGATTTCAAATGCTTTCTGAGTGAAATACAAAATGCCAAATTGTCATTAATGTTCTTAAACCACCCCCACGAAATTCAAATCTGTTCTCCAAATCTCGGTTTTTGATAGACAGCTTGGGAGGCGAAATTTCCCAATTTTTGACACATTTTGTCTCCGGAAGACGTACACAAGGCATATGGTCAGTTGGACGAAAAGAAAGACGAGACAATGATGAAATATTGAAATTTCCTCTTTATTTTTATGGAAATTGAAACGCAGAGAGGATTGTAGAAAAAGAAAACAAAAAAAGAGTACCTCACGGTATTTCAAACCAATGGGTCGAAAATCGCGCCTCAGCGAACGTGAAAAATCACTGCGCAACGTGTCCAATTTTCTTTGGCTGAAGATCAAACTTTTAAACGTTGGGCGAAAAAATCGCGAGTTGCAATGCGTTGATTAAAAATATTTAGGTCAACTCCCCGCCAACTTTTAAATTATCAAACTCCCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGTATAAGAAGAAAGGGTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATTTGGCATTTTGTATTTCAC</pcr_primer_p2>
		<pcr_amplicon_size>290</pcr_amplicon_size>
		<canonical_amplicon>ACAGTATAAGAAGAAAGGGTAAAAAATAGTGAATTTGCAAAAAACATCAAACCTGTAAAAGAGAGGCCCTCTAACCTTGAGCCAGTTTATCTCGGTACCTGTCAAAGATATAAAATAGTTGTCCACTAATAAATTGTTTATCATAATATCAAAAACATTTTATCGGTTGACAGAATTTTGATATCTTGCTTGTGAGTCAAGATAAATCAGCTTGAACTTGACAGTGTGGGGCCCTTCTATTACAGGTTGGATTTCAAATGCTTTCTGAGTGAAATACAAAATGCCAAATT</canonical_amplicon>
		<polymorphic_amplicon>ACAGTATAAGAAGAAAGGGTAAAAAATAGTGAATTTGCAAAAAACATCAAACCTGTAAAAGAGAGGCCCTCTAACCTTGAGCCAGTTTATCTCGGTACCTGTCAAAGATATAAAATAGTTGTCCACTAATAAATTGTTTATCATAATATCAAAAACATTTTATCGGTTGACAGAATTTTGATATCTTGCTTGTGAGTCAAGATAAATCAGCTTGAACTTGACAGTGTGGGGCCCTTYTATTACAGGTTGGATTTCAAATGCTTTCTGAGTGAAATACAAAATGCCAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23531</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1463913</contig_pos>
        <strand></strand>
        <context>ccaattttct[T/C]tggctgaaga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCGCGCCTCAGCGAACGTGAAAAATCACTGCGCAACGTGTCCAATTTTCT</left_flank>
        <right_flank>TGGCTGAAGATCAAACTTTTAAACGTTGGGCGAAAAAATCGCGAGTTGCA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAATAAATTGTTTATCATAATATCAAAAACATTTTATCGGTTGACAGAATTTTGATATCTTGCTTGTGAGTCAAGATAAATCAGCTTGAACTTGACAGTGTGGGGCCCTTCTATTACAGGTTGGATTTCAAATGCTTTCTGAGTGAAATACAAAATGCCAAATTGTCATTAATGTTCTTAAACCACCCCCACGAAATTCAAATCTGTTCTCCAAATCTCGGTTTTTGATAGACAGCTTGGGAGGCGAAATTTCCCAATTTTTGACACATTTTGTCTCCGGAAGACGTACACAAGGCATATGGTCAGTTGGACGAAAAGAAAGACGAGACAATGATGAAATATTGAAATTTCCTCTTTATTTTTATGGAAATTGAAACGCAGAGAGGATTGTAGAAAAAGAAAACAAAAAAAGAGTACCTCACGGTATTTCAAACCAATGGGTCGAAAATCGCGCCTCAGCGAACGTGAAAAATCACTGCGCAACGTGTCCAATTTTCTTTGGCTGAAGATCAAACTTTTAAACGTTGGGCGAAAAAATCGCGAGTTGCAATGCGTTGATTAAAAATATTTAGGTCAACTCCCCGCCAACTTTTAAATTATCAAACTCCCCCTCGCCTCAAAGTCATCTCGTGCGCGATTTTCGACCCGTTGGTTTGAAATACCGTGAGTACTTGAATTATTTTCTCACGGACTGGAAATTGAGATGAATGTTAGTGCTCAAAGAGCAGATTTAGAAAAGAAAGAGATGACGTTGAAAATACTATTTGAGATAATTCGAAATTTGGCAAGGTTACAAAGAAGTTCCCAGACTGAGAAACTAAGGGTGTCGATTTTTGTTTCTTTTAGAGACATCAGCTGATCCTTTAAGTTTGCGAACTTTGTGAGAAAAGTGCCTCTTCGAATTAAAGTTTTCGTTTCCTCTATCCGTTTTTTTCCAATATCCAAAACACCGCGTCCATTCAGCTGTCAGTTTTCATTGACATGCTCGGATAGAGGTCA</canonical>
            <polymorphic>CTAATAAATTGTTTATCATAATATCAAAAACATTTTATCGGTTGACAGAATTTTGATATCTTGCTTGTGAGTCAAGATAAATCAGCTTGAACTTGACAGTGTGGGGCCCTTCTATTACAGGTTGGATTTCAAATGCTTTCTGAGTGAAATACAAAATGCCAAATTGTCATTAATGTTCTTAAACCACCCCCACGAAATTCAAATCTGTTCTCCAAATCTCGGTTTTTGATAGACAGCTTGGGAGGCGAAATTTCCCAATTTTTGACACATTTTGTCTCCGGAAGACGTACACAAGGCATATGGTCAGTTGGACGAAAAGAAAGACGAGACAATGATGAAATATTGAAATTTCCTCTTTATTTTTATGGAAATTGAAACGCAGAGAGGATTGTAGAAAAAGAAAACAAAAAAAGAGTACCTCACGGTATTTCAAACCAATGGGTCGAAAATCGCGCCTCAGCGAACGTGAAAAATCACTGCGCAACGTGTCCAATTTTCTYTGGCTGAAGATCAAACTTTTAAACGTTGGGCGAAAAAATCGCGAGTTGCAATGCGTTGATTAAAAATATTTAGGTCAACTCCCCGCCAACTTTTAAATTATCAAACTCCCCCTCGCCTCAAAGTCATCTCGTGCGCGATTTTCGACCCGTTGGTTTGAAATACCGTGAGTACTTGAATTATTTTCTCACGGACTGGAAATTGAGATGAATGTTAGTGCTCAAAGAGCAGATTTAGAAAAGAAAGAGATGACGTTGAAAATACTATTTGAGATAATTCGAAATTTGGCAAGGTTACAAAGAAGTTCCCAGACTGAGAAACTAAGGGTGTCGATTTTTGTTTCTTTTAGAGACATCAGCTGATCCTTTAAGTTTGCGAACTTTGTGAGAAAAGTGCCTCTTCGAATTAAAGTTTTCGTTTCCTCTATCCGTTTTTTTCCAATATCCAAAACACCGCGTCCATTCAGCTGTCAGTTTTCATTGACATGCTCGGATAGAGGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTGTAGAAAAAGAAAACAAA</pcr_primer_p1>
		<pcr_primer_p2>TCCGTGAGAAAATAATTCAAGT</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>GGATTGTAGAAAAAGAAAACAAAAAAAGAGTACCTCACGGTATTTCAAACCAATGGGTCGAAAATCGCGCCTCAGCGAACGTGAAAAATCACTGCGCAACGTGTCCAATTTTCTTTGGCTGAAGATCAAACTTTTAAACGTTGGGCGAAAAAATCGCGAGTTGCAATGCGTTGATTAAAAATATTTAGGTCAACTCCCCGCCAACTTTTAAATTATCAAACTCCCCCTCGCCTCAAAGTCATCTCGTGCGCGATTTTCGACCCGTTGGTTTGAAATACCGTGAGTACTTGAATTATTTTCTCACGGA</canonical_amplicon>
		<polymorphic_amplicon>GGATTGTAGAAAAAGAAAACAAAAAAAGAGTACCTCACGGTATTTCAAACCAATGGGTCGAAAATCGCGCCTCAGCGAACGTGAAAAATCACTGCGCAACGTGTCCAATTTTCTYTGGCTGAAGATCAAACTTTTAAACGTTGGGCGAAAAAATCGCGAGTTGCAATGCGTTGATTAAAAATATTTAGGTCAACTCCCCGCCAACTTTTAAATTATCAAACTCCCCCTCGCCTCAAAGTCATCTCGTGCGCGATTTTCGACCCGTTGGTTTGAAATACCGTGAGTACTTGAATTATTTTCTCACGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23532</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1492483</contig_pos>
        <strand></strand>
        <context>gcgtttttaa[G/A]tcaatttttc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GCTGGGGCGCGTTTTCCGATCAGGCTGTTTGAAATAGCGTGCGTTTTTAA</left_flank>
        <right_flank>TCAATTTTTCCTTTATCAAAAAATTTCGTTTAAAAAATTTTTTGGGTAAA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAACAAAACATATGATGGATGAACGAAGAAAAGTGATGGTTACAAATCAGAGAGAGAAAAATGAGATGGGGCAGGCAGAGGTGTGAAAAGTTAGTTTAGCGGATTAGCGAGTTTGACACTTTTCACACTGTTATTATTCTGGTACAAAAAATCGGAGCTGTGGAAGAAAAACGCCGGTAAAAGGTCCAACAACGACAACTACCGTAACCTAAAAATATGTTTATTTTCAGGATTTACGTTCTCACGGTGTTTCAAACCAACGGGTCGAAAACCGCGCCCCAGATAACTTTTAGGCCAGGCGAAATTTAATAATTCAAATGTTGACGTGGATTTGACCTATATATTTTTAATCAACGTATTGTAACTCGCAATTTTTTCGCCCAACGTTTAAAAGTTTGATCCTCAGCCAGCGAAAATTTGACACGTTGAGCAGTGATTTCTCACGTTCGCTGGGGCGCGTTTTCCGATCAGGCTGTTTGAAATAGCGTGCGTTTTTAAGTCAATTTTTCCTTTATCAAAAAATTTCGTTTAAAAAATTTTTTGGGTAAAAACCCATAATTCAACGAAAAGCGGTGAAGCACGAGAAATCAAACACGGGAAATAAAAACATTTATAGGTTACGGTAGTTGTCGCTGTGGGGCCTTCGGCCATGGCCACCGGCGTTTCTCTTCCACAGCTCAAAGATTACGGAGTTGGATCAAAGATTACGGAGTTTGATCGGAGCTGGATCAAAGATTACGGAGTTTCGCTTTTCCGCCTTTAAGAAAAGTTTAACGAATTAATGGAGCTAGAATTTTTAGTTCTGACCTTTCGCTGAAAAATAAAACACTTCAGTTGCTTAGAAAATTCAAAGTATAAGTTTTCAAAGGAACTATTGAGATAAATTATTTTTCGCCAAACCACAAAATGTTTGGAAGATGCCAAAATGACAGAAATGAGATGTTCGTCAACTGGGCTCCTCACTCTTTGCGGAATAACTTCTTTCACTCATCACAAGTC</canonical>
            <polymorphic>CAAACAAAACATATGATGGATGAACGAAGAAAAGTGATGGTTACAAATCAGAGAGAGAAAAATGAGATGGGGCAGGCAGAGGTGTGAAAAGTTAGTTTAGCGGATTAGCGAGTTTGACACTTTTCACACTGTTATTATTCTGGTACAAAAAATCGGAGCTGTGGAAGAAAAACGCCGGTAAAAGGTCCAACAACGACAACTACCGTAACCTAAAAATATGTTTATTTTCAGGATTTACGTTCTCACGGTGTTTCAAACCAACGGGTCGAAAACCGCGCCCCAGATAACTTTTAGGCCAGGCGAAATTTAATAATTCAAATGTTGACGTGGATTTGACCTATATATTTTTAATCAACGTATTGTAACTCGCAATTTTTTCGCCCAACGTTTAAAAGTTTGATCCTCAGCCAGCGAAAATTTGACACGTTGAGCAGTGATTTCTCACGTTCGCTGGGGCGCGTTTTCCGATCAGGCTGTTTGAAATAGCGTGCGTTTTTAARTCAATTTTTCCTTTATCAAAAAATTTCGTTTAAAAAATTTTTTGGGTAAAAACCCATAATTCAACGAAAAGCGGTGAAGCACGAGAAATCAAACACGGGAAATAAAAACATTTATAGGTTACGGTAGTTGTCGCTGTGGGGCCTTCGGCCATGGCCACCGGCGTTTCTCTTCCACAGCTCAAAGATTACGGAGTTGGATCAAAGATTACGGAGTTTGATCGGAGCTGGATCAAAGATTACGGAGTTTCGCTTTTCCGCCTTTAAGAAAAGTTTAACGAATTAATGGAGCTAGAATTTTTAGTTCTGACCTTTCGCTGAAAAATAAAACACTTCAGTTGCTTAGAAAATTCAAAGTATAAGTTTTCAAAGGAACTATTGAGATAAATTATTTTTCGCCAAACCACAAAATGTTTGGAAGATGCCAAAATGACAGAAATGAGATGTTCGTCAACTGGGCTCCTCACTCTTTGCGGAATAACTTCTTTCACTCATCACAAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTTGACACTTTTCACACTGTT</pcr_primer_p1>
		<pcr_primer_p2>TGATCCAACTCCGTAATCTTT</pcr_primer_p2>
		<pcr_amplicon_size>591</pcr_amplicon_size>
		<canonical_amplicon>AGTTTGACACTTTTCACACTGTTATTATTCTGGTACAAAAAATCGGAGCTGTGGAAGAAAAACGCCGGTAAAAGGTCCAACAACGACAACTACCGTAACCTAAAAATATGTTTATTTTCAGGATTTACGTTCTCACGGTGTTTCAAACCAACGGGTCGAAAACCGCGCCCCAGATAACTTTTAGGCCAGGCGAAATTTAATAATTCAAATGTTGACGTGGATTTGACCTATATATTTTTAATCAACGTATTGTAACTCGCAATTTTTTCGCCCAACGTTTAAAAGTTTGATCCTCAGCCAGCGAAAATTTGACACGTTGAGCAGTGATTTCTCACGTTCGCTGGGGCGCGTTTTCCGATCAGGCTGTTTGAAATAGCGTGCGTTTTTAAGTCAATTTTTCCTTTATCAAAAAATTTCGTTTAAAAAATTTTTTGGGTAAAAACCCATAATTCAACGAAAAGCGGTGAAGCACGAGAAATCAAACACGGGAAATAAAAACATTTATAGGTTACGGTAGTTGTCGCTGTGGGGCCTTCGGCCATGGCCACCGGCGTTTCTCTTCCACAGCTCAAAGATTACGGAGTTGGATCA</canonical_amplicon>
		<polymorphic_amplicon>AGTTTGACACTTTTCACACTGTTATTATTCTGGTACAAAAAATCGGAGCTGTGGAAGAAAAACGCCGGTAAAAGGTCCAACAACGACAACTACCGTAACCTAAAAATATGTTTATTTTCAGGATTTACGTTCTCACGGTGTTTCAAACCAACGGGTCGAAAACCGCGCCCCAGATAACTTTTAGGCCAGGCGAAATTTAATAATTCAAATGTTGACGTGGATTTGACCTATATATTTTTAATCAACGTATTGTAACTCGCAATTTTTTCGCCCAACGTTTAAAAGTTTGATCCTCAGCCAGCGAAAATTTGACACGTTGAGCAGTGATTTCTCACGTTCGCTGGGGCGCGTTTTCCGATCAGGCTGTTTGAAATAGCGTGCGTTTTTAARTCAATTTTTCCTTTATCAAAAAATTTCGTTTAAAAAATTTTTTGGGTAAAAACCCATAATTCAACGAAAAGCGGTGAAGCACGAGAAATCAAACACGGGAAATAAAAACATTTATAGGTTACGGTAGTTGTCGCTGTGGGGCCTTCGGCCATGGCCACCGGCGTTTCTCTTCCACAGCTCAAAGATTACGGAGTTGGATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23533</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1496231</contig_pos>
        <strand>+</strand>
        <context>TTTCCAAATT[A/C]TATTTCCACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGAGCTCATATAGCCTCATATATTGTGACCTGGGCTCCTGTTTCCAAATT</left_flank>
        <right_flank>TATTTCCACATTTTTCATCTTTATTTCGTTGTTATCGTATCATTGGGTTT</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAAGTACATTTTATCAGTTGACGAGTTTTCGATATCTATTGAAGAAACCGAGATAATTGAGCTTAAAGAGCACGCATAGGGTGAGATCCTATTACGGTACTCAAACTTTTTTGTTATGCAATCGGAAACATTATCTTTGTATGAATGCTTTCTGAGAGACTACAATTGGTTTCCGTCCTTCTTGTCTAATATATTTTTCACTTTACCTCAATTCTTCCATTTTCTATTCACCATCTCTCTCCCACCCATATATTTTTGTTGTTATTTTTCATCAGTTCTCATAAAAATATAACTGAACTCTCGTCATTTCATTTTTCTCCCAGTTCTCTTTGTGCTTAGTGACTAACAAAAACTAAACAGATGTTTGGCGAAACGAGTCCGAATTTCACACTGTTTGCTCAATTGATTTTTATATGCCTGGCGTGTGTATGTGCTCGGCAGGCAACGGAGCTCATATAGCCTCATATATTGTGACCTGGGCTCCTGTTTCCAAATTATATTTCCACATTTTTCATCTTTATTTCGTTGTTATCGTATCATTGGGTTTTTATCGTTGGGAAAAACTACAAAATTAGGGTGCACCGGTTACTGTGCCGTGAGAGAATTCTCGGAAAATCGGGTTGGGGAGAATTCAAGTTAACGTGACGACTACTTTTGAGAAAGCAGGCTAATTTTAGGAATGTGCAAAAATAGTACAAAGTTAGTCAGGTGAGTTATGCAGAGTAAAGGGGAATTATTAGGTTTGATCAAATTATTAGGTTTGATTCCTATTTAGTTGGAAATCCAGAGGATGATGATTCCGATGAGGAGAACGACGATAATGGCGATAATGATCATCATCTGAATAGACATATGTTGGTAGTTGTGAATTAGGTGCACCCTCTCTTTTTTGAAAGTTAGTTTTGAGGATCAATCCGAAATTCATTAAAAAACAAACTTACACGAGCATTCTGCCACCAGTACTTCTGACGAAGAGTGCGAGATGACTGCTGGAACT</canonical>
            <polymorphic>TTTCAAGTACATTTTATCAGTTGACGAGTTTTCGATATCTATTGAAGAAACCGAGATAATTGAGCTTAAAGAGCACGCATAGGGTGAGATCCTATTACGGTACTCAAACTTTTTTGTTATGCAATCGGAAACATTATCTTTGTATGAATGCTTTCTGAGAGACTACAATTGGTTTCCGTCCTTCTTGTCTAATATATTTTTCACTTTACCTCAATTCTTCCATTTTCTATTCACCATCTCTCTCCCACCCATATATTTTTGTTGTTATTTTTCATCAGTTCTCATAAAAATATAACTGAACTCTCGTCATTTCATTTTTCTCCCAGTTCTCTTTGTGCTTAGTGACTAACAAAAACTAAACAGATGTTTGGCGAAACGAGTCCGAATTTCACACTGTTTGCTCAATTGATTTTTATATGCCTGGCGTGTGTATGTGCTCGGCAGGCAACGGAGCTCATATAGCCTCATATATTGTGACCTGGGCTCCTGTTTCCAAATTMTATTTCCACATTTTTCATCTTTATTTCGTTGTTATCGTATCATTGGGTTTTTATCGTTGGGAAAAACTACAAAATTAGGGTGCACCGGTTACTGTGCCGTGAGAGAATTCTCGGAAAATCGGGTTGGGGAGAATTCAAGTTAACGTGACGACTACTTTTGAGAAAGCAGGCTAATTTTAGGAATGTGCAAAAATAGTACAAAGTTAGTCAGGTGAGTTATGCAGAGTAAAGGGGAATTATTAGGTTTGATCAAATTATTAGGTTTGATTCCTATTTAGTTGGAAATCCAGAGGATGATGATTCCGATGAGGAGAACGACGATAATGGCGATAATGATCATCATCTGAATAGACATATGTTGGTAGTTGTGAATTAGGTGCACCCTCTCTTTTTTGAAAGTTAGTTTTGAGGATCAATCCGAAATTCATTAAAAAACAAACTTACACGAGCATTCTGCCACCAGTACTTCTGACGAAGAGTGCGAGATGACTGCTGGAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTCTCTTTGTGCTTAGTGAC</pcr_primer_p1>
		<pcr_primer_p2>GTAGTTTTTCCCAACGATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAGTTCTCTTTGTGCTTAGTGACTAACAAAAACTAAACAGATGTTTGGCGAAACGAGTCCGAATTTCACACTGTTTGCTCAATTGATTTTTATATGCCTGGCGTGTGTATGTGCTCGGCAGGCAACGGAGCTCATATAGCCTCATATATTGTGACCTGGGCTCCTGTTTCCAAATTATATTTCCACATTTTTCATCTTTATTTCGTTGTTATCGTATCATTGGGTTTTTATCGTTGGGAAAAACTAC</canonical_amplicon>
		<polymorphic_amplicon>CAGTTCTCTTTGTGCTTAGTGACTAACAAAAACTAAACAGATGTTTGGCGAAACGAGTCCGAATTTCACACTGTTTGCTCAATTGATTTTTATATGCCTGGCGTGTGTATGTGCTCGGCAGGCAACGGAGCTCATATAGCCTCATATATTGTGACCTGGGCTCCTGTTTCCAAATTMTATTTCCACATTTTTCATCTTTATTTCGTTGTTATCGTATCATTGGGTTTTTATCGTTGGGAAAAACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23534</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1535858</contig_pos>
        <strand></strand>
        <context>ttgtaacttt[G/T]tttttgaaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAAATTTTCGAAAATTTTCATGTATAGGGGTTCATGAATTGTAACTTT</left_flank>
        <right_flank>TTTTTGAAAAAATTGAAATAAGTCTCGTAACTCAAGGACTCGACCTATAT</right_flank>
        <qual_score>50</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACCATGGAGTTTCAGGAAATTGATTTTTGCATAATTTGTACTAATACTGAAGGGTTTGTCGAGATCAGTTCAGGGATGAGGCAAAGATTAGTCAAAAAAAAGCAACATATCTCGGTTCCTGATAATTATATCAAAAAGTTGTCAACTGATAAATTATTTATCATGATATTACAAACCTTTTACCAGTTGATTTTTGATATCTCGCATAGGAGCCAATTTTTGAAAAAAAACGTATTCGGGGGACCATGTCTATCAGTTTTCTCAGGGCGAGTAACGTACATATACGCGTTTAAATATAGGTCTGACCCTTCAGTTATGAGACTTATTTTAATTTTTTTCAAAAGAAGTTACAATTGATGAACCCTATACATGNNNNNNNNNNAATGAAAATGAAGAGAAACAACAAAAGAGAGTTCAGAATCTGGAAAGGGAAGCAATCGAAAGTTTAAAAAATTTTCGAAAATTTTCATGTATAGGGGTTCATGAATTGTAACTTTGTTTTTGAAAAAATTGAAATAAGTCTCGTAACTCAAGGACTCGACCTATATTTGAACGTTACTCGTCCTGAGAAAGCTGATAGACATGATCCCCCGAATACGTTTTTTCAAAAATTGGCATTTATTGATTTCTGTGGAACTCTAAGTTTTCATATTTTCTATTTTCCTGACTTTCCTATTGATAATGGAGCATAGGTGCAATTGAGATAAATGCTTGTCAGTTTATCACCTTTTAAATAAAAAAGTTTGACTGTCTGCCATGAAAATGAACAAATTTATGGTTTCCCGAAGGGTACCGACTCCGAACTCACGAAAAATCATAAATTGCCTCGCCATTTGAATAGACCTTCACGACGGCAGCTATAATTCTGGGGTTGTTCTAGCTAGACTGTGTACCACTATCTAGCATAGGTTTCATCTGAATCCCCGGGTAACATATGGAGGGTTCCCTTGTGAGTAAAATTTACTATGAACATTGGTGTCGCAATTTTCGCACACAAA</canonical>
            <polymorphic>GAACCATGGAGTTTCAGGAAATTGATTTTTGCATAATTTGTACTAATACTGAAGGGTTTGTCGAGATCAGTTCAGGGATGAGGCAAAGATTAGTCAAAAAAAAGCAACATATCTCGGTTCCTGATAATTATATCAAAAAGTTGTCAACTGATAAATTATTTATCATGATATTACAAACCTTTTACCAGTTGATTTTTGATATCTCGCATAGGAGCCAATTTTTGAAAAAAAACGTATTCGGGGGACCATGTCTATCAGTTTTCTCAGGGCGAGTAACGTACATATACGCGTTTAAATATAGGTCTGACCCTTCAGTTATGAGACTTATTTTAATTTTTTTCAAAAGAAGTTACAATTGATGAACCCTATACATGNNNNNNNNNNAATGAAAATGAAGAGAAACAACAAAAGAGAGTTCAGAATCTGGAAAGGGAAGCAATCGAAAGTTTAAAAAATTTTCGAAAATTTTCATGTATAGGGGTTCATGAATTGTAACTTTKTTTTTGAAAAAATTGAAATAAGTCTCGTAACTCAAGGACTCGACCTATATTTGAACGTTACTCGTCCTGAGAAAGCTGATAGACATGATCCCCCGAATACGTTTTTTCAAAAATTGGCATTTATTGATTTCTGTGGAACTCTAAGTTTTCATATTTTCTATTTTCCTGACTTTCCTATTGATAATGGAGCATAGGTGCAATTGAGATAAATGCTTGTCAGTTTATCACCTTTTAAATAAAAAAGTTTGACTGTCTGCCATGAAAATGAACAAATTTATGGTTTCCCGAAGGGTACCGACTCCGAACTCACGAAAAATCATAAATTGCCTCGCCATTTGAATAGACCTTCACGACGGCAGCTATAATTCTGGGGTTGTTCTAGCTAGACTGTGTACCACTATCTAGCATAGGTTTCATCTGAATCCCCGGGTAACATATGGAGGGTTCCCTTGTGAGTAAAATTTACTATGAACATTGGTGTCGCAATTTTCGCACACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAGGCAAAGATTAGTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>CGACACCAATGTTCATAGTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>906</pcr_amplicon_size>
		<canonical_amplicon>ATGAGGCAAAGATTAGTCAAAAAAAAGCAACATATCTCGGTTCCTGATAATTATATCAAAAAGTTGTCAACTGATAAATTATTTATCATGATATTACAAACCTTTTACCAGTTGATTTTTGATATCTCGCATAGGAGCCAATTTTTGAAAAAAAACGTATTCGGGGGACCATGTCTATCAGTTTTCTCAGGGCGAGTAACGTACATATACGCGTTTAAATATAGGTCTGACCCTTCAGTTATGAGACTTATTTTAATTTTTTTCAAAAGAAGTTACAATTGATGAACCCTATACATGNNNNNNNNNNAATGAAAATGAAGAGAAACAACAAAAGAGAGTTCAGAATCTGGAAAGGGAAGCAATCGAAAGTTTAAAAAATTTTCGAAAATTTTCATGTATAGGGGTTCATGAATTGTAACTTTGTTTTTGAAAAAATTGAAATAAGTCTCGTAACTCAAGGACTCGACCTATATTTGAACGTTACTCGTCCTGAGAAAGCTGATAGACATGATCCCCCGAATACGTTTTTTCAAAAATTGGCATTTATTGATTTCTGTGGAACTCTAAGTTTTCATATTTTCTATTTTCCTGACTTTCCTATTGATAATGGAGCATAGGTGCAATTGAGATAAATGCTTGTCAGTTTATCACCTTTTAAATAAAAAAGTTTGACTGTCTGCCATGAAAATGAACAAATTTATGGTTTCCCGAAGGGTACCGACTCCGAACTCACGAAAAATCATAAATTGCCTCGCCATTTGAATAGACCTTCACGACGGCAGCTATAATTCTGGGGTTGTTCTAGCTAGACTGTGTACCACTATCTAGCATAGGTTTCATCTGAATCCCCGGGTAACATATGGAGGGTTCCCTTGTGAGTAAAATTTACTATGAACATTGGTGTCG</canonical_amplicon>
		<polymorphic_amplicon>ATGAGGCAAAGATTAGTCAAAAAAAAGCAACATATCTCGGTTCCTGATAATTATATCAAAAAGTTGTCAACTGATAAATTATTTATCATGATATTACAAACCTTTTACCAGTTGATTTTTGATATCTCGCATAGGAGCCAATTTTTGAAAAAAAACGTATTCGGGGGACCATGTCTATCAGTTTTCTCAGGGCGAGTAACGTACATATACGCGTTTAAATATAGGTCTGACCCTTCAGTTATGAGACTTATTTTAATTTTTTTCAAAAGAAGTTACAATTGATGAACCCTATACATGNNNNNNNNNNAATGAAAATGAAGAGAAACAACAAAAGAGAGTTCAGAATCTGGAAAGGGAAGCAATCGAAAGTTTAAAAAATTTTCGAAAATTTTCATGTATAGGGGTTCATGAATTGTAACTTTKTTTTTGAAAAAATTGAAATAAGTCTCGTAACTCAAGGACTCGACCTATATTTGAACGTTACTCGTCCTGAGAAAGCTGATAGACATGATCCCCCGAATACGTTTTTTCAAAAATTGGCATTTATTGATTTCTGTGGAACTCTAAGTTTTCATATTTTCTATTTTCCTGACTTTCCTATTGATAATGGAGCATAGGTGCAATTGAGATAAATGCTTGTCAGTTTATCACCTTTTAAATAAAAAAGTTTGACTGTCTGCCATGAAAATGAACAAATTTATGGTTTCCCGAAGGGTACCGACTCCGAACTCACGAAAAATCATAAATTGCCTCGCCATTTGAATAGACCTTCACGACGGCAGCTATAATTCTGGGGTTGTTCTAGCTAGACTGTGTACCACTATCTAGCATAGGTTTCATCTGAATCCCCGGGTAACATATGGAGGGTTCCCTTGTGAGTAAAATTTACTATGAACATTGGTGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23535</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1536063</contig_pos>
        <strand></strand>
        <context>gtgcaattga[G/C]ataaatgctt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TTTCTATTTTCCTGACTTTCCTATTGATAATGGAGCATAGGTGCAATTGA</left_flank>
        <right_flank>ATAAATGCTTGTCAGTTTATCACCTTTTAAATAAAAAAGTTTGACTGTCT</right_flank>
        <qual_score>49</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATAGGAGCCAATTTTTGAAAAAAAACGTATTCGGGGGACCATGTCTATCAGTTTTCTCAGGGCGAGTAACGTACATATACGCGTTTAAATATAGGTCTGACCCTTCAGTTATGAGACTTATTTTAATTTTTTTCAAAAGAAGTTACAATTGATGAACCCTATACATGNNNNNNNNNNAATGAAAATGAAGAGAAACAACAAAAGAGAGTTCAGAATCTGGAAAGGGAAGCAATCGAAAGTTTAAAAAATTTTCGAAAATTTTCATGTATAGGGGTTCATGAATTGTAACTTTGTTTTTGAAAAAATTGAAATAAGTCTCGTAACTCAAGGACTCGACCTATATTTGAACGTTACTCGTCCTGAGAAAGCTGATAGACATGATCCCCCGAATACGTTTTTTCAAAAATTGGCATTTATTGATTTCTGTGGAACTCTAAGTTTTCATATTTTCTATTTTCCTGACTTTCCTATTGATAATGGAGCATAGGTGCAATTGAGATAAATGCTTGTCAGTTTATCACCTTTTAAATAAAAAAGTTTGACTGTCTGCCATGAAAATGAACAAATTTATGGTTTCCCGAAGGGTACCGACTCCGAACTCACGAAAAATCATAAATTGCCTCGCCATTTGAATAGACCTTCACGACGGCAGCTATAATTCTGGGGTTGTTCTAGCTAGACTGTGTACCACTATCTAGCATAGGTTTCATCTGAATCCCCGGGTAACATATGGAGGGTTCCCTTGTGAGTAAAATTTACTATGAACATTGGTGTCGCAATTTTCGCACACAAAATCTGATTCCTGATTTGTTTTCCCGATTTAGTACAGTATAATTTTCCGAGGATCAAGTTTCTGAATTAAAAATTCTACTTCCTTATTATTCCTCTTCATTTCTTCCTTCTTCCAAATCAGAAACGAAAATATCAATTTTCACAGAATAATCACCTCAATATTATTTTCTTTCTAAATTTTTTTTTCTTAATCACTCATCCCAACG</canonical>
            <polymorphic>GCATAGGAGCCAATTTTTGAAAAAAAACGTATTCGGGGGACCATGTCTATCAGTTTTCTCAGGGCGAGTAACGTACATATACGCGTTTAAATATAGGTCTGACCCTTCAGTTATGAGACTTATTTTAATTTTTTTCAAAAGAAGTTACAATTGATGAACCCTATACATGNNNNNNNNNNAATGAAAATGAAGAGAAACAACAAAAGAGAGTTCAGAATCTGGAAAGGGAAGCAATCGAAAGTTTAAAAAATTTTCGAAAATTTTCATGTATAGGGGTTCATGAATTGTAACTTTGTTTTTGAAAAAATTGAAATAAGTCTCGTAACTCAAGGACTCGACCTATATTTGAACGTTACTCGTCCTGAGAAAGCTGATAGACATGATCCCCCGAATACGTTTTTTCAAAAATTGGCATTTATTGATTTCTGTGGAACTCTAAGTTTTCATATTTTCTATTTTCCTGACTTTCCTATTGATAATGGAGCATAGGTGCAATTGASATAAATGCTTGTCAGTTTATCACCTTTTAAATAAAAAAGTTTGACTGTCTGCCATGAAAATGAACAAATTTATGGTTTCCCGAAGGGTACCGACTCCGAACTCACGAAAAATCATAAATTGCCTCGCCATTTGAATAGACCTTCACGACGGCAGCTATAATTCTGGGGTTGTTCTAGCTAGACTGTGTACCACTATCTAGCATAGGTTTCATCTGAATCCCCGGGTAACATATGGAGGGTTCCCTTGTGAGTAAAATTTACTATGAACATTGGTGTCGCAATTTTCGCACACAAAATCTGATTCCTGATTTGTTTTCCCGATTTAGTACAGTATAATTTTCCGAGGATCAAGTTTCTGAATTAAAAATTCTACTTCCTTATTATTCCTCTTCATTTCTTCCTTCTTCCAAATCAGAAACGAAAATATCAATTTTCACAGAATAATCACCTCAATATTATTTTCTTTCTAAATTTTTTTTTCTTAATCACTCATCCCAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAGGCAAAGATTAGTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>CGACACCAATGTTCATAGTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>906</pcr_amplicon_size>
		<canonical_amplicon>AGATAAATGCTTGTCAGTTTATCACCTTTTAAATAAAAAAGTTTGACTGTCTGCCATGAAAATGAACAAATTTATGGTTTCCCGAAGGGTACCGACTCCGAACTCACGAAAAATCATAAATTGCCTCGCCATTTGAATAGACCTTCACGACGGCAGCTATAATTCTGGGGTTGTTCTAGCTAGACTGTGTACCACTATCTAGCATAGGTTTCATCTGAATCCCCGGGTAACATATGGAGGGTTCCCTTGTGAGTAAAATTTACTATGAACATTGGTGTCG</canonical_amplicon>
		<polymorphic_amplicon>ASATAAATGCTTGTCAGTTTATCACCTTTTAAATAAAAAAGTTTGACTGTCTGCCATGAAAATGAACAAATTTATGGTTTCCCGAAGGGTACCGACTCCGAACTCACGAAAAATCATAAATTGCCTCGCCATTTGAATAGACCTTCACGACGGCAGCTATAATTCTGGGGTTGTTCTAGCTAGACTGTGTACCACTATCTAGCATAGGTTTCATCTGAATCCCCGGGTAACATATGGAGGGTTCCCTTGTGAGTAAAATTTACTATGAACATTGGTGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23536</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1537602</contig_pos>
        <strand>+</strand>
        <context>TAGCTAAAGT[C/T]TAAGAAACCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCACTGATATTTTCGTGGGAAAAATTTGAATGTACTTAGTAGCTAAAGT</left_flank>
        <right_flank>TAAGAAACCGGAAATAAAAAGCAAGCGTTCACAAGGAGATACCGTAAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCAAAAGAAGAAGAAAAAACCATCGACATCGGATTATCACTCCCTCATAGCTAGCTTCCTAATCTTCTATTTCTCTGTCAACACATATCACCATATTCATAGCTCTTCAGCGCAATTCGAAAAAAGAAGAAAAACAAGTCTACAAACAAAATTAAGCTCGCAGTCGCAATGGAAAAAGGAGCAAAAAAGGAAACGGTTGCGTGATGAGAAGTGCTCAATAACTTCTGAGAATTGCCAGGAGGGTCTTCTTACCGTTTCCCGTTCATCCACTTCGTTGTCCCACTCGAGCCAATGAAAAAGCGCTGCTCCGAATGCAAGATATACAATCAAAATTAGGCAAATTAGTACGAAACGAGCATTCTCTTCGTAGATTCGCAGTCTTGCAAAGCAACCGACCTGGAAAAATATTCAGATGATGTCAATTTTTTCAAACTTCTTTCTGTCTGCGATCACTGATATTTTCGTGGGAAAAATTTGAATGTACTTAGTAGCTAAAGTCTAAGAAACCGGAAATAAAAAGCAAGCGTTCACAAGGAGATACCGTAAAACCTGTAATACAAGAGCCCCCTAACTCGGTTCCTGTCAAAGATACCAAAAAATTTTCAACTGATAAAGTGTTTATCATAATATCACAAACACTTTTGATAACTATCTAAAAAAAAATCATTCGAAACTTGACAGTGTGGGGGGGGGGGGGGGGGGGCTTCTATTACAGGTTCTATTTGAAAGCCCCAAGACTCACCTTTGCCCGAGTGATCGACGGCAGTGTGTTGGCGCGGAGCATCTCCCGTTGACCGATGCCACGAGCGAACTGTAACTTGTGCATGACAGTTTCAGTAATAGCCATCTACAAATGCTCAGTCTGTGTGGATTCTCCCTATGTGCAAATACTAAGAGAGCGATGGGGGGAGGAGATGTTGCTCCGCCAGAGTGCCTACAGTAATCCGTCGGAATATAAGACGACTTGAGAGGGAAAGAGAGGGGTGAAAGGGATAATCT</canonical>
            <polymorphic>GGCAAAAGAAGAAGAAAAAACCATCGACATCGGATTATCACTCCCTCATAGCTAGCTTCCTAATCTTCTATTTCTCTGTCAACACATATCACCATATTCATAGCTCTTCAGCGCAATTCGAAAAAAGAAGAAAAACAAGTCTACAAACAAAATTAAGCTCGCAGTCGCAATGGAAAAAGGAGCAAAAAAGGAAACGGTTGCGTGATGAGAAGTGCTCAATAACTTCTGAGAATTGCCAGGAGGGTCTTCTTACCGTTTCCCGTTCATCCACTTCGTTGTCCCACTCGAGCCAATGAAAAAGCGCTGCTCCGAATGCAAGATATACAATCAAAATTAGGCAAATTAGTACGAAACGAGCATTCTCTTCGTAGATTCGCAGTCTTGCAAAGCAACCGACCTGGAAAAATATTCAGATGATGTCAATTTTTTCAAACTTCTTTCTGTCTGCGATCACTGATATTTTCGTGGGAAAAATTTGAATGTACTTAGTAGCTAAAGTYTAAGAAACCGGAAATAAAAAGCAAGCGTTCACAAGGAGATACCGTAAAACCTGTAATACAAGAGCCCCCTAACTCGGTTCCTGTCAAAGATACCAAAAAATTTTCAACTGATAAAGTGTTTATCATAATATCACAAACACTTTTGATAACTATCTAAAAAAAAATCATTCGAAACTTGACAGTGTGGGGGGGGGGGGGGGGGGGCTTCTATTACAGGTTCTATTTGAAAGCCCCAAGACTCACCTTTGCCCGAGTGATCGACGGCAGTGTGTTGGCGCGGAGCATCTCCCGTTGACCGATGCCACGAGCGAACTGTAACTTGTGCATGACAGTTTCAGTAATAGCCATCTACAAATGCTCAGTCTGTGTGGATTCTCCCTATGTGCAAATACTAAGAGAGCGATGGGGGGAGGAGATGTTGCTCCGCCAGAGTGCCTACAGTAATCCGTCGGAATATAAGACGACTTGAGAGGGAAAGAGAGGGGTGAAAGGGATAATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>358 259 226 108 34 15</canonical_bands>
                <polymorphic_bands>373 259 226 108 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTCTGCGATCACTGATATT</pcr_primer_p1>
		<pcr_primer_p2>ACTGTCAAGTTTCGAATGATTT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTGTCTGCGATCACTGATATTTTCGTGGGAAAAATTTGAATGTACTTAGTAGCTAAAGTCTAAGAAACCGGAAATAAAAAGCAAGCGTTCACAAGGAGATACCGTAAAACCTGTAATACAAGAGCCCCCTAACTCGGTTCCTGTCAAAGATACCAAAAAATTTTCAACTGATAAAGTGTTTATCATAATATCACAAACACTTTTGATAACTATCTAAAAAAAAATCATTCGAAACTTGACAGT</canonical_amplicon>
		<polymorphic_amplicon>CTGTCTGCGATCACTGATATTTTCGTGGGAAAAATTTGAATGTACTTAGTAGCTAAAGTYTAAGAAACCGGAAATAAAAAGCAAGCGTTCACAAGGAGATACCGTAAAACCTGTAATACAAGAGCCCCCTAACTCGGTTCCTGTCAAAGATACCAAAAAATTTTCAACTGATAAAGTGTTTATCATAATATCACAAACACTTTTGATAACTATCTAAAAAAAAATCATTCGAAACTTGACAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23537</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1538111</contig_pos>
        <strand>+</strand>
        <context>CTGTCGTTAA[C/G]GAGCCGAAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGACGACTTGAGAGGGAAAGAGAGGGGTGAAAGGGATAATCTGTCGTTAA</left_flank>
        <right_flank>GAGCCGAAGGTGGAGATGGCTCCTAGAAGACGAAGAAGGGAATAAATTTA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAAATAAAAAGCAAGCGTTCACAAGGAGATACCGTAAAACCTGTAATACAAGAGCCCCCTAACTCGGTTCCTGTCAAAGATACCAAAAAATTTTCAACTGATAAAGTGTTTATCATAATATCACAAACACTTTTGATAACTATCTAAAAAAAAATCATTCGAAACTTGACAGTGTGGGGGGGGGGGGGGGGGGGCTTCTATTACAGGTTCTATTTGAAAGCCCCAAGACTCACCTTTGCCCGAGTGATCGACGGCAGTGTGTTGGCGCGGAGCATCTCCCGTTGACCGATGCCACGAGCGAACTGTAACTTGTGCATGACAGTTTCAGTAATAGCCATCTACAAATGCTCAGTCTGTGTGGATTCTCCCTATGTGCAAATACTAAGAGAGCGATGGGGGGAGGAGATGTTGCTCCGCCAGAGTGCCTACAGTAATCCGTCGGAATATAAGACGACTTGAGAGGGAAAGAGAGGGGTGAAAGGGATAATCTGTCGTTAACGAGCCGAAGGTGGAGATGGCTCCTAGAAGACGAAGAAGGGAATAAATTTAGATGCCGGAGCAAGAAGGGGCCAGGATCGAGATTCAGAGCTCTGTGTGGTGCGGCTGATAATATAATGGAGGTGCATACGCCCGGAGCAGGTGCTCTCTTCGACTCTCCGTCTCTCCACTCTCTCGCGCAATATTGTGGTTGGTGTGAAAGTGAAAAAGAGTGAGACACGCCTTCTCTATTCCAAAAGCAAATTTGGGAGGAAAAGTGAACAAGAGACGGGGGTGGATATCGAGGCGACTGGATAAGTGAGCAAACGGGAGAAAGAAAGCAGTAGAGAAAACTTTGATATGATTAGAAAGGTGTTATATCTACATGAACATTTCAAAGACTAGTTCAAAGGTAACCACATCGGAGTAATAGAAAGAACAGAAAAACTTTGGTTAGAAGAAAATCTGAGCAGGAAAAAAAAGACAGCATGACAGATGTGCGAGCTCTCAGATTATTCTTAT</canonical>
            <polymorphic>GGAAATAAAAAGCAAGCGTTCACAAGGAGATACCGTAAAACCTGTAATACAAGAGCCCCCTAACTCGGTTCCTGTCAAAGATACCAAAAAATTTTCAACTGATAAAGTGTTTATCATAATATCACAAACACTTTTGATAACTATCTAAAAAAAAATCATTCGAAACTTGACAGTGTGGGGGGGGGGGGGGGGGGGCTTCTATTACAGGTTCTATTTGAAAGCCCCAAGACTCACCTTTGCCCGAGTGATCGACGGCAGTGTGTTGGCGCGGAGCATCTCCCGTTGACCGATGCCACGAGCGAACTGTAACTTGTGCATGACAGTTTCAGTAATAGCCATCTACAAATGCTCAGTCTGTGTGGATTCTCCCTATGTGCAAATACTAAGAGAGCGATGGGGGGAGGAGATGTTGCTCCGCCAGAGTGCCTACAGTAATCCGTCGGAATATAAGACGACTTGAGAGGGAAAGAGAGGGGTGAAAGGGATAATCTGTCGTTAASGAGCCGAAGGTGGAGATGGCTCCTAGAAGACGAAGAAGGGAATAAATTTAGATGCCGGAGCAAGAAGGGGCCAGGATCGAGATTCAGAGCTCTGTGTGGTGCGGCTGATAATATAATGGAGGTGCATACGCCCGGAGCAGGTGCTCTCTTCGACTCTCCGTCTCTCCACTCTCTCGCGCAATATTGTGGTTGGTGTGAAAGTGAAAAAGAGTGAGACACGCCTTCTCTATTCCAAAAGCAAATTTGGGAGGAAAAGTGAACAAGAGACGGGGGTGGATATCGAGGCGACTGGATAAGTGAGCAAACGGGAGAAAGAAAGCAGTAGAGAAAACTTTGATATGATTAGAAAGGTGTTATATCTACATGAACATTTCAAAGACTAGTTCAAAGGTAACCACATCGGAGTAATAGAAAGAACAGAAAAACTTTGGTTAGAAGAAAATCTGAGCAGGAAAAAAAAGACAGCATGACAGATGTGCGAGCTCTCAGATTATTCTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTTAAC</site>
                <isoschizomers>
                    <enzyme>BstHPI</enzyme>
                    <enzyme>HpaI</enzyme>
                    <enzyme>KspAI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>503 284 213</canonical_bands>
                <polymorphic_bands>716 284</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>264 261 242 213 20</canonical_bands>
                <polymorphic_bands>474 264 242 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGCATGACAGTTTCAGTAATA</pcr_primer_p1>
		<pcr_primer_p2>GCATCTAAATTTATTCCCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TGTGCATGACAGTTTCAGTAATAGCCATCTACAAATGCTCAGTCTGTGTGGATTCTCCCTATGTGCAAATACTAAGAGAGCGATGGGGGGAGGAGATGTTGCTCCGCCAGAGTGCCTACAGTAATCCGTCGGAATATAAGACGACTTGAGAGGGAAAGAGAGGGGTGAAAGGGATAATCTGTCGTTAACGAGCCGAAGGTGGAGATGGCTCCTAGAAGACGAAGAAGGGAATAAATTTAGATGC</canonical_amplicon>
		<polymorphic_amplicon>TGTGCATGACAGTTTCAGTAATAGCCATCTACAAATGCTCAGTCTGTGTGGATTCTCCCTATGTGCAAATACTAAGAGAGCGATGGGGGGAGGAGATGTTGCTCCGCCAGAGTGCCTACAGTAATCCGTCGGAATATAAGACGACTTGAGAGGGAAAGAGAGGGGTGAAAGGGATAATCTGTCGTTAASGAGCCGAAGGTGGAGATGGCTCCTAGAAGACGAAGAAGGGAATAAATTTAGATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23538</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1577645</contig_pos>
        <strand>+</strand>
        <context>TTGCCCATCA[A/G]GAGGATTCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACGACATCACTTGAAAGTGCCTTTTTTGACACTTTCCTCTTGCCCATCA</left_flank>
        <right_flank>GAGGATTCTTAATTGAAATTAGATACTTTTTTCTCTTCCCTTGACAAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGATAATTCAAACTTGGGGACCCTTCTATTACAGGTTTTACGGTAATGGTCAGGAGAATATGATGTTTGCGGTAAAATCTTCTATGCTTTTCTATTTCTTCATCTTTAATTCACTACACACCAACAAAATAATTTCGAACCCACATCATCATCATAATCCCTTGAAGCCCTTTTGATAACAATAGTAATTAAATTATGAGTGTGTTATACTCTTGAGAGAAGAGACCAACTGATTCTGATTATAAATCTGCTAATCCCTCGGTTCTTATAGTTTATCTTCTTTTACAATTCCCAGATAGCTCCTTTTTCTATAGAGAAATCTCCTTTTTAAGAATTAGTTCTCTTTTATTTTTATTTCCAAAACTATCATCTAGGGACCTCCAAATCATTTCTTGGAGATTTGCACCTTTGGCGATCGCTTCCTCAACTTTTGATTCCTAAAATTCCTGACGACATCACTTGAAAGTGCCTTTTTTGACACTTTCCTCTTGCCCATCAGGAGGATTCTTAATTGAAATTAGATACTTTTTTCTCTTCCCTTGACAAGTTGTAGTGGAAAAAAACGAGTATTTTCGGACTATCCACCCACTTGATTCCTATTTTTTTGTAAACATGCACGTTATGTAGATATTTAGGTAGAATTCTATCTCAATTGTTAACATATTTCAATTTCAAATCACCGTTCTATGATATATTTTAAGATTTATTTCTCAGCCAGGATTATCGAAAATATCAGCTTATGAAGCATTTAAAAATTTATCCATTGCTTCTAGTAAATTCAAATTGAATATCCCGTTTTCTTTCTATCCTTCATTTTGATCAAATGCACAATCTCGGATATTCGGTACTCCTCGTTAATCACTTAACTACAGTAAAATCCGTAATAGAAAGGCCCCACGCACTGTCAAGTTTGAGCACAATTATCTCGGCTCGTATGTTAGATATCGAAAATGTGTCAACTGATAAAATGTTTGTGATATTATGAAAAACAGTTCACGA</canonical>
            <polymorphic>GAGATAATTCAAACTTGGGGACCCTTCTATTACAGGTTTTACGGTAATGGTCAGGAGAATATGATGTTTGCGGTAAAATCTTCTATGCTTTTCTATTTCTTCATCTTTAATTCACTACACACCAACAAAATAATTTCGAACCCACATCATCATCATAATCCCTTGAAGCCCTTTTGATAACAATAGTAATTAAATTATGAGTGTGTTATACTCTTGAGAGAAGAGACCAACTGATTCTGATTATAAATCTGCTAATCCCTCGGTTCTTATAGTTTATCTTCTTTTACAATTCCCAGATAGCTCCTTTTTCTATAGAGAAATCTCCTTTTTAAGAATTAGTTCTCTTTTATTTTTATTTCCAAAACTATCATCTAGGGACCTCCAAATCATTTCTTGGAGATTTGCACCTTTGGCGATCGCTTCCTCAACTTTTGATTCCTAAAATTCCTGACGACATCACTTGAAAGTGCCTTTTTTGACACTTTCCTCTTGCCCATCARGAGGATTCTTAATTGAAATTAGATACTTTTTTCTCTTCCCTTGACAAGTTGTAGTGGAAAAAAACGAGTATTTTCGGACTATCCACCCACTTGATTCCTATTTTTTTGTAAACATGCACGTTATGTAGATATTTAGGTAGAATTCTATCTCAATTGTTAACATATTTCAATTTCAAATCACCGTTCTATGATATATTTTAAGATTTATTTCTCAGCCAGGATTATCGAAAATATCAGCTTATGAAGCATTTAAAAATTTATCCATTGCTTCTAGTAAATTCAAATTGAATATCCCGTTTTCTTTCTATCCTTCATTTTGATCAAATGCACAATCTCGGATATTCGGTACTCCTCGTTAATCACTTAACTACAGTAAAATCCGTAATAGAAAGGCCCCACGCACTGTCAAGTTTGAGCACAATTATCTCGGCTCGTATGTTAGATATCGAAAATGTGTCAACTGATAAAATGTTTGTGATATTATGAAAAACAGTTCACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAATCATTTCTTGGAGATT</pcr_primer_p1>
		<pcr_primer_p2>CTACATAACGTGCATGTTTACAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCAAATCATTTCTTGGAGATTTGCACCTTTGGCGATCGCTTCCTCAACTTTTGATTCCTAAAATTCCTGACGACATCACTTGAAAGTGCCTTTTTTGACACTTTCCTCTTGCCCATCAGGAGGATTCTTAATTGAAATTAGATACTTTTTTCTCTTCCCTTGACAAGTTGTAGTGGAAAAAAACGAGTATTTTCGGACTATCCACCCACTTGATTCCTATTTTTTTGTAAACATGCACGTTATGTAG</canonical_amplicon>
		<polymorphic_amplicon>CCAAATCATTTCTTGGAGATTTGCACCTTTGGCGATCGCTTCCTCAACTTTTGATTCCTAAAATTCCTGACGACATCACTTGAAAGTGCCTTTTTTGACACTTTCCTCTTGCCCATCARGAGGATTCTTAATTGAAATTAGATACTTTTTTCTCTTCCCTTGACAAGTTGTAGTGGAAAAAAACGAGTATTTTCGGACTATCCACCCACTTGATTCCTATTTTTTTGTAAACATGCACGTTATGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23539</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1581438</contig_pos>
        <strand>+</strand>
        <context>GGTAGCAAAA[C/T]TGAGCCGATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAACATCCACGACGGAATGCTCTTCCTTTAGAAGATAATCGGTAGCAAAA</left_flank>
        <right_flank>TGAGCCGATGAGGTACAGCTTTCTTGGACCCAACGATCCTTTTCGTGACA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCTGTTTATCTTTAAATTAGTTACAGTATCCCGAAACCAGTGCTTATTCATTCGGGTTAATTTATGTTAAAGTTTTCATTTGACTATACAATTTCATTGGAATATTTGAATTGCGTGATATTTACAGAAATAAATTATTTTATACATGTTCTGTTGATATTTGGAGATCGGATTGAAAAAAGGAGAAGACTTGAAAATTACAAAATATAATTGATAAAGAAGATCAATAAAGTTCCTAAGATGAAAGTGGAGGAAACATCTCTGCTAGCAGCATTTTTCCAACTAACACCGCCGCCACGTTGATGGAAGAAGCTATCCCGTTCGTTATTGCATCTGAAAAGGACAATCTGTCAGAAGAACTCAGAATAAATAATCATACCTATCCTGACTACAAGTTCTACATTCCATATTAGATTCAAATCCGGGAAGTGTGTCACATGGAAAATCGGAACATCCACGACGGAATGCTCTTCCTTTAGAAGATAATCGGTAGCAAAACTGAGCCGATGAGGTACAGCTTTCTTGGACCCAACGATCCTTTTCGTGACATGTGGACCCATCACAAGTTTCGCAGATTAATGCAATTACGGAGCCTGGAAGCTTTATTAGTTTATGGGTCAATTGACGAATTTGCGAGAATTGGATCCATCTGTTCGAAAACTCAAATGCCCACGATAGAAAAATACCTAAAACATTTGTCCGAAATATCAAAAACTCACCAAAACCGAAAATCGTTAGGAAAATAGCAACTTTGAGCATGTTGATCACAAATGACAAAAATAGAGCAAAATGAGGAATACACTAACAATCAATAGTTGTTCTGTTATCAGTTTTTATGTTGTTGAGTGGGTTGTTATCATACTATTGTTAGGGGAAACGATGAGTCATTCGAACACAGTCAATGTTGGGAAAATATTAAAACTTTGTCACTTGAACATGAGTTCCCATTTTTCGAACGTTCGCTATTGTTGTCATTTCAACAACCGTATGAACTTTGAT</canonical>
            <polymorphic>CGCTGTTTATCTTTAAATTAGTTACAGTATCCCGAAACCAGTGCTTATTCATTCGGGTTAATTTATGTTAAAGTTTTCATTTGACTATACAATTTCATTGGAATATTTGAATTGCGTGATATTTACAGAAATAAATTATTTTATACATGTTCTGTTGATATTTGGAGATCGGATTGAAAAAAGGAGAAGACTTGAAAATTACAAAATATAATTGATAAAGAAGATCAATAAAGTTCCTAAGATGAAAGTGGAGGAAACATCTCTGCTAGCAGCATTTTTCCAACTAACACCGCCGCCACGTTGATGGAAGAAGCTATCCCGTTCGTTATTGCATCTGAAAAGGACAATCTGTCAGAAGAACTCAGAATAAATAATCATACCTATCCTGACTACAAGTTCTACATTCCATATTAGATTCAAATCCGGGAAGTGTGTCACATGGAAAATCGGAACATCCACGACGGAATGCTCTTCCTTTAGAAGATAATCGGTAGCAAAAYTGAGCCGATGAGGTACAGCTTTCTTGGACCCAACGATCCTTTTCGTGACATGTGGACCCATCACAAGTTTCGCAGATTAATGCAATTACGGAGCCTGGAAGCTTTATTAGTTTATGGGTCAATTGACGAATTTGCGAGAATTGGATCCATCTGTTCGAAAACTCAAATGCCCACGATAGAAAAATACCTAAAACATTTGTCCGAAATATCAAAAACTCACCAAAACCGAAAATCGTTAGGAAAATAGCAACTTTGAGCATGTTGATCACAAATGACAAAAATAGAGCAAAATGAGGAATACACTAACAATCAATAGTTGTTCTGTTATCAGTTTTTATGTTGTTGAGTGGGTTGTTATCATACTATTGTTAGGGGAAACGATGAGTCATTCGAACACAGTCAATGTTGGGAAAATATTAAAACTTTGTCACTTGAACATGAGTTCCCATTTTTCGAACGTTCGCTATTGTTGTCATTTCAACAACCGTATGAACTTTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 237 139 124</canonical_bands>
                <polymorphic_bands>639 237 124</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACAATCTGTCAGAAGAACTCAG</pcr_primer_p1>
		<pcr_primer_p2>CTCCGTAATTGCATTAATCTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GACAATCTGTCAGAAGAACTCAGAATAAATAATCATACCTATCCTGACTACAAGTTCTACATTCCATATTAGATTCAAATCCGGGAAGTGTGTCACATGGAAAATCGGAACATCCACGACGGAATGCTCTTCCTTTAGAAGATAATCGGTAGCAAAACTGAGCCGATGAGGTACAGCTTTCTTGGACCCAACGATCCTTTTCGTGACATGTGGACCCATCACAAGTTTCGCAGATTAATGCAATTACGGAG</canonical_amplicon>
		<polymorphic_amplicon>GACAATCTGTCAGAAGAACTCAGAATAAATAATCATACCTATCCTGACTACAAGTTCTACATTCCATATTAGATTCAAATCCGGGAAGTGTGTCACATGGAAAATCGGAACATCCACGACGGAATGCTCTTCCTTTAGAAGATAATCGGTAGCAAAAYTGAGCCGATGAGGTACAGCTTTCTTGGACCCAACGATCCTTTTCGTGACATGTGGACCCATCACAAGTTTCGCAGATTAATGCAATTACGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23540</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1581464</contig_pos>
        <strand>+</strand>
        <context>CAGCTTTCTT[A/G]GACCCAACGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTAGAAGATAATCGGTAGCAAAACTGAGCCGATGAGGTACAGCTTTCTT</left_flank>
        <right_flank>GACCCAACGATCCTTTTCGTGACATGTGGACCCATCACAAGTTTCGCAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATCCCGAAACCAGTGCTTATTCATTCGGGTTAATTTATGTTAAAGTTTTCATTTGACTATACAATTTCATTGGAATATTTGAATTGCGTGATATTTACAGAAATAAATTATTTTATACATGTTCTGTTGATATTTGGAGATCGGATTGAAAAAAGGAGAAGACTTGAAAATTACAAAATATAATTGATAAAGAAGATCAATAAAGTTCCTAAGATGAAAGTGGAGGAAACATCTCTGCTAGCAGCATTTTTCCAACTAACACCGCCGCCACGTTGATGGAAGAAGCTATCCCGTTCGTTATTGCATCTGAAAAGGACAATCTGTCAGAAGAACTCAGAATAAATAATCATACCTATCCTGACTACAAGTTCTACATTCCATATTAGATTCAAATCCGGGAAGTGTGTCACATGGAAAATCGGAACATCCACGACGGAATGCTCTTCCTTTAGAAGATAATCGGTAGCAAAACTGAGCCGATGAGGTACAGCTTTCTTGGACCCAACGATCCTTTTCGTGACATGTGGACCCATCACAAGTTTCGCAGATTAATGCAATTACGGAGCCTGGAAGCTTTATTAGTTTATGGGTCAATTGACGAATTTGCGAGAATTGGATCCATCTGTTCGAAAACTCAAATGCCCACGATAGAAAAATACCTAAAACATTTGTCCGAAATATCAAAAACTCACCAAAACCGAAAATCGTTAGGAAAATAGCAACTTTGAGCATGTTGATCACAAATGACAAAAATAGAGCAAAATGAGGAATACACTAACAATCAATAGTTGTTCTGTTATCAGTTTTTATGTTGTTGAGTGGGTTGTTATCATACTATTGTTAGGGGAAACGATGAGTCATTCGAACACAGTCAATGTTGGGAAAATATTAAAACTTTGTCACTTGAACATGAGTTCCCATTTTTCGAACGTTCGCTATTGTTGTCATTTCAACAACCGTATGAACTTTGATTCCTTAAACTTGAATTCTTATGCTTG</canonical>
            <polymorphic>GTATCCCGAAACCAGTGCTTATTCATTCGGGTTAATTTATGTTAAAGTTTTCATTTGACTATACAATTTCATTGGAATATTTGAATTGCGTGATATTTACAGAAATAAATTATTTTATACATGTTCTGTTGATATTTGGAGATCGGATTGAAAAAAGGAGAAGACTTGAAAATTACAAAATATAATTGATAAAGAAGATCAATAAAGTTCCTAAGATGAAAGTGGAGGAAACATCTCTGCTAGCAGCATTTTTCCAACTAACACCGCCGCCACGTTGATGGAAGAAGCTATCCCGTTCGTTATTGCATCTGAAAAGGACAATCTGTCAGAAGAACTCAGAATAAATAATCATACCTATCCTGACTACAAGTTCTACATTCCATATTAGATTCAAATCCGGGAAGTGTGTCACATGGAAAATCGGAACATCCACGACGGAATGCTCTTCCTTTAGAAGATAATCGGTAGCAAAACTGAGCCGATGAGGTACAGCTTTCTTRGACCCAACGATCCTTTTCGTGACATGTGGACCCATCACAAGTTTCGCAGATTAATGCAATTACGGAGCCTGGAAGCTTTATTAGTTTATGGGTCAATTGACGAATTTGCGAGAATTGGATCCATCTGTTCGAAAACTCAAATGCCCACGATAGAAAAATACCTAAAACATTTGTCCGAAATATCAAAAACTCACCAAAACCGAAAATCGTTAGGAAAATAGCAACTTTGAGCATGTTGATCACAAATGACAAAAATAGAGCAAAATGAGGAATACACTAACAATCAATAGTTGTTCTGTTATCAGTTTTTATGTTGTTGAGTGGGTTGTTATCATACTATTGTTAGGGGAAACGATGAGTCATTCGAACACAGTCAATGTTGGGAAAATATTAAAACTTTGTCACTTGAACATGAGTTCCCATTTTTCGAACGTTCGCTATTGTTGTCATTTCAACAACCGTATGAACTTTGATTCCTTAAACTTGAATTCTTATGCTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>500 472 28</canonical_bands>
                <polymorphic_bands>528 472</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 472 28</canonical_bands>
                <polymorphic_bands>528 472</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 381 53 36 28</canonical_bands>
                <polymorphic_bands>530 381 53 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACAATCTGTCAGAAGAACTCAG</pcr_primer_p1>
		<pcr_primer_p2>CTCCGTAATTGCATTAATCTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GACAATCTGTCAGAAGAACTCAGAATAAATAATCATACCTATCCTGACTACAAGTTCTACATTCCATATTAGATTCAAATCCGGGAAGTGTGTCACATGGAAAATCGGAACATCCACGACGGAATGCTCTTCCTTTAGAAGATAATCGGTAGCAAAACTGAGCCGATGAGGTACAGCTTTCTTGGACCCAACGATCCTTTTCGTGACATGTGGACCCATCACAAGTTTCGCAGATTAATGCAATTACGGAG</canonical_amplicon>
		<polymorphic_amplicon>GACAATCTGTCAGAAGAACTCAGAATAAATAATCATACCTATCCTGACTACAAGTTCTACATTCCATATTAGATTCAAATCCGGGAAGTGTGTCACATGGAAAATCGGAACATCCACGACGGAATGCTCTTCCTTTAGAAGATAATCGGTAGCAAAACTGAGCCGATGAGGTACAGCTTTCTTRGACCCAACGATCCTTTTCGTGACATGTGGACCCATCACAAGTTTCGCAGATTAATGCAATTACGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23541</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1581557</contig_pos>
        <strand>+</strand>
        <context>AGTTTATGGG[C/T]CAATTGACGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCGCAGATTAATGCAATTACGGAGCCTGGAAGCTTTATTAGTTTATGGG</left_flank>
        <right_flank>CAATTGACGAATTTGCGAGAATTGGATCCATCTGTTCGAAAACTCAAATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTACAGAAATAAATTATTTTATACATGTTCTGTTGATATTTGGAGATCGGATTGAAAAAAGGAGAAGACTTGAAAATTACAAAATATAATTGATAAAGAAGATCAATAAAGTTCCTAAGATGAAAGTGGAGGAAACATCTCTGCTAGCAGCATTTTTCCAACTAACACCGCCGCCACGTTGATGGAAGAAGCTATCCCGTTCGTTATTGCATCTGAAAAGGACAATCTGTCAGAAGAACTCAGAATAAATAATCATACCTATCCTGACTACAAGTTCTACATTCCATATTAGATTCAAATCCGGGAAGTGTGTCACATGGAAAATCGGAACATCCACGACGGAATGCTCTTCCTTTAGAAGATAATCGGTAGCAAAACTGAGCCGATGAGGTACAGCTTTCTTGGACCCAACGATCCTTTTCGTGACATGTGGACCCATCACAAGTTTCGCAGATTAATGCAATTACGGAGCCTGGAAGCTTTATTAGTTTATGGGTCAATTGACGAATTTGCGAGAATTGGATCCATCTGTTCGAAAACTCAAATGCCCACGATAGAAAAATACCTAAAACATTTGTCCGAAATATCAAAAACTCACCAAAACCGAAAATCGTTAGGAAAATAGCAACTTTGAGCATGTTGATCACAAATGACAAAAATAGAGCAAAATGAGGAATACACTAACAATCAATAGTTGTTCTGTTATCAGTTTTTATGTTGTTGAGTGGGTTGTTATCATACTATTGTTAGGGGAAACGATGAGTCATTCGAACACAGTCAATGTTGGGAAAATATTAAAACTTTGTCACTTGAACATGAGTTCCCATTTTTCGAACGTTCGCTATTGTTGTCATTTCAACAACCGTATGAACTTTGATTCCTTAAACTTGAATTCTTATGCTTGAAACAAAAACTAATAGCATACCAACTGGGAGAAAGAAAAAACGACGACATAAAATAAATAAGTGTAATCTGTACGGTTTATGAACAAGTATTG</canonical>
            <polymorphic>TATTTACAGAAATAAATTATTTTATACATGTTCTGTTGATATTTGGAGATCGGATTGAAAAAAGGAGAAGACTTGAAAATTACAAAATATAATTGATAAAGAAGATCAATAAAGTTCCTAAGATGAAAGTGGAGGAAACATCTCTGCTAGCAGCATTTTTCCAACTAACACCGCCGCCACGTTGATGGAAGAAGCTATCCCGTTCGTTATTGCATCTGAAAAGGACAATCTGTCAGAAGAACTCAGAATAAATAATCATACCTATCCTGACTACAAGTTCTACATTCCATATTAGATTCAAATCCGGGAAGTGTGTCACATGGAAAATCGGAACATCCACGACGGAATGCTCTTCCTTTAGAAGATAATCGGTAGCAAAACTGAGCCGATGAGGTACAGCTTTCTTGGACCCAACGATCCTTTTCGTGACATGTGGACCCATCACAAGTTTCGCAGATTAATGCAATTACGGAGCCTGGAAGCTTTATTAGTTTATGGGYCAATTGACGAATTTGCGAGAATTGGATCCATCTGTTCGAAAACTCAAATGCCCACGATAGAAAAATACCTAAAACATTTGTCCGAAATATCAAAAACTCACCAAAACCGAAAATCGTTAGGAAAATAGCAACTTTGAGCATGTTGATCACAAATGACAAAAATAGAGCAAAATGAGGAATACACTAACAATCAATAGTTGTTCTGTTATCAGTTTTTATGTTGTTGAGTGGGTTGTTATCATACTATTGTTAGGGGAAACGATGAGTCATTCGAACACAGTCAATGTTGGGAAAATATTAAAACTTTGTCACTTGAACATGAGTTCCCATTTTTCGAACGTTCGCTATTGTTGTCATTTCAACAACCGTATGAACTTTGATTCCTTAAACTTGAATTCTTATGCTTGAAACAAAAACTAATAGCATACCAACTGGGAGAAAGAAAAAACGACGACATAAAATAAATAAGTGTAATCTGTACGGTTTATGAACAAGTATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGAAGATAATCGGTAGCAAAA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTGGTGAGTTTTTGATATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAGAAGATAATCGGTAGCAAAACTGAGCCGATGAGGTACAGCTTTCTTGGACCCAACGATCCTTTTCGTGACATGTGGACCCATCACAAGTTTCGCAGATTAATGCAATTACGGAGCCTGGAAGCTTTATTAGTTTATGGGTCAATTGACGAATTTGCGAGAATTGGATCCATCTGTTCGAAAACTCAAATGCCCACGATAGAAAAATACCTAAAACATTTGTCCGAAATATCAAAAACTCACCAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TTAGAAGATAATCGGTAGCAAAACTGAGCCGATGAGGTACAGCTTTCTTGGACCCAACGATCCTTTTCGTGACATGTGGACCCATCACAAGTTTCGCAGATTAATGCAATTACGGAGCCTGGAAGCTTTATTAGTTTATGGGYCAATTGACGAATTTGCGAGAATTGGATCCATCTGTTCGAAAACTCAAATGCCCACGATAGAAAAATACCTAAAACATTTGTCCGAAATATCAAAAACTCACCAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23542</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1581595</contig_pos>
        <strand>+</strand>
        <context>CCATCTGTTC[C/G]AAAACTCAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTAGTTTATGGGTCAATTGACGAATTTGCGAGAATTGGATCCATCTGTTC</left_flank>
        <right_flank>AAAACTCAAATGCCCACGATAGAAAAATACCTAAAACATTTGTCCGAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATTTGGAGATCGGATTGAAAAAAGGAGAAGACTTGAAAATTACAAAATATAATTGATAAAGAAGATCAATAAAGTTCCTAAGATGAAAGTGGAGGAAACATCTCTGCTAGCAGCATTTTTCCAACTAACACCGCCGCCACGTTGATGGAAGAAGCTATCCCGTTCGTTATTGCATCTGAAAAGGACAATCTGTCAGAAGAACTCAGAATAAATAATCATACCTATCCTGACTACAAGTTCTACATTCCATATTAGATTCAAATCCGGGAAGTGTGTCACATGGAAAATCGGAACATCCACGACGGAATGCTCTTCCTTTAGAAGATAATCGGTAGCAAAACTGAGCCGATGAGGTACAGCTTTCTTGGACCCAACGATCCTTTTCGTGACATGTGGACCCATCACAAGTTTCGCAGATTAATGCAATTACGGAGCCTGGAAGCTTTATTAGTTTATGGGTCAATTGACGAATTTGCGAGAATTGGATCCATCTGTTCGAAAACTCAAATGCCCACGATAGAAAAATACCTAAAACATTTGTCCGAAATATCAAAAACTCACCAAAACCGAAAATCGTTAGGAAAATAGCAACTTTGAGCATGTTGATCACAAATGACAAAAATAGAGCAAAATGAGGAATACACTAACAATCAATAGTTGTTCTGTTATCAGTTTTTATGTTGTTGAGTGGGTTGTTATCATACTATTGTTAGGGGAAACGATGAGTCATTCGAACACAGTCAATGTTGGGAAAATATTAAAACTTTGTCACTTGAACATGAGTTCCCATTTTTCGAACGTTCGCTATTGTTGTCATTTCAACAACCGTATGAACTTTGATTCCTTAAACTTGAATTCTTATGCTTGAAACAAAAACTAATAGCATACCAACTGGGAGAAAGAAAAAACGACGACATAAAATAAATAAGTGTAATCTGTACGGTTTATGAACAAGTATTGTAGTCATTGTGGACAATAGGCCATGAGTTGCTATTAGA</canonical>
            <polymorphic>ATATTTGGAGATCGGATTGAAAAAAGGAGAAGACTTGAAAATTACAAAATATAATTGATAAAGAAGATCAATAAAGTTCCTAAGATGAAAGTGGAGGAAACATCTCTGCTAGCAGCATTTTTCCAACTAACACCGCCGCCACGTTGATGGAAGAAGCTATCCCGTTCGTTATTGCATCTGAAAAGGACAATCTGTCAGAAGAACTCAGAATAAATAATCATACCTATCCTGACTACAAGTTCTACATTCCATATTAGATTCAAATCCGGGAAGTGTGTCACATGGAAAATCGGAACATCCACGACGGAATGCTCTTCCTTTAGAAGATAATCGGTAGCAAAACTGAGCCGATGAGGTACAGCTTTCTTGGACCCAACGATCCTTTTCGTGACATGTGGACCCATCACAAGTTTCGCAGATTAATGCAATTACGGAGCCTGGAAGCTTTATTAGTTTATGGGTCAATTGACGAATTTGCGAGAATTGGATCCATCTGTTCSAAAACTCAAATGCCCACGATAGAAAAATACCTAAAACATTTGTCCGAAATATCAAAAACTCACCAAAACCGAAAATCGTTAGGAAAATAGCAACTTTGAGCATGTTGATCACAAATGACAAAAATAGAGCAAAATGAGGAATACACTAACAATCAATAGTTGTTCTGTTATCAGTTTTTATGTTGTTGAGTGGGTTGTTATCATACTATTGTTAGGGGAAACGATGAGTCATTCGAACACAGTCAATGTTGGGAAAATATTAAAACTTTGTCACTTGAACATGAGTTCCCATTTTTCGAACGTTCGCTATTGTTGTCATTTCAACAACCGTATGAACTTTGATTCCTTAAACTTGAATTCTTATGCTTGAAACAAAAACTAATAGCATACCAACTGGGAGAAAGAAAAAACGACGACATAAAATAAATAAGTGTAATCTGTACGGTTTATGAACAAGTATTGTAGTCATTGTGGACAATAGGCCATGAGTTGCTATTAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>498 235 204 63</canonical_bands>
                <polymorphic_bands>733 204 63</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 235 203 63</canonical_bands>
                <polymorphic_bands>734 203 63</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGAAGATAATCGGTAGCAAAA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTGGTGAGTTTTTGATATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAGAAGATAATCGGTAGCAAAACTGAGCCGATGAGGTACAGCTTTCTTGGACCCAACGATCCTTTTCGTGACATGTGGACCCATCACAAGTTTCGCAGATTAATGCAATTACGGAGCCTGGAAGCTTTATTAGTTTATGGGTCAATTGACGAATTTGCGAGAATTGGATCCATCTGTTCGAAAACTCAAATGCCCACGATAGAAAAATACCTAAAACATTTGTCCGAAATATCAAAAACTCACCAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TTAGAAGATAATCGGTAGCAAAACTGAGCCGATGAGGTACAGCTTTCTTGGACCCAACGATCCTTTTCGTGACATGTGGACCCATCACAAGTTTCGCAGATTAATGCAATTACGGAGCCTGGAAGCTTTATTAGTTTATGGGTCAATTGACGAATTTGCGAGAATTGGATCCATCTGTTCSAAAACTCAAATGCCCACGATAGAAAAATACCTAAAACATTTGTCCGAAATATCAAAAACTCACCAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23543</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1581639</contig_pos>
        <strand>+</strand>
        <context>AAACATTTGT[C/T]CGAAATATCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGTTCGAAAACTCAAATGCCCACGATAGAAAAATACCTAAAACATTTGT</left_flank>
        <right_flank>CGAAATATCAAAAACTCACCAAAACCGAAAATCGTTAGGAAAATAGCAAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAATATAATTGATAAAGAAGATCAATAAAGTTCCTAAGATGAAAGTGGAGGAAACATCTCTGCTAGCAGCATTTTTCCAACTAACACCGCCGCCACGTTGATGGAAGAAGCTATCCCGTTCGTTATTGCATCTGAAAAGGACAATCTGTCAGAAGAACTCAGAATAAATAATCATACCTATCCTGACTACAAGTTCTACATTCCATATTAGATTCAAATCCGGGAAGTGTGTCACATGGAAAATCGGAACATCCACGACGGAATGCTCTTCCTTTAGAAGATAATCGGTAGCAAAACTGAGCCGATGAGGTACAGCTTTCTTGGACCCAACGATCCTTTTCGTGACATGTGGACCCATCACAAGTTTCGCAGATTAATGCAATTACGGAGCCTGGAAGCTTTATTAGTTTATGGGTCAATTGACGAATTTGCGAGAATTGGATCCATCTGTTCGAAAACTCAAATGCCCACGATAGAAAAATACCTAAAACATTTGTCCGAAATATCAAAAACTCACCAAAACCGAAAATCGTTAGGAAAATAGCAACTTTGAGCATGTTGATCACAAATGACAAAAATAGAGCAAAATGAGGAATACACTAACAATCAATAGTTGTTCTGTTATCAGTTTTTATGTTGTTGAGTGGGTTGTTATCATACTATTGTTAGGGGAAACGATGAGTCATTCGAACACAGTCAATGTTGGGAAAATATTAAAACTTTGTCACTTGAACATGAGTTCCCATTTTTCGAACGTTCGCTATTGTTGTCATTTCAACAACCGTATGAACTTTGATTCCTTAAACTTGAATTCTTATGCTTGAAACAAAAACTAATAGCATACCAACTGGGAGAAAGAAAAAACGACGACATAAAATAAATAAGTGTAATCTGTACGGTTTATGAACAAGTATTGTAGTCATTGTGGACAATAGGCCATGAGTTGCTATTAGACAAAGCCCAGGTTGGACATATTCTGAAAATTTGAACAGATTTGA</canonical>
            <polymorphic>CAAAATATAATTGATAAAGAAGATCAATAAAGTTCCTAAGATGAAAGTGGAGGAAACATCTCTGCTAGCAGCATTTTTCCAACTAACACCGCCGCCACGTTGATGGAAGAAGCTATCCCGTTCGTTATTGCATCTGAAAAGGACAATCTGTCAGAAGAACTCAGAATAAATAATCATACCTATCCTGACTACAAGTTCTACATTCCATATTAGATTCAAATCCGGGAAGTGTGTCACATGGAAAATCGGAACATCCACGACGGAATGCTCTTCCTTTAGAAGATAATCGGTAGCAAAACTGAGCCGATGAGGTACAGCTTTCTTGGACCCAACGATCCTTTTCGTGACATGTGGACCCATCACAAGTTTCGCAGATTAATGCAATTACGGAGCCTGGAAGCTTTATTAGTTTATGGGTCAATTGACGAATTTGCGAGAATTGGATCCATCTGTTCGAAAACTCAAATGCCCACGATAGAAAAATACCTAAAACATTTGTYCGAAATATCAAAAACTCACCAAAACCGAAAATCGTTAGGAAAATAGCAACTTTGAGCATGTTGATCACAAATGACAAAAATAGAGCAAAATGAGGAATACACTAACAATCAATAGTTGTTCTGTTATCAGTTTTTATGTTGTTGAGTGGGTTGTTATCATACTATTGTTAGGGGAAACGATGAGTCATTCGAACACAGTCAATGTTGGGAAAATATTAAAACTTTGTCACTTGAACATGAGTTCCCATTTTTCGAACGTTCGCTATTGTTGTCATTTCAACAACCGTATGAACTTTGATTCCTTAAACTTGAATTCTTATGCTTGAAACAAAAACTAATAGCATACCAACTGGGAGAAAGAAAAAACGACGACATAAAATAAATAAGTGTAATCTGTACGGTTTATGAACAAGTATTGTAGTCATTGTGGACAATAGGCCATGAGTTGCTATTAGACAAAGCCCAGGTTGGACATATTCTGAAAATTTGAACAGATTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>479 253 135 85 20 18 10</canonical_bands>
                <polymorphic_bands>732 135 85 20 18 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTGGAAGCTTTATTAGTTTATG</pcr_primer_p1>
		<pcr_primer_p2>CAACATAAAAACTGATAACAGAACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCTGGAAGCTTTATTAGTTTATGGGTCAATTGACGAATTTGCGAGAATTGGATCCATCTGTTCGAAAACTCAAATGCCCACGATAGAAAAATACCTAAAACATTTGTCCGAAATATCAAAAACTCACCAAAACCGAAAATCGTTAGGAAAATAGCAACTTTGAGCATGTTGATCACAAATGACAAAAATAGAGCAAAATGAGGAATACACTAACAATCAATAGTTGTTCTGTTATCAGTTTTTATGTTG</canonical_amplicon>
		<polymorphic_amplicon>CCTGGAAGCTTTATTAGTTTATGGGTCAATTGACGAATTTGCGAGAATTGGATCCATCTGTTCGAAAACTCAAATGCCCACGATAGAAAAATACCTAAAACATTTGTYCGAAATATCAAAAACTCACCAAAACCGAAAATCGTTAGGAAAATAGCAACTTTGAGCATGTTGATCACAAATGACAAAAATAGAGCAAAATGAGGAATACACTAACAATCAATAGTTGTTCTGTTATCAGTTTTTATGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23544</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1581727</contig_pos>
        <strand>+</strand>
        <context>AAATAGAGCA[A/G]AATGAGGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAAAATAGCAACTTTGAGCATGTTGATCACAAATGACAAAAATAGAGCA</left_flank>
        <right_flank>AATGAGGAATACACTAACAATCAATAGTTGTTCTGTTATCAGTTTTTATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGCCGCCACGTTGATGGAAGAAGCTATCCCGTTCGTTATTGCATCTGAAAAGGACAATCTGTCAGAAGAACTCAGAATAAATAATCATACCTATCCTGACTACAAGTTCTACATTCCATATTAGATTCAAATCCGGGAAGTGTGTCACATGGAAAATCGGAACATCCACGACGGAATGCTCTTCCTTTAGAAGATAATCGGTAGCAAAACTGAGCCGATGAGGTACAGCTTTCTTGGACCCAACGATCCTTTTCGTGACATGTGGACCCATCACAAGTTTCGCAGATTAATGCAATTACGGAGCCTGGAAGCTTTATTAGTTTATGGGTCAATTGACGAATTTGCGAGAATTGGATCCATCTGTTCGAAAACTCAAATGCCCACGATAGAAAAATACCTAAAACATTTGTCCGAAATATCAAAAACTCACCAAAACCGAAAATCGTTAGGAAAATAGCAACTTTGAGCATGTTGATCACAAATGACAAAAATAGAGCAAAATGAGGAATACACTAACAATCAATAGTTGTTCTGTTATCAGTTTTTATGTTGTTGAGTGGGTTGTTATCATACTATTGTTAGGGGAAACGATGAGTCATTCGAACACAGTCAATGTTGGGAAAATATTAAAACTTTGTCACTTGAACATGAGTTCCCATTTTTCGAACGTTCGCTATTGTTGTCATTTCAACAACCGTATGAACTTTGATTCCTTAAACTTGAATTCTTATGCTTGAAACAAAAACTAATAGCATACCAACTGGGAGAAAGAAAAAACGACGACATAAAATAAATAAGTGTAATCTGTACGGTTTATGAACAAGTATTGTAGTCATTGTGGACAATAGGCCATGAGTTGCTATTAGACAAAGCCCAGGTTGGACATATTCTGAAAATTTGAACAGATTTGAATTAAATTCTGTTTAAATAATCACTTTGATCCCAGTTTTTAATCAGCAGCAGAAGAATCAACCCGAGACCAGCTGGTAAAACGAGAGC</canonical>
            <polymorphic>CCGCCGCCACGTTGATGGAAGAAGCTATCCCGTTCGTTATTGCATCTGAAAAGGACAATCTGTCAGAAGAACTCAGAATAAATAATCATACCTATCCTGACTACAAGTTCTACATTCCATATTAGATTCAAATCCGGGAAGTGTGTCACATGGAAAATCGGAACATCCACGACGGAATGCTCTTCCTTTAGAAGATAATCGGTAGCAAAACTGAGCCGATGAGGTACAGCTTTCTTGGACCCAACGATCCTTTTCGTGACATGTGGACCCATCACAAGTTTCGCAGATTAATGCAATTACGGAGCCTGGAAGCTTTATTAGTTTATGGGTCAATTGACGAATTTGCGAGAATTGGATCCATCTGTTCGAAAACTCAAATGCCCACGATAGAAAAATACCTAAAACATTTGTCCGAAATATCAAAAACTCACCAAAACCGAAAATCGTTAGGAAAATAGCAACTTTGAGCATGTTGATCACAAATGACAAAAATAGAGCARAATGAGGAATACACTAACAATCAATAGTTGTTCTGTTATCAGTTTTTATGTTGTTGAGTGGGTTGTTATCATACTATTGTTAGGGGAAACGATGAGTCATTCGAACACAGTCAATGTTGGGAAAATATTAAAACTTTGTCACTTGAACATGAGTTCCCATTTTTCGAACGTTCGCTATTGTTGTCATTTCAACAACCGTATGAACTTTGATTCCTTAAACTTGAATTCTTATGCTTGAAACAAAAACTAATAGCATACCAACTGGGAGAAAGAAAAAACGACGACATAAAATAAATAAGTGTAATCTGTACGGTTTATGAACAAGTATTGTAGTCATTGTGGACAATAGGCCATGAGTTGCTATTAGACAAAGCCCAGGTTGGACATATTCTGAAAATTTGAACAGATTTGAATTAAATTCTGTTTAAATAATCACTTTGATCCCAGTTTTTAATCAGCAGCAGAAGAATCAACCCGAGACCAGCTGGTAAAACGAGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACGATAGAAAAATACCTAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTAATATTTTCCCAACATTGACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCACGATAGAAAAATACCTAAAACATTTGTCCGAAATATCAAAAACTCACCAAAACCGAAAATCGTTAGGAAAATAGCAACTTTGAGCATGTTGATCACAAATGACAAAAATAGAGCAAAATGAGGAATACACTAACAATCAATAGTTGTTCTGTTATCAGTTTTTATGTTGTTGAGTGGGTTGTTATCATACTATTGTTAGGGGAAACGATGAGTCATTCGAACACAGTCAATGTTGGGAAAATATTAA</canonical_amplicon>
		<polymorphic_amplicon>CCACGATAGAAAAATACCTAAAACATTTGTCCGAAATATCAAAAACTCACCAAAACCGAAAATCGTTAGGAAAATAGCAACTTTGAGCATGTTGATCACAAATGACAAAAATAGAGCARAATGAGGAATACACTAACAATCAATAGTTGTTCTGTTATCAGTTTTTATGTTGTTGAGTGGGTTGTTATCATACTATTGTTAGGGGAAACGATGAGTCATTCGAACACAGTCAATGTTGGGAAAATATTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23545</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1598440</contig_pos>
        <strand>+</strand>
        <context>TATAGCTCGA[C/T]AGTARTATCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAACTATTAATTTTTAGGTGTATTGTAAAACCTTTAATGTATAGCTCGA</left_flank>
        <right_flank>AGTAATATCAGCAATTTCATTTCTGAATGAATAGTCAGCTGGTGTTTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGCCGAGTATGAAGATACTCAGTGGGCAGCTTTCGCTTCCTTTCTTGTCTACTTTTTTGGCACTTTTTTCTTTTTCTTCAATCTAGTCTCTTCGATTTCATCTTCCTCTTTCTCGTTTCTCTCTTCTTCCTCATCATCATCCATTTTCCTTCCTTCTCCGTCTTTCATACTGTTGTCGCTGTCTTCTTTTTCCTCCTCATTTTCTTTCTCTTCTTCGTCGAACACCGATTCCTCTTCGTCACTATCGGCCATTCCCAAGTGAGCCCAAATATCGTCGACCTGTAATTTGGATAAGACACATACTGTTAGTTGGAATTTTATATTTACGTCAAATACGTCCTTTGAGAGCTCTTCATCTAACTCATGCTCGTCGCAATCTGAGCCTTCATCTTCGTCTTCTAGTTCATCAGCATGTGTAGCTATTTTTTATAAAAAGTCAAAATTGCTCAAACTATTAATTTTTAGGTGTATTGTAAAACCTTTAATGTATAGCTCGACAGTAATATCAGCAATTTCATTTCTGAATGAATAGTCAGCTGGTGTTTTCTCTTTTCGGACCGACCATTGCTTAGTGGTCTTGTTGAAGAACCTTTTCTCAGCAATTACAACGCGTTTTCCGTTGAGCTCATCTAGCTGTTTGCTATTCCAATCCAACACTGCGAGCTGTGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCCTGGAAAATTAAGATCATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGCTCTCGCGTTGAAGGACTCGACTGCGCTCGTAGCGAAATACGGGGATACTCTTCCGATTGCCTCACAACGGTCCCCTTTCTCAATGACAGCTAAGAGAGCATTCAGAGCTTTGACGTGCAGGGGATTTTTGGTATCCAGAAAATCTGGTCTTTTTCTGTTGACGTCATCCGATTCATTGTGCTCGCAAGAGTTCACTATTTTGAAGTCATACCAACCAGAATCCTAAAAAGT</canonical>
            <polymorphic>TTTGCCGAGTATGAAGATACTCAGTGGGCAGCTTTCGCTTCCTTTCTTGTCTACTTTTTTGGCACTTTTTTCTTTTTCTTCAATCTAGTCTCTTCGATTTCATCTTCCTCTTTCTCGTTTCTCTCTTCTTCCTCATCATCATCCATTTTCCTTCCTTCTCCGTCTTTCATACTGTTGTCGCTGTCTTCTTTTTCCTCCTCATTTTCTTTCTCTTCTTCGTCGAACACCGATTCCTCTTCGTCACTATCGGCCATTCCCAAGTGAGCCCAAATATCGTCGACCTGTAATTTGGATAAGACACATACTGTTAGTTGGAATTTTATATTTACGTCAAATACGTCCTTTGAGAGCTCTTCATCTAACTCATGCTCGTCGCAATCTGAGCCTTCATCTTCGTCTTCTAGTTCATCAGCATGTGTAGCTATTTTTTATAAAAAGTCAAAATTGCTCAAACTATTAATTTTTAGGTGTATTGTAAAACCTTTAATGTATAGCTCGAYAGTAATATCAGCAATTTCATTTCTGAATGAATAGTCAGCTGGTGTTTTCTCTTTTCGGACCGACCATTGCTTAGTGGTCTTGTTGAAGAACCTTTTCTCAGCAATTACAACGCGTTTTCCGTTGAGCTCATCTAGCTGTTTGCTATTCCAATCCAACACTGCGAGCTGTGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCCTGGAAAATTAAGATCATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGCTCTCGCGTTGAAGGACTCGACTGCGCTCGTAGCGAAATACGGGGATACTCTTCCGATTGCCTCACAACGGTCCCCTTTCTCAATGACAGCTAAGAGAGCATTCAGAGCTTTGACGTGCAGGGGATTTTTGGTATCCAGAAAATCTGGTCTTTTTCTGTTGACGTCATCCGATTCATTGTGCTCGCAAGAGTTCACTATTTTGAAGTCATACCAACCAGAATCCTAAAAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>195 176 173 162 161 133</canonical_bands>
                <polymorphic_bands>371 173 162 161 133</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGAGCTCTTCATCTAACTCAT</pcr_primer_p1>
		<pcr_primer_p2>AGGTTCTTCAACAAGACCACTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAGAGCTCTTCATCTAACTCATGCTCGTCGCAATCTGAGCCTTCATCTTCGTCTTCTAGTTCATCAGCATGTGTAGCTATTTTTTATAAAAAGTCAAAATTGCTCAAACTATTAATTTTTAGGTGTATTGTAAAACCTTTAATGTATAGCTCGACAGTAATATCAGCAATTTCATTTCTGAATGAATAGTCAGCTGGTGTTTTCTCTTTTCGGACCGACCATTGCTTAGTGGTCTTGTTGAAGAACCT</canonical_amplicon>
		<polymorphic_amplicon>TGAGAGCTCTTCATCTAACTCATGCTCGTCGCAATCTGAGCCTTCATCTTCGTCTTCTAGTTCATCAGCATGTGTAGCTATTTTTTATAAAAAGTCAAAATTGCTCAAACTATTAATTTTTAGGTGTATTGTAAAACCTTTAATGTATAGCTCGAYAGTAATATCAGCAATTTCATTTCTGAATGAATAGTCAGCTGGTGTTTTCTCTTTTCGGACCGACCATTGCTTAGTGGTCTTGTTGAAGAACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23546</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1598445</contig_pos>
        <strand>+</strand>
        <context>CTCGAYAGTA[A/G]TATCAGCAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTAATTTTTAGGTGTATTGTAAAACCTTTAATGTATAGCTCGACAGTA</left_flank>
        <right_flank>TATCAGCAATTTCATTTCTGAATGAATAGTCAGCTGGTGTTTTCTCTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGTATGAAGATACTCAGTGGGCAGCTTTCGCTTCCTTTCTTGTCTACTTTTTTGGCACTTTTTTCTTTTTCTTCAATCTAGTCTCTTCGATTTCATCTTCCTCTTTCTCGTTTCTCTCTTCTTCCTCATCATCATCCATTTTCCTTCCTTCTCCGTCTTTCATACTGTTGTCGCTGTCTTCTTTTTCCTCCTCATTTTCTTTCTCTTCTTCGTCGAACACCGATTCCTCTTCGTCACTATCGGCCATTCCCAAGTGAGCCCAAATATCGTCGACCTGTAATTTGGATAAGACACATACTGTTAGTTGGAATTTTATATTTACGTCAAATACGTCCTTTGAGAGCTCTTCATCTAACTCATGCTCGTCGCAATCTGAGCCTTCATCTTCGTCTTCTAGTTCATCAGCATGTGTAGCTATTTTTTATAAAAAGTCAAAATTGCTCAAACTATTAATTTTTAGGTGTATTGTAAAACCTTTAATGTATAGCTCGACAGTAATATCAGCAATTTCATTTCTGAATGAATAGTCAGCTGGTGTTTTCTCTTTTCGGACCGACCATTGCTTAGTGGTCTTGTTGAAGAACCTTTTCTCAGCAATTACAACGCGTTTTCCGTTGAGCTCATCTAGCTGTTTGCTATTCCAATCCAACACTGCGAGCTGTGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCCTGGAAAATTAAGATCATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGCTCTCGCGTTGAAGGACTCGACTGCGCTCGTAGCGAAATACGGGGATACTCTTCCGATTGCCTCACAACGGTCCCCTTTCTCAATGACAGCTAAGAGAGCATTCAGAGCTTTGACGTGCAGGGGATTTTTGGTATCCAGAAAATCTGGTCTTTTTCTGTTGACGTCATCCGATTCATTGTGCTCGCAAGAGTTCACTATTTTGAAGTCATACCAACCAGAATCCTAAAAAGTTTGTT</canonical>
            <polymorphic>CGAGTATGAAGATACTCAGTGGGCAGCTTTCGCTTCCTTTCTTGTCTACTTTTTTGGCACTTTTTTCTTTTTCTTCAATCTAGTCTCTTCGATTTCATCTTCCTCTTTCTCGTTTCTCTCTTCTTCCTCATCATCATCCATTTTCCTTCCTTCTCCGTCTTTCATACTGTTGTCGCTGTCTTCTTTTTCCTCCTCATTTTCTTTCTCTTCTTCGTCGAACACCGATTCCTCTTCGTCACTATCGGCCATTCCCAAGTGAGCCCAAATATCGTCGACCTGTAATTTGGATAAGACACATACTGTTAGTTGGAATTTTATATTTACGTCAAATACGTCCTTTGAGAGCTCTTCATCTAACTCATGCTCGTCGCAATCTGAGCCTTCATCTTCGTCTTCTAGTTCATCAGCATGTGTAGCTATTTTTTATAAAAAGTCAAAATTGCTCAAACTATTAATTTTTAGGTGTATTGTAAAACCTTTAATGTATAGCTCGACAGTARTATCAGCAATTTCATTTCTGAATGAATAGTCAGCTGGTGTTTTCTCTTTTCGGACCGACCATTGCTTAGTGGTCTTGTTGAAGAACCTTTTCTCAGCAATTACAACGCGTTTTCCGTTGAGCTCATCTAGCTGTTTGCTATTCCAATCCAACACTGCGAGCTGTGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCCTGGAAAATTAAGATCATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGCTCTCGCGTTGAAGGACTCGACTGCGCTCGTAGCGAAATACGGGGATACTCTTCCGATTGCCTCACAACGGTCCCCTTTCTCAATGACAGCTAAGAGAGCATTCAGAGCTTTGACGTGCAGGGGATTTTTGGTATCCAGAAAATCTGGTCTTTTTCTGTTGACGTCATCCGATTCATTGTGCTCGCAAGAGTTCACTATTTTGAAGTCATACCAACCAGAATCCTAAAAAGTTTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGAGCTCTTCATCTAACTCAT</pcr_primer_p1>
		<pcr_primer_p2>AGGTTCTTCAACAAGACCACTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAGAGCTCTTCATCTAACTCATGCTCGTCGCAATCTGAGCCTTCATCTTCGTCTTCTAGTTCATCAGCATGTGTAGCTATTTTTTATAAAAAGTCAAAATTGCTCAAACTATTAATTTTTAGGTGTATTGTAAAACCTTTAATGTATAGCTCGACAGTAATATCAGCAATTTCATTTCTGAATGAATAGTCAGCTGGTGTTTTCTCTTTTCGGACCGACCATTGCTTAGTGGTCTTGTTGAAGAACCT</canonical_amplicon>
		<polymorphic_amplicon>TGAGAGCTCTTCATCTAACTCATGCTCGTCGCAATCTGAGCCTTCATCTTCGTCTTCTAGTTCATCAGCATGTGTAGCTATTTTTTATAAAAAGTCAAAATTGCTCAAACTATTAATTTTTAGGTGTATTGTAAAACCTTTAATGTATAGCTCGACAGTARTATCAGCAATTTCATTTCTGAATGAATAGTCAGCTGGTGTTTTCTCTTTTCGGACCGACCATTGCTTAGTGGTCTTGTTGAAGAACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23547</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1598603</contig_pos>
        <strand>+</strand>
        <context>CCAACACTGC[A/G]AGCTGTGTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTTTTCCGTTGAGCTCATCTAGCTGTTTGCTATTCCAATCCAACACTGC</left_flank>
        <right_flank>AGCTGTGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTCATACTGTTGTCGCTGTCTTCTTTTTCCTCCTCATTTTCTTTCTCTTCTTCGTCGAACACCGATTCCTCTTCGTCACTATCGGCCATTCCCAAGTGAGCCCAAATATCGTCGACCTGTAATTTGGATAAGACACATACTGTTAGTTGGAATTTTATATTTACGTCAAATACGTCCTTTGAGAGCTCTTCATCTAACTCATGCTCGTCGCAATCTGAGCCTTCATCTTCGTCTTCTAGTTCATCAGCATGTGTAGCTATTTTTTATAAAAAGTCAAAATTGCTCAAACTATTAATTTTTAGGTGTATTGTAAAACCTTTAATGTATAGCTCGACAGTAATATCAGCAATTTCATTTCTGAATGAATAGTCAGCTGGTGTTTTCTCTTTTCGGACCGACCATTGCTTAGTGGTCTTGTTGAAGAACCTTTTCTCAGCAATTACAACGCGTTTTCCGTTGAGCTCATCTAGCTGTTTGCTATTCCAATCCAACACTGCGAGCTGTGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCCTGGAAAATTAAGATCATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGCTCTCGCGTTGAAGGACTCGACTGCGCTCGTAGCGAAATACGGGGATACTCTTCCGATTGCCTCACAACGGTCCCCTTTCTCAATGACAGCTAAGAGAGCATTCAGAGCTTTGACGTGCAGGGGATTTTTGGTATCCAGAAAATCTGGTCTTTTTCTGTTGACGTCATCCGATTCATTGTGCTCGCAAGAGTTCACTATTTTGAAGTCATACCAACCAGAATCCTAAAAAGTTTGTTTCTAACTTTTCAGAGGCATTACAATTTGAAAACACCTGAAAATCTTTATGAATATCTGCCACATGCATGAAAAAAGACAACAGCTTTTCCTTGGCCATTTCGTCATGTCCACCAGACGACTGAATGGACCAATAAACATGGTTGATGAACCTTCTTAT</canonical>
            <polymorphic>CTTTCATACTGTTGTCGCTGTCTTCTTTTTCCTCCTCATTTTCTTTCTCTTCTTCGTCGAACACCGATTCCTCTTCGTCACTATCGGCCATTCCCAAGTGAGCCCAAATATCGTCGACCTGTAATTTGGATAAGACACATACTGTTAGTTGGAATTTTATATTTACGTCAAATACGTCCTTTGAGAGCTCTTCATCTAACTCATGCTCGTCGCAATCTGAGCCTTCATCTTCGTCTTCTAGTTCATCAGCATGTGTAGCTATTTTTTATAAAAAGTCAAAATTGCTCAAACTATTAATTTTTAGGTGTATTGTAAAACCTTTAATGTATAGCTCGACAGTAATATCAGCAATTTCATTTCTGAATGAATAGTCAGCTGGTGTTTTCTCTTTTCGGACCGACCATTGCTTAGTGGTCTTGTTGAAGAACCTTTTCTCAGCAATTACAACGCGTTTTCCGTTGAGCTCATCTAGCTGTTTGCTATTCCAATCCAACACTGCRAGCTGTGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCCTGGAAAATTAAGATCATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGCTCTCGCGTTGAAGGACTCGACTGCGCTCGTAGCGAAATACGGGGATACTCTTCCGATTGCCTCACAACGGTCCCCTTTCTCAATGACAGCTAAGAGAGCATTCAGAGCTTTGACGTGCAGGGGATTTTTGGTATCCAGAAAATCTGGTCTTTTTCTGTTGACGTCATCCGATTCATTGTGCTCGCAAGAGTTCACTATTTTGAAGTCATACCAACCAGAATCCTAAAAAGTTTGTTTCTAACTTTTCAGAGGCATTACAATTTGAAAACACCTGAAAATCTTTATGAATATCTGCCACATGCATGAAAAAAGACAACAGCTTTTCCTTGGCCATTTCGTCATGTCCACCAGACGACTGAATGGACCAATAAACATGGTTGATGAACCTTCTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTGTTGAAGAACCTTTTCTC</pcr_primer_p1>
		<pcr_primer_p2>GGAAGAGTATCCCCGTATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCTTGTTGAAGAACCTTTTCTCAGCAATTACAACGCGTTTTCCGTTGAGCTCATCTAGCTGTTTGCTATTCCAATCCAACACTGCGAGCTGTGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCCTGGAAAATTAAGATCATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGCTCTCGCGTTGAAGGACTCGACTGCGCTCGTAGCGAAATACGGGGATACTCTTCC</canonical_amplicon>
		<polymorphic_amplicon>TCTTGTTGAAGAACCTTTTCTCAGCAATTACAACGCGTTTTCCGTTGAGCTCATCTAGCTGTTTGCTATTCCAATCCAACACTGCRAGCTGTGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCCTGGAAAATTAAGATCATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGCTCTCGCGTTGAAGGACTCGACTGCGCTCGTAGCGAAATACGGGGATACTCTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23548</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1598653</contig_pos>
        <strand>+</strand>
        <context>ACTATTTTTC[C/T]TGGAAWATTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGCTGTGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTC</left_flank>
        <right_flank>TGGAAAATTAAGATCATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTCGTCGAACACCGATTCCTCTTCGTCACTATCGGCCATTCCCAAGTGAGCCCAAATATCGTCGACCTGTAATTTGGATAAGACACATACTGTTAGTTGGAATTTTATATTTACGTCAAATACGTCCTTTGAGAGCTCTTCATCTAACTCATGCTCGTCGCAATCTGAGCCTTCATCTTCGTCTTCTAGTTCATCAGCATGTGTAGCTATTTTTTATAAAAAGTCAAAATTGCTCAAACTATTAATTTTTAGGTGTATTGTAAAACCTTTAATGTATAGCTCGACAGTAATATCAGCAATTTCATTTCTGAATGAATAGTCAGCTGGTGTTTTCTCTTTTCGGACCGACCATTGCTTAGTGGTCTTGTTGAAGAACCTTTTCTCAGCAATTACAACGCGTTTTCCGTTGAGCTCATCTAGCTGTTTGCTATTCCAATCCAACACTGCGAGCTGTGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCCTGGAAAATTAAGATCATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGCTCTCGCGTTGAAGGACTCGACTGCGCTCGTAGCGAAATACGGGGATACTCTTCCGATTGCCTCACAACGGTCCCCTTTCTCAATGACAGCTAAGAGAGCATTCAGAGCTTTGACGTGCAGGGGATTTTTGGTATCCAGAAAATCTGGTCTTTTTCTGTTGACGTCATCCGATTCATTGTGCTCGCAAGAGTTCACTATTTTGAAGTCATACCAACCAGAATCCTAAAAAGTTTGTTTCTAACTTTTCAGAGGCATTACAATTTGAAAACACCTGAAAATCTTTATGAATATCTGCCACATGCATGAAAAAAGACAACAGCTTTTCCTTGGCCATTTCGTCATGTCCACCAGACGACTGAATGGACCAATAAACATGGTTGATGAACCTTCTTATCCATGGCTTAAGTGGAAGGAACTGCTTTTGATTTTTTTTTTCTAAATTGT</canonical>
            <polymorphic>TCTTCGTCGAACACCGATTCCTCTTCGTCACTATCGGCCATTCCCAAGTGAGCCCAAATATCGTCGACCTGTAATTTGGATAAGACACATACTGTTAGTTGGAATTTTATATTTACGTCAAATACGTCCTTTGAGAGCTCTTCATCTAACTCATGCTCGTCGCAATCTGAGCCTTCATCTTCGTCTTCTAGTTCATCAGCATGTGTAGCTATTTTTTATAAAAAGTCAAAATTGCTCAAACTATTAATTTTTAGGTGTATTGTAAAACCTTTAATGTATAGCTCGACAGTAATATCAGCAATTTCATTTCTGAATGAATAGTCAGCTGGTGTTTTCTCTTTTCGGACCGACCATTGCTTAGTGGTCTTGTTGAAGAACCTTTTCTCAGCAATTACAACGCGTTTTCCGTTGAGCTCATCTAGCTGTTTGCTATTCCAATCCAACACTGCGAGCTGTGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCYTGGAAAATTAAGATCATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGCTCTCGCGTTGAAGGACTCGACTGCGCTCGTAGCGAAATACGGGGATACTCTTCCGATTGCCTCACAACGGTCCCCTTTCTCAATGACAGCTAAGAGAGCATTCAGAGCTTTGACGTGCAGGGGATTTTTGGTATCCAGAAAATCTGGTCTTTTTCTGTTGACGTCATCCGATTCATTGTGCTCGCAAGAGTTCACTATTTTGAAGTCATACCAACCAGAATCCTAAAAAGTTTGTTTCTAACTTTTCAGAGGCATTACAATTTGAAAACACCTGAAAATCTTTATGAATATCTGCCACATGCATGAAAAAAGACAACAGCTTTTCCTTGGCCATTTCGTCATGTCCACCAGACGACTGAATGGACCAATAAACATGGTTGATGAACCTTCTTATCCATGGCTTAAGTGGAAGGAACTGCTTTTGATTTTTTTTTTCTAAATTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCTCATCTAGCTGTTTGCTAT</pcr_primer_p1>
		<pcr_primer_p2>GAATGCTCTCTTAGCTGTCATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGCTCATCTAGCTGTTTGCTATTCCAATCCAACACTGCGAGCTGTGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCCTGGAAAATTAAGATCATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGCTCTCGCGTTGAAGGACTCGACTGCGCTCGTAGCGAAATACGGGGATACTCTTCCGATTGCCTCACAACGGTCCCCTTTCTCAATGACAGCTAAGAGAGCATTC</canonical_amplicon>
		<polymorphic_amplicon>AGCTCATCTAGCTGTTTGCTATTCCAATCCAACACTGCGAGCTGTGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCYTGGAAAATTAAGATCATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGCTCTCGCGTTGAAGGACTCGACTGCGCTCGTAGCGAAATACGGGGATACTCTTCCGATTGCCTCACAACGGTCCCCTTTCTCAATGACAGCTAAGAGAGCATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23549</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1598659</contig_pos>
        <strand>+</strand>
        <context>TTTCYTGGAA[A/T]ATTAAKATYA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCCTGGAA</left_flank>
        <right_flank>ATTAAGATCATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAACACCGATTCCTCTTCGTCACTATCGGCCATTCCCAAGTGAGCCCAAATATCGTCGACCTGTAATTTGGATAAGACACATACTGTTAGTTGGAATTTTATATTTACGTCAAATACGTCCTTTGAGAGCTCTTCATCTAACTCATGCTCGTCGCAATCTGAGCCTTCATCTTCGTCTTCTAGTTCATCAGCATGTGTAGCTATTTTTTATAAAAAGTCAAAATTGCTCAAACTATTAATTTTTAGGTGTATTGTAAAACCTTTAATGTATAGCTCGACAGTAATATCAGCAATTTCATTTCTGAATGAATAGTCAGCTGGTGTTTTCTCTTTTCGGACCGACCATTGCTTAGTGGTCTTGTTGAAGAACCTTTTCTCAGCAATTACAACGCGTTTTCCGTTGAGCTCATCTAGCTGTTTGCTATTCCAATCCAACACTGCGAGCTGTGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCCTGGAAAATTAAGATCATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGCTCTCGCGTTGAAGGACTCGACTGCGCTCGTAGCGAAATACGGGGATACTCTTCCGATTGCCTCACAACGGTCCCCTTTCTCAATGACAGCTAAGAGAGCATTCAGAGCTTTGACGTGCAGGGGATTTTTGGTATCCAGAAAATCTGGTCTTTTTCTGTTGACGTCATCCGATTCATTGTGCTCGCAAGAGTTCACTATTTTGAAGTCATACCAACCAGAATCCTAAAAAGTTTGTTTCTAACTTTTCAGAGGCATTACAATTTGAAAACACCTGAAAATCTTTATGAATATCTGCCACATGCATGAAAAAAGACAACAGCTTTTCCTTGGCCATTTCGTCATGTCCACCAGACGACTGAATGGACCAATAAACATGGTTGATGAACCTTCTTATCCATGGCTTAAGTGGAAGGAACTGCTTTTGATTTTTTTTTTCTAAATTGTTATAAT</canonical>
            <polymorphic>TCGAACACCGATTCCTCTTCGTCACTATCGGCCATTCCCAAGTGAGCCCAAATATCGTCGACCTGTAATTTGGATAAGACACATACTGTTAGTTGGAATTTTATATTTACGTCAAATACGTCCTTTGAGAGCTCTTCATCTAACTCATGCTCGTCGCAATCTGAGCCTTCATCTTCGTCTTCTAGTTCATCAGCATGTGTAGCTATTTTTTATAAAAAGTCAAAATTGCTCAAACTATTAATTTTTAGGTGTATTGTAAAACCTTTAATGTATAGCTCGACAGTAATATCAGCAATTTCATTTCTGAATGAATAGTCAGCTGGTGTTTTCTCTTTTCGGACCGACCATTGCTTAGTGGTCTTGTTGAAGAACCTTTTCTCAGCAATTACAACGCGTTTTCCGTTGAGCTCATCTAGCTGTTTGCTATTCCAATCCAACACTGCGAGCTGTGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCCTGGAAWATTAAGATCATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGCTCTCGCGTTGAAGGACTCGACTGCGCTCGTAGCGAAATACGGGGATACTCTTCCGATTGCCTCACAACGGTCCCCTTTCTCAATGACAGCTAAGAGAGCATTCAGAGCTTTGACGTGCAGGGGATTTTTGGTATCCAGAAAATCTGGTCTTTTTCTGTTGACGTCATCCGATTCATTGTGCTCGCAAGAGTTCACTATTTTGAAGTCATACCAACCAGAATCCTAAAAAGTTTGTTTCTAACTTTTCAGAGGCATTACAATTTGAAAACACCTGAAAATCTTTATGAATATCTGCCACATGCATGAAAAAAGACAACAGCTTTTCCTTGGCCATTTCGTCATGTCCACCAGACGACTGAATGGACCAATAAACATGGTTGATGAACCTTCTTATCCATGGCTTAAGTGGAAGGAACTGCTTTTGATTTTTTTTTTCTAAATTGTTATAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>309 180 127 116 90 66 54 30 16 12</canonical_bands>
                <polymorphic_bands>425 180 127 90 66 54 30 16 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCTCATCTAGCTGTTTGCTAT</pcr_primer_p1>
		<pcr_primer_p2>GAATGCTCTCTTAGCTGTCATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGCTCATCTAGCTGTTTGCTATTCCAATCCAACACTGCGAGCTGTGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCCTGGAAAATTAAGATCATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGCTCTCGCGTTGAAGGACTCGACTGCGCTCGTAGCGAAATACGGGGATACTCTTCCGATTGCCTCACAACGGTCCCCTTTCTCAATGACAGCTAAGAGAGCATTC</canonical_amplicon>
		<polymorphic_amplicon>AGCTCATCTAGCTGTTTGCTATTCCAATCCAACACTGCGAGCTGTGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCCTGGAAWATTAAGATCATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGCTCTCGCGTTGAAGGACTCGACTGCGCTCGTAGCGAAATACGGGGATACTCTTCCGATTGCCTCACAACGGTCCCCTTTCTCAATGACAGCTAAGAGAGCATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23550</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1598665</contig_pos>
        <strand>+</strand>
        <context>GGAAWATTAA[G/T]ATYATGCTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCCTGGAAAATTAA</left_flank>
        <right_flank>ATCATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGCTCTCGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCGATTCCTCTTCGTCACTATCGGCCATTCCCAAGTGAGCCCAAATATCGTCGACCTGTAATTTGGATAAGACACATACTGTTAGTTGGAATTTTATATTTACGTCAAATACGTCCTTTGAGAGCTCTTCATCTAACTCATGCTCGTCGCAATCTGAGCCTTCATCTTCGTCTTCTAGTTCATCAGCATGTGTAGCTATTTTTTATAAAAAGTCAAAATTGCTCAAACTATTAATTTTTAGGTGTATTGTAAAACCTTTAATGTATAGCTCGACAGTAATATCAGCAATTTCATTTCTGAATGAATAGTCAGCTGGTGTTTTCTCTTTTCGGACCGACCATTGCTTAGTGGTCTTGTTGAAGAACCTTTTCTCAGCAATTACAACGCGTTTTCCGTTGAGCTCATCTAGCTGTTTGCTATTCCAATCCAACACTGCGAGCTGTGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCCTGGAAAATTAAGATCATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGCTCTCGCGTTGAAGGACTCGACTGCGCTCGTAGCGAAATACGGGGATACTCTTCCGATTGCCTCACAACGGTCCCCTTTCTCAATGACAGCTAAGAGAGCATTCAGAGCTTTGACGTGCAGGGGATTTTTGGTATCCAGAAAATCTGGTCTTTTTCTGTTGACGTCATCCGATTCATTGTGCTCGCAAGAGTTCACTATTTTGAAGTCATACCAACCAGAATCCTAAAAAGTTTGTTTCTAACTTTTCAGAGGCATTACAATTTGAAAACACCTGAAAATCTTTATGAATATCTGCCACATGCATGAAAAAAGACAACAGCTTTTCCTTGGCCATTTCGTCATGTCCACCAGACGACTGAATGGACCAATAAACATGGTTGATGAACCTTCTTATCCATGGCTTAAGTGGAAGGAACTGCTTTTGATTTTTTTTTTCTAAATTGTTATAATTATTCC</canonical>
            <polymorphic>ACCGATTCCTCTTCGTCACTATCGGCCATTCCCAAGTGAGCCCAAATATCGTCGACCTGTAATTTGGATAAGACACATACTGTTAGTTGGAATTTTATATTTACGTCAAATACGTCCTTTGAGAGCTCTTCATCTAACTCATGCTCGTCGCAATCTGAGCCTTCATCTTCGTCTTCTAGTTCATCAGCATGTGTAGCTATTTTTTATAAAAAGTCAAAATTGCTCAAACTATTAATTTTTAGGTGTATTGTAAAACCTTTAATGTATAGCTCGACAGTAATATCAGCAATTTCATTTCTGAATGAATAGTCAGCTGGTGTTTTCTCTTTTCGGACCGACCATTGCTTAGTGGTCTTGTTGAAGAACCTTTTCTCAGCAATTACAACGCGTTTTCCGTTGAGCTCATCTAGCTGTTTGCTATTCCAATCCAACACTGCGAGCTGTGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCCTGGAAAATTAAKATCATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGCTCTCGCGTTGAAGGACTCGACTGCGCTCGTAGCGAAATACGGGGATACTCTTCCGATTGCCTCACAACGGTCCCCTTTCTCAATGACAGCTAAGAGAGCATTCAGAGCTTTGACGTGCAGGGGATTTTTGGTATCCAGAAAATCTGGTCTTTTTCTGTTGACGTCATCCGATTCATTGTGCTCGCAAGAGTTCACTATTTTGAAGTCATACCAACCAGAATCCTAAAAAGTTTGTTTCTAACTTTTCAGAGGCATTACAATTTGAAAACACCTGAAAATCTTTATGAATATCTGCCACATGCATGAAAAAAGACAACAGCTTTTCCTTGGCCATTTCGTCATGTCCACCAGACGACTGAATGGACCAATAAACATGGTTGATGAACCTTCTTATCCATGGCTTAAGTGGAAGGAACTGCTTTTGATTTTTTTTTTCTAAATTGTTATAATTATTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCTCATCTAGCTGTTTGCTAT</pcr_primer_p1>
		<pcr_primer_p2>GAATGCTCTCTTAGCTGTCATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGCTCATCTAGCTGTTTGCTATTCCAATCCAACACTGCGAGCTGTGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCCTGGAAAATTAAGATCATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGCTCTCGCGTTGAAGGACTCGACTGCGCTCGTAGCGAAATACGGGGATACTCTTCCGATTGCCTCACAACGGTCCCCTTTCTCAATGACAGCTAAGAGAGCATTC</canonical_amplicon>
		<polymorphic_amplicon>AGCTCATCTAGCTGTTTGCTATTCCAATCCAACACTGCGAGCTGTGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCCTGGAAAATTAAKATCATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGCTCTCGCGTTGAAGGACTCGACTGCGCTCGTAGCGAAATACGGGGATACTCTTCCGATTGCCTCACAACGGTCCCCTTTCTCAATGACAGCTAAGAGAGCATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23551</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1598668</contig_pos>
        <strand>+</strand>
        <context>AWATTAAKAT[C/T]ATGCTATACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCCTGGAAAATTAAGAT</left_flank>
        <right_flank>ATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGCTCTCGCGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTCCTCTTCGTCACTATCGGCCATTCCCAAGTGAGCCCAAATATCGTCGACCTGTAATTTGGATAAGACACATACTGTTAGTTGGAATTTTATATTTACGTCAAATACGTCCTTTGAGAGCTCTTCATCTAACTCATGCTCGTCGCAATCTGAGCCTTCATCTTCGTCTTCTAGTTCATCAGCATGTGTAGCTATTTTTTATAAAAAGTCAAAATTGCTCAAACTATTAATTTTTAGGTGTATTGTAAAACCTTTAATGTATAGCTCGACAGTAATATCAGCAATTTCATTTCTGAATGAATAGTCAGCTGGTGTTTTCTCTTTTCGGACCGACCATTGCTTAGTGGTCTTGTTGAAGAACCTTTTCTCAGCAATTACAACGCGTTTTCCGTTGAGCTCATCTAGCTGTTTGCTATTCCAATCCAACACTGCGAGCTGTGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCCTGGAAAATTAAGATCATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGCTCTCGCGTTGAAGGACTCGACTGCGCTCGTAGCGAAATACGGGGATACTCTTCCGATTGCCTCACAACGGTCCCCTTTCTCAATGACAGCTAAGAGAGCATTCAGAGCTTTGACGTGCAGGGGATTTTTGGTATCCAGAAAATCTGGTCTTTTTCTGTTGACGTCATCCGATTCATTGTGCTCGCAAGAGTTCACTATTTTGAAGTCATACCAACCAGAATCCTAAAAAGTTTGTTTCTAACTTTTCAGAGGCATTACAATTTGAAAACACCTGAAAATCTTTATGAATATCTGCCACATGCATGAAAAAAGACAACAGCTTTTCCTTGGCCATTTCGTCATGTCCACCAGACGACTGAATGGACCAATAAACATGGTTGATGAACCTTCTTATCCATGGCTTAAGTGGAAGGAACTGCTTTTGATTTTTTTTTTCTAAATTGTTATAATTATTCCTTC</canonical>
            <polymorphic>GATTCCTCTTCGTCACTATCGGCCATTCCCAAGTGAGCCCAAATATCGTCGACCTGTAATTTGGATAAGACACATACTGTTAGTTGGAATTTTATATTTACGTCAAATACGTCCTTTGAGAGCTCTTCATCTAACTCATGCTCGTCGCAATCTGAGCCTTCATCTTCGTCTTCTAGTTCATCAGCATGTGTAGCTATTTTTTATAAAAAGTCAAAATTGCTCAAACTATTAATTTTTAGGTGTATTGTAAAACCTTTAATGTATAGCTCGACAGTAATATCAGCAATTTCATTTCTGAATGAATAGTCAGCTGGTGTTTTCTCTTTTCGGACCGACCATTGCTTAGTGGTCTTGTTGAAGAACCTTTTCTCAGCAATTACAACGCGTTTTCCGTTGAGCTCATCTAGCTGTTTGCTATTCCAATCCAACACTGCGAGCTGTGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCCTGGAAAATTAAGATYATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGCTCTCGCGTTGAAGGACTCGACTGCGCTCGTAGCGAAATACGGGGATACTCTTCCGATTGCCTCACAACGGTCCCCTTTCTCAATGACAGCTAAGAGAGCATTCAGAGCTTTGACGTGCAGGGGATTTTTGGTATCCAGAAAATCTGGTCTTTTTCTGTTGACGTCATCCGATTCATTGTGCTCGCAAGAGTTCACTATTTTGAAGTCATACCAACCAGAATCCTAAAAAGTTTGTTTCTAACTTTTCAGAGGCATTACAATTTGAAAACACCTGAAAATCTTTATGAATATCTGCCACATGCATGAAAAAAGACAACAGCTTTTCCTTGGCCATTTCGTCATGTCCACCAGACGACTGAATGGACCAATAAACATGGTTGATGAACCTTCTTATCCATGGCTTAAGTGGAAGGAACTGCTTTTGATTTTTTTTTTCTAAATTGTTATAATTATTCCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>339 315 137 63 48 38 33 23 4</canonical_bands>
                <polymorphic_bands>654 137 63 48 38 33 23 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCTCATCTAGCTGTTTGCTAT</pcr_primer_p1>
		<pcr_primer_p2>GAATGCTCTCTTAGCTGTCATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGCTCATCTAGCTGTTTGCTATTCCAATCCAACACTGCGAGCTGTGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCCTGGAAAATTAAGATCATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGCTCTCGCGTTGAAGGACTCGACTGCGCTCGTAGCGAAATACGGGGATACTCTTCCGATTGCCTCACAACGGTCCCCTTTCTCAATGACAGCTAAGAGAGCATTC</canonical_amplicon>
		<polymorphic_amplicon>AGCTCATCTAGCTGTTTGCTATTCCAATCCAACACTGCGAGCTGTGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCCTGGAAAATTAAGATYATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGCTCTCGCGTTGAAGGACTCGACTGCGCTCGTAGCGAAATACGGGGATACTCTTCCGATTGCCTCACAACGGTCCCCTTTCTCAATGACAGCTAAGAGAGCATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23552</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1598827</contig_pos>
        <strand>+</strand>
        <context>CTTTGACGTG[C/T]AGGGGATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGTCCCCTTTCTCAATGACAGCTAAGAGAGCATTCAGAGCTTTGACGTG</left_flank>
        <right_flank>AGGGGATTTTTGGTATCCAGAAAATCTGGTCTTTTTCTGTTGACGTCATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATCTTCGTCTTCTAGTTCATCAGCATGTGTAGCTATTTTTTATAAAAAGTCAAAATTGCTCAAACTATTAATTTTTAGGTGTATTGTAAAACCTTTAATGTATAGCTCGACAGTAATATCAGCAATTTCATTTCTGAATGAATAGTCAGCTGGTGTTTTCTCTTTTCGGACCGACCATTGCTTAGTGGTCTTGTTGAAGAACCTTTTCTCAGCAATTACAACGCGTTTTCCGTTGAGCTCATCTAGCTGTTTGCTATTCCAATCCAACACTGCGAGCTGTGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCCTGGAAAATTAAGATCATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGCTCTCGCGTTGAAGGACTCGACTGCGCTCGTAGCGAAATACGGGGATACTCTTCCGATTGCCTCACAACGGTCCCCTTTCTCAATGACAGCTAAGAGAGCATTCAGAGCTTTGACGTGCAGGGGATTTTTGGTATCCAGAAAATCTGGTCTTTTTCTGTTGACGTCATCCGATTCATTGTGCTCGCAAGAGTTCACTATTTTGAAGTCATACCAACCAGAATCCTAAAAAGTTTGTTTCTAACTTTTCAGAGGCATTACAATTTGAAAACACCTGAAAATCTTTATGAATATCTGCCACATGCATGAAAAAAGACAACAGCTTTTCCTTGGCCATTTCGTCATGTCCACCAGACGACTGAATGGACCAATAAACATGGTTGATGAACCTTCTTATCCATGGCTTAAGTGGAAGGAACTGCTTTTGATTTTTTTTTTCTAAATTGTTATAATTATTCCTTCATGAACATATCTCAAATTGCTACTTTCAAGATTTCCAAAGCTAGACTTCTGATATAGTGCCAGCTGTCGAAGTAGTGGGTGACATCTGGAAAGTTGTTTGCCATCATCGAGGCTACACTTTGACTACGATCTGTGGTGAGCGATTCGATGGCCGAATCA</canonical>
            <polymorphic>TCATCTTCGTCTTCTAGTTCATCAGCATGTGTAGCTATTTTTTATAAAAAGTCAAAATTGCTCAAACTATTAATTTTTAGGTGTATTGTAAAACCTTTAATGTATAGCTCGACAGTAATATCAGCAATTTCATTTCTGAATGAATAGTCAGCTGGTGTTTTCTCTTTTCGGACCGACCATTGCTTAGTGGTCTTGTTGAAGAACCTTTTCTCAGCAATTACAACGCGTTTTCCGTTGAGCTCATCTAGCTGTTTGCTATTCCAATCCAACACTGCGAGCTGTGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCCTGGAAAATTAAGATCATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGCTCTCGCGTTGAAGGACTCGACTGCGCTCGTAGCGAAATACGGGGATACTCTTCCGATTGCCTCACAACGGTCCCCTTTCTCAATGACAGCTAAGAGAGCATTCAGAGCTTTGACGTGYAGGGGATTTTTGGTATCCAGAAAATCTGGTCTTTTTCTGTTGACGTCATCCGATTCATTGTGCTCGCAAGAGTTCACTATTTTGAAGTCATACCAACCAGAATCCTAAAAAGTTTGTTTCTAACTTTTCAGAGGCATTACAATTTGAAAACACCTGAAAATCTTTATGAATATCTGCCACATGCATGAAAAAAGACAACAGCTTTTCCTTGGCCATTTCGTCATGTCCACCAGACGACTGAATGGACCAATAAACATGGTTGATGAACCTTCTTATCCATGGCTTAAGTGGAAGGAACTGCTTTTGATTTTTTTTTTCTAAATTGTTATAATTATTCCTTCATGAACATATCTCAAATTGCTACTTTCAAGATTTCCAAAGCTAGACTTCTGATATAGTGCCAGCTGTCGAAGTAGTGGGTGACATCTGGAAAGTTGTTTGCCATCATCGAGGCTACACTTTGACTACGATCTGTGGTGAGCGATTCGATGGCCGAATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>499 317 184</canonical_bands>
                <polymorphic_bands>683 317</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAAATACGGGGATACTCTT</pcr_primer_p1>
		<pcr_primer_p2>AAGATTTTCAGGTGTTTTCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGAAATACGGGGATACTCTTCCGATTGCCTCACAACGGTCCCCTTTCTCAATGACAGCTAAGAGAGCATTCAGAGCTTTGACGTGCAGGGGATTTTTGGTATCCAGAAAATCTGGTCTTTTTCTGTTGACGTCATCCGATTCATTGTGCTCGCAAGAGTTCACTATTTTGAAGTCATACCAACCAGAATCCTAAAAAGTTTGTTTCTAACTTTTCAGAGGCATTACAATTTGAAAACACCTGAAAATCTT</canonical_amplicon>
		<polymorphic_amplicon>CGAAATACGGGGATACTCTTCCGATTGCCTCACAACGGTCCCCTTTCTCAATGACAGCTAAGAGAGCATTCAGAGCTTTGACGTGYAGGGGATTTTTGGTATCCAGAAAATCTGGTCTTTTTCTGTTGACGTCATCCGATTCATTGTGCTCGCAAGAGTTCACTATTTTGAAGTCATACCAACCAGAATCCTAAAAAGTTTGTTTCTAACTTTTCAGAGGCATTACAATTTGAAAACACCTGAAAATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23553</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1598966</contig_pos>
        <strand>+</strand>
        <context>CAGAGGCATT[A/T]CAATTTGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATACCAACCAGAATCCTAAAAAGTTTGTTTCTAACTTTTCAGAGGCATT</left_flank>
        <right_flank>CAATTTGAAAACACCTGAAAATCTTTATGAATATCTGCCACATGCATGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAATAGTCAGCTGGTGTTTTCTCTTTTCGGACCGACCATTGCTTAGTGGTCTTGTTGAAGAACCTTTTCTCAGCAATTACAACGCGTTTTCCGTTGAGCTCATCTAGCTGTTTGCTATTCCAATCCAACACTGCGAGCTGTGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCCTGGAAAATTAAGATCATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGCTCTCGCGTTGAAGGACTCGACTGCGCTCGTAGCGAAATACGGGGATACTCTTCCGATTGCCTCACAACGGTCCCCTTTCTCAATGACAGCTAAGAGAGCATTCAGAGCTTTGACGTGCAGGGGATTTTTGGTATCCAGAAAATCTGGTCTTTTTCTGTTGACGTCATCCGATTCATTGTGCTCGCAAGAGTTCACTATTTTGAAGTCATACCAACCAGAATCCTAAAAAGTTTGTTTCTAACTTTTCAGAGGCATTACAATTTGAAAACACCTGAAAATCTTTATGAATATCTGCCACATGCATGAAAAAAGACAACAGCTTTTCCTTGGCCATTTCGTCATGTCCACCAGACGACTGAATGGACCAATAAACATGGTTGATGAACCTTCTTATCCATGGCTTAAGTGGAAGGAACTGCTTTTGATTTTTTTTTTCTAAATTGTTATAATTATTCCTTCATGAACATATCTCAAATTGCTACTTTCAAGATTTCCAAAGCTAGACTTCTGATATAGTGCCAGCTGTCGAAGTAGTGGGTGACATCTGGAAAGTTGTTTGCCATCATCGAGGCTACACTTTGACTACGATCTGTGGTGAGCGATTCGATGGCCGAATCATAAGTAACCATCAAATTTTCGAAAGCTTTCTCGCATGCCTCTGTTTCTATATTCACTTTCTTCTCTGAAATCTTCTAAATTTGGAATTTGTTTATTCCGTATATCAACCTCCAGACTTGTGACGAAAAATCTCATATTC</canonical>
            <polymorphic>ATGAATAGTCAGCTGGTGTTTTCTCTTTTCGGACCGACCATTGCTTAGTGGTCTTGTTGAAGAACCTTTTCTCAGCAATTACAACGCGTTTTCCGTTGAGCTCATCTAGCTGTTTGCTATTCCAATCCAACACTGCGAGCTGTGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCCTGGAAAATTAAGATCATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGCTCTCGCGTTGAAGGACTCGACTGCGCTCGTAGCGAAATACGGGGATACTCTTCCGATTGCCTCACAACGGTCCCCTTTCTCAATGACAGCTAAGAGAGCATTCAGAGCTTTGACGTGCAGGGGATTTTTGGTATCCAGAAAATCTGGTCTTTTTCTGTTGACGTCATCCGATTCATTGTGCTCGCAAGAGTTCACTATTTTGAAGTCATACCAACCAGAATCCTAAAAAGTTTGTTTCTAACTTTTCAGAGGCATTWCAATTTGAAAACACCTGAAAATCTTTATGAATATCTGCCACATGCATGAAAAAAGACAACAGCTTTTCCTTGGCCATTTCGTCATGTCCACCAGACGACTGAATGGACCAATAAACATGGTTGATGAACCTTCTTATCCATGGCTTAAGTGGAAGGAACTGCTTTTGATTTTTTTTTTCTAAATTGTTATAATTATTCCTTCATGAACATATCTCAAATTGCTACTTTCAAGATTTCCAAAGCTAGACTTCTGATATAGTGCCAGCTGTCGAAGTAGTGGGTGACATCTGGAAAGTTGTTTGCCATCATCGAGGCTACACTTTGACTACGATCTGTGGTGAGCGATTCGATGGCCGAATCATAAGTAACCATCAAATTTTCGAAAGCTTTCTCGCATGCCTCTGTTTCTATATTCACTTTCTTCTCTGAAATCTTCTAAATTTGGAATTTGTTTATTCCGTATATCAACCTCCAGACTTGTGACGAAAAATCTCATATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATCCAGAAAATCTGGTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTTTATTGGTCCATTCAGTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GTATCCAGAAAATCTGGTCTTTTTCTGTTGACGTCATCCGATTCATTGTGCTCGCAAGAGTTCACTATTTTGAAGTCATACCAACCAGAATCCTAAAAAGTTTGTTTCTAACTTTTCAGAGGCATTACAATTTGAAAACACCTGAAAATCTTTATGAATATCTGCCACATGCATGAAAAAAGACAACAGCTTTTCCTTGGCCATTTCGTCATGTCCACCAGACGACTGAATGGACCAATAAACAT</canonical_amplicon>
		<polymorphic_amplicon>GTATCCAGAAAATCTGGTCTTTTTCTGTTGACGTCATCCGATTCATTGTGCTCGCAAGAGTTCACTATTTTGAAGTCATACCAACCAGAATCCTAAAAAGTTTGTTTCTAACTTTTCAGAGGCATTWCAATTTGAAAACACCTGAAAATCTTTATGAATATCTGCCACATGCATGAAAAAAGACAACAGCTTTTCCTTGGCCATTTCGTCATGTCCACCAGACGACTGAATGGACCAATAAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23554</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1599008</contig_pos>
        <strand>+</strand>
        <context>TATCTGCCAC[A/G]TGCATGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGGCATTACAATTTGAAAACACCTGAAAATCTTTATGAATATCTGCCAC</left_flank>
        <right_flank>TGCATGAAAAAAGACAACAGCTTTTCCTTGGCCATTTCGTCATGTCCACC</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTTAGTGGTCTTGTTGAAGAACCTTTTCTCAGCAATTACAACGCGTTTTCCGTTGAGCTCATCTAGCTGTTTGCTATTCCAATCCAACACTGCGAGCTGTGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCCTGGAAAATTAAGATCATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGCTCTCGCGTTGAAGGACTCGACTGCGCTCGTAGCGAAATACGGGGATACTCTTCCGATTGCCTCACAACGGTCCCCTTTCTCAATGACAGCTAAGAGAGCATTCAGAGCTTTGACGTGCAGGGGATTTTTGGTATCCAGAAAATCTGGTCTTTTTCTGTTGACGTCATCCGATTCATTGTGCTCGCAAGAGTTCACTATTTTGAAGTCATACCAACCAGAATCCTAAAAAGTTTGTTTCTAACTTTTCAGAGGCATTACAATTTGAAAACACCTGAAAATCTTTATGAATATCTGCCACATGCATGAAAAAAGACAACAGCTTTTCCTTGGCCATTTCGTCATGTCCACCAGACGACTGAATGGACCAATAAACATGGTTGATGAACCTTCTTATCCATGGCTTAAGTGGAAGGAACTGCTTTTGATTTTTTTTTTCTAAATTGTTATAATTATTCCTTCATGAACATATCTCAAATTGCTACTTTCAAGATTTCCAAAGCTAGACTTCTGATATAGTGCCAGCTGTCGAAGTAGTGGGTGACATCTGGAAAGTTGTTTGCCATCATCGAGGCTACACTTTGACTACGATCTGTGGTGAGCGATTCGATGGCCGAATCATAAGTAACCATCAAATTTTCGAAAGCTTTCTCGCATGCCTCTGTTTCTATATTCACTTTCTTCTCTGAAATCTTCTAAATTTGGAATTTGTTTATTCCGTATATCAACCTCCAGACTTGTGACGAAAAATCTCATATTCCACAACAAGTTTCGTAACTGCCTCCATTATGACATAACGGCA</canonical>
            <polymorphic>GCTTAGTGGTCTTGTTGAAGAACCTTTTCTCAGCAATTACAACGCGTTTTCCGTTGAGCTCATCTAGCTGTTTGCTATTCCAATCCAACACTGCGAGCTGTGTTCTACTGTTGAACCCCTTTTGAGAGCTGAAAACTATTTTTCCTGGAAAATTAAGATCATGCTATACTAGAATCTTTTTTTGCTTGCGTAGAAACCAGCTCTCGCGTTGAAGGACTCGACTGCGCTCGTAGCGAAATACGGGGATACTCTTCCGATTGCCTCACAACGGTCCCCTTTCTCAATGACAGCTAAGAGAGCATTCAGAGCTTTGACGTGCAGGGGATTTTTGGTATCCAGAAAATCTGGTCTTTTTCTGTTGACGTCATCCGATTCATTGTGCTCGCAAGAGTTCACTATTTTGAAGTCATACCAACCAGAATCCTAAAAAGTTTGTTTCTAACTTTTCAGAGGCATTACAATTTGAAAACACCTGAAAATCTTTATGAATATCTGCCACRTGCATGAAAAAAGACAACAGCTTTTCCTTGGCCATTTCGTCATGTCCACCAGACGACTGAATGGACCAATAAACATGGTTGATGAACCTTCTTATCCATGGCTTAAGTGGAAGGAACTGCTTTTGATTTTTTTTTTCTAAATTGTTATAATTATTCCTTCATGAACATATCTCAAATTGCTACTTTCAAGATTTCCAAAGCTAGACTTCTGATATAGTGCCAGCTGTCGAAGTAGTGGGTGACATCTGGAAAGTTGTTTGCCATCATCGAGGCTACACTTTGACTACGATCTGTGGTGAGCGATTCGATGGCCGAATCATAAGTAACCATCAAATTTTCGAAAGCTTTCTCGCATGCCTCTGTTTCTATATTCACTTTCTTCTCTGAAATCTTCTAAATTTGGAATTTGTTTATTCCGTATATCAACCTCCAGACTTGTGACGAAAAATCTCATATTCCACAACAAGTTTCGTAACTGCCTCCATTATGACATAACGGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATGCAT</site>
                <isoschizomers>
                    <enzyme>BfrBI</enzyme>
                    <enzyme>EcoT22I</enzyme>
                    <enzyme>Mph1103I</enzyme>
                    <enzyme>NsiI</enzyme>
                    <enzyme>Ppu10I</enzyme>
                    <enzyme>Zsp2I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>502 354 144</canonical_bands>
                <polymorphic_bands>856 144</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>339 193 160 147 63 38 33 23 4</canonical_bands>
                <polymorphic_bands>343 193 160 147 63 38 33 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATCCAGAAAATCTGGTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTTTATTGGTCCATTCAGTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GTATCCAGAAAATCTGGTCTTTTTCTGTTGACGTCATCCGATTCATTGTGCTCGCAAGAGTTCACTATTTTGAAGTCATACCAACCAGAATCCTAAAAAGTTTGTTTCTAACTTTTCAGAGGCATTACAATTTGAAAACACCTGAAAATCTTTATGAATATCTGCCACATGCATGAAAAAAGACAACAGCTTTTCCTTGGCCATTTCGTCATGTCCACCAGACGACTGAATGGACCAATAAACAT</canonical_amplicon>
		<polymorphic_amplicon>GTATCCAGAAAATCTGGTCTTTTTCTGTTGACGTCATCCGATTCATTGTGCTCGCAAGAGTTCACTATTTTGAAGTCATACCAACCAGAATCCTAAAAAGTTTGTTTCTAACTTTTCAGAGGCATTACAATTTGAAAACACCTGAAAATCTTTATGAATATCTGCCACRTGCATGAAAAAAGACAACAGCTTTTCCTTGGCCATTTCGTCATGTCCACCAGACGACTGAATGGACCAATAAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23555</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1645674</contig_pos>
        <strand></strand>
        <context>TCTAATAGTA[T/A]CCcaactttg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATTGTTTGCATTCCTGATGTTCTACAGTTACTGTGCTTCCTCTAATAGTA</left_flank>
        <right_flank>CCCAACTTTGATCTCAATTATCTTGTTTCCTGTGAAAATTTTCGAACATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACATGCATCGTCTACACTCCCTTTCGTTGGGTCATTGGAACCAATCTGAAACATGTTAAGAACGCCAACACTTCTCAGCTACAGAATACGGTATTTCTTATGAAATCTTGTGTAAAATATACAACTTTTTTCAGAAAACCCAAGTATTCCTTCAGTCCACTCTGATATGTGCTGCCAATCAAGTTTGTGCTGTCATCTACGTCGTCATGAATGTAACTGAAGTTCCCGACTGGATCATAATTTTTGCTCATTTCACTTGGGAATTCATCCACGGAGCTCCGGTTTTCATTTATCTCGCATTGAACCGAATGATTCGAGAACGGTTTCTGGAAAAGATGAATGTGATGAAGGGAGGAGCGTTTCGAGAGACCACCTCGATGATGCCGATCAACAAGAGTGGAGCATCTCCTGTTGTCATTGTTAATTGAAACGTTTTCTTACTTTTACAATTGTTTGCATTCCTGATGTTCTACAGTTACTGTGCTTCCTCTAATAGTATCCCAACTTTGATCTCAATTATCTTGTTTCCTGTGAAAATTTTCGAACATTTGTCAACTAATGAACTATTTATCATAACATCATCAAAATTTTATGAGTTGACAAATTTTTCATATCTTTCACAAGAATCGAGATAATTGAAAAACGGTTTTGTATGGGCTTCTACTAGAGGAACTGCGGTAACACTATTTTGACCGAACCGTGAAAACACTCTCAAAATCATAATTTCTTCAAATACACACCAAAATCGACCTCAACTACCCGATCTGTATCTCTGAACGAAACTGAAACTGATAAACTGATTTTTATATTAACTTGATCATTCCTGTGATCAGCTGGGTTTAATTATGGCATTGGTGAGAACAAGGCTATTCAATTATTTTCTCTCCCAACCCATCATGATCATTGGTTTCAAAGACCTTTAAAAGTCAACATGCCACACCTTTTCTGTATTATGATAAATTTGCAATTTAATCATATTCCTCCATTCACCATTTGATC</canonical>
            <polymorphic>CACATGCATCGTCTACACTCCCTTTCGTTGGGTCATTGGAACCAATCTGAAACATGTTAAGAACGCCAACACTTCTCAGCTACAGAATACGGTATTTCTTATGAAATCTTGTGTAAAATATACAACTTTTTTCAGAAAACCCAAGTATTCCTTCAGTCCACTCTGATATGTGCTGCCAATCAAGTTTGTGCTGTCATCTACGTCGTCATGAATGTAACTGAAGTTCCCGACTGGATCATAATTTTTGCTCATTTCACTTGGGAATTCATCCACGGAGCTCCGGTTTTCATTTATCTCGCATTGAACCGAATGATTCGAGAACGGTTTCTGGAAAAGATGAATGTGATGAAGGGAGGAGCGTTTCGAGAGACCACCTCGATGATGCCGATCAACAAGAGTGGAGCATCTCCTGTTGTCATTGTTAATTGAAACGTTTTCTTACTTTTACAATTGTTTGCATTCCTGATGTTCTACAGTTACTGTGCTTCCTCTAATAGTAWCCCAACTTTGATCTCAATTATCTTGTTTCCTGTGAAAATTTTCGAACATTTGTCAACTAATGAACTATTTATCATAACATCATCAAAATTTTATGAGTTGACAAATTTTTCATATCTTTCACAAGAATCGAGATAATTGAAAAACGGTTTTGTATGGGCTTCTACTAGAGGAACTGCGGTAACACTATTTTGACCGAACCGTGAAAACACTCTCAAAATCATAATTTCTTCAAATACACACCAAAATCGACCTCAACTACCCGATCTGTATCTCTGAACGAAACTGAAACTGATAAACTGATTTTTATATTAACTTGATCATTCCTGTGATCAGCTGGGTTTAATTATGGCATTGGTGAGAACAAGGCTATTCAATTATTTTCTCTCCCAACCCATCATGATCATTGGTTTCAAAGACCTTTAAAAGTCAACATGCCACACCTTTTCTGTATTATGATAAATTTGCAATTTAATCATATTCCTCCATTCACCATTTGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTAATTGAAACGTTTTCTTACT</pcr_primer_p1>
		<pcr_primer_p2>TCTAGTAGAAGCCCATACAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTTAATTGAAACGTTTTCTTACTTTTACAATTGTTTGCATTCCTGATGTTCTACAGTTACTGTGCTTCCTCTAATAGTATCCCAACTTTGATCTCAATTATCTTGTTTCCTGTGAAAATTTTCGAACATTTGTCAACTAATGAACTATTTATCATAACATCATCAAAATTTTATGAGTTGACAAATTTTTCATATCTTTCACAAGAATCGAGATAATTGAAAAACGGTTTTGTATGGGCTTCTACTAGA</canonical_amplicon>
		<polymorphic_amplicon>TGTTAATTGAAACGTTTTCTTACTTTTACAATTGTTTGCATTCCTGATGTTCTACAGTTACTGTGCTTCCTCTAATAGTAWCCCAACTTTGATCTCAATTATCTTGTTTCCTGTGAAAATTTTCGAACATTTGTCAACTAATGAACTATTTATCATAACATCATCAAAATTTTATGAGTTGACAAATTTTTCATATCTTTCACAAGAATCGAGATAATTGAAAAACGGTTTTGTATGGGCTTCTACTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23556</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1645721</contig_pos>
        <strand></strand>
        <context>aattttcgaa[C/A]atttgtcaac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GTATCCCAACTTTGATCTCAATTATCTTGTTTCCTGTGAAAATTTTCGAA</left_flank>
        <right_flank>ATTTGTCAACTAATGAACTATTTATCATAACATCATCAAAATTTTATGAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAACATGTTAAGAACGCCAACACTTCTCAGCTACAGAATACGGTATTTCTTATGAAATCTTGTGTAAAATATACAACTTTTTTCAGAAAACCCAAGTATTCCTTCAGTCCACTCTGATATGTGCTGCCAATCAAGTTTGTGCTGTCATCTACGTCGTCATGAATGTAACTGAAGTTCCCGACTGGATCATAATTTTTGCTCATTTCACTTGGGAATTCATCCACGGAGCTCCGGTTTTCATTTATCTCGCATTGAACCGAATGATTCGAGAACGGTTTCTGGAAAAGATGAATGTGATGAAGGGAGGAGCGTTTCGAGAGACCACCTCGATGATGCCGATCAACAAGAGTGGAGCATCTCCTGTTGTCATTGTTAATTGAAACGTTTTCTTACTTTTACAATTGTTTGCATTCCTGATGTTCTACAGTTACTGTGCTTCCTCTAATAGTATCCCAACTTTGATCTCAATTATCTTGTTTCCTGTGAAAATTTTCGAACATTTGTCAACTAATGAACTATTTATCATAACATCATCAAAATTTTATGAGTTGACAAATTTTTCATATCTTTCACAAGAATCGAGATAATTGAAAAACGGTTTTGTATGGGCTTCTACTAGAGGAACTGCGGTAACACTATTTTGACCGAACCGTGAAAACACTCTCAAAATCATAATTTCTTCAAATACACACCAAAATCGACCTCAACTACCCGATCTGTATCTCTGAACGAAACTGAAACTGATAAACTGATTTTTATATTAACTTGATCATTCCTGTGATCAGCTGGGTTTAATTATGGCATTGGTGAGAACAAGGCTATTCAATTATTTTCTCTCCCAACCCATCATGATCATTGGTTTCAAAGACCTTTAAAAGTCAACATGCCACACCTTTTCTGTATTATGATAAATTTGCAATTTAATCATATTCCTCCATTCACCATTTGATCTGTACTCATTTCCATGTAAATTCCACCTCAACTCATTCTCTCCCAAA</canonical>
            <polymorphic>TGAAACATGTTAAGAACGCCAACACTTCTCAGCTACAGAATACGGTATTTCTTATGAAATCTTGTGTAAAATATACAACTTTTTTCAGAAAACCCAAGTATTCCTTCAGTCCACTCTGATATGTGCTGCCAATCAAGTTTGTGCTGTCATCTACGTCGTCATGAATGTAACTGAAGTTCCCGACTGGATCATAATTTTTGCTCATTTCACTTGGGAATTCATCCACGGAGCTCCGGTTTTCATTTATCTCGCATTGAACCGAATGATTCGAGAACGGTTTCTGGAAAAGATGAATGTGATGAAGGGAGGAGCGTTTCGAGAGACCACCTCGATGATGCCGATCAACAAGAGTGGAGCATCTCCTGTTGTCATTGTTAATTGAAACGTTTTCTTACTTTTACAATTGTTTGCATTCCTGATGTTCTACAGTTACTGTGCTTCCTCTAATAGTATCCCAACTTTGATCTCAATTATCTTGTTTCCTGTGAAAATTTTCGAAMATTTGTCAACTAATGAACTATTTATCATAACATCATCAAAATTTTATGAGTTGACAAATTTTTCATATCTTTCACAAGAATCGAGATAATTGAAAAACGGTTTTGTATGGGCTTCTACTAGAGGAACTGCGGTAACACTATTTTGACCGAACCGTGAAAACACTCTCAAAATCATAATTTCTTCAAATACACACCAAAATCGACCTCAACTACCCGATCTGTATCTCTGAACGAAACTGAAACTGATAAACTGATTTTTATATTAACTTGATCATTCCTGTGATCAGCTGGGTTTAATTATGGCATTGGTGAGAACAAGGCTATTCAATTATTTTCTCTCCCAACCCATCATGATCATTGGTTTCAAAGACCTTTAAAAGTCAACATGCCACACCTTTTCTGTATTATGATAAATTTGCAATTTAATCATATTCCTCCATTCACCATTTGATCTGTACTCATTTCCATGTAAATTCCACCTCAACTCATTCTCTCCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTAATTGAAACGTTTTCTTACT</pcr_primer_p1>
		<pcr_primer_p2>TCTAGTAGAAGCCCATACAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTTAATTGAAACGTTTTCTTACTTTTACAATTGTTTGCATTCCTGATGTTCTACAGTTACTGTGCTTCCTCTAATAGTATCCCAACTTTGATCTCAATTATCTTGTTTCCTGTGAAAATTTTCGAACATTTGTCAACTAATGAACTATTTATCATAACATCATCAAAATTTTATGAGTTGACAAATTTTTCATATCTTTCACAAGAATCGAGATAATTGAAAAACGGTTTTGTATGGGCTTCTACTAGA</canonical_amplicon>
		<polymorphic_amplicon>TGTTAATTGAAACGTTTTCTTACTTTTACAATTGTTTGCATTCCTGATGTTCTACAGTTACTGTGCTTCCTCTAATAGTATCCCAACTTTGATCTCAATTATCTTGTTTCCTGTGAAAATTTTCGAAMATTTGTCAACTAATGAACTATTTATCATAACATCATCAAAATTTTATGAGTTGACAAATTTTTCATATCTTTCACAAGAATCGAGATAATTGAAAAACGGTTTTGTATGGGCTTCTACTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23557</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1679911</contig_pos>
        <strand>+</strand>
        <context>gtttggttgc[G/T]cttctattag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTTTCACAGGATACTAGATAATTGAACTTCAAGTTGACAGTTTGGTTGC</left_flank>
        <right_flank>CTTCTATTAGAGGAAACATGGACATTATATGTATTAAAACTATACGTACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGTTAAACTCCACAGTGTAACAAGCCGCGACTTTAGCAGAGTTGTGAAGGCACTGTAAAGCCCATCCTGTTTTGCAATCTTCCATGTTACAGTACAAATAGGATAAGGAGTCACAGTGGGGAGCATTTCGATTGAAACAGCAGTCACACTGAAATTCAAATGTCTAATAAGTTCAAAAGTTAAAAATCTCACATCTTTGGATCCAGCCATCCATCGGTTCCTCGAAATCGCTGGCTTATCGGATGTGATGAGATTCAGAAAGACTTGGAAACGACCGCGCTGAAAATGTTAAAAAATATTGCAAACTGAAAATCTTCAGCCCACCCATACAGTCAACTTTGAGCTCAACTATCTAGATTCCTGTGAGAGATACAAACAATTGGTCAACTGATAAAATAATTATCATATTATGGTTAATATTTTATCAATTGAAAAACTTTAATAATATCTTTCACAGGATACTAGATAATTGAACTTCAAGTTGACAGTTTGGTTGCGCTTCTATTAGAGGAAACATGGACATTATATGTATTAAAACTATACGTACTCCTTTATTCAATCGTTTTTTGATCTCATCATCGATTCCTTGAGCTTTGCTTCTGATAAGACCCTCTAGATGGGAACGACTAGGAAGTTGGATTGTTCTACGGAAATCGTATTCATTGGCTTCGATATTATAGCATTTCGATACAGGAGTGTCGTTTTCAGATCGAGACAAAAACTGAAAATTATTTGAATAAACTTCAGACCCCGAGAAAAAAAATCTCACCTGATGTCTGCCAGCGGCTAATTCGTTTTCCACTGCTTGTGAGACTTGACAAAGATCACAATATCTACAGTACGTCCTTCCGTTTCTCTCGATCACTCCACTAAATTCATCGCATTTCTGACTAAGAAGCGTAGTTTCCGGAATCATTGTGTACGGTAGATCGAATCGGATACCAGCAGGACCTTCCAAAACAGGAACTTGAAGAGTTATTCCGATTTCTCCGGCTAGG</canonical>
            <polymorphic>ATAGTTAAACTCCACAGTGTAACAAGCCGCGACTTTAGCAGAGTTGTGAAGGCACTGTAAAGCCCATCCTGTTTTGCAATCTTCCATGTTACAGTACAAATAGGATAAGGAGTCACAGTGGGGAGCATTTCGATTGAAACAGCAGTCACACTGAAATTCAAATGTCTAATAAGTTCAAAAGTTAAAAATCTCACATCTTTGGATCCAGCCATCCATCGGTTCCTCGAAATCGCTGGCTTATCGGATGTGATGAGATTCAGAAAGACTTGGAAACGACCGCGCTGAAAATGTTAAAAAATATTGCAAACTGAAAATCTTCAGCCCACCCATACAGTCAACTTTGAGCTCAACTATCTAGATTCCTGTGAGAGATACAAACAATTGGTCAACTGATAAAATAATTATCATATTATGGTTAATATTTTATCAATTGAAAAACTTTAATAATATCTTTCACAGGATACTAGATAATTGAACTTCAAGTTGACAGTTTGGTTGCKCTTCTATTAGAGGAAACATGGACATTATATGTATTAAAACTATACGTACTCCTTTATTCAATCGTTTTTTGATCTCATCATCGATTCCTTGAGCTTTGCTTCTGATAAGACCCTCTAGATGGGAACGACTAGGAAGTTGGATTGTTCTACGGAAATCGTATTCATTGGCTTCGATATTATAGCATTTCGATACAGGAGTGTCGTTTTCAGATCGAGACAAAAACTGAAAATTATTTGAATAAACTTCAGACCCCGAGAAAAAAAATCTCACCTGATGTCTGCCAGCGGCTAATTCGTTTTCCACTGCTTGTGAGACTTGACAAAGATCACAATATCTACAGTACGTCCTTCCGTTTCTCTCGATCACTCCACTAAATTCATCGCATTTCTGACTAAGAAGCGTAGTTTCCGGAATCATTGTGTACGGTAGATCGAATCGGATACCAGCAGGACCTTCCAAAACAGGAACTTGAAGAGTTATTCCGATTTCTCCGGCTAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 281 219</canonical_bands>
                <polymorphic_bands>719 281</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATATTGCAAACTGAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AACGATTGAATAAAGGAGTACG</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>AAAAATATTGCAAACTGAAAATCTTCAGCCCACCCATACAGTCAACTTTGAGCTCAACTATCTAGATTCCTGTGAGAGATACAAACAATTGGTCAACTGATAAAATAATTATCATATTATGGTTAATATTTTATCAATTGAAAAACTTTAATAATATCTTTCACAGGATACTAGATAATTGAACTTCAAGTTGACAGTTTGGTTGCGCTTCTATTAGAGGAAACATGGACATTATATGTATTAAAACTATACGTACTCCTTTATTCAATCGTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATATTGCAAACTGAAAATCTTCAGCCCACCCATACAGTCAACTTTGAGCTCAACTATCTAGATTCCTGTGAGAGATACAAACAATTGGTCAACTGATAAAATAATTATCATATTATGGTTAATATTTTATCAATTGAAAAACTTTAATAATATCTTTCACAGGATACTAGATAATTGAACTTCAAGTTGACAGTTTGGTTGCKCTTCTATTAGAGGAAACATGGACATTATATGTATTAAAACTATACGTACTCCTTTATTCAATCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23558</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1679930</contig_pos>
        <strand></strand>
        <context>agaggAAACA[T/G]GKACATTATA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TAATTGAACTTCAAGTTGACAGTTTGGTTGCGCTTCTATTAGAGGAAACA</left_flank>
        <right_flank>GGACATTATATGTATTAAAACTATACGTACTCCTTTATTCAATCGTTTTT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACAAGCCGCGACTTTAGCAGAGTTGTGAAGGCACTGTAAAGCCCATCCTGTTTTGCAATCTTCCATGTTACAGTACAAATAGGATAAGGAGTCACAGTGGGGAGCATTTCGATTGAAACAGCAGTCACACTGAAATTCAAATGTCTAATAAGTTCAAAAGTTAAAAATCTCACATCTTTGGATCCAGCCATCCATCGGTTCCTCGAAATCGCTGGCTTATCGGATGTGATGAGATTCAGAAAGACTTGGAAACGACCGCGCTGAAAATGTTAAAAAATATTGCAAACTGAAAATCTTCAGCCCACCCATACAGTCAACTTTGAGCTCAACTATCTAGATTCCTGTGAGAGATACAAACAATTGGTCAACTGATAAAATAATTATCATATTATGGTTAATATTTTATCAATTGAAAAACTTTAATAATATCTTTCACAGGATACTAGATAATTGAACTTCAAGTTGACAGTTTGGTTGCGCTTCTATTAGAGGAAACATGGACATTATATGTATTAAAACTATACGTACTCCTTTATTCAATCGTTTTTTGATCTCATCATCGATTCCTTGAGCTTTGCTTCTGATAAGACCCTCTAGATGGGAACGACTAGGAAGTTGGATTGTTCTACGGAAATCGTATTCATTGGCTTCGATATTATAGCATTTCGATACAGGAGTGTCGTTTTCAGATCGAGACAAAAACTGAAAATTATTTGAATAAACTTCAGACCCCGAGAAAAAAAATCTCACCTGATGTCTGCCAGCGGCTAATTCGTTTTCCACTGCTTGTGAGACTTGACAAAGATCACAATATCTACAGTACGTCCTTCCGTTTCTCTCGATCACTCCACTAAATTCATCGCATTTCTGACTAAGAAGCGTAGTTTCCGGAATCATTGTGTACGGTAGATCGAATCGGATACCAGCAGGACCTTCCAAAACAGGAACTTGAAGAGTTATTCCGATTTCTCCGGCTAGGAATCCAAAGTTTTGTTTCA</canonical>
            <polymorphic>TAACAAGCCGCGACTTTAGCAGAGTTGTGAAGGCACTGTAAAGCCCATCCTGTTTTGCAATCTTCCATGTTACAGTACAAATAGGATAAGGAGTCACAGTGGGGAGCATTTCGATTGAAACAGCAGTCACACTGAAATTCAAATGTCTAATAAGTTCAAAAGTTAAAAATCTCACATCTTTGGATCCAGCCATCCATCGGTTCCTCGAAATCGCTGGCTTATCGGATGTGATGAGATTCAGAAAGACTTGGAAACGACCGCGCTGAAAATGTTAAAAAATATTGCAAACTGAAAATCTTCAGCCCACCCATACAGTCAACTTTGAGCTCAACTATCTAGATTCCTGTGAGAGATACAAACAATTGGTCAACTGATAAAATAATTATCATATTATGGTTAATATTTTATCAATTGAAAAACTTTAATAATATCTTTCACAGGATACTAGATAATTGAACTTCAAGTTGACAGTTTGGTTGCGCTTCTATTAGAGGAAACAKGGACATTATATGTATTAAAACTATACGTACTCCTTTATTCAATCGTTTTTTGATCTCATCATCGATTCCTTGAGCTTTGCTTCTGATAAGACCCTCTAGATGGGAACGACTAGGAAGTTGGATTGTTCTACGGAAATCGTATTCATTGGCTTCGATATTATAGCATTTCGATACAGGAGTGTCGTTTTCAGATCGAGACAAAAACTGAAAATTATTTGAATAAACTTCAGACCCCGAGAAAAAAAATCTCACCTGATGTCTGCCAGCGGCTAATTCGTTTTCCACTGCTTGTGAGACTTGACAAAGATCACAATATCTACAGTACGTCCTTCCGTTTCTCTCGATCACTCCACTAAATTCATCGCATTTCTGACTAAGAAGCGTAGTTTCCGGAATCATTGTGTACGGTAGATCGAATCGGATACCAGCAGGACCTTCCAAAACAGGAACTTGAAGAGTTATTCCGATTTCTCCGGCTAGGAATCCAAAGTTTTGTTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 432 66</canonical_bands>
                <polymorphic_bands>934 66</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATATTGCAAACTGAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AATCGATGATGAGATCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>293</pcr_amplicon_size>
		<canonical_amplicon>AAAAATATTGCAAACTGAAAATCTTCAGCCCACCCATACAGTCAACTTTGAGCTCAACTATCTAGATTCCTGTGAGAGATACAAACAATTGGTCAACTGATAAAATAATTATCATATTATGGTTAATATTTTATCAATTGAAAAACTTTAATAATATCTTTCACAGGATACTAGATAATTGAACTTCAAGTTGACAGTTTGGTTGCGCTTCTATTAGAGGAAACATGGACATTATATGTATTAAAACTATACGTACTCCTTTATTCAATCGTTTTTTGATCTCATCATCGATT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATATTGCAAACTGAAAATCTTCAGCCCACCCATACAGTCAACTTTGAGCTCAACTATCTAGATTCCTGTGAGAGATACAAACAATTGGTCAACTGATAAAATAATTATCATATTATGGTTAATATTTTATCAATTGAAAAACTTTAATAATATCTTTCACAGGATACTAGATAATTGAACTTCAAGTTGACAGTTTGGTTGCGCTTCTATTAGAGGAAACAKGGACATTATATGTATTAAAACTATACGTACTCCTTTATTCAATCGTTTTTTGATCTCATCATCGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23559</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1679932</contig_pos>
        <strand></strand>
        <context>aggAAACAKG[G/T]ACATTATATG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTGAACTTCAAGTTGACAGTTTGGTTGCGCTTCTATTAGAGGAAACATG</left_flank>
        <right_flank>ACATTATATGTATTAAAACTATACGTACTCCTTTATTCAATCGTTTTTTG</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAGCCGCGACTTTAGCAGAGTTGTGAAGGCACTGTAAAGCCCATCCTGTTTTGCAATCTTCCATGTTACAGTACAAATAGGATAAGGAGTCACAGTGGGGAGCATTTCGATTGAAACAGCAGTCACACTGAAATTCAAATGTCTAATAAGTTCAAAAGTTAAAAATCTCACATCTTTGGATCCAGCCATCCATCGGTTCCTCGAAATCGCTGGCTTATCGGATGTGATGAGATTCAGAAAGACTTGGAAACGACCGCGCTGAAAATGTTAAAAAATATTGCAAACTGAAAATCTTCAGCCCACCCATACAGTCAACTTTGAGCTCAACTATCTAGATTCCTGTGAGAGATACAAACAATTGGTCAACTGATAAAATAATTATCATATTATGGTTAATATTTTATCAATTGAAAAACTTTAATAATATCTTTCACAGGATACTAGATAATTGAACTTCAAGTTGACAGTTTGGTTGCGCTTCTATTAGAGGAAACATGGACATTATATGTATTAAAACTATACGTACTCCTTTATTCAATCGTTTTTTGATCTCATCATCGATTCCTTGAGCTTTGCTTCTGATAAGACCCTCTAGATGGGAACGACTAGGAAGTTGGATTGTTCTACGGAAATCGTATTCATTGGCTTCGATATTATAGCATTTCGATACAGGAGTGTCGTTTTCAGATCGAGACAAAAACTGAAAATTATTTGAATAAACTTCAGACCCCGAGAAAAAAAATCTCACCTGATGTCTGCCAGCGGCTAATTCGTTTTCCACTGCTTGTGAGACTTGACAAAGATCACAATATCTACAGTACGTCCTTCCGTTTCTCTCGATCACTCCACTAAATTCATCGCATTTCTGACTAAGAAGCGTAGTTTCCGGAATCATTGTGTACGGTAGATCGAATCGGATACCAGCAGGACCTTCCAAAACAGGAACTTGAAGAGTTATTCCGATTTCTCCGGCTAGGAATCCAAAGTTTTGTTTCACT</canonical>
            <polymorphic>ACAAGCCGCGACTTTAGCAGAGTTGTGAAGGCACTGTAAAGCCCATCCTGTTTTGCAATCTTCCATGTTACAGTACAAATAGGATAAGGAGTCACAGTGGGGAGCATTTCGATTGAAACAGCAGTCACACTGAAATTCAAATGTCTAATAAGTTCAAAAGTTAAAAATCTCACATCTTTGGATCCAGCCATCCATCGGTTCCTCGAAATCGCTGGCTTATCGGATGTGATGAGATTCAGAAAGACTTGGAAACGACCGCGCTGAAAATGTTAAAAAATATTGCAAACTGAAAATCTTCAGCCCACCCATACAGTCAACTTTGAGCTCAACTATCTAGATTCCTGTGAGAGATACAAACAATTGGTCAACTGATAAAATAATTATCATATTATGGTTAATATTTTATCAATTGAAAAACTTTAATAATATCTTTCACAGGATACTAGATAATTGAACTTCAAGTTGACAGTTTGGTTGCGCTTCTATTAGAGGAAACATGKACATTATATGTATTAAAACTATACGTACTCCTTTATTCAATCGTTTTTTGATCTCATCATCGATTCCTTGAGCTTTGCTTCTGATAAGACCCTCTAGATGGGAACGACTAGGAAGTTGGATTGTTCTACGGAAATCGTATTCATTGGCTTCGATATTATAGCATTTCGATACAGGAGTGTCGTTTTCAGATCGAGACAAAAACTGAAAATTATTTGAATAAACTTCAGACCCCGAGAAAAAAAATCTCACCTGATGTCTGCCAGCGGCTAATTCGTTTTCCACTGCTTGTGAGACTTGACAAAGATCACAATATCTACAGTACGTCCTTCCGTTTCTCTCGATCACTCCACTAAATTCATCGCATTTCTGACTAAGAAGCGTAGTTTCCGGAATCATTGTGTACGGTAGATCGAATCGGATACCAGCAGGACCTTCCAAAACAGGAACTTGAAGAGTTATTCCGATTTCTCCGGCTAGGAATCCAAAGTTTTGTTTCACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATATTGCAAACTGAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AATCGATGATGAGATCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>293</pcr_amplicon_size>
		<canonical_amplicon>AAAAATATTGCAAACTGAAAATCTTCAGCCCACCCATACAGTCAACTTTGAGCTCAACTATCTAGATTCCTGTGAGAGATACAAACAATTGGTCAACTGATAAAATAATTATCATATTATGGTTAATATTTTATCAATTGAAAAACTTTAATAATATCTTTCACAGGATACTAGATAATTGAACTTCAAGTTGACAGTTTGGTTGCGCTTCTATTAGAGGAAACATGGACATTATATGTATTAAAACTATACGTACTCCTTTATTCAATCGTTTTTTGATCTCATCATCGATT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATATTGCAAACTGAAAATCTTCAGCCCACCCATACAGTCAACTTTGAGCTCAACTATCTAGATTCCTGTGAGAGATACAAACAATTGGTCAACTGATAAAATAATTATCATATTATGGTTAATATTTTATCAATTGAAAAACTTTAATAATATCTTTCACAGGATACTAGATAATTGAACTTCAAGTTGACAGTTTGGTTGCGCTTCTATTAGAGGAAACATGKACATTATATGTATTAAAACTATACGTACTCCTTTATTCAATCGTTTTTTGATCTCATCATCGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23560</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1680763</contig_pos>
        <strand>+</strand>
        <context>CACAAATAAA[C/T]CAACTGCGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACAAAGTTGAATAGAAAATTAAGTCCACTAAACAAACTCACAAATAAA</left_flank>
        <right_flank>CAACTGCGATGCCTATAACTCCCTTGGAATATGTGATGTCTGAAATAATA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTCTCTCGATCACTCCACTAAATTCATCGCATTTCTGACTAAGAAGCGTAGTTTCCGGAATCATTGTGTACGGTAGATCGAATCGGATACCAGCAGGACCTTCCAAAACAGGAACTTGAAGAGTTATTCCGATTTCTCCGGCTAGGAATCCAAAGTTTTGTTTCACTTTTATCTTTTTGAAATCTAAGGAATAATTTCCAGGAGCCCGTATGTAGTAGACTCGGTTCCCCCGCTCATTCACAATCTGAACGTCTTCTTCGTTGATTGTGATCTCGTTTTTTACTGAAAATCCAAGATAAGATTTTTGGAGATTACTGGACAGCTTACCTCCTCGACAGTTGTATAAACTAACTTCATCGATAAGAATATAAAGTTCATCATGGGCGAATACATGAACGATACTGGCAAGAAGAAGCCATATTGTTTTCATTATATAAATTAAATCTGAAACAAAGTTGAATAGAAAATTAAGTCCACTAAACAAACTCACAAATAAATCAACTGCGATGCCTATAACTCCCTTGGAATATGTGATGTCTGAAATAATAACTTTCTACAATATAGCAATAACAATATAAGCTGTAAGCCGACAACCGAAATGAAATGAAAATTCGAAAGAGAGAACGGACACGGCACAGTGCGTCTAGTACGCTGCGGCAGGGGAAAGGTTTGAGTGTTGCGGTAAAAGTGAAATCGGAACATTCGACAACCGAATTGCATAATCGGCCATCACGACGACAGGATCCTATGCTTGTGTGGCAATGGCTTCGCAGGTCTTTGTGACCAGTTTGAGGATAATTTCGAGTGGTCGGAGGAAAGGTTTTAAAGAGAGTGTGTGTTGGTTACTTTGTATGCTTCGTTTAAAAGTGTTCAAAGAACCAAAAAAGTGGAAAGAACTGAATATATTCCAAAATGGATTGTTCAGCGAATTGTTAGTCATGATATCGTATCAAGGGGATTCATCTAAAAACTAGAAGGAATTGGAACATTATCCATCC</canonical>
            <polymorphic>GTTTCTCTCGATCACTCCACTAAATTCATCGCATTTCTGACTAAGAAGCGTAGTTTCCGGAATCATTGTGTACGGTAGATCGAATCGGATACCAGCAGGACCTTCCAAAACAGGAACTTGAAGAGTTATTCCGATTTCTCCGGCTAGGAATCCAAAGTTTTGTTTCACTTTTATCTTTTTGAAATCTAAGGAATAATTTCCAGGAGCCCGTATGTAGTAGACTCGGTTCCCCCGCTCATTCACAATCTGAACGTCTTCTTCGTTGATTGTGATCTCGTTTTTTACTGAAAATCCAAGATAAGATTTTTGGAGATTACTGGACAGCTTACCTCCTCGACAGTTGTATAAACTAACTTCATCGATAAGAATATAAAGTTCATCATGGGCGAATACATGAACGATACTGGCAAGAAGAAGCCATATTGTTTTCATTATATAAATTAAATCTGAAACAAAGTTGAATAGAAAATTAAGTCCACTAAACAAACTCACAAATAAAYCAACTGCGATGCCTATAACTCCCTTGGAATATGTGATGTCTGAAATAATAACTTTCTACAATATAGCAATAACAATATAAGCTGTAAGCCGACAACCGAAATGAAATGAAAATTCGAAAGAGAGAACGGACACGGCACAGTGCGTCTAGTACGCTGCGGCAGGGGAAAGGTTTGAGTGTTGCGGTAAAAGTGAAATCGGAACATTCGACAACCGAATTGCATAATCGGCCATCACGACGACAGGATCCTATGCTTGTGTGGCAATGGCTTCGCAGGTCTTTGTGACCAGTTTGAGGATAATTTCGAGTGGTCGGAGGAAAGGTTTTAAAGAGAGTGTGTGTTGGTTACTTTGTATGCTTCGTTTAAAAGTGTTCAAAGAACCAAAAAAGTGGAAAGAACTGAATATATTCCAAAATGGATTGTTCAGCGAATTGTTAGTCATGATATCGTATCAAGGGGATTCATCTAAAAACTAGAAGGAATTGGAACATTATCCATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGAATACATGAACGATACTG</pcr_primer_p1>
		<pcr_primer_p2>GTTCTCTCTTTCGAATTTTCATT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GCGAATACATGAACGATACTGGCAAGAAGAAGCCATATTGTTTTCATTATATAAATTAAATCTGAAACAAAGTTGAATAGAAAATTAAGTCCACTAAACAAACTCACAAATAAATCAACTGCGATGCCTATAACTCCCTTGGAATATGTGATGTCTGAAATAATAACTTTCTACAATATAGCAATAACAATATAAGCTGTAAGCCGACAACCGAAATGAAATGAAAATTCGAAAGAGAGAAC</canonical_amplicon>
		<polymorphic_amplicon>GCGAATACATGAACGATACTGGCAAGAAGAAGCCATATTGTTTTCATTATATAAATTAAATCTGAAACAAAGTTGAATAGAAAATTAAGTCCACTAAACAAACTCACAAATAAAYCAACTGCGATGCCTATAACTCCCTTGGAATATGTGATGTCTGAAATAATAACTTTCTACAATATAGCAATAACAATATAAGCTGTAAGCCGACAACCGAAATGAAATGAAAATTCGAAAGAGAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23561</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1691334</contig_pos>
        <strand>+</strand>
        <context>TTTCAAAAAA[A/G]GCCCATGATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTGATAGAGTGTCAAACCTTCCCAGATTGTTCACTTCCTTTTCAAAAAA</left_flank>
        <right_flank>GCCCATGATGATCTCGCATGGGGATCATCGTCAGATCCGGAATCGTGGTG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGCTTCCCCGGAAACCGCTTAGCCATATATTTCAGAGAAATATGACGATTGGAAGGAAATGGAAAAGCTCTTGGAATGTTCGGAGAGAGATGTTCAAATAGTAAATGATTAGTTCGGATTTGGTGGTCTGGGAGTCTGGAAAGAACAACTATTTGGTCTTACTTTTGGTTCTGCTACGTCAGATATACGTAACTGATACTGTAGGAGCGCATAGAGCATTTTTAATTAGGAGTAAATTGATTAGTTGTTCCCAAGATTACTGTAGTTCGTGTATTGAAGCTGAATGCGATACTCTGTATTCAAGTATGATGGAAAATTGGCTCAGCTTGGTTCAATTTCATTAGAAAAGTTACTTTTTACAAACTGTGACTAGGTCAATGCCGCAAAATGTCCAGATCATGACCGACTAGTCCCGGATTACTGTACACCAGACTGCATGTTCTCGTTCACTGATAGAGTGTCAAACCTTCCCAGATTGTTCACTTCCTTTTCAAAAAAAGCCCATGATGATCTCGCATGGGGATCATCGTCAGATCCGGAATCGTGGTGCCTACTGAAAAGACCAAAAAGGAGAAGGATAAGTGCCCTTTCGCTAAGAAGTGACGTCTCAAAAACCTTATGAAGTCTCACGGTAAGACCTTGAGACTGTCTAGCTTCTTCTTTGTCTTCTTTTCCATTTTTTGAAGCCGACTGTACGTTCCTCATCGCCTTATCTCCTATCTCAAAAACCTTGATTCCTTCGCTTCAAACAGGTAGGCGAAAAACTCATCAATTTTATCATACGTTCCTTCTTCTTCTCTTCTCAAATCGAAAATAACGAAGAGGGCAACAAATTAGGATAGTGTAACAAAAATAGAGTTCTTCAGAAGGAGAGGAATTGAAAATTACAACACCGTCTTTTTTGGGTTCTGATTCTCATGGAGGCCATCTTTTGCGCAGTGTAAAACCACAAAGGTTCTTGTCTACGTTTAGACTTGATGCATCAAAAAAGTGCACTTT</canonical>
            <polymorphic>TAGCTTCCCCGGAAACCGCTTAGCCATATATTTCAGAGAAATATGACGATTGGAAGGAAATGGAAAAGCTCTTGGAATGTTCGGAGAGAGATGTTCAAATAGTAAATGATTAGTTCGGATTTGGTGGTCTGGGAGTCTGGAAAGAACAACTATTTGGTCTTACTTTTGGTTCTGCTACGTCAGATATACGTAACTGATACTGTAGGAGCGCATAGAGCATTTTTAATTAGGAGTAAATTGATTAGTTGTTCCCAAGATTACTGTAGTTCGTGTATTGAAGCTGAATGCGATACTCTGTATTCAAGTATGATGGAAAATTGGCTCAGCTTGGTTCAATTTCATTAGAAAAGTTACTTTTTACAAACTGTGACTAGGTCAATGCCGCAAAATGTCCAGATCATGACCGACTAGTCCCGGATTACTGTACACCAGACTGCATGTTCTCGTTCACTGATAGAGTGTCAAACCTTCCCAGATTGTTCACTTCCTTTTCAAAAAARGCCCATGATGATCTCGCATGGGGATCATCGTCAGATCCGGAATCGTGGTGCCTACTGAAAAGACCAAAAAGGAGAAGGATAAGTGCCCTTTCGCTAAGAAGTGACGTCTCAAAAACCTTATGAAGTCTCACGGTAAGACCTTGAGACTGTCTAGCTTCTTCTTTGTCTTCTTTTCCATTTTTTGAAGCCGACTGTACGTTCCTCATCGCCTTATCTCCTATCTCAAAAACCTTGATTCCTTCGCTTCAAACAGGTAGGCGAAAAACTCATCAATTTTATCATACGTTCCTTCTTCTTCTCTTCTCAAATCGAAAATAACGAAGAGGGCAACAAATTAGGATAGTGTAACAAAAATAGAGTTCTTCAGAAGGAGAGGAATTGAAAATTACAACACCGTCTTTTTTGGGTTCTGATTCTCATGGAGGCCATCTTTTGCGCAGTGTAAAACCACAAAGGTTCTTGTCTACGTTTAGACTTGATGCATCAAAAAAGTGCACTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>238 212 175 153 75 45 41 33 20 5 3</canonical_bands>
                <polymorphic_bands>328 238 212 75 45 41 33 20 5 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTGGTTCAATTTCATTAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTCCTTTTTGGTCTTTTCAGTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTTGGTTCAATTTCATTAGAAAAGTTACTTTTTACAAACTGTGACTAGGTCAATGCCGCAAAATGTCCAGATCATGACCGACTAGTCCCGGATTACTGTACACCAGACTGCATGTTCTCGTTCACTGATAGAGTGTCAAACCTTCCCAGATTGTTCACTTCCTTTTCAAAAAAAGCCCATGATGATCTCGCATGGGGATCATCGTCAGATCCGGAATCGTGGTGCCTACTGAAAAGACCAAAAAGGAG</canonical_amplicon>
		<polymorphic_amplicon>CTTGGTTCAATTTCATTAGAAAAGTTACTTTTTACAAACTGTGACTAGGTCAATGCCGCAAAATGTCCAGATCATGACCGACTAGTCCCGGATTACTGTACACCAGACTGCATGTTCTCGTTCACTGATAGAGTGTCAAACCTTCCCAGATTGTTCACTTCCTTTTCAAAAAARGCCCATGATGATCTCGCATGGGGATCATCGTCAGATCCGGAATCGTGGTGCCTACTGAAAAGACCAAAAAGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23562</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1691484</contig_pos>
        <strand>+</strand>
        <context>CTTGAGACTG[G/T]CTAGCTTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGTGACGTCTCAAAAACCTTATGAAGTCTCACGGTAAGACCTTGAGACTG</left_flank>
        <right_flank>CTAGCTTCTTCTTTGTCTTCTTTTCCATTTTTTGAAGCCGACTGTACGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTGGTCTTACTTTTGGTTCTGCTACGTCAGATATACGTAACTGATACTGTAGGAGCGCATAGAGCATTTTTAATTAGGAGTAAATTGATTAGTTGTTCCCAAGATTACTGTAGTTCGTGTATTGAAGCTGAATGCGATACTCTGTATTCAAGTATGATGGAAAATTGGCTCAGCTTGGTTCAATTTCATTAGAAAAGTTACTTTTTACAAACTGTGACTAGGTCAATGCCGCAAAATGTCCAGATCATGACCGACTAGTCCCGGATTACTGTACACCAGACTGCATGTTCTCGTTCACTGATAGAGTGTCAAACCTTCCCAGATTGTTCACTTCCTTTTCAAAAAAAGCCCATGATGATCTCGCATGGGGATCATCGTCAGATCCGGAATCGTGGTGCCTACTGAAAAGACCAAAAAGGAGAAGGATAAGTGCCCTTTCGCTAAGAAGTGACGTCTCAAAAACCTTATGAAGTCTCACGGTAAGACCTTGAGACTGTCTAGCTTCTTCTTTGTCTTCTTTTCCATTTTTTGAAGCCGACTGTACGTTCCTCATCGCCTTATCTCCTATCTCAAAAACCTTGATTCCTTCGCTTCAAACAGGTAGGCGAAAAACTCATCAATTTTATCATACGTTCCTTCTTCTTCTCTTCTCAAATCGAAAATAACGAAGAGGGCAACAAATTAGGATAGTGTAACAAAAATAGAGTTCTTCAGAAGGAGAGGAATTGAAAATTACAACACCGTCTTTTTTGGGTTCTGATTCTCATGGAGGCCATCTTTTGCGCAGTGTAAAACCACAAAGGTTCTTGTCTACGTTTAGACTTGATGCATCAAAAAAGTGCACTTTTGTCATTTTTTTGATGGAAGGACAAGACAGTCTCCTCACTGGGCGGCCGTCAAAATCCGCTTGAAACAGAAGATGAACTTTTGCAAGAAGACGGAGATGAAGGAAAGGACATCTCATCTTTCGGTGACATCGCACTTTTGAAGCGTCTAG</canonical>
            <polymorphic>TATTTGGTCTTACTTTTGGTTCTGCTACGTCAGATATACGTAACTGATACTGTAGGAGCGCATAGAGCATTTTTAATTAGGAGTAAATTGATTAGTTGTTCCCAAGATTACTGTAGTTCGTGTATTGAAGCTGAATGCGATACTCTGTATTCAAGTATGATGGAAAATTGGCTCAGCTTGGTTCAATTTCATTAGAAAAGTTACTTTTTACAAACTGTGACTAGGTCAATGCCGCAAAATGTCCAGATCATGACCGACTAGTCCCGGATTACTGTACACCAGACTGCATGTTCTCGTTCACTGATAGAGTGTCAAACCTTCCCAGATTGTTCACTTCCTTTTCAAAAAAAGCCCATGATGATCTCGCATGGGGATCATCGTCAGATCCGGAATCGTGGTGCCTACTGAAAAGACCAAAAAGGAGAAGGATAAGTGCCCTTTCGCTAAGAAGTGACGTCTCAAAAACCTTATGAAGTCTCACGGTAAGACCTTGAGACTGKCTAGCTTCTTCTTTGTCTTCTTTTCCATTTTTTGAAGCCGACTGTACGTTCCTCATCGCCTTATCTCCTATCTCAAAAACCTTGATTCCTTCGCTTCAAACAGGTAGGCGAAAAACTCATCAATTTTATCATACGTTCCTTCTTCTTCTCTTCTCAAATCGAAAATAACGAAGAGGGCAACAAATTAGGATAGTGTAACAAAAATAGAGTTCTTCAGAAGGAGAGGAATTGAAAATTACAACACCGTCTTTTTTGGGTTCTGATTCTCATGGAGGCCATCTTTTGCGCAGTGTAAAACCACAAAGGTTCTTGTCTACGTTTAGACTTGATGCATCAAAAAAGTGCACTTTTGTCATTTTTTTGATGGAAGGACAAGACAGTCTCCTCACTGGGCGGCCGTCAAAATCCGCTTGAAACAGAAGATGAACTTTTGCAAGAAGACGGAGATGAAGGAAAGGACATCTCATCTTTCGGTGACATCGCACTTTTGAAGCGTCTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>209 202 134 121 104 61 57 51 45 16</canonical_bands>
                <polymorphic_bands>209 202 134 121 104 61 61 57 51</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACTGAAAAGACCAAAAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>GAAGAGAAGAAGAAGGAACGTAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TACTGAAAAGACCAAAAAGGAGAAGGATAAGTGCCCTTTCGCTAAGAAGTGACGTCTCAAAAACCTTATGAAGTCTCACGGTAAGACCTTGAGACTGTCTAGCTTCTTCTTTGTCTTCTTTTCCATTTTTTGAAGCCGACTGTACGTTCCTCATCGCCTTATCTCCTATCTCAAAAACCTTGATTCCTTCGCTTCAAACAGGTAGGCGAAAAACTCATCAATTTTATCATACGTTCCTTCTTCTTCTCTTC</canonical_amplicon>
		<polymorphic_amplicon>TACTGAAAAGACCAAAAAGGAGAAGGATAAGTGCCCTTTCGCTAAGAAGTGACGTCTCAAAAACCTTATGAAGTCTCACGGTAAGACCTTGAGACTGKCTAGCTTCTTCTTTGTCTTCTTTTCCATTTTTTGAAGCCGACTGTACGTTCCTCATCGCCTTATCTCCTATCTCAAAAACCTTGATTCCTTCGCTTCAAACAGGTAGGCGAAAAACTCATCAATTTTATCATACGTTCCTTCTTCTTCTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23563</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1693093</contig_pos>
        <strand>+</strand>
        <context>AGCCAGTTTT[A/G]CTATTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTACGTTTAGCGGGAGAAGGAGGTCTAAAGAGCTCCACTAGCCAGTTTT</left_flank>
        <right_flank>CTATTTTTTGTGTGTCCATTACTAGCTTGATGACTTTTGTATGCACTAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTTCATTGGTACTGTGAGTTCCTCATAACATAAGGAAATCTGAAACGTTGTCCTCAGCTTGTCCGGCTGTCATTTCTTAGGGTGTGACACTCAATTAGAGAAGAAGCAAAGACGAATTTGCACTTGTCACGATAGAATTATACAGTGGTGGCCTCAATTCACGCAAAAGTGCAACATCGCTCATCAATGTGTCCTCAACATCATTAAATTGGATCTATTCGAAAATCTATCGACACCTCCAAGACGTTGAAAAAAAGAGGCCACGAATTGTTTATAGAGAAAAGAGCCTGGGAAAGAAGCTAGAATGTTTATTTGCTTTTGGGGGTTGAACATACAAGCAAAGAAGGAGCACGGGAGCTCTGAAAGGAAGAAAGAGCTAAAAGCTGAAAATACTGGGCGGCGGTTGTTGTTGACAATTTCAGTGTGTGTTTGTTTTTGTACTCATTTTTACGTTTAGCGGGAGAAGGAGGTCTAAAGAGCTCCACTAGCCAGTTTTTCTATTTTTTGTGTGTCCATTACTAGCTTGATGACTTTTGTATGCACTAACTGGAACATGAAATACCAGTTTTTTAGAGACCATATTTTTTAGAAAATAGTTTAAGAGGAACGTTCCTCGAGGTTCTTGAGCTTGATTAAATTTACCTAATGCTTTTTTCCGGGACCGGTTTGTTTTTAATTTTTAGAATAAGAAAACTAGAAAATGTTTATCTAGCTTTTGGTGGACTATATTTGATGAGCTGTAAAAAGACAAGTTTCGATTTATGGACTGTATTCTTGAGTAGGTCATTTTTCCCTATAACTTTTCTTCTTATATTCTCGATTCAGACGTTTCCTTACAGTACTACGTTCATCGAACTAGGTCAATTGAATTCACATGTCCTTTGAGCTCTTGTTCAAAACACGTATTCCTGTTCTTTATCTATGCCAGAGAACTGAACGAGTTGTCTCTGTCGTGTCGTCTGCCCTATTCAGAAGGACCTTCTCAGAATCGTAGCGT</canonical>
            <polymorphic>AAAGTTCATTGGTACTGTGAGTTCCTCATAACATAAGGAAATCTGAAACGTTGTCCTCAGCTTGTCCGGCTGTCATTTCTTAGGGTGTGACACTCAATTAGAGAAGAAGCAAAGACGAATTTGCACTTGTCACGATAGAATTATACAGTGGTGGCCTCAATTCACGCAAAAGTGCAACATCGCTCATCAATGTGTCCTCAACATCATTAAATTGGATCTATTCGAAAATCTATCGACACCTCCAAGACGTTGAAAAAAAGAGGCCACGAATTGTTTATAGAGAAAAGAGCCTGGGAAAGAAGCTAGAATGTTTATTTGCTTTTGGGGGTTGAACATACAAGCAAAGAAGGAGCACGGGAGCTCTGAAAGGAAGAAAGAGCTAAAAGCTGAAAATACTGGGCGGCGGTTGTTGTTGACAATTTCAGTGTGTGTTTGTTTTTGTACTCATTTTTACGTTTAGCGGGAGAAGGAGGTCTAAAGAGCTCCACTAGCCAGTTTTRCTATTTTTTGTGTGTCCATTACTAGCTTGATGACTTTTGTATGCACTAACTGGAACATGAAATACCAGTTTTTTAGAGACCATATTTTTTAGAAAATAGTTTAAGAGGAACGTTCCTCGAGGTTCTTGAGCTTGATTAAATTTACCTAATGCTTTTTTCCGGGACCGGTTTGTTTTTAATTTTTAGAATAAGAAAACTAGAAAATGTTTATCTAGCTTTTGGTGGACTATATTTGATGAGCTGTAAAAAGACAAGTTTCGATTTATGGACTGTATTCTTGAGTAGGTCATTTTTCCCTATAACTTTTCTTCTTATATTCTCGATTCAGACGTTTCCTTACAGTACTACGTTCATCGAACTAGGTCAATTGAATTCACATGTCCTTTGAGCTCTTGTTCAAAACACGTATTCCTGTTCTTTATCTATGCCAGAGAACTGAACGAGTTGTCTCTGTCGTGTCGTCTGCCCTATTCAGAAGGACCTTCTCAGAATCGTAGCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTGAACATACAAGCAAAGA</pcr_primer_p1>
		<pcr_primer_p2>ACTGGTATTTCATGTTCCAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GGTTGAACATACAAGCAAAGAAGGAGCACGGGAGCTCTGAAAGGAAGAAAGAGCTAAAAGCTGAAAATACTGGGCGGCGGTTGTTGTTGACAATTTCAGTGTGTGTTTGTTTTTGTACTCATTTTTACGTTTAGCGGGAGAAGGAGGTCTAAAGAGCTCCACTAGCCAGTTTTTCTATTTTTTGTGTGTCCATTACTAGCTTGATGACTTTTGTATGCACTAACTGGAACATGAAATACCAGT</canonical_amplicon>
		<polymorphic_amplicon>GGTTGAACATACAAGCAAAGAAGGAGCACGGGAGCTCTGAAAGGAAGAAAGAGCTAAAAGCTGAAAATACTGGGCGGCGGTTGTTGTTGACAATTTCAGTGTGTGTTTGTTTTTGTACTCATTTTTACGTTTAGCGGGAGAAGGAGGTCTAAAGAGCTCCACTAGCCAGTTTTRCTATTTTTTGTGTGTCCATTACTAGCTTGATGACTTTTGTATGCACTAACTGGAACATGAAATACCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23564</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1693167</contig_pos>
        <strand>+</strand>
        <context>ACCAGTTTTT[C/T]AGAGACCATA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCTTGATGACTTTTGTATGCACTAACTGGAACATGAAATACCAGTTTTT</left_flank>
        <right_flank>AGAGACCATATTTTTTAGAAAATAGTTTAAGAGGAACGTTCCTCGAGGTT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCTTAGGGTGTGACACTCAATTAGAGAAGAAGCAAAGACGAATTTGCACTTGTCACGATAGAATTATACAGTGGTGGCCTCAATTCACGCAAAAGTGCAACATCGCTCATCAATGTGTCCTCAACATCATTAAATTGGATCTATTCGAAAATCTATCGACACCTCCAAGACGTTGAAAAAAAGAGGCCACGAATTGTTTATAGAGAAAAGAGCCTGGGAAAGAAGCTAGAATGTTTATTTGCTTTTGGGGGTTGAACATACAAGCAAAGAAGGAGCACGGGAGCTCTGAAAGGAAGAAAGAGCTAAAAGCTGAAAATACTGGGCGGCGGTTGTTGTTGACAATTTCAGTGTGTGTTTGTTTTTGTACTCATTTTTACGTTTAGCGGGAGAAGGAGGTCTAAAGAGCTCCACTAGCCAGTTTTTCTATTTTTTGTGTGTCCATTACTAGCTTGATGACTTTTGTATGCACTAACTGGAACATGAAATACCAGTTTTTTAGAGACCATATTTTTTAGAAAATAGTTTAAGAGGAACGTTCCTCGAGGTTCTTGAGCTTGATTAAATTTACCTAATGCTTTTTTCCGGGACCGGTTTGTTTTTAATTTTTAGAATAAGAAAACTAGAAAATGTTTATCTAGCTTTTGGTGGACTATATTTGATGAGCTGTAAAAAGACAAGTTTCGATTTATGGACTGTATTCTTGAGTAGGTCATTTTTCCCTATAACTTTTCTTCTTATATTCTCGATTCAGACGTTTCCTTACAGTACTACGTTCATCGAACTAGGTCAATTGAATTCACATGTCCTTTGAGCTCTTGTTCAAAACACGTATTCCTGTTCTTTATCTATGCCAGAGAACTGAACGAGTTGTCTCTGTCGTGTCGTCTGCCCTATTCAGAAGGACCTTCTCAGAATCGTAGCGTTCTTTTTCTTCTTCTGTTTTTGTCACGATGCTTGTCCTCGATGCTTTGTCGGTTTTCCCATGAACGAGTACTTC</canonical>
            <polymorphic>ATTTCTTAGGGTGTGACACTCAATTAGAGAAGAAGCAAAGACGAATTTGCACTTGTCACGATAGAATTATACAGTGGTGGCCTCAATTCACGCAAAAGTGCAACATCGCTCATCAATGTGTCCTCAACATCATTAAATTGGATCTATTCGAAAATCTATCGACACCTCCAAGACGTTGAAAAAAAGAGGCCACGAATTGTTTATAGAGAAAAGAGCCTGGGAAAGAAGCTAGAATGTTTATTTGCTTTTGGGGGTTGAACATACAAGCAAAGAAGGAGCACGGGAGCTCTGAAAGGAAGAAAGAGCTAAAAGCTGAAAATACTGGGCGGCGGTTGTTGTTGACAATTTCAGTGTGTGTTTGTTTTTGTACTCATTTTTACGTTTAGCGGGAGAAGGAGGTCTAAAGAGCTCCACTAGCCAGTTTTTCTATTTTTTGTGTGTCCATTACTAGCTTGATGACTTTTGTATGCACTAACTGGAACATGAAATACCAGTTTTTYAGAGACCATATTTTTTAGAAAATAGTTTAAGAGGAACGTTCCTCGAGGTTCTTGAGCTTGATTAAATTTACCTAATGCTTTTTTCCGGGACCGGTTTGTTTTTAATTTTTAGAATAAGAAAACTAGAAAATGTTTATCTAGCTTTTGGTGGACTATATTTGATGAGCTGTAAAAAGACAAGTTTCGATTTATGGACTGTATTCTTGAGTAGGTCATTTTTCCCTATAACTTTTCTTCTTATATTCTCGATTCAGACGTTTCCTTACAGTACTACGTTCATCGAACTAGGTCAATTGAATTCACATGTCCTTTGAGCTCTTGTTCAAAACACGTATTCCTGTTCTTTATCTATGCCAGAGAACTGAACGAGTTGTCTCTGTCGTGTCGTCTGCCCTATTCAGAAGGACCTTCTCAGAATCGTAGCGTTCTTTTTCTTCTTCTGTTTTTGTCACGATGCTTGTCCTCGATGCTTTGTCGGTTTTCCCATGAACGAGTACTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCATTACTAGCTTGATGACTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATCGAAACTTGTCTTTTTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCATTACTAGCTTGATGACTTTTGTATGCACTAACTGGAACATGAAATACCAGTTTTTTAGAGACCATATTTTTTAGAAAATAGTTTAAGAGGAACGTTCCTCGAGGTTCTTGAGCTTGATTAAATTTACCTAATGCTTTTTTCCGGGACCGGTTTGTTTTTAATTTTTAGAATAAGAAAACTAGAAAATGTTTATCTAGCTTTTGGTGGACTATATTTGATGAGCTGTAAAAAGACAAGTTTCGATTT</canonical_amplicon>
		<polymorphic_amplicon>TCCATTACTAGCTTGATGACTTTTGTATGCACTAACTGGAACATGAAATACCAGTTTTTYAGAGACCATATTTTTTAGAAAATAGTTTAAGAGGAACGTTCCTCGAGGTTCTTGAGCTTGATTAAATTTACCTAATGCTTTTTTCCGGGACCGGTTTGTTTTTAATTTTTAGAATAAGAAAACTAGAAAATGTTTATCTAGCTTTTGGTGGACTATATTTGATGAGCTGTAAAAAGACAAGTTTCGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23565</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1693195</contig_pos>
        <strand>+</strand>
        <context>GAAAATAGTT[A/T]AAGAGGAACG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAACATGAAATACCAGTTTTTTAGAGACCATATTTTTTAGAAAATAGTT</left_flank>
        <right_flank>AAGAGGAACGTTCCTCGAGGTTCTTGAGCTTGATTAAATTTACCTAATGC</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGAAGCAAAGACGAATTTGCACTTGTCACGATAGAATTATACAGTGGTGGCCTCAATTCACGCAAAAGTGCAACATCGCTCATCAATGTGTCCTCAACATCATTAAATTGGATCTATTCGAAAATCTATCGACACCTCCAAGACGTTGAAAAAAAGAGGCCACGAATTGTTTATAGAGAAAAGAGCCTGGGAAAGAAGCTAGAATGTTTATTTGCTTTTGGGGGTTGAACATACAAGCAAAGAAGGAGCACGGGAGCTCTGAAAGGAAGAAAGAGCTAAAAGCTGAAAATACTGGGCGGCGGTTGTTGTTGACAATTTCAGTGTGTGTTTGTTTTTGTACTCATTTTTACGTTTAGCGGGAGAAGGAGGTCTAAAGAGCTCCACTAGCCAGTTTTTCTATTTTTTGTGTGTCCATTACTAGCTTGATGACTTTTGTATGCACTAACTGGAACATGAAATACCAGTTTTTTAGAGACCATATTTTTTAGAAAATAGTTTAAGAGGAACGTTCCTCGAGGTTCTTGAGCTTGATTAAATTTACCTAATGCTTTTTTCCGGGACCGGTTTGTTTTTAATTTTTAGAATAAGAAAACTAGAAAATGTTTATCTAGCTTTTGGTGGACTATATTTGATGAGCTGTAAAAAGACAAGTTTCGATTTATGGACTGTATTCTTGAGTAGGTCATTTTTCCCTATAACTTTTCTTCTTATATTCTCGATTCAGACGTTTCCTTACAGTACTACGTTCATCGAACTAGGTCAATTGAATTCACATGTCCTTTGAGCTCTTGTTCAAAACACGTATTCCTGTTCTTTATCTATGCCAGAGAACTGAACGAGTTGTCTCTGTCGTGTCGTCTGCCCTATTCAGAAGGACCTTCTCAGAATCGTAGCGTTCTTTTTCTTCTTCTGTTTTTGTCACGATGCTTGTCCTCGATGCTTTGTCGGTTTTCCCATGAACGAGTACTTCATCACTACTCGGTCCCTCGCCAAGCTTT</canonical>
            <polymorphic>GAAGAAGCAAAGACGAATTTGCACTTGTCACGATAGAATTATACAGTGGTGGCCTCAATTCACGCAAAAGTGCAACATCGCTCATCAATGTGTCCTCAACATCATTAAATTGGATCTATTCGAAAATCTATCGACACCTCCAAGACGTTGAAAAAAAGAGGCCACGAATTGTTTATAGAGAAAAGAGCCTGGGAAAGAAGCTAGAATGTTTATTTGCTTTTGGGGGTTGAACATACAAGCAAAGAAGGAGCACGGGAGCTCTGAAAGGAAGAAAGAGCTAAAAGCTGAAAATACTGGGCGGCGGTTGTTGTTGACAATTTCAGTGTGTGTTTGTTTTTGTACTCATTTTTACGTTTAGCGGGAGAAGGAGGTCTAAAGAGCTCCACTAGCCAGTTTTTCTATTTTTTGTGTGTCCATTACTAGCTTGATGACTTTTGTATGCACTAACTGGAACATGAAATACCAGTTTTTTAGAGACCATATTTTTTAGAAAATAGTTWAAGAGGAACGTTCCTCGAGGTTCTTGAGCTTGATTAAATTTACCTAATGCTTTTTTCCGGGACCGGTTTGTTTTTAATTTTTAGAATAAGAAAACTAGAAAATGTTTATCTAGCTTTTGGTGGACTATATTTGATGAGCTGTAAAAAGACAAGTTTCGATTTATGGACTGTATTCTTGAGTAGGTCATTTTTCCCTATAACTTTTCTTCTTATATTCTCGATTCAGACGTTTCCTTACAGTACTACGTTCATCGAACTAGGTCAATTGAATTCACATGTCCTTTGAGCTCTTGTTCAAAACACGTATTCCTGTTCTTTATCTATGCCAGAGAACTGAACGAGTTGTCTCTGTCGTGTCGTCTGCCCTATTCAGAAGGACCTTCTCAGAATCGTAGCGTTCTTTTTCTTCTTCTGTTTTTGTCACGATGCTTGTCCTCGATGCTTTGTCGGTTTTCCCATGAACGAGTACTTCATCACTACTCGGTCCCTCGCCAAGCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>426 394 105 40 35</canonical_bands>
                <polymorphic_bands>429 426 105 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCATTACTAGCTTGATGACTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATCGAAACTTGTCTTTTTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCATTACTAGCTTGATGACTTTTGTATGCACTAACTGGAACATGAAATACCAGTTTTTTAGAGACCATATTTTTTAGAAAATAGTTTAAGAGGAACGTTCCTCGAGGTTCTTGAGCTTGATTAAATTTACCTAATGCTTTTTTCCGGGACCGGTTTGTTTTTAATTTTTAGAATAAGAAAACTAGAAAATGTTTATCTAGCTTTTGGTGGACTATATTTGATGAGCTGTAAAAAGACAAGTTTCGATTT</canonical_amplicon>
		<polymorphic_amplicon>TCCATTACTAGCTTGATGACTTTTGTATGCACTAACTGGAACATGAAATACCAGTTTTTTAGAGACCATATTTTTTAGAAAATAGTTWAAGAGGAACGTTCCTCGAGGTTCTTGAGCTTGATTAAATTTACCTAATGCTTTTTTCCGGGACCGGTTTGTTTTTAATTTTTAGAATAAGAAAACTAGAAAATGTTTATCTAGCTTTTGGTGGACTATATTTGATGAGCTGTAAAAAGACAAGTTTCGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23566</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1716528</contig_pos>
        <strand>+</strand>
        <context>tggttcaaag[C/T]tggcggtgTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAG</left_flank>
        <right_flank>TGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCTATCACCCAGCCGCCGCGGGACGAAGTGTTAATGACGACGCTTATCAATTATATCTTATCACTTATCCCCTTTGGGCTAAAGATAGAGATGAGGATGACACGGGGATAGGAGAGTGTCTCGTGATGAAGTGACATCGCGGCAAAAAGTCTCACGAAGATTAATGAGATTGTTAAGGATCAGAAAGAGATATTCGTCTTACGACAGTGTGTGAAAAATGATGTTTCAAGTTAGCTGGACATCAGGTGGATCATGTGGAACTGTTTTTTTTAATACTTCGTTAACACTTCTTCCTTCTTTGACCAAGTTTTTGATTCGTATATCATAAACACTCTAATAGAGTTATCCTGTAACTTTATGCCAATTTTTCTCGTTTGTCGTTAAACATGTCAAAAAGTGGTCAACTGACAAAACACTCATCATAATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACA</canonical>
            <polymorphic>TTTTCTATCACCCAGCCGCCGCGGGACGAAGTGTTAATGACGACGCTTATCAATTATATCTTATCACTTATCCCCTTTGGGCTAAAGATAGAGATGAGGATGACACGGGGATAGGAGAGTGTCTCGTGATGAAGTGACATCGCGGCAAAAAGTCTCACGAAGATTAATGAGATTGTTAAGGATCAGAAAGAGATATTCGTCTTACGACAGTGTGTGAAAAATGATGTTTCAAGTTAGCTGGACATCAGGTGGATCATGTGGAACTGTTTTTTTTAATACTTCGTTAACACTTCTTCCTTCTTTGACCAAGTTTTTGATTCGTATATCATAAACACTCTAATAGAGTTATCCTGTAACTTTATGCCAATTTTTCTCGTTTGTCGTTAAACATGTCAAAAAGTGGTCAACTGACAAAACACTCATCATAATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGYTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATTCGTATATCATAAACACTCTAA</pcr_primer_p1>
		<pcr_primer_p2>AATTCAAATTCTTGTTAGTGACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGATTCGTATATCATAAACACTCTAATAGAGTTATCCTGTAACTTTATGCCAATTTTTCTCGTTTGTCGTTAAACATGTCAAAAAGTGGTCAACTGACAAAACACTCATCATAATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAACAAGAATTTGAATT</canonical_amplicon>
		<polymorphic_amplicon>TGATTCGTATATCATAAACACTCTAATAGAGTTATCCTGTAACTTTATGCCAATTTTTCTCGTTTGTCGTTAAACATGTCAAAAAGTGGTCAACTGACAAAACACTCATCATAATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGYTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAACAAGAATTTGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23567</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1716568</contig_pos>
        <strand></strand>
        <context>TTACGGTGGA[T/C]GGTCACTAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGA</left_flank>
        <right_flank>GGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTC</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACGCTTATCAATTATATCTTATCACTTATCCCCTTTGGGCTAAAGATAGAGATGAGGATGACACGGGGATAGGAGAGTGTCTCGTGATGAAGTGACATCGCGGCAAAAAGTCTCACGAAGATTAATGAGATTGTTAAGGATCAGAAAGAGATATTCGTCTTACGACAGTGTGTGAAAAATGATGTTTCAAGTTAGCTGGACATCAGGTGGATCATGTGGAACTGTTTTTTTTAATACTTCGTTAACACTTCTTCCTTCTTTGACCAAGTTTTTGATTCGTATATCATAAACACTCTAATAGAGTTATCCTGTAACTTTATGCCAATTTTTCTCGTTTGTCGTTAAACATGTCAAAAAGTGGTCAACTGACAAAACACTCATCATAATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTT</canonical>
            <polymorphic>CGACGCTTATCAATTATATCTTATCACTTATCCCCTTTGGGCTAAAGATAGAGATGAGGATGACACGGGGATAGGAGAGTGTCTCGTGATGAAGTGACATCGCGGCAAAAAGTCTCACGAAGATTAATGAGATTGTTAAGGATCAGAAAGAGATATTCGTCTTACGACAGTGTGTGAAAAATGATGTTTCAAGTTAGCTGGACATCAGGTGGATCATGTGGAACTGTTTTTTTTAATACTTCGTTAACACTTCTTCCTTCTTTGACCAAGTTTTTGATTCGTATATCATAAACACTCTAATAGAGTTATCCTGTAACTTTATGCCAATTTTTCTCGTTTGTCGTTAAACATGTCAAAAAGTGGTCAACTGACAAAACACTCATCATAATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGAYGGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGATTCGTATATCATAAACAC</pcr_primer_p1>
		<pcr_primer_p2>CAGAGCTGACCACTGAAATAC</pcr_primer_p2>
		<pcr_amplicon_size>282</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGATTCGTATATCATAAACACTCTAATAGAGTTATCCTGTAACTTTATGCCAATTTTTCTCGTTTGTCGTTAAACATGTCAAAAAGTGGTCAACTGACAAAACACTCATCATAATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGATTCGTATATCATAAACACTCTAATAGAGTTATCCTGTAACTTTATGCCAATTTTTCTCGTTTGTCGTTAAACATGTCAAAAAGTGGTCAACTGACAAAACACTCATCATAATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGAYGGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23568</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1716621</contig_pos>
        <strand>+</strand>
        <context>GTCAGCTCTG[C/T]AYTTTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTG</left_flank>
        <right_flank>ATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAGGATGACACGGGGATAGGAGAGTGTCTCGTGATGAAGTGACATCGCGGCAAAAAGTCTCACGAAGATTAATGAGATTGTTAAGGATCAGAAAGAGATATTCGTCTTACGACAGTGTGTGAAAAATGATGTTTCAAGTTAGCTGGACATCAGGTGGATCATGTGGAACTGTTTTTTTTAATACTTCGTTAACACTTCTTCCTTCTTTGACCAAGTTTTTGATTCGTATATCATAAACACTCTAATAGAGTTATCCTGTAACTTTATGCCAATTTTTCTCGTTTGTCGTTAAACATGTCAAAAAGTGGTCAACTGACAAAACACTCATCATAATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTTATTTATAGGACTTCGGAGGGGATATCACTATCACCTCCTTGTTTTAACTATCT</canonical>
            <polymorphic>ATGAGGATGACACGGGGATAGGAGAGTGTCTCGTGATGAAGTGACATCGCGGCAAAAAGTCTCACGAAGATTAATGAGATTGTTAAGGATCAGAAAGAGATATTCGTCTTACGACAGTGTGTGAAAAATGATGTTTCAAGTTAGCTGGACATCAGGTGGATCATGTGGAACTGTTTTTTTTAATACTTCGTTAACACTTCTTCCTTCTTTGACCAAGTTTTTGATTCGTATATCATAAACACTCTAATAGAGTTATCCTGTAACTTTATGCCAATTTTTCTCGTTTGTCGTTAAACATGTCAAAAAGTGGTCAACTGACAAAACACTCATCATAATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGYATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTTATTTATAGGACTTCGGAGGGGATATCACTATCACCTCCTTGTTTTAACTATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATTCGTATATCATAAACACTCTAA</pcr_primer_p1>
		<pcr_primer_p2>TGTTTGCAACAGAATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>331</pcr_amplicon_size>
		<canonical_amplicon>TGATTCGTATATCATAAACACTCTAATAGAGTTATCCTGTAACTTTATGCCAATTTTTCTCGTTTGTCGTTAAACATGTCAAAAAGTGGTCAACTGACAAAACACTCATCATAATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACA</canonical_amplicon>
		<polymorphic_amplicon>TGATTCGTATATCATAAACACTCTAATAGAGTTATCCTGTAACTTTATGCCAATTTTTCTCGTTTGTCGTTAAACATGTCAAAAAGTGGTCAACTGACAAAACACTCATCATAATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGYATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23569</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1716623</contig_pos>
        <strand>+</strand>
        <context>CAGCTCTGYA[C/T]TTTTTTTGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTA</left_flank>
        <right_flank>TTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGATGACACGGGGATAGGAGAGTGTCTCGTGATGAAGTGACATCGCGGCAAAAAGTCTCACGAAGATTAATGAGATTGTTAAGGATCAGAAAGAGATATTCGTCTTACGACAGTGTGTGAAAAATGATGTTTCAAGTTAGCTGGACATCAGGTGGATCATGTGGAACTGTTTTTTTTAATACTTCGTTAACACTTCTTCCTTCTTTGACCAAGTTTTTGATTCGTATATCATAAACACTCTAATAGAGTTATCCTGTAACTTTATGCCAATTTTTCTCGTTTGTCGTTAAACATGTCAAAAAGTGGTCAACTGACAAAACACTCATCATAATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTTATTTATAGGACTTCGGAGGGGATATCACTATCACCTCCTTGTTTTAACTATCTGA</canonical>
            <polymorphic>GAGGATGACACGGGGATAGGAGAGTGTCTCGTGATGAAGTGACATCGCGGCAAAAAGTCTCACGAAGATTAATGAGATTGTTAAGGATCAGAAAGAGATATTCGTCTTACGACAGTGTGTGAAAAATGATGTTTCAAGTTAGCTGGACATCAGGTGGATCATGTGGAACTGTTTTTTTTAATACTTCGTTAACACTTCTTCCTTCTTTGACCAAGTTTTTGATTCGTATATCATAAACACTCTAATAGAGTTATCCTGTAACTTTATGCCAATTTTTCTCGTTTGTCGTTAAACATGTCAAAAAGTGGTCAACTGACAAAACACTCATCATAATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTAYTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTTATTTATAGGACTTCGGAGGGGATATCACTATCACCTCCTTGTTTTAACTATCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATTCGTATATCATAAACACTCTAA</pcr_primer_p1>
		<pcr_primer_p2>TTGTTTGCAACAGAATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>332</pcr_amplicon_size>
		<canonical_amplicon>TGATTCGTATATCATAAACACTCTAATAGAGTTATCCTGTAACTTTATGCCAATTTTTCTCGTTTGTCGTTAAACATGTCAAAAAGTGGTCAACTGACAAAACACTCATCATAATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAA</canonical_amplicon>
		<polymorphic_amplicon>TGATTCGTATATCATAAACACTCTAATAGAGTTATCCTGTAACTTTATGCCAATTTTTCTCGTTTGTCGTTAAACATGTCAAAAAGTGGTCAACTGACAAAACACTCATCATAATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTAYTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23570</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1716646</contig_pos>
        <strand></strand>
        <context>AAAAACAAAT[T/C]GAGTGTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAAT</left_flank>
        <right_flank>GAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGTCTCGTGATGAAGTGACATCGCGGCAAAAAGTCTCACGAAGATTAATGAGATTGTTAAGGATCAGAAAGAGATATTCGTCTTACGACAGTGTGTGAAAAATGATGTTTCAAGTTAGCTGGACATCAGGTGGATCATGTGGAACTGTTTTTTTTAATACTTCGTTAACACTTCTTCCTTCTTTGACCAAGTTTTTGATTCGTATATCATAAACACTCTAATAGAGTTATCCTGTAACTTTATGCCAATTTTTCTCGTTTGTCGTTAAACATGTCAAAAAGTGGTCAACTGACAAAACACTCATCATAATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTTATTTATAGGACTTCGGAGGGGATATCACTATCACCTCCTTGTTTTAACTATCTGATAAGGAGCGACAAGGAAGAAAAG</canonical>
            <polymorphic>GTGTCTCGTGATGAAGTGACATCGCGGCAAAAAGTCTCACGAAGATTAATGAGATTGTTAAGGATCAGAAAGAGATATTCGTCTTACGACAGTGTGTGAAAAATGATGTTTCAAGTTAGCTGGACATCAGGTGGATCATGTGGAACTGTTTTTTTTAATACTTCGTTAACACTTCTTCCTTCTTTGACCAAGTTTTTGATTCGTATATCATAAACACTCTAATAGAGTTATCCTGTAACTTTATGCCAATTTTTCTCGTTTGTCGTTAAACATGTCAAAAAGTGGTCAACTGACAAAACACTCATCATAATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATYGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTTATTTATAGGACTTCGGAGGGGATATCACTATCACCTCCTTGTTTTAACTATCTGATAAGGAGCGACAAGGAAGAAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>247 207 163 119 69 67 55 52 15 6</canonical_bands>
                <polymorphic_bands>247 207 163 119 70 69 67 52 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTCGGGGTTTGTATTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGGACATTCGAAGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATYGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23571</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1716697</contig_pos>
        <strand>+</strand>
        <context>AATACTTTAT[G/T]GCTACTATCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTAT</left_flank>
        <right_flank>GCTACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATTGTTAAGGATCAGAAAGAGATATTCGTCTTACGACAGTGTGTGAAAAATGATGTTTCAAGTTAGCTGGACATCAGGTGGATCATGTGGAACTGTTTTTTTTAATACTTCGTTAACACTTCTTCCTTCTTTGACCAAGTTTTTGATTCGTATATCATAAACACTCTAATAGAGTTATCCTGTAACTTTATGCCAATTTTTCTCGTTTGTCGTTAAACATGTCAAAAAGTGGTCAACTGACAAAACACTCATCATAATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTTATTTATAGGACTTCGGAGGGGATATCACTATCACCTCCTTGTTTTAACTATCTGATAAGGAGCGACAAGGAAGAAAAGAGAAATGGAATGTTGTAGTTGTACTTCCATTTCGAAGACATGTTAGTTTGG</canonical>
            <polymorphic>AGATTGTTAAGGATCAGAAAGAGATATTCGTCTTACGACAGTGTGTGAAAAATGATGTTTCAAGTTAGCTGGACATCAGGTGGATCATGTGGAACTGTTTTTTTTAATACTTCGTTAACACTTCTTCCTTCTTTGACCAAGTTTTTGATTCGTATATCATAAACACTCTAATAGAGTTATCCTGTAACTTTATGCCAATTTTTCTCGTTTGTCGTTAAACATGTCAAAAAGTGGTCAACTGACAAAACACTCATCATAATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATKGCTACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTTATTTATAGGACTTCGGAGGGGATATCACTATCACCTCCTTGTTTTAACTATCTGATAAGGAGCGACAAGGAAGAAAAGAGAAATGGAATGTTGTAGTTGTACTTCCATTTCGAAGACATGTTAGTTTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>350 242 151 100 83 68 6</canonical_bands>
                <polymorphic_bands>350 242 183 151 68 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTCGGGGTTTGTATTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGGACATTCGAAGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATKGCTACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23572</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1716721</contig_pos>
        <strand>+</strand>
        <context>TGAACATCTC[A/T]AGTCTTYCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTC</left_flank>
        <right_flank>AGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTCGTCTTACGACAGTGTGTGAAAAATGATGTTTCAAGTTAGCTGGACATCAGGTGGATCATGTGGAACTGTTTTTTTTAATACTTCGTTAACACTTCTTCCTTCTTTGACCAAGTTTTTGATTCGTATATCATAAACACTCTAATAGAGTTATCCTGTAACTTTATGCCAATTTTTCTCGTTTGTCGTTAAACATGTCAAAAAGTGGTCAACTGACAAAACACTCATCATAATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTTATTTATAGGACTTCGGAGGGGATATCACTATCACCTCCTTGTTTTAACTATCTGATAAGGAGCGACAAGGAAGAAAAGAGAAATGGAATGTTGTAGTTGTACTTCCATTTCGAAGACATGTTAGTTTGGTCATTTCGAGGTGTCGTGTAGATC</canonical>
            <polymorphic>TATTCGTCTTACGACAGTGTGTGAAAAATGATGTTTCAAGTTAGCTGGACATCAGGTGGATCATGTGGAACTGTTTTTTTTAATACTTCGTTAACACTTCTTCCTTCTTTGACCAAGTTTTTGATTCGTATATCATAAACACTCTAATAGAGTTATCCTGTAACTTTATGCCAATTTTTCTCGTTTGTCGTTAAACATGTCAAAAAGTGGTCAACTGACAAAACACTCATCATAATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCWAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTTATTTATAGGACTTCGGAGGGGATATCACTATCACCTCCTTGTTTTAACTATCTGATAAGGAGCGACAAGGAAGAAAAGAGAAATGGAATGTTGTAGTTGTACTTCCATTTCGAAGACATGTTAGTTTGGTCATTTCGAGGTGTCGTGTAGATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>485 304 118 79 14</canonical_bands>
                <polymorphic_bands>485 304 118 93</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTCGGGGTTTGTATTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGGACATTCGAAGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCWAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23573</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1716728</contig_pos>
        <strand>+</strand>
        <context>CTCWAGTCTT[C/T]CCTTCAAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCTAGTCTT</left_flank>
        <right_flank>CCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTACGACAGTGTGTGAAAAATGATGTTTCAAGTTAGCTGGACATCAGGTGGATCATGTGGAACTGTTTTTTTTAATACTTCGTTAACACTTCTTCCTTCTTTGACCAAGTTTTTGATTCGTATATCATAAACACTCTAATAGAGTTATCCTGTAACTTTATGCCAATTTTTCTCGTTTGTCGTTAAACATGTCAAAAAGTGGTCAACTGACAAAACACTCATCATAATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTTATTTATAGGACTTCGGAGGGGATATCACTATCACCTCCTTGTTTTAACTATCTGATAAGGAGCGACAAGGAAGAAAAGAGAAATGGAATGTTGTAGTTGTACTTCCATTTCGAAGACATGTTAGTTTGGTCATTTCGAGGTGTCGTGTAGATCAGTCTCA</canonical>
            <polymorphic>CTTACGACAGTGTGTGAAAAATGATGTTTCAAGTTAGCTGGACATCAGGTGGATCATGTGGAACTGTTTTTTTTAATACTTCGTTAACACTTCTTCCTTCTTTGACCAAGTTTTTGATTCGTATATCATAAACACTCTAATAGAGTTATCCTGTAACTTTATGCCAATTTTTCTCGTTTGTCGTTAAACATGTCAAAAAGTGGTCAACTGACAAAACACTCATCATAATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCTAGTCTTYCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTTATTTATAGGACTTCGGAGGGGATATCACTATCACCTCCTTGTTTTAACTATCTGATAAGGAGCGACAAGGAAGAAAAGAGAAATGGAATGTTGTAGTTGTACTTCCATTTCGAAGACATGTTAGTTTGGTCATTTCGAGGTGTCGTGTAGATCAGTCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTCGGGGTTTGTATTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGGACATTCGAAGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCTAGTCTTYCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23574</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1716852</contig_pos>
        <strand>+</strand>
        <context>TTCAGATTTT[C/T]CGTTCCCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTT</left_flank>
        <right_flank>CGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCATAAACACTCTAATAGAGTTATCCTGTAACTTTATGCCAATTTTTCTCGTTTGTCGTTAAACATGTCAAAAAGTGGTCAACTGACAAAACACTCATCATAATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTTATTTATAGGACTTCGGAGGGGATATCACTATCACCTCCTTGTTTTAACTATCTGATAAGGAGCGACAAGGAAGAAAAGAGAAATGGAATGTTGTAGTTGTACTTCCATTTCGAAGACATGTTAGTTTGGTCATTTCGAGGTGTCGTGTAGATCAGTCTCAAGGTAGTTAGAATTTCTTCTGATATCAGTCAGACAGATATGAATTGGATGGGATGTTTTAAGGAATGTCTGTGAAAATGGATACGGTCGTTGTCGGCACGTTCCACAGCTAACGAGGCGTCCGT</canonical>
            <polymorphic>ATCATAAACACTCTAATAGAGTTATCCTGTAACTTTATGCCAATTTTTCTCGTTTGTCGTTAAACATGTCAAAAAGTGGTCAACTGACAAAACACTCATCATAATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTYCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTTATTTATAGGACTTCGGAGGGGATATCACTATCACCTCCTTGTTTTAACTATCTGATAAGGAGCGACAAGGAAGAAAAGAGAAATGGAATGTTGTAGTTGTACTTCCATTTCGAAGACATGTTAGTTTGGTCATTTCGAGGTGTCGTGTAGATCAGTCTCAAGGTAGTTAGAATTTCTTCTGATATCAGTCAGACAGATATGAATTGGATGGGATGTTTTAAGGAATGTCTGTGAAAATGGATACGGTCGTTGTCGGCACGTTCCACAGCTAACGAGGCGTCCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCAAAAGTCTTCCCTACAAAT</pcr_primer_p1>
		<pcr_primer_p2>GAAAGAAAGAAAAACGTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTYCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23575</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1716930</contig_pos>
        <strand></strand>
        <context>GACATTTCCA[T/C]YTGTTTTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCA</left_flank>
        <right_flank>ATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCA</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCAACTGACAAAACACTCATCATAATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTTATTTATAGGACTTCGGAGGGGATATCACTATCACCTCCTTGTTTTAACTATCTGATAAGGAGCGACAAGGAAGAAAAGAGAAATGGAATGTTGTAGTTGTACTTCCATTTCGAAGACATGTTAGTTTGGTCATTTCGAGGTGTCGTGTAGATCAGTCTCAAGGTAGTTAGAATTTCTTCTGATATCAGTCAGACAGATATGAATTGGATGGGATGTTTTAAGGAATGTCTGTGAAAATGGATACGGTCGTTGTCGGCACGTTCCACAGCTAACGAGGCGTCCGTTAGTCGAACCCACGTCATCAGTCATAAGCGATTTGATCAATCATTTTCGAATAGAATCTCGAGTAATCCAGATGACCT</canonical>
            <polymorphic>GTCAACTGACAAAACACTCATCATAATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCAYATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTTATTTATAGGACTTCGGAGGGGATATCACTATCACCTCCTTGTTTTAACTATCTGATAAGGAGCGACAAGGAAGAAAAGAGAAATGGAATGTTGTAGTTGTACTTCCATTTCGAAGACATGTTAGTTTGGTCATTTCGAGGTGTCGTGTAGATCAGTCTCAAGGTAGTTAGAATTTCTTCTGATATCAGTCAGACAGATATGAATTGGATGGGATGTTTTAAGGAATGTCTGTGAAAATGGATACGGTCGTTGTCGGCACGTTCCACAGCTAACGAGGCGTCCGTTAGTCGAACCCACGTCATCAGTCATAAGCGATTTGATCAATCATTTTCGAATAGAATCTCGAGTAATCCAGATGACCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATATG</site>
                <isoschizomers>
                    <enzyme>FauNDI</enzyme>
                    <enzyme>NdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCCCTACAAATCTTCCCTAC</pcr_primer_p1>
		<pcr_primer_p2>ATCTTGGTGAAAGAAAGAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGAT</canonical_amplicon>
		<polymorphic_amplicon>CTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCAYATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23576</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1716931</contig_pos>
        <strand>+</strand>
        <context>ACATTTCCAY[C/T]TGTTTTGAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCAT</left_flank>
        <right_flank>TGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAACTGACAAAACACTCATCATAATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTTATTTATAGGACTTCGGAGGGGATATCACTATCACCTCCTTGTTTTAACTATCTGATAAGGAGCGACAAGGAAGAAAAGAGAAATGGAATGTTGTAGTTGTACTTCCATTTCGAAGACATGTTAGTTTGGTCATTTCGAGGTGTCGTGTAGATCAGTCTCAAGGTAGTTAGAATTTCTTCTGATATCAGTCAGACAGATATGAATTGGATGGGATGTTTTAAGGAATGTCTGTGAAAATGGATACGGTCGTTGTCGGCACGTTCCACAGCTAACGAGGCGTCCGTTAGTCGAACCCACGTCATCAGTCATAAGCGATTTGATCAATCATTTTCGAATAGAATCTCGAGTAATCCAGATGACCTG</canonical>
            <polymorphic>TCAACTGACAAAACACTCATCATAATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATYTGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTTATTTATAGGACTTCGGAGGGGATATCACTATCACCTCCTTGTTTTAACTATCTGATAAGGAGCGACAAGGAAGAAAAGAGAAATGGAATGTTGTAGTTGTACTTCCATTTCGAAGACATGTTAGTTTGGTCATTTCGAGGTGTCGTGTAGATCAGTCTCAAGGTAGTTAGAATTTCTTCTGATATCAGTCAGACAGATATGAATTGGATGGGATGTTTTAAGGAATGTCTGTGAAAATGGATACGGTCGTTGTCGGCACGTTCCACAGCTAACGAGGCGTCCGTTAGTCGAACCCACGTCATCAGTCATAAGCGATTTGATCAATCATTTTCGAATAGAATCTCGAGTAATCCAGATGACCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATATG</site>
                <isoschizomers>
                    <enzyme>FauNDI</enzyme>
                    <enzyme>NdeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCCCTACAAATCTTCCCTAC</pcr_primer_p1>
		<pcr_primer_p2>ATCTTGGTGAAAGAAAGAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGAT</canonical_amplicon>
		<polymorphic_amplicon>CTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATYTGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23577</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1716953</contig_pos>
        <strand>+</strand>
        <context>TATTCTTCTT[C/T]YTTATTTTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTT</left_flank>
        <right_flank>TTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTTATTTATAGGACTTCGGAGGGGATATCACTATCACCTCCTTGTTTTAACTATCTGATAAGGAGCGACAAGGAAGAAAAGAGAAATGGAATGTTGTAGTTGTACTTCCATTTCGAAGACATGTTAGTTTGGTCATTTCGAGGTGTCGTGTAGATCAGTCTCAAGGTAGTTAGAATTTCTTCTGATATCAGTCAGACAGATATGAATTGGATGGGATGTTTTAAGGAATGTCTGTGAAAATGGATACGGTCGTTGTCGGCACGTTCCACAGCTAACGAGGCGTCCGTTAGTCGAACCCACGTCATCAGTCATAAGCGATTTGATCAATCATTTTCGAATAGAATCTCGAGTAATCCAGATGACCTGAAGACAGTCCAAAGGTTGATCT</canonical>
            <polymorphic>TAATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTYTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTTATTTATAGGACTTCGGAGGGGATATCACTATCACCTCCTTGTTTTAACTATCTGATAAGGAGCGACAAGGAAGAAAAGAGAAATGGAATGTTGTAGTTGTACTTCCATTTCGAAGACATGTTAGTTTGGTCATTTCGAGGTGTCGTGTAGATCAGTCTCAAGGTAGTTAGAATTTCTTCTGATATCAGTCAGACAGATATGAATTGGATGGGATGTTTTAAGGAATGTCTGTGAAAATGGATACGGTCGTTGTCGGCACGTTCCACAGCTAACGAGGCGTCCGTTAGTCGAACCCACGTCATCAGTCATAAGCGATTTGATCAATCATTTTCGAATAGAATCTCGAGTAATCCAGATGACCTGAAGACAGTCCAAAGGTTGATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTTCCTTATCTTTCGTTCTGT</pcr_primer_p1>
		<pcr_primer_p2>CGCTCCTTATCAGATAGTTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTTATTTATAGGACTTCGGAGGGGATATCACTATCACCTCCTTGTTTTAACTATCTGATAAGGAGCG</canonical_amplicon>
		<polymorphic_amplicon>AACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTYTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTTATTTATAGGACTTCGGAGGGGATATCACTATCACCTCCTTGTTTTAACTATCTGATAAGGAGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23578</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1716954</contig_pos>
        <strand>+</strand>
        <context>ATTCTTCTTY[C/T]TTATTTTCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTC</left_flank>
        <right_flank>TTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTTATTTATAGGACTTCGGAGGGGATATCACTATCACCTCCTTGTTTTAACTATCTGATAAGGAGCGACAAGGAAGAAAAGAGAAATGGAATGTTGTAGTTGTACTTCCATTTCGAAGACATGTTAGTTTGGTCATTTCGAGGTGTCGTGTAGATCAGTCTCAAGGTAGTTAGAATTTCTTCTGATATCAGTCAGACAGATATGAATTGGATGGGATGTTTTAAGGAATGTCTGTGAAAATGGATACGGTCGTTGTCGGCACGTTCCACAGCTAACGAGGCGTCCGTTAGTCGAACCCACGTCATCAGTCATAAGCGATTTGATCAATCATTTTCGAATAGAATCTCGAGTAATCCAGATGACCTGAAGACAGTCCAAAGGTTGATCTG</canonical>
            <polymorphic>AATATCAAAATTATATTGCCAGTTGACAGTACCGTATTATTTGTAACGGAGACCGAGATAAATTGGTTCAAAGTTGGCGGTGTTAAACATTTTAACACAGTGTTTACGGTGGATGGTCACTAACAAGAATTTGAATTCGGGGTTTGTATTTCAGTGGTCAGCTCTGTATTTTTTTTGTTGGAAAAACAAATTGAGTGTTTTCAAATTCTGTTGCAAACAAATATTTGTTCAGAATACTTTATGGCTACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCYTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTTATTTATAGGACTTCGGAGGGGATATCACTATCACCTCCTTGTTTTAACTATCTGATAAGGAGCGACAAGGAAGAAAAGAGAAATGGAATGTTGTAGTTGTACTTCCATTTCGAAGACATGTTAGTTTGGTCATTTCGAGGTGTCGTGTAGATCAGTCTCAAGGTAGTTAGAATTTCTTCTGATATCAGTCAGACAGATATGAATTGGATGGGATGTTTTAAGGAATGTCTGTGAAAATGGATACGGTCGTTGTCGGCACGTTCCACAGCTAACGAGGCGTCCGTTAGTCGAACCCACGTCATCAGTCATAAGCGATTTGATCAATCATTTTCGAATAGAATCTCGAGTAATCCAGATGACCTGAAGACAGTCCAAAGGTTGATCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTTCCTTATCTTTCGTTCTGT</pcr_primer_p1>
		<pcr_primer_p2>CGCTCCTTATCAGATAGTTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTTATTTATAGGACTTCGGAGGGGATATCACTATCACCTCCTTGTTTTAACTATCTGATAAGGAGCG</canonical_amplicon>
		<polymorphic_amplicon>AACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCYTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTTATTTATAGGACTTCGGAGGGGATATCACTATCACCTCCTTGTTTTAACTATCTGATAAGGAGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23579</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1717199</contig_pos>
        <strand>+</strand>
        <context>TTAGTTTGGT[A/C]ATTTYGAGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATGGAATGTTGTAGTTGTACTTCCATTTCGAAGACATGTTAGTTTGGT</left_flank>
        <right_flank>ATTTCGAGGTGTCGTGTAGATCAGTCTCAAGGTAGTTAGAATTTCTTCTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTTATTTATAGGACTTCGGAGGGGATATCACTATCACCTCCTTGTTTTAACTATCTGATAAGGAGCGACAAGGAAGAAAAGAGAAATGGAATGTTGTAGTTGTACTTCCATTTCGAAGACATGTTAGTTTGGTCATTTCGAGGTGTCGTGTAGATCAGTCTCAAGGTAGTTAGAATTTCTTCTGATATCAGTCAGACAGATATGAATTGGATGGGATGTTTTAAGGAATGTCTGTGAAAATGGATACGGTCGTTGTCGGCACGTTCCACAGCTAACGAGGCGTCCGTTAGTCGAACCCACGTCATCAGTCATAAGCGATTTGATCAATCATTTTCGAATAGAATCTCGAGTAATCCAGATGACCTGAAGACAGTCCAAAGGTTGATCTGCTATCATATTATTTTGTTTTCGACTGTTCTCATTATACCTAAACTGTACTTTGTGAAAAAAAAAAATATTTTTTCTTCATGCAGGAACTAAATTTTTTAGAAGAGAGGATTTTGAATAATGTCTAAATGACAAAATACTTTGATTTCAAAGGATTCAAAAATAAAGAGAATAGTTTTGTTTACTCCAAAAAACTGTATTTTTGGTCTGAAAAACAGTCTCCAGACGTTTTAAGTACCCAATTTCG</canonical>
            <polymorphic>TACTATCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTTATTTATAGGACTTCGGAGGGGATATCACTATCACCTCCTTGTTTTAACTATCTGATAAGGAGCGACAAGGAAGAAAAGAGAAATGGAATGTTGTAGTTGTACTTCCATTTCGAAGACATGTTAGTTTGGTMATTTCGAGGTGTCGTGTAGATCAGTCTCAAGGTAGTTAGAATTTCTTCTGATATCAGTCAGACAGATATGAATTGGATGGGATGTTTTAAGGAATGTCTGTGAAAATGGATACGGTCGTTGTCGGCACGTTCCACAGCTAACGAGGCGTCCGTTAGTCGAACCCACGTCATCAGTCATAAGCGATTTGATCAATCATTTTCGAATAGAATCTCGAGTAATCCAGATGACCTGAAGACAGTCCAAAGGTTGATCTGCTATCATATTATTTTGTTTTCGACTGTTCTCATTATACCTAAACTGTACTTTGTGAAAAAAAAAAATATTTTTTCTTCATGCAGGAACTAAATTTTTTAGAAGAGAGGATTTTGAATAATGTCTAAATGACAAAATACTTTGATTTCAAAGGATTCAAAAATAAAGAGAATAGTTTTGTTTACTCCAAAAAACTGTATTTTTGGTCTGAAAAACAGTCTCCAGACGTTTTAAGTACCCAATTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAGAGAAATGGAATGTTGTA</pcr_primer_p1>
		<pcr_primer_p2>GATCAAATCGCTTATGACTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAAGAGAAATGGAATGTTGTAGTTGTACTTCCATTTCGAAGACATGTTAGTTTGGTCATTTCGAGGTGTCGTGTAGATCAGTCTCAAGGTAGTTAGAATTTCTTCTGATATCAGTCAGACAGATATGAATTGGATGGGATGTTTTAAGGAATGTCTGTGAAAATGGATACGGTCGTTGTCGGCACGTTCCACAGCTAACGAGGCGTCCGTTAGTCGAACCCACGTCATCAGTCATAAGCGATTTGATC</canonical_amplicon>
		<polymorphic_amplicon>GAAAAGAGAAATGGAATGTTGTAGTTGTACTTCCATTTCGAAGACATGTTAGTTTGGTMATTTCGAGGTGTCGTGTAGATCAGTCTCAAGGTAGTTAGAATTTCTTCTGATATCAGTCAGACAGATATGAATTGGATGGGATGTTTTAAGGAATGTCTGTGAAAATGGATACGGTCGTTGTCGGCACGTTCCACAGCTAACGAGGCGTCCGTTAGTCGAACCCACGTCATCAGTCATAAGCGATTTGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23580</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1717204</contig_pos>
        <strand>+</strand>
        <context>TTGGTMATTT[C/T]GAGGTGTCGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAATGTTGTAGTTGTACTTCCATTTCGAAGACATGTTAGTTTGGTCATTT</left_flank>
        <right_flank>GAGGTGTCGTGTAGATCAGTCTCAAGGTAGTTAGAATTTCTTCTGATATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTTATTTATAGGACTTCGGAGGGGATATCACTATCACCTCCTTGTTTTAACTATCTGATAAGGAGCGACAAGGAAGAAAAGAGAAATGGAATGTTGTAGTTGTACTTCCATTTCGAAGACATGTTAGTTTGGTCATTTCGAGGTGTCGTGTAGATCAGTCTCAAGGTAGTTAGAATTTCTTCTGATATCAGTCAGACAGATATGAATTGGATGGGATGTTTTAAGGAATGTCTGTGAAAATGGATACGGTCGTTGTCGGCACGTTCCACAGCTAACGAGGCGTCCGTTAGTCGAACCCACGTCATCAGTCATAAGCGATTTGATCAATCATTTTCGAATAGAATCTCGAGTAATCCAGATGACCTGAAGACAGTCCAAAGGTTGATCTGCTATCATATTATTTTGTTTTCGACTGTTCTCATTATACCTAAACTGTACTTTGTGAAAAAAAAAAATATTTTTTCTTCATGCAGGAACTAAATTTTTTAGAAGAGAGGATTTTGAATAATGTCTAAATGACAAAATACTTTGATTTCAAAGGATTCAAAAATAAAGAGAATAGTTTTGTTTACTCCAAAAAACTGTATTTTTGGTCTGAAAAACAGTCTCCAGACGTTTTAAGTACCCAATTTCGTCGTC</canonical>
            <polymorphic>TCTAGATGAACATCTCTAGTCTTCCCTTCAAAAGTCTTCCCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTTATTTATAGGACTTCGGAGGGGATATCACTATCACCTCCTTGTTTTAACTATCTGATAAGGAGCGACAAGGAAGAAAAGAGAAATGGAATGTTGTAGTTGTACTTCCATTTCGAAGACATGTTAGTTTGGTCATTTYGAGGTGTCGTGTAGATCAGTCTCAAGGTAGTTAGAATTTCTTCTGATATCAGTCAGACAGATATGAATTGGATGGGATGTTTTAAGGAATGTCTGTGAAAATGGATACGGTCGTTGTCGGCACGTTCCACAGCTAACGAGGCGTCCGTTAGTCGAACCCACGTCATCAGTCATAAGCGATTTGATCAATCATTTTCGAATAGAATCTCGAGTAATCCAGATGACCTGAAGACAGTCCAAAGGTTGATCTGCTATCATATTATTTTGTTTTCGACTGTTCTCATTATACCTAAACTGTACTTTGTGAAAAAAAAAAATATTTTTTCTTCATGCAGGAACTAAATTTTTTAGAAGAGAGGATTTTGAATAATGTCTAAATGACAAAATACTTTGATTTCAAAGGATTCAAAAATAAAGAGAATAGTTTTGTTTACTCCAAAAAACTGTATTTTTGGTCTGAAAAACAGTCTCCAGACGTTTTAAGTACCCAATTTCGTCGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>356 229 153 119 63 43 25 12</canonical_bands>
                <polymorphic_bands>356 229 178 119 63 43 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAGAGAAATGGAATGTTGTA</pcr_primer_p1>
		<pcr_primer_p2>GATCAAATCGCTTATGACTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAAGAGAAATGGAATGTTGTAGTTGTACTTCCATTTCGAAGACATGTTAGTTTGGTCATTTCGAGGTGTCGTGTAGATCAGTCTCAAGGTAGTTAGAATTTCTTCTGATATCAGTCAGACAGATATGAATTGGATGGGATGTTTTAAGGAATGTCTGTGAAAATGGATACGGTCGTTGTCGGCACGTTCCACAGCTAACGAGGCGTCCGTTAGTCGAACCCACGTCATCAGTCATAAGCGATTTGATC</canonical_amplicon>
		<polymorphic_amplicon>GAAAAGAGAAATGGAATGTTGTAGTTGTACTTCCATTTCGAAGACATGTTAGTTTGGTCATTTYGAGGTGTCGTGTAGATCAGTCTCAAGGTAGTTAGAATTTCTTCTGATATCAGTCAGACAGATATGAATTGGATGGGATGTTTTAAGGAATGTCTGTGAAAATGGATACGGTCGTTGTCGGCACGTTCCACAGCTAACGAGGCGTCCGTTAGTCGAACCCACGTCATCAGTCATAAGCGATTTGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23581</snp_id>
        <super_contig>c000000931.Contig1</super_contig>
        <contig_pos>1717243</contig_pos>
        <strand>+</strand>
        <context>AGTTAGAATT[C/T]CTTCTGATAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGGTCATTTCGAGGTGTCGTGTAGATCAGTCTCAAGGTAGTTAGAATT</left_flank>
        <right_flank>CTTCTGATATCAGTCAGACAGATATGAATTGGATGGGATGTTTTAAGGAA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTTATTTATAGGACTTCGGAGGGGATATCACTATCACCTCCTTGTTTTAACTATCTGATAAGGAGCGACAAGGAAGAAAAGAGAAATGGAATGTTGTAGTTGTACTTCCATTTCGAAGACATGTTAGTTTGGTCATTTCGAGGTGTCGTGTAGATCAGTCTCAAGGTAGTTAGAATTTCTTCTGATATCAGTCAGACAGATATGAATTGGATGGGATGTTTTAAGGAATGTCTGTGAAAATGGATACGGTCGTTGTCGGCACGTTCCACAGCTAACGAGGCGTCCGTTAGTCGAACCCACGTCATCAGTCATAAGCGATTTGATCAATCATTTTCGAATAGAATCTCGAGTAATCCAGATGACCTGAAGACAGTCCAAAGGTTGATCTGCTATCATATTATTTTGTTTTCGACTGTTCTCATTATACCTAAACTGTACTTTGTGAAAAAAAAAAATATTTTTTCTTCATGCAGGAACTAAATTTTTTAGAAGAGAGGATTTTGAATAATGTCTAAATGACAAAATACTTTGATTTCAAAGGATTCAAAAATAAAGAGAATAGTTTTGTTTACTCCAAAAAACTGTATTTTTGGTCTGAAAAACAGTCTCCAGACGTTTTAAGTACCCAATTTCGTCGTCTCCAATTTCTTCCTAGTAACGAAGGCAAAGATCTTATTA</canonical>
            <polymorphic>CCTACAAATCTTCCCTACAAAAAAATGTGCTTGTAAACTTATCTAAAACAAAGAGCTAGAGCTCGCATCAAACTTTCTTCGAATGTCCAAAACCGATTTTCAGATTTTTCGTTCCCAAACCAATTTATGAAACTTTGTAACTTCCTTATCTTTCGTTCTGTGACCACTGTCTTCTAGACATTTCCATATGTTTTGAAGGTATTCTTCTTCTTTATTTTCACGTTTTTCTTTCTTTCACCAAGATCCTTTCATGTTTTCTGATCCTTTCCCTTCTACTCTCCAACAATTTCAACCATTTCAAGGCCACGATCACAGTTGGATATTTATTTATAGGACTTCGGAGGGGATATCACTATCACCTCCTTGTTTTAACTATCTGATAAGGAGCGACAAGGAAGAAAAGAGAAATGGAATGTTGTAGTTGTACTTCCATTTCGAAGACATGTTAGTTTGGTCATTTCGAGGTGTCGTGTAGATCAGTCTCAAGGTAGTTAGAATTYCTTCTGATATCAGTCAGACAGATATGAATTGGATGGGATGTTTTAAGGAATGTCTGTGAAAATGGATACGGTCGTTGTCGGCACGTTCCACAGCTAACGAGGCGTCCGTTAGTCGAACCCACGTCATCAGTCATAAGCGATTTGATCAATCATTTTCGAATAGAATCTCGAGTAATCCAGATGACCTGAAGACAGTCCAAAGGTTGATCTGCTATCATATTATTTTGTTTTCGACTGTTCTCATTATACCTAAACTGTACTTTGTGAAAAAAAAAAATATTTTTTCTTCATGCAGGAACTAAATTTTTTAGAAGAGAGGATTTTGAATAATGTCTAAATGACAAAATACTTTGATTTCAAAGGATTCAAAAATAAAGAGAATAGTTTTGTTTACTCCAAAAAACTGTATTTTTGGTCTGAAAAACAGTCTCCAGACGTTTTAAGTACCCAATTTCGTCGTCTCCAATTTCTTCCTAGTAACGAAGGCAAAGATCTTATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>495 306 199</canonical_bands>
                <polymorphic_bands>801 199</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAGAGAAATGGAATGTTGTA</pcr_primer_p1>
		<pcr_primer_p2>GATCAAATCGCTTATGACTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAAGAGAAATGGAATGTTGTAGTTGTACTTCCATTTCGAAGACATGTTAGTTTGGTCATTTCGAGGTGTCGTGTAGATCAGTCTCAAGGTAGTTAGAATTTCTTCTGATATCAGTCAGACAGATATGAATTGGATGGGATGTTTTAAGGAATGTCTGTGAAAATGGATACGGTCGTTGTCGGCACGTTCCACAGCTAACGAGGCGTCCGTTAGTCGAACCCACGTCATCAGTCATAAGCGATTTGATC</canonical_amplicon>
		<polymorphic_amplicon>GAAAAGAGAAATGGAATGTTGTAGTTGTACTTCCATTTCGAAGACATGTTAGTTTGGTCATTTCGAGGTGTCGTGTAGATCAGTCTCAAGGTAGTTAGAATTYCTTCTGATATCAGTCAGACAGATATGAATTGGATGGGATGTTTTAAGGAATGTCTGTGAAAATGGATACGGTCGTTGTCGGCACGTTCCACAGCTAACGAGGCGTCCGTTAGTCGAACCCACGTCATCAGTCATAAGCGATTTGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23582</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>5950</contig_pos>
        <strand></strand>
        <context>CAACACAGGT[G/A]AGGCAGGTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGGACACCGAGTTTTGTGCTCTTTTTGCAATTTTGTTATTCAACACAGGT</left_flank>
        <right_flank>AGGCAGGTTTCAAGTCCTGTCTAGAAGATAAGAAGGTGTCAGTCAAAAGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCACTGTCACTCCTCTTTCAAAACACTTGGTTCCTAAACAAAATTGCTGTTTCGAACATTTTTCGTAAAAATTGAATTTGTTAAATTACCAATTAGGGCTAGCTTGACCCTAGCCCGACTTTTGAGTAATGGGAATAACAGCATAATCAGAATGGTTTTTTTTGCTCATGGCCGACTTTTGCCTAATTCGTATCATTTTCATTTTCTTTCTACACCTTAAAAATAGAATACCAACTGTCCCGTTTAAAAAAAAAAAATTTTTTACAGACTTATCGCTCCTGATGGCTCTTACACCGATTTGTCAGACGACGGAGCTCAGTTTGCCGAAGAGTTCCAAACGATGAAAGATGATCAAGTGATGGATAAGAATCAGTGTCTAAATCTCCTCTACAACCCGTTGAAAGTCTGTCTCAACGAACTCGGCACCGCATTGGAGCACTCAAAAATGACGGACACCGAGTTTTGTGCTCTTTTTGCAATTTTGTTATTCAACACAGGTGAGGCAGGTTTCAAGTCCTGTCTAGAAGATAAGAAGGTGTCAGTCAAAAGTGCAAGTGTTTTTGAAATTTTCAGCCGCTGATAACATCACTGATAGTGTCCGAAACGCGGTGATGATGGCCAGAAATCGGGTGATGAAGGATTGGTTCGAGTTGTATGCAAAACAGGGAAAAACGCCTGAAGAGGTGGGGACATGAGAGAGCTCGGGATAAAAGATGGGATAGAACAATCGTAGAACTAACATTTTTAAATACTCAATCACAGGTAAAATGCGAACGGGTCGNNNNNNNNNNTTTCGCTTACACGGATCCGTTTGGTCATGATTCGCAATCAGATCGGATACGGAGCTCGCGAACGGACAGGATACGGATCAATCCGAATAATGTACGGCTATTTACTGAAAACGGTTGGCGTGCGGTCCGTATGCGGTTCCTATTTCAACCGCGCGCGAACGCGGAGCGTCCGTAACGGATTGTTCGCGAATCACCTGTGATACAGTTAT</canonical>
            <polymorphic>CCACTGTCACTCCTCTTTCAAAACACTTGGTTCCTAAACAAAATTGCTGTTTCGAACATTTTTCGTAAAAATTGAATTTGTTAAATTACCAATTAGGGCTAGCTTGACCCTAGCCCGACTTTTGAGTAATGGGAATAACAGCATAATCAGAATGGTTTTTTTTGCTCATGGCCGACTTTTGCCTAATTCGTATCATTTTCATTTTCTTTCTACACCTTAAAAATAGAATACCAACTGTCCCGTTTAAAAAAAAAAAATTTTTTACAGACTTATCGCTCCTGATGGCTCTTACACCGATTTGTCAGACGACGGAGCTCAGTTTGCCGAAGAGTTCCAAACGATGAAAGATGATCAAGTGATGGATAAGAATCAGTGTCTAAATCTCCTCTACAACCCGTTGAAAGTCTGTCTCAACGAACTCGGCACCGCATTGGAGCACTCAAAAATGACGGACACCGAGTTTTGTGCTCTTTTTGCAATTTTGTTATTCAACACAGGTRAGGCAGGTTTCAAGTCCTGTCTAGAAGATAAGAAGGTGTCAGTCAAAAGTGCAAGTGTTTTTGAAATTTTCAGCCGCTGATAACATCACTGATAGTGTCCGAAACGCGGTGATGATGGCCAGAAATCGGGTGATGAAGGATTGGTTCGAGTTGTATGCAAAACAGGGAAAAACGCCTGAAGAGGTGGGGACATGAGAGAGCTCGGGATAAAAGATGGGATAGAACAATCGTAGAACTAACATTTTTAAATACTCAATCACAGGTAAAATGCGAACGGGTCGNNNNNNNNNNTTTCGCTTACACGGATCCGTTTGGTCATGATTCGCAATCAGATCGGATACGGAGCTCGCGAACGGACAGGATACGGATCAATCCGAATAATGTACGGCTATTTACTGAAAACGGTTGGCGTGCGGTCCGTATGCGGTTCCTATTTCAACCGCGCGCGAACGCGGAGCGTCCGTAACGGATTGTTCGCGAATCACCTGTGATACAGTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>189 111 79 73 71 65 54 50 43 38 31 27 21 17 17 16 14 13 13 12 10 9 6 6 6 6 3</canonical_bands>
                <polymorphic_bands>189 111 79 73 71 65 54 50 44 43 31 27 21 17 17 16 14 13 13 12 10 9 6 6 6 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAAGTGATGGATAAGAATCAG</pcr_primer_p1>
		<pcr_primer_p2>GGACACTATCAGTGATGTTATCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCAAGTGATGGATAAGAATCAGTGTCTAAATCTCCTCTACAACCCGTTGAAAGTCTGTCTCAACGAACTCGGCACCGCATTGGAGCACTCAAAAATGACGGACACCGAGTTTTGTGCTCTTTTTGCAATTTTGTTATTCAACACAGGTGAGGCAGGTTTCAAGTCCTGTCTAGAAGATAAGAAGGTGTCAGTCAAAAGTGCAAGTGTTTTTGAAATTTTCAGCCGCTGATAACATCACTGATAGTGTCC</canonical_amplicon>
		<polymorphic_amplicon>ATCAAGTGATGGATAAGAATCAGTGTCTAAATCTCCTCTACAACCCGTTGAAAGTCTGTCTCAACGAACTCGGCACCGCATTGGAGCACTCAAAAATGACGGACACCGAGTTTTGTGCTCTTTTTGCAATTTTGTTATTCAACACAGGTRAGGCAGGTTTCAAGTCCTGTCTAGAAGATAAGAAGGTGTCAGTCAAAAGTGCAAGTGTTTTTGAAATTTTCAGCCGCTGATAACATCACTGATAGTGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23583</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>15062</contig_pos>
        <strand></strand>
        <context>ATAWAGATTT[T/G]TGGGTAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CACATGTCAACGGACGGGTAGCAGTTTTTTCCTAATATTTATAAAGATTT</left_flank>
        <right_flank>TGGGTAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTAACCACTTTTAGATATCTCTCACAGAAAATGAGACACATGGTCTCAAATTTGACGATTCGGGTGGCGTTCCATTAGAGTGTTCACGGTAAATCCATTTTTTTGAATTAAAGAGTTGTCGAAAAAGAGGATTCCTATCACAACTTCTCATTGAATTGTTTCAACAAAACCCAAATTTCTAAAATTATTTATGTTCATTCATTCTCATTTGTCCTCCTCCAACTTGAAATTTTTCATTCTCTGTTTTCTCAACATTCTTGAGAATTCAATTTTACCTCAACTGGATAGATTCTAGATTTCCTACCTTCGGTGTTTTGGATAAAAAAAATTCACTGGAAAATTGGAAAATTACATAAAATTGCCAAATTGGTGTGTTGTTGTTGTGTGGAGCTTTGCATTTGAACGTTTTCTTTCTCTTCAGAGAAAAAAAAACTAAATTATTCATGTCACATGTCAACGGACGGGTAGCAGTTTTTTCCTAATATTTATAAAGATTTTTGGGTAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTTCGAGAATATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACAATTGTGCAAGAAAGAAAAAATTGCATACTTTGATAGTTTTGCGAAAAAAAACAATTCCTAATACTTTTGTTTGATTCAAAAAAAAAATTCCACTGTTTCAAATTACTTTTTAACTTTTGAACTATTTTTCTTTTCTCGGCCGTCGGCGCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACATTATTCTATGTATCAGCTAAGACTTGTGGAAGGCTTGTCCTAGACTTGTGTGGCTTTGTGTGTTTTCATTCAAACCTGTTGTTCTGTTGTGATTGTATTTGGAATTAGATATACTACAACATTTTATTAGAACACTACACAAAACGAATAATGAAAAAAAAATTAATTAAAATTACAAAAAATTTCC</canonical>
            <polymorphic>AGGTAACCACTTTTAGATATCTCTCACAGAAAATGAGACACATGGTCTCAAATTTGACGATTCGGGTGGCGTTCCATTAGAGTGTTCACGGTAAATCCATTTTTTTGAATTAAAGAGTTGTCGAAAAAGAGGATTCCTATCACAACTTCTCATTGAATTGTTTCAACAAAACCCAAATTTCTAAAATTATTTATGTTCATTCATTCTCATTTGTCCTCCTCCAACTTGAAATTTTTCATTCTCTGTTTTCTCAACATTCTTGAGAATTCAATTTTACCTCAACTGGATAGATTCTAGATTTCCTACCTTCGGTGTTTTGGATAAAAAAAATTCACTGGAAAATTGGAAAATTACATAAAATTGCCAAATTGGTGTGTTGTTGTTGTGTGGAGCTTTGCATTTGAACGTTTTCTTTCTCTTCAGAGAAAAAAAAACTAAATTATTCATGTCACATGTCAACGGACGGGTAGCAGTTTTTTCCTAATATTTATAAAGATTTKTGGGTAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTTCGAGAATATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACAATTGTGCAAGAAAGAAAAAATTGCATACTTTGATAGTTTTGCGAAAAAAAACAATTCCTAATACTTTTGTTTGATTCAAAAAAAAAATTCCACTGTTTCAAATTACTTTTTAACTTTTGAACTATTTTTCTTTTCTCGGCCGTCGGCGCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACATTATTCTATGTATCAGCTAAGACTTGTGGAAGGCTTGTCCTAGACTTGTGTGGCTTTGTGTGTTTTCATTCAAACCTGTTGTTCTGTTGTGATTGTATTTGGAATTAGATATACTACAACATTTTATTAGAACACTACACAAAACGAATAATGAAAAAAAAATTAATTAAAATTACAAAAAATTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTGGTGTGTTGTTGTTGT</pcr_primer_p1>
		<pcr_primer_p2>TGTGGTAAATTAAATGACATGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTGGTGTGTTGTTGTTGTGTGGAGCTTTGCATTTGAACGTTTTCTTTCTCTTCAGAGAAAAAAAAACTAAATTATTCATGTCACATGTCAACGGACGGGTAGCAGTTTTTTCCTAATATTTATAAAGATTTTTGGGTAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTTCGAGAATATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACA</canonical_amplicon>
		<polymorphic_amplicon>AAATTGGTGTGTTGTTGTTGTGTGGAGCTTTGCATTTGAACGTTTTCTTTCTCTTCAGAGAAAAAAAAACTAAATTATTCATGTCACATGTCAACGGACGGGTAGCAGTTTTTTCCTAATATTTATAAAGATTTKTGGGTAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTTCGAGAATATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23584</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>15325</contig_pos>
        <strand></strand>
        <context>GGCCGTCGGC[G/A]Ccaatacttg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCAAATTACTTTTTAACTTTTGAACTATTTTTCTTTTCTCGGCCGTCGGC</left_flank>
        <right_flank>CCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTCAATTTTACCTCAACTGGATAGATTCTAGATTTCCTACCTTCGGTGTTTTGGATAAAAAAAATTCACTGGAAAATTGGAAAATTACATAAAATTGCCAAATTGGTGTGTTGTTGTTGTGTGGAGCTTTGCATTTGAACGTTTTCTTTCTCTTCAGAGAAAAAAAAACTAAATTATTCATGTCACATGTCAACGGACGGGTAGCAGTTTTTTCCTAATATTTATAAAGATTTTTGGGTAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTTCGAGAATATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACAATTGTGCAAGAAAGAAAAAATTGCATACTTTGATAGTTTTGCGAAAAAAAACAATTCCTAATACTTTTGTTTGATTCAAAAAAAAAATTCCACTGTTTCAAATTACTTTTTAACTTTTGAACTATTTTTCTTTTCTCGGCCGTCGGCGCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACATTATTCTATGTATCAGCTAAGACTTGTGGAAGGCTTGTCCTAGACTTGTGTGGCTTTGTGTGTTTTCATTCAAACCTGTTGTTCTGTTGTGATTGTATTTGGAATTAGATATACTACAACATTTTATTAGAACACTACACAAAACGAATAATGAAAAAAAAATTAATTAAAATTACAAAAAATTTCCACCTTTTCGTTTCCTTTTCTTTGAAATCCGTTGAAATTCATCGACAATGACAGTGTAATCGCATCAAGTCGAGTCATCTCATTTCCTCAATTTTTGCTTGTATTTTGAAGTATCCTTTAGACGAGAACATTACGATCCAATTTCTTGCATCTGAAATACAAAAAATCAGAAATATTAAAAATTCTCAGTCTTCGAATTAATACCATCACTTCCTTTTCGAAAAATTTTCACAGTTCTGGTTTCGACATTACTGACTTTCGGAT</canonical>
            <polymorphic>GAATTCAATTTTACCTCAACTGGATAGATTCTAGATTTCCTACCTTCGGTGTTTTGGATAAAAAAAATTCACTGGAAAATTGGAAAATTACATAAAATTGCCAAATTGGTGTGTTGTTGTTGTGTGGAGCTTTGCATTTGAACGTTTTCTTTCTCTTCAGAGAAAAAAAAACTAAATTATTCATGTCACATGTCAACGGACGGGTAGCAGTTTTTTCCTAATATTTATAAAGATTTTTGGGTAATTTTTAAGCTTTACGGTTCATTATAAAAATTACTGTTTCAAGAAATTTTGGTTCGAGAATATTCGTTCAACATAATGATATTGGTACCATGTCATTTAATTTACCACAATTGTGCAAGAAAGAAAAAATTGCATACTTTGATAGTTTTGCGAAAAAAAACAATTCCTAATACTTTTGTTTGATTCAAAAAAAAAATTCCACTGTTTCAAATTACTTTTTAACTTTTGAACTATTTTTCTTTTCTCGGCCGTCGGCRCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACATTATTCTATGTATCAGCTAAGACTTGTGGAAGGCTTGTCCTAGACTTGTGTGGCTTTGTGTGTTTTCATTCAAACCTGTTGTTCTGTTGTGATTGTATTTGGAATTAGATATACTACAACATTTTATTAGAACACTACACAAAACGAATAATGAAAAAAAAATTAATTAAAATTACAAAAAATTTCCACCTTTTCGTTTCCTTTTCTTTGAAATCCGTTGAAATTCATCGACAATGACAGTGTAATCGCATCAAGTCGAGTCATCTCATTTCCTCAATTTTTGCTTGTATTTTGAAGTATCCTTTAGACGAGAACATTACGATCCAATTTCTTGCATCTGAAATACAAAAAATCAGAAATATTAAAAATTCTCAGTCTTCGAATTAATACCATCACTTCCTTTTCGAAAAATTTTCACAGTTCTGGTTTCGACATTACTGACTTTCGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>503 327 170</canonical_bands>
                <polymorphic_bands>673 327</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCGCC</site>
                <isoschizomers>
                    <enzyme>BbeI</enzyme>
                    <enzyme>EgeI</enzyme>
                    <enzyme>EheI</enzyme>
                    <enzyme>KasI</enzyme>
                    <enzyme>Mly113I</enzyme>
                    <enzyme>NarI</enzyme>
                    <enzyme>SfoI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCACTGTTTCAAATTACTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTGTAGTGTTCTAATAAAATGTTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCCACTGTTTCAAATTACTTTTTAACTTTTGAACTATTTTTCTTTTCTCGGCCGTCGGCGCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACATTATTCTATGTATCAGCTAAGACTTGTGGAAGGCTTGTCCTAGACTTGTGTGGCTTTGTGTGTTTTCATTCAAACCTGTTGTTCTGTTGTGATTGTATTTGGAATTAGATATACTACAACATTTTATTAGAACACTACACAA</canonical_amplicon>
		<polymorphic_amplicon>TCCACTGTTTCAAATTACTTTTTAACTTTTGAACTATTTTTCTTTTCTCGGCCGTCGGCRCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACATTATTCTATGTATCAGCTAAGACTTGTGGAAGGCTTGTCCTAGACTTGTGTGGCTTTGTGTGTTTTCATTCAAACCTGTTGTTCTGTTGTGATTGTATTTGGAATTAGATATACTACAACATTTTATTAGAACACTACACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23585</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>27439</contig_pos>
        <strand></strand>
        <context>ttagagccga[G/A]aaaattgagc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACGCACATTTTATCAGTTAACAGATTTTTGATATCATTTATTAGAGCCGA</left_flank>
        <right_flank>AAAATTGAGCTCAAAGTTAACACCTGCTGGAGACGCAGACAACTAAATGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGGGGTCGCTGCTCCTCTTGCAGAAAAATTTCAATACTCTCACCAAAAAAAAAACAACAAACCAGAAATCATTAGCTCGCTAGTCAAAAATACCATGACGTGATTTCGAAATTTCGAAAAAAAAGAGCCCACTAATTGATATTCTGATCACTGTGTTCGCTTTTTGAATCGGCTCATTTTTTGAAGGGAGAGGTGGACCGACCACCCCAAAGAAATAATTGAATTTCTTTCTAGGAAAGCAGATTCGATTTCAGTTTTTGGGTTCTATGGCTTTTCGGGTTTGTTTTCTGAAATTTTCTCAGAAAAAAATTGAGAAAAAGAGACGAAGAGAAGATAGAGTTACTGGTTTCTTTGTGCATTCCTTGCCCTCACGTTTACCTCAATTATCGCATTTCCTGTAAAAGATAACCAAAATCTGTGAACTACATAAATGGTGCTGATATTATAACGCACATTTTATCAGTTAACAGATTTTTGATATCATTTATTAGAGCCGAGAAAATTGAGCTCAAAGTTAACACCTGCTGGAGACGCAGACAACTAAATGATCTCGCTTCTCTGCACTCTCTCCTTTTTACCCACTTTTTTTCTCTTTTAGAGACTCAGAGAAAAATACACTCTAGCTTCTCTATGCCCTCCTCTTGAATCTTTATACTTCTCCTAGACTCTAGAAAAAGTCCTAAAAAGCTCATTAAGTGCATTTCCTTCTTCTTTTTTGATTCCTCATTTTTTCATGGTCCACTTGAGAGAGAAGAAAAAGAGGCTTGTTTATATGACCACAAATTAGATCCGTGTTTTAGTTTTCCGAGGTCATGGAGCATACAGAAGAGAAGATCAAAAGGAGTTTCGAAACCTATTTTTTCCATTTTTGGCTCAAAAATTTAGGAGAGGCACGTAGGTGTTTTATTTGTTTGTGTGTATGAGCAATCCTGGATTAATCTGACTGGAGATTTATTTACAGATTTTTTCAGTTATGACGAATTTGTTGATTTCGAAAT</canonical>
            <polymorphic>ATTGGGGTCGCTGCTCCTCTTGCAGAAAAATTTCAATACTCTCACCAAAAAAAAAACAACAAACCAGAAATCATTAGCTCGCTAGTCAAAAATACCATGACGTGATTTCGAAATTTCGAAAAAAAAGAGCCCACTAATTGATATTCTGATCACTGTGTTCGCTTTTTGAATCGGCTCATTTTTTGAAGGGAGAGGTGGACCGACCACCCCAAAGAAATAATTGAATTTCTTTCTAGGAAAGCAGATTCGATTTCAGTTTTTGGGTTCTATGGCTTTTCGGGTTTGTTTTCTGAAATTTTCTCAGAAAAAAATTGAGAAAAAGAGACGAAGAGAAGATAGAGTTACTGGTTTCTTTGTGCATTCCTTGCCCTCACGTTTACCTCAATTATCGCATTTCCTGTAAAAGATAACCAAAATCTGTGAACTACATAAATGGTGCTGATATTATAACGCACATTTTATCAGTTAACAGATTTTTGATATCATTTATTAGAGCCGARAAAATTGAGCTCAAAGTTAACACCTGCTGGAGACGCAGACAACTAAATGATCTCGCTTCTCTGCACTCTCTCCTTTTTACCCACTTTTTTTCTCTTTTAGAGACTCAGAGAAAAATACACTCTAGCTTCTCTATGCCCTCCTCTTGAATCTTTATACTTCTCCTAGACTCTAGAAAAAGTCCTAAAAAGCTCATTAAGTGCATTTCCTTCTTCTTTTTTGATTCCTCATTTTTTCATGGTCCACTTGAGAGAGAAGAAAAAGAGGCTTGTTTATATGACCACAAATTAGATCCGTGTTTTAGTTTTCCGAGGTCATGGAGCATACAGAAGAGAAGATCAAAAGGAGTTTCGAAACCTATTTTTTCCATTTTTGGCTCAAAAATTTAGGAGAGGCACGTAGGTGTTTTATTTGTTTGTGTGTATGAGCAATCCTGGATTAATCTGACTGGAGATTTATTTACAGATTTTTTCAGTTATGACGAATTTGTTGATTTCGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTGGTTTCTTTGTGCATTC</pcr_primer_p1>
		<pcr_primer_p2>GGCATAGAGAAGCTAGAGTGTATT</pcr_primer_p2>
		<pcr_amplicon_size>295</pcr_amplicon_size>
		<canonical_amplicon>TACTGGTTTCTTTGTGCATTCCTTGCCCTCACGTTTACCTCAATTATCGCATTTCCTGTAAAAGATAACCAAAATCTGTGAACTACATAAATGGTGCTGATATTATAACGCACATTTTATCAGTTAACAGATTTTTGATATCATTTATTAGAGCCGAGAAAATTGAGCTCAAAGTTAACACCTGCTGGAGACGCAGACAACTAAATGATCTCGCTTCTCTGCACTCTCTCCTTTTTACCCACTTTTTTTCTCTTTTAGAGACTCAGAGAAAAATACACTCTAGCTTCTCTATGCC</canonical_amplicon>
		<polymorphic_amplicon>TACTGGTTTCTTTGTGCATTCCTTGCCCTCACGTTTACCTCAATTATCGCATTTCCTGTAAAAGATAACCAAAATCTGTGAACTACATAAATGGTGCTGATATTATAACGCACATTTTATCAGTTAACAGATTTTTGATATCATTTATTAGAGCCGARAAAATTGAGCTCAAAGTTAACACCTGCTGGAGACGCAGACAACTAAATGATCTCGCTTCTCTGCACTCTCTCCTTTTTACCCACTTTTTTTCTCTTTTAGAGACTCAGAGAAAAATACACTCTAGCTTCTCTATGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23586</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>27489</contig_pos>
        <strand></strand>
        <context>caactaaatg[A/C]tctcgcttct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAAATTGAGCTCAAAGTTAACACCTGCTGGAGACGCAGACAACTAAATG</left_flank>
        <right_flank>TCTCGCTTCTCTGCACTCTCTCCTTTTTACCCACTTTTTTTCTCTTTTAG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAACAACAAACCAGAAATCATTAGCTCGCTAGTCAAAAATACCATGACGTGATTTCGAAATTTCGAAAAAAAAGAGCCCACTAATTGATATTCTGATCACTGTGTTCGCTTTTTGAATCGGCTCATTTTTTGAAGGGAGAGGTGGACCGACCACCCCAAAGAAATAATTGAATTTCTTTCTAGGAAAGCAGATTCGATTTCAGTTTTTGGGTTCTATGGCTTTTCGGGTTTGTTTTCTGAAATTTTCTCAGAAAAAAATTGAGAAAAAGAGACGAAGAGAAGATAGAGTTACTGGTTTCTTTGTGCATTCCTTGCCCTCACGTTTACCTCAATTATCGCATTTCCTGTAAAAGATAACCAAAATCTGTGAACTACATAAATGGTGCTGATATTATAACGCACATTTTATCAGTTAACAGATTTTTGATATCATTTATTAGAGCCGAGAAAATTGAGCTCAAAGTTAACACCTGCTGGAGACGCAGACAACTAAATGATCTCGCTTCTCTGCACTCTCTCCTTTTTACCCACTTTTTTTCTCTTTTAGAGACTCAGAGAAAAATACACTCTAGCTTCTCTATGCCCTCCTCTTGAATCTTTATACTTCTCCTAGACTCTAGAAAAAGTCCTAAAAAGCTCATTAAGTGCATTTCCTTCTTCTTTTTTGATTCCTCATTTTTTCATGGTCCACTTGAGAGAGAAGAAAAAGAGGCTTGTTTATATGACCACAAATTAGATCCGTGTTTTAGTTTTCCGAGGTCATGGAGCATACAGAAGAGAAGATCAAAAGGAGTTTCGAAACCTATTTTTTCCATTTTTGGCTCAAAAATTTAGGAGAGGCACGTAGGTGTTTTATTTGTTTGTGTGTATGAGCAATCCTGGATTAATCTGACTGGAGATTTATTTACAGATTTTTTCAGTTATGACGAATTTGTTGATTTCGAAATGGGAAACCAAGAAGAAGCCAAAAAATGATGTTTTAGGGTTTAAGAGGATA</canonical>
            <polymorphic>AAAAAACAACAAACCAGAAATCATTAGCTCGCTAGTCAAAAATACCATGACGTGATTTCGAAATTTCGAAAAAAAAGAGCCCACTAATTGATATTCTGATCACTGTGTTCGCTTTTTGAATCGGCTCATTTTTTGAAGGGAGAGGTGGACCGACCACCCCAAAGAAATAATTGAATTTCTTTCTAGGAAAGCAGATTCGATTTCAGTTTTTGGGTTCTATGGCTTTTCGGGTTTGTTTTCTGAAATTTTCTCAGAAAAAAATTGAGAAAAAGAGACGAAGAGAAGATAGAGTTACTGGTTTCTTTGTGCATTCCTTGCCCTCACGTTTACCTCAATTATCGCATTTCCTGTAAAAGATAACCAAAATCTGTGAACTACATAAATGGTGCTGATATTATAACGCACATTTTATCAGTTAACAGATTTTTGATATCATTTATTAGAGCCGAGAAAATTGAGCTCAAAGTTAACACCTGCTGGAGACGCAGACAACTAAATGMTCTCGCTTCTCTGCACTCTCTCCTTTTTACCCACTTTTTTTCTCTTTTAGAGACTCAGAGAAAAATACACTCTAGCTTCTCTATGCCCTCCTCTTGAATCTTTATACTTCTCCTAGACTCTAGAAAAAGTCCTAAAAAGCTCATTAAGTGCATTTCCTTCTTCTTTTTTGATTCCTCATTTTTTCATGGTCCACTTGAGAGAGAAGAAAAAGAGGCTTGTTTATATGACCACAAATTAGATCCGTGTTTTAGTTTTCCGAGGTCATGGAGCATACAGAAGAGAAGATCAAAAGGAGTTTCGAAACCTATTTTTTCCATTTTTGGCTCAAAAATTTAGGAGAGGCACGTAGGTGTTTTATTTGTTTGTGTGTATGAGCAATCCTGGATTAATCTGACTGGAGATTTATTTACAGATTTTTTCAGTTATGACGAATTTGTTGATTTCGAAATGGGAAACCAAGAAGAAGCCAAAAAATGATGTTTTAGGGTTTAAGAGGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>401 240 216 97 46</canonical_bands>
                <polymorphic_bands>641 216 97 46</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACTGGTTTCTTTGTGCATTC</pcr_primer_p1>
		<pcr_primer_p2>GGCATAGAGAAGCTAGAGTGTATT</pcr_primer_p2>
		<pcr_amplicon_size>295</pcr_amplicon_size>
		<canonical_amplicon>TACTGGTTTCTTTGTGCATTCCTTGCCCTCACGTTTACCTCAATTATCGCATTTCCTGTAAAAGATAACCAAAATCTGTGAACTACATAAATGGTGCTGATATTATAACGCACATTTTATCAGTTAACAGATTTTTGATATCATTTATTAGAGCCGAGAAAATTGAGCTCAAAGTTAACACCTGCTGGAGACGCAGACAACTAAATGATCTCGCTTCTCTGCACTCTCTCCTTTTTACCCACTTTTTTTCTCTTTTAGAGACTCAGAGAAAAATACACTCTAGCTTCTCTATGCC</canonical_amplicon>
		<polymorphic_amplicon>TACTGGTTTCTTTGTGCATTCCTTGCCCTCACGTTTACCTCAATTATCGCATTTCCTGTAAAAGATAACCAAAATCTGTGAACTACATAAATGGTGCTGATATTATAACGCACATTTTATCAGTTAACAGATTTTTGATATCATTTATTAGAGCCGAGAAAATTGAGCTCAAAGTTAACACCTGCTGGAGACGCAGACAACTAAATGMTCTCGCTTCTCTGCACTCTCTCCTTTTTACCCACTTTTTTTCTCTTTTAGAGACTCAGAGAAAAATACACTCTAGCTTCTCTATGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23587</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>27502</contig_pos>
        <strand></strand>
        <context>tcgcttctct[G/A]cactctctcc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAGTTAACACCTGCTGGAGACGCAGACAACTAAATGATCTCGCTTCTCT</left_flank>
        <right_flank>CACTCTCTCCTTTTTACCCACTTTTTTTCTCTTTTAGAGACTCAGAGAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGAAATCATTAGCTCGCTAGTCAAAAATACCATGACGTGATTTCGAAATTTCGAAAAAAAAGAGCCCACTAATTGATATTCTGATCACTGTGTTCGCTTTTTGAATCGGCTCATTTTTTGAAGGGAGAGGTGGACCGACCACCCCAAAGAAATAATTGAATTTCTTTCTAGGAAAGCAGATTCGATTTCAGTTTTTGGGTTCTATGGCTTTTCGGGTTTGTTTTCTGAAATTTTCTCAGAAAAAAATTGAGAAAAAGAGACGAAGAGAAGATAGAGTTACTGGTTTCTTTGTGCATTCCTTGCCCTCACGTTTACCTCAATTATCGCATTTCCTGTAAAAGATAACCAAAATCTGTGAACTACATAAATGGTGCTGATATTATAACGCACATTTTATCAGTTAACAGATTTTTGATATCATTTATTAGAGCCGAGAAAATTGAGCTCAAAGTTAACACCTGCTGGAGACGCAGACAACTAAATGATCTCGCTTCTCTGCACTCTCTCCTTTTTACCCACTTTTTTTCTCTTTTAGAGACTCAGAGAAAAATACACTCTAGCTTCTCTATGCCCTCCTCTTGAATCTTTATACTTCTCCTAGACTCTAGAAAAAGTCCTAAAAAGCTCATTAAGTGCATTTCCTTCTTCTTTTTTGATTCCTCATTTTTTCATGGTCCACTTGAGAGAGAAGAAAAAGAGGCTTGTTTATATGACCACAAATTAGATCCGTGTTTTAGTTTTCCGAGGTCATGGAGCATACAGAAGAGAAGATCAAAAGGAGTTTCGAAACCTATTTTTTCCATTTTTGGCTCAAAAATTTAGGAGAGGCACGTAGGTGTTTTATTTGTTTGTGTGTATGAGCAATCCTGGATTAATCTGACTGGAGATTTATTTACAGATTTTTTCAGTTATGACGAATTTGTTGATTTCGAAATGGGAAACCAAGAAGAAGCCAAAAAATGATGTTTTAGGGTTTAAGAGGATAAGCGACTTTCAGT</canonical>
            <polymorphic>CCAGAAATCATTAGCTCGCTAGTCAAAAATACCATGACGTGATTTCGAAATTTCGAAAAAAAAGAGCCCACTAATTGATATTCTGATCACTGTGTTCGCTTTTTGAATCGGCTCATTTTTTGAAGGGAGAGGTGGACCGACCACCCCAAAGAAATAATTGAATTTCTTTCTAGGAAAGCAGATTCGATTTCAGTTTTTGGGTTCTATGGCTTTTCGGGTTTGTTTTCTGAAATTTTCTCAGAAAAAAATTGAGAAAAAGAGACGAAGAGAAGATAGAGTTACTGGTTTCTTTGTGCATTCCTTGCCCTCACGTTTACCTCAATTATCGCATTTCCTGTAAAAGATAACCAAAATCTGTGAACTACATAAATGGTGCTGATATTATAACGCACATTTTATCAGTTAACAGATTTTTGATATCATTTATTAGAGCCGAGAAAATTGAGCTCAAAGTTAACACCTGCTGGAGACGCAGACAACTAAATGATCTCGCTTCTCTRCACTCTCTCCTTTTTACCCACTTTTTTTCTCTTTTAGAGACTCAGAGAAAAATACACTCTAGCTTCTCTATGCCCTCCTCTTGAATCTTTATACTTCTCCTAGACTCTAGAAAAAGTCCTAAAAAGCTCATTAAGTGCATTTCCTTCTTCTTTTTTGATTCCTCATTTTTTCATGGTCCACTTGAGAGAGAAGAAAAAGAGGCTTGTTTATATGACCACAAATTAGATCCGTGTTTTAGTTTTCCGAGGTCATGGAGCATACAGAAGAGAAGATCAAAAGGAGTTTCGAAACCTATTTTTTCCATTTTTGGCTCAAAAATTTAGGAGAGGCACGTAGGTGTTTTATTTGTTTGTGTGTATGAGCAATCCTGGATTAATCTGACTGGAGATTTATTTACAGATTTTTTCAGTTATGACGAATTTGTTGATTTCGAAATGGGAAACCAAGAAGAAGCCAAAAAATGATGTTTTAGGGTTTAAGAGGATAAGCGACTTTCAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>363 295 205 137</canonical_bands>
                <polymorphic_bands>363 342 295</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACTGGTTTCTTTGTGCATTC</pcr_primer_p1>
		<pcr_primer_p2>GGCATAGAGAAGCTAGAGTGTATT</pcr_primer_p2>
		<pcr_amplicon_size>295</pcr_amplicon_size>
		<canonical_amplicon>TACTGGTTTCTTTGTGCATTCCTTGCCCTCACGTTTACCTCAATTATCGCATTTCCTGTAAAAGATAACCAAAATCTGTGAACTACATAAATGGTGCTGATATTATAACGCACATTTTATCAGTTAACAGATTTTTGATATCATTTATTAGAGCCGAGAAAATTGAGCTCAAAGTTAACACCTGCTGGAGACGCAGACAACTAAATGATCTCGCTTCTCTGCACTCTCTCCTTTTTACCCACTTTTTTTCTCTTTTAGAGACTCAGAGAAAAATACACTCTAGCTTCTCTATGCC</canonical_amplicon>
		<polymorphic_amplicon>TACTGGTTTCTTTGTGCATTCCTTGCCCTCACGTTTACCTCAATTATCGCATTTCCTGTAAAAGATAACCAAAATCTGTGAACTACATAAATGGTGCTGATATTATAACGCACATTTTATCAGTTAACAGATTTTTGATATCATTTATTAGAGCCGAGAAAATTGAGCTCAAAGTTAACACCTGCTGGAGACGCAGACAACTAAATGATCTCGCTTCTCTRCACTCTCTCCTTTTTACCCACTTTTTTTCTCTTTTAGAGACTCAGAGAAAAATACACTCTAGCTTCTCTATGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23588</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>30000</contig_pos>
        <strand>+</strand>
        <context>TTTGTGTTTG[A/G]CTTTTTCTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGACCTTTTCACTCTTTCTGCCCATTTTTGATTGTTTACTTTGTGTTTG</left_flank>
        <right_flank>CTTTTTCTTTCGCTCTTTTATTTGGGTCAGGTTTTGAAGTTCTGGTGCAC</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTTTGATTCTGAATTCTGAATTCTGAATCTCCTGCCACGTCATCACCTATTCTTCTTCTTCTTCCTATATCTTGCCCTCATCTTTTTCTTCTTCTTCTTCATCCTCTGGTTCTACATTTCCCATTAGAATAAGAAAACAGCGAGATGATTCAGAAGACGTGGGGCTTTTTTGCCGCCATTTTTTTTTCTGAAATTCAACACCTCATTATTCGTGTTTTGTGTTCGTAGTGCGTGGGGAGGAACGCCATTTTCAGACTTAATAAAAATTTCAGTTACCATTTTTATAGCAACATCCGCACCTAATCCCTTTTTCATCCTCACAAAAAACCTTTTCCAATCCCTTTTCAGCCTAGCTTTTTTAGATTTTTTTTGCAGATTTTTTCCTCATCACGTCAAGTTTGTTTACCTTTTTTGGATTTGAGCTAAGCTCCGCCCACTTTTTTCTCTAAGACCTTTTCACTCTTTCTGCCCATTTTTGATTGTTTACTTTGTGTTTGGCTTTTTCTTTCGCTCTTTTATTTGGGTCAGGTTTTGAAGTTCTGGTGCACCAACTGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAA</canonical>
            <polymorphic>TGGTTTGATTCTGAATTCTGAATTCTGAATCTCCTGCCACGTCATCACCTATTCTTCTTCTTCTTCCTATATCTTGCCCTCATCTTTTTCTTCTTCTTCTTCATCCTCTGGTTCTACATTTCCCATTAGAATAAGAAAACAGCGAGATGATTCAGAAGACGTGGGGCTTTTTTGCCGCCATTTTTTTTTCTGAAATTCAACACCTCATTATTCGTGTTTTGTGTTCGTAGTGCGTGGGGAGGAACGCCATTTTCAGACTTAATAAAAATTTCAGTTACCATTTTTATAGCAACATCCGCACCTAATCCCTTTTTCATCCTCACAAAAAACCTTTTCCAATCCCTTTTCAGCCTAGCTTTTTTAGATTTTTTTTGCAGATTTTTTCCTCATCACGTCAAGTTTGTTTACCTTTTTTGGATTTGAGCTAAGCTCCGCCCACTTTTTTCTCTAAGACCTTTTCACTCTTTCTGCCCATTTTTGATTGTTTACTTTGTGTTTGRCTTTTTCTTTCGCTCTTTTATTTGGGTCAGGTTTTGAAGTTCTGGTGCACCAACTGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>184 166 127 126 77 74 71 69 56 32 8 5 5</canonical_bands>
                <polymorphic_bands>184 166 148 127 126 74 69 56 32 8 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTTTCAGCCTAGCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CCCCAAAGGAAATAAGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>CCTTTTCAGCCTAGCTTTTTTAGATTTTTTTTGCAGATTTTTTCCTCATCACGTCAAGTTTGTTTACCTTTTTTGGATTTGAGCTAAGCTCCGCCCACTTTTTTCTCTAAGACCTTTTCACTCTTTCTGCCCATTTTTGATTGTTTACTTTGTGTTTGGCTTTTTCTTTCGCTCTTTTATTTGGGTCAGGTTTTGAAGTTCTGGTGCACCAACTGGGTTTCTTATTTCCTTTGGGG</canonical_amplicon>
		<polymorphic_amplicon>CCTTTTCAGCCTAGCTTTTTTAGATTTTTTTTGCAGATTTTTTCCTCATCACGTCAAGTTTGTTTACCTTTTTTGGATTTGAGCTAAGCTCCGCCCACTTTTTTCTCTAAGACCTTTTCACTCTTTCTGCCCATTTTTGATTGTTTACTTTGTGTTTGRCTTTTTCTTTCGCTCTTTTATTTGGGTCAGGTTTTGAAGTTCTGGTGCACCAACTGGGTTTCTTATTTCCTTTGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23589</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>30222</contig_pos>
        <strand></strand>
        <context>aacaaaatgt[A/G]tgaaagttta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGT</left_flank>
        <right_flank>TGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCGTAGTGCGTGGGGAGGAACGCCATTTTCAGACTTAATAAAAATTTCAGTTACCATTTTTATAGCAACATCCGCACCTAATCCCTTTTTCATCCTCACAAAAAACCTTTTCCAATCCCTTTTCAGCCTAGCTTTTTTAGATTTTTTTTGCAGATTTTTTCCTCATCACGTCAAGTTTGTTTACCTTTTTTGGATTTGAGCTAAGCTCCGCCCACTTTTTTCTCTAAGACCTTTTCACTCTTTCTGCCCATTTTTGATTGTTTACTTTGTGTTTGGCTTTTTCTTTCGCTCTTTTATTTGGGTCAGGTTTTGAAGTTCTGGTGCACCAACTGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAATTTATTTTTTTCCAACTTTTTTGGTGCTCTGGATCCTTTTCTACTTCCCAAGATGTTCTTTGATGGCGTTGTCCTTCCTCGAAAAGTGTCTCCTCAAGAATATTTGTCCCACGTCACACAAAAGAAGAAGGAGTTGTCAATCACAGACACTTCCTTACATTCGCACTTACTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTC</canonical>
            <polymorphic>GTTCGTAGTGCGTGGGGAGGAACGCCATTTTCAGACTTAATAAAAATTTCAGTTACCATTTTTATAGCAACATCCGCACCTAATCCCTTTTTCATCCTCACAAAAAACCTTTTCCAATCCCTTTTCAGCCTAGCTTTTTTAGATTTTTTTTGCAGATTTTTTCCTCATCACGTCAAGTTTGTTTACCTTTTTTGGATTTGAGCTAAGCTCCGCCCACTTTTTTCTCTAAGACCTTTTCACTCTTTCTGCCCATTTTTGATTGTTTACTTTGTGTTTGGCTTTTTCTTTCGCTCTTTTATTTGGGTCAGGTTTTGAAGTTCTGGTGCACCAACTGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTRTGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAATTTATTTTTTTCCAACTTTTTTGGTGCTCTGGATCCTTTTCTACTTCCCAAGATGTTCTTTGATGGCGTTGTCCTTCCTCGAAAAGTGTCTCCTCAAGAATATTTGTCCCACGTCACACAAAAGAAGAAGGAGTTGTCAATCACAGACACTTCCTTACATTCGCACTTACTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGGTTTCTTATTTCCTTTG</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGAAATATTTTGGAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>457</pcr_amplicon_size>
		<canonical_amplicon>TGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTRTGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23590</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>30233</contig_pos>
        <strand></strand>
        <context>tgaaagttta[T/G]gctgagcaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTA</left_flank>
        <right_flank>GCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGGGAGGAACGCCATTTTCAGACTTAATAAAAATTTCAGTTACCATTTTTATAGCAACATCCGCACCTAATCCCTTTTTCATCCTCACAAAAAACCTTTTCCAATCCCTTTTCAGCCTAGCTTTTTTAGATTTTTTTTGCAGATTTTTTCCTCATCACGTCAAGTTTGTTTACCTTTTTTGGATTTGAGCTAAGCTCCGCCCACTTTTTTCTCTAAGACCTTTTCACTCTTTCTGCCCATTTTTGATTGTTTACTTTGTGTTTGGCTTTTTCTTTCGCTCTTTTATTTGGGTCAGGTTTTGAAGTTCTGGTGCACCAACTGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAATTTATTTTTTTCCAACTTTTTTGGTGCTCTGGATCCTTTTCTACTTCCCAAGATGTTCTTTGATGGCGTTGTCCTTCCTCGAAAAGTGTCTCCTCAAGAATATTTGTCCCACGTCACACAAAAGAAGAAGGAGTTGTCAATCACAGACACTTCCTTACATTCGCACTTACTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCT</canonical>
            <polymorphic>GTGGGGAGGAACGCCATTTTCAGACTTAATAAAAATTTCAGTTACCATTTTTATAGCAACATCCGCACCTAATCCCTTTTTCATCCTCACAAAAAACCTTTTCCAATCCCTTTTCAGCCTAGCTTTTTTAGATTTTTTTTGCAGATTTTTTCCTCATCACGTCAAGTTTGTTTACCTTTTTTGGATTTGAGCTAAGCTCCGCCCACTTTTTTCTCTAAGACCTTTTCACTCTTTCTGCCCATTTTTGATTGTTTACTTTGTGTTTGGCTTTTTCTTTCGCTCTTTTATTTGGGTCAGGTTTTGAAGTTCTGGTGCACCAACTGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTAKGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAATTTATTTTTTTCCAACTTTTTTGGTGCTCTGGATCCTTTTCTACTTCCCAAGATGTTCTTTGATGGCGTTGTCCTTCCTCGAAAAGTGTCTCCTCAAGAATATTTGTCCCACGTCACACAAAAGAAGAAGGAGTTGTCAATCACAGACACTTCCTTACATTCGCACTTACTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGGTTTCTTATTTCCTTTG</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGAAATATTTTGGAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>457</pcr_amplicon_size>
		<canonical_amplicon>TGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTAKGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23591</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>30276</contig_pos>
        <strand></strand>
        <context>taacagtttt[G/A]gtttttgaga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTT</left_flank>
        <right_flank>GTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCATTTTTATAGCAACATCCGCACCTAATCCCTTTTTCATCCTCACAAAAAACCTTTTCCAATCCCTTTTCAGCCTAGCTTTTTTAGATTTTTTTTGCAGATTTTTTCCTCATCACGTCAAGTTTGTTTACCTTTTTTGGATTTGAGCTAAGCTCCGCCCACTTTTTTCTCTAAGACCTTTTCACTCTTTCTGCCCATTTTTGATTGTTTACTTTGTGTTTGGCTTTTTCTTTCGCTCTTTTATTTGGGTCAGGTTTTGAAGTTCTGGTGCACCAACTGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAATTTATTTTTTTCCAACTTTTTTGGTGCTCTGGATCCTTTTCTACTTCCCAAGATGTTCTTTGATGGCGTTGTCCTTCCTCGAAAAGTGTCTCCTCAAGAATATTTGTCCCACGTCACACAAAAGAAGAAGGAGTTGTCAATCACAGACACTTCCTTACATTCGCACTTACTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTC</canonical>
            <polymorphic>ACCATTTTTATAGCAACATCCGCACCTAATCCCTTTTTCATCCTCACAAAAAACCTTTTCCAATCCCTTTTCAGCCTAGCTTTTTTAGATTTTTTTTGCAGATTTTTTCCTCATCACGTCAAGTTTGTTTACCTTTTTTGGATTTGAGCTAAGCTCCGCCCACTTTTTTCTCTAAGACCTTTTCACTCTTTCTGCCCATTTTTGATTGTTTACTTTGTGTTTGGCTTTTTCTTTCGCTCTTTTATTTGGGTCAGGTTTTGAAGTTCTGGTGCACCAACTGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTRGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAATTTATTTTTTTCCAACTTTTTTGGTGCTCTGGATCCTTTTCTACTTCCCAAGATGTTCTTTGATGGCGTTGTCCTTCCTCGAAAAGTGTCTCCTCAAGAATATTTGTCCCACGTCACACAAAAGAAGAAGGAGTTGTCAATCACAGACACTTCCTTACATTCGCACTTACTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGGTTTCTTATTTCCTTTG</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGAAATATTTTGGAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>457</pcr_amplicon_size>
		<canonical_amplicon>TGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTRGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23592</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>30319</contig_pos>
        <strand></strand>
        <context>gccctttggc[T/G]ccgtcgcttc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGC</left_flank>
        <right_flank>CCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACAAAAAACCTTTTCCAATCCCTTTTCAGCCTAGCTTTTTTAGATTTTTTTTGCAGATTTTTTCCTCATCACGTCAAGTTTGTTTACCTTTTTTGGATTTGAGCTAAGCTCCGCCCACTTTTTTCTCTAAGACCTTTTCACTCTTTCTGCCCATTTTTGATTGTTTACTTTGTGTTTGGCTTTTTCTTTCGCTCTTTTATTTGGGTCAGGTTTTGAAGTTCTGGTGCACCAACTGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAATTTATTTTTTTCCAACTTTTTTGGTGCTCTGGATCCTTTTCTACTTCCCAAGATGTTCTTTGATGGCGTTGTCCTTCCTCGAAAAGTGTCTCCTCAAGAATATTTGTCCCACGTCACACAAAAGAAGAAGGAGTTGTCAATCACAGACACTTCCTTACATTCGCACTTACTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCGATTTTTTTATTC</canonical>
            <polymorphic>TCACAAAAAACCTTTTCCAATCCCTTTTCAGCCTAGCTTTTTTAGATTTTTTTTGCAGATTTTTTCCTCATCACGTCAAGTTTGTTTACCTTTTTTGGATTTGAGCTAAGCTCCGCCCACTTTTTTCTCTAAGACCTTTTCACTCTTTCTGCCCATTTTTGATTGTTTACTTTGTGTTTGGCTTTTTCTTTCGCTCTTTTATTTGGGTCAGGTTTTGAAGTTCTGGTGCACCAACTGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCKCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAATTTATTTTTTTCCAACTTTTTTGGTGCTCTGGATCCTTTTCTACTTCCCAAGATGTTCTTTGATGGCGTTGTCCTTCCTCGAAAAGTGTCTCCTCAAGAATATTTGTCCCACGTCACACAAAAGAAGAAGGAGTTGTCAATCACAGACACTTCCTTACATTCGCACTTACTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCGATTTTTTTATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>446 126 77 74 71 69 56 32 31 8 5 5</canonical_bands>
                <polymorphic_bands>446 126 77 74 71 69 64 32 31 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGGTTTCTTATTTCCTTTG</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGAAATATTTTGGAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>457</pcr_amplicon_size>
		<canonical_amplicon>TGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCKCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23593</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>30367</contig_pos>
        <strand></strand>
        <context>atcagaaact[A/T]taacagctag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACT</left_flank>
        <right_flank>TAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTGCAGATTTTTTCCTCATCACGTCAAGTTTGTTTACCTTTTTTGGATTTGAGCTAAGCTCCGCCCACTTTTTTCTCTAAGACCTTTTCACTCTTTCTGCCCATTTTTGATTGTTTACTTTGTGTTTGGCTTTTTCTTTCGCTCTTTTATTTGGGTCAGGTTTTGAAGTTCTGGTGCACCAACTGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAATTTATTTTTTTCCAACTTTTTTGGTGCTCTGGATCCTTTTCTACTTCCCAAGATGTTCTTTGATGGCGTTGTCCTTCCTCGAAAAGTGTCTCCTCAAGAATATTTGTCCCACGTCACACAAAAGAAGAAGGAGTTGTCAATCACAGACACTTCCTTACATTCGCACTTACTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCGATTTTTTTATTCTGTCACTTTGTGTTTCCATTAAACACTTCTGTTTCTGAATCCCTTCCG</canonical>
            <polymorphic>TTTTTTGCAGATTTTTTCCTCATCACGTCAAGTTTGTTTACCTTTTTTGGATTTGAGCTAAGCTCCGCCCACTTTTTTCTCTAAGACCTTTTCACTCTTTCTGCCCATTTTTGATTGTTTACTTTGTGTTTGGCTTTTTCTTTCGCTCTTTTATTTGGGTCAGGTTTTGAAGTTCTGGTGCACCAACTGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTWTAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAATTTATTTTTTTCCAACTTTTTTGGTGCTCTGGATCCTTTTCTACTTCCCAAGATGTTCTTTGATGGCGTTGTCCTTCCTCGAAAAGTGTCTCCTCAAGAATATTTGTCCCACGTCACACAAAAGAAGAAGGAGTTGTCAATCACAGACACTTCCTTACATTCGCACTTACTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCGATTTTTTTATTCTGTCACTTTGTGTTTCCATTAAACACTTCTGTTTCTGAATCCCTTCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGGTTTCTTATTTCCTTTG</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGAAATATTTTGGAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>457</pcr_amplicon_size>
		<canonical_amplicon>TGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTWTAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23594</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>30512</contig_pos>
        <strand>+</strand>
        <context>ATTTCTTCAA[A/G]TTATTTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAA</left_flank>
        <right_flank>TTATTTTTTTCCAACTTTTTTGGTGCTCTGGATCCTTTTCTACTTCCCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTTTTATTTGGGTCAGGTTTTGAAGTTCTGGTGCACCAACTGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAATTTATTTTTTTCCAACTTTTTTGGTGCTCTGGATCCTTTTCTACTTCCCAAGATGTTCTTTGATGGCGTTGTCCTTCCTCGAAAAGTGTCTCCTCAAGAATATTTGTCCCACGTCACACAAAAGAAGAAGGAGTTGTCAATCACAGACACTTCCTTACATTCGCACTTACTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCGATTTTTTTATTCTGTCACTTTGTGTTTCCATTAAACACTTCTGTTTCTGAATCCCTTCCGAATATTTTAGGAGATGGATCATTAAGAATGTATGGAGAAAAAGATTAGATTGAGGGAAGTGATTTAGGAGGCAAAAAAACTTCCGTACTTCTTACCTTTTTGGTTTGCAAAGGGTTACTGTAGTCTTAAAGGCGCACATCTTGTT</canonical>
            <polymorphic>CTCTTTTATTTGGGTCAGGTTTTGAAGTTCTGGTGCACCAACTGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAARTTATTTTTTTCCAACTTTTTTGGTGCTCTGGATCCTTTTCTACTTCCCAAGATGTTCTTTGATGGCGTTGTCCTTCCTCGAAAAGTGTCTCCTCAAGAATATTTGTCCCACGTCACACAAAAGAAGAAGGAGTTGTCAATCACAGACACTTCCTTACATTCGCACTTACTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCGATTTTTTTATTCTGTCACTTTGTGTTTCCATTAAACACTTCTGTTTCTGAATCCCTTCCGAATATTTTAGGAGATGGATCATTAAGAATGTATGGAGAAAAAGATTAGATTGAGGGAAGTGATTTAGGAGGCAAAAAAACTTCCGTACTTCTTACCTTTTTGGTTTGCAAAGGGTTACTGTAGTCTTAAAGGCGCACATCTTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>503 158 87 87 54 33 27 15 10 10 8 8</canonical_bands>
                <polymorphic_bands>530 158 87 87 54 33 15 10 10 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGGTTTCTTATTTCCTTTG</pcr_primer_p1>
		<pcr_primer_p2>GAACATCTTGGGAAGTAGAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>515</pcr_amplicon_size>
		<canonical_amplicon>TGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAATTTATTTTTTTCCAACTTTTTTGGTGCTCTGGATCCTTTTCTACTTCCCAAGATGTTC</canonical_amplicon>
		<polymorphic_amplicon>TGGGTTTCTTATTTCCTTTGGGGCTCAGGAAGAAGAGGAGCGGGAAATTTCATTTTCTGAAACATGTGCCTTTAAAGTTACAGTACCCCTCTTCTAGCCCTCTATCTTTAAAGGCACGTAACTCAAAAGCCAAATTGCTAGCAAAAGTTAGTAAGCAAACAAAATGTATGAAAGTTTATGCTGAGCAATTCTGTAGTTAACAAATGTTTTCTAACAGTTTTGGTTTTTGAGATATGCGCTTTTAAAGATACTGGGCCCTTTGGCTCCGTCGCTTCTCTGCCTTCATCTTTAAAGGCGCATATATCAGAAACTATAACAGCTAGCAAAAAACTTGGAAACTAACAAATTGTGTGAAATTTCATGCTGAGCAATTTAGTAATTGACAAATTTCAAGCAATTTGTTTTTTTCTGATATGCGCCTTCAAAAAAATTTACAGTTTCCAAAATATTTCTTCAARTTATTTTTTTCCAACTTTTTTGGTGCTCTGGATCCTTTTCTACTTCCCAAGATGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23595</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>32051</contig_pos>
        <strand>+</strand>
        <context>TTTTAATTAG[A/G]TTTGTTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAGAAACTTCACGAATTCTGTGTACATTTTTTTTGGAAATTTTAATTAG</left_flank>
        <right_flank>TTTGTTTTTTTTTGTGGTTGACAAGGATTTCTGGAGAATAGCCGGGTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTCCGGACTTCCAGATTACCACGTCTTCAATGAAGACGTCACGGTGGCAACCCAAGATACTTTTTAAAAATTATATCATCATATTTATTAATAGATCAACGACTAATCCCATGACACTGCCCCTTTAAAAAAACAACTTTTTTTTTGTTTTCTTAATTTCCGGATGTGTGTGTGTCTGTTTATCCGGATGTCCTTTTCCCAAGAAGGCCCAGACTAATGAACATAAGCCACTCTCTCTCTTTTAGACGAGTACATTTGCATTTCTTCCCCTCCGGCCAAAATAAGGAAAAGAGAAGAAACGAACCCTTTTCTCTTCTTCTTCTCCCATTTTTTTGCCTATTTTTAGACACCAACTCGATTTGGCGGCTCCATTTGACGTCAGATTTTTTGGGGTTTCTTTCTCATGAATTTTTGAAGAATTTAATGGATTTTTCTGGAAACCGATTCTCAGAAACTTCACGAATTCTGTGTACATTTTTTTTGGAAATTTTAATTAGTTTTGTTTTTTTTTGTGGTTGACAAGGATTTCTGGAGAATAGCCGGGTTTTGGAGGCACAAAAACATAGCTATAAATGGAAGGAAGAATTCTATAGTTTTGCAGATAGAATAATTTAAAGGCGCATATCTCAAAAACCACCTAACAATATTGCTAAGCATAAAATTCTACACATTTTGTTAGTTTACAGCTTTTTGCTAGATTCGATTGTTTTTGAGTTATGCGCCTTTAAAGTTACGGTACCCCTCCAGAGCGCATGTTCCATCTTTAAAGGCGCATATCTCAAAAACTAAAATAGCTAGAAAATTTTTGACACTATCCGAATGTGTGAAATATTACGCTGAGCAATGTTGCAGTTGACAACGTTTTATTAGCTTTGATAGTTTTGAAGATATGCACCTTTAAAGATACTGTGCCCCTCCTCTTTTCCTCCTCCATCTTTAAAGAGACAGGAGATTTTACGGGGGATTTTTGGGGCCTCGCCTTTATGTATGCAATCGGG</canonical>
            <polymorphic>GTCTCCGGACTTCCAGATTACCACGTCTTCAATGAAGACGTCACGGTGGCAACCCAAGATACTTTTTAAAAATTATATCATCATATTTATTAATAGATCAACGACTAATCCCATGACACTGCCCCTTTAAAAAAACAACTTTTTTTTTGTTTTCTTAATTTCCGGATGTGTGTGTGTCTGTTTATCCGGATGTCCTTTTCCCAAGAAGGCCCAGACTAATGAACATAAGCCACTCTCTCTCTTTTAGACGAGTACATTTGCATTTCTTCCCCTCCGGCCAAAATAAGGAAAAGAGAAGAAACGAACCCTTTTCTCTTCTTCTTCTCCCATTTTTTTGCCTATTTTTAGACACCAACTCGATTTGGCGGCTCCATTTGACGTCAGATTTTTTGGGGTTTCTTTCTCATGAATTTTTGAAGAATTTAATGGATTTTTCTGGAAACCGATTCTCAGAAACTTCACGAATTCTGTGTACATTTTTTTTGGAAATTTTAATTAGRTTTGTTTTTTTTTGTGGTTGACAAGGATTTCTGGAGAATAGCCGGGTTTTGGAGGCACAAAAACATAGCTATAAATGGAAGGAAGAATTCTATAGTTTTGCAGATAGAATAATTTAAAGGCGCATATCTCAAAAACCACCTAACAATATTGCTAAGCATAAAATTCTACACATTTTGTTAGTTTACAGCTTTTTGCTAGATTCGATTGTTTTTGAGTTATGCGCCTTTAAAGTTACGGTACCCCTCCAGAGCGCATGTTCCATCTTTAAAGGCGCATATCTCAAAAACTAAAATAGCTAGAAAATTTTTGACACTATCCGAATGTGTGAAATATTACGCTGAGCAATGTTGCAGTTGACAACGTTTTATTAGCTTTGATAGTTTTGAAGATATGCACCTTTAAAGATACTGTGCCCCTCCTCTTTTCCTCCTCCATCTTTAAAGAGACAGGAGATTTTACGGGGGATTTTTGGGGCCTCGCCTTTATGTATGCAATCGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCCTATTTTTAGACACCAACT</pcr_primer_p1>
		<pcr_primer_p2>CTTCCTTCCATTTATAGCTATGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGCCTATTTTTAGACACCAACTCGATTTGGCGGCTCCATTTGACGTCAGATTTTTTGGGGTTTCTTTCTCATGAATTTTTGAAGAATTTAATGGATTTTTCTGGAAACCGATTCTCAGAAACTTCACGAATTCTGTGTACATTTTTTTTGGAAATTTTAATTAGTTTTGTTTTTTTTTGTGGTTGACAAGGATTTCTGGAGAATAGCCGGGTTTTGGAGGCACAAAAACATAGCTATAAATGGAAGGAAG</canonical_amplicon>
		<polymorphic_amplicon>TGCCTATTTTTAGACACCAACTCGATTTGGCGGCTCCATTTGACGTCAGATTTTTTGGGGTTTCTTTCTCATGAATTTTTGAAGAATTTAATGGATTTTTCTGGAAACCGATTCTCAGAAACTTCACGAATTCTGTGTACATTTTTTTTGGAAATTTTAATTAGRTTTGTTTTTTTTTGTGGTTGACAAGGATTTCTGGAGAATAGCCGGGTTTTGGAGGCACAAAAACATAGCTATAAATGGAAGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23596</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>33437</contig_pos>
        <strand></strand>
        <context>ctcaaaaacc[G/A]tcaactttga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTTCGAGAAATAAGTGAGTCTAATCTTTTCATAGAAGCCCTCAAAAACC</left_flank>
        <right_flank>TCAACTTTGAGCTCAATTATCTCGACTCCTTTGCAAGATATCAAAAATGT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCGAGTAGAACTGAATAAATGAGGTCTTGAGGTCCTCAAGGATGTCACGAGAAATGAAAAATGCATTGCAACTTTTTTTCCTTCTCTTGTGACCTTCTTCTTTTTGCATTTGATTCCTTCCTTTTCGAAACTTGATCCTTTAAACTCCGTTCCCACGTTCCGAATTAGCAGCGCTAATTTGGAACTCTCTGACTCCGCCCCTTTAAGCTCCGCCTACTTTCTTCCAAGGCTCTCAAGCCCATTCACTCCTTTATACTTGCAGAAATGCCGCGCCGCAACCCATTATGGCTTCGTCTACCCGGATCATCCTCCCCATCATCCTCATCTACTACCGAGGAGCTCCGATTGGCAGCTCTTTCCCCGTATAACAACCCAAATGATGAGACCTCATCTATCCCAGATTCCATGGAACATTCTCCAGCGAAGACTTCAGATGATGGAAGTGAGATTTCGAGAAATAAGTGAGTCTAATCTTTTCATAGAAGCCCTCAAAAACCGTCAACTTTGAGCTCAATTATCTCGACTCCTTTGCAAGATATCAAAAATGTGTCAACTGATAGAATGTTTATAATTTTATGATAAAAAATTTATCAGTTGATAATTTTCCTATATCTTTCCGAGATATATGGGCTCAAAGTTGACGGTTTGGGTGGGCTTCTCGAGTGTTTACGGTATCTTGACCCCCCTTATTTTTCAGCTTCAACTCTCCGACCAGCTCGCCATCCCGTTCTCCGAACAAGAAAGTGTCATGGTCCCTATTCGACCAGGTTTCCCTGTCTGGAGAGGAATTTCTACTTCCTCGACGCTTTGAAGCGATTGAGTTGATTCCTGGAACCAGCACCCGAACCACATGTGCCTCCTGCTCTGCCACTGATCTTCTCGAGAGTGAACATGTCACAATTCGAAAGATTTCGCTTCAAGACCCAGCTACAGCCCGGAAGGAGTACCGGAATATCATTCTTTGCCGTCTTCTCCCCCACCCAAATATTCTTCCGATT</canonical>
            <polymorphic>ATCCGAGTAGAACTGAATAAATGAGGTCTTGAGGTCCTCAAGGATGTCACGAGAAATGAAAAATGCATTGCAACTTTTTTTCCTTCTCTTGTGACCTTCTTCTTTTTGCATTTGATTCCTTCCTTTTCGAAACTTGATCCTTTAAACTCCGTTCCCACGTTCCGAATTAGCAGCGCTAATTTGGAACTCTCTGACTCCGCCCCTTTAAGCTCCGCCTACTTTCTTCCAAGGCTCTCAAGCCCATTCACTCCTTTATACTTGCAGAAATGCCGCGCCGCAACCCATTATGGCTTCGTCTACCCGGATCATCCTCCCCATCATCCTCATCTACTACCGAGGAGCTCCGATTGGCAGCTCTTTCCCCGTATAACAACCCAAATGATGAGACCTCATCTATCCCAGATTCCATGGAACATTCTCCAGCGAAGACTTCAGATGATGGAAGTGAGATTTCGAGAAATAAGTGAGTCTAATCTTTTCATAGAAGCCCTCAAAAACCRTCAACTTTGAGCTCAATTATCTCGACTCCTTTGCAAGATATCAAAAATGTGTCAACTGATAGAATGTTTATAATTTTATGATAAAAAATTTATCAGTTGATAATTTTCCTATATCTTTCCGAGATATATGGGCTCAAAGTTGACGGTTTGGGTGGGCTTCTCGAGTGTTTACGGTATCTTGACCCCCCTTATTTTTCAGCTTCAACTCTCCGACCAGCTCGCCATCCCGTTCTCCGAACAAGAAAGTGTCATGGTCCCTATTCGACCAGGTTTCCCTGTCTGGAGAGGAATTTCTACTTCCTCGACGCTTTGAAGCGATTGAGTTGATTCCTGGAACCAGCACCCGAACCACATGTGCCTCCTGCTCTGCCACTGATCTTCTCGAGAGTGAACATGTCACAATTCGAAAGATTTCGCTTCAAGACCCAGCTACAGCCCGGAAGGAGTACCGGAATATCATTCTTTGCCGTCTTCTCCCCCACCCAAATATTCTTCCGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>499 327 146 28</canonical_bands>
                <polymorphic_bands>645 327 28</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>502 359 88 51</canonical_bands>
                <polymorphic_bands>553 359 88</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>297 221 205 110 88 51 28</canonical_bands>
                <polymorphic_bands>297 256 221 110 88 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGATTTCGAGAAATAAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>GAGTTGAAGCTGAAAAATAAGG</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>TGAGATTTCGAGAAATAAGTGAGTCTAATCTTTTCATAGAAGCCCTCAAAAACCGTCAACTTTGAGCTCAATTATCTCGACTCCTTTGCAAGATATCAAAAATGTGTCAACTGATAGAATGTTTATAATTTTATGATAAAAAATTTATCAGTTGATAATTTTCCTATATCTTTCCGAGATATATGGGCTCAAAGTTGACGGTTTGGGTGGGCTTCTCGAGTGTTTACGGTATCTTGACCCCCCTTATTTTTCAGCTTCAACTC</canonical_amplicon>
		<polymorphic_amplicon>TGAGATTTCGAGAAATAAGTGAGTCTAATCTTTTCATAGAAGCCCTCAAAAACCRTCAACTTTGAGCTCAATTATCTCGACTCCTTTGCAAGATATCAAAAATGTGTCAACTGATAGAATGTTTATAATTTTATGATAAAAAATTTATCAGTTGATAATTTTCCTATATCTTTCCGAGATATATGGGCTCAAAGTTGACGGTTTGGGTGGGCTTCTCGAGTGTTTACGGTATCTTGACCCCCCTTATTTTTCAGCTTCAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23597</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>33523</contig_pos>
        <strand></strand>
        <context>ttatgataaa[A/C]aatttatcag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGATATCAAAAATGTGTCAACTGATAGAATGTTTATAATTTTATGATAAA</left_flank>
        <right_flank>AATTTATCAGTTGATAATTTTCCTATATCTTTCCGAGATATATGGGCTCA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTGTGACCTTCTTCTTTTTGCATTTGATTCCTTCCTTTTCGAAACTTGATCCTTTAAACTCCGTTCCCACGTTCCGAATTAGCAGCGCTAATTTGGAACTCTCTGACTCCGCCCCTTTAAGCTCCGCCTACTTTCTTCCAAGGCTCTCAAGCCCATTCACTCCTTTATACTTGCAGAAATGCCGCGCCGCAACCCATTATGGCTTCGTCTACCCGGATCATCCTCCCCATCATCCTCATCTACTACCGAGGAGCTCCGATTGGCAGCTCTTTCCCCGTATAACAACCCAAATGATGAGACCTCATCTATCCCAGATTCCATGGAACATTCTCCAGCGAAGACTTCAGATGATGGAAGTGAGATTTCGAGAAATAAGTGAGTCTAATCTTTTCATAGAAGCCCTCAAAAACCGTCAACTTTGAGCTCAATTATCTCGACTCCTTTGCAAGATATCAAAAATGTGTCAACTGATAGAATGTTTATAATTTTATGATAAAAAATTTATCAGTTGATAATTTTCCTATATCTTTCCGAGATATATGGGCTCAAAGTTGACGGTTTGGGTGGGCTTCTCGAGTGTTTACGGTATCTTGACCCCCCTTATTTTTCAGCTTCAACTCTCCGACCAGCTCGCCATCCCGTTCTCCGAACAAGAAAGTGTCATGGTCCCTATTCGACCAGGTTTCCCTGTCTGGAGAGGAATTTCTACTTCCTCGACGCTTTGAAGCGATTGAGTTGATTCCTGGAACCAGCACCCGAACCACATGTGCCTCCTGCTCTGCCACTGATCTTCTCGAGAGTGAACATGTCACAATTCGAAAGATTTCGCTTCAAGACCCAGCTACAGCCCGGAAGGAGTACCGGAATATCATTCTTTGCCGTCTTCTCCCCCACCCAAATATTCTTCCGATTTCTGAAGCTTACGAGGTGGATACCACGCTGTATACGGTATCGGAACAAATGGATGGAAGGCTTAGCGATATTGTCGAGGAGCGATT</canonical>
            <polymorphic>TCTTGTGACCTTCTTCTTTTTGCATTTGATTCCTTCCTTTTCGAAACTTGATCCTTTAAACTCCGTTCCCACGTTCCGAATTAGCAGCGCTAATTTGGAACTCTCTGACTCCGCCCCTTTAAGCTCCGCCTACTTTCTTCCAAGGCTCTCAAGCCCATTCACTCCTTTATACTTGCAGAAATGCCGCGCCGCAACCCATTATGGCTTCGTCTACCCGGATCATCCTCCCCATCATCCTCATCTACTACCGAGGAGCTCCGATTGGCAGCTCTTTCCCCGTATAACAACCCAAATGATGAGACCTCATCTATCCCAGATTCCATGGAACATTCTCCAGCGAAGACTTCAGATGATGGAAGTGAGATTTCGAGAAATAAGTGAGTCTAATCTTTTCATAGAAGCCCTCAAAAACCGTCAACTTTGAGCTCAATTATCTCGACTCCTTTGCAAGATATCAAAAATGTGTCAACTGATAGAATGTTTATAATTTTATGATAAAMAATTTATCAGTTGATAATTTTCCTATATCTTTCCGAGATATATGGGCTCAAAGTTGACGGTTTGGGTGGGCTTCTCGAGTGTTTACGGTATCTTGACCCCCCTTATTTTTCAGCTTCAACTCTCCGACCAGCTCGCCATCCCGTTCTCCGAACAAGAAAGTGTCATGGTCCCTATTCGACCAGGTTTCCCTGTCTGGAGAGGAATTTCTACTTCCTCGACGCTTTGAAGCGATTGAGTTGATTCCTGGAACCAGCACCCGAACCACATGTGCCTCCTGCTCTGCCACTGATCTTCTCGAGAGTGAACATGTCACAATTCGAAAGATTTCGCTTCAAGACCCAGCTACAGCCCGGAAGGAGTACCGGAATATCATTCTTTGCCGTCTTCTCCCCCACCCAAATATTCTTCCGATTTCTGAAGCTTACGAGGTGGATACCACGCTGTATACGGTATCGGAACAAATGGATGGAAGGCTTAGCGATATTGTCGAGGAGCGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>500 298 202</canonical_bands>
                <polymorphic_bands>702 298</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGATTTCGAGAAATAAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>GAGTTGAAGCTGAAAAATAAGG</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>TGAGATTTCGAGAAATAAGTGAGTCTAATCTTTTCATAGAAGCCCTCAAAAACCGTCAACTTTGAGCTCAATTATCTCGACTCCTTTGCAAGATATCAAAAATGTGTCAACTGATAGAATGTTTATAATTTTATGATAAAAAATTTATCAGTTGATAATTTTCCTATATCTTTCCGAGATATATGGGCTCAAAGTTGACGGTTTGGGTGGGCTTCTCGAGTGTTTACGGTATCTTGACCCCCCTTATTTTTCAGCTTCAACTC</canonical_amplicon>
		<polymorphic_amplicon>TGAGATTTCGAGAAATAAGTGAGTCTAATCTTTTCATAGAAGCCCTCAAAAACCGTCAACTTTGAGCTCAATTATCTCGACTCCTTTGCAAGATATCAAAAATGTGTCAACTGATAGAATGTTTATAATTTTATGATAAAMAATTTATCAGTTGATAATTTTCCTATATCTTTCCGAGATATATGGGCTCAAAGTTGACGGTTTGGGTGGGCTTCTCGAGTGTTTACGGTATCTTGACCCCCCTTATTTTTCAGCTTCAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23598</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>33597</contig_pos>
        <strand></strand>
        <context>gggtgggctt[C/A]tcgagtgttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TATATCTTTCCGAGATATATGGGCTCAAAGTTGACGGTTTGGGTGGGCTT</left_flank>
        <right_flank>TCGAGTGTTTACGGTATCTTGACCCCCCTTATTTTTCAGCTTCAACTCTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCGAATTAGCAGCGCTAATTTGGAACTCTCTGACTCCGCCCCTTTAAGCTCCGCCTACTTTCTTCCAAGGCTCTCAAGCCCATTCACTCCTTTATACTTGCAGAAATGCCGCGCCGCAACCCATTATGGCTTCGTCTACCCGGATCATCCTCCCCATCATCCTCATCTACTACCGAGGAGCTCCGATTGGCAGCTCTTTCCCCGTATAACAACCCAAATGATGAGACCTCATCTATCCCAGATTCCATGGAACATTCTCCAGCGAAGACTTCAGATGATGGAAGTGAGATTTCGAGAAATAAGTGAGTCTAATCTTTTCATAGAAGCCCTCAAAAACCGTCAACTTTGAGCTCAATTATCTCGACTCCTTTGCAAGATATCAAAAATGTGTCAACTGATAGAATGTTTATAATTTTATGATAAAAAATTTATCAGTTGATAATTTTCCTATATCTTTCCGAGATATATGGGCTCAAAGTTGACGGTTTGGGTGGGCTTCTCGAGTGTTTACGGTATCTTGACCCCCCTTATTTTTCAGCTTCAACTCTCCGACCAGCTCGCCATCCCGTTCTCCGAACAAGAAAGTGTCATGGTCCCTATTCGACCAGGTTTCCCTGTCTGGAGAGGAATTTCTACTTCCTCGACGCTTTGAAGCGATTGAGTTGATTCCTGGAACCAGCACCCGAACCACATGTGCCTCCTGCTCTGCCACTGATCTTCTCGAGAGTGAACATGTCACAATTCGAAAGATTTCGCTTCAAGACCCAGCTACAGCCCGGAAGGAGTACCGGAATATCATTCTTTGCCGTCTTCTCCCCCACCCAAATATTCTTCCGATTTCTGAAGCTTACGAGGTGGATACCACGCTGTATACGGTATCGGAACAAATGGATGGAAGGCTTAGCGATATTGTCGAGGAGCGATTGACCCATTTCGTTGTGGCTAAGATTACCCATCAAGTGTTGGCTGCGGTGGCTATGATGCATCAAAATGGAATCG</canonical>
            <polymorphic>TCCGAATTAGCAGCGCTAATTTGGAACTCTCTGACTCCGCCCCTTTAAGCTCCGCCTACTTTCTTCCAAGGCTCTCAAGCCCATTCACTCCTTTATACTTGCAGAAATGCCGCGCCGCAACCCATTATGGCTTCGTCTACCCGGATCATCCTCCCCATCATCCTCATCTACTACCGAGGAGCTCCGATTGGCAGCTCTTTCCCCGTATAACAACCCAAATGATGAGACCTCATCTATCCCAGATTCCATGGAACATTCTCCAGCGAAGACTTCAGATGATGGAAGTGAGATTTCGAGAAATAAGTGAGTCTAATCTTTTCATAGAAGCCCTCAAAAACCGTCAACTTTGAGCTCAATTATCTCGACTCCTTTGCAAGATATCAAAAATGTGTCAACTGATAGAATGTTTATAATTTTATGATAAAAAATTTATCAGTTGATAATTTTCCTATATCTTTCCGAGATATATGGGCTCAAAGTTGACGGTTTGGGTGGGCTTMTCGAGTGTTTACGGTATCTTGACCCCCCTTATTTTTCAGCTTCAACTCTCCGACCAGCTCGCCATCCCGTTCTCCGAACAAGAAAGTGTCATGGTCCCTATTCGACCAGGTTTCCCTGTCTGGAGAGGAATTTCTACTTCCTCGACGCTTTGAAGCGATTGAGTTGATTCCTGGAACCAGCACCCGAACCACATGTGCCTCCTGCTCTGCCACTGATCTTCTCGAGAGTGAACATGTCACAATTCGAAAGATTTCGCTTCAAGACCCAGCTACAGCCCGGAAGGAGTACCGGAATATCATTCTTTGCCGTCTTCTCCCCCACCCAAATATTCTTCCGATTTCTGAAGCTTACGAGGTGGATACCACGCTGTATACGGTATCGGAACAAATGGATGGAAGGCTTAGCGATATTGTCGAGGAGCGATTGACCCATTTCGTTGTGGCTAAGATTACCCATCAAGTGTTGGCTGCGGTGGCTATGATGCATCAAAATGGAATCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 279 221</canonical_bands>
                <polymorphic_bands>721 279</polymorphic_bands>
            </assay>
            <assay>
                <site>CTCGAG</site>
                <isoschizomers>
                    <enzyme>BssHI</enzyme>
                    <enzyme>PaeR7I</enzyme>
                    <enzyme>SciI</enzyme>
                    <enzyme>Sfr274I</enzyme>
                    <enzyme>SlaI</enzyme>
                    <enzyme>TliI</enzyme>
                    <enzyme>XhoI</enzyme>
                </isoschizomers>
                <canonical_bands>500 279 221</canonical_bands>
                <polymorphic_bands>721 279</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>294 240 139 102 101 67 37 18 2</canonical_bands>
                <polymorphic_bands>294 240 157 102 101 67 37 2</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>426 279 221 74</canonical_bands>
                <polymorphic_bands>647 279 74</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGATTTCGAGAAATAAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>GACACTTTCTTGTTCGGAGA</pcr_primer_p2>
		<pcr_amplicon_size>305</pcr_amplicon_size>
		<canonical_amplicon>TGAGATTTCGAGAAATAAGTGAGTCTAATCTTTTCATAGAAGCCCTCAAAAACCGTCAACTTTGAGCTCAATTATCTCGACTCCTTTGCAAGATATCAAAAATGTGTCAACTGATAGAATGTTTATAATTTTATGATAAAAAATTTATCAGTTGATAATTTTCCTATATCTTTCCGAGATATATGGGCTCAAAGTTGACGGTTTGGGTGGGCTTCTCGAGTGTTTACGGTATCTTGACCCCCCTTATTTTTCAGCTTCAACTCTCCGACCAGCTCGCCATCCCGTTCTCCGAACAAGAAAGTGTC</canonical_amplicon>
		<polymorphic_amplicon>TGAGATTTCGAGAAATAAGTGAGTCTAATCTTTTCATAGAAGCCCTCAAAAACCGTCAACTTTGAGCTCAATTATCTCGACTCCTTTGCAAGATATCAAAAATGTGTCAACTGATAGAATGTTTATAATTTTATGATAAAAAATTTATCAGTTGATAATTTTCCTATATCTTTCCGAGATATATGGGCTCAAAGTTGACGGTTTGGGTGGGCTTMTCGAGTGTTTACGGTATCTTGACCCCCCTTATTTTTCAGCTTCAACTCTCCGACCAGCTCGCCATCCCGTTCTCCGAACAAGAAAGTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23599</snp_id>
        <super_contig>c000000961.Contig1</super_contig>
        <contig_pos>85533</contig_pos>
        <strand></strand>
        <context>AGCTTGAAGA[A/G]TTTTGAAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTAAAATTTTTGAAACAGTACATTTTGAAAAGTTTTCAAAGCTTGAAGA</left_flank>
        <right_flank>TTTTGAAATGTTCTATAACTTTAAAAAAAAAGCTGAAATCGATTTTTCTA</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTGGAACTTTATTTTTTTGATCAGTACTGTTCAAGTCTCCCAAGATTTTGGAAATTCGGGAACTTTTAAATTTCCTGAATTCTCTATTTTTCCGAACCCCAAGAAGTTTAATTTCCTTTTATTTATTTTTTTCAAAATGATGTCACTCCTCAATTTCCCTCTTTTAGTATAGTTTCCAAGAAATTCAAATTCTCGATTTTCAATTCATTTCAATTCTCTGATTCGTGATTCATCTCTCTCGCCACCTTCACATTTTCTCACTTTTATTTAAAAAATTCAGAATCCTTAATTTGCGTTTTCAATTCAAAATCAGTCAACTGGAAATTTAGGCTTTCTTTTTTGTTTCAAGGGCAAAAAATGCTTTATTTTTGAACTTTTGAGCTTTAAAAACCTGATTTTTGGATATCAAATATGGAGGCATATTAGATTAAAACTTTTTTTCAGAATATTTAAAATTTTTGAAACAGTACATTTTGAAAAGTTTTCAAAGCTTGAAGAATTTTGAAATGTTCTATAACTTTAAAAAAAAAGCTGAAATCGATTTTTCTATAAAATAGGGCTTTTGCTATTTGACAGTACTTTTTTCAATTTTTTTTCTGTTTCTCATTTTATAAAAACTCAAAGTATAGTTTCTGAAAATTGTTCCTCCGCAGTATTTACAAATATTACGAATTTAATATTCTAGAAAAAATTCTGAAGTCTTGCCTTCTAGAATATTCTTGTTCCCTATTATATAATTTTAGATGTCGAAGGATTTTATTATATAATGCATAAAAATGTCACTATTTCTAGAATCTAGAAATGGAAGCTCCTCAGTTCTTTGTGCAGATCAAACTAGAGATTTTCAGAATCTGACAATCTCAAAGTCTCAAAGTCTCAGCATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCGGATTCTCTAATTCTCTGAGTATCTGAATATCAGAATCTTAGAATCTCAGAATCTCAGAATCTCA</canonical>
            <polymorphic>ACTGGAACTTTATTTTTTTGATCAGTACTGTTCAAGTCTCCCAAGATTTTGGAAATTCGGGAACTTTTAAATTTCCTGAATTCTCTATTTTTCCGAACCCCAAGAAGTTTAATTTCCTTTTATTTATTTTTTTCAAAATGATGTCACTCCTCAATTTCCCTCTTTTAGTATAGTTTCCAAGAAATTCAAATTCTCGATTTTCAATTCATTTCAATTCTCTGATTCGTGATTCATCTCTCTCGCCACCTTCACATTTTCTCACTTTTATTTAAAAAATTCAGAATCCTTAATTTGCGTTTTCAATTCAAAATCAGTCAACTGGAAATTTAGGCTTTCTTTTTTGTTTCAAGGGCAAAAAATGCTTTATTTTTGAACTTTTGAGCTTTAAAAACCTGATTTTTGGATATCAAATATGGAGGCATATTAGATTAAAACTTTTTTTCAGAATATTTAAAATTTTTGAAACAGTACATTTTGAAAAGTTTTCAAAGCTTGAAGARTTTTGAAATGTTCTATAACTTTAAAAAAAAAGCTGAAATCGATTTTTCTATAAAATAGGGCTTTTGCTATTTGACAGTACTTTTTTCAATTTTTTTTCTGTTTCTCATTTTATAAAAACTCAAAGTATAGTTTCTGAAAATTGTTCCTCCGCAGTATTTACAAATATTACGAATTTAATATTCTAGAAAAAATTCTGAAGTCTTGCCTTCTAGAATATTCTTGTTCCCTATTATATAATTTTAGATGTCGAAGGATTTTATTATATAATGCATAAAAATGTCACTATTTCTAGAATCTAGAAATGGAAGCTCCTCAGTTCTTTGTGCAGATCAAACTAGAGATTTTCAGAATCTGACAATCTCAAAGTCTCAAAGTCTCAGCATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCGGATTCTCTAATTCTCTGAGTATCTGAATATCAGAATCTTAGAATCTCAGAATCTCAGAATCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>310 173 131 104 86 53 49 44 19 16 9 6</canonical_bands>
                <polymorphic_bands>310 217 131 104 86 53 49 19 16 9 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>208 131 89 62 56 53 51 46 44 42 33 32 30 22 19 16 14 14 13 10 9 6</canonical_bands>
                <polymorphic_bands>208 133 131 62 56 53 51 46 42 33 32 30 22 19 16 14 14 13 10 9 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGAGGCATATTAGATTAAAACTT</pcr_primer_p1>
		<pcr_primer_p2>TGTAAATACTGCGGAGGAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGGAGGCATATTAGATTAAAACTTTTTTTCAGAATATTTAAAATTTTTGAAACAGTACATTTTGAAAAGTTTTCAAAGCTTGAAGAATTTTGAAATGTTCTATAACTTTAAAAAAAAAGCTGAAATCGATTTTTCTATAAAATAGGGCTTTTGCTATTTGACAGTACTTTTTTCAATTTTTTTTCTGTTTCTCATTTTATAAAAACTCAAAGTATAGTTTCTGAAAATTGTTCCTCCGCAGTATTTACA</canonical_amplicon>
		<polymorphic_amplicon>TGGAGGCATATTAGATTAAAACTTTTTTTCAGAATATTTAAAATTTTTGAAACAGTACATTTTGAAAAGTTTTCAAAGCTTGAAGARTTTTGAAATGTTCTATAACTTTAAAAAAAAAGCTGAAATCGATTTTTCTATAAAATAGGGCTTTTGCTATTTGACAGTACTTTTTTCAATTTTTTTTCTGTTTCTCATTTTATAAAAACTCAAAGTATAGTTTCTGAAAATTGTTCCTCCGCAGTATTTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23607</snp_id>
        <super_contig>c000100517.Contig2</super_contig>
        <contig_pos>48215</contig_pos>
        <strand></strand>
        <context>aagctatata[G/A]gatccttcgg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGATCGTTCTGAAGCATCTTGGATCCTCTCGAATCCTCTAAAGCTATATA</left_flank>
        <right_flank>GATCCTTCGGTAGCTTCTAGAACTGTCTAGAACTCTCTAGGCTCGTTTTC</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCACAATGGACCAAATTAAAATCAATATCGATAAGTGTCGGTATAGACGGCTCGACAAACTTCAAAAGGACTTTTTCGACTTGTTCGAAACAGCAAGAGAGTTGGCGAAGCTCGAATCACCGATCTATGAAGCGGCGTGTCAGTTGCAGAAGGCGTTCATTGTGGAGAGAGATGCGAAGTGCAAGGACGTGATTCACTCGCAAGCGTACAGTGTCATCGAGAAGGATATCGATGAGGCGATTGAGAAGGAGAAGGTGGTCAAGGCGAAGGAGGAGTCGGATGAGGGTGGAGAGAGCCCGGCGATGGGTGGAAGAGCAGCGGTTATTAAGAGAAATGTGAGTTTTTGTGTTAAAGAAGCTTCTAGAACCCTCCAAAGCTTAGCTTCTAGAATCTGCTAGATCAGTCTAGAATCCTTCTGAAGCTTCTAGAACTGTCTAGAGCTCTCTAGGATCGTTCTGAAGCATCTTGGATCCTCTCGAATCCTCTAAAGCTATATAGGATCCTTCGGTAGCTTCTAGAACTGTCTAGAACTCTCTAGGCTCGTTTTCAAACTTCTAGGATTCTTCGGAAGCTTCTAGAACCGTCAAGAGCTCTTTAGGATCCTCTAGAGGCCTTTGGGAACCTTTGGAAGATTCTAGAATCCTTATGACGCTTCTCGGATCCTTTTGAAGGATCCAAAGTCGTTCGGAAGCTTCTAAAGATCTCTAAGATCCTTCGAAAGCTTCTAGCAGCCTCTAGAGTTCTTTGGGATCCTTTCGAATTTCCCCAGTGCCTTCTGGACACACCTACGCCTTTTTATGATCTATCCCCCTCTCATTTTCCAGGAATCCGAAGTGGAAATGGAGGACGTCGAAGTCGACGGTGTCAAGTATGTGGCGCCGTGCTACGCCTACATCGCGCGTGCCGACGAGAAGAAGACTCCCCTCCACATATTTCGAATCGAGCGTACGTTCAAAGACGAAACTGGCGAGAAGGCTCTTCAAGGATTCTGGGTCTAT</canonical>
            <polymorphic>ATTCACAATGGACCAAATTAAAATCAATATCGATAAGTGTCGGTATAGACGGCTCGACAAACTTCAAAAGGACTTTTTCGACTTGTTCGAAACAGCAAGAGAGTTGGCGAAGCTCGAATCACCGATCTATGAAGCGGCGTGTCAGTTGCAGAAGGCGTTCATTGTGGAGAGAGATGCGAAGTGCAAGGACGTGATTCACTCGCAAGCGTACAGTGTCATCGAGAAGGATATCGATGAGGCGATTGAGAAGGAGAAGGTGGTCAAGGCGAAGGAGGAGTCGGATGAGGGTGGAGAGAGCCCGGCGATGGGTGGAAGAGCAGCGGTTATTAAGAGAAATGTGAGTTTTTGTGTTAAAGAAGCTTCTAGAACCCTCCAAAGCTTAGCTTCTAGAATCTGCTAGATCAGTCTAGAATCCTTCTGAAGCTTCTAGAACTGTCTAGAGCTCTCTAGGATCGTTCTGAAGCATCTTGGATCCTCTCGAATCCTCTAAAGCTATATARGATCCTTCGGTAGCTTCTAGAACTGTCTAGAACTCTCTAGGCTCGTTTTCAAACTTCTAGGATTCTTCGGAAGCTTCTAGAACCGTCAAGAGCTCTTTAGGATCCTCTAGAGGCCTTTGGGAACCTTTGGAAGATTCTAGAATCCTTATGACGCTTCTCGGATCCTTTTGAAGGATCCAAAGTCGTTCGGAAGCTTCTAAAGATCTCTAAGATCCTTCGAAAGCTTCTAGCAGCCTCTAGAGTTCTTTGGGATCCTTTCGAATTTCCCCAGTGCCTTCTGGACACACCTACGCCTTTTTATGATCTATCCCCCTCTCATTTTCCAGGAATCCGAAGTGGAAATGGAGGACGTCGAAGTCGACGGTGTCAAGTATGTGGCGCCGTGCTACGCCTACATCGCGCGTGCCGACGAGAAGAAGACTCCCCTCCACATATTTCGAATCGAGCGTACGTTCAAAGACGAAACTGGCGAGAAGGCTCTTCAAGGATTCTGGGTCTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGATCC</site>
                <isoschizomers>
                    <enzyme>BamHI</enzyme>
                </isoschizomers>
                <canonical_bands>470 250 100 77 60 30 13</canonical_bands>
                <polymorphic_bands>470 250 130 77 60 13</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>472 127 121 100 77 40 30 20 13</canonical_bands>
                <polymorphic_bands>472 130 127 121 77 40 20 13</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>470 250 100 60 40 30 28 13 9</canonical_bands>
                <polymorphic_bands>470 250 130 60 40 28 13 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAATGTGAGTTTTTGTGTTAAA</pcr_primer_p1>
		<pcr_primer_p2>AATGAGAGGGGGATAGATCA</pcr_primer_p2>
		<pcr_amplicon_size>489</pcr_amplicon_size>
		<canonical_amplicon>AGAAATGTGAGTTTTTGTGTTAAAGAAGCTTCTAGAACCCTCCAAAGCTTAGCTTCTAGAATCTGCTAGATCAGTCTAGAATCCTTCTGAAGCTTCTAGAACTGTCTAGAGCTCTCTAGGATCGTTCTGAAGCATCTTGGATCCTCTCGAATCCTCTAAAGCTATATAGGATCCTTCGGTAGCTTCTAGAACTGTCTAGAACTCTCTAGGCTCGTTTTCAAACTTCTAGGATTCTTCGGAAGCTTCTAGAACCGTCAAGAGCTCTTTAGGATCCTCTAGAGGCCTTTGGGAACCTTTGGAAGATTCTAGAATCCTTATGACGCTTCTCGGATCCTTTTGAAGGATCCAAAGTCGTTCGGAAGCTTCTAAAGATCTCTAAGATCCTTCGAAAGCTTCTAGCAGCCTCTAGAGTTCTTTGGGATCCTTTCGAATTTCCCCAGTGCCTTCTGGACACACCTACGCCTTTTTATGATCTATCCCCCTCTCATT</canonical_amplicon>
		<polymorphic_amplicon>AGAAATGTGAGTTTTTGTGTTAAAGAAGCTTCTAGAACCCTCCAAAGCTTAGCTTCTAGAATCTGCTAGATCAGTCTAGAATCCTTCTGAAGCTTCTAGAACTGTCTAGAGCTCTCTAGGATCGTTCTGAAGCATCTTGGATCCTCTCGAATCCTCTAAAGCTATATARGATCCTTCGGTAGCTTCTAGAACTGTCTAGAACTCTCTAGGCTCGTTTTCAAACTTCTAGGATTCTTCGGAAGCTTCTAGAACCGTCAAGAGCTCTTTAGGATCCTCTAGAGGCCTTTGGGAACCTTTGGAAGATTCTAGAATCCTTATGACGCTTCTCGGATCCTTTTGAAGGATCCAAAGTCGTTCGGAAGCTTCTAAAGATCTCTAAGATCCTTCGAAAGCTTCTAGCAGCCTCTAGAGTTCTTTGGGATCCTTTCGAATTTCCCCAGTGCCTTCTGGACACACCTACGCCTTTTTATGATCTATCCCCCTCTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23608</snp_id>
        <super_contig>c000100517.Contig2</super_contig>
        <contig_pos>48268</contig_pos>
        <strand></strand>
        <context>tcgttttcaa[A/G]cttctaggat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCTTCGGTAGCTTCTAGAACTGTCTAGAACTCTCTAGGCTCGTTTTCAA</left_flank>
        <right_flank>CTTCTAGGATTCTTCGGAAGCTTCTAGAACCGTCAAGAGCTCTTTAGGAT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGACAAACTTCAAAAGGACTTTTTCGACTTGTTCGAAACAGCAAGAGAGTTGGCGAAGCTCGAATCACCGATCTATGAAGCGGCGTGTCAGTTGCAGAAGGCGTTCATTGTGGAGAGAGATGCGAAGTGCAAGGACGTGATTCACTCGCAAGCGTACAGTGTCATCGAGAAGGATATCGATGAGGCGATTGAGAAGGAGAAGGTGGTCAAGGCGAAGGAGGAGTCGGATGAGGGTGGAGAGAGCCCGGCGATGGGTGGAAGAGCAGCGGTTATTAAGAGAAATGTGAGTTTTTGTGTTAAAGAAGCTTCTAGAACCCTCCAAAGCTTAGCTTCTAGAATCTGCTAGATCAGTCTAGAATCCTTCTGAAGCTTCTAGAACTGTCTAGAGCTCTCTAGGATCGTTCTGAAGCATCTTGGATCCTCTCGAATCCTCTAAAGCTATATAGGATCCTTCGGTAGCTTCTAGAACTGTCTAGAACTCTCTAGGCTCGTTTTCAAACTTCTAGGATTCTTCGGAAGCTTCTAGAACCGTCAAGAGCTCTTTAGGATCCTCTAGAGGCCTTTGGGAACCTTTGGAAGATTCTAGAATCCTTATGACGCTTCTCGGATCCTTTTGAAGGATCCAAAGTCGTTCGGAAGCTTCTAAAGATCTCTAAGATCCTTCGAAAGCTTCTAGCAGCCTCTAGAGTTCTTTGGGATCCTTTCGAATTTCCCCAGTGCCTTCTGGACACACCTACGCCTTTTTATGATCTATCCCCCTCTCATTTTCCAGGAATCCGAAGTGGAAATGGAGGACGTCGAAGTCGACGGTGTCAAGTATGTGGCGCCGTGCTACGCCTACATCGCGCGTGCCGACGAGAAGAAGACTCCCCTCCACATATTTCGAATCGAGCGTACGTTCAAAGACGAAACTGGCGAGAAGGCTCTTCAAGGATTCTGGGTCTATCGTCCCGACGAGACACTTCATCTGGCTAGCCGCAAATTCATCAAACAAGAAGT</canonical>
            <polymorphic>TCGACAAACTTCAAAAGGACTTTTTCGACTTGTTCGAAACAGCAAGAGAGTTGGCGAAGCTCGAATCACCGATCTATGAAGCGGCGTGTCAGTTGCAGAAGGCGTTCATTGTGGAGAGAGATGCGAAGTGCAAGGACGTGATTCACTCGCAAGCGTACAGTGTCATCGAGAAGGATATCGATGAGGCGATTGAGAAGGAGAAGGTGGTCAAGGCGAAGGAGGAGTCGGATGAGGGTGGAGAGAGCCCGGCGATGGGTGGAAGAGCAGCGGTTATTAAGAGAAATGTGAGTTTTTGTGTTAAAGAAGCTTCTAGAACCCTCCAAAGCTTAGCTTCTAGAATCTGCTAGATCAGTCTAGAATCCTTCTGAAGCTTCTAGAACTGTCTAGAGCTCTCTAGGATCGTTCTGAAGCATCTTGGATCCTCTCGAATCCTCTAAAGCTATATAGGATCCTTCGGTAGCTTCTAGAACTGTCTAGAACTCTCTAGGCTCGTTTTCAARCTTCTAGGATTCTTCGGAAGCTTCTAGAACCGTCAAGAGCTCTTTAGGATCCTCTAGAGGCCTTTGGGAACCTTTGGAAGATTCTAGAATCCTTATGACGCTTCTCGGATCCTTTTGAAGGATCCAAAGTCGTTCGGAAGCTTCTAAAGATCTCTAAGATCCTTCGAAAGCTTCTAGCAGCCTCTAGAGTTCTTTGGGATCCTTTCGAATTTCCCCAGTGCCTTCTGGACACACCTACGCCTTTTTATGATCTATCCCCCTCTCATTTTCCAGGAATCCGAAGTGGAAATGGAGGACGTCGAAGTCGACGGTGTCAAGTATGTGGCGCCGTGCTACGCCTACATCGCGCGTGCCGACGAGAAGAAGACTCCCCTCCACATATTTCGAATCGAGCGTACGTTCAAAGACGAAACTGGCGAGAAGGCTCTTCAAGGATTCTGGGTCTATCGTCCCGACGAGACACTTCATCTGGCTAGCCGCAAATTCATCAAACAAGAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAATGTGAGTTTTTGTGTTAAA</pcr_primer_p1>
		<pcr_primer_p2>AATGAGAGGGGGATAGATCA</pcr_primer_p2>
		<pcr_amplicon_size>489</pcr_amplicon_size>
		<canonical_amplicon>AGAAATGTGAGTTTTTGTGTTAAAGAAGCTTCTAGAACCCTCCAAAGCTTAGCTTCTAGAATCTGCTAGATCAGTCTAGAATCCTTCTGAAGCTTCTAGAACTGTCTAGAGCTCTCTAGGATCGTTCTGAAGCATCTTGGATCCTCTCGAATCCTCTAAAGCTATATAGGATCCTTCGGTAGCTTCTAGAACTGTCTAGAACTCTCTAGGCTCGTTTTCAAACTTCTAGGATTCTTCGGAAGCTTCTAGAACCGTCAAGAGCTCTTTAGGATCCTCTAGAGGCCTTTGGGAACCTTTGGAAGATTCTAGAATCCTTATGACGCTTCTCGGATCCTTTTGAAGGATCCAAAGTCGTTCGGAAGCTTCTAAAGATCTCTAAGATCCTTCGAAAGCTTCTAGCAGCCTCTAGAGTTCTTTGGGATCCTTTCGAATTTCCCCAGTGCCTTCTGGACACACCTACGCCTTTTTATGATCTATCCCCCTCTCATT</canonical_amplicon>
		<polymorphic_amplicon>AGAAATGTGAGTTTTTGTGTTAAAGAAGCTTCTAGAACCCTCCAAAGCTTAGCTTCTAGAATCTGCTAGATCAGTCTAGAATCCTTCTGAAGCTTCTAGAACTGTCTAGAGCTCTCTAGGATCGTTCTGAAGCATCTTGGATCCTCTCGAATCCTCTAAAGCTATATAGGATCCTTCGGTAGCTTCTAGAACTGTCTAGAACTCTCTAGGCTCGTTTTCAARCTTCTAGGATTCTTCGGAAGCTTCTAGAACCGTCAAGAGCTCTTTAGGATCCTCTAGAGGCCTTTGGGAACCTTTGGAAGATTCTAGAATCCTTATGACGCTTCTCGGATCCTTTTGAAGGATCCAAAGTCGTTCGGAAGCTTCTAAAGATCTCTAAGATCCTTCGAAAGCTTCTAGCAGCCTCTAGAGTTCTTTGGGATCCTTTCGAATTTCCCCAGTGCCTTCTGGACACACCTACGCCTTTTTATGATCTATCCCCCTCTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23609</snp_id>
        <super_contig>c000100517.Contig2</super_contig>
        <contig_pos>48418</contig_pos>
        <strand></strand>
        <context>gcttctaaag[A/G]tctctaagat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTTCTCGGATCCTTTTGAAGGATCCAAAGTCGTTCGGAAGCTTCTAAAG</left_flank>
        <right_flank>TCTCTAAGATCCTTCGAAAGCTTCTAGCAGCCTCTAGAGTTCTTTGGGAT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCGTACAGTGTCATCGAGAAGGATATCGATGAGGCGATTGAGAAGGAGAAGGTGGTCAAGGCGAAGGAGGAGTCGGATGAGGGTGGAGAGAGCCCGGCGATGGGTGGAAGAGCAGCGGTTATTAAGAGAAATGTGAGTTTTTGTGTTAAAGAAGCTTCTAGAACCCTCCAAAGCTTAGCTTCTAGAATCTGCTAGATCAGTCTAGAATCCTTCTGAAGCTTCTAGAACTGTCTAGAGCTCTCTAGGATCGTTCTGAAGCATCTTGGATCCTCTCGAATCCTCTAAAGCTATATAGGATCCTTCGGTAGCTTCTAGAACTGTCTAGAACTCTCTAGGCTCGTTTTCAAACTTCTAGGATTCTTCGGAAGCTTCTAGAACCGTCAAGAGCTCTTTAGGATCCTCTAGAGGCCTTTGGGAACCTTTGGAAGATTCTAGAATCCTTATGACGCTTCTCGGATCCTTTTGAAGGATCCAAAGTCGTTCGGAAGCTTCTAAAGATCTCTAAGATCCTTCGAAAGCTTCTAGCAGCCTCTAGAGTTCTTTGGGATCCTTTCGAATTTCCCCAGTGCCTTCTGGACACACCTACGCCTTTTTATGATCTATCCCCCTCTCATTTTCCAGGAATCCGAAGTGGAAATGGAGGACGTCGAAGTCGACGGTGTCAAGTATGTGGCGCCGTGCTACGCCTACATCGCGCGTGCCGACGAGAAGAAGACTCCCCTCCACATATTTCGAATCGAGCGTACGTTCAAAGACGAAACTGGCGAGAAGGCTCTTCAAGGATTCTGGGTCTATCGTCCCGACGAGACACTTCATCTGGCTAGCCGCAAATTCATCAAACAAGAAGTCTTTCTGACTCCGTTCCGAGGCACGATTCTTGCCGAACGACTGCGTGGACAGTGTGCAGTTGTGTCGCTTGCCACGTATTCTACCAAGATTCTGAGCGATTTCGCTGAAGAAGACGTCTATCTGTGTGAATACAAGTATCATGGAAAACC</canonical>
            <polymorphic>AAGCGTACAGTGTCATCGAGAAGGATATCGATGAGGCGATTGAGAAGGAGAAGGTGGTCAAGGCGAAGGAGGAGTCGGATGAGGGTGGAGAGAGCCCGGCGATGGGTGGAAGAGCAGCGGTTATTAAGAGAAATGTGAGTTTTTGTGTTAAAGAAGCTTCTAGAACCCTCCAAAGCTTAGCTTCTAGAATCTGCTAGATCAGTCTAGAATCCTTCTGAAGCTTCTAGAACTGTCTAGAGCTCTCTAGGATCGTTCTGAAGCATCTTGGATCCTCTCGAATCCTCTAAAGCTATATAGGATCCTTCGGTAGCTTCTAGAACTGTCTAGAACTCTCTAGGCTCGTTTTCAAACTTCTAGGATTCTTCGGAAGCTTCTAGAACCGTCAAGAGCTCTTTAGGATCCTCTAGAGGCCTTTGGGAACCTTTGGAAGATTCTAGAATCCTTATGACGCTTCTCGGATCCTTTTGAAGGATCCAAAGTCGTTCGGAAGCTTCTAAAGRTCTCTAAGATCCTTCGAAAGCTTCTAGCAGCCTCTAGAGTTCTTTGGGATCCTTTCGAATTTCCCCAGTGCCTTCTGGACACACCTACGCCTTTTTATGATCTATCCCCCTCTCATTTTCCAGGAATCCGAAGTGGAAATGGAGGACGTCGAAGTCGACGGTGTCAAGTATGTGGCGCCGTGCTACGCCTACATCGCGCGTGCCGACGAGAAGAAGACTCCCCTCCACATATTTCGAATCGAGCGTACGTTCAAAGACGAAACTGGCGAGAAGGCTCTTCAAGGATTCTGGGTCTATCGTCCCGACGAGACACTTCATCTGGCTAGCCGCAAATTCATCAAACAAGAAGTCTTTCTGACTCCGTTCCGAGGCACGATTCTTGCCGAACGACTGCGTGGACAGTGTGCAGTTGTGTCGCTTGCCACGTATTCTACCAAGATTCTGAGCGATTTCGCTGAAGAAGACGTCTATCTGTGTGAATACAAGTATCATGGAAAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>402 196 100 60 51 51 40 30 28 20 13 9</canonical_bands>
                <polymorphic_bands>402 196 100 60 51 51 40 37 30 20 13</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>453 267 100 60 40 30 28 13 9</canonical_bands>
                <polymorphic_bands>453 267 100 60 40 37 30 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAATGTGAGTTTTTGTGTTAAA</pcr_primer_p1>
		<pcr_primer_p2>AATGAGAGGGGGATAGATCA</pcr_primer_p2>
		<pcr_amplicon_size>489</pcr_amplicon_size>
		<canonical_amplicon>AGAAATGTGAGTTTTTGTGTTAAAGAAGCTTCTAGAACCCTCCAAAGCTTAGCTTCTAGAATCTGCTAGATCAGTCTAGAATCCTTCTGAAGCTTCTAGAACTGTCTAGAGCTCTCTAGGATCGTTCTGAAGCATCTTGGATCCTCTCGAATCCTCTAAAGCTATATAGGATCCTTCGGTAGCTTCTAGAACTGTCTAGAACTCTCTAGGCTCGTTTTCAAACTTCTAGGATTCTTCGGAAGCTTCTAGAACCGTCAAGAGCTCTTTAGGATCCTCTAGAGGCCTTTGGGAACCTTTGGAAGATTCTAGAATCCTTATGACGCTTCTCGGATCCTTTTGAAGGATCCAAAGTCGTTCGGAAGCTTCTAAAGATCTCTAAGATCCTTCGAAAGCTTCTAGCAGCCTCTAGAGTTCTTTGGGATCCTTTCGAATTTCCCCAGTGCCTTCTGGACACACCTACGCCTTTTTATGATCTATCCCCCTCTCATT</canonical_amplicon>
		<polymorphic_amplicon>AGAAATGTGAGTTTTTGTGTTAAAGAAGCTTCTAGAACCCTCCAAAGCTTAGCTTCTAGAATCTGCTAGATCAGTCTAGAATCCTTCTGAAGCTTCTAGAACTGTCTAGAGCTCTCTAGGATCGTTCTGAAGCATCTTGGATCCTCTCGAATCCTCTAAAGCTATATAGGATCCTTCGGTAGCTTCTAGAACTGTCTAGAACTCTCTAGGCTCGTTTTCAAACTTCTAGGATTCTTCGGAAGCTTCTAGAACCGTCAAGAGCTCTTTAGGATCCTCTAGAGGCCTTTGGGAACCTTTGGAAGATTCTAGAATCCTTATGACGCTTCTCGGATCCTTTTGAAGGATCCAAAGTCGTTCGGAAGCTTCTAAAGRTCTCTAAGATCCTTCGAAAGCTTCTAGCAGCCTCTAGAGTTCTTTGGGATCCTTTCGAATTTCCCCAGTGCCTTCTGGACACACCTACGCCTTTTTATGATCTATCCCCCTCTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23610</snp_id>
        <super_contig>c000100517.Contig2</super_contig>
        <contig_pos>53465</contig_pos>
        <strand></strand>
        <context>AGAATGGAAC[C/G]GTTGGACAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCGCCACCACAGCAGGTACACCACGTCAATGGACACCATCAGAATGGAAC</left_flank>
        <right_flank>GTTGGACAACATCTTCAGGCACAGTTGATGAATGGTGGAGGGTTGCATCA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACGAGGAGTACACGACTCGTATTTTCTCAATAACGAGTTTTGAACTCCTCATGGACAAGTTGTGGCGCAAAATTTGAAATTTTTGAAGAATTAGAGATGTATGTGGTATTTTTATCTTCCTTCTCCTCCTTCTATCATTGGAGCGTAATTGCTCATTTCCTTGACATTTTAATAAAACCCTCCTCTTCTTTCAGTGGACAGCGACCAACAGTTCGTGTGCATGTGGATGACGTGTCTTCGGAATCGAAAAGACGGAAAACCGTTCCCCTCACTGCCACGTCTTCATCGTCACATCAAGGAGAAGCACATGCCAACGTCGGCCAAGACGATTCATCAAACGCAGCTCGGCAAGAACTTCTATCGAGTAATGAGTGCTCCGGGCGAGCCGACACGTGTCAGTCATCAACCGTATGGAAACGCACCGACGGGACCGCCACAGACGATGCAGGCGCCACCACAGCAGGTACACCACGTCAATGGACACCATCAGAATGGAACCGTTGGACAACATCTTCAGGCACAGTTGATGAATGGTGGAGGGTTGCATCAGCAACAGCATGTAGATCATTCACACCATCAGCAGCAGCAGCATTATCAGGTAGGTCCTACTGGAGGAATTGGGTTCTTATCAAGGCTGTAAGCCCCTGTTCCCTACAGCCTTGGATCTTATATTCCTAGAATCCTCCAATATCGATTTATTGATTTTTTACAGCCTGGCCATTCAGCCCAACAGAACGGAATGTACCAACAGGGGCCATCATCCTCCCAGCAACACCACCATCCACAGCATCCACAGCAGCAGCACCCACAACACCAACAATACCATCAAGGACCACCACCACTACCACCCCAACAACAGCAAATGATGCAAATGCAACAGGGACAACAACCCCAGCAGCAGCAAATGCAACAAGTCCCACAAATCGCCGACGTCGGAAGGACCGTGGTCCGATGTGTGGTGCCCGCGTTCATCGCGCCGCCCAATCAGATCCACACCAA</canonical>
            <polymorphic>CACGAGGAGTACACGACTCGTATTTTCTCAATAACGAGTTTTGAACTCCTCATGGACAAGTTGTGGCGCAAAATTTGAAATTTTTGAAGAATTAGAGATGTATGTGGTATTTTTATCTTCCTTCTCCTCCTTCTATCATTGGAGCGTAATTGCTCATTTCCTTGACATTTTAATAAAACCCTCCTCTTCTTTCAGTGGACAGCGACCAACAGTTCGTGTGCATGTGGATGACGTGTCTTCGGAATCGAAAAGACGGAAAACCGTTCCCCTCACTGCCACGTCTTCATCGTCACATCAAGGAGAAGCACATGCCAACGTCGGCCAAGACGATTCATCAAACGCAGCTCGGCAAGAACTTCTATCGAGTAATGAGTGCTCCGGGCGAGCCGACACGTGTCAGTCATCAACCGTATGGAAACGCACCGACGGGACCGCCACAGACGATGCAGGCGCCACCACAGCAGGTACACCACGTCAATGGACACCATCAGAATGGAACSGTTGGACAACATCTTCAGGCACAGTTGATGAATGGTGGAGGGTTGCATCAGCAACAGCATGTAGATCATTCACACCATCAGCAGCAGCAGCATTATCAGGTAGGTCCTACTGGAGGAATTGGGTTCTTATCAAGGCTGTAAGCCCCTGTTCCCTACAGCCTTGGATCTTATATTCCTAGAATCCTCCAATATCGATTTATTGATTTTTTACAGCCTGGCCATTCAGCCCAACAGAACGGAATGTACCAACAGGGGCCATCATCCTCCCAGCAACACCACCATCCACAGCATCCACAGCAGCAGCACCCACAACACCAACAATACCATCAAGGACCACCACCACTACCACCCCAACAACAGCAAATGATGCAAATGCAACAGGGACAACAACCCCAGCAGCAGCAAATGCAACAAGTCCCACAAATCGCCGACGTCGGAAGGACCGTGGTCCGATGTGTGGTGCCCGCGTTCATCGCGCCGCCCAATCAGATCCACACCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>430 257 207 46 39 21</canonical_bands>
                <polymorphic_bands>430 303 207 39 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAAGAACTTCTATCGAGTAATG</pcr_primer_p1>
		<pcr_primer_p2>GCTGATGGTGTGAATGATCTA</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>GCAAGAACTTCTATCGAGTAATGAGTGCTCCGGGCGAGCCGACACGTGTCAGTCATCAACCGTATGGAAACGCACCGACGGGACCGCCACAGACGATGCAGGCGCCACCACAGCAGGTACACCACGTCAATGGACACCATCAGAATGGAACCGTTGGACAACATCTTCAGGCACAGTTGATGAATGGTGGAGGGTTGCATCAGCAACAGCATGTAGATCATTCACACCATCAGC</canonical_amplicon>
		<polymorphic_amplicon>GCAAGAACTTCTATCGAGTAATGAGTGCTCCGGGCGAGCCGACACGTGTCAGTCATCAACCGTATGGAAACGCACCGACGGGACCGCCACAGACGATGCAGGCGCCACCACAGCAGGTACACCACGTCAATGGACACCATCAGAATGGAACSGTTGGACAACATCTTCAGGCACAGTTGATGAATGGTGGAGGGTTGCATCAGCAACAGCATGTAGATCATTCACACCATCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23611</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>44249</contig_pos>
        <strand></strand>
        <context>ttgcccataa[G/T]tctgaytgtt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TACGGTAGTTGTCGTTGTGGGTCCTTCGGTCACGGCCACCTTGCCCATAA</left_flank>
        <right_flank>TCTGACTGTTTATACCAGAATAATATCACGACAGATTTAATTTACTGTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTCAGGCAAAAAATGTTCAAATTTCTACTTGGATTCAATGTCACTGGATTTTATGAACGAGAGATGACTGCTGAGTACACTTTAGAGTATATGATTTTGTATACGATAACAATGATTTTGGCACTTTTTGTGACAAGTTTTGGAATTCGAATTTCGTTATCGATAAGGTGGGAAATTTTATTAATTCATAGGATTATGCCTGTATAAAACATTAAAGCTGTGGAAGAGAAACTCCGGTGGTCGTGGCCGAGAGTCACACAACGATAACTACCGTAACCTAAAACAAACTTTCATTTTCTGGAAATATTTTCTAGATTTTCGTCCGTTTTCTGCCAGTTTTTCATAATTAAAAAATTTCATTTTCCGACTTGTTGGTGAAAAGGAAACTTAGAAAAACCCAGTGAAAACCAAGAAAATAAATCCTGAAAATAAACTTATTTTCAGGTTACGGTAGTTGTCGTTGTGGGTCCTTCGGTCACGGCCACCTTGCCCATAAGTCTGACTGTTTATACCAGAATAATATCACGACAGATTTAATTTACTGTTAATTTTCAGTGCCTACCACCTAAACGTAAACCGTCTGTTTTGCTTTGCTCTCAGTATGTGGCTCATCATTTTTATGAGCAAAATATGTGTTTTTCTGTATCATTTACGAGCAGTAAACATCTCTGATCGGACTGATTCTGCTTTAGTTTTCCTTCATATTTCCGCATTCACCAGATACTTTTATTTCTATTTCGGATCTGCTACTCCTTTGGCTTCAACTGTGGAGAGGGGTTTTGCAACACTTTTCTTATCGTGAGTTTGAAAAAAAATTTATAGCCTGAAGTAAAAAATCATACTTCAGAAGTTACGAACAGTCGCCACAGCTTCCAATCTTAGTACTGATCATTTCGATGAACCTTTTACTAGCATTGTTTTTCACAATTCTTACTGTATTCTTCGAGATTCCATTCAGTTTCGTCATTGTCGTTCCATTTGCCTACTTACTCATCTG</canonical>
            <polymorphic>AATTTCAGGCAAAAAATGTTCAAATTTCTACTTGGATTCAATGTCACTGGATTTTATGAACGAGAGATGACTGCTGAGTACACTTTAGAGTATATGATTTTGTATACGATAACAATGATTTTGGCACTTTTTGTGACAAGTTTTGGAATTCGAATTTCGTTATCGATAAGGTGGGAAATTTTATTAATTCATAGGATTATGCCTGTATAAAACATTAAAGCTGTGGAAGAGAAACTCCGGTGGTCGTGGCCGAGAGTCACACAACGATAACTACCGTAACCTAAAACAAACTTTCATTTTCTGGAAATATTTTCTAGATTTTCGTCCGTTTTCTGCCAGTTTTTCATAATTAAAAAATTTCATTTTCCGACTTGTTGGTGAAAAGGAAACTTAGAAAAACCCAGTGAAAACCAAGAAAATAAATCCTGAAAATAAACTTATTTTCAGGTTACGGTAGTTGTCGTTGTGGGTCCTTCGGTCACGGCCACCTTGCCCATAAKTCTGACTGTTTATACCAGAATAATATCACGACAGATTTAATTTACTGTTAATTTTCAGTGCCTACCACCTAAACGTAAACCGTCTGTTTTGCTTTGCTCTCAGTATGTGGCTCATCATTTTTATGAGCAAAATATGTGTTTTTCTGTATCATTTACGAGCAGTAAACATCTCTGATCGGACTGATTCTGCTTTAGTTTTCCTTCATATTTCCGCATTCACCAGATACTTTTATTTCTATTTCGGATCTGCTACTCCTTTGGCTTCAACTGTGGAGAGGGGTTTTGCAACACTTTTCTTATCGTGAGTTTGAAAAAAAATTTATAGCCTGAAGTAAAAAATCATACTTCAGAAGTTACGAACAGTCGCCACAGCTTCCAATCTTAGTACTGATCATTTCGATGAACCTTTTACTAGCATTGTTTTTCACAATTCTTACTGTATTCTTCGAGATTCCATTCAGTTTCGTCATTGTCGTTCCATTTGCCTACTTACTCATCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATAAGGTGGGAAATTTTAT</pcr_primer_p1>
		<pcr_primer_p2>GTGGTAGGCACTGAAAATTAAC</pcr_primer_p2>
		<pcr_amplicon_size>405</pcr_amplicon_size>
		<canonical_amplicon>CGATAAGGTGGGAAATTTTATTAATTCATAGGATTATGCCTGTATAAAACATTAAAGCTGTGGAAGAGAAACTCCGGTGGTCGTGGCCGAGAGTCACACAACGATAACTACCGTAACCTAAAACAAACTTTCATTTTCTGGAAATATTTTCTAGATTTTCGTCCGTTTTCTGCCAGTTTTTCATAATTAAAAAATTTCATTTTCCGACTTGTTGGTGAAAAGGAAACTTAGAAAAACCCAGTGAAAACCAAGAAAATAAATCCTGAAAATAAACTTATTTTCAGGTTACGGTAGTTGTCGTTGTGGGTCCTTCGGTCACGGCCACCTTGCCCATAAGTCTGACTGTTTATACCAGAATAATATCACGACAGATTTAATTTACTGTTAATTTTCAGTGCCTACCAC</canonical_amplicon>
		<polymorphic_amplicon>CGATAAGGTGGGAAATTTTATTAATTCATAGGATTATGCCTGTATAAAACATTAAAGCTGTGGAAGAGAAACTCCGGTGGTCGTGGCCGAGAGTCACACAACGATAACTACCGTAACCTAAAACAAACTTTCATTTTCTGGAAATATTTTCTAGATTTTCGTCCGTTTTCTGCCAGTTTTTCATAATTAAAAAATTTCATTTTCCGACTTGTTGGTGAAAAGGAAACTTAGAAAAACCCAGTGAAAACCAAGAAAATAAATCCTGAAAATAAACTTATTTTCAGGTTACGGTAGTTGTCGTTGTGGGTCCTTCGGTCACGGCCACCTTGCCCATAAKTCTGACTGTTTATACCAGAATAATATCACGACAGATTTAATTTACTGTTAATTTTCAGTGCCTACCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23612</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>44255</contig_pos>
        <strand></strand>
        <context>ataaktctga[C/T]tgtttatacc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTTGTCGTTGTGGGTCCTTCGGTCACGGCCACCTTGCCCATAAGTCTGA</left_flank>
        <right_flank>TGTTTATACCAGAATAATATCACGACAGATTTAATTTACTGTTAATTTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGCAAAAAATGTTCAAATTTCTACTTGGATTCAATGTCACTGGATTTTATGAACGAGAGATGACTGCTGAGTACACTTTAGAGTATATGATTTTGTATACGATAACAATGATTTTGGCACTTTTTGTGACAAGTTTTGGAATTCGAATTTCGTTATCGATAAGGTGGGAAATTTTATTAATTCATAGGATTATGCCTGTATAAAACATTAAAGCTGTGGAAGAGAAACTCCGGTGGTCGTGGCCGAGAGTCACACAACGATAACTACCGTAACCTAAAACAAACTTTCATTTTCTGGAAATATTTTCTAGATTTTCGTCCGTTTTCTGCCAGTTTTTCATAATTAAAAAATTTCATTTTCCGACTTGTTGGTGAAAAGGAAACTTAGAAAAACCCAGTGAAAACCAAGAAAATAAATCCTGAAAATAAACTTATTTTCAGGTTACGGTAGTTGTCGTTGTGGGTCCTTCGGTCACGGCCACCTTGCCCATAAGTCTGACTGTTTATACCAGAATAATATCACGACAGATTTAATTTACTGTTAATTTTCAGTGCCTACCACCTAAACGTAAACCGTCTGTTTTGCTTTGCTCTCAGTATGTGGCTCATCATTTTTATGAGCAAAATATGTGTTTTTCTGTATCATTTACGAGCAGTAAACATCTCTGATCGGACTGATTCTGCTTTAGTTTTCCTTCATATTTCCGCATTCACCAGATACTTTTATTTCTATTTCGGATCTGCTACTCCTTTGGCTTCAACTGTGGAGAGGGGTTTTGCAACACTTTTCTTATCGTGAGTTTGAAAAAAAATTTATAGCCTGAAGTAAAAAATCATACTTCAGAAGTTACGAACAGTCGCCACAGCTTCCAATCTTAGTACTGATCATTTCGATGAACCTTTTACTAGCATTGTTTTTCACAATTCTTACTGTATTCTTCGAGATTCCATTCAGTTTCGTCATTGTCGTTCCATTTGCCTACTTACTCATCTGCTTCAC</canonical>
            <polymorphic>AGGCAAAAAATGTTCAAATTTCTACTTGGATTCAATGTCACTGGATTTTATGAACGAGAGATGACTGCTGAGTACACTTTAGAGTATATGATTTTGTATACGATAACAATGATTTTGGCACTTTTTGTGACAAGTTTTGGAATTCGAATTTCGTTATCGATAAGGTGGGAAATTTTATTAATTCATAGGATTATGCCTGTATAAAACATTAAAGCTGTGGAAGAGAAACTCCGGTGGTCGTGGCCGAGAGTCACACAACGATAACTACCGTAACCTAAAACAAACTTTCATTTTCTGGAAATATTTTCTAGATTTTCGTCCGTTTTCTGCCAGTTTTTCATAATTAAAAAATTTCATTTTCCGACTTGTTGGTGAAAAGGAAACTTAGAAAAACCCAGTGAAAACCAAGAAAATAAATCCTGAAAATAAACTTATTTTCAGGTTACGGTAGTTGTCGTTGTGGGTCCTTCGGTCACGGCCACCTTGCCCATAAGTCTGAYTGTTTATACCAGAATAATATCACGACAGATTTAATTTACTGTTAATTTTCAGTGCCTACCACCTAAACGTAAACCGTCTGTTTTGCTTTGCTCTCAGTATGTGGCTCATCATTTTTATGAGCAAAATATGTGTTTTTCTGTATCATTTACGAGCAGTAAACATCTCTGATCGGACTGATTCTGCTTTAGTTTTCCTTCATATTTCCGCATTCACCAGATACTTTTATTTCTATTTCGGATCTGCTACTCCTTTGGCTTCAACTGTGGAGAGGGGTTTTGCAACACTTTTCTTATCGTGAGTTTGAAAAAAAATTTATAGCCTGAAGTAAAAAATCATACTTCAGAAGTTACGAACAGTCGCCACAGCTTCCAATCTTAGTACTGATCATTTCGATGAACCTTTTACTAGCATTGTTTTTCACAATTCTTACTGTATTCTTCGAGATTCCATTCAGTTTCGTCATTGTCGTTCCATTTGCCTACTTACTCATCTGCTTCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>269 188 178 93 76 68 54 39 35</canonical_bands>
                <polymorphic_bands>269 188 178 93 93 76 68 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATAAGGTGGGAAATTTTAT</pcr_primer_p1>
		<pcr_primer_p2>GTGGTAGGCACTGAAAATTAAC</pcr_primer_p2>
		<pcr_amplicon_size>405</pcr_amplicon_size>
		<canonical_amplicon>CGATAAGGTGGGAAATTTTATTAATTCATAGGATTATGCCTGTATAAAACATTAAAGCTGTGGAAGAGAAACTCCGGTGGTCGTGGCCGAGAGTCACACAACGATAACTACCGTAACCTAAAACAAACTTTCATTTTCTGGAAATATTTTCTAGATTTTCGTCCGTTTTCTGCCAGTTTTTCATAATTAAAAAATTTCATTTTCCGACTTGTTGGTGAAAAGGAAACTTAGAAAAACCCAGTGAAAACCAAGAAAATAAATCCTGAAAATAAACTTATTTTCAGGTTACGGTAGTTGTCGTTGTGGGTCCTTCGGTCACGGCCACCTTGCCCATAAGTCTGACTGTTTATACCAGAATAATATCACGACAGATTTAATTTACTGTTAATTTTCAGTGCCTACCAC</canonical_amplicon>
		<polymorphic_amplicon>CGATAAGGTGGGAAATTTTATTAATTCATAGGATTATGCCTGTATAAAACATTAAAGCTGTGGAAGAGAAACTCCGGTGGTCGTGGCCGAGAGTCACACAACGATAACTACCGTAACCTAAAACAAACTTTCATTTTCTGGAAATATTTTCTAGATTTTCGTCCGTTTTCTGCCAGTTTTTCATAATTAAAAAATTTCATTTTCCGACTTGTTGGTGAAAAGGAAACTTAGAAAAACCCAGTGAAAACCAAGAAAATAAATCCTGAAAATAAACTTATTTTCAGGTTACGGTAGTTGTCGTTGTGGGTCCTTCGGTCACGGCCACCTTGCCCATAAGTCTGAYTGTTTATACCAGAATAATATCACGACAGATTTAATTTACTGTTAATTTTCAGTGCCTACCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23613</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>45513</contig_pos>
        <strand></strand>
        <context>aaacttgacc[A/G]tgtggggctc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTTGATATCTTTCACACAAACCGAGGTAAGTTAGCTCAAACTTGACC</left_flank>
        <right_flank>TGTGGGGCTCTTCCTTCACAAGTTTTACGGTCCTCCTATTACAGGTCTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAAGTGATTTTGTTACTTTAATAATTTAAAGTTTCGAAATTACAGTAATCCATTAATTGTGATTCCGATGACAACACTCTTCATTCCTGAATTCAAGAAACAAGCAAAGGCAGCAATGTTCAAAAGAATGCCGCTGGCAAGAAGTAGTGTGGATTCTCGCTATAGAAATTATCGAGAAGATCCCAATCAAGCTGATGTCTACTTTGATCTTTTCAAAAAGTCAATCAAGAAGAATAATTCTACGGATAGTCTTTCACCGCCTAACCAAATTAACTGAAAACCGAATAAATGTTCTTTTCAAATACTTGTCTCAAGAAGCATACCGTAAGACCTACAATAGGAGAGCTCCCTAACTTTTGACTTTGAATAAATTAATCTCGGTTCCTGTCAGAGATGTCAACTGATAAATTGTTTATCATAATGTTACCTAAACTTTATCAATTAACAGATTTTTGATATCTTTCACACAAACCGAGGTAAGTTAGCTCAAACTTGACCATGTGGGGCTCTTCCTTCACAAGTTTTACGGTCCTCCTATTACAGGTCTTTCCAGGAGCGCACGGACGCAGTCCCGATACGGAAAAATTTAGCTACTAGTTAGTCTGAATCCGAGACTATCACATAGGTCAGTCCTTCTGAAAGTCCAGTGGAAAAAGCAAAAAAGGAAAATAATAATTTTTCATCCGGGAAGAAACTGATGATAATTGATGAGATGAAAGAAAAAAGTAGTACAGAGATAATATAATTTTTGGTGACATTGAATATTGAATGCAAACAGAAAAATCTAATAAATAATCTACCGATTGATTGTGTTTTTGGAAGTGTTTGTAGTAGAAATTGGCTGAAAAACCGTTTAGTTCACATTTGCAGCCATTGTTGCTTTTTGAGATTCCATAATCGACCGAGGTGTTGAGCTGAGCAAGAATTCGACACGGAATCGTTCTCGAGCACCCAACTGACGATTTGGTTCACGTATCATTTGACGGAGCTGAAAATAGG</canonical>
            <polymorphic>GTAAGTGATTTTGTTACTTTAATAATTTAAAGTTTCGAAATTACAGTAATCCATTAATTGTGATTCCGATGACAACACTCTTCATTCCTGAATTCAAGAAACAAGCAAAGGCAGCAATGTTCAAAAGAATGCCGCTGGCAAGAAGTAGTGTGGATTCTCGCTATAGAAATTATCGAGAAGATCCCAATCAAGCTGATGTCTACTTTGATCTTTTCAAAAAGTCAATCAAGAAGAATAATTCTACGGATAGTCTTTCACCGCCTAACCAAATTAACTGAAAACCGAATAAATGTTCTTTTCAAATACTTGTCTCAAGAAGCATACCGTAAGACCTACAATAGGAGAGCTCCCTAACTTTTGACTTTGAATAAATTAATCTCGGTTCCTGTCAGAGATGTCAACTGATAAATTGTTTATCATAATGTTACCTAAACTTTATCAATTAACAGATTTTTGATATCTTTCACACAAACCGAGGTAAGTTAGCTCAAACTTGACCRTGTGGGGCTCTTCCTTCACAAGTTTTACGGTCCTCCTATTACAGGTCTTTCCAGGAGCGCACGGACGCAGTCCCGATACGGAAAAATTTAGCTACTAGTTAGTCTGAATCCGAGACTATCACATAGGTCAGTCCTTCTGAAAGTCCAGTGGAAAAAGCAAAAAAGGAAAATAATAATTTTTCATCCGGGAAGAAACTGATGATAATTGATGAGATGAAAGAAAAAAGTAGTACAGAGATAATATAATTTTTGGTGACATTGAATATTGAATGCAAACAGAAAAATCTAATAAATAATCTACCGATTGATTGTGTTTTTGGAAGTGTTTGTAGTAGAAATTGGCTGAAAAACCGTTTAGTTCACATTTGCAGCCATTGTTGCTTTTTGAGATTCCATAATCGACCGAGGTGTTGAGCTGAGCAAGAATTCGACACGGAATCGTTCTCGAGCACCCAACTGACGATTTGGTTCACGTATCATTTGACGGAGCTGAAAATAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAAATACTTGTCTCAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>CTGGAAAGACCTGTAATAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAAATACTTGTCTCAAGAAGCATACCGTAAGACCTACAATAGGAGAGCTCCCTAACTTTTGACTTTGAATAAATTAATCTCGGTTCCTGTCAGAGATGTCAACTGATAAATTGTTTATCATAATGTTACCTAAACTTTATCAATTAACAGATTTTTGATATCTTTCACACAAACCGAGGTAAGTTAGCTCAAACTTGACCATGTGGGGCTCTTCCTTCACAAGTTTTACGGTCCTCCTATTACAGGTCTTTCCAG</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAAATACTTGTCTCAAGAAGCATACCGTAAGACCTACAATAGGAGAGCTCCCTAACTTTTGACTTTGAATAAATTAATCTCGGTTCCTGTCAGAGATGTCAACTGATAAATTGTTTATCATAATGTTACCTAAACTTTATCAATTAACAGATTTTTGATATCTTTCACACAAACCGAGGTAAGTTAGCTCAAACTTGACCRTGTGGGGCTCTTCCTTCACAAGTTTTACGGTCCTCCTATTACAGGTCTTTCCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23614</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>47023</contig_pos>
        <strand>+</strand>
        <context>CATCCCCTCG[C/T]CGAGCTTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGAAGTCTAACTGTGTTAGCCGATTCCTTGACACTGGTTCATCCCCTCG</left_flank>
        <right_flank>CGAGCTTCTTCTGCTAGCTTGTCAGCCACAATGTTCAATGTTTGGACATG</right_flank>
        <qual_score>146</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATTTTGAGCGCTTGTAGAACTTGAAGAAGGATAAAACTGACGAGCTCTTCGTGATTGGTTTGATCCATTCTCTGATTCAATTGATGAGCAGCCAAACTGTGGAATGAGCATAGATTGAGCCGAGGCATTGCAATCACTTTTGTGTTTCGTCCATCTAGATTTTGGGTTCCAGTGTCATATAAAAATTGTCTGATGGCACCGTCATGGTCTTCGATCTCCAAGAATCCAGGAAGACCAAAATGATTGGATTCTGTTTTTCTCATAAGTGGCGCATATTGAGAGCATGGAGCAATCTGGAAAAATATCTATTGGGAGATTTTTCTTGGAAGAAAGCTTGCCATGAGAGTGACTGGATAGTCTGGAAGATTCTGCCGAGGTAACACTGCATTATAAAACAGTGACTTTCCTTTAGTAAGGATTGGATGTGGGGAAGTAATTATAAAAGAAGTGAAGTCTAACTGTGTTAGCCGATTCCTTGACACTGGTTCATCCCCTCGTCGAGCTTCTTCTGCTAGCTTGTCAGCCACAATGTTCAATGTTTGGACATGGGATAGGGAGATCTGAAAAAATTAAAAATCTTAAAATCTAAACGCTCAATCTATACCTGTTGGAACCTCTTGTAAAGCTCTTCTCCAGAAAGATTATGAGTACTTTGTGTTCTTTCATTTCTACTGTTGTTTACAAGTGTCATTGAATGGTTGACAGGAGAATTCATTGGACTCTGCATGGATACTGACTCTTGTGACATGAAGATTGGAATGGGTGCTGTCCGTGGTGGGGATACTGTAATAGAGTGTATTCTGATTGCTCATCTTCTTTTGAAATATCCACGTCATTCCCTGATAACACCTCAATGATTAGTTATCATCCTCCTACACTTTTGTTCGGAATACTTTTTTCTCACTGATCTACTCATACAACACTGTGTTAAAAGTAATTGTCTAGTGTCAAGTGGGACAGTCAACACCAATCTGTCTACTCACCATTTTGTTGATCCA</canonical>
            <polymorphic>ACATTTTGAGCGCTTGTAGAACTTGAAGAAGGATAAAACTGACGAGCTCTTCGTGATTGGTTTGATCCATTCTCTGATTCAATTGATGAGCAGCCAAACTGTGGAATGAGCATAGATTGAGCCGAGGCATTGCAATCACTTTTGTGTTTCGTCCATCTAGATTTTGGGTTCCAGTGTCATATAAAAATTGTCTGATGGCACCGTCATGGTCTTCGATCTCCAAGAATCCAGGAAGACCAAAATGATTGGATTCTGTTTTTCTCATAAGTGGCGCATATTGAGAGCATGGAGCAATCTGGAAAAATATCTATTGGGAGATTTTTCTTGGAAGAAAGCTTGCCATGAGAGTGACTGGATAGTCTGGAAGATTCTGCCGAGGTAACACTGCATTATAAAACAGTGACTTTCCTTTAGTAAGGATTGGATGTGGGGAAGTAATTATAAAAGAAGTGAAGTCTAACTGTGTTAGCCGATTCCTTGACACTGGTTCATCCCCTCGYCGAGCTTCTTCTGCTAGCTTGTCAGCCACAATGTTCAATGTTTGGACATGGGATAGGGAGATCTGAAAAAATTAAAAATCTTAAAATCTAAACGCTCAATCTATACCTGTTGGAACCTCTTGTAAAGCTCTTCTCCAGAAAGATTATGAGTACTTTGTGTTCTTTCATTTCTACTGTTGTTTACAAGTGTCATTGAATGGTTGACAGGAGAATTCATTGGACTCTGCATGGATACTGACTCTTGTGACATGAAGATTGGAATGGGTGCTGTCCGTGGTGGGGATACTGTAATAGAGTGTATTCTGATTGCTCATCTTCTTTTGAAATATCCACGTCATTCCCTGATAACACCTCAATGATTAGTTATCATCCTCCTACACTTTTGTTCGGAATACTTTTTTCTCACTGATCTACTCATACAACACTGTGTTAAAAGTAATTGTCTAGTGTCAAGTGGGACAGTCAACACCAATCTGTCTACTCACCATTTTGTTGATCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 287 214</canonical_bands>
                <polymorphic_bands>786 214</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGGGGAAGTAATTATAAAAGA</pcr_primer_p1>
		<pcr_primer_p2>CAGTAGAAATGAAAGAACACAAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGTGGGGAAGTAATTATAAAAGAAGTGAAGTCTAACTGTGTTAGCCGATTCCTTGACACTGGTTCATCCCCTCGTCGAGCTTCTTCTGCTAGCTTGTCAGCCACAATGTTCAATGTTTGGACATGGGATAGGGAGATCTGAAAAAATTAAAAATCTTAAAATCTAAACGCTCAATCTATACCTGTTGGAACCTCTTGTAAAGCTCTTCTCCAGAAAGATTATGAGTACTTTGTGTTCTTTCATTTCTACTG</canonical_amplicon>
		<polymorphic_amplicon>TGTGGGGAAGTAATTATAAAAGAAGTGAAGTCTAACTGTGTTAGCCGATTCCTTGACACTGGTTCATCCCCTCGYCGAGCTTCTTCTGCTAGCTTGTCAGCCACAATGTTCAATGTTTGGACATGGGATAGGGAGATCTGAAAAAATTAAAAATCTTAAAATCTAAACGCTCAATCTATACCTGTTGGAACCTCTTGTAAAGCTCTTCTCCAGAAAGATTATGAGTACTTTGTGTTCTTTCATTTCTACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23615</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>47097</contig_pos>
        <strand>+</strand>
        <context>TGAAAAAATT[A/G]WAAATCTTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCCACAATGTTCAATGTTTGGACATGGGATAGGGAGATCTGAAAAAATT</left_flank>
        <right_flank>AAAATCTTAAAATCTAAACGCTCAATCTATACCTGTTGGAACCTCTTGTA</right_flank>
        <qual_score>146</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATTCAATTGATGAGCAGCCAAACTGTGGAATGAGCATAGATTGAGCCGAGGCATTGCAATCACTTTTGTGTTTCGTCCATCTAGATTTTGGGTTCCAGTGTCATATAAAAATTGTCTGATGGCACCGTCATGGTCTTCGATCTCCAAGAATCCAGGAAGACCAAAATGATTGGATTCTGTTTTTCTCATAAGTGGCGCATATTGAGAGCATGGAGCAATCTGGAAAAATATCTATTGGGAGATTTTTCTTGGAAGAAAGCTTGCCATGAGAGTGACTGGATAGTCTGGAAGATTCTGCCGAGGTAACACTGCATTATAAAACAGTGACTTTCCTTTAGTAAGGATTGGATGTGGGGAAGTAATTATAAAAGAAGTGAAGTCTAACTGTGTTAGCCGATTCCTTGACACTGGTTCATCCCCTCGTCGAGCTTCTTCTGCTAGCTTGTCAGCCACAATGTTCAATGTTTGGACATGGGATAGGGAGATCTGAAAAAATTAAAAATCTTAAAATCTAAACGCTCAATCTATACCTGTTGGAACCTCTTGTAAAGCTCTTCTCCAGAAAGATTATGAGTACTTTGTGTTCTTTCATTTCTACTGTTGTTTACAAGTGTCATTGAATGGTTGACAGGAGAATTCATTGGACTCTGCATGGATACTGACTCTTGTGACATGAAGATTGGAATGGGTGCTGTCCGTGGTGGGGATACTGTAATAGAGTGTATTCTGATTGCTCATCTTCTTTTGAAATATCCACGTCATTCCCTGATAACACCTCAATGATTAGTTATCATCCTCCTACACTTTTGTTCGGAATACTTTTTTCTCACTGATCTACTCATACAACACTGTGTTAAAAGTAATTGTCTAGTGTCAAGTGGGACAGTCAACACCAATCTGTCTACTCACCATTTTGTTGATCCATTCCGTTGAATGACATGTAGCTTAACGATGGACGGTCGTCTTTTGACCGACTCCGGCGCACGTAGATACCGTTT</canonical>
            <polymorphic>TGATTCAATTGATGAGCAGCCAAACTGTGGAATGAGCATAGATTGAGCCGAGGCATTGCAATCACTTTTGTGTTTCGTCCATCTAGATTTTGGGTTCCAGTGTCATATAAAAATTGTCTGATGGCACCGTCATGGTCTTCGATCTCCAAGAATCCAGGAAGACCAAAATGATTGGATTCTGTTTTTCTCATAAGTGGCGCATATTGAGAGCATGGAGCAATCTGGAAAAATATCTATTGGGAGATTTTTCTTGGAAGAAAGCTTGCCATGAGAGTGACTGGATAGTCTGGAAGATTCTGCCGAGGTAACACTGCATTATAAAACAGTGACTTTCCTTTAGTAAGGATTGGATGTGGGGAAGTAATTATAAAAGAAGTGAAGTCTAACTGTGTTAGCCGATTCCTTGACACTGGTTCATCCCCTCGTCGAGCTTCTTCTGCTAGCTTGTCAGCCACAATGTTCAATGTTTGGACATGGGATAGGGAGATCTGAAAAAATTRAAAATCTTAAAATCTAAACGCTCAATCTATACCTGTTGGAACCTCTTGTAAAGCTCTTCTCCAGAAAGATTATGAGTACTTTGTGTTCTTTCATTTCTACTGTTGTTTACAAGTGTCATTGAATGGTTGACAGGAGAATTCATTGGACTCTGCATGGATACTGACTCTTGTGACATGAAGATTGGAATGGGTGCTGTCCGTGGTGGGGATACTGTAATAGAGTGTATTCTGATTGCTCATCTTCTTTTGAAATATCCACGTCATTCCCTGATAACACCTCAATGATTAGTTATCATCCTCCTACACTTTTGTTCGGAATACTTTTTTCTCACTGATCTACTCATACAACACTGTGTTAAAAGTAATTGTCTAGTGTCAAGTGGGACAGTCAACACCAATCTGTCTACTCACCATTTTGTTGATCCATTCCGTTGAATGACATGTAGCTTAACGATGGACGGTCGTCTTTTGACCGACTCCGGCGCACGTAGATACCGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>498 349 92 52 9</canonical_bands>
                <polymorphic_bands>507 349 92 52</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGGGGAAGTAATTATAAAAGA</pcr_primer_p1>
		<pcr_primer_p2>CAGTAGAAATGAAAGAACACAAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGTGGGGAAGTAATTATAAAAGAAGTGAAGTCTAACTGTGTTAGCCGATTCCTTGACACTGGTTCATCCCCTCGTCGAGCTTCTTCTGCTAGCTTGTCAGCCACAATGTTCAATGTTTGGACATGGGATAGGGAGATCTGAAAAAATTAAAAATCTTAAAATCTAAACGCTCAATCTATACCTGTTGGAACCTCTTGTAAAGCTCTTCTCCAGAAAGATTATGAGTACTTTGTGTTCTTTCATTTCTACTG</canonical_amplicon>
		<polymorphic_amplicon>TGTGGGGAAGTAATTATAAAAGAAGTGAAGTCTAACTGTGTTAGCCGATTCCTTGACACTGGTTCATCCCCTCGTCGAGCTTCTTCTGCTAGCTTGTCAGCCACAATGTTCAATGTTTGGACATGGGATAGGGAGATCTGAAAAAATTRAAAATCTTAAAATCTAAACGCTCAATCTATACCTGTTGGAACCTCTTGTAAAGCTCTTCTCCAGAAAGATTATGAGTACTTTGTGTTCTTTCATTTCTACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23616</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>47098</contig_pos>
        <strand>+</strand>
        <context>GAAAAAATTR[A/T]AAATCTTAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCCACAATGTTCAATGTTTGGACATGGGATAGGGAGATCTGAAAAAATTA</left_flank>
        <right_flank>AAATCTTAAAATCTAAACGCTCAATCTATACCTGTTGGAACCTCTTGTAA</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTCAATTGATGAGCAGCCAAACTGTGGAATGAGCATAGATTGAGCCGAGGCATTGCAATCACTTTTGTGTTTCGTCCATCTAGATTTTGGGTTCCAGTGTCATATAAAAATTGTCTGATGGCACCGTCATGGTCTTCGATCTCCAAGAATCCAGGAAGACCAAAATGATTGGATTCTGTTTTTCTCATAAGTGGCGCATATTGAGAGCATGGAGCAATCTGGAAAAATATCTATTGGGAGATTTTTCTTGGAAGAAAGCTTGCCATGAGAGTGACTGGATAGTCTGGAAGATTCTGCCGAGGTAACACTGCATTATAAAACAGTGACTTTCCTTTAGTAAGGATTGGATGTGGGGAAGTAATTATAAAAGAAGTGAAGTCTAACTGTGTTAGCCGATTCCTTGACACTGGTTCATCCCCTCGTCGAGCTTCTTCTGCTAGCTTGTCAGCCACAATGTTCAATGTTTGGACATGGGATAGGGAGATCTGAAAAAATTAAAAATCTTAAAATCTAAACGCTCAATCTATACCTGTTGGAACCTCTTGTAAAGCTCTTCTCCAGAAAGATTATGAGTACTTTGTGTTCTTTCATTTCTACTGTTGTTTACAAGTGTCATTGAATGGTTGACAGGAGAATTCATTGGACTCTGCATGGATACTGACTCTTGTGACATGAAGATTGGAATGGGTGCTGTCCGTGGTGGGGATACTGTAATAGAGTGTATTCTGATTGCTCATCTTCTTTTGAAATATCCACGTCATTCCCTGATAACACCTCAATGATTAGTTATCATCCTCCTACACTTTTGTTCGGAATACTTTTTTCTCACTGATCTACTCATACAACACTGTGTTAAAAGTAATTGTCTAGTGTCAAGTGGGACAGTCAACACCAATCTGTCTACTCACCATTTTGTTGATCCATTCCGTTGAATGACATGTAGCTTAACGATGGACGGTCGTCTTTTGACCGACTCCGGCGCACGTAGATACCGTTTG</canonical>
            <polymorphic>GATTCAATTGATGAGCAGCCAAACTGTGGAATGAGCATAGATTGAGCCGAGGCATTGCAATCACTTTTGTGTTTCGTCCATCTAGATTTTGGGTTCCAGTGTCATATAAAAATTGTCTGATGGCACCGTCATGGTCTTCGATCTCCAAGAATCCAGGAAGACCAAAATGATTGGATTCTGTTTTTCTCATAAGTGGCGCATATTGAGAGCATGGAGCAATCTGGAAAAATATCTATTGGGAGATTTTTCTTGGAAGAAAGCTTGCCATGAGAGTGACTGGATAGTCTGGAAGATTCTGCCGAGGTAACACTGCATTATAAAACAGTGACTTTCCTTTAGTAAGGATTGGATGTGGGGAAGTAATTATAAAAGAAGTGAAGTCTAACTGTGTTAGCCGATTCCTTGACACTGGTTCATCCCCTCGTCGAGCTTCTTCTGCTAGCTTGTCAGCCACAATGTTCAATGTTTGGACATGGGATAGGGAGATCTGAAAAAATTAWAAATCTTAAAATCTAAACGCTCAATCTATACCTGTTGGAACCTCTTGTAAAGCTCTTCTCCAGAAAGATTATGAGTACTTTGTGTTCTTTCATTTCTACTGTTGTTTACAAGTGTCATTGAATGGTTGACAGGAGAATTCATTGGACTCTGCATGGATACTGACTCTTGTGACATGAAGATTGGAATGGGTGCTGTCCGTGGTGGGGATACTGTAATAGAGTGTATTCTGATTGCTCATCTTCTTTTGAAATATCCACGTCATTCCCTGATAACACCTCAATGATTAGTTATCATCCTCCTACACTTTTGTTCGGAATACTTTTTTCTCACTGATCTACTCATACAACACTGTGTTAAAAGTAATTGTCTAGTGTCAAGTGGGACAGTCAACACCAATCTGTCTACTCACCATTTTGTTGATCCATTCCGTTGAATGACATGTAGCTTAACGATGGACGGTCGTCTTTTGACCGACTCCGGCGCACGTAGATACCGTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>497 349 92 53 9</canonical_bands>
                <polymorphic_bands>506 349 92 53</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGGGGAAGTAATTATAAAAGA</pcr_primer_p1>
		<pcr_primer_p2>CAGTAGAAATGAAAGAACACAAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGTGGGGAAGTAATTATAAAAGAAGTGAAGTCTAACTGTGTTAGCCGATTCCTTGACACTGGTTCATCCCCTCGTCGAGCTTCTTCTGCTAGCTTGTCAGCCACAATGTTCAATGTTTGGACATGGGATAGGGAGATCTGAAAAAATTAAAAATCTTAAAATCTAAACGCTCAATCTATACCTGTTGGAACCTCTTGTAAAGCTCTTCTCCAGAAAGATTATGAGTACTTTGTGTTCTTTCATTTCTACTG</canonical_amplicon>
		<polymorphic_amplicon>TGTGGGGAAGTAATTATAAAAGAAGTGAAGTCTAACTGTGTTAGCCGATTCCTTGACACTGGTTCATCCCCTCGTCGAGCTTCTTCTGCTAGCTTGTCAGCCACAATGTTCAATGTTTGGACATGGGATAGGGAGATCTGAAAAAATTAWAAATCTTAAAATCTAAACGCTCAATCTATACCTGTTGGAACCTCTTGTAAAGCTCTTCTCCAGAAAGATTATGAGTACTTTGTGTTCTTTCATTTCTACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23617</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>47288</contig_pos>
        <strand>+</strand>
        <context>ATTGGAATGG[A/G]TGCTGTCCGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTGGACTCTGCATGGATACTGACTCTTGTGACATGAAGATTGGAATGG</left_flank>
        <right_flank>TGCTGTCCGTGGTGGGGATACTGTAATAGAGTGTATTCTGATTGCTCATC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTGGCGCATATTGAGAGCATGGAGCAATCTGGAAAAATATCTATTGGGAGATTTTTCTTGGAAGAAAGCTTGCCATGAGAGTGACTGGATAGTCTGGAAGATTCTGCCGAGGTAACACTGCATTATAAAACAGTGACTTTCCTTTAGTAAGGATTGGATGTGGGGAAGTAATTATAAAAGAAGTGAAGTCTAACTGTGTTAGCCGATTCCTTGACACTGGTTCATCCCCTCGTCGAGCTTCTTCTGCTAGCTTGTCAGCCACAATGTTCAATGTTTGGACATGGGATAGGGAGATCTGAAAAAATTAAAAATCTTAAAATCTAAACGCTCAATCTATACCTGTTGGAACCTCTTGTAAAGCTCTTCTCCAGAAAGATTATGAGTACTTTGTGTTCTTTCATTTCTACTGTTGTTTACAAGTGTCATTGAATGGTTGACAGGAGAATTCATTGGACTCTGCATGGATACTGACTCTTGTGACATGAAGATTGGAATGGGTGCTGTCCGTGGTGGGGATACTGTAATAGAGTGTATTCTGATTGCTCATCTTCTTTTGAAATATCCACGTCATTCCCTGATAACACCTCAATGATTAGTTATCATCCTCCTACACTTTTGTTCGGAATACTTTTTTCTCACTGATCTACTCATACAACACTGTGTTAAAAGTAATTGTCTAGTGTCAAGTGGGACAGTCAACACCAATCTGTCTACTCACCATTTTGTTGATCCATTCCGTTGAATGACATGTAGCTTAACGATGGACGGTCGTCTTTTGACCGACTCCGGCGCACGTAGATACCGTTTGGCGAGTGATTGGCGTTTCGATCGAGACCGGATAGTACTGTTCTACGGCAACTGCGATTGTTGTATCCACGAATTGAGTTCTGGAAATAAATGAATGGATTTCCTCTAATAGAAGCCCAACGAAACCGTCAACTTTGAGCTCAATTATCTCGATTCCTGTTAAAGATATCAGAAATTCGTCAACTGATAAA</canonical>
            <polymorphic>AAGTGGCGCATATTGAGAGCATGGAGCAATCTGGAAAAATATCTATTGGGAGATTTTTCTTGGAAGAAAGCTTGCCATGAGAGTGACTGGATAGTCTGGAAGATTCTGCCGAGGTAACACTGCATTATAAAACAGTGACTTTCCTTTAGTAAGGATTGGATGTGGGGAAGTAATTATAAAAGAAGTGAAGTCTAACTGTGTTAGCCGATTCCTTGACACTGGTTCATCCCCTCGTCGAGCTTCTTCTGCTAGCTTGTCAGCCACAATGTTCAATGTTTGGACATGGGATAGGGAGATCTGAAAAAATTAAAAATCTTAAAATCTAAACGCTCAATCTATACCTGTTGGAACCTCTTGTAAAGCTCTTCTCCAGAAAGATTATGAGTACTTTGTGTTCTTTCATTTCTACTGTTGTTTACAAGTGTCATTGAATGGTTGACAGGAGAATTCATTGGACTCTGCATGGATACTGACTCTTGTGACATGAAGATTGGAATGGRTGCTGTCCGTGGTGGGGATACTGTAATAGAGTGTATTCTGATTGCTCATCTTCTTTTGAAATATCCACGTCATTCCCTGATAACACCTCAATGATTAGTTATCATCCTCCTACACTTTTGTTCGGAATACTTTTTTCTCACTGATCTACTCATACAACACTGTGTTAAAAGTAATTGTCTAGTGTCAAGTGGGACAGTCAACACCAATCTGTCTACTCACCATTTTGTTGATCCATTCCGTTGAATGACATGTAGCTTAACGATGGACGGTCGTCTTTTGACCGACTCCGGCGCACGTAGATACCGTTTGGCGAGTGATTGGCGTTTCGATCGAGACCGGATAGTACTGTTCTACGGCAACTGCGATTGTTGTATCCACGAATTGAGTTCTGGAAATAAATGAATGGATTTCCTCTAATAGAAGCCCAACGAAACCGTCAACTTTGAGCTCAATTATCTCGATTCCTGTTAAAGATATCAGAAATTCGTCAACTGATAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>131 122 80 76 61 57 45 34 34 30 29 27 26 23 22 21 20 19 19 18 18 18 16 13 12 9 7 5 5 3</canonical_bands>
                <polymorphic_bands>131 122 80 76 61 57 45 34 34 30 30 29 27 26 23 22 20 19 19 18 18 18 16 13 12 7 5 5 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTAAACGCTCAATCTATACCTG</pcr_primer_p1>
		<pcr_primer_p2>GTGGATATTTCAAAAGAAGATGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTAAACGCTCAATCTATACCTGTTGGAACCTCTTGTAAAGCTCTTCTCCAGAAAGATTATGAGTACTTTGTGTTCTTTCATTTCTACTGTTGTTTACAAGTGTCATTGAATGGTTGACAGGAGAATTCATTGGACTCTGCATGGATACTGACTCTTGTGACATGAAGATTGGAATGGGTGCTGTCCGTGGTGGGGATACTGTAATAGAGTGTATTCTGATTGCTCATCTTCTTTTGAAATATCCAC</canonical_amplicon>
		<polymorphic_amplicon>TCTAAACGCTCAATCTATACCTGTTGGAACCTCTTGTAAAGCTCTTCTCCAGAAAGATTATGAGTACTTTGTGTTCTTTCATTTCTACTGTTGTTTACAAGTGTCATTGAATGGTTGACAGGAGAATTCATTGGACTCTGCATGGATACTGACTCTTGTGACATGAAGATTGGAATGGRTGCTGTCCGTGGTGGGGATACTGTAATAGAGTGTATTCTGATTGCTCATCTTCTTTTGAAATATCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23618</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>54297</contig_pos>
        <strand>+</strand>
        <context>GGAGTGGGTC[A/G]GAGAAATGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCTTTAATAGAAGGGCCACTCTAATAGAAGGGCCCTCCGGGAGTGGGTC</left_flank>
        <right_flank>GAGAAATGGAAGGTCTTTCTAATACAGTTCTTACAGTATGTCACATCGAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGTACCTATATCCTGTCTGTGGTGTGTTCTACATCTGTGTTGGTTTTGAATACACGAGTAGTTGGGGTGAGCCGCGCGTTTTTTGTTGAGGTCCTGAGAAAATATTGTGAGTGGAAAAGAGAATCAGAGAAATCCAGAGGGGAGGAAAATGAGCATTTTCCAAGTAAATGATAACCAGAGAAACCGCGCAATTTCTCACTTACCCATATTGATTTCTAGACCGTTTTTTTCAACTTTGTGATAGTTTTTTGATAGACCATTAGGATCTGATAGGGCCACACCTGATNNNNNNNNNNTCCACTTCTGTTGAAAATTTGGATTGAGGTGTCTGAAAAAAAGGGCTTGATGGTTGTATAAAGAACAAAACGAAACTTAATTGTAGTTAATTGTTTTTTTTCTGCTAAAGTTAATCGACATTGGATACAGTGAAAACTGTATTAGAAGAGTCCCTTTAATAGAAGGGCCACTCTAATAGAAGGGCCCTCCGGGAGTGGGTCGGAGAAATGGAAGGTCTTTCTAATACAGTTCTTACAGTATGTCACATCGAAATGGCACCACAAGTTTATAAAATACATACTTTGTCAGGTTTGAATTTTTTCTTTGTCAGGTTGTGAATTTTTTCTTTGTCAGGTTTGAATTTTTTCTGGTTTCAAACTGAATATCTTCGTTAAAGGAATTTTACGAAACCTTTGGTGACTGTATACCGTACATTGAATTTTTTTTAGTTTGATAAAAAAAGTTTCAAACTTTTCTTCATAGAAAACAATAAAGCTAAAAACTTTCAACTTTTTTGAGCTTTCCTGTATGTGTTCTTCATTCAGTTCTTGCTTCGCACGATTTCCACTTATAGGAGAAGTTGTAAAAGTAATAAAAAAATACAAAAGTAAAATAGAGTTTTACTAGTCACTCCAGATTCTGAAACTCTATAGAAAGATCCGAAAACAAGAGACACTGAAAGAAAAAGAAAAAGGATAATAGAATACACTCGTCGTGAGCTT</canonical>
            <polymorphic>ACAGTACCTATATCCTGTCTGTGGTGTGTTCTACATCTGTGTTGGTTTTGAATACACGAGTAGTTGGGGTGAGCCGCGCGTTTTTTGTTGAGGTCCTGAGAAAATATTGTGAGTGGAAAAGAGAATCAGAGAAATCCAGAGGGGAGGAAAATGAGCATTTTCCAAGTAAATGATAACCAGAGAAACCGCGCAATTTCTCACTTACCCATATTGATTTCTAGACCGTTTTTTTCAACTTTGTGATAGTTTTTTGATAGACCATTAGGATCTGATAGGGCCACACCTGATNNNNNNNNNNTCCACTTCTGTTGAAAATTTGGATTGAGGTGTCTGAAAAAAAGGGCTTGATGGTTGTATAAAGAACAAAACGAAACTTAATTGTAGTTAATTGTTTTTTTTCTGCTAAAGTTAATCGACATTGGATACAGTGAAAACTGTATTAGAAGAGTCCCTTTAATAGAAGGGCCACTCTAATAGAAGGGCCCTCCGGGAGTGGGTCRGAGAAATGGAAGGTCTTTCTAATACAGTTCTTACAGTATGTCACATCGAAATGGCACCACAAGTTTATAAAATACATACTTTGTCAGGTTTGAATTTTTTCTTTGTCAGGTTGTGAATTTTTTCTTTGTCAGGTTTGAATTTTTTCTGGTTTCAAACTGAATATCTTCGTTAAAGGAATTTTACGAAACCTTTGGTGACTGTATACCGTACATTGAATTTTTTTTAGTTTGATAAAAAAAGTTTCAAACTTTTCTTCATAGAAAACAATAAAGCTAAAAACTTTCAACTTTTTTGAGCTTTCCTGTATGTGTTCTTCATTCAGTTCTTGCTTCGCACGATTTCCACTTATAGGAGAAGTTGTAAAAGTAATAAAAAAATACAAAAGTAAAATAGAGTTTTACTAGTCACTCCAGATTCTGAAACTCTATAGAAAGATCCGAAAACAAGAGACACTGAAAGAAAAAGAAAAAGGATAATAGAATACACTCGTCGTGAGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTGCTAAAGTTAATCGACAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTCAAACCTGACAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTCTGCTAAAGTTAATCGACATTGGATACAGTGAAAACTGTATTAGAAGAGTCCCTTTAATAGAAGGGCCACTCTAATAGAAGGGCCCTCCGGGAGTGGGTCGGAGAAATGGAAGGTCTTTCTAATACAGTTCTTACAGTATGTCACATCGAAATGGCACCACAAGTTTATAAAATACATACTTTGTCAGGTTTGAATTTTTTCTTTGTCAGGTTGTGAATTTTTTCTTTGTCAGGTTTGAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTGCTAAAGTTAATCGACATTGGATACAGTGAAAACTGTATTAGAAGAGTCCCTTTAATAGAAGGGCCACTCTAATAGAAGGGCCCTCCGGGAGTGGGTCRGAGAAATGGAAGGTCTTTCTAATACAGTTCTTACAGTATGTCACATCGAAATGGCACCACAAGTTTATAAAATACATACTTTGTCAGGTTTGAATTTTTTCTTTGTCAGGTTGTGAATTTTTTCTTTGTCAGGTTTGAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23619</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>54310</contig_pos>
        <strand>+</strand>
        <context>GAAATGGAAG[A/G]TCTTTCTAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGCCACTCTAATAGAAGGGCCCTCCGGGAGTGGGTCGGAGAAATGGAAG</left_flank>
        <right_flank>TCTTTCTAATACAGTTCTTACAGTATGTCACATCGAAATGGCACCACAAG</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGTCTGTGGTGTGTTCTACATCTGTGTTGGTTTTGAATACACGAGTAGTTGGGGTGAGCCGCGCGTTTTTTGTTGAGGTCCTGAGAAAATATTGTGAGTGGAAAAGAGAATCAGAGAAATCCAGAGGGGAGGAAAATGAGCATTTTCCAAGTAAATGATAACCAGAGAAACCGCGCAATTTCTCACTTACCCATATTGATTTCTAGACCGTTTTTTTCAACTTTGTGATAGTTTTTTGATAGACCATTAGGATCTGATAGGGCCACACCTGATNNNNNNNNNNTCCACTTCTGTTGAAAATTTGGATTGAGGTGTCTGAAAAAAAGGGCTTGATGGTTGTATAAAGAACAAAACGAAACTTAATTGTAGTTAATTGTTTTTTTTCTGCTAAAGTTAATCGACATTGGATACAGTGAAAACTGTATTAGAAGAGTCCCTTTAATAGAAGGGCCACTCTAATAGAAGGGCCCTCCGGGAGTGGGTCGGAGAAATGGAAGGTCTTTCTAATACAGTTCTTACAGTATGTCACATCGAAATGGCACCACAAGTTTATAAAATACATACTTTGTCAGGTTTGAATTTTTTCTTTGTCAGGTTGTGAATTTTTTCTTTGTCAGGTTTGAATTTTTTCTGGTTTCAAACTGAATATCTTCGTTAAAGGAATTTTACGAAACCTTTGGTGACTGTATACCGTACATTGAATTTTTTTTAGTTTGATAAAAAAAGTTTCAAACTTTTCTTCATAGAAAACAATAAAGCTAAAAACTTTCAACTTTTTTGAGCTTTCCTGTATGTGTTCTTCATTCAGTTCTTGCTTCGCACGATTTCCACTTATAGGAGAAGTTGTAAAAGTAATAAAAAAATACAAAAGTAAAATAGAGTTTTACTAGTCACTCCAGATTCTGAAACTCTATAGAAAGATCCGAAAACAAGAGACACTGAAAGAAAAAGAAAAAGGATAATAGAATACACTCGTCGTGAGCTTTGCGAGAAACGAT</canonical>
            <polymorphic>CCTGTCTGTGGTGTGTTCTACATCTGTGTTGGTTTTGAATACACGAGTAGTTGGGGTGAGCCGCGCGTTTTTTGTTGAGGTCCTGAGAAAATATTGTGAGTGGAAAAGAGAATCAGAGAAATCCAGAGGGGAGGAAAATGAGCATTTTCCAAGTAAATGATAACCAGAGAAACCGCGCAATTTCTCACTTACCCATATTGATTTCTAGACCGTTTTTTTCAACTTTGTGATAGTTTTTTGATAGACCATTAGGATCTGATAGGGCCACACCTGATNNNNNNNNNNTCCACTTCTGTTGAAAATTTGGATTGAGGTGTCTGAAAAAAAGGGCTTGATGGTTGTATAAAGAACAAAACGAAACTTAATTGTAGTTAATTGTTTTTTTTCTGCTAAAGTTAATCGACATTGGATACAGTGAAAACTGTATTAGAAGAGTCCCTTTAATAGAAGGGCCACTCTAATAGAAGGGCCCTCCGGGAGTGGGTCGGAGAAATGGAAGRTCTTTCTAATACAGTTCTTACAGTATGTCACATCGAAATGGCACCACAAGTTTATAAAATACATACTTTGTCAGGTTTGAATTTTTTCTTTGTCAGGTTGTGAATTTTTTCTTTGTCAGGTTTGAATTTTTTCTGGTTTCAAACTGAATATCTTCGTTAAAGGAATTTTACGAAACCTTTGGTGACTGTATACCGTACATTGAATTTTTTTTAGTTTGATAAAAAAAGTTTCAAACTTTTCTTCATAGAAAACAATAAAGCTAAAAACTTTCAACTTTTTTGAGCTTTCCTGTATGTGTTCTTCATTCAGTTCTTGCTTCGCACGATTTCCACTTATAGGAGAAGTTGTAAAAGTAATAAAAAAATACAAAAGTAAAATAGAGTTTTACTAGTCACTCCAGATTCTGAAACTCTATAGAAAGATCCGAAAACAAGAGACACTGAAAGAAAAAGAAAAAGGATAATAGAATACACTCGTCGTGAGCTTTGCGAGAAACGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTGCTAAAGTTAATCGACAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTCAAACCTGACAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTCTGCTAAAGTTAATCGACATTGGATACAGTGAAAACTGTATTAGAAGAGTCCCTTTAATAGAAGGGCCACTCTAATAGAAGGGCCCTCCGGGAGTGGGTCGGAGAAATGGAAGGTCTTTCTAATACAGTTCTTACAGTATGTCACATCGAAATGGCACCACAAGTTTATAAAATACATACTTTGTCAGGTTTGAATTTTTTCTTTGTCAGGTTGTGAATTTTTTCTTTGTCAGGTTTGAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTGCTAAAGTTAATCGACATTGGATACAGTGAAAACTGTATTAGAAGAGTCCCTTTAATAGAAGGGCCACTCTAATAGAAGGGCCCTCCGGGAGTGGGTCGGAGAAATGGAAGRTCTTTCTAATACAGTTCTTACAGTATGTCACATCGAAATGGCACCACAAGTTTATAAAATACATACTTTGTCAGGTTTGAATTTTTTCTTTGTCAGGTTGTGAATTTTTTCTTTGTCAGGTTTGAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23620</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>91773</contig_pos>
        <strand>+</strand>
        <context>TATTGAACTA[A/G]RTCATACTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGGGACATAGGTAGCACCAACACTGAAAAGAAAAGTTCTTATTGAACTA</left_flank>
        <right_flank>ATCATACTATAATTCTTGTCTGAAATCAATGAATGTAGAGGCTCAAGAGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGTACCTGTATTCCCTGCCCTGTCTCTCTCCATTATTCTAATCTCGCAGTACAACTTACATCATAATTTCGAGAACAGTTTTTTTTTCGAAACGAACATTTACATGTTTTTAATAAATTGAGGTTCCAAGAAATCTTGGGAAAATTTATTGTTTAAATTATTAGATGTACAAAAATTTTATTGAGATTCATGATTACAGCACCTTTGCCAATCCAAGCTTTCCATTCTGCATATCGTGCACATGACAATAGGCACGCATGAATGGTGGTCCCAGCATCCAAGCTGGGTAGAATCCTCCAGCAGTCAACTCGTAGAAAGCAAACATGCATGGACCTGGTCCAGCAGAGACAACGAACGAAGTGGATGGCATATTATATGTCTTTCCGTTGATGGTGAATACGATATCAGGGACAACAGCGTCACAATCAATGAAGAATGCTCCGGTTCCAGGGACATAGGTAGCACCAACACTGAAAAGAAAAGTTCTTATTGAACTAAATCATACTATAATTCTTGTCTGAAATCAATGAATGTAGAGGCTCAAGAGTGAACTACCGTATCTTTTGAGCTATTTCAATTATCATTTTCCAATTCTATCAATTTTTCGATGCTTTTCACCGTGTTTTTCGATTATTTCCATCATTTTAAGCTTTCTGGTTTACATCGACAAAGAAGTGACAATTGTAGAAAAAAAGGAACATAGTATTTAAAGCAGGCTCAAAGAATACGGTAGTTCGCTTTTTCGCTTTCGAAGAAAATTTAACGAGATATCCGCGCTCAACATGCCTTGACTTCAGCTAAGATTATAAATTTCTTACGTCTTGGCCAAACTAGTGACGACACTCTTTGGAGCTCCGATGAAAGAGGCAGCAGTGTCAGCAGCAGCTTGCCATCCAGCTGTCGGGTTCTGTGAGTATGATCCAGAAGAGACTCTATAAAAAAATTAATCAAGAAACCAATTGGATCAGCTTACACTTACCCAGAAAGTTTGAATTGCC</canonical>
            <polymorphic>TATGTACCTGTATTCCCTGCCCTGTCTCTCTCCATTATTCTAATCTCGCAGTACAACTTACATCATAATTTCGAGAACAGTTTTTTTTTCGAAACGAACATTTACATGTTTTTAATAAATTGAGGTTCCAAGAAATCTTGGGAAAATTTATTGTTTAAATTATTAGATGTACAAAAATTTTATTGAGATTCATGATTACAGCACCTTTGCCAATCCAAGCTTTCCATTCTGCATATCGTGCACATGACAATAGGCACGCATGAATGGTGGTCCCAGCATCCAAGCTGGGTAGAATCCTCCAGCAGTCAACTCGTAGAAAGCAAACATGCATGGACCTGGTCCAGCAGAGACAACGAACGAAGTGGATGGCATATTATATGTCTTTCCGTTGATGGTGAATACGATATCAGGGACAACAGCGTCACAATCAATGAAGAATGCTCCGGTTCCAGGGACATAGGTAGCACCAACACTGAAAAGAAAAGTTCTTATTGAACTARATCATACTATAATTCTTGTCTGAAATCAATGAATGTAGAGGCTCAAGAGTGAACTACCGTATCTTTTGAGCTATTTCAATTATCATTTTCCAATTCTATCAATTTTTCGATGCTTTTCACCGTGTTTTTCGATTATTTCCATCATTTTAAGCTTTCTGGTTTACATCGACAAAGAAGTGACAATTGTAGAAAAAAAGGAACATAGTATTTAAAGCAGGCTCAAAGAATACGGTAGTTCGCTTTTTCGCTTTCGAAGAAAATTTAACGAGATATCCGCGCTCAACATGCCTTGACTTCAGCTAAGATTATAAATTTCTTACGTCTTGGCCAAACTAGTGACGACACTCTTTGGAGCTCCGATGAAAGAGGCAGCAGTGTCAGCAGCAGCTTGCCATCCAGCTGTCGGGTTCTGTGAGTATGATCCAGAAGAGACTCTATAAAAAAATTAATCAAGAAACCAATTGGATCAGCTTACACTTACCCAGAAAGTTTGAATTGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATACGATATCAGGGACAACAG</pcr_primer_p1>
		<pcr_primer_p2>AAATGATGGAAATAATCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATACGATATCAGGGACAACAGCGTCACAATCAATGAAGAATGCTCCGGTTCCAGGGACATAGGTAGCACCAACACTGAAAAGAAAAGTTCTTATTGAACTAAATCATACTATAATTCTTGTCTGAAATCAATGAATGTAGAGGCTCAAGAGTGAACTACCGTATCTTTTGAGCTATTTCAATTATCATTTTCCAATTCTATCAATTTTTCGATGCTTTTCACCGTGTTTTTCGATTATTTCCATCATTT</canonical_amplicon>
		<polymorphic_amplicon>AATACGATATCAGGGACAACAGCGTCACAATCAATGAAGAATGCTCCGGTTCCAGGGACATAGGTAGCACCAACACTGAAAAGAAAAGTTCTTATTGAACTARATCATACTATAATTCTTGTCTGAAATCAATGAATGTAGAGGCTCAAGAGTGAACTACCGTATCTTTTGAGCTATTTCAATTATCATTTTCCAATTCTATCAATTTTTCGATGCTTTTCACCGTGTTTTTCGATTATTTCCATCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23621</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>91774</contig_pos>
        <strand>+</strand>
        <context>ATTGAACTAR[A/G]TCATACTATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGGACATAGGTAGCACCAACACTGAAAAGAAAAGTTCTTATTGAACTAA</left_flank>
        <right_flank>TCATACTATAATTCTTGTCTGAAATCAATGAATGTAGAGGCTCAAGAGTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTACCTGTATTCCCTGCCCTGTCTCTCTCCATTATTCTAATCTCGCAGTACAACTTACATCATAATTTCGAGAACAGTTTTTTTTTCGAAACGAACATTTACATGTTTTTAATAAATTGAGGTTCCAAGAAATCTTGGGAAAATTTATTGTTTAAATTATTAGATGTACAAAAATTTTATTGAGATTCATGATTACAGCACCTTTGCCAATCCAAGCTTTCCATTCTGCATATCGTGCACATGACAATAGGCACGCATGAATGGTGGTCCCAGCATCCAAGCTGGGTAGAATCCTCCAGCAGTCAACTCGTAGAAAGCAAACATGCATGGACCTGGTCCAGCAGAGACAACGAACGAAGTGGATGGCATATTATATGTCTTTCCGTTGATGGTGAATACGATATCAGGGACAACAGCGTCACAATCAATGAAGAATGCTCCGGTTCCAGGGACATAGGTAGCACCAACACTGAAAAGAAAAGTTCTTATTGAACTAAATCATACTATAATTCTTGTCTGAAATCAATGAATGTAGAGGCTCAAGAGTGAACTACCGTATCTTTTGAGCTATTTCAATTATCATTTTCCAATTCTATCAATTTTTCGATGCTTTTCACCGTGTTTTTCGATTATTTCCATCATTTTAAGCTTTCTGGTTTACATCGACAAAGAAGTGACAATTGTAGAAAAAAAGGAACATAGTATTTAAAGCAGGCTCAAAGAATACGGTAGTTCGCTTTTTCGCTTTCGAAGAAAATTTAACGAGATATCCGCGCTCAACATGCCTTGACTTCAGCTAAGATTATAAATTTCTTACGTCTTGGCCAAACTAGTGACGACACTCTTTGGAGCTCCGATGAAAGAGGCAGCAGTGTCAGCAGCAGCTTGCCATCCAGCTGTCGGGTTCTGTGAGTATGATCCAGAAGAGACTCTATAAAAAAATTAATCAAGAAACCAATTGGATCAGCTTACACTTACCCAGAAAGTTTGAATTGCCA</canonical>
            <polymorphic>ATGTACCTGTATTCCCTGCCCTGTCTCTCTCCATTATTCTAATCTCGCAGTACAACTTACATCATAATTTCGAGAACAGTTTTTTTTTCGAAACGAACATTTACATGTTTTTAATAAATTGAGGTTCCAAGAAATCTTGGGAAAATTTATTGTTTAAATTATTAGATGTACAAAAATTTTATTGAGATTCATGATTACAGCACCTTTGCCAATCCAAGCTTTCCATTCTGCATATCGTGCACATGACAATAGGCACGCATGAATGGTGGTCCCAGCATCCAAGCTGGGTAGAATCCTCCAGCAGTCAACTCGTAGAAAGCAAACATGCATGGACCTGGTCCAGCAGAGACAACGAACGAAGTGGATGGCATATTATATGTCTTTCCGTTGATGGTGAATACGATATCAGGGACAACAGCGTCACAATCAATGAAGAATGCTCCGGTTCCAGGGACATAGGTAGCACCAACACTGAAAAGAAAAGTTCTTATTGAACTAARTCATACTATAATTCTTGTCTGAAATCAATGAATGTAGAGGCTCAAGAGTGAACTACCGTATCTTTTGAGCTATTTCAATTATCATTTTCCAATTCTATCAATTTTTCGATGCTTTTCACCGTGTTTTTCGATTATTTCCATCATTTTAAGCTTTCTGGTTTACATCGACAAAGAAGTGACAATTGTAGAAAAAAAGGAACATAGTATTTAAAGCAGGCTCAAAGAATACGGTAGTTCGCTTTTTCGCTTTCGAAGAAAATTTAACGAGATATCCGCGCTCAACATGCCTTGACTTCAGCTAAGATTATAAATTTCTTACGTCTTGGCCAAACTAGTGACGACACTCTTTGGAGCTCCGATGAAAGAGGCAGCAGTGTCAGCAGCAGCTTGCCATCCAGCTGTCGGGTTCTGTGAGTATGATCCAGAAGAGACTCTATAAAAAAATTAATCAAGAAACCAATTGGATCAGCTTACACTTACCCAGAAAGTTTGAATTGCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATACGATATCAGGGACAACAG</pcr_primer_p1>
		<pcr_primer_p2>AAATGATGGAAATAATCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATACGATATCAGGGACAACAGCGTCACAATCAATGAAGAATGCTCCGGTTCCAGGGACATAGGTAGCACCAACACTGAAAAGAAAAGTTCTTATTGAACTAAATCATACTATAATTCTTGTCTGAAATCAATGAATGTAGAGGCTCAAGAGTGAACTACCGTATCTTTTGAGCTATTTCAATTATCATTTTCCAATTCTATCAATTTTTCGATGCTTTTCACCGTGTTTTTCGATTATTTCCATCATTT</canonical_amplicon>
		<polymorphic_amplicon>AATACGATATCAGGGACAACAGCGTCACAATCAATGAAGAATGCTCCGGTTCCAGGGACATAGGTAGCACCAACACTGAAAAGAAAAGTTCTTATTGAACTAARTCATACTATAATTCTTGTCTGAAATCAATGAATGTAGAGGCTCAAGAGTGAACTACCGTATCTTTTGAGCTATTTCAATTATCATTTTCCAATTCTATCAATTTTTCGATGCTTTTCACCGTGTTTTTCGATTATTTCCATCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23622</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>91823</contig_pos>
        <strand>+</strand>
        <context>GGCTCAAGAG[C/T]GAACTACCST</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCATACTATAATTCTTGTCTGAAATCAATGAATGTAGAGGCTCAAGAG</left_flank>
        <right_flank>GAACTACCGTATCTTTTGAGCTATTTCAATTATCATTTTCCAATTCTATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTACAACTTACATCATAATTTCGAGAACAGTTTTTTTTTCGAAACGAACATTTACATGTTTTTAATAAATTGAGGTTCCAAGAAATCTTGGGAAAATTTATTGTTTAAATTATTAGATGTACAAAAATTTTATTGAGATTCATGATTACAGCACCTTTGCCAATCCAAGCTTTCCATTCTGCATATCGTGCACATGACAATAGGCACGCATGAATGGTGGTCCCAGCATCCAAGCTGGGTAGAATCCTCCAGCAGTCAACTCGTAGAAAGCAAACATGCATGGACCTGGTCCAGCAGAGACAACGAACGAAGTGGATGGCATATTATATGTCTTTCCGTTGATGGTGAATACGATATCAGGGACAACAGCGTCACAATCAATGAAGAATGCTCCGGTTCCAGGGACATAGGTAGCACCAACACTGAAAAGAAAAGTTCTTATTGAACTAAATCATACTATAATTCTTGTCTGAAATCAATGAATGTAGAGGCTCAAGAGTGAACTACCGTATCTTTTGAGCTATTTCAATTATCATTTTCCAATTCTATCAATTTTTCGATGCTTTTCACCGTGTTTTTCGATTATTTCCATCATTTTAAGCTTTCTGGTTTACATCGACAAAGAAGTGACAATTGTAGAAAAAAAGGAACATAGTATTTAAAGCAGGCTCAAAGAATACGGTAGTTCGCTTTTTCGCTTTCGAAGAAAATTTAACGAGATATCCGCGCTCAACATGCCTTGACTTCAGCTAAGATTATAAATTTCTTACGTCTTGGCCAAACTAGTGACGACACTCTTTGGAGCTCCGATGAAAGAGGCAGCAGTGTCAGCAGCAGCTTGCCATCCAGCTGTCGGGTTCTGTGAGTATGATCCAGAAGAGACTCTATAAAAAAATTAATCAAGAAACCAATTGGATCAGCTTACACTTACCCAGAAAGTTTGAATTGCCAGAAAGTTTGAGTTGTCAATGGGACCCAGTCGACATTGGCGTTGCAATGA</canonical>
            <polymorphic>GTACAACTTACATCATAATTTCGAGAACAGTTTTTTTTTCGAAACGAACATTTACATGTTTTTAATAAATTGAGGTTCCAAGAAATCTTGGGAAAATTTATTGTTTAAATTATTAGATGTACAAAAATTTTATTGAGATTCATGATTACAGCACCTTTGCCAATCCAAGCTTTCCATTCTGCATATCGTGCACATGACAATAGGCACGCATGAATGGTGGTCCCAGCATCCAAGCTGGGTAGAATCCTCCAGCAGTCAACTCGTAGAAAGCAAACATGCATGGACCTGGTCCAGCAGAGACAACGAACGAAGTGGATGGCATATTATATGTCTTTCCGTTGATGGTGAATACGATATCAGGGACAACAGCGTCACAATCAATGAAGAATGCTCCGGTTCCAGGGACATAGGTAGCACCAACACTGAAAAGAAAAGTTCTTATTGAACTAAATCATACTATAATTCTTGTCTGAAATCAATGAATGTAGAGGCTCAAGAGYGAACTACCGTATCTTTTGAGCTATTTCAATTATCATTTTCCAATTCTATCAATTTTTCGATGCTTTTCACCGTGTTTTTCGATTATTTCCATCATTTTAAGCTTTCTGGTTTACATCGACAAAGAAGTGACAATTGTAGAAAAAAAGGAACATAGTATTTAAAGCAGGCTCAAAGAATACGGTAGTTCGCTTTTTCGCTTTCGAAGAAAATTTAACGAGATATCCGCGCTCAACATGCCTTGACTTCAGCTAAGATTATAAATTTCTTACGTCTTGGCCAAACTAGTGACGACACTCTTTGGAGCTCCGATGAAAGAGGCAGCAGTGTCAGCAGCAGCTTGCCATCCAGCTGTCGGGTTCTGTGAGTATGATCCAGAAGAGACTCTATAAAAAAATTAATCAAGAAACCAATTGGATCAGCTTACACTTACCCAGAAAGTTTGAATTGCCAGAAAGTTTGAGTTGTCAATGGGACCCAGTCGACATTGGCGTTGCAATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>159 153 95 79 74 68 62 55 42 37 37 33 33 27 14 13 6 6 5 2</canonical_bands>
                <polymorphic_bands>159 153 147 95 74 62 55 42 37 37 33 33 27 14 13 6 6 5 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>370 244 190 110 67 19</canonical_bands>
                <polymorphic_bands>370 354 190 67 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATACGATATCAGGGACAACAG</pcr_primer_p1>
		<pcr_primer_p2>AAATGATGGAAATAATCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATACGATATCAGGGACAACAGCGTCACAATCAATGAAGAATGCTCCGGTTCCAGGGACATAGGTAGCACCAACACTGAAAAGAAAAGTTCTTATTGAACTAAATCATACTATAATTCTTGTCTGAAATCAATGAATGTAGAGGCTCAAGAGTGAACTACCGTATCTTTTGAGCTATTTCAATTATCATTTTCCAATTCTATCAATTTTTCGATGCTTTTCACCGTGTTTTTCGATTATTTCCATCATTT</canonical_amplicon>
		<polymorphic_amplicon>AATACGATATCAGGGACAACAGCGTCACAATCAATGAAGAATGCTCCGGTTCCAGGGACATAGGTAGCACCAACACTGAAAAGAAAAGTTCTTATTGAACTAAATCATACTATAATTCTTGTCTGAAATCAATGAATGTAGAGGCTCAAGAGYGAACTACCGTATCTTTTGAGCTATTTCAATTATCATTTTCCAATTCTATCAATTTTTCGATGCTTTTCACCGTGTTTTTCGATTATTTCCATCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23623</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>91832</contig_pos>
        <strand>+</strand>
        <context>GYGAACTACC[C/G]TATCTTTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATAATTCTTGTCTGAAATCAATGAATGTAGAGGCTCAAGAGTGAACTACC</left_flank>
        <right_flank>TATCTTTTGAGCTATTTCAATTATCATTTTCCAATTCTATCAATTTTTCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATCATAATTTCGAGAACAGTTTTTTTTTCGAAACGAACATTTACATGTTTTTAATAAATTGAGGTTCCAAGAAATCTTGGGAAAATTTATTGTTTAAATTATTAGATGTACAAAAATTTTATTGAGATTCATGATTACAGCACCTTTGCCAATCCAAGCTTTCCATTCTGCATATCGTGCACATGACAATAGGCACGCATGAATGGTGGTCCCAGCATCCAAGCTGGGTAGAATCCTCCAGCAGTCAACTCGTAGAAAGCAAACATGCATGGACCTGGTCCAGCAGAGACAACGAACGAAGTGGATGGCATATTATATGTCTTTCCGTTGATGGTGAATACGATATCAGGGACAACAGCGTCACAATCAATGAAGAATGCTCCGGTTCCAGGGACATAGGTAGCACCAACACTGAAAAGAAAAGTTCTTATTGAACTAAATCATACTATAATTCTTGTCTGAAATCAATGAATGTAGAGGCTCAAGAGTGAACTACCGTATCTTTTGAGCTATTTCAATTATCATTTTCCAATTCTATCAATTTTTCGATGCTTTTCACCGTGTTTTTCGATTATTTCCATCATTTTAAGCTTTCTGGTTTACATCGACAAAGAAGTGACAATTGTAGAAAAAAAGGAACATAGTATTTAAAGCAGGCTCAAAGAATACGGTAGTTCGCTTTTTCGCTTTCGAAGAAAATTTAACGAGATATCCGCGCTCAACATGCCTTGACTTCAGCTAAGATTATAAATTTCTTACGTCTTGGCCAAACTAGTGACGACACTCTTTGGAGCTCCGATGAAAGAGGCAGCAGTGTCAGCAGCAGCTTGCCATCCAGCTGTCGGGTTCTGTGAGTATGATCCAGAAGAGACTCTATAAAAAAATTAATCAAGAAACCAATTGGATCAGCTTACACTTACCCAGAAAGTTTGAATTGCCAGAAAGTTTGAGTTGTCAATGGGACCCAGTCGACATTGGCGTTGCAATGAGTGGTGTCA</canonical>
            <polymorphic>ACATCATAATTTCGAGAACAGTTTTTTTTTCGAAACGAACATTTACATGTTTTTAATAAATTGAGGTTCCAAGAAATCTTGGGAAAATTTATTGTTTAAATTATTAGATGTACAAAAATTTTATTGAGATTCATGATTACAGCACCTTTGCCAATCCAAGCTTTCCATTCTGCATATCGTGCACATGACAATAGGCACGCATGAATGGTGGTCCCAGCATCCAAGCTGGGTAGAATCCTCCAGCAGTCAACTCGTAGAAAGCAAACATGCATGGACCTGGTCCAGCAGAGACAACGAACGAAGTGGATGGCATATTATATGTCTTTCCGTTGATGGTGAATACGATATCAGGGACAACAGCGTCACAATCAATGAAGAATGCTCCGGTTCCAGGGACATAGGTAGCACCAACACTGAAAAGAAAAGTTCTTATTGAACTAAATCATACTATAATTCTTGTCTGAAATCAATGAATGTAGAGGCTCAAGAGTGAACTACCSTATCTTTTGAGCTATTTCAATTATCATTTTCCAATTCTATCAATTTTTCGATGCTTTTCACCGTGTTTTTCGATTATTTCCATCATTTTAAGCTTTCTGGTTTACATCGACAAAGAAGTGACAATTGTAGAAAAAAAGGAACATAGTATTTAAAGCAGGCTCAAAGAATACGGTAGTTCGCTTTTTCGCTTTCGAAGAAAATTTAACGAGATATCCGCGCTCAACATGCCTTGACTTCAGCTAAGATTATAAATTTCTTACGTCTTGGCCAAACTAGTGACGACACTCTTTGGAGCTCCGATGAAAGAGGCAGCAGTGTCAGCAGCAGCTTGCCATCCAGCTGTCGGGTTCTGTGAGTATGATCCAGAAGAGACTCTATAAAAAAATTAATCAAGAAACCAATTGGATCAGCTTACACTTACCCAGAAAGTTTGAATTGCCAGAAAGTTTGAGTTGTCAATGGGACCCAGTCGACATTGGCGTTGCAATGAGTGGTGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>479 328 110 63 20</canonical_bands>
                <polymorphic_bands>542 328 110 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATACGATATCAGGGACAACAG</pcr_primer_p1>
		<pcr_primer_p2>AAATGATGGAAATAATCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATACGATATCAGGGACAACAGCGTCACAATCAATGAAGAATGCTCCGGTTCCAGGGACATAGGTAGCACCAACACTGAAAAGAAAAGTTCTTATTGAACTAAATCATACTATAATTCTTGTCTGAAATCAATGAATGTAGAGGCTCAAGAGTGAACTACCGTATCTTTTGAGCTATTTCAATTATCATTTTCCAATTCTATCAATTTTTCGATGCTTTTCACCGTGTTTTTCGATTATTTCCATCATTT</canonical_amplicon>
		<polymorphic_amplicon>AATACGATATCAGGGACAACAGCGTCACAATCAATGAAGAATGCTCCGGTTCCAGGGACATAGGTAGCACCAACACTGAAAAGAAAAGTTCTTATTGAACTAAATCATACTATAATTCTTGTCTGAAATCAATGAATGTAGAGGCTCAAGAGTGAACTACCSTATCTTTTGAGCTATTTCAATTATCATTTTCCAATTCTATCAATTTTTCGATGCTTTTCACCGTGTTTTTCGATTATTTCCATCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23624</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>91886</contig_pos>
        <strand>+</strand>
        <context>TTTTTCGATG[A/C]TTTTCACCGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTTTGAGCTATTTCAATTATCATTTTCCAATTCTATCAATTTTTCGATG</left_flank>
        <right_flank>TTTTCACCGTGTTTTTCGATTATTTCCATCATTTTAAGCTTTCTGGTTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAAATTGAGGTTCCAAGAAATCTTGGGAAAATTTATTGTTTAAATTATTAGATGTACAAAAATTTTATTGAGATTCATGATTACAGCACCTTTGCCAATCCAAGCTTTCCATTCTGCATATCGTGCACATGACAATAGGCACGCATGAATGGTGGTCCCAGCATCCAAGCTGGGTAGAATCCTCCAGCAGTCAACTCGTAGAAAGCAAACATGCATGGACCTGGTCCAGCAGAGACAACGAACGAAGTGGATGGCATATTATATGTCTTTCCGTTGATGGTGAATACGATATCAGGGACAACAGCGTCACAATCAATGAAGAATGCTCCGGTTCCAGGGACATAGGTAGCACCAACACTGAAAAGAAAAGTTCTTATTGAACTAAATCATACTATAATTCTTGTCTGAAATCAATGAATGTAGAGGCTCAAGAGTGAACTACCGTATCTTTTGAGCTATTTCAATTATCATTTTCCAATTCTATCAATTTTTCGATGCTTTTCACCGTGTTTTTCGATTATTTCCATCATTTTAAGCTTTCTGGTTTACATCGACAAAGAAGTGACAATTGTAGAAAAAAAGGAACATAGTATTTAAAGCAGGCTCAAAGAATACGGTAGTTCGCTTTTTCGCTTTCGAAGAAAATTTAACGAGATATCCGCGCTCAACATGCCTTGACTTCAGCTAAGATTATAAATTTCTTACGTCTTGGCCAAACTAGTGACGACACTCTTTGGAGCTCCGATGAAAGAGGCAGCAGTGTCAGCAGCAGCTTGCCATCCAGCTGTCGGGTTCTGTGAGTATGATCCAGAAGAGACTCTATAAAAAAATTAATCAAGAAACCAATTGGATCAGCTTACACTTACCCAGAAAGTTTGAATTGCCAGAAAGTTTGAGTTGTCAATGGGACCCAGTCGACATTGGCGTTGCAATGAGTGGTGTCAAGTCCTCCAACGGTGAATGCTCCTCCATTGATTTGAGATGTTGGACCGATTTGT</canonical>
            <polymorphic>AATAAATTGAGGTTCCAAGAAATCTTGGGAAAATTTATTGTTTAAATTATTAGATGTACAAAAATTTTATTGAGATTCATGATTACAGCACCTTTGCCAATCCAAGCTTTCCATTCTGCATATCGTGCACATGACAATAGGCACGCATGAATGGTGGTCCCAGCATCCAAGCTGGGTAGAATCCTCCAGCAGTCAACTCGTAGAAAGCAAACATGCATGGACCTGGTCCAGCAGAGACAACGAACGAAGTGGATGGCATATTATATGTCTTTCCGTTGATGGTGAATACGATATCAGGGACAACAGCGTCACAATCAATGAAGAATGCTCCGGTTCCAGGGACATAGGTAGCACCAACACTGAAAAGAAAAGTTCTTATTGAACTAAATCATACTATAATTCTTGTCTGAAATCAATGAATGTAGAGGCTCAAGAGTGAACTACCGTATCTTTTGAGCTATTTCAATTATCATTTTCCAATTCTATCAATTTTTCGATGMTTTTCACCGTGTTTTTCGATTATTTCCATCATTTTAAGCTTTCTGGTTTACATCGACAAAGAAGTGACAATTGTAGAAAAAAAGGAACATAGTATTTAAAGCAGGCTCAAAGAATACGGTAGTTCGCTTTTTCGCTTTCGAAGAAAATTTAACGAGATATCCGCGCTCAACATGCCTTGACTTCAGCTAAGATTATAAATTTCTTACGTCTTGGCCAAACTAGTGACGACACTCTTTGGAGCTCCGATGAAAGAGGCAGCAGTGTCAGCAGCAGCTTGCCATCCAGCTGTCGGGTTCTGTGAGTATGATCCAGAAGAGACTCTATAAAAAAATTAATCAAGAAACCAATTGGATCAGCTTACACTTACCCAGAAAGTTTGAATTGCCAGAAAGTTTGAGTTGTCAATGGGACCCAGTCGACATTGGCGTTGCAATGAGTGGTGTCAAGTCCTCCAACGGTGAATGCTCCTCCATTGATTTGAGATGTTGGACCGATTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATGAATGTAGAGGCTCAAG</pcr_primer_p1>
		<pcr_primer_p2>CGGATATCTCGTTAAATTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAATGAATGTAGAGGCTCAAGAGTGAACTACCGTATCTTTTGAGCTATTTCAATTATCATTTTCCAATTCTATCAATTTTTCGATGCTTTTCACCGTGTTTTTCGATTATTTCCATCATTTTAAGCTTTCTGGTTTACATCGACAAAGAAGTGACAATTGTAGAAAAAAAGGAACATAGTATTTAAAGCAGGCTCAAAGAATACGGTAGTTCGCTTTTTCGCTTTCGAAGAAAATTTAACGAGATATCCG</canonical_amplicon>
		<polymorphic_amplicon>CAATGAATGTAGAGGCTCAAGAGTGAACTACCGTATCTTTTGAGCTATTTCAATTATCATTTTCCAATTCTATCAATTTTTCGATGMTTTTCACCGTGTTTTTCGATTATTTCCATCATTTTAAGCTTTCTGGTTTACATCGACAAAGAAGTGACAATTGTAGAAAAAAAGGAACATAGTATTTAAAGCAGGCTCAAAGAATACGGTAGTTCGCTTTTTCGCTTTCGAAGAAAATTTAACGAGATATCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23625</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>91978</contig_pos>
        <strand>+</strand>
        <context>AAGGAACATA[A/G]TATTTAAAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGGTTTACATCGACAAAGAAGTGACAATTGTAGAAAAAAAGGAACATA</left_flank>
        <right_flank>TATTTAAAGCAGGCTCAAAGAATACGGTAGTTCGCTTTTTCGCTTTCGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGCCAATCCAAGCTTTCCATTCTGCATATCGTGCACATGACAATAGGCACGCATGAATGGTGGTCCCAGCATCCAAGCTGGGTAGAATCCTCCAGCAGTCAACTCGTAGAAAGCAAACATGCATGGACCTGGTCCAGCAGAGACAACGAACGAAGTGGATGGCATATTATATGTCTTTCCGTTGATGGTGAATACGATATCAGGGACAACAGCGTCACAATCAATGAAGAATGCTCCGGTTCCAGGGACATAGGTAGCACCAACACTGAAAAGAAAAGTTCTTATTGAACTAAATCATACTATAATTCTTGTCTGAAATCAATGAATGTAGAGGCTCAAGAGTGAACTACCGTATCTTTTGAGCTATTTCAATTATCATTTTCCAATTCTATCAATTTTTCGATGCTTTTCACCGTGTTTTTCGATTATTTCCATCATTTTAAGCTTTCTGGTTTACATCGACAAAGAAGTGACAATTGTAGAAAAAAAGGAACATAGTATTTAAAGCAGGCTCAAAGAATACGGTAGTTCGCTTTTTCGCTTTCGAAGAAAATTTAACGAGATATCCGCGCTCAACATGCCTTGACTTCAGCTAAGATTATAAATTTCTTACGTCTTGGCCAAACTAGTGACGACACTCTTTGGAGCTCCGATGAAAGAGGCAGCAGTGTCAGCAGCAGCTTGCCATCCAGCTGTCGGGTTCTGTGAGTATGATCCAGAAGAGACTCTATAAAAAAATTAATCAAGAAACCAATTGGATCAGCTTACACTTACCCAGAAAGTTTGAATTGCCAGAAAGTTTGAGTTGTCAATGGGACCCAGTCGACATTGGCGTTGCAATGAGTGGTGTCAAGTCCTCCAACGGTGAATGCTCCTCCATTGATTTGAGATGTTGGACCGATTTGTGCAAGATATACGACAAAGTATGGTTGATCAAGTTTTCCTTGGTTCATCAAATTAAATAGTGGTGGAGTCTGTTGGTTGACCGCAAGTGCTGG</canonical>
            <polymorphic>TTTGCCAATCCAAGCTTTCCATTCTGCATATCGTGCACATGACAATAGGCACGCATGAATGGTGGTCCCAGCATCCAAGCTGGGTAGAATCCTCCAGCAGTCAACTCGTAGAAAGCAAACATGCATGGACCTGGTCCAGCAGAGACAACGAACGAAGTGGATGGCATATTATATGTCTTTCCGTTGATGGTGAATACGATATCAGGGACAACAGCGTCACAATCAATGAAGAATGCTCCGGTTCCAGGGACATAGGTAGCACCAACACTGAAAAGAAAAGTTCTTATTGAACTAAATCATACTATAATTCTTGTCTGAAATCAATGAATGTAGAGGCTCAAGAGTGAACTACCGTATCTTTTGAGCTATTTCAATTATCATTTTCCAATTCTATCAATTTTTCGATGCTTTTCACCGTGTTTTTCGATTATTTCCATCATTTTAAGCTTTCTGGTTTACATCGACAAAGAAGTGACAATTGTAGAAAAAAAGGAACATARTATTTAAAGCAGGCTCAAAGAATACGGTAGTTCGCTTTTTCGCTTTCGAAGAAAATTTAACGAGATATCCGCGCTCAACATGCCTTGACTTCAGCTAAGATTATAAATTTCTTACGTCTTGGCCAAACTAGTGACGACACTCTTTGGAGCTCCGATGAAAGAGGCAGCAGTGTCAGCAGCAGCTTGCCATCCAGCTGTCGGGTTCTGTGAGTATGATCCAGAAGAGACTCTATAAAAAAATTAATCAAGAAACCAATTGGATCAGCTTACACTTACCCAGAAAGTTTGAATTGCCAGAAAGTTTGAGTTGTCAATGGGACCCAGTCGACATTGGCGTTGCAATGAGTGGTGTCAAGTCCTCCAACGGTGAATGCTCCTCCATTGATTTGAGATGTTGGACCGATTTGTGCAAGATATACGACAAAGTATGGTTGATCAAGTTTTCCTTGGTTCATCAAATTAAATAGTGGTGGAGTCTGTTGGTTGACCGCAAGTGCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATGAATGTAGAGGCTCAAG</pcr_primer_p1>
		<pcr_primer_p2>CGGATATCTCGTTAAATTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAATGAATGTAGAGGCTCAAGAGTGAACTACCGTATCTTTTGAGCTATTTCAATTATCATTTTCCAATTCTATCAATTTTTCGATGCTTTTCACCGTGTTTTTCGATTATTTCCATCATTTTAAGCTTTCTGGTTTACATCGACAAAGAAGTGACAATTGTAGAAAAAAAGGAACATAGTATTTAAAGCAGGCTCAAAGAATACGGTAGTTCGCTTTTTCGCTTTCGAAGAAAATTTAACGAGATATCCG</canonical_amplicon>
		<polymorphic_amplicon>CAATGAATGTAGAGGCTCAAGAGTGAACTACCGTATCTTTTGAGCTATTTCAATTATCATTTTCCAATTCTATCAATTTTTCGATGCTTTTCACCGTGTTTTTCGATTATTTCCATCATTTTAAGCTTTCTGGTTTACATCGACAAAGAAGTGACAATTGTAGAAAAAAAGGAACATARTATTTAAAGCAGGCTCAAAGAATACGGTAGTTCGCTTTTTCGCTTTCGAAGAAAATTTAACGAGATATCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23626</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>93682</contig_pos>
        <strand>+</strand>
        <context>TGTGTGCAGT[A/G]AAACCTGGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGCATCGTAAGGTGATACCGTATCACTGCTACTGTGGGATGTGTGCAGT</left_flank>
        <right_flank>AAACCTGGTAAGTTATTGTTGTCGAAACTGAAAATTGATAGCCTGGAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTTTCCCTCAGCGTTAAGACGCTGACGAAGGTTTGGTCGGTATCTGAAAAATGTAATTGTATGGATTTTTCAGTGTTTTCGCGGACTCACCCAATATTGAATTGATGGACTTCTGCAGAGACCACGGTCAAAATAGCCAGAAAACCAACAAACATCTTCATCGTTGGTTTTACCTGCAATTTTCCAAATAAATCATAAAATTAACTGTGTCAACTACATAAAAAAGTGTGAAACACACTAATTTTCTTGGTGGCACTATCAGCATTTCGGTAATCAGAATTTATAGTAGAGATAGGAGGAGCAGGAGACATATGATGCAACTAATGACTATCATATTATGCTAAAAAATGGGCGGCTTGGTGTTGAAGTTCGGCAATTCTAGAATTCTTTGAATCCGGAAGTTTTTTGGAGTTATGTTTTGTGTTATACTTCGTCATGTTTTCGTCATGGCATCGTAAGGTGATACCGTATCACTGCTACTGTGGGATGTGTGCAGTGAAACCTGGTAAGTTATTGTTGTCGAAACTGAAAATTGATAGCCTGGAACTTTCTGACTGGTATTTTCTTTGACTTGCCCCATGCTTGACCAAGGATCGCCAAGGGTTGACCAAGGCTTGCCCGAGATTTGCCCATGAATTTTACTTGGCTTGTCCATGGCTTGACCAAATTTTCCATTTTCTGCGAAACTCAAAATCATCTGAATCTCTTCCCACCCTGGAATTAGTGCATATTGTAATCATTTAGCCATAAAAGCTATAAAAATAAACAAAGCCATGAAAATAAAATTTTATAAATATGTTATCGTGATTCTTCCAATATCGTGAAGCTGAAAAACAGAACATCGATAGATTTAAGGATTTTAGTTATAATACAATAAACACTCTATAAGAATGTCACTCAAACTGTCAACTTCGAGCCTCTATATCTCGGTCACTGTAAGAAATAAATAAAAATATTTAACAGACAAAACATTATCGAATTTAAGATAAATAACTTGT</canonical>
            <polymorphic>AACTTTCCCTCAGCGTTAAGACGCTGACGAAGGTTTGGTCGGTATCTGAAAAATGTAATTGTATGGATTTTTCAGTGTTTTCGCGGACTCACCCAATATTGAATTGATGGACTTCTGCAGAGACCACGGTCAAAATAGCCAGAAAACCAACAAACATCTTCATCGTTGGTTTTACCTGCAATTTTCCAAATAAATCATAAAATTAACTGTGTCAACTACATAAAAAAGTGTGAAACACACTAATTTTCTTGGTGGCACTATCAGCATTTCGGTAATCAGAATTTATAGTAGAGATAGGAGGAGCAGGAGACATATGATGCAACTAATGACTATCATATTATGCTAAAAAATGGGCGGCTTGGTGTTGAAGTTCGGCAATTCTAGAATTCTTTGAATCCGGAAGTTTTTTGGAGTTATGTTTTGTGTTATACTTCGTCATGTTTTCGTCATGGCATCGTAAGGTGATACCGTATCACTGCTACTGTGGGATGTGTGCAGTRAAACCTGGTAAGTTATTGTTGTCGAAACTGAAAATTGATAGCCTGGAACTTTCTGACTGGTATTTTCTTTGACTTGCCCCATGCTTGACCAAGGATCGCCAAGGGTTGACCAAGGCTTGCCCGAGATTTGCCCATGAATTTTACTTGGCTTGTCCATGGCTTGACCAAATTTTCCATTTTCTGCGAAACTCAAAATCATCTGAATCTCTTCCCACCCTGGAATTAGTGCATATTGTAATCATTTAGCCATAAAAGCTATAAAAATAAACAAAGCCATGAAAATAAAATTTTATAAATATGTTATCGTGATTCTTCCAATATCGTGAAGCTGAAAAACAGAACATCGATAGATTTAAGGATTTTAGTTATAATACAATAAACACTCTATAAGAATGTCACTCAAACTGTCAACTTCGAGCCTCTATATCTCGGTCACTGTAAGAAATAAATAAAAATATTTAACAGACAAAACATTATCGAATTTAAGATAAATAACTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>214 107 85 80 77 65 61 57 39 37 35 19 17 16 15 14 14 11 11 7 5 5 3 2 2 2</canonical_bands>
                <polymorphic_bands>219 107 85 80 77 65 61 57 39 37 35 19 17 16 15 14 14 11 11 7 5 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGGAGTTATGTTTTGTGTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTAAAATTCATGGGCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGGAGTTATGTTTTGTGTTATACTTCGTCATGTTTTCGTCATGGCATCGTAAGGTGATACCGTATCACTGCTACTGTGGGATGTGTGCAGTGAAACCTGGTAAGTTATTGTTGTCGAAACTGAAAATTGATAGCCTGGAACTTTCTGACTGGTATTTTCTTTGACTTGCCCCATGCTTGACCAAGGATCGCCAAGGGTTGACCAAGGCTTGCCCGAGATTTGCCCATGAATTTTACTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGGAGTTATGTTTTGTGTTATACTTCGTCATGTTTTCGTCATGGCATCGTAAGGTGATACCGTATCACTGCTACTGTGGGATGTGTGCAGTRAAACCTGGTAAGTTATTGTTGTCGAAACTGAAAATTGATAGCCTGGAACTTTCTGACTGGTATTTTCTTTGACTTGCCCCATGCTTGACCAAGGATCGCCAAGGGTTGACCAAGGCTTGCCCGAGATTTGCCCATGAATTTTACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23627</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>93897</contig_pos>
        <strand>+</strand>
        <context>TCTCTTCCCA[C/T]CCTGGAATTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAAATTTTCCATTTTCTGCGAAACTCAAAATCATCTGAATCTCTTCCCA</left_flank>
        <right_flank>CCTGGAATTAGTGCATATTGTAATCATTTAGCCATAAAAGCTATAAAAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTACATAAAAAAGTGTGAAACACACTAATTTTCTTGGTGGCACTATCAGCATTTCGGTAATCAGAATTTATAGTAGAGATAGGAGGAGCAGGAGACATATGATGCAACTAATGACTATCATATTATGCTAAAAAATGGGCGGCTTGGTGTTGAAGTTCGGCAATTCTAGAATTCTTTGAATCCGGAAGTTTTTTGGAGTTATGTTTTGTGTTATACTTCGTCATGTTTTCGTCATGGCATCGTAAGGTGATACCGTATCACTGCTACTGTGGGATGTGTGCAGTGAAACCTGGTAAGTTATTGTTGTCGAAACTGAAAATTGATAGCCTGGAACTTTCTGACTGGTATTTTCTTTGACTTGCCCCATGCTTGACCAAGGATCGCCAAGGGTTGACCAAGGCTTGCCCGAGATTTGCCCATGAATTTTACTTGGCTTGTCCATGGCTTGACCAAATTTTCCATTTTCTGCGAAACTCAAAATCATCTGAATCTCTTCCCACCCTGGAATTAGTGCATATTGTAATCATTTAGCCATAAAAGCTATAAAAATAAACAAAGCCATGAAAATAAAATTTTATAAATATGTTATCGTGATTCTTCCAATATCGTGAAGCTGAAAAACAGAACATCGATAGATTTAAGGATTTTAGTTATAATACAATAAACACTCTATAAGAATGTCACTCAAACTGTCAACTTCGAGCCTCTATATCTCGGTCACTGTAAGAAATAAATAAAAATATTTAACAGACAAAACATTATCGAATTTAAGATAAATAACTTGTCAGTTGACCACTTTTTAATATCTGTCAGAGGAACCGAGATATATGGGCTTAAAGTTGACGGCTTGGGTGGGCTTTTATTGGAGTGTTCACTTTGGGGTTCTCGTAATTTCATTGAAACATTCGTAAATATTTTTAATGTTCATTATATCCAATATGGTCATGCAAATTTATAAGTTAAAATTATATTGAAAAGTATTATCAATCACAGAAACACA</canonical>
            <polymorphic>CTACATAAAAAAGTGTGAAACACACTAATTTTCTTGGTGGCACTATCAGCATTTCGGTAATCAGAATTTATAGTAGAGATAGGAGGAGCAGGAGACATATGATGCAACTAATGACTATCATATTATGCTAAAAAATGGGCGGCTTGGTGTTGAAGTTCGGCAATTCTAGAATTCTTTGAATCCGGAAGTTTTTTGGAGTTATGTTTTGTGTTATACTTCGTCATGTTTTCGTCATGGCATCGTAAGGTGATACCGTATCACTGCTACTGTGGGATGTGTGCAGTGAAACCTGGTAAGTTATTGTTGTCGAAACTGAAAATTGATAGCCTGGAACTTTCTGACTGGTATTTTCTTTGACTTGCCCCATGCTTGACCAAGGATCGCCAAGGGTTGACCAAGGCTTGCCCGAGATTTGCCCATGAATTTTACTTGGCTTGTCCATGGCTTGACCAAATTTTCCATTTTCTGCGAAACTCAAAATCATCTGAATCTCTTCCCAYCCTGGAATTAGTGCATATTGTAATCATTTAGCCATAAAAGCTATAAAAATAAACAAAGCCATGAAAATAAAATTTTATAAATATGTTATCGTGATTCTTCCAATATCGTGAAGCTGAAAAACAGAACATCGATAGATTTAAGGATTTTAGTTATAATACAATAAACACTCTATAAGAATGTCACTCAAACTGTCAACTTCGAGCCTCTATATCTCGGTCACTGTAAGAAATAAATAAAAATATTTAACAGACAAAACATTATCGAATTTAAGATAAATAACTTGTCAGTTGACCACTTTTTAATATCTGTCAGAGGAACCGAGATATATGGGCTTAAAGTTGACGGCTTGGGTGGGCTTTTATTGGAGTGTTCACTTTGGGGTTCTCGTAATTTCATTGAAACATTCGTAAATATTTTTAATGTTCATTATATCCAATATGGTCATGCAAATTTATAAGTTAAAATTATATTGAAAAGTATTATCAATCACAGAAACACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>500 374 61 44 11 10</canonical_bands>
                <polymorphic_bands>561 374 44 11 10</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>214 116 107 80 75 61 59 57 39 37 17 16 16 15 15 14 11 11 8 7 5 5 4 3 2 2 2 2</canonical_bands>
                <polymorphic_bands>228 116 107 80 75 61 59 57 39 37 17 16 16 15 15 11 11 8 7 5 5 4 3 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTGATAGCCTGGAACTTT</pcr_primer_p1>
		<pcr_primer_p2>GGCTTTGTTTATTTTTATAGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAAATTGATAGCCTGGAACTTTCTGACTGGTATTTTCTTTGACTTGCCCCATGCTTGACCAAGGATCGCCAAGGGTTGACCAAGGCTTGCCCGAGATTTGCCCATGAATTTTACTTGGCTTGTCCATGGCTTGACCAAATTTTCCATTTTCTGCGAAACTCAAAATCATCTGAATCTCTTCCCACCCTGGAATTAGTGCATATTGTAATCATTTAGCCATAAAAGCTATAAAAATAAACAAAGCC</canonical_amplicon>
		<polymorphic_amplicon>AAAATTGATAGCCTGGAACTTTCTGACTGGTATTTTCTTTGACTTGCCCCATGCTTGACCAAGGATCGCCAAGGGTTGACCAAGGCTTGCCCGAGATTTGCCCATGAATTTTACTTGGCTTGTCCATGGCTTGACCAAATTTTCCATTTTCTGCGAAACTCAAAATCATCTGAATCTCTTCCCAYCCTGGAATTAGTGCATATTGTAATCATTTAGCCATAAAAGCTATAAAAATAAACAAAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23628</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>94122</contig_pos>
        <strand></strand>
        <context>cggtcactgt[A/G]agaaataaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAATGTCACTCAAACTGTCAACTTCGAGCCTCTATATCTCGGTCACTGT</left_flank>
        <right_flank>AGAAATAAATAAAAATATTTAACAGACAAAACATTATCGAATTTAAGATA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCGTCATGGCATCGTAAGGTGATACCGTATCACTGCTACTGTGGGATGTGTGCAGTGAAACCTGGTAAGTTATTGTTGTCGAAACTGAAAATTGATAGCCTGGAACTTTCTGACTGGTATTTTCTTTGACTTGCCCCATGCTTGACCAAGGATCGCCAAGGGTTGACCAAGGCTTGCCCGAGATTTGCCCATGAATTTTACTTGGCTTGTCCATGGCTTGACCAAATTTTCCATTTTCTGCGAAACTCAAAATCATCTGAATCTCTTCCCACCCTGGAATTAGTGCATATTGTAATCATTTAGCCATAAAAGCTATAAAAATAAACAAAGCCATGAAAATAAAATTTTATAAATATGTTATCGTGATTCTTCCAATATCGTGAAGCTGAAAAACAGAACATCGATAGATTTAAGGATTTTAGTTATAATACAATAAACACTCTATAAGAATGTCACTCAAACTGTCAACTTCGAGCCTCTATATCTCGGTCACTGTAAGAAATAAATAAAAATATTTAACAGACAAAACATTATCGAATTTAAGATAAATAACTTGTCAGTTGACCACTTTTTAATATCTGTCAGAGGAACCGAGATATATGGGCTTAAAGTTGACGGCTTGGGTGGGCTTTTATTGGAGTGTTCACTTTGGGGTTCTCGTAATTTCATTGAAACATTCGTAAATATTTTTAATGTTCATTATATCCAATATGGTCATGCAAATTTATAAGTTAAAATTATATTGAAAAGTATTATCAATCACAGAAACACATAACGAATGAAAGCTCTTTTTTAAACATTTCTACCCGGGGGAATACTGATCTGAATGAAAGACAATATGTGGAAAGATCTAGAGTATTATAAAATCATAGAGTTAAGTAAAAATATATCACAGAGATAACAGGAGATAGAGATTCTAGAGTACTTGATTTTTTTATACAGCCCAACTTCTTTTTCGGTTGTAATAGTCAAATTGGTGAGGAAGGGAAGGTTGGGA</canonical>
            <polymorphic>TTTTCGTCATGGCATCGTAAGGTGATACCGTATCACTGCTACTGTGGGATGTGTGCAGTGAAACCTGGTAAGTTATTGTTGTCGAAACTGAAAATTGATAGCCTGGAACTTTCTGACTGGTATTTTCTTTGACTTGCCCCATGCTTGACCAAGGATCGCCAAGGGTTGACCAAGGCTTGCCCGAGATTTGCCCATGAATTTTACTTGGCTTGTCCATGGCTTGACCAAATTTTCCATTTTCTGCGAAACTCAAAATCATCTGAATCTCTTCCCACCCTGGAATTAGTGCATATTGTAATCATTTAGCCATAAAAGCTATAAAAATAAACAAAGCCATGAAAATAAAATTTTATAAATATGTTATCGTGATTCTTCCAATATCGTGAAGCTGAAAAACAGAACATCGATAGATTTAAGGATTTTAGTTATAATACAATAAACACTCTATAAGAATGTCACTCAAACTGTCAACTTCGAGCCTCTATATCTCGGTCACTGTRAGAAATAAATAAAAATATTTAACAGACAAAACATTATCGAATTTAAGATAAATAACTTGTCAGTTGACCACTTTTTAATATCTGTCAGAGGAACCGAGATATATGGGCTTAAAGTTGACGGCTTGGGTGGGCTTTTATTGGAGTGTTCACTTTGGGGTTCTCGTAATTTCATTGAAACATTCGTAAATATTTTTAATGTTCATTATATCCAATATGGTCATGCAAATTTATAAGTTAAAATTATATTGAAAAGTATTATCAATCACAGAAACACATAACGAATGAAAGCTCTTTTTTAAACATTTCTACCCGGGGGAATACTGATCTGAATGAAAGACAATATGTGGAAAGATCTAGAGTATTATAAAATCATAGAGTTAAGTAAAAATATATCACAGAGATAACAGGAGATAGAGATTCTAGAGTACTTGATTTTTTTATACAGCCCAACTTCTTTTTCGGTTGTAATAGTCAAATTGGTGAGGAAGGGAAGGTTGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATCGATAGATTTAAGGATTTTAG</pcr_primer_p1>
		<pcr_primer_p2>AATTACGAGAACCCCAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>ACATCGATAGATTTAAGGATTTTAGTTATAATACAATAAACACTCTATAAGAATGTCACTCAAACTGTCAACTTCGAGCCTCTATATCTCGGTCACTGTAAGAAATAAATAAAAATATTTAACAGACAAAACATTATCGAATTTAAGATAAATAACTTGTCAGTTGACCACTTTTTAATATCTGTCAGAGGAACCGAGATATATGGGCTTAAAGTTGACGGCTTGGGTGGGCTTTTATTGGAGTGTTCACTTTGGGGTTCTCGTAATT</canonical_amplicon>
		<polymorphic_amplicon>ACATCGATAGATTTAAGGATTTTAGTTATAATACAATAAACACTCTATAAGAATGTCACTCAAACTGTCAACTTCGAGCCTCTATATCTCGGTCACTGTRAGAAATAAATAAAAATATTTAACAGACAAAACATTATCGAATTTAAGATAAATAACTTGTCAGTTGACCACTTTTTAATATCTGTCAGAGGAACCGAGATATATGGGCTTAAAGTTGACGGCTTGGGTGGGCTTTTATTGGAGTGTTCACTTTGGGGTTCTCGTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23629</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>94257</contig_pos>
        <strand></strand>
        <context>gggtgggctt[T/C]tattKGAGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCAGAGGAACCGAGATATATGGGCTTAAAGTTGACGGCTTGGGTGGGCTT</left_flank>
        <right_flank>TATTGGAGTGTTCACTTTGGGGTTCTCGTAATTTCATTGAAACATTCGTA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCCCATGCTTGACCAAGGATCGCCAAGGGTTGACCAAGGCTTGCCCGAGATTTGCCCATGAATTTTACTTGGCTTGTCCATGGCTTGACCAAATTTTCCATTTTCTGCGAAACTCAAAATCATCTGAATCTCTTCCCACCCTGGAATTAGTGCATATTGTAATCATTTAGCCATAAAAGCTATAAAAATAAACAAAGCCATGAAAATAAAATTTTATAAATATGTTATCGTGATTCTTCCAATATCGTGAAGCTGAAAAACAGAACATCGATAGATTTAAGGATTTTAGTTATAATACAATAAACACTCTATAAGAATGTCACTCAAACTGTCAACTTCGAGCCTCTATATCTCGGTCACTGTAAGAAATAAATAAAAATATTTAACAGACAAAACATTATCGAATTTAAGATAAATAACTTGTCAGTTGACCACTTTTTAATATCTGTCAGAGGAACCGAGATATATGGGCTTAAAGTTGACGGCTTGGGTGGGCTTTTATTGGAGTGTTCACTTTGGGGTTCTCGTAATTTCATTGAAACATTCGTAAATATTTTTAATGTTCATTATATCCAATATGGTCATGCAAATTTATAAGTTAAAATTATATTGAAAAGTATTATCAATCACAGAAACACATAACGAATGAAAGCTCTTTTTTAAACATTTCTACCCGGGGGAATACTGATCTGAATGAAAGACAATATGTGGAAAGATCTAGAGTATTATAAAATCATAGAGTTAAGTAAAAATATATCACAGAGATAACAGGAGATAGAGATTCTAGAGTACTTGATTTTTTTATACAGCCCAACTTCTTTTTCGGTTGTAATAGTCAAATTGGTGAGGAAGGGAAGGTTGGGAATGATGAAAATGTTGATGGAGATGTTGATGATGGAATATGAAGTTCGAGTGATTGTTATAATTCACAGGAGGGCATGACATAGGAGGAGTTGTCTGCATTTGATTCATTTGAATATTATGATGAAGATGATGTAG</canonical>
            <polymorphic>GCCCCATGCTTGACCAAGGATCGCCAAGGGTTGACCAAGGCTTGCCCGAGATTTGCCCATGAATTTTACTTGGCTTGTCCATGGCTTGACCAAATTTTCCATTTTCTGCGAAACTCAAAATCATCTGAATCTCTTCCCACCCTGGAATTAGTGCATATTGTAATCATTTAGCCATAAAAGCTATAAAAATAAACAAAGCCATGAAAATAAAATTTTATAAATATGTTATCGTGATTCTTCCAATATCGTGAAGCTGAAAAACAGAACATCGATAGATTTAAGGATTTTAGTTATAATACAATAAACACTCTATAAGAATGTCACTCAAACTGTCAACTTCGAGCCTCTATATCTCGGTCACTGTAAGAAATAAATAAAAATATTTAACAGACAAAACATTATCGAATTTAAGATAAATAACTTGTCAGTTGACCACTTTTTAATATCTGTCAGAGGAACCGAGATATATGGGCTTAAAGTTGACGGCTTGGGTGGGCTTYTATTGGAGTGTTCACTTTGGGGTTCTCGTAATTTCATTGAAACATTCGTAAATATTTTTAATGTTCATTATATCCAATATGGTCATGCAAATTTATAAGTTAAAATTATATTGAAAAGTATTATCAATCACAGAAACACATAACGAATGAAAGCTCTTTTTTAAACATTTCTACCCGGGGGAATACTGATCTGAATGAAAGACAATATGTGGAAAGATCTAGAGTATTATAAAATCATAGAGTTAAGTAAAAATATATCACAGAGATAACAGGAGATAGAGATTCTAGAGTACTTGATTTTTTTATACAGCCCAACTTCTTTTTCGGTTGTAATAGTCAAATTGGTGAGGAAGGGAAGGTTGGGAATGATGAAAATGTTGATGGAGATGTTGATGATGGAATATGAAGTTCGAGTGATTGTTATAATTCACAGGAGGGCATGACATAGGAGGAGTTGTCTGCATTTGATTCATTTGAATATTATGATGAAGATGATGTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGAACATCGATAGATTTAAGG</pcr_primer_p1>
		<pcr_primer_p2>AAAATATTTACGAATGTTTCAATG</pcr_primer_p2>
		<pcr_amplicon_size>298</pcr_amplicon_size>
		<canonical_amplicon>ACAGAACATCGATAGATTTAAGGATTTTAGTTATAATACAATAAACACTCTATAAGAATGTCACTCAAACTGTCAACTTCGAGCCTCTATATCTCGGTCACTGTAAGAAATAAATAAAAATATTTAACAGACAAAACATTATCGAATTTAAGATAAATAACTTGTCAGTTGACCACTTTTTAATATCTGTCAGAGGAACCGAGATATATGGGCTTAAAGTTGACGGCTTGGGTGGGCTTTTATTGGAGTGTTCACTTTGGGGTTCTCGTAATTTCATTGAAACATTCGTAAATATTTT</canonical_amplicon>
		<polymorphic_amplicon>ACAGAACATCGATAGATTTAAGGATTTTAGTTATAATACAATAAACACTCTATAAGAATGTCACTCAAACTGTCAACTTCGAGCCTCTATATCTCGGTCACTGTAAGAAATAAATAAAAATATTTAACAGACAAAACATTATCGAATTTAAGATAAATAACTTGTCAGTTGACCACTTTTTAATATCTGTCAGAGGAACCGAGATATATGGGCTTAAAGTTGACGGCTTGGGTGGGCTTYTATTGGAGTGTTCACTTTGGGGTTCTCGTAATTTCATTGAAACATTCGTAAATATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23630</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>94262</contig_pos>
        <strand></strand>
        <context>ggcttytatt[G/T]GAGTGTTCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGAACCGAGATATATGGGCTTAAAGTTGACGGCTTGGGTGGGCTTTTATT</left_flank>
        <right_flank>GAGTGTTCACTTTGGGGTTCTCGTAATTTCATTGAAACATTCGTAAATAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCTTGACCAAGGATCGCCAAGGGTTGACCAAGGCTTGCCCGAGATTTGCCCATGAATTTTACTTGGCTTGTCCATGGCTTGACCAAATTTTCCATTTTCTGCGAAACTCAAAATCATCTGAATCTCTTCCCACCCTGGAATTAGTGCATATTGTAATCATTTAGCCATAAAAGCTATAAAAATAAACAAAGCCATGAAAATAAAATTTTATAAATATGTTATCGTGATTCTTCCAATATCGTGAAGCTGAAAAACAGAACATCGATAGATTTAAGGATTTTAGTTATAATACAATAAACACTCTATAAGAATGTCACTCAAACTGTCAACTTCGAGCCTCTATATCTCGGTCACTGTAAGAAATAAATAAAAATATTTAACAGACAAAACATTATCGAATTTAAGATAAATAACTTGTCAGTTGACCACTTTTTAATATCTGTCAGAGGAACCGAGATATATGGGCTTAAAGTTGACGGCTTGGGTGGGCTTTTATTGGAGTGTTCACTTTGGGGTTCTCGTAATTTCATTGAAACATTCGTAAATATTTTTAATGTTCATTATATCCAATATGGTCATGCAAATTTATAAGTTAAAATTATATTGAAAAGTATTATCAATCACAGAAACACATAACGAATGAAAGCTCTTTTTTAAACATTTCTACCCGGGGGAATACTGATCTGAATGAAAGACAATATGTGGAAAGATCTAGAGTATTATAAAATCATAGAGTTAAGTAAAAATATATCACAGAGATAACAGGAGATAGAGATTCTAGAGTACTTGATTTTTTTATACAGCCCAACTTCTTTTTCGGTTGTAATAGTCAAATTGGTGAGGAAGGGAAGGTTGGGAATGATGAAAATGTTGATGGAGATGTTGATGATGGAATATGAAGTTCGAGTGATTGTTATAATTCACAGGAGGGCATGACATAGGAGGAGTTGTCTGCATTTGATTCATTTGAATATTATGATGAAGATGATGTAGTGGTG</canonical>
            <polymorphic>ATGCTTGACCAAGGATCGCCAAGGGTTGACCAAGGCTTGCCCGAGATTTGCCCATGAATTTTACTTGGCTTGTCCATGGCTTGACCAAATTTTCCATTTTCTGCGAAACTCAAAATCATCTGAATCTCTTCCCACCCTGGAATTAGTGCATATTGTAATCATTTAGCCATAAAAGCTATAAAAATAAACAAAGCCATGAAAATAAAATTTTATAAATATGTTATCGTGATTCTTCCAATATCGTGAAGCTGAAAAACAGAACATCGATAGATTTAAGGATTTTAGTTATAATACAATAAACACTCTATAAGAATGTCACTCAAACTGTCAACTTCGAGCCTCTATATCTCGGTCACTGTAAGAAATAAATAAAAATATTTAACAGACAAAACATTATCGAATTTAAGATAAATAACTTGTCAGTTGACCACTTTTTAATATCTGTCAGAGGAACCGAGATATATGGGCTTAAAGTTGACGGCTTGGGTGGGCTTTTATTKGAGTGTTCACTTTGGGGTTCTCGTAATTTCATTGAAACATTCGTAAATATTTTTAATGTTCATTATATCCAATATGGTCATGCAAATTTATAAGTTAAAATTATATTGAAAAGTATTATCAATCACAGAAACACATAACGAATGAAAGCTCTTTTTTAAACATTTCTACCCGGGGGAATACTGATCTGAATGAAAGACAATATGTGGAAAGATCTAGAGTATTATAAAATCATAGAGTTAAGTAAAAATATATCACAGAGATAACAGGAGATAGAGATTCTAGAGTACTTGATTTTTTTATACAGCCCAACTTCTTTTTCGGTTGTAATAGTCAAATTGGTGAGGAAGGGAAGGTTGGGAATGATGAAAATGTTGATGGAGATGTTGATGATGGAATATGAAGTTCGAGTGATTGTTATAATTCACAGGAGGGCATGACATAGGAGGAGTTGTCTGCATTTGATTCATTTGAATATTATGATGAAGATGATGTAGTGGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCGATAGATTTAAGGATTTTAGT</pcr_primer_p1>
		<pcr_primer_p2>TGACCATATTGGATATAATGAACA</pcr_primer_p2>
		<pcr_amplicon_size>319</pcr_amplicon_size>
		<canonical_amplicon>CATCGATAGATTTAAGGATTTTAGTTATAATACAATAAACACTCTATAAGAATGTCACTCAAACTGTCAACTTCGAGCCTCTATATCTCGGTCACTGTAAGAAATAAATAAAAATATTTAACAGACAAAACATTATCGAATTTAAGATAAATAACTTGTCAGTTGACCACTTTTTAATATCTGTCAGAGGAACCGAGATATATGGGCTTAAAGTTGACGGCTTGGGTGGGCTTTTATTGGAGTGTTCACTTTGGGGTTCTCGTAATTTCATTGAAACATTCGTAAATATTTTTAATGTTCATTATATCCAATATGGTCA</canonical_amplicon>
		<polymorphic_amplicon>CATCGATAGATTTAAGGATTTTAGTTATAATACAATAAACACTCTATAAGAATGTCACTCAAACTGTCAACTTCGAGCCTCTATATCTCGGTCACTGTAAGAAATAAATAAAAATATTTAACAGACAAAACATTATCGAATTTAAGATAAATAACTTGTCAGTTGACCACTTTTTAATATCTGTCAGAGGAACCGAGATATATGGGCTTAAAGTTGACGGCTTGGGTGGGCTTTTATTKGAGTGTTCACTTTGGGGTTCTCGTAATTTCATTGAAACATTCGTAAATATTTTTAATGTTCATTATATCCAATATGGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23631</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>109313</contig_pos>
        <strand>+</strand>
        <context>TGGCGATTTA[C/T]GGTAAACCGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGGATATTTTTCGAGATTAAAAAAATGAAGAAAACCTTATGGCGATTTA</left_flank>
        <right_flank>GGTAAACCGGGCGCAACTACGACACTCCGCGCGAACGTCGATACGATAGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAACATAGTAGGAATGAGATTTTCCAGCAGCTGAAAACATAATATTAACATGGAATGATTCAATTTCAACTTACCAGTTGGTGGTGTCCATCCACTCGGTGTTGGATAAGAATCATGTTTTGGGACTTCTGGTACCACTTCAATTGGCATCAATCTCTCCACAAAGCTCCAGTCAACAGGTACTTCTTCAACTGTTGCGAAAGTTTTTGCTGTAATTTCAGTATTTAAATCTGAAAAACAACATAATAACTAACTTTTTTCTGGAATAGCGTGCTTCCATGGATTCTCCCATAACTTTTCAATGTTTTTCACGGAGGAAGTTGAGAAGTACGATTGAGATCTACAGGCTGTTCGAGAGACGAGACTTCGCATTGTAGAGTTCAACATTTTTTTCTGAAAATTTTTAATATGTATTTTCGAGAAAACATTAACGAATTTGAAAGGTTATCCGGATATTTTTCGAGATTAAAAAAATGAAGAAAACCTTATGGCGATTTACGGTAAACCGGGCGCAACTACGACACTCCGCGCGAACGTCGATACGATAGAGCGCACTTGCAGCTACATTTTAGGCCAAGCCGAAATTTTTTTATTTATTTTCTTCTCGTTTTCAAGCCGATTTTTCCGTTTTTTTCCCGATTTTAAATCGAAATTAATGAGTTCCGTAACTGTATTGATACATCGCTCAACTTTTTGTGAATTTCTACCCTATCCCGATATCAATACGTTCTGAAATCATGTGAATTAGGTCGAGGAGTGGGAAATTTCATTTTCGAGCGATTATCTTGTAAATTGACCTTGTTTCTGTGTTTCGCTTATTTCACTTATTCATTTTTCAGGTAAAATGTCCGACGCACTCGTGTGGCAAGTCATCCGCAACAACAGCGCTTTCATCAGAACTCAGCGCGGAATCGGAAAGAGATTCTCCACTGAGAAGTTCAACCTCAAGAAGGTTAACAGCCCAAAGTACAGTGGACTCGCCAACAAGCACGCTATTGA</canonical>
            <polymorphic>CGAACATAGTAGGAATGAGATTTTCCAGCAGCTGAAAACATAATATTAACATGGAATGATTCAATTTCAACTTACCAGTTGGTGGTGTCCATCCACTCGGTGTTGGATAAGAATCATGTTTTGGGACTTCTGGTACCACTTCAATTGGCATCAATCTCTCCACAAAGCTCCAGTCAACAGGTACTTCTTCAACTGTTGCGAAAGTTTTTGCTGTAATTTCAGTATTTAAATCTGAAAAACAACATAATAACTAACTTTTTTCTGGAATAGCGTGCTTCCATGGATTCTCCCATAACTTTTCAATGTTTTTCACGGAGGAAGTTGAGAAGTACGATTGAGATCTACAGGCTGTTCGAGAGACGAGACTTCGCATTGTAGAGTTCAACATTTTTTTCTGAAAATTTTTAATATGTATTTTCGAGAAAACATTAACGAATTTGAAAGGTTATCCGGATATTTTTCGAGATTAAAAAAATGAAGAAAACCTTATGGCGATTTAYGGTAAACCGGGCGCAACTACGACACTCCGCGCGAACGTCGATACGATAGAGCGCACTTGCAGCTACATTTTAGGCCAAGCCGAAATTTTTTTATTTATTTTCTTCTCGTTTTCAAGCCGATTTTTCCGTTTTTTTCCCGATTTTAAATCGAAATTAATGAGTTCCGTAACTGTATTGATACATCGCTCAACTTTTTGTGAATTTCTACCCTATCCCGATATCAATACGTTCTGAAATCATGTGAATTAGGTCGAGGAGTGGGAAATTTCATTTTCGAGCGATTATCTTGTAAATTGACCTTGTTTCTGTGTTTCGCTTATTTCACTTATTCATTTTTCAGGTAAAATGTCCGACGCACTCGTGTGGCAAGTCATCCGCAACAACAGCGCTTTCATCAGAACTCAGCGCGGAATCGGAAAGAGATTCTCCACTGAGAAGTTCAACCTCAAGAAGGTTAACAGCCCAAAGTACAGTGGACTCGCCAACAAGCACGCTATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>307 301 194 170 28</canonical_bands>
                <polymorphic_bands>477 301 194 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCATTGTAGAGTTCAACATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTGAAAACGAGAAGAAAATAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GCATTGTAGAGTTCAACATTTTTTTCTGAAAATTTTTAATATGTATTTTCGAGAAAACATTAACGAATTTGAAAGGTTATCCGGATATTTTTCGAGATTAAAAAAATGAAGAAAACCTTATGGCGATTTACGGTAAACCGGGCGCAACTACGACACTCCGCGCGAACGTCGATACGATAGAGCGCACTTGCAGCTACATTTTAGGCCAAGCCGAAATTTTTTTATTTATTTTCTTCTCGTTTTCAAG</canonical_amplicon>
		<polymorphic_amplicon>GCATTGTAGAGTTCAACATTTTTTTCTGAAAATTTTTAATATGTATTTTCGAGAAAACATTAACGAATTTGAAAGGTTATCCGGATATTTTTCGAGATTAAAAAAATGAAGAAAACCTTATGGCGATTTAYGGTAAACCGGGCGCAACTACGACACTCCGCGCGAACGTCGATACGATAGAGCGCACTTGCAGCTACATTTTAGGCCAAGCCGAAATTTTTTTATTTATTTTCTTCTCGTTTTCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23632</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>109379</contig_pos>
        <strand>+</strand>
        <context>CTTGCAGCTA[C/T]ATTTTAGGCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTACGACACTCCGCGCGAACGTCGATACGATAGAGCGCACTTGCAGCTA</left_flank>
        <right_flank>ATTTTAGGCCAAGCCGAAATTTTTTTATTTATTTTCTTCTCGTTTTCAAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAACTTACCAGTTGGTGGTGTCCATCCACTCGGTGTTGGATAAGAATCATGTTTTGGGACTTCTGGTACCACTTCAATTGGCATCAATCTCTCCACAAAGCTCCAGTCAACAGGTACTTCTTCAACTGTTGCGAAAGTTTTTGCTGTAATTTCAGTATTTAAATCTGAAAAACAACATAATAACTAACTTTTTTCTGGAATAGCGTGCTTCCATGGATTCTCCCATAACTTTTCAATGTTTTTCACGGAGGAAGTTGAGAAGTACGATTGAGATCTACAGGCTGTTCGAGAGACGAGACTTCGCATTGTAGAGTTCAACATTTTTTTCTGAAAATTTTTAATATGTATTTTCGAGAAAACATTAACGAATTTGAAAGGTTATCCGGATATTTTTCGAGATTAAAAAAATGAAGAAAACCTTATGGCGATTTACGGTAAACCGGGCGCAACTACGACACTCCGCGCGAACGTCGATACGATAGAGCGCACTTGCAGCTACATTTTAGGCCAAGCCGAAATTTTTTTATTTATTTTCTTCTCGTTTTCAAGCCGATTTTTCCGTTTTTTTCCCGATTTTAAATCGAAATTAATGAGTTCCGTAACTGTATTGATACATCGCTCAACTTTTTGTGAATTTCTACCCTATCCCGATATCAATACGTTCTGAAATCATGTGAATTAGGTCGAGGAGTGGGAAATTTCATTTTCGAGCGATTATCTTGTAAATTGACCTTGTTTCTGTGTTTCGCTTATTTCACTTATTCATTTTTCAGGTAAAATGTCCGACGCACTCGTGTGGCAAGTCATCCGCAACAACAGCGCTTTCATCAGAACTCAGCGCGGAATCGGAAAGAGATTCTCCACTGAGAAGTTCAACCTCAAGAAGGTTAACAGCCCAAAGTACAGTGGACTCGCCAACAAGCACGCTATTGATGTCAGCGCCGCCCCAAAGGGAGTCGTCGTCTCCACCAAGAACGAGAGTAAGAACAGTTTTCCGTG</canonical>
            <polymorphic>TCAACTTACCAGTTGGTGGTGTCCATCCACTCGGTGTTGGATAAGAATCATGTTTTGGGACTTCTGGTACCACTTCAATTGGCATCAATCTCTCCACAAAGCTCCAGTCAACAGGTACTTCTTCAACTGTTGCGAAAGTTTTTGCTGTAATTTCAGTATTTAAATCTGAAAAACAACATAATAACTAACTTTTTTCTGGAATAGCGTGCTTCCATGGATTCTCCCATAACTTTTCAATGTTTTTCACGGAGGAAGTTGAGAAGTACGATTGAGATCTACAGGCTGTTCGAGAGACGAGACTTCGCATTGTAGAGTTCAACATTTTTTTCTGAAAATTTTTAATATGTATTTTCGAGAAAACATTAACGAATTTGAAAGGTTATCCGGATATTTTTCGAGATTAAAAAAATGAAGAAAACCTTATGGCGATTTACGGTAAACCGGGCGCAACTACGACACTCCGCGCGAACGTCGATACGATAGAGCGCACTTGCAGCTAYATTTTAGGCCAAGCCGAAATTTTTTTATTTATTTTCTTCTCGTTTTCAAGCCGATTTTTCCGTTTTTTTCCCGATTTTAAATCGAAATTAATGAGTTCCGTAACTGTATTGATACATCGCTCAACTTTTTGTGAATTTCTACCCTATCCCGATATCAATACGTTCTGAAATCATGTGAATTAGGTCGAGGAGTGGGAAATTTCATTTTCGAGCGATTATCTTGTAAATTGACCTTGTTTCTGTGTTTCGCTTATTTCACTTATTCATTTTTCAGGTAAAATGTCCGACGCACTCGTGTGGCAAGTCATCCGCAACAACAGCGCTTTCATCAGAACTCAGCGCGGAATCGGAAAGAGATTCTCCACTGAGAAGTTCAACCTCAAGAAGGTTAACAGCCCAAAGTACAGTGGACTCGCCAACAAGCACGCTATTGATGTCAGCGCCGCCCCAAAGGGAGTCGTCGTCTCCACCAAGAACGAGAGTAAGAACAGTTTTCCGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAACCTTATGGCGATTTA</pcr_primer_p1>
		<pcr_primer_p2>GATATCGGGATAGGGTAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AGAAAACCTTATGGCGATTTACGGTAAACCGGGCGCAACTACGACACTCCGCGCGAACGTCGATACGATAGAGCGCACTTGCAGCTACATTTTAGGCCAAGCCGAAATTTTTTTATTTATTTTCTTCTCGTTTTCAAGCCGATTTTTCCGTTTTTTTCCCGATTTTAAATCGAAATTAATGAGTTCCGTAACTGTATTGATACATCGCTCAACTTTTTGTGAATTTCTACCCTATCCCGATATC</canonical_amplicon>
		<polymorphic_amplicon>AGAAAACCTTATGGCGATTTACGGTAAACCGGGCGCAACTACGACACTCCGCGCGAACGTCGATACGATAGAGCGCACTTGCAGCTAYATTTTAGGCCAAGCCGAAATTTTTTTATTTATTTTCTTCTCGTTTTCAAGCCGATTTTTCCGTTTTTTTCCCGATTTTAAATCGAAATTAATGAGTTCCGTAACTGTATTGATACATCGCTCAACTTTTTGTGAATTTCTACCCTATCCCGATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23633</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>109440</contig_pos>
        <strand></strand>
        <context>CCGATTTTTC[C/T]GTTTTTTTYC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGCCGAAATTTTTTTATTTATTTTCTTCTCGTTTTCAAGCCGATTTTTC</left_flank>
        <right_flank>GTTTTTTTCCCGATTTTAAATCGAAATTAATGAGTTCCGTAACTGTATTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGGTACCACTTCAATTGGCATCAATCTCTCCACAAAGCTCCAGTCAACAGGTACTTCTTCAACTGTTGCGAAAGTTTTTGCTGTAATTTCAGTATTTAAATCTGAAAAACAACATAATAACTAACTTTTTTCTGGAATAGCGTGCTTCCATGGATTCTCCCATAACTTTTCAATGTTTTTCACGGAGGAAGTTGAGAAGTACGATTGAGATCTACAGGCTGTTCGAGAGACGAGACTTCGCATTGTAGAGTTCAACATTTTTTTCTGAAAATTTTTAATATGTATTTTCGAGAAAACATTAACGAATTTGAAAGGTTATCCGGATATTTTTCGAGATTAAAAAAATGAAGAAAACCTTATGGCGATTTACGGTAAACCGGGCGCAACTACGACACTCCGCGCGAACGTCGATACGATAGAGCGCACTTGCAGCTACATTTTAGGCCAAGCCGAAATTTTTTTATTTATTTTCTTCTCGTTTTCAAGCCGATTTTTCCGTTTTTTTCCCGATTTTAAATCGAAATTAATGAGTTCCGTAACTGTATTGATACATCGCTCAACTTTTTGTGAATTTCTACCCTATCCCGATATCAATACGTTCTGAAATCATGTGAATTAGGTCGAGGAGTGGGAAATTTCATTTTCGAGCGATTATCTTGTAAATTGACCTTGTTTCTGTGTTTCGCTTATTTCACTTATTCATTTTTCAGGTAAAATGTCCGACGCACTCGTGTGGCAAGTCATCCGCAACAACAGCGCTTTCATCAGAACTCAGCGCGGAATCGGAAAGAGATTCTCCACTGAGAAGTTCAACCTCAAGAAGGTTAACAGCCCAAAGTACAGTGGACTCGCCAACAAGCACGCTATTGATGTCAGCGCCGCCCCAAAGGGAGTCGTCGTCTCCACCAAGAACGAGAGTAAGAACAGTTTTCCGTGTACGCAATTCTAAATAACATTTTCCAGAGGGAAGACCAGCCAAGGCTGTCGCCACCGCCAC</canonical>
            <polymorphic>TTCTGGTACCACTTCAATTGGCATCAATCTCTCCACAAAGCTCCAGTCAACAGGTACTTCTTCAACTGTTGCGAAAGTTTTTGCTGTAATTTCAGTATTTAAATCTGAAAAACAACATAATAACTAACTTTTTTCTGGAATAGCGTGCTTCCATGGATTCTCCCATAACTTTTCAATGTTTTTCACGGAGGAAGTTGAGAAGTACGATTGAGATCTACAGGCTGTTCGAGAGACGAGACTTCGCATTGTAGAGTTCAACATTTTTTTCTGAAAATTTTTAATATGTATTTTCGAGAAAACATTAACGAATTTGAAAGGTTATCCGGATATTTTTCGAGATTAAAAAAATGAAGAAAACCTTATGGCGATTTACGGTAAACCGGGCGCAACTACGACACTCCGCGCGAACGTCGATACGATAGAGCGCACTTGCAGCTACATTTTAGGCCAAGCCGAAATTTTTTTATTTATTTTCTTCTCGTTTTCAAGCCGATTTTTCYGTTTTTTTCCCGATTTTAAATCGAAATTAATGAGTTCCGTAACTGTATTGATACATCGCTCAACTTTTTGTGAATTTCTACCCTATCCCGATATCAATACGTTCTGAAATCATGTGAATTAGGTCGAGGAGTGGGAAATTTCATTTTCGAGCGATTATCTTGTAAATTGACCTTGTTTCTGTGTTTCGCTTATTTCACTTATTCATTTTTCAGGTAAAATGTCCGACGCACTCGTGTGGCAAGTCATCCGCAACAACAGCGCTTTCATCAGAACTCAGCGCGGAATCGGAAAGAGATTCTCCACTGAGAAGTTCAACCTCAAGAAGGTTAACAGCCCAAAGTACAGTGGACTCGCCAACAAGCACGCTATTGATGTCAGCGCCGCCCCAAAGGGAGTCGTCGTCTCCACCAAGAACGAGAGTAAGAACAGTTTTCCGTGTACGCAATTCTAAATAACATTTTCCAGAGGGAAGACCAGCCAAGGCTGTCGCCACCGCCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAACCTTATGGCGATTTA</pcr_primer_p1>
		<pcr_primer_p2>GATATCGGGATAGGGTAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AGAAAACCTTATGGCGATTTACGGTAAACCGGGCGCAACTACGACACTCCGCGCGAACGTCGATACGATAGAGCGCACTTGCAGCTACATTTTAGGCCAAGCCGAAATTTTTTTATTTATTTTCTTCTCGTTTTCAAGCCGATTTTTCCGTTTTTTTCCCGATTTTAAATCGAAATTAATGAGTTCCGTAACTGTATTGATACATCGCTCAACTTTTTGTGAATTTCTACCCTATCCCGATATC</canonical_amplicon>
		<polymorphic_amplicon>AGAAAACCTTATGGCGATTTACGGTAAACCGGGCGCAACTACGACACTCCGCGCGAACGTCGATACGATAGAGCGCACTTGCAGCTACATTTTAGGCCAAGCCGAAATTTTTTTATTTATTTTCTTCTCGTTTTCAAGCCGATTTTTCYGTTTTTTTCCCGATTTTAAATCGAAATTAATGAGTTCCGTAACTGTATTGATACATCGCTCAACTTTTTGTGAATTTCTACCCTATCCCGATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23634</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>109449</contig_pos>
        <strand>+</strand>
        <context>CYGTTTTTTT[C/T]CCGATTTTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTTATTTATTTTCTTCTCGTTTTCAAGCCGATTTTTCCGTTTTTTT</left_flank>
        <right_flank>CCGATTTTAAATCGAAATTAATGAGTTCCGTAACTGTATTGATACATCGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACTTCAATTGGCATCAATCTCTCCACAAAGCTCCAGTCAACAGGTACTTCTTCAACTGTTGCGAAAGTTTTTGCTGTAATTTCAGTATTTAAATCTGAAAAACAACATAATAACTAACTTTTTTCTGGAATAGCGTGCTTCCATGGATTCTCCCATAACTTTTCAATGTTTTTCACGGAGGAAGTTGAGAAGTACGATTGAGATCTACAGGCTGTTCGAGAGACGAGACTTCGCATTGTAGAGTTCAACATTTTTTTCTGAAAATTTTTAATATGTATTTTCGAGAAAACATTAACGAATTTGAAAGGTTATCCGGATATTTTTCGAGATTAAAAAAATGAAGAAAACCTTATGGCGATTTACGGTAAACCGGGCGCAACTACGACACTCCGCGCGAACGTCGATACGATAGAGCGCACTTGCAGCTACATTTTAGGCCAAGCCGAAATTTTTTTATTTATTTTCTTCTCGTTTTCAAGCCGATTTTTCCGTTTTTTTCCCGATTTTAAATCGAAATTAATGAGTTCCGTAACTGTATTGATACATCGCTCAACTTTTTGTGAATTTCTACCCTATCCCGATATCAATACGTTCTGAAATCATGTGAATTAGGTCGAGGAGTGGGAAATTTCATTTTCGAGCGATTATCTTGTAAATTGACCTTGTTTCTGTGTTTCGCTTATTTCACTTATTCATTTTTCAGGTAAAATGTCCGACGCACTCGTGTGGCAAGTCATCCGCAACAACAGCGCTTTCATCAGAACTCAGCGCGGAATCGGAAAGAGATTCTCCACTGAGAAGTTCAACCTCAAGAAGGTTAACAGCCCAAAGTACAGTGGACTCGCCAACAAGCACGCTATTGATGTCAGCGCCGCCCCAAAGGGAGTCGTCGTCTCCACCAAGAACGAGAGTAAGAACAGTTTTCCGTGTACGCAATTCTAAATAACATTTTCCAGAGGGAAGACCAGCCAAGGCTGTCGCCACCGCCACCTTGAGCAA</canonical>
            <polymorphic>CACTTCAATTGGCATCAATCTCTCCACAAAGCTCCAGTCAACAGGTACTTCTTCAACTGTTGCGAAAGTTTTTGCTGTAATTTCAGTATTTAAATCTGAAAAACAACATAATAACTAACTTTTTTCTGGAATAGCGTGCTTCCATGGATTCTCCCATAACTTTTCAATGTTTTTCACGGAGGAAGTTGAGAAGTACGATTGAGATCTACAGGCTGTTCGAGAGACGAGACTTCGCATTGTAGAGTTCAACATTTTTTTCTGAAAATTTTTAATATGTATTTTCGAGAAAACATTAACGAATTTGAAAGGTTATCCGGATATTTTTCGAGATTAAAAAAATGAAGAAAACCTTATGGCGATTTACGGTAAACCGGGCGCAACTACGACACTCCGCGCGAACGTCGATACGATAGAGCGCACTTGCAGCTACATTTTAGGCCAAGCCGAAATTTTTTTATTTATTTTCTTCTCGTTTTCAAGCCGATTTTTCCGTTTTTTTYCCGATTTTAAATCGAAATTAATGAGTTCCGTAACTGTATTGATACATCGCTCAACTTTTTGTGAATTTCTACCCTATCCCGATATCAATACGTTCTGAAATCATGTGAATTAGGTCGAGGAGTGGGAAATTTCATTTTCGAGCGATTATCTTGTAAATTGACCTTGTTTCTGTGTTTCGCTTATTTCACTTATTCATTTTTCAGGTAAAATGTCCGACGCACTCGTGTGGCAAGTCATCCGCAACAACAGCGCTTTCATCAGAACTCAGCGCGGAATCGGAAAGAGATTCTCCACTGAGAAGTTCAACCTCAAGAAGGTTAACAGCCCAAAGTACAGTGGACTCGCCAACAAGCACGCTATTGATGTCAGCGCCGCCCCAAAGGGAGTCGTCGTCTCCACCAAGAACGAGAGTAAGAACAGTTTTCCGTGTACGCAATTCTAAATAACATTTTCCAGAGGGAAGACCAGCCAAGGCTGTCGCCACCGCCACCTTGAGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>233 174 143 126 92 78 65 46 31 12</canonical_bands>
                <polymorphic_bands>252 233 143 126 92 65 46 31 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAAACCTTATGGCGATTTA</pcr_primer_p1>
		<pcr_primer_p2>GATATCGGGATAGGGTAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AGAAAACCTTATGGCGATTTACGGTAAACCGGGCGCAACTACGACACTCCGCGCGAACGTCGATACGATAGAGCGCACTTGCAGCTACATTTTAGGCCAAGCCGAAATTTTTTTATTTATTTTCTTCTCGTTTTCAAGCCGATTTTTCCGTTTTTTTCCCGATTTTAAATCGAAATTAATGAGTTCCGTAACTGTATTGATACATCGCTCAACTTTTTGTGAATTTCTACCCTATCCCGATATC</canonical_amplicon>
		<polymorphic_amplicon>AGAAAACCTTATGGCGATTTACGGTAAACCGGGCGCAACTACGACACTCCGCGCGAACGTCGATACGATAGAGCGCACTTGCAGCTACATTTTAGGCCAAGCCGAAATTTTTTTATTTATTTTCTTCTCGTTTTCAAGCCGATTTTTCCGTTTTTTTYCCGATTTTAAATCGAAATTAATGAGTTCCGTAACTGTATTGATACATCGCTCAACTTTTTGTGAATTTCTACCCTATCCCGATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23635</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>109479</contig_pos>
        <strand>+</strand>
        <context>AATGAGTTCC[C/G]TAACTGTATT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCCGATTTTTCCGTTTTTTTCCCGATTTTAAATCGAAATTAATGAGTTCC</left_flank>
        <right_flank>TAACTGTATTGATACATCGCTCAACTTTTTGTGAATTTCTACCCTATCCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTCCAGTCAACAGGTACTTCTTCAACTGTTGCGAAAGTTTTTGCTGTAATTTCAGTATTTAAATCTGAAAAACAACATAATAACTAACTTTTTTCTGGAATAGCGTGCTTCCATGGATTCTCCCATAACTTTTCAATGTTTTTCACGGAGGAAGTTGAGAAGTACGATTGAGATCTACAGGCTGTTCGAGAGACGAGACTTCGCATTGTAGAGTTCAACATTTTTTTCTGAAAATTTTTAATATGTATTTTCGAGAAAACATTAACGAATTTGAAAGGTTATCCGGATATTTTTCGAGATTAAAAAAATGAAGAAAACCTTATGGCGATTTACGGTAAACCGGGCGCAACTACGACACTCCGCGCGAACGTCGATACGATAGAGCGCACTTGCAGCTACATTTTAGGCCAAGCCGAAATTTTTTTATTTATTTTCTTCTCGTTTTCAAGCCGATTTTTCCGTTTTTTTCCCGATTTTAAATCGAAATTAATGAGTTCCGTAACTGTATTGATACATCGCTCAACTTTTTGTGAATTTCTACCCTATCCCGATATCAATACGTTCTGAAATCATGTGAATTAGGTCGAGGAGTGGGAAATTTCATTTTCGAGCGATTATCTTGTAAATTGACCTTGTTTCTGTGTTTCGCTTATTTCACTTATTCATTTTTCAGGTAAAATGTCCGACGCACTCGTGTGGCAAGTCATCCGCAACAACAGCGCTTTCATCAGAACTCAGCGCGGAATCGGAAAGAGATTCTCCACTGAGAAGTTCAACCTCAAGAAGGTTAACAGCCCAAAGTACAGTGGACTCGCCAACAAGCACGCTATTGATGTCAGCGCCGCCCCAAAGGGAGTCGTCGTCTCCACCAAGAACGAGAGTAAGAACAGTTTTCCGTGTACGCAATTCTAAATAACATTTTCCAGAGGGAAGACCAGCCAAGGCTGTCGCCACCGCCACCTTGAGCAAGACCCCAGTCGCCTCTGTCCGCTCTTTGGC</canonical>
            <polymorphic>GCTCCAGTCAACAGGTACTTCTTCAACTGTTGCGAAAGTTTTTGCTGTAATTTCAGTATTTAAATCTGAAAAACAACATAATAACTAACTTTTTTCTGGAATAGCGTGCTTCCATGGATTCTCCCATAACTTTTCAATGTTTTTCACGGAGGAAGTTGAGAAGTACGATTGAGATCTACAGGCTGTTCGAGAGACGAGACTTCGCATTGTAGAGTTCAACATTTTTTTCTGAAAATTTTTAATATGTATTTTCGAGAAAACATTAACGAATTTGAAAGGTTATCCGGATATTTTTCGAGATTAAAAAAATGAAGAAAACCTTATGGCGATTTACGGTAAACCGGGCGCAACTACGACACTCCGCGCGAACGTCGATACGATAGAGCGCACTTGCAGCTACATTTTAGGCCAAGCCGAAATTTTTTTATTTATTTTCTTCTCGTTTTCAAGCCGATTTTTCCGTTTTTTTCCCGATTTTAAATCGAAATTAATGAGTTCCSTAACTGTATTGATACATCGCTCAACTTTTTGTGAATTTCTACCCTATCCCGATATCAATACGTTCTGAAATCATGTGAATTAGGTCGAGGAGTGGGAAATTTCATTTTCGAGCGATTATCTTGTAAATTGACCTTGTTTCTGTGTTTCGCTTATTTCACTTATTCATTTTTCAGGTAAAATGTCCGACGCACTCGTGTGGCAAGTCATCCGCAACAACAGCGCTTTCATCAGAACTCAGCGCGGAATCGGAAAGAGATTCTCCACTGAGAAGTTCAACCTCAAGAAGGTTAACAGCCCAAAGTACAGTGGACTCGCCAACAAGCACGCTATTGATGTCAGCGCCGCCCCAAAGGGAGTCGTCGTCTCCACCAAGAACGAGAGTAAGAACAGTTTTCCGTGTACGCAATTCTAAATAACATTTTCCAGAGGGAAGACCAGCCAAGGCTGTCGCCACCGCCACCTTGAGCAAGACCCCAGTCGCCTCTGTCCGCTCTTTGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTATTTTCTTCTCGTTTTCAAG</pcr_primer_p1>
		<pcr_primer_p2>TAAGTGAAATAAGCGAAACACA</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>TTTATTTTCTTCTCGTTTTCAAGCCGATTTTTCCGTTTTTTTCCCGATTTTAAATCGAAATTAATGAGTTCCGTAACTGTATTGATACATCGCTCAACTTTTTGTGAATTTCTACCCTATCCCGATATCAATACGTTCTGAAATCATGTGAATTAGGTCGAGGAGTGGGAAATTTCATTTTCGAGCGATTATCTTGTAAATTGACCTTGTTTCTGTGTTTCGCTTATTTCACTTA</canonical_amplicon>
		<polymorphic_amplicon>TTTATTTTCTTCTCGTTTTCAAGCCGATTTTTCCGTTTTTTTCCCGATTTTAAATCGAAATTAATGAGTTCCSTAACTGTATTGATACATCGCTCAACTTTTTGTGAATTTCTACCCTATCCCGATATCAATACGTTCTGAAATCATGTGAATTAGGTCGAGGAGTGGGAAATTTCATTTTCGAGCGATTATCTTGTAAATTGACCTTGTTTCTGTGTTTCGCTTATTTCACTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23636</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>109498</contig_pos>
        <strand>+</strand>
        <context>TTGATACATC[A/G]CTCAACTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCCGATTTTAAATCGAAATTAATGAGTTCCGTAACTGTATTGATACATC</left_flank>
        <right_flank>CTCAACTTTTTGTGAATTTCTACCCTATCCCGATATCAATACGTTCTGAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCAACTGTTGCGAAAGTTTTTGCTGTAATTTCAGTATTTAAATCTGAAAAACAACATAATAACTAACTTTTTTCTGGAATAGCGTGCTTCCATGGATTCTCCCATAACTTTTCAATGTTTTTCACGGAGGAAGTTGAGAAGTACGATTGAGATCTACAGGCTGTTCGAGAGACGAGACTTCGCATTGTAGAGTTCAACATTTTTTTCTGAAAATTTTTAATATGTATTTTCGAGAAAACATTAACGAATTTGAAAGGTTATCCGGATATTTTTCGAGATTAAAAAAATGAAGAAAACCTTATGGCGATTTACGGTAAACCGGGCGCAACTACGACACTCCGCGCGAACGTCGATACGATAGAGCGCACTTGCAGCTACATTTTAGGCCAAGCCGAAATTTTTTTATTTATTTTCTTCTCGTTTTCAAGCCGATTTTTCCGTTTTTTTCCCGATTTTAAATCGAAATTAATGAGTTCCGTAACTGTATTGATACATCGCTCAACTTTTTGTGAATTTCTACCCTATCCCGATATCAATACGTTCTGAAATCATGTGAATTAGGTCGAGGAGTGGGAAATTTCATTTTCGAGCGATTATCTTGTAAATTGACCTTGTTTCTGTGTTTCGCTTATTTCACTTATTCATTTTTCAGGTAAAATGTCCGACGCACTCGTGTGGCAAGTCATCCGCAACAACAGCGCTTTCATCAGAACTCAGCGCGGAATCGGAAAGAGATTCTCCACTGAGAAGTTCAACCTCAAGAAGGTTAACAGCCCAAAGTACAGTGGACTCGCCAACAAGCACGCTATTGATGTCAGCGCCGCCCCAAAGGGAGTCGTCGTCTCCACCAAGAACGAGAGTAAGAACAGTTTTCCGTGTACGCAATTCTAAATAACATTTTCCAGAGGGAAGACCAGCCAAGGCTGTCGCCACCGCCACCTTGAGCAAGACCCCAGTCGCCTCTGTCCGCTCTTTGGCTAAGAACACCGGATTCAGC</canonical>
            <polymorphic>TCTTCAACTGTTGCGAAAGTTTTTGCTGTAATTTCAGTATTTAAATCTGAAAAACAACATAATAACTAACTTTTTTCTGGAATAGCGTGCTTCCATGGATTCTCCCATAACTTTTCAATGTTTTTCACGGAGGAAGTTGAGAAGTACGATTGAGATCTACAGGCTGTTCGAGAGACGAGACTTCGCATTGTAGAGTTCAACATTTTTTTCTGAAAATTTTTAATATGTATTTTCGAGAAAACATTAACGAATTTGAAAGGTTATCCGGATATTTTTCGAGATTAAAAAAATGAAGAAAACCTTATGGCGATTTACGGTAAACCGGGCGCAACTACGACACTCCGCGCGAACGTCGATACGATAGAGCGCACTTGCAGCTACATTTTAGGCCAAGCCGAAATTTTTTTATTTATTTTCTTCTCGTTTTCAAGCCGATTTTTCCGTTTTTTTCCCGATTTTAAATCGAAATTAATGAGTTCCGTAACTGTATTGATACATCRCTCAACTTTTTGTGAATTTCTACCCTATCCCGATATCAATACGTTCTGAAATCATGTGAATTAGGTCGAGGAGTGGGAAATTTCATTTTCGAGCGATTATCTTGTAAATTGACCTTGTTTCTGTGTTTCGCTTATTTCACTTATTCATTTTTCAGGTAAAATGTCCGACGCACTCGTGTGGCAAGTCATCCGCAACAACAGCGCTTTCATCAGAACTCAGCGCGGAATCGGAAAGAGATTCTCCACTGAGAAGTTCAACCTCAAGAAGGTTAACAGCCCAAAGTACAGTGGACTCGCCAACAAGCACGCTATTGATGTCAGCGCCGCCCCAAAGGGAGTCGTCGTCTCCACCAAGAACGAGAGTAAGAACAGTTTTCCGTGTACGCAATTCTAAATAACATTTTCCAGAGGGAAGACCAGCCAAGGCTGTCGCCACCGCCACCTTGAGCAAGACCCCAGTCGCCTCTGTCCGCTCTTTGGCTAAGAACACCGGATTCAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTATTTTCTTCTCGTTTTCAAG</pcr_primer_p1>
		<pcr_primer_p2>TAAGTGAAATAAGCGAAACACA</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>TTTATTTTCTTCTCGTTTTCAAGCCGATTTTTCCGTTTTTTTCCCGATTTTAAATCGAAATTAATGAGTTCCGTAACTGTATTGATACATCGCTCAACTTTTTGTGAATTTCTACCCTATCCCGATATCAATACGTTCTGAAATCATGTGAATTAGGTCGAGGAGTGGGAAATTTCATTTTCGAGCGATTATCTTGTAAATTGACCTTGTTTCTGTGTTTCGCTTATTTCACTTA</canonical_amplicon>
		<polymorphic_amplicon>TTTATTTTCTTCTCGTTTTCAAGCCGATTTTTCCGTTTTTTTCCCGATTTTAAATCGAAATTAATGAGTTCCGTAACTGTATTGATACATCRCTCAACTTTTTGTGAATTTCTACCCTATCCCGATATCAATACGTTCTGAAATCATGTGAATTAGGTCGAGGAGTGGGAAATTTCATTTTCGAGCGATTATCTTGTAAATTGACCTTGTTTCTGTGTTTCGCTTATTTCACTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23637</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>109559</contig_pos>
        <strand>+</strand>
        <context>ATCATGTGAA[A/T]TAGGTCGAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTGAATTTCTACCCTATCCCGATATCAATACGTTCTGAAATCATGTGAA</left_flank>
        <right_flank>TAGGTCGAGGAGTGGGAAATTTCATTTTCGAGCGATTATCTTGTAAATTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAACTAACTTTTTTCTGGAATAGCGTGCTTCCATGGATTCTCCCATAACTTTTCAATGTTTTTCACGGAGGAAGTTGAGAAGTACGATTGAGATCTACAGGCTGTTCGAGAGACGAGACTTCGCATTGTAGAGTTCAACATTTTTTTCTGAAAATTTTTAATATGTATTTTCGAGAAAACATTAACGAATTTGAAAGGTTATCCGGATATTTTTCGAGATTAAAAAAATGAAGAAAACCTTATGGCGATTTACGGTAAACCGGGCGCAACTACGACACTCCGCGCGAACGTCGATACGATAGAGCGCACTTGCAGCTACATTTTAGGCCAAGCCGAAATTTTTTTATTTATTTTCTTCTCGTTTTCAAGCCGATTTTTCCGTTTTTTTCCCGATTTTAAATCGAAATTAATGAGTTCCGTAACTGTATTGATACATCGCTCAACTTTTTGTGAATTTCTACCCTATCCCGATATCAATACGTTCTGAAATCATGTGAATTAGGTCGAGGAGTGGGAAATTTCATTTTCGAGCGATTATCTTGTAAATTGACCTTGTTTCTGTGTTTCGCTTATTTCACTTATTCATTTTTCAGGTAAAATGTCCGACGCACTCGTGTGGCAAGTCATCCGCAACAACAGCGCTTTCATCAGAACTCAGCGCGGAATCGGAAAGAGATTCTCCACTGAGAAGTTCAACCTCAAGAAGGTTAACAGCCCAAAGTACAGTGGACTCGCCAACAAGCACGCTATTGATGTCAGCGCCGCCCCAAAGGGAGTCGTCGTCTCCACCAAGAACGAGAGTAAGAACAGTTTTCCGTGTACGCAATTCTAAATAACATTTTCCAGAGGGAAGACCAGCCAAGGCTGTCGCCACCGCCACCTTGAGCAAGACCCCAGTCGCCTCTGTCCGCTCTTTGGCTAAGAACACCGGATTCAGCAAGTTCCAGAAGCTCGCTCAACGTCGCGCTGCCGCCTACGTCCGCTCCCAGGTCAAGAAGA</canonical>
            <polymorphic>ATAACTAACTTTTTTCTGGAATAGCGTGCTTCCATGGATTCTCCCATAACTTTTCAATGTTTTTCACGGAGGAAGTTGAGAAGTACGATTGAGATCTACAGGCTGTTCGAGAGACGAGACTTCGCATTGTAGAGTTCAACATTTTTTTCTGAAAATTTTTAATATGTATTTTCGAGAAAACATTAACGAATTTGAAAGGTTATCCGGATATTTTTCGAGATTAAAAAAATGAAGAAAACCTTATGGCGATTTACGGTAAACCGGGCGCAACTACGACACTCCGCGCGAACGTCGATACGATAGAGCGCACTTGCAGCTACATTTTAGGCCAAGCCGAAATTTTTTTATTTATTTTCTTCTCGTTTTCAAGCCGATTTTTCCGTTTTTTTCCCGATTTTAAATCGAAATTAATGAGTTCCGTAACTGTATTGATACATCGCTCAACTTTTTGTGAATTTCTACCCTATCCCGATATCAATACGTTCTGAAATCATGTGAAWTAGGTCGAGGAGTGGGAAATTTCATTTTCGAGCGATTATCTTGTAAATTGACCTTGTTTCTGTGTTTCGCTTATTTCACTTATTCATTTTTCAGGTAAAATGTCCGACGCACTCGTGTGGCAAGTCATCCGCAACAACAGCGCTTTCATCAGAACTCAGCGCGGAATCGGAAAGAGATTCTCCACTGAGAAGTTCAACCTCAAGAAGGTTAACAGCCCAAAGTACAGTGGACTCGCCAACAAGCACGCTATTGATGTCAGCGCCGCCCCAAAGGGAGTCGTCGTCTCCACCAAGAACGAGAGTAAGAACAGTTTTCCGTGTACGCAATTCTAAATAACATTTTCCAGAGGGAAGACCAGCCAAGGCTGTCGCCACCGCCACCTTGAGCAAGACCCCAGTCGCCTCTGTCCGCTCTTTGGCTAAGAACACCGGATTCAGCAAGTTCCAGAAGCTCGCTCAACGTCGCGCTGCCGCCTACGTCCGCTCCCAGGTCAAGAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>280 175 153 149 68 48 44 35 28 20</canonical_bands>
                <polymorphic_bands>280 175 153 149 68 64 48 35 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTGAATTTCTACCCTATC</pcr_primer_p1>
		<pcr_primer_p2>AACTTCTCAGTGGAGAATCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTGAATTTCTACCCTATCCCGATATCAATACGTTCTGAAATCATGTGAATTAGGTCGAGGAGTGGGAAATTTCATTTTCGAGCGATTATCTTGTAAATTGACCTTGTTTCTGTGTTTCGCTTATTTCACTTATTCATTTTTCAGGTAAAATGTCCGACGCACTCGTGTGGCAAGTCATCCGCAACAACAGCGCTTTCATCAGAACTCAGCGCGGAATCGGAAAGAGATTCTCCACTGAGAAGTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTGAATTTCTACCCTATCCCGATATCAATACGTTCTGAAATCATGTGAAWTAGGTCGAGGAGTGGGAAATTTCATTTTCGAGCGATTATCTTGTAAATTGACCTTGTTTCTGTGTTTCGCTTATTTCACTTATTCATTTTTCAGGTAAAATGTCCGACGCACTCGTGTGGCAAGTCATCCGCAACAACAGCGCTTTCATCAGAACTCAGCGCGGAATCGGAAAGAGATTCTCCACTGAGAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23638</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>109642</contig_pos>
        <strand>+</strand>
        <context>ATTTCACTTA[C/T]TCATTTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGATTATCTTGTAAATTGACCTTGTTTCTGTGTTTCGCTTATTTCACTTA</left_flank>
        <right_flank>TCATTTTTCAGGTAAAATGTCCGACGCACTCGTGTGGCAAGTCATCCGCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACGATTGAGATCTACAGGCTGTTCGAGAGACGAGACTTCGCATTGTAGAGTTCAACATTTTTTTCTGAAAATTTTTAATATGTATTTTCGAGAAAACATTAACGAATTTGAAAGGTTATCCGGATATTTTTCGAGATTAAAAAAATGAAGAAAACCTTATGGCGATTTACGGTAAACCGGGCGCAACTACGACACTCCGCGCGAACGTCGATACGATAGAGCGCACTTGCAGCTACATTTTAGGCCAAGCCGAAATTTTTTTATTTATTTTCTTCTCGTTTTCAAGCCGATTTTTCCGTTTTTTTCCCGATTTTAAATCGAAATTAATGAGTTCCGTAACTGTATTGATACATCGCTCAACTTTTTGTGAATTTCTACCCTATCCCGATATCAATACGTTCTGAAATCATGTGAATTAGGTCGAGGAGTGGGAAATTTCATTTTCGAGCGATTATCTTGTAAATTGACCTTGTTTCTGTGTTTCGCTTATTTCACTTATTCATTTTTCAGGTAAAATGTCCGACGCACTCGTGTGGCAAGTCATCCGCAACAACAGCGCTTTCATCAGAACTCAGCGCGGAATCGGAAAGAGATTCTCCACTGAGAAGTTCAACCTCAAGAAGGTTAACAGCCCAAAGTACAGTGGACTCGCCAACAAGCACGCTATTGATGTCAGCGCCGCCCCAAAGGGAGTCGTCGTCTCCACCAAGAACGAGAGTAAGAACAGTTTTCCGTGTACGCAATTCTAAATAACATTTTCCAGAGGGAAGACCAGCCAAGGCTGTCGCCACCGCCACCTTGAGCAAGACCCCAGTCGCCTCTGTCCGCTCTTTGGCTAAGAACACCGGATTCAGCAAGTTCCAGAAGCTCGCTCAACGTCGCGCTGCCGCCTACGTCCGCTCCCAGGTCAAGAAGACCAAGGTGCCAAAGACCGATGCTTAAATCGTGTTTGTTCCACCATTGTTATAAATAAAAGCGTTATTGCTTGAAGATAGTGTT</canonical>
            <polymorphic>TACGATTGAGATCTACAGGCTGTTCGAGAGACGAGACTTCGCATTGTAGAGTTCAACATTTTTTTCTGAAAATTTTTAATATGTATTTTCGAGAAAACATTAACGAATTTGAAAGGTTATCCGGATATTTTTCGAGATTAAAAAAATGAAGAAAACCTTATGGCGATTTACGGTAAACCGGGCGCAACTACGACACTCCGCGCGAACGTCGATACGATAGAGCGCACTTGCAGCTACATTTTAGGCCAAGCCGAAATTTTTTTATTTATTTTCTTCTCGTTTTCAAGCCGATTTTTCCGTTTTTTTCCCGATTTTAAATCGAAATTAATGAGTTCCGTAACTGTATTGATACATCGCTCAACTTTTTGTGAATTTCTACCCTATCCCGATATCAATACGTTCTGAAATCATGTGAATTAGGTCGAGGAGTGGGAAATTTCATTTTCGAGCGATTATCTTGTAAATTGACCTTGTTTCTGTGTTTCGCTTATTTCACTTAYTCATTTTTCAGGTAAAATGTCCGACGCACTCGTGTGGCAAGTCATCCGCAACAACAGCGCTTTCATCAGAACTCAGCGCGGAATCGGAAAGAGATTCTCCACTGAGAAGTTCAACCTCAAGAAGGTTAACAGCCCAAAGTACAGTGGACTCGCCAACAAGCACGCTATTGATGTCAGCGCCGCCCCAAAGGGAGTCGTCGTCTCCACCAAGAACGAGAGTAAGAACAGTTTTCCGTGTACGCAATTCTAAATAACATTTTCCAGAGGGAAGACCAGCCAAGGCTGTCGCCACCGCCACCTTGAGCAAGACCCCAGTCGCCTCTGTCCGCTCTTTGGCTAAGAACACCGGATTCAGCAAGTTCCAGAAGCTCGCTCAACGTCGCGCTGCCGCCTACGTCCGCTCCCAGGTCAAGAAGACCAAGGTGCCAAAGACCGATGCTTAAATCGTGTTTGTTCCACCATTGTTATAAATAAAAGCGTTATTGCTTGAAGATAGTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTGAATTTCTACCCTATC</pcr_primer_p1>
		<pcr_primer_p2>AACTTCTCAGTGGAGAATCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTGAATTTCTACCCTATCCCGATATCAATACGTTCTGAAATCATGTGAATTAGGTCGAGGAGTGGGAAATTTCATTTTCGAGCGATTATCTTGTAAATTGACCTTGTTTCTGTGTTTCGCTTATTTCACTTATTCATTTTTCAGGTAAAATGTCCGACGCACTCGTGTGGCAAGTCATCCGCAACAACAGCGCTTTCATCAGAACTCAGCGCGGAATCGGAAAGAGATTCTCCACTGAGAAGTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTGAATTTCTACCCTATCCCGATATCAATACGTTCTGAAATCATGTGAATTAGGTCGAGGAGTGGGAAATTTCATTTTCGAGCGATTATCTTGTAAATTGACCTTGTTTCTGTGTTTCGCTTATTTCACTTAYTCATTTTTCAGGTAAAATGTCCGACGCACTCGTGTGGCAAGTCATCCGCAACAACAGCGCTTTCATCAGAACTCAGCGCGGAATCGGAAAGAGATTCTCCACTGAGAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23639</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>117496</contig_pos>
        <strand>+</strand>
        <context>AGTAGTCTAT[C/T]GTTTAAGACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGTATTTTTTCATATTTCCTTTATTGTTTTTCATCTAGAGTAGTCTAT</left_flank>
        <right_flank>GTTTAAGACTGTTTTGCGTTTCTGTGTAATCAATAAAATTGTTTTTGAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACAGAGTATACTGGCACAAGCGGATCCTCGATGACGCAAAATTTTGTTCTAAGTTTTTTTTGTGATGATTTGTTTTAATTTTTTTCGATAACCCATACTCTTTCTTCATCGTACCCAAAGCGTTTACGAAGGAAAACGAAAATAAGACTGGTGAGGGCTCTTTCTTGTTTCTATCGAAGATTATTTTATCTGTTCAGGACTGGTGCGAGAAAAAAGGAGAAAGACAACGATGGTGAAAAACCGAATCGAAAGACTCCAGAGAAAGATCAACAAATCCTGAAGAGAAAAATTGAGAATGTAAGTGTCATGAAACTTTTTCCCCCTTATAATCTCCATTTTTCAGCGAGCTCAGCGAAAAACCGGACAGGATGCTGCTAGACTTTTCCAAACGACAGATCATTTCTCCACTTCCAAGTCTAGCTCCATTTCTTAATTTTTACTGATTGTTTTGTATTTTTTCATATTTCCTTTATTGTTTTTCATCTAGAGTAGTCTATCGTTTAAGACTGTTTTGCGTTTCTGTGTAATCAATAAAATTGTTTTTGAAAAGCCTGTGTCGTTGGTAAATCGGGGGTAAAATGGGGCTGATGTGGGGCCTATATGGGGATTTCCACCGCGCGCCGCCGACTGCCCAAACGGGAGTTACCTGAGAAGATCTCAAAATTAATTGGGCGGGTGTTTTGTCCATGTTCTCTTTTCACTGACTACAAGACATCTTCTAGTTTTCAATTTACTCAGAACAGGTGAATTCTAAAAATATTACGAACATGTATTGATTTTTGGGTCTTTCTCCAGAAGATCATATGCTAATCTGAAGTAACTCTATCGTATCAGACTAGTGGTTATTGTATAACATGTAATAAAAGGACCCCACACTGTCAAGTTTGAGCTCATTTTTCTTGGCTCGGACATCAAAAATCTGTCAAATGATAAAATTTTTGTGATATGATGAGTAAATATTTATCAGTTGACAACTTTTTAATATACAGGAAATGATA</canonical>
            <polymorphic>CAACAGAGTATACTGGCACAAGCGGATCCTCGATGACGCAAAATTTTGTTCTAAGTTTTTTTTGTGATGATTTGTTTTAATTTTTTTCGATAACCCATACTCTTTCTTCATCGTACCCAAAGCGTTTACGAAGGAAAACGAAAATAAGACTGGTGAGGGCTCTTTCTTGTTTCTATCGAAGATTATTTTATCTGTTCAGGACTGGTGCGAGAAAAAAGGAGAAAGACAACGATGGTGAAAAACCGAATCGAAAGACTCCAGAGAAAGATCAACAAATCCTGAAGAGAAAAATTGAGAATGTAAGTGTCATGAAACTTTTTCCCCCTTATAATCTCCATTTTTCAGCGAGCTCAGCGAAAAACCGGACAGGATGCTGCTAGACTTTTCCAAACGACAGATCATTTCTCCACTTCCAAGTCTAGCTCCATTTCTTAATTTTTACTGATTGTTTTGTATTTTTTCATATTTCCTTTATTGTTTTTCATCTAGAGTAGTCTATYGTTTAAGACTGTTTTGCGTTTCTGTGTAATCAATAAAATTGTTTTTGAAAAGCCTGTGTCGTTGGTAAATCGGGGGTAAAATGGGGCTGATGTGGGGCCTATATGGGGATTTCCACCGCGCGCCGCCGACTGCCCAAACGGGAGTTACCTGAGAAGATCTCAAAATTAATTGGGCGGGTGTTTTGTCCATGTTCTCTTTTCACTGACTACAAGACATCTTCTAGTTTTCAATTTACTCAGAACAGGTGAATTCTAAAAATATTACGAACATGTATTGATTTTTGGGTCTTTCTCCAGAAGATCATATGCTAATCTGAAGTAACTCTATCGTATCAGACTAGTGGTTATTGTATAACATGTAATAAAAGGACCCCACACTGTCAAGTTTGAGCTCATTTTTCTTGGCTCGGACATCAAAAATCTGTCAAATGATAAAATTTTTGTGATATGATGAGTAAATATTTATCAGTTGACAACTTTTTAATATACAGGAAATGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTTTTTCCCCCTTATAATCT</pcr_primer_p1>
		<pcr_primer_p2>AGGCTTTTCAAAAACAATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAACTTTTTCCCCCTTATAATCTCCATTTTTCAGCGAGCTCAGCGAAAAACCGGACAGGATGCTGCTAGACTTTTCCAAACGACAGATCATTTCTCCACTTCCAAGTCTAGCTCCATTTCTTAATTTTTACTGATTGTTTTGTATTTTTTCATATTTCCTTTATTGTTTTTCATCTAGAGTAGTCTATCGTTTAAGACTGTTTTGCGTTTCTGTGTAATCAATAAAATTGTTTTTGAAAAGCCT</canonical_amplicon>
		<polymorphic_amplicon>AAACTTTTTCCCCCTTATAATCTCCATTTTTCAGCGAGCTCAGCGAAAAACCGGACAGGATGCTGCTAGACTTTTCCAAACGACAGATCATTTCTCCACTTCCAAGTCTAGCTCCATTTCTTAATTTTTACTGATTGTTTTGTATTTTTTCATATTTCCTTTATTGTTTTTCATCTAGAGTAGTCTATYGTTTAAGACTGTTTTGCGTTTCTGTGTAATCAATAAAATTGTTTTTGAAAAGCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23640</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>117513</contig_pos>
        <strand>+</strand>
        <context>GACTGTTTTG[A/C]GTTTCTGTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCCTTTATTGTTTTTCATCTAGAGTAGTCTATCGTTTAAGACTGTTTTG</left_flank>
        <right_flank>GTTTCTGTGTAATCAATAAAATTGTTTTTGAAAAGCCTGTGTCGTTGGTA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAGCGGATCCTCGATGACGCAAAATTTTGTTCTAAGTTTTTTTTGTGATGATTTGTTTTAATTTTTTTCGATAACCCATACTCTTTCTTCATCGTACCCAAAGCGTTTACGAAGGAAAACGAAAATAAGACTGGTGAGGGCTCTTTCTTGTTTCTATCGAAGATTATTTTATCTGTTCAGGACTGGTGCGAGAAAAAAGGAGAAAGACAACGATGGTGAAAAACCGAATCGAAAGACTCCAGAGAAAGATCAACAAATCCTGAAGAGAAAAATTGAGAATGTAAGTGTCATGAAACTTTTTCCCCCTTATAATCTCCATTTTTCAGCGAGCTCAGCGAAAAACCGGACAGGATGCTGCTAGACTTTTCCAAACGACAGATCATTTCTCCACTTCCAAGTCTAGCTCCATTTCTTAATTTTTACTGATTGTTTTGTATTTTTTCATATTTCCTTTATTGTTTTTCATCTAGAGTAGTCTATCGTTTAAGACTGTTTTGCGTTTCTGTGTAATCAATAAAATTGTTTTTGAAAAGCCTGTGTCGTTGGTAAATCGGGGGTAAAATGGGGCTGATGTGGGGCCTATATGGGGATTTCCACCGCGCGCCGCCGACTGCCCAAACGGGAGTTACCTGAGAAGATCTCAAAATTAATTGGGCGGGTGTTTTGTCCATGTTCTCTTTTCACTGACTACAAGACATCTTCTAGTTTTCAATTTACTCAGAACAGGTGAATTCTAAAAATATTACGAACATGTATTGATTTTTGGGTCTTTCTCCAGAAGATCATATGCTAATCTGAAGTAACTCTATCGTATCAGACTAGTGGTTATTGTATAACATGTAATAAAAGGACCCCACACTGTCAAGTTTGAGCTCATTTTTCTTGGCTCGGACATCAAAAATCTGTCAAATGATAAAATTTTTGTGATATGATGAGTAAATATTTATCAGTTGACAACTTTTTAATATACAGGAAATGATATGTAATCTTTAAGTTGA</canonical>
            <polymorphic>ACAAGCGGATCCTCGATGACGCAAAATTTTGTTCTAAGTTTTTTTTGTGATGATTTGTTTTAATTTTTTTCGATAACCCATACTCTTTCTTCATCGTACCCAAAGCGTTTACGAAGGAAAACGAAAATAAGACTGGTGAGGGCTCTTTCTTGTTTCTATCGAAGATTATTTTATCTGTTCAGGACTGGTGCGAGAAAAAAGGAGAAAGACAACGATGGTGAAAAACCGAATCGAAAGACTCCAGAGAAAGATCAACAAATCCTGAAGAGAAAAATTGAGAATGTAAGTGTCATGAAACTTTTTCCCCCTTATAATCTCCATTTTTCAGCGAGCTCAGCGAAAAACCGGACAGGATGCTGCTAGACTTTTCCAAACGACAGATCATTTCTCCACTTCCAAGTCTAGCTCCATTTCTTAATTTTTACTGATTGTTTTGTATTTTTTCATATTTCCTTTATTGTTTTTCATCTAGAGTAGTCTATCGTTTAAGACTGTTTTGMGTTTCTGTGTAATCAATAAAATTGTTTTTGAAAAGCCTGTGTCGTTGGTAAATCGGGGGTAAAATGGGGCTGATGTGGGGCCTATATGGGGATTTCCACCGCGCGCCGCCGACTGCCCAAACGGGAGTTACCTGAGAAGATCTCAAAATTAATTGGGCGGGTGTTTTGTCCATGTTCTCTTTTCACTGACTACAAGACATCTTCTAGTTTTCAATTTACTCAGAACAGGTGAATTCTAAAAATATTACGAACATGTATTGATTTTTGGGTCTTTCTCCAGAAGATCATATGCTAATCTGAAGTAACTCTATCGTATCAGACTAGTGGTTATTGTATAACATGTAATAAAAGGACCCCACACTGTCAAGTTTGAGCTCATTTTTCTTGGCTCGGACATCAAAAATCTGTCAAATGATAAAATTTTTGTGATATGATGAGTAAATATTTATCAGTTGACAACTTTTTAATATACAGGAAATGATATGTAATCTTTAAGTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATATTTCCTTTATTGTTTTTCATC</pcr_primer_p1>
		<pcr_primer_p2>ATGTCTTGTAGTCAGTGAAAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CATATTTCCTTTATTGTTTTTCATCTAGAGTAGTCTATCGTTTAAGACTGTTTTGCGTTTCTGTGTAATCAATAAAATTGTTTTTGAAAAGCCTGTGTCGTTGGTAAATCGGGGGTAAAATGGGGCTGATGTGGGGCCTATATGGGGATTTCCACCGCGCGCCGCCGACTGCCCAAACGGGAGTTACCTGAGAAGATCTCAAAATTAATTGGGCGGGTGTTTTGTCCATGTTCTCTTTTCACTGACTACAAGACAT</canonical_amplicon>
		<polymorphic_amplicon>CATATTTCCTTTATTGTTTTTCATCTAGAGTAGTCTATCGTTTAAGACTGTTTTGMGTTTCTGTGTAATCAATAAAATTGTTTTTGAAAAGCCTGTGTCGTTGGTAAATCGGGGGTAAAATGGGGCTGATGTGGGGCCTATATGGGGATTTCCACCGCGCGCCGCCGACTGCCCAAACGGGAGTTACCTGAGAAGATCTCAAAATTAATTGGGCGGGTGTTTTGTCCATGTTCTCTTTTCACTGACTACAAGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23641</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>117602</contig_pos>
        <strand>+</strand>
        <context>GGCCTATATG[A/G]GGATTTCCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGTCGTTGGTAAATCGGGGGTAAAATGGGGCTGATGTGGGGCCTATATG</left_flank>
        <right_flank>GGATTTCCACCGCGCGCCGCCGACTGCCCAAACGGGAGTTACCTGAGAAG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCATCGTACCCAAAGCGTTTACGAAGGAAAACGAAAATAAGACTGGTGAGGGCTCTTTCTTGTTTCTATCGAAGATTATTTTATCTGTTCAGGACTGGTGCGAGAAAAAAGGAGAAAGACAACGATGGTGAAAAACCGAATCGAAAGACTCCAGAGAAAGATCAACAAATCCTGAAGAGAAAAATTGAGAATGTAAGTGTCATGAAACTTTTTCCCCCTTATAATCTCCATTTTTCAGCGAGCTCAGCGAAAAACCGGACAGGATGCTGCTAGACTTTTCCAAACGACAGATCATTTCTCCACTTCCAAGTCTAGCTCCATTTCTTAATTTTTACTGATTGTTTTGTATTTTTTCATATTTCCTTTATTGTTTTTCATCTAGAGTAGTCTATCGTTTAAGACTGTTTTGCGTTTCTGTGTAATCAATAAAATTGTTTTTGAAAAGCCTGTGTCGTTGGTAAATCGGGGGTAAAATGGGGCTGATGTGGGGCCTATATGGGGATTTCCACCGCGCGCCGCCGACTGCCCAAACGGGAGTTACCTGAGAAGATCTCAAAATTAATTGGGCGGGTGTTTTGTCCATGTTCTCTTTTCACTGACTACAAGACATCTTCTAGTTTTCAATTTACTCAGAACAGGTGAATTCTAAAAATATTACGAACATGTATTGATTTTTGGGTCTTTCTCCAGAAGATCATATGCTAATCTGAAGTAACTCTATCGTATCAGACTAGTGGTTATTGTATAACATGTAATAAAAGGACCCCACACTGTCAAGTTTGAGCTCATTTTTCTTGGCTCGGACATCAAAAATCTGTCAAATGATAAAATTTTTGTGATATGATGAGTAAATATTTATCAGTTGACAACTTTTTAATATACAGGAAATGATATGTAATCTTTAAGTTGACAGTTAGAAGGCCCTTTCATTACAGGTATTACAGAAACCCACCGCAATTTCGTCATCGCTTTGCCGATCCATATTGAAGTAATTCAGGA</canonical>
            <polymorphic>TTCATCGTACCCAAAGCGTTTACGAAGGAAAACGAAAATAAGACTGGTGAGGGCTCTTTCTTGTTTCTATCGAAGATTATTTTATCTGTTCAGGACTGGTGCGAGAAAAAAGGAGAAAGACAACGATGGTGAAAAACCGAATCGAAAGACTCCAGAGAAAGATCAACAAATCCTGAAGAGAAAAATTGAGAATGTAAGTGTCATGAAACTTTTTCCCCCTTATAATCTCCATTTTTCAGCGAGCTCAGCGAAAAACCGGACAGGATGCTGCTAGACTTTTCCAAACGACAGATCATTTCTCCACTTCCAAGTCTAGCTCCATTTCTTAATTTTTACTGATTGTTTTGTATTTTTTCATATTTCCTTTATTGTTTTTCATCTAGAGTAGTCTATCGTTTAAGACTGTTTTGCGTTTCTGTGTAATCAATAAAATTGTTTTTGAAAAGCCTGTGTCGTTGGTAAATCGGGGGTAAAATGGGGCTGATGTGGGGCCTATATGRGGATTTCCACCGCGCGCCGCCGACTGCCCAAACGGGAGTTACCTGAGAAGATCTCAAAATTAATTGGGCGGGTGTTTTGTCCATGTTCTCTTTTCACTGACTACAAGACATCTTCTAGTTTTCAATTTACTCAGAACAGGTGAATTCTAAAAATATTACGAACATGTATTGATTTTTGGGTCTTTCTCCAGAAGATCATATGCTAATCTGAAGTAACTCTATCGTATCAGACTAGTGGTTATTGTATAACATGTAATAAAAGGACCCCACACTGTCAAGTTTGAGCTCATTTTTCTTGGCTCGGACATCAAAAATCTGTCAAATGATAAAATTTTTGTGATATGATGAGTAAATATTTATCAGTTGACAACTTTTTAATATACAGGAAATGATATGTAATCTTTAAGTTGACAGTTAGAAGGCCCTTTCATTACAGGTATTACAGAAACCCACCGCAATTTCGTCATCGCTTTGCCGATCCATATTGAAGTAATTCAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGTTTTTGAAAAGCCTGT</pcr_primer_p1>
		<pcr_primer_p2>CAAAAATCAATACATGTTCGTAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATTGTTTTTGAAAAGCCTGTGTCGTTGGTAAATCGGGGGTAAAATGGGGCTGATGTGGGGCCTATATGGGGATTTCCACCGCGCGCCGCCGACTGCCCAAACGGGAGTTACCTGAGAAGATCTCAAAATTAATTGGGCGGGTGTTTTGTCCATGTTCTCTTTTCACTGACTACAAGACATCTTCTAGTTTTCAATTTACTCAGAACAGGTGAATTCTAAAAATATTACGAACATGTATTGATTTTTG</canonical_amplicon>
		<polymorphic_amplicon>AATTGTTTTTGAAAAGCCTGTGTCGTTGGTAAATCGGGGGTAAAATGGGGCTGATGTGGGGCCTATATGRGGATTTCCACCGCGCGCCGCCGACTGCCCAAACGGGAGTTACCTGAGAAGATCTCAAAATTAATTGGGCGGGTGTTTTGTCCATGTTCTCTTTTCACTGACTACAAGACATCTTCTAGTTTTCAATTTACTCAGAACAGGTGAATTCTAAAAATATTACGAACATGTATTGATTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23642</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>117652</contig_pos>
        <strand>+</strand>
        <context>TACCTGAGAA[A/G]ATCTCAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGATTTCCACCGCGCGCCGCCGACTGCCCAAACGGGAGTTACCTGAGAA</left_flank>
        <right_flank>ATCTCAAAATTAATTGGGCGGGTGTTTTGTCCATGTTCTCTTTTCACTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGCTCTTTCTTGTTTCTATCGAAGATTATTTTATCTGTTCAGGACTGGTGCGAGAAAAAAGGAGAAAGACAACGATGGTGAAAAACCGAATCGAAAGACTCCAGAGAAAGATCAACAAATCCTGAAGAGAAAAATTGAGAATGTAAGTGTCATGAAACTTTTTCCCCCTTATAATCTCCATTTTTCAGCGAGCTCAGCGAAAAACCGGACAGGATGCTGCTAGACTTTTCCAAACGACAGATCATTTCTCCACTTCCAAGTCTAGCTCCATTTCTTAATTTTTACTGATTGTTTTGTATTTTTTCATATTTCCTTTATTGTTTTTCATCTAGAGTAGTCTATCGTTTAAGACTGTTTTGCGTTTCTGTGTAATCAATAAAATTGTTTTTGAAAAGCCTGTGTCGTTGGTAAATCGGGGGTAAAATGGGGCTGATGTGGGGCCTATATGGGGATTTCCACCGCGCGCCGCCGACTGCCCAAACGGGAGTTACCTGAGAAGATCTCAAAATTAATTGGGCGGGTGTTTTGTCCATGTTCTCTTTTCACTGACTACAAGACATCTTCTAGTTTTCAATTTACTCAGAACAGGTGAATTCTAAAAATATTACGAACATGTATTGATTTTTGGGTCTTTCTCCAGAAGATCATATGCTAATCTGAAGTAACTCTATCGTATCAGACTAGTGGTTATTGTATAACATGTAATAAAAGGACCCCACACTGTCAAGTTTGAGCTCATTTTTCTTGGCTCGGACATCAAAAATCTGTCAAATGATAAAATTTTTGTGATATGATGAGTAAATATTTATCAGTTGACAACTTTTTAATATACAGGAAATGATATGTAATCTTTAAGTTGACAGTTAGAAGGCCCTTTCATTACAGGTATTACAGAAACCCACCGCAATTTCGTCATCGCTTTGCCGATCCATATTGAAGTAATTCAGGAAAAATATAACGTAAATCAACATGAACATCTGAAACTATTAAATCTTCCAT</canonical>
            <polymorphic>GGGCTCTTTCTTGTTTCTATCGAAGATTATTTTATCTGTTCAGGACTGGTGCGAGAAAAAAGGAGAAAGACAACGATGGTGAAAAACCGAATCGAAAGACTCCAGAGAAAGATCAACAAATCCTGAAGAGAAAAATTGAGAATGTAAGTGTCATGAAACTTTTTCCCCCTTATAATCTCCATTTTTCAGCGAGCTCAGCGAAAAACCGGACAGGATGCTGCTAGACTTTTCCAAACGACAGATCATTTCTCCACTTCCAAGTCTAGCTCCATTTCTTAATTTTTACTGATTGTTTTGTATTTTTTCATATTTCCTTTATTGTTTTTCATCTAGAGTAGTCTATCGTTTAAGACTGTTTTGCGTTTCTGTGTAATCAATAAAATTGTTTTTGAAAAGCCTGTGTCGTTGGTAAATCGGGGGTAAAATGGGGCTGATGTGGGGCCTATATGGGGATTTCCACCGCGCGCCGCCGACTGCCCAAACGGGAGTTACCTGAGAARATCTCAAAATTAATTGGGCGGGTGTTTTGTCCATGTTCTCTTTTCACTGACTACAAGACATCTTCTAGTTTTCAATTTACTCAGAACAGGTGAATTCTAAAAATATTACGAACATGTATTGATTTTTGGGTCTTTCTCCAGAAGATCATATGCTAATCTGAAGTAACTCTATCGTATCAGACTAGTGGTTATTGTATAACATGTAATAAAAGGACCCCACACTGTCAAGTTTGAGCTCATTTTTCTTGGCTCGGACATCAAAAATCTGTCAAATGATAAAATTTTTGTGATATGATGAGTAAATATTTATCAGTTGACAACTTTTTAATATACAGGAAATGATATGTAATCTTTAAGTTGACAGTTAGAAGGCCCTTTCATTACAGGTATTACAGAAACCCACCGCAATTTCGTCATCGCTTTGCCGATCCATATTGAAGTAATTCAGGAAAAATATAACGTAAATCAACATGAACATCTGAAACTATTAAATCTTCCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>283 259 144 130 110 74</canonical_bands>
                <polymorphic_bands>403 283 130 110 74</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGTTTTTGAAAAGCCTGT</pcr_primer_p1>
		<pcr_primer_p2>CAAAAATCAATACATGTTCGTAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATTGTTTTTGAAAAGCCTGTGTCGTTGGTAAATCGGGGGTAAAATGGGGCTGATGTGGGGCCTATATGGGGATTTCCACCGCGCGCCGCCGACTGCCCAAACGGGAGTTACCTGAGAAGATCTCAAAATTAATTGGGCGGGTGTTTTGTCCATGTTCTCTTTTCACTGACTACAAGACATCTTCTAGTTTTCAATTTACTCAGAACAGGTGAATTCTAAAAATATTACGAACATGTATTGATTTTTG</canonical_amplicon>
		<polymorphic_amplicon>AATTGTTTTTGAAAAGCCTGTGTCGTTGGTAAATCGGGGGTAAAATGGGGCTGATGTGGGGCCTATATGGGGATTTCCACCGCGCGCCGCCGACTGCCCAAACGGGAGTTACCTGAGAARATCTCAAAATTAATTGGGCGGGTGTTTTGTCCATGTTCTCTTTTCACTGACTACAAGACATCTTCTAGTTTTCAATTTACTCAGAACAGGTGAATTCTAAAAATATTACGAACATGTATTGATTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23643</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>117672</contig_pos>
        <strand>+</strand>
        <context>TTAATTGGGC[G/T]GGTGTTTTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCGACTGCCCAAACGGGAGTTACCTGAGAAGATCTCAAAATTAATTGGGC</left_flank>
        <right_flank>GGTGTTTTGTCCATGTTCTCTTTTCACTGACTACAAGACATCTTCTAGTT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAAGATTATTTTATCTGTTCAGGACTGGTGCGAGAAAAAAGGAGAAAGACAACGATGGTGAAAAACCGAATCGAAAGACTCCAGAGAAAGATCAACAAATCCTGAAGAGAAAAATTGAGAATGTAAGTGTCATGAAACTTTTTCCCCCTTATAATCTCCATTTTTCAGCGAGCTCAGCGAAAAACCGGACAGGATGCTGCTAGACTTTTCCAAACGACAGATCATTTCTCCACTTCCAAGTCTAGCTCCATTTCTTAATTTTTACTGATTGTTTTGTATTTTTTCATATTTCCTTTATTGTTTTTCATCTAGAGTAGTCTATCGTTTAAGACTGTTTTGCGTTTCTGTGTAATCAATAAAATTGTTTTTGAAAAGCCTGTGTCGTTGGTAAATCGGGGGTAAAATGGGGCTGATGTGGGGCCTATATGGGGATTTCCACCGCGCGCCGCCGACTGCCCAAACGGGAGTTACCTGAGAAGATCTCAAAATTAATTGGGCGGGTGTTTTGTCCATGTTCTCTTTTCACTGACTACAAGACATCTTCTAGTTTTCAATTTACTCAGAACAGGTGAATTCTAAAAATATTACGAACATGTATTGATTTTTGGGTCTTTCTCCAGAAGATCATATGCTAATCTGAAGTAACTCTATCGTATCAGACTAGTGGTTATTGTATAACATGTAATAAAAGGACCCCACACTGTCAAGTTTGAGCTCATTTTTCTTGGCTCGGACATCAAAAATCTGTCAAATGATAAAATTTTTGTGATATGATGAGTAAATATTTATCAGTTGACAACTTTTTAATATACAGGAAATGATATGTAATCTTTAAGTTGACAGTTAGAAGGCCCTTTCATTACAGGTATTACAGAAACCCACCGCAATTTCGTCATCGCTTTGCCGATCCATATTGAAGTAATTCAGGAAAAATATAACGTAAATCAACATGAACATCTGAAACTATTAAATCTTCCATTCTACTCCAAATTTGAAGTC</canonical>
            <polymorphic>CGAAGATTATTTTATCTGTTCAGGACTGGTGCGAGAAAAAAGGAGAAAGACAACGATGGTGAAAAACCGAATCGAAAGACTCCAGAGAAAGATCAACAAATCCTGAAGAGAAAAATTGAGAATGTAAGTGTCATGAAACTTTTTCCCCCTTATAATCTCCATTTTTCAGCGAGCTCAGCGAAAAACCGGACAGGATGCTGCTAGACTTTTCCAAACGACAGATCATTTCTCCACTTCCAAGTCTAGCTCCATTTCTTAATTTTTACTGATTGTTTTGTATTTTTTCATATTTCCTTTATTGTTTTTCATCTAGAGTAGTCTATCGTTTAAGACTGTTTTGCGTTTCTGTGTAATCAATAAAATTGTTTTTGAAAAGCCTGTGTCGTTGGTAAATCGGGGGTAAAATGGGGCTGATGTGGGGCCTATATGGGGATTTCCACCGCGCGCCGCCGACTGCCCAAACGGGAGTTACCTGAGAAGATCTCAAAATTAATTGGGCKGGTGTTTTGTCCATGTTCTCTTTTCACTGACTACAAGACATCTTCTAGTTTTCAATTTACTCAGAACAGGTGAATTCTAAAAATATTACGAACATGTATTGATTTTTGGGTCTTTCTCCAGAAGATCATATGCTAATCTGAAGTAACTCTATCGTATCAGACTAGTGGTTATTGTATAACATGTAATAAAAGGACCCCACACTGTCAAGTTTGAGCTCATTTTTCTTGGCTCGGACATCAAAAATCTGTCAAATGATAAAATTTTTGTGATATGATGAGTAAATATTTATCAGTTGACAACTTTTTAATATACAGGAAATGATATGTAATCTTTAAGTTGACAGTTAGAAGGCCCTTTCATTACAGGTATTACAGAAACCCACCGCAATTTCGTCATCGCTTTGCCGATCCATATTGAAGTAATTCAGGAAAAATATAACGTAAATCAACATGAACATCTGAAACTATTAAATCTTCCATTCTACTCCAAATTTGAAGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>440 386 117 50 7</canonical_bands>
                <polymorphic_bands>440 436 117 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGTTTTTGAAAAGCCTGT</pcr_primer_p1>
		<pcr_primer_p2>CAAAAATCAATACATGTTCGTAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATTGTTTTTGAAAAGCCTGTGTCGTTGGTAAATCGGGGGTAAAATGGGGCTGATGTGGGGCCTATATGGGGATTTCCACCGCGCGCCGCCGACTGCCCAAACGGGAGTTACCTGAGAAGATCTCAAAATTAATTGGGCGGGTGTTTTGTCCATGTTCTCTTTTCACTGACTACAAGACATCTTCTAGTTTTCAATTTACTCAGAACAGGTGAATTCTAAAAATATTACGAACATGTATTGATTTTTG</canonical_amplicon>
		<polymorphic_amplicon>AATTGTTTTTGAAAAGCCTGTGTCGTTGGTAAATCGGGGGTAAAATGGGGCTGATGTGGGGCCTATATGGGGATTTCCACCGCGCGCCGCCGACTGCCCAAACGGGAGTTACCTGAGAAGATCTCAAAATTAATTGGGCKGGTGTTTTGTCCATGTTCTCTTTTCACTGACTACAAGACATCTTCTAGTTTTCAATTTACTCAGAACAGGTGAATTCTAAAAATATTACGAACATGTATTGATTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23644</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>120720</contig_pos>
        <strand></strand>
        <context>CTAAACAACT[T/G]TTGAACTATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TGTCTTTTTTTTTTTTGCAAAAAAGGACATTTCGAATAATCTAAACAACT</left_flank>
        <right_flank>TTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAA</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAATTCTGAACGGTTGTATTTGTGGATTCTACGCTTGCTCAGTGACCATTCTTGTTCATCATTTTATGTACAAAAACGGGTCCTTGGATGAGCAATGCTCATTGAGCATGTCATTCAACATTTGCTAACTTTTTAAATTTTGATTTTTGAACAAAAATTAATATTTCCGATATTTTAAGGTTTTTGGGCCCTCACTATCTCCTTCGTTTCCCGAGAAGATGAAGGTTTCACAGAACTGACACAGTTGAAATCAGAATGAATTACTTGTCTGTAGAAAAGACATATGGGATTACCTTGAATGTCAGCGAAATTTTTTCAATGAAAATAGGTAACTTTCGTGGGTTCCTCAACGTTCTAGGTGCTATAAATCCACGTAGCTAGGTCGATCCACATCAAGCTTCACACAAGGACTACAACAGCAGACATTCAAGAACTGCCTTTGGCAGGTGTCTTTTTTTTTTTTGCAAAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAA</canonical>
            <polymorphic>CAGAATTCTGAACGGTTGTATTTGTGGATTCTACGCTTGCTCAGTGACCATTCTTGTTCATCATTTTATGTACAAAAACGGGTCCTTGGATGAGCAATGCTCATTGAGCATGTCATTCAACATTTGCTAACTTTTTAAATTTTGATTTTTGAACAAAAATTAATATTTCCGATATTTTAAGGTTTTTGGGCCCTCACTATCTCCTTCGTTTCCCGAGAAGATGAAGGTTTCACAGAACTGACACAGTTGAAATCAGAATGAATTACTTGTCTGTAGAAAAGACATATGGGATTACCTTGAATGTCAGCGAAATTTTTTCAATGAAAATAGGTAACTTTCGTGGGTTCCTCAACGTTCTAGGTGCTATAAATCCACGTAGCTAGGTCGATCCACATCAAGCTTCACACAAGGACTACAACAGCAGACATTCAAGAACTGCCTTTGGCAGGTGTCTTTTTTTTTTTTGCAAAAAAGGACATTTCGAATAATCTAAACAACTKTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAACGTTCTAGGTGCTATAAA</pcr_primer_p1>
		<pcr_primer_p2>CACATTTCCTGATTCATTTTTAC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTCAACGTTCTAGGTGCTATAAATCCACGTAGCTAGGTCGATCCACATCAAGCTTCACACAAGGACTACAACAGCAGACATTCAAGAACTGCCTTTGGCAGGTGTCTTTTTTTTTTTTGCAAAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTG</canonical_amplicon>
		<polymorphic_amplicon>CTCAACGTTCTAGGTGCTATAAATCCACGTAGCTAGGTCGATCCACATCAAGCTTCACACAAGGACTACAACAGCAGACATTCAAGAACTGCCTTTGGCAGGTGTCTTTTTTTTTTTTGCAAAAAAGGACATTTCGAATAATCTAAACAACTKTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23645</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>120776</contig_pos>
        <strand>+</strand>
        <context>TAAAATCACA[C/T]GTTCCTGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACA</left_flank>
        <right_flank>GTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAG</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCATCATTTTATGTACAAAAACGGGTCCTTGGATGAGCAATGCTCATTGAGCATGTCATTCAACATTTGCTAACTTTTTAAATTTTGATTTTTGAACAAAAATTAATATTTCCGATATTTTAAGGTTTTTGGGCCCTCACTATCTCCTTCGTTTCCCGAGAAGATGAAGGTTTCACAGAACTGACACAGTTGAAATCAGAATGAATTACTTGTCTGTAGAAAAGACATATGGGATTACCTTGAATGTCAGCGAAATTTTTTCAATGAAAATAGGTAACTTTCGTGGGTTCCTCAACGTTCTAGGTGCTATAAATCCACGTAGCTAGGTCGATCCACATCAAGCTTCACACAAGGACTACAACAGCAGACATTCAAGAACTGCCTTTGGCAGGTGTCTTTTTTTTTTTTGCAAAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTGTCTCTGATGCTTTTACCCAGCTATCGATACTCTTCC</canonical>
            <polymorphic>TTCATCATTTTATGTACAAAAACGGGTCCTTGGATGAGCAATGCTCATTGAGCATGTCATTCAACATTTGCTAACTTTTTAAATTTTGATTTTTGAACAAAAATTAATATTTCCGATATTTTAAGGTTTTTGGGCCCTCACTATCTCCTTCGTTTCCCGAGAAGATGAAGGTTTCACAGAACTGACACAGTTGAAATCAGAATGAATTACTTGTCTGTAGAAAAGACATATGGGATTACCTTGAATGTCAGCGAAATTTTTTCAATGAAAATAGGTAACTTTCGTGGGTTCCTCAACGTTCTAGGTGCTATAAATCCACGTAGCTAGGTCGATCCACATCAAGCTTCACACAAGGACTACAACAGCAGACATTCAAGAACTGCCTTTGGCAGGTGTCTTTTTTTTTTTTGCAAAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACAYGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTGTCTCTGATGCTTTTACCCAGCTATCGATACTCTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>497 449 54</canonical_bands>
                <polymorphic_bands>551 449</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>145 140 104 102 99 70 48 45 36 36 35 31 29 21 18 12 11 11 3 2 2</canonical_bands>
                <polymorphic_bands>145 140 104 102 99 70 48 45 37 36 36 31 29 21 18 12 11 11 3 2</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>298 296 203 181 22</canonical_bands>
                <polymorphic_bands>384 298 296 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGGACATTTCGAATAATCT</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGATGGTCTGAAAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACAYGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23646</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>120830</contig_pos>
        <strand>+</strand>
        <context>CCCAAAGACA[A/T]GTTCGTAACC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACA</left_flank>
        <right_flank>GTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTCATTCAACATTTGCTAACTTTTTAAATTTTGATTTTTGAACAAAAATTAATATTTCCGATATTTTAAGGTTTTTGGGCCCTCACTATCTCCTTCGTTTCCCGAGAAGATGAAGGTTTCACAGAACTGACACAGTTGAAATCAGAATGAATTACTTGTCTGTAGAAAAGACATATGGGATTACCTTGAATGTCAGCGAAATTTTTTCAATGAAAATAGGTAACTTTCGTGGGTTCCTCAACGTTCTAGGTGCTATAAATCCACGTAGCTAGGTCGATCCACATCAAGCTTCACACAAGGACTACAACAGCAGACATTCAAGAACTGCCTTTGGCAGGTGTCTTTTTTTTTTTTGCAAAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTGTCTCTGATGCTTTTACCCAGCTATCGATACTCTTCCAAAATTATTCGTTGTCAAAAATTAAAAGAAAGCAACACTTCTATTTTGAACCTA</canonical>
            <polymorphic>TGTCATTCAACATTTGCTAACTTTTTAAATTTTGATTTTTGAACAAAAATTAATATTTCCGATATTTTAAGGTTTTTGGGCCCTCACTATCTCCTTCGTTTCCCGAGAAGATGAAGGTTTCACAGAACTGACACAGTTGAAATCAGAATGAATTACTTGTCTGTAGAAAAGACATATGGGATTACCTTGAATGTCAGCGAAATTTTTTCAATGAAAATAGGTAACTTTCGTGGGTTCCTCAACGTTCTAGGTGCTATAAATCCACGTAGCTAGGTCGATCCACATCAAGCTTCACACAAGGACTACAACAGCAGACATTCAAGAACTGCCTTTGGCAGGTGTCTTTTTTTTTTTTGCAAAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACAWGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTGTCTCTGATGCTTTTACCCAGCTATCGATACTCTTCCAAAATTATTCGTTGTCAAAAATTAAAAGAAAGCAACACTTCTATTTTGAACCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 443 54</canonical_bands>
                <polymorphic_bands>557 443</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>498 487 15</canonical_bands>
                <polymorphic_bands>513 487</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGGACATTTCGAATAATCT</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGATGGTCTGAAAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACAWGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23647</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>120852</contig_pos>
        <strand>+</strand>
        <context>TCATGATGTA[A/G]TACAAGATTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTA</left_flank>
        <right_flank>TACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTAAATTTTGATTTTTGAACAAAAATTAATATTTCCGATATTTTAAGGTTTTTGGGCCCTCACTATCTCCTTCGTTTCCCGAGAAGATGAAGGTTTCACAGAACTGACACAGTTGAAATCAGAATGAATTACTTGTCTGTAGAAAAGACATATGGGATTACCTTGAATGTCAGCGAAATTTTTTCAATGAAAATAGGTAACTTTCGTGGGTTCCTCAACGTTCTAGGTGCTATAAATCCACGTAGCTAGGTCGATCCACATCAAGCTTCACACAAGGACTACAACAGCAGACATTCAAGAACTGCCTTTGGCAGGTGTCTTTTTTTTTTTTGCAAAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTGTCTCTGATGCTTTTACCCAGCTATCGATACTCTTCCAAAATTATTCGTTGTCAAAAATTAAAAGAAAGCAACACTTCTATTTTGAACCTAATGATTTCTGAGTTCCTCTCGA</canonical>
            <polymorphic>TTTTAAATTTTGATTTTTGAACAAAAATTAATATTTCCGATATTTTAAGGTTTTTGGGCCCTCACTATCTCCTTCGTTTCCCGAGAAGATGAAGGTTTCACAGAACTGACACAGTTGAAATCAGAATGAATTACTTGTCTGTAGAAAAGACATATGGGATTACCTTGAATGTCAGCGAAATTTTTTCAATGAAAATAGGTAACTTTCGTGGGTTCCTCAACGTTCTAGGTGCTATAAATCCACGTAGCTAGGTCGATCCACATCAAGCTTCACACAAGGACTACAACAGCAGACATTCAAGAACTGCCTTTGGCAGGTGTCTTTTTTTTTTTTGCAAAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTARTACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTGTCTCTGATGCTTTTACCCAGCTATCGATACTCTTCCAAAATTATTCGTTGTCAAAAATTAAAAGAAAGCAACACTTCTATTTTGAACCTAATGATTTCTGAGTTCCTCTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGGACATTTCGAATAATCT</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGATGGTCTGAAAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTARTACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23648</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>120951</contig_pos>
        <strand>+</strand>
        <context>GTGTTTCTGT[A/T]TTTGCTCAaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGT</left_flank>
        <right_flank>TTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGAACTGACACAGTTGAAATCAGAATGAATTACTTGTCTGTAGAAAAGACATATGGGATTACCTTGAATGTCAGCGAAATTTTTTCAATGAAAATAGGTAACTTTCGTGGGTTCCTCAACGTTCTAGGTGCTATAAATCCACGTAGCTAGGTCGATCCACATCAAGCTTCACACAAGGACTACAACAGCAGACATTCAAGAACTGCCTTTGGCAGGTGTCTTTTTTTTTTTTGCAAAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTGTCTCTGATGCTTTTACCCAGCTATCGATACTCTTCCAAAATTATTCGTTGTCAAAAATTAAAAGAAAGCAACACTTCTATTTTGAACCTAATGATTTCTGAGTTCCTCTCGAGCCATTTTTTCGAGCAAAAAGTTCCTCAAATGTCTGCGAAACGTCTCCATATCCTTCGCATGTTATGACTAGTCGTACTTCAACATGATCTTTCTAGTT</canonical>
            <polymorphic>ACAGAACTGACACAGTTGAAATCAGAATGAATTACTTGTCTGTAGAAAAGACATATGGGATTACCTTGAATGTCAGCGAAATTTTTTCAATGAAAATAGGTAACTTTCGTGGGTTCCTCAACGTTCTAGGTGCTATAAATCCACGTAGCTAGGTCGATCCACATCAAGCTTCACACAAGGACTACAACAGCAGACATTCAAGAACTGCCTTTGGCAGGTGTCTTTTTTTTTTTTGCAAAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGTWTTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTGTCTCTGATGCTTTTACCCAGCTATCGATACTCTTCCAAAATTATTCGTTGTCAAAAATTAAAAGAAAGCAACACTTCTATTTTGAACCTAATGATTTCTGAGTTCCTCTCGAGCCATTTTTTCGAGCAAAAAGTTCCTCAAATGTCTGCGAAACGTCTCCATATCCTTCGCATGTTATGACTAGTCGTACTTCAACATGATCTTTCTAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAAGAATAGATTTGTCGAGTGT</pcr_primer_p1>
		<pcr_primer_p2>GCACTACAATTTCCAATTTTAAC</pcr_primer_p2>
		<pcr_amplicon_size>338</pcr_amplicon_size>
		<canonical_amplicon>TGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGC</canonical_amplicon>
		<polymorphic_amplicon>TGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGTWTTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23649</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>120994</contig_pos>
        <strand></strand>
        <context>aatttgagct[G/C]cattatctcg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCT</left_flank>
        <right_flank>CATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAAAGACATATGGGATTACCTTGAATGTCAGCGAAATTTTTTCAATGAAAATAGGTAACTTTCGTGGGTTCCTCAACGTTCTAGGTGCTATAAATCCACGTAGCTAGGTCGATCCACATCAAGCTTCACACAAGGACTACAACAGCAGACATTCAAGAACTGCCTTTGGCAGGTGTCTTTTTTTTTTTTGCAAAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTGTCTCTGATGCTTTTACCCAGCTATCGATACTCTTCCAAAATTATTCGTTGTCAAAAATTAAAAGAAAGCAACACTTCTATTTTGAACCTAATGATTTCTGAGTTCCTCTCGAGCCATTTTTTCGAGCAAAAAGTTCCTCAAATGTCTGCGAAACGTCTCCATATCCTTCGCATGTTATGACTAGTCGTACTTCAACATGATCTTTCTAGTTTACTAGAACATAATTTTATTCAGCTGCTTGTCAGACCTTCCGG</canonical>
            <polymorphic>AGAAAAGACATATGGGATTACCTTGAATGTCAGCGAAATTTTTTCAATGAAAATAGGTAACTTTCGTGGGTTCCTCAACGTTCTAGGTGCTATAAATCCACGTAGCTAGGTCGATCCACATCAAGCTTCACACAAGGACTACAACAGCAGACATTCAAGAACTGCCTTTGGCAGGTGTCTTTTTTTTTTTTGCAAAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTSCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTGTCTCTGATGCTTTTACCCAGCTATCGATACTCTTCCAAAATTATTCGTTGTCAAAAATTAAAAGAAAGCAACACTTCTATTTTGAACCTAATGATTTCTGAGTTCCTCTCGAGCCATTTTTTCGAGCAAAAAGTTCCTCAAATGTCTGCGAAACGTCTCCATATCCTTCGCATGTTATGACTAGTCGTACTTCAACATGATCTTTCTAGTTTACTAGAACATAATTTTATTCAGCTGCTTGTCAGACCTTCCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 483 17</canonical_bands>
                <polymorphic_bands>983 17</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>266 192 184 149 124 85</canonical_bands>
                <polymorphic_bands>333 266 192 124 85</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>497 483 20</canonical_bands>
                <polymorphic_bands>980 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATCTTCAAGGTGTTTCTG</pcr_primer_p1>
		<pcr_primer_p2>GCACTACAATTTCCAATTTTAAC</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>CCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGC</canonical_amplicon>
		<polymorphic_amplicon>CCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTSCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23650</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>121047</contig_pos>
        <strand></strand>
        <context>tgataaaata[G/T]tggtgatatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATA</left_flank>
        <right_flank>TGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGGTAACTTTCGTGGGTTCCTCAACGTTCTAGGTGCTATAAATCCACGTAGCTAGGTCGATCCACATCAAGCTTCACACAAGGACTACAACAGCAGACATTCAAGAACTGCCTTTGGCAGGTGTCTTTTTTTTTTTTGCAAAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTGTCTCTGATGCTTTTACCCAGCTATCGATACTCTTCCAAAATTATTCGTTGTCAAAAATTAAAAGAAAGCAACACTTCTATTTTGAACCTAATGATTTCTGAGTTCCTCTCGAGCCATTTTTTCGAGCAAAAAGTTCCTCAAATGTCTGCGAAACGTCTCCATATCCTTCGCATGTTATGACTAGTCGTACTTCAACATGATCTTTCTAGTTTACTAGAACATAATTTTATTCAGCTGCTTGTCAGACCTTCCGGGCTTATTTATATAATATTTTTAAGATCTGAATGTATTAGTCATAAAGTATTTT</canonical>
            <polymorphic>TAGGTAACTTTCGTGGGTTCCTCAACGTTCTAGGTGCTATAAATCCACGTAGCTAGGTCGATCCACATCAAGCTTCACACAAGGACTACAACAGCAGACATTCAAGAACTGCCTTTGGCAGGTGTCTTTTTTTTTTTTGCAAAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAKTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTGTCTCTGATGCTTTTACCCAGCTATCGATACTCTTCCAAAATTATTCGTTGTCAAAAATTAAAAGAAAGCAACACTTCTATTTTGAACCTAATGATTTCTGAGTTCCTCTCGAGCCATTTTTTCGAGCAAAAAGTTCCTCAAATGTCTGCGAAACGTCTCCATATCCTTCGCATGTTATGACTAGTCGTACTTCAACATGATCTTTCTAGTTTACTAGAACATAATTTTATTCAGCTGCTTGTCAGACCTTCCGGGCTTATTTATATAATATTTTTAAGATCTGAATGTATTAGTCATAAAGTATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>234 145 104 102 85 70 45 36 35 31 29 21 18 15 12 11 3 2 2</canonical_bands>
                <polymorphic_bands>234 145 104 102 85 70 45 39 35 31 29 21 18 15 12 11 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATCTTCAAGGTGTTTCTG</pcr_primer_p1>
		<pcr_primer_p2>GCACTACAATTTCCAATTTTAAC</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>CCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGC</canonical_amplicon>
		<polymorphic_amplicon>CCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAKTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23651</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>121120</contig_pos>
        <strand></strand>
        <context>agaaaaatga[T/G]ctcaaatttg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGA</left_flank>
        <right_flank>CTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCACACAAGGACTACAACAGCAGACATTCAAGAACTGCCTTTGGCAGGTGTCTTTTTTTTTTTTGCAAAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTGTCTCTGATGCTTTTACCCAGCTATCGATACTCTTCCAAAATTATTCGTTGTCAAAAATTAAAAGAAAGCAACACTTCTATTTTGAACCTAATGATTTCTGAGTTCCTCTCGAGCCATTTTTTCGAGCAAAAAGTTCCTCAAATGTCTGCGAAACGTCTCCATATCCTTCGCATGTTATGACTAGTCGTACTTCAACATGATCTTTCTAGTTTACTAGAACATAATTTTATTCAGCTGCTTGTCAGACCTTCCGGGCTTATTTATATAATATTTTTAAGATCTGAATGTATTAGTCATAAAGTATTTTTTGTTTTTTTTTCATGTTGCATTGTTTTTCTTCTTGCTTCAGTCTAGAAACTATGTATGCCTAATTATCATTA</canonical>
            <polymorphic>TTCACACAAGGACTACAACAGCAGACATTCAAGAACTGCCTTTGGCAGGTGTCTTTTTTTTTTTTGCAAAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGAKCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTGTCTCTGATGCTTTTACCCAGCTATCGATACTCTTCCAAAATTATTCGTTGTCAAAAATTAAAAGAAAGCAACACTTCTATTTTGAACCTAATGATTTCTGAGTTCCTCTCGAGCCATTTTTTCGAGCAAAAAGTTCCTCAAATGTCTGCGAAACGTCTCCATATCCTTCGCATGTTATGACTAGTCGTACTTCAACATGATCTTTCTAGTTTACTAGAACATAATTTTATTCAGCTGCTTGTCAGACCTTCCGGGCTTATTTATATAATATTTTTAAGATCTGAATGTATTAGTCATAAAGTATTTTTTGTTTTTTTTTCATGTTGCATTGTTTTTCTTCTTGCTTCAGTCTAGAAACTATGTATGCCTAATTATCATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>442 321 103 79 41 14</canonical_bands>
                <polymorphic_bands>442 335 103 79 41</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATCTTCAAGGTGTTTCTG</pcr_primer_p1>
		<pcr_primer_p2>GCACTACAATTTCCAATTTTAAC</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>CCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGC</canonical_amplicon>
		<polymorphic_amplicon>CCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGAKCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23652</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>121152</contig_pos>
        <strand></strand>
        <context>tgcattctat[T/G]aGGGGATATA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTAT</left_flank>
        <right_flank>AGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACTGCCTTTGGCAGGTGTCTTTTTTTTTTTTGCAAAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTGTCTCTGATGCTTTTACCCAGCTATCGATACTCTTCCAAAATTATTCGTTGTCAAAAATTAAAAGAAAGCAACACTTCTATTTTGAACCTAATGATTTCTGAGTTCCTCTCGAGCCATTTTTTCGAGCAAAAAGTTCCTCAAATGTCTGCGAAACGTCTCCATATCCTTCGCATGTTATGACTAGTCGTACTTCAACATGATCTTTCTAGTTTACTAGAACATAATTTTATTCAGCTGCTTGTCAGACCTTCCGGGCTTATTTATATAATATTTTTAAGATCTGAATGTATTAGTCATAAAGTATTTTTTGTTTTTTTTTCATGTTGCATTGTTTTTCTTCTTGCTTCAGTCTAGAAACTATGTATGCCTAATTATCATTATCAGGTCTGTCTCTGACGCAAAGATGACATGT</canonical>
            <polymorphic>GAACTGCCTTTGGCAGGTGTCTTTTTTTTTTTTGCAAAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATKAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTGTCTCTGATGCTTTTACCCAGCTATCGATACTCTTCCAAAATTATTCGTTGTCAAAAATTAAAAGAAAGCAACACTTCTATTTTGAACCTAATGATTTCTGAGTTCCTCTCGAGCCATTTTTTCGAGCAAAAAGTTCCTCAAATGTCTGCGAAACGTCTCCATATCCTTCGCATGTTATGACTAGTCGTACTTCAACATGATCTTTCTAGTTTACTAGAACATAATTTTATTCAGCTGCTTGTCAGACCTTCCGGGCTTATTTATATAATATTTTTAAGATCTGAATGTATTAGTCATAAAGTATTTTTTGTTTTTTTTTCATGTTGCATTGTTTTTCTTCTTGCTTCAGTCTAGAAACTATGTATGCCTAATTATCATTATCAGGTCTGTCTCTGACGCAAAGATGACATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATCTTCAAGGTGTTTCTG</pcr_primer_p1>
		<pcr_primer_p2>GCACTACAATTTCCAATTTTAAC</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>CCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGC</canonical_amplicon>
		<polymorphic_amplicon>CCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATKAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23653</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>121177</contig_pos>
        <strand></strand>
        <context>GCTCTACATC[T/C]YYYTTYTYAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATC</left_flank>
        <right_flank>TGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTTGCAAAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTGTCTCTGATGCTTTTACCCAGCTATCGATACTCTTCCAAAATTATTCGTTGTCAAAAATTAAAAGAAAGCAACACTTCTATTTTGAACCTAATGATTTCTGAGTTCCTCTCGAGCCATTTTTTCGAGCAAAAAGTTCCTCAAATGTCTGCGAAACGTCTCCATATCCTTCGCATGTTATGACTAGTCGTACTTCAACATGATCTTTCTAGTTTACTAGAACATAATTTTATTCAGCTGCTTGTCAGACCTTCCGGGCTTATTTATATAATATTTTTAAGATCTGAATGTATTAGTCATAAAGTATTTTTTGTTTTTTTTTCATGTTGCATTGTTTTTCTTCTTGCTTCAGTCTAGAAACTATGTATGCCTAATTATCATTATCAGGTCTGTCTCTGACGCAAAGATGACATGTTGAAACTTCAAAAAGATACAAAAGG</canonical>
            <polymorphic>TTTTTTTTGCAAAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCYTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTGTCTCTGATGCTTTTACCCAGCTATCGATACTCTTCCAAAATTATTCGTTGTCAAAAATTAAAAGAAAGCAACACTTCTATTTTGAACCTAATGATTTCTGAGTTCCTCTCGAGCCATTTTTTCGAGCAAAAAGTTCCTCAAATGTCTGCGAAACGTCTCCATATCCTTCGCATGTTATGACTAGTCGTACTTCAACATGATCTTTCTAGTTTACTAGAACATAATTTTATTCAGCTGCTTGTCAGACCTTCCGGGCTTATTTATATAATATTTTTAAGATCTGAATGTATTAGTCATAAAGTATTTTTTGTTTTTTTTTCATGTTGCATTGTTTTTCTTCTTGCTTCAGTCTAGAAACTATGTATGCCTAATTATCATTATCAGGTCTGTCTCTGACGCAAAGATGACATGTTGAAACTTCAAAAAGATACAAAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATCTTCAAGGTGTTTCTG</pcr_primer_p1>
		<pcr_primer_p2>CAGTCATAAATGCACTACAATTTC</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>CCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTG</canonical_amplicon>
		<polymorphic_amplicon>CCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCYTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23654</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>121178</contig_pos>
        <strand></strand>
        <context>CTCTACATCY[T/C]YYTTYTYATA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCT</left_flank>
        <right_flank>GTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTGCAAAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTGTCTCTGATGCTTTTACCCAGCTATCGATACTCTTCCAAAATTATTCGTTGTCAAAAATTAAAAGAAAGCAACACTTCTATTTTGAACCTAATGATTTCTGAGTTCCTCTCGAGCCATTTTTTCGAGCAAAAAGTTCCTCAAATGTCTGCGAAACGTCTCCATATCCTTCGCATGTTATGACTAGTCGTACTTCAACATGATCTTTCTAGTTTACTAGAACATAATTTTATTCAGCTGCTTGTCAGACCTTCCGGGCTTATTTATATAATATTTTTAAGATCTGAATGTATTAGTCATAAAGTATTTTTTGTTTTTTTTTCATGTTGCATTGTTTTTCTTCTTGCTTCAGTCTAGAAACTATGTATGCCTAATTATCATTATCAGGTCTGTCTCTGACGCAAAGATGACATGTTGAAACTTCAAAAAGATACAAAAGGA</canonical>
            <polymorphic>TTTTTTTGCAAAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTYGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTGTCTCTGATGCTTTTACCCAGCTATCGATACTCTTCCAAAATTATTCGTTGTCAAAAATTAAAAGAAAGCAACACTTCTATTTTGAACCTAATGATTTCTGAGTTCCTCTCGAGCCATTTTTTCGAGCAAAAAGTTCCTCAAATGTCTGCGAAACGTCTCCATATCCTTCGCATGTTATGACTAGTCGTACTTCAACATGATCTTTCTAGTTTACTAGAACATAATTTTATTCAGCTGCTTGTCAGACCTTCCGGGCTTATTTATATAATATTTTTAAGATCTGAATGTATTAGTCATAAAGTATTTTTTGTTTTTTTTTCATGTTGCATTGTTTTTCTTCTTGCTTCAGTCTAGAAACTATGTATGCCTAATTATCATTATCAGGTCTGTCTCTGACGCAAAGATGACATGTTGAAACTTCAAAAAGATACAAAAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATCTTCAAGGTGTTTCTG</pcr_primer_p1>
		<pcr_primer_p2>CAGTCATAAATGCACTACAATTTC</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>CCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTG</canonical_amplicon>
		<polymorphic_amplicon>CCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTYGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23655</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>121179</contig_pos>
        <strand>+</strand>
        <context>TCTACATCYY[C/T]YTTYTYATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTT</left_flank>
        <right_flank>TTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTGCAAAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTGTCTCTGATGCTTTTACCCAGCTATCGATACTCTTCCAAAATTATTCGTTGTCAAAAATTAAAAGAAAGCAACACTTCTATTTTGAACCTAATGATTTCTGAGTTCCTCTCGAGCCATTTTTTCGAGCAAAAAGTTCCTCAAATGTCTGCGAAACGTCTCCATATCCTTCGCATGTTATGACTAGTCGTACTTCAACATGATCTTTCTAGTTTACTAGAACATAATTTTATTCAGCTGCTTGTCAGACCTTCCGGGCTTATTTATATAATATTTTTAAGATCTGAATGTATTAGTCATAAAGTATTTTTTGTTTTTTTTTCATGTTGCATTGTTTTTCTTCTTGCTTCAGTCTAGAAACTATGTATGCCTAATTATCATTATCAGGTCTGTCTCTGACGCAAAGATGACATGTTGAAACTTCAAAAAGATACAAAAGGAA</canonical>
            <polymorphic>TTTTTTGCAAAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTYTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTGTCTCTGATGCTTTTACCCAGCTATCGATACTCTTCCAAAATTATTCGTTGTCAAAAATTAAAAGAAAGCAACACTTCTATTTTGAACCTAATGATTTCTGAGTTCCTCTCGAGCCATTTTTTCGAGCAAAAAGTTCCTCAAATGTCTGCGAAACGTCTCCATATCCTTCGCATGTTATGACTAGTCGTACTTCAACATGATCTTTCTAGTTTACTAGAACATAATTTTATTCAGCTGCTTGTCAGACCTTCCGGGCTTATTTATATAATATTTTTAAGATCTGAATGTATTAGTCATAAAGTATTTTTTGTTTTTTTTTCATGTTGCATTGTTTTTCTTCTTGCTTCAGTCTAGAAACTATGTATGCCTAATTATCATTATCAGGTCTGTCTCTGACGCAAAGATGACATGTTGAAACTTCAAAAAGATACAAAAGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATCTTCAAGGTGTTTCTG</pcr_primer_p1>
		<pcr_primer_p2>CAGTCATAAATGCACTACAATTTC</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>CCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTG</canonical_amplicon>
		<polymorphic_amplicon>CCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTYTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23656</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>121180</contig_pos>
        <strand>+</strand>
        <context>CTACATCYYY[C/T]TTYTYATAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTG</left_flank>
        <right_flank>TTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGCAAAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTGTCTCTGATGCTTTTACCCAGCTATCGATACTCTTCCAAAATTATTCGTTGTCAAAAATTAAAAGAAAGCAACACTTCTATTTTGAACCTAATGATTTCTGAGTTCCTCTCGAGCCATTTTTTCGAGCAAAAAGTTCCTCAAATGTCTGCGAAACGTCTCCATATCCTTCGCATGTTATGACTAGTCGTACTTCAACATGATCTTTCTAGTTTACTAGAACATAATTTTATTCAGCTGCTTGTCAGACCTTCCGGGCTTATTTATATAATATTTTTAAGATCTGAATGTATTAGTCATAAAGTATTTTTTGTTTTTTTTTCATGTTGCATTGTTTTTCTTCTTGCTTCAGTCTAGAAACTATGTATGCCTAATTATCATTATCAGGTCTGTCTCTGACGCAAAGATGACATGTTGAAACTTCAAAAAGATACAAAAGGAAA</canonical>
            <polymorphic>TTTTTGCAAAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGYTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTGTCTCTGATGCTTTTACCCAGCTATCGATACTCTTCCAAAATTATTCGTTGTCAAAAATTAAAAGAAAGCAACACTTCTATTTTGAACCTAATGATTTCTGAGTTCCTCTCGAGCCATTTTTTCGAGCAAAAAGTTCCTCAAATGTCTGCGAAACGTCTCCATATCCTTCGCATGTTATGACTAGTCGTACTTCAACATGATCTTTCTAGTTTACTAGAACATAATTTTATTCAGCTGCTTGTCAGACCTTCCGGGCTTATTTATATAATATTTTTAAGATCTGAATGTATTAGTCATAAAGTATTTTTTGTTTTTTTTTCATGTTGCATTGTTTTTCTTCTTGCTTCAGTCTAGAAACTATGTATGCCTAATTATCATTATCAGGTCTGTCTCTGACGCAAAGATGACATGTTGAAACTTCAAAAAGATACAAAAGGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATCTTCAAGGTGTTTCTG</pcr_primer_p1>
		<pcr_primer_p2>CAGTCATAAATGCACTACAATTTC</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>CCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTG</canonical_amplicon>
		<polymorphic_amplicon>CCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGYTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23657</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>121183</contig_pos>
        <strand></strand>
        <context>CATCYYYYTT[C/T]TYATAAATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTT</left_flank>
        <right_flank>TCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCAAAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTGTCTCTGATGCTTTTACCCAGCTATCGATACTCTTCCAAAATTATTCGTTGTCAAAAATTAAAAGAAAGCAACACTTCTATTTTGAACCTAATGATTTCTGAGTTCCTCTCGAGCCATTTTTTCGAGCAAAAAGTTCCTCAAATGTCTGCGAAACGTCTCCATATCCTTCGCATGTTATGACTAGTCGTACTTCAACATGATCTTTCTAGTTTACTAGAACATAATTTTATTCAGCTGCTTGTCAGACCTTCCGGGCTTATTTATATAATATTTTTAAGATCTGAATGTATTAGTCATAAAGTATTTTTTGTTTTTTTTTCATGTTGCATTGTTTTTCTTCTTGCTTCAGTCTAGAAACTATGTATGCCTAATTATCATTATCAGGTCTGTCTCTGACGCAAAGATGACATGTTGAAACTTCAAAAAGATACAAAAGGAAACAT</canonical>
            <polymorphic>TTGCAAAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTYTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTGTCTCTGATGCTTTTACCCAGCTATCGATACTCTTCCAAAATTATTCGTTGTCAAAAATTAAAAGAAAGCAACACTTCTATTTTGAACCTAATGATTTCTGAGTTCCTCTCGAGCCATTTTTTCGAGCAAAAAGTTCCTCAAATGTCTGCGAAACGTCTCCATATCCTTCGCATGTTATGACTAGTCGTACTTCAACATGATCTTTCTAGTTTACTAGAACATAATTTTATTCAGCTGCTTGTCAGACCTTCCGGGCTTATTTATATAATATTTTTAAGATCTGAATGTATTAGTCATAAAGTATTTTTTGTTTTTTTTTCATGTTGCATTGTTTTTCTTCTTGCTTCAGTCTAGAAACTATGTATGCCTAATTATCATTATCAGGTCTGTCTCTGACGCAAAGATGACATGTTGAAACTTCAAAAAGATACAAAAGGAAACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATCTTCAAGGTGTTTCTG</pcr_primer_p1>
		<pcr_primer_p2>CAGTCATAAATGCACTACAATTTC</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>CCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTG</canonical_amplicon>
		<polymorphic_amplicon>CCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTYTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23658</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>121185</contig_pos>
        <strand>+</strand>
        <context>TCYYYYTTYT[C/T]ATAAATTTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCT</left_flank>
        <right_flank>ATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAAAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTGTCTCTGATGCTTTTACCCAGCTATCGATACTCTTCCAAAATTATTCGTTGTCAAAAATTAAAAGAAAGCAACACTTCTATTTTGAACCTAATGATTTCTGAGTTCCTCTCGAGCCATTTTTTCGAGCAAAAAGTTCCTCAAATGTCTGCGAAACGTCTCCATATCCTTCGCATGTTATGACTAGTCGTACTTCAACATGATCTTTCTAGTTTACTAGAACATAATTTTATTCAGCTGCTTGTCAGACCTTCCGGGCTTATTTATATAATATTTTTAAGATCTGAATGTATTAGTCATAAAGTATTTTTTGTTTTTTTTTCATGTTGCATTGTTTTTCTTCTTGCTTCAGTCTAGAAACTATGTATGCCTAATTATCATTATCAGGTCTGTCTCTGACGCAAAGATGACATGTTGAAACTTCAAAAAGATACAAAAGGAAACATAT</canonical>
            <polymorphic>GCAAAAAAGGACATTTCGAATAATCTAAACAACTTTTGAACTATTGCTCCCAGGAAATGTATAATTTTCTCAATATAAGCTAAAATCACACGTTCCTGAAATGTAAAAATGAATCAGGAAATGTGCATAGGTTCCCCAAAGACATGTTCGTAACCATCATGATGTAATACAAGATTATTTTTAAACATCTCAGTTTTGAGAAAAGATGTAAGAATAGATTTGTCGAGTGTAAAACTTTTTCAGACCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTYATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTGTCTCTGATGCTTTTACCCAGCTATCGATACTCTTCCAAAATTATTCGTTGTCAAAAATTAAAAGAAAGCAACACTTCTATTTTGAACCTAATGATTTCTGAGTTCCTCTCGAGCCATTTTTTCGAGCAAAAAGTTCCTCAAATGTCTGCGAAACGTCTCCATATCCTTCGCATGTTATGACTAGTCGTACTTCAACATGATCTTTCTAGTTTACTAGAACATAATTTTATTCAGCTGCTTGTCAGACCTTCCGGGCTTATTTATATAATATTTTTAAGATCTGAATGTATTAGTCATAAAGTATTTTTTGTTTTTTTTTCATGTTGCATTGTTTTTCTTCTTGCTTCAGTCTAGAAACTATGTATGCCTAATTATCATTATCAGGTCTGTCTCTGACGCAAAGATGACATGTTGAAACTTCAAAAAGATACAAAAGGAAACATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATCTTCAAGGTGTTTCTG</pcr_primer_p1>
		<pcr_primer_p2>CAGTCATAAATGCACTACAATTTC</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>CCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTCATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTG</canonical_amplicon>
		<polymorphic_amplicon>CCATCTTCAAGGTGTTTCTGTATTTGCTCAAATAGAAGCCCAACTTATACGTACAATTTGAGCTGCATTATCTCGATTCCTGTGAAAGATATTAAAAATCTATCAACTGATAAAATAGTGGTGATATTATGATGATCAATTCAACAGTTGACAAAATTTTGAAAACTTTCGAAGGATCCGAGAAAAATGATCTCAAATTTGACTGATTGGGTTGCATTCTATTAGGGGATATAGTATGCTCTACATCTTGTTTCTYATAAATTTCCCACGCTTTCGAGTTAAAATTGGAAATTGTAGTGCATTTATGACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23659</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>124691</contig_pos>
        <strand>+</strand>
        <context>CCCCTTCTCC[G/T]GGCTCCAGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTATAAAGGAAGAGGGAAATGGAGGGAAGAATCAGTTCTCCCCTTCTCC</left_flank>
        <right_flank>GGCTCCAGAGAAGGGGAACCCGAGGGAGGGATCCGGGTTCTGGAGCCCGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATTCTCAATGAAGATGTTTCTTTATCAGACTATCATGATGGTACTTATTTTTGATACCGTACATTATTGATCTAATAGGATCTCACCCTTGCGTGCATTTCGAGCTCAGTTATCTCGGTTCTTGCAAAAGGCATCAAATAGTAGTCAACTGACAAAGTATTTTCTATGTTATAATTAATCTGTTGTCAGTTGACAGAAACCTTTAATTAGTTGAAATTTTGTTGATAGCTCAACCAGGAAACGAATTCAGGTCAAAGTGATAGTCGTTTTAAGGAGTTTCACAGATTTCAAAAAAAATCAAGTGTTATTAAAACGTAATGAAAAATTACTTATTCATTTTTTTAAAAATCCGCGGGGCAAAAAAATTTCAAAAAATTTCAATACTCCGCCAAAAATTCGACGTAAAAAATCCACGACCCTCGATGTCCCATTGACTCCGGGAAGAATACTATAAAGGAAGAGGGAAATGGAGGGAAGAATCAGTTCTCCCCTTCTCCGGGCTCCAGAGAAGGGGAACCCGAGGGAGGGATCCGGGTTCTGGAGCCCGGGTGCTGGAGTCCGGGTGTTGGATCCCGAGTTCTGGAAGCCGGGACCTTGGTCTGCAGGAGCTGGAACCTTGAGCTAGAGGTCCAGATGGATCCGGATCAGGATTTAGAGCAAGAAGCATACAATGAAGAAGGAATTGAATCAGGAGCAAGATCAAATGCTGGTGGAGGATCTAGAAATGAGCGTGGAGCTCTGAAGAAATCTGCAGTGAAATTCCAGATAATTTTTTCAATTCCTGGAACTGAAATCAGATAATTCATACTACGAGATGGTTCACGTGAAATATGATTCTTTGGAGCGTTGATGGTTCAGACTGAAAACAGTAAGAAATTAATTGATTGATCTGGGATCCTGGATTCAGGGAACAGGAGTCTGAGTTCAGAGGAGCTGGGGCTGACACCAAAAGCGAGGTGCATATAACCGAGGAGGAACTGGATCAGGAACCAGAAGCA</canonical>
            <polymorphic>TCATTCTCAATGAAGATGTTTCTTTATCAGACTATCATGATGGTACTTATTTTTGATACCGTACATTATTGATCTAATAGGATCTCACCCTTGCGTGCATTTCGAGCTCAGTTATCTCGGTTCTTGCAAAAGGCATCAAATAGTAGTCAACTGACAAAGTATTTTCTATGTTATAATTAATCTGTTGTCAGTTGACAGAAACCTTTAATTAGTTGAAATTTTGTTGATAGCTCAACCAGGAAACGAATTCAGGTCAAAGTGATAGTCGTTTTAAGGAGTTTCACAGATTTCAAAAAAAATCAAGTGTTATTAAAACGTAATGAAAAATTACTTATTCATTTTTTTAAAAATCCGCGGGGCAAAAAAATTTCAAAAAATTTCAATACTCCGCCAAAAATTCGACGTAAAAAATCCACGACCCTCGATGTCCCATTGACTCCGGGAAGAATACTATAAAGGAAGAGGGAAATGGAGGGAAGAATCAGTTCTCCCCTTCTCCKGGCTCCAGAGAAGGGGAACCCGAGGGAGGGATCCGGGTTCTGGAGCCCGGGTGCTGGAGTCCGGGTGTTGGATCCCGAGTTCTGGAAGCCGGGACCTTGGTCTGCAGGAGCTGGAACCTTGAGCTAGAGGTCCAGATGGATCCGGATCAGGATTTAGAGCAAGAAGCATACAATGAAGAAGGAATTGAATCAGGAGCAAGATCAAATGCTGGTGGAGGATCTAGAAATGAGCGTGGAGCTCTGAAGAAATCTGCAGTGAAATTCCAGATAATTTTTTCAATTCCTGGAACTGAAATCAGATAATTCATACTACGAGATGGTTCACGTGAAATATGATTCTTTGGAGCGTTGATGGTTCAGACTGAAAACAGTAAGAAATTAATTGATTGATCTGGGATCCTGGATTCAGGGAACAGGAGTCTGAGTTCAGAGGAGCTGGGGCTGACACCAAAAGCGAGGTGCATATAACCGAGGAGGAACTGGATCAGGAACCAGAAGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>440 410 59 35 28 15 13</canonical_bands>
                <polymorphic_bands>440 410 94 28 15 13</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>396 260 193 108 43</canonical_bands>
                <polymorphic_bands>439 260 193 108</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>396 260 193 108 43</canonical_bands>
                <polymorphic_bands>439 260 193 108</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>497 419 14 14 14 14 14 14</canonical_bands>
                <polymorphic_bands>498 419 14 14 14 14 14 13</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>439 358 59 53 35 28 14 14</canonical_bands>
                <polymorphic_bands>439 358 94 53 28 14 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTCCGGGAAGAATACTATAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGTATGCTTCTTGCTCTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GACTCCGGGAAGAATACTATAAAGGAAGAGGGAAATGGAGGGAAGAATCAGTTCTCCCCTTCTCCGGGCTCCAGAGAAGGGGAACCCGAGGGAGGGATCCGGGTTCTGGAGCCCGGGTGCTGGAGTCCGGGTGTTGGATCCCGAGTTCTGGAAGCCGGGACCTTGGTCTGCAGGAGCTGGAACCTTGAGCTAGAGGTCCAGATGGATCCGGATCAGGATTTAGAGCAAGAAGCATACAAT</canonical_amplicon>
		<polymorphic_amplicon>GACTCCGGGAAGAATACTATAAAGGAAGAGGGAAATGGAGGGAAGAATCAGTTCTCCCCTTCTCCKGGCTCCAGAGAAGGGGAACCCGAGGGAGGGATCCGGGTTCTGGAGCCCGGGTGCTGGAGTCCGGGTGTTGGATCCCGAGTTCTGGAAGCCGGGACCTTGGTCTGCAGGAGCTGGAACCTTGAGCTAGAGGTCCAGATGGATCCGGATCAGGATTTAGAGCAAGAAGCATACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23660</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>124769</contig_pos>
        <strand>+</strand>
        <context>TTGGATCCCG[A/G]GTTCTGGAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGATCCGGGTTCTGGAGCCCGGGTGCTGGAGTCCGGGTGTTGGATCCCG</left_flank>
        <right_flank>GTTCTGGAAGCCGGGACCTTGGTCTGCAGGAGCTGGAACCTTGAGCTAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGATCTCACCCTTGCGTGCATTTCGAGCTCAGTTATCTCGGTTCTTGCAAAAGGCATCAAATAGTAGTCAACTGACAAAGTATTTTCTATGTTATAATTAATCTGTTGTCAGTTGACAGAAACCTTTAATTAGTTGAAATTTTGTTGATAGCTCAACCAGGAAACGAATTCAGGTCAAAGTGATAGTCGTTTTAAGGAGTTTCACAGATTTCAAAAAAAATCAAGTGTTATTAAAACGTAATGAAAAATTACTTATTCATTTTTTTAAAAATCCGCGGGGCAAAAAAATTTCAAAAAATTTCAATACTCCGCCAAAAATTCGACGTAAAAAATCCACGACCCTCGATGTCCCATTGACTCCGGGAAGAATACTATAAAGGAAGAGGGAAATGGAGGGAAGAATCAGTTCTCCCCTTCTCCGGGCTCCAGAGAAGGGGAACCCGAGGGAGGGATCCGGGTTCTGGAGCCCGGGTGCTGGAGTCCGGGTGTTGGATCCCGAGTTCTGGAAGCCGGGACCTTGGTCTGCAGGAGCTGGAACCTTGAGCTAGAGGTCCAGATGGATCCGGATCAGGATTTAGAGCAAGAAGCATACAATGAAGAAGGAATTGAATCAGGAGCAAGATCAAATGCTGGTGGAGGATCTAGAAATGAGCGTGGAGCTCTGAAGAAATCTGCAGTGAAATTCCAGATAATTTTTTCAATTCCTGGAACTGAAATCAGATAATTCATACTACGAGATGGTTCACGTGAAATATGATTCTTTGGAGCGTTGATGGTTCAGACTGAAAACAGTAAGAAATTAATTGATTGATCTGGGATCCTGGATTCAGGGAACAGGAGTCTGAGTTCAGAGGAGCTGGGGCTGACACCAAAAGCGAGGTGCATATAACCGAGGAGGAACTGGATCAGGAACCAGAAGCAATGCTGGTGGACGATCTAGAAATTCGTGTGATGTTCAAAGTAACTTCCTGGAACCTGGAACTGAATTCGGAGCGTTTC</canonical>
            <polymorphic>AGGATCTCACCCTTGCGTGCATTTCGAGCTCAGTTATCTCGGTTCTTGCAAAAGGCATCAAATAGTAGTCAACTGACAAAGTATTTTCTATGTTATAATTAATCTGTTGTCAGTTGACAGAAACCTTTAATTAGTTGAAATTTTGTTGATAGCTCAACCAGGAAACGAATTCAGGTCAAAGTGATAGTCGTTTTAAGGAGTTTCACAGATTTCAAAAAAAATCAAGTGTTATTAAAACGTAATGAAAAATTACTTATTCATTTTTTTAAAAATCCGCGGGGCAAAAAAATTTCAAAAAATTTCAATACTCCGCCAAAAATTCGACGTAAAAAATCCACGACCCTCGATGTCCCATTGACTCCGGGAAGAATACTATAAAGGAAGAGGGAAATGGAGGGAAGAATCAGTTCTCCCCTTCTCCGGGCTCCAGAGAAGGGGAACCCGAGGGAGGGATCCGGGTTCTGGAGCCCGGGTGCTGGAGTCCGGGTGTTGGATCCCGRGTTCTGGAAGCCGGGACCTTGGTCTGCAGGAGCTGGAACCTTGAGCTAGAGGTCCAGATGGATCCGGATCAGGATTTAGAGCAAGAAGCATACAATGAAGAAGGAATTGAATCAGGAGCAAGATCAAATGCTGGTGGAGGATCTAGAAATGAGCGTGGAGCTCTGAAGAAATCTGCAGTGAAATTCCAGATAATTTTTTCAATTCCTGGAACTGAAATCAGATAATTCATACTACGAGATGGTTCACGTGAAATATGATTCTTTGGAGCGTTGATGGTTCAGACTGAAAACAGTAAGAAATTAATTGATTGATCTGGGATCCTGGATTCAGGGAACAGGAGTCTGAGTTCAGAGGAGCTGGGGCTGACACCAAAAGCGAGGTGCATATAACCGAGGAGGAACTGGATCAGGAACCAGAAGCAATGCTGGTGGACGATCTAGAAATTCGTGTGATGTTCAAAGTAACTTCCTGGAACCTGGAACTGAATTCGGAGCGTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 441 28 27</canonical_bands>
                <polymorphic_bands>532 441 27</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>427 222 62 50 43 43 35 34 30 30 10 8 6</canonical_bands>
                <polymorphic_bands>427 222 62 50 43 43 42 35 30 30 10 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTCCGGGAAGAATACTATAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGTATGCTTCTTGCTCTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GACTCCGGGAAGAATACTATAAAGGAAGAGGGAAATGGAGGGAAGAATCAGTTCTCCCCTTCTCCGGGCTCCAGAGAAGGGGAACCCGAGGGAGGGATCCGGGTTCTGGAGCCCGGGTGCTGGAGTCCGGGTGTTGGATCCCGAGTTCTGGAAGCCGGGACCTTGGTCTGCAGGAGCTGGAACCTTGAGCTAGAGGTCCAGATGGATCCGGATCAGGATTTAGAGCAAGAAGCATACAAT</canonical_amplicon>
		<polymorphic_amplicon>GACTCCGGGAAGAATACTATAAAGGAAGAGGGAAATGGAGGGAAGAATCAGTTCTCCCCTTCTCCGGGCTCCAGAGAAGGGGAACCCGAGGGAGGGATCCGGGTTCTGGAGCCCGGGTGCTGGAGTCCGGGTGTTGGATCCCGRGTTCTGGAAGCCGGGACCTTGGTCTGCAGGAGCTGGAACCTTGAGCTAGAGGTCCAGATGGATCCGGATCAGGATTTAGAGCAAGAAGCATACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23661</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>127312</contig_pos>
        <strand></strand>
        <context>tgggactttc[A/G]gacacggcca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAAAAAATATAAATTTTAGGTTTCGGTAGATGTTGCTGTGGGACTTTC</left_flank>
        <right_flank>GACACGGCCACCGGCGTTTCTCTTATACAGTTCCGATTTTTGTACCGGAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCCTAATGTATAGTTCAATAAACATTTTTGACCAAATGAATATTCATAGAAATAAAAAGATTATATCAGATAAATGGTTTCAGCGGAGAGCTTTGAAGAGATCCAAACCCTGGATGCCAGGAGATCGCTTCAAAAAAAAATGTACAACAATTGGGGAGGAAAACTGAGAAAAAATTATTTGCATTTGATATTATAAAATCGGCCACTCGAATATGTCATGATGATCAAAACGGGATTGTGTAGGAGCAAAAAAATTGAGAGATTTTTAGAGTCGAAAAATACTGTATTATTCTGGTTTAAAAAATCAGAGCTGTGGAACATGACCGAAGTTCCCACAACAACAACTATCGTAACCTAGATTTTTTTTTCAATTTTCCGGATTTTCATTTTGTCTTTCTTGAAAAAAATAACAGAAAACTCGACGAAGAGCAGTAAAAATCGAGAAAAATTCAAAAAATATAAATTTTAGGTTTCGGTAGATGTTGCTGTGGGACTTTCAGACACGGCCACCGGCGTTTCTCTTATACAGTTCCGATTTTTGTACCGGAATAATACTTTTCAACCGAAGTATGCAGTATGAATACAAAATGTACAAAATGTTGTTACGCGGAGATTTTGATATGGTCATATATGGAAATTTAGCTTTTTTTCGCCAATTTCTCTACGCTATTTTGGCTTTACAAGTTGGAATGTACAATGTGGTTTCTGATAAGAAAATGATTAACAGACACATGTTTTGGGTCATAAAATGCGTAGCTCAATTCAATGAATTTGGGATGAATGGTGGCATCTAGTCGTTTTCTGAATTCTCTTCGTCATCCATATCGACGTCATCAACGTCATTATTCGCAGCCACGTCGTCACTATCGCTATACTCTTCTTCGGATTGCTCATCTTCTTCTTGCTCCTCCTCTTCCATCACCTCATCATTTTCTCTTCCTGCTTGATATTCAACAACTGGTTCATCTCCTTCTATTTCTTCGTCATCCTCTTCGTCGC</canonical>
            <polymorphic>GGCCTAATGTATAGTTCAATAAACATTTTTGACCAAATGAATATTCATAGAAATAAAAAGATTATATCAGATAAATGGTTTCAGCGGAGAGCTTTGAAGAGATCCAAACCCTGGATGCCAGGAGATCGCTTCAAAAAAAAATGTACAACAATTGGGGAGGAAAACTGAGAAAAAATTATTTGCATTTGATATTATAAAATCGGCCACTCGAATATGTCATGATGATCAAAACGGGATTGTGTAGGAGCAAAAAAATTGAGAGATTTTTAGAGTCGAAAAATACTGTATTATTCTGGTTTAAAAAATCAGAGCTGTGGAACATGACCGAAGTTCCCACAACAACAACTATCGTAACCTAGATTTTTTTTTCAATTTTCCGGATTTTCATTTTGTCTTTCTTGAAAAAAATAACAGAAAACTCGACGAAGAGCAGTAAAAATCGAGAAAAATTCAAAAAATATAAATTTTAGGTTTCGGTAGATGTTGCTGTGGGACTTTCRGACACGGCCACCGGCGTTTCTCTTATACAGTTCCGATTTTTGTACCGGAATAATACTTTTCAACCGAAGTATGCAGTATGAATACAAAATGTACAAAATGTTGTTACGCGGAGATTTTGATATGGTCATATATGGAAATTTAGCTTTTTTTCGCCAATTTCTCTACGCTATTTTGGCTTTACAAGTTGGAATGTACAATGTGGTTTCTGATAAGAAAATGATTAACAGACACATGTTTTGGGTCATAAAATGCGTAGCTCAATTCAATGAATTTGGGATGAATGGTGGCATCTAGTCGTTTTCTGAATTCTCTTCGTCATCCATATCGACGTCATCAACGTCATTATTCGCAGCCACGTCGTCACTATCGCTATACTCTTCTTCGGATTGCTCATCTTCTTCTTGCTCCTCCTCTTCCATCACCTCATCATTTTCTCTTCCTGCTTGATATTCAACAACTGGTTCATCTCCTTCTATTTCTTCGTCATCCTCTTCGTCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTGTGTAGGAGCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACAACATTTTGTACATTTTGTATTC</pcr_primer_p2>
		<pcr_amplicon_size>371</pcr_amplicon_size>
		<canonical_amplicon>GGATTGTGTAGGAGCAAAAAAATTGAGAGATTTTTAGAGTCGAAAAATACTGTATTATTCTGGTTTAAAAAATCAGAGCTGTGGAACATGACCGAAGTTCCCACAACAACAACTATCGTAACCTAGATTTTTTTTTCAATTTTCCGGATTTTCATTTTGTCTTTCTTGAAAAAAATAACAGAAAACTCGACGAAGAGCAGTAAAAATCGAGAAAAATTCAAAAAATATAAATTTTAGGTTTCGGTAGATGTTGCTGTGGGACTTTCAGACACGGCCACCGGCGTTTCTCTTATACAGTTCCGATTTTTGTACCGGAATAATACTTTTCAACCGAAGTATGCAGTATGAATACAAAATGTACAAAATGTTGT</canonical_amplicon>
		<polymorphic_amplicon>GGATTGTGTAGGAGCAAAAAAATTGAGAGATTTTTAGAGTCGAAAAATACTGTATTATTCTGGTTTAAAAAATCAGAGCTGTGGAACATGACCGAAGTTCCCACAACAACAACTATCGTAACCTAGATTTTTTTTTCAATTTTCCGGATTTTCATTTTGTCTTTCTTGAAAAAAATAACAGAAAACTCGACGAAGAGCAGTAAAAATCGAGAAAAATTCAAAAAATATAAATTTTAGGTTTCGGTAGATGTTGCTGTGGGACTTTCRGACACGGCCACCGGCGTTTCTCTTATACAGTTCCGATTTTTGTACCGGAATAATACTTTTCAACCGAAGTATGCAGTATGAATACAAAATGTACAAAATGTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23662</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>127337</contig_pos>
        <strand></strand>
        <context>cgtttctctt[A/C]tacagttccg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGGTAGATGTTGCTGTGGGACTTTCAGACACGGCCACCGGCGTTTCTCTT</left_flank>
        <right_flank>TACAGTTCCGATTTTTGTACCGGAATAATACTTTTCAACCGAAGTATGCA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGACCAAATGAATATTCATAGAAATAAAAAGATTATATCAGATAAATGGTTTCAGCGGAGAGCTTTGAAGAGATCCAAACCCTGGATGCCAGGAGATCGCTTCAAAAAAAAATGTACAACAATTGGGGAGGAAAACTGAGAAAAAATTATTTGCATTTGATATTATAAAATCGGCCACTCGAATATGTCATGATGATCAAAACGGGATTGTGTAGGAGCAAAAAAATTGAGAGATTTTTAGAGTCGAAAAATACTGTATTATTCTGGTTTAAAAAATCAGAGCTGTGGAACATGACCGAAGTTCCCACAACAACAACTATCGTAACCTAGATTTTTTTTTCAATTTTCCGGATTTTCATTTTGTCTTTCTTGAAAAAAATAACAGAAAACTCGACGAAGAGCAGTAAAAATCGAGAAAAATTCAAAAAATATAAATTTTAGGTTTCGGTAGATGTTGCTGTGGGACTTTCAGACACGGCCACCGGCGTTTCTCTTATACAGTTCCGATTTTTGTACCGGAATAATACTTTTCAACCGAAGTATGCAGTATGAATACAAAATGTACAAAATGTTGTTACGCGGAGATTTTGATATGGTCATATATGGAAATTTAGCTTTTTTTCGCCAATTTCTCTACGCTATTTTGGCTTTACAAGTTGGAATGTACAATGTGGTTTCTGATAAGAAAATGATTAACAGACACATGTTTTGGGTCATAAAATGCGTAGCTCAATTCAATGAATTTGGGATGAATGGTGGCATCTAGTCGTTTTCTGAATTCTCTTCGTCATCCATATCGACGTCATCAACGTCATTATTCGCAGCCACGTCGTCACTATCGCTATACTCTTCTTCGGATTGCTCATCTTCTTCTTGCTCCTCCTCTTCCATCACCTCATCATTTTCTCTTCCTGCTTGATATTCAACAACTGGTTCATCTCCTTCTATTTCTTCGTCATCCTCTTCGTCGCTACTCTCATGTCGATGATGCTCCAT</canonical>
            <polymorphic>TTTTTGACCAAATGAATATTCATAGAAATAAAAAGATTATATCAGATAAATGGTTTCAGCGGAGAGCTTTGAAGAGATCCAAACCCTGGATGCCAGGAGATCGCTTCAAAAAAAAATGTACAACAATTGGGGAGGAAAACTGAGAAAAAATTATTTGCATTTGATATTATAAAATCGGCCACTCGAATATGTCATGATGATCAAAACGGGATTGTGTAGGAGCAAAAAAATTGAGAGATTTTTAGAGTCGAAAAATACTGTATTATTCTGGTTTAAAAAATCAGAGCTGTGGAACATGACCGAAGTTCCCACAACAACAACTATCGTAACCTAGATTTTTTTTTCAATTTTCCGGATTTTCATTTTGTCTTTCTTGAAAAAAATAACAGAAAACTCGACGAAGAGCAGTAAAAATCGAGAAAAATTCAAAAAATATAAATTTTAGGTTTCGGTAGATGTTGCTGTGGGACTTTCAGACACGGCCACCGGCGTTTCTCTTMTACAGTTCCGATTTTTGTACCGGAATAATACTTTTCAACCGAAGTATGCAGTATGAATACAAAATGTACAAAATGTTGTTACGCGGAGATTTTGATATGGTCATATATGGAAATTTAGCTTTTTTTCGCCAATTTCTCTACGCTATTTTGGCTTTACAAGTTGGAATGTACAATGTGGTTTCTGATAAGAAAATGATTAACAGACACATGTTTTGGGTCATAAAATGCGTAGCTCAATTCAATGAATTTGGGATGAATGGTGGCATCTAGTCGTTTTCTGAATTCTCTTCGTCATCCATATCGACGTCATCAACGTCATTATTCGCAGCCACGTCGTCACTATCGCTATACTCTTCTTCGGATTGCTCATCTTCTTCTTGCTCCTCCTCTTCCATCACCTCATCATTTTCTCTTCCTGCTTGATATTCAACAACTGGTTCATCTCCTTCTATTTCTTCGTCATCCTCTTCGTCGCTACTCTCATGTCGATGATGCTCCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTGTGTAGGAGCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACAACATTTTGTACATTTTGTATTC</pcr_primer_p2>
		<pcr_amplicon_size>371</pcr_amplicon_size>
		<canonical_amplicon>GGATTGTGTAGGAGCAAAAAAATTGAGAGATTTTTAGAGTCGAAAAATACTGTATTATTCTGGTTTAAAAAATCAGAGCTGTGGAACATGACCGAAGTTCCCACAACAACAACTATCGTAACCTAGATTTTTTTTTCAATTTTCCGGATTTTCATTTTGTCTTTCTTGAAAAAAATAACAGAAAACTCGACGAAGAGCAGTAAAAATCGAGAAAAATTCAAAAAATATAAATTTTAGGTTTCGGTAGATGTTGCTGTGGGACTTTCAGACACGGCCACCGGCGTTTCTCTTATACAGTTCCGATTTTTGTACCGGAATAATACTTTTCAACCGAAGTATGCAGTATGAATACAAAATGTACAAAATGTTGT</canonical_amplicon>
		<polymorphic_amplicon>GGATTGTGTAGGAGCAAAAAAATTGAGAGATTTTTAGAGTCGAAAAATACTGTATTATTCTGGTTTAAAAAATCAGAGCTGTGGAACATGACCGAAGTTCCCACAACAACAACTATCGTAACCTAGATTTTTTTTTCAATTTTCCGGATTTTCATTTTGTCTTTCTTGAAAAAAATAACAGAAAACTCGACGAAGAGCAGTAAAAATCGAGAAAAATTCAAAAAATATAAATTTTAGGTTTCGGTAGATGTTGCTGTGGGACTTTCAGACACGGCCACCGGCGTTTCTCTTMTACAGTTCCGATTTTTGTACCGGAATAATACTTTTCAACCGAAGTATGCAGTATGAATACAAAATGTACAAAATGTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23663</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>127372</contig_pos>
        <strand>+</strand>
        <context>ataatACTTT[C/T]CAACCGAAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCGGCGTTTCTCTTATACAGTTCCGATTTTTGTACCGGAATAATACTTT</left_flank>
        <right_flank>CAACCGAAGTATGCAGTATGAATACAAAATGTACAAAATGTTGTTACGCG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATATCAGATAAATGGTTTCAGCGGAGAGCTTTGAAGAGATCCAAACCCTGGATGCCAGGAGATCGCTTCAAAAAAAAATGTACAACAATTGGGGAGGAAAACTGAGAAAAAATTATTTGCATTTGATATTATAAAATCGGCCACTCGAATATGTCATGATGATCAAAACGGGATTGTGTAGGAGCAAAAAAATTGAGAGATTTTTAGAGTCGAAAAATACTGTATTATTCTGGTTTAAAAAATCAGAGCTGTGGAACATGACCGAAGTTCCCACAACAACAACTATCGTAACCTAGATTTTTTTTTCAATTTTCCGGATTTTCATTTTGTCTTTCTTGAAAAAAATAACAGAAAACTCGACGAAGAGCAGTAAAAATCGAGAAAAATTCAAAAAATATAAATTTTAGGTTTCGGTAGATGTTGCTGTGGGACTTTCAGACACGGCCACCGGCGTTTCTCTTATACAGTTCCGATTTTTGTACCGGAATAATACTTTTCAACCGAAGTATGCAGTATGAATACAAAATGTACAAAATGTTGTTACGCGGAGATTTTGATATGGTCATATATGGAAATTTAGCTTTTTTTCGCCAATTTCTCTACGCTATTTTGGCTTTACAAGTTGGAATGTACAATGTGGTTTCTGATAAGAAAATGATTAACAGACACATGTTTTGGGTCATAAAATGCGTAGCTCAATTCAATGAATTTGGGATGAATGGTGGCATCTAGTCGTTTTCTGAATTCTCTTCGTCATCCATATCGACGTCATCAACGTCATTATTCGCAGCCACGTCGTCACTATCGCTATACTCTTCTTCGGATTGCTCATCTTCTTCTTGCTCCTCCTCTTCCATCACCTCATCATTTTCTCTTCCTGCTTGATATTCAACAACTGGTTCATCTCCTTCTATTTCTTCGTCATCCTCTTCGTCGCTACTCTCATGTCGATGATGCTCCATTATATGATCGAATAATCGATGTAGAGGGTCATTTT</canonical>
            <polymorphic>ATTATATCAGATAAATGGTTTCAGCGGAGAGCTTTGAAGAGATCCAAACCCTGGATGCCAGGAGATCGCTTCAAAAAAAAATGTACAACAATTGGGGAGGAAAACTGAGAAAAAATTATTTGCATTTGATATTATAAAATCGGCCACTCGAATATGTCATGATGATCAAAACGGGATTGTGTAGGAGCAAAAAAATTGAGAGATTTTTAGAGTCGAAAAATACTGTATTATTCTGGTTTAAAAAATCAGAGCTGTGGAACATGACCGAAGTTCCCACAACAACAACTATCGTAACCTAGATTTTTTTTTCAATTTTCCGGATTTTCATTTTGTCTTTCTTGAAAAAAATAACAGAAAACTCGACGAAGAGCAGTAAAAATCGAGAAAAATTCAAAAAATATAAATTTTAGGTTTCGGTAGATGTTGCTGTGGGACTTTCAGACACGGCCACCGGCGTTTCTCTTATACAGTTCCGATTTTTGTACCGGAATAATACTTTYCAACCGAAGTATGCAGTATGAATACAAAATGTACAAAATGTTGTTACGCGGAGATTTTGATATGGTCATATATGGAAATTTAGCTTTTTTTCGCCAATTTCTCTACGCTATTTTGGCTTTACAAGTTGGAATGTACAATGTGGTTTCTGATAAGAAAATGATTAACAGACACATGTTTTGGGTCATAAAATGCGTAGCTCAATTCAATGAATTTGGGATGAATGGTGGCATCTAGTCGTTTTCTGAATTCTCTTCGTCATCCATATCGACGTCATCAACGTCATTATTCGCAGCCACGTCGTCACTATCGCTATACTCTTCTTCGGATTGCTCATCTTCTTCTTGCTCCTCCTCTTCCATCACCTCATCATTTTCTCTTCCTGCTTGATATTCAACAACTGGTTCATCTCCTTCTATTTCTTCGTCATCCTCTTCGTCGCTACTCTCATGTCGATGATGCTCCATTATATGATCGAATAATCGATGTAGAGGGTCATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTGTGTAGGAGCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TATCAAAATCTCCGCGTAAC</pcr_primer_p2>
		<pcr_amplicon_size>389</pcr_amplicon_size>
		<canonical_amplicon>GGATTGTGTAGGAGCAAAAAAATTGAGAGATTTTTAGAGTCGAAAAATACTGTATTATTCTGGTTTAAAAAATCAGAGCTGTGGAACATGACCGAAGTTCCCACAACAACAACTATCGTAACCTAGATTTTTTTTTCAATTTTCCGGATTTTCATTTTGTCTTTCTTGAAAAAAATAACAGAAAACTCGACGAAGAGCAGTAAAAATCGAGAAAAATTCAAAAAATATAAATTTTAGGTTTCGGTAGATGTTGCTGTGGGACTTTCAGACACGGCCACCGGCGTTTCTCTTATACAGTTCCGATTTTTGTACCGGAATAATACTTTTCAACCGAAGTATGCAGTATGAATACAAAATGTACAAAATGTTGTTACGCGGAGATTTTGATA</canonical_amplicon>
		<polymorphic_amplicon>GGATTGTGTAGGAGCAAAAAAATTGAGAGATTTTTAGAGTCGAAAAATACTGTATTATTCTGGTTTAAAAAATCAGAGCTGTGGAACATGACCGAAGTTCCCACAACAACAACTATCGTAACCTAGATTTTTTTTTCAATTTTCCGGATTTTCATTTTGTCTTTCTTGAAAAAAATAACAGAAAACTCGACGAAGAGCAGTAAAAATCGAGAAAAATTCAAAAAATATAAATTTTAGGTTTCGGTAGATGTTGCTGTGGGACTTTCAGACACGGCCACCGGCGTTTCTCTTATACAGTTCCGATTTTTGTACCGGAATAATACTTTYCAACCGAAGTATGCAGTATGAATACAAAATGTACAAAATGTTGTTACGCGGAGATTTTGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23664</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>127522</contig_pos>
        <strand>+</strand>
        <context>GTGGTTTCTG[A/G]TAAGAAAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTCTACGCTATTTTGGCTTTACAAGTTGGAATGTACAATGTGGTTTCTG</left_flank>
        <right_flank>TAAGAAAATGATTAACAGACACATGTTTTGGGTCATAAAATGCGTAGCTC</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATATGTCATGATGATCAAAACGGGATTGTGTAGGAGCAAAAAAATTGAGAGATTTTTAGAGTCGAAAAATACTGTATTATTCTGGTTTAAAAAATCAGAGCTGTGGAACATGACCGAAGTTCCCACAACAACAACTATCGTAACCTAGATTTTTTTTTCAATTTTCCGGATTTTCATTTTGTCTTTCTTGAAAAAAATAACAGAAAACTCGACGAAGAGCAGTAAAAATCGAGAAAAATTCAAAAAATATAAATTTTAGGTTTCGGTAGATGTTGCTGTGGGACTTTCAGACACGGCCACCGGCGTTTCTCTTATACAGTTCCGATTTTTGTACCGGAATAATACTTTTCAACCGAAGTATGCAGTATGAATACAAAATGTACAAAATGTTGTTACGCGGAGATTTTGATATGGTCATATATGGAAATTTAGCTTTTTTTCGCCAATTTCTCTACGCTATTTTGGCTTTACAAGTTGGAATGTACAATGTGGTTTCTGATAAGAAAATGATTAACAGACACATGTTTTGGGTCATAAAATGCGTAGCTCAATTCAATGAATTTGGGATGAATGGTGGCATCTAGTCGTTTTCTGAATTCTCTTCGTCATCCATATCGACGTCATCAACGTCATTATTCGCAGCCACGTCGTCACTATCGCTATACTCTTCTTCGGATTGCTCATCTTCTTCTTGCTCCTCCTCTTCCATCACCTCATCATTTTCTCTTCCTGCTTGATATTCAACAACTGGTTCATCTCCTTCTATTTCTTCGTCATCCTCTTCGTCGCTACTCTCATGTCGATGATGCTCCATTATATGATCGAATAATCGATGTAGAGGGTCATTTTCATCAAGATCAGAATCCGAATCATGATCGAACCAATCTCTGCGTAACGGTGGAATCACTCGTCTTCGTGCCGCTTCGATTCTCATTCTTCGTCTCTCCTCCTCGATCTCGTCATCGTCATATTCTCTGTCCGAGTCACTGTCATTCATAG</canonical>
            <polymorphic>AATATGTCATGATGATCAAAACGGGATTGTGTAGGAGCAAAAAAATTGAGAGATTTTTAGAGTCGAAAAATACTGTATTATTCTGGTTTAAAAAATCAGAGCTGTGGAACATGACCGAAGTTCCCACAACAACAACTATCGTAACCTAGATTTTTTTTTCAATTTTCCGGATTTTCATTTTGTCTTTCTTGAAAAAAATAACAGAAAACTCGACGAAGAGCAGTAAAAATCGAGAAAAATTCAAAAAATATAAATTTTAGGTTTCGGTAGATGTTGCTGTGGGACTTTCAGACACGGCCACCGGCGTTTCTCTTATACAGTTCCGATTTTTGTACCGGAATAATACTTTTCAACCGAAGTATGCAGTATGAATACAAAATGTACAAAATGTTGTTACGCGGAGATTTTGATATGGTCATATATGGAAATTTAGCTTTTTTTCGCCAATTTCTCTACGCTATTTTGGCTTTACAAGTTGGAATGTACAATGTGGTTTCTGRTAAGAAAATGATTAACAGACACATGTTTTGGGTCATAAAATGCGTAGCTCAATTCAATGAATTTGGGATGAATGGTGGCATCTAGTCGTTTTCTGAATTCTCTTCGTCATCCATATCGACGTCATCAACGTCATTATTCGCAGCCACGTCGTCACTATCGCTATACTCTTCTTCGGATTGCTCATCTTCTTCTTGCTCCTCCTCTTCCATCACCTCATCATTTTCTCTTCCTGCTTGATATTCAACAACTGGTTCATCTCCTTCTATTTCTTCGTCATCCTCTTCGTCGCTACTCTCATGTCGATGATGCTCCATTATATGATCGAATAATCGATGTAGAGGGTCATTTTCATCAAGATCAGAATCCGAATCATGATCGAACCAATCTCTGCGTAACGGTGGAATCACTCGTCTTCGTGCCGCTTCGATTCTCATTCTTCGTCTCTCCTCCTCGATCTCGTCATCGTCATATTCTCTGTCCGAGTCACTGTCATTCATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>192 186 174 114 98 96 81 34 19 6</canonical_bands>
                <polymorphic_bands>270 192 186 114 98 81 34 19 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAGTATGAATACAAAATGTACAAA</pcr_primer_p1>
		<pcr_primer_p2>GGATGACGAAGAGAATTCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCAGTATGAATACAAAATGTACAAAATGTTGTTACGCGGAGATTTTGATATGGTCATATATGGAAATTTAGCTTTTTTTCGCCAATTTCTCTACGCTATTTTGGCTTTACAAGTTGGAATGTACAATGTGGTTTCTGATAAGAAAATGATTAACAGACACATGTTTTGGGTCATAAAATGCGTAGCTCAATTCAATGAATTTGGGATGAATGGTGGCATCTAGTCGTTTTCTGAATTCTCTTCGTCATCC</canonical_amplicon>
		<polymorphic_amplicon>GCAGTATGAATACAAAATGTACAAAATGTTGTTACGCGGAGATTTTGATATGGTCATATATGGAAATTTAGCTTTTTTTCGCCAATTTCTCTACGCTATTTTGGCTTTACAAGTTGGAATGTACAATGTGGTTTCTGRTAAGAAAATGATTAACAGACACATGTTTTGGGTCATAAAATGCGTAGCTCAATTCAATGAATTTGGGATGAATGGTGGCATCTAGTCGTTTTCTGAATTCTCTTCGTCATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23665</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>127612</contig_pos>
        <strand>+</strand>
        <context>ATCTAGTCGT[C/T]TTCTGAATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGCGTAGCTCAATTCAATGAATTTGGGATGAATGGTGGCATCTAGTCGT</left_flank>
        <right_flank>TTCTGAATTCTCTTCGTCATCCATATCGACGTCATCAACGTCATTATTCG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATCAGAGCTGTGGAACATGACCGAAGTTCCCACAACAACAACTATCGTAACCTAGATTTTTTTTTCAATTTTCCGGATTTTCATTTTGTCTTTCTTGAAAAAAATAACAGAAAACTCGACGAAGAGCAGTAAAAATCGAGAAAAATTCAAAAAATATAAATTTTAGGTTTCGGTAGATGTTGCTGTGGGACTTTCAGACACGGCCACCGGCGTTTCTCTTATACAGTTCCGATTTTTGTACCGGAATAATACTTTTCAACCGAAGTATGCAGTATGAATACAAAATGTACAAAATGTTGTTACGCGGAGATTTTGATATGGTCATATATGGAAATTTAGCTTTTTTTCGCCAATTTCTCTACGCTATTTTGGCTTTACAAGTTGGAATGTACAATGTGGTTTCTGATAAGAAAATGATTAACAGACACATGTTTTGGGTCATAAAATGCGTAGCTCAATTCAATGAATTTGGGATGAATGGTGGCATCTAGTCGTTTTCTGAATTCTCTTCGTCATCCATATCGACGTCATCAACGTCATTATTCGCAGCCACGTCGTCACTATCGCTATACTCTTCTTCGGATTGCTCATCTTCTTCTTGCTCCTCCTCTTCCATCACCTCATCATTTTCTCTTCCTGCTTGATATTCAACAACTGGTTCATCTCCTTCTATTTCTTCGTCATCCTCTTCGTCGCTACTCTCATGTCGATGATGCTCCATTATATGATCGAATAATCGATGTAGAGGGTCATTTTCATCAAGATCAGAATCCGAATCATGATCGAACCAATCTCTGCGTAACGGTGGAATCACTCGTCTTCGTGCCGCTTCGATTCTCATTCTTCGTCTCTCCTCCTCGATCTCGTCATCGTCATATTCTCTGTCCGAGTCACTGTCATTCATAGCTGAAAATTTGAAAGGTTTATTAAGACAGCAGAGAATACATTTTATACCATTTTGTGCGTTCAATGCCCGAACAAGAACATCCTCTCCTT</canonical>
            <polymorphic>AAAAATCAGAGCTGTGGAACATGACCGAAGTTCCCACAACAACAACTATCGTAACCTAGATTTTTTTTTCAATTTTCCGGATTTTCATTTTGTCTTTCTTGAAAAAAATAACAGAAAACTCGACGAAGAGCAGTAAAAATCGAGAAAAATTCAAAAAATATAAATTTTAGGTTTCGGTAGATGTTGCTGTGGGACTTTCAGACACGGCCACCGGCGTTTCTCTTATACAGTTCCGATTTTTGTACCGGAATAATACTTTTCAACCGAAGTATGCAGTATGAATACAAAATGTACAAAATGTTGTTACGCGGAGATTTTGATATGGTCATATATGGAAATTTAGCTTTTTTTCGCCAATTTCTCTACGCTATTTTGGCTTTACAAGTTGGAATGTACAATGTGGTTTCTGATAAGAAAATGATTAACAGACACATGTTTTGGGTCATAAAATGCGTAGCTCAATTCAATGAATTTGGGATGAATGGTGGCATCTAGTCGTYTTCTGAATTCTCTTCGTCATCCATATCGACGTCATCAACGTCATTATTCGCAGCCACGTCGTCACTATCGCTATACTCTTCTTCGGATTGCTCATCTTCTTCTTGCTCCTCCTCTTCCATCACCTCATCATTTTCTCTTCCTGCTTGATATTCAACAACTGGTTCATCTCCTTCTATTTCTTCGTCATCCTCTTCGTCGCTACTCTCATGTCGATGATGCTCCATTATATGATCGAATAATCGATGTAGAGGGTCATTTTCATCAAGATCAGAATCCGAATCATGATCGAACCAATCTCTGCGTAACGGTGGAATCACTCGTCTTCGTGCCGCTTCGATTCTCATTCTTCGTCTCTCCTCCTCGATCTCGTCATCGTCATATTCTCTGTCCGAGTCACTGTCATTCATAGCTGAAAATTTGAAAGGTTTATTAAGACAGCAGAGAATACATTTTATACCATTTTGTGCGTTCAATGCCCGAACAAGAACATCCTCTCCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTACGCGGAGATTTTGATA</pcr_primer_p1>
		<pcr_primer_p2>CTGCGAATAATGACGTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTTACGCGGAGATTTTGATATGGTCATATATGGAAATTTAGCTTTTTTTCGCCAATTTCTCTACGCTATTTTGGCTTTACAAGTTGGAATGTACAATGTGGTTTCTGATAAGAAAATGATTAACAGACACATGTTTTGGGTCATAAAATGCGTAGCTCAATTCAATGAATTTGGGATGAATGGTGGCATCTAGTCGTTTTCTGAATTCTCTTCGTCATCCATATCGACGTCATCAACGTCATTATTCGCAG</canonical_amplicon>
		<polymorphic_amplicon>GTTACGCGGAGATTTTGATATGGTCATATATGGAAATTTAGCTTTTTTTCGCCAATTTCTCTACGCTATTTTGGCTTTACAAGTTGGAATGTACAATGTGGTTTCTGATAAGAAAATGATTAACAGACACATGTTTTGGGTCATAAAATGCGTAGCTCAATTCAATGAATTTGGGATGAATGGTGGCATCTAGTCGTYTTCTGAATTCTCTTCGTCATCCATATCGACGTCATCAACGTCATTATTCGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23666</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>127760</contig_pos>
        <strand>+</strand>
        <context>ttcctgcttg[A/G]tattcaacaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTCTTGCTCCTCCTCTTCCATCACCTCATCATTTTCTCTTCCTGCTTG</left_flank>
        <right_flank>TATTCAACAACTGGTTCATCTCCTTCTATTTCTTCGTCATCCTCTTCGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCAAAAAATATAAATTTTAGGTTTCGGTAGATGTTGCTGTGGGACTTTCAGACACGGCCACCGGCGTTTCTCTTATACAGTTCCGATTTTTGTACCGGAATAATACTTTTCAACCGAAGTATGCAGTATGAATACAAAATGTACAAAATGTTGTTACGCGGAGATTTTGATATGGTCATATATGGAAATTTAGCTTTTTTTCGCCAATTTCTCTACGCTATTTTGGCTTTACAAGTTGGAATGTACAATGTGGTTTCTGATAAGAAAATGATTAACAGACACATGTTTTGGGTCATAAAATGCGTAGCTCAATTCAATGAATTTGGGATGAATGGTGGCATCTAGTCGTTTTCTGAATTCTCTTCGTCATCCATATCGACGTCATCAACGTCATTATTCGCAGCCACGTCGTCACTATCGCTATACTCTTCTTCGGATTGCTCATCTTCTTCTTGCTCCTCCTCTTCCATCACCTCATCATTTTCTCTTCCTGCTTGATATTCAACAACTGGTTCATCTCCTTCTATTTCTTCGTCATCCTCTTCGTCGCTACTCTCATGTCGATGATGCTCCATTATATGATCGAATAATCGATGTAGAGGGTCATTTTCATCAAGATCAGAATCCGAATCATGATCGAACCAATCTCTGCGTAACGGTGGAATCACTCGTCTTCGTGCCGCTTCGATTCTCATTCTTCGTCTCTCCTCCTCGATCTCGTCATCGTCATATTCTCTGTCCGAGTCACTGTCATTCATAGCTGAAAATTTGAAAGGTTTATTAAGACAGCAGAGAATACATTTTATACCATTTTGTGCGTTCAATGCCCGAACAAGAACATCCTCTCCTTGATGCTGAAAATAACAATTGTGATCAATGAATTCGACAGGTTCATCACATACAACTAAAAACTCCAATCTTCCTCTTGGAAATCCTAGTTCCTGAAAAACGCGTGCTGCAAAATCCTCGCCATCAGATGACTCATCATCAACATCATC</canonical>
            <polymorphic>ATTCAAAAAATATAAATTTTAGGTTTCGGTAGATGTTGCTGTGGGACTTTCAGACACGGCCACCGGCGTTTCTCTTATACAGTTCCGATTTTTGTACCGGAATAATACTTTTCAACCGAAGTATGCAGTATGAATACAAAATGTACAAAATGTTGTTACGCGGAGATTTTGATATGGTCATATATGGAAATTTAGCTTTTTTTCGCCAATTTCTCTACGCTATTTTGGCTTTACAAGTTGGAATGTACAATGTGGTTTCTGATAAGAAAATGATTAACAGACACATGTTTTGGGTCATAAAATGCGTAGCTCAATTCAATGAATTTGGGATGAATGGTGGCATCTAGTCGTTTTCTGAATTCTCTTCGTCATCCATATCGACGTCATCAACGTCATTATTCGCAGCCACGTCGTCACTATCGCTATACTCTTCTTCGGATTGCTCATCTTCTTCTTGCTCCTCCTCTTCCATCACCTCATCATTTTCTCTTCCTGCTTGRTATTCAACAACTGGTTCATCTCCTTCTATTTCTTCGTCATCCTCTTCGTCGCTACTCTCATGTCGATGATGCTCCATTATATGATCGAATAATCGATGTAGAGGGTCATTTTCATCAAGATCAGAATCCGAATCATGATCGAACCAATCTCTGCGTAACGGTGGAATCACTCGTCTTCGTGCCGCTTCGATTCTCATTCTTCGTCTCTCCTCCTCGATCTCGTCATCGTCATATTCTCTGTCCGAGTCACTGTCATTCATAGCTGAAAATTTGAAAGGTTTATTAAGACAGCAGAGAATACATTTTATACCATTTTGTGCGTTCAATGCCCGAACAAGAACATCCTCTCCTTGATGCTGAAAATAACAATTGTGATCAATGAATTCGACAGGTTCATCACATACAACTAAAAACTCCAATCTTCCTCTTGGAAATCCTAGTTCCTGAAAAACGCGTGCTGCAAAATCCTCGCCATCAGATGACTCATCATCAACATCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCTCTTCGTCATCCATATC</pcr_primer_p1>
		<pcr_primer_p2>AATGACCCTCTACATCGATTATT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AATTCTCTTCGTCATCCATATCGACGTCATCAACGTCATTATTCGCAGCCACGTCGTCACTATCGCTATACTCTTCTTCGGATTGCTCATCTTCTTCTTGCTCCTCCTCTTCCATCACCTCATCATTTTCTCTTCCTGCTTGATATTCAACAACTGGTTCATCTCCTTCTATTTCTTCGTCATCCTCTTCGTCGCTACTCTCATGTCGATGATGCTCCATTATATGATCGAATAATCGATGTAGAGGGTCATT</canonical_amplicon>
		<polymorphic_amplicon>AATTCTCTTCGTCATCCATATCGACGTCATCAACGTCATTATTCGCAGCCACGTCGTCACTATCGCTATACTCTTCTTCGGATTGCTCATCTTCTTCTTGCTCCTCCTCTTCCATCACCTCATCATTTTCTCTTCCTGCTTGRTATTCAACAACTGGTTCATCTCCTTCTATTTCTTCGTCATCCTCTTCGTCGCTACTCTCATGTCGATGATGCTCCATTATATGATCGAATAATCGATGTAGAGGGTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23667</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>132916</contig_pos>
        <strand>+</strand>
        <context>GTAGCCCTTY[A/G]TTTTTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAGGTGGCTTTTCTTTGTGTATTGTTGTAGGAAAATGGAGTAGCCCTTT</left_flank>
        <right_flank>TTTTTTTTTGAGTTCACAAGGGAAACTCAACACCGTTTAAAGCCAGATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTATCAACATCATTTCTTCTCAACACAGAATATTTTCTAAAACTAGGTTAAATTTTGGACTGGAAAGAAACTTTGAAAGAGATGAAAGAAAAATGACAAATCTTAATATTTAAAGTCGCAATTCAAAACTGTGGAAGTGGACCACTCTGATGGCCGCCATCTACACATAAAAGTTCCTGAAGGCAATTGGTCCCATGAGAGTCGAAGAAAAAATAGGGAAGAGGGAAGCAAGCAGCTGAAGGGCTATTTATTATCTGTACGTGCATAAACTGCAATGTACTTGTGGTGGGGTTTTATGAATAGATATCATAGAACCGTAGGAAGAAGTCGAATTTCAAAAAAAAAACGGAATTTTCTTATTTCGTTTTTTGCTTCGAGATGGACTAATTGGAAAGGGGATCCCTTTTTCTGGGAAATTTTCGATTACAGGGGATGAGCTCCGTGTGATGGAGGTGGCTTTTCTTTGTGTATTGTTGTAGGAAAATGGAGTAGCCCTTTTTTTTTTTTTGAGTTCACAAGGGAAACTCAACACCGTTTAAAGCCAGATTATGATGAACATTACAGGATAGACTGAAACTAGTTTATCTGGAAAATTTCTAAAAATTTTAGAATCCTCTCGCCAGTTCCAGCCAAGGTATATCAGCTTCAGTCCTAAAAATTGCATTTTTGCGCTGAAATCGCGATTTTTGGTACCTAAACTATATATAACTCGGCTGGAACTGGTGAGCGGATTTTAAAATTTTCAGAGTTTTCTAGATAGACTATCCTCAATCTATACTGGAGGTTCCCTTGTTAGCTTGACATCTTATATGGTCTCCAAAACAATACATGACGAGAGAATTCGAAATGTAATGAGCAGAATACATTGTGGGCATAGCATAATTTTATAACTAATTGAAAGAATATGATGAGTAGCTAGCGAAATTTGAGAATGTTCCAGAATTCGAAATGATGAACTTTGCTGAAAGAGGTGTTAAAAATTTGAATGCAGCTAAAAGA</canonical>
            <polymorphic>GCTATCAACATCATTTCTTCTCAACACAGAATATTTTCTAAAACTAGGTTAAATTTTGGACTGGAAAGAAACTTTGAAAGAGATGAAAGAAAAATGACAAATCTTAATATTTAAAGTCGCAATTCAAAACTGTGGAAGTGGACCACTCTGATGGCCGCCATCTACACATAAAAGTTCCTGAAGGCAATTGGTCCCATGAGAGTCGAAGAAAAAATAGGGAAGAGGGAAGCAAGCAGCTGAAGGGCTATTTATTATCTGTACGTGCATAAACTGCAATGTACTTGTGGTGGGGTTTTATGAATAGATATCATAGAACCGTAGGAAGAAGTCGAATTTCAAAAAAAAAACGGAATTTTCTTATTTCGTTTTTTGCTTCGAGATGGACTAATTGGAAAGGGGATCCCTTTTTCTGGGAAATTTTCGATTACAGGGGATGAGCTCCGTGTGATGGAGGTGGCTTTTCTTTGTGTATTGTTGTAGGAAAATGGAGTAGCCCTTTRTTTTTTTTTGAGTTCACAAGGGAAACTCAACACCGTTTAAAGCCAGATTATGATGAACATTACAGGATAGACTGAAACTAGTTTATCTGGAAAATTTCTAAAAATTTTAGAATCCTCTCGCCAGTTCCAGCCAAGGTATATCAGCTTCAGTCCTAAAAATTGCATTTTTGCGCTGAAATCGCGATTTTTGGTACCTAAACTATATATAACTCGGCTGGAACTGGTGAGCGGATTTTAAAATTTTCAGAGTTTTCTAGATAGACTATCCTCAATCTATACTGGAGGTTCCCTTGTTAGCTTGACATCTTATATGGTCTCCAAAACAATACATGACGAGAGAATTCGAAATGTAATGAGCAGAATACATTGTGGGCATAGCATAATTTTATAACTAATTGAAAGAATATGATGAGTAGCTAGCGAAATTTGAGAATGTTCCAGAATTCGAAATGATGAACTTTGCTGAAAGAGGTGTTAAAAATTTGAATGCAGCTAAAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCATAGAACCGTAGGAAGAAGT</pcr_primer_p1>
		<pcr_primer_p2>ATGTTCATCATAATCTGGCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ATCATAGAACCGTAGGAAGAAGTCGAATTTCAAAAAAAAAACGGAATTTTCTTATTTCGTTTTTTGCTTCGAGATGGACTAATTGGAAAGGGGATCCCTTTTTCTGGGAAATTTTCGATTACAGGGGATGAGCTCCGTGTGATGGAGGTGGCTTTTCTTTGTGTATTGTTGTAGGAAAATGGAGTAGCCCTTTTTTTTTTTTTGAGTTCACAAGGGAAACTCAACACCGTTTAAAGCCAGATTATGATGAACAT</canonical_amplicon>
		<polymorphic_amplicon>ATCATAGAACCGTAGGAAGAAGTCGAATTTCAAAAAAAAAACGGAATTTTCTTATTTCGTTTTTTGCTTCGAGATGGACTAATTGGAAAGGGGATCCCTTTTTCTGGGAAATTTTCGATTACAGGGGATGAGCTCCGTGTGATGGAGGTGGCTTTTCTTTGTGTATTGTTGTAGGAAAATGGAGTAGCCCTTTRTTTTTTTTTGAGTTCACAAGGGAAACTCAACACCGTTTAAAGCCAGATTATGATGAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23668</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>132945</contig_pos>
        <strand></strand>
        <context>AGGGAAACTC[A/G]ACACCGTTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGAAAATGGAGTAGCCCTTTTTTTTTTTTTGAGTTCACAAGGGAAACTC</left_flank>
        <right_flank>ACACCGTTTAAAGCCAGATTATGATGAACATTACAGGATAGACTGAAACT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATTTTCTAAAACTAGGTTAAATTTTGGACTGGAAAGAAACTTTGAAAGAGATGAAAGAAAAATGACAAATCTTAATATTTAAAGTCGCAATTCAAAACTGTGGAAGTGGACCACTCTGATGGCCGCCATCTACACATAAAAGTTCCTGAAGGCAATTGGTCCCATGAGAGTCGAAGAAAAAATAGGGAAGAGGGAAGCAAGCAGCTGAAGGGCTATTTATTATCTGTACGTGCATAAACTGCAATGTACTTGTGGTGGGGTTTTATGAATAGATATCATAGAACCGTAGGAAGAAGTCGAATTTCAAAAAAAAAACGGAATTTTCTTATTTCGTTTTTTGCTTCGAGATGGACTAATTGGAAAGGGGATCCCTTTTTCTGGGAAATTTTCGATTACAGGGGATGAGCTCCGTGTGATGGAGGTGGCTTTTCTTTGTGTATTGTTGTAGGAAAATGGAGTAGCCCTTTTTTTTTTTTTGAGTTCACAAGGGAAACTCAACACCGTTTAAAGCCAGATTATGATGAACATTACAGGATAGACTGAAACTAGTTTATCTGGAAAATTTCTAAAAATTTTAGAATCCTCTCGCCAGTTCCAGCCAAGGTATATCAGCTTCAGTCCTAAAAATTGCATTTTTGCGCTGAAATCGCGATTTTTGGTACCTAAACTATATATAACTCGGCTGGAACTGGTGAGCGGATTTTAAAATTTTCAGAGTTTTCTAGATAGACTATCCTCAATCTATACTGGAGGTTCCCTTGTTAGCTTGACATCTTATATGGTCTCCAAAACAATACATGACGAGAGAATTCGAAATGTAATGAGCAGAATACATTGTGGGCATAGCATAATTTTATAACTAATTGAAAGAATATGATGAGTAGCTAGCGAAATTTGAGAATGTTCCAGAATTCGAAATGATGAACTTTGCTGAAAGAGGTGTTAAAAATTTGAATGCAGCTAAAAGAAGGAGAAAAATTTGAACGAAAACGGAAGG</canonical>
            <polymorphic>AATATTTTCTAAAACTAGGTTAAATTTTGGACTGGAAAGAAACTTTGAAAGAGATGAAAGAAAAATGACAAATCTTAATATTTAAAGTCGCAATTCAAAACTGTGGAAGTGGACCACTCTGATGGCCGCCATCTACACATAAAAGTTCCTGAAGGCAATTGGTCCCATGAGAGTCGAAGAAAAAATAGGGAAGAGGGAAGCAAGCAGCTGAAGGGCTATTTATTATCTGTACGTGCATAAACTGCAATGTACTTGTGGTGGGGTTTTATGAATAGATATCATAGAACCGTAGGAAGAAGTCGAATTTCAAAAAAAAAACGGAATTTTCTTATTTCGTTTTTTGCTTCGAGATGGACTAATTGGAAAGGGGATCCCTTTTTCTGGGAAATTTTCGATTACAGGGGATGAGCTCCGTGTGATGGAGGTGGCTTTTCTTTGTGTATTGTTGTAGGAAAATGGAGTAGCCCTTTTTTTTTTTTTGAGTTCACAAGGGAAACTCRACACCGTTTAAAGCCAGATTATGATGAACATTACAGGATAGACTGAAACTAGTTTATCTGGAAAATTTCTAAAAATTTTAGAATCCTCTCGCCAGTTCCAGCCAAGGTATATCAGCTTCAGTCCTAAAAATTGCATTTTTGCGCTGAAATCGCGATTTTTGGTACCTAAACTATATATAACTCGGCTGGAACTGGTGAGCGGATTTTAAAATTTTCAGAGTTTTCTAGATAGACTATCCTCAATCTATACTGGAGGTTCCCTTGTTAGCTTGACATCTTATATGGTCTCCAAAACAATACATGACGAGAGAATTCGAAATGTAATGAGCAGAATACATTGTGGGCATAGCATAATTTTATAACTAATTGAAAGAATATGATGAGTAGCTAGCGAAATTTGAGAATGTTCCAGAATTCGAAATGATGAACTTTGCTGAAAGAGGTGTTAAAAATTTGAATGCAGCTAAAAGAAGGAGAAAAATTTGAACGAAAACGGAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGGAAATTTTCGATTACAG</pcr_primer_p1>
		<pcr_primer_p2>AATTTTTAGGACTGAAGCTGATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGGGAAATTTTCGATTACAGGGGATGAGCTCCGTGTGATGGAGGTGGCTTTTCTTTGTGTATTGTTGTAGGAAAATGGAGTAGCCCTTTTTTTTTTTTTGAGTTCACAAGGGAAACTCAACACCGTTTAAAGCCAGATTATGATGAACATTACAGGATAGACTGAAACTAGTTTATCTGGAAAATTTCTAAAAATTTTAGAATCCTCTCGCCAGTTCCAGCCAAGGTATATCAGCTTCAGTCCTAAAAATT</canonical_amplicon>
		<polymorphic_amplicon>TGGGAAATTTTCGATTACAGGGGATGAGCTCCGTGTGATGGAGGTGGCTTTTCTTTGTGTATTGTTGTAGGAAAATGGAGTAGCCCTTTTTTTTTTTTTGAGTTCACAAGGGAAACTCRACACCGTTTAAAGCCAGATTATGATGAACATTACAGGATAGACTGAAACTAGTTTATCTGGAAAATTTCTAAAAATTTTAGAATCCTCTCGCCAGTTCCAGCCAAGGTATATCAGCTTCAGTCCTAAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23669</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>132985</contig_pos>
        <strand>+</strand>
        <context>ATTACAGGAT[A/G]GACTGAAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGGAAACTCAACACCGTTTAAAGCCAGATTATGATGAACATTACAGGAT</left_flank>
        <right_flank>GACTGAAACTAGTTTATCTGGAAAATTTCTAAAAATTTTAGAATCCTCTC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTTTGAAAGAGATGAAAGAAAAATGACAAATCTTAATATTTAAAGTCGCAATTCAAAACTGTGGAAGTGGACCACTCTGATGGCCGCCATCTACACATAAAAGTTCCTGAAGGCAATTGGTCCCATGAGAGTCGAAGAAAAAATAGGGAAGAGGGAAGCAAGCAGCTGAAGGGCTATTTATTATCTGTACGTGCATAAACTGCAATGTACTTGTGGTGGGGTTTTATGAATAGATATCATAGAACCGTAGGAAGAAGTCGAATTTCAAAAAAAAAACGGAATTTTCTTATTTCGTTTTTTGCTTCGAGATGGACTAATTGGAAAGGGGATCCCTTTTTCTGGGAAATTTTCGATTACAGGGGATGAGCTCCGTGTGATGGAGGTGGCTTTTCTTTGTGTATTGTTGTAGGAAAATGGAGTAGCCCTTTTTTTTTTTTTGAGTTCACAAGGGAAACTCAACACCGTTTAAAGCCAGATTATGATGAACATTACAGGATAGACTGAAACTAGTTTATCTGGAAAATTTCTAAAAATTTTAGAATCCTCTCGCCAGTTCCAGCCAAGGTATATCAGCTTCAGTCCTAAAAATTGCATTTTTGCGCTGAAATCGCGATTTTTGGTACCTAAACTATATATAACTCGGCTGGAACTGGTGAGCGGATTTTAAAATTTTCAGAGTTTTCTAGATAGACTATCCTCAATCTATACTGGAGGTTCCCTTGTTAGCTTGACATCTTATATGGTCTCCAAAACAATACATGACGAGAGAATTCGAAATGTAATGAGCAGAATACATTGTGGGCATAGCATAATTTTATAACTAATTGAAAGAATATGATGAGTAGCTAGCGAAATTTGAGAATGTTCCAGAATTCGAAATGATGAACTTTGCTGAAAGAGGTGTTAAAAATTTGAATGCAGCTAAAAGAAGGAGAAAAATTTGAACGAAAACGGAAGGAATCTCTTTTTATGATCATGTTTTTTTTTCAACGGGGGGG</canonical>
            <polymorphic>AACTTTGAAAGAGATGAAAGAAAAATGACAAATCTTAATATTTAAAGTCGCAATTCAAAACTGTGGAAGTGGACCACTCTGATGGCCGCCATCTACACATAAAAGTTCCTGAAGGCAATTGGTCCCATGAGAGTCGAAGAAAAAATAGGGAAGAGGGAAGCAAGCAGCTGAAGGGCTATTTATTATCTGTACGTGCATAAACTGCAATGTACTTGTGGTGGGGTTTTATGAATAGATATCATAGAACCGTAGGAAGAAGTCGAATTTCAAAAAAAAAACGGAATTTTCTTATTTCGTTTTTTGCTTCGAGATGGACTAATTGGAAAGGGGATCCCTTTTTCTGGGAAATTTTCGATTACAGGGGATGAGCTCCGTGTGATGGAGGTGGCTTTTCTTTGTGTATTGTTGTAGGAAAATGGAGTAGCCCTTTTTTTTTTTTTGAGTTCACAAGGGAAACTCAACACCGTTTAAAGCCAGATTATGATGAACATTACAGGATRGACTGAAACTAGTTTATCTGGAAAATTTCTAAAAATTTTAGAATCCTCTCGCCAGTTCCAGCCAAGGTATATCAGCTTCAGTCCTAAAAATTGCATTTTTGCGCTGAAATCGCGATTTTTGGTACCTAAACTATATATAACTCGGCTGGAACTGGTGAGCGGATTTTAAAATTTTCAGAGTTTTCTAGATAGACTATCCTCAATCTATACTGGAGGTTCCCTTGTTAGCTTGACATCTTATATGGTCTCCAAAACAATACATGACGAGAGAATTCGAAATGTAATGAGCAGAATACATTGTGGGCATAGCATAATTTTATAACTAATTGAAAGAATATGATGAGTAGCTAGCGAAATTTGAGAATGTTCCAGAATTCGAAATGATGAACTTTGCTGAAAGAGGTGTTAAAAATTTGAATGCAGCTAAAAGAAGGAGAAAAATTTGAACGAAAACGGAAGGAATCTCTTTTTATGATCATGTTTTTTTTTCAACGGGGGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGGAAATTTTCGATTACAG</pcr_primer_p1>
		<pcr_primer_p2>AATTTTTAGGACTGAAGCTGATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGGGAAATTTTCGATTACAGGGGATGAGCTCCGTGTGATGGAGGTGGCTTTTCTTTGTGTATTGTTGTAGGAAAATGGAGTAGCCCTTTTTTTTTTTTTGAGTTCACAAGGGAAACTCAACACCGTTTAAAGCCAGATTATGATGAACATTACAGGATAGACTGAAACTAGTTTATCTGGAAAATTTCTAAAAATTTTAGAATCCTCTCGCCAGTTCCAGCCAAGGTATATCAGCTTCAGTCCTAAAAATT</canonical_amplicon>
		<polymorphic_amplicon>TGGGAAATTTTCGATTACAGGGGATGAGCTCCGTGTGATGGAGGTGGCTTTTCTTTGTGTATTGTTGTAGGAAAATGGAGTAGCCCTTTTTTTTTTTTTGAGTTCACAAGGGAAACTCAACACCGTTTAAAGCCAGATTATGATGAACATTACAGGATRGACTGAAACTAGTTTATCTGGAAAATTTCTAAAAATTTTAGAATCCTCTCGCCAGTTCCAGCCAAGGTATATCAGCTTCAGTCCTAAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23670</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>160255</contig_pos>
        <strand>+</strand>
        <context>GTCGGGCCTG[A/G]TTATTCATGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTGGAAAATTTCAATTCTGGAAAACCCGGGGCCAGTAGGTCGGGCCTG</left_flank>
        <right_flank>TTATTCATGTATAGGAAAAGGACAGTTTTCAATTGCTGTCTTCCTGGGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGAATTAAATAGTTCTGGAAATATGAAATGACTTGAAAAAAAGTTCAATAAATAAACTCCCGGTGATTGGAATAAAGCTTACATATTCGGTTCAAAACAGTTACAGTATAACCTGTTAGAGAAAATCCGCCGAACTTTTAACTTTGAGCCAATTTATTTCGATTTCTGCCAAAAAAGGTCAACTGTGAATATAGGAACTTCACAAAATCTAAGAAATAGGATGCAATTTTATTATACTTGTTGAGGTTCCCAACAGAAGACCCAAAGTCGATTTCTGGAAAAAACGTCAAAATCTGCAAGTTTTCTAAACTTTCCGGAATTTAAATTCGGTTTTCCGGGAAGTTTATTGTAACCGCAAAATCTGGAAAAAACATATGTAATTACAACTGGCGGGAATTTTTGAATTTTCAAGACCCGCCCAGGGTTTTATCTAGTTTTTTCTCTCTCAAATTGGAAAATTTCAATTCTGGAAAACCCGGGGCCAGTAGGTCGGGCCTGATTATTCATGTATAGGAAAAGGACAGTTTTCAATTGCTGTCTTCCTGGGAGCTTTTCCTGGAAATCGGACACCTCTAGAATTCAAAATATCAACCGATGAGCAGTAAAAGAAACATCTACCAAAGTTAGTACTACTTTAATATACATATAGCGGTTTTCAAAACAGAAATCAGACTATAAAAACTGGCTTGCCTTTCAAGTTTATGCTTAAAAATCATATTAGTCGAAAGTCAAGCCTCACATCATTTCTAGCATTGATCATTGTTCTGCAAAAACTTTTCTTTAGAAGGCAAAAATAAAAAATAGCATTGCTCGATCCATTCCTGTTTTTGACATATTTATTTAGGATGCTAGTTTAGTTAGTCTATGAATTTCCAGGAAATAATGACGGAAAAATGGATTTTCAAAAAAATGGGGAAACTTTCTGGCTTTCCCCGAACCCTTTGTGATTTGTGGTCAACGGAAAAGCGGTCAAAAAAAGTTCAATTGAAAAGGTATAGA</canonical>
            <polymorphic>GTGAATTAAATAGTTCTGGAAATATGAAATGACTTGAAAAAAAGTTCAATAAATAAACTCCCGGTGATTGGAATAAAGCTTACATATTCGGTTCAAAACAGTTACAGTATAACCTGTTAGAGAAAATCCGCCGAACTTTTAACTTTGAGCCAATTTATTTCGATTTCTGCCAAAAAAGGTCAACTGTGAATATAGGAACTTCACAAAATCTAAGAAATAGGATGCAATTTTATTATACTTGTTGAGGTTCCCAACAGAAGACCCAAAGTCGATTTCTGGAAAAAACGTCAAAATCTGCAAGTTTTCTAAACTTTCCGGAATTTAAATTCGGTTTTCCGGGAAGTTTATTGTAACCGCAAAATCTGGAAAAAACATATGTAATTACAACTGGCGGGAATTTTTGAATTTTCAAGACCCGCCCAGGGTTTTATCTAGTTTTTTCTCTCTCAAATTGGAAAATTTCAATTCTGGAAAACCCGGGGCCAGTAGGTCGGGCCTGRTTATTCATGTATAGGAAAAGGACAGTTTTCAATTGCTGTCTTCCTGGGAGCTTTTCCTGGAAATCGGACACCTCTAGAATTCAAAATATCAACCGATGAGCAGTAAAAGAAACATCTACCAAAGTTAGTACTACTTTAATATACATATAGCGGTTTTCAAAACAGAAATCAGACTATAAAAACTGGCTTGCCTTTCAAGTTTATGCTTAAAAATCATATTAGTCGAAAGTCAAGCCTCACATCATTTCTAGCATTGATCATTGTTCTGCAAAAACTTTTCTTTAGAAGGCAAAAATAAAAAATAGCATTGCTCGATCCATTCCTGTTTTTGACATATTTATTTAGGATGCTAGTTTAGTTAGTCTATGAATTTCCAGGAAATAATGACGGAAAAATGGATTTTCAAAAAAATGGGGAAACTTTCTGGCTTTCCCCGAACCCTTTGTGATTTGTGGTCAACGGAAAAGCGGTCAAAAAAAGTTCAATTGAAAAGGTATAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCTCTCAAATTGGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGCCAGTTTTTATAGTCTGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCTCTCAAATTGGAAAATTTCAATTCTGGAAAACCCGGGGCCAGTAGGTCGGGCCTGATTATTCATGTATAGGAAAAGGACAGTTTTCAATTGCTGTCTTCCTGGGAGCTTTTCCTGGAAATCGGACACCTCTAGAATTCAAAATATCAACCGATGAGCAGTAAAAGAAACATCTACCAAAGTTAGTACTACTTTAATATACATATAGCGGTTTTCAAAACAGAAATCAGACTATAAAAACTGGCT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCTCTCAAATTGGAAAATTTCAATTCTGGAAAACCCGGGGCCAGTAGGTCGGGCCTGRTTATTCATGTATAGGAAAAGGACAGTTTTCAATTGCTGTCTTCCTGGGAGCTTTTCCTGGAAATCGGACACCTCTAGAATTCAAAATATCAACCGATGAGCAGTAAAAGAAACATCTACCAAAGTTAGTACTACTTTAATATACATATAGCGGTTTTCAAAACAGAAATCAGACTATAAAAACTGGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23671</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>160306</contig_pos>
        <strand>+</strand>
        <context>TTCCTGGGAG[C/T]TTTTCCTGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATTCATGTATAGGAAAAGGACAGTTTTCAATTGCTGTCTTCCTGGGAG</left_flank>
        <right_flank>TTTTCCTGGAAATCGGACACCTCTAGAATTCAAAATATCAACCGATGAGC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAAACTCCCGGTGATTGGAATAAAGCTTACATATTCGGTTCAAAACAGTTACAGTATAACCTGTTAGAGAAAATCCGCCGAACTTTTAACTTTGAGCCAATTTATTTCGATTTCTGCCAAAAAAGGTCAACTGTGAATATAGGAACTTCACAAAATCTAAGAAATAGGATGCAATTTTATTATACTTGTTGAGGTTCCCAACAGAAGACCCAAAGTCGATTTCTGGAAAAAACGTCAAAATCTGCAAGTTTTCTAAACTTTCCGGAATTTAAATTCGGTTTTCCGGGAAGTTTATTGTAACCGCAAAATCTGGAAAAAACATATGTAATTACAACTGGCGGGAATTTTTGAATTTTCAAGACCCGCCCAGGGTTTTATCTAGTTTTTTCTCTCTCAAATTGGAAAATTTCAATTCTGGAAAACCCGGGGCCAGTAGGTCGGGCCTGATTATTCATGTATAGGAAAAGGACAGTTTTCAATTGCTGTCTTCCTGGGAGCTTTTCCTGGAAATCGGACACCTCTAGAATTCAAAATATCAACCGATGAGCAGTAAAAGAAACATCTACCAAAGTTAGTACTACTTTAATATACATATAGCGGTTTTCAAAACAGAAATCAGACTATAAAAACTGGCTTGCCTTTCAAGTTTATGCTTAAAAATCATATTAGTCGAAAGTCAAGCCTCACATCATTTCTAGCATTGATCATTGTTCTGCAAAAACTTTTCTTTAGAAGGCAAAAATAAAAAATAGCATTGCTCGATCCATTCCTGTTTTTGACATATTTATTTAGGATGCTAGTTTAGTTAGTCTATGAATTTCCAGGAAATAATGACGGAAAAATGGATTTTCAAAAAAATGGGGAAACTTTCTGGCTTTCCCCGAACCCTTTGTGATTTGTGGTCAACGGAAAAGCGGTCAAAAAAAGTTCAATTGAAAAGGTATAGAATTCGTTCAATTTGAAAAGGAAAGGAAGTGAAAAGATAAATGAAGTTTAGC</canonical>
            <polymorphic>AATAAACTCCCGGTGATTGGAATAAAGCTTACATATTCGGTTCAAAACAGTTACAGTATAACCTGTTAGAGAAAATCCGCCGAACTTTTAACTTTGAGCCAATTTATTTCGATTTCTGCCAAAAAAGGTCAACTGTGAATATAGGAACTTCACAAAATCTAAGAAATAGGATGCAATTTTATTATACTTGTTGAGGTTCCCAACAGAAGACCCAAAGTCGATTTCTGGAAAAAACGTCAAAATCTGCAAGTTTTCTAAACTTTCCGGAATTTAAATTCGGTTTTCCGGGAAGTTTATTGTAACCGCAAAATCTGGAAAAAACATATGTAATTACAACTGGCGGGAATTTTTGAATTTTCAAGACCCGCCCAGGGTTTTATCTAGTTTTTTCTCTCTCAAATTGGAAAATTTCAATTCTGGAAAACCCGGGGCCAGTAGGTCGGGCCTGATTATTCATGTATAGGAAAAGGACAGTTTTCAATTGCTGTCTTCCTGGGAGYTTTTCCTGGAAATCGGACACCTCTAGAATTCAAAATATCAACCGATGAGCAGTAAAAGAAACATCTACCAAAGTTAGTACTACTTTAATATACATATAGCGGTTTTCAAAACAGAAATCAGACTATAAAAACTGGCTTGCCTTTCAAGTTTATGCTTAAAAATCATATTAGTCGAAAGTCAAGCCTCACATCATTTCTAGCATTGATCATTGTTCTGCAAAAACTTTTCTTTAGAAGGCAAAAATAAAAAATAGCATTGCTCGATCCATTCCTGTTTTTGACATATTTATTTAGGATGCTAGTTTAGTTAGTCTATGAATTTCCAGGAAATAATGACGGAAAAATGGATTTTCAAAAAAATGGGGAAACTTTCTGGCTTTCCCCGAACCCTTTGTGATTTGTGGTCAACGGAAAAGCGGTCAAAAAAAGTTCAATTGAAAAGGTATAGAATTCGTTCAATTTGAAAAGGAAAGGAAGTGAAAAGATAAATGAAGTTTAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>501 472 27</canonical_bands>
                <polymorphic_bands>973 27</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>333 193 136 124 71 55 48 27 13</canonical_bands>
                <polymorphic_bands>333 193 191 124 71 48 27 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCTCTCAAATTGGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGCCAGTTTTTATAGTCTGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCTCTCAAATTGGAAAATTTCAATTCTGGAAAACCCGGGGCCAGTAGGTCGGGCCTGATTATTCATGTATAGGAAAAGGACAGTTTTCAATTGCTGTCTTCCTGGGAGCTTTTCCTGGAAATCGGACACCTCTAGAATTCAAAATATCAACCGATGAGCAGTAAAAGAAACATCTACCAAAGTTAGTACTACTTTAATATACATATAGCGGTTTTCAAAACAGAAATCAGACTATAAAAACTGGCT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCTCTCAAATTGGAAAATTTCAATTCTGGAAAACCCGGGGCCAGTAGGTCGGGCCTGATTATTCATGTATAGGAAAAGGACAGTTTTCAATTGCTGTCTTCCTGGGAGYTTTTCCTGGAAATCGGACACCTCTAGAATTCAAAATATCAACCGATGAGCAGTAAAAGAAACATCTACCAAAGTTAGTACTACTTTAATATACATATAGCGGTTTTCAAAACAGAAATCAGACTATAAAAACTGGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23672</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>160326</contig_pos>
        <strand>+</strand>
        <context>AAATCGGACA[C/T]CTSYAGAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACAGTTTTCAATTGCTGTCTTCCTGGGAGCTTTTCCTGGAAATCGGACA</left_flank>
        <right_flank>CTCTAGAATTCAAAATATCAACCGATGAGCAGTAAAAGAAACATCTACCA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAAAGCTTACATATTCGGTTCAAAACAGTTACAGTATAACCTGTTAGAGAAAATCCGCCGAACTTTTAACTTTGAGCCAATTTATTTCGATTTCTGCCAAAAAAGGTCAACTGTGAATATAGGAACTTCACAAAATCTAAGAAATAGGATGCAATTTTATTATACTTGTTGAGGTTCCCAACAGAAGACCCAAAGTCGATTTCTGGAAAAAACGTCAAAATCTGCAAGTTTTCTAAACTTTCCGGAATTTAAATTCGGTTTTCCGGGAAGTTTATTGTAACCGCAAAATCTGGAAAAAACATATGTAATTACAACTGGCGGGAATTTTTGAATTTTCAAGACCCGCCCAGGGTTTTATCTAGTTTTTTCTCTCTCAAATTGGAAAATTTCAATTCTGGAAAACCCGGGGCCAGTAGGTCGGGCCTGATTATTCATGTATAGGAAAAGGACAGTTTTCAATTGCTGTCTTCCTGGGAGCTTTTCCTGGAAATCGGACACCTCTAGAATTCAAAATATCAACCGATGAGCAGTAAAAGAAACATCTACCAAAGTTAGTACTACTTTAATATACATATAGCGGTTTTCAAAACAGAAATCAGACTATAAAAACTGGCTTGCCTTTCAAGTTTATGCTTAAAAATCATATTAGTCGAAAGTCAAGCCTCACATCATTTCTAGCATTGATCATTGTTCTGCAAAAACTTTTCTTTAGAAGGCAAAAATAAAAAATAGCATTGCTCGATCCATTCCTGTTTTTGACATATTTATTTAGGATGCTAGTTTAGTTAGTCTATGAATTTCCAGGAAATAATGACGGAAAAATGGATTTTCAAAAAAATGGGGAAACTTTCTGGCTTTCCCCGAACCCTTTGTGATTTGTGGTCAACGGAAAAGCGGTCAAAAAAAGTTCAATTGAAAAGGTATAGAATTCGTTCAATTTGAAAAGGAAAGGAAGTGAAAAGATAAATGAAGTTTAGCAAAGAAAATTTGAAAAGTGA</canonical>
            <polymorphic>AATAAAGCTTACATATTCGGTTCAAAACAGTTACAGTATAACCTGTTAGAGAAAATCCGCCGAACTTTTAACTTTGAGCCAATTTATTTCGATTTCTGCCAAAAAAGGTCAACTGTGAATATAGGAACTTCACAAAATCTAAGAAATAGGATGCAATTTTATTATACTTGTTGAGGTTCCCAACAGAAGACCCAAAGTCGATTTCTGGAAAAAACGTCAAAATCTGCAAGTTTTCTAAACTTTCCGGAATTTAAATTCGGTTTTCCGGGAAGTTTATTGTAACCGCAAAATCTGGAAAAAACATATGTAATTACAACTGGCGGGAATTTTTGAATTTTCAAGACCCGCCCAGGGTTTTATCTAGTTTTTTCTCTCTCAAATTGGAAAATTTCAATTCTGGAAAACCCGGGGCCAGTAGGTCGGGCCTGATTATTCATGTATAGGAAAAGGACAGTTTTCAATTGCTGTCTTCCTGGGAGCTTTTCCTGGAAATCGGACAYCTCTAGAATTCAAAATATCAACCGATGAGCAGTAAAAGAAACATCTACCAAAGTTAGTACTACTTTAATATACATATAGCGGTTTTCAAAACAGAAATCAGACTATAAAAACTGGCTTGCCTTTCAAGTTTATGCTTAAAAATCATATTAGTCGAAAGTCAAGCCTCACATCATTTCTAGCATTGATCATTGTTCTGCAAAAACTTTTCTTTAGAAGGCAAAAATAAAAAATAGCATTGCTCGATCCATTCCTGTTTTTGACATATTTATTTAGGATGCTAGTTTAGTTAGTCTATGAATTTCCAGGAAATAATGACGGAAAAATGGATTTTCAAAAAAATGGGGAAACTTTCTGGCTTTCCCCGAACCCTTTGTGATTTGTGGTCAACGGAAAAGCGGTCAAAAAAAGTTCAATTGAAAAGGTATAGAATTCGTTCAATTTGAAAAGGAAAGGAAGTGAAAAGATAAATGAAGTTTAGCAAAGAAAATTTGAAAAGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>367 208 169 117 76 40 15 7 1</canonical_bands>
                <polymorphic_bands>536 208 117 76 40 15 7 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATAGGAAAAGGACAGTTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>TCAATGCTAGAAATGATGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TATAGGAAAAGGACAGTTTTCAATTGCTGTCTTCCTGGGAGCTTTTCCTGGAAATCGGACACCTCTAGAATTCAAAATATCAACCGATGAGCAGTAAAAGAAACATCTACCAAAGTTAGTACTACTTTAATATACATATAGCGGTTTTCAAAACAGAAATCAGACTATAAAAACTGGCTTGCCTTTCAAGTTTATGCTTAAAAATCATATTAGTCGAAAGTCAAGCCTCACATCATTTCTAGCATTGA</canonical_amplicon>
		<polymorphic_amplicon>TATAGGAAAAGGACAGTTTTCAATTGCTGTCTTCCTGGGAGCTTTTCCTGGAAATCGGACAYCTCTAGAATTCAAAATATCAACCGATGAGCAGTAAAAGAAACATCTACCAAAGTTAGTACTACTTTAATATACATATAGCGGTTTTCAAAACAGAAATCAGACTATAAAAACTGGCTTGCCTTTCAAGTTTATGCTTAAAAATCATATTAGTCGAAAGTCAAGCCTCACATCATTTCTAGCATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23673</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>160329</contig_pos>
        <strand>+</strand>
        <context>TCGGACAYCT[C/G]YAGAATTCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGTTTTCAATTGCTGTCTTCCTGGGAGCTTTTCCTGGAAATCGGACACCT</left_flank>
        <right_flank>TAGAATTCAAAATATCAACCGATGAGCAGTAAAAGAAACATCTACCAAAG</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGCTTACATATTCGGTTCAAAACAGTTACAGTATAACCTGTTAGAGAAAATCCGCCGAACTTTTAACTTTGAGCCAATTTATTTCGATTTCTGCCAAAAAAGGTCAACTGTGAATATAGGAACTTCACAAAATCTAAGAAATAGGATGCAATTTTATTATACTTGTTGAGGTTCCCAACAGAAGACCCAAAGTCGATTTCTGGAAAAAACGTCAAAATCTGCAAGTTTTCTAAACTTTCCGGAATTTAAATTCGGTTTTCCGGGAAGTTTATTGTAACCGCAAAATCTGGAAAAAACATATGTAATTACAACTGGCGGGAATTTTTGAATTTTCAAGACCCGCCCAGGGTTTTATCTAGTTTTTTCTCTCTCAAATTGGAAAATTTCAATTCTGGAAAACCCGGGGCCAGTAGGTCGGGCCTGATTATTCATGTATAGGAAAAGGACAGTTTTCAATTGCTGTCTTCCTGGGAGCTTTTCCTGGAAATCGGACACCTCTAGAATTCAAAATATCAACCGATGAGCAGTAAAAGAAACATCTACCAAAGTTAGTACTACTTTAATATACATATAGCGGTTTTCAAAACAGAAATCAGACTATAAAAACTGGCTTGCCTTTCAAGTTTATGCTTAAAAATCATATTAGTCGAAAGTCAAGCCTCACATCATTTCTAGCATTGATCATTGTTCTGCAAAAACTTTTCTTTAGAAGGCAAAAATAAAAAATAGCATTGCTCGATCCATTCCTGTTTTTGACATATTTATTTAGGATGCTAGTTTAGTTAGTCTATGAATTTCCAGGAAATAATGACGGAAAAATGGATTTTCAAAAAAATGGGGAAACTTTCTGGCTTTCCCCGAACCCTTTGTGATTTGTGGTCAACGGAAAAGCGGTCAAAAAAAGTTCAATTGAAAAGGTATAGAATTCGTTCAATTTGAAAAGGAAAGGAAGTGAAAAGATAAATGAAGTTTAGCAAAGAAAATTTGAAAAGTGATGT</canonical>
            <polymorphic>AAAGCTTACATATTCGGTTCAAAACAGTTACAGTATAACCTGTTAGAGAAAATCCGCCGAACTTTTAACTTTGAGCCAATTTATTTCGATTTCTGCCAAAAAAGGTCAACTGTGAATATAGGAACTTCACAAAATCTAAGAAATAGGATGCAATTTTATTATACTTGTTGAGGTTCCCAACAGAAGACCCAAAGTCGATTTCTGGAAAAAACGTCAAAATCTGCAAGTTTTCTAAACTTTCCGGAATTTAAATTCGGTTTTCCGGGAAGTTTATTGTAACCGCAAAATCTGGAAAAAACATATGTAATTACAACTGGCGGGAATTTTTGAATTTTCAAGACCCGCCCAGGGTTTTATCTAGTTTTTTCTCTCTCAAATTGGAAAATTTCAATTCTGGAAAACCCGGGGCCAGTAGGTCGGGCCTGATTATTCATGTATAGGAAAAGGACAGTTTTCAATTGCTGTCTTCCTGGGAGCTTTTCCTGGAAATCGGACACCTSTAGAATTCAAAATATCAACCGATGAGCAGTAAAAGAAACATCTACCAAAGTTAGTACTACTTTAATATACATATAGCGGTTTTCAAAACAGAAATCAGACTATAAAAACTGGCTTGCCTTTCAAGTTTATGCTTAAAAATCATATTAGTCGAAAGTCAAGCCTCACATCATTTCTAGCATTGATCATTGTTCTGCAAAAACTTTTCTTTAGAAGGCAAAAATAAAAAATAGCATTGCTCGATCCATTCCTGTTTTTGACATATTTATTTAGGATGCTAGTTTAGTTAGTCTATGAATTTCCAGGAAATAATGACGGAAAAATGGATTTTCAAAAAAATGGGGAAACTTTCTGGCTTTCCCCGAACCCTTTGTGATTTGTGGTCAACGGAAAAGCGGTCAAAAAAAGTTCAATTGAAAAGGTATAGAATTCGTTCAATTTGAAAAGGAAAGGAAGTGAAAAGATAAATGAAGTTTAGCAAAGAAAATTTGAAAAGTGATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>358 224 174 142 102</canonical_bands>
                <polymorphic_bands>358 316 224 102</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>500 202 106 58 48 47 39</canonical_bands>
                <polymorphic_bands>606 202 58 48 47 39</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATAGGAAAAGGACAGTTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>TCAATGCTAGAAATGATGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TATAGGAAAAGGACAGTTTTCAATTGCTGTCTTCCTGGGAGCTTTTCCTGGAAATCGGACACCTCTAGAATTCAAAATATCAACCGATGAGCAGTAAAAGAAACATCTACCAAAGTTAGTACTACTTTAATATACATATAGCGGTTTTCAAAACAGAAATCAGACTATAAAAACTGGCTTGCCTTTCAAGTTTATGCTTAAAAATCATATTAGTCGAAAGTCAAGCCTCACATCATTTCTAGCATTGA</canonical_amplicon>
		<polymorphic_amplicon>TATAGGAAAAGGACAGTTTTCAATTGCTGTCTTCCTGGGAGCTTTTCCTGGAAATCGGACACCTSTAGAATTCAAAATATCAACCGATGAGCAGTAAAAGAAACATCTACCAAAGTTAGTACTACTTTAATATACATATAGCGGTTTTCAAAACAGAAATCAGACTATAAAAACTGGCTTGCCTTTCAAGTTTATGCTTAAAAATCATATTAGTCGAAAGTCAAGCCTCACATCATTTCTAGCATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23674</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>160330</contig_pos>
        <strand>+</strand>
        <context>CGGACAYCTS[C/T]AGAATTCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTTCAATTGCTGTCTTCCTGGGAGCTTTTCCTGGAAATCGGACACCTC</left_flank>
        <right_flank>AGAATTCAAAATATCAACCGATGAGCAGTAAAAGAAACATCTACCAAAGT</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCTTACATATTCGGTTCAAAACAGTTACAGTATAACCTGTTAGAGAAAATCCGCCGAACTTTTAACTTTGAGCCAATTTATTTCGATTTCTGCCAAAAAAGGTCAACTGTGAATATAGGAACTTCACAAAATCTAAGAAATAGGATGCAATTTTATTATACTTGTTGAGGTTCCCAACAGAAGACCCAAAGTCGATTTCTGGAAAAAACGTCAAAATCTGCAAGTTTTCTAAACTTTCCGGAATTTAAATTCGGTTTTCCGGGAAGTTTATTGTAACCGCAAAATCTGGAAAAAACATATGTAATTACAACTGGCGGGAATTTTTGAATTTTCAAGACCCGCCCAGGGTTTTATCTAGTTTTTTCTCTCTCAAATTGGAAAATTTCAATTCTGGAAAACCCGGGGCCAGTAGGTCGGGCCTGATTATTCATGTATAGGAAAAGGACAGTTTTCAATTGCTGTCTTCCTGGGAGCTTTTCCTGGAAATCGGACACCTCTAGAATTCAAAATATCAACCGATGAGCAGTAAAAGAAACATCTACCAAAGTTAGTACTACTTTAATATACATATAGCGGTTTTCAAAACAGAAATCAGACTATAAAAACTGGCTTGCCTTTCAAGTTTATGCTTAAAAATCATATTAGTCGAAAGTCAAGCCTCACATCATTTCTAGCATTGATCATTGTTCTGCAAAAACTTTTCTTTAGAAGGCAAAAATAAAAAATAGCATTGCTCGATCCATTCCTGTTTTTGACATATTTATTTAGGATGCTAGTTTAGTTAGTCTATGAATTTCCAGGAAATAATGACGGAAAAATGGATTTTCAAAAAAATGGGGAAACTTTCTGGCTTTCCCCGAACCCTTTGTGATTTGTGGTCAACGGAAAAGCGGTCAAAAAAAGTTCAATTGAAAAGGTATAGAATTCGTTCAATTTGAAAAGGAAAGGAAGTGAAAAGATAAATGAAGTTTAGCAAAGAAAATTTGAAAAGTGATGTC</canonical>
            <polymorphic>AAGCTTACATATTCGGTTCAAAACAGTTACAGTATAACCTGTTAGAGAAAATCCGCCGAACTTTTAACTTTGAGCCAATTTATTTCGATTTCTGCCAAAAAAGGTCAACTGTGAATATAGGAACTTCACAAAATCTAAGAAATAGGATGCAATTTTATTATACTTGTTGAGGTTCCCAACAGAAGACCCAAAGTCGATTTCTGGAAAAAACGTCAAAATCTGCAAGTTTTCTAAACTTTCCGGAATTTAAATTCGGTTTTCCGGGAAGTTTATTGTAACCGCAAAATCTGGAAAAAACATATGTAATTACAACTGGCGGGAATTTTTGAATTTTCAAGACCCGCCCAGGGTTTTATCTAGTTTTTTCTCTCTCAAATTGGAAAATTTCAATTCTGGAAAACCCGGGGCCAGTAGGTCGGGCCTGATTATTCATGTATAGGAAAAGGACAGTTTTCAATTGCTGTCTTCCTGGGAGCTTTTCCTGGAAATCGGACACCTCYAGAATTCAAAATATCAACCGATGAGCAGTAAAAGAAACATCTACCAAAGTTAGTACTACTTTAATATACATATAGCGGTTTTCAAAACAGAAATCAGACTATAAAAACTGGCTTGCCTTTCAAGTTTATGCTTAAAAATCATATTAGTCGAAAGTCAAGCCTCACATCATTTCTAGCATTGATCATTGTTCTGCAAAAACTTTTCTTTAGAAGGCAAAAATAAAAAATAGCATTGCTCGATCCATTCCTGTTTTTGACATATTTATTTAGGATGCTAGTTTAGTTAGTCTATGAATTTCCAGGAAATAATGACGGAAAAATGGATTTTCAAAAAAATGGGGAAACTTTCTGGCTTTCCCCGAACCCTTTGTGATTTGTGGTCAACGGAAAAGCGGTCAAAAAAAGTTCAATTGAAAAGGTATAGAATTCGTTCAATTTGAAAAGGAAAGGAAGTGAAAAGATAAATGAAGTTTAGCAAAGAAAATTTGAAAAGTGATGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>357 225 174 142 102</canonical_bands>
                <polymorphic_bands>357 316 225 102</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATAGGAAAAGGACAGTTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>TCAATGCTAGAAATGATGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TATAGGAAAAGGACAGTTTTCAATTGCTGTCTTCCTGGGAGCTTTTCCTGGAAATCGGACACCTCTAGAATTCAAAATATCAACCGATGAGCAGTAAAAGAAACATCTACCAAAGTTAGTACTACTTTAATATACATATAGCGGTTTTCAAAACAGAAATCAGACTATAAAAACTGGCTTGCCTTTCAAGTTTATGCTTAAAAATCATATTAGTCGAAAGTCAAGCCTCACATCATTTCTAGCATTGA</canonical_amplicon>
		<polymorphic_amplicon>TATAGGAAAAGGACAGTTTTCAATTGCTGTCTTCCTGGGAGCTTTTCCTGGAAATCGGACACCTCYAGAATTCAAAATATCAACCGATGAGCAGTAAAAGAAACATCTACCAAAGTTAGTACTACTTTAATATACATATAGCGGTTTTCAAAACAGAAATCAGACTATAAAAACTGGCTTGCCTTTCAAGTTTATGCTTAAAAATCATATTAGTCGAAAGTCAAGCCTCACATCATTTCTAGCATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23675</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>234300</contig_pos>
        <strand>+</strand>
        <context>AGATATCTTC[A/C]AAACTAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCAAAGACCCTATTTATGTGCTGCGTACAAAACATCAAGCAGATATCTTC</left_flank>
        <right_flank>AAACTAAAATTTAGAGTAAATGTGTTGTTATTTTTTTCATAAATCTCGTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAAGAGAAACCAGCTGCTTCGGTAACAAAAAATGCGACACTTTTTCGGCGGTACGCACACTTTTTTCTGCTTTTTTTGTGATGCTAAAATATTCACTGGGCCAATTTATGCTCAAGAACTGTGGATACAACCGAATTATTGCTCTGGACATCGAAATCACTTGCAAGAAAAAACAAATTCGGAGCCTTAGCCAATATTCATGCCAAAGACACTCAGAAGCAGAGTTGCAAGGACAATTTCTAAAGATTAATCTCGGCTCCAGTAAAGGCGGCTTTGATTTGAACCCATTTGACTATACCATTTGGGGATACTTGTCCCAGAAGATCTGCACAGAAACCTACCCAAGTTTTTAAGCTTTGAAGGTTGCCTAGAGCAAGAATGGGAGGATTTTCTTCAGCCAAAATTCTGGCTAGAAAGCTTAAAGAGCTTGGTAAAACATGAAATTTCGCAAAGACCCTATTTATGTGCTGCGTACAAAACATCAAGCAGATATCTTCCAAACTAAAATTTAGAGTAAATGTGTTGTTATTTTTTTCATAAATCTCGTAGAGCTTAGCCGCAGGCCCGACTGTTATTCTCTTAATAGTACTGTTTTATGAAGCGCAAACATTTTCCGTAAAAGTCTGAATTTCATCGAATCCCGTCGAGACTACAAACATTCACATTGGCATATAGCCTACCCGACAATTGGCAGCCACTCATGTTCGGGCTAATGAGAACGAATTCGAACCTTTTTCCCTCCTCCCGGAACGTTCTATTTTCATACAAGATCTCCATCGTAACGATCTCATTTGATCCTCCTTCATCCATTCTCTTTCCTCTCTTCGAACTAAATGATCTTACGGGGAACTTTATCAAAAAGATAAAGGATCGCTGGCAAGTATGACAGTATATGCGAATTCGTGTTTTTTGCTTTCCCTCCCGTTTCTGTCGCTCTCTTCTTGATCTCTCCACCTCTTGATGTTATATAAAAGTGTGAGTCCATGAGGACGAATGTC</canonical>
            <polymorphic>ACAAAGAGAAACCAGCTGCTTCGGTAACAAAAAATGCGACACTTTTTCGGCGGTACGCACACTTTTTTCTGCTTTTTTTGTGATGCTAAAATATTCACTGGGCCAATTTATGCTCAAGAACTGTGGATACAACCGAATTATTGCTCTGGACATCGAAATCACTTGCAAGAAAAAACAAATTCGGAGCCTTAGCCAATATTCATGCCAAAGACACTCAGAAGCAGAGTTGCAAGGACAATTTCTAAAGATTAATCTCGGCTCCAGTAAAGGCGGCTTTGATTTGAACCCATTTGACTATACCATTTGGGGATACTTGTCCCAGAAGATCTGCACAGAAACCTACCCAAGTTTTTAAGCTTTGAAGGTTGCCTAGAGCAAGAATGGGAGGATTTTCTTCAGCCAAAATTCTGGCTAGAAAGCTTAAAGAGCTTGGTAAAACATGAAATTTCGCAAAGACCCTATTTATGTGCTGCGTACAAAACATCAAGCAGATATCTTCMAAACTAAAATTTAGAGTAAATGTGTTGTTATTTTTTTCATAAATCTCGTAGAGCTTAGCCGCAGGCCCGACTGTTATTCTCTTAATAGTACTGTTTTATGAAGCGCAAACATTTTCCGTAAAAGTCTGAATTTCATCGAATCCCGTCGAGACTACAAACATTCACATTGGCATATAGCCTACCCGACAATTGGCAGCCACTCATGTTCGGGCTAATGAGAACGAATTCGAACCTTTTTCCCTCCTCCCGGAACGTTCTATTTTCATACAAGATCTCCATCGTAACGATCTCATTTGATCCTCCTTCATCCATTCTCTTTCCTCTCTTCGAACTAAATGATCTTACGGGGAACTTTATCAAAAAGATAAAGGATCGCTGGCAAGTATGACAGTATATGCGAATTCGTGTTTTTTGCTTTCCCTCCCGTTTCTGTCGCTCTCTTCTTGATCTCTCCACCTCTTGATGTTATATAAAAGTGTGAGTCCATGAGGACGAATGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAGCTTGGTAAAACATGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCAATGTGAATGTTTGTAGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAGAGCTTGGTAAAACATGAAATTTCGCAAAGACCCTATTTATGTGCTGCGTACAAAACATCAAGCAGATATCTTCCAAACTAAAATTTAGAGTAAATGTGTTGTTATTTTTTTCATAAATCTCGTAGAGCTTAGCCGCAGGCCCGACTGTTATTCTCTTAATAGTACTGTTTTATGAAGCGCAAACATTTTCCGTAAAAGTCTGAATTTCATCGAATCCCGTCGAGACTACAAACATTCACATTGG</canonical_amplicon>
		<polymorphic_amplicon>AAGAGCTTGGTAAAACATGAAATTTCGCAAAGACCCTATTTATGTGCTGCGTACAAAACATCAAGCAGATATCTTCMAAACTAAAATTTAGAGTAAATGTGTTGTTATTTTTTTCATAAATCTCGTAGAGCTTAGCCGCAGGCCCGACTGTTATTCTCTTAATAGTACTGTTTTATGAAGCGCAAACATTTTCCGTAAAAGTCTGAATTTCATCGAATCCCGTCGAGACTACAAACATTCACATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23676</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>234351</contig_pos>
        <strand>+</strand>
        <context>AAATCTCGTA[C/T]AGCTTAGCCG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACTAAAATTTAGAGTAAATGTGTTGTTATTTTTTTCATAAATCTCGTA</left_flank>
        <right_flank>AGCTTAGCCGCAGGCCCGACTGTTATTCTCTTAATAGTACTGTTTTATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTACGCACACTTTTTTCTGCTTTTTTTGTGATGCTAAAATATTCACTGGGCCAATTTATGCTCAAGAACTGTGGATACAACCGAATTATTGCTCTGGACATCGAAATCACTTGCAAGAAAAAACAAATTCGGAGCCTTAGCCAATATTCATGCCAAAGACACTCAGAAGCAGAGTTGCAAGGACAATTTCTAAAGATTAATCTCGGCTCCAGTAAAGGCGGCTTTGATTTGAACCCATTTGACTATACCATTTGGGGATACTTGTCCCAGAAGATCTGCACAGAAACCTACCCAAGTTTTTAAGCTTTGAAGGTTGCCTAGAGCAAGAATGGGAGGATTTTCTTCAGCCAAAATTCTGGCTAGAAAGCTTAAAGAGCTTGGTAAAACATGAAATTTCGCAAAGACCCTATTTATGTGCTGCGTACAAAACATCAAGCAGATATCTTCCAAACTAAAATTTAGAGTAAATGTGTTGTTATTTTTTTCATAAATCTCGTAGAGCTTAGCCGCAGGCCCGACTGTTATTCTCTTAATAGTACTGTTTTATGAAGCGCAAACATTTTCCGTAAAAGTCTGAATTTCATCGAATCCCGTCGAGACTACAAACATTCACATTGGCATATAGCCTACCCGACAATTGGCAGCCACTCATGTTCGGGCTAATGAGAACGAATTCGAACCTTTTTCCCTCCTCCCGGAACGTTCTATTTTCATACAAGATCTCCATCGTAACGATCTCATTTGATCCTCCTTCATCCATTCTCTTTCCTCTCTTCGAACTAAATGATCTTACGGGGAACTTTATCAAAAAGATAAAGGATCGCTGGCAAGTATGACAGTATATGCGAATTCGTGTTTTTTGCTTTCCCTCCCGTTTCTGTCGCTCTCTTCTTGATCTCTCCACCTCTTGATGTTATATAAAAGTGTGAGTCCATGAGGACGAATGTCCTACTTCCCCAGTGATTGTGTCAAGATATGTCCGAAATTTCTTCTTGCAAT</canonical>
            <polymorphic>GGTACGCACACTTTTTTCTGCTTTTTTTGTGATGCTAAAATATTCACTGGGCCAATTTATGCTCAAGAACTGTGGATACAACCGAATTATTGCTCTGGACATCGAAATCACTTGCAAGAAAAAACAAATTCGGAGCCTTAGCCAATATTCATGCCAAAGACACTCAGAAGCAGAGTTGCAAGGACAATTTCTAAAGATTAATCTCGGCTCCAGTAAAGGCGGCTTTGATTTGAACCCATTTGACTATACCATTTGGGGATACTTGTCCCAGAAGATCTGCACAGAAACCTACCCAAGTTTTTAAGCTTTGAAGGTTGCCTAGAGCAAGAATGGGAGGATTTTCTTCAGCCAAAATTCTGGCTAGAAAGCTTAAAGAGCTTGGTAAAACATGAAATTTCGCAAAGACCCTATTTATGTGCTGCGTACAAAACATCAAGCAGATATCTTCCAAACTAAAATTTAGAGTAAATGTGTTGTTATTTTTTTCATAAATCTCGTAYAGCTTAGCCGCAGGCCCGACTGTTATTCTCTTAATAGTACTGTTTTATGAAGCGCAAACATTTTCCGTAAAAGTCTGAATTTCATCGAATCCCGTCGAGACTACAAACATTCACATTGGCATATAGCCTACCCGACAATTGGCAGCCACTCATGTTCGGGCTAATGAGAACGAATTCGAACCTTTTTCCCTCCTCCCGGAACGTTCTATTTTCATACAAGATCTCCATCGTAACGATCTCATTTGATCCTCCTTCATCCATTCTCTTTCCTCTCTTCGAACTAAATGATCTTACGGGGAACTTTATCAAAAAGATAAAGGATCGCTGGCAAGTATGACAGTATATGCGAATTCGTGTTTTTTGCTTTCCCTCCCGTTTCTGTCGCTCTCTTCTTGATCTCTCCACCTCTTGATGTTATATAAAAGTGTGAGTCCATGAGGACGAATGTCCTACTTCCCCAGTGATTGTGTCAAGATATGTCCGAAATTTCTTCTTGCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAGCTTGGTAAAACATGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCAATGTGAATGTTTGTAGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAGAGCTTGGTAAAACATGAAATTTCGCAAAGACCCTATTTATGTGCTGCGTACAAAACATCAAGCAGATATCTTCCAAACTAAAATTTAGAGTAAATGTGTTGTTATTTTTTTCATAAATCTCGTAGAGCTTAGCCGCAGGCCCGACTGTTATTCTCTTAATAGTACTGTTTTATGAAGCGCAAACATTTTCCGTAAAAGTCTGAATTTCATCGAATCCCGTCGAGACTACAAACATTCACATTGG</canonical_amplicon>
		<polymorphic_amplicon>AAGAGCTTGGTAAAACATGAAATTTCGCAAAGACCCTATTTATGTGCTGCGTACAAAACATCAAGCAGATATCTTCCAAACTAAAATTTAGAGTAAATGTGTTGTTATTTTTTTCATAAATCTCGTAYAGCTTAGCCGCAGGCCCGACTGTTATTCTCTTAATAGTACTGTTTTATGAAGCGCAAACATTTTCCGTAAAAGTCTGAATTTCATCGAATCCCGTCGAGACTACAAACATTCACATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23677</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>234765</contig_pos>
        <strand>+</strand>
        <context>ACCTCTTGAT[G/T]TTATATAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTTCCCTCCCGTTTCTGTCGCTCTCTTCTTGATCTCTCCACCTCTTGAT</left_flank>
        <right_flank>TTATATAAAAGTGTGAGTCCATGAGGACGAATGTCCTACTTCCCCAGTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGCTGCGTACAAAACATCAAGCAGATATCTTCCAAACTAAAATTTAGAGTAAATGTGTTGTTATTTTTTTCATAAATCTCGTAGAGCTTAGCCGCAGGCCCGACTGTTATTCTCTTAATAGTACTGTTTTATGAAGCGCAAACATTTTCCGTAAAAGTCTGAATTTCATCGAATCCCGTCGAGACTACAAACATTCACATTGGCATATAGCCTACCCGACAATTGGCAGCCACTCATGTTCGGGCTAATGAGAACGAATTCGAACCTTTTTCCCTCCTCCCGGAACGTTCTATTTTCATACAAGATCTCCATCGTAACGATCTCATTTGATCCTCCTTCATCCATTCTCTTTCCTCTCTTCGAACTAAATGATCTTACGGGGAACTTTATCAAAAAGATAAAGGATCGCTGGCAAGTATGACAGTATATGCGAATTCGTGTTTTTTGCTTTCCCTCCCGTTTCTGTCGCTCTCTTCTTGATCTCTCCACCTCTTGATGTTATATAAAAGTGTGAGTCCATGAGGACGAATGTCCTACTTCCCCAGTGATTGTGTCAAGATATGTCCGAAATTTCTTCTTGCAATCCTTTTTATTTCTGGATTGTTTCATTTTGGAGATGTATGCTTAGCTACATCACCTGGTGGTAGTCCGACAGTTCCTAGTTCTACAGTTATACCGCCAACCCGTTCTACTACTGAAACGCCAACCAGTTCTATTAGGTTGGCGGGAAAGTCTTTGTCACTTTTTCAATAGTTTATTTCTCAAAGAAAAAATAACCGAATAATTAATTATATTGTCCATCATTATCAACAACATGTCTCCAACGTTCCCTCAATTTATGGATTCCATTGCGGTAGAATCCAGCCGGGCGTGAGGCAAAGTATTGTTTGAGTGCCGCTTCGACCGCTCCACGGGAATTGAAGCTTCTTCCTTCGAAGGCACGTGTCATATCGCCAAATAACCAATAGTCGGAAGGAGCAAGATCAGGAGAATACGGG</canonical>
            <polymorphic>TGTGCTGCGTACAAAACATCAAGCAGATATCTTCCAAACTAAAATTTAGAGTAAATGTGTTGTTATTTTTTTCATAAATCTCGTAGAGCTTAGCCGCAGGCCCGACTGTTATTCTCTTAATAGTACTGTTTTATGAAGCGCAAACATTTTCCGTAAAAGTCTGAATTTCATCGAATCCCGTCGAGACTACAAACATTCACATTGGCATATAGCCTACCCGACAATTGGCAGCCACTCATGTTCGGGCTAATGAGAACGAATTCGAACCTTTTTCCCTCCTCCCGGAACGTTCTATTTTCATACAAGATCTCCATCGTAACGATCTCATTTGATCCTCCTTCATCCATTCTCTTTCCTCTCTTCGAACTAAATGATCTTACGGGGAACTTTATCAAAAAGATAAAGGATCGCTGGCAAGTATGACAGTATATGCGAATTCGTGTTTTTTGCTTTCCCTCCCGTTTCTGTCGCTCTCTTCTTGATCTCTCCACCTCTTGATKTTATATAAAAGTGTGAGTCCATGAGGACGAATGTCCTACTTCCCCAGTGATTGTGTCAAGATATGTCCGAAATTTCTTCTTGCAATCCTTTTTATTTCTGGATTGTTTCATTTTGGAGATGTATGCTTAGCTACATCACCTGGTGGTAGTCCGACAGTTCCTAGTTCTACAGTTATACCGCCAACCCGTTCTACTACTGAAACGCCAACCAGTTCTATTAGGTTGGCGGGAAAGTCTTTGTCACTTTTTCAATAGTTTATTTCTCAAAGAAAAAATAACCGAATAATTAATTATATTGTCCATCATTATCAACAACATGTCTCCAACGTTCCCTCAATTTATGGATTCCATTGCGGTAGAATCCAGCCGGGCGTGAGGCAAAGTATTGTTTGAGTGCCGCTTCGACCGCTCCACGGGAATTGAAGCTTCTTCCTTCGAAGGCACGTGTCATATCGCCAAATAACCAATAGTCGGAAGGAGCAAGATCAGGAGAATACGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTCGAACTAAATGATCTTACG</pcr_primer_p1>
		<pcr_primer_p2>AACAATCCAGAAATAAAAAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTTCGAACTAAATGATCTTACGGGGAACTTTATCAAAAAGATAAAGGATCGCTGGCAAGTATGACAGTATATGCGAATTCGTGTTTTTTGCTTTCCCTCCCGTTTCTGTCGCTCTCTTCTTGATCTCTCCACCTCTTGATGTTATATAAAAGTGTGAGTCCATGAGGACGAATGTCCTACTTCCCCAGTGATTGTGTCAAGATATGTCCGAAATTTCTTCTTGCAATCCTTTTTATTTCTGGATTGTT</canonical_amplicon>
		<polymorphic_amplicon>TCTTCGAACTAAATGATCTTACGGGGAACTTTATCAAAAAGATAAAGGATCGCTGGCAAGTATGACAGTATATGCGAATTCGTGTTTTTTGCTTTCCCTCCCGTTTCTGTCGCTCTCTTCTTGATCTCTCCACCTCTTGATKTTATATAAAAGTGTGAGTCCATGAGGACGAATGTCCTACTTCCCCAGTGATTGTGTCAAGATATGTCCGAAATTTCTTCTTGCAATCCTTTTTATTTCTGGATTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23678</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>234824</contig_pos>
        <strand>+</strand>
        <context>GATTGTGTCA[A/T]GATATGTCCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGTGTGAGTCCATGAGGACGAATGTCCTACTTCCCCAGTGATTGTGTCA</left_flank>
        <right_flank>GATATGTCCGAAATTTCTTCTTGCAATCCTTTTTATTTCTGGATTGTTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTATTTTTTTCATAAATCTCGTAGAGCTTAGCCGCAGGCCCGACTGTTATTCTCTTAATAGTACTGTTTTATGAAGCGCAAACATTTTCCGTAAAAGTCTGAATTTCATCGAATCCCGTCGAGACTACAAACATTCACATTGGCATATAGCCTACCCGACAATTGGCAGCCACTCATGTTCGGGCTAATGAGAACGAATTCGAACCTTTTTCCCTCCTCCCGGAACGTTCTATTTTCATACAAGATCTCCATCGTAACGATCTCATTTGATCCTCCTTCATCCATTCTCTTTCCTCTCTTCGAACTAAATGATCTTACGGGGAACTTTATCAAAAAGATAAAGGATCGCTGGCAAGTATGACAGTATATGCGAATTCGTGTTTTTTGCTTTCCCTCCCGTTTCTGTCGCTCTCTTCTTGATCTCTCCACCTCTTGATGTTATATAAAAGTGTGAGTCCATGAGGACGAATGTCCTACTTCCCCAGTGATTGTGTCAAGATATGTCCGAAATTTCTTCTTGCAATCCTTTTTATTTCTGGATTGTTTCATTTTGGAGATGTATGCTTAGCTACATCACCTGGTGGTAGTCCGACAGTTCCTAGTTCTACAGTTATACCGCCAACCCGTTCTACTACTGAAACGCCAACCAGTTCTATTAGGTTGGCGGGAAAGTCTTTGTCACTTTTTCAATAGTTTATTTCTCAAAGAAAAAATAACCGAATAATTAATTATATTGTCCATCATTATCAACAACATGTCTCCAACGTTCCCTCAATTTATGGATTCCATTGCGGTAGAATCCAGCCGGGCGTGAGGCAAAGTATTGTTTGAGTGCCGCTTCGACCGCTCCACGGGAATTGAAGCTTCTTCCTTCGAAGGCACGTGTCATATCGCCAAATAACCAATAGTCGGAAGGAGCAAGATCAGGAGAATACGGGGGGTGAGGGAGAACATTCCATCCATTCCCATCAGCTCCTGCTTCACTTGTTTCGAAACA</canonical>
            <polymorphic>TTGTTATTTTTTTCATAAATCTCGTAGAGCTTAGCCGCAGGCCCGACTGTTATTCTCTTAATAGTACTGTTTTATGAAGCGCAAACATTTTCCGTAAAAGTCTGAATTTCATCGAATCCCGTCGAGACTACAAACATTCACATTGGCATATAGCCTACCCGACAATTGGCAGCCACTCATGTTCGGGCTAATGAGAACGAATTCGAACCTTTTTCCCTCCTCCCGGAACGTTCTATTTTCATACAAGATCTCCATCGTAACGATCTCATTTGATCCTCCTTCATCCATTCTCTTTCCTCTCTTCGAACTAAATGATCTTACGGGGAACTTTATCAAAAAGATAAAGGATCGCTGGCAAGTATGACAGTATATGCGAATTCGTGTTTTTTGCTTTCCCTCCCGTTTCTGTCGCTCTCTTCTTGATCTCTCCACCTCTTGATGTTATATAAAAGTGTGAGTCCATGAGGACGAATGTCCTACTTCCCCAGTGATTGTGTCAWGATATGTCCGAAATTTCTTCTTGCAATCCTTTTTATTTCTGGATTGTTTCATTTTGGAGATGTATGCTTAGCTACATCACCTGGTGGTAGTCCGACAGTTCCTAGTTCTACAGTTATACCGCCAACCCGTTCTACTACTGAAACGCCAACCAGTTCTATTAGGTTGGCGGGAAAGTCTTTGTCACTTTTTCAATAGTTTATTTCTCAAAGAAAAAATAACCGAATAATTAATTATATTGTCCATCATTATCAACAACATGTCTCCAACGTTCCCTCAATTTATGGATTCCATTGCGGTAGAATCCAGCCGGGCGTGAGGCAAAGTATTGTTTGAGTGCCGCTTCGACCGCTCCACGGGAATTGAAGCTTCTTCCTTCGAAGGCACGTGTCATATCGCCAAATAACCAATAGTCGGAAGGAGCAAGATCAGGAGAATACGGGGGGTGAGGGAGAACATTCCATCCATTCCCATCAGCTCCTGCTTCACTTGTTTCGAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTTACGGGGAACTTTATCA</pcr_primer_p1>
		<pcr_primer_p2>TACATCTCCAAAATGAAACAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTTACGGGGAACTTTATCAAAAAGATAAAGGATCGCTGGCAAGTATGACAGTATATGCGAATTCGTGTTTTTTGCTTTCCCTCCCGTTTCTGTCGCTCTCTTCTTGATCTCTCCACCTCTTGATGTTATATAAAAGTGTGAGTCCATGAGGACGAATGTCCTACTTCCCCAGTGATTGTGTCAAGATATGTCCGAAATTTCTTCTTGCAATCCTTTTTATTTCTGGATTGTTTCATTTTGGAGATGTA</canonical_amplicon>
		<polymorphic_amplicon>ATCTTACGGGGAACTTTATCAAAAAGATAAAGGATCGCTGGCAAGTATGACAGTATATGCGAATTCGTGTTTTTTGCTTTCCCTCCCGTTTCTGTCGCTCTCTTCTTGATCTCTCCACCTCTTGATGTTATATAAAAGTGTGAGTCCATGAGGACGAATGTCCTACTTCCCCAGTGATTGTGTCAWGATATGTCCGAAATTTCTTCTTGCAATCCTTTTTATTTCTGGATTGTTTCATTTTGGAGATGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23680</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>240100</contig_pos>
        <strand></strand>
        <context>CCTCCCACTT[G/T]KATGGTACAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGTTTTTTCATCTAACTTTTTTTGCACCCCATATATTCTCCTCCCACTT</left_flank>
        <right_flank>GATGGTACATTACATTAATTTGAGTCCGGTAAAACACATTTACACGCTTC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGAAAAGTAAGATCTGTTGTATGGGGACAGCTGAACAATACTGGATTTTGCCTGCAGGTGGGATTAAGGATGATCGCAGGGAGTACGTTGGGTTTCTGTATGAAATAACTTTCGAACTTCTAGAAGGAACATTACTTAAAATTACACAAACGCAGAATCTGCGAGATAATCATTTTCGAATATACATATGTCTTTACTGAGAAGATAGTAAGTTTTCGCTCCATCACCACGGGGTGTATTCCACTATCCTGATAATTTCTGATCCTGCCATTGTGTCAGTAGTTCGCTCAATCCTTCAAACGAAACCTGTTTCCTTATCAGATGCCTTTTGATCTAATGATTCGTTTGGATCTTCACTATCTCCTTCGTTCGATACCGTCATCCCAAAGATCTCGTCCACTGTCACGCCGAAACAACAGAGACTTATAGGGATCGAAGATGCAGAAAGTGTTTTTTCATCTAACTTTTTTTGCACCCCATATATTCTCCTCCCACTTGGATGGTACATTACATTAATTTGAGTCCGGTAAAACACATTTACACGCTTCCAAGTGTGACATCAGATCGTCAAGAGCTTTACTTTATTCAATGGTGTTTTCCTTTTTTGATCTTATTCTTATGGTGGAGGCATGCATGGCATCGTCTCCTATCTCGGGGCCGGTTGTAACTCCAACGACCACAACAAACGCAGATACTTCAACCATTACTTCCTCTACTACCTCCACGACTACAACCACGACTACCACTACCACACCACCTCATGTAGTCTTGAGTAATTTTTACACTGCGCGCCATAATTATAGAGCCACTTCAATTTTTGTAATTTTTCTGATATCCATGAAAGTTCCAGAATCCTTTCCAATGGTGATAAATATCATTTTTGAATCTGAAAATGTAGAGAACATTCAATTATAGATAGTGAAGCAACGGTTTGAAAAAAATGAAAAAATGTGCCACTTCAAAAATCATCATCACAATTTGTTCACTGTAAAAAGCAG</canonical>
            <polymorphic>CAAGAAAAGTAAGATCTGTTGTATGGGGACAGCTGAACAATACTGGATTTTGCCTGCAGGTGGGATTAAGGATGATCGCAGGGAGTACGTTGGGTTTCTGTATGAAATAACTTTCGAACTTCTAGAAGGAACATTACTTAAAATTACACAAACGCAGAATCTGCGAGATAATCATTTTCGAATATACATATGTCTTTACTGAGAAGATAGTAAGTTTTCGCTCCATCACCACGGGGTGTATTCCACTATCCTGATAATTTCTGATCCTGCCATTGTGTCAGTAGTTCGCTCAATCCTTCAAACGAAACCTGTTTCCTTATCAGATGCCTTTTGATCTAATGATTCGTTTGGATCTTCACTATCTCCTTCGTTCGATACCGTCATCCCAAAGATCTCGTCCACTGTCACGCCGAAACAACAGAGACTTATAGGGATCGAAGATGCAGAAAGTGTTTTTTCATCTAACTTTTTTTGCACCCCATATATTCTCCTCCCACTTKGATGGTACATTACATTAATTTGAGTCCGGTAAAACACATTTACACGCTTCCAAGTGTGACATCAGATCGTCAAGAGCTTTACTTTATTCAATGGTGTTTTCCTTTTTTGATCTTATTCTTATGGTGGAGGCATGCATGGCATCGTCTCCTATCTCGGGGCCGGTTGTAACTCCAACGACCACAACAAACGCAGATACTTCAACCATTACTTCCTCTACTACCTCCACGACTACAACCACGACTACCACTACCACACCACCTCATGTAGTCTTGAGTAATTTTTACACTGCGCGCCATAATTATAGAGCCACTTCAATTTTTGTAATTTTTCTGATATCCATGAAAGTTCCAGAATCCTTTCCAATGGTGATAAATATCATTTTTGAATCTGAAAATGTAGAGAACATTCAATTATAGATAGTGAAGCAACGGTTTGAAAAAAATGAAAAAATGTGCCACTTCAAAAATCATCATCACAATTTGTTCACTGTAAAAAGCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTAATGATTCGTTTGGATCTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTAAAGCTCTTGACGATCTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATCTAATGATTCGTTTGGATCTTCACTATCTCCTTCGTTCGATACCGTCATCCCAAAGATCTCGTCCACTGTCACGCCGAAACAACAGAGACTTATAGGGATCGAAGATGCAGAAAGTGTTTTTTCATCTAACTTTTTTTGCACCCCATATATTCTCCTCCCACTTGGATGGTACATTACATTAATTTGAGTCCGGTAAAACACATTTACACGCTTCCAAGTGTGACATCAGATCGTCAAGAGCTTTACTT</canonical_amplicon>
		<polymorphic_amplicon>ATCTAATGATTCGTTTGGATCTTCACTATCTCCTTCGTTCGATACCGTCATCCCAAAGATCTCGTCCACTGTCACGCCGAAACAACAGAGACTTATAGGGATCGAAGATGCAGAAAGTGTTTTTTCATCTAACTTTTTTTGCACCCCATATATTCTCCTCCCACTTKGATGGTACATTACATTAATTTGAGTCCGGTAAAACACATTTACACGCTTCCAAGTGTGACATCAGATCGTCAAGAGCTTTACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23681</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>240101</contig_pos>
        <strand>+</strand>
        <context>CTCCCACTTK[G/T]ATGGTACATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTTTTTTCATCTAACTTTTTTTGCACCCCATATATTCTCCTCCCACTTG</left_flank>
        <right_flank>ATGGTACATTACATTAATTTGAGTCCGGTAAAACACATTTACACGCTTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAAAGTAAGATCTGTTGTATGGGGACAGCTGAACAATACTGGATTTTGCCTGCAGGTGGGATTAAGGATGATCGCAGGGAGTACGTTGGGTTTCTGTATGAAATAACTTTCGAACTTCTAGAAGGAACATTACTTAAAATTACACAAACGCAGAATCTGCGAGATAATCATTTTCGAATATACATATGTCTTTACTGAGAAGATAGTAAGTTTTCGCTCCATCACCACGGGGTGTATTCCACTATCCTGATAATTTCTGATCCTGCCATTGTGTCAGTAGTTCGCTCAATCCTTCAAACGAAACCTGTTTCCTTATCAGATGCCTTTTGATCTAATGATTCGTTTGGATCTTCACTATCTCCTTCGTTCGATACCGTCATCCCAAAGATCTCGTCCACTGTCACGCCGAAACAACAGAGACTTATAGGGATCGAAGATGCAGAAAGTGTTTTTTCATCTAACTTTTTTTGCACCCCATATATTCTCCTCCCACTTGGATGGTACATTACATTAATTTGAGTCCGGTAAAACACATTTACACGCTTCCAAGTGTGACATCAGATCGTCAAGAGCTTTACTTTATTCAATGGTGTTTTCCTTTTTTGATCTTATTCTTATGGTGGAGGCATGCATGGCATCGTCTCCTATCTCGGGGCCGGTTGTAACTCCAACGACCACAACAAACGCAGATACTTCAACCATTACTTCCTCTACTACCTCCACGACTACAACCACGACTACCACTACCACACCACCTCATGTAGTCTTGAGTAATTTTTACACTGCGCGCCATAATTATAGAGCCACTTCAATTTTTGTAATTTTTCTGATATCCATGAAAGTTCCAGAATCCTTTCCAATGGTGATAAATATCATTTTTGAATCTGAAAATGTAGAGAACATTCAATTATAGATAGTGAAGCAACGGTTTGAAAAAAATGAAAAAATGTGCCACTTCAAAAATCATCATCACAATTTGTTCACTGTAAAAAGCAGA</canonical>
            <polymorphic>AAGAAAAGTAAGATCTGTTGTATGGGGACAGCTGAACAATACTGGATTTTGCCTGCAGGTGGGATTAAGGATGATCGCAGGGAGTACGTTGGGTTTCTGTATGAAATAACTTTCGAACTTCTAGAAGGAACATTACTTAAAATTACACAAACGCAGAATCTGCGAGATAATCATTTTCGAATATACATATGTCTTTACTGAGAAGATAGTAAGTTTTCGCTCCATCACCACGGGGTGTATTCCACTATCCTGATAATTTCTGATCCTGCCATTGTGTCAGTAGTTCGCTCAATCCTTCAAACGAAACCTGTTTCCTTATCAGATGCCTTTTGATCTAATGATTCGTTTGGATCTTCACTATCTCCTTCGTTCGATACCGTCATCCCAAAGATCTCGTCCACTGTCACGCCGAAACAACAGAGACTTATAGGGATCGAAGATGCAGAAAGTGTTTTTTCATCTAACTTTTTTTGCACCCCATATATTCTCCTCCCACTTGKATGGTACATTACATTAATTTGAGTCCGGTAAAACACATTTACACGCTTCCAAGTGTGACATCAGATCGTCAAGAGCTTTACTTTATTCAATGGTGTTTTCCTTTTTTGATCTTATTCTTATGGTGGAGGCATGCATGGCATCGTCTCCTATCTCGGGGCCGGTTGTAACTCCAACGACCACAACAAACGCAGATACTTCAACCATTACTTCCTCTACTACCTCCACGACTACAACCACGACTACCACTACCACACCACCTCATGTAGTCTTGAGTAATTTTTACACTGCGCGCCATAATTATAGAGCCACTTCAATTTTTGTAATTTTTCTGATATCCATGAAAGTTCCAGAATCCTTTCCAATGGTGATAAATATCATTTTTGAATCTGAAAATGTAGAGAACATTCAATTATAGATAGTGAAGCAACGGTTTGAAAAAAATGAAAAAATGTGCCACTTCAAAAATCATCATCACAATTTGTTCACTGTAAAAAGCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTAATGATTCGTTTGGATCTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTAAAGCTCTTGACGATCTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATCTAATGATTCGTTTGGATCTTCACTATCTCCTTCGTTCGATACCGTCATCCCAAAGATCTCGTCCACTGTCACGCCGAAACAACAGAGACTTATAGGGATCGAAGATGCAGAAAGTGTTTTTTCATCTAACTTTTTTTGCACCCCATATATTCTCCTCCCACTTGGATGGTACATTACATTAATTTGAGTCCGGTAAAACACATTTACACGCTTCCAAGTGTGACATCAGATCGTCAAGAGCTTTACTT</canonical_amplicon>
		<polymorphic_amplicon>ATCTAATGATTCGTTTGGATCTTCACTATCTCCTTCGTTCGATACCGTCATCCCAAAGATCTCGTCCACTGTCACGCCGAAACAACAGAGACTTATAGGGATCGAAGATGCAGAAAGTGTTTTTTCATCTAACTTTTTTTGCACCCCATATATTCTCCTCCCACTTGKATGGTACATTACATTAATTTGAGTCCGGTAAAACACATTTACACGCTTCCAAGTGTGACATCAGATCGTCAAGAGCTTTACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23682</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>240121</contig_pos>
        <strand></strand>
        <context>TACATTAATT[T/C]YAGTCCGGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTGCACCCCATATATTCTCCTCCCACTTGGATGGTACATTACATTAATT</left_flank>
        <right_flank>GAGTCCGGTAAAACACATTTACACGCTTCCAAGTGTGACATCAGATCGTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGGGGACAGCTGAACAATACTGGATTTTGCCTGCAGGTGGGATTAAGGATGATCGCAGGGAGTACGTTGGGTTTCTGTATGAAATAACTTTCGAACTTCTAGAAGGAACATTACTTAAAATTACACAAACGCAGAATCTGCGAGATAATCATTTTCGAATATACATATGTCTTTACTGAGAAGATAGTAAGTTTTCGCTCCATCACCACGGGGTGTATTCCACTATCCTGATAATTTCTGATCCTGCCATTGTGTCAGTAGTTCGCTCAATCCTTCAAACGAAACCTGTTTCCTTATCAGATGCCTTTTGATCTAATGATTCGTTTGGATCTTCACTATCTCCTTCGTTCGATACCGTCATCCCAAAGATCTCGTCCACTGTCACGCCGAAACAACAGAGACTTATAGGGATCGAAGATGCAGAAAGTGTTTTTTCATCTAACTTTTTTTGCACCCCATATATTCTCCTCCCACTTGGATGGTACATTACATTAATTTGAGTCCGGTAAAACACATTTACACGCTTCCAAGTGTGACATCAGATCGTCAAGAGCTTTACTTTATTCAATGGTGTTTTCCTTTTTTGATCTTATTCTTATGGTGGAGGCATGCATGGCATCGTCTCCTATCTCGGGGCCGGTTGTAACTCCAACGACCACAACAAACGCAGATACTTCAACCATTACTTCCTCTACTACCTCCACGACTACAACCACGACTACCACTACCACACCACCTCATGTAGTCTTGAGTAATTTTTACACTGCGCGCCATAATTATAGAGCCACTTCAATTTTTGTAATTTTTCTGATATCCATGAAAGTTCCAGAATCCTTTCCAATGGTGATAAATATCATTTTTGAATCTGAAAATGTAGAGAACATTCAATTATAGATAGTGAAGCAACGGTTTGAAAAAAATGAAAAAATGTGCCACTTCAAAAATCATCATCACAATTTGTTCACTGTAAAAAGCAGATATTCAAATATTCCACTAGA</canonical>
            <polymorphic>TATGGGGACAGCTGAACAATACTGGATTTTGCCTGCAGGTGGGATTAAGGATGATCGCAGGGAGTACGTTGGGTTTCTGTATGAAATAACTTTCGAACTTCTAGAAGGAACATTACTTAAAATTACACAAACGCAGAATCTGCGAGATAATCATTTTCGAATATACATATGTCTTTACTGAGAAGATAGTAAGTTTTCGCTCCATCACCACGGGGTGTATTCCACTATCCTGATAATTTCTGATCCTGCCATTGTGTCAGTAGTTCGCTCAATCCTTCAAACGAAACCTGTTTCCTTATCAGATGCCTTTTGATCTAATGATTCGTTTGGATCTTCACTATCTCCTTCGTTCGATACCGTCATCCCAAAGATCTCGTCCACTGTCACGCCGAAACAACAGAGACTTATAGGGATCGAAGATGCAGAAAGTGTTTTTTCATCTAACTTTTTTTGCACCCCATATATTCTCCTCCCACTTGGATGGTACATTACATTAATTYGAGTCCGGTAAAACACATTTACACGCTTCCAAGTGTGACATCAGATCGTCAAGAGCTTTACTTTATTCAATGGTGTTTTCCTTTTTTGATCTTATTCTTATGGTGGAGGCATGCATGGCATCGTCTCCTATCTCGGGGCCGGTTGTAACTCCAACGACCACAACAAACGCAGATACTTCAACCATTACTTCCTCTACTACCTCCACGACTACAACCACGACTACCACTACCACACCACCTCATGTAGTCTTGAGTAATTTTTACACTGCGCGCCATAATTATAGAGCCACTTCAATTTTTGTAATTTTTCTGATATCCATGAAAGTTCCAGAATCCTTTCCAATGGTGATAAATATCATTTTTGAATCTGAAAATGTAGAGAACATTCAATTATAGATAGTGAAGCAACGGTTTGAAAAAAATGAAAAAATGTGCCACTTCAAAAATCATCATCACAATTTGTTCACTGTAAAAAGCAGATATTCAAATATTCCACTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTAATGATTCGTTTGGATCTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTAAAGCTCTTGACGATCTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATCTAATGATTCGTTTGGATCTTCACTATCTCCTTCGTTCGATACCGTCATCCCAAAGATCTCGTCCACTGTCACGCCGAAACAACAGAGACTTATAGGGATCGAAGATGCAGAAAGTGTTTTTTCATCTAACTTTTTTTGCACCCCATATATTCTCCTCCCACTTGGATGGTACATTACATTAATTTGAGTCCGGTAAAACACATTTACACGCTTCCAAGTGTGACATCAGATCGTCAAGAGCTTTACTT</canonical_amplicon>
		<polymorphic_amplicon>ATCTAATGATTCGTTTGGATCTTCACTATCTCCTTCGTTCGATACCGTCATCCCAAAGATCTCGTCCACTGTCACGCCGAAACAACAGAGACTTATAGGGATCGAAGATGCAGAAAGTGTTTTTTCATCTAACTTTTTTTGCACCCCATATATTCTCCTCCCACTTGGATGGTACATTACATTAATTYGAGTCCGGTAAAACACATTTACACGCTTCCAAGTGTGACATCAGATCGTCAAGAGCTTTACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23683</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>240122</contig_pos>
        <strand>+</strand>
        <context>ACATTAATTY[C/T]AGTCCGGTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGCACCCCATATATTCTCCTCCCACTTGGATGGTACATTACATTAATTT</left_flank>
        <right_flank>AGTCCGGTAAAACACATTTACACGCTTCCAAGTGTGACATCAGATCGTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGGGACAGCTGAACAATACTGGATTTTGCCTGCAGGTGGGATTAAGGATGATCGCAGGGAGTACGTTGGGTTTCTGTATGAAATAACTTTCGAACTTCTAGAAGGAACATTACTTAAAATTACACAAACGCAGAATCTGCGAGATAATCATTTTCGAATATACATATGTCTTTACTGAGAAGATAGTAAGTTTTCGCTCCATCACCACGGGGTGTATTCCACTATCCTGATAATTTCTGATCCTGCCATTGTGTCAGTAGTTCGCTCAATCCTTCAAACGAAACCTGTTTCCTTATCAGATGCCTTTTGATCTAATGATTCGTTTGGATCTTCACTATCTCCTTCGTTCGATACCGTCATCCCAAAGATCTCGTCCACTGTCACGCCGAAACAACAGAGACTTATAGGGATCGAAGATGCAGAAAGTGTTTTTTCATCTAACTTTTTTTGCACCCCATATATTCTCCTCCCACTTGGATGGTACATTACATTAATTTGAGTCCGGTAAAACACATTTACACGCTTCCAAGTGTGACATCAGATCGTCAAGAGCTTTACTTTATTCAATGGTGTTTTCCTTTTTTGATCTTATTCTTATGGTGGAGGCATGCATGGCATCGTCTCCTATCTCGGGGCCGGTTGTAACTCCAACGACCACAACAAACGCAGATACTTCAACCATTACTTCCTCTACTACCTCCACGACTACAACCACGACTACCACTACCACACCACCTCATGTAGTCTTGAGTAATTTTTACACTGCGCGCCATAATTATAGAGCCACTTCAATTTTTGTAATTTTTCTGATATCCATGAAAGTTCCAGAATCCTTTCCAATGGTGATAAATATCATTTTTGAATCTGAAAATGTAGAGAACATTCAATTATAGATAGTGAAGCAACGGTTTGAAAAAAATGAAAAAATGTGCCACTTCAAAAATCATCATCACAATTTGTTCACTGTAAAAAGCAGATATTCAAATATTCCACTAGAA</canonical>
            <polymorphic>ATGGGGACAGCTGAACAATACTGGATTTTGCCTGCAGGTGGGATTAAGGATGATCGCAGGGAGTACGTTGGGTTTCTGTATGAAATAACTTTCGAACTTCTAGAAGGAACATTACTTAAAATTACACAAACGCAGAATCTGCGAGATAATCATTTTCGAATATACATATGTCTTTACTGAGAAGATAGTAAGTTTTCGCTCCATCACCACGGGGTGTATTCCACTATCCTGATAATTTCTGATCCTGCCATTGTGTCAGTAGTTCGCTCAATCCTTCAAACGAAACCTGTTTCCTTATCAGATGCCTTTTGATCTAATGATTCGTTTGGATCTTCACTATCTCCTTCGTTCGATACCGTCATCCCAAAGATCTCGTCCACTGTCACGCCGAAACAACAGAGACTTATAGGGATCGAAGATGCAGAAAGTGTTTTTTCATCTAACTTTTTTTGCACCCCATATATTCTCCTCCCACTTGGATGGTACATTACATTAATTTYAGTCCGGTAAAACACATTTACACGCTTCCAAGTGTGACATCAGATCGTCAAGAGCTTTACTTTATTCAATGGTGTTTTCCTTTTTTGATCTTATTCTTATGGTGGAGGCATGCATGGCATCGTCTCCTATCTCGGGGCCGGTTGTAACTCCAACGACCACAACAAACGCAGATACTTCAACCATTACTTCCTCTACTACCTCCACGACTACAACCACGACTACCACTACCACACCACCTCATGTAGTCTTGAGTAATTTTTACACTGCGCGCCATAATTATAGAGCCACTTCAATTTTTGTAATTTTTCTGATATCCATGAAAGTTCCAGAATCCTTTCCAATGGTGATAAATATCATTTTTGAATCTGAAAATGTAGAGAACATTCAATTATAGATAGTGAAGCAACGGTTTGAAAAAAATGAAAAAATGTGCCACTTCAAAAATCATCATCACAATTTGTTCACTGTAAAAAGCAGATATTCAAATATTCCACTAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>330 184 181 137 135 33</canonical_bands>
                <polymorphic_bands>511 184 137 135 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTAATGATTCGTTTGGATCTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTAAAGCTCTTGACGATCTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATCTAATGATTCGTTTGGATCTTCACTATCTCCTTCGTTCGATACCGTCATCCCAAAGATCTCGTCCACTGTCACGCCGAAACAACAGAGACTTATAGGGATCGAAGATGCAGAAAGTGTTTTTTCATCTAACTTTTTTTGCACCCCATATATTCTCCTCCCACTTGGATGGTACATTACATTAATTTGAGTCCGGTAAAACACATTTACACGCTTCCAAGTGTGACATCAGATCGTCAAGAGCTTTACTT</canonical_amplicon>
		<polymorphic_amplicon>ATCTAATGATTCGTTTGGATCTTCACTATCTCCTTCGTTCGATACCGTCATCCCAAAGATCTCGTCCACTGTCACGCCGAAACAACAGAGACTTATAGGGATCGAAGATGCAGAAAGTGTTTTTTCATCTAACTTTTTTTGCACCCCATATATTCTCCTCCCACTTGGATGGTACATTACATTAATTTYAGTCCGGTAAAACACATTTACACGCTTCCAAGTGTGACATCAGATCGTCAAGAGCTTTACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23684</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>240142</contig_pos>
        <strand>+</strand>
        <context>AAACACATTT[A/C]CACGCTTCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCCACTTGGATGGTACATTACATTAATTTGAGTCCGGTAAAACACATTT</left_flank>
        <right_flank>CACGCTTCCAAGTGTGACATCAGATCGTCAAGAGCTTTACTTTATTCAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGATTTTGCCTGCAGGTGGGATTAAGGATGATCGCAGGGAGTACGTTGGGTTTCTGTATGAAATAACTTTCGAACTTCTAGAAGGAACATTACTTAAAATTACACAAACGCAGAATCTGCGAGATAATCATTTTCGAATATACATATGTCTTTACTGAGAAGATAGTAAGTTTTCGCTCCATCACCACGGGGTGTATTCCACTATCCTGATAATTTCTGATCCTGCCATTGTGTCAGTAGTTCGCTCAATCCTTCAAACGAAACCTGTTTCCTTATCAGATGCCTTTTGATCTAATGATTCGTTTGGATCTTCACTATCTCCTTCGTTCGATACCGTCATCCCAAAGATCTCGTCCACTGTCACGCCGAAACAACAGAGACTTATAGGGATCGAAGATGCAGAAAGTGTTTTTTCATCTAACTTTTTTTGCACCCCATATATTCTCCTCCCACTTGGATGGTACATTACATTAATTTGAGTCCGGTAAAACACATTTACACGCTTCCAAGTGTGACATCAGATCGTCAAGAGCTTTACTTTATTCAATGGTGTTTTCCTTTTTTGATCTTATTCTTATGGTGGAGGCATGCATGGCATCGTCTCCTATCTCGGGGCCGGTTGTAACTCCAACGACCACAACAAACGCAGATACTTCAACCATTACTTCCTCTACTACCTCCACGACTACAACCACGACTACCACTACCACACCACCTCATGTAGTCTTGAGTAATTTTTACACTGCGCGCCATAATTATAGAGCCACTTCAATTTTTGTAATTTTTCTGATATCCATGAAAGTTCCAGAATCCTTTCCAATGGTGATAAATATCATTTTTGAATCTGAAAATGTAGAGAACATTCAATTATAGATAGTGAAGCAACGGTTTGAAAAAAATGAAAAAATGTGCCACTTCAAAAATCATCATCACAATTTGTTCACTGTAAAAAGCAGATATTCAAATATTCCACTAGAAATTGATATTTCCAAAGCAAT</canonical>
            <polymorphic>CTGGATTTTGCCTGCAGGTGGGATTAAGGATGATCGCAGGGAGTACGTTGGGTTTCTGTATGAAATAACTTTCGAACTTCTAGAAGGAACATTACTTAAAATTACACAAACGCAGAATCTGCGAGATAATCATTTTCGAATATACATATGTCTTTACTGAGAAGATAGTAAGTTTTCGCTCCATCACCACGGGGTGTATTCCACTATCCTGATAATTTCTGATCCTGCCATTGTGTCAGTAGTTCGCTCAATCCTTCAAACGAAACCTGTTTCCTTATCAGATGCCTTTTGATCTAATGATTCGTTTGGATCTTCACTATCTCCTTCGTTCGATACCGTCATCCCAAAGATCTCGTCCACTGTCACGCCGAAACAACAGAGACTTATAGGGATCGAAGATGCAGAAAGTGTTTTTTCATCTAACTTTTTTTGCACCCCATATATTCTCCTCCCACTTGGATGGTACATTACATTAATTTGAGTCCGGTAAAACACATTTMCACGCTTCCAAGTGTGACATCAGATCGTCAAGAGCTTTACTTTATTCAATGGTGTTTTCCTTTTTTGATCTTATTCTTATGGTGGAGGCATGCATGGCATCGTCTCCTATCTCGGGGCCGGTTGTAACTCCAACGACCACAACAAACGCAGATACTTCAACCATTACTTCCTCTACTACCTCCACGACTACAACCACGACTACCACTACCACACCACCTCATGTAGTCTTGAGTAATTTTTACACTGCGCGCCATAATTATAGAGCCACTTCAATTTTTGTAATTTTTCTGATATCCATGAAAGTTCCAGAATCCTTTCCAATGGTGATAAATATCATTTTTGAATCTGAAAATGTAGAGAACATTCAATTATAGATAGTGAAGCAACGGTTTGAAAAAAATGAAAAAATGTGCCACTTCAAAAATCATCATCACAATTTGTTCACTGTAAAAAGCAGATATTCAAATATTCCACTAGAAATTGATATTTCCAAAGCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATCTCCTTCGTTCGATACC</pcr_primer_p1>
		<pcr_primer_p2>GGAAAACACCATTGAATAAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CTATCTCCTTCGTTCGATACCGTCATCCCAAAGATCTCGTCCACTGTCACGCCGAAACAACAGAGACTTATAGGGATCGAAGATGCAGAAAGTGTTTTTTCATCTAACTTTTTTTGCACCCCATATATTCTCCTCCCACTTGGATGGTACATTACATTAATTTGAGTCCGGTAAAACACATTTACACGCTTCCAAGTGTGACATCAGATCGTCAAGAGCTTTACTTTATTCAATGGTGTTTTCC</canonical_amplicon>
		<polymorphic_amplicon>CTATCTCCTTCGTTCGATACCGTCATCCCAAAGATCTCGTCCACTGTCACGCCGAAACAACAGAGACTTATAGGGATCGAAGATGCAGAAAGTGTTTTTTCATCTAACTTTTTTTGCACCCCATATATTCTCCTCCCACTTGGATGGTACATTACATTAATTTGAGTCCGGTAAAACACATTTMCACGCTTCCAAGTGTGACATCAGATCGTCAAGAGCTTTACTTTATTCAATGGTGTTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23685</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>240241</contig_pos>
        <strand>+</strand>
        <context>CATGCATGGC[A/G]TCGTCTCCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGGTGTTTTCCTTTTTTGATCTTATTCTTATGGTGGAGGCATGCATGGC</left_flank>
        <right_flank>TCGTCTCCTATCTCGGGGCCGGTTGTAACTCCAACGACCACAACAAACGC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTACACAAACGCAGAATCTGCGAGATAATCATTTTCGAATATACATATGTCTTTACTGAGAAGATAGTAAGTTTTCGCTCCATCACCACGGGGTGTATTCCACTATCCTGATAATTTCTGATCCTGCCATTGTGTCAGTAGTTCGCTCAATCCTTCAAACGAAACCTGTTTCCTTATCAGATGCCTTTTGATCTAATGATTCGTTTGGATCTTCACTATCTCCTTCGTTCGATACCGTCATCCCAAAGATCTCGTCCACTGTCACGCCGAAACAACAGAGACTTATAGGGATCGAAGATGCAGAAAGTGTTTTTTCATCTAACTTTTTTTGCACCCCATATATTCTCCTCCCACTTGGATGGTACATTACATTAATTTGAGTCCGGTAAAACACATTTACACGCTTCCAAGTGTGACATCAGATCGTCAAGAGCTTTACTTTATTCAATGGTGTTTTCCTTTTTTGATCTTATTCTTATGGTGGAGGCATGCATGGCATCGTCTCCTATCTCGGGGCCGGTTGTAACTCCAACGACCACAACAAACGCAGATACTTCAACCATTACTTCCTCTACTACCTCCACGACTACAACCACGACTACCACTACCACACCACCTCATGTAGTCTTGAGTAATTTTTACACTGCGCGCCATAATTATAGAGCCACTTCAATTTTTGTAATTTTTCTGATATCCATGAAAGTTCCAGAATCCTTTCCAATGGTGATAAATATCATTTTTGAATCTGAAAATGTAGAGAACATTCAATTATAGATAGTGAAGCAACGGTTTGAAAAAAATGAAAAAATGTGCCACTTCAAAAATCATCATCACAATTTGTTCACTGTAAAAAGCAGATATTCAAATATTCCACTAGAAATTGATATTTCCAAAGCAATTTCTAAACTAATTTCAGTAGAAAAATTTTCGGTTACAAATGATTTTCGACATTTTTTTTCACAAAAAACGGAAGGTTTGCAAAAAAAACAATTTTTGCC</canonical>
            <polymorphic>AATTACACAAACGCAGAATCTGCGAGATAATCATTTTCGAATATACATATGTCTTTACTGAGAAGATAGTAAGTTTTCGCTCCATCACCACGGGGTGTATTCCACTATCCTGATAATTTCTGATCCTGCCATTGTGTCAGTAGTTCGCTCAATCCTTCAAACGAAACCTGTTTCCTTATCAGATGCCTTTTGATCTAATGATTCGTTTGGATCTTCACTATCTCCTTCGTTCGATACCGTCATCCCAAAGATCTCGTCCACTGTCACGCCGAAACAACAGAGACTTATAGGGATCGAAGATGCAGAAAGTGTTTTTTCATCTAACTTTTTTTGCACCCCATATATTCTCCTCCCACTTGGATGGTACATTACATTAATTTGAGTCCGGTAAAACACATTTACACGCTTCCAAGTGTGACATCAGATCGTCAAGAGCTTTACTTTATTCAATGGTGTTTTCCTTTTTTGATCTTATTCTTATGGTGGAGGCATGCATGGCRTCGTCTCCTATCTCGGGGCCGGTTGTAACTCCAACGACCACAACAAACGCAGATACTTCAACCATTACTTCCTCTACTACCTCCACGACTACAACCACGACTACCACTACCACACCACCTCATGTAGTCTTGAGTAATTTTTACACTGCGCGCCATAATTATAGAGCCACTTCAATTTTTGTAATTTTTCTGATATCCATGAAAGTTCCAGAATCCTTTCCAATGGTGATAAATATCATTTTTGAATCTGAAAATGTAGAGAACATTCAATTATAGATAGTGAAGCAACGGTTTGAAAAAAATGAAAAAATGTGCCACTTCAAAAATCATCATCACAATTTGTTCACTGTAAAAAGCAGATATTCAAATATTCCACTAGAAATTGATATTTCCAAAGCAATTTCTAAACTAATTTCAGTAGAAAAATTTTCGGTTACAAATGATTTTCGACATTTTTTTTCACAAAAAACGGAAGGTTTGCAAAAAAAACAATTTTTGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTACTTTATTCAATGGTGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTACAAAAATTGAAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTTACTTTATTCAATGGTGTTTTCCTTTTTTGATCTTATTCTTATGGTGGAGGCATGCATGGCATCGTCTCCTATCTCGGGGCCGGTTGTAACTCCAACGACCACAACAAACGCAGATACTTCAACCATTACTTCCTCTACTACCTCCACGACTACAACCACGACTACCACTACCACACCACCTCATGTAGTCTTGAGTAATTTTTACACTGCGCGCCATAATTATAGAGCCACTTCAATTTTTGTAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTACTTTATTCAATGGTGTTTTCCTTTTTTGATCTTATTCTTATGGTGGAGGCATGCATGGCRTCGTCTCCTATCTCGGGGCCGGTTGTAACTCCAACGACCACAACAAACGCAGATACTTCAACCATTACTTCCTCTACTACCTCCACGACTACAACCACGACTACCACTACCACACCACCTCATGTAGTCTTGAGTAATTTTTACACTGCGCGCCATAATTATAGAGCCACTTCAATTTTTGTAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23686</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>240293</contig_pos>
        <strand>+</strand>
        <context>AACAAACGCA[A/G]ATACTTCAac</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTCTCCTATCTCGGGGCCGGTTGTAACTCCAACGACCACAACAAACGCA</left_flank>
        <right_flank>ATACTTCAACCATTACTTCCTCTACTACCTCCACGACTACAACCACGACT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTACTGAGAAGATAGTAAGTTTTCGCTCCATCACCACGGGGTGTATTCCACTATCCTGATAATTTCTGATCCTGCCATTGTGTCAGTAGTTCGCTCAATCCTTCAAACGAAACCTGTTTCCTTATCAGATGCCTTTTGATCTAATGATTCGTTTGGATCTTCACTATCTCCTTCGTTCGATACCGTCATCCCAAAGATCTCGTCCACTGTCACGCCGAAACAACAGAGACTTATAGGGATCGAAGATGCAGAAAGTGTTTTTTCATCTAACTTTTTTTGCACCCCATATATTCTCCTCCCACTTGGATGGTACATTACATTAATTTGAGTCCGGTAAAACACATTTACACGCTTCCAAGTGTGACATCAGATCGTCAAGAGCTTTACTTTATTCAATGGTGTTTTCCTTTTTTGATCTTATTCTTATGGTGGAGGCATGCATGGCATCGTCTCCTATCTCGGGGCCGGTTGTAACTCCAACGACCACAACAAACGCAGATACTTCAACCATTACTTCCTCTACTACCTCCACGACTACAACCACGACTACCACTACCACACCACCTCATGTAGTCTTGAGTAATTTTTACACTGCGCGCCATAATTATAGAGCCACTTCAATTTTTGTAATTTTTCTGATATCCATGAAAGTTCCAGAATCCTTTCCAATGGTGATAAATATCATTTTTGAATCTGAAAATGTAGAGAACATTCAATTATAGATAGTGAAGCAACGGTTTGAAAAAAATGAAAAAATGTGCCACTTCAAAAATCATCATCACAATTTGTTCACTGTAAAAAGCAGATATTCAAATATTCCACTAGAAATTGATATTTCCAAAGCAATTTCTAAACTAATTTCAGTAGAAAAATTTTCGGTTACAAATGATTTTCGACATTTTTTTTCACAAAAAACGGAAGGTTTGCAAAAAAAACAATTTTTGCCTATTCCAAATTTTTTCAGGATTGTATAAGTTTTGTCAGATTGTTTATAAGAA</canonical>
            <polymorphic>CTTTACTGAGAAGATAGTAAGTTTTCGCTCCATCACCACGGGGTGTATTCCACTATCCTGATAATTTCTGATCCTGCCATTGTGTCAGTAGTTCGCTCAATCCTTCAAACGAAACCTGTTTCCTTATCAGATGCCTTTTGATCTAATGATTCGTTTGGATCTTCACTATCTCCTTCGTTCGATACCGTCATCCCAAAGATCTCGTCCACTGTCACGCCGAAACAACAGAGACTTATAGGGATCGAAGATGCAGAAAGTGTTTTTTCATCTAACTTTTTTTGCACCCCATATATTCTCCTCCCACTTGGATGGTACATTACATTAATTTGAGTCCGGTAAAACACATTTACACGCTTCCAAGTGTGACATCAGATCGTCAAGAGCTTTACTTTATTCAATGGTGTTTTCCTTTTTTGATCTTATTCTTATGGTGGAGGCATGCATGGCATCGTCTCCTATCTCGGGGCCGGTTGTAACTCCAACGACCACAACAAACGCARATACTTCAACCATTACTTCCTCTACTACCTCCACGACTACAACCACGACTACCACTACCACACCACCTCATGTAGTCTTGAGTAATTTTTACACTGCGCGCCATAATTATAGAGCCACTTCAATTTTTGTAATTTTTCTGATATCCATGAAAGTTCCAGAATCCTTTCCAATGGTGATAAATATCATTTTTGAATCTGAAAATGTAGAGAACATTCAATTATAGATAGTGAAGCAACGGTTTGAAAAAAATGAAAAAATGTGCCACTTCAAAAATCATCATCACAATTTGTTCACTGTAAAAAGCAGATATTCAAATATTCCACTAGAAATTGATATTTCCAAAGCAATTTCTAAACTAATTTCAGTAGAAAAATTTTCGGTTACAAATGATTTTCGACATTTTTTTTCACAAAAAACGGAAGGTTTGCAAAAAAAACAATTTTTGCCTATTCCAAATTTTTTCAGGATTGTATAAGTTTTGTCAGATTGTTTATAAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGATCTTATTCTTATGGTGGA</pcr_primer_p1>
		<pcr_primer_p2>TGGAACTTTCATGGATATCAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTGATCTTATTCTTATGGTGGAGGCATGCATGGCATCGTCTCCTATCTCGGGGCCGGTTGTAACTCCAACGACCACAACAAACGCAGATACTTCAACCATTACTTCCTCTACTACCTCCACGACTACAACCACGACTACCACTACCACACCACCTCATGTAGTCTTGAGTAATTTTTACACTGCGCGCCATAATTATAGAGCCACTTCAATTTTTGTAATTTTTCTGATATCCATGAAAGTTCCA</canonical_amplicon>
		<polymorphic_amplicon>TTTGATCTTATTCTTATGGTGGAGGCATGCATGGCATCGTCTCCTATCTCGGGGCCGGTTGTAACTCCAACGACCACAACAAACGCARATACTTCAACCATTACTTCCTCTACTACCTCCACGACTACAACCACGACTACCACTACCACACCACCTCATGTAGTCTTGAGTAATTTTTACACTGCGCGCCATAATTATAGAGCCACTTCAATTTTTGTAATTTTTCTGATATCCATGAAAGTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23687</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>240406</contig_pos>
        <strand>+</strand>
        <context>ATAATTATAG[A/G]GCCACTTCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCACCTCATGTAGTCTTGAGTAATTTTTACACTGCGCGCCATAATTATAG</left_flank>
        <right_flank>GCCACTTCAATTTTTGTAATTTTTCTGATATCCATGAAAGTTCCAGAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTGTTTCCTTATCAGATGCCTTTTGATCTAATGATTCGTTTGGATCTTCACTATCTCCTTCGTTCGATACCGTCATCCCAAAGATCTCGTCCACTGTCACGCCGAAACAACAGAGACTTATAGGGATCGAAGATGCAGAAAGTGTTTTTTCATCTAACTTTTTTTGCACCCCATATATTCTCCTCCCACTTGGATGGTACATTACATTAATTTGAGTCCGGTAAAACACATTTACACGCTTCCAAGTGTGACATCAGATCGTCAAGAGCTTTACTTTATTCAATGGTGTTTTCCTTTTTTGATCTTATTCTTATGGTGGAGGCATGCATGGCATCGTCTCCTATCTCGGGGCCGGTTGTAACTCCAACGACCACAACAAACGCAGATACTTCAACCATTACTTCCTCTACTACCTCCACGACTACAACCACGACTACCACTACCACACCACCTCATGTAGTCTTGAGTAATTTTTACACTGCGCGCCATAATTATAGAGCCACTTCAATTTTTGTAATTTTTCTGATATCCATGAAAGTTCCAGAATCCTTTCCAATGGTGATAAATATCATTTTTGAATCTGAAAATGTAGAGAACATTCAATTATAGATAGTGAAGCAACGGTTTGAAAAAAATGAAAAAATGTGCCACTTCAAAAATCATCATCACAATTTGTTCACTGTAAAAAGCAGATATTCAAATATTCCACTAGAAATTGATATTTCCAAAGCAATTTCTAAACTAATTTCAGTAGAAAAATTTTCGGTTACAAATGATTTTCGACATTTTTTTTCACAAAAAACGGAAGGTTTGCAAAAAAAACAATTTTTGCCTATTCCAAATTTTTTCAGGATTGTATAAGTTTTGTCAGATTGTTTATAAGAACCTGTTAAACATTATCAAATACATTATTTAGTCTACCAAAGCGCATAAAGAACTGATCAAAAGGTGCAAACGTTTATCATATGAGTTTATTGAAGCTAACTTAAGGTAAGTCG</canonical>
            <polymorphic>ACCTGTTTCCTTATCAGATGCCTTTTGATCTAATGATTCGTTTGGATCTTCACTATCTCCTTCGTTCGATACCGTCATCCCAAAGATCTCGTCCACTGTCACGCCGAAACAACAGAGACTTATAGGGATCGAAGATGCAGAAAGTGTTTTTTCATCTAACTTTTTTTGCACCCCATATATTCTCCTCCCACTTGGATGGTACATTACATTAATTTGAGTCCGGTAAAACACATTTACACGCTTCCAAGTGTGACATCAGATCGTCAAGAGCTTTACTTTATTCAATGGTGTTTTCCTTTTTTGATCTTATTCTTATGGTGGAGGCATGCATGGCATCGTCTCCTATCTCGGGGCCGGTTGTAACTCCAACGACCACAACAAACGCAGATACTTCAACCATTACTTCCTCTACTACCTCCACGACTACAACCACGACTACCACTACCACACCACCTCATGTAGTCTTGAGTAATTTTTACACTGCGCGCCATAATTATAGRGCCACTTCAATTTTTGTAATTTTTCTGATATCCATGAAAGTTCCAGAATCCTTTCCAATGGTGATAAATATCATTTTTGAATCTGAAAATGTAGAGAACATTCAATTATAGATAGTGAAGCAACGGTTTGAAAAAAATGAAAAAATGTGCCACTTCAAAAATCATCATCACAATTTGTTCACTGTAAAAAGCAGATATTCAAATATTCCACTAGAAATTGATATTTCCAAAGCAATTTCTAAACTAATTTCAGTAGAAAAATTTTCGGTTACAAATGATTTTCGACATTTTTTTTCACAAAAAACGGAAGGTTTGCAAAAAAAACAATTTTTGCCTATTCCAAATTTTTTCAGGATTGTATAAGTTTTGTCAGATTGTTTATAAGAACCTGTTAAACATTATCAAATACATTATTTAGTCTACCAAAGCGCATAAAGAACTGATCAAAAGGTGCAAACGTTTATCATATGAGTTTATTGAAGCTAACTTAAGGTAAGTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>481 270 148 83 18</canonical_bands>
                <polymorphic_bands>629 270 83 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGTAACTCCAACGACCAC</pcr_primer_p1>
		<pcr_primer_p2>ATTGAATGTTCTCTACATTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTGTAACTCCAACGACCACAACAAACGCAGATACTTCAACCATTACTTCCTCTACTACCTCCACGACTACAACCACGACTACCACTACCACACCACCTCATGTAGTCTTGAGTAATTTTTACACTGCGCGCCATAATTATAGAGCCACTTCAATTTTTGTAATTTTTCTGATATCCATGAAAGTTCCAGAATCCTTTCCAATGGTGATAAATATCATTTTTGAATCTGAAAATGTAGAGAACATTCAAT</canonical_amplicon>
		<polymorphic_amplicon>GTTGTAACTCCAACGACCACAACAAACGCAGATACTTCAACCATTACTTCCTCTACTACCTCCACGACTACAACCACGACTACCACTACCACACCACCTCATGTAGTCTTGAGTAATTTTTACACTGCGCGCCATAATTATAGRGCCACTTCAATTTTTGTAATTTTTCTGATATCCATGAAAGTTCCAGAATCCTTTCCAATGGTGATAAATATCATTTTTGAATCTGAAAATGTAGAGAACATTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23688</snp_id>
        <super_contig>c000100669.Contig2</super_contig>
        <contig_pos>240452</contig_pos>
        <strand>+</strand>
        <context>GAAAGTTCCA[A/G]AATCCTTTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAGAGCCACTTCAATTTTTGTAATTTTTCTGATATCCATGAAAGTTCCA</left_flank>
        <right_flank>AATCCTTTCCAATGGTGATAAATATCATTTTTGAATCTGAAAATGTAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTCACTATCTCCTTCGTTCGATACCGTCATCCCAAAGATCTCGTCCACTGTCACGCCGAAACAACAGAGACTTATAGGGATCGAAGATGCAGAAAGTGTTTTTTCATCTAACTTTTTTTGCACCCCATATATTCTCCTCCCACTTGGATGGTACATTACATTAATTTGAGTCCGGTAAAACACATTTACACGCTTCCAAGTGTGACATCAGATCGTCAAGAGCTTTACTTTATTCAATGGTGTTTTCCTTTTTTGATCTTATTCTTATGGTGGAGGCATGCATGGCATCGTCTCCTATCTCGGGGCCGGTTGTAACTCCAACGACCACAACAAACGCAGATACTTCAACCATTACTTCCTCTACTACCTCCACGACTACAACCACGACTACCACTACCACACCACCTCATGTAGTCTTGAGTAATTTTTACACTGCGCGCCATAATTATAGAGCCACTTCAATTTTTGTAATTTTTCTGATATCCATGAAAGTTCCAGAATCCTTTCCAATGGTGATAAATATCATTTTTGAATCTGAAAATGTAGAGAACATTCAATTATAGATAGTGAAGCAACGGTTTGAAAAAAATGAAAAAATGTGCCACTTCAAAAATCATCATCACAATTTGTTCACTGTAAAAAGCAGATATTCAAATATTCCACTAGAAATTGATATTTCCAAAGCAATTTCTAAACTAATTTCAGTAGAAAAATTTTCGGTTACAAATGATTTTCGACATTTTTTTTCACAAAAAACGGAAGGTTTGCAAAAAAAACAATTTTTGCCTATTCCAAATTTTTTCAGGATTGTATAAGTTTTGTCAGATTGTTTATAAGAACCTGTTAAACATTATCAAATACATTATTTAGTCTACCAAAGCGCATAAAGAACTGATCAAAAGGTGCAAACGTTTATCATATGAGTTTATTGAAGCTAACTTAAGGTAAGTCGAAAATATAGTAAATATGACGGAATACATTTGAAGCTTCTCAGATTT</canonical>
            <polymorphic>TCTTCACTATCTCCTTCGTTCGATACCGTCATCCCAAAGATCTCGTCCACTGTCACGCCGAAACAACAGAGACTTATAGGGATCGAAGATGCAGAAAGTGTTTTTTCATCTAACTTTTTTTGCACCCCATATATTCTCCTCCCACTTGGATGGTACATTACATTAATTTGAGTCCGGTAAAACACATTTACACGCTTCCAAGTGTGACATCAGATCGTCAAGAGCTTTACTTTATTCAATGGTGTTTTCCTTTTTTGATCTTATTCTTATGGTGGAGGCATGCATGGCATCGTCTCCTATCTCGGGGCCGGTTGTAACTCCAACGACCACAACAAACGCAGATACTTCAACCATTACTTCCTCTACTACCTCCACGACTACAACCACGACTACCACTACCACACCACCTCATGTAGTCTTGAGTAATTTTTACACTGCGCGCCATAATTATAGAGCCACTTCAATTTTTGTAATTTTTCTGATATCCATGAAAGTTCCARAATCCTTTCCAATGGTGATAAATATCATTTTTGAATCTGAAAATGTAGAGAACATTCAATTATAGATAGTGAAGCAACGGTTTGAAAAAAATGAAAAAATGTGCCACTTCAAAAATCATCATCACAATTTGTTCACTGTAAAAAGCAGATATTCAAATATTCCACTAGAAATTGATATTTCCAAAGCAATTTCTAAACTAATTTCAGTAGAAAAATTTTCGGTTACAAATGATTTTCGACATTTTTTTTCACAAAAAACGGAAGGTTTGCAAAAAAAACAATTTTTGCCTATTCCAAATTTTTTCAGGATTGTATAAGTTTTGTCAGATTGTTTATAAGAACCTGTTAAACATTATCAAATACATTATTTAGTCTACCAAAGCGCATAAAGAACTGATCAAAAGGTGCAAACGTTTATCATATGAGTTTATTGAAGCTAACTTAAGGTAAGTCGAAAATATAGTAAATATGACGGAATACATTTGAAGCTTCTCAGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>467 330 170 33</canonical_bands>
                <polymorphic_bands>467 363 170</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>308 219 199 195 79</canonical_bands>
                <polymorphic_bands>387 219 199 195</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 467 33</canonical_bands>
                <polymorphic_bands>533 467</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGTCTTGAGTAATTTTTACACTGC</pcr_primer_p1>
		<pcr_primer_p2>GGAATATTTGAATATCTGCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTAGTCTTGAGTAATTTTTACACTGCGCGCCATAATTATAGAGCCACTTCAATTTTTGTAATTTTTCTGATATCCATGAAAGTTCCAGAATCCTTTCCAATGGTGATAAATATCATTTTTGAATCTGAAAATGTAGAGAACATTCAATTATAGATAGTGAAGCAACGGTTTGAAAAAAATGAAAAAATGTGCCACTTCAAAAATCATCATCACAATTTGTTCACTGTAAAAAGCAGATATTCAAATATTCC</canonical_amplicon>
		<polymorphic_amplicon>GTAGTCTTGAGTAATTTTTACACTGCGCGCCATAATTATAGAGCCACTTCAATTTTTGTAATTTTTCTGATATCCATGAAAGTTCCARAATCCTTTCCAATGGTGATAAATATCATTTTTGAATCTGAAAATGTAGAGAACATTCAATTATAGATAGTGAAGCAACGGTTTGAAAAAAATGAAAAAATGTGCCACTTCAAAAATCATCATCACAATTTGTTCACTGTAAAAAGCAGATATTCAAATATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23689</snp_id>
        <super_contig>c000100830.Contig1</super_contig>
        <contig_pos>43613</contig_pos>
        <strand>+</strand>
        <context>TGTCTAGAAA[A/G]ATTAAGATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATGACATTCATGATCACATTTTAGAAATGTTATGGGTTCTGTCTAGAAA</left_flank>
        <right_flank>ATTAAGATTTCGAAGATGGTCAGAATAGGATGGACTCACTTTTGCTAGAC</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATTTAAAGCATTCAAAGTAATCAATGTCTAAGATCAATATTCTTTTTTAAGCAACATTTCCAATAATCTGTAAAATGGGATCATCAGTTTTTGAATGGGTTTTGACCAGTATTTGACATGCTTCTGGGAGAGTCTCATCGTTTCCAGTTATTGAATGCCAATCGGAAATGTCATCAGCATGCCATTGAACATAAGCTTCAACGATTTCAATGGCCGACTTTGATTCCTCTTCTCCACACATCTGAAATTTTGAATGATTGAGCTACAGTAATCCACCAAACTCCCTCACTTCTTTAACAACAGGAGCCATACAATTCATATAACACGACTGAAACCTGCATAATTTATCCAGTTCAGTCTCATACGTGGCAAGATCAGAAGACACAAAAATCTGATTCTGGTTGTTGGGAGTAGTCTGTTTCAAACGATCAGTTCGAACAATCTCTTCATGACATTCATGATCACATTTTAGAAATGTTATGGGTTCTGTCTAGAAAGATTAAGATTTCGAAGATGGTCAGAATAGGATGGACTCACTTTTGCTAGACATTTCAGAGCTTTCTCAAACAGACTTCTTTTAAATAGGCAGACAAAGTTCGAAGGAGAGAAAGAGTTTTCAGCAGCCTGGAATTGTTTGAATTTGAAGTTGTTGAAGAATAATTAAAAAAATTTGAAGGATTTTTGAAAACCGATTTGAATCCTTTTGTGTCACATATCGATTTCATCAGTTCTATTATTCTGGTACAAAAAACCGGGGTTGTGGAAGCTCCCACAACGACAACTACCGTAACCTAAAAATATGTTTATTTTTCGGATTCATTATTTCGATTTTCGTGCGTTTTCAGTCAATCTTCTCATTATCAAACAAAACAGAAAAATCGACAGGAAGCAGTAAAAAAATGAGATAATAATTACGGAAAACAAAACTATTTTTAGGTTACGGTAGTTGTTGTTGTGGGACCTTTGGCCACCGCTCCCGGTTTTTCTCGTCCACAGCT</canonical>
            <polymorphic>TCATTTAAAGCATTCAAAGTAATCAATGTCTAAGATCAATATTCTTTTTTAAGCAACATTTCCAATAATCTGTAAAATGGGATCATCAGTTTTTGAATGGGTTTTGACCAGTATTTGACATGCTTCTGGGAGAGTCTCATCGTTTCCAGTTATTGAATGCCAATCGGAAATGTCATCAGCATGCCATTGAACATAAGCTTCAACGATTTCAATGGCCGACTTTGATTCCTCTTCTCCACACATCTGAAATTTTGAATGATTGAGCTACAGTAATCCACCAAACTCCCTCACTTCTTTAACAACAGGAGCCATACAATTCATATAACACGACTGAAACCTGCATAATTTATCCAGTTCAGTCTCATACGTGGCAAGATCAGAAGACACAAAAATCTGATTCTGGTTGTTGGGAGTAGTCTGTTTCAAACGATCAGTTCGAACAATCTCTTCATGACATTCATGATCACATTTTAGAAATGTTATGGGTTCTGTCTAGAAARATTAAGATTTCGAAGATGGTCAGAATAGGATGGACTCACTTTTGCTAGACATTTCAGAGCTTTCTCAAACAGACTTCTTTTAAATAGGCAGACAAAGTTCGAAGGAGAGAAAGAGTTTTCAGCAGCCTGGAATTGTTTGAATTTGAAGTTGTTGAAGAATAATTAAAAAAATTTGAAGGATTTTTGAAAACCGATTTGAATCCTTTTGTGTCACATATCGATTTCATCAGTTCTATTATTCTGGTACAAAAAACCGGGGTTGTGGAAGCTCCCACAACGACAACTACCGTAACCTAAAAATATGTTTATTTTTCGGATTCATTATTTCGATTTTCGTGCGTTTTCAGTCAATCTTCTCATTATCAAACAAAACAGAAAAATCGACAGGAAGCAGTAAAAAAATGAGATAATAATTACGGAAAACAAAACTATTTTTAGGTTACGGTAGTTGTTGTTGTGGGACCTTTGGCCACCGCTCCCGGTTTTTCTCGTCCACAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTAGTCTGTTTCAAACGATCAG</pcr_primer_p1>
		<pcr_primer_p2>ATTCTTCAACAACTTCAAATTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGTAGTCTGTTTCAAACGATCAGTTCGAACAATCTCTTCATGACATTCATGATCACATTTTAGAAATGTTATGGGTTCTGTCTAGAAAGATTAAGATTTCGAAGATGGTCAGAATAGGATGGACTCACTTTTGCTAGACATTTCAGAGCTTTCTCAAACAGACTTCTTTTAAATAGGCAGACAAAGTTCGAAGGAGAGAAAGAGTTTTCAGCAGCCTGGAATTGTTTGAATTTGAAGTTGTTGAAGAAT</canonical_amplicon>
		<polymorphic_amplicon>AGTAGTCTGTTTCAAACGATCAGTTCGAACAATCTCTTCATGACATTCATGATCACATTTTAGAAATGTTATGGGTTCTGTCTAGAAARATTAAGATTTCGAAGATGGTCAGAATAGGATGGACTCACTTTTGCTAGACATTTCAGAGCTTTCTCAAACAGACTTCTTTTAAATAGGCAGACAAAGTTCGAAGGAGAGAAAGAGTTTTCAGCAGCCTGGAATTGTTTGAATTTGAAGTTGTTGAAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23690</snp_id>
        <super_contig>c000100830.Contig1</super_contig>
        <contig_pos>66816</contig_pos>
        <strand></strand>
        <context>CCGTATTTTC[A/T]TTATAAACAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTCTATCCCTCTATTGAAAAACAAACTCTCTTATATTTACCGTATTTTC</left_flank>
        <right_flank>TTATAAACAGCCCTATAGGTGCACTTTGAGCTCAATTATCTCGGTCCTGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTTTCCATAGGTTGTGCTGGTGGGAGTTTTTGGAGGGATGAGATTTAGAAAGATAGTGGGACAGATAAAGAAAAAGTGAGAGAGGAGGAGGAAAAAACCCCAAGAAAAGGGATACCCACAAATTGTTATTGATTTTAAATGAGATTGGTGATTGTCGGAATGACTGTTTGACCACCTGCGTCGAGTGGGCGATGCAGAACTTTTAGGAAAAAAAAAATTTCCAGTGGAGATAAAGTTACACGAGGATCTCTTTTCGTTACAGGAAAACTGAGTGGACATTGGTGAGGTTTCAGGTTATCCCAAAGTTTGCAAAATTGTCAAAACATTGAAATGGTGGGAATTCGGAAGCTCATAATTTCAAGGATCACACAATTCAGAATATCTTTCTTTTTGTTTTTCAATAACCTAGAAATCCCAAAATCATATTTTTCATCCAAAAATTTTTGTAGTCTATCCCTCTATTGAAAAACAAACTCTCTTATATTTACCGTATTTTCATTATAAACAGCCCTATAGGTGCACTTTGAGCTCAATTATCTCGGTCCTGTCAAGGATATCAAAAACTTTTATTTGATAAATTACTTATCATTATGTCAGCAATATTTTATCAGTTGACATGTTTTAGATATCACTTATAGGAACTGAGTTAATTGAGCTCAAAGTGCACGTAGAAAATACGGTAAATAGGTGTTATTCCAAACGGAATCTCAAATTAAGAATTTTCATTAGTGGAGACTATCATTTCTGAGTGGCCTAGAAAAAGTGAATCGGAAGTCATTAAGAAATAGAAATATATTCGATAAGCTCTCAGTTCAATTAGACAAGAAATGAAACAAGATTCGTATCAGAGTCAGGAGTTCCTCCTACTTCAACTTTATCTTCGAATCCGATCCGACTAATAAAAAGATGATATAAAATGGGATCTAGTTTTCATGAACTTCAGACAGGTGTCGATGGCACGAAAGATTTGATCTCAATCTTTGTTCTTGTTGTGAGTT</canonical>
            <polymorphic>GTCTTTCCATAGGTTGTGCTGGTGGGAGTTTTTGGAGGGATGAGATTTAGAAAGATAGTGGGACAGATAAAGAAAAAGTGAGAGAGGAGGAGGAAAAAACCCCAAGAAAAGGGATACCCACAAATTGTTATTGATTTTAAATGAGATTGGTGATTGTCGGAATGACTGTTTGACCACCTGCGTCGAGTGGGCGATGCAGAACTTTTAGGAAAAAAAAAATTTCCAGTGGAGATAAAGTTACACGAGGATCTCTTTTCGTTACAGGAAAACTGAGTGGACATTGGTGAGGTTTCAGGTTATCCCAAAGTTTGCAAAATTGTCAAAACATTGAAATGGTGGGAATTCGGAAGCTCATAATTTCAAGGATCACACAATTCAGAATATCTTTCTTTTTGTTTTTCAATAACCTAGAAATCCCAAAATCATATTTTTCATCCAAAAATTTTTGTAGTCTATCCCTCTATTGAAAAACAAACTCTCTTATATTTACCGTATTTTCWTTATAAACAGCCCTATAGGTGCACTTTGAGCTCAATTATCTCGGTCCTGTCAAGGATATCAAAAACTTTTATTTGATAAATTACTTATCATTATGTCAGCAATATTTTATCAGTTGACATGTTTTAGATATCACTTATAGGAACTGAGTTAATTGAGCTCAAAGTGCACGTAGAAAATACGGTAAATAGGTGTTATTCCAAACGGAATCTCAAATTAAGAATTTTCATTAGTGGAGACTATCATTTCTGAGTGGCCTAGAAAAAGTGAATCGGAAGTCATTAAGAAATAGAAATATATTCGATAAGCTCTCAGTTCAATTAGACAAGAAATGAAACAAGATTCGTATCAGAGTCAGGAGTTCCTCCTACTTCAACTTTATCTTCGAATCCGATCCGACTAATAAAAAGATGATATAAAATGGGATCTAGTTTTCATGAACTTCAGACAGGTGTCGATGGCACGAAAGATTTGATCTCAATCTTTGTTCTTGTTGTGAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTAGTCTATCCCTCTATTGAAA</pcr_primer_p1>
		<pcr_primer_p2>AACACCTATTTACCGTATTTTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGTAGTCTATCCCTCTATTGAAAAACAAACTCTCTTATATTTACCGTATTTTCATTATAAACAGCCCTATAGGTGCACTTTGAGCTCAATTATCTCGGTCCTGTCAAGGATATCAAAAACTTTTATTTGATAAATTACTTATCATTATGTCAGCAATATTTTATCAGTTGACATGTTTTAGATATCACTTATAGGAACTGAGTTAATTGAGCTCAAAGTGCACGTAGAAAATACGGTAAATAGGTGTT</canonical_amplicon>
		<polymorphic_amplicon>TTTGTAGTCTATCCCTCTATTGAAAAACAAACTCTCTTATATTTACCGTATTTTCWTTATAAACAGCCCTATAGGTGCACTTTGAGCTCAATTATCTCGGTCCTGTCAAGGATATCAAAAACTTTTATTTGATAAATTACTTATCATTATGTCAGCAATATTTTATCAGTTGACATGTTTTAGATATCACTTATAGGAACTGAGTTAATTGAGCTCAAAGTGCACGTAGAAAATACGGTAAATAGGTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23691</snp_id>
        <super_contig>c000100830.Contig1</super_contig>
        <contig_pos>66840</contig_pos>
        <strand></strand>
        <context>TATAGGTGCa[C/A]tttgagctca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AACTCTCTTATATTTACCGTATTTTCATTATAAACAGCCCTATAGGTGCA</left_flank>
        <right_flank>TTTGAGCTCAATTATCTCGGTCCTGTCAAGGATATCAAAAACTTTTATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGTTTTTGGAGGGATGAGATTTAGAAAGATAGTGGGACAGATAAAGAAAAAGTGAGAGAGGAGGAGGAAAAAACCCCAAGAAAAGGGATACCCACAAATTGTTATTGATTTTAAATGAGATTGGTGATTGTCGGAATGACTGTTTGACCACCTGCGTCGAGTGGGCGATGCAGAACTTTTAGGAAAAAAAAAATTTCCAGTGGAGATAAAGTTACACGAGGATCTCTTTTCGTTACAGGAAAACTGAGTGGACATTGGTGAGGTTTCAGGTTATCCCAAAGTTTGCAAAATTGTCAAAACATTGAAATGGTGGGAATTCGGAAGCTCATAATTTCAAGGATCACACAATTCAGAATATCTTTCTTTTTGTTTTTCAATAACCTAGAAATCCCAAAATCATATTTTTCATCCAAAAATTTTTGTAGTCTATCCCTCTATTGAAAAACAAACTCTCTTATATTTACCGTATTTTCATTATAAACAGCCCTATAGGTGCACTTTGAGCTCAATTATCTCGGTCCTGTCAAGGATATCAAAAACTTTTATTTGATAAATTACTTATCATTATGTCAGCAATATTTTATCAGTTGACATGTTTTAGATATCACTTATAGGAACTGAGTTAATTGAGCTCAAAGTGCACGTAGAAAATACGGTAAATAGGTGTTATTCCAAACGGAATCTCAAATTAAGAATTTTCATTAGTGGAGACTATCATTTCTGAGTGGCCTAGAAAAAGTGAATCGGAAGTCATTAAGAAATAGAAATATATTCGATAAGCTCTCAGTTCAATTAGACAAGAAATGAAACAAGATTCGTATCAGAGTCAGGAGTTCCTCCTACTTCAACTTTATCTTCGAATCCGATCCGACTAATAAAAAGATGATATAAAATGGGATCTAGTTTTCATGAACTTCAGACAGGTGTCGATGGCACGAAAGATTTGATCTCAATCTTTGTTCTTGTTGTGAGTTGTAGGAGCAATCATCTGGACTTTG</canonical>
            <polymorphic>GGAGTTTTTGGAGGGATGAGATTTAGAAAGATAGTGGGACAGATAAAGAAAAAGTGAGAGAGGAGGAGGAAAAAACCCCAAGAAAAGGGATACCCACAAATTGTTATTGATTTTAAATGAGATTGGTGATTGTCGGAATGACTGTTTGACCACCTGCGTCGAGTGGGCGATGCAGAACTTTTAGGAAAAAAAAAATTTCCAGTGGAGATAAAGTTACACGAGGATCTCTTTTCGTTACAGGAAAACTGAGTGGACATTGGTGAGGTTTCAGGTTATCCCAAAGTTTGCAAAATTGTCAAAACATTGAAATGGTGGGAATTCGGAAGCTCATAATTTCAAGGATCACACAATTCAGAATATCTTTCTTTTTGTTTTTCAATAACCTAGAAATCCCAAAATCATATTTTTCATCCAAAAATTTTTGTAGTCTATCCCTCTATTGAAAAACAAACTCTCTTATATTTACCGTATTTTCATTATAAACAGCCCTATAGGTGCAMTTTGAGCTCAATTATCTCGGTCCTGTCAAGGATATCAAAAACTTTTATTTGATAAATTACTTATCATTATGTCAGCAATATTTTATCAGTTGACATGTTTTAGATATCACTTATAGGAACTGAGTTAATTGAGCTCAAAGTGCACGTAGAAAATACGGTAAATAGGTGTTATTCCAAACGGAATCTCAAATTAAGAATTTTCATTAGTGGAGACTATCATTTCTGAGTGGCCTAGAAAAAGTGAATCGGAAGTCATTAAGAAATAGAAATATATTCGATAAGCTCTCAGTTCAATTAGACAAGAAATGAAACAAGATTCGTATCAGAGTCAGGAGTTCCTCCTACTTCAACTTTATCTTCGAATCCGATCCGACTAATAAAAAGATGATATAAAATGGGATCTAGTTTTCATGAACTTCAGACAGGTGTCGATGGCACGAAAGATTTGATCTCAATCTTTGTTCTTGTTGTGAGTTGTAGGAGCAATCATCTGGACTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>499 356 127 9 9</canonical_bands>
                <polymorphic_bands>508 356 127 9</polymorphic_bands>
            </assay>
            <assay>
                <site>GTGCAC</site>
                <isoschizomers>
                    <enzyme>Alw44I</enzyme>
                    <enzyme>ApaLI</enzyme>
                    <enzyme>VneI</enzyme>
                </isoschizomers>
                <canonical_bands>495 360 145</canonical_bands>
                <polymorphic_bands>640 360</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>499 356 145</canonical_bands>
                <polymorphic_bands>644 356</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>499 356 127 9 9</canonical_bands>
                <polymorphic_bands>508 356 127 9</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>185 150 110 52 41 40 39 36 35 34 33 32 31 28 24 24 20 20 14 14 13 10 9 2 2 2</canonical_bands>
                <polymorphic_bands>185 150 112 52 41 40 39 36 35 34 33 32 31 28 24 24 20 20 14 14 13 10 9 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>358 252 245 94 51</canonical_bands>
                <polymorphic_bands>358 339 252 51</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCCTCTATTGAAAAACAAACT</pcr_primer_p1>
		<pcr_primer_p2>CGTTTGGAATAACACCTATTTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCCCTCTATTGAAAAACAAACTCTCTTATATTTACCGTATTTTCATTATAAACAGCCCTATAGGTGCACTTTGAGCTCAATTATCTCGGTCCTGTCAAGGATATCAAAAACTTTTATTTGATAAATTACTTATCATTATGTCAGCAATATTTTATCAGTTGACATGTTTTAGATATCACTTATAGGAACTGAGTTAATTGAGCTCAAAGTGCACGTAGAAAATACGGTAAATAGGTGTTATTCCAAACG</canonical_amplicon>
		<polymorphic_amplicon>ATCCCTCTATTGAAAAACAAACTCTCTTATATTTACCGTATTTTCATTATAAACAGCCCTATAGGTGCAMTTTGAGCTCAATTATCTCGGTCCTGTCAAGGATATCAAAAACTTTTATTTGATAAATTACTTATCATTATGTCAGCAATATTTTATCAGTTGACATGTTTTAGATATCACTTATAGGAACTGAGTTAATTGAGCTCAAAGTGCACGTAGAAAATACGGTAAATAGGTGTTATTCCAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23692</snp_id>
        <super_contig>c000100830.Contig1</super_contig>
        <contig_pos>67033</contig_pos>
        <strand></strand>
        <context>ATCTCAAATT[A/G]AGAATTTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACGTAGAAAATACGGTAAATAGGTGTTATTCCAAACGGAATCTCAAATT</left_flank>
        <right_flank>AGAATTTTCATTAGTGGAGACTATCATTTCTGAGTGGCCTAGAAAAAGTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTCCAGTGGAGATAAAGTTACACGAGGATCTCTTTTCGTTACAGGAAAACTGAGTGGACATTGGTGAGGTTTCAGGTTATCCCAAAGTTTGCAAAATTGTCAAAACATTGAAATGGTGGGAATTCGGAAGCTCATAATTTCAAGGATCACACAATTCAGAATATCTTTCTTTTTGTTTTTCAATAACCTAGAAATCCCAAAATCATATTTTTCATCCAAAAATTTTTGTAGTCTATCCCTCTATTGAAAAACAAACTCTCTTATATTTACCGTATTTTCATTATAAACAGCCCTATAGGTGCACTTTGAGCTCAATTATCTCGGTCCTGTCAAGGATATCAAAAACTTTTATTTGATAAATTACTTATCATTATGTCAGCAATATTTTATCAGTTGACATGTTTTAGATATCACTTATAGGAACTGAGTTAATTGAGCTCAAAGTGCACGTAGAAAATACGGTAAATAGGTGTTATTCCAAACGGAATCTCAAATTAAGAATTTTCATTAGTGGAGACTATCATTTCTGAGTGGCCTAGAAAAAGTGAATCGGAAGTCATTAAGAAATAGAAATATATTCGATAAGCTCTCAGTTCAATTAGACAAGAAATGAAACAAGATTCGTATCAGAGTCAGGAGTTCCTCCTACTTCAACTTTATCTTCGAATCCGATCCGACTAATAAAAAGATGATATAAAATGGGATCTAGTTTTCATGAACTTCAGACAGGTGTCGATGGCACGAAAGATTTGATCTCAATCTTTGTTCTTGTTGTGAGTTGTAGGAGCAATCATCTGGACTTTGTCACGTAATCGATAATTTTGAATGGTCAATGTGACCTAGATTCAAGTGAGAAATTCGAGTATTTTGTAGAATATAACAGATCTTGATGAAAACGTTCGAACATGGTCCAACCAAGAGTTCATAACCCAATTCATCTTTTCATCTTTTTCCGTTTTTCTATATTCCTCGTGACGGCCGCGTCGTCATCCAGAAC</canonical>
            <polymorphic>AATTTCCAGTGGAGATAAAGTTACACGAGGATCTCTTTTCGTTACAGGAAAACTGAGTGGACATTGGTGAGGTTTCAGGTTATCCCAAAGTTTGCAAAATTGTCAAAACATTGAAATGGTGGGAATTCGGAAGCTCATAATTTCAAGGATCACACAATTCAGAATATCTTTCTTTTTGTTTTTCAATAACCTAGAAATCCCAAAATCATATTTTTCATCCAAAAATTTTTGTAGTCTATCCCTCTATTGAAAAACAAACTCTCTTATATTTACCGTATTTTCATTATAAACAGCCCTATAGGTGCACTTTGAGCTCAATTATCTCGGTCCTGTCAAGGATATCAAAAACTTTTATTTGATAAATTACTTATCATTATGTCAGCAATATTTTATCAGTTGACATGTTTTAGATATCACTTATAGGAACTGAGTTAATTGAGCTCAAAGTGCACGTAGAAAATACGGTAAATAGGTGTTATTCCAAACGGAATCTCAAATTRAGAATTTTCATTAGTGGAGACTATCATTTCTGAGTGGCCTAGAAAAAGTGAATCGGAAGTCATTAAGAAATAGAAATATATTCGATAAGCTCTCAGTTCAATTAGACAAGAAATGAAACAAGATTCGTATCAGAGTCAGGAGTTCCTCCTACTTCAACTTTATCTTCGAATCCGATCCGACTAATAAAAAGATGATATAAAATGGGATCTAGTTTTCATGAACTTCAGACAGGTGTCGATGGCACGAAAGATTTGATCTCAATCTTTGTTCTTGTTGTGAGTTGTAGGAGCAATCATCTGGACTTTGTCACGTAATCGATAATTTTGAATGGTCAATGTGACCTAGATTCAAGTGAGAAATTCGAGTATTTTGTAGAATATAACAGATCTTGATGAAAACGTTCGAACATGGTCCAACCAAGAGTTCATAACCCAATTCATCTTTTCATCTTTTTCCGTTTTTCTATATTCCTCGTGACGGCCGCGTCGTCATCCAGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>437 432 66 65</canonical_bands>
                <polymorphic_bands>437 432 131</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCACGTAGAAAATACGGTAAAT</pcr_primer_p1>
		<pcr_primer_p2>GGATTCGAAGATAAAGTTGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>225</pcr_amplicon_size>
		<canonical_amplicon>GCACGTAGAAAATACGGTAAATAGGTGTTATTCCAAACGGAATCTCAAATTAAGAATTTTCATTAGTGGAGACTATCATTTCTGAGTGGCCTAGAAAAAGTGAATCGGAAGTCATTAAGAAATAGAAATATATTCGATAAGCTCTCAGTTCAATTAGACAAGAAATGAAACAAGATTCGTATCAGAGTCAGGAGTTCCTCCTACTTCAACTTTATCTTCGAATCC</canonical_amplicon>
		<polymorphic_amplicon>GCACGTAGAAAATACGGTAAATAGGTGTTATTCCAAACGGAATCTCAAATTRAGAATTTTCATTAGTGGAGACTATCATTTCTGAGTGGCCTAGAAAAAGTGAATCGGAAGTCATTAAGAAATAGAAATATATTCGATAAGCTCTCAGTTCAATTAGACAAGAAATGAAACAAGATTCGTATCAGAGTCAGGAGTTCCTCCTACTTCAACTTTATCTTCGAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23693</snp_id>
        <super_contig>c000100830.Contig1</super_contig>
        <contig_pos>83163</contig_pos>
        <strand>+</strand>
        <context>TCCGGTTGTA[A/T]ATGAAATATA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCTTCTCTCCCTAACGAGGTTCAAATTTATTTTCTTCCGTCCGGTTGTA</left_flank>
        <right_flank>ATGAAATATAATCCGCCCAATCGCAATTAGTGTGACATTTGGCACACCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAACAGTTTGATTGGAGCTTTTTCGTAATGTCCAATTCAAGTTGGAGTCTGTTCAAGTTTTGAGCTAAATTTTTACTGTATGTGCATTTTGTCGTAAATCATGAGACATTGTGTGCATGCACCAGAGGCGCCTTTTCAACATTATCAAGCCGCGAAAAAATATTTTTCGCTATTTTTTGGAGATTTTCAAAGATTTTCAGAACTTTTTTCTTTTTTTCCTCAAATTTTCAATTTTCTAGTCATTTTCCTACAAAAATTCAAAAATCCTTCCGATATGAATCCAAAATTTTGTGTTAAAGTGAGAAATATGGTTTTTCTTGCCGTTTCCTCTCCGTATAATAAGGTTTCCACTAACTTTCCCTTTCTCATTATTTTAATATAAATTTCTAGGTTTTTTTTTCAAACTTTAAAAAATTCTAATTAAATATTAGTTTTAAAAAGCTGACCTTCCTTCTCTCCCTAACGAGGTTCAAATTTATTTTCTTCCGTCCGGTTGTATATGAAATATAATCCGCCCAATCGCAATTAGTGTGACATTTGGCACACCATTCGGCGCCGGCATTATCACAGAAATTCGACAGCAGTGTGCCGTGCACACGTCCTCTTCTTCAAAGTCGCCTGGCTTCGGTCCGTTCGTGGTGGTCACTCTCTGGGTACTCCTCATATTGCACATACACTGTTCACTGGTTCCCCCCGTCACTCCAACAACACAACAGCACATTTCAATTGCATTGGTCATCGAAGGCTTGGGAAGAAGGGGAAGGCCCTGGGCGAGCGCACTCTCTGGTGTCTCCTCACGGCCATCGCTCTTCCCAATTACCCTCTTTAAATCTTCACTGATCTTCCTTCTCGTAGAAAAGCACATAGCAAGTCTGTCTCTAGTACTTGAGCGATTATTTTATTCCATTTTTTTTGTTACCACTAGATTTCGTAACTCTCATAACTGGAACTACTTCTGTTTCGAAATTTTCCAGTTTTTATTCAAGCTCAATATCATAA</canonical>
            <polymorphic>CGAACAGTTTGATTGGAGCTTTTTCGTAATGTCCAATTCAAGTTGGAGTCTGTTCAAGTTTTGAGCTAAATTTTTACTGTATGTGCATTTTGTCGTAAATCATGAGACATTGTGTGCATGCACCAGAGGCGCCTTTTCAACATTATCAAGCCGCGAAAAAATATTTTTCGCTATTTTTTGGAGATTTTCAAAGATTTTCAGAACTTTTTTCTTTTTTTCCTCAAATTTTCAATTTTCTAGTCATTTTCCTACAAAAATTCAAAAATCCTTCCGATATGAATCCAAAATTTTGTGTTAAAGTGAGAAATATGGTTTTTCTTGCCGTTTCCTCTCCGTATAATAAGGTTTCCACTAACTTTCCCTTTCTCATTATTTTAATATAAATTTCTAGGTTTTTTTTTCAAACTTTAAAAAATTCTAATTAAATATTAGTTTTAAAAAGCTGACCTTCCTTCTCTCCCTAACGAGGTTCAAATTTATTTTCTTCCGTCCGGTTGTAWATGAAATATAATCCGCCCAATCGCAATTAGTGTGACATTTGGCACACCATTCGGCGCCGGCATTATCACAGAAATTCGACAGCAGTGTGCCGTGCACACGTCCTCTTCTTCAAAGTCGCCTGGCTTCGGTCCGTTCGTGGTGGTCACTCTCTGGGTACTCCTCATATTGCACATACACTGTTCACTGGTTCCCCCCGTCACTCCAACAACACAACAGCACATTTCAATTGCATTGGTCATCGAAGGCTTGGGAAGAAGGGGAAGGCCCTGGGCGAGCGCACTCTCTGGTGTCTCCTCACGGCCATCGCTCTTCCCAATTACCCTCTTTAAATCTTCACTGATCTTCCTTCTCGTAGAAAAGCACATAGCAAGTCTGTCTCTAGTACTTGAGCGATTATTTTATTCCATTTTTTTTGTTACCACTAGATTTCGTAACTCTCATAACTGGAACTACTTCTGTTTCGAAATTTTCCAGTTTTTATTCAAGCTCAATATCATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGTATAATAAGGTTTCCACTAA</pcr_primer_p1>
		<pcr_primer_p2>CTGTCGAATTTCTGTGATAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCGTATAATAAGGTTTCCACTAACTTTCCCTTTCTCATTATTTTAATATAAATTTCTAGGTTTTTTTTTCAAACTTTAAAAAATTCTAATTAAATATTAGTTTTAAAAAGCTGACCTTCCTTCTCTCCCTAACGAGGTTCAAATTTATTTTCTTCCGTCCGGTTGTATATGAAATATAATCCGCCCAATCGCAATTAGTGTGACATTTGGCACACCATTCGGCGCCGGCATTATCACAGAAATTCGACAG</canonical_amplicon>
		<polymorphic_amplicon>CCGTATAATAAGGTTTCCACTAACTTTCCCTTTCTCATTATTTTAATATAAATTTCTAGGTTTTTTTTTCAAACTTTAAAAAATTCTAATTAAATATTAGTTTTAAAAAGCTGACCTTCCTTCTCTCCCTAACGAGGTTCAAATTTATTTTCTTCCGTCCGGTTGTAWATGAAATATAATCCGCCCAATCGCAATTAGTGTGACATTTGGCACACCATTCGGCGCCGGCATTATCACAGAAATTCGACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23694</snp_id>
        <super_contig>c000100830.Contig1</super_contig>
        <contig_pos>98710</contig_pos>
        <strand></strand>
        <context>gggatcactg[A/T]aggggaaaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAAGGATTACTGTAGGGGAAAAATATTCGAAAATTAAAGGGATCACTG</left_flank>
        <right_flank>AGGGGAAAATATTCGAAAATCAAAAGGATTACGTTTTTCTGATTCCTACG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATAGAAAAGAGGATTATGTGACGTGAGGGATATTGGTCAAAACATAAAAAAGAGTGAGAGAGATGGAAAACGGGGGAGAGCAATAAATATTTGATTGGTGGAGGCTTGAATAGAGAATGAGATTAGGCTTGAGAATGGGAAAAAAAAGGGAAATTTTCAGTTGATGGGCGAGAATTGTTGCATCGTTTCGTGGGACAACGGACAACAGATTCATCTTCCGAGATCTGCACTCATCAAGGTTCCAGGAATGCAGCATCAGTGATAATTGGGAGACAATTGGAATTTCAAGTTATGATACTCACACTTCTATTTGGGAAATAAAGTATAATTTCTGTGCCTTTTTGGTGAAAGATCAGATTGAAATGAGCAATGGAATCAGAAATTACCGTAGGAAGTAACATTCGGAAATTCAGAAGGATTACTGTAGGGGGAAAATATTCAAAAGTGAAAAAGGATTACTGTAGGGGAAAAATATTCGAAAATTAAAGGGATCACTGAAGGGGAAAATATTCGAAAATCAAAAGGATTACGTTTTTCTGATTCCTACGAATCTGGAAATCTTAAAATCTGTAGACCTGCAATAGTTCTTTATGGAAATAATTATCAGAGACGTTTGAGAATTAAGATCATCTGAAGGTGGCCATTTGAATCAAAAAGGGAAGAGGTGCTAACGTAAAAGGGATACAGAGCATGAAAGATACGGTACTGACTTTCTTGTAATTTCCAATGACACCTAATCTGAATTTCAGGCTCCGACTCGAACAGGAGTTCAGATTTGTTTGAGGTGATTTTTTGCTAATTGTAAGATTAGTCTCCGAAAAGATCTGAAATTTTGAAGAGATCTAGATCTTCTAAACAGCATATTTATCACTATAGTTGGTTGATTTTCATGAGTACATTTTCACTGCTAGGAACCCTATGTTTCTCCTCGCTTTTTGTTTTCTTGTGTTCTGTAGAATTTCAAAAAGCTCTTATGTACCCTCATTTAGTACAGCGTT</canonical>
            <polymorphic>TCATAGAAAAGAGGATTATGTGACGTGAGGGATATTGGTCAAAACATAAAAAAGAGTGAGAGAGATGGAAAACGGGGGAGAGCAATAAATATTTGATTGGTGGAGGCTTGAATAGAGAATGAGATTAGGCTTGAGAATGGGAAAAAAAAGGGAAATTTTCAGTTGATGGGCGAGAATTGTTGCATCGTTTCGTGGGACAACGGACAACAGATTCATCTTCCGAGATCTGCACTCATCAAGGTTCCAGGAATGCAGCATCAGTGATAATTGGGAGACAATTGGAATTTCAAGTTATGATACTCACACTTCTATTTGGGAAATAAAGTATAATTTCTGTGCCTTTTTGGTGAAAGATCAGATTGAAATGAGCAATGGAATCAGAAATTACCGTAGGAAGTAACATTCGGAAATTCAGAAGGATTACTGTAGGGGGAAAATATTCAAAAGTGAAAAAGGATTACTGTAGGGGAAAAATATTCGAAAATTAAAGGGATCACTGWAGGGGAAAATATTCGAAAATCAAAAGGATTACGTTTTTCTGATTCCTACGAATCTGGAAATCTTAAAATCTGTAGACCTGCAATAGTTCTTTATGGAAATAATTATCAGAGACGTTTGAGAATTAAGATCATCTGAAGGTGGCCATTTGAATCAAAAAGGGAAGAGGTGCTAACGTAAAAGGGATACAGAGCATGAAAGATACGGTACTGACTTTCTTGTAATTTCCAATGACACCTAATCTGAATTTCAGGCTCCGACTCGAACAGGAGTTCAGATTTGTTTGAGGTGATTTTTTGCTAATTGTAAGATTAGTCTCCGAAAAGATCTGAAATTTTGAAGAGATCTAGATCTTCTAAACAGCATATTTATCACTATAGTTGGTTGATTTTCATGAGTACATTTTCACTGCTAGGAACCCTATGTTTCTCCTCGCTTTTTGTTTTCTTGTGTTCTGTAGAATTTCAAAAAGCTCTTATGTACCCTCATTTAGTACAGCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGAAAGATCAGATTGAAATGAG</pcr_primer_p1>
		<pcr_primer_p2>CCATAAAGAACTATTGCAGGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGAAAGATCAGATTGAAATGAGCAATGGAATCAGAAATTACCGTAGGAAGTAACATTCGGAAATTCAGAAGGATTACTGTAGGGGGAAAATATTCAAAAGTGAAAAAGGATTACTGTAGGGGAAAAATATTCGAAAATTAAAGGGATCACTGAAGGGGAAAATATTCGAAAATCAAAAGGATTACGTTTTTCTGATTCCTACGAATCTGGAAATCTTAAAATCTGTAGACCTGCAATAGTTCTTTATGG</canonical_amplicon>
		<polymorphic_amplicon>GTGAAAGATCAGATTGAAATGAGCAATGGAATCAGAAATTACCGTAGGAAGTAACATTCGGAAATTCAGAAGGATTACTGTAGGGGGAAAATATTCAAAAGTGAAAAAGGATTACTGTAGGGGAAAAATATTCGAAAATTAAAGGGATCACTGWAGGGGAAAATATTCGAAAATCAAAAGGATTACGTTTTTCTGATTCCTACGAATCTGGAAATCTTAAAATCTGTAGACCTGCAATAGTTCTTTATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23695</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>23902</contig_pos>
        <strand>+</strand>
        <context>TTTTTACAAA[A/T]TTTGATACCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAGAAAAAGAAGAGGATTTTGTGAGGAGAATGGTATTTTTTTTTACAAA</left_flank>
        <right_flank>TTTGATACCCACAATGCCCATGTTTTAAAGTTTTGAAAATTTGACGTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAAGAAGGGCGGTGGCGTCGAGAATTGTGCTTTCAGATGATGAATTTCATCGTAAGTCTTCGAATTTTGATTTTCAGAAAGTTTGGTGACGTTAGATCTATTTTTCGGCTTATTCCCGTCATTTTGAGCCCCATATTGCCATGTTTTCAAAAATTTTGGAATTCAGAAATCTCCAGAATTCAAGATTCAAATGAAATAAACTTTGAAAAAATAATTTCTACAAAATTCCCGATTGGCATGATTCTGAAAGTTTGAAATTTCGACGTCTTCTGATGCAAGATCTGGAGAAGAGAATTTTCAGAATCTCGATGACTTAAAAAACGGGAAATTGTGTTTTTCGTGTTGTCCATTCAATTTCCAACAATTTGATACCCATATTGCCATGCTTTCAAATTTTTTGAAAATTCGACGTCTTCTGAATTCAGAAGACGTCTGAACTCAATACAGTGAGAAAAAGAAGAGGATTTTGTGAGGAGAATGGTATTTTTTTTTACAAATTTTGATACCCACAATGCCCATGTTTTAAAGTTTTGAAAATTTGACGTCTTCTGGTATGAAATCTGGAGAAGAGATTCTCTGGATTCTGGAGCATTTTTAAACTTCGATATAGCAAAACTCGAGTTCTCCAGTAAAATCCTGACATTTTGATACCTATATTGCCATGACTCTGAAATTTTGAAATGTTGACGTCTTCCGATGTGAAATCTGGAGAAGAGAAGAGAATTTTCAGAATCTCGTAATTTTAGAAAACCAGAAATTGTGTTATTTGAGTTTTCCACATTATCCCCAACATTTTGATACCCATATTGCCCATGTTTAGTCATCTTCAGATTTTGAGTTCTTCTTCTTCTCCGAATCTCAAAATCCAAAGTTATCAAAACATGGGCAATATGGGTATCAAAATGTCCCAAATTTCATGATTTTTCTTCTTTTAACCATCTTTATCTTTTTCTTCCTTTCTTAAAAATTTGAGAAACAATTTTTCTAGACATCAATCC</canonical>
            <polymorphic>TAAAAGAAGGGCGGTGGCGTCGAGAATTGTGCTTTCAGATGATGAATTTCATCGTAAGTCTTCGAATTTTGATTTTCAGAAAGTTTGGTGACGTTAGATCTATTTTTCGGCTTATTCCCGTCATTTTGAGCCCCATATTGCCATGTTTTCAAAAATTTTGGAATTCAGAAATCTCCAGAATTCAAGATTCAAATGAAATAAACTTTGAAAAAATAATTTCTACAAAATTCCCGATTGGCATGATTCTGAAAGTTTGAAATTTCGACGTCTTCTGATGCAAGATCTGGAGAAGAGAATTTTCAGAATCTCGATGACTTAAAAAACGGGAAATTGTGTTTTTCGTGTTGTCCATTCAATTTCCAACAATTTGATACCCATATTGCCATGCTTTCAAATTTTTTGAAAATTCGACGTCTTCTGAATTCAGAAGACGTCTGAACTCAATACAGTGAGAAAAAGAAGAGGATTTTGTGAGGAGAATGGTATTTTTTTTTACAAAWTTTGATACCCACAATGCCCATGTTTTAAAGTTTTGAAAATTTGACGTCTTCTGGTATGAAATCTGGAGAAGAGATTCTCTGGATTCTGGAGCATTTTTAAACTTCGATATAGCAAAACTCGAGTTCTCCAGTAAAATCCTGACATTTTGATACCTATATTGCCATGACTCTGAAATTTTGAAATGTTGACGTCTTCCGATGTGAAATCTGGAGAAGAGAAGAGAATTTTCAGAATCTCGTAATTTTAGAAAACCAGAAATTGTGTTATTTGAGTTTTCCACATTATCCCCAACATTTTGATACCCATATTGCCCATGTTTAGTCATCTTCAGATTTTGAGTTCTTCTTCTTCTCCGAATCTCAAAATCCAAAGTTATCAAAACATGGGCAATATGGGTATCAAAATGTCCCAAATTTCATGATTTTTCTTCTTTTAACCATCTTTATCTTTTTCTTCCTTTCTTAAAAATTTGAGAAACAATTTTTCTAGACATCAATCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>189 136 99 89 77 55 50 47 44 40 37 33 32 20 17 16 11 8</canonical_bands>
                <polymorphic_bands>189 136 117 99 89 55 50 47 44 37 33 32 20 17 16 11 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>155 136 89 77 55 50 40 37 36 34 32 29 26 24 21 20 20 17 17 17 16 12 11 11 10 8</canonical_bands>
                <polymorphic_bands>155 136 117 89 55 50 37 36 34 32 29 26 24 21 20 20 17 17 17 16 12 11 11 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAATACAGTGAGAAAAAGAAGAG</pcr_primer_p1>
		<pcr_primer_p2>GTCAACATTTCAAAATTTCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAATACAGTGAGAAAAAGAAGAGGATTTTGTGAGGAGAATGGTATTTTTTTTTACAAATTTTGATACCCACAATGCCCATGTTTTAAAGTTTTGAAAATTTGACGTCTTCTGGTATGAAATCTGGAGAAGAGATTCTCTGGATTCTGGAGCATTTTTAAACTTCGATATAGCAAAACTCGAGTTCTCCAGTAAAATCCTGACATTTTGATACCTATATTGCCATGACTCTGAAATTTTGAAATGTTGAC</canonical_amplicon>
		<polymorphic_amplicon>TCAATACAGTGAGAAAAAGAAGAGGATTTTGTGAGGAGAATGGTATTTTTTTTTACAAAWTTTGATACCCACAATGCCCATGTTTTAAAGTTTTGAAAATTTGACGTCTTCTGGTATGAAATCTGGAGAAGAGATTCTCTGGATTCTGGAGCATTTTTAAACTTCGATATAGCAAAACTCGAGTTCTCCAGTAAAATCCTGACATTTTGATACCTATATTGCCATGACTCTGAAATTTTGAAATGTTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23696</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>23957</contig_pos>
        <strand>+</strand>
        <context>CGTCTTCTGG[C/T]ATGAAATCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATACCCACAATGCCCATGTTTTAAAGTTTTGAAAATTTGACGTCTTCTGG</left_flank>
        <right_flank>ATGAAATCTGGAGAAGAGATTCTCTGGATTCTGGAGCATTTTTAAACTTC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTCTTCGAATTTTGATTTTCAGAAAGTTTGGTGACGTTAGATCTATTTTTCGGCTTATTCCCGTCATTTTGAGCCCCATATTGCCATGTTTTCAAAAATTTTGGAATTCAGAAATCTCCAGAATTCAAGATTCAAATGAAATAAACTTTGAAAAAATAATTTCTACAAAATTCCCGATTGGCATGATTCTGAAAGTTTGAAATTTCGACGTCTTCTGATGCAAGATCTGGAGAAGAGAATTTTCAGAATCTCGATGACTTAAAAAACGGGAAATTGTGTTTTTCGTGTTGTCCATTCAATTTCCAACAATTTGATACCCATATTGCCATGCTTTCAAATTTTTTGAAAATTCGACGTCTTCTGAATTCAGAAGACGTCTGAACTCAATACAGTGAGAAAAAGAAGAGGATTTTGTGAGGAGAATGGTATTTTTTTTTACAAATTTTGATACCCACAATGCCCATGTTTTAAAGTTTTGAAAATTTGACGTCTTCTGGTATGAAATCTGGAGAAGAGATTCTCTGGATTCTGGAGCATTTTTAAACTTCGATATAGCAAAACTCGAGTTCTCCAGTAAAATCCTGACATTTTGATACCTATATTGCCATGACTCTGAAATTTTGAAATGTTGACGTCTTCCGATGTGAAATCTGGAGAAGAGAAGAGAATTTTCAGAATCTCGTAATTTTAGAAAACCAGAAATTGTGTTATTTGAGTTTTCCACATTATCCCCAACATTTTGATACCCATATTGCCCATGTTTAGTCATCTTCAGATTTTGAGTTCTTCTTCTTCTCCGAATCTCAAAATCCAAAGTTATCAAAACATGGGCAATATGGGTATCAAAATGTCCCAAATTTCATGATTTTTCTTCTTTTAACCATCTTTATCTTTTTCTTCCTTTCTTAAAAATTTGAGAAACAATTTTTCTAGACATCAATCCCTCTTCCCCACGTCTTCGAAAAGTGCTTGCCGGTGTGACAACAAATGTGAAAACC</canonical>
            <polymorphic>AAGTCTTCGAATTTTGATTTTCAGAAAGTTTGGTGACGTTAGATCTATTTTTCGGCTTATTCCCGTCATTTTGAGCCCCATATTGCCATGTTTTCAAAAATTTTGGAATTCAGAAATCTCCAGAATTCAAGATTCAAATGAAATAAACTTTGAAAAAATAATTTCTACAAAATTCCCGATTGGCATGATTCTGAAAGTTTGAAATTTCGACGTCTTCTGATGCAAGATCTGGAGAAGAGAATTTTCAGAATCTCGATGACTTAAAAAACGGGAAATTGTGTTTTTCGTGTTGTCCATTCAATTTCCAACAATTTGATACCCATATTGCCATGCTTTCAAATTTTTTGAAAATTCGACGTCTTCTGAATTCAGAAGACGTCTGAACTCAATACAGTGAGAAAAAGAAGAGGATTTTGTGAGGAGAATGGTATTTTTTTTTACAAATTTTGATACCCACAATGCCCATGTTTTAAAGTTTTGAAAATTTGACGTCTTCTGGYATGAAATCTGGAGAAGAGATTCTCTGGATTCTGGAGCATTTTTAAACTTCGATATAGCAAAACTCGAGTTCTCCAGTAAAATCCTGACATTTTGATACCTATATTGCCATGACTCTGAAATTTTGAAATGTTGACGTCTTCCGATGTGAAATCTGGAGAAGAGAAGAGAATTTTCAGAATCTCGTAATTTTAGAAAACCAGAAATTGTGTTATTTGAGTTTTCCACATTATCCCCAACATTTTGATACCCATATTGCCCATGTTTAGTCATCTTCAGATTTTGAGTTCTTCTTCTTCTCCGAATCTCAAAATCCAAAGTTATCAAAACATGGGCAATATGGGTATCAAAATGTCCCAAATTTCATGATTTTTCTTCTTTTAACCATCTTTATCTTTTTCTTCCTTTCTTAAAAATTTGAGAAACAATTTTTCTAGACATCAATCCCTCTTCCCCACGTCTTCGAAAAGTGCTTGCCGGTGTGACAACAAATGTGAAAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAATACAGTGAGAAAAAGAAGAG</pcr_primer_p1>
		<pcr_primer_p2>GTCAACATTTCAAAATTTCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAATACAGTGAGAAAAAGAAGAGGATTTTGTGAGGAGAATGGTATTTTTTTTTACAAATTTTGATACCCACAATGCCCATGTTTTAAAGTTTTGAAAATTTGACGTCTTCTGGTATGAAATCTGGAGAAGAGATTCTCTGGATTCTGGAGCATTTTTAAACTTCGATATAGCAAAACTCGAGTTCTCCAGTAAAATCCTGACATTTTGATACCTATATTGCCATGACTCTGAAATTTTGAAATGTTGAC</canonical_amplicon>
		<polymorphic_amplicon>TCAATACAGTGAGAAAAAGAAGAGGATTTTGTGAGGAGAATGGTATTTTTTTTTACAAATTTTGATACCCACAATGCCCATGTTTTAAAGTTTTGAAAATTTGACGTCTTCTGGYATGAAATCTGGAGAAGAGATTCTCTGGATTCTGGAGCATTTTTAAACTTCGATATAGCAAAACTCGAGTTCTCCAGTAAAATCCTGACATTTTGATACCTATATTGCCATGACTCTGAAATTTTGAAATGTTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23697</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>26134</contig_pos>
        <strand>+</strand>
        <context>CCCCCTAGTT[A/G]TTTTTTGCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTT</left_flank>
        <right_flank>TTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCATAACTAAATTGGGCGTAGTTAGGCTTAAAATCGAGATTTTCTTGTTGGATTTTTTGCATTTTTCTTGTCTTATGAACTTAAAATTTGTATTTCACTGAAAATTCTAAATTTCTACTAAAGGTGTCTTAGATTTTCAGCCATTTTCAGCCAAAACTAGAAAATACTGCTATATGCTTCATTTTCAACCGATTTCCATCTATTTTTTTTTTTCGAATATCCCTCTATTATTATCTTTTACTAATCATTTTTCCATCTTCCAGTGCCCCTCCATTCCTGCGTCTCGTCGAAAAGGACATCATCTCTCCGGCCTCCCCATCCAACACACTCTCCTCCTCCTCCACCACCCTCCTCTTCTCTCAACGCGGTGAGTAGGCGCCTCGCCGTTCTTATACGCCGTCCACCCCGCTCCTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATTTTTTGAAGAAACGCCATTAAATGAATATTCTGAAAAATTCAATTTTCAGCCAAATGTCCAACTGGCCAAGATGTCATTTTCGTAAGATCTGATGACGTAGAAGCTTCCAATTCAAATTCCAAATACGTGGAAATCACTGAAGACGACTGTGTCTTCGCCTGCCTCACAAATTCCCGTCCAGGGGGCGGAGCTTCGGATTGCTCAGCTTTAGAATACGATAAGACACGTGGATTTTGTTATTTGATGGGGAATATACCTAATGATGATATGGCAATGACACCAAGGCCAAGGAATCCGGTGAACAGTTATGAGAAGATTTGTATTCGGCGTAAGTTGGTATACTGTAGGTTTCAAACTACC</canonical>
            <polymorphic>GATCATAACTAAATTGGGCGTAGTTAGGCTTAAAATCGAGATTTTCTTGTTGGATTTTTTGCATTTTTCTTGTCTTATGAACTTAAAATTTGTATTTCACTGAAAATTCTAAATTTCTACTAAAGGTGTCTTAGATTTTCAGCCATTTTCAGCCAAAACTAGAAAATACTGCTATATGCTTCATTTTCAACCGATTTCCATCTATTTTTTTTTTTCGAATATCCCTCTATTATTATCTTTTACTAATCATTTTTCCATCTTCCAGTGCCCCTCCATTCCTGCGTCTCGTCGAAAAGGACATCATCTCTCCGGCCTCCCCATCCAACACACTCTCCTCCTCCTCCACCACCCTCCTCTTCTCTCAACGCGGTGAGTAGGCGCCTCGCCGTTCTTATACGCCGTCCACCCCGCTCCTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTRTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATTTTTTGAAGAAACGCCATTAAATGAATATTCTGAAAAATTCAATTTTCAGCCAAATGTCCAACTGGCCAAGATGTCATTTTCGTAAGATCTGATGACGTAGAAGCTTCCAATTCAAATTCCAAATACGTGGAAATCACTGAAGACGACTGTGTCTTCGCCTGCCTCACAAATTCCCGTCCAGGGGGCGGAGCTTCGGATTGCTCAGCTTTAGAATACGATAAGACACGTGGATTTTGTTATTTGATGGGGAATATACCTAATGATGATATGGCAATGACACCAAGGCCAAGGAATCCGGTGAACAGTTATGAGAAGATTTGTATTCGGCGTAAGTTGGTATACTGTAGGTTTCAAACTACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAATGTGTGGGGGTATAG</pcr_primer_p1>
		<pcr_primer_p2>ATATTCATTTAATGGCGTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATTTTTTGAAGAAACGCCATTAAATGAATAT</canonical_amplicon>
		<polymorphic_amplicon>CTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTRTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATTTTTTGAAGAAACGCCATTAAATGAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23698</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>26199</contig_pos>
        <strand>+</strand>
        <context>TTCTTGCGGG[G/T]TTTTTTTTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGG</left_flank>
        <right_flank>TTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTTGTCTTATGAACTTAAAATTTGTATTTCACTGAAAATTCTAAATTTCTACTAAAGGTGTCTTAGATTTTCAGCCATTTTCAGCCAAAACTAGAAAATACTGCTATATGCTTCATTTTCAACCGATTTCCATCTATTTTTTTTTTTCGAATATCCCTCTATTATTATCTTTTACTAATCATTTTTCCATCTTCCAGTGCCCCTCCATTCCTGCGTCTCGTCGAAAAGGACATCATCTCTCCGGCCTCCCCATCCAACACACTCTCCTCCTCCTCCACCACCCTCCTCTTCTCTCAACGCGGTGAGTAGGCGCCTCGCCGTTCTTATACGCCGTCCACCCCGCTCCTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATTTTTTGAAGAAACGCCATTAAATGAATATTCTGAAAAATTCAATTTTCAGCCAAATGTCCAACTGGCCAAGATGTCATTTTCGTAAGATCTGATGACGTAGAAGCTTCCAATTCAAATTCCAAATACGTGGAAATCACTGAAGACGACTGTGTCTTCGCCTGCCTCACAAATTCCCGTCCAGGGGGCGGAGCTTCGGATTGCTCAGCTTTAGAATACGATAAGACACGTGGATTTTGTTATTTGATGGGGAATATACCTAATGATGATATGGCAATGACACCAAGGCCAAGGAATCCGGTGAACAGTTATGAGAAGATTTGTATTCGGCGTAAGTTGGTATACTGTAGGTTTCAAACTACCGCATCTCGGTCAGTTTTGATCCATGTTTAACAATTTTTAAAATTTTGAACTTTGCACACGGAGTG</canonical>
            <polymorphic>TTTCTTGTCTTATGAACTTAAAATTTGTATTTCACTGAAAATTCTAAATTTCTACTAAAGGTGTCTTAGATTTTCAGCCATTTTCAGCCAAAACTAGAAAATACTGCTATATGCTTCATTTTCAACCGATTTCCATCTATTTTTTTTTTTCGAATATCCCTCTATTATTATCTTTTACTAATCATTTTTCCATCTTCCAGTGCCCCTCCATTCCTGCGTCTCGTCGAAAAGGACATCATCTCTCCGGCCTCCCCATCCAACACACTCTCCTCCTCCTCCACCACCCTCCTCTTCTCTCAACGCGGTGAGTAGGCGCCTCGCCGTTCTTATACGCCGTCCACCCCGCTCCTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGKTTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATTTTTTGAAGAAACGCCATTAAATGAATATTCTGAAAAATTCAATTTTCAGCCAAATGTCCAACTGGCCAAGATGTCATTTTCGTAAGATCTGATGACGTAGAAGCTTCCAATTCAAATTCCAAATACGTGGAAATCACTGAAGACGACTGTGTCTTCGCCTGCCTCACAAATTCCCGTCCAGGGGGCGGAGCTTCGGATTGCTCAGCTTTAGAATACGATAAGACACGTGGATTTTGTTATTTGATGGGGAATATACCTAATGATGATATGGCAATGACACCAAGGCCAAGGAATCCGGTGAACAGTTATGAGAAGATTTGTATTCGGCGTAAGTTGGTATACTGTAGGTTTCAAACTACCGCATCTCGGTCAGTTTTGATCCATGTTTAACAATTTTTAAAATTTTGAACTTTGCACACGGAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAATGTGTGGGGGTATAG</pcr_primer_p1>
		<pcr_primer_p2>ATATTCATTTAATGGCGTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGTTTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATTTTTTGAAGAAACGCCATTAAATGAATAT</canonical_amplicon>
		<polymorphic_amplicon>CTCAATGTGTGGGGGTATAGCTCAGTGGCAGAGCATTCGACTGCAGATCGAGAGGTCCCCGGTTCAACTCCGGGTGCCCCCTAGTTCTTTTTTGCTTTTTTGTAGACCTTTTTAATGATGTTTAGATGATCCGGAAGGTCTTTCTTGCGGGKTTTTTTTTGGATTTTGGTCAAAAATGTCCCATTTTGTGGAAAAAACTTATAAGAATGGGATTAATAAATTGAATTTTTTGAAGAAACGCCATTAAATGAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23699</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>27898</contig_pos>
        <strand>+</strand>
        <context>gatatcgaaa[C/T]gtcgaaaata</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAACTGAAATTTGGAGAAGACCAAAGATGGACAATATGGATATCGAAA</left_flank>
        <right_flank>GTCGAAAATATCCTGGGAAACACGGAAAACACATTTTCTGGTAATTTAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGGAAGATCCAGCGTCGTTTTTTGATGAAAATGCGACTATTGTGGATTTCTTCTCTATTCAGGATTGTTTGGGAATTCGAGAAGTGAACCGGAGAGCTAAAAAGAGGTCAAAATTTTGAAAAAATTTTTAAAAAATTTTTAAAAATTATTCCAGAAAATCCCAAAATCGAATCGAAAAACTGGCTAGATTGAGGAGAAAAATGGCAAGGATCTAAATTTTAAATTTTCTGACACTTTAATTTAAACGACGGGTTTCTAATTTATTGTTTCTTTAATTTATCTGTGATCTTTTATTTTTTTGACAATTTTGAATTTTTTTCTTATTAAATTATTTACGAAATTTTTCCTTGTTATAACTAGAATCTCCATTTAATTTCCAACATTTTGATACCCATATTGCCCATGTTTCAAAAATTTTAAGATTTTTTGGATTCTGGAGAAGAAGAAGAAACTGAAATTTGGAGAAGACCAAAGATGGACAATATGGATATCGAAATGTCGAAAATATCCTGGGAAACACGGAAAACACATTTTCTGGTAATTTAGAATTTTGAGATTCTGAAAGTTCTCTTCTCCAGATTTCACCCTAGAAGACGTCAAAACTTCAAAATTTTAGAATCATGGCAATCTGGGTATCAAAATGTTGGAAATGTCCTGGGAAACGCAGAAATCATATTTTCTGGTTATCTAGAATCTTGAGATTCTGGAAATTCTCTTCTCCAGATTTCACCATAGAGGGTGTCAAAAATTCAGAAATTCAGAATCATGGCAATATGGGTATCAAATTGTTGGAAATTTCCAGGAGAATAAGAATATTCTATTTTCAAGTCTAAAAAATTGCAATTTTCAAAAAAAATCTCTTCTCCAGATTTCACCCTAGAAGACGTCAAAACTTCAAAATTTTAGAATCATGGCAATATGGGTATCAAATTGTAGGAAATTTCCGGGACAATAAGAATATTCTATTTTCAAGTCTAAAAAATAGCCTTTATTCTGG</canonical>
            <polymorphic>ATTTGGAAGATCCAGCGTCGTTTTTTGATGAAAATGCGACTATTGTGGATTTCTTCTCTATTCAGGATTGTTTGGGAATTCGAGAAGTGAACCGGAGAGCTAAAAAGAGGTCAAAATTTTGAAAAAATTTTTAAAAAATTTTTAAAAATTATTCCAGAAAATCCCAAAATCGAATCGAAAAACTGGCTAGATTGAGGAGAAAAATGGCAAGGATCTAAATTTTAAATTTTCTGACACTTTAATTTAAACGACGGGTTTCTAATTTATTGTTTCTTTAATTTATCTGTGATCTTTTATTTTTTTGACAATTTTGAATTTTTTTCTTATTAAATTATTTACGAAATTTTTCCTTGTTATAACTAGAATCTCCATTTAATTTCCAACATTTTGATACCCATATTGCCCATGTTTCAAAAATTTTAAGATTTTTTGGATTCTGGAGAAGAAGAAGAAACTGAAATTTGGAGAAGACCAAAGATGGACAATATGGATATCGAAAYGTCGAAAATATCCTGGGAAACACGGAAAACACATTTTCTGGTAATTTAGAATTTTGAGATTCTGAAAGTTCTCTTCTCCAGATTTCACCCTAGAAGACGTCAAAACTTCAAAATTTTAGAATCATGGCAATCTGGGTATCAAAATGTTGGAAATGTCCTGGGAAACGCAGAAATCATATTTTCTGGTTATCTAGAATCTTGAGATTCTGGAAATTCTCTTCTCCAGATTTCACCATAGAGGGTGTCAAAAATTCAGAAATTCAGAATCATGGCAATATGGGTATCAAATTGTTGGAAATTTCCAGGAGAATAAGAATATTCTATTTTCAAGTCTAAAAAATTGCAATTTTCAAAAAAAATCTCTTCTCCAGATTTCACCCTAGAAGACGTCAAAACTTCAAAATTTTAGAATCATGGCAATATGGGTATCAAATTGTAGGAAATTTCCGGGACAATAAGAATATTCTATTTTCAAGTCTAAAAAATAGCCTTTATTCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTCTTTAATTTATCTGTGATCTT</pcr_primer_p1>
		<pcr_primer_p2>CAGAATCTCAAAATTCTAAATTACC</pcr_primer_p2>
		<pcr_amplicon_size>297</pcr_amplicon_size>
		<canonical_amplicon>TGTTTCTTTAATTTATCTGTGATCTTTTATTTTTTTGACAATTTTGAATTTTTTTCTTATTAAATTATTTACGAAATTTTTCCTTGTTATAACTAGAATCTCCATTTAATTTCCAACATTTTGATACCCATATTGCCCATGTTTCAAAAATTTTAAGATTTTTTGGATTCTGGAGAAGAAGAAGAAACTGAAATTTGGAGAAGACCAAAGATGGACAATATGGATATCGAAATGTCGAAAATATCCTGGGAAACACGGAAAACACATTTTCTGGTAATTTAGAATTTTGAGATTCTG</canonical_amplicon>
		<polymorphic_amplicon>TGTTTCTTTAATTTATCTGTGATCTTTTATTTTTTTGACAATTTTGAATTTTTTTCTTATTAAATTATTTACGAAATTTTTCCTTGTTATAACTAGAATCTCCATTTAATTTCCAACATTTTGATACCCATATTGCCCATGTTTCAAAAATTTTAAGATTTTTTGGATTCTGGAGAAGAAGAAGAAACTGAAATTTGGAGAAGACCAAAGATGGACAATATGGATATCGAAAYGTCGAAAATATCCTGGGAAACACGGAAAACACATTTTCTGGTAATTTAGAATTTTGAGATTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23700</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>27912</contig_pos>
        <strand>+</strand>
        <context>gaaaatatcc[C/T]gggaaacacg</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAGAAGACCAAAGATGGACAATATGGATATCGAAATGTCGAAAATATCC</left_flank>
        <right_flank>GGGAAACACGGAAAACACATTTTCTGGTAATTTAGAATTTTGAGATTCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGTCGTTTTTTGATGAAAATGCGACTATTGTGGATTTCTTCTCTATTCAGGATTGTTTGGGAATTCGAGAAGTGAACCGGAGAGCTAAAAAGAGGTCAAAATTTTGAAAAAATTTTTAAAAAATTTTTAAAAATTATTCCAGAAAATCCCAAAATCGAATCGAAAAACTGGCTAGATTGAGGAGAAAAATGGCAAGGATCTAAATTTTAAATTTTCTGACACTTTAATTTAAACGACGGGTTTCTAATTTATTGTTTCTTTAATTTATCTGTGATCTTTTATTTTTTTGACAATTTTGAATTTTTTTCTTATTAAATTATTTACGAAATTTTTCCTTGTTATAACTAGAATCTCCATTTAATTTCCAACATTTTGATACCCATATTGCCCATGTTTCAAAAATTTTAAGATTTTTTGGATTCTGGAGAAGAAGAAGAAACTGAAATTTGGAGAAGACCAAAGATGGACAATATGGATATCGAAATGTCGAAAATATCCTGGGAAACACGGAAAACACATTTTCTGGTAATTTAGAATTTTGAGATTCTGAAAGTTCTCTTCTCCAGATTTCACCCTAGAAGACGTCAAAACTTCAAAATTTTAGAATCATGGCAATCTGGGTATCAAAATGTTGGAAATGTCCTGGGAAACGCAGAAATCATATTTTCTGGTTATCTAGAATCTTGAGATTCTGGAAATTCTCTTCTCCAGATTTCACCATAGAGGGTGTCAAAAATTCAGAAATTCAGAATCATGGCAATATGGGTATCAAATTGTTGGAAATTTCCAGGAGAATAAGAATATTCTATTTTCAAGTCTAAAAAATTGCAATTTTCAAAAAAAATCTCTTCTCCAGATTTCACCCTAGAAGACGTCAAAACTTCAAAATTTTAGAATCATGGCAATATGGGTATCAAATTGTAGGAAATTTCCGGGACAATAAGAATATTCTATTTTCAAGTCTAAAAAATAGCCTTTATTCTGGAAATTCTCTTCTCC</canonical>
            <polymorphic>GCGTCGTTTTTTGATGAAAATGCGACTATTGTGGATTTCTTCTCTATTCAGGATTGTTTGGGAATTCGAGAAGTGAACCGGAGAGCTAAAAAGAGGTCAAAATTTTGAAAAAATTTTTAAAAAATTTTTAAAAATTATTCCAGAAAATCCCAAAATCGAATCGAAAAACTGGCTAGATTGAGGAGAAAAATGGCAAGGATCTAAATTTTAAATTTTCTGACACTTTAATTTAAACGACGGGTTTCTAATTTATTGTTTCTTTAATTTATCTGTGATCTTTTATTTTTTTGACAATTTTGAATTTTTTTCTTATTAAATTATTTACGAAATTTTTCCTTGTTATAACTAGAATCTCCATTTAATTTCCAACATTTTGATACCCATATTGCCCATGTTTCAAAAATTTTAAGATTTTTTGGATTCTGGAGAAGAAGAAGAAACTGAAATTTGGAGAAGACCAAAGATGGACAATATGGATATCGAAATGTCGAAAATATCCYGGGAAACACGGAAAACACATTTTCTGGTAATTTAGAATTTTGAGATTCTGAAAGTTCTCTTCTCCAGATTTCACCCTAGAAGACGTCAAAACTTCAAAATTTTAGAATCATGGCAATCTGGGTATCAAAATGTTGGAAATGTCCTGGGAAACGCAGAAATCATATTTTCTGGTTATCTAGAATCTTGAGATTCTGGAAATTCTCTTCTCCAGATTTCACCATAGAGGGTGTCAAAAATTCAGAAATTCAGAATCATGGCAATATGGGTATCAAATTGTTGGAAATTTCCAGGAGAATAAGAATATTCTATTTTCAAGTCTAAAAAATTGCAATTTTCAAAAAAAATCTCTTCTCCAGATTTCACCCTAGAAGACGTCAAAACTTCAAAATTTTAGAATCATGGCAATATGGGTATCAAATTGTAGGAAATTTCCGGGACAATAAGAATATTCTATTTTCAAGTCTAAAAAATAGCCTTTATTCTGGAAATTCTCTTCTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>499 211 145 145</canonical_bands>
                <polymorphic_bands>644 211 145</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTTCTTTAATTTATCTGTGATCTT</pcr_primer_p1>
		<pcr_primer_p2>AAGAGAATTTCCAGAATCTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>453</pcr_amplicon_size>
		<canonical_amplicon>TGTTTCTTTAATTTATCTGTGATCTTTTATTTTTTTGACAATTTTGAATTTTTTTCTTATTAAATTATTTACGAAATTTTTCCTTGTTATAACTAGAATCTCCATTTAATTTCCAACATTTTGATACCCATATTGCCCATGTTTCAAAAATTTTAAGATTTTTTGGATTCTGGAGAAGAAGAAGAAACTGAAATTTGGAGAAGACCAAAGATGGACAATATGGATATCGAAATGTCGAAAATATCCTGGGAAACACGGAAAACACATTTTCTGGTAATTTAGAATTTTGAGATTCTGAAAGTTCTCTTCTCCAGATTTCACCCTAGAAGACGTCAAAACTTCAAAATTTTAGAATCATGGCAATCTGGGTATCAAAATGTTGGAAATGTCCTGGGAAACGCAGAAATCATATTTTCTGGTTATCTAGAATCTTGAGATTCTGGAAATTCTCTT</canonical_amplicon>
		<polymorphic_amplicon>TGTTTCTTTAATTTATCTGTGATCTTTTATTTTTTTGACAATTTTGAATTTTTTTCTTATTAAATTATTTACGAAATTTTTCCTTGTTATAACTAGAATCTCCATTTAATTTCCAACATTTTGATACCCATATTGCCCATGTTTCAAAAATTTTAAGATTTTTTGGATTCTGGAGAAGAAGAAGAAACTGAAATTTGGAGAAGACCAAAGATGGACAATATGGATATCGAAATGTCGAAAATATCCYGGGAAACACGGAAAACACATTTTCTGGTAATTTAGAATTTTGAGATTCTGAAAGTTCTCTTCTCCAGATTTCACCCTAGAAGACGTCAAAACTTCAAAATTTTAGAATCATGGCAATCTGGGTATCAAAATGTTGGAAATGTCCTGGGAAACGCAGAAATCATATTTTCTGGTTATCTAGAATCTTGAGATTCTGGAAATTCTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23701</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>27972</contig_pos>
        <strand>+</strand>
        <context>GAAAGTTCTC[C/T]TCTCCAGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAAAACACATTTTCTGGTAATTTAGAATTTTGAGATTCTGAAAGTTCTC</left_flank>
        <right_flank>TCTCCAGATTTCACCCTAGAAGACGTCAAAACTTCAAAATTTTAGAATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAATTCGAGAAGTGAACCGGAGAGCTAAAAAGAGGTCAAAATTTTGAAAAAATTTTTAAAAAATTTTTAAAAATTATTCCAGAAAATCCCAAAATCGAATCGAAAAACTGGCTAGATTGAGGAGAAAAATGGCAAGGATCTAAATTTTAAATTTTCTGACACTTTAATTTAAACGACGGGTTTCTAATTTATTGTTTCTTTAATTTATCTGTGATCTTTTATTTTTTTGACAATTTTGAATTTTTTTCTTATTAAATTATTTACGAAATTTTTCCTTGTTATAACTAGAATCTCCATTTAATTTCCAACATTTTGATACCCATATTGCCCATGTTTCAAAAATTTTAAGATTTTTTGGATTCTGGAGAAGAAGAAGAAACTGAAATTTGGAGAAGACCAAAGATGGACAATATGGATATCGAAATGTCGAAAATATCCTGGGAAACACGGAAAACACATTTTCTGGTAATTTAGAATTTTGAGATTCTGAAAGTTCTCTTCTCCAGATTTCACCCTAGAAGACGTCAAAACTTCAAAATTTTAGAATCATGGCAATCTGGGTATCAAAATGTTGGAAATGTCCTGGGAAACGCAGAAATCATATTTTCTGGTTATCTAGAATCTTGAGATTCTGGAAATTCTCTTCTCCAGATTTCACCATAGAGGGTGTCAAAAATTCAGAAATTCAGAATCATGGCAATATGGGTATCAAATTGTTGGAAATTTCCAGGAGAATAAGAATATTCTATTTTCAAGTCTAAAAAATTGCAATTTTCAAAAAAAATCTCTTCTCCAGATTTCACCCTAGAAGACGTCAAAACTTCAAAATTTTAGAATCATGGCAATATGGGTATCAAATTGTAGGAAATTTCCGGGACAATAAGAATATTCTATTTTCAAGTCTAAAAAATAGCCTTTATTCTGGAAATTCTCTTCTCCAGATTTCACCATAGAGGGTGTCAAAAATTCAAAAATTCAGAATCATGCCAATATGGGTAT</canonical>
            <polymorphic>GGAATTCGAGAAGTGAACCGGAGAGCTAAAAAGAGGTCAAAATTTTGAAAAAATTTTTAAAAAATTTTTAAAAATTATTCCAGAAAATCCCAAAATCGAATCGAAAAACTGGCTAGATTGAGGAGAAAAATGGCAAGGATCTAAATTTTAAATTTTCTGACACTTTAATTTAAACGACGGGTTTCTAATTTATTGTTTCTTTAATTTATCTGTGATCTTTTATTTTTTTGACAATTTTGAATTTTTTTCTTATTAAATTATTTACGAAATTTTTCCTTGTTATAACTAGAATCTCCATTTAATTTCCAACATTTTGATACCCATATTGCCCATGTTTCAAAAATTTTAAGATTTTTTGGATTCTGGAGAAGAAGAAGAAACTGAAATTTGGAGAAGACCAAAGATGGACAATATGGATATCGAAATGTCGAAAATATCCTGGGAAACACGGAAAACACATTTTCTGGTAATTTAGAATTTTGAGATTCTGAAAGTTCTCYTCTCCAGATTTCACCCTAGAAGACGTCAAAACTTCAAAATTTTAGAATCATGGCAATCTGGGTATCAAAATGTTGGAAATGTCCTGGGAAACGCAGAAATCATATTTTCTGGTTATCTAGAATCTTGAGATTCTGGAAATTCTCTTCTCCAGATTTCACCATAGAGGGTGTCAAAAATTCAGAAATTCAGAATCATGGCAATATGGGTATCAAATTGTTGGAAATTTCCAGGAGAATAAGAATATTCTATTTTCAAGTCTAAAAAATTGCAATTTTCAAAAAAAATCTCTTCTCCAGATTTCACCCTAGAAGACGTCAAAACTTCAAAATTTTAGAATCATGGCAATATGGGTATCAAATTGTAGGAAATTTCCGGGACAATAAGAATATTCTATTTTCAAGTCTAAAAAATAGCCTTTATTCTGGAAATTCTCTTCTCCAGATTTCACCATAGAGGGTGTCAAAAATTCAAAAATTCAGAATCATGCCAATATGGGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTCTTTAATTTATCTGTGATCTT</pcr_primer_p1>
		<pcr_primer_p2>AAGAGAATTTCCAGAATCTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>453</pcr_amplicon_size>
		<canonical_amplicon>TGTTTCTTTAATTTATCTGTGATCTTTTATTTTTTTGACAATTTTGAATTTTTTTCTTATTAAATTATTTACGAAATTTTTCCTTGTTATAACTAGAATCTCCATTTAATTTCCAACATTTTGATACCCATATTGCCCATGTTTCAAAAATTTTAAGATTTTTTGGATTCTGGAGAAGAAGAAGAAACTGAAATTTGGAGAAGACCAAAGATGGACAATATGGATATCGAAATGTCGAAAATATCCTGGGAAACACGGAAAACACATTTTCTGGTAATTTAGAATTTTGAGATTCTGAAAGTTCTCTTCTCCAGATTTCACCCTAGAAGACGTCAAAACTTCAAAATTTTAGAATCATGGCAATCTGGGTATCAAAATGTTGGAAATGTCCTGGGAAACGCAGAAATCATATTTTCTGGTTATCTAGAATCTTGAGATTCTGGAAATTCTCTT</canonical_amplicon>
		<polymorphic_amplicon>TGTTTCTTTAATTTATCTGTGATCTTTTATTTTTTTGACAATTTTGAATTTTTTTCTTATTAAATTATTTACGAAATTTTTCCTTGTTATAACTAGAATCTCCATTTAATTTCCAACATTTTGATACCCATATTGCCCATGTTTCAAAAATTTTAAGATTTTTTGGATTCTGGAGAAGAAGAAGAAACTGAAATTTGGAGAAGACCAAAGATGGACAATATGGATATCGAAATGTCGAAAATATCCTGGGAAACACGGAAAACACATTTTCTGGTAATTTAGAATTTTGAGATTCTGAAAGTTCTCYTCTCCAGATTTCACCCTAGAAGACGTCAAAACTTCAAAATTTTAGAATCATGGCAATCTGGGTATCAAAATGTTGGAAATGTCCTGGGAAACGCAGAAATCATATTTTCTGGTTATCTAGAATCTTGAGATTCTGGAAATTCTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23702</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>27987</contig_pos>
        <strand>+</strand>
        <context>CAGATTTCAC[A/C]ctagaagacg</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGGTAATTTAGAATTTTGAGATTCTGAAAGTTCTCTTCTCCAGATTTCAC</left_flank>
        <right_flank>CTAGAAGACGTCAAAACTTCAAAATTTTAGAATCATGGCAATCTGGGTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCGGAGAGCTAAAAAGAGGTCAAAATTTTGAAAAAATTTTTAAAAAATTTTTAAAAATTATTCCAGAAAATCCCAAAATCGAATCGAAAAACTGGCTAGATTGAGGAGAAAAATGGCAAGGATCTAAATTTTAAATTTTCTGACACTTTAATTTAAACGACGGGTTTCTAATTTATTGTTTCTTTAATTTATCTGTGATCTTTTATTTTTTTGACAATTTTGAATTTTTTTCTTATTAAATTATTTACGAAATTTTTCCTTGTTATAACTAGAATCTCCATTTAATTTCCAACATTTTGATACCCATATTGCCCATGTTTCAAAAATTTTAAGATTTTTTGGATTCTGGAGAAGAAGAAGAAACTGAAATTTGGAGAAGACCAAAGATGGACAATATGGATATCGAAATGTCGAAAATATCCTGGGAAACACGGAAAACACATTTTCTGGTAATTTAGAATTTTGAGATTCTGAAAGTTCTCTTCTCCAGATTTCACCCTAGAAGACGTCAAAACTTCAAAATTTTAGAATCATGGCAATCTGGGTATCAAAATGTTGGAAATGTCCTGGGAAACGCAGAAATCATATTTTCTGGTTATCTAGAATCTTGAGATTCTGGAAATTCTCTTCTCCAGATTTCACCATAGAGGGTGTCAAAAATTCAGAAATTCAGAATCATGGCAATATGGGTATCAAATTGTTGGAAATTTCCAGGAGAATAAGAATATTCTATTTTCAAGTCTAAAAAATTGCAATTTTCAAAAAAAATCTCTTCTCCAGATTTCACCCTAGAAGACGTCAAAACTTCAAAATTTTAGAATCATGGCAATATGGGTATCAAATTGTAGGAAATTTCCGGGACAATAAGAATATTCTATTTTCAAGTCTAAAAAATAGCCTTTATTCTGGAAATTCTCTTCTCCAGATTTCACCATAGAGGGTGTCAAAAATTCAAAAATTCAGAATCATGCCAATATGGGTATCAAATTGTTGGGAAA</canonical>
            <polymorphic>AACCGGAGAGCTAAAAAGAGGTCAAAATTTTGAAAAAATTTTTAAAAAATTTTTAAAAATTATTCCAGAAAATCCCAAAATCGAATCGAAAAACTGGCTAGATTGAGGAGAAAAATGGCAAGGATCTAAATTTTAAATTTTCTGACACTTTAATTTAAACGACGGGTTTCTAATTTATTGTTTCTTTAATTTATCTGTGATCTTTTATTTTTTTGACAATTTTGAATTTTTTTCTTATTAAATTATTTACGAAATTTTTCCTTGTTATAACTAGAATCTCCATTTAATTTCCAACATTTTGATACCCATATTGCCCATGTTTCAAAAATTTTAAGATTTTTTGGATTCTGGAGAAGAAGAAGAAACTGAAATTTGGAGAAGACCAAAGATGGACAATATGGATATCGAAATGTCGAAAATATCCTGGGAAACACGGAAAACACATTTTCTGGTAATTTAGAATTTTGAGATTCTGAAAGTTCTCTTCTCCAGATTTCACMCTAGAAGACGTCAAAACTTCAAAATTTTAGAATCATGGCAATCTGGGTATCAAAATGTTGGAAATGTCCTGGGAAACGCAGAAATCATATTTTCTGGTTATCTAGAATCTTGAGATTCTGGAAATTCTCTTCTCCAGATTTCACCATAGAGGGTGTCAAAAATTCAGAAATTCAGAATCATGGCAATATGGGTATCAAATTGTTGGAAATTTCCAGGAGAATAAGAATATTCTATTTTCAAGTCTAAAAAATTGCAATTTTCAAAAAAAATCTCTTCTCCAGATTTCACCCTAGAAGACGTCAAAACTTCAAAATTTTAGAATCATGGCAATATGGGTATCAAATTGTAGGAAATTTCCGGGACAATAAGAATATTCTATTTTCAAGTCTAAAAAATAGCCTTTATTCTGGAAATTCTCTTCTCCAGATTTCACCATAGAGGGTGTCAAAAATTCAAAAATTCAGAATCATGCCAATATGGGTATCAAATTGTTGGGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACACATTTTCTGGTAATTTAGA</pcr_primer_p1>
		<pcr_primer_p2>CTGAATTTCTGAATTTTTGACAC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AAAACACATTTTCTGGTAATTTAGAATTTTGAGATTCTGAAAGTTCTCTTCTCCAGATTTCACCCTAGAAGACGTCAAAACTTCAAAATTTTAGAATCATGGCAATCTGGGTATCAAAATGTTGGAAATGTCCTGGGAAACGCAGAAATCATATTTTCTGGTTATCTAGAATCTTGAGATTCTGGAAATTCTCTTCTCCAGATTTCACCATAGAGGGTGTCAAAAATTCAGAAATTCAG</canonical_amplicon>
		<polymorphic_amplicon>AAAACACATTTTCTGGTAATTTAGAATTTTGAGATTCTGAAAGTTCTCTTCTCCAGATTTCACMCTAGAAGACGTCAAAACTTCAAAATTTTAGAATCATGGCAATCTGGGTATCAAAATGTTGGAAATGTCCTGGGAAACGCAGAAATCATATTTTCTGGTTATCTAGAATCTTGAGATTCTGGAAATTCTCTTCTCCAGATTTCACCATAGAGGGTGTCAAAAATTCAGAAATTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23703</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>29783</contig_pos>
        <strand></strand>
        <context>attttcggaa[C/T]ctgggtaata</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGGCTCTTCTTCTTCTTCTCCGAATTTCCAATTTTCGAAATTTTCGGAA</left_flank>
        <right_flank>CTGGGTAATATGGGTATCAAAATGCCCCAAATTTCATGGAGATTCTTTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTCCTATTTTGGTCTTCTCCGAACTTCTTGTTCTTCTTCTTCTCCGAATTCCAAAATTTCGAAATTTTCCGAATATGAGCAAGATGGGTATCAAAATGTCCCAAATTCTATGGAGATTATTCTTTTGATTCTATGTCTCCACACTAAGCGAATGACCAATTTCACGCCTTCTGATTTGAAATCTGGTGAAGAGATTTTTGGAAATTCGAAACATTTTTAAGTCTTGGAAACAAAATGTTTGTGTTGTCCACGAAATTTCTGATATTTTGATACCCATATTGCCATGATTCTAAAGTTTTGAAATTTTGACGTCTTCTGATGTTTCTGGAGAAGAGATTTTTTGGATTCTGGAGCATTTTCCGAACCTAAAGTTGTGTGATTCGTATTTTCCACATGGTTTCCGACATTTTGATACAAATATTGCCCTATTTTGGTCTTCTCCGAATTTCAGGCTCTTCTTCTTCTTCTCCGAATTTCCAATTTTCGAAATTTTCGGAACCTGGGTAATATGGGTATCAAAATGCCCCAAATTTCATGGAGATTCTTTTTTTGATCTTATTTTTCTTTTTTTCAGAATTTTCCAGAGTCTCCTCCAGATGCGACCTCATGCTAATCATGTTCTACTTCTAATTGTCTATGTATTTGGGACCCTTTTCCTTTTTGTTCAATTCCTAAAAAGTCCAATTTTCCGACGACACAATTTTGAGGAAAAAGACGACAATTTTTGGGTAAAAATGTGGTTTTTTGAACTCTTAACGTCTTCTGAAAAAATCAGAATCCTCAATTTTCAATGACGCCATCTGACGATTCTGAAGATTCCAACAATTCTTCGGAGCCAATTATTCCCGAAAAATGTCAATGCAAATCTACAGTAACCGGAAAGATCTACAATTTTTGCTATAAATTGCCAGAAGTAAACTGAAATAGAATGTTCTAGAATTGAATTTTTTTTTTCTAGAATCCGAAAATCCTTGGCAAACGATTTAGCTGCGACTTTGT</canonical>
            <polymorphic>TGTCCTATTTTGGTCTTCTCCGAACTTCTTGTTCTTCTTCTTCTCCGAATTCCAAAATTTCGAAATTTTCCGAATATGAGCAAGATGGGTATCAAAATGTCCCAAATTCTATGGAGATTATTCTTTTGATTCTATGTCTCCACACTAAGCGAATGACCAATTTCACGCCTTCTGATTTGAAATCTGGTGAAGAGATTTTTGGAAATTCGAAACATTTTTAAGTCTTGGAAACAAAATGTTTGTGTTGTCCACGAAATTTCTGATATTTTGATACCCATATTGCCATGATTCTAAAGTTTTGAAATTTTGACGTCTTCTGATGTTTCTGGAGAAGAGATTTTTTGGATTCTGGAGCATTTTCCGAACCTAAAGTTGTGTGATTCGTATTTTCCACATGGTTTCCGACATTTTGATACAAATATTGCCCTATTTTGGTCTTCTCCGAATTTCAGGCTCTTCTTCTTCTTCTCCGAATTTCCAATTTTCGAAATTTTCGGAAYCTGGGTAATATGGGTATCAAAATGCCCCAAATTTCATGGAGATTCTTTTTTTGATCTTATTTTTCTTTTTTTCAGAATTTTCCAGAGTCTCCTCCAGATGCGACCTCATGCTAATCATGTTCTACTTCTAATTGTCTATGTATTTGGGACCCTTTTCCTTTTTGTTCAATTCCTAAAAAGTCCAATTTTCCGACGACACAATTTTGAGGAAAAAGACGACAATTTTTGGGTAAAAATGTGGTTTTTTGAACTCTTAACGTCTTCTGAAAAAATCAGAATCCTCAATTTTCAATGACGCCATCTGACGATTCTGAAGATTCCAACAATTCTTCGGAGCCAATTATTCCCGAAAAATGTCAATGCAAATCTACAGTAACCGGAAAGATCTACAATTTTTGCTATAAATTGCCAGAAGTAAACTGAAATAGAATGTTCTAGAATTGAATTTTTTTTTTCTAGAATCCGAAAATCCTTGGCAAACGATTTAGCTGCGACTTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>500 471 29</canonical_bands>
                <polymorphic_bands>971 29</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>498 187 165 150</canonical_bands>
                <polymorphic_bands>648 187 165</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAACCTAAAGTTGTGTGATT</pcr_primer_p1>
		<pcr_primer_p2>GTAGAACATGATTAGCATGAGGT</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>CGAACCTAAAGTTGTGTGATTCGTATTTTCCACATGGTTTCCGACATTTTGATACAAATATTGCCCTATTTTGGTCTTCTCCGAATTTCAGGCTCTTCTTCTTCTTCTCCGAATTTCCAATTTTCGAAATTTTCGGAACCTGGGTAATATGGGTATCAAAATGCCCCAAATTTCATGGAGATTCTTTTTTTGATCTTATTTTTCTTTTTTTCAGAATTTTCCAGAGTCTCCTCCAGATGCGACCTCATGCTAATCATGTTCTAC</canonical_amplicon>
		<polymorphic_amplicon>CGAACCTAAAGTTGTGTGATTCGTATTTTCCACATGGTTTCCGACATTTTGATACAAATATTGCCCTATTTTGGTCTTCTCCGAATTTCAGGCTCTTCTTCTTCTTCTCCGAATTTCCAATTTTCGAAATTTTCGGAAYCTGGGTAATATGGGTATCAAAATGCCCCAAATTTCATGGAGATTCTTTTTTTGATCTTATTTTTCTTTTTTTCAGAATTTTCCAGAGTCTCCTCCAGATGCGACCTCATGCTAATCATGTTCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23704</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>29796</contig_pos>
        <strand></strand>
        <context>gggtaatatg[G/T]gtatcaaaat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCTTCTCCGAATTTCCAATTTTCGAAATTTTCGGAACCTGGGTAATATG</left_flank>
        <right_flank>GTATCAAAATGCCCCAAATTTCATGGAGATTCTTTTTTTGATCTTATTTT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCTCCGAACTTCTTGTTCTTCTTCTTCTCCGAATTCCAAAATTTCGAAATTTTCCGAATATGAGCAAGATGGGTATCAAAATGTCCCAAATTCTATGGAGATTATTCTTTTGATTCTATGTCTCCACACTAAGCGAATGACCAATTTCACGCCTTCTGATTTGAAATCTGGTGAAGAGATTTTTGGAAATTCGAAACATTTTTAAGTCTTGGAAACAAAATGTTTGTGTTGTCCACGAAATTTCTGATATTTTGATACCCATATTGCCATGATTCTAAAGTTTTGAAATTTTGACGTCTTCTGATGTTTCTGGAGAAGAGATTTTTTGGATTCTGGAGCATTTTCCGAACCTAAAGTTGTGTGATTCGTATTTTCCACATGGTTTCCGACATTTTGATACAAATATTGCCCTATTTTGGTCTTCTCCGAATTTCAGGCTCTTCTTCTTCTTCTCCGAATTTCCAATTTTCGAAATTTTCGGAACCTGGGTAATATGGGTATCAAAATGCCCCAAATTTCATGGAGATTCTTTTTTTGATCTTATTTTTCTTTTTTTCAGAATTTTCCAGAGTCTCCTCCAGATGCGACCTCATGCTAATCATGTTCTACTTCTAATTGTCTATGTATTTGGGACCCTTTTCCTTTTTGTTCAATTCCTAAAAAGTCCAATTTTCCGACGACACAATTTTGAGGAAAAAGACGACAATTTTTGGGTAAAAATGTGGTTTTTTGAACTCTTAACGTCTTCTGAAAAAATCAGAATCCTCAATTTTCAATGACGCCATCTGACGATTCTGAAGATTCCAACAATTCTTCGGAGCCAATTATTCCCGAAAAATGTCAATGCAAATCTACAGTAACCGGAAAGATCTACAATTTTTGCTATAAATTGCCAGAAGTAAACTGAAATAGAATGTTCTAGAATTGAATTTTTTTTTTCTAGAATCCGAAAATCCTTGGCAAACGATTTAGCTGCGACTTTGTGGAGGAATGGGAG</canonical>
            <polymorphic>TCTTCTCCGAACTTCTTGTTCTTCTTCTTCTCCGAATTCCAAAATTTCGAAATTTTCCGAATATGAGCAAGATGGGTATCAAAATGTCCCAAATTCTATGGAGATTATTCTTTTGATTCTATGTCTCCACACTAAGCGAATGACCAATTTCACGCCTTCTGATTTGAAATCTGGTGAAGAGATTTTTGGAAATTCGAAACATTTTTAAGTCTTGGAAACAAAATGTTTGTGTTGTCCACGAAATTTCTGATATTTTGATACCCATATTGCCATGATTCTAAAGTTTTGAAATTTTGACGTCTTCTGATGTTTCTGGAGAAGAGATTTTTTGGATTCTGGAGCATTTTCCGAACCTAAAGTTGTGTGATTCGTATTTTCCACATGGTTTCCGACATTTTGATACAAATATTGCCCTATTTTGGTCTTCTCCGAATTTCAGGCTCTTCTTCTTCTTCTCCGAATTTCCAATTTTCGAAATTTTCGGAACCTGGGTAATATGKGTATCAAAATGCCCCAAATTTCATGGAGATTCTTTTTTTGATCTTATTTTTCTTTTTTTCAGAATTTTCCAGAGTCTCCTCCAGATGCGACCTCATGCTAATCATGTTCTACTTCTAATTGTCTATGTATTTGGGACCCTTTTCCTTTTTGTTCAATTCCTAAAAAGTCCAATTTTCCGACGACACAATTTTGAGGAAAAAGACGACAATTTTTGGGTAAAAATGTGGTTTTTTGAACTCTTAACGTCTTCTGAAAAAATCAGAATCCTCAATTTTCAATGACGCCATCTGACGATTCTGAAGATTCCAACAATTCTTCGGAGCCAATTATTCCCGAAAAATGTCAATGCAAATCTACAGTAACCGGAAAGATCTACAATTTTTGCTATAAATTGCCAGAAGTAAACTGAAATAGAATGTTCTAGAATTGAATTTTTTTTTTCTAGAATCCGAAAATCCTTGGCAAACGATTTAGCTGCGACTTTGTGGAGGAATGGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAACCTAAAGTTGTGTGATT</pcr_primer_p1>
		<pcr_primer_p2>GTAGAACATGATTAGCATGAGGT</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>CGAACCTAAAGTTGTGTGATTCGTATTTTCCACATGGTTTCCGACATTTTGATACAAATATTGCCCTATTTTGGTCTTCTCCGAATTTCAGGCTCTTCTTCTTCTTCTCCGAATTTCCAATTTTCGAAATTTTCGGAACCTGGGTAATATGGGTATCAAAATGCCCCAAATTTCATGGAGATTCTTTTTTTGATCTTATTTTTCTTTTTTTCAGAATTTTCCAGAGTCTCCTCCAGATGCGACCTCATGCTAATCATGTTCTAC</canonical_amplicon>
		<polymorphic_amplicon>CGAACCTAAAGTTGTGTGATTCGTATTTTCCACATGGTTTCCGACATTTTGATACAAATATTGCCCTATTTTGGTCTTCTCCGAATTTCAGGCTCTTCTTCTTCTTCTCCGAATTTCCAATTTTCGAAATTTTCGGAACCTGGGTAATATGKGTATCAAAATGCCCCAAATTTCATGGAGATTCTTTTTTTGATCTTATTTTTCTTTTTTTCAGAATTTTCCAGAGTCTCCTCCAGATGCGACCTCATGCTAATCATGTTCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23705</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>29808</contig_pos>
        <strand></strand>
        <context>tatcaaaatg[C/T]cccaaatttc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCCAATTTTCGAAATTTTCGGAACCTGGGTAATATGGGTATCAAAATG</left_flank>
        <right_flank>CCCAAATTTCATGGAGATTCTTTTTTTGATCTTATTTTTCTTTTTTTCAG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTGTTCTTCTTCTTCTCCGAATTCCAAAATTTCGAAATTTTCCGAATATGAGCAAGATGGGTATCAAAATGTCCCAAATTCTATGGAGATTATTCTTTTGATTCTATGTCTCCACACTAAGCGAATGACCAATTTCACGCCTTCTGATTTGAAATCTGGTGAAGAGATTTTTGGAAATTCGAAACATTTTTAAGTCTTGGAAACAAAATGTTTGTGTTGTCCACGAAATTTCTGATATTTTGATACCCATATTGCCATGATTCTAAAGTTTTGAAATTTTGACGTCTTCTGATGTTTCTGGAGAAGAGATTTTTTGGATTCTGGAGCATTTTCCGAACCTAAAGTTGTGTGATTCGTATTTTCCACATGGTTTCCGACATTTTGATACAAATATTGCCCTATTTTGGTCTTCTCCGAATTTCAGGCTCTTCTTCTTCTTCTCCGAATTTCCAATTTTCGAAATTTTCGGAACCTGGGTAATATGGGTATCAAAATGCCCCAAATTTCATGGAGATTCTTTTTTTGATCTTATTTTTCTTTTTTTCAGAATTTTCCAGAGTCTCCTCCAGATGCGACCTCATGCTAATCATGTTCTACTTCTAATTGTCTATGTATTTGGGACCCTTTTCCTTTTTGTTCAATTCCTAAAAAGTCCAATTTTCCGACGACACAATTTTGAGGAAAAAGACGACAATTTTTGGGTAAAAATGTGGTTTTTTGAACTCTTAACGTCTTCTGAAAAAATCAGAATCCTCAATTTTCAATGACGCCATCTGACGATTCTGAAGATTCCAACAATTCTTCGGAGCCAATTATTCCCGAAAAATGTCAATGCAAATCTACAGTAACCGGAAAGATCTACAATTTTTGCTATAAATTGCCAGAAGTAAACTGAAATAGAATGTTCTAGAATTGAATTTTTTTTTTCTAGAATCCGAAAATCCTTGGCAAACGATTTAGCTGCGACTTTGTGGAGGAATGGGAGAAAATTGGTGAG</canonical>
            <polymorphic>TTCTTGTTCTTCTTCTTCTCCGAATTCCAAAATTTCGAAATTTTCCGAATATGAGCAAGATGGGTATCAAAATGTCCCAAATTCTATGGAGATTATTCTTTTGATTCTATGTCTCCACACTAAGCGAATGACCAATTTCACGCCTTCTGATTTGAAATCTGGTGAAGAGATTTTTGGAAATTCGAAACATTTTTAAGTCTTGGAAACAAAATGTTTGTGTTGTCCACGAAATTTCTGATATTTTGATACCCATATTGCCATGATTCTAAAGTTTTGAAATTTTGACGTCTTCTGATGTTTCTGGAGAAGAGATTTTTTGGATTCTGGAGCATTTTCCGAACCTAAAGTTGTGTGATTCGTATTTTCCACATGGTTTCCGACATTTTGATACAAATATTGCCCTATTTTGGTCTTCTCCGAATTTCAGGCTCTTCTTCTTCTTCTCCGAATTTCCAATTTTCGAAATTTTCGGAACCTGGGTAATATGGGTATCAAAATGYCCCAAATTTCATGGAGATTCTTTTTTTGATCTTATTTTTCTTTTTTTCAGAATTTTCCAGAGTCTCCTCCAGATGCGACCTCATGCTAATCATGTTCTACTTCTAATTGTCTATGTATTTGGGACCCTTTTCCTTTTTGTTCAATTCCTAAAAAGTCCAATTTTCCGACGACACAATTTTGAGGAAAAAGACGACAATTTTTGGGTAAAAATGTGGTTTTTTGAACTCTTAACGTCTTCTGAAAAAATCAGAATCCTCAATTTTCAATGACGCCATCTGACGATTCTGAAGATTCCAACAATTCTTCGGAGCCAATTATTCCCGAAAAATGTCAATGCAAATCTACAGTAACCGGAAAGATCTACAATTTTTGCTATAAATTGCCAGAAGTAAACTGAAATAGAATGTTCTAGAATTGAATTTTTTTTTTCTAGAATCCGAAAATCCTTGGCAAACGATTTAGCTGCGACTTTGTGGAGGAATGGGAGAAAATTGGTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAACCTAAAGTTGTGTGATT</pcr_primer_p1>
		<pcr_primer_p2>GTAGAACATGATTAGCATGAGGT</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>CGAACCTAAAGTTGTGTGATTCGTATTTTCCACATGGTTTCCGACATTTTGATACAAATATTGCCCTATTTTGGTCTTCTCCGAATTTCAGGCTCTTCTTCTTCTTCTCCGAATTTCCAATTTTCGAAATTTTCGGAACCTGGGTAATATGGGTATCAAAATGCCCCAAATTTCATGGAGATTCTTTTTTTGATCTTATTTTTCTTTTTTTCAGAATTTTCCAGAGTCTCCTCCAGATGCGACCTCATGCTAATCATGTTCTAC</canonical_amplicon>
		<polymorphic_amplicon>CGAACCTAAAGTTGTGTGATTCGTATTTTCCACATGGTTTCCGACATTTTGATACAAATATTGCCCTATTTTGGTCTTCTCCGAATTTCAGGCTCTTCTTCTTCTTCTCCGAATTTCCAATTTTCGAAATTTTCGGAACCTGGGTAATATGGGTATCAAAATGYCCCAAATTTCATGGAGATTCTTTTTTTGATCTTATTTTTCTTTTTTTCAGAATTTTCCAGAGTCTCCTCCAGATGCGACCTCATGCTAATCATGTTCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23706</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>29870</contig_pos>
        <strand>+</strand>
        <context>ATTTTCCAGA[A/G]TCTSCTCCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGAGATTCTTTTTTTGATCTTATTTTTCTTTTTTTCAGAATTTTCCAGA</left_flank>
        <right_flank>TCTCCTCCAGATGCGACCTCATGCTAATCATGTTCTACTTCTAATTGTCT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTATCAAAATGTCCCAAATTCTATGGAGATTATTCTTTTGATTCTATGTCTCCACACTAAGCGAATGACCAATTTCACGCCTTCTGATTTGAAATCTGGTGAAGAGATTTTTGGAAATTCGAAACATTTTTAAGTCTTGGAAACAAAATGTTTGTGTTGTCCACGAAATTTCTGATATTTTGATACCCATATTGCCATGATTCTAAAGTTTTGAAATTTTGACGTCTTCTGATGTTTCTGGAGAAGAGATTTTTTGGATTCTGGAGCATTTTCCGAACCTAAAGTTGTGTGATTCGTATTTTCCACATGGTTTCCGACATTTTGATACAAATATTGCCCTATTTTGGTCTTCTCCGAATTTCAGGCTCTTCTTCTTCTTCTCCGAATTTCCAATTTTCGAAATTTTCGGAACCTGGGTAATATGGGTATCAAAATGCCCCAAATTTCATGGAGATTCTTTTTTTGATCTTATTTTTCTTTTTTTCAGAATTTTCCAGAGTCTCCTCCAGATGCGACCTCATGCTAATCATGTTCTACTTCTAATTGTCTATGTATTTGGGACCCTTTTCCTTTTTGTTCAATTCCTAAAAAGTCCAATTTTCCGACGACACAATTTTGAGGAAAAAGACGACAATTTTTGGGTAAAAATGTGGTTTTTTGAACTCTTAACGTCTTCTGAAAAAATCAGAATCCTCAATTTTCAATGACGCCATCTGACGATTCTGAAGATTCCAACAATTCTTCGGAGCCAATTATTCCCGAAAAATGTCAATGCAAATCTACAGTAACCGGAAAGATCTACAATTTTTGCTATAAATTGCCAGAAGTAAACTGAAATAGAATGTTCTAGAATTGAATTTTTTTTTTCTAGAATCCGAAAATCCTTGGCAAACGATTTAGCTGCGACTTTGTGGAGGAATGGGAGAAAATTGGTGAGAAAAACTTTTTATTTTAGATTTCGTCAAATTTCATGTCGTCAAAAATGTTTGCCTTGTAATT</canonical>
            <polymorphic>GGTATCAAAATGTCCCAAATTCTATGGAGATTATTCTTTTGATTCTATGTCTCCACACTAAGCGAATGACCAATTTCACGCCTTCTGATTTGAAATCTGGTGAAGAGATTTTTGGAAATTCGAAACATTTTTAAGTCTTGGAAACAAAATGTTTGTGTTGTCCACGAAATTTCTGATATTTTGATACCCATATTGCCATGATTCTAAAGTTTTGAAATTTTGACGTCTTCTGATGTTTCTGGAGAAGAGATTTTTTGGATTCTGGAGCATTTTCCGAACCTAAAGTTGTGTGATTCGTATTTTCCACATGGTTTCCGACATTTTGATACAAATATTGCCCTATTTTGGTCTTCTCCGAATTTCAGGCTCTTCTTCTTCTTCTCCGAATTTCCAATTTTCGAAATTTTCGGAACCTGGGTAATATGGGTATCAAAATGCCCCAAATTTCATGGAGATTCTTTTTTTGATCTTATTTTTCTTTTTTTCAGAATTTTCCAGARTCTCCTCCAGATGCGACCTCATGCTAATCATGTTCTACTTCTAATTGTCTATGTATTTGGGACCCTTTTCCTTTTTGTTCAATTCCTAAAAAGTCCAATTTTCCGACGACACAATTTTGAGGAAAAAGACGACAATTTTTGGGTAAAAATGTGGTTTTTTGAACTCTTAACGTCTTCTGAAAAAATCAGAATCCTCAATTTTCAATGACGCCATCTGACGATTCTGAAGATTCCAACAATTCTTCGGAGCCAATTATTCCCGAAAAATGTCAATGCAAATCTACAGTAACCGGAAAGATCTACAATTTTTGCTATAAATTGCCAGAAGTAAACTGAAATAGAATGTTCTAGAATTGAATTTTTTTTTTCTAGAATCCGAAAATCCTTGGCAAACGATTTAGCTGCGACTTTGTGGAGGAATGGGAGAAAATTGGTGAGAAAAACTTTTTATTTTAGATTTCGTCAAATTTCATGTCGTCAAAAATGTTTGCCTTGTAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAACCTAAAGTTGTGTGATT</pcr_primer_p1>
		<pcr_primer_p2>TCCCAAATACATAGACAATTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>288</pcr_amplicon_size>
		<canonical_amplicon>CGAACCTAAAGTTGTGTGATTCGTATTTTCCACATGGTTTCCGACATTTTGATACAAATATTGCCCTATTTTGGTCTTCTCCGAATTTCAGGCTCTTCTTCTTCTTCTCCGAATTTCCAATTTTCGAAATTTTCGGAACCTGGGTAATATGGGTATCAAAATGCCCCAAATTTCATGGAGATTCTTTTTTTGATCTTATTTTTCTTTTTTTCAGAATTTTCCAGAGTCTCCTCCAGATGCGACCTCATGCTAATCATGTTCTACTTCTAATTGTCTATGTATTTGGGA</canonical_amplicon>
		<polymorphic_amplicon>CGAACCTAAAGTTGTGTGATTCGTATTTTCCACATGGTTTCCGACATTTTGATACAAATATTGCCCTATTTTGGTCTTCTCCGAATTTCAGGCTCTTCTTCTTCTTCTCCGAATTTCCAATTTTCGAAATTTTCGGAACCTGGGTAATATGGGTATCAAAATGCCCCAAATTTCATGGAGATTCTTTTTTTGATCTTATTTTTCTTTTTTTCAGAATTTTCCAGARTCTCCTCCAGATGCGACCTCATGCTAATCATGTTCTACTTCTAATTGTCTATGTATTTGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23707</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>29874</contig_pos>
        <strand>+</strand>
        <context>TCCAGARTCT[C/G]CTCCAGATGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GATTCTTTTTTTGATCTTATTTTTCTTTTTTTCAGAATTTTCCAGAGTCT</left_flank>
        <right_flank>CTCCAGATGCGACCTCATGCTAATCATGTTCTACTTCTAATTGTCTATGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAATGTCCCAAATTCTATGGAGATTATTCTTTTGATTCTATGTCTCCACACTAAGCGAATGACCAATTTCACGCCTTCTGATTTGAAATCTGGTGAAGAGATTTTTGGAAATTCGAAACATTTTTAAGTCTTGGAAACAAAATGTTTGTGTTGTCCACGAAATTTCTGATATTTTGATACCCATATTGCCATGATTCTAAAGTTTTGAAATTTTGACGTCTTCTGATGTTTCTGGAGAAGAGATTTTTTGGATTCTGGAGCATTTTCCGAACCTAAAGTTGTGTGATTCGTATTTTCCACATGGTTTCCGACATTTTGATACAAATATTGCCCTATTTTGGTCTTCTCCGAATTTCAGGCTCTTCTTCTTCTTCTCCGAATTTCCAATTTTCGAAATTTTCGGAACCTGGGTAATATGGGTATCAAAATGCCCCAAATTTCATGGAGATTCTTTTTTTGATCTTATTTTTCTTTTTTTCAGAATTTTCCAGAGTCTCCTCCAGATGCGACCTCATGCTAATCATGTTCTACTTCTAATTGTCTATGTATTTGGGACCCTTTTCCTTTTTGTTCAATTCCTAAAAAGTCCAATTTTCCGACGACACAATTTTGAGGAAAAAGACGACAATTTTTGGGTAAAAATGTGGTTTTTTGAACTCTTAACGTCTTCTGAAAAAATCAGAATCCTCAATTTTCAATGACGCCATCTGACGATTCTGAAGATTCCAACAATTCTTCGGAGCCAATTATTCCCGAAAAATGTCAATGCAAATCTACAGTAACCGGAAAGATCTACAATTTTTGCTATAAATTGCCAGAAGTAAACTGAAATAGAATGTTCTAGAATTGAATTTTTTTTTTCTAGAATCCGAAAATCCTTGGCAAACGATTTAGCTGCGACTTTGTGGAGGAATGGGAGAAAATTGGTGAGAAAAACTTTTTATTTTAGATTTCGTCAAATTTCATGTCGTCAAAAATGTTTGCCTTGTAATTGCCG</canonical>
            <polymorphic>TCAAAATGTCCCAAATTCTATGGAGATTATTCTTTTGATTCTATGTCTCCACACTAAGCGAATGACCAATTTCACGCCTTCTGATTTGAAATCTGGTGAAGAGATTTTTGGAAATTCGAAACATTTTTAAGTCTTGGAAACAAAATGTTTGTGTTGTCCACGAAATTTCTGATATTTTGATACCCATATTGCCATGATTCTAAAGTTTTGAAATTTTGACGTCTTCTGATGTTTCTGGAGAAGAGATTTTTTGGATTCTGGAGCATTTTCCGAACCTAAAGTTGTGTGATTCGTATTTTCCACATGGTTTCCGACATTTTGATACAAATATTGCCCTATTTTGGTCTTCTCCGAATTTCAGGCTCTTCTTCTTCTTCTCCGAATTTCCAATTTTCGAAATTTTCGGAACCTGGGTAATATGGGTATCAAAATGCCCCAAATTTCATGGAGATTCTTTTTTTGATCTTATTTTTCTTTTTTTCAGAATTTTCCAGAGTCTSCTCCAGATGCGACCTCATGCTAATCATGTTCTACTTCTAATTGTCTATGTATTTGGGACCCTTTTCCTTTTTGTTCAATTCCTAAAAAGTCCAATTTTCCGACGACACAATTTTGAGGAAAAAGACGACAATTTTTGGGTAAAAATGTGGTTTTTTGAACTCTTAACGTCTTCTGAAAAAATCAGAATCCTCAATTTTCAATGACGCCATCTGACGATTCTGAAGATTCCAACAATTCTTCGGAGCCAATTATTCCCGAAAAATGTCAATGCAAATCTACAGTAACCGGAAAGATCTACAATTTTTGCTATAAATTGCCAGAAGTAAACTGAAATAGAATGTTCTAGAATTGAATTTTTTTTTTCTAGAATCCGAAAATCCTTGGCAAACGATTTAGCTGCGACTTTGTGGAGGAATGGGAGAAAATTGGTGAGAAAAACTTTTTATTTTAGATTTCGTCAAATTTCATGTCGTCAAAAATGTTTGCCTTGTAATTGCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAACCTAAAGTTGTGTGATT</pcr_primer_p1>
		<pcr_primer_p2>TCCCAAATACATAGACAATTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>288</pcr_amplicon_size>
		<canonical_amplicon>CGAACCTAAAGTTGTGTGATTCGTATTTTCCACATGGTTTCCGACATTTTGATACAAATATTGCCCTATTTTGGTCTTCTCCGAATTTCAGGCTCTTCTTCTTCTTCTCCGAATTTCCAATTTTCGAAATTTTCGGAACCTGGGTAATATGGGTATCAAAATGCCCCAAATTTCATGGAGATTCTTTTTTTGATCTTATTTTTCTTTTTTTCAGAATTTTCCAGAGTCTCCTCCAGATGCGACCTCATGCTAATCATGTTCTACTTCTAATTGTCTATGTATTTGGGA</canonical_amplicon>
		<polymorphic_amplicon>CGAACCTAAAGTTGTGTGATTCGTATTTTCCACATGGTTTCCGACATTTTGATACAAATATTGCCCTATTTTGGTCTTCTCCGAATTTCAGGCTCTTCTTCTTCTTCTCCGAATTTCCAATTTTCGAAATTTTCGGAACCTGGGTAATATGGGTATCAAAATGCCCCAAATTTCATGGAGATTCTTTTTTTGATCTTATTTTTCTTTTTTTCAGAATTTTCCAGAGTCTSCTCCAGATGCGACCTCATGCTAATCATGTTCTACTTCTAATTGTCTATGTATTTGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23708</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>40957</contig_pos>
        <strand></strand>
        <context>GCGTTCTAAA[C/T]GCGTCTGAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTTCTAAGCGCTCAAAAATTCAACTTTCCGCGTTTATCAGCGTTCTAAA</left_flank>
        <right_flank>GCGTCTGAAGCTTTCAGAATCATTGAATTACCTTCACACTTGACGCCTTC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTGAAGCCTTTCTTCCTTTTGAACACGTTCAGCTACCGTAATCCTTCTCAATCTATAATCCATCTAGAAGCATCCTATAGCTACAGTAATCTCCTGTAGCTTGTCGTCGGGATTTGCGCTTTGTCCAAATACAGTTGTCGGACTACAGTAATCCCTTGGAGAGTACTGTAGGCGTCCATTTTGGCTCCGAAATCCTGTTTTTTCCTCCAAAACTTCTAGAATCGTCTCCAAAAATTTCAGAAATCAAAAATCCAGCTAATAAACCCCCTAGTTCCCTTATTTTTAGAACCAGAGACTCAAAAACTGGCTTCTAGAGCATCTTCTGGAGTTCCAGTTCAATTTTGACGCTTCTAAAAGCCTGCAAGAGCTCAAAAGTTCAATTTTTAGCACTTTTTAGCAGCCGTGTGATTCTAAACTATTCTAGAACGTCATCTGAACGCTTCTAAGAGCTTCTAAGCGCTCAAAAATTCAACTTTCCGCGTTTATCAGCGTTCTAAACGCGTCTGAAGCTTTCAGAATCATTGAATTACCTTCACACTTGACGCCTTCGTCGACGGTGCCATTCCACGAATCCAGATGGACGTTTTGCGTGATTCGTCGGCGAGTAGAAGGCCTCCAGCTGGCTTCGTTGGGGGCTTCGAGGCTGTCGTAGTTGTGGTAGCGGTTGGAGCCGCCCCTTCCTTCTTCTCGTCCTGCTTCTGGCCGCTCTCCTCCTCATTTTTCGTGTCTTCCGGAGCTGCTTCTGCGACTTCTGGAGCTCCTGTAGCTCCTGCTTCTCCACCAGCCGCTTCTGAAGCCTTGACGCNNNNNNNNNNNNTCCTCCTGGCACATCGAGTTCCGTAGTTTTGGTTGCTCATCACTCTCGTCTACAGTAATCTCATGCTCTGAACTCTGCACGTCTTCTGGCTCCTCCTCTTTTTTCACGTCTTCTGCAGCTGCTTCAACGGCGGCAGGGACGTCGTCTTTTTTCACTTCTTCTGGAGCTTTCACGGCTTCTGA</canonical>
            <polymorphic>ACTGAAGCCTTTCTTCCTTTTGAACACGTTCAGCTACCGTAATCCTTCTCAATCTATAATCCATCTAGAAGCATCCTATAGCTACAGTAATCTCCTGTAGCTTGTCGTCGGGATTTGCGCTTTGTCCAAATACAGTTGTCGGACTACAGTAATCCCTTGGAGAGTACTGTAGGCGTCCATTTTGGCTCCGAAATCCTGTTTTTTCCTCCAAAACTTCTAGAATCGTCTCCAAAAATTTCAGAAATCAAAAATCCAGCTAATAAACCCCCTAGTTCCCTTATTTTTAGAACCAGAGACTCAAAAACTGGCTTCTAGAGCATCTTCTGGAGTTCCAGTTCAATTTTGACGCTTCTAAAAGCCTGCAAGAGCTCAAAAGTTCAATTTTTAGCACTTTTTAGCAGCCGTGTGATTCTAAACTATTCTAGAACGTCATCTGAACGCTTCTAAGAGCTTCTAAGCGCTCAAAAATTCAACTTTCCGCGTTTATCAGCGTTCTAAAYGCGTCTGAAGCTTTCAGAATCATTGAATTACCTTCACACTTGACGCCTTCGTCGACGGTGCCATTCCACGAATCCAGATGGACGTTTTGCGTGATTCGTCGGCGAGTAGAAGGCCTCCAGCTGGCTTCGTTGGGGGCTTCGAGGCTGTCGTAGTTGTGGTAGCGGTTGGAGCCGCCCCTTCCTTCTTCTCGTCCTGCTTCTGGCCGCTCTCCTCCTCATTTTTCGTGTCTTCCGGAGCTGCTTCTGCGACTTCTGGAGCTCCTGTAGCTCCTGCTTCTCCACCAGCCGCTTCTGAAGCCTTGACGCNNNNNNNNNNNNTCCTCCTGGCACATCGAGTTCCGTAGTTTTGGTTGCTCATCACTCTCGTCTACAGTAATCTCATGCTCTGAACTCTGCACGTCTTCTGGCTCCTCCTCTTTTTTCACGTCTTCTGCAGCTGCTTCAACGGCGGCAGGGACGTCGTCTTTTTTCACTTCTTCTGGAGCTTTCACGGCTTCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 480 21</canonical_bands>
                <polymorphic_bands>520 480</polymorphic_bands>
            </assay>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 475 24</canonical_bands>
                <polymorphic_bands>976 24</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGCGT</site>
                <isoschizomers>
                    <enzyme>MluI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGTCATCTGAACGCTTCTA</pcr_primer_p1>
		<pcr_primer_p2>AAACTACGGAACTCGATGTG</pcr_primer_p2>
		<pcr_amplicon_size>421</pcr_amplicon_size>
		<canonical_amplicon>ACGTCATCTGAACGCTTCTAAGAGCTTCTAAGCGCTCAAAAATTCAACTTTCCGCGTTTATCAGCGTTCTAAACGCGTCTGAAGCTTTCAGAATCATTGAATTACCTTCACACTTGACGCCTTCGTCGACGGTGCCATTCCACGAATCCAGATGGACGTTTTGCGTGATTCGTCGGCGAGTAGAAGGCCTCCAGCTGGCTTCGTTGGGGGCTTCGAGGCTGTCGTAGTTGTGGTAGCGGTTGGAGCCGCCCCTTCCTTCTTCTCGTCCTGCTTCTGGCCGCTCTCCTCCTCATTTTTCGTGTCTTCCGGAGCTGCTTCTGCGACTTCTGGAGCTCCTGTAGCTCCTGCTTCTCCACCAGCCGCTTCTGAAGCCTTGACGCNNNNNNNNNNNNTCCTCCTGGCACATCGAGTTCCGTAGTTT</canonical_amplicon>
		<polymorphic_amplicon>ACGTCATCTGAACGCTTCTAAGAGCTTCTAAGCGCTCAAAAATTCAACTTTCCGCGTTTATCAGCGTTCTAAAYGCGTCTGAAGCTTTCAGAATCATTGAATTACCTTCACACTTGACGCCTTCGTCGACGGTGCCATTCCACGAATCCAGATGGACGTTTTGCGTGATTCGTCGGCGAGTAGAAGGCCTCCAGCTGGCTTCGTTGGGGGCTTCGAGGCTGTCGTAGTTGTGGTAGCGGTTGGAGCCGCCCCTTCCTTCTTCTCGTCCTGCTTCTGGCCGCTCTCCTCCTCATTTTTCGTGTCTTCCGGAGCTGCTTCTGCGACTTCTGGAGCTCCTGTAGCTCCTGCTTCTCCACCAGCCGCTTCTGAAGCCTTGACGCNNNNNNNNNNNNTCCTCCTGGCACATCGAGTTCCGTAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23709</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>41134</contig_pos>
        <strand></strand>
        <context>TGGAGCCGCC[C/T]CTTCCTTCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGTTGGGGGCTTCGAGGCTGTCGTAGTTGTGGTAGCGGTTGGAGCCGCC</left_flank>
        <right_flank>CTTCCTTCTTCTCGTCCTGCTTCTGGCCGCTCTCCTCCTCATTTTTCGTG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTTGGCTCCGAAATCCTGTTTTTTCCTCCAAAACTTCTAGAATCGTCTCCAAAAATTTCAGAAATCAAAAATCCAGCTAATAAACCCCCTAGTTCCCTTATTTTTAGAACCAGAGACTCAAAAACTGGCTTCTAGAGCATCTTCTGGAGTTCCAGTTCAATTTTGACGCTTCTAAAAGCCTGCAAGAGCTCAAAAGTTCAATTTTTAGCACTTTTTAGCAGCCGTGTGATTCTAAACTATTCTAGAACGTCATCTGAACGCTTCTAAGAGCTTCTAAGCGCTCAAAAATTCAACTTTCCGCGTTTATCAGCGTTCTAAACGCGTCTGAAGCTTTCAGAATCATTGAATTACCTTCACACTTGACGCCTTCGTCGACGGTGCCATTCCACGAATCCAGATGGACGTTTTGCGTGATTCGTCGGCGAGTAGAAGGCCTCCAGCTGGCTTCGTTGGGGGCTTCGAGGCTGTCGTAGTTGTGGTAGCGGTTGGAGCCGCCCCTTCCTTCTTCTCGTCCTGCTTCTGGCCGCTCTCCTCCTCATTTTTCGTGTCTTCCGGAGCTGCTTCTGCGACTTCTGGAGCTCCTGTAGCTCCTGCTTCTCCACCAGCCGCTTCTGAAGCCTTGACGCNNNNNNNNNNNNTCCTCCTGGCACATCGAGTTCCGTAGTTTTGGTTGCTCATCACTCTCGTCTACAGTAATCTCATGCTCTGAACTCTGCACGTCTTCTGGCTCCTCCTCTTTTTTCACGTCTTCTGCAGCTGCTTCAACGGCGGCAGGGACGTCGTCTTTTTTCACTTCTTCTGGAGCTTTCACGGCTTCTGAATCCTCCATTTTGTCCACGTCTTCTGGAGTATCCTTAGATTGCTCATCCTGCTCCTCCTCCTCAAACTCGTCCTCGCCTTCTGGCTCTTCTCCTGCTCCTCCGCTCGAATTCTTCTCTTCTGGCTCCTCGTCTTCTGGCTCATCGACAATTTCCAGACATTGCGAATCGTCCAATCC</canonical>
            <polymorphic>CATTTTGGCTCCGAAATCCTGTTTTTTCCTCCAAAACTTCTAGAATCGTCTCCAAAAATTTCAGAAATCAAAAATCCAGCTAATAAACCCCCTAGTTCCCTTATTTTTAGAACCAGAGACTCAAAAACTGGCTTCTAGAGCATCTTCTGGAGTTCCAGTTCAATTTTGACGCTTCTAAAAGCCTGCAAGAGCTCAAAAGTTCAATTTTTAGCACTTTTTAGCAGCCGTGTGATTCTAAACTATTCTAGAACGTCATCTGAACGCTTCTAAGAGCTTCTAAGCGCTCAAAAATTCAACTTTCCGCGTTTATCAGCGTTCTAAACGCGTCTGAAGCTTTCAGAATCATTGAATTACCTTCACACTTGACGCCTTCGTCGACGGTGCCATTCCACGAATCCAGATGGACGTTTTGCGTGATTCGTCGGCGAGTAGAAGGCCTCCAGCTGGCTTCGTTGGGGGCTTCGAGGCTGTCGTAGTTGTGGTAGCGGTTGGAGCCGCCYCTTCCTTCTTCTCGTCCTGCTTCTGGCCGCTCTCCTCCTCATTTTTCGTGTCTTCCGGAGCTGCTTCTGCGACTTCTGGAGCTCCTGTAGCTCCTGCTTCTCCACCAGCCGCTTCTGAAGCCTTGACGCNNNNNNNNNNNNTCCTCCTGGCACATCGAGTTCCGTAGTTTTGGTTGCTCATCACTCTCGTCTACAGTAATCTCATGCTCTGAACTCTGCACGTCTTCTGGCTCCTCCTCTTTTTTCACGTCTTCTGCAGCTGCTTCAACGGCGGCAGGGACGTCGTCTTTTTTCACTTCTTCTGGAGCTTTCACGGCTTCTGAATCCTCCATTTTGTCCACGTCTTCTGGAGTATCCTTAGATTGCTCATCCTGCTCCTCCTCCTCAAACTCGTCCTCGCCTTCTGGCTCTTCTCCTGCTCCTCCGCTCGAATTCTTCTCTTCTGGCTCCTCGTCTTCTGGCTCATCGACAATTTCCAGACATTGCGAATCGTCCAATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGAATTACCTTCACACTTGAC</pcr_primer_p1>
		<pcr_primer_p2>AAACTACGGAACTCGATGTG</pcr_primer_p2>
		<pcr_amplicon_size>326</pcr_amplicon_size>
		<canonical_amplicon>ATTGAATTACCTTCACACTTGACGCCTTCGTCGACGGTGCCATTCCACGAATCCAGATGGACGTTTTGCGTGATTCGTCGGCGAGTAGAAGGCCTCCAGCTGGCTTCGTTGGGGGCTTCGAGGCTGTCGTAGTTGTGGTAGCGGTTGGAGCCGCCCCTTCCTTCTTCTCGTCCTGCTTCTGGCCGCTCTCCTCCTCATTTTTCGTGTCTTCCGGAGCTGCTTCTGCGACTTCTGGAGCTCCTGTAGCTCCTGCTTCTCCACCAGCCGCTTCTGAAGCCTTGACGCNNNNNNNNNNNNTCCTCCTGGCACATCGAGTTCCGTAGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTGAATTACCTTCACACTTGACGCCTTCGTCGACGGTGCCATTCCACGAATCCAGATGGACGTTTTGCGTGATTCGTCGGCGAGTAGAAGGCCTCCAGCTGGCTTCGTTGGGGGCTTCGAGGCTGTCGTAGTTGTGGTAGCGGTTGGAGCCGCCYCTTCCTTCTTCTCGTCCTGCTTCTGGCCGCTCTCCTCCTCATTTTTCGTGTCTTCCGGAGCTGCTTCTGCGACTTCTGGAGCTCCTGTAGCTCCTGCTTCTCCACCAGCCGCTTCTGAAGCCTTGACGCNNNNNNNNNNNNTCCTCCTGGCACATCGAGTTCCGTAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23710</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>41148</contig_pos>
        <strand></strand>
        <context>CCTTCTTCTC[G/A]TCCTGCTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAGGCTGTCGTAGTTGTGGTAGCGGTTGGAGCCGCCCCTTCCTTCTTCTC</left_flank>
        <right_flank>TCCTGCTTCTGGCCGCTCTCCTCCTCATTTTTCGTGTCTTCCGGAGCTGC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCCTGTTTTTTCCTCCAAAACTTCTAGAATCGTCTCCAAAAATTTCAGAAATCAAAAATCCAGCTAATAAACCCCCTAGTTCCCTTATTTTTAGAACCAGAGACTCAAAAACTGGCTTCTAGAGCATCTTCTGGAGTTCCAGTTCAATTTTGACGCTTCTAAAAGCCTGCAAGAGCTCAAAAGTTCAATTTTTAGCACTTTTTAGCAGCCGTGTGATTCTAAACTATTCTAGAACGTCATCTGAACGCTTCTAAGAGCTTCTAAGCGCTCAAAAATTCAACTTTCCGCGTTTATCAGCGTTCTAAACGCGTCTGAAGCTTTCAGAATCATTGAATTACCTTCACACTTGACGCCTTCGTCGACGGTGCCATTCCACGAATCCAGATGGACGTTTTGCGTGATTCGTCGGCGAGTAGAAGGCCTCCAGCTGGCTTCGTTGGGGGCTTCGAGGCTGTCGTAGTTGTGGTAGCGGTTGGAGCCGCCCCTTCCTTCTTCTCGTCCTGCTTCTGGCCGCTCTCCTCCTCATTTTTCGTGTCTTCCGGAGCTGCTTCTGCGACTTCTGGAGCTCCTGTAGCTCCTGCTTCTCCACCAGCCGCTTCTGAAGCCTTGACGCNNNNNNNNNNNNTCCTCCTGGCACATCGAGTTCCGTAGTTTTGGTTGCTCATCACTCTCGTCTACAGTAATCTCATGCTCTGAACTCTGCACGTCTTCTGGCTCCTCCTCTTTTTTCACGTCTTCTGCAGCTGCTTCAACGGCGGCAGGGACGTCGTCTTTTTTCACTTCTTCTGGAGCTTTCACGGCTTCTGAATCCTCCATTTTGTCCACGTCTTCTGGAGTATCCTTAGATTGCTCATCCTGCTCCTCCTCCTCAAACTCGTCCTCGCCTTCTGGCTCTTCTCCTGCTCCTCCGCTCGAATTCTTCTCTTCTGGCTCCTCGTCTTCTGGCTCATCGACAATTTCCAGACATTGCGAATCGTCCAATCCTTCGTTTTCGACTA</canonical>
            <polymorphic>AATCCTGTTTTTTCCTCCAAAACTTCTAGAATCGTCTCCAAAAATTTCAGAAATCAAAAATCCAGCTAATAAACCCCCTAGTTCCCTTATTTTTAGAACCAGAGACTCAAAAACTGGCTTCTAGAGCATCTTCTGGAGTTCCAGTTCAATTTTGACGCTTCTAAAAGCCTGCAAGAGCTCAAAAGTTCAATTTTTAGCACTTTTTAGCAGCCGTGTGATTCTAAACTATTCTAGAACGTCATCTGAACGCTTCTAAGAGCTTCTAAGCGCTCAAAAATTCAACTTTCCGCGTTTATCAGCGTTCTAAACGCGTCTGAAGCTTTCAGAATCATTGAATTACCTTCACACTTGACGCCTTCGTCGACGGTGCCATTCCACGAATCCAGATGGACGTTTTGCGTGATTCGTCGGCGAGTAGAAGGCCTCCAGCTGGCTTCGTTGGGGGCTTCGAGGCTGTCGTAGTTGTGGTAGCGGTTGGAGCCGCCCCTTCCTTCTTCTCRTCCTGCTTCTGGCCGCTCTCCTCCTCATTTTTCGTGTCTTCCGGAGCTGCTTCTGCGACTTCTGGAGCTCCTGTAGCTCCTGCTTCTCCACCAGCCGCTTCTGAAGCCTTGACGCNNNNNNNNNNNNTCCTCCTGGCACATCGAGTTCCGTAGTTTTGGTTGCTCATCACTCTCGTCTACAGTAATCTCATGCTCTGAACTCTGCACGTCTTCTGGCTCCTCCTCTTTTTTCACGTCTTCTGCAGCTGCTTCAACGGCGGCAGGGACGTCGTCTTTTTTCACTTCTTCTGGAGCTTTCACGGCTTCTGAATCCTCCATTTTGTCCACGTCTTCTGGAGTATCCTTAGATTGCTCATCCTGCTCCTCCTCCTCAAACTCGTCCTCGCCTTCTGGCTCTTCTCCTGCTCCTCCGCTCGAATTCTTCTCTTCTGGCTCCTCGTCTTCTGGCTCATCGACAATTTCCAGACATTGCGAATCGTCCAATCCTTCGTTTTCGACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGCTGTCGTAGTTGTGGTA</pcr_primer_p1>
		<pcr_primer_p2>AGTTCAGAGCATGAGATTACTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGGCTGTCGTAGTTGTGGTAGCGGTTGGAGCCGCCCCTTCCTTCTTCTCGTCCTGCTTCTGGCCGCTCTCCTCCTCATTTTTCGTGTCTTCCGGAGCTGCTTCTGCGACTTCTGGAGCTCCTGTAGCTCCTGCTTCTCCACCAGCCGCTTCTGAAGCCTTGACGCNNNNNNNNNNNNTCCTCCTGGCACATCGAGTTCCGTAGTTTTGGTTGCTCATCACTCTCGTCTACAGTAATCTCATGCTCTGAACT</canonical_amplicon>
		<polymorphic_amplicon>AGGCTGTCGTAGTTGTGGTAGCGGTTGGAGCCGCCCCTTCCTTCTTCTCRTCCTGCTTCTGGCCGCTCTCCTCCTCATTTTTCGTGTCTTCCGGAGCTGCTTCTGCGACTTCTGGAGCTCCTGTAGCTCCTGCTTCTCCACCAGCCGCTTCTGAAGCCTTGACGCNNNNNNNNNNNNTCCTCCTGGCACATCGAGTTCCGTAGTTTTGGTTGCTCATCACTCTCGTCTACAGTAATCTCATGCTCTGAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23711</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>41177</contig_pos>
        <strand></strand>
        <context>TCCTCCTCAT[T/G]TTTCGTGTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AGCCGCCCCTTCCTTCTTCTCGTCCTGCTTCTGGCCGCTCTCCTCCTCAT</left_flank>
        <right_flank>TTTCGTGTCTTCCGGAGCTGCTTCTGCGACTTCTGGAGCTCCTGTAGCTC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCGTCTCCAAAAATTTCAGAAATCAAAAATCCAGCTAATAAACCCCCTAGTTCCCTTATTTTTAGAACCAGAGACTCAAAAACTGGCTTCTAGAGCATCTTCTGGAGTTCCAGTTCAATTTTGACGCTTCTAAAAGCCTGCAAGAGCTCAAAAGTTCAATTTTTAGCACTTTTTAGCAGCCGTGTGATTCTAAACTATTCTAGAACGTCATCTGAACGCTTCTAAGAGCTTCTAAGCGCTCAAAAATTCAACTTTCCGCGTTTATCAGCGTTCTAAACGCGTCTGAAGCTTTCAGAATCATTGAATTACCTTCACACTTGACGCCTTCGTCGACGGTGCCATTCCACGAATCCAGATGGACGTTTTGCGTGATTCGTCGGCGAGTAGAAGGCCTCCAGCTGGCTTCGTTGGGGGCTTCGAGGCTGTCGTAGTTGTGGTAGCGGTTGGAGCCGCCCCTTCCTTCTTCTCGTCCTGCTTCTGGCCGCTCTCCTCCTCATTTTTCGTGTCTTCCGGAGCTGCTTCTGCGACTTCTGGAGCTCCTGTAGCTCCTGCTTCTCCACCAGCCGCTTCTGAAGCCTTGACGCNNNNNNNNNNNNTCCTCCTGGCACATCGAGTTCCGTAGTTTTGGTTGCTCATCACTCTCGTCTACAGTAATCTCATGCTCTGAACTCTGCACGTCTTCTGGCTCCTCCTCTTTTTTCACGTCTTCTGCAGCTGCTTCAACGGCGGCAGGGACGTCGTCTTTTTTCACTTCTTCTGGAGCTTTCACGGCTTCTGAATCCTCCATTTTGTCCACGTCTTCTGGAGTATCCTTAGATTGCTCATCCTGCTCCTCCTCCTCAAACTCGTCCTCGCCTTCTGGCTCTTCTCCTGCTCCTCCGCTCGAATTCTTCTCTTCTGGCTCCTCGTCTTCTGGCTCATCGACAATTTCCAGACATTGCGAATCGTCCAATCCTTCGTTTTCGACTAAATTCTCCTTACAGTAATCCATTGCTCAG</canonical>
            <polymorphic>AATCGTCTCCAAAAATTTCAGAAATCAAAAATCCAGCTAATAAACCCCCTAGTTCCCTTATTTTTAGAACCAGAGACTCAAAAACTGGCTTCTAGAGCATCTTCTGGAGTTCCAGTTCAATTTTGACGCTTCTAAAAGCCTGCAAGAGCTCAAAAGTTCAATTTTTAGCACTTTTTAGCAGCCGTGTGATTCTAAACTATTCTAGAACGTCATCTGAACGCTTCTAAGAGCTTCTAAGCGCTCAAAAATTCAACTTTCCGCGTTTATCAGCGTTCTAAACGCGTCTGAAGCTTTCAGAATCATTGAATTACCTTCACACTTGACGCCTTCGTCGACGGTGCCATTCCACGAATCCAGATGGACGTTTTGCGTGATTCGTCGGCGAGTAGAAGGCCTCCAGCTGGCTTCGTTGGGGGCTTCGAGGCTGTCGTAGTTGTGGTAGCGGTTGGAGCCGCCCCTTCCTTCTTCTCGTCCTGCTTCTGGCCGCTCTCCTCCTCATKTTTCGTGTCTTCCGGAGCTGCTTCTGCGACTTCTGGAGCTCCTGTAGCTCCTGCTTCTCCACCAGCCGCTTCTGAAGCCTTGACGCNNNNNNNNNNNNTCCTCCTGGCACATCGAGTTCCGTAGTTTTGGTTGCTCATCACTCTCGTCTACAGTAATCTCATGCTCTGAACTCTGCACGTCTTCTGGCTCCTCCTCTTTTTTCACGTCTTCTGCAGCTGCTTCAACGGCGGCAGGGACGTCGTCTTTTTTCACTTCTTCTGGAGCTTTCACGGCTTCTGAATCCTCCATTTTGTCCACGTCTTCTGGAGTATCCTTAGATTGCTCATCCTGCTCCTCCTCCTCAAACTCGTCCTCGCCTTCTGGCTCTTCTCCTGCTCCTCCGCTCGAATTCTTCTCTTCTGGCTCCTCGTCTTCTGGCTCATCGACAATTTCCAGACATTGCGAATCGTCCAATCCTTCGTTTTCGACTAAATTCTCCTTACAGTAATCCATTGCTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGCTGTCGTAGTTGTGGTA</pcr_primer_p1>
		<pcr_primer_p2>AGTTCAGAGCATGAGATTACTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGGCTGTCGTAGTTGTGGTAGCGGTTGGAGCCGCCCCTTCCTTCTTCTCGTCCTGCTTCTGGCCGCTCTCCTCCTCATTTTTCGTGTCTTCCGGAGCTGCTTCTGCGACTTCTGGAGCTCCTGTAGCTCCTGCTTCTCCACCAGCCGCTTCTGAAGCCTTGACGCNNNNNNNNNNNNTCCTCCTGGCACATCGAGTTCCGTAGTTTTGGTTGCTCATCACTCTCGTCTACAGTAATCTCATGCTCTGAACT</canonical_amplicon>
		<polymorphic_amplicon>AGGCTGTCGTAGTTGTGGTAGCGGTTGGAGCCGCCCCTTCCTTCTTCTCGTCCTGCTTCTGGCCGCTCTCCTCCTCATKTTTCGTGTCTTCCGGAGCTGCTTCTGCGACTTCTGGAGCTCCTGTAGCTCCTGCTTCTCCACCAGCCGCTTCTGAAGCCTTGACGCNNNNNNNNNNNNTCCTCCTGGCACATCGAGTTCCGTAGTTTTGGTTGCTCATCACTCTCGTCTACAGTAATCTCATGCTCTGAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23712</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>50433</contig_pos>
        <strand>+</strand>
        <context>AAAAAGGCTK[G/T]AATCCATGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTCGAAATCCACGACCTAGAAAACGTGGAAAGTGCGAAAAAAAGGCTG</left_flank>
        <right_flank>AATCCATGGAAATCGAGGGATAAAATGAGTTGGAAAATGAATTGGCTCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGCATTTTTAGCATAAAAATCAGATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGCTCTCGCCACCAACCGACATCTCGCCGCCGCCCAGCTAGATTTTTTCGCTGTTTTTTTCCGGATTTTTCGCTTTATTCTTAGATTTTAAATCAATAAATTCGAATTCCTCACCTTACTGAGTCTTACAATGAGCACAACCTTGACACCTTCCGTGCTCAGACCAAGTTTTTTCAGCTCGCTCTGAAAAAATGATCTTTTAGGCACGACAAATTCGATTTTTAGCCCGAAATCCTCACTTTTAACGCTGGCACAGTCAAATTCTCAACTTGTGTCCCGTTCAGCAGTGGCATATAAGAGATTGAAGAACCGCTGAAAAAAAATTATCTGAATTTTCCAGGTTTTTGATGGGTTCCAGGTGACGGACGGCGGTCTTCAAACACAAAAAATTCGAAATCCACGACCTAGAAAACGTGGAAAGTGCGAAAAAAAGGCTGGAATCCATGGAAATCGAGGGATAAAATGAGTTGGAAAATGAATTGGCTCCGTATCCGGAAACGCGTCAAGAAGGAGGGCTGGCGCGATTCTTGTGCAGGTCTTGGTCCGTGTCCAGTTTCCGGCGGTAATTTGAATTTGGGTTTTTCAAAAGGGGTGAAATTGTTGACTTTTCTTCTTAAAATATTGATGGTTCTTCTCGATTTTTCTGGTTTTTCTAGACCTTTATCTGTTTTTAATCCACAAATTGGCGAAAAATCTGAAATTTAAGGATTTTTTTTGAATTTGATAGATAATTTTCGACTTTTTCCAGTTTTTTTTCATTATTTTCATCACTTTTTTCGATTTCAATCACACCTGAAAACCCTGAAAATCAAATATTCCGGGCAAAAAATCTTGGAAAACTTCAATTTTAGAGATTTCGTCGATTTTTCCCAATTTTTCTGCAATTTCATCATATTTTCGACTATTCCCATCCTTTTCAGACAATTTTCATTTGTTTT</canonical>
            <polymorphic>TCGCATTTTTAGCATAAAAATCAGATTTTGAAAGCTCTAAAATCACTATTTTCCATATTTTCAGCTCTCGCCACCAACCGACATCTCGCCGCCGCCCAGCTAGATTTTTTCGCTGTTTTTTTCCGGATTTTTCGCTTTATTCTTAGATTTTAAATCAATAAATTCGAATTCCTCACCTTACTGAGTCTTACAATGAGCACAACCTTGACACCTTCCGTGCTCAGACCAAGTTTTTTCAGCTCGCTCTGAAAAAATGATCTTTTAGGCACGACAAATTCGATTTTTAGCCCGAAATCCTCACTTTTAACGCTGGCACAGTCAAATTCTCAACTTGTGTCCCGTTCAGCAGTGGCATATAAGAGATTGAAGAACCGCTGAAAAAAAATTATCTGAATTTTCCAGGTTTTTGATGGGTTCCAGGTGACGGACGGCGGTCTTCAAACACAAAAAATTCGAAATCCACGACCTAGAAAACGTGGAAAGTGCGAAAAAAAGGCTGKAATCCATGGAAATCGAGGGATAAAATGAGTTGGAAAATGAATTGGCTCCGTATCCGGAAACGCGTCAAGAAGGAGGGCTGGCGCGATTCTTGTGCAGGTCTTGGTCCGTGTCCAGTTTCCGGCGGTAATTTGAATTTGGGTTTTTCAAAAGGGGTGAAATTGTTGACTTTTCTTCTTAAAATATTGATGGTTCTTCTCGATTTTTCTGGTTTTTCTAGACCTTTATCTGTTTTTAATCCACAAATTGGCGAAAAATCTGAAATTTAAGGATTTTTTTTGAATTTGATAGATAATTTTCGACTTTTTCCAGTTTTTTTTCATTATTTTCATCACTTTTTTCGATTTCAATCACACCTGAAAACCCTGAAAATCAAATATTCCGGGCAAAAAATCTTGGAAAACTTCAATTTTAGAGATTTCGTCGATTTTTCCCAATTTTTCTGCAATTTCATCATATTTTCGACTATTCCCATCCTTTTCAGACAATTTTCATTTGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>415 317 183 85</canonical_bands>
                <polymorphic_bands>415 402 183</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 415 85</canonical_bands>
                <polymorphic_bands>585 415</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTTTCCAGGTTTTTGATG</pcr_primer_p1>
		<pcr_primer_p2>AAAACCCAAATTCAAATTACC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GAATTTTCCAGGTTTTTGATGGGTTCCAGGTGACGGACGGCGGTCTTCAAACACAAAAAATTCGAAATCCACGACCTAGAAAACGTGGAAAGTGCGAAAAAAAGGCTGGAATCCATGGAAATCGAGGGATAAAATGAGTTGGAAAATGAATTGGCTCCGTATCCGGAAACGCGTCAAGAAGGAGGGCTGGCGCGATTCTTGTGCAGGTCTTGGTCCGTGTCCAGTTTCCGGCGGTAATTTGAATTTGGGTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAATTTTCCAGGTTTTTGATGGGTTCCAGGTGACGGACGGCGGTCTTCAAACACAAAAAATTCGAAATCCACGACCTAGAAAACGTGGAAAGTGCGAAAAAAAGGCTGKAATCCATGGAAATCGAGGGATAAAATGAGTTGGAAAATGAATTGGCTCCGTATCCGGAAACGCGTCAAGAAGGAGGGCTGGCGCGATTCTTGTGCAGGTCTTGGTCCGTGTCCAGTTTCCGGCGGTAATTTGAATTTGGGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23713</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>50471</contig_pos>
        <strand>+</strand>
        <context>AGTTGGAAAA[A/T]GAATTGGCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAAAAGGCTGGAATCCATGGAAATCGAGGGATAAAATGAGTTGGAAAA</left_flank>
        <right_flank>GAATTGGCTCCGTATCCGGAAACGCGTCAAGAAGGAGGGCTGGCGCGATT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATCACTATTTTCCATATTTTCAGCTCTCGCCACCAACCGACATCTCGCCGCCGCCCAGCTAGATTTTTTCGCTGTTTTTTTCCGGATTTTTCGCTTTATTCTTAGATTTTAAATCAATAAATTCGAATTCCTCACCTTACTGAGTCTTACAATGAGCACAACCTTGACACCTTCCGTGCTCAGACCAAGTTTTTTCAGCTCGCTCTGAAAAAATGATCTTTTAGGCACGACAAATTCGATTTTTAGCCCGAAATCCTCACTTTTAACGCTGGCACAGTCAAATTCTCAACTTGTGTCCCGTTCAGCAGTGGCATATAAGAGATTGAAGAACCGCTGAAAAAAAATTATCTGAATTTTCCAGGTTTTTGATGGGTTCCAGGTGACGGACGGCGGTCTTCAAACACAAAAAATTCGAAATCCACGACCTAGAAAACGTGGAAAGTGCGAAAAAAAGGCTGGAATCCATGGAAATCGAGGGATAAAATGAGTTGGAAAATGAATTGGCTCCGTATCCGGAAACGCGTCAAGAAGGAGGGCTGGCGCGATTCTTGTGCAGGTCTTGGTCCGTGTCCAGTTTCCGGCGGTAATTTGAATTTGGGTTTTTCAAAAGGGGTGAAATTGTTGACTTTTCTTCTTAAAATATTGATGGTTCTTCTCGATTTTTCTGGTTTTTCTAGACCTTTATCTGTTTTTAATCCACAAATTGGCGAAAAATCTGAAATTTAAGGATTTTTTTTGAATTTGATAGATAATTTTCGACTTTTTCCAGTTTTTTTTCATTATTTTCATCACTTTTTTCGATTTCAATCACACCTGAAAACCCTGAAAATCAAATATTCCGGGCAAAAAATCTTGGAAAACTTCAATTTTAGAGATTTCGTCGATTTTTCCCAATTTTTCTGCAATTTCATCATATTTTCGACTATTCCCATCCTTTTCAGACAATTTTCATTTGTTTTTTATATTTTTTCACCCCTGAAAACCCTAAAAGTCAACT</canonical>
            <polymorphic>AAAATCACTATTTTCCATATTTTCAGCTCTCGCCACCAACCGACATCTCGCCGCCGCCCAGCTAGATTTTTTCGCTGTTTTTTTCCGGATTTTTCGCTTTATTCTTAGATTTTAAATCAATAAATTCGAATTCCTCACCTTACTGAGTCTTACAATGAGCACAACCTTGACACCTTCCGTGCTCAGACCAAGTTTTTTCAGCTCGCTCTGAAAAAATGATCTTTTAGGCACGACAAATTCGATTTTTAGCCCGAAATCCTCACTTTTAACGCTGGCACAGTCAAATTCTCAACTTGTGTCCCGTTCAGCAGTGGCATATAAGAGATTGAAGAACCGCTGAAAAAAAATTATCTGAATTTTCCAGGTTTTTGATGGGTTCCAGGTGACGGACGGCGGTCTTCAAACACAAAAAATTCGAAATCCACGACCTAGAAAACGTGGAAAGTGCGAAAAAAAGGCTGGAATCCATGGAAATCGAGGGATAAAATGAGTTGGAAAAWGAATTGGCTCCGTATCCGGAAACGCGTCAAGAAGGAGGGCTGGCGCGATTCTTGTGCAGGTCTTGGTCCGTGTCCAGTTTCCGGCGGTAATTTGAATTTGGGTTTTTCAAAAGGGGTGAAATTGTTGACTTTTCTTCTTAAAATATTGATGGTTCTTCTCGATTTTTCTGGTTTTTCTAGACCTTTATCTGTTTTTAATCCACAAATTGGCGAAAAATCTGAAATTTAAGGATTTTTTTTGAATTTGATAGATAATTTTCGACTTTTTCCAGTTTTTTTTCATTATTTTCATCACTTTTTTCGATTTCAATCACACCTGAAAACCCTGAAAATCAAATATTCCGGGCAAAAAATCTTGGAAAACTTCAATTTTAGAGATTTCGTCGATTTTTCCCAATTTTTCTGCAATTTCATCATATTTTCGACTATTCCCATCCTTTTCAGACAATTTTCATTTGTTTTTTATATTTTTTCACCCCTGAAAACCCTAAAAGTCAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATCCACGACCTAGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CGAGAAGAACCATCAATATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAAATCCACGACCTAGAAAACGTGGAAAGTGCGAAAAAAAGGCTGGAATCCATGGAAATCGAGGGATAAAATGAGTTGGAAAATGAATTGGCTCCGTATCCGGAAACGCGTCAAGAAGGAGGGCTGGCGCGATTCTTGTGCAGGTCTTGGTCCGTGTCCAGTTTCCGGCGGTAATTTGAATTTGGGTTTTTCAAAAGGGGTGAAATTGTTGACTTTTCTTCTTAAAATATTGATGGTTCTTCTCG</canonical_amplicon>
		<polymorphic_amplicon>GAAATCCACGACCTAGAAAACGTGGAAAGTGCGAAAAAAAGGCTGGAATCCATGGAAATCGAGGGATAAAATGAGTTGGAAAAWGAATTGGCTCCGTATCCGGAAACGCGTCAAGAAGGAGGGCTGGCGCGATTCTTGTGCAGGTCTTGGTCCGTGTCCAGTTTCCGGCGGTAATTTGAATTTGGGTTTTTCAAAAGGGGTGAAATTGTTGACTTTTCTTCTTAAAATATTGATGGTTCTTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23714</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>51884</contig_pos>
        <strand>+</strand>
        <context>CATCGATTCT[A/G]AGTCTAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGAATTTGGTCTAATTTTGCTTTTGAAATCGCAATTCTACATCGATTCT</left_flank>
        <right_flank>AGTCTAAAAAACCTGAAAAATCTATTTTATTCACCTAGAAAACCGATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACAATTATTTTTCCGAATTTTCAGCAATTTTTCAATCTAAAAATCGATTTTCCAACGCATTTTCAGACTAAAAAATGGCAAAAATTCCTCAAAAAATCCAAAAAAAAAAACAATATTTGATCTACCCGGGAAATTTCAAATTTCCTCCAAATTGTTCAATTTTTCAGTGATCATCAAATCAAATCGATTTCTCCTGATCCATAAAAATGTCGAAACAATTCGATTGCTCATTATTGTCAAATTGTCATTCATTTTATATGGATCGTCTTGGAAATATGCAGAATATTCATCAGAATCTGAATTCCACGTCATCTGCATCCTATTCATCTTCTTCTCGGAAACAAATTCTGCCGCTGAAACCGCCGAAAAATCAATATTCACTGCAGCAGTTCCACGATGTCAAGGTTAGTGCATTTTGGGTTGAAAAATCGATTTTTAGCCCAGAAATCGGAATTTGGTCTAATTTTGCTTTTGAAATCGCAATTCTACATCGATTCTAAGTCTAAAAAACCTGAAAAATCTATTTTATTCACCTAGAAAACCGATTTTTCGAAAAATCTGTGCGAAAAATCGATTTTCCAGAGCCAAAAATGGGATTTTCAGCTCAAAATTATTGATTTTTCATGCTAAAATCGCTTTGAAACACTAACTTTGGCTTCAAATTCGGATTTTTCAAAGACAATATACCTAAATTTGATTTTCACCGAGTTTAGCCTATTTTAACCCGAAATTGTTCATTTTTCTGTGGTTAAAATCGATTTTTAGTGATTTTTAGACTGAAAATCAATATTTCCAGTGAAATCTCGGTCAAAAATCGAAGTTTTTCAGCTTTTTTAGCCCTAAAGTCTGAAAAATGAGGGAGAATTCCCCCGCAAATCGACACAAAGCTTAAAGGCGCATGCTCTTGTGAGGTGTTTGGGTCTCGCCGTGAAAACTGAAATAGGCGGGAAATTTGAATTTTAAGGCTGTGTTTTCGAATTTTCATGATTTTTCGGCAAT</canonical>
            <polymorphic>CACAATTATTTTTCCGAATTTTCAGCAATTTTTCAATCTAAAAATCGATTTTCCAACGCATTTTCAGACTAAAAAATGGCAAAAATTCCTCAAAAAATCCAAAAAAAAAAACAATATTTGATCTACCCGGGAAATTTCAAATTTCCTCCAAATTGTTCAATTTTTCAGTGATCATCAAATCAAATCGATTTCTCCTGATCCATAAAAATGTCGAAACAATTCGATTGCTCATTATTGTCAAATTGTCATTCATTTTATATGGATCGTCTTGGAAATATGCAGAATATTCATCAGAATCTGAATTCCACGTCATCTGCATCCTATTCATCTTCTTCTCGGAAACAAATTCTGCCGCTGAAACCGCCGAAAAATCAATATTCACTGCAGCAGTTCCACGATGTCAAGGTTAGTGCATTTTGGGTTGAAAAATCGATTTTTAGCCCAGAAATCGGAATTTGGTCTAATTTTGCTTTTGAAATCGCAATTCTACATCGATTCTRAGTCTAAAAAACCTGAAAAATCTATTTTATTCACCTAGAAAACCGATTTTTCGAAAAATCTGTGCGAAAAATCGATTTTCCAGAGCCAAAAATGGGATTTTCAGCTCAAAATTATTGATTTTTCATGCTAAAATCGCTTTGAAACACTAACTTTGGCTTCAAATTCGGATTTTTCAAAGACAATATACCTAAATTTGATTTTCACCGAGTTTAGCCTATTTTAACCCGAAATTGTTCATTTTTCTGTGGTTAAAATCGATTTTTAGTGATTTTTAGACTGAAAATCAATATTTCCAGTGAAATCTCGGTCAAAAATCGAAGTTTTTCAGCTTTTTTAGCCCTAAAGTCTGAAAAATGAGGGAGAATTCCCCCGCAAATCGACACAAAGCTTAAAGGCGCATGCTCTTGTGAGGTGTTTGGGTCTCGCCGTGAAAACTGAAATAGGCGGGAAATTTGAATTTTAAGGCTGTGTTTTCGAATTTTCATGATTTTTCGGCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTGCATCCTATTCATCTTCTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAAATCGGTTTTCTAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATCTGCATCCTATTCATCTTCTTCTCGGAAACAAATTCTGCCGCTGAAACCGCCGAAAAATCAATATTCACTGCAGCAGTTCCACGATGTCAAGGTTAGTGCATTTTGGGTTGAAAAATCGATTTTTAGCCCAGAAATCGGAATTTGGTCTAATTTTGCTTTTGAAATCGCAATTCTACATCGATTCTAAGTCTAAAAAACCTGAAAAATCTATTTTATTCACCTAGAAAACCGATTTTTC</canonical_amplicon>
		<polymorphic_amplicon>ATCTGCATCCTATTCATCTTCTTCTCGGAAACAAATTCTGCCGCTGAAACCGCCGAAAAATCAATATTCACTGCAGCAGTTCCACGATGTCAAGGTTAGTGCATTTTGGGTTGAAAAATCGATTTTTAGCCCAGAAATCGGAATTTGGTCTAATTTTGCTTTTGAAATCGCAATTCTACATCGATTCTRAGTCTAAAAAACCTGAAAAATCTATTTTATTCACCTAGAAAACCGATTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23715</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>52009</contig_pos>
        <strand>+</strand>
        <context>TTGATTTTTC[A/T]TGCTAAAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTCCAGAGCCAAAAATGGGATTTTCAGCTCAAAATTATTGATTTTTC</left_flank>
        <right_flank>TGCTAAAATCGCTTTGAAACACTAACTTTGGCTTCAAATTCGGATTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCGGGAAATTTCAAATTTCCTCCAAATTGTTCAATTTTTCAGTGATCATCAAATCAAATCGATTTCTCCTGATCCATAAAAATGTCGAAACAATTCGATTGCTCATTATTGTCAAATTGTCATTCATTTTATATGGATCGTCTTGGAAATATGCAGAATATTCATCAGAATCTGAATTCCACGTCATCTGCATCCTATTCATCTTCTTCTCGGAAACAAATTCTGCCGCTGAAACCGCCGAAAAATCAATATTCACTGCAGCAGTTCCACGATGTCAAGGTTAGTGCATTTTGGGTTGAAAAATCGATTTTTAGCCCAGAAATCGGAATTTGGTCTAATTTTGCTTTTGAAATCGCAATTCTACATCGATTCTAAGTCTAAAAAACCTGAAAAATCTATTTTATTCACCTAGAAAACCGATTTTTCGAAAAATCTGTGCGAAAAATCGATTTTCCAGAGCCAAAAATGGGATTTTCAGCTCAAAATTATTGATTTTTCATGCTAAAATCGCTTTGAAACACTAACTTTGGCTTCAAATTCGGATTTTTCAAAGACAATATACCTAAATTTGATTTTCACCGAGTTTAGCCTATTTTAACCCGAAATTGTTCATTTTTCTGTGGTTAAAATCGATTTTTAGTGATTTTTAGACTGAAAATCAATATTTCCAGTGAAATCTCGGTCAAAAATCGAAGTTTTTCAGCTTTTTTAGCCCTAAAGTCTGAAAAATGAGGGAGAATTCCCCCGCAAATCGACACAAAGCTTAAAGGCGCATGCTCTTGTGAGGTGTTTGGGTCTCGCCGTGAAAACTGAAATAGGCGGGAAATTTGAATTTTAAGGCTGTGTTTTCGAATTTTCATGATTTTTCGGCAATATTTAGGGGTTTCTAGCGTAAAATTGATGAAAATTTTCGATTTCTGACCTAAAGCATCCAGAAAATATCGATTTTTGCGCTGAAAATCATCAAAAAATGTCTGAAAATCGATAAATTTGCAGATT</canonical>
            <polymorphic>CCCGGGAAATTTCAAATTTCCTCCAAATTGTTCAATTTTTCAGTGATCATCAAATCAAATCGATTTCTCCTGATCCATAAAAATGTCGAAACAATTCGATTGCTCATTATTGTCAAATTGTCATTCATTTTATATGGATCGTCTTGGAAATATGCAGAATATTCATCAGAATCTGAATTCCACGTCATCTGCATCCTATTCATCTTCTTCTCGGAAACAAATTCTGCCGCTGAAACCGCCGAAAAATCAATATTCACTGCAGCAGTTCCACGATGTCAAGGTTAGTGCATTTTGGGTTGAAAAATCGATTTTTAGCCCAGAAATCGGAATTTGGTCTAATTTTGCTTTTGAAATCGCAATTCTACATCGATTCTAAGTCTAAAAAACCTGAAAAATCTATTTTATTCACCTAGAAAACCGATTTTTCGAAAAATCTGTGCGAAAAATCGATTTTCCAGAGCCAAAAATGGGATTTTCAGCTCAAAATTATTGATTTTTCWTGCTAAAATCGCTTTGAAACACTAACTTTGGCTTCAAATTCGGATTTTTCAAAGACAATATACCTAAATTTGATTTTCACCGAGTTTAGCCTATTTTAACCCGAAATTGTTCATTTTTCTGTGGTTAAAATCGATTTTTAGTGATTTTTAGACTGAAAATCAATATTTCCAGTGAAATCTCGGTCAAAAATCGAAGTTTTTCAGCTTTTTTAGCCCTAAAGTCTGAAAAATGAGGGAGAATTCCCCCGCAAATCGACACAAAGCTTAAAGGCGCATGCTCTTGTGAGGTGTTTGGGTCTCGCCGTGAAAACTGAAATAGGCGGGAAATTTGAATTTTAAGGCTGTGTTTTCGAATTTTCATGATTTTTCGGCAATATTTAGGGGTTTCTAGCGTAAAATTGATGAAAATTTTCGATTTCTGACCTAAAGCATCCAGAAAATATCGATTTTTGCGCTGAAAATCATCAAAAAATGTCTGAAAATCGATAAATTTGCAGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>499 275 141 85</canonical_bands>
                <polymorphic_bands>774 141 85</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAAATCGCAATTCTACATC</pcr_primer_p1>
		<pcr_primer_p2>TAAAATAGGCTAAACTCGGTGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTGAAATCGCAATTCTACATCGATTCTAAGTCTAAAAAACCTGAAAAATCTATTTTATTCACCTAGAAAACCGATTTTTCGAAAAATCTGTGCGAAAAATCGATTTTCCAGAGCCAAAAATGGGATTTTCAGCTCAAAATTATTGATTTTTCATGCTAAAATCGCTTTGAAACACTAACTTTGGCTTCAAATTCGGATTTTTCAAAGACAATATACCTAAATTTGATTTTCACCGAGTTTAGCCTATTTTA</canonical_amplicon>
		<polymorphic_amplicon>TTGAAATCGCAATTCTACATCGATTCTAAGTCTAAAAAACCTGAAAAATCTATTTTATTCACCTAGAAAACCGATTTTTCGAAAAATCTGTGCGAAAAATCGATTTTCCAGAGCCAAAAATGGGATTTTCAGCTCAAAATTATTGATTTTTCWTGCTAAAATCGCTTTGAAACACTAACTTTGGCTTCAAATTCGGATTTTTCAAAGACAATATACCTAAATTTGATTTTCACCGAGTTTAGCCTATTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23716</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>52142</contig_pos>
        <strand>+</strand>
        <context>GGTTAAAATC[A/G]ATTTTTAGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTTAGCCTATTTTAACCCGAAATTGTTCATTTTTCTGTGGTTAAAATC</left_flank>
        <right_flank>ATTTTTAGTGATTTTTAGACTGAAAATCAATATTTCCAGTGAAATCTCGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGATCGTCTTGGAAATATGCAGAATATTCATCAGAATCTGAATTCCACGTCATCTGCATCCTATTCATCTTCTTCTCGGAAACAAATTCTGCCGCTGAAACCGCCGAAAAATCAATATTCACTGCAGCAGTTCCACGATGTCAAGGTTAGTGCATTTTGGGTTGAAAAATCGATTTTTAGCCCAGAAATCGGAATTTGGTCTAATTTTGCTTTTGAAATCGCAATTCTACATCGATTCTAAGTCTAAAAAACCTGAAAAATCTATTTTATTCACCTAGAAAACCGATTTTTCGAAAAATCTGTGCGAAAAATCGATTTTCCAGAGCCAAAAATGGGATTTTCAGCTCAAAATTATTGATTTTTCATGCTAAAATCGCTTTGAAACACTAACTTTGGCTTCAAATTCGGATTTTTCAAAGACAATATACCTAAATTTGATTTTCACCGAGTTTAGCCTATTTTAACCCGAAATTGTTCATTTTTCTGTGGTTAAAATCGATTTTTAGTGATTTTTAGACTGAAAATCAATATTTCCAGTGAAATCTCGGTCAAAAATCGAAGTTTTTCAGCTTTTTTAGCCCTAAAGTCTGAAAAATGAGGGAGAATTCCCCCGCAAATCGACACAAAGCTTAAAGGCGCATGCTCTTGTGAGGTGTTTGGGTCTCGCCGTGAAAACTGAAATAGGCGGGAAATTTGAATTTTAAGGCTGTGTTTTCGAATTTTCATGATTTTTCGGCAATATTTAGGGGTTTCTAGCGTAAAATTGATGAAAATTTTCGATTTCTGACCTAAAGCATCCAGAAAATATCGATTTTTGCGCTGAAAATCATCAAAAAATGTCTGAAAATCGATAAATTTGCAGATTCAAGGACAACAAGCGGAATCTCAGCCACAAATAGCACCAGTGACAGTATTGGCGCTGAAAAAGAAGGAGAAATTGGAGAAGAATGTGGTGACAATGTTGGAATATCGACAGAAATCGATGAATTTCGGAGGAA</canonical>
            <polymorphic>ATGGATCGTCTTGGAAATATGCAGAATATTCATCAGAATCTGAATTCCACGTCATCTGCATCCTATTCATCTTCTTCTCGGAAACAAATTCTGCCGCTGAAACCGCCGAAAAATCAATATTCACTGCAGCAGTTCCACGATGTCAAGGTTAGTGCATTTTGGGTTGAAAAATCGATTTTTAGCCCAGAAATCGGAATTTGGTCTAATTTTGCTTTTGAAATCGCAATTCTACATCGATTCTAAGTCTAAAAAACCTGAAAAATCTATTTTATTCACCTAGAAAACCGATTTTTCGAAAAATCTGTGCGAAAAATCGATTTTCCAGAGCCAAAAATGGGATTTTCAGCTCAAAATTATTGATTTTTCATGCTAAAATCGCTTTGAAACACTAACTTTGGCTTCAAATTCGGATTTTTCAAAGACAATATACCTAAATTTGATTTTCACCGAGTTTAGCCTATTTTAACCCGAAATTGTTCATTTTTCTGTGGTTAAAATCRATTTTTAGTGATTTTTAGACTGAAAATCAATATTTCCAGTGAAATCTCGGTCAAAAATCGAAGTTTTTCAGCTTTTTTAGCCCTAAAGTCTGAAAAATGAGGGAGAATTCCCCCGCAAATCGACACAAAGCTTAAAGGCGCATGCTCTTGTGAGGTGTTTGGGTCTCGCCGTGAAAACTGAAATAGGCGGGAAATTTGAATTTTAAGGCTGTGTTTTCGAATTTTCATGATTTTTCGGCAATATTTAGGGGTTTCTAGCGTAAAATTGATGAAAATTTTCGATTTCTGACCTAAAGCATCCAGAAAATATCGATTTTTGCGCTGAAAATCATCAAAAAATGTCTGAAAATCGATAAATTTGCAGATTCAAGGACAACAAGCGGAATCTCAGCCACAAATAGCACCAGTGACAGTATTGGCGCTGAAAAAGAAGGAGAAATTGGAGAAGAATGTGGTGACAATGTTGGAATATCGACAGAAATCGATGAATTTCGGAGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>312 184 172 132 80 62 40 18</canonical_bands>
                <polymorphic_bands>496 172 132 80 62 40 18</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>184 173 122 97 62 62 62 60 59 40 31 21 17 10</canonical_bands>
                <polymorphic_bands>244 173 122 97 62 62 62 59 40 31 21 17 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAAAATCGCTTTGAAACACTAA</pcr_primer_p1>
		<pcr_primer_p2>CTCCCTCATTTTTCAGACTTTA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>CTAAAATCGCTTTGAAACACTAACTTTGGCTTCAAATTCGGATTTTTCAAAGACAATATACCTAAATTTGATTTTCACCGAGTTTAGCCTATTTTAACCCGAAATTGTTCATTTTTCTGTGGTTAAAATCGATTTTTAGTGATTTTTAGACTGAAAATCAATATTTCCAGTGAAATCTCGGTCAAAAATCGAAGTTTTTCAGCTTTTTTAGCCCTAAAGTCTGAAAAATGAGGGAG</canonical_amplicon>
		<polymorphic_amplicon>CTAAAATCGCTTTGAAACACTAACTTTGGCTTCAAATTCGGATTTTTCAAAGACAATATACCTAAATTTGATTTTCACCGAGTTTAGCCTATTTTAACCCGAAATTGTTCATTTTTCTGTGGTTAAAATCRATTTTTAGTGATTTTTAGACTGAAAATCAATATTTCCAGTGAAATCTCGGTCAAAAATCGAAGTTTTTCAGCTTTTTTAGCCCTAAAGTCTGAAAAATGAGGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23717</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>62099</contig_pos>
        <strand>+</strand>
        <context>GGTTTCAAGA[A/T]CTCAAATTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGA</left_flank>
        <right_flank>CTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCATCCGAATAATCTGAAAATCGAAAATTGTCAGATTTTTAGGTTTTTAACGCCAAAATGTTTGCCTTGTTATGGCAATTCGAACGCACCTAATTTCAGCTTTCAGAACCTTCTAGAACAATTTCTATAACCGTTTTTCCGATTTTCAGCCAAAAAATCTGAAAATTCGAAATTTGGCTATAAAAACTTTTCTAGAGGGGCTTAGGCAACAAATTCAAATGCATTCAAATTGCCAAAACACGGCAAATATTTTGACATAAAAAATTTGAGAATCTAAAAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGGAAAAATGGCTGTAAAAATTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTTTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAAATTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAAATTTGAAAATCAAAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTATCGTTATCAGTTTGGCACTTTGGTTTTGGCACCCGTTTTATGCAGCGATTTTGACATTGGTGAGTCTTTTTGCAGTCTGAATTGCGTTTTTCAAAGTTTAGAGGCTTACAAAAGTAGGTCAAAGTTGTCAGAGGAGTTTGAAAGTTTTACAGTATATTAAATAAAATACAGG</canonical>
            <polymorphic>TTTCATCCGAATAATCTGAAAATCGAAAATTGTCAGATTTTTAGGTTTTTAACGCCAAAATGTTTGCCTTGTTATGGCAATTCGAACGCACCTAATTTCAGCTTTCAGAACCTTCTAGAACAATTTCTATAACCGTTTTTCCGATTTTCAGCCAAAAAATCTGAAAATTCGAAATTTGGCTATAAAAACTTTTCTAGAGGGGCTTAGGCAACAAATTCAAATGCATTCAAATTGCCAAAACACGGCAAATATTTTGACATAAAAAATTTGAGAATCTAAAAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGGAAAAATGGCTGTAAAAATTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTTTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAWCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAAATTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAAATTTGAAAATCAAAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTATCGTTATCAGTTTGGCACTTTGGTTTTGGCACCCGTTTTATGCAGCGATTTTGACATTGGTGAGTCTTTTTGCAGTCTGAATTGCGTTTTTCAAAGTTTAGAGGCTTACAAAAGTAGGTCAAAGTTGTCAGAGGAGTTTGAAAGTTTTACAGTATATTAAATAAAATACAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>500 255 144 101</canonical_bands>
                <polymorphic_bands>644 255 101</polymorphic_bands>
            </assay>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>130 120 104 101 96 94 86 68 50 50 31 28 23 19</canonical_bands>
                <polymorphic_bands>136 130 120 104 101 96 94 68 50 31 28 23 19</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTTCTAGAATGTTCCGAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTGAAAATCTGAAAAATCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTTTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGATTTTCAG</canonical_amplicon>
		<polymorphic_amplicon>TTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTTTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAWCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGATTTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23718</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>62257</contig_pos>
        <strand>+</strand>
        <context>AAAATTTCAA[A/C]TATTCAGATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTCCAAAAAAAAATTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAA</left_flank>
        <right_flank>TATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTGAAAATTCGAAATTTGGCTATAAAAACTTTTCTAGAGGGGCTTAGGCAACAAATTCAAATGCATTCAAATTGCCAAAACACGGCAAATATTTTGACATAAAAAATTTGAGAATCTAAAAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGGAAAAATGGCTGTAAAAATTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTTTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAAATTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAAATTTGAAAATCAAAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTATCGTTATCAGTTTGGCACTTTGGTTTTGGCACCCGTTTTATGCAGCGATTTTGACATTGGTGAGTCTTTTTGCAGTCTGAATTGCGTTTTTCAAAGTTTAGAGGCTTACAAAAGTAGGTCAAAGTTGTCAGAGGAGTTTGAAAGTTTTACAGTATATTAAATAAAATACAGGCTTCATTTTTGTAGTTGACACTTTTTTTTGAAAATTAAGTCCTAGGGAGATATGCTAATTTTCCTAAAGACCAGTCAAAATTCGGAAATTTTGGTCAAAATGACATATTTCGATTGTCTGAAAATCTAGGTCAAACTTTTTCGATTTGTCTGAAAATT</canonical>
            <polymorphic>ATCTGAAAATTCGAAATTTGGCTATAAAAACTTTTCTAGAGGGGCTTAGGCAACAAATTCAAATGCATTCAAATTGCCAAAACACGGCAAATATTTTGACATAAAAAATTTGAGAATCTAAAAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGGAAAAATGGCTGTAAAAATTGTTCTAGAATGTTCCGAAAGCTGAAATTAGGTGCATTTAAATTTTCGCAACAAGGCAAACATTTTGGCATCAAAAACTTGAAACTTTGAATTTTCAGATTTTCAGATTTTTTGGCTGAAAATCGAAAAAATTGCTATAAAAAATTTTCTAGAAGGTTTCAAGAGCTCAAATTTGGTGCATTCGAATTGCCAGAAAATGGCGGATGTTTTCAATTTAAAAATTTTGATTTTCAGATTTTTCAGATTTTCAGCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAAATTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAMTATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAAATTTGAAAATCAAAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTATCGTTATCAGTTTGGCACTTTGGTTTTGGCACCCGTTTTATGCAGCGATTTTGACATTGGTGAGTCTTTTTGCAGTCTGAATTGCGTTTTTCAAAGTTTAGAGGCTTACAAAAGTAGGTCAAAGTTGTCAGAGGAGTTTGAAAGTTTTACAGTATATTAAATAAAATACAGGCTTCATTTTTGTAGTTGACACTTTTTTTTGAAAATTAAGTCCTAGGGAGATATGCTAATTTTCCTAAAGACCAGTCAAAATTCGGAAATTTTGGTCAAAATGACATATTTCGATTGTCTGAAAATCTAGGTCAAACTTTTTCGATTTGTCTGAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 409 92</canonical_bands>
                <polymorphic_bands>908 92</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCAAAAATCAAAATTTCAG</pcr_primer_p1>
		<pcr_primer_p2>AAACTGATAACGATAATTGTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>GCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAAATTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAATATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAAATTTGAAAATCAAAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTATCGTTATCAGTTT</canonical_amplicon>
		<polymorphic_amplicon>GCCAAAAATCAAAATTTCAGATTTTTCCAAAAAAAAATTTTTTAGACCCCAATTTTTTCAAAAAAATTTCAAMTATTCAGATGACTGTGGTCGCTTGGAATGTGCTTACCGTATTTCAAGGCTTCATAGAGTACATACATCTGCGAAGGGACATGGAAGATGTGGATTGGTATTTCAAAAATTTGAAAATCAAAATCCCTGCCGAGAAGACGTTGGGCTGGTTTCCATGGTGGGAGACAATTATCGTTATCAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23719</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>62971</contig_pos>
        <strand></strand>
        <context>tctgaaactt[C/T]cagacaaaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCAACTACAAAAATGAAGCTCAGGTCGTGTTTAGTATAATCTGAAACTT</left_flank>
        <right_flank>CAGACAAAATGAAATGGTTTGCGCTAAGTTTTCAGACAGCCGAAAAATGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGATTTTGACATTGGTGAGTCTTTTTGCAGTCTGAATTGCGTTTTTCAAAGTTTAGAGGCTTACAAAAGTAGGTCAAAGTTGTCAGAGGAGTTTGAAAGTTTTACAGTATATTAAATAAAATACAGGCTTCATTTTTGTAGTTGACACTTTTTTTTGAAAATTAAGTCCTAGGGAGATATGCTAATTTTCCTAAAGACCAGTCAAAATTCGGAAATTTTGGTCAAAATGACATATTTCGATTGTCTGAAAATCTAGGTCAAACTTTTTCGATTTGTCTGAAAATTTCAGAGTACACTAAACAAAACAAGAGGTTTCTTTTTTTAGCTGACAACTTTTTTGAAAAATCAAGTCCTAGAGAGATACGCCACGTGGAAGCGGGCTACCTCTCCTAGGCTCCAGGCTTCTGATGCGGCATATCTCCCTAGGACTTGATTTTTCAAAAAAGGTGTCAACTACAAAAATGAAGCTCAGGTCGTGTTTAGTATAATCTGAAACTTCCAGACAAAATGAAATGGTTTGCGCTAAGTTTTCAGACAGCCGAAAAATGATATTTTTGACCGAAATTTCAATTTTTCACTTATTTTGGGAATTGGGCTATATCTCCCCAAAACATGATTTTCCAAAAGAAGTGTTAACTACAAACATGTAGCTCTAGTGCTGTTTAGTATGCCCTGTAATTTTCAGACAAATCTGACTACTCTGATATCCTTCTATCACAGTAGTTCTGTAACTCCCTGAAAACGCTGGAAAATCATCTTTTTCATGCCCAAAATTCAAGGAAACCTCAAAATTTTGATGTTTTATCTTTGTTAGAGCCTTAACAAAGCTCTAAGAAAAGAAAAAAAACAAAAAACCACCCAAGGGGGTCGAACCCCAGAGTGTCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTACAACGGACACACCCCGTAGACAGCGTGGAAAGCGTATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAAGGGGGAGGGT</canonical>
            <polymorphic>GCGATTTTGACATTGGTGAGTCTTTTTGCAGTCTGAATTGCGTTTTTCAAAGTTTAGAGGCTTACAAAAGTAGGTCAAAGTTGTCAGAGGAGTTTGAAAGTTTTACAGTATATTAAATAAAATACAGGCTTCATTTTTGTAGTTGACACTTTTTTTTGAAAATTAAGTCCTAGGGAGATATGCTAATTTTCCTAAAGACCAGTCAAAATTCGGAAATTTTGGTCAAAATGACATATTTCGATTGTCTGAAAATCTAGGTCAAACTTTTTCGATTTGTCTGAAAATTTCAGAGTACACTAAACAAAACAAGAGGTTTCTTTTTTTAGCTGACAACTTTTTTGAAAAATCAAGTCCTAGAGAGATACGCCACGTGGAAGCGGGCTACCTCTCCTAGGCTCCAGGCTTCTGATGCGGCATATCTCCCTAGGACTTGATTTTTCAAAAAAGGTGTCAACTACAAAAATGAAGCTCAGGTCGTGTTTAGTATAATCTGAAACTTYCAGACAAAATGAAATGGTTTGCGCTAAGTTTTCAGACAGCCGAAAAATGATATTTTTGACCGAAATTTCAATTTTTCACTTATTTTGGGAATTGGGCTATATCTCCCCAAAACATGATTTTCCAAAAGAAGTGTTAACTACAAACATGTAGCTCTAGTGCTGTTTAGTATGCCCTGTAATTTTCAGACAAATCTGACTACTCTGATATCCTTCTATCACAGTAGTTCTGTAACTCCCTGAAAACGCTGGAAAATCATCTTTTTCATGCCCAAAATTCAAGGAAACCTCAAAATTTTGATGTTTTATCTTTGTTAGAGCCTTAACAAAGCTCTAAGAAAAGAAAAAAAACAAAAAACCACCCAAGGGGGTCGAACCCCAGAGTGTCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTACAACGGACACACCCCGTAGACAGCGTGGAAAGCGTATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAAGGGGGAGGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTTTTTGCAGTCTGAATTG</pcr_primer_p1>
		<pcr_primer_p2>CTGTGATAGAAGGATATCAGAGTAGT</pcr_primer_p2>
		<pcr_amplicon_size>702</pcr_amplicon_size>
		<canonical_amplicon>GTCTTTTTGCAGTCTGAATTGCGTTTTTCAAAGTTTAGAGGCTTACAAAAGTAGGTCAAAGTTGTCAGAGGAGTTTGAAAGTTTTACAGTATATTAAATAAAATACAGGCTTCATTTTTGTAGTTGACACTTTTTTTTGAAAATTAAGTCCTAGGGAGATATGCTAATTTTCCTAAAGACCAGTCAAAATTCGGAAATTTTGGTCAAAATGACATATTTCGATTGTCTGAAAATCTAGGTCAAACTTTTTCGATTTGTCTGAAAATTTCAGAGTACACTAAACAAAACAAGAGGTTTCTTTTTTTAGCTGACAACTTTTTTGAAAAATCAAGTCCTAGAGAGATACGCCACGTGGAAGCGGGCTACCTCTCCTAGGCTCCAGGCTTCTGATGCGGCATATCTCCCTAGGACTTGATTTTTCAAAAAAGGTGTCAACTACAAAAATGAAGCTCAGGTCGTGTTTAGTATAATCTGAAACTTCCAGACAAAATGAAATGGTTTGCGCTAAGTTTTCAGACAGCCGAAAAATGATATTTTTGACCGAAATTTCAATTTTTCACTTATTTTGGGAATTGGGCTATATCTCCCCAAAACATGATTTTCCAAAAGAAGTGTTAACTACAAACATGTAGCTCTAGTGCTGTTTAGTATGCCCTGTAATTTTCAGACAAATCTGACTACTCTGATATCCTTCTATCACAG</canonical_amplicon>
		<polymorphic_amplicon>GTCTTTTTGCAGTCTGAATTGCGTTTTTCAAAGTTTAGAGGCTTACAAAAGTAGGTCAAAGTTGTCAGAGGAGTTTGAAAGTTTTACAGTATATTAAATAAAATACAGGCTTCATTTTTGTAGTTGACACTTTTTTTTGAAAATTAAGTCCTAGGGAGATATGCTAATTTTCCTAAAGACCAGTCAAAATTCGGAAATTTTGGTCAAAATGACATATTTCGATTGTCTGAAAATCTAGGTCAAACTTTTTCGATTTGTCTGAAAATTTCAGAGTACACTAAACAAAACAAGAGGTTTCTTTTTTTAGCTGACAACTTTTTTGAAAAATCAAGTCCTAGAGAGATACGCCACGTGGAAGCGGGCTACCTCTCCTAGGCTCCAGGCTTCTGATGCGGCATATCTCCCTAGGACTTGATTTTTCAAAAAAGGTGTCAACTACAAAAATGAAGCTCAGGTCGTGTTTAGTATAATCTGAAACTTYCAGACAAAATGAAATGGTTTGCGCTAAGTTTTCAGACAGCCGAAAAATGATATTTTTGACCGAAATTTCAATTTTTCACTTATTTTGGGAATTGGGCTATATCTCCCCAAAACATGATTTTCCAAAAGAAGTGTTAACTACAAACATGTAGCTCTAGTGCTGTTTAGTATGCCCTGTAATTTTCAGACAAATCTGACTACTCTGATATCCTTCTATCACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23720</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>63106</contig_pos>
        <strand></strand>
        <context>aaagaagtgt[T/C]aactamaaac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTGGGAATTGGGCTATATCTCCCCAAAACATGATTTTCCAAAAGAAGTGT</left_flank>
        <right_flank>AACTACAAACATGTAGCTCTAGTGCTGTTTAGTATGCCCTGTAATTTTCA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGTAGTTGACACTTTTTTTTGAAAATTAAGTCCTAGGGAGATATGCTAATTTTCCTAAAGACCAGTCAAAATTCGGAAATTTTGGTCAAAATGACATATTTCGATTGTCTGAAAATCTAGGTCAAACTTTTTCGATTTGTCTGAAAATTTCAGAGTACACTAAACAAAACAAGAGGTTTCTTTTTTTAGCTGACAACTTTTTTGAAAAATCAAGTCCTAGAGAGATACGCCACGTGGAAGCGGGCTACCTCTCCTAGGCTCCAGGCTTCTGATGCGGCATATCTCCCTAGGACTTGATTTTTCAAAAAAGGTGTCAACTACAAAAATGAAGCTCAGGTCGTGTTTAGTATAATCTGAAACTTCCAGACAAAATGAAATGGTTTGCGCTAAGTTTTCAGACAGCCGAAAAATGATATTTTTGACCGAAATTTCAATTTTTCACTTATTTTGGGAATTGGGCTATATCTCCCCAAAACATGATTTTCCAAAAGAAGTGTTAACTACAAACATGTAGCTCTAGTGCTGTTTAGTATGCCCTGTAATTTTCAGACAAATCTGACTACTCTGATATCCTTCTATCACAGTAGTTCTGTAACTCCCTGAAAACGCTGGAAAATCATCTTTTTCATGCCCAAAATTCAAGGAAACCTCAAAATTTTGATGTTTTATCTTTGTTAGAGCCTTAACAAAGCTCTAAGAAAAGAAAAAAAACAAAAAACCACCCAAGGGGGTCGAACCCCAGAGTGTCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTACAACGGACACACCCCGTAGACAGCGTGGAAAGCGTATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAAGGGGGAGGGTGGATTTTCAGAATTTTTTAATTTAAAAAAATTCAAAAATTCAAATTACTGTAACTTTTACAGTTTTAGACGGATTTTTGTGATTTTTATACTAAATTTTTTGCAGTGTATCCTTGTCTTGTACTCCTACACCTTC</canonical>
            <polymorphic>TTTGTAGTTGACACTTTTTTTTGAAAATTAAGTCCTAGGGAGATATGCTAATTTTCCTAAAGACCAGTCAAAATTCGGAAATTTTGGTCAAAATGACATATTTCGATTGTCTGAAAATCTAGGTCAAACTTTTTCGATTTGTCTGAAAATTTCAGAGTACACTAAACAAAACAAGAGGTTTCTTTTTTTAGCTGACAACTTTTTTGAAAAATCAAGTCCTAGAGAGATACGCCACGTGGAAGCGGGCTACCTCTCCTAGGCTCCAGGCTTCTGATGCGGCATATCTCCCTAGGACTTGATTTTTCAAAAAAGGTGTCAACTACAAAAATGAAGCTCAGGTCGTGTTTAGTATAATCTGAAACTTCCAGACAAAATGAAATGGTTTGCGCTAAGTTTTCAGACAGCCGAAAAATGATATTTTTGACCGAAATTTCAATTTTTCACTTATTTTGGGAATTGGGCTATATCTCCCCAAAACATGATTTTCCAAAAGAAGTGTYAACTACAAACATGTAGCTCTAGTGCTGTTTAGTATGCCCTGTAATTTTCAGACAAATCTGACTACTCTGATATCCTTCTATCACAGTAGTTCTGTAACTCCCTGAAAACGCTGGAAAATCATCTTTTTCATGCCCAAAATTCAAGGAAACCTCAAAATTTTGATGTTTTATCTTTGTTAGAGCCTTAACAAAGCTCTAAGAAAAGAAAAAAAACAAAAAACCACCCAAGGGGGTCGAACCCCAGAGTGTCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTACAACGGACACACCCCGTAGACAGCGTGGAAAGCGTATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAAGGGGGAGGGTGGATTTTCAGAATTTTTTAATTTAAAAAAATTCAAAAATTCAAATTACTGTAACTTTTACAGTTTTAGACGGATTTTTGTGATTTTTATACTAAATTTTTTGCAGTGTATCCTTGTCTTGTACTCCTACACCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTTAAC</site>
                <isoschizomers>
                    <enzyme>BstHPI</enzyme>
                    <enzyme>HpaI</enzyme>
                    <enzyme>KspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>500 308 183 9</canonical_bands>
                <polymorphic_bands>683 308 9</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>471 197 186 113 28 5</canonical_bands>
                <polymorphic_bands>657 197 113 28 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTTTTTGCAGTCTGAATTG</pcr_primer_p1>
		<pcr_primer_p2>CTGTGATAGAAGGATATCAGAGTAGT</pcr_primer_p2>
		<pcr_amplicon_size>702</pcr_amplicon_size>
		<canonical_amplicon>TTAACTACAAACATGTAGCTCTAGTGCTGTTTAGTATGCCCTGTAATTTTCAGACAAATCTGACTACTCTGATATCCTTCTATCACAG</canonical_amplicon>
		<polymorphic_amplicon>TYAACTACAAACATGTAGCTCTAGTGCTGTTTAGTATGCCCTGTAATTTTCAGACAAATCTGACTACTCTGATATCCTTCTATCACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23721</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>63112</contig_pos>
        <strand></strand>
        <context>gtgtyaacta[C/A]aaacatgtag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATTGGGCTATATCTCCCCAAAACATGATTTTCCAAAAGAAGTGTTAACTA</left_flank>
        <right_flank>AAACATGTAGCTCTAGTGCTGTTTAGTATGCCCTGTAATTTTCAGACAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGACACTTTTTTTTGAAAATTAAGTCCTAGGGAGATATGCTAATTTTCCTAAAGACCAGTCAAAATTCGGAAATTTTGGTCAAAATGACATATTTCGATTGTCTGAAAATCTAGGTCAAACTTTTTCGATTTGTCTGAAAATTTCAGAGTACACTAAACAAAACAAGAGGTTTCTTTTTTTAGCTGACAACTTTTTTGAAAAATCAAGTCCTAGAGAGATACGCCACGTGGAAGCGGGCTACCTCTCCTAGGCTCCAGGCTTCTGATGCGGCATATCTCCCTAGGACTTGATTTTTCAAAAAAGGTGTCAACTACAAAAATGAAGCTCAGGTCGTGTTTAGTATAATCTGAAACTTCCAGACAAAATGAAATGGTTTGCGCTAAGTTTTCAGACAGCCGAAAAATGATATTTTTGACCGAAATTTCAATTTTTCACTTATTTTGGGAATTGGGCTATATCTCCCCAAAACATGATTTTCCAAAAGAAGTGTTAACTACAAACATGTAGCTCTAGTGCTGTTTAGTATGCCCTGTAATTTTCAGACAAATCTGACTACTCTGATATCCTTCTATCACAGTAGTTCTGTAACTCCCTGAAAACGCTGGAAAATCATCTTTTTCATGCCCAAAATTCAAGGAAACCTCAAAATTTTGATGTTTTATCTTTGTTAGAGCCTTAACAAAGCTCTAAGAAAAGAAAAAAAACAAAAAACCACCCAAGGGGGTCGAACCCCAGAGTGTCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTACAACGGACACACCCCGTAGACAGCGTGGAAAGCGTATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAAGGGGGAGGGTGGATTTTCAGAATTTTTTAATTTAAAAAAATTCAAAAATTCAAATTACTGTAACTTTTACAGTTTTAGACGGATTTTTGTGATTTTTATACTAAATTTTTTGCAGTGTATCCTTGTCTTGTACTCCTACACCTTCCTGGAC</canonical>
            <polymorphic>GTTGACACTTTTTTTTGAAAATTAAGTCCTAGGGAGATATGCTAATTTTCCTAAAGACCAGTCAAAATTCGGAAATTTTGGTCAAAATGACATATTTCGATTGTCTGAAAATCTAGGTCAAACTTTTTCGATTTGTCTGAAAATTTCAGAGTACACTAAACAAAACAAGAGGTTTCTTTTTTTAGCTGACAACTTTTTTGAAAAATCAAGTCCTAGAGAGATACGCCACGTGGAAGCGGGCTACCTCTCCTAGGCTCCAGGCTTCTGATGCGGCATATCTCCCTAGGACTTGATTTTTCAAAAAAGGTGTCAACTACAAAAATGAAGCTCAGGTCGTGTTTAGTATAATCTGAAACTTCCAGACAAAATGAAATGGTTTGCGCTAAGTTTTCAGACAGCCGAAAAATGATATTTTTGACCGAAATTTCAATTTTTCACTTATTTTGGGAATTGGGCTATATCTCCCCAAAACATGATTTTCCAAAAGAAGTGTTAACTAMAAACATGTAGCTCTAGTGCTGTTTAGTATGCCCTGTAATTTTCAGACAAATCTGACTACTCTGATATCCTTCTATCACAGTAGTTCTGTAACTCCCTGAAAACGCTGGAAAATCATCTTTTTCATGCCCAAAATTCAAGGAAACCTCAAAATTTTGATGTTTTATCTTTGTTAGAGCCTTAACAAAGCTCTAAGAAAAGAAAAAAAACAAAAAACCACCCAAGGGGGTCGAACCCCAGAGTGTCGGATTCAAAACAAGATGCTTTGCCGCCTGCGCTACAACGGACACACCCCGTAGACAGCGTGGAAAGCGTATAAGAAGAGGGAGGGTGGTGGCGCCGGGCGGCGAAGGGGGAGGGTGGATTTTCAGAATTTTTTAATTTAAAAAAATTCAAAAATTCAAATTACTGTAACTTTTACAGTTTTAGACGGATTTTTGTGATTTTTATACTAAATTTTTTGCAGTGTATCCTTGTCTTGTACTCCTACACCTTCCTGGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTTTTTGCAGTCTGAATTG</pcr_primer_p1>
		<pcr_primer_p2>CTGTGATAGAAGGATATCAGAGTAGT</pcr_primer_p2>
		<pcr_amplicon_size>702</pcr_amplicon_size>
		<canonical_amplicon>ACAAACATGTAGCTCTAGTGCTGTTTAGTATGCCCTGTAATTTTCAGACAAATCTGACTACTCTGATATCCTTCTATCACAG</canonical_amplicon>
		<polymorphic_amplicon>AMAAACATGTAGCTCTAGTGCTGTTTAGTATGCCCTGTAATTTTCAGACAAATCTGACTACTCTGATATCCTTCTATCACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23722</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>109993</contig_pos>
        <strand>+</strand>
        <context>TTAAATAGCC[A/T]AAAATAGCCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGGCCGATACAGCAGCCGAGTTGTATATGAAGTTAGTCATTTAAATAGCC</left_flank>
        <right_flank>AAAATAGCCCTAAAATCGAGACAAATCCACCCAGGATTACTGTAGCTAGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGCTCCCAAGGAACAAAGCGGCCTTCGTTCACCGAGATTCCATCGTTTTCTCCAGTAAAAATGCGCAAATCGTCTTCTCTGAAACGAGAAACAGCCCAGAATCGGTCGATGCATCAGAATCCATTGCTCATCTCAATCGAATTCCATGGCATATCGATTCGTTTGCCGAACCAAAACGGGATTCTCCACCAAATCGAGCCCTTCTTCGTGCGATTCTTTGTCTTCGACGCTCTGGATGGTCGTAGAATCTGCGAGGAGTTTCAAATTCTGGTCAACGGAGACGATTTGCACGTTTCGGAGCCAGTTTTCGACTCTAGTTGCCTGGTGAATGGCATCAAACGGTCCCTTCTGGTGGAGAGAACTGCCAATAGAGCGCTTTTGCAACTTCCACCCACTACACAGAACCATAAGGATCTTTGGCTGGTTGTTAGAGTGGATAGGGGCTTGTCGGCCGATACAGCAGCCGAGTTGTATATGAAGTTAGTCATTTAAATAGCCAAAAATAGCCCTAAAATCGAGACAAATCCACCCAGGATTACTGTAGCTAGGTATTCTAGGGATACTGTAGGTGAAAGCCACGGATAGGACACTCAGGGTTACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGAGACTGATTGACTCAGGATTACTGTAGCTAGCTATCCTAGGGATACTGTAAGTACGGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGATGAATCTGGAAAGAAGG</canonical>
            <polymorphic>AGGCTCCCAAGGAACAAAGCGGCCTTCGTTCACCGAGATTCCATCGTTTTCTCCAGTAAAAATGCGCAAATCGTCTTCTCTGAAACGAGAAACAGCCCAGAATCGGTCGATGCATCAGAATCCATTGCTCATCTCAATCGAATTCCATGGCATATCGATTCGTTTGCCGAACCAAAACGGGATTCTCCACCAAATCGAGCCCTTCTTCGTGCGATTCTTTGTCTTCGACGCTCTGGATGGTCGTAGAATCTGCGAGGAGTTTCAAATTCTGGTCAACGGAGACGATTTGCACGTTTCGGAGCCAGTTTTCGACTCTAGTTGCCTGGTGAATGGCATCAAACGGTCCCTTCTGGTGGAGAGAACTGCCAATAGAGCGCTTTTGCAACTTCCACCCACTACACAGAACCATAAGGATCTTTGGCTGGTTGTTAGAGTGGATAGGGGCTTGTCGGCCGATACAGCAGCCGAGTTGTATATGAAGTTAGTCATTTAAATAGCCWAAAATAGCCCTAAAATCGAGACAAATCCACCCAGGATTACTGTAGCTAGGTATTCTAGGGATACTGTAGGTGAAAGCCACGGATAGGACACTCAGGGTTACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGAGACTGATTGACTCAGGATTACTGTAGCTAGCTATCCTAGGGATACTGTAAGTACGGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGATGAATCTGGAAAGAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCCACTACACAGAACCATAAG</pcr_primer_p1>
		<pcr_primer_p2>TCGTGTCTCATATCTAGCGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACCCACTACACAGAACCATAAGGATCTTTGGCTGGTTGTTAGAGTGGATAGGGGCTTGTCGGCCGATACAGCAGCCGAGTTGTATATGAAGTTAGTCATTTAAATAGCCAAAAATAGCCCTAAAATCGAGACAAATCCACCCAGGATTACTGTAGCTAGGTATTCTAGGGATACTGTAGGTGAAAGCCACGGATAGGACACTCAGGGTTACTGTAGGTACGGATTACGCTAGATATGAGACACGA</canonical_amplicon>
		<polymorphic_amplicon>ACCCACTACACAGAACCATAAGGATCTTTGGCTGGTTGTTAGAGTGGATAGGGGCTTGTCGGCCGATACAGCAGCCGAGTTGTATATGAAGTTAGTCATTTAAATAGCCWAAAATAGCCCTAAAATCGAGACAAATCCACCCAGGATTACTGTAGCTAGGTATTCTAGGGATACTGTAGGTGAAAGCCACGGATAGGACACTCAGGGTTACTGTAGGTACGGATTACGCTAGATATGAGACACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23723</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>110257</contig_pos>
        <strand>+</strand>
        <context>ATAGCGTCAG[C/T]GTTACTGTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAG</left_flank>
        <right_flank>GTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTCTGGTCAACGGAGACGATTTGCACGTTTCGGAGCCAGTTTTCGACTCTAGTTGCCTGGTGAATGGCATCAAACGGTCCCTTCTGGTGGAGAGAACTGCCAATAGAGCGCTTTTGCAACTTCCACCCACTACACAGAACCATAAGGATCTTTGGCTGGTTGTTAGAGTGGATAGGGGCTTGTCGGCCGATACAGCAGCCGAGTTGTATATGAAGTTAGTCATTTAAATAGCCAAAAATAGCCCTAAAATCGAGACAAATCCACCCAGGATTACTGTAGCTAGGTATTCTAGGGATACTGTAGGTGAAAGCCACGGATAGGACACTCAGGGTTACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGAGACTGATTGACTCAGGATTACTGTAGCTAGCTATCCTAGGGATACTGTAAGTACGGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGATGAATCTGGAAAGAAGGTAACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGCGAAATCCACCCAGGATTACTGTAGCTAGCTATCCTAGGGTTACTGTAAGAACGGAATACCGTAGGTTTGAGTCGAAAATTGTCTAGAAATGGAAAGGACTATTGTAGAATCGATCTAATGAATCTAGAGAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATCGTGAGAAATCGGTCCAGGAATACTGTAGCTAGGTTC</canonical>
            <polymorphic>AATTCTGGTCAACGGAGACGATTTGCACGTTTCGGAGCCAGTTTTCGACTCTAGTTGCCTGGTGAATGGCATCAAACGGTCCCTTCTGGTGGAGAGAACTGCCAATAGAGCGCTTTTGCAACTTCCACCCACTACACAGAACCATAAGGATCTTTGGCTGGTTGTTAGAGTGGATAGGGGCTTGTCGGCCGATACAGCAGCCGAGTTGTATATGAAGTTAGTCATTTAAATAGCCAAAAATAGCCCTAAAATCGAGACAAATCCACCCAGGATTACTGTAGCTAGGTATTCTAGGGATACTGTAGGTGAAAGCCACGGATAGGACACTCAGGGTTACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGAGACTGATTGACTCAGGATTACTGTAGCTAGCTATCCTAGGGATACTGTAAGTACGGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGYGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGATGAATCTGGAAAGAAGGTAACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGCGAAATCCACCCAGGATTACTGTAGCTAGCTATCCTAGGGTTACTGTAAGAACGGAATACCGTAGGTTTGAGTCGAAAATTGTCTAGAAATGGAAAGGACTATTGTAGAATCGATCTAATGAATCTAGAGAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATCGTGAGAAATCGGTCCAGGAATACTGTAGCTAGGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>143 128 114 93 69 49 43 42 37 36 36 33 27 27 24 23 19 19 11 11 7 5 4</canonical_bands>
                <polymorphic_bands>143 138 128 93 69 49 43 42 37 36 36 33 27 27 23 19 19 11 11 7 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTACGCTAGATATGAGACAC</pcr_primer_p1>
		<pcr_primer_p2>CATACACATACAGTAACCCATGA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGAGACTGATTGACTCAGGATTACTGTAGCTAGCTATCCTAGGGATACTGTAAGTACGGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATG</canonical_amplicon>
		<polymorphic_amplicon>GGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGAGACTGATTGACTCAGGATTACTGTAGCTAGCTATCCTAGGGATACTGTAAGTACGGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGYGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23724</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>110311</contig_pos>
        <strand>+</strand>
        <context>ACTGTAGATC[A/G]GATCTAATGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATC</left_flank>
        <right_flank>GATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCCTGGTGAATGGCATCAAACGGTCCCTTCTGGTGGAGAGAACTGCCAATAGAGCGCTTTTGCAACTTCCACCCACTACACAGAACCATAAGGATCTTTGGCTGGTTGTTAGAGTGGATAGGGGCTTGTCGGCCGATACAGCAGCCGAGTTGTATATGAAGTTAGTCATTTAAATAGCCAAAAATAGCCCTAAAATCGAGACAAATCCACCCAGGATTACTGTAGCTAGGTATTCTAGGGATACTGTAGGTGAAAGCCACGGATAGGACACTCAGGGTTACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGAGACTGATTGACTCAGGATTACTGTAGCTAGCTATCCTAGGGATACTGTAAGTACGGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGATGAATCTGGAAAGAAGGTAACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGCGAAATCCACCCAGGATTACTGTAGCTAGCTATCCTAGGGTTACTGTAAGAACGGAATACCGTAGGTTTGAGTCGAAAATTGTCTAGAAATGGAAAGGACTATTGTAGAATCGATCTAATGAATCTAGAGAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATCGTGAGAAATCGGTCCAGGAATACTGTAGCTAGGTTCTGCAGAGTTACTGTATCTAGGGACTACTGTAGAATCGATGTGTGTGTGTATGAA</canonical>
            <polymorphic>TTGCCTGGTGAATGGCATCAAACGGTCCCTTCTGGTGGAGAGAACTGCCAATAGAGCGCTTTTGCAACTTCCACCCACTACACAGAACCATAAGGATCTTTGGCTGGTTGTTAGAGTGGATAGGGGCTTGTCGGCCGATACAGCAGCCGAGTTGTATATGAAGTTAGTCATTTAAATAGCCAAAAATAGCCCTAAAATCGAGACAAATCCACCCAGGATTACTGTAGCTAGGTATTCTAGGGATACTGTAGGTGAAAGCCACGGATAGGACACTCAGGGTTACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGAGACTGATTGACTCAGGATTACTGTAGCTAGCTATCCTAGGGATACTGTAAGTACGGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCRGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGATGAATCTGGAAAGAAGGTAACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGCGAAATCCACCCAGGATTACTGTAGCTAGCTATCCTAGGGTTACTGTAAGAACGGAATACCGTAGGTTTGAGTCGAAAATTGTCTAGAAATGGAAAGGACTATTGTAGAATCGATCTAATGAATCTAGAGAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATCGTGAGAAATCGGTCCAGGAATACTGTAGCTAGGTTCTGCAGAGTTACTGTATCTAGGGACTACTGTAGAATCGATGTGTGTGTGTATGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>505 401 94</canonical_bands>
                <polymorphic_bands>906 94</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAATACCGTAGATTTAAGTTGA</pcr_primer_p1>
		<pcr_primer_p2>TAATCCTTCAGAAACCAATTACA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTA</canonical_amplicon>
		<polymorphic_amplicon>GGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCRGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23725</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>110362</contig_pos>
        <strand></strand>
        <context>TATGAAAATG[G/A]CCAAAAATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATG</left_flank>
        <right_flank>CCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAACCGGTCC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGAGCGCTTTTGCAACTTCCACCCACTACACAGAACCATAAGGATCTTTGGCTGGTTGTTAGAGTGGATAGGGGCTTGTCGGCCGATACAGCAGCCGAGTTGTATATGAAGTTAGTCATTTAAATAGCCAAAAATAGCCCTAAAATCGAGACAAATCCACCCAGGATTACTGTAGCTAGGTATTCTAGGGATACTGTAGGTGAAAGCCACGGATAGGACACTCAGGGTTACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGAGACTGATTGACTCAGGATTACTGTAGCTAGCTATCCTAGGGATACTGTAAGTACGGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGATGAATCTGGAAAGAAGGTAACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGCGAAATCCACCCAGGATTACTGTAGCTAGCTATCCTAGGGTTACTGTAAGAACGGAATACCGTAGGTTTGAGTCGAAAATTGTCTAGAAATGGAAAGGACTATTGTAGAATCGATCTAATGAATCTAGAGAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATCGTGAGAAATCGGTCCAGGAATACTGTAGCTAGGTTCTGCAGAGTTACTGTATCTAGGGACTACTGTAGAATCGATGTGTGTGTGTATGAAAATGGGCCAAAAATCGATCCAGGATTACTGTAGCTAGGTTCTGCAGGATTA</canonical>
            <polymorphic>TAGAGCGCTTTTGCAACTTCCACCCACTACACAGAACCATAAGGATCTTTGGCTGGTTGTTAGAGTGGATAGGGGCTTGTCGGCCGATACAGCAGCCGAGTTGTATATGAAGTTAGTCATTTAAATAGCCAAAAATAGCCCTAAAATCGAGACAAATCCACCCAGGATTACTGTAGCTAGGTATTCTAGGGATACTGTAGGTGAAAGCCACGGATAGGACACTCAGGGTTACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGAGACTGATTGACTCAGGATTACTGTAGCTAGCTATCCTAGGGATACTGTAAGTACGGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGRCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGATGAATCTGGAAAGAAGGTAACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGCGAAATCCACCCAGGATTACTGTAGCTAGCTATCCTAGGGTTACTGTAAGAACGGAATACCGTAGGTTTGAGTCGAAAATTGTCTAGAAATGGAAAGGACTATTGTAGAATCGATCTAATGAATCTAGAGAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATCGTGAGAAATCGGTCCAGGAATACTGTAGCTAGGTTCTGCAGAGTTACTGTATCTAGGGACTACTGTAGAATCGATGTGTGTGTGTATGAAAATGGGCCAAAAATCGATCCAGGATTACTGTAGCTAGGTTCTGCAGGATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGGCCA</site>
                <isoschizomers>
                    <enzyme>BalI</enzyme>
                    <enzyme>MlsI</enzyme>
                    <enzyme>MluNI</enzyme>
                    <enzyme>MscI</enzyme>
                    <enzyme>Msp20I</enzyme>
                </isoschizomers>
                <canonical_bands>500 350 150</canonical_bands>
                <polymorphic_bands>850 150</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>417 350 105 83 45</canonical_bands>
                <polymorphic_bands>767 105 83 45</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>417 350 152 81</canonical_bands>
                <polymorphic_bands>767 152 81</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>187 104 103 90 68 64 52 38 37 33 31 31 31 27 25 23 18 12 10 8 4 4</canonical_bands>
                <polymorphic_bands>187 104 103 90 68 64 56 52 38 37 33 31 31 27 23 18 12 10 8 4 4</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 350 150</canonical_bands>
                <polymorphic_bands>850 150</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAATACCGTAGATTTAAGTTGA</pcr_primer_p1>
		<pcr_primer_p2>TAATCCTTCAGAAACCAATTACA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTA</canonical_amplicon>
		<polymorphic_amplicon>GGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGRCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23726</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>110395</contig_pos>
        <strand>+</strand>
        <context>GAGCCCAAAA[A/C]YCGTGGAAAY</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAA</left_flank>
        <right_flank>CCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACCATAAGGATCTTTGGCTGGTTGTTAGAGTGGATAGGGGCTTGTCGGCCGATACAGCAGCCGAGTTGTATATGAAGTTAGTCATTTAAATAGCCAAAAATAGCCCTAAAATCGAGACAAATCCACCCAGGATTACTGTAGCTAGGTATTCTAGGGATACTGTAGGTGAAAGCCACGGATAGGACACTCAGGGTTACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGAGACTGATTGACTCAGGATTACTGTAGCTAGCTATCCTAGGGATACTGTAAGTACGGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGATGAATCTGGAAAGAAGGTAACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGCGAAATCCACCCAGGATTACTGTAGCTAGCTATCCTAGGGTTACTGTAAGAACGGAATACCGTAGGTTTGAGTCGAAAATTGTCTAGAAATGGAAAGGACTATTGTAGAATCGATCTAATGAATCTAGAGAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATCGTGAGAAATCGGTCCAGGAATACTGTAGCTAGGTTCTGCAGAGTTACTGTATCTAGGGACTACTGTAGAATCGATGTGTGTGTGTATGAAAATGGGCCAAAAATCGATCCAGGATTACTGTAGCTAGGTTCTGCAGGATTACTGTACTTGAGGACTACTATAGACGCGATCTGA</canonical>
            <polymorphic>GAACCATAAGGATCTTTGGCTGGTTGTTAGAGTGGATAGGGGCTTGTCGGCCGATACAGCAGCCGAGTTGTATATGAAGTTAGTCATTTAAATAGCCAAAAATAGCCCTAAAATCGAGACAAATCCACCCAGGATTACTGTAGCTAGGTATTCTAGGGATACTGTAGGTGAAAGCCACGGATAGGACACTCAGGGTTACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGAGACTGATTGACTCAGGATTACTGTAGCTAGCTATCCTAGGGATACTGTAAGTACGGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAAMCCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGATGAATCTGGAAAGAAGGTAACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGCGAAATCCACCCAGGATTACTGTAGCTAGCTATCCTAGGGTTACTGTAAGAACGGAATACCGTAGGTTTGAGTCGAAAATTGTCTAGAAATGGAAAGGACTATTGTAGAATCGATCTAATGAATCTAGAGAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATCGTGAGAAATCGGTCCAGGAATACTGTAGCTAGGTTCTGCAGAGTTACTGTATCTAGGGACTACTGTAGAATCGATGTGTGTGTGTATGAAAATGGGCCAAAAATCGATCCAGGATTACTGTAGCTAGGTTCTGCAGGATTACTGTACTTGAGGACTACTATAGACGCGATCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAATACCGTAGATTTAAGTTGA</pcr_primer_p1>
		<pcr_primer_p2>CCTAGGTACAGTAATCCTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGG</canonical_amplicon>
		<polymorphic_amplicon>GGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAAMCCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23727</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>110396</contig_pos>
        <strand></strand>
        <context>AGCCCAAAAM[C/T]CGTGGAAAYC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAAC</left_flank>
        <right_flank>CGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACTG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCATAAGGATCTTTGGCTGGTTGTTAGAGTGGATAGGGGCTTGTCGGCCGATACAGCAGCCGAGTTGTATATGAAGTTAGTCATTTAAATAGCCAAAAATAGCCCTAAAATCGAGACAAATCCACCCAGGATTACTGTAGCTAGGTATTCTAGGGATACTGTAGGTGAAAGCCACGGATAGGACACTCAGGGTTACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGAGACTGATTGACTCAGGATTACTGTAGCTAGCTATCCTAGGGATACTGTAAGTACGGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGATGAATCTGGAAAGAAGGTAACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGCGAAATCCACCCAGGATTACTGTAGCTAGCTATCCTAGGGTTACTGTAAGAACGGAATACCGTAGGTTTGAGTCGAAAATTGTCTAGAAATGGAAAGGACTATTGTAGAATCGATCTAATGAATCTAGAGAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATCGTGAGAAATCGGTCCAGGAATACTGTAGCTAGGTTCTGCAGAGTTACTGTATCTAGGGACTACTGTAGAATCGATGTGTGTGTGTATGAAAATGGGCCAAAAATCGATCCAGGATTACTGTAGCTAGGTTCTGCAGGATTACTGTACTTGAGGACTACTATAGACGCGATCTGAG</canonical>
            <polymorphic>AACCATAAGGATCTTTGGCTGGTTGTTAGAGTGGATAGGGGCTTGTCGGCCGATACAGCAGCCGAGTTGTATATGAAGTTAGTCATTTAAATAGCCAAAAATAGCCCTAAAATCGAGACAAATCCACCCAGGATTACTGTAGCTAGGTATTCTAGGGATACTGTAGGTGAAAGCCACGGATAGGACACTCAGGGTTACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGAGACTGATTGACTCAGGATTACTGTAGCTAGCTATCCTAGGGATACTGTAAGTACGGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACYCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGATGAATCTGGAAAGAAGGTAACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGCGAAATCCACCCAGGATTACTGTAGCTAGCTATCCTAGGGTTACTGTAAGAACGGAATACCGTAGGTTTGAGTCGAAAATTGTCTAGAAATGGAAAGGACTATTGTAGAATCGATCTAATGAATCTAGAGAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATCGTGAGAAATCGGTCCAGGAATACTGTAGCTAGGTTCTGCAGAGTTACTGTATCTAGGGACTACTGTAGAATCGATGTGTGTGTGTATGAAAATGGGCCAAAAATCGATCCAGGATTACTGTAGCTAGGTTCTGCAGGATTACTGTACTTGAGGACTACTATAGACGCGATCTGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>313 214 127 112 110 53 47 24</canonical_bands>
                <polymorphic_bands>313 267 127 112 110 47 24</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 326 174</canonical_bands>
                <polymorphic_bands>826 174</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAATACCGTAGATTTAAGTTGA</pcr_primer_p1>
		<pcr_primer_p2>CCTAGGTACAGTAATCCTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGG</canonical_amplicon>
		<polymorphic_amplicon>GGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACYCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23728</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>110405</contig_pos>
        <strand>+</strand>
        <context>MYCGTGGAAA[C/T]CCGGTCCAGR</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAA</left_flank>
        <right_flank>CCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATCTTTGGCTGGTTGTTAGAGTGGATAGGGGCTTGTCGGCCGATACAGCAGCCGAGTTGTATATGAAGTTAGTCATTTAAATAGCCAAAAATAGCCCTAAAATCGAGACAAATCCACCCAGGATTACTGTAGCTAGGTATTCTAGGGATACTGTAGGTGAAAGCCACGGATAGGACACTCAGGGTTACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGAGACTGATTGACTCAGGATTACTGTAGCTAGCTATCCTAGGGATACTGTAAGTACGGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGATGAATCTGGAAAGAAGGTAACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGCGAAATCCACCCAGGATTACTGTAGCTAGCTATCCTAGGGTTACTGTAAGAACGGAATACCGTAGGTTTGAGTCGAAAATTGTCTAGAAATGGAAAGGACTATTGTAGAATCGATCTAATGAATCTAGAGAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATCGTGAGAAATCGGTCCAGGAATACTGTAGCTAGGTTCTGCAGAGTTACTGTATCTAGGGACTACTGTAGAATCGATGTGTGTGTGTATGAAAATGGGCCAAAAATCGATCCAGGATTACTGTAGCTAGGTTCTGCAGGATTACTGTACTTGAGGACTACTATAGACGCGATCTGAGCAATCAATA</canonical>
            <polymorphic>GATCTTTGGCTGGTTGTTAGAGTGGATAGGGGCTTGTCGGCCGATACAGCAGCCGAGTTGTATATGAAGTTAGTCATTTAAATAGCCAAAAATAGCCCTAAAATCGAGACAAATCCACCCAGGATTACTGTAGCTAGGTATTCTAGGGATACTGTAGGTGAAAGCCACGGATAGGACACTCAGGGTTACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGAGACTGATTGACTCAGGATTACTGTAGCTAGCTATCCTAGGGATACTGTAAGTACGGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAYCCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGATGAATCTGGAAAGAAGGTAACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGCGAAATCCACCCAGGATTACTGTAGCTAGCTATCCTAGGGTTACTGTAAGAACGGAATACCGTAGGTTTGAGTCGAAAATTGTCTAGAAATGGAAAGGACTATTGTAGAATCGATCTAATGAATCTAGAGAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATCGTGAGAAATCGGTCCAGGAATACTGTAGCTAGGTTCTGCAGAGTTACTGTATCTAGGGACTACTGTAGAATCGATGTGTGTGTGTATGAAAATGGGCCAAAAATCGATCCAGGATTACTGTAGCTAGGTTCTGCAGGATTACTGTACTTGAGGACTACTATAGACGCGATCTGAGCAATCAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACCGGT</site>
                <isoschizomers>
                    <enzyme>AgeI</enzyme>
                    <enzyme>AsiAI</enzyme>
                    <enzyme>BshTI</enzyme>
                    <enzyme>CspAI</enzyme>
                    <enzyme>PinAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTGAAAATCGACTAGAAATG</pcr_primer_p1>
		<pcr_primer_p2>AGTAGTCCCTAGGTACAGTAATCCT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACT</canonical_amplicon>
		<polymorphic_amplicon>AAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAYCCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23729</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>110415</contig_pos>
        <strand>+</strand>
        <context>YCCGGTCCAG[A/G]ATTACTGTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAACCGGTCCAG</left_flank>
        <right_flank>ATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTTGTTAGAGTGGATAGGGGCTTGTCGGCCGATACAGCAGCCGAGTTGTATATGAAGTTAGTCATTTAAATAGCCAAAAATAGCCCTAAAATCGAGACAAATCCACCCAGGATTACTGTAGCTAGGTATTCTAGGGATACTGTAGGTGAAAGCCACGGATAGGACACTCAGGGTTACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGAGACTGATTGACTCAGGATTACTGTAGCTAGCTATCCTAGGGATACTGTAAGTACGGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGATGAATCTGGAAAGAAGGTAACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGCGAAATCCACCCAGGATTACTGTAGCTAGCTATCCTAGGGTTACTGTAAGAACGGAATACCGTAGGTTTGAGTCGAAAATTGTCTAGAAATGGAAAGGACTATTGTAGAATCGATCTAATGAATCTAGAGAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATCGTGAGAAATCGGTCCAGGAATACTGTAGCTAGGTTCTGCAGAGTTACTGTATCTAGGGACTACTGTAGAATCGATGTGTGTGTGTATGAAAATGGGCCAAAAATCGATCCAGGATTACTGTAGCTAGGTTCTGCAGGATTACTGTACTTGAGGACTACTATAGACGCGATCTGAGCAATCAATAAAGCCAATGG</canonical>
            <polymorphic>TGGTTGTTAGAGTGGATAGGGGCTTGTCGGCCGATACAGCAGCCGAGTTGTATATGAAGTTAGTCATTTAAATAGCCAAAAATAGCCCTAAAATCGAGACAAATCCACCCAGGATTACTGTAGCTAGGTATTCTAGGGATACTGTAGGTGAAAGCCACGGATAGGACACTCAGGGTTACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGAGACTGATTGACTCAGGATTACTGTAGCTAGCTATCCTAGGGATACTGTAAGTACGGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAACCGGTCCAGRATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGATGAATCTGGAAAGAAGGTAACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGCGAAATCCACCCAGGATTACTGTAGCTAGCTATCCTAGGGTTACTGTAAGAACGGAATACCGTAGGTTTGAGTCGAAAATTGTCTAGAAATGGAAAGGACTATTGTAGAATCGATCTAATGAATCTAGAGAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATCGTGAGAAATCGGTCCAGGAATACTGTAGCTAGGTTCTGCAGAGTTACTGTATCTAGGGACTACTGTAGAATCGATGTGTGTGTGTATGAAAATGGGCCAAAAATCGATCCAGGATTACTGTAGCTAGGTTCTGCAGGATTACTGTACTTGAGGACTACTATAGACGCGATCTGAGCAATCAATAAAGCCAATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>194 164 151 150 95 87 71 47 41</canonical_bands>
                <polymorphic_bands>194 164 158 151 150 95 47 41</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>499 289 203 9</canonical_bands>
                <polymorphic_bands>508 289 203</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTGATAATGTAGGTAAGGATTACTG</pcr_primer_p1>
		<pcr_primer_p2>TCGTGTCTCATATCTAGCGTAA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGATGAATCTGGAAAGAAGGTAACTGTAGGTACGGATTACGCTAGATATGAGACACGA</canonical_amplicon>
		<polymorphic_amplicon>AGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAACCGGTCCAGRATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGATGAATCTGGAAAGAAGGTAACTGTAGGTACGGATTACGCTAGATATGAGACACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23730</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>110478</contig_pos>
        <strand>+</strand>
        <context>CCGATCTGAT[A/G]AATCTGGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGAT</left_flank>
        <right_flank>AATCTGGAAAGAAGGTAACTGTAGGTACGGATTACGCTAGATATGAGACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATTTAAATAGCCAAAAATAGCCCTAAAATCGAGACAAATCCACCCAGGATTACTGTAGCTAGGTATTCTAGGGATACTGTAGGTGAAAGCCACGGATAGGACACTCAGGGTTACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGAGACTGATTGACTCAGGATTACTGTAGCTAGCTATCCTAGGGATACTGTAAGTACGGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGATGAATCTGGAAAGAAGGTAACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGCGAAATCCACCCAGGATTACTGTAGCTAGCTATCCTAGGGTTACTGTAAGAACGGAATACCGTAGGTTTGAGTCGAAAATTGTCTAGAAATGGAAAGGACTATTGTAGAATCGATCTAATGAATCTAGAGAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATCGTGAGAAATCGGTCCAGGAATACTGTAGCTAGGTTCTGCAGAGTTACTGTATCTAGGGACTACTGTAGAATCGATGTGTGTGTGTATGAAAATGGGCCAAAAATCGATCCAGGATTACTGTAGCTAGGTTCTGCAGGATTACTGTACTTGAGGACTACTATAGACGCGATCTGAGCAATCAATAAAGCCAATGGGTTACTGTAGACACGGTTGTTGTCGAGGTTGGTCATGAAAAATCGCTGAAAACCTTTTTAAAA</canonical>
            <polymorphic>TCATTTAAATAGCCAAAAATAGCCCTAAAATCGAGACAAATCCACCCAGGATTACTGTAGCTAGGTATTCTAGGGATACTGTAGGTGAAAGCCACGGATAGGACACTCAGGGTTACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGAGACTGATTGACTCAGGATTACTGTAGCTAGCTATCCTAGGGATACTGTAAGTACGGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGATRAATCTGGAAAGAAGGTAACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGCGAAATCCACCCAGGATTACTGTAGCTAGCTATCCTAGGGTTACTGTAAGAACGGAATACCGTAGGTTTGAGTCGAAAATTGTCTAGAAATGGAAAGGACTATTGTAGAATCGATCTAATGAATCTAGAGAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATCGTGAGAAATCGGTCCAGGAATACTGTAGCTAGGTTCTGCAGAGTTACTGTATCTAGGGACTACTGTAGAATCGATGTGTGTGTGTATGAAAATGGGCCAAAAATCGATCCAGGATTACTGTAGCTAGGTTCTGCAGGATTACTGTACTTGAGGACTACTATAGACGCGATCTGAGCAATCAATAAAGCCAATGGGTTACTGTAGACACGGTTGTTGTCGAGGTTGGTCATGAAAAATCGCTGAAAACCTTTTTAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>189 178 164 158 141 119 38 13</canonical_bands>
                <polymorphic_bands>299 189 178 164 119 38 13</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>342 189 179 158 119 13</canonical_bands>
                <polymorphic_bands>342 337 189 119 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTGTAATTGGTTTCTGAAGGAT</pcr_primer_p1>
		<pcr_primer_p2>GATCGATTCTACAATAGTCCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGATGAATCTGGAAAGAAGGTAACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGCGAAATCCACCCAGGATTACTGTAGCTAGCTATCCTAGGGTTACTGTAAGAACGGAATACCGTAGGTTTGAGTCGAAAATTGTCTAGAAATGGAAAGGACTATTGTAGAATCGATC</canonical_amplicon>
		<polymorphic_amplicon>ACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGATRAATCTGGAAAGAAGGTAACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGCGAAATCCACCCAGGATTACTGTAGCTAGCTATCCTAGGGTTACTGTAAGAACGGAATACCGTAGGTTTGAGTCGAAAATTGTCTAGAAATGGAAAGGACTATTGTAGAATCGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23731</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>110551</contig_pos>
        <strand>+</strand>
        <context>GAAAGTGAGC[A/G]AAATCCACCC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGC</left_flank>
        <right_flank>AAATCCACCCAGGATTACTGTAGCTAGCTATCCTAGGGTTACTGTAAGAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATACTGTAGGTGAAAGCCACGGATAGGACACTCAGGGTTACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGAGACTGATTGACTCAGGATTACTGTAGCTAGCTATCCTAGGGATACTGTAAGTACGGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGATGAATCTGGAAAGAAGGTAACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGCGAAATCCACCCAGGATTACTGTAGCTAGCTATCCTAGGGTTACTGTAAGAACGGAATACCGTAGGTTTGAGTCGAAAATTGTCTAGAAATGGAAAGGACTATTGTAGAATCGATCTAATGAATCTAGAGAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATCGTGAGAAATCGGTCCAGGAATACTGTAGCTAGGTTCTGCAGAGTTACTGTATCTAGGGACTACTGTAGAATCGATGTGTGTGTGTATGAAAATGGGCCAAAAATCGATCCAGGATTACTGTAGCTAGGTTCTGCAGGATTACTGTACTTGAGGACTACTATAGACGCGATCTGAGCAATCAATAAAGCCAATGGGTTACTGTAGACACGGTTGTTGTCGAGGTTGGTCATGAAAAATCGCTGAAAACCTTTTTAAAAAATGACCTGAAAAATGACCTGGAGGCGAGAAAAATACACCCAGGATTACTGTAATTGGTTTCTGAAGGATTAC</canonical>
            <polymorphic>GGATACTGTAGGTGAAAGCCACGGATAGGACACTCAGGGTTACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGAGACTGATTGACTCAGGATTACTGTAGCTAGCTATCCTAGGGATACTGTAAGTACGGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGATGAATCTGGAAAGAAGGTAACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGCRAAATCCACCCAGGATTACTGTAGCTAGCTATCCTAGGGTTACTGTAAGAACGGAATACCGTAGGTTTGAGTCGAAAATTGTCTAGAAATGGAAAGGACTATTGTAGAATCGATCTAATGAATCTAGAGAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATCGTGAGAAATCGGTCCAGGAATACTGTAGCTAGGTTCTGCAGAGTTACTGTATCTAGGGACTACTGTAGAATCGATGTGTGTGTGTATGAAAATGGGCCAAAAATCGATCCAGGATTACTGTAGCTAGGTTCTGCAGGATTACTGTACTTGAGGACTACTATAGACGCGATCTGAGCAATCAATAAAGCCAATGGGTTACTGTAGACACGGTTGTTGTCGAGGTTGGTCATGAAAAATCGCTGAAAACCTTTTTAAAAAATGACCTGAAAAATGACCTGGAGGCGAGAAAAATACACCCAGGATTACTGTAATTGGTTTCTGAAGGATTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTGTAATTGGTTTCTGAAGGAT</pcr_primer_p1>
		<pcr_primer_p2>GATCGATTCTACAATAGTCCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGATGAATCTGGAAAGAAGGTAACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGCGAAATCCACCCAGGATTACTGTAGCTAGCTATCCTAGGGTTACTGTAAGAACGGAATACCGTAGGTTTGAGTCGAAAATTGTCTAGAAATGGAAAGGACTATTGTAGAATCGATC</canonical_amplicon>
		<polymorphic_amplicon>ACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGATGAATCTGGAAAGAAGGTAACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGCRAAATCCACCCAGGATTACTGTAGCTAGCTATCCTAGGGTTACTGTAAGAACGGAATACCGTAGGTTTGAGTCGAAAATTGTCTAGAAATGGAAAGGACTATTGTAGAATCGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23732</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>110600</contig_pos>
        <strand>+</strand>
        <context>TTACTGTAAG[A/T]ACGGAATACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGAAATCCACCCAGGATTACTGTAGCTAGCTATCCTAGGGTTACTGTAAG</left_flank>
        <right_flank>ACGGAATACCGTAGGTTTGAGTCGAAAATTGTCTAGAAATGGAAAGGACT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGAGACTGATTGACTCAGGATTACTGTAGCTAGCTATCCTAGGGATACTGTAAGTACGGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGATGAATCTGGAAAGAAGGTAACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGCGAAATCCACCCAGGATTACTGTAGCTAGCTATCCTAGGGTTACTGTAAGAACGGAATACCGTAGGTTTGAGTCGAAAATTGTCTAGAAATGGAAAGGACTATTGTAGAATCGATCTAATGAATCTAGAGAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATCGTGAGAAATCGGTCCAGGAATACTGTAGCTAGGTTCTGCAGAGTTACTGTATCTAGGGACTACTGTAGAATCGATGTGTGTGTGTATGAAAATGGGCCAAAAATCGATCCAGGATTACTGTAGCTAGGTTCTGCAGGATTACTGTACTTGAGGACTACTATAGACGCGATCTGAGCAATCAATAAAGCCAATGGGTTACTGTAGACACGGTTGTTGTCGAGGTTGGTCATGAAAAATCGCTGAAAACCTTTTTAAAAAATGACCTGAAAAATGACCTGGAGGCGAGAAAAATACACCCAGGATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGATAAATCTGGAAAGAAGG</canonical>
            <polymorphic>TACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGAGACTGATTGACTCAGGATTACTGTAGCTAGCTATCCTAGGGATACTGTAAGTACGGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGATGAATCTGGAAAGAAGGTAACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGCGAAATCCACCCAGGATTACTGTAGCTAGCTATCCTAGGGTTACTGTAAGWACGGAATACCGTAGGTTTGAGTCGAAAATTGTCTAGAAATGGAAAGGACTATTGTAGAATCGATCTAATGAATCTAGAGAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATCGTGAGAAATCGGTCCAGGAATACTGTAGCTAGGTTCTGCAGAGTTACTGTATCTAGGGACTACTGTAGAATCGATGTGTGTGTGTATGAAAATGGGCCAAAAATCGATCCAGGATTACTGTAGCTAGGTTCTGCAGGATTACTGTACTTGAGGACTACTATAGACGCGATCTGAGCAATCAATAAAGCCAATGGGTTACTGTAGACACGGTTGTTGTCGAGGTTGGTCATGAAAAATCGCTGAAAACCTTTTTAAAAAATGACCTGAAAAATGACCTGGAGGCGAGAAAAATACACCCAGGATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGATAAATCTGGAAAGAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTACGCTAGATATGAGACAC</pcr_primer_p1>
		<pcr_primer_p2>ACCTAGCTACAGTATTCCTGGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGAGACTGATTGACTCAGGATTACTGTAGCTAGCTATCCTAGGGATACTGTAAGTACGGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGATGAATCTGGAAAGAAGGTAACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGCGAAATCCACCCAGGATTACTGTAGCTAGCTATCCTAGGGTTACTGTAAGAACGGAATACCGTAGGTTTGAGTCGAAAATTGTCTAGAAATGGAAAGGACTATTGTAGAATCGATCTAATGAATCTAGAGAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATCGTGAGAAATCGGTCCAGGAATACTGTAGCTAGGT</canonical_amplicon>
		<polymorphic_amplicon>GGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGAGACTGATTGACTCAGGATTACTGTAGCTAGCTATCCTAGGGATACTGTAAGTACGGAATACCGTAGATTTAAGTTGAAAATCGACTAGAAATGGAGAAAATAGCGTCAGTGTTACTGTAGCTATGTATTCTAGTGATAATGTAGGTAAGGATTACTGTAGATCCGATCTAATGAATCTAGAAAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATAAATCGTCAAAAAAGAGCCCAAAACCCGTGGAAAACCGGTCCAGAATTACTGTAATTGGTTTCTGAAGGATTACTGTACCTAGGGACTACTGTAGGTCCGATCTGATGAATCTGGAAAGAAGGTAACTGTAGGTACGGATTACGCTAGATATGAGACACGAAATCGACTAGAAAGTGAGCGAAATCCACCCAGGATTACTGTAGCTAGCTATCCTAGGGTTACTGTAAGWACGGAATACCGTAGGTTTGAGTCGAAAATTGTCTAGAAATGGAAAGGACTATTGTAGAATCGATCTAATGAATCTAGAGAGCTCATGGGTTACTGTATGTGTATGAAAATGGCCAAAAATCGTGAGAAATCGGTCCAGGAATACTGTAGCTAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23733</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>112893</contig_pos>
        <strand></strand>
        <context>ttttctgata[C/T]tttcacgtcg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGGGCTAGATTTGACGTCTTCTAAATCCTTAAAACTCAGTTTTCTGATA</left_flank>
        <right_flank>TTTCACGTCGTTAGATCTCTTTTCCATGCGATTTCTGTCATTTTGATACC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGATTCTGAATCCAGAAGACGTCTAAATCCCAAATCTCACCAAACTAGGTCGATATGGGTATCAAAATGACGGGAATCGCAAGAGGAAAAAGGTTGACGACGTGAAAATTTCTGAAAATGACGTTCTGAGGATTCTGAAGACGCCAAACTTCTTAATTTCATCAAAGTTGGACAATATGGGTATCAAAATGTCAGAAATTACATGAAAAAGAAGGTTAACGATGTGGAAAATAGGTTTTCAGTCATTTGAACAAAACTTTAGCCAAATTTTATAACTTTCAGACCGCGTAAATCCATCACTCTACCCGCTGAATCCATGGAAACCGGATGATTCAAAAGGTGGACCGCCCGTTTTTCAATTACAATCGTTTGGGGACCAACCGAGTCATCCACACACAACACTCACCAATTTGCTCTATGTCTATCCAATGTCATTGAAGTGAGTGGGCGGGGCTAGATTTGACGTCTTCTAAATCCTTAAAACTCAGTTTTCTGATACTTTCACGTCGTTAGATCTCTTTTCCATGCGATTTCTGTCATTTTGATACCCATATTGCCCTATTTTGAAGGATGTGGAGTTTTGACGTCTTCTAAATTCTGAATTCAGTTGAAACTCAAAATTCTTCAAACTAGCTCGATATGGGTATAAAAATGACGAGAATCACACGAGAAATACGATTGACGACGTGAAAATTTCAGAATGCTGCGTTTTCAGGATTTAGAAGACGTCAAAGATACTGAATTTGACGTTTTCTAGATCCTTCAAATTCAATTTTCTGAAATTTTCACGTCGTCAACCTTCTTTCCCATGTAGTTTCCGACGTTTTGATAACCATATTGCCCAGGTTTGAAGAATTTTGAAGTTGAGGTGAATTCTGAATCCAGAAGACGTCAAAATCTAGAATCTCACCAAACCAGGGCAATATGGGTATCAAAATGACGGAAATTACATGGGAAAGAGAGTTAACGATGTGAATTTGTGTGAAAATTGGCTGAATT</canonical>
            <polymorphic>TGGATTCTGAATCCAGAAGACGTCTAAATCCCAAATCTCACCAAACTAGGTCGATATGGGTATCAAAATGACGGGAATCGCAAGAGGAAAAAGGTTGACGACGTGAAAATTTCTGAAAATGACGTTCTGAGGATTCTGAAGACGCCAAACTTCTTAATTTCATCAAAGTTGGACAATATGGGTATCAAAATGTCAGAAATTACATGAAAAAGAAGGTTAACGATGTGGAAAATAGGTTTTCAGTCATTTGAACAAAACTTTAGCCAAATTTTATAACTTTCAGACCGCGTAAATCCATCACTCTACCCGCTGAATCCATGGAAACCGGATGATTCAAAAGGTGGACCGCCCGTTTTTCAATTACAATCGTTTGGGGACCAACCGAGTCATCCACACACAACACTCACCAATTTGCTCTATGTCTATCCAATGTCATTGAAGTGAGTGGGCGGGGCTAGATTTGACGTCTTCTAAATCCTTAAAACTCAGTTTTCTGATAYTTTCACGTCGTTAGATCTCTTTTCCATGCGATTTCTGTCATTTTGATACCCATATTGCCCTATTTTGAAGGATGTGGAGTTTTGACGTCTTCTAAATTCTGAATTCAGTTGAAACTCAAAATTCTTCAAACTAGCTCGATATGGGTATAAAAATGACGAGAATCACACGAGAAATACGATTGACGACGTGAAAATTTCAGAATGCTGCGTTTTCAGGATTTAGAAGACGTCAAAGATACTGAATTTGACGTTTTCTAGATCCTTCAAATTCAATTTTCTGAAATTTTCACGTCGTCAACCTTCTTTCCCATGTAGTTTCCGACGTTTTGATAACCATATTGCCCAGGTTTGAAGAATTTTGAAGTTGAGGTGAATTCTGAATCCAGAAGACGTCAAAATCTAGAATCTCACCAAACCAGGGCAATATGGGTATCAAAATGACGGAAATTACATGGGAAAGAGAGTTAACGATGTGAATTTGTGTGAAAATTGGCTGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGCTCTATGTCTATCCAATGTC</pcr_primer_p1>
		<pcr_primer_p2>TGGGAGTCATACCTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>627</pcr_amplicon_size>
		<canonical_amplicon>TTGCTCTATGTCTATCCAATGTCATTGAAGTGAGTGGGCGGGGCTAGATTTGACGTCTTCTAAATCCTTAAAACTCAGTTTTCTGATACTTTCACGTCGTTAGATCTC</canonical_amplicon>
		<polymorphic_amplicon>TTGCTCTATGTCTATCCAATGTCATTGAAGTGAGTGGGCGGGGCTAGATTTGACGTCTTCTAAATCCTTAAAACTCAGTTTTCTGATAYTTTCACGTCGTTAGATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23734</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>113386</contig_pos>
        <strand>+</strand>
        <context>gtgaaaattg[G/T]CTGAATTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGAAATTACATGGGAAAGAGAGTTAACGATGTGAATTTGTGTGAAAATTG</left_flank>
        <right_flank>CTGAATTTTCAAAAAAGCCCACTTTTTTTTCAGGTATGACTCCCAAAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGATACTTTCACGTCGTTAGATCTCTTTTCCATGCGATTTCTGTCATTTTGATACCCATATTGCCCTATTTTGAAGGATGTGGAGTTTTGACGTCTTCTAAATTCTGAATTCAGTTGAAACTCAAAATTCTTCAAACTAGCTCGATATGGGTATAAAAATGACGAGAATCACACGAGAAATACGATTGACGACGTGAAAATTTCAGAATGCTGCGTTTTCAGGATTTAGAAGACGTCAAAGATACTGAATTTGACGTTTTCTAGATCCTTCAAATTCAATTTTCTGAAATTTTCACGTCGTCAACCTTCTTTCCCATGTAGTTTCCGACGTTTTGATAACCATATTGCCCAGGTTTGAAGAATTTTGAAGTTGAGGTGAATTCTGAATCCAGAAGACGTCAAAATCTAGAATCTCACCAAACCAGGGCAATATGGGTATCAAAATGACGGAAATTACATGGGAAAGAGAGTTAACGATGTGAATTTGTGTGAAAATTGGCTGAATTTTCAAAAAAGCCCACTTTTTTTTCAGGTATGACTCCCAAAAAGCGTTCTCCAAAGCGCGTAACATCTCGTGCAACGTCCGTTTCGTCCGTGGAGACCAAGCGATACCCGAAAAAGCAATGGTGGACCGAATGTCGCCGTCGGGACCCTACTGTATCTCCTCCACGTGTTCCATCCAACACCATCAACAGAATCCAGTATTCGGAGAGGAAATGAAGACTCAGCTTCCCCTGAATTTGACGACTTCTGACCACTTGCTCTTCTCGTTTTCCCACATTTCAGTGGCGGGAAATTCGAATTTGAAGTCTTCGGAATCCACGGAGACGCCCATCGGATACTCGTGGCTTCCGTTGGTTTGGAAGAAGGATCGACTGATTATGGATAATGATGAACAGGAATTCGCATTGCCGGTGGCTTGTGATCTACCCGCCAATTATTATCGATCCAAACCAACTGGAATGGCTGGCAAAGGGGTTGGTTTTGGCTGAAAATCGT</canonical>
            <polymorphic>CTGATACTTTCACGTCGTTAGATCTCTTTTCCATGCGATTTCTGTCATTTTGATACCCATATTGCCCTATTTTGAAGGATGTGGAGTTTTGACGTCTTCTAAATTCTGAATTCAGTTGAAACTCAAAATTCTTCAAACTAGCTCGATATGGGTATAAAAATGACGAGAATCACACGAGAAATACGATTGACGACGTGAAAATTTCAGAATGCTGCGTTTTCAGGATTTAGAAGACGTCAAAGATACTGAATTTGACGTTTTCTAGATCCTTCAAATTCAATTTTCTGAAATTTTCACGTCGTCAACCTTCTTTCCCATGTAGTTTCCGACGTTTTGATAACCATATTGCCCAGGTTTGAAGAATTTTGAAGTTGAGGTGAATTCTGAATCCAGAAGACGTCAAAATCTAGAATCTCACCAAACCAGGGCAATATGGGTATCAAAATGACGGAAATTACATGGGAAAGAGAGTTAACGATGTGAATTTGTGTGAAAATTGKCTGAATTTTCAAAAAAGCCCACTTTTTTTTCAGGTATGACTCCCAAAAAGCGTTCTCCAAAGCGCGTAACATCTCGTGCAACGTCCGTTTCGTCCGTGGAGACCAAGCGATACCCGAAAAAGCAATGGTGGACCGAATGTCGCCGTCGGGACCCTACTGTATCTCCTCCACGTGTTCCATCCAACACCATCAACAGAATCCAGTATTCGGAGAGGAAATGAAGACTCAGCTTCCCCTGAATTTGACGACTTCTGACCACTTGCTCTTCTCGTTTTCCCACATTTCAGTGGCGGGAAATTCGAATTTGAAGTCTTCGGAATCCACGGAGACGCCCATCGGATACTCGTGGCTTCCGTTGGTTTGGAAGAAGGATCGACTGATTATGGATAATGATGAACAGGAATTCGCATTGCCGGTGGCTTGTGATCTACCCGCCAATTATTATCGATCCAAACCAACTGGAATGGCTGGCAAAGGGGTTGGTTTTGGCTGAAAATCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>359 212 141 120 70 48 22 17 11</canonical_bands>
                <polymorphic_bands>376 212 141 120 70 48 22 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGCTCTATGTCTATCCAATGTC</pcr_primer_p1>
		<pcr_primer_p2>GCTTTTTGGGAGTCATACCT</pcr_primer_p2>
		<pcr_amplicon_size>633</pcr_amplicon_size>
		<canonical_amplicon>GGCTGAATTTTCAAAAAAGCCCACTTTTTTTTCAGGTATGACTCCCAAAAAGC</canonical_amplicon>
		<polymorphic_amplicon>GKCTGAATTTTCAAAAAAGCCCACTTTTTTTTCAGGTATGACTCCCAAAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23735</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>218329</contig_pos>
        <strand>+</strand>
        <context>TTTATCCTTC[C/T]TYTTTATCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCTTTTAGTGAAAAAGAGATGATGAGGCATTTCCGGGGGTTTATCCTTC</left_flank>
        <right_flank>TTTTTATCTCTTTTTTTGGCTGAAACAGTTTCATCTGAAATTTTTCAAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATTTTGGAAAAAACAATATTTCCTTCCTCAAAAAATGTCCCTTGAATTATTTTTTTTTTGAATTTTTCTGAAATAAATCTGAAAATCTAGAAATCCCTTTTTTTGTAGTTTCTGGAAATTTGGAAATTTCTAGCTACAAATAATTTATTGAGTTTGTTTTTTTCCAAAAAAGATGATAAATTTAGATTTTTCATAAAATTTCAAGCTTTTCTCAAAATCTGAAATTGTTTCAAAAAGTAAAACAACTAAAAACTCGAAAATCTCAAAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAAGAGCTCTTTTAGTGAAAAAGAGATGATGAGGCATTTCCGGGGGTTTATCCTTCCTTTTTATCTCTTTTTTTGGCTGAAACAGTTTCATCTGAAATTTTTCAAAAAAAAAAACAGAAATTTTGGAATATCTGAAAATCGAAAGTTTCAATAAAACGGAAAATTTGAACAAAATCTGAAAAAAACCACTGTTTCACTACAAACTACGGAATCTCAATTTTGTTTTTAAATTCTCGCATTTTGAGCTTCATTTCGAAATTTGGAACTTGAGTCATCTGAATTTTGTTTTTCGCCTGAAAAACTTTATATTTGACTCATTTGATTTCTGATCATTTTCGGATTCTGATCACACTTTTCGAGAACATCATTTCGTGCGTTTTTTTGCTATCTCAAAGTCATTATAGGATTATCAATTTATCAGAAAAAAATTCTAAAAATTATTTTTTTGTGATAAAAAATTTTTTCCGGTAAAACGTACTTTTGATAATTTTGGAATTTTTGCAAAATTCAATTTTGATATAGACTACAAATACTACAATCCATTTTTGTGATTTTTC</canonical>
            <polymorphic>GAAATTTTGGAAAAAACAATATTTCCTTCCTCAAAAAATGTCCCTTGAATTATTTTTTTTTTGAATTTTTCTGAAATAAATCTGAAAATCTAGAAATCCCTTTTTTTGTAGTTTCTGGAAATTTGGAAATTTCTAGCTACAAATAATTTATTGAGTTTGTTTTTTTCCAAAAAAGATGATAAATTTAGATTTTTCATAAAATTTCAAGCTTTTCTCAAAATCTGAAATTGTTTCAAAAAGTAAAACAACTAAAAACTCGAAAATCTCAAAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAAGAGCTCTTTTAGTGAAAAAGAGATGATGAGGCATTTCCGGGGGTTTATCCTTCYTTTTTATCTCTTTTTTTGGCTGAAACAGTTTCATCTGAAATTTTTCAAAAAAAAAAACAGAAATTTTGGAATATCTGAAAATCGAAAGTTTCAATAAAACGGAAAATTTGAACAAAATCTGAAAAAAACCACTGTTTCACTACAAACTACGGAATCTCAATTTTGTTTTTAAATTCTCGCATTTTGAGCTTCATTTCGAAATTTGGAACTTGAGTCATCTGAATTTTGTTTTTCGCCTGAAAAACTTTATATTTGACTCATTTGATTTCTGATCATTTTCGGATTCTGATCACACTTTTCGAGAACATCATTTCGTGCGTTTTTTTGCTATCTCAAAGTCATTATAGGATTATCAATTTATCAGAAAAAAATTCTAAAAATTATTTTTTTGTGATAAAAAATTTTTTCCGGTAAAACGTACTTTTGATAATTTTGGAATTTTTGCAAAATTCAATTTTGATATAGACTACAAATACTACAATCCATTTTTGTGATTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAAAGTAAAACAACTAAAAACTC</pcr_primer_p1>
		<pcr_primer_p2>CAGATATTCCAAAATTTCTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>345</pcr_amplicon_size>
		<canonical_amplicon>TCAAAAAGTAAAACAACTAAAAACTCGAAAATCTCAAAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAAGAGCTCTTTTAGTGAAAAAGAGATGATGAGGCATTTCCGGGGGTTTATCCTTCCTTTTTATCTCTTTTTTTGGCTGAAACAGTTTCATCTGAAATTTTTCAAAAAAAAAAACAGAAATTTTGGAATATCTG</canonical_amplicon>
		<polymorphic_amplicon>TCAAAAAGTAAAACAACTAAAAACTCGAAAATCTCAAAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAAGAGCTCTTTTAGTGAAAAAGAGATGATGAGGCATTTCCGGGGGTTTATCCTTCYTTTTTATCTCTTTTTTTGGCTGAAACAGTTTCATCTGAAATTTTTCAAAAAAAAAAACAGAAATTTTGGAATATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23736</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>218331</contig_pos>
        <strand>+</strand>
        <context>TATCCTTCYT[C/T]TTTATCTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTTAGTGAAAAAGAGATGATGAGGCATTTCCGGGGGTTTATCCTTCCT</left_flank>
        <right_flank>TTTATCTCTTTTTTTGGCTGAAACAGTTTCATCTGAAATTTTTCAAAAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTGGAAAAAACAATATTTCCTTCCTCAAAAAATGTCCCTTGAATTATTTTTTTTTTGAATTTTTCTGAAATAAATCTGAAAATCTAGAAATCCCTTTTTTTGTAGTTTCTGGAAATTTGGAAATTTCTAGCTACAAATAATTTATTGAGTTTGTTTTTTTCCAAAAAAGATGATAAATTTAGATTTTTCATAAAATTTCAAGCTTTTCTCAAAATCTGAAATTGTTTCAAAAAGTAAAACAACTAAAAACTCGAAAATCTCAAAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAAGAGCTCTTTTAGTGAAAAAGAGATGATGAGGCATTTCCGGGGGTTTATCCTTCCTTTTTATCTCTTTTTTTGGCTGAAACAGTTTCATCTGAAATTTTTCAAAAAAAAAAACAGAAATTTTGGAATATCTGAAAATCGAAAGTTTCAATAAAACGGAAAATTTGAACAAAATCTGAAAAAAACCACTGTTTCACTACAAACTACGGAATCTCAATTTTGTTTTTAAATTCTCGCATTTTGAGCTTCATTTCGAAATTTGGAACTTGAGTCATCTGAATTTTGTTTTTCGCCTGAAAAACTTTATATTTGACTCATTTGATTTCTGATCATTTTCGGATTCTGATCACACTTTTCGAGAACATCATTTCGTGCGTTTTTTTGCTATCTCAAAGTCATTATAGGATTATCAATTTATCAGAAAAAAATTCTAAAAATTATTTTTTTGTGATAAAAAATTTTTTCCGGTAAAACGTACTTTTGATAATTTTGGAATTTTTGCAAAATTCAATTTTGATATAGACTACAAATACTACAATCCATTTTTGTGATTTTTCGA</canonical>
            <polymorphic>AATTTTGGAAAAAACAATATTTCCTTCCTCAAAAAATGTCCCTTGAATTATTTTTTTTTTGAATTTTTCTGAAATAAATCTGAAAATCTAGAAATCCCTTTTTTTGTAGTTTCTGGAAATTTGGAAATTTCTAGCTACAAATAATTTATTGAGTTTGTTTTTTTCCAAAAAAGATGATAAATTTAGATTTTTCATAAAATTTCAAGCTTTTCTCAAAATCTGAAATTGTTTCAAAAAGTAAAACAACTAAAAACTCGAAAATCTCAAAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAAGAGCTCTTTTAGTGAAAAAGAGATGATGAGGCATTTCCGGGGGTTTATCCTTCCTYTTTATCTCTTTTTTTGGCTGAAACAGTTTCATCTGAAATTTTTCAAAAAAAAAAACAGAAATTTTGGAATATCTGAAAATCGAAAGTTTCAATAAAACGGAAAATTTGAACAAAATCTGAAAAAAACCACTGTTTCACTACAAACTACGGAATCTCAATTTTGTTTTTAAATTCTCGCATTTTGAGCTTCATTTCGAAATTTGGAACTTGAGTCATCTGAATTTTGTTTTTCGCCTGAAAAACTTTATATTTGACTCATTTGATTTCTGATCATTTTCGGATTCTGATCACACTTTTCGAGAACATCATTTCGTGCGTTTTTTTGCTATCTCAAAGTCATTATAGGATTATCAATTTATCAGAAAAAAATTCTAAAAATTATTTTTTTGTGATAAAAAATTTTTTCCGGTAAAACGTACTTTTGATAATTTTGGAATTTTTGCAAAATTCAATTTTGATATAGACTACAAATACTACAATCCATTTTTGTGATTTTTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAAAGTAAAACAACTAAAAACTC</pcr_primer_p1>
		<pcr_primer_p2>CAGATATTCCAAAATTTCTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>345</pcr_amplicon_size>
		<canonical_amplicon>TCAAAAAGTAAAACAACTAAAAACTCGAAAATCTCAAAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAAGAGCTCTTTTAGTGAAAAAGAGATGATGAGGCATTTCCGGGGGTTTATCCTTCCTTTTTATCTCTTTTTTTGGCTGAAACAGTTTCATCTGAAATTTTTCAAAAAAAAAAACAGAAATTTTGGAATATCTG</canonical_amplicon>
		<polymorphic_amplicon>TCAAAAAGTAAAACAACTAAAAACTCGAAAATCTCAAAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAAGAGCTCTTTTAGTGAAAAAGAGATGATGAGGCATTTCCGGGGGTTTATCCTTCCTYTTTATCTCTTTTTTTGGCTGAAACAGTTTCATCTGAAATTTTTCAAAAAAAAAAACAGAAATTTTGGAATATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23737</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>218361</contig_pos>
        <strand>+</strand>
        <context>GAAACAGTTT[C/T]ATCTGAAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCGGGGGTTTATCCTTCCTTTTTATCTCTTTTTTTGGCTGAAACAGTTT</left_flank>
        <right_flank>ATCTGAAATTTTTCAAAAAAAAAAACAGAAATTTTGGAATATCTGAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAATGTCCCTTGAATTATTTTTTTTTTGAATTTTTCTGAAATAAATCTGAAAATCTAGAAATCCCTTTTTTTGTAGTTTCTGGAAATTTGGAAATTTCTAGCTACAAATAATTTATTGAGTTTGTTTTTTTCCAAAAAAGATGATAAATTTAGATTTTTCATAAAATTTCAAGCTTTTCTCAAAATCTGAAATTGTTTCAAAAAGTAAAACAACTAAAAACTCGAAAATCTCAAAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAAGAGCTCTTTTAGTGAAAAAGAGATGATGAGGCATTTCCGGGGGTTTATCCTTCCTTTTTATCTCTTTTTTTGGCTGAAACAGTTTCATCTGAAATTTTTCAAAAAAAAAAACAGAAATTTTGGAATATCTGAAAATCGAAAGTTTCAATAAAACGGAAAATTTGAACAAAATCTGAAAAAAACCACTGTTTCACTACAAACTACGGAATCTCAATTTTGTTTTTAAATTCTCGCATTTTGAGCTTCATTTCGAAATTTGGAACTTGAGTCATCTGAATTTTGTTTTTCGCCTGAAAAACTTTATATTTGACTCATTTGATTTCTGATCATTTTCGGATTCTGATCACACTTTTCGAGAACATCATTTCGTGCGTTTTTTTGCTATCTCAAAGTCATTATAGGATTATCAATTTATCAGAAAAAAATTCTAAAAATTATTTTTTTGTGATAAAAAATTTTTTCCGGTAAAACGTACTTTTGATAATTTTGGAATTTTTGCAAAATTCAATTTTGATATAGACTACAAATACTACAATCCATTTTTGTGATTTTTCGAACTTTGGAAAAAACATCTTTTTTAATTTTC</canonical>
            <polymorphic>AAAAAATGTCCCTTGAATTATTTTTTTTTTGAATTTTTCTGAAATAAATCTGAAAATCTAGAAATCCCTTTTTTTGTAGTTTCTGGAAATTTGGAAATTTCTAGCTACAAATAATTTATTGAGTTTGTTTTTTTCCAAAAAAGATGATAAATTTAGATTTTTCATAAAATTTCAAGCTTTTCTCAAAATCTGAAATTGTTTCAAAAAGTAAAACAACTAAAAACTCGAAAATCTCAAAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAAGAGCTCTTTTAGTGAAAAAGAGATGATGAGGCATTTCCGGGGGTTTATCCTTCCTTTTTATCTCTTTTTTTGGCTGAAACAGTTTYATCTGAAATTTTTCAAAAAAAAAAACAGAAATTTTGGAATATCTGAAAATCGAAAGTTTCAATAAAACGGAAAATTTGAACAAAATCTGAAAAAAACCACTGTTTCACTACAAACTACGGAATCTCAATTTTGTTTTTAAATTCTCGCATTTTGAGCTTCATTTCGAAATTTGGAACTTGAGTCATCTGAATTTTGTTTTTCGCCTGAAAAACTTTATATTTGACTCATTTGATTTCTGATCATTTTCGGATTCTGATCACACTTTTCGAGAACATCATTTCGTGCGTTTTTTTGCTATCTCAAAGTCATTATAGGATTATCAATTTATCAGAAAAAAATTCTAAAAATTATTTTTTTGTGATAAAAAATTTTTTCCGGTAAAACGTACTTTTGATAATTTTGGAATTTTTGCAAAATTCAATTTTGATATAGACTACAAATACTACAATCCATTTTTGTGATTTTTCGAACTTTGGAAAAAACATCTTTTTTAATTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTAGTGAAAAAGAGATGATG</pcr_primer_p1>
		<pcr_primer_p2>TTCGAAATGAAGCTCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTAGTGAAAAAGAGATGATGAGGCATTTCCGGGGGTTTATCCTTCCTTTTTATCTCTTTTTTTGGCTGAAACAGTTTCATCTGAAATTTTTCAAAAAAAAAAACAGAAATTTTGGAATATCTGAAAATCGAAAGTTTCAATAAAACGGAAAATTTGAACAAAATCTGAAAAAAACCACTGTTTCACTACAAACTACGGAATCTCAATTTTGTTTTTAAATTCTCGCATTTTGAGCTTCATTTCGAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTAGTGAAAAAGAGATGATGAGGCATTTCCGGGGGTTTATCCTTCCTTTTTATCTCTTTTTTTGGCTGAAACAGTTTYATCTGAAATTTTTCAAAAAAAAAAACAGAAATTTTGGAATATCTGAAAATCGAAAGTTTCAATAAAACGGAAAATTTGAACAAAATCTGAAAAAAACCACTGTTTCACTACAAACTACGGAATCTCAATTTTGTTTTTAAATTCTCGCATTTTGAGCTTCATTTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23738</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>218480</contig_pos>
        <strand>+</strand>
        <context>TACAAACTAC[A/G]GAATCTCAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAAAATTTGAACAAAATCTGAAAAAAACCACTGTTTCACTACAAACTAC</left_flank>
        <right_flank>GAATCTCAATTTTGTTTTTAAATTCTCGCATTTTGAGCTTCATTTCGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGTTTGTTTTTTTCCAAAAAAGATGATAAATTTAGATTTTTCATAAAATTTCAAGCTTTTCTCAAAATCTGAAATTGTTTCAAAAAGTAAAACAACTAAAAACTCGAAAATCTCAAAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAAGAGCTCTTTTAGTGAAAAAGAGATGATGAGGCATTTCCGGGGGTTTATCCTTCCTTTTTATCTCTTTTTTTGGCTGAAACAGTTTCATCTGAAATTTTTCAAAAAAAAAAACAGAAATTTTGGAATATCTGAAAATCGAAAGTTTCAATAAAACGGAAAATTTGAACAAAATCTGAAAAAAACCACTGTTTCACTACAAACTACGGAATCTCAATTTTGTTTTTAAATTCTCGCATTTTGAGCTTCATTTCGAAATTTGGAACTTGAGTCATCTGAATTTTGTTTTTCGCCTGAAAAACTTTATATTTGACTCATTTGATTTCTGATCATTTTCGGATTCTGATCACACTTTTCGAGAACATCATTTCGTGCGTTTTTTTGCTATCTCAAAGTCATTATAGGATTATCAATTTATCAGAAAAAAATTCTAAAAATTATTTTTTTGTGATAAAAAATTTTTTCCGGTAAAACGTACTTTTGATAATTTTGGAATTTTTGCAAAATTCAATTTTGATATAGACTACAAATACTACAATCCATTTTTGTGATTTTTCGAACTTTGGAAAAAACATCTTTTTTAATTTTCGATTTTTTTTTGGTAATTTTTGTTTAAAAATGTATAAATTCTCTAGCTCATATTAATGCTTAAAAATTCACGAATTTGCATAAATTCTGAAAATTTCGAAATAATTTTTTTTTTGGAAT</canonical>
            <polymorphic>TGAGTTTGTTTTTTTCCAAAAAAGATGATAAATTTAGATTTTTCATAAAATTTCAAGCTTTTCTCAAAATCTGAAATTGTTTCAAAAAGTAAAACAACTAAAAACTCGAAAATCTCAAAGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAAGAGCTCTTTTAGTGAAAAAGAGATGATGAGGCATTTCCGGGGGTTTATCCTTCCTTTTTATCTCTTTTTTTGGCTGAAACAGTTTCATCTGAAATTTTTCAAAAAAAAAAACAGAAATTTTGGAATATCTGAAAATCGAAAGTTTCAATAAAACGGAAAATTTGAACAAAATCTGAAAAAAACCACTGTTTCACTACAAACTACRGAATCTCAATTTTGTTTTTAAATTCTCGCATTTTGAGCTTCATTTCGAAATTTGGAACTTGAGTCATCTGAATTTTGTTTTTCGCCTGAAAAACTTTATATTTGACTCATTTGATTTCTGATCATTTTCGGATTCTGATCACACTTTTCGAGAACATCATTTCGTGCGTTTTTTTGCTATCTCAAAGTCATTATAGGATTATCAATTTATCAGAAAAAAATTCTAAAAATTATTTTTTTGTGATAAAAAATTTTTTCCGGTAAAACGTACTTTTGATAATTTTGGAATTTTTGCAAAATTCAATTTTGATATAGACTACAAATACTACAATCCATTTTTGTGATTTTTCGAACTTTGGAAAAAACATCTTTTTTAATTTTCGATTTTTTTTTGGTAATTTTTGTTTAAAAATGTATAAATTCTCTAGCTCATATTAATGCTTAAAAATTCACGAATTTGCATAAATTCTGAAAATTTCGAAATAATTTTTTTTTTGGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAATATCTGAAAATCGAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>AAATGATGTTCTCGAAAAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGAATATCTGAAAATCGAAAGTTTCAATAAAACGGAAAATTTGAACAAAATCTGAAAAAAACCACTGTTTCACTACAAACTACGGAATCTCAATTTTGTTTTTAAATTCTCGCATTTTGAGCTTCATTTCGAAATTTGGAACTTGAGTCATCTGAATTTTGTTTTTCGCCTGAAAAACTTTATATTTGACTCATTTGATTTCTGATCATTTTCGGATTCTGATCACACTTTTCGAGAACATCATTT</canonical_amplicon>
		<polymorphic_amplicon>GGAATATCTGAAAATCGAAAGTTTCAATAAAACGGAAAATTTGAACAAAATCTGAAAAAAACCACTGTTTCACTACAAACTACRGAATCTCAATTTTGTTTTTAAATTCTCGCATTTTGAGCTTCATTTCGAAATTTGGAACTTGAGTCATCTGAATTTTGTTTTTCGCCTGAAAAACTTTATATTTGACTCATTTGATTTCTGATCATTTTCGGATTCTGATCACACTTTTCGAGAACATCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23739</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>218682</contig_pos>
        <strand>+</strand>
        <context>TATAGGATTA[G/T]CAATTTATCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAACATCATTTCGTGCGTTTTTTTGCTATCTCAAAGTCATTATAGGATTA</left_flank>
        <right_flank>CAATTTATCAGAAAAAAATTCTAAAAATTATTTTTTTGTGATAAAAAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAAGAGCTCTTTTAGTGAAAAAGAGATGATGAGGCATTTCCGGGGGTTTATCCTTCCTTTTTATCTCTTTTTTTGGCTGAAACAGTTTCATCTGAAATTTTTCAAAAAAAAAAACAGAAATTTTGGAATATCTGAAAATCGAAAGTTTCAATAAAACGGAAAATTTGAACAAAATCTGAAAAAAACCACTGTTTCACTACAAACTACGGAATCTCAATTTTGTTTTTAAATTCTCGCATTTTGAGCTTCATTTCGAAATTTGGAACTTGAGTCATCTGAATTTTGTTTTTCGCCTGAAAAACTTTATATTTGACTCATTTGATTTCTGATCATTTTCGGATTCTGATCACACTTTTCGAGAACATCATTTCGTGCGTTTTTTTGCTATCTCAAAGTCATTATAGGATTATCAATTTATCAGAAAAAAATTCTAAAAATTATTTTTTTGTGATAAAAAATTTTTTCCGGTAAAACGTACTTTTGATAATTTTGGAATTTTTGCAAAATTCAATTTTGATATAGACTACAAATACTACAATCCATTTTTGTGATTTTTCGAACTTTGGAAAAAACATCTTTTTTAATTTTCGATTTTTTTTTGGTAATTTTTGTTTAAAAATGTATAAATTCTCTAGCTCATATTAATGCTTAAAAATTCACGAATTTGCATAAATTCTGAAAATTTCGAAATAATTTTTTTTTTGGAATTTTCAGAATTTTCGAATTTTAAGCTGGAAAAATCAGTGATAGTCTGTCTGAAATATTGCCGAGATTGATTTTTTTAATATTAATTTTGAAAAAAAAACTTTTTTGAAAAAAGTATTTCAAATTTTTTTTCGAATTTCTATTATTTTTCTTCAATTTTCTTCAAATTTCTCTATAATTCTATCTATTTCTTCTCAATTTTTAT</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAAGAGCTCTTTTAGTGAAAAAGAGATGATGAGGCATTTCCGGGGGTTTATCCTTCCTTTTTATCTCTTTTTTTGGCTGAAACAGTTTCATCTGAAATTTTTCAAAAAAAAAAACAGAAATTTTGGAATATCTGAAAATCGAAAGTTTCAATAAAACGGAAAATTTGAACAAAATCTGAAAAAAACCACTGTTTCACTACAAACTACGGAATCTCAATTTTGTTTTTAAATTCTCGCATTTTGAGCTTCATTTCGAAATTTGGAACTTGAGTCATCTGAATTTTGTTTTTCGCCTGAAAAACTTTATATTTGACTCATTTGATTTCTGATCATTTTCGGATTCTGATCACACTTTTCGAGAACATCATTTCGTGCGTTTTTTTGCTATCTCAAAGTCATTATAGGATTAKCAATTTATCAGAAAAAAATTCTAAAAATTATTTTTTTGTGATAAAAAATTTTTTCCGGTAAAACGTACTTTTGATAATTTTGGAATTTTTGCAAAATTCAATTTTGATATAGACTACAAATACTACAATCCATTTTTGTGATTTTTCGAACTTTGGAAAAAACATCTTTTTTAATTTTCGATTTTTTTTTGGTAATTTTTGTTTAAAAATGTATAAATTCTCTAGCTCATATTAATGCTTAAAAATTCACGAATTTGCATAAATTCTGAAAATTTCGAAATAATTTTTTTTTTGGAATTTTCAGAATTTTCGAATTTTAAGCTGGAAAAATCAGTGATAGTCTGTCTGAAATATTGCCGAGATTGATTTTTTTAATATTAATTTTGAAAAAAAAACTTTTTTGAAAAAAGTATTTCAAATTTTTTTTCGAATTTCTATTATTTTTCTTCAATTTTCTTCAAATTTCTCTATAATTCTATCTATTTCTTCTCAATTTTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGACTCATTTGATTTCTGAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATCACAAAAATGGATTGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTGACTCATTTGATTTCTGATCATTTTCGGATTCTGATCACACTTTTCGAGAACATCATTTCGTGCGTTTTTTTGCTATCTCAAAGTCATTATAGGATTATCAATTTATCAGAAAAAAATTCTAAAAATTATTTTTTTGTGATAAAAAATTTTTTCCGGTAAAACGTACTTTTGATAATTTTGGAATTTTTGCAAAATTCAATTTTGATATAGACTACAAATACTACAATCCATTTTTGTGATTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTGACTCATTTGATTTCTGATCATTTTCGGATTCTGATCACACTTTTCGAGAACATCATTTCGTGCGTTTTTTTGCTATCTCAAAGTCATTATAGGATTAKCAATTTATCAGAAAAAAATTCTAAAAATTATTTTTTTGTGATAAAAAATTTTTTCCGGTAAAACGTACTTTTGATAATTTTGGAATTTTTGCAAAATTCAATTTTGATATAGACTACAAATACTACAATCCATTTTTGTGATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23740</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>218805</contig_pos>
        <strand>+</strand>
        <context>ACTACAAATA[C/T]TACAATCCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATAATTTTGGAATTTTTGCAAAATTCAATTTTGATATAGACTACAAATA</left_flank>
        <right_flank>TACAATCCATTTTTGTGATTTTTCGAACTTTGGAAAAAACATCTTTTTTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATTTCCGGGGGTTTATCCTTCCTTTTTATCTCTTTTTTTGGCTGAAACAGTTTCATCTGAAATTTTTCAAAAAAAAAAACAGAAATTTTGGAATATCTGAAAATCGAAAGTTTCAATAAAACGGAAAATTTGAACAAAATCTGAAAAAAACCACTGTTTCACTACAAACTACGGAATCTCAATTTTGTTTTTAAATTCTCGCATTTTGAGCTTCATTTCGAAATTTGGAACTTGAGTCATCTGAATTTTGTTTTTCGCCTGAAAAACTTTATATTTGACTCATTTGATTTCTGATCATTTTCGGATTCTGATCACACTTTTCGAGAACATCATTTCGTGCGTTTTTTTGCTATCTCAAAGTCATTATAGGATTATCAATTTATCAGAAAAAAATTCTAAAAATTATTTTTTTGTGATAAAAAATTTTTTCCGGTAAAACGTACTTTTGATAATTTTGGAATTTTTGCAAAATTCAATTTTGATATAGACTACAAATACTACAATCCATTTTTGTGATTTTTCGAACTTTGGAAAAAACATCTTTTTTAATTTTCGATTTTTTTTTGGTAATTTTTGTTTAAAAATGTATAAATTCTCTAGCTCATATTAATGCTTAAAAATTCACGAATTTGCATAAATTCTGAAAATTTCGAAATAATTTTTTTTTTGGAATTTTCAGAATTTTCGAATTTTAAGCTGGAAAAATCAGTGATAGTCTGTCTGAAATATTGCCGAGATTGATTTTTTTAATATTAATTTTGAAAAAAAAACTTTTTTGAAAAAAGTATTTCAAATTTTTTTTCGAATTTCTATTATTTTTCTTCAATTTTCTTCAAATTTCTCTATAATTCTATCTATTTCTTCTCAATTTTTATATTTTTCCAGGGCATGCAATTCTAGACAACTCAAGAAGCTTCGAAAATCTGAAAACTACAAAAAATGACTTCTACAAATTCATCGATGACGTCATCGTCATCGGAATTCGACGATTACGATAC</canonical>
            <polymorphic>GCATTTCCGGGGGTTTATCCTTCCTTTTTATCTCTTTTTTTGGCTGAAACAGTTTCATCTGAAATTTTTCAAAAAAAAAAACAGAAATTTTGGAATATCTGAAAATCGAAAGTTTCAATAAAACGGAAAATTTGAACAAAATCTGAAAAAAACCACTGTTTCACTACAAACTACGGAATCTCAATTTTGTTTTTAAATTCTCGCATTTTGAGCTTCATTTCGAAATTTGGAACTTGAGTCATCTGAATTTTGTTTTTCGCCTGAAAAACTTTATATTTGACTCATTTGATTTCTGATCATTTTCGGATTCTGATCACACTTTTCGAGAACATCATTTCGTGCGTTTTTTTGCTATCTCAAAGTCATTATAGGATTATCAATTTATCAGAAAAAAATTCTAAAAATTATTTTTTTGTGATAAAAAATTTTTTCCGGTAAAACGTACTTTTGATAATTTTGGAATTTTTGCAAAATTCAATTTTGATATAGACTACAAATAYTACAATCCATTTTTGTGATTTTTCGAACTTTGGAAAAAACATCTTTTTTAATTTTCGATTTTTTTTTGGTAATTTTTGTTTAAAAATGTATAAATTCTCTAGCTCATATTAATGCTTAAAAATTCACGAATTTGCATAAATTCTGAAAATTTCGAAATAATTTTTTTTTTGGAATTTTCAGAATTTTCGAATTTTAAGCTGGAAAAATCAGTGATAGTCTGTCTGAAATATTGCCGAGATTGATTTTTTTAATATTAATTTTGAAAAAAAAACTTTTTTGAAAAAAGTATTTCAAATTTTTTTTCGAATTTCTATTATTTTTCTTCAATTTTCTTCAAATTTCTCTATAATTCTATCTATTTCTTCTCAATTTTTATATTTTTCCAGGGCATGCAATTCTAGACAACTCAAGAAGCTTCGAAAATCTGAAAACTACAAAAAATGACTTCTACAAATTCATCGATGACGTCATCGTCATCGGAATTCGACGATTACGATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTATCTCAAAGTCATTATAGGA</pcr_primer_p1>
		<pcr_primer_p2>AGCATTAATATGAGCTAGAGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>TGCTATCTCAAAGTCATTATAGGATTATCAATTTATCAGAAAAAAATTCTAAAAATTATTTTTTTGTGATAAAAAATTTTTTCCGGTAAAACGTACTTTTGATAATTTTGGAATTTTTGCAAAATTCAATTTTGATATAGACTACAAATACTACAATCCATTTTTGTGATTTTTCGAACTTTGGAAAAAACATCTTTTTTAATTTTCGATTTTTTTTTGGTAATTTTTGTTTAAAAATGTATAAATTCTCTAGCTCATATTAATGCT</canonical_amplicon>
		<polymorphic_amplicon>TGCTATCTCAAAGTCATTATAGGATTATCAATTTATCAGAAAAAAATTCTAAAAATTATTTTTTTGTGATAAAAAATTTTTTCCGGTAAAACGTACTTTTGATAATTTTGGAATTTTTGCAAAATTCAATTTTGATATAGACTACAAATAYTACAATCCATTTTTGTGATTTTTCGAACTTTGGAAAAAACATCTTTTTTAATTTTCGATTTTTTTTTGGTAATTTTTGTTTAAAAATGTATAAATTCTCTAGCTCATATTAATGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23741</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>277140</contig_pos>
        <strand>+</strand>
        <context>TTCTCACCCA[A/G]AAACCTCCTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTCTCTTTAAAATTGTTCTCTCTCTTCTTGCGAAATTGATTCTCACCCA</left_flank>
        <right_flank>AAACCTCCTAATCTAACCTATTTTCCAGAGAAGAATGCGTGAGGTCATCT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATCGCGAATAACAAGACATCTTTACGGTTTTGTACCACCTGAAAATTTAGTAAGTTAACTTTTTAGGAGGGAAACATTGCGAAATTTCTCATTTTCTGCTCTCTGTTCTTTGTCTCTTCTCTCTCGCTCTCTCGGGGCCTCCAGTTCCACCTCGCTGGCTCCCCCTGCACTGGCTTTTTGCATTCATTTCAATCCGCACTCTCCCACTGGCGCAACACTATTTCTCTAGCGAAAATTCGATCGATGAGTTGGCCCCGTCGCACTGACCGCTGCTGTGTGTTGTCCTTCTTCCCTTCGTACACAGAGCGGAGACACGCCGCCGGCGCACACACACACAGCCCGTTTTTTTGTCCTATTCTCCTCATTTTCCATTGCGTTCTTCTCCCTTCTACCATAGGAGTATTACCCCCTCTCCTCTAAGCCCGCCAATAGAATTTCGTCATTTTCCTTCTCTTTAAAATTGTTCTCTCTCTTCTTGCGAAATTGATTCTCACCCAGAAACCTCCTAATCTAACCTATTTTCCAGAGAAGAATGCGTGAGGTCATCTCCATCCACGTCGGACAAGCCGGAGTCCAAATCGGAAACGCGTGCTGGGAGCTCTACTGCCTCGAGCACGGAATCCAGCCCGATGGAACCATGCCAACCCAGTCCACCAACGAGGGCGAGTCCTTCACCACCTTCTTCTCAGACACCGGAAACGGCCGCTACGTGCCAAGATCCATCTTCGTCGATCTCGAGCCAACTGTCGTCGATGAGATTCGCACTGGAACCTACAAGAAGTTGTTCCATCCAGAGCAGATGATCACCGGAAAGGAGGACGCCGCCAACAACTACGCCCGTGGACACTACACCGTCGGAAAGGAGCTCATCGACACCGTCTTGGACAGAATCCGCCGTTTGGCTGACAACTGCAGTGGACTCCAAGGATTCTTCGTGTTCCACTCGTTCGGAGGAGGAACTGGATCCGGATTCACTTCCCTTCTCATGGAGCGTCTTT</canonical>
            <polymorphic>TCATCGCGAATAACAAGACATCTTTACGGTTTTGTACCACCTGAAAATTTAGTAAGTTAACTTTTTAGGAGGGAAACATTGCGAAATTTCTCATTTTCTGCTCTCTGTTCTTTGTCTCTTCTCTCTCGCTCTCTCGGGGCCTCCAGTTCCACCTCGCTGGCTCCCCCTGCACTGGCTTTTTGCATTCATTTCAATCCGCACTCTCCCACTGGCGCAACACTATTTCTCTAGCGAAAATTCGATCGATGAGTTGGCCCCGTCGCACTGACCGCTGCTGTGTGTTGTCCTTCTTCCCTTCGTACACAGAGCGGAGACACGCCGCCGGCGCACACACACACAGCCCGTTTTTTTGTCCTATTCTCCTCATTTTCCATTGCGTTCTTCTCCCTTCTACCATAGGAGTATTACCCCCTCTCCTCTAAGCCCGCCAATAGAATTTCGTCATTTTCCTTCTCTTTAAAATTGTTCTCTCTCTTCTTGCGAAATTGATTCTCACCCARAAACCTCCTAATCTAACCTATTTTCCAGAGAAGAATGCGTGAGGTCATCTCCATCCACGTCGGACAAGCCGGAGTCCAAATCGGAAACGCGTGCTGGGAGCTCTACTGCCTCGAGCACGGAATCCAGCCCGATGGAACCATGCCAACCCAGTCCACCAACGAGGGCGAGTCCTTCACCACCTTCTTCTCAGACACCGGAAACGGCCGCTACGTGCCAAGATCCATCTTCGTCGATCTCGAGCCAACTGTCGTCGATGAGATTCGCACTGGAACCTACAAGAAGTTGTTCCATCCAGAGCAGATGATCACCGGAAAGGAGGACGCCGCCAACAACTACGCCCGTGGACACTACACCGTCGGAAAGGAGCTCATCGACACCGTCTTGGACAGAATCCGCCGTTTGGCTGACAACTGCAGTGGACTCCAAGGATTCTTCGTGTTCCACTCGTTCGGAGGAGGAACTGGATCCGGATTCACTTCCCTTCTCATGGAGCGTCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTTCCTTCTCTTTAAAATTG</pcr_primer_p1>
		<pcr_primer_p2>TCTGAGAAGAAGGTGGTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTTTCCTTCTCTTTAAAATTGTTCTCTCTCTTCTTGCGAAATTGATTCTCACCCAGAAACCTCCTAATCTAACCTATTTTCCAGAGAAGAATGCGTGAGGTCATCTCCATCCACGTCGGACAAGCCGGAGTCCAAATCGGAAACGCGTGCTGGGAGCTCTACTGCCTCGAGCACGGAATCCAGCCCGATGGAACCATGCCAACCCAGTCCACCAACGAGGGCGAGTCCTTCACCACCTTCTTCTCAGA</canonical_amplicon>
		<polymorphic_amplicon>CATTTTCCTTCTCTTTAAAATTGTTCTCTCTCTTCTTGCGAAATTGATTCTCACCCARAAACCTCCTAATCTAACCTATTTTCCAGAGAAGAATGCGTGAGGTCATCTCCATCCACGTCGGACAAGCCGGAGTCCAAATCGGAAACGCGTGCTGGGAGCTCTACTGCCTCGAGCACGGAATCCAGCCCGATGGAACCATGCCAACCCAGTCCACCAACGAGGGCGAGTCCTTCACCACCTTCTTCTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23742</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>277627</contig_pos>
        <strand>+</strand>
        <context>CTTCCCTTCT[C/T]ATGGAGCGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGTTCCACTCGTTCGGAGGAGGAACTGGATCCGGATTCACTTCCCTTCT</left_flank>
        <right_flank>ATGGAGCGTCTTTCTGTTGACTACGGAAAGAAGTCGAAGCTCGAGTTCTC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTCTCACCCAGAAACCTCCTAATCTAACCTATTTTCCAGAGAAGAATGCGTGAGGTCATCTCCATCCACGTCGGACAAGCCGGAGTCCAAATCGGAAACGCGTGCTGGGAGCTCTACTGCCTCGAGCACGGAATCCAGCCCGATGGAACCATGCCAACCCAGTCCACCAACGAGGGCGAGTCCTTCACCACCTTCTTCTCAGACACCGGAAACGGCCGCTACGTGCCAAGATCCATCTTCGTCGATCTCGAGCCAACTGTCGTCGATGAGATTCGCACTGGAACCTACAAGAAGTTGTTCCATCCAGAGCAGATGATCACCGGAAAGGAGGACGCCGCCAACAACTACGCCCGTGGACACTACACCGTCGGAAAGGAGCTCATCGACACCGTCTTGGACAGAATCCGCCGTTTGGCTGACAACTGCAGTGGACTCCAAGGATTCTTCGTGTTCCACTCGTTCGGAGGAGGAACTGGATCCGGATTCACTTCCCTTCTCATGGAGCGTCTTTCTGTTGACTACGGAAAGAAGTCGAAGCTCGAGTTCTCGATCTACCCAGCTCCACAGGTCTCAACCGCCGTTGTTGAGCCATACAACTCCATCCTCACCACACATACCACCTTGGAGCACTCCGACTGCGCATTCATGGTTGATAACGAGGCTATCTACGATATCTGCCGCAGAAACTTGGATGTTGAACGCCCGAGCTACACCAACTTGAATAGAATTATCTCCCAGGTGAGATAGTTTTTGTCTTTTTCAATAATTTAATAATGTTTCACAGGTCGTCTCCTCCATCACCGCCTCCCTGAGATTTGACGGAGCCTTGAACGTCGACCTCAACGAGTTCCAGACCAACTTGGTGCCATACCCAAGAATTCACTTCCCACTCGCTGCCTACACTCCACTCATCTCTGCCGAGAAGGCTTACCACGAGGCGCTTTCTGTCAGCGACATCACCAACAGCTGCTTCGAGCCAGCCAACCAGATGGTCAAGT</canonical>
            <polymorphic>GATTCTCACCCAGAAACCTCCTAATCTAACCTATTTTCCAGAGAAGAATGCGTGAGGTCATCTCCATCCACGTCGGACAAGCCGGAGTCCAAATCGGAAACGCGTGCTGGGAGCTCTACTGCCTCGAGCACGGAATCCAGCCCGATGGAACCATGCCAACCCAGTCCACCAACGAGGGCGAGTCCTTCACCACCTTCTTCTCAGACACCGGAAACGGCCGCTACGTGCCAAGATCCATCTTCGTCGATCTCGAGCCAACTGTCGTCGATGAGATTCGCACTGGAACCTACAAGAAGTTGTTCCATCCAGAGCAGATGATCACCGGAAAGGAGGACGCCGCCAACAACTACGCCCGTGGACACTACACCGTCGGAAAGGAGCTCATCGACACCGTCTTGGACAGAATCCGCCGTTTGGCTGACAACTGCAGTGGACTCCAAGGATTCTTCGTGTTCCACTCGTTCGGAGGAGGAACTGGATCCGGATTCACTTCCCTTCTYATGGAGCGTCTTTCTGTTGACTACGGAAAGAAGTCGAAGCTCGAGTTCTCGATCTACCCAGCTCCACAGGTCTCAACCGCCGTTGTTGAGCCATACAACTCCATCCTCACCACACATACCACCTTGGAGCACTCCGACTGCGCATTCATGGTTGATAACGAGGCTATCTACGATATCTGCCGCAGAAACTTGGATGTTGAACGCCCGAGCTACACCAACTTGAATAGAATTATCTCCCAGGTGAGATAGTTTTTGTCTTTTTCAATAATTTAATAATGTTTCACAGGTCGTCTCCTCCATCACCGCCTCCCTGAGATTTGACGGAGCCTTGAACGTCGACCTCAACGAGTTCCAGACCAACTTGGTGCCATACCCAAGAATTCACTTCCCACTCGCTGCCTACACTCCACTCATCTCTGCCGAGAAGGCTTACCACGAGGCGCTTTCTGTCAGCGACATCACCAACAGCTGCTTCGAGCCAGCCAACCAGATGGTCAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>353 348 152 147</canonical_bands>
                <polymorphic_bands>495 353 152</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGATTCTTCGTGTTCCACT</pcr_primer_p1>
		<pcr_primer_p2>TATCGTAGATAGCCTCGTTATCA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>AGGATTCTTCGTGTTCCACTCGTTCGGAGGAGGAACTGGATCCGGATTCACTTCCCTTCTCATGGAGCGTCTTTCTGTTGACTACGGAAAGAAGTCGAAGCTCGAGTTCTCGATCTACCCAGCTCCACAGGTCTCAACCGCCGTTGTTGAGCCATACAACTCCATCCTCACCACACATACCACCTTGGAGCACTCCGACTGCGCATTCATGGTTGATAACGAGGCTATCTACGATA</canonical_amplicon>
		<polymorphic_amplicon>AGGATTCTTCGTGTTCCACTCGTTCGGAGGAGGAACTGGATCCGGATTCACTTCCCTTCTYATGGAGCGTCTTTCTGTTGACTACGGAAAGAAGTCGAAGCTCGAGTTCTCGATCTACCCAGCTCCACAGGTCTCAACCGCCGTTGTTGAGCCATACAACTCCATCCTCACCACACATACCACCTTGGAGCACTCCGACTGCGCATTCATGGTTGATAACGAGGCTATCTACGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23743</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>325335</contig_pos>
        <strand></strand>
        <context>gtagtccaag[C/A]ytcagtaaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATTTCAAGTTTTACTGAGGCTTAGGATCATTTTGTAGTTTGTAGTCCAAG</left_flank>
        <right_flank>CTCAGTAAAAAGTAATCGCGCTATTTTTACTGAGGGTTAGAGACTATAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTCTTCAATCTTCAAAACTAACCGAGTTACAGTTCTTTGAAACTTTACTGAGGCTTAGAAGCAATTCGTAGTTTGTAGTCGCACTATTTTTTTTTTGGAAATTTGATTTTCCGAATTTCTAATTTATAAAACACTATTTTTAAAGAAATTCCAATTCAATAACTTTCAAAATTAAAAATTAGACTTTTACTGAGGCTTAGAACGTTTTTATAGTTTGTGGTCTAAGCCTCAGCAAATTGTAATAGCGCTAATTCTACAATTAAAATTCGAATTTCACTTTTTTTCAAAATTTTATTTTTTCAAGTTTTGATTTCTTCACTGAGGCTTAGAATCTTTTTATAGTTTGTAGTCTCACCACAAACTACAAAAAAAATTGAAACTCGATTTTTTGGCAATTTTTGAGCTAAAAACCACTCAAAATGATCGAAAACTAGTCGAGTTACGGCGATTTCAAGTTTTACTGAGGCTTAGGATCATTTTGTAGTTTGTAGTCCAAGCCTCAGTAAAAAGTAATCGCGCTATTTTTACTGAGGGTTAGAGACTATAAACTACAGAAAATTTGAGTTTTGAAATTCCGATTGTCTGAATTTTCGATTTTTTTTTCATTTTGAAGTTTCCTGAGGCTTAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAAATTTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTTACAGCGCTTTTAATTTTTACTGAGGCTTACGATTTTTGTAGTTCGTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTACTGAGGCTAACGGGACTACAAACTATGAAACTACAAACTATGAAACGCTTTTGAGCCTCGGTAAAACCGAGAGTTTTACTGAGGCTTAGACTACAAACTACAAAATTTTCTAAGCCTCAGTAAAGTTTCAAAGCCCTCGATCTCGGCTCATTTTCACTCGTTTTCAATGATTTT</canonical>
            <polymorphic>ATCTCTTCAATCTTCAAAACTAACCGAGTTACAGTTCTTTGAAACTTTACTGAGGCTTAGAAGCAATTCGTAGTTTGTAGTCGCACTATTTTTTTTTTGGAAATTTGATTTTCCGAATTTCTAATTTATAAAACACTATTTTTAAAGAAATTCCAATTCAATAACTTTCAAAATTAAAAATTAGACTTTTACTGAGGCTTAGAACGTTTTTATAGTTTGTGGTCTAAGCCTCAGCAAATTGTAATAGCGCTAATTCTACAATTAAAATTCGAATTTCACTTTTTTTCAAAATTTTATTTTTTCAAGTTTTGATTTCTTCACTGAGGCTTAGAATCTTTTTATAGTTTGTAGTCTCACCACAAACTACAAAAAAAATTGAAACTCGATTTTTTGGCAATTTTTGAGCTAAAAACCACTCAAAATGATCGAAAACTAGTCGAGTTACGGCGATTTCAAGTTTTACTGAGGCTTAGGATCATTTTGTAGTTTGTAGTCCAAGMCTCAGTAAAAAGTAATCGCGCTATTTTTACTGAGGGTTAGAGACTATAAACTACAGAAAATTTGAGTTTTGAAATTCCGATTGTCTGAATTTTCGATTTTTTTTTCATTTTGAAGTTTCCTGAGGCTTAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAAATTTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTTACAGCGCTTTTAATTTTTACTGAGGCTTACGATTTTTGTAGTTCGTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTACTGAGGCTAACGGGACTACAAACTATGAAACTACAAACTATGAAACGCTTTTGAGCCTCGGTAAAACCGAGAGTTTTACTGAGGCTTAGACTACAAACTACAAAATTTTCTAAGCCTCAGTAAAGTTTCAAAGCCCTCGATCTCGGCTCATTTTCACTCGTTTTCAATGATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>142 126 98 79 69 63 55 49 44 32 31 31 31 30 29 28 21 19 13 10</canonical_bands>
                <polymorphic_bands>157 142 98 79 69 63 55 49 44 32 31 31 30 29 28 21 19 13 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTTGATAACATCTGAAAGA</pcr_primer_p1>
		<pcr_primer_p2>AGACAATCGGAATTTCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>641</pcr_amplicon_size>
		<canonical_amplicon>GCCTCAGTAAAAAGTAATCGCGCTATTTTTACTGAGGGTTAGAGACTATAAACTACAGAAAATTTGAGTTTTGAAATTCCGATTGTCT</canonical_amplicon>
		<polymorphic_amplicon>GMCTCAGTAAAAAGTAATCGCGCTATTTTTACTGAGGGTTAGAGACTATAAACTACAGAAAATTTGAGTTTTGAAATTCCGATTGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23744</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>325336</contig_pos>
        <strand></strand>
        <context>tagtccaagm[C/T]tcagtaaaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCAAGTTTTACTGAGGCTTAGGATCATTTTGTAGTTTGTAGTCCAAGC</left_flank>
        <right_flank>TCAGTAAAAAGTAATCGCGCTATTTTTACTGAGGGTTAGAGACTATAAAC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCTTCAATCTTCAAAACTAACCGAGTTACAGTTCTTTGAAACTTTACTGAGGCTTAGAAGCAATTCGTAGTTTGTAGTCGCACTATTTTTTTTTTGGAAATTTGATTTTCCGAATTTCTAATTTATAAAACACTATTTTTAAAGAAATTCCAATTCAATAACTTTCAAAATTAAAAATTAGACTTTTACTGAGGCTTAGAACGTTTTTATAGTTTGTGGTCTAAGCCTCAGCAAATTGTAATAGCGCTAATTCTACAATTAAAATTCGAATTTCACTTTTTTTCAAAATTTTATTTTTTCAAGTTTTGATTTCTTCACTGAGGCTTAGAATCTTTTTATAGTTTGTAGTCTCACCACAAACTACAAAAAAAATTGAAACTCGATTTTTTGGCAATTTTTGAGCTAAAAACCACTCAAAATGATCGAAAACTAGTCGAGTTACGGCGATTTCAAGTTTTACTGAGGCTTAGGATCATTTTGTAGTTTGTAGTCCAAGCCTCAGTAAAAAGTAATCGCGCTATTTTTACTGAGGGTTAGAGACTATAAACTACAGAAAATTTGAGTTTTGAAATTCCGATTGTCTGAATTTTCGATTTTTTTTTCATTTTGAAGTTTCCTGAGGCTTAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAAATTTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTTACAGCGCTTTTAATTTTTACTGAGGCTTACGATTTTTGTAGTTCGTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTACTGAGGCTAACGGGACTACAAACTATGAAACTACAAACTATGAAACGCTTTTGAGCCTCGGTAAAACCGAGAGTTTTACTGAGGCTTAGACTACAAACTACAAAATTTTCTAAGCCTCAGTAAAGTTTCAAAGCCCTCGATCTCGGCTCATTTTCACTCGTTTTCAATGATTTTT</canonical>
            <polymorphic>TCTCTTCAATCTTCAAAACTAACCGAGTTACAGTTCTTTGAAACTTTACTGAGGCTTAGAAGCAATTCGTAGTTTGTAGTCGCACTATTTTTTTTTTGGAAATTTGATTTTCCGAATTTCTAATTTATAAAACACTATTTTTAAAGAAATTCCAATTCAATAACTTTCAAAATTAAAAATTAGACTTTTACTGAGGCTTAGAACGTTTTTATAGTTTGTGGTCTAAGCCTCAGCAAATTGTAATAGCGCTAATTCTACAATTAAAATTCGAATTTCACTTTTTTTCAAAATTTTATTTTTTCAAGTTTTGATTTCTTCACTGAGGCTTAGAATCTTTTTATAGTTTGTAGTCTCACCACAAACTACAAAAAAAATTGAAACTCGATTTTTTGGCAATTTTTGAGCTAAAAACCACTCAAAATGATCGAAAACTAGTCGAGTTACGGCGATTTCAAGTTTTACTGAGGCTTAGGATCATTTTGTAGTTTGTAGTCCAAGCYTCAGTAAAAAGTAATCGCGCTATTTTTACTGAGGGTTAGAGACTATAAACTACAGAAAATTTGAGTTTTGAAATTCCGATTGTCTGAATTTTCGATTTTTTTTTCATTTTGAAGTTTCCTGAGGCTTAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAAATTTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTTACAGCGCTTTTAATTTTTACTGAGGCTTACGATTTTTGTAGTTCGTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTACTGAGGCTAACGGGACTACAAACTATGAAACTACAAACTATGAAACGCTTTTGAGCCTCGGTAAAACCGAGAGTTTTACTGAGGCTTAGACTACAAACTACAAAATTTTCTAAGCCTCAGTAAAGTTTCAAAGCCCTCGATCTCGGCTCATTTTCACTCGTTTTCAATGATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>136 136 100 91 90 78 59 49 37 32 32 29 26 26 25 6 6 6 6 6 6 6 6 6</canonical_bands>
                <polymorphic_bands>136 136 100 91 90 78 61 59 49 37 32 26 26 25 6 6 6 6 6 6 6 6 6</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>142 126 98 79 69 63 54 49 44 32 31 31 31 30 29 29 21 19 13 10</canonical_bands>
                <polymorphic_bands>157 142 98 79 69 63 54 49 44 32 31 31 30 29 29 21 19 13 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTTGATAACATCTGAAAGA</pcr_primer_p1>
		<pcr_primer_p2>AGACAATCGGAATTTCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>641</pcr_amplicon_size>
		<canonical_amplicon>CCTCAGTAAAAAGTAATCGCGCTATTTTTACTGAGGGTTAGAGACTATAAACTACAGAAAATTTGAGTTTTGAAATTCCGATTGTCT</canonical_amplicon>
		<polymorphic_amplicon>CYTCAGTAAAAAGTAATCGCGCTATTTTTACTGAGGGTTAGAGACTATAAACTACAGAAAATTTGAGTTTTGAAATTCCGATTGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23745</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>325513</contig_pos>
        <strand></strand>
        <context>aaacttcaaa[A/C]wkttatactt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAA</left_flank>
        <right_flank>ATTTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTAGACTTTTACTGAGGCTTAGAACGTTTTTATAGTTTGTGGTCTAAGCCTCAGCAAATTGTAATAGCGCTAATTCTACAATTAAAATTCGAATTTCACTTTTTTTCAAAATTTTATTTTTTCAAGTTTTGATTTCTTCACTGAGGCTTAGAATCTTTTTATAGTTTGTAGTCTCACCACAAACTACAAAAAAAATTGAAACTCGATTTTTTGGCAATTTTTGAGCTAAAAACCACTCAAAATGATCGAAAACTAGTCGAGTTACGGCGATTTCAAGTTTTACTGAGGCTTAGGATCATTTTGTAGTTTGTAGTCCAAGCCTCAGTAAAAAGTAATCGCGCTATTTTTACTGAGGGTTAGAGACTATAAACTACAGAAAATTTGAGTTTTGAAATTCCGATTGTCTGAATTTTCGATTTTTTTTTCATTTTGAAGTTTCCTGAGGCTTAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAAATTTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTTACAGCGCTTTTAATTTTTACTGAGGCTTACGATTTTTGTAGTTCGTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTACTGAGGCTAACGGGACTACAAACTATGAAACTACAAACTATGAAACGCTTTTGAGCCTCGGTAAAACCGAGAGTTTTACTGAGGCTTAGACTACAAACTACAAAATTTTCTAAGCCTCAGTAAAGTTTCAAAGCCCTCGATCTCGGCTCATTTTCACTCGTTTTCAATGATTTTTGGCTCAAAATTTCGGGAATTTTTTTTGGAAATTTCGATTTTCCAGTCCTCAAAACTGTCTGCAATTGATCGCGCTGTCGCCTGGCTACTGGAATAATCCGGGAAAATTCGCCAGTTGGACAACGTCTTCTGGCCTTCTGGATGATTACTGGTGTATTGTTACCGAGGAGCCAAGTCA</canonical>
            <polymorphic>AATTAGACTTTTACTGAGGCTTAGAACGTTTTTATAGTTTGTGGTCTAAGCCTCAGCAAATTGTAATAGCGCTAATTCTACAATTAAAATTCGAATTTCACTTTTTTTCAAAATTTTATTTTTTCAAGTTTTGATTTCTTCACTGAGGCTTAGAATCTTTTTATAGTTTGTAGTCTCACCACAAACTACAAAAAAAATTGAAACTCGATTTTTTGGCAATTTTTGAGCTAAAAACCACTCAAAATGATCGAAAACTAGTCGAGTTACGGCGATTTCAAGTTTTACTGAGGCTTAGGATCATTTTGTAGTTTGTAGTCCAAGCCTCAGTAAAAAGTAATCGCGCTATTTTTACTGAGGGTTAGAGACTATAAACTACAGAAAATTTGAGTTTTGAAATTCCGATTGTCTGAATTTTCGATTTTTTTTTCATTTTGAAGTTTCCTGAGGCTTAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAMATTTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTTACAGCGCTTTTAATTTTTACTGAGGCTTACGATTTTTGTAGTTCGTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTACTGAGGCTAACGGGACTACAAACTATGAAACTACAAACTATGAAACGCTTTTGAGCCTCGGTAAAACCGAGAGTTTTACTGAGGCTTAGACTACAAACTACAAAATTTTCTAAGCCTCAGTAAAGTTTCAAAGCCCTCGATCTCGGCTCATTTTCACTCGTTTTCAATGATTTTTGGCTCAAAATTTCGGGAATTTTTTTTGGAAATTTCGATTTTCCAGTCCTCAAAACTGTCTGCAATTGATCGCGCTGTCGCCTGGCTACTGGAATAATCCGGGAAAATTCGCCAGTTGGACAACGTCTTCTGGCCTTCTGGATGATTACTGGTGTATTGTTACCGAGGAGCCAAGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>269 132 120 90 87 79 75 73 18 15 14 13 9 6</canonical_bands>
                <polymorphic_bands>269 210 132 87 79 75 73 18 15 14 13 9 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>163 132 90 84 79 73 66 58 54 42 33 22 18 15 15 14 13 9 8 6 6 0</canonical_bands>
                <polymorphic_bands>163 156 132 84 79 73 58 54 42 33 22 18 15 15 14 13 9 8 6 6 0</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGTCTGAATTTTCGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAGACAGTTTTGAGGACTGG</pcr_primer_p2>
		<pcr_amplicon_size>483</pcr_amplicon_size>
		<canonical_amplicon>ATTGTCTGAATTTTCGATTTTTTTTTCATTTTGAAGTTTCCTGAGGCTTAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAAATTTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTTACAGCGCTTTTAATTTTTACTGAGGCTTACGATTTTTGTAGTTCGTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTACTGAGGCTAACGGGACTACAAACTATGAAACTACAAACTATGAAACGCTTTTGAGCCTCGGTAAAACCGAGAGTTTTACTGAGGCTTAGACTACAAACTACAAAATTTTCTAAGCCTCAGTAAAGTTTCAAAGCCCTCGATCTCGGCTCATTTTCACTCGTTTTCAATGATTTTTGGCTCAAAATTTCGGGAATTTTTTTTGGAAATTTCGATTTTCCAGTCCTCAAAACTGTCTG</canonical_amplicon>
		<polymorphic_amplicon>ATTGTCTGAATTTTCGATTTTTTTTTCATTTTGAAGTTTCCTGAGGCTTAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAMATTTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTTACAGCGCTTTTAATTTTTACTGAGGCTTACGATTTTTGTAGTTCGTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTACTGAGGCTAACGGGACTACAAACTATGAAACTACAAACTATGAAACGCTTTTGAGCCTCGGTAAAACCGAGAGTTTTACTGAGGCTTAGACTACAAACTACAAAATTTTCTAAGCCTCAGTAAAGTTTCAAAGCCCTCGATCTCGGCTCATTTTCACTCGTTTTCAATGATTTTTGGCTCAAAATTTCGGGAATTTTTTTTGGAAATTTCGATTTTCCAGTCCTCAAAACTGTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23746</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>325514</contig_pos>
        <strand></strand>
        <context>aacttcaaam[A/T]kttatacttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAA</left_flank>
        <right_flank>TTTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTAGACTTTTACTGAGGCTTAGAACGTTTTTATAGTTTGTGGTCTAAGCCTCAGCAAATTGTAATAGCGCTAATTCTACAATTAAAATTCGAATTTCACTTTTTTTCAAAATTTTATTTTTTCAAGTTTTGATTTCTTCACTGAGGCTTAGAATCTTTTTATAGTTTGTAGTCTCACCACAAACTACAAAAAAAATTGAAACTCGATTTTTTGGCAATTTTTGAGCTAAAAACCACTCAAAATGATCGAAAACTAGTCGAGTTACGGCGATTTCAAGTTTTACTGAGGCTTAGGATCATTTTGTAGTTTGTAGTCCAAGCCTCAGTAAAAAGTAATCGCGCTATTTTTACTGAGGGTTAGAGACTATAAACTACAGAAAATTTGAGTTTTGAAATTCCGATTGTCTGAATTTTCGATTTTTTTTTCATTTTGAAGTTTCCTGAGGCTTAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAAATTTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTTACAGCGCTTTTAATTTTTACTGAGGCTTACGATTTTTGTAGTTCGTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTACTGAGGCTAACGGGACTACAAACTATGAAACTACAAACTATGAAACGCTTTTGAGCCTCGGTAAAACCGAGAGTTTTACTGAGGCTTAGACTACAAACTACAAAATTTTCTAAGCCTCAGTAAAGTTTCAAAGCCCTCGATCTCGGCTCATTTTCACTCGTTTTCAATGATTTTTGGCTCAAAATTTCGGGAATTTTTTTTGGAAATTTCGATTTTCCAGTCCTCAAAACTGTCTGCAATTGATCGCGCTGTCGCCTGGCTACTGGAATAATCCGGGAAAATTCGCCAGTTGGACAACGTCTTCTGGCCTTCTGGATGATTACTGGTGTATTGTTACCGAGGAGCCAAGTCAA</canonical>
            <polymorphic>ATTAGACTTTTACTGAGGCTTAGAACGTTTTTATAGTTTGTGGTCTAAGCCTCAGCAAATTGTAATAGCGCTAATTCTACAATTAAAATTCGAATTTCACTTTTTTTCAAAATTTTATTTTTTCAAGTTTTGATTTCTTCACTGAGGCTTAGAATCTTTTTATAGTTTGTAGTCTCACCACAAACTACAAAAAAAATTGAAACTCGATTTTTTGGCAATTTTTGAGCTAAAAACCACTCAAAATGATCGAAAACTAGTCGAGTTACGGCGATTTCAAGTTTTACTGAGGCTTAGGATCATTTTGTAGTTTGTAGTCCAAGCCTCAGTAAAAAGTAATCGCGCTATTTTTACTGAGGGTTAGAGACTATAAACTACAGAAAATTTGAGTTTTGAAATTCCGATTGTCTGAATTTTCGATTTTTTTTTCATTTTGAAGTTTCCTGAGGCTTAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAAWTTTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTTACAGCGCTTTTAATTTTTACTGAGGCTTACGATTTTTGTAGTTCGTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTACTGAGGCTAACGGGACTACAAACTATGAAACTACAAACTATGAAACGCTTTTGAGCCTCGGTAAAACCGAGAGTTTTACTGAGGCTTAGACTACAAACTACAAAATTTTCTAAGCCTCAGTAAAGTTTCAAAGCCCTCGATCTCGGCTCATTTTCACTCGTTTTCAATGATTTTTGGCTCAAAATTTCGGGAATTTTTTTTGGAAATTTCGATTTTCCAGTCCTCAAAACTGTCTGCAATTGATCGCGCTGTCGCCTGGCTACTGGAATAATCCGGGAAAATTCGCCAGTTGGACAACGTCTTCTGGCCTTCTGGATGATTACTGGTGTATTGTTACCGAGGAGCCAAGTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>269 132 120 90 86 79 75 74 18 15 14 13 9 6</canonical_bands>
                <polymorphic_bands>269 210 132 86 79 75 74 18 15 14 13 9 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>163 132 90 84 79 74 66 57 54 42 33 22 18 15 15 14 13 9 8 6 6</canonical_bands>
                <polymorphic_bands>163 156 132 84 79 74 57 54 42 33 22 18 15 15 14 13 9 8 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGTCTGAATTTTCGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAGACAGTTTTGAGGACTGG</pcr_primer_p2>
		<pcr_amplicon_size>483</pcr_amplicon_size>
		<canonical_amplicon>ATTGTCTGAATTTTCGATTTTTTTTTCATTTTGAAGTTTCCTGAGGCTTAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAAATTTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTTACAGCGCTTTTAATTTTTACTGAGGCTTACGATTTTTGTAGTTCGTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTACTGAGGCTAACGGGACTACAAACTATGAAACTACAAACTATGAAACGCTTTTGAGCCTCGGTAAAACCGAGAGTTTTACTGAGGCTTAGACTACAAACTACAAAATTTTCTAAGCCTCAGTAAAGTTTCAAAGCCCTCGATCTCGGCTCATTTTCACTCGTTTTCAATGATTTTTGGCTCAAAATTTCGGGAATTTTTTTTGGAAATTTCGATTTTCCAGTCCTCAAAACTGTCTG</canonical_amplicon>
		<polymorphic_amplicon>ATTGTCTGAATTTTCGATTTTTTTTTCATTTTGAAGTTTCCTGAGGCTTAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAAWTTTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTTACAGCGCTTTTAATTTTTACTGAGGCTTACGATTTTTGTAGTTCGTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTACTGAGGCTAACGGGACTACAAACTATGAAACTACAAACTATGAAACGCTTTTGAGCCTCGGTAAAACCGAGAGTTTTACTGAGGCTTAGACTACAAACTACAAAATTTTCTAAGCCTCAGTAAAGTTTCAAAGCCCTCGATCTCGGCTCATTTTCACTCGTTTTCAATGATTTTTGGCTCAAAATTTCGGGAATTTTTTTTGGAAATTTCGATTTTCCAGTCCTCAAAACTGTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23747</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>325515</contig_pos>
        <strand></strand>
        <context>acttcaaamw[T/G]ttatactttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAAA</left_flank>
        <right_flank>TTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAGACTTTTACTGAGGCTTAGAACGTTTTTATAGTTTGTGGTCTAAGCCTCAGCAAATTGTAATAGCGCTAATTCTACAATTAAAATTCGAATTTCACTTTTTTTCAAAATTTTATTTTTTCAAGTTTTGATTTCTTCACTGAGGCTTAGAATCTTTTTATAGTTTGTAGTCTCACCACAAACTACAAAAAAAATTGAAACTCGATTTTTTGGCAATTTTTGAGCTAAAAACCACTCAAAATGATCGAAAACTAGTCGAGTTACGGCGATTTCAAGTTTTACTGAGGCTTAGGATCATTTTGTAGTTTGTAGTCCAAGCCTCAGTAAAAAGTAATCGCGCTATTTTTACTGAGGGTTAGAGACTATAAACTACAGAAAATTTGAGTTTTGAAATTCCGATTGTCTGAATTTTCGATTTTTTTTTCATTTTGAAGTTTCCTGAGGCTTAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAAATTTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTTACAGCGCTTTTAATTTTTACTGAGGCTTACGATTTTTGTAGTTCGTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTACTGAGGCTAACGGGACTACAAACTATGAAACTACAAACTATGAAACGCTTTTGAGCCTCGGTAAAACCGAGAGTTTTACTGAGGCTTAGACTACAAACTACAAAATTTTCTAAGCCTCAGTAAAGTTTCAAAGCCCTCGATCTCGGCTCATTTTCACTCGTTTTCAATGATTTTTGGCTCAAAATTTCGGGAATTTTTTTTGGAAATTTCGATTTTCCAGTCCTCAAAACTGTCTGCAATTGATCGCGCTGTCGCCTGGCTACTGGAATAATCCGGGAAAATTCGCCAGTTGGACAACGTCTTCTGGCCTTCTGGATGATTACTGGTGTATTGTTACCGAGGAGCCAAGTCAAC</canonical>
            <polymorphic>TTAGACTTTTACTGAGGCTTAGAACGTTTTTATAGTTTGTGGTCTAAGCCTCAGCAAATTGTAATAGCGCTAATTCTACAATTAAAATTCGAATTTCACTTTTTTTCAAAATTTTATTTTTTCAAGTTTTGATTTCTTCACTGAGGCTTAGAATCTTTTTATAGTTTGTAGTCTCACCACAAACTACAAAAAAAATTGAAACTCGATTTTTTGGCAATTTTTGAGCTAAAAACCACTCAAAATGATCGAAAACTAGTCGAGTTACGGCGATTTCAAGTTTTACTGAGGCTTAGGATCATTTTGTAGTTTGTAGTCCAAGCCTCAGTAAAAAGTAATCGCGCTATTTTTACTGAGGGTTAGAGACTATAAACTACAGAAAATTTGAGTTTTGAAATTCCGATTGTCTGAATTTTCGATTTTTTTTTCATTTTGAAGTTTCCTGAGGCTTAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAAAKTTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTTACAGCGCTTTTAATTTTTACTGAGGCTTACGATTTTTGTAGTTCGTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTACTGAGGCTAACGGGACTACAAACTATGAAACTACAAACTATGAAACGCTTTTGAGCCTCGGTAAAACCGAGAGTTTTACTGAGGCTTAGACTACAAACTACAAAATTTTCTAAGCCTCAGTAAAGTTTCAAAGCCCTCGATCTCGGCTCATTTTCACTCGTTTTCAATGATTTTTGGCTCAAAATTTCGGGAATTTTTTTTGGAAATTTCGATTTTCCAGTCCTCAAAACTGTCTGCAATTGATCGCGCTGTCGCCTGGCTACTGGAATAATCCGGGAAAATTCGCCAGTTGGACAACGTCTTCTGGCCTTCTGGATGATTACTGGTGTATTGTTACCGAGGAGCCAAGTCAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>269 132 120 90 85 79 75 75 18 15 14 13 9 6</canonical_bands>
                <polymorphic_bands>269 210 132 85 79 75 75 18 15 14 13 9 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>163 132 90 84 79 75 66 56 54 42 33 22 18 15 15 14 13 9 8 6 6</canonical_bands>
                <polymorphic_bands>163 156 132 84 79 75 56 54 42 33 22 18 15 15 14 13 9 8 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGTCTGAATTTTCGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAGACAGTTTTGAGGACTGG</pcr_primer_p2>
		<pcr_amplicon_size>483</pcr_amplicon_size>
		<canonical_amplicon>ATTGTCTGAATTTTCGATTTTTTTTTCATTTTGAAGTTTCCTGAGGCTTAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAAATTTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTTACAGCGCTTTTAATTTTTACTGAGGCTTACGATTTTTGTAGTTCGTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTACTGAGGCTAACGGGACTACAAACTATGAAACTACAAACTATGAAACGCTTTTGAGCCTCGGTAAAACCGAGAGTTTTACTGAGGCTTAGACTACAAACTACAAAATTTTCTAAGCCTCAGTAAAGTTTCAAAGCCCTCGATCTCGGCTCATTTTCACTCGTTTTCAATGATTTTTGGCTCAAAATTTCGGGAATTTTTTTTGGAAATTTCGATTTTCCAGTCCTCAAAACTGTCTG</canonical_amplicon>
		<polymorphic_amplicon>ATTGTCTGAATTTTCGATTTTTTTTTCATTTTGAAGTTTCCTGAGGCTTAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAAAKTTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTTACAGCGCTTTTAATTTTTACTGAGGCTTACGATTTTTGTAGTTCGTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTACTGAGGCTAACGGGACTACAAACTATGAAACTACAAACTATGAAACGCTTTTGAGCCTCGGTAAAACCGAGAGTTTTACTGAGGCTTAGACTACAAACTACAAAATTTTCTAAGCCTCAGTAAAGTTTCAAAGCCCTCGATCTCGGCTCATTTTCACTCGTTTTCAATGATTTTTGGCTCAAAATTTCGGGAATTTTTTTTGGAAATTTCGATTTTCCAGTCCTCAAAACTGTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23748</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>325527</contig_pos>
        <strand></strand>
        <context>tatacttttt[C/G]agctaaaaac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAAATTTATACTTTTT</left_flank>
        <right_flank>AGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTTACAGCGCTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGGCTTAGAACGTTTTTATAGTTTGTGGTCTAAGCCTCAGCAAATTGTAATAGCGCTAATTCTACAATTAAAATTCGAATTTCACTTTTTTTCAAAATTTTATTTTTTCAAGTTTTGATTTCTTCACTGAGGCTTAGAATCTTTTTATAGTTTGTAGTCTCACCACAAACTACAAAAAAAATTGAAACTCGATTTTTTGGCAATTTTTGAGCTAAAAACCACTCAAAATGATCGAAAACTAGTCGAGTTACGGCGATTTCAAGTTTTACTGAGGCTTAGGATCATTTTGTAGTTTGTAGTCCAAGCCTCAGTAAAAAGTAATCGCGCTATTTTTACTGAGGGTTAGAGACTATAAACTACAGAAAATTTGAGTTTTGAAATTCCGATTGTCTGAATTTTCGATTTTTTTTTCATTTTGAAGTTTCCTGAGGCTTAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAAATTTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTTACAGCGCTTTTAATTTTTACTGAGGCTTACGATTTTTGTAGTTCGTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTACTGAGGCTAACGGGACTACAAACTATGAAACTACAAACTATGAAACGCTTTTGAGCCTCGGTAAAACCGAGAGTTTTACTGAGGCTTAGACTACAAACTACAAAATTTTCTAAGCCTCAGTAAAGTTTCAAAGCCCTCGATCTCGGCTCATTTTCACTCGTTTTCAATGATTTTTGGCTCAAAATTTCGGGAATTTTTTTTGGAAATTTCGATTTTCCAGTCCTCAAAACTGTCTGCAATTGATCGCGCTGTCGCCTGGCTACTGGAATAATCCGGGAAAATTCGCCAGTTGGACAACGTCTTCTGGCCTTCTGGATGATTACTGGTGTATTGTTACCGAGGAGCCAAGTCAACGAATGTACGCGT</canonical>
            <polymorphic>TGAGGCTTAGAACGTTTTTATAGTTTGTGGTCTAAGCCTCAGCAAATTGTAATAGCGCTAATTCTACAATTAAAATTCGAATTTCACTTTTTTTCAAAATTTTATTTTTTCAAGTTTTGATTTCTTCACTGAGGCTTAGAATCTTTTTATAGTTTGTAGTCTCACCACAAACTACAAAAAAAATTGAAACTCGATTTTTTGGCAATTTTTGAGCTAAAAACCACTCAAAATGATCGAAAACTAGTCGAGTTACGGCGATTTCAAGTTTTACTGAGGCTTAGGATCATTTTGTAGTTTGTAGTCCAAGCCTCAGTAAAAAGTAATCGCGCTATTTTTACTGAGGGTTAGAGACTATAAACTACAGAAAATTTGAGTTTTGAAATTCCGATTGTCTGAATTTTCGATTTTTTTTTCATTTTGAAGTTTCCTGAGGCTTAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAAATTTATACTTTTTSAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTTACAGCGCTTTTAATTTTTACTGAGGCTTACGATTTTTGTAGTTCGTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTACTGAGGCTAACGGGACTACAAACTATGAAACTACAAACTATGAAACGCTTTTGAGCCTCGGTAAAACCGAGAGTTTTACTGAGGCTTAGACTACAAACTACAAAATTTTCTAAGCCTCAGTAAAGTTTCAAAGCCCTCGATCTCGGCTCATTTTCACTCGTTTTCAATGATTTTTGGCTCAAAATTTCGGGAATTTTTTTTGGAAATTTCGATTTTCCAGTCCTCAAAACTGTCTGCAATTGATCGCGCTGTCGCCTGGCTACTGGAATAATCCGGGAAAATTCGCCAGTTGGACAACGTCTTCTGGCCTTCTGGATGATTACTGGTGTATTGTTACCGAGGAGCCAAGTCAACGAATGTACGCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGTCTGAATTTTCGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAGACAGTTTTGAGGACTGG</pcr_primer_p2>
		<pcr_amplicon_size>483</pcr_amplicon_size>
		<canonical_amplicon>ATTGTCTGAATTTTCGATTTTTTTTTCATTTTGAAGTTTCCTGAGGCTTAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAAATTTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTTACAGCGCTTTTAATTTTTACTGAGGCTTACGATTTTTGTAGTTCGTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTACTGAGGCTAACGGGACTACAAACTATGAAACTACAAACTATGAAACGCTTTTGAGCCTCGGTAAAACCGAGAGTTTTACTGAGGCTTAGACTACAAACTACAAAATTTTCTAAGCCTCAGTAAAGTTTCAAAGCCCTCGATCTCGGCTCATTTTCACTCGTTTTCAATGATTTTTGGCTCAAAATTTCGGGAATTTTTTTTGGAAATTTCGATTTTCCAGTCCTCAAAACTGTCTG</canonical_amplicon>
		<polymorphic_amplicon>ATTGTCTGAATTTTCGATTTTTTTTTCATTTTGAAGTTTCCTGAGGCTTAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAAATTTATACTTTTTSAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTTACAGCGCTTTTAATTTTTACTGAGGCTTACGATTTTTGTAGTTCGTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTACTGAGGCTAACGGGACTACAAACTATGAAACTACAAACTATGAAACGCTTTTGAGCCTCGGTAAAACCGAGAGTTTTACTGAGGCTTAGACTACAAACTACAAAATTTTCTAAGCCTCAGTAAAGTTTCAAAGCCCTCGATCTCGGCTCATTTTCACTCGTTTTCAATGATTTTTGGCTCAAAATTTCGGGAATTTTTTTTGGAAATTTCGATTTTCCAGTCCTCAAAACTGTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23749</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>325567</contig_pos>
        <strand></strand>
        <context>ctagctgagt[T/C]acagcgcttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGT</left_flank>
        <right_flank>ACAGCGCTTTTAATTTTTACTGAGGCTTACGATTTTTGTAGTTCGTAGTC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCAAATTGTAATAGCGCTAATTCTACAATTAAAATTCGAATTTCACTTTTTTTCAAAATTTTATTTTTTCAAGTTTTGATTTCTTCACTGAGGCTTAGAATCTTTTTATAGTTTGTAGTCTCACCACAAACTACAAAAAAAATTGAAACTCGATTTTTTGGCAATTTTTGAGCTAAAAACCACTCAAAATGATCGAAAACTAGTCGAGTTACGGCGATTTCAAGTTTTACTGAGGCTTAGGATCATTTTGTAGTTTGTAGTCCAAGCCTCAGTAAAAAGTAATCGCGCTATTTTTACTGAGGGTTAGAGACTATAAACTACAGAAAATTTGAGTTTTGAAATTCCGATTGTCTGAATTTTCGATTTTTTTTTCATTTTGAAGTTTCCTGAGGCTTAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAAATTTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTTACAGCGCTTTTAATTTTTACTGAGGCTTACGATTTTTGTAGTTCGTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTACTGAGGCTAACGGGACTACAAACTATGAAACTACAAACTATGAAACGCTTTTGAGCCTCGGTAAAACCGAGAGTTTTACTGAGGCTTAGACTACAAACTACAAAATTTTCTAAGCCTCAGTAAAGTTTCAAAGCCCTCGATCTCGGCTCATTTTCACTCGTTTTCAATGATTTTTGGCTCAAAATTTCGGGAATTTTTTTTGGAAATTTCGATTTTCCAGTCCTCAAAACTGTCTGCAATTGATCGCGCTGTCGCCTGGCTACTGGAATAATCCGGGAAAATTCGCCAGTTGGACAACGTCTTCTGGCCTTCTGGATGATTACTGGTGTATTGTTACCGAGGAGCCAAGTCAACGAATGTACGCGTGTGGAAAGAGAGGACCCCCGGGAGAACACTGCTGGATAAA</canonical>
            <polymorphic>AGCAAATTGTAATAGCGCTAATTCTACAATTAAAATTCGAATTTCACTTTTTTTCAAAATTTTATTTTTTCAAGTTTTGATTTCTTCACTGAGGCTTAGAATCTTTTTATAGTTTGTAGTCTCACCACAAACTACAAAAAAAATTGAAACTCGATTTTTTGGCAATTTTTGAGCTAAAAACCACTCAAAATGATCGAAAACTAGTCGAGTTACGGCGATTTCAAGTTTTACTGAGGCTTAGGATCATTTTGTAGTTTGTAGTCCAAGCCTCAGTAAAAAGTAATCGCGCTATTTTTACTGAGGGTTAGAGACTATAAACTACAGAAAATTTGAGTTTTGAAATTCCGATTGTCTGAATTTTCGATTTTTTTTTCATTTTGAAGTTTCCTGAGGCTTAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAAATTTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTYACAGCGCTTTTAATTTTTACTGAGGCTTACGATTTTTGTAGTTCGTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTACTGAGGCTAACGGGACTACAAACTATGAAACTACAAACTATGAAACGCTTTTGAGCCTCGGTAAAACCGAGAGTTTTACTGAGGCTTAGACTACAAACTACAAAATTTTCTAAGCCTCAGTAAAGTTTCAAAGCCCTCGATCTCGGCTCATTTTCACTCGTTTTCAATGATTTTTGGCTCAAAATTTCGGGAATTTTTTTTGGAAATTTCGATTTTCCAGTCCTCAAAACTGTCTGCAATTGATCGCGCTGTCGCCTGGCTACTGGAATAATCCGGGAAAATTCGCCAGTTGGACAACGTCTTCTGGCCTTCTGGATGATTACTGGTGTATTGTTACCGAGGAGCCAAGTCAACGAATGTACGCGTGTGGAAAGAGAGGACCCCCGGGAGAACACTGCTGGATAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGTCTGAATTTTCGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAGACAGTTTTGAGGACTGG</pcr_primer_p2>
		<pcr_amplicon_size>483</pcr_amplicon_size>
		<canonical_amplicon>ATTGTCTGAATTTTCGATTTTTTTTTCATTTTGAAGTTTCCTGAGGCTTAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAAATTTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTTACAGCGCTTTTAATTTTTACTGAGGCTTACGATTTTTGTAGTTCGTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTACTGAGGCTAACGGGACTACAAACTATGAAACTACAAACTATGAAACGCTTTTGAGCCTCGGTAAAACCGAGAGTTTTACTGAGGCTTAGACTACAAACTACAAAATTTTCTAAGCCTCAGTAAAGTTTCAAAGCCCTCGATCTCGGCTCATTTTCACTCGTTTTCAATGATTTTTGGCTCAAAATTTCGGGAATTTTTTTTGGAAATTTCGATTTTCCAGTCCTCAAAACTGTCTG</canonical_amplicon>
		<polymorphic_amplicon>ATTGTCTGAATTTTCGATTTTTTTTTCATTTTGAAGTTTCCTGAGGCTTAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAAATTTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTYACAGCGCTTTTAATTTTTACTGAGGCTTACGATTTTTGTAGTTCGTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTACTGAGGCTAACGGGACTACAAACTATGAAACTACAAACTATGAAACGCTTTTGAGCCTCGGTAAAACCGAGAGTTTTACTGAGGCTTAGACTACAAACTACAAAATTTTCTAAGCCTCAGTAAAGTTTCAAAGCCCTCGATCTCGGCTCATTTTCACTCGTTTTCAATGATTTTTGGCTCAAAATTTCGGGAATTTTTTTTGGAAATTTCGATTTTCCAGTCCTCAAAACTGTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23750</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>325581</contig_pos>
        <strand></strand>
        <context>gcgcttttaa[T/A]ttttactgag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTTACAGCGCTTTTAA</left_flank>
        <right_flank>TTTTACTGAGGCTTACGATTTTTGTAGTTCGTAGTCGCTAAGCCTCAGTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGCTAATTCTACAATTAAAATTCGAATTTCACTTTTTTTCAAAATTTTATTTTTTCAAGTTTTGATTTCTTCACTGAGGCTTAGAATCTTTTTATAGTTTGTAGTCTCACCACAAACTACAAAAAAAATTGAAACTCGATTTTTTGGCAATTTTTGAGCTAAAAACCACTCAAAATGATCGAAAACTAGTCGAGTTACGGCGATTTCAAGTTTTACTGAGGCTTAGGATCATTTTGTAGTTTGTAGTCCAAGCCTCAGTAAAAAGTAATCGCGCTATTTTTACTGAGGGTTAGAGACTATAAACTACAGAAAATTTGAGTTTTGAAATTCCGATTGTCTGAATTTTCGATTTTTTTTTCATTTTGAAGTTTCCTGAGGCTTAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAAATTTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTTACAGCGCTTTTAATTTTTACTGAGGCTTACGATTTTTGTAGTTCGTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTACTGAGGCTAACGGGACTACAAACTATGAAACTACAAACTATGAAACGCTTTTGAGCCTCGGTAAAACCGAGAGTTTTACTGAGGCTTAGACTACAAACTACAAAATTTTCTAAGCCTCAGTAAAGTTTCAAAGCCCTCGATCTCGGCTCATTTTCACTCGTTTTCAATGATTTTTGGCTCAAAATTTCGGGAATTTTTTTTGGAAATTTCGATTTTCCAGTCCTCAAAACTGTCTGCAATTGATCGCGCTGTCGCCTGGCTACTGGAATAATCCGGGAAAATTCGCCAGTTGGACAACGTCTTCTGGCCTTCTGGATGATTACTGGTGTATTGTTACCGAGGAGCCAAGTCAACGAATGTACGCGTGTGGAAAGAGAGGACCCCCGGGAGAACACTGCTGGATAAATGGGATTACTGTAT</canonical>
            <polymorphic>GCGCTAATTCTACAATTAAAATTCGAATTTCACTTTTTTTCAAAATTTTATTTTTTCAAGTTTTGATTTCTTCACTGAGGCTTAGAATCTTTTTATAGTTTGTAGTCTCACCACAAACTACAAAAAAAATTGAAACTCGATTTTTTGGCAATTTTTGAGCTAAAAACCACTCAAAATGATCGAAAACTAGTCGAGTTACGGCGATTTCAAGTTTTACTGAGGCTTAGGATCATTTTGTAGTTTGTAGTCCAAGCCTCAGTAAAAAGTAATCGCGCTATTTTTACTGAGGGTTAGAGACTATAAACTACAGAAAATTTGAGTTTTGAAATTCCGATTGTCTGAATTTTCGATTTTTTTTTCATTTTGAAGTTTCCTGAGGCTTAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAAATTTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTTACAGCGCTTTTAAWTTTTACTGAGGCTTACGATTTTTGTAGTTCGTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTACTGAGGCTAACGGGACTACAAACTATGAAACTACAAACTATGAAACGCTTTTGAGCCTCGGTAAAACCGAGAGTTTTACTGAGGCTTAGACTACAAACTACAAAATTTTCTAAGCCTCAGTAAAGTTTCAAAGCCCTCGATCTCGGCTCATTTTCACTCGTTTTCAATGATTTTTGGCTCAAAATTTCGGGAATTTTTTTTGGAAATTTCGATTTTCCAGTCCTCAAAACTGTCTGCAATTGATCGCGCTGTCGCCTGGCTACTGGAATAATCCGGGAAAATTCGCCAGTTGGACAACGTCTTCTGGCCTTCTGGATGATTACTGGTGTATTGTTACCGAGGAGCCAAGTCAACGAATGTACGCGTGTGGAAAGAGAGGACCCCCGGGAGAACACTGCTGGATAAATGGGATTACTGTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>163 141 132 90 84 79 66 54 42 33 22 18 15 14 13 9 8 6 6 5</canonical_bands>
                <polymorphic_bands>163 141 132 120 90 84 79 42 33 22 18 15 14 13 9 8 6 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGTCTGAATTTTCGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAGACAGTTTTGAGGACTGG</pcr_primer_p2>
		<pcr_amplicon_size>483</pcr_amplicon_size>
		<canonical_amplicon>ATTGTCTGAATTTTCGATTTTTTTTTCATTTTGAAGTTTCCTGAGGCTTAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAAATTTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTTACAGCGCTTTTAATTTTTACTGAGGCTTACGATTTTTGTAGTTCGTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTACTGAGGCTAACGGGACTACAAACTATGAAACTACAAACTATGAAACGCTTTTGAGCCTCGGTAAAACCGAGAGTTTTACTGAGGCTTAGACTACAAACTACAAAATTTTCTAAGCCTCAGTAAAGTTTCAAAGCCCTCGATCTCGGCTCATTTTCACTCGTTTTCAATGATTTTTGGCTCAAAATTTCGGGAATTTTTTTTGGAAATTTCGATTTTCCAGTCCTCAAAACTGTCTG</canonical_amplicon>
		<polymorphic_amplicon>ATTGTCTGAATTTTCGATTTTTTTTTCATTTTGAAGTTTCCTGAGGCTTAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAAATTTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTTACAGCGCTTTTAAWTTTTACTGAGGCTTACGATTTTTGTAGTTCGTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTACTGAGGCTAACGGGACTACAAACTATGAAACTACAAACTATGAAACGCTTTTGAGCCTCGGTAAAACCGAGAGTTTTACTGAGGCTTAGACTACAAACTACAAAATTTTCTAAGCCTCAGTAAAGTTTCAAAGCCCTCGATCTCGGCTCATTTTCACTCGTTTTCAATGATTTTTGGCTCAAAATTTCGGGAATTTTTTTTGGAAATTTCGATTTTCCAGTCCTCAAAACTGTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23751</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>325611</contig_pos>
        <strand></strand>
        <context>ttttgtagtt[C/T]gtagtcgcta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGAGTTACAGCGCTTTTAATTTTTACTGAGGCTTACGATTTTTGTAGTT</left_flank>
        <right_flank>GTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTTTTTTTCAAAATTTTATTTTTTCAAGTTTTGATTTCTTCACTGAGGCTTAGAATCTTTTTATAGTTTGTAGTCTCACCACAAACTACAAAAAAAATTGAAACTCGATTTTTTGGCAATTTTTGAGCTAAAAACCACTCAAAATGATCGAAAACTAGTCGAGTTACGGCGATTTCAAGTTTTACTGAGGCTTAGGATCATTTTGTAGTTTGTAGTCCAAGCCTCAGTAAAAAGTAATCGCGCTATTTTTACTGAGGGTTAGAGACTATAAACTACAGAAAATTTGAGTTTTGAAATTCCGATTGTCTGAATTTTCGATTTTTTTTTCATTTTGAAGTTTCCTGAGGCTTAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAAATTTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTTACAGCGCTTTTAATTTTTACTGAGGCTTACGATTTTTGTAGTTCGTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTACTGAGGCTAACGGGACTACAAACTATGAAACTACAAACTATGAAACGCTTTTGAGCCTCGGTAAAACCGAGAGTTTTACTGAGGCTTAGACTACAAACTACAAAATTTTCTAAGCCTCAGTAAAGTTTCAAAGCCCTCGATCTCGGCTCATTTTCACTCGTTTTCAATGATTTTTGGCTCAAAATTTCGGGAATTTTTTTTGGAAATTTCGATTTTCCAGTCCTCAAAACTGTCTGCAATTGATCGCGCTGTCGCCTGGCTACTGGAATAATCCGGGAAAATTCGCCAGTTGGACAACGTCTTCTGGCCTTCTGGATGATTACTGGTGTATTGTTACCGAGGAGCCAAGTCAACGAATGTACGCGTGTGGAAAGAGAGGACCCCCGGGAGAACACTGCTGGATAAATGGGATTACTGTATCTCTATTTTTCGGTTACTGTATTTTTAATT</canonical>
            <polymorphic>CACTTTTTTTCAAAATTTTATTTTTTCAAGTTTTGATTTCTTCACTGAGGCTTAGAATCTTTTTATAGTTTGTAGTCTCACCACAAACTACAAAAAAAATTGAAACTCGATTTTTTGGCAATTTTTGAGCTAAAAACCACTCAAAATGATCGAAAACTAGTCGAGTTACGGCGATTTCAAGTTTTACTGAGGCTTAGGATCATTTTGTAGTTTGTAGTCCAAGCCTCAGTAAAAAGTAATCGCGCTATTTTTACTGAGGGTTAGAGACTATAAACTACAGAAAATTTGAGTTTTGAAATTCCGATTGTCTGAATTTTCGATTTTTTTTTCATTTTGAAGTTTCCTGAGGCTTAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAAATTTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTTACAGCGCTTTTAATTTTTACTGAGGCTTACGATTTTTGTAGTTYGTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTACTGAGGCTAACGGGACTACAAACTATGAAACTACAAACTATGAAACGCTTTTGAGCCTCGGTAAAACCGAGAGTTTTACTGAGGCTTAGACTACAAACTACAAAATTTTCTAAGCCTCAGTAAAGTTTCAAAGCCCTCGATCTCGGCTCATTTTCACTCGTTTTCAATGATTTTTGGCTCAAAATTTCGGGAATTTTTTTTGGAAATTTCGATTTTCCAGTCCTCAAAACTGTCTGCAATTGATCGCGCTGTCGCCTGGCTACTGGAATAATCCGGGAAAATTCGCCAGTTGGACAACGTCTTCTGGCCTTCTGGATGATTACTGGTGTATTGTTACCGAGGAGCCAAGTCAACGAATGTACGCGTGTGGAAAGAGAGGACCCCCGGGAGAACACTGCTGGATAAATGGGATTACTGTATCTCTATTTTTCGGTTACTGTATTTTTAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGTCTGAATTTTCGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAGACAGTTTTGAGGACTGG</pcr_primer_p2>
		<pcr_amplicon_size>483</pcr_amplicon_size>
		<canonical_amplicon>ATTGTCTGAATTTTCGATTTTTTTTTCATTTTGAAGTTTCCTGAGGCTTAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAAATTTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTTACAGCGCTTTTAATTTTTACTGAGGCTTACGATTTTTGTAGTTCGTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTACTGAGGCTAACGGGACTACAAACTATGAAACTACAAACTATGAAACGCTTTTGAGCCTCGGTAAAACCGAGAGTTTTACTGAGGCTTAGACTACAAACTACAAAATTTTCTAAGCCTCAGTAAAGTTTCAAAGCCCTCGATCTCGGCTCATTTTCACTCGTTTTCAATGATTTTTGGCTCAAAATTTCGGGAATTTTTTTTGGAAATTTCGATTTTCCAGTCCTCAAAACTGTCTG</canonical_amplicon>
		<polymorphic_amplicon>ATTGTCTGAATTTTCGATTTTTTTTTCATTTTGAAGTTTCCTGAGGCTTAGGATCGTTTTATAGTTTGTAGTCTCACTACAAACTACAAAACTTCAAAAATTTATACTTTTTCAGCTAAAAACAGCTCAAAACGATCAAAAACTAGCTGAGTTACAGCGCTTTTAATTTTTACTGAGGCTTACGATTTTTGTAGTTYGTAGTCGCTAAGCCTCAGTAAAATTTTTCGCGATACGAGTGTGAGTTTTACTGAGGCTAACGGGACTACAAACTATGAAACTACAAACTATGAAACGCTTTTGAGCCTCGGTAAAACCGAGAGTTTTACTGAGGCTTAGACTACAAACTACAAAATTTTCTAAGCCTCAGTAAAGTTTCAAAGCCCTCGATCTCGGCTCATTTTCACTCGTTTTCAATGATTTTTGGCTCAAAATTTCGGGAATTTTTTTTGGAAATTTCGATTTTCCAGTCCTCAAAACTGTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23752</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>327501</contig_pos>
        <strand>+</strand>
        <context>ATTCGCCATT[A/G]TCCGTTCAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTTCTGAAAAATTTTGTAGTTTGTAGTCTTACACAGGATTCGCCATT</left_flank>
        <right_flank>TCCGTTCAAGAATCGGGCGGTGCGGTGGGTTTGTTGATGTGATGGGCGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCGTTGTGACTTCTGATGCCAACATATTCAATGAATCCAAAAATTCTGACGATTCTTCTCGAATTTCAATGTTCGCTGTTCCACGTGGCGCTGTTTGACTAAAAATTATTAGACGATTTACATAATTTTGTAGTTTGTAGTCTCTAAGCCTCAGTAAACATTTGTTTTCAAACTAACATTGGTGCTCGAGTATTTCCTGTTGGTCGCAATTGTGCAACAATCGATGGTCCAGGTCTGAAATATAGATTTTTTGAAGACTACAAAGACTACAAACTACACAAATTTCGCCAAGTTATTAGGTTTTGAAAACTACAGAGACTACAAACTACAACTTCGATTTATTCAAAATATCATTGTAAAAAAATTGTAGTTTGTAGTCTTTAAAGTCAAATCTAAAAATCTTCATATCTCGGCTCCAAATTATCGTATAACACCATTTTTCGACTGAAATTTCTGAAAAATTTTGTAGTTTGTAGTCTTACACAGGATTCGCCATTATCCGTTCAAGAATCGGGCGGTGCGGTGGGTTTGTTGATGTGATGGGCGGAATTTTTTGATATAGACTGTGGAACATCTGGACAGCTGGTTTCGATGAGCTGGAAATCAATTTTACTGAGGCTTAGAGACTATAAACTACAAAAAAGAAAAAAAAAGGAAAATTTTTGAGCTAATAATGAACAAAAACAAAGTCTATTTAAAGTTTTACTGAGGCTTAGAGCATTTTGTAGTTTGTAGTCTCCAAGCCTCAGTAAAACTTCGAGTCGACGTAACTTGCTTCTTTTTAAATAGTTTTCTCTAAAAATTTCGCAACTTTTCAGATGAGACTACAAACTACAATAATTCCTAAGCCTCAGTAAAAAACATACTCTGGCTTTGCTGGAGCTGGACGGGCAGTAGTCGACATTAGTGACGGGAATGTTCTTCTGCTGAAAATTAGAAGACTGCAAACTACAAAAATTGCTAAGCCTCAGTAAAAAGCTTACGATGGCTGTGGTCGA</canonical>
            <polymorphic>AGTCGTTGTGACTTCTGATGCCAACATATTCAATGAATCCAAAAATTCTGACGATTCTTCTCGAATTTCAATGTTCGCTGTTCCACGTGGCGCTGTTTGACTAAAAATTATTAGACGATTTACATAATTTTGTAGTTTGTAGTCTCTAAGCCTCAGTAAACATTTGTTTTCAAACTAACATTGGTGCTCGAGTATTTCCTGTTGGTCGCAATTGTGCAACAATCGATGGTCCAGGTCTGAAATATAGATTTTTTGAAGACTACAAAGACTACAAACTACACAAATTTCGCCAAGTTATTAGGTTTTGAAAACTACAGAGACTACAAACTACAACTTCGATTTATTCAAAATATCATTGTAAAAAAATTGTAGTTTGTAGTCTTTAAAGTCAAATCTAAAAATCTTCATATCTCGGCTCCAAATTATCGTATAACACCATTTTTCGACTGAAATTTCTGAAAAATTTTGTAGTTTGTAGTCTTACACAGGATTCGCCATTRTCCGTTCAAGAATCGGGCGGTGCGGTGGGTTTGTTGATGTGATGGGCGGAATTTTTTGATATAGACTGTGGAACATCTGGACAGCTGGTTTCGATGAGCTGGAAATCAATTTTACTGAGGCTTAGAGACTATAAACTACAAAAAAGAAAAAAAAAGGAAAATTTTTGAGCTAATAATGAACAAAAACAAAGTCTATTTAAAGTTTTACTGAGGCTTAGAGCATTTTGTAGTTTGTAGTCTCCAAGCCTCAGTAAAACTTCGAGTCGACGTAACTTGCTTCTTTTTAAATAGTTTTCTCTAAAAATTTCGCAACTTTTCAGATGAGACTACAAACTACAATAATTCCTAAGCCTCAGTAAAAAACATACTCTGGCTTTGCTGGAGCTGGACGGGCAGTAGTCGACATTAGTGACGGGAATGTTCTTCTGCTGAAAATTAGAAGACTGCAAACTACAAAAATTGCTAAGCCTCAGTAAAAAGCTTACGATGGCTGTGGTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTTCGATTTATTCAAAATATCAT</pcr_primer_p1>
		<pcr_primer_p2>CCAGATGTTCCACAGTCTATATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACTTCGATTTATTCAAAATATCATTGTAAAAAAATTGTAGTTTGTAGTCTTTAAAGTCAAATCTAAAAATCTTCATATCTCGGCTCCAAATTATCGTATAACACCATTTTTCGACTGAAATTTCTGAAAAATTTTGTAGTTTGTAGTCTTACACAGGATTCGCCATTATCCGTTCAAGAATCGGGCGGTGCGGTGGGTTTGTTGATGTGATGGGCGGAATTTTTTGATATAGACTGTGGAACATCTGG</canonical_amplicon>
		<polymorphic_amplicon>AACTTCGATTTATTCAAAATATCATTGTAAAAAAATTGTAGTTTGTAGTCTTTAAAGTCAAATCTAAAAATCTTCATATCTCGGCTCCAAATTATCGTATAACACCATTTTTCGACTGAAATTTCTGAAAAATTTTGTAGTTTGTAGTCTTACACAGGATTCGCCATTRTCCGTTCAAGAATCGGGCGGTGCGGTGGGTTTGTTGATGTGATGGGCGGAATTTTTTGATATAGACTGTGGAACATCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23753</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>341407</contig_pos>
        <strand>+</strand>
        <context>TTGAGTTTCA[A/G]AGATAATCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTAATTTTCGAAAATTTCCGTTTTTTTTTTCGGTTTTTTTTGAGTTTCA</left_flank>
        <right_flank>AGATAATCTATTCCGATTTTGATGCTACAAATGAGCTTAAATACGAATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATGAAATTTGAATTTTTGCGAATTCCGCGGCGCCGACGGTGTCAATGGAAGCGGCGAGATTCGTCGAAGACTATTCATGTACACGTATCTGCAAAAATTGAGGAATTTGAGGGAAAAAAAGGAGAAAGCGGGAAATTTTTAGGATTTTTCCGGGTTACGGTAAGTTGAAAAGTACGCAAACACCGATAGAACCCAGAATCCTCAATTTTTGAGTTTCTAGAACGCATTTTTGATTTGCAGATCATTTGCGATGTTGGAAACGCGTTAAAACGTCTCTGACACTCAAGAAACCGAATTTTCCGGGTTACGGTAGGTTGAAAAGTACGCAAACACCGATGGAGTCAGAAGTCTCTAGTTTTTGAGTTTCTAGACCGCATCTTTGAGGAAATCTGAAATTTTGAACATTTTTGTACAGACCTTGTGTGATTTTTTCGATTTTCGGGATTTTTTAATTTTCGAAAATTTCCGTTTTTTTTTTCGGTTTTTTTTGAGTTTCAAAGATAATCTATTCCGATTTTGATGCTACAAATGAGCTTAAATACGAATTCTCAGCATAAAAACCCTAAAACTAGAGATTTCTGGCTCCATCGGTGTTTGCGTCCTTTTCAACCTACCGTAACCCGAAAAATTCGGGGTTTTTGAGTTTCAGAGACATTTTAACGCGTTTTTAACATCGCAAATGATCTCCAAATCAAAAATTCGGTATAGAAACTCAAAAACTAAGGATTCTGGGTTTCATCGGTGTTTGCGTACTTTTCAACCTACCGTAACCCGGAAGAAATCCAAACATTTCAAAATAACGCTAGAAACTTCTAGCTTTCGGCGCCAGGGACCCAAATTTTGCGGGGAATTCGATTTTTAGCATTTCAAAACGTTTCAAAAATCGGGCAGATTCGGAAAAGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAATACGGTTTTTCCATATTTTCAGACATTTTCCTTTGAAATGTAATCCAAAAATTCATCT</canonical>
            <polymorphic>TAATGAAATTTGAATTTTTGCGAATTCCGCGGCGCCGACGGTGTCAATGGAAGCGGCGAGATTCGTCGAAGACTATTCATGTACACGTATCTGCAAAAATTGAGGAATTTGAGGGAAAAAAAGGAGAAAGCGGGAAATTTTTAGGATTTTTCCGGGTTACGGTAAGTTGAAAAGTACGCAAACACCGATAGAACCCAGAATCCTCAATTTTTGAGTTTCTAGAACGCATTTTTGATTTGCAGATCATTTGCGATGTTGGAAACGCGTTAAAACGTCTCTGACACTCAAGAAACCGAATTTTCCGGGTTACGGTAGGTTGAAAAGTACGCAAACACCGATGGAGTCAGAAGTCTCTAGTTTTTGAGTTTCTAGACCGCATCTTTGAGGAAATCTGAAATTTTGAACATTTTTGTACAGACCTTGTGTGATTTTTTCGATTTTCGGGATTTTTTAATTTTCGAAAATTTCCGTTTTTTTTTTCGGTTTTTTTTGAGTTTCARAGATAATCTATTCCGATTTTGATGCTACAAATGAGCTTAAATACGAATTCTCAGCATAAAAACCCTAAAACTAGAGATTTCTGGCTCCATCGGTGTTTGCGTCCTTTTCAACCTACCGTAACCCGAAAAATTCGGGGTTTTTGAGTTTCAGAGACATTTTAACGCGTTTTTAACATCGCAAATGATCTCCAAATCAAAAATTCGGTATAGAAACTCAAAAACTAAGGATTCTGGGTTTCATCGGTGTTTGCGTACTTTTCAACCTACCGTAACCCGGAAGAAATCCAAACATTTCAAAATAACGCTAGAAACTTCTAGCTTTCGGCGCCAGGGACCCAAATTTTGCGGGGAATTCGATTTTTAGCATTTCAAAACGTTTCAAAAATCGGGCAGATTCGGAAAAGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAATACGGTTTTTCCATATTTTCAGACATTTTCCTTTGAAATGTAATCCAAAAATTCATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTACAGACCTTGTGTGATT</pcr_primer_p1>
		<pcr_primer_p2>AATATGCTAAAAACTCAAAATTCA</pcr_primer_p2>
		<pcr_amplicon_size>521</pcr_amplicon_size>
		<canonical_amplicon>TTTGTACAGACCTTGTGTGATTTTTTCGATTTTCGGGATTTTTTAATTTTCGAAAATTTCCGTTTTTTTTTTCGGTTTTTTTTGAGTTTCAAAGATAATCTATTCCGATTTTGATGCTACAAATGAGCTTAAATACGAATTCTCAGCATAAAAACCCTAAAACTAGAGATTTCTGGCTCCATCGGTGTTTGCGTCCTTTTCAACCTACCGTAACCCGAAAAATTCGGGGTTTTTGAGTTTCAGAGACATTTTAACGCGTTTTTAACATCGCAAATGATCTCCAAATCAAAAATTCGGTATAGAAACTCAAAAACTAAGGATTCTGGGTTTCATCGGTGTTTGCGTACTTTTCAACCTACCGTAACCCGGAAGAAATCCAAACATTTCAAAATAACGCTAGAAACTTCTAGCTTTCGGCGCCAGGGACCCAAATTTTGCGGGGAATTCGATTTTTAGCATTTCAAAACGTTTCAAAAATCGGGCAGATTCGGAAAAGCTGAATTTTGAGTTTTTAGCATATT</canonical_amplicon>
		<polymorphic_amplicon>TTTGTACAGACCTTGTGTGATTTTTTCGATTTTCGGGATTTTTTAATTTTCGAAAATTTCCGTTTTTTTTTTCGGTTTTTTTTGAGTTTCARAGATAATCTATTCCGATTTTGATGCTACAAATGAGCTTAAATACGAATTCTCAGCATAAAAACCCTAAAACTAGAGATTTCTGGCTCCATCGGTGTTTGCGTCCTTTTCAACCTACCGTAACCCGAAAAATTCGGGGTTTTTGAGTTTCAGAGACATTTTAACGCGTTTTTAACATCGCAAATGATCTCCAAATCAAAAATTCGGTATAGAAACTCAAAAACTAAGGATTCTGGGTTTCATCGGTGTTTGCGTACTTTTCAACCTACCGTAACCCGGAAGAAATCCAAACATTTCAAAATAACGCTAGAAACTTCTAGCTTTCGGCGCCAGGGACCCAAATTTTGCGGGGAATTCGATTTTTAGCATTTCAAAACGTTTCAAAAATCGGGCAGATTCGGAAAAGCTGAATTTTGAGTTTTTAGCATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23754</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>341769</contig_pos>
        <strand>+</strand>
        <context>attcGATTTT[G/T]AGCATTTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTCTAGCTTTCGGCGCCAGGGACCCAAATTTTGCGGGGAATTCGATTTT</left_flank>
        <right_flank>AGCATTTCAAAACGTTTCAAAAATCGGGCAGATTCGGAAAAGCTGAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTTTCTAGACCGCATCTTTGAGGAAATCTGAAATTTTGAACATTTTTGTACAGACCTTGTGTGATTTTTTCGATTTTCGGGATTTTTTAATTTTCGAAAATTTCCGTTTTTTTTTTCGGTTTTTTTTGAGTTTCAAAGATAATCTATTCCGATTTTGATGCTACAAATGAGCTTAAATACGAATTCTCAGCATAAAAACCCTAAAACTAGAGATTTCTGGCTCCATCGGTGTTTGCGTCCTTTTCAACCTACCGTAACCCGAAAAATTCGGGGTTTTTGAGTTTCAGAGACATTTTAACGCGTTTTTAACATCGCAAATGATCTCCAAATCAAAAATTCGGTATAGAAACTCAAAAACTAAGGATTCTGGGTTTCATCGGTGTTTGCGTACTTTTCAACCTACCGTAACCCGGAAGAAATCCAAACATTTCAAAATAACGCTAGAAACTTCTAGCTTTCGGCGCCAGGGACCCAAATTTTGCGGGGAATTCGATTTTTAGCATTTCAAAACGTTTCAAAAATCGGGCAGATTCGGAAAAGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAATACGGTTTTTCCATATTTTCAGACATTTTCCTTTGAAATGTAATCCAAAAATTCATCTTTCAAGGAATTTCCCCAAGATTTCTTGGTTTTTATGCGCTAAAAACAAAGTTTTCTGAGATTTCCACCCCCACACACTTCGACTAAACTTCAATTTTCCAGCTTTTTCAATAGAATTTGTGAATTTCAGGCATCTTCAAGCAAAATTTCAGTGATTTTTGAGAATTTTTCCATAGAAAAAAGCTCTAATATTGAGAAAATTGAGGTGAAACATTTTTTTTTGTTCAAACTTTCAGATTTTTCCAGAAAATTTCAGACCAAACTTTAGCAATTTTTCCTGCTAAAGCCGAGTAAAAAGCCTTTTTGAAGTTTTTTGACAGCTAATGTTTCATTTTTATACATTTTCCAGAAATTTTTAACTCC</canonical>
            <polymorphic>GAGTTTCTAGACCGCATCTTTGAGGAAATCTGAAATTTTGAACATTTTTGTACAGACCTTGTGTGATTTTTTCGATTTTCGGGATTTTTTAATTTTCGAAAATTTCCGTTTTTTTTTTCGGTTTTTTTTGAGTTTCAAAGATAATCTATTCCGATTTTGATGCTACAAATGAGCTTAAATACGAATTCTCAGCATAAAAACCCTAAAACTAGAGATTTCTGGCTCCATCGGTGTTTGCGTCCTTTTCAACCTACCGTAACCCGAAAAATTCGGGGTTTTTGAGTTTCAGAGACATTTTAACGCGTTTTTAACATCGCAAATGATCTCCAAATCAAAAATTCGGTATAGAAACTCAAAAACTAAGGATTCTGGGTTTCATCGGTGTTTGCGTACTTTTCAACCTACCGTAACCCGGAAGAAATCCAAACATTTCAAAATAACGCTAGAAACTTCTAGCTTTCGGCGCCAGGGACCCAAATTTTGCGGGGAATTCGATTTTKAGCATTTCAAAACGTTTCAAAAATCGGGCAGATTCGGAAAAGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAATACGGTTTTTCCATATTTTCAGACATTTTCCTTTGAAATGTAATCCAAAAATTCATCTTTCAAGGAATTTCCCCAAGATTTCTTGGTTTTTATGCGCTAAAAACAAAGTTTTCTGAGATTTCCACCCCCACACACTTCGACTAAACTTCAATTTTCCAGCTTTTTCAATAGAATTTGTGAATTTCAGGCATCTTCAAGCAAAATTTCAGTGATTTTTGAGAATTTTTCCATAGAAAAAAGCTCTAATATTGAGAAAATTGAGGTGAAACATTTTTTTTTGTTCAAACTTTCAGATTTTTCCAGAAAATTTCAGACCAAACTTTAGCAATTTTTCCTGCTAAAGCCGAGTAAAAAGCCTTTTTGAAGTTTTTTGACAGCTAATGTTTCATTTTTATACATTTTCCAGAAATTTTTAACTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATTTTGATGCTACAAATG</pcr_primer_p1>
		<pcr_primer_p2>AATATGCTAAAAACTCAAAATTCA</pcr_primer_p2>
		<pcr_amplicon_size>416</pcr_amplicon_size>
		<canonical_amplicon>CGATTTTGATGCTACAAATGAGCTTAAATACGAATTCTCAGCATAAAAACCCTAAAACTAGAGATTTCTGGCTCCATCGGTGTTTGCGTCCTTTTCAACCTACCGTAACCCGAAAAATTCGGGGTTTTTGAGTTTCAGAGACATTTTAACGCGTTTTTAACATCGCAAATGATCTCCAAATCAAAAATTCGGTATAGAAACTCAAAAACTAAGGATTCTGGGTTTCATCGGTGTTTGCGTACTTTTCAACCTACCGTAACCCGGAAGAAATCCAAACATTTCAAAATAACGCTAGAAACTTCTAGCTTTCGGCGCCAGGGACCCAAATTTTGCGGGGAATTCGATTTTTAGCATTTCAAAACGTTTCAAAAATCGGGCAGATTCGGAAAAGCTGAATTTTGAGTTTTTAGCATATT</canonical_amplicon>
		<polymorphic_amplicon>CGATTTTGATGCTACAAATGAGCTTAAATACGAATTCTCAGCATAAAAACCCTAAAACTAGAGATTTCTGGCTCCATCGGTGTTTGCGTCCTTTTCAACCTACCGTAACCCGAAAAATTCGGGGTTTTTGAGTTTCAGAGACATTTTAACGCGTTTTTAACATCGCAAATGATCTCCAAATCAAAAATTCGGTATAGAAACTCAAAAACTAAGGATTCTGGGTTTCATCGGTGTTTGCGTACTTTTCAACCTACCGTAACCCGGAAGAAATCCAAACATTTCAAAATAACGCTAGAAACTTCTAGCTTTCGGCGCCAGGGACCCAAATTTTGCGGGGAATTCGATTTTKAGCATTTCAAAACGTTTCAAAAATCGGGCAGATTCGGAAAAGCTGAATTTTGAGTTTTTAGCATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23755</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>341781</contig_pos>
        <strand>+</strand>
        <context>GCATTTCAAA[A/C]CGTTTCAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGCGCCAGGGACCCAAATTTTGCGGGGAATTCGATTTTTAGCATTTCAAA</left_flank>
        <right_flank>CGTTTCAAAAATCGGGCAGATTCGGAAAAGCTGAATTTTGAGTTTTTAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCATCTTTGAGGAAATCTGAAATTTTGAACATTTTTGTACAGACCTTGTGTGATTTTTTCGATTTTCGGGATTTTTTAATTTTCGAAAATTTCCGTTTTTTTTTTCGGTTTTTTTTGAGTTTCAAAGATAATCTATTCCGATTTTGATGCTACAAATGAGCTTAAATACGAATTCTCAGCATAAAAACCCTAAAACTAGAGATTTCTGGCTCCATCGGTGTTTGCGTCCTTTTCAACCTACCGTAACCCGAAAAATTCGGGGTTTTTGAGTTTCAGAGACATTTTAACGCGTTTTTAACATCGCAAATGATCTCCAAATCAAAAATTCGGTATAGAAACTCAAAAACTAAGGATTCTGGGTTTCATCGGTGTTTGCGTACTTTTCAACCTACCGTAACCCGGAAGAAATCCAAACATTTCAAAATAACGCTAGAAACTTCTAGCTTTCGGCGCCAGGGACCCAAATTTTGCGGGGAATTCGATTTTTAGCATTTCAAAACGTTTCAAAAATCGGGCAGATTCGGAAAAGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAATACGGTTTTTCCATATTTTCAGACATTTTCCTTTGAAATGTAATCCAAAAATTCATCTTTCAAGGAATTTCCCCAAGATTTCTTGGTTTTTATGCGCTAAAAACAAAGTTTTCTGAGATTTCCACCCCCACACACTTCGACTAAACTTCAATTTTCCAGCTTTTTCAATAGAATTTGTGAATTTCAGGCATCTTCAAGCAAAATTTCAGTGATTTTTGAGAATTTTTCCATAGAAAAAAGCTCTAATATTGAGAAAATTGAGGTGAAACATTTTTTTTTGTTCAAACTTTCAGATTTTTCCAGAAAATTTCAGACCAAACTTTAGCAATTTTTCCTGCTAAAGCCGAGTAAAAAGCCTTTTTGAAGTTTTTTGACAGCTAATGTTTCATTTTTATACATTTTCCAGAAATTTTTAACTCCAAATTAAATTTT</canonical>
            <polymorphic>CGCATCTTTGAGGAAATCTGAAATTTTGAACATTTTTGTACAGACCTTGTGTGATTTTTTCGATTTTCGGGATTTTTTAATTTTCGAAAATTTCCGTTTTTTTTTTCGGTTTTTTTTGAGTTTCAAAGATAATCTATTCCGATTTTGATGCTACAAATGAGCTTAAATACGAATTCTCAGCATAAAAACCCTAAAACTAGAGATTTCTGGCTCCATCGGTGTTTGCGTCCTTTTCAACCTACCGTAACCCGAAAAATTCGGGGTTTTTGAGTTTCAGAGACATTTTAACGCGTTTTTAACATCGCAAATGATCTCCAAATCAAAAATTCGGTATAGAAACTCAAAAACTAAGGATTCTGGGTTTCATCGGTGTTTGCGTACTTTTCAACCTACCGTAACCCGGAAGAAATCCAAACATTTCAAAATAACGCTAGAAACTTCTAGCTTTCGGCGCCAGGGACCCAAATTTTGCGGGGAATTCGATTTTTAGCATTTCAAAMCGTTTCAAAAATCGGGCAGATTCGGAAAAGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAATACGGTTTTTCCATATTTTCAGACATTTTCCTTTGAAATGTAATCCAAAAATTCATCTTTCAAGGAATTTCCCCAAGATTTCTTGGTTTTTATGCGCTAAAAACAAAGTTTTCTGAGATTTCCACCCCCACACACTTCGACTAAACTTCAATTTTCCAGCTTTTTCAATAGAATTTGTGAATTTCAGGCATCTTCAAGCAAAATTTCAGTGATTTTTGAGAATTTTTCCATAGAAAAAAGCTCTAATATTGAGAAAATTGAGGTGAAACATTTTTTTTTGTTCAAACTTTCAGATTTTTCCAGAAAATTTCAGACCAAACTTTAGCAATTTTTCCTGCTAAAGCCGAGTAAAAAGCCTTTTTGAAGTTTTTTGACAGCTAATGTTTCATTTTTATACATTTTCCAGAAATTTTTAACTCCAAATTAAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATTTTGATGCTACAAATG</pcr_primer_p1>
		<pcr_primer_p2>AATATGCTAAAAACTCAAAATTCA</pcr_primer_p2>
		<pcr_amplicon_size>416</pcr_amplicon_size>
		<canonical_amplicon>CGATTTTGATGCTACAAATGAGCTTAAATACGAATTCTCAGCATAAAAACCCTAAAACTAGAGATTTCTGGCTCCATCGGTGTTTGCGTCCTTTTCAACCTACCGTAACCCGAAAAATTCGGGGTTTTTGAGTTTCAGAGACATTTTAACGCGTTTTTAACATCGCAAATGATCTCCAAATCAAAAATTCGGTATAGAAACTCAAAAACTAAGGATTCTGGGTTTCATCGGTGTTTGCGTACTTTTCAACCTACCGTAACCCGGAAGAAATCCAAACATTTCAAAATAACGCTAGAAACTTCTAGCTTTCGGCGCCAGGGACCCAAATTTTGCGGGGAATTCGATTTTTAGCATTTCAAAACGTTTCAAAAATCGGGCAGATTCGGAAAAGCTGAATTTTGAGTTTTTAGCATATT</canonical_amplicon>
		<polymorphic_amplicon>CGATTTTGATGCTACAAATGAGCTTAAATACGAATTCTCAGCATAAAAACCCTAAAACTAGAGATTTCTGGCTCCATCGGTGTTTGCGTCCTTTTCAACCTACCGTAACCCGAAAAATTCGGGGTTTTTGAGTTTCAGAGACATTTTAACGCGTTTTTAACATCGCAAATGATCTCCAAATCAAAAATTCGGTATAGAAACTCAAAAACTAAGGATTCTGGGTTTCATCGGTGTTTGCGTACTTTTCAACCTACCGTAACCCGGAAGAAATCCAAACATTTCAAAATAACGCTAGAAACTTCTAGCTTTCGGCGCCAGGGACCCAAATTTTGCGGGGAATTCGATTTTTAGCATTTCAAAMCGTTTCAAAAATCGGGCAGATTCGGAAAAGCTGAATTTTGAGTTTTTAGCATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23756</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>341809</contig_pos>
        <strand>+</strand>
        <context>AGATTCGGAA[A/G]AGCTGAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCGATTTTTAGCATTTCAAAACGTTTCAAAAATCGGGCAGATTCGGAA</left_flank>
        <right_flank>AGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAATACGGTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACATTTTTGTACAGACCTTGTGTGATTTTTTCGATTTTCGGGATTTTTTAATTTTCGAAAATTTCCGTTTTTTTTTTCGGTTTTTTTTGAGTTTCAAAGATAATCTATTCCGATTTTGATGCTACAAATGAGCTTAAATACGAATTCTCAGCATAAAAACCCTAAAACTAGAGATTTCTGGCTCCATCGGTGTTTGCGTCCTTTTCAACCTACCGTAACCCGAAAAATTCGGGGTTTTTGAGTTTCAGAGACATTTTAACGCGTTTTTAACATCGCAAATGATCTCCAAATCAAAAATTCGGTATAGAAACTCAAAAACTAAGGATTCTGGGTTTCATCGGTGTTTGCGTACTTTTCAACCTACCGTAACCCGGAAGAAATCCAAACATTTCAAAATAACGCTAGAAACTTCTAGCTTTCGGCGCCAGGGACCCAAATTTTGCGGGGAATTCGATTTTTAGCATTTCAAAACGTTTCAAAAATCGGGCAGATTCGGAAAAGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAATACGGTTTTTCCATATTTTCAGACATTTTCCTTTGAAATGTAATCCAAAAATTCATCTTTCAAGGAATTTCCCCAAGATTTCTTGGTTTTTATGCGCTAAAAACAAAGTTTTCTGAGATTTCCACCCCCACACACTTCGACTAAACTTCAATTTTCCAGCTTTTTCAATAGAATTTGTGAATTTCAGGCATCTTCAAGCAAAATTTCAGTGATTTTTGAGAATTTTTCCATAGAAAAAAGCTCTAATATTGAGAAAATTGAGGTGAAACATTTTTTTTTGTTCAAACTTTCAGATTTTTCCAGAAAATTTCAGACCAAACTTTAGCAATTTTTCCTGCTAAAGCCGAGTAAAAAGCCTTTTTGAAGTTTTTTGACAGCTAATGTTTCATTTTTATACATTTTCCAGAAATTTTTAACTCCAAATTAAATTTTTCTCAAAATTTTCAAGAAAAAACTAACT</canonical>
            <polymorphic>AACATTTTTGTACAGACCTTGTGTGATTTTTTCGATTTTCGGGATTTTTTAATTTTCGAAAATTTCCGTTTTTTTTTTCGGTTTTTTTTGAGTTTCAAAGATAATCTATTCCGATTTTGATGCTACAAATGAGCTTAAATACGAATTCTCAGCATAAAAACCCTAAAACTAGAGATTTCTGGCTCCATCGGTGTTTGCGTCCTTTTCAACCTACCGTAACCCGAAAAATTCGGGGTTTTTGAGTTTCAGAGACATTTTAACGCGTTTTTAACATCGCAAATGATCTCCAAATCAAAAATTCGGTATAGAAACTCAAAAACTAAGGATTCTGGGTTTCATCGGTGTTTGCGTACTTTTCAACCTACCGTAACCCGGAAGAAATCCAAACATTTCAAAATAACGCTAGAAACTTCTAGCTTTCGGCGCCAGGGACCCAAATTTTGCGGGGAATTCGATTTTTAGCATTTCAAAACGTTTCAAAAATCGGGCAGATTCGGAARAGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAATACGGTTTTTCCATATTTTCAGACATTTTCCTTTGAAATGTAATCCAAAAATTCATCTTTCAAGGAATTTCCCCAAGATTTCTTGGTTTTTATGCGCTAAAAACAAAGTTTTCTGAGATTTCCACCCCCACACACTTCGACTAAACTTCAATTTTCCAGCTTTTTCAATAGAATTTGTGAATTTCAGGCATCTTCAAGCAAAATTTCAGTGATTTTTGAGAATTTTTCCATAGAAAAAAGCTCTAATATTGAGAAAATTGAGGTGAAACATTTTTTTTTGTTCAAACTTTCAGATTTTTCCAGAAAATTTCAGACCAAACTTTAGCAATTTTTCCTGCTAAAGCCGAGTAAAAAGCCTTTTTGAAGTTTTTTGACAGCTAATGTTTCATTTTTATACATTTTCCAGAAATTTTTAACTCCAAATTAAATTTTTCTCAAAATTTTCAAGAAAAAACTAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATTTTGATGCTACAAATG</pcr_primer_p1>
		<pcr_primer_p2>ATGAATTTTTGGATTACATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>485</pcr_amplicon_size>
		<canonical_amplicon>CGATTTTGATGCTACAAATGAGCTTAAATACGAATTCTCAGCATAAAAACCCTAAAACTAGAGATTTCTGGCTCCATCGGTGTTTGCGTCCTTTTCAACCTACCGTAACCCGAAAAATTCGGGGTTTTTGAGTTTCAGAGACATTTTAACGCGTTTTTAACATCGCAAATGATCTCCAAATCAAAAATTCGGTATAGAAACTCAAAAACTAAGGATTCTGGGTTTCATCGGTGTTTGCGTACTTTTCAACCTACCGTAACCCGGAAGAAATCCAAACATTTCAAAATAACGCTAGAAACTTCTAGCTTTCGGCGCCAGGGACCCAAATTTTGCGGGGAATTCGATTTTTAGCATTTCAAAACGTTTCAAAAATCGGGCAGATTCGGAAAAGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAATACGGTTTTTCCATATTTTCAGACATTTTCCTTTGAAATGTAATCCAAAAATTCAT</canonical_amplicon>
		<polymorphic_amplicon>CGATTTTGATGCTACAAATGAGCTTAAATACGAATTCTCAGCATAAAAACCCTAAAACTAGAGATTTCTGGCTCCATCGGTGTTTGCGTCCTTTTCAACCTACCGTAACCCGAAAAATTCGGGGTTTTTGAGTTTCAGAGACATTTTAACGCGTTTTTAACATCGCAAATGATCTCCAAATCAAAAATTCGGTATAGAAACTCAAAAACTAAGGATTCTGGGTTTCATCGGTGTTTGCGTACTTTTCAACCTACCGTAACCCGGAAGAAATCCAAACATTTCAAAATAACGCTAGAAACTTCTAGCTTTCGGCGCCAGGGACCCAAATTTTGCGGGGAATTCGATTTTTAGCATTTCAAAACGTTTCAAAAATCGGGCAGATTCGGAARAGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAATACGGTTTTTCCATATTTTCAGACATTTTCCTTTGAAATGTAATCCAAAAATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23757</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>341850</contig_pos>
        <strand>+</strand>
        <context>CAGAAAAAAA[G/T]ACKGTTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATTCGGAAAAGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAA</left_flank>
        <right_flank>ACGGTTTTTCCATATTTTCAGACATTTTCCTTTGAAATGTAATCCAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATTTTTTAATTTTCGAAAATTTCCGTTTTTTTTTTCGGTTTTTTTTGAGTTTCAAAGATAATCTATTCCGATTTTGATGCTACAAATGAGCTTAAATACGAATTCTCAGCATAAAAACCCTAAAACTAGAGATTTCTGGCTCCATCGGTGTTTGCGTCCTTTTCAACCTACCGTAACCCGAAAAATTCGGGGTTTTTGAGTTTCAGAGACATTTTAACGCGTTTTTAACATCGCAAATGATCTCCAAATCAAAAATTCGGTATAGAAACTCAAAAACTAAGGATTCTGGGTTTCATCGGTGTTTGCGTACTTTTCAACCTACCGTAACCCGGAAGAAATCCAAACATTTCAAAATAACGCTAGAAACTTCTAGCTTTCGGCGCCAGGGACCCAAATTTTGCGGGGAATTCGATTTTTAGCATTTCAAAACGTTTCAAAAATCGGGCAGATTCGGAAAAGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAATACGGTTTTTCCATATTTTCAGACATTTTCCTTTGAAATGTAATCCAAAAATTCATCTTTCAAGGAATTTCCCCAAGATTTCTTGGTTTTTATGCGCTAAAAACAAAGTTTTCTGAGATTTCCACCCCCACACACTTCGACTAAACTTCAATTTTCCAGCTTTTTCAATAGAATTTGTGAATTTCAGGCATCTTCAAGCAAAATTTCAGTGATTTTTGAGAATTTTTCCATAGAAAAAAGCTCTAATATTGAGAAAATTGAGGTGAAACATTTTTTTTTGTTCAAACTTTCAGATTTTTCCAGAAAATTTCAGACCAAACTTTAGCAATTTTTCCTGCTAAAGCCGAGTAAAAAGCCTTTTTGAAGTTTTTTGACAGCTAATGTTTCATTTTTATACATTTTCCAGAAATTTTTAACTCCAAATTAAATTTTTCTCAAAATTTTCAAGAAAAAACTAACTAAAATGTCTTGTTTTACCTGCTAAAAACGATGAACAACGCC</canonical>
            <polymorphic>GGATTTTTTAATTTTCGAAAATTTCCGTTTTTTTTTTCGGTTTTTTTTGAGTTTCAAAGATAATCTATTCCGATTTTGATGCTACAAATGAGCTTAAATACGAATTCTCAGCATAAAAACCCTAAAACTAGAGATTTCTGGCTCCATCGGTGTTTGCGTCCTTTTCAACCTACCGTAACCCGAAAAATTCGGGGTTTTTGAGTTTCAGAGACATTTTAACGCGTTTTTAACATCGCAAATGATCTCCAAATCAAAAATTCGGTATAGAAACTCAAAAACTAAGGATTCTGGGTTTCATCGGTGTTTGCGTACTTTTCAACCTACCGTAACCCGGAAGAAATCCAAACATTTCAAAATAACGCTAGAAACTTCTAGCTTTCGGCGCCAGGGACCCAAATTTTGCGGGGAATTCGATTTTTAGCATTTCAAAACGTTTCAAAAATCGGGCAGATTCGGAAAAGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAAKACGGTTTTTCCATATTTTCAGACATTTTCCTTTGAAATGTAATCCAAAAATTCATCTTTCAAGGAATTTCCCCAAGATTTCTTGGTTTTTATGCGCTAAAAACAAAGTTTTCTGAGATTTCCACCCCCACACACTTCGACTAAACTTCAATTTTCCAGCTTTTTCAATAGAATTTGTGAATTTCAGGCATCTTCAAGCAAAATTTCAGTGATTTTTGAGAATTTTTCCATAGAAAAAAGCTCTAATATTGAGAAAATTGAGGTGAAACATTTTTTTTTGTTCAAACTTTCAGATTTTTCCAGAAAATTTCAGACCAAACTTTAGCAATTTTTCCTGCTAAAGCCGAGTAAAAAGCCTTTTTGAAGTTTTTTGACAGCTAATGTTTCATTTTTATACATTTTCCAGAAATTTTTAACTCCAAATTAAATTTTTCTCAAAATTTTCAAGAAAAAACTAACTAAAATGTCTTGTTTTACCTGCTAAAAACGATGAACAACGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATTTTGATGCTACAAATG</pcr_primer_p1>
		<pcr_primer_p2>ATGAATTTTTGGATTACATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>485</pcr_amplicon_size>
		<canonical_amplicon>CGATTTTGATGCTACAAATGAGCTTAAATACGAATTCTCAGCATAAAAACCCTAAAACTAGAGATTTCTGGCTCCATCGGTGTTTGCGTCCTTTTCAACCTACCGTAACCCGAAAAATTCGGGGTTTTTGAGTTTCAGAGACATTTTAACGCGTTTTTAACATCGCAAATGATCTCCAAATCAAAAATTCGGTATAGAAACTCAAAAACTAAGGATTCTGGGTTTCATCGGTGTTTGCGTACTTTTCAACCTACCGTAACCCGGAAGAAATCCAAACATTTCAAAATAACGCTAGAAACTTCTAGCTTTCGGCGCCAGGGACCCAAATTTTGCGGGGAATTCGATTTTTAGCATTTCAAAACGTTTCAAAAATCGGGCAGATTCGGAAAAGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAATACGGTTTTTCCATATTTTCAGACATTTTCCTTTGAAATGTAATCCAAAAATTCAT</canonical_amplicon>
		<polymorphic_amplicon>CGATTTTGATGCTACAAATGAGCTTAAATACGAATTCTCAGCATAAAAACCCTAAAACTAGAGATTTCTGGCTCCATCGGTGTTTGCGTCCTTTTCAACCTACCGTAACCCGAAAAATTCGGGGTTTTTGAGTTTCAGAGACATTTTAACGCGTTTTTAACATCGCAAATGATCTCCAAATCAAAAATTCGGTATAGAAACTCAAAAACTAAGGATTCTGGGTTTCATCGGTGTTTGCGTACTTTTCAACCTACCGTAACCCGGAAGAAATCCAAACATTTCAAAATAACGCTAGAAACTTCTAGCTTTCGGCGCCAGGGACCCAAATTTTGCGGGGAATTCGATTTTTAGCATTTCAAAACGTTTCAAAAATCGGGCAGATTCGGAAAAGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAAKACGGTTTTTCCATATTTTCAGACATTTTCCTTTGAAATGTAATCCAAAAATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23758</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>341853</contig_pos>
        <strand>+</strand>
        <context>AAAAAAAKAC[G/T]GTTTTTCCAY</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGGAAAAGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAATAC</left_flank>
        <right_flank>GTTTTTCCATATTTTCAGACATTTTCCTTTGAAATGTAATCCAAAAATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTAATTTTCGAAAATTTCCGTTTTTTTTTTCGGTTTTTTTTGAGTTTCAAAGATAATCTATTCCGATTTTGATGCTACAAATGAGCTTAAATACGAATTCTCAGCATAAAAACCCTAAAACTAGAGATTTCTGGCTCCATCGGTGTTTGCGTCCTTTTCAACCTACCGTAACCCGAAAAATTCGGGGTTTTTGAGTTTCAGAGACATTTTAACGCGTTTTTAACATCGCAAATGATCTCCAAATCAAAAATTCGGTATAGAAACTCAAAAACTAAGGATTCTGGGTTTCATCGGTGTTTGCGTACTTTTCAACCTACCGTAACCCGGAAGAAATCCAAACATTTCAAAATAACGCTAGAAACTTCTAGCTTTCGGCGCCAGGGACCCAAATTTTGCGGGGAATTCGATTTTTAGCATTTCAAAACGTTTCAAAAATCGGGCAGATTCGGAAAAGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAATACGGTTTTTCCATATTTTCAGACATTTTCCTTTGAAATGTAATCCAAAAATTCATCTTTCAAGGAATTTCCCCAAGATTTCTTGGTTTTTATGCGCTAAAAACAAAGTTTTCTGAGATTTCCACCCCCACACACTTCGACTAAACTTCAATTTTCCAGCTTTTTCAATAGAATTTGTGAATTTCAGGCATCTTCAAGCAAAATTTCAGTGATTTTTGAGAATTTTTCCATAGAAAAAAGCTCTAATATTGAGAAAATTGAGGTGAAACATTTTTTTTTGTTCAAACTTTCAGATTTTTCCAGAAAATTTCAGACCAAACTTTAGCAATTTTTCCTGCTAAAGCCGAGTAAAAAGCCTTTTTGAAGTTTTTTGACAGCTAATGTTTCATTTTTATACATTTTCCAGAAATTTTTAACTCCAAATTAAATTTTTCTCAAAATTTTCAAGAAAAAACTAACTAAAATGTCTTGTTTTACCTGCTAAAAACGATGAACAACGCCCGA</canonical>
            <polymorphic>TTTTTTAATTTTCGAAAATTTCCGTTTTTTTTTTCGGTTTTTTTTGAGTTTCAAAGATAATCTATTCCGATTTTGATGCTACAAATGAGCTTAAATACGAATTCTCAGCATAAAAACCCTAAAACTAGAGATTTCTGGCTCCATCGGTGTTTGCGTCCTTTTCAACCTACCGTAACCCGAAAAATTCGGGGTTTTTGAGTTTCAGAGACATTTTAACGCGTTTTTAACATCGCAAATGATCTCCAAATCAAAAATTCGGTATAGAAACTCAAAAACTAAGGATTCTGGGTTTCATCGGTGTTTGCGTACTTTTCAACCTACCGTAACCCGGAAGAAATCCAAACATTTCAAAATAACGCTAGAAACTTCTAGCTTTCGGCGCCAGGGACCCAAATTTTGCGGGGAATTCGATTTTTAGCATTTCAAAACGTTTCAAAAATCGGGCAGATTCGGAAAAGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAATACKGTTTTTCCATATTTTCAGACATTTTCCTTTGAAATGTAATCCAAAAATTCATCTTTCAAGGAATTTCCCCAAGATTTCTTGGTTTTTATGCGCTAAAAACAAAGTTTTCTGAGATTTCCACCCCCACACACTTCGACTAAACTTCAATTTTCCAGCTTTTTCAATAGAATTTGTGAATTTCAGGCATCTTCAAGCAAAATTTCAGTGATTTTTGAGAATTTTTCCATAGAAAAAAGCTCTAATATTGAGAAAATTGAGGTGAAACATTTTTTTTTGTTCAAACTTTCAGATTTTTCCAGAAAATTTCAGACCAAACTTTAGCAATTTTTCCTGCTAAAGCCGAGTAAAAAGCCTTTTTGAAGTTTTTTGACAGCTAATGTTTCATTTTTATACATTTTCCAGAAATTTTTAACTCCAAATTAAATTTTTCTCAAAATTTTCAAGAAAAAACTAACTAAAATGTCTTGTTTTACCTGCTAAAAACGATGAACAACGCCCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATTTTGATGCTACAAATG</pcr_primer_p1>
		<pcr_primer_p2>GAAAGATGAATTTTTGGATTACA</pcr_primer_p2>
		<pcr_amplicon_size>490</pcr_amplicon_size>
		<canonical_amplicon>CGATTTTGATGCTACAAATGAGCTTAAATACGAATTCTCAGCATAAAAACCCTAAAACTAGAGATTTCTGGCTCCATCGGTGTTTGCGTCCTTTTCAACCTACCGTAACCCGAAAAATTCGGGGTTTTTGAGTTTCAGAGACATTTTAACGCGTTTTTAACATCGCAAATGATCTCCAAATCAAAAATTCGGTATAGAAACTCAAAAACTAAGGATTCTGGGTTTCATCGGTGTTTGCGTACTTTTCAACCTACCGTAACCCGGAAGAAATCCAAACATTTCAAAATAACGCTAGAAACTTCTAGCTTTCGGCGCCAGGGACCCAAATTTTGCGGGGAATTCGATTTTTAGCATTTCAAAACGTTTCAAAAATCGGGCAGATTCGGAAAAGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAATACGGTTTTTCCATATTTTCAGACATTTTCCTTTGAAATGTAATCCAAAAATTCATCTTTC</canonical_amplicon>
		<polymorphic_amplicon>CGATTTTGATGCTACAAATGAGCTTAAATACGAATTCTCAGCATAAAAACCCTAAAACTAGAGATTTCTGGCTCCATCGGTGTTTGCGTCCTTTTCAACCTACCGTAACCCGAAAAATTCGGGGTTTTTGAGTTTCAGAGACATTTTAACGCGTTTTTAACATCGCAAATGATCTCCAAATCAAAAATTCGGTATAGAAACTCAAAAACTAAGGATTCTGGGTTTCATCGGTGTTTGCGTACTTTTCAACCTACCGTAACCCGGAAGAAATCCAAACATTTCAAAATAACGCTAGAAACTTCTAGCTTTCGGCGCCAGGGACCCAAATTTTGCGGGGAATTCGATTTTTAGCATTTCAAAACGTTTCAAAAATCGGGCAGATTCGGAAAAGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAATACKGTTTTTCCATATTTTCAGACATTTTCCTTTGAAATGTAATCCAAAAATTCATCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23759</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>341863</contig_pos>
        <strand>+</strand>
        <context>KGTTTTTCCA[C/T]ATTTTCAGAY</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAATACGGTTTTTCCA</left_flank>
        <right_flank>ATTTTCAGACATTTTCCTTTGAAATGTAATCCAAAAATTCATCTTTCAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGAAAATTTCCGTTTTTTTTTTCGGTTTTTTTTGAGTTTCAAAGATAATCTATTCCGATTTTGATGCTACAAATGAGCTTAAATACGAATTCTCAGCATAAAAACCCTAAAACTAGAGATTTCTGGCTCCATCGGTGTTTGCGTCCTTTTCAACCTACCGTAACCCGAAAAATTCGGGGTTTTTGAGTTTCAGAGACATTTTAACGCGTTTTTAACATCGCAAATGATCTCCAAATCAAAAATTCGGTATAGAAACTCAAAAACTAAGGATTCTGGGTTTCATCGGTGTTTGCGTACTTTTCAACCTACCGTAACCCGGAAGAAATCCAAACATTTCAAAATAACGCTAGAAACTTCTAGCTTTCGGCGCCAGGGACCCAAATTTTGCGGGGAATTCGATTTTTAGCATTTCAAAACGTTTCAAAAATCGGGCAGATTCGGAAAAGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAATACGGTTTTTCCATATTTTCAGACATTTTCCTTTGAAATGTAATCCAAAAATTCATCTTTCAAGGAATTTCCCCAAGATTTCTTGGTTTTTATGCGCTAAAAACAAAGTTTTCTGAGATTTCCACCCCCACACACTTCGACTAAACTTCAATTTTCCAGCTTTTTCAATAGAATTTGTGAATTTCAGGCATCTTCAAGCAAAATTTCAGTGATTTTTGAGAATTTTTCCATAGAAAAAAGCTCTAATATTGAGAAAATTGAGGTGAAACATTTTTTTTTGTTCAAACTTTCAGATTTTTCCAGAAAATTTCAGACCAAACTTTAGCAATTTTTCCTGCTAAAGCCGAGTAAAAAGCCTTTTTGAAGTTTTTTGACAGCTAATGTTTCATTTTTATACATTTTCCAGAAATTTTTAACTCCAAATTAAATTTTTCTCAAAATTTTCAAGAAAAAACTAACTAAAATGTCTTGTTTTACCTGCTAAAAACGATGAACAACGCCCGAAACCAGACGA</canonical>
            <polymorphic>TTCGAAAATTTCCGTTTTTTTTTTCGGTTTTTTTTGAGTTTCAAAGATAATCTATTCCGATTTTGATGCTACAAATGAGCTTAAATACGAATTCTCAGCATAAAAACCCTAAAACTAGAGATTTCTGGCTCCATCGGTGTTTGCGTCCTTTTCAACCTACCGTAACCCGAAAAATTCGGGGTTTTTGAGTTTCAGAGACATTTTAACGCGTTTTTAACATCGCAAATGATCTCCAAATCAAAAATTCGGTATAGAAACTCAAAAACTAAGGATTCTGGGTTTCATCGGTGTTTGCGTACTTTTCAACCTACCGTAACCCGGAAGAAATCCAAACATTTCAAAATAACGCTAGAAACTTCTAGCTTTCGGCGCCAGGGACCCAAATTTTGCGGGGAATTCGATTTTTAGCATTTCAAAACGTTTCAAAAATCGGGCAGATTCGGAAAAGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAATACGGTTTTTCCAYATTTTCAGACATTTTCCTTTGAAATGTAATCCAAAAATTCATCTTTCAAGGAATTTCCCCAAGATTTCTTGGTTTTTATGCGCTAAAAACAAAGTTTTCTGAGATTTCCACCCCCACACACTTCGACTAAACTTCAATTTTCCAGCTTTTTCAATAGAATTTGTGAATTTCAGGCATCTTCAAGCAAAATTTCAGTGATTTTTGAGAATTTTTCCATAGAAAAAAGCTCTAATATTGAGAAAATTGAGGTGAAACATTTTTTTTTGTTCAAACTTTCAGATTTTTCCAGAAAATTTCAGACCAAACTTTAGCAATTTTTCCTGCTAAAGCCGAGTAAAAAGCCTTTTTGAAGTTTTTTGACAGCTAATGTTTCATTTTTATACATTTTCCAGAAATTTTTAACTCCAAATTAAATTTTTCTCAAAATTTTCAAGAAAAAACTAACTAAAATGTCTTGTTTTACCTGCTAAAAACGATGAACAACGCCCGAAACCAGACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTGAATTTTGAGTTTTTAGC</pcr_primer_p1>
		<pcr_primer_p2>ACTGAAATTTTGCTTGAAGATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAATACGGTTTTTCCATATTTTCAGACATTTTCCTTTGAAATGTAATCCAAAAATTCATCTTTCAAGGAATTTCCCCAAGATTTCTTGGTTTTTATGCGCTAAAAACAAAGTTTTCTGAGATTTCCACCCCCACACACTTCGACTAAACTTCAATTTTCCAGCTTTTTCAATAGAATTTGTGAATTTCAGGCATCTTCAAGCAAAATTTCAGT</canonical_amplicon>
		<polymorphic_amplicon>AGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAATACGGTTTTTCCAYATTTTCAGACATTTTCCTTTGAAATGTAATCCAAAAATTCATCTTTCAAGGAATTTCCCCAAGATTTCTTGGTTTTTATGCGCTAAAAACAAAGTTTTCTGAGATTTCCACCCCCACACACTTCGACTAAACTTCAATTTTCCAGCTTTTTCAATAGAATTTGTGAATTTCAGGCATCTTCAAGCAAAATTTCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23760</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>341873</contig_pos>
        <strand>+</strand>
        <context>YATTTTCAGA[C/T]ATTTTCCTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTTTAGCATATTTCTCAGAAAAAAATACGGTTTTTCCATATTTTCAGA</left_flank>
        <right_flank>ATTTTCCTTTGAAATGTAATCCAAAAATTCATCTTTCAAGGAATTTCCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCGTTTTTTTTTTCGGTTTTTTTTGAGTTTCAAAGATAATCTATTCCGATTTTGATGCTACAAATGAGCTTAAATACGAATTCTCAGCATAAAAACCCTAAAACTAGAGATTTCTGGCTCCATCGGTGTTTGCGTCCTTTTCAACCTACCGTAACCCGAAAAATTCGGGGTTTTTGAGTTTCAGAGACATTTTAACGCGTTTTTAACATCGCAAATGATCTCCAAATCAAAAATTCGGTATAGAAACTCAAAAACTAAGGATTCTGGGTTTCATCGGTGTTTGCGTACTTTTCAACCTACCGTAACCCGGAAGAAATCCAAACATTTCAAAATAACGCTAGAAACTTCTAGCTTTCGGCGCCAGGGACCCAAATTTTGCGGGGAATTCGATTTTTAGCATTTCAAAACGTTTCAAAAATCGGGCAGATTCGGAAAAGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAATACGGTTTTTCCATATTTTCAGACATTTTCCTTTGAAATGTAATCCAAAAATTCATCTTTCAAGGAATTTCCCCAAGATTTCTTGGTTTTTATGCGCTAAAAACAAAGTTTTCTGAGATTTCCACCCCCACACACTTCGACTAAACTTCAATTTTCCAGCTTTTTCAATAGAATTTGTGAATTTCAGGCATCTTCAAGCAAAATTTCAGTGATTTTTGAGAATTTTTCCATAGAAAAAAGCTCTAATATTGAGAAAATTGAGGTGAAACATTTTTTTTTGTTCAAACTTTCAGATTTTTCCAGAAAATTTCAGACCAAACTTTAGCAATTTTTCCTGCTAAAGCCGAGTAAAAAGCCTTTTTGAAGTTTTTTGACAGCTAATGTTTCATTTTTATACATTTTCCAGAAATTTTTAACTCCAAATTAAATTTTTCTCAAAATTTTCAAGAAAAAACTAACTAAAATGTCTTGTTTTACCTGCTAAAAACGATGAACAACGCCCGAAACCAGACGAATTGCGATCG</canonical>
            <polymorphic>TCCGTTTTTTTTTTCGGTTTTTTTTGAGTTTCAAAGATAATCTATTCCGATTTTGATGCTACAAATGAGCTTAAATACGAATTCTCAGCATAAAAACCCTAAAACTAGAGATTTCTGGCTCCATCGGTGTTTGCGTCCTTTTCAACCTACCGTAACCCGAAAAATTCGGGGTTTTTGAGTTTCAGAGACATTTTAACGCGTTTTTAACATCGCAAATGATCTCCAAATCAAAAATTCGGTATAGAAACTCAAAAACTAAGGATTCTGGGTTTCATCGGTGTTTGCGTACTTTTCAACCTACCGTAACCCGGAAGAAATCCAAACATTTCAAAATAACGCTAGAAACTTCTAGCTTTCGGCGCCAGGGACCCAAATTTTGCGGGGAATTCGATTTTTAGCATTTCAAAACGTTTCAAAAATCGGGCAGATTCGGAAAAGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAATACGGTTTTTCCATATTTTCAGAYATTTTCCTTTGAAATGTAATCCAAAAATTCATCTTTCAAGGAATTTCCCCAAGATTTCTTGGTTTTTATGCGCTAAAAACAAAGTTTTCTGAGATTTCCACCCCCACACACTTCGACTAAACTTCAATTTTCCAGCTTTTTCAATAGAATTTGTGAATTTCAGGCATCTTCAAGCAAAATTTCAGTGATTTTTGAGAATTTTTCCATAGAAAAAAGCTCTAATATTGAGAAAATTGAGGTGAAACATTTTTTTTTGTTCAAACTTTCAGATTTTTCCAGAAAATTTCAGACCAAACTTTAGCAATTTTTCCTGCTAAAGCCGAGTAAAAAGCCTTTTTGAAGTTTTTTGACAGCTAATGTTTCATTTTTATACATTTTCCAGAAATTTTTAACTCCAAATTAAATTTTTCTCAAAATTTTCAAGAAAAAACTAACTAAAATGTCTTGTTTTACCTGCTAAAAACGATGAACAACGCCCGAAACCAGACGAATTGCGATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTGAATTTTGAGTTTTTAGC</pcr_primer_p1>
		<pcr_primer_p2>ACTGAAATTTTGCTTGAAGATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAATACGGTTTTTCCATATTTTCAGACATTTTCCTTTGAAATGTAATCCAAAAATTCATCTTTCAAGGAATTTCCCCAAGATTTCTTGGTTTTTATGCGCTAAAAACAAAGTTTTCTGAGATTTCCACCCCCACACACTTCGACTAAACTTCAATTTTCCAGCTTTTTCAATAGAATTTGTGAATTTCAGGCATCTTCAAGCAAAATTTCAGT</canonical_amplicon>
		<polymorphic_amplicon>AGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAATACGGTTTTTCCATATTTTCAGAYATTTTCCTTTGAAATGTAATCCAAAAATTCATCTTTCAAGGAATTTCCCCAAGATTTCTTGGTTTTTATGCGCTAAAAACAAAGTTTTCTGAGATTTCCACCCCCACACACTTCGACTAAACTTCAATTTTCCAGCTTTTTCAATAGAATTTGTGAATTTCAGGCATCTTCAAGCAAAATTTCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23761</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>341920</contig_pos>
        <strand>+</strand>
        <context>CAAGGAATTT[C/T]CCCAAGATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGACATTTTCCTTTGAAATGTAATCCAAAAATTCATCTTTCAAGGAATTT</left_flank>
        <right_flank>CCCAAGATTTCTTGGTTTTTATGCGCTAAAAACAAAGTTTTCTGAGATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATTTTGATGCTACAAATGAGCTTAAATACGAATTCTCAGCATAAAAACCCTAAAACTAGAGATTTCTGGCTCCATCGGTGTTTGCGTCCTTTTCAACCTACCGTAACCCGAAAAATTCGGGGTTTTTGAGTTTCAGAGACATTTTAACGCGTTTTTAACATCGCAAATGATCTCCAAATCAAAAATTCGGTATAGAAACTCAAAAACTAAGGATTCTGGGTTTCATCGGTGTTTGCGTACTTTTCAACCTACCGTAACCCGGAAGAAATCCAAACATTTCAAAATAACGCTAGAAACTTCTAGCTTTCGGCGCCAGGGACCCAAATTTTGCGGGGAATTCGATTTTTAGCATTTCAAAACGTTTCAAAAATCGGGCAGATTCGGAAAAGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAATACGGTTTTTCCATATTTTCAGACATTTTCCTTTGAAATGTAATCCAAAAATTCATCTTTCAAGGAATTTCCCCAAGATTTCTTGGTTTTTATGCGCTAAAAACAAAGTTTTCTGAGATTTCCACCCCCACACACTTCGACTAAACTTCAATTTTCCAGCTTTTTCAATAGAATTTGTGAATTTCAGGCATCTTCAAGCAAAATTTCAGTGATTTTTGAGAATTTTTCCATAGAAAAAAGCTCTAATATTGAGAAAATTGAGGTGAAACATTTTTTTTTGTTCAAACTTTCAGATTTTTCCAGAAAATTTCAGACCAAACTTTAGCAATTTTTCCTGCTAAAGCCGAGTAAAAAGCCTTTTTGAAGTTTTTTGACAGCTAATGTTTCATTTTTATACATTTTCCAGAAATTTTTAACTCCAAATTAAATTTTTCTCAAAATTTTCAAGAAAAAACTAACTAAAATGTCTTGTTTTACCTGCTAAAAACGATGAACAACGCCCGAAACCAGACGAATTGCGATCGATGAGCCCACATAGCTCTCCAACACGCGGCGACATCCCGGAAACGAG</canonical>
            <polymorphic>CGATTTTGATGCTACAAATGAGCTTAAATACGAATTCTCAGCATAAAAACCCTAAAACTAGAGATTTCTGGCTCCATCGGTGTTTGCGTCCTTTTCAACCTACCGTAACCCGAAAAATTCGGGGTTTTTGAGTTTCAGAGACATTTTAACGCGTTTTTAACATCGCAAATGATCTCCAAATCAAAAATTCGGTATAGAAACTCAAAAACTAAGGATTCTGGGTTTCATCGGTGTTTGCGTACTTTTCAACCTACCGTAACCCGGAAGAAATCCAAACATTTCAAAATAACGCTAGAAACTTCTAGCTTTCGGCGCCAGGGACCCAAATTTTGCGGGGAATTCGATTTTTAGCATTTCAAAACGTTTCAAAAATCGGGCAGATTCGGAAAAGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAATACGGTTTTTCCATATTTTCAGACATTTTCCTTTGAAATGTAATCCAAAAATTCATCTTTCAAGGAATTTYCCCAAGATTTCTTGGTTTTTATGCGCTAAAAACAAAGTTTTCTGAGATTTCCACCCCCACACACTTCGACTAAACTTCAATTTTCCAGCTTTTTCAATAGAATTTGTGAATTTCAGGCATCTTCAAGCAAAATTTCAGTGATTTTTGAGAATTTTTCCATAGAAAAAAGCTCTAATATTGAGAAAATTGAGGTGAAACATTTTTTTTTGTTCAAACTTTCAGATTTTTCCAGAAAATTTCAGACCAAACTTTAGCAATTTTTCCTGCTAAAGCCGAGTAAAAAGCCTTTTTGAAGTTTTTTGACAGCTAATGTTTCATTTTTATACATTTTCCAGAAATTTTTAACTCCAAATTAAATTTTTCTCAAAATTTTCAAGAAAAAACTAACTAAAATGTCTTGTTTTACCTGCTAAAAACGATGAACAACGCCCGAAACCAGACGAATTGCGATCGATGAGCCCACATAGCTCTCCAACACGCGGCGACATCCCGGAAACGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTGAATTTTGAGTTTTTAGC</pcr_primer_p1>
		<pcr_primer_p2>ACTGAAATTTTGCTTGAAGATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAATACGGTTTTTCCATATTTTCAGACATTTTCCTTTGAAATGTAATCCAAAAATTCATCTTTCAAGGAATTTCCCCAAGATTTCTTGGTTTTTATGCGCTAAAAACAAAGTTTTCTGAGATTTCCACCCCCACACACTTCGACTAAACTTCAATTTTCCAGCTTTTTCAATAGAATTTGTGAATTTCAGGCATCTTCAAGCAAAATTTCAGT</canonical_amplicon>
		<polymorphic_amplicon>AGCTGAATTTTGAGTTTTTAGCATATTTCTCAGAAAAAAATACGGTTTTTCCATATTTTCAGACATTTTCCTTTGAAATGTAATCCAAAAATTCATCTTTCAAGGAATTTYCCCAAGATTTCTTGGTTTTTATGCGCTAAAAACAAAGTTTTCTGAGATTTCCACCCCCACACACTTCGACTAAACTTCAATTTTCCAGCTTTTTCAATAGAATTTGTGAATTTCAGGCATCTTCAAGCAAAATTTCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23762</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>348416</contig_pos>
        <strand>+</strand>
        <context>AATCTGAAAT[A/T]TYAAAAAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGTTTTCAGAGATTTCAGAAATTCTAGAAAAGTCAGAGAAATCTGAAAT</left_flank>
        <right_flank>TCAAAAAAGAAAAAAAAGATTGTCAAAAAATGTCCCATTATCAGTGAAAA</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAAACTATAAATTTTGGTCGGATTTATTAGATTTTCTTTTAAAAATATACACCTTTTCAAGATGTAATTTTGACAAACCACAACCAATTGAGCCAATTTTTACCTGATTTTCTTCAATTTTCTGACAATTTCCCCCCGTTTTTCTGCTCCTCTTCAGTGACACCCGTCTTCGTTTCGATACTTTTAATAAACTCCTCAAATGTCTGTGAATTTGCGCTCTGTGGCAATCGAATCGAATCGCCAAACGCCGTTTTCATCGCAGCGCCAAACTGGCGAGGAGTGTTCACTTGGAGCAGTGCAGACACCCCAACGATGAGCAATGTGAATCCGGATACGGTGATTACTGTAGCCACGCCGAGCGCCTTTCCAGCGAATGCAGCTCCGGAGAAGAGCTGCAATTTTTGGGATTCTTTAGAAGTCATTTTTTCAGAGAATCTAGCATTTTCAGTGTTTTCAGAGATTTCAGAAATTCTAGAAAAGTCAGAGAAATCTGAAATTTCAAAAAAGAAAAAAAAGATTGTCAAAAAATGTCCCATTATCAGTGAAAAATGCCAGAAAAACCGTATTTTTCTGAGAATTCAATTTTTTTGGAATTTTTGAAAAATTCTGTATTTTTGAATTGTTCTATACATTTCAAAATAATAACCTGAGCAGCGGCTAAATCAGCGGCTTCTGGCTGTCTTGAGTGCTTCCAGGCACTTCGAATACCCAGAAGAAGTGTGGCGAGCGATGTTCCACCGATTACTGCAAAAATTCCGTTTTTCATAAAGTTTTTACTGAGGCTTAGGAATTTTTGTAGTTTGTAGTTTTGTGTAAAACCTTTTAAAAGCAAATTTAGACCCAAAAACCAGTGAAAACGGTGGGAAATGAAGTGAGTTACAGCGCTTCGAAGTTTTACTGAGGCTTAGACTACAAACTACAAAAATTAAAAAACCGCTGAGACTTGACTAATTTTTAAGCTAGAAAAGCCATTCTTAGCTAGAAATTTTGGGAATTTT</canonical>
            <polymorphic>ATAAAACTATAAATTTTGGTCGGATTTATTAGATTTTCTTTTAAAAATATACACCTTTTCAAGATGTAATTTTGACAAACCACAACCAATTGAGCCAATTTTTACCTGATTTTCTTCAATTTTCTGACAATTTCCCCCCGTTTTTCTGCTCCTCTTCAGTGACACCCGTCTTCGTTTCGATACTTTTAATAAACTCCTCAAATGTCTGTGAATTTGCGCTCTGTGGCAATCGAATCGAATCGCCAAACGCCGTTTTCATCGCAGCGCCAAACTGGCGAGGAGTGTTCACTTGGAGCAGTGCAGACACCCCAACGATGAGCAATGTGAATCCGGATACGGTGATTACTGTAGCCACGCCGAGCGCCTTTCCAGCGAATGCAGCTCCGGAGAAGAGCTGCAATTTTTGGGATTCTTTAGAAGTCATTTTTTCAGAGAATCTAGCATTTTCAGTGTTTTCAGAGATTTCAGAAATTCTAGAAAAGTCAGAGAAATCTGAAATWTCAAAAAAGAAAAAAAAGATTGTCAAAAAATGTCCCATTATCAGTGAAAAATGCCAGAAAAACCGTATTTTTCTGAGAATTCAATTTTTTTGGAATTTTTGAAAAATTCTGTATTTTTGAATTGTTCTATACATTTCAAAATAATAACCTGAGCAGCGGCTAAATCAGCGGCTTCTGGCTGTCTTGAGTGCTTCCAGGCACTTCGAATACCCAGAAGAAGTGTGGCGAGCGATGTTCCACCGATTACTGCAAAAATTCCGTTTTTCATAAAGTTTTTACTGAGGCTTAGGAATTTTTGTAGTTTGTAGTTTTGTGTAAAACCTTTTAAAAGCAAATTTAGACCCAAAAACCAGTGAAAACGGTGGGAAATGAAGTGAGTTACAGCGCTTCGAAGTTTTACTGAGGCTTAGACTACAAACTACAAAAATTAAAAAACCGCTGAGACTTGACTAATTTTTAAGCTAGAAAAGCCATTCTTAGCTAGAAATTTTGGGAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>259 199 152 149 81 43 37 27 16 11 11 9 6</canonical_bands>
                <polymorphic_bands>259 199 152 149 108 43 37 16 11 11 9 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>188 134 92 82 81 71 56 43 37 34 27 26 21 20 15 11 11 11 11 9 9 6 5</canonical_bands>
                <polymorphic_bands>188 134 108 92 82 71 56 43 37 34 26 21 20 15 11 11 11 11 9 9 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGATTCTTTAGAAGTCATTTTT</pcr_primer_p1>
		<pcr_primer_p2>GCTCAGGTTATTATTTTGAAATGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGGATTCTTTAGAAGTCATTTTTTCAGAGAATCTAGCATTTTCAGTGTTTTCAGAGATTTCAGAAATTCTAGAAAAGTCAGAGAAATCTGAAATTTCAAAAAAGAAAAAAAAGATTGTCAAAAAATGTCCCATTATCAGTGAAAAATGCCAGAAAAACCGTATTTTTCTGAGAATTCAATTTTTTTGGAATTTTTGAAAAATTCTGTATTTTTGAATTGTTCTATACATTTCAAAATAATAACCTGAGC</canonical_amplicon>
		<polymorphic_amplicon>GGGATTCTTTAGAAGTCATTTTTTCAGAGAATCTAGCATTTTCAGTGTTTTCAGAGATTTCAGAAATTCTAGAAAAGTCAGAGAAATCTGAAATWTCAAAAAAGAAAAAAAAGATTGTCAAAAAATGTCCCATTATCAGTGAAAAATGCCAGAAAAACCGTATTTTTCTGAGAATTCAATTTTTTTGGAATTTTTGAAAAATTCTGTATTTTTGAATTGTTCTATACATTTCAAAATAATAACCTGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23763</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>348418</contig_pos>
        <strand>+</strand>
        <context>TCTGAAATWT[C/T]AAAAAAGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTTCAGAGATTTCAGAAATTCTAGAAAAGTCAGAGAAATCTGAAATTT</left_flank>
        <right_flank>AAAAAAGAAAAAAAAGATTGTCAAAAAATGTCCCATTATCAGTGAAAAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACTATAAATTTTGGTCGGATTTATTAGATTTTCTTTTAAAAATATACACCTTTTCAAGATGTAATTTTGACAAACCACAACCAATTGAGCCAATTTTTACCTGATTTTCTTCAATTTTCTGACAATTTCCCCCCGTTTTTCTGCTCCTCTTCAGTGACACCCGTCTTCGTTTCGATACTTTTAATAAACTCCTCAAATGTCTGTGAATTTGCGCTCTGTGGCAATCGAATCGAATCGCCAAACGCCGTTTTCATCGCAGCGCCAAACTGGCGAGGAGTGTTCACTTGGAGCAGTGCAGACACCCCAACGATGAGCAATGTGAATCCGGATACGGTGATTACTGTAGCCACGCCGAGCGCCTTTCCAGCGAATGCAGCTCCGGAGAAGAGCTGCAATTTTTGGGATTCTTTAGAAGTCATTTTTTCAGAGAATCTAGCATTTTCAGTGTTTTCAGAGATTTCAGAAATTCTAGAAAAGTCAGAGAAATCTGAAATTTCAAAAAAGAAAAAAAAGATTGTCAAAAAATGTCCCATTATCAGTGAAAAATGCCAGAAAAACCGTATTTTTCTGAGAATTCAATTTTTTTGGAATTTTTGAAAAATTCTGTATTTTTGAATTGTTCTATACATTTCAAAATAATAACCTGAGCAGCGGCTAAATCAGCGGCTTCTGGCTGTCTTGAGTGCTTCCAGGCACTTCGAATACCCAGAAGAAGTGTGGCGAGCGATGTTCCACCGATTACTGCAAAAATTCCGTTTTTCATAAAGTTTTTACTGAGGCTTAGGAATTTTTGTAGTTTGTAGTTTTGTGTAAAACCTTTTAAAAGCAAATTTAGACCCAAAAACCAGTGAAAACGGTGGGAAATGAAGTGAGTTACAGCGCTTCGAAGTTTTACTGAGGCTTAGACTACAAACTACAAAAATTAAAAAACCGCTGAGACTTGACTAATTTTTAAGCTAGAAAAGCCATTCTTAGCTAGAAATTTTGGGAATTTTTA</canonical>
            <polymorphic>AAAACTATAAATTTTGGTCGGATTTATTAGATTTTCTTTTAAAAATATACACCTTTTCAAGATGTAATTTTGACAAACCACAACCAATTGAGCCAATTTTTACCTGATTTTCTTCAATTTTCTGACAATTTCCCCCCGTTTTTCTGCTCCTCTTCAGTGACACCCGTCTTCGTTTCGATACTTTTAATAAACTCCTCAAATGTCTGTGAATTTGCGCTCTGTGGCAATCGAATCGAATCGCCAAACGCCGTTTTCATCGCAGCGCCAAACTGGCGAGGAGTGTTCACTTGGAGCAGTGCAGACACCCCAACGATGAGCAATGTGAATCCGGATACGGTGATTACTGTAGCCACGCCGAGCGCCTTTCCAGCGAATGCAGCTCCGGAGAAGAGCTGCAATTTTTGGGATTCTTTAGAAGTCATTTTTTCAGAGAATCTAGCATTTTCAGTGTTTTCAGAGATTTCAGAAATTCTAGAAAAGTCAGAGAAATCTGAAATTTYAAAAAAGAAAAAAAAGATTGTCAAAAAATGTCCCATTATCAGTGAAAAATGCCAGAAAAACCGTATTTTTCTGAGAATTCAATTTTTTTGGAATTTTTGAAAAATTCTGTATTTTTGAATTGTTCTATACATTTCAAAATAATAACCTGAGCAGCGGCTAAATCAGCGGCTTCTGGCTGTCTTGAGTGCTTCCAGGCACTTCGAATACCCAGAAGAAGTGTGGCGAGCGATGTTCCACCGATTACTGCAAAAATTCCGTTTTTCATAAAGTTTTTACTGAGGCTTAGGAATTTTTGTAGTTTGTAGTTTTGTGTAAAACCTTTTAAAAGCAAATTTAGACCCAAAAACCAGTGAAAACGGTGGGAAATGAAGTGAGTTACAGCGCTTCGAAGTTTTACTGAGGCTTAGACTACAAACTACAAAAATTAAAAAACCGCTGAGACTTGACTAATTTTTAAGCTAGAAAAGCCATTCTTAGCTAGAAATTTTGGGAATTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGATTCTTTAGAAGTCATTTTT</pcr_primer_p1>
		<pcr_primer_p2>GCTCAGGTTATTATTTTGAAATGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGGATTCTTTAGAAGTCATTTTTTCAGAGAATCTAGCATTTTCAGTGTTTTCAGAGATTTCAGAAATTCTAGAAAAGTCAGAGAAATCTGAAATTTCAAAAAAGAAAAAAAAGATTGTCAAAAAATGTCCCATTATCAGTGAAAAATGCCAGAAAAACCGTATTTTTCTGAGAATTCAATTTTTTTGGAATTTTTGAAAAATTCTGTATTTTTGAATTGTTCTATACATTTCAAAATAATAACCTGAGC</canonical_amplicon>
		<polymorphic_amplicon>GGGATTCTTTAGAAGTCATTTTTTCAGAGAATCTAGCATTTTCAGTGTTTTCAGAGATTTCAGAAATTCTAGAAAAGTCAGAGAAATCTGAAATTTYAAAAAAGAAAAAAAAGATTGTCAAAAAATGTCCCATTATCAGTGAAAAATGCCAGAAAAACCGTATTTTTCTGAGAATTCAATTTTTTTGGAATTTTTGAAAAATTCTGTATTTTTGAATTGTTCTATACATTTCAAAATAATAACCTGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23764</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>348540</contig_pos>
        <strand></strand>
        <context>TTTTTGAATT[G/T]KTCTATACAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAGAATTCAATTTTTTTGGAATTTTTGAAAAATTCTGTATTTTTGAATT</left_flank>
        <right_flank>TTCTATACATTTCAAAATAATAACCTGAGCAGCGGCTAAATCAGCGGCTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACAATTTCCCCCCGTTTTTCTGCTCCTCTTCAGTGACACCCGTCTTCGTTTCGATACTTTTAATAAACTCCTCAAATGTCTGTGAATTTGCGCTCTGTGGCAATCGAATCGAATCGCCAAACGCCGTTTTCATCGCAGCGCCAAACTGGCGAGGAGTGTTCACTTGGAGCAGTGCAGACACCCCAACGATGAGCAATGTGAATCCGGATACGGTGATTACTGTAGCCACGCCGAGCGCCTTTCCAGCGAATGCAGCTCCGGAGAAGAGCTGCAATTTTTGGGATTCTTTAGAAGTCATTTTTTCAGAGAATCTAGCATTTTCAGTGTTTTCAGAGATTTCAGAAATTCTAGAAAAGTCAGAGAAATCTGAAATTTCAAAAAAGAAAAAAAAGATTGTCAAAAAATGTCCCATTATCAGTGAAAAATGCCAGAAAAACCGTATTTTTCTGAGAATTCAATTTTTTTGGAATTTTTGAAAAATTCTGTATTTTTGAATTGTTCTATACATTTCAAAATAATAACCTGAGCAGCGGCTAAATCAGCGGCTTCTGGCTGTCTTGAGTGCTTCCAGGCACTTCGAATACCCAGAAGAAGTGTGGCGAGCGATGTTCCACCGATTACTGCAAAAATTCCGTTTTTCATAAAGTTTTTACTGAGGCTTAGGAATTTTTGTAGTTTGTAGTTTTGTGTAAAACCTTTTAAAAGCAAATTTAGACCCAAAAACCAGTGAAAACGGTGGGAAATGAAGTGAGTTACAGCGCTTCGAAGTTTTACTGAGGCTTAGACTACAAACTACAAAAATTAAAAAACCGCTGAGACTTGACTAATTTTTAAGCTAGAAAAGCCATTCTTAGCTAGAAATTTTGGGAATTTTTAATATTTTTAAGTTTTATCGAATTTCAGTTTTCACTGTCACCTGATTTCCAGAATTTACTAGTTTTTCCGATCAAATTCTTGAATTACAGCTCAATTTTGTAGTACGAAATTCCAGTTTTTGG</canonical>
            <polymorphic>TGACAATTTCCCCCCGTTTTTCTGCTCCTCTTCAGTGACACCCGTCTTCGTTTCGATACTTTTAATAAACTCCTCAAATGTCTGTGAATTTGCGCTCTGTGGCAATCGAATCGAATCGCCAAACGCCGTTTTCATCGCAGCGCCAAACTGGCGAGGAGTGTTCACTTGGAGCAGTGCAGACACCCCAACGATGAGCAATGTGAATCCGGATACGGTGATTACTGTAGCCACGCCGAGCGCCTTTCCAGCGAATGCAGCTCCGGAGAAGAGCTGCAATTTTTGGGATTCTTTAGAAGTCATTTTTTCAGAGAATCTAGCATTTTCAGTGTTTTCAGAGATTTCAGAAATTCTAGAAAAGTCAGAGAAATCTGAAATTTCAAAAAAGAAAAAAAAGATTGTCAAAAAATGTCCCATTATCAGTGAAAAATGCCAGAAAAACCGTATTTTTCTGAGAATTCAATTTTTTTGGAATTTTTGAAAAATTCTGTATTTTTGAATTKTTCTATACATTTCAAAATAATAACCTGAGCAGCGGCTAAATCAGCGGCTTCTGGCTGTCTTGAGTGCTTCCAGGCACTTCGAATACCCAGAAGAAGTGTGGCGAGCGATGTTCCACCGATTACTGCAAAAATTCCGTTTTTCATAAAGTTTTTACTGAGGCTTAGGAATTTTTGTAGTTTGTAGTTTTGTGTAAAACCTTTTAAAAGCAAATTTAGACCCAAAAACCAGTGAAAACGGTGGGAAATGAAGTGAGTTACAGCGCTTCGAAGTTTTACTGAGGCTTAGACTACAAACTACAAAAATTAAAAAACCGCTGAGACTTGACTAATTTTTAAGCTAGAAAAGCCATTCTTAGCTAGAAATTTTGGGAATTTTTAATATTTTTAAGTTTTATCGAATTTCAGTTTTCACTGTCACCTGATTTCCAGAATTTACTAGTTTTTCCGATCAAATTCTTGAATTACAGCTCAATTTTGTAGTACGAAATTCCAGTTTTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAAAAGTCAGAGAAATCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TCTTCTGGGTATTCGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TAGAAAAGTCAGAGAAATCTGAAATTTCAAAAAAGAAAAAAAAGATTGTCAAAAAATGTCCCATTATCAGTGAAAAATGCCAGAAAAACCGTATTTTTCTGAGAATTCAATTTTTTTGGAATTTTTGAAAAATTCTGTATTTTTGAATTGTTCTATACATTTCAAAATAATAACCTGAGCAGCGGCTAAATCAGCGGCTTCTGGCTGTCTTGAGTGCTTCCAGGCACTTCGAATACCCAGAAGA</canonical_amplicon>
		<polymorphic_amplicon>TAGAAAAGTCAGAGAAATCTGAAATTTCAAAAAAGAAAAAAAAGATTGTCAAAAAATGTCCCATTATCAGTGAAAAATGCCAGAAAAACCGTATTTTTCTGAGAATTCAATTTTTTTGGAATTTTTGAAAAATTCTGTATTTTTGAATTKTTCTATACATTTCAAAATAATAACCTGAGCAGCGGCTAAATCAGCGGCTTCTGGCTGTCTTGAGTGCTTCCAGGCACTTCGAATACCCAGAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23765</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>348541</contig_pos>
        <strand>+</strand>
        <context>TTTTGAATTK[G/T]TCTATACATT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAGAATTCAATTTTTTTGGAATTTTTGAAAAATTCTGTATTTTTGAATTG</left_flank>
        <right_flank>TCTATACATTTCAAAATAATAACCTGAGCAGCGGCTAAATCAGCGGCTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACAATTTCCCCCCGTTTTTCTGCTCCTCTTCAGTGACACCCGTCTTCGTTTCGATACTTTTAATAAACTCCTCAAATGTCTGTGAATTTGCGCTCTGTGGCAATCGAATCGAATCGCCAAACGCCGTTTTCATCGCAGCGCCAAACTGGCGAGGAGTGTTCACTTGGAGCAGTGCAGACACCCCAACGATGAGCAATGTGAATCCGGATACGGTGATTACTGTAGCCACGCCGAGCGCCTTTCCAGCGAATGCAGCTCCGGAGAAGAGCTGCAATTTTTGGGATTCTTTAGAAGTCATTTTTTCAGAGAATCTAGCATTTTCAGTGTTTTCAGAGATTTCAGAAATTCTAGAAAAGTCAGAGAAATCTGAAATTTCAAAAAAGAAAAAAAAGATTGTCAAAAAATGTCCCATTATCAGTGAAAAATGCCAGAAAAACCGTATTTTTCTGAGAATTCAATTTTTTTGGAATTTTTGAAAAATTCTGTATTTTTGAATTGTTCTATACATTTCAAAATAATAACCTGAGCAGCGGCTAAATCAGCGGCTTCTGGCTGTCTTGAGTGCTTCCAGGCACTTCGAATACCCAGAAGAAGTGTGGCGAGCGATGTTCCACCGATTACTGCAAAAATTCCGTTTTTCATAAAGTTTTTACTGAGGCTTAGGAATTTTTGTAGTTTGTAGTTTTGTGTAAAACCTTTTAAAAGCAAATTTAGACCCAAAAACCAGTGAAAACGGTGGGAAATGAAGTGAGTTACAGCGCTTCGAAGTTTTACTGAGGCTTAGACTACAAACTACAAAAATTAAAAAACCGCTGAGACTTGACTAATTTTTAAGCTAGAAAAGCCATTCTTAGCTAGAAATTTTGGGAATTTTTAATATTTTTAAGTTTTATCGAATTTCAGTTTTCACTGTCACCTGATTTCCAGAATTTACTAGTTTTTCCGATCAAATTCTTGAATTACAGCTCAATTTTGTAGTACGAAATTCCAGTTTTTGGT</canonical>
            <polymorphic>GACAATTTCCCCCCGTTTTTCTGCTCCTCTTCAGTGACACCCGTCTTCGTTTCGATACTTTTAATAAACTCCTCAAATGTCTGTGAATTTGCGCTCTGTGGCAATCGAATCGAATCGCCAAACGCCGTTTTCATCGCAGCGCCAAACTGGCGAGGAGTGTTCACTTGGAGCAGTGCAGACACCCCAACGATGAGCAATGTGAATCCGGATACGGTGATTACTGTAGCCACGCCGAGCGCCTTTCCAGCGAATGCAGCTCCGGAGAAGAGCTGCAATTTTTGGGATTCTTTAGAAGTCATTTTTTCAGAGAATCTAGCATTTTCAGTGTTTTCAGAGATTTCAGAAATTCTAGAAAAGTCAGAGAAATCTGAAATTTCAAAAAAGAAAAAAAAGATTGTCAAAAAATGTCCCATTATCAGTGAAAAATGCCAGAAAAACCGTATTTTTCTGAGAATTCAATTTTTTTGGAATTTTTGAAAAATTCTGTATTTTTGAATTGKTCTATACATTTCAAAATAATAACCTGAGCAGCGGCTAAATCAGCGGCTTCTGGCTGTCTTGAGTGCTTCCAGGCACTTCGAATACCCAGAAGAAGTGTGGCGAGCGATGTTCCACCGATTACTGCAAAAATTCCGTTTTTCATAAAGTTTTTACTGAGGCTTAGGAATTTTTGTAGTTTGTAGTTTTGTGTAAAACCTTTTAAAAGCAAATTTAGACCCAAAAACCAGTGAAAACGGTGGGAAATGAAGTGAGTTACAGCGCTTCGAAGTTTTACTGAGGCTTAGACTACAAACTACAAAAATTAAAAAACCGCTGAGACTTGACTAATTTTTAAGCTAGAAAAGCCATTCTTAGCTAGAAATTTTGGGAATTTTTAATATTTTTAAGTTTTATCGAATTTCAGTTTTCACTGTCACCTGATTTCCAGAATTTACTAGTTTTTCCGATCAAATTCTTGAATTACAGCTCAATTTTGTAGTACGAAATTCCAGTTTTTGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAAAAGTCAGAGAAATCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TCTTCTGGGTATTCGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TAGAAAAGTCAGAGAAATCTGAAATTTCAAAAAAGAAAAAAAAGATTGTCAAAAAATGTCCCATTATCAGTGAAAAATGCCAGAAAAACCGTATTTTTCTGAGAATTCAATTTTTTTGGAATTTTTGAAAAATTCTGTATTTTTGAATTGTTCTATACATTTCAAAATAATAACCTGAGCAGCGGCTAAATCAGCGGCTTCTGGCTGTCTTGAGTGCTTCCAGGCACTTCGAATACCCAGAAGA</canonical_amplicon>
		<polymorphic_amplicon>TAGAAAAGTCAGAGAAATCTGAAATTTCAAAAAAGAAAAAAAAGATTGTCAAAAAATGTCCCATTATCAGTGAAAAATGCCAGAAAAACCGTATTTTTCTGAGAATTCAATTTTTTTGGAATTTTTGAAAAATTCTGTATTTTTGAATTGKTCTATACATTTCAAAATAATAACCTGAGCAGCGGCTAAATCAGCGGCTTCTGGCTGTCTTGAGTGCTTCCAGGCACTTCGAATACCCAGAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23766</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>348577</contig_pos>
        <strand>+</strand>
        <context>GAGCAGCGGC[C/T]AAATCAGCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTATTTTTGAATTGTTCTATACATTTCAAAATAATAACCTGAGCAGCGGC</left_flank>
        <right_flank>AAATCAGCGGCTTCTGGCTGTCTTGAGTGCTTCCAGGCACTTCGAATACC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACCCGTCTTCGTTTCGATACTTTTAATAAACTCCTCAAATGTCTGTGAATTTGCGCTCTGTGGCAATCGAATCGAATCGCCAAACGCCGTTTTCATCGCAGCGCCAAACTGGCGAGGAGTGTTCACTTGGAGCAGTGCAGACACCCCAACGATGAGCAATGTGAATCCGGATACGGTGATTACTGTAGCCACGCCGAGCGCCTTTCCAGCGAATGCAGCTCCGGAGAAGAGCTGCAATTTTTGGGATTCTTTAGAAGTCATTTTTTCAGAGAATCTAGCATTTTCAGTGTTTTCAGAGATTTCAGAAATTCTAGAAAAGTCAGAGAAATCTGAAATTTCAAAAAAGAAAAAAAAGATTGTCAAAAAATGTCCCATTATCAGTGAAAAATGCCAGAAAAACCGTATTTTTCTGAGAATTCAATTTTTTTGGAATTTTTGAAAAATTCTGTATTTTTGAATTGTTCTATACATTTCAAAATAATAACCTGAGCAGCGGCTAAATCAGCGGCTTCTGGCTGTCTTGAGTGCTTCCAGGCACTTCGAATACCCAGAAGAAGTGTGGCGAGCGATGTTCCACCGATTACTGCAAAAATTCCGTTTTTCATAAAGTTTTTACTGAGGCTTAGGAATTTTTGTAGTTTGTAGTTTTGTGTAAAACCTTTTAAAAGCAAATTTAGACCCAAAAACCAGTGAAAACGGTGGGAAATGAAGTGAGTTACAGCGCTTCGAAGTTTTACTGAGGCTTAGACTACAAACTACAAAAATTAAAAAACCGCTGAGACTTGACTAATTTTTAAGCTAGAAAAGCCATTCTTAGCTAGAAATTTTGGGAATTTTTAATATTTTTAAGTTTTATCGAATTTCAGTTTTCACTGTCACCTGATTTCCAGAATTTACTAGTTTTTCCGATCAAATTCTTGAATTACAGCTCAATTTTGTAGTACGAAATTCCAGTTTTTGGTAAAAATCATACTTGTAAAATTCCGGGCCGGCCCGCC</canonical>
            <polymorphic>ACACCCGTCTTCGTTTCGATACTTTTAATAAACTCCTCAAATGTCTGTGAATTTGCGCTCTGTGGCAATCGAATCGAATCGCCAAACGCCGTTTTCATCGCAGCGCCAAACTGGCGAGGAGTGTTCACTTGGAGCAGTGCAGACACCCCAACGATGAGCAATGTGAATCCGGATACGGTGATTACTGTAGCCACGCCGAGCGCCTTTCCAGCGAATGCAGCTCCGGAGAAGAGCTGCAATTTTTGGGATTCTTTAGAAGTCATTTTTTCAGAGAATCTAGCATTTTCAGTGTTTTCAGAGATTTCAGAAATTCTAGAAAAGTCAGAGAAATCTGAAATTTCAAAAAAGAAAAAAAAGATTGTCAAAAAATGTCCCATTATCAGTGAAAAATGCCAGAAAAACCGTATTTTTCTGAGAATTCAATTTTTTTGGAATTTTTGAAAAATTCTGTATTTTTGAATTGTTCTATACATTTCAAAATAATAACCTGAGCAGCGGCYAAATCAGCGGCTTCTGGCTGTCTTGAGTGCTTCCAGGCACTTCGAATACCCAGAAGAAGTGTGGCGAGCGATGTTCCACCGATTACTGCAAAAATTCCGTTTTTCATAAAGTTTTTACTGAGGCTTAGGAATTTTTGTAGTTTGTAGTTTTGTGTAAAACCTTTTAAAAGCAAATTTAGACCCAAAAACCAGTGAAAACGGTGGGAAATGAAGTGAGTTACAGCGCTTCGAAGTTTTACTGAGGCTTAGACTACAAACTACAAAAATTAAAAAACCGCTGAGACTTGACTAATTTTTAAGCTAGAAAAGCCATTCTTAGCTAGAAATTTTGGGAATTTTTAATATTTTTAAGTTTTATCGAATTTCAGTTTTCACTGTCACCTGATTTCCAGAATTTACTAGTTTTTCCGATCAAATTCTTGAATTACAGCTCAATTTTGTAGTACGAAATTCCAGTTTTTGGTAAAAATCATACTTGTAAAATTCCGGGCCGGCCCGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>265 190 121 111 106 60 56 30 13 12 10 9 7 6 4</canonical_bands>
                <polymorphic_bands>277 190 121 111 106 60 56 30 13 10 9 7 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGAAAAGTCAGAGAAATCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TCTTCTGGGTATTCGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TAGAAAAGTCAGAGAAATCTGAAATTTCAAAAAAGAAAAAAAAGATTGTCAAAAAATGTCCCATTATCAGTGAAAAATGCCAGAAAAACCGTATTTTTCTGAGAATTCAATTTTTTTGGAATTTTTGAAAAATTCTGTATTTTTGAATTGTTCTATACATTTCAAAATAATAACCTGAGCAGCGGCTAAATCAGCGGCTTCTGGCTGTCTTGAGTGCTTCCAGGCACTTCGAATACCCAGAAGA</canonical_amplicon>
		<polymorphic_amplicon>TAGAAAAGTCAGAGAAATCTGAAATTTCAAAAAAGAAAAAAAAGATTGTCAAAAAATGTCCCATTATCAGTGAAAAATGCCAGAAAAACCGTATTTTTCTGAGAATTCAATTTTTTTGGAATTTTTGAAAAATTCTGTATTTTTGAATTGTTCTATACATTTCAAAATAATAACCTGAGCAGCGGCYAAATCAGCGGCTTCTGGCTGTCTTGAGTGCTTCCAGGCACTTCGAATACCCAGAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23767</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>348738</contig_pos>
        <strand></strand>
        <context>tgtgtaaaac[C/T]ttttaaaagc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTTTACTGAGGCTTAGGAATTTTTGTAGTTTGTAGTTTTGTGTAAAAC</left_flank>
        <right_flank>TTTTAAAAGCAAATTTAGACCCAAAAACCAGTGAAAACGGTGGGAAATGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGAATCCGGATACGGTGATTACTGTAGCCACGCCGAGCGCCTTTCCAGCGAATGCAGCTCCGGAGAAGAGCTGCAATTTTTGGGATTCTTTAGAAGTCATTTTTTCAGAGAATCTAGCATTTTCAGTGTTTTCAGAGATTTCAGAAATTCTAGAAAAGTCAGAGAAATCTGAAATTTCAAAAAAGAAAAAAAAGATTGTCAAAAAATGTCCCATTATCAGTGAAAAATGCCAGAAAAACCGTATTTTTCTGAGAATTCAATTTTTTTGGAATTTTTGAAAAATTCTGTATTTTTGAATTGTTCTATACATTTCAAAATAATAACCTGAGCAGCGGCTAAATCAGCGGCTTCTGGCTGTCTTGAGTGCTTCCAGGCACTTCGAATACCCAGAAGAAGTGTGGCGAGCGATGTTCCACCGATTACTGCAAAAATTCCGTTTTTCATAAAGTTTTTACTGAGGCTTAGGAATTTTTGTAGTTTGTAGTTTTGTGTAAAACCTTTTAAAAGCAAATTTAGACCCAAAAACCAGTGAAAACGGTGGGAAATGAAGTGAGTTACAGCGCTTCGAAGTTTTACTGAGGCTTAGACTACAAACTACAAAAATTAAAAAACCGCTGAGACTTGACTAATTTTTAAGCTAGAAAAGCCATTCTTAGCTAGAAATTTTGGGAATTTTTAATATTTTTAAGTTTTATCGAATTTCAGTTTTCACTGTCACCTGATTTCCAGAATTTACTAGTTTTTCCGATCAAATTCTTGAATTACAGCTCAATTTTGTAGTACGAAATTCCAGTTTTTGGTAAAAATCATACTTGTAAAATTCCGGGCCGGCCCGCCAAAGCCCGGACCCGGCCCGGAAGGCCCGGTGTCAAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTTTCCATTTTTTTTTCGTATTTCGGATTGTTTGTCTGTCTGATCAAAAAAGATCGAAAAACTCGAAAAAAAATTTTTTGGT</canonical>
            <polymorphic>TGTGAATCCGGATACGGTGATTACTGTAGCCACGCCGAGCGCCTTTCCAGCGAATGCAGCTCCGGAGAAGAGCTGCAATTTTTGGGATTCTTTAGAAGTCATTTTTTCAGAGAATCTAGCATTTTCAGTGTTTTCAGAGATTTCAGAAATTCTAGAAAAGTCAGAGAAATCTGAAATTTCAAAAAAGAAAAAAAAGATTGTCAAAAAATGTCCCATTATCAGTGAAAAATGCCAGAAAAACCGTATTTTTCTGAGAATTCAATTTTTTTGGAATTTTTGAAAAATTCTGTATTTTTGAATTGTTCTATACATTTCAAAATAATAACCTGAGCAGCGGCTAAATCAGCGGCTTCTGGCTGTCTTGAGTGCTTCCAGGCACTTCGAATACCCAGAAGAAGTGTGGCGAGCGATGTTCCACCGATTACTGCAAAAATTCCGTTTTTCATAAAGTTTTTACTGAGGCTTAGGAATTTTTGTAGTTTGTAGTTTTGTGTAAAACYTTTTAAAAGCAAATTTAGACCCAAAAACCAGTGAAAACGGTGGGAAATGAAGTGAGTTACAGCGCTTCGAAGTTTTACTGAGGCTTAGACTACAAACTACAAAAATTAAAAAACCGCTGAGACTTGACTAATTTTTAAGCTAGAAAAGCCATTCTTAGCTAGAAATTTTGGGAATTTTTAATATTTTTAAGTTTTATCGAATTTCAGTTTTCACTGTCACCTGATTTCCAGAATTTACTAGTTTTTCCGATCAAATTCTTGAATTACAGCTCAATTTTGTAGTACGAAATTCCAGTTTTTGGTAAAAATCATACTTGTAAAATTCCGGGCCGGCCCGCCAAAGCCCGGACCCGGCCCGGAAGGCCCGGTGTCAAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTTTCCATTTTTTTTTCGTATTTCGGATTGTTTGTCTGTCTGATCAAAAAAGATCGAAAAACTCGAAAAAAAATTTTTTGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTGCAAAAATTCCGTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTAAGAATGGCTTTTCTAGCTTA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TACTGCAAAAATTCCGTTTTTCATAAAGTTTTTACTGAGGCTTAGGAATTTTTGTAGTTTGTAGTTTTGTGTAAAACCTTTTAAAAGCAAATTTAGACCCAAAAACCAGTGAAAACGGTGGGAAATGAAGTGAGTTACAGCGCTTCGAAGTTTTACTGAGGCTTAGACTACAAACTACAAAAATTAAAAAACCGCTGAGACTTGACTAATTTTTAAGCTAGAAAAGCCATTCTTAG</canonical_amplicon>
		<polymorphic_amplicon>TACTGCAAAAATTCCGTTTTTCATAAAGTTTTTACTGAGGCTTAGGAATTTTTGTAGTTTGTAGTTTTGTGTAAAACYTTTTAAAAGCAAATTTAGACCCAAAAACCAGTGAAAACGGTGGGAAATGAAGTGAGTTACAGCGCTTCGAAGTTTTACTGAGGCTTAGACTACAAACTACAAAAATTAAAAAACCGCTGAGACTTGACTAATTTTTAAGCTAGAAAAGCCATTCTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23768</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>348803</contig_pos>
        <strand></strand>
        <context>agttacagcg[C/T]ttcyaagttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAGACCCAAAAACCAGTGAAAACGGTGGGAAATGAAGTGAGTTACAGCG</left_flank>
        <right_flank>TTCGAAGTTTTACTGAGGCTTAGACTACAAACTACAAAAATTAAAAAACC</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAGAGCTGCAATTTTTGGGATTCTTTAGAAGTCATTTTTTCAGAGAATCTAGCATTTTCAGTGTTTTCAGAGATTTCAGAAATTCTAGAAAAGTCAGAGAAATCTGAAATTTCAAAAAAGAAAAAAAAGATTGTCAAAAAATGTCCCATTATCAGTGAAAAATGCCAGAAAAACCGTATTTTTCTGAGAATTCAATTTTTTTGGAATTTTTGAAAAATTCTGTATTTTTGAATTGTTCTATACATTTCAAAATAATAACCTGAGCAGCGGCTAAATCAGCGGCTTCTGGCTGTCTTGAGTGCTTCCAGGCACTTCGAATACCCAGAAGAAGTGTGGCGAGCGATGTTCCACCGATTACTGCAAAAATTCCGTTTTTCATAAAGTTTTTACTGAGGCTTAGGAATTTTTGTAGTTTGTAGTTTTGTGTAAAACCTTTTAAAAGCAAATTTAGACCCAAAAACCAGTGAAAACGGTGGGAAATGAAGTGAGTTACAGCGCTTCGAAGTTTTACTGAGGCTTAGACTACAAACTACAAAAATTAAAAAACCGCTGAGACTTGACTAATTTTTAAGCTAGAAAAGCCATTCTTAGCTAGAAATTTTGGGAATTTTTAATATTTTTAAGTTTTATCGAATTTCAGTTTTCACTGTCACCTGATTTCCAGAATTTACTAGTTTTTCCGATCAAATTCTTGAATTACAGCTCAATTTTGTAGTACGAAATTCCAGTTTTTGGTAAAAATCATACTTGTAAAATTCCGGGCCGGCCCGCCAAAGCCCGGACCCGGCCCGGAAGGCCCGGTGTCAAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTTTCCATTTTTTTTTCGTATTTCGGATTGTTTGTCTGTCTGATCAAAAAAGATCGAAAAACTCGAAAAAAAATTTTTTGGTCGAAAAAAATCACATAAGGGTCCCCCCTTATGTGTTTTTTGAAAATTTCTAAACTAGTGAAATGA</canonical>
            <polymorphic>AGAAGAGCTGCAATTTTTGGGATTCTTTAGAAGTCATTTTTTCAGAGAATCTAGCATTTTCAGTGTTTTCAGAGATTTCAGAAATTCTAGAAAAGTCAGAGAAATCTGAAATTTCAAAAAAGAAAAAAAAGATTGTCAAAAAATGTCCCATTATCAGTGAAAAATGCCAGAAAAACCGTATTTTTCTGAGAATTCAATTTTTTTGGAATTTTTGAAAAATTCTGTATTTTTGAATTGTTCTATACATTTCAAAATAATAACCTGAGCAGCGGCTAAATCAGCGGCTTCTGGCTGTCTTGAGTGCTTCCAGGCACTTCGAATACCCAGAAGAAGTGTGGCGAGCGATGTTCCACCGATTACTGCAAAAATTCCGTTTTTCATAAAGTTTTTACTGAGGCTTAGGAATTTTTGTAGTTTGTAGTTTTGTGTAAAACCTTTTAAAAGCAAATTTAGACCCAAAAACCAGTGAAAACGGTGGGAAATGAAGTGAGTTACAGCGYTTCGAAGTTTTACTGAGGCTTAGACTACAAACTACAAAAATTAAAAAACCGCTGAGACTTGACTAATTTTTAAGCTAGAAAAGCCATTCTTAGCTAGAAATTTTGGGAATTTTTAATATTTTTAAGTTTTATCGAATTTCAGTTTTCACTGTCACCTGATTTCCAGAATTTACTAGTTTTTCCGATCAAATTCTTGAATTACAGCTCAATTTTGTAGTACGAAATTCCAGTTTTTGGTAAAAATCATACTTGTAAAATTCCGGGCCGGCCCGCCAAAGCCCGGACCCGGCCCGGAAGGCCCGGTGTCAAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTTTCCATTTTTTTTTCGTATTTCGGATTGTTTGTCTGTCTGATCAAAAAAGATCGAAAAACTCGAAAAAAAATTTTTTGGTCGAAAAAAATCACATAAGGGTCCCCCCTTATGTGTTTTTTGAAAATTTCTAAACTAGTGAAATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCGCT</site>
                <isoschizomers>
                    <enzyme>AfeI</enzyme>
                    <enzyme>Aor51HI</enzyme>
                    <enzyme>Eco47III</enzyme>
                    <enzyme>FunI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACTGCAAAAATTCCGTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTAAGAATGGCTTTTCTAGCTTA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TACTGCAAAAATTCCGTTTTTCATAAAGTTTTTACTGAGGCTTAGGAATTTTTGTAGTTTGTAGTTTTGTGTAAAACCTTTTAAAAGCAAATTTAGACCCAAAAACCAGTGAAAACGGTGGGAAATGAAGTGAGTTACAGCGCTTCGAAGTTTTACTGAGGCTTAGACTACAAACTACAAAAATTAAAAAACCGCTGAGACTTGACTAATTTTTAAGCTAGAAAAGCCATTCTTAG</canonical_amplicon>
		<polymorphic_amplicon>TACTGCAAAAATTCCGTTTTTCATAAAGTTTTTACTGAGGCTTAGGAATTTTTGTAGTTTGTAGTTTTGTGTAAAACCTTTTAAAAGCAAATTTAGACCCAAAAACCAGTGAAAACGGTGGGAAATGAAGTGAGTTACAGCGYTTCGAAGTTTTACTGAGGCTTAGACTACAAACTACAAAAATTAAAAAACCGCTGAGACTTGACTAATTTTTAAGCTAGAAAAGCCATTCTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23769</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>348807</contig_pos>
        <strand>+</strand>
        <context>acagcgyttc[C/T]aagttttact</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCCAAAAACCAGTGAAAACGGTGGGAAATGAAGTGAGTTACAGCGCTTC</left_flank>
        <right_flank>AAGTTTTACTGAGGCTTAGACTACAAACTACAAAAATTAAAAAACCGCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGCTGCAATTTTTGGGATTCTTTAGAAGTCATTTTTTCAGAGAATCTAGCATTTTCAGTGTTTTCAGAGATTTCAGAAATTCTAGAAAAGTCAGAGAAATCTGAAATTTCAAAAAAGAAAAAAAAGATTGTCAAAAAATGTCCCATTATCAGTGAAAAATGCCAGAAAAACCGTATTTTTCTGAGAATTCAATTTTTTTGGAATTTTTGAAAAATTCTGTATTTTTGAATTGTTCTATACATTTCAAAATAATAACCTGAGCAGCGGCTAAATCAGCGGCTTCTGGCTGTCTTGAGTGCTTCCAGGCACTTCGAATACCCAGAAGAAGTGTGGCGAGCGATGTTCCACCGATTACTGCAAAAATTCCGTTTTTCATAAAGTTTTTACTGAGGCTTAGGAATTTTTGTAGTTTGTAGTTTTGTGTAAAACCTTTTAAAAGCAAATTTAGACCCAAAAACCAGTGAAAACGGTGGGAAATGAAGTGAGTTACAGCGCTTCGAAGTTTTACTGAGGCTTAGACTACAAACTACAAAAATTAAAAAACCGCTGAGACTTGACTAATTTTTAAGCTAGAAAAGCCATTCTTAGCTAGAAATTTTGGGAATTTTTAATATTTTTAAGTTTTATCGAATTTCAGTTTTCACTGTCACCTGATTTCCAGAATTTACTAGTTTTTCCGATCAAATTCTTGAATTACAGCTCAATTTTGTAGTACGAAATTCCAGTTTTTGGTAAAAATCATACTTGTAAAATTCCGGGCCGGCCCGCCAAAGCCCGGACCCGGCCCGGAAGGCCCGGTGTCAAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTTTCCATTTTTTTTTCGTATTTCGGATTGTTTGTCTGTCTGATCAAAAAAGATCGAAAAACTCGAAAAAAAATTTTTTGGTCGAAAAAAATCACATAAGGGTCCCCCCTTATGTGTTTTTTGAAAATTTCTAAACTAGTGAAATGACGGG</canonical>
            <polymorphic>GAGCTGCAATTTTTGGGATTCTTTAGAAGTCATTTTTTCAGAGAATCTAGCATTTTCAGTGTTTTCAGAGATTTCAGAAATTCTAGAAAAGTCAGAGAAATCTGAAATTTCAAAAAAGAAAAAAAAGATTGTCAAAAAATGTCCCATTATCAGTGAAAAATGCCAGAAAAACCGTATTTTTCTGAGAATTCAATTTTTTTGGAATTTTTGAAAAATTCTGTATTTTTGAATTGTTCTATACATTTCAAAATAATAACCTGAGCAGCGGCTAAATCAGCGGCTTCTGGCTGTCTTGAGTGCTTCCAGGCACTTCGAATACCCAGAAGAAGTGTGGCGAGCGATGTTCCACCGATTACTGCAAAAATTCCGTTTTTCATAAAGTTTTTACTGAGGCTTAGGAATTTTTGTAGTTTGTAGTTTTGTGTAAAACCTTTTAAAAGCAAATTTAGACCCAAAAACCAGTGAAAACGGTGGGAAATGAAGTGAGTTACAGCGCTTCYAAGTTTTACTGAGGCTTAGACTACAAACTACAAAAATTAAAAAACCGCTGAGACTTGACTAATTTTTAAGCTAGAAAAGCCATTCTTAGCTAGAAATTTTGGGAATTTTTAATATTTTTAAGTTTTATCGAATTTCAGTTTTCACTGTCACCTGATTTCCAGAATTTACTAGTTTTTCCGATCAAATTCTTGAATTACAGCTCAATTTTGTAGTACGAAATTCCAGTTTTTGGTAAAAATCATACTTGTAAAATTCCGGGCCGGCCCGCCAAAGCCCGGACCCGGCCCGGAAGGCCCGGTGTCAAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTTTCCATTTTTTTTTCGTATTTCGGATTGTTTGTCTGTCTGATCAAAAAAGATCGAAAAACTCGAAAAAAAATTTTTTGGTCGAAAAAAATCACATAAGGGTCCCCCCTTATGTGTTTTTTGAAAATTTCTAAACTAGTGAAATGACGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 312 186</canonical_bands>
                <polymorphic_bands>688 312</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>313 275 186 130 68 19 9</canonical_bands>
                <polymorphic_bands>316 313 275 68 19 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACTGCAAAAATTCCGTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTAAGAATGGCTTTTCTAGCTTA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TACTGCAAAAATTCCGTTTTTCATAAAGTTTTTACTGAGGCTTAGGAATTTTTGTAGTTTGTAGTTTTGTGTAAAACCTTTTAAAAGCAAATTTAGACCCAAAAACCAGTGAAAACGGTGGGAAATGAAGTGAGTTACAGCGCTTCGAAGTTTTACTGAGGCTTAGACTACAAACTACAAAAATTAAAAAACCGCTGAGACTTGACTAATTTTTAAGCTAGAAAAGCCATTCTTAG</canonical_amplicon>
		<polymorphic_amplicon>TACTGCAAAAATTCCGTTTTTCATAAAGTTTTTACTGAGGCTTAGGAATTTTTGTAGTTTGTAGTTTTGTGTAAAACCTTTTAAAAGCAAATTTAGACCCAAAAACCAGTGAAAACGGTGGGAAATGAAGTGAGTTACAGCGCTTCYAAGTTTTACTGAGGCTTAGACTACAAACTACAAAAATTAAAAAACCGCTGAGACTTGACTAATTTTTAAGCTAGAAAAGCCATTCTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23770</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>348839</contig_pos>
        <strand>+</strand>
        <context>tacaaactac[A/G]aaaATTAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTGAGTTACAGCGCTTCGAAGTTTTACTGAGGCTTAGACTACAAACTAC</left_flank>
        <right_flank>AAAATTAAAAAACCGCTGAGACTTGACTAATTTTTAAGCTAGAAAAGCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTCAGAGAATCTAGCATTTTCAGTGTTTTCAGAGATTTCAGAAATTCTAGAAAAGTCAGAGAAATCTGAAATTTCAAAAAAGAAAAAAAAGATTGTCAAAAAATGTCCCATTATCAGTGAAAAATGCCAGAAAAACCGTATTTTTCTGAGAATTCAATTTTTTTGGAATTTTTGAAAAATTCTGTATTTTTGAATTGTTCTATACATTTCAAAATAATAACCTGAGCAGCGGCTAAATCAGCGGCTTCTGGCTGTCTTGAGTGCTTCCAGGCACTTCGAATACCCAGAAGAAGTGTGGCGAGCGATGTTCCACCGATTACTGCAAAAATTCCGTTTTTCATAAAGTTTTTACTGAGGCTTAGGAATTTTTGTAGTTTGTAGTTTTGTGTAAAACCTTTTAAAAGCAAATTTAGACCCAAAAACCAGTGAAAACGGTGGGAAATGAAGTGAGTTACAGCGCTTCGAAGTTTTACTGAGGCTTAGACTACAAACTACAAAAATTAAAAAACCGCTGAGACTTGACTAATTTTTAAGCTAGAAAAGCCATTCTTAGCTAGAAATTTTGGGAATTTTTAATATTTTTAAGTTTTATCGAATTTCAGTTTTCACTGTCACCTGATTTCCAGAATTTACTAGTTTTTCCGATCAAATTCTTGAATTACAGCTCAATTTTGTAGTACGAAATTCCAGTTTTTGGTAAAAATCATACTTGTAAAATTCCGGGCCGGCCCGCCAAAGCCCGGACCCGGCCCGGAAGGCCCGGTGTCAAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTTTCCATTTTTTTTTCGTATTTCGGATTGTTTGTCTGTCTGATCAAAAAAGATCGAAAAACTCGAAAAAAAATTTTTTGGTCGAAAAAAATCACATAAGGGTCCCCCCTTATGTGTTTTTTGAAAATTTCTAAACTAGTGAAATGACGGGCCCGGGCCGGGCCGGGCCTCCGAAATTCCGGA</canonical>
            <polymorphic>TTTTTTCAGAGAATCTAGCATTTTCAGTGTTTTCAGAGATTTCAGAAATTCTAGAAAAGTCAGAGAAATCTGAAATTTCAAAAAAGAAAAAAAAGATTGTCAAAAAATGTCCCATTATCAGTGAAAAATGCCAGAAAAACCGTATTTTTCTGAGAATTCAATTTTTTTGGAATTTTTGAAAAATTCTGTATTTTTGAATTGTTCTATACATTTCAAAATAATAACCTGAGCAGCGGCTAAATCAGCGGCTTCTGGCTGTCTTGAGTGCTTCCAGGCACTTCGAATACCCAGAAGAAGTGTGGCGAGCGATGTTCCACCGATTACTGCAAAAATTCCGTTTTTCATAAAGTTTTTACTGAGGCTTAGGAATTTTTGTAGTTTGTAGTTTTGTGTAAAACCTTTTAAAAGCAAATTTAGACCCAAAAACCAGTGAAAACGGTGGGAAATGAAGTGAGTTACAGCGCTTCGAAGTTTTACTGAGGCTTAGACTACAAACTACRAAAATTAAAAAACCGCTGAGACTTGACTAATTTTTAAGCTAGAAAAGCCATTCTTAGCTAGAAATTTTGGGAATTTTTAATATTTTTAAGTTTTATCGAATTTCAGTTTTCACTGTCACCTGATTTCCAGAATTTACTAGTTTTTCCGATCAAATTCTTGAATTACAGCTCAATTTTGTAGTACGAAATTCCAGTTTTTGGTAAAAATCATACTTGTAAAATTCCGGGCCGGCCCGCCAAAGCCCGGACCCGGCCCGGAAGGCCCGGTGTCAAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTTTCCATTTTTTTTTCGTATTTCGGATTGTTTGTCTGTCTGATCAAAAAAGATCGAAAAACTCGAAAAAAAATTTTTTGGTCGAAAAAAATCACATAAGGGTCCCCCCTTATGTGTTTTTTGAAAATTTCTAAACTAGTGAAATGACGGGCCCGGGCCGGGCCGGGCCTCCGAAATTCCGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTGCAAAAATTCCGTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTAAGAATGGCTTTTCTAGCTTA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TACTGCAAAAATTCCGTTTTTCATAAAGTTTTTACTGAGGCTTAGGAATTTTTGTAGTTTGTAGTTTTGTGTAAAACCTTTTAAAAGCAAATTTAGACCCAAAAACCAGTGAAAACGGTGGGAAATGAAGTGAGTTACAGCGCTTCGAAGTTTTACTGAGGCTTAGACTACAAACTACAAAAATTAAAAAACCGCTGAGACTTGACTAATTTTTAAGCTAGAAAAGCCATTCTTAG</canonical_amplicon>
		<polymorphic_amplicon>TACTGCAAAAATTCCGTTTTTCATAAAGTTTTTACTGAGGCTTAGGAATTTTTGTAGTTTGTAGTTTTGTGTAAAACCTTTTAAAAGCAAATTTAGACCCAAAAACCAGTGAAAACGGTGGGAAATGAAGTGAGTTACAGCGCTTCGAAGTTTTACTGAGGCTTAGACTACAAACTACRAAAATTAAAAAACCGCTGAGACTTGACTAATTTTTAAGCTAGAAAAGCCATTCTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23771</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>351038</contig_pos>
        <strand></strand>
        <context>tttaaacagt[G/T]tttatwtaca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGTTCGCGAAGATTACTGTAGAAACTCCTTTTGTAGTGTTTTAAACAGT</left_flank>
        <right_flank>TTTATATACATTTTGACGTGGCAAAAAAGAACCACAAAAGGAAATTAGCT</right_flank>
        <qual_score>50</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCGTATAGAAACAAGATGAAAAATTGAAAAATCGCCAAAACTCTGAAAAAACCTCTGAAAAATGAGAAATTTTTCGAGAGAAAAAATCATTTTTTATCCGATTTTTCATCAAATTTTTGAAGATCCTTTTTTGATTTTTCCCGGTTTGTTTTTTTTGAAAAAATTGGCTCAAAACAGCTAAAAATCCTTTTTTAGATAAAAATTGAAGTTTTGCAGTCTGAAAATTGATTTTCAGCTCATTTTTAGCTCTTTTTTGACTGCAAAATGTCGATTTTCGAGGTTCATTTTTTCGATATTTCTGGGTCATTTTTCATCTAGAAAATCATTTTTGAAGGGATTTCCCACGATTTTTCGGCTTAATTTTTAGACCTTTTCAGGGTTTTTAGCTATTTTTGAGCATTCTTTTTCGAATTTTTCATAATTTTTTGTCTGAAATTTGACGGGATGGTGTTCGCGAAGATTACTGTAGAAACTCCTTTTGTAGTGTTTTAAACAGTGTTTATATACATTTTGACGTGGCAAAAAAGAACCACAAAAGGAAATTAGCTTCTACAGTAATCTACAGTAATCTTCACAAACACCGTCCAATCAAATTTCAGACAAAAATGGGAAAAATCGAAAAAGAATATTCAAAAATAGCTGAAAACCCGAAAAAGGTCTAAAAACTCTCGAAAAATCGCGAATTTTTCGGAATTTTCAGTTTTGGCGGGAATTCAAAAAATTTTTTAGAGATTTCGCAAGTTTTTCGGAAAAAGGTCTAAAAATTTTGGGAAAAATCGTTGAAAATCCTTAAAAAATTGGAATTTTTAAAAGTGAAAAATCGGTTTTCCAGATGAAAAATGACCTGAAAACTCAAAACAAAAAACTCAAAAATCGACAATTTGAAGTCAAAAAAAAAGAACTGAAATTCAATTTTCCGACTGCTAGAAATTGAATTTTTAACATAAAAATGAATTTTAACGAAATTCAAACCTTTTAAAAATTCAAAAAATTAAAAT</canonical>
            <polymorphic>ATTCGTATAGAAACAAGATGAAAAATTGAAAAATCGCCAAAACTCTGAAAAAACCTCTGAAAAATGAGAAATTTTTCGAGAGAAAAAATCATTTTTTATCCGATTTTTCATCAAATTTTTGAAGATCCTTTTTTGATTTTTCCCGGTTTGTTTTTTTTGAAAAAATTGGCTCAAAACAGCTAAAAATCCTTTTTTAGATAAAAATTGAAGTTTTGCAGTCTGAAAATTGATTTTCAGCTCATTTTTAGCTCTTTTTTGACTGCAAAATGTCGATTTTCGAGGTTCATTTTTTCGATATTTCTGGGTCATTTTTCATCTAGAAAATCATTTTTGAAGGGATTTCCCACGATTTTTCGGCTTAATTTTTAGACCTTTTCAGGGTTTTTAGCTATTTTTGAGCATTCTTTTTCGAATTTTTCATAATTTTTTGTCTGAAATTTGACGGGATGGTGTTCGCGAAGATTACTGTAGAAACTCCTTTTGTAGTGTTTTAAACAGTKTTTATATACATTTTGACGTGGCAAAAAAGAACCACAAAAGGAAATTAGCTTCTACAGTAATCTACAGTAATCTTCACAAACACCGTCCAATCAAATTTCAGACAAAAATGGGAAAAATCGAAAAAGAATATTCAAAAATAGCTGAAAACCCGAAAAAGGTCTAAAAACTCTCGAAAAATCGCGAATTTTTCGGAATTTTCAGTTTTGGCGGGAATTCAAAAAATTTTTTAGAGATTTCGCAAGTTTTTCGGAAAAAGGTCTAAAAATTTTGGGAAAAATCGTTGAAAATCCTTAAAAAATTGGAATTTTTAAAAGTGAAAAATCGGTTTTCCAGATGAAAAATGACCTGAAAACTCAAAACAAAAAACTCAAAAATCGACAATTTGAAGTCAAAAAAAAAGAACTGAAATTCAATTTTCCGACTGCTAGAAATTGAATTTTTAACATAAAAATGAATTTTAACGAAATTCAAACCTTTTAAAAATTCAAAAAATTAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>346 235 183 106 42 36 20 14 12 6</canonical_bands>
                <polymorphic_bands>346 235 183 106 42 36 32 14 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTGGGTCATTTTTCATCTA</pcr_primer_p1>
		<pcr_primer_p2>AAACTTGCGAAATCTCTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>448</pcr_amplicon_size>
		<canonical_amplicon>TTCTGGGTCATTTTTCATCTAGAAAATCATTTTTGAAGGGATTTCCCACGATTTTTCGGCTTAATTTTTAGACCTTTTCAGGGTTTTTAGCTATTTTTGAGCATTCTTTTTCGAATTTTTCATAATTTTTTGTCTGAAATTTGACGGGATGGTGTTCGCGAAGATTACTGTAGAAACTCCTTTTGTAGTGTTTTAAACAGTGTTTATATACATTTTGACGTGGCAAAAAAGAACCACAAAAGGAAATTAGCTTCTACAGTAATCTACAGTAATCTTCACAAACACCGTCCAATCAAATTTCAGACAAAAATGGGAAAAATCGAAAAAGAATATTCAAAAATAGCTGAAAACCCGAAAAAGGTCTAAAAACTCTCGAAAAATCGCGAATTTTTCGGAATTTTCAGTTTTGGCGGGAATTCAAAAAATTTTTTAGAGATTTCGCAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>TTCTGGGTCATTTTTCATCTAGAAAATCATTTTTGAAGGGATTTCCCACGATTTTTCGGCTTAATTTTTAGACCTTTTCAGGGTTTTTAGCTATTTTTGAGCATTCTTTTTCGAATTTTTCATAATTTTTTGTCTGAAATTTGACGGGATGGTGTTCGCGAAGATTACTGTAGAAACTCCTTTTGTAGTGTTTTAAACAGTKTTTATATACATTTTGACGTGGCAAAAAAGAACCACAAAAGGAAATTAGCTTCTACAGTAATCTACAGTAATCTTCACAAACACCGTCCAATCAAATTTCAGACAAAAATGGGAAAAATCGAAAAAGAATATTCAAAAATAGCTGAAAACCCGAAAAAGGTCTAAAAACTCTCGAAAAATCGCGAATTTTTCGGAATTTTCAGTTTTGGCGGGAATTCAAAAAATTTTTTAGAGATTTCGCAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23772</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>351044</contig_pos>
        <strand></strand>
        <context>cagtktttat[A/T]tacattttga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCGAAGATTACTGTAGAAACTCCTTTTGTAGTGTTTTAAACAGTGTTTAT</left_flank>
        <right_flank>TACATTTTGACGTGGCAAAAAAGAACCACAAAAGGAAATTAGCTTCTACA</right_flank>
        <qual_score>49</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGAAACAAGATGAAAAATTGAAAAATCGCCAAAACTCTGAAAAAACCTCTGAAAAATGAGAAATTTTTCGAGAGAAAAAATCATTTTTTATCCGATTTTTCATCAAATTTTTGAAGATCCTTTTTTGATTTTTCCCGGTTTGTTTTTTTTGAAAAAATTGGCTCAAAACAGCTAAAAATCCTTTTTTAGATAAAAATTGAAGTTTTGCAGTCTGAAAATTGATTTTCAGCTCATTTTTAGCTCTTTTTTGACTGCAAAATGTCGATTTTCGAGGTTCATTTTTTCGATATTTCTGGGTCATTTTTCATCTAGAAAATCATTTTTGAAGGGATTTCCCACGATTTTTCGGCTTAATTTTTAGACCTTTTCAGGGTTTTTAGCTATTTTTGAGCATTCTTTTTCGAATTTTTCATAATTTTTTGTCTGAAATTTGACGGGATGGTGTTCGCGAAGATTACTGTAGAAACTCCTTTTGTAGTGTTTTAAACAGTGTTTATATACATTTTGACGTGGCAAAAAAGAACCACAAAAGGAAATTAGCTTCTACAGTAATCTACAGTAATCTTCACAAACACCGTCCAATCAAATTTCAGACAAAAATGGGAAAAATCGAAAAAGAATATTCAAAAATAGCTGAAAACCCGAAAAAGGTCTAAAAACTCTCGAAAAATCGCGAATTTTTCGGAATTTTCAGTTTTGGCGGGAATTCAAAAAATTTTTTAGAGATTTCGCAAGTTTTTCGGAAAAAGGTCTAAAAATTTTGGGAAAAATCGTTGAAAATCCTTAAAAAATTGGAATTTTTAAAAGTGAAAAATCGGTTTTCCAGATGAAAAATGACCTGAAAACTCAAAACAAAAAACTCAAAAATCGACAATTTGAAGTCAAAAAAAAAGAACTGAAATTCAATTTTCCGACTGCTAGAAATTGAATTTTTAACATAAAAATGAATTTTAACGAAATTCAAACCTTTTAAAAATTCAAAAAATTAAAATAAAATT</canonical>
            <polymorphic>ATAGAAACAAGATGAAAAATTGAAAAATCGCCAAAACTCTGAAAAAACCTCTGAAAAATGAGAAATTTTTCGAGAGAAAAAATCATTTTTTATCCGATTTTTCATCAAATTTTTGAAGATCCTTTTTTGATTTTTCCCGGTTTGTTTTTTTTGAAAAAATTGGCTCAAAACAGCTAAAAATCCTTTTTTAGATAAAAATTGAAGTTTTGCAGTCTGAAAATTGATTTTCAGCTCATTTTTAGCTCTTTTTTGACTGCAAAATGTCGATTTTCGAGGTTCATTTTTTCGATATTTCTGGGTCATTTTTCATCTAGAAAATCATTTTTGAAGGGATTTCCCACGATTTTTCGGCTTAATTTTTAGACCTTTTCAGGGTTTTTAGCTATTTTTGAGCATTCTTTTTCGAATTTTTCATAATTTTTTGTCTGAAATTTGACGGGATGGTGTTCGCGAAGATTACTGTAGAAACTCCTTTTGTAGTGTTTTAAACAGTGTTTATWTACATTTTGACGTGGCAAAAAAGAACCACAAAAGGAAATTAGCTTCTACAGTAATCTACAGTAATCTTCACAAACACCGTCCAATCAAATTTCAGACAAAAATGGGAAAAATCGAAAAAGAATATTCAAAAATAGCTGAAAACCCGAAAAAGGTCTAAAAACTCTCGAAAAATCGCGAATTTTTCGGAATTTTCAGTTTTGGCGGGAATTCAAAAAATTTTTTAGAGATTTCGCAAGTTTTTCGGAAAAAGGTCTAAAAATTTTGGGAAAAATCGTTGAAAATCCTTAAAAAATTGGAATTTTTAAAAGTGAAAAATCGGTTTTCCAGATGAAAAATGACCTGAAAACTCAAAACAAAAAACTCAAAAATCGACAATTTGAAGTCAAAAAAAAAGAACTGAAATTCAATTTTCCGACTGCTAGAAATTGAATTTTTAACATAAAAATGAATTTTAACGAAATTCAAACCTTTTAAAAATTCAAAAAATTAAAATAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTGGGTCATTTTTCATCTA</pcr_primer_p1>
		<pcr_primer_p2>AAACTTGCGAAATCTCTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>448</pcr_amplicon_size>
		<canonical_amplicon>TTCTGGGTCATTTTTCATCTAGAAAATCATTTTTGAAGGGATTTCCCACGATTTTTCGGCTTAATTTTTAGACCTTTTCAGGGTTTTTAGCTATTTTTGAGCATTCTTTTTCGAATTTTTCATAATTTTTTGTCTGAAATTTGACGGGATGGTGTTCGCGAAGATTACTGTAGAAACTCCTTTTGTAGTGTTTTAAACAGTGTTTATATACATTTTGACGTGGCAAAAAAGAACCACAAAAGGAAATTAGCTTCTACAGTAATCTACAGTAATCTTCACAAACACCGTCCAATCAAATTTCAGACAAAAATGGGAAAAATCGAAAAAGAATATTCAAAAATAGCTGAAAACCCGAAAAAGGTCTAAAAACTCTCGAAAAATCGCGAATTTTTCGGAATTTTCAGTTTTGGCGGGAATTCAAAAAATTTTTTAGAGATTTCGCAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>TTCTGGGTCATTTTTCATCTAGAAAATCATTTTTGAAGGGATTTCCCACGATTTTTCGGCTTAATTTTTAGACCTTTTCAGGGTTTTTAGCTATTTTTGAGCATTCTTTTTCGAATTTTTCATAATTTTTTGTCTGAAATTTGACGGGATGGTGTTCGCGAAGATTACTGTAGAAACTCCTTTTGTAGTGTTTTAAACAGTGTTTATWTACATTTTGACGTGGCAAAAAAGAACCACAAAAGGAAATTAGCTTCTACAGTAATCTACAGTAATCTTCACAAACACCGTCCAATCAAATTTCAGACAAAAATGGGAAAAATCGAAAAAGAATATTCAAAAATAGCTGAAAACCCGAAAAAGGTCTAAAAACTCTCGAAAAATCGCGAATTTTTCGGAATTTTCAGTTTTGGCGGGAATTCAAAAAATTTTTTAGAGATTTCGCAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23773</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>351338</contig_pos>
        <strand>+</strand>
        <context>CCTTWAAAAA[A/T]TGGAATTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAAAAAGGTCTAAAAATTTTGGGAAAAATCGTTGAAAATCCTTAAAAAA</left_flank>
        <right_flank>TGGAATTTTTAAAAGTGAAAAATCGGTTTTCCAGATGAAAAATGACCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGGGTCATTTTTCATCTAGAAAATCATTTTTGAAGGGATTTCCCACGATTTTTCGGCTTAATTTTTAGACCTTTTCAGGGTTTTTAGCTATTTTTGAGCATTCTTTTTCGAATTTTTCATAATTTTTTGTCTGAAATTTGACGGGATGGTGTTCGCGAAGATTACTGTAGAAACTCCTTTTGTAGTGTTTTAAACAGTGTTTATATACATTTTGACGTGGCAAAAAAGAACCACAAAAGGAAATTAGCTTCTACAGTAATCTACAGTAATCTTCACAAACACCGTCCAATCAAATTTCAGACAAAAATGGGAAAAATCGAAAAAGAATATTCAAAAATAGCTGAAAACCCGAAAAAGGTCTAAAAACTCTCGAAAAATCGCGAATTTTTCGGAATTTTCAGTTTTGGCGGGAATTCAAAAAATTTTTTAGAGATTTCGCAAGTTTTTCGGAAAAAGGTCTAAAAATTTTGGGAAAAATCGTTGAAAATCCTTAAAAAATTGGAATTTTTAAAAGTGAAAAATCGGTTTTCCAGATGAAAAATGACCTGAAAACTCAAAACAAAAAACTCAAAAATCGACAATTTGAAGTCAAAAAAAAAGAACTGAAATTCAATTTTCCGACTGCTAGAAATTGAATTTTTAACATAAAAATGAATTTTAACGAAATTCAAACCTTTTAAAAATTCAAAAAATTAAAATAAAATTCGAATAAAATCACTTATTTTACAGAGTGATTTTTCAAAATTGTGTGGATTTTTTCTGATTTTTTCTCTGTTTCTATTCGAATCTACATCGTTTTCTACACATTTCAATGCGAAGTTCAAATATTCACCTTCTTATGCTTTCTCGCCTTCCTCTCCTTCTTCGCTCTCTTCCGACGACGTTCCTCTGCTTCTGAATCCGTCGAGTCATCGGAATTATCGTTTGGACGACGTCGTTTGGCATCTGGAGACGAAGAACCGCTCCGACGACGATATTGAGCCGGAAGCACCGGGCTAC</canonical>
            <polymorphic>CTGGGTCATTTTTCATCTAGAAAATCATTTTTGAAGGGATTTCCCACGATTTTTCGGCTTAATTTTTAGACCTTTTCAGGGTTTTTAGCTATTTTTGAGCATTCTTTTTCGAATTTTTCATAATTTTTTGTCTGAAATTTGACGGGATGGTGTTCGCGAAGATTACTGTAGAAACTCCTTTTGTAGTGTTTTAAACAGTGTTTATATACATTTTGACGTGGCAAAAAAGAACCACAAAAGGAAATTAGCTTCTACAGTAATCTACAGTAATCTTCACAAACACCGTCCAATCAAATTTCAGACAAAAATGGGAAAAATCGAAAAAGAATATTCAAAAATAGCTGAAAACCCGAAAAAGGTCTAAAAACTCTCGAAAAATCGCGAATTTTTCGGAATTTTCAGTTTTGGCGGGAATTCAAAAAATTTTTTAGAGATTTCGCAAGTTTTTCGGAAAAAGGTCTAAAAATTTTGGGAAAAATCGTTGAAAATCCTTAAAAAAWTGGAATTTTTAAAAGTGAAAAATCGGTTTTCCAGATGAAAAATGACCTGAAAACTCAAAACAAAAAACTCAAAAATCGACAATTTGAAGTCAAAAAAAAAGAACTGAAATTCAATTTTCCGACTGCTAGAAATTGAATTTTTAACATAAAAATGAATTTTAACGAAATTCAAACCTTTTAAAAATTCAAAAAATTAAAATAAAATTCGAATAAAATCACTTATTTTACAGAGTGATTTTTCAAAATTGTGTGGATTTTTTCTGATTTTTTCTCTGTTTCTATTCGAATCTACATCGTTTTCTACACATTTCAATGCGAAGTTCAAATATTCACCTTCTTATGCTTTCTCGCCTTCCTCTCCTTCTTCGCTCTCTTCCGACGACGTTCCTCTGCTTCTGAATCCGTCGAGTCATCGGAATTATCGTTTGGACGACGTCGTTTGGCATCTGGAGACGAAGAACCGCTCCGACGACGATATTGAGCCGGAAGCACCGGGCTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>173 107 90 84 77 60 51 51 43 41 33 27 19 19 18 17 14 11 11 10 10 9 9 6 5 5</canonical_bands>
                <polymorphic_bands>173 107 90 84 77 60 51 51 43 41 39 27 19 19 18 17 14 11 11 10 10 9 9 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTAGAGATTTCGCAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>AATTTCTAGCAGTCGGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>210</pcr_amplicon_size>
		<canonical_amplicon>TTTTTAGAGATTTCGCAAGTTTTTCGGAAAAAGGTCTAAAAATTTTGGGAAAAATCGTTGAAAATCCTTAAAAAATTGGAATTTTTAAAAGTGAAAAATCGGTTTTCCAGATGAAAAATGACCTGAAAACTCAAAACAAAAAACTCAAAAATCGACAATTTGAAGTCAAAAAAAAAGAACTGAAATTCAATTTTCCGACTGCTAGAAATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTAGAGATTTCGCAAGTTTTTCGGAAAAAGGTCTAAAAATTTTGGGAAAAATCGTTGAAAATCCTTAAAAAAWTGGAATTTTTAAAAGTGAAAAATCGGTTTTCCAGATGAAAAATGACCTGAAAACTCAAAACAAAAAACTCAAAAATCGACAATTTGAAGTCAAAAAAAAAGAACTGAAATTCAATTTTCCGACTGCTAGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23774</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>351438</contig_pos>
        <strand>+</strand>
        <context>TCAAAAAAAA[A/C]GAACTGAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAACTCAAAACAAAAAACTCAAAAATCGACAATTTGAAGTCAAAAAAAA</left_flank>
        <right_flank>GAACTGAAATTCAATTTTCCGACTGCTAGAAATTGAATTTTTAACATAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTTTTTCGAATTTTTCATAATTTTTTGTCTGAAATTTGACGGGATGGTGTTCGCGAAGATTACTGTAGAAACTCCTTTTGTAGTGTTTTAAACAGTGTTTATATACATTTTGACGTGGCAAAAAAGAACCACAAAAGGAAATTAGCTTCTACAGTAATCTACAGTAATCTTCACAAACACCGTCCAATCAAATTTCAGACAAAAATGGGAAAAATCGAAAAAGAATATTCAAAAATAGCTGAAAACCCGAAAAAGGTCTAAAAACTCTCGAAAAATCGCGAATTTTTCGGAATTTTCAGTTTTGGCGGGAATTCAAAAAATTTTTTAGAGATTTCGCAAGTTTTTCGGAAAAAGGTCTAAAAATTTTGGGAAAAATCGTTGAAAATCCTTAAAAAATTGGAATTTTTAAAAGTGAAAAATCGGTTTTCCAGATGAAAAATGACCTGAAAACTCAAAACAAAAAACTCAAAAATCGACAATTTGAAGTCAAAAAAAAAGAACTGAAATTCAATTTTCCGACTGCTAGAAATTGAATTTTTAACATAAAAATGAATTTTAACGAAATTCAAACCTTTTAAAAATTCAAAAAATTAAAATAAAATTCGAATAAAATCACTTATTTTACAGAGTGATTTTTCAAAATTGTGTGGATTTTTTCTGATTTTTTCTCTGTTTCTATTCGAATCTACATCGTTTTCTACACATTTCAATGCGAAGTTCAAATATTCACCTTCTTATGCTTTCTCGCCTTCCTCTCCTTCTTCGCTCTCTTCCGACGACGTTCCTCTGCTTCTGAATCCGTCGAGTCATCGGAATTATCGTTTGGACGACGTCGTTTGGCATCTGGAGACGAAGAACCGCTCCGACGACGATATTGAGCCGGAAGCACCGGGCTACTCTTCTTTTCTGCGAATTTTCTGGGGCTTCTGGATGACGATTTTCTAGTTCTTCTAGGTGATTCAGAAGGCGAACGTCCACGTCGAGCTGGAGAACGCCC</canonical>
            <polymorphic>ATTCTTTTTCGAATTTTTCATAATTTTTTGTCTGAAATTTGACGGGATGGTGTTCGCGAAGATTACTGTAGAAACTCCTTTTGTAGTGTTTTAAACAGTGTTTATATACATTTTGACGTGGCAAAAAAGAACCACAAAAGGAAATTAGCTTCTACAGTAATCTACAGTAATCTTCACAAACACCGTCCAATCAAATTTCAGACAAAAATGGGAAAAATCGAAAAAGAATATTCAAAAATAGCTGAAAACCCGAAAAAGGTCTAAAAACTCTCGAAAAATCGCGAATTTTTCGGAATTTTCAGTTTTGGCGGGAATTCAAAAAATTTTTTAGAGATTTCGCAAGTTTTTCGGAAAAAGGTCTAAAAATTTTGGGAAAAATCGTTGAAAATCCTTAAAAAATTGGAATTTTTAAAAGTGAAAAATCGGTTTTCCAGATGAAAAATGACCTGAAAACTCAAAACAAAAAACTCAAAAATCGACAATTTGAAGTCAAAAAAAAMGAACTGAAATTCAATTTTCCGACTGCTAGAAATTGAATTTTTAACATAAAAATGAATTTTAACGAAATTCAAACCTTTTAAAAATTCAAAAAATTAAAATAAAATTCGAATAAAATCACTTATTTTACAGAGTGATTTTTCAAAATTGTGTGGATTTTTTCTGATTTTTTCTCTGTTTCTATTCGAATCTACATCGTTTTCTACACATTTCAATGCGAAGTTCAAATATTCACCTTCTTATGCTTTCTCGCCTTCCTCTCCTTCTTCGCTCTCTTCCGACGACGTTCCTCTGCTTCTGAATCCGTCGAGTCATCGGAATTATCGTTTGGACGACGTCGTTTGGCATCTGGAGACGAAGAACCGCTCCGACGACGATATTGAGCCGGAAGCACCGGGCTACTCTTCTTTTCTGCGAATTTTCTGGGGCTTCTGGATGACGATTTTCTAGTTCTTCTAGGTGATTCAGAAGGCGAACGTCCACGTCGAGCTGGAGAACGCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGACCTGAAAACTCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GATTCGAATAGAAACAGAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATGACCTGAAAACTCAAAACAAAAAACTCAAAAATCGACAATTTGAAGTCAAAAAAAAAGAACTGAAATTCAATTTTCCGACTGCTAGAAATTGAATTTTTAACATAAAAATGAATTTTAACGAAATTCAAACCTTTTAAAAATTCAAAAAATTAAAATAAAATTCGAATAAAATCACTTATTTTACAGAGTGATTTTTCAAAATTGTGTGGATTTTTTCTGATTTTTTCTCTGTTTCTATTCGAATC</canonical_amplicon>
		<polymorphic_amplicon>AAATGACCTGAAAACTCAAAACAAAAAACTCAAAAATCGACAATTTGAAGTCAAAAAAAAMGAACTGAAATTCAATTTTCCGACTGCTAGAAATTGAATTTTTAACATAAAAATGAATTTTAACGAAATTCAAACCTTTTAAAAATTCAAAAAATTAAAATAAAATTCGAATAAAATCACTTATTTTACAGAGTGATTTTTCAAAATTGTGTGGATTTTTTCTGATTTTTTCTCTGTTTCTATTCGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23775</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>353665</contig_pos>
        <strand>+</strand>
        <context>TGGGACAAAT[C/T]TGATTGGCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGATTGGTAGAAAATCCGGCGAAAATCAATAGGGAAACATTGGGACAAAT</left_flank>
        <right_flank>TGATTGGCTCGACACGAAAAACGCGCCAGTTTTTTTCGTTTGCGCAGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATATCCTTCTCATCCAACTGCGATAGAATATACTCCACGACAACGTCATCCTCGATTCCCAGTATCTCATTCACACGAGCGGTGATCCACGGCTTGATGACGTCCATATTGATGCGGGTCAGGTCGATCTTGAAGGAAAATATGAGAGAAGAGCCATCAAACCTTTAATATTCCAGATTAGAAATTTTTTCTATTTTTTCAAAAACTTTTTTCCAAAAAAAAAACTTTTTTCGGTTTTTCAGGTGAAAAATCGCTACTAGACCTCATTTTTATCTATATTTCCTACCTTTTTCTCTAGCTGCTGCTCGAATTTCATTGTTTTCAACAACTTTTTTTCTTTATCCGAAAATCGGCCATCCTGCTCTGAGCTGGCGCCGCGGAAGTAGCCAGCGTCCATTCTGAGATAGAAATTAGGTTAAATGTTCAATTTTCATAAGAAAAAACAAGGAGATTGGTAGAAAATCCGGCGAAAATCAATAGGGAAACATTGGGACAAATCTGATTGGCTCGACACGAAAAACGCGCCAGTTTTTTTCGTTTGCGCAGTTTTGGTGAGTGAGCTGGCGCGTTTCTCGTTTCCGGCGGGAATTTCAATTTTGAAGGAAGAAACTTGAAAAATTATTTATTTTCCGGGATTTTTTCAGCTCTTTTCCCCACTTTTAGCAAAAAAACACAAAATTCAGTCAGGAATACAAGTATTTTATTTGCTTTTCAATTAAAGGCATACATCAAGCACCAAAACCAGAAAAATGGTTTTTCAGGGGGGGGGGGAGAGAAAGGAAAAAAATCAATTATTGCCATAAAAAATACGTCGATACATAGGAACATGTAATTAAGAAGGTGAGAAAACAGGTGAAAAAACTTATTATGACATATGAGAGGGGGAGAAAATGCAAATTTTTGTATTATGAGGTTGTGAAGAAAATGCGCTCTATTGCTAAATTTTTTGAATTTTCAGCAAAAAACAAATGGATTCATAGAAACAAAATGCAATAAAAT</canonical>
            <polymorphic>AATATCCTTCTCATCCAACTGCGATAGAATATACTCCACGACAACGTCATCCTCGATTCCCAGTATCTCATTCACACGAGCGGTGATCCACGGCTTGATGACGTCCATATTGATGCGGGTCAGGTCGATCTTGAAGGAAAATATGAGAGAAGAGCCATCAAACCTTTAATATTCCAGATTAGAAATTTTTTCTATTTTTTCAAAAACTTTTTTCCAAAAAAAAAACTTTTTTCGGTTTTTCAGGTGAAAAATCGCTACTAGACCTCATTTTTATCTATATTTCCTACCTTTTTCTCTAGCTGCTGCTCGAATTTCATTGTTTTCAACAACTTTTTTTCTTTATCCGAAAATCGGCCATCCTGCTCTGAGCTGGCGCCGCGGAAGTAGCCAGCGTCCATTCTGAGATAGAAATTAGGTTAAATGTTCAATTTTCATAAGAAAAAACAAGGAGATTGGTAGAAAATCCGGCGAAAATCAATAGGGAAACATTGGGACAAATYTGATTGGCTCGACACGAAAAACGCGCCAGTTTTTTTCGTTTGCGCAGTTTTGGTGAGTGAGCTGGCGCGTTTCTCGTTTCCGGCGGGAATTTCAATTTTGAAGGAAGAAACTTGAAAAATTATTTATTTTCCGGGATTTTTTCAGCTCTTTTCCCCACTTTTAGCAAAAAAACACAAAATTCAGTCAGGAATACAAGTATTTTATTTGCTTTTCAATTAAAGGCATACATCAAGCACCAAAACCAGAAAAATGGTTTTTCAGGGGGGGGGGGAGAGAAAGGAAAAAAATCAATTATTGCCATAAAAAATACGTCGATACATAGGAACATGTAATTAAGAAGGTGAGAAAACAGGTGAAAAAACTTATTATGACATATGAGAGGGGGAGAAAATGCAAATTTTTGTATTATGAGGTTGTGAAGAAAATGCGCTCTATTGCTAAATTTTTTGAATTTTCAGCAAAAAACAAATGGATTCATAGAAACAAAATGCAATAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>499 345 100 35 21</canonical_bands>
                <polymorphic_bands>599 345 35 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAAGGAGATTGGTAGAAAATC</pcr_primer_p1>
		<pcr_primer_p2>TATTCCTGACTGAATTTTGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AACAAGGAGATTGGTAGAAAATCCGGCGAAAATCAATAGGGAAACATTGGGACAAATCTGATTGGCTCGACACGAAAAACGCGCCAGTTTTTTTCGTTTGCGCAGTTTTGGTGAGTGAGCTGGCGCGTTTCTCGTTTCCGGCGGGAATTTCAATTTTGAAGGAAGAAACTTGAAAAATTATTTATTTTCCGGGATTTTTTCAGCTCTTTTCCCCACTTTTAGCAAAAAAACACAAAATTCAGTCAGGAATA</canonical_amplicon>
		<polymorphic_amplicon>AACAAGGAGATTGGTAGAAAATCCGGCGAAAATCAATAGGGAAACATTGGGACAAATYTGATTGGCTCGACACGAAAAACGCGCCAGTTTTTTTCGTTTGCGCAGTTTTGGTGAGTGAGCTGGCGCGTTTCTCGTTTCCGGCGGGAATTTCAATTTTGAAGGAAGAAACTTGAAAAATTATTTATTTTCCGGGATTTTTTCAGCTCTTTTCCCCACTTTTAGCAAAAAAACACAAAATTCAGTCAGGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23776</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>353740</contig_pos>
        <strand>+</strand>
        <context>GCGCGTTTCT[C/T]GTTTCCGGCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCAGTTTTTTTCGTTTGCGCAGTTTTGGTGAGTGAGCTGGCGCGTTTCT</left_flank>
        <right_flank>GTTTCCGGCGGGAATTTCAATTTTGAAGGAAGAAACTTGAAAAATTATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGAGCGGTGATCCACGGCTTGATGACGTCCATATTGATGCGGGTCAGGTCGATCTTGAAGGAAAATATGAGAGAAGAGCCATCAAACCTTTAATATTCCAGATTAGAAATTTTTTCTATTTTTTCAAAAACTTTTTTCCAAAAAAAAAACTTTTTTCGGTTTTTCAGGTGAAAAATCGCTACTAGACCTCATTTTTATCTATATTTCCTACCTTTTTCTCTAGCTGCTGCTCGAATTTCATTGTTTTCAACAACTTTTTTTCTTTATCCGAAAATCGGCCATCCTGCTCTGAGCTGGCGCCGCGGAAGTAGCCAGCGTCCATTCTGAGATAGAAATTAGGTTAAATGTTCAATTTTCATAAGAAAAAACAAGGAGATTGGTAGAAAATCCGGCGAAAATCAATAGGGAAACATTGGGACAAATCTGATTGGCTCGACACGAAAAACGCGCCAGTTTTTTTCGTTTGCGCAGTTTTGGTGAGTGAGCTGGCGCGTTTCTCGTTTCCGGCGGGAATTTCAATTTTGAAGGAAGAAACTTGAAAAATTATTTATTTTCCGGGATTTTTTCAGCTCTTTTCCCCACTTTTAGCAAAAAAACACAAAATTCAGTCAGGAATACAAGTATTTTATTTGCTTTTCAATTAAAGGCATACATCAAGCACCAAAACCAGAAAAATGGTTTTTCAGGGGGGGGGGGAGAGAAAGGAAAAAAATCAATTATTGCCATAAAAAATACGTCGATACATAGGAACATGTAATTAAGAAGGTGAGAAAACAGGTGAAAAAACTTATTATGACATATGAGAGGGGGAGAAAATGCAAATTTTTGTATTATGAGGTTGTGAAGAAAATGCGCTCTATTGCTAAATTTTTTGAATTTTCAGCAAAAAACAAATGGATTCATAGAAACAAAATGCAATAAAATTGAGGAGAGAATGGGATGGGTGAATTTGCGTAATATAAAACAATCAAATAATAATAAAGTTAGTTAATCAGGTTG</canonical>
            <polymorphic>ACGAGCGGTGATCCACGGCTTGATGACGTCCATATTGATGCGGGTCAGGTCGATCTTGAAGGAAAATATGAGAGAAGAGCCATCAAACCTTTAATATTCCAGATTAGAAATTTTTTCTATTTTTTCAAAAACTTTTTTCCAAAAAAAAAACTTTTTTCGGTTTTTCAGGTGAAAAATCGCTACTAGACCTCATTTTTATCTATATTTCCTACCTTTTTCTCTAGCTGCTGCTCGAATTTCATTGTTTTCAACAACTTTTTTTCTTTATCCGAAAATCGGCCATCCTGCTCTGAGCTGGCGCCGCGGAAGTAGCCAGCGTCCATTCTGAGATAGAAATTAGGTTAAATGTTCAATTTTCATAAGAAAAAACAAGGAGATTGGTAGAAAATCCGGCGAAAATCAATAGGGAAACATTGGGACAAATCTGATTGGCTCGACACGAAAAACGCGCCAGTTTTTTTCGTTTGCGCAGTTTTGGTGAGTGAGCTGGCGCGTTTCTYGTTTCCGGCGGGAATTTCAATTTTGAAGGAAGAAACTTGAAAAATTATTTATTTTCCGGGATTTTTTCAGCTCTTTTCCCCACTTTTAGCAAAAAAACACAAAATTCAGTCAGGAATACAAGTATTTTATTTGCTTTTCAATTAAAGGCATACATCAAGCACCAAAACCAGAAAAATGGTTTTTCAGGGGGGGGGGGAGAGAAAGGAAAAAAATCAATTATTGCCATAAAAAATACGTCGATACATAGGAACATGTAATTAAGAAGGTGAGAAAACAGGTGAAAAAACTTATTATGACATATGAGAGGGGGAGAAAATGCAAATTTTTGTATTATGAGGTTGTGAAGAAAATGCGCTCTATTGCTAAATTTTTTGAATTTTCAGCAAAAAACAAATGGATTCATAGAAACAAAATGCAATAAAATTGAGGAGAGAATGGGATGGGTGAATTTGCGTAATATAAAACAATCAAATAATAATAAAGTTAGTTAATCAGGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAAGGAGATTGGTAGAAAATC</pcr_primer_p1>
		<pcr_primer_p2>TATTCCTGACTGAATTTTGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AACAAGGAGATTGGTAGAAAATCCGGCGAAAATCAATAGGGAAACATTGGGACAAATCTGATTGGCTCGACACGAAAAACGCGCCAGTTTTTTTCGTTTGCGCAGTTTTGGTGAGTGAGCTGGCGCGTTTCTCGTTTCCGGCGGGAATTTCAATTTTGAAGGAAGAAACTTGAAAAATTATTTATTTTCCGGGATTTTTTCAGCTCTTTTCCCCACTTTTAGCAAAAAAACACAAAATTCAGTCAGGAATA</canonical_amplicon>
		<polymorphic_amplicon>AACAAGGAGATTGGTAGAAAATCCGGCGAAAATCAATAGGGAAACATTGGGACAAATCTGATTGGCTCGACACGAAAAACGCGCCAGTTTTTTTCGTTTGCGCAGTTTTGGTGAGTGAGCTGGCGCGTTTCTYGTTTCCGGCGGGAATTTCAATTTTGAAGGAAGAAACTTGAAAAATTATTTATTTTCCGGGATTTTTTCAGCTCTTTTCCCCACTTTTAGCAAAAAAACACAAAATTCAGTCAGGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23777</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>361963</contig_pos>
        <strand>+</strand>
        <context>GCAAAAAATG[A/G]AAATTCTAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCTAGAAGTTTCTAATGAAATCTGAGAATTCAGGAATATGCAAAAAATG</left_flank>
        <right_flank>AAATTCTAGGGAAAAAAGTTTTTCGAAGAAATCAGAATGTTAAATAGCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATATTCAAATGCAAATCGCTAGGAGGGGGGTTGTTAGGGGGGACACTAGGAGCCGCGTCCTCTTCCGAAGGGGGCCCCGATCGGAGGGAAGAATGGAGAAGAAGCAGATGTGCTTCTTCTTCTTCTTCTGCTGACCTGTCAGAGAGGGTCGTCTGGGGGGCTTCTCTCATTTTCAAGGCCATAACTTTCACATTTCCCGTGTCAGCGGGGCTCCGTTGGCTCCGTTGGCAACCGTCTCTAATGGGGAAATTGAGAGAGAAATCTATGAATTGGATGTCTGGTGGTCTCCTAGGCTCAAGACGAATGCTCGAAAATGTCTAAGAATCGTGAAAAGTTGGAAAGTCTAGTTTAGGAGATCCTAAAAATGGAATTTCTAGCAACAATAGAGAAAAAGAAACTCGGAAAAGGTAATTTCAAAAAATGATTGAAAATTGGAAAAATTGAAGACTCTAGAAGTTTCTAATGAAATCTGAGAATTCAGGAATATGCAAAAAATGGAAATTCTAGGGAAAAAAGTTTTTCGAAGAAATCAGAATGTTAAATAGCACCCACTAGAGTTTAATAAGGAAAATCTAGGTCCAGAAAAGCTAAAAAATAGAAAAAAAACCAAAAAAAAGAGAGAATTTTCGCTGAAATTTCGGTAAAAAAACGTTTTTACTGAGGCTTATTAACTTTTGTAGTTTGTAGCTGTTTTGAATCGTTCAAGGATTTTAGTTAGAGAAAATCACAAAACTACAAACTACAAACGAGTCTAAAAATTGGGAAAAAATTCAAGCTGAAAGTGACGAAAAACGGTTTTTAGGGATTTTACTGAGGCTTAGAAACTTTTGTAGTTTGTAGTCTCTAAGCCTGAGTAATCAATAAACACTTGAGTATAAACATGAAGACTCGAAAAACAAAAAAAAGGCAATTTTCAGAAAAAAAGAATGCAAAAAAACGCAAAATTCGGCTTTCCTGATGCTTAGAGACTACAAACTACAAAAATCTTCTAAGCCTCA</canonical>
            <polymorphic>ATATATTCAAATGCAAATCGCTAGGAGGGGGGTTGTTAGGGGGGACACTAGGAGCCGCGTCCTCTTCCGAAGGGGGCCCCGATCGGAGGGAAGAATGGAGAAGAAGCAGATGTGCTTCTTCTTCTTCTTCTGCTGACCTGTCAGAGAGGGTCGTCTGGGGGGCTTCTCTCATTTTCAAGGCCATAACTTTCACATTTCCCGTGTCAGCGGGGCTCCGTTGGCTCCGTTGGCAACCGTCTCTAATGGGGAAATTGAGAGAGAAATCTATGAATTGGATGTCTGGTGGTCTCCTAGGCTCAAGACGAATGCTCGAAAATGTCTAAGAATCGTGAAAAGTTGGAAAGTCTAGTTTAGGAGATCCTAAAAATGGAATTTCTAGCAACAATAGAGAAAAAGAAACTCGGAAAAGGTAATTTCAAAAAATGATTGAAAATTGGAAAAATTGAAGACTCTAGAAGTTTCTAATGAAATCTGAGAATTCAGGAATATGCAAAAAATGRAAATTCTAGGGAAAAAAGTTTTTCGAAGAAATCAGAATGTTAAATAGCACCCACTAGAGTTTAATAAGGAAAATCTAGGTCCAGAAAAGCTAAAAAATAGAAAAAAAACCAAAAAAAAGAGAGAATTTTCGCTGAAATTTCGGTAAAAAAACGTTTTTACTGAGGCTTATTAACTTTTGTAGTTTGTAGCTGTTTTGAATCGTTCAAGGATTTTAGTTAGAGAAAATCACAAAACTACAAACTACAAACGAGTCTAAAAATTGGGAAAAAATTCAAGCTGAAAGTGACGAAAAACGGTTTTTAGGGATTTTACTGAGGCTTAGAAACTTTTGTAGTTTGTAGTCTCTAAGCCTGAGTAATCAATAAACACTTGAGTATAAACATGAAGACTCGAAAAACAAAAAAAAGGCAATTTTCAGAAAAAAAGAATGCAAAAAAACGCAAAATTCGGCTTTCCTGATGCTTAGAGACTACAAACTACAAAAATCTTCTAAGCCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATGTCTAAGAATCGTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAACTCTAGTGGGTGCTATTTAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATGTCTAAGAATCGTGAAAAGTTGGAAAGTCTAGTTTAGGAGATCCTAAAAATGGAATTTCTAGCAACAATAGAGAAAAAGAAACTCGGAAAAGGTAATTTCAAAAAATGATTGAAAATTGGAAAAATTGAAGACTCTAGAAGTTTCTAATGAAATCTGAGAATTCAGGAATATGCAAAAAATGGAAATTCTAGGGAAAAAAGTTTTTCGAAGAAATCAGAATGTTAAATAGCACCCACTAGAGTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAATGTCTAAGAATCGTGAAAAGTTGGAAAGTCTAGTTTAGGAGATCCTAAAAATGGAATTTCTAGCAACAATAGAGAAAAAGAAACTCGGAAAAGGTAATTTCAAAAAATGATTGAAAATTGGAAAAATTGAAGACTCTAGAAGTTTCTAATGAAATCTGAGAATTCAGGAATATGCAAAAAATGRAAATTCTAGGGAAAAAAGTTTTTCGAAGAAATCAGAATGTTAAATAGCACCCACTAGAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23778</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>365218</contig_pos>
        <strand></strand>
        <context>gacggtgtgc[G/A]cttkcttcta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGC</left_flank>
        <right_flank>CTTTCTTCTATTCGAGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGCAGCCCTCCCCGATCGGAGGAGGACCGATGGGTTTTAGAGGAAAGAAGACAGCCAAGACGGTTCTGGTGGTGCACAAAATTTATGGCAAACATTAGGCTATGGGGGTAGAGGTATAGTCTTGAAATTGACCCTTTGATGGGTCAGCATATGGTGTATTTCCAACAAAAACCTGAGAATCCAGAATTCTGAACCCTACGCCTCTAGGTCCATGAAGTACCATCAGGAATCTGAGAATTCGGAATATAAGCCAAGTTAAGGATCTTTTGAGGAACCCAGAATCGAGGAGTTAGCACAGAAATCTACCGTAGTTCATCTAACAGAAGCCTATTAAAATAGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAATAAATCAAAATTCTGTCAACTGATAAAATCAAGGTGATATTATGATAAGCATTTTATCAGTTGACAAATTTTTCATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCGCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAGATTCAAAAGTTTGATCCGGGATCCCAGAAGCTTGACTAGTCAAATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAAAGATCAGATCATTTGGTGTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTATTTACCCAAGACCCT</canonical>
            <polymorphic>GCGCAGCCCTCCCCGATCGGAGGAGGACCGATGGGTTTTAGAGGAAAGAAGACAGCCAAGACGGTTCTGGTGGTGCACAAAATTTATGGCAAACATTAGGCTATGGGGGTAGAGGTATAGTCTTGAAATTGACCCTTTGATGGGTCAGCATATGGTGTATTTCCAACAAAAACCTGAGAATCCAGAATTCTGAACCCTACGCCTCTAGGTCCATGAAGTACCATCAGGAATCTGAGAATTCGGAATATAAGCCAAGTTAAGGATCTTTTGAGGAACCCAGAATCGAGGAGTTAGCACAGAAATCTACCGTAGTTCATCTAACAGAAGCCTATTAAAATAGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAATAAATCAAAATTCTGTCAACTGATAAAATCAAGGTGATATTATGATAAGCATTTTATCAGTTGACAAATTTTTCATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCRCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAGATTCAAAAGTTTGATCCGGGATCCCAGAAGCTTGACTAGTCAAATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAAAGATCAGATCATTTGGTGTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTATTTACCCAAGACCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 497 3</canonical_bands>
                <polymorphic_bands>997 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGTTCATCTAACAGAAGCCTATT</pcr_primer_p1>
		<pcr_primer_p2>ATTGGCTTAAACTTTGAATTCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTAGTTCATCTAACAGAAGCCTATTAAAATAGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAATAAATCAAAATTCTGTCAACTGATAAAATCAAGGTGATATTATGATAAGCATTTTATCAGTTGACAAATTTTTCATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCGCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAAT</canonical_amplicon>
		<polymorphic_amplicon>GTAGTTCATCTAACAGAAGCCTATTAAAATAGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAATAAATCAAAATTCTGTCAACTGATAAAATCAAGGTGATATTATGATAAGCATTTTATCAGTTGACAAATTTTTCATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCRCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23779</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>365222</contig_pos>
        <strand></strand>
        <context>gtgtgcrctt[T/G]cttctattcg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCGCTT</left_flank>
        <right_flank>CTTCTATTCGAGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTTTAAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCCTCCCCGATCGGAGGAGGACCGATGGGTTTTAGAGGAAAGAAGACAGCCAAGACGGTTCTGGTGGTGCACAAAATTTATGGCAAACATTAGGCTATGGGGGTAGAGGTATAGTCTTGAAATTGACCCTTTGATGGGTCAGCATATGGTGTATTTCCAACAAAAACCTGAGAATCCAGAATTCTGAACCCTACGCCTCTAGGTCCATGAAGTACCATCAGGAATCTGAGAATTCGGAATATAAGCCAAGTTAAGGATCTTTTGAGGAACCCAGAATCGAGGAGTTAGCACAGAAATCTACCGTAGTTCATCTAACAGAAGCCTATTAAAATAGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAATAAATCAAAATTCTGTCAACTGATAAAATCAAGGTGATATTATGATAAGCATTTTATCAGTTGACAAATTTTTCATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCGCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAGATTCAAAAGTTTGATCCGGGATCCCAGAAGCTTGACTAGTCAAATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAAAGATCAGATCATTTGGTGTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTATTTACCCAAGACCCTTGGC</canonical>
            <polymorphic>AGCCCTCCCCGATCGGAGGAGGACCGATGGGTTTTAGAGGAAAGAAGACAGCCAAGACGGTTCTGGTGGTGCACAAAATTTATGGCAAACATTAGGCTATGGGGGTAGAGGTATAGTCTTGAAATTGACCCTTTGATGGGTCAGCATATGGTGTATTTCCAACAAAAACCTGAGAATCCAGAATTCTGAACCCTACGCCTCTAGGTCCATGAAGTACCATCAGGAATCTGAGAATTCGGAATATAAGCCAAGTTAAGGATCTTTTGAGGAACCCAGAATCGAGGAGTTAGCACAGAAATCTACCGTAGTTCATCTAACAGAAGCCTATTAAAATAGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAATAAATCAAAATTCTGTCAACTGATAAAATCAAGGTGATATTATGATAAGCATTTTATCAGTTGACAAATTTTTCATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCGCTTKCTTCTATTCGAGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAGATTCAAAAGTTTGATCCGGGATCCCAGAAGCTTGACTAGTCAAATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAAAGATCAGATCATTTGGTGTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTATTTACCCAAGACCCTTGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGTTCATCTAACAGAAGCCTATT</pcr_primer_p1>
		<pcr_primer_p2>ATTGGCTTAAACTTTGAATTCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTAGTTCATCTAACAGAAGCCTATTAAAATAGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAATAAATCAAAATTCTGTCAACTGATAAAATCAAGGTGATATTATGATAAGCATTTTATCAGTTGACAAATTTTTCATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCGCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAAT</canonical_amplicon>
		<polymorphic_amplicon>GTAGTTCATCTAACAGAAGCCTATTAAAATAGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAATAAATCAAAATTCTGTCAACTGATAAAATCAAGGTGATATTATGATAAGCATTTTATCAGTTGACAAATTTTTCATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCGCTTKCTTCTATTCGAGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23780</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>365252</contig_pos>
        <strand>+</strand>
        <context>GCTGTAAAAA[C/T]TYGAGAATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACTTGACGGTGTGCGCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAA</left_flank>
        <right_flank>TTGAGAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTAGAGGAAAGAAGACAGCCAAGACGGTTCTGGTGGTGCACAAAATTTATGGCAAACATTAGGCTATGGGGGTAGAGGTATAGTCTTGAAATTGACCCTTTGATGGGTCAGCATATGGTGTATTTCCAACAAAAACCTGAGAATCCAGAATTCTGAACCCTACGCCTCTAGGTCCATGAAGTACCATCAGGAATCTGAGAATTCGGAATATAAGCCAAGTTAAGGATCTTTTGAGGAACCCAGAATCGAGGAGTTAGCACAGAAATCTACCGTAGTTCATCTAACAGAAGCCTATTAAAATAGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAATAAATCAAAATTCTGTCAACTGATAAAATCAAGGTGATATTATGATAAGCATTTTATCAGTTGACAAATTTTTCATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCGCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAGATTCAAAAGTTTGATCCGGGATCCCAGAAGCTTGACTAGTCAAATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAAAGATCAGATCATTTGGTGTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTATTTACCCAAGACCCTTGGCCTTATTGGACCCTTATAAGCCCCCCCCCCC</canonical>
            <polymorphic>GTTTTAGAGGAAAGAAGACAGCCAAGACGGTTCTGGTGGTGCACAAAATTTATGGCAAACATTAGGCTATGGGGGTAGAGGTATAGTCTTGAAATTGACCCTTTGATGGGTCAGCATATGGTGTATTTCCAACAAAAACCTGAGAATCCAGAATTCTGAACCCTACGCCTCTAGGTCCATGAAGTACCATCAGGAATCTGAGAATTCGGAATATAAGCCAAGTTAAGGATCTTTTGAGGAACCCAGAATCGAGGAGTTAGCACAGAAATCTACCGTAGTTCATCTAACAGAAGCCTATTAAAATAGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAATAAATCAAAATTCTGTCAACTGATAAAATCAAGGTGATATTATGATAAGCATTTTATCAGTTGACAAATTTTTCATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCGCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAAYTTGAGAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAGATTCAAAAGTTTGATCCGGGATCCCAGAAGCTTGACTAGTCAAATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAAAGATCAGATCATTTGGTGTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTATTTACCCAAGACCCTTGGCCTTATTGGACCCTTATAAGCCCCCCCCCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGTTCATCTAACAGAAGCCTATT</pcr_primer_p1>
		<pcr_primer_p2>AAGATCTAGGTTCTCTGCTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>GTAGTTCATCTAACAGAAGCCTATTAAAATAGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAATAAATCAAAATTCTGTCAACTGATAAAATCAAGGTGATATTATGATAAGCATTTTATCAGTTGACAAATTTTTCATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCGCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAACCTAGATCTT</canonical_amplicon>
		<polymorphic_amplicon>GTAGTTCATCTAACAGAAGCCTATTAAAATAGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAATAAATCAAAATTCTGTCAACTGATAAAATCAAGGTGATATTATGATAAGCATTTTATCAGTTGACAAATTTTTCATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCGCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAAYTTGAGAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAACCTAGATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23781</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>365254</contig_pos>
        <strand>+</strand>
        <context>TGTAAAAAYT[C/T]GAGAATTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTTGACGGTGTGCGCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAACT</left_flank>
        <right_flank>GAGAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAGAGGAAAGAAGACAGCCAAGACGGTTCTGGTGGTGCACAAAATTTATGGCAAACATTAGGCTATGGGGGTAGAGGTATAGTCTTGAAATTGACCCTTTGATGGGTCAGCATATGGTGTATTTCCAACAAAAACCTGAGAATCCAGAATTCTGAACCCTACGCCTCTAGGTCCATGAAGTACCATCAGGAATCTGAGAATTCGGAATATAAGCCAAGTTAAGGATCTTTTGAGGAACCCAGAATCGAGGAGTTAGCACAGAAATCTACCGTAGTTCATCTAACAGAAGCCTATTAAAATAGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAATAAATCAAAATTCTGTCAACTGATAAAATCAAGGTGATATTATGATAAGCATTTTATCAGTTGACAAATTTTTCATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCGCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAGATTCAAAAGTTTGATCCGGGATCCCAGAAGCTTGACTAGTCAAATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAAAGATCAGATCATTTGGTGTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTATTTACCCAAGACCCTTGGCCTTATTGGACCCTTATAAGCCCCCCCCCCCCC</canonical>
            <polymorphic>TTTAGAGGAAAGAAGACAGCCAAGACGGTTCTGGTGGTGCACAAAATTTATGGCAAACATTAGGCTATGGGGGTAGAGGTATAGTCTTGAAATTGACCCTTTGATGGGTCAGCATATGGTGTATTTCCAACAAAAACCTGAGAATCCAGAATTCTGAACCCTACGCCTCTAGGTCCATGAAGTACCATCAGGAATCTGAGAATTCGGAATATAAGCCAAGTTAAGGATCTTTTGAGGAACCCAGAATCGAGGAGTTAGCACAGAAATCTACCGTAGTTCATCTAACAGAAGCCTATTAAAATAGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAATAAATCAAAATTCTGTCAACTGATAAAATCAAGGTGATATTATGATAAGCATTTTATCAGTTGACAAATTTTTCATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCGCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAACTYGAGAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAGATTCAAAAGTTTGATCCGGGATCCCAGAAGCTTGACTAGTCAAATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAAAGATCAGATCATTTGGTGTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTATTTACCCAAGACCCTTGGCCTTATTGGACCCTTATAAGCCCCCCCCCCCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGTTCATCTAACAGAAGCCTATT</pcr_primer_p1>
		<pcr_primer_p2>AAGATCTAGGTTCTCTGCTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>GTAGTTCATCTAACAGAAGCCTATTAAAATAGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAATAAATCAAAATTCTGTCAACTGATAAAATCAAGGTGATATTATGATAAGCATTTTATCAGTTGACAAATTTTTCATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCGCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAACCTAGATCTT</canonical_amplicon>
		<polymorphic_amplicon>GTAGTTCATCTAACAGAAGCCTATTAAAATAGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAATAAATCAAAATTCTGTCAACTGATAAAATCAAGGTGATATTATGATAAGCATTTTATCAGTTGACAAATTTTTCATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCGCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAACTYGAGAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAACCTAGATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23782</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>365283</contig_pos>
        <strand>+</strand>
        <context>CCAATTTAAG[A/G]ATCTTCCGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAATTTAAG</left_flank>
        <right_flank>ATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGGTGGTGCACAAAATTTATGGCAAACATTAGGCTATGGGGGTAGAGGTATAGTCTTGAAATTGACCCTTTGATGGGTCAGCATATGGTGTATTTCCAACAAAAACCTGAGAATCCAGAATTCTGAACCCTACGCCTCTAGGTCCATGAAGTACCATCAGGAATCTGAGAATTCGGAATATAAGCCAAGTTAAGGATCTTTTGAGGAACCCAGAATCGAGGAGTTAGCACAGAAATCTACCGTAGTTCATCTAACAGAAGCCTATTAAAATAGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAATAAATCAAAATTCTGTCAACTGATAAAATCAAGGTGATATTATGATAAGCATTTTATCAGTTGACAAATTTTTCATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCGCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAGATTCAAAAGTTTGATCCGGGATCCCAGAAGCTTGACTAGTCAAATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAAAGATCAGATCATTTGGTGTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTATTTACCCAAGACCCTTGGCCTTATTGGACCCTTATAAGCCCCCCCCCCCCCACCTCCCTTATAAAGGGGCACAGATTATG</canonical>
            <polymorphic>TCTGGTGGTGCACAAAATTTATGGCAAACATTAGGCTATGGGGGTAGAGGTATAGTCTTGAAATTGACCCTTTGATGGGTCAGCATATGGTGTATTTCCAACAAAAACCTGAGAATCCAGAATTCTGAACCCTACGCCTCTAGGTCCATGAAGTACCATCAGGAATCTGAGAATTCGGAATATAAGCCAAGTTAAGGATCTTTTGAGGAACCCAGAATCGAGGAGTTAGCACAGAAATCTACCGTAGTTCATCTAACAGAAGCCTATTAAAATAGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAATAAATCAAAATTCTGTCAACTGATAAAATCAAGGTGATATTATGATAAGCATTTTATCAGTTGACAAATTTTTCATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCGCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAATTTAAGRATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAGATTCAAAAGTTTGATCCGGGATCCCAGAAGCTTGACTAGTCAAATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAAAGATCAGATCATTTGGTGTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTATTTACCCAAGACCCTTGGCCTTATTGGACCCTTATAAGCCCCCCCCCCCCCACCTCCCTTATAAAGGGGCACAGATTATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>303 196 194 131 101 38 25 7 5</canonical_bands>
                <polymorphic_bands>328 196 194 131 101 38 7 5</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>487 303 119 74 17</canonical_bands>
                <polymorphic_bands>790 119 74 17</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>431 303 196 45 25</canonical_bands>
                <polymorphic_bands>431 328 196 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGTTCATCTAACAGAAGCCTATT</pcr_primer_p1>
		<pcr_primer_p2>ATCTCAAAATGTTCCGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>GTAGTTCATCTAACAGAAGCCTATTAAAATAGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAATAAATCAAAATTCTGTCAACTGATAAAATCAAGGTGATATTATGATAAGCATTTTATCAGTTGACAAATTTTTCATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCGCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAGAT</canonical_amplicon>
		<polymorphic_amplicon>GTAGTTCATCTAACAGAAGCCTATTAAAATAGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAATAAATCAAAATTCTGTCAACTGATAAAATCAAGGTGATATTATGATAAGCATTTTATCAGTTGACAAATTTTTCATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCGCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAATTTAAGRATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23783</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>365359</contig_pos>
        <strand>+</strand>
        <context>CCGGGATCCC[A/G]GAAGCTTGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCTTGAAATTCGGAACATTTTGAGATTCAAAAGTTTGATCCGGGATCCC</left_flank>
        <right_flank>GAAGCTTGACTAGTCAAATTGAAGCCTAAAATCCTTATCTATCCCCAGTA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGTCAGCATATGGTGTATTTCCAACAAAAACCTGAGAATCCAGAATTCTGAACCCTACGCCTCTAGGTCCATGAAGTACCATCAGGAATCTGAGAATTCGGAATATAAGCCAAGTTAAGGATCTTTTGAGGAACCCAGAATCGAGGAGTTAGCACAGAAATCTACCGTAGTTCATCTAACAGAAGCCTATTAAAATAGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAATAAATCAAAATTCTGTCAACTGATAAAATCAAGGTGATATTATGATAAGCATTTTATCAGTTGACAAATTTTTCATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCGCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAGATTCAAAAGTTTGATCCGGGATCCCAGAAGCTTGACTAGTCAAATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAAAGATCAGATCATTTGGTGTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTATTTACCCAAGACCCTTGGCCTTATTGGACCCTTATAAGCCCCCCCCCCCCCACCTCCCTTATAAAGGGGCACAGATTATGATGGATGACAATAATCAAGAGCGTCTCCAGAAGGCTCGGGCATCATCTAGCTGCTATTTCGAATTATCTGTGAAAA</canonical>
            <polymorphic>GGGTCAGCATATGGTGTATTTCCAACAAAAACCTGAGAATCCAGAATTCTGAACCCTACGCCTCTAGGTCCATGAAGTACCATCAGGAATCTGAGAATTCGGAATATAAGCCAAGTTAAGGATCTTTTGAGGAACCCAGAATCGAGGAGTTAGCACAGAAATCTACCGTAGTTCATCTAACAGAAGCCTATTAAAATAGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAATAAATCAAAATTCTGTCAACTGATAAAATCAAGGTGATATTATGATAAGCATTTTATCAGTTGACAAATTTTTCATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCGCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAGATTCAAAAGTTTGATCCGGGATCCCRGAAGCTTGACTAGTCAAATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAAAGATCAGATCATTTGGTGTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTATTTACCCAAGACCCTTGGCCTTATTGGACCCTTATAAGCCCCCCCCCCCCCACCTCCCTTATAAAGGGGCACAGATTATGATGGATGACAATAATCAAGAGCGTCTCCAGAAGGCTCGGGCATCATCTAGCTGCTATTTCGAATTATCTGTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTCAAAGTTTAAGCCAATTT</pcr_primer_p1>
		<pcr_primer_p2>GATGTGATATTCTCATCAGGTGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAGATTCAAAAGTTTGATCCGGGATCCCAGAAGCTTGACTAGTCAAATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATC</canonical_amplicon>
		<polymorphic_amplicon>GAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAGATTCAAAAGTTTGATCCGGGATCCCRGAAGCTTGACTAGTCAAATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23784</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>365451</contig_pos>
        <strand>+</strand>
        <context>AGTTTAAAAA[A/C]CCCCCCTAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAA</left_flank>
        <right_flank>CCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAATTCGGAATATAAGCCAAGTTAAGGATCTTTTGAGGAACCCAGAATCGAGGAGTTAGCACAGAAATCTACCGTAGTTCATCTAACAGAAGCCTATTAAAATAGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAATAAATCAAAATTCTGTCAACTGATAAAATCAAGGTGATATTATGATAAGCATTTTATCAGTTGACAAATTTTTCATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCGCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAGATTCAAAAGTTTGATCCGGGATCCCAGAAGCTTGACTAGTCAAATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAAAGATCAGATCATTTGGTGTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTATTTACCCAAGACCCTTGGCCTTATTGGACCCTTATAAGCCCCCCCCCCCCCACCTCCCTTATAAAGGGGCACAGATTATGATGGATGACAATAATCAAGAGCGTCTCCAGAAGGCTCGGGCATCATCTAGCTGCTATTTCGAATTATCTGTGAAAATGTGAGAAGTTTTGGTCCAGTGGAAAAAAAGATGACGTGGCTTATAGAATATGCAAAATTAAACTAAAAGATCAAGGAATAAAAGTCAAGGC</canonical>
            <polymorphic>GAGAATTCGGAATATAAGCCAAGTTAAGGATCTTTTGAGGAACCCAGAATCGAGGAGTTAGCACAGAAATCTACCGTAGTTCATCTAACAGAAGCCTATTAAAATAGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAATAAATCAAAATTCTGTCAACTGATAAAATCAAGGTGATATTATGATAAGCATTTTATCAGTTGACAAATTTTTCATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCGCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAGATTCAAAAGTTTGATCCGGGATCCCAGAAGCTTGACTAGTCAAATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAAMCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAAAGATCAGATCATTTGGTGTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTATTTACCCAAGACCCTTGGCCTTATTGGACCCTTATAAGCCCCCCCCCCCCCACCTCCCTTATAAAGGGGCACAGATTATGATGGATGACAATAATCAAGAGCGTCTCCAGAAGGCTCGGGCATCATCTAGCTGCTATTTCGAATTATCTGTGAAAATGTGAGAAGTTTTGGTCCAGTGGAAAAAAAGATGACGTGGCTTATAGAATATGCAAAATTAAACTAAAAGATCAAGGAATAAAAGTCAAGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGAAGCCTAAAATCCTTATC</pcr_primer_p1>
		<pcr_primer_p2>AAATCAAATTTCGAGAGAGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTT</canonical_amplicon>
		<polymorphic_amplicon>AATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAAMCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23785</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>365466</contig_pos>
        <strand>+</strand>
        <context>CCTAGAACCC[C/T]TTAAAGCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCC</left_flank>
        <right_flank>TTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCCAAGTTAAGGATCTTTTGAGGAACCCAGAATCGAGGAGTTAGCACAGAAATCTACCGTAGTTCATCTAACAGAAGCCTATTAAAATAGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAATAAATCAAAATTCTGTCAACTGATAAAATCAAGGTGATATTATGATAAGCATTTTATCAGTTGACAAATTTTTCATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCGCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAGATTCAAAAGTTTGATCCGGGATCCCAGAAGCTTGACTAGTCAAATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAAAGATCAGATCATTTGGTGTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTATTTACCCAAGACCCTTGGCCTTATTGGACCCTTATAAGCCCCCCCCCCCCCACCTCCCTTATAAAGGGGCACAGATTATGATGGATGACAATAATCAAGAGCGTCTCCAGAAGGCTCGGGCATCATCTAGCTGCTATTTCGAATTATCTGTGAAAATGTGAGAAGTTTTGGTCCAGTGGAAAAAAAGATGACGTGGCTTATAGAATATGCAAAATTAAACTAAAAGATCAAGGAATAAAAGTCAAGGCTAAAAATTACAGTAA</canonical>
            <polymorphic>AAGCCAAGTTAAGGATCTTTTGAGGAACCCAGAATCGAGGAGTTAGCACAGAAATCTACCGTAGTTCATCTAACAGAAGCCTATTAAAATAGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAATAAATCAAAATTCTGTCAACTGATAAAATCAAGGTGATATTATGATAAGCATTTTATCAGTTGACAAATTTTTCATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCGCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAGATTCAAAAGTTTGATCCGGGATCCCAGAAGCTTGACTAGTCAAATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCYTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAAAGATCAGATCATTTGGTGTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTATTTACCCAAGACCCTTGGCCTTATTGGACCCTTATAAGCCCCCCCCCCCCCACCTCCCTTATAAAGGGGCACAGATTATGATGGATGACAATAATCAAGAGCGTCTCCAGAAGGCTCGGGCATCATCTAGCTGCTATTTCGAATTATCTGTGAAAATGTGAGAAGTTTTGGTCCAGTGGAAAAAAAGATGACGTGGCTTATAGAATATGCAAAATTAAACTAAAAGATCAAGGAATAAAAGTCAAGGCTAAAAATTACAGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>498 479 23</canonical_bands>
                <polymorphic_bands>521 479</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGAAGCCTAAAATCCTTATC</pcr_primer_p1>
		<pcr_primer_p2>AAATCAAATTTCGAGAGAGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTT</canonical_amplicon>
		<polymorphic_amplicon>AATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCYTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23786</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>365533</contig_pos>
        <strand>+</strand>
        <context>GACACGAAAG[A/T]ATCAKCAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAG</left_flank>
        <right_flank>ATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTAACAGAAGCCTATTAAAATAGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAATAAATCAAAATTCTGTCAACTGATAAAATCAAGGTGATATTATGATAAGCATTTTATCAGTTGACAAATTTTTCATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCGCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAGATTCAAAAGTTTGATCCGGGATCCCAGAAGCTTGACTAGTCAAATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAAAGATCAGATCATTTGGTGTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTATTTACCCAAGACCCTTGGCCTTATTGGACCCTTATAAGCCCCCCCCCCCCCACCTCCCTTATAAAGGGGCACAGATTATGATGGATGACAATAATCAAGAGCGTCTCCAGAAGGCTCGGGCATCATCTAGCTGCTATTTCGAATTATCTGTGAAAATGTGAGAAGTTTTGGTCCAGTGGAAAAAAAGATGACGTGGCTTATAGAATATGCAAAATTAAACTAAAAGATCAAGGAATAAAAGTCAAGGCTAAAAATTACAGTAATCCGGAAAATGAAGACATTGGACACCAGGAGTGCTCTATATCTAGGTTACGAAAATTCAAAAATGTC</canonical>
            <polymorphic>ATCTAACAGAAGCCTATTAAAATAGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAATAAATCAAAATTCTGTCAACTGATAAAATCAAGGTGATATTATGATAAGCATTTTATCAGTTGACAAATTTTTCATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCGCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAGATTCAAAAGTTTGATCCGGGATCCCAGAAGCTTGACTAGTCAAATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGWATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAAAGATCAGATCATTTGGTGTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTATTTACCCAAGACCCTTGGCCTTATTGGACCCTTATAAGCCCCCCCCCCCCCACCTCCCTTATAAAGGGGCACAGATTATGATGGATGACAATAATCAAGAGCGTCTCCAGAAGGCTCGGGCATCATCTAGCTGCTATTTCGAATTATCTGTGAAAATGTGAGAAGTTTTGGTCCAGTGGAAAAAAAGATGACGTGGCTTATAGAATATGCAAAATTAAACTAAAAGATCAAGGAATAAAAGTCAAGGCTAAAAATTACAGTAATCCGGAAAATGAAGACATTGGACACCAGGAGTGCTCTATATCTAGGTTACGAAAATTCAAAAATGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGAAGCCTAAAATCCTTATC</pcr_primer_p1>
		<pcr_primer_p2>AAATCAAATTTCGAGAGAGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTT</canonical_amplicon>
		<polymorphic_amplicon>AATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGWATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23787</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>365538</contig_pos>
        <strand>+</strand>
        <context>GAAAGWATCA[G/T]CAGAAATAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCA</left_flank>
        <right_flank>CAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGAAGCCTATTAAAATAGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAATAAATCAAAATTCTGTCAACTGATAAAATCAAGGTGATATTATGATAAGCATTTTATCAGTTGACAAATTTTTCATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCGCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAGATTCAAAAGTTTGATCCGGGATCCCAGAAGCTTGACTAGTCAAATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAAAGATCAGATCATTTGGTGTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTATTTACCCAAGACCCTTGGCCTTATTGGACCCTTATAAGCCCCCCCCCCCCCACCTCCCTTATAAAGGGGCACAGATTATGATGGATGACAATAATCAAGAGCGTCTCCAGAAGGCTCGGGCATCATCTAGCTGCTATTTCGAATTATCTGTGAAAATGTGAGAAGTTTTGGTCCAGTGGAAAAAAAGATGACGTGGCTTATAGAATATGCAAAATTAAACTAAAAGATCAAGGAATAAAAGTCAAGGCTAAAAATTACAGTAATCCGGAAAATGAAGACATTGGACACCAGGAGTGCTCTATATCTAGGTTACGAAAATTCAAAAATGTCGAAAA</canonical>
            <polymorphic>ACAGAAGCCTATTAAAATAGTCAACTTTGAGCTCAATTATCTCGATTCCTGTAAAATAAATCAAAATTCTGTCAACTGATAAAATCAAGGTGATATTATGATAAGCATTTTATCAGTTGACAAATTTTTCATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCGCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAGATTCAAAAGTTTGATCCGGGATCCCAGAAGCTTGACTAGTCAAATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAKCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAAAGATCAGATCATTTGGTGTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTATTTACCCAAGACCCTTGGCCTTATTGGACCCTTATAAGCCCCCCCCCCCCCACCTCCCTTATAAAGGGGCACAGATTATGATGGATGACAATAATCAAGAGCGTCTCCAGAAGGCTCGGGCATCATCTAGCTGCTATTTCGAATTATCTGTGAAAATGTGAGAAGTTTTGGTCCAGTGGAAAAAAAGATGACGTGGCTTATAGAATATGCAAAATTAAACTAAAAGATCAAGGAATAAAAGTCAAGGCTAAAAATTACAGTAATCCGGAAAATGAAGACATTGGACACCAGGAGTGCTCTATATCTAGGTTACGAAAATTCAAAAATGTCGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGAAGCCTAAAATCCTTATC</pcr_primer_p1>
		<pcr_primer_p2>AAATCAAATTTCGAGAGAGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTT</canonical_amplicon>
		<polymorphic_amplicon>AATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAKCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23788</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>365596</contig_pos>
        <strand>+</strand>
        <context>CCTATCTTAT[A/T]TTCTCTCTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTAT</left_flank>
        <right_flank>TTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCAAAATTCTGTCAACTGATAAAATCAAGGTGATATTATGATAAGCATTTTATCAGTTGACAAATTTTTCATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCGCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAGATTCAAAAGTTTGATCCGGGATCCCAGAAGCTTGACTAGTCAAATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAAAGATCAGATCATTTGGTGTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTATTTACCCAAGACCCTTGGCCTTATTGGACCCTTATAAGCCCCCCCCCCCCCACCTCCCTTATAAAGGGGCACAGATTATGATGGATGACAATAATCAAGAGCGTCTCCAGAAGGCTCGGGCATCATCTAGCTGCTATTTCGAATTATCTGTGAAAATGTGAGAAGTTTTGGTCCAGTGGAAAAAAAGATGACGTGGCTTATAGAATATGCAAAATTAAACTAAAAGATCAAGGAATAAAAGTCAAGGCTAAAAATTACAGTAATCCGGAAAATGAAGACATTGGACACCAGGAGTGCTCTATATCTAGGTTACGAAAATTCAAAAATGTCGAAAAATGGAATATGTTCTGGAAGAGTGCTCTATACACCCCCAAAATAAGCGGACACATGACA</canonical>
            <polymorphic>AATCAAAATTCTGTCAACTGATAAAATCAAGGTGATATTATGATAAGCATTTTATCAGTTGACAAATTTTTCATATCTCTCACAGGAAATGAGATGATTGAGCTTAAACTTGACGGTGTGCGCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAGATTCAAAAGTTTGATCCGGGATCCCAGAAGCTTGACTAGTCAAATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATWTTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAAAGATCAGATCATTTGGTGTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTATTTACCCAAGACCCTTGGCCTTATTGGACCCTTATAAGCCCCCCCCCCCCCACCTCCCTTATAAAGGGGCACAGATTATGATGGATGACAATAATCAAGAGCGTCTCCAGAAGGCTCGGGCATCATCTAGCTGCTATTTCGAATTATCTGTGAAAATGTGAGAAGTTTTGGTCCAGTGGAAAAAAAGATGACGTGGCTTATAGAATATGCAAAATTAAACTAAAAGATCAAGGAATAAAAGTCAAGGCTAAAAATTACAGTAATCCGGAAAATGAAGACATTGGACACCAGGAGTGCTCTATATCTAGGTTACGAAAATTCAAAAATGTCGAAAAATGGAATATGTTCTGGAAGAGTGCTCTATACACCCCCAAAATAAGCGGACACATGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCCAGTAACTCTAAAAATCAA</pcr_primer_p1>
		<pcr_primer_p2>GATCTTTCTAGCGAACGTGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAAAGATC</canonical_amplicon>
		<polymorphic_amplicon>CCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATWTTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAAAGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23789</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>365703</contig_pos>
        <strand></strand>
        <context>AGACCACTGT[A/G]TTTACCCAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATCATTTGGTGTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGT</left_flank>
        <right_flank>TTTACCCAAGACCCTTGGCCTTATTGGACCCTTATAAGCCCCCCCCCCCC</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTGACGGTGTGCGCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAGATTCAAAAGTTTGATCCGGGATCCCAGAAGCTTGACTAGTCAAATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAAAGATCAGATCATTTGGTGTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTATTTACCCAAGACCCTTGGCCTTATTGGACCCTTATAAGCCCCCCCCCCCCCACCTCCCTTATAAAGGGGCACAGATTATGATGGATGACAATAATCAAGAGCGTCTCCAGAAGGCTCGGGCATCATCTAGCTGCTATTTCGAATTATCTGTGAAAATGTGAGAAGTTTTGGTCCAGTGGAAAAAAAGATGACGTGGCTTATAGAATATGCAAAATTAAACTAAAAGATCAAGGAATAAAAGTCAAGGCTAAAAATTACAGTAATCCGGAAAATGAAGACATTGGACACCAGGAGTGCTCTATATCTAGGTTACGAAAATTCAAAAATGTCGAAAAATGGAATATGTTCTGGAAGAGTGCTCTATACACCCCCAAAATAAGCGGACACATGACAAAAAGTTTATAATAGGGGCGTGCGGCTTTTTTTCTCGACCAAATACATGGGCAAACTCTCCTTCCACACACATGCAAAGGTCCGGTCCCTTTTCTCTCTCTCTATGC</canonical>
            <polymorphic>ACTTGACGGTGTGCGCTTTCTTCTATTCGAGGAAGTACGCTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAGATTCAAAAGTTTGATCCGGGATCCCAGAAGCTTGACTAGTCAAATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAAAGATCAGATCATTTGGTGTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTRTTTACCCAAGACCCTTGGCCTTATTGGACCCTTATAAGCCCCCCCCCCCCCACCTCCCTTATAAAGGGGCACAGATTATGATGGATGACAATAATCAAGAGCGTCTCCAGAAGGCTCGGGCATCATCTAGCTGCTATTTCGAATTATCTGTGAAAATGTGAGAAGTTTTGGTCCAGTGGAAAAAAAGATGACGTGGCTTATAGAATATGCAAAATTAAACTAAAAGATCAAGGAATAAAAGTCAAGGCTAAAAATTACAGTAATCCGGAAAATGAAGACATTGGACACCAGGAGTGCTCTATATCTAGGTTACGAAAATTCAAAAATGTCGAAAAATGGAATATGTTCTGGAAGAGTGCTCTATACACCCCCAAAATAAGCGGACACATGACAAAAAGTTTATAATAGGGGCGTGCGGCTTTTTTTCTCGACCAAATACATGGGCAAACTCTCCTTCCACACACATGCAAAGGTCCGGTCCCTTTTCTCTCTCTCTATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCTAATTGGTCACCTATCTTA</pcr_primer_p1>
		<pcr_primer_p2>AGACGCTCTTGATTATTGTCAT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>GCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAAAGATCAGATCATTTGGTGTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTATTTACCCAAGACCCTTGGCCTTATTGGACCCTTATAAGCCCCCCCCCCCCCACCTCCCTTATAAAGGGGCACAGATTATGATGGATGACAATAATCAAGAGCGTCT</canonical_amplicon>
		<polymorphic_amplicon>GCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAAAGATCAGATCATTTGGTGTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTRTTTACCCAAGACCCTTGGCCTTATTGGACCCTTATAAGCCCCCCCCCCCCCACCTCCCTTATAAAGGGGCACAGATTATGATGGATGACAATAATCAAGAGCGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23790</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>365742</contig_pos>
        <strand>+</strand>
        <context>CCCTTATAAG[G/T]CCCCCCCCCC</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAGACCACTGTATTTACCCAAGACCCTTGGCCTTATTGGACCCTTATAAG</left_flank>
        <right_flank>CCCCCCCCCCCCACCTCCCTTATAAAGGGGCACAGATTATGATGGATGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAGATTCAAAAGTTTGATCCGGGATCCCAGAAGCTTGACTAGTCAAATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAAAGATCAGATCATTTGGTGTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTATTTACCCAAGACCCTTGGCCTTATTGGACCCTTATAAGCCCCCCCCCCCCCACCTCCCTTATAAAGGGGCACAGATTATGATGGATGACAATAATCAAGAGCGTCTCCAGAAGGCTCGGGCATCATCTAGCTGCTATTTCGAATTATCTGTGAAAATGTGAGAAGTTTTGGTCCAGTGGAAAAAAAGATGACGTGGCTTATAGAATATGCAAAATTAAACTAAAAGATCAAGGAATAAAAGTCAAGGCTAAAAATTACAGTAATCCGGAAAATGAAGACATTGGACACCAGGAGTGCTCTATATCTAGGTTACGAAAATTCAAAAATGTCGAAAAATGGAATATGTTCTGGAAGAGTGCTCTATACACCCCCAAAATAAGCGGACACATGACAAAAAGTTTATAATAGGGGCGTGCGGCTTTTTTTCTCGACCAAATACATGGGCAAACTCTCCTTCCACACACATGCAAAGGTCCGGTCCCTTTTCTCTCTCTCTATGCCAATCTTTCATGGCTCACAGAGCCAACCCCACCCGAAAT</canonical>
            <polymorphic>CTGTAAAAACTTGAGAATTCAAAGTTTAAGCCAATTTAAGGATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAGATTCAAAAGTTTGATCCGGGATCCCAGAAGCTTGACTAGTCAAATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAAAGATCAGATCATTTGGTGTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTATTTACCCAAGACCCTTGGCCTTATTGGACCCTTATAAGKCCCCCCCCCCCCACCTCCCTTATAAAGGGGCACAGATTATGATGGATGACAATAATCAAGAGCGTCTCCAGAAGGCTCGGGCATCATCTAGCTGCTATTTCGAATTATCTGTGAAAATGTGAGAAGTTTTGGTCCAGTGGAAAAAAAGATGACGTGGCTTATAGAATATGCAAAATTAAACTAAAAGATCAAGGAATAAAAGTCAAGGCTAAAAATTACAGTAATCCGGAAAATGAAGACATTGGACACCAGGAGTGCTCTATATCTAGGTTACGAAAATTCAAAAATGTCGAAAAATGGAATATGTTCTGGAAGAGTGCTCTATACACCCCCAAAATAAGCGGACACATGACAAAAAGTTTATAATAGGGGCGTGCGGCTTTTTTTCTCGACCAAATACATGGGCAAACTCTCCTTCCACACACATGCAAAGGTCCGGTCCCTTTTCTCTCTCTCTATGCCAATCTTTCATGGCTCACAGAGCCAACCCCACCCGAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>171 164 133 95 91 76 66 51 41 30 20 20 17 16 9</canonical_bands>
                <polymorphic_bands>171 164 133 96 95 91 66 51 41 30 20 17 16 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCCTGTTTTTCAGCAGGTA</pcr_primer_p1>
		<pcr_primer_p2>CATATTCTATAAGCCACGTCATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTATTTACCCAAGACCCTTGGCCTTATTGGACCCTTATAAGCCCCCCCCCCCCCACCTCCCTTATAAAGGGGCACAGATTATGATGGATGACAATAATCAAGAGCGTCTCCAGAAGGCTCGGGCATCATCTAGCTGCTATTTCGAATTATCTGTGAAAATGTGAGAAGTTTTGGTCCAGTGGAAAAAAAGATGACGTGGCTTATAGAATATG</canonical_amplicon>
		<polymorphic_amplicon>GTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTATTTACCCAAGACCCTTGGCCTTATTGGACCCTTATAAGKCCCCCCCCCCCCACCTCCCTTATAAAGGGGCACAGATTATGATGGATGACAATAATCAAGAGCGTCTCCAGAAGGCTCGGGCATCATCTAGCTGCTATTTCGAATTATCTGTGAAAATGTGAGAAGTTTTGGTCCAGTGGAAAAAAAGATGACGTGGCTTATAGAATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23791</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>365779</contig_pos>
        <strand></strand>
        <context>GGGGCACAGA[T/G]TATGATGGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GGACCCTTATAAGCCCCCCCCCCCCCACCTCCCTTATAAAGGGGCACAGA</left_flank>
        <right_flank>TATGATGGATGACAATAATCAAGAGCGTCTCCAGAAGGCTCGGGCATCAT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAGATTCAAAAGTTTGATCCGGGATCCCAGAAGCTTGACTAGTCAAATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAAAGATCAGATCATTTGGTGTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTATTTACCCAAGACCCTTGGCCTTATTGGACCCTTATAAGCCCCCCCCCCCCCACCTCCCTTATAAAGGGGCACAGATTATGATGGATGACAATAATCAAGAGCGTCTCCAGAAGGCTCGGGCATCATCTAGCTGCTATTTCGAATTATCTGTGAAAATGTGAGAAGTTTTGGTCCAGTGGAAAAAAAGATGACGTGGCTTATAGAATATGCAAAATTAAACTAAAAGATCAAGGAATAAAAGTCAAGGCTAAAAATTACAGTAATCCGGAAAATGAAGACATTGGACACCAGGAGTGCTCTATATCTAGGTTACGAAAATTCAAAAATGTCGAAAAATGGAATATGTTCTGGAAGAGTGCTCTATACACCCCCAAAATAAGCGGACACATGACAAAAAGTTTATAATAGGGGCGTGCGGCTTTTTTTCTCGACCAAATACATGGGCAAACTCTCCTTCCACACACATGCAAAGGTCCGGTCCCTTTTCTCTCTCTCTATGCCAATCTTTCATGGCTCACAGAGCCAACCCCACCCGAAATTTGAGCCCCCTTTTTCGGCGCCCCAAAAACTGGAAAA</canonical>
            <polymorphic>AAGGATCTTCCGAAGAGCAGAGAACCTAGATCTTGAAATTCGGAACATTTTGAGATTCAAAAGTTTGATCCGGGATCCCAGAAGCTTGACTAGTCAAATTGAAGCCTAAAATCCTTATCTATCCCCAGTAACTCTAAAAATCAAGCTCTAACCATTCTGAAAGTTTAAAAACCCCCCCTAGAACCCTTTAAAGCAAACAAACACCTGATGAGAATATCACATCAATTCGTCTTGTTCATTTCCGACACGAAAGTATCAGCAGAAATAGATCAATCAAGCCTCCCCCCTTCCCGCTCTAATTGGTCACCTATCTTATTTTCTCTCTCTCTCTCTCGAAATTTGATTTTCATCATCACGTTCGCTAGAAAGATCAGATCATTTGGTGTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTATTTACCCAAGACCCTTGGCCTTATTGGACCCTTATAAGCCCCCCCCCCCCCACCTCCCTTATAAAGGGGCACAGAKTATGATGGATGACAATAATCAAGAGCGTCTCCAGAAGGCTCGGGCATCATCTAGCTGCTATTTCGAATTATCTGTGAAAATGTGAGAAGTTTTGGTCCAGTGGAAAAAAAGATGACGTGGCTTATAGAATATGCAAAATTAAACTAAAAGATCAAGGAATAAAAGTCAAGGCTAAAAATTACAGTAATCCGGAAAATGAAGACATTGGACACCAGGAGTGCTCTATATCTAGGTTACGAAAATTCAAAAATGTCGAAAAATGGAATATGTTCTGGAAGAGTGCTCTATACACCCCCAAAATAAGCGGACACATGACAAAAAGTTTATAATAGGGGCGTGCGGCTTTTTTTCTCGACCAAATACATGGGCAAACTCTCCTTCCACACACATGCAAAGGTCCGGTCCCTTTTCTCTCTCTCTATGCCAATCTTTCATGGCTCACAGAGCCAACCCCACCCGAAATTTGAGCCCCCTTTTTCGGCGCCCCAAAAACTGGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCCTGTTTTTCAGCAGGTA</pcr_primer_p1>
		<pcr_primer_p2>CATATTCTATAAGCCACGTCATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTATTTACCCAAGACCCTTGGCCTTATTGGACCCTTATAAGCCCCCCCCCCCCCACCTCCCTTATAAAGGGGCACAGATTATGATGGATGACAATAATCAAGAGCGTCTCCAGAAGGCTCGGGCATCATCTAGCTGCTATTTCGAATTATCTGTGAAAATGTGAGAAGTTTTGGTCCAGTGGAAAAAAAGATGACGTGGCTTATAGAATATG</canonical_amplicon>
		<polymorphic_amplicon>GTCCTGTTTTTCAGCAGGTAGGGGATTACAGACCACTGTATTTACCCAAGACCCTTGGCCTTATTGGACCCTTATAAGCCCCCCCCCCCCCACCTCCCTTATAAAGGGGCACAGAKTATGATGGATGACAATAATCAAGAGCGTCTCCAGAAGGCTCGGGCATCATCTAGCTGCTATTTCGAATTATCTGTGAAAATGTGAGAAGTTTTGGTCCAGTGGAAAAAAAGATGACGTGGCTTATAGAATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23792</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>422031</contig_pos>
        <strand>+</strand>
        <context>AGGATTCTAG[A/G]ATTGTTTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGTAGTCTAGAAAATTTCCAACATTTTGAGACATAAATAAGGATTCTAG</left_flank>
        <right_flank>ATTGTTTTGAGTTGAGTTATGGATACCAGTAAATTTACGCCCCTCCGGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAACGAAAATGGAGAGATTGTGCAAAAATCCGTCTGGATGCAGATCAATACAACGAGAGACATTTCGTTTATCGATTCAATGTGACCGCCCGTGATCATGGAACAAATCAGCTGAGCAATACGGCAATGGTACACATTCGGACAGAGAATACCAACGATGAAAGTGCCGTATTCCTGCCAACGAGTCATTACACAGCGTTTGTGGCCGAGGATGCTCAAGGAGGAACACCTGTTATACAGATACAGGTATGCGTAGTTTGTAGTTTGTAGTCTAAAAAATTTCCAACATTTTGAGACAAAAATGAGAGTTGTAGGATGATTTTGAGTCGAGTTATGAGCAATTTAGAAAAACATTGAAAATTTTATAAACTAAAATTTTTTGGTTTTTTTTTCAATTGAAATATTTTTAAAAGATTTTTTATGATTTTTGGAAACAAATATTTGTAGTTTGTAGTCTAGAAAATTTCCAACATTTTGAGACATAAATAAGGATTCTAGGATTGTTTTGAGTTGAGTTATGGATACCAGTAAATTTACGCCCCTCCGGGGTTGAACCTCATGGGCTCCGCTTACAGTACCCGTAATCTCATGAAGAGGTTTCGACACTTTTATTCAGGGAATACTTTTTCGGGGTTTAGAAGCTTTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTTTGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGGCATATTTAAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAGGGTCACGTAAAGCGTTTTTATTTTTCAAGCTTTTCAAAAGCTGACATCCTTACATGGGGACCAACAGACGCGTGTAGCG</canonical>
            <polymorphic>TAAACGAAAATGGAGAGATTGTGCAAAAATCCGTCTGGATGCAGATCAATACAACGAGAGACATTTCGTTTATCGATTCAATGTGACCGCCCGTGATCATGGAACAAATCAGCTGAGCAATACGGCAATGGTACACATTCGGACAGAGAATACCAACGATGAAAGTGCCGTATTCCTGCCAACGAGTCATTACACAGCGTTTGTGGCCGAGGATGCTCAAGGAGGAACACCTGTTATACAGATACAGGTATGCGTAGTTTGTAGTTTGTAGTCTAAAAAATTTCCAACATTTTGAGACAAAAATGAGAGTTGTAGGATGATTTTGAGTCGAGTTATGAGCAATTTAGAAAAACATTGAAAATTTTATAAACTAAAATTTTTTGGTTTTTTTTTCAATTGAAATATTTTTAAAAGATTTTTTATGATTTTTGGAAACAAATATTTGTAGTTTGTAGTCTAGAAAATTTCCAACATTTTGAGACATAAATAAGGATTCTAGRATTGTTTTGAGTTGAGTTATGGATACCAGTAAATTTACGCCCCTCCGGGGTTGAACCTCATGGGCTCCGCTTACAGTACCCGTAATCTCATGAAGAGGTTTCGACACTTTTATTCAGGGAATACTTTTTCGGGGTTTAGAAGCTTTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTTTGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGGCATATTTAAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAGGGTCACGTAAAGCGTTTTTATTTTTCAAGCTTTTCAAAAGCTGACATCCTTACATGGGGACCAACAGACGCGTGTAGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAGCAATTTAGAAAAACATTG</pcr_primer_p1>
		<pcr_primer_p2>CAGAGTGACATTAAGCGTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>403</pcr_amplicon_size>
		<canonical_amplicon>ATGAGCAATTTAGAAAAACATTGAAAATTTTATAAACTAAAATTTTTTGGTTTTTTTTTCAATTGAAATATTTTTAAAAGATTTTTTATGATTTTTGGAAACAAATATTTGTAGTTTGTAGTCTAGAAAATTTCCAACATTTTGAGACATAAATAAGGATTCTAGGATTGTTTTGAGTTGAGTTATGGATACCAGTAAATTTACGCCCCTCCGGGGTTGAACCTCATGGGCTCCGCTTACAGTACCCGTAATCTCATGAAGAGGTTTCGACACTTTTATTCAGGGAATACTTTTTCGGGGTTTAGAAGCTTTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTG</canonical_amplicon>
		<polymorphic_amplicon>ATGAGCAATTTAGAAAAACATTGAAAATTTTATAAACTAAAATTTTTTGGTTTTTTTTTCAATTGAAATATTTTTAAAAGATTTTTTATGATTTTTGGAAACAAATATTTGTAGTTTGTAGTCTAGAAAATTTCCAACATTTTGAGACATAAATAAGGATTCTAGRATTGTTTTGAGTTGAGTTATGGATACCAGTAAATTTACGCCCCTCCGGGGTTGAACCTCATGGGCTCCGCTTACAGTACCCGTAATCTCATGAAGAGGTTTCGACACTTTTATTCAGGGAATACTTTTTCGGGGTTTAGAAGCTTTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23793</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>425088</contig_pos>
        <strand></strand>
        <context>acccacccaa[C/T]tttgagctta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGATTTTGGGATGCTAGAGACCATATCTGCTATAATAAAAACCCACCCAA</left_flank>
        <right_flank>TTTGAGCTTATATATCTCGGTTACTGTAAGAGATATCAAAAATTAGTAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTTCTGTGTAGCTAGCAAACTGATTCCAAAGAAGTTTGTACGGTGAAATATGGAATGTTTTGGAAAATAAAATTACAGACTGCGCCCGATACTCAGAGATTGCGAAAATCATGGAAGGAACCTATAAATCGGACCCACCAACAATAGTAAAAGTGGAAGCAACAGATGATGATTCATCAGCGAATGGAGATATCGTATATTCATTGTATTACACACAATCGGAGAGTCGAAAAGCATTTGTGATAGATAGACATACGGGAGTGTTAACACCATCCCCGCATGTTGTATTCGATCGGGAGACACGACCACGAGAGGATGTTACCGTTAAGGTAGGGCTACAAACTACAAGAATTCTCCTTGAAGAATATTCTGGAAGGTCCAACCTTCTGCATTTTCAAGCAAGCTAGATCCTAACAAGTGAAAAAATCTTAGATTTTGAAATTCTGGAGATTTTGGGATGCTAGAGACCATATCTGCTATAATAAAAACCCACCCAACTTTGAGCTTATATATCTCGGTTACTGTAAGAGATATCAAAAATTAGTAAACTAATAAAATGTTGCTGATATCATGATAAACAATTTATTAGTTGACAATTTTTTGATACCTCTTACAGGAATTAAGATAAATTAGATTGAAGGGAGAGGTGCCCCCCCCCCCCCCTCTTTGCCCCTTACCCCTCGGGAGGTCCGACTACTTTGAGCTCAATTATCTCGGCTCCTATAAAAAATATCAAAAATTAGTAAACTATTAAAATGTTTGTGTTAATTTGATAAAGATTATATCAGTTGACAACTTTTTGATAGCTCTTACAGAAATTGAGATAAATAAACTTAAAGGGACAGCCCCCCCCCCCCTCTCGGGAGGTCCCATTACTTTGAGCTCAATTATCTCGGCTCCTCTAAAAGATATCAAAAATGTGCCAATGGATGAAATGTTTATCATAATATCACCAATAATTTATCAATTGACCGACTTTTTTATCTCAAACAAAAGAT</canonical>
            <polymorphic>GCTTTCTGTGTAGCTAGCAAACTGATTCCAAAGAAGTTTGTACGGTGAAATATGGAATGTTTTGGAAAATAAAATTACAGACTGCGCCCGATACTCAGAGATTGCGAAAATCATGGAAGGAACCTATAAATCGGACCCACCAACAATAGTAAAAGTGGAAGCAACAGATGATGATTCATCAGCGAATGGAGATATCGTATATTCATTGTATTACACACAATCGGAGAGTCGAAAAGCATTTGTGATAGATAGACATACGGGAGTGTTAACACCATCCCCGCATGTTGTATTCGATCGGGAGACACGACCACGAGAGGATGTTACCGTTAAGGTAGGGCTACAAACTACAAGAATTCTCCTTGAAGAATATTCTGGAAGGTCCAACCTTCTGCATTTTCAAGCAAGCTAGATCCTAACAAGTGAAAAAATCTTAGATTTTGAAATTCTGGAGATTTTGGGATGCTAGAGACCATATCTGCTATAATAAAAACCCACCCAAYTTTGAGCTTATATATCTCGGTTACTGTAAGAGATATCAAAAATTAGTAAACTAATAAAATGTTGCTGATATCATGATAAACAATTTATTAGTTGACAATTTTTTGATACCTCTTACAGGAATTAAGATAAATTAGATTGAAGGGAGAGGTGCCCCCCCCCCCCCCTCTTTGCCCCTTACCCCTCGGGAGGTCCGACTACTTTGAGCTCAATTATCTCGGCTCCTATAAAAAATATCAAAAATTAGTAAACTATTAAAATGTTTGTGTTAATTTGATAAAGATTATATCAGTTGACAACTTTTTGATAGCTCTTACAGAAATTGAGATAAATAAACTTAAAGGGACAGCCCCCCCCCCCCTCTCGGGAGGTCCCATTACTTTGAGCTCAATTATCTCGGCTCCTCTAAAAGATATCAAAAATGTGCCAATGGATGAAATGTTTATCATAATATCACCAATAATTTATCAATTGACCGACTTTTTTATCTCAAACAAAAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAGATCCTAACAAGTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGACAAAATCCAATCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>674</pcr_amplicon_size>
		<canonical_amplicon>GCTAGATCCTAACAAGTGAAAAAATCTTAGATTTTGAAATTCTGGAGATTTTGGGATGCTAGAGACCATATCTGCTATAATAAAAACCCACCCAACTTTGAGCTTATATATCTCGG</canonical_amplicon>
		<polymorphic_amplicon>GCTAGATCCTAACAAGTGAAAAAATCTTAGATTTTGAAATTCTGGAGATTTTGGGATGCTAGAGACCATATCTGCTATAATAAAAACCCACCCAAYTTTGAGCTTATATATCTCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23794</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>425200</contig_pos>
        <strand></strand>
        <context>tttgatacct[C/T]tyacaggaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGCTGATATCATGATAAACAATTTATTAGTTGACAATTTTTTGATACCT</left_flank>
        <right_flank>TTACAGGAATTAAGATAAATTAGATTGAAGGGAGAGGTGCCCCCCCCCCC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGAAGGAACCTATAAATCGGACCCACCAACAATAGTAAAAGTGGAAGCAACAGATGATGATTCATCAGCGAATGGAGATATCGTATATTCATTGTATTACACACAATCGGAGAGTCGAAAAGCATTTGTGATAGATAGACATACGGGAGTGTTAACACCATCCCCGCATGTTGTATTCGATCGGGAGACACGACCACGAGAGGATGTTACCGTTAAGGTAGGGCTACAAACTACAAGAATTCTCCTTGAAGAATATTCTGGAAGGTCCAACCTTCTGCATTTTCAAGCAAGCTAGATCCTAACAAGTGAAAAAATCTTAGATTTTGAAATTCTGGAGATTTTGGGATGCTAGAGACCATATCTGCTATAATAAAAACCCACCCAACTTTGAGCTTATATATCTCGGTTACTGTAAGAGATATCAAAAATTAGTAAACTAATAAAATGTTGCTGATATCATGATAAACAATTTATTAGTTGACAATTTTTTGATACCTCTTACAGGAATTAAGATAAATTAGATTGAAGGGAGAGGTGCCCCCCCCCCCCCCTCTTTGCCCCTTACCCCTCGGGAGGTCCGACTACTTTGAGCTCAATTATCTCGGCTCCTATAAAAAATATCAAAAATTAGTAAACTATTAAAATGTTTGTGTTAATTTGATAAAGATTATATCAGTTGACAACTTTTTGATAGCTCTTACAGAAATTGAGATAAATAAACTTAAAGGGACAGCCCCCCCCCCCCTCTCGGGAGGTCCCATTACTTTGAGCTCAATTATCTCGGCTCCTCTAAAAGATATCAAAAATGTGCCAATGGATGAAATGTTTATCATAATATCACCAATAATTTATCAATTGACCGACTTTTTTATCTCAAACAAAAGATAAATTGGCTCAAAGTTAAAAGCTAGATTTTTCCAGGCAACAGATCGAGGTGATCGTCCACTGATTGGATTTTGTCAATTCTCGGTTGAAGTCGTCGACGTGAATGACAATGC</canonical>
            <polymorphic>ATGGAAGGAACCTATAAATCGGACCCACCAACAATAGTAAAAGTGGAAGCAACAGATGATGATTCATCAGCGAATGGAGATATCGTATATTCATTGTATTACACACAATCGGAGAGTCGAAAAGCATTTGTGATAGATAGACATACGGGAGTGTTAACACCATCCCCGCATGTTGTATTCGATCGGGAGACACGACCACGAGAGGATGTTACCGTTAAGGTAGGGCTACAAACTACAAGAATTCTCCTTGAAGAATATTCTGGAAGGTCCAACCTTCTGCATTTTCAAGCAAGCTAGATCCTAACAAGTGAAAAAATCTTAGATTTTGAAATTCTGGAGATTTTGGGATGCTAGAGACCATATCTGCTATAATAAAAACCCACCCAACTTTGAGCTTATATATCTCGGTTACTGTAAGAGATATCAAAAATTAGTAAACTAATAAAATGTTGCTGATATCATGATAAACAATTTATTAGTTGACAATTTTTTGATACCTYTTACAGGAATTAAGATAAATTAGATTGAAGGGAGAGGTGCCCCCCCCCCCCCCTCTTTGCCCCTTACCCCTCGGGAGGTCCGACTACTTTGAGCTCAATTATCTCGGCTCCTATAAAAAATATCAAAAATTAGTAAACTATTAAAATGTTTGTGTTAATTTGATAAAGATTATATCAGTTGACAACTTTTTGATAGCTCTTACAGAAATTGAGATAAATAAACTTAAAGGGACAGCCCCCCCCCCCCTCTCGGGAGGTCCCATTACTTTGAGCTCAATTATCTCGGCTCCTCTAAAAGATATCAAAAATGTGCCAATGGATGAAATGTTTATCATAATATCACCAATAATTTATCAATTGACCGACTTTTTTATCTCAAACAAAAGATAAATTGGCTCAAAGTTAAAAGCTAGATTTTTCCAGGCAACAGATCGAGGTGATCGTCCACTGATTGGATTTTGTCAATTCTCGGTTGAAGTCGTCGACGTGAATGACAATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAGATCCTAACAAGTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGACAAAATCCAATCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>674</pcr_amplicon_size>
		<canonical_amplicon>GCTAGATCCTAACAAGTGAAAAAATCTTAGATTTTGAAATTCTGGAGATTTTGGGATGCTAGAGACCATATCTGCTATAATAAAAACCCACCCAACTTTGAGCTTATATATCTCGGTTACTGTAAGAGATATCAAAAATTAGTAAACTAATAAAATGTTGCTGATATCATGATAAACAATTTATTAGTTGACAATTTTTTGATACCTCTTACAGGAATTAAGATAAATTAGATTGAAGGGAGAGGTGCCCCCCCCCCCCCCTCTTTGCCCCTTACCCCTCGGGAGGTCCGACTACTTTGAGCTCAATTATCTCGGCTCCTATAAAAAATATCAAAAATTAGTAAACTATTAAAATGTTTGTGTTAATTTGATAAAGATTATATCAGTTGACAACTTTTTGATAGCTCTTACAGAAATTGAGATAAATAAACTTAAAGGGACAGCCCCCCCCCCCCTCTCGGGAGGTCCCATTACTTTGAGCTCAATTATCTCGGCTCCTCTAAAAGATATCAAAAATGTGCCAATGGATGAAATGTTTATCATAATATCACCAATAATTTATCAATTGACCGACTTTTTTATCTCAAACAAAAGATAAATTGGCTCAAAGTTAAAAGCTAGATTTTTCCAGGCAACAGATCGAGGTGATCGTCCACTGATTGGATTTTGTCAAT</canonical_amplicon>
		<polymorphic_amplicon>GCTAGATCCTAACAAGTGAAAAAATCTTAGATTTTGAAATTCTGGAGATTTTGGGATGCTAGAGACCATATCTGCTATAATAAAAACCCACCCAACTTTGAGCTTATATATCTCGGTTACTGTAAGAGATATCAAAAATTAGTAAACTAATAAAATGTTGCTGATATCATGATAAACAATTTATTAGTTGACAATTTTTTGATACCTYTTACAGGAATTAAGATAAATTAGATTGAAGGGAGAGGTGCCCCCCCCCCCCCCTCTTTGCCCCTTACCCCTCGGGAGGTCCGACTACTTTGAGCTCAATTATCTCGGCTCCTATAAAAAATATCAAAAATTAGTAAACTATTAAAATGTTTGTGTTAATTTGATAAAGATTATATCAGTTGACAACTTTTTGATAGCTCTTACAGAAATTGAGATAAATAAACTTAAAGGGACAGCCCCCCCCCCCCTCTCGGGAGGTCCCATTACTTTGAGCTCAATTATCTCGGCTCCTCTAAAAGATATCAAAAATGTGCCAATGGATGAAATGTTTATCATAATATCACCAATAATTTATCAATTGACCGACTTTTTTATCTCAAACAAAAGATAAATTGGCTCAAAGTTAAAAGCTAGATTTTTCCAGGCAACAGATCGAGGTGATCGTCCACTGATTGGATTTTGTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23795</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>425202</contig_pos>
        <strand></strand>
        <context>tgatacctyt[T/C]acaggaatta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCTGATATCATGATAAACAATTTATTAGTTGACAATTTTTTGATACCTCT</left_flank>
        <right_flank>ACAGGAATTAAGATAAATTAGATTGAAGGGAGAGGTGCCCCCCCCCCCCC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAGGAACCTATAAATCGGACCCACCAACAATAGTAAAAGTGGAAGCAACAGATGATGATTCATCAGCGAATGGAGATATCGTATATTCATTGTATTACACACAATCGGAGAGTCGAAAAGCATTTGTGATAGATAGACATACGGGAGTGTTAACACCATCCCCGCATGTTGTATTCGATCGGGAGACACGACCACGAGAGGATGTTACCGTTAAGGTAGGGCTACAAACTACAAGAATTCTCCTTGAAGAATATTCTGGAAGGTCCAACCTTCTGCATTTTCAAGCAAGCTAGATCCTAACAAGTGAAAAAATCTTAGATTTTGAAATTCTGGAGATTTTGGGATGCTAGAGACCATATCTGCTATAATAAAAACCCACCCAACTTTGAGCTTATATATCTCGGTTACTGTAAGAGATATCAAAAATTAGTAAACTAATAAAATGTTGCTGATATCATGATAAACAATTTATTAGTTGACAATTTTTTGATACCTCTTACAGGAATTAAGATAAATTAGATTGAAGGGAGAGGTGCCCCCCCCCCCCCCTCTTTGCCCCTTACCCCTCGGGAGGTCCGACTACTTTGAGCTCAATTATCTCGGCTCCTATAAAAAATATCAAAAATTAGTAAACTATTAAAATGTTTGTGTTAATTTGATAAAGATTATATCAGTTGACAACTTTTTGATAGCTCTTACAGAAATTGAGATAAATAAACTTAAAGGGACAGCCCCCCCCCCCCTCTCGGGAGGTCCCATTACTTTGAGCTCAATTATCTCGGCTCCTCTAAAAGATATCAAAAATGTGCCAATGGATGAAATGTTTATCATAATATCACCAATAATTTATCAATTGACCGACTTTTTTATCTCAAACAAAAGATAAATTGGCTCAAAGTTAAAAGCTAGATTTTTCCAGGCAACAGATCGAGGTGATCGTCCACTGATTGGATTTTGTCAATTCTCGGTTGAAGTCGTCGACGTGAATGACAATGCTC</canonical>
            <polymorphic>GGAAGGAACCTATAAATCGGACCCACCAACAATAGTAAAAGTGGAAGCAACAGATGATGATTCATCAGCGAATGGAGATATCGTATATTCATTGTATTACACACAATCGGAGAGTCGAAAAGCATTTGTGATAGATAGACATACGGGAGTGTTAACACCATCCCCGCATGTTGTATTCGATCGGGAGACACGACCACGAGAGGATGTTACCGTTAAGGTAGGGCTACAAACTACAAGAATTCTCCTTGAAGAATATTCTGGAAGGTCCAACCTTCTGCATTTTCAAGCAAGCTAGATCCTAACAAGTGAAAAAATCTTAGATTTTGAAATTCTGGAGATTTTGGGATGCTAGAGACCATATCTGCTATAATAAAAACCCACCCAACTTTGAGCTTATATATCTCGGTTACTGTAAGAGATATCAAAAATTAGTAAACTAATAAAATGTTGCTGATATCATGATAAACAATTTATTAGTTGACAATTTTTTGATACCTCTYACAGGAATTAAGATAAATTAGATTGAAGGGAGAGGTGCCCCCCCCCCCCCCTCTTTGCCCCTTACCCCTCGGGAGGTCCGACTACTTTGAGCTCAATTATCTCGGCTCCTATAAAAAATATCAAAAATTAGTAAACTATTAAAATGTTTGTGTTAATTTGATAAAGATTATATCAGTTGACAACTTTTTGATAGCTCTTACAGAAATTGAGATAAATAAACTTAAAGGGACAGCCCCCCCCCCCCTCTCGGGAGGTCCCATTACTTTGAGCTCAATTATCTCGGCTCCTCTAAAAGATATCAAAAATGTGCCAATGGATGAAATGTTTATCATAATATCACCAATAATTTATCAATTGACCGACTTTTTTATCTCAAACAAAAGATAAATTGGCTCAAAGTTAAAAGCTAGATTTTTCCAGGCAACAGATCGAGGTGATCGTCCACTGATTGGATTTTGTCAATTCTCGGTTGAAGTCGTCGACGTGAATGACAATGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAGATCCTAACAAGTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGACAAAATCCAATCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>674</pcr_amplicon_size>
		<canonical_amplicon>GCTAGATCCTAACAAGTGAAAAAATCTTAGATTTTGAAATTCTGGAGATTTTGGGATGCTAGAGACCATATCTGCTATAATAAAAACCCACCCAACTTTGAGCTTATATATCTCGGTTACTGTAAGAGATATCAAAAATTAGTAAACTAATAAAATGTTGCTGATATCATGATAAACAATTTATTAGTTGACAATTTTTTGATACCTCTTACAGGAATTAAGATAAATTAGATTGAAGGGAGAGGTGCCCCCCCCCCCCCCTCTTTGCCCCTTACCCCTCGGGAGGTCCGACTACTTTGAGCTCAATTATCTCGGCTCCTATAAAAAATATCAAAAATTAGTAAACTATTAAAATGTTTGTGTTAATTTGATAAAGATTATATCAGTTGACAACTTTTTGATAGCTCTTACAGAAATTGAGATAAATAAACTTAAAGGGACAGCCCCCCCCCCCCTCTCGGGAGGTCCCATTACTTTGAGCTCAATTATCTCGGCTCCTCTAAAAGATATCAAAAATGTGCCAATGGATGAAATGTTTATCATAATATCACCAATAATTTATCAATTGACCGACTTTTTTATCTCAAACAAAAGATAAATTGGCTCAAAGTTAAAAGCTAGATTTTTCCAGGCAACAGATCGAGGTGATCGTCCACTGATTGGATTTTGTCAAT</canonical_amplicon>
		<polymorphic_amplicon>GCTAGATCCTAACAAGTGAAAAAATCTTAGATTTTGAAATTCTGGAGATTTTGGGATGCTAGAGACCATATCTGCTATAATAAAAACCCACCCAACTTTGAGCTTATATATCTCGGTTACTGTAAGAGATATCAAAAATTAGTAAACTAATAAAATGTTGCTGATATCATGATAAACAATTTATTAGTTGACAATTTTTTGATACCTCTYACAGGAATTAAGATAAATTAGATTGAAGGGAGAGGTGCCCCCCCCCCCCCCTCTTTGCCCCTTACCCCTCGGGAGGTCCGACTACTTTGAGCTCAATTATCTCGGCTCCTATAAAAAATATCAAAAATTAGTAAACTATTAAAATGTTTGTGTTAATTTGATAAAGATTATATCAGTTGACAACTTTTTGATAGCTCTTACAGAAATTGAGATAAATAAACTTAAAGGGACAGCCCCCCCCCCCCTCTCGGGAGGTCCCATTACTTTGAGCTCAATTATCTCGGCTCCTCTAAAAGATATCAAAAATGTGCCAATGGATGAAATGTTTATCATAATATCACCAATAATTTATCAATTGACCGACTTTTTTATCTCAAACAAAAGATAAATTGGCTCAAAGTTAAAAGCTAGATTTTTCCAGGCAACAGATCGAGGTGATCGTCCACTGATTGGATTTTGTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23796</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>425228</contig_pos>
        <strand></strand>
        <context>aattagattg[A/G]agggagaggt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTGACAATTTTTTGATACCTCTTACAGGAATTAAGATAAATTAGATTG</left_flank>
        <right_flank>AGGGAGAGGTGCCCCCCCCCCCCCCTCTTTGCCCCTTACCCCTCGGGAGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACAATAGTAAAAGTGGAAGCAACAGATGATGATTCATCAGCGAATGGAGATATCGTATATTCATTGTATTACACACAATCGGAGAGTCGAAAAGCATTTGTGATAGATAGACATACGGGAGTGTTAACACCATCCCCGCATGTTGTATTCGATCGGGAGACACGACCACGAGAGGATGTTACCGTTAAGGTAGGGCTACAAACTACAAGAATTCTCCTTGAAGAATATTCTGGAAGGTCCAACCTTCTGCATTTTCAAGCAAGCTAGATCCTAACAAGTGAAAAAATCTTAGATTTTGAAATTCTGGAGATTTTGGGATGCTAGAGACCATATCTGCTATAATAAAAACCCACCCAACTTTGAGCTTATATATCTCGGTTACTGTAAGAGATATCAAAAATTAGTAAACTAATAAAATGTTGCTGATATCATGATAAACAATTTATTAGTTGACAATTTTTTGATACCTCTTACAGGAATTAAGATAAATTAGATTGAAGGGAGAGGTGCCCCCCCCCCCCCCTCTTTGCCCCTTACCCCTCGGGAGGTCCGACTACTTTGAGCTCAATTATCTCGGCTCCTATAAAAAATATCAAAAATTAGTAAACTATTAAAATGTTTGTGTTAATTTGATAAAGATTATATCAGTTGACAACTTTTTGATAGCTCTTACAGAAATTGAGATAAATAAACTTAAAGGGACAGCCCCCCCCCCCCTCTCGGGAGGTCCCATTACTTTGAGCTCAATTATCTCGGCTCCTCTAAAAGATATCAAAAATGTGCCAATGGATGAAATGTTTATCATAATATCACCAATAATTTATCAATTGACCGACTTTTTTATCTCAAACAAAAGATAAATTGGCTCAAAGTTAAAAGCTAGATTTTTCCAGGCAACAGATCGAGGTGATCGTCCACTGATTGGATTTTGTCAATTCTCGGTTGAAGTCGTCGACGTGAATGACAATGCTCCACAATTCGAACGTCCATCCTATGAG</canonical>
            <polymorphic>CAACAATAGTAAAAGTGGAAGCAACAGATGATGATTCATCAGCGAATGGAGATATCGTATATTCATTGTATTACACACAATCGGAGAGTCGAAAAGCATTTGTGATAGATAGACATACGGGAGTGTTAACACCATCCCCGCATGTTGTATTCGATCGGGAGACACGACCACGAGAGGATGTTACCGTTAAGGTAGGGCTACAAACTACAAGAATTCTCCTTGAAGAATATTCTGGAAGGTCCAACCTTCTGCATTTTCAAGCAAGCTAGATCCTAACAAGTGAAAAAATCTTAGATTTTGAAATTCTGGAGATTTTGGGATGCTAGAGACCATATCTGCTATAATAAAAACCCACCCAACTTTGAGCTTATATATCTCGGTTACTGTAAGAGATATCAAAAATTAGTAAACTAATAAAATGTTGCTGATATCATGATAAACAATTTATTAGTTGACAATTTTTTGATACCTCTTACAGGAATTAAGATAAATTAGATTGRAGGGAGAGGTGCCCCCCCCCCCCCCTCTTTGCCCCTTACCCCTCGGGAGGTCCGACTACTTTGAGCTCAATTATCTCGGCTCCTATAAAAAATATCAAAAATTAGTAAACTATTAAAATGTTTGTGTTAATTTGATAAAGATTATATCAGTTGACAACTTTTTGATAGCTCTTACAGAAATTGAGATAAATAAACTTAAAGGGACAGCCCCCCCCCCCCTCTCGGGAGGTCCCATTACTTTGAGCTCAATTATCTCGGCTCCTCTAAAAGATATCAAAAATGTGCCAATGGATGAAATGTTTATCATAATATCACCAATAATTTATCAATTGACCGACTTTTTTATCTCAAACAAAAGATAAATTGGCTCAAAGTTAAAAGCTAGATTTTTCCAGGCAACAGATCGAGGTGATCGTCCACTGATTGGATTTTGTCAATTCTCGGTTGAAGTCGTCGACGTGAATGACAATGCTCCACAATTCGAACGTCCATCCTATGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAGATCCTAACAAGTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGACAAAATCCAATCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>674</pcr_amplicon_size>
		<canonical_amplicon>GCTAGATCCTAACAAGTGAAAAAATCTTAGATTTTGAAATTCTGGAGATTTTGGGATGCTAGAGACCATATCTGCTATAATAAAAACCCACCCAACTTTGAGCTTATATATCTCGGTTACTGTAAGAGATATCAAAAATTAGTAAACTAATAAAATGTTGCTGATATCATGATAAACAATTTATTAGTTGACAATTTTTTGATACCTCTTACAGGAATTAAGATAAATTAGATTGAAGGGAGAGGTGCCCCCCCCCCCCCCTCTTTGCCCCTTACCCCTCGGGAGGTCCGACTACTTTGAGCTCAATTATCTCGGCTCCTATAAAAAATATCAAAAATTAGTAAACTATTAAAATGTTTGTGTTAATTTGATAAAGATTATATCAGTTGACAACTTTTTGATAGCTCTTACAGAAATTGAGATAAATAAACTTAAAGGGACAGCCCCCCCCCCCCTCTCGGGAGGTCCCATTACTTTGAGCTCAATTATCTCGGCTCCTCTAAAAGATATCAAAAATGTGCCAATGGATGAAATGTTTATCATAATATCACCAATAATTTATCAATTGACCGACTTTTTTATCTCAAACAAAAGATAAATTGGCTCAAAGTTAAAAGCTAGATTTTTCCAGGCAACAGATCGAGGTGATCGTCCACTGATTGGATTTTGTCAAT</canonical_amplicon>
		<polymorphic_amplicon>GCTAGATCCTAACAAGTGAAAAAATCTTAGATTTTGAAATTCTGGAGATTTTGGGATGCTAGAGACCATATCTGCTATAATAAAAACCCACCCAACTTTGAGCTTATATATCTCGGTTACTGTAAGAGATATCAAAAATTAGTAAACTAATAAAATGTTGCTGATATCATGATAAACAATTTATTAGTTGACAATTTTTTGATACCTCTTACAGGAATTAAGATAAATTAGATTGRAGGGAGAGGTGCCCCCCCCCCCCCCTCTTTGCCCCTTACCCCTCGGGAGGTCCGACTACTTTGAGCTCAATTATCTCGGCTCCTATAAAAAATATCAAAAATTAGTAAACTATTAAAATGTTTGTGTTAATTTGATAAAGATTATATCAGTTGACAACTTTTTGATAGCTCTTACAGAAATTGAGATAAATAAACTTAAAGGGACAGCCCCCCCCCCCCTCTCGGGAGGTCCCATTACTTTGAGCTCAATTATCTCGGCTCCTCTAAAAGATATCAAAAATGTGCCAATGGATGAAATGTTTATCATAATATCACCAATAATTTATCAATTGACCGACTTTTTTATCTCAAACAAAAGATAAATTGGCTCAAAGTTAAAAGCTAGATTTTTCCAGGCAACAGATCGAGGTGATCGTCCACTGATTGGATTTTGTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23797</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>425368</contig_pos>
        <strand></strand>
        <context>atttgataaa[G/C]attatatcag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AAATATCAAAAATTAGTAAACTATTAAAATGTTTGTGTTAATTTGATAAA</left_flank>
        <right_flank>ATTATATCAGTTGACAACTTTTTGATAGCTCTTACAGAAATTGAGATAAA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGTTGTATTCGATCGGGAGACACGACCACGAGAGGATGTTACCGTTAAGGTAGGGCTACAAACTACAAGAATTCTCCTTGAAGAATATTCTGGAAGGTCCAACCTTCTGCATTTTCAAGCAAGCTAGATCCTAACAAGTGAAAAAATCTTAGATTTTGAAATTCTGGAGATTTTGGGATGCTAGAGACCATATCTGCTATAATAAAAACCCACCCAACTTTGAGCTTATATATCTCGGTTACTGTAAGAGATATCAAAAATTAGTAAACTAATAAAATGTTGCTGATATCATGATAAACAATTTATTAGTTGACAATTTTTTGATACCTCTTACAGGAATTAAGATAAATTAGATTGAAGGGAGAGGTGCCCCCCCCCCCCCCTCTTTGCCCCTTACCCCTCGGGAGGTCCGACTACTTTGAGCTCAATTATCTCGGCTCCTATAAAAAATATCAAAAATTAGTAAACTATTAAAATGTTTGTGTTAATTTGATAAAGATTATATCAGTTGACAACTTTTTGATAGCTCTTACAGAAATTGAGATAAATAAACTTAAAGGGACAGCCCCCCCCCCCCTCTCGGGAGGTCCCATTACTTTGAGCTCAATTATCTCGGCTCCTCTAAAAGATATCAAAAATGTGCCAATGGATGAAATGTTTATCATAATATCACCAATAATTTATCAATTGACCGACTTTTTTATCTCAAACAAAAGATAAATTGGCTCAAAGTTAAAAGCTAGATTTTTCCAGGCAACAGATCGAGGTGATCGTCCACTGATTGGATTTTGTCAATTCTCGGTTGAAGTCGTCGACGTGAATGACAATGCTCCACAATTCGAACGTCCATCCTATGAGACTTCTGTCTCTAGATTCGAAGCGATTGGAACATCTGTGATTACTGTGTTTGCGTTCGATAACGATGCAGCACACAATGCAGAGATTTCCTATAAACTGGAAGTGGACACGACAGCAGGTGAGCAATAGTGAACTACAAA</canonical>
            <polymorphic>CATGTTGTATTCGATCGGGAGACACGACCACGAGAGGATGTTACCGTTAAGGTAGGGCTACAAACTACAAGAATTCTCCTTGAAGAATATTCTGGAAGGTCCAACCTTCTGCATTTTCAAGCAAGCTAGATCCTAACAAGTGAAAAAATCTTAGATTTTGAAATTCTGGAGATTTTGGGATGCTAGAGACCATATCTGCTATAATAAAAACCCACCCAACTTTGAGCTTATATATCTCGGTTACTGTAAGAGATATCAAAAATTAGTAAACTAATAAAATGTTGCTGATATCATGATAAACAATTTATTAGTTGACAATTTTTTGATACCTCTTACAGGAATTAAGATAAATTAGATTGAAGGGAGAGGTGCCCCCCCCCCCCCCTCTTTGCCCCTTACCCCTCGGGAGGTCCGACTACTTTGAGCTCAATTATCTCGGCTCCTATAAAAAATATCAAAAATTAGTAAACTATTAAAATGTTTGTGTTAATTTGATAAASATTATATCAGTTGACAACTTTTTGATAGCTCTTACAGAAATTGAGATAAATAAACTTAAAGGGACAGCCCCCCCCCCCCTCTCGGGAGGTCCCATTACTTTGAGCTCAATTATCTCGGCTCCTCTAAAAGATATCAAAAATGTGCCAATGGATGAAATGTTTATCATAATATCACCAATAATTTATCAATTGACCGACTTTTTTATCTCAAACAAAAGATAAATTGGCTCAAAGTTAAAAGCTAGATTTTTCCAGGCAACAGATCGAGGTGATCGTCCACTGATTGGATTTTGTCAATTCTCGGTTGAAGTCGTCGACGTGAATGACAATGCTCCACAATTCGAACGTCCATCCTATGAGACTTCTGTCTCTAGATTCGAAGCGATTGGAACATCTGTGATTACTGTGTTTGCGTTCGATAACGATGCAGCACACAATGCAGAGATTTCCTATAAACTGGAAGTGGACACGACAGCAGGTGAGCAATAGTGAACTACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAGATCCTAACAAGTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGACAAAATCCAATCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>674</pcr_amplicon_size>
		<canonical_amplicon>GCTAGATCCTAACAAGTGAAAAAATCTTAGATTTTGAAATTCTGGAGATTTTGGGATGCTAGAGACCATATCTGCTATAATAAAAACCCACCCAACTTTGAGCTTATATATCTCGGTTACTGTAAGAGATATCAAAAATTAGTAAACTAATAAAATGTTGCTGATATCATGATAAACAATTTATTAGTTGACAATTTTTTGATACCTCTTACAGGAATTAAGATAAATTAGATTGAAGGGAGAGGTGCCCCCCCCCCCCCCTCTTTGCCCCTTACCCCTCGGGAGGTCCGACTACTTTGAGCTCAATTATCTCGGCTCCTATAAAAAATATCAAAAATTAGTAAACTATTAAAATGTTTGTGTTAATTTGATAAAGATTATATCAGTTGACAACTTTTTGATAGCTCTTACAGAAATTGAGATAAATAAACTTAAAGGGACAGCCCCCCCCCCCCTCTCGGGAGGTCCCATTACTTTGAGCTCAATTATCTCGGCTCCTCTAAAAGATATCAAAAATGTGCCAATGGATGAAATGTTTATCATAATATCACCAATAATTTATCAATTGACCGACTTTTTTATCTCAAACAAAAGATAAATTGGCTCAAAGTTAAAAGCTAGATTTTTCCAGGCAACAGATCGAGGTGATCGTCCACTGATTGGATTTTGTCAAT</canonical_amplicon>
		<polymorphic_amplicon>GCTAGATCCTAACAAGTGAAAAAATCTTAGATTTTGAAATTCTGGAGATTTTGGGATGCTAGAGACCATATCTGCTATAATAAAAACCCACCCAACTTTGAGCTTATATATCTCGGTTACTGTAAGAGATATCAAAAATTAGTAAACTAATAAAATGTTGCTGATATCATGATAAACAATTTATTAGTTGACAATTTTTTGATACCTCTTACAGGAATTAAGATAAATTAGATTGAAGGGAGAGGTGCCCCCCCCCCCCCCTCTTTGCCCCTTACCCCTCGGGAGGTCCGACTACTTTGAGCTCAATTATCTCGGCTCCTATAAAAAATATCAAAAATTAGTAAACTATTAAAATGTTTGTGTTAATTTGATAAASATTATATCAGTTGACAACTTTTTGATAGCTCTTACAGAAATTGAGATAAATAAACTTAAAGGGACAGCCCCCCCCCCCCTCTCGGGAGGTCCCATTACTTTGAGCTCAATTATCTCGGCTCCTCTAAAAGATATCAAAAATGTGCCAATGGATGAAATGTTTATCATAATATCACCAATAATTTATCAATTGACCGACTTTTTTATCTCAAACAAAAGATAAATTGGCTCAAAGTTAAAAGCTAGATTTTTCCAGGCAACAGATCGAGGTGATCGTCCACTGATTGGATTTTGTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23798</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>425380</contig_pos>
        <strand></strand>
        <context>ttatatcagt[T/A]gacaactttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTAGTAAACTATTAAAATGTTTGTGTTAATTTGATAAAGATTATATCAGT</left_flank>
        <right_flank>GACAACTTTTTGATAGCTCTTACAGAAATTGAGATAAATAAACTTAAAGG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATCGGGAGACACGACCACGAGAGGATGTTACCGTTAAGGTAGGGCTACAAACTACAAGAATTCTCCTTGAAGAATATTCTGGAAGGTCCAACCTTCTGCATTTTCAAGCAAGCTAGATCCTAACAAGTGAAAAAATCTTAGATTTTGAAATTCTGGAGATTTTGGGATGCTAGAGACCATATCTGCTATAATAAAAACCCACCCAACTTTGAGCTTATATATCTCGGTTACTGTAAGAGATATCAAAAATTAGTAAACTAATAAAATGTTGCTGATATCATGATAAACAATTTATTAGTTGACAATTTTTTGATACCTCTTACAGGAATTAAGATAAATTAGATTGAAGGGAGAGGTGCCCCCCCCCCCCCCTCTTTGCCCCTTACCCCTCGGGAGGTCCGACTACTTTGAGCTCAATTATCTCGGCTCCTATAAAAAATATCAAAAATTAGTAAACTATTAAAATGTTTGTGTTAATTTGATAAAGATTATATCAGTTGACAACTTTTTGATAGCTCTTACAGAAATTGAGATAAATAAACTTAAAGGGACAGCCCCCCCCCCCCTCTCGGGAGGTCCCATTACTTTGAGCTCAATTATCTCGGCTCCTCTAAAAGATATCAAAAATGTGCCAATGGATGAAATGTTTATCATAATATCACCAATAATTTATCAATTGACCGACTTTTTTATCTCAAACAAAAGATAAATTGGCTCAAAGTTAAAAGCTAGATTTTTCCAGGCAACAGATCGAGGTGATCGTCCACTGATTGGATTTTGTCAATTCTCGGTTGAAGTCGTCGACGTGAATGACAATGCTCCACAATTCGAACGTCCATCCTATGAGACTTCTGTCTCTAGATTCGAAGCGATTGGAACATCTGTGATTACTGTGTTTGCGTTCGATAACGATGCAGCACACAATGCAGAGATTTCCTATAAACTGGAAGTGGACACGACAGCAGGTGAGCAATAGTGAACTACAAACTACAAAGCATT</canonical>
            <polymorphic>GATCGGGAGACACGACCACGAGAGGATGTTACCGTTAAGGTAGGGCTACAAACTACAAGAATTCTCCTTGAAGAATATTCTGGAAGGTCCAACCTTCTGCATTTTCAAGCAAGCTAGATCCTAACAAGTGAAAAAATCTTAGATTTTGAAATTCTGGAGATTTTGGGATGCTAGAGACCATATCTGCTATAATAAAAACCCACCCAACTTTGAGCTTATATATCTCGGTTACTGTAAGAGATATCAAAAATTAGTAAACTAATAAAATGTTGCTGATATCATGATAAACAATTTATTAGTTGACAATTTTTTGATACCTCTTACAGGAATTAAGATAAATTAGATTGAAGGGAGAGGTGCCCCCCCCCCCCCCTCTTTGCCCCTTACCCCTCGGGAGGTCCGACTACTTTGAGCTCAATTATCTCGGCTCCTATAAAAAATATCAAAAATTAGTAAACTATTAAAATGTTTGTGTTAATTTGATAAAGATTATATCAGTWGACAACTTTTTGATAGCTCTTACAGAAATTGAGATAAATAAACTTAAAGGGACAGCCCCCCCCCCCCTCTCGGGAGGTCCCATTACTTTGAGCTCAATTATCTCGGCTCCTCTAAAAGATATCAAAAATGTGCCAATGGATGAAATGTTTATCATAATATCACCAATAATTTATCAATTGACCGACTTTTTTATCTCAAACAAAAGATAAATTGGCTCAAAGTTAAAAGCTAGATTTTTCCAGGCAACAGATCGAGGTGATCGTCCACTGATTGGATTTTGTCAATTCTCGGTTGAAGTCGTCGACGTGAATGACAATGCTCCACAATTCGAACGTCCATCCTATGAGACTTCTGTCTCTAGATTCGAAGCGATTGGAACATCTGTGATTACTGTGTTTGCGTTCGATAACGATGCAGCACACAATGCAGAGATTTCCTATAAACTGGAAGTGGACACGACAGCAGGTGAGCAATAGTGAACTACAAACTACAAAGCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>303 301 199 197</canonical_bands>
                <polymorphic_bands>502 301 197</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTAGATCCTAACAAGTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGACAAAATCCAATCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>674</pcr_amplicon_size>
		<canonical_amplicon>GCTAGATCCTAACAAGTGAAAAAATCTTAGATTTTGAAATTCTGGAGATTTTGGGATGCTAGAGACCATATCTGCTATAATAAAAACCCACCCAACTTTGAGCTTATATATCTCGGTTACTGTAAGAGATATCAAAAATTAGTAAACTAATAAAATGTTGCTGATATCATGATAAACAATTTATTAGTTGACAATTTTTTGATACCTCTTACAGGAATTAAGATAAATTAGATTGAAGGGAGAGGTGCCCCCCCCCCCCCCTCTTTGCCCCTTACCCCTCGGGAGGTCCGACTACTTTGAGCTCAATTATCTCGGCTCCTATAAAAAATATCAAAAATTAGTAAACTATTAAAATGTTTGTGTTAATTTGATAAAGATTATATCAGTTGACAACTTTTTGATAGCTCTTACAGAAATTGAGATAAATAAACTTAAAGGGACAGCCCCCCCCCCCCTCTCGGGAGGTCCCATTACTTTGAGCTCAATTATCTCGGCTCCTCTAAAAGATATCAAAAATGTGCCAATGGATGAAATGTTTATCATAATATCACCAATAATTTATCAATTGACCGACTTTTTTATCTCAAACAAAAGATAAATTGGCTCAAAGTTAAAAGCTAGATTTTTCCAGGCAACAGATCGAGGTGATCGTCCACTGATTGGATTTTGTCAAT</canonical_amplicon>
		<polymorphic_amplicon>GCTAGATCCTAACAAGTGAAAAAATCTTAGATTTTGAAATTCTGGAGATTTTGGGATGCTAGAGACCATATCTGCTATAATAAAAACCCACCCAACTTTGAGCTTATATATCTCGGTTACTGTAAGAGATATCAAAAATTAGTAAACTAATAAAATGTTGCTGATATCATGATAAACAATTTATTAGTTGACAATTTTTTGATACCTCTTACAGGAATTAAGATAAATTAGATTGAAGGGAGAGGTGCCCCCCCCCCCCCCTCTTTGCCCCTTACCCCTCGGGAGGTCCGACTACTTTGAGCTCAATTATCTCGGCTCCTATAAAAAATATCAAAAATTAGTAAACTATTAAAATGTTTGTGTTAATTTGATAAAGATTATATCAGTWGACAACTTTTTGATAGCTCTTACAGAAATTGAGATAAATAAACTTAAAGGGACAGCCCCCCCCCCCCTCTCGGGAGGTCCCATTACTTTGAGCTCAATTATCTCGGCTCCTCTAAAAGATATCAAAAATGTGCCAATGGATGAAATGTTTATCATAATATCACCAATAATTTATCAATTGACCGACTTTTTTATCTCAAACAAAAGATAAATTGGCTCAAAGTTAAAAGCTAGATTTTTCCAGGCAACAGATCGAGGTGATCGTCCACTGATTGGATTTTGTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23799</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>429438</contig_pos>
        <strand>+</strand>
        <context>ttttgtaggc[C/T]CCTAACAGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTCTGCAATTTTCAGACAAATTGAAACATTTTGAATGTCTTTTGTAGGC</left_flank>
        <right_flank>CCTAACAGATGGTGTATCTGGGCGCGCTCATTTTAAGTTTGTCGGTCTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCGCACGACTTGGATAAGCGTAAGTGCGCTCTATTGAGAATTCTTGATGTGTTTTTTAAAATTTTTAATTGGAAATAGCTCAAAATTGCTCAGTTACCCAATGTAAATCTGTTGGTTTTGAAGAAATTTATTAATTTTGAACAACAATTTTTGATTGGCTACAATAGTAGGTCAAAATTTGTCTGAAAATTTCAGAATATACTAAAAAAGACATGTGCTTCAATTTTGTAGTTGACAACTTTTTTGAAAAATTAGGTCCTGAGGAGATATGCTACTTGGAAGCGTCCTTCTCACTTCTATGACGCCACCCCTTTGACAAGTGGGCGGCGCCCACTGGATGGCCGCGCTACCGGAAGGAGGACAACTTCTACGTGGCATATCTCCTTGGGACCTAAGTTTTCGAAAAAGTGGTCAACTAAAATAATGAAGCTCTACATTTGTTTAGTGTACTCTGCAATTTTCAGACAAATTGAAACATTTTGAATGTCTTTTGTAGGCACCTAACAGATGGTGTATCTGGGCGCGCTCATTTTAAGTTTGTCGGTCTAGCAAATGCGCTCTATTGAACACACCAAACAATTATTTCAACAAAAAAATTCAGATTCCAACCTCCGCTACCATCTAATCGGCTCGGGAGGCGGTCGAATCCCATTCGGTGTTCGTACGGATTCTGGAACAATCTTTGTCAAGGAACCATTGGATTTTGAATCCGCAGATCAATATCATTTAATCCTGATTGCCTCTGACGGGAGACACAACGCAACAACAAATGTCTATATACATATAGAAGACGTCAATGATAATGCACCACAATTCGAACAACAAAAATATGCAACTACAGTAATCGAGGAGGATGTGGATGTCCCCAAAGTGTTGTTCAATGTCCGGGCGACAGATGCGGATCAGGATGAGAAGAGCAGTCGAATTGTGTATCGATTGGAGGGTCAGGGAGCGGAGGAAGTGTTCAGAATTGGGAAGTATTCTGGAATGATTGAGCTG</canonical>
            <polymorphic>GGCGCACGACTTGGATAAGCGTAAGTGCGCTCTATTGAGAATTCTTGATGTGTTTTTTAAAATTTTTAATTGGAAATAGCTCAAAATTGCTCAGTTACCCAATGTAAATCTGTTGGTTTTGAAGAAATTTATTAATTTTGAACAACAATTTTTGATTGGCTACAATAGTAGGTCAAAATTTGTCTGAAAATTTCAGAATATACTAAAAAAGACATGTGCTTCAATTTTGTAGTTGACAACTTTTTTGAAAAATTAGGTCCTGAGGAGATATGCTACTTGGAAGCGTCCTTCTCACTTCTATGACGCCACCCCTTTGACAAGTGGGCGGCGCCCACTGGATGGCCGCGCTACCGGAAGGAGGACAACTTCTACGTGGCATATCTCCTTGGGACCTAAGTTTTCGAAAAAGTGGTCAACTAAAATAATGAAGCTCTACATTTGTTTAGTGTACTCTGCAATTTTCAGACAAATTGAAACATTTTGAATGTCTTTTGTAGGCYCCTAACAGATGGTGTATCTGGGCGCGCTCATTTTAAGTTTGTCGGTCTAGCAAATGCGCTCTATTGAACACACCAAACAATTATTTCAACAAAAAAATTCAGATTCCAACCTCCGCTACCATCTAATCGGCTCGGGAGGCGGTCGAATCCCATTCGGTGTTCGTACGGATTCTGGAACAATCTTTGTCAAGGAACCATTGGATTTTGAATCCGCAGATCAATATCATTTAATCCTGATTGCCTCTGACGGGAGACACAACGCAACAACAAATGTCTATATACATATAGAAGACGTCAATGATAATGCACCACAATTCGAACAACAAAAATATGCAACTACAGTAATCGAGGAGGATGTGGATGTCCCCAAAGTGTTGTTCAATGTCCGGGCGACAGATGCGGATCAGGATGAGAAGAGCAGTCGAATTGTGTATCGATTGGAGGGTCAGGGAGCGGAGGAAGTGTTCAGAATTGGGAAGTATTCTGGAATGATTGAGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>503 327 170</canonical_bands>
                <polymorphic_bands>673 327</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>166 97 87 76 57 56 52 52 48 41 37 36 36 33 25 21 15 15 14 14 11 6 3 2</canonical_bands>
                <polymorphic_bands>166 97 87 76 66 57 56 52 48 41 37 36 36 33 25 21 15 15 14 11 6 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATGTAAATCTGTTGGTTTTG</pcr_primer_p1>
		<pcr_primer_p2>GTGTTCAATAGAGCGCATTT</pcr_primer_p2>
		<pcr_amplicon_size>472</pcr_amplicon_size>
		<canonical_amplicon>CAATGTAAATCTGTTGGTTTTGAAGAAATTTATTAATTTTGAACAACAATTTTTGATTGGCTACAATAGTAGGTCAAAATTTGTCTGAAAATTTCAGAATATACTAAAAAAGACATGTGCTTCAATTTTGTAGTTGACAACTTTTTTGAAAAATTAGGTCCTGAGGAGATATGCTACTTGGAAGCGTCCTTCTCACTTCTATGACGCCACCCCTTTGACAAGTGGGCGGCGCCCACTGGATGGCCGCGCTACCGGAAGGAGGACAACTTCTACGTGGCATATCTCCTTGGGACCTAAGTTTTCGAAAAAGTGGTCAACTAAAATAATGAAGCTCTACATTTGTTTAGTGTACTCTGCAATTTTCAGACAAATTGAAACATTTTGAATGTCTTTTGTAGGCACCTAACAGATGGTGTATCTGGGCGCGCTCATTTTAAGTTTGTCGGTCTAGCAAATGCGCTCTATTGAACAC</canonical_amplicon>
		<polymorphic_amplicon>CAATGTAAATCTGTTGGTTTTGAAGAAATTTATTAATTTTGAACAACAATTTTTGATTGGCTACAATAGTAGGTCAAAATTTGTCTGAAAATTTCAGAATATACTAAAAAAGACATGTGCTTCAATTTTGTAGTTGACAACTTTTTTGAAAAATTAGGTCCTGAGGAGATATGCTACTTGGAAGCGTCCTTCTCACTTCTATGACGCCACCCCTTTGACAAGTGGGCGGCGCCCACTGGATGGCCGCGCTACCGGAAGGAGGACAACTTCTACGTGGCATATCTCCTTGGGACCTAAGTTTTCGAAAAAGTGGTCAACTAAAATAATGAAGCTCTACATTTGTTTAGTGTACTCTGCAATTTTCAGACAAATTGAAACATTTTGAATGTCTTTTGTAGGCYCCTAACAGATGGTGTATCTGGGCGCGCTCATTTTAAGTTTGTCGGTCTAGCAAATGCGCTCTATTGAACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23800</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>450341</contig_pos>
        <strand>+</strand>
        <context>MATTTTTTTT[C/G]GTCCTTCAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTAAAATTTGTCAAAAAAATTTGACCTACTTTTTCTGCACCATTTTTTTT</left_flank>
        <right_flank>GTCCTTCAGCTCAATGAATCTATTTTTTGACCTCCTGAATTTCGTAGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTCTCTGCGTCTCTCCTCCCTCTCTCCCCCATATACAGTCCGCCACACTATCGGTCATCTCGGGTCCCCCCATCCGCGCACACTCCTATTTCTTACCTTTGTTAGTGGGCGTGGCTTATAGCCTGCTGGACACTCTCTCGTTTGTCTGCGTCTCTTCAAATTCCACACTCTTTCGCTCTTGACCGAGCGCGCGCGCATCCCTCCCTACTCTGTTAGTTCTGTATCTCTTCTTCTTCTATTTCTCTTTTTCTTCTTTTTGGTGGAGGAGAAGAAGAAGAAGAAGACATACACGTTTATACTCTATCTCCCTCCTTAGAGTCTCTCTCTCTCTCTCTCTGCTACTTTTCATTCATCCCAACAAATCTCTTCTCTTTTTTTTTATATAAAACTCTTTTGCTACTTTTTAGCCATTTTTAAAAATACATTCTTGATCTACCTAAAAACCTTTAAAATTTGTCAAAAAAATTTGACCTACTTTTTCTGCACCATTTTTTTTTGTCCTTCAGCTCAATGAATCTATTTTTTGACCTCCTGAATTTCGTAGAATAAGAAATTTGACCTACTTTTTAGACGATTTTCTCATACATTTAGAATCTCATATATTCAAAACTAATGAAAATTTCATGAATTTTGAGCTAGAAATCGTTAAAAACGGTTCCAAACTAGCCGAGTTGGAGCGTTTTGAAATTTTTACTGAGGCTTATAAGTTTTTGTAGTTTGTAGCTTTTTAGCCTCAGTAAAAACTTCAAACTGCGATAACTCGGTTATTTTTGAACCGTTTTCGATCGTCTTTGAATGAAAATTCACATGTTCCGCTTTTTTAATTGAAACTACAAACTACAAGAGTTAGCCTCAGTAAAACTTATTTTTCCGCCGTTTTGAACGCATTTTGACTCAAAATTCGTGATTTTTTTTTCGTTTTTTGAGCTCAAAATTGTGTAGTTTGCAGGCCTATTTAATTTTTTTAGCTCTAAAAAATTTTCCTGCCGAAAAAAAC</canonical>
            <polymorphic>ATTTTCTCTGCGTCTCTCCTCCCTCTCTCCCCCATATACAGTCCGCCACACTATCGGTCATCTCGGGTCCCCCCATCCGCGCACACTCCTATTTCTTACCTTTGTTAGTGGGCGTGGCTTATAGCCTGCTGGACACTCTCTCGTTTGTCTGCGTCTCTTCAAATTCCACACTCTTTCGCTCTTGACCGAGCGCGCGCGCATCCCTCCCTACTCTGTTAGTTCTGTATCTCTTCTTCTTCTATTTCTCTTTTTCTTCTTTTTGGTGGAGGAGAAGAAGAAGAAGAAGACATACACGTTTATACTCTATCTCCCTCCTTAGAGTCTCTCTCTCTCTCTCTCTGCTACTTTTCATTCATCCCAACAAATCTCTTCTCTTTTTTTTTATATAAAACTCTTTTGCTACTTTTTAGCCATTTTTAAAAATACATTCTTGATCTACCTAAAAACCTTTAAAATTTGTCAAAAAAATTTGACCTACTTTTTCTGCACCATTTTTTTTSGTCCTTCAGCTCAATGAATCTATTTTTTGACCTCCTGAATTTCGTAGAATAAGAAATTTGACCTACTTTTTAGACGATTTTCTCATACATTTAGAATCTCATATATTCAAAACTAATGAAAATTTCATGAATTTTGAGCTAGAAATCGTTAAAAACGGTTCCAAACTAGCCGAGTTGGAGCGTTTTGAAATTTTTACTGAGGCTTATAAGTTTTTGTAGTTTGTAGCTTTTTAGCCTCAGTAAAAACTTCAAACTGCGATAACTCGGTTATTTTTGAACCGTTTTCGATCGTCTTTGAATGAAAATTCACATGTTCCGCTTTTTTAATTGAAACTACAAACTACAAGAGTTAGCCTCAGTAAAACTTATTTTTCCGCCGTTTTGAACGCATTTTGACTCAAAATTCGTGATTTTTTTTTCGTTTTTTGAGCTCAAAATTGTGTAGTTTGCAGGCCTATTTAATTTTTTTAGCTCTAAAAAATTTTCCTGCCGAAAAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTCTCTGCTACTTTTCATTCA</pcr_primer_p1>
		<pcr_primer_p2>AAAATCGTCTAAAAAGTAGGTCAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCTCTCTGCTACTTTTCATTCATCCCAACAAATCTCTTCTCTTTTTTTTTATATAAAACTCTTTTGCTACTTTTTAGCCATTTTTAAAAATACATTCTTGATCTACCTAAAAACCTTTAAAATTTGTCAAAAAAATTTGACCTACTTTTTCTGCACCATTTTTTTTTGTCCTTCAGCTCAATGAATCTATTTTTTGACCTCCTGAATTTCGTAGAATAAGAAATTTGACCTACTTTTTAGACGATTTT</canonical_amplicon>
		<polymorphic_amplicon>CTCTCTCTGCTACTTTTCATTCATCCCAACAAATCTCTTCTCTTTTTTTTTATATAAAACTCTTTTGCTACTTTTTAGCCATTTTTAAAAATACATTCTTGATCTACCTAAAAACCTTTAAAATTTGTCAAAAAAATTTGACCTACTTTTTCTGCACCATTTTTTTTSGTCCTTCAGCTCAATGAATCTATTTTTTGACCTCCTGAATTTCGTAGAATAAGAAATTTGACCTACTTTTTAGACGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23801</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>450571</contig_pos>
        <strand></strand>
        <context>tttgtagctt[T/C]ttagcctcag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCGTTTTGAAATTTTTACTGAGGCTTATAAGTTTTTGTAGTTTGTAGCTT</left_flank>
        <right_flank>TTAGCCTCAGTAAAAACTTCAAACTGCGATAACTCGGTTATTTTTGAACC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTCTTCTATTTCTCTTTTTCTTCTTTTTGGTGGAGGAGAAGAAGAAGAAGAAGACATACACGTTTATACTCTATCTCCCTCCTTAGAGTCTCTCTCTCTCTCTCTCTGCTACTTTTCATTCATCCCAACAAATCTCTTCTCTTTTTTTTTATATAAAACTCTTTTGCTACTTTTTAGCCATTTTTAAAAATACATTCTTGATCTACCTAAAAACCTTTAAAATTTGTCAAAAAAATTTGACCTACTTTTTCTGCACCATTTTTTTTTGTCCTTCAGCTCAATGAATCTATTTTTTGACCTCCTGAATTTCGTAGAATAAGAAATTTGACCTACTTTTTAGACGATTTTCTCATACATTTAGAATCTCATATATTCAAAACTAATGAAAATTTCATGAATTTTGAGCTAGAAATCGTTAAAAACGGTTCCAAACTAGCCGAGTTGGAGCGTTTTGAAATTTTTACTGAGGCTTATAAGTTTTTGTAGTTTGTAGCTTTTTAGCCTCAGTAAAAACTTCAAACTGCGATAACTCGGTTATTTTTGAACCGTTTTCGATCGTCTTTGAATGAAAATTCACATGTTCCGCTTTTTTAATTGAAACTACAAACTACAAGAGTTAGCCTCAGTAAAACTTATTTTTCCGCCGTTTTGAACGCATTTTGACTCAAAATTCGTGATTTTTTTTTCGTTTTTTGAGCTCAAAATTGTGTAGTTTGCAGGCCTATTTAATTTTTTTAGCTCTAAAAAATTTTCCTGCCGAAAAAAACGAAAAATTGCACTTTTTGAGTAATCTGGCGCCTTCGAAACCCCGTGCTAAAATCCCGTTAAACTCTCACTTTTTCGGGTTTTATGCAAAATTTCGCTATTCTCACATCAATTTTTTTGACACTGTTTGACCCATTTTCAAGTCAAAATTTCTCTGTTTTTTACTAGATTTTGGTTGTCTTCTGCAATTTTTCAGTCATTTAGGTGATTTCGATAGTTTCAAGCTTATTTT</canonical>
            <polymorphic>TTCTTCTTCTATTTCTCTTTTTCTTCTTTTTGGTGGAGGAGAAGAAGAAGAAGAAGACATACACGTTTATACTCTATCTCCCTCCTTAGAGTCTCTCTCTCTCTCTCTCTGCTACTTTTCATTCATCCCAACAAATCTCTTCTCTTTTTTTTTATATAAAACTCTTTTGCTACTTTTTAGCCATTTTTAAAAATACATTCTTGATCTACCTAAAAACCTTTAAAATTTGTCAAAAAAATTTGACCTACTTTTTCTGCACCATTTTTTTTTGTCCTTCAGCTCAATGAATCTATTTTTTGACCTCCTGAATTTCGTAGAATAAGAAATTTGACCTACTTTTTAGACGATTTTCTCATACATTTAGAATCTCATATATTCAAAACTAATGAAAATTTCATGAATTTTGAGCTAGAAATCGTTAAAAACGGTTCCAAACTAGCCGAGTTGGAGCGTTTTGAAATTTTTACTGAGGCTTATAAGTTTTTGTAGTTTGTAGCTTYTTAGCCTCAGTAAAAACTTCAAACTGCGATAACTCGGTTATTTTTGAACCGTTTTCGATCGTCTTTGAATGAAAATTCACATGTTCCGCTTTTTTAATTGAAACTACAAACTACAAGAGTTAGCCTCAGTAAAACTTATTTTTCCGCCGTTTTGAACGCATTTTGACTCAAAATTCGTGATTTTTTTTTCGTTTTTTGAGCTCAAAATTGTGTAGTTTGCAGGCCTATTTAATTTTTTTAGCTCTAAAAAATTTTCCTGCCGAAAAAAACGAAAAATTGCACTTTTTGAGTAATCTGGCGCCTTCGAAACCCCGTGCTAAAATCCCGTTAAACTCTCACTTTTTCGGGTTTTATGCAAAATTTCGCTATTCTCACATCAATTTTTTTGACACTGTTTGACCCATTTTCAAGTCAAAATTTCTCTGTTTTTTACTAGATTTTGGTTGTCTTCTGCAATTTTTCAGTCATTTAGGTGATTTCGATAGTTTCAAGCTTATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAGACGATTTTCTCATACATTTAG</pcr_primer_p1>
		<pcr_primer_p2>AGTCAAAATGCGTTCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>TTTAGACGATTTTCTCATACATTTAGAATCTCATATATTCAAAACTAATGAAAATTTCATGAATTTTGAGCTAGAAATCGTTAAAAACGGTTCCAAACTAGCCGAGTTGGAGCGTTTTGAAATTTTTACTGAGGCTTATAAGTTTTTGTAGTTTGTAGCTTTTTAGCCTCAGTAAAAACTTCAAACTGCGATAACTCGGTTATTTTTGAACCGTTTTCGATCGTCTTTGAATGAAAATTCACATGTTCCGCTTTTTTAATTGAAACTACAAACTACAAGAGTTAGCCTCAGTAAAACTTATTTTTCCGCCGTTTTGAACGCATTTTGACT</canonical_amplicon>
		<polymorphic_amplicon>TTTAGACGATTTTCTCATACATTTAGAATCTCATATATTCAAAACTAATGAAAATTTCATGAATTTTGAGCTAGAAATCGTTAAAAACGGTTCCAAACTAGCCGAGTTGGAGCGTTTTGAAATTTTTACTGAGGCTTATAAGTTTTTGTAGTTTGTAGCTTYTTAGCCTCAGTAAAAACTTCAAACTGCGATAACTCGGTTATTTTTGAACCGTTTTCGATCGTCTTTGAATGAAAATTCACATGTTCCGCTTTTTTAATTGAAACTACAAACTACAAGAGTTAGCCTCAGTAAAACTTATTTTTCCGCCGTTTTGAACGCATTTTGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23802</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>450605</contig_pos>
        <strand></strand>
        <context>ctgcgataac[T/G]cggttatttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTGTAGTTTGTAGCTTTTTAGCCTCAGTAAAAACTTCAAACTGCGATAAC</left_flank>
        <right_flank>CGGTTATTTTTGAACCGTTTTCGATCGTCTTTGAATGAAAATTCACATGT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGGAGAAGAAGAAGAAGAAGACATACACGTTTATACTCTATCTCCCTCCTTAGAGTCTCTCTCTCTCTCTCTCTGCTACTTTTCATTCATCCCAACAAATCTCTTCTCTTTTTTTTTATATAAAACTCTTTTGCTACTTTTTAGCCATTTTTAAAAATACATTCTTGATCTACCTAAAAACCTTTAAAATTTGTCAAAAAAATTTGACCTACTTTTTCTGCACCATTTTTTTTTGTCCTTCAGCTCAATGAATCTATTTTTTGACCTCCTGAATTTCGTAGAATAAGAAATTTGACCTACTTTTTAGACGATTTTCTCATACATTTAGAATCTCATATATTCAAAACTAATGAAAATTTCATGAATTTTGAGCTAGAAATCGTTAAAAACGGTTCCAAACTAGCCGAGTTGGAGCGTTTTGAAATTTTTACTGAGGCTTATAAGTTTTTGTAGTTTGTAGCTTTTTAGCCTCAGTAAAAACTTCAAACTGCGATAACTCGGTTATTTTTGAACCGTTTTCGATCGTCTTTGAATGAAAATTCACATGTTCCGCTTTTTTAATTGAAACTACAAACTACAAGAGTTAGCCTCAGTAAAACTTATTTTTCCGCCGTTTTGAACGCATTTTGACTCAAAATTCGTGATTTTTTTTTCGTTTTTTGAGCTCAAAATTGTGTAGTTTGCAGGCCTATTTAATTTTTTTAGCTCTAAAAAATTTTCCTGCCGAAAAAAACGAAAAATTGCACTTTTTGAGTAATCTGGCGCCTTCGAAACCCCGTGCTAAAATCCCGTTAAACTCTCACTTTTTCGGGTTTTATGCAAAATTTCGCTATTCTCACATCAATTTTTTTGACACTGTTTGACCCATTTTCAAGTCAAAATTTCTCTGTTTTTTACTAGATTTTGGTTGTCTTCTGCAATTTTTCAGTCATTTAGGTGATTTCGATAGTTTCAAGCTTATTTTAATACATTTTTAGATTTGAAGCTTAAATTACTGA</canonical>
            <polymorphic>GGAGGAGAAGAAGAAGAAGAAGACATACACGTTTATACTCTATCTCCCTCCTTAGAGTCTCTCTCTCTCTCTCTCTGCTACTTTTCATTCATCCCAACAAATCTCTTCTCTTTTTTTTTATATAAAACTCTTTTGCTACTTTTTAGCCATTTTTAAAAATACATTCTTGATCTACCTAAAAACCTTTAAAATTTGTCAAAAAAATTTGACCTACTTTTTCTGCACCATTTTTTTTTGTCCTTCAGCTCAATGAATCTATTTTTTGACCTCCTGAATTTCGTAGAATAAGAAATTTGACCTACTTTTTAGACGATTTTCTCATACATTTAGAATCTCATATATTCAAAACTAATGAAAATTTCATGAATTTTGAGCTAGAAATCGTTAAAAACGGTTCCAAACTAGCCGAGTTGGAGCGTTTTGAAATTTTTACTGAGGCTTATAAGTTTTTGTAGTTTGTAGCTTTTTAGCCTCAGTAAAAACTTCAAACTGCGATAACKCGGTTATTTTTGAACCGTTTTCGATCGTCTTTGAATGAAAATTCACATGTTCCGCTTTTTTAATTGAAACTACAAACTACAAGAGTTAGCCTCAGTAAAACTTATTTTTCCGCCGTTTTGAACGCATTTTGACTCAAAATTCGTGATTTTTTTTTCGTTTTTTGAGCTCAAAATTGTGTAGTTTGCAGGCCTATTTAATTTTTTTAGCTCTAAAAAATTTTCCTGCCGAAAAAAACGAAAAATTGCACTTTTTGAGTAATCTGGCGCCTTCGAAACCCCGTGCTAAAATCCCGTTAAACTCTCACTTTTTCGGGTTTTATGCAAAATTTCGCTATTCTCACATCAATTTTTTTGACACTGTTTGACCCATTTTCAAGTCAAAATTTCTCTGTTTTTTACTAGATTTTGGTTGTCTTCTGCAATTTTTCAGTCATTTAGGTGATTTCGATAGTTTCAAGCTTATTTTAATACATTTTTAGATTTGAAGCTTAAATTACTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAGACGATTTTCTCATACATTTAG</pcr_primer_p1>
		<pcr_primer_p2>AGTCAAAATGCGTTCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>TTTAGACGATTTTCTCATACATTTAGAATCTCATATATTCAAAACTAATGAAAATTTCATGAATTTTGAGCTAGAAATCGTTAAAAACGGTTCCAAACTAGCCGAGTTGGAGCGTTTTGAAATTTTTACTGAGGCTTATAAGTTTTTGTAGTTTGTAGCTTTTTAGCCTCAGTAAAAACTTCAAACTGCGATAACTCGGTTATTTTTGAACCGTTTTCGATCGTCTTTGAATGAAAATTCACATGTTCCGCTTTTTTAATTGAAACTACAAACTACAAGAGTTAGCCTCAGTAAAACTTATTTTTCCGCCGTTTTGAACGCATTTTGACT</canonical_amplicon>
		<polymorphic_amplicon>TTTAGACGATTTTCTCATACATTTAGAATCTCATATATTCAAAACTAATGAAAATTTCATGAATTTTGAGCTAGAAATCGTTAAAAACGGTTCCAAACTAGCCGAGTTGGAGCGTTTTGAAATTTTTACTGAGGCTTATAAGTTTTTGTAGTTTGTAGCTTTTTAGCCTCAGTAAAAACTTCAAACTGCGATAACKCGGTTATTTTTGAACCGTTTTCGATCGTCTTTGAATGAAAATTCACATGTTCCGCTTTTTTAATTGAAACTACAAACTACAAGAGTTAGCCTCAGTAAAACTTATTTTTCCGCCGTTTTGAACGCATTTTGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23803</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>450634</contig_pos>
        <strand></strand>
        <context>tttcgatcgt[C/T]tttgaatgaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAACTTCAAACTGCGATAACTCGGTTATTTTTGAACCGTTTTCGATCGT</left_flank>
        <right_flank>TTTGAATGAAAATTCACATGTTCCGCTTTTTTAATTGAAACTACAAACTA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTTTATACTCTATCTCCCTCCTTAGAGTCTCTCTCTCTCTCTCTCTGCTACTTTTCATTCATCCCAACAAATCTCTTCTCTTTTTTTTTATATAAAACTCTTTTGCTACTTTTTAGCCATTTTTAAAAATACATTCTTGATCTACCTAAAAACCTTTAAAATTTGTCAAAAAAATTTGACCTACTTTTTCTGCACCATTTTTTTTTGTCCTTCAGCTCAATGAATCTATTTTTTGACCTCCTGAATTTCGTAGAATAAGAAATTTGACCTACTTTTTAGACGATTTTCTCATACATTTAGAATCTCATATATTCAAAACTAATGAAAATTTCATGAATTTTGAGCTAGAAATCGTTAAAAACGGTTCCAAACTAGCCGAGTTGGAGCGTTTTGAAATTTTTACTGAGGCTTATAAGTTTTTGTAGTTTGTAGCTTTTTAGCCTCAGTAAAAACTTCAAACTGCGATAACTCGGTTATTTTTGAACCGTTTTCGATCGTCTTTGAATGAAAATTCACATGTTCCGCTTTTTTAATTGAAACTACAAACTACAAGAGTTAGCCTCAGTAAAACTTATTTTTCCGCCGTTTTGAACGCATTTTGACTCAAAATTCGTGATTTTTTTTTCGTTTTTTGAGCTCAAAATTGTGTAGTTTGCAGGCCTATTTAATTTTTTTAGCTCTAAAAAATTTTCCTGCCGAAAAAAACGAAAAATTGCACTTTTTGAGTAATCTGGCGCCTTCGAAACCCCGTGCTAAAATCCCGTTAAACTCTCACTTTTTCGGGTTTTATGCAAAATTTCGCTATTCTCACATCAATTTTTTTGACACTGTTTGACCCATTTTCAAGTCAAAATTTCTCTGTTTTTTACTAGATTTTGGTTGTCTTCTGCAATTTTTCAGTCATTTAGGTGATTTCGATAGTTTCAAGCTTATTTTAATACATTTTTAGATTTGAAGCTTAAATTACTGATTTCTTATCCCTTGTTCATTGTAATAGGT</canonical>
            <polymorphic>CGTTTATACTCTATCTCCCTCCTTAGAGTCTCTCTCTCTCTCTCTCTGCTACTTTTCATTCATCCCAACAAATCTCTTCTCTTTTTTTTTATATAAAACTCTTTTGCTACTTTTTAGCCATTTTTAAAAATACATTCTTGATCTACCTAAAAACCTTTAAAATTTGTCAAAAAAATTTGACCTACTTTTTCTGCACCATTTTTTTTTGTCCTTCAGCTCAATGAATCTATTTTTTGACCTCCTGAATTTCGTAGAATAAGAAATTTGACCTACTTTTTAGACGATTTTCTCATACATTTAGAATCTCATATATTCAAAACTAATGAAAATTTCATGAATTTTGAGCTAGAAATCGTTAAAAACGGTTCCAAACTAGCCGAGTTGGAGCGTTTTGAAATTTTTACTGAGGCTTATAAGTTTTTGTAGTTTGTAGCTTTTTAGCCTCAGTAAAAACTTCAAACTGCGATAACTCGGTTATTTTTGAACCGTTTTCGATCGTYTTTGAATGAAAATTCACATGTTCCGCTTTTTTAATTGAAACTACAAACTACAAGAGTTAGCCTCAGTAAAACTTATTTTTCCGCCGTTTTGAACGCATTTTGACTCAAAATTCGTGATTTTTTTTTCGTTTTTTGAGCTCAAAATTGTGTAGTTTGCAGGCCTATTTAATTTTTTTAGCTCTAAAAAATTTTCCTGCCGAAAAAAACGAAAAATTGCACTTTTTGAGTAATCTGGCGCCTTCGAAACCCCGTGCTAAAATCCCGTTAAACTCTCACTTTTTCGGGTTTTATGCAAAATTTCGCTATTCTCACATCAATTTTTTTGACACTGTTTGACCCATTTTCAAGTCAAAATTTCTCTGTTTTTTACTAGATTTTGGTTGTCTTCTGCAATTTTTCAGTCATTTAGGTGATTTCGATAGTTTCAAGCTTATTTTAATACATTTTTAGATTTGAAGCTTAAATTACTGATTTCTTATCCCTTGTTCATTGTAATAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAGACGATTTTCTCATACATTTAG</pcr_primer_p1>
		<pcr_primer_p2>AGTCAAAATGCGTTCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>TTTAGACGATTTTCTCATACATTTAGAATCTCATATATTCAAAACTAATGAAAATTTCATGAATTTTGAGCTAGAAATCGTTAAAAACGGTTCCAAACTAGCCGAGTTGGAGCGTTTTGAAATTTTTACTGAGGCTTATAAGTTTTTGTAGTTTGTAGCTTTTTAGCCTCAGTAAAAACTTCAAACTGCGATAACTCGGTTATTTTTGAACCGTTTTCGATCGTCTTTGAATGAAAATTCACATGTTCCGCTTTTTTAATTGAAACTACAAACTACAAGAGTTAGCCTCAGTAAAACTTATTTTTCCGCCGTTTTGAACGCATTTTGACT</canonical_amplicon>
		<polymorphic_amplicon>TTTAGACGATTTTCTCATACATTTAGAATCTCATATATTCAAAACTAATGAAAATTTCATGAATTTTGAGCTAGAAATCGTTAAAAACGGTTCCAAACTAGCCGAGTTGGAGCGTTTTGAAATTTTTACTGAGGCTTATAAGTTTTTGTAGTTTGTAGCTTTTTAGCCTCAGTAAAAACTTCAAACTGCGATAACTCGGTTATTTTTGAACCGTTTTCGATCGTYTTTGAATGAAAATTCACATGTTCCGCTTTTTTAATTGAAACTACAAACTACAAGAGTTAGCCTCAGTAAAACTTATTTTTCCGCCGTTTTGAACGCATTTTGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23804</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>451953</contig_pos>
        <strand>+</strand>
        <context>TATRAATTTT[A/C]CCGAAAATAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTCTCGTAAGTCTTTTTTTTTGGGTGAGACGGGTGGGATTATAAATTTT</left_flank>
        <right_flank>CCGAAAATAGAATAAATTTCCAACATATCTATCCAAAAACGAGTTTTCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCGGATTCGCGTCTCCGACGGACGACACGATGCTGAAGCGGCGTGCCACGTGGCACTCGTCGATCGCAACGACCACGCGCCACACATTCACGGAGCCACAGAGCACAGAATCAGAGAAGACGTGCCGAGAGGAACAGTCATCGGACAGTACACGACGAGCGACAAGGATGCCGGTGACGTGGCAAGGTAAAGGGGGGCTCTGGGTGACACTATTGGGGTTGGTGGCGCTGATGGGTTGTTTCATTGGTCATGCGGAGGCGTTTACGGACCTTTCGCTGCCATTCGGACTTGAACCATCGGTTGCCAAGTCGCGGTTCTCATCGCTTGTCGGTGGAGTCCGTGCCAGGGATATACATGTGTTTGTGATGAAAAATATCAGTGAGGATACGCCGGTCGGAACGGTTCTTGAGACTTTTAAGGCTCACGATCCGAGTAATCCAATGTACAACTTCTCGTAAGTCTTTTTTTTTGGGTGAGACGGGTGGGATTATAAATTTTACCGAAAATAGAATAAATTTCCAACATATCTATCCAAAAACGAGTTTTCTAGCTGGAAAACTAGCCGAGATACAGCGGTTTTACGTTTTACTGAGGCTTAGAGTTTTTGTAGTTTGTAGTCGCTAAGCCTCAGTAAAAATGTTCAAGCTTCACGTGAAAATTCGTTAAACTTTTAATTTTCACGTACGTTTTGAAGATTTTCCTGAGGCTTAGCAATTTATGTAGTTTGTAGTCGCTGAAATTTCCAGCATTTCTATCCAAAAACGACTTTTCTAGCTGAAAAACTAGCCGAGTTATAGTGCTTTTAAGTTTTACTGAGGCTTAGAGAATTTTCGTAGTTTGTAGTCTAAGCCTCAGTAAAAATTTTACGTGAAAAAAAATTCTTTCAAATTTTAATTTCCACGTATTTTTTTCTCAAATTTTTCACGTGTTAAAAAAATCTTGAGGCTTAGCGTTTTGTAGTTTGTAGTCGGTAAGCCTCAGTAAAAAATACAAACCGCT</canonical>
            <polymorphic>TGCGGATTCGCGTCTCCGACGGACGACACGATGCTGAAGCGGCGTGCCACGTGGCACTCGTCGATCGCAACGACCACGCGCCACACATTCACGGAGCCACAGAGCACAGAATCAGAGAAGACGTGCCGAGAGGAACAGTCATCGGACAGTACACGACGAGCGACAAGGATGCCGGTGACGTGGCAAGGTAAAGGGGGGCTCTGGGTGACACTATTGGGGTTGGTGGCGCTGATGGGTTGTTTCATTGGTCATGCGGAGGCGTTTACGGACCTTTCGCTGCCATTCGGACTTGAACCATCGGTTGCCAAGTCGCGGTTCTCATCGCTTGTCGGTGGAGTCCGTGCCAGGGATATACATGTGTTTGTGATGAAAAATATCAGTGAGGATACGCCGGTCGGAACGGTTCTTGAGACTTTTAAGGCTCACGATCCGAGTAATCCAATGTACAACTTCTCGTAAGTCTTTTTTTTTGGGTGAGACGGGTGGGATTATAAATTTTMCCGAAAATAGAATAAATTTCCAACATATCTATCCAAAAACGAGTTTTCTAGCTGGAAAACTAGCCGAGATACAGCGGTTTTACGTTTTACTGAGGCTTAGAGTTTTTGTAGTTTGTAGTCGCTAAGCCTCAGTAAAAATGTTCAAGCTTCACGTGAAAATTCGTTAAACTTTTAATTTTCACGTACGTTTTGAAGATTTTCCTGAGGCTTAGCAATTTATGTAGTTTGTAGTCGCTGAAATTTCCAGCATTTCTATCCAAAAACGACTTTTCTAGCTGAAAAACTAGCCGAGTTATAGTGCTTTTAAGTTTTACTGAGGCTTAGAGAATTTTCGTAGTTTGTAGTCTAAGCCTCAGTAAAAATTTTACGTGAAAAAAAATTCTTTCAAATTTTAATTTCCACGTATTTTTTTCTCAAATTTTTCACGTGTTAAAAAAATCTTGAGGCTTAGCGTTTTGTAGTTTGTAGTCGGTAAGCCTCAGTAAAAAATACAAACCGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTACAACTTCTCGTAAGTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAAAAATCAATGAGGGAATG</pcr_primer_p2>
		<pcr_amplicon_size>725</pcr_amplicon_size>
		<canonical_amplicon>TGTACAACTTCTCGTAAGTCTTTTTTTTTGGGTGAGACGGGTGGGATTATAAATTTTACCGAAAATAGAATAAATTT</canonical_amplicon>
		<polymorphic_amplicon>TGTACAACTTCTCGTAAGTCTTTTTTTTTGGGTGAGACGGGTGGGATTATAAATTTTMCCGAAAATAGAATAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23805</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>451998</contig_pos>
        <strand></strand>
        <context>aaaaacgagt[T/C]ttctagctgg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTTTACCGAAAATAGAATAAATTTCCAACATATCTATCCAAAAACGAGT</left_flank>
        <right_flank>TTCTAGCTGGAAAACTAGCCGAGATACAGCGGTTTTACGTTTTACTGAGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCACGTGGCACTCGTCGATCGCAACGACCACGCGCCACACATTCACGGAGCCACAGAGCACAGAATCAGAGAAGACGTGCCGAGAGGAACAGTCATCGGACAGTACACGACGAGCGACAAGGATGCCGGTGACGTGGCAAGGTAAAGGGGGGCTCTGGGTGACACTATTGGGGTTGGTGGCGCTGATGGGTTGTTTCATTGGTCATGCGGAGGCGTTTACGGACCTTTCGCTGCCATTCGGACTTGAACCATCGGTTGCCAAGTCGCGGTTCTCATCGCTTGTCGGTGGAGTCCGTGCCAGGGATATACATGTGTTTGTGATGAAAAATATCAGTGAGGATACGCCGGTCGGAACGGTTCTTGAGACTTTTAAGGCTCACGATCCGAGTAATCCAATGTACAACTTCTCGTAAGTCTTTTTTTTTGGGTGAGACGGGTGGGATTATAAATTTTACCGAAAATAGAATAAATTTCCAACATATCTATCCAAAAACGAGTTTTCTAGCTGGAAAACTAGCCGAGATACAGCGGTTTTACGTTTTACTGAGGCTTAGAGTTTTTGTAGTTTGTAGTCGCTAAGCCTCAGTAAAAATGTTCAAGCTTCACGTGAAAATTCGTTAAACTTTTAATTTTCACGTACGTTTTGAAGATTTTCCTGAGGCTTAGCAATTTATGTAGTTTGTAGTCGCTGAAATTTCCAGCATTTCTATCCAAAAACGACTTTTCTAGCTGAAAAACTAGCCGAGTTATAGTGCTTTTAAGTTTTACTGAGGCTTAGAGAATTTTCGTAGTTTGTAGTCTAAGCCTCAGTAAAAATTTTACGTGAAAAAAAATTCTTTCAAATTTTAATTTCCACGTATTTTTTTCTCAAATTTTTCACGTGTTAAAAAAATCTTGAGGCTTAGCGTTTTGTAGTTTGTAGTCGGTAAGCCTCAGTAAAAAATACAAACCGCTATATCTCGGTGATTTCTGAACCGTTTTCGATCGTTCTTGGCTGGA</canonical>
            <polymorphic>GCCACGTGGCACTCGTCGATCGCAACGACCACGCGCCACACATTCACGGAGCCACAGAGCACAGAATCAGAGAAGACGTGCCGAGAGGAACAGTCATCGGACAGTACACGACGAGCGACAAGGATGCCGGTGACGTGGCAAGGTAAAGGGGGGCTCTGGGTGACACTATTGGGGTTGGTGGCGCTGATGGGTTGTTTCATTGGTCATGCGGAGGCGTTTACGGACCTTTCGCTGCCATTCGGACTTGAACCATCGGTTGCCAAGTCGCGGTTCTCATCGCTTGTCGGTGGAGTCCGTGCCAGGGATATACATGTGTTTGTGATGAAAAATATCAGTGAGGATACGCCGGTCGGAACGGTTCTTGAGACTTTTAAGGCTCACGATCCGAGTAATCCAATGTACAACTTCTCGTAAGTCTTTTTTTTTGGGTGAGACGGGTGGGATTATAAATTTTACCGAAAATAGAATAAATTTCCAACATATCTATCCAAAAACGAGTYTTCTAGCTGGAAAACTAGCCGAGATACAGCGGTTTTACGTTTTACTGAGGCTTAGAGTTTTTGTAGTTTGTAGTCGCTAAGCCTCAGTAAAAATGTTCAAGCTTCACGTGAAAATTCGTTAAACTTTTAATTTTCACGTACGTTTTGAAGATTTTCCTGAGGCTTAGCAATTTATGTAGTTTGTAGTCGCTGAAATTTCCAGCATTTCTATCCAAAAACGACTTTTCTAGCTGAAAAACTAGCCGAGTTATAGTGCTTTTAAGTTTTACTGAGGCTTAGAGAATTTTCGTAGTTTGTAGTCTAAGCCTCAGTAAAAATTTTACGTGAAAAAAAATTCTTTCAAATTTTAATTTCCACGTATTTTTTTCTCAAATTTTTCACGTGTTAAAAAAATCTTGAGGCTTAGCGTTTTGTAGTTTGTAGTCGGTAAGCCTCAGTAAAAAATACAAACCGCTATATCTCGGTGATTTCTGAACCGTTTTCGATCGTTCTTGGCTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTACAACTTCTCGTAAGTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAAAAATCAATGAGGGAATG</pcr_primer_p2>
		<pcr_amplicon_size>725</pcr_amplicon_size>
		<canonical_amplicon>TGTACAACTTCTCGTAAGTCTTTTTTTTTGGGTGAGACGGGTGGGATTATAAATTTTACCGAAAATAGAATAAATTTCCAACATATCTATCCAAAAACGAGTTTTCTAGCTGGAAAACTAGC</canonical_amplicon>
		<polymorphic_amplicon>TGTACAACTTCTCGTAAGTCTTTTTTTTTGGGTGAGACGGGTGGGATTATAAATTTTACCGAAAATAGAATAAATTTCCAACATATCTATCCAAAAACGAGTYTTCTAGCTGGAAAACTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23806</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>452263</contig_pos>
        <strand></strand>
        <context>gcttttaagt[T/A]ttactgaggy</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAAACGACTTTTCTAGCTGAAAAACTAGCCGAGTTATAGTGCTTTTAAGT</left_flank>
        <right_flank>TTACTGAGGCTTAGAGAATTTTCGTAGTTTGTAGTCTAAGCCTCAGTAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCGGTTCTCATCGCTTGTCGGTGGAGTCCGTGCCAGGGATATACATGTGTTTGTGATGAAAAATATCAGTGAGGATACGCCGGTCGGAACGGTTCTTGAGACTTTTAAGGCTCACGATCCGAGTAATCCAATGTACAACTTCTCGTAAGTCTTTTTTTTTGGGTGAGACGGGTGGGATTATAAATTTTACCGAAAATAGAATAAATTTCCAACATATCTATCCAAAAACGAGTTTTCTAGCTGGAAAACTAGCCGAGATACAGCGGTTTTACGTTTTACTGAGGCTTAGAGTTTTTGTAGTTTGTAGTCGCTAAGCCTCAGTAAAAATGTTCAAGCTTCACGTGAAAATTCGTTAAACTTTTAATTTTCACGTACGTTTTGAAGATTTTCCTGAGGCTTAGCAATTTATGTAGTTTGTAGTCGCTGAAATTTCCAGCATTTCTATCCAAAAACGACTTTTCTAGCTGAAAAACTAGCCGAGTTATAGTGCTTTTAAGTTTTACTGAGGCTTAGAGAATTTTCGTAGTTTGTAGTCTAAGCCTCAGTAAAAATTTTACGTGAAAAAAAATTCTTTCAAATTTTAATTTCCACGTATTTTTTTCTCAAATTTTTCACGTGTTAAAAAAATCTTGAGGCTTAGCGTTTTGTAGTTTGTAGTCGGTAAGCCTCAGTAAAAAATACAAACCGCTATATCTCGGTGATTTCTGAACCGTTTTCGATCGTTCTTGGCTGGAAATTAGTCAAATTTTCTGCTAAATACAAACTACAAAATTTCCTAAGCCTCAGTAAAAATTTCGAATCGCTATAACTCAATTATTTCTGAACTATTTCGAAGCCATTCCCTCATTGATTTTTGTCCTCCTCGATTTCAAAACGTTTCCTCGGCTTTTCCCTTTCGTTTGAAATTTTCTAAAATCGTCCCCCGATGATGATTCATCAGATAGTTATCCTTCATCTTCTTCTTCATCTCATCGGAAGACACATCATTGGAATTTCTGC</canonical>
            <polymorphic>CGCGGTTCTCATCGCTTGTCGGTGGAGTCCGTGCCAGGGATATACATGTGTTTGTGATGAAAAATATCAGTGAGGATACGCCGGTCGGAACGGTTCTTGAGACTTTTAAGGCTCACGATCCGAGTAATCCAATGTACAACTTCTCGTAAGTCTTTTTTTTTGGGTGAGACGGGTGGGATTATAAATTTTACCGAAAATAGAATAAATTTCCAACATATCTATCCAAAAACGAGTTTTCTAGCTGGAAAACTAGCCGAGATACAGCGGTTTTACGTTTTACTGAGGCTTAGAGTTTTTGTAGTTTGTAGTCGCTAAGCCTCAGTAAAAATGTTCAAGCTTCACGTGAAAATTCGTTAAACTTTTAATTTTCACGTACGTTTTGAAGATTTTCCTGAGGCTTAGCAATTTATGTAGTTTGTAGTCGCTGAAATTTCCAGCATTTCTATCCAAAAACGACTTTTCTAGCTGAAAAACTAGCCGAGTTATAGTGCTTTTAAGTWTTACTGAGGCTTAGAGAATTTTCGTAGTTTGTAGTCTAAGCCTCAGTAAAAATTTTACGTGAAAAAAAATTCTTTCAAATTTTAATTTCCACGTATTTTTTTCTCAAATTTTTCACGTGTTAAAAAAATCTTGAGGCTTAGCGTTTTGTAGTTTGTAGTCGGTAAGCCTCAGTAAAAAATACAAACCGCTATATCTCGGTGATTTCTGAACCGTTTTCGATCGTTCTTGGCTGGAAATTAGTCAAATTTTCTGCTAAATACAAACTACAAAATTTCCTAAGCCTCAGTAAAAATTTCGAATCGCTATAACTCAATTATTTCTGAACTATTTCGAAGCCATTCCCTCATTGATTTTTGTCCTCCTCGATTTCAAAACGTTTCCTCGGCTTTTCCCTTTCGTTTGAAATTTTCTAAAATCGTCCCCCGATGATGATTCATCAGATAGTTATCCTTCATCTTCTTCTTCATCTCATCGGAAGACACATCATTGGAATTTCTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTACAACTTCTCGTAAGTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAAAAATCAATGAGGGAATG</pcr_primer_p2>
		<pcr_amplicon_size>725</pcr_amplicon_size>
		<canonical_amplicon>TGTACAACTTCTCGTAAGTCTTTTTTTTTGGGTGAGACGGGTGGGATTATAAATTTTACCGAAAATAGAATAAATTTCCAACATATCTATCCAAAAACGAGTTTTCTAGCTGGAAAACTAGCCGAGATACAGCGGTTTTACGTTTTACTGAGGCTTAGAGTTTTTGTAGTTTGTAGTCGCTAAGCCTCAGTAAAAATGTTCAAGCTTCACGTGAAAATTCGTTAAACTTTTAATTTTCACGTACGTTTTGAAGATTTTCCTGAGGCTTAGCAATTTATGTAGTTTGTAGTCGCTGAAATTTCCAGCATTTCTATCCAAAAACGACTTTTCTAGCTGAAAAACTAGCCGAGTTATAGTGCTTTTAAGTTTTACTGAGGCTTAGAGAATTTTCGTAGTTTGTAGTCTAAGCCTCAGTAAAAATTTTACGTGAAAAAAAATTCTTTCAAATTTTAATTTCCACGTATTTTTTTCTCAAATTTTTCACGTGTTAAAAAAATCTTGAGGCTTAGCGTTTTGTAGTTTGTAGTCGGTAAGCCTCAGTAAAAAATACAAACCGCTATATCTCGGTGATTTCTGAACCGTTTTCGATCGTTCTTGGCTGGAAATTAGTCAAATTTTCTGCTAAATACAAACTACAAAATTTCCTAAGCCTCAGTAAAAATTTCGAATCGCTATAACTCAATTATTTCTGAACTATTTCGAAGCCATTCCCTCATTGATTTTTG</canonical_amplicon>
		<polymorphic_amplicon>TGTACAACTTCTCGTAAGTCTTTTTTTTTGGGTGAGACGGGTGGGATTATAAATTTTACCGAAAATAGAATAAATTTCCAACATATCTATCCAAAAACGAGTTTTCTAGCTGGAAAACTAGCCGAGATACAGCGGTTTTACGTTTTACTGAGGCTTAGAGTTTTTGTAGTTTGTAGTCGCTAAGCCTCAGTAAAAATGTTCAAGCTTCACGTGAAAATTCGTTAAACTTTTAATTTTCACGTACGTTTTGAAGATTTTCCTGAGGCTTAGCAATTTATGTAGTTTGTAGTCGCTGAAATTTCCAGCATTTCTATCCAAAAACGACTTTTCTAGCTGAAAAACTAGCCGAGTTATAGTGCTTTTAAGTWTTACTGAGGCTTAGAGAATTTTCGTAGTTTGTAGTCTAAGCCTCAGTAAAAATTTTACGTGAAAAAAAATTCTTTCAAATTTTAATTTCCACGTATTTTTTTCTCAAATTTTTCACGTGTTAAAAAAATCTTGAGGCTTAGCGTTTTGTAGTTTGTAGTCGGTAAGCCTCAGTAAAAAATACAAACCGCTATATCTCGGTGATTTCTGAACCGTTTTCGATCGTTCTTGGCTGGAAATTAGTCAAATTTTCTGCTAAATACAAACTACAAAATTTCCTAAGCCTCAGTAAAAATTTCGAATCGCTATAACTCAATTATTTCTGAACTATTTCGAAGCCATTCCCTCATTGATTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23807</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>452273</contig_pos>
        <strand></strand>
        <context>wttactgagg[C/T]ttagagaatt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTAGCTGAAAAACTAGCCGAGTTATAGTGCTTTTAAGTTTTACTGAGG</left_flank>
        <right_flank>TTAGAGAATTTTCGTAGTTTGTAGTCTAAGCCTCAGTAAAAATTTTACGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGCTTGTCGGTGGAGTCCGTGCCAGGGATATACATGTGTTTGTGATGAAAAATATCAGTGAGGATACGCCGGTCGGAACGGTTCTTGAGACTTTTAAGGCTCACGATCCGAGTAATCCAATGTACAACTTCTCGTAAGTCTTTTTTTTTGGGTGAGACGGGTGGGATTATAAATTTTACCGAAAATAGAATAAATTTCCAACATATCTATCCAAAAACGAGTTTTCTAGCTGGAAAACTAGCCGAGATACAGCGGTTTTACGTTTTACTGAGGCTTAGAGTTTTTGTAGTTTGTAGTCGCTAAGCCTCAGTAAAAATGTTCAAGCTTCACGTGAAAATTCGTTAAACTTTTAATTTTCACGTACGTTTTGAAGATTTTCCTGAGGCTTAGCAATTTATGTAGTTTGTAGTCGCTGAAATTTCCAGCATTTCTATCCAAAAACGACTTTTCTAGCTGAAAAACTAGCCGAGTTATAGTGCTTTTAAGTTTTACTGAGGCTTAGAGAATTTTCGTAGTTTGTAGTCTAAGCCTCAGTAAAAATTTTACGTGAAAAAAAATTCTTTCAAATTTTAATTTCCACGTATTTTTTTCTCAAATTTTTCACGTGTTAAAAAAATCTTGAGGCTTAGCGTTTTGTAGTTTGTAGTCGGTAAGCCTCAGTAAAAAATACAAACCGCTATATCTCGGTGATTTCTGAACCGTTTTCGATCGTTCTTGGCTGGAAATTAGTCAAATTTTCTGCTAAATACAAACTACAAAATTTCCTAAGCCTCAGTAAAAATTTCGAATCGCTATAACTCAATTATTTCTGAACTATTTCGAAGCCATTCCCTCATTGATTTTTGTCCTCCTCGATTTCAAAACGTTTCCTCGGCTTTTCCCTTTCGTTTGAAATTTTCTAAAATCGTCCCCCGATGATGATTCATCAGATAGTTATCCTTCATCTTCTTCTTCATCTCATCGGAAGACACATCATTGGAATTTCTGCCTCCTCCTCC</canonical>
            <polymorphic>ATCGCTTGTCGGTGGAGTCCGTGCCAGGGATATACATGTGTTTGTGATGAAAAATATCAGTGAGGATACGCCGGTCGGAACGGTTCTTGAGACTTTTAAGGCTCACGATCCGAGTAATCCAATGTACAACTTCTCGTAAGTCTTTTTTTTTGGGTGAGACGGGTGGGATTATAAATTTTACCGAAAATAGAATAAATTTCCAACATATCTATCCAAAAACGAGTTTTCTAGCTGGAAAACTAGCCGAGATACAGCGGTTTTACGTTTTACTGAGGCTTAGAGTTTTTGTAGTTTGTAGTCGCTAAGCCTCAGTAAAAATGTTCAAGCTTCACGTGAAAATTCGTTAAACTTTTAATTTTCACGTACGTTTTGAAGATTTTCCTGAGGCTTAGCAATTTATGTAGTTTGTAGTCGCTGAAATTTCCAGCATTTCTATCCAAAAACGACTTTTCTAGCTGAAAAACTAGCCGAGTTATAGTGCTTTTAAGTTTTACTGAGGYTTAGAGAATTTTCGTAGTTTGTAGTCTAAGCCTCAGTAAAAATTTTACGTGAAAAAAAATTCTTTCAAATTTTAATTTCCACGTATTTTTTTCTCAAATTTTTCACGTGTTAAAAAAATCTTGAGGCTTAGCGTTTTGTAGTTTGTAGTCGGTAAGCCTCAGTAAAAAATACAAACCGCTATATCTCGGTGATTTCTGAACCGTTTTCGATCGTTCTTGGCTGGAAATTAGTCAAATTTTCTGCTAAATACAAACTACAAAATTTCCTAAGCCTCAGTAAAAATTTCGAATCGCTATAACTCAATTATTTCTGAACTATTTCGAAGCCATTCCCTCATTGATTTTTGTCCTCCTCGATTTCAAAACGTTTCCTCGGCTTTTCCCTTTCGTTTGAAATTTTCTAAAATCGTCCCCCGATGATGATTCATCAGATAGTTATCCTTCATCTTCTTCTTCATCTCATCGGAAGACACATCATTGGAATTTCTGCCTCCTCCTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>270 227 109 106 95 74 31 26 26 6 6 6 6 6 6</canonical_bands>
                <polymorphic_bands>270 227 109 106 95 74 32 31 26 6 6 6 6 6</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>130 124 101 96 68 64 61 55 51 50 32 32 31 31 30 20 12 12</canonical_bands>
                <polymorphic_bands>130 124 101 96 68 64 63 61 55 51 50 32 31 30 20 12 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTACAACTTCTCGTAAGTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAAAAATCAATGAGGGAATG</pcr_primer_p2>
		<pcr_amplicon_size>725</pcr_amplicon_size>
		<canonical_amplicon>TGTACAACTTCTCGTAAGTCTTTTTTTTTGGGTGAGACGGGTGGGATTATAAATTTTACCGAAAATAGAATAAATTTCCAACATATCTATCCAAAAACGAGTTTTCTAGCTGGAAAACTAGCCGAGATACAGCGGTTTTACGTTTTACTGAGGCTTAGAGTTTTTGTAGTTTGTAGTCGCTAAGCCTCAGTAAAAATGTTCAAGCTTCACGTGAAAATTCGTTAAACTTTTAATTTTCACGTACGTTTTGAAGATTTTCCTGAGGCTTAGCAATTTATGTAGTTTGTAGTCGCTGAAATTTCCAGCATTTCTATCCAAAAACGACTTTTCTAGCTGAAAAACTAGCCGAGTTATAGTGCTTTTAAGTTTTACTGAGGCTTAGAGAATTTTCGTAGTTTGTAGTCTAAGCCTCAGTAAAAATTTTACGTGAAAAAAAATTCTTTCAAATTTTAATTTCCACGTATTTTTTTCTCAAATTTTTCACGTGTTAAAAAAATCTTGAGGCTTAGCGTTTTGTAGTTTGTAGTCGGTAAGCCTCAGTAAAAAATACAAACCGCTATATCTCGGTGATTTCTGAACCGTTTTCGATCGTTCTTGGCTGGAAATTAGTCAAATTTTCTGCTAAATACAAACTACAAAATTTCCTAAGCCTCAGTAAAAATTTCGAATCGCTATAACTCAATTATTTCTGAACTATTTCGAAGCCATTCCCTCATTGATTTTTG</canonical_amplicon>
		<polymorphic_amplicon>TGTACAACTTCTCGTAAGTCTTTTTTTTTGGGTGAGACGGGTGGGATTATAAATTTTACCGAAAATAGAATAAATTTCCAACATATCTATCCAAAAACGAGTTTTCTAGCTGGAAAACTAGCCGAGATACAGCGGTTTTACGTTTTACTGAGGCTTAGAGTTTTTGTAGTTTGTAGTCGCTAAGCCTCAGTAAAAATGTTCAAGCTTCACGTGAAAATTCGTTAAACTTTTAATTTTCACGTACGTTTTGAAGATTTTCCTGAGGCTTAGCAATTTATGTAGTTTGTAGTCGCTGAAATTTCCAGCATTTCTATCCAAAAACGACTTTTCTAGCTGAAAAACTAGCCGAGTTATAGTGCTTTTAAGTTTTACTGAGGYTTAGAGAATTTTCGTAGTTTGTAGTCTAAGCCTCAGTAAAAATTTTACGTGAAAAAAAATTCTTTCAAATTTTAATTTCCACGTATTTTTTTCTCAAATTTTTCACGTGTTAAAAAAATCTTGAGGCTTAGCGTTTTGTAGTTTGTAGTCGGTAAGCCTCAGTAAAAAATACAAACCGCTATATCTCGGTGATTTCTGAACCGTTTTCGATCGTTCTTGGCTGGAAATTAGTCAAATTTTCTGCTAAATACAAACTACAAAATTTCCTAAGCCTCAGTAAAAATTTCGAATCGCTATAACTCAATTATTTCTGAACTATTTCGAAGCCATTCCCTCATTGATTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23808</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>452286</contig_pos>
        <strand></strand>
        <context>agagaatttt[C/T]gtagtttgta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTAGCCGAGTTATAGTGCTTTTAAGTTTTACTGAGGCTTAGAGAATTTT</left_flank>
        <right_flank>GTAGTTTGTAGTCTAAGCCTCAGTAAAAATTTTACGTGAAAAAAAATTCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGTCCGTGCCAGGGATATACATGTGTTTGTGATGAAAAATATCAGTGAGGATACGCCGGTCGGAACGGTTCTTGAGACTTTTAAGGCTCACGATCCGAGTAATCCAATGTACAACTTCTCGTAAGTCTTTTTTTTTGGGTGAGACGGGTGGGATTATAAATTTTACCGAAAATAGAATAAATTTCCAACATATCTATCCAAAAACGAGTTTTCTAGCTGGAAAACTAGCCGAGATACAGCGGTTTTACGTTTTACTGAGGCTTAGAGTTTTTGTAGTTTGTAGTCGCTAAGCCTCAGTAAAAATGTTCAAGCTTCACGTGAAAATTCGTTAAACTTTTAATTTTCACGTACGTTTTGAAGATTTTCCTGAGGCTTAGCAATTTATGTAGTTTGTAGTCGCTGAAATTTCCAGCATTTCTATCCAAAAACGACTTTTCTAGCTGAAAAACTAGCCGAGTTATAGTGCTTTTAAGTTTTACTGAGGCTTAGAGAATTTTCGTAGTTTGTAGTCTAAGCCTCAGTAAAAATTTTACGTGAAAAAAAATTCTTTCAAATTTTAATTTCCACGTATTTTTTTCTCAAATTTTTCACGTGTTAAAAAAATCTTGAGGCTTAGCGTTTTGTAGTTTGTAGTCGGTAAGCCTCAGTAAAAAATACAAACCGCTATATCTCGGTGATTTCTGAACCGTTTTCGATCGTTCTTGGCTGGAAATTAGTCAAATTTTCTGCTAAATACAAACTACAAAATTTCCTAAGCCTCAGTAAAAATTTCGAATCGCTATAACTCAATTATTTCTGAACTATTTCGAAGCCATTCCCTCATTGATTTTTGTCCTCCTCGATTTCAAAACGTTTCCTCGGCTTTTCCCTTTCGTTTGAAATTTTCTAAAATCGTCCCCCGATGATGATTCATCAGATAGTTATCCTTCATCTTCTTCTTCATCTCATCGGAAGACACATCATTGGAATTTCTGCCTCCTCCTCCGCGTTTTTATGGA</canonical>
            <polymorphic>GGAGTCCGTGCCAGGGATATACATGTGTTTGTGATGAAAAATATCAGTGAGGATACGCCGGTCGGAACGGTTCTTGAGACTTTTAAGGCTCACGATCCGAGTAATCCAATGTACAACTTCTCGTAAGTCTTTTTTTTTGGGTGAGACGGGTGGGATTATAAATTTTACCGAAAATAGAATAAATTTCCAACATATCTATCCAAAAACGAGTTTTCTAGCTGGAAAACTAGCCGAGATACAGCGGTTTTACGTTTTACTGAGGCTTAGAGTTTTTGTAGTTTGTAGTCGCTAAGCCTCAGTAAAAATGTTCAAGCTTCACGTGAAAATTCGTTAAACTTTTAATTTTCACGTACGTTTTGAAGATTTTCCTGAGGCTTAGCAATTTATGTAGTTTGTAGTCGCTGAAATTTCCAGCATTTCTATCCAAAAACGACTTTTCTAGCTGAAAAACTAGCCGAGTTATAGTGCTTTTAAGTTTTACTGAGGCTTAGAGAATTTTYGTAGTTTGTAGTCTAAGCCTCAGTAAAAATTTTACGTGAAAAAAAATTCTTTCAAATTTTAATTTCCACGTATTTTTTTCTCAAATTTTTCACGTGTTAAAAAAATCTTGAGGCTTAGCGTTTTGTAGTTTGTAGTCGGTAAGCCTCAGTAAAAAATACAAACCGCTATATCTCGGTGATTTCTGAACCGTTTTCGATCGTTCTTGGCTGGAAATTAGTCAAATTTTCTGCTAAATACAAACTACAAAATTTCCTAAGCCTCAGTAAAAATTTCGAATCGCTATAACTCAATTATTTCTGAACTATTTCGAAGCCATTCCCTCATTGATTTTTGTCCTCCTCGATTTCAAAACGTTTCCTCGGCTTTTCCCTTTCGTTTGAAATTTTCTAAAATCGTCCCCCGATGATGATTCATCAGATAGTTATCCTTCATCTTCTTCTTCATCTCATCGGAAGACACATCATTGGAATTTCTGCCTCCTCCTCCGCGTTTTTATGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTACAACTTCTCGTAAGTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAAAAATCAATGAGGGAATG</pcr_primer_p2>
		<pcr_amplicon_size>725</pcr_amplicon_size>
		<canonical_amplicon>TGTACAACTTCTCGTAAGTCTTTTTTTTTGGGTGAGACGGGTGGGATTATAAATTTTACCGAAAATAGAATAAATTTCCAACATATCTATCCAAAAACGAGTTTTCTAGCTGGAAAACTAGCCGAGATACAGCGGTTTTACGTTTTACTGAGGCTTAGAGTTTTTGTAGTTTGTAGTCGCTAAGCCTCAGTAAAAATGTTCAAGCTTCACGTGAAAATTCGTTAAACTTTTAATTTTCACGTACGTTTTGAAGATTTTCCTGAGGCTTAGCAATTTATGTAGTTTGTAGTCGCTGAAATTTCCAGCATTTCTATCCAAAAACGACTTTTCTAGCTGAAAAACTAGCCGAGTTATAGTGCTTTTAAGTTTTACTGAGGCTTAGAGAATTTTCGTAGTTTGTAGTCTAAGCCTCAGTAAAAATTTTACGTGAAAAAAAATTCTTTCAAATTTTAATTTCCACGTATTTTTTTCTCAAATTTTTCACGTGTTAAAAAAATCTTGAGGCTTAGCGTTTTGTAGTTTGTAGTCGGTAAGCCTCAGTAAAAAATACAAACCGCTATATCTCGGTGATTTCTGAACCGTTTTCGATCGTTCTTGGCTGGAAATTAGTCAAATTTTCTGCTAAATACAAACTACAAAATTTCCTAAGCCTCAGTAAAAATTTCGAATCGCTATAACTCAATTATTTCTGAACTATTTCGAAGCCATTCCCTCATTGATTTTTG</canonical_amplicon>
		<polymorphic_amplicon>TGTACAACTTCTCGTAAGTCTTTTTTTTTGGGTGAGACGGGTGGGATTATAAATTTTACCGAAAATAGAATAAATTTCCAACATATCTATCCAAAAACGAGTTTTCTAGCTGGAAAACTAGCCGAGATACAGCGGTTTTACGTTTTACTGAGGCTTAGAGTTTTTGTAGTTTGTAGTCGCTAAGCCTCAGTAAAAATGTTCAAGCTTCACGTGAAAATTCGTTAAACTTTTAATTTTCACGTACGTTTTGAAGATTTTCCTGAGGCTTAGCAATTTATGTAGTTTGTAGTCGCTGAAATTTCCAGCATTTCTATCCAAAAACGACTTTTCTAGCTGAAAAACTAGCCGAGTTATAGTGCTTTTAAGTTTTACTGAGGCTTAGAGAATTTTYGTAGTTTGTAGTCTAAGCCTCAGTAAAAATTTTACGTGAAAAAAAATTCTTTCAAATTTTAATTTCCACGTATTTTTTTCTCAAATTTTTCACGTGTTAAAAAAATCTTGAGGCTTAGCGTTTTGTAGTTTGTAGTCGGTAAGCCTCAGTAAAAAATACAAACCGCTATATCTCGGTGATTTCTGAACCGTTTTCGATCGTTCTTGGCTGGAAATTAGTCAAATTTTCTGCTAAATACAAACTACAAAATTTCCTAAGCCTCAGTAAAAATTTCGAATCGCTATAACTCAATTATTTCTGAACTATTTCGAAGCCATTCCCTCATTGATTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23809</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>452863</contig_pos>
        <strand>+</strand>
        <context>ATAAGTAGAA[A/T]CTGTCATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCACAAAGAGCGATGACAGTTTGATGATGTGACAGTAGAATAAGTAGAA</left_flank>
        <right_flank>CTGTCATTTTGGATTTTTGTCAAAAAACGGTTTTTCGTCGTCTTTTTGAT</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTCAAATTTTTCACGTGTTAAAAAAATCTTGAGGCTTAGCGTTTTGTAGTTTGTAGTCGGTAAGCCTCAGTAAAAAATACAAACCGCTATATCTCGGTGATTTCTGAACCGTTTTCGATCGTTCTTGGCTGGAAATTAGTCAAATTTTCTGCTAAATACAAACTACAAAATTTCCTAAGCCTCAGTAAAAATTTCGAATCGCTATAACTCAATTATTTCTGAACTATTTCGAAGCCATTCCCTCATTGATTTTTGTCCTCCTCGATTTCAAAACGTTTCCTCGGCTTTTCCCTTTCGTTTGAAATTTTCTAAAATCGTCCCCCGATGATGATTCATCAGATAGTTATCCTTCATCTTCTTCTTCATCTCATCGGAAGACACATCATTGGAATTTCTGCCTCCTCCTCCGCGTTTTTATGGAAATTATGAATCCAAAAGTTTGAAGTCGTCACAAAGAGCGATGACAGTTTGATGATGTGACAGTAGAATAAGTAGAAACTGTCATTTTGGATTTTTGTCAAAAAACGGTTTTTCGTCGTCTTTTTGATGATGATCTACTTTGCATATATACGCCAGCCGCATAGTATTCGGCCATTTTCGCGCATTTTCCGTCTCCTATAGTGTCTTGTTTCGGGGGGTAATGGTGACCTCGTTCGTCTCCTTTGGCTTCCCCGTTTTACCTACATTTTGGGTGGAAAGAGAGGGGGTGACTTTGGTGGTTGGGAGGTTTTGTTTGGCCGTTTCTCTCTCTCTCTCTCTCTACCACTGGCGGCTGCAAAAAGGTGGTGGCCTTGGAATTTGCTGGCCCCAGAAGAAGCCCCAGAAGAGGACAGGTGCTAAAGGGAGGGATCTAGAAAGGATCTAGGAGAATCTAGAAGAATCTATAATGATCTGGACAGCTTGGCTGATCTAGTAGGAGTTTGAGAATCTTCGATATCTTGAAAACCTGATCCTTTTCAAATTCCAAACAGTTTGGGCTTTTCTGGGCCTGCAGACCA</canonical>
            <polymorphic>TTCTCAAATTTTTCACGTGTTAAAAAAATCTTGAGGCTTAGCGTTTTGTAGTTTGTAGTCGGTAAGCCTCAGTAAAAAATACAAACCGCTATATCTCGGTGATTTCTGAACCGTTTTCGATCGTTCTTGGCTGGAAATTAGTCAAATTTTCTGCTAAATACAAACTACAAAATTTCCTAAGCCTCAGTAAAAATTTCGAATCGCTATAACTCAATTATTTCTGAACTATTTCGAAGCCATTCCCTCATTGATTTTTGTCCTCCTCGATTTCAAAACGTTTCCTCGGCTTTTCCCTTTCGTTTGAAATTTTCTAAAATCGTCCCCCGATGATGATTCATCAGATAGTTATCCTTCATCTTCTTCTTCATCTCATCGGAAGACACATCATTGGAATTTCTGCCTCCTCCTCCGCGTTTTTATGGAAATTATGAATCCAAAAGTTTGAAGTCGTCACAAAGAGCGATGACAGTTTGATGATGTGACAGTAGAATAAGTAGAAWCTGTCATTTTGGATTTTTGTCAAAAAACGGTTTTTCGTCGTCTTTTTGATGATGATCTACTTTGCATATATACGCCAGCCGCATAGTATTCGGCCATTTTCGCGCATTTTCCGTCTCCTATAGTGTCTTGTTTCGGGGGGTAATGGTGACCTCGTTCGTCTCCTTTGGCTTCCCCGTTTTACCTACATTTTGGGTGGAAAGAGAGGGGGTGACTTTGGTGGTTGGGAGGTTTTGTTTGGCCGTTTCTCTCTCTCTCTCTCTCTACCACTGGCGGCTGCAAAAAGGTGGTGGCCTTGGAATTTGCTGGCCCCAGAAGAAGCCCCAGAAGAGGACAGGTGCTAAAGGGAGGGATCTAGAAAGGATCTAGGAGAATCTAGAAGAATCTATAATGATCTGGACAGCTTGGCTGATCTAGTAGGAGTTTGAGAATCTTCGATATCTTGAAAACCTGATCCTTTTCAAATTCCAAACAGTTTGGGCTTTTCTGGGCCTGCAGACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>443 356 112 28 27 18 16</canonical_bands>
                <polymorphic_bands>443 356 112 45 28 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGACACATCATTGGAATTTCT</pcr_primer_p1>
		<pcr_primer_p2>AGACACTATAGGAGACGGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAGACACATCATTGGAATTTCTGCCTCCTCCTCCGCGTTTTTATGGAAATTATGAATCCAAAAGTTTGAAGTCGTCACAAAGAGCGATGACAGTTTGATGATGTGACAGTAGAATAAGTAGAAACTGTCATTTTGGATTTTTGTCAAAAAACGGTTTTTCGTCGTCTTTTTGATGATGATCTACTTTGCATATATACGCCAGCCGCATAGTATTCGGCCATTTTCGCGCATTTTCCGTCTCCTATAGTGTCT</canonical_amplicon>
		<polymorphic_amplicon>AAGACACATCATTGGAATTTCTGCCTCCTCCTCCGCGTTTTTATGGAAATTATGAATCCAAAAGTTTGAAGTCGTCACAAAGAGCGATGACAGTTTGATGATGTGACAGTAGAATAAGTAGAAWCTGTCATTTTGGATTTTTGTCAAAAAACGGTTTTTCGTCGTCTTTTTGATGATGATCTACTTTGCATATATACGCCAGCCGCATAGTATTCGGCCATTTTCGCGCATTTTCCGTCTCCTATAGTGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23810</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>452895</contig_pos>
        <strand>+</strand>
        <context>AAAAAACGGT[G/T]TTTCGTCGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACAGTAGAATAAGTAGAAACTGTCATTTTGGATTTTTGTCAAAAAACGGT</left_flank>
        <right_flank>TTTCGTCGTCTTTTTGATGATGATCTACTTTGCATATATACGCCAGCCGC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGCTTAGCGTTTTGTAGTTTGTAGTCGGTAAGCCTCAGTAAAAAATACAAACCGCTATATCTCGGTGATTTCTGAACCGTTTTCGATCGTTCTTGGCTGGAAATTAGTCAAATTTTCTGCTAAATACAAACTACAAAATTTCCTAAGCCTCAGTAAAAATTTCGAATCGCTATAACTCAATTATTTCTGAACTATTTCGAAGCCATTCCCTCATTGATTTTTGTCCTCCTCGATTTCAAAACGTTTCCTCGGCTTTTCCCTTTCGTTTGAAATTTTCTAAAATCGTCCCCCGATGATGATTCATCAGATAGTTATCCTTCATCTTCTTCTTCATCTCATCGGAAGACACATCATTGGAATTTCTGCCTCCTCCTCCGCGTTTTTATGGAAATTATGAATCCAAAAGTTTGAAGTCGTCACAAAGAGCGATGACAGTTTGATGATGTGACAGTAGAATAAGTAGAAACTGTCATTTTGGATTTTTGTCAAAAAACGGTTTTTCGTCGTCTTTTTGATGATGATCTACTTTGCATATATACGCCAGCCGCATAGTATTCGGCCATTTTCGCGCATTTTCCGTCTCCTATAGTGTCTTGTTTCGGGGGGTAATGGTGACCTCGTTCGTCTCCTTTGGCTTCCCCGTTTTACCTACATTTTGGGTGGAAAGAGAGGGGGTGACTTTGGTGGTTGGGAGGTTTTGTTTGGCCGTTTCTCTCTCTCTCTCTCTCTACCACTGGCGGCTGCAAAAAGGTGGTGGCCTTGGAATTTGCTGGCCCCAGAAGAAGCCCCAGAAGAGGACAGGTGCTAAAGGGAGGGATCTAGAAAGGATCTAGGAGAATCTAGAAGAATCTATAATGATCTGGACAGCTTGGCTGATCTAGTAGGAGTTTGAGAATCTTCGATATCTTGAAAACCTGATCCTTTTCAAATTCCAAACAGTTTGGGCTTTTCTGGGCCTGCAGACCATACCCTATTCTAGAAAGATGGATTCTAGACGT</canonical>
            <polymorphic>GAGGCTTAGCGTTTTGTAGTTTGTAGTCGGTAAGCCTCAGTAAAAAATACAAACCGCTATATCTCGGTGATTTCTGAACCGTTTTCGATCGTTCTTGGCTGGAAATTAGTCAAATTTTCTGCTAAATACAAACTACAAAATTTCCTAAGCCTCAGTAAAAATTTCGAATCGCTATAACTCAATTATTTCTGAACTATTTCGAAGCCATTCCCTCATTGATTTTTGTCCTCCTCGATTTCAAAACGTTTCCTCGGCTTTTCCCTTTCGTTTGAAATTTTCTAAAATCGTCCCCCGATGATGATTCATCAGATAGTTATCCTTCATCTTCTTCTTCATCTCATCGGAAGACACATCATTGGAATTTCTGCCTCCTCCTCCGCGTTTTTATGGAAATTATGAATCCAAAAGTTTGAAGTCGTCACAAAGAGCGATGACAGTTTGATGATGTGACAGTAGAATAAGTAGAAACTGTCATTTTGGATTTTTGTCAAAAAACGGTKTTTCGTCGTCTTTTTGATGATGATCTACTTTGCATATATACGCCAGCCGCATAGTATTCGGCCATTTTCGCGCATTTTCCGTCTCCTATAGTGTCTTGTTTCGGGGGGTAATGGTGACCTCGTTCGTCTCCTTTGGCTTCCCCGTTTTACCTACATTTTGGGTGGAAAGAGAGGGGGTGACTTTGGTGGTTGGGAGGTTTTGTTTGGCCGTTTCTCTCTCTCTCTCTCTCTACCACTGGCGGCTGCAAAAAGGTGGTGGCCTTGGAATTTGCTGGCCCCAGAAGAAGCCCCAGAAGAGGACAGGTGCTAAAGGGAGGGATCTAGAAAGGATCTAGGAGAATCTAGAAGAATCTATAATGATCTGGACAGCTTGGCTGATCTAGTAGGAGTTTGAGAATCTTCGATATCTTGAAAACCTGATCCTTTTCAAATTCCAAACAGTTTGGGCTTTTCTGGGCCTGCAGACCATACCCTATTCTAGAAAGATGGATTCTAGACGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGACACATCATTGGAATTTCT</pcr_primer_p1>
		<pcr_primer_p2>AGACACTATAGGAGACGGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAGACACATCATTGGAATTTCTGCCTCCTCCTCCGCGTTTTTATGGAAATTATGAATCCAAAAGTTTGAAGTCGTCACAAAGAGCGATGACAGTTTGATGATGTGACAGTAGAATAAGTAGAAACTGTCATTTTGGATTTTTGTCAAAAAACGGTTTTTCGTCGTCTTTTTGATGATGATCTACTTTGCATATATACGCCAGCCGCATAGTATTCGGCCATTTTCGCGCATTTTCCGTCTCCTATAGTGTCT</canonical_amplicon>
		<polymorphic_amplicon>AAGACACATCATTGGAATTTCTGCCTCCTCCTCCGCGTTTTTATGGAAATTATGAATCCAAAAGTTTGAAGTCGTCACAAAGAGCGATGACAGTTTGATGATGTGACAGTAGAATAAGTAGAAACTGTCATTTTGGATTTTTGTCAAAAAACGGTKTTTCGTCGTCTTTTTGATGATGATCTACTTTGCATATATACGCCAGCCGCATAGTATTCGGCCATTTTCGCGCATTTTCCGTCTCCTATAGTGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23811</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>522445</contig_pos>
        <strand></strand>
        <context>gcattgagga[T/C]tcagagataa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TATCTTTCGATAGACACTCCAACTTCCAGTCTATCCAGATGCATTGAGGA</left_flank>
        <right_flank>TCAGAGATAACTAATTTTCAGTTTTTTGTTTGTTTCTCATCTTTTTAAGC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTGAAAATTAGTTATCTCTGAATCCTCAATGCATCTGGATAGACTGGAAGTTGGAGTGTCTATCGAAAGATACCGGTTATCAGTAATTTGTTGGCCAACTTGGCTCGAAATATCAATGTCTTGGTTTTTTGAGTTCATCCATAATCTGATAGTGTTTGTTAGTTTTGTAAAGTATACGAACCATCAACGCCCATTCATTTTCTATCAGGTTTATGTTGTGTGAATATTTGAAAGTGGTTTTCTTTGAGCCATTTTGAAGATCTTCTCGATTTAGGGATGAGTACTCATTCATAAAAGTGTTTTTAGGTATTGATACATTAGGTAGGCATGTTGTTGGTGACAGTGTCATCGGAAGGGTGATTGAAACTCTCTCAGATTATGGATGAACTCAAAAAACCAAGAAATTGATATTTCGAGCCAAGTTGGCCAACAAATTACTGATAACCGGTATCTTTCGATAGACACTCCAACTTCCAGTCTATCCAGATGCATTGAGGATTCAGAGATAACTAATTTTCAGTTTTTTGTTTGTTTCTCATCTTTTTAAGCAAACAATTCAGCTGATCTTCTTTCCGAAATTTTTGTAATTTATCAACAGGATTTTCTCTAAAAATCTAATTTCCCCAAAAAGCGTGATTTTGAGAGTGGAACAATGGTTTTGTGGATGAGAAAAAACGTTTTTTCAGGAAATTCGGTCAGGAAATTTTTCTGAGTCACGCAGTCGACTCCGAATTTTTCGAGGTATCATTTCTCAAGAAGGGCTACAACTTTCATGTTGACACCTTTTCATGAAATTTGACCTAAATAGGTGTTCTAGTGAAACTTCAGGGTGGAACAATGATTATGTGGACTGTATTAGAGATTTCTAGCTGAAAATTTCAGAATATACTTAACAAAACTGGAGCTTCATTTTTGTAGTTGACAACTTTTTCGAAAAATTAGGTCCTGGTGAGATATTTCGATTTATTTCCCACGTAAACCTTTCTAAATAAGCTCCGC</canonical>
            <polymorphic>ACTGAAAATTAGTTATCTCTGAATCCTCAATGCATCTGGATAGACTGGAAGTTGGAGTGTCTATCGAAAGATACCGGTTATCAGTAATTTGTTGGCCAACTTGGCTCGAAATATCAATGTCTTGGTTTTTTGAGTTCATCCATAATCTGATAGTGTTTGTTAGTTTTGTAAAGTATACGAACCATCAACGCCCATTCATTTTCTATCAGGTTTATGTTGTGTGAATATTTGAAAGTGGTTTTCTTTGAGCCATTTTGAAGATCTTCTCGATTTAGGGATGAGTACTCATTCATAAAAGTGTTTTTAGGTATTGATACATTAGGTAGGCATGTTGTTGGTGACAGTGTCATCGGAAGGGTGATTGAAACTCTCTCAGATTATGGATGAACTCAAAAAACCAAGAAATTGATATTTCGAGCCAAGTTGGCCAACAAATTACTGATAACCGGTATCTTTCGATAGACACTCCAACTTCCAGTCTATCCAGATGCATTGAGGAYTCAGAGATAACTAATTTTCAGTTTTTTGTTTGTTTCTCATCTTTTTAAGCAAACAATTCAGCTGATCTTCTTTCCGAAATTTTTGTAATTTATCAACAGGATTTTCTCTAAAAATCTAATTTCCCCAAAAAGCGTGATTTTGAGAGTGGAACAATGGTTTTGTGGATGAGAAAAAACGTTTTTTCAGGAAATTCGGTCAGGAAATTTTTCTGAGTCACGCAGTCGACTCCGAATTTTTCGAGGTATCATTTCTCAAGAAGGGCTACAACTTTCATGTTGACACCTTTTCATGAAATTTGACCTAAATAGGTGTTCTAGTGAAACTTCAGGGTGGAACAATGATTATGTGGACTGTATTAGAGATTTCTAGCTGAAAATTTCAGAATATACTTAACAAAACTGGAGCTTCATTTTTGTAGTTGACAACTTTTTCGAAAAATTAGGTCCTGGTGAGATATTTCGATTTATTTCCCACGTAAACCTTTCTAAATAAGCTCCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 477 21</canonical_bands>
                <polymorphic_bands>979 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACATTAGGTAGGCATGTTGTT</pcr_primer_p1>
		<pcr_primer_p2>CGGAGCTTATTTAGAAAGGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>686</pcr_amplicon_size>
		<canonical_amplicon>ATACATTAGGTAGGCATGTTGTTGGTGACAGTGTCATCGGAAGGGTGATTGAAACTCTCTCAGATTATGGATGAACTCAAAAAACCAAGAAATTGATATTTCGAGCCAAGTTGGCCAACAAATTACTGATAACCGGTATCTTTCGATAGACACTCCAACTTCCAGTCTATCCAGATGCATTGAGGATTCAGAGATAACTAATTTTCAGTTTTTTGTTTGTTTCTCATCTTTTTAAGCAAACAATTCAGCTGATCTTCTTTCCGAAATTTTTGTAATTTATCAACAGGATTTTCTCTAAAAATCTAATTTCCCCAAAAAGCGTGATTTTGAGAGTGGAACAATGGTTTTGTGGATGAGAAAAAACGTTTTTTCAGGAAATTCGGTCAGGAAATTTTTCTGAGTCACGCAGTCGACTCCGAATTTTTCGAGGTATCATTTCTCAAGAAGGGCTACAACTTTCATGTTGACACCTTTTCATGAAATTTGACCTAAATAGGTGTTCTAGTGAAACTTCAGGGTGGAACAATGATTATGTGGACTGTATTAGAGATTTCTAGCTGAAAATTTCAGAATATACTTAACAAAACTGGAGCTTCATTTTTGTAGTTGACAACTTTTTCGAAAAATTAGGTCCTGGTGAGATATTTCGATTTATTTCCCACGTAAACCTTTCTAAATAAGCTCCG</canonical_amplicon>
		<polymorphic_amplicon>ATACATTAGGTAGGCATGTTGTTGGTGACAGTGTCATCGGAAGGGTGATTGAAACTCTCTCAGATTATGGATGAACTCAAAAAACCAAGAAATTGATATTTCGAGCCAAGTTGGCCAACAAATTACTGATAACCGGTATCTTTCGATAGACACTCCAACTTCCAGTCTATCCAGATGCATTGAGGAYTCAGAGATAACTAATTTTCAGTTTTTTGTTTGTTTCTCATCTTTTTAAGCAAACAATTCAGCTGATCTTCTTTCCGAAATTTTTGTAATTTATCAACAGGATTTTCTCTAAAAATCTAATTTCCCCAAAAAGCGTGATTTTGAGAGTGGAACAATGGTTTTGTGGATGAGAAAAAACGTTTTTTCAGGAAATTCGGTCAGGAAATTTTTCTGAGTCACGCAGTCGACTCCGAATTTTTCGAGGTATCATTTCTCAAGAAGGGCTACAACTTTCATGTTGACACCTTTTCATGAAATTTGACCTAAATAGGTGTTCTAGTGAAACTTCAGGGTGGAACAATGATTATGTGGACTGTATTAGAGATTTCTAGCTGAAAATTTCAGAATATACTTAACAAAACTGGAGCTTCATTTTTGTAGTTGACAACTTTTTCGAAAAATTAGGTCCTGGTGAGATATTTCGATTTATTTCCCACGTAAACCTTTCTAAATAAGCTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23812</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>522631</contig_pos>
        <strand></strand>
        <context>acgttttttc[A/C]ggaaattcgg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATTTTGAGAGTGGAACAATGGTTTTGTGGATGAGAAAAAACGTTTTTTC</left_flank>
        <right_flank>GGAAATTCGGTCAGGAAATTTTTCTGAGTCACGCAGTCGACTCCGAATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGCCCATTCATTTTCTATCAGGTTTATGTTGTGTGAATATTTGAAAGTGGTTTTCTTTGAGCCATTTTGAAGATCTTCTCGATTTAGGGATGAGTACTCATTCATAAAAGTGTTTTTAGGTATTGATACATTAGGTAGGCATGTTGTTGGTGACAGTGTCATCGGAAGGGTGATTGAAACTCTCTCAGATTATGGATGAACTCAAAAAACCAAGAAATTGATATTTCGAGCCAAGTTGGCCAACAAATTACTGATAACCGGTATCTTTCGATAGACACTCCAACTTCCAGTCTATCCAGATGCATTGAGGATTCAGAGATAACTAATTTTCAGTTTTTTGTTTGTTTCTCATCTTTTTAAGCAAACAATTCAGCTGATCTTCTTTCCGAAATTTTTGTAATTTATCAACAGGATTTTCTCTAAAAATCTAATTTCCCCAAAAAGCGTGATTTTGAGAGTGGAACAATGGTTTTGTGGATGAGAAAAAACGTTTTTTCAGGAAATTCGGTCAGGAAATTTTTCTGAGTCACGCAGTCGACTCCGAATTTTTCGAGGTATCATTTCTCAAGAAGGGCTACAACTTTCATGTTGACACCTTTTCATGAAATTTGACCTAAATAGGTGTTCTAGTGAAACTTCAGGGTGGAACAATGATTATGTGGACTGTATTAGAGATTTCTAGCTGAAAATTTCAGAATATACTTAACAAAACTGGAGCTTCATTTTTGTAGTTGACAACTTTTTCGAAAAATTAGGTCCTGGTGAGATATTTCGATTTATTTCCCACGTAAACCTTTCTAAATAAGCTCCGCCCATTTTTATCGATTTTGGAATTTTCAAAAATTCCAAAAATTATTCCCAAACGCAAAAGTTGTGGCAATCTCTCCCAGACGTTCACTCATTACACAGACAGGGCCAATATCTTTTGATACAAGTAAAAAGGATTACTGTAGTTTTAATTTTTAAAAATAAATCATTCCCAGATTTCTGCAGTTTCA</canonical>
            <polymorphic>AACGCCCATTCATTTTCTATCAGGTTTATGTTGTGTGAATATTTGAAAGTGGTTTTCTTTGAGCCATTTTGAAGATCTTCTCGATTTAGGGATGAGTACTCATTCATAAAAGTGTTTTTAGGTATTGATACATTAGGTAGGCATGTTGTTGGTGACAGTGTCATCGGAAGGGTGATTGAAACTCTCTCAGATTATGGATGAACTCAAAAAACCAAGAAATTGATATTTCGAGCCAAGTTGGCCAACAAATTACTGATAACCGGTATCTTTCGATAGACACTCCAACTTCCAGTCTATCCAGATGCATTGAGGATTCAGAGATAACTAATTTTCAGTTTTTTGTTTGTTTCTCATCTTTTTAAGCAAACAATTCAGCTGATCTTCTTTCCGAAATTTTTGTAATTTATCAACAGGATTTTCTCTAAAAATCTAATTTCCCCAAAAAGCGTGATTTTGAGAGTGGAACAATGGTTTTGTGGATGAGAAAAAACGTTTTTTCMGGAAATTCGGTCAGGAAATTTTTCTGAGTCACGCAGTCGACTCCGAATTTTTCGAGGTATCATTTCTCAAGAAGGGCTACAACTTTCATGTTGACACCTTTTCATGAAATTTGACCTAAATAGGTGTTCTAGTGAAACTTCAGGGTGGAACAATGATTATGTGGACTGTATTAGAGATTTCTAGCTGAAAATTTCAGAATATACTTAACAAAACTGGAGCTTCATTTTTGTAGTTGACAACTTTTTCGAAAAATTAGGTCCTGGTGAGATATTTCGATTTATTTCCCACGTAAACCTTTCTAAATAAGCTCCGCCCATTTTTATCGATTTTGGAATTTTCAAAAATTCCAAAAATTATTCCCAAACGCAAAAGTTGTGGCAATCTCTCCCAGACGTTCACTCATTACACAGACAGGGCCAATATCTTTTGATACAAGTAAAAAGGATTACTGTAGTTTTAATTTTTAAAAATAAATCATTCCCAGATTTCTGCAGTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACATTAGGTAGGCATGTTGTT</pcr_primer_p1>
		<pcr_primer_p2>CGGAGCTTATTTAGAAAGGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>686</pcr_amplicon_size>
		<canonical_amplicon>ATACATTAGGTAGGCATGTTGTTGGTGACAGTGTCATCGGAAGGGTGATTGAAACTCTCTCAGATTATGGATGAACTCAAAAAACCAAGAAATTGATATTTCGAGCCAAGTTGGCCAACAAATTACTGATAACCGGTATCTTTCGATAGACACTCCAACTTCCAGTCTATCCAGATGCATTGAGGATTCAGAGATAACTAATTTTCAGTTTTTTGTTTGTTTCTCATCTTTTTAAGCAAACAATTCAGCTGATCTTCTTTCCGAAATTTTTGTAATTTATCAACAGGATTTTCTCTAAAAATCTAATTTCCCCAAAAAGCGTGATTTTGAGAGTGGAACAATGGTTTTGTGGATGAGAAAAAACGTTTTTTCAGGAAATTCGGTCAGGAAATTTTTCTGAGTCACGCAGTCGACTCCGAATTTTTCGAGGTATCATTTCTCAAGAAGGGCTACAACTTTCATGTTGACACCTTTTCATGAAATTTGACCTAAATAGGTGTTCTAGTGAAACTTCAGGGTGGAACAATGATTATGTGGACTGTATTAGAGATTTCTAGCTGAAAATTTCAGAATATACTTAACAAAACTGGAGCTTCATTTTTGTAGTTGACAACTTTTTCGAAAAATTAGGTCCTGGTGAGATATTTCGATTTATTTCCCACGTAAACCTTTCTAAATAAGCTCCG</canonical_amplicon>
		<polymorphic_amplicon>ATACATTAGGTAGGCATGTTGTTGGTGACAGTGTCATCGGAAGGGTGATTGAAACTCTCTCAGATTATGGATGAACTCAAAAAACCAAGAAATTGATATTTCGAGCCAAGTTGGCCAACAAATTACTGATAACCGGTATCTTTCGATAGACACTCCAACTTCCAGTCTATCCAGATGCATTGAGGATTCAGAGATAACTAATTTTCAGTTTTTTGTTTGTTTCTCATCTTTTTAAGCAAACAATTCAGCTGATCTTCTTTCCGAAATTTTTGTAATTTATCAACAGGATTTTCTCTAAAAATCTAATTTCCCCAAAAAGCGTGATTTTGAGAGTGGAACAATGGTTTTGTGGATGAGAAAAAACGTTTTTTCMGGAAATTCGGTCAGGAAATTTTTCTGAGTCACGCAGTCGACTCCGAATTTTTCGAGGTATCATTTCTCAAGAAGGGCTACAACTTTCATGTTGACACCTTTTCATGAAATTTGACCTAAATAGGTGTTCTAGTGAAACTTCAGGGTGGAACAATGATTATGTGGACTGTATTAGAGATTTCTAGCTGAAAATTTCAGAATATACTTAACAAAACTGGAGCTTCATTTTTGTAGTTGACAACTTTTTCGAAAAATTAGGTCCTGGTGAGATATTTCGATTTATTTCCCACGTAAACCTTTCTAAATAAGCTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23813</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>522691</contig_pos>
        <strand></strand>
        <context>tttcgaggta[T/C]catttctcaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTCAGGAAATTTTTCTGAGTCACGCAGTCGACTCCGAATTTTTCGAGGTA</left_flank>
        <right_flank>CATTTCTCAAGAAGGGCTACAACTTTCATGTTGACACCTTTTCATGAAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCCATTTTGAAGATCTTCTCGATTTAGGGATGAGTACTCATTCATAAAAGTGTTTTTAGGTATTGATACATTAGGTAGGCATGTTGTTGGTGACAGTGTCATCGGAAGGGTGATTGAAACTCTCTCAGATTATGGATGAACTCAAAAAACCAAGAAATTGATATTTCGAGCCAAGTTGGCCAACAAATTACTGATAACCGGTATCTTTCGATAGACACTCCAACTTCCAGTCTATCCAGATGCATTGAGGATTCAGAGATAACTAATTTTCAGTTTTTTGTTTGTTTCTCATCTTTTTAAGCAAACAATTCAGCTGATCTTCTTTCCGAAATTTTTGTAATTTATCAACAGGATTTTCTCTAAAAATCTAATTTCCCCAAAAAGCGTGATTTTGAGAGTGGAACAATGGTTTTGTGGATGAGAAAAAACGTTTTTTCAGGAAATTCGGTCAGGAAATTTTTCTGAGTCACGCAGTCGACTCCGAATTTTTCGAGGTATCATTTCTCAAGAAGGGCTACAACTTTCATGTTGACACCTTTTCATGAAATTTGACCTAAATAGGTGTTCTAGTGAAACTTCAGGGTGGAACAATGATTATGTGGACTGTATTAGAGATTTCTAGCTGAAAATTTCAGAATATACTTAACAAAACTGGAGCTTCATTTTTGTAGTTGACAACTTTTTCGAAAAATTAGGTCCTGGTGAGATATTTCGATTTATTTCCCACGTAAACCTTTCTAAATAAGCTCCGCCCATTTTTATCGATTTTGGAATTTTCAAAAATTCCAAAAATTATTCCCAAACGCAAAAGTTGTGGCAATCTCTCCCAGACGTTCACTCATTACACAGACAGGGCCAATATCTTTTGATACAAGTAAAAAGGATTACTGTAGTTTTAATTTTTAAAAATAAATCATTCCCAGATTTCTGCAGTTTCACTAATGACGGACGGTTTTGTGTTGATTGTGTTCTACGTTGCCACGTGTGTTTGTAAGTAT</canonical>
            <polymorphic>GAGCCATTTTGAAGATCTTCTCGATTTAGGGATGAGTACTCATTCATAAAAGTGTTTTTAGGTATTGATACATTAGGTAGGCATGTTGTTGGTGACAGTGTCATCGGAAGGGTGATTGAAACTCTCTCAGATTATGGATGAACTCAAAAAACCAAGAAATTGATATTTCGAGCCAAGTTGGCCAACAAATTACTGATAACCGGTATCTTTCGATAGACACTCCAACTTCCAGTCTATCCAGATGCATTGAGGATTCAGAGATAACTAATTTTCAGTTTTTTGTTTGTTTCTCATCTTTTTAAGCAAACAATTCAGCTGATCTTCTTTCCGAAATTTTTGTAATTTATCAACAGGATTTTCTCTAAAAATCTAATTTCCCCAAAAAGCGTGATTTTGAGAGTGGAACAATGGTTTTGTGGATGAGAAAAAACGTTTTTTCAGGAAATTCGGTCAGGAAATTTTTCTGAGTCACGCAGTCGACTCCGAATTTTTCGAGGTAYCATTTCTCAAGAAGGGCTACAACTTTCATGTTGACACCTTTTCATGAAATTTGACCTAAATAGGTGTTCTAGTGAAACTTCAGGGTGGAACAATGATTATGTGGACTGTATTAGAGATTTCTAGCTGAAAATTTCAGAATATACTTAACAAAACTGGAGCTTCATTTTTGTAGTTGACAACTTTTTCGAAAAATTAGGTCCTGGTGAGATATTTCGATTTATTTCCCACGTAAACCTTTCTAAATAAGCTCCGCCCATTTTTATCGATTTTGGAATTTTCAAAAATTCCAAAAATTATTCCCAAACGCAAAAGTTGTGGCAATCTCTCCCAGACGTTCACTCATTACACAGACAGGGCCAATATCTTTTGATACAAGTAAAAAGGATTACTGTAGTTTTAATTTTTAAAAATAAATCATTCCCAGATTTCTGCAGTTTCACTAATGACGGACGGTTTTGTGTTGATTGTGTTCTACGTTGCCACGTGTGTTTGTAAGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACATTAGGTAGGCATGTTGTT</pcr_primer_p1>
		<pcr_primer_p2>CGGAGCTTATTTAGAAAGGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>686</pcr_amplicon_size>
		<canonical_amplicon>ATACATTAGGTAGGCATGTTGTTGGTGACAGTGTCATCGGAAGGGTGATTGAAACTCTCTCAGATTATGGATGAACTCAAAAAACCAAGAAATTGATATTTCGAGCCAAGTTGGCCAACAAATTACTGATAACCGGTATCTTTCGATAGACACTCCAACTTCCAGTCTATCCAGATGCATTGAGGATTCAGAGATAACTAATTTTCAGTTTTTTGTTTGTTTCTCATCTTTTTAAGCAAACAATTCAGCTGATCTTCTTTCCGAAATTTTTGTAATTTATCAACAGGATTTTCTCTAAAAATCTAATTTCCCCAAAAAGCGTGATTTTGAGAGTGGAACAATGGTTTTGTGGATGAGAAAAAACGTTTTTTCAGGAAATTCGGTCAGGAAATTTTTCTGAGTCACGCAGTCGACTCCGAATTTTTCGAGGTATCATTTCTCAAGAAGGGCTACAACTTTCATGTTGACACCTTTTCATGAAATTTGACCTAAATAGGTGTTCTAGTGAAACTTCAGGGTGGAACAATGATTATGTGGACTGTATTAGAGATTTCTAGCTGAAAATTTCAGAATATACTTAACAAAACTGGAGCTTCATTTTTGTAGTTGACAACTTTTTCGAAAAATTAGGTCCTGGTGAGATATTTCGATTTATTTCCCACGTAAACCTTTCTAAATAAGCTCCG</canonical_amplicon>
		<polymorphic_amplicon>ATACATTAGGTAGGCATGTTGTTGGTGACAGTGTCATCGGAAGGGTGATTGAAACTCTCTCAGATTATGGATGAACTCAAAAAACCAAGAAATTGATATTTCGAGCCAAGTTGGCCAACAAATTACTGATAACCGGTATCTTTCGATAGACACTCCAACTTCCAGTCTATCCAGATGCATTGAGGATTCAGAGATAACTAATTTTCAGTTTTTTGTTTGTTTCTCATCTTTTTAAGCAAACAATTCAGCTGATCTTCTTTCCGAAATTTTTGTAATTTATCAACAGGATTTTCTCTAAAAATCTAATTTCCCCAAAAAGCGTGATTTTGAGAGTGGAACAATGGTTTTGTGGATGAGAAAAAACGTTTTTTCAGGAAATTCGGTCAGGAAATTTTTCTGAGTCACGCAGTCGACTCCGAATTTTTCGAGGTAYCATTTCTCAAGAAGGGCTACAACTTTCATGTTGACACCTTTTCATGAAATTTGACCTAAATAGGTGTTCTAGTGAAACTTCAGGGTGGAACAATGATTATGTGGACTGTATTAGAGATTTCTAGCTGAAAATTTCAGAATATACTTAACAAAACTGGAGCTTCATTTTTGTAGTTGACAACTTTTTCGAAAAATTAGGTCCTGGTGAGATATTTCGATTTATTTCCCACGTAAACCTTTCTAAATAAGCTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23814</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>522706</contig_pos>
        <strand></strand>
        <context>tctcaagaag[G/A]gctacaactt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGAGTCACGCAGTCGACTCCGAATTTTTCGAGGTATCATTTCTCAAGAAG</left_flank>
        <right_flank>GCTACAACTTTCATGTTGACACCTTTTCATGAAATTTGACCTAAATAGGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTCTCGATTTAGGGATGAGTACTCATTCATAAAAGTGTTTTTAGGTATTGATACATTAGGTAGGCATGTTGTTGGTGACAGTGTCATCGGAAGGGTGATTGAAACTCTCTCAGATTATGGATGAACTCAAAAAACCAAGAAATTGATATTTCGAGCCAAGTTGGCCAACAAATTACTGATAACCGGTATCTTTCGATAGACACTCCAACTTCCAGTCTATCCAGATGCATTGAGGATTCAGAGATAACTAATTTTCAGTTTTTTGTTTGTTTCTCATCTTTTTAAGCAAACAATTCAGCTGATCTTCTTTCCGAAATTTTTGTAATTTATCAACAGGATTTTCTCTAAAAATCTAATTTCCCCAAAAAGCGTGATTTTGAGAGTGGAACAATGGTTTTGTGGATGAGAAAAAACGTTTTTTCAGGAAATTCGGTCAGGAAATTTTTCTGAGTCACGCAGTCGACTCCGAATTTTTCGAGGTATCATTTCTCAAGAAGGGCTACAACTTTCATGTTGACACCTTTTCATGAAATTTGACCTAAATAGGTGTTCTAGTGAAACTTCAGGGTGGAACAATGATTATGTGGACTGTATTAGAGATTTCTAGCTGAAAATTTCAGAATATACTTAACAAAACTGGAGCTTCATTTTTGTAGTTGACAACTTTTTCGAAAAATTAGGTCCTGGTGAGATATTTCGATTTATTTCCCACGTAAACCTTTCTAAATAAGCTCCGCCCATTTTTATCGATTTTGGAATTTTCAAAAATTCCAAAAATTATTCCCAAACGCAAAAGTTGTGGCAATCTCTCCCAGACGTTCACTCATTACACAGACAGGGCCAATATCTTTTGATACAAGTAAAAAGGATTACTGTAGTTTTAATTTTTAAAAATAAATCATTCCCAGATTTCTGCAGTTTCACTAATGACGGACGGTTTTGTGTTGATTGTGTTCTACGTTGCCACGTGTGTTTGTAAGTATCGGGAAATGCGCAAA</canonical>
            <polymorphic>TCTTCTCGATTTAGGGATGAGTACTCATTCATAAAAGTGTTTTTAGGTATTGATACATTAGGTAGGCATGTTGTTGGTGACAGTGTCATCGGAAGGGTGATTGAAACTCTCTCAGATTATGGATGAACTCAAAAAACCAAGAAATTGATATTTCGAGCCAAGTTGGCCAACAAATTACTGATAACCGGTATCTTTCGATAGACACTCCAACTTCCAGTCTATCCAGATGCATTGAGGATTCAGAGATAACTAATTTTCAGTTTTTTGTTTGTTTCTCATCTTTTTAAGCAAACAATTCAGCTGATCTTCTTTCCGAAATTTTTGTAATTTATCAACAGGATTTTCTCTAAAAATCTAATTTCCCCAAAAAGCGTGATTTTGAGAGTGGAACAATGGTTTTGTGGATGAGAAAAAACGTTTTTTCAGGAAATTCGGTCAGGAAATTTTTCTGAGTCACGCAGTCGACTCCGAATTTTTCGAGGTATCATTTCTCAAGAAGRGCTACAACTTTCATGTTGACACCTTTTCATGAAATTTGACCTAAATAGGTGTTCTAGTGAAACTTCAGGGTGGAACAATGATTATGTGGACTGTATTAGAGATTTCTAGCTGAAAATTTCAGAATATACTTAACAAAACTGGAGCTTCATTTTTGTAGTTGACAACTTTTTCGAAAAATTAGGTCCTGGTGAGATATTTCGATTTATTTCCCACGTAAACCTTTCTAAATAAGCTCCGCCCATTTTTATCGATTTTGGAATTTTCAAAAATTCCAAAAATTATTCCCAAACGCAAAAGTTGTGGCAATCTCTCCCAGACGTTCACTCATTACACAGACAGGGCCAATATCTTTTGATACAAGTAAAAAGGATTACTGTAGTTTTAATTTTTAAAAATAAATCATTCCCAGATTTCTGCAGTTTCACTAATGACGGACGGTTTTGTGTTGATTGTGTTCTACGTTGCCACGTGTGTTTGTAAGTATCGGGAAATGCGCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>201 158 157 134 109 108 89 35 9</canonical_bands>
                <polymorphic_bands>309 158 157 134 109 89 35 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACATTAGGTAGGCATGTTGTT</pcr_primer_p1>
		<pcr_primer_p2>CGGAGCTTATTTAGAAAGGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>686</pcr_amplicon_size>
		<canonical_amplicon>ATACATTAGGTAGGCATGTTGTTGGTGACAGTGTCATCGGAAGGGTGATTGAAACTCTCTCAGATTATGGATGAACTCAAAAAACCAAGAAATTGATATTTCGAGCCAAGTTGGCCAACAAATTACTGATAACCGGTATCTTTCGATAGACACTCCAACTTCCAGTCTATCCAGATGCATTGAGGATTCAGAGATAACTAATTTTCAGTTTTTTGTTTGTTTCTCATCTTTTTAAGCAAACAATTCAGCTGATCTTCTTTCCGAAATTTTTGTAATTTATCAACAGGATTTTCTCTAAAAATCTAATTTCCCCAAAAAGCGTGATTTTGAGAGTGGAACAATGGTTTTGTGGATGAGAAAAAACGTTTTTTCAGGAAATTCGGTCAGGAAATTTTTCTGAGTCACGCAGTCGACTCCGAATTTTTCGAGGTATCATTTCTCAAGAAGGGCTACAACTTTCATGTTGACACCTTTTCATGAAATTTGACCTAAATAGGTGTTCTAGTGAAACTTCAGGGTGGAACAATGATTATGTGGACTGTATTAGAGATTTCTAGCTGAAAATTTCAGAATATACTTAACAAAACTGGAGCTTCATTTTTGTAGTTGACAACTTTTTCGAAAAATTAGGTCCTGGTGAGATATTTCGATTTATTTCCCACGTAAACCTTTCTAAATAAGCTCCG</canonical_amplicon>
		<polymorphic_amplicon>ATACATTAGGTAGGCATGTTGTTGGTGACAGTGTCATCGGAAGGGTGATTGAAACTCTCTCAGATTATGGATGAACTCAAAAAACCAAGAAATTGATATTTCGAGCCAAGTTGGCCAACAAATTACTGATAACCGGTATCTTTCGATAGACACTCCAACTTCCAGTCTATCCAGATGCATTGAGGATTCAGAGATAACTAATTTTCAGTTTTTTGTTTGTTTCTCATCTTTTTAAGCAAACAATTCAGCTGATCTTCTTTCCGAAATTTTTGTAATTTATCAACAGGATTTTCTCTAAAAATCTAATTTCCCCAAAAAGCGTGATTTTGAGAGTGGAACAATGGTTTTGTGGATGAGAAAAAACGTTTTTTCAGGAAATTCGGTCAGGAAATTTTTCTGAGTCACGCAGTCGACTCCGAATTTTTCGAGGTATCATTTCTCAAGAAGRGCTACAACTTTCATGTTGACACCTTTTCATGAAATTTGACCTAAATAGGTGTTCTAGTGAAACTTCAGGGTGGAACAATGATTATGTGGACTGTATTAGAGATTTCTAGCTGAAAATTTCAGAATATACTTAACAAAACTGGAGCTTCATTTTTGTAGTTGACAACTTTTTCGAAAAATTAGGTCCTGGTGAGATATTTCGATTTATTTCCCACGTAAACCTTTCTAAATAAGCTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23815</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>522741</contig_pos>
        <strand></strand>
        <context>tttcatgaaa[T/C]ttgacctaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCATTTCTCAAGAAGGGCTACAACTTTCATGTTGACACCTTTTCATGAAA</left_flank>
        <right_flank>TTGACCTAAATAGGTGTTCTAGTGAAACTTCAGGGTGGAACAATGATTAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTGTTTTTAGGTATTGATACATTAGGTAGGCATGTTGTTGGTGACAGTGTCATCGGAAGGGTGATTGAAACTCTCTCAGATTATGGATGAACTCAAAAAACCAAGAAATTGATATTTCGAGCCAAGTTGGCCAACAAATTACTGATAACCGGTATCTTTCGATAGACACTCCAACTTCCAGTCTATCCAGATGCATTGAGGATTCAGAGATAACTAATTTTCAGTTTTTTGTTTGTTTCTCATCTTTTTAAGCAAACAATTCAGCTGATCTTCTTTCCGAAATTTTTGTAATTTATCAACAGGATTTTCTCTAAAAATCTAATTTCCCCAAAAAGCGTGATTTTGAGAGTGGAACAATGGTTTTGTGGATGAGAAAAAACGTTTTTTCAGGAAATTCGGTCAGGAAATTTTTCTGAGTCACGCAGTCGACTCCGAATTTTTCGAGGTATCATTTCTCAAGAAGGGCTACAACTTTCATGTTGACACCTTTTCATGAAATTTGACCTAAATAGGTGTTCTAGTGAAACTTCAGGGTGGAACAATGATTATGTGGACTGTATTAGAGATTTCTAGCTGAAAATTTCAGAATATACTTAACAAAACTGGAGCTTCATTTTTGTAGTTGACAACTTTTTCGAAAAATTAGGTCCTGGTGAGATATTTCGATTTATTTCCCACGTAAACCTTTCTAAATAAGCTCCGCCCATTTTTATCGATTTTGGAATTTTCAAAAATTCCAAAAATTATTCCCAAACGCAAAAGTTGTGGCAATCTCTCCCAGACGTTCACTCATTACACAGACAGGGCCAATATCTTTTGATACAAGTAAAAAGGATTACTGTAGTTTTAATTTTTAAAAATAAATCATTCCCAGATTTCTGCAGTTTCACTAATGACGGACGGTTTTGTGTTGATTGTGTTCTACGTTGCCACGTGTGTTTGTAAGTATCGGGAAATGCGCAAAGGCACATTTCCGGTGCCTTGGCGTCTTTCTAGTGT</canonical>
            <polymorphic>AGTGTTTTTAGGTATTGATACATTAGGTAGGCATGTTGTTGGTGACAGTGTCATCGGAAGGGTGATTGAAACTCTCTCAGATTATGGATGAACTCAAAAAACCAAGAAATTGATATTTCGAGCCAAGTTGGCCAACAAATTACTGATAACCGGTATCTTTCGATAGACACTCCAACTTCCAGTCTATCCAGATGCATTGAGGATTCAGAGATAACTAATTTTCAGTTTTTTGTTTGTTTCTCATCTTTTTAAGCAAACAATTCAGCTGATCTTCTTTCCGAAATTTTTGTAATTTATCAACAGGATTTTCTCTAAAAATCTAATTTCCCCAAAAAGCGTGATTTTGAGAGTGGAACAATGGTTTTGTGGATGAGAAAAAACGTTTTTTCAGGAAATTCGGTCAGGAAATTTTTCTGAGTCACGCAGTCGACTCCGAATTTTTCGAGGTATCATTTCTCAAGAAGGGCTACAACTTTCATGTTGACACCTTTTCATGAAAYTTGACCTAAATAGGTGTTCTAGTGAAACTTCAGGGTGGAACAATGATTATGTGGACTGTATTAGAGATTTCTAGCTGAAAATTTCAGAATATACTTAACAAAACTGGAGCTTCATTTTTGTAGTTGACAACTTTTTCGAAAAATTAGGTCCTGGTGAGATATTTCGATTTATTTCCCACGTAAACCTTTCTAAATAAGCTCCGCCCATTTTTATCGATTTTGGAATTTTCAAAAATTCCAAAAATTATTCCCAAACGCAAAAGTTGTGGCAATCTCTCCCAGACGTTCACTCATTACACAGACAGGGCCAATATCTTTTGATACAAGTAAAAAGGATTACTGTAGTTTTAATTTTTAAAAATAAATCATTCCCAGATTTCTGCAGTTTCACTAATGACGGACGGTTTTGTGTTGATTGTGTTCTACGTTGCCACGTGTGTTTGTAAGTATCGGGAAATGCGCAAAGGCACATTTCCGGTGCCTTGGCGTCTTTCTAGTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>281 267 144 112 82 62 29 13 10</canonical_bands>
                <polymorphic_bands>281 267 144 144 112 29 13 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>151 107 107 82 82 79 72 62 62 42 31 30 29 23 13 10 9 9</canonical_bands>
                <polymorphic_bands>151 144 107 107 82 79 72 62 42 31 30 29 23 13 10 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACATTAGGTAGGCATGTTGTT</pcr_primer_p1>
		<pcr_primer_p2>CGGAGCTTATTTAGAAAGGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>686</pcr_amplicon_size>
		<canonical_amplicon>ATACATTAGGTAGGCATGTTGTTGGTGACAGTGTCATCGGAAGGGTGATTGAAACTCTCTCAGATTATGGATGAACTCAAAAAACCAAGAAATTGATATTTCGAGCCAAGTTGGCCAACAAATTACTGATAACCGGTATCTTTCGATAGACACTCCAACTTCCAGTCTATCCAGATGCATTGAGGATTCAGAGATAACTAATTTTCAGTTTTTTGTTTGTTTCTCATCTTTTTAAGCAAACAATTCAGCTGATCTTCTTTCCGAAATTTTTGTAATTTATCAACAGGATTTTCTCTAAAAATCTAATTTCCCCAAAAAGCGTGATTTTGAGAGTGGAACAATGGTTTTGTGGATGAGAAAAAACGTTTTTTCAGGAAATTCGGTCAGGAAATTTTTCTGAGTCACGCAGTCGACTCCGAATTTTTCGAGGTATCATTTCTCAAGAAGGGCTACAACTTTCATGTTGACACCTTTTCATGAAATTTGACCTAAATAGGTGTTCTAGTGAAACTTCAGGGTGGAACAATGATTATGTGGACTGTATTAGAGATTTCTAGCTGAAAATTTCAGAATATACTTAACAAAACTGGAGCTTCATTTTTGTAGTTGACAACTTTTTCGAAAAATTAGGTCCTGGTGAGATATTTCGATTTATTTCCCACGTAAACCTTTCTAAATAAGCTCCG</canonical_amplicon>
		<polymorphic_amplicon>ATACATTAGGTAGGCATGTTGTTGGTGACAGTGTCATCGGAAGGGTGATTGAAACTCTCTCAGATTATGGATGAACTCAAAAAACCAAGAAATTGATATTTCGAGCCAAGTTGGCCAACAAATTACTGATAACCGGTATCTTTCGATAGACACTCCAACTTCCAGTCTATCCAGATGCATTGAGGATTCAGAGATAACTAATTTTCAGTTTTTTGTTTGTTTCTCATCTTTTTAAGCAAACAATTCAGCTGATCTTCTTTCCGAAATTTTTGTAATTTATCAACAGGATTTTCTCTAAAAATCTAATTTCCCCAAAAAGCGTGATTTTGAGAGTGGAACAATGGTTTTGTGGATGAGAAAAAACGTTTTTTCAGGAAATTCGGTCAGGAAATTTTTCTGAGTCACGCAGTCGACTCCGAATTTTTCGAGGTATCATTTCTCAAGAAGGGCTACAACTTTCATGTTGACACCTTTTCATGAAAYTTGACCTAAATAGGTGTTCTAGTGAAACTTCAGGGTGGAACAATGATTATGTGGACTGTATTAGAGATTTCTAGCTGAAAATTTCAGAATATACTTAACAAAACTGGAGCTTCATTTTTGTAGTTGACAACTTTTTCGAAAAATTAGGTCCTGGTGAGATATTTCGATTTATTTCCCACGTAAACCTTTCTAAATAAGCTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23816</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>522896</contig_pos>
        <strand></strand>
        <context>taggtcctgg[T/G]gagatatttc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TGGAGCTTCATTTTTGTAGTTGACAACTTTTTCGAAAAATTAGGTCCTGG</left_flank>
        <right_flank>GAGATATTTCGATTTATTTCCCACGTAAACCTTTCTAAATAAGCTCCGCC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTTCGATAGACACTCCAACTTCCAGTCTATCCAGATGCATTGAGGATTCAGAGATAACTAATTTTCAGTTTTTTGTTTGTTTCTCATCTTTTTAAGCAAACAATTCAGCTGATCTTCTTTCCGAAATTTTTGTAATTTATCAACAGGATTTTCTCTAAAAATCTAATTTCCCCAAAAAGCGTGATTTTGAGAGTGGAACAATGGTTTTGTGGATGAGAAAAAACGTTTTTTCAGGAAATTCGGTCAGGAAATTTTTCTGAGTCACGCAGTCGACTCCGAATTTTTCGAGGTATCATTTCTCAAGAAGGGCTACAACTTTCATGTTGACACCTTTTCATGAAATTTGACCTAAATAGGTGTTCTAGTGAAACTTCAGGGTGGAACAATGATTATGTGGACTGTATTAGAGATTTCTAGCTGAAAATTTCAGAATATACTTAACAAAACTGGAGCTTCATTTTTGTAGTTGACAACTTTTTCGAAAAATTAGGTCCTGGTGAGATATTTCGATTTATTTCCCACGTAAACCTTTCTAAATAAGCTCCGCCCATTTTTATCGATTTTGGAATTTTCAAAAATTCCAAAAATTATTCCCAAACGCAAAAGTTGTGGCAATCTCTCCCAGACGTTCACTCATTACACAGACAGGGCCAATATCTTTTGATACAAGTAAAAAGGATTACTGTAGTTTTAATTTTTAAAAATAAATCATTCCCAGATTTCTGCAGTTTCACTAATGACGGACGGTTTTGTGTTGATTGTGTTCTACGTTGCCACGTGTGTTTGTAAGTATCGGGAAATGCGCAAAGGCACATTTCCGGTGCCTTGGCGTCTTTCTAGTGTTTGGCAACAAAAATGCGTCAAGGCACCGGAAATGCACCAAGACTCTAGAAGGGCGCAAAACACGGTACCTTAGTGTCTTTCTAGAGCTTGGCACGAAAAAAAAGCACCGGAGATGCGCAAAGGATCCGGAAAAGCGCAAATCACGGGACCTTGGC</canonical>
            <polymorphic>TCTTTCGATAGACACTCCAACTTCCAGTCTATCCAGATGCATTGAGGATTCAGAGATAACTAATTTTCAGTTTTTTGTTTGTTTCTCATCTTTTTAAGCAAACAATTCAGCTGATCTTCTTTCCGAAATTTTTGTAATTTATCAACAGGATTTTCTCTAAAAATCTAATTTCCCCAAAAAGCGTGATTTTGAGAGTGGAACAATGGTTTTGTGGATGAGAAAAAACGTTTTTTCAGGAAATTCGGTCAGGAAATTTTTCTGAGTCACGCAGTCGACTCCGAATTTTTCGAGGTATCATTTCTCAAGAAGGGCTACAACTTTCATGTTGACACCTTTTCATGAAATTTGACCTAAATAGGTGTTCTAGTGAAACTTCAGGGTGGAACAATGATTATGTGGACTGTATTAGAGATTTCTAGCTGAAAATTTCAGAATATACTTAACAAAACTGGAGCTTCATTTTTGTAGTTGACAACTTTTTCGAAAAATTAGGTCCTGGKGAGATATTTCGATTTATTTCCCACGTAAACCTTTCTAAATAAGCTCCGCCCATTTTTATCGATTTTGGAATTTTCAAAAATTCCAAAAATTATTCCCAAACGCAAAAGTTGTGGCAATCTCTCCCAGACGTTCACTCATTACACAGACAGGGCCAATATCTTTTGATACAAGTAAAAAGGATTACTGTAGTTTTAATTTTTAAAAATAAATCATTCCCAGATTTCTGCAGTTTCACTAATGACGGACGGTTTTGTGTTGATTGTGTTCTACGTTGCCACGTGTGTTTGTAAGTATCGGGAAATGCGCAAAGGCACATTTCCGGTGCCTTGGCGTCTTTCTAGTGTTTGGCAACAAAAATGCGTCAAGGCACCGGAAATGCACCAAGACTCTAGAAGGGCGCAAAACACGGTACCTTAGTGTCTTTCTAGAGCTTGGCACGAAAAAAAAGCACCGGAGATGCGCAAAGGATCCGGAAAAGCGCAAATCACGGGACCTTGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>171 103 92 90 65 53 37 30 30 26 26 22 21 21 19 18 16 16 14 13 13 13 13 12 12 11 11 9 9 8 4 2</canonical_bands>
                <polymorphic_bands>171 125 92 90 65 53 37 30 30 26 26 21 21 19 18 16 16 14 13 13 13 13 12 12 11 11 9 9 8 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACATTAGGTAGGCATGTTGTT</pcr_primer_p1>
		<pcr_primer_p2>AATTCCAAAATCGATAAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>710</pcr_amplicon_size>
		<canonical_amplicon>GTGAGATATTTCGATTTATTTCCCACGTAAACCTTTCTAAATAAGCTCCGCCCATTTTTATCGATTTTGGAATT</canonical_amplicon>
		<polymorphic_amplicon>GKGAGATATTTCGATTTATTTCCCACGTAAACCTTTCTAAATAAGCTCCGCCCATTTTTATCGATTTTGGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23817</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>537237</contig_pos>
        <strand>+</strand>
        <context>CCTCGGTGGG[A/G]TTTAGGCCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGGAGCACATTCTAGACGAGTTTTTGGCAGCTAGAAGACCTCGGTGGG</left_flank>
        <right_flank>TTTAGGCCAATGAAATCTGAATTTCGATACCGTAACCACTCAATTAGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCATTTTTGCGTCAAAAATTAATATTTTTATTGTTATTGACTCCCCTTTTTTCCAGTCATATATAGCAATGCAAATTCTAGCTCATTTTTTCCCTTTTTTCGGTTTTTCTCTATGGCAGAGCCAACACCTCCCACTCGGCACGTACACACACCTAGCATTTTTTTGCCGTCTTCTAATCTCTCCAGAATCTCCATGGAGACGTCGTGCGGCCCTTAATCCGCACTCCTCCGGTGTCGCCGATTTGTTGTTTTTCTCTGGATAAAATACGGATTCTCTTAATCTGCCTCCCCCCACTCCAAAACATTTTTTAATTCTATTTATTCTCTGAATACATTTTTTGGAGTCTTCTGATTCCCAAAAACCCAAAAAATGGCCGAAGAGGCAGCTGAAAACGTGCCAGTCCCCCCTCCATTGCCGTGGAATGGGAATTTGCACCTGATCCGATATTTGGAGCACATTCTAGACGAGTTTTTGGCAGCTAGAAGACCTCGGTGGGTTTTAGGCCAATGAAATCTGAATTTCGATACCGTAACCACTCAATTAGAATGCCCCTTCCCCTTTTACCTCTCCCTCCTTGGGAGATCCCATAACTTTGACCCTAATTATCTTGGTTCCTGGGAAAGATATCAAAAAGTGGTTAACTACGAAAATGTTGCTGATAATATGAGGAACATTTTGTTAGTGAACCACGTTTTGATATCATTTACAGGGATTGAGATAATTAGGCTTAAAGGGATTACCCCCCCCCCCCCCCCCTTGCCTCTCACCTCTCGGGAGGTCCGATAATTTGGACCTAACTTATCTCGGCTTCTGTGAAAGATACCAAAAAGTAGTTAACTAACAAAATGATGTTTATATTATGAGGAACAGTTTGGCTGTTGACCATTTTTCGATAACTTTTCCAGGAACTGAGATAATTAGGATTAAAGGGATAGGGTCATTTATCAAACTGAACTTGTTAACTGAAACCCGGTCTCTCGTAGCTTGTGAAAACAAA</canonical>
            <polymorphic>AGCCATTTTTGCGTCAAAAATTAATATTTTTATTGTTATTGACTCCCCTTTTTTCCAGTCATATATAGCAATGCAAATTCTAGCTCATTTTTTCCCTTTTTTCGGTTTTTCTCTATGGCAGAGCCAACACCTCCCACTCGGCACGTACACACACCTAGCATTTTTTTGCCGTCTTCTAATCTCTCCAGAATCTCCATGGAGACGTCGTGCGGCCCTTAATCCGCACTCCTCCGGTGTCGCCGATTTGTTGTTTTTCTCTGGATAAAATACGGATTCTCTTAATCTGCCTCCCCCCACTCCAAAACATTTTTTAATTCTATTTATTCTCTGAATACATTTTTTGGAGTCTTCTGATTCCCAAAAACCCAAAAAATGGCCGAAGAGGCAGCTGAAAACGTGCCAGTCCCCCCTCCATTGCCGTGGAATGGGAATTTGCACCTGATCCGATATTTGGAGCACATTCTAGACGAGTTTTTGGCAGCTAGAAGACCTCGGTGGGRTTTAGGCCAATGAAATCTGAATTTCGATACCGTAACCACTCAATTAGAATGCCCCTTCCCCTTTTACCTCTCCCTCCTTGGGAGATCCCATAACTTTGACCCTAATTATCTTGGTTCCTGGGAAAGATATCAAAAAGTGGTTAACTACGAAAATGTTGCTGATAATATGAGGAACATTTTGTTAGTGAACCACGTTTTGATATCATTTACAGGGATTGAGATAATTAGGCTTAAAGGGATTACCCCCCCCCCCCCCCCCTTGCCTCTCACCTCTCGGGAGGTCCGATAATTTGGACCTAACTTATCTCGGCTTCTGTGAAAGATACCAAAAAGTAGTTAACTAACAAAATGATGTTTATATTATGAGGAACAGTTTGGCTGTTGACCATTTTTCGATAACTTTTCCAGGAACTGAGATAATTAGGATTAAAGGGATAGGGTCATTTATCAAACTGAACTTGTTAACTGAAACCCGGTCTCTCGTAGCTTGTGAAAACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCTTCTGATTCCCAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CAAGGAGGGAGAGGTAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>AGTCTTCTGATTCCCAAAAACCCAAAAAATGGCCGAAGAGGCAGCTGAAAACGTGCCAGTCCCCCCTCCATTGCCGTGGAATGGGAATTTGCACCTGATCCGATATTTGGAGCACATTCTAGACGAGTTTTTGGCAGCTAGAAGACCTCGGTGGGTTTTAGGCCAATGAAATCTGAATTTCGATACCGTAACCACTCAATTAGAATGCCCCTTCCCCTTTTACCTCTCCCTCCTTG</canonical_amplicon>
		<polymorphic_amplicon>AGTCTTCTGATTCCCAAAAACCCAAAAAATGGCCGAAGAGGCAGCTGAAAACGTGCCAGTCCCCCCTCCATTGCCGTGGAATGGGAATTTGCACCTGATCCGATATTTGGAGCACATTCTAGACGAGTTTTTGGCAGCTAGAAGACCTCGGTGGGRTTTAGGCCAATGAAATCTGAATTTCGATACCGTAACCACTCAATTAGAATGCCCCTTCCCCTTTTACCTCTCCCTCCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23818</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>537249</contig_pos>
        <strand>+</strand>
        <context>TTAGGCCAAT[C/T]AAATCTGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTAGACGAGTTTTTGGCAGCTAGAAGACCTCGGTGGGTTTTAGGCCAAT</left_flank>
        <right_flank>AAATCTGAATTTCGATACCGTAACCACTCAATTAGAATGCCCCTTCCCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCAAAAATTAATATTTTTATTGTTATTGACTCCCCTTTTTTCCAGTCATATATAGCAATGCAAATTCTAGCTCATTTTTTCCCTTTTTTCGGTTTTTCTCTATGGCAGAGCCAACACCTCCCACTCGGCACGTACACACACCTAGCATTTTTTTGCCGTCTTCTAATCTCTCCAGAATCTCCATGGAGACGTCGTGCGGCCCTTAATCCGCACTCCTCCGGTGTCGCCGATTTGTTGTTTTTCTCTGGATAAAATACGGATTCTCTTAATCTGCCTCCCCCCACTCCAAAACATTTTTTAATTCTATTTATTCTCTGAATACATTTTTTGGAGTCTTCTGATTCCCAAAAACCCAAAAAATGGCCGAAGAGGCAGCTGAAAACGTGCCAGTCCCCCCTCCATTGCCGTGGAATGGGAATTTGCACCTGATCCGATATTTGGAGCACATTCTAGACGAGTTTTTGGCAGCTAGAAGACCTCGGTGGGTTTTAGGCCAATGAAATCTGAATTTCGATACCGTAACCACTCAATTAGAATGCCCCTTCCCCTTTTACCTCTCCCTCCTTGGGAGATCCCATAACTTTGACCCTAATTATCTTGGTTCCTGGGAAAGATATCAAAAAGTGGTTAACTACGAAAATGTTGCTGATAATATGAGGAACATTTTGTTAGTGAACCACGTTTTGATATCATTTACAGGGATTGAGATAATTAGGCTTAAAGGGATTACCCCCCCCCCCCCCCCCTTGCCTCTCACCTCTCGGGAGGTCCGATAATTTGGACCTAACTTATCTCGGCTTCTGTGAAAGATACCAAAAAGTAGTTAACTAACAAAATGATGTTTATATTATGAGGAACAGTTTGGCTGTTGACCATTTTTCGATAACTTTTCCAGGAACTGAGATAATTAGGATTAAAGGGATAGGGTCATTTATCAAACTGAACTTGTTAACTGAAACCCGGTCTCTCGTAGCTTGTGAAAACAAAATTGAGCAAAAG</canonical>
            <polymorphic>GTCAAAAATTAATATTTTTATTGTTATTGACTCCCCTTTTTTCCAGTCATATATAGCAATGCAAATTCTAGCTCATTTTTTCCCTTTTTTCGGTTTTTCTCTATGGCAGAGCCAACACCTCCCACTCGGCACGTACACACACCTAGCATTTTTTTGCCGTCTTCTAATCTCTCCAGAATCTCCATGGAGACGTCGTGCGGCCCTTAATCCGCACTCCTCCGGTGTCGCCGATTTGTTGTTTTTCTCTGGATAAAATACGGATTCTCTTAATCTGCCTCCCCCCACTCCAAAACATTTTTTAATTCTATTTATTCTCTGAATACATTTTTTGGAGTCTTCTGATTCCCAAAAACCCAAAAAATGGCCGAAGAGGCAGCTGAAAACGTGCCAGTCCCCCCTCCATTGCCGTGGAATGGGAATTTGCACCTGATCCGATATTTGGAGCACATTCTAGACGAGTTTTTGGCAGCTAGAAGACCTCGGTGGGTTTTAGGCCAATYAAATCTGAATTTCGATACCGTAACCACTCAATTAGAATGCCCCTTCCCCTTTTACCTCTCCCTCCTTGGGAGATCCCATAACTTTGACCCTAATTATCTTGGTTCCTGGGAAAGATATCAAAAAGTGGTTAACTACGAAAATGTTGCTGATAATATGAGGAACATTTTGTTAGTGAACCACGTTTTGATATCATTTACAGGGATTGAGATAATTAGGCTTAAAGGGATTACCCCCCCCCCCCCCCCCTTGCCTCTCACCTCTCGGGAGGTCCGATAATTTGGACCTAACTTATCTCGGCTTCTGTGAAAGATACCAAAAAGTAGTTAACTAACAAAATGATGTTTATATTATGAGGAACAGTTTGGCTGTTGACCATTTTTCGATAACTTTTCCAGGAACTGAGATAATTAGGATTAAAGGGATAGGGTCATTTATCAAACTGAACTTGTTAACTGAAACCCGGTCTCTCGTAGCTTGTGAAAACAAAATTGAGCAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCTTCTGATTCCCAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CAAGGAGGGAGAGGTAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>AGTCTTCTGATTCCCAAAAACCCAAAAAATGGCCGAAGAGGCAGCTGAAAACGTGCCAGTCCCCCCTCCATTGCCGTGGAATGGGAATTTGCACCTGATCCGATATTTGGAGCACATTCTAGACGAGTTTTTGGCAGCTAGAAGACCTCGGTGGGTTTTAGGCCAATGAAATCTGAATTTCGATACCGTAACCACTCAATTAGAATGCCCCTTCCCCTTTTACCTCTCCCTCCTTG</canonical_amplicon>
		<polymorphic_amplicon>AGTCTTCTGATTCCCAAAAACCCAAAAAATGGCCGAAGAGGCAGCTGAAAACGTGCCAGTCCCCCCTCCATTGCCGTGGAATGGGAATTTGCACCTGATCCGATATTTGGAGCACATTCTAGACGAGTTTTTGGCAGCTAGAAGACCTCGGTGGGTTTTAGGCCAATYAAATCTGAATTTCGATACCGTAACCACTCAATTAGAATGCCCCTTCCCCTTTTACCTCTCCCTCCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23819</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>537294</contig_pos>
        <strand>+</strand>
        <context>GAATGCCCCT[C/T]CCCCTTTTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAATGAAATCTGAATTTCGATACCGTAACCACTCAATTAGAATGCCCCT</left_flank>
        <right_flank>CCCCTTTTACCTCTCCCTCCTTGGGAGATCCCATAACTTTGACCCTAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCATATATAGCAATGCAAATTCTAGCTCATTTTTTCCCTTTTTTCGGTTTTTCTCTATGGCAGAGCCAACACCTCCCACTCGGCACGTACACACACCTAGCATTTTTTTGCCGTCTTCTAATCTCTCCAGAATCTCCATGGAGACGTCGTGCGGCCCTTAATCCGCACTCCTCCGGTGTCGCCGATTTGTTGTTTTTCTCTGGATAAAATACGGATTCTCTTAATCTGCCTCCCCCCACTCCAAAACATTTTTTAATTCTATTTATTCTCTGAATACATTTTTTGGAGTCTTCTGATTCCCAAAAACCCAAAAAATGGCCGAAGAGGCAGCTGAAAACGTGCCAGTCCCCCCTCCATTGCCGTGGAATGGGAATTTGCACCTGATCCGATATTTGGAGCACATTCTAGACGAGTTTTTGGCAGCTAGAAGACCTCGGTGGGTTTTAGGCCAATGAAATCTGAATTTCGATACCGTAACCACTCAATTAGAATGCCCCTTCCCCTTTTACCTCTCCCTCCTTGGGAGATCCCATAACTTTGACCCTAATTATCTTGGTTCCTGGGAAAGATATCAAAAAGTGGTTAACTACGAAAATGTTGCTGATAATATGAGGAACATTTTGTTAGTGAACCACGTTTTGATATCATTTACAGGGATTGAGATAATTAGGCTTAAAGGGATTACCCCCCCCCCCCCCCCCTTGCCTCTCACCTCTCGGGAGGTCCGATAATTTGGACCTAACTTATCTCGGCTTCTGTGAAAGATACCAAAAAGTAGTTAACTAACAAAATGATGTTTATATTATGAGGAACAGTTTGGCTGTTGACCATTTTTCGATAACTTTTCCAGGAACTGAGATAATTAGGATTAAAGGGATAGGGTCATTTATCAAACTGAACTTGTTAACTGAAACCCGGTCTCTCGTAGCTTGTGAAAACAAAATTGAGCAAAAGTTGTCAATTATTTGAGCTGAGAGCTTCATTACCAAACTAGTTTAG</canonical>
            <polymorphic>GTCATATATAGCAATGCAAATTCTAGCTCATTTTTTCCCTTTTTTCGGTTTTTCTCTATGGCAGAGCCAACACCTCCCACTCGGCACGTACACACACCTAGCATTTTTTTGCCGTCTTCTAATCTCTCCAGAATCTCCATGGAGACGTCGTGCGGCCCTTAATCCGCACTCCTCCGGTGTCGCCGATTTGTTGTTTTTCTCTGGATAAAATACGGATTCTCTTAATCTGCCTCCCCCCACTCCAAAACATTTTTTAATTCTATTTATTCTCTGAATACATTTTTTGGAGTCTTCTGATTCCCAAAAACCCAAAAAATGGCCGAAGAGGCAGCTGAAAACGTGCCAGTCCCCCCTCCATTGCCGTGGAATGGGAATTTGCACCTGATCCGATATTTGGAGCACATTCTAGACGAGTTTTTGGCAGCTAGAAGACCTCGGTGGGTTTTAGGCCAATGAAATCTGAATTTCGATACCGTAACCACTCAATTAGAATGCCCCTYCCCCTTTTACCTCTCCCTCCTTGGGAGATCCCATAACTTTGACCCTAATTATCTTGGTTCCTGGGAAAGATATCAAAAAGTGGTTAACTACGAAAATGTTGCTGATAATATGAGGAACATTTTGTTAGTGAACCACGTTTTGATATCATTTACAGGGATTGAGATAATTAGGCTTAAAGGGATTACCCCCCCCCCCCCCCCCTTGCCTCTCACCTCTCGGGAGGTCCGATAATTTGGACCTAACTTATCTCGGCTTCTGTGAAAGATACCAAAAAGTAGTTAACTAACAAAATGATGTTTATATTATGAGGAACAGTTTGGCTGTTGACCATTTTTCGATAACTTTTCCAGGAACTGAGATAATTAGGATTAAAGGGATAGGGTCATTTATCAAACTGAACTTGTTAACTGAAACCCGGTCTCTCGTAGCTTGTGAAAACAAAATTGAGCAAAAGTTGTCAATTATTTGAGCTGAGAGCTTCATTACCAAACTAGTTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTTTTGGCAGCTAGAAGA</pcr_primer_p1>
		<pcr_primer_p2>TCAGTTTGATAAATGACCCTATC</pcr_primer_p2>
		<pcr_amplicon_size>487</pcr_amplicon_size>
		<canonical_amplicon>AGTTTTTGGCAGCTAGAAGACCTCGGTGGGTTTTAGGCCAATGAAATCTGAATTTCGATACCGTAACCACTCAATTAGAATGCCCCTTCCCCTTTTACCTCTCCCTCCTTGGGAGATCCCATAACTTTGACCCTAATTATCTTGGTTCCTGGGAAAGATATCAAAAAGTGGTTAACTACGAAAATGTTGCTGATAATATGAGGAACATTTTGTTAGTGAACCACGTTTTGATATCATTTACAGGGATTGAGATAATTAGGCTTAAAGGGATTACCCCCCCCCCCCCCCCCTTGCCTCTCACCTCTCGGGAGGTCCGATAATTTGGACCTAACTTATCTCGGCTTCTGTGAAAGATACCAAAAAGTAGTTAACTAACAAAATGATGTTTATATTATGAGGAACAGTTTGGCTGTTGACCATTTTTCGATAACTTTTCCAGGAACTGAGATAATTAGGATTAAAGGGATAGGGTCATTTATCAAACTGA</canonical_amplicon>
		<polymorphic_amplicon>AGTTTTTGGCAGCTAGAAGACCTCGGTGGGTTTTAGGCCAATGAAATCTGAATTTCGATACCGTAACCACTCAATTAGAATGCCCCTYCCCCTTTTACCTCTCCCTCCTTGGGAGATCCCATAACTTTGACCCTAATTATCTTGGTTCCTGGGAAAGATATCAAAAAGTGGTTAACTACGAAAATGTTGCTGATAATATGAGGAACATTTTGTTAGTGAACCACGTTTTGATATCATTTACAGGGATTGAGATAATTAGGCTTAAAGGGATTACCCCCCCCCCCCCCCCCTTGCCTCTCACCTCTCGGGAGGTCCGATAATTTGGACCTAACTTATCTCGGCTTCTGTGAAAGATACCAAAAAGTAGTTAACTAACAAAATGATGTTTATATTATGAGGAACAGTTTGGCTGTTGACCATTTTTCGATAACTTTTCCAGGAACTGAGATAATTAGGATTAAAGGGATAGGGTCATTTATCAAACTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23820</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>541168</contig_pos>
        <strand>+</strand>
        <context>ATGCTAGGAA[A/G]TCAATTTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTTGAAACTATGATTTTCAAACTCAGCGTATTTGAAAATGCTAGGAA</left_flank>
        <right_flank>TCAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCA</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAATAGTTTTTCAAGCGTCCCAAGTTATCCATTTTCGACAGCCATTTTTTTCAAGTTTCAAGTTTTTGAACCCAATTTTTCGGATGTTTCTCGAATTTTTTATGGTGTAAATCCGCGATTTTCAAATTCTGTGAGTTTCAAAAAATGCTAGAAAATCAACTTTCAGACAAATCGAAGTAGTTTAAGATGCGTTTTTGGGATTCTCAAAGTGGGCCTTTGCTAGCTTTGAAGGTGGGATTTTTGAACATAATTTTGAGCTGTTTCTTGCGTTTCTCAAAATTTCTACGTATGATTTTTGAATTCAACTTGTTTGAAAATGCTAGAAAATCGATTTTCAGAGAAATCCAAGTATTTTCAGAACCGTTTTCAGATTTTTGAATGCGAATCCATGTTTTTTATAGTATTCTTTTTTTGAGCCTACAATTTCGGATCTTTACAGAATTTTAAAAATTTGAAACTATGATTTTCAAACTCAGCGTATTTGAAAATGCTAGGAAATCAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCGCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTCCTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCAAGAAGAAGAAGAAGAAGCACTCAAACTCACACCCCACAGAGATCAAGAAGACGACGTTTCTTGCTTTTCTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTCTGCGTCTCTAATCTCTGGTATCCATGGATACCCCAGCCCTCTTTTTCTCTTTCCCCGTCTTCTTTTTGTTTTTTCTGGAAATTTTTTATTTTGACTACAAACTACAATTTTCAGGTAATCGATCCATCTCGGTATCCAACCATTACCTATTTACCCCGGGA</canonical>
            <polymorphic>TAAAATAGTTTTTCAAGCGTCCCAAGTTATCCATTTTCGACAGCCATTTTTTTCAAGTTTCAAGTTTTTGAACCCAATTTTTCGGATGTTTCTCGAATTTTTTATGGTGTAAATCCGCGATTTTCAAATTCTGTGAGTTTCAAAAAATGCTAGAAAATCAACTTTCAGACAAATCGAAGTAGTTTAAGATGCGTTTTTGGGATTCTCAAAGTGGGCCTTTGCTAGCTTTGAAGGTGGGATTTTTGAACATAATTTTGAGCTGTTTCTTGCGTTTCTCAAAATTTCTACGTATGATTTTTGAATTCAACTTGTTTGAAAATGCTAGAAAATCGATTTTCAGAGAAATCCAAGTATTTTCAGAACCGTTTTCAGATTTTTGAATGCGAATCCATGTTTTTTATAGTATTCTTTTTTTGAGCCTACAATTTCGGATCTTTACAGAATTTTAAAAATTTGAAACTATGATTTTCAAACTCAGCGTATTTGAAAATGCTAGGAARTCAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCGCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTCCTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCAAGAAGAAGAAGAAGAAGCACTCAAACTCACACCCCACAGAGATCAAGAAGACGACGTTTCTTGCTTTTCTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTCTGCGTCTCTAATCTCTGGTATCCATGGATACCCCAGCCCTCTTTTTCTCTTTCCCCGTCTTCTTTTTGTTTTTTCTGGAAATTTTTTATTTTGACTACAAACTACAATTTTCAGGTAATCGATCCATCTCGGTATCCAACCATTACCTATTTACCCCGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTCGGATCTTTACAGAATTT</pcr_primer_p1>
		<pcr_primer_p2>AAGAGAAGAGCAAGAAGAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTTCGGATCTTTACAGAATTTTAAAAATTTGAAACTATGATTTTCAAACTCAGCGTATTTGAAAATGCTAGGAAATCAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCGCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTT</canonical_amplicon>
		<polymorphic_amplicon>AATTTCGGATCTTTACAGAATTTTAAAAATTTGAAACTATGATTTTCAAACTCAGCGTATTTGAAAATGCTAGGAARTCAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCGCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23821</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>541222</contig_pos>
        <strand>+</strand>
        <context>ATTCTCAAAC[G/T]TGATTTCTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAAC</left_flank>
        <right_flank>TGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCGCCATTAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTTCAAGTTTTTGAACCCAATTTTTCGGATGTTTCTCGAATTTTTTATGGTGTAAATCCGCGATTTTCAAATTCTGTGAGTTTCAAAAAATGCTAGAAAATCAACTTTCAGACAAATCGAAGTAGTTTAAGATGCGTTTTTGGGATTCTCAAAGTGGGCCTTTGCTAGCTTTGAAGGTGGGATTTTTGAACATAATTTTGAGCTGTTTCTTGCGTTTCTCAAAATTTCTACGTATGATTTTTGAATTCAACTTGTTTGAAAATGCTAGAAAATCGATTTTCAGAGAAATCCAAGTATTTTCAGAACCGTTTTCAGATTTTTGAATGCGAATCCATGTTTTTTATAGTATTCTTTTTTTGAGCCTACAATTTCGGATCTTTACAGAATTTTAAAAATTTGAAACTATGATTTTCAAACTCAGCGTATTTGAAAATGCTAGGAAATCAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCGCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTCCTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCAAGAAGAAGAAGAAGAAGCACTCAAACTCACACCCCACAGAGATCAAGAAGACGACGTTTCTTGCTTTTCTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTCTGCGTCTCTAATCTCTGGTATCCATGGATACCCCAGCCCTCTTTTTCTCTTTCCCCGTCTTCTTTTTGTTTTTTCTGGAAATTTTTTATTTTGACTACAAACTACAATTTTCAGGTAATCGATCCATCTCGGTATCCAACCATTACCTATTTACCCCGGGACATTTTTGAAAAATCCGAATAAAAATCTTAAAAAGGTTTGTATCCATCTGTGTG</canonical>
            <polymorphic>AAGTTTCAAGTTTTTGAACCCAATTTTTCGGATGTTTCTCGAATTTTTTATGGTGTAAATCCGCGATTTTCAAATTCTGTGAGTTTCAAAAAATGCTAGAAAATCAACTTTCAGACAAATCGAAGTAGTTTAAGATGCGTTTTTGGGATTCTCAAAGTGGGCCTTTGCTAGCTTTGAAGGTGGGATTTTTGAACATAATTTTGAGCTGTTTCTTGCGTTTCTCAAAATTTCTACGTATGATTTTTGAATTCAACTTGTTTGAAAATGCTAGAAAATCGATTTTCAGAGAAATCCAAGTATTTTCAGAACCGTTTTCAGATTTTTGAATGCGAATCCATGTTTTTTATAGTATTCTTTTTTTGAGCCTACAATTTCGGATCTTTACAGAATTTTAAAAATTTGAAACTATGATTTTCAAACTCAGCGTATTTGAAAATGCTAGGAAATCAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACKTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCGCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTCCTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCAAGAAGAAGAAGAAGAAGCACTCAAACTCACACCCCACAGAGATCAAGAAGACGACGTTTCTTGCTTTTCTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTCTGCGTCTCTAATCTCTGGTATCCATGGATACCCCAGCCCTCTTTTTCTCTTTCCCCGTCTTCTTTTTGTTTTTTCTGGAAATTTTTTATTTTGACTACAAACTACAATTTTCAGGTAATCGATCCATCTCGGTATCCAACCATTACCTATTTACCCCGGGACATTTTTGAAAAATCCGAATAAAAATCTTAAAAAGGTTTGTATCCATCTGTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTTTCAGAGAAATCCAAATA</pcr_primer_p1>
		<pcr_primer_p2>GAGTGCTTCTTCTTCTTCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCGCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTCCTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCAAGAAGAAGAAGAAGAAGCACTC</canonical_amplicon>
		<polymorphic_amplicon>CAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACKTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCGCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTCCTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCAAGAAGAAGAAGAAGAAGCACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23822</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>541260</contig_pos>
        <strand>+</strand>
        <context>GTTTTTCTTT[G/T]TCSCCATTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTT</left_flank>
        <right_flank>TCGCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGCGGTAGAT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGAATTTTTTATGGTGTAAATCCGCGATTTTCAAATTCTGTGAGTTTCAAAAAATGCTAGAAAATCAACTTTCAGACAAATCGAAGTAGTTTAAGATGCGTTTTTGGGATTCTCAAAGTGGGCCTTTGCTAGCTTTGAAGGTGGGATTTTTGAACATAATTTTGAGCTGTTTCTTGCGTTTCTCAAAATTTCTACGTATGATTTTTGAATTCAACTTGTTTGAAAATGCTAGAAAATCGATTTTCAGAGAAATCCAAGTATTTTCAGAACCGTTTTCAGATTTTTGAATGCGAATCCATGTTTTTTATAGTATTCTTTTTTTGAGCCTACAATTTCGGATCTTTACAGAATTTTAAAAATTTGAAACTATGATTTTCAAACTCAGCGTATTTGAAAATGCTAGGAAATCAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCGCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTCCTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCAAGAAGAAGAAGAAGAAGCACTCAAACTCACACCCCACAGAGATCAAGAAGACGACGTTTCTTGCTTTTCTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTCTGCGTCTCTAATCTCTGGTATCCATGGATACCCCAGCCCTCTTTTTCTCTTTCCCCGTCTTCTTTTTGTTTTTTCTGGAAATTTTTTATTTTGACTACAAACTACAATTTTCAGGTAATCGATCCATCTCGGTATCCAACCATTACCTATTTACCCCGGGACATTTTTGAAAAATCCGAATAAAAATCTTAAAAAGGTTTGTATCCATCTGTGTGTCGGTTTATCCAGTTTCTTTTTTTTCCTACAGTAATCC</canonical>
            <polymorphic>TCGAATTTTTTATGGTGTAAATCCGCGATTTTCAAATTCTGTGAGTTTCAAAAAATGCTAGAAAATCAACTTTCAGACAAATCGAAGTAGTTTAAGATGCGTTTTTGGGATTCTCAAAGTGGGCCTTTGCTAGCTTTGAAGGTGGGATTTTTGAACATAATTTTGAGCTGTTTCTTGCGTTTCTCAAAATTTCTACGTATGATTTTTGAATTCAACTTGTTTGAAAATGCTAGAAAATCGATTTTCAGAGAAATCCAAGTATTTTCAGAACCGTTTTCAGATTTTTGAATGCGAATCCATGTTTTTTATAGTATTCTTTTTTTGAGCCTACAATTTCGGATCTTTACAGAATTTTAAAAATTTGAAACTATGATTTTCAAACTCAGCGTATTTGAAAATGCTAGGAAATCAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTKTCGCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTCCTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCAAGAAGAAGAAGAAGAAGCACTCAAACTCACACCCCACAGAGATCAAGAAGACGACGTTTCTTGCTTTTCTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTCTGCGTCTCTAATCTCTGGTATCCATGGATACCCCAGCCCTCTTTTTCTCTTTCCCCGTCTTCTTTTTGTTTTTTCTGGAAATTTTTTATTTTGACTACAAACTACAATTTTCAGGTAATCGATCCATCTCGGTATCCAACCATTACCTATTTACCCCGGGACATTTTTGAAAAATCCGAATAAAAATCTTAAAAAGGTTTGTATCCATCTGTGTGTCGGTTTATCCAGTTTCTTTTTTTTCCTACAGTAATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTTTCAGAGAAATCCAAATA</pcr_primer_p1>
		<pcr_primer_p2>GAGTGCTTCTTCTTCTTCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCGCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTCCTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCAAGAAGAAGAAGAAGAAGCACTC</canonical_amplicon>
		<polymorphic_amplicon>CAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTKTCGCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTCCTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCAAGAAGAAGAAGAAGAAGCACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23823</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>541263</contig_pos>
        <strand>+</strand>
        <context>TTTCTTTKTC[C/G]CCATTAGAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTC</left_flank>
        <right_flank>CCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTTTATGGTGTAAATCCGCGATTTTCAAATTCTGTGAGTTTCAAAAAATGCTAGAAAATCAACTTTCAGACAAATCGAAGTAGTTTAAGATGCGTTTTTGGGATTCTCAAAGTGGGCCTTTGCTAGCTTTGAAGGTGGGATTTTTGAACATAATTTTGAGCTGTTTCTTGCGTTTCTCAAAATTTCTACGTATGATTTTTGAATTCAACTTGTTTGAAAATGCTAGAAAATCGATTTTCAGAGAAATCCAAGTATTTTCAGAACCGTTTTCAGATTTTTGAATGCGAATCCATGTTTTTTATAGTATTCTTTTTTTGAGCCTACAATTTCGGATCTTTACAGAATTTTAAAAATTTGAAACTATGATTTTCAAACTCAGCGTATTTGAAAATGCTAGGAAATCAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCGCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTCCTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCAAGAAGAAGAAGAAGAAGCACTCAAACTCACACCCCACAGAGATCAAGAAGACGACGTTTCTTGCTTTTCTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTCTGCGTCTCTAATCTCTGGTATCCATGGATACCCCAGCCCTCTTTTTCTCTTTCCCCGTCTTCTTTTTGTTTTTTCTGGAAATTTTTTATTTTGACTACAAACTACAATTTTCAGGTAATCGATCCATCTCGGTATCCAACCATTACCTATTTACCCCGGGACATTTTTGAAAAATCCGAATAAAAATCTTAAAAAGGTTTGTATCCATCTGTGTGTCGGTTTATCCAGTTTCTTTTTTTTCCTACAGTAATCCTGA</canonical>
            <polymorphic>AATTTTTTATGGTGTAAATCCGCGATTTTCAAATTCTGTGAGTTTCAAAAAATGCTAGAAAATCAACTTTCAGACAAATCGAAGTAGTTTAAGATGCGTTTTTGGGATTCTCAAAGTGGGCCTTTGCTAGCTTTGAAGGTGGGATTTTTGAACATAATTTTGAGCTGTTTCTTGCGTTTCTCAAAATTTCTACGTATGATTTTTGAATTCAACTTGTTTGAAAATGCTAGAAAATCGATTTTCAGAGAAATCCAAGTATTTTCAGAACCGTTTTCAGATTTTTGAATGCGAATCCATGTTTTTTATAGTATTCTTTTTTTGAGCCTACAATTTCGGATCTTTACAGAATTTTAAAAATTTGAAACTATGATTTTCAAACTCAGCGTATTTGAAAATGCTAGGAAATCAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCSCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTCCTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCAAGAAGAAGAAGAAGAAGCACTCAAACTCACACCCCACAGAGATCAAGAAGACGACGTTTCTTGCTTTTCTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTCTGCGTCTCTAATCTCTGGTATCCATGGATACCCCAGCCCTCTTTTTCTCTTTCCCCGTCTTCTTTTTGTTTTTTCTGGAAATTTTTTATTTTGACTACAAACTACAATTTTCAGGTAATCGATCCATCTCGGTATCCAACCATTACCTATTTACCCCGGGACATTTTTGAAAAATCCGAATAAAAATCTTAAAAAGGTTTGTATCCATCTGTGTGTCGGTTTATCCAGTTTCTTTTTTTTCCTACAGTAATCCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTTTCAGAGAAATCCAAATA</pcr_primer_p1>
		<pcr_primer_p2>GAGTGCTTCTTCTTCTTCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCGCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTCCTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCAAGAAGAAGAAGAAGAAGCACTC</canonical_amplicon>
		<polymorphic_amplicon>CAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCSCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTCCTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCAAGAAGAAGAAGAAGAAGCACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23824</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>541277</contig_pos>
        <strand>+</strand>
        <context>TTAGAGAGAG[C/T]AAAAAGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCGCCATTAGAGAGAG</left_flank>
        <right_flank>AAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATCCGCGATTTTCAAATTCTGTGAGTTTCAAAAAATGCTAGAAAATCAACTTTCAGACAAATCGAAGTAGTTTAAGATGCGTTTTTGGGATTCTCAAAGTGGGCCTTTGCTAGCTTTGAAGGTGGGATTTTTGAACATAATTTTGAGCTGTTTCTTGCGTTTCTCAAAATTTCTACGTATGATTTTTGAATTCAACTTGTTTGAAAATGCTAGAAAATCGATTTTCAGAGAAATCCAAGTATTTTCAGAACCGTTTTCAGATTTTTGAATGCGAATCCATGTTTTTTATAGTATTCTTTTTTTGAGCCTACAATTTCGGATCTTTACAGAATTTTAAAAATTTGAAACTATGATTTTCAAACTCAGCGTATTTGAAAATGCTAGGAAATCAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCGCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTCCTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCAAGAAGAAGAAGAAGAAGCACTCAAACTCACACCCCACAGAGATCAAGAAGACGACGTTTCTTGCTTTTCTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTCTGCGTCTCTAATCTCTGGTATCCATGGATACCCCAGCCCTCTTTTTCTCTTTCCCCGTCTTCTTTTTGTTTTTTCTGGAAATTTTTTATTTTGACTACAAACTACAATTTTCAGGTAATCGATCCATCTCGGTATCCAACCATTACCTATTTACCCCGGGACATTTTTGAAAAATCCGAATAAAAATCTTAAAAAGGTTTGTATCCATCTGTGTGTCGGTTTATCCAGTTTCTTTTTTTTCCTACAGTAATCCTGACCAATCTACAGTAA</canonical>
            <polymorphic>TAAATCCGCGATTTTCAAATTCTGTGAGTTTCAAAAAATGCTAGAAAATCAACTTTCAGACAAATCGAAGTAGTTTAAGATGCGTTTTTGGGATTCTCAAAGTGGGCCTTTGCTAGCTTTGAAGGTGGGATTTTTGAACATAATTTTGAGCTGTTTCTTGCGTTTCTCAAAATTTCTACGTATGATTTTTGAATTCAACTTGTTTGAAAATGCTAGAAAATCGATTTTCAGAGAAATCCAAGTATTTTCAGAACCGTTTTCAGATTTTTGAATGCGAATCCATGTTTTTTATAGTATTCTTTTTTTGAGCCTACAATTTCGGATCTTTACAGAATTTTAAAAATTTGAAACTATGATTTTCAAACTCAGCGTATTTGAAAATGCTAGGAAATCAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCGCCATTAGAGAGAGYAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTCCTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCAAGAAGAAGAAGAAGAAGCACTCAAACTCACACCCCACAGAGATCAAGAAGACGACGTTTCTTGCTTTTCTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTCTGCGTCTCTAATCTCTGGTATCCATGGATACCCCAGCCCTCTTTTTCTCTTTCCCCGTCTTCTTTTTGTTTTTTCTGGAAATTTTTTATTTTGACTACAAACTACAATTTTCAGGTAATCGATCCATCTCGGTATCCAACCATTACCTATTTACCCCGGGACATTTTTGAAAAATCCGAATAAAAATCTTAAAAAGGTTTGTATCCATCTGTGTGTCGGTTTATCCAGTTTCTTTTTTTTCCTACAGTAATCCTGACCAATCTACAGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTTTCAGAGAAATCCAAATA</pcr_primer_p1>
		<pcr_primer_p2>GAGTGCTTCTTCTTCTTCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCGCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTCCTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCAAGAAGAAGAAGAAGAAGCACTC</canonical_amplicon>
		<polymorphic_amplicon>CAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCGCCATTAGAGAGAGYAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTCCTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCAAGAAGAAGAAGAAGAAGCACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23825</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>541303</contig_pos>
        <strand></strand>
        <context>ATCCATGGTG[C/T]GGTAGATGGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCTTTTTCGCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTG</left_flank>
        <right_flank>GGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTCCTCTAACCA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTTCAAAAAATGCTAGAAAATCAACTTTCAGACAAATCGAAGTAGTTTAAGATGCGTTTTTGGGATTCTCAAAGTGGGCCTTTGCTAGCTTTGAAGGTGGGATTTTTGAACATAATTTTGAGCTGTTTCTTGCGTTTCTCAAAATTTCTACGTATGATTTTTGAATTCAACTTGTTTGAAAATGCTAGAAAATCGATTTTCAGAGAAATCCAAGTATTTTCAGAACCGTTTTCAGATTTTTGAATGCGAATCCATGTTTTTTATAGTATTCTTTTTTTGAGCCTACAATTTCGGATCTTTACAGAATTTTAAAAATTTGAAACTATGATTTTCAAACTCAGCGTATTTGAAAATGCTAGGAAATCAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCGCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTCCTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCAAGAAGAAGAAGAAGAAGCACTCAAACTCACACCCCACAGAGATCAAGAAGACGACGTTTCTTGCTTTTCTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTCTGCGTCTCTAATCTCTGGTATCCATGGATACCCCAGCCCTCTTTTTCTCTTTCCCCGTCTTCTTTTTGTTTTTTCTGGAAATTTTTTATTTTGACTACAAACTACAATTTTCAGGTAATCGATCCATCTCGGTATCCAACCATTACCTATTTACCCCGGGACATTTTTGAAAAATCCGAATAAAAATCTTAAAAAGGTTTGTATCCATCTGTGTGTCGGTTTATCCAGTTTCTTTTTTTTCCTACAGTAATCCTGACCAATCTACAGTAATCCCTACAACCAATGTCCAGATTGCG</canonical>
            <polymorphic>AGTTTCAAAAAATGCTAGAAAATCAACTTTCAGACAAATCGAAGTAGTTTAAGATGCGTTTTTGGGATTCTCAAAGTGGGCCTTTGCTAGCTTTGAAGGTGGGATTTTTGAACATAATTTTGAGCTGTTTCTTGCGTTTCTCAAAATTTCTACGTATGATTTTTGAATTCAACTTGTTTGAAAATGCTAGAAAATCGATTTTCAGAGAAATCCAAGTATTTTCAGAACCGTTTTCAGATTTTTGAATGCGAATCCATGTTTTTTATAGTATTCTTTTTTTGAGCCTACAATTTCGGATCTTTACAGAATTTTAAAAATTTGAAACTATGATTTTCAAACTCAGCGTATTTGAAAATGCTAGGAAATCAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCGCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGYGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTCCTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCAAGAAGAAGAAGAAGAAGCACTCAAACTCACACCCCACAGAGATCAAGAAGACGACGTTTCTTGCTTTTCTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTCTGCGTCTCTAATCTCTGGTATCCATGGATACCCCAGCCCTCTTTTTCTCTTTCCCCGTCTTCTTTTTGTTTTTTCTGGAAATTTTTTATTTTGACTACAAACTACAATTTTCAGGTAATCGATCCATCTCGGTATCCAACCATTACCTATTTACCCCGGGACATTTTTGAAAAATCCGAATAAAAATCTTAAAAAGGTTTGTATCCATCTGTGTGTCGGTTTATCCAGTTTCTTTTTTTTCCTACAGTAATCCTGACCAATCTACAGTAATCCCTACAACCAATGTCCAGATTGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTTTCAGAGAAATCCAAATA</pcr_primer_p1>
		<pcr_primer_p2>GAGTGCTTCTTCTTCTTCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCGCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTCCTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCAAGAAGAAGAAGAAGAAGCACTC</canonical_amplicon>
		<polymorphic_amplicon>CAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCGCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGYGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTCCTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCAAGAAGAAGAAGAAGAAGCACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23826</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>541344</contig_pos>
        <strand>+</strand>
        <context>CTTCTCTTTT[C/T]CTCTAACCAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTT</left_flank>
        <right_flank>CTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTAGTTTAAGATGCGTTTTTGGGATTCTCAAAGTGGGCCTTTGCTAGCTTTGAAGGTGGGATTTTTGAACATAATTTTGAGCTGTTTCTTGCGTTTCTCAAAATTTCTACGTATGATTTTTGAATTCAACTTGTTTGAAAATGCTAGAAAATCGATTTTCAGAGAAATCCAAGTATTTTCAGAACCGTTTTCAGATTTTTGAATGCGAATCCATGTTTTTTATAGTATTCTTTTTTTGAGCCTACAATTTCGGATCTTTACAGAATTTTAAAAATTTGAAACTATGATTTTCAAACTCAGCGTATTTGAAAATGCTAGGAAATCAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCGCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTCCTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCAAGAAGAAGAAGAAGAAGCACTCAAACTCACACCCCACAGAGATCAAGAAGACGACGTTTCTTGCTTTTCTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTCTGCGTCTCTAATCTCTGGTATCCATGGATACCCCAGCCCTCTTTTTCTCTTTCCCCGTCTTCTTTTTGTTTTTTCTGGAAATTTTTTATTTTGACTACAAACTACAATTTTCAGGTAATCGATCCATCTCGGTATCCAACCATTACCTATTTACCCCGGGACATTTTTGAAAAATCCGAATAAAAATCTTAAAAAGGTTTGTATCCATCTGTGTGTCGGTTTATCCAGTTTCTTTTTTTTCCTACAGTAATCCTGACCAATCTACAGTAATCCCTACAACCAATGTCCAGATTGCGCCACAATCCGTACCCACACGGTTTGTCGTACAACCCATATG</canonical>
            <polymorphic>AAGTAGTTTAAGATGCGTTTTTGGGATTCTCAAAGTGGGCCTTTGCTAGCTTTGAAGGTGGGATTTTTGAACATAATTTTGAGCTGTTTCTTGCGTTTCTCAAAATTTCTACGTATGATTTTTGAATTCAACTTGTTTGAAAATGCTAGAAAATCGATTTTCAGAGAAATCCAAGTATTTTCAGAACCGTTTTCAGATTTTTGAATGCGAATCCATGTTTTTTATAGTATTCTTTTTTTGAGCCTACAATTTCGGATCTTTACAGAATTTTAAAAATTTGAAACTATGATTTTCAAACTCAGCGTATTTGAAAATGCTAGGAAATCAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCGCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTYCTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCAAGAAGAAGAAGAAGAAGCACTCAAACTCACACCCCACAGAGATCAAGAAGACGACGTTTCTTGCTTTTCTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTCTGCGTCTCTAATCTCTGGTATCCATGGATACCCCAGCCCTCTTTTTCTCTTTCCCCGTCTTCTTTTTGTTTTTTCTGGAAATTTTTTATTTTGACTACAAACTACAATTTTCAGGTAATCGATCCATCTCGGTATCCAACCATTACCTATTTACCCCGGGACATTTTTGAAAAATCCGAATAAAAATCTTAAAAAGGTTTGTATCCATCTGTGTGTCGGTTTATCCAGTTTCTTTTTTTTCCTACAGTAATCCTGACCAATCTACAGTAATCCCTACAACCAATGTCCAGATTGCGCCACAATCCGTACCCACACGGTTTGTCGTACAACCCATATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTTTCAGAGAAATCCAAATA</pcr_primer_p1>
		<pcr_primer_p2>GAGTGCTTCTTCTTCTTCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCGCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTCCTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCAAGAAGAAGAAGAAGAAGCACTC</canonical_amplicon>
		<polymorphic_amplicon>CAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCGCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTYCTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCAAGAAGAAGAAGAAGAAGCACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23827</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>541510</contig_pos>
        <strand></strand>
        <context>cttttctctG[C/T]GTCTCTAATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTCTG</left_flank>
        <right_flank>GTCTCTAATCTCTGGTATCCATGGATACCCCAGCCCTCTTTTTCTCTTTC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCCAAGTATTTTCAGAACCGTTTTCAGATTTTTGAATGCGAATCCATGTTTTTTATAGTATTCTTTTTTTGAGCCTACAATTTCGGATCTTTACAGAATTTTAAAAATTTGAAACTATGATTTTCAAACTCAGCGTATTTGAAAATGCTAGGAAATCAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCGCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTCCTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCAAGAAGAAGAAGAAGAAGCACTCAAACTCACACCCCACAGAGATCAAGAAGACGACGTTTCTTGCTTTTCTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTCTGCGTCTCTAATCTCTGGTATCCATGGATACCCCAGCCCTCTTTTTCTCTTTCCCCGTCTTCTTTTTGTTTTTTCTGGAAATTTTTTATTTTGACTACAAACTACAATTTTCAGGTAATCGATCCATCTCGGTATCCAACCATTACCTATTTACCCCGGGACATTTTTGAAAAATCCGAATAAAAATCTTAAAAAGGTTTGTATCCATCTGTGTGTCGGTTTATCCAGTTTCTTTTTTTTCCTACAGTAATCCTGACCAATCTACAGTAATCCCTACAACCAATGTCCAGATTGCGCCACAATCCGTACCCACACGGTTTGTCGTACAACCCATATGCTGGCAGCAGGTAAGGTGTCTTCCACGTGACATATCTCCCCAGGACTTGATTTTTGAAAAAAGTTGTCAACTACAAAAATGAAGCACTAGTTTTGATTAGTATATTCTGAAAATTTCAGACAAATTGAACAAATTTGAGTTAGGTTTTTAGATGCTCAAAGTTAGC</canonical>
            <polymorphic>AAATCCAAGTATTTTCAGAACCGTTTTCAGATTTTTGAATGCGAATCCATGTTTTTTATAGTATTCTTTTTTTGAGCCTACAATTTCGGATCTTTACAGAATTTTAAAAATTTGAAACTATGATTTTCAAACTCAGCGTATTTGAAAATGCTAGGAAATCAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCGCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTCCTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCAAGAAGAAGAAGAAGAAGCACTCAAACTCACACCCCACAGAGATCAAGAAGACGACGTTTCTTGCTTTTCTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTCTGYGTCTCTAATCTCTGGTATCCATGGATACCCCAGCCCTCTTTTTCTCTTTCCCCGTCTTCTTTTTGTTTTTTCTGGAAATTTTTTATTTTGACTACAAACTACAATTTTCAGGTAATCGATCCATCTCGGTATCCAACCATTACCTATTTACCCCGGGACATTTTTGAAAAATCCGAATAAAAATCTTAAAAAGGTTTGTATCCATCTGTGTGTCGGTTTATCCAGTTTCTTTTTTTTCCTACAGTAATCCTGACCAATCTACAGTAATCCCTACAACCAATGTCCAGATTGCGCCACAATCCGTACCCACACGGTTTGTCGTACAACCCATATGCTGGCAGCAGGTAAGGTGTCTTCCACGTGACATATCTCCCCAGGACTTGATTTTTGAAAAAAGTTGTCAACTACAAAAATGAAGCACTAGTTTTGATTAGTATATTCTGAAAATTTCAGACAAATTGAACAAATTTGAGTTAGGTTTTTAGATGCTCAAAGTTAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGAGTGTCAAGAAGAAGAAGAA</pcr_primer_p1>
		<pcr_primer_p2>GATCGATTACCTGAAAATTGTAGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTGAGTGTCAAGAAGAAGAAGAAGAAGCACTCAAACTCACACCCCACAGAGATCAAGAAGACGACGTTTCTTGCTTTTCTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTCTGCGTCTCTAATCTCTGGTATCCATGGATACCCCAGCCCTCTTTTTCTCTTTCCCCGTCTTCTTTTTGTTTTTTCTGGAAATTTTTTATTTTGACTACAAACTACAATTTTCAGGTAATCGATC</canonical_amplicon>
		<polymorphic_amplicon>GTGAGTGTCAAGAAGAAGAAGAAGAAGCACTCAAACTCACACCCCACAGAGATCAAGAAGACGACGTTTCTTGCTTTTCTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTCTGYGTCTCTAATCTCTGGTATCCATGGATACCCCAGCCCTCTTTTTCTCTTTCCCCGTCTTCTTTTTGTTTTTTCTGGAAATTTTTTATTTTGACTACAAACTACAATTTTCAGGTAATCGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23828</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>541660</contig_pos>
        <strand>+</strand>
        <context>TTACCTATTT[A/T]CCCCGGGASA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TACAATTTTCAGGTAATCGATCCATCTCGGTATCCAACCATTACCTATTT</left_flank>
        <right_flank>CCCCGGGACATTTTTGAAAAATCCGAATAAAAATCTTAAAAAGGTTTGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGGAAATCAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCGCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTCCTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCAAGAAGAAGAAGAAGAAGCACTCAAACTCACACCCCACAGAGATCAAGAAGACGACGTTTCTTGCTTTTCTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTCTGCGTCTCTAATCTCTGGTATCCATGGATACCCCAGCCCTCTTTTTCTCTTTCCCCGTCTTCTTTTTGTTTTTTCTGGAAATTTTTTATTTTGACTACAAACTACAATTTTCAGGTAATCGATCCATCTCGGTATCCAACCATTACCTATTTACCCCGGGACATTTTTGAAAAATCCGAATAAAAATCTTAAAAAGGTTTGTATCCATCTGTGTGTCGGTTTATCCAGTTTCTTTTTTTTCCTACAGTAATCCTGACCAATCTACAGTAATCCCTACAACCAATGTCCAGATTGCGCCACAATCCGTACCCACACGGTTTGTCGTACAACCCATATGCTGGCAGCAGGTAAGGTGTCTTCCACGTGACATATCTCCCCAGGACTTGATTTTTGAAAAAAGTTGTCAACTACAAAAATGAAGCACTAGTTTTGATTAGTATATTCTGAAAATTTCAGACAAATTGAACAAATTTGAGTTAGGTTTTTAGATGCTCAAAGTTAGCCATTTTTTGAAATTTTTTTTTGAAATTTAGGTCAATTTGAAACTCAATTTTCAGTATTTTCTAAGTTGTTTCAACTTGTCAAACTGTGATTTCTGAATTTGGCGTATTTAAAAAACACTAGAAATTCTGTTTTCTAAAAAAAATAAGCAA</canonical>
            <polymorphic>CTAGGAAATCAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCGCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTCCTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCAAGAAGAAGAAGAAGAAGCACTCAAACTCACACCCCACAGAGATCAAGAAGACGACGTTTCTTGCTTTTCTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTCTGCGTCTCTAATCTCTGGTATCCATGGATACCCCAGCCCTCTTTTTCTCTTTCCCCGTCTTCTTTTTGTTTTTTCTGGAAATTTTTTATTTTGACTACAAACTACAATTTTCAGGTAATCGATCCATCTCGGTATCCAACCATTACCTATTTWCCCCGGGACATTTTTGAAAAATCCGAATAAAAATCTTAAAAAGGTTTGTATCCATCTGTGTGTCGGTTTATCCAGTTTCTTTTTTTTCCTACAGTAATCCTGACCAATCTACAGTAATCCCTACAACCAATGTCCAGATTGCGCCACAATCCGTACCCACACGGTTTGTCGTACAACCCATATGCTGGCAGCAGGTAAGGTGTCTTCCACGTGACATATCTCCCCAGGACTTGATTTTTGAAAAAAGTTGTCAACTACAAAAATGAAGCACTAGTTTTGATTAGTATATTCTGAAAATTTCAGACAAATTGAACAAATTTGAGTTAGGTTTTTAGATGCTCAAAGTTAGCCATTTTTTGAAATTTTTTTTTGAAATTTAGGTCAATTTGAAACTCAATTTTCAGTATTTTCTAAGTTGTTTCAACTTGTCAAACTGTGATTTCTGAATTTGGCGTATTTAAAAAACACTAGAAATTCTGTTTTCTAAAAAAAATAAGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCCCTCTTTTTCTCTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTGGTTGTAGGGATTACTGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGCCCTCTTTTTCTCTTTCCCCGTCTTCTTTTTGTTTTTTCTGGAAATTTTTTATTTTGACTACAAACTACAATTTTCAGGTAATCGATCCATCTCGGTATCCAACCATTACCTATTTACCCCGGGACATTTTTGAAAAATCCGAATAAAAATCTTAAAAAGGTTTGTATCCATCTGTGTGTCGGTTTATCCAGTTTCTTTTTTTTCCTACAGTAATCCTGACCAATCTACAGTAATCCCTACAACCAA</canonical_amplicon>
		<polymorphic_amplicon>CAGCCCTCTTTTTCTCTTTCCCCGTCTTCTTTTTGTTTTTTCTGGAAATTTTTTATTTTGACTACAAACTACAATTTTCAGGTAATCGATCCATCTCGGTATCCAACCATTACCTATTTWCCCCGGGACATTTTTGAAAAATCCGAATAAAAATCTTAAAAAGGTTTGTATCCATCTGTGTGTCGGTTTATCCAGTTTCTTTTTTTTCCTACAGTAATCCTGACCAATCTACAGTAATCCCTACAACCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23829</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>541669</contig_pos>
        <strand>+</strand>
        <context>TWCCCCGGGA[C/G]ATTTTTGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAGGTAATCGATCCATCTCGGTATCCAACCATTACCTATTTACCCCGGGA</left_flank>
        <right_flank>ATTTTTGAAAAATCCGAATAAAAATCTTAAAAAGGTTTGTATCCATCTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCGCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTCCTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCAAGAAGAAGAAGAAGAAGCACTCAAACTCACACCCCACAGAGATCAAGAAGACGACGTTTCTTGCTTTTCTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTCTGCGTCTCTAATCTCTGGTATCCATGGATACCCCAGCCCTCTTTTTCTCTTTCCCCGTCTTCTTTTTGTTTTTTCTGGAAATTTTTTATTTTGACTACAAACTACAATTTTCAGGTAATCGATCCATCTCGGTATCCAACCATTACCTATTTACCCCGGGACATTTTTGAAAAATCCGAATAAAAATCTTAAAAAGGTTTGTATCCATCTGTGTGTCGGTTTATCCAGTTTCTTTTTTTTCCTACAGTAATCCTGACCAATCTACAGTAATCCCTACAACCAATGTCCAGATTGCGCCACAATCCGTACCCACACGGTTTGTCGTACAACCCATATGCTGGCAGCAGGTAAGGTGTCTTCCACGTGACATATCTCCCCAGGACTTGATTTTTGAAAAAAGTTGTCAACTACAAAAATGAAGCACTAGTTTTGATTAGTATATTCTGAAAATTTCAGACAAATTGAACAAATTTGAGTTAGGTTTTTAGATGCTCAAAGTTAGCCATTTTTTGAAATTTTTTTTTGAAATTTAGGTCAATTTGAAACTCAATTTTCAGTATTTTCTAAGTTGTTTCAACTTGTCAAACTGTGATTTCTGAATTTGGCGTATTTAAAAAACACTAGAAATTCTGTTTTCTAAAAAAAATAAGCAAATTTTAGCC</canonical>
            <polymorphic>CAATTTTCAGAGAAATCCAAATATTTTGAGATGCTTTTCCAGATTCTCAAACTTGATTTCTCCTTTTTTCTGATTCCTCTGTTTTTCTTTTTCGCCATTAGAGAGAGAAAAAAGAAAAAAGCAATCCATGGTGCGGTAGATGGGGACGCTGTCCTCTTCTTGCTCTTCTCTTTTCCTCTAACCACTCTCTCCAATTTGCACACTCTCTCGCTTCTGTGAGTGTCAAGAAGAAGAAGAAGAAGCACTCAAACTCACACCCCACAGAGATCAAGAAGACGACGTTTCTTGCTTTTCTCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTCTGCGTCTCTAATCTCTGGTATCCATGGATACCCCAGCCCTCTTTTTCTCTTTCCCCGTCTTCTTTTTGTTTTTTCTGGAAATTTTTTATTTTGACTACAAACTACAATTTTCAGGTAATCGATCCATCTCGGTATCCAACCATTACCTATTTACCCCGGGASATTTTTGAAAAATCCGAATAAAAATCTTAAAAAGGTTTGTATCCATCTGTGTGTCGGTTTATCCAGTTTCTTTTTTTTCCTACAGTAATCCTGACCAATCTACAGTAATCCCTACAACCAATGTCCAGATTGCGCCACAATCCGTACCCACACGGTTTGTCGTACAACCCATATGCTGGCAGCAGGTAAGGTGTCTTCCACGTGACATATCTCCCCAGGACTTGATTTTTGAAAAAAGTTGTCAACTACAAAAATGAAGCACTAGTTTTGATTAGTATATTCTGAAAATTTCAGACAAATTGAACAAATTTGAGTTAGGTTTTTAGATGCTCAAAGTTAGCCATTTTTTGAAATTTTTTTTTGAAATTTAGGTCAATTTGAAACTCAATTTTCAGTATTTTCTAAGTTGTTTCAACTTGTCAAACTGTGATTTCTGAATTTGGCGTATTTAAAAAACACTAGAAATTCTGTTTTCTAAAAAAAATAAGCAAATTTTAGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCCCTCTTTTTCTCTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTGGTTGTAGGGATTACTGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGCCCTCTTTTTCTCTTTCCCCGTCTTCTTTTTGTTTTTTCTGGAAATTTTTTATTTTGACTACAAACTACAATTTTCAGGTAATCGATCCATCTCGGTATCCAACCATTACCTATTTACCCCGGGACATTTTTGAAAAATCCGAATAAAAATCTTAAAAAGGTTTGTATCCATCTGTGTGTCGGTTTATCCAGTTTCTTTTTTTTCCTACAGTAATCCTGACCAATCTACAGTAATCCCTACAACCAA</canonical_amplicon>
		<polymorphic_amplicon>CAGCCCTCTTTTTCTCTTTCCCCGTCTTCTTTTTGTTTTTTCTGGAAATTTTTTATTTTGACTACAAACTACAATTTTCAGGTAATCGATCCATCTCGGTATCCAACCATTACCTATTTACCCCGGGASATTTTTGAAAAATCCGAATAAAAATCTTAAAAAGGTTTGTATCCATCTGTGTGTCGGTTTATCCAGTTTCTTTTTTTTCCTACAGTAATCCTGACCAATCTACAGTAATCCCTACAACCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23830</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>603009</contig_pos>
        <strand></strand>
        <context>tatctcattt[C/T]ctgaaagaga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTT</left_flank>
        <right_flank>CTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATTTTTGTCATAATA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATGTTGGCTGTTTGTTTTTATTAGAAACAAATGTTTACAAAATTGTTCTGAAAAAACCTCAAAATAAATTTGAAATCGAATCAAATTCGCTAAAAAGCGCGTTTTTGTATATTTTACTATAGCTATAGATGAAAGGAAAATTTAAAACTTTAAAATGTTTAAAGATTCACCAATGACAATCAGTTGTATCAATTGCATGGTGGCTTCGACATAACTAGAGCTGATGGAAGGATGGCAACCATTGGACACCATGGATACAACCTGTCCCACGAAGATAATCCATGGCAACAGTTTGAGATTGAAGAATGTGCAAGAATCTCAAGAGTGTGGAATTTGGAAGAAAGTGATGAGGAAGATGAGATTGAAAAGGGAGATGGTCAAGGGTATATCGAATGGATAAAGCGATATAGAAGAGAAGAAAGACGCAATATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTTCCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATTTTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAACCTTAACAATATACGATAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCATTATGTTGTCATCTTTATCTAATTTTGCACTTTTTTTTCAATATTTCAAAATAAATTGTTCTTGCTTTTTCCTTTCCTTTTTCCTTATTTGCATACATATATTACTGTGAAACTAGGCCACCCGACCCGCCAACTTTGAGCCCATGTATCTTGATTCTTGTGAGAGATATCAAAAAGTAATCAACTGATAAACTGCTTCTCATAATATCAGCAATATTCTATTAGTTTATTACTTTTTGTTATCTTTCACAGGAACTGAGATAATTGAGTTCAAAGTAATTGGACCTCCCGAGAGGTGAGAGGCAAAGAGGGGAGCACCTGT</canonical>
            <polymorphic>AAATGTTGGCTGTTTGTTTTTATTAGAAACAAATGTTTACAAAATTGTTCTGAAAAAACCTCAAAATAAATTTGAAATCGAATCAAATTCGCTAAAAAGCGCGTTTTTGTATATTTTACTATAGCTATAGATGAAAGGAAAATTTAAAACTTTAAAATGTTTAAAGATTCACCAATGACAATCAGTTGTATCAATTGCATGGTGGCTTCGACATAACTAGAGCTGATGGAAGGATGGCAACCATTGGACACCATGGATACAACCTGTCCCACGAAGATAATCCATGGCAACAGTTTGAGATTGAAGAATGTGCAAGAATCTCAAGAGTGTGGAATTTGGAAGAAAGTGATGAGGAAGATGAGATTGAAAAGGGAGATGGTCAAGGGTATATCGAATGGATAAAGCGATATAGAAGAGAAGAAAGACGCAATATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTTYCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATTTTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAACCTTAACAATATACGATAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCATTATGTTGTCATCTTTATCTAATTTTGCACTTTTTTTTCAATATTTCAAAATAAATTGTTCTTGCTTTTTCCTTTCCTTTTTCCTTATTTGCATACATATATTACTGTGAAACTAGGCCACCCGACCCGCCAACTTTGAGCCCATGTATCTTGATTCTTGTGAGAGATATCAAAAAGTAATCAACTGATAAACTGCTTCTCATAATATCAGCAATATTCTATTAGTTTATTACTTTTTGTTATCTTTCACAGGAACTGAGATAATTGAGTTCAAAGTAATTGGACCTCCCGAGAGGTGAGAGGCAAAGAGGGGAGCACCTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>322 179 178 149 138 34</canonical_bands>
                <polymorphic_bands>327 322 179 138 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTTTATGATTGTGTGGTGAAG</pcr_primer_p1>
		<pcr_primer_p2>TGATAAGAAAAACTGCTAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTTCCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATTTTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAACCTTAACAATATACGATAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCA</canonical_amplicon>
		<polymorphic_amplicon>ATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTTYCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATTTTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAACCTTAACAATATACGATAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23831</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>603047</contig_pos>
        <strand></strand>
        <context>cagataaaat[T/G]tttgtcataa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATTATCTCATTTCCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAAT</left_flank>
        <right_flank>TTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAAAATTGTTCTGAAAAAACCTCAAAATAAATTTGAAATCGAATCAAATTCGCTAAAAAGCGCGTTTTTGTATATTTTACTATAGCTATAGATGAAAGGAAAATTTAAAACTTTAAAATGTTTAAAGATTCACCAATGACAATCAGTTGTATCAATTGCATGGTGGCTTCGACATAACTAGAGCTGATGGAAGGATGGCAACCATTGGACACCATGGATACAACCTGTCCCACGAAGATAATCCATGGCAACAGTTTGAGATTGAAGAATGTGCAAGAATCTCAAGAGTGTGGAATTTGGAAGAAAGTGATGAGGAAGATGAGATTGAAAAGGGAGATGGTCAAGGGTATATCGAATGGATAAAGCGATATAGAAGAGAAGAAAGACGCAATATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTTCCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATTTTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAACCTTAACAATATACGATAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCATTATGTTGTCATCTTTATCTAATTTTGCACTTTTTTTTCAATATTTCAAAATAAATTGTTCTTGCTTTTTCCTTTCCTTTTTCCTTATTTGCATACATATATTACTGTGAAACTAGGCCACCCGACCCGCCAACTTTGAGCCCATGTATCTTGATTCTTGTGAGAGATATCAAAAAGTAATCAACTGATAAACTGCTTCTCATAATATCAGCAATATTCTATTAGTTTATTACTTTTTGTTATCTTTCACAGGAACTGAGATAATTGAGTTCAAAGTAATTGGACCTCCCGAGAGGTGAGAGGCAAAGAGGGGAGCACCTGTCTGTTTAAACTTATATATTTCAGTTCCTGTAATAGATA</canonical>
            <polymorphic>ACAAAATTGTTCTGAAAAAACCTCAAAATAAATTTGAAATCGAATCAAATTCGCTAAAAAGCGCGTTTTTGTATATTTTACTATAGCTATAGATGAAAGGAAAATTTAAAACTTTAAAATGTTTAAAGATTCACCAATGACAATCAGTTGTATCAATTGCATGGTGGCTTCGACATAACTAGAGCTGATGGAAGGATGGCAACCATTGGACACCATGGATACAACCTGTCCCACGAAGATAATCCATGGCAACAGTTTGAGATTGAAGAATGTGCAAGAATCTCAAGAGTGTGGAATTTGGAAGAAAGTGATGAGGAAGATGAGATTGAAAAGGGAGATGGTCAAGGGTATATCGAATGGATAAAGCGATATAGAAGAGAAGAAAGACGCAATATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTTCCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATKTTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAACCTTAACAATATACGATAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCATTATGTTGTCATCTTTATCTAATTTTGCACTTTTTTTTCAATATTTCAAAATAAATTGTTCTTGCTTTTTCCTTTCCTTTTTCCTTATTTGCATACATATATTACTGTGAAACTAGGCCACCCGACCCGCCAACTTTGAGCCCATGTATCTTGATTCTTGTGAGAGATATCAAAAAGTAATCAACTGATAAACTGCTTCTCATAATATCAGCAATATTCTATTAGTTTATTACTTTTTGTTATCTTTCACAGGAACTGAGATAATTGAGTTCAAAGTAATTGGACCTCCCGAGAGGTGAGAGGCAAAGAGGGGAGCACCTGTCTGTTTAAACTTATATATTTCAGTTCCTGTAATAGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>395 202 192 109 55 30 17</canonical_bands>
                <polymorphic_bands>395 311 192 55 30 17</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>209 154 140 100 83 55 55 52 48 33 26 17 15 9 4</canonical_bands>
                <polymorphic_bands>209 154 148 140 83 55 55 52 33 26 17 15 9 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTTTATGATTGTGTGGTGAAG</pcr_primer_p1>
		<pcr_primer_p2>TGATAAGAAAAACTGCTAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTTCCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATTTTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAACCTTAACAATATACGATAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCA</canonical_amplicon>
		<polymorphic_amplicon>ATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTTCCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATKTTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAACCTTAACAATATACGATAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23832</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>603127</contig_pos>
        <strand></strand>
        <context>atttgctcaa[C/A]cttaacaatA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAA</left_flank>
        <right_flank>CTTAACAATATACGATAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATAGCTATAGATGAAAGGAAAATTTAAAACTTTAAAATGTTTAAAGATTCACCAATGACAATCAGTTGTATCAATTGCATGGTGGCTTCGACATAACTAGAGCTGATGGAAGGATGGCAACCATTGGACACCATGGATACAACCTGTCCCACGAAGATAATCCATGGCAACAGTTTGAGATTGAAGAATGTGCAAGAATCTCAAGAGTGTGGAATTTGGAAGAAAGTGATGAGGAAGATGAGATTGAAAAGGGAGATGGTCAAGGGTATATCGAATGGATAAAGCGATATAGAAGAGAAGAAAGACGCAATATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTTCCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATTTTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAACCTTAACAATATACGATAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCATTATGTTGTCATCTTTATCTAATTTTGCACTTTTTTTTCAATATTTCAAAATAAATTGTTCTTGCTTTTTCCTTTCCTTTTTCCTTATTTGCATACATATATTACTGTGAAACTAGGCCACCCGACCCGCCAACTTTGAGCCCATGTATCTTGATTCTTGTGAGAGATATCAAAAAGTAATCAACTGATAAACTGCTTCTCATAATATCAGCAATATTCTATTAGTTTATTACTTTTTGTTATCTTTCACAGGAACTGAGATAATTGAGTTCAAAGTAATTGGACCTCCCGAGAGGTGAGAGGCAAAGAGGGGAGCACCTGTCTGTTTAAACTTATATATTTCAGTTCCTGTAATAGATATCAAAATATGGTCAACTAACAAACTTTTTCTGATATTATGATAAAAAAATTATCAGTTGACACCTTTGTGGTATCTCTTA</canonical>
            <polymorphic>CTATAGCTATAGATGAAAGGAAAATTTAAAACTTTAAAATGTTTAAAGATTCACCAATGACAATCAGTTGTATCAATTGCATGGTGGCTTCGACATAACTAGAGCTGATGGAAGGATGGCAACCATTGGACACCATGGATACAACCTGTCCCACGAAGATAATCCATGGCAACAGTTTGAGATTGAAGAATGTGCAAGAATCTCAAGAGTGTGGAATTTGGAAGAAAGTGATGAGGAAGATGAGATTGAAAAGGGAGATGGTCAAGGGTATATCGAATGGATAAAGCGATATAGAAGAGAAGAAAGACGCAATATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTTCCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATTTTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAAMCTTAACAATATACGATAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCATTATGTTGTCATCTTTATCTAATTTTGCACTTTTTTTTCAATATTTCAAAATAAATTGTTCTTGCTTTTTCCTTTCCTTTTTCCTTATTTGCATACATATATTACTGTGAAACTAGGCCACCCGACCCGCCAACTTTGAGCCCATGTATCTTGATTCTTGTGAGAGATATCAAAAAGTAATCAACTGATAAACTGCTTCTCATAATATCAGCAATATTCTATTAGTTTATTACTTTTTGTTATCTTTCACAGGAACTGAGATAATTGAGTTCAAAGTAATTGGACCTCCCGAGAGGTGAGAGGCAAAGAGGGGAGCACCTGTCTGTTTAAACTTATATATTTCAGTTCCTGTAATAGATATCAAAATATGGTCAACTAACAAACTTTTTCTGATATTATGATAAAAAAATTATCAGTTGACACCTTTGTGGTATCTCTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTTTATGATTGTGTGGTGAAG</pcr_primer_p1>
		<pcr_primer_p2>TGATAAGAAAAACTGCTAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTTCCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATTTTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAACCTTAACAATATACGATAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCA</canonical_amplicon>
		<polymorphic_amplicon>ATCTTTATGATTGTGTGGTGAAGCAAACTAGAAGAGCTCTCTTAACTTTGAGTTCAATTATCTCATTTCCTGAAAGAGATATCAGAAAGTGGTCAACAGATAAAATTTTTGTCATAATATCACCAATATTTTATCAGTTGACAAATGTTTGATATCTATTACAGGAAATGAGATATATTTGCTCAAMCTTAACAATATACGATAATTCCTGGAATTTCTGGATTTTTTCTAGCAGTTTTTCTTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23833</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>604593</contig_pos>
        <strand>+</strand>
        <context>CACCCCACCT[A/T]CTTTGACCCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCT</left_flank>
        <right_flank>CTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGTCTCCTGGAAATAAATGTTTTATTGTTTTTACTGATAATGTTTCTTATTTTTAGATTTTTATTTTTCCAGAATTTTCCAAATTTATTTTTTTTCCAATTTGGCGAATTTTTCCAAAAAATAAAATTTTGTTCAAAAAAAAAGGTGTGACTCGATTTGATAAAGAAGAATAACATGTTTATTTTTTTGGTAAATACATACATACATAAAAAATAATGTTCTGTTTATTTCATACTTTTTGAATGTAAACCGGAAAATAATTTTTTTTTTTTGGAATTCAAAATTTTCGATCCCTAAAGTTTAGACTCAAAAATCTCAATTTCCAGAGAAGATTAAAAAAAAGTGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTT</canonical>
            <polymorphic>TTTTGTCTCCTGGAAATAAATGTTTTATTGTTTTTACTGATAATGTTTCTTATTTTTAGATTTTTATTTTTCCAGAATTTTCCAAATTTATTTTTTTTCCAATTTGGCGAATTTTTCCAAAAAATAAAATTTTGTTCAAAAAAAAAGGTGTGACTCGATTTGATAAAGAAGAATAACATGTTTATTTTTTTGGTAAATACATACATACATAAAAAATAATGTTCTGTTTATTTCATACTTTTTGAATGTAAACCGGAAAATAATTTTTTTTTTTTGGAATTCAAAATTTTCGATCCCTAAAGTTTAGACTCAAAAATCTCAATTTCCAGAGAAGATTAAAAAAAAGTGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTWCTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTCAACTAGTAAAATGTAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAGTGGTCACTTCGTAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>TGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTT</canonical_amplicon>
		<polymorphic_amplicon>TGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTWCTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23834</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>604629</contig_pos>
        <strand>+</strand>
        <context>TAAATAAGAT[A/T]WTAAAAAAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGAT</left_flank>
        <right_flank>TTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGATAATGTTTCTTATTTTTAGATTTTTATTTTTCCAGAATTTTCCAAATTTATTTTTTTTCCAATTTGGCGAATTTTTCCAAAAAATAAAATTTTGTTCAAAAAAAAAGGTGTGACTCGATTTGATAAAGAAGAATAACATGTTTATTTTTTTGGTAAATACATACATACATAAAAAATAATGTTCTGTTTATTTCATACTTTTTGAATGTAAACCGGAAAATAATTTTTTTTTTTTGGAATTCAAAATTTTCGATCCCTAAAGTTTAGACTCAAAAATCTCAATTTCCAGAGAAGATTAAAAAAAAGTGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCA</canonical>
            <polymorphic>CTGATAATGTTTCTTATTTTTAGATTTTTATTTTTCCAGAATTTTCCAAATTTATTTTTTTTCCAATTTGGCGAATTTTTCCAAAAAATAAAATTTTGTTCAAAAAAAAAGGTGTGACTCGATTTGATAAAGAAGAATAACATGTTTATTTTTTTGGTAAATACATACATACATAAAAAATAATGTTCTGTTTATTTCATACTTTTTGAATGTAAACCGGAAAATAATTTTTTTTTTTTGGAATTCAAAATTTTCGATCCCTAAAGTTTAGACTCAAAAATCTCAATTTCCAGAGAAGATTAAAAAAAAGTGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATWTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 282 148 68</canonical_bands>
                <polymorphic_bands>570 282 148</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGTCAACTAGTAAAATGTAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAGTGGTCACTTCGTAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>TGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTT</canonical_amplicon>
		<polymorphic_amplicon>TGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATWTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23835</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>604848</contig_pos>
        <strand>+</strand>
        <context>TAGTAAATTT[C/T]WAAAAARRTA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTT</left_flank>
        <right_flank>AAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAATAATTTTTTTTTTTTGGAATTCAAAATTTTCGATCCCTAAAGTTTAGACTCAAAAATCTCAATTTCCAGAGAAGATTAAAAAAAAGTGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTTTCGTTGAAAAATCGGAATTTTTGGTTCCAAAAAAGCTGAGAACTTTCTAGAAAAAGGGCTAAAATTGTGATGGAATTTGATAAAAAGCTCTGAAACTTAAAAACTAGCCAAAAAATTGGATTATTTGAAAGTTTTTAGAAAATTCATAATTCCCAAAAAATTCAAATTTTCTAAAATTCCATTTTAATGCATTTCCTGTCTT</canonical>
            <polymorphic>GAAAATAATTTTTTTTTTTTGGAATTCAAAATTTTCGATCCCTAAAGTTTAGACTCAAAAATCTCAATTTCCAGAGAAGATTAAAAAAAAGTGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTYAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTTTCGTTGAAAAATCGGAATTTTTGGTTCCAAAAAAGCTGAGAACTTTCTAGAAAAAGGGCTAAAATTGTGATGGAATTTGATAAAAAGCTCTGAAACTTAAAAACTAGCCAAAAAATTGGATTATTTGAAAGTTTTTAGAAAATTCATAATTCCCAAAAAATTCAAATTTTCTAAAATTCCATTTTAATGCATTTCCTGTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 283 148 68</canonical_bands>
                <polymorphic_bands>649 283 68</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>378 164 108 87 81 68 40 37 19 18</canonical_bands>
                <polymorphic_bands>378 164 108 87 81 68 59 37 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTAAAATGTTGACTGAGAGC</pcr_primer_p1>
		<pcr_primer_p2>ACGGTCCATATCTTGGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTYAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23836</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>604849</contig_pos>
        <strand>+</strand>
        <context>AGTAAATTTY[A/T]AAAAARRTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTA</left_flank>
        <right_flank>AAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATAATTTTTTTTTTTTGGAATTCAAAATTTTCGATCCCTAAAGTTTAGACTCAAAAATCTCAATTTCCAGAGAAGATTAAAAAAAAGTGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTTTCGTTGAAAAATCGGAATTTTTGGTTCCAAAAAAGCTGAGAACTTTCTAGAAAAAGGGCTAAAATTGTGATGGAATTTGATAAAAAGCTCTGAAACTTAAAAACTAGCCAAAAAATTGGATTATTTGAAAGTTTTTAGAAAATTCATAATTCCCAAAAAATTCAAATTTTCTAAAATTCCATTTTAATGCATTTCCTGTCTTT</canonical>
            <polymorphic>AAAATAATTTTTTTTTTTTGGAATTCAAAATTTTCGATCCCTAAAGTTTAGACTCAAAAATCTCAATTTCCAGAGAAGATTAAAAAAAAGTGGTCAACTAGTAAAATGTAGAAAATTTAATTCTCTATATTTTTTTAGTTGATTACTTTATTGTATCTTTTTTAGAAATTGTGATAATTAGGGTCAAAGTAGGTAGGGTCCCCTTCCATCTTCCTCTCGGCTGTCGCGCCTTCCACCCCACCTACTTTGACCCTAGTTATTTCAATTTCTAAATAAGATTTTAAAAAAGTGGTCAATTACTAAAATGTAGGAAATTCAATGGTCTATATTTTACGAAGTGACCACTTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAWAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGTGGAAAGAGCGGTCTCATGGAGCGCCATGAGGGGGGAGGGTGCCGCCCAACCCACCTACTTGGATCCTAATTATCTCAATTTCTAGAATAGATACCAAAAAGTGATCAGCTAATAAAATGCAGGAAATTTATTTTTACACATTTTACTAGTTGATCACTTTTTTGTAACTTTTATAGAAATGGAGATAATTTGAGCCAAAGTAAACTGATTTTTTTCGTTGAAAAATCGGAATTTTTGGTTCCAAAAAAGCTGAGAACTTTCTAGAAAAAGGGCTAAAATTGTGATGGAATTTGATAAAAAGCTCTGAAACTTAAAAACTAGCCAAAAAATTGGATTATTTGAAAGTTTTTAGAAAATTCATAATTCCCAAAAAATTCAAATTTTCTAAAATTCCATTTTAATGCATTTCCTGTCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 282 148 68</canonical_bands>
                <polymorphic_bands>650 282 68</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>378 164 108 87 80 68 40 37 19 19</canonical_bands>
                <polymorphic_bands>378 164 108 87 80 68 59 37 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTAAAATGTTGACTGAGAGC</pcr_primer_p1>
		<pcr_primer_p2>ACGGTCCATATCTTGGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAAAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTAAAATGTTGACTGAGAGCCGAGTTATGGACGGTGGAAAGAGCGGTCCCCCGGTGCGCCAGGAGGGGGGAGAGAGGGCGCCACCCACCCCAACTGTTTTGACCCTAATTAACTCAATTTCTCGAAAAGATACCTAAAAGTAGTAAATTTAWAAAAAGTTAGGAAATTTAATTTTACACATTTTACTAGTTGACCACGTTTTTGTATCTTTACCGAGAACCAAGATATGGACCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23837</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>642593</contig_pos>
        <strand>-</strand>
        <context>CTCGTTTTCG[G/T]AATTTTATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATCAACAACAATTCTTTTGAAGTTTTGCAATAAAAAACCCTCGTTTTCG</left_flank>
        <right_flank>AATTTTATGATCGAAAAAATATTGTTCGAGGGAACAAGGAGCTGTCCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCACCAATTCGTCTTCCCAAGTGGGACCACTCATCCAAGATGGCCAGGAATCATGCATGGGCAATTAGATGATCAATATTGTCAAGAAGGACGTATAAATCCAAACCGGAAAATGTACGCTTGTGGAAAATTGGCTACTTAATTACCTTGTATAGTTAATTGGTTAATTAATAAAATGATTGCTGAAAAATTTTAAAATTGACTGCCAACTTCAAGGAAATTCATCTGGCTTCCTGTGAAAGATATCAAAAAGTGGTCAACTGATAAGATATTGATAATTTTACAATAATCAATTTATCAGTTGACAATTTTTTGATATCTTCCACAGGAAACAATATAATTGAGCTCAAAGTTGATGTGTCTGGTATTTTCCATGAAAGCAAATACGACAATTTGAAAATAATTATTTAACAGTTCATTTTTGGATTTTTAGAGTTCTGAATTTCAAAAATCAACAACAATTCTTTTGAAGTTTTGCAATAAAAAACCCTCGTTTTCGAAATTTTATGATCGAAAAAATATTGTTCGAGGGAACAAGGAGCTGTCCAATGAAAGTATAAAAAGTCATCGATTCGTAACTTTTTCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTTCGTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCATGGCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGAGAGAAAACCAACTGCCCAACCGACTGGATGCTATTCAAACGAACACAAGGCAATTGGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAG</canonical>
            <polymorphic>GCACCAATTCGTCTTCCCAAGTGGGACCACTCATCCAAGATGGCCAGGAATCATGCATGGGCAATTAGATGATCAATATTGTCAAGAAGGACGTATAAATCCAAACCGGAAAATGTACGCTTGTGGAAAATTGGCTACTTAATTACCTTGTATAGTTAATTGGTTAATTAATAAAATGATTGCTGAAAAATTTTAAAATTGACTGCCAACTTCAAGGAAATTCATCTGGCTTCCTGTGAAAGATATCAAAAAGTGGTCAACTGATAAGATATTGATAATTTTACAATAATCAATTTATCAGTTGACAATTTTTTGATATCTTCCACAGGAAACAATATAATTGAGCTCAAAGTTGATGTGTCTGGTATTTTCCATGAAAGCAAATACGACAATTTGAAAATAATTATTTAACAGTTCATTTTTGGATTTTTAGAGTTCTGAATTTCAAAAATCAACAACAATTCTTTTGAAGTTTTGCAATAAAAAACCCTCGTTTTCGKAATTTTATGATCGAAAAAATATTGTTCGAGGGAACAAGGAGCTGTCCAATGAAAGTATAAAAAGTCATCGATTCGTAACTTTTTCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTTCGTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCATGGCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGAGAGAAAACCAACTGCCCAACCGACTGGATGCTATTCAAACGAACACAAGGCAATTGGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>280 222 188 115 105 60 30</canonical_bands>
                <polymorphic_bands>280 222 188 165 115 30</polymorphic_bands>
            </assay>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 263 168 42 15 14</canonical_bands>
                <polymorphic_bands>512 263 168 42 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAAAGCAAATACGACAATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTGAAGAAATGAAGAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>ATGAAAGCAAATACGACAATTTGAAAATAATTATTTAACAGTTCATTTTTGGATTTTTAGAGTTCTGAATTTCAAAAATCAACAACAATTCTTTTGAAGTTTTGCAATAAAAAACCCTCGTTTTCGAAATTTTATGATCGAAAAAATATTGTTCGAGGGAACAAGGAGCTGTCCAATGAAAGTATAAAAAGTCATCGATTCGTAACTTTTTCTTCATTTCTTCAGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATGAAAGCAAATACGACAATTTGAAAATAATTATTTAACAGTTCATTTTTGGATTTTTAGAGTTCTGAATTTCAAAAATCAACAACAATTCTTTTGAAGTTTTGCAATAAAAAACCCTCGTTTTCGKAATTTTATGATCGAAAAAATATTGTTCGAGGGAACAAGGAGCTGTCCAATGAAAGTATAAAAAGTCATCGATTCGTAACTTTTTCTTCATTTCTTCAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23838</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>642634</contig_pos>
        <strand>-</strand>
        <context>GGAACAAGGA[C/T/G/A]CTGTCCAATG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T/G/A</alleles>
        <left_flank>TCGTTTTCGAAATTTTATGATCGAAAAAATATTGTTCGAGGGAACAAGGA</left_flank>
        <right_flank>CTGTCCAATGAAAGTATAAAAAGTCATCGATTCGTAACTTTTTCTTCATT</right_flank>
        <qual_score>134</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCCAGGAATCATGCATGGGCAATTAGATGATCAATATTGTCAAGAAGGACGTATAAATCCAAACCGGAAAATGTACGCTTGTGGAAAATTGGCTACTTAATTACCTTGTATAGTTAATTGGTTAATTAATAAAATGATTGCTGAAAAATTTTAAAATTGACTGCCAACTTCAAGGAAATTCATCTGGCTTCCTGTGAAAGATATCAAAAAGTGGTCAACTGATAAGATATTGATAATTTTACAATAATCAATTTATCAGTTGACAATTTTTTGATATCTTCCACAGGAAACAATATAATTGAGCTCAAAGTTGATGTGTCTGGTATTTTCCATGAAAGCAAATACGACAATTTGAAAATAATTATTTAACAGTTCATTTTTGGATTTTTAGAGTTCTGAATTTCAAAAATCAACAACAATTCTTTTGAAGTTTTGCAATAAAAAACCCTCGTTTTCGAAATTTTATGATCGAAAAAATATTGTTCGAGGGAACAAGGAGCTGTCCAATGAAAGTATAAAAAGTCATCGATTCGTAACTTTTTCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTTCGTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCATGGCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGAGAGAAAACCAACTGCCCAACCGACTGGATGCTATTCAAACGAACACAAGGCAATTGGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGAC</canonical>
            <polymorphic>GGCCAGGAATCATGCATGGGCAATTAGATGATCAATATTGTCAAGAAGGACGTATAAATCCAAACCGGAAAATGTACGCTTGTGGAAAATTGGCTACTTAATTACCTTGTATAGTTAATTGGTTAATTAATAAAATGATTGCTGAAAAATTTTAAAATTGACTGCCAACTTCAAGGAAATTCATCTGGCTTCCTGTGAAAGATATCAAAAAGTGGTCAACTGATAAGATATTGATAATTTTACAATAATCAATTTATCAGTTGACAATTTTTTGATATCTTCCACAGGAAACAATATAATTGAGCTCAAAGTTGATGTGTCTGGTATTTTCCATGAAAGCAAATACGACAATTTGAAAATAATTATTTAACAGTTCATTTTTGGATTTTTAGAGTTCTGAATTTCAAAAATCAACAACAATTCTTTTGAAGTTTTGCAATAAAAAACCCTCGTTTTCGAAATTTTATGATCGAAAAAATATTGTTCGAGGGAACAAGGAYCTGTCCAATGAAAGTATAAAAAGTCATCGATTCGTAACTTTTTCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTTCGTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCATGGCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGAGAGAAAACCAACTGCCCAACCGACTGGATGCTATTCAAACGAACACAAGGCAATTGGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>500 304 196</canonical_bands>
                <polymorphic_bands>696 304</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>205 196 116 112 95 91 56 54 54 7 6 6 2</canonical_bands>
                <polymorphic_bands>308 205 116 95 91 56 54 54 7 6 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAAAGCAAATACGACAATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTGAAGAAATGAAGAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>ATGAAAGCAAATACGACAATTTGAAAATAATTATTTAACAGTTCATTTTTGGATTTTTAGAGTTCTGAATTTCAAAAATCAACAACAATTCTTTTGAAGTTTTGCAATAAAAAACCCTCGTTTTCGAAATTTTATGATCGAAAAAATATTGTTCGAGGGAACAAGGAGCTGTCCAATGAAAGTATAAAAAGTCATCGATTCGTAACTTTTTCTTCATTTCTTCAGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATGAAAGCAAATACGACAATTTGAAAATAATTATTTAACAGTTCATTTTTGGATTTTTAGAGTTCTGAATTTCAAAAATCAACAACAATTCTTTTGAAGTTTTGCAATAAAAAACCCTCGTTTTCGAAATTTTATGATCGAAAAAATATTGTTCGAGGGAACAAGGAYCTGTCCAATGAAAGTATAAAAAGTCATCGATTCGTAACTTTTTCTTCATTTCTTCAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23839</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>642727</contig_pos>
        <strand>-</strand>
        <context>TTTTCTGTTT[A/G/C/T]GTCTGCCCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G/C/T</alleles>
        <left_flank>TCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTT</left_flank>
        <right_flank>GTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACTTAATTACCTTGTATAGTTAATTGGTTAATTAATAAAATGATTGCTGAAAAATTTTAAAATTGACTGCCAACTTCAAGGAAATTCATCTGGCTTCCTGTGAAAGATATCAAAAAGTGGTCAACTGATAAGATATTGATAATTTTACAATAATCAATTTATCAGTTGACAATTTTTTGATATCTTCCACAGGAAACAATATAATTGAGCTCAAAGTTGATGTGTCTGGTATTTTCCATGAAAGCAAATACGACAATTTGAAAATAATTATTTAACAGTTCATTTTTGGATTTTTAGAGTTCTGAATTTCAAAAATCAACAACAATTCTTTTGAAGTTTTGCAATAAAAAACCCTCGTTTTCGAAATTTTATGATCGAAAAAATATTGTTCGAGGGAACAAGGAGCTGTCCAATGAAAGTATAAAAAGTCATCGATTCGTAACTTTTTCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTTCGTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCATGGCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGAGAGAAAACCAACTGCCCAACCGACTGGATGCTATTCAAACGAACACAAGGCAATTGGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACATAGCAGTGAACCATATGGTGCAAATCAATAATCTTGTTGTAGCTTTTGAAAT</canonical>
            <polymorphic>CTACTTAATTACCTTGTATAGTTAATTGGTTAATTAATAAAATGATTGCTGAAAAATTTTAAAATTGACTGCCAACTTCAAGGAAATTCATCTGGCTTCCTGTGAAAGATATCAAAAAGTGGTCAACTGATAAGATATTGATAATTTTACAATAATCAATTTATCAGTTGACAATTTTTTGATATCTTCCACAGGAAACAATATAATTGAGCTCAAAGTTGATGTGTCTGGTATTTTCCATGAAAGCAAATACGACAATTTGAAAATAATTATTTAACAGTTCATTTTTGGATTTTTAGAGTTCTGAATTTCAAAAATCAACAACAATTCTTTTGAAGTTTTGCAATAAAAAACCCTCGTTTTCGAAATTTTATGATCGAAAAAATATTGTTCGAGGGAACAAGGAGCTGTCCAATGAAAGTATAAAAAGTCATCGATTCGTAACTTTTTCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTTRGTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCATGGCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGAGAGAAAACCAACTGCCCAACCGACTGGATGCTATTCAAACGAACACAAGGCAATTGGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACATAGCAGTGAACCATATGGTGCAAATCAATAATCTTGTTGTAGCTTTTGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTAACTTTTTCTTCATTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>TCGTTTGAATAGCATCCAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTAACTTTTTCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTTCGTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCATGGCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGAGAGAAAACCAACTGCCCAACCGACTGGATGCTATTCAAACGA</canonical_amplicon>
		<polymorphic_amplicon>CGTAACTTTTTCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTTRGTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCATGGCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGAGAGAAAACCAACTGCCCAACCGACTGGATGCTATTCAAACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23840</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>642824</contig_pos>
        <strand>-</strand>
        <context>CCACGGCCAT[C/T/G/A]GCGGTCGACC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T/G/A</alleles>
        <left_flank>ACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCAT</left_flank>
        <right_flank>GCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTGTGAAAGATATCAAAAAGTGGTCAACTGATAAGATATTGATAATTTTACAATAATCAATTTATCAGTTGACAATTTTTTGATATCTTCCACAGGAAACAATATAATTGAGCTCAAAGTTGATGTGTCTGGTATTTTCCATGAAAGCAAATACGACAATTTGAAAATAATTATTTAACAGTTCATTTTTGGATTTTTAGAGTTCTGAATTTCAAAAATCAACAACAATTCTTTTGAAGTTTTGCAATAAAAAACCCTCGTTTTCGAAATTTTATGATCGAAAAAATATTGTTCGAGGGAACAAGGAGCTGTCCAATGAAAGTATAAAAAGTCATCGATTCGTAACTTTTTCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTTCGTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCATGGCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGAGAGAAAACCAACTGCCCAACCGACTGGATGCTATTCAAACGAACACAAGGCAATTGGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACATAGCAGTGAACCATATGGTGCAAATCAATAATCTTGTTGTAGCTTTTGAAATCCCAAATTTTCCAGATGCGGGGCTGAAATTAATCCATCAAAATGGGTTCCAACAGGCATCTCTCTGGCTTGGCGCCAAAAGAAAGGCATCATGTCCA</canonical>
            <polymorphic>TCCTGTGAAAGATATCAAAAAGTGGTCAACTGATAAGATATTGATAATTTTACAATAATCAATTTATCAGTTGACAATTTTTTGATATCTTCCACAGGAAACAATATAATTGAGCTCAAAGTTGATGTGTCTGGTATTTTCCATGAAAGCAAATACGACAATTTGAAAATAATTATTTAACAGTTCATTTTTGGATTTTTAGAGTTCTGAATTTCAAAAATCAACAACAATTCTTTTGAAGTTTTGCAATAAAAAACCCTCGTTTTCGAAATTTTATGATCGAAAAAATATTGTTCGAGGGAACAAGGAGCTGTCCAATGAAAGTATAAAAAGTCATCGATTCGTAACTTTTTCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTTCGTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCATYGCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGAGAGAAAACCAACTGCCCAACCGACTGGATGCTATTCAAACGAACACAAGGCAATTGGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACATAGCAGTGAACCATATGGTGCAAATCAATAATCTTGTTGTAGCTTTTGAAATCCCAAATTTTCCAGATGCGGGGCTGAAATTAATCCATCAAAATGGGTTCCAACAGGCATCTCTCTGGCTTGGCGCCAAAAGAAAGGCATCATGTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>458 430 60 42 10</canonical_bands>
                <polymorphic_bands>458 430 102 10</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>504 465 19 6 6</canonical_bands>
                <polymorphic_bands>510 465 19 6</polymorphic_bands>
            </assay>
            <assay>
                <site>CCATGG</site>
                <isoschizomers>
                    <enzyme>Bsp19I</enzyme>
                    <enzyme>NcoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 484 12</canonical_bands>
                <polymorphic_bands>516 484</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>504 484 12</canonical_bands>
                <polymorphic_bands>516 484</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>504 484 6 6</canonical_bands>
                <polymorphic_bands>510 484 6</polymorphic_bands>
            </assay>
            <assay>
                <site>CCANNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>BstXI</enzyme>
                </isoschizomers>
                <canonical_bands>497 257 114 76 56</canonical_bands>
                <polymorphic_bands>573 257 114 56</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>496 343 142 12 7</canonical_bands>
                <polymorphic_bands>508 343 142 7</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>495 359 88 58</canonical_bands>
                <polymorphic_bands>854 88 58</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTAACTTTTTCTTCATTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>TCGTTTGAATAGCATCCAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTAACTTTTTCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTTCGTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCATGGCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGAGAGAAAACCAACTGCCCAACCGACTGGATGCTATTCAAACGA</canonical_amplicon>
		<polymorphic_amplicon>CGTAACTTTTTCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTTCGTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCATYGCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGAGAGAAAACCAACTGCCCAACCGACTGGATGCTATTCAAACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23841</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>643000</contig_pos>
        <strand>-</strand>
        <context>TTTTGTTGGC[G/T/A/C]YATTRAACCA</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T/A/C</alleles>
        <left_flank>ACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGC</left_flank>
        <right_flank>GATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAACAGTTCATTTTTGGATTTTTAGAGTTCTGAATTTCAAAAATCAACAACAATTCTTTTGAAGTTTTGCAATAAAAAACCCTCGTTTTCGAAATTTTATGATCGAAAAAATATTGTTCGAGGGAACAAGGAGCTGTCCAATGAAAGTATAAAAAGTCATCGATTCGTAACTTTTTCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTTCGTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCATGGCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGAGAGAAAACCAACTGCCCAACCGACTGGATGCTATTCAAACGAACACAAGGCAATTGGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACATAGCAGTGAACCATATGGTGCAAATCAATAATCTTGTTGTAGCTTTTGAAATCCCAAATTTTCCAGATGCGGGGCTGAAATTAATCCATCAAAATGGGTTCCAACAGGCATCTCTCTGGCTTGGCGCCAAAAGAAAGGCATCATGTCCACGTGCTGGAATATGTGCTCCAATCGACACATTCGAATGGACTGATGGACAAACAACGGGAACCGATGGGTTCAATTGGTTTTCTCATCCAGGTGACGTTCAACCGGATGGCAAGTGGAGAAATGATTGGGGGTGAGTTGGAATCACATGACCAGCAGTAGTGCCGTATTGTAGATC</canonical>
            <polymorphic>TTAACAGTTCATTTTTGGATTTTTAGAGTTCTGAATTTCAAAAATCAACAACAATTCTTTTGAAGTTTTGCAATAAAAAACCCTCGTTTTCGAAATTTTATGATCGAAAAAATATTGTTCGAGGGAACAAGGAGCTGTCCAATGAAAGTATAAAAAGTCATCGATTCGTAACTTTTTCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTTCGTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCATGGCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGAGAGAAAACCAACTGCCCAACCGACTGGATGCTATTCAAACGAACACAAGGCAATTGGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCKGATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACATAGCAGTGAACCATATGGTGCAAATCAATAATCTTGTTGTAGCTTTTGAAATCCCAAATTTTCCAGATGCGGGGCTGAAATTAATCCATCAAAATGGGTTCCAACAGGCATCTCTCTGGCTTGGCGCCAAAAGAAAGGCATCATGTCCACGTGCTGGAATATGTGCTCCAATCGACACATTCGAATGGACTGATGGACAAACAACGGGAACCGATGGGTTCAATTGGTTTTCTCATCCAGGTGACGTTCAACCGGATGGCAAGTGGAGAAATGATTGGGGGTGAGTTGGAATCACATGACCAGCAGTAGTGCCGTATTGTAGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGTGTTAGGGTAAGAGAGACT</pcr_primer_p1>
		<pcr_primer_p2>TGTACCATAAGATTATTCCAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACA</canonical_amplicon>
		<polymorphic_amplicon>GGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCKGATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23842</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>643001</contig_pos>
        <strand>-</strand>
        <context>TTTGTTGGCK[C/T/G/A]ATTRAACCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T/G/A</alleles>
        <left_flank>CTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCA</left_flank>
        <right_flank>ATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACAGTTCATTTTTGGATTTTTAGAGTTCTGAATTTCAAAAATCAACAACAATTCTTTTGAAGTTTTGCAATAAAAAACCCTCGTTTTCGAAATTTTATGATCGAAAAAATATTGTTCGAGGGAACAAGGAGCTGTCCAATGAAAGTATAAAAAGTCATCGATTCGTAACTTTTTCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTTCGTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCATGGCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGAGAGAAAACCAACTGCCCAACCGACTGGATGCTATTCAAACGAACACAAGGCAATTGGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACATAGCAGTGAACCATATGGTGCAAATCAATAATCTTGTTGTAGCTTTTGAAATCCCAAATTTTCCAGATGCGGGGCTGAAATTAATCCATCAAAATGGGTTCCAACAGGCATCTCTCTGGCTTGGCGCCAAAAGAAAGGCATCATGTCCACGTGCTGGAATATGTGCTCCAATCGACACATTCGAATGGACTGATGGACAAACAACGGGAACCGATGGGTTCAATTGGTTTTCTCATCCAGGTGACGTTCAACCGGATGGCAAGTGGAGAAATGATTGGGGGTGAGTTGGAATCACATGACCAGCAGTAGTGCCGTATTGTAGATCT</canonical>
            <polymorphic>TAACAGTTCATTTTTGGATTTTTAGAGTTCTGAATTTCAAAAATCAACAACAATTCTTTTGAAGTTTTGCAATAAAAAACCCTCGTTTTCGAAATTTTATGATCGAAAAAATATTGTTCGAGGGAACAAGGAGCTGTCCAATGAAAGTATAAAAAGTCATCGATTCGTAACTTTTTCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTTCGTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCATGGCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGAGAGAAAACCAACTGCCCAACCGACTGGATGCTATTCAAACGAACACAAGGCAATTGGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAYATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACATAGCAGTGAACCATATGGTGCAAATCAATAATCTTGTTGTAGCTTTTGAAATCCCAAATTTTCCAGATGCGGGGCTGAAATTAATCCATCAAAATGGGTTCCAACAGGCATCTCTCTGGCTTGGCGCCAAAAGAAAGGCATCATGTCCACGTGCTGGAATATGTGCTCCAATCGACACATTCGAATGGACTGATGGACAAACAACGGGAACCGATGGGTTCAATTGGTTTTCTCATCCAGGTGACGTTCAACCGGATGGCAAGTGGAGAAATGATTGGGGGTGAGTTGGAATCACATGACCAGCAGTAGTGCCGTATTGTAGATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGTGTTAGGGTAAGAGAGACT</pcr_primer_p1>
		<pcr_primer_p2>TGTACCATAAGATTATTCCAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACA</canonical_amplicon>
		<polymorphic_amplicon>GGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAYATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23843</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>643005</contig_pos>
        <strand>-</strand>
        <context>TTGGCKYATT[A/G/T/C]AACCATRRCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G/T/C</alleles>
        <left_flank>AAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATT</left_flank>
        <right_flank>AACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTCATTTTTGGATTTTTAGAGTTCTGAATTTCAAAAATCAACAACAATTCTTTTGAAGTTTTGCAATAAAAAACCCTCGTTTTCGAAATTTTATGATCGAAAAAATATTGTTCGAGGGAACAAGGAGCTGTCCAATGAAAGTATAAAAAGTCATCGATTCGTAACTTTTTCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTTCGTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCATGGCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGAGAGAAAACCAACTGCCCAACCGACTGGATGCTATTCAAACGAACACAAGGCAATTGGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACATAGCAGTGAACCATATGGTGCAAATCAATAATCTTGTTGTAGCTTTTGAAATCCCAAATTTTCCAGATGCGGGGCTGAAATTAATCCATCAAAATGGGTTCCAACAGGCATCTCTCTGGCTTGGCGCCAAAAGAAAGGCATCATGTCCACGTGCTGGAATATGTGCTCCAATCGACACATTCGAATGGACTGATGGACAAACAACGGGAACCGATGGGTTCAATTGGTTTTCTCATCCAGGTGACGTTCAACCGGATGGCAAGTGGAGAAATGATTGGGGGTGAGTTGGAATCACATGACCAGCAGTAGTGCCGTATTGTAGATCTCTAA</canonical>
            <polymorphic>AGTTCATTTTTGGATTTTTAGAGTTCTGAATTTCAAAAATCAACAACAATTCTTTTGAAGTTTTGCAATAAAAAACCCTCGTTTTCGAAATTTTATGATCGAAAAAATATTGTTCGAGGGAACAAGGAGCTGTCCAATGAAAGTATAAAAAGTCATCGATTCGTAACTTTTTCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTTCGTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCATGGCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGAGAGAAAACCAACTGCCCAACCGACTGGATGCTATTCAAACGAACACAAGGCAATTGGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTRAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACATAGCAGTGAACCATATGGTGCAAATCAATAATCTTGTTGTAGCTTTTGAAATCCCAAATTTTCCAGATGCGGGGCTGAAATTAATCCATCAAAATGGGTTCCAACAGGCATCTCTCTGGCTTGGCGCCAAAAGAAAGGCATCATGTCCACGTGCTGGAATATGTGCTCCAATCGACACATTCGAATGGACTGATGGACAAACAACGGGAACCGATGGGTTCAATTGGTTTTCTCATCCAGGTGACGTTCAACCGGATGGCAAGTGGAGAAATGATTGGGGGTGAGTTGGAATCACATGACCAGCAGTAGTGCCGTATTGTAGATCTCTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>294 252 249 199 6</canonical_bands>
                <polymorphic_bands>546 249 199 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGTGTTAGGGTAAGAGAGACT</pcr_primer_p1>
		<pcr_primer_p2>TGTACCATAAGATTATTCCAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACA</canonical_amplicon>
		<polymorphic_amplicon>GGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTRAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23844</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>643012</contig_pos>
        <strand>-</strand>
        <context>ATTRAACCAT[A/G/C/T]RCCAGTCRGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G/C/T</alleles>
        <left_flank>AGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCAT</left_flank>
        <right_flank>CCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGGATTTTTAGAGTTCTGAATTTCAAAAATCAACAACAATTCTTTTGAAGTTTTGCAATAAAAAACCCTCGTTTTCGAAATTTTATGATCGAAAAAATATTGTTCGAGGGAACAAGGAGCTGTCCAATGAAAGTATAAAAAGTCATCGATTCGTAACTTTTTCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTTCGTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCATGGCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGAGAGAAAACCAACTGCCCAACCGACTGGATGCTATTCAAACGAACACAAGGCAATTGGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACATAGCAGTGAACCATATGGTGCAAATCAATAATCTTGTTGTAGCTTTTGAAATCCCAAATTTTCCAGATGCGGGGCTGAAATTAATCCATCAAAATGGGTTCCAACAGGCATCTCTCTGGCTTGGCGCCAAAAGAAAGGCATCATGTCCACGTGCTGGAATATGTGCTCCAATCGACACATTCGAATGGACTGATGGACAAACAACGGGAACCGATGGGTTCAATTGGTTTTCTCATCCAGGTGACGTTCAACCGGATGGCAAGTGGAGAAATGATTGGGGGTGAGTTGGAATCACATGACCAGCAGTAGTGCCGTATTGTAGATCTCTAACACCCCA</canonical>
            <polymorphic>TTTTGGATTTTTAGAGTTCTGAATTTCAAAAATCAACAACAATTCTTTTGAAGTTTTGCAATAAAAAACCCTCGTTTTCGAAATTTTATGATCGAAAAAATATTGTTCGAGGGAACAAGGAGCTGTCCAATGAAAGTATAAAAAGTCATCGATTCGTAACTTTTTCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTTCGTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCATGGCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGAGAGAAAACCAACTGCCCAACCGACTGGATGCTATTCAAACGAACACAAGGCAATTGGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATRCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACATAGCAGTGAACCATATGGTGCAAATCAATAATCTTGTTGTAGCTTTTGAAATCCCAAATTTTCCAGATGCGGGGCTGAAATTAATCCATCAAAATGGGTTCCAACAGGCATCTCTCTGGCTTGGCGCCAAAAGAAAGGCATCATGTCCACGTGCTGGAATATGTGCTCCAATCGACACATTCGAATGGACTGATGGACAAACAACGGGAACCGATGGGTTCAATTGGTTTTCTCATCCAGGTGACGTTCAACCGGATGGCAAGTGGAGAAATGATTGGGGGTGAGTTGGAATCACATGACCAGCAGTAGTGCCGTATTGTAGATCTCTAACACCCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGTGTTAGGGTAAGAGAGACT</pcr_primer_p1>
		<pcr_primer_p2>TGTACCATAAGATTATTCCAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACA</canonical_amplicon>
		<polymorphic_amplicon>GGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATRCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23845</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>643013</contig_pos>
        <strand>-</strand>
        <context>TTRAACCATR[A/G/C/T]CCAGTCRGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G/C/T</alleles>
        <left_flank>GAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATC</left_flank>
        <right_flank>CCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGC</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGATTTTTAGAGTTCTGAATTTCAAAAATCAACAACAATTCTTTTGAAGTTTTGCAATAAAAAACCCTCGTTTTCGAAATTTTATGATCGAAAAAATATTGTTCGAGGGAACAAGGAGCTGTCCAATGAAAGTATAAAAAGTCATCGATTCGTAACTTTTTCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTTCGTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCATGGCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGAGAGAAAACCAACTGCCCAACCGACTGGATGCTATTCAAACGAACACAAGGCAATTGGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACATAGCAGTGAACCATATGGTGCAAATCAATAATCTTGTTGTAGCTTTTGAAATCCCAAATTTTCCAGATGCGGGGCTGAAATTAATCCATCAAAATGGGTTCCAACAGGCATCTCTCTGGCTTGGCGCCAAAAGAAAGGCATCATGTCCACGTGCTGGAATATGTGCTCCAATCGACACATTCGAATGGACTGATGGACAAACAACGGGAACCGATGGGTTCAATTGGTTTTCTCATCCAGGTGACGTTCAACCGGATGGCAAGTGGAGAAATGATTGGGGGTGAGTTGGAATCACATGACCAGCAGTAGTGCCGTATTGTAGATCTCTAACACCCCAT</canonical>
            <polymorphic>TTTGGATTTTTAGAGTTCTGAATTTCAAAAATCAACAACAATTCTTTTGAAGTTTTGCAATAAAAAACCCTCGTTTTCGAAATTTTATGATCGAAAAAATATTGTTCGAGGGAACAAGGAGCTGTCCAATGAAAGTATAAAAAGTCATCGATTCGTAACTTTTTCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTTCGTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCATGGCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGAGAGAAAACCAACTGCCCAACCGACTGGATGCTATTCAAACGAACACAAGGCAATTGGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCRCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACATAGCAGTGAACCATATGGTGCAAATCAATAATCTTGTTGTAGCTTTTGAAATCCCAAATTTTCCAGATGCGGGGCTGAAATTAATCCATCAAAATGGGTTCCAACAGGCATCTCTCTGGCTTGGCGCCAAAAGAAAGGCATCATGTCCACGTGCTGGAATATGTGCTCCAATCGACACATTCGAATGGACTGATGGACAAACAACGGGAACCGATGGGTTCAATTGGTTTTCTCATCCAGGTGACGTTCAACCGGATGGCAAGTGGAGAAATGATTGGGGGTGAGTTGGAATCACATGACCAGCAGTAGTGCCGTATTGTAGATCTCTAACACCCCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGTGTTAGGGTAAGAGAGACT</pcr_primer_p1>
		<pcr_primer_p2>TGTACCATAAGATTATTCCAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACA</canonical_amplicon>
		<polymorphic_amplicon>GGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCRCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23846</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>643020</contig_pos>
        <strand>-</strand>
        <context>ATRRCCAGTC[A/G/T/C]GAGYCSCAWT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G/T/C</alleles>
        <left_flank>AAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTC</left_flank>
        <right_flank>GAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTAGAGTTCTGAATTTCAAAAATCAACAACAATTCTTTTGAAGTTTTGCAATAAAAAACCCTCGTTTTCGAAATTTTATGATCGAAAAAATATTGTTCGAGGGAACAAGGAGCTGTCCAATGAAAGTATAAAAAGTCATCGATTCGTAACTTTTTCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTTCGTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCATGGCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGAGAGAAAACCAACTGCCCAACCGACTGGATGCTATTCAAACGAACACAAGGCAATTGGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACATAGCAGTGAACCATATGGTGCAAATCAATAATCTTGTTGTAGCTTTTGAAATCCCAAATTTTCCAGATGCGGGGCTGAAATTAATCCATCAAAATGGGTTCCAACAGGCATCTCTCTGGCTTGGCGCCAAAAGAAAGGCATCATGTCCACGTGCTGGAATATGTGCTCCAATCGACACATTCGAATGGACTGATGGACAAACAACGGGAACCGATGGGTTCAATTGGTTTTCTCATCCAGGTGACGTTCAACCGGATGGCAAGTGGAGAAATGATTGGGGGTGAGTTGGAATCACATGACCAGCAGTAGTGCCGTATTGTAGATCTCTAACACCCCATATAATTT</canonical>
            <polymorphic>TTTTAGAGTTCTGAATTTCAAAAATCAACAACAATTCTTTTGAAGTTTTGCAATAAAAAACCCTCGTTTTCGAAATTTTATGATCGAAAAAATATTGTTCGAGGGAACAAGGAGCTGTCCAATGAAAGTATAAAAAGTCATCGATTCGTAACTTTTTCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTTCGTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCATGGCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGAGAGAAAACCAACTGCCCAACCGACTGGATGCTATTCAAACGAACACAAGGCAATTGGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCRGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACATAGCAGTGAACCATATGGTGCAAATCAATAATCTTGTTGTAGCTTTTGAAATCCCAAATTTTCCAGATGCGGGGCTGAAATTAATCCATCAAAATGGGTTCCAACAGGCATCTCTCTGGCTTGGCGCCAAAAGAAAGGCATCATGTCCACGTGCTGGAATATGTGCTCCAATCGACACATTCGAATGGACTGATGGACAAACAACGGGAACCGATGGGTTCAATTGGTTTTCTCATCCAGGTGACGTTCAACCGGATGGCAAGTGGAGAAATGATTGGGGGTGAGTTGGAATCACATGACCAGCAGTAGTGCCGTATTGTAGATCTCTAACACCCCATATAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGTGTTAGGGTAAGAGAGACT</pcr_primer_p1>
		<pcr_primer_p2>TGTACCATAAGATTATTCCAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACA</canonical_amplicon>
		<polymorphic_amplicon>GGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCRGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23847</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>643024</contig_pos>
        <strand>-</strand>
        <context>CCAGTCRGAG[C/T]CSCAWTGTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAG</left_flank>
        <right_flank>CCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGTTCTGAATTTCAAAAATCAACAACAATTCTTTTGAAGTTTTGCAATAAAAAACCCTCGTTTTCGAAATTTTATGATCGAAAAAATATTGTTCGAGGGAACAAGGAGCTGTCCAATGAAAGTATAAAAAGTCATCGATTCGTAACTTTTTCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTTCGTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCATGGCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGAGAGAAAACCAACTGCCCAACCGACTGGATGCTATTCAAACGAACACAAGGCAATTGGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACATAGCAGTGAACCATATGGTGCAAATCAATAATCTTGTTGTAGCTTTTGAAATCCCAAATTTTCCAGATGCGGGGCTGAAATTAATCCATCAAAATGGGTTCCAACAGGCATCTCTCTGGCTTGGCGCCAAAAGAAAGGCATCATGTCCACGTGCTGGAATATGTGCTCCAATCGACACATTCGAATGGACTGATGGACAAACAACGGGAACCGATGGGTTCAATTGGTTTTCTCATCCAGGTGACGTTCAACCGGATGGCAAGTGGAGAAATGATTGGGGGTGAGTTGGAATCACATGACCAGCAGTAGTGCCGTATTGTAGATCTCTAACACCCCATATAATTTGCAG</canonical>
            <polymorphic>AGAGTTCTGAATTTCAAAAATCAACAACAATTCTTTTGAAGTTTTGCAATAAAAAACCCTCGTTTTCGAAATTTTATGATCGAAAAAATATTGTTCGAGGGAACAAGGAGCTGTCCAATGAAAGTATAAAAAGTCATCGATTCGTAACTTTTTCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTTCGTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCATGGCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGAGAGAAAACCAACTGCCCAACCGACTGGATGCTATTCAAACGAACACAAGGCAATTGGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGYCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACATAGCAGTGAACCATATGGTGCAAATCAATAATCTTGTTGTAGCTTTTGAAATCCCAAATTTTCCAGATGCGGGGCTGAAATTAATCCATCAAAATGGGTTCCAACAGGCATCTCTCTGGCTTGGCGCCAAAAGAAAGGCATCATGTCCACGTGCTGGAATATGTGCTCCAATCGACACATTCGAATGGACTGATGGACAAACAACGGGAACCGATGGGTTCAATTGGTTTTCTCATCCAGGTGACGTTCAACCGGATGGCAAGTGGAGAAATGATTGGGGGTGAGTTGGAATCACATGACCAGCAGTAGTGCCGTATTGTAGATCTCTAACACCCCATATAATTTGCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>501 262 237</canonical_bands>
                <polymorphic_bands>738 262</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>496 224 196 84</canonical_bands>
                <polymorphic_bands>720 196 84</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 222 205 54 7 6 6</canonical_bands>
                <polymorphic_bands>705 222 54 7 6 6</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>230 205 112 110 70 67 56 54 45 32 7 6 6</canonical_bands>
                <polymorphic_bands>261 230 112 110 70 67 54 45 32 7 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGTGTTAGGGTAAGAGAGACT</pcr_primer_p1>
		<pcr_primer_p2>TGTACCATAAGATTATTCCAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACA</canonical_amplicon>
		<polymorphic_amplicon>GGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGYCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23848</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>643026</contig_pos>
        <strand>-</strand>
        <context>AGTCRGAGYC[C/G]CAWTGTGTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGC</left_flank>
        <right_flank>CAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTCTGAATTTCAAAAATCAACAACAATTCTTTTGAAGTTTTGCAATAAAAAACCCTCGTTTTCGAAATTTTATGATCGAAAAAATATTGTTCGAGGGAACAAGGAGCTGTCCAATGAAAGTATAAAAAGTCATCGATTCGTAACTTTTTCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTTCGTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCATGGCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGAGAGAAAACCAACTGCCCAACCGACTGGATGCTATTCAAACGAACACAAGGCAATTGGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACATAGCAGTGAACCATATGGTGCAAATCAATAATCTTGTTGTAGCTTTTGAAATCCCAAATTTTCCAGATGCGGGGCTGAAATTAATCCATCAAAATGGGTTCCAACAGGCATCTCTCTGGCTTGGCGCCAAAAGAAAGGCATCATGTCCACGTGCTGGAATATGTGCTCCAATCGACACATTCGAATGGACTGATGGACAAACAACGGGAACCGATGGGTTCAATTGGTTTTCTCATCCAGGTGACGTTCAACCGGATGGCAAGTGGAGAAATGATTGGGGGTGAGTTGGAATCACATGACCAGCAGTAGTGCCGTATTGTAGATCTCTAACACCCCATATAATTTGCAGAC</canonical>
            <polymorphic>AGTTCTGAATTTCAAAAATCAACAACAATTCTTTTGAAGTTTTGCAATAAAAAACCCTCGTTTTCGAAATTTTATGATCGAAAAAATATTGTTCGAGGGAACAAGGAGCTGTCCAATGAAAGTATAAAAAGTCATCGATTCGTAACTTTTTCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTTCGTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCATGGCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGAGAGAAAACCAACTGCCCAACCGACTGGATGCTATTCAAACGAACACAAGGCAATTGGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCSCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACATAGCAGTGAACCATATGGTGCAAATCAATAATCTTGTTGTAGCTTTTGAAATCCCAAATTTTCCAGATGCGGGGCTGAAATTAATCCATCAAAATGGGTTCCAACAGGCATCTCTCTGGCTTGGCGCCAAAAGAAAGGCATCATGTCCACGTGCTGGAATATGTGCTCCAATCGACACATTCGAATGGACTGATGGACAAACAACGGGAACCGATGGGTTCAATTGGTTTTCTCATCCAGGTGACGTTCAACCGGATGGCAAGTGGAGAAATGATTGGGGGTGAGTTGGAATCACATGACCAGCAGTAGTGCCGTATTGTAGATCTCTAACACCCCATATAATTTGCAGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>503 260 237</canonical_bands>
                <polymorphic_bands>740 260</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>502 220 205 54 7 6 6</canonical_bands>
                <polymorphic_bands>707 220 54 7 6 6</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>232 205 112 108 70 67 56 54 45 32 7 6 6</canonical_bands>
                <polymorphic_bands>261 232 112 108 70 67 54 45 32 7 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGTGTTAGGGTAAGAGAGACT</pcr_primer_p1>
		<pcr_primer_p2>TGTACCATAAGATTATTCCAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACA</canonical_amplicon>
		<polymorphic_amplicon>GGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCSCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23849</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>643029</contig_pos>
        <strand>-</strand>
        <context>CRGAGYCSCA[A/T]TGTGTTGCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCA</left_flank>
        <right_flank>TGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGAATTTCAAAAATCAACAACAATTCTTTTGAAGTTTTGCAATAAAAAACCCTCGTTTTCGAAATTTTATGATCGAAAAAATATTGTTCGAGGGAACAAGGAGCTGTCCAATGAAAGTATAAAAAGTCATCGATTCGTAACTTTTTCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTTCGTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCATGGCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGAGAGAAAACCAACTGCCCAACCGACTGGATGCTATTCAAACGAACACAAGGCAATTGGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACATAGCAGTGAACCATATGGTGCAAATCAATAATCTTGTTGTAGCTTTTGAAATCCCAAATTTTCCAGATGCGGGGCTGAAATTAATCCATCAAAATGGGTTCCAACAGGCATCTCTCTGGCTTGGCGCCAAAAGAAAGGCATCATGTCCACGTGCTGGAATATGTGCTCCAATCGACACATTCGAATGGACTGATGGACAAACAACGGGAACCGATGGGTTCAATTGGTTTTCTCATCCAGGTGACGTTCAACCGGATGGCAAGTGGAGAAATGATTGGGGGTGAGTTGGAATCACATGACCAGCAGTAGTGCCGTATTGTAGATCTCTAACACCCCATATAATTTGCAGACATC</canonical>
            <polymorphic>TCTGAATTTCAAAAATCAACAACAATTCTTTTGAAGTTTTGCAATAAAAAACCCTCGTTTTCGAAATTTTATGATCGAAAAAATATTGTTCGAGGGAACAAGGAGCTGTCCAATGAAAGTATAAAAAGTCATCGATTCGTAACTTTTTCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTTCGTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCATGGCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGAGAGAAAACCAACTGCCCAACCGACTGGATGCTATTCAAACGAACACAAGGCAATTGGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCAWTGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACATAGCAGTGAACCATATGGTGCAAATCAATAATCTTGTTGTAGCTTTTGAAATCCCAAATTTTCCAGATGCGGGGCTGAAATTAATCCATCAAAATGGGTTCCAACAGGCATCTCTCTGGCTTGGCGCCAAAAGAAAGGCATCATGTCCACGTGCTGGAATATGTGCTCCAATCGACACATTCGAATGGACTGATGGACAAACAACGGGAACCGATGGGTTCAATTGGTTTTCTCATCCAGGTGACGTTCAACCGGATGGCAAGTGGAGAAATGATTGGGGGTGAGTTGGAATCACATGACCAGCAGTAGTGCCGTATTGTAGATCTCTAACACCCCATATAATTTGCAGACATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGTGTTAGGGTAAGAGAGACT</pcr_primer_p1>
		<pcr_primer_p2>TGTACCATAAGATTATTCCAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACA</canonical_amplicon>
		<polymorphic_amplicon>GGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCAWTGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23850</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>643151</contig_pos>
        <strand>-</strand>
        <context>TAATAACCAG[A/G/C/T]TTTCTGGAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G/C/T</alleles>
        <left_flank>ATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAG</left_flank>
        <right_flank>TTTCTGGAATAATCTTATGGTACATAGCAGTGAACCATATGGTGCAAATC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAGTCATCGATTCGTAACTTTTTCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTTCGTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCATGGCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGAGAGAAAACCAACTGCCCAACCGACTGGATGCTATTCAAACGAACACAAGGCAATTGGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACATAGCAGTGAACCATATGGTGCAAATCAATAATCTTGTTGTAGCTTTTGAAATCCCAAATTTTCCAGATGCGGGGCTGAAATTAATCCATCAAAATGGGTTCCAACAGGCATCTCTCTGGCTTGGCGCCAAAAGAAAGGCATCATGTCCACGTGCTGGAATATGTGCTCCAATCGACACATTCGAATGGACTGATGGACAAACAACGGGAACCGATGGGTTCAATTGGTTTTCTCATCCAGGTGACGTTCAACCGGATGGCAAGTGGAGAAATGATTGGGGGTGAGTTGGAATCACATGACCAGCAGTAGTGCCGTATTGTAGATCTCTAACACCCCATATAATTTGCAGACATCAAAGCTGCGCTCTGCAATTTTTATTCGCCAGTGGAACGACTAGTAATGCATGGAGAGGATTTGTTCATGGGCAGATGGATGATCAATGGTGTCAATACTTGGATAATAACAGTAGACTGTAT</canonical>
            <polymorphic>AAAAAGTCATCGATTCGTAACTTTTTCTTCATTTCTTCAGAAAATGAAATTCTTAATTTTAATCATTTTCTGTTTCGTCTGCCCAATTTTAGCGGCCATTGGCCGCTATGATGGCGGTCGGGACAGCAGTTCCTGGTCCTCGGAATCTTCTGAAGGCCATGGCCACGGCCATGGCGGTCGACCACGTCCACCACGACCACCAGTACGCCCACGCCCGCCAAGAGAGAAAACCAACTGCCCAACCGACTGGATGCTATTCAAACGAACACAAGGCAATTGGTGTGTTAGGGTAAGAGAGACTACAAACTACAGAAACTAAAAACTATAAATTTTCAGGTTTTTGTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGRTTTCTGGAATAATCTTATGGTACATAGCAGTGAACCATATGGTGCAAATCAATAATCTTGTTGTAGCTTTTGAAATCCCAAATTTTCCAGATGCGGGGCTGAAATTAATCCATCAAAATGGGTTCCAACAGGCATCTCTCTGGCTTGGCGCCAAAAGAAAGGCATCATGTCCACGTGCTGGAATATGTGCTCCAATCGACACATTCGAATGGACTGATGGACAAACAACGGGAACCGATGGGTTCAATTGGTTTTCTCATCCAGGTGACGTTCAACCGGATGGCAAGTGGAGAAATGATTGGGGGTGAGTTGGAATCACATGACCAGCAGTAGTGCCGTATTGTAGATCTCTAACACCCCATATAATTTGCAGACATCAAAGCTGCGCTCTGCAATTTTTATTCGCCAGTGGAACGACTAGTAATGCATGGAGAGGATTTGTTCATGGGCAGATGGATGATCAATGGTGTCAATACTTGGATAATAACAGTAGACTGTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>499 316 118 67</canonical_bands>
                <polymorphic_bands>566 316 118</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>239 205 118 95 70 67 56 54 45 32 7 6 6</canonical_bands>
                <polymorphic_bands>239 205 137 118 95 56 54 45 32 7 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTTTTGTAGTTGGTAGTTTG</pcr_primer_p1>
		<pcr_primer_p2>GTCGATTGGAGCACATATTC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACATAGCAGTGAACCATATGGTGCAAATCAATAATCTTGTTGTAGCTTTTGAAATCCCAAATTTTCCAGATGCGGGGCTGAAATTAATCCATCAAAATGGGTTCCAACAGGCATCTCTCTGGCTTGGCGCCAAAAGAAAGGCATCATGTCCACGTGCTGGAATATGTGCTCCAATCGAC</canonical_amplicon>
		<polymorphic_amplicon>GGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGRTTTCTGGAATAATCTTATGGTACATAGCAGTGAACCATATGGTGCAAATCAATAATCTTGTTGTAGCTTTTGAAATCCCAAATTTTCCAGATGCGGGGCTGAAATTAATCCATCAAAATGGGTTCCAACAGGCATCTCTCTGGCTTGGCGCCAAAAGAAAGGCATCATGTCCACGTGCTGGAATATGTGCTCCAATCGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23851</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>643493</contig_pos>
        <strand>-</strand>
        <context>AGTGCCGTAT[A/C/T/G]GTAGATCTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C/T/G</alleles>
        <left_flank>GAAATGATTGGGGGTGAGTTGGAATCACATGACCAGCAGTAGTGCCGTAT</left_flank>
        <right_flank>GTAGATCTCTAACACCCCATATAATTTGCAGACATCAAAGCTGCGCTCTG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACATAGCAGTGAACCATATGGTGCAAATCAATAATCTTGTTGTAGCTTTTGAAATCCCAAATTTTCCAGATGCGGGGCTGAAATTAATCCATCAAAATGGGTTCCAACAGGCATCTCTCTGGCTTGGCGCCAAAAGAAAGGCATCATGTCCACGTGCTGGAATATGTGCTCCAATCGACACATTCGAATGGACTGATGGACAAACAACGGGAACCGATGGGTTCAATTGGTTTTCTCATCCAGGTGACGTTCAACCGGATGGCAAGTGGAGAAATGATTGGGGGTGAGTTGGAATCACATGACCAGCAGTAGTGCCGTATTGTAGATCTCTAACACCCCATATAATTTGCAGACATCAAAGCTGCGCTCTGCAATTTTTATTCGCCAGTGGAACGACTAGTAATGCATGGAGAGGATTTGTTCATGGGCAGATGGATGATCAATGGTGTCAATACTTGGATAATAACAGTAGACTGTATGCTTGTGGAAAATTGGCAACTTAATTACCCTATAATTAGTTGGATAATTAATAAAATGATTGATTGTCGGAATATAAATTTTAATAAACACTTTGAAAATATCTGTCAACTTTGAGCTCAATTATCTTGACTCCTGTACAAGATATTAAAATGTTGTCAACTGAAAAAATATTTGTGATAATATGATAAGAAATTTATCAGTTGACAAATTTTTGACATCTCTTACAGGAACGAAGATAACTGAGCTCAAAGTTTAACAATACTGAGGGGCTCATAGTTACCCGGACTCAAGTTTTCATAGCATAAAATTTGAGTATGGCATTGTACTGGGCTCAAATTTAG</canonical>
            <polymorphic>GTTGGCAGATTTAACCATCCCCAGTCTGAGGCCCAATGTGTTGCTCAAGGAGCAAAGTTGACTGGATTGCAGACAAATGAGGAGAGGCTGAAAGTGGCAGGTTAGGGATTTTTGTAGTTGGTAGTTTGTAGTGACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACATAGCAGTGAACCATATGGTGCAAATCAATAATCTTGTTGTAGCTTTTGAAATCCCAAATTTTCCAGATGCGGGGCTGAAATTAATCCATCAAAATGGGTTCCAACAGGCATCTCTCTGGCTTGGCGCCAAAAGAAAGGCATCATGTCCACGTGCTGGAATATGTGCTCCAATCGACACATTCGAATGGACTGATGGACAAACAACGGGAACCGATGGGTTCAATTGGTTTTCTCATCCAGGTGACGTTCAACCGGATGGCAAGTGGAGAAATGATTGGGGGTGAGTTGGAATCACATGACCAGCAGTAGTGCCGTATMGTAGATCTCTAACACCCCATATAATTTGCAGACATCAAAGCTGCGCTCTGCAATTTTTATTCGCCAGTGGAACGACTAGTAATGCATGGAGAGGATTTGTTCATGGGCAGATGGATGATCAATGGTGTCAATACTTGGATAATAACAGTAGACTGTATGCTTGTGGAAAATTGGCAACTTAATTACCCTATAATTAGTTGGATAATTAATAAAATGATTGATTGTCGGAATATAAATTTTAATAAACACTTTGAAAATATCTGTCAACTTTGAGCTCAATTATCTTGACTCCTGTACAAGATATTAAAATGTTGTCAACTGAAAAAATATTTGTGATAATATGATAAGAAATTTATCAGTTGACAAATTTTTGACATCTCTTACAGGAACGAAGATAACTGAGCTCAAAGTTTAACAATACTGAGGGGCTCATAGTTACCCGGACTCAAGTTTTCATAGCATAAAATTTGAGTATGGCATTGTACTGGGCTCAAATTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGGAATATGTGCTCCAATC</pcr_primer_p1>
		<pcr_primer_p2>GCATTACTAGTCGTTCCACTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGGAATATGTGCTCCAATCGACACATTCGAATGGACTGATGGACAAACAACGGGAACCGATGGGTTCAATTGGTTTTCTCATCCAGGTGACGTTCAACCGGATGGCAAGTGGAGAAATGATTGGGGGTGAGTTGGAATCACATGACCAGCAGTAGTGCCGTATTGTAGATCTCTAACACCCCATATAATTTGCAGACATCAAAGCTGCGCTCTGCAATTTTTATTCGCCAGTGGAACGACTAGTAATGC</canonical_amplicon>
		<polymorphic_amplicon>CTGGAATATGTGCTCCAATCGACACATTCGAATGGACTGATGGACAAACAACGGGAACCGATGGGTTCAATTGGTTTTCTCATCCAGGTGACGTTCAACCGGATGGCAAGTGGAGAAATGATTGGGGGTGAGTTGGAATCACATGACCAGCAGTAGTGCCGTATMGTAGATCTCTAACACCCCATATAATTTGCAGACATCAAAGCTGCGCTCTGCAATTTTTATTCGCCAGTGGAACGACTAGTAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23852</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>643625</contig_pos>
        <strand>-</strand>
        <context>ATGGTGTCAA[A/T]ACTTGGATAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGCATGGAGAGGATTTGTTCATGGGCAGATGGATGATCAATGGTGTCAA</left_flank>
        <right_flank>ACTTGGATAATAACAGTAGACTGTATGCTTGTGGAAAATTGGCAACTTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACATAGCAGTGAACCATATGGTGCAAATCAATAATCTTGTTGTAGCTTTTGAAATCCCAAATTTTCCAGATGCGGGGCTGAAATTAATCCATCAAAATGGGTTCCAACAGGCATCTCTCTGGCTTGGCGCCAAAAGAAAGGCATCATGTCCACGTGCTGGAATATGTGCTCCAATCGACACATTCGAATGGACTGATGGACAAACAACGGGAACCGATGGGTTCAATTGGTTTTCTCATCCAGGTGACGTTCAACCGGATGGCAAGTGGAGAAATGATTGGGGGTGAGTTGGAATCACATGACCAGCAGTAGTGCCGTATTGTAGATCTCTAACACCCCATATAATTTGCAGACATCAAAGCTGCGCTCTGCAATTTTTATTCGCCAGTGGAACGACTAGTAATGCATGGAGAGGATTTGTTCATGGGCAGATGGATGATCAATGGTGTCAATACTTGGATAATAACAGTAGACTGTATGCTTGTGGAAAATTGGCAACTTAATTACCCTATAATTAGTTGGATAATTAATAAAATGATTGATTGTCGGAATATAAATTTTAATAAACACTTTGAAAATATCTGTCAACTTTGAGCTCAATTATCTTGACTCCTGTACAAGATATTAAAATGTTGTCAACTGAAAAAATATTTGTGATAATATGATAAGAAATTTATCAGTTGACAAATTTTTGACATCTCTTACAGGAACGAAGATAACTGAGCTCAAAGTTTAACAATACTGAGGGGCTCATAGTTACCCGGACTCAAGTTTTCATAGCATAAAATTTGAGTATGGCATTGTACTGGGCTCAAATTTAGAGAGCAACAATTAGCATACTTCATCAATAATCTAACAGAGTTTCATATCATTTTATCAACTTTGAGCTGAGTTGCAGCTTGTCAAAGTTGTTTCATCTCATAAATGTTGTAGCTCAACTTTGCCTAACCATA</canonical>
            <polymorphic>GACTTTGACAATGGGTAATAACCAGCTTTCTGGAATAATCTTATGGTACATAGCAGTGAACCATATGGTGCAAATCAATAATCTTGTTGTAGCTTTTGAAATCCCAAATTTTCCAGATGCGGGGCTGAAATTAATCCATCAAAATGGGTTCCAACAGGCATCTCTCTGGCTTGGCGCCAAAAGAAAGGCATCATGTCCACGTGCTGGAATATGTGCTCCAATCGACACATTCGAATGGACTGATGGACAAACAACGGGAACCGATGGGTTCAATTGGTTTTCTCATCCAGGTGACGTTCAACCGGATGGCAAGTGGAGAAATGATTGGGGGTGAGTTGGAATCACATGACCAGCAGTAGTGCCGTATTGTAGATCTCTAACACCCCATATAATTTGCAGACATCAAAGCTGCGCTCTGCAATTTTTATTCGCCAGTGGAACGACTAGTAATGCATGGAGAGGATTTGTTCATGGGCAGATGGATGATCAATGGTGTCAAWACTTGGATAATAACAGTAGACTGTATGCTTGTGGAAAATTGGCAACTTAATTACCCTATAATTAGTTGGATAATTAATAAAATGATTGATTGTCGGAATATAAATTTTAATAAACACTTTGAAAATATCTGTCAACTTTGAGCTCAATTATCTTGACTCCTGTACAAGATATTAAAATGTTGTCAACTGAAAAAATATTTGTGATAATATGATAAGAAATTTATCAGTTGACAAATTTTTGACATCTCTTACAGGAACGAAGATAACTGAGCTCAAAGTTTAACAATACTGAGGGGCTCATAGTTACCCGGACTCAAGTTTTCATAGCATAAAATTTGAGTATGGCATTGTACTGGGCTCAAATTTAGAGAGCAACAATTAGCATACTTCATCAATAATCTAACAGAGTTTCATATCATTTTATCAACTTTGAGCTGAGTTGCAGCTTGTCAAAGTTGTTTCATCTCATAAATGTTGTAGCTCAACTTTGCCTAACCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATCACATGACCAGCAGTAG</pcr_primer_p1>
		<pcr_primer_p2>GGTAATTAAGTTGCCAATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>217</pcr_amplicon_size>
		<canonical_amplicon>GAATCACATGACCAGCAGTAGTGCCGTATTGTAGATCTCTAACACCCCATATAATTTGCAGACATCAAAGCTGCGCTCTGCAATTTTTATTCGCCAGTGGAACGACTAGTAATGCATGGAGAGGATTTGTTCATGGGCAGATGGATGATCAATGGTGTCAATACTTGGATAATAACAGTAGACTGTATGCTTGTGGAAAATTGGCAACTTAATTACC</canonical_amplicon>
		<polymorphic_amplicon>GAATCACATGACCAGCAGTAGTGCCGTATTGTAGATCTCTAACACCCCATATAATTTGCAGACATCAAAGCTGCGCTCTGCAATTTTTATTCGCCAGTGGAACGACTAGTAATGCATGGAGAGGATTTGTTCATGGGCAGATGGATGATCAATGGTGTCAAWACTTGGATAATAACAGTAGACTGTATGCTTGTGGAAAATTGGCAACTTAATTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23853</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>643714</contig_pos>
        <strand>-</strand>
        <context>AAAATGATTG[C/T/A/G]TTGTCGGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T/A/G</alleles>
        <left_flank>TTGGCAACTTAATTACCCTATAATTAGTTGGATAATTAATAAAATGATTG</left_flank>
        <right_flank>TTGTCGGAATATAAATTTTAATAAACACTTTGAAAATATCTGTCAACTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGCTTTTGAAATCCCAAATTTTCCAGATGCGGGGCTGAAATTAATCCATCAAAATGGGTTCCAACAGGCATCTCTCTGGCTTGGCGCCAAAAGAAAGGCATCATGTCCACGTGCTGGAATATGTGCTCCAATCGACACATTCGAATGGACTGATGGACAAACAACGGGAACCGATGGGTTCAATTGGTTTTCTCATCCAGGTGACGTTCAACCGGATGGCAAGTGGAGAAATGATTGGGGGTGAGTTGGAATCACATGACCAGCAGTAGTGCCGTATTGTAGATCTCTAACACCCCATATAATTTGCAGACATCAAAGCTGCGCTCTGCAATTTTTATTCGCCAGTGGAACGACTAGTAATGCATGGAGAGGATTTGTTCATGGGCAGATGGATGATCAATGGTGTCAATACTTGGATAATAACAGTAGACTGTATGCTTGTGGAAAATTGGCAACTTAATTACCCTATAATTAGTTGGATAATTAATAAAATGATTGATTGTCGGAATATAAATTTTAATAAACACTTTGAAAATATCTGTCAACTTTGAGCTCAATTATCTTGACTCCTGTACAAGATATTAAAATGTTGTCAACTGAAAAAATATTTGTGATAATATGATAAGAAATTTATCAGTTGACAAATTTTTGACATCTCTTACAGGAACGAAGATAACTGAGCTCAAAGTTTAACAATACTGAGGGGCTCATAGTTACCCGGACTCAAGTTTTCATAGCATAAAATTTGAGTATGGCATTGTACTGGGCTCAAATTTAGAGAGCAACAATTAGCATACTTCATCAATAATCTAACAGAGTTTCATATCATTTTATCAACTTTGAGCTGAGTTGCAGCTTGTCAAAGTTGTTTCATCTCATAAATGTTGTAGCTCAACTTTGCCTAACCATAAAAACTGTAGGAATGATGGTGAGTGGCTGAAAATTTATGAGTGTTAAGATAAACTCTCCTAAAATCATTTATAAGCATTTTAGATTGCT</canonical>
            <polymorphic>TAGCTTTTGAAATCCCAAATTTTCCAGATGCGGGGCTGAAATTAATCCATCAAAATGGGTTCCAACAGGCATCTCTCTGGCTTGGCGCCAAAAGAAAGGCATCATGTCCACGTGCTGGAATATGTGCTCCAATCGACACATTCGAATGGACTGATGGACAAACAACGGGAACCGATGGGTTCAATTGGTTTTCTCATCCAGGTGACGTTCAACCGGATGGCAAGTGGAGAAATGATTGGGGGTGAGTTGGAATCACATGACCAGCAGTAGTGCCGTATTGTAGATCTCTAACACCCCATATAATTTGCAGACATCAAAGCTGCGCTCTGCAATTTTTATTCGCCAGTGGAACGACTAGTAATGCATGGAGAGGATTTGTTCATGGGCAGATGGATGATCAATGGTGTCAATACTTGGATAATAACAGTAGACTGTATGCTTGTGGAAAATTGGCAACTTAATTACCCTATAATTAGTTGGATAATTAATAAAATGATTGYTTGTCGGAATATAAATTTTAATAAACACTTTGAAAATATCTGTCAACTTTGAGCTCAATTATCTTGACTCCTGTACAAGATATTAAAATGTTGTCAACTGAAAAAATATTTGTGATAATATGATAAGAAATTTATCAGTTGACAAATTTTTGACATCTCTTACAGGAACGAAGATAACTGAGCTCAAAGTTTAACAATACTGAGGGGCTCATAGTTACCCGGACTCAAGTTTTCATAGCATAAAATTTGAGTATGGCATTGTACTGGGCTCAAATTTAGAGAGCAACAATTAGCATACTTCATCAATAATCTAACAGAGTTTCATATCATTTTATCAACTTTGAGCTGAGTTGCAGCTTGTCAAAGTTGTTTCATCTCATAAATGTTGTAGCTCAACTTTGCCTAACCATAAAAACTGTAGGAATGATGGTGAGTGGCTGAAAATTTATGAGTGTTAAGATAAACTCTCCTAAAATCATTTATAAGCATTTTAGATTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGAAAATTGGCAACTTAAT</pcr_primer_p1>
		<pcr_primer_p2>GGTAAACACATCACCTCTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>966</pcr_amplicon_size>
		<canonical_amplicon>GTGGAAAATTGGCAACTTAATTACCCTATAATTAGTTGGATAATTAATAAAATGATTGATTGTCGGAATATAAATTTTAA</canonical_amplicon>
		<polymorphic_amplicon>GTGGAAAATTGGCAACTTAATTACCCTATAATTAGTTGGATAATTAATAAAATGATTGYTTGTCGGAATATAAATTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23854</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>643850</contig_pos>
        <strand></strand>
        <context>agaaatttat[C/A]agttgacaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AAATGTTGTCAACTGAAAAAATATTTGTGATAATATGATAAGAAATTTAT</left_flank>
        <right_flank>AGTTGACAAATTTTTGACATCTCTTACAGGAACGAAGATAACTGAGCTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACATTCGAATGGACTGATGGACAAACAACGGGAACCGATGGGTTCAATTGGTTTTCTCATCCAGGTGACGTTCAACCGGATGGCAAGTGGAGAAATGATTGGGGGTGAGTTGGAATCACATGACCAGCAGTAGTGCCGTATTGTAGATCTCTAACACCCCATATAATTTGCAGACATCAAAGCTGCGCTCTGCAATTTTTATTCGCCAGTGGAACGACTAGTAATGCATGGAGAGGATTTGTTCATGGGCAGATGGATGATCAATGGTGTCAATACTTGGATAATAACAGTAGACTGTATGCTTGTGGAAAATTGGCAACTTAATTACCCTATAATTAGTTGGATAATTAATAAAATGATTGATTGTCGGAATATAAATTTTAATAAACACTTTGAAAATATCTGTCAACTTTGAGCTCAATTATCTTGACTCCTGTACAAGATATTAAAATGTTGTCAACTGAAAAAATATTTGTGATAATATGATAAGAAATTTATCAGTTGACAAATTTTTGACATCTCTTACAGGAACGAAGATAACTGAGCTCAAAGTTTAACAATACTGAGGGGCTCATAGTTACCCGGACTCAAGTTTTCATAGCATAAAATTTGAGTATGGCATTGTACTGGGCTCAAATTTAGAGAGCAACAATTAGCATACTTCATCAATAATCTAACAGAGTTTCATATCATTTTATCAACTTTGAGCTGAGTTGCAGCTTGTCAAAGTTGTTTCATCTCATAAATGTTGTAGCTCAACTTTGCCTAACCATAAAAACTGTAGGAATGATGGTGAGTGGCTGAAAATTTATGAGTGTTAAGATAAACTCTCCTAAAATCATTTATAAGCATTTTAGATTGCTACAAAACTGATCAAATTGGTAGTCACCAGTTTTCCGAAGAGGCTAAATTTAGAAAATGCTCGAATTTTTGAGATGAATTGATCTGACGGCTTGAAATTTATGATTTTGTGTGTGTGTGTGTGTGTGTGTGCGCGCG</canonical>
            <polymorphic>CACATTCGAATGGACTGATGGACAAACAACGGGAACCGATGGGTTCAATTGGTTTTCTCATCCAGGTGACGTTCAACCGGATGGCAAGTGGAGAAATGATTGGGGGTGAGTTGGAATCACATGACCAGCAGTAGTGCCGTATTGTAGATCTCTAACACCCCATATAATTTGCAGACATCAAAGCTGCGCTCTGCAATTTTTATTCGCCAGTGGAACGACTAGTAATGCATGGAGAGGATTTGTTCATGGGCAGATGGATGATCAATGGTGTCAATACTTGGATAATAACAGTAGACTGTATGCTTGTGGAAAATTGGCAACTTAATTACCCTATAATTAGTTGGATAATTAATAAAATGATTGATTGTCGGAATATAAATTTTAATAAACACTTTGAAAATATCTGTCAACTTTGAGCTCAATTATCTTGACTCCTGTACAAGATATTAAAATGTTGTCAACTGAAAAAATATTTGTGATAATATGATAAGAAATTTATMAGTTGACAAATTTTTGACATCTCTTACAGGAACGAAGATAACTGAGCTCAAAGTTTAACAATACTGAGGGGCTCATAGTTACCCGGACTCAAGTTTTCATAGCATAAAATTTGAGTATGGCATTGTACTGGGCTCAAATTTAGAGAGCAACAATTAGCATACTTCATCAATAATCTAACAGAGTTTCATATCATTTTATCAACTTTGAGCTGAGTTGCAGCTTGTCAAAGTTGTTTCATCTCATAAATGTTGTAGCTCAACTTTGCCTAACCATAAAAACTGTAGGAATGATGGTGAGTGGCTGAAAATTTATGAGTGTTAAGATAAACTCTCCTAAAATCATTTATAAGCATTTTAGATTGCTACAAAACTGATCAAATTGGTAGTCACCAGTTTTCCGAAGAGGCTAAATTTAGAAAATGCTCGAATTTTTGAGATGAATTGATCTGACGGCTTGAAATTTATGATTTTGTGTGTGTGTGTGTGTGTGTGTGCGCGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGCAACTTAATTACCCTATAA</pcr_primer_p1>
		<pcr_primer_p2>GGTAAACACATCACCTCTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>958</pcr_amplicon_size>
		<canonical_amplicon>TTGGCAACTTAATTACCCTATAATTAGTTGGATAATTAATAAAATGATTGATTGTCGGAATATAAATTTTAATAAACACTTTGAAAATATCTGTCAACTTTGAGCTCAATTATCTTGACTCCTGTACAAGATATTAAAATGTTGTCAACTGAAAAAATATTTGTGATAATATGATAAGAAATTTATCAGTTGACAAATTTTTGACATC</canonical_amplicon>
		<polymorphic_amplicon>TTGGCAACTTAATTACCCTATAATTAGTTGGATAATTAATAAAATGATTGATTGTCGGAATATAAATTTTAATAAACACTTTGAAAATATCTGTCAACTTTGAGCTCAATTATCTTGACTCCTGTACAAGATATTAAAATGTTGTCAACTGAAAAAATATTTGTGATAATATGATAAGAAATTTATMAGTTGACAAATTTTTGACATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23855</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>645050</contig_pos>
        <strand>+</strand>
        <context>CGACCACCAG[C/T]ACGYCCACGM</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCACGGCCACGGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAG</left_flank>
        <right_flank>ACGTCCACGACCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCACACTGAAAGTGGTGGAACTTCCCCCCTAGGAAGAGTTGCCGAGGGGAAGAGAGGTGATGTGTTTACCTCTATTGTCGAATGGAACAAAAACTGGGACCTGAGAATTTCAGTAAAATCTAGTGATTTTTGAAATCAAAAATCAACAAAAAATCGACTTGCAAGAAAAACCTTTTTTCGCAATTTTATAACCCCGAAAAAAAACTTTTCCGGAGAACAAGGAACTTTTTTTGTTTGATGAGGGTATAAAAAGCCAGCGGCTCTAAACTTTTTCTTCAGTTTTGAAAACAGAAAATATGAAGCTTTCAATTCTAATATTTTTCTCTTTTCTCTGCCCGATTCTAGCGGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCGGAATCCCATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAGCACGTCCACGACCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGCTATTCAAACGATCTCAAGGCAATTGGTGTGTTAAGGTGAAAGAGACTTCAAACTACAGAAACTAAAAACGACGAACCTTCAGGTTTTTGTTGGTCGATTGAACCAACCCCAAGCCGAAGCACAATGTGTTGTTCAAGGAGCAGTGTTATCTGGATTGCAGACGGATGAGGAGAGGGTGAAAGTGGCAGGTTAGGGATTTTATAATCTGTTTGTAGTCTTACCCATATGGTACATGACAATGAGCTATACAGCACTAAAAAGTAGCCATATGACGCCCATATAGTACATCTAGAACGTCGAATAGAGAGCTTTAGTGATCATATGGTACATAGCAACGAACCATATGGTGCAAATCAATTACCATTTTCTAGTCTTTGCAATTCCAATTTTTCCAGAAATGGCTACAAAATTGGTCCATCAAAATGGGTTCGATCAGGCATCTGTTTGGAT</canonical>
            <polymorphic>AGCACACTGAAAGTGGTGGAACTTCCCCCCTAGGAAGAGTTGCCGAGGGGAAGAGAGGTGATGTGTTTACCTCTATTGTCGAATGGAACAAAAACTGGGACCTGAGAATTTCAGTAAAATCTAGTGATTTTTGAAATCAAAAATCAACAAAAAATCGACTTGCAAGAAAAACCTTTTTTCGCAATTTTATAACCCCGAAAAAAAACTTTTCCGGAGAACAAGGAACTTTTTTTGTTTGATGAGGGTATAAAAAGCCAGCGGCTCTAAACTTTTTCTTCAGTTTTGAAAACAGAAAATATGAAGCTTTCAATTCTAATATTTTTCTCTTTTCTCTGCCCGATTCTAGCGGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCGGAATCCCATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAGYACGTCCACGACCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGCTATTCAAACGATCTCAAGGCAATTGGTGTGTTAAGGTGAAAGAGACTTCAAACTACAGAAACTAAAAACGACGAACCTTCAGGTTTTTGTTGGTCGATTGAACCAACCCCAAGCCGAAGCACAATGTGTTGTTCAAGGAGCAGTGTTATCTGGATTGCAGACGGATGAGGAGAGGGTGAAAGTGGCAGGTTAGGGATTTTATAATCTGTTTGTAGTCTTACCCATATGGTACATGACAATGAGCTATACAGCACTAAAAAGTAGCCATATGACGCCCATATAGTACATCTAGAACGTCGAATAGAGAGCTTTAGTGATCATATGGTACATAGCAACGAACCATATGGTGCAAATCAATTACCATTTTCTAGTCTTTGCAATTCCAATTTTTCCAGAAATGGCTACAAAATTGGTCCATCAAAATGGGTTCGATCAGGCATCTGTTTGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>232 101 83 81 71 69 63 61 42 33 33 17 15 13 11 11 9 8 7 6 6 6 6 5 4 3 2 2</canonical_bands>
                <polymorphic_bands>232 101 83 81 71 69 63 61 42 33 33 17 15 13 12 11 11 9 8 7 6 6 5 4 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCCATTGGTGTCTATAATG</pcr_primer_p1>
		<pcr_primer_p2>TGAAGTCTCTTTCACCTTAACAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCGGAATCCCATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAGCACGTCCACGACCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGCTATTCAAACGATCTCAAGGCAATTGGTGTGTTAAGGTGAAAGAGACTTCA</canonical_amplicon>
		<polymorphic_amplicon>GGCCATTGGTGTCTATAATGGCGGCGAAGATAGCAGTAGTAGCTCTTCATGGTCTTCGGAATCCCATGAAGGTCGAGGGGGCGGACGAGGTGGTCGAGGCGGCCACGGCCACGGTAATGGTGGGGGTCGACCACGTCCCCAACGACCACCAGYACGTCCACGACCGCCAAGAGAGAAGACCAACTGCCCGGCAGACTGGATGCTATTCAAACGATCTCAAGGCAATTGGTGTGTTAAGGTGAAAGAGACTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23856</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>652091</contig_pos>
        <strand>+</strand>
        <context>TGAACATTCT[C/T]TAACAATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGAAAATTCAATTTGAAAACCTTAAAAAACTTAAAATCCTGAACATTCT</left_flank>
        <right_flank>TAACAATTTTAATTCCTAAAAATCTGCAAAAAAGGAAAAAAATTCCAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTCAAAAATTTCAGAATTTCAGAACTTCAGAGTATCAGAATTCCCAATTCTCAAAAATCTCCGAATTTTTGCTTCCTTGAATTCTTGACAGTTTCGGAGTCTCATAATTTCCAAACCGTCTATTTTGAGACTAGTTCCTTACACTGACCTTGTTAGGTCAGTGACCCCAAAAAATGACAAATTTCCAAGAAATGTTTTGAACAACATTCTAAAAAAAAGTCTAAAAAATACAAAACAAAAATATGCTTTTGTCTTTTTTTATTATTATTCATTCTTCTCGGGATTCTTTTTTGACATCCCGCTGAGNNNNNNNNNNTACAAAAGTTTGTAAGCCTCAGCAAAAACTTCAAATCGCTCTAACTTGGCTCATTTTCAACCGACTTTGATGGATTTTGGGTCAATTTTTTTGAAATTTTACTCTTTTTTCAATGGAAAATGTTTGAAATTCTGAAAATTCAATTTGAAAACCTTAAAAAACTTAAAATCCTGAACATTCTTTAACAATTTTAATTCCTAAAAATCTGCAAAAAAGGAAAAAAATTCCAATTTCTAAGAAATTTCAAAAATCGTGAAATCTCTCATTCTCGTATTTTCTTTCTTTTTTCACTATTTTCGCTCAATGAAGCGGAAAAATTCTTATTCTAGCAAGAAAAAAAATTTCAGCATTTTAAGCACAACACTTTTTTTGTGTGGGTGTATTACTCTTTTTTTTGTGTGTGTGTGTTTCTGGTTTCAATTACTACTTTTTTCAATTTTAATCACAAAATTCATCTTTTCTGTTTCTGCTTTTCTGATTTCCTGGTAACATTTTCTTCATTTTCTGAATTATTCTTCCCTGAAATTTTTTTAAAAAACAAAGTTTTCCTTTTCAGTTTCACATGAATTTTAAATTTCTTGAAAAATAATGTTCAAGTTTTCTCAGTTACCCCTTTTTTTCTGAAAAGGCTGAAAATTTTGGGATTTTTGGATTTTTTTTTTCAAATTTCATCCAAATTTCA</canonical>
            <polymorphic>AATTCAAAAATTTCAGAATTTCAGAACTTCAGAGTATCAGAATTCCCAATTCTCAAAAATCTCCGAATTTTTGCTTCCTTGAATTCTTGACAGTTTCGGAGTCTCATAATTTCCAAACCGTCTATTTTGAGACTAGTTCCTTACACTGACCTTGTTAGGTCAGTGACCCCAAAAAATGACAAATTTCCAAGAAATGTTTTGAACAACATTCTAAAAAAAAGTCTAAAAAATACAAAACAAAAATATGCTTTTGTCTTTTTTTATTATTATTCATTCTTCTCGGGATTCTTTTTTGACATCCCGCTGAGNNNNNNNNNNTACAAAAGTTTGTAAGCCTCAGCAAAAACTTCAAATCGCTCTAACTTGGCTCATTTTCAACCGACTTTGATGGATTTTGGGTCAATTTTTTTGAAATTTTACTCTTTTTTCAATGGAAAATGTTTGAAATTCTGAAAATTCAATTTGAAAACCTTAAAAAACTTAAAATCCTGAACATTCTYTAACAATTTTAATTCCTAAAAATCTGCAAAAAAGGAAAAAAATTCCAATTTCTAAGAAATTTCAAAAATCGTGAAATCTCTCATTCTCGTATTTTCTTTCTTTTTTCACTATTTTCGCTCAATGAAGCGGAAAAATTCTTATTCTAGCAAGAAAAAAAATTTCAGCATTTTAAGCACAACACTTTTTTTGTGTGGGTGTATTACTCTTTTTTTTGTGTGTGTGTGTTTCTGGTTTCAATTACTACTTTTTTCAATTTTAATCACAAAATTCATCTTTTCTGTTTCTGCTTTTCTGATTTCCTGGTAACATTTTCTTCATTTTCTGAATTATTCTTCCCTGAAATTTTTTTAAAAAACAAAGTTTTCCTTTTCAGTTTCACATGAATTTTAAATTTCTTGAAAAATAATGTTCAAGTTTTCTCAGTTACCCCTTTTTTTCTGAAAAGGCTGAAAATTTTGGGATTTTTGGATTTTTTTTTTCAAATTTCATCCAAATTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>472 161 112 92 87 39 19 9 9</canonical_bands>
                <polymorphic_bands>472 161 112 92 87 39 28 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGGAAAATGTTTGAAATTCTG</pcr_primer_p1>
		<pcr_primer_p2>GTTGTGCTTAAAATGCTGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGGAAAATGTTTGAAATTCTGAAAATTCAATTTGAAAACCTTAAAAAACTTAAAATCCTGAACATTCTTTAACAATTTTAATTCCTAAAAATCTGCAAAAAAGGAAAAAAATTCCAATTTCTAAGAAATTTCAAAAATCGTGAAATCTCTCATTCTCGTATTTTCTTTCTTTTTTCACTATTTTCGCTCAATGAAGCGGAAAAATTCTTATTCTAGCAAGAAAAAAAATTTCAGCATTTTAAGCACAAC</canonical_amplicon>
		<polymorphic_amplicon>ATGGAAAATGTTTGAAATTCTGAAAATTCAATTTGAAAACCTTAAAAAACTTAAAATCCTGAACATTCTYTAACAATTTTAATTCCTAAAAATCTGCAAAAAAGGAAAAAAATTCCAATTTCTAAGAAATTTCAAAAATCGTGAAATCTCTCATTCTCGTATTTTCTTTCTTTTTTCACTATTTTCGCTCAATGAAGCGGAAAAATTCTTATTCTAGCAAGAAAAAAAATTTCAGCATTTTAAGCACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23857</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>652197</contig_pos>
        <strand>+</strand>
        <context>CTTTCTTTTT[C/T]CACTATTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAATTTCAAAAATCGTGAAATCTCTCATTCTCGTATTTTCTTTCTTTTT</left_flank>
        <right_flank>CACTATTTTCGCTCAATGAAGCGGAAAAATTCTTATTCTAGCAAGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTTCCAAACCGTCTATTTTGAGACTAGTTCCTTACACTGACCTTGTTAGGTCAGTGACCCCAAAAAATGACAAATTTCCAAGAAATGTTTTGAACAACATTCTAAAAAAAAGTCTAAAAAATACAAAACAAAAATATGCTTTTGTCTTTTTTTATTATTATTCATTCTTCTCGGGATTCTTTTTTGACATCCCGCTGAGNNNNNNNNNNTACAAAAGTTTGTAAGCCTCAGCAAAAACTTCAAATCGCTCTAACTTGGCTCATTTTCAACCGACTTTGATGGATTTTGGGTCAATTTTTTTGAAATTTTACTCTTTTTTCAATGGAAAATGTTTGAAATTCTGAAAATTCAATTTGAAAACCTTAAAAAACTTAAAATCCTGAACATTCTTTAACAATTTTAATTCCTAAAAATCTGCAAAAAAGGAAAAAAATTCCAATTTCTAAGAAATTTCAAAAATCGTGAAATCTCTCATTCTCGTATTTTCTTTCTTTTTTCACTATTTTCGCTCAATGAAGCGGAAAAATTCTTATTCTAGCAAGAAAAAAAATTTCAGCATTTTAAGCACAACACTTTTTTTGTGTGGGTGTATTACTCTTTTTTTTGTGTGTGTGTGTTTCTGGTTTCAATTACTACTTTTTTCAATTTTAATCACAAAATTCATCTTTTCTGTTTCTGCTTTTCTGATTTCCTGGTAACATTTTCTTCATTTTCTGAATTATTCTTCCCTGAAATTTTTTTAAAAAACAAAGTTTTCCTTTTCAGTTTCACATGAATTTTAAATTTCTTGAAAAATAATGTTCAAGTTTTCTCAGTTACCCCTTTTTTTCTGAAAAGGCTGAAAATTTTGGGATTTTTGGATTTTTTTTTTCAAATTTCATCCAAATTTCAGAAATCCTCAGCTTTCCAGACTTTTTCCTTTAAAAAGTGGAAAAAAAAGAAAAAAATAATAATTAAATCCAAAAAAAAAGAAAAAGTGACAGAATTTTATTAGAAT</canonical>
            <polymorphic>TAATTTCCAAACCGTCTATTTTGAGACTAGTTCCTTACACTGACCTTGTTAGGTCAGTGACCCCAAAAAATGACAAATTTCCAAGAAATGTTTTGAACAACATTCTAAAAAAAAGTCTAAAAAATACAAAACAAAAATATGCTTTTGTCTTTTTTTATTATTATTCATTCTTCTCGGGATTCTTTTTTGACATCCCGCTGAGNNNNNNNNNNTACAAAAGTTTGTAAGCCTCAGCAAAAACTTCAAATCGCTCTAACTTGGCTCATTTTCAACCGACTTTGATGGATTTTGGGTCAATTTTTTTGAAATTTTACTCTTTTTTCAATGGAAAATGTTTGAAATTCTGAAAATTCAATTTGAAAACCTTAAAAAACTTAAAATCCTGAACATTCTTTAACAATTTTAATTCCTAAAAATCTGCAAAAAAGGAAAAAAATTCCAATTTCTAAGAAATTTCAAAAATCGTGAAATCTCTCATTCTCGTATTTTCTTTCTTTTTYCACTATTTTCGCTCAATGAAGCGGAAAAATTCTTATTCTAGCAAGAAAAAAAATTTCAGCATTTTAAGCACAACACTTTTTTTGTGTGGGTGTATTACTCTTTTTTTTGTGTGTGTGTGTTTCTGGTTTCAATTACTACTTTTTTCAATTTTAATCACAAAATTCATCTTTTCTGTTTCTGCTTTTCTGATTTCCTGGTAACATTTTCTTCATTTTCTGAATTATTCTTCCCTGAAATTTTTTTAAAAAACAAAGTTTTCCTTTTCAGTTTCACATGAATTTTAAATTTCTTGAAAAATAATGTTCAAGTTTTCTCAGTTACCCCTTTTTTTCTGAAAAGGCTGAAAATTTTGGGATTTTTGGATTTTTTTTTTCAAATTTCATCCAAATTTCAGAAATCCTCAGCTTTCCAGACTTTTTCCTTTAAAAAGTGGAAAAAAAAGAAAAAAATAATAATTAAATCCAAAAAAAAAGAAAAAGTGACAGAATTTTATTAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAATTCCTAAAAATCTGCAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGTAATTGAAACCAGAAACACAC</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>TTAATTCCTAAAAATCTGCAAAAAAGGAAAAAAATTCCAATTTCTAAGAAATTTCAAAAATCGTGAAATCTCTCATTCTCGTATTTTCTTTCTTTTTTCACTATTTTCGCTCAATGAAGCGGAAAAATTCTTATTCTAGCAAGAAAAAAAATTTCAGCATTTTAAGCACAACACTTTTTTTGTGTGGGTGTATTACTCTTTTTTTTGTGTGTGTGTGTTTCTGGTTTCAATTACT</canonical_amplicon>
		<polymorphic_amplicon>TTAATTCCTAAAAATCTGCAAAAAAGGAAAAAAATTCCAATTTCTAAGAAATTTCAAAAATCGTGAAATCTCTCATTCTCGTATTTTCTTTCTTTTTYCACTATTTTCGCTCAATGAAGCGGAAAAATTCTTATTCTAGCAAGAAAAAAAATTTCAGCATTTTAAGCACAACACTTTTTTTGTGTGGGTGTATTACTCTTTTTTTTGTGTGTGTGTGTTTCTGGTTTCAATTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23858</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>733569</contig_pos>
        <strand>+</strand>
        <context>GATTTTCGCT[A/T]TTTTATTACT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAACTAGAATTTTCGGCCCTTTTCGCTCCTAAATGAGCTGATTTTCGCT</left_flank>
        <right_flank>TTTTATTACTAACTACTAATCTGCTCCGTGCTGGGTGGTCTCTCCAGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAATAATCGTGAGCAATTTTAGACCATTTTTGGATCATTTCAGACCATTTTAGACCATTGTTGGATTATTTTAGACCATTTTGGATCGTTTTAGACTATTTCTGGATTATTTTAGACCATTTTCTGATCATTTTTGGGTCATTTCAGACCATTTTCGGATCATTTTTAGACCATTGTGGTCTTATTTAGTCCATTTCGGGTCATTTTTGACCATTTTCTAATCATTTTTGAATTATTTTTAGACCATTTTTGGACCATTTTGTTATATTTTAGATCCCTAATTGCATTAAAATGTGTGGAAAAATATTTAGATCAACTATTTAACTAGAATTTTTGGTATTTTAACTAGAATTTTTTGGAATTTCAACTAGAATTTTTGATATTCTAGCTAGAATTTTTGGTATTCTAACTAGAATTCTTGGTATTTTAACAAAAATTTTTAATATTTTAACTAGAATTTTCGGCCCTTTTCGCTCCTAAATGAGCTGATTTTCGCTTTTTTATTACTAACTACTAATCTGCTCCGTGCTGGGTGGTCTCTCCAGATTCTGATGTTGTGACGGCGTCACAAATTGTCTCAATCCCTTTACATCCACCTCATTGGCCGCTAATATATCCCTTAGATCCGGAATCGTCGCACAGAGGAATTGAAGTTGAGCTCGGATTCGTTGCAGGCGTCGTTTGTCTGAAAATATTAGATGTTTTGGTGTTTTAAGGCTATTATAGGTCTATTTTATCTTATTTTTCTGAATTTTGGTTATTTTTTCCTGAATTTTGGTTATACTTTTTCGGAATTTTGCCTGTTTTTTTTTGGGATTTTTTGTCATTTTTTTTTCTGAATTTCGGCCTTTTTTCTGAATTTCGATTATTTTTTTCCGGATTTAGGTCTTTTTTTCTAAATTCTGGCTAATTTTTTAAAAATTTTGTCAAATTTTTCCCGAATTTCGCCTTTTTTTTTGAATTTTGGCTAATTTTTTCTGAATTTTACCTTTTTTTTG</canonical>
            <polymorphic>TTGAATAATCGTGAGCAATTTTAGACCATTTTTGGATCATTTCAGACCATTTTAGACCATTGTTGGATTATTTTAGACCATTTTGGATCGTTTTAGACTATTTCTGGATTATTTTAGACCATTTTCTGATCATTTTTGGGTCATTTCAGACCATTTTCGGATCATTTTTAGACCATTGTGGTCTTATTTAGTCCATTTCGGGTCATTTTTGACCATTTTCTAATCATTTTTGAATTATTTTTAGACCATTTTTGGACCATTTTGTTATATTTTAGATCCCTAATTGCATTAAAATGTGTGGAAAAATATTTAGATCAACTATTTAACTAGAATTTTTGGTATTTTAACTAGAATTTTTTGGAATTTCAACTAGAATTTTTGATATTCTAGCTAGAATTTTTGGTATTCTAACTAGAATTCTTGGTATTTTAACAAAAATTTTTAATATTTTAACTAGAATTTTCGGCCCTTTTCGCTCCTAAATGAGCTGATTTTCGCTWTTTTATTACTAACTACTAATCTGCTCCGTGCTGGGTGGTCTCTCCAGATTCTGATGTTGTGACGGCGTCACAAATTGTCTCAATCCCTTTACATCCACCTCATTGGCCGCTAATATATCCCTTAGATCCGGAATCGTCGCACAGAGGAATTGAAGTTGAGCTCGGATTCGTTGCAGGCGTCGTTTGTCTGAAAATATTAGATGTTTTGGTGTTTTAAGGCTATTATAGGTCTATTTTATCTTATTTTTCTGAATTTTGGTTATTTTTTCCTGAATTTTGGTTATACTTTTTCGGAATTTTGCCTGTTTTTTTTTGGGATTTTTTGTCATTTTTTTTTCTGAATTTCGGCCTTTTTTCTGAATTTCGATTATTTTTTTCCGGATTTAGGTCTTTTTTTCTAAATTCTGGCTAATTTTTTAAAAATTTTGTCAAATTTTTCCCGAATTTCGCCTTTTTTTTTGAATTTTGGCTAATTTTTTCTGAATTTTACCTTTTTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGGAATTTCAACTAGAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTAAAGGGATTGAGACAATTT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TTTGGAATTTCAACTAGAATTTTTGATATTCTAGCTAGAATTTTTGGTATTCTAACTAGAATTCTTGGTATTTTAACAAAAATTTTTAATATTTTAACTAGAATTTTCGGCCCTTTTCGCTCCTAAATGAGCTGATTTTCGCTTTTTTATTACTAACTACTAATCTGCTCCGTGCTGGGTGGTCTCTCCAGATTCTGATGTTGTGACGGCGTCACAAATTGTCTCAATCCCTTTACAT</canonical_amplicon>
		<polymorphic_amplicon>TTTGGAATTTCAACTAGAATTTTTGATATTCTAGCTAGAATTTTTGGTATTCTAACTAGAATTCTTGGTATTTTAACAAAAATTTTTAATATTTTAACTAGAATTTTCGGCCCTTTTCGCTCCTAAATGAGCTGATTTTCGCTWTTTTATTACTAACTACTAATCTGCTCCGTGCTGGGTGGTCTCTCCAGATTCTGATGTTGTGACGGCGTCACAAATTGTCTCAATCCCTTTACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23859</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>764562</contig_pos>
        <strand></strand>
        <context>cgtgccatat[C/A]tttttaagga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CTAGCAAGAGAGCAGGCGCCAAAAAAGGAGTTTTCTTCCACGTGCCATAT</left_flank>
        <right_flank>TTTTTAAGGATTGATATTCAGAAAAAATTGTCAACAGCAAAAATGAAGCT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCATTTTTGTAGTAGACAACTTTTTTGAAAAATCAAGTTCTAAGGAGATATGCCAAGTGGAAGAGGGCTACCTTGCGGGGTGCCCAAACTAGCAAGGGAGCAGGCGCCAAACAGAGCACGCTCTTCCACGTGGCATATCTCTTCAGGGCTTGATTTTCAGAAAAGCTTGTCAACTACAAAAATGAAGCCCTAGTTTTGTTTAATGTACATAGCAAGTTTTAGCTAAATCCAAAAAGTTTGAAATAGGATTTTTAGAGATTCAAAAAGGATAGCCTGAAAATTTTCCGATTTTCAGTACAAACTTCAGAACCTCTGAAAATCTAGCTCTGATTTTTTCGATTTGTCTGAAAGTAGAGCTTCATTTTGTTAGTTGACAACTTTCTATGAAAACGCTTCTTAAAGAGGATACGCCACTTGAAAGAAGGTATACCTTGAGGCCCGCCCATCCTAGCAAGAGAGCAGGCGCCAAAAAAGGAGTTTTCTTCCACGTGCCATATCTTTTTAAGGATTGATATTCAGAAAAAATTGTCAACAGCAAAAATGAAGCTCTAGTCTTGCTTAGTGTACTCAGCAATTTTCAGCTAGATCCAAAGCTTTTGAGATACGATTTTCAGATTTTCAAAAAATTGTCAATTTTTCAAGTCATAGCAAGCACCAAAGTCAAAAAACTGGGTGAAAAATAATAAGCACCAAAAAATTAGACCCGACTGAATCGGCCCAAAAATTTCTTGCAAGCCGGACAAGTGTGAGTGACGTCACGCAGCTGGTCCAGGAAGAATGGGACACAACAGAAGCACCAAGGGATAATGAAAAGGAAGAGCCCGAGGAAGGCGAAAATGGCACAAATGATCCATGGAAGAATGCCGGAGACAAACTCAATGTGTGACACGATATGGTTCTGGAAATAGGGAGAAATTGGGATAGGGATAAGGTGGGAAAGGACTACAAATTACAAAAAAATTGGATAGAAACAAAGGTAAATAGATTTATAGTCGAAG</canonical>
            <polymorphic>CTCCATTTTTGTAGTAGACAACTTTTTTGAAAAATCAAGTTCTAAGGAGATATGCCAAGTGGAAGAGGGCTACCTTGCGGGGTGCCCAAACTAGCAAGGGAGCAGGCGCCAAACAGAGCACGCTCTTCCACGTGGCATATCTCTTCAGGGCTTGATTTTCAGAAAAGCTTGTCAACTACAAAAATGAAGCCCTAGTTTTGTTTAATGTACATAGCAAGTTTTAGCTAAATCCAAAAAGTTTGAAATAGGATTTTTAGAGATTCAAAAAGGATAGCCTGAAAATTTTCCGATTTTCAGTACAAACTTCAGAACCTCTGAAAATCTAGCTCTGATTTTTTCGATTTGTCTGAAAGTAGAGCTTCATTTTGTTAGTTGACAACTTTCTATGAAAACGCTTCTTAAAGAGGATACGCCACTTGAAAGAAGGTATACCTTGAGGCCCGCCCATCCTAGCAAGAGAGCAGGCGCCAAAAAAGGAGTTTTCTTCCACGTGCCATATMTTTTTAAGGATTGATATTCAGAAAAAATTGTCAACAGCAAAAATGAAGCTCTAGTCTTGCTTAGTGTACTCAGCAATTTTCAGCTAGATCCAAAGCTTTTGAGATACGATTTTCAGATTTTCAAAAAATTGTCAATTTTTCAAGTCATAGCAAGCACCAAAGTCAAAAAACTGGGTGAAAAATAATAAGCACCAAAAAATTAGACCCGACTGAATCGGCCCAAAAATTTCTTGCAAGCCGGACAAGTGTGAGTGACGTCACGCAGCTGGTCCAGGAAGAATGGGACACAACAGAAGCACCAAGGGATAATGAAAAGGAAGAGCCCGAGGAAGGCGAAAATGGCACAAATGATCCATGGAAGAATGCCGGAGACAAACTCAATGTGTGACACGATATGGTTCTGGAAATAGGGAGAAATTGGGATAGGGATAAGGTGGGAAAGGACTACAAATTACAAAAAAATTGGATAGAAACAAAGGTAAATAGATTTATAGTCGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGTTAACTTGAAAATTGAAACT</pcr_primer_p1>
		<pcr_primer_p2>ACTTTGGTGCTTGCTATGAC</pcr_primer_p2>
		<pcr_amplicon_size>775</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTTAAGGATTGATATTCAGAAAAAATTGTCAACAGCAAAAATGAAGCTCTAGTCTTGCTTAGTGTACTCAGCAATTTTCAGCTAGATCCAAAGCTTTTGAGATACGATTTTCAGATTTTCAAAAAATTGTCAATTTTTCAAGTCATAGCAAGCACCAAAGT</canonical_amplicon>
		<polymorphic_amplicon>TMTTTTTAAGGATTGATATTCAGAAAAAATTGTCAACAGCAAAAATGAAGCTCTAGTCTTGCTTAGTGTACTCAGCAATTTTCAGCTAGATCCAAAGCTTTTGAGATACGATTTTCAGATTTTCAAAAAATTGTCAATTTTTCAAGTCATAGCAAGCACCAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23860</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>764657</contig_pos>
        <strand></strand>
        <context>tagatccaaa[G/A]mttttgagat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAAGCTCTAGTCTTGCTTAGTGTACTCAGCAATTTTCAGCTAGATCCAAA</left_flank>
        <right_flank>CTTTTGAGATACGATTTTCAGATTTTCAAAAAATTGTCAATTTTTCAAGT</right_flank>
        <qual_score>46</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGGGAGCAGGCGCCAAACAGAGCACGCTCTTCCACGTGGCATATCTCTTCAGGGCTTGATTTTCAGAAAAGCTTGTCAACTACAAAAATGAAGCCCTAGTTTTGTTTAATGTACATAGCAAGTTTTAGCTAAATCCAAAAAGTTTGAAATAGGATTTTTAGAGATTCAAAAAGGATAGCCTGAAAATTTTCCGATTTTCAGTACAAACTTCAGAACCTCTGAAAATCTAGCTCTGATTTTTTCGATTTGTCTGAAAGTAGAGCTTCATTTTGTTAGTTGACAACTTTCTATGAAAACGCTTCTTAAAGAGGATACGCCACTTGAAAGAAGGTATACCTTGAGGCCCGCCCATCCTAGCAAGAGAGCAGGCGCCAAAAAAGGAGTTTTCTTCCACGTGCCATATCTTTTTAAGGATTGATATTCAGAAAAAATTGTCAACAGCAAAAATGAAGCTCTAGTCTTGCTTAGTGTACTCAGCAATTTTCAGCTAGATCCAAAGCTTTTGAGATACGATTTTCAGATTTTCAAAAAATTGTCAATTTTTCAAGTCATAGCAAGCACCAAAGTCAAAAAACTGGGTGAAAAATAATAAGCACCAAAAAATTAGACCCGACTGAATCGGCCCAAAAATTTCTTGCAAGCCGGACAAGTGTGAGTGACGTCACGCAGCTGGTCCAGGAAGAATGGGACACAACAGAAGCACCAAGGGATAATGAAAAGGAAGAGCCCGAGGAAGGCGAAAATGGCACAAATGATCCATGGAAGAATGCCGGAGACAAACTCAATGTGTGACACGATATGGTTCTGGAAATAGGGAGAAATTGGGATAGGGATAAGGTGGGAAAGGACTACAAATTACAAAAAAATTGGATAGAAACAAAGGTAAATAGATTTATAGTCGAAGTTTTTGATTTGCCTGAAAATCTAGCTCAACTTTATTGGATCTGTCTGAAAATCTCAGAGTCTGCTAAACAAATCTAGTGTTTTATTTTTGTAATC</canonical>
            <polymorphic>AAGGGAGCAGGCGCCAAACAGAGCACGCTCTTCCACGTGGCATATCTCTTCAGGGCTTGATTTTCAGAAAAGCTTGTCAACTACAAAAATGAAGCCCTAGTTTTGTTTAATGTACATAGCAAGTTTTAGCTAAATCCAAAAAGTTTGAAATAGGATTTTTAGAGATTCAAAAAGGATAGCCTGAAAATTTTCCGATTTTCAGTACAAACTTCAGAACCTCTGAAAATCTAGCTCTGATTTTTTCGATTTGTCTGAAAGTAGAGCTTCATTTTGTTAGTTGACAACTTTCTATGAAAACGCTTCTTAAAGAGGATACGCCACTTGAAAGAAGGTATACCTTGAGGCCCGCCCATCCTAGCAAGAGAGCAGGCGCCAAAAAAGGAGTTTTCTTCCACGTGCCATATCTTTTTAAGGATTGATATTCAGAAAAAATTGTCAACAGCAAAAATGAAGCTCTAGTCTTGCTTAGTGTACTCAGCAATTTTCAGCTAGATCCAAARCTTTTGAGATACGATTTTCAGATTTTCAAAAAATTGTCAATTTTTCAAGTCATAGCAAGCACCAAAGTCAAAAAACTGGGTGAAAAATAATAAGCACCAAAAAATTAGACCCGACTGAATCGGCCCAAAAATTTCTTGCAAGCCGGACAAGTGTGAGTGACGTCACGCAGCTGGTCCAGGAAGAATGGGACACAACAGAAGCACCAAGGGATAATGAAAAGGAAGAGCCCGAGGAAGGCGAAAATGGCACAAATGATCCATGGAAGAATGCCGGAGACAAACTCAATGTGTGACACGATATGGTTCTGGAAATAGGGAGAAATTGGGATAGGGATAAGGTGGGAAAGGACTACAAATTACAAAAAAATTGGATAGAAACAAAGGTAAATAGATTTATAGTCGAAGTTTTTGATTTGCCTGAAAATCTAGCTCAACTTTATTGGATCTGTCTGAAAATCTCAGAGTCTGCTAAACAAATCTAGTGTTTTATTTTTGTAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>259 190 170 102 72 71 57 35 32 12</canonical_bands>
                <polymorphic_bands>259 190 182 102 72 71 57 35 32</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>202 123 109 81 71 57 55 52 50 35 35 32 28 22 19 17 12</canonical_bands>
                <polymorphic_bands>202 135 109 81 71 57 55 52 50 35 35 32 28 22 19 17</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 428 70</canonical_bands>
                <polymorphic_bands>930 70</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGTTAACTTGAAAATTGAAACT</pcr_primer_p1>
		<pcr_primer_p2>ACTTTGGTGCTTGCTATGAC</pcr_primer_p2>
		<pcr_amplicon_size>775</pcr_amplicon_size>
		<canonical_amplicon>AGCTTTTGAGATACGATTTTCAGATTTTCAAAAAATTGTCAATTTTTCAAGTCATAGCAAGCACCAAAGT</canonical_amplicon>
		<polymorphic_amplicon>ARCTTTTGAGATACGATTTTCAGATTTTCAAAAAATTGTCAATTTTTCAAGTCATAGCAAGCACCAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23861</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>764658</contig_pos>
        <strand></strand>
        <context>agatccaaar[C/A]ttttgagata</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AAGCTCTAGTCTTGCTTAGTGTACTCAGCAATTTTCAGCTAGATCCAAAG</left_flank>
        <right_flank>TTTTGAGATACGATTTTCAGATTTTCAAAAAATTGTCAATTTTTCAAGTC</right_flank>
        <qual_score>46</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGGAGCAGGCGCCAAACAGAGCACGCTCTTCCACGTGGCATATCTCTTCAGGGCTTGATTTTCAGAAAAGCTTGTCAACTACAAAAATGAAGCCCTAGTTTTGTTTAATGTACATAGCAAGTTTTAGCTAAATCCAAAAAGTTTGAAATAGGATTTTTAGAGATTCAAAAAGGATAGCCTGAAAATTTTCCGATTTTCAGTACAAACTTCAGAACCTCTGAAAATCTAGCTCTGATTTTTTCGATTTGTCTGAAAGTAGAGCTTCATTTTGTTAGTTGACAACTTTCTATGAAAACGCTTCTTAAAGAGGATACGCCACTTGAAAGAAGGTATACCTTGAGGCCCGCCCATCCTAGCAAGAGAGCAGGCGCCAAAAAAGGAGTTTTCTTCCACGTGCCATATCTTTTTAAGGATTGATATTCAGAAAAAATTGTCAACAGCAAAAATGAAGCTCTAGTCTTGCTTAGTGTACTCAGCAATTTTCAGCTAGATCCAAAGCTTTTGAGATACGATTTTCAGATTTTCAAAAAATTGTCAATTTTTCAAGTCATAGCAAGCACCAAAGTCAAAAAACTGGGTGAAAAATAATAAGCACCAAAAAATTAGACCCGACTGAATCGGCCCAAAAATTTCTTGCAAGCCGGACAAGTGTGAGTGACGTCACGCAGCTGGTCCAGGAAGAATGGGACACAACAGAAGCACCAAGGGATAATGAAAAGGAAGAGCCCGAGGAAGGCGAAAATGGCACAAATGATCCATGGAAGAATGCCGGAGACAAACTCAATGTGTGACACGATATGGTTCTGGAAATAGGGAGAAATTGGGATAGGGATAAGGTGGGAAAGGACTACAAATTACAAAAAAATTGGATAGAAACAAAGGTAAATAGATTTATAGTCGAAGTTTTTGATTTGCCTGAAAATCTAGCTCAACTTTATTGGATCTGTCTGAAAATCTCAGAGTCTGCTAAACAAATCTAGTGTTTTATTTTTGTAATCG</canonical>
            <polymorphic>AGGGAGCAGGCGCCAAACAGAGCACGCTCTTCCACGTGGCATATCTCTTCAGGGCTTGATTTTCAGAAAAGCTTGTCAACTACAAAAATGAAGCCCTAGTTTTGTTTAATGTACATAGCAAGTTTTAGCTAAATCCAAAAAGTTTGAAATAGGATTTTTAGAGATTCAAAAAGGATAGCCTGAAAATTTTCCGATTTTCAGTACAAACTTCAGAACCTCTGAAAATCTAGCTCTGATTTTTTCGATTTGTCTGAAAGTAGAGCTTCATTTTGTTAGTTGACAACTTTCTATGAAAACGCTTCTTAAAGAGGATACGCCACTTGAAAGAAGGTATACCTTGAGGCCCGCCCATCCTAGCAAGAGAGCAGGCGCCAAAAAAGGAGTTTTCTTCCACGTGCCATATCTTTTTAAGGATTGATATTCAGAAAAAATTGTCAACAGCAAAAATGAAGCTCTAGTCTTGCTTAGTGTACTCAGCAATTTTCAGCTAGATCCAAAGMTTTTGAGATACGATTTTCAGATTTTCAAAAAATTGTCAATTTTTCAAGTCATAGCAAGCACCAAAGTCAAAAAACTGGGTGAAAAATAATAAGCACCAAAAAATTAGACCCGACTGAATCGGCCCAAAAATTTCTTGCAAGCCGGACAAGTGTGAGTGACGTCACGCAGCTGGTCCAGGAAGAATGGGACACAACAGAAGCACCAAGGGATAATGAAAAGGAAGAGCCCGAGGAAGGCGAAAATGGCACAAATGATCCATGGAAGAATGCCGGAGACAAACTCAATGTGTGACACGATATGGTTCTGGAAATAGGGAGAAATTGGGATAGGGATAAGGTGGGAAAGGACTACAAATTACAAAAAAATTGGATAGAAACAAAGGTAAATAGATTTATAGTCGAAGTTTTTGATTTGCCTGAAAATCTAGCTCAACTTTATTGGATCTGTCTGAAAATCTCAGAGTCTGCTAAACAAATCTAGTGTTTTATTTTTGTAATCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>259 190 170 102 72 71 57 35 32 12</canonical_bands>
                <polymorphic_bands>259 190 182 102 72 71 57 35 32</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>202 123 109 81 72 57 54 52 50 35 35 32 28 22 19 17 12</canonical_bands>
                <polymorphic_bands>202 135 109 81 72 57 54 52 50 35 35 32 28 22 19 17</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 428 69</canonical_bands>
                <polymorphic_bands>931 69</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGTTAACTTGAAAATTGAAACT</pcr_primer_p1>
		<pcr_primer_p2>ACTTTGGTGCTTGCTATGAC</pcr_primer_p2>
		<pcr_amplicon_size>775</pcr_amplicon_size>
		<canonical_amplicon>GCTTTTGAGATACGATTTTCAGATTTTCAAAAAATTGTCAATTTTTCAAGTCATAGCAAGCACCAAAGT</canonical_amplicon>
		<polymorphic_amplicon>GMTTTTGAGATACGATTTTCAGATTTTCAAAAAATTGTCAATTTTTCAAGTCATAGCAAGCACCAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23862</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>764679</contig_pos>
        <strand></strand>
        <context>cgattttcag[A/T]ttttcaaaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TACTCAGCAATTTTCAGCTAGATCCAAAGCTTTTGAGATACGATTTTCAG</left_flank>
        <right_flank>TTTTCAAAAAATTGTCAATTTTTCAAGTCATAGCAAGCACCAAAGTCAAA</right_flank>
        <qual_score>49</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCACGCTCTTCCACGTGGCATATCTCTTCAGGGCTTGATTTTCAGAAAAGCTTGTCAACTACAAAAATGAAGCCCTAGTTTTGTTTAATGTACATAGCAAGTTTTAGCTAAATCCAAAAAGTTTGAAATAGGATTTTTAGAGATTCAAAAAGGATAGCCTGAAAATTTTCCGATTTTCAGTACAAACTTCAGAACCTCTGAAAATCTAGCTCTGATTTTTTCGATTTGTCTGAAAGTAGAGCTTCATTTTGTTAGTTGACAACTTTCTATGAAAACGCTTCTTAAAGAGGATACGCCACTTGAAAGAAGGTATACCTTGAGGCCCGCCCATCCTAGCAAGAGAGCAGGCGCCAAAAAAGGAGTTTTCTTCCACGTGCCATATCTTTTTAAGGATTGATATTCAGAAAAAATTGTCAACAGCAAAAATGAAGCTCTAGTCTTGCTTAGTGTACTCAGCAATTTTCAGCTAGATCCAAAGCTTTTGAGATACGATTTTCAGATTTTCAAAAAATTGTCAATTTTTCAAGTCATAGCAAGCACCAAAGTCAAAAAACTGGGTGAAAAATAATAAGCACCAAAAAATTAGACCCGACTGAATCGGCCCAAAAATTTCTTGCAAGCCGGACAAGTGTGAGTGACGTCACGCAGCTGGTCCAGGAAGAATGGGACACAACAGAAGCACCAAGGGATAATGAAAAGGAAGAGCCCGAGGAAGGCGAAAATGGCACAAATGATCCATGGAAGAATGCCGGAGACAAACTCAATGTGTGACACGATATGGTTCTGGAAATAGGGAGAAATTGGGATAGGGATAAGGTGGGAAAGGACTACAAATTACAAAAAAATTGGATAGAAACAAAGGTAAATAGATTTATAGTCGAAGTTTTTGATTTGCCTGAAAATCTAGCTCAACTTTATTGGATCTGTCTGAAAATCTCAGAGTCTGCTAAACAAATCTAGTGTTTTATTTTTGTAATCGACACTATTTTTTCTGAAAATC</canonical>
            <polymorphic>GCACGCTCTTCCACGTGGCATATCTCTTCAGGGCTTGATTTTCAGAAAAGCTTGTCAACTACAAAAATGAAGCCCTAGTTTTGTTTAATGTACATAGCAAGTTTTAGCTAAATCCAAAAAGTTTGAAATAGGATTTTTAGAGATTCAAAAAGGATAGCCTGAAAATTTTCCGATTTTCAGTACAAACTTCAGAACCTCTGAAAATCTAGCTCTGATTTTTTCGATTTGTCTGAAAGTAGAGCTTCATTTTGTTAGTTGACAACTTTCTATGAAAACGCTTCTTAAAGAGGATACGCCACTTGAAAGAAGGTATACCTTGAGGCCCGCCCATCCTAGCAAGAGAGCAGGCGCCAAAAAAGGAGTTTTCTTCCACGTGCCATATCTTTTTAAGGATTGATATTCAGAAAAAATTGTCAACAGCAAAAATGAAGCTCTAGTCTTGCTTAGTGTACTCAGCAATTTTCAGCTAGATCCAAAGCTTTTGAGATACGATTTTCAGWTTTTCAAAAAATTGTCAATTTTTCAAGTCATAGCAAGCACCAAAGTCAAAAAACTGGGTGAAAAATAATAAGCACCAAAAAATTAGACCCGACTGAATCGGCCCAAAAATTTCTTGCAAGCCGGACAAGTGTGAGTGACGTCACGCAGCTGGTCCAGGAAGAATGGGACACAACAGAAGCACCAAGGGATAATGAAAAGGAAGAGCCCGAGGAAGGCGAAAATGGCACAAATGATCCATGGAAGAATGCCGGAGACAAACTCAATGTGTGACACGATATGGTTCTGGAAATAGGGAGAAATTGGGATAGGGATAAGGTGGGAAAGGACTACAAATTACAAAAAAATTGGATAGAAACAAAGGTAAATAGATTTATAGTCGAAGTTTTTGATTTGCCTGAAAATCTAGCTCAACTTTATTGGATCTGTCTGAAAATCTCAGAGTCTGCTAAACAAATCTAGTGTTTTATTTTTGTAATCGACACTATTTTTTCTGAAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>431 172 127 95 54 44 20 18 14 10 8 7</canonical_bands>
                <polymorphic_bands>526 172 127 54 44 20 18 14 10 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGGGAAGGGTTAACTTGAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTCAGTCGGGTCTAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>834</pcr_amplicon_size>
		<canonical_amplicon>GATTTTCAAAAAATTGTCAATTTTTCAAGTCATAGCAAGCACCAAAGTCAAAAAACTGGGTGAAAAATAATAAGCACCAAAAAATTAGACCCGACTGAAT</canonical_amplicon>
		<polymorphic_amplicon>GWTTTTCAAAAAATTGTCAATTTTTCAAGTCATAGCAAGCACCAAAGTCAAAAAACTGGGTGAAAAATAATAAGCACCAAAAAATTAGACCCGACTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23863</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>764693</contig_pos>
        <strand></strand>
        <context>tcaaaaaatt[G/A]tcAATTTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAGCTAGATCCAAAGCTTTTGAGATACGATTTTCAGATTTTCAAAAAATT</left_flank>
        <right_flank>TCAATTTTTCAAGTCATAGCAAGCACCAAAGTCAAAAAACTGGGTGAAAA</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGCATATCTCTTCAGGGCTTGATTTTCAGAAAAGCTTGTCAACTACAAAAATGAAGCCCTAGTTTTGTTTAATGTACATAGCAAGTTTTAGCTAAATCCAAAAAGTTTGAAATAGGATTTTTAGAGATTCAAAAAGGATAGCCTGAAAATTTTCCGATTTTCAGTACAAACTTCAGAACCTCTGAAAATCTAGCTCTGATTTTTTCGATTTGTCTGAAAGTAGAGCTTCATTTTGTTAGTTGACAACTTTCTATGAAAACGCTTCTTAAAGAGGATACGCCACTTGAAAGAAGGTATACCTTGAGGCCCGCCCATCCTAGCAAGAGAGCAGGCGCCAAAAAAGGAGTTTTCTTCCACGTGCCATATCTTTTTAAGGATTGATATTCAGAAAAAATTGTCAACAGCAAAAATGAAGCTCTAGTCTTGCTTAGTGTACTCAGCAATTTTCAGCTAGATCCAAAGCTTTTGAGATACGATTTTCAGATTTTCAAAAAATTGTCAATTTTTCAAGTCATAGCAAGCACCAAAGTCAAAAAACTGGGTGAAAAATAATAAGCACCAAAAAATTAGACCCGACTGAATCGGCCCAAAAATTTCTTGCAAGCCGGACAAGTGTGAGTGACGTCACGCAGCTGGTCCAGGAAGAATGGGACACAACAGAAGCACCAAGGGATAATGAAAAGGAAGAGCCCGAGGAAGGCGAAAATGGCACAAATGATCCATGGAAGAATGCCGGAGACAAACTCAATGTGTGACACGATATGGTTCTGGAAATAGGGAGAAATTGGGATAGGGATAAGGTGGGAAAGGACTACAAATTACAAAAAAATTGGATAGAAACAAAGGTAAATAGATTTATAGTCGAAGTTTTTGATTTGCCTGAAAATCTAGCTCAACTTTATTGGATCTGTCTGAAAATCTCAGAGTCTGCTAAACAAATCTAGTGTTTTATTTTTGTAATCGACACTATTTTTTCTGAAAATCANNNNNNNNNNNNN</canonical>
            <polymorphic>GTGGCATATCTCTTCAGGGCTTGATTTTCAGAAAAGCTTGTCAACTACAAAAATGAAGCCCTAGTTTTGTTTAATGTACATAGCAAGTTTTAGCTAAATCCAAAAAGTTTGAAATAGGATTTTTAGAGATTCAAAAAGGATAGCCTGAAAATTTTCCGATTTTCAGTACAAACTTCAGAACCTCTGAAAATCTAGCTCTGATTTTTTCGATTTGTCTGAAAGTAGAGCTTCATTTTGTTAGTTGACAACTTTCTATGAAAACGCTTCTTAAAGAGGATACGCCACTTGAAAGAAGGTATACCTTGAGGCCCGCCCATCCTAGCAAGAGAGCAGGCGCCAAAAAAGGAGTTTTCTTCCACGTGCCATATCTTTTTAAGGATTGATATTCAGAAAAAATTGTCAACAGCAAAAATGAAGCTCTAGTCTTGCTTAGTGTACTCAGCAATTTTCAGCTAGATCCAAAGCTTTTGAGATACGATTTTCAGATTTTCAAAAAATTRTCAATTTTTCAAGTCATAGCAAGCACCAAAGTCAAAAAACTGGGTGAAAAATAATAAGCACCAAAAAATTAGACCCGACTGAATCGGCCCAAAAATTTCTTGCAAGCCGGACAAGTGTGAGTGACGTCACGCAGCTGGTCCAGGAAGAATGGGACACAACAGAAGCACCAAGGGATAATGAAAAGGAAGAGCCCGAGGAAGGCGAAAATGGCACAAATGATCCATGGAAGAATGCCGGAGACAAACTCAATGTGTGACACGATATGGTTCTGGAAATAGGGAGAAATTGGGATAGGGATAAGGTGGGAAAGGACTACAAATTACAAAAAAATTGGATAGAAACAAAGGTAAATAGATTTATAGTCGAAGTTTTTGATTTGCCTGAAAATCTAGCTCAACTTTATTGGATCTGTCTGAAAATCTCAGAGTCTGCTAAACAAATCTAGTGTTTTATTTTTGTAATCGACACTATTTTTTCTGAAAATCANNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGGGAAGGGTTAACTTGAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTCAGTCGGGTCTAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>834</pcr_amplicon_size>
		<canonical_amplicon>TGTCAATTTTTCAAGTCATAGCAAGCACCAAAGTCAAAAAACTGGGTGAAAAATAATAAGCACCAAAAAATTAGACCCGACTGAAT</canonical_amplicon>
		<polymorphic_amplicon>TRTCAATTTTTCAAGTCATAGCAAGCACCAAAGTCAAAAAACTGGGTGAAAAATAATAAGCACCAAAAAATTAGACCCGACTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23864</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>764705</contig_pos>
        <strand>+</strand>
        <context>cAATTTTTCA[A/T]GTCATAGCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGCTTTTGAGATACGATTTTCAGATTTTCAAAAAATTGTCAATTTTTCA</left_flank>
        <right_flank>GTCATAGCAAGCACCAAAGTCAAAAAACTGGGTGAAAAATAATAAGCACC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAGGGCTTGATTTTCAGAAAAGCTTGTCAACTACAAAAATGAAGCCCTAGTTTTGTTTAATGTACATAGCAAGTTTTAGCTAAATCCAAAAAGTTTGAAATAGGATTTTTAGAGATTCAAAAAGGATAGCCTGAAAATTTTCCGATTTTCAGTACAAACTTCAGAACCTCTGAAAATCTAGCTCTGATTTTTTCGATTTGTCTGAAAGTAGAGCTTCATTTTGTTAGTTGACAACTTTCTATGAAAACGCTTCTTAAAGAGGATACGCCACTTGAAAGAAGGTATACCTTGAGGCCCGCCCATCCTAGCAAGAGAGCAGGCGCCAAAAAAGGAGTTTTCTTCCACGTGCCATATCTTTTTAAGGATTGATATTCAGAAAAAATTGTCAACAGCAAAAATGAAGCTCTAGTCTTGCTTAGTGTACTCAGCAATTTTCAGCTAGATCCAAAGCTTTTGAGATACGATTTTCAGATTTTCAAAAAATTGTCAATTTTTCAAGTCATAGCAAGCACCAAAGTCAAAAAACTGGGTGAAAAATAATAAGCACCAAAAAATTAGACCCGACTGAATCGGCCCAAAAATTTCTTGCAAGCCGGACAAGTGTGAGTGACGTCACGCAGCTGGTCCAGGAAGAATGGGACACAACAGAAGCACCAAGGGATAATGAAAAGGAAGAGCCCGAGGAAGGCGAAAATGGCACAAATGATCCATGGAAGAATGCCGGAGACAAACTCAATGTGTGACACGATATGGTTCTGGAAATAGGGAGAAATTGGGATAGGGATAAGGTGGGAAAGGACTACAAATTACAAAAAAATTGGATAGAAACAAAGGTAAATAGATTTATAGTCGAAGTTTTTGATTTGCCTGAAAATCTAGCTCAACTTTATTGGATCTGTCTGAAAATCTCAGAGTCTGCTAAACAAATCTAGTGTTTTATTTTTGTAATCGACACTATTTTTTCTGAAAATCANNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>TTCAGGGCTTGATTTTCAGAAAAGCTTGTCAACTACAAAAATGAAGCCCTAGTTTTGTTTAATGTACATAGCAAGTTTTAGCTAAATCCAAAAAGTTTGAAATAGGATTTTTAGAGATTCAAAAAGGATAGCCTGAAAATTTTCCGATTTTCAGTACAAACTTCAGAACCTCTGAAAATCTAGCTCTGATTTTTTCGATTTGTCTGAAAGTAGAGCTTCATTTTGTTAGTTGACAACTTTCTATGAAAACGCTTCTTAAAGAGGATACGCCACTTGAAAGAAGGTATACCTTGAGGCCCGCCCATCCTAGCAAGAGAGCAGGCGCCAAAAAAGGAGTTTTCTTCCACGTGCCATATCTTTTTAAGGATTGATATTCAGAAAAAATTGTCAACAGCAAAAATGAAGCTCTAGTCTTGCTTAGTGTACTCAGCAATTTTCAGCTAGATCCAAAGCTTTTGAGATACGATTTTCAGATTTTCAAAAAATTGTCAATTTTTCAWGTCATAGCAAGCACCAAAGTCAAAAAACTGGGTGAAAAATAATAAGCACCAAAAAATTAGACCCGACTGAATCGGCCCAAAAATTTCTTGCAAGCCGGACAAGTGTGAGTGACGTCACGCAGCTGGTCCAGGAAGAATGGGACACAACAGAAGCACCAAGGGATAATGAAAAGGAAGAGCCCGAGGAAGGCGAAAATGGCACAAATGATCCATGGAAGAATGCCGGAGACAAACTCAATGTGTGACACGATATGGTTCTGGAAATAGGGAGAAATTGGGATAGGGATAAGGTGGGAAAGGACTACAAATTACAAAAAAATTGGATAGAAACAAAGGTAAATAGATTTATAGTCGAAGTTTTTGATTTGCCTGAAAATCTAGCTCAACTTTATTGGATCTGTCTGAAAATCTCAGAGTCTGCTAAACAAATCTAGTGTTTTATTTTTGTAATCGACACTATTTTTTCTGAAAATCANNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGGGAAGGGTTAACTTGAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTCAGTCGGGTCTAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>834</pcr_amplicon_size>
		<canonical_amplicon>AAGTCATAGCAAGCACCAAAGTCAAAAAACTGGGTGAAAAATAATAAGCACCAAAAAATTAGACCCGACTGAAT</canonical_amplicon>
		<polymorphic_amplicon>AWGTCATAGCAAGCACCAAAGTCAAAAAACTGGGTGAAAAATAATAAGCACCAAAAAATTAGACCCGACTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23865</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>764738</contig_pos>
        <strand>+</strand>
        <context>AAAAACTGGG[G/T]GAAAAATAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATTGTCAATTTTTCAAGTCATAGCAAGCACCAAAGTCAAAAAACTGGG</left_flank>
        <right_flank>GAAAAATAATAAGCACCAAAAAATTAGACCCGACTGAATCGGCCCAAAAA</right_flank>
        <qual_score>149</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACAAAAATGAAGCCCTAGTTTTGTTTAATGTACATAGCAAGTTTTAGCTAAATCCAAAAAGTTTGAAATAGGATTTTTAGAGATTCAAAAAGGATAGCCTGAAAATTTTCCGATTTTCAGTACAAACTTCAGAACCTCTGAAAATCTAGCTCTGATTTTTTCGATTTGTCTGAAAGTAGAGCTTCATTTTGTTAGTTGACAACTTTCTATGAAAACGCTTCTTAAAGAGGATACGCCACTTGAAAGAAGGTATACCTTGAGGCCCGCCCATCCTAGCAAGAGAGCAGGCGCCAAAAAAGGAGTTTTCTTCCACGTGCCATATCTTTTTAAGGATTGATATTCAGAAAAAATTGTCAACAGCAAAAATGAAGCTCTAGTCTTGCTTAGTGTACTCAGCAATTTTCAGCTAGATCCAAAGCTTTTGAGATACGATTTTCAGATTTTCAAAAAATTGTCAATTTTTCAAGTCATAGCAAGCACCAAAGTCAAAAAACTGGGTGAAAAATAATAAGCACCAAAAAATTAGACCCGACTGAATCGGCCCAAAAATTTCTTGCAAGCCGGACAAGTGTGAGTGACGTCACGCAGCTGGTCCAGGAAGAATGGGACACAACAGAAGCACCAAGGGATAATGAAAAGGAAGAGCCCGAGGAAGGCGAAAATGGCACAAATGATCCATGGAAGAATGCCGGAGACAAACTCAATGTGTGACACGATATGGTTCTGGAAATAGGGAGAAATTGGGATAGGGATAAGGTGGGAAAGGACTACAAATTACAAAAAAATTGGATAGAAACAAAGGTAAATAGATTTATAGTCGAAGTTTTTGATTTGCCTGAAAATCTAGCTCAACTTTATTGGATCTGTCTGAAAATCTCAGAGTCTGCTAAACAAATCTAGTGTTTTATTTTTGTAATCGACACTATTTTTTCTGAAAATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>TACAAAAATGAAGCCCTAGTTTTGTTTAATGTACATAGCAAGTTTTAGCTAAATCCAAAAAGTTTGAAATAGGATTTTTAGAGATTCAAAAAGGATAGCCTGAAAATTTTCCGATTTTCAGTACAAACTTCAGAACCTCTGAAAATCTAGCTCTGATTTTTTCGATTTGTCTGAAAGTAGAGCTTCATTTTGTTAGTTGACAACTTTCTATGAAAACGCTTCTTAAAGAGGATACGCCACTTGAAAGAAGGTATACCTTGAGGCCCGCCCATCCTAGCAAGAGAGCAGGCGCCAAAAAAGGAGTTTTCTTCCACGTGCCATATCTTTTTAAGGATTGATATTCAGAAAAAATTGTCAACAGCAAAAATGAAGCTCTAGTCTTGCTTAGTGTACTCAGCAATTTTCAGCTAGATCCAAAGCTTTTGAGATACGATTTTCAGATTTTCAAAAAATTGTCAATTTTTCAAGTCATAGCAAGCACCAAAGTCAAAAAACTGGGKGAAAAATAATAAGCACCAAAAAATTAGACCCGACTGAATCGGCCCAAAAATTTCTTGCAAGCCGGACAAGTGTGAGTGACGTCACGCAGCTGGTCCAGGAAGAATGGGACACAACAGAAGCACCAAGGGATAATGAAAAGGAAGAGCCCGAGGAAGGCGAAAATGGCACAAATGATCCATGGAAGAATGCCGGAGACAAACTCAATGTGTGACACGATATGGTTCTGGAAATAGGGAGAAATTGGGATAGGGATAAGGTGGGAAAGGACTACAAATTACAAAAAAATTGGATAGAAACAAAGGTAAATAGATTTATAGTCGAAGTTTTTGATTTGCCTGAAAATCTAGCTCAACTTTATTGGATCTGTCTGAAAATCTCAGAGTCTGCTAAACAAATCTAGTGTTTTATTTTTGTAATCGACACTATTTTTTCTGAAAATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>239 143 90 77 74 73 57 46 46 41 27 21 20 14 11 6 4 4 3 2 2</canonical_bands>
                <polymorphic_bands>239 143 90 77 74 73 57 46 46 41 35 27 20 11 6 4 4 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGTTAACTTGAAAATTGAAACT</pcr_primer_p1>
		<pcr_primer_p2>TGACGTCACTCACACTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>872</pcr_amplicon_size>
		<canonical_amplicon>GTGAAAAATAATAAGCACCAAAAAATTAGACCCGACTGAATCGGCCCAAAAATTTCTTGCAAGCCGGACAAGTGTGAGTGACGTCA</canonical_amplicon>
		<polymorphic_amplicon>GKGAAAAATAATAAGCACCAAAAAATTAGACCCGACTGAATCGGCCCAAAAATTTCTTGCAAGCCGGACAAGTGTGAGTGACGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23866</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>764834</contig_pos>
        <strand>+</strand>
        <context>GCAGCTGGTC[C/T]AGGAAGAATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATTTCTTGCAAGCCGGACAAGTGTGAGTGACGTCACGCAGCTGGTC</left_flank>
        <right_flank>AGGAAGAATGGGACACAACAGAAGCACCAAGGGATAATGAAAAGGAAGAG</right_flank>
        <qual_score>148</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCCTGAAAATTTTCCGATTTTCAGTACAAACTTCAGAACCTCTGAAAATCTAGCTCTGATTTTTTCGATTTGTCTGAAAGTAGAGCTTCATTTTGTTAGTTGACAACTTTCTATGAAAACGCTTCTTAAAGAGGATACGCCACTTGAAAGAAGGTATACCTTGAGGCCCGCCCATCCTAGCAAGAGAGCAGGCGCCAAAAAAGGAGTTTTCTTCCACGTGCCATATCTTTTTAAGGATTGATATTCAGAAAAAATTGTCAACAGCAAAAATGAAGCTCTAGTCTTGCTTAGTGTACTCAGCAATTTTCAGCTAGATCCAAAGCTTTTGAGATACGATTTTCAGATTTTCAAAAAATTGTCAATTTTTCAAGTCATAGCAAGCACCAAAGTCAAAAAACTGGGTGAAAAATAATAAGCACCAAAAAATTAGACCCGACTGAATCGGCCCAAAAATTTCTTGCAAGCCGGACAAGTGTGAGTGACGTCACGCAGCTGGTCCAGGAAGAATGGGACACAACAGAAGCACCAAGGGATAATGAAAAGGAAGAGCCCGAGGAAGGCGAAAATGGCACAAATGATCCATGGAAGAATGCCGGAGACAAACTCAATGTGTGACACGATATGGTTCTGGAAATAGGGAGAAATTGGGATAGGGATAAGGTGGGAAAGGACTACAAATTACAAAAAAATTGGATAGAAACAAAGGTAAATAGATTTATAGTCGAAGTTTTTGATTTGCCTGAAAATCTAGCTCAACTTTATTGGATCTGTCTGAAAATCTCAGAGTCTGCTAAACAAATCTAGTGTTTTATTTTTGTAATCGACACTATTTTTTCTGAAAATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>AGCCTGAAAATTTTCCGATTTTCAGTACAAACTTCAGAACCTCTGAAAATCTAGCTCTGATTTTTTCGATTTGTCTGAAAGTAGAGCTTCATTTTGTTAGTTGACAACTTTCTATGAAAACGCTTCTTAAAGAGGATACGCCACTTGAAAGAAGGTATACCTTGAGGCCCGCCCATCCTAGCAAGAGAGCAGGCGCCAAAAAAGGAGTTTTCTTCCACGTGCCATATCTTTTTAAGGATTGATATTCAGAAAAAATTGTCAACAGCAAAAATGAAGCTCTAGTCTTGCTTAGTGTACTCAGCAATTTTCAGCTAGATCCAAAGCTTTTGAGATACGATTTTCAGATTTTCAAAAAATTGTCAATTTTTCAAGTCATAGCAAGCACCAAAGTCAAAAAACTGGGTGAAAAATAATAAGCACCAAAAAATTAGACCCGACTGAATCGGCCCAAAAATTTCTTGCAAGCCGGACAAGTGTGAGTGACGTCACGCAGCTGGTCYAGGAAGAATGGGACACAACAGAAGCACCAAGGGATAATGAAAAGGAAGAGCCCGAGGAAGGCGAAAATGGCACAAATGATCCATGGAAGAATGCCGGAGACAAACTCAATGTGTGACACGATATGGTTCTGGAAATAGGGAGAAATTGGGATAGGGATAAGGTGGGAAAGGACTACAAATTACAAAAAAATTGGATAGAAACAAAGGTAAATAGATTTATAGTCGAAGTTTTTGATTTGCCTGAAAATCTAGCTCAACTTTATTGGATCTGTCTGAAAATCTCAGAGTCTGCTAAACAAATCTAGTGTTTTATTTTTGTAATCGACACTATTTTTTCTGAAAATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>504 279 166 51</canonical_bands>
                <polymorphic_bands>555 279 166</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCATAGCAAGCACCAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TATCGTGTCACACATTGAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GTCATAGCAAGCACCAAAGTCAAAAAACTGGGTGAAAAATAATAAGCACCAAAAAATTAGACCCGACTGAATCGGCCCAAAAATTTCTTGCAAGCCGGACAAGTGTGAGTGACGTCACGCAGCTGGTCCAGGAAGAATGGGACACAACAGAAGCACCAAGGGATAATGAAAAGGAAGAGCCCGAGGAAGGCGAAAATGGCACAAATGATCCATGGAAGAATGCCGGAGACAAACTCAATGTGTGACACGATA</canonical_amplicon>
		<polymorphic_amplicon>GTCATAGCAAGCACCAAAGTCAAAAAACTGGGTGAAAAATAATAAGCACCAAAAAATTAGACCCGACTGAATCGGCCCAAAAATTTCTTGCAAGCCGGACAAGTGTGAGTGACGTCACGCAGCTGGTCYAGGAAGAATGGGACACAACAGAAGCACCAAGGGATAATGAAAAGGAAGAGCCCGAGGAAGGCGAAAATGGCACAAATGATCCATGGAAGAATGCCGGAGACAAACTCAATGTGTGACACGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23867</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>765014</contig_pos>
        <strand>+</strand>
        <context>GGACTACAAA[C/T]TACAAAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGAAATAGGGAGAAATTGGGATAGGGATAAGGTGGGAAAGGACTACAAA</left_flank>
        <right_flank>TACAAAAAAATTGGATAGAAACAAAGGTAAATAGATTTATAGTCGAAGTT</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAAGAGAGCAGGCGCCAAAAAAGGAGTTTTCTTCCACGTGCCATATCTTTTTAAGGATTGATATTCAGAAAAAATTGTCAACAGCAAAAATGAAGCTCTAGTCTTGCTTAGTGTACTCAGCAATTTTCAGCTAGATCCAAAGCTTTTGAGATACGATTTTCAGATTTTCAAAAAATTGTCAATTTTTCAAGTCATAGCAAGCACCAAAGTCAAAAAACTGGGTGAAAAATAATAAGCACCAAAAAATTAGACCCGACTGAATCGGCCCAAAAATTTCTTGCAAGCCGGACAAGTGTGAGTGACGTCACGCAGCTGGTCCAGGAAGAATGGGACACAACAGAAGCACCAAGGGATAATGAAAAGGAAGAGCCCGAGGAAGGCGAAAATGGCACAAATGATCCATGGAAGAATGCCGGAGACAAACTCAATGTGTGACACGATATGGTTCTGGAAATAGGGAGAAATTGGGATAGGGATAAGGTGGGAAAGGACTACAAATTACAAAAAAATTGGATAGAAACAAAGGTAAATAGATTTATAGTCGAAGTTTTTGATTTGCCTGAAAATCTAGCTCAACTTTATTGGATCTGTCTGAAAATCTCAGAGTCTGCTAAACAAATCTAGTGTTTTATTTTTGTAATCGACACTATTTTTTCTGAAAATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGGCGCGCCCACCAACGCCCACCAGCGAGAGGGGTAGGCACTTCCAGGTGGCATATCTC</canonical>
            <polymorphic>GCAAGAGAGCAGGCGCCAAAAAAGGAGTTTTCTTCCACGTGCCATATCTTTTTAAGGATTGATATTCAGAAAAAATTGTCAACAGCAAAAATGAAGCTCTAGTCTTGCTTAGTGTACTCAGCAATTTTCAGCTAGATCCAAAGCTTTTGAGATACGATTTTCAGATTTTCAAAAAATTGTCAATTTTTCAAGTCATAGCAAGCACCAAAGTCAAAAAACTGGGTGAAAAATAATAAGCACCAAAAAATTAGACCCGACTGAATCGGCCCAAAAATTTCTTGCAAGCCGGACAAGTGTGAGTGACGTCACGCAGCTGGTCCAGGAAGAATGGGACACAACAGAAGCACCAAGGGATAATGAAAAGGAAGAGCCCGAGGAAGGCGAAAATGGCACAAATGATCCATGGAAGAATGCCGGAGACAAACTCAATGTGTGACACGATATGGTTCTGGAAATAGGGAGAAATTGGGATAGGGATAAGGTGGGAAAGGACTACAAAYTACAAAAAAATTGGATAGAAACAAAGGTAAATAGATTTATAGTCGAAGTTTTTGATTTGCCTGAAAATCTAGCTCAACTTTATTGGATCTGTCTGAAAATCTCAGAGTCTGCTAAACAAATCTAGTGTTTTATTTTTGTAATCGACACTATTTTTTCTGAAAATCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGGCGCGCCCACCAACGCCCACCAGCGAGAGGGGTAGGCACTTCCAGGTGGCATATCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>492 191 73 64 52 49 34 27 11 7</canonical_bands>
                <polymorphic_bands>492 191 73 64 52 49 45 27 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTCTGGAAATAGGGAGAA</pcr_primer_p1>
		<pcr_primer_p2>GGAATTTCAATTTCATCATCTTA</pcr_primer_p2>
		<pcr_amplicon_size>675</pcr_amplicon_size>
		<canonical_amplicon>GGTTCTGGAAATAGGGAGAAATTGGGATAGGGATAAGGTGGGAAAGGACTACAAATTACAAAAAAATTGGATAGAAAC</canonical_amplicon>
		<polymorphic_amplicon>GGTTCTGGAAATAGGGAGAAATTGGGATAGGGATAAGGTGGGAAAGGACTACAAAYTACAAAAAAATTGGATAGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23868</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>783233</contig_pos>
        <strand>+</strand>
        <context>GGGTCCTTTT[C/T]GATAAGTTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATACACCGGTTTTCATCAGTCCGGGTAGTTGCCGCCCTGTGGGTCCTTTT</left_flank>
        <right_flank>GATAAGTTAACTTTGTGTAGTTTTAGTTGTTTTGGACTTATTCTGAAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAGTTATGAAAGATACCAACAAGCCTAAAAGATACGGATCAAGCTGGAATATCAAAACATTATTACTCGTTTTGCTCGTCTTTAAAAATACATATAGACCTGAAGATGTACTTGAAAATAGACAAAACGAACCAGCGACGGACCAACGGCGGGTCAAAATTGGACGACTCATAACTTGGCTCATAGTCAAGATATTTAGGAGGTTGCGGTATTGAATTATAGACCCCAAAAAGCCTAAAAGATTGGGGTTCAGCTAGAATAGAAAAAAAACTGGTTTCGGGTTTTTTTAGGCAAGTTACTGTACTAGACGCCTATCCACATCTTCCTTGGTACCATTTAGATCTTTGGACAATCATAGTATTATCTAGACTTGATGAATTGCTTTGAATCAAACGCAAAGCTATATTTCTACCAATTTCCGTACTTCCAAGATGCGTACGTCTAAAGATACACCGGTTTTCATCAGTCCGGGTAGTTGCCGCCCTGTGGGTCCTTTTTGATAAGTTAACTTTGTGTAGTTTTAGTTGTTTTGGACTTATTCTGAAATCACATGATTTGTTTTGACTTCACTAGACATTTATCATTGTTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCAACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCAATAAATTATCGCTTGCCTCGGCTGGACCATACAAAT</canonical>
            <polymorphic>GGAAGTTATGAAAGATACCAACAAGCCTAAAAGATACGGATCAAGCTGGAATATCAAAACATTATTACTCGTTTTGCTCGTCTTTAAAAATACATATAGACCTGAAGATGTACTTGAAAATAGACAAAACGAACCAGCGACGGACCAACGGCGGGTCAAAATTGGACGACTCATAACTTGGCTCATAGTCAAGATATTTAGGAGGTTGCGGTATTGAATTATAGACCCCAAAAAGCCTAAAAGATTGGGGTTCAGCTAGAATAGAAAAAAAACTGGTTTCGGGTTTTTTTAGGCAAGTTACTGTACTAGACGCCTATCCACATCTTCCTTGGTACCATTTAGATCTTTGGACAATCATAGTATTATCTAGACTTGATGAATTGCTTTGAATCAAACGCAAAGCTATATTTCTACCAATTTCCGTACTTCCAAGATGCGTACGTCTAAAGATACACCGGTTTTCATCAGTCCGGGTAGTTGCCGCCCTGTGGGTCCTTTTYGATAAGTTAACTTTGTGTAGTTTTAGTTGTTTTGGACTTATTCTGAAATCACATGATTTGTTTTGACTTCACTAGACATTTATCATTGTTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCAACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCAATAAATTATCGCTTGCCTCGGCTGGACCATACAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTAGACGCCTATCCACATCT</pcr_primer_p1>
		<pcr_primer_p2>TCATGTGATTTCAGAATAAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TACTAGACGCCTATCCACATCTTCCTTGGTACCATTTAGATCTTTGGACAATCATAGTATTATCTAGACTTGATGAATTGCTTTGAATCAAACGCAAAGCTATATTTCTACCAATTTCCGTACTTCCAAGATGCGTACGTCTAAAGATACACCGGTTTTCATCAGTCCGGGTAGTTGCCGCCCTGTGGGTCCTTTTTGATAAGTTAACTTTGTGTAGTTTTAGTTGTTTTGGACTTATTCTGAAATCACATGA</canonical_amplicon>
		<polymorphic_amplicon>TACTAGACGCCTATCCACATCTTCCTTGGTACCATTTAGATCTTTGGACAATCATAGTATTATCTAGACTTGATGAATTGCTTTGAATCAAACGCAAAGCTATATTTCTACCAATTTCCGTACTTCCAAGATGCGTACGTCTAAAGATACACCGGTTTTCATCAGTCCGGGTAGTTGCCGCCCTGTGGGTCCTTTTYGATAAGTTAACTTTGTGTAGTTTTAGTTGTTTTGGACTTATTCTGAAATCACATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23869</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>783290</contig_pos>
        <strand>+</strand>
        <context>AATCACATGA[C/T]TTGTTTTGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAACTTTGTGTAGTTTTAGTTGTTTTGGACTTATTCTGAAATCACATGA</left_flank>
        <right_flank>TTGTTTTGACTTCACTAGACATTTATCATTGTTATCGCCAAAAGCCACCT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACATTATTACTCGTTTTGCTCGTCTTTAAAAATACATATAGACCTGAAGATGTACTTGAAAATAGACAAAACGAACCAGCGACGGACCAACGGCGGGTCAAAATTGGACGACTCATAACTTGGCTCATAGTCAAGATATTTAGGAGGTTGCGGTATTGAATTATAGACCCCAAAAAGCCTAAAAGATTGGGGTTCAGCTAGAATAGAAAAAAAACTGGTTTCGGGTTTTTTTAGGCAAGTTACTGTACTAGACGCCTATCCACATCTTCCTTGGTACCATTTAGATCTTTGGACAATCATAGTATTATCTAGACTTGATGAATTGCTTTGAATCAAACGCAAAGCTATATTTCTACCAATTTCCGTACTTCCAAGATGCGTACGTCTAAAGATACACCGGTTTTCATCAGTCCGGGTAGTTGCCGCCCTGTGGGTCCTTTTTGATAAGTTAACTTTGTGTAGTTTTAGTTGTTTTGGACTTATTCTGAAATCACATGATTTGTTTTGACTTCACTAGACATTTATCATTGTTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCAACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCAATAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCTTCTGCGGCATATAGATGAATGCAATAAAAAGAACACGCATAAT</canonical>
            <polymorphic>AACATTATTACTCGTTTTGCTCGTCTTTAAAAATACATATAGACCTGAAGATGTACTTGAAAATAGACAAAACGAACCAGCGACGGACCAACGGCGGGTCAAAATTGGACGACTCATAACTTGGCTCATAGTCAAGATATTTAGGAGGTTGCGGTATTGAATTATAGACCCCAAAAAGCCTAAAAGATTGGGGTTCAGCTAGAATAGAAAAAAAACTGGTTTCGGGTTTTTTTAGGCAAGTTACTGTACTAGACGCCTATCCACATCTTCCTTGGTACCATTTAGATCTTTGGACAATCATAGTATTATCTAGACTTGATGAATTGCTTTGAATCAAACGCAAAGCTATATTTCTACCAATTTCCGTACTTCCAAGATGCGTACGTCTAAAGATACACCGGTTTTCATCAGTCCGGGTAGTTGCCGCCCTGTGGGTCCTTTTTGATAAGTTAACTTTGTGTAGTTTTAGTTGTTTTGGACTTATTCTGAAATCACATGAYTTGTTTTGACTTCACTAGACATTTATCATTGTTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCAACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCAATAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCTTCTGCGGCATATAGATGAATGCAATAAAAAGAACACGCATAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCTTCCTTGGTACCATTTAG</pcr_primer_p1>
		<pcr_primer_p2>TTAGCACTTTTCCTGAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>302</pcr_amplicon_size>
		<canonical_amplicon>CATCTTCCTTGGTACCATTTAGATCTTTGGACAATCATAGTATTATCTAGACTTGATGAATTGCTTTGAATCAAACGCAAAGCTATATTTCTACCAATTTCCGTACTTCCAAGATGCGTACGTCTAAAGATACACCGGTTTTCATCAGTCCGGGTAGTTGCCGCCCTGTGGGTCCTTTTTGATAAGTTAACTTTGTGTAGTTTTAGTTGTTTTGGACTTATTCTGAAATCACATGATTTGTTTTGACTTCACTAGACATTTATCATTGTTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAA</canonical_amplicon>
		<polymorphic_amplicon>CATCTTCCTTGGTACCATTTAGATCTTTGGACAATCATAGTATTATCTAGACTTGATGAATTGCTTTGAATCAAACGCAAAGCTATATTTCTACCAATTTCCGTACTTCCAAGATGCGTACGTCTAAAGATACACCGGTTTTCATCAGTCCGGGTAGTTGCCGCCCTGTGGGTCCTTTTTGATAAGTTAACTTTGTGTAGTTTTAGTTGTTTTGGACTTATTCTGAAATCACATGAYTTGTTTTGACTTCACTAGACATTTATCATTGTTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23870</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>783321</contig_pos>
        <strand>+</strand>
        <context>ATTTATCATT[A/G]TTATCGCCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATTCTGAAATCACATGATTTGTTTTGACTTCACTAGACATTTATCATT</left_flank>
        <right_flank>TTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATACATATAGACCTGAAGATGTACTTGAAAATAGACAAAACGAACCAGCGACGGACCAACGGCGGGTCAAAATTGGACGACTCATAACTTGGCTCATAGTCAAGATATTTAGGAGGTTGCGGTATTGAATTATAGACCCCAAAAAGCCTAAAAGATTGGGGTTCAGCTAGAATAGAAAAAAAACTGGTTTCGGGTTTTTTTAGGCAAGTTACTGTACTAGACGCCTATCCACATCTTCCTTGGTACCATTTAGATCTTTGGACAATCATAGTATTATCTAGACTTGATGAATTGCTTTGAATCAAACGCAAAGCTATATTTCTACCAATTTCCGTACTTCCAAGATGCGTACGTCTAAAGATACACCGGTTTTCATCAGTCCGGGTAGTTGCCGCCCTGTGGGTCCTTTTTGATAAGTTAACTTTGTGTAGTTTTAGTTGTTTTGGACTTATTCTGAAATCACATGATTTGTTTTGACTTCACTAGACATTTATCATTGTTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCAACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCAATAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCTTCTGCGGCATATAGATGAATGCAATAAAAAGAACACGCATAATTGCTTATTTTTAATTGCTCATGGGAGAAAAG</canonical>
            <polymorphic>AATACATATAGACCTGAAGATGTACTTGAAAATAGACAAAACGAACCAGCGACGGACCAACGGCGGGTCAAAATTGGACGACTCATAACTTGGCTCATAGTCAAGATATTTAGGAGGTTGCGGTATTGAATTATAGACCCCAAAAAGCCTAAAAGATTGGGGTTCAGCTAGAATAGAAAAAAAACTGGTTTCGGGTTTTTTTAGGCAAGTTACTGTACTAGACGCCTATCCACATCTTCCTTGGTACCATTTAGATCTTTGGACAATCATAGTATTATCTAGACTTGATGAATTGCTTTGAATCAAACGCAAAGCTATATTTCTACCAATTTCCGTACTTCCAAGATGCGTACGTCTAAAGATACACCGGTTTTCATCAGTCCGGGTAGTTGCCGCCCTGTGGGTCCTTTTTGATAAGTTAACTTTGTGTAGTTTTAGTTGTTTTGGACTTATTCTGAAATCACATGATTTGTTTTGACTTCACTAGACATTTATCATTRTTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCAACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCAATAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCTTCTGCGGCATATAGATGAATGCAATAAAAAGAACACGCATAATTGCTTATTTTTAATTGCTCATGGGAGAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGGACTTATTCTGAAATCAC</pcr_primer_p1>
		<pcr_primer_p2>CCGATTCAACATTGATCTCT</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>TTTTGGACTTATTCTGAAATCACATGATTTGTTTTGACTTCACTAGACATTTATCATTGTTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGG</canonical_amplicon>
		<polymorphic_amplicon>TTTTGGACTTATTCTGAAATCACATGATTTGTTTTGACTTCACTAGACATTTATCATTRTTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23871</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>783375</contig_pos>
        <strand>+</strand>
        <context>GTAGTCCTAG[C/T]CGAAAACAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGCCAAAAGCCACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAG</left_flank>
        <right_flank>CGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACCAACGGCGGGTCAAAATTGGACGACTCATAACTTGGCTCATAGTCAAGATATTTAGGAGGTTGCGGTATTGAATTATAGACCCCAAAAAGCCTAAAAGATTGGGGTTCAGCTAGAATAGAAAAAAAACTGGTTTCGGGTTTTTTTAGGCAAGTTACTGTACTAGACGCCTATCCACATCTTCCTTGGTACCATTTAGATCTTTGGACAATCATAGTATTATCTAGACTTGATGAATTGCTTTGAATCAAACGCAAAGCTATATTTCTACCAATTTCCGTACTTCCAAGATGCGTACGTCTAAAGATACACCGGTTTTCATCAGTCCGGGTAGTTGCCGCCCTGTGGGTCCTTTTTGATAAGTTAACTTTGTGTAGTTTTAGTTGTTTTGGACTTATTCTGAAATCACATGATTTGTTTTGACTTCACTAGACATTTATCATTGTTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCAACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCAATAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCTTCTGCGGCATATAGATGAATGCAATAAAAAGAACACGCATAATTGCTTATTTTTAATTGCTCATGGGAGAAAAGAGAGTCAAAACAGGATTATAGGAAGGTGGCACCTGTACAGTGTTCAAATTTGCT</canonical>
            <polymorphic>GACCAACGGCGGGTCAAAATTGGACGACTCATAACTTGGCTCATAGTCAAGATATTTAGGAGGTTGCGGTATTGAATTATAGACCCCAAAAAGCCTAAAAGATTGGGGTTCAGCTAGAATAGAAAAAAAACTGGTTTCGGGTTTTTTTAGGCAAGTTACTGTACTAGACGCCTATCCACATCTTCCTTGGTACCATTTAGATCTTTGGACAATCATAGTATTATCTAGACTTGATGAATTGCTTTGAATCAAACGCAAAGCTATATTTCTACCAATTTCCGTACTTCCAAGATGCGTACGTCTAAAGATACACCGGTTTTCATCAGTCCGGGTAGTTGCCGCCCTGTGGGTCCTTTTTGATAAGTTAACTTTGTGTAGTTTTAGTTGTTTTGGACTTATTCTGAAATCACATGATTTGTTTTGACTTCACTAGACATTTATCATTGTTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGYCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCAACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCAATAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCTTCTGCGGCATATAGATGAATGCAATAAAAAGAACACGCATAATTGCTTATTTTTAATTGCTCATGGGAGAAAAGAGAGTCAAAACAGGATTATAGGAAGGTGGCACCTGTACAGTGTTCAAATTTGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 201 182 104 12</canonical_bands>
                <polymorphic_bands>513 201 182 104</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTTTTGACTTCACTAGACATTT</pcr_primer_p1>
		<pcr_primer_p2>CCGATTCAACATTGATCTCT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>TTGTTTTGACTTCACTAGACATTTATCATTGTTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGG</canonical_amplicon>
		<polymorphic_amplicon>TTGTTTTGACTTCACTAGACATTTATCATTGTTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGYCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23872</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>783441</contig_pos>
        <strand>+</strand>
        <context>CTCCGAACAA[A/C]GCACACTATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAA</left_flank>
        <right_flank>GCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGTATTGAATTATAGACCCCAAAAAGCCTAAAAGATTGGGGTTCAGCTAGAATAGAAAAAAAACTGGTTTCGGGTTTTTTTAGGCAAGTTACTGTACTAGACGCCTATCCACATCTTCCTTGGTACCATTTAGATCTTTGGACAATCATAGTATTATCTAGACTTGATGAATTGCTTTGAATCAAACGCAAAGCTATATTTCTACCAATTTCCGTACTTCCAAGATGCGTACGTCTAAAGATACACCGGTTTTCATCAGTCCGGGTAGTTGCCGCCCTGTGGGTCCTTTTTGATAAGTTAACTTTGTGTAGTTTTAGTTGTTTTGGACTTATTCTGAAATCACATGATTTGTTTTGACTTCACTAGACATTTATCATTGTTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCAACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCAATAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCTTCTGCGGCATATAGATGAATGCAATAAAAAGAACACGCATAATTGCTTATTTTTAATTGCTCATGGGAGAAAAGAGAGTCAAAACAGGATTATAGGAAGGTGGCACCTGTACAGTGTTCAAATTTGCTGTGTAGCTCAGTCGTTTATTCAAGGCCCGGACATTGGGATATTCAGAAAACTGAATAAATGCCATT</canonical>
            <polymorphic>CGGTATTGAATTATAGACCCCAAAAAGCCTAAAAGATTGGGGTTCAGCTAGAATAGAAAAAAAACTGGTTTCGGGTTTTTTTAGGCAAGTTACTGTACTAGACGCCTATCCACATCTTCCTTGGTACCATTTAGATCTTTGGACAATCATAGTATTATCTAGACTTGATGAATTGCTTTGAATCAAACGCAAAGCTATATTTCTACCAATTTCCGTACTTCCAAGATGCGTACGTCTAAAGATACACCGGTTTTCATCAGTCCGGGTAGTTGCCGCCCTGTGGGTCCTTTTTGATAAGTTAACTTTGTGTAGTTTTAGTTGTTTTGGACTTATTCTGAAATCACATGATTTGTTTTGACTTCACTAGACATTTATCATTGTTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAMGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCAACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCAATAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCTTCTGCGGCATATAGATGAATGCAATAAAAAGAACACGCATAATTGCTTATTTTTAATTGCTCATGGGAGAAAAGAGAGTCAAAACAGGATTATAGGAAGGTGGCACCTGTACAGTGTTCAAATTTGCTGTGTAGCTCAGTCGTTTATTCAAGGCCCGGACATTGGGATATTCAGAAAACTGAATAAATGCCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCTCAGGAAAAGTGCTAAT</pcr_primer_p1>
		<pcr_primer_p2>GATCTGAAATCGATATCTGTAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATC</canonical_amplicon>
		<polymorphic_amplicon>CACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAMGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23873</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>783459</contig_pos>
        <strand>+</strand>
        <context>ATTTCATTGT[A/G]ATTCATCTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGT</left_flank>
        <right_flank>ATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCAAAAAGCCTAAAAGATTGGGGTTCAGCTAGAATAGAAAAAAAACTGGTTTCGGGTTTTTTTAGGCAAGTTACTGTACTAGACGCCTATCCACATCTTCCTTGGTACCATTTAGATCTTTGGACAATCATAGTATTATCTAGACTTGATGAATTGCTTTGAATCAAACGCAAAGCTATATTTCTACCAATTTCCGTACTTCCAAGATGCGTACGTCTAAAGATACACCGGTTTTCATCAGTCCGGGTAGTTGCCGCCCTGTGGGTCCTTTTTGATAAGTTAACTTTGTGTAGTTTTAGTTGTTTTGGACTTATTCTGAAATCACATGATTTGTTTTGACTTCACTAGACATTTATCATTGTTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCAACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCAATAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCTTCTGCGGCATATAGATGAATGCAATAAAAAGAACACGCATAATTGCTTATTTTTAATTGCTCATGGGAGAAAAGAGAGTCAAAACAGGATTATAGGAAGGTGGCACCTGTACAGTGTTCAAATTTGCTGTGTAGCTCAGTCGTTTATTCAAGGCCCGGACATTGGGATATTCAGAAAACTGAATAAATGCCATTTATATTACAAAGCCTTGT</canonical>
            <polymorphic>CCCAAAAAGCCTAAAAGATTGGGGTTCAGCTAGAATAGAAAAAAAACTGGTTTCGGGTTTTTTTAGGCAAGTTACTGTACTAGACGCCTATCCACATCTTCCTTGGTACCATTTAGATCTTTGGACAATCATAGTATTATCTAGACTTGATGAATTGCTTTGAATCAAACGCAAAGCTATATTTCTACCAATTTCCGTACTTCCAAGATGCGTACGTCTAAAGATACACCGGTTTTCATCAGTCCGGGTAGTTGCCGCCCTGTGGGTCCTTTTTGATAAGTTAACTTTGTGTAGTTTTAGTTGTTTTGGACTTATTCTGAAATCACATGATTTGTTTTGACTTCACTAGACATTTATCATTGTTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTRATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCAACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCAATAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCTTCTGCGGCATATAGATGAATGCAATAAAAAGAACACGCATAATTGCTTATTTTTAATTGCTCATGGGAGAAAAGAGAGTCAAAACAGGATTATAGGAAGGTGGCACCTGTACAGTGTTCAAATTTGCTGTGTAGCTCAGTCGTTTATTCAAGGCCCGGACATTGGGATATTCAGAAAACTGAATAAATGCCATTTATATTACAAAGCCTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>255 152 123 96 92 87 66 55 37 23 14</canonical_bands>
                <polymorphic_bands>255 152 151 123 92 87 66 37 23 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACCTCAGGAAAAGTGCTAAT</pcr_primer_p1>
		<pcr_primer_p2>GATCTGAAATCGATATCTGTAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATC</canonical_amplicon>
		<polymorphic_amplicon>CACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTRATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23874</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>783479</contig_pos>
        <strand>+</strand>
        <context>CTTCTAGAAG[A/G]ATCTTTAGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAG</left_flank>
        <right_flank>ATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGGTTCAGCTAGAATAGAAAAAAAACTGGTTTCGGGTTTTTTTAGGCAAGTTACTGTACTAGACGCCTATCCACATCTTCCTTGGTACCATTTAGATCTTTGGACAATCATAGTATTATCTAGACTTGATGAATTGCTTTGAATCAAACGCAAAGCTATATTTCTACCAATTTCCGTACTTCCAAGATGCGTACGTCTAAAGATACACCGGTTTTCATCAGTCCGGGTAGTTGCCGCCCTGTGGGTCCTTTTTGATAAGTTAACTTTGTGTAGTTTTAGTTGTTTTGGACTTATTCTGAAATCACATGATTTGTTTTGACTTCACTAGACATTTATCATTGTTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCAACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCAATAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCTTCTGCGGCATATAGATGAATGCAATAAAAAGAACACGCATAATTGCTTATTTTTAATTGCTCATGGGAGAAAAGAGAGTCAAAACAGGATTATAGGAAGGTGGCACCTGTACAGTGTTCAAATTTGCTGTGTAGCTCAGTCGTTTATTCAAGGCCCGGACATTGGGATATTCAGAAAACTGAATAAATGCCATTTATATTACAAAGCCTTGTAAAAACAGATTTCAAAAGAA</canonical>
            <polymorphic>GGGGTTCAGCTAGAATAGAAAAAAAACTGGTTTCGGGTTTTTTTAGGCAAGTTACTGTACTAGACGCCTATCCACATCTTCCTTGGTACCATTTAGATCTTTGGACAATCATAGTATTATCTAGACTTGATGAATTGCTTTGAATCAAACGCAAAGCTATATTTCTACCAATTTCCGTACTTCCAAGATGCGTACGTCTAAAGATACACCGGTTTTCATCAGTCCGGGTAGTTGCCGCCCTGTGGGTCCTTTTTGATAAGTTAACTTTGTGTAGTTTTAGTTGTTTTGGACTTATTCTGAAATCACATGATTTGTTTTGACTTCACTAGACATTTATCATTGTTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGRATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCAACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCAATAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCTTCTGCGGCATATAGATGAATGCAATAAAAAGAACACGCATAATTGCTTATTTTTAATTGCTCATGGGAGAAAAGAGAGTCAAAACAGGATTATAGGAAGGTGGCACCTGTACAGTGTTCAAATTTGCTGTGTAGCTCAGTCGTTTATTCAAGGCCCGGACATTGGGATATTCAGAAAACTGAATAAATGCCATTTATATTACAAAGCCTTGTAAAAACAGATTTCAAAAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>357 286 156 142 43 16</canonical_bands>
                <polymorphic_bands>400 286 156 142 16</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>442 357 142 43 16</canonical_bands>
                <polymorphic_bands>442 400 142 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACCTCAGGAAAAGTGCTAAT</pcr_primer_p1>
		<pcr_primer_p2>GATCTGAAATCGATATCTGTAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATC</canonical_amplicon>
		<polymorphic_amplicon>CACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGRATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23875</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>783531</contig_pos>
        <strand>+</strand>
        <context>GAATCGGAAA[A/G]WTCTGGAATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAA</left_flank>
        <right_flank>ATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTGTACTAGACGCCTATCCACATCTTCCTTGGTACCATTTAGATCTTTGGACAATCATAGTATTATCTAGACTTGATGAATTGCTTTGAATCAAACGCAAAGCTATATTTCTACCAATTTCCGTACTTCCAAGATGCGTACGTCTAAAGATACACCGGTTTTCATCAGTCCGGGTAGTTGCCGCCCTGTGGGTCCTTTTTGATAAGTTAACTTTGTGTAGTTTTAGTTGTTTTGGACTTATTCTGAAATCACATGATTTGTTTTGACTTCACTAGACATTTATCATTGTTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCAACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCAATAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCTTCTGCGGCATATAGATGAATGCAATAAAAAGAACACGCATAATTGCTTATTTTTAATTGCTCATGGGAGAAAAGAGAGTCAAAACAGGATTATAGGAAGGTGGCACCTGTACAGTGTTCAAATTTGCTGTGTAGCTCAGTCGTTTATTCAAGGCCCGGACATTGGGATATTCAGAAAACTGAATAAATGCCATTTATATTACAAAGCCTTGTAAAAACAGATTTCAAAAGAAAAATGAATTGGGACAGATGGAATTGCATCCTGCCTTTGAGTCTTCGGACCCT</canonical>
            <polymorphic>TACTGTACTAGACGCCTATCCACATCTTCCTTGGTACCATTTAGATCTTTGGACAATCATAGTATTATCTAGACTTGATGAATTGCTTTGAATCAAACGCAAAGCTATATTTCTACCAATTTCCGTACTTCCAAGATGCGTACGTCTAAAGATACACCGGTTTTCATCAGTCCGGGTAGTTGCCGCCCTGTGGGTCCTTTTTGATAAGTTAACTTTGTGTAGTTTTAGTTGTTTTGGACTTATTCTGAAATCACATGATTTGTTTTGACTTCACTAGACATTTATCATTGTTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAARATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCAACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCAATAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCTTCTGCGGCATATAGATGAATGCAATAAAAAGAACACGCATAATTGCTTATTTTTAATTGCTCATGGGAGAAAAGAGAGTCAAAACAGGATTATAGGAAGGTGGCACCTGTACAGTGTTCAAATTTGCTGTGTAGCTCAGTCGTTTATTCAAGGCCCGGACATTGGGATATTCAGAAAACTGAATAAATGCCATTTATATTACAAAGCCTTGTAAAAACAGATTTCAAAAGAAAAATGAATTGGGACAGATGGAATTGCATCCTGCCTTTGAGTCTTCGGACCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>436 400 54 47 43 20</canonical_bands>
                <polymorphic_bands>436 400 67 54 43</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>501 456 43</canonical_bands>
                <polymorphic_bands>957 43</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>501 456 43</canonical_bands>
                <polymorphic_bands>957 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTCAGGAAAAGTGCTAATG</pcr_primer_p1>
		<pcr_primer_p2>GACGCTTTATTATTGATCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>CCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTC</canonical_amplicon>
		<polymorphic_amplicon>CCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAARATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23876</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>783532</contig_pos>
        <strand>+</strand>
        <context>AATCGGAAAR[A/T]TCTGGAATCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAG</left_flank>
        <right_flank>TCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTGTACTAGACGCCTATCCACATCTTCCTTGGTACCATTTAGATCTTTGGACAATCATAGTATTATCTAGACTTGATGAATTGCTTTGAATCAAACGCAAAGCTATATTTCTACCAATTTCCGTACTTCCAAGATGCGTACGTCTAAAGATACACCGGTTTTCATCAGTCCGGGTAGTTGCCGCCCTGTGGGTCCTTTTTGATAAGTTAACTTTGTGTAGTTTTAGTTGTTTTGGACTTATTCTGAAATCACATGATTTGTTTTGACTTCACTAGACATTTATCATTGTTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCAACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCAATAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCTTCTGCGGCATATAGATGAATGCAATAAAAAGAACACGCATAATTGCTTATTTTTAATTGCTCATGGGAGAAAAGAGAGTCAAAACAGGATTATAGGAAGGTGGCACCTGTACAGTGTTCAAATTTGCTGTGTAGCTCAGTCGTTTATTCAAGGCCCGGACATTGGGATATTCAGAAAACTGAATAAATGCCATTTATATTACAAAGCCTTGTAAAAACAGATTTCAAAAGAAAAATGAATTGGGACAGATGGAATTGCATCCTGCCTTTGAGTCTTCGGACCCTC</canonical>
            <polymorphic>ACTGTACTAGACGCCTATCCACATCTTCCTTGGTACCATTTAGATCTTTGGACAATCATAGTATTATCTAGACTTGATGAATTGCTTTGAATCAAACGCAAAGCTATATTTCTACCAATTTCCGTACTTCCAAGATGCGTACGTCTAAAGATACACCGGTTTTCATCAGTCCGGGTAGTTGCCGCCCTGTGGGTCCTTTTTGATAAGTTAACTTTGTGTAGTTTTAGTTGTTTTGGACTTATTCTGAAATCACATGATTTGTTTTGACTTCACTAGACATTTATCATTGTTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGWTCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCAACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCAATAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCTTCTGCGGCATATAGATGAATGCAATAAAAAGAACACGCATAATTGCTTATTTTTAATTGCTCATGGGAGAAAAGAGAGTCAAAACAGGATTATAGGAAGGTGGCACCTGTACAGTGTTCAAATTTGCTGTGTAGCTCAGTCGTTTATTCAAGGCCCGGACATTGGGATATTCAGAAAACTGAATAAATGCCATTTATATTACAAAGCCTTGTAAAAACAGATTTCAAAAGAAAAATGAATTGGGACAGATGGAATTGCATCCTGCCTTTGAGTCTTCGGACCCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>436 401 54 47 42 20</canonical_bands>
                <polymorphic_bands>436 401 67 54 42</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>502 456 42</canonical_bands>
                <polymorphic_bands>958 42</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>502 456 42</canonical_bands>
                <polymorphic_bands>958 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTCAGGAAAAGTGCTAATG</pcr_primer_p1>
		<pcr_primer_p2>GACGCTTTATTATTGATCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>CCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTC</canonical_amplicon>
		<polymorphic_amplicon>CCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGWTCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23877</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>783547</contig_pos>
        <strand>+</strand>
        <context>GAATCATCAA[C/G]GGATAGGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAA</left_flank>
        <right_flank>GGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCCACATCTTCCTTGGTACCATTTAGATCTTTGGACAATCATAGTATTATCTAGACTTGATGAATTGCTTTGAATCAAACGCAAAGCTATATTTCTACCAATTTCCGTACTTCCAAGATGCGTACGTCTAAAGATACACCGGTTTTCATCAGTCCGGGTAGTTGCCGCCCTGTGGGTCCTTTTTGATAAGTTAACTTTGTGTAGTTTTAGTTGTTTTGGACTTATTCTGAAATCACATGATTTGTTTTGACTTCACTAGACATTTATCATTGTTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCAACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCAATAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCTTCTGCGGCATATAGATGAATGCAATAAAAAGAACACGCATAATTGCTTATTTTTAATTGCTCATGGGAGAAAAGAGAGTCAAAACAGGATTATAGGAAGGTGGCACCTGTACAGTGTTCAAATTTGCTGTGTAGCTCAGTCGTTTATTCAAGGCCCGGACATTGGGATATTCAGAAAACTGAATAAATGCCATTTATATTACAAAGCCTTGTAAAAACAGATTTCAAAAGAAAAATGAATTGGGACAGATGGAATTGCATCCTGCCTTTGAGTCTTCGGACCCTCCTTGCCTCACTGTTC</canonical>
            <polymorphic>TATCCACATCTTCCTTGGTACCATTTAGATCTTTGGACAATCATAGTATTATCTAGACTTGATGAATTGCTTTGAATCAAACGCAAAGCTATATTTCTACCAATTTCCGTACTTCCAAGATGCGTACGTCTAAAGATACACCGGTTTTCATCAGTCCGGGTAGTTGCCGCCCTGTGGGTCCTTTTTGATAAGTTAACTTTGTGTAGTTTTAGTTGTTTTGGACTTATTCTGAAATCACATGATTTGTTTTGACTTCACTAGACATTTATCATTGTTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAASGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCAACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCAATAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCTTCTGCGGCATATAGATGAATGCAATAAAAAGAACACGCATAATTGCTTATTTTTAATTGCTCATGGGAGAAAAGAGAGTCAAAACAGGATTATAGGAAGGTGGCACCTGTACAGTGTTCAAATTTGCTGTGTAGCTCAGTCGTTTATTCAAGGCCCGGACATTGGGATATTCAGAAAACTGAATAAATGCCATTTATATTACAAAGCCTTGTAAAAACAGATTTCAAAAGAAAAATGAATTGGGACAGATGGAATTGCATCCTGCCTTTGAGTCTTCGGACCCTCCTTGCCTCACTGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAGCATTCAGAGATCAAT</pcr_primer_p1>
		<pcr_primer_p2>AGGAAGATTAAACGATTTGTATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCAACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCAATAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCT</canonical_amplicon>
		<polymorphic_amplicon>TGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAASGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCAACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCAATAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23878</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>783628</contig_pos>
        <strand>+</strand>
        <context>TGTGTAGGTC[A/G]WCTGATCCGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTC</left_flank>
        <right_flank>ACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCAAAGCTATATTTCTACCAATTTCCGTACTTCCAAGATGCGTACGTCTAAAGATACACCGGTTTTCATCAGTCCGGGTAGTTGCCGCCCTGTGGGTCCTTTTTGATAAGTTAACTTTGTGTAGTTTTAGTTGTTTTGGACTTATTCTGAAATCACATGATTTGTTTTGACTTCACTAGACATTTATCATTGTTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCAACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCAATAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCTTCTGCGGCATATAGATGAATGCAATAAAAAGAACACGCATAATTGCTTATTTTTAATTGCTCATGGGAGAAAAGAGAGTCAAAACAGGATTATAGGAAGGTGGCACCTGTACAGTGTTCAAATTTGCTGTGTAGCTCAGTCGTTTATTCAAGGCCCGGACATTGGGATATTCAGAAAACTGAATAAATGCCATTTATATTACAAAGCCTTGTAAAAACAGATTTCAAAAGAAAAATGAATTGGGACAGATGGAATTGCATCCTGCCTTTGAGTCTTCGGACCCTCCTTGCCTCACTGTTCCAAGATGCGCACGTCTAAAGATATATCCGTTTTTATCAGTCCGGGTAGTTGCCACCCTGTGGGTCCTTTTCGATAAGTTAA</canonical>
            <polymorphic>CGCAAAGCTATATTTCTACCAATTTCCGTACTTCCAAGATGCGTACGTCTAAAGATACACCGGTTTTCATCAGTCCGGGTAGTTGCCGCCCTGTGGGTCCTTTTTGATAAGTTAACTTTGTGTAGTTTTAGTTGTTTTGGACTTATTCTGAAATCACATGATTTGTTTTGACTTCACTAGACATTTATCATTGTTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCRACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCAATAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCTTCTGCGGCATATAGATGAATGCAATAAAAAGAACACGCATAATTGCTTATTTTTAATTGCTCATGGGAGAAAAGAGAGTCAAAACAGGATTATAGGAAGGTGGCACCTGTACAGTGTTCAAATTTGCTGTGTAGCTCAGTCGTTTATTCAAGGCCCGGACATTGGGATATTCAGAAAACTGAATAAATGCCATTTATATTACAAAGCCTTGTAAAAACAGATTTCAAAAGAAAAATGAATTGGGACAGATGGAATTGCATCCTGCCTTTGAGTCTTCGGACCCTCCTTGCCTCACTGTTCCAAGATGCGCACGTCTAAAGATATATCCGTTTTTATCAGTCCGGGTAGTTGCCACCCTGTGGGTCCTTTTCGATAAGTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>501 386 113</canonical_bands>
                <polymorphic_bands>887 113</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGAGCATTCAGAGATCAAT</pcr_primer_p1>
		<pcr_primer_p2>AGGAAGATTAAACGATTTGTATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCAACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCAATAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCT</canonical_amplicon>
		<polymorphic_amplicon>TGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCRACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCAATAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23879</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>783629</contig_pos>
        <strand>+</strand>
        <context>GTGTAGGTCR[A/T]CTGATCCGCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCA</left_flank>
        <right_flank>CTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAAAGCTATATTTCTACCAATTTCCGTACTTCCAAGATGCGTACGTCTAAAGATACACCGGTTTTCATCAGTCCGGGTAGTTGCCGCCCTGTGGGTCCTTTTTGATAAGTTAACTTTGTGTAGTTTTAGTTGTTTTGGACTTATTCTGAAATCACATGATTTGTTTTGACTTCACTAGACATTTATCATTGTTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCAACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCAATAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCTTCTGCGGCATATAGATGAATGCAATAAAAAGAACACGCATAATTGCTTATTTTTAATTGCTCATGGGAGAAAAGAGAGTCAAAACAGGATTATAGGAAGGTGGCACCTGTACAGTGTTCAAATTTGCTGTGTAGCTCAGTCGTTTATTCAAGGCCCGGACATTGGGATATTCAGAAAACTGAATAAATGCCATTTATATTACAAAGCCTTGTAAAAACAGATTTCAAAAGAAAAATGAATTGGGACAGATGGAATTGCATCCTGCCTTTGAGTCTTCGGACCCTCCTTGCCTCACTGTTCCAAGATGCGCACGTCTAAAGATATATCCGTTTTTATCAGTCCGGGTAGTTGCCACCCTGTGGGTCCTTTTCGATAAGTTAAC</canonical>
            <polymorphic>GCAAAGCTATATTTCTACCAATTTCCGTACTTCCAAGATGCGTACGTCTAAAGATACACCGGTTTTCATCAGTCCGGGTAGTTGCCGCCCTGTGGGTCCTTTTTGATAAGTTAACTTTGTGTAGTTTTAGTTGTTTTGGACTTATTCTGAAATCACATGATTTGTTTTGACTTCACTAGACATTTATCATTGTTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCAWCTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCAATAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCTTCTGCGGCATATAGATGAATGCAATAAAAAGAACACGCATAATTGCTTATTTTTAATTGCTCATGGGAGAAAAGAGAGTCAAAACAGGATTATAGGAAGGTGGCACCTGTACAGTGTTCAAATTTGCTGTGTAGCTCAGTCGTTTATTCAAGGCCCGGACATTGGGATATTCAGAAAACTGAATAAATGCCATTTATATTACAAAGCCTTGTAAAAACAGATTTCAAAAGAAAAATGAATTGGGACAGATGGAATTGCATCCTGCCTTTGAGTCTTCGGACCCTCCTTGCCTCACTGTTCCAAGATGCGCACGTCTAAAGATATATCCGTTTTTATCAGTCCGGGTAGTTGCCACCCTGTGGGTCCTTTTCGATAAGTTAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>499 386 112 3</canonical_bands>
                <polymorphic_bands>885 112 3</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>474 386 112 25 3</canonical_bands>
                <polymorphic_bands>474 411 112 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGAGCATTCAGAGATCAAT</pcr_primer_p1>
		<pcr_primer_p2>AGGAAGATTAAACGATTTGTATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCAACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCAATAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCT</canonical_amplicon>
		<polymorphic_amplicon>TGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCAWCTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCAATAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23880</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>783698</contig_pos>
        <strand>+</strand>
        <context>GTGGGCTTCA[A/G]TAAATTATCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCA</left_flank>
        <right_flank>TAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTCCGGGTAGTTGCCGCCCTGTGGGTCCTTTTTGATAAGTTAACTTTGTGTAGTTTTAGTTGTTTTGGACTTATTCTGAAATCACATGATTTGTTTTGACTTCACTAGACATTTATCATTGTTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCAACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCAATAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCTTCTGCGGCATATAGATGAATGCAATAAAAAGAACACGCATAATTGCTTATTTTTAATTGCTCATGGGAGAAAAGAGAGTCAAAACAGGATTATAGGAAGGTGGCACCTGTACAGTGTTCAAATTTGCTGTGTAGCTCAGTCGTTTATTCAAGGCCCGGACATTGGGATATTCAGAAAACTGAATAAATGCCATTTATATTACAAAGCCTTGTAAAAACAGATTTCAAAAGAAAAATGAATTGGGACAGATGGAATTGCATCCTGCCTTTGAGTCTTCGGACCCTCCTTGCCTCACTGTTCCAAGATGCGCACGTCTAAAGATATATCCGTTTTTATCAGTCCGGGTAGTTGCCACCCTGTGGGTCCTTTTCGATAAGTTAACTTTGTGTTGTTTGATTGTTTCGATGCTAGATATGACTTCTTCGCAAATCGATTTGATTTCTCCAGACAT</canonical>
            <polymorphic>CAGTCCGGGTAGTTGCCGCCCTGTGGGTCCTTTTTGATAAGTTAACTTTGTGTAGTTTTAGTTGTTTTGGACTTATTCTGAAATCACATGATTTGTTTTGACTTCACTAGACATTTATCATTGTTATCGCCAAAAGCCACCTCAGGAAAAGTGCTAATGAGCTACAGTAGTCCTAGTCGAAAACAATCTCGAAGCTTCTATAGGAAATTCGCACGTCAATGGGAATAGCGCTCTCCGAACAAAGCACACTATTTCATTGTAATTCATCTTCTTCTAGAAGAATCTTTAGGAACCTCACGTGGAGCATTCAGAGATCAATGTTGAATCGGAAAGATCTGGAATCATCAAGGGATAGGAATTCTTACAGATATCGATTTCAGATCAATAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCAACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCARTAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCTTCTGCGGCATATAGATGAATGCAATAAAAAGAACACGCATAATTGCTTATTTTTAATTGCTCATGGGAGAAAAGAGAGTCAAAACAGGATTATAGGAAGGTGGCACCTGTACAGTGTTCAAATTTGCTGTGTAGCTCAGTCGTTTATTCAAGGCCCGGACATTGGGATATTCAGAAAACTGAATAAATGCCATTTATATTACAAAGCCTTGTAAAAACAGATTTCAAAAGAAAAATGAATTGGGACAGATGGAATTGCATCCTGCCTTTGAGTCTTCGGACCCTCCTTGCCTCACTGTTCCAAGATGCGCACGTCTAAAGATATATCCGTTTTTATCAGTCCGGGTAGTTGCCACCCTGTGGGTCCTTTTCGATAAGTTAACTTTGTGTTGTTTGATTGTTTCGATGCTAGATATGACTTCTTCGCAAATCGATTTGATTTCTCCAGACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATAAAGCGTCAGAGGATGTAG</pcr_primer_p1>
		<pcr_primer_p2>CTGTTTTGACTCTCTTTTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCAACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCAATAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCTTCTGCGGCATATAGATGAATGCAATAAAAAGAACACGCATAATTGCTTATTTTTAATTGCTCATGGGAGAAAAGAGAGTCAAAACAG</canonical_amplicon>
		<polymorphic_amplicon>TAATAAAGCGTCAGAGGATGTAGGGTTATGTGGCTGTGTAGGTCAACTGATCCGCGTGGTGTCACTGTGCACACGGTGTTGGTTCAATCTCGAAAATTAGACTTGTGGGCTTCARTAAATTATCGCTTGCCTCGGCTGGACCATACAAATCGTTTAATCTTCCTTCTGCGGCATATAGATGAATGCAATAAAAAGAACACGCATAATTGCTTATTTTTAATTGCTCATGGGAGAAAAGAGAGTCAAAACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23881</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>893045</contig_pos>
        <strand></strand>
        <context>GCCTGCAGGG[G/T]ACGGTACCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTATTGAATAATTAATAAATTACATCCCTCTGTCCTAATGCCTGCAGGG</left_flank>
        <right_flank>ACGGTACCTCCCTTCTATTTGCTAAGTGCCTTTTCCACATGACGTAATCA</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAATAGAACGGAGACGATCCAGAAGGCAGTGAACAATTGAGCCGCGCCTTCAAATAGCTGGTCCATCGCTCGTTGGCCGGACGGGCGCCCCCTTTATCGTTCTTGCACACCCTGGCGACACGGGCATAGATCTGAAAGGGTCTCAATTGGTGGTTAGAGGGTCTCCGAGGGTCACTAGGTGCTTACCTGTGACTCCTCATTATTATCGATTGCCTCGCTGGCGATCTCTCGGAACCAAAAGTAGACGTGCTCTTTGTAGGCAAAGGTGGCGACGAAGTTGGGAGCTGAAATTGTAGACATTGTCAGAAAATTCAGAAAATTTTTTTTTAATCGGAAGGTCCCATACCGTAATCTAAAAAAATATTTCGAATTTTTTGAATTTTCCGAATTTTTTTCTTGACTAAAAATCTCTGAAAATCGAGATAATGAATCGAAAAAAAAAATAAAATTATTGAATAATTAATAAATTACATCCCTCTGTCCTAATGCCTGCAGGGGACGGTACCTCCCTTCTATTTGCTAAGTGCCTTTTCCACATGACGTAATCACTAATTACCCGCAATCAGTCTTCAATCACTTACCATTCAACACTCTCGCATCGTAACTTTGCGTTCGAATGTTCGCTGACGCTTTTGTTGCCGGTGTTTCGTCGATTGTCTTCCTGTAATTAGTTAATGGGGGTACTGTACTTGAGAATTTTGGTGGAGAGAATGCAAATTCATTAAAATGTATTTACTAATTGAGGTGCAAAGTACATAGGCAGTTTGAAAAAAAATTCCAGAAAAAATTTTTTTTTGAAATTTTTTTTCCCTAAAATTCAAAATTGCTCAATTTCGATAAAAATCGATACCACGAGCTGAAATGAGCTAAAAAATAAGAATACTCAAAAAAAAAAATTTCAAAAAAGTCGAAAATTGAGAAAAAATTTTTTTCGAAAAATCCCAAAAAAAAATTTTTCTCAATTTTCGACTTTTTTGAATTTTTTTTTCGGTATTCTC</canonical>
            <polymorphic>TAAAATAGAACGGAGACGATCCAGAAGGCAGTGAACAATTGAGCCGCGCCTTCAAATAGCTGGTCCATCGCTCGTTGGCCGGACGGGCGCCCCCTTTATCGTTCTTGCACACCCTGGCGACACGGGCATAGATCTGAAAGGGTCTCAATTGGTGGTTAGAGGGTCTCCGAGGGTCACTAGGTGCTTACCTGTGACTCCTCATTATTATCGATTGCCTCGCTGGCGATCTCTCGGAACCAAAAGTAGACGTGCTCTTTGTAGGCAAAGGTGGCGACGAAGTTGGGAGCTGAAATTGTAGACATTGTCAGAAAATTCAGAAAATTTTTTTTTAATCGGAAGGTCCCATACCGTAATCTAAAAAAATATTTCGAATTTTTTGAATTTTCCGAATTTTTTTCTTGACTAAAAATCTCTGAAAATCGAGATAATGAATCGAAAAAAAAAATAAAATTATTGAATAATTAATAAATTACATCCCTCTGTCCTAATGCCTGCAGGGKACGGTACCTCCCTTCTATTTGCTAAGTGCCTTTTCCACATGACGTAATCACTAATTACCCGCAATCAGTCTTCAATCACTTACCATTCAACACTCTCGCATCGTAACTTTGCGTTCGAATGTTCGCTGACGCTTTTGTTGCCGGTGTTTCGTCGATTGTCTTCCTGTAATTAGTTAATGGGGGTACTGTACTTGAGAATTTTGGTGGAGAGAATGCAAATTCATTAAAATGTATTTACTAATTGAGGTGCAAAGTACATAGGCAGTTTGAAAAAAAATTCCAGAAAAAATTTTTTTTTGAAATTTTTTTTCCCTAAAATTCAAAATTGCTCAATTTCGATAAAAATCGATACCACGAGCTGAAATGAGCTAAAAAATAAGAATACTCAAAAAAAAAAATTTCAAAAAAGTCGAAAATTGAGAAAAAATTTTTTTCGAAAAATCCCAAAAAAAAATTTTTCTCAATTTTCGACTTTTTTGAATTTTTTTTTCGGTATTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCCCATACCGTAATCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGAATGGTAAGTGATTGAAGACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCCCATACCGTAATCTAAAAAAATATTTCGAATTTTTTGAATTTTCCGAATTTTTTTCTTGACTAAAAATCTCTGAAAATCGAGATAATGAATCGAAAAAAAAAATAAAATTATTGAATAATTAATAAATTACATCCCTCTGTCCTAATGCCTGCAGGGGACGGTACCTCCCTTCTATTTGCTAAGTGCCTTTTCCACATGACGTAATCACTAATTACCCGCAATCAGTCTTCAATCACTTACCATTCA</canonical_amplicon>
		<polymorphic_amplicon>GTCCCATACCGTAATCTAAAAAAATATTTCGAATTTTTTGAATTTTCCGAATTTTTTTCTTGACTAAAAATCTCTGAAAATCGAGATAATGAATCGAAAAAAAAAATAAAATTATTGAATAATTAATAAATTACATCCCTCTGTCCTAATGCCTGCAGGGKACGGTACCTCCCTTCTATTTGCTAAGTGCCTTTTCCACATGACGTAATCACTAATTACCCGCAATCAGTCTTCAATCACTTACCATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23882</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>893063</contig_pos>
        <strand></strand>
        <context>CTCCCTTCTA[T/C]TTGCTAAGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATTACATCCCTCTGTCCTAATGCCTGCAGGGGACGGTACCTCCCTTCTA</left_flank>
        <right_flank>TTGCTAAGTGCCTTTTCCACATGACGTAATCACTAATTACCCGCAATCAG</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCAGAAGGCAGTGAACAATTGAGCCGCGCCTTCAAATAGCTGGTCCATCGCTCGTTGGCCGGACGGGCGCCCCCTTTATCGTTCTTGCACACCCTGGCGACACGGGCATAGATCTGAAAGGGTCTCAATTGGTGGTTAGAGGGTCTCCGAGGGTCACTAGGTGCTTACCTGTGACTCCTCATTATTATCGATTGCCTCGCTGGCGATCTCTCGGAACCAAAAGTAGACGTGCTCTTTGTAGGCAAAGGTGGCGACGAAGTTGGGAGCTGAAATTGTAGACATTGTCAGAAAATTCAGAAAATTTTTTTTTAATCGGAAGGTCCCATACCGTAATCTAAAAAAATATTTCGAATTTTTTGAATTTTCCGAATTTTTTTCTTGACTAAAAATCTCTGAAAATCGAGATAATGAATCGAAAAAAAAAATAAAATTATTGAATAATTAATAAATTACATCCCTCTGTCCTAATGCCTGCAGGGGACGGTACCTCCCTTCTATTTGCTAAGTGCCTTTTCCACATGACGTAATCACTAATTACCCGCAATCAGTCTTCAATCACTTACCATTCAACACTCTCGCATCGTAACTTTGCGTTCGAATGTTCGCTGACGCTTTTGTTGCCGGTGTTTCGTCGATTGTCTTCCTGTAATTAGTTAATGGGGGTACTGTACTTGAGAATTTTGGTGGAGAGAATGCAAATTCATTAAAATGTATTTACTAATTGAGGTGCAAAGTACATAGGCAGTTTGAAAAAAAATTCCAGAAAAAATTTTTTTTTGAAATTTTTTTTCCCTAAAATTCAAAATTGCTCAATTTCGATAAAAATCGATACCACGAGCTGAAATGAGCTAAAAAATAAGAATACTCAAAAAAAAAAATTTCAAAAAAGTCGAAAATTGAGAAAAAATTTTTTTCGAAAAATCCCAAAAAAAAATTTTTCTCAATTTTCGACTTTTTTGAATTTTTTTTTCGGTATTCTCATTTTAAGCCAGTTTCAG</canonical>
            <polymorphic>ATCCAGAAGGCAGTGAACAATTGAGCCGCGCCTTCAAATAGCTGGTCCATCGCTCGTTGGCCGGACGGGCGCCCCCTTTATCGTTCTTGCACACCCTGGCGACACGGGCATAGATCTGAAAGGGTCTCAATTGGTGGTTAGAGGGTCTCCGAGGGTCACTAGGTGCTTACCTGTGACTCCTCATTATTATCGATTGCCTCGCTGGCGATCTCTCGGAACCAAAAGTAGACGTGCTCTTTGTAGGCAAAGGTGGCGACGAAGTTGGGAGCTGAAATTGTAGACATTGTCAGAAAATTCAGAAAATTTTTTTTTAATCGGAAGGTCCCATACCGTAATCTAAAAAAATATTTCGAATTTTTTGAATTTTCCGAATTTTTTTCTTGACTAAAAATCTCTGAAAATCGAGATAATGAATCGAAAAAAAAAATAAAATTATTGAATAATTAATAAATTACATCCCTCTGTCCTAATGCCTGCAGGGGACGGTACCTCCCTTCTAYTTGCTAAGTGCCTTTTCCACATGACGTAATCACTAATTACCCGCAATCAGTCTTCAATCACTTACCATTCAACACTCTCGCATCGTAACTTTGCGTTCGAATGTTCGCTGACGCTTTTGTTGCCGGTGTTTCGTCGATTGTCTTCCTGTAATTAGTTAATGGGGGTACTGTACTTGAGAATTTTGGTGGAGAGAATGCAAATTCATTAAAATGTATTTACTAATTGAGGTGCAAAGTACATAGGCAGTTTGAAAAAAAATTCCAGAAAAAATTTTTTTTTGAAATTTTTTTTCCCTAAAATTCAAAATTGCTCAATTTCGATAAAAATCGATACCACGAGCTGAAATGAGCTAAAAAATAAGAATACTCAAAAAAAAAAATTTCAAAAAAGTCGAAAATTGAGAAAAAATTTTTTTCGAAAAATCCCAAAAAAAAATTTTTCTCAATTTTCGACTTTTTTGAATTTTTTTTTCGGTATTCTCATTTTAAGCCAGTTTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCCCATACCGTAATCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGAATGGTAAGTGATTGAAGACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCCCATACCGTAATCTAAAAAAATATTTCGAATTTTTTGAATTTTCCGAATTTTTTTCTTGACTAAAAATCTCTGAAAATCGAGATAATGAATCGAAAAAAAAAATAAAATTATTGAATAATTAATAAATTACATCCCTCTGTCCTAATGCCTGCAGGGGACGGTACCTCCCTTCTATTTGCTAAGTGCCTTTTCCACATGACGTAATCACTAATTACCCGCAATCAGTCTTCAATCACTTACCATTCA</canonical_amplicon>
		<polymorphic_amplicon>GTCCCATACCGTAATCTAAAAAAATATTTCGAATTTTTTGAATTTTCCGAATTTTTTTCTTGACTAAAAATCTCTGAAAATCGAGATAATGAATCGAAAAAAAAAATAAAATTATTGAATAATTAATAAATTACATCCCTCTGTCCTAATGCCTGCAGGGGACGGTACCTCCCTTCTAYTTGCTAAGTGCCTTTTCCACATGACGTAATCACTAATTACCCGCAATCAGTCTTCAATCACTTACCATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23883</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>894708</contig_pos>
        <strand>+</strand>
        <context>AAAAATCCTG[A/T]TTTTTTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTG</left_flank>
        <right_flank>TTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGAGAAGGCGTGCGTCCCGCAGACCAGGGAGACGCCCGCTGATTTTCGTGCCAGGACCCGAATGTAGTTCTGACAGTCCGTTTTCGATTTTCCCTTCATTATACATTCTTCAATGTGCTCCGCCGGGGGTTTCCAGTCGATTTTCTGGAAAGAATATGGGGTACAGGGGAGCTTCTTGCTAAAAATTCAAATTTTTGGTTTTTCTGAAAATTAGTTTTTTGAATTTTCAAAAATTATATATTTTACAATTTTCTGAGAATTTTTCGAATTTTCTTTTTTAAATAAAATTTTCAGAAGAATCAATTTTTTTCTTAATTTTCCGGAAATTCAGTTTTTCACTATTTCTAAAAATTTTATTAAAATTCAATTTTTCAGAATTTGCCTGAAAATGCGATTTTTTCGTAATTTTAAGAAAATTATATTTTTGTATTTTCTTAAAATTCAAAATTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTGTTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGAGAGCGAGAGATTGTAGACGGCGTTT</canonical>
            <polymorphic>GGAGAGAAGGCGTGCGTCCCGCAGACCAGGGAGACGCCCGCTGATTTTCGTGCCAGGACCCGAATGTAGTTCTGACAGTCCGTTTTCGATTTTCCCTTCATTATACATTCTTCAATGTGCTCCGCCGGGGGTTTCCAGTCGATTTTCTGGAAAGAATATGGGGTACAGGGGAGCTTCTTGCTAAAAATTCAAATTTTTGGTTTTTCTGAAAATTAGTTTTTTGAATTTTCAAAAATTATATATTTTACAATTTTCTGAGAATTTTTCGAATTTTCTTTTTTAAATAAAATTTTCAGAAGAATCAATTTTTTTCTTAATTTTCCGGAAATTCAGTTTTTCACTATTTCTAAAAATTTTATTAAAATTCAATTTTTCAGAATTTGCCTGAAAATGCGATTTTTTCGTAATTTTAAGAAAATTATATTTTTGTATTTTCTTAAAATTCAAAATTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTGWTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGAGAGCGAGAGATTGTAGACGGCGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAATTCAGTTTTTCACTATTTC</pcr_primer_p1>
		<pcr_primer_p2>ATTTGAGCATCCCTAAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GGAAATTCAGTTTTTCACTATTTCTAAAAATTTTATTAAAATTCAATTTTTCAGAATTTGCCTGAAAATGCGATTTTTTCGTAATTTTAAGAAAATTATATTTTTGTATTTTCTTAAAATTCAAAATTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTGTTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAAT</canonical_amplicon>
		<polymorphic_amplicon>GGAAATTCAGTTTTTCACTATTTCTAAAAATTTTATTAAAATTCAATTTTTCAGAATTTGCCTGAAAATGCGATTTTTTCGTAATTTTAAGAAAATTATATTTTTGTATTTTCTTAAAATTCAAAATTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTGWTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23884</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>894819</contig_pos>
        <strand>+</strand>
        <context>TTTTTTCGAA[C/G]TTTCTGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAA</left_flank>
        <right_flank>TTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAATGTGCTCCGCCGGGGGTTTCCAGTCGATTTTCTGGAAAGAATATGGGGTACAGGGGAGCTTCTTGCTAAAAATTCAAATTTTTGGTTTTTCTGAAAATTAGTTTTTTGAATTTTCAAAAATTATATATTTTACAATTTTCTGAGAATTTTTCGAATTTTCTTTTTTAAATAAAATTTTCAGAAGAATCAATTTTTTTCTTAATTTTCCGGAAATTCAGTTTTTCACTATTTCTAAAAATTTTATTAAAATTCAATTTTTCAGAATTTGCCTGAAAATGCGATTTTTTCGTAATTTTAAGAAAATTATATTTTTGTATTTTCTTAAAATTCAAAATTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTGTTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGAGAGCGAGAGATTGTAGACGGCGTTTCTGGAAAATTCCTTGTTTTTTTTCAAGAATTTCTGCTATCCTATCCAATTTCAACCCTCTAAACATCATGTTTTTTTTTCATTTTTTCCGAAATTTCCTCTAATTTCAACC</canonical>
            <polymorphic>TCAATGTGCTCCGCCGGGGGTTTCCAGTCGATTTTCTGGAAAGAATATGGGGTACAGGGGAGCTTCTTGCTAAAAATTCAAATTTTTGGTTTTTCTGAAAATTAGTTTTTTGAATTTTCAAAAATTATATATTTTACAATTTTCTGAGAATTTTTCGAATTTTCTTTTTTAAATAAAATTTTCAGAAGAATCAATTTTTTTCTTAATTTTCCGGAAATTCAGTTTTTCACTATTTCTAAAAATTTTATTAAAATTCAATTTTTCAGAATTTGCCTGAAAATGCGATTTTTTCGTAATTTTAAGAAAATTATATTTTTGTATTTTCTTAAAATTCAAAATTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTGTTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAASTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGAGAGCGAGAGATTGTAGACGGCGTTTCTGGAAAATTCCTTGTTTTTTTTCAAGAATTTCTGCTATCCTATCCAATTTCAACCCTCTAAACATCATGTTTTTTTTTCATTTTTTCCGAAATTTCCTCTAATTTCAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>136 74 64 63 62 39 36 32 28 27 27 25 25 25 24 21 20 20 19 19 19 17 17 15 15 15 15 15 13 12 11 11 11 9 7 6 6</canonical_bands>
                <polymorphic_bands>136 74 64 63 62 43 39 36 32 27 27 25 25 25 24 21 20 20 19 19 19 17 17 15 15 15 15 13 12 11 11 11 9 7 6 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>118 74 53 45 28 28 27 25 25 25 24 21 19 19 19 19 19 19 18 17 16 16 15 15 15 15 15 13 13 12 12 12 11 11 11 11 11 11 11 11 10 10 10 10 9 9 9 7 6 6 5 5 5</canonical_bands>
                <polymorphic_bands>118 74 53 45 43 28 27 25 25 25 24 21 19 19 19 19 19 19 18 17 16 16 15 15 15 15 13 13 12 12 12 11 11 11 11 11 11 11 11 10 10 10 10 9 9 9 7 6 6 5 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCAGTTTTCCACCTATTGAA</pcr_primer_p1>
		<pcr_primer_p2>TGGAAGCTCAAAAATCATAGA</pcr_primer_p2>
		<pcr_amplicon_size>413</pcr_amplicon_size>
		<canonical_amplicon>AATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCA</canonical_amplicon>
		<polymorphic_amplicon>AATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAASTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23885</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>894852</contig_pos>
        <strand>+</strand>
        <context>GAAAATTCAA[A/G]TTTTTTTAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAA</left_flank>
        <right_flank>TTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGGAAAGAATATGGGGTACAGGGGAGCTTCTTGCTAAAAATTCAAATTTTTGGTTTTTCTGAAAATTAGTTTTTTGAATTTTCAAAAATTATATATTTTACAATTTTCTGAGAATTTTTCGAATTTTCTTTTTTAAATAAAATTTTCAGAAGAATCAATTTTTTTCTTAATTTTCCGGAAATTCAGTTTTTCACTATTTCTAAAAATTTTATTAAAATTCAATTTTTCAGAATTTGCCTGAAAATGCGATTTTTTCGTAATTTTAAGAAAATTATATTTTTGTATTTTCTTAAAATTCAAAATTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTGTTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGAGAGCGAGAGATTGTAGACGGCGTTTCTGGAAAATTCCTTGTTTTTTTTCAAGAATTTCTGCTATCCTATCCAATTTCAACCCTCTAAACATCATGTTTTTTTTTCATTTTTTCCGAAATTTCCTCTAATTTCAACCCCCTAAAACTGAAAAAACCGTAGTAAAATCGGC</canonical>
            <polymorphic>TTCTGGAAAGAATATGGGGTACAGGGGAGCTTCTTGCTAAAAATTCAAATTTTTGGTTTTTCTGAAAATTAGTTTTTTGAATTTTCAAAAATTATATATTTTACAATTTTCTGAGAATTTTTCGAATTTTCTTTTTTAAATAAAATTTTCAGAAGAATCAATTTTTTTCTTAATTTTCCGGAAATTCAGTTTTTCACTATTTCTAAAAATTTTATTAAAATTCAATTTTTCAGAATTTGCCTGAAAATGCGATTTTTTCGTAATTTTAAGAAAATTATATTTTTGTATTTTCTTAAAATTCAAAATTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTGTTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAARTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGAGAGCGAGAGATTGTAGACGGCGTTTCTGGAAAATTCCTTGTTTTTTTTCAAGAATTTCTGCTATCCTATCCAATTTCAACCCTCTAAACATCATGTTTTTTTTTCATTTTTTCCGAAATTTCCTCTAATTTCAACCCCCTAAAACTGAAAAAACCGTAGTAAAATCGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>118 53 45 43 41 28 28 27 25 25 25 24 21 19 19 19 19 19 19 18 17 16 16 15 15 15 15 15 13 13 12 12 12 11 11 11 11 11 11 11 11 10 10 10 9 9 9 7 6 6 5 5 5</canonical_bands>
                <polymorphic_bands>118 53 45 43 41 28 28 27 25 25 25 24 21 19 19 19 19 19 19 18 17 17 16 16 15 15 15 15 15 13 13 12 12 11 11 11 11 11 11 11 11 10 10 10 9 9 9 7 6 6 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATGCTCAAATTTTTGGATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTGTGAATCATGTAAGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>402</pcr_amplicon_size>
		<canonical_amplicon>GATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAA</canonical_amplicon>
		<polymorphic_amplicon>GATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAARTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23886</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>894927</contig_pos>
        <strand>+</strand>
        <context>ATTCCCGAAA[A/G]TCAAATTCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAA</left_flank>
        <right_flank>TCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAATTTTCAAAAATTATATATTTTACAATTTTCTGAGAATTTTTCGAATTTTCTTTTTTAAATAAAATTTTCAGAAGAATCAATTTTTTTCTTAATTTTCCGGAAATTCAGTTTTTCACTATTTCTAAAAATTTTATTAAAATTCAATTTTTCAGAATTTGCCTGAAAATGCGATTTTTTCGTAATTTTAAGAAAATTATATTTTTGTATTTTCTTAAAATTCAAAATTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTGTTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGAGAGCGAGAGATTGTAGACGGCGTTTCTGGAAAATTCCTTGTTTTTTTTCAAGAATTTCTGCTATCCTATCCAATTTCAACCCTCTAAACATCATGTTTTTTTTTCATTTTTTCCGAAATTTCCTCTAATTTCAACCCCCTAAAACTGAAAAAACCGTAGTAAAATCGGCACTAACGTAGTATCAAATTTTTTGAATTTGGTGCCAAAATGCGGGTGTCCCAGAGGAAGGGAAACAAGGCGATTA</canonical>
            <polymorphic>TTTGAATTTTCAAAAATTATATATTTTACAATTTTCTGAGAATTTTTCGAATTTTCTTTTTTAAATAAAATTTTCAGAAGAATCAATTTTTTTCTTAATTTTCCGGAAATTCAGTTTTTCACTATTTCTAAAAATTTTATTAAAATTCAATTTTTCAGAATTTGCCTGAAAATGCGATTTTTTCGTAATTTTAAGAAAATTATATTTTTGTATTTTCTTAAAATTCAAAATTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTGTTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAARTCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGAGAGCGAGAGATTGTAGACGGCGTTTCTGGAAAATTCCTTGTTTTTTTTCAAGAATTTCTGCTATCCTATCCAATTTCAACCCTCTAAACATCATGTTTTTTTTTCATTTTTTCCGAAATTTCCTCTAATTTCAACCCCCTAAAACTGAAAAAACCGTAGTAAAATCGGCACTAACGTAGTATCAAATTTTTTGAATTTGGTGCCAAAATGCGGGTGTCCCAGAGGAAGGGAAACAAGGCGATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTGAGAATCCAATTATTAAAGA</pcr_primer_p1>
		<pcr_primer_p2>TGGAAGCTCAAAAATCATAGA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>TTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCA</canonical_amplicon>
		<polymorphic_amplicon>TTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAARTCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23887</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>894962</contig_pos>
        <strand>+</strand>
        <context>TTCGATTTTT[C/T]WGAATTTCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTT</left_flank>
        <right_flank>AGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAGAATTTTTCGAATTTTCTTTTTTAAATAAAATTTTCAGAAGAATCAATTTTTTTCTTAATTTTCCGGAAATTCAGTTTTTCACTATTTCTAAAAATTTTATTAAAATTCAATTTTTCAGAATTTGCCTGAAAATGCGATTTTTTCGTAATTTTAAGAAAATTATATTTTTGTATTTTCTTAAAATTCAAAATTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTGTTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGAGAGCGAGAGATTGTAGACGGCGTTTCTGGAAAATTCCTTGTTTTTTTTCAAGAATTTCTGCTATCCTATCCAATTTCAACCCTCTAAACATCATGTTTTTTTTTCATTTTTTCCGAAATTTCCTCTAATTTCAACCCCCTAAAACTGAAAAAACCGTAGTAAAATCGGCACTAACGTAGTATCAAATTTTTTGAATTTGGTGCCAAAATGCGGGTGTCCCAGAGGAAGGGAAACAAGGCGATTATTCTGCCTGAGGTTATAATTTTGAAAAAAAATTGC</canonical>
            <polymorphic>CTGAGAATTTTTCGAATTTTCTTTTTTAAATAAAATTTTCAGAAGAATCAATTTTTTTCTTAATTTTCCGGAAATTCAGTTTTTCACTATTTCTAAAAATTTTATTAAAATTCAATTTTTCAGAATTTGCCTGAAAATGCGATTTTTTCGTAATTTTAAGAAAATTATATTTTTGTATTTTCTTAAAATTCAAAATTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTGTTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTYAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGAGAGCGAGAGATTGTAGACGGCGTTTCTGGAAAATTCCTTGTTTTTTTTCAAGAATTTCTGCTATCCTATCCAATTTCAACCCTCTAAACATCATGTTTTTTTTTCATTTTTTCCGAAATTTCCTCTAATTTCAACCCCCTAAAACTGAAAAAACCGTAGTAAAATCGGCACTAACGTAGTATCAAATTTTTTGAATTTGGTGCCAAAATGCGGGTGTCCCAGAGGAAGGGAAACAAGGCGATTATTCTGCCTGAGGTTATAATTTTGAAAAAAAATTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>236 165 112 102 98 81 77 41 28 26 17 17</canonical_bands>
                <polymorphic_bands>236 165 115 112 102 81 77 41 28 26 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTGAGAATCCAATTATTAAAGA</pcr_primer_p1>
		<pcr_primer_p2>TGGAAGCTCAAAAATCATAGA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>TTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCA</canonical_amplicon>
		<polymorphic_amplicon>TTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTYAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23888</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>894963</contig_pos>
        <strand>+</strand>
        <context>TCGATTTTTY[A/T]GAATTTCTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTC</left_flank>
        <right_flank>GAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGAATTTTTCGAATTTTCTTTTTTAAATAAAATTTTCAGAAGAATCAATTTTTTTCTTAATTTTCCGGAAATTCAGTTTTTCACTATTTCTAAAAATTTTATTAAAATTCAATTTTTCAGAATTTGCCTGAAAATGCGATTTTTTCGTAATTTTAAGAAAATTATATTTTTGTATTTTCTTAAAATTCAAAATTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTGTTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGAGAGCGAGAGATTGTAGACGGCGTTTCTGGAAAATTCCTTGTTTTTTTTCAAGAATTTCTGCTATCCTATCCAATTTCAACCCTCTAAACATCATGTTTTTTTTTCATTTTTTCCGAAATTTCCTCTAATTTCAACCCCCTAAAACTGAAAAAACCGTAGTAAAATCGGCACTAACGTAGTATCAAATTTTTTGAATTTGGTGCCAAAATGCGGGTGTCCCAGAGGAAGGGAAACAAGGCGATTATTCTGCCTGAGGTTATAATTTTGAAAAAAAATTGCA</canonical>
            <polymorphic>TGAGAATTTTTCGAATTTTCTTTTTTAAATAAAATTTTCAGAAGAATCAATTTTTTTCTTAATTTTCCGGAAATTCAGTTTTTCACTATTTCTAAAAATTTTATTAAAATTCAATTTTTCAGAATTTGCCTGAAAATGCGATTTTTTCGTAATTTTAAGAAAATTATATTTTTGTATTTTCTTAAAATTCAAAATTTTCAAACTTCCAAAAAATTGAATTTTTCTAATTTTCGGAAAAATCCTGTTTTTTTTTCAACAATCAGTTTTCCACCTATTGAAATTTTCTAAAAATTCAATGTTGGAATTTTAGGGATGCTCAAATTTTTGGATTTTCAGAAAATTTCATTTTTTCGAATTTTCTGAAAAATCCATTTTTCTGAAAATTCAATTTTTTTTAGAATTTTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCWGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCAGACGGCTCTGCCACGTGGGGCAAACTTACATGATTCACAGAAAGCGTCGAGAGCGAGAGATTGTAGACGGCGTTTCTGGAAAATTCCTTGTTTTTTTTCAAGAATTTCTGCTATCCTATCCAATTTCAACCCTCTAAACATCATGTTTTTTTTTCATTTTTTCCGAAATTTCCTCTAATTTCAACCCCCTAAAACTGAAAAAACCGTAGTAAAATCGGCACTAACGTAGTATCAAATTTTTTGAATTTGGTGCCAAAATGCGGGTGTCCCAGAGGAAGGGAAACAAGGCGATTATTCTGCCTGAGGTTATAATTTTGAAAAAAAATTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTGAGAATCCAATTATTAAAGA</pcr_primer_p1>
		<pcr_primer_p2>TGGAAGCTCAAAAATCATAGA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>TTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCAGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCA</canonical_amplicon>
		<polymorphic_amplicon>TTCTGAGAATCCAATTATTAAAGAATTTTTAGAAAAATCCATTTTTTCGAAATTCCCGAAAATCAAATTCTTGGGTTTTCTGAAAATTCGATTTTTCWGAATTTCTTGAGATTCGATTTTTTCGAATTTTCTAAAAATTCGAATTTTTTGATAATTCGAAAAATTTTCAAAAAAATTCAAAAAAATGGAATTTTCTGAAAATCTTTTTTCTCGAATTTCCCTGAAAATCCCAATTTTCAGCTTAAAATCTATGATTTTTGAGCTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23889</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>914017</contig_pos>
        <strand>+</strand>
        <context>TCGCCATCTC[C/T]YRTCGGTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCATCTC</left_flank>
        <right_flank>CGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCGATGAAGTCATCATCGTGAAGATTCTAAAATCTGGCATATTGAGAGTTTTTTGATTTTTTTGAACTTTTTTGTTTTTTTTTAAAGTCTGGGACGTGGAGCCAACAATTCCGCAAATCAGACACATTTCTTTTTGTTCTCTACATCCAGACTCTCTAATTAGAAATATGCTGGGTAAGTTTGGCTTATTTGAAATAGCCTTTTTAAAATCTTTTTTATCTCAAATTTCTAGGCTGGCCCCGAAAACGGGCCTTTTTTGGGTTTTTTCACCTAGAAATCTGGATTTTAAATCAATTTTCGAATTCTGCTCAAAAAATAAGCCTACACCCTTTTTTCCGGGTCAAAAACAGCCCTAAATAGCCCTAAATAAAGCCTATTTCCTCTTCCCCTCCCCCTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCATCTCTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAAGAGAGTGTTGAATAATACTGTAATTTTTGGAATCGCTTCTTCGGGGTTATCCGTTGAGGCAATAGAAAGATGCATTCTGAATTATATTTCCAGAGTATTTCGTAACAAATCTAATGGTTTTCCTTCTCCTCCTCACCGTGCCAACGTACTGTTGCAAACGGAAGAAAACGTCGGTGTCAAAGAAGAAGCACAAGAAGCGGCGTAAGGAGAAAAAGACGGGGAAGCATTCGACAACTCCTACAACGACAACACCGAATCTTCCATTGACTCCGTTGACACCCCAAACGCCTCAAATGCCAACTCCAGTGATGACCCAGACTCCAAAAATAGCTACAACGGCTACACCTGGCTCCACGGATTCTGCAGAATCTTTGAATAATAAAAAAGAAGTTGTGATTCTAATCGGTTCGAATAAATCCAAAGAAAGTGTGGATAAGAATGAGGAGG</canonical>
            <polymorphic>TGCGATGAAGTCATCATCGTGAAGATTCTAAAATCTGGCATATTGAGAGTTTTTTGATTTTTTTGAACTTTTTTGTTTTTTTTTAAAGTCTGGGACGTGGAGCCAACAATTCCGCAAATCAGACACATTTCTTTTTGTTCTCTACATCCAGACTCTCTAATTAGAAATATGCTGGGTAAGTTTGGCTTATTTGAAATAGCCTTTTTAAAATCTTTTTTATCTCAAATTTCTAGGCTGGCCCCGAAAACGGGCCTTTTTTGGGTTTTTTCACCTAGAAATCTGGATTTTAAATCAATTTTCGAATTCTGCTCAAAAAATAAGCCTACACCCTTTTTTCCGGGTCAAAAACAGCCCTAAATAGCCCTAAATAAAGCCTATTTCCTCTTCCCCTCCCCCTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCATCTCYCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAAGAGAGTGTTGAATAATACTGTAATTTTTGGAATCGCTTCTTCGGGGTTATCCGTTGAGGCAATAGAAAGATGCATTCTGAATTATATTTCCAGAGTATTTCGTAACAAATCTAATGGTTTTCCTTCTCCTCCTCACCGTGCCAACGTACTGTTGCAAACGGAAGAAAACGTCGGTGTCAAAGAAGAAGCACAAGAAGCGGCGTAAGGAGAAAAAGACGGGGAAGCATTCGACAACTCCTACAACGACAACACCGAATCTTCCATTGACTCCGTTGACACCCCAAACGCCTCAAATGCCAACTCCAGTGATGACCCAGACTCCAAAAATAGCTACAACGGCTACACCTGGCTCCACGGATTCTGCAGAATCTTTGAATAATAAAAAAGAAGTTGTGATTCTAATCGGTTCGAATAAATCCAAAGAAAGTGTGGATAAGAATGAGGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCAAAAACAGCCCTAAATA</pcr_primer_p1>
		<pcr_primer_p2>GCGATTCCAAAAATTACAGTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTCAAAAACAGCCCTAAATAGCCCTAAATAAAGCCTATTTCCTCTTCCCCTCCCCCTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCATCTCTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAAGAGAGTGTTGAATAATACTGTAATTTTTGGAATCGC</canonical_amplicon>
		<polymorphic_amplicon>GGTCAAAAACAGCCCTAAATAGCCCTAAATAAAGCCTATTTCCTCTTCCCCTCCCCCTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCATCTCYCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAAGAGAGTGTTGAATAATACTGTAATTTTTGGAATCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23890</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>914018</contig_pos>
        <strand>+</strand>
        <context>CGCCATCTCY[C/T]RTCGGTTTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCATCTCT</left_flank>
        <right_flank>GTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGATGAAGTCATCATCGTGAAGATTCTAAAATCTGGCATATTGAGAGTTTTTTGATTTTTTTGAACTTTTTTGTTTTTTTTTAAAGTCTGGGACGTGGAGCCAACAATTCCGCAAATCAGACACATTTCTTTTTGTTCTCTACATCCAGACTCTCTAATTAGAAATATGCTGGGTAAGTTTGGCTTATTTGAAATAGCCTTTTTAAAATCTTTTTTATCTCAAATTTCTAGGCTGGCCCCGAAAACGGGCCTTTTTTGGGTTTTTTCACCTAGAAATCTGGATTTTAAATCAATTTTCGAATTCTGCTCAAAAAATAAGCCTACACCCTTTTTTCCGGGTCAAAAACAGCCCTAAATAGCCCTAAATAAAGCCTATTTCCTCTTCCCCTCCCCCTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCATCTCTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAAGAGAGTGTTGAATAATACTGTAATTTTTGGAATCGCTTCTTCGGGGTTATCCGTTGAGGCAATAGAAAGATGCATTCTGAATTATATTTCCAGAGTATTTCGTAACAAATCTAATGGTTTTCCTTCTCCTCCTCACCGTGCCAACGTACTGTTGCAAACGGAAGAAAACGTCGGTGTCAAAGAAGAAGCACAAGAAGCGGCGTAAGGAGAAAAAGACGGGGAAGCATTCGACAACTCCTACAACGACAACACCGAATCTTCCATTGACTCCGTTGACACCCCAAACGCCTCAAATGCCAACTCCAGTGATGACCCAGACTCCAAAAATAGCTACAACGGCTACACCTGGCTCCACGGATTCTGCAGAATCTTTGAATAATAAAAAAGAAGTTGTGATTCTAATCGGTTCGAATAAATCCAAAGAAAGTGTGGATAAGAATGAGGAGGA</canonical>
            <polymorphic>GCGATGAAGTCATCATCGTGAAGATTCTAAAATCTGGCATATTGAGAGTTTTTTGATTTTTTTGAACTTTTTTGTTTTTTTTTAAAGTCTGGGACGTGGAGCCAACAATTCCGCAAATCAGACACATTTCTTTTTGTTCTCTACATCCAGACTCTCTAATTAGAAATATGCTGGGTAAGTTTGGCTTATTTGAAATAGCCTTTTTAAAATCTTTTTTATCTCAAATTTCTAGGCTGGCCCCGAAAACGGGCCTTTTTTGGGTTTTTTCACCTAGAAATCTGGATTTTAAATCAATTTTCGAATTCTGCTCAAAAAATAAGCCTACACCCTTTTTTCCGGGTCAAAAACAGCCCTAAATAGCCCTAAATAAAGCCTATTTCCTCTTCCCCTCCCCCTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCATCTCTYGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAAGAGAGTGTTGAATAATACTGTAATTTTTGGAATCGCTTCTTCGGGGTTATCCGTTGAGGCAATAGAAAGATGCATTCTGAATTATATTTCCAGAGTATTTCGTAACAAATCTAATGGTTTTCCTTCTCCTCCTCACCGTGCCAACGTACTGTTGCAAACGGAAGAAAACGTCGGTGTCAAAGAAGAAGCACAAGAAGCGGCGTAAGGAGAAAAAGACGGGGAAGCATTCGACAACTCCTACAACGACAACACCGAATCTTCCATTGACTCCGTTGACACCCCAAACGCCTCAAATGCCAACTCCAGTGATGACCCAGACTCCAAAAATAGCTACAACGGCTACACCTGGCTCCACGGATTCTGCAGAATCTTTGAATAATAAAAAAGAAGTTGTGATTCTAATCGGTTCGAATAAATCCAAAGAAAGTGTGGATAAGAATGAGGAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>504 275 221</canonical_bands>
                <polymorphic_bands>725 275</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTCAAAAACAGCCCTAAATA</pcr_primer_p1>
		<pcr_primer_p2>GCGATTCCAAAAATTACAGTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTCAAAAACAGCCCTAAATAGCCCTAAATAAAGCCTATTTCCTCTTCCCCTCCCCCTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCATCTCTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAAGAGAGTGTTGAATAATACTGTAATTTTTGGAATCGC</canonical_amplicon>
		<polymorphic_amplicon>GGTCAAAAACAGCCCTAAATAGCCCTAAATAAAGCCTATTTCCTCTTCCCCTCCCCCTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCATCTCTYGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAAGAGAGTGTTGAATAATACTGTAATTTTTGGAATCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23891</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>914019</contig_pos>
        <strand>+</strand>
        <context>GCCATCTCYY[A/G]TCGGTTTTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCATCTCTC</left_flank>
        <right_flank>TCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATGAAGTCATCATCGTGAAGATTCTAAAATCTGGCATATTGAGAGTTTTTTGATTTTTTTGAACTTTTTTGTTTTTTTTTAAAGTCTGGGACGTGGAGCCAACAATTCCGCAAATCAGACACATTTCTTTTTGTTCTCTACATCCAGACTCTCTAATTAGAAATATGCTGGGTAAGTTTGGCTTATTTGAAATAGCCTTTTTAAAATCTTTTTTATCTCAAATTTCTAGGCTGGCCCCGAAAACGGGCCTTTTTTGGGTTTTTTCACCTAGAAATCTGGATTTTAAATCAATTTTCGAATTCTGCTCAAAAAATAAGCCTACACCCTTTTTTCCGGGTCAAAAACAGCCCTAAATAGCCCTAAATAAAGCCTATTTCCTCTTCCCCTCCCCCTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCATCTCTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAAGAGAGTGTTGAATAATACTGTAATTTTTGGAATCGCTTCTTCGGGGTTATCCGTTGAGGCAATAGAAAGATGCATTCTGAATTATATTTCCAGAGTATTTCGTAACAAATCTAATGGTTTTCCTTCTCCTCCTCACCGTGCCAACGTACTGTTGCAAACGGAAGAAAACGTCGGTGTCAAAGAAGAAGCACAAGAAGCGGCGTAAGGAGAAAAAGACGGGGAAGCATTCGACAACTCCTACAACGACAACACCGAATCTTCCATTGACTCCGTTGACACCCCAAACGCCTCAAATGCCAACTCCAGTGATGACCCAGACTCCAAAAATAGCTACAACGGCTACACCTGGCTCCACGGATTCTGCAGAATCTTTGAATAATAAAAAAGAAGTTGTGATTCTAATCGGTTCGAATAAATCCAAAGAAAGTGTGGATAAGAATGAGGAGGAG</canonical>
            <polymorphic>CGATGAAGTCATCATCGTGAAGATTCTAAAATCTGGCATATTGAGAGTTTTTTGATTTTTTTGAACTTTTTTGTTTTTTTTTAAAGTCTGGGACGTGGAGCCAACAATTCCGCAAATCAGACACATTTCTTTTTGTTCTCTACATCCAGACTCTCTAATTAGAAATATGCTGGGTAAGTTTGGCTTATTTGAAATAGCCTTTTTAAAATCTTTTTTATCTCAAATTTCTAGGCTGGCCCCGAAAACGGGCCTTTTTTGGGTTTTTTCACCTAGAAATCTGGATTTTAAATCAATTTTCGAATTCTGCTCAAAAAATAAGCCTACACCCTTTTTTCCGGGTCAAAAACAGCCCTAAATAGCCCTAAATAAAGCCTATTTCCTCTTCCCCTCCCCCTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCATCTCTCRTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAAGAGAGTGTTGAATAATACTGTAATTTTTGGAATCGCTTCTTCGGGGTTATCCGTTGAGGCAATAGAAAGATGCATTCTGAATTATATTTCCAGAGTATTTCGTAACAAATCTAATGGTTTTCCTTCTCCTCCTCACCGTGCCAACGTACTGTTGCAAACGGAAGAAAACGTCGGTGTCAAAGAAGAAGCACAAGAAGCGGCGTAAGGAGAAAAAGACGGGGAAGCATTCGACAACTCCTACAACGACAACACCGAATCTTCCATTGACTCCGTTGACACCCCAAACGCCTCAAATGCCAACTCCAGTGATGACCCAGACTCCAAAAATAGCTACAACGGCTACACCTGGCTCCACGGATTCTGCAGAATCTTTGAATAATAAAAAAGAAGTTGTGATTCTAATCGGTTCGAATAAATCCAAAGAAAGTGTGGATAAGAATGAGGAGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>503 276 221</canonical_bands>
                <polymorphic_bands>724 276</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTCAAAAACAGCCCTAAATA</pcr_primer_p1>
		<pcr_primer_p2>GCGATTCCAAAAATTACAGTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTCAAAAACAGCCCTAAATAGCCCTAAATAAAGCCTATTTCCTCTTCCCCTCCCCCTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCATCTCTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAAGAGAGTGTTGAATAATACTGTAATTTTTGGAATCGC</canonical_amplicon>
		<polymorphic_amplicon>GGTCAAAAACAGCCCTAAATAGCCCTAAATAAAGCCTATTTCCTCTTCCCCTCCCCCTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCATCTCTCRTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAAGAGAGTGTTGAATAATACTGTAATTTTTGGAATCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23892</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>914071</contig_pos>
        <strand>+</strand>
        <context>CCTTTCGAAA[C/T]AGAGTGTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAA</left_flank>
        <right_flank>AGAGTGTTGAATAATACTGTAATTTTTGGAATCGCTTCTTCGGGGTTATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATTTTTTTGAACTTTTTTGTTTTTTTTTAAAGTCTGGGACGTGGAGCCAACAATTCCGCAAATCAGACACATTTCTTTTTGTTCTCTACATCCAGACTCTCTAATTAGAAATATGCTGGGTAAGTTTGGCTTATTTGAAATAGCCTTTTTAAAATCTTTTTTATCTCAAATTTCTAGGCTGGCCCCGAAAACGGGCCTTTTTTGGGTTTTTTCACCTAGAAATCTGGATTTTAAATCAATTTTCGAATTCTGCTCAAAAAATAAGCCTACACCCTTTTTTCCGGGTCAAAAACAGCCCTAAATAGCCCTAAATAAAGCCTATTTCCTCTTCCCCTCCCCCTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCATCTCTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAAGAGAGTGTTGAATAATACTGTAATTTTTGGAATCGCTTCTTCGGGGTTATCCGTTGAGGCAATAGAAAGATGCATTCTGAATTATATTTCCAGAGTATTTCGTAACAAATCTAATGGTTTTCCTTCTCCTCCTCACCGTGCCAACGTACTGTTGCAAACGGAAGAAAACGTCGGTGTCAAAGAAGAAGCACAAGAAGCGGCGTAAGGAGAAAAAGACGGGGAAGCATTCGACAACTCCTACAACGACAACACCGAATCTTCCATTGACTCCGTTGACACCCCAAACGCCTCAAATGCCAACTCCAGTGATGACCCAGACTCCAAAAATAGCTACAACGGCTACACCTGGCTCCACGGATTCTGCAGAATCTTTGAATAATAAAAAAGAAGTTGTGATTCTAATCGGTTCGAATAAATCCAAAGAAAGTGTGGATAAGAATGAGGAGGAGAAGAAGAGTGATAAGGAGCAAGAGGATTTGGGGGAACTTCTGAGGTTTGGTT</canonical>
            <polymorphic>TGATTTTTTTGAACTTTTTTGTTTTTTTTTAAAGTCTGGGACGTGGAGCCAACAATTCCGCAAATCAGACACATTTCTTTTTGTTCTCTACATCCAGACTCTCTAATTAGAAATATGCTGGGTAAGTTTGGCTTATTTGAAATAGCCTTTTTAAAATCTTTTTTATCTCAAATTTCTAGGCTGGCCCCGAAAACGGGCCTTTTTTGGGTTTTTTCACCTAGAAATCTGGATTTTAAATCAATTTTCGAATTCTGCTCAAAAAATAAGCCTACACCCTTTTTTCCGGGTCAAAAACAGCCCTAAATAGCCCTAAATAAAGCCTATTTCCTCTTCCCCTCCCCCTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCATCTCTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAAYAGAGTGTTGAATAATACTGTAATTTTTGGAATCGCTTCTTCGGGGTTATCCGTTGAGGCAATAGAAAGATGCATTCTGAATTATATTTCCAGAGTATTTCGTAACAAATCTAATGGTTTTCCTTCTCCTCCTCACCGTGCCAACGTACTGTTGCAAACGGAAGAAAACGTCGGTGTCAAAGAAGAAGCACAAGAAGCGGCGTAAGGAGAAAAAGACGGGGAAGCATTCGACAACTCCTACAACGACAACACCGAATCTTCCATTGACTCCGTTGACACCCCAAACGCCTCAAATGCCAACTCCAGTGATGACCCAGACTCCAAAAATAGCTACAACGGCTACACCTGGCTCCACGGATTCTGCAGAATCTTTGAATAATAAAAAAGAAGTTGTGATTCTAATCGGTTCGAATAAATCCAAAGAAAGTGTGGATAAGAATGAGGAGGAGAAGAAGAGTGATAAGGAGCAAGAGGATTTGGGGGAACTTCTGAGGTTTGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTAAATAAAGCCTATTTCCTCT</pcr_primer_p1>
		<pcr_primer_p2>CTATTGCCTCAACGGATAAC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CCTAAATAAAGCCTATTTCCTCTTCCCCTCCCCCTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCATCTCTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAAGAGAGTGTTGAATAATACTGTAATTTTTGGAATCGCTTCTTCGGGGTTATCCGTTGAGGCAATAG</canonical_amplicon>
		<polymorphic_amplicon>CCTAAATAAAGCCTATTTCCTCTTCCCCTCCCCCTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCATCTCTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAAYAGAGTGTTGAATAATACTGTAATTTTTGGAATCGCTTCTTCGGGGTTATCCGTTGAGGCAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23893</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>915007</contig_pos>
        <strand>+</strand>
        <context>TTTTCGGATT[G/T]AAAATAGATC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAAAATTGATTTCCACTCAAAAAATAAGTCTAAAATCTTTTTTTCGGATT</left_flank>
        <right_flank>AAAATAGATCAGAATAAGCCTATTTCCTCTTCCCCTCCCCTTAAAAGTGG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGAGGAGGAGAAGAAGAGTGATAAGGAGCAAGAGGATTTGGGGGAACTTCTGAGGTTTGGTTTATTTAATTTTTGGAAATTTATAATTTTTTATTTAAAATTAAAAAAAAATAATTTTGAAAATTTTCTTTTAAATTTTAAATTTTGTTAAACAAATTTTTGGTCCATTTTTTTCTTTAAAAATCAGAATTTTAAGACCATTCTAAATTAATTTTTATAAATTTAAATTAATAATTTTTAAAATTTAAAAAAAAATAATTTTTTTAATTACAAAATTCCAGATGCCGTGACTATACTCCGGAGAATTTTGCCGAGCTCAAATGGCTTTTCGATTTGTTGGATTAACCTATTTTTCTTTGAATAAAAAATTTGAGTTTTTGAAAATCGTTTTTTTTTCTCGAAAATTCAATTTTCCTGATGATTTATCATTGATTCTTACGTTTTTTTTAAAATTGATTTCCACTCAAAAAATAAGTCTAAAATCTTTTTTTCGGATTTAAAATAGATCAGAATAAGCCTATTTCCTCTTCCCCTCCCCTTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCGTCTTTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTTTTTGTTGCTACTTCATAATCCGTTTTATACTAGTTTTAGGGATTTTTGGAATTTCAAAAATTTCTCAATACTCAAATTTATTCATATATAATA</canonical>
            <polymorphic>AATGAGGAGGAGAAGAAGAGTGATAAGGAGCAAGAGGATTTGGGGGAACTTCTGAGGTTTGGTTTATTTAATTTTTGGAAATTTATAATTTTTTATTTAAAATTAAAAAAAAATAATTTTGAAAATTTTCTTTTAAATTTTAAATTTTGTTAAACAAATTTTTGGTCCATTTTTTTCTTTAAAAATCAGAATTTTAAGACCATTCTAAATTAATTTTTATAAATTTAAATTAATAATTTTTAAAATTTAAAAAAAAATAATTTTTTTAATTACAAAATTCCAGATGCCGTGACTATACTCCGGAGAATTTTGCCGAGCTCAAATGGCTTTTCGATTTGTTGGATTAACCTATTTTTCTTTGAATAAAAAATTTGAGTTTTTGAAAATCGTTTTTTTTTCTCGAAAATTCAATTTTCCTGATGATTTATCATTGATTCTTACGTTTTTTTTAAAATTGATTTCCACTCAAAAAATAAGTCTAAAATCTTTTTTTCGGATTKAAAATAGATCAGAATAAGCCTATTTCCTCTTCCCCTCCCCTTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCGTCTTTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTTTTTGTTGCTACTTCATAATCCGTTTTATACTAGTTTTAGGGATTTTTGGAATTTCAAAAATTTCTCAATACTCAAATTTATTCATATATAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 202 98 50 46 39 36 15 7 7</canonical_bands>
                <polymorphic_bands>550 202 98 46 39 36 15 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>183 154 113 105 78 68 50 42 30 29 29 19 16 15 15 10 10 9 7 7 6 5</canonical_bands>
                <polymorphic_bands>183 154 113 105 92 78 68 30 29 29 19 16 15 15 10 10 9 7 7 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATGATTTATCATTGATTCTTACG</pcr_primer_p1>
		<pcr_primer_p2>CCTTGGTTAACTGGGTTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GATGATTTATCATTGATTCTTACGTTTTTTTTAAAATTGATTTCCACTCAAAAAATAAGTCTAAAATCTTTTTTTCGGATTTAAAATAGATCAGAATAAGCCTATTTCCTCTTCCCCTCCCCTTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCGTCTTTCGTCGGTTTTAACCCAGTTAACCAAGG</canonical_amplicon>
		<polymorphic_amplicon>GATGATTTATCATTGATTCTTACGTTTTTTTTAAAATTGATTTCCACTCAAAAAATAAGTCTAAAATCTTTTTTTCGGATTKAAAATAGATCAGAATAAGCCTATTTCCTCTTCCCCTCCCCTTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCGTCTTTCGTCGGTTTTAACCCAGTTAACCAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23894</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>915151</contig_pos>
        <strand>+</strand>
        <context>CTCGCCGTCT[C/T]TCGTCGGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCGTCT</left_flank>
        <right_flank>TCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGTTAAACAAATTTTTGGTCCATTTTTTTCTTTAAAAATCAGAATTTTAAGACCATTCTAAATTAATTTTTATAAATTTAAATTAATAATTTTTAAAATTTAAAAAAAAATAATTTTTTTAATTACAAAATTCCAGATGCCGTGACTATACTCCGGAGAATTTTGCCGAGCTCAAATGGCTTTTCGATTTGTTGGATTAACCTATTTTTCTTTGAATAAAAAATTTGAGTTTTTGAAAATCGTTTTTTTTTCTCGAAAATTCAATTTTCCTGATGATTTATCATTGATTCTTACGTTTTTTTTAAAATTGATTTCCACTCAAAAAATAAGTCTAAAATCTTTTTTTCGGATTTAAAATAGATCAGAATAAGCCTATTTCCTCTTCCCCTCCCCTTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCGTCTTTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTTTTTGTTGCTACTTCATAATCCGTTTTATACTAGTTTTAGGGATTTTTGGAATTTCAAAAATTTCTCAATACTCAAATTTATTCATATATAATACAAAGAAATCAATCAATTTTGACAACTAAATTTCCCTTGGCTCCACTATTCTCCATAATATCCTTATGAGCCTGTCCAAGCTGCTCCAAACTGTATTCCTTATTGATAATTGGTCGGTGTTCAGTTTCCTTTAAGAAATTCACA</canonical>
            <polymorphic>TTTTGTTAAACAAATTTTTGGTCCATTTTTTTCTTTAAAAATCAGAATTTTAAGACCATTCTAAATTAATTTTTATAAATTTAAATTAATAATTTTTAAAATTTAAAAAAAAATAATTTTTTTAATTACAAAATTCCAGATGCCGTGACTATACTCCGGAGAATTTTGCCGAGCTCAAATGGCTTTTCGATTTGTTGGATTAACCTATTTTTCTTTGAATAAAAAATTTGAGTTTTTGAAAATCGTTTTTTTTTCTCGAAAATTCAATTTTCCTGATGATTTATCATTGATTCTTACGTTTTTTTTAAAATTGATTTCCACTCAAAAAATAAGTCTAAAATCTTTTTTTCGGATTTAAAATAGATCAGAATAAGCCTATTTCCTCTTCCCCTCCCCTTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCGTCTYTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTTTTTGTTGCTACTTCATAATCCGTTTTATACTAGTTTTAGGGATTTTTGGAATTTCAAAAATTTCTCAATACTCAAATTTATTCATATATAATACAAAGAAATCAATCAATTTTGACAACTAAATTTCCCTTGGCTCCACTATTCTCCATAATATCCTTATGAGCCTGTCCAAGCTGCTCCAAACTGTATTCCTTATTGATAATTGGTCGGTGTTCAGTTTCCTTTAAGAAATTCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAGAATAAGCCTATTTCCTCT</pcr_primer_p1>
		<pcr_primer_p2>TTCCAAAAATTATAGTTATTCAACAC</pcr_primer_p2>
		<pcr_amplicon_size>222</pcr_amplicon_size>
		<canonical_amplicon>ATCAGAATAAGCCTATTTCCTCTTCCCCTCCCCTTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCGTCTTTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAA</canonical_amplicon>
		<polymorphic_amplicon>ATCAGAATAAGCCTATTTCCTCTTCCCCTCCCCTTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCGTCTYTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23895</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>915206</contig_pos>
        <strand></strand>
        <context>CCTTTCGAAA[C/T]GAGAGTGTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAA</left_flank>
        <right_flank>GAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATTCTAAATTAATTTTTATAAATTTAAATTAATAATTTTTAAAATTTAAAAAAAAATAATTTTTTTAATTACAAAATTCCAGATGCCGTGACTATACTCCGGAGAATTTTGCCGAGCTCAAATGGCTTTTCGATTTGTTGGATTAACCTATTTTTCTTTGAATAAAAAATTTGAGTTTTTGAAAATCGTTTTTTTTTCTCGAAAATTCAATTTTCCTGATGATTTATCATTGATTCTTACGTTTTTTTTAAAATTGATTTCCACTCAAAAAATAAGTCTAAAATCTTTTTTTCGGATTTAAAATAGATCAGAATAAGCCTATTTCCTCTTCCCCTCCCCTTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCGTCTTTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTTTTTGTTGCTACTTCATAATCCGTTTTATACTAGTTTTAGGGATTTTTGGAATTTCAAAAATTTCTCAATACTCAAATTTATTCATATATAATACAAAGAAATCAATCAATTTTGACAACTAAATTTCCCTTGGCTCCACTATTCTCCATAATATCCTTATGAGCCTGTCCAAGCTGCTCCAAACTGTATTCCTTATTGATAATTGGTCGGTGTTCAGTTTCCTTTAAGAAATTCACAATATTATGTCCAAAATCCGCTAGTTCCGCTTCAGTTGACATGCCCAAAGCGACGC</canonical>
            <polymorphic>CCATTCTAAATTAATTTTTATAAATTTAAATTAATAATTTTTAAAATTTAAAAAAAAATAATTTTTTTAATTACAAAATTCCAGATGCCGTGACTATACTCCGGAGAATTTTGCCGAGCTCAAATGGCTTTTCGATTTGTTGGATTAACCTATTTTTCTTTGAATAAAAAATTTGAGTTTTTGAAAATCGTTTTTTTTTCTCGAAAATTCAATTTTCCTGATGATTTATCATTGATTCTTACGTTTTTTTTAAAATTGATTTCCACTCAAAAAATAAGTCTAAAATCTTTTTTTCGGATTTAAAATAGATCAGAATAAGCCTATTTCCTCTTCCCCTCCCCTTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCGTCTTTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAAYGAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTTTTTGTTGCTACTTCATAATCCGTTTTATACTAGTTTTAGGGATTTTTGGAATTTCAAAAATTTCTCAATACTCAAATTTATTCATATATAATACAAAGAAATCAATCAATTTTGACAACTAAATTTCCCTTGGCTCCACTATTCTCCATAATATCCTTATGAGCCTGTCCAAGCTGCTCCAAACTGTATTCCTTATTGATAATTGGTCGGTGTTCAGTTTCCTTTAAGAAATTCACAATATTATGTCCAAAATCCGCTAGTTCCGCTTCAGTTGACATGCCCAAAGCGACGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAATAAGCCTATTTCCTCTTC</pcr_primer_p1>
		<pcr_primer_p2>TGATAAGAAGAAGAGATTCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>304</pcr_amplicon_size>
		<canonical_amplicon>CAGAATAAGCCTATTTCCTCTTCCCCTCCCCTTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCGTCTTTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCA</canonical_amplicon>
		<polymorphic_amplicon>CAGAATAAGCCTATTTCCTCTTCCCCTCCCCTTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCGTCTTTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAAYGAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23896</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>915237</contig_pos>
        <strand></strand>
        <context>ATTTTTGGAA[G/C]CSCTTCTTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAA</left_flank>
        <right_flank>CGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATAATTTTTAAAATTTAAAAAAAAATAATTTTTTTAATTACAAAATTCCAGATGCCGTGACTATACTCCGGAGAATTTTGCCGAGCTCAAATGGCTTTTCGATTTGTTGGATTAACCTATTTTTCTTTGAATAAAAAATTTGAGTTTTTGAAAATCGTTTTTTTTTCTCGAAAATTCAATTTTCCTGATGATTTATCATTGATTCTTACGTTTTTTTTAAAATTGATTTCCACTCAAAAAATAAGTCTAAAATCTTTTTTTCGGATTTAAAATAGATCAGAATAAGCCTATTTCCTCTTCCCCTCCCCTTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCGTCTTTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTTTTTGTTGCTACTTCATAATCCGTTTTATACTAGTTTTAGGGATTTTTGGAATTTCAAAAATTTCTCAATACTCAAATTTATTCATATATAATACAAAGAAATCAATCAATTTTGACAACTAAATTTCCCTTGGCTCCACTATTCTCCATAATATCCTTATGAGCCTGTCCAAGCTGCTCCAAACTGTATTCCTTATTGATAATTGGTCGGTGTTCAGTTTCCTTTAAGAAATTCACAATATTATGTCCAAAATCCGCTAGTTCCGCTTCAGTTGACATGCCCAAAGCGACGCCTGAAGTTCAAAATTTTCAAAAATTCAAATT</canonical>
            <polymorphic>TAATAATTTTTAAAATTTAAAAAAAAATAATTTTTTTAATTACAAAATTCCAGATGCCGTGACTATACTCCGGAGAATTTTGCCGAGCTCAAATGGCTTTTCGATTTGTTGGATTAACCTATTTTTCTTTGAATAAAAAATTTGAGTTTTTGAAAATCGTTTTTTTTTCTCGAAAATTCAATTTTCCTGATGATTTATCATTGATTCTTACGTTTTTTTTAAAATTGATTTCCACTCAAAAAATAAGTCTAAAATCTTTTTTTCGGATTTAAAATAGATCAGAATAAGCCTATTTCCTCTTCCCCTCCCCTTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCGTCTTTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAASCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTTTTTGTTGCTACTTCATAATCCGTTTTATACTAGTTTTAGGGATTTTTGGAATTTCAAAAATTTCTCAATACTCAAATTTATTCATATATAATACAAAGAAATCAATCAATTTTGACAACTAAATTTCCCTTGGCTCCACTATTCTCCATAATATCCTTATGAGCCTGTCCAAGCTGCTCCAAACTGTATTCCTTATTGATAATTGGTCGGTGTTCAGTTTCCTTTAAGAAATTCACAATATTATGTCCAAAATCCGCTAGTTCCGCTTCAGTTGACATGCCCAAAGCGACGCCTGAAGTTCAAAATTTTCAAAAATTCAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCGCT</site>
                <isoschizomers>
                    <enzyme>AfeI</enzyme>
                    <enzyme>Aor51HI</enzyme>
                    <enzyme>Eco47III</enzyme>
                    <enzyme>FunI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>498 398 102 2</canonical_bands>
                <polymorphic_bands>600 398 2</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAAGGTTAGCATGGATTT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATGGTAGAAACCAATAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTT</canonical_amplicon>
		<polymorphic_amplicon>ACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAASCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23897</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>915239</contig_pos>
        <strand>+</strand>
        <context>TTTTGGAASC[C/G]CTTCTTCGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGC</left_flank>
        <right_flank>CTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAATTTTTAAAATTTAAAAAAAAATAATTTTTTTAATTACAAAATTCCAGATGCCGTGACTATACTCCGGAGAATTTTGCCGAGCTCAAATGGCTTTTCGATTTGTTGGATTAACCTATTTTTCTTTGAATAAAAAATTTGAGTTTTTGAAAATCGTTTTTTTTTCTCGAAAATTCAATTTTCCTGATGATTTATCATTGATTCTTACGTTTTTTTTAAAATTGATTTCCACTCAAAAAATAAGTCTAAAATCTTTTTTTCGGATTTAAAATAGATCAGAATAAGCCTATTTCCTCTTCCCCTCCCCTTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCGTCTTTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTTTTTGTTGCTACTTCATAATCCGTTTTATACTAGTTTTAGGGATTTTTGGAATTTCAAAAATTTCTCAATACTCAAATTTATTCATATATAATACAAAGAAATCAATCAATTTTGACAACTAAATTTCCCTTGGCTCCACTATTCTCCATAATATCCTTATGAGCCTGTCCAAGCTGCTCCAAACTGTATTCCTTATTGATAATTGGTCGGTGTTCAGTTTCCTTTAAGAAATTCACAATATTATGTCCAAAATCCGCTAGTTCCGCTTCAGTTGACATGCCCAAAGCGACGCCTGAAGTTCAAAATTTTCAAAAATTCAAATTTT</canonical>
            <polymorphic>ATAATTTTTAAAATTTAAAAAAAAATAATTTTTTTAATTACAAAATTCCAGATGCCGTGACTATACTCCGGAGAATTTTGCCGAGCTCAAATGGCTTTTCGATTTGTTGGATTAACCTATTTTTCTTTGAATAAAAAATTTGAGTTTTTGAAAATCGTTTTTTTTTCTCGAAAATTCAATTTTCCTGATGATTTATCATTGATTCTTACGTTTTTTTTAAAATTGATTTCCACTCAAAAAATAAGTCTAAAATCTTTTTTTCGGATTTAAAATAGATCAGAATAAGCCTATTTCCTCTTCCCCTCCCCTTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCGTCTTTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGCSCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTTTTTGTTGCTACTTCATAATCCGTTTTATACTAGTTTTAGGGATTTTTGGAATTTCAAAAATTTCTCAATACTCAAATTTATTCATATATAATACAAAGAAATCAATCAATTTTGACAACTAAATTTCCCTTGGCTCCACTATTCTCCATAATATCCTTATGAGCCTGTCCAAGCTGCTCCAAACTGTATTCCTTATTGATAATTGGTCGGTGTTCAGTTTCCTTTAAGAAATTCACAATATTATGTCCAAAATCCGCTAGTTCCGCTTCAGTTGACATGCCCAAAGCGACGCCTGAAGTTCAAAATTTTCAAAAATTCAAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCGCT</site>
                <isoschizomers>
                    <enzyme>AfeI</enzyme>
                    <enzyme>Aor51HI</enzyme>
                    <enzyme>Eco47III</enzyme>
                    <enzyme>FunI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 396 102 2</canonical_bands>
                <polymorphic_bands>602 396 2</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAAGGTTAGCATGGATTT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATGGTAGAAACCAATAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTT</canonical_amplicon>
		<polymorphic_amplicon>ACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGCSCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23898</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>915273</contig_pos>
        <strand>+</strand>
        <context>GCAACAAATA[A/G]TTTTATTCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATA</left_flank>
        <right_flank>TTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATTACAAAATTCCAGATGCCGTGACTATACTCCGGAGAATTTTGCCGAGCTCAAATGGCTTTTCGATTTGTTGGATTAACCTATTTTTCTTTGAATAAAAAATTTGAGTTTTTGAAAATCGTTTTTTTTTCTCGAAAATTCAATTTTCCTGATGATTTATCATTGATTCTTACGTTTTTTTTAAAATTGATTTCCACTCAAAAAATAAGTCTAAAATCTTTTTTTCGGATTTAAAATAGATCAGAATAAGCCTATTTCCTCTTCCCCTCCCCTTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCGTCTTTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTTTTTGTTGCTACTTCATAATCCGTTTTATACTAGTTTTAGGGATTTTTGGAATTTCAAAAATTTCTCAATACTCAAATTTATTCATATATAATACAAAGAAATCAATCAATTTTGACAACTAAATTTCCCTTGGCTCCACTATTCTCCATAATATCCTTATGAGCCTGTCCAAGCTGCTCCAAACTGTATTCCTTATTGATAATTGGTCGGTGTTCAGTTTCCTTTAAGAAATTCACAATATTATGTCCAAAATCCGCTAGTTCCGCTTCAGTTGACATGCCCAAAGCGACGCCTGAAGTTCAAAATTTTCAAAAATTCAAATTTTCAATTAAACTACCAAAAACGGCTCCCTCTGTAAC</canonical>
            <polymorphic>TAATTACAAAATTCCAGATGCCGTGACTATACTCCGGAGAATTTTGCCGAGCTCAAATGGCTTTTCGATTTGTTGGATTAACCTATTTTTCTTTGAATAAAAAATTTGAGTTTTTGAAAATCGTTTTTTTTTCTCGAAAATTCAATTTTCCTGATGATTTATCATTGATTCTTACGTTTTTTTTAAAATTGATTTCCACTCAAAAAATAAGTCTAAAATCTTTTTTTCGGATTTAAAATAGATCAGAATAAGCCTATTTCCTCTTCCCCTCCCCTTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCGTCTTTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATARTTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTTTTTGTTGCTACTTCATAATCCGTTTTATACTAGTTTTAGGGATTTTTGGAATTTCAAAAATTTCTCAATACTCAAATTTATTCATATATAATACAAAGAAATCAATCAATTTTGACAACTAAATTTCCCTTGGCTCCACTATTCTCCATAATATCCTTATGAGCCTGTCCAAGCTGCTCCAAACTGTATTCCTTATTGATAATTGGTCGGTGTTCAGTTTCCTTTAAGAAATTCACAATATTATGTCCAAAATCCGCTAGTTCCGCTTCAGTTGACATGCCCAAAGCGACGCCTGAAGTTCAAAATTTTCAAAAATTCAAATTTTCAATTAAACTACCAAAAACGGCTCCCTCTGTAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>266 122 79 74 70 63 46 43 36 33 33 30 29 16 14 10 9 8 7 6 5 1</canonical_bands>
                <polymorphic_bands>266 122 116 79 74 63 43 36 33 33 30 29 16 14 10 9 8 7 6 5 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAAGGTTAGCATGGATTT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATGGTAGAAACCAATAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTT</canonical_amplicon>
		<polymorphic_amplicon>ACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATARTTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23899</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>915286</contig_pos>
        <strand>+</strand>
        <context>TTATTCAAAT[A/G]AAAAGATTCR</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAAT</left_flank>
        <right_flank>AAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGATGCCGTGACTATACTCCGGAGAATTTTGCCGAGCTCAAATGGCTTTTCGATTTGTTGGATTAACCTATTTTTCTTTGAATAAAAAATTTGAGTTTTTGAAAATCGTTTTTTTTTCTCGAAAATTCAATTTTCCTGATGATTTATCATTGATTCTTACGTTTTTTTTAAAATTGATTTCCACTCAAAAAATAAGTCTAAAATCTTTTTTTCGGATTTAAAATAGATCAGAATAAGCCTATTTCCTCTTCCCCTCCCCTTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCGTCTTTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTTTTTGTTGCTACTTCATAATCCGTTTTATACTAGTTTTAGGGATTTTTGGAATTTCAAAAATTTCTCAATACTCAAATTTATTCATATATAATACAAAGAAATCAATCAATTTTGACAACTAAATTTCCCTTGGCTCCACTATTCTCCATAATATCCTTATGAGCCTGTCCAAGCTGCTCCAAACTGTATTCCTTATTGATAATTGGTCGGTGTTCAGTTTCCTTTAAGAAATTCACAATATTATGTCCAAAATCCGCTAGTTCCGCTTCAGTTGACATGCCCAAAGCGACGCCTGAAGTTCAAAATTTTCAAAAATTCAAATTTTCAATTAAACTACCAAAAACGGCTCCCTCTGTAACCATGAGTTGTCTT</canonical>
            <polymorphic>CCAGATGCCGTGACTATACTCCGGAGAATTTTGCCGAGCTCAAATGGCTTTTCGATTTGTTGGATTAACCTATTTTTCTTTGAATAAAAAATTTGAGTTTTTGAAAATCGTTTTTTTTTCTCGAAAATTCAATTTTCCTGATGATTTATCATTGATTCTTACGTTTTTTTTAAAATTGATTTCCACTCAAAAAATAAGTCTAAAATCTTTTTTTCGGATTTAAAATAGATCAGAATAAGCCTATTTCCTCTTCCCCTCCCCTTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCGTCTTTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATRAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTTTTTGTTGCTACTTCATAATCCGTTTTATACTAGTTTTAGGGATTTTTGGAATTTCAAAAATTTCTCAATACTCAAATTTATTCATATATAATACAAAGAAATCAATCAATTTTGACAACTAAATTTCCCTTGGCTCCACTATTCTCCATAATATCCTTATGAGCCTGTCCAAGCTGCTCCAAACTGTATTCCTTATTGATAATTGGTCGGTGTTCAGTTTCCTTTAAGAAATTCACAATATTATGTCCAAAATCCGCTAGTTCCGCTTCAGTTGACATGCCCAAAGCGACGCCTGAAGTTCAAAATTTTCAAAAATTCAAATTTTCAATTAAACTACCAAAAACGGCTCCCTCTGTAACCATGAGTTGTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>480 452 52 16</canonical_bands>
                <polymorphic_bands>480 452 68</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAAGGTTAGCATGGATTT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATGGTAGAAACCAATAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTT</canonical_amplicon>
		<polymorphic_amplicon>ACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATRAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23900</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>915296</contig_pos>
        <strand>+</strand>
        <context>RAAAAGATTC[A/G]TTTCAGAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTC</left_flank>
        <right_flank>TTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACTATACTCCGGAGAATTTTGCCGAGCTCAAATGGCTTTTCGATTTGTTGGATTAACCTATTTTTCTTTGAATAAAAAATTTGAGTTTTTGAAAATCGTTTTTTTTTCTCGAAAATTCAATTTTCCTGATGATTTATCATTGATTCTTACGTTTTTTTTAAAATTGATTTCCACTCAAAAAATAAGTCTAAAATCTTTTTTTCGGATTTAAAATAGATCAGAATAAGCCTATTTCCTCTTCCCCTCCCCTTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCGTCTTTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTTTTTGTTGCTACTTCATAATCCGTTTTATACTAGTTTTAGGGATTTTTGGAATTTCAAAAATTTCTCAATACTCAAATTTATTCATATATAATACAAAGAAATCAATCAATTTTGACAACTAAATTTCCCTTGGCTCCACTATTCTCCATAATATCCTTATGAGCCTGTCCAAGCTGCTCCAAACTGTATTCCTTATTGATAATTGGTCGGTGTTCAGTTTCCTTTAAGAAATTCACAATATTATGTCCAAAATCCGCTAGTTCCGCTTCAGTTGACATGCCCAAAGCGACGCCTGAAGTTCAAAATTTTCAAAAATTCAAATTTTCAATTAAACTACCAAAAACGGCTCCCTCTGTAACCATGAGTTGTCTTGCGTTGATTG</canonical>
            <polymorphic>TGACTATACTCCGGAGAATTTTGCCGAGCTCAAATGGCTTTTCGATTTGTTGGATTAACCTATTTTTCTTTGAATAAAAAATTTGAGTTTTTGAAAATCGTTTTTTTTTCTCGAAAATTCAATTTTCCTGATGATTTATCATTGATTCTTACGTTTTTTTTAAAATTGATTTCCACTCAAAAAATAAGTCTAAAATCTTTTTTTCGGATTTAAAATAGATCAGAATAAGCCTATTTCCTCTTCCCCTCCCCTTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCGTCTTTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTCRTTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTTTTTGTTGCTACTTCATAATCCGTTTTATACTAGTTTTAGGGATTTTTGGAATTTCAAAAATTTCTCAATACTCAAATTTATTCATATATAATACAAAGAAATCAATCAATTTTGACAACTAAATTTCCCTTGGCTCCACTATTCTCCATAATATCCTTATGAGCCTGTCCAAGCTGCTCCAAACTGTATTCCTTATTGATAATTGGTCGGTGTTCAGTTTCCTTTAAGAAATTCACAATATTATGTCCAAAATCCGCTAGTTCCGCTTCAGTTGACATGCCCAAAGCGACGCCTGAAGTTCAAAATTTTCAAAAATTCAAATTTTCAATTAAACTACCAAAAACGGCTCCCTCTGTAACCATGAGTTGTCTTGCGTTGATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCAAGGTTAGCATGGATTT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATGGTAGAAACCAATAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTT</canonical_amplicon>
		<polymorphic_amplicon>ACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTCRTTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23901</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>915332</contig_pos>
        <strand>+</strand>
        <context>CATTAAAAAG[A/G]TCCTGATTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAG</left_flank>
        <right_flank>TCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTTTTCGATTTGTTGGATTAACCTATTTTTCTTTGAATAAAAAATTTGAGTTTTTGAAAATCGTTTTTTTTTCTCGAAAATTCAATTTTCCTGATGATTTATCATTGATTCTTACGTTTTTTTTAAAATTGATTTCCACTCAAAAAATAAGTCTAAAATCTTTTTTTCGGATTTAAAATAGATCAGAATAAGCCTATTTCCTCTTCCCCTCCCCTTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCGTCTTTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTTTTTGTTGCTACTTCATAATCCGTTTTATACTAGTTTTAGGGATTTTTGGAATTTCAAAAATTTCTCAATACTCAAATTTATTCATATATAATACAAAGAAATCAATCAATTTTGACAACTAAATTTCCCTTGGCTCCACTATTCTCCATAATATCCTTATGAGCCTGTCCAAGCTGCTCCAAACTGTATTCCTTATTGATAATTGGTCGGTGTTCAGTTTCCTTTAAGAAATTCACAATATTATGTCCAAAATCCGCTAGTTCCGCTTCAGTTGACATGCCCAAAGCGACGCCTGAAGTTCAAAATTTTCAAAAATTCAAATTTTCAATTAAACTACCAAAAACGGCTCCCTCTGTAACCATGAGTTGTCTTGCGTTGATTGTGGTCTCCGATCGATTTCCAATCACTGCCACTTTGC</canonical>
            <polymorphic>GCTTTTCGATTTGTTGGATTAACCTATTTTTCTTTGAATAAAAAATTTGAGTTTTTGAAAATCGTTTTTTTTTCTCGAAAATTCAATTTTCCTGATGATTTATCATTGATTCTTACGTTTTTTTTAAAATTGATTTCCACTCAAAAAATAAGTCTAAAATCTTTTTTTCGGATTTAAAATAGATCAGAATAAGCCTATTTCCTCTTCCCCTCCCCTTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCGTCTTTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGRTCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTTTTTGTTGCTACTTCATAATCCGTTTTATACTAGTTTTAGGGATTTTTGGAATTTCAAAAATTTCTCAATACTCAAATTTATTCATATATAATACAAAGAAATCAATCAATTTTGACAACTAAATTTCCCTTGGCTCCACTATTCTCCATAATATCCTTATGAGCCTGTCCAAGCTGCTCCAAACTGTATTCCTTATTGATAATTGGTCGGTGTTCAGTTTCCTTTAAGAAATTCACAATATTATGTCCAAAATCCGCTAGTTCCGCTTCAGTTGACATGCCCAAAGCGACGCCTGAAGTTCAAAATTTTCAAAAATTCAAATTTTCAATTAAACTACCAAAAACGGCTCCCTCTGTAACCATGAGTTGTCTTGCGTTGATTGTGGTCTCCGATCGATTTCCAATCACTGCCACTTTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>474 317 181 28</canonical_bands>
                <polymorphic_bands>791 181 28</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAAGGTTAGCATGGATTT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATGGTAGAAACCAATAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTT</canonical_amplicon>
		<polymorphic_amplicon>ACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGRTCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23902</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>915373</contig_pos>
        <strand>+</strand>
        <context>GCAAAATGCA[A/G]CTCTCCATCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCA</left_flank>
        <right_flank>CTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTTTTTGTTGCT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTTGAGTTTTTGAAAATCGTTTTTTTTTCTCGAAAATTCAATTTTCCTGATGATTTATCATTGATTCTTACGTTTTTTTTAAAATTGATTTCCACTCAAAAAATAAGTCTAAAATCTTTTTTTCGGATTTAAAATAGATCAGAATAAGCCTATTTCCTCTTCCCCTCCCCTTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCGTCTTTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTTTTTGTTGCTACTTCATAATCCGTTTTATACTAGTTTTAGGGATTTTTGGAATTTCAAAAATTTCTCAATACTCAAATTTATTCATATATAATACAAAGAAATCAATCAATTTTGACAACTAAATTTCCCTTGGCTCCACTATTCTCCATAATATCCTTATGAGCCTGTCCAAGCTGCTCCAAACTGTATTCCTTATTGATAATTGGTCGGTGTTCAGTTTCCTTTAAGAAATTCACAATATTATGTCCAAAATCCGCTAGTTCCGCTTCAGTTGACATGCCCAAAGCGACGCCTGAAGTTCAAAATTTTCAAAAATTCAAATTTTCAATTAAACTACCAAAAACGGCTCCCTCTGTAACCATGAGTTGTCTTGCGTTGATTGTGGTCTCCGATCGATTTCCAATCACTGCCACTTTGCCACGTGGCGCCAGTAGACCCAAGTCGGTGTTGAGGTTCGTA</canonical>
            <polymorphic>AAAATTTGAGTTTTTGAAAATCGTTTTTTTTTCTCGAAAATTCAATTTTCCTGATGATTTATCATTGATTCTTACGTTTTTTTTAAAATTGATTTCCACTCAAAAAATAAGTCTAAAATCTTTTTTTCGGATTTAAAATAGATCAGAATAAGCCTATTTCCTCTTCCCCTCCCCTTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCGTCTTTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCARCTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTTTTTGTTGCTACTTCATAATCCGTTTTATACTAGTTTTAGGGATTTTTGGAATTTCAAAAATTTCTCAATACTCAAATTTATTCATATATAATACAAAGAAATCAATCAATTTTGACAACTAAATTTCCCTTGGCTCCACTATTCTCCATAATATCCTTATGAGCCTGTCCAAGCTGCTCCAAACTGTATTCCTTATTGATAATTGGTCGGTGTTCAGTTTCCTTTAAGAAATTCACAATATTATGTCCAAAATCCGCTAGTTCCGCTTCAGTTGACATGCCCAAAGCGACGCCTGAAGTTCAAAATTTTCAAAAATTCAAATTTTCAATTAAACTACCAAAAACGGCTCCCTCTGTAACCATGAGTTGTCTTGCGTTGATTGTGGTCTCCGATCGATTTCCAATCACTGCCACTTTGCCACGTGGCGCCAGTAGACCCAAGTCGGTGTTGAGGTTCGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAATCTCTTCTTCTTATCA</pcr_primer_p1>
		<pcr_primer_p2>AAGGGAAATTTAGTTGTCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTTTTTGTTGCTACTTCATAATCCGTTTTATACTAGTTTTAGGGATTTTTGGAATTTCAAAAATTTCTCAATACTCAAATTTATTCATATATAATACAAAGAAATCAATCAATTTTGACAACTAAATTTCCCTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCARCTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTTTTTGTTGCTACTTCATAATCCGTTTTATACTAGTTTTAGGGATTTTTGGAATTTCAAAAATTTCTCAATACTCAAATTTATTCATATATAATACAAAGAAATCAATCAATTTTGACAACTAAATTTCCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23903</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>915469</contig_pos>
        <strand>+</strand>
        <context>TTTGGAATTT[A/C]AAAAATTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGCTACTTCATAATCCGTTTTATACTAGTTTTAGGGATTTTTGGAATTT</left_flank>
        <right_flank>AAAAATTTCTCAATACTCAAATTTATTCATATATAATACAAAGAAATCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTCAAAAAATAAGTCTAAAATCTTTTTTTCGGATTTAAAATAGATCAGAATAAGCCTATTTCCTCTTCCCCTCCCCTTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCGTCTTTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTTTTTGTTGCTACTTCATAATCCGTTTTATACTAGTTTTAGGGATTTTTGGAATTTCAAAAATTTCTCAATACTCAAATTTATTCATATATAATACAAAGAAATCAATCAATTTTGACAACTAAATTTCCCTTGGCTCCACTATTCTCCATAATATCCTTATGAGCCTGTCCAAGCTGCTCCAAACTGTATTCCTTATTGATAATTGGTCGGTGTTCAGTTTCCTTTAAGAAATTCACAATATTATGTCCAAAATCCGCTAGTTCCGCTTCAGTTGACATGCCCAAAGCGACGCCTGAAGTTCAAAATTTTCAAAAATTCAAATTTTCAATTAAACTACCAAAAACGGCTCCCTCTGTAACCATGAGTTGTCTTGCGTTGATTGTGGTCTCCGATCGATTTCCAATCACTGCCACTTTGCCACGTGGCGCCAGTAGACCCAAGTCGGTGTTGAGGTTCGTATGGGCGGCCATTTCAAAGATGTAATTGAATCCGCCGGGGTAGTCGTCTTTCATTTTCGCCACGTAGCCAGTTTCAGAGTGATTGTAGACATGTTTG</canonical>
            <polymorphic>CACTCAAAAAATAAGTCTAAAATCTTTTTTTCGGATTTAAAATAGATCAGAATAAGCCTATTTCCTCTTCCCCTCCCCTTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGGGGAAGGTATAGGCGCGCCGCTCGCCGTCTTTCGTCGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAACTATAATTTTTGGAAGCGCTTCTTCGGGGTTATCCGTTGAGGCAACAAATAATTTTATTCAAATGAAAAGATTCATTTCAGAATCTCTTCTTCTTATCAGCATTAAAAAGATCCTGATTCAATTCAGCCAATGTTTTTTCTGCAAAATGCAACTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTTTTTGTTGCTACTTCATAATCCGTTTTATACTAGTTTTAGGGATTTTTGGAATTTMAAAAATTTCTCAATACTCAAATTTATTCATATATAATACAAAGAAATCAATCAATTTTGACAACTAAATTTCCCTTGGCTCCACTATTCTCCATAATATCCTTATGAGCCTGTCCAAGCTGCTCCAAACTGTATTCCTTATTGATAATTGGTCGGTGTTCAGTTTCCTTTAAGAAATTCACAATATTATGTCCAAAATCCGCTAGTTCCGCTTCAGTTGACATGCCCAAAGCGACGCCTGAAGTTCAAAATTTTCAAAAATTCAAATTTTCAATTAAACTACCAAAAACGGCTCCCTCTGTAACCATGAGTTGTCTTGCGTTGATTGTGGTCTCCGATCGATTTCCAATCACTGCCACTTTGCCACGTGGCGCCAGTAGACCCAAGTCGGTGTTGAGGTTCGTATGGGCGGCCATTTCAAAGATGTAATTGAATCCGCCGGGGTAGTCGTCTTTCATTTTCGCCACGTAGCCAGTTTCAGAGTGATTGTAGACATGTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTCCATCAAATGAACTCTTTA</pcr_primer_p1>
		<pcr_primer_p2>CGACCAATTATCAATAAGGAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTTTTTGTTGCTACTTCATAATCCGTTTTATACTAGTTTTAGGGATTTTTGGAATTTCAAAAATTTCTCAATACTCAAATTTATTCATATATAATACAAAGAAATCAATCAATTTTGACAACTAAATTTCCCTTGGCTCCACTATTCTCCATAATATCCTTATGAGCCTGTCCAAGCTGCTCCAAACTGTATTCCTTATTGATAATTGGTCG</canonical_amplicon>
		<polymorphic_amplicon>CTCTCCATCAAATGAACTCTTTATTGGTTTCTACCATTTTTTTTGTTGCTACTTCATAATCCGTTTTATACTAGTTTTAGGGATTTTTGGAATTTMAAAAATTTCTCAATACTCAAATTTATTCATATATAATACAAAGAAATCAATCAATTTTGACAACTAAATTTCCCTTGGCTCCACTATTCTCCATAATATCCTTATGAGCCTGTCCAAGCTGCTCCAAACTGTATTCCTTATTGATAATTGGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23904</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>916992</contig_pos>
        <strand></strand>
        <context>taagttttac[G/T]gaggctttga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGCCAAAAATTCATGAAAAACTGATGAAAATGAAATTTTTTAAGTTTTAC</left_flank>
        <right_flank>GAGGCTTTGAAACTACAAACTACAAAAACTTCTAAGCCTCAGTAAACCTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGCCTCAGTAAACATTTAAAATCGAGATAATGCGTTTTTAAATGTTTACTGAGGCTCAGGAATTTTCGTAGTTTGTAGCCTCTAAACTTCTGTAAGCGCTCCTTACTTTTACTGAGGCTAAGCGACTACAAACTACAGATAATTACTAAACCTCAGTAAAAACTAAAATCAATGTATTTCAGCTCGTTTTCATCCGTTTTTAACGATTTCTAGCTCAAAATTTCTAGAATTTTTACAGTATTAAAAAAAAATATTTTTGTTTTCAAATTCAAGCGACTACAAACTACAGATGATTACTAAGCCTCAGTAAAAAAAAATACTTGAAAAGCTTTTATCGTTTTCCTTTTTTTTTGTGATTTTTGGATAATGCTTTATGAATTTTTTTGCCAAAAATCGTTTACAGGAAAAAACAGCAAAATTTCTCTTTTAGCGAATTCTTGCATTTCCAGCCAAAAATTCATGAAAAACTGATGAAAATGAAATTTTTTAAGTTTTACGGAGGCTTTGAAACTACAAACTACAAAAACTTCTAAGCCTCAGTAAACCTTTAAAGCTCGGTTTCGGCTAGAAATTTTGGAATTTTTTTTCAGAAAATCCATTTTTATTTTCCGAACCATAACATCGCTCACCTTGGCGCCAGCCAAATGAAACAGTGCTCTGTACGCTGTCATATATGGCACGCCCAACGACGCGCCTTCCGAGTAGCTAACACCATCTGGCAGTGGAAACGGGCGGTTCACGACGTTGTACTCTCCGGCACTTCCACTTTCCATTCCGTACCAAACTCTGTCGCCAGCCTTGACATTTCTCACTGCGTCGCCCACTAGCTCAACGATTCCGGCTCCGTCTTTTCCTGGCGAATATGGGAGCGTTGGGAGTTTGGCGTATTGGCCGGCACGGATGTAGGTGTCGACCGGATTGATTCCAGAGGCATGATTGCGGACGAGCACCTGGAAAATTCTCAATTTTTAATTTTAAAATTCTGCAAGAAATTCTAG</canonical>
            <polymorphic>TTAGCCTCAGTAAACATTTAAAATCGAGATAATGCGTTTTTAAATGTTTACTGAGGCTCAGGAATTTTCGTAGTTTGTAGCCTCTAAACTTCTGTAAGCGCTCCTTACTTTTACTGAGGCTAAGCGACTACAAACTACAGATAATTACTAAACCTCAGTAAAAACTAAAATCAATGTATTTCAGCTCGTTTTCATCCGTTTTTAACGATTTCTAGCTCAAAATTTCTAGAATTTTTACAGTATTAAAAAAAAATATTTTTGTTTTCAAATTCAAGCGACTACAAACTACAGATGATTACTAAGCCTCAGTAAAAAAAAATACTTGAAAAGCTTTTATCGTTTTCCTTTTTTTTTGTGATTTTTGGATAATGCTTTATGAATTTTTTTGCCAAAAATCGTTTACAGGAAAAAACAGCAAAATTTCTCTTTTAGCGAATTCTTGCATTTCCAGCCAAAAATTCATGAAAAACTGATGAAAATGAAATTTTTTAAGTTTTACKGAGGCTTTGAAACTACAAACTACAAAAACTTCTAAGCCTCAGTAAACCTTTAAAGCTCGGTTTCGGCTAGAAATTTTGGAATTTTTTTTCAGAAAATCCATTTTTATTTTCCGAACCATAACATCGCTCACCTTGGCGCCAGCCAAATGAAACAGTGCTCTGTACGCTGTCATATATGGCACGCCCAACGACGCGCCTTCCGAGTAGCTAACACCATCTGGCAGTGGAAACGGGCGGTTCACGACGTTGTACTCTCCGGCACTTCCACTTTCCATTCCGTACCAAACTCTGTCGCCAGCCTTGACATTTCTCACTGCGTCGCCCACTAGCTCAACGATTCCGGCTCCGTCTTTTCCTGGCGAATATGGGAGCGTTGGGAGTTTGGCGTATTGGCCGGCACGGATGTAGGTGTCGACCGGATTGATTCCAGAGGCATGATTGCGGACGAGCACCTGGAAAATTCTCAATTTTTAATTTTAAAATTCTGCAAGAAATTCTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTCTCTTTTAGCGAATTCTT</pcr_primer_p1>
		<pcr_primer_p2>GTACAGAGCACTGTTTCATTTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATTTCTCTTTTAGCGAATTCTTGCATTTCCAGCCAAAAATTCATGAAAAACTGATGAAAATGAAATTTTTTAAGTTTTACGGAGGCTTTGAAACTACAAACTACAAAAACTTCTAAGCCTCAGTAAACCTTTAAAGCTCGGTTTCGGCTAGAAATTTTGGAATTTTTTTTCAGAAAATCCATTTTTATTTTCCGAACCATAACATCGCTCACCTTGGCGCCAGCCAAATGAAACAGTGCTCTGTAC</canonical_amplicon>
		<polymorphic_amplicon>AATTTCTCTTTTAGCGAATTCTTGCATTTCCAGCCAAAAATTCATGAAAAACTGATGAAAATGAAATTTTTTAAGTTTTACKGAGGCTTTGAAACTACAAACTACAAAAACTTCTAAGCCTCAGTAAACCTTTAAAGCTCGGTTTCGGCTAGAAATTTTGGAATTTTTTTTCAGAAAATCCATTTTTATTTTCCGAACCATAACATCGCTCACCTTGGCGCCAGCCAAATGAAACAGTGCTCTGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23905</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>925957</contig_pos>
        <strand>+</strand>
        <context>CACTTTTTTT[C/T]YTTTGATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTCATTGAAAAAACAACACCAAAGTTGACCCGAAATTGCACTTTTTTT</left_flank>
        <right_flank>TTTTGATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATTTCTGAGCTCATTTTCAACCTAGAATTCTTCGAATTGCTCTCCAAAAGTGCACTTTTTCGATAATTTATATTCTTTTAACTCATTTTCAATCGAAAATCTTGAAATTTCTTTGAAAAAACCACCAAATGTCACCCAAAATCCTTCAAATTGCTCTCCAAATTCTCCTAATTTAGGCTTGAAAATGGGGAATTTGACGATTTTTGGTTGAAAATGGACCCCGAATTTCGATTTTTGGCTAATTTGCGCATTTCTAGGCTCATTTTCAACCCAAAATTGCTCCAAAAATGCACTTTTCCAGATTTCCAGCATATTTTGATTTTTTCGCTTTCTCGAAAATGGGAAATTCGAGCGTTTCTAGGCTCATTTTCTCAAAATTCCTCTTAAAAATTGAACATTTTCGACAATTTATGTTTTTTTGGTTAATTTTCAATCGAAAATCTTTGAATTTCATTGAAAAAACAACACCAAAGTTGACCCGAAATTGCACTTTTTTTTTTTTGATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTTTGAAGATTTTTGGGTTGAAAATTGAGCCAAAATTACTTTTTTTGAGCATTTCTAAGCTCATTTTTCAGCCCAAAACCCTTCAAATTTTGAATAATTTTCACTTTTTGGCTCATTTTCTATCAAAAATCTTTAGATTTGAAAAAAAACCACCAAAATTACCCCCCCCCCCCCGAATTTTCAAAAATTTCGCTGGAAAAATAGGAAATTTGAAGATTTTTGAGTTGAAAATTAAGCCAAAATTGCTGTTTTGTCTAATTTGAGCACATTTCTTTGCTCATTTTTTAGCCCAAAATCCTTTAAATTCGGCTTGAAAAGTGCACTTTTTAGATGATTTTTGAAGATTTTGGGTTGAAAACTAGGCTAATATTCTGTTGAAACTACCAAAATTAACCCGAAAACCCTTCAAATTCATCTCGATATTCTCCAAATTTTGGCTCGAAATTAAGGAG</canonical>
            <polymorphic>GCATTTCTGAGCTCATTTTCAACCTAGAATTCTTCGAATTGCTCTCCAAAAGTGCACTTTTTCGATAATTTATATTCTTTTAACTCATTTTCAATCGAAAATCTTGAAATTTCTTTGAAAAAACCACCAAATGTCACCCAAAATCCTTCAAATTGCTCTCCAAATTCTCCTAATTTAGGCTTGAAAATGGGGAATTTGACGATTTTTGGTTGAAAATGGACCCCGAATTTCGATTTTTGGCTAATTTGCGCATTTCTAGGCTCATTTTCAACCCAAAATTGCTCCAAAAATGCACTTTTCCAGATTTCCAGCATATTTTGATTTTTTCGCTTTCTCGAAAATGGGAAATTCGAGCGTTTCTAGGCTCATTTTCTCAAAATTCCTCTTAAAAATTGAACATTTTCGACAATTTATGTTTTTTTGGTTAATTTTCAATCGAAAATCTTTGAATTTCATTGAAAAAACAACACCAAAGTTGACCCGAAATTGCACTTTTTTTYTTTTGATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTTTGAAGATTTTTGGGTTGAAAATTGAGCCAAAATTACTTTTTTTGAGCATTTCTAAGCTCATTTTTCAGCCCAAAACCCTTCAAATTTTGAATAATTTTCACTTTTTGGCTCATTTTCTATCAAAAATCTTTAGATTTGAAAAAAAACCACCAAAATTACCCCCCCCCCCCCGAATTTTCAAAAATTTCGCTGGAAAAATAGGAAATTTGAAGATTTTTGAGTTGAAAATTAAGCCAAAATTGCTGTTTTGTCTAATTTGAGCACATTTCTTTGCTCATTTTTTAGCCCAAAATCCTTTAAATTCGGCTTGAAAAGTGCACTTTTTAGATGATTTTTGAAGATTTTGGGTTGAAAACTAGGCTAATATTCTGTTGAAACTACCAAAATTAACCCGAAAACCCTTCAAATTCATCTCGATATTCTCCAAATTTTGGCTCGAAATTAAGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGAAAATCTTTGAATTTCATT</pcr_primer_p1>
		<pcr_primer_p2>ATAGAAAATGAGCCAAAAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TCGAAAATCTTTGAATTTCATTGAAAAAACAACACCAAAGTTGACCCGAAATTGCACTTTTTTTTTTTTGATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTTTGAAGATTTTTGGGTTGAAAATTGAGCCAAAATTACTTTTTTTGAGCATTTCTAAGCTCATTTTTCAGCCCAAAACCCTTCAAATTTTGAATAATTTTCACTTTTTGGCTCATTTTCTAT</canonical_amplicon>
		<polymorphic_amplicon>TCGAAAATCTTTGAATTTCATTGAAAAAACAACACCAAAGTTGACCCGAAATTGCACTTTTTTTYTTTTGATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTTTGAAGATTTTTGGGTTGAAAATTGAGCCAAAATTACTTTTTTTGAGCATTTCTAAGCTCATTTTTCAGCCCAAAACCCTTCAAATTTTGAATAATTTTCACTTTTTGGCTCATTTTCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23906</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>925958</contig_pos>
        <strand>+</strand>
        <context>ACTTTTTTTY[C/T]TTTGATTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCATTGAAAAAACAACACCAAAGTTGACCCGAAATTGCACTTTTTTTT</left_flank>
        <right_flank>TTTGATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTCTGAGCTCATTTTCAACCTAGAATTCTTCGAATTGCTCTCCAAAAGTGCACTTTTTCGATAATTTATATTCTTTTAACTCATTTTCAATCGAAAATCTTGAAATTTCTTTGAAAAAACCACCAAATGTCACCCAAAATCCTTCAAATTGCTCTCCAAATTCTCCTAATTTAGGCTTGAAAATGGGGAATTTGACGATTTTTGGTTGAAAATGGACCCCGAATTTCGATTTTTGGCTAATTTGCGCATTTCTAGGCTCATTTTCAACCCAAAATTGCTCCAAAAATGCACTTTTCCAGATTTCCAGCATATTTTGATTTTTTCGCTTTCTCGAAAATGGGAAATTCGAGCGTTTCTAGGCTCATTTTCTCAAAATTCCTCTTAAAAATTGAACATTTTCGACAATTTATGTTTTTTTGGTTAATTTTCAATCGAAAATCTTTGAATTTCATTGAAAAAACAACACCAAAGTTGACCCGAAATTGCACTTTTTTTTTTTTGATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTTTGAAGATTTTTGGGTTGAAAATTGAGCCAAAATTACTTTTTTTGAGCATTTCTAAGCTCATTTTTCAGCCCAAAACCCTTCAAATTTTGAATAATTTTCACTTTTTGGCTCATTTTCTATCAAAAATCTTTAGATTTGAAAAAAAACCACCAAAATTACCCCCCCCCCCCCGAATTTTCAAAAATTTCGCTGGAAAAATAGGAAATTTGAAGATTTTTGAGTTGAAAATTAAGCCAAAATTGCTGTTTTGTCTAATTTGAGCACATTTCTTTGCTCATTTTTTAGCCCAAAATCCTTTAAATTCGGCTTGAAAAGTGCACTTTTTAGATGATTTTTGAAGATTTTGGGTTGAAAACTAGGCTAATATTCTGTTGAAACTACCAAAATTAACCCGAAAACCCTTCAAATTCATCTCGATATTCTCCAAATTTTGGCTCGAAATTAAGGAGT</canonical>
            <polymorphic>CATTTCTGAGCTCATTTTCAACCTAGAATTCTTCGAATTGCTCTCCAAAAGTGCACTTTTTCGATAATTTATATTCTTTTAACTCATTTTCAATCGAAAATCTTGAAATTTCTTTGAAAAAACCACCAAATGTCACCCAAAATCCTTCAAATTGCTCTCCAAATTCTCCTAATTTAGGCTTGAAAATGGGGAATTTGACGATTTTTGGTTGAAAATGGACCCCGAATTTCGATTTTTGGCTAATTTGCGCATTTCTAGGCTCATTTTCAACCCAAAATTGCTCCAAAAATGCACTTTTCCAGATTTCCAGCATATTTTGATTTTTTCGCTTTCTCGAAAATGGGAAATTCGAGCGTTTCTAGGCTCATTTTCTCAAAATTCCTCTTAAAAATTGAACATTTTCGACAATTTATGTTTTTTTGGTTAATTTTCAATCGAAAATCTTTGAATTTCATTGAAAAAACAACACCAAAGTTGACCCGAAATTGCACTTTTTTTTYTTTGATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTTTGAAGATTTTTGGGTTGAAAATTGAGCCAAAATTACTTTTTTTGAGCATTTCTAAGCTCATTTTTCAGCCCAAAACCCTTCAAATTTTGAATAATTTTCACTTTTTGGCTCATTTTCTATCAAAAATCTTTAGATTTGAAAAAAAACCACCAAAATTACCCCCCCCCCCCCGAATTTTCAAAAATTTCGCTGGAAAAATAGGAAATTTGAAGATTTTTGAGTTGAAAATTAAGCCAAAATTGCTGTTTTGTCTAATTTGAGCACATTTCTTTGCTCATTTTTTAGCCCAAAATCCTTTAAATTCGGCTTGAAAAGTGCACTTTTTAGATGATTTTTGAAGATTTTGGGTTGAAAACTAGGCTAATATTCTGTTGAAACTACCAAAATTAACCCGAAAACCCTTCAAATTCATCTCGATATTCTCCAAATTTTGGCTCGAAATTAAGGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGAAAATCTTTGAATTTCATT</pcr_primer_p1>
		<pcr_primer_p2>ATAGAAAATGAGCCAAAAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TCGAAAATCTTTGAATTTCATTGAAAAAACAACACCAAAGTTGACCCGAAATTGCACTTTTTTTTTTTTGATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTTTGAAGATTTTTGGGTTGAAAATTGAGCCAAAATTACTTTTTTTGAGCATTTCTAAGCTCATTTTTCAGCCCAAAACCCTTCAAATTTTGAATAATTTTCACTTTTTGGCTCATTTTCTAT</canonical_amplicon>
		<polymorphic_amplicon>TCGAAAATCTTTGAATTTCATTGAAAAAACAACACCAAAGTTGACCCGAAATTGCACTTTTTTTTYTTTGATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTTTGAAGATTTTTGGGTTGAAAATTGAGCCAAAATTACTTTTTTTGAGCATTTCTAAGCTCATTTTTCAGCCCAAAACCCTTCAAATTTTGAATAATTTTCACTTTTTGGCTCATTTTCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23907</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>926396</contig_pos>
        <strand>+</strand>
        <context>CTASCAAAAT[G/T]AACCCGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGATTTTGGGTTGAAAACTAGGCTAATATTCTGTTGAAACTACCAAAAT</left_flank>
        <right_flank>AACCCGAAAACCCTTCAAATTCATCTCGATATTCTCCAAATTTTGGCTCG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATCTTTGAATTTCATTGAAAAAACAACACCAAAGTTGACCCGAAATTGCACTTTTTTTTTTTTGATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTTTGAAGATTTTTGGGTTGAAAATTGAGCCAAAATTACTTTTTTTGAGCATTTCTAAGCTCATTTTTCAGCCCAAAACCCTTCAAATTTTGAATAATTTTCACTTTTTGGCTCATTTTCTATCAAAAATCTTTAGATTTGAAAAAAAACCACCAAAATTACCCCCCCCCCCCCGAATTTTCAAAAATTTCGCTGGAAAAATAGGAAATTTGAAGATTTTTGAGTTGAAAATTAAGCCAAAATTGCTGTTTTGTCTAATTTGAGCACATTTCTTTGCTCATTTTTTAGCCCAAAATCCTTTAAATTCGGCTTGAAAAGTGCACTTTTTAGATGATTTTTGAAGATTTTGGGTTGAAAACTAGGCTAATATTCTGTTGAAACTACCAAAATTAACCCGAAAACCCTTCAAATTCATCTCGATATTCTCCAAATTTTGGCTCGAAATTAAGGAGTTTGAAGTTTTTAGGTTCGAAATTAAGCCGGAATTGCGTTTTTGAGCATTTCTGGGCTCGTTTTCAGCTCAAAGTCGTTCAAATTCCTCTCCAAAAGTGCATTTTTCCAATTTTCAGCAATTTTCATAATTTTCGCTGGCTCGAAATGACGGATTTTGAAGATTTTTGGCTGATTTGAGCGGTTCTGTGCATTTTTGACCAAAAAATGTTCAAATTCCTCTTAAATGATCTCCGCTACTCTTTCAAATTGCTGCTTTTAATTGCTCTCTCTCTCTCTCTCTCTTTCCCCCCAATTATCTCAAAAAAAAAACAATACCCGCTTTCAAATGTACCAACGAAATGTGCAATCTTTTTTCCCAATTTGGCACTTTTTCTTCTGTAATTTGGATCTCCCTCTTAATTACCCCCTCTCAATTATCCCCTATCCCCTGATGAGCAA</canonical>
            <polymorphic>AAATCTTTGAATTTCATTGAAAAAACAACACCAAAGTTGACCCGAAATTGCACTTTTTTTTTTTTGATTTTCAGCAAATTTTCAACTTTTGCTGGCTCGAAAATCAAGGTTTTGAAGATTTTTGGGTTGAAAATTGAGCCAAAATTACTTTTTTTGAGCATTTCTAAGCTCATTTTTCAGCCCAAAACCCTTCAAATTTTGAATAATTTTCACTTTTTGGCTCATTTTCTATCAAAAATCTTTAGATTTGAAAAAAAACCACCAAAATTACCCCCCCCCCCCCGAATTTTCAAAAATTTCGCTGGAAAAATAGGAAATTTGAAGATTTTTGAGTTGAAAATTAAGCCAAAATTGCTGTTTTGTCTAATTTGAGCACATTTCTTTGCTCATTTTTTAGCCCAAAATCCTTTAAATTCGGCTTGAAAAGTGCACTTTTTAGATGATTTTTGAAGATTTTGGGTTGAAAACTAGGCTAATATTCTGTTGAAACTACCAAAATKAACCCGAAAACCCTTCAAATTCATCTCGATATTCTCCAAATTTTGGCTCGAAATTAAGGAGTTTGAAGTTTTTAGGTTCGAAATTAAGCCGGAATTGCGTTTTTGAGCATTTCTGGGCTCGTTTTCAGCTCAAAGTCGTTCAAATTCCTCTCCAAAAGTGCATTTTTCCAATTTTCAGCAATTTTCATAATTTTCGCTGGCTCGAAATGACGGATTTTGAAGATTTTTGGCTGATTTGAGCGGTTCTGTGCATTTTTGACCAAAAAATGTTCAAATTCCTCTTAAATGATCTCCGCTACTCTTTCAAATTGCTGCTTTTAATTGCTCTCTCTCTCTCTCTCTCTTTCCCCCCAATTATCTCAAAAAAAAAACAATACCCGCTTTCAAATGTACCAACGAAATGTGCAATCTTTTTTCCCAATTTGGCACTTTTTCTTCTGTAATTTGGATCTCCCTCTTAATTACCCCCTCTCAATTATCCCCTATCCCCTGATGAGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>341 198 140 90 68 55 42 36 30</canonical_bands>
                <polymorphic_bands>341 198 145 140 68 42 36 30</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>85 85 67 61 55 52 50 46 36 33 33 31 30 27 27 23 22 21 21 21 19 18 16 14 13 13 11 11 11 10 10 10 9 9</canonical_bands>
                <polymorphic_bands>106 85 67 61 55 52 50 46 36 33 33 31 30 27 27 23 22 21 21 19 18 16 14 13 13 11 11 11 10 10 10 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGATTTTGGGTTGAAAACTA</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTATGAAAATTGCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAGATTTTGGGTTGAAAACTAGGCTAATATTCTGTTGAAACTACCAAAATTAACCCGAAAACCCTTCAAATTCATCTCGATATTCTCCAAATTTTGGCTCGAAATTAAGGAGTTTGAAGTTTTTAGGTTCGAAATTAAGCCGGAATTGCGTTTTTGAGCATTTCTGGGCTCGTTTTCAGCTCAAAGTCGTTCAAATTCCTCTCCAAAAGTGCATTTTTCCAATTTTCAGCAATTTTCATAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>GAAGATTTTGGGTTGAAAACTAGGCTAATATTCTGTTGAAACTACCAAAATKAACCCGAAAACCCTTCAAATTCATCTCGATATTCTCCAAATTTTGGCTCGAAATTAAGGAGTTTGAAGTTTTTAGGTTCGAAATTAAGCCGGAATTGCGTTTTTGAGCATTTCTGGGCTCGTTTTCAGCTCAAAGTCGTTCAAATTCCTCTCCAAAAGTGCATTTTTCCAATTTTCAGCAATTTTCATAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23908</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>929753</contig_pos>
        <strand></strand>
        <context>atcgcaattg[G/A]acaattttga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCCCATTTTCAGCCAAATTCAGCTCGTGATATCAATTTTTATCGCAATTG</left_flank>
        <right_flank>ACAATTTTGAATTTTTGGAAAAATTTGAATTCCAGGTTGATGACGTCATC</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGTTTTTTTTCCCAAAATTTGAAAATTGTCCAATCGCGATGAAAATCGATACCACGAGCTGAAATGGACTAAAATTGAGAATTCTGAAAATTTTTTTCGAAAAAAATCGATAATTGAAACATTTTTTTTCGAAATTTCAAAATTGTCCAATTGCGATAAAAATTGATATCACGAGCTGAAATTGGTTCAAAAGAAGAATGCTGGAAAAAAACTAAGAAAAAATCGAAAATTGAAACACAATTTTTTTCGAAATTTCACAAATTTTCAGAAATTTCGAAGTTGTCCAATCGCGATAAAAATTGATGTCACGAGCTGAAATGAGCGGAAAATAGAAATACTGAAAAAAATTTTCGAAAAAATCGAAATTTGAACAAAAAAATTTATTGAAAAATTCCCAAAAAAAATTTTTTTCCAAATATCGATTTTTTCTAAGTTTTTTTTTCAGTATTCCCATTTTCAGCCAAATTCAGCTCGTGATATCAATTTTTATCGCAATTGGACAATTTTGAATTTTTGGAAAAATTTGAATTCCAGGTTGATGACGTCATCGAGTTGTTGTACAAATTGAGGCACAGTGTGAAGGCTGCTGAGAAGTTGGAGTCTAGCGAGTACGCTCTGGTTCGGCTGTTGCTTAAATATCAACCGGAGACTATTCTGACACTGGCTAATGATCCGGTAGGTGCAGTTCTAGAACGGCAGAGTTCTAAAACGTCCCAGTTCTAGAATGTCATGAATTTCAGATCAACTACGGTGTCTTTTTGAATCCCCATCTCGCCTGTATCGTCATCGATCACTTTATCAGAACATCGAACATCCAAGCGGCCGCCCGAATCGTCACGTGGATGGTCCAGCAGGAGGAGCTGGATAATGAGCTTTTAAACGTCCTTGGAATGTATGTATGTGCAAAGTGGGCGGAGCTTCCAGCCGATCAGCAGACACTCGATTTAGGAGCAGTTGAGGAGGAAGAAGACGTCAATGATGACGATATTGTGGGTTTTT</canonical>
            <polymorphic>GGGTTTTTTTTCCCAAAATTTGAAAATTGTCCAATCGCGATGAAAATCGATACCACGAGCTGAAATGGACTAAAATTGAGAATTCTGAAAATTTTTTTCGAAAAAAATCGATAATTGAAACATTTTTTTTCGAAATTTCAAAATTGTCCAATTGCGATAAAAATTGATATCACGAGCTGAAATTGGTTCAAAAGAAGAATGCTGGAAAAAAACTAAGAAAAAATCGAAAATTGAAACACAATTTTTTTCGAAATTTCACAAATTTTCAGAAATTTCGAAGTTGTCCAATCGCGATAAAAATTGATGTCACGAGCTGAAATGAGCGGAAAATAGAAATACTGAAAAAAATTTTCGAAAAAATCGAAATTTGAACAAAAAAATTTATTGAAAAATTCCCAAAAAAAATTTTTTTCCAAATATCGATTTTTTCTAAGTTTTTTTTTCAGTATTCCCATTTTCAGCCAAATTCAGCTCGTGATATCAATTTTTATCGCAATTGRACAATTTTGAATTTTTGGAAAAATTTGAATTCCAGGTTGATGACGTCATCGAGTTGTTGTACAAATTGAGGCACAGTGTGAAGGCTGCTGAGAAGTTGGAGTCTAGCGAGTACGCTCTGGTTCGGCTGTTGCTTAAATATCAACCGGAGACTATTCTGACACTGGCTAATGATCCGGTAGGTGCAGTTCTAGAACGGCAGAGTTCTAAAACGTCCCAGTTCTAGAATGTCATGAATTTCAGATCAACTACGGTGTCTTTTTGAATCCCCATCTCGCCTGTATCGTCATCGATCACTTTATCAGAACATCGAACATCCAAGCGGCCGCCCGAATCGTCACGTGGATGGTCCAGCAGGAGGAGCTGGATAATGAGCTTTTAAACGTCCTTGGAATGTATGTATGTGCAAAGTGGGCGGAGCTTCCAGCCGATCAGCAGACACTCGATTTAGGAGCAGTTGAGGAGGAAGAAGACGTCAATGATGACGATATTGTGGGTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAGGAATTTTAGTGAATTTG</pcr_primer_p1>
		<pcr_primer_p2>AATTTGTACAACAACTCGATGAC</pcr_primer_p2>
		<pcr_amplicon_size>591</pcr_amplicon_size>
		<canonical_amplicon>GGACAATTTTGAATTTTTGGAAAAATTTGAATTCCAGGTTGATGACGTCATCGAGTTGTTGTACAAATT</canonical_amplicon>
		<polymorphic_amplicon>GRACAATTTTGAATTTTTGGAAAAATTTGAATTCCAGGTTGATGACGTCATCGAGTTGTTGTACAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23909</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>929974</contig_pos>
        <strand></strand>
        <context>cgtcccagtt[C/T]tagaatgtcA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATCCGGTAGGTGCAGTTCTAGAACGGCAGAGTTCTAAAACGTCCCAGTT</left_flank>
        <right_flank>TAGAATGTCATGAATTTCAGATCAACTACGGTGTCTTTTTGAATCCCCAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCGAAAATTGAAACACAATTTTTTTCGAAATTTCACAAATTTTCAGAAATTTCGAAGTTGTCCAATCGCGATAAAAATTGATGTCACGAGCTGAAATGAGCGGAAAATAGAAATACTGAAAAAAATTTTCGAAAAAATCGAAATTTGAACAAAAAAATTTATTGAAAAATTCCCAAAAAAAATTTTTTTCCAAATATCGATTTTTTCTAAGTTTTTTTTTCAGTATTCCCATTTTCAGCCAAATTCAGCTCGTGATATCAATTTTTATCGCAATTGGACAATTTTGAATTTTTGGAAAAATTTGAATTCCAGGTTGATGACGTCATCGAGTTGTTGTACAAATTGAGGCACAGTGTGAAGGCTGCTGAGAAGTTGGAGTCTAGCGAGTACGCTCTGGTTCGGCTGTTGCTTAAATATCAACCGGAGACTATTCTGACACTGGCTAATGATCCGGTAGGTGCAGTTCTAGAACGGCAGAGTTCTAAAACGTCCCAGTTCTAGAATGTCATGAATTTCAGATCAACTACGGTGTCTTTTTGAATCCCCATCTCGCCTGTATCGTCATCGATCACTTTATCAGAACATCGAACATCCAAGCGGCCGCCCGAATCGTCACGTGGATGGTCCAGCAGGAGGAGCTGGATAATGAGCTTTTAAACGTCCTTGGAATGTATGTATGTGCAAAGTGGGCGGAGCTTCCAGCCGATCAGCAGACACTCGATTTAGGAGCAGTTGAGGAGGAAGAAGACGTCAATGATGACGATATTGTGGGTTTTTTGGGAATTTTATCTAAAAATTCAAAATCGTCCAATTGCGATAAAAATCGATACCACGAGCTGAAATGGGCTGAAAATGAGAATACTGAGAACAATTTTCGAAAAAATCAAAATTGGAAAAAAATTTTTTTTGGAATTTTTCAAAAAAAAATTTTTTTCAAATTTCGACTTTTTTCGAAATTTTTCAAAAGTGTTCTCATTTTCAGCCCATTTTAGCTCGTG</canonical>
            <polymorphic>AATCGAAAATTGAAACACAATTTTTTTCGAAATTTCACAAATTTTCAGAAATTTCGAAGTTGTCCAATCGCGATAAAAATTGATGTCACGAGCTGAAATGAGCGGAAAATAGAAATACTGAAAAAAATTTTCGAAAAAATCGAAATTTGAACAAAAAAATTTATTGAAAAATTCCCAAAAAAAATTTTTTTCCAAATATCGATTTTTTCTAAGTTTTTTTTTCAGTATTCCCATTTTCAGCCAAATTCAGCTCGTGATATCAATTTTTATCGCAATTGGACAATTTTGAATTTTTGGAAAAATTTGAATTCCAGGTTGATGACGTCATCGAGTTGTTGTACAAATTGAGGCACAGTGTGAAGGCTGCTGAGAAGTTGGAGTCTAGCGAGTACGCTCTGGTTCGGCTGTTGCTTAAATATCAACCGGAGACTATTCTGACACTGGCTAATGATCCGGTAGGTGCAGTTCTAGAACGGCAGAGTTCTAAAACGTCCCAGTTYTAGAATGTCATGAATTTCAGATCAACTACGGTGTCTTTTTGAATCCCCATCTCGCCTGTATCGTCATCGATCACTTTATCAGAACATCGAACATCCAAGCGGCCGCCCGAATCGTCACGTGGATGGTCCAGCAGGAGGAGCTGGATAATGAGCTTTTAAACGTCCTTGGAATGTATGTATGTGCAAAGTGGGCGGAGCTTCCAGCCGATCAGCAGACACTCGATTTAGGAGCAGTTGAGGAGGAAGAAGACGTCAATGATGACGATATTGTGGGTTTTTTGGGAATTTTATCTAAAAATTCAAAATCGTCCAATTGCGATAAAAATCGATACCACGAGCTGAAATGGGCTGAAAATGAGAATACTGAGAACAATTTTCGAAAAAATCAAAATTGGAAAAAAATTTTTTTTGGAATTTTTCAAAAAAAAATTTTTTTCAAATTTCGACTTTTTTCGAAATTTTTCAAAAGTGTTCTCATTTTCAGCCCATTTTAGCTCGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 382 86 32</canonical_bands>
                <polymorphic_bands>532 382 86</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>491 215 166 69 32 18 9</canonical_bands>
                <polymorphic_bands>491 215 166 69 41 18</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 467 32</canonical_bands>
                <polymorphic_bands>533 467</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTCTGACACTGGCTAATGAT</pcr_primer_p1>
		<pcr_primer_p2>ACATACATTCCAAGGACGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTATTCTGACACTGGCTAATGATCCGGTAGGTGCAGTTCTAGAACGGCAGAGTTCTAAAACGTCCCAGTTCTAGAATGTCATGAATTTCAGATCAACTACGGTGTCTTTTTGAATCCCCATCTCGCCTGTATCGTCATCGATCACTTTATCAGAACATCGAACATCCAAGCGGCCGCCCGAATCGTCACGTGGATGGTCCAGCAGGAGGAGCTGGATAATGAGCTTTTAAACGTCCTTGGAATGTATGT</canonical_amplicon>
		<polymorphic_amplicon>CTATTCTGACACTGGCTAATGATCCGGTAGGTGCAGTTCTAGAACGGCAGAGTTCTAAAACGTCCCAGTTYTAGAATGTCATGAATTTCAGATCAACTACGGTGTCTTTTTGAATCCCCATCTCGCCTGTATCGTCATCGATCACTTTATCAGAACATCGAACATCCAAGCGGCCGCCCGAATCGTCACGTGGATGGTCCAGCAGGAGGAGCTGGATAATGAGCTTTTAAACGTCCTTGGAATGTATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23910</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>930283</contig_pos>
        <strand></strand>
        <context>ttcaaaatcg[T/C]ccaattgcga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATGACGATATTGTGGGTTTTTTGGGAATTTTATCTAAAAATTCAAAATCG</left_flank>
        <right_flank>CCAATTGCGATAAAAATCGATACCACGAGCTGAAATGGGCTGAAAATGAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAGGTTGATGACGTCATCGAGTTGTTGTACAAATTGAGGCACAGTGTGAAGGCTGCTGAGAAGTTGGAGTCTAGCGAGTACGCTCTGGTTCGGCTGTTGCTTAAATATCAACCGGAGACTATTCTGACACTGGCTAATGATCCGGTAGGTGCAGTTCTAGAACGGCAGAGTTCTAAAACGTCCCAGTTCTAGAATGTCATGAATTTCAGATCAACTACGGTGTCTTTTTGAATCCCCATCTCGCCTGTATCGTCATCGATCACTTTATCAGAACATCGAACATCCAAGCGGCCGCCCGAATCGTCACGTGGATGGTCCAGCAGGAGGAGCTGGATAATGAGCTTTTAAACGTCCTTGGAATGTATGTATGTGCAAAGTGGGCGGAGCTTCCAGCCGATCAGCAGACACTCGATTTAGGAGCAGTTGAGGAGGAAGAAGACGTCAATGATGACGATATTGTGGGTTTTTTGGGAATTTTATCTAAAAATTCAAAATCGTCCAATTGCGATAAAAATCGATACCACGAGCTGAAATGGGCTGAAAATGAGAATACTGAGAACAATTTTCGAAAAAATCAAAATTGGAAAAAAATTTTTTTTGGAATTTTTCAAAAAAAAATTTTTTTCAAATTTCGACTTTTTTCGAAATTTTTCAAAAGTGTTCTCATTTTCAGCCCATTTTAGCTCGTGGTATCGATTTTTATCGCAATTGGACGATTTTGAATTTTTGGAGAAAACCTTCTTAAAATCCTCTTTCAGAGAACGTTCAAATTCCCATATCTCAAAAACGACAGCTTCGACGAGCATTTCGACCTAACGAATGCACATCATCTCGTTGGAAAGTCGATGATGTGGCTTTCTCGGGATACGAAGTCGATTTCGGATTCTCTAAAGTCGAGCATCCAGGTTCTAGGCGCAGTGCTCTTCGAGAAACTTCCAGAAGCCAATTTGGGAATTGCCACGTCATCTGGGAGTGTGAAGAGAATGGTTGCGGAGAGA</canonical>
            <polymorphic>TCCAGGTTGATGACGTCATCGAGTTGTTGTACAAATTGAGGCACAGTGTGAAGGCTGCTGAGAAGTTGGAGTCTAGCGAGTACGCTCTGGTTCGGCTGTTGCTTAAATATCAACCGGAGACTATTCTGACACTGGCTAATGATCCGGTAGGTGCAGTTCTAGAACGGCAGAGTTCTAAAACGTCCCAGTTCTAGAATGTCATGAATTTCAGATCAACTACGGTGTCTTTTTGAATCCCCATCTCGCCTGTATCGTCATCGATCACTTTATCAGAACATCGAACATCCAAGCGGCCGCCCGAATCGTCACGTGGATGGTCCAGCAGGAGGAGCTGGATAATGAGCTTTTAAACGTCCTTGGAATGTATGTATGTGCAAAGTGGGCGGAGCTTCCAGCCGATCAGCAGACACTCGATTTAGGAGCAGTTGAGGAGGAAGAAGACGTCAATGATGACGATATTGTGGGTTTTTTGGGAATTTTATCTAAAAATTCAAAATCGYCCAATTGCGATAAAAATCGATACCACGAGCTGAAATGGGCTGAAAATGAGAATACTGAGAACAATTTTCGAAAAAATCAAAATTGGAAAAAAATTTTTTTTGGAATTTTTCAAAAAAAAATTTTTTTCAAATTTCGACTTTTTTCGAAATTTTTCAAAAGTGTTCTCATTTTCAGCCCATTTTAGCTCGTGGTATCGATTTTTATCGCAATTGGACGATTTTGAATTTTTGGAGAAAACCTTCTTAAAATCCTCTTTCAGAGAACGTTCAAATTCCCATATCTCAAAAACGACAGCTTCGACGAGCATTTCGACCTAACGAATGCACATCATCTCGTTGGAAAGTCGATGATGTGGCTTTCTCGGGATACGAAGTCGATTTCGGATTCTCTAAAGTCGAGCATCCAGGTTCTAGGCGCAGTGCTCTTCGAGAAACTTCCAGAAGCCAATTTGGGAATTGCCACGTCATCTGGGAGTGTGAAGAGAATGGTTGCGGAGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGACGTCAATGATGACGATATT</pcr_primer_p1>
		<pcr_primer_p2>AAGAGGATTTTAAGAAGGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>318</pcr_amplicon_size>
		<canonical_amplicon>AGACGTCAATGATGACGATATTGTGGGTTTTTTGGGAATTTTATCTAAAAATTCAAAATCGTCCAATTGCGATAAAAATCGATACCACGAGCTGAAATGGGCTGAAAATGAGAATACTGAGAACAATTTTCGAAAAAATCAAAATTGGAAAAAAATTTTTTTTGGAATTTTTCAAAAAAAAATTTTTTTCAAATTTCGACTTTTTTCGAAATTTTTCAAAAGTGTTCTCATTTTCAGCCCATTTTAGCTCGTGGTATCGATTTTTATCGCAATTGGACGATTTTGAATTTTTGGAGAAAACCTTCTTAAAATCCTCTT</canonical_amplicon>
		<polymorphic_amplicon>AGACGTCAATGATGACGATATTGTGGGTTTTTTGGGAATTTTATCTAAAAATTCAAAATCGYCCAATTGCGATAAAAATCGATACCACGAGCTGAAATGGGCTGAAAATGAGAATACTGAGAACAATTTTCGAAAAAATCAAAATTGGAAAAAAATTTTTTTTGGAATTTTTCAAAAAAAAATTTTTTTCAAATTTCGACTTTTTTCGAAATTTTTCAAAAGTGTTCTCATTTTCAGCCCATTTTAGCTCGTGGTATCGATTTTTATCGCAATTGGACGATTTTGAATTTTTGGAGAAAACCTTCTTAAAATCCTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23911</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>930347</contig_pos>
        <strand></strand>
        <context>actgagaaca[A/T]ttttcgaaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATCGATACCACGAGCTGAAATGGGCTGAAAATGAGAATACTGAGAACA</left_flank>
        <right_flank>TTTTCGAAAAAATCAAAATTGGAAAAAAATTTTTTTTGGAATTTTTCAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTGGAGTCTAGCGAGTACGCTCTGGTTCGGCTGTTGCTTAAATATCAACCGGAGACTATTCTGACACTGGCTAATGATCCGGTAGGTGCAGTTCTAGAACGGCAGAGTTCTAAAACGTCCCAGTTCTAGAATGTCATGAATTTCAGATCAACTACGGTGTCTTTTTGAATCCCCATCTCGCCTGTATCGTCATCGATCACTTTATCAGAACATCGAACATCCAAGCGGCCGCCCGAATCGTCACGTGGATGGTCCAGCAGGAGGAGCTGGATAATGAGCTTTTAAACGTCCTTGGAATGTATGTATGTGCAAAGTGGGCGGAGCTTCCAGCCGATCAGCAGACACTCGATTTAGGAGCAGTTGAGGAGGAAGAAGACGTCAATGATGACGATATTGTGGGTTTTTTGGGAATTTTATCTAAAAATTCAAAATCGTCCAATTGCGATAAAAATCGATACCACGAGCTGAAATGGGCTGAAAATGAGAATACTGAGAACAATTTTCGAAAAAATCAAAATTGGAAAAAAATTTTTTTTGGAATTTTTCAAAAAAAAATTTTTTTCAAATTTCGACTTTTTTCGAAATTTTTCAAAAGTGTTCTCATTTTCAGCCCATTTTAGCTCGTGGTATCGATTTTTATCGCAATTGGACGATTTTGAATTTTTGGAGAAAACCTTCTTAAAATCCTCTTTCAGAGAACGTTCAAATTCCCATATCTCAAAAACGACAGCTTCGACGAGCATTTCGACCTAACGAATGCACATCATCTCGTTGGAAAGTCGATGATGTGGCTTTCTCGGGATACGAAGTCGATTTCGGATTCTCTAAAGTCGAGCATCCAGGTTCTAGGCGCAGTGCTCTTCGAGAAACTTCCAGAAGCCAATTTGGGAATTGCCACGTCATCTGGGAGTGTGAAGAGAATGGTTGCGGAGAGATTGGCGGCGAAGGAAGGAGAAGAGCAGTCGGAAGACGTCAAGAAGATTCTGGAGACGATTGGAG</canonical>
            <polymorphic>GTTGGAGTCTAGCGAGTACGCTCTGGTTCGGCTGTTGCTTAAATATCAACCGGAGACTATTCTGACACTGGCTAATGATCCGGTAGGTGCAGTTCTAGAACGGCAGAGTTCTAAAACGTCCCAGTTCTAGAATGTCATGAATTTCAGATCAACTACGGTGTCTTTTTGAATCCCCATCTCGCCTGTATCGTCATCGATCACTTTATCAGAACATCGAACATCCAAGCGGCCGCCCGAATCGTCACGTGGATGGTCCAGCAGGAGGAGCTGGATAATGAGCTTTTAAACGTCCTTGGAATGTATGTATGTGCAAAGTGGGCGGAGCTTCCAGCCGATCAGCAGACACTCGATTTAGGAGCAGTTGAGGAGGAAGAAGACGTCAATGATGACGATATTGTGGGTTTTTTGGGAATTTTATCTAAAAATTCAAAATCGTCCAATTGCGATAAAAATCGATACCACGAGCTGAAATGGGCTGAAAATGAGAATACTGAGAACAWTTTTCGAAAAAATCAAAATTGGAAAAAAATTTTTTTTGGAATTTTTCAAAAAAAAATTTTTTTCAAATTTCGACTTTTTTCGAAATTTTTCAAAAGTGTTCTCATTTTCAGCCCATTTTAGCTCGTGGTATCGATTTTTATCGCAATTGGACGATTTTGAATTTTTGGAGAAAACCTTCTTAAAATCCTCTTTCAGAGAACGTTCAAATTCCCATATCTCAAAAACGACAGCTTCGACGAGCATTTCGACCTAACGAATGCACATCATCTCGTTGGAAAGTCGATGATGTGGCTTTCTCGGGATACGAAGTCGATTTCGGATTCTCTAAAGTCGAGCATCCAGGTTCTAGGCGCAGTGCTCTTCGAGAAACTTCCAGAAGCCAATTTGGGAATTGCCACGTCATCTGGGAGTGTGAAGAGAATGGTTGCGGAGAGATTGGCGGCGAAGGAAGGAGAAGAGCAGTCGGAAGACGTCAAGAAGATTCTGGAGACGATTGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>271 176 139 110 61 60 47 18 18 15 15 15 13 12 11 11 8</canonical_bands>
                <polymorphic_bands>271 176 139 110 78 61 47 18 15 15 15 13 12 11 11 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACGTCAATGATGACGATATT</pcr_primer_p1>
		<pcr_primer_p2>AAGAGGATTTTAAGAAGGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>318</pcr_amplicon_size>
		<canonical_amplicon>AGACGTCAATGATGACGATATTGTGGGTTTTTTGGGAATTTTATCTAAAAATTCAAAATCGTCCAATTGCGATAAAAATCGATACCACGAGCTGAAATGGGCTGAAAATGAGAATACTGAGAACAATTTTCGAAAAAATCAAAATTGGAAAAAAATTTTTTTTGGAATTTTTCAAAAAAAAATTTTTTTCAAATTTCGACTTTTTTCGAAATTTTTCAAAAGTGTTCTCATTTTCAGCCCATTTTAGCTCGTGGTATCGATTTTTATCGCAATTGGACGATTTTGAATTTTTGGAGAAAACCTTCTTAAAATCCTCTT</canonical_amplicon>
		<polymorphic_amplicon>AGACGTCAATGATGACGATATTGTGGGTTTTTTGGGAATTTTATCTAAAAATTCAAAATCGTCCAATTGCGATAAAAATCGATACCACGAGCTGAAATGGGCTGAAAATGAGAATACTGAGAACAWTTTTCGAAAAAATCAAAATTGGAAAAAAATTTTTTTTGGAATTTTTCAAAAAAAAATTTTTTTCAAATTTCGACTTTTTTCGAAATTTTTCAAAAGTGTTCTCATTTTCAGCCCATTTTAGCTCGTGGTATCGATTTTTATCGCAATTGGACGATTTTGAATTTTTGGAGAAAACCTTCTTAAAATCCTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23912</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>947347</contig_pos>
        <strand>+</strand>
        <context>TGGTGTCTCC[G/T]GCCAAAATGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCCTCCGGCCAACGCCTTGGTCACAACCTCCGCATCCTTGGTGTCTCC</left_flank>
        <right_flank>GCCAAAATGTACAGGGAGAGGATTCCTTTGGAGTAAGATTGATACAAAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTAGCTGGAGCGGCTGGCTTGGCTGGAGCTGGCTTGGCTGGAGCTGGCTTCGCTGGAGCTCCGCGAGCCGGTGCCATAGCTGGCTTGGAAGCTGGCCGGGATGATGGAGGAGTTGGAGCTGGCGCGCGAGAAGTGAGAGCTCTCGCTGGAGCAGCTGTGGTGGGTCTAGATGGCTTCGCAGCGGCTGGCTTAGCTGCAGGGTTGGTTGCTGCGGATCTTGGGATTGCTGGAGCTGGAATTGCAGTCAGGGCATCCTTCGACTTGACAGTTGGCGCGTTGAGGAATGGGAGAGCCTTTGCGGCCTTGTCCAGAGATTGTTGGATGCGAGAAAGGCTCGAATTTCCTGACACCAACACTCGCACCACTGGCTTCTCGGCCTCTGCAGGTCTCCAGAGGAGCACTCCAATCGTTCCGTGCTCTGCGCCAGCCTTCTCGACCTCTGACTCGTTTCCTCCGGCCAACGCCTTGGTCACAACCTCCGCATCCTTGGTGTCTCCTGCCAAAATGTACAGGGAGAGGATTCCTTTGGAGTAAGATTGATACAAAACGTGTGCCGGGTATTTGGGGTCGAAAATCAAGGATGTTGGAGAGAGAAGCTTCGAATTGGCCTCCTGAATCGCTTTGACGACTTCTCCACTGCTTCCTGACTTCGCTCCTTTGAGTGGTTTGGTGTTGGTGAAGACAGGCAGGGAGTTGCCCTGGAAAAATCCTTTTCTAGCATTTCTAGACGATTTTTTATCGATTTTCGGAGCTACCAAATTTTTTGAATTTGGCGCCAAAATGCGGGTGTCCCGGAGGAAGGGAAACAAGGCGTTTTTGCCTAAGCCTATAATTTAAAAAAAAATCTTTAAAAAATTTCAGCCAAAAAAGTGCTGAAATCGGCGAAAATCAGTAAAAATCGCACATTTTTGGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>CTTTAGCTGGAGCGGCTGGCTTGGCTGGAGCTGGCTTGGCTGGAGCTGGCTTCGCTGGAGCTCCGCGAGCCGGTGCCATAGCTGGCTTGGAAGCTGGCCGGGATGATGGAGGAGTTGGAGCTGGCGCGCGAGAAGTGAGAGCTCTCGCTGGAGCAGCTGTGGTGGGTCTAGATGGCTTCGCAGCGGCTGGCTTAGCTGCAGGGTTGGTTGCTGCGGATCTTGGGATTGCTGGAGCTGGAATTGCAGTCAGGGCATCCTTCGACTTGACAGTTGGCGCGTTGAGGAATGGGAGAGCCTTTGCGGCCTTGTCCAGAGATTGTTGGATGCGAGAAAGGCTCGAATTTCCTGACACCAACACTCGCACCACTGGCTTCTCGGCCTCTGCAGGTCTCCAGAGGAGCACTCCAATCGTTCCGTGCTCTGCGCCAGCCTTCTCGACCTCTGACTCGTTTCCTCCGGCCAACGCCTTGGTCACAACCTCCGCATCCTTGGTGTCTCCKGCCAAAATGTACAGGGAGAGGATTCCTTTGGAGTAAGATTGATACAAAACGTGTGCCGGGTATTTGGGGTCGAAAATCAAGGATGTTGGAGAGAGAAGCTTCGAATTGGCCTCCTGAATCGCTTTGACGACTTCTCCACTGCTTCCTGACTTCGCTCCTTTGAGTGGTTTGGTGTTGGTGAAGACAGGCAGGGAGTTGCCCTGGAAAAATCCTTTTCTAGCATTTCTAGACGATTTTTTATCGATTTTCGGAGCTACCAAATTTTTTGAATTTGGCGCCAAAATGCGGGTGTCCCGGAGGAAGGGAAACAAGGCGTTTTTGCCTAAGCCTATAATTTAAAAAAAAATCTTTAAAAAATTTCAGCCAAAAAAGTGCTGAAATCGGCGAAAATCAGTAAAAATCGCACATTTTTGGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCCTGACACCAACACTC</pcr_primer_p1>
		<pcr_primer_p2>CTCCAACATCCTTGATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTTCCTGACACCAACACTCGCACCACTGGCTTCTCGGCCTCTGCAGGTCTCCAGAGGAGCACTCCAATCGTTCCGTGCTCTGCGCCAGCCTTCTCGACCTCTGACTCGTTTCCTCCGGCCAACGCCTTGGTCACAACCTCCGCATCCTTGGTGTCTCCTGCCAAAATGTACAGGGAGAGGATTCCTTTGGAGTAAGATTGATACAAAACGTGTGCCGGGTATTTGGGGTCGAAAATCAAGGATGTTGGAG</canonical_amplicon>
		<polymorphic_amplicon>ATTTCCTGACACCAACACTCGCACCACTGGCTTCTCGGCCTCTGCAGGTCTCCAGAGGAGCACTCCAATCGTTCCGTGCTCTGCGCCAGCCTTCTCGACCTCTGACTCGTTTCCTCCGGCCAACGCCTTGGTCACAACCTCCGCATCCTTGGTGTCTCCKGCCAAAATGTACAGGGAGAGGATTCCTTTGGAGTAAGATTGATACAAAACGTGTGCCGGGTATTTGGGGTCGAAAATCAAGGATGTTGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23913</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>947383</contig_pos>
        <strand>+</strand>
        <context>CTTTGGAGTA[A/G]GATTGRTACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCTTGGTGTCTCCTGCCAAAATGTACAGGGAGAGGATTCCTTTGGAGTA</left_flank>
        <right_flank>GATTGATACAAAACGTGTGCCGGGTATTTGGGGTCGAAAATCAAGGATGT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCTGGAGCTGGCTTCGCTGGAGCTCCGCGAGCCGGTGCCATAGCTGGCTTGGAAGCTGGCCGGGATGATGGAGGAGTTGGAGCTGGCGCGCGAGAAGTGAGAGCTCTCGCTGGAGCAGCTGTGGTGGGTCTAGATGGCTTCGCAGCGGCTGGCTTAGCTGCAGGGTTGGTTGCTGCGGATCTTGGGATTGCTGGAGCTGGAATTGCAGTCAGGGCATCCTTCGACTTGACAGTTGGCGCGTTGAGGAATGGGAGAGCCTTTGCGGCCTTGTCCAGAGATTGTTGGATGCGAGAAAGGCTCGAATTTCCTGACACCAACACTCGCACCACTGGCTTCTCGGCCTCTGCAGGTCTCCAGAGGAGCACTCCAATCGTTCCGTGCTCTGCGCCAGCCTTCTCGACCTCTGACTCGTTTCCTCCGGCCAACGCCTTGGTCACAACCTCCGCATCCTTGGTGTCTCCTGCCAAAATGTACAGGGAGAGGATTCCTTTGGAGTAAGATTGATACAAAACGTGTGCCGGGTATTTGGGGTCGAAAATCAAGGATGTTGGAGAGAGAAGCTTCGAATTGGCCTCCTGAATCGCTTTGACGACTTCTCCACTGCTTCCTGACTTCGCTCCTTTGAGTGGTTTGGTGTTGGTGAAGACAGGCAGGGAGTTGCCCTGGAAAAATCCTTTTCTAGCATTTCTAGACGATTTTTTATCGATTTTCGGAGCTACCAAATTTTTTGAATTTGGCGCCAAAATGCGGGTGTCCCGGAGGAAGGGAAACAAGGCGTTTTTGCCTAAGCCTATAATTTAAAAAAAAATCTTTAAAAAATTTCAGCCAAAAAAGTGCTGAAATCGGCGAAAATCAGTAAAAATCGCACATTTTTGGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>TGGCTGGAGCTGGCTTCGCTGGAGCTCCGCGAGCCGGTGCCATAGCTGGCTTGGAAGCTGGCCGGGATGATGGAGGAGTTGGAGCTGGCGCGCGAGAAGTGAGAGCTCTCGCTGGAGCAGCTGTGGTGGGTCTAGATGGCTTCGCAGCGGCTGGCTTAGCTGCAGGGTTGGTTGCTGCGGATCTTGGGATTGCTGGAGCTGGAATTGCAGTCAGGGCATCCTTCGACTTGACAGTTGGCGCGTTGAGGAATGGGAGAGCCTTTGCGGCCTTGTCCAGAGATTGTTGGATGCGAGAAAGGCTCGAATTTCCTGACACCAACACTCGCACCACTGGCTTCTCGGCCTCTGCAGGTCTCCAGAGGAGCACTCCAATCGTTCCGTGCTCTGCGCCAGCCTTCTCGACCTCTGACTCGTTTCCTCCGGCCAACGCCTTGGTCACAACCTCCGCATCCTTGGTGTCTCCTGCCAAAATGTACAGGGAGAGGATTCCTTTGGAGTARGATTGATACAAAACGTGTGCCGGGTATTTGGGGTCGAAAATCAAGGATGTTGGAGAGAGAAGCTTCGAATTGGCCTCCTGAATCGCTTTGACGACTTCTCCACTGCTTCCTGACTTCGCTCCTTTGAGTGGTTTGGTGTTGGTGAAGACAGGCAGGGAGTTGCCCTGGAAAAATCCTTTTCTAGCATTTCTAGACGATTTTTTATCGATTTTCGGAGCTACCAAATTTTTTGAATTTGGCGCCAAAATGCGGGTGTCCCGGAGGAAGGGAAACAAGGCGTTTTTGCCTAAGCCTATAATTTAAAAAAAAATCTTTAAAAAATTTCAGCCAAAAAAGTGCTGAAATCGGCGAAAATCAGTAAAAATCGCACATTTTTGGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCCTGACACCAACACTC</pcr_primer_p1>
		<pcr_primer_p2>CTCCAACATCCTTGATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTTCCTGACACCAACACTCGCACCACTGGCTTCTCGGCCTCTGCAGGTCTCCAGAGGAGCACTCCAATCGTTCCGTGCTCTGCGCCAGCCTTCTCGACCTCTGACTCGTTTCCTCCGGCCAACGCCTTGGTCACAACCTCCGCATCCTTGGTGTCTCCTGCCAAAATGTACAGGGAGAGGATTCCTTTGGAGTAAGATTGATACAAAACGTGTGCCGGGTATTTGGGGTCGAAAATCAAGGATGTTGGAG</canonical_amplicon>
		<polymorphic_amplicon>ATTTCCTGACACCAACACTCGCACCACTGGCTTCTCGGCCTCTGCAGGTCTCCAGAGGAGCACTCCAATCGTTCCGTGCTCTGCGCCAGCCTTCTCGACCTCTGACTCGTTTCCTCCGGCCAACGCCTTGGTCACAACCTCCGCATCCTTGGTGTCTCCTGCCAAAATGTACAGGGAGAGGATTCCTTTGGAGTARGATTGATACAAAACGTGTGCCGGGTATTTGGGGTCGAAAATCAAGGATGTTGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23914</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>947389</contig_pos>
        <strand>+</strand>
        <context>AGTARGATTG[A/G]TACAAAACGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGTCTCCTGCCAAAATGTACAGGGAGAGGATTCCTTTGGAGTAAGATTG</left_flank>
        <right_flank>TACAAAACGTGTGCCGGGTATTTGGGGTCGAAAATCAAGGATGTTGGAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCTGGCTTCGCTGGAGCTCCGCGAGCCGGTGCCATAGCTGGCTTGGAAGCTGGCCGGGATGATGGAGGAGTTGGAGCTGGCGCGCGAGAAGTGAGAGCTCTCGCTGGAGCAGCTGTGGTGGGTCTAGATGGCTTCGCAGCGGCTGGCTTAGCTGCAGGGTTGGTTGCTGCGGATCTTGGGATTGCTGGAGCTGGAATTGCAGTCAGGGCATCCTTCGACTTGACAGTTGGCGCGTTGAGGAATGGGAGAGCCTTTGCGGCCTTGTCCAGAGATTGTTGGATGCGAGAAAGGCTCGAATTTCCTGACACCAACACTCGCACCACTGGCTTCTCGGCCTCTGCAGGTCTCCAGAGGAGCACTCCAATCGTTCCGTGCTCTGCGCCAGCCTTCTCGACCTCTGACTCGTTTCCTCCGGCCAACGCCTTGGTCACAACCTCCGCATCCTTGGTGTCTCCTGCCAAAATGTACAGGGAGAGGATTCCTTTGGAGTAAGATTGATACAAAACGTGTGCCGGGTATTTGGGGTCGAAAATCAAGGATGTTGGAGAGAGAAGCTTCGAATTGGCCTCCTGAATCGCTTTGACGACTTCTCCACTGCTTCCTGACTTCGCTCCTTTGAGTGGTTTGGTGTTGGTGAAGACAGGCAGGGAGTTGCCCTGGAAAAATCCTTTTCTAGCATTTCTAGACGATTTTTTATCGATTTTCGGAGCTACCAAATTTTTTGAATTTGGCGCCAAAATGCGGGTGTCCCGGAGGAAGGGAAACAAGGCGTTTTTGCCTAAGCCTATAATTTAAAAAAAAATCTTTAAAAAATTTCAGCCAAAAAAGTGCTGAAATCGGCGAAAATCAGTAAAAATCGCACATTTTTGGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>GAGCTGGCTTCGCTGGAGCTCCGCGAGCCGGTGCCATAGCTGGCTTGGAAGCTGGCCGGGATGATGGAGGAGTTGGAGCTGGCGCGCGAGAAGTGAGAGCTCTCGCTGGAGCAGCTGTGGTGGGTCTAGATGGCTTCGCAGCGGCTGGCTTAGCTGCAGGGTTGGTTGCTGCGGATCTTGGGATTGCTGGAGCTGGAATTGCAGTCAGGGCATCCTTCGACTTGACAGTTGGCGCGTTGAGGAATGGGAGAGCCTTTGCGGCCTTGTCCAGAGATTGTTGGATGCGAGAAAGGCTCGAATTTCCTGACACCAACACTCGCACCACTGGCTTCTCGGCCTCTGCAGGTCTCCAGAGGAGCACTCCAATCGTTCCGTGCTCTGCGCCAGCCTTCTCGACCTCTGACTCGTTTCCTCCGGCCAACGCCTTGGTCACAACCTCCGCATCCTTGGTGTCTCCTGCCAAAATGTACAGGGAGAGGATTCCTTTGGAGTAAGATTGRTACAAAACGTGTGCCGGGTATTTGGGGTCGAAAATCAAGGATGTTGGAGAGAGAAGCTTCGAATTGGCCTCCTGAATCGCTTTGACGACTTCTCCACTGCTTCCTGACTTCGCTCCTTTGAGTGGTTTGGTGTTGGTGAAGACAGGCAGGGAGTTGCCCTGGAAAAATCCTTTTCTAGCATTTCTAGACGATTTTTTATCGATTTTCGGAGCTACCAAATTTTTTGAATTTGGCGCCAAAATGCGGGTGTCCCGGAGGAAGGGAAACAAGGCGTTTTTGCCTAAGCCTATAATTTAAAAAAAAATCTTTAAAAAATTTCAGCCAAAAAAGTGCTGAAATCGGCGAAAATCAGTAAAAATCGCACATTTTTGGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCCTGACACCAACACTC</pcr_primer_p1>
		<pcr_primer_p2>TCTCTCCAACATCCTTGATTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ATTTCCTGACACCAACACTCGCACCACTGGCTTCTCGGCCTCTGCAGGTCTCCAGAGGAGCACTCCAATCGTTCCGTGCTCTGCGCCAGCCTTCTCGACCTCTGACTCGTTTCCTCCGGCCAACGCCTTGGTCACAACCTCCGCATCCTTGGTGTCTCCTGCCAAAATGTACAGGGAGAGGATTCCTTTGGAGTAAGATTGATACAAAACGTGTGCCGGGTATTTGGGGTCGAAAATCAAGGATGTTGGAGAGA</canonical_amplicon>
		<polymorphic_amplicon>ATTTCCTGACACCAACACTCGCACCACTGGCTTCTCGGCCTCTGCAGGTCTCCAGAGGAGCACTCCAATCGTTCCGTGCTCTGCGCCAGCCTTCTCGACCTCTGACTCGTTTCCTCCGGCCAACGCCTTGGTCACAACCTCCGCATCCTTGGTGTCTCCTGCCAAAATGTACAGGGAGAGGATTCCTTTGGAGTAAGATTGRTACAAAACGTGTGCCGGGTATTTGGGGTCGAAAATCAAGGATGTTGGAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23915</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>947459</contig_pos>
        <strand>+</strand>
        <context>CGAATTGGCC[A/T]CCTGAATCGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTGGGGTCGAAAATCAAGGATGTTGGAGAGAGAAGCTTCGAATTGGCC</left_flank>
        <right_flank>CCTGAATCGCTTTGACGACTTCTCCACTGCTTCCTGACTTCGCTCCTTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTGGAGCTGGCGCGCGAGAAGTGAGAGCTCTCGCTGGAGCAGCTGTGGTGGGTCTAGATGGCTTCGCAGCGGCTGGCTTAGCTGCAGGGTTGGTTGCTGCGGATCTTGGGATTGCTGGAGCTGGAATTGCAGTCAGGGCATCCTTCGACTTGACAGTTGGCGCGTTGAGGAATGGGAGAGCCTTTGCGGCCTTGTCCAGAGATTGTTGGATGCGAGAAAGGCTCGAATTTCCTGACACCAACACTCGCACCACTGGCTTCTCGGCCTCTGCAGGTCTCCAGAGGAGCACTCCAATCGTTCCGTGCTCTGCGCCAGCCTTCTCGACCTCTGACTCGTTTCCTCCGGCCAACGCCTTGGTCACAACCTCCGCATCCTTGGTGTCTCCTGCCAAAATGTACAGGGAGAGGATTCCTTTGGAGTAAGATTGATACAAAACGTGTGCCGGGTATTTGGGGTCGAAAATCAAGGATGTTGGAGAGAGAAGCTTCGAATTGGCCTCCTGAATCGCTTTGACGACTTCTCCACTGCTTCCTGACTTCGCTCCTTTGAGTGGTTTGGTGTTGGTGAAGACAGGCAGGGAGTTGCCCTGGAAAAATCCTTTTCTAGCATTTCTAGACGATTTTTTATCGATTTTCGGAGCTACCAAATTTTTTGAATTTGGCGCCAAAATGCGGGTGTCCCGGAGGAAGGGAAACAAGGCGTTTTTGCCTAAGCCTATAATTTAAAAAAAAATCTTTAAAAAATTTCAGCCAAAAAAGTGCTGAAATCGGCGAAAATCAGTAAAAATCGCACATTTTTGGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>AGTTGGAGCTGGCGCGCGAGAAGTGAGAGCTCTCGCTGGAGCAGCTGTGGTGGGTCTAGATGGCTTCGCAGCGGCTGGCTTAGCTGCAGGGTTGGTTGCTGCGGATCTTGGGATTGCTGGAGCTGGAATTGCAGTCAGGGCATCCTTCGACTTGACAGTTGGCGCGTTGAGGAATGGGAGAGCCTTTGCGGCCTTGTCCAGAGATTGTTGGATGCGAGAAAGGCTCGAATTTCCTGACACCAACACTCGCACCACTGGCTTCTCGGCCTCTGCAGGTCTCCAGAGGAGCACTCCAATCGTTCCGTGCTCTGCGCCAGCCTTCTCGACCTCTGACTCGTTTCCTCCGGCCAACGCCTTGGTCACAACCTCCGCATCCTTGGTGTCTCCTGCCAAAATGTACAGGGAGAGGATTCCTTTGGAGTAAGATTGATACAAAACGTGTGCCGGGTATTTGGGGTCGAAAATCAAGGATGTTGGAGAGAGAAGCTTCGAATTGGCCWCCTGAATCGCTTTGACGACTTCTCCACTGCTTCCTGACTTCGCTCCTTTGAGTGGTTTGGTGTTGGTGAAGACAGGCAGGGAGTTGCCCTGGAAAAATCCTTTTCTAGCATTTCTAGACGATTTTTTATCGATTTTCGGAGCTACCAAATTTTTTGAATTTGGCGCCAAAATGCGGGTGTCCCGGAGGAAGGGAAACAAGGCGTTTTTGCCTAAGCCTATAATTTAAAAAAAAATCTTTAAAAAATTTCAGCCAAAAAAGTGCTGAAATCGGCGAAAATCAGTAAAAATCGCACATTTTTGGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>386 179 142 81 56 47 42 35 32</canonical_bands>
                <polymorphic_bands>386 211 142 81 56 47 42 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGTACAGGGAGAGGATTC</pcr_primer_p1>
		<pcr_primer_p2>TAGCTCCGAAAATCGATAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAATGTACAGGGAGAGGATTCCTTTGGAGTAAGATTGATACAAAACGTGTGCCGGGTATTTGGGGTCGAAAATCAAGGATGTTGGAGAGAGAAGCTTCGAATTGGCCTCCTGAATCGCTTTGACGACTTCTCCACTGCTTCCTGACTTCGCTCCTTTGAGTGGTTTGGTGTTGGTGAAGACAGGCAGGGAGTTGCCCTGGAAAAATCCTTTTCTAGCATTTCTAGACGATTTTTTATCGATTTTCGGAGCTA</canonical_amplicon>
		<polymorphic_amplicon>AAATGTACAGGGAGAGGATTCCTTTGGAGTAAGATTGATACAAAACGTGTGCCGGGTATTTGGGGTCGAAAATCAAGGATGTTGGAGAGAGAAGCTTCGAATTGGCCWCCTGAATCGCTTTGACGACTTCTCCACTGCTTCCTGACTTCGCTCCTTTGAGTGGTTTGGTGTTGGTGAAGACAGGCAGGGAGTTGCCCTGGAAAAATCCTTTTCTAGCATTTCTAGACGATTTTTTATCGATTTTCGGAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23922</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>953509</contig_pos>
        <strand></strand>
        <context>ctaaataagc[G/A]ccctccaaca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATGAGATAATTGAGCTCAAAGTGCAAACATATCGTAAACACTAAATAAGC</left_flank>
        <right_flank>CCCTCCAACAGTTAACTTCGAGTCCAAATATCACAATTTCTGTCAGAGAT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAAAATTAGATCAAAATGATCAGCAAAGTGCGAGGAATCGTTTGCAATTTGATTCTTAGTTTCAGCCNNNNNNNNNNAAACTAAGAATCAAATTGCAAACGATTACTGACATTTTGCTGCTCATTTTGATCTAATTTTTAGTTCTCTGGGCCAATTTTGACAAAAGTTAATGTAAAAAATCGAACTTCTCCGTCTAGTTAGGAATATAGTAAAGTTAGATGTGCAGGTCCTCCTTTATTTCTAGCTAAATTCTCCTGGACCAGAGGCTGGATCATGGGGCTGATGATAAAGGTCTGGACCGTCCGACCCGTTCCCAACCATTTAACTTTGAACTCAATTATCTCGATTTCAGTGAGAGATATCAAAAATTTGTCAACTGATAAAATATAGGCCAAATTATGATAGACAATTGATCAGTTGACCCCTTTTTGATATCTTTTAAAGGAAATGAGATAATTGAGCTCAAAGTGCAAACATATCGTAAACACTAAATAAGCGCCCTCCAACAGTTAACTTCGAGTCCAAATATCACAATTTCTGTCAGAGATATCAAAAAGCGGTTAACTGATAAAATATTGGTAATATTATGAGGAATATTTTATCAGTTGACAGATTTCCGATATCTTCCACAGGAATTGAGATAATTGAGCTTAAAGCTGACGACTTGGGTGAGCGCCAATTAAAGGAAATACGGTAGCTAGCTGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTGGACCCGCTGAAAAATCTAGATTCTCCAGAACCCCAAAAGTCAGGAGATTTGTCAAAGAAAACCCAAAAAACCCTATAAATCGGTCACCTCAAGCCTAGGAGAGGAGGAAAACGGAAAAAGAGGTGTGGTGGATGGATGGAGGGAGAAGAAGACAAATTGGCTATGTATATGTGCACACGGCCACAATTACGAAGAAGCCATGAGCAATCACCTTGGTAGCCAGAGAAGGGGCACATCTAACGG</canonical>
            <polymorphic>ATGAAAATTAGATCAAAATGATCAGCAAAGTGCGAGGAATCGTTTGCAATTTGATTCTTAGTTTCAGCCNNNNNNNNNNAAACTAAGAATCAAATTGCAAACGATTACTGACATTTTGCTGCTCATTTTGATCTAATTTTTAGTTCTCTGGGCCAATTTTGACAAAAGTTAATGTAAAAAATCGAACTTCTCCGTCTAGTTAGGAATATAGTAAAGTTAGATGTGCAGGTCCTCCTTTATTTCTAGCTAAATTCTCCTGGACCAGAGGCTGGATCATGGGGCTGATGATAAAGGTCTGGACCGTCCGACCCGTTCCCAACCATTTAACTTTGAACTCAATTATCTCGATTTCAGTGAGAGATATCAAAAATTTGTCAACTGATAAAATATAGGCCAAATTATGATAGACAATTGATCAGTTGACCCCTTTTTGATATCTTTTAAAGGAAATGAGATAATTGAGCTCAAAGTGCAAACATATCGTAAACACTAAATAAGCRCCCTCCAACAGTTAACTTCGAGTCCAAATATCACAATTTCTGTCAGAGATATCAAAAAGCGGTTAACTGATAAAATATTGGTAATATTATGAGGAATATTTTATCAGTTGACAGATTTCCGATATCTTCCACAGGAATTGAGATAATTGAGCTTAAAGCTGACGACTTGGGTGAGCGCCAATTAAAGGAAATACGGTAGCTAGCTGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTGGACCCGCTGAAAAATCTAGATTCTCCAGAACCCCAAAAGTCAGGAGATTTGTCAAAGAAAACCCAAAAAACCCTATAAATCGGTCACCTCAAGCCTAGGAGAGGAGGAAAACGGAAAAAGAGGTGTGGTGGATGGATGGAGGGAGAAGAAGACAAATTGGCTATGTATATGTGCACACGGCCACAATTACGAAGAAGCCATGAGCAATCACCTTGGTAGCCAGAGAAGGGGCACATCTAACGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 323 177</canonical_bands>
                <polymorphic_bands>677 323</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>501 322 177</canonical_bands>
                <polymorphic_bands>678 322</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTAGCTAAATTCTCCTGGAC</pcr_primer_p1>
		<pcr_primer_p2>CACCGGGATACTGACTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>518</pcr_amplicon_size>
		<canonical_amplicon>TTTCTAGCTAAATTCTCCTGGACCAGAGGCTGGATCATGGGGCTGATGATAAAGGTCTGGACCGTCCGACCCGTTCCCAACCATTTAACTTTGAACTCAATTATCTCGATTTCAGTGAGAGATATCAAAAATTTGTCAACTGATAAAATATAGGCCAAATTATGATAGACAATTGATCAGTTGACCCCTTTTTGATATCTTTTAAAGGAAATGAGATAATTGAGCTCAAAGTGCAAACATATCGTAAACACTAAATAAGCGCCCTCCAACAGTTAACTTCGAGTCCAAATATCACAATTTCTGTCAGAGATATCAAAAAGCGGTTAACTGATAAAATATTGGTAATATTATGAGGAATATTTTATCAGTTGACAGATTTCCGATATCTTCCACAGGAATTGAGATAATTGAGCTTAAAGCTGACGACTTGGGTGAGCGCCAATTAAAGGAAATACGGTAGCTAGCTGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTAGCTAAATTCTCCTGGACCAGAGGCTGGATCATGGGGCTGATGATAAAGGTCTGGACCGTCCGACCCGTTCCCAACCATTTAACTTTGAACTCAATTATCTCGATTTCAGTGAGAGATATCAAAAATTTGTCAACTGATAAAATATAGGCCAAATTATGATAGACAATTGATCAGTTGACCCCTTTTTGATATCTTTTAAAGGAAATGAGATAATTGAGCTCAAAGTGCAAACATATCGTAAACACTAAATAAGCRCCCTCCAACAGTTAACTTCGAGTCCAAATATCACAATTTCTGTCAGAGATATCAAAAAGCGGTTAACTGATAAAATATTGGTAATATTATGAGGAATATTTTATCAGTTGACAGATTTCCGATATCTTCCACAGGAATTGAGATAATTGAGCTTAAAGCTGACGACTTGGGTGAGCGCCAATTAAAGGAAATACGGTAGCTAGCTGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23923</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>953522</contig_pos>
        <strand></strand>
        <context>ctccaacagt[T/C]aacttcgagt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCTCAAAGTGCAAACATATCGTAAACACTAAATAAGCGCCCTCCAACAGT</left_flank>
        <right_flank>AACTTCGAGTCCAAATATCACAATTTCTGTCAGAGATATCAAAAAGCGGT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAATGATCAGCAAAGTGCGAGGAATCGTTTGCAATTTGATTCTTAGTTTCAGCCNNNNNNNNNNAAACTAAGAATCAAATTGCAAACGATTACTGACATTTTGCTGCTCATTTTGATCTAATTTTTAGTTCTCTGGGCCAATTTTGACAAAAGTTAATGTAAAAAATCGAACTTCTCCGTCTAGTTAGGAATATAGTAAAGTTAGATGTGCAGGTCCTCCTTTATTTCTAGCTAAATTCTCCTGGACCAGAGGCTGGATCATGGGGCTGATGATAAAGGTCTGGACCGTCCGACCCGTTCCCAACCATTTAACTTTGAACTCAATTATCTCGATTTCAGTGAGAGATATCAAAAATTTGTCAACTGATAAAATATAGGCCAAATTATGATAGACAATTGATCAGTTGACCCCTTTTTGATATCTTTTAAAGGAAATGAGATAATTGAGCTCAAAGTGCAAACATATCGTAAACACTAAATAAGCGCCCTCCAACAGTTAACTTCGAGTCCAAATATCACAATTTCTGTCAGAGATATCAAAAAGCGGTTAACTGATAAAATATTGGTAATATTATGAGGAATATTTTATCAGTTGACAGATTTCCGATATCTTCCACAGGAATTGAGATAATTGAGCTTAAAGCTGACGACTTGGGTGAGCGCCAATTAAAGGAAATACGGTAGCTAGCTGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTGGACCCGCTGAAAAATCTAGATTCTCCAGAACCCCAAAAGTCAGGAGATTTGTCAAAGAAAACCCAAAAAACCCTATAAATCGGTCACCTCAAGCCTAGGAGAGGAGGAAAACGGAAAAAGAGGTGTGGTGGATGGATGGAGGGAGAAGAAGACAAATTGGCTATGTATATGTGCACACGGCCACAATTACGAAGAAGCCATGAGCAATCACCTTGGTAGCCAGAGAAGGGGCACATCTAACGGAGGAGCTTGCCAA</canonical>
            <polymorphic>CAAAATGATCAGCAAAGTGCGAGGAATCGTTTGCAATTTGATTCTTAGTTTCAGCCNNNNNNNNNNAAACTAAGAATCAAATTGCAAACGATTACTGACATTTTGCTGCTCATTTTGATCTAATTTTTAGTTCTCTGGGCCAATTTTGACAAAAGTTAATGTAAAAAATCGAACTTCTCCGTCTAGTTAGGAATATAGTAAAGTTAGATGTGCAGGTCCTCCTTTATTTCTAGCTAAATTCTCCTGGACCAGAGGCTGGATCATGGGGCTGATGATAAAGGTCTGGACCGTCCGACCCGTTCCCAACCATTTAACTTTGAACTCAATTATCTCGATTTCAGTGAGAGATATCAAAAATTTGTCAACTGATAAAATATAGGCCAAATTATGATAGACAATTGATCAGTTGACCCCTTTTTGATATCTTTTAAAGGAAATGAGATAATTGAGCTCAAAGTGCAAACATATCGTAAACACTAAATAAGCGCCCTCCAACAGTYAACTTCGAGTCCAAATATCACAATTTCTGTCAGAGATATCAAAAAGCGGTTAACTGATAAAATATTGGTAATATTATGAGGAATATTTTATCAGTTGACAGATTTCCGATATCTTCCACAGGAATTGAGATAATTGAGCTTAAAGCTGACGACTTGGGTGAGCGCCAATTAAAGGAAATACGGTAGCTAGCTGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTGGACCCGCTGAAAAATCTAGATTCTCCAGAACCCCAAAAGTCAGGAGATTTGTCAAAGAAAACCCAAAAAACCCTATAAATCGGTCACCTCAAGCCTAGGAGAGGAGGAAAACGGAAAAAGAGGTGTGGTGGATGGATGGAGGGAGAAGAAGACAAATTGGCTATGTATATGTGCACACGGCCACAATTACGAAGAAGCCATGAGCAATCACCTTGGTAGCCAGAGAAGGGGCACATCTAACGGAGGAGCTTGCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTTAAC</site>
                <isoschizomers>
                    <enzyme>BstHPI</enzyme>
                    <enzyme>HpaI</enzyme>
                    <enzyme>KspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 449 51</canonical_bands>
                <polymorphic_bands>551 449</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>404 363 92 51 45 45</canonical_bands>
                <polymorphic_bands>404 363 143 45 45</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>331 156 155 117 90 71 51 29</canonical_bands>
                <polymorphic_bands>331 156 155 122 117 90 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTAGCTAAATTCTCCTGGAC</pcr_primer_p1>
		<pcr_primer_p2>CACCGGGATACTGACTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>518</pcr_amplicon_size>
		<canonical_amplicon>TTTCTAGCTAAATTCTCCTGGACCAGAGGCTGGATCATGGGGCTGATGATAAAGGTCTGGACCGTCCGACCCGTTCCCAACCATTTAACTTTGAACTCAATTATCTCGATTTCAGTGAGAGATATCAAAAATTTGTCAACTGATAAAATATAGGCCAAATTATGATAGACAATTGATCAGTTGACCCCTTTTTGATATCTTTTAAAGGAAATGAGATAATTGAGCTCAAAGTGCAAACATATCGTAAACACTAAATAAGCGCCCTCCAACAGTTAACTTCGAGTCCAAATATCACAATTTCTGTCAGAGATATCAAAAAGCGGTTAACTGATAAAATATTGGTAATATTATGAGGAATATTTTATCAGTTGACAGATTTCCGATATCTTCCACAGGAATTGAGATAATTGAGCTTAAAGCTGACGACTTGGGTGAGCGCCAATTAAAGGAAATACGGTAGCTAGCTGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTAGCTAAATTCTCCTGGACCAGAGGCTGGATCATGGGGCTGATGATAAAGGTCTGGACCGTCCGACCCGTTCCCAACCATTTAACTTTGAACTCAATTATCTCGATTTCAGTGAGAGATATCAAAAATTTGTCAACTGATAAAATATAGGCCAAATTATGATAGACAATTGATCAGTTGACCCCTTTTTGATATCTTTTAAAGGAAATGAGATAATTGAGCTCAAAGTGCAAACATATCGTAAACACTAAATAAGCGCCCTCCAACAGTYAACTTCGAGTCCAAATATCACAATTTCTGTCAGAGATATCAAAAAGCGGTTAACTGATAAAATATTGGTAATATTATGAGGAATATTTTATCAGTTGACAGATTTCCGATATCTTCCACAGGAATTGAGATAATTGAGCTTAAAGCTGACGACTTGGGTGAGCGCCAATTAAAGGAAATACGGTAGCTAGCTGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23924</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>953542</contig_pos>
        <strand></strand>
        <context>tccaaatatc[A/T]caatttctgt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTAAACACTAAATAAGCGCCCTCCAACAGTTAACTTCGAGTCCAAATATC</left_flank>
        <right_flank>CAATTTCTGTCAGAGATATCAAAAAGCGGTTAACTGATAAAATATTGGTA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGGAATCGTTTGCAATTTGATTCTTAGTTTCAGCCNNNNNNNNNNAAACTAAGAATCAAATTGCAAACGATTACTGACATTTTGCTGCTCATTTTGATCTAATTTTTAGTTCTCTGGGCCAATTTTGACAAAAGTTAATGTAAAAAATCGAACTTCTCCGTCTAGTTAGGAATATAGTAAAGTTAGATGTGCAGGTCCTCCTTTATTTCTAGCTAAATTCTCCTGGACCAGAGGCTGGATCATGGGGCTGATGATAAAGGTCTGGACCGTCCGACCCGTTCCCAACCATTTAACTTTGAACTCAATTATCTCGATTTCAGTGAGAGATATCAAAAATTTGTCAACTGATAAAATATAGGCCAAATTATGATAGACAATTGATCAGTTGACCCCTTTTTGATATCTTTTAAAGGAAATGAGATAATTGAGCTCAAAGTGCAAACATATCGTAAACACTAAATAAGCGCCCTCCAACAGTTAACTTCGAGTCCAAATATCACAATTTCTGTCAGAGATATCAAAAAGCGGTTAACTGATAAAATATTGGTAATATTATGAGGAATATTTTATCAGTTGACAGATTTCCGATATCTTCCACAGGAATTGAGATAATTGAGCTTAAAGCTGACGACTTGGGTGAGCGCCAATTAAAGGAAATACGGTAGCTAGCTGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTGGACCCGCTGAAAAATCTAGATTCTCCAGAACCCCAAAAGTCAGGAGATTTGTCAAAGAAAACCCAAAAAACCCTATAAATCGGTCACCTCAAGCCTAGGAGAGGAGGAAAACGGAAAAAGAGGTGTGGTGGATGGATGGAGGGAGAAGAAGACAAATTGGCTATGTATATGTGCACACGGCCACAATTACGAAGAAGCCATGAGCAATCACCTTGGTAGCCAGAGAAGGGGCACATCTAACGGAGGAGCTTGCCAAGACCTGCACATCTAACTGTG</canonical>
            <polymorphic>GAGGAATCGTTTGCAATTTGATTCTTAGTTTCAGCCNNNNNNNNNNAAACTAAGAATCAAATTGCAAACGATTACTGACATTTTGCTGCTCATTTTGATCTAATTTTTAGTTCTCTGGGCCAATTTTGACAAAAGTTAATGTAAAAAATCGAACTTCTCCGTCTAGTTAGGAATATAGTAAAGTTAGATGTGCAGGTCCTCCTTTATTTCTAGCTAAATTCTCCTGGACCAGAGGCTGGATCATGGGGCTGATGATAAAGGTCTGGACCGTCCGACCCGTTCCCAACCATTTAACTTTGAACTCAATTATCTCGATTTCAGTGAGAGATATCAAAAATTTGTCAACTGATAAAATATAGGCCAAATTATGATAGACAATTGATCAGTTGACCCCTTTTTGATATCTTTTAAAGGAAATGAGATAATTGAGCTCAAAGTGCAAACATATCGTAAACACTAAATAAGCGCCCTCCAACAGTTAACTTCGAGTCCAAATATCWCAATTTCTGTCAGAGATATCAAAAAGCGGTTAACTGATAAAATATTGGTAATATTATGAGGAATATTTTATCAGTTGACAGATTTCCGATATCTTCCACAGGAATTGAGATAATTGAGCTTAAAGCTGACGACTTGGGTGAGCGCCAATTAAAGGAAATACGGTAGCTAGCTGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTGGACCCGCTGAAAAATCTAGATTCTCCAGAACCCCAAAAGTCAGGAGATTTGTCAAAGAAAACCCAAAAAACCCTATAAATCGGTCACCTCAAGCCTAGGAGAGGAGGAAAACGGAAAAAGAGGTGTGGTGGATGGATGGAGGGAGAAGAAGACAAATTGGCTATGTATATGTGCACACGGCCACAATTACGAAGAAGCCATGAGCAATCACCTTGGTAGCCAGAGAAGGGGCACATCTAACGGAGGAGCTTGCCAAGACCTGCACATCTAACTGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>192 131 116 98 86 84 44 43 42 39 31 27 23 17 12 6 3 2 2 2 0</canonical_bands>
                <polymorphic_bands>192 142 131 116 86 84 43 42 39 31 27 23 17 12 6 3 2 2 2 0</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTAGCTAAATTCTCCTGGAC</pcr_primer_p1>
		<pcr_primer_p2>CACCGGGATACTGACTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>518</pcr_amplicon_size>
		<canonical_amplicon>TTTCTAGCTAAATTCTCCTGGACCAGAGGCTGGATCATGGGGCTGATGATAAAGGTCTGGACCGTCCGACCCGTTCCCAACCATTTAACTTTGAACTCAATTATCTCGATTTCAGTGAGAGATATCAAAAATTTGTCAACTGATAAAATATAGGCCAAATTATGATAGACAATTGATCAGTTGACCCCTTTTTGATATCTTTTAAAGGAAATGAGATAATTGAGCTCAAAGTGCAAACATATCGTAAACACTAAATAAGCGCCCTCCAACAGTTAACTTCGAGTCCAAATATCACAATTTCTGTCAGAGATATCAAAAAGCGGTTAACTGATAAAATATTGGTAATATTATGAGGAATATTTTATCAGTTGACAGATTTCCGATATCTTCCACAGGAATTGAGATAATTGAGCTTAAAGCTGACGACTTGGGTGAGCGCCAATTAAAGGAAATACGGTAGCTAGCTGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTAGCTAAATTCTCCTGGACCAGAGGCTGGATCATGGGGCTGATGATAAAGGTCTGGACCGTCCGACCCGTTCCCAACCATTTAACTTTGAACTCAATTATCTCGATTTCAGTGAGAGATATCAAAAATTTGTCAACTGATAAAATATAGGCCAAATTATGATAGACAATTGATCAGTTGACCCCTTTTTGATATCTTTTAAAGGAAATGAGATAATTGAGCTCAAAGTGCAAACATATCGTAAACACTAAATAAGCGCCCTCCAACAGTTAACTTCGAGTCCAAATATCWCAATTTCTGTCAGAGATATCAAAAAGCGGTTAACTGATAAAATATTGGTAATATTATGAGGAATATTTTATCAGTTGACAGATTTCCGATATCTTCCACAGGAATTGAGATAATTGAGCTTAAAGCTGACGACTTGGGTGAGCGCCAATTAAAGGAAATACGGTAGCTAGCTGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23925</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>953592</contig_pos>
        <strand></strand>
        <context>aaatattggt[A/T]atattatgag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACAATTTCTGTCAGAGATATCAAAAAGCGGTTAACTGATAAAATATTGGT</left_flank>
        <right_flank>ATATTATGAGGAATATTTTATCAGTTGACAGATTTCCGATATCTTCCACA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAGAATCAAATTGCAAACGATTACTGACATTTTGCTGCTCATTTTGATCTAATTTTTAGTTCTCTGGGCCAATTTTGACAAAAGTTAATGTAAAAAATCGAACTTCTCCGTCTAGTTAGGAATATAGTAAAGTTAGATGTGCAGGTCCTCCTTTATTTCTAGCTAAATTCTCCTGGACCAGAGGCTGGATCATGGGGCTGATGATAAAGGTCTGGACCGTCCGACCCGTTCCCAACCATTTAACTTTGAACTCAATTATCTCGATTTCAGTGAGAGATATCAAAAATTTGTCAACTGATAAAATATAGGCCAAATTATGATAGACAATTGATCAGTTGACCCCTTTTTGATATCTTTTAAAGGAAATGAGATAATTGAGCTCAAAGTGCAAACATATCGTAAACACTAAATAAGCGCCCTCCAACAGTTAACTTCGAGTCCAAATATCACAATTTCTGTCAGAGATATCAAAAAGCGGTTAACTGATAAAATATTGGTAATATTATGAGGAATATTTTATCAGTTGACAGATTTCCGATATCTTCCACAGGAATTGAGATAATTGAGCTTAAAGCTGACGACTTGGGTGAGCGCCAATTAAAGGAAATACGGTAGCTAGCTGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTGGACCCGCTGAAAAATCTAGATTCTCCAGAACCCCAAAAGTCAGGAGATTTGTCAAAGAAAACCCAAAAAACCCTATAAATCGGTCACCTCAAGCCTAGGAGAGGAGGAAAACGGAAAAAGAGGTGTGGTGGATGGATGGAGGGAGAAGAAGACAAATTGGCTATGTATATGTGCACACGGCCACAATTACGAAGAAGCCATGAGCAATCACCTTGGTAGCCAGAGAAGGGGCACATCTAACGGAGGAGCTTGCCAAGACCTGCACATCTAACTGTGCCTTGCCCTTCTTGAAGGAATCTTGCAGAATGGCAAGTGATAAAGTGTTA</canonical>
            <polymorphic>TAAGAATCAAATTGCAAACGATTACTGACATTTTGCTGCTCATTTTGATCTAATTTTTAGTTCTCTGGGCCAATTTTGACAAAAGTTAATGTAAAAAATCGAACTTCTCCGTCTAGTTAGGAATATAGTAAAGTTAGATGTGCAGGTCCTCCTTTATTTCTAGCTAAATTCTCCTGGACCAGAGGCTGGATCATGGGGCTGATGATAAAGGTCTGGACCGTCCGACCCGTTCCCAACCATTTAACTTTGAACTCAATTATCTCGATTTCAGTGAGAGATATCAAAAATTTGTCAACTGATAAAATATAGGCCAAATTATGATAGACAATTGATCAGTTGACCCCTTTTTGATATCTTTTAAAGGAAATGAGATAATTGAGCTCAAAGTGCAAACATATCGTAAACACTAAATAAGCGCCCTCCAACAGTTAACTTCGAGTCCAAATATCACAATTTCTGTCAGAGATATCAAAAAGCGGTTAACTGATAAAATATTGGTWATATTATGAGGAATATTTTATCAGTTGACAGATTTCCGATATCTTCCACAGGAATTGAGATAATTGAGCTTAAAGCTGACGACTTGGGTGAGCGCCAATTAAAGGAAATACGGTAGCTAGCTGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTGGACCCGCTGAAAAATCTAGATTCTCCAGAACCCCAAAAGTCAGGAGATTTGTCAAAGAAAACCCAAAAAACCCTATAAATCGGTCACCTCAAGCCTAGGAGAGGAGGAAAACGGAAAAAGAGGTGTGGTGGATGGATGGAGGGAGAAGAAGACAAATTGGCTATGTATATGTGCACACGGCCACAATTACGAAGAAGCCATGAGCAATCACCTTGGTAGCCAGAGAAGGGGCACATCTAACGGAGGAGCTTGCCAAGACCTGCACATCTAACTGTGCCTTGCCCTTCTTGAAGGAATCTTGCAGAATGGCAAGTGATAAAGTGTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>493 486 12 9</canonical_bands>
                <polymorphic_bands>493 486 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTAGCTAAATTCTCCTGGAC</pcr_primer_p1>
		<pcr_primer_p2>CACCGGGATACTGACTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>518</pcr_amplicon_size>
		<canonical_amplicon>TTTCTAGCTAAATTCTCCTGGACCAGAGGCTGGATCATGGGGCTGATGATAAAGGTCTGGACCGTCCGACCCGTTCCCAACCATTTAACTTTGAACTCAATTATCTCGATTTCAGTGAGAGATATCAAAAATTTGTCAACTGATAAAATATAGGCCAAATTATGATAGACAATTGATCAGTTGACCCCTTTTTGATATCTTTTAAAGGAAATGAGATAATTGAGCTCAAAGTGCAAACATATCGTAAACACTAAATAAGCGCCCTCCAACAGTTAACTTCGAGTCCAAATATCACAATTTCTGTCAGAGATATCAAAAAGCGGTTAACTGATAAAATATTGGTAATATTATGAGGAATATTTTATCAGTTGACAGATTTCCGATATCTTCCACAGGAATTGAGATAATTGAGCTTAAAGCTGACGACTTGGGTGAGCGCCAATTAAAGGAAATACGGTAGCTAGCTGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTAGCTAAATTCTCCTGGACCAGAGGCTGGATCATGGGGCTGATGATAAAGGTCTGGACCGTCCGACCCGTTCCCAACCATTTAACTTTGAACTCAATTATCTCGATTTCAGTGAGAGATATCAAAAATTTGTCAACTGATAAAATATAGGCCAAATTATGATAGACAATTGATCAGTTGACCCCTTTTTGATATCTTTTAAAGGAAATGAGATAATTGAGCTCAAAGTGCAAACATATCGTAAACACTAAATAAGCGCCCTCCAACAGTTAACTTCGAGTCCAAATATCACAATTTCTGTCAGAGATATCAAAAAGCGGTTAACTGATAAAATATTGGTWATATTATGAGGAATATTTTATCAGTTGACAGATTTCCGATATCTTCCACAGGAATTGAGATAATTGAGCTTAAAGCTGACGACTTGGGTGAGCGCCAATTAAAGGAAATACGGTAGCTAGCTGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23926</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>953911</contig_pos>
        <strand>+</strand>
        <context>GAKGGAGGGA[A/G]AAGAAGACAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAGGAGAGGAGGAAAACGGAAAAAGAGGTGTGGTGGATGGATGGAGGGA</left_flank>
        <right_flank>AAGAAGACAAATTGGCTATGTATATGTGCACACGGCCACAATTACGAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAGACAATTGATCAGTTGACCCCTTTTTGATATCTTTTAAAGGAAATGAGATAATTGAGCTCAAAGTGCAAACATATCGTAAACACTAAATAAGCGCCCTCCAACAGTTAACTTCGAGTCCAAATATCACAATTTCTGTCAGAGATATCAAAAAGCGGTTAACTGATAAAATATTGGTAATATTATGAGGAATATTTTATCAGTTGACAGATTTCCGATATCTTCCACAGGAATTGAGATAATTGAGCTTAAAGCTGACGACTTGGGTGAGCGCCAATTAAAGGAAATACGGTAGCTAGCTGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTGGACCCGCTGAAAAATCTAGATTCTCCAGAACCCCAAAAGTCAGGAGATTTGTCAAAGAAAACCCAAAAAACCCTATAAATCGGTCACCTCAAGCCTAGGAGAGGAGGAAAACGGAAAAAGAGGTGTGGTGGATGGATGGAGGGAGAAGAAGACAAATTGGCTATGTATATGTGCACACGGCCACAATTACGAAGAAGCCATGAGCAATCACCTTGGTAGCCAGAGAAGGGGCACATCTAACGGAGGAGCTTGCCAAGACCTGCACATCTAACTGTGCCTTGCCCTTCTTGAAGGAATCTTGCAGAATGGCAAGTGATAAAGTGTTATCAGTCAAAAAAATAACTTCAGAGGCGCCGCCGCGATCCTATTTCCGCTGAAATGTTCTATAGAAAAATTACAGTATGACGAAACCAATGATATAGCAAATAGAGCGGCGCAAGAGCGCACTATCGTATCTTTTTAGTCTATTTATCGATTTTTCTATGTTTTTTCACCATTTTTTCGCGATTTACTACATCGAAAAACGGTGAAAATCGTCGAAAAATTTATTGAAAGATGTCTTAAAGGCGCAATTGCGAATTACCGTATTTATCGATTTTCTCGATTTTTCAACGATTTTTCATCGTTTTTTCAATGGTTTTCATG</canonical>
            <polymorphic>GATAGACAATTGATCAGTTGACCCCTTTTTGATATCTTTTAAAGGAAATGAGATAATTGAGCTCAAAGTGCAAACATATCGTAAACACTAAATAAGCGCCCTCCAACAGTTAACTTCGAGTCCAAATATCACAATTTCTGTCAGAGATATCAAAAAGCGGTTAACTGATAAAATATTGGTAATATTATGAGGAATATTTTATCAGTTGACAGATTTCCGATATCTTCCACAGGAATTGAGATAATTGAGCTTAAAGCTGACGACTTGGGTGAGCGCCAATTAAAGGAAATACGGTAGCTAGCTGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTGGACCCGCTGAAAAATCTAGATTCTCCAGAACCCCAAAAGTCAGGAGATTTGTCAAAGAAAACCCAAAAAACCCTATAAATCGGTCACCTCAAGCCTAGGAGAGGAGGAAAACGGAAAAAGAGGTGTGGTGGATGGATGGAGGGARAAGAAGACAAATTGGCTATGTATATGTGCACACGGCCACAATTACGAAGAAGCCATGAGCAATCACCTTGGTAGCCAGAGAAGGGGCACATCTAACGGAGGAGCTTGCCAAGACCTGCACATCTAACTGTGCCTTGCCCTTCTTGAAGGAATCTTGCAGAATGGCAAGTGATAAAGTGTTATCAGTCAAAAAAATAACTTCAGAGGCGCCGCCGCGATCCTATTTCCGCTGAAATGTTCTATAGAAAAATTACAGTATGACGAAACCAATGATATAGCAAATAGAGCGGCGCAAGAGCGCACTATCGTATCTTTTTAGTCTATTTATCGATTTTTCTATGTTTTTTCACCATTTTTTCGCGATTTACTACATCGAAAAACGGTGAAAATCGTCGAAAAATTTATTGAAAGATGTCTTAAAGGCGCAATTGCGAATTACCGTATTTATCGATTTTCTCGATTTTTCAACGATTTTTCATCGTTTTTTCAATGGTTTTCATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAACATCTAGATTCTCAAACT</pcr_primer_p1>
		<pcr_primer_p2>ATGGCTTCTTCGTAATTGTG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTGGACCCGCTGAAAAATCTAGATTCTCCAGAACCCCAAAAGTCAGGAGATTTGTCAAAGAAAACCCAAAAAACCCTATAAATCGGTCACCTCAAGCCTAGGAGAGGAGGAAAACGGAAAAAGAGGTGTGGTGGATGGATGGAGGGAGAAGAAGACAAATTGGCTATGTATATGTGCACACGGCCACAATTACGAAGAAGCCAT</canonical_amplicon>
		<polymorphic_amplicon>TGGAACATCTAGATTCTCAAACTATTTGGACTAAATTAGTCAGTATCCCGGTGGACCCGCTGAAAAATCTAGATTCTCCAGAACCCCAAAAGTCAGGAGATTTGTCAAAGAAAACCCAAAAAACCCTATAAATCGGTCACCTCAAGCCTAGGAGAGGAGGAAAACGGAAAAAGAGGTGTGGTGGATGGATGGAGGGARAAGAAGACAAATTGGCTATGTATATGTGCACACGGCCACAATTACGAAGAAGCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23927</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>994952</contig_pos>
        <strand></strand>
        <context>gctcaaagtt[A/T]aaaAAAACCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCTCTATTTGATATCATTCCCAGGAAATGAGATATACGGGCTCAAAGTT</left_flank>
        <right_flank>AAAAAAACCTTTATATCGATTCTTCTTCTGCTCGGTGTTCTGATCGAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCTCCACATATCGTGTTGACTGTCTTTGAGTGGTCCTTGGGTGAGAATGTAGAGGGGTTTGGAGCCTTTGAGGTAGTTGGCATGGATGTAGTCTCCCGGCAGTCCGTCTTTCAGAATCACACGTGTCTTATCGTTACAGACAACATCTGGAACACACTTGTGTTGGGGTTGATTATTTTGATTTCTAGGAAAAATATCAAAAAAGTGTCAATTAGAAAAATATAGAAAATAAAATTCTACACATTTTATTAGTTGACAACTTTTTAATATCTGTCTCAAGAAGTGAGATAATTGGTTTCAAATAGGACTACCGTAAACGCACCAATCCCCCTCCCCCCTTTCGCATGGTCAACTTTTAGCTCAATTATCTCAGTTCTCGTAAAAGATATCTAAAATTTGTTAACTAACAAAATGTTGCTGATAATCTGATAAACATTTTGCTAATTGATCTCTATTTGATATCATTCCCAGGAAATGAGATATACGGGCTCAAAGTTAAAAAAAACCTTTATATCGATTCTTCTTCTGCTCGGTGTTCTGATCGAAAATCGTGCGTTCGTAATAGCCAACCGGAACAAATGGGACCAACGTCTCAATGTACTCCTTGATCAGCCCCTCCACGCCAGATGATAGGATACTCTGCAAGTGCGCTCTGTTGGACATATAGGTAGATCAAACTTACGGCTGCGAAACTCTCATAAGCTTGTGTTTGAAGTGGTATGGTTGGAGGGTTCCGGATTGATGCAAGCGTCGATTCTGAATGTGAAACTGTCTTGATCAAAGATGTTGATCGCCAAATTTGCGTTTTCCGGCAATCCGCCGCCTGGAATCAAAAGAACGAAATTGCAACTCGTTTCGGGTTACTGTATGAATCCCAACATTGAGCTCAATTATCTCGATACTTGTAAGAGATATCTAAAAACTTTCAACTGATAAAATGTAGCTGATTTTATGGTAAACATTTTATCAGTTGACAAATTTTTTGTATCTTTTAAAGG</canonical>
            <polymorphic>ATTCTCCACATATCGTGTTGACTGTCTTTGAGTGGTCCTTGGGTGAGAATGTAGAGGGGTTTGGAGCCTTTGAGGTAGTTGGCATGGATGTAGTCTCCCGGCAGTCCGTCTTTCAGAATCACACGTGTCTTATCGTTACAGACAACATCTGGAACACACTTGTGTTGGGGTTGATTATTTTGATTTCTAGGAAAAATATCAAAAAAGTGTCAATTAGAAAAATATAGAAAATAAAATTCTACACATTTTATTAGTTGACAACTTTTTAATATCTGTCTCAAGAAGTGAGATAATTGGTTTCAAATAGGACTACCGTAAACGCACCAATCCCCCTCCCCCCTTTCGCATGGTCAACTTTTAGCTCAATTATCTCAGTTCTCGTAAAAGATATCTAAAATTTGTTAACTAACAAAATGTTGCTGATAATCTGATAAACATTTTGCTAATTGATCTCTATTTGATATCATTCCCAGGAAATGAGATATACGGGCTCAAAGTTWAAAAAAACCTTTATATCGATTCTTCTTCTGCTCGGTGTTCTGATCGAAAATCGTGCGTTCGTAATAGCCAACCGGAACAAATGGGACCAACGTCTCAATGTACTCCTTGATCAGCCCCTCCACGCCAGATGATAGGATACTCTGCAAGTGCGCTCTGTTGGACATATAGGTAGATCAAACTTACGGCTGCGAAACTCTCATAAGCTTGTGTTTGAAGTGGTATGGTTGGAGGGTTCCGGATTGATGCAAGCGTCGATTCTGAATGTGAAACTGTCTTGATCAAAGATGTTGATCGCCAAATTTGCGTTTTCCGGCAATCCGCCGCCTGGAATCAAAAGAACGAAATTGCAACTCGTTTCGGGTTACTGTATGAATCCCAACATTGAGCTCAATTATCTCGATACTTGTAAGAGATATCTAAAAACTTTCAACTGATAAAATGTAGCTGATTTTATGGTAAACATTTTATCAGTTGACAAATTTTTTGTATCTTTTAAAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>496 266 136 96 6</canonical_bands>
                <polymorphic_bands>592 266 136 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAACATCTGGAACACACTTG</pcr_primer_p1>
		<pcr_primer_p2>TATTACGAACGCACGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>ACAACATCTGGAACACACTTGTGTTGGGGTTGATTATTTTGATTTCTAGGAAAAATATCAAAAAAGTGTCAATTAGAAAAATATAGAAAATAAAATTCTACACATTTTATTAGTTGACAACTTTTTAATATCTGTCTCAAGAAGTGAGATAATTGGTTTCAAATAGGACTACCGTAAACGCACCAATCCCCCTCCCCCCTTTCGCATGGTCAACTTTTAGCTCAATTATCTCAGTTCTCGTAAAAGATATCTAAAATTTGTTAACTAACAAAATGTTGCTGATAATCTGATAAACATTTTGCTAATTGATCTCTATTTGATATCATTCCCAGGAAATGAGATATACGGGCTCAAAGTTAAAAAAAACCTTTATATCGATTCTTCTTCTGCTCGGTGTTCTGATCGAAAATCGTGCGTTCGTAATA</canonical_amplicon>
		<polymorphic_amplicon>ACAACATCTGGAACACACTTGTGTTGGGGTTGATTATTTTGATTTCTAGGAAAAATATCAAAAAAGTGTCAATTAGAAAAATATAGAAAATAAAATTCTACACATTTTATTAGTTGACAACTTTTTAATATCTGTCTCAAGAAGTGAGATAATTGGTTTCAAATAGGACTACCGTAAACGCACCAATCCCCCTCCCCCCTTTCGCATGGTCAACTTTTAGCTCAATTATCTCAGTTCTCGTAAAAGATATCTAAAATTTGTTAACTAACAAAATGTTGCTGATAATCTGATAAACATTTTGCTAATTGATCTCTATTTGATATCATTCCCAGGAAATGAGATATACGGGCTCAAAGTTWAAAAAAACCTTTATATCGATTCTTCTTCTGCTCGGTGTTCTGATCGAAAATCGTGCGTTCGTAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23928</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>995292</contig_pos>
        <strand></strand>
        <context>AATCAAAAGA[A/G]CGAAATTGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATCGCCAAATTTGCGTTTTCCGGCAATCCGCCGCCTGGAATCAAAAGA</left_flank>
        <right_flank>CGAAATTGCAACTCGTTTCGGGTTACTGTATGAATCCCAACATTGAGCTC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGCATGGTCAACTTTTAGCTCAATTATCTCAGTTCTCGTAAAAGATATCTAAAATTTGTTAACTAACAAAATGTTGCTGATAATCTGATAAACATTTTGCTAATTGATCTCTATTTGATATCATTCCCAGGAAATGAGATATACGGGCTCAAAGTTAAAAAAAACCTTTATATCGATTCTTCTTCTGCTCGGTGTTCTGATCGAAAATCGTGCGTTCGTAATAGCCAACCGGAACAAATGGGACCAACGTCTCAATGTACTCCTTGATCAGCCCCTCCACGCCAGATGATAGGATACTCTGCAAGTGCGCTCTGTTGGACATATAGGTAGATCAAACTTACGGCTGCGAAACTCTCATAAGCTTGTGTTTGAAGTGGTATGGTTGGAGGGTTCCGGATTGATGCAAGCGTCGATTCTGAATGTGAAACTGTCTTGATCAAAGATGTTGATCGCCAAATTTGCGTTTTCCGGCAATCCGCCGCCTGGAATCAAAAGAACGAAATTGCAACTCGTTTCGGGTTACTGTATGAATCCCAACATTGAGCTCAATTATCTCGATACTTGTAAGAGATATCTAAAAACTTTCAACTGATAAAATGTAGCTGATTTTATGGTAAACATTTTATCAGTTGACAAATTTTTTGTATCTTTTAAAGGAACCGAGATAATTAAGCTCAAAGTTTGCATATGGCGCCCTTCAACCTACTTTTCTTCTCCCTTTTACTATTCTGATGTTTAAAACCACTCTTCTTTTTGGTCTTCATCGAACGCATACTCTTGTTTTTCTCGGCTCCCTTCTTCTTCACTTTTGTCGACGTTTCCTGTTGTTTCTTATTTTTTGTCGCATCTTTCGAATTGCTTTTCTTTCGCAGTTTCTGAAAAAATTTCAACGAATTAGGGTTTCCATTTCGGTCGTTGAAAATTGGTGACTTTTAATACTTTTTATAAAATTTTTATATCAATCTGATCCCCTTAAAATTTCCTACAAAACTAGCCA</canonical>
            <polymorphic>TTTCGCATGGTCAACTTTTAGCTCAATTATCTCAGTTCTCGTAAAAGATATCTAAAATTTGTTAACTAACAAAATGTTGCTGATAATCTGATAAACATTTTGCTAATTGATCTCTATTTGATATCATTCCCAGGAAATGAGATATACGGGCTCAAAGTTAAAAAAAACCTTTATATCGATTCTTCTTCTGCTCGGTGTTCTGATCGAAAATCGTGCGTTCGTAATAGCCAACCGGAACAAATGGGACCAACGTCTCAATGTACTCCTTGATCAGCCCCTCCACGCCAGATGATAGGATACTCTGCAAGTGCGCTCTGTTGGACATATAGGTAGATCAAACTTACGGCTGCGAAACTCTCATAAGCTTGTGTTTGAAGTGGTATGGTTGGAGGGTTCCGGATTGATGCAAGCGTCGATTCTGAATGTGAAACTGTCTTGATCAAAGATGTTGATCGCCAAATTTGCGTTTTCCGGCAATCCGCCGCCTGGAATCAAAAGARCGAAATTGCAACTCGTTTCGGGTTACTGTATGAATCCCAACATTGAGCTCAATTATCTCGATACTTGTAAGAGATATCTAAAAACTTTCAACTGATAAAATGTAGCTGATTTTATGGTAAACATTTTATCAGTTGACAAATTTTTTGTATCTTTTAAAGGAACCGAGATAATTAAGCTCAAAGTTTGCATATGGCGCCCTTCAACCTACTTTTCTTCTCCCTTTTACTATTCTGATGTTTAAAACCACTCTTCTTTTTGGTCTTCATCGAACGCATACTCTTGTTTTTCTCGGCTCCCTTCTTCTTCACTTTTGTCGACGTTTCCTGTTGTTTCTTATTTTTTGTCGCATCTTTCGAATTGCTTTTCTTTCGCAGTTTCTGAAAAAATTTCAACGAATTAGGGTTTCCATTTCGGTCGTTGAAAATTGGTGACTTTTAATACTTTTTATAAAATTTTTATATCAATCTGATCCCCTTAAAATTTCCTACAAAACTAGCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTGTCTTGATCAAAGATGTTG</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGGAGAAGAAAAGTAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>296</pcr_amplicon_size>
		<canonical_amplicon>ACTGTCTTGATCAAAGATGTTGATCGCCAAATTTGCGTTTTCCGGCAATCCGCCGCCTGGAATCAAAAGAACGAAATTGCAACTCGTTTCGGGTTACTGTATGAATCCCAACATTGAGCTCAATTATCTCGATACTTGTAAGAGATATCTAAAAACTTTCAACTGATAAAATGTAGCTGATTTTATGGTAAACATTTTATCAGTTGACAAATTTTTTGTATCTTTTAAAGGAACCGAGATAATTAAGCTCAAAGTTTGCATATGGCGCCCTTCAACCTACTTTTCTTCTCCCTTTT</canonical_amplicon>
		<polymorphic_amplicon>ACTGTCTTGATCAAAGATGTTGATCGCCAAATTTGCGTTTTCCGGCAATCCGCCGCCTGGAATCAAAAGARCGAAATTGCAACTCGTTTCGGGTTACTGTATGAATCCCAACATTGAGCTCAATTATCTCGATACTTGTAAGAGATATCTAAAAACTTTCAACTGATAAAATGTAGCTGATTTTATGGTAAACATTTTATCAGTTGACAAATTTTTTGTATCTTTTAAAGGAACCGAGATAATTAAGCTCAAAGTTTGCATATGGCGCCCTTCAACCTACTTTTCTTCTCCCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23929</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>995321</contig_pos>
        <strand></strand>
        <context>CGGGTTACTG[T/A]ATGAATCCca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CCGCCGCCTGGAATCAAAAGAACGAAATTGCAACTCGTTTCGGGTTACTG</left_flank>
        <right_flank>ATGAATCCCAACATTGAGCTCAATTATCTCGATACTTGTAAGAGATATCT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCAGTTCTCGTAAAAGATATCTAAAATTTGTTAACTAACAAAATGTTGCTGATAATCTGATAAACATTTTGCTAATTGATCTCTATTTGATATCATTCCCAGGAAATGAGATATACGGGCTCAAAGTTAAAAAAAACCTTTATATCGATTCTTCTTCTGCTCGGTGTTCTGATCGAAAATCGTGCGTTCGTAATAGCCAACCGGAACAAATGGGACCAACGTCTCAATGTACTCCTTGATCAGCCCCTCCACGCCAGATGATAGGATACTCTGCAAGTGCGCTCTGTTGGACATATAGGTAGATCAAACTTACGGCTGCGAAACTCTCATAAGCTTGTGTTTGAAGTGGTATGGTTGGAGGGTTCCGGATTGATGCAAGCGTCGATTCTGAATGTGAAACTGTCTTGATCAAAGATGTTGATCGCCAAATTTGCGTTTTCCGGCAATCCGCCGCCTGGAATCAAAAGAACGAAATTGCAACTCGTTTCGGGTTACTGTATGAATCCCAACATTGAGCTCAATTATCTCGATACTTGTAAGAGATATCTAAAAACTTTCAACTGATAAAATGTAGCTGATTTTATGGTAAACATTTTATCAGTTGACAAATTTTTTGTATCTTTTAAAGGAACCGAGATAATTAAGCTCAAAGTTTGCATATGGCGCCCTTCAACCTACTTTTCTTCTCCCTTTTACTATTCTGATGTTTAAAACCACTCTTCTTTTTGGTCTTCATCGAACGCATACTCTTGTTTTTCTCGGCTCCCTTCTTCTTCACTTTTGTCGACGTTTCCTGTTGTTTCTTATTTTTTGTCGCATCTTTCGAATTGCTTTTCTTTCGCAGTTTCTGAAAAAATTTCAACGAATTAGGGTTTCCATTTCGGTCGTTGAAAATTGGTGACTTTTAATACTTTTTATAAAATTTTTATATCAATCTGATCCCCTTAAAATTTCCTACAAAACTAGCCAAAAATCAACTTTCTAGCTAACTATTAAAG</canonical>
            <polymorphic>TCTCAGTTCTCGTAAAAGATATCTAAAATTTGTTAACTAACAAAATGTTGCTGATAATCTGATAAACATTTTGCTAATTGATCTCTATTTGATATCATTCCCAGGAAATGAGATATACGGGCTCAAAGTTAAAAAAAACCTTTATATCGATTCTTCTTCTGCTCGGTGTTCTGATCGAAAATCGTGCGTTCGTAATAGCCAACCGGAACAAATGGGACCAACGTCTCAATGTACTCCTTGATCAGCCCCTCCACGCCAGATGATAGGATACTCTGCAAGTGCGCTCTGTTGGACATATAGGTAGATCAAACTTACGGCTGCGAAACTCTCATAAGCTTGTGTTTGAAGTGGTATGGTTGGAGGGTTCCGGATTGATGCAAGCGTCGATTCTGAATGTGAAACTGTCTTGATCAAAGATGTTGATCGCCAAATTTGCGTTTTCCGGCAATCCGCCGCCTGGAATCAAAAGAACGAAATTGCAACTCGTTTCGGGTTACTGWATGAATCCCAACATTGAGCTCAATTATCTCGATACTTGTAAGAGATATCTAAAAACTTTCAACTGATAAAATGTAGCTGATTTTATGGTAAACATTTTATCAGTTGACAAATTTTTTGTATCTTTTAAAGGAACCGAGATAATTAAGCTCAAAGTTTGCATATGGCGCCCTTCAACCTACTTTTCTTCTCCCTTTTACTATTCTGATGTTTAAAACCACTCTTCTTTTTGGTCTTCATCGAACGCATACTCTTGTTTTTCTCGGCTCCCTTCTTCTTCACTTTTGTCGACGTTTCCTGTTGTTTCTTATTTTTTGTCGCATCTTTCGAATTGCTTTTCTTTCGCAGTTTCTGAAAAAATTTCAACGAATTAGGGTTTCCATTTCGGTCGTTGAAAATTGGTGACTTTTAATACTTTTTATAAAATTTTTATATCAATCTGATCCCCTTAAAATTTCCTACAAAACTAGCCAAAAATCAACTTTCTAGCTAACTATTAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>502 403 95</canonical_bands>
                <polymorphic_bands>597 403</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTGTCTTGATCAAAGATGTTG</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGGAGAAGAAAAGTAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>296</pcr_amplicon_size>
		<canonical_amplicon>ACTGTCTTGATCAAAGATGTTGATCGCCAAATTTGCGTTTTCCGGCAATCCGCCGCCTGGAATCAAAAGAACGAAATTGCAACTCGTTTCGGGTTACTGTATGAATCCCAACATTGAGCTCAATTATCTCGATACTTGTAAGAGATATCTAAAAACTTTCAACTGATAAAATGTAGCTGATTTTATGGTAAACATTTTATCAGTTGACAAATTTTTTGTATCTTTTAAAGGAACCGAGATAATTAAGCTCAAAGTTTGCATATGGCGCCCTTCAACCTACTTTTCTTCTCCCTTTT</canonical_amplicon>
		<polymorphic_amplicon>ACTGTCTTGATCAAAGATGTTGATCGCCAAATTTGCGTTTTCCGGCAATCCGCCGCCTGGAATCAAAAGAACGAAATTGCAACTCGTTTCGGGTTACTGWATGAATCCCAACATTGAGCTCAATTATCTCGATACTTGTAAGAGATATCTAAAAACTTTCAACTGATAAAATGTAGCTGATTTTATGGTAAACATTTTATCAGTTGACAAATTTTTTGTATCTTTTAAAGGAACCGAGATAATTAAGCTCAAAGTTTGCATATGGCGCCCTTCAACCTACTTTTCTTCTCCCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23930</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>995440</contig_pos>
        <strand></strand>
        <context>aaattttttg[T/C]atcttttaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAATGTAGCTGATTTTATGGTAAACATTTTATCAGTTGACAAATTTTTTG</left_flank>
        <right_flank>ATCTTTTAAAGGAACCGAGATAATTAAGCTCAAAGTTTGCATATGGCGCC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTCAAAGTTAAAAAAAACCTTTATATCGATTCTTCTTCTGCTCGGTGTTCTGATCGAAAATCGTGCGTTCGTAATAGCCAACCGGAACAAATGGGACCAACGTCTCAATGTACTCCTTGATCAGCCCCTCCACGCCAGATGATAGGATACTCTGCAAGTGCGCTCTGTTGGACATATAGGTAGATCAAACTTACGGCTGCGAAACTCTCATAAGCTTGTGTTTGAAGTGGTATGGTTGGAGGGTTCCGGATTGATGCAAGCGTCGATTCTGAATGTGAAACTGTCTTGATCAAAGATGTTGATCGCCAAATTTGCGTTTTCCGGCAATCCGCCGCCTGGAATCAAAAGAACGAAATTGCAACTCGTTTCGGGTTACTGTATGAATCCCAACATTGAGCTCAATTATCTCGATACTTGTAAGAGATATCTAAAAACTTTCAACTGATAAAATGTAGCTGATTTTATGGTAAACATTTTATCAGTTGACAAATTTTTTGTATCTTTTAAAGGAACCGAGATAATTAAGCTCAAAGTTTGCATATGGCGCCCTTCAACCTACTTTTCTTCTCCCTTTTACTATTCTGATGTTTAAAACCACTCTTCTTTTTGGTCTTCATCGAACGCATACTCTTGTTTTTCTCGGCTCCCTTCTTCTTCACTTTTGTCGACGTTTCCTGTTGTTTCTTATTTTTTGTCGCATCTTTCGAATTGCTTTTCTTTCGCAGTTTCTGAAAAAATTTCAACGAATTAGGGTTTCCATTTCGGTCGTTGAAAATTGGTGACTTTTAATACTTTTTATAAAATTTTTATATCAATCTGATCCCCTTAAAATTTCCTACAAAACTAGCCAAAAATCAACTTTCTAGCTAACTATTAAAGCGAGTTATGCGCCTTTGAAGTTTGGCGAGAGCGCAGAGAAACGAGTGTCTGCGTCTCTGCCTTATCTCAGCTCAAAATGGTCCGTTTTCAATGATTTCCGGCTTGTTTTAAAGGGAAAA</canonical>
            <polymorphic>GGCTCAAAGTTAAAAAAAACCTTTATATCGATTCTTCTTCTGCTCGGTGTTCTGATCGAAAATCGTGCGTTCGTAATAGCCAACCGGAACAAATGGGACCAACGTCTCAATGTACTCCTTGATCAGCCCCTCCACGCCAGATGATAGGATACTCTGCAAGTGCGCTCTGTTGGACATATAGGTAGATCAAACTTACGGCTGCGAAACTCTCATAAGCTTGTGTTTGAAGTGGTATGGTTGGAGGGTTCCGGATTGATGCAAGCGTCGATTCTGAATGTGAAACTGTCTTGATCAAAGATGTTGATCGCCAAATTTGCGTTTTCCGGCAATCCGCCGCCTGGAATCAAAAGAACGAAATTGCAACTCGTTTCGGGTTACTGTATGAATCCCAACATTGAGCTCAATTATCTCGATACTTGTAAGAGATATCTAAAAACTTTCAACTGATAAAATGTAGCTGATTTTATGGTAAACATTTTATCAGTTGACAAATTTTTTGYATCTTTTAAAGGAACCGAGATAATTAAGCTCAAAGTTTGCATATGGCGCCCTTCAACCTACTTTTCTTCTCCCTTTTACTATTCTGATGTTTAAAACCACTCTTCTTTTTGGTCTTCATCGAACGCATACTCTTGTTTTTCTCGGCTCCCTTCTTCTTCACTTTTGTCGACGTTTCCTGTTGTTTCTTATTTTTTGTCGCATCTTTCGAATTGCTTTTCTTTCGCAGTTTCTGAAAAAATTTCAACGAATTAGGGTTTCCATTTCGGTCGTTGAAAATTGGTGACTTTTAATACTTTTTATAAAATTTTTATATCAATCTGATCCCCTTAAAATTTCCTACAAAACTAGCCAAAAATCAACTTTCTAGCTAACTATTAAAGCGAGTTATGCGCCTTTGAAGTTTGGCGAGAGCGCAGAGAAACGAGTGTCTGCGTCTCTGCCTTATCTCAGCTCAAAATGGTCCGTTTTCAATGATTTCCGGCTTGTTTTAAAGGGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTGTCTTGATCAAAGATGTTG</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGGAGAAGAAAAGTAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>296</pcr_amplicon_size>
		<canonical_amplicon>ACTGTCTTGATCAAAGATGTTGATCGCCAAATTTGCGTTTTCCGGCAATCCGCCGCCTGGAATCAAAAGAACGAAATTGCAACTCGTTTCGGGTTACTGTATGAATCCCAACATTGAGCTCAATTATCTCGATACTTGTAAGAGATATCTAAAAACTTTCAACTGATAAAATGTAGCTGATTTTATGGTAAACATTTTATCAGTTGACAAATTTTTTGTATCTTTTAAAGGAACCGAGATAATTAAGCTCAAAGTTTGCATATGGCGCCCTTCAACCTACTTTTCTTCTCCCTTTT</canonical_amplicon>
		<polymorphic_amplicon>ACTGTCTTGATCAAAGATGTTGATCGCCAAATTTGCGTTTTCCGGCAATCCGCCGCCTGGAATCAAAAGAACGAAATTGCAACTCGTTTCGGGTTACTGTATGAATCCCAACATTGAGCTCAATTATCTCGATACTTGTAAGAGATATCTAAAAACTTTCAACTGATAAAATGTAGCTGATTTTATGGTAAACATTTTATCAGTTGACAAATTTTTTGYATCTTTTAAAGGAACCGAGATAATTAAGCTCAAAGTTTGCATATGGCGCCCTTCAACCTACTTTTCTTCTCCCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23931</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>995521</contig_pos>
        <strand></strand>
        <context>CCCTTTTACT[A/C]TTCTGATGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAAAGTTTGCATATGGCGCCCTTCAACCTACTTTTCTTCTCCCTTTTACT</left_flank>
        <right_flank>TTCTGATGTTTAAAACCACTCTTCTTTTTGGTCTTCATCGAACGCATACT</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCGGAACAAATGGGACCAACGTCTCAATGTACTCCTTGATCAGCCCCTCCACGCCAGATGATAGGATACTCTGCAAGTGCGCTCTGTTGGACATATAGGTAGATCAAACTTACGGCTGCGAAACTCTCATAAGCTTGTGTTTGAAGTGGTATGGTTGGAGGGTTCCGGATTGATGCAAGCGTCGATTCTGAATGTGAAACTGTCTTGATCAAAGATGTTGATCGCCAAATTTGCGTTTTCCGGCAATCCGCCGCCTGGAATCAAAAGAACGAAATTGCAACTCGTTTCGGGTTACTGTATGAATCCCAACATTGAGCTCAATTATCTCGATACTTGTAAGAGATATCTAAAAACTTTCAACTGATAAAATGTAGCTGATTTTATGGTAAACATTTTATCAGTTGACAAATTTTTTGTATCTTTTAAAGGAACCGAGATAATTAAGCTCAAAGTTTGCATATGGCGCCCTTCAACCTACTTTTCTTCTCCCTTTTACTATTCTGATGTTTAAAACCACTCTTCTTTTTGGTCTTCATCGAACGCATACTCTTGTTTTTCTCGGCTCCCTTCTTCTTCACTTTTGTCGACGTTTCCTGTTGTTTCTTATTTTTTGTCGCATCTTTCGAATTGCTTTTCTTTCGCAGTTTCTGAAAAAATTTCAACGAATTAGGGTTTCCATTTCGGTCGTTGAAAATTGGTGACTTTTAATACTTTTTATAAAATTTTTATATCAATCTGATCCCCTTAAAATTTCCTACAAAACTAGCCAAAAATCAACTTTCTAGCTAACTATTAAAGCGAGTTATGCGCCTTTGAAGTTTGGCGAGAGCGCAGAGAAACGAGTGTCTGCGTCTCTGCCTTATCTCAGCTCAAAATGGTCCGTTTTCAATGATTTCCGGCTTGTTTTAAAGGGAAAAATTTGGAGAATTGAAAAATACAAATTTTGACTTTCTAATTTTTCAGGCCTCACAAAACAATTTCTCTATCCAACCTGAGTG</canonical>
            <polymorphic>AACCGGAACAAATGGGACCAACGTCTCAATGTACTCCTTGATCAGCCCCTCCACGCCAGATGATAGGATACTCTGCAAGTGCGCTCTGTTGGACATATAGGTAGATCAAACTTACGGCTGCGAAACTCTCATAAGCTTGTGTTTGAAGTGGTATGGTTGGAGGGTTCCGGATTGATGCAAGCGTCGATTCTGAATGTGAAACTGTCTTGATCAAAGATGTTGATCGCCAAATTTGCGTTTTCCGGCAATCCGCCGCCTGGAATCAAAAGAACGAAATTGCAACTCGTTTCGGGTTACTGTATGAATCCCAACATTGAGCTCAATTATCTCGATACTTGTAAGAGATATCTAAAAACTTTCAACTGATAAAATGTAGCTGATTTTATGGTAAACATTTTATCAGTTGACAAATTTTTTGTATCTTTTAAAGGAACCGAGATAATTAAGCTCAAAGTTTGCATATGGCGCCCTTCAACCTACTTTTCTTCTCCCTTTTACTMTTCTGATGTTTAAAACCACTCTTCTTTTTGGTCTTCATCGAACGCATACTCTTGTTTTTCTCGGCTCCCTTCTTCTTCACTTTTGTCGACGTTTCCTGTTGTTTCTTATTTTTTGTCGCATCTTTCGAATTGCTTTTCTTTCGCAGTTTCTGAAAAAATTTCAACGAATTAGGGTTTCCATTTCGGTCGTTGAAAATTGGTGACTTTTAATACTTTTTATAAAATTTTTATATCAATCTGATCCCCTTAAAATTTCCTACAAAACTAGCCAAAAATCAACTTTCTAGCTAACTATTAAAGCGAGTTATGCGCCTTTGAAGTTTGGCGAGAGCGCAGAGAAACGAGTGTCTGCGTCTCTGCCTTATCTCAGCTCAAAATGGTCCGTTTTCAATGATTTCCGGCTTGTTTTAAAGGGAAAAATTTGGAGAATTGAAAAATACAAATTTTGACTTTCTAATTTTTCAGGCCTCACAAAACAATTTCTCTATCCAACCTGAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTGTCTTGATCAAAGATGTTG</pcr_primer_p1>
		<pcr_primer_p2>AGAGTATGCGTTCGATGAAG</pcr_primer_p2>
		<pcr_amplicon_size>352</pcr_amplicon_size>
		<canonical_amplicon>ACTGTCTTGATCAAAGATGTTGATCGCCAAATTTGCGTTTTCCGGCAATCCGCCGCCTGGAATCAAAAGAACGAAATTGCAACTCGTTTCGGGTTACTGTATGAATCCCAACATTGAGCTCAATTATCTCGATACTTGTAAGAGATATCTAAAAACTTTCAACTGATAAAATGTAGCTGATTTTATGGTAAACATTTTATCAGTTGACAAATTTTTTGTATCTTTTAAAGGAACCGAGATAATTAAGCTCAAAGTTTGCATATGGCGCCCTTCAACCTACTTTTCTTCTCCCTTTTACTATTCTGATGTTTAAAACCACTCTTCTTTTTGGTCTTCATCGAACGCATACTCT</canonical_amplicon>
		<polymorphic_amplicon>ACTGTCTTGATCAAAGATGTTGATCGCCAAATTTGCGTTTTCCGGCAATCCGCCGCCTGGAATCAAAAGAACGAAATTGCAACTCGTTTCGGGTTACTGTATGAATCCCAACATTGAGCTCAATTATCTCGATACTTGTAAGAGATATCTAAAAACTTTCAACTGATAAAATGTAGCTGATTTTATGGTAAACATTTTATCAGTTGACAAATTTTTTGTATCTTTTAAAGGAACCGAGATAATTAAGCTCAAAGTTTGCATATGGCGCCCTTCAACCTACTTTTCTTCTCCCTTTTACTMTTCTGATGTTTAAAACCACTCTTCTTTTTGGTCTTCATCGAACGCATACTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23932</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1004635</contig_pos>
        <strand>+</strand>
        <context>TTTAGGTGAA[A/G]GAGGAGGAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGCGAGTTCCTCCTGGAAATATTTGAATTTCGTATAGGTTTTAGGTGAA</left_flank>
        <right_flank>GAGGAGGAGGCCATCTGGAGATTATTGGGCAATTTAAGCTCATCCTTTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCGGATCATAGAATTATTATTAATGAAGGGGAGGGAGCACAAAAATAGCGATTTTTCGATTTATTACAAATTCTATAGTCTCAAAAAAGGTAGTTTCTACACAATTCCATTGCAAAAAAGGGTCTAAAAACAAGAAGAATTTTATAAGAGAAGTTGCTTTTTTTGGATGTGGGGGTCAAAAGATAACAATTAGGGAGCACAGGGGAAGAAAGAGCATGTAGATAAGGGGACTTCCTGGAGGATATGGATTTAGAAGTCAGAAGCACGGGCGCGCGATGGAGATCTGATGACGGCGGCCGATGCGGAGCTCTGGAGTCCTGGAGCAACCGAGGCGGAGGCACGAGACTTTGAGCGCATCTTGGAGAGCGAGTTCTCGGCTTGATCGGCACGCTCCTCGGCGTCCTCGAGTTGATGGGTGAGTTGCTTGTACTTTTGGAGGTTCAAGTTGGCGAGTTCCTCCTGGAAATATTTGAATTTCGTATAGGTTTTAGGTGAAAGAGGAGGAGGCCATCTGGAGATTATTGGGCAATTTAAGCTCATCCTTTACCTAATCCGAAGTCAAAATCGGATTAGGTGAAGGAGAGAATCATTGTGAGGGTCTGGGTCAAATTGAATCTTGTCATGTTGAACTCAAATTTTGTAAAATTTCAATTTTCCAGGTCCCCCTATTGTTCATAATTGCGAACGGGCCCCAAACGGACTACGAGCGGGCCAAAACCGCGAAGAGTTTTAGCCAACTTTAAGCTTATATATCAAAGTTCCTGTGAGAGATATTAGGAATTTATAAATTACAAAAATGTAGCTGATATGATGATAAACATTTTATTAGTTGACCACTTTTTGATATCTTTTACAGGAAATGAGATACATGAGCTCAACTTTGACGGCTTAGGGGCGCTCCATTAGAGGGTTTACGGTACCTCTACTGCTTTGATAGAACATCACCTACTTTGAGCTCATATATCTCAATTCCTTCAAAAGATATCAAAAAGTGGTT</canonical>
            <polymorphic>TTTTCGGATCATAGAATTATTATTAATGAAGGGGAGGGAGCACAAAAATAGCGATTTTTCGATTTATTACAAATTCTATAGTCTCAAAAAAGGTAGTTTCTACACAATTCCATTGCAAAAAAGGGTCTAAAAACAAGAAGAATTTTATAAGAGAAGTTGCTTTTTTTGGATGTGGGGGTCAAAAGATAACAATTAGGGAGCACAGGGGAAGAAAGAGCATGTAGATAAGGGGACTTCCTGGAGGATATGGATTTAGAAGTCAGAAGCACGGGCGCGCGATGGAGATCTGATGACGGCGGCCGATGCGGAGCTCTGGAGTCCTGGAGCAACCGAGGCGGAGGCACGAGACTTTGAGCGCATCTTGGAGAGCGAGTTCTCGGCTTGATCGGCACGCTCCTCGGCGTCCTCGAGTTGATGGGTGAGTTGCTTGTACTTTTGGAGGTTCAAGTTGGCGAGTTCCTCCTGGAAATATTTGAATTTCGTATAGGTTTTAGGTGAARGAGGAGGAGGCCATCTGGAGATTATTGGGCAATTTAAGCTCATCCTTTACCTAATCCGAAGTCAAAATCGGATTAGGTGAAGGAGAGAATCATTGTGAGGGTCTGGGTCAAATTGAATCTTGTCATGTTGAACTCAAATTTTGTAAAATTTCAATTTTCCAGGTCCCCCTATTGTTCATAATTGCGAACGGGCCCCAAACGGACTACGAGCGGGCCAAAACCGCGAAGAGTTTTAGCCAACTTTAAGCTTATATATCAAAGTTCCTGTGAGAGATATTAGGAATTTATAAATTACAAAAATGTAGCTGATATGATGATAAACATTTTATTAGTTGACCACTTTTTGATATCTTTTACAGGAAATGAGATACATGAGCTCAACTTTGACGGCTTAGGGGCGCTCCATTAGAGGGTTTACGGTACCTCTACTGCTTTGATAGAACATCACCTACTTTGAGCTCATATATCTCAATTCCTTCAAAAGATATCAAAAAGTGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTACTTTTGGAGGTTCAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TATGAACAATAGGGGGACCT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TGTACTTTTGGAGGTTCAAGTTGGCGAGTTCCTCCTGGAAATATTTGAATTTCGTATAGGTTTTAGGTGAAAGAGGAGGAGGCCATCTGGAGATTATTGGGCAATTTAAGCTCATCCTTTACCTAATCCGAAGTCAAAATCGGATTAGGTGAAGGAGAGAATCATTGTGAGGGTCTGGGTCAAATTGAATCTTGTCATGTTGAACTCAAATTTTGTAAAATTTCAATTTTCCAGGTCCCCCTATTGTTCATA</canonical_amplicon>
		<polymorphic_amplicon>TGTACTTTTGGAGGTTCAAGTTGGCGAGTTCCTCCTGGAAATATTTGAATTTCGTATAGGTTTTAGGTGAARGAGGAGGAGGCCATCTGGAGATTATTGGGCAATTTAAGCTCATCCTTTACCTAATCCGAAGTCAAAATCGGATTAGGTGAAGGAGAGAATCATTGTGAGGGTCTGGGTCAAATTGAATCTTGTCATGTTGAACTCAAATTTTGTAAAATTTCAATTTTCCAGGTCCCCCTATTGTTCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23933</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1006523</contig_pos>
        <strand>+</strand>
        <context>TTTGCATCTC[A/G]TGGACGGAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAGTTCCTCCTTCTCGATCTCAAGACGGCGGATGATCTTTTGCATCTC</left_flank>
        <right_flank>TGGACGGAGCGTCCTCCCTCTCCAAGTTGATCGGTGAGATCCTTGATCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACCAAGAGCTCCTCCTTCTCGGATTGCAGAAGAGTGGCACGCTTCTCGGCGTTGAAGAATTGCTCACGGGTGTCGGCTCCGTTGCGTTGCTCCTCCTCGACTTGCAATTGCAACTCGCGGACTTGCTCCTGGTATCTCTTCAAATTCTTCTGGGCGTCGGCGTTTGCCTTGTTGGCGTGGTCCAGGGCAATCTCGAGCTCGTTGATGTCAGCCTCGAGCTTCTTCTTGACGCGGAGAAGTTCGGCCTTTCCTTTGGCTTCGGTCTCGAGGGAAGCTTGCATCGACTCGAGGGCACGGGCGTGGTTCTTTCTGGTGTTCTCGAACTCTTCCTCCTTCTCCTGGATGCGCTTCTCGATTTCGGAACGGATCTGGGAGACCTCGACTTGGGCGCGGAGCACCTTGCTTTCCTCGGCCTCGAGGGCAGCCTCGGCCTCGTCCAAAGCGTGTTGAAGTTCCTCCTTCTCGATCTCAAGACGGCGGATGATCTTTTGCATCTCGTGGACGGAGCGTCCTCCCTCTCCAAGTTGATCGGTGAGATCCTTGATCTCTTGGCTCAAGCTCTTGTTCTCACGACGGAGTCCCTCGACAACCTCGGCGAGCTCCTCTTGGGCGTTCTTGGCCTTGAAGAGGTCGGTGGAGGTGTTGCGGAGGTCGCGTTGAGCTCCATCAAGCTCGGCGGCCAAGTCGTCGGTCTTCTTTCTCCATTCGTCGATGATCTTGTCGAAGCCCTTCTGCTTCTTCTCAAGAGCCGAAGCGACTCCGTTGGCTCTCTCAACATCGACTTGAGCGTCGTCCAAGTCTCCGACAAGGCGGGACTTGGTCTTCTCAAGGGAGGCGATCTTGGAGTTGGCAGCATCGAGAGCCTCCTGAAGCTCGTTGATCTTCTGGGCTTGACGTCTCTTGGCATCCTCGAGTTCGTCTGCCTTGAGAAGTCCTTCTCCCTCGAAACGGGCCTTCCATTGTTGGATGTCGGCGTTGGCCTTGGAGAGTTGTCTGAG</canonical>
            <polymorphic>CAACCAAGAGCTCCTCCTTCTCGGATTGCAGAAGAGTGGCACGCTTCTCGGCGTTGAAGAATTGCTCACGGGTGTCGGCTCCGTTGCGTTGCTCCTCCTCGACTTGCAATTGCAACTCGCGGACTTGCTCCTGGTATCTCTTCAAATTCTTCTGGGCGTCGGCGTTTGCCTTGTTGGCGTGGTCCAGGGCAATCTCGAGCTCGTTGATGTCAGCCTCGAGCTTCTTCTTGACGCGGAGAAGTTCGGCCTTTCCTTTGGCTTCGGTCTCGAGGGAAGCTTGCATCGACTCGAGGGCACGGGCGTGGTTCTTTCTGGTGTTCTCGAACTCTTCCTCCTTCTCCTGGATGCGCTTCTCGATTTCGGAACGGATCTGGGAGACCTCGACTTGGGCGCGGAGCACCTTGCTTTCCTCGGCCTCGAGGGCAGCCTCGGCCTCGTCCAAAGCGTGTTGAAGTTCCTCCTTCTCGATCTCAAGACGGCGGATGATCTTTTGCATCTCRTGGACGGAGCGTCCTCCCTCTCCAAGTTGATCGGTGAGATCCTTGATCTCTTGGCTCAAGCTCTTGTTCTCACGACGGAGTCCCTCGACAACCTCGGCGAGCTCCTCTTGGGCGTTCTTGGCCTTGAAGAGGTCGGTGGAGGTGTTGCGGAGGTCGCGTTGAGCTCCATCAAGCTCGGCGGCCAAGTCGTCGGTCTTCTTTCTCCATTCGTCGATGATCTTGTCGAAGCCCTTCTGCTTCTTCTCAAGAGCCGAAGCGACTCCGTTGGCTCTCTCAACATCGACTTGAGCGTCGTCCAAGTCTCCGACAAGGCGGGACTTGGTCTTCTCAAGGGAGGCGATCTTGGAGTTGGCAGCATCGAGAGCCTCCTGAAGCTCGTTGATCTTCTGGGCTTGACGTCTCTTGGCATCCTCGAGTTCGTCTGCCTTGAGAAGTCCTTCTCCCTCGAAACGGGCCTTCCATTGTTGGATGTCGGCGTTGGCCTTGGAGAGTTGTCTGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>356 115 107 82 66 54 49 38 36 34 27 13 8 6 6 3</canonical_bands>
                <polymorphic_bands>356 115 107 88 82 66 49 38 36 27 13 8 6 6 3</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCTCGAACTCTTCCTCCT</pcr_primer_p1>
		<pcr_primer_p2>AAGAGCTTGAGCCAAGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTCTCGAACTCTTCCTCCTTCTCCTGGATGCGCTTCTCGATTTCGGAACGGATCTGGGAGACCTCGACTTGGGCGCGGAGCACCTTGCTTTCCTCGGCCTCGAGGGCAGCCTCGGCCTCGTCCAAAGCGTGTTGAAGTTCCTCCTTCTCGATCTCAAGACGGCGGATGATCTTTTGCATCTCGTGGACGGAGCGTCCTCCCTCTCCAAGTTGATCGGTGAGATCCTTGATCTCTTGGCTCAAGCTCTT</canonical_amplicon>
		<polymorphic_amplicon>GTTCTCGAACTCTTCCTCCTTCTCCTGGATGCGCTTCTCGATTTCGGAACGGATCTGGGAGACCTCGACTTGGGCGCGGAGCACCTTGCTTTCCTCGGCCTCGAGGGCAGCCTCGGCCTCGTCCAAAGCGTGTTGAAGTTCCTCCTTCTCGATCTCAAGACGGCGGATGATCTTTTGCATCTCRTGGACGGAGCGTCCTCCCTCTCCAAGTTGATCGGTGAGATCCTTGATCTCTTGGCTCAAGCTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23934</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1022217</contig_pos>
        <strand>+</strand>
        <context>CGAGGGTCAK[G/T]TTCCAAAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAG</left_flank>
        <right_flank>TTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCACAGTACGCCAATTGCTCATCTAGTTGTAGAATCGCCACGTTGCAGTCCGCCAGAATCCGCCCGTATTCTTCTTGAAGATTCTGAAGGTGTCTGTACTCTTGTACAGTATCCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATCCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAAAAGACTTACATTCTTACAATACTGTCTGTCCCTGGACCTCAACACCGCCTGATTCCCATCAAACACCACATGACAAGTAGAAGCACAGGAATGATTGTGCGTGGCTAGCCCCACATACATTCCACTTCCAATAGGTTCCACCCGTTTTTCAGCGATTATTCCAAACGAGTTGCACAACACACTGCAAATGATTGCGATCATTTTGTTGTTGTC</canonical>
            <polymorphic>GCACAGTACGCCAATTGCTCATCTAGTTGTAGAATCGCCACGTTGCAGTCCGCCAGAATCCGCCCGTATTCTTCTTGAAGATTCTGAAGGTGTCTGTACTCTTGTACAGTATCCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATCCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGKTTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAAAAGACTTACATTCTTACAATACTGTCTGTCCCTGGACCTCAACACCGCCTGATTCCCATCAAACACCACATGACAAGTAGAAGCACAGGAATGATTGTGCGTGGCTAGCCCCACATACATTCCACTTCCAATAGGTTCCACCCGTTTTTCAGCGATTATTCCAAACGAGTTGCACAACACACTGCAAATGATTGCGATCATTTTGTTGTTGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>339 301 162 118 32 24 24</canonical_bands>
                <polymorphic_bands>640 162 118 32 24 24</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>502 337 85 76</canonical_bands>
                <polymorphic_bands>578 337 85</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>419 339 162 32 24 24</canonical_bands>
                <polymorphic_bands>758 162 32 24 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATATTGTGGTCTGGAAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTGTTTCTGCTATTTTCCTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>354</pcr_amplicon_size>
		<canonical_amplicon>GATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAA</canonical_amplicon>
		<polymorphic_amplicon>GATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGKTTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23935</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1022231</contig_pos>
        <strand>+</strand>
        <context>CAAAATAACY[C/T]CGTTAGCCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACT</left_flank>
        <right_flank>CGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCTCATCTAGTTGTAGAATCGCCACGTTGCAGTCCGCCAGAATCCGCCCGTATTCTTCTTGAAGATTCTGAAGGTGTCTGTACTCTTGTACAGTATCCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATCCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAAAAGACTTACATTCTTACAATACTGTCTGTCCCTGGACCTCAACACCGCCTGATTCCCATCAAACACCACATGACAAGTAGAAGCACAGGAATGATTGTGCGTGGCTAGCCCCACATACATTCCACTTCCAATAGGTTCCACCCGTTTTTCAGCGATTATTCCAAACGAGTTGCACAACACACTGCAAATGATTGCGATCATTTTGTTGTTGTCCATTGATTCAGGGA</canonical>
            <polymorphic>TTGCTCATCTAGTTGTAGAATCGCCACGTTGCAGTCCGCCAGAATCCGCCCGTATTCTTCTTGAAGATTCTGAAGGTGTCTGTACTCTTGTACAGTATCCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATCCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTYCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAAAAGACTTACATTCTTACAATACTGTCTGTCCCTGGACCTCAACACCGCCTGATTCCCATCAAACACCACATGACAAGTAGAAGCACAGGAATGATTGTGCGTGGCTAGCCCCACATACATTCCACTTCCAATAGGTTCCACCCGTTTTTCAGCGATTATTCCAAACGAGTTGCACAACACACTGCAAATGATTGCGATCATTTTGTTGTTGTCCATTGATTCAGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATATTGTGGTCTGGAAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTGTTTCTGCTATTTTCCTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>354</pcr_amplicon_size>
		<canonical_amplicon>GATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAA</canonical_amplicon>
		<polymorphic_amplicon>GATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTYCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23936</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1022328</contig_pos>
        <strand>+</strand>
        <context>TGGGTGAGGA[A/T]MRGCAGATAg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGA</left_flank>
        <right_flank>ACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATCCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAAAAGACTTACATTCTTACAATACTGTCTGTCCCTGGACCTCAACACCGCCTGATTCCCATCAAACACCACATGACAAGTAGAAGCACAGGAATGATTGTGCGTGGCTAGCCCCACATACATTCCACTTCCAATAGGTTCCACCCGTTTTTCAGCGATTATTCCAAACGAGTTGCACAACACACTGCAAATGATTGCGATCATTTTGTTGTTGTCCATTGATTCAGGGAAGATGTCTGAAAGAAATTGTGGTTTTACTGCCAAATTCATAGGCTAAAAGGCCTTACTGTGTCCAGAAGCTTTGATAATGGTGAGGATATCAGAGAG</canonical>
            <polymorphic>TCCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATCCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAWACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAAAAGACTTACATTCTTACAATACTGTCTGTCCCTGGACCTCAACACCGCCTGATTCCCATCAAACACCACATGACAAGTAGAAGCACAGGAATGATTGTGCGTGGCTAGCCCCACATACATTCCACTTCCAATAGGTTCCACCCGTTTTTCAGCGATTATTCCAAACGAGTTGCACAACACACTGCAAATGATTGCGATCATTTTGTTGTTGTCCATTGATTCAGGGAAGATGTCTGAAAGAAATTGTGGTTTTACTGCCAAATTCATAGGCTAAAAGGCCTTACTGTGTCCAGAAGCTTTGATAATGGTGAGGATATCAGAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATATTGTGGTCTGGAAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTGTTTCTGCTATTTTCCTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>354</pcr_amplicon_size>
		<canonical_amplicon>GATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAA</canonical_amplicon>
		<polymorphic_amplicon>GATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAWACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23937</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1022329</contig_pos>
        <strand>+</strand>
        <context>GGGTGAGGAW[A/C]RGCAGATAgt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAA</left_flank>
        <right_flank>CGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATCCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAAAAGACTTACATTCTTACAATACTGTCTGTCCCTGGACCTCAACACCGCCTGATTCCCATCAAACACCACATGACAAGTAGAAGCACAGGAATGATTGTGCGTGGCTAGCCCCACATACATTCCACTTCCAATAGGTTCCACCCGTTTTTCAGCGATTATTCCAAACGAGTTGCACAACACACTGCAAATGATTGCGATCATTTTGTTGTTGTCCATTGATTCAGGGAAGATGTCTGAAAGAAATTGTGGTTTTACTGCCAAATTCATAGGCTAAAAGGCCTTACTGTGTCCAGAAGCTTTGATAATGGTGAGGATATCAGAGAGG</canonical>
            <polymorphic>CCAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATCCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAMCGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAAAAGACTTACATTCTTACAATACTGTCTGTCCCTGGACCTCAACACCGCCTGATTCCCATCAAACACCACATGACAAGTAGAAGCACAGGAATGATTGTGCGTGGCTAGCCCCACATACATTCCACTTCCAATAGGTTCCACCCGTTTTTCAGCGATTATTCCAAACGAGTTGCACAACACACTGCAAATGATTGCGATCATTTTGTTGTTGTCCATTGATTCAGGGAAGATGTCTGAAAGAAATTGTGGTTTTACTGCCAAATTCATAGGCTAAAAGGCCTTACTGTGTCCAGAAGCTTTGATAATGGTGAGGATATCAGAGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATATTGTGGTCTGGAAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTGTTTCTGCTATTTTCCTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>354</pcr_amplicon_size>
		<canonical_amplicon>GATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAA</canonical_amplicon>
		<polymorphic_amplicon>GATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAMCGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23938</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1022330</contig_pos>
        <strand>+</strand>
        <context>GGTGAGGAWM[A/G]GCAGATAgta</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAA</left_flank>
        <right_flank>GCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATCCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAAAAGACTTACATTCTTACAATACTGTCTGTCCCTGGACCTCAACACCGCCTGATTCCCATCAAACACCACATGACAAGTAGAAGCACAGGAATGATTGTGCGTGGCTAGCCCCACATACATTCCACTTCCAATAGGTTCCACCCGTTTTTCAGCGATTATTCCAAACGAGTTGCACAACACACTGCAAATGATTGCGATCATTTTGTTGTTGTCCATTGATTCAGGGAAGATGTCTGAAAGAAATTGTGGTTTTACTGCCAAATTCATAGGCTAAAAGGCCTTACTGTGTCCAGAAGCTTTGATAATGGTGAGGATATCAGAGAGGA</canonical>
            <polymorphic>CAATTGCTGTGATTTGTGGAGATTTTCAAGGGTATCCAGGAGCTTTGAGGTTGATTGAGTGCTCTGGAATTTTGAAATGTCTAAGAGTCCAATAGAGCGCACTTACCTGCTCAAAAGGTATCATCGCTGGCTTCCCACAAGTAGTACATGATCCATTGGCACCTTTGACAAATCCCTGACACTTGCTGGTTTGACACTTTGAAGCTAATCCAGTCAAGTCGAGATCCTCGTTCAGGCACATTTCACAGCGGCAGGTGATGAAGTGGACGTTGCGGATGGATTTTTGACGTTCGAAAGTGGGTAGCATCCGAGAGACATAGGATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAARGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAAAAGACTTACATTCTTACAATACTGTCTGTCCCTGGACCTCAACACCGCCTGATTCCCATCAAACACCACATGACAAGTAGAAGCACAGGAATGATTGTGCGTGGCTAGCCCCACATACATTCCACTTCCAATAGGTTCCACCCGTTTTTCAGCGATTATTCCAAACGAGTTGCACAACACACTGCAAATGATTGCGATCATTTTGTTGTTGTCCATTGATTCAGGGAAGATGTCTGAAAGAAATTGTGGTTTTACTGCCAAATTCATAGGCTAAAAGGCCTTACTGTGTCCAGAAGCTTTGATAATGGTGAGGATATCAGAGAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATATTGTGGTCTGGAAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTGTTTCTGCTATTTTCCTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>354</pcr_amplicon_size>
		<canonical_amplicon>GATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAACGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAA</canonical_amplicon>
		<polymorphic_amplicon>GATATTGTGGTCTGGAAAGAAGCAAAAAGAGATTGGCGCCAGAGGAGTTGAACCAGCGAGGGTCAGATTCCAAAATAACTGCGTTAGCCATTGCGCCACAAGGTGCATATAGAAAAGAAGTGGTGGTGGGTGCACACAAGGGAGTGGCGCAGCGCTAATTGTTGGGGTGGGTGAGGAAARGCAGATAGTAAACTTTGAACTCCATTATCTCGGTTCCTTTGAAAGATATCAAGAAGCTGTCAACTGATGAAATGTTGTTTTTTTAATGATACACATTTTATCAGTTGAAAACTTTTTGATATCTTTTACGGGAATTGAGATATATAAGCTCTTAGAGGAAAATAGCAGAAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23939</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1024183</contig_pos>
        <strand></strand>
        <context>tgtaacagat[A/G]tcaaaaaaga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGAAACTGTTAACTTTGAGCTCAATTATCTCGATTTCTGTAACAGAT</left_flank>
        <right_flank>TCAAAAAAGAGTCAACTGATAAAATATTGCTGATAATATGATAAATATTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGTTTTGGGTGAAATAGAAAGAAAAATCGATAGAAGAAGAGAGGGAGAGGAGGAAATCAAATTAGGGATTTGTTACTGAAACTCTTCAAACGCCCCCTAAAGTCAATAATGCTAAGTCCAATGGGGCGTACTTGCTTCACTTTCCCTCCAGGGAAGAAAAGGACATCCGGACCGACAGACCGACAGACAGATTTTCCCTCTGATTTCCCCGTATTTTTCTCTATGTCTTCTTGTATTTAGAAGAAGAGAATAGAATAAGAAAAAAGATAGAAATCTCCGCCAAATGTTCCCAATCTAGATGTCCCAAATTCTCTCTTCTTCAATTCACCAATTCTTTTTCCCTTAATTTCAAAAATAGCCAGAATAACCAAATATGGACACTGAAAAACGAAATTTGGTGTCTGAAATGCCCAAAAGTTCCAAGAGCATTTTGAAGGTTTGTCCTATTTTTTGAAACTGTTAACTTTGAGCTCAATTATCTCGATTTCTGTAACAGATATCAAAAAAGAGTCAACTGATAAAATATTGCTGATAATATGATAAATATTTTATCAGTTGACAAATTTTTGATATCTCTTATAGGAACCGAGATAATTGAGCTTAAATTTGATAGTTTGGGTGACGCCACCCACTTGTGGCGCGACCCCACCCACGCCACCCACTAGCGCGGCGCCACCGCCTTGTGTACGCCCACCACCACCGTTTCTCCTTGTGTACCTTGTGGCGCAATGGCTAACGCTCCTGTTTCGAAATCTGACACTCTCTGGTTCAACCCCACCGGCGCCAATCTCTTTTTGCTTCTTTTTCAGACAACTATTTTTCAGACAGAAGCCACCTACTTCTTCATACTGGAATTGGCATCGGCCTTCGTGCTCTCTGCCGCTCATAATGTCTTATATTTCGTGCTGGATATCAAGCTGATAGCCACAAGTTTTGCCCAGTTCTTCTTCACTTTTCTTTTCCTGAGACTCATTCATTTCGCCAACTACATCCCTCAAG</canonical>
            <polymorphic>AGGTTTTGGGTGAAATAGAAAGAAAAATCGATAGAAGAAGAGAGGGAGAGGAGGAAATCAAATTAGGGATTTGTTACTGAAACTCTTCAAACGCCCCCTAAAGTCAATAATGCTAAGTCCAATGGGGCGTACTTGCTTCACTTTCCCTCCAGGGAAGAAAAGGACATCCGGACCGACAGACCGACAGACAGATTTTCCCTCTGATTTCCCCGTATTTTTCTCTATGTCTTCTTGTATTTAGAAGAAGAGAATAGAATAAGAAAAAAGATAGAAATCTCCGCCAAATGTTCCCAATCTAGATGTCCCAAATTCTCTCTTCTTCAATTCACCAATTCTTTTTCCCTTAATTTCAAAAATAGCCAGAATAACCAAATATGGACACTGAAAAACGAAATTTGGTGTCTGAAATGCCCAAAAGTTCCAAGAGCATTTTGAAGGTTTGTCCTATTTTTTGAAACTGTTAACTTTGAGCTCAATTATCTCGATTTCTGTAACAGATRTCAAAAAAGAGTCAACTGATAAAATATTGCTGATAATATGATAAATATTTTATCAGTTGACAAATTTTTGATATCTCTTATAGGAACCGAGATAATTGAGCTTAAATTTGATAGTTTGGGTGACGCCACCCACTTGTGGCGCGACCCCACCCACGCCACCCACTAGCGCGGCGCCACCGCCTTGTGTACGCCCACCACCACCGTTTCTCCTTGTGTACCTTGTGGCGCAATGGCTAACGCTCCTGTTTCGAAATCTGACACTCTCTGGTTCAACCCCACCGGCGCCAATCTCTTTTTGCTTCTTTTTCAGACAACTATTTTTCAGACAGAAGCCACCTACTTCTTCATACTGGAATTGGCATCGGCCTTCGTGCTCTCTGCCGCTCATAATGTCTTATATTTCGTGCTGGATATCAAGCTGATAGCCACAAGTTTTGCCCAGTTCTTCTTCACTTTTCTTTTCCTGAGACTCATTCATTTCGCCAACTACATCCCTCAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>499 340 88 73</canonical_bands>
                <polymorphic_bands>572 340 88</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGAAGGTTTGTCCTATTTT</pcr_primer_p1>
		<pcr_primer_p2>CCACAAGGTACACAAGGAGA</pcr_primer_p2>
		<pcr_amplicon_size>297</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGAAGGTTTGTCCTATTTTTTGAAACTGTTAACTTTGAGCTCAATTATCTCGATTTCTGTAACAGATATCAAAAAAGAGTCAACTGATAAAATATTGCTGATAATATGATAAATATTTTATCAGTTGACAAATTTTTGATATCTCTTATAGGAACCGAGATAATTGAGCTTAAATTTGATAGTTTGGGTGACGCCACCCACTTGTGGCGCGACCCCACCCACGCCACCCACTAGCGCGGCGCCACCGCCTTGTGTACGCCCACCACCACCGTTTCTCCTTGTGTACCTTGTGG</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGAAGGTTTGTCCTATTTTTTGAAACTGTTAACTTTGAGCTCAATTATCTCGATTTCTGTAACAGATRTCAAAAAAGAGTCAACTGATAAAATATTGCTGATAATATGATAAATATTTTATCAGTTGACAAATTTTTGATATCTCTTATAGGAACCGAGATAATTGAGCTTAAATTTGATAGTTTGGGTGACGCCACCCACTTGTGGCGCGACCCCACCCACGCCACCCACTAGCGCGGCGCCACCGCCTTGTGTACGCCCACCACCACCGTTTCTCCTTGTGTACCTTGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23940</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1028813</contig_pos>
        <strand>+</strand>
        <context>GGCTGCCGAG[G/T]AGTAACTCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTCGGAGGAGGCCGGAGACGATGAGCCAGAGGCCAAGAAGGCTGCCGAG</left_flank>
        <right_flank>AGTAACTCCTCCTTCTCTTTTCTCAACACCCACCCATCACCGGAATCTCC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTCGAAGTCGAGGAGGATTTCGCAGGCGAGGGAGACGGTGCCGAGGGCGAGGAGAGCGGAGAGGACAGCGAAGGCGAGGACGGACCAGGACTCAGCTATCTCAACAAGAGTCAGTTCTCGGACGATGAGACTGACGACTACGTGCCAGAGGTAAGAATAGTTTATAAGTTATTCAGTGAGAAGCAAATTGCTGGGTTCTCCAGGAGCTACACGACCCGTCTAATCAAGGCCCTAGCAGGAAGCTCCATGCGCCTTCAATTTTGAAGCGATTTAGGAATTAAAGGCGCATAGAGTTTCCTGCTTGGGTCTCGCTTTGACTAATCGTGTAGCCCCTTGAGGACAACACATGGCCTAGGAATCTTCACCAATGGGGGCCTATGTAGACCTTTGAGTATTCTAACTATTTTCTTTCAGGAGAACGCCGAGGCTCGCGGAACCAAGAGGTCAGCTTCGGAGGAGGCCGGAGACGATGAGCCAGAGGCCAAGAAGGCTGCCGAGGAGTAACTCCTCCTTCTCTTTTCTCAACACCCACCCATCACCGGAATCTCCCCCCACAATTTTATACTTCGTCTATTTTTATATGTTTTTTAAACAAACAACTTCTGTAACCAACTCTCCCCTTCACTACCCCCAAAAACGATGTTCCCTATCCATCGTTTCCCCCTTTTTCTTCTCTATCTCGGCTGTGCTGTACAATAAACCGACTCATTTGATCTGAATCTCTTTAAAAGAAAAATCCTATTCTATTCTGAATTCCAGTGATGAGAATAAATTATTGTTTTCTGAAGTTTTTTAGTATGGGAAAATTCATTAAATTTCGGGTTTCTTTCCTGAAAAATCTCGAAAATTTTCAAAATTTGAATAACCGCGCACACCGATGCTCCGCTATCCCGCTAGCGCGCGTTGTTTAGCCAAGAAAAAAATGCAATTTCCAGCGAGAATTTAGTGGATTTTCACCTATTTTCAGCCAATTTTCCAATACCAAATCGAATCTTGCAG</canonical>
            <polymorphic>AGTCGAAGTCGAGGAGGATTTCGCAGGCGAGGGAGACGGTGCCGAGGGCGAGGAGAGCGGAGAGGACAGCGAAGGCGAGGACGGACCAGGACTCAGCTATCTCAACAAGAGTCAGTTCTCGGACGATGAGACTGACGACTACGTGCCAGAGGTAAGAATAGTTTATAAGTTATTCAGTGAGAAGCAAATTGCTGGGTTCTCCAGGAGCTACACGACCCGTCTAATCAAGGCCCTAGCAGGAAGCTCCATGCGCCTTCAATTTTGAAGCGATTTAGGAATTAAAGGCGCATAGAGTTTCCTGCTTGGGTCTCGCTTTGACTAATCGTGTAGCCCCTTGAGGACAACACATGGCCTAGGAATCTTCACCAATGGGGGCCTATGTAGACCTTTGAGTATTCTAACTATTTTCTTTCAGGAGAACGCCGAGGCTCGCGGAACCAAGAGGTCAGCTTCGGAGGAGGCCGGAGACGATGAGCCAGAGGCCAAGAAGGCTGCCGAGKAGTAACTCCTCCTTCTCTTTTCTCAACACCCACCCATCACCGGAATCTCCCCCCACAATTTTATACTTCGTCTATTTTTATATGTTTTTTAAACAAACAACTTCTGTAACCAACTCTCCCCTTCACTACCCCCAAAAACGATGTTCCCTATCCATCGTTTCCCCCTTTTTCTTCTCTATCTCGGCTGTGCTGTACAATAAACCGACTCATTTGATCTGAATCTCTTTAAAAGAAAAATCCTATTCTATTCTGAATTCCAGTGATGAGAATAAATTATTGTTTTCTGAAGTTTTTTAGTATGGGAAAATTCATTAAATTTCGGGTTTCTTTCCTGAAAAATCTCGAAAATTTTCAAAATTTGAATAACCGCGCACACCGATGCTCCGCTATCCCGCTAGCGCGCGTTGTTTAGCCAAGAAAAAAATGCAATTTCCAGCGAGAATTTAGTGGATTTTCACCTATTTTCAGCCAATTTTCCAATACCAAATCGAATCTTGCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>505 310 72 71 42</canonical_bands>
                <polymorphic_bands>577 310 71 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTAACTATTTTCTTTCAGGAGAAC</pcr_primer_p1>
		<pcr_primer_p2>GATAGGGAACATCGTTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TCTAACTATTTTCTTTCAGGAGAACGCCGAGGCTCGCGGAACCAAGAGGTCAGCTTCGGAGGAGGCCGGAGACGATGAGCCAGAGGCCAAGAAGGCTGCCGAGGAGTAACTCCTCCTTCTCTTTTCTCAACACCCACCCATCACCGGAATCTCCCCCCACAATTTTATACTTCGTCTATTTTTATATGTTTTTTAAACAAACAACTTCTGTAACCAACTCTCCCCTTCACTACCCCCAAAAACGATGTTCCCTATC</canonical_amplicon>
		<polymorphic_amplicon>TCTAACTATTTTCTTTCAGGAGAACGCCGAGGCTCGCGGAACCAAGAGGTCAGCTTCGGAGGAGGCCGGAGACGATGAGCCAGAGGCCAAGAAGGCTGCCGAGKAGTAACTCCTCCTTCTCTTTTCTCAACACCCACCCATCACCGGAATCTCCCCCCACAATTTTATACTTCGTCTATTTTTATATGTTTTTTAAACAAACAACTTCTGTAACCAACTCTCCCCTTCACTACCCCCAAAAACGATGTTCCCTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23941</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1028830</contig_pos>
        <strand>+</strand>
        <context>TCCTCCTTCT[A/C]TTTTCTCAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GACGATGAGCCAGAGGCCAAGAAGGCTGCCGAGGAGTAACTCCTCCTTCT</left_flank>
        <right_flank>TTTTCTCAACACCCACCCATCACCGGAATCTCCCCCCACAATTTTATACT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCGCAGGCGAGGGAGACGGTGCCGAGGGCGAGGAGAGCGGAGAGGACAGCGAAGGCGAGGACGGACCAGGACTCAGCTATCTCAACAAGAGTCAGTTCTCGGACGATGAGACTGACGACTACGTGCCAGAGGTAAGAATAGTTTATAAGTTATTCAGTGAGAAGCAAATTGCTGGGTTCTCCAGGAGCTACACGACCCGTCTAATCAAGGCCCTAGCAGGAAGCTCCATGCGCCTTCAATTTTGAAGCGATTTAGGAATTAAAGGCGCATAGAGTTTCCTGCTTGGGTCTCGCTTTGACTAATCGTGTAGCCCCTTGAGGACAACACATGGCCTAGGAATCTTCACCAATGGGGGCCTATGTAGACCTTTGAGTATTCTAACTATTTTCTTTCAGGAGAACGCCGAGGCTCGCGGAACCAAGAGGTCAGCTTCGGAGGAGGCCGGAGACGATGAGCCAGAGGCCAAGAAGGCTGCCGAGGAGTAACTCCTCCTTCTCTTTTCTCAACACCCACCCATCACCGGAATCTCCCCCCACAATTTTATACTTCGTCTATTTTTATATGTTTTTTAAACAAACAACTTCTGTAACCAACTCTCCCCTTCACTACCCCCAAAAACGATGTTCCCTATCCATCGTTTCCCCCTTTTTCTTCTCTATCTCGGCTGTGCTGTACAATAAACCGACTCATTTGATCTGAATCTCTTTAAAAGAAAAATCCTATTCTATTCTGAATTCCAGTGATGAGAATAAATTATTGTTTTCTGAAGTTTTTTAGTATGGGAAAATTCATTAAATTTCGGGTTTCTTTCCTGAAAAATCTCGAAAATTTTCAAAATTTGAATAACCGCGCACACCGATGCTCCGCTATCCCGCTAGCGCGCGTTGTTTAGCCAAGAAAAAAATGCAATTTCCAGCGAGAATTTAGTGGATTTTCACCTATTTTCAGCCAATTTTCCAATACCAAATCGAATCTTGCAGGGTTTTTTAAGTCCCAA</canonical>
            <polymorphic>ATTTCGCAGGCGAGGGAGACGGTGCCGAGGGCGAGGAGAGCGGAGAGGACAGCGAAGGCGAGGACGGACCAGGACTCAGCTATCTCAACAAGAGTCAGTTCTCGGACGATGAGACTGACGACTACGTGCCAGAGGTAAGAATAGTTTATAAGTTATTCAGTGAGAAGCAAATTGCTGGGTTCTCCAGGAGCTACACGACCCGTCTAATCAAGGCCCTAGCAGGAAGCTCCATGCGCCTTCAATTTTGAAGCGATTTAGGAATTAAAGGCGCATAGAGTTTCCTGCTTGGGTCTCGCTTTGACTAATCGTGTAGCCCCTTGAGGACAACACATGGCCTAGGAATCTTCACCAATGGGGGCCTATGTAGACCTTTGAGTATTCTAACTATTTTCTTTCAGGAGAACGCCGAGGCTCGCGGAACCAAGAGGTCAGCTTCGGAGGAGGCCGGAGACGATGAGCCAGAGGCCAAGAAGGCTGCCGAGGAGTAACTCCTCCTTCTMTTTTCTCAACACCCACCCATCACCGGAATCTCCCCCCACAATTTTATACTTCGTCTATTTTTATATGTTTTTTAAACAAACAACTTCTGTAACCAACTCTCCCCTTCACTACCCCCAAAAACGATGTTCCCTATCCATCGTTTCCCCCTTTTTCTTCTCTATCTCGGCTGTGCTGTACAATAAACCGACTCATTTGATCTGAATCTCTTTAAAAGAAAAATCCTATTCTATTCTGAATTCCAGTGATGAGAATAAATTATTGTTTTCTGAAGTTTTTTAGTATGGGAAAATTCATTAAATTTCGGGTTTCTTTCCTGAAAAATCTCGAAAATTTTCAAAATTTGAATAACCGCGCACACCGATGCTCCGCTATCCCGCTAGCGCGCGTTGTTTAGCCAAGAAAAAAATGCAATTTCCAGCGAGAATTTAGTGGATTTTCACCTATTTTCAGCCAATTTTCCAATACCAAATCGAATCTTGCAGGGTTTTTTAAGTCCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAACTATTTTCTTTCAGGAGAAC</pcr_primer_p1>
		<pcr_primer_p2>GATAGGGAACATCGTTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TCTAACTATTTTCTTTCAGGAGAACGCCGAGGCTCGCGGAACCAAGAGGTCAGCTTCGGAGGAGGCCGGAGACGATGAGCCAGAGGCCAAGAAGGCTGCCGAGGAGTAACTCCTCCTTCTCTTTTCTCAACACCCACCCATCACCGGAATCTCCCCCCACAATTTTATACTTCGTCTATTTTTATATGTTTTTTAAACAAACAACTTCTGTAACCAACTCTCCCCTTCACTACCCCCAAAAACGATGTTCCCTATC</canonical_amplicon>
		<polymorphic_amplicon>TCTAACTATTTTCTTTCAGGAGAACGCCGAGGCTCGCGGAACCAAGAGGTCAGCTTCGGAGGAGGCCGGAGACGATGAGCCAGAGGCCAAGAAGGCTGCCGAGGAGTAACTCCTCCTTCTMTTTTCTCAACACCCACCCATCACCGGAATCTCCCCCCACAATTTTATACTTCGTCTATTTTTATATGTTTTTTAAACAAACAACTTCTGTAACCAACTCTCCCCTTCACTACCCCCAAAAACGATGTTCCCTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23942</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1028925</contig_pos>
        <strand>+</strand>
        <context>TTCTGTAACC[A/G]ACTCTCCCCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATACTTCGTCTATTTTTATATGTTTTTTAAACAAACAACTTCTGTAACC</left_flank>
        <right_flank>ACTCTCCCCTTCACTACCCCCAAAAACGATGTTCCCTATCCATCGTTTCC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTTCTCGGACGATGAGACTGACGACTACGTGCCAGAGGTAAGAATAGTTTATAAGTTATTCAGTGAGAAGCAAATTGCTGGGTTCTCCAGGAGCTACACGACCCGTCTAATCAAGGCCCTAGCAGGAAGCTCCATGCGCCTTCAATTTTGAAGCGATTTAGGAATTAAAGGCGCATAGAGTTTCCTGCTTGGGTCTCGCTTTGACTAATCGTGTAGCCCCTTGAGGACAACACATGGCCTAGGAATCTTCACCAATGGGGGCCTATGTAGACCTTTGAGTATTCTAACTATTTTCTTTCAGGAGAACGCCGAGGCTCGCGGAACCAAGAGGTCAGCTTCGGAGGAGGCCGGAGACGATGAGCCAGAGGCCAAGAAGGCTGCCGAGGAGTAACTCCTCCTTCTCTTTTCTCAACACCCACCCATCACCGGAATCTCCCCCCACAATTTTATACTTCGTCTATTTTTATATGTTTTTTAAACAAACAACTTCTGTAACCAACTCTCCCCTTCACTACCCCCAAAAACGATGTTCCCTATCCATCGTTTCCCCCTTTTTCTTCTCTATCTCGGCTGTGCTGTACAATAAACCGACTCATTTGATCTGAATCTCTTTAAAAGAAAAATCCTATTCTATTCTGAATTCCAGTGATGAGAATAAATTATTGTTTTCTGAAGTTTTTTAGTATGGGAAAATTCATTAAATTTCGGGTTTCTTTCCTGAAAAATCTCGAAAATTTTCAAAATTTGAATAACCGCGCACACCGATGCTCCGCTATCCCGCTAGCGCGCGTTGTTTAGCCAAGAAAAAAATGCAATTTCCAGCGAGAATTTAGTGGATTTTCACCTATTTTCAGCCAATTTTCCAATACCAAATCGAATCTTGCAGGGTTTTTTAAGTCCCAAAATGGCTAGAAGTCGAGAACAGGGCCGGAAACGAAAGATTCCCCGCTGCAACAACGACCAGCCAGTTATTCCAAAATTGCAGTACATCGGACAGA</canonical>
            <polymorphic>CAGTTCTCGGACGATGAGACTGACGACTACGTGCCAGAGGTAAGAATAGTTTATAAGTTATTCAGTGAGAAGCAAATTGCTGGGTTCTCCAGGAGCTACACGACCCGTCTAATCAAGGCCCTAGCAGGAAGCTCCATGCGCCTTCAATTTTGAAGCGATTTAGGAATTAAAGGCGCATAGAGTTTCCTGCTTGGGTCTCGCTTTGACTAATCGTGTAGCCCCTTGAGGACAACACATGGCCTAGGAATCTTCACCAATGGGGGCCTATGTAGACCTTTGAGTATTCTAACTATTTTCTTTCAGGAGAACGCCGAGGCTCGCGGAACCAAGAGGTCAGCTTCGGAGGAGGCCGGAGACGATGAGCCAGAGGCCAAGAAGGCTGCCGAGGAGTAACTCCTCCTTCTCTTTTCTCAACACCCACCCATCACCGGAATCTCCCCCCACAATTTTATACTTCGTCTATTTTTATATGTTTTTTAAACAAACAACTTCTGTAACCRACTCTCCCCTTCACTACCCCCAAAAACGATGTTCCCTATCCATCGTTTCCCCCTTTTTCTTCTCTATCTCGGCTGTGCTGTACAATAAACCGACTCATTTGATCTGAATCTCTTTAAAAGAAAAATCCTATTCTATTCTGAATTCCAGTGATGAGAATAAATTATTGTTTTCTGAAGTTTTTTAGTATGGGAAAATTCATTAAATTTCGGGTTTCTTTCCTGAAAAATCTCGAAAATTTTCAAAATTTGAATAACCGCGCACACCGATGCTCCGCTATCCCGCTAGCGCGCGTTGTTTAGCCAAGAAAAAAATGCAATTTCCAGCGAGAATTTAGTGGATTTTCACCTATTTTCAGCCAATTTTCCAATACCAAATCGAATCTTGCAGGGTTTTTTAAGTCCCAAAATGGCTAGAAGTCGAGAACAGGGCCGGAAACGAAAGATTCCCCGCTGCAACAACGACCAGCCAGTTATTCCAAAATTGCAGTACATCGGACAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCACAATTTTATACTTCGTCTA</pcr_primer_p1>
		<pcr_primer_p2>CATCACTGGAATTCAGAATAGAA</pcr_primer_p2>
		<pcr_amplicon_size>214</pcr_amplicon_size>
		<canonical_amplicon>CCCACAATTTTATACTTCGTCTATTTTTATATGTTTTTTAAACAAACAACTTCTGTAACCAACTCTCCCCTTCACTACCCCCAAAAACGATGTTCCCTATCCATCGTTTCCCCCTTTTTCTTCTCTATCTCGGCTGTGCTGTACAATAAACCGACTCATTTGATCTGAATCTCTTTAAAAGAAAAATCCTATTCTATTCTGAATTCCAGTGATG</canonical_amplicon>
		<polymorphic_amplicon>CCCACAATTTTATACTTCGTCTATTTTTATATGTTTTTTAAACAAACAACTTCTGTAACCRACTCTCCCCTTCACTACCCCCAAAAACGATGTTCCCTATCCATCGTTTCCCCCTTTTTCTTCTCTATCTCGGCTGTGCTGTACAATAAACCGACTCATTTGATCTGAATCTCTTTAAAAGAAAAATCCTATTCTATTCTGAATTCCAGTGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23943</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1028977</contig_pos>
        <strand>+</strand>
        <context>ATCGTTTCCC[C/T]CTTTTTCTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCTCCCCTTCACTACCCCCAAAAACGATGTTCCCTATCCATCGTTTCCC</left_flank>
        <right_flank>CTTTTTCTTCTCTATCTCGGCTGTGCTGTACAATAAACCGACTCATTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAGTTATTCAGTGAGAAGCAAATTGCTGGGTTCTCCAGGAGCTACACGACCCGTCTAATCAAGGCCCTAGCAGGAAGCTCCATGCGCCTTCAATTTTGAAGCGATTTAGGAATTAAAGGCGCATAGAGTTTCCTGCTTGGGTCTCGCTTTGACTAATCGTGTAGCCCCTTGAGGACAACACATGGCCTAGGAATCTTCACCAATGGGGGCCTATGTAGACCTTTGAGTATTCTAACTATTTTCTTTCAGGAGAACGCCGAGGCTCGCGGAACCAAGAGGTCAGCTTCGGAGGAGGCCGGAGACGATGAGCCAGAGGCCAAGAAGGCTGCCGAGGAGTAACTCCTCCTTCTCTTTTCTCAACACCCACCCATCACCGGAATCTCCCCCCACAATTTTATACTTCGTCTATTTTTATATGTTTTTTAAACAAACAACTTCTGTAACCAACTCTCCCCTTCACTACCCCCAAAAACGATGTTCCCTATCCATCGTTTCCCCCTTTTTCTTCTCTATCTCGGCTGTGCTGTACAATAAACCGACTCATTTGATCTGAATCTCTTTAAAAGAAAAATCCTATTCTATTCTGAATTCCAGTGATGAGAATAAATTATTGTTTTCTGAAGTTTTTTAGTATGGGAAAATTCATTAAATTTCGGGTTTCTTTCCTGAAAAATCTCGAAAATTTTCAAAATTTGAATAACCGCGCACACCGATGCTCCGCTATCCCGCTAGCGCGCGTTGTTTAGCCAAGAAAAAAATGCAATTTCCAGCGAGAATTTAGTGGATTTTCACCTATTTTCAGCCAATTTTCCAATACCAAATCGAATCTTGCAGGGTTTTTTAAGTCCCAAAATGGCTAGAAGTCGAGAACAGGGCCGGAAACGAAAGATTCCCCGCTGCAACAACGACCAGCCAGTTATTCCAAAATTGCAGTACATCGGACAGAAGCTGAATCATCCGCTATTGATCAATGACGCTGAAACAAGTGAGTTCTATGT</canonical>
            <polymorphic>ATAAGTTATTCAGTGAGAAGCAAATTGCTGGGTTCTCCAGGAGCTACACGACCCGTCTAATCAAGGCCCTAGCAGGAAGCTCCATGCGCCTTCAATTTTGAAGCGATTTAGGAATTAAAGGCGCATAGAGTTTCCTGCTTGGGTCTCGCTTTGACTAATCGTGTAGCCCCTTGAGGACAACACATGGCCTAGGAATCTTCACCAATGGGGGCCTATGTAGACCTTTGAGTATTCTAACTATTTTCTTTCAGGAGAACGCCGAGGCTCGCGGAACCAAGAGGTCAGCTTCGGAGGAGGCCGGAGACGATGAGCCAGAGGCCAAGAAGGCTGCCGAGGAGTAACTCCTCCTTCTCTTTTCTCAACACCCACCCATCACCGGAATCTCCCCCCACAATTTTATACTTCGTCTATTTTTATATGTTTTTTAAACAAACAACTTCTGTAACCAACTCTCCCCTTCACTACCCCCAAAAACGATGTTCCCTATCCATCGTTTCCCYCTTTTTCTTCTCTATCTCGGCTGTGCTGTACAATAAACCGACTCATTTGATCTGAATCTCTTTAAAAGAAAAATCCTATTCTATTCTGAATTCCAGTGATGAGAATAAATTATTGTTTTCTGAAGTTTTTTAGTATGGGAAAATTCATTAAATTTCGGGTTTCTTTCCTGAAAAATCTCGAAAATTTTCAAAATTTGAATAACCGCGCACACCGATGCTCCGCTATCCCGCTAGCGCGCGTTGTTTAGCCAAGAAAAAAATGCAATTTCCAGCGAGAATTTAGTGGATTTTCACCTATTTTCAGCCAATTTTCCAATACCAAATCGAATCTTGCAGGGTTTTTTAAGTCCCAAAATGGCTAGAAGTCGAGAACAGGGCCGGAAACGAAAGATTCCCCGCTGCAACAACGACCAGCCAGTTATTCCAAAATTGCAGTACATCGGACAGAAGCTGAATCATCCGCTATTGATCAATGACGCTGAAACAAGTGAGTTCTATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAAACAAACAACTTCTGTAACC</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAACCCGAAATTTAATG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTAAACAAACAACTTCTGTAACCAACTCTCCCCTTCACTACCCCCAAAAACGATGTTCCCTATCCATCGTTTCCCCCTTTTTCTTCTCTATCTCGGCTGTGCTGTACAATAAACCGACTCATTTGATCTGAATCTCTTTAAAAGAAAAATCCTATTCTATTCTGAATTCCAGTGATGAGAATAAATTATTGTTTTCTGAAGTTTTTTAGTATGGGAAAATTCATTAAATTTCGGGTTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTAAACAAACAACTTCTGTAACCAACTCTCCCCTTCACTACCCCCAAAAACGATGTTCCCTATCCATCGTTTCCCYCTTTTTCTTCTCTATCTCGGCTGTGCTGTACAATAAACCGACTCATTTGATCTGAATCTCTTTAAAAGAAAAATCCTATTCTATTCTGAATTCCAGTGATGAGAATAAATTATTGTTTTCTGAAGTTTTTTAGTATGGGAAAATTCATTAAATTTCGGGTTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23944</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1036529</contig_pos>
        <strand>+</strand>
        <context>GAATAATACT[A/G]TAATTTTTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAATACT</left_flank>
        <right_flank>TAATTTTTGGACACGCTTCTTCGGGGTTATCCGTTGAGGCAACAATTTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTACGGTGGCGTTCTCGCTTGTACAGTAACAGGAGTCATGGTTAGGGGTCCATTGATATTTCTCGTGCAAGGAACGTTTTAAGCATGTGCTCACATTCTATTGCTGGAATAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTTTGCGAGTGCGGCGTGGTGTTTTGGCGTGCCACTTGGAGAGCATATTTTCTATGAAAATCTCATTAAATCCGTCATTAAATCCTACACCCTTTTTTCCGGGTCAAAAACAGCCCTAAATAGCCCAAAATAACCCCTTTTCCTCTTCCCCTACCCCTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGTGGAAGGTATAGGCGCGCCGCTCGCCTCCCCCATTGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAATACTGTAATTTTTGGACACGCTTCTTCGGGGTTATCCGTTGAGGCAACAATTTATTAAAAAGATTTCTAGAATTTTCTTAATGAATACTCCTTTTGAAGATCCCATAATCTGGGTTGAATTTCCCTGATGCCGGAAATCCTAAAAACAACTATAGAAAATTCCAGATTTCTGTTAAAATAATCAAACATTCCGTATAAAATTGGAGATTTTATTCAAGTACACATAATTTAGAAACATTTTGAAGACTCGACCGTCTAGAACATTCTAAACGAAAGAGCATCACAGATCGATATACAAGACGAATTTGAGGGGGCATCAGAAAAACAAAATTTAGACAACAGCTTCACGCTCAACAGCGAATGGGGTGTCGACCTTGATGTGTCCGGAGGCGGCGATGACGACGTCCTGCTTTGGCCGATCTCCTGGCAGCTTCTCTGTCTTCTCGATCTTTCTGACAACATCCATTCCTTCGAGCACCTTTCCGAAGACAACGTGACGTCCGTC</canonical>
            <polymorphic>GGTACGGTGGCGTTCTCGCTTGTACAGTAACAGGAGTCATGGTTAGGGGTCCATTGATATTTCTCGTGCAAGGAACGTTTTAAGCATGTGCTCACATTCTATTGCTGGAATAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTTTGCGAGTGCGGCGTGGTGTTTTGGCGTGCCACTTGGAGAGCATATTTTCTATGAAAATCTCATTAAATCCGTCATTAAATCCTACACCCTTTTTTCCGGGTCAAAAACAGCCCTAAATAGCCCAAAATAACCCCTTTTCCTCTTCCCCTACCCCTAAAAGTGGGCGGAGCCTGCGACACACACAAAACATAGCGGGCGGCGGAACCCGGGAGATGTCGGTACACGGTGGAAGGTATAGGCGCGCCGCTCGCCTCCCCCATTGGTTTTAACCCAGTTAACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAATACTRTAATTTTTGGACACGCTTCTTCGGGGTTATCCGTTGAGGCAACAATTTATTAAAAAGATTTCTAGAATTTTCTTAATGAATACTCCTTTTGAAGATCCCATAATCTGGGTTGAATTTCCCTGATGCCGGAAATCCTAAAAACAACTATAGAAAATTCCAGATTTCTGTTAAAATAATCAAACATTCCGTATAAAATTGGAGATTTTATTCAAGTACACATAATTTAGAAACATTTTGAAGACTCGACCGTCTAGAACATTCTAAACGAAAGAGCATCACAGATCGATATACAAGACGAATTTGAGGGGGCATCAGAAAAACAAAATTTAGACAACAGCTTCACGCTCAACAGCGAATGGGGTGTCGACCTTGATGTGTCCGGAGGCGGCGATGACGACGTCCTGCTTTGGCCGATCTCCTGGCAGCTTCTCTGTCTTCTCGATCTTTCTGACAACATCCATTCCTTCGAGCACCTTTCCGAAGACAACGTGACGTCCGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>368 252 249 105 20 6</canonical_bands>
                <polymorphic_bands>368 354 252 20 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAAGGTTAGCATGGATTT</pcr_primer_p1>
		<pcr_primer_p2>CAATTTTATACGGAATGTTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAATACTGTAATTTTTGGACACGCTTCTTCGGGGTTATCCGTTGAGGCAACAATTTATTAAAAAGATTTCTAGAATTTTCTTAATGAATACTCCTTTTGAAGATCCCATAATCTGGGTTGAATTTCCCTGATGCCGGAAATCCTAAAAACAACTATAGAAAATTCCAGATTTCTGTTAAAATAATCAAACATTCCGTATAAAATTG</canonical_amplicon>
		<polymorphic_amplicon>ACCAAGGTTAGCATGGATTTCGACCTTTCGAAACGAGAGTGTTGAATAATACTRTAATTTTTGGACACGCTTCTTCGGGGTTATCCGTTGAGGCAACAATTTATTAAAAAGATTTCTAGAATTTTCTTAATGAATACTCCTTTTGAAGATCCCATAATCTGGGTTGAATTTCCCTGATGCCGGAAATCCTAAAAACAACTATAGAAAATTCCAGATTTCTGTTAAAATAATCAAACATTCCGTATAAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23945</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1107461</contig_pos>
        <strand>+</strand>
        <context>AACGATTTTC[A/G]CCGATTCTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCAATCAAAATTTTCAGAAATTCTCGGAATTTTCGATCAACGATTTTC</left_flank>
        <right_flank>CCGATTCTCAATTTTCAGAGATTTTTCCGGCTCTTCATTTCTAGCAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATATATAATTAATTAATTAATTAGAAGATAATTACAAATCGGTATCGTACCAATTATGATTCGGGCGCATTTGGGAGTTGTTCAATGCGACATTGATGGATTCCGAATGCCCGCCGTCGTTGGTTGGATACATTTCAGCGAATAGCTCTCGCTCAAGACCATCACGTTGCCAATCGCTGGCTCCTCCGGACATCTCGTATTCGTAGGACTGAAAATTAGTGGATTTTTGGGGTTTTTGACATATTTTGGCATATTTTTAATGATTATTTTGAGCCAAAAAATGGCAAATTTTGAGTGAAAAGAGCTGAAATTTTCGCTCAAAATTGAATTTTAAAAAATTGAGTTTAGCATTTCTGACCCATTTTGGCATGATTTAATGATATTGTTCAGCCGATAAAAGGCTAATTTCAAGTGAAAAAAAGAGGAATTTCTGCTTAAAAACTGCCTTTTCCAATCAAAATTTTCAGAAATTCTCGGAATTTTCGATCAACGATTTTCACCGATTCTCAATTTTCAGAGATTTTTCCGGCTCTTCATTTCTAGCAATTTTTGGGAACTGACTGAATTTTTTGATAGTATTTTTCCAGCCGAAAGTTCAAAAATTTGCAAAACTTTGAAAAATTGAATTTTAGCCAATATTGAAAACTCCAGAAATTTGCGATTTTTTGAGATTTTTCGAGAATAAAAAACTTGATTTTTTGCAAAATTCTTAGACCTTTTTAGGTTTTTCAGCTATTTTTGAAAATTCTTTTTCGATTTTTCCGAATTTTTTGCCTGAAATTTGATGGGATGCTCGCGAAGATTACTGTAGATTACTGTAGTTTTTTCTGCAAACACAATCACGTCAAAATGCAGATCTGTCTGCTGATCGTGTTGGCAGAAAACTACAGTAATCAACAGTAATCTTCTGTCAATTTTCAGACAAGAAAACTCGGAAAAATCGAAAAAGAATATTCAAAAATAGCTGAAAAACCTGAAAATGTGTAAAAATGTTGCGAA</canonical>
            <polymorphic>AATATATAATTAATTAATTAATTAGAAGATAATTACAAATCGGTATCGTACCAATTATGATTCGGGCGCATTTGGGAGTTGTTCAATGCGACATTGATGGATTCCGAATGCCCGCCGTCGTTGGTTGGATACATTTCAGCGAATAGCTCTCGCTCAAGACCATCACGTTGCCAATCGCTGGCTCCTCCGGACATCTCGTATTCGTAGGACTGAAAATTAGTGGATTTTTGGGGTTTTTGACATATTTTGGCATATTTTTAATGATTATTTTGAGCCAAAAAATGGCAAATTTTGAGTGAAAAGAGCTGAAATTTTCGCTCAAAATTGAATTTTAAAAAATTGAGTTTAGCATTTCTGACCCATTTTGGCATGATTTAATGATATTGTTCAGCCGATAAAAGGCTAATTTCAAGTGAAAAAAAGAGGAATTTCTGCTTAAAAACTGCCTTTTCCAATCAAAATTTTCAGAAATTCTCGGAATTTTCGATCAACGATTTTCRCCGATTCTCAATTTTCAGAGATTTTTCCGGCTCTTCATTTCTAGCAATTTTTGGGAACTGACTGAATTTTTTGATAGTATTTTTCCAGCCGAAAGTTCAAAAATTTGCAAAACTTTGAAAAATTGAATTTTAGCCAATATTGAAAACTCCAGAAATTTGCGATTTTTTGAGATTTTTCGAGAATAAAAAACTTGATTTTTTGCAAAATTCTTAGACCTTTTTAGGTTTTTCAGCTATTTTTGAAAATTCTTTTTCGATTTTTCCGAATTTTTTGCCTGAAATTTGATGGGATGCTCGCGAAGATTACTGTAGATTACTGTAGTTTTTTCTGCAAACACAATCACGTCAAAATGCAGATCTGTCTGCTGATCGTGTTGGCAGAAAACTACAGTAATCAACAGTAATCTTCTGTCAATTTTCAGACAAGAAAACTCGGAAAAATCGAAAAAGAATATTCAAAAATAGCTGAAAAACCTGAAAATGTGTAAAAATGTTGCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>337 165 117 111 85 76 57 31 15 6</canonical_bands>
                <polymorphic_bands>422 165 117 111 76 57 31 15 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGAGTTTAGCATTTCTGACC</pcr_primer_p1>
		<pcr_primer_p2>GGCTGGAAAAATACTATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTGAGTTTAGCATTTCTGACCCATTTTGGCATGATTTAATGATATTGTTCAGCCGATAAAAGGCTAATTTCAAGTGAAAAAAAGAGGAATTTCTGCTTAAAAACTGCCTTTTCCAATCAAAATTTTCAGAAATTCTCGGAATTTTCGATCAACGATTTTCACCGATTCTCAATTTTCAGAGATTTTTCCGGCTCTTCATTTCTAGCAATTTTTGGGAACTGACTGAATTTTTTGATAGTATTTTTCCAGCC</canonical_amplicon>
		<polymorphic_amplicon>ATTGAGTTTAGCATTTCTGACCCATTTTGGCATGATTTAATGATATTGTTCAGCCGATAAAAGGCTAATTTCAAGTGAAAAAAAGAGGAATTTCTGCTTAAAAACTGCCTTTTCCAATCAAAATTTTCAGAAATTCTCGGAATTTTCGATCAACGATTTTCRCCGATTCTCAATTTTCAGAGATTTTTCCGGCTCTTCATTTCTAGCAATTTTTGGGAACTGACTGAATTTTTTGATAGTATTTTTCCAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23946</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1111238</contig_pos>
        <strand></strand>
        <context>gaatcttctc[C/T]gaatttccgc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCATTAGATTTTTGGGTGATTTACTTCTAGAAAGTTCTGGAATCTTCTC</left_flank>
        <right_flank>GAATTTCCGCAAAAACAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGACATCGAATTCTCAAAGAACCCTACTTCGACGCCGCCATCAAGGCCTCCACAAAAGCACGATGATCGAATCCAGGGGTGTTGAAGAAGTTGGGATCCTCTCTGGAGAGCATATAGGCTCTGTGGACCGCACGAGCCACCACCGATTCGTCATGATCGTTCATGAGCTTCACAAGATCCGGAAGAGAGAATTCGGACATGTCGTTGGATCCCTCGTAGGTCAGAAGATCCATAACGGATTGTTTGAGTTGTTGAGTTGGCATATGCATCAGTTCCACGATGGAAGAGGAGGAGTTTAGGGAGGTTGTGGCCTCTGCGGCGGAGGTTGGAGGTGTCCAATCGGGGAACATCGCCGCGCGAATCCGAGAAGTGCGGGTTTCGACTTCATGGTCTGAAAGACGGCTTTTTTGAGTGAATTTTGGAGATTTGTCGATAGAAGAATGTATTTCTCATTAGATTTTTGGGTGATTTACTTCTAGAAAGTTCTGGAATCTTCTCCGAATTTCCGCAAAAACAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGGGGCTTCATTTGATTTTTTGCAGAATTTTTAGACCTTTTTAGGGTTTTCAGGCATTTTTGAAGATTCTTTTTCGATTTTTCGTCTGAAAAGTCATGGATCGGTGTTCATGAGGATTACTGTAGATTACTATAGAAAACGAATTTTACTTCTGTAGTTTTCTTTTGCAAACAAAATTACGTCAAAATGCAAATTAAAAAAACTAAAAGAAACAAGTTTTCTACAGTAACCTACAGTAATCCGGAACACCGCACTATCAATTTTCAGACAAAAAAATCGGAAAAATCGAAAAACGAATCTTCAAAAATAGCTGAAAAACCAAAAAAGGTCTAAAAATTTTGCAAAAAAATCGTAGAAAATTCCCTTCAAAAATGGAATTTTTCCGAAAAAAAACCGCTTGAAATTGCGTATTCGAGTCAAATGGGGTCCATTTTAGCTTGTTAAAAACCT</canonical>
            <polymorphic>TTGACATCGAATTCTCAAAGAACCCTACTTCGACGCCGCCATCAAGGCCTCCACAAAAGCACGATGATCGAATCCAGGGGTGTTGAAGAAGTTGGGATCCTCTCTGGAGAGCATATAGGCTCTGTGGACCGCACGAGCCACCACCGATTCGTCATGATCGTTCATGAGCTTCACAAGATCCGGAAGAGAGAATTCGGACATGTCGTTGGATCCCTCGTAGGTCAGAAGATCCATAACGGATTGTTTGAGTTGTTGAGTTGGCATATGCATCAGTTCCACGATGGAAGAGGAGGAGTTTAGGGAGGTTGTGGCCTCTGCGGCGGAGGTTGGAGGTGTCCAATCGGGGAACATCGCCGCGCGAATCCGAGAAGTGCGGGTTTCGACTTCATGGTCTGAAAGACGGCTTTTTTGAGTGAATTTTGGAGATTTGTCGATAGAAGAATGTATTTCTCATTAGATTTTTGGGTGATTTACTTCTAGAAAGTTCTGGAATCTTCTCYGAATTTCCGCAAAAACAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGGGGCTTCATTTGATTTTTTGCAGAATTTTTAGACCTTTTTAGGGTTTTCAGGCATTTTTGAAGATTCTTTTTCGATTTTTCGTCTGAAAAGTCATGGATCGGTGTTCATGAGGATTACTGTAGATTACTATAGAAAACGAATTTTACTTCTGTAGTTTTCTTTTGCAAACAAAATTACGTCAAAATGCAAATTAAAAAAACTAAAAGAAACAAGTTTTCTACAGTAACCTACAGTAATCCGGAACACCGCACTATCAATTTTCAGACAAAAAAATCGGAAAAATCGAAAAACGAATCTTCAAAAATAGCTGAAAAACCAAAAAAGGTCTAAAAATTTTGCAAAAAAATCGTAGAAAATTCCCTTCAAAAATGGAATTTTTCCGAAAAAAAACCGCTTGAAATTGCGTATTCGAGTCAAATGGGGTCCATTTTAGCTTGTTAAAAACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCATTAGATTTTTGGGTGAT</pcr_primer_p1>
		<pcr_primer_p2>ACTCGAATACGCAATTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>519</pcr_amplicon_size>
		<canonical_amplicon>TCTCATTAGATTTTTGGGTGATTTACTTCTAGAAAGTTCTGGAATCTTCTCCGAATTTCCGCAAAAACAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGGGGCTTCATTTGATTTTTTGCAGAATTTTTAGACCTTTTTAGGGTTTTCAGGCATTTTTGAAGATTCTTTTTCGATTTTTCGTCTGAAAAGTCATGGATCGGTGTTCATGAGGATTACTGTAGATTACTATAGAAAACGAATTTTACTTCTGTAGTTTTCTTTTGCAAACAAAATTACGTCAAAATGCAAATTAAAAAAACTAAAAGAAACAAGTTTTCTACAGTAACCTACAGTAATCCGGAACACCGCACTATCAATTTTCAGACAAAAAAATCGGAAAAATCGAAAAACGAATCTTCAAAAATAGCTGAAAAACCAAAAAAGGTCTAAAAATTTTGCAAAAAAATCGTAGAAAATTCCCTTCAAAAATGGAATTTTTCCGAAAAAAAACCGCTTGAAATTGCGTATTCGAGT</canonical_amplicon>
		<polymorphic_amplicon>TCTCATTAGATTTTTGGGTGATTTACTTCTAGAAAGTTCTGGAATCTTCTCYGAATTTCCGCAAAAACAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGGGGCTTCATTTGATTTTTTGCAGAATTTTTAGACCTTTTTAGGGTTTTCAGGCATTTTTGAAGATTCTTTTTCGATTTTTCGTCTGAAAAGTCATGGATCGGTGTTCATGAGGATTACTGTAGATTACTATAGAAAACGAATTTTACTTCTGTAGTTTTCTTTTGCAAACAAAATTACGTCAAAATGCAAATTAAAAAAACTAAAAGAAACAAGTTTTCTACAGTAACCTACAGTAATCCGGAACACCGCACTATCAATTTTCAGACAAAAAAATCGGAAAAATCGAAAAACGAATCTTCAAAAATAGCTGAAAAACCAAAAAAGGTCTAAAAATTTTGCAAAAAAATCGTAGAAAATTCCCTTCAAAAATGGAATTTTTCCGAAAAAAAACCGCTTGAAATTGCGTATTCGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23947</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1111254</contig_pos>
        <strand></strand>
        <context>tccgcaaaaa[C/A]agagagaaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GTGATTTACTTCTAGAAAGTTCTGGAATCTTCTCCGAATTTCCGCAAAAA</left_flank>
        <right_flank>AGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGGGGCTTCATTTGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGAACCCTACTTCGACGCCGCCATCAAGGCCTCCACAAAAGCACGATGATCGAATCCAGGGGTGTTGAAGAAGTTGGGATCCTCTCTGGAGAGCATATAGGCTCTGTGGACCGCACGAGCCACCACCGATTCGTCATGATCGTTCATGAGCTTCACAAGATCCGGAAGAGAGAATTCGGACATGTCGTTGGATCCCTCGTAGGTCAGAAGATCCATAACGGATTGTTTGAGTTGTTGAGTTGGCATATGCATCAGTTCCACGATGGAAGAGGAGGAGTTTAGGGAGGTTGTGGCCTCTGCGGCGGAGGTTGGAGGTGTCCAATCGGGGAACATCGCCGCGCGAATCCGAGAAGTGCGGGTTTCGACTTCATGGTCTGAAAGACGGCTTTTTTGAGTGAATTTTGGAGATTTGTCGATAGAAGAATGTATTTCTCATTAGATTTTTGGGTGATTTACTTCTAGAAAGTTCTGGAATCTTCTCCGAATTTCCGCAAAAACAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGGGGCTTCATTTGATTTTTTGCAGAATTTTTAGACCTTTTTAGGGTTTTCAGGCATTTTTGAAGATTCTTTTTCGATTTTTCGTCTGAAAAGTCATGGATCGGTGTTCATGAGGATTACTGTAGATTACTATAGAAAACGAATTTTACTTCTGTAGTTTTCTTTTGCAAACAAAATTACGTCAAAATGCAAATTAAAAAAACTAAAAGAAACAAGTTTTCTACAGTAACCTACAGTAATCCGGAACACCGCACTATCAATTTTCAGACAAAAAAATCGGAAAAATCGAAAAACGAATCTTCAAAAATAGCTGAAAAACCAAAAAAGGTCTAAAAATTTTGCAAAAAAATCGTAGAAAATTCCCTTCAAAAATGGAATTTTTCCGAAAAAAAACCGCTTGAAATTGCGTATTCGAGTCAAATGGGGTCCATTTTAGCTTGTTAAAAACCTAAAAATCAATTTTTCA</canonical>
            <polymorphic>AAAGAACCCTACTTCGACGCCGCCATCAAGGCCTCCACAAAAGCACGATGATCGAATCCAGGGGTGTTGAAGAAGTTGGGATCCTCTCTGGAGAGCATATAGGCTCTGTGGACCGCACGAGCCACCACCGATTCGTCATGATCGTTCATGAGCTTCACAAGATCCGGAAGAGAGAATTCGGACATGTCGTTGGATCCCTCGTAGGTCAGAAGATCCATAACGGATTGTTTGAGTTGTTGAGTTGGCATATGCATCAGTTCCACGATGGAAGAGGAGGAGTTTAGGGAGGTTGTGGCCTCTGCGGCGGAGGTTGGAGGTGTCCAATCGGGGAACATCGCCGCGCGAATCCGAGAAGTGCGGGTTTCGACTTCATGGTCTGAAAGACGGCTTTTTTGAGTGAATTTTGGAGATTTGTCGATAGAAGAATGTATTTCTCATTAGATTTTTGGGTGATTTACTTCTAGAAAGTTCTGGAATCTTCTCCGAATTTCCGCAAAAAMAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGGGGCTTCATTTGATTTTTTGCAGAATTTTTAGACCTTTTTAGGGTTTTCAGGCATTTTTGAAGATTCTTTTTCGATTTTTCGTCTGAAAAGTCATGGATCGGTGTTCATGAGGATTACTGTAGATTACTATAGAAAACGAATTTTACTTCTGTAGTTTTCTTTTGCAAACAAAATTACGTCAAAATGCAAATTAAAAAAACTAAAAGAAACAAGTTTTCTACAGTAACCTACAGTAATCCGGAACACCGCACTATCAATTTTCAGACAAAAAAATCGGAAAAATCGAAAAACGAATCTTCAAAAATAGCTGAAAAACCAAAAAAGGTCTAAAAATTTTGCAAAAAAATCGTAGAAAATTCCCTTCAAAAATGGAATTTTTCCGAAAAAAAACCGCTTGAAATTGCGTATTCGAGTCAAATGGGGTCCATTTTAGCTTGTTAAAAACCTAAAAATCAATTTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTAGATTTTTGGGTGATTT</pcr_primer_p1>
		<pcr_primer_p2>ACTCGAATACGCAATTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>517</pcr_amplicon_size>
		<canonical_amplicon>TCATTAGATTTTTGGGTGATTTACTTCTAGAAAGTTCTGGAATCTTCTCCGAATTTCCGCAAAAACAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGGGGCTTCATTTGATTTTTTGCAGAATTTTTAGACCTTTTTAGGGTTTTCAGGCATTTTTGAAGATTCTTTTTCGATTTTTCGTCTGAAAAGTCATGGATCGGTGTTCATGAGGATTACTGTAGATTACTATAGAAAACGAATTTTACTTCTGTAGTTTTCTTTTGCAAACAAAATTACGTCAAAATGCAAATTAAAAAAACTAAAAGAAACAAGTTTTCTACAGTAACCTACAGTAATCCGGAACACCGCACTATCAATTTTCAGACAAAAAAATCGGAAAAATCGAAAAACGAATCTTCAAAAATAGCTGAAAAACCAAAAAAGGTCTAAAAATTTTGCAAAAAAATCGTAGAAAATTCCCTTCAAAAATGGAATTTTTCCGAAAAAAAACCGCTTGAAATTGCGTATTCGAGT</canonical_amplicon>
		<polymorphic_amplicon>TCATTAGATTTTTGGGTGATTTACTTCTAGAAAGTTCTGGAATCTTCTCCGAATTTCCGCAAAAAMAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGGGGCTTCATTTGATTTTTTGCAGAATTTTTAGACCTTTTTAGGGTTTTCAGGCATTTTTGAAGATTCTTTTTCGATTTTTCGTCTGAAAAGTCATGGATCGGTGTTCATGAGGATTACTGTAGATTACTATAGAAAACGAATTTTACTTCTGTAGTTTTCTTTTGCAAACAAAATTACGTCAAAATGCAAATTAAAAAAACTAAAAGAAACAAGTTTTCTACAGTAACCTACAGTAATCCGGAACACCGCACTATCAATTTTCAGACAAAAAAATCGGAAAAATCGAAAAACGAATCTTCAAAAATAGCTGAAAAACCAAAAAAGGTCTAAAAATTTTGCAAAAAAATCGTAGAAAATTCCCTTCAAAAATGGAATTTTTCCGAAAAAAAACCGCTTGAAATTGCGTATTCGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23948</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1111292</contig_pos>
        <strand></strand>
        <context>gaaaaatagg[G/A]gyttcatttg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTCCGCAAAAACAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGG</left_flank>
        <right_flank>GCTTCATTTGATTTTTTGCAGAATTTTTAGACCTTTTTAGGGTTTTCAGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAGCACGATGATCGAATCCAGGGGTGTTGAAGAAGTTGGGATCCTCTCTGGAGAGCATATAGGCTCTGTGGACCGCACGAGCCACCACCGATTCGTCATGATCGTTCATGAGCTTCACAAGATCCGGAAGAGAGAATTCGGACATGTCGTTGGATCCCTCGTAGGTCAGAAGATCCATAACGGATTGTTTGAGTTGTTGAGTTGGCATATGCATCAGTTCCACGATGGAAGAGGAGGAGTTTAGGGAGGTTGTGGCCTCTGCGGCGGAGGTTGGAGGTGTCCAATCGGGGAACATCGCCGCGCGAATCCGAGAAGTGCGGGTTTCGACTTCATGGTCTGAAAGACGGCTTTTTTGAGTGAATTTTGGAGATTTGTCGATAGAAGAATGTATTTCTCATTAGATTTTTGGGTGATTTACTTCTAGAAAGTTCTGGAATCTTCTCCGAATTTCCGCAAAAACAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGGGGCTTCATTTGATTTTTTGCAGAATTTTTAGACCTTTTTAGGGTTTTCAGGCATTTTTGAAGATTCTTTTTCGATTTTTCGTCTGAAAAGTCATGGATCGGTGTTCATGAGGATTACTGTAGATTACTATAGAAAACGAATTTTACTTCTGTAGTTTTCTTTTGCAAACAAAATTACGTCAAAATGCAAATTAAAAAAACTAAAAGAAACAAGTTTTCTACAGTAACCTACAGTAATCCGGAACACCGCACTATCAATTTTCAGACAAAAAAATCGGAAAAATCGAAAAACGAATCTTCAAAAATAGCTGAAAAACCAAAAAAGGTCTAAAAATTTTGCAAAAAAATCGTAGAAAATTCCCTTCAAAAATGGAATTTTTCCGAAAAAAAACCGCTTGAAATTGCGTATTCGAGTCAAATGGGGTCCATTTTAGCTTGTTAAAAACCTAAAAATCAATTTTTCAGCGCCTAAAAGTGGTCTTAGAGGCCGAATTTTTTGTAA</canonical>
            <polymorphic>AAAAGCACGATGATCGAATCCAGGGGTGTTGAAGAAGTTGGGATCCTCTCTGGAGAGCATATAGGCTCTGTGGACCGCACGAGCCACCACCGATTCGTCATGATCGTTCATGAGCTTCACAAGATCCGGAAGAGAGAATTCGGACATGTCGTTGGATCCCTCGTAGGTCAGAAGATCCATAACGGATTGTTTGAGTTGTTGAGTTGGCATATGCATCAGTTCCACGATGGAAGAGGAGGAGTTTAGGGAGGTTGTGGCCTCTGCGGCGGAGGTTGGAGGTGTCCAATCGGGGAACATCGCCGCGCGAATCCGAGAAGTGCGGGTTTCGACTTCATGGTCTGAAAGACGGCTTTTTTGAGTGAATTTTGGAGATTTGTCGATAGAAGAATGTATTTCTCATTAGATTTTTGGGTGATTTACTTCTAGAAAGTTCTGGAATCTTCTCCGAATTTCCGCAAAAACAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGGRGCTTCATTTGATTTTTTGCAGAATTTTTAGACCTTTTTAGGGTTTTCAGGCATTTTTGAAGATTCTTTTTCGATTTTTCGTCTGAAAAGTCATGGATCGGTGTTCATGAGGATTACTGTAGATTACTATAGAAAACGAATTTTACTTCTGTAGTTTTCTTTTGCAAACAAAATTACGTCAAAATGCAAATTAAAAAAACTAAAAGAAACAAGTTTTCTACAGTAACCTACAGTAATCCGGAACACCGCACTATCAATTTTCAGACAAAAAAATCGGAAAAATCGAAAAACGAATCTTCAAAAATAGCTGAAAAACCAAAAAAGGTCTAAAAATTTTGCAAAAAAATCGTAGAAAATTCCCTTCAAAAATGGAATTTTTCCGAAAAAAAACCGCTTGAAATTGCGTATTCGAGTCAAATGGGGTCCATTTTAGCTTGTTAAAAACCTAAAAATCAATTTTTCAGCGCCTAAAAGTGGTCTTAGAGGCCGAATTTTTTGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>305 152 143 126 92 65 53 31 18 15</canonical_bands>
                <polymorphic_bands>457 143 126 92 65 53 31 18 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATTAGATTTTTGGGTGATTT</pcr_primer_p1>
		<pcr_primer_p2>ACTCGAATACGCAATTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>517</pcr_amplicon_size>
		<canonical_amplicon>TCATTAGATTTTTGGGTGATTTACTTCTAGAAAGTTCTGGAATCTTCTCCGAATTTCCGCAAAAACAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGGGGCTTCATTTGATTTTTTGCAGAATTTTTAGACCTTTTTAGGGTTTTCAGGCATTTTTGAAGATTCTTTTTCGATTTTTCGTCTGAAAAGTCATGGATCGGTGTTCATGAGGATTACTGTAGATTACTATAGAAAACGAATTTTACTTCTGTAGTTTTCTTTTGCAAACAAAATTACGTCAAAATGCAAATTAAAAAAACTAAAAGAAACAAGTTTTCTACAGTAACCTACAGTAATCCGGAACACCGCACTATCAATTTTCAGACAAAAAAATCGGAAAAATCGAAAAACGAATCTTCAAAAATAGCTGAAAAACCAAAAAAGGTCTAAAAATTTTGCAAAAAAATCGTAGAAAATTCCCTTCAAAAATGGAATTTTTCCGAAAAAAAACCGCTTGAAATTGCGTATTCGAGT</canonical_amplicon>
		<polymorphic_amplicon>TCATTAGATTTTTGGGTGATTTACTTCTAGAAAGTTCTGGAATCTTCTCCGAATTTCCGCAAAAACAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGGRGCTTCATTTGATTTTTTGCAGAATTTTTAGACCTTTTTAGGGTTTTCAGGCATTTTTGAAGATTCTTTTTCGATTTTTCGTCTGAAAAGTCATGGATCGGTGTTCATGAGGATTACTGTAGATTACTATAGAAAACGAATTTTACTTCTGTAGTTTTCTTTTGCAAACAAAATTACGTCAAAATGCAAATTAAAAAAACTAAAAGAAACAAGTTTTCTACAGTAACCTACAGTAATCCGGAACACCGCACTATCAATTTTCAGACAAAAAAATCGGAAAAATCGAAAAACGAATCTTCAAAAATAGCTGAAAAACCAAAAAAGGTCTAAAAATTTTGCAAAAAAATCGTAGAAAATTCCCTTCAAAAATGGAATTTTTCCGAAAAAAAACCGCTTGAAATTGCGTATTCGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23949</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1111294</contig_pos>
        <strand></strand>
        <context>aaaataggrg[C/T]ttcatttgat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCGCAAAAACAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGGGG</left_flank>
        <right_flank>TTCATTTGATTTTTTGCAGAATTTTTAGACCTTTTTAGGGTTTTCAGGCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCACGATGATCGAATCCAGGGGTGTTGAAGAAGTTGGGATCCTCTCTGGAGAGCATATAGGCTCTGTGGACCGCACGAGCCACCACCGATTCGTCATGATCGTTCATGAGCTTCACAAGATCCGGAAGAGAGAATTCGGACATGTCGTTGGATCCCTCGTAGGTCAGAAGATCCATAACGGATTGTTTGAGTTGTTGAGTTGGCATATGCATCAGTTCCACGATGGAAGAGGAGGAGTTTAGGGAGGTTGTGGCCTCTGCGGCGGAGGTTGGAGGTGTCCAATCGGGGAACATCGCCGCGCGAATCCGAGAAGTGCGGGTTTCGACTTCATGGTCTGAAAGACGGCTTTTTTGAGTGAATTTTGGAGATTTGTCGATAGAAGAATGTATTTCTCATTAGATTTTTGGGTGATTTACTTCTAGAAAGTTCTGGAATCTTCTCCGAATTTCCGCAAAAACAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGGGGCTTCATTTGATTTTTTGCAGAATTTTTAGACCTTTTTAGGGTTTTCAGGCATTTTTGAAGATTCTTTTTCGATTTTTCGTCTGAAAAGTCATGGATCGGTGTTCATGAGGATTACTGTAGATTACTATAGAAAACGAATTTTACTTCTGTAGTTTTCTTTTGCAAACAAAATTACGTCAAAATGCAAATTAAAAAAACTAAAAGAAACAAGTTTTCTACAGTAACCTACAGTAATCCGGAACACCGCACTATCAATTTTCAGACAAAAAAATCGGAAAAATCGAAAAACGAATCTTCAAAAATAGCTGAAAAACCAAAAAAGGTCTAAAAATTTTGCAAAAAAATCGTAGAAAATTCCCTTCAAAAATGGAATTTTTCCGAAAAAAAACCGCTTGAAATTGCGTATTCGAGTCAAATGGGGTCCATTTTAGCTTGTTAAAAACCTAAAAATCAATTTTTCAGCGCCTAAAAGTGGTCTTAGAGGCCGAATTTTTTGTAAAA</canonical>
            <polymorphic>AAGCACGATGATCGAATCCAGGGGTGTTGAAGAAGTTGGGATCCTCTCTGGAGAGCATATAGGCTCTGTGGACCGCACGAGCCACCACCGATTCGTCATGATCGTTCATGAGCTTCACAAGATCCGGAAGAGAGAATTCGGACATGTCGTTGGATCCCTCGTAGGTCAGAAGATCCATAACGGATTGTTTGAGTTGTTGAGTTGGCATATGCATCAGTTCCACGATGGAAGAGGAGGAGTTTAGGGAGGTTGTGGCCTCTGCGGCGGAGGTTGGAGGTGTCCAATCGGGGAACATCGCCGCGCGAATCCGAGAAGTGCGGGTTTCGACTTCATGGTCTGAAAGACGGCTTTTTTGAGTGAATTTTGGAGATTTGTCGATAGAAGAATGTATTTCTCATTAGATTTTTGGGTGATTTACTTCTAGAAAGTTCTGGAATCTTCTCCGAATTTCCGCAAAAACAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGGGGYTTCATTTGATTTTTTGCAGAATTTTTAGACCTTTTTAGGGTTTTCAGGCATTTTTGAAGATTCTTTTTCGATTTTTCGTCTGAAAAGTCATGGATCGGTGTTCATGAGGATTACTGTAGATTACTATAGAAAACGAATTTTACTTCTGTAGTTTTCTTTTGCAAACAAAATTACGTCAAAATGCAAATTAAAAAAACTAAAAGAAACAAGTTTTCTACAGTAACCTACAGTAATCCGGAACACCGCACTATCAATTTTCAGACAAAAAAATCGGAAAAATCGAAAAACGAATCTTCAAAAATAGCTGAAAAACCAAAAAAGGTCTAAAAATTTTGCAAAAAAATCGTAGAAAATTCCCTTCAAAAATGGAATTTTTCCGAAAAAAAACCGCTTGAAATTGCGTATTCGAGTCAAATGGGGTCCATTTTAGCTTGTTAAAAACCTAAAAATCAATTTTTCAGCGCCTAAAAGTGGTCTTAGAGGCCGAATTTTTTGTAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>305 152 143 126 92 63 53 31 18 17</canonical_bands>
                <polymorphic_bands>457 143 126 92 63 53 31 18 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATTAGATTTTTGGGTGATTT</pcr_primer_p1>
		<pcr_primer_p2>ACTCGAATACGCAATTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>517</pcr_amplicon_size>
		<canonical_amplicon>TCATTAGATTTTTGGGTGATTTACTTCTAGAAAGTTCTGGAATCTTCTCCGAATTTCCGCAAAAACAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGGGGCTTCATTTGATTTTTTGCAGAATTTTTAGACCTTTTTAGGGTTTTCAGGCATTTTTGAAGATTCTTTTTCGATTTTTCGTCTGAAAAGTCATGGATCGGTGTTCATGAGGATTACTGTAGATTACTATAGAAAACGAATTTTACTTCTGTAGTTTTCTTTTGCAAACAAAATTACGTCAAAATGCAAATTAAAAAAACTAAAAGAAACAAGTTTTCTACAGTAACCTACAGTAATCCGGAACACCGCACTATCAATTTTCAGACAAAAAAATCGGAAAAATCGAAAAACGAATCTTCAAAAATAGCTGAAAAACCAAAAAAGGTCTAAAAATTTTGCAAAAAAATCGTAGAAAATTCCCTTCAAAAATGGAATTTTTCCGAAAAAAAACCGCTTGAAATTGCGTATTCGAGT</canonical_amplicon>
		<polymorphic_amplicon>TCATTAGATTTTTGGGTGATTTACTTCTAGAAAGTTCTGGAATCTTCTCCGAATTTCCGCAAAAACAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGGGGYTTCATTTGATTTTTTGCAGAATTTTTAGACCTTTTTAGGGTTTTCAGGCATTTTTGAAGATTCTTTTTCGATTTTTCGTCTGAAAAGTCATGGATCGGTGTTCATGAGGATTACTGTAGATTACTATAGAAAACGAATTTTACTTCTGTAGTTTTCTTTTGCAAACAAAATTACGTCAAAATGCAAATTAAAAAAACTAAAAGAAACAAGTTTTCTACAGTAACCTACAGTAATCCGGAACACCGCACTATCAATTTTCAGACAAAAAAATCGGAAAAATCGAAAAACGAATCTTCAAAAATAGCTGAAAAACCAAAAAAGGTCTAAAAATTTTGCAAAAAAATCGTAGAAAATTCCCTTCAAAAATGGAATTTTTCCGAAAAAAAACCGCTTGAAATTGCGTATTCGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23950</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1111381</contig_pos>
        <strand></strand>
        <context>cgtctgaaaa[G/T]tcatggatcg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGGGTTTTCAGGCATTTTTGAAGATTCTTTTTCGATTTTTCGTCTGAAAA</left_flank>
        <right_flank>TCATGGATCGGTGTTCATGAGGATTACTGTAGATTACTATAGAAAACGAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGATTCGTCATGATCGTTCATGAGCTTCACAAGATCCGGAAGAGAGAATTCGGACATGTCGTTGGATCCCTCGTAGGTCAGAAGATCCATAACGGATTGTTTGAGTTGTTGAGTTGGCATATGCATCAGTTCCACGATGGAAGAGGAGGAGTTTAGGGAGGTTGTGGCCTCTGCGGCGGAGGTTGGAGGTGTCCAATCGGGGAACATCGCCGCGCGAATCCGAGAAGTGCGGGTTTCGACTTCATGGTCTGAAAGACGGCTTTTTTGAGTGAATTTTGGAGATTTGTCGATAGAAGAATGTATTTCTCATTAGATTTTTGGGTGATTTACTTCTAGAAAGTTCTGGAATCTTCTCCGAATTTCCGCAAAAACAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGGGGCTTCATTTGATTTTTTGCAGAATTTTTAGACCTTTTTAGGGTTTTCAGGCATTTTTGAAGATTCTTTTTCGATTTTTCGTCTGAAAAGTCATGGATCGGTGTTCATGAGGATTACTGTAGATTACTATAGAAAACGAATTTTACTTCTGTAGTTTTCTTTTGCAAACAAAATTACGTCAAAATGCAAATTAAAAAAACTAAAAGAAACAAGTTTTCTACAGTAACCTACAGTAATCCGGAACACCGCACTATCAATTTTCAGACAAAAAAATCGGAAAAATCGAAAAACGAATCTTCAAAAATAGCTGAAAAACCAAAAAAGGTCTAAAAATTTTGCAAAAAAATCGTAGAAAATTCCCTTCAAAAATGGAATTTTTCCGAAAAAAAACCGCTTGAAATTGCGTATTCGAGTCAAATGGGGTCCATTTTAGCTTGTTAAAAACCTAAAAATCAATTTTTCAGCGCCTAAAAGTGGTCTTAGAGGCCGAATTTTTTGTAAAATCACTGAAAATTGAAATTTTTTCAATTTTTCAGAAGTTTCCAGAAGACGAAAACTTAGATTTTTCGCTTTTTTAAGCGAATTTTCAT</canonical>
            <polymorphic>CCGATTCGTCATGATCGTTCATGAGCTTCACAAGATCCGGAAGAGAGAATTCGGACATGTCGTTGGATCCCTCGTAGGTCAGAAGATCCATAACGGATTGTTTGAGTTGTTGAGTTGGCATATGCATCAGTTCCACGATGGAAGAGGAGGAGTTTAGGGAGGTTGTGGCCTCTGCGGCGGAGGTTGGAGGTGTCCAATCGGGGAACATCGCCGCGCGAATCCGAGAAGTGCGGGTTTCGACTTCATGGTCTGAAAGACGGCTTTTTTGAGTGAATTTTGGAGATTTGTCGATAGAAGAATGTATTTCTCATTAGATTTTTGGGTGATTTACTTCTAGAAAGTTCTGGAATCTTCTCCGAATTTCCGCAAAAACAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGGGGCTTCATTTGATTTTTTGCAGAATTTTTAGACCTTTTTAGGGTTTTCAGGCATTTTTGAAGATTCTTTTTCGATTTTTCGTCTGAAAAKTCATGGATCGGTGTTCATGAGGATTACTGTAGATTACTATAGAAAACGAATTTTACTTCTGTAGTTTTCTTTTGCAAACAAAATTACGTCAAAATGCAAATTAAAAAAACTAAAAGAAACAAGTTTTCTACAGTAACCTACAGTAATCCGGAACACCGCACTATCAATTTTCAGACAAAAAAATCGGAAAAATCGAAAAACGAATCTTCAAAAATAGCTGAAAAACCAAAAAAGGTCTAAAAATTTTGCAAAAAAATCGTAGAAAATTCCCTTCAAAAATGGAATTTTTCCGAAAAAAAACCGCTTGAAATTGCGTATTCGAGTCAAATGGGGTCCATTTTAGCTTGTTAAAAACCTAAAAATCAATTTTTCAGCGCCTAAAAGTGGTCTTAGAGGCCGAATTTTTTGTAAAATCACTGAAAATTGAAATTTTTTCAATTTTTCAGAAGTTTCCAGAAGACGAAAACTTAGATTTTTCGCTTTTTTAAGCGAATTTTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTAGATTTTTGGGTGATTT</pcr_primer_p1>
		<pcr_primer_p2>ACTCGAATACGCAATTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>517</pcr_amplicon_size>
		<canonical_amplicon>TCATTAGATTTTTGGGTGATTTACTTCTAGAAAGTTCTGGAATCTTCTCCGAATTTCCGCAAAAACAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGGGGCTTCATTTGATTTTTTGCAGAATTTTTAGACCTTTTTAGGGTTTTCAGGCATTTTTGAAGATTCTTTTTCGATTTTTCGTCTGAAAAGTCATGGATCGGTGTTCATGAGGATTACTGTAGATTACTATAGAAAACGAATTTTACTTCTGTAGTTTTCTTTTGCAAACAAAATTACGTCAAAATGCAAATTAAAAAAACTAAAAGAAACAAGTTTTCTACAGTAACCTACAGTAATCCGGAACACCGCACTATCAATTTTCAGACAAAAAAATCGGAAAAATCGAAAAACGAATCTTCAAAAATAGCTGAAAAACCAAAAAAGGTCTAAAAATTTTGCAAAAAAATCGTAGAAAATTCCCTTCAAAAATGGAATTTTTCCGAAAAAAAACCGCTTGAAATTGCGTATTCGAGT</canonical_amplicon>
		<polymorphic_amplicon>TCATTAGATTTTTGGGTGATTTACTTCTAGAAAGTTCTGGAATCTTCTCCGAATTTCCGCAAAAACAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGGGGCTTCATTTGATTTTTTGCAGAATTTTTAGACCTTTTTAGGGTTTTCAGGCATTTTTGAAGATTCTTTTTCGATTTTTCGTCTGAAAAKTCATGGATCGGTGTTCATGAGGATTACTGTAGATTACTATAGAAAACGAATTTTACTTCTGTAGTTTTCTTTTGCAAACAAAATTACGTCAAAATGCAAATTAAAAAAACTAAAAGAAACAAGTTTTCTACAGTAACCTACAGTAATCCGGAACACCGCACTATCAATTTTCAGACAAAAAAATCGGAAAAATCGAAAAACGAATCTTCAAAAATAGCTGAAAAACCAAAAAAGGTCTAAAAATTTTGCAAAAAAATCGTAGAAAATTCCCTTCAAAAATGGAATTTTTCCGAAAAAAAACCGCTTGAAATTGCGTATTCGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23951</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1111420</contig_pos>
        <strand></strand>
        <context>gtagattact[A/G]tagaaaacga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGTCTGAAAAGTCATGGATCGGTGTTCATGAGGATTACTGTAGATTACT</left_flank>
        <right_flank>TAGAAAACGAATTTTACTTCTGTAGTTTTCTTTTGCAAACAAAATTACGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGAGAGAATTCGGACATGTCGTTGGATCCCTCGTAGGTCAGAAGATCCATAACGGATTGTTTGAGTTGTTGAGTTGGCATATGCATCAGTTCCACGATGGAAGAGGAGGAGTTTAGGGAGGTTGTGGCCTCTGCGGCGGAGGTTGGAGGTGTCCAATCGGGGAACATCGCCGCGCGAATCCGAGAAGTGCGGGTTTCGACTTCATGGTCTGAAAGACGGCTTTTTTGAGTGAATTTTGGAGATTTGTCGATAGAAGAATGTATTTCTCATTAGATTTTTGGGTGATTTACTTCTAGAAAGTTCTGGAATCTTCTCCGAATTTCCGCAAAAACAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGGGGCTTCATTTGATTTTTTGCAGAATTTTTAGACCTTTTTAGGGTTTTCAGGCATTTTTGAAGATTCTTTTTCGATTTTTCGTCTGAAAAGTCATGGATCGGTGTTCATGAGGATTACTGTAGATTACTATAGAAAACGAATTTTACTTCTGTAGTTTTCTTTTGCAAACAAAATTACGTCAAAATGCAAATTAAAAAAACTAAAAGAAACAAGTTTTCTACAGTAACCTACAGTAATCCGGAACACCGCACTATCAATTTTCAGACAAAAAAATCGGAAAAATCGAAAAACGAATCTTCAAAAATAGCTGAAAAACCAAAAAAGGTCTAAAAATTTTGCAAAAAAATCGTAGAAAATTCCCTTCAAAAATGGAATTTTTCCGAAAAAAAACCGCTTGAAATTGCGTATTCGAGTCAAATGGGGTCCATTTTAGCTTGTTAAAAACCTAAAAATCAATTTTTCAGCGCCTAAAAGTGGTCTTAGAGGCCGAATTTTTTGTAAAATCACTGAAAATTGAAATTTTTTCAATTTTTCAGAAGTTTCCAGAAGACGAAAACTTAGATTTTTCGCTTTTTTAAGCGAATTTTCATGGTTTTCCGAGATTTTTTCATCGTTTTCTACACATTTTA</canonical>
            <polymorphic>GAAGAGAGAATTCGGACATGTCGTTGGATCCCTCGTAGGTCAGAAGATCCATAACGGATTGTTTGAGTTGTTGAGTTGGCATATGCATCAGTTCCACGATGGAAGAGGAGGAGTTTAGGGAGGTTGTGGCCTCTGCGGCGGAGGTTGGAGGTGTCCAATCGGGGAACATCGCCGCGCGAATCCGAGAAGTGCGGGTTTCGACTTCATGGTCTGAAAGACGGCTTTTTTGAGTGAATTTTGGAGATTTGTCGATAGAAGAATGTATTTCTCATTAGATTTTTGGGTGATTTACTTCTAGAAAGTTCTGGAATCTTCTCCGAATTTCCGCAAAAACAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGGGGCTTCATTTGATTTTTTGCAGAATTTTTAGACCTTTTTAGGGTTTTCAGGCATTTTTGAAGATTCTTTTTCGATTTTTCGTCTGAAAAGTCATGGATCGGTGTTCATGAGGATTACTGTAGATTACTRTAGAAAACGAATTTTACTTCTGTAGTTTTCTTTTGCAAACAAAATTACGTCAAAATGCAAATTAAAAAAACTAAAAGAAACAAGTTTTCTACAGTAACCTACAGTAATCCGGAACACCGCACTATCAATTTTCAGACAAAAAAATCGGAAAAATCGAAAAACGAATCTTCAAAAATAGCTGAAAAACCAAAAAAGGTCTAAAAATTTTGCAAAAAAATCGTAGAAAATTCCCTTCAAAAATGGAATTTTTCCGAAAAAAAACCGCTTGAAATTGCGTATTCGAGTCAAATGGGGTCCATTTTAGCTTGTTAAAAACCTAAAAATCAATTTTTCAGCGCCTAAAAGTGGTCTTAGAGGCCGAATTTTTTGTAAAATCACTGAAAATTGAAATTTTTTCAATTTTTCAGAAGTTTCCAGAAGACGAAAACTTAGATTTTTCGCTTTTTTAAGCGAATTTTCATGGTTTTCCGAGATTTTTTCATCGTTTTCTACACATTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>488 401 69 22 10 10</canonical_bands>
                <polymorphic_bands>488 401 69 32 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATTAGATTTTTGGGTGATTT</pcr_primer_p1>
		<pcr_primer_p2>ACTCGAATACGCAATTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>517</pcr_amplicon_size>
		<canonical_amplicon>TCATTAGATTTTTGGGTGATTTACTTCTAGAAAGTTCTGGAATCTTCTCCGAATTTCCGCAAAAACAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGGGGCTTCATTTGATTTTTTGCAGAATTTTTAGACCTTTTTAGGGTTTTCAGGCATTTTTGAAGATTCTTTTTCGATTTTTCGTCTGAAAAGTCATGGATCGGTGTTCATGAGGATTACTGTAGATTACTATAGAAAACGAATTTTACTTCTGTAGTTTTCTTTTGCAAACAAAATTACGTCAAAATGCAAATTAAAAAAACTAAAAGAAACAAGTTTTCTACAGTAACCTACAGTAATCCGGAACACCGCACTATCAATTTTCAGACAAAAAAATCGGAAAAATCGAAAAACGAATCTTCAAAAATAGCTGAAAAACCAAAAAAGGTCTAAAAATTTTGCAAAAAAATCGTAGAAAATTCCCTTCAAAAATGGAATTTTTCCGAAAAAAAACCGCTTGAAATTGCGTATTCGAGT</canonical_amplicon>
		<polymorphic_amplicon>TCATTAGATTTTTGGGTGATTTACTTCTAGAAAGTTCTGGAATCTTCTCCGAATTTCCGCAAAAACAGAGAGAAAAATCAGCGGTTTTCTAGAGAAAAATAGGGGCTTCATTTGATTTTTTGCAGAATTTTTAGACCTTTTTAGGGTTTTCAGGCATTTTTGAAGATTCTTTTTCGATTTTTCGTCTGAAAAGTCATGGATCGGTGTTCATGAGGATTACTGTAGATTACTRTAGAAAACGAATTTTACTTCTGTAGTTTTCTTTTGCAAACAAAATTACGTCAAAATGCAAATTAAAAAAACTAAAAGAAACAAGTTTTCTACAGTAACCTACAGTAATCCGGAACACCGCACTATCAATTTTCAGACAAAAAAATCGGAAAAATCGAAAAACGAATCTTCAAAAATAGCTGAAAAACCAAAAAAGGTCTAAAAATTTTGCAAAAAAATCGTAGAAAATTCCCTTCAAAAATGGAATTTTTCCGAAAAAAAACCGCTTGAAATTGCGTATTCGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23952</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1120535</contig_pos>
        <strand>+</strand>
        <context>GGCACAGCTG[A/G]AATCGAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTACGGATCACTCCTGAGATGTCCTTGTCGCCTTGGAGGGGCACAGCTG</left_flank>
        <right_flank>AATCGAAAAAGAAATAAAAAGGATTGGGAGGGAGTGGGGGTTGAACTTGC</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTTTTCTTTGTTTCAAACCTGTCTATAGTCGTCCAAATCGAATTTAAATGGATATTGACCGAAATTGGCGTACAGCTTCTCCCCGGGAGTCCTTAATCCTACTGTAGGATACAAGTTCTCCATTTCTCCAGGTTTTCCTTCATGAGCAATTCCTAGTAACTCTCCATCTTTGGTGAAAAACACGATATTCAGATTTGTATCAATCCCACATCCAATGACATCATGTTTCCCGAATCTTGGTCCATAAGACTTCCCATGACCACAAGCATTAAAAAAGTTCCCATCATCCCCATGGTATCCATAACAATGGGGATCCCATCCGGGCATTCTAGTCAGGTCCCCATTCGCTTTACTCAGCCCAACACCCATACATCCGTTCTTTCCCTCGCAATGGAGAATGGTGACCTCGAAATAGTAGGTTCCGAAGCAGGCGGGAATGCAGCAATCGCTACGGATCACTCCTGAGATGTCCTTGTCGCCTTGGAGGGGCACAGCTGGAATCGAAAAAGAAATAAAAAGGATTGGGAGGGAGTGGGGGTTGAACTTGCGGTGGCTCGCGCGGGAGCCTACAGCCCTAGCACTACACCACGCGGCGTAATTTCAATGAGGCGGCGCCATGGCATAATGAAATAGCCGGGAAATGAGAGAGAGAGAGCTAGAGAGGGAAGAGAGGGAGAGTGCCTAGTTTACGATGAGGTAGCTAAATTGAAAAGGATGTTTCTAGAAAACTAAAACTGCTAGAAAAAATCCTAATAGATATTCTGAAAGCCCAAATTCCAGGCTTTCAGGAGGTATAAAAATGTATAATTTTTCAAAGATTCGAAACTTTTTCTTATAATGTAGAGTTGAAGGAAAGCAGAATAAAATCAAGAAAAAAAAAATAAAAACTCACATTTAAAAGAGACTTGTAATCCATTTTTAGACAATTCCAGATAGGTAGATGATTGATTGATATCCCATCTTCGAGGCAAATGAACATCCTGAACTTTTTATAATTA</canonical>
            <polymorphic>CCTTTTTCTTTGTTTCAAACCTGTCTATAGTCGTCCAAATCGAATTTAAATGGATATTGACCGAAATTGGCGTACAGCTTCTCCCCGGGAGTCCTTAATCCTACTGTAGGATACAAGTTCTCCATTTCTCCAGGTTTTCCTTCATGAGCAATTCCTAGTAACTCTCCATCTTTGGTGAAAAACACGATATTCAGATTTGTATCAATCCCACATCCAATGACATCATGTTTCCCGAATCTTGGTCCATAAGACTTCCCATGACCACAAGCATTAAAAAAGTTCCCATCATCCCCATGGTATCCATAACAATGGGGATCCCATCCGGGCATTCTAGTCAGGTCCCCATTCGCTTTACTCAGCCCAACACCCATACATCCGTTCTTTCCCTCGCAATGGAGAATGGTGACCTCGAAATAGTAGGTTCCGAAGCAGGCGGGAATGCAGCAATCGCTACGGATCACTCCTGAGATGTCCTTGTCGCCTTGGAGGGGCACAGCTGRAATCGAAAAAGAAATAAAAAGGATTGGGAGGGAGTGGGGGTTGAACTTGCGGTGGCTCGCGCGGGAGCCTACAGCCCTAGCACTACACCACGCGGCGTAATTTCAATGAGGCGGCGCCATGGCATAATGAAATAGCCGGGAAATGAGAGAGAGAGAGCTAGAGAGGGAAGAGAGGGAGAGTGCCTAGTTTACGATGAGGTAGCTAAATTGAAAAGGATGTTTCTAGAAAACTAAAACTGCTAGAAAAAATCCTAATAGATATTCTGAAAGCCCAAATTCCAGGCTTTCAGGAGGTATAAAAATGTATAATTTTTCAAAGATTCGAAACTTTTTCTTATAATGTAGAGTTGAAGGAAAGCAGAATAAAATCAAGAAAAAAAAAATAAAAACTCACATTTAAAAGAGACTTGTAATCCATTTTTAGACAATTCCAGATAGGTAGATGATTGATTGATATCCCATCTTCGAGGCAAATGAACATCCTGAACTTTTTATAATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>319 266 181 145 89</canonical_bands>
                <polymorphic_bands>585 181 145 89</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>319 266 234 181</canonical_bands>
                <polymorphic_bands>585 234 181</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGGTGACCTCGAAATAGTAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTCCCGGCTATTTCATTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATGGTGACCTCGAAATAGTAGGTTCCGAAGCAGGCGGGAATGCAGCAATCGCTACGGATCACTCCTGAGATGTCCTTGTCGCCTTGGAGGGGCACAGCTGGAATCGAAAAAGAAATAAAAAGGATTGGGAGGGAGTGGGGGTTGAACTTGCGGTGGCTCGCGCGGGAGCCTACAGCCCTAGCACTACACCACGCGGCGTAATTTCAATGAGGCGGCGCCATGGCATAATGAAATAGCCGGGAAAT</canonical_amplicon>
		<polymorphic_amplicon>AATGGTGACCTCGAAATAGTAGGTTCCGAAGCAGGCGGGAATGCAGCAATCGCTACGGATCACTCCTGAGATGTCCTTGTCGCCTTGGAGGGGCACAGCTGRAATCGAAAAAGAAATAAAAAGGATTGGGAGGGAGTGGGGGTTGAACTTGCGGTGGCTCGCGCGGGAGCCTACAGCCCTAGCACTACACCACGCGGCGTAATTTCAATGAGGCGGCGCCATGGCATAATGAAATAGCCGGGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23953</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1125614</contig_pos>
        <strand>+</strand>
        <context>ATTCTTCGAT[C/T]TTCGGCTCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGTGGTGCCAAAGGTATTTTTGGCTCGAAAAATCGGCAAATTCTTCGAT</left_flank>
        <right_flank>TTCGGCTCAAAAGTTCACTAATTTTCCATCGATTTTTCCGTTTTTAGCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTTTTTTCGGTTTAGTGCATAAATGGCGTTTTCTGACTGATGTTTTAGTGGGATTTCCAAATTTTCAGGTAAATCACACAAAATGACAGCTCTCGACACTGAAGTTGACTACGGAGATGCTGACAAGTACGTGAACGACGAGTCAATCGAAATGGCTTGGGCCATCAAAGCCGGAGAGAGAGCCGAAGTTCACATGAATCTCATCACTCGATGCGATACCAGAGTCCTCCGCCTCAACAAGCATCAGGACTTGATCCTCGCGGAATTCCGAAAATCGTTCCCCGATTTGAACGTTGAGGAGGTCACAACGAGTCTTGTGAAGGACAACGGAGCCAAGGAGACGTGGCGAGAGTTCTGTGAGCAGTTCAAGGAGATTGTGGAGGATTATTCGATGGGAACGCTTATGAGGTGTCATGCTGCGAAAGCATACAGCCCGGAGAACACTGTTGTGGTGCCAAAGGTATTTTTGGCTCGAAAAATCGGCAAATTCTTCGATCTTCGGCTCAAAAGTTCACTAATTTTCCATCGATTTTTCCGTTTTTAGCTCGAGAAATCACTATTTTCCACCGGATTTTCCAATTTTTAGCTCAAAAAAGCACTGATTTTTCATTGCTTCTTTCGATTTTTGGCTCGAAAATGCACTAATTTTTCACCAAAATTACCTATTTTCGGCTCAAAACAGTAATTTTCATTGCTTTTTTCGATTTTTGGCTCGAAAAATCCCTTTTTCTCACCGATTTTTTGGATTTTTGACTTTAAGAATCACTAATTTTTTTTATCATTTTCTTCTATTTTTGACTCAAACAACCACTATTTTTAGCGGTTTTTTTCTATTTTTGGCTCTAAAAATCACTAATTTTCCAACAGATTTTCCGATTTTTCACTCAAAAAATGACTAATCTTCCAGCAGTTTATTCGATTTTGAGCTCGAAAAATCACTATTTTTCACCAAATTTTCCGATTTTTGGCCCCAAAAAATCGCCAAATTCCTATTTTT</canonical>
            <polymorphic>CATTTTTTTTCGGTTTAGTGCATAAATGGCGTTTTCTGACTGATGTTTTAGTGGGATTTCCAAATTTTCAGGTAAATCACACAAAATGACAGCTCTCGACACTGAAGTTGACTACGGAGATGCTGACAAGTACGTGAACGACGAGTCAATCGAAATGGCTTGGGCCATCAAAGCCGGAGAGAGAGCCGAAGTTCACATGAATCTCATCACTCGATGCGATACCAGAGTCCTCCGCCTCAACAAGCATCAGGACTTGATCCTCGCGGAATTCCGAAAATCGTTCCCCGATTTGAACGTTGAGGAGGTCACAACGAGTCTTGTGAAGGACAACGGAGCCAAGGAGACGTGGCGAGAGTTCTGTGAGCAGTTCAAGGAGATTGTGGAGGATTATTCGATGGGAACGCTTATGAGGTGTCATGCTGCGAAAGCATACAGCCCGGAGAACACTGTTGTGGTGCCAAAGGTATTTTTGGCTCGAAAAATCGGCAAATTCTTCGATYTTCGGCTCAAAAGTTCACTAATTTTCCATCGATTTTTCCGTTTTTAGCTCGAGAAATCACTATTTTCCACCGGATTTTCCAATTTTTAGCTCAAAAAAGCACTGATTTTTCATTGCTTCTTTCGATTTTTGGCTCGAAAATGCACTAATTTTTCACCAAAATTACCTATTTTCGGCTCAAAACAGTAATTTTCATTGCTTTTTTCGATTTTTGGCTCGAAAAATCCCTTTTTCTCACCGATTTTTTGGATTTTTGACTTTAAGAATCACTAATTTTTTTTATCATTTTCTTCTATTTTTGACTCAAACAACCACTATTTTTAGCGGTTTTTTTCTATTTTTGGCTCTAAAAATCACTAATTTTCCAACAGATTTTCCGATTTTTCACTCAAAAAATGACTAATCTTCCAGCAGTTTATTCGATTTTGAGCTCGAAAAATCACTATTTTTCACCAAATTTTCCGATTTTTGGCCCCAAAAAATCGCCAAATTCCTATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>504 255 241</canonical_bands>
                <polymorphic_bands>745 255</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGAGATTGTGGAGGATTATT</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAGCAATGAAAAATCAGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAGGAGATTGTGGAGGATTATTCGATGGGAACGCTTATGAGGTGTCATGCTGCGAAAGCATACAGCCCGGAGAACACTGTTGTGGTGCCAAAGGTATTTTTGGCTCGAAAAATCGGCAAATTCTTCGATCTTCGGCTCAAAAGTTCACTAATTTTCCATCGATTTTTCCGTTTTTAGCTCGAGAAATCACTATTTTCCACCGGATTTTCCAATTTTTAGCTCAAAAAAGCACTGATTTTTCATTGCTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>AAGGAGATTGTGGAGGATTATTCGATGGGAACGCTTATGAGGTGTCATGCTGCGAAAGCATACAGCCCGGAGAACACTGTTGTGGTGCCAAAGGTATTTTTGGCTCGAAAAATCGGCAAATTCTTCGATYTTCGGCTCAAAAGTTCACTAATTTTCCATCGATTTTTCCGTTTTTAGCTCGAGAAATCACTATTTTCCACCGGATTTTCCAATTTTTAGCTCAAAAAAGCACTGATTTTTCATTGCTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23954</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1156739</contig_pos>
        <strand></strand>
        <context>tcaaagttga[T/C]ggtTTCAGCG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAATTTTCGATATCTTTAAGAGGAACCCAGATAATTGAGCTCAAAGTTGA</left_flank>
        <right_flank>GGTTTCAGCGGCATCGTCAAAAATTGATTTTTAAAAAGACATCGTTTTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAATCAATATATGGATTTTTGATCTACACCTAATCGTTTTTTTTCTTTAGTATTTTTTCTGATCTCCAAAACAAGCGGTTGGTTTTGTCTTTTTTGAAGAGTACTCAAATGAGGGTAGAACGGCACCCGAATCGTCAAATTAGAGCCCATGTATTTCATTTTCTGTGAGAGATATCAAAAAGTGGCCAACTAACAAAATGTTGCTGATTTCATGATAAACATTTTATTAGTTTACAACTTTTTGATATCTTTTCCAGGAATCGAGATATATGAGCTCAAAGAATAGAGGTGGCGCTGTCGACCGCTCTCGACCAGCTCATAGTCAGGCGGCAAGCGCAGGCTTCTAAACTTTGAACCTATATAACTCGGTTCCTGTGGAAGATATTAAAAAGTGGCAAACTAACGAAGTTTTTATCAGAATATCACCAACATTTTATCAGCTGGCTAATTTTCGATATCTTTAAGAGGAACCCAGATAATTGAGCTCAAAGTTGATGGTTTCAGCGGCATCGTCAAAAATTGATTTTTAAAAAGACATCGTTTTTTTCTTATGAATTTCAAATCACATGAAAAAAGTCGTTACCTGAATAGCTGACAAGCTTAGCGTTATCTCCATTCTTGTTGCAAATAGTGTCGGCTCGAAAACTGGAAAAAAATAGGAAAATTATCTAAAATTGTGAGGAAAAGAGTTACCTCATTCATCCTGGAGTGATTCTAGACGTCCCGATTTTTAGTGTTCCGAAGGATGCTGTCAGCTGGAAAACAAAAATTAATTAGTTAATAAAAAACCTAAACTCTGAATGGAACACAGGAAAAGGAATAAATATCATCATCATTCTTAAAATCAAGAAATAGAGAGGTGTCTCTTTTATTCTTTGTATGTCATTGATTTTTCCCAGGGGACAAATCTGCCTGACCTAATTTTTGGGTCTGGCAGGTTCTGAATCCCAATTCAAAAACGTTTTTTTTCTAGATTTTAGATATCAAAATTAGTTT</canonical>
            <polymorphic>AAAAAAATCAATATATGGATTTTTGATCTACACCTAATCGTTTTTTTTCTTTAGTATTTTTTCTGATCTCCAAAACAAGCGGTTGGTTTTGTCTTTTTTGAAGAGTACTCAAATGAGGGTAGAACGGCACCCGAATCGTCAAATTAGAGCCCATGTATTTCATTTTCTGTGAGAGATATCAAAAAGTGGCCAACTAACAAAATGTTGCTGATTTCATGATAAACATTTTATTAGTTTACAACTTTTTGATATCTTTTCCAGGAATCGAGATATATGAGCTCAAAGAATAGAGGTGGCGCTGTCGACCGCTCTCGACCAGCTCATAGTCAGGCGGCAAGCGCAGGCTTCTAAACTTTGAACCTATATAACTCGGTTCCTGTGGAAGATATTAAAAAGTGGCAAACTAACGAAGTTTTTATCAGAATATCACCAACATTTTATCAGCTGGCTAATTTTCGATATCTTTAAGAGGAACCCAGATAATTGAGCTCAAAGTTGAYGGTTTCAGCGGCATCGTCAAAAATTGATTTTTAAAAAGACATCGTTTTTTTCTTATGAATTTCAAATCACATGAAAAAAGTCGTTACCTGAATAGCTGACAAGCTTAGCGTTATCTCCATTCTTGTTGCAAATAGTGTCGGCTCGAAAACTGGAAAAAAATAGGAAAATTATCTAAAATTGTGAGGAAAAGAGTTACCTCATTCATCCTGGAGTGATTCTAGACGTCCCGATTTTTAGTGTTCCGAAGGATGCTGTCAGCTGGAAAACAAAAATTAATTAGTTAATAAAAAACCTAAACTCTGAATGGAACACAGGAAAAGGAATAAATATCATCATCATTCTTAAAATCAAGAAATAGAGAGGTGTCTCTTTTATTCTTTGTATGTCATTGATTTTTCCCAGGGGACAAATCTGCCTGACCTAATTTTTGGGTCTGGCAGGTTCTGAATCCCAATTCAAAAACGTTTTTTTTCTAGATTTTAGATATCAAAATTAGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTGATCTCCAAAACAAG</pcr_primer_p1>
		<pcr_primer_p2>CAGCTATTCAGGTAACGACTTT</pcr_primer_p2>
		<pcr_amplicon_size>541</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTGATCTCCAAAACAAGCGGTTGGTTTTGTCTTTTTTGAAGAGTACTCAAATGAGGGTAGAACGGCACCCGAATCGTCAAATTAGAGCCCATGTATTTCATTTTCTGTGAGAGATATCAAAAAGTGGCCAACTAACAAAATGTTGCTGATTTCATGATAAACATTTTATTAGTTTACAACTTTTTGATATCTTTTCCAGGAATCGAGATATATGAGCTCAAAGAATAGAGGTGGCGCTGTCGACCGCTCTCGACCAGCTCATAGTCAGGCGGCAAGCGCAGGCTTCTAAACTTTGAACCTATATAACTCGGTTCCTGTGGAAGATATTAAAAAGTGGCAAACTAACGAAGTTTTTATCAGAATATCACCAACATTTTATCAGCTGGCTAATTTTCGATATCTTTAAGAGGAACCCAGATAATTGAGCTCAAAGTTGATGGTTTCAGCGGCATCGTCAAAAATTGATTTTTAAAAAGACATCGTTTTTTTCTTATGAATTTCAAATCACATGAAAAAAGTCGTTACCTGAATAGCTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTGATCTCCAAAACAAGCGGTTGGTTTTGTCTTTTTTGAAGAGTACTCAAATGAGGGTAGAACGGCACCCGAATCGTCAAATTAGAGCCCATGTATTTCATTTTCTGTGAGAGATATCAAAAAGTGGCCAACTAACAAAATGTTGCTGATTTCATGATAAACATTTTATTAGTTTACAACTTTTTGATATCTTTTCCAGGAATCGAGATATATGAGCTCAAAGAATAGAGGTGGCGCTGTCGACCGCTCTCGACCAGCTCATAGTCAGGCGGCAAGCGCAGGCTTCTAAACTTTGAACCTATATAACTCGGTTCCTGTGGAAGATATTAAAAAGTGGCAAACTAACGAAGTTTTTATCAGAATATCACCAACATTTTATCAGCTGGCTAATTTTCGATATCTTTAAGAGGAACCCAGATAATTGAGCTCAAAGTTGAYGGTTTCAGCGGCATCGTCAAAAATTGATTTTTAAAAAGACATCGTTTTTTTCTTATGAATTTCAAATCACATGAAAAAAGTCGTTACCTGAATAGCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23955</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1158273</contig_pos>
        <strand></strand>
        <context>taatcaaaaa[G/A]tartcaactg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAACCCCCCTCCCCACCTAGTTTTTTACCTCGATTCCTGTTAATCAAAAA</left_flank>
        <right_flank>TAATCAACTGATAAAATGTTTTTGATAGTATGATAAGCATTTTGTCAGTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTACGGTAGTTGCAAGCGAACCGACTGATAACATTTCAATAGTACGAGATATTCAGACAGTGCCAATTGATAGATCTTGACAGGGCCCATCATGCCTATATCATTCAGGCCTGATTTCATTCCGGTAACATACCGCAACCCGGATTCTGTCTCTAATGATCTTTCTTTTCTTAGAATCCCAAATTTTCCAGATTTTTCAGACTCTCATCTTTTTTAGCCCAGTTTATCTCGGTTCCTGTAACAGATATCAAAAAAGTGATTAACTGACGAAATGCTTTTGACATTATGATGAACATTTTGTCAATTGACCACTGGGAATATTTTTGCGTTGAGCGATTTCGAATTGAAATTTAGACATTTACATAGAACCAAAATTTACATAGAACCAAATATAGAAACAAAAAGAAAATTCTGAATTTCAGGGGTCTGAAAATAGGTGTTATTGCAGAACCCCCCTCCCCACCTAGTTTTTTACCTCGATTCCTGTTAATCAAAAAGTAATCAACTGATAAAATGTTTTTGATAGTATGATAAGCATTTTGTCAGTTTATCACGATTTGATACCTTTTACAGGAAATGAGATATACGAGCTCAAAGTTGACGGCCCGGGTGGCGTTCTATTAGATTGTTTACTATATTTTTTTGAAATTTTTTTCATAGTTCATTTTTTTATCAGTTGACAATTTTTCGATATCATGTTTAGGAACTTAGATTTTTCAACGGTACAGTAACCATCTGATAGGCTGTTACGGTACCTCCAAAACCTTTTGTTCCTAATTATCTAGTTTTCTATAATTAATATAAAAAAATGAAACATAGTAAAACAAGGTAAACAATATAAAGGTTTTCATTAGTTAATCACACTTTTGTAACATAATTGCAAACCTAGATAATTAGGAGCTGAGAGTTAGAAGATGTACCAATTTGACCGTAATTATCTCAGCTTCTAGAAAAGGTTCAAAAAAATAACCAACCATTAAAATGTTTTAAATTCGATT</canonical>
            <polymorphic>GTTTACGGTAGTTGCAAGCGAACCGACTGATAACATTTCAATAGTACGAGATATTCAGACAGTGCCAATTGATAGATCTTGACAGGGCCCATCATGCCTATATCATTCAGGCCTGATTTCATTCCGGTAACATACCGCAACCCGGATTCTGTCTCTAATGATCTTTCTTTTCTTAGAATCCCAAATTTTCCAGATTTTTCAGACTCTCATCTTTTTTAGCCCAGTTTATCTCGGTTCCTGTAACAGATATCAAAAAAGTGATTAACTGACGAAATGCTTTTGACATTATGATGAACATTTTGTCAATTGACCACTGGGAATATTTTTGCGTTGAGCGATTTCGAATTGAAATTTAGACATTTACATAGAACCAAAATTTACATAGAACCAAATATAGAAACAAAAAGAAAATTCTGAATTTCAGGGGTCTGAAAATAGGTGTTATTGCAGAACCCCCCTCCCCACCTAGTTTTTTACCTCGATTCCTGTTAATCAAAAARTAATCAACTGATAAAATGTTTTTGATAGTATGATAAGCATTTTGTCAGTTTATCACGATTTGATACCTTTTACAGGAAATGAGATATACGAGCTCAAAGTTGACGGCCCGGGTGGCGTTCTATTAGATTGTTTACTATATTTTTTTGAAATTTTTTTCATAGTTCATTTTTTTATCAGTTGACAATTTTTCGATATCATGTTTAGGAACTTAGATTTTTCAACGGTACAGTAACCATCTGATAGGCTGTTACGGTACCTCCAAAACCTTTTGTTCCTAATTATCTAGTTTTCTATAATTAATATAAAAAAATGAAACATAGTAAAACAAGGTAAACAATATAAAGGTTTTCATTAGTTAATCACACTTTTGTAACATAATTGCAAACCTAGATAATTAGGAGCTGAGAGTTAGAAGATGTACCAATTTGACCGTAATTATCTCAGCTTCTAGAAAAGGTTCAAAAAAATAACCAACCATTAAAATGTTTTAAATTCGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATAGGTGTTATTGCAGAACC</pcr_primer_p1>
		<pcr_primer_p2>ATGGTTACTGTACCGTTGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>305</pcr_amplicon_size>
		<canonical_amplicon>AAATAGGTGTTATTGCAGAACCCCCCTCCCCACCTAGTTTTTTACCTCGATTCCTGTTAATCAAAAAGTAATCAACTGATAAAATGTTTTTGATAGTATGATAAGCATTTTGTCAGTTTATCACGATTTGATACCTTTTACAGGAAATGAGATATACGAGCTCAAAGTTGACGGCCCGGGTGGCGTTCTATTAGATTGTTTACTATATTTTTTTGAAATTTTTTTCATAGTTCATTTTTTTATCAGTTGACAATTTTTCGATATCATGTTTAGGAACTTAGATTTTTCAACGGTACAGTAACCAT</canonical_amplicon>
		<polymorphic_amplicon>AAATAGGTGTTATTGCAGAACCCCCCTCCCCACCTAGTTTTTTACCTCGATTCCTGTTAATCAAAAARTAATCAACTGATAAAATGTTTTTGATAGTATGATAAGCATTTTGTCAGTTTATCACGATTTGATACCTTTTACAGGAAATGAGATATACGAGCTCAAAGTTGACGGCCCGGGTGGCGTTCTATTAGATTGTTTACTATATTTTTTTGAAATTTTTTTCATAGTTCATTTTTTTATCAGTTGACAATTTTTCGATATCATGTTTAGGAACTTAGATTTTTCAACGGTACAGTAACCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23956</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1158276</contig_pos>
        <strand></strand>
        <context>tcaaaaarta[A/G]tcaactgata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCCCCTCCCCACCTAGTTTTTTACCTCGATTCCTGTTAATCAAAAAGTA</left_flank>
        <right_flank>TCAACTGATAAAATGTTTTTGATAGTATGATAAGCATTTTGTCAGTTTAT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACGGTAGTTGCAAGCGAACCGACTGATAACATTTCAATAGTACGAGATATTCAGACAGTGCCAATTGATAGATCTTGACAGGGCCCATCATGCCTATATCATTCAGGCCTGATTTCATTCCGGTAACATACCGCAACCCGGATTCTGTCTCTAATGATCTTTCTTTTCTTAGAATCCCAAATTTTCCAGATTTTTCAGACTCTCATCTTTTTTAGCCCAGTTTATCTCGGTTCCTGTAACAGATATCAAAAAAGTGATTAACTGACGAAATGCTTTTGACATTATGATGAACATTTTGTCAATTGACCACTGGGAATATTTTTGCGTTGAGCGATTTCGAATTGAAATTTAGACATTTACATAGAACCAAAATTTACATAGAACCAAATATAGAAACAAAAAGAAAATTCTGAATTTCAGGGGTCTGAAAATAGGTGTTATTGCAGAACCCCCCTCCCCACCTAGTTTTTTACCTCGATTCCTGTTAATCAAAAAGTAATCAACTGATAAAATGTTTTTGATAGTATGATAAGCATTTTGTCAGTTTATCACGATTTGATACCTTTTACAGGAAATGAGATATACGAGCTCAAAGTTGACGGCCCGGGTGGCGTTCTATTAGATTGTTTACTATATTTTTTTGAAATTTTTTTCATAGTTCATTTTTTTATCAGTTGACAATTTTTCGATATCATGTTTAGGAACTTAGATTTTTCAACGGTACAGTAACCATCTGATAGGCTGTTACGGTACCTCCAAAACCTTTTGTTCCTAATTATCTAGTTTTCTATAATTAATATAAAAAAATGAAACATAGTAAAACAAGGTAAACAATATAAAGGTTTTCATTAGTTAATCACACTTTTGTAACATAATTGCAAACCTAGATAATTAGGAGCTGAGAGTTAGAAGATGTACCAATTTGACCGTAATTATCTCAGCTTCTAGAAAAGGTTCAAAAAAATAACCAACCATTAAAATGTTTTAAATTCGATTTTA</canonical>
            <polymorphic>TACGGTAGTTGCAAGCGAACCGACTGATAACATTTCAATAGTACGAGATATTCAGACAGTGCCAATTGATAGATCTTGACAGGGCCCATCATGCCTATATCATTCAGGCCTGATTTCATTCCGGTAACATACCGCAACCCGGATTCTGTCTCTAATGATCTTTCTTTTCTTAGAATCCCAAATTTTCCAGATTTTTCAGACTCTCATCTTTTTTAGCCCAGTTTATCTCGGTTCCTGTAACAGATATCAAAAAAGTGATTAACTGACGAAATGCTTTTGACATTATGATGAACATTTTGTCAATTGACCACTGGGAATATTTTTGCGTTGAGCGATTTCGAATTGAAATTTAGACATTTACATAGAACCAAAATTTACATAGAACCAAATATAGAAACAAAAAGAAAATTCTGAATTTCAGGGGTCTGAAAATAGGTGTTATTGCAGAACCCCCCTCCCCACCTAGTTTTTTACCTCGATTCCTGTTAATCAAAAAGTARTCAACTGATAAAATGTTTTTGATAGTATGATAAGCATTTTGTCAGTTTATCACGATTTGATACCTTTTACAGGAAATGAGATATACGAGCTCAAAGTTGACGGCCCGGGTGGCGTTCTATTAGATTGTTTACTATATTTTTTTGAAATTTTTTTCATAGTTCATTTTTTTATCAGTTGACAATTTTTCGATATCATGTTTAGGAACTTAGATTTTTCAACGGTACAGTAACCATCTGATAGGCTGTTACGGTACCTCCAAAACCTTTTGTTCCTAATTATCTAGTTTTCTATAATTAATATAAAAAAATGAAACATAGTAAAACAAGGTAAACAATATAAAGGTTTTCATTAGTTAATCACACTTTTGTAACATAATTGCAAACCTAGATAATTAGGAGCTGAGAGTTAGAAGATGTACCAATTTGACCGTAATTATCTCAGCTTCTAGAAAAGGTTCAAAAAAATAACCAACCATTAAAATGTTTTAAATTCGATTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATAGGTGTTATTGCAGAACC</pcr_primer_p1>
		<pcr_primer_p2>ATGGTTACTGTACCGTTGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>305</pcr_amplicon_size>
		<canonical_amplicon>AAATAGGTGTTATTGCAGAACCCCCCTCCCCACCTAGTTTTTTACCTCGATTCCTGTTAATCAAAAAGTAATCAACTGATAAAATGTTTTTGATAGTATGATAAGCATTTTGTCAGTTTATCACGATTTGATACCTTTTACAGGAAATGAGATATACGAGCTCAAAGTTGACGGCCCGGGTGGCGTTCTATTAGATTGTTTACTATATTTTTTTGAAATTTTTTTCATAGTTCATTTTTTTATCAGTTGACAATTTTTCGATATCATGTTTAGGAACTTAGATTTTTCAACGGTACAGTAACCAT</canonical_amplicon>
		<polymorphic_amplicon>AAATAGGTGTTATTGCAGAACCCCCCTCCCCACCTAGTTTTTTACCTCGATTCCTGTTAATCAAAAAGTARTCAACTGATAAAATGTTTTTGATAGTATGATAAGCATTTTGTCAGTTTATCACGATTTGATACCTTTTACAGGAAATGAGATATACGAGCTCAAAGTTGACGGCCCGGGTGGCGTTCTATTAGATTGTTTACTATATTTTTTTGAAATTTTTTTCATAGTTCATTTTTTTATCAGTTGACAATTTTTCGATATCATGTTTAGGAACTTAGATTTTTCAACGGTACAGTAACCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23957</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1169471</contig_pos>
        <strand>+</strand>
        <context>GGATTACACA[A/T]TTGTTTGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGATAATGGGATAACTTTCACTTTTTTGGGGTCATTCGGGGGATTACACA</left_flank>
        <right_flank>TTGTTTGTTTTGGTTTTTTTGAAGATTGACACTAATTATCTGGATTCTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCCTTTCTTCAAAATGACTCATCAACCTCGGGACCCATTCAGCTTCATCTCTCAACTTTTCCACTTTTTTATACATTTTCTCTGCGTCTCTCGATTCTCTATGCTCTCTCTCTTCTCTTATCACTCCCTCTCCCTATCAATTATCACCTCTCCTTCTCCTAATCACACCAATCTCACGATATCCTCGATTTCTCATGATGTGTGCGTGTGTTTCTCTCTGCGTCTCTCTAAACTCTCCACTCTCTAATCTTTCTAGCTCCGCCCATTGACATTGGGGAACAGCAGAGAGATTCATTCGGAAACCACTATCCAGAAGGAATAGATCCTCGATTCTTTTCTCTGCGTCTCTAGTCTCTATACCATATACGGATATCTCTTATTTTCCTTTCTTTTTTCCCATACAATTCAAAAGTTGTTTAAGCATTTGGGTCGGGATAAGGGGGGCCCGAGATAATGGGATAACTTTCACTTTTTTGGGGTCATTCGGGGGATTACACATTTGTTTGTTTTGGTTTTTTTGAAGATTGACACTAATTATCTGGATTCTTACCTAGTAAAATGTTAAAATCAAATTTTTAATACCTTTTACAGGAGCCAAGATAGTTAGAACCAAAACAGGTGGTATTTTACCTTGTTTAATTTAAAACTAATTATCTTAATTCCTAGAAAAGATATTGAAAAATTGTCCATTAGTAAAATGTTTAAAATTAAATTTTACACATTTTATCAGCCAACAAATTTCTGATATCTTTAACAGGAGCCAAGAAAATCAAAGTCAAAGCAGGCGGAATCTTTTTCGACCCCATTTTTACCTTGTTTAGTTTGACATTAATTATCTCAATTTCTATTTAAGATATCAAAAAATTGTCTACTGATAAAATGTTTAAAATTAAATTTTACACATTTTATCATTTATCGAATTTCAGAAATCATTTACAGGATCCAAGATATTTGGGGTGCAATGCAATCATCCTTGTCACCAACGTTTTTTTTGAACCT</canonical>
            <polymorphic>TCCCTTTCTTCAAAATGACTCATCAACCTCGGGACCCATTCAGCTTCATCTCTCAACTTTTCCACTTTTTTATACATTTTCTCTGCGTCTCTCGATTCTCTATGCTCTCTCTCTTCTCTTATCACTCCCTCTCCCTATCAATTATCACCTCTCCTTCTCCTAATCACACCAATCTCACGATATCCTCGATTTCTCATGATGTGTGCGTGTGTTTCTCTCTGCGTCTCTCTAAACTCTCCACTCTCTAATCTTTCTAGCTCCGCCCATTGACATTGGGGAACAGCAGAGAGATTCATTCGGAAACCACTATCCAGAAGGAATAGATCCTCGATTCTTTTCTCTGCGTCTCTAGTCTCTATACCATATACGGATATCTCTTATTTTCCTTTCTTTTTTCCCATACAATTCAAAAGTTGTTTAAGCATTTGGGTCGGGATAAGGGGGGCCCGAGATAATGGGATAACTTTCACTTTTTTGGGGTCATTCGGGGGATTACACAWTTGTTTGTTTTGGTTTTTTTGAAGATTGACACTAATTATCTGGATTCTTACCTAGTAAAATGTTAAAATCAAATTTTTAATACCTTTTACAGGAGCCAAGATAGTTAGAACCAAAACAGGTGGTATTTTACCTTGTTTAATTTAAAACTAATTATCTTAATTCCTAGAAAAGATATTGAAAAATTGTCCATTAGTAAAATGTTTAAAATTAAATTTTACACATTTTATCAGCCAACAAATTTCTGATATCTTTAACAGGAGCCAAGAAAATCAAAGTCAAAGCAGGCGGAATCTTTTTCGACCCCATTTTTACCTTGTTTAGTTTGACATTAATTATCTCAATTTCTATTTAAGATATCAAAAAATTGTCTACTGATAAAATGTTTAAAATTAAATTTTACACATTTTATCATTTATCGAATTTCAGAAATCATTTACAGGATCCAAGATATTTGGGGTGCAATGCAATCATCCTTGTCACCAACGTTTTTTTTGAACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGATATCTCTTATTTTCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTCTAACTATCTTGGCTCCTGTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CGGATATCTCTTATTTTCCTTTCTTTTTTCCCATACAATTCAAAAGTTGTTTAAGCATTTGGGTCGGGATAAGGGGGGCCCGAGATAATGGGATAACTTTCACTTTTTTGGGGTCATTCGGGGGATTACACATTTGTTTGTTTTGGTTTTTTTGAAGATTGACACTAATTATCTGGATTCTTACCTAGTAAAATGTTAAAATCAAATTTTTAATACCTTTTACAGGAGCCAAGATAGTTAGAA</canonical_amplicon>
		<polymorphic_amplicon>CGGATATCTCTTATTTTCCTTTCTTTTTTCCCATACAATTCAAAAGTTGTTTAAGCATTTGGGTCGGGATAAGGGGGGCCCGAGATAATGGGATAACTTTCACTTTTTTGGGGTCATTCGGGGGATTACACAWTTGTTTGTTTTGGTTTTTTTGAAGATTGACACTAATTATCTGGATTCTTACCTAGTAAAATGTTAAAATCAAATTTTTAATACCTTTTACAGGAGCCAAGATAGTTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23958</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1169962</contig_pos>
        <strand>+</strand>
        <context>CCAACGTTTT[A/T]tttgaaccta</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATCCAAGATATTTGGGGTGCAATGCAATCATCCTTGTCACCAACGTTTT</left_flank>
        <right_flank>TTTGAACCTAGTTATCTCGGTTCCCAAAAAAGATATCGACTAATTGTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTACACATTTGTTTGTTTTGGTTTTTTTGAAGATTGACACTAATTATCTGGATTCTTACCTAGTAAAATGTTAAAATCAAATTTTTAATACCTTTTACAGGAGCCAAGATAGTTAGAACCAAAACAGGTGGTATTTTACCTTGTTTAATTTAAAACTAATTATCTTAATTCCTAGAAAAGATATTGAAAAATTGTCCATTAGTAAAATGTTTAAAATTAAATTTTACACATTTTATCAGCCAACAAATTTCTGATATCTTTAACAGGAGCCAAGAAAATCAAAGTCAAAGCAGGCGGAATCTTTTTCGACCCCATTTTTACCTTGTTTAGTTTGACATTAATTATCTCAATTTCTATTTAAGATATCAAAAAATTGTCTACTGATAAAATGTTTAAAATTAAATTTTACACATTTTATCATTTATCGAATTTCAGAAATCATTTACAGGATCCAAGATATTTGGGGTGCAATGCAATCATCCTTGTCACCAACGTTTTTTTTGAACCTAGTTATCTCGGTTCCCAAAAAAGATATCGACTAATTGTTAACTGATAAAATGTTTAAAATTGAATTATACACATTTTGATAGTAGTTTCTTCTCTAAATCTTTATTACGGACCTAGATAATTAGAGTTTAAGATACCAAGATTTTGCACATTTTTATTTCAAGAGAGCCCTGTTTGGATAGCCATTTCAATCCTTATTATCTTAGTTCCTAGAGAAGATATCAAACATTTGTCAACTAGTGAAATGTTTTTCAGATTCTGTTTAACATTTTATTAATTGCAACCATTTTTGCATCTTCATCAAGATTCGATATAATTAGGGTCAAAGTCAACACCATCCAGTGCTTCAAAACGACGCTTTAACTTTATTATCTCTGTTCTTAGCATAGTAACTAAAAAGTAGTCAACTAATAAAATGTTTAAAATTTGATTTTACACATTTTTGTAGTTTACAGCCTTTCGATATCATTTACAGGAAGCAAGATAAACCGT</canonical>
            <polymorphic>ATTACACATTTGTTTGTTTTGGTTTTTTTGAAGATTGACACTAATTATCTGGATTCTTACCTAGTAAAATGTTAAAATCAAATTTTTAATACCTTTTACAGGAGCCAAGATAGTTAGAACCAAAACAGGTGGTATTTTACCTTGTTTAATTTAAAACTAATTATCTTAATTCCTAGAAAAGATATTGAAAAATTGTCCATTAGTAAAATGTTTAAAATTAAATTTTACACATTTTATCAGCCAACAAATTTCTGATATCTTTAACAGGAGCCAAGAAAATCAAAGTCAAAGCAGGCGGAATCTTTTTCGACCCCATTTTTACCTTGTTTAGTTTGACATTAATTATCTCAATTTCTATTTAAGATATCAAAAAATTGTCTACTGATAAAATGTTTAAAATTAAATTTTACACATTTTATCATTTATCGAATTTCAGAAATCATTTACAGGATCCAAGATATTTGGGGTGCAATGCAATCATCCTTGTCACCAACGTTTTWTTTGAACCTAGTTATCTCGGTTCCCAAAAAAGATATCGACTAATTGTTAACTGATAAAATGTTTAAAATTGAATTATACACATTTTGATAGTAGTTTCTTCTCTAAATCTTTATTACGGACCTAGATAATTAGAGTTTAAGATACCAAGATTTTGCACATTTTTATTTCAAGAGAGCCCTGTTTGGATAGCCATTTCAATCCTTATTATCTTAGTTCCTAGAGAAGATATCAAACATTTGTCAACTAGTGAAATGTTTTTCAGATTCTGTTTAACATTTTATTAATTGCAACCATTTTTGCATCTTCATCAAGATTCGATATAATTAGGGTCAAAGTCAACACCATCCAGTGCTTCAAAACGACGCTTTAACTTTATTATCTCTGTTCTTAGCATAGTAACTAAAAAGTAGTCAACTAATAAAATGTTTAAAATTTGATTTTACACATTTTTGTAGTTTACAGCCTTTCGATATCATTTACAGGAAGCAAGATAAACCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCCATTTTTACCTTGTTTAG</pcr_primer_p1>
		<pcr_primer_p2>GTGCAAAATCTTGGTATCTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>348</pcr_amplicon_size>
		<canonical_amplicon>CCCCATTTTTACCTTGTTTAGTTTGACATTAATTATCTCAATTTCTATTTAAGATATCAAAAAATTGTCTACTGATAAAATGTTTAAAATTAAATTTTACACATTTTATCATTTATCGAATTTCAGAAATCATTTACAGGATCCAAGATATTTGGGGTGCAATGCAATCATCCTTGTCACCAACGTTTTTTTTGAACCTAGTTATCTCGGTTCCCAAAAAAGATATCGACTAATTGTTAACTGATAAAATGTTTAAAATTGAATTATACACATTTTGATAGTAGTTTCTTCTCTAAATCTTTATTACGGACCTAGATAATTAGAGTTTAAGATACCAAGATTTTGCAC</canonical_amplicon>
		<polymorphic_amplicon>CCCCATTTTTACCTTGTTTAGTTTGACATTAATTATCTCAATTTCTATTTAAGATATCAAAAAATTGTCTACTGATAAAATGTTTAAAATTAAATTTTACACATTTTATCATTTATCGAATTTCAGAAATCATTTACAGGATCCAAGATATTTGGGGTGCAATGCAATCATCCTTGTCACCAACGTTTTWTTTGAACCTAGTTATCTCGGTTCCCAAAAAAGATATCGACTAATTGTTAACTGATAAAATGTTTAAAATTGAATTATACACATTTTGATAGTAGTTTCTTCTCTAAATCTTTATTACGGACCTAGATAATTAGAGTTTAAGATACCAAGATTTTGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23959</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1172044</contig_pos>
        <strand>+</strand>
        <context>ACTCTAATCG[C/T]TTTTTCTGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACTCTAATCG</left_flank>
        <right_flank>TTTTTCTGCTATTACGTCCCTTCACATCCCTAAAACGGTCAAGGTTTTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGTAAATTGGCGAGCTCTAACTCAGCTCATTGTGAGCCAATTTGGCTCAAATTTGCACAGATTTGTTAAGGATTCGAAAATTCGTCATTCCAGGTAACCGTTACCCTGAAATACGACCAAGACTCCGGGATACGACCTTCTCAAAAAAGAATTTTCAATGAAAATTCAAATGACATCATCATCAATACTTTCCCTCCATTTTCTCCCACACCCAATCGTTTCGCAACAAAATTCTCCTCAAATTTTCCGCCCCGCGTGCAGCAAATCTGTGGTTTTTGGGGAAAGTAAAAAAGCCGTCAGCAGGCACAGGCAAAGTGATTTGTCAAAAAGTTTAGTCGTCGTGTGTGGGTGGTGGTGTAATTGTTGTGTCTTCTCCTTTTTTTCACTGTCCCTTATACGTACCGTCCATTCTTCCCATTCTTCCCATTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACTCTAATCGTTTTTTCTGCTATTACGTCCCTTCACATCCCTAAAACGGTCAAGGTTTTATTGCCCGATCCCTTCCCTTTTTTCCTGGCCATCATCTTTTTACAAAGAATTCTGTTTGTCTGTTTGTCCGGATTACCAGAAATTTTTCTTTAATTGCGAGAACCTCATTCTTTTTGTCCCAATCTCTCCCACCGTTAAGAAATTGTTTTTTTGAAAACTTGATCTTTGAGCTCAATTATCTCAATTCCTATAAAAGATAGCAAAAAAGAAGTTAACGAATAAAATGTTTATCATTAAATCAGCTACATTTTATCAGCTGACAGATTTTTGATATCTCTCATAGGAAGCGAGATAATTAAGATCAAAGAAGCATGTGTAAGATCAATCAGAGCTAGCCCACCCTATGAGCGCACTTTGAGCATAACTATCTCAACTTCTGTAGGAGATATCAAAAATCTGCAAACTACAAAATGTTGCTGATTTTATGAAAAATATTATATCAGTTCACAAA</canonical>
            <polymorphic>ACAGTAAATTGGCGAGCTCTAACTCAGCTCATTGTGAGCCAATTTGGCTCAAATTTGCACAGATTTGTTAAGGATTCGAAAATTCGTCATTCCAGGTAACCGTTACCCTGAAATACGACCAAGACTCCGGGATACGACCTTCTCAAAAAAGAATTTTCAATGAAAATTCAAATGACATCATCATCAATACTTTCCCTCCATTTTCTCCCACACCCAATCGTTTCGCAACAAAATTCTCCTCAAATTTTCCGCCCCGCGTGCAGCAAATCTGTGGTTTTTGGGGAAAGTAAAAAAGCCGTCAGCAGGCACAGGCAAAGTGATTTGTCAAAAAGTTTAGTCGTCGTGTGTGGGTGGTGGTGTAATTGTTGTGTCTTCTCCTTTTTTTCACTGTCCCTTATACGTACCGTCCATTCTTCCCATTCTTCCCATTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACTCTAATCGYTTTTTCTGCTATTACGTCCCTTCACATCCCTAAAACGGTCAAGGTTTTATTGCCCGATCCCTTCCCTTTTTTCCTGGCCATCATCTTTTTACAAAGAATTCTGTTTGTCTGTTTGTCCGGATTACCAGAAATTTTTCTTTAATTGCGAGAACCTCATTCTTTTTGTCCCAATCTCTCCCACCGTTAAGAAATTGTTTTTTTGAAAACTTGATCTTTGAGCTCAATTATCTCAATTCCTATAAAAGATAGCAAAAAAGAAGTTAACGAATAAAATGTTTATCATTAAATCAGCTACATTTTATCAGCTGACAGATTTTTGATATCTCTCATAGGAAGCGAGATAATTAAGATCAAAGAAGCATGTGTAAGATCAATCAGAGCTAGCCCACCCTATGAGCGCACTTTGAGCATAACTATCTCAACTTCTGTAGGAGATATCAAAAATCTGCAAACTACAAAATGTTGCTGATTTTATGAAAAATATTATATCAGTTCACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCCATTCTTCCCATTCTTC</pcr_primer_p1>
		<pcr_primer_p2>AGGTTCTCGCAATTAAAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCCATTCTTCCCATTCTTCCCATTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACTCTAATCGTTTTTTCTGCTATTACGTCCCTTCACATCCCTAAAACGGTCAAGGTTTTATTGCCCGATCCCTTCCCTTTTTTCCTGGCCATCATCTTTTTACAAAGAATTCTGTTTGTCTGTTTGTCCGGATTACCAGAAATTTTTCTTTAATTGCGAGAACCT</canonical_amplicon>
		<polymorphic_amplicon>GTCCATTCTTCCCATTCTTCCCATTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACTCTAATCGYTTTTTCTGCTATTACGTCCCTTCACATCCCTAAAACGGTCAAGGTTTTATTGCCCGATCCCTTCCCTTTTTTCCTGGCCATCATCTTTTTACAAAGAATTCTGTTTGTCTGTTTGTCCGGATTACCAGAAATTTTTCTTTAATTGCGAGAACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23960</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1172131</contig_pos>
        <strand>+</strand>
        <context>GCCATCATCT[C/T]TTTACAAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTCAAGGTTTTATTGCCCGATCCCTTCCCTTTTTTCCTGGCCATCATCT</left_flank>
        <right_flank>TTTACAAAGAATTCTGTTTGTCTGTTTGTCCGGATTACCAGAAATTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTCCAGGTAACCGTTACCCTGAAATACGACCAAGACTCCGGGATACGACCTTCTCAAAAAAGAATTTTCAATGAAAATTCAAATGACATCATCATCAATACTTTCCCTCCATTTTCTCCCACACCCAATCGTTTCGCAACAAAATTCTCCTCAAATTTTCCGCCCCGCGTGCAGCAAATCTGTGGTTTTTGGGGAAAGTAAAAAAGCCGTCAGCAGGCACAGGCAAAGTGATTTGTCAAAAAGTTTAGTCGTCGTGTGTGGGTGGTGGTGTAATTGTTGTGTCTTCTCCTTTTTTTCACTGTCCCTTATACGTACCGTCCATTCTTCCCATTCTTCCCATTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACTCTAATCGTTTTTTCTGCTATTACGTCCCTTCACATCCCTAAAACGGTCAAGGTTTTATTGCCCGATCCCTTCCCTTTTTTCCTGGCCATCATCTTTTTACAAAGAATTCTGTTTGTCTGTTTGTCCGGATTACCAGAAATTTTTCTTTAATTGCGAGAACCTCATTCTTTTTGTCCCAATCTCTCCCACCGTTAAGAAATTGTTTTTTTGAAAACTTGATCTTTGAGCTCAATTATCTCAATTCCTATAAAAGATAGCAAAAAAGAAGTTAACGAATAAAATGTTTATCATTAAATCAGCTACATTTTATCAGCTGACAGATTTTTGATATCTCTCATAGGAAGCGAGATAATTAAGATCAAAGAAGCATGTGTAAGATCAATCAGAGCTAGCCCACCCTATGAGCGCACTTTGAGCATAACTATCTCAACTTCTGTAGGAGATATCAAAAATCTGCAAACTACAAAATGTTGCTGATTTTATGAAAAATATTATATCAGTTCACAAATTCTTGATATCTCTCATAGAAACCGAAATATTTGAGCTTGAAGTGCGAGTTTAGAATCAATCAGAGCTACCGTATTTGCCCAGCACC</canonical>
            <polymorphic>CATTCCAGGTAACCGTTACCCTGAAATACGACCAAGACTCCGGGATACGACCTTCTCAAAAAAGAATTTTCAATGAAAATTCAAATGACATCATCATCAATACTTTCCCTCCATTTTCTCCCACACCCAATCGTTTCGCAACAAAATTCTCCTCAAATTTTCCGCCCCGCGTGCAGCAAATCTGTGGTTTTTGGGGAAAGTAAAAAAGCCGTCAGCAGGCACAGGCAAAGTGATTTGTCAAAAAGTTTAGTCGTCGTGTGTGGGTGGTGGTGTAATTGTTGTGTCTTCTCCTTTTTTTCACTGTCCCTTATACGTACCGTCCATTCTTCCCATTCTTCCCATTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACTCTAATCGTTTTTTCTGCTATTACGTCCCTTCACATCCCTAAAACGGTCAAGGTTTTATTGCCCGATCCCTTCCCTTTTTTCCTGGCCATCATCTYTTTACAAAGAATTCTGTTTGTCTGTTTGTCCGGATTACCAGAAATTTTTCTTTAATTGCGAGAACCTCATTCTTTTTGTCCCAATCTCTCCCACCGTTAAGAAATTGTTTTTTTGAAAACTTGATCTTTGAGCTCAATTATCTCAATTCCTATAAAAGATAGCAAAAAAGAAGTTAACGAATAAAATGTTTATCATTAAATCAGCTACATTTTATCAGCTGACAGATTTTTGATATCTCTCATAGGAAGCGAGATAATTAAGATCAAAGAAGCATGTGTAAGATCAATCAGAGCTAGCCCACCCTATGAGCGCACTTTGAGCATAACTATCTCAACTTCTGTAGGAGATATCAAAAATCTGCAAACTACAAAATGTTGCTGATTTTATGAAAAATATTATATCAGTTCACAAATTCTTGATATCTCTCATAGAAACCGAAATATTTGAGCTTGAAGTGCGAGTTTAGAATCAATCAGAGCTACCGTATTTGCCCAGCACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCCATTCTTCCCATTCTTC</pcr_primer_p1>
		<pcr_primer_p2>AGGTTCTCGCAATTAAAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCCATTCTTCCCATTCTTCCCATTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACTCTAATCGTTTTTTCTGCTATTACGTCCCTTCACATCCCTAAAACGGTCAAGGTTTTATTGCCCGATCCCTTCCCTTTTTTCCTGGCCATCATCTTTTTACAAAGAATTCTGTTTGTCTGTTTGTCCGGATTACCAGAAATTTTTCTTTAATTGCGAGAACCT</canonical_amplicon>
		<polymorphic_amplicon>GTCCATTCTTCCCATTCTTCCCATTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACTCTAATCGTTTTTTCTGCTATTACGTCCCTTCACATCCCTAAAACGGTCAAGGTTTTATTGCCCGATCCCTTCCCTTTTTTCCTGGCCATCATCTYTTTACAAAGAATTCTGTTTGTCTGTTTGTCCGGATTACCAGAAATTTTTCTTTAATTGCGAGAACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23961</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1193087</contig_pos>
        <strand>+</strand>
        <context>ACAAAATATA[C/T]TTTTTTTCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATGAAACCAAAGGTGACCCGAAATTATTTCAACATTCACAAAATATA</left_flank>
        <right_flank>TTTTTTTCGATAGCCTATTAGGCGAACCAAGTTCACACCACCATTTTCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTTGAACATTTCTTGATATCTGACCTGGGAACTGAGATAAACCAATTTCCCGACCCCCTCTCCCCTAAACCAAGATAACCAAAACCAAAGAAACCCTTCTCAGGACCCCGAAGAAGGAGAAGACGCTACCGAAGAGCCAATTCGAATGAAAGGGCGACTATGCTGTTGTGATGGAACCAATAAATGCAACGAGCAAGCAATGTGGGCGGACGAAGGAATCAGTTTGGATGAGCTCAAAGAAGAAATCGAGAAACGAAAAGTGGCGGTGGGCGGAGTCCCAAATTACGATGGATTCCTCGTTTCTACCCTCTTAGTTTTTGTTGCTATGGCTTTTTGAATTCTTTTTTTTTTTTGAATTATTTTTTGACCCAAGCTTATTGCAGTTCTCTTTTTTTGCTTTCTTTTTTTCTCCAATAAAGCGAATTTATTTTGAAAATTAGACCACAGAAAATGAAACCAAAGGTGACCCGAAATTATTTCAACATTCACAAAATATATTTTTTTTCGATAGCCTATTAGGCGAACCAAGTTCACACCACCATTTTCAGAATCCACGTGGCAAGCTCGGAGCTCAGTGTGAAGTTTCGAATGTTGGCGACAGTCTCGACAGTCGTCGCCTCGTGTTTTAATTGCGATGGAGTGATTTGAGGGTTAAATGGAGAACAGCATTCACAGTAGAGGGGTAGGGTGTCGTGGCGAACGGATCTGCACTTGGCACACTGATGATCCTGGATCTGGTAGGCGGTTAGGAGTTGATTCAGACGATCACAGATCATCATGTCGATGACGTCGGAGTTGAGCTTCTGGAAGGAAACATTTTTGACTTATTTTTAAAGAAATTCTGGCTGCTTGTATTAATTTTTTGGTCTAAAAATGGTCTAATATAGGCCAAAAACGGTCTGAACTGGCCCAAAAAATGGTCTAAAATGGTTCAAAAATGGTCTAAAATAGTCCAAAAATGATCTAAAACGGTCCAAAACAGTCTGGAAAAGCCCCTT</canonical>
            <polymorphic>TAGTTGAACATTTCTTGATATCTGACCTGGGAACTGAGATAAACCAATTTCCCGACCCCCTCTCCCCTAAACCAAGATAACCAAAACCAAAGAAACCCTTCTCAGGACCCCGAAGAAGGAGAAGACGCTACCGAAGAGCCAATTCGAATGAAAGGGCGACTATGCTGTTGTGATGGAACCAATAAATGCAACGAGCAAGCAATGTGGGCGGACGAAGGAATCAGTTTGGATGAGCTCAAAGAAGAAATCGAGAAACGAAAAGTGGCGGTGGGCGGAGTCCCAAATTACGATGGATTCCTCGTTTCTACCCTCTTAGTTTTTGTTGCTATGGCTTTTTGAATTCTTTTTTTTTTTTGAATTATTTTTTGACCCAAGCTTATTGCAGTTCTCTTTTTTTGCTTTCTTTTTTTCTCCAATAAAGCGAATTTATTTTGAAAATTAGACCACAGAAAATGAAACCAAAGGTGACCCGAAATTATTTCAACATTCACAAAATATAYTTTTTTTCGATAGCCTATTAGGCGAACCAAGTTCACACCACCATTTTCAGAATCCACGTGGCAAGCTCGGAGCTCAGTGTGAAGTTTCGAATGTTGGCGACAGTCTCGACAGTCGTCGCCTCGTGTTTTAATTGCGATGGAGTGATTTGAGGGTTAAATGGAGAACAGCATTCACAGTAGAGGGGTAGGGTGTCGTGGCGAACGGATCTGCACTTGGCACACTGATGATCCTGGATCTGGTAGGCGGTTAGGAGTTGATTCAGACGATCACAGATCATCATGTCGATGACGTCGGAGTTGAGCTTCTGGAAGGAAACATTTTTGACTTATTTTTAAAGAAATTCTGGCTGCTTGTATTAATTTTTTGGTCTAAAAATGGTCTAATATAGGCCAAAAACGGTCTGAACTGGCCCAAAAAATGGTCTAAAATGGTTCAAAAATGGTCTAAAATAGTCCAAAAATGATCTAAAACGGTCCAAAACAGTCTGGAAAAGCCCCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTAGACCACAGAAAATGA</pcr_primer_p1>
		<pcr_primer_p2>CCTCTACTGTGAATGCTGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTAGACCACAGAAAATGAAACCAAAGGTGACCCGAAATTATTTCAACATTCACAAAATATATTTTTTTTCGATAGCCTATTAGGCGAACCAAGTTCACACCACCATTTTCAGAATCCACGTGGCAAGCTCGGAGCTCAGTGTGAAGTTTCGAATGTTGGCGACAGTCTCGACAGTCGTCGCCTCGTGTTTTAATTGCGATGGAGTGATTTGAGGGTTAAATGGAGAACAGCATTCACAGTAGAGG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTAGACCACAGAAAATGAAACCAAAGGTGACCCGAAATTATTTCAACATTCACAAAATATAYTTTTTTTCGATAGCCTATTAGGCGAACCAAGTTCACACCACCATTTTCAGAATCCACGTGGCAAGCTCGGAGCTCAGTGTGAAGTTTCGAATGTTGGCGACAGTCTCGACAGTCGTCGCCTCGTGTTTTAATTGCGATGGAGTGATTTGAGGGTTAAATGGAGAACAGCATTCACAGTAGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23962</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1195152</contig_pos>
        <strand></strand>
        <context>cgaatgattg[C/A]gktttaaagc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATTCCTAGCCAACAACAGTTCTGAACGCTTTGAAACTAGCCGAATGATTG</left_flank>
        <right_flank>GGTTTAAAGCTAGACTACAAACTACAAACACTTCTAAGCCTCAGTAAACA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTGAGACGTCTGATCACAGGAGAGTGCTCGGCAGATGGCATTGACAAGATACGTGGCACAATGTGCACTTTCTGCGTTGTTATGCACCAGCTTATTGACGACACGATACAACCGATGCGAGATTTTCTGAGAGATGACGTCGGCGCGGAACGTCGCCGCCGATTCCGTATCGAATTGAACTTCTCGATTGGTCTCGAGAAATTCGAGAATAAAGGCGCCGATCATTTGGAGGAACTCATCACGAATATTCGATTCATCTGGCATCTCCTCAGCGATTTTCCAGATGGCTGTGGTCTCGAATTGACGCGTGGCTTGGGGTTGGGAGGAAGAGGAGGTTGGAACGGAGTCGTCGATGACGTCAGGAGAATCAGAATCCTGGAATTATTCAGAATATAGTCTACATTAACCATACATTGACTGTGCTTCTAGCCACTGAAATTTCCAGTATTCCTAGCCAACAACAGTTCTGAACGCTTTGAAACTAGCCGAATGATTGCGGTTTAAAGCTAGACTACAAACTACAAACACTTCTAAGCCTCAGTAAACATTAAGGATTTTACTGAGGCTTAAGTTTTTTGTAGGTTGTAGTCTCTCAATTTTCAAAGCGCCATAACTTGGCTAGTTTTAGACGGTTTAGATTCGTTTTTGGATAGAAATGCAGGAAATTTTGAGGACTACAGACTACACAACTCTCTTAGCCTCAGTAAGCATTGAGGATTTACTGATTTTTAGGTTTTCTTGTAGTTTGTAGTCTCTCAATTTTCAAAGCATCATAACTTTAGACTATTTGGAACTGTTTTTGTATAGAAATCCTGGAAATTTCAAAGACTACAAACTACAAAAACGTTAAGCCTCAGTAAACATTGAGGATTTTACTGAGGCTTAGGTCTTTTTGTAGTTTGTAGTCTCTACATTTTCAAATCACCATAACTTGGCTAGTTTTAGACTGTATGAAACCGTTTTTGGATAGAAATCCTGGGAATTTTAAAGACTACAA</canonical>
            <polymorphic>CAATTGAGACGTCTGATCACAGGAGAGTGCTCGGCAGATGGCATTGACAAGATACGTGGCACAATGTGCACTTTCTGCGTTGTTATGCACCAGCTTATTGACGACACGATACAACCGATGCGAGATTTTCTGAGAGATGACGTCGGCGCGGAACGTCGCCGCCGATTCCGTATCGAATTGAACTTCTCGATTGGTCTCGAGAAATTCGAGAATAAAGGCGCCGATCATTTGGAGGAACTCATCACGAATATTCGATTCATCTGGCATCTCCTCAGCGATTTTCCAGATGGCTGTGGTCTCGAATTGACGCGTGGCTTGGGGTTGGGAGGAAGAGGAGGTTGGAACGGAGTCGTCGATGACGTCAGGAGAATCAGAATCCTGGAATTATTCAGAATATAGTCTACATTAACCATACATTGACTGTGCTTCTAGCCACTGAAATTTCCAGTATTCCTAGCCAACAACAGTTCTGAACGCTTTGAAACTAGCCGAATGATTGMGGTTTAAAGCTAGACTACAAACTACAAACACTTCTAAGCCTCAGTAAACATTAAGGATTTTACTGAGGCTTAAGTTTTTTGTAGGTTGTAGTCTCTCAATTTTCAAAGCGCCATAACTTGGCTAGTTTTAGACGGTTTAGATTCGTTTTTGGATAGAAATGCAGGAAATTTTGAGGACTACAGACTACACAACTCTCTTAGCCTCAGTAAGCATTGAGGATTTACTGATTTTTAGGTTTTCTTGTAGTTTGTAGTCTCTCAATTTTCAAAGCATCATAACTTTAGACTATTTGGAACTGTTTTTGTATAGAAATCCTGGAAATTTCAAAGACTACAAACTACAAAAACGTTAAGCCTCAGTAAACATTGAGGATTTTACTGAGGCTTAGGTCTTTTTGTAGTTTGTAGTCTCTACATTTTCAAATCACCATAACTTGGCTAGTTTTAGACTGTATGAAACCGTTTTTGGATAGAAATCCTGGGAATTTTAAAGACTACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGTATTCCTAGCCAACAA</pcr_primer_p1>
		<pcr_primer_p2>CCTAAAAATCAGTAAATCCTCAA</pcr_primer_p2>
		<pcr_amplicon_size>292</pcr_amplicon_size>
		<canonical_amplicon>CCAGTATTCCTAGCCAACAACAGTTCTGAACGCTTTGAAACTAGCCGAATGATTGCGGTTTAAAGCTAGACTACAAACTACAAACACTTCTAAGCCTCAGTAAACATTAAGGATTTTACTGAGGCTTAAGTTTTTTGTAGGTTGTAGTCTCTCAATTTTCAAAGCGCCATAACTTGGCTAGTTTTAGACGGTTTAGATTCGTTTTTGGATAGAAATGCAGGAAATTTTGAGGACTACAGACTACACAACTCTCTTAGCCTCAGTAAGCATTGAGGATTTACTGATTTTTAGG</canonical_amplicon>
		<polymorphic_amplicon>CCAGTATTCCTAGCCAACAACAGTTCTGAACGCTTTGAAACTAGCCGAATGATTGMGGTTTAAAGCTAGACTACAAACTACAAACACTTCTAAGCCTCAGTAAACATTAAGGATTTTACTGAGGCTTAAGTTTTTTGTAGGTTGTAGTCTCTCAATTTTCAAAGCGCCATAACTTGGCTAGTTTTAGACGGTTTAGATTCGTTTTTGGATAGAAATGCAGGAAATTTTGAGGACTACAGACTACACAACTCTCTTAGCCTCAGTAAGCATTGAGGATTTACTGATTTTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23963</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1195154</contig_pos>
        <strand></strand>
        <context>aatgattgmg[G/T]tttaaagcta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCCTAGCCAACAACAGTTCTGAACGCTTTGAAACTAGCCGAATGATTGCG</left_flank>
        <right_flank>TTTAAAGCTAGACTACAAACTACAAACACTTCTAAGCCTCAGTAAACATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGAGACGTCTGATCACAGGAGAGTGCTCGGCAGATGGCATTGACAAGATACGTGGCACAATGTGCACTTTCTGCGTTGTTATGCACCAGCTTATTGACGACACGATACAACCGATGCGAGATTTTCTGAGAGATGACGTCGGCGCGGAACGTCGCCGCCGATTCCGTATCGAATTGAACTTCTCGATTGGTCTCGAGAAATTCGAGAATAAAGGCGCCGATCATTTGGAGGAACTCATCACGAATATTCGATTCATCTGGCATCTCCTCAGCGATTTTCCAGATGGCTGTGGTCTCGAATTGACGCGTGGCTTGGGGTTGGGAGGAAGAGGAGGTTGGAACGGAGTCGTCGATGACGTCAGGAGAATCAGAATCCTGGAATTATTCAGAATATAGTCTACATTAACCATACATTGACTGTGCTTCTAGCCACTGAAATTTCCAGTATTCCTAGCCAACAACAGTTCTGAACGCTTTGAAACTAGCCGAATGATTGCGGTTTAAAGCTAGACTACAAACTACAAACACTTCTAAGCCTCAGTAAACATTAAGGATTTTACTGAGGCTTAAGTTTTTTGTAGGTTGTAGTCTCTCAATTTTCAAAGCGCCATAACTTGGCTAGTTTTAGACGGTTTAGATTCGTTTTTGGATAGAAATGCAGGAAATTTTGAGGACTACAGACTACACAACTCTCTTAGCCTCAGTAAGCATTGAGGATTTACTGATTTTTAGGTTTTCTTGTAGTTTGTAGTCTCTCAATTTTCAAAGCATCATAACTTTAGACTATTTGGAACTGTTTTTGTATAGAAATCCTGGAAATTTCAAAGACTACAAACTACAAAAACGTTAAGCCTCAGTAAACATTGAGGATTTTACTGAGGCTTAGGTCTTTTTGTAGTTTGTAGTCTCTACATTTTCAAATCACCATAACTTGGCTAGTTTTAGACTGTATGAAACCGTTTTTGGATAGAAATCCTGGGAATTTTAAAGACTACAAAC</canonical>
            <polymorphic>ATTGAGACGTCTGATCACAGGAGAGTGCTCGGCAGATGGCATTGACAAGATACGTGGCACAATGTGCACTTTCTGCGTTGTTATGCACCAGCTTATTGACGACACGATACAACCGATGCGAGATTTTCTGAGAGATGACGTCGGCGCGGAACGTCGCCGCCGATTCCGTATCGAATTGAACTTCTCGATTGGTCTCGAGAAATTCGAGAATAAAGGCGCCGATCATTTGGAGGAACTCATCACGAATATTCGATTCATCTGGCATCTCCTCAGCGATTTTCCAGATGGCTGTGGTCTCGAATTGACGCGTGGCTTGGGGTTGGGAGGAAGAGGAGGTTGGAACGGAGTCGTCGATGACGTCAGGAGAATCAGAATCCTGGAATTATTCAGAATATAGTCTACATTAACCATACATTGACTGTGCTTCTAGCCACTGAAATTTCCAGTATTCCTAGCCAACAACAGTTCTGAACGCTTTGAAACTAGCCGAATGATTGCGKTTTAAAGCTAGACTACAAACTACAAACACTTCTAAGCCTCAGTAAACATTAAGGATTTTACTGAGGCTTAAGTTTTTTGTAGGTTGTAGTCTCTCAATTTTCAAAGCGCCATAACTTGGCTAGTTTTAGACGGTTTAGATTCGTTTTTGGATAGAAATGCAGGAAATTTTGAGGACTACAGACTACACAACTCTCTTAGCCTCAGTAAGCATTGAGGATTTACTGATTTTTAGGTTTTCTTGTAGTTTGTAGTCTCTCAATTTTCAAAGCATCATAACTTTAGACTATTTGGAACTGTTTTTGTATAGAAATCCTGGAAATTTCAAAGACTACAAACTACAAAAACGTTAAGCCTCAGTAAACATTGAGGATTTTACTGAGGCTTAGGTCTTTTTGTAGTTTGTAGTCTCTACATTTTCAAATCACCATAACTTGGCTAGTTTTAGACTGTATGAAACCGTTTTTGGATAGAAATCCTGGGAATTTTAAAGACTACAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGTATTCCTAGCCAACAA</pcr_primer_p1>
		<pcr_primer_p2>CCTAAAAATCAGTAAATCCTCAA</pcr_primer_p2>
		<pcr_amplicon_size>292</pcr_amplicon_size>
		<canonical_amplicon>CCAGTATTCCTAGCCAACAACAGTTCTGAACGCTTTGAAACTAGCCGAATGATTGCGGTTTAAAGCTAGACTACAAACTACAAACACTTCTAAGCCTCAGTAAACATTAAGGATTTTACTGAGGCTTAAGTTTTTTGTAGGTTGTAGTCTCTCAATTTTCAAAGCGCCATAACTTGGCTAGTTTTAGACGGTTTAGATTCGTTTTTGGATAGAAATGCAGGAAATTTTGAGGACTACAGACTACACAACTCTCTTAGCCTCAGTAAGCATTGAGGATTTACTGATTTTTAGG</canonical_amplicon>
		<polymorphic_amplicon>CCAGTATTCCTAGCCAACAACAGTTCTGAACGCTTTGAAACTAGCCGAATGATTGCGKTTTAAAGCTAGACTACAAACTACAAACACTTCTAAGCCTCAGTAAACATTAAGGATTTTACTGAGGCTTAAGTTTTTTGTAGGTTGTAGTCTCTCAATTTTCAAAGCGCCATAACTTGGCTAGTTTTAGACGGTTTAGATTCGTTTTTGGATAGAAATGCAGGAAATTTTGAGGACTACAGACTACACAACTCTCTTAGCCTCAGTAAGCATTGAGGATTTACTGATTTTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23964</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1195203</contig_pos>
        <strand></strand>
        <context>tcagtaaaca[T/C]taaggatttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGTTTAAAGCTAGACTACAAACTACAAACACTTCTAAGCCTCAGTAAACA</left_flank>
        <right_flank>TAAGGATTTTACTGAGGCTTAAGTTTTTTGTAGGTTGTAGTCTCTCAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATACGTGGCACAATGTGCACTTTCTGCGTTGTTATGCACCAGCTTATTGACGACACGATACAACCGATGCGAGATTTTCTGAGAGATGACGTCGGCGCGGAACGTCGCCGCCGATTCCGTATCGAATTGAACTTCTCGATTGGTCTCGAGAAATTCGAGAATAAAGGCGCCGATCATTTGGAGGAACTCATCACGAATATTCGATTCATCTGGCATCTCCTCAGCGATTTTCCAGATGGCTGTGGTCTCGAATTGACGCGTGGCTTGGGGTTGGGAGGAAGAGGAGGTTGGAACGGAGTCGTCGATGACGTCAGGAGAATCAGAATCCTGGAATTATTCAGAATATAGTCTACATTAACCATACATTGACTGTGCTTCTAGCCACTGAAATTTCCAGTATTCCTAGCCAACAACAGTTCTGAACGCTTTGAAACTAGCCGAATGATTGCGGTTTAAAGCTAGACTACAAACTACAAACACTTCTAAGCCTCAGTAAACATTAAGGATTTTACTGAGGCTTAAGTTTTTTGTAGGTTGTAGTCTCTCAATTTTCAAAGCGCCATAACTTGGCTAGTTTTAGACGGTTTAGATTCGTTTTTGGATAGAAATGCAGGAAATTTTGAGGACTACAGACTACACAACTCTCTTAGCCTCAGTAAGCATTGAGGATTTACTGATTTTTAGGTTTTCTTGTAGTTTGTAGTCTCTCAATTTTCAAAGCATCATAACTTTAGACTATTTGGAACTGTTTTTGTATAGAAATCCTGGAAATTTCAAAGACTACAAACTACAAAAACGTTAAGCCTCAGTAAACATTGAGGATTTTACTGAGGCTTAGGTCTTTTTGTAGTTTGTAGTCTCTACATTTTCAAATCACCATAACTTGGCTAGTTTTAGACTGTATGAAACCGTTTTTGGATAGAAATCCTGGGAATTTTAAAGACTACAAACTACACATTTTTATAAGCCTCAGTAAAGTCGTCTAACTGATTTTTGGCTA</canonical>
            <polymorphic>ATACGTGGCACAATGTGCACTTTCTGCGTTGTTATGCACCAGCTTATTGACGACACGATACAACCGATGCGAGATTTTCTGAGAGATGACGTCGGCGCGGAACGTCGCCGCCGATTCCGTATCGAATTGAACTTCTCGATTGGTCTCGAGAAATTCGAGAATAAAGGCGCCGATCATTTGGAGGAACTCATCACGAATATTCGATTCATCTGGCATCTCCTCAGCGATTTTCCAGATGGCTGTGGTCTCGAATTGACGCGTGGCTTGGGGTTGGGAGGAAGAGGAGGTTGGAACGGAGTCGTCGATGACGTCAGGAGAATCAGAATCCTGGAATTATTCAGAATATAGTCTACATTAACCATACATTGACTGTGCTTCTAGCCACTGAAATTTCCAGTATTCCTAGCCAACAACAGTTCTGAACGCTTTGAAACTAGCCGAATGATTGCGGTTTAAAGCTAGACTACAAACTACAAACACTTCTAAGCCTCAGTAAACAYTAAGGATTTTACTGAGGCTTAAGTTTTTTGTAGGTTGTAGTCTCTCAATTTTCAAAGCGCCATAACTTGGCTAGTTTTAGACGGTTTAGATTCGTTTTTGGATAGAAATGCAGGAAATTTTGAGGACTACAGACTACACAACTCTCTTAGCCTCAGTAAGCATTGAGGATTTACTGATTTTTAGGTTTTCTTGTAGTTTGTAGTCTCTCAATTTTCAAAGCATCATAACTTTAGACTATTTGGAACTGTTTTTGTATAGAAATCCTGGAAATTTCAAAGACTACAAACTACAAAAACGTTAAGCCTCAGTAAACATTGAGGATTTTACTGAGGCTTAGGTCTTTTTGTAGTTTGTAGTCTCTACATTTTCAAATCACCATAACTTGGCTAGTTTTAGACTGTATGAAACCGTTTTTGGATAGAAATCCTGGGAATTTTAAAGACTACAAACTACACATTTTTATAAGCCTCAGTAAAGTCGTCTAACTGATTTTTGGCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>355 280 138 98 63 47 19</canonical_bands>
                <polymorphic_bands>355 280 138 98 66 63</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAGTATTCCTAGCCAACAA</pcr_primer_p1>
		<pcr_primer_p2>CCTAAAAATCAGTAAATCCTCAA</pcr_primer_p2>
		<pcr_amplicon_size>292</pcr_amplicon_size>
		<canonical_amplicon>CCAGTATTCCTAGCCAACAACAGTTCTGAACGCTTTGAAACTAGCCGAATGATTGCGGTTTAAAGCTAGACTACAAACTACAAACACTTCTAAGCCTCAGTAAACATTAAGGATTTTACTGAGGCTTAAGTTTTTTGTAGGTTGTAGTCTCTCAATTTTCAAAGCGCCATAACTTGGCTAGTTTTAGACGGTTTAGATTCGTTTTTGGATAGAAATGCAGGAAATTTTGAGGACTACAGACTACACAACTCTCTTAGCCTCAGTAAGCATTGAGGATTTACTGATTTTTAGG</canonical_amplicon>
		<polymorphic_amplicon>CCAGTATTCCTAGCCAACAACAGTTCTGAACGCTTTGAAACTAGCCGAATGATTGCGGTTTAAAGCTAGACTACAAACTACAAACACTTCTAAGCCTCAGTAAACAYTAAGGATTTTACTGAGGCTTAAGTTTTTTGTAGGTTGTAGTCTCTCAATTTTCAAAGCGCCATAACTTGGCTAGTTTTAGACGGTTTAGATTCGTTTTTGGATAGAAATGCAGGAAATTTTGAGGACTACAGACTACACAACTCTCTTAGCCTCAGTAAGCATTGAGGATTTACTGATTTTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23965</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1195247</contig_pos>
        <strand></strand>
        <context>gttgtagtct[C/G]tcaattttca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAAACATTAAGGATTTTACTGAGGCTTAAGTTTTTTGTAGGTTGTAGTCT</left_flank>
        <right_flank>TCAATTTTCAAAGCGCCATAACTTGGCTAGTTTTAGACGGTTTAGATTCG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTGACGACACGATACAACCGATGCGAGATTTTCTGAGAGATGACGTCGGCGCGGAACGTCGCCGCCGATTCCGTATCGAATTGAACTTCTCGATTGGTCTCGAGAAATTCGAGAATAAAGGCGCCGATCATTTGGAGGAACTCATCACGAATATTCGATTCATCTGGCATCTCCTCAGCGATTTTCCAGATGGCTGTGGTCTCGAATTGACGCGTGGCTTGGGGTTGGGAGGAAGAGGAGGTTGGAACGGAGTCGTCGATGACGTCAGGAGAATCAGAATCCTGGAATTATTCAGAATATAGTCTACATTAACCATACATTGACTGTGCTTCTAGCCACTGAAATTTCCAGTATTCCTAGCCAACAACAGTTCTGAACGCTTTGAAACTAGCCGAATGATTGCGGTTTAAAGCTAGACTACAAACTACAAACACTTCTAAGCCTCAGTAAACATTAAGGATTTTACTGAGGCTTAAGTTTTTTGTAGGTTGTAGTCTCTCAATTTTCAAAGCGCCATAACTTGGCTAGTTTTAGACGGTTTAGATTCGTTTTTGGATAGAAATGCAGGAAATTTTGAGGACTACAGACTACACAACTCTCTTAGCCTCAGTAAGCATTGAGGATTTACTGATTTTTAGGTTTTCTTGTAGTTTGTAGTCTCTCAATTTTCAAAGCATCATAACTTTAGACTATTTGGAACTGTTTTTGTATAGAAATCCTGGAAATTTCAAAGACTACAAACTACAAAAACGTTAAGCCTCAGTAAACATTGAGGATTTTACTGAGGCTTAGGTCTTTTTGTAGTTTGTAGTCTCTACATTTTCAAATCACCATAACTTGGCTAGTTTTAGACTGTATGAAACCGTTTTTGGATAGAAATCCTGGGAATTTTAAAGACTACAAACTACACATTTTTATAAGCCTCAGTAAAGTCGTCTAACTGATTTTTGGCTAATTTTTTTCTCCAAAAACTCCCATTCTCACCCCATCAACAATAC</canonical>
            <polymorphic>TATTGACGACACGATACAACCGATGCGAGATTTTCTGAGAGATGACGTCGGCGCGGAACGTCGCCGCCGATTCCGTATCGAATTGAACTTCTCGATTGGTCTCGAGAAATTCGAGAATAAAGGCGCCGATCATTTGGAGGAACTCATCACGAATATTCGATTCATCTGGCATCTCCTCAGCGATTTTCCAGATGGCTGTGGTCTCGAATTGACGCGTGGCTTGGGGTTGGGAGGAAGAGGAGGTTGGAACGGAGTCGTCGATGACGTCAGGAGAATCAGAATCCTGGAATTATTCAGAATATAGTCTACATTAACCATACATTGACTGTGCTTCTAGCCACTGAAATTTCCAGTATTCCTAGCCAACAACAGTTCTGAACGCTTTGAAACTAGCCGAATGATTGCGGTTTAAAGCTAGACTACAAACTACAAACACTTCTAAGCCTCAGTAAACATTAAGGATTTTACTGAGGCTTAAGTTTTTTGTAGGTTGTAGTCTSTCAATTTTCAAAGCGCCATAACTTGGCTAGTTTTAGACGGTTTAGATTCGTTTTTGGATAGAAATGCAGGAAATTTTGAGGACTACAGACTACACAACTCTCTTAGCCTCAGTAAGCATTGAGGATTTACTGATTTTTAGGTTTTCTTGTAGTTTGTAGTCTCTCAATTTTCAAAGCATCATAACTTTAGACTATTTGGAACTGTTTTTGTATAGAAATCCTGGAAATTTCAAAGACTACAAACTACAAAAACGTTAAGCCTCAGTAAACATTGAGGATTTTACTGAGGCTTAGGTCTTTTTGTAGTTTGTAGTCTCTACATTTTCAAATCACCATAACTTGGCTAGTTTTAGACTGTATGAAACCGTTTTTGGATAGAAATCCTGGGAATTTTAAAGACTACAAACTACACATTTTTATAAGCCTCAGTAAAGTCGTCTAACTGATTTTTGGCTAATTTTTTTCTCCAAAAACTCCCATTCTCACCCCATCAACAATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGTATTCCTAGCCAACAA</pcr_primer_p1>
		<pcr_primer_p2>CCTAAAAATCAGTAAATCCTCAA</pcr_primer_p2>
		<pcr_amplicon_size>292</pcr_amplicon_size>
		<canonical_amplicon>CCAGTATTCCTAGCCAACAACAGTTCTGAACGCTTTGAAACTAGCCGAATGATTGCGGTTTAAAGCTAGACTACAAACTACAAACACTTCTAAGCCTCAGTAAACATTAAGGATTTTACTGAGGCTTAAGTTTTTTGTAGGTTGTAGTCTCTCAATTTTCAAAGCGCCATAACTTGGCTAGTTTTAGACGGTTTAGATTCGTTTTTGGATAGAAATGCAGGAAATTTTGAGGACTACAGACTACACAACTCTCTTAGCCTCAGTAAGCATTGAGGATTTACTGATTTTTAGG</canonical_amplicon>
		<polymorphic_amplicon>CCAGTATTCCTAGCCAACAACAGTTCTGAACGCTTTGAAACTAGCCGAATGATTGCGGTTTAAAGCTAGACTACAAACTACAAACACTTCTAAGCCTCAGTAAACATTAAGGATTTTACTGAGGCTTAAGTTTTTTGTAGGTTGTAGTCTSTCAATTTTCAAAGCGCCATAACTTGGCTAGTTTTAGACGGTTTAGATTCGTTTTTGGATAGAAATGCAGGAAATTTTGAGGACTACAGACTACACAACTCTCTTAGCCTCAGTAAGCATTGAGGATTTACTGATTTTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23966</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1227749</contig_pos>
        <strand>+</strand>
        <context>AATTTTTAAT[C/T]TTTCCAAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATTCCTTATTTTTTCTGTTTGGGTTTTAAAAACTGGAAATTTTTAAT</left_flank>
        <right_flank>TTTCCAAGAATTCGAAAACATTTAATTTTCAGCCTAAAATCTGAAATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGAAATTTTTGAAATTTTGAAAATTTAAAAACAAAATTTCAGGAAAATCAAATTTTCAGATTTTCAGAAGAATCTTTTTGAAAAGTTCCACGTTGCAAATTGAAGATTACTGTAGGTAGAGTAACCCTGAAAGGTTTCAGGCTAAAACAAAAGAACGGACATACAGACACACTTACAGAGTAAACAGGAAAGCAATGAAAACATTTTGTAGTTTGTCTTTTCTGTGTTTTCGAAGAAACCTGAAACTTAAAACGGCATGAAGGGGGATTATTTTTCACCTGTTTCAAGCTTTTCAAGTTTTTCAAAAAATTTTCACTTCCAAAAAAGTTGAAAAGTTGTCAAACAGCGAAAAGAAGAATGCTGCAAAATTTTAGATATTTTTCGAATTTTCTTAACAAATTGGATATTTTTGGAAAATTCAAAAATTAGTTTTTTTTTTAGTTTTTCAAAAATTCCTTATTTTTTCTGTTTGGGTTTTAAAAACTGGAAATTTTTAATTTTTCCAAGAATTCGAAAACATTTAATTTTCAGCCTAAAATCTGAAATTTTCCACAATTTTTCAGCTTTTCAGATTTTTCCACTTTTTCGAATAAATTCTCAATTTCCATTTTCAACCGCTTTGCAGTTACTGTAGAAGCTAAAAACCCTTCAAAACTACAGTATTCCCATTTTGCGTTAAAGTCAAATTACTGTGTTCCTCGCTAATAGAAGCCCACCCAAACTGGCAAAGTCGAGCTCAATTATCTCGATTCCTGTAAGAGATATCAAAAAGTGGTCAAATGAAAAAATGTTGCTGATTTTATGATAAACATTTGGCCAGTTAACAGATTTTTGTTATCTCTTACAGAAAATGAGATAATTCAGCTCAAATTTTAAAAAAATCCGCGCTTGCAGCAGCGGCTGCGGACATCTGAACTTTGAGGCATTCTATCTCAGTTCCTATCAGAGATATCAAAAAGTAGTAAACTGATGAAATATTTTTGATATTATGATAAACAT</canonical>
            <polymorphic>GGGAAATTTTTGAAATTTTGAAAATTTAAAAACAAAATTTCAGGAAAATCAAATTTTCAGATTTTCAGAAGAATCTTTTTGAAAAGTTCCACGTTGCAAATTGAAGATTACTGTAGGTAGAGTAACCCTGAAAGGTTTCAGGCTAAAACAAAAGAACGGACATACAGACACACTTACAGAGTAAACAGGAAAGCAATGAAAACATTTTGTAGTTTGTCTTTTCTGTGTTTTCGAAGAAACCTGAAACTTAAAACGGCATGAAGGGGGATTATTTTTCACCTGTTTCAAGCTTTTCAAGTTTTTCAAAAAATTTTCACTTCCAAAAAAGTTGAAAAGTTGTCAAACAGCGAAAAGAAGAATGCTGCAAAATTTTAGATATTTTTCGAATTTTCTTAACAAATTGGATATTTTTGGAAAATTCAAAAATTAGTTTTTTTTTTAGTTTTTCAAAAATTCCTTATTTTTTCTGTTTGGGTTTTAAAAACTGGAAATTTTTAATYTTTCCAAGAATTCGAAAACATTTAATTTTCAGCCTAAAATCTGAAATTTTCCACAATTTTTCAGCTTTTCAGATTTTTCCACTTTTTCGAATAAATTCTCAATTTCCATTTTCAACCGCTTTGCAGTTACTGTAGAAGCTAAAAACCCTTCAAAACTACAGTATTCCCATTTTGCGTTAAAGTCAAATTACTGTGTTCCTCGCTAATAGAAGCCCACCCAAACTGGCAAAGTCGAGCTCAATTATCTCGATTCCTGTAAGAGATATCAAAAAGTGGTCAAATGAAAAAATGTTGCTGATTTTATGATAAACATTTGGCCAGTTAACAGATTTTTGTTATCTCTTACAGAAAATGAGATAATTCAGCTCAAATTTTAAAAAAATCCGCGCTTGCAGCAGCGGCTGCGGACATCTGAACTTTGAGGCATTCTATCTCAGTTCCTATCAGAGATATCAAAAAGTAGTAAACTGATGAAATATTTTTGATATTATGATAAACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>210 131 119 85 59 54 47 39 38 27 21 18 18 16 15 13 13 12 11 10 9 9 8 7 7 4</canonical_bands>
                <polymorphic_bands>210 131 119 85 59 54 47 39 38 27 21 19 18 18 16 15 13 13 11 10 9 9 8 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAATGCTGCAAAATTTTAGATA</pcr_primer_p1>
		<pcr_primer_p2>AGAATTTATTCGAAAAAGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AGAATGCTGCAAAATTTTAGATATTTTTCGAATTTTCTTAACAAATTGGATATTTTTGGAAAATTCAAAAATTAGTTTTTTTTTTAGTTTTTCAAAAATTCCTTATTTTTTCTGTTTGGGTTTTAAAAACTGGAAATTTTTAATTTTTCCAAGAATTCGAAAACATTTAATTTTCAGCCTAAAATCTGAAATTTTCCACAATTTTTCAGCTTTTCAGATTTTTCCACTTTTTCGAATAAATTCT</canonical_amplicon>
		<polymorphic_amplicon>AGAATGCTGCAAAATTTTAGATATTTTTCGAATTTTCTTAACAAATTGGATATTTTTGGAAAATTCAAAAATTAGTTTTTTTTTTAGTTTTTCAAAAATTCCTTATTTTTTCTGTTTGGGTTTTAAAAACTGGAAATTTTTAATYTTTCCAAGAATTCGAAAACATTTAATTTTCAGCCTAAAATCTGAAATTTTCCACAATTTTTCAGCTTTTCAGATTTTTCCACTTTTTCGAATAAATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23967</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1236212</contig_pos>
        <strand>+</strand>
        <context>TTGACAGTTT[C/T]GGTGAATATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCAGACACCCTATTCATAGTATCATTTGTGCACCTGCAATTGACAGTTT</left_flank>
        <right_flank>GGTGAATATTGTGATTATTGTTGCTCCGAAATTCTACCTATCCAATGGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATTTTCAGGAATTCAGAAATCCACGTGGCAAATTTTTTTTCCAGGAATCTTCAAGAATATCGAGTGCGGAAGGCGCAACATGTATCGGTTCGAGAGCAGGATATGCTGAAATATCTAGCTGCCATGTTGGCCCTAACCATCACTGGTCTGATGGCTTGGACCGTTGGCTCATGGGGAGACACTGCTCTTTGGAGGACTGCCTGGCCGCAGTGTCTTATGCAGGGATGGCATGTCATTTGGCATGGCTACGAACTGCTATTCCTGCTATATGCAGTCCGTTTGTGTTATAAAGCCAGGAATAGTGACTGGTTGGAGAGATGGCAGTTCACTGTGGCGGTATGCTTAGAAGCTGTCATTACATTGATGGCTAATTTGATTAGGTAAACCTATTTTTTGGATTTTAATTTTTAAGAAAATATTTAGGTACTCTATTCGAAATTCTGGACGGGCAGACACCCTATTCATAGTATCATTTGTGCACCTGCAATTGACAGTTTCGGTGAATATTGTGATTATTGTTGCTCCGAAATTCTACCTATCCAATGGAGAGCCCAGCCGACGATCGATGACACTGGGAGGACACTCGGGGCGGGCGCATCCGTCGCTGGCAAAACTCAGAGATAATATTCTGAACGGAACCATTGACTTTGCCGAAGTTCCGATCGTTGACATGAATCCAGAGGATATTCGAGTAAGGAAGTGACCCGATTTCCTGTTTTCTATTGTTTTTATTTTGCAGGCTGAGCTGAAGCGTGTCTACACGCAACTGCGAATGTACAAGTTGAAGAATTTGTATCAAGACAATCCGCACATTTCGAAGAAGCGGGGAGGGAAGAAATGGAGCGATAAGAATACCAAAGCGACGCGACGGATCTCGATACCGTCGTGTTCGCCACAAGCCAAACGGATAGAGGAGGACGAGAAGAGTGATCTGACAGTGGAGTCGTCGCCCCATAACATCTATTTGAGCAATTTCAAAGGAGCAAATGTGAATAACA</canonical>
            <polymorphic>GGATTTTCAGGAATTCAGAAATCCACGTGGCAAATTTTTTTTCCAGGAATCTTCAAGAATATCGAGTGCGGAAGGCGCAACATGTATCGGTTCGAGAGCAGGATATGCTGAAATATCTAGCTGCCATGTTGGCCCTAACCATCACTGGTCTGATGGCTTGGACCGTTGGCTCATGGGGAGACACTGCTCTTTGGAGGACTGCCTGGCCGCAGTGTCTTATGCAGGGATGGCATGTCATTTGGCATGGCTACGAACTGCTATTCCTGCTATATGCAGTCCGTTTGTGTTATAAAGCCAGGAATAGTGACTGGTTGGAGAGATGGCAGTTCACTGTGGCGGTATGCTTAGAAGCTGTCATTACATTGATGGCTAATTTGATTAGGTAAACCTATTTTTTGGATTTTAATTTTTAAGAAAATATTTAGGTACTCTATTCGAAATTCTGGACGGGCAGACACCCTATTCATAGTATCATTTGTGCACCTGCAATTGACAGTTTYGGTGAATATTGTGATTATTGTTGCTCCGAAATTCTACCTATCCAATGGAGAGCCCAGCCGACGATCGATGACACTGGGAGGACACTCGGGGCGGGCGCATCCGTCGCTGGCAAAACTCAGAGATAATATTCTGAACGGAACCATTGACTTTGCCGAAGTTCCGATCGTTGACATGAATCCAGAGGATATTCGAGTAAGGAAGTGACCCGATTTCCTGTTTTCTATTGTTTTTATTTTGCAGGCTGAGCTGAAGCGTGTCTACACGCAACTGCGAATGTACAAGTTGAAGAATTTGTATCAAGACAATCCGCACATTTCGAAGAAGCGGGGAGGGAAGAAATGGAGCGATAAGAATACCAAAGCGACGCGACGGATCTCGATACCGTCGTGTTCGCCACAAGCCAAACGGATAGAGGAGGACGAGAAGAGTGATCTGACAGTGGAGTCGTCGCCCCATAACATCTATTTGAGCAATTTCAAAGGAGCAAATGTGAATAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAGGTACTCTATTCGAAATTCTG</pcr_primer_p1>
		<pcr_primer_p2>TATCCTCTGGATTCATGTCAA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>TTTAGGTACTCTATTCGAAATTCTGGACGGGCAGACACCCTATTCATAGTATCATTTGTGCACCTGCAATTGACAGTTTCGGTGAATATTGTGATTATTGTTGCTCCGAAATTCTACCTATCCAATGGAGAGCCCAGCCGACGATCGATGACACTGGGAGGACACTCGGGGCGGGCGCATCCGTCGCTGGCAAAACTCAGAGATAATATTCTGAACGGAACCATTGACTTTGCCGAAGTTCCGATCGTTGACATGAATCCAGAGGATA</canonical_amplicon>
		<polymorphic_amplicon>TTTAGGTACTCTATTCGAAATTCTGGACGGGCAGACACCCTATTCATAGTATCATTTGTGCACCTGCAATTGACAGTTTYGGTGAATATTGTGATTATTGTTGCTCCGAAATTCTACCTATCCAATGGAGAGCCCAGCCGACGATCGATGACACTGGGAGGACACTCGGGGCGGGCGCATCCGTCGCTGGCAAAACTCAGAGATAATATTCTGAACGGAACCATTGACTTTGCCGAAGTTCCGATCGTTGACATGAATCCAGAGGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23968</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1236248</contig_pos>
        <strand>+</strand>
        <context>CCGAAATTCT[A/G]CCTATCCAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCAATTGACAGTTTCGGTGAATATTGTGATTATTGTTGCTCCGAAATTCT</left_flank>
        <right_flank>CCTATCCAATGGAGAGCCCAGCCGACGATCGATGACACTGGGAGGACACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTCCAGGAATCTTCAAGAATATCGAGTGCGGAAGGCGCAACATGTATCGGTTCGAGAGCAGGATATGCTGAAATATCTAGCTGCCATGTTGGCCCTAACCATCACTGGTCTGATGGCTTGGACCGTTGGCTCATGGGGAGACACTGCTCTTTGGAGGACTGCCTGGCCGCAGTGTCTTATGCAGGGATGGCATGTCATTTGGCATGGCTACGAACTGCTATTCCTGCTATATGCAGTCCGTTTGTGTTATAAAGCCAGGAATAGTGACTGGTTGGAGAGATGGCAGTTCACTGTGGCGGTATGCTTAGAAGCTGTCATTACATTGATGGCTAATTTGATTAGGTAAACCTATTTTTTGGATTTTAATTTTTAAGAAAATATTTAGGTACTCTATTCGAAATTCTGGACGGGCAGACACCCTATTCATAGTATCATTTGTGCACCTGCAATTGACAGTTTCGGTGAATATTGTGATTATTGTTGCTCCGAAATTCTACCTATCCAATGGAGAGCCCAGCCGACGATCGATGACACTGGGAGGACACTCGGGGCGGGCGCATCCGTCGCTGGCAAAACTCAGAGATAATATTCTGAACGGAACCATTGACTTTGCCGAAGTTCCGATCGTTGACATGAATCCAGAGGATATTCGAGTAAGGAAGTGACCCGATTTCCTGTTTTCTATTGTTTTTATTTTGCAGGCTGAGCTGAAGCGTGTCTACACGCAACTGCGAATGTACAAGTTGAAGAATTTGTATCAAGACAATCCGCACATTTCGAAGAAGCGGGGAGGGAAGAAATGGAGCGATAAGAATACCAAAGCGACGCGACGGATCTCGATACCGTCGTGTTCGCCACAAGCCAAACGGATAGAGGAGGACGAGAAGAGTGATCTGACAGTGGAGTCGTCGCCCCATAACATCTATTTGAGCAATTTCAAAGGAGCAAATGTGAATAACATTGAGCAACACAATTCAGTTCGGGTCTAGAAGCTCA</canonical>
            <polymorphic>TTTTTTCCAGGAATCTTCAAGAATATCGAGTGCGGAAGGCGCAACATGTATCGGTTCGAGAGCAGGATATGCTGAAATATCTAGCTGCCATGTTGGCCCTAACCATCACTGGTCTGATGGCTTGGACCGTTGGCTCATGGGGAGACACTGCTCTTTGGAGGACTGCCTGGCCGCAGTGTCTTATGCAGGGATGGCATGTCATTTGGCATGGCTACGAACTGCTATTCCTGCTATATGCAGTCCGTTTGTGTTATAAAGCCAGGAATAGTGACTGGTTGGAGAGATGGCAGTTCACTGTGGCGGTATGCTTAGAAGCTGTCATTACATTGATGGCTAATTTGATTAGGTAAACCTATTTTTTGGATTTTAATTTTTAAGAAAATATTTAGGTACTCTATTCGAAATTCTGGACGGGCAGACACCCTATTCATAGTATCATTTGTGCACCTGCAATTGACAGTTTCGGTGAATATTGTGATTATTGTTGCTCCGAAATTCTRCCTATCCAATGGAGAGCCCAGCCGACGATCGATGACACTGGGAGGACACTCGGGGCGGGCGCATCCGTCGCTGGCAAAACTCAGAGATAATATTCTGAACGGAACCATTGACTTTGCCGAAGTTCCGATCGTTGACATGAATCCAGAGGATATTCGAGTAAGGAAGTGACCCGATTTCCTGTTTTCTATTGTTTTTATTTTGCAGGCTGAGCTGAAGCGTGTCTACACGCAACTGCGAATGTACAAGTTGAAGAATTTGTATCAAGACAATCCGCACATTTCGAAGAAGCGGGGAGGGAAGAAATGGAGCGATAAGAATACCAAAGCGACGCGACGGATCTCGATACCGTCGTGTTCGCCACAAGCCAAACGGATAGAGGAGGACGAGAAGAGTGATCTGACAGTGGAGTCGTCGCCCCATAACATCTATTTGAGCAATTTCAAAGGAGCAAATGTGAATAACATTGAGCAACACAATTCAGTTCGGGTCTAGAAGCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGACACCCTATTCATAGTATC</pcr_primer_p1>
		<pcr_primer_p2>TTCCTTACTCGAATATCCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCAGACACCCTATTCATAGTATCATTTGTGCACCTGCAATTGACAGTTTCGGTGAATATTGTGATTATTGTTGCTCCGAAATTCTACCTATCCAATGGAGAGCCCAGCCGACGATCGATGACACTGGGAGGACACTCGGGGCGGGCGCATCCGTCGCTGGCAAAACTCAGAGATAATATTCTGAACGGAACCATTGACTTTGCCGAAGTTCCGATCGTTGACATGAATCCAGAGGATATTCGAGTAAGGAA</canonical_amplicon>
		<polymorphic_amplicon>GCAGACACCCTATTCATAGTATCATTTGTGCACCTGCAATTGACAGTTTCGGTGAATATTGTGATTATTGTTGCTCCGAAATTCTRCCTATCCAATGGAGAGCCCAGCCGACGATCGATGACACTGGGAGGACACTCGGGGCGGGCGCATCCGTCGCTGGCAAAACTCAGAGATAATATTCTGAACGGAACCATTGACTTTGCCGAAGTTCCGATCGTTGACATGAATCCAGAGGATATTCGAGTAAGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23969</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1236325</contig_pos>
        <strand>+</strand>
        <context>GTCGCTGGCA[A/T]WMCTCMGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATCGATGACACTGGGAGGACACTCGGGGCGGGCGCATCCGTCGCTGGCA</left_flank>
        <right_flank>AACTCAGAGATAATATTCTGAACGGAACCATTGACTTTGCCGAAGTTCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCTAGCTGCCATGTTGGCCCTAACCATCACTGGTCTGATGGCTTGGACCGTTGGCTCATGGGGAGACACTGCTCTTTGGAGGACTGCCTGGCCGCAGTGTCTTATGCAGGGATGGCATGTCATTTGGCATGGCTACGAACTGCTATTCCTGCTATATGCAGTCCGTTTGTGTTATAAAGCCAGGAATAGTGACTGGTTGGAGAGATGGCAGTTCACTGTGGCGGTATGCTTAGAAGCTGTCATTACATTGATGGCTAATTTGATTAGGTAAACCTATTTTTTGGATTTTAATTTTTAAGAAAATATTTAGGTACTCTATTCGAAATTCTGGACGGGCAGACACCCTATTCATAGTATCATTTGTGCACCTGCAATTGACAGTTTCGGTGAATATTGTGATTATTGTTGCTCCGAAATTCTACCTATCCAATGGAGAGCCCAGCCGACGATCGATGACACTGGGAGGACACTCGGGGCGGGCGCATCCGTCGCTGGCAAAACTCAGAGATAATATTCTGAACGGAACCATTGACTTTGCCGAAGTTCCGATCGTTGACATGAATCCAGAGGATATTCGAGTAAGGAAGTGACCCGATTTCCTGTTTTCTATTGTTTTTATTTTGCAGGCTGAGCTGAAGCGTGTCTACACGCAACTGCGAATGTACAAGTTGAAGAATTTGTATCAAGACAATCCGCACATTTCGAAGAAGCGGGGAGGGAAGAAATGGAGCGATAAGAATACCAAAGCGACGCGACGGATCTCGATACCGTCGTGTTCGCCACAAGCCAAACGGATAGAGGAGGACGAGAAGAGTGATCTGACAGTGGAGTCGTCGCCCCATAACATCTATTTGAGCAATTTCAAAGGAGCAAATGTGAATAACATTGAGCAACACAATTCAGTTCGGGTCTAGAAGCTCACTTATATTTCTTTCTGTGCACTTTTCATTGTTGNNNNNNNNNNNNTTAATTTATAATCAAAATCCTTTTATCGATTT</canonical>
            <polymorphic>TATCTAGCTGCCATGTTGGCCCTAACCATCACTGGTCTGATGGCTTGGACCGTTGGCTCATGGGGAGACACTGCTCTTTGGAGGACTGCCTGGCCGCAGTGTCTTATGCAGGGATGGCATGTCATTTGGCATGGCTACGAACTGCTATTCCTGCTATATGCAGTCCGTTTGTGTTATAAAGCCAGGAATAGTGACTGGTTGGAGAGATGGCAGTTCACTGTGGCGGTATGCTTAGAAGCTGTCATTACATTGATGGCTAATTTGATTAGGTAAACCTATTTTTTGGATTTTAATTTTTAAGAAAATATTTAGGTACTCTATTCGAAATTCTGGACGGGCAGACACCCTATTCATAGTATCATTTGTGCACCTGCAATTGACAGTTTCGGTGAATATTGTGATTATTGTTGCTCCGAAATTCTACCTATCCAATGGAGAGCCCAGCCGACGATCGATGACACTGGGAGGACACTCGGGGCGGGCGCATCCGTCGCTGGCAWAACTCAGAGATAATATTCTGAACGGAACCATTGACTTTGCCGAAGTTCCGATCGTTGACATGAATCCAGAGGATATTCGAGTAAGGAAGTGACCCGATTTCCTGTTTTCTATTGTTTTTATTTTGCAGGCTGAGCTGAAGCGTGTCTACACGCAACTGCGAATGTACAAGTTGAAGAATTTGTATCAAGACAATCCGCACATTTCGAAGAAGCGGGGAGGGAAGAAATGGAGCGATAAGAATACCAAAGCGACGCGACGGATCTCGATACCGTCGTGTTCGCCACAAGCCAAACGGATAGAGGAGGACGAGAAGAGTGATCTGACAGTGGAGTCGTCGCCCCATAACATCTATTTGAGCAATTTCAAAGGAGCAAATGTGAATAACATTGAGCAACACAATTCAGTTCGGGTCTAGAAGCTCACTTATATTTCTTTCTGTGCACTTTTCATTGTTGNNNNNNNNNNNNTTAATTTATAATCAAAATCCTTTTATCGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGACACCCTATTCATAGTATC</pcr_primer_p1>
		<pcr_primer_p2>TTCCTTACTCGAATATCCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCAGACACCCTATTCATAGTATCATTTGTGCACCTGCAATTGACAGTTTCGGTGAATATTGTGATTATTGTTGCTCCGAAATTCTACCTATCCAATGGAGAGCCCAGCCGACGATCGATGACACTGGGAGGACACTCGGGGCGGGCGCATCCGTCGCTGGCAAAACTCAGAGATAATATTCTGAACGGAACCATTGACTTTGCCGAAGTTCCGATCGTTGACATGAATCCAGAGGATATTCGAGTAAGGAA</canonical_amplicon>
		<polymorphic_amplicon>GCAGACACCCTATTCATAGTATCATTTGTGCACCTGCAATTGACAGTTTCGGTGAATATTGTGATTATTGTTGCTCCGAAATTCTACCTATCCAATGGAGAGCCCAGCCGACGATCGATGACACTGGGAGGACACTCGGGGCGGGCGCATCCGTCGCTGGCAWAACTCAGAGATAATATTCTGAACGGAACCATTGACTTTGCCGAAGTTCCGATCGTTGACATGAATCCAGAGGATATTCGAGTAAGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23970</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1236326</contig_pos>
        <strand>+</strand>
        <context>TCGCTGGCAW[A/T]MCTCMGAGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCGATGACACTGGGAGGACACTCGGGGCGGGCGCATCCGTCGCTGGCAA</left_flank>
        <right_flank>ACTCAGAGATAATATTCTGAACGGAACCATTGACTTTGCCGAAGTTCCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTAGCTGCCATGTTGGCCCTAACCATCACTGGTCTGATGGCTTGGACCGTTGGCTCATGGGGAGACACTGCTCTTTGGAGGACTGCCTGGCCGCAGTGTCTTATGCAGGGATGGCATGTCATTTGGCATGGCTACGAACTGCTATTCCTGCTATATGCAGTCCGTTTGTGTTATAAAGCCAGGAATAGTGACTGGTTGGAGAGATGGCAGTTCACTGTGGCGGTATGCTTAGAAGCTGTCATTACATTGATGGCTAATTTGATTAGGTAAACCTATTTTTTGGATTTTAATTTTTAAGAAAATATTTAGGTACTCTATTCGAAATTCTGGACGGGCAGACACCCTATTCATAGTATCATTTGTGCACCTGCAATTGACAGTTTCGGTGAATATTGTGATTATTGTTGCTCCGAAATTCTACCTATCCAATGGAGAGCCCAGCCGACGATCGATGACACTGGGAGGACACTCGGGGCGGGCGCATCCGTCGCTGGCAAAACTCAGAGATAATATTCTGAACGGAACCATTGACTTTGCCGAAGTTCCGATCGTTGACATGAATCCAGAGGATATTCGAGTAAGGAAGTGACCCGATTTCCTGTTTTCTATTGTTTTTATTTTGCAGGCTGAGCTGAAGCGTGTCTACACGCAACTGCGAATGTACAAGTTGAAGAATTTGTATCAAGACAATCCGCACATTTCGAAGAAGCGGGGAGGGAAGAAATGGAGCGATAAGAATACCAAAGCGACGCGACGGATCTCGATACCGTCGTGTTCGCCACAAGCCAAACGGATAGAGGAGGACGAGAAGAGTGATCTGACAGTGGAGTCGTCGCCCCATAACATCTATTTGAGCAATTTCAAAGGAGCAAATGTGAATAACATTGAGCAACACAATTCAGTTCGGGTCTAGAAGCTCACTTATATTTCTTTCTGTGCACTTTTCATTGTTGNNNNNNNNNNNNTTAATTTATAATCAAAATCCTTTTATCGATTTA</canonical>
            <polymorphic>ATCTAGCTGCCATGTTGGCCCTAACCATCACTGGTCTGATGGCTTGGACCGTTGGCTCATGGGGAGACACTGCTCTTTGGAGGACTGCCTGGCCGCAGTGTCTTATGCAGGGATGGCATGTCATTTGGCATGGCTACGAACTGCTATTCCTGCTATATGCAGTCCGTTTGTGTTATAAAGCCAGGAATAGTGACTGGTTGGAGAGATGGCAGTTCACTGTGGCGGTATGCTTAGAAGCTGTCATTACATTGATGGCTAATTTGATTAGGTAAACCTATTTTTTGGATTTTAATTTTTAAGAAAATATTTAGGTACTCTATTCGAAATTCTGGACGGGCAGACACCCTATTCATAGTATCATTTGTGCACCTGCAATTGACAGTTTCGGTGAATATTGTGATTATTGTTGCTCCGAAATTCTACCTATCCAATGGAGAGCCCAGCCGACGATCGATGACACTGGGAGGACACTCGGGGCGGGCGCATCCGTCGCTGGCAAWACTCAGAGATAATATTCTGAACGGAACCATTGACTTTGCCGAAGTTCCGATCGTTGACATGAATCCAGAGGATATTCGAGTAAGGAAGTGACCCGATTTCCTGTTTTCTATTGTTTTTATTTTGCAGGCTGAGCTGAAGCGTGTCTACACGCAACTGCGAATGTACAAGTTGAAGAATTTGTATCAAGACAATCCGCACATTTCGAAGAAGCGGGGAGGGAAGAAATGGAGCGATAAGAATACCAAAGCGACGCGACGGATCTCGATACCGTCGTGTTCGCCACAAGCCAAACGGATAGAGGAGGACGAGAAGAGTGATCTGACAGTGGAGTCGTCGCCCCATAACATCTATTTGAGCAATTTCAAAGGAGCAAATGTGAATAACATTGAGCAACACAATTCAGTTCGGGTCTAGAAGCTCACTTATATTTCTTTCTGTGCACTTTTCATTGTTGNNNNNNNNNNNNTTAATTTATAATCAAAATCCTTTTATCGATTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGACACCCTATTCATAGTATC</pcr_primer_p1>
		<pcr_primer_p2>TTCCTTACTCGAATATCCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCAGACACCCTATTCATAGTATCATTTGTGCACCTGCAATTGACAGTTTCGGTGAATATTGTGATTATTGTTGCTCCGAAATTCTACCTATCCAATGGAGAGCCCAGCCGACGATCGATGACACTGGGAGGACACTCGGGGCGGGCGCATCCGTCGCTGGCAAAACTCAGAGATAATATTCTGAACGGAACCATTGACTTTGCCGAAGTTCCGATCGTTGACATGAATCCAGAGGATATTCGAGTAAGGAA</canonical_amplicon>
		<polymorphic_amplicon>GCAGACACCCTATTCATAGTATCATTTGTGCACCTGCAATTGACAGTTTCGGTGAATATTGTGATTATTGTTGCTCCGAAATTCTACCTATCCAATGGAGAGCCCAGCCGACGATCGATGACACTGGGAGGACACTCGGGGCGGGCGCATCCGTCGCTGGCAAWACTCAGAGATAATATTCTGAACGGAACCATTGACTTTGCCGAAGTTCCGATCGTTGACATGAATCCAGAGGATATTCGAGTAAGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23971</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1236327</contig_pos>
        <strand>+</strand>
        <context>CGCTGGCAWW[A/C]CTCMGAGATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCGATGACACTGGGAGGACACTCGGGGCGGGCGCATCCGTCGCTGGCAAA</left_flank>
        <right_flank>CTCAGAGATAATATTCTGAACGGAACCATTGACTTTGCCGAAGTTCCGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAGCTGCCATGTTGGCCCTAACCATCACTGGTCTGATGGCTTGGACCGTTGGCTCATGGGGAGACACTGCTCTTTGGAGGACTGCCTGGCCGCAGTGTCTTATGCAGGGATGGCATGTCATTTGGCATGGCTACGAACTGCTATTCCTGCTATATGCAGTCCGTTTGTGTTATAAAGCCAGGAATAGTGACTGGTTGGAGAGATGGCAGTTCACTGTGGCGGTATGCTTAGAAGCTGTCATTACATTGATGGCTAATTTGATTAGGTAAACCTATTTTTTGGATTTTAATTTTTAAGAAAATATTTAGGTACTCTATTCGAAATTCTGGACGGGCAGACACCCTATTCATAGTATCATTTGTGCACCTGCAATTGACAGTTTCGGTGAATATTGTGATTATTGTTGCTCCGAAATTCTACCTATCCAATGGAGAGCCCAGCCGACGATCGATGACACTGGGAGGACACTCGGGGCGGGCGCATCCGTCGCTGGCAAAACTCAGAGATAATATTCTGAACGGAACCATTGACTTTGCCGAAGTTCCGATCGTTGACATGAATCCAGAGGATATTCGAGTAAGGAAGTGACCCGATTTCCTGTTTTCTATTGTTTTTATTTTGCAGGCTGAGCTGAAGCGTGTCTACACGCAACTGCGAATGTACAAGTTGAAGAATTTGTATCAAGACAATCCGCACATTTCGAAGAAGCGGGGAGGGAAGAAATGGAGCGATAAGAATACCAAAGCGACGCGACGGATCTCGATACCGTCGTGTTCGCCACAAGCCAAACGGATAGAGGAGGACGAGAAGAGTGATCTGACAGTGGAGTCGTCGCCCCATAACATCTATTTGAGCAATTTCAAAGGAGCAAATGTGAATAACATTGAGCAACACAATTCAGTTCGGGTCTAGAAGCTCACTTATATTTCTTTCTGTGCACTTTTCATTGTTGNNNNNNNNNNNNTTAATTTATAATCAAAATCCTTTTATCGATTTAA</canonical>
            <polymorphic>TCTAGCTGCCATGTTGGCCCTAACCATCACTGGTCTGATGGCTTGGACCGTTGGCTCATGGGGAGACACTGCTCTTTGGAGGACTGCCTGGCCGCAGTGTCTTATGCAGGGATGGCATGTCATTTGGCATGGCTACGAACTGCTATTCCTGCTATATGCAGTCCGTTTGTGTTATAAAGCCAGGAATAGTGACTGGTTGGAGAGATGGCAGTTCACTGTGGCGGTATGCTTAGAAGCTGTCATTACATTGATGGCTAATTTGATTAGGTAAACCTATTTTTTGGATTTTAATTTTTAAGAAAATATTTAGGTACTCTATTCGAAATTCTGGACGGGCAGACACCCTATTCATAGTATCATTTGTGCACCTGCAATTGACAGTTTCGGTGAATATTGTGATTATTGTTGCTCCGAAATTCTACCTATCCAATGGAGAGCCCAGCCGACGATCGATGACACTGGGAGGACACTCGGGGCGGGCGCATCCGTCGCTGGCAAAMCTCAGAGATAATATTCTGAACGGAACCATTGACTTTGCCGAAGTTCCGATCGTTGACATGAATCCAGAGGATATTCGAGTAAGGAAGTGACCCGATTTCCTGTTTTCTATTGTTTTTATTTTGCAGGCTGAGCTGAAGCGTGTCTACACGCAACTGCGAATGTACAAGTTGAAGAATTTGTATCAAGACAATCCGCACATTTCGAAGAAGCGGGGAGGGAAGAAATGGAGCGATAAGAATACCAAAGCGACGCGACGGATCTCGATACCGTCGTGTTCGCCACAAGCCAAACGGATAGAGGAGGACGAGAAGAGTGATCTGACAGTGGAGTCGTCGCCCCATAACATCTATTTGAGCAATTTCAAAGGAGCAAATGTGAATAACATTGAGCAACACAATTCAGTTCGGGTCTAGAAGCTCACTTATATTTCTTTCTGTGCACTTTTCATTGTTGNNNNNNNNNNNNTTAATTTATAATCAAAATCCTTTTATCGATTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGACACCCTATTCATAGTATC</pcr_primer_p1>
		<pcr_primer_p2>TTCCTTACTCGAATATCCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCAGACACCCTATTCATAGTATCATTTGTGCACCTGCAATTGACAGTTTCGGTGAATATTGTGATTATTGTTGCTCCGAAATTCTACCTATCCAATGGAGAGCCCAGCCGACGATCGATGACACTGGGAGGACACTCGGGGCGGGCGCATCCGTCGCTGGCAAAACTCAGAGATAATATTCTGAACGGAACCATTGACTTTGCCGAAGTTCCGATCGTTGACATGAATCCAGAGGATATTCGAGTAAGGAA</canonical_amplicon>
		<polymorphic_amplicon>GCAGACACCCTATTCATAGTATCATTTGTGCACCTGCAATTGACAGTTTCGGTGAATATTGTGATTATTGTTGCTCCGAAATTCTACCTATCCAATGGAGAGCCCAGCCGACGATCGATGACACTGGGAGGACACTCGGGGCGGGCGCATCCGTCGCTGGCAAAMCTCAGAGATAATATTCTGAACGGAACCATTGACTTTGCCGAAGTTCCGATCGTTGACATGAATCCAGAGGATATTCGAGTAAGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23972</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1236331</contig_pos>
        <strand>+</strand>
        <context>GGCAWWMCTC[A/C]GAGATAATAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGACACTGGGAGGACACTCGGGGCGGGCGCATCCGTCGCTGGCAAAACTC</left_flank>
        <right_flank>GAGATAATATTCTGAACGGAACCATTGACTTTGCCGAAGTTCCGATCGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTGCCATGTTGGCCCTAACCATCACTGGTCTGATGGCTTGGACCGTTGGCTCATGGGGAGACACTGCTCTTTGGAGGACTGCCTGGCCGCAGTGTCTTATGCAGGGATGGCATGTCATTTGGCATGGCTACGAACTGCTATTCCTGCTATATGCAGTCCGTTTGTGTTATAAAGCCAGGAATAGTGACTGGTTGGAGAGATGGCAGTTCACTGTGGCGGTATGCTTAGAAGCTGTCATTACATTGATGGCTAATTTGATTAGGTAAACCTATTTTTTGGATTTTAATTTTTAAGAAAATATTTAGGTACTCTATTCGAAATTCTGGACGGGCAGACACCCTATTCATAGTATCATTTGTGCACCTGCAATTGACAGTTTCGGTGAATATTGTGATTATTGTTGCTCCGAAATTCTACCTATCCAATGGAGAGCCCAGCCGACGATCGATGACACTGGGAGGACACTCGGGGCGGGCGCATCCGTCGCTGGCAAAACTCAGAGATAATATTCTGAACGGAACCATTGACTTTGCCGAAGTTCCGATCGTTGACATGAATCCAGAGGATATTCGAGTAAGGAAGTGACCCGATTTCCTGTTTTCTATTGTTTTTATTTTGCAGGCTGAGCTGAAGCGTGTCTACACGCAACTGCGAATGTACAAGTTGAAGAATTTGTATCAAGACAATCCGCACATTTCGAAGAAGCGGGGAGGGAAGAAATGGAGCGATAAGAATACCAAAGCGACGCGACGGATCTCGATACCGTCGTGTTCGCCACAAGCCAAACGGATAGAGGAGGACGAGAAGAGTGATCTGACAGTGGAGTCGTCGCCCCATAACATCTATTTGAGCAATTTCAAAGGAGCAAATGTGAATAACATTGAGCAACACAATTCAGTTCGGGTCTAGAAGCTCACTTATATTTCTTTCTGTGCACTTTTCATTGTTGNNNNNNNNNNNNTTAATTTATAATCAAAATCCTTTTATCGATTTAACGTT</canonical>
            <polymorphic>GCTGCCATGTTGGCCCTAACCATCACTGGTCTGATGGCTTGGACCGTTGGCTCATGGGGAGACACTGCTCTTTGGAGGACTGCCTGGCCGCAGTGTCTTATGCAGGGATGGCATGTCATTTGGCATGGCTACGAACTGCTATTCCTGCTATATGCAGTCCGTTTGTGTTATAAAGCCAGGAATAGTGACTGGTTGGAGAGATGGCAGTTCACTGTGGCGGTATGCTTAGAAGCTGTCATTACATTGATGGCTAATTTGATTAGGTAAACCTATTTTTTGGATTTTAATTTTTAAGAAAATATTTAGGTACTCTATTCGAAATTCTGGACGGGCAGACACCCTATTCATAGTATCATTTGTGCACCTGCAATTGACAGTTTCGGTGAATATTGTGATTATTGTTGCTCCGAAATTCTACCTATCCAATGGAGAGCCCAGCCGACGATCGATGACACTGGGAGGACACTCGGGGCGGGCGCATCCGTCGCTGGCAAAACTCMGAGATAATATTCTGAACGGAACCATTGACTTTGCCGAAGTTCCGATCGTTGACATGAATCCAGAGGATATTCGAGTAAGGAAGTGACCCGATTTCCTGTTTTCTATTGTTTTTATTTTGCAGGCTGAGCTGAAGCGTGTCTACACGCAACTGCGAATGTACAAGTTGAAGAATTTGTATCAAGACAATCCGCACATTTCGAAGAAGCGGGGAGGGAAGAAATGGAGCGATAAGAATACCAAAGCGACGCGACGGATCTCGATACCGTCGTGTTCGCCACAAGCCAAACGGATAGAGGAGGACGAGAAGAGTGATCTGACAGTGGAGTCGTCGCCCCATAACATCTATTTGAGCAATTTCAAAGGAGCAAATGTGAATAACATTGAGCAACACAATTCAGTTCGGGTCTAGAAGCTCACTTATATTTCTTTCTGTGCACTTTTCATTGTTGNNNNNNNNNNNNTTAATTTATAATCAAAATCCTTTTATCGATTTAACGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>376 272 225 127</canonical_bands>
                <polymorphic_bands>399 376 225</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAGACACCCTATTCATAGTATC</pcr_primer_p1>
		<pcr_primer_p2>TTCCTTACTCGAATATCCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCAGACACCCTATTCATAGTATCATTTGTGCACCTGCAATTGACAGTTTCGGTGAATATTGTGATTATTGTTGCTCCGAAATTCTACCTATCCAATGGAGAGCCCAGCCGACGATCGATGACACTGGGAGGACACTCGGGGCGGGCGCATCCGTCGCTGGCAAAACTCAGAGATAATATTCTGAACGGAACCATTGACTTTGCCGAAGTTCCGATCGTTGACATGAATCCAGAGGATATTCGAGTAAGGAA</canonical_amplicon>
		<polymorphic_amplicon>GCAGACACCCTATTCATAGTATCATTTGTGCACCTGCAATTGACAGTTTCGGTGAATATTGTGATTATTGTTGCTCCGAAATTCTACCTATCCAATGGAGAGCCCAGCCGACGATCGATGACACTGGGAGGACACTCGGGGCGGGCGCATCCGTCGCTGGCAAAACTCMGAGATAATATTCTGAACGGAACCATTGACTTTGCCGAAGTTCCGATCGTTGACATGAATCCAGAGGATATTCGAGTAAGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23973</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1261659</contig_pos>
        <strand>+</strand>
        <context>ATCCAAACGC[A/C]CCAAAACCAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGAAGCCAAAGAAAGATAAGGATGCGCCAGAGAGCCAAAATCCAAACGC</left_flank>
        <right_flank>CCAAAACCACCAAAGAATATGGCTCAGATTGCGGCGACTCAAGATCCAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCATGCACCCAATTCAAGGGACTTACCAACGTCAACGTTGACAGCGAGGAATAAGTGTTGTTTCAATAAAATTGTTGTTATCTAAAACTGTGTTCTGTTCTGTATTCAACAAAAAATTAGGTGATGATCATTTACAACATTTTATTATGATCAAAAAGCAAATTCACGTTTACAAAGCAGTTTTCCTTCGAGACATTGCTTGATATCCTCGTAGCTTCCGTTTCTCCATTCGAAGTTCGGTTCTCTGTGCAAATCGTCGAAAGTTTACCGATGCCTGAAATGTCTCTCAAAATTCTTCTGAATCTTCTGCTGATCATTGGTGTCTCAATTCTATTCCTTGTGCAGTGTGGTGGCAAGAAGAAGAGAAAATCCACGGCGTCAGTTAAAAGTGAAAAAAGTGAGGAGGAGTCTGATGATGAGTCTGGAGCTGAGAGGAAAAAGAAGTCGAAGAAGCCAAAGAAAGATAAGGATGCGCCAGAGAGCCAAAATCCAAACGCACCAAAACCACCAAAGAATATGGCTCAGATTGCGGCGACTCAAGATCCAAACTATCAGACATTGGCTGGTCTGAATAACGACGCCGTTTTTGGAGGAGGTGGTGCGGGAGGTGCAGGAGGAGGTGCCGGTCCAAAAGCTCCCCCAGCTGGCACGAAACCTGGAATGGCTGGAACTCAGGATCCTAATTACCAAACATTGGCTGGTTTGAATAATGATGCAGTTTTCGGAGGTGGTGGTGGTGCTGGAGGGGCTCCCAAGGCTCCAGCTGTCGGTGGAAAAGCAGCCACCAACGATCCAAATTATCAGGTAAACGCTTTTTAGACTACAAACTACATTTTTAAAGGGACACGAATTCGAGAAATTTTCGTCATAATTTCTTTTCAAAGGTACACATTGGAAATGGTTGACCTAATTAAAATTCGCGTCGTTTTGCGGCCACGTGGCGCCACGTATTTCGTGTCGAGACCCTCTAGATAAATTGCATGCGCCTTTAATCAGGT</canonical>
            <polymorphic>TTCCATGCACCCAATTCAAGGGACTTACCAACGTCAACGTTGACAGCGAGGAATAAGTGTTGTTTCAATAAAATTGTTGTTATCTAAAACTGTGTTCTGTTCTGTATTCAACAAAAAATTAGGTGATGATCATTTACAACATTTTATTATGATCAAAAAGCAAATTCACGTTTACAAAGCAGTTTTCCTTCGAGACATTGCTTGATATCCTCGTAGCTTCCGTTTCTCCATTCGAAGTTCGGTTCTCTGTGCAAATCGTCGAAAGTTTACCGATGCCTGAAATGTCTCTCAAAATTCTTCTGAATCTTCTGCTGATCATTGGTGTCTCAATTCTATTCCTTGTGCAGTGTGGTGGCAAGAAGAAGAGAAAATCCACGGCGTCAGTTAAAAGTGAAAAAAGTGAGGAGGAGTCTGATGATGAGTCTGGAGCTGAGAGGAAAAAGAAGTCGAAGAAGCCAAAGAAAGATAAGGATGCGCCAGAGAGCCAAAATCCAAACGCMCCAAAACCACCAAAGAATATGGCTCAGATTGCGGCGACTCAAGATCCAAACTATCAGACATTGGCTGGTCTGAATAACGACGCCGTTTTTGGAGGAGGTGGTGCGGGAGGTGCAGGAGGAGGTGCCGGTCCAAAAGCTCCCCCAGCTGGCACGAAACCTGGAATGGCTGGAACTCAGGATCCTAATTACCAAACATTGGCTGGTTTGAATAATGATGCAGTTTTCGGAGGTGGTGGTGGTGCTGGAGGGGCTCCCAAGGCTCCAGCTGTCGGTGGAAAAGCAGCCACCAACGATCCAAATTATCAGGTAAACGCTTTTTAGACTACAAACTACATTTTTAAAGGGACACGAATTCGAGAAATTTTCGTCATAATTTCTTTTCAAAGGTACACATTGGAAATGGTTGACCTAATTAAAATTCGCGTCGTTTTGCGGCCACGTGGCGCCACGTATTTCGTGTCGAGACCCTCTAGATAAATTGCATGCGCCTTTAATCAGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>98 91 83 81 73 62 50 47 43 43 41 35 33 31 27 21 20 18 12 12 11 9 9 9 9 6 5 4 3 3 3 3 3 2</canonical_bands>
                <polymorphic_bands>107 91 83 81 73 62 50 47 43 43 41 35 33 31 27 21 20 18 12 12 11 9 9 9 6 5 4 3 3 3 3 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCATTGGTGTCTCAATTCTAT</pcr_primer_p1>
		<pcr_primer_p2>CAATGTCTGATAGTTTGGATCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCATTGGTGTCTCAATTCTATTCCTTGTGCAGTGTGGTGGCAAGAAGAAGAGAAAATCCACGGCGTCAGTTAAAAGTGAAAAAAGTGAGGAGGAGTCTGATGATGAGTCTGGAGCTGAGAGGAAAAAGAAGTCGAAGAAGCCAAAGAAAGATAAGGATGCGCCAGAGAGCCAAAATCCAAACGCACCAAAACCACCAAAGAATATGGCTCAGATTGCGGCGACTCAAGATCCAAACTATCAGACATTG</canonical_amplicon>
		<polymorphic_amplicon>GATCATTGGTGTCTCAATTCTATTCCTTGTGCAGTGTGGTGGCAAGAAGAAGAGAAAATCCACGGCGTCAGTTAAAAGTGAAAAAAGTGAGGAGGAGTCTGATGATGAGTCTGGAGCTGAGAGGAAAAAGAAGTCGAAGAAGCCAAAGAAAGATAAGGATGCGCCAGAGAGCCAAAATCCAAACGCMCCAAAACCACCAAAGAATATGGCTCAGATTGCGGCGACTCAAGATCCAAACTATCAGACATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23974</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1315173</contig_pos>
        <strand></strand>
        <context>CCCTTTAAAT[T/A]TTAGAATTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TAACACATTTTAATGCAATAAAAATTTTTGGTCCGAGTCCCCCTTTAAAT</left_flank>
        <right_flank>TTAGAATTCCCGGAATATTTTTCACTGAAAACGTACGGAATTTTTTTAAT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTGTTTTTCAAATATTGTTGCAAAAAAATTCAAAGAAAATCCGAAATCCCCGAAAAACGGTTGTTTCCTGGTAATGAGGTGGAGGAGAATGCGGAAAACAAGATGGTTCTGAAGACAACAGGCACCGCTGCGGAATGGATTGAAGAGGAGAATTATATGTTTCGGCTGTGGGAATTCCCAGAAAAAGTGGGCGAATGGATTGAGAAGACGGACGTTGTGTGNNNNNNNNNNNNACGTTTTTTACCTGCCGGACATGAAATTGAAAAAATCCGGAAAATTTGCCACGTAGGAAAGGCGCCCGCTGCCGTGGCCTAGGTTTCTCACTTAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGCCGTTTTTCGGGAAATTCGGATTTTTTTGAATTTTTTCGCAATAATATTCGGAAAATAGATAACTTTTAACACATTTTAATGCAATAAAAATTTTTGGTCCGAGTCCCCCTTTAAATTTTAGAATTCCCGGAATATTTTTCACTGAAAACGTACGGAATTTTTTTAATTTTATGACTGTCTTGAATGGGGACCATCTTTACAGGGGGCCCTTCTATTGTCGAATCAAAAAAAGTGACACCTGAAAACCTCGGAGCCGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAATGGATACTGTAAATAACAAATTTATTTTTGTGAATTTAGTGGAATTTTCTGAACAAATTTTTGATTTCTTTTTATGAAAATGATCGCTAGCATCTCTAGAATCTATTTTCAGCAAAAAAAACTGAGCTTAATTGCGAAAGTAGCTCGAACGAGGCGAAAGTCTGAAATTTTATGTTTTTGCCGCACTTTTTCGTAGATCAAAAAATGCGACGGTTTTCAAATTCTCAGGTGTCACTTTTTTTTAATACGACAATATTACGGGGGCCCTTTTATTTTTCCAAACCCCTCTCGGGGGGGGCCTTCTATTAGAGGGGCCCTTCTAATA</canonical>
            <polymorphic>TATTTGTTTTTCAAATATTGTTGCAAAAAAATTCAAAGAAAATCCGAAATCCCCGAAAAACGGTTGTTTCCTGGTAATGAGGTGGAGGAGAATGCGGAAAACAAGATGGTTCTGAAGACAACAGGCACCGCTGCGGAATGGATTGAAGAGGAGAATTATATGTTTCGGCTGTGGGAATTCCCAGAAAAAGTGGGCGAATGGATTGAGAAGACGGACGTTGTGTGNNNNNNNNNNNNACGTTTTTTACCTGCCGGACATGAAATTGAAAAAATCCGGAAAATTTGCCACGTAGGAAAGGCGCCCGCTGCCGTGGCCTAGGTTTCTCACTTAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGCCGTTTTTCGGGAAATTCGGATTTTTTTGAATTTTTTCGCAATAATATTCGGAAAATAGATAACTTTTAACACATTTTAATGCAATAAAAATTTTTGGTCCGAGTCCCCCTTTAAATWTTAGAATTCCCGGAATATTTTTCACTGAAAACGTACGGAATTTTTTTAATTTTATGACTGTCTTGAATGGGGACCATCTTTACAGGGGGCCCTTCTATTGTCGAATCAAAAAAAGTGACACCTGAAAACCTCGGAGCCGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAATGGATACTGTAAATAACAAATTTATTTTTGTGAATTTAGTGGAATTTTCTGAACAAATTTTTGATTTCTTTTTATGAAAATGATCGCTAGCATCTCTAGAATCTATTTTCAGCAAAAAAAACTGAGCTTAATTGCGAAAGTAGCTCGAACGAGGCGAAAGTCTGAAATTTTATGTTTTTGCCGCACTTTTTCGTAGATCAAAAAATGCGACGGTTTTCAAATTCTCAGGTGTCACTTTTTTTTAATACGACAATATTACGGGGGCCCTTTTATTTTTCCAAACCCCTCTCGGGGGGGGCCTTCTATTAGAGGGGCCCTTCTAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>155 146 110 106 103 84 60 54 34 33 29 25 16 14 13 10 8</canonical_bands>
                <polymorphic_bands>155 146 110 106 103 84 60 54 34 33 33 29 16 14 13 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>146 124 106 85 84 74 60 54 36 34 33 29 25 22 18 16 14 13 10 9 8</canonical_bands>
                <polymorphic_bands>146 124 106 85 84 74 60 54 36 34 33 33 29 22 18 16 14 13 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCTAGGTTTCTCACTTAAAATC</pcr_primer_p1>
		<pcr_primer_p2>TTCAAGACAGTCATAAAATTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>GCCTAGGTTTCTCACTTAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGCCGTTTTTCGGGAAATTCGGATTTTTTTGAATTTTTTCGCAATAATATTCGGAAAATAGATAACTTTTAACACATTTTAATGCAATAAAAATTTTTGGTCCGAGTCCCCCTTTAAATTTTAGAATTCCCGGAATATTTTTCACTGAAAACGTACGGAATTTTTTTAATTTTATGACTGTCTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GCCTAGGTTTCTCACTTAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGCCGTTTTTCGGGAAATTCGGATTTTTTTGAATTTTTTCGCAATAATATTCGGAAAATAGATAACTTTTAACACATTTTAATGCAATAAAAATTTTTGGTCCGAGTCCCCCTTTAAATWTTAGAATTCCCGGAATATTTTTCACTGAAAACGTACGGAATTTTTTTAATTTTATGACTGTCTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23975</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1332941</contig_pos>
        <strand>+</strand>
        <context>CACTTTTCCG[A/C]TTTTTTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CACCCAACAATGCATAATATCACAAGCGTTTTTGCCTCCTCACTTTTCCG</left_flank>
        <right_flank>TTTTTTTTCAACTTTCTCTAGAAAATTTCTTTCGGTCAAAACGAAAATTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATTGTTCATTTAAGACTTTTTGATGTATCTTTAAAGAAATGAAGAGCACTATATTTAGAGATGTGAATCAACTAAAGTGTGCAATATACTATTTTTCGATGGTTTCTCAGAGGAGCAATACTATTGGAGGTGGAACTCAATTAGAGATTTAACCCTTGTAGAAACCAAGCCAATTATCATAAATCTTAGAGTTACATTTTCTTTCATATTATGCTTAATCCCATCCTTCTCTAGAAAGTCAAATCTACTCCGATCCTCCTCCTCCTCCCTCATTTCATCCGGAAATTCGAAAACCCTCCACATATCCGGATATGCTCTCTTTCTCTCTCTCCGATTTCCTCCTCTCTCATCAAAATTGGATCATTGCCAACATTTTCCGTTTTTTTTCTTGTGTGTCTGCATTCGTTGATATATAATAAAATTATATCAATACGGACGGGGTGCGCGCACCCAACAATGCATAATATCACAAGCGTTTTTGCCTCCTCACTTTTCCGTTTTTTTTTCAACTTTCTCTAGAAAATTTCTTTCGGTCAAAACGAAAATTGCTCATGTCCACCCCCTGGTAATACTAGTATTCTCCCAAAAGAGACAATGTTCTTCTTGGGATGCCTCCTTTGCAACACACACCACAAATGGATGGCTTATGAAACTATGAGAAAAACGATGAATTGGCTGCTGGGGAATTGGTGTCCAAAAGAGGGAGGAAAAGAGCACAAGTTTTGCATATCACCCTTTTGCCGTTTTTAGGAGCAAAAGAGAGAGAGAAAGAGAGTAGTATGTCCGCCCCGAGGTCTTTGTGTCTCCCTTCAAAACCGGATAGGGGATAGGGGGAAGAAAAGCTAAAGTGTTTTGTTCTGTATATAGAGAACGGCCTTTTTTTTCTAGGATTCTTTTTTGACTCGCAGGTTTCGTACTTTTTTGGATAATCGTATTGAGAAGACATAATTTCAAATTCTGTGTATATTCACTATTTCTTTTCATTCTTGTTATGCTAT</canonical>
            <polymorphic>CTATTGTTCATTTAAGACTTTTTGATGTATCTTTAAAGAAATGAAGAGCACTATATTTAGAGATGTGAATCAACTAAAGTGTGCAATATACTATTTTTCGATGGTTTCTCAGAGGAGCAATACTATTGGAGGTGGAACTCAATTAGAGATTTAACCCTTGTAGAAACCAAGCCAATTATCATAAATCTTAGAGTTACATTTTCTTTCATATTATGCTTAATCCCATCCTTCTCTAGAAAGTCAAATCTACTCCGATCCTCCTCCTCCTCCCTCATTTCATCCGGAAATTCGAAAACCCTCCACATATCCGGATATGCTCTCTTTCTCTCTCTCCGATTTCCTCCTCTCTCATCAAAATTGGATCATTGCCAACATTTTCCGTTTTTTTTCTTGTGTGTCTGCATTCGTTGATATATAATAAAATTATATCAATACGGACGGGGTGCGCGCACCCAACAATGCATAATATCACAAGCGTTTTTGCCTCCTCACTTTTCCGMTTTTTTTTCAACTTTCTCTAGAAAATTTCTTTCGGTCAAAACGAAAATTGCTCATGTCCACCCCCTGGTAATACTAGTATTCTCCCAAAAGAGACAATGTTCTTCTTGGGATGCCTCCTTTGCAACACACACCACAAATGGATGGCTTATGAAACTATGAGAAAAACGATGAATTGGCTGCTGGGGAATTGGTGTCCAAAAGAGGGAGGAAAAGAGCACAAGTTTTGCATATCACCCTTTTGCCGTTTTTAGGAGCAAAAGAGAGAGAGAAAGAGAGTAGTATGTCCGCCCCGAGGTCTTTGTGTCTCCCTTCAAAACCGGATAGGGGATAGGGGGAAGAAAAGCTAAAGTGTTTTGTTCTGTATATAGAGAACGGCCTTTTTTTTCTAGGATTCTTTTTTGACTCGCAGGTTTCGTACTTTTTTGGATAATCGTATTGAGAAGACATAATTTCAAATTCTGTGTATATTCACTATTTCTTTTCATTCTTGTTATGCTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCATCAAAATTGGATCATTG</pcr_primer_p1>
		<pcr_primer_p2>TTGTCTCTTTTGGGAGAATACTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCATCAAAATTGGATCATTGCCAACATTTTCCGTTTTTTTTCTTGTGTGTCTGCATTCGTTGATATATAATAAAATTATATCAATACGGACGGGGTGCGCGCACCCAACAATGCATAATATCACAAGCGTTTTTGCCTCCTCACTTTTCCGTTTTTTTTTCAACTTTCTCTAGAAAATTTCTTTCGGTCAAAACGAAAATTGCTCATGTCCACCCCCTGGTAATACTAGTATTCTCCCAAAAGAGACAA</canonical_amplicon>
		<polymorphic_amplicon>CTCATCAAAATTGGATCATTGCCAACATTTTCCGTTTTTTTTCTTGTGTGTCTGCATTCGTTGATATATAATAAAATTATATCAATACGGACGGGGTGCGCGCACCCAACAATGCATAATATCACAAGCGTTTTTGCCTCCTCACTTTTCCGMTTTTTTTTCAACTTTCTCTAGAAAATTTCTTTCGGTCAAAACGAAAATTGCTCATGTCCACCCCCTGGTAATACTAGTATTCTCCCAAAAGAGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23976</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1385442</contig_pos>
        <strand></strand>
        <context>cacaatttat[A/C]agttagcagg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAATGTGTCAGCTGATAAAACGTTGATGATTTCATGATACACAATTTAT</left_flank>
        <right_flank>AGTTAGCAGGATTTAGTTATCTCTTTTAGAAATTGAGTTTAAAGAGCAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTCTTCCTGAAACGACGCTTTCTCCTCAATCACAGTCGCTGCGGCAGCAGCCTTTCTCTCCTTCACAGTTTGCCGTTTGCCTCGAATCGTCGCCTGTCTCACTAGACTTCCTTTATGAAGAATTTCTCGTTTCGCCTGTTCCAACTCATCAAACCACAGTGTTCGGATTCTGGCGCTTTCACAGAGATAGCATCGGGATTCGGGGAAAATGAGAAGTTTCAGCACTTTTCCAGCGTTCGCTGCTCCGGACTCTCGATCTTTGACGTTCACAGGAGCCACAGAGTTCAAGGAGAGTGTGGATTCCATACTGAAGATTTACAAAATTGTTAAATGGTTTTCTTTGTCTGATATCTTTCATAAAAGGAATTACCGTAAAACCTTTAGTAGAAACCCCCACCCACTCTGTCAATTTTGAGCTCCACTATCTCGGTTCCTATGCAAGATATCAAAAATGTGTCAGCTGATAAAACGTTGATGATTTCATGATACACAATTTATAAGTTAGCAGGATTTAGTTATCTCTTTTAGAAATTGAGTTTAAAGAGCAAATCTAGGGAGGCTATCTATTGAAGTGTGTGTTAATGATGAAAGGAATGACATTTCTGACTTCTAAAAATTCAACTTACACAAATTTTCCTGCTGCATTTATATTTCCAATGATCAGTCTATGCGACAACAGTATCAGCATACACTTTTGCACTGGTTTCTTCGTCTCCACATCGAATTGCTCCATTTCCCCATGCAGAATCACTTTCTCCGACGTCGACATGTTATTCAGAATGCCCCCAATTCCTTCCATTTTTTGCATCAAAATCTGAATTGGATTCGTGTTGGAAGTCGTTGTAGAATGAGAGGAGACAGTGTGAATCGAGTTTTTATCATCGTCAGTCATCAGTAGAAGATTCTCGATCACCTGCTTTTGCTCTATTAGGGAATGTGTCAGCTGGTAGATTTCTCGCTCCAAATCTTACAAATTTAGGTTGAAAATTAGAAAAATTC</canonical>
            <polymorphic>CCTCTTCCTGAAACGACGCTTTCTCCTCAATCACAGTCGCTGCGGCAGCAGCCTTTCTCTCCTTCACAGTTTGCCGTTTGCCTCGAATCGTCGCCTGTCTCACTAGACTTCCTTTATGAAGAATTTCTCGTTTCGCCTGTTCCAACTCATCAAACCACAGTGTTCGGATTCTGGCGCTTTCACAGAGATAGCATCGGGATTCGGGGAAAATGAGAAGTTTCAGCACTTTTCCAGCGTTCGCTGCTCCGGACTCTCGATCTTTGACGTTCACAGGAGCCACAGAGTTCAAGGAGAGTGTGGATTCCATACTGAAGATTTACAAAATTGTTAAATGGTTTTCTTTGTCTGATATCTTTCATAAAAGGAATTACCGTAAAACCTTTAGTAGAAACCCCCACCCACTCTGTCAATTTTGAGCTCCACTATCTCGGTTCCTATGCAAGATATCAAAAATGTGTCAGCTGATAAAACGTTGATGATTTCATGATACACAATTTATMAGTTAGCAGGATTTAGTTATCTCTTTTAGAAATTGAGTTTAAAGAGCAAATCTAGGGAGGCTATCTATTGAAGTGTGTGTTAATGATGAAAGGAATGACATTTCTGACTTCTAAAAATTCAACTTACACAAATTTTCCTGCTGCATTTATATTTCCAATGATCAGTCTATGCGACAACAGTATCAGCATACACTTTTGCACTGGTTTCTTCGTCTCCACATCGAATTGCTCCATTTCCCCATGCAGAATCACTTTCTCCGACGTCGACATGTTATTCAGAATGCCCCCAATTCCTTCCATTTTTTGCATCAAAATCTGAATTGGATTCGTGTTGGAAGTCGTTGTAGAATGAGAGGAGACAGTGTGAATCGAGTTTTTATCATCGTCAGTCATCAGTAGAAGATTCTCGATCACCTGCTTTTGCTCTATTAGGGAATGTGTCAGCTGGTAGATTTCTCGCTCCAAATCTTACAAATTTAGGTTGAAAATTAGAAAAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAATTGTTAAATGGTTTTCTT</pcr_primer_p1>
		<pcr_primer_p2>AATAGATAGCCTCCCTAGATTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAATTGTTAAATGGTTTTCTTTGTCTGATATCTTTCATAAAAGGAATTACCGTAAAACCTTTAGTAGAAACCCCCACCCACTCTGTCAATTTTGAGCTCCACTATCTCGGTTCCTATGCAAGATATCAAAAATGTGTCAGCTGATAAAACGTTGATGATTTCATGATACACAATTTATAAGTTAGCAGGATTTAGTTATCTCTTTTAGAAATTGAGTTTAAAGAGCAAATCTAGGGAGGCTATCTATT</canonical_amplicon>
		<polymorphic_amplicon>CAAAATTGTTAAATGGTTTTCTTTGTCTGATATCTTTCATAAAAGGAATTACCGTAAAACCTTTAGTAGAAACCCCCACCCACTCTGTCAATTTTGAGCTCCACTATCTCGGTTCCTATGCAAGATATCAAAAATGTGTCAGCTGATAAAACGTTGATGATTTCATGATACACAATTTATMAGTTAGCAGGATTTAGTTATCTCTTTTAGAAATTGAGTTTAAAGAGCAAATCTAGGGAGGCTATCTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23977</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1393813</contig_pos>
        <strand>+</strand>
        <context>GAGAGATTCC[G/T]WGTGTGAACG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAATCGTTTTGAAAATTTCCATTTTGTTTTCGATTTTTTGAGAGATTCC</left_flank>
        <right_flank>AGTGTGAACGGATCACTATTTGGAGTACGGTAGATGAGAATGAATAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATGGCGCTGGATTTGAATAAGGTACATTTGAATTTAGATTTTTGGAAAATTCTTGAATCCTTTTGTGGTTTTTCAATTTTTTCGAAAATTTTCTAATTTCAAAAAGGCTCCGGGACGCTTTAAAACCCGACGTTTCGGAACCACTACGTTTCAGAACTCGAAATTTCAGAACCTGACAGTTCAGACCCCGACGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTATAATGGTTTTTGCACCCCAAATGAGCGTTTCTCATTTCAATTTTTCAATTTGTGCTTTTTTGCTTTTTTATTCGTTCTCATCTACCGTACTCGAAATATTGATACGTTCACACTCGGAATCTCTCAAAAAAACGAAAAAAATGAAATTTTCAAAAGATGTCTAGAAGTACGCAAAAATGAGTCCCATGATCGCCGGAAAAAATTTTTGCCTACTTCTAGAAATCGTTTTGAAAATTTCCATTTTGTTTTCGATTTTTTGAGAGATTCCGAGTGTGAACGGATCACTATTTGGAGTACGGTAGATGAGAATGAATAAAAAAGCAGAAAAGCACAAAATTGAAATGAGCAATGCTCATTTGGCATGCAAAAAATAACCACTATAAAAAGGATGCAGAAAATTCCGAAACTTCGGGTTCTGAAACGTCCCGGAGCCGAAAATTTTCTAATTTAAAAAGTTCTATTATCTCCATTCCAGGCCTACGATGATGGAAACTTCCTGGCTCACTGTGAACAGGAGTTGAGAAATGAGTCAGGAGAGAAGGAAGACGGAGAATCCGACTCTGACTCAGAAGAAGAAGAAGATCTGGAAGCCATTCACGAGGAGGAAGAAGAAGAGAAGGACCATGAAGAAGTGAAAGCACAGGTGCAGGCTGTCAAACAACAGAAGATCGTGCTCTCCCAATCGACACGCTTCAACGATTGGCTGTCAGACGCCACGAATCTGTTGGAGAACGTGGATTTGAAGGCGTTGAAGACAGAAGAAGGATAT</canonical>
            <polymorphic>AAATGGCGCTGGATTTGAATAAGGTACATTTGAATTTAGATTTTTGGAAAATTCTTGAATCCTTTTGTGGTTTTTCAATTTTTTCGAAAATTTTCTAATTTCAAAAAGGCTCCGGGACGCTTTAAAACCCGACGTTTCGGAACCACTACGTTTCAGAACTCGAAATTTCAGAACCTGACAGTTCAGACCCCGACGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTATAATGGTTTTTGCACCCCAAATGAGCGTTTCTCATTTCAATTTTTCAATTTGTGCTTTTTTGCTTTTTTATTCGTTCTCATCTACCGTACTCGAAATATTGATACGTTCACACTCGGAATCTCTCAAAAAAACGAAAAAAATGAAATTTTCAAAAGATGTCTAGAAGTACGCAAAAATGAGTCCCATGATCGCCGGAAAAAATTTTTGCCTACTTCTAGAAATCGTTTTGAAAATTTCCATTTTGTTTTCGATTTTTTGAGAGATTCCKAGTGTGAACGGATCACTATTTGGAGTACGGTAGATGAGAATGAATAAAAAAGCAGAAAAGCACAAAATTGAAATGAGCAATGCTCATTTGGCATGCAAAAAATAACCACTATAAAAAGGATGCAGAAAATTCCGAAACTTCGGGTTCTGAAACGTCCCGGAGCCGAAAATTTTCTAATTTAAAAAGTTCTATTATCTCCATTCCAGGCCTACGATGATGGAAACTTCCTGGCTCACTGTGAACAGGAGTTGAGAAATGAGTCAGGAGAGAAGGAAGACGGAGAATCCGACTCTGACTCAGAAGAAGAAGAAGATCTGGAAGCCATTCACGAGGAGGAAGAAGAAGAGAAGGACCATGAAGAAGTGAAAGCACAGGTGCAGGCTGTCAAACAACAGAAGATCGTGCTCTCCCAATCGACACGCTTCAACGATTGGCTGTCAGACGCCACGAATCTGTTGGAGAACGTGGATTTGAAGGCGTTGAAGACAGAAGAAGGATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>152 141 139 139 134 132 60 16 15 15 15 15 15 6 6</canonical_bands>
                <polymorphic_bands>286 141 139 139 132 60 16 15 15 15 15 15 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTACTTCTAGAAATCGTTTTGA</pcr_primer_p1>
		<pcr_primer_p2>CCTGGAATGGAGATAATAGAACT</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>CCTACTTCTAGAAATCGTTTTGAAAATTTCCATTTTGTTTTCGATTTTTTGAGAGATTCCGAGTGTGAACGGATCACTATTTGGAGTACGGTAGATGAGAATGAATAAAAAAGCAGAAAAGCACAAAATTGAAATGAGCAATGCTCATTTGGCATGCAAAAAATAACCACTATAAAAAGGATGCAGAAAATTCCGAAACTTCGGGTTCTGAAACGTCCCGGAGCCGAAAATTTTCTAATTTAAAAAGTTCTATTATCTCCATTCCAGG</canonical_amplicon>
		<polymorphic_amplicon>CCTACTTCTAGAAATCGTTTTGAAAATTTCCATTTTGTTTTCGATTTTTTGAGAGATTCCKAGTGTGAACGGATCACTATTTGGAGTACGGTAGATGAGAATGAATAAAAAAGCAGAAAAGCACAAAATTGAAATGAGCAATGCTCATTTGGCATGCAAAAAATAACCACTATAAAAAGGATGCAGAAAATTCCGAAACTTCGGGTTCTGAAACGTCCCGGAGCCGAAAATTTTCTAATTTAAAAAGTTCTATTATCTCCATTCCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23978</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1393814</contig_pos>
        <strand>+</strand>
        <context>AGAGATTCCK[A/T]GTGTGAACGK</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATCGTTTTGAAAATTTCCATTTTGTTTTCGATTTTTTGAGAGATTCCG</left_flank>
        <right_flank>GTGTGAACGGATCACTATTTGGAGTACGGTAGATGAGAATGAATAAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGGCGCTGGATTTGAATAAGGTACATTTGAATTTAGATTTTTGGAAAATTCTTGAATCCTTTTGTGGTTTTTCAATTTTTTCGAAAATTTTCTAATTTCAAAAAGGCTCCGGGACGCTTTAAAACCCGACGTTTCGGAACCACTACGTTTCAGAACTCGAAATTTCAGAACCTGACAGTTCAGACCCCGACGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTATAATGGTTTTTGCACCCCAAATGAGCGTTTCTCATTTCAATTTTTCAATTTGTGCTTTTTTGCTTTTTTATTCGTTCTCATCTACCGTACTCGAAATATTGATACGTTCACACTCGGAATCTCTCAAAAAAACGAAAAAAATGAAATTTTCAAAAGATGTCTAGAAGTACGCAAAAATGAGTCCCATGATCGCCGGAAAAAATTTTTGCCTACTTCTAGAAATCGTTTTGAAAATTTCCATTTTGTTTTCGATTTTTTGAGAGATTCCGAGTGTGAACGGATCACTATTTGGAGTACGGTAGATGAGAATGAATAAAAAAGCAGAAAAGCACAAAATTGAAATGAGCAATGCTCATTTGGCATGCAAAAAATAACCACTATAAAAAGGATGCAGAAAATTCCGAAACTTCGGGTTCTGAAACGTCCCGGAGCCGAAAATTTTCTAATTTAAAAAGTTCTATTATCTCCATTCCAGGCCTACGATGATGGAAACTTCCTGGCTCACTGTGAACAGGAGTTGAGAAATGAGTCAGGAGAGAAGGAAGACGGAGAATCCGACTCTGACTCAGAAGAAGAAGAAGATCTGGAAGCCATTCACGAGGAGGAAGAAGAAGAGAAGGACCATGAAGAAGTGAAAGCACAGGTGCAGGCTGTCAAACAACAGAAGATCGTGCTCTCCCAATCGACACGCTTCAACGATTGGCTGTCAGACGCCACGAATCTGTTGGAGAACGTGGATTTGAAGGCGTTGAAGACAGAAGAAGGATATG</canonical>
            <polymorphic>AATGGCGCTGGATTTGAATAAGGTACATTTGAATTTAGATTTTTGGAAAATTCTTGAATCCTTTTGTGGTTTTTCAATTTTTTCGAAAATTTTCTAATTTCAAAAAGGCTCCGGGACGCTTTAAAACCCGACGTTTCGGAACCACTACGTTTCAGAACTCGAAATTTCAGAACCTGACAGTTCAGACCCCGACGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTATAATGGTTTTTGCACCCCAAATGAGCGTTTCTCATTTCAATTTTTCAATTTGTGCTTTTTTGCTTTTTTATTCGTTCTCATCTACCGTACTCGAAATATTGATACGTTCACACTCGGAATCTCTCAAAAAAACGAAAAAAATGAAATTTTCAAAAGATGTCTAGAAGTACGCAAAAATGAGTCCCATGATCGCCGGAAAAAATTTTTGCCTACTTCTAGAAATCGTTTTGAAAATTTCCATTTTGTTTTCGATTTTTTGAGAGATTCCGWGTGTGAACGGATCACTATTTGGAGTACGGTAGATGAGAATGAATAAAAAAGCAGAAAAGCACAAAATTGAAATGAGCAATGCTCATTTGGCATGCAAAAAATAACCACTATAAAAAGGATGCAGAAAATTCCGAAACTTCGGGTTCTGAAACGTCCCGGAGCCGAAAATTTTCTAATTTAAAAAGTTCTATTATCTCCATTCCAGGCCTACGATGATGGAAACTTCCTGGCTCACTGTGAACAGGAGTTGAGAAATGAGTCAGGAGAGAAGGAAGACGGAGAATCCGACTCTGACTCAGAAGAAGAAGAAGATCTGGAAGCCATTCACGAGGAGGAAGAAGAAGAGAAGGACCATGAAGAAGTGAAAGCACAGGTGCAGGCTGTCAAACAACAGAAGATCGTGCTCTCCCAATCGACACGCTTCAACGATTGGCTGTCAGACGCCACGAATCTGTTGGAGAACGTGGATTTGAAGGCGTTGAAGACAGAAGAAGGATATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>152 141 139 138 134 132 61 16 15 15 15 15 15 6 6</canonical_bands>
                <polymorphic_bands>286 141 139 138 132 61 16 15 15 15 15 15 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTACTTCTAGAAATCGTTTTGA</pcr_primer_p1>
		<pcr_primer_p2>CCTGGAATGGAGATAATAGAACT</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>CCTACTTCTAGAAATCGTTTTGAAAATTTCCATTTTGTTTTCGATTTTTTGAGAGATTCCGAGTGTGAACGGATCACTATTTGGAGTACGGTAGATGAGAATGAATAAAAAAGCAGAAAAGCACAAAATTGAAATGAGCAATGCTCATTTGGCATGCAAAAAATAACCACTATAAAAAGGATGCAGAAAATTCCGAAACTTCGGGTTCTGAAACGTCCCGGAGCCGAAAATTTTCTAATTTAAAAAGTTCTATTATCTCCATTCCAGG</canonical_amplicon>
		<polymorphic_amplicon>CCTACTTCTAGAAATCGTTTTGAAAATTTCCATTTTGTTTTCGATTTTTTGAGAGATTCCGWGTGTGAACGGATCACTATTTGGAGTACGGTAGATGAGAATGAATAAAAAAGCAGAAAAGCACAAAATTGAAATGAGCAATGCTCATTTGGCATGCAAAAAATAACCACTATAAAAAGGATGCAGAAAATTCCGAAACTTCGGGTTCTGAAACGTCCCGGAGCCGAAAATTTTCTAATTTAAAAAGTTCTATTATCTCCATTCCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23979</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1393824</contig_pos>
        <strand>+</strand>
        <context>WGTGTGAACG[G/T]ATCACTAttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAAATTTCCATTTTGTTTTCGATTTTTTGAGAGATTCCGAGTGTGAACG</left_flank>
        <right_flank>ATCACTATTTGGAGTACGGTAGATGAGAATGAATAAAAAAGCAGAAAAGC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTGAATAAGGTACATTTGAATTTAGATTTTTGGAAAATTCTTGAATCCTTTTGTGGTTTTTCAATTTTTTCGAAAATTTTCTAATTTCAAAAAGGCTCCGGGACGCTTTAAAACCCGACGTTTCGGAACCACTACGTTTCAGAACTCGAAATTTCAGAACCTGACAGTTCAGACCCCGACGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTATAATGGTTTTTGCACCCCAAATGAGCGTTTCTCATTTCAATTTTTCAATTTGTGCTTTTTTGCTTTTTTATTCGTTCTCATCTACCGTACTCGAAATATTGATACGTTCACACTCGGAATCTCTCAAAAAAACGAAAAAAATGAAATTTTCAAAAGATGTCTAGAAGTACGCAAAAATGAGTCCCATGATCGCCGGAAAAAATTTTTGCCTACTTCTAGAAATCGTTTTGAAAATTTCCATTTTGTTTTCGATTTTTTGAGAGATTCCGAGTGTGAACGGATCACTATTTGGAGTACGGTAGATGAGAATGAATAAAAAAGCAGAAAAGCACAAAATTGAAATGAGCAATGCTCATTTGGCATGCAAAAAATAACCACTATAAAAAGGATGCAGAAAATTCCGAAACTTCGGGTTCTGAAACGTCCCGGAGCCGAAAATTTTCTAATTTAAAAAGTTCTATTATCTCCATTCCAGGCCTACGATGATGGAAACTTCCTGGCTCACTGTGAACAGGAGTTGAGAAATGAGTCAGGAGAGAAGGAAGACGGAGAATCCGACTCTGACTCAGAAGAAGAAGAAGATCTGGAAGCCATTCACGAGGAGGAAGAAGAAGAGAAGGACCATGAAGAAGTGAAAGCACAGGTGCAGGCTGTCAAACAACAGAAGATCGTGCTCTCCCAATCGACACGCTTCAACGATTGGCTGTCAGACGCCACGAATCTGTTGGAGAACGTGGATTTGAAGGCGTTGAAGACAGAAGAAGGATATGATGATAGTGA</canonical>
            <polymorphic>GATTTGAATAAGGTACATTTGAATTTAGATTTTTGGAAAATTCTTGAATCCTTTTGTGGTTTTTCAATTTTTTCGAAAATTTTCTAATTTCAAAAAGGCTCCGGGACGCTTTAAAACCCGACGTTTCGGAACCACTACGTTTCAGAACTCGAAATTTCAGAACCTGACAGTTCAGACCCCGACGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTATAATGGTTTTTGCACCCCAAATGAGCGTTTCTCATTTCAATTTTTCAATTTGTGCTTTTTTGCTTTTTTATTCGTTCTCATCTACCGTACTCGAAATATTGATACGTTCACACTCGGAATCTCTCAAAAAAACGAAAAAAATGAAATTTTCAAAAGATGTCTAGAAGTACGCAAAAATGAGTCCCATGATCGCCGGAAAAAATTTTTGCCTACTTCTAGAAATCGTTTTGAAAATTTCCATTTTGTTTTCGATTTTTTGAGAGATTCCGAGTGTGAACGKATCACTATTTGGAGTACGGTAGATGAGAATGAATAAAAAAGCAGAAAAGCACAAAATTGAAATGAGCAATGCTCATTTGGCATGCAAAAAATAACCACTATAAAAAGGATGCAGAAAATTCCGAAACTTCGGGTTCTGAAACGTCCCGGAGCCGAAAATTTTCTAATTTAAAAAGTTCTATTATCTCCATTCCAGGCCTACGATGATGGAAACTTCCTGGCTCACTGTGAACAGGAGTTGAGAAATGAGTCAGGAGAGAAGGAAGACGGAGAATCCGACTCTGACTCAGAAGAAGAAGAAGATCTGGAAGCCATTCACGAGGAGGAAGAAGAAGAGAAGGACCATGAAGAAGTGAAAGCACAGGTGCAGGCTGTCAAACAACAGAAGATCGTGCTCTCCCAATCGACACGCTTCAACGATTGGCTGTCAGACGCCACGAATCTGTTGGAGAACGTGGATTTGAAGGCGTTGAAGACAGAAGAAGGATATGATGATAGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>407 301 114 92 86</canonical_bands>
                <polymorphic_bands>407 393 114 86</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAAATTTCCATTTTGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CCTGGAATGGAGATAATAGAACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGAAAATTTCCATTTTGTTTTCGATTTTTTGAGAGATTCCGAGTGTGAACGGATCACTATTTGGAGTACGGTAGATGAGAATGAATAAAAAAGCAGAAAAGCACAAAATTGAAATGAGCAATGCTCATTTGGCATGCAAAAAATAACCACTATAAAAAGGATGCAGAAAATTCCGAAACTTCGGGTTCTGAAACGTCCCGGAGCCGAAAATTTTCTAATTTAAAAAGTTCTATTATCTCCATTCCAGG</canonical_amplicon>
		<polymorphic_amplicon>TGAAAATTTCCATTTTGTTTTCGATTTTTTGAGAGATTCCGAGTGTGAACGKATCACTATTTGGAGTACGGTAGATGAGAATGAATAAAAAAGCAGAAAAGCACAAAATTGAAATGAGCAATGCTCATTTGGCATGCAAAAAATAACCACTATAAAAAGGATGCAGAAAATTCCGAAACTTCGGGTTCTGAAACGTCCCGGAGCCGAAAATTTTCTAATTTAAAAAGTTCTATTATCTCCATTCCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23980</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1393857</contig_pos>
        <strand></strand>
        <context>atgagaatga[A/T]taaaaaagca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATTCCGAGTGTGAACGGATCACTATTTGGAGTACGGTAGATGAGAATGA</left_flank>
        <right_flank>TAAAAAAGCAGAAAAGCACAAAATTGAAATGAGCAATGCTCATTTGGCAT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAAAATTCTTGAATCCTTTTGTGGTTTTTCAATTTTTTCGAAAATTTTCTAATTTCAAAAAGGCTCCGGGACGCTTTAAAACCCGACGTTTCGGAACCACTACGTTTCAGAACTCGAAATTTCAGAACCTGACAGTTCAGACCCCGACGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTATAATGGTTTTTGCACCCCAAATGAGCGTTTCTCATTTCAATTTTTCAATTTGTGCTTTTTTGCTTTTTTATTCGTTCTCATCTACCGTACTCGAAATATTGATACGTTCACACTCGGAATCTCTCAAAAAAACGAAAAAAATGAAATTTTCAAAAGATGTCTAGAAGTACGCAAAAATGAGTCCCATGATCGCCGGAAAAAATTTTTGCCTACTTCTAGAAATCGTTTTGAAAATTTCCATTTTGTTTTCGATTTTTTGAGAGATTCCGAGTGTGAACGGATCACTATTTGGAGTACGGTAGATGAGAATGAATAAAAAAGCAGAAAAGCACAAAATTGAAATGAGCAATGCTCATTTGGCATGCAAAAAATAACCACTATAAAAAGGATGCAGAAAATTCCGAAACTTCGGGTTCTGAAACGTCCCGGAGCCGAAAATTTTCTAATTTAAAAAGTTCTATTATCTCCATTCCAGGCCTACGATGATGGAAACTTCCTGGCTCACTGTGAACAGGAGTTGAGAAATGAGTCAGGAGAGAAGGAAGACGGAGAATCCGACTCTGACTCAGAAGAAGAAGAAGATCTGGAAGCCATTCACGAGGAGGAAGAAGAAGAGAAGGACCATGAAGAAGTGAAAGCACAGGTGCAGGCTGTCAAACAACAGAAGATCGTGCTCTCCCAATCGACACGCTTCAACGATTGGCTGTCAGACGCCACGAATCTGTTGGAGAACGTGGATTTGAAGGCGTTGAAGACAGAAGAAGGATATGATGATAGTGATTTGCCGGAGAAGATTGTAAGGGGTTTCAAAAC</canonical>
            <polymorphic>TGGAAAATTCTTGAATCCTTTTGTGGTTTTTCAATTTTTTCGAAAATTTTCTAATTTCAAAAAGGCTCCGGGACGCTTTAAAACCCGACGTTTCGGAACCACTACGTTTCAGAACTCGAAATTTCAGAACCTGACAGTTCAGACCCCGACGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTATAATGGTTTTTGCACCCCAAATGAGCGTTTCTCATTTCAATTTTTCAATTTGTGCTTTTTTGCTTTTTTATTCGTTCTCATCTACCGTACTCGAAATATTGATACGTTCACACTCGGAATCTCTCAAAAAAACGAAAAAAATGAAATTTTCAAAAGATGTCTAGAAGTACGCAAAAATGAGTCCCATGATCGCCGGAAAAAATTTTTGCCTACTTCTAGAAATCGTTTTGAAAATTTCCATTTTGTTTTCGATTTTTTGAGAGATTCCGAGTGTGAACGGATCACTATTTGGAGTACGGTAGATGAGAATGAWTAAAAAAGCAGAAAAGCACAAAATTGAAATGAGCAATGCTCATTTGGCATGCAAAAAATAACCACTATAAAAAGGATGCAGAAAATTCCGAAACTTCGGGTTCTGAAACGTCCCGGAGCCGAAAATTTTCTAATTTAAAAAGTTCTATTATCTCCATTCCAGGCCTACGATGATGGAAACTTCCTGGCTCACTGTGAACAGGAGTTGAGAAATGAGTCAGGAGAGAAGGAAGACGGAGAATCCGACTCTGACTCAGAAGAAGAAGAAGATCTGGAAGCCATTCACGAGGAGGAAGAAGAAGAGAAGGACCATGAAGAAGTGAAAGCACAGGTGCAGGCTGTCAAACAACAGAAGATCGTGCTCTCCCAATCGACACGCTTCAACGATTGGCTGTCAGACGCCACGAATCTGTTGGAGAACGTGGATTTGAAGGCGTTGAAGACAGAAGAAGGATATGATGATAGTGATTTGCCGGAGAAGATTGTAAGGGGTTTCAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAATTTCCATTTTGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CCTGGAATGGAGATAATAGAACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGAAAATTTCCATTTTGTTTTCGATTTTTTGAGAGATTCCGAGTGTGAACGGATCACTATTTGGAGTACGGTAGATGAGAATGAATAAAAAAGCAGAAAAGCACAAAATTGAAATGAGCAATGCTCATTTGGCATGCAAAAAATAACCACTATAAAAAGGATGCAGAAAATTCCGAAACTTCGGGTTCTGAAACGTCCCGGAGCCGAAAATTTTCTAATTTAAAAAGTTCTATTATCTCCATTCCAGG</canonical_amplicon>
		<polymorphic_amplicon>TGAAAATTTCCATTTTGTTTTCGATTTTTTGAGAGATTCCGAGTGTGAACGGATCACTATTTGGAGTACGGTAGATGAGAATGAWTAAAAAAGCAGAAAAGCACAAAATTGAAATGAGCAATGCTCATTTGGCATGCAAAAAATAACCACTATAAAAAGGATGCAGAAAATTCCGAAACTTCGGGTTCTGAAACGTCCCGGAGCCGAAAATTTTCTAATTTAAAAAGTTCTATTATCTCCATTCCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23981</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1393926</contig_pos>
        <strand>+</strand>
        <context>TAACCACTAT[A/G]AAAAGGATGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAAATTGAAATGAGCAATGCTCATTTGGCATGCAAAAAATAACCACTAT</left_flank>
        <right_flank>AAAAGGATGCAGAAAATTCCGAAACTTCGGGTTCTGAAACGTCCCGGAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGACGCTTTAAAACCCGACGTTTCGGAACCACTACGTTTCAGAACTCGAAATTTCAGAACCTGACAGTTCAGACCCCGACGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTATAATGGTTTTTGCACCCCAAATGAGCGTTTCTCATTTCAATTTTTCAATTTGTGCTTTTTTGCTTTTTTATTCGTTCTCATCTACCGTACTCGAAATATTGATACGTTCACACTCGGAATCTCTCAAAAAAACGAAAAAAATGAAATTTTCAAAAGATGTCTAGAAGTACGCAAAAATGAGTCCCATGATCGCCGGAAAAAATTTTTGCCTACTTCTAGAAATCGTTTTGAAAATTTCCATTTTGTTTTCGATTTTTTGAGAGATTCCGAGTGTGAACGGATCACTATTTGGAGTACGGTAGATGAGAATGAATAAAAAAGCAGAAAAGCACAAAATTGAAATGAGCAATGCTCATTTGGCATGCAAAAAATAACCACTATAAAAAGGATGCAGAAAATTCCGAAACTTCGGGTTCTGAAACGTCCCGGAGCCGAAAATTTTCTAATTTAAAAAGTTCTATTATCTCCATTCCAGGCCTACGATGATGGAAACTTCCTGGCTCACTGTGAACAGGAGTTGAGAAATGAGTCAGGAGAGAAGGAAGACGGAGAATCCGACTCTGACTCAGAAGAAGAAGAAGATCTGGAAGCCATTCACGAGGAGGAAGAAGAAGAGAAGGACCATGAAGAAGTGAAAGCACAGGTGCAGGCTGTCAAACAACAGAAGATCGTGCTCTCCCAATCGACACGCTTCAACGATTGGCTGTCAGACGCCACGAATCTGTTGGAGAACGTGGATTTGAAGGCGTTGAAGACAGAAGAAGGATATGATGATAGTGATTTGCCGGAGAAGATTGTAAGGGGTTTCAAAACATTTTAATTTCAAAACATCTGAAATTCCAGACTCATCCCCATGGCGTTGTCGCTGCTTCAGATTCCTCC</canonical>
            <polymorphic>GGGACGCTTTAAAACCCGACGTTTCGGAACCACTACGTTTCAGAACTCGAAATTTCAGAACCTGACAGTTCAGACCCCGACGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTATAATGGTTTTTGCACCCCAAATGAGCGTTTCTCATTTCAATTTTTCAATTTGTGCTTTTTTGCTTTTTTATTCGTTCTCATCTACCGTACTCGAAATATTGATACGTTCACACTCGGAATCTCTCAAAAAAACGAAAAAAATGAAATTTTCAAAAGATGTCTAGAAGTACGCAAAAATGAGTCCCATGATCGCCGGAAAAAATTTTTGCCTACTTCTAGAAATCGTTTTGAAAATTTCCATTTTGTTTTCGATTTTTTGAGAGATTCCGAGTGTGAACGGATCACTATTTGGAGTACGGTAGATGAGAATGAATAAAAAAGCAGAAAAGCACAAAATTGAAATGAGCAATGCTCATTTGGCATGCAAAAAATAACCACTATRAAAAGGATGCAGAAAATTCCGAAACTTCGGGTTCTGAAACGTCCCGGAGCCGAAAATTTTCTAATTTAAAAAGTTCTATTATCTCCATTCCAGGCCTACGATGATGGAAACTTCCTGGCTCACTGTGAACAGGAGTTGAGAAATGAGTCAGGAGAGAAGGAAGACGGAGAATCCGACTCTGACTCAGAAGAAGAAGAAGATCTGGAAGCCATTCACGAGGAGGAAGAAGAAGAGAAGGACCATGAAGAAGTGAAAGCACAGGTGCAGGCTGTCAAACAACAGAAGATCGTGCTCTCCCAATCGACACGCTTCAACGATTGGCTGTCAGACGCCACGAATCTGTTGGAGAACGTGGATTTGAAGGCGTTGAAGACAGAAGAAGGATATGATGATAGTGATTTGCCGGAGAAGATTGTAAGGGGTTTCAAAACATTTTAATTTCAAAACATCTGAAATTCCAGACTCATCCCCATGGCGTTGTCGCTGCTTCAGATTCCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAATTTCCATTTTGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CCTGGAATGGAGATAATAGAACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGAAAATTTCCATTTTGTTTTCGATTTTTTGAGAGATTCCGAGTGTGAACGGATCACTATTTGGAGTACGGTAGATGAGAATGAATAAAAAAGCAGAAAAGCACAAAATTGAAATGAGCAATGCTCATTTGGCATGCAAAAAATAACCACTATAAAAAGGATGCAGAAAATTCCGAAACTTCGGGTTCTGAAACGTCCCGGAGCCGAAAATTTTCTAATTTAAAAAGTTCTATTATCTCCATTCCAGG</canonical_amplicon>
		<polymorphic_amplicon>TGAAAATTTCCATTTTGTTTTCGATTTTTTGAGAGATTCCGAGTGTGAACGGATCACTATTTGGAGTACGGTAGATGAGAATGAATAAAAAAGCAGAAAAGCACAAAATTGAAATGAGCAATGCTCATTTGGCATGCAAAAAATAACCACTATRAAAAGGATGCAGAAAATTCCGAAACTTCGGGTTCTGAAACGTCCCGGAGCCGAAAATTTTCTAATTTAAAAAGTTCTATTATCTCCATTCCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23982</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1393946</contig_pos>
        <strand>+</strand>
        <context>CAGAAAATTC[C/T]GAAACTTCGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCATTTGGCATGCAAAAAATAACCACTATAAAAAGGATGCAGAAAATTC</left_flank>
        <right_flank>GAAACTTCGGGTTCTGAAACGTCCCGGAGCCGAAAATTTTCTAATTTAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTCGGAACCACTACGTTTCAGAACTCGAAATTTCAGAACCTGACAGTTCAGACCCCGACGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTATAATGGTTTTTGCACCCCAAATGAGCGTTTCTCATTTCAATTTTTCAATTTGTGCTTTTTTGCTTTTTTATTCGTTCTCATCTACCGTACTCGAAATATTGATACGTTCACACTCGGAATCTCTCAAAAAAACGAAAAAAATGAAATTTTCAAAAGATGTCTAGAAGTACGCAAAAATGAGTCCCATGATCGCCGGAAAAAATTTTTGCCTACTTCTAGAAATCGTTTTGAAAATTTCCATTTTGTTTTCGATTTTTTGAGAGATTCCGAGTGTGAACGGATCACTATTTGGAGTACGGTAGATGAGAATGAATAAAAAAGCAGAAAAGCACAAAATTGAAATGAGCAATGCTCATTTGGCATGCAAAAAATAACCACTATAAAAAGGATGCAGAAAATTCCGAAACTTCGGGTTCTGAAACGTCCCGGAGCCGAAAATTTTCTAATTTAAAAAGTTCTATTATCTCCATTCCAGGCCTACGATGATGGAAACTTCCTGGCTCACTGTGAACAGGAGTTGAGAAATGAGTCAGGAGAGAAGGAAGACGGAGAATCCGACTCTGACTCAGAAGAAGAAGAAGATCTGGAAGCCATTCACGAGGAGGAAGAAGAAGAGAAGGACCATGAAGAAGTGAAAGCACAGGTGCAGGCTGTCAAACAACAGAAGATCGTGCTCTCCCAATCGACACGCTTCAACGATTGGCTGTCAGACGCCACGAATCTGTTGGAGAACGTGGATTTGAAGGCGTTGAAGACAGAAGAAGGATATGATGATAGTGATTTGCCGGAGAAGATTGTAAGGGGTTTCAAAACATTTTAATTTCAAAACATCTGAAATTCCAGACTCATCCCCATGGCGTTGTCGCTGCTTCAGATTCCTCCGAGAACGAAGAAGATGAGGA</canonical>
            <polymorphic>GTTTCGGAACCACTACGTTTCAGAACTCGAAATTTCAGAACCTGACAGTTCAGACCCCGACGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTATAATGGTTTTTGCACCCCAAATGAGCGTTTCTCATTTCAATTTTTCAATTTGTGCTTTTTTGCTTTTTTATTCGTTCTCATCTACCGTACTCGAAATATTGATACGTTCACACTCGGAATCTCTCAAAAAAACGAAAAAAATGAAATTTTCAAAAGATGTCTAGAAGTACGCAAAAATGAGTCCCATGATCGCCGGAAAAAATTTTTGCCTACTTCTAGAAATCGTTTTGAAAATTTCCATTTTGTTTTCGATTTTTTGAGAGATTCCGAGTGTGAACGGATCACTATTTGGAGTACGGTAGATGAGAATGAATAAAAAAGCAGAAAAGCACAAAATTGAAATGAGCAATGCTCATTTGGCATGCAAAAAATAACCACTATAAAAAGGATGCAGAAAATTCYGAAACTTCGGGTTCTGAAACGTCCCGGAGCCGAAAATTTTCTAATTTAAAAAGTTCTATTATCTCCATTCCAGGCCTACGATGATGGAAACTTCCTGGCTCACTGTGAACAGGAGTTGAGAAATGAGTCAGGAGAGAAGGAAGACGGAGAATCCGACTCTGACTCAGAAGAAGAAGAAGATCTGGAAGCCATTCACGAGGAGGAAGAAGAAGAGAAGGACCATGAAGAAGTGAAAGCACAGGTGCAGGCTGTCAAACAACAGAAGATCGTGCTCTCCCAATCGACACGCTTCAACGATTGGCTGTCAGACGCCACGAATCTGTTGGAGAACGTGGATTTGAAGGCGTTGAAGACAGAAGAAGGATATGATGATAGTGATTTGCCGGAGAAGATTGTAAGGGGTTTCAAAACATTTTAATTTCAAAACATCTGAAATTCCAGACTCATCCCCATGGCGTTGTCGCTGCTTCAGATTCCTCCGAGAACGAAGAAGATGAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAATTTCCATTTTGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CCTGGAATGGAGATAATAGAACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGAAAATTTCCATTTTGTTTTCGATTTTTTGAGAGATTCCGAGTGTGAACGGATCACTATTTGGAGTACGGTAGATGAGAATGAATAAAAAAGCAGAAAAGCACAAAATTGAAATGAGCAATGCTCATTTGGCATGCAAAAAATAACCACTATAAAAAGGATGCAGAAAATTCCGAAACTTCGGGTTCTGAAACGTCCCGGAGCCGAAAATTTTCTAATTTAAAAAGTTCTATTATCTCCATTCCAGG</canonical_amplicon>
		<polymorphic_amplicon>TGAAAATTTCCATTTTGTTTTCGATTTTTTGAGAGATTCCGAGTGTGAACGGATCACTATTTGGAGTACGGTAGATGAGAATGAATAAAAAAGCAGAAAAGCACAAAATTGAAATGAGCAATGCTCATTTGGCATGCAAAAAATAACCACTATAAAAAGGATGCAGAAAATTCYGAAACTTCGGGTTCTGAAACGTCCCGGAGCCGAAAATTTTCTAATTTAAAAAGTTCTATTATCTCCATTCCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23983</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1394337</contig_pos>
        <strand>+</strand>
        <context>TGCCGGAGAA[A/G]ATTGTAAGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGGCGTTGAAGACAGAAGAAGGATATGATGATAGTGATTTGCCGGAGAA</left_flank>
        <right_flank>ATTGTAAGGGGTTTCAAAACATTTTAATTTCAAAACATCTGAAATTCCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACGGTAGATGAGAATGAATAAAAAAGCAGAAAAGCACAAAATTGAAATGAGCAATGCTCATTTGGCATGCAAAAAATAACCACTATAAAAAGGATGCAGAAAATTCCGAAACTTCGGGTTCTGAAACGTCCCGGAGCCGAAAATTTTCTAATTTAAAAAGTTCTATTATCTCCATTCCAGGCCTACGATGATGGAAACTTCCTGGCTCACTGTGAACAGGAGTTGAGAAATGAGTCAGGAGAGAAGGAAGACGGAGAATCCGACTCTGACTCAGAAGAAGAAGAAGATCTGGAAGCCATTCACGAGGAGGAAGAAGAAGAGAAGGACCATGAAGAAGTGAAAGCACAGGTGCAGGCTGTCAAACAACAGAAGATCGTGCTCTCCCAATCGACACGCTTCAACGATTGGCTGTCAGACGCCACGAATCTGTTGGAGAACGTGGATTTGAAGGCGTTGAAGACAGAAGAAGGATATGATGATAGTGATTTGCCGGAGAAGATTGTAAGGGGTTTCAAAACATTTTAATTTCAAAACATCTGAAATTCCAGACTCATCCCCATGGCGTTGTCGCTGCTTCAGATTCCTCCGAGAACGAAGAAGATGAGGACGAGGAAGAAGAAGAAGACCATGTGGCAGTTGAAGAGCAAGTGGCGAAGGTGGTAAAGAAGAAGAGACAAGCAGGAGGAGGAGGAGTTGGAGCCAGAAGTGTGGCCAGTAGTGCTGCCACGTTTACAGCTGAAGAGATTAAGAGGAAGCTGGCGCTGGATAGGAAAAGGAATAAGGAGAAGGTAGGACATCCGGACAAACAGAGGTAGAGAAAGTCAATTTTGGTTACAGATCCGTCTGAAGGTCAAAGGAAAGCAAAGTGCGGTGAGCCGTAACCGAAAGGACAATAAAAATGTGATTTCGGAGTACGCTGGATGGATTTGAGGAGATAATTATGATAATTATCTAGATAATTGGTGTTTTCAATCATATATAGTCACTTTTTGCCCGCT</canonical>
            <polymorphic>GTACGGTAGATGAGAATGAATAAAAAAGCAGAAAAGCACAAAATTGAAATGAGCAATGCTCATTTGGCATGCAAAAAATAACCACTATAAAAAGGATGCAGAAAATTCCGAAACTTCGGGTTCTGAAACGTCCCGGAGCCGAAAATTTTCTAATTTAAAAAGTTCTATTATCTCCATTCCAGGCCTACGATGATGGAAACTTCCTGGCTCACTGTGAACAGGAGTTGAGAAATGAGTCAGGAGAGAAGGAAGACGGAGAATCCGACTCTGACTCAGAAGAAGAAGAAGATCTGGAAGCCATTCACGAGGAGGAAGAAGAAGAGAAGGACCATGAAGAAGTGAAAGCACAGGTGCAGGCTGTCAAACAACAGAAGATCGTGCTCTCCCAATCGACACGCTTCAACGATTGGCTGTCAGACGCCACGAATCTGTTGGAGAACGTGGATTTGAAGGCGTTGAAGACAGAAGAAGGATATGATGATAGTGATTTGCCGGAGAARATTGTAAGGGGTTTCAAAACATTTTAATTTCAAAACATCTGAAATTCCAGACTCATCCCCATGGCGTTGTCGCTGCTTCAGATTCCTCCGAGAACGAAGAAGATGAGGACGAGGAAGAAGAAGAAGACCATGTGGCAGTTGAAGAGCAAGTGGCGAAGGTGGTAAAGAAGAAGAGACAAGCAGGAGGAGGAGGAGTTGGAGCCAGAAGTGTGGCCAGTAGTGCTGCCACGTTTACAGCTGAAGAGATTAAGAGGAAGCTGGCGCTGGATAGGAAAAGGAATAAGGAGAAGGTAGGACATCCGGACAAACAGAGGTAGAGAAAGTCAATTTTGGTTACAGATCCGTCTGAAGGTCAAAGGAAAGCAAAGTGCGGTGAGCCGTAACCGAAAGGACAATAAAAATGTGATTTCGGAGTACGCTGGATGGATTTGAGGAGATAATTATGATAATTATCTAGATAATTGGTGTTTTCAATCATATATAGTCACTTTTTGCCCGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACAGAAGATCGTGCTCTC</pcr_primer_p1>
		<pcr_primer_p2>TGTCTCTTCTTCTTTACCACCT</pcr_primer_p2>
		<pcr_amplicon_size>313</pcr_amplicon_size>
		<canonical_amplicon>CAACAGAAGATCGTGCTCTCCCAATCGACACGCTTCAACGATTGGCTGTCAGACGCCACGAATCTGTTGGAGAACGTGGATTTGAAGGCGTTGAAGACAGAAGAAGGATATGATGATAGTGATTTGCCGGAGAAGATTGTAAGGGGTTTCAAAACATTTTAATTTCAAAACATCTGAAATTCCAGACTCATCCCCATGGCGTTGTCGCTGCTTCAGATTCCTCCGAGAACGAAGAAGATGAGGACGAGGAAGAAGAAGAAGACCATGTGGCAGTTGAAGAGCAAGTGGCGAAGGTGGTAAAGAAGAAGAGACA</canonical_amplicon>
		<polymorphic_amplicon>CAACAGAAGATCGTGCTCTCCCAATCGACACGCTTCAACGATTGGCTGTCAGACGCCACGAATCTGTTGGAGAACGTGGATTTGAAGGCGTTGAAGACAGAAGAAGGATATGATGATAGTGATTTGCCGGAGAARATTGTAAGGGGTTTCAAAACATTTTAATTTCAAAACATCTGAAATTCCAGACTCATCCCCATGGCGTTGTCGCTGCTTCAGATTCCTCCGAGAACGAAGAAGATGAGGACGAGGAAGAAGAAGAAGACCATGTGGCAGTTGAAGAGCAAGTGGCGAAGGTGGTAAAGAAGAAGAGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23984</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1394561</contig_pos>
        <strand>+</strand>
        <context>CCAGTAGTGC[A/T]GCCACGTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGACAAGCAGGAGGAGGAGGAGTTGGAGCCAGAAGTGTGGCCAGTAGTGC</left_flank>
        <right_flank>GCCACGTTTACAGCTGAAGAGATTAAGAGGAAGCTGGCGCTGGATAGGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAGAAATGAGTCAGGAGAGAAGGAAGACGGAGAATCCGACTCTGACTCAGAAGAAGAAGAAGATCTGGAAGCCATTCACGAGGAGGAAGAAGAAGAGAAGGACCATGAAGAAGTGAAAGCACAGGTGCAGGCTGTCAAACAACAGAAGATCGTGCTCTCCCAATCGACACGCTTCAACGATTGGCTGTCAGACGCCACGAATCTGTTGGAGAACGTGGATTTGAAGGCGTTGAAGACAGAAGAAGGATATGATGATAGTGATTTGCCGGAGAAGATTGTAAGGGGTTTCAAAACATTTTAATTTCAAAACATCTGAAATTCCAGACTCATCCCCATGGCGTTGTCGCTGCTTCAGATTCCTCCGAGAACGAAGAAGATGAGGACGAGGAAGAAGAAGAAGACCATGTGGCAGTTGAAGAGCAAGTGGCGAAGGTGGTAAAGAAGAAGAGACAAGCAGGAGGAGGAGGAGTTGGAGCCAGAAGTGTGGCCAGTAGTGCTGCCACGTTTACAGCTGAAGAGATTAAGAGGAAGCTGGCGCTGGATAGGAAAAGGAATAAGGAGAAGGTAGGACATCCGGACAAACAGAGGTAGAGAAAGTCAATTTTGGTTACAGATCCGTCTGAAGGTCAAAGGAAAGCAAAGTGCGGTGAGCCGTAACCGAAAGGACAATAAAAATGTGATTTCGGAGTACGCTGGATGGATTTGAGGAGATAATTATGATAATTATCTAGATAATTGGTGTTTTCAATCATATATAGTCACTTTTTGCCCGCTGTTTCTGTTAACACTTTGTTTTTTGTTCGTTTTTTGTTGAATTTATCATAAAACCTCTCATTTTCTTTCTCCCATTTTTTCCTTTTATCATCCTCTCTCTCCCGCTGAATGCAACACATCTATCGTTGACACGTTCGTGACTTTCGTCGTTGATGCCTATATATTTTATGTTGATAAGAAGGGAGTGATAAGAGAGAAGATTATATCGTCTGGTTACCTAAAAG</canonical>
            <polymorphic>TTGAGAAATGAGTCAGGAGAGAAGGAAGACGGAGAATCCGACTCTGACTCAGAAGAAGAAGAAGATCTGGAAGCCATTCACGAGGAGGAAGAAGAAGAGAAGGACCATGAAGAAGTGAAAGCACAGGTGCAGGCTGTCAAACAACAGAAGATCGTGCTCTCCCAATCGACACGCTTCAACGATTGGCTGTCAGACGCCACGAATCTGTTGGAGAACGTGGATTTGAAGGCGTTGAAGACAGAAGAAGGATATGATGATAGTGATTTGCCGGAGAAGATTGTAAGGGGTTTCAAAACATTTTAATTTCAAAACATCTGAAATTCCAGACTCATCCCCATGGCGTTGTCGCTGCTTCAGATTCCTCCGAGAACGAAGAAGATGAGGACGAGGAAGAAGAAGAAGACCATGTGGCAGTTGAAGAGCAAGTGGCGAAGGTGGTAAAGAAGAAGAGACAAGCAGGAGGAGGAGGAGTTGGAGCCAGAAGTGTGGCCAGTAGTGCWGCCACGTTTACAGCTGAAGAGATTAAGAGGAAGCTGGCGCTGGATAGGAAAAGGAATAAGGAGAAGGTAGGACATCCGGACAAACAGAGGTAGAGAAAGTCAATTTTGGTTACAGATCCGTCTGAAGGTCAAAGGAAAGCAAAGTGCGGTGAGCCGTAACCGAAAGGACAATAAAAATGTGATTTCGGAGTACGCTGGATGGATTTGAGGAGATAATTATGATAATTATCTAGATAATTGGTGTTTTCAATCATATATAGTCACTTTTTGCCCGCTGTTTCTGTTAACACTTTGTTTTTTGTTCGTTTTTTGTTGAATTTATCATAAAACCTCTCATTTTCTTTCTCCCATTTTTTCCTTTTATCATCCTCTCTCTCCCGCTGAATGCAACACATCTATCGTTGACACGTTCGTGACTTTCGTCGTTGATGCCTATATATTTTATGTTGATAAGAAGGGAGTGATAAGAGAGAAGATTATATCGTCTGGTTACCTAAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>502 348 150</canonical_bands>
                <polymorphic_bands>652 348</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGGTGGTAAAGAAGAAGAGAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTATTGTCCTTTCGGTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAGGTGGTAAAGAAGAAGAGACAAGCAGGAGGAGGAGGAGTTGGAGCCAGAAGTGTGGCCAGTAGTGCTGCCACGTTTACAGCTGAAGAGATTAAGAGGAAGCTGGCGCTGGATAGGAAAAGGAATAAGGAGAAGGTAGGACATCCGGACAAACAGAGGTAGAGAAAGTCAATTTTGGTTACAGATCCGTCTGAAGGTCAAAGGAAAGCAAAGTGCGGTGAGCCGTAACCGAAAGGACAATAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>GAAGGTGGTAAAGAAGAAGAGACAAGCAGGAGGAGGAGGAGTTGGAGCCAGAAGTGTGGCCAGTAGTGCWGCCACGTTTACAGCTGAAGAGATTAAGAGGAAGCTGGCGCTGGATAGGAAAAGGAATAAGGAGAAGGTAGGACATCCGGACAAACAGAGGTAGAGAAAGTCAATTTTGGTTACAGATCCGTCTGAAGGTCAAAGGAAAGCAAAGTGCGGTGAGCCGTAACCGAAAGGACAATAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23985</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1408711</contig_pos>
        <strand>+</strand>
        <context>TACATGTACA[A/G]AGTTACAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAGTTAAGGTATTGAAATATATAATTTATTGCTCATTCTTACATGTACA</left_flank>
        <right_flank>AGTTACAAATGAATTCAGAATACATATTCACATAATTAGGTGACCAGCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAATGGTGGGGTTCCGTTTTTTTGATCCTCAAGCCAATCTGGAAAATGGGGCACATGATTCGGAGGGTACAAAAATTTTGGGGTCATTGGGATACAAAGCAATTTAAGGGTACAAAATCTTCAATTCGTGGGTACAAAATATCTAGCAATACTTAATTTGTACCCCCGAACCACTTTGTATCCTCTTGTACCCTCCGAATTATGTGCCGGAAAATGGTCCTGGAAGTCTTGGAATGTGTCTTACTGAGCCTTACCGCGTTTAGGCTCGTTTTGAAGCTCATGGCATGCTGAAAAGAACAGTGAACTCAAAATGTGTAAATTTCAAAATTTTAGAGAAAGTTTCTGAATCGCAATTTTTCGAAATTTTGGTTTCAGCTCATTTCCCAATTTCCTGGAACTTTTTTGATATTCTTCGGCTCAAAAATTGCGGAATCCCGGACTCTTTTAACAGTTAAGGTATTGAAATATATAATTTATTGCTCATTCTTACATGTACATAGTTACAAATGAATTCAGAATACATATTCACATAATTAGGTGACCAGCATGAAAATGGAAATTAAAGAAAAGAAAATAAGGCAAAAAAGTTATGGTTCAACAATTTCAGAATCCCCGTCTTCAGCCACGTCATCAGCCTCCGCACCAGTCTCCGCGTCTTCTACCGACACATCCAACACCTCAAAATCTTCGTCGATTTTCGAATTTGCCGCTCCAATATCATCAAACTCCTTCATCTCGATTTTCATACTAACTCCAGTATATGGCTCAAACTTTGGAAGATATTTCGGACGTTTCTCCAAAAATTCAAACATCGGAGGATTCGAAGCCGTCAAGGTGGTCTTCTGAAGTTCGTCACAGAGATTTTCGAATTCCTCGCGAGTCTCGCAGAAAAGAGCAAGAGCCAATGAGGGATCAATGCTGTCATACTCCATCCATTGCATCATTTGACAGTGATACGTGGAGTCATTCATTTTCGTGTAGACGTCAGAAGTTTGCGA</canonical>
            <polymorphic>CTGAATGGTGGGGTTCCGTTTTTTTGATCCTCAAGCCAATCTGGAAAATGGGGCACATGATTCGGAGGGTACAAAAATTTTGGGGTCATTGGGATACAAAGCAATTTAAGGGTACAAAATCTTCAATTCGTGGGTACAAAATATCTAGCAATACTTAATTTGTACCCCCGAACCACTTTGTATCCTCTTGTACCCTCCGAATTATGTGCCGGAAAATGGTCCTGGAAGTCTTGGAATGTGTCTTACTGAGCCTTACCGCGTTTAGGCTCGTTTTGAAGCTCATGGCATGCTGAAAAGAACAGTGAACTCAAAATGTGTAAATTTCAAAATTTTAGAGAAAGTTTCTGAATCGCAATTTTTCGAAATTTTGGTTTCAGCTCATTTCCCAATTTCCTGGAACTTTTTTGATATTCTTCGGCTCAAAAATTGCGGAATCCCGGACTCTTTTAACAGTTAAGGTATTGAAATATATAATTTATTGCTCATTCTTACATGTACARAGTTACAAATGAATTCAGAATACATATTCACATAATTAGGTGACCAGCATGAAAATGGAAATTAAAGAAAAGAAAATAAGGCAAAAAAGTTATGGTTCAACAATTTCAGAATCCCCGTCTTCAGCCACGTCATCAGCCTCCGCACCAGTCTCCGCGTCTTCTACCGACACATCCAACACCTCAAAATCTTCGTCGATTTTCGAATTTGCCGCTCCAATATCATCAAACTCCTTCATCTCGATTTTCATACTAACTCCAGTATATGGCTCAAACTTTGGAAGATATTTCGGACGTTTCTCCAAAAATTCAAACATCGGAGGATTCGAAGCCGTCAAGGTGGTCTTCTGAAGTTCGTCACAGAGATTTTCGAATTCCTCGCGAGTCTCGCAGAAAAGAGCAAGAGCCAATGAGGGATCAATGCTGTCATACTCCATCCATTGCATCATTTGACAGTGATACGTGGAGTCATTCATTTTCGTGTAGACGTCAGAAGTTTGCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTTCTGAATCGCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGCCTTATTTTCTTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGTTTCTGAATCGCAATTTTTCGAAATTTTGGTTTCAGCTCATTTCCCAATTTCCTGGAACTTTTTTGATATTCTTCGGCTCAAAAATTGCGGAATCCCGGACTCTTTTAACAGTTAAGGTATTGAAATATATAATTTATTGCTCATTCTTACATGTACATAGTTACAAATGAATTCAGAATACATATTCACATAATTAGGTGACCAGCATGAAAATGGAAATTAAAGAAAAGAAAATAAGGCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AGTTTCTGAATCGCAATTTTTCGAAATTTTGGTTTCAGCTCATTTCCCAATTTCCTGGAACTTTTTTGATATTCTTCGGCTCAAAAATTGCGGAATCCCGGACTCTTTTAACAGTTAAGGTATTGAAATATATAATTTATTGCTCATTCTTACATGTACARAGTTACAAATGAATTCAGAATACATATTCACATAATTAGGTGACCAGCATGAAAATGGAAATTAAAGAAAAGAAAATAAGGCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23986</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1409044</contig_pos>
        <strand>+</strand>
        <context>TCGAAGCCGT[C/T]AAGGTGGTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTTCGGACGTTTCTCCAAAAATTCAAACATCGGAGGATTCGAAGCCGT</left_flank>
        <right_flank>AAGGTGGTCTTCTGAAGTTCGTCACAGAGATTTTCGAATTCCTCGCGAGT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGAAAGTTTCTGAATCGCAATTTTTCGAAATTTTGGTTTCAGCTCATTTCCCAATTTCCTGGAACTTTTTTGATATTCTTCGGCTCAAAAATTGCGGAATCCCGGACTCTTTTAACAGTTAAGGTATTGAAATATATAATTTATTGCTCATTCTTACATGTACATAGTTACAAATGAATTCAGAATACATATTCACATAATTAGGTGACCAGCATGAAAATGGAAATTAAAGAAAAGAAAATAAGGCAAAAAAGTTATGGTTCAACAATTTCAGAATCCCCGTCTTCAGCCACGTCATCAGCCTCCGCACCAGTCTCCGCGTCTTCTACCGACACATCCAACACCTCAAAATCTTCGTCGATTTTCGAATTTGCCGCTCCAATATCATCAAACTCCTTCATCTCGATTTTCATACTAACTCCAGTATATGGCTCAAACTTTGGAAGATATTTCGGACGTTTCTCCAAAAATTCAAACATCGGAGGATTCGAAGCCGTCAAGGTGGTCTTCTGAAGTTCGTCACAGAGATTTTCGAATTCCTCGCGAGTCTCGCAGAAAAGAGCAAGAGCCAATGAGGGATCAATGCTGTCATACTCCATCCATTGCATCATTTGACAGTGATACGTGGAGTCATTCATTTTCGTGTAGACGTCAGAAGTTTGCGATGGTAATGGTTCCAAGTCTTCCAACTCGTGGAACCCATTATCATCGATTTTCTCCACTTTCTCTGGTGTCGAATCTCCAGATGATTGTTGTTGTTGTTCCTTCTCAACGAAAAACTTTGAAGTCTTCGGACGACAATGATGTGGATCCAAATAGAATAGTTTTGTTCCGGCGATTCCAACGAAGTAATGGGCAAGATTTGGTTTACCGCCAATGATACCAACGCATTGGGGAAGTTTGAAGAATTCTTGAATGGCTGAAAGGTAGCACGAATTGATGGAAGTTAGGCCGAGACGAAGTGGAATCATTAGGAGAAGCGGTCGCCATTCGGTTCC</canonical>
            <polymorphic>AGAGAAAGTTTCTGAATCGCAATTTTTCGAAATTTTGGTTTCAGCTCATTTCCCAATTTCCTGGAACTTTTTTGATATTCTTCGGCTCAAAAATTGCGGAATCCCGGACTCTTTTAACAGTTAAGGTATTGAAATATATAATTTATTGCTCATTCTTACATGTACATAGTTACAAATGAATTCAGAATACATATTCACATAATTAGGTGACCAGCATGAAAATGGAAATTAAAGAAAAGAAAATAAGGCAAAAAAGTTATGGTTCAACAATTTCAGAATCCCCGTCTTCAGCCACGTCATCAGCCTCCGCACCAGTCTCCGCGTCTTCTACCGACACATCCAACACCTCAAAATCTTCGTCGATTTTCGAATTTGCCGCTCCAATATCATCAAACTCCTTCATCTCGATTTTCATACTAACTCCAGTATATGGCTCAAACTTTGGAAGATATTTCGGACGTTTCTCCAAAAATTCAAACATCGGAGGATTCGAAGCCGTYAAGGTGGTCTTCTGAAGTTCGTCACAGAGATTTTCGAATTCCTCGCGAGTCTCGCAGAAAAGAGCAAGAGCCAATGAGGGATCAATGCTGTCATACTCCATCCATTGCATCATTTGACAGTGATACGTGGAGTCATTCATTTTCGTGTAGACGTCAGAAGTTTGCGATGGTAATGGTTCCAAGTCTTCCAACTCGTGGAACCCATTATCATCGATTTTCTCCACTTTCTCTGGTGTCGAATCTCCAGATGATTGTTGTTGTTGTTCCTTCTCAACGAAAAACTTTGAAGTCTTCGGACGACAATGATGTGGATCCAAATAGAATAGTTTTGTTCCGGCGATTCCAACGAAGTAATGGGCAAGATTTGGTTTACCGCCAATGATACCAACGCATTGGGGAAGTTTGAAGAATTCTTGAATGGCTGAAAGGTAGCACGAATTGATGGAAGTTAGGCCGAGACGAAGTGGAATCATTAGGAGAAGCGGTCGCCATTCGGTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATATCATCAAACTCCTTCATC</pcr_primer_p1>
		<pcr_primer_p2>CTCCACGTATCACTGTCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAATATCATCAAACTCCTTCATCTCGATTTTCATACTAACTCCAGTATATGGCTCAAACTTTGGAAGATATTTCGGACGTTTCTCCAAAAATTCAAACATCGGAGGATTCGAAGCCGTCAAGGTGGTCTTCTGAAGTTCGTCACAGAGATTTTCGAATTCCTCGCGAGTCTCGCAGAAAAGAGCAAGAGCCAATGAGGGATCAATGCTGTCATACTCCATCCATTGCATCATTTGACAGTGATACGTGGAG</canonical_amplicon>
		<polymorphic_amplicon>CAATATCATCAAACTCCTTCATCTCGATTTTCATACTAACTCCAGTATATGGCTCAAACTTTGGAAGATATTTCGGACGTTTCTCCAAAAATTCAAACATCGGAGGATTCGAAGCCGTYAAGGTGGTCTTCTGAAGTTCGTCACAGAGATTTTCGAATTCCTCGCGAGTCTCGCAGAAAAGAGCAAGAGCCAATGAGGGATCAATGCTGTCATACTCCATCCATTGCATCATTTGACAGTGATACGTGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23987</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1410771</contig_pos>
        <strand>+</strand>
        <context>TTGGAAATGT[A/T]TCAATTGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGT</left_flank>
        <right_flank>TCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAACTGACAAAACGTTTATGAATTTATGATAAACAATTTATCAGTTGACAAACTTTTCATATCTTTGATAGGAAAAAAGTAACACTTACCAATCTGATGAATGGAGTACAACGCATCCTTTTCATCAAAGAACATTTGTAGAATCTTCTCATAAACGTCAGACGTCTTCTCAATATCCCACTCAAAGTGTCTTCCAATGTGACGACGTAGCAAGACCTCTCCCAATAGCATCTGAGCACATCGGAGCATACATCCCCAATATTGATCGGTACTTGGTCCGGTGCCGCCTGCAAAAACCAAAAATTGGTATGAAGTTCTTACCAATTGTCTTACCGATTGGCGAGAAATTTCTTCTGTAGGTGAACCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAACTTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTCCAAAGGTTCCAAATATAAATTCAAAATTTGATGAAATTTCTCTACGGCCAACGGGAAAATCGATAGCATATGTCAGCGGGGGACAGAGGAAGGGAGGGCACAATGGATGGTGTTTGCGGAATGAGTGGAGGGAAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATGTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTATGAAATATCACTAATTTTAAGGTTTGAATTGTTTATAATTGAAACCGCTTTGTTCCAGGTAATATCAAATCTCGAGTTTGAT</canonical>
            <polymorphic>TGAAAACTGACAAAACGTTTATGAATTTATGATAAACAATTTATCAGTTGACAAACTTTTCATATCTTTGATAGGAAAAAAGTAACACTTACCAATCTGATGAATGGAGTACAACGCATCCTTTTCATCAAAGAACATTTGTAGAATCTTCTCATAAACGTCAGACGTCTTCTCAATATCCCACTCAAAGTGTCTTCCAATGTGACGACGTAGCAAGACCTCTCCCAATAGCATCTGAGCACATCGGAGCATACATCCCCAATATTGATCGGTACTTGGTCCGGTGCCGCCTGCAAAAACCAAAAATTGGTATGAAGTTCTTACCAATTGTCTTACCGATTGGCGAGAAATTTCTTCTGTAGGTGAACCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAACTTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTWTCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTCCAAAGGTTCCAAATATAAATTCAAAATTTGATGAAATTTCTCTACGGCCAACGGGAAAATCGATAGCATATGTCAGCGGGGGACAGAGGAAGGGAGGGCACAATGGATGGTGTTTGCGGAATGAGTGGAGGGAAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATGTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTATGAAATATCACTAATTTTAAGGTTTGAATTGTTTATAATTGAAACCGCTTTGTTCCAGGTAATATCAAATCTCGAGTTTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTCTGTAGGTGAACCAGAAT</pcr_primer_p1>
		<pcr_primer_p2>GAACTAAAGAGTGGAGAAGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTTCTGTAGGTGAACCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAACTTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTC</canonical_amplicon>
		<polymorphic_amplicon>TCTTCTGTAGGTGAACCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAACTTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTWTCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23988</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1411032</contig_pos>
        <strand>+</strand>
        <context>AATGACGGRC[A/G]GGGGGGGGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGTTTGCGGAATGAGTGGAGGGAAATATGAAAGATGAGCAATGACGGAC</left_flank>
        <right_flank>GGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATTGATCGGTACTTGGTCCGGTGCCGCCTGCAAAAACCAAAAATTGGTATGAAGTTCTTACCAATTGTCTTACCGATTGGCGAGAAATTTCTTCTGTAGGTGAACCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAACTTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTCCAAAGGTTCCAAATATAAATTCAAAATTTGATGAAATTTCTCTACGGCCAACGGGAAAATCGATAGCATATGTCAGCGGGGGACAGAGGAAGGGAGGGCACAATGGATGGTGTTTGCGGAATGAGTGGAGGGAAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATGTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTATGAAATATCACTAATTTTAAGGTTTGAATTGTTTATAATTGAAACCGCTTTGTTCCAGGTAATATCAAATCTCGAGTTTGATGAAGACGCTTATCTCAAAAGCTGGGATCGCTGTTTTAAAAGTGGGGGGACATGAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCAGCGCCGCTACCAACTGAGCTACGCGTGCAAAGAAAAAGCCGCTGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCACAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACT</canonical>
            <polymorphic>ATATTGATCGGTACTTGGTCCGGTGCCGCCTGCAAAAACCAAAAATTGGTATGAAGTTCTTACCAATTGTCTTACCGATTGGCGAGAAATTTCTTCTGTAGGTGAACCAGAATCGAGAAGTCATGTATTTTTTCATTGCGTCAATACCTGAAGAAATTTGGAACTTTTGAAAAATACCAAAAACCGACTCACCATCTTCCTTGCTAATCTCTTTTCCAAGTGCCCAAATTGGAAATGTATCAATTGAGATTCTCTCGAAAGTGTCACAGAACGGAGGTTCCGAAGTCAGCGACGTCTCAACCATGCCGACTCCTTGTTGAACTTCTCCACTCTTTAGTTCCAAAGGTTCCAAATATAAATTCAAAATTTGATGAAATTTCTCTACGGCCAACGGGAAAATCGATAGCATATGTCAGCGGGGGACAGAGGAAGGGAGGGCACAATGGATGGTGTTTGCGGAATGAGTGGAGGGAAATATGAAAGATGAGCAATGACGGACRGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATACTCGATATTGGATTCCTTCAATCTTTATGTATTTCCGTTGAATCAAGGAGGGAAAGAAACGTTTTGTAAAAATTTATACTGTGTTATGAAATATCACTAATTTTAAGGTTTGAATTGTTTATAATTGAAACCGCTTTGTTCCAGGTAATATCAAATCTCGAGTTTGATGAAGACGCTTATCTCAAAAGCTGGGATCGCTGTTTTAAAAGTGGGGGGACATGAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCAGCGCCGCTACCAACTGAGCTACGCGTGCAAAGAAAAAGCCGCTGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCACAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTTCTCCACTCTTTAGTTCC</pcr_primer_p1>
		<pcr_primer_p2>TATTCCTCATTTGCAAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GAACTTCTCCACTCTTTAGTTCCAAAGGTTCCAAATATAAATTCAAAATTTGATGAAATTTCTCTACGGCCAACGGGAAAATCGATAGCATATGTCAGCGGGGGACAGAGGAAGGGAGGGCACAATGGATGGTGTTTGCGGAATGAGTGGAGGGAAATATGAAAGATGAGCAATGACGGACGGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATA</canonical_amplicon>
		<polymorphic_amplicon>GAACTTCTCCACTCTTTAGTTCCAAAGGTTCCAAATATAAATTCAAAATTTGATGAAATTTCTCTACGGCCAACGGGAAAATCGATAGCATATGTCAGCGGGGGACAGAGGAAGGGAGGGCACAATGGATGGTGTTTGCGGAATGAGTGGAGGGAAATATGAAAGATGAGCAATGACGGACRGGGGGGGGGGGGCAATAGATAAGTGGGCTGGGGTAATTGCAGGTCTATTGGGTCCTTGCAAATGAGGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23989</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1425069</contig_pos>
        <strand>+</strand>
        <context>GCCGACCGAA[C/T]GGARGCCTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGACCGATCGGTCAGCTCGGTCGGTCGGTCGGCTGAATTTGCCGACCGAA</left_flank>
        <right_flank>GGAGGCCTTATTTCGAAGTTCAATTATTTTTTCATGTCTTCAAGTTACCC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCGGTTTTCAAAATTTCTAATTTAGCTTTAATTAAATTCGATGATCTTTTTTGTCTTCAAAATTTACCTCGAAACTATCAGGTTACACCACACCCGGGTTTTTCTGATAGTCGTTTTTTAATATGCTTGAAAACTGTAAATTTGTAATAAATTCTTTTTTTCAGAATTTGGATTATCACTAAAATTGCCTCTAAATGATTTAAAATGTTGTACGTCTTCGATATTATCGAAGTGAAGCCTCCATTTCGGTTGGTCGAAAATCGCCGACCGACCCAGCCGACCGTTTTCGTGCCTTTGCGCATTAAAATACCTATATTTGCGTACAAGCGCTTTATTTTAACGACAAACGAGGCATTTAGTGAGTGGTTTGTCGTAAAATACAATGTTTCGTACGCAAACACTCACTGGCATGTTGACGCACAAATGCACGAAAACGGTCGGCGCGCCGACCGATCGGTCAGCTCGGTCGGTCGGTCGGCTGAATTTGCCGACCGAATGGAGGCCTTATTTCGAAGTTCAATTATTTTTTCATGTCTTCAAGTTACCCATTATCGAAAAACGTCCTTTTTACTCAACTTCAAAAAAGAAGACGTCCATTAAAAATCGGGACACACTACTCGGGAGGAAGGCAATAAAACCGGAAAAGAGGTCTCAAGTTTTCTATCTCAAGAAAATTGGGGAAAAAAAAGAGAGAAATCGAAGAACACAAACACACTCATCCTCTCAGTTTTTTCCTCTTTCTCTCTATTTTGTCTTTTGACCAAATTGCTTTGGATTGGGAGAGAAGAAGATTGGATTTTGTTTTTTTTTACTTCTTTCTTTTTGCTTTCTACTTGGGGGAAACTGGCTGACTAAGTAGGTGGGAGTTTTTTTAGGAAATAGAAAAATGATGGTTTTTTGGCTTCTTTTTCAGTCATTTTTCGATAAAAAATGACCTAGTTGTTTTATGGTTTCGGGAAGATTCGGAACTGGACTTCTAAAAAATAACATGAATTTT</canonical>
            <polymorphic>TTTTCGGTTTTCAAAATTTCTAATTTAGCTTTAATTAAATTCGATGATCTTTTTTGTCTTCAAAATTTACCTCGAAACTATCAGGTTACACCACACCCGGGTTTTTCTGATAGTCGTTTTTTAATATGCTTGAAAACTGTAAATTTGTAATAAATTCTTTTTTTCAGAATTTGGATTATCACTAAAATTGCCTCTAAATGATTTAAAATGTTGTACGTCTTCGATATTATCGAAGTGAAGCCTCCATTTCGGTTGGTCGAAAATCGCCGACCGACCCAGCCGACCGTTTTCGTGCCTTTGCGCATTAAAATACCTATATTTGCGTACAAGCGCTTTATTTTAACGACAAACGAGGCATTTAGTGAGTGGTTTGTCGTAAAATACAATGTTTCGTACGCAAACACTCACTGGCATGTTGACGCACAAATGCACGAAAACGGTCGGCGCGCCGACCGATCGGTCAGCTCGGTCGGTCGGTCGGCTGAATTTGCCGACCGAAYGGAGGCCTTATTTCGAAGTTCAATTATTTTTTCATGTCTTCAAGTTACCCATTATCGAAAAACGTCCTTTTTACTCAACTTCAAAAAAGAAGACGTCCATTAAAAATCGGGACACACTACTCGGGAGGAAGGCAATAAAACCGGAAAAGAGGTCTCAAGTTTTCTATCTCAAGAAAATTGGGGAAAAAAAAGAGAGAAATCGAAGAACACAAACACACTCATCCTCTCAGTTTTTTCCTCTTTCTCTCTATTTTGTCTTTTGACCAAATTGCTTTGGATTGGGAGAGAAGAAGATTGGATTTTGTTTTTTTTTACTTCTTTCTTTTTGCTTTCTACTTGGGGGAAACTGGCTGACTAAGTAGGTGGGAGTTTTTTTAGGAAATAGAAAAATGATGGTTTTTTGGCTTCTTTTTCAGTCATTTTTCGATAAAAAATGACCTAGTTGTTTTATGGTTTCGGGAAGATTCGGAACTGGACTTCTAAAAAATAACATGAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAAAATACCTATATTTGCGTACAA</pcr_primer_p1>
		<pcr_primer_p2>AATGGGTAACTTGAAGACATGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTAAAATACCTATATTTGCGTACAAGCGCTTTATTTTAACGACAAACGAGGCATTTAGTGAGTGGTTTGTCGTAAAATACAATGTTTCGTACGCAAACACTCACTGGCATGTTGACGCACAAATGCACGAAAACGGTCGGCGCGCCGACCGATCGGTCAGCTCGGTCGGTCGGTCGGCTGAATTTGCCGACCGAATGGAGGCCTTATTTCGAAGTTCAATTATTTTTTCATGTCTTCAAGTTACCCATT</canonical_amplicon>
		<polymorphic_amplicon>TTAAAATACCTATATTTGCGTACAAGCGCTTTATTTTAACGACAAACGAGGCATTTAGTGAGTGGTTTGTCGTAAAATACAATGTTTCGTACGCAAACACTCACTGGCATGTTGACGCACAAATGCACGAAAACGGTCGGCGCGCCGACCGATCGGTCAGCTCGGTCGGTCGGTCGGCTGAATTTGCCGACCGAAYGGAGGCCTTATTTCGAAGTTCAATTATTTTTTCATGTCTTCAAGTTACCCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23990</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1425073</contig_pos>
        <strand>+</strand>
        <context>ACCGAAYGGA[A/G]GCCTTATTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGATCGGTCAGCTCGGTCGGTCGGTCGGCTGAATTTGCCGACCGAATGGA</left_flank>
        <right_flank>GCCTTATTTCGAAGTTCAATTATTTTTTCATGTCTTCAAGTTACCCATTA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGTTTTCAAAATTTCTAATTTAGCTTTAATTAAATTCGATGATCTTTTTTGTCTTCAAAATTTACCTCGAAACTATCAGGTTACACCACACCCGGGTTTTTCTGATAGTCGTTTTTTAATATGCTTGAAAACTGTAAATTTGTAATAAATTCTTTTTTTCAGAATTTGGATTATCACTAAAATTGCCTCTAAATGATTTAAAATGTTGTACGTCTTCGATATTATCGAAGTGAAGCCTCCATTTCGGTTGGTCGAAAATCGCCGACCGACCCAGCCGACCGTTTTCGTGCCTTTGCGCATTAAAATACCTATATTTGCGTACAAGCGCTTTATTTTAACGACAAACGAGGCATTTAGTGAGTGGTTTGTCGTAAAATACAATGTTTCGTACGCAAACACTCACTGGCATGTTGACGCACAAATGCACGAAAACGGTCGGCGCGCCGACCGATCGGTCAGCTCGGTCGGTCGGTCGGCTGAATTTGCCGACCGAATGGAGGCCTTATTTCGAAGTTCAATTATTTTTTCATGTCTTCAAGTTACCCATTATCGAAAAACGTCCTTTTTACTCAACTTCAAAAAAGAAGACGTCCATTAAAAATCGGGACACACTACTCGGGAGGAAGGCAATAAAACCGGAAAAGAGGTCTCAAGTTTTCTATCTCAAGAAAATTGGGGAAAAAAAAGAGAGAAATCGAAGAACACAAACACACTCATCCTCTCAGTTTTTTCCTCTTTCTCTCTATTTTGTCTTTTGACCAAATTGCTTTGGATTGGGAGAGAAGAAGATTGGATTTTGTTTTTTTTTACTTCTTTCTTTTTGCTTTCTACTTGGGGGAAACTGGCTGACTAAGTAGGTGGGAGTTTTTTTAGGAAATAGAAAAATGATGGTTTTTTGGCTTCTTTTTCAGTCATTTTTCGATAAAAAATGACCTAGTTGTTTTATGGTTTCGGGAAGATTCGGAACTGGACTTCTAAAAAATAACATGAATTTTCGGA</canonical>
            <polymorphic>CGGTTTTCAAAATTTCTAATTTAGCTTTAATTAAATTCGATGATCTTTTTTGTCTTCAAAATTTACCTCGAAACTATCAGGTTACACCACACCCGGGTTTTTCTGATAGTCGTTTTTTAATATGCTTGAAAACTGTAAATTTGTAATAAATTCTTTTTTTCAGAATTTGGATTATCACTAAAATTGCCTCTAAATGATTTAAAATGTTGTACGTCTTCGATATTATCGAAGTGAAGCCTCCATTTCGGTTGGTCGAAAATCGCCGACCGACCCAGCCGACCGTTTTCGTGCCTTTGCGCATTAAAATACCTATATTTGCGTACAAGCGCTTTATTTTAACGACAAACGAGGCATTTAGTGAGTGGTTTGTCGTAAAATACAATGTTTCGTACGCAAACACTCACTGGCATGTTGACGCACAAATGCACGAAAACGGTCGGCGCGCCGACCGATCGGTCAGCTCGGTCGGTCGGTCGGCTGAATTTGCCGACCGAATGGARGCCTTATTTCGAAGTTCAATTATTTTTTCATGTCTTCAAGTTACCCATTATCGAAAAACGTCCTTTTTACTCAACTTCAAAAAAGAAGACGTCCATTAAAAATCGGGACACACTACTCGGGAGGAAGGCAATAAAACCGGAAAAGAGGTCTCAAGTTTTCTATCTCAAGAAAATTGGGGAAAAAAAAGAGAGAAATCGAAGAACACAAACACACTCATCCTCTCAGTTTTTTCCTCTTTCTCTCTATTTTGTCTTTTGACCAAATTGCTTTGGATTGGGAGAGAAGAAGATTGGATTTTGTTTTTTTTTACTTCTTTCTTTTTGCTTTCTACTTGGGGGAAACTGGCTGACTAAGTAGGTGGGAGTTTTTTTAGGAAATAGAAAAATGATGGTTTTTTGGCTTCTTTTTCAGTCATTTTTCGATAAAAAATGACCTAGTTGTTTTATGGTTTCGGGAAGATTCGGAACTGGACTTCTAAAAAATAACATGAATTTTCGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGGCCT</site>
                <isoschizomers>
                    <enzyme>AatI</enzyme>
                    <enzyme>Eco147I</enzyme>
                    <enzyme>PceI</enzyme>
                    <enzyme>SseBI</enzyme>
                    <enzyme>StuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>503 404 93</canonical_bands>
                <polymorphic_bands>907 93</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>345 212 185 100 54 39 24 24 17</canonical_bands>
                <polymorphic_bands>369 212 185 100 54 39 24 17</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTACAAGCGCTTTATTTTAAC</pcr_primer_p1>
		<pcr_primer_p2>AAAGGACGTTTTTCGATAATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGTACAAGCGCTTTATTTTAACGACAAACGAGGCATTTAGTGAGTGGTTTGTCGTAAAATACAATGTTTCGTACGCAAACACTCACTGGCATGTTGACGCACAAATGCACGAAAACGGTCGGCGCGCCGACCGATCGGTCAGCTCGGTCGGTCGGTCGGCTGAATTTGCCGACCGAATGGAGGCCTTATTTCGAAGTTCAATTATTTTTTCATGTCTTCAAGTTACCCATTATCGAAAAACGTCCTTT</canonical_amplicon>
		<polymorphic_amplicon>CGTACAAGCGCTTTATTTTAACGACAAACGAGGCATTTAGTGAGTGGTTTGTCGTAAAATACAATGTTTCGTACGCAAACACTCACTGGCATGTTGACGCACAAATGCACGAAAACGGTCGGCGCGCCGACCGATCGGTCAGCTCGGTCGGTCGGTCGGCTGAATTTGCCGACCGAATGGARGCCTTATTTCGAAGTTCAATTATTTTTTCATGTCTTCAAGTTACCCATTATCGAAAAACGTCCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23991</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1437326</contig_pos>
        <strand></strand>
        <context>tagttttcaa[T/A]ttatattcaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GCGGCAAAAATAGGAATTTTAAAAAAATTAGGTGAACGTATAGTTTTCAA</left_flank>
        <right_flank>TTATATTCAAAGTTTTCAAAGTGATACGAAACTTGAAATCCGAGTTCCAG</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAACTTTCCATCATAGAGATAAAGACTATTTTTCCTAGTTAGGTCACTTCTGGGATAGATGACCCTGGGTTTTTCCAGACCACTGAGCTTATTAAAGGACGGTATTCGTCATTCAAGGTTGTCTTTGGACCCTCATTGTTCTCTACTCAGTGTGAAACACAGCTGAATGTGCTCTTTAAATCTACAAAGATGTACTAATGGTAATTTCAGGATGGGCAGACTGATTACAGGCTCCATCTCAAAAACATCCAAATTATTTTAAACCAACTCAGATTGAGTCAAAAACGGATTGAAAACGGTCCAAGAACTAGGTAACTGGTCTACGGTATCTGCATTAAAAAAATTTTCTGAAAATTCCTGGGTTTTCTGGTATTCCACATTACTGCGAGACACCTATTTTTCACGTTTTCAGTACAAAAACTGGCCAATAAGGGGTGTTTTCCGAAAGCGGCAAAAATAGGAATTTTAAAAAAATTAGGTGAACGTATAGTTTTCAATTTATATTCAAAGTTTTCAAAGTGATACGAAACTTGAAATCCGAGTTCCAGACTCCTGAAAATGCTAAAAATCAACTGTAAATTACTTTTCACAAATCTCATTGACCTGTACTATACATCCAACTCTATCAATGATTGCCCTTTTGTTTATCTGGTATCTCCATAGACCCTCCCAGCCCATATTCTCGCAGATCATAAAATTTTCACTAACACATGCCATCATTATCCTTCAATATCTTTCAAAACCATTTTCCTTGTTCTTGGGCCCCTTTCTCCCCAGTGGCTCCCAAAAGTGCAAACCACCCTCCGTCCGAAACGTATACACATTTCACTCCCTCTCTCTCTCTTTTCGAATCCCAAAAAACCTCCTCAACCAGACTCTCAAGTGTCAGAGAGAGAGGGAGTGGGTCCCTCCCCTGAAGGGACCCCTCGGGGTCGTTTCTCTGTGAAAAACGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA</canonical>
            <polymorphic>TGAAACTTTCCATCATAGAGATAAAGACTATTTTTCCTAGTTAGGTCACTTCTGGGATAGATGACCCTGGGTTTTTCCAGACCACTGAGCTTATTAAAGGACGGTATTCGTCATTCAAGGTTGTCTTTGGACCCTCATTGTTCTCTACTCAGTGTGAAACACAGCTGAATGTGCTCTTTAAATCTACAAAGATGTACTAATGGTAATTTCAGGATGGGCAGACTGATTACAGGCTCCATCTCAAAAACATCCAAATTATTTTAAACCAACTCAGATTGAGTCAAAAACGGATTGAAAACGGTCCAAGAACTAGGTAACTGGTCTACGGTATCTGCATTAAAAAAATTTTCTGAAAATTCCTGGGTTTTCTGGTATTCCACATTACTGCGAGACACCTATTTTTCACGTTTTCAGTACAAAAACTGGCCAATAAGGGGTGTTTTCCGAAAGCGGCAAAAATAGGAATTTTAAAAAAATTAGGTGAACGTATAGTTTTCAAWTTATATTCAAAGTTTTCAAAGTGATACGAAACTTGAAATCCGAGTTCCAGACTCCTGAAAATGCTAAAAATCAACTGTAAATTACTTTTCACAAATCTCATTGACCTGTACTATACATCCAACTCTATCAATGATTGCCCTTTTGTTTATCTGGTATCTCCATAGACCCTCCCAGCCCATATTCTCGCAGATCATAAAATTTTCACTAACACATGCCATCATTATCCTTCAATATCTTTCAAAACCATTTTCCTTGTTCTTGGGCCCCTTTCTCCCCAGTGGCTCCCAAAAGTGCAAACCACCCTCCGTCCGAAACGTATACACATTTCACTCCCTCTCTCTCTCTTTTCGAATCCCAAAAAACCTCCTCAACCAGACTCTCAAGTGTCAGAGAGAGAGGGAGTGGGTCCCTCCCCTGAAGGGACCCCTCGGGGTCGTTTCTCTGTGAAAAACGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>303 204 118 109 90 82 49 23 11 11</canonical_bands>
                <polymorphic_bands>303 204 118 109 105 90 49 11 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGGTCCAAGAACTAGGTAAC</pcr_primer_p1>
		<pcr_primer_p2>CAATCATTGATAGAGTTGGATGT</pcr_primer_p2>
		<pcr_amplicon_size>340</pcr_amplicon_size>
		<canonical_amplicon>ACGGTCCAAGAACTAGGTAACTGGTCTACGGTATCTGCATTAAAAAAATTTTCTGAAAATTCCTGGGTTTTCTGGTATTCCACATTACTGCGAGACACCTATTTTTCACGTTTTCAGTACAAAAACTGGCCAATAAGGGGTGTTTTCCGAAAGCGGCAAAAATAGGAATTTTAAAAAAATTAGGTGAACGTATAGTTTTCAATTTATATTCAAAGTTTTCAAAGTGATACGAAACTTGAAATCCGAGTTCCAGACTCCTGAAAATGCTAAAAATCAACTGTAAATTACTTTTCACAAATCTCATTGACCTGTACTATACATCCAACTCTATCAATGATTG</canonical_amplicon>
		<polymorphic_amplicon>ACGGTCCAAGAACTAGGTAACTGGTCTACGGTATCTGCATTAAAAAAATTTTCTGAAAATTCCTGGGTTTTCTGGTATTCCACATTACTGCGAGACACCTATTTTTCACGTTTTCAGTACAAAAACTGGCCAATAAGGGGTGTTTTCCGAAAGCGGCAAAAATAGGAATTTTAAAAAAATTAGGTGAACGTATAGTTTTCAAWTTATATTCAAAGTTTTCAAAGTGATACGAAACTTGAAATCCGAGTTCCAGACTCCTGAAAATGCTAAAAATCAACTGTAAATTACTTTTCACAAATCTCATTGACCTGTACTATACATCCAACTCTATCAATGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23992</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1439620</contig_pos>
        <strand>+</strand>
        <context>CCTATTTTTC[A/G]YGTTTTCCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAAAATTTTGAAAAAAAAATTGGAAAAAAATGAGTCAGACCTATTTTTC</left_flank>
        <right_flank>TGTTTTCCAGAGAATTTCAATTTTCCTCTCGGTGGGAAATTTAATTCTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCACAATATCACAAACATTTTATTAGTTGAAACGTTTTTGATATCTCTTATAGGAGCCGAGATAATTCAGCTTGACAGTGTGGAGGCCTTTCTATTACAGGTTTTACGTTATCAGAATTTCAGCTTTTTAGGAGAACCTTGTTAAAAAAACGTTATTTTGATTTAGACAATTTTAAAAAAATTTTGAGAAAAATGTTTTCAAAAGGATTGTTTAGACTTTAGAATTAAACATTTTGGAATTTTTAGAATTTACGAAATTTATGTTTTCTAGGTTTTTTAGATTTTCAAATATTCAGACCCCTCGCAGAATTTTTCTGAGTGTTCAAAAAATTTTTGATCTACGAAATTCGTTTTTTTGTTTTCCCGATAGTTCCAATTTTTCCCCACCCACTCCAAATTTTTGTGGGGAACATAGACCGTATTTTCCACTCATTAATTTTTTTCAAAAACAAAATTTTGAAAAAAAAATTGGAAAAAAATGAGTCAGACCTATTTTTCGTGTTTTCCAGAGAATTTCAATTTTCCTCTCGGTGGGAAATTTAATTCTCCTATTTTTCATTAAAATGAGAATGAGCAATAGGTGAGCAATAGTGAGCTACAGATAATTTTCAAGCTCCGCCCACTTTTTTTGGATTGGAAAAATTGTTAAAAATTAAAAAAAATTTCAATTAAAAAAATGCGATTGTAGGTAAATGGACCCTGTTTAATTCAAATATCTTGTTTATTTTCTATGATTCCCAGCTCCTAAAAGTGTAATCAAACGTAATCTGAATGTTCCCCGAACAGGTGATAAATAATCCAAATCATATGCCTCCTTTTCTCGTTTTTTGGTCATTTTTCTCCGCCTAATCCGGTCCGCCCGTTTATGTTTTTTTTTCGTCATCACCTGACCCCGTAGATTTTCTTCTGAATTCAAATTATCAGAAGTCAACCATTCCACCTGCTTGAATTAAGACTTTGTTAACTCTGTTGAACTTTTTAGGAAGTCCTGAGATTCAA</canonical>
            <polymorphic>ATCACAATATCACAAACATTTTATTAGTTGAAACGTTTTTGATATCTCTTATAGGAGCCGAGATAATTCAGCTTGACAGTGTGGAGGCCTTTCTATTACAGGTTTTACGTTATCAGAATTTCAGCTTTTTAGGAGAACCTTGTTAAAAAAACGTTATTTTGATTTAGACAATTTTAAAAAAATTTTGAGAAAAATGTTTTCAAAAGGATTGTTTAGACTTTAGAATTAAACATTTTGGAATTTTTAGAATTTACGAAATTTATGTTTTCTAGGTTTTTTAGATTTTCAAATATTCAGACCCCTCGCAGAATTTTTCTGAGTGTTCAAAAAATTTTTGATCTACGAAATTCGTTTTTTTGTTTTCCCGATAGTTCCAATTTTTCCCCACCCACTCCAAATTTTTGTGGGGAACATAGACCGTATTTTCCACTCATTAATTTTTTTCAAAAACAAAATTTTGAAAAAAAAATTGGAAAAAAATGAGTCAGACCTATTTTTCRTGTTTTCCAGAGAATTTCAATTTTCCTCTCGGTGGGAAATTTAATTCTCCTATTTTTCATTAAAATGAGAATGAGCAATAGGTGAGCAATAGTGAGCTACAGATAATTTTCAAGCTCCGCCCACTTTTTTTGGATTGGAAAAATTGTTAAAAATTAAAAAAAATTTCAATTAAAAAAATGCGATTGTAGGTAAATGGACCCTGTTTAATTCAAATATCTTGTTTATTTTCTATGATTCCCAGCTCCTAAAAGTGTAATCAAACGTAATCTGAATGTTCCCCGAACAGGTGATAAATAATCCAAATCATATGCCTCCTTTTCTCGTTTTTTGGTCATTTTTCTCCGCCTAATCCGGTCCGCCCGTTTATGTTTTTTTTTCGTCATCACCTGACCCCGTAGATTTTCTTCTGAATTCAAATTATCAGAAGTCAACCATTCCACCTGCTTGAATTAAGACTTTGTTAACTCTGTTGAACTTTTTAGGAAGTCCTGAGATTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>239 131 96 73 69 65 60 54 50 36 32 29 23 15 10 8 4 4 2</canonical_bands>
                <polymorphic_bands>239 131 105 96 69 65 60 54 50 36 29 23 15 10 8 4 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCGATAGTTCCAATTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTGAAAATTATCTGTAGCTCACTATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCCGATAGTTCCAATTTTTCCCCACCCACTCCAAATTTTTGTGGGGAACATAGACCGTATTTTCCACTCATTAATTTTTTTCAAAAACAAAATTTTGAAAAAAAAATTGGAAAAAAATGAGTCAGACCTATTTTTCGTGTTTTCCAGAGAATTTCAATTTTCCTCTCGGTGGGAAATTTAATTCTCCTATTTTTCATTAAAATGAGAATGAGCAATAGGTGAGCAATAGTGAGCTACAGATAATTTTCAA</canonical_amplicon>
		<polymorphic_amplicon>CCCGATAGTTCCAATTTTTCCCCACCCACTCCAAATTTTTGTGGGGAACATAGACCGTATTTTCCACTCATTAATTTTTTTCAAAAACAAAATTTTGAAAAAAAAATTGGAAAAAAATGAGTCAGACCTATTTTTCRTGTTTTCCAGAGAATTTCAATTTTCCTCTCGGTGGGAAATTTAATTCTCCTATTTTTCATTAAAATGAGAATGAGCAATAGGTGAGCAATAGTGAGCTACAGATAATTTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23993</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1439621</contig_pos>
        <strand>+</strand>
        <context>CTATTTTTCR[C/T]GTTTTCCAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAAATTTTGAAAAAAAAATTGGAAAAAAATGAGTCAGACCTATTTTTCG</left_flank>
        <right_flank>GTTTTCCAGAGAATTTCAATTTTCCTCTCGGTGGGAAATTTAATTCTCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACAATATCACAAACATTTTATTAGTTGAAACGTTTTTGATATCTCTTATAGGAGCCGAGATAATTCAGCTTGACAGTGTGGAGGCCTTTCTATTACAGGTTTTACGTTATCAGAATTTCAGCTTTTTAGGAGAACCTTGTTAAAAAAACGTTATTTTGATTTAGACAATTTTAAAAAAATTTTGAGAAAAATGTTTTCAAAAGGATTGTTTAGACTTTAGAATTAAACATTTTGGAATTTTTAGAATTTACGAAATTTATGTTTTCTAGGTTTTTTAGATTTTCAAATATTCAGACCCCTCGCAGAATTTTTCTGAGTGTTCAAAAAATTTTTGATCTACGAAATTCGTTTTTTTGTTTTCCCGATAGTTCCAATTTTTCCCCACCCACTCCAAATTTTTGTGGGGAACATAGACCGTATTTTCCACTCATTAATTTTTTTCAAAAACAAAATTTTGAAAAAAAAATTGGAAAAAAATGAGTCAGACCTATTTTTCGTGTTTTCCAGAGAATTTCAATTTTCCTCTCGGTGGGAAATTTAATTCTCCTATTTTTCATTAAAATGAGAATGAGCAATAGGTGAGCAATAGTGAGCTACAGATAATTTTCAAGCTCCGCCCACTTTTTTTGGATTGGAAAAATTGTTAAAAATTAAAAAAAATTTCAATTAAAAAAATGCGATTGTAGGTAAATGGACCCTGTTTAATTCAAATATCTTGTTTATTTTCTATGATTCCCAGCTCCTAAAAGTGTAATCAAACGTAATCTGAATGTTCCCCGAACAGGTGATAAATAATCCAAATCATATGCCTCCTTTTCTCGTTTTTTGGTCATTTTTCTCCGCCTAATCCGGTCCGCCCGTTTATGTTTTTTTTTCGTCATCACCTGACCCCGTAGATTTTCTTCTGAATTCAAATTATCAGAAGTCAACCATTCCACCTGCTTGAATTAAGACTTTGTTAACTCTGTTGAACTTTTTAGGAAGTCCTGAGATTCAAA</canonical>
            <polymorphic>TCACAATATCACAAACATTTTATTAGTTGAAACGTTTTTGATATCTCTTATAGGAGCCGAGATAATTCAGCTTGACAGTGTGGAGGCCTTTCTATTACAGGTTTTACGTTATCAGAATTTCAGCTTTTTAGGAGAACCTTGTTAAAAAAACGTTATTTTGATTTAGACAATTTTAAAAAAATTTTGAGAAAAATGTTTTCAAAAGGATTGTTTAGACTTTAGAATTAAACATTTTGGAATTTTTAGAATTTACGAAATTTATGTTTTCTAGGTTTTTTAGATTTTCAAATATTCAGACCCCTCGCAGAATTTTTCTGAGTGTTCAAAAAATTTTTGATCTACGAAATTCGTTTTTTTGTTTTCCCGATAGTTCCAATTTTTCCCCACCCACTCCAAATTTTTGTGGGGAACATAGACCGTATTTTCCACTCATTAATTTTTTTCAAAAACAAAATTTTGAAAAAAAAATTGGAAAAAAATGAGTCAGACCTATTTTTCGYGTTTTCCAGAGAATTTCAATTTTCCTCTCGGTGGGAAATTTAATTCTCCTATTTTTCATTAAAATGAGAATGAGCAATAGGTGAGCAATAGTGAGCTACAGATAATTTTCAAGCTCCGCCCACTTTTTTTGGATTGGAAAAATTGTTAAAAATTAAAAAAAATTTCAATTAAAAAAATGCGATTGTAGGTAAATGGACCCTGTTTAATTCAAATATCTTGTTTATTTTCTATGATTCCCAGCTCCTAAAAGTGTAATCAAACGTAATCTGAATGTTCCCCGAACAGGTGATAAATAATCCAAATCATATGCCTCCTTTTCTCGTTTTTTGGTCATTTTTCTCCGCCTAATCCGGTCCGCCCGTTTATGTTTTTTTTTCGTCATCACCTGACCCCGTAGATTTTCTTCTGAATTCAAATTATCAGAAGTCAACCATTCCACCTGCTTGAATTAAGACTTTGTTAACTCTGTTGAACTTTTTAGGAAGTCCTGAGATTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>239 131 96 73 69 65 61 54 50 36 32 29 23 15 10 8 4 3 2</canonical_bands>
                <polymorphic_bands>239 131 105 96 69 65 61 54 50 36 29 23 15 10 8 4 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCGATAGTTCCAATTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTGAAAATTATCTGTAGCTCACTATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCCGATAGTTCCAATTTTTCCCCACCCACTCCAAATTTTTGTGGGGAACATAGACCGTATTTTCCACTCATTAATTTTTTTCAAAAACAAAATTTTGAAAAAAAAATTGGAAAAAAATGAGTCAGACCTATTTTTCGTGTTTTCCAGAGAATTTCAATTTTCCTCTCGGTGGGAAATTTAATTCTCCTATTTTTCATTAAAATGAGAATGAGCAATAGGTGAGCAATAGTGAGCTACAGATAATTTTCAA</canonical_amplicon>
		<polymorphic_amplicon>CCCGATAGTTCCAATTTTTCCCCACCCACTCCAAATTTTTGTGGGGAACATAGACCGTATTTTCCACTCATTAATTTTTTTCAAAAACAAAATTTTGAAAAAAAAATTGGAAAAAAATGAGTCAGACCTATTTTTCGYGTTTTCCAGAGAATTTCAATTTTCCTCTCGGTGGGAAATTTAATTCTCCTATTTTTCATTAAAATGAGAATGAGCAATAGGTGAGCAATAGTGAGCTACAGATAATTTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23994</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1456221</contig_pos>
        <strand>+</strand>
        <context>CTTGAAACTG[C/T]GACAAGRCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATCAGATCATTGAAACAATTAGAACTCGAGACATGTCACTTGAAACTG</left_flank>
        <right_flank>GACAAGGCGTACGATCAGTCGGCGCGCCAGTTTCAACATGGTATATCTTG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAGCAGCGTAGAAGCGAGAATGAGGTTCCGAGAAGCGTCCGATTCGGCGAAGATGGGAGAACATTTCTCCTCCCGAGATGAATTCCAATACCATGTACAGATTTGAGTTGTCCTGGAAAACAATGGATTGTTGTTTTTAAAAAATAGGCTTAATCTAACTCTAGTCGACTTTGAAGCTATGTAACTTTTCCAGGAATTGTTCTATTCACTTGAAAGTTTCAGAACTTATTAAACAAAAATTGAGCTTTATTTTTGCTGTGAAATCTTTTCCTGAAAAAATAAACACTAAGGAGATATGCCAGGTGGAAGCTCGCGCTTCTACTAGGTCAAAATCTGGAGCCGAGAGTCTGCGCACTTCCACGTGGCGTAAATTTTCAGGAACTATTTTTTCCGGGAAATTGTCAATTACAAAAATGAAGCACTAGGCTTGTTTGATATGCTCAAACATTATCAGATCATTGAAACAATTAGAACTCGAGACATGTCACTTGAAACTGTGACAAGGCGTACGATCAGTCGGCGCGCCAGTTTCAACATGGTATATCTTGTCAGATATTCATTTTTCAGGAAAATGTTTAACTAGTAAAAGTTAGGTCTTGTATTTTTTATTCAAATGCATTAAAAAATTGAAATTCTAGATTGAAAATGAAGCGAGTTATATCCCAACTTATGCTCAAATGTTTGCTGGATTATTGGGCAAGTCTTGAGCAAGACTTGGACCAAATTTCCAACTTCACCCTCACTTCCCATTTCTAATCTTTAATGTCCAAAAAACTTTTGCAACATTTTTTCCAGCTACTTTTCCCGCTTTTCCTTCCTAATCACGTTTATTTATAAAAACTTGTTTATCACTCTTTTATCACCTGCGGCACGTACACACATTCTAGGAATAATCTTTAATTATGTCCTATTATGGATACACCCACACACTAAACACTAAAACATACCTTGAACGAGAATGTCATGTTGACCAAGAATGGAAAATCGATGGCTTGAAG</canonical>
            <polymorphic>TTGAGCAGCGTAGAAGCGAGAATGAGGTTCCGAGAAGCGTCCGATTCGGCGAAGATGGGAGAACATTTCTCCTCCCGAGATGAATTCCAATACCATGTACAGATTTGAGTTGTCCTGGAAAACAATGGATTGTTGTTTTTAAAAAATAGGCTTAATCTAACTCTAGTCGACTTTGAAGCTATGTAACTTTTCCAGGAATTGTTCTATTCACTTGAAAGTTTCAGAACTTATTAAACAAAAATTGAGCTTTATTTTTGCTGTGAAATCTTTTCCTGAAAAAATAAACACTAAGGAGATATGCCAGGTGGAAGCTCGCGCTTCTACTAGGTCAAAATCTGGAGCCGAGAGTCTGCGCACTTCCACGTGGCGTAAATTTTCAGGAACTATTTTTTCCGGGAAATTGTCAATTACAAAAATGAAGCACTAGGCTTGTTTGATATGCTCAAACATTATCAGATCATTGAAACAATTAGAACTCGAGACATGTCACTTGAAACTGYGACAAGGCGTACGATCAGTCGGCGCGCCAGTTTCAACATGGTATATCTTGTCAGATATTCATTTTTCAGGAAAATGTTTAACTAGTAAAAGTTAGGTCTTGTATTTTTTATTCAAATGCATTAAAAAATTGAAATTCTAGATTGAAAATGAAGCGAGTTATATCCCAACTTATGCTCAAATGTTTGCTGGATTATTGGGCAAGTCTTGAGCAAGACTTGGACCAAATTTCCAACTTCACCCTCACTTCCCATTTCTAATCTTTAATGTCCAAAAAACTTTTGCAACATTTTTTCCAGCTACTTTTCCCGCTTTTCCTTCCTAATCACGTTTATTTATAAAAACTTGTTTATCACTCTTTTATCACCTGCGGCACGTACACACATTCTAGGAATAATCTTTAATTATGTCCTATTATGGATACACCCACACACTAAACACTAAAACATACCTTGAACGAGAATGTCATGTTGACCAAGAATGGAAAATCGATGGCTTGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>237 210 82 66 62 57 52 49 42 27 25 20 12 11 9 7 6 6 6 4 4 2 2 2</canonical_bands>
                <polymorphic_bands>249 210 82 66 62 57 52 49 42 27 25 20 11 9 7 6 6 6 4 4 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 303 182 13</canonical_bands>
                <polymorphic_bands>515 303 182</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>502 485 13</canonical_bands>
                <polymorphic_bands>515 485</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGACTTTGAAGCTATGTAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTGACAAGATATACCATGTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>387</pcr_amplicon_size>
		<canonical_amplicon>CGACTTTGAAGCTATGTAACTTTTCCAGGAATTGTTCTATTCACTTGAAAGTTTCAGAACTTATTAAACAAAAATTGAGCTTTATTTTTGCTGTGAAATCTTTTCCTGAAAAAATAAACACTAAGGAGATATGCCAGGTGGAAGCTCGCGCTTCTACTAGGTCAAAATCTGGAGCCGAGAGTCTGCGCACTTCCACGTGGCGTAAATTTTCAGGAACTATTTTTTCCGGGAAATTGTCAATTACAAAAATGAAGCACTAGGCTTGTTTGATATGCTCAAACATTATCAGATCATTGAAACAATTAGAACTCGAGACATGTCACTTGAAACTGTGACAAGGCGTACGATCAGTCGGCGCGCCAGTTTCAACATGGTATATCTTGTCAG</canonical_amplicon>
		<polymorphic_amplicon>CGACTTTGAAGCTATGTAACTTTTCCAGGAATTGTTCTATTCACTTGAAAGTTTCAGAACTTATTAAACAAAAATTGAGCTTTATTTTTGCTGTGAAATCTTTTCCTGAAAAAATAAACACTAAGGAGATATGCCAGGTGGAAGCTCGCGCTTCTACTAGGTCAAAATCTGGAGCCGAGAGTCTGCGCACTTCCACGTGGCGTAAATTTTCAGGAACTATTTTTTCCGGGAAATTGTCAATTACAAAAATGAAGCACTAGGCTTGTTTGATATGCTCAAACATTATCAGATCATTGAAACAATTAGAACTCGAGACATGTCACTTGAAACTGYGACAAGGCGTACGATCAGTCGGCGCGCCAGTTTCAACATGGTATATCTTGTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23995</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1456228</contig_pos>
        <strand>+</strand>
        <context>CTGYGACAAG[A/G]CGTACGAYCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCATTGAAACAATTAGAACTCGAGACATGTCACTTGAAACTGTGACAAG</left_flank>
        <right_flank>CGTACGATCAGTCGGCGCGCCAGTTTCAACATGGTATATCTTGTCAGATA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGTAGAAGCGAGAATGAGGTTCCGAGAAGCGTCCGATTCGGCGAAGATGGGAGAACATTTCTCCTCCCGAGATGAATTCCAATACCATGTACAGATTTGAGTTGTCCTGGAAAACAATGGATTGTTGTTTTTAAAAAATAGGCTTAATCTAACTCTAGTCGACTTTGAAGCTATGTAACTTTTCCAGGAATTGTTCTATTCACTTGAAAGTTTCAGAACTTATTAAACAAAAATTGAGCTTTATTTTTGCTGTGAAATCTTTTCCTGAAAAAATAAACACTAAGGAGATATGCCAGGTGGAAGCTCGCGCTTCTACTAGGTCAAAATCTGGAGCCGAGAGTCTGCGCACTTCCACGTGGCGTAAATTTTCAGGAACTATTTTTTCCGGGAAATTGTCAATTACAAAAATGAAGCACTAGGCTTGTTTGATATGCTCAAACATTATCAGATCATTGAAACAATTAGAACTCGAGACATGTCACTTGAAACTGTGACAAGGCGTACGATCAGTCGGCGCGCCAGTTTCAACATGGTATATCTTGTCAGATATTCATTTTTCAGGAAAATGTTTAACTAGTAAAAGTTAGGTCTTGTATTTTTTATTCAAATGCATTAAAAAATTGAAATTCTAGATTGAAAATGAAGCGAGTTATATCCCAACTTATGCTCAAATGTTTGCTGGATTATTGGGCAAGTCTTGAGCAAGACTTGGACCAAATTTCCAACTTCACCCTCACTTCCCATTTCTAATCTTTAATGTCCAAAAAACTTTTGCAACATTTTTTCCAGCTACTTTTCCCGCTTTTCCTTCCTAATCACGTTTATTTATAAAAACTTGTTTATCACTCTTTTATCACCTGCGGCACGTACACACATTCTAGGAATAATCTTTAATTATGTCCTATTATGGATACACCCACACACTAAACACTAAAACATACCTTGAACGAGAATGTCATGTTGACCAAGAATGGAAAATCGATGGCTTGAAGGATGCGC</canonical>
            <polymorphic>GCGTAGAAGCGAGAATGAGGTTCCGAGAAGCGTCCGATTCGGCGAAGATGGGAGAACATTTCTCCTCCCGAGATGAATTCCAATACCATGTACAGATTTGAGTTGTCCTGGAAAACAATGGATTGTTGTTTTTAAAAAATAGGCTTAATCTAACTCTAGTCGACTTTGAAGCTATGTAACTTTTCCAGGAATTGTTCTATTCACTTGAAAGTTTCAGAACTTATTAAACAAAAATTGAGCTTTATTTTTGCTGTGAAATCTTTTCCTGAAAAAATAAACACTAAGGAGATATGCCAGGTGGAAGCTCGCGCTTCTACTAGGTCAAAATCTGGAGCCGAGAGTCTGCGCACTTCCACGTGGCGTAAATTTTCAGGAACTATTTTTTCCGGGAAATTGTCAATTACAAAAATGAAGCACTAGGCTTGTTTGATATGCTCAAACATTATCAGATCATTGAAACAATTAGAACTCGAGACATGTCACTTGAAACTGTGACAAGRCGTACGATCAGTCGGCGCGCCAGTTTCAACATGGTATATCTTGTCAGATATTCATTTTTCAGGAAAATGTTTAACTAGTAAAAGTTAGGTCTTGTATTTTTTATTCAAATGCATTAAAAAATTGAAATTCTAGATTGAAAATGAAGCGAGTTATATCCCAACTTATGCTCAAATGTTTGCTGGATTATTGGGCAAGTCTTGAGCAAGACTTGGACCAAATTTCCAACTTCACCCTCACTTCCCATTTCTAATCTTTAATGTCCAAAAAACTTTTGCAACATTTTTTCCAGCTACTTTTCCCGCTTTTCCTTCCTAATCACGTTTATTTATAAAAACTTGTTTATCACTCTTTTATCACCTGCGGCACGTACACACATTCTAGGAATAATCTTTAATTATGTCCTATTATGGATACACCCACACACTAAACACTAAAACATACCTTGAACGAGAATGTCATGTTGACCAAGAATGGAAAATCGATGGCTTGAAGGATGCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCGACTTTGAAGCTATGTAAC</pcr_primer_p1>
		<pcr_primer_p2>CTGAAAAATGAATATCTGACAAGA</pcr_primer_p2>
		<pcr_amplicon_size>405</pcr_amplicon_size>
		<canonical_amplicon>AGTCGACTTTGAAGCTATGTAACTTTTCCAGGAATTGTTCTATTCACTTGAAAGTTTCAGAACTTATTAAACAAAAATTGAGCTTTATTTTTGCTGTGAAATCTTTTCCTGAAAAAATAAACACTAAGGAGATATGCCAGGTGGAAGCTCGCGCTTCTACTAGGTCAAAATCTGGAGCCGAGAGTCTGCGCACTTCCACGTGGCGTAAATTTTCAGGAACTATTTTTTCCGGGAAATTGTCAATTACAAAAATGAAGCACTAGGCTTGTTTGATATGCTCAAACATTATCAGATCATTGAAACAATTAGAACTCGAGACATGTCACTTGAAACTGTGACAAGGCGTACGATCAGTCGGCGCGCCAGTTTCAACATGGTATATCTTGTCAGATATTCATTTTTCAG</canonical_amplicon>
		<polymorphic_amplicon>AGTCGACTTTGAAGCTATGTAACTTTTCCAGGAATTGTTCTATTCACTTGAAAGTTTCAGAACTTATTAAACAAAAATTGAGCTTTATTTTTGCTGTGAAATCTTTTCCTGAAAAAATAAACACTAAGGAGATATGCCAGGTGGAAGCTCGCGCTTCTACTAGGTCAAAATCTGGAGCCGAGAGTCTGCGCACTTCCACGTGGCGTAAATTTTCAGGAACTATTTTTTCCGGGAAATTGTCAATTACAAAAATGAAGCACTAGGCTTGTTTGATATGCTCAAACATTATCAGATCATTGAAACAATTAGAACTCGAGACATGTCACTTGAAACTGTGACAAGRCGTACGATCAGTCGGCGCGCCAGTTTCAACATGGTATATCTTGTCAGATATTCATTTTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23996</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1456236</contig_pos>
        <strand>+</strand>
        <context>AGRCGTACGA[C/T]CAGTCGGCGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACAATTAGAACTCGAGACATGTCACTTGAAACTGTGACAAGGCGTACGA</left_flank>
        <right_flank>CAGTCGGCGCGCCAGTTTCAACATGGTATATCTTGTCAGATATTCATTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGAGAATGAGGTTCCGAGAAGCGTCCGATTCGGCGAAGATGGGAGAACATTTCTCCTCCCGAGATGAATTCCAATACCATGTACAGATTTGAGTTGTCCTGGAAAACAATGGATTGTTGTTTTTAAAAAATAGGCTTAATCTAACTCTAGTCGACTTTGAAGCTATGTAACTTTTCCAGGAATTGTTCTATTCACTTGAAAGTTTCAGAACTTATTAAACAAAAATTGAGCTTTATTTTTGCTGTGAAATCTTTTCCTGAAAAAATAAACACTAAGGAGATATGCCAGGTGGAAGCTCGCGCTTCTACTAGGTCAAAATCTGGAGCCGAGAGTCTGCGCACTTCCACGTGGCGTAAATTTTCAGGAACTATTTTTTCCGGGAAATTGTCAATTACAAAAATGAAGCACTAGGCTTGTTTGATATGCTCAAACATTATCAGATCATTGAAACAATTAGAACTCGAGACATGTCACTTGAAACTGTGACAAGGCGTACGATCAGTCGGCGCGCCAGTTTCAACATGGTATATCTTGTCAGATATTCATTTTTCAGGAAAATGTTTAACTAGTAAAAGTTAGGTCTTGTATTTTTTATTCAAATGCATTAAAAAATTGAAATTCTAGATTGAAAATGAAGCGAGTTATATCCCAACTTATGCTCAAATGTTTGCTGGATTATTGGGCAAGTCTTGAGCAAGACTTGGACCAAATTTCCAACTTCACCCTCACTTCCCATTTCTAATCTTTAATGTCCAAAAAACTTTTGCAACATTTTTTCCAGCTACTTTTCCCGCTTTTCCTTCCTAATCACGTTTATTTATAAAAACTTGTTTATCACTCTTTTATCACCTGCGGCACGTACACACATTCTAGGAATAATCTTTAATTATGTCCTATTATGGATACACCCACACACTAAACACTAAAACATACCTTGAACGAGAATGTCATGTTGACCAAGAATGGAAAATCGATGGCTTGAAGGATGCGCTTCTCGTT</canonical>
            <polymorphic>GCGAGAATGAGGTTCCGAGAAGCGTCCGATTCGGCGAAGATGGGAGAACATTTCTCCTCCCGAGATGAATTCCAATACCATGTACAGATTTGAGTTGTCCTGGAAAACAATGGATTGTTGTTTTTAAAAAATAGGCTTAATCTAACTCTAGTCGACTTTGAAGCTATGTAACTTTTCCAGGAATTGTTCTATTCACTTGAAAGTTTCAGAACTTATTAAACAAAAATTGAGCTTTATTTTTGCTGTGAAATCTTTTCCTGAAAAAATAAACACTAAGGAGATATGCCAGGTGGAAGCTCGCGCTTCTACTAGGTCAAAATCTGGAGCCGAGAGTCTGCGCACTTCCACGTGGCGTAAATTTTCAGGAACTATTTTTTCCGGGAAATTGTCAATTACAAAAATGAAGCACTAGGCTTGTTTGATATGCTCAAACATTATCAGATCATTGAAACAATTAGAACTCGAGACATGTCACTTGAAACTGTGACAAGGCGTACGAYCAGTCGGCGCGCCAGTTTCAACATGGTATATCTTGTCAGATATTCATTTTTCAGGAAAATGTTTAACTAGTAAAAGTTAGGTCTTGTATTTTTTATTCAAATGCATTAAAAAATTGAAATTCTAGATTGAAAATGAAGCGAGTTATATCCCAACTTATGCTCAAATGTTTGCTGGATTATTGGGCAAGTCTTGAGCAAGACTTGGACCAAATTTCCAACTTCACCCTCACTTCCCATTTCTAATCTTTAATGTCCAAAAAACTTTTGCAACATTTTTTCCAGCTACTTTTCCCGCTTTTCCTTCCTAATCACGTTTATTTATAAAAACTTGTTTATCACTCTTTTATCACCTGCGGCACGTACACACATTCTAGGAATAATCTTTAATTATGTCCTATTATGGATACACCCACACACTAAACACTAAAACATACCTTGAACGAGAATGTCATGTTGACCAAGAATGGAAAATCGATGGCTTGAAGGATGCGCTTCTCGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>503 440 57</canonical_bands>
                <polymorphic_bands>560 440</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTCGACTTTGAAGCTATGTAAC</pcr_primer_p1>
		<pcr_primer_p2>CCTGAAAAATGAATATCTGACAA</pcr_primer_p2>
		<pcr_amplicon_size>406</pcr_amplicon_size>
		<canonical_amplicon>AGTCGACTTTGAAGCTATGTAACTTTTCCAGGAATTGTTCTATTCACTTGAAAGTTTCAGAACTTATTAAACAAAAATTGAGCTTTATTTTTGCTGTGAAATCTTTTCCTGAAAAAATAAACACTAAGGAGATATGCCAGGTGGAAGCTCGCGCTTCTACTAGGTCAAAATCTGGAGCCGAGAGTCTGCGCACTTCCACGTGGCGTAAATTTTCAGGAACTATTTTTTCCGGGAAATTGTCAATTACAAAAATGAAGCACTAGGCTTGTTTGATATGCTCAAACATTATCAGATCATTGAAACAATTAGAACTCGAGACATGTCACTTGAAACTGTGACAAGGCGTACGATCAGTCGGCGCGCCAGTTTCAACATGGTATATCTTGTCAGATATTCATTTTTCAGG</canonical_amplicon>
		<polymorphic_amplicon>AGTCGACTTTGAAGCTATGTAACTTTTCCAGGAATTGTTCTATTCACTTGAAAGTTTCAGAACTTATTAAACAAAAATTGAGCTTTATTTTTGCTGTGAAATCTTTTCCTGAAAAAATAAACACTAAGGAGATATGCCAGGTGGAAGCTCGCGCTTCTACTAGGTCAAAATCTGGAGCCGAGAGTCTGCGCACTTCCACGTGGCGTAAATTTTCAGGAACTATTTTTTCCGGGAAATTGTCAATTACAAAAATGAAGCACTAGGCTTGTTTGATATGCTCAAACATTATCAGATCATTGAAACAATTAGAACTCGAGACATGTCACTTGAAACTGTGACAAGGCGTACGAYCAGTCGGCGCGCCAGTTTCAACATGGTATATCTTGTCAGATATTCATTTTTCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23997</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1462484</contig_pos>
        <strand>+</strand>
        <context>AAAATTTTTG[A/G]AAAAAAAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAGCTAAAAATATGGTTTACATACTGTTTAGTTGAAGGGAAAATTTTTG</left_flank>
        <right_flank>AAAAAAAACAAACAATTCTAGATTTTTTAATATCTTAAACACTCTAACAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTATACTTATACTTTGAACCTATATATCTCGGTTCCTGTAAAAGATATCAAATAATAATCAACTGATAAAATTTTTATCATAATATCAGCAACATTCTATCAGTTGACCACTTTCTGATATGTTTTACAGTAACCGAGATATTCGAGTTCAAAGTGGGCAGCTCATTTTTCCAACTCCCTAAAGTTCGAAAAATCAGAATGCAAAAAAAATTATTTTCAGCTCCAAAGAATTATTGTCTAGACACAAAAAATGTTTTGAAGGTCTTCTTCTCTTTTCTATTTTTGGAAATCGGAAAGAAACAACGAACAATATCTCAAGGGATTTGGGTATCAAGGATTATAGGATTTAGAAAAGCGGATTATCTTTCTTGGGGAGGGAGAGAAATCTAAAATTAATTTTCTAAAAAAGGGTTTTTCTCCAAAACAGTTCTTAACTTTGGTTAGAATTGAGCTAAAAATATGGTTTACATACTGTTTAGTTGAAGGGAAAATTTTTGAAAAAAAAACAAACAATTCTAGATTTTTTAATATCTTAAACACTCTAACAGAAGGCTGCTCAACCCACCAACTTTGAGCCCGTATATCTCAGTTCCTGTGAGAGATATCAAAAACTGGTCAATTGATAAAATATTGGTGATACTATGATTGATAAACATTTTGTCAGTTAAACACTTTTTGATATCTTTCACAGGAACCGAGATAAATGGGCTCAAAGTGGACGGTTTGGGTGGCCTTCTATTAGAGTGTTTACGGTACTTTTACTTTGAGCTCAATTATCTTGGTTGCTAGAAACCATACTAAAAAAGTTAACTGATAAAATGTTGGGGGTATTGTGATAAAAATTTTTGCTGTTGACAAATTTTTGACATCTCTTATAGGATTCGATATAATTGAGCATTTCAAAACGCGGAAGTGTGCCCCGCAGGTGTTTTTCTTCTTCTTGAGATTCATAAAGTAAGAAGAAAAGAAGAAGCTGAAGTGTGATCATTGATCCCCGA</canonical>
            <polymorphic>CTCTATACTTATACTTTGAACCTATATATCTCGGTTCCTGTAAAAGATATCAAATAATAATCAACTGATAAAATTTTTATCATAATATCAGCAACATTCTATCAGTTGACCACTTTCTGATATGTTTTACAGTAACCGAGATATTCGAGTTCAAAGTGGGCAGCTCATTTTTCCAACTCCCTAAAGTTCGAAAAATCAGAATGCAAAAAAAATTATTTTCAGCTCCAAAGAATTATTGTCTAGACACAAAAAATGTTTTGAAGGTCTTCTTCTCTTTTCTATTTTTGGAAATCGGAAAGAAACAACGAACAATATCTCAAGGGATTTGGGTATCAAGGATTATAGGATTTAGAAAAGCGGATTATCTTTCTTGGGGAGGGAGAGAAATCTAAAATTAATTTTCTAAAAAAGGGTTTTTCTCCAAAACAGTTCTTAACTTTGGTTAGAATTGAGCTAAAAATATGGTTTACATACTGTTTAGTTGAAGGGAAAATTTTTGRAAAAAAAACAAACAATTCTAGATTTTTTAATATCTTAAACACTCTAACAGAAGGCTGCTCAACCCACCAACTTTGAGCCCGTATATCTCAGTTCCTGTGAGAGATATCAAAAACTGGTCAATTGATAAAATATTGGTGATACTATGATTGATAAACATTTTGTCAGTTAAACACTTTTTGATATCTTTCACAGGAACCGAGATAAATGGGCTCAAAGTGGACGGTTTGGGTGGCCTTCTATTAGAGTGTTTACGGTACTTTTACTTTGAGCTCAATTATCTTGGTTGCTAGAAACCATACTAAAAAAGTTAACTGATAAAATGTTGGGGGTATTGTGATAAAAATTTTTGCTGTTGACAAATTTTTGACATCTCTTATAGGATTCGATATAATTGAGCATTTCAAAACGCGGAAGTGTGCCCCGCAGGTGTTTTTCTTCTTCTTGAGATTCATAAAGTAAGAAGAAAAGAAGAAGCTGAAGTGTGATCATTGATCCCCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGGTTAGAATTGAGCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TCAAGAAGAAGAAAAACACCTG</pcr_primer_p2>
		<pcr_amplicon_size>509</pcr_amplicon_size>
		<canonical_amplicon>TTTGGTTAGAATTGAGCTAAAAATATGGTTTACATACTGTTTAGTTGAAGGGAAAATTTTTGAAAAAAAAACAAACAATTCTAGATTTTTTAATATCTTAAACACTCTAACAGAAGGCTGCTCAACCCACCAACTTTGAGCCCGTATATCTCAGTTCCTGTGAGAGATATCAAAAACTGGTCAATTGATAAAATATTGGTGATACTATGATTGATAAACATTTTGTCAGTTAAACACTTTTTGATATCTTTCACAGGAACCGAGATAAATGGGCTCAAAGTGGACGGTTTGGGTGGCCTTCTATTAGAGTGTTTACGGTACTTTTACTTTGAGCTCAATTATCTTGGTTGCTAGAAACCATACTAAAAAAGTTAACTGATAAAATGTTGGGGGTATTGTGATAAAAATTTTTGCTGTTGACAAATTTTTGACATCTCTTATAGGATTCGATATAATTGAGCATTTCAAAACGCGGAAGTGTGCCCCGCAGGTGTTTTTCTTCTTCTTGA</canonical_amplicon>
		<polymorphic_amplicon>TTTGGTTAGAATTGAGCTAAAAATATGGTTTACATACTGTTTAGTTGAAGGGAAAATTTTTGRAAAAAAAACAAACAATTCTAGATTTTTTAATATCTTAAACACTCTAACAGAAGGCTGCTCAACCCACCAACTTTGAGCCCGTATATCTCAGTTCCTGTGAGAGATATCAAAAACTGGTCAATTGATAAAATATTGGTGATACTATGATTGATAAACATTTTGTCAGTTAAACACTTTTTGATATCTTTCACAGGAACCGAGATAAATGGGCTCAAAGTGGACGGTTTGGGTGGCCTTCTATTAGAGTGTTTACGGTACTTTTACTTTGAGCTCAATTATCTTGGTTGCTAGAAACCATACTAAAAAAGTTAACTGATAAAATGTTGGGGGTATTGTGATAAAAATTTTTGCTGTTGACAAATTTTTGACATCTCTTATAGGATTCGATATAATTGAGCATTTCAAAACGCGGAAGTGTGCCCCGCAGGTGTTTTTCTTCTTCTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23998</snp_id>
        <super_contig>c000201113.Contig1</super_contig>
        <contig_pos>1464629</contig_pos>
        <strand>+</strand>
        <context>TGTCATTTCT[C/T]TTCTTCGGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAAGAAGACGTGGGTGTGAAGAAGAAGGGGTAGAAGAGGTGTCATTTCT</left_flank>
        <right_flank>TTCTTCGGGAAAAAAAGACGAAGAAGAGGACTCTCGAAAAAATCTTCTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCCATTCCATTTGAAATGTTAATTTTCAGACTACCCAAGTTTTGAGGATTCAATAAAGTCTAAACACGTCCAGATTATAAGAATTCCAGACTTTCTTGCGATTCTTTAAAGTTGATTGGACCTCCTCAGAAACAGTTTAGACCATAAATCCCTAGGTTTTGCTCCAATTTTTCTCAAACTGTAATTATCAGATTTCTCAAGTTCGGAGGATTCAAAAAAGTACAAACAAGCCTATCTTTCCAAGATTTCCAATTTTTCAGTGATCCCGCCGCGACGCGACCGCATCGCACCCTAATAAGGGTCCCCTCGAATTCAAACGGGGGGAGGAGGGAGAGAAAGGAAAGTATCGAAACTCTCTCTCTCTTCTTTTTTTTCTCCACTGAATTTGATTTCCGATGTCGTCGACTCTTCAGAATCAGAAGACGTCGTCGTCGGGTCGAAAGAAGAGGAAGAAGACGTGGGTGTGAAGAAGAAGGGGTAGAAGAGGTGTCATTTCTTTTCTTCGGGAAAAAAAGACGAAGAAGAGGACTCTCGAAAAAATCTTCTCAAATTTAAATTGGGTTTTGTGAGCTCCTGTGTGTGCTTCTTCTTCTCCAAAAGTTTTAGATGGCTTCAAAAGTTTGATATGCAGGTTCAGGAGGTACAGTAACATTTTTCAAAGAATGGAGTAAAACCATTGAGGGATAGTAATGGATTTCCCAATTAGACATTTGAAAAACTTTTTATCGTTAAAAATCTAGGCGGAAACGGAAATCGGCTCATAAGTTCTTTCAAATCTGTCCGATTGCGTTGAAATTTAAATTTCCAAAATTAAGGTGTTTTAAGGGTTCAGAAAAATGTAAATCTCAAAGTTTTACTTTTTTCAAAGAACCGTAGCCAGCTCAAATGTAACAAAGGAGTGGAATTCAATTGTCACACCACAAAGCACCTCATAGTTGTCTTCGAAATTGCCCAATCAATGGGATTTCCAGATATTTCAAAATTTCAGAAATTTGCCA</canonical>
            <polymorphic>TGTCCATTCCATTTGAAATGTTAATTTTCAGACTACCCAAGTTTTGAGGATTCAATAAAGTCTAAACACGTCCAGATTATAAGAATTCCAGACTTTCTTGCGATTCTTTAAAGTTGATTGGACCTCCTCAGAAACAGTTTAGACCATAAATCCCTAGGTTTTGCTCCAATTTTTCTCAAACTGTAATTATCAGATTTCTCAAGTTCGGAGGATTCAAAAAAGTACAAACAAGCCTATCTTTCCAAGATTTCCAATTTTTCAGTGATCCCGCCGCGACGCGACCGCATCGCACCCTAATAAGGGTCCCCTCGAATTCAAACGGGGGGAGGAGGGAGAGAAAGGAAAGTATCGAAACTCTCTCTCTCTTCTTTTTTTTCTCCACTGAATTTGATTTCCGATGTCGTCGACTCTTCAGAATCAGAAGACGTCGTCGTCGGGTCGAAAGAAGAGGAAGAAGACGTGGGTGTGAAGAAGAAGGGGTAGAAGAGGTGTCATTTCTYTTCTTCGGGAAAAAAAGACGAAGAAGAGGACTCTCGAAAAAATCTTCTCAAATTTAAATTGGGTTTTGTGAGCTCCTGTGTGTGCTTCTTCTTCTCCAAAAGTTTTAGATGGCTTCAAAAGTTTGATATGCAGGTTCAGGAGGTACAGTAACATTTTTCAAAGAATGGAGTAAAACCATTGAGGGATAGTAATGGATTTCCCAATTAGACATTTGAAAAACTTTTTATCGTTAAAAATCTAGGCGGAAACGGAAATCGGCTCATAAGTTCTTTCAAATCTGTCCGATTGCGTTGAAATTTAAATTTCCAAAATTAAGGTGTTTTAAGGGTTCAGAAAAATGTAAATCTCAAAGTTTTACTTTTTTCAAAGAACCGTAGCCAGCTCAAATGTAACAAAGGAGTGGAATTCAATTGTCACACCACAAAGCACCTCATAGTTGTCTTCGAAATTGCCCAATCAATGGGATTTCCAGATATTTCAAAATTTCAGAAATTTGCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTGAATTTGATTTCCGATGT</pcr_primer_p1>
		<pcr_primer_p2>TATCAAACTTTTGAAGCCATCTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACTGAATTTGATTTCCGATGTCGTCGACTCTTCAGAATCAGAAGACGTCGTCGTCGGGTCGAAAGAAGAGGAAGAAGACGTGGGTGTGAAGAAGAAGGGGTAGAAGAGGTGTCATTTCTTTTCTTCGGGAAAAAAAGACGAAGAAGAGGACTCTCGAAAAAATCTTCTCAAATTTAAATTGGGTTTTGTGAGCTCCTGTGTGTGCTTCTTCTTCTCCAAAAGTTTTAGATGGCTTCAAAAGTTTGATA</canonical_amplicon>
		<polymorphic_amplicon>ACTGAATTTGATTTCCGATGTCGTCGACTCTTCAGAATCAGAAGACGTCGTCGTCGGGTCGAAAGAAGAGGAAGAAGACGTGGGTGTGAAGAAGAAGGGGTAGAAGAGGTGTCATTTCTYTTCTTCGGGAAAAAAAGACGAAGAAGAGGACTCTCGAAAAAATCTTCTCAAATTTAAATTGGGTTTTGTGAGCTCCTGTGTGTGCTTCTTCTTCTCCAAAAGTTTTAGATGGCTTCAAAAGTTTGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb23999</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>27800</contig_pos>
        <strand>+</strand>
        <context>ATTTTTCTGA[C/T]CCAAAAAGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAGTATTTTCCCTGTATTCTTTCAATTTCTTCAAAAAGTATTTTTCTGA</left_flank>
        <right_flank>CCAAAAAGTAATTCAAGCCCAACTTTCGAAAGTATTCTATTTCCCGCCAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCGAACAATCAACGTCATCTCCAACGTCTTCTGGAGTCTCCTCAATGACGTCATCGACTCCTGGAACCATCACAACGTCTTCTGGCGGCATGATGAGCGGTTCCATATTCTCAGACGAATTTTCTGGAATCTATCCAACTGTAAATGTGCCACCTGGCTTCCCATGGGGAGACGCTCTGAAGAGTATTGATTTGGAGCCGTTCTAAACAATTTTTCAAATTTCGCGGGTTGCTTTTAAACTGTTGAACTTTCAAAAACTACTCCAAATCTCTTCTTCTAGCTCTTTCCATGATTTTTGATTTTTCAATTTTTCCCCCCATTTGTCTACCTCATAGAATTCTCCCCTTCTTTTTCCGAGTTCTTTTTAGTCCGGTCCCTTAGTACCCCAAAATTCGTCTTTAGTTATTTTTTTTTCGATTTTTCTTGAATTGTATTAAAACGATTTTCTCCAGTATTTTCCCTGTATTCTTTCAATTTCTTCAAAAAGTATTTTTCTGATCCAAAAAGTAATTCAAGCCCAACTTTCGAAAGTATTCTATTTCCCGCCAAAATGTATTTTTCTCCCAATTTTTTTTCCATATATTGTATTCGTCCTCTCAGCTTTACCAAGCCAGTTTTCATCGTTCTTTCACTCTCCCCAATTCTAAAATTTTGTTCTGGAAATCTGAAATTTCCACTGCAAAATCTCCTGATTGTATATGTTGAACCCCAGCAGAAAAAAACTTATATACCAAATTGTGTTAGCTCTCTCCTCCTGATATTTATTCTCCAAAAAATCCCTTTCCCTCATCTCTTTCCCATCTACCGGATGATTCTCCTTGACGGAGCCGGCTGAAAAAAGTATCGAAATTCATTTTTGAAATGTTTTTTTTAATTTCAAATTGATTCGTTTTTTGTGTCAATGATGAATGAGGAATGAAAATTATAATTAAAATCGTTTTTTTTTTAGGTATTAGAATTCCACAGTGCGCGTATGGAGCATACTGTAGACTATAAGTA</canonical>
            <polymorphic>TCCGAACAATCAACGTCATCTCCAACGTCTTCTGGAGTCTCCTCAATGACGTCATCGACTCCTGGAACCATCACAACGTCTTCTGGCGGCATGATGAGCGGTTCCATATTCTCAGACGAATTTTCTGGAATCTATCCAACTGTAAATGTGCCACCTGGCTTCCCATGGGGAGACGCTCTGAAGAGTATTGATTTGGAGCCGTTCTAAACAATTTTTCAAATTTCGCGGGTTGCTTTTAAACTGTTGAACTTTCAAAAACTACTCCAAATCTCTTCTTCTAGCTCTTTCCATGATTTTTGATTTTTCAATTTTTCCCCCCATTTGTCTACCTCATAGAATTCTCCCCTTCTTTTTCCGAGTTCTTTTTAGTCCGGTCCCTTAGTACCCCAAAATTCGTCTTTAGTTATTTTTTTTTCGATTTTTCTTGAATTGTATTAAAACGATTTTCTCCAGTATTTTCCCTGTATTCTTTCAATTTCTTCAAAAAGTATTTTTCTGAYCCAAAAAGTAATTCAAGCCCAACTTTCGAAAGTATTCTATTTCCCGCCAAAATGTATTTTTCTCCCAATTTTTTTTCCATATATTGTATTCGTCCTCTCAGCTTTACCAAGCCAGTTTTCATCGTTCTTTCACTCTCCCCAATTCTAAAATTTTGTTCTGGAAATCTGAAATTTCCACTGCAAAATCTCCTGATTGTATATGTTGAACCCCAGCAGAAAAAAACTTATATACCAAATTGTGTTAGCTCTCTCCTCCTGATATTTATTCTCCAAAAAATCCCTTTCCCTCATCTCTTTCCCATCTACCGGATGATTCTCCTTGACGGAGCCGGCTGAAAAAAGTATCGAAATTCATTTTTGAAATGTTTTTTTTAATTTCAAATTGATTCGTTTTTTGTGTCAATGATGAATGAGGAATGAAAATTATAATTAAAATCGTTTTTTTTTTAGGTATTAGAATTCCACAGTGCGCGTATGGAGCATACTGTAGACTATAAGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAAATTCGTCTTTAGTTATTTT</pcr_primer_p1>
		<pcr_primer_p2>AGAGTGAAAGAACGATGAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAAAATTCGTCTTTAGTTATTTTTTTTTCGATTTTTCTTGAATTGTATTAAAACGATTTTCTCCAGTATTTTCCCTGTATTCTTTCAATTTCTTCAAAAAGTATTTTTCTGATCCAAAAAGTAATTCAAGCCCAACTTTCGAAAGTATTCTATTTCCCGCCAAAATGTATTTTTCTCCCAATTTTTTTTCCATATATTGTATTCGTCCTCTCAGCTTTACCAAGCCAGTTTTCATCGTTCTTTCACTCT</canonical_amplicon>
		<polymorphic_amplicon>CCAAAATTCGTCTTTAGTTATTTTTTTTTCGATTTTTCTTGAATTGTATTAAAACGATTTTCTCCAGTATTTTCCCTGTATTCTTTCAATTTCTTCAAAAAGTATTTTTCTGAYCCAAAAAGTAATTCAAGCCCAACTTTCGAAAGTATTCTATTTCCCGCCAAAATGTATTTTTCTCCCAATTTTTTTTCCATATATTGTATTCGTCCTCTCAGCTTTACCAAGCCAGTTTTCATCGTTCTTTCACTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24000</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>27987</contig_pos>
        <strand>+</strand>
        <context>ACTGCAAAAT[C/T]TCCTGATTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCCAATTCTAAAATTTTGTTCTGGAAATCTGAAATTTCCACTGCAAAAT</left_flank>
        <right_flank>TCCTGATTGTATATGTTGAACCCCAGCAGAAAAAAACTTATATACCAAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGATTTGGAGCCGTTCTAAACAATTTTTCAAATTTCGCGGGTTGCTTTTAAACTGTTGAACTTTCAAAAACTACTCCAAATCTCTTCTTCTAGCTCTTTCCATGATTTTTGATTTTTCAATTTTTCCCCCCATTTGTCTACCTCATAGAATTCTCCCCTTCTTTTTCCGAGTTCTTTTTAGTCCGGTCCCTTAGTACCCCAAAATTCGTCTTTAGTTATTTTTTTTTCGATTTTTCTTGAATTGTATTAAAACGATTTTCTCCAGTATTTTCCCTGTATTCTTTCAATTTCTTCAAAAAGTATTTTTCTGATCCAAAAAGTAATTCAAGCCCAACTTTCGAAAGTATTCTATTTCCCGCCAAAATGTATTTTTCTCCCAATTTTTTTTCCATATATTGTATTCGTCCTCTCAGCTTTACCAAGCCAGTTTTCATCGTTCTTTCACTCTCCCCAATTCTAAAATTTTGTTCTGGAAATCTGAAATTTCCACTGCAAAATCTCCTGATTGTATATGTTGAACCCCAGCAGAAAAAAACTTATATACCAAATTGTGTTAGCTCTCTCCTCCTGATATTTATTCTCCAAAAAATCCCTTTCCCTCATCTCTTTCCCATCTACCGGATGATTCTCCTTGACGGAGCCGGCTGAAAAAAGTATCGAAATTCATTTTTGAAATGTTTTTTTTAATTTCAAATTGATTCGTTTTTTGTGTCAATGATGAATGAGGAATGAAAATTATAATTAAAATCGTTTTTTTTTTAGGTATTAGAATTCCACAGTGCGCGTATGGAGCATACTGTAGACTATAAGTATACGGTCAGTGTACTTCATCTATGGAACATAGAAAGTATCCAAATTTCAATATTGCCAACAGTATATGATGTTTGGTATACTGTAGACTATGAGTATGCGGTAAGTGTACTTCTTATATATCAATATTTTAGGGCTAATATGTAATTGAGTATTAAATCATACTACTACATCAACCATAATAGCCAA</canonical>
            <polymorphic>TTGATTTGGAGCCGTTCTAAACAATTTTTCAAATTTCGCGGGTTGCTTTTAAACTGTTGAACTTTCAAAAACTACTCCAAATCTCTTCTTCTAGCTCTTTCCATGATTTTTGATTTTTCAATTTTTCCCCCCATTTGTCTACCTCATAGAATTCTCCCCTTCTTTTTCCGAGTTCTTTTTAGTCCGGTCCCTTAGTACCCCAAAATTCGTCTTTAGTTATTTTTTTTTCGATTTTTCTTGAATTGTATTAAAACGATTTTCTCCAGTATTTTCCCTGTATTCTTTCAATTTCTTCAAAAAGTATTTTTCTGATCCAAAAAGTAATTCAAGCCCAACTTTCGAAAGTATTCTATTTCCCGCCAAAATGTATTTTTCTCCCAATTTTTTTTCCATATATTGTATTCGTCCTCTCAGCTTTACCAAGCCAGTTTTCATCGTTCTTTCACTCTCCCCAATTCTAAAATTTTGTTCTGGAAATCTGAAATTTCCACTGCAAAATYTCCTGATTGTATATGTTGAACCCCAGCAGAAAAAAACTTATATACCAAATTGTGTTAGCTCTCTCCTCCTGATATTTATTCTCCAAAAAATCCCTTTCCCTCATCTCTTTCCCATCTACCGGATGATTCTCCTTGACGGAGCCGGCTGAAAAAAGTATCGAAATTCATTTTTGAAATGTTTTTTTTAATTTCAAATTGATTCGTTTTTTGTGTCAATGATGAATGAGGAATGAAAATTATAATTAAAATCGTTTTTTTTTTAGGTATTAGAATTCCACAGTGCGCGTATGGAGCATACTGTAGACTATAAGTATACGGTCAGTGTACTTCATCTATGGAACATAGAAAGTATCCAAATTTCAATATTGCCAACAGTATATGATGTTTGGTATACTGTAGACTATGAGTATGCGGTAAGTGTACTTCTTATATATCAATATTTTAGGGCTAATATGTAATTGAGTATTAAATCATACTACTACATCAACCATAATAGCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTATTTTTCTCCCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>GGTAGATGGGAAAGAGATGAG</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>AATGTATTTTTCTCCCAATTTTTTTTCCATATATTGTATTCGTCCTCTCAGCTTTACCAAGCCAGTTTTCATCGTTCTTTCACTCTCCCCAATTCTAAAATTTTGTTCTGGAAATCTGAAATTTCCACTGCAAAATCTCCTGATTGTATATGTTGAACCCCAGCAGAAAAAAACTTATATACCAAATTGTGTTAGCTCTCTCCTCCTGATATTTATTCTCCAAAAAATCCCTTTCCCTCATCTCTTTCCCATCTACC</canonical_amplicon>
		<polymorphic_amplicon>AATGTATTTTTCTCCCAATTTTTTTTCCATATATTGTATTCGTCCTCTCAGCTTTACCAAGCCAGTTTTCATCGTTCTTTCACTCTCCCCAATTCTAAAATTTTGTTCTGGAAATCTGAAATTTCCACTGCAAAATYTCCTGATTGTATATGTTGAACCCCAGCAGAAAAAAACTTATATACCAAATTGTGTTAGCTCTCTCCTCCTGATATTTATTCTCCAAAAAATCCCTTTCCCTCATCTCTTTCCCATCTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24001</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>28053</contig_pos>
        <strand>+</strand>
        <context>TAGCTCTCTC[C/T]TCCTGATATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGAACCCCAGCAGAAAAAAACTTATATACCAAATTGTGTTAGCTCTCTC</left_flank>
        <right_flank>TCCTGATATTTATTCTCCAAAAAATCCCTTTCCCTCATCTCTTTCCCATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAACTACTCCAAATCTCTTCTTCTAGCTCTTTCCATGATTTTTGATTTTTCAATTTTTCCCCCCATTTGTCTACCTCATAGAATTCTCCCCTTCTTTTTCCGAGTTCTTTTTAGTCCGGTCCCTTAGTACCCCAAAATTCGTCTTTAGTTATTTTTTTTTCGATTTTTCTTGAATTGTATTAAAACGATTTTCTCCAGTATTTTCCCTGTATTCTTTCAATTTCTTCAAAAAGTATTTTTCTGATCCAAAAAGTAATTCAAGCCCAACTTTCGAAAGTATTCTATTTCCCGCCAAAATGTATTTTTCTCCCAATTTTTTTTCCATATATTGTATTCGTCCTCTCAGCTTTACCAAGCCAGTTTTCATCGTTCTTTCACTCTCCCCAATTCTAAAATTTTGTTCTGGAAATCTGAAATTTCCACTGCAAAATCTCCTGATTGTATATGTTGAACCCCAGCAGAAAAAAACTTATATACCAAATTGTGTTAGCTCTCTCCTCCTGATATTTATTCTCCAAAAAATCCCTTTCCCTCATCTCTTTCCCATCTACCGGATGATTCTCCTTGACGGAGCCGGCTGAAAAAAGTATCGAAATTCATTTTTGAAATGTTTTTTTTAATTTCAAATTGATTCGTTTTTTGTGTCAATGATGAATGAGGAATGAAAATTATAATTAAAATCGTTTTTTTTTTAGGTATTAGAATTCCACAGTGCGCGTATGGAGCATACTGTAGACTATAAGTATACGGTCAGTGTACTTCATCTATGGAACATAGAAAGTATCCAAATTTCAATATTGCCAACAGTATATGATGTTTGGTATACTGTAGACTATGAGTATGCGGTAAGTGTACTTCTTATATATCAATATTTTAGGGCTAATATGTAATTGAGTATTAAATCATACTACTACATCAACCATAATAGCCAACCATATAACTTGATCTTGAAACTGCAATTGTCGTGTTTCCTATAGTTATCCCTCCGGAAGGACCCT</canonical>
            <polymorphic>AAAAACTACTCCAAATCTCTTCTTCTAGCTCTTTCCATGATTTTTGATTTTTCAATTTTTCCCCCCATTTGTCTACCTCATAGAATTCTCCCCTTCTTTTTCCGAGTTCTTTTTAGTCCGGTCCCTTAGTACCCCAAAATTCGTCTTTAGTTATTTTTTTTTCGATTTTTCTTGAATTGTATTAAAACGATTTTCTCCAGTATTTTCCCTGTATTCTTTCAATTTCTTCAAAAAGTATTTTTCTGATCCAAAAAGTAATTCAAGCCCAACTTTCGAAAGTATTCTATTTCCCGCCAAAATGTATTTTTCTCCCAATTTTTTTTCCATATATTGTATTCGTCCTCTCAGCTTTACCAAGCCAGTTTTCATCGTTCTTTCACTCTCCCCAATTCTAAAATTTTGTTCTGGAAATCTGAAATTTCCACTGCAAAATCTCCTGATTGTATATGTTGAACCCCAGCAGAAAAAAACTTATATACCAAATTGTGTTAGCTCTCTCYTCCTGATATTTATTCTCCAAAAAATCCCTTTCCCTCATCTCTTTCCCATCTACCGGATGATTCTCCTTGACGGAGCCGGCTGAAAAAAGTATCGAAATTCATTTTTGAAATGTTTTTTTTAATTTCAAATTGATTCGTTTTTTGTGTCAATGATGAATGAGGAATGAAAATTATAATTAAAATCGTTTTTTTTTTAGGTATTAGAATTCCACAGTGCGCGTATGGAGCATACTGTAGACTATAAGTATACGGTCAGTGTACTTCATCTATGGAACATAGAAAGTATCCAAATTTCAATATTGCCAACAGTATATGATGTTTGGTATACTGTAGACTATGAGTATGCGGTAAGTGTACTTCTTATATATCAATATTTTAGGGCTAATATGTAATTGAGTATTAAATCATACTACTACATCAACCATAATAGCCAACCATATAACTTGATCTTGAAACTGCAATTGTCGTGTTTCCTATAGTTATCCCTCCGGAAGGACCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTATTTTTCTCCCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>GGTAGATGGGAAAGAGATGAG</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>AATGTATTTTTCTCCCAATTTTTTTTCCATATATTGTATTCGTCCTCTCAGCTTTACCAAGCCAGTTTTCATCGTTCTTTCACTCTCCCCAATTCTAAAATTTTGTTCTGGAAATCTGAAATTTCCACTGCAAAATCTCCTGATTGTATATGTTGAACCCCAGCAGAAAAAAACTTATATACCAAATTGTGTTAGCTCTCTCCTCCTGATATTTATTCTCCAAAAAATCCCTTTCCCTCATCTCTTTCCCATCTACC</canonical_amplicon>
		<polymorphic_amplicon>AATGTATTTTTCTCCCAATTTTTTTTCCATATATTGTATTCGTCCTCTCAGCTTTACCAAGCCAGTTTTCATCGTTCTTTCACTCTCCCCAATTCTAAAATTTTGTTCTGGAAATCTGAAATTTCCACTGCAAAATCTCCTGATTGTATATGTTGAACCCCAGCAGAAAAAAACTTATATACCAAATTGTGTTAGCTCTCTCYTCCTGATATTTATTCTCCAAAAAATCCCTTTCCCTCATCTCTTTCCCATCTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24002</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>28109</contig_pos>
        <strand>+</strand>
        <context>CCATCTACCG[G/T]ATGATTCTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATATTTATTCTCCAAAAAATCCCTTTCCCTCATCTCTTTCCCATCTACCG</left_flank>
        <right_flank>ATGATTCTCCTTGACGGAGCCGGCTGAAAAAAGTATCGAAATTCATTTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCCCCCCATTTGTCTACCTCATAGAATTCTCCCCTTCTTTTTCCGAGTTCTTTTTAGTCCGGTCCCTTAGTACCCCAAAATTCGTCTTTAGTTATTTTTTTTTCGATTTTTCTTGAATTGTATTAAAACGATTTTCTCCAGTATTTTCCCTGTATTCTTTCAATTTCTTCAAAAAGTATTTTTCTGATCCAAAAAGTAATTCAAGCCCAACTTTCGAAAGTATTCTATTTCCCGCCAAAATGTATTTTTCTCCCAATTTTTTTTCCATATATTGTATTCGTCCTCTCAGCTTTACCAAGCCAGTTTTCATCGTTCTTTCACTCTCCCCAATTCTAAAATTTTGTTCTGGAAATCTGAAATTTCCACTGCAAAATCTCCTGATTGTATATGTTGAACCCCAGCAGAAAAAAACTTATATACCAAATTGTGTTAGCTCTCTCCTCCTGATATTTATTCTCCAAAAAATCCCTTTCCCTCATCTCTTTCCCATCTACCGGATGATTCTCCTTGACGGAGCCGGCTGAAAAAAGTATCGAAATTCATTTTTGAAATGTTTTTTTTAATTTCAAATTGATTCGTTTTTTGTGTCAATGATGAATGAGGAATGAAAATTATAATTAAAATCGTTTTTTTTTTAGGTATTAGAATTCCACAGTGCGCGTATGGAGCATACTGTAGACTATAAGTATACGGTCAGTGTACTTCATCTATGGAACATAGAAAGTATCCAAATTTCAATATTGCCAACAGTATATGATGTTTGGTATACTGTAGACTATGAGTATGCGGTAAGTGTACTTCTTATATATCAATATTTTAGGGCTAATATGTAATTGAGTATTAAATCATACTACTACATCAACCATAATAGCCAACCATATAACTTGATCTTGAAACTGCAATTGTCGTGTTTCCTATAGTTATCCCTCCGGAAGGACCCTCCGCTGATCCCTTTTTTGTACTCACCGACATCAAAAGGATATCGGTACCGATAAAG</canonical>
            <polymorphic>TTTTCCCCCCATTTGTCTACCTCATAGAATTCTCCCCTTCTTTTTCCGAGTTCTTTTTAGTCCGGTCCCTTAGTACCCCAAAATTCGTCTTTAGTTATTTTTTTTTCGATTTTTCTTGAATTGTATTAAAACGATTTTCTCCAGTATTTTCCCTGTATTCTTTCAATTTCTTCAAAAAGTATTTTTCTGATCCAAAAAGTAATTCAAGCCCAACTTTCGAAAGTATTCTATTTCCCGCCAAAATGTATTTTTCTCCCAATTTTTTTTCCATATATTGTATTCGTCCTCTCAGCTTTACCAAGCCAGTTTTCATCGTTCTTTCACTCTCCCCAATTCTAAAATTTTGTTCTGGAAATCTGAAATTTCCACTGCAAAATCTCCTGATTGTATATGTTGAACCCCAGCAGAAAAAAACTTATATACCAAATTGTGTTAGCTCTCTCCTCCTGATATTTATTCTCCAAAAAATCCCTTTCCCTCATCTCTTTCCCATCTACCGKATGATTCTCCTTGACGGAGCCGGCTGAAAAAAGTATCGAAATTCATTTTTGAAATGTTTTTTTTAATTTCAAATTGATTCGTTTTTTGTGTCAATGATGAATGAGGAATGAAAATTATAATTAAAATCGTTTTTTTTTTAGGTATTAGAATTCCACAGTGCGCGTATGGAGCATACTGTAGACTATAAGTATACGGTCAGTGTACTTCATCTATGGAACATAGAAAGTATCCAAATTTCAATATTGCCAACAGTATATGATGTTTGGTATACTGTAGACTATGAGTATGCGGTAAGTGTACTTCTTATATATCAATATTTTAGGGCTAATATGTAATTGAGTATTAAATCATACTACTACATCAACCATAATAGCCAACCATATAACTTGATCTTGAAACTGCAATTGTCGTGTTTCCTATAGTTATCCCTCCGGAAGGACCCTCCGCTGATCCCTTTTTTGTACTCACCGACATCAAAAGGATATCGGTACCGATAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>435 435 69 61</canonical_bands>
                <polymorphic_bands>870 69 61</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>496 439 65</canonical_bands>
                <polymorphic_bands>935 65</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>435 412 68 62 23</canonical_bands>
                <polymorphic_bands>458 412 68 62</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACCAAATTGTGTTAGCTCTCTC</pcr_primer_p1>
		<pcr_primer_p2>ACTGTGGAATTCTAATACCTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TACCAAATTGTGTTAGCTCTCTCCTCCTGATATTTATTCTCCAAAAAATCCCTTTCCCTCATCTCTTTCCCATCTACCGGATGATTCTCCTTGACGGAGCCGGCTGAAAAAAGTATCGAAATTCATTTTTGAAATGTTTTTTTTAATTTCAAATTGATTCGTTTTTTGTGTCAATGATGAATGAGGAATGAAAATTATAATTAAAATCGTTTTTTTTTTAGGTATTAGAATTCCACAGT</canonical_amplicon>
		<polymorphic_amplicon>TACCAAATTGTGTTAGCTCTCTCCTCCTGATATTTATTCTCCAAAAAATCCCTTTCCCTCATCTCTTTCCCATCTACCGKATGATTCTCCTTGACGGAGCCGGCTGAAAAAAGTATCGAAATTCATTTTTGAAATGTTTTTTTTAATTTCAAATTGATTCGTTTTTTGTGTCAATGATGAATGAGGAATGAAAATTATAATTAAAATCGTTTTTTTTTTAGGTATTAGAATTCCACAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24003</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>30849</contig_pos>
        <strand></strand>
        <context>atagcgcata[G/T]tcggtggaga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAGTCTGAATACGGTAGGCACCTCGGAGCGACAAGCCTAAATAGCGCATA</left_flank>
        <right_flank>TCGGTGGAGACGCAGAGAAATATTTCGATTAACTGTCTGCGTCTCAACTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTCGGAGTTTCTTTGGAGTTAGGGTATGAATTCTACCGTGACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCAGTTTCCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCGCCCCCACAAGTTCAGCTCCTCGAGGGTCTTTTTTAAAAGGAATTTCGAGAACATTATTTTTTTCATGTCTCCCCACCTTTAAAAACGAAAATTTCAACCTCTGAATATTGCTCAATTTTGCTCTTTTCGAGGTGGTGTACTGTTAAATCGATCACATACAAGATTTGAACCTATTTCTATCGATTTCAGTTAATTTCAAGCAATTTTTAAGAAGTTAGGGATTGTCAAAGTATTATTATTGTTGTGCGAAAAAATTGGAGCGAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGGAGCGACAAGCCTAAATAGCGCATAGTCGGTGGAGACGCAGAGAAATATTTCGATTAACTGTCTGCGTCTCAACTCCAATTTTTTCGGACAACAATAATAACAACAATCAGATTTTGGAGATTTTGTGAGCGCAAAGACGAAATTGGGCTGTCAAATTTTGTCAGAATGCTATTCTTATCGTTTCTGAATAATTGGAATATTTTTTCGCACTTTTCAAAAAATTTTCAACAAATCATTTTCAAAGTGTGGGGGGACTTTTTTTTTGAAAATGTTCAAAAACTATTTCAGAAGAAAGAAAAATGTTCAAAAATGTGTTTCGCACTCAAGAAAATCCTGAACAATTAATTTTGAGCCTCGAAAAAAGCATGTTTCTGGTCAAAATTTAGCACATTATTCCGTATTCCTCCGTATTCTGTCCGTTCGCGAACTCCCTTATTCCCGCNAANATCTTTGCTTTTTTGATATTCACTCTTCATTTGTCAGTAGGAAATGTAGGAAATTGAAACAAAAAAACTGTTTCTCTGG</canonical>
            <polymorphic>ATTTTTCGGAGTTTCTTTGGAGTTAGGGTATGAATTCTACCGTGACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCAGTTTCCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCGCCCCCACAAGTTCAGCTCCTCGAGGGTCTTTTTTAAAAGGAATTTCGAGAACATTATTTTTTTCATGTCTCCCCACCTTTAAAAACGAAAATTTCAACCTCTGAATATTGCTCAATTTTGCTCTTTTCGAGGTGGTGTACTGTTAAATCGATCACATACAAGATTTGAACCTATTTCTATCGATTTCAGTTAATTTCAAGCAATTTTTAAGAAGTTAGGGATTGTCAAAGTATTATTATTGTTGTGCGAAAAAATTGGAGCGAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGGAGCGACAAGCCTAAATAGCGCATAKTCGGTGGAGACGCAGAGAAATATTTCGATTAACTGTCTGCGTCTCAACTCCAATTTTTTCGGACAACAATAATAACAACAATCAGATTTTGGAGATTTTGTGAGCGCAAAGACGAAATTGGGCTGTCAAATTTTGTCAGAATGCTATTCTTATCGTTTCTGAATAATTGGAATATTTTTTCGCACTTTTCAAAAAATTTTCAACAAATCATTTTCAAAGTGTGGGGGGACTTTTTTTTTGAAAATGTTCAAAAACTATTTCAGAAGAAAGAAAAATGTTCAAAAATGTGTTTCGCACTCAAGAAAATCCTGAACAATTAATTTTGAGCCTCGAAAAAAGCATGTTTCTGGTCAAAATTTAGCACATTATTCCGTATTCCTCCGTATTCTGTCCGTTCGCGAACTCCCTTATTCCCGCNAANATCTTTGCTTTTTTGATATTCACTCTTCATTTGTCAGTAGGAAATGTAGGAAATTGAAACAAAAAAACTGTTTCTCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAGTTAGGGATTGTCAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GAATACGGAATAATGTGCTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>498</pcr_amplicon_size>
		<canonical_amplicon>AAGAAGTTAGGGATTGTCAAAGTATTATTATTGTTGTGCGAAAAAATTGGAGCGAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGGAGCGACAAGCCTAAATAGCGCATAGTCGGTGGAGACGCAGAGAAATATTTCGATTAACTGTCTGCGTCTCAACTCCAATTTTTTCGGACAACAATAATAACAACAATCAGATTTTGGAGATTTTGTGAGCGCAAAGACGAAATTGGGCTGTCAAATTTTGTCAGAATGCTATTCTTATCGTTTCTGAATAATTGGAATATTTTTTCGCACTTTTCAAAAAATTTTCAACAAATCATTTTCAAAGTGTGGGGGGACTTTTTTTTTGAAAATGTTCAAAAACTATTTCAGAAGAAAGAAAAATGTTCAAAAATGTGTTTCGCACTCAAGAAAATCCTGAACAATTAATTTTGAGCCTCGAAAAAAGCATGTTTCTGGTCAAAATTTAGCACATTATTCCGTATTC</canonical_amplicon>
		<polymorphic_amplicon>AAGAAGTTAGGGATTGTCAAAGTATTATTATTGTTGTGCGAAAAAATTGGAGCGAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGGAGCGACAAGCCTAAATAGCGCATAKTCGGTGGAGACGCAGAGAAATATTTCGATTAACTGTCTGCGTCTCAACTCCAATTTTTTCGGACAACAATAATAACAACAATCAGATTTTGGAGATTTTGTGAGCGCAAAGACGAAATTGGGCTGTCAAATTTTGTCAGAATGCTATTCTTATCGTTTCTGAATAATTGGAATATTTTTTCGCACTTTTCAAAAAATTTTCAACAAATCATTTTCAAAGTGTGGGGGGACTTTTTTTTTGAAAATGTTCAAAAACTATTTCAGAAGAAAGAAAAATGTTCAAAAATGTGTTTCGCACTCAAGAAAATCCTGAACAATTAATTTTGAGCCTCGAAAAAAGCATGTTTCTGGTCAAAATTTAGCACATTATTCCGTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24004</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>31014</contig_pos>
        <strand></strand>
        <context>gtttctgaat[A/T]attggaayat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATTGGGCTGTCAAATTTTGTCAGAATGCTATTCTTATCGTTTCTGAAT</left_flank>
        <right_flank>ATTGGAATATTTTTTCGCACTTTTCAAAAAATTTTCAACAAATCATTTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCTCGCCCCCACAAGTTCAGCTCCTCGAGGGTCTTTTTTAAAAGGAATTTCGAGAACATTATTTTTTTCATGTCTCCCCACCTTTAAAAACGAAAATTTCAACCTCTGAATATTGCTCAATTTTGCTCTTTTCGAGGTGGTGTACTGTTAAATCGATCACATACAAGATTTGAACCTATTTCTATCGATTTCAGTTAATTTCAAGCAATTTTTAAGAAGTTAGGGATTGTCAAAGTATTATTATTGTTGTGCGAAAAAATTGGAGCGAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGGAGCGACAAGCCTAAATAGCGCATAGTCGGTGGAGACGCAGAGAAATATTTCGATTAACTGTCTGCGTCTCAACTCCAATTTTTTCGGACAACAATAATAACAACAATCAGATTTTGGAGATTTTGTGAGCGCAAAGACGAAATTGGGCTGTCAAATTTTGTCAGAATGCTATTCTTATCGTTTCTGAATAATTGGAATATTTTTTCGCACTTTTCAAAAAATTTTCAACAAATCATTTTCAAAGTGTGGGGGGACTTTTTTTTTGAAAATGTTCAAAAACTATTTCAGAAGAAAGAAAAATGTTCAAAAATGTGTTTCGCACTCAAGAAAATCCTGAACAATTAATTTTGAGCCTCGAAAAAAGCATGTTTCTGGTCAAAATTTAGCACATTATTCCGTATTCCTCCGTATTCTGTCCGTTCGCGAACTCCCTTATTCCCGCNAANATCTTTGCTTTTTTGATATTCACTCTTCATTTGTCAGTAGGAAATGTAGGAAATTGAAACAAAAAAACTGTTTCTCTGGCAGCACAAGGAAAGGGGAATTTTCCTCATAATGATCGGTATAGCATATGTTCCTCTGGTGTTTATATTTTCGAAGAGTCATTATTTATTCATTTTTATTATTAGTTTTTCTTCNNNNNNNNNNNGTTTCATTTTCCGTATTTATTACCTCGATTTCGCGCGTTTT</canonical>
            <polymorphic>ATCCTCGCCCCCACAAGTTCAGCTCCTCGAGGGTCTTTTTTAAAAGGAATTTCGAGAACATTATTTTTTTCATGTCTCCCCACCTTTAAAAACGAAAATTTCAACCTCTGAATATTGCTCAATTTTGCTCTTTTCGAGGTGGTGTACTGTTAAATCGATCACATACAAGATTTGAACCTATTTCTATCGATTTCAGTTAATTTCAAGCAATTTTTAAGAAGTTAGGGATTGTCAAAGTATTATTATTGTTGTGCGAAAAAATTGGAGCGAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGGAGCGACAAGCCTAAATAGCGCATAGTCGGTGGAGACGCAGAGAAATATTTCGATTAACTGTCTGCGTCTCAACTCCAATTTTTTCGGACAACAATAATAACAACAATCAGATTTTGGAGATTTTGTGAGCGCAAAGACGAAATTGGGCTGTCAAATTTTGTCAGAATGCTATTCTTATCGTTTCTGAATWATTGGAATATTTTTTCGCACTTTTCAAAAAATTTTCAACAAATCATTTTCAAAGTGTGGGGGGACTTTTTTTTTGAAAATGTTCAAAAACTATTTCAGAAGAAAGAAAAATGTTCAAAAATGTGTTTCGCACTCAAGAAAATCCTGAACAATTAATTTTGAGCCTCGAAAAAAGCATGTTTCTGGTCAAAATTTAGCACATTATTCCGTATTCCTCCGTATTCTGTCCGTTCGCGAACTCCCTTATTCCCGCNAANATCTTTGCTTTTTTGATATTCACTCTTCATTTGTCAGTAGGAAATGTAGGAAATTGAAACAAAAAAACTGTTTCTCTGGCAGCACAAGGAAAGGGGAATTTTCCTCATAATGATCGGTATAGCATATGTTCCTCTGGTGTTTATATTTTCGAAGAGTCATTATTTATTCATTTTTATTATTAGTTTTTCTTCNNNNNNNNNNNGTTTCATTTTCCGTATTTATTACCTCGATTTCGCGCGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>148 127 120 118 78 64 51 49 47 45 36 36 30 24 13 10 4</canonical_bands>
                <polymorphic_bands>148 127 120 118 78 66 64 51 49 47 45 36 24 13 10 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAAGTTAGGGATTGTCAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GAATACGGAATAATGTGCTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>498</pcr_amplicon_size>
		<canonical_amplicon>AAGAAGTTAGGGATTGTCAAAGTATTATTATTGTTGTGCGAAAAAATTGGAGCGAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGGAGCGACAAGCCTAAATAGCGCATAGTCGGTGGAGACGCAGAGAAATATTTCGATTAACTGTCTGCGTCTCAACTCCAATTTTTTCGGACAACAATAATAACAACAATCAGATTTTGGAGATTTTGTGAGCGCAAAGACGAAATTGGGCTGTCAAATTTTGTCAGAATGCTATTCTTATCGTTTCTGAATAATTGGAATATTTTTTCGCACTTTTCAAAAAATTTTCAACAAATCATTTTCAAAGTGTGGGGGGACTTTTTTTTTGAAAATGTTCAAAAACTATTTCAGAAGAAAGAAAAATGTTCAAAAATGTGTTTCGCACTCAAGAAAATCCTGAACAATTAATTTTGAGCCTCGAAAAAAGCATGTTTCTGGTCAAAATTTAGCACATTATTCCGTATTC</canonical_amplicon>
		<polymorphic_amplicon>AAGAAGTTAGGGATTGTCAAAGTATTATTATTGTTGTGCGAAAAAATTGGAGCGAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGGAGCGACAAGCCTAAATAGCGCATAGTCGGTGGAGACGCAGAGAAATATTTCGATTAACTGTCTGCGTCTCAACTCCAATTTTTTCGGACAACAATAATAACAACAATCAGATTTTGGAGATTTTGTGAGCGCAAAGACGAAATTGGGCTGTCAAATTTTGTCAGAATGCTATTCTTATCGTTTCTGAATWATTGGAATATTTTTTCGCACTTTTCAAAAAATTTTCAACAAATCATTTTCAAAGTGTGGGGGGACTTTTTTTTTGAAAATGTTCAAAAACTATTTCAGAAGAAAGAAAAATGTTCAAAAATGTGTTTCGCACTCAAGAAAATCCTGAACAATTAATTTTGAGCCTCGAAAAAAGCATGTTTCTGGTCAAAATTTAGCACATTATTCCGTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24005</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>31022</contig_pos>
        <strand></strand>
        <context>atwattggaa[T/C]attttttcgc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTGTCAAATTTTGTCAGAATGCTATTCTTATCGTTTCTGAATAATTGGAA</left_flank>
        <right_flank>ATTTTTTCGCACTTTTCAAAAAATTTTCAACAAATCATTTTCAAAGTGTG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCCACAAGTTCAGCTCCTCGAGGGTCTTTTTTAAAAGGAATTTCGAGAACATTATTTTTTTCATGTCTCCCCACCTTTAAAAACGAAAATTTCAACCTCTGAATATTGCTCAATTTTGCTCTTTTCGAGGTGGTGTACTGTTAAATCGATCACATACAAGATTTGAACCTATTTCTATCGATTTCAGTTAATTTCAAGCAATTTTTAAGAAGTTAGGGATTGTCAAAGTATTATTATTGTTGTGCGAAAAAATTGGAGCGAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGGAGCGACAAGCCTAAATAGCGCATAGTCGGTGGAGACGCAGAGAAATATTTCGATTAACTGTCTGCGTCTCAACTCCAATTTTTTCGGACAACAATAATAACAACAATCAGATTTTGGAGATTTTGTGAGCGCAAAGACGAAATTGGGCTGTCAAATTTTGTCAGAATGCTATTCTTATCGTTTCTGAATAATTGGAATATTTTTTCGCACTTTTCAAAAAATTTTCAACAAATCATTTTCAAAGTGTGGGGGGACTTTTTTTTTGAAAATGTTCAAAAACTATTTCAGAAGAAAGAAAAATGTTCAAAAATGTGTTTCGCACTCAAGAAAATCCTGAACAATTAATTTTGAGCCTCGAAAAAAGCATGTTTCTGGTCAAAATTTAGCACATTATTCCGTATTCCTCCGTATTCTGTCCGTTCGCGAACTCCCTTATTCCCGCNAANATCTTTGCTTTTTTGATATTCACTCTTCATTTGTCAGTAGGAAATGTAGGAAATTGAAACAAAAAAACTGTTTCTCTGGCAGCACAAGGAAAGGGGAATTTTCCTCATAATGATCGGTATAGCATATGTTCCTCTGGTGTTTATATTTTCGAAGAGTCATTATTTATTCATTTTTATTATTAGTTTTTCTTCNNNNNNNNNNNGTTTCATTTTCCGTATTTATTACCTCGATTTCGCGCGTTTTCAGTAAAT</canonical>
            <polymorphic>CCCCACAAGTTCAGCTCCTCGAGGGTCTTTTTTAAAAGGAATTTCGAGAACATTATTTTTTTCATGTCTCCCCACCTTTAAAAACGAAAATTTCAACCTCTGAATATTGCTCAATTTTGCTCTTTTCGAGGTGGTGTACTGTTAAATCGATCACATACAAGATTTGAACCTATTTCTATCGATTTCAGTTAATTTCAAGCAATTTTTAAGAAGTTAGGGATTGTCAAAGTATTATTATTGTTGTGCGAAAAAATTGGAGCGAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGGAGCGACAAGCCTAAATAGCGCATAGTCGGTGGAGACGCAGAGAAATATTTCGATTAACTGTCTGCGTCTCAACTCCAATTTTTTCGGACAACAATAATAACAACAATCAGATTTTGGAGATTTTGTGAGCGCAAAGACGAAATTGGGCTGTCAAATTTTGTCAGAATGCTATTCTTATCGTTTCTGAATAATTGGAAYATTTTTTCGCACTTTTCAAAAAATTTTCAACAAATCATTTTCAAAGTGTGGGGGGACTTTTTTTTTGAAAATGTTCAAAAACTATTTCAGAAGAAAGAAAAATGTTCAAAAATGTGTTTCGCACTCAAGAAAATCCTGAACAATTAATTTTGAGCCTCGAAAAAAGCATGTTTCTGGTCAAAATTTAGCACATTATTCCGTATTCCTCCGTATTCTGTCCGTTCGCGAACTCCCTTATTCCCGCNAANATCTTTGCTTTTTTGATATTCACTCTTCATTTGTCAGTAGGAAATGTAGGAAATTGAAACAAAAAAACTGTTTCTCTGGCAGCACAAGGAAAGGGGAATTTTCCTCATAATGATCGGTATAGCATATGTTCCTCTGGTGTTTATATTTTCGAAGAGTCATTATTTATTCATTTTTATTATTAGTTTTTCTTCNNNNNNNNNNNGTTTCATTTTCCGTATTTATTACCTCGATTTCGCGCGTTTTCAGTAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 243 152 105</canonical_bands>
                <polymorphic_bands>652 243 105</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAAGTTAGGGATTGTCAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GAATACGGAATAATGTGCTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>498</pcr_amplicon_size>
		<canonical_amplicon>AAGAAGTTAGGGATTGTCAAAGTATTATTATTGTTGTGCGAAAAAATTGGAGCGAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGGAGCGACAAGCCTAAATAGCGCATAGTCGGTGGAGACGCAGAGAAATATTTCGATTAACTGTCTGCGTCTCAACTCCAATTTTTTCGGACAACAATAATAACAACAATCAGATTTTGGAGATTTTGTGAGCGCAAAGACGAAATTGGGCTGTCAAATTTTGTCAGAATGCTATTCTTATCGTTTCTGAATAATTGGAATATTTTTTCGCACTTTTCAAAAAATTTTCAACAAATCATTTTCAAAGTGTGGGGGGACTTTTTTTTTGAAAATGTTCAAAAACTATTTCAGAAGAAAGAAAAATGTTCAAAAATGTGTTTCGCACTCAAGAAAATCCTGAACAATTAATTTTGAGCCTCGAAAAAAGCATGTTTCTGGTCAAAATTTAGCACATTATTCCGTATTC</canonical_amplicon>
		<polymorphic_amplicon>AAGAAGTTAGGGATTGTCAAAGTATTATTATTGTTGTGCGAAAAAATTGGAGCGAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGGAGCGACAAGCCTAAATAGCGCATAGTCGGTGGAGACGCAGAGAAATATTTCGATTAACTGTCTGCGTCTCAACTCCAATTTTTTCGGACAACAATAATAACAACAATCAGATTTTGGAGATTTTGTGAGCGCAAAGACGAAATTGGGCTGTCAAATTTTGTCAGAATGCTATTCTTATCGTTTCTGAATAATTGGAAYATTTTTTCGCACTTTTCAAAAAATTTTCAACAAATCATTTTCAAAGTGTGGGGGGACTTTTTTTTTGAAAATGTTCAAAAACTATTTCAGAAGAAAGAAAAATGTTCAAAAATGTGTTTCGCACTCAAGAAAATCCTGAACAATTAATTTTGAGCCTCGAAAAAAGCATGTTTCTGGTCAAAATTTAGCACATTATTCCGTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24006</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>31053</contig_pos>
        <strand></strand>
        <context>aaattttcaa[C/A]aaatcatttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CGTTTCTGAATAATTGGAATATTTTTTCGCACTTTTCAAAAAATTTTCAA</left_flank>
        <right_flank>AAATCATTTTCAAAGTGTGGGGGGACTTTTTTTTTGAAAATGTTCAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAAGGAATTTCGAGAACATTATTTTTTTCATGTCTCCCCACCTTTAAAAACGAAAATTTCAACCTCTGAATATTGCTCAATTTTGCTCTTTTCGAGGTGGTGTACTGTTAAATCGATCACATACAAGATTTGAACCTATTTCTATCGATTTCAGTTAATTTCAAGCAATTTTTAAGAAGTTAGGGATTGTCAAAGTATTATTATTGTTGTGCGAAAAAATTGGAGCGAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGGAGCGACAAGCCTAAATAGCGCATAGTCGGTGGAGACGCAGAGAAATATTTCGATTAACTGTCTGCGTCTCAACTCCAATTTTTTCGGACAACAATAATAACAACAATCAGATTTTGGAGATTTTGTGAGCGCAAAGACGAAATTGGGCTGTCAAATTTTGTCAGAATGCTATTCTTATCGTTTCTGAATAATTGGAATATTTTTTCGCACTTTTCAAAAAATTTTCAACAAATCATTTTCAAAGTGTGGGGGGACTTTTTTTTTGAAAATGTTCAAAAACTATTTCAGAAGAAAGAAAAATGTTCAAAAATGTGTTTCGCACTCAAGAAAATCCTGAACAATTAATTTTGAGCCTCGAAAAAAGCATGTTTCTGGTCAAAATTTAGCACATTATTCCGTATTCCTCCGTATTCTGTCCGTTCGCGAACTCCCTTATTCCCGCNAANATCTTTGCTTTTTTGATATTCACTCTTCATTTGTCAGTAGGAAATGTAGGAAATTGAAACAAAAAAACTGTTTCTCTGGCAGCACAAGGAAAGGGGAATTTTCCTCATAATGATCGGTATAGCATATGTTCCTCTGGTGTTTATATTTTCGAAGAGTCATTATTTATTCATTTTTATTATTAGTTTTTCTTCNNNNNNNNNNNGTTTCATTTTCCGTATTTATTACCTCGATTTCGCGCGTTTTCAGTAAATTTCTTACATCGTCTAAAATAAGTACCGCGTC</canonical>
            <polymorphic>TTAAAAGGAATTTCGAGAACATTATTTTTTTCATGTCTCCCCACCTTTAAAAACGAAAATTTCAACCTCTGAATATTGCTCAATTTTGCTCTTTTCGAGGTGGTGTACTGTTAAATCGATCACATACAAGATTTGAACCTATTTCTATCGATTTCAGTTAATTTCAAGCAATTTTTAAGAAGTTAGGGATTGTCAAAGTATTATTATTGTTGTGCGAAAAAATTGGAGCGAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGGAGCGACAAGCCTAAATAGCGCATAGTCGGTGGAGACGCAGAGAAATATTTCGATTAACTGTCTGCGTCTCAACTCCAATTTTTTCGGACAACAATAATAACAACAATCAGATTTTGGAGATTTTGTGAGCGCAAAGACGAAATTGGGCTGTCAAATTTTGTCAGAATGCTATTCTTATCGTTTCTGAATAATTGGAATATTTTTTCGCACTTTTCAAAAAATTTTCAAMAAATCATTTTCAAAGTGTGGGGGGACTTTTTTTTTGAAAATGTTCAAAAACTATTTCAGAAGAAAGAAAAATGTTCAAAAATGTGTTTCGCACTCAAGAAAATCCTGAACAATTAATTTTGAGCCTCGAAAAAAGCATGTTTCTGGTCAAAATTTAGCACATTATTCCGTATTCCTCCGTATTCTGTCCGTTCGCGAACTCCCTTATTCCCGCNAANATCTTTGCTTTTTTGATATTCACTCTTCATTTGTCAGTAGGAAATGTAGGAAATTGAAACAAAAAAACTGTTTCTCTGGCAGCACAAGGAAAGGGGAATTTTCCTCATAATGATCGGTATAGCATATGTTCCTCTGGTGTTTATATTTTCGAAGAGTCATTATTTATTCATTTTTATTATTAGTTTTTCTTCNNNNNNNNNNNGTTTCATTTTCCGTATTTATTACCTCGATTTCGCGCGTTTTCAGTAAATTTCTTACATCGTCTAAAATAAGTACCGCGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAGTTAGGGATTGTCAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GAATACGGAATAATGTGCTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>498</pcr_amplicon_size>
		<canonical_amplicon>AAGAAGTTAGGGATTGTCAAAGTATTATTATTGTTGTGCGAAAAAATTGGAGCGAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGGAGCGACAAGCCTAAATAGCGCATAGTCGGTGGAGACGCAGAGAAATATTTCGATTAACTGTCTGCGTCTCAACTCCAATTTTTTCGGACAACAATAATAACAACAATCAGATTTTGGAGATTTTGTGAGCGCAAAGACGAAATTGGGCTGTCAAATTTTGTCAGAATGCTATTCTTATCGTTTCTGAATAATTGGAATATTTTTTCGCACTTTTCAAAAAATTTTCAACAAATCATTTTCAAAGTGTGGGGGGACTTTTTTTTTGAAAATGTTCAAAAACTATTTCAGAAGAAAGAAAAATGTTCAAAAATGTGTTTCGCACTCAAGAAAATCCTGAACAATTAATTTTGAGCCTCGAAAAAAGCATGTTTCTGGTCAAAATTTAGCACATTATTCCGTATTC</canonical_amplicon>
		<polymorphic_amplicon>AAGAAGTTAGGGATTGTCAAAGTATTATTATTGTTGTGCGAAAAAATTGGAGCGAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGGAGCGACAAGCCTAAATAGCGCATAGTCGGTGGAGACGCAGAGAAATATTTCGATTAACTGTCTGCGTCTCAACTCCAATTTTTTCGGACAACAATAATAACAACAATCAGATTTTGGAGATTTTGTGAGCGCAAAGACGAAATTGGGCTGTCAAATTTTGTCAGAATGCTATTCTTATCGTTTCTGAATAATTGGAATATTTTTTCGCACTTTTCAAAAAATTTTCAAMAAATCATTTTCAAAGTGTGGGGGGACTTTTTTTTTGAAAATGTTCAAAAACTATTTCAGAAGAAAGAAAAATGTTCAAAAATGTGTTTCGCACTCAAGAAAATCCTGAACAATTAATTTTGAGCCTCGAAAAAAGCATGTTTCTGGTCAAAATTTAGCACATTATTCCGTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24007</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>31137</contig_pos>
        <strand></strand>
        <context>ttcaaaaatg[T/A]gtttcgcact</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTGAAAATGTTCAAAAACTATTTCAGAAGAAAGAAAAATGTTCAAAAATG</left_flank>
        <right_flank>GTTTCGCACTCAAGAAAATCCTGAACAATTAATTTTGAGCCTCGAAAAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGCTCTTTTCGAGGTGGTGTACTGTTAAATCGATCACATACAAGATTTGAACCTATTTCTATCGATTTCAGTTAATTTCAAGCAATTTTTAAGAAGTTAGGGATTGTCAAAGTATTATTATTGTTGTGCGAAAAAATTGGAGCGAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGGAGCGACAAGCCTAAATAGCGCATAGTCGGTGGAGACGCAGAGAAATATTTCGATTAACTGTCTGCGTCTCAACTCCAATTTTTTCGGACAACAATAATAACAACAATCAGATTTTGGAGATTTTGTGAGCGCAAAGACGAAATTGGGCTGTCAAATTTTGTCAGAATGCTATTCTTATCGTTTCTGAATAATTGGAATATTTTTTCGCACTTTTCAAAAAATTTTCAACAAATCATTTTCAAAGTGTGGGGGGACTTTTTTTTTGAAAATGTTCAAAAACTATTTCAGAAGAAAGAAAAATGTTCAAAAATGTGTTTCGCACTCAAGAAAATCCTGAACAATTAATTTTGAGCCTCGAAAAAAGCATGTTTCTGGTCAAAATTTAGCACATTATTCCGTATTCCTCCGTATTCTGTCCGTTCGCGAACTCCCTTATTCCCGCNAANATCTTTGCTTTTTTGATATTCACTCTTCATTTGTCAGTAGGAAATGTAGGAAATTGAAACAAAAAAACTGTTTCTCTGGCAGCACAAGGAAAGGGGAATTTTCCTCATAATGATCGGTATAGCATATGTTCCTCTGGTGTTTATATTTTCGAAGAGTCATTATTTATTCATTTTTATTATTAGTTTTTCTTCNNNNNNNNNNNGTTTCATTTTCCGTATTTATTACCTCGATTTCGCGCGTTTTCAGTAAATTTCTTACATCGTCTAAAATAAGTACCGCGTCTGTAAAGCTTCTGCCAAAATCGGCTCAATAAAACTGTAAATTTCAAATGGTGCAAATTTTAAAGTCATAGTTTTTGAATAAATT</canonical>
            <polymorphic>TTTGCTCTTTTCGAGGTGGTGTACTGTTAAATCGATCACATACAAGATTTGAACCTATTTCTATCGATTTCAGTTAATTTCAAGCAATTTTTAAGAAGTTAGGGATTGTCAAAGTATTATTATTGTTGTGCGAAAAAATTGGAGCGAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGGAGCGACAAGCCTAAATAGCGCATAGTCGGTGGAGACGCAGAGAAATATTTCGATTAACTGTCTGCGTCTCAACTCCAATTTTTTCGGACAACAATAATAACAACAATCAGATTTTGGAGATTTTGTGAGCGCAAAGACGAAATTGGGCTGTCAAATTTTGTCAGAATGCTATTCTTATCGTTTCTGAATAATTGGAATATTTTTTCGCACTTTTCAAAAAATTTTCAACAAATCATTTTCAAAGTGTGGGGGGACTTTTTTTTTGAAAATGTTCAAAAACTATTTCAGAAGAAAGAAAAATGTTCAAAAATGWGTTTCGCACTCAAGAAAATCCTGAACAATTAATTTTGAGCCTCGAAAAAAGCATGTTTCTGGTCAAAATTTAGCACATTATTCCGTATTCCTCCGTATTCTGTCCGTTCGCGAACTCCCTTATTCCCGCNAANATCTTTGCTTTTTTGATATTCACTCTTCATTTGTCAGTAGGAAATGTAGGAAATTGAAACAAAAAAACTGTTTCTCTGGCAGCACAAGGAAAGGGGAATTTTCCTCATAATGATCGGTATAGCATATGTTCCTCTGGTGTTTATATTTTCGAAGAGTCATTATTTATTCATTTTTATTATTAGTTTTTCTTCNNNNNNNNNNNGTTTCATTTTCCGTATTTATTACCTCGATTTCGCGCGTTTTCAGTAAATTTCTTACATCGTCTAAAATAAGTACCGCGTCTGTAAAGCTTCTGCCAAAATCGGCTCAATAAAACTGTAAATTTCAAATGGTGCAAATTTTAAAGTCATAGTTTTTGAATAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>196 96 92 82 80 67 66 62 55 51 37 37 32 18 17 7 3 2</canonical_bands>
                <polymorphic_bands>196 96 92 82 80 73 67 62 55 51 37 37 32 18 17 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAAGTTAGGGATTGTCAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GAATACGGAATAATGTGCTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>498</pcr_amplicon_size>
		<canonical_amplicon>AAGAAGTTAGGGATTGTCAAAGTATTATTATTGTTGTGCGAAAAAATTGGAGCGAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGGAGCGACAAGCCTAAATAGCGCATAGTCGGTGGAGACGCAGAGAAATATTTCGATTAACTGTCTGCGTCTCAACTCCAATTTTTTCGGACAACAATAATAACAACAATCAGATTTTGGAGATTTTGTGAGCGCAAAGACGAAATTGGGCTGTCAAATTTTGTCAGAATGCTATTCTTATCGTTTCTGAATAATTGGAATATTTTTTCGCACTTTTCAAAAAATTTTCAACAAATCATTTTCAAAGTGTGGGGGGACTTTTTTTTTGAAAATGTTCAAAAACTATTTCAGAAGAAAGAAAAATGTTCAAAAATGTGTTTCGCACTCAAGAAAATCCTGAACAATTAATTTTGAGCCTCGAAAAAAGCATGTTTCTGGTCAAAATTTAGCACATTATTCCGTATTC</canonical_amplicon>
		<polymorphic_amplicon>AAGAAGTTAGGGATTGTCAAAGTATTATTATTGTTGTGCGAAAAAATTGGAGCGAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGGAGCGACAAGCCTAAATAGCGCATAGTCGGTGGAGACGCAGAGAAATATTTCGATTAACTGTCTGCGTCTCAACTCCAATTTTTTCGGACAACAATAATAACAACAATCAGATTTTGGAGATTTTGTGAGCGCAAAGACGAAATTGGGCTGTCAAATTTTGTCAGAATGCTATTCTTATCGTTTCTGAATAATTGGAATATTTTTTCGCACTTTTCAAAAAATTTTCAACAAATCATTTTCAAAGTGTGGGGGGACTTTTTTTTTGAAAATGTTCAAAAACTATTTCAGAAGAAAGAAAAATGTTCAAAAATGWGTTTCGCACTCAAGAAAATCCTGAACAATTAATTTTGAGCCTCGAAAAAAGCATGTTTCTGGTCAAAATTTAGCACATTATTCCGTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24008</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>31163</contig_pos>
        <strand></strand>
        <context>aaatcctgaa[C/A]aattaatttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AAGAAAGAAAAATGTTCAAAAATGTGTTTCGCACTCAAGAAAATCCTGAA</left_flank>
        <right_flank>AATTAATTTTGAGCCTCGAAAAAAGCATGTTTCTGGTCAAAATTTAGCAC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAATCGATCACATACAAGATTTGAACCTATTTCTATCGATTTCAGTTAATTTCAAGCAATTTTTAAGAAGTTAGGGATTGTCAAAGTATTATTATTGTTGTGCGAAAAAATTGGAGCGAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGGAGCGACAAGCCTAAATAGCGCATAGTCGGTGGAGACGCAGAGAAATATTTCGATTAACTGTCTGCGTCTCAACTCCAATTTTTTCGGACAACAATAATAACAACAATCAGATTTTGGAGATTTTGTGAGCGCAAAGACGAAATTGGGCTGTCAAATTTTGTCAGAATGCTATTCTTATCGTTTCTGAATAATTGGAATATTTTTTCGCACTTTTCAAAAAATTTTCAACAAATCATTTTCAAAGTGTGGGGGGACTTTTTTTTTGAAAATGTTCAAAAACTATTTCAGAAGAAAGAAAAATGTTCAAAAATGTGTTTCGCACTCAAGAAAATCCTGAACAATTAATTTTGAGCCTCGAAAAAAGCATGTTTCTGGTCAAAATTTAGCACATTATTCCGTATTCCTCCGTATTCTGTCCGTTCGCGAACTCCCTTATTCCCGCNAANATCTTTGCTTTTTTGATATTCACTCTTCATTTGTCAGTAGGAAATGTAGGAAATTGAAACAAAAAAACTGTTTCTCTGGCAGCACAAGGAAAGGGGAATTTTCCTCATAATGATCGGTATAGCATATGTTCCTCTGGTGTTTATATTTTCGAAGAGTCATTATTTATTCATTTTTATTATTAGTTTTTCTTCNNNNNNNNNNNGTTTCATTTTCCGTATTTATTACCTCGATTTCGCGCGTTTTCAGTAAATTTCTTACATCGTCTAAAATAAGTACCGCGTCTGTAAAGCTTCTGCCAAAATCGGCTCAATAAAACTGTAAATTTCAAATGGTGCAAATTTTAAAGTCATAGTTTTTGAATAAATTCTGATCATCCAAACTTACTATTAACA</canonical>
            <polymorphic>TTAAATCGATCACATACAAGATTTGAACCTATTTCTATCGATTTCAGTTAATTTCAAGCAATTTTTAAGAAGTTAGGGATTGTCAAAGTATTATTATTGTTGTGCGAAAAAATTGGAGCGAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGGAGCGACAAGCCTAAATAGCGCATAGTCGGTGGAGACGCAGAGAAATATTTCGATTAACTGTCTGCGTCTCAACTCCAATTTTTTCGGACAACAATAATAACAACAATCAGATTTTGGAGATTTTGTGAGCGCAAAGACGAAATTGGGCTGTCAAATTTTGTCAGAATGCTATTCTTATCGTTTCTGAATAATTGGAATATTTTTTCGCACTTTTCAAAAAATTTTCAACAAATCATTTTCAAAGTGTGGGGGGACTTTTTTTTTGAAAATGTTCAAAAACTATTTCAGAAGAAAGAAAAATGTTCAAAAATGTGTTTCGCACTCAAGAAAATCCTGAAMAATTAATTTTGAGCCTCGAAAAAAGCATGTTTCTGGTCAAAATTTAGCACATTATTCCGTATTCCTCCGTATTCTGTCCGTTCGCGAACTCCCTTATTCCCGCNAANATCTTTGCTTTTTTGATATTCACTCTTCATTTGTCAGTAGGAAATGTAGGAAATTGAAACAAAAAAACTGTTTCTCTGGCAGCACAAGGAAAGGGGAATTTTCCTCATAATGATCGGTATAGCATATGTTCCTCTGGTGTTTATATTTTCGAAGAGTCATTATTTATTCATTTTTATTATTAGTTTTTCTTCNNNNNNNNNNNGTTTCATTTTCCGTATTTATTACCTCGATTTCGCGCGTTTTCAGTAAATTTCTTACATCGTCTAAAATAAGTACCGCGTCTGTAAAGCTTCTGCCAAAATCGGCTCAATAAAACTGTAAATTTCAAATGGTGCAAATTTTAAAGTCATAGTTTTTGAATAAATTCTGATCATCCAAACTTACTATTAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAGTTAGGGATTGTCAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GAATACGGAATAATGTGCTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>498</pcr_amplicon_size>
		<canonical_amplicon>AAGAAGTTAGGGATTGTCAAAGTATTATTATTGTTGTGCGAAAAAATTGGAGCGAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGGAGCGACAAGCCTAAATAGCGCATAGTCGGTGGAGACGCAGAGAAATATTTCGATTAACTGTCTGCGTCTCAACTCCAATTTTTTCGGACAACAATAATAACAACAATCAGATTTTGGAGATTTTGTGAGCGCAAAGACGAAATTGGGCTGTCAAATTTTGTCAGAATGCTATTCTTATCGTTTCTGAATAATTGGAATATTTTTTCGCACTTTTCAAAAAATTTTCAACAAATCATTTTCAAAGTGTGGGGGGACTTTTTTTTTGAAAATGTTCAAAAACTATTTCAGAAGAAAGAAAAATGTTCAAAAATGTGTTTCGCACTCAAGAAAATCCTGAACAATTAATTTTGAGCCTCGAAAAAAGCATGTTTCTGGTCAAAATTTAGCACATTATTCCGTATTC</canonical_amplicon>
		<polymorphic_amplicon>AAGAAGTTAGGGATTGTCAAAGTATTATTATTGTTGTGCGAAAAAATTGGAGCGAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGGAGCGACAAGCCTAAATAGCGCATAGTCGGTGGAGACGCAGAGAAATATTTCGATTAACTGTCTGCGTCTCAACTCCAATTTTTTCGGACAACAATAATAACAACAATCAGATTTTGGAGATTTTGTGAGCGCAAAGACGAAATTGGGCTGTCAAATTTTGTCAGAATGCTATTCTTATCGTTTCTGAATAATTGGAATATTTTTTCGCACTTTTCAAAAAATTTTCAACAAATCATTTTCAAAGTGTGGGGGGACTTTTTTTTTGAAAATGTTCAAAAACTATTTCAGAAGAAAGAAAAATGTTCAAAAATGTGTTTCGCACTCAAGAAAATCCTGAAMAATTAATTTTGAGCCTCGAAAAAAGCATGTTTCTGGTCAAAATTTAGCACATTATTCCGTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24009</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>31196</contig_pos>
        <strand></strand>
        <context>aAGCATGTTT[C/G]TGGTCAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTCAAGAAAATCCTGAACAATTAATTTTGAGCCTCGAAAAAAGCATGTTT</left_flank>
        <right_flank>TGGTCAAAATTTAGCACATTATTCCGTATTCCTCCGTATTCTGTCCGTTC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTATCGATTTCAGTTAATTTCAAGCAATTTTTAAGAAGTTAGGGATTGTCAAAGTATTATTATTGTTGTGCGAAAAAATTGGAGCGAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGGAGCGACAAGCCTAAATAGCGCATAGTCGGTGGAGACGCAGAGAAATATTTCGATTAACTGTCTGCGTCTCAACTCCAATTTTTTCGGACAACAATAATAACAACAATCAGATTTTGGAGATTTTGTGAGCGCAAAGACGAAATTGGGCTGTCAAATTTTGTCAGAATGCTATTCTTATCGTTTCTGAATAATTGGAATATTTTTTCGCACTTTTCAAAAAATTTTCAACAAATCATTTTCAAAGTGTGGGGGGACTTTTTTTTTGAAAATGTTCAAAAACTATTTCAGAAGAAAGAAAAATGTTCAAAAATGTGTTTCGCACTCAAGAAAATCCTGAACAATTAATTTTGAGCCTCGAAAAAAGCATGTTTCTGGTCAAAATTTAGCACATTATTCCGTATTCCTCCGTATTCTGTCCGTTCGCGAACTCCCTTATTCCCGCNAANATCTTTGCTTTTTTGATATTCACTCTTCATTTGTCAGTAGGAAATGTAGGAAATTGAAACAAAAAAACTGTTTCTCTGGCAGCACAAGGAAAGGGGAATTTTCCTCATAATGATCGGTATAGCATATGTTCCTCTGGTGTTTATATTTTCGAAGAGTCATTATTTATTCATTTTTATTATTAGTTTTTCTTCNNNNNNNNNNNGTTTCATTTTCCGTATTTATTACCTCGATTTCGCGCGTTTTCAGTAAATTTCTTACATCGTCTAAAATAAGTACCGCGTCTGTAAAGCTTCTGCCAAAATCGGCTCAATAAAACTGTAAATTTCAAATGGTGCAAATTTTAAAGTCATAGTTTTTGAATAAATTCTGATCATCCAAACTTACTATTAACAAAAATAACATCTCCAAAATTTTCATAGTTTCGT</canonical>
            <polymorphic>TCTATCGATTTCAGTTAATTTCAAGCAATTTTTAAGAAGTTAGGGATTGTCAAAGTATTATTATTGTTGTGCGAAAAAATTGGAGCGAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGGAGCGACAAGCCTAAATAGCGCATAGTCGGTGGAGACGCAGAGAAATATTTCGATTAACTGTCTGCGTCTCAACTCCAATTTTTTCGGACAACAATAATAACAACAATCAGATTTTGGAGATTTTGTGAGCGCAAAGACGAAATTGGGCTGTCAAATTTTGTCAGAATGCTATTCTTATCGTTTCTGAATAATTGGAATATTTTTTCGCACTTTTCAAAAAATTTTCAACAAATCATTTTCAAAGTGTGGGGGGACTTTTTTTTTGAAAATGTTCAAAAACTATTTCAGAAGAAAGAAAAATGTTCAAAAATGTGTTTCGCACTCAAGAAAATCCTGAACAATTAATTTTGAGCCTCGAAAAAAGCATGTTTSTGGTCAAAATTTAGCACATTATTCCGTATTCCTCCGTATTCTGTCCGTTCGCGAACTCCCTTATTCCCGCNAANATCTTTGCTTTTTTGATATTCACTCTTCATTTGTCAGTAGGAAATGTAGGAAATTGAAACAAAAAAACTGTTTCTCTGGCAGCACAAGGAAAGGGGAATTTTCCTCATAATGATCGGTATAGCATATGTTCCTCTGGTGTTTATATTTTCGAAGAGTCATTATTTATTCATTTTTATTATTAGTTTTTCTTCNNNNNNNNNNNGTTTCATTTTCCGTATTTATTACCTCGATTTCGCGCGTTTTCAGTAAATTTCTTACATCGTCTAAAATAAGTACCGCGTCTGTAAAGCTTCTGCCAAAATCGGCTCAATAAAACTGTAAATTTCAAATGGTGCAAATTTTAAAGTCATAGTTTTTGAATAAATTCTGATCATCCAAACTTACTATTAACAAAAATAACATCTCCAAAATTTTCATAGTTTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAGTTAGGGATTGTCAAAGT</pcr_primer_p1>
		<pcr_primer_p2>CAAATGAAGAGTGAATATCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>574</pcr_amplicon_size>
		<canonical_amplicon>AAGAAGTTAGGGATTGTCAAAGTATTATTATTGTTGTGCGAAAAAATTGGAGCGAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGGAGCGACAAGCCTAAATAGCGCATAGTCGGTGGAGACGCAGAGAAATATTTCGATTAACTGTCTGCGTCTCAACTCCAATTTTTTCGGACAACAATAATAACAACAATCAGATTTTGGAGATTTTGTGAGCGCAAAGACGAAATTGGGCTGTCAAATTTTGTCAGAATGCTATTCTTATCGTTTCTGAATAATTGGAATATTTTTTCGCACTTTTCAAAAAATTTTCAACAAATCATTTTCAAAGTGTGGGGGGACTTTTTTTTTGAAAATGTTCAAAAACTATTTCAGAAGAAAGAAAAATGTTCAAAAATGTGTTTCGCACTCAAGAAAATCCTGAACAATTAATTTTGAGCCTCGAAAAAAGCATGTTTCTGGTCAAAATTTAGCACATTATTCCGTATTCCTCCGTATTCTGTCCGTTCGCGAACTCCCTTATTCCCGCNAANATCTTTGCTTTTTTGATATTCACTCTTCATTTG</canonical_amplicon>
		<polymorphic_amplicon>AAGAAGTTAGGGATTGTCAAAGTATTATTATTGTTGTGCGAAAAAATTGGAGCGAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGGAGCGACAAGCCTAAATAGCGCATAGTCGGTGGAGACGCAGAGAAATATTTCGATTAACTGTCTGCGTCTCAACTCCAATTTTTTCGGACAACAATAATAACAACAATCAGATTTTGGAGATTTTGTGAGCGCAAAGACGAAATTGGGCTGTCAAATTTTGTCAGAATGCTATTCTTATCGTTTCTGAATAATTGGAATATTTTTTCGCACTTTTCAAAAAATTTTCAACAAATCATTTTCAAAGTGTGGGGGGACTTTTTTTTTGAAAATGTTCAAAAACTATTTCAGAAGAAAGAAAAATGTTCAAAAATGTGTTTCGCACTCAAGAAAATCCTGAACAATTAATTTTGAGCCTCGAAAAAAGCATGTTTSTGGTCAAAATTTAGCACATTATTCCGTATTCCTCCGTATTCTGTCCGTTCGCGAACTCCCTTATTCCCGCNAANATCTTTGCTTTTTTGATATTCACTCTTCATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24010</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>68363</contig_pos>
        <strand></strand>
        <context>ACGATCCGTT[A/T]GTTTCGCTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATATCGAACCGGAATCTTGCAATGCTCCTTCATTTCGTAACGATCCGTT</left_flank>
        <right_flank>GTTTCGCTAGTCCGAAATCAGAAACTTTTGGCTGAAAATTTGTTTTCGAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTATAAATGTTTCAGAATTTAAGAATTTTTAAAAGAATTCTGAAAATAAAACAGCCTAAACAAAATCTTTATTCAGAGAAAAAAACATTGATTTAAAACTGATAGAAAGAGTTCATTTAGCCGATTTTTCAACTTTTTCCACACATTGAACAATCCCTGTCATTGAACATCGATTCTCTGGATCCGGAACAAAAACCTTTTCAGCCACATATTTTCGAAGTGAATCTGGTGCCGAACTCGACAATTTTAGAAATTCTCTCTTCTTGACCTGCAGAAAATCAATGTTTCGATTTTTGATCTAATTAAAACCTGAGCCCGAATCGTTTGTGCATTTTTCCCGTCATGCGGTTGCTGTCCATTCTCAAAAATCTCCCAAATGACGCATCCAAATGAGAAGACGTCGGTTTTCGGTGTGAACACAAACAGCTCTAAGGTCTCTGGGGCCAAATATCGAACCGGAATCTTGCAATGCTCCTTCATTTCGTAACGATCCGTTAGTTTCGCTAGTCCGAAATCAGAAACTTTTGGCTGAAAATTTGTTTTCGATTTCAAGAAGATCAGGAATTATGGGATTGAATATATTTTCGATGAGATTCTGTTAGGAAAAATGAAAAATATTATTCTGCTACGAAAAATAAAAGCTGTGGAAGAGAAACCAGAGTTGCCTTGTAAGGAGGTCCTACAAGGAAAACTACAGTAACCTAAAAATATTTGGACTTTTATCTTGATTTTCGGTTTTTCAGTCAATTTTCGAACAGTTTTTGAATACTGTTTTGATGTTAACTTTTATAAATTTGAGACTCCATCTAACAAACTGGTTTCGTTGTATTGTGACACCTAGAGCTTTAAAATGACTATACTAATGACCCACTTCCCAGAATTTTGAACTTTCTGACCCTACATGCACCTTTAAAGTCGAAAAACCAAAATGGGCGGATCCTAGTCGTGTTTATACTCATTTTGAAGCTCTCCGTGGTGCACCAAGTTTGTAAAATTA</canonical>
            <polymorphic>ATTCTATAAATGTTTCAGAATTTAAGAATTTTTAAAAGAATTCTGAAAATAAAACAGCCTAAACAAAATCTTTATTCAGAGAAAAAAACATTGATTTAAAACTGATAGAAAGAGTTCATTTAGCCGATTTTTCAACTTTTTCCACACATTGAACAATCCCTGTCATTGAACATCGATTCTCTGGATCCGGAACAAAAACCTTTTCAGCCACATATTTTCGAAGTGAATCTGGTGCCGAACTCGACAATTTTAGAAATTCTCTCTTCTTGACCTGCAGAAAATCAATGTTTCGATTTTTGATCTAATTAAAACCTGAGCCCGAATCGTTTGTGCATTTTTCCCGTCATGCGGTTGCTGTCCATTCTCAAAAATCTCCCAAATGACGCATCCAAATGAGAAGACGTCGGTTTTCGGTGTGAACACAAACAGCTCTAAGGTCTCTGGGGCCAAATATCGAACCGGAATCTTGCAATGCTCCTTCATTTCGTAACGATCCGTTWGTTTCGCTAGTCCGAAATCAGAAACTTTTGGCTGAAAATTTGTTTTCGATTTCAAGAAGATCAGGAATTATGGGATTGAATATATTTTCGATGAGATTCTGTTAGGAAAAATGAAAAATATTATTCTGCTACGAAAAATAAAAGCTGTGGAAGAGAAACCAGAGTTGCCTTGTAAGGAGGTCCTACAAGGAAAACTACAGTAACCTAAAAATATTTGGACTTTTATCTTGATTTTCGGTTTTTCAGTCAATTTTCGAACAGTTTTTGAATACTGTTTTGATGTTAACTTTTATAAATTTGAGACTCCATCTAACAAACTGGTTTCGTTGTATTGTGACACCTAGAGCTTTAAAATGACTATACTAATGACCCACTTCCCAGAATTTTGAACTTTCTGACCCTACATGCACCTTTAAAGTCGAAAAACCAAAATGGGCGGATCCTAGTCGTGTTTATACTCATTTTGAAGCTCTCCGTGGTGCACCAAGTTTGTAAAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAAATCTCCCAAATGAC</pcr_primer_p1>
		<pcr_primer_p2>TCATTTTTCCTAACAGAATCTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAAAAATCTCCCAAATGACGCATCCAAATGAGAAGACGTCGGTTTTCGGTGTGAACACAAACAGCTCTAAGGTCTCTGGGGCCAAATATCGAACCGGAATCTTGCAATGCTCCTTCATTTCGTAACGATCCGTTAGTTTCGCTAGTCCGAAATCAGAAACTTTTGGCTGAAAATTTGTTTTCGATTTCAAGAAGATCAGGAATTATGGGATTGAATATATTTTCGATGAGATTCTGTTAGGAAAAATGA</canonical_amplicon>
		<polymorphic_amplicon>TCAAAAATCTCCCAAATGACGCATCCAAATGAGAAGACGTCGGTTTTCGGTGTGAACACAAACAGCTCTAAGGTCTCTGGGGCCAAATATCGAACCGGAATCTTGCAATGCTCCTTCATTTCGTAACGATCCGTTWGTTTCGCTAGTCCGAAATCAGAAACTTTTGGCTGAAAATTTGTTTTCGATTTCAAGAAGATCAGGAATTATGGGATTGAATATATTTTCGATGAGATTCTGTTAGGAAAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24011</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>68526</contig_pos>
        <strand></strand>
        <context>gagaaaccag[A/G]gttgccttgt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAAATATTATTCTGCTACGAAAAATAAAAGCTGTGGAAGAGAAACCAG</left_flank>
        <right_flank>GTTGCCTTGTAAGGAGGTCCTACAAGGAAAACTACAGTAACCTAAAAATA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTGAACATCGATTCTCTGGATCCGGAACAAAAACCTTTTCAGCCACATATTTTCGAAGTGAATCTGGTGCCGAACTCGACAATTTTAGAAATTCTCTCTTCTTGACCTGCAGAAAATCAATGTTTCGATTTTTGATCTAATTAAAACCTGAGCCCGAATCGTTTGTGCATTTTTCCCGTCATGCGGTTGCTGTCCATTCTCAAAAATCTCCCAAATGACGCATCCAAATGAGAAGACGTCGGTTTTCGGTGTGAACACAAACAGCTCTAAGGTCTCTGGGGCCAAATATCGAACCGGAATCTTGCAATGCTCCTTCATTTCGTAACGATCCGTTAGTTTCGCTAGTCCGAAATCAGAAACTTTTGGCTGAAAATTTGTTTTCGATTTCAAGAAGATCAGGAATTATGGGATTGAATATATTTTCGATGAGATTCTGTTAGGAAAAATGAAAAATATTATTCTGCTACGAAAAATAAAAGCTGTGGAAGAGAAACCAGAGTTGCCTTGTAAGGAGGTCCTACAAGGAAAACTACAGTAACCTAAAAATATTTGGACTTTTATCTTGATTTTCGGTTTTTCAGTCAATTTTCGAACAGTTTTTGAATACTGTTTTGATGTTAACTTTTATAAATTTGAGACTCCATCTAACAAACTGGTTTCGTTGTATTGTGACACCTAGAGCTTTAAAATGACTATACTAATGACCCACTTCCCAGAATTTTGAACTTTCTGACCCTACATGCACCTTTAAAGTCGAAAAACCAAAATGGGCGGATCCTAGTCGTGTTTATACTCATTTTGAAGCTCTCCGTGGTGCACCAAGTTTGTAAAATTATGTTTATCAACAAAACTTCAAGAAAGAAGAAAGTTAGCAAAAGCGAAATAAACTTTCCTGTACTTTTTACCAAAAATGTTTAATTTCCGACTTTATTGAGAAACTGAAAACTCGAAGAAAAGCGCTGAAAAAAAGATAAAATAAATCCGGGGAATAAACATAT</canonical>
            <polymorphic>CATTGAACATCGATTCTCTGGATCCGGAACAAAAACCTTTTCAGCCACATATTTTCGAAGTGAATCTGGTGCCGAACTCGACAATTTTAGAAATTCTCTCTTCTTGACCTGCAGAAAATCAATGTTTCGATTTTTGATCTAATTAAAACCTGAGCCCGAATCGTTTGTGCATTTTTCCCGTCATGCGGTTGCTGTCCATTCTCAAAAATCTCCCAAATGACGCATCCAAATGAGAAGACGTCGGTTTTCGGTGTGAACACAAACAGCTCTAAGGTCTCTGGGGCCAAATATCGAACCGGAATCTTGCAATGCTCCTTCATTTCGTAACGATCCGTTAGTTTCGCTAGTCCGAAATCAGAAACTTTTGGCTGAAAATTTGTTTTCGATTTCAAGAAGATCAGGAATTATGGGATTGAATATATTTTCGATGAGATTCTGTTAGGAAAAATGAAAAATATTATTCTGCTACGAAAAATAAAAGCTGTGGAAGAGAAACCAGRGTTGCCTTGTAAGGAGGTCCTACAAGGAAAACTACAGTAACCTAAAAATATTTGGACTTTTATCTTGATTTTCGGTTTTTCAGTCAATTTTCGAACAGTTTTTGAATACTGTTTTGATGTTAACTTTTATAAATTTGAGACTCCATCTAACAAACTGGTTTCGTTGTATTGTGACACCTAGAGCTTTAAAATGACTATACTAATGACCCACTTCCCAGAATTTTGAACTTTCTGACCCTACATGCACCTTTAAAGTCGAAAAACCAAAATGGGCGGATCCTAGTCGTGTTTATACTCATTTTGAAGCTCTCCGTGGTGCACCAAGTTTGTAAAATTATGTTTATCAACAAAACTTCAAGAAAGAAGAAAGTTAGCAAAAGCGAAATAAACTTTCCTGTACTTTTTACCAAAAATGTTTAATTTCCGACTTTATTGAGAAACTGAAAACTCGAAGAAAAGCGCTGAAAAAAAGATAAAATAAATCCGGGGAATAAACATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGATTCTGTTAGGAAAAATGA</pcr_primer_p1>
		<pcr_primer_p2>GGTGTCACAATACAACGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAGATTCTGTTAGGAAAAATGAAAAATATTATTCTGCTACGAAAAATAAAAGCTGTGGAAGAGAAACCAGAGTTGCCTTGTAAGGAGGTCCTACAAGGAAAACTACAGTAACCTAAAAATATTTGGACTTTTATCTTGATTTTCGGTTTTTCAGTCAATTTTCGAACAGTTTTTGAATACTGTTTTGATGTTAACTTTTATAAATTTGAGACTCCATCTAACAAACTGGTTTCGTTGTATTGTGACACC</canonical_amplicon>
		<polymorphic_amplicon>TGAGATTCTGTTAGGAAAAATGAAAAATATTATTCTGCTACGAAAAATAAAAGCTGTGGAAGAGAAACCAGRGTTGCCTTGTAAGGAGGTCCTACAAGGAAAACTACAGTAACCTAAAAATATTTGGACTTTTATCTTGATTTTCGGTTTTTCAGTCAATTTTCGAACAGTTTTTGAATACTGTTTTGATGTTAACTTTTATAAATTTGAGACTCCATCTAACAAACTGGTTTCGTTGTATTGTGACACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24012</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>81173</contig_pos>
        <strand>+</strand>
        <context>ACAGGAGAGG[A/G]AAAATAAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTGCCAGTGAGCGTCGTCGAATCGAAACTGGAAAGGATGACAGGAGAGG</left_flank>
        <right_flank>AAAATAAAGAGAAAAGCTAGACATTTTTCTACCAGAATTAGACAAAAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGAGGAAGAAATGAAACTAACAGGAGTGTGATATGATCTGAAAATCTTTCTCTCTTCCAGATGGAAAAAAGGGACTGTTTTGGGTGTTATAGGAAGAGAAATTCAACATTCCATCCAACCGATATATTGCCACACCGTTTAAAACTGAGATTTTTGTTTTTTAAAGGAGAGGAGTACTTAAATTCTTTGGAATCCAAATTTTGGATTTGTTCAGAGAAACAAAAAGAGTAGTGTAAAAACGAAGAGTATTTAATTTAATGAATTCAAAATGACGTGGCAATATACACAAACAGAGAAGAATTTGGGTTTTGAGAGAGAAAAGAAAAAATATTGGAAAATTTATAGAAAATGATAGAGGGGGCGGGGCTTGGGGAGGACAGGGAAAGGAGAAATCACATCGCTCAGTAAAGTTTCGAGGTAGATTACGGTATGGGAAGAATAGGGAAGAGTGCCAGTGAGCGTCGTCGAATCGAAACTGGAAAGGATGACAGGAGAGGAAAAATAAAGAGAAAAGCTAGACATTTTTCTACCAGAATTAGACAAAAAAGGGAACGAACGAAACGAAAAAAAAACAAGGAAAAACCATCAAAAAATTACAGAGAGAAATATCTTCTCAAGATTTTTAAAAAGGCAGGATGCCGGGAATGTGTGGGAAATTTTGATGAAGGAGAGATGCCTTTTTAAAAGGAGCATCGAGAAATTTACAGGGGGCGGGGCGAATAGATAAAGAGGTAGGATTCAAAGGGGGAAAAACAAAACCTGGATGAAAGGAAGAAGAGAGAAAAAAGAAGAAAAAGAGGTAATCAACGGTTTTTCGATATTTCATAATTGGGACGAAAAAAGAGGAAGAGGAAATAGAGACTGAGAAGAGGTGGTATTCGAAATTATTATTACACGGCGTCACTGGGATCAAAATGAAATTTAACGGATAGTGGGGTGCTTGAAAGGGAAAAACAAAAAGAATAACTGAGTAGCAGTTGAGAAGCTGAGGAACTGGG</canonical>
            <polymorphic>GAAGAGGAAGAAATGAAACTAACAGGAGTGTGATATGATCTGAAAATCTTTCTCTCTTCCAGATGGAAAAAAGGGACTGTTTTGGGTGTTATAGGAAGAGAAATTCAACATTCCATCCAACCGATATATTGCCACACCGTTTAAAACTGAGATTTTTGTTTTTTAAAGGAGAGGAGTACTTAAATTCTTTGGAATCCAAATTTTGGATTTGTTCAGAGAAACAAAAAGAGTAGTGTAAAAACGAAGAGTATTTAATTTAATGAATTCAAAATGACGTGGCAATATACACAAACAGAGAAGAATTTGGGTTTTGAGAGAGAAAAGAAAAAATATTGGAAAATTTATAGAAAATGATAGAGGGGGCGGGGCTTGGGGAGGACAGGGAAAGGAGAAATCACATCGCTCAGTAAAGTTTCGAGGTAGATTACGGTATGGGAAGAATAGGGAAGAGTGCCAGTGAGCGTCGTCGAATCGAAACTGGAAAGGATGACAGGAGAGGRAAAATAAAGAGAAAAGCTAGACATTTTTCTACCAGAATTAGACAAAAAAGGGAACGAACGAAACGAAAAAAAAACAAGGAAAAACCATCAAAAAATTACAGAGAGAAATATCTTCTCAAGATTTTTAAAAAGGCAGGATGCCGGGAATGTGTGGGAAATTTTGATGAAGGAGAGATGCCTTTTTAAAAGGAGCATCGAGAAATTTACAGGGGGCGGGGCGAATAGATAAAGAGGTAGGATTCAAAGGGGGAAAAACAAAACCTGGATGAAAGGAAGAAGAGAGAAAAAAGAAGAAAAAGAGGTAATCAACGGTTTTTCGATATTTCATAATTGGGACGAAAAAAGAGGAAGAGGAAATAGAGACTGAGAAGAGGTGGTATTCGAAATTATTATTACACGGCGTCACTGGGATCAAAATGAAATTTAACGGATAGTGGGGTGCTTGAAAGGGAAAAACAAAAAGAATAACTGAGTAGCAGTTGAGAAGCTGAGGAACTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATGGGAAGAATAGGGAAGAG</pcr_primer_p1>
		<pcr_primer_p2>GCATCTCTCCTTCATCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTATGGGAAGAATAGGGAAGAGTGCCAGTGAGCGTCGTCGAATCGAAACTGGAAAGGATGACAGGAGAGGAAAAATAAAGAGAAAAGCTAGACATTTTTCTACCAGAATTAGACAAAAAAGGGAACGAACGAAACGAAAAAAAAACAAGGAAAAACCATCAAAAAATTACAGAGAGAAATATCTTCTCAAGATTTTTAAAAAGGCAGGATGCCGGGAATGTGTGGGAAATTTTGATGAAGGAGAGATGC</canonical_amplicon>
		<polymorphic_amplicon>GTATGGGAAGAATAGGGAAGAGTGCCAGTGAGCGTCGTCGAATCGAAACTGGAAAGGATGACAGGAGAGGRAAAATAAAGAGAAAAGCTAGACATTTTTCTACCAGAATTAGACAAAAAAGGGAACGAACGAAACGAAAAAAAAACAAGGAAAAACCATCAAAAAATTACAGAGAGAAATATCTTCTCAAGATTTTTAAAAAGGCAGGATGCCGGGAATGTGTGGGAAATTTTGATGAAGGAGAGATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24013</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>169246</contig_pos>
        <strand>+</strand>
        <context>GATCAACATA[A/C]AAAAAATMTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAACACCGGTTTCCATAATAGGAAATTGTATGTAAGCGAAGATCAACATA</left_flank>
        <right_flank>AAAAAATATAAGAATCAAATCAGAATTTAGTATTTTGACAATATCTTGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAATCAGATAGATCAATCTGTGTCTAGAACATTTTTCTGTTTTAAAGTTTCGATGAATTCTGAAGAATTTTTTTAATAGTAAATGGGAGTTTCGTTTGGTAATAGTGACTAATCAGAAACCAGAGAAGTTCAGAATCTTGGTTTTTCCGGTCCCAAAGTTTCAGAATGTTTGAAAACTTTTGAACCTGAGGAAGCGGGATTCAAAGATTTTTAGAATTCAAAAAAATCTAAAAGGCCCCTCTAATACAAGTTTTACAGTAAGAAATCCAGGAAATCAATTTTTGAGGTTACGGTAGTTGTCGTGGGACCATCGGTCACAACCACCTGCGTTTCACTTGAATAACTGGAACTTTTTGTACCGGAACAATAGCCTTTGAAATTATTTAAAAGTTCAGATTATGGTAATTGAATATTTTTTATGCTTCGACAACTTCACAAAAACTATACAACACCGGTTTCCATAATAGGAAATTGTATGTAAGCGAAGATCAACATAAAAAAAATATAAGAATCAAATCAGAATTTAGTATTTTGACAATATCTTGTTCCAAACCTATTGATATTCGAGAAGAATCGTTTATTCAGACCAATTGAACAAATTTAAAAAAAACCAAAAAAATTATGAATAGAATCATTTCACCGGTATTTCGAATCGTCGACAAAGTGGACCTAAATCGTATTTACAGAAAAGAGAAAAAGAGAGATTTTACTGTGGTTTCAAAGTGGAAAAATTGATTGGTGGAGGGGGTTCTACAATTGAAGTTAGTGTTTCATTCAAACCCAAATGAGTCGAATTTGGAACTTCTCCATAGATGAAGGCAGGTCTCATATCGACAATCGTTGTCACTGCTCCAACAATCAAAACGATCAGAAGGCCAAGAAGAATTGCTGTGTAGATCGGAACACATGAGAATGGAGGACGCGGATGGAAGTCGGTTCGTTGAATCGCCTTCTTTTTTGGCTTTTTGATTGTCACTGCACATTCCAAATATGAAAT</canonical>
            <polymorphic>AAAAAATCAGATAGATCAATCTGTGTCTAGAACATTTTTCTGTTTTAAAGTTTCGATGAATTCTGAAGAATTTTTTTAATAGTAAATGGGAGTTTCGTTTGGTAATAGTGACTAATCAGAAACCAGAGAAGTTCAGAATCTTGGTTTTTCCGGTCCCAAAGTTTCAGAATGTTTGAAAACTTTTGAACCTGAGGAAGCGGGATTCAAAGATTTTTAGAATTCAAAAAAATCTAAAAGGCCCCTCTAATACAAGTTTTACAGTAAGAAATCCAGGAAATCAATTTTTGAGGTTACGGTAGTTGTCGTGGGACCATCGGTCACAACCACCTGCGTTTCACTTGAATAACTGGAACTTTTTGTACCGGAACAATAGCCTTTGAAATTATTTAAAAGTTCAGATTATGGTAATTGAATATTTTTTATGCTTCGACAACTTCACAAAAACTATACAACACCGGTTTCCATAATAGGAAATTGTATGTAAGCGAAGATCAACATAMAAAAAATATAAGAATCAAATCAGAATTTAGTATTTTGACAATATCTTGTTCCAAACCTATTGATATTCGAGAAGAATCGTTTATTCAGACCAATTGAACAAATTTAAAAAAAACCAAAAAAATTATGAATAGAATCATTTCACCGGTATTTCGAATCGTCGACAAAGTGGACCTAAATCGTATTTACAGAAAAGAGAAAAAGAGAGATTTTACTGTGGTTTCAAAGTGGAAAAATTGATTGGTGGAGGGGGTTCTACAATTGAAGTTAGTGTTTCATTCAAACCCAAATGAGTCGAATTTGGAACTTCTCCATAGATGAAGGCAGGTCTCATATCGACAATCGTTGTCACTGCTCCAACAATCAAAACGATCAGAAGGCCAAGAAGAATTGCTGTGTAGATCGGAACACATGAGAATGGAGGACGCGGATGGAAGTCGGTTCGTTGAATCGCCTTCTTTTTTGGCTTTTTGATTGTCACTGCACATTCCAAATATGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTCACAAAAACTATACAACACC</pcr_primer_p1>
		<pcr_primer_p2>TACGATTTAGGTCCACTTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTCACAAAAACTATACAACACCGGTTTCCATAATAGGAAATTGTATGTAAGCGAAGATCAACATAAAAAAAATATAAGAATCAAATCAGAATTTAGTATTTTGACAATATCTTGTTCCAAACCTATTGATATTCGAGAAGAATCGTTTATTCAGACCAATTGAACAAATTTAAAAAAAACCAAAAAAATTATGAATAGAATCATTTCACCGGTATTTCGAATCGTCGACAAAGTGGACCTAAATCGTA</canonical_amplicon>
		<polymorphic_amplicon>ACTTCACAAAAACTATACAACACCGGTTTCCATAATAGGAAATTGTATGTAAGCGAAGATCAACATAMAAAAAATATAAGAATCAAATCAGAATTTAGTATTTTGACAATATCTTGTTCCAAACCTATTGATATTCGAGAAGAATCGTTTATTCAGACCAATTGAACAAATTTAAAAAAAACCAAAAAAATTATGAATAGAATCATTTCACCGGTATTTCGAATCGTCGACAAAGTGGACCTAAATCGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24014</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>174895</contig_pos>
        <strand></strand>
        <context>ttaaatatat[T/A]ttttgaaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATAT</left_flank>
        <right_flank>TTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTGAAATGGAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTGAAATGGAAGCTTTCAAAAAACTGAAACACTAGAATCTCGTCTTGGAAAAGCAAAACCATGAATGTCCCTGCCAAACCAAGCAACTTTTCGTAATATTTCTCCAACAGAACACCAATCAGAAATAGTCGAAAAATAAAGTTACTTATTTGGCACGGAAAATCCGACGAAAATTGCCATTACTTTAAAATGTCTCTAGAAAAATGTCGGAAATGAAAAACATAGTTTTCAATTTTGGCGGGAATTGAAAAAAAAATTAAGAACCTTCTAGAAGCTTCATAAAATGGACGATGCCTGAGATTTTTTCTCTTTTTGAATTGATTTTTCAAAGTTTTACATCTCTAAAGAAAATTTGCATTGAATCTATGTGAATCTACATTATTTACACACACTTTGATACAGTAAAAATTCTTGGTTGGCGTTCCTTACTAAGAAATTGAGGTCATTATGGAGAATGAGTAC</canonical>
            <polymorphic>GAAAGACAATTTTCATGTGTGATTTGGTTGAGTAATTCGAAGGAATCAAACATTTCAGAAAGTTTTCTTGTATGTTTTAAAAAACATTTGAAAATTCTAGGCCGCCTCAAGAAAACTGTTAGAATTGACATGGAATTTTCAGTTTTGACGAAAATTCAAAAATAGAAGTTCGGAAGCTTCTAGAAGTTTGGAGAAATGGACGATAACTGAGATTCATTCACTTTTTGAAGAAGTGATTTTCCAAAATTTTGCGAAATGGGTAACAAGTTATTGTTGCATGTTATGTGAATCTAGGTCTTTTTATACACACTTTGAAGCAGTAAAAAAATTTAGATGTAGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATATWTTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTGAAATGGAAGCTTTCAAAAAACTGAAACACTAGAATCTCGTCTTGGAAAAGCAAAACCATGAATGTCCCTGCCAAACCAAGCAACTTTTCGTAATATTTCTCCAACAGAACACCAATCAGAAATAGTCGAAAAATAAAGTTACTTATTTGGCACGGAAAATCCGACGAAAATTGCCATTACTTTAAAATGTCTCTAGAAAAATGTCGGAAATGAAAAACATAGTTTTCAATTTTGGCGGGAATTGAAAAAAAAATTAAGAACCTTCTAGAAGCTTCATAAAATGGACGATGCCTGAGATTTTTTCTCTTTTTGAATTGATTTTTCAAAGTTTTACATCTCTAAAGAAAATTTGCATTGAATCTATGTGAATCTACATTATTTACACACACTTTGATACAGTAAAAATTCTTGGTTGGCGTTCCTTACTAAGAAATTGAGGTCATTATGGAGAATGAGTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCCCTTTTTAAGAAATTGGTA</pcr_primer_p1>
		<pcr_primer_p2>GACGAGATTCTAGTGTTTCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATATTTTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTGAAATGGAAGCTTTCAAAAAACTGAAACACTAGAATCTCGTC</canonical_amplicon>
		<polymorphic_amplicon>AGTCCCTTTTTAAGAAATTGGTAACCATTTTGGATGATATGGAGAATGAATACAGTTACAGATTCAGTAAGAATTCTTGCGTCTTCAAGTAGTGCACTCATTGATTAGAAATCTTCTATAATTTACTAGTCAGTCTCCTGAAACCGTTTTTTTTAAATATATWTTTTGAAAAAATAAGTAAAGATGTTTTCCAAAAATATTTTGAAATGGAAGCTTTCAAAAAACTGAAACACTAGAATCTCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24015</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>198964</contig_pos>
        <strand></strand>
        <context>gagaaaatta[A/G]gccaccacaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTAAGGCAATTCAAGATGACGGCATAGGAAATGCATGTTGAGAAAATTA</left_flank>
        <right_flank>GCCACCACAATAGATAACATAGGAAACATCAGAAAAAGTTAAGACACCAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTCTCTTTTCTTCTCTATAGAGAACTCTTTAGATAAATTTCGTTGATTCACTTTATCTCTTTTTTTCACCTCTTTTTTCTTGTTTACTGTTGATTATGTCGAGTGATTCTTTAGAACCAAAAAACCCATTTTTCTTTTTTGCCATGTTTTGTTTCTATAACCAGGTTGTACCCAACTGAATACATTTGCCTCGTTTTGAAACTCAAATTTATGTCCATTTTTAGCTTTATCTGTATAGTATGGCAGTTATCGAGGAGATTGTCGAGGGAGAGGAGGAGCAGTTGGCCAAAGTAGAACATTTGAAAAAAGAGGGAAATGAGTTTTTCGGAAAAGGAGAATTCGAGAAGGCTGATGAGAAATATCAGGTAGGATTTGAAACGACATAGCCTACATGAATTTTCTAGGTCACGTATGGTCCAGGAATGGTCTGTCATTGAAATGAAAAGTTTTAAGGCAATTCAAGATGACGGCATAGGAAATGCATGTTGAGAAAATTAAGCCACCACAATAGATAACATAGGAAACATCAGAAAAAGTTAAGACACCATGGTTAATTAACCTAGAAAACGCATCAGGTGCATGTTGGGCCATTTCTAGACCGTCAACTAAGGTGGCCTAGAAAAAACCATGTTGAGAAAGTTAGGCCACCATGGTAAATAGCCTATTTTCAGGAAGCCATCACCGCCTGTCACCAACGTCAACTGAAATTCAATCGATACTCCTCTCAAATTCTTCAGCAGCACTTATCAAACTTCGAAAATGGGAACATGCAGTAGAAGCAGCCACTAAATCTATTGAGGTCAATTTCAATCAAATTTTAAATTTTAAATTTTCTTATTTTTCAGATCGGAGCCACGAACGAGAAAGCTCTCGAACGACGTGCGTTCGCTTATTCAAATATGTCGGAAAAGTATGAAAATGCGATTGAAGACTACCAAAAACTTCAAGAATCCCTGCCAAAACGCCAAACAGAATTTCAACGAAAAATCGCGGAAATC</canonical>
            <polymorphic>TCTTCTCTTTTCTTCTCTATAGAGAACTCTTTAGATAAATTTCGTTGATTCACTTTATCTCTTTTTTTCACCTCTTTTTTCTTGTTTACTGTTGATTATGTCGAGTGATTCTTTAGAACCAAAAAACCCATTTTTCTTTTTTGCCATGTTTTGTTTCTATAACCAGGTTGTACCCAACTGAATACATTTGCCTCGTTTTGAAACTCAAATTTATGTCCATTTTTAGCTTTATCTGTATAGTATGGCAGTTATCGAGGAGATTGTCGAGGGAGAGGAGGAGCAGTTGGCCAAAGTAGAACATTTGAAAAAAGAGGGAAATGAGTTTTTCGGAAAAGGAGAATTCGAGAAGGCTGATGAGAAATATCAGGTAGGATTTGAAACGACATAGCCTACATGAATTTTCTAGGTCACGTATGGTCCAGGAATGGTCTGTCATTGAAATGAAAAGTTTTAAGGCAATTCAAGATGACGGCATAGGAAATGCATGTTGAGAAAATTARGCCACCACAATAGATAACATAGGAAACATCAGAAAAAGTTAAGACACCATGGTTAATTAACCTAGAAAACGCATCAGGTGCATGTTGGGCCATTTCTAGACCGTCAACTAAGGTGGCCTAGAAAAAACCATGTTGAGAAAGTTAGGCCACCATGGTAAATAGCCTATTTTCAGGAAGCCATCACCGCCTGTCACCAACGTCAACTGAAATTCAATCGATACTCCTCTCAAATTCTTCAGCAGCACTTATCAAACTTCGAAAATGGGAACATGCAGTAGAAGCAGCCACTAAATCTATTGAGGTCAATTTCAATCAAATTTTAAATTTTAAATTTTCTTATTTTTCAGATCGGAGCCACGAACGAGAAAGCTCTCGAACGACGTGCGTTCGCTTATTCAAATATGTCGGAAAAGTATGAAAATGCGATTGAAGACTACCAAAAACTTCAAGAATCCCTGCCAAAACGCCAAACAGAATTTCAACGAAAAATCGCGGAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>226 131 113 107 88 70 63 61 38 30 27 16 15 15</canonical_bands>
                <polymorphic_bands>226 201 131 107 70 63 61 38 30 27 16 15 15</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>451 263 173 46 42 14 7 4</canonical_bands>
                <polymorphic_bands>451 263 173 88 14 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTGAAACGACATAGCCTAC</pcr_primer_p1>
		<pcr_primer_p2>TGATGGCTTCCTGAAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>GATTTGAAACGACATAGCCTACATGAATTTTCTAGGTCACGTATGGTCCAGGAATGGTCTGTCATTGAAATGAAAAGTTTTAAGGCAATTCAAGATGACGGCATAGGAAATGCATGTTGAGAAAATTAAGCCACCACAATAGATAACATAGGAAACATCAGAAAAAGTTAAGACACCATGGTTAATTAACCTAGAAAACGCATCAGGTGCATGTTGGGCCATTTCTAGACCGTCAACTAAGGTGGCCTAGAAAAAACCATGTTGAGAAAGTTAGGCCACCATGGTAAATAGCCTATTTTCAGGAAGCCATCA</canonical_amplicon>
		<polymorphic_amplicon>GATTTGAAACGACATAGCCTACATGAATTTTCTAGGTCACGTATGGTCCAGGAATGGTCTGTCATTGAAATGAAAAGTTTTAAGGCAATTCAAGATGACGGCATAGGAAATGCATGTTGAGAAAATTARGCCACCACAATAGATAACATAGGAAACATCAGAAAAAGTTAAGACACCATGGTTAATTAACCTAGAAAACGCATCAGGTGCATGTTGGGCCATTTCTAGACCGTCAACTAAGGTGGCCTAGAAAAAACCATGTTGAGAAAGTTAGGCCACCATGGTAAATAGCCTATTTTCAGGAAGCCATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24016</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>199011</contig_pos>
        <strand></strand>
        <context>agttaagaca[C/T]yatggttaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAGCCACCACAATAGATAACATAGGAAACATCAGAAAAAGTTAAGACA</left_flank>
        <right_flank>CATGGTTAATTAACCTAGAAAACGCATCAGGTGCATGTTGGGCCATTTCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCACTTTATCTCTTTTTTTCACCTCTTTTTTCTTGTTTACTGTTGATTATGTCGAGTGATTCTTTAGAACCAAAAAACCCATTTTTCTTTTTTGCCATGTTTTGTTTCTATAACCAGGTTGTACCCAACTGAATACATTTGCCTCGTTTTGAAACTCAAATTTATGTCCATTTTTAGCTTTATCTGTATAGTATGGCAGTTATCGAGGAGATTGTCGAGGGAGAGGAGGAGCAGTTGGCCAAAGTAGAACATTTGAAAAAAGAGGGAAATGAGTTTTTCGGAAAAGGAGAATTCGAGAAGGCTGATGAGAAATATCAGGTAGGATTTGAAACGACATAGCCTACATGAATTTTCTAGGTCACGTATGGTCCAGGAATGGTCTGTCATTGAAATGAAAAGTTTTAAGGCAATTCAAGATGACGGCATAGGAAATGCATGTTGAGAAAATTAAGCCACCACAATAGATAACATAGGAAACATCAGAAAAAGTTAAGACACCATGGTTAATTAACCTAGAAAACGCATCAGGTGCATGTTGGGCCATTTCTAGACCGTCAACTAAGGTGGCCTAGAAAAAACCATGTTGAGAAAGTTAGGCCACCATGGTAAATAGCCTATTTTCAGGAAGCCATCACCGCCTGTCACCAACGTCAACTGAAATTCAATCGATACTCCTCTCAAATTCTTCAGCAGCACTTATCAAACTTCGAAAATGGGAACATGCAGTAGAAGCAGCCACTAAATCTATTGAGGTCAATTTCAATCAAATTTTAAATTTTAAATTTTCTTATTTTTCAGATCGGAGCCACGAACGAGAAAGCTCTCGAACGACGTGCGTTCGCTTATTCAAATATGTCGGAAAAGTATGAAAATGCGATTGAAGACTACCAAAAACTTCAAGAATCCCTGCCAAAACGCCAAACAGAATTTCAACGAAAAATCGCGGAAATCAATGAAAAAATCACTGCCCGGAATGAGGCAATGAAGGCGGATATAAT</canonical>
            <polymorphic>ATTCACTTTATCTCTTTTTTTCACCTCTTTTTTCTTGTTTACTGTTGATTATGTCGAGTGATTCTTTAGAACCAAAAAACCCATTTTTCTTTTTTGCCATGTTTTGTTTCTATAACCAGGTTGTACCCAACTGAATACATTTGCCTCGTTTTGAAACTCAAATTTATGTCCATTTTTAGCTTTATCTGTATAGTATGGCAGTTATCGAGGAGATTGTCGAGGGAGAGGAGGAGCAGTTGGCCAAAGTAGAACATTTGAAAAAAGAGGGAAATGAGTTTTTCGGAAAAGGAGAATTCGAGAAGGCTGATGAGAAATATCAGGTAGGATTTGAAACGACATAGCCTACATGAATTTTCTAGGTCACGTATGGTCCAGGAATGGTCTGTCATTGAAATGAAAAGTTTTAAGGCAATTCAAGATGACGGCATAGGAAATGCATGTTGAGAAAATTAAGCCACCACAATAGATAACATAGGAAACATCAGAAAAAGTTAAGACAYCATGGTTAATTAACCTAGAAAACGCATCAGGTGCATGTTGGGCCATTTCTAGACCGTCAACTAAGGTGGCCTAGAAAAAACCATGTTGAGAAAGTTAGGCCACCATGGTAAATAGCCTATTTTCAGGAAGCCATCACCGCCTGTCACCAACGTCAACTGAAATTCAATCGATACTCCTCTCAAATTCTTCAGCAGCACTTATCAAACTTCGAAAATGGGAACATGCAGTAGAAGCAGCCACTAAATCTATTGAGGTCAATTTCAATCAAATTTTAAATTTTAAATTTTCTTATTTTTCAGATCGGAGCCACGAACGAGAAAGCTCTCGAACGACGTGCGTTCGCTTATTCAAATATGTCGGAAAAGTATGAAAATGCGATTGAAGACTACCAAAAACTTCAAGAATCCCTGCCAAAACGCCAAACAGAATTTCAACGAAAAATCGCGGAAATCAATGAAAAAATCACTGCCCGGAATGAGGCAATGAAGGCGGATATAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>500 397 103</canonical_bands>
                <polymorphic_bands>603 397</polymorphic_bands>
            </assay>
            <assay>
                <site>CCATGG</site>
                <isoschizomers>
                    <enzyme>Bsp19I</enzyme>
                    <enzyme>NcoI</enzyme>
                </isoschizomers>
                <canonical_bands>500 397 103</canonical_bands>
                <polymorphic_bands>603 397</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>500 397 103</canonical_bands>
                <polymorphic_bands>603 397</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 397 103</canonical_bands>
                <polymorphic_bands>603 397</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>303 129 94 70 51 43 39 37 35 34 34 34 34 27 18 10 5 3</canonical_bands>
                <polymorphic_bands>303 129 94 73 70 51 43 37 35 34 34 34 27 18 10 5 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTGAAACGACATAGCCTAC</pcr_primer_p1>
		<pcr_primer_p2>TGATGGCTTCCTGAAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>GATTTGAAACGACATAGCCTACATGAATTTTCTAGGTCACGTATGGTCCAGGAATGGTCTGTCATTGAAATGAAAAGTTTTAAGGCAATTCAAGATGACGGCATAGGAAATGCATGTTGAGAAAATTAAGCCACCACAATAGATAACATAGGAAACATCAGAAAAAGTTAAGACACCATGGTTAATTAACCTAGAAAACGCATCAGGTGCATGTTGGGCCATTTCTAGACCGTCAACTAAGGTGGCCTAGAAAAAACCATGTTGAGAAAGTTAGGCCACCATGGTAAATAGCCTATTTTCAGGAAGCCATCA</canonical_amplicon>
		<polymorphic_amplicon>GATTTGAAACGACATAGCCTACATGAATTTTCTAGGTCACGTATGGTCCAGGAATGGTCTGTCATTGAAATGAAAAGTTTTAAGGCAATTCAAGATGACGGCATAGGAAATGCATGTTGAGAAAATTAAGCCACCACAATAGATAACATAGGAAACATCAGAAAAAGTTAAGACAYCATGGTTAATTAACCTAGAAAACGCATCAGGTGCATGTTGGGCCATTTCTAGACCGTCAACTAAGGTGGCCTAGAAAAAACCATGTTGAGAAAGTTAGGCCACCATGGTAAATAGCCTATTTTCAGGAAGCCATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24017</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>199012</contig_pos>
        <strand></strand>
        <context>gttaagacay[C/T]atggttaatt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAGCCACCACAATAGATAACATAGGAAACATCAGAAAAAGTTAAGACAC</left_flank>
        <right_flank>ATGGTTAATTAACCTAGAAAACGCATCAGGTGCATGTTGGGCCATTTCTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCACTTTATCTCTTTTTTTCACCTCTTTTTTCTTGTTTACTGTTGATTATGTCGAGTGATTCTTTAGAACCAAAAAACCCATTTTTCTTTTTTGCCATGTTTTGTTTCTATAACCAGGTTGTACCCAACTGAATACATTTGCCTCGTTTTGAAACTCAAATTTATGTCCATTTTTAGCTTTATCTGTATAGTATGGCAGTTATCGAGGAGATTGTCGAGGGAGAGGAGGAGCAGTTGGCCAAAGTAGAACATTTGAAAAAAGAGGGAAATGAGTTTTTCGGAAAAGGAGAATTCGAGAAGGCTGATGAGAAATATCAGGTAGGATTTGAAACGACATAGCCTACATGAATTTTCTAGGTCACGTATGGTCCAGGAATGGTCTGTCATTGAAATGAAAAGTTTTAAGGCAATTCAAGATGACGGCATAGGAAATGCATGTTGAGAAAATTAAGCCACCACAATAGATAACATAGGAAACATCAGAAAAAGTTAAGACACCATGGTTAATTAACCTAGAAAACGCATCAGGTGCATGTTGGGCCATTTCTAGACCGTCAACTAAGGTGGCCTAGAAAAAACCATGTTGAGAAAGTTAGGCCACCATGGTAAATAGCCTATTTTCAGGAAGCCATCACCGCCTGTCACCAACGTCAACTGAAATTCAATCGATACTCCTCTCAAATTCTTCAGCAGCACTTATCAAACTTCGAAAATGGGAACATGCAGTAGAAGCAGCCACTAAATCTATTGAGGTCAATTTCAATCAAATTTTAAATTTTAAATTTTCTTATTTTTCAGATCGGAGCCACGAACGAGAAAGCTCTCGAACGACGTGCGTTCGCTTATTCAAATATGTCGGAAAAGTATGAAAATGCGATTGAAGACTACCAAAAACTTCAAGAATCCCTGCCAAAACGCCAAACAGAATTTCAACGAAAAATCGCGGAAATCAATGAAAAAATCACTGCCCGGAATGAGGCAATGAAGGCGGATATAATG</canonical>
            <polymorphic>TTCACTTTATCTCTTTTTTTCACCTCTTTTTTCTTGTTTACTGTTGATTATGTCGAGTGATTCTTTAGAACCAAAAAACCCATTTTTCTTTTTTGCCATGTTTTGTTTCTATAACCAGGTTGTACCCAACTGAATACATTTGCCTCGTTTTGAAACTCAAATTTATGTCCATTTTTAGCTTTATCTGTATAGTATGGCAGTTATCGAGGAGATTGTCGAGGGAGAGGAGGAGCAGTTGGCCAAAGTAGAACATTTGAAAAAAGAGGGAAATGAGTTTTTCGGAAAAGGAGAATTCGAGAAGGCTGATGAGAAATATCAGGTAGGATTTGAAACGACATAGCCTACATGAATTTTCTAGGTCACGTATGGTCCAGGAATGGTCTGTCATTGAAATGAAAAGTTTTAAGGCAATTCAAGATGACGGCATAGGAAATGCATGTTGAGAAAATTAAGCCACCACAATAGATAACATAGGAAACATCAGAAAAAGTTAAGACACYATGGTTAATTAACCTAGAAAACGCATCAGGTGCATGTTGGGCCATTTCTAGACCGTCAACTAAGGTGGCCTAGAAAAAACCATGTTGAGAAAGTTAGGCCACCATGGTAAATAGCCTATTTTCAGGAAGCCATCACCGCCTGTCACCAACGTCAACTGAAATTCAATCGATACTCCTCTCAAATTCTTCAGCAGCACTTATCAAACTTCGAAAATGGGAACATGCAGTAGAAGCAGCCACTAAATCTATTGAGGTCAATTTCAATCAAATTTTAAATTTTAAATTTTCTTATTTTTCAGATCGGAGCCACGAACGAGAAAGCTCTCGAACGACGTGCGTTCGCTTATTCAAATATGTCGGAAAAGTATGAAAATGCGATTGAAGACTACCAAAAACTTCAAGAATCCCTGCCAAAACGCCAAACAGAATTTCAACGAAAAATCGCGGAAATCAATGAAAAAATCACTGCCCGGAATGAGGCAATGAAGGCGGATATAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>499 398 103</canonical_bands>
                <polymorphic_bands>602 398</polymorphic_bands>
            </assay>
            <assay>
                <site>CCATGG</site>
                <isoschizomers>
                    <enzyme>Bsp19I</enzyme>
                    <enzyme>NcoI</enzyme>
                </isoschizomers>
                <canonical_bands>499 398 103</canonical_bands>
                <polymorphic_bands>602 398</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>499 398 103</canonical_bands>
                <polymorphic_bands>602 398</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 398 103</canonical_bands>
                <polymorphic_bands>602 398</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>279 248 118 97 91 64 48 33 22</canonical_bands>
                <polymorphic_bands>279 248 118 97 97 91 48 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTGAAACGACATAGCCTAC</pcr_primer_p1>
		<pcr_primer_p2>TGATGGCTTCCTGAAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>GATTTGAAACGACATAGCCTACATGAATTTTCTAGGTCACGTATGGTCCAGGAATGGTCTGTCATTGAAATGAAAAGTTTTAAGGCAATTCAAGATGACGGCATAGGAAATGCATGTTGAGAAAATTAAGCCACCACAATAGATAACATAGGAAACATCAGAAAAAGTTAAGACACCATGGTTAATTAACCTAGAAAACGCATCAGGTGCATGTTGGGCCATTTCTAGACCGTCAACTAAGGTGGCCTAGAAAAAACCATGTTGAGAAAGTTAGGCCACCATGGTAAATAGCCTATTTTCAGGAAGCCATCA</canonical_amplicon>
		<polymorphic_amplicon>GATTTGAAACGACATAGCCTACATGAATTTTCTAGGTCACGTATGGTCCAGGAATGGTCTGTCATTGAAATGAAAAGTTTTAAGGCAATTCAAGATGACGGCATAGGAAATGCATGTTGAGAAAATTAAGCCACCACAATAGATAACATAGGAAACATCAGAAAAAGTTAAGACACYATGGTTAATTAACCTAGAAAACGCATCAGGTGCATGTTGGGCCATTTCTAGACCGTCAACTAAGGTGGCCTAGAAAAAACCATGTTGAGAAAGTTAGGCCACCATGGTAAATAGCCTATTTTCAGGAAGCCATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24018</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>199096</contig_pos>
        <strand></strand>
        <context>aaaaaaccat[G/A]ttgagaaagt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATGTTGGGCCATTTCTAGACCGTCAACTAAGGTGGCCTAGAAAAAACCAT</left_flank>
        <right_flank>TTGAGAAAGTTAGGCCACCATGGTAAATAGCCTATTTTCAGGAAGCCATC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTTTTTTGCCATGTTTTGTTTCTATAACCAGGTTGTACCCAACTGAATACATTTGCCTCGTTTTGAAACTCAAATTTATGTCCATTTTTAGCTTTATCTGTATAGTATGGCAGTTATCGAGGAGATTGTCGAGGGAGAGGAGGAGCAGTTGGCCAAAGTAGAACATTTGAAAAAAGAGGGAAATGAGTTTTTCGGAAAAGGAGAATTCGAGAAGGCTGATGAGAAATATCAGGTAGGATTTGAAACGACATAGCCTACATGAATTTTCTAGGTCACGTATGGTCCAGGAATGGTCTGTCATTGAAATGAAAAGTTTTAAGGCAATTCAAGATGACGGCATAGGAAATGCATGTTGAGAAAATTAAGCCACCACAATAGATAACATAGGAAACATCAGAAAAAGTTAAGACACCATGGTTAATTAACCTAGAAAACGCATCAGGTGCATGTTGGGCCATTTCTAGACCGTCAACTAAGGTGGCCTAGAAAAAACCATGTTGAGAAAGTTAGGCCACCATGGTAAATAGCCTATTTTCAGGAAGCCATCACCGCCTGTCACCAACGTCAACTGAAATTCAATCGATACTCCTCTCAAATTCTTCAGCAGCACTTATCAAACTTCGAAAATGGGAACATGCAGTAGAAGCAGCCACTAAATCTATTGAGGTCAATTTCAATCAAATTTTAAATTTTAAATTTTCTTATTTTTCAGATCGGAGCCACGAACGAGAAAGCTCTCGAACGACGTGCGTTCGCTTATTCAAATATGTCGGAAAAGTATGAAAATGCGATTGAAGACTACCAAAAACTTCAAGAATCCCTGCCAAAACGCCAAACAGAATTTCAACGAAAAATCGCGGAAATCAATGAAAAAATCACTGCCCGGAATGAGGCAATGAAGGCGGATATAATGGATAAATTGAAAGGATTCGGAAATTTATGTCTTTCGCCGTTTGGCTTGTCAACAGATAATTTCGAGATGGTTCCAAACGGAAAT</canonical>
            <polymorphic>TTTCTTTTTTGCCATGTTTTGTTTCTATAACCAGGTTGTACCCAACTGAATACATTTGCCTCGTTTTGAAACTCAAATTTATGTCCATTTTTAGCTTTATCTGTATAGTATGGCAGTTATCGAGGAGATTGTCGAGGGAGAGGAGGAGCAGTTGGCCAAAGTAGAACATTTGAAAAAAGAGGGAAATGAGTTTTTCGGAAAAGGAGAATTCGAGAAGGCTGATGAGAAATATCAGGTAGGATTTGAAACGACATAGCCTACATGAATTTTCTAGGTCACGTATGGTCCAGGAATGGTCTGTCATTGAAATGAAAAGTTTTAAGGCAATTCAAGATGACGGCATAGGAAATGCATGTTGAGAAAATTAAGCCACCACAATAGATAACATAGGAAACATCAGAAAAAGTTAAGACACCATGGTTAATTAACCTAGAAAACGCATCAGGTGCATGTTGGGCCATTTCTAGACCGTCAACTAAGGTGGCCTAGAAAAAACCATRTTGAGAAAGTTAGGCCACCATGGTAAATAGCCTATTTTCAGGAAGCCATCACCGCCTGTCACCAACGTCAACTGAAATTCAATCGATACTCCTCTCAAATTCTTCAGCAGCACTTATCAAACTTCGAAAATGGGAACATGCAGTAGAAGCAGCCACTAAATCTATTGAGGTCAATTTCAATCAAATTTTAAATTTTAAATTTTCTTATTTTTCAGATCGGAGCCACGAACGAGAAAGCTCTCGAACGACGTGCGTTCGCTTATTCAAATATGTCGGAAAAGTATGAAAATGCGATTGAAGACTACCAAAAACTTCAAGAATCCCTGCCAAAACGCCAAACAGAATTTCAACGAAAAATCGCGGAAATCAATGAAAAAATCACTGCCCGGAATGAGGCAATGAAGGCGGATATAATGGATAAATTGAAAGGATTCGGAAATTTATGTCTTTCGCCGTTTGGCTTGTCAACAGATAATTTCGAGATGGTTCCAAACGGAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>363 248 118 91 64 48 33 22 13</canonical_bands>
                <polymorphic_bands>363 248 118 91 70 64 33 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTGAAACGACATAGCCTAC</pcr_primer_p1>
		<pcr_primer_p2>TGATGGCTTCCTGAAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>GATTTGAAACGACATAGCCTACATGAATTTTCTAGGTCACGTATGGTCCAGGAATGGTCTGTCATTGAAATGAAAAGTTTTAAGGCAATTCAAGATGACGGCATAGGAAATGCATGTTGAGAAAATTAAGCCACCACAATAGATAACATAGGAAACATCAGAAAAAGTTAAGACACCATGGTTAATTAACCTAGAAAACGCATCAGGTGCATGTTGGGCCATTTCTAGACCGTCAACTAAGGTGGCCTAGAAAAAACCATGTTGAGAAAGTTAGGCCACCATGGTAAATAGCCTATTTTCAGGAAGCCATCA</canonical_amplicon>
		<polymorphic_amplicon>GATTTGAAACGACATAGCCTACATGAATTTTCTAGGTCACGTATGGTCCAGGAATGGTCTGTCATTGAAATGAAAAGTTTTAAGGCAATTCAAGATGACGGCATAGGAAATGCATGTTGAGAAAATTAAGCCACCACAATAGATAACATAGGAAACATCAGAAAAAGTTAAGACACCATGGTTAATTAACCTAGAAAACGCATCAGGTGCATGTTGGGCCATTTCTAGACCGTCAACTAAGGTGGCCTAGAAAAAACCATRTTGAGAAAGTTAGGCCACCATGGTAAATAGCCTATTTTCAGGAAGCCATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24019</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>251608</contig_pos>
        <strand>+</strand>
        <context>GATTATGTGG[C/G]TAGTGGCGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGCGAATATGGCGAGAATTCGGAGGAATCAGGAGATTTGTGATTATGTGG</left_flank>
        <right_flank>TAGTGGCGCTGCGTCCAGAGAAAGTGAGTTGCAAGTTTTTTACAAATTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATCCGGTAGTTGTGACAAGACCACTCAGCGATTCTGTGGAAGATGTATTCAGAGAAGTGTCTGAGCGTGAGTATTTTTTCATGGATTTTTCTAGAAGTTCCGGATTTACCGTCAACACTCTCATAGGACGATTCTCTAACTTTGAACTTTGAGCTAATTTATCTCGGTTCATGTGAAAGATATCAAAAAACTGTCAACTGATAAAATATCGGTGATATTATGATAACTATTTTTTTACGTTGACAGATTTCTGATATCTTTTGAAGGAATCGAGATAATTGAGCGAACTGTAATGAGACAATCTTTAAAATCTAAAAAATCCCAAAGTTTCAGCACCTCCACTCCACGATGTCGAAATGATTGAACTTCGCGATATGGGATACAATTTGCGCGGGTCTGAAAGAGCATTGGATCCAAGACGAGAGACAAGTGTTCGAGAAGAAATCGCTGCGAATATGGCGAGAATTCGGAGGAATCAGGAGATTTGTGATTATGTGGCTAGTGGCGCTGCGTCCAGAGAAAGTGAGTTGCAAGTTTTTTACAAATTCAAAAGTGGCATTTGAATCTTGACAGATTTTGGAAGTACTTCAATAGAAACAATACAATAGCACAACCGGGTGGGATTCAAATTGAAGTCTTAAATTAGCAAAAACTTAAGAAATTCACATCCGATCATACGTTAAACCGGCCCCTCCTATAGTTTCTTTTAGAAAACAAATCTTTCTGGGCCAACTAAATTCATAGAACTCGACGAGTACTACAAAATGAACTTATTTGGGAAACTATAACTTGTCTATGAACAAAGTTACAAGCCATGAAACTGTCAATCCTGGTCCTGGCGACTTTTTTAGATTGTTTTGACTGTAACTTTGTTCATAAATAAGCTACAGTTTTCCAAATAGTATCTTTTGTAGTACTCGTCGATTTCTATCATATCTCATTTAGTTGGTCCAAAAGTATTGATTCCAAAAATAAATATTGCCCGGTTTACAAGTAAAC</canonical>
            <polymorphic>GATCCGGTAGTTGTGACAAGACCACTCAGCGATTCTGTGGAAGATGTATTCAGAGAAGTGTCTGAGCGTGAGTATTTTTTCATGGATTTTTCTAGAAGTTCCGGATTTACCGTCAACACTCTCATAGGACGATTCTCTAACTTTGAACTTTGAGCTAATTTATCTCGGTTCATGTGAAAGATATCAAAAAACTGTCAACTGATAAAATATCGGTGATATTATGATAACTATTTTTTTACGTTGACAGATTTCTGATATCTTTTGAAGGAATCGAGATAATTGAGCGAACTGTAATGAGACAATCTTTAAAATCTAAAAAATCCCAAAGTTTCAGCACCTCCACTCCACGATGTCGAAATGATTGAACTTCGCGATATGGGATACAATTTGCGCGGGTCTGAAAGAGCATTGGATCCAAGACGAGAGACAAGTGTTCGAGAAGAAATCGCTGCGAATATGGCGAGAATTCGGAGGAATCAGGAGATTTGTGATTATGTGGSTAGTGGCGCTGCGTCCAGAGAAAGTGAGTTGCAAGTTTTTTACAAATTCAAAAGTGGCATTTGAATCTTGACAGATTTTGGAAGTACTTCAATAGAAACAATACAATAGCACAACCGGGTGGGATTCAAATTGAAGTCTTAAATTAGCAAAAACTTAAGAAATTCACATCCGATCATACGTTAAACCGGCCCCTCCTATAGTTTCTTTTAGAAAACAAATCTTTCTGGGCCAACTAAATTCATAGAACTCGACGAGTACTACAAAATGAACTTATTTGGGAAACTATAACTTGTCTATGAACAAAGTTACAAGCCATGAAACTGTCAATCCTGGTCCTGGCGACTTTTTTAGATTGTTTTGACTGTAACTTTGTTCATAAATAAGCTACAGTTTTCCAAATAGTATCTTTTGTAGTACTCGTCGATTTCTATCATATCTCATTTAGTTGGTCCAAAAGTATTGATTCCAAAAATAAATATTGCCCGGTTTACAAGTAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 408 92</canonical_bands>
                <polymorphic_bands>908 92</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>495 457 48</canonical_bands>
                <polymorphic_bands>543 457</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>345 190 154 115 84 72 40</canonical_bands>
                <polymorphic_bands>535 154 115 84 72 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACAAGTGTTCGAGAAGAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATCGGATGTGAATTTCTTAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGACAAGTGTTCGAGAAGAAATCGCTGCGAATATGGCGAGAATTCGGAGGAATCAGGAGATTTGTGATTATGTGGCTAGTGGCGCTGCGTCCAGAGAAAGTGAGTTGCAAGTTTTTTACAAATTCAAAAGTGGCATTTGAATCTTGACAGATTTTGGAAGTACTTCAATAGAAACAATACAATAGCACAACCGGGTGGGATTCAAATTGAAGTCTTAAATTAGCAAAAACTTAAGAAATTCACATCCGAT</canonical_amplicon>
		<polymorphic_amplicon>AGACAAGTGTTCGAGAAGAAATCGCTGCGAATATGGCGAGAATTCGGAGGAATCAGGAGATTTGTGATTATGTGGSTAGTGGCGCTGCGTCCAGAGAAAGTGAGTTGCAAGTTTTTTACAAATTCAAAAGTGGCATTTGAATCTTGACAGATTTTGGAAGTACTTCAATAGAAACAATACAATAGCACAACCGGGTGGGATTCAAATTGAAGTCTTAAATTAGCAAAAACTTAAGAAATTCACATCCGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24020</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>321656</contig_pos>
        <strand>+</strand>
        <context>CTCTAATCCC[A/G]TTTTTTAAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTCACTAACAATCCCCCAATTAGCTAAATTCGCAGTCTCTCTAATCCC</left_flank>
        <right_flank>TTTTTTAAACTAACTTTATTTTATGTGTTTTTCAATTTCAGTCGCCTTTC</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCCATCTGCTCCGTCGACTCCTGTTGCAGTCGCTCCGCCTCCCCAACCACAGGCCTAAATCACTTTTCTTTCGCTAAGTTTGCTCAAGTTTTCCCTCAATCTGGTGCTTCTTCTCACTCTCCCATCTTTCACATGTTTTCTCTGTTGACTCTAGTCTCTACTTCTTGGTTTTAAAAAGTGCTACATGTTTCGAATTTTCTCCTCGTATTACAGGTTCCTATTGAACTCGTTTTCCCCATTTTTTCGTATTGATTCTAAGTTTTATTAGAATTCAACTTTTCCGATTTTCTCTCCGGCTCAAAAATCTCTTTTTCGAAATTCCCAAATTTGTAAGATATTGTTTATTTCCCCCAAAACCACCGATTTGATCCTCAAAGCGCTCTTATATTTTCATGTACTTTTCTAATTTAATTTTCAAAACACTTTAAAGTCAATTGCTCAATTTTCCATTCACTAACAATCCCCCAATTAGCTAAATTCGCAGTCTCTCTAATCCCGTTTTTTAAACTAACTTTATTTTATGTGTTTTTCAATTTCAGTCGCCTTTCTCTGGTTACATAAAGATCTATAAATTTATATGAGTTCTCTTTTTTGTGAAATAGCAAAAAAAGAAACGAAAATGTAGGCATCAAATCTAGAAAAACGGATCCATTCATCGAAGTTCAGAAGAAAAAAAACAAATTTGAATTGAAGTACCTCTATACTCTCAAGTTTCAGCTCAATTATCCCAGTTCCTCTGCAAGAAATCAAAAATTAGTCGACTAATAAAAAATTGGTGATATTATGATAAATATTTTATCAGATGACATATCTTTCACAAGAACCGAGATAAATAGCCTCCAACACTTCGTTGACACTTCGGCGCTTGCCGGCTGAGCTACGCTGCCGACCTCCTAACTTTGAGTTGATATATCTCGCTCTTTTAACTAGATAACAAAAAGATTTCAACTGATAAACAATTGGTGATATCATGAAAAACATTTTATTAGTTTACAGAT</canonical>
            <polymorphic>CCTCCATCTGCTCCGTCGACTCCTGTTGCAGTCGCTCCGCCTCCCCAACCACAGGCCTAAATCACTTTTCTTTCGCTAAGTTTGCTCAAGTTTTCCCTCAATCTGGTGCTTCTTCTCACTCTCCCATCTTTCACATGTTTTCTCTGTTGACTCTAGTCTCTACTTCTTGGTTTTAAAAAGTGCTACATGTTTCGAATTTTCTCCTCGTATTACAGGTTCCTATTGAACTCGTTTTCCCCATTTTTTCGTATTGATTCTAAGTTTTATTAGAATTCAACTTTTCCGATTTTCTCTCCGGCTCAAAAATCTCTTTTTCGAAATTCCCAAATTTGTAAGATATTGTTTATTTCCCCCAAAACCACCGATTTGATCCTCAAAGCGCTCTTATATTTTCATGTACTTTTCTAATTTAATTTTCAAAACACTTTAAAGTCAATTGCTCAATTTTCCATTCACTAACAATCCCCCAATTAGCTAAATTCGCAGTCTCTCTAATCCCRTTTTTTAAACTAACTTTATTTTATGTGTTTTTCAATTTCAGTCGCCTTTCTCTGGTTACATAAAGATCTATAAATTTATATGAGTTCTCTTTTTTGTGAAATAGCAAAAAAAGAAACGAAAATGTAGGCATCAAATCTAGAAAAACGGATCCATTCATCGAAGTTCAGAAGAAAAAAAACAAATTTGAATTGAAGTACCTCTATACTCTCAAGTTTCAGCTCAATTATCCCAGTTCCTCTGCAAGAAATCAAAAATTAGTCGACTAATAAAAAATTGGTGATATTATGATAAATATTTTATCAGATGACATATCTTTCACAAGAACCGAGATAAATAGCCTCCAACACTTCGTTGACACTTCGGCGCTTGCCGGCTGAGCTACGCTGCCGACCTCCTAACTTTGAGTTGATATATCTCGCTCTTTTAACTAGATAACAAAAAGATTTCAACTGATAAACAATTGGTGATATCATGAAAAACATTTTATTAGTTTACAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGCTCTTATATTTTCATGTACT</pcr_primer_p1>
		<pcr_primer_p2>GCCTACATTTTCGTTTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCGCTCTTATATTTTCATGTACTTTTCTAATTTAATTTTCAAAACACTTTAAAGTCAATTGCTCAATTTTCCATTCACTAACAATCCCCCAATTAGCTAAATTCGCAGTCTCTCTAATCCCGTTTTTTAAACTAACTTTATTTTATGTGTTTTTCAATTTCAGTCGCCTTTCTCTGGTTACATAAAGATCTATAAATTTATATGAGTTCTCTTTTTTGTGAAATAGCAAAAAAAGAAACGAAAATGTAGGC</canonical_amplicon>
		<polymorphic_amplicon>GCGCTCTTATATTTTCATGTACTTTTCTAATTTAATTTTCAAAACACTTTAAAGTCAATTGCTCAATTTTCCATTCACTAACAATCCCCCAATTAGCTAAATTCGCAGTCTCTCTAATCCCRTTTTTTAAACTAACTTTATTTTATGTGTTTTTCAATTTCAGTCGCCTTTCTCTGGTTACATAAAGATCTATAAATTTATATGAGTTCTCTTTTTTGTGAAATAGCAAAAAAAGAAACGAAAATGTAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24021</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>321752</contig_pos>
        <strand>+</strand>
        <context>TCTCTTTTTT[A/G]TGAAATAGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTCTCTGGTTACATAAAGATCTATAAATTTATATGAGTTCTCTTTTTT</left_flank>
        <right_flank>TGAAATAGCAAAAAAAGAAACGAAAATGTAGGCATCAAATCTAGAAAAAC</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCAATCTGGTGCTTCTTCTCACTCTCCCATCTTTCACATGTTTTCTCTGTTGACTCTAGTCTCTACTTCTTGGTTTTAAAAAGTGCTACATGTTTCGAATTTTCTCCTCGTATTACAGGTTCCTATTGAACTCGTTTTCCCCATTTTTTCGTATTGATTCTAAGTTTTATTAGAATTCAACTTTTCCGATTTTCTCTCCGGCTCAAAAATCTCTTTTTCGAAATTCCCAAATTTGTAAGATATTGTTTATTTCCCCCAAAACCACCGATTTGATCCTCAAAGCGCTCTTATATTTTCATGTACTTTTCTAATTTAATTTTCAAAACACTTTAAAGTCAATTGCTCAATTTTCCATTCACTAACAATCCCCCAATTAGCTAAATTCGCAGTCTCTCTAATCCCGTTTTTTAAACTAACTTTATTTTATGTGTTTTTCAATTTCAGTCGCCTTTCTCTGGTTACATAAAGATCTATAAATTTATATGAGTTCTCTTTTTTGTGAAATAGCAAAAAAAGAAACGAAAATGTAGGCATCAAATCTAGAAAAACGGATCCATTCATCGAAGTTCAGAAGAAAAAAAACAAATTTGAATTGAAGTACCTCTATACTCTCAAGTTTCAGCTCAATTATCCCAGTTCCTCTGCAAGAAATCAAAAATTAGTCGACTAATAAAAAATTGGTGATATTATGATAAATATTTTATCAGATGACATATCTTTCACAAGAACCGAGATAAATAGCCTCCAACACTTCGTTGACACTTCGGCGCTTGCCGGCTGAGCTACGCTGCCGACCTCCTAACTTTGAGTTGATATATCTCGCTCTTTTAACTAGATAACAAAAAGATTTCAACTGATAAACAATTGGTGATATCATGAAAAACATTTTATTAGTTTACAGATTTTGTATATCTTTTACAGGAACTGGGATAAATGGTTTCAGTTGACAAGTCGGCGCTTGCCTGCCAACCTCTGATCTTTGAGAAAATAAGGTATGGA</canonical>
            <polymorphic>CTCAATCTGGTGCTTCTTCTCACTCTCCCATCTTTCACATGTTTTCTCTGTTGACTCTAGTCTCTACTTCTTGGTTTTAAAAAGTGCTACATGTTTCGAATTTTCTCCTCGTATTACAGGTTCCTATTGAACTCGTTTTCCCCATTTTTTCGTATTGATTCTAAGTTTTATTAGAATTCAACTTTTCCGATTTTCTCTCCGGCTCAAAAATCTCTTTTTCGAAATTCCCAAATTTGTAAGATATTGTTTATTTCCCCCAAAACCACCGATTTGATCCTCAAAGCGCTCTTATATTTTCATGTACTTTTCTAATTTAATTTTCAAAACACTTTAAAGTCAATTGCTCAATTTTCCATTCACTAACAATCCCCCAATTAGCTAAATTCGCAGTCTCTCTAATCCCGTTTTTTAAACTAACTTTATTTTATGTGTTTTTCAATTTCAGTCGCCTTTCTCTGGTTACATAAAGATCTATAAATTTATATGAGTTCTCTTTTTTRTGAAATAGCAAAAAAAGAAACGAAAATGTAGGCATCAAATCTAGAAAAACGGATCCATTCATCGAAGTTCAGAAGAAAAAAAACAAATTTGAATTGAAGTACCTCTATACTCTCAAGTTTCAGCTCAATTATCCCAGTTCCTCTGCAAGAAATCAAAAATTAGTCGACTAATAAAAAATTGGTGATATTATGATAAATATTTTATCAGATGACATATCTTTCACAAGAACCGAGATAAATAGCCTCCAACACTTCGTTGACACTTCGGCGCTTGCCGGCTGAGCTACGCTGCCGACCTCCTAACTTTGAGTTGATATATCTCGCTCTTTTAACTAGATAACAAAAAGATTTCAACTGATAAACAATTGGTGATATCATGAAAAACATTTTATTAGTTTACAGATTTTGTATATCTTTTACAGGAACTGGGATAAATGGTTTCAGTTGACAAGTCGGCGCTTGCCTGCCAACCTCTGATCTTTGAGAAAATAAGGTATGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>182 179 129 109 72 71 63 49 39 31 28 15 12 11 10</canonical_bands>
                <polymorphic_bands>253 179 129 109 72 63 49 39 31 28 15 12 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAATTTTCCATTCACTAACAAT</pcr_primer_p1>
		<pcr_primer_p2>AATGGATCCGTTTTTCTAGATT</pcr_primer_p2>
		<pcr_amplicon_size>215</pcr_amplicon_size>
		<canonical_amplicon>TCAATTTTCCATTCACTAACAATCCCCCAATTAGCTAAATTCGCAGTCTCTCTAATCCCGTTTTTTAAACTAACTTTATTTTATGTGTTTTTCAATTTCAGTCGCCTTTCTCTGGTTACATAAAGATCTATAAATTTATATGAGTTCTCTTTTTTGTGAAATAGCAAAAAAAGAAACGAAAATGTAGGCATCAAATCTAGAAAAACGGATCCATT</canonical_amplicon>
		<polymorphic_amplicon>TCAATTTTCCATTCACTAACAATCCCCCAATTAGCTAAATTCGCAGTCTCTCTAATCCCGTTTTTTAAACTAACTTTATTTTATGTGTTTTTCAATTTCAGTCGCCTTTCTCTGGTTACATAAAGATCTATAAATTTATATGAGTTCTCTTTTTTRTGAAATAGCAAAAAAAGAAACGAAAATGTAGGCATCAAATCTAGAAAAACGGATCCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24022</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>321886</contig_pos>
        <strand></strand>
        <context>ctcaattatc[C/T]cagttcctct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAATTTGAATTGAAGTACCTCTATACTCTCAAGTTTCAGCTCAATTATC</left_flank>
        <right_flank>CAGTTCCTCTGCAAGAAATCAAAAATTAGTCGACTAATAAAAAATTGGTG</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTCCCCATTTTTTCGTATTGATTCTAAGTTTTATTAGAATTCAACTTTTCCGATTTTCTCTCCGGCTCAAAAATCTCTTTTTCGAAATTCCCAAATTTGTAAGATATTGTTTATTTCCCCCAAAACCACCGATTTGATCCTCAAAGCGCTCTTATATTTTCATGTACTTTTCTAATTTAATTTTCAAAACACTTTAAAGTCAATTGCTCAATTTTCCATTCACTAACAATCCCCCAATTAGCTAAATTCGCAGTCTCTCTAATCCCGTTTTTTAAACTAACTTTATTTTATGTGTTTTTCAATTTCAGTCGCCTTTCTCTGGTTACATAAAGATCTATAAATTTATATGAGTTCTCTTTTTTGTGAAATAGCAAAAAAAGAAACGAAAATGTAGGCATCAAATCTAGAAAAACGGATCCATTCATCGAAGTTCAGAAGAAAAAAAACAAATTTGAATTGAAGTACCTCTATACTCTCAAGTTTCAGCTCAATTATCCCAGTTCCTCTGCAAGAAATCAAAAATTAGTCGACTAATAAAAAATTGGTGATATTATGATAAATATTTTATCAGATGACATATCTTTCACAAGAACCGAGATAAATAGCCTCCAACACTTCGTTGACACTTCGGCGCTTGCCGGCTGAGCTACGCTGCCGACCTCCTAACTTTGAGTTGATATATCTCGCTCTTTTAACTAGATAACAAAAAGATTTCAACTGATAAACAATTGGTGATATCATGAAAAACATTTTATTAGTTTACAGATTTTGTATATCTTTTACAGGAACTGGGATAAATGGTTTCAGTTGACAAGTCGGCGCTTGCCTGCCAACCTCTGATCTTTGAGAAAATAAGGTATGGAATCTGAAACGAATAACTATGCATGTTTGTGAATGAAGATGCAAAAACCATGAACAAAAGATTACTTCTTACTCTTGATGAATTTATAAACAAAAAGTTGAAAGACACTTTTCCTATTGAGCCCGTCAAATTGTA</canonical>
            <polymorphic>GTTTTCCCCATTTTTTCGTATTGATTCTAAGTTTTATTAGAATTCAACTTTTCCGATTTTCTCTCCGGCTCAAAAATCTCTTTTTCGAAATTCCCAAATTTGTAAGATATTGTTTATTTCCCCCAAAACCACCGATTTGATCCTCAAAGCGCTCTTATATTTTCATGTACTTTTCTAATTTAATTTTCAAAACACTTTAAAGTCAATTGCTCAATTTTCCATTCACTAACAATCCCCCAATTAGCTAAATTCGCAGTCTCTCTAATCCCGTTTTTTAAACTAACTTTATTTTATGTGTTTTTCAATTTCAGTCGCCTTTCTCTGGTTACATAAAGATCTATAAATTTATATGAGTTCTCTTTTTTGTGAAATAGCAAAAAAAGAAACGAAAATGTAGGCATCAAATCTAGAAAAACGGATCCATTCATCGAAGTTCAGAAGAAAAAAAACAAATTTGAATTGAAGTACCTCTATACTCTCAAGTTTCAGCTCAATTATCYCAGTTCCTCTGCAAGAAATCAAAAATTAGTCGACTAATAAAAAATTGGTGATATTATGATAAATATTTTATCAGATGACATATCTTTCACAAGAACCGAGATAAATAGCCTCCAACACTTCGTTGACACTTCGGCGCTTGCCGGCTGAGCTACGCTGCCGACCTCCTAACTTTGAGTTGATATATCTCGCTCTTTTAACTAGATAACAAAAAGATTTCAACTGATAAACAATTGGTGATATCATGAAAAACATTTTATTAGTTTACAGATTTTGTATATCTTTTACAGGAACTGGGATAAATGGTTTCAGTTGACAAGTCGGCGCTTGCCTGCCAACCTCTGATCTTTGAGAAAATAAGGTATGGAATCTGAAACGAATAACTATGCATGTTTGTGAATGAAGATGCAAAAACCATGAACAAAAGATTACTTCTTACTCTTGATGAATTTATAAACAAAAAGTTGAAAGACACTTTTCCTATTGAGCCCGTCAAATTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATCGAAGTTCAGAAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTATTTTCTCAAAGATCAGAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>434</pcr_amplicon_size>
		<canonical_amplicon>TCATCGAAGTTCAGAAGAAAAAAAACAAATTTGAATTGAAGTACCTCTATACTCTCAAGTTTCAGCTCAATTATCCCAGTTCCTCTGCAAGAAATCAAAAATTAGTCGACTAATAAAAAATTGGTGATATTATGATAAATATTTTATCAGATGACATATCTTTCACAAGAACCGAGATAAATAGCCTCCAACACTTCGTTGACACTTCGGCGCTTGCCGGCTGAGCTACGCTGCCGACCTCCTAACTTTGAGTTGATATATCTCGCTCTTTTAACTAGATAACAAAAAGATTTCAACTGATAAACAATTGGTGATATCATGAAAAACATTTTATTAGTTTACAGATTTTGTATATCTTTTACAGGAACTGGGATAAATGGTTTCAGTTGACAAGTCGGCGCTTGCCTGCCAACCTCTGATCTTTGAGAAAATAA</canonical_amplicon>
		<polymorphic_amplicon>TCATCGAAGTTCAGAAGAAAAAAAACAAATTTGAATTGAAGTACCTCTATACTCTCAAGTTTCAGCTCAATTATCYCAGTTCCTCTGCAAGAAATCAAAAATTAGTCGACTAATAAAAAATTGGTGATATTATGATAAATATTTTATCAGATGACATATCTTTCACAAGAACCGAGATAAATAGCCTCCAACACTTCGTTGACACTTCGGCGCTTGCCGGCTGAGCTACGCTGCCGACCTCCTAACTTTGAGTTGATATATCTCGCTCTTTTAACTAGATAACAAAAAGATTTCAACTGATAAACAATTGGTGATATCATGAAAAACATTTTATTAGTTTACAGATTTTGTATATCTTTTACAGGAACTGGGATAAATGGTTTCAGTTGACAAGTCGGCGCTTGCCTGCCAACCTCTGATCTTTGAGAAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24023</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>321934</contig_pos>
        <strand></strand>
        <context>taaaaaattg[G/A]tgatattatg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCCCAGTTCCTCTGCAAGAAATCAAAAATTAGTCGACTAATAAAAAATTG</left_flank>
        <right_flank>TGATATTATGATAAATATTTTATCAGATGACATATCTTTCACAAGAACCG</right_flank>
        <qual_score>47</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCCGATTTTCTCTCCGGCTCAAAAATCTCTTTTTCGAAATTCCCAAATTTGTAAGATATTGTTTATTTCCCCCAAAACCACCGATTTGATCCTCAAAGCGCTCTTATATTTTCATGTACTTTTCTAATTTAATTTTCAAAACACTTTAAAGTCAATTGCTCAATTTTCCATTCACTAACAATCCCCCAATTAGCTAAATTCGCAGTCTCTCTAATCCCGTTTTTTAAACTAACTTTATTTTATGTGTTTTTCAATTTCAGTCGCCTTTCTCTGGTTACATAAAGATCTATAAATTTATATGAGTTCTCTTTTTTGTGAAATAGCAAAAAAAGAAACGAAAATGTAGGCATCAAATCTAGAAAAACGGATCCATTCATCGAAGTTCAGAAGAAAAAAAACAAATTTGAATTGAAGTACCTCTATACTCTCAAGTTTCAGCTCAATTATCCCAGTTCCTCTGCAAGAAATCAAAAATTAGTCGACTAATAAAAAATTGGTGATATTATGATAAATATTTTATCAGATGACATATCTTTCACAAGAACCGAGATAAATAGCCTCCAACACTTCGTTGACACTTCGGCGCTTGCCGGCTGAGCTACGCTGCCGACCTCCTAACTTTGAGTTGATATATCTCGCTCTTTTAACTAGATAACAAAAAGATTTCAACTGATAAACAATTGGTGATATCATGAAAAACATTTTATTAGTTTACAGATTTTGTATATCTTTTACAGGAACTGGGATAAATGGTTTCAGTTGACAAGTCGGCGCTTGCCTGCCAACCTCTGATCTTTGAGAAAATAAGGTATGGAATCTGAAACGAATAACTATGCATGTTTGTGAATGAAGATGCAAAAACCATGAACAAAAGATTACTTCTTACTCTTGATGAATTTATAAACAAAAAGTTGAAAGACACTTTTCCTATTGAGCCCGTCAAATTGTAACCTAAACTTGAACAACGAGACCTGTTCAGTCTGAACGGACGAATGGC</canonical>
            <polymorphic>TTTTCCGATTTTCTCTCCGGCTCAAAAATCTCTTTTTCGAAATTCCCAAATTTGTAAGATATTGTTTATTTCCCCCAAAACCACCGATTTGATCCTCAAAGCGCTCTTATATTTTCATGTACTTTTCTAATTTAATTTTCAAAACACTTTAAAGTCAATTGCTCAATTTTCCATTCACTAACAATCCCCCAATTAGCTAAATTCGCAGTCTCTCTAATCCCGTTTTTTAAACTAACTTTATTTTATGTGTTTTTCAATTTCAGTCGCCTTTCTCTGGTTACATAAAGATCTATAAATTTATATGAGTTCTCTTTTTTGTGAAATAGCAAAAAAAGAAACGAAAATGTAGGCATCAAATCTAGAAAAACGGATCCATTCATCGAAGTTCAGAAGAAAAAAAACAAATTTGAATTGAAGTACCTCTATACTCTCAAGTTTCAGCTCAATTATCCCAGTTCCTCTGCAAGAAATCAAAAATTAGTCGACTAATAAAAAATTGRTGATATTATGATAAATATTTTATCAGATGACATATCTTTCACAAGAACCGAGATAAATAGCCTCCAACACTTCGTTGACACTTCGGCGCTTGCCGGCTGAGCTACGCTGCCGACCTCCTAACTTTGAGTTGATATATCTCGCTCTTTTAACTAGATAACAAAAAGATTTCAACTGATAAACAATTGGTGATATCATGAAAAACATTTTATTAGTTTACAGATTTTGTATATCTTTTACAGGAACTGGGATAAATGGTTTCAGTTGACAAGTCGGCGCTTGCCTGCCAACCTCTGATCTTTGAGAAAATAAGGTATGGAATCTGAAACGAATAACTATGCATGTTTGTGAATGAAGATGCAAAAACCATGAACAAAAGATTACTTCTTACTCTTGATGAATTTATAAACAAAAAGTTGAAAGACACTTTTCCTATTGAGCCCGTCAAATTGTAACCTAAACTTGAACAACGAGACCTGTTCAGTCTGAACGGACGAATGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>182 159 109 83 76 76 72 71 63 39 31 28 11</canonical_bands>
                <polymorphic_bands>221 159 109 83 76 76 72 71 63 31 28 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATCGAAGTTCAGAAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTATTTTCTCAAAGATCAGAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>434</pcr_amplicon_size>
		<canonical_amplicon>TCATCGAAGTTCAGAAGAAAAAAAACAAATTTGAATTGAAGTACCTCTATACTCTCAAGTTTCAGCTCAATTATCCCAGTTCCTCTGCAAGAAATCAAAAATTAGTCGACTAATAAAAAATTGGTGATATTATGATAAATATTTTATCAGATGACATATCTTTCACAAGAACCGAGATAAATAGCCTCCAACACTTCGTTGACACTTCGGCGCTTGCCGGCTGAGCTACGCTGCCGACCTCCTAACTTTGAGTTGATATATCTCGCTCTTTTAACTAGATAACAAAAAGATTTCAACTGATAAACAATTGGTGATATCATGAAAAACATTTTATTAGTTTACAGATTTTGTATATCTTTTACAGGAACTGGGATAAATGGTTTCAGTTGACAAGTCGGCGCTTGCCTGCCAACCTCTGATCTTTGAGAAAATAA</canonical_amplicon>
		<polymorphic_amplicon>TCATCGAAGTTCAGAAGAAAAAAAACAAATTTGAATTGAAGTACCTCTATACTCTCAAGTTTCAGCTCAATTATCCCAGTTCCTCTGCAAGAAATCAAAAATTAGTCGACTAATAAAAAATTGRTGATATTATGATAAATATTTTATCAGATGACATATCTTTCACAAGAACCGAGATAAATAGCCTCCAACACTTCGTTGACACTTCGGCGCTTGCCGGCTGAGCTACGCTGCCGACCTCCTAACTTTGAGTTGATATATCTCGCTCTTTTAACTAGATAACAAAAAGATTTCAACTGATAAACAATTGGTGATATCATGAAAAACATTTTATTAGTTTACAGATTTTGTATATCTTTTACAGGAACTGGGATAAATGGTTTCAGTTGACAAGTCGGCGCTTGCCTGCCAACCTCTGATCTTTGAGAAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24024</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>336035</contig_pos>
        <strand></strand>
        <context>AGATTAGCTG[C/A]AWAAATTGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TCCTCAGCAGCGGCTTCTAGAAGAGCTTCTTCTGGGACGAAGATTAGCTG</left_flank>
        <right_flank>AAAAATTGATTTTTTTTAAGTTTTCAATTGTTTTCATTATGATTTTTGTT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACTAATTTATTGATGAATTCCTCTCCATACCCATGTTTTTTATTCTTTTTAAATTTGTCTCGTTTTTCCATTATCAACGGTAGAAAACAGTTTATTTTGCGTTGTTGCTTGTGTTCACTCTCTTCTTCTACAAAATAAACTTTTCGAGACTCAATAAAAGGCGATCGAGATTGTGCTGATTTTTGTATTTGACTTGGTGTGGGGTGTTGATGGGGAGAACTTGAAATATATCAGAGCAAAGGGGGAAAAGCCGGGAAAGGAGAAAAAACGGAGAGAGGGAAACCGTTGAAAATGTGTGGAGACAAATTGTTTGGTGTTTACCGGGAAAAGAAGGAAATAGAAGAAGCAGAAAAGAAAATTTAGATAAATCTCAATCGTCGGGAGGCTCTCTCGTTGAGAATCGTTGCAATTTCAGCTATCCTTTGACGGAGTTCCAGCTCGTCTTGTTCCTCAGCAGCGGCTTCTAGAAGAGCTTCTTCTGGGACGAAGATTAGCTGCAAAAATTGATTTTTTTTAAGTTTTCAATTGTTTTCATTATGATTTTTGTTGTTTATGTCTGTACGAAAATTTTGAAAAATTGGCTTCGCGCAATCGCGCTCCGCTGGCTTGACTTGCAGTTCGAAATTTAAACATGGAGATACCGTACCTCTTGGTTATCATCATATTGTTCCGGTAGGTCATTTTCATCGAACGCCTCGAAGACTGGAACCGAGCGACGATCGCGTGGCATATATTCGATTGGTTGGGTTACTGTAACCTTTACTTTGCCTTTGTGCTCTCTCCGTTCTCTAACTCACAGTATTCTGGAAGCTCGACGATCTCATATGCTTCAATGGCTTCCGGGTTGTACTGGTCGATTTCGTTTTGAACGATTTCCGCAAGAACGGCGAGTTGGTCATCGCTGAGACCTGAAAAAAAGATGAATCATTGAATAGGAAACCATTCATTATTTTGAATGTCATGGAATTAGTGAATAGAATTTTTGTTAGGGATGATGA</canonical>
            <polymorphic>TTACTAATTTATTGATGAATTCCTCTCCATACCCATGTTTTTTATTCTTTTTAAATTTGTCTCGTTTTTCCATTATCAACGGTAGAAAACAGTTTATTTTGCGTTGTTGCTTGTGTTCACTCTCTTCTTCTACAAAATAAACTTTTCGAGACTCAATAAAAGGCGATCGAGATTGTGCTGATTTTTGTATTTGACTTGGTGTGGGGTGTTGATGGGGAGAACTTGAAATATATCAGAGCAAAGGGGGAAAAGCCGGGAAAGGAGAAAAAACGGAGAGAGGGAAACCGTTGAAAATGTGTGGAGACAAATTGTTTGGTGTTTACCGGGAAAAGAAGGAAATAGAAGAAGCAGAAAAGAAAATTTAGATAAATCTCAATCGTCGGGAGGCTCTCTCGTTGAGAATCGTTGCAATTTCAGCTATCCTTTGACGGAGTTCCAGCTCGTCTTGTTCCTCAGCAGCGGCTTCTAGAAGAGCTTCTTCTGGGACGAAGATTAGCTGMAAAAATTGATTTTTTTTAAGTTTTCAATTGTTTTCATTATGATTTTTGTTGTTTATGTCTGTACGAAAATTTTGAAAAATTGGCTTCGCGCAATCGCGCTCCGCTGGCTTGACTTGCAGTTCGAAATTTAAACATGGAGATACCGTACCTCTTGGTTATCATCATATTGTTCCGGTAGGTCATTTTCATCGAACGCCTCGAAGACTGGAACCGAGCGACGATCGCGTGGCATATATTCGATTGGTTGGGTTACTGTAACCTTTACTTTGCCTTTGTGCTCTCTCCGTTCTCTAACTCACAGTATTCTGGAAGCTCGACGATCTCATATGCTTCAATGGCTTCCGGGTTGTACTGGTCGATTTCGTTTTGAACGATTTCCGCAAGAACGGCGAGTTGGTCATCGCTGAGACCTGAAAAAAAGATGAATCATTGAATAGGAAACCATTCATTATTTTGAATGTCATGGAATTAGTGAATAGAATTTTTGTTAGGGATGATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>501 459 40</canonical_bands>
                <polymorphic_bands>541 459</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>408 384 117 91</canonical_bands>
                <polymorphic_bands>408 384 208</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>504 456 40</canonical_bands>
                <polymorphic_bands>544 456</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCTATCCTTTGACGGAGTT</pcr_primer_p1>
		<pcr_primer_p2>CAATATGATGATAACCAAGAGGT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AGCTATCCTTTGACGGAGTTCCAGCTCGTCTTGTTCCTCAGCAGCGGCTTCTAGAAGAGCTTCTTCTGGGACGAAGATTAGCTGCAAAAATTGATTTTTTTTAAGTTTTCAATTGTTTTCATTATGATTTTTGTTGTTTATGTCTGTACGAAAATTTTGAAAAATTGGCTTCGCGCAATCGCGCTCCGCTGGCTTGACTTGCAGTTCGAAATTTAAACATGGAGATACCGTACCTCTTGGTTATCATCATATTG</canonical_amplicon>
		<polymorphic_amplicon>AGCTATCCTTTGACGGAGTTCCAGCTCGTCTTGTTCCTCAGCAGCGGCTTCTAGAAGAGCTTCTTCTGGGACGAAGATTAGCTGMAAAAATTGATTTTTTTTAAGTTTTCAATTGTTTTCATTATGATTTTTGTTGTTTATGTCTGTACGAAAATTTTGAAAAATTGGCTTCGCGCAATCGCGCTCCGCTGGCTTGACTTGCAGTTCGAAATTTAAACATGGAGATACCGTACCTCTTGGTTATCATCATATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24025</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>336037</contig_pos>
        <strand></strand>
        <context>ATTAGCTGMA[A/T]AAATTGATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCAGCAGCGGCTTCTAGAAGAGCTTCTTCTGGGACGAAGATTAGCTGCA</left_flank>
        <right_flank>AAATTGATTTTTTTTAAGTTTTCAATTGTTTTCATTATGATTTTTGTTGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTAATTTATTGATGAATTCCTCTCCATACCCATGTTTTTTATTCTTTTTAAATTTGTCTCGTTTTTCCATTATCAACGGTAGAAAACAGTTTATTTTGCGTTGTTGCTTGTGTTCACTCTCTTCTTCTACAAAATAAACTTTTCGAGACTCAATAAAAGGCGATCGAGATTGTGCTGATTTTTGTATTTGACTTGGTGTGGGGTGTTGATGGGGAGAACTTGAAATATATCAGAGCAAAGGGGGAAAAGCCGGGAAAGGAGAAAAAACGGAGAGAGGGAAACCGTTGAAAATGTGTGGAGACAAATTGTTTGGTGTTTACCGGGAAAAGAAGGAAATAGAAGAAGCAGAAAAGAAAATTTAGATAAATCTCAATCGTCGGGAGGCTCTCTCGTTGAGAATCGTTGCAATTTCAGCTATCCTTTGACGGAGTTCCAGCTCGTCTTGTTCCTCAGCAGCGGCTTCTAGAAGAGCTTCTTCTGGGACGAAGATTAGCTGCAAAAATTGATTTTTTTTAAGTTTTCAATTGTTTTCATTATGATTTTTGTTGTTTATGTCTGTACGAAAATTTTGAAAAATTGGCTTCGCGCAATCGCGCTCCGCTGGCTTGACTTGCAGTTCGAAATTTAAACATGGAGATACCGTACCTCTTGGTTATCATCATATTGTTCCGGTAGGTCATTTTCATCGAACGCCTCGAAGACTGGAACCGAGCGACGATCGCGTGGCATATATTCGATTGGTTGGGTTACTGTAACCTTTACTTTGCCTTTGTGCTCTCTCCGTTCTCTAACTCACAGTATTCTGGAAGCTCGACGATCTCATATGCTTCAATGGCTTCCGGGTTGTACTGGTCGATTTCGTTTTGAACGATTTCCGCAAGAACGGCGAGTTGGTCATCGCTGAGACCTGAAAAAAAGATGAATCATTGAATAGGAAACCATTCATTATTTTGAATGTCATGGAATTAGTGAATAGAATTTTTGTTAGGGATGATGAAG</canonical>
            <polymorphic>ACTAATTTATTGATGAATTCCTCTCCATACCCATGTTTTTTATTCTTTTTAAATTTGTCTCGTTTTTCCATTATCAACGGTAGAAAACAGTTTATTTTGCGTTGTTGCTTGTGTTCACTCTCTTCTTCTACAAAATAAACTTTTCGAGACTCAATAAAAGGCGATCGAGATTGTGCTGATTTTTGTATTTGACTTGGTGTGGGGTGTTGATGGGGAGAACTTGAAATATATCAGAGCAAAGGGGGAAAAGCCGGGAAAGGAGAAAAAACGGAGAGAGGGAAACCGTTGAAAATGTGTGGAGACAAATTGTTTGGTGTTTACCGGGAAAAGAAGGAAATAGAAGAAGCAGAAAAGAAAATTTAGATAAATCTCAATCGTCGGGAGGCTCTCTCGTTGAGAATCGTTGCAATTTCAGCTATCCTTTGACGGAGTTCCAGCTCGTCTTGTTCCTCAGCAGCGGCTTCTAGAAGAGCTTCTTCTGGGACGAAGATTAGCTGCAWAAATTGATTTTTTTTAAGTTTTCAATTGTTTTCATTATGATTTTTGTTGTTTATGTCTGTACGAAAATTTTGAAAAATTGGCTTCGCGCAATCGCGCTCCGCTGGCTTGACTTGCAGTTCGAAATTTAAACATGGAGATACCGTACCTCTTGGTTATCATCATATTGTTCCGGTAGGTCATTTTCATCGAACGCCTCGAAGACTGGAACCGAGCGACGATCGCGTGGCATATATTCGATTGGTTGGGTTACTGTAACCTTTACTTTGCCTTTGTGCTCTCTCCGTTCTCTAACTCACAGTATTCTGGAAGCTCGACGATCTCATATGCTTCAATGGCTTCCGGGTTGTACTGGTCGATTTCGTTTTGAACGATTTCCGCAAGAACGGCGAGTTGGTCATCGCTGAGACCTGAAAAAAAGATGAATCATTGAATAGGAAACCATTCATTATTTTGAATGTCATGGAATTAGTGAATAGAATTTTTGTTAGGGATGATGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTATCCTTTGACGGAGTT</pcr_primer_p1>
		<pcr_primer_p2>CAATATGATGATAACCAAGAGGT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AGCTATCCTTTGACGGAGTTCCAGCTCGTCTTGTTCCTCAGCAGCGGCTTCTAGAAGAGCTTCTTCTGGGACGAAGATTAGCTGCAAAAATTGATTTTTTTTAAGTTTTCAATTGTTTTCATTATGATTTTTGTTGTTTATGTCTGTACGAAAATTTTGAAAAATTGGCTTCGCGCAATCGCGCTCCGCTGGCTTGACTTGCAGTTCGAAATTTAAACATGGAGATACCGTACCTCTTGGTTATCATCATATTG</canonical_amplicon>
		<polymorphic_amplicon>AGCTATCCTTTGACGGAGTTCCAGCTCGTCTTGTTCCTCAGCAGCGGCTTCTAGAAGAGCTTCTTCTGGGACGAAGATTAGCTGCAWAAATTGATTTTTTTTAAGTTTTCAATTGTTTTCATTATGATTTTTGTTGTTTATGTCTGTACGAAAATTTTGAAAAATTGGCTTCGCGCAATCGCGCTCCGCTGGCTTGACTTGCAGTTCGAAATTTAAACATGGAGATACCGTACCTCTTGGTTATCATCATATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24026</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>336120</contig_pos>
        <strand></strand>
        <context>aaaaattggc[T/G]tcgcgcaatc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CATTATGATTTTTGTTGTTTATGTCTGTACGAAAATTTTGAAAAATTGGC</left_flank>
        <right_flank>TCGCGCAATCGCGCTCCGCTGGCTTGACTTGCAGTTCGAAATTTAAACAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACAGTTTATTTTGCGTTGTTGCTTGTGTTCACTCTCTTCTTCTACAAAATAAACTTTTCGAGACTCAATAAAAGGCGATCGAGATTGTGCTGATTTTTGTATTTGACTTGGTGTGGGGTGTTGATGGGGAGAACTTGAAATATATCAGAGCAAAGGGGGAAAAGCCGGGAAAGGAGAAAAAACGGAGAGAGGGAAACCGTTGAAAATGTGTGGAGACAAATTGTTTGGTGTTTACCGGGAAAAGAAGGAAATAGAAGAAGCAGAAAAGAAAATTTAGATAAATCTCAATCGTCGGGAGGCTCTCTCGTTGAGAATCGTTGCAATTTCAGCTATCCTTTGACGGAGTTCCAGCTCGTCTTGTTCCTCAGCAGCGGCTTCTAGAAGAGCTTCTTCTGGGACGAAGATTAGCTGCAAAAATTGATTTTTTTTAAGTTTTCAATTGTTTTCATTATGATTTTTGTTGTTTATGTCTGTACGAAAATTTTGAAAAATTGGCTTCGCGCAATCGCGCTCCGCTGGCTTGACTTGCAGTTCGAAATTTAAACATGGAGATACCGTACCTCTTGGTTATCATCATATTGTTCCGGTAGGTCATTTTCATCGAACGCCTCGAAGACTGGAACCGAGCGACGATCGCGTGGCATATATTCGATTGGTTGGGTTACTGTAACCTTTACTTTGCCTTTGTGCTCTCTCCGTTCTCTAACTCACAGTATTCTGGAAGCTCGACGATCTCATATGCTTCAATGGCTTCCGGGTTGTACTGGTCGATTTCGTTTTGAACGATTTCCGCAAGAACGGCGAGTTGGTCATCGCTGAGACCTGAAAAAAAGATGAATCATTGAATAGGAAACCATTCATTATTTTGAATGTCATGGAATTAGTGAATAGAATTTTTGTTAGGGATGATGAAGAAAAATAAGGAGAAGGATTAGATTCTATACGAAGGATCATGATGACAATAAGGCGTTTTAATAAGGAAAAGAAATGAGTAATT</canonical>
            <polymorphic>AAAACAGTTTATTTTGCGTTGTTGCTTGTGTTCACTCTCTTCTTCTACAAAATAAACTTTTCGAGACTCAATAAAAGGCGATCGAGATTGTGCTGATTTTTGTATTTGACTTGGTGTGGGGTGTTGATGGGGAGAACTTGAAATATATCAGAGCAAAGGGGGAAAAGCCGGGAAAGGAGAAAAAACGGAGAGAGGGAAACCGTTGAAAATGTGTGGAGACAAATTGTTTGGTGTTTACCGGGAAAAGAAGGAAATAGAAGAAGCAGAAAAGAAAATTTAGATAAATCTCAATCGTCGGGAGGCTCTCTCGTTGAGAATCGTTGCAATTTCAGCTATCCTTTGACGGAGTTCCAGCTCGTCTTGTTCCTCAGCAGCGGCTTCTAGAAGAGCTTCTTCTGGGACGAAGATTAGCTGCAAAAATTGATTTTTTTTAAGTTTTCAATTGTTTTCATTATGATTTTTGTTGTTTATGTCTGTACGAAAATTTTGAAAAATTGGCKTCGCGCAATCGCGCTCCGCTGGCTTGACTTGCAGTTCGAAATTTAAACATGGAGATACCGTACCTCTTGGTTATCATCATATTGTTCCGGTAGGTCATTTTCATCGAACGCCTCGAAGACTGGAACCGAGCGACGATCGCGTGGCATATATTCGATTGGTTGGGTTACTGTAACCTTTACTTTGCCTTTGTGCTCTCTCCGTTCTCTAACTCACAGTATTCTGGAAGCTCGACGATCTCATATGCTTCAATGGCTTCCGGGTTGTACTGGTCGATTTCGTTTTGAACGATTTCCGCAAGAACGGCGAGTTGGTCATCGCTGAGACCTGAAAAAAAGATGAATCATTGAATAGGAAACCATTCATTATTTTGAATGTCATGGAATTAGTGAATAGAATTTTTGTTAGGGATGATGAAGAAAAATAAGGAGAAGGATTAGATTCTATACGAAGGATCATGATGACAATAAGGCGTTTTAATAAGGAAAAGAAATGAGTAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>247 205 167 135 87 30 26 24 23 22 22 12</canonical_bands>
                <polymorphic_bands>247 205 167 135 111 30 26 23 22 22 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATTGTTTTCATTATGATTTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAAGGCAAAGTAAAGGTTACAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAATTGTTTTCATTATGATTTTTGTTGTTTATGTCTGTACGAAAATTTTGAAAAATTGGCTTCGCGCAATCGCGCTCCGCTGGCTTGACTTGCAGTTCGAAATTTAAACATGGAGATACCGTACCTCTTGGTTATCATCATATTGTTCCGGTAGGTCATTTTCATCGAACGCCTCGAAGACTGGAACCGAGCGACGATCGCGTGGCATATATTCGATTGGTTGGGTTACTGTAACCTTTACTTTGCCTTT</canonical_amplicon>
		<polymorphic_amplicon>CAATTGTTTTCATTATGATTTTTGTTGTTTATGTCTGTACGAAAATTTTGAAAAATTGGCKTCGCGCAATCGCGCTCCGCTGGCTTGACTTGCAGTTCGAAATTTAAACATGGAGATACCGTACCTCTTGGTTATCATCATATTGTTCCGGTAGGTCATTTTCATCGAACGCCTCGAAGACTGGAACCGAGCGACGATCGCGTGGCATATATTCGATTGGTTGGGTTACTGTAACCTTTACTTTGCCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24027</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>336385</contig_pos>
        <strand></strand>
        <context>TTCCGGGTTG[T/A]ACTGGTCGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGTATTCTGGAAGCTCGACGATCTCATATGCTTCAATGGCTTCCGGGTTG</left_flank>
        <right_flank>ACTGGTCGATTTCGTTTTGAACGATTTCCGCAAGAACGGCGAGTTGGTCA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAGAAAATTTAGATAAATCTCAATCGTCGGGAGGCTCTCTCGTTGAGAATCGTTGCAATTTCAGCTATCCTTTGACGGAGTTCCAGCTCGTCTTGTTCCTCAGCAGCGGCTTCTAGAAGAGCTTCTTCTGGGACGAAGATTAGCTGCAAAAATTGATTTTTTTTAAGTTTTCAATTGTTTTCATTATGATTTTTGTTGTTTATGTCTGTACGAAAATTTTGAAAAATTGGCTTCGCGCAATCGCGCTCCGCTGGCTTGACTTGCAGTTCGAAATTTAAACATGGAGATACCGTACCTCTTGGTTATCATCATATTGTTCCGGTAGGTCATTTTCATCGAACGCCTCGAAGACTGGAACCGAGCGACGATCGCGTGGCATATATTCGATTGGTTGGGTTACTGTAACCTTTACTTTGCCTTTGTGCTCTCTCCGTTCTCTAACTCACAGTATTCTGGAAGCTCGACGATCTCATATGCTTCAATGGCTTCCGGGTTGTACTGGTCGATTTCGTTTTGAACGATTTCCGCAAGAACGGCGAGTTGGTCATCGCTGAGACCTGAAAAAAAGATGAATCATTGAATAGGAAACCATTCATTATTTTGAATGTCATGGAATTAGTGAATAGAATTTTTGTTAGGGATGATGAAGAAAAATAAGGAGAAGGATTAGATTCTATACGAAGGATCATGATGACAATAAGGCGTTTTAATAAGGAAAAGAAATGAGTAATTCTCAATTTTTAGGAGTTTAGGTGTCAACAACGACATGAAAAAATAACTTCCTCGAATTTCCGTTCAAAAAAGCACCGCTAGGAATTGAACTTGTGGGGCTCTGCCCAAGGTGCCGCGCTGTTACCGGCTGAGCTACGGTGGGGCAAACAGAAGAAACCAAACGAGGGGGTAGATGAAAGTGGCACGATATCAACTAGCTGTGAGCACTGAACATCGTACACCTCAACTCCAAAGACACTCCGAAAAATCTTCTCTCCTTTAAAAA</canonical>
            <polymorphic>GAAAAGAAAATTTAGATAAATCTCAATCGTCGGGAGGCTCTCTCGTTGAGAATCGTTGCAATTTCAGCTATCCTTTGACGGAGTTCCAGCTCGTCTTGTTCCTCAGCAGCGGCTTCTAGAAGAGCTTCTTCTGGGACGAAGATTAGCTGCAAAAATTGATTTTTTTTAAGTTTTCAATTGTTTTCATTATGATTTTTGTTGTTTATGTCTGTACGAAAATTTTGAAAAATTGGCTTCGCGCAATCGCGCTCCGCTGGCTTGACTTGCAGTTCGAAATTTAAACATGGAGATACCGTACCTCTTGGTTATCATCATATTGTTCCGGTAGGTCATTTTCATCGAACGCCTCGAAGACTGGAACCGAGCGACGATCGCGTGGCATATATTCGATTGGTTGGGTTACTGTAACCTTTACTTTGCCTTTGTGCTCTCTCCGTTCTCTAACTCACAGTATTCTGGAAGCTCGACGATCTCATATGCTTCAATGGCTTCCGGGTTGWACTGGTCGATTTCGTTTTGAACGATTTCCGCAAGAACGGCGAGTTGGTCATCGCTGAGACCTGAAAAAAAGATGAATCATTGAATAGGAAACCATTCATTATTTTGAATGTCATGGAATTAGTGAATAGAATTTTTGTTAGGGATGATGAAGAAAAATAAGGAGAAGGATTAGATTCTATACGAAGGATCATGATGACAATAAGGCGTTTTAATAAGGAAAAGAAATGAGTAATTCTCAATTTTTAGGAGTTTAGGTGTCAACAACGACATGAAAAAATAACTTCCTCGAATTTCCGTTCAAAAAAGCACCGCTAGGAATTGAACTTGTGGGGCTCTGCCCAAGGTGCCGCGCTGTTACCGGCTGAGCTACGGTGGGGCAAACAGAAGAAACCAAACGAGGGGGTAGATGAAAGTGGCACGATATCAACTAGCTGTGAGCACTGAACATCGTACACCTCAACTCCAAAGACACTCCGAAAAATCTTCTCTCCTTTAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>452 212 204 84 48</canonical_bands>
                <polymorphic_bands>656 212 84 48</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGTTCTCTAACTCACAGTATTC</pcr_primer_p1>
		<pcr_primer_p2>TCGTATAGAATCTAATCCTTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCGTTCTCTAACTCACAGTATTCTGGAAGCTCGACGATCTCATATGCTTCAATGGCTTCCGGGTTGTACTGGTCGATTTCGTTTTGAACGATTTCCGCAAGAACGGCGAGTTGGTCATCGCTGAGACCTGAAAAAAAGATGAATCATTGAATAGGAAACCATTCATTATTTTGAATGTCATGGAATTAGTGAATAGAATTTTTGTTAGGGATGATGAAGAAAAATAAGGAGAAGGATTAGATTCTATACGA</canonical_amplicon>
		<polymorphic_amplicon>CCGTTCTCTAACTCACAGTATTCTGGAAGCTCGACGATCTCATATGCTTCAATGGCTTCCGGGTTGWACTGGTCGATTTCGTTTTGAACGATTTCCGCAAGAACGGCGAGTTGGTCATCGCTGAGACCTGAAAAAAAGATGAATCATTGAATAGGAAACCATTCATTATTTTGAATGTCATGGAATTAGTGAATAGAATTTTTGTTAGGGATGATGAAGAAAAATAAGGAGAAGGATTAGATTCTATACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24028</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>341402</contig_pos>
        <strand>+</strand>
        <context>GAGAAGCCAT[A/C]AMGTGCTTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATAAAAACATTTTGTAAAATCAAATTTCTATGATTTCAAAGAGAAGCCAT</left_flank>
        <right_flank>AAGTGCTTAATTTGTTAGTTAGGGATCGAAGTCCCGATGAAATAGGAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACCTTAGTACCGCGTAATTATGCGCGTCCCTGTGGGATGTTCCTCGGTTTATAAAAATTGTGGGCATCTGAAAGCAGAGTCTCTAGGTTCAAATAATTTCTTAGTTTTTATTTTCTTTTAACATATTTTTCAATAAAAAAATTTCCTTATGATGACCACCAGCTTTTTCCAGACATCCCCCTTGTTTCCACAAAAATACTCATGAATTTCGAATAGTATTTTTCTTTTTCTCCTGCATATTTTCTAGGGAAAAAGCTAGAAAACGCCCCGTTTTTTCTCTTTTCTCTAATTTCTAATTCAAAGTTTCTTCTTTTTTTTCTACTCCCCAAATCCAAGAACCGCATCTTCTTCTTTTTTCTTCAAAATGTACTTTCCGGTTTTTTCTTTGCTTTCAACATGCTCCATGAACCCCTTGAGAGAACGAAAGCTCAAAAATCTTCTTTTTCCATAAAAACATTTTGTAAAATCAAATTTCTATGATTTCAAAGAGAAGCCATAAAGTGCTTAATTTGTTAGTTAGGGATCGAAGTCCCGATGAAATAGGAAATGTCAAAATTTTAGTTTTCTTATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGAGAGATGGGAATTAGTATGCAAAAACGTTTTTTTTTCTTCGTTTCGAATTCGGACAAGGGTTATGGTAGCCAGAGAATAACCGTTGGCCTTTCAGGGGTCAAAAAGTGACGAAAAAGGCTTTCATCTTATACGACTTCGCACGCTACTTTCGCTGTGACGTTCGTGGTGTAGTGGCTAACACGTAGTGGTTTTGCCCATCGCGGGTTCGAGTCCGCTAGGTGGCAACTTTTTTTTTCGGTTTTTTTCTATAGTTCAAATGTGACCAGAAGAGCTCAGAGGAATAGAATTAAGGATAGTCATCAAATTCCTAGAATGCCGACATTTGACACATCTGGCAATCGGATCTTCTAGCACTTTGGATTATCCCTAGAATCTGAATTCCTCAACAAAAAAA</canonical>
            <polymorphic>AAACCTTAGTACCGCGTAATTATGCGCGTCCCTGTGGGATGTTCCTCGGTTTATAAAAATTGTGGGCATCTGAAAGCAGAGTCTCTAGGTTCAAATAATTTCTTAGTTTTTATTTTCTTTTAACATATTTTTCAATAAAAAAATTTCCTTATGATGACCACCAGCTTTTTCCAGACATCCCCCTTGTTTCCACAAAAATACTCATGAATTTCGAATAGTATTTTTCTTTTTCTCCTGCATATTTTCTAGGGAAAAAGCTAGAAAACGCCCCGTTTTTTCTCTTTTCTCTAATTTCTAATTCAAAGTTTCTTCTTTTTTTTCTACTCCCCAAATCCAAGAACCGCATCTTCTTCTTTTTTCTTCAAAATGTACTTTCCGGTTTTTTCTTTGCTTTCAACATGCTCCATGAACCCCTTGAGAGAACGAAAGCTCAAAAATCTTCTTTTTCCATAAAAACATTTTGTAAAATCAAATTTCTATGATTTCAAAGAGAAGCCATMAAGTGCTTAATTTGTTAGTTAGGGATCGAAGTCCCGATGAAATAGGAAATGTCAAAATTTTAGTTTTCTTATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGAGAGATGGGAATTAGTATGCAAAAACGTTTTTTTTTCTTCGTTTCGAATTCGGACAAGGGTTATGGTAGCCAGAGAATAACCGTTGGCCTTTCAGGGGTCAAAAAGTGACGAAAAAGGCTTTCATCTTATACGACTTCGCACGCTACTTTCGCTGTGACGTTCGTGGTGTAGTGGCTAACACGTAGTGGTTTTGCCCATCGCGGGTTCGAGTCCGCTAGGTGGCAACTTTTTTTTTCGGTTTTTTTCTATAGTTCAAATGTGACCAGAAGAGCTCAGAGGAATAGAATTAAGGATAGTCATCAAATTCCTAGAATGCCGACATTTGACACATCTGGCAATCGGATCTTCTAGCACTTTGGATTATCCCTAGAATCTGAATTCCTCAACAAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAAATCTTCTTTTTCCATAA</pcr_primer_p1>
		<pcr_primer_p2>TTATTCTCTGGCTACCATAACC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TCAAAAATCTTCTTTTTCCATAAAAACATTTTGTAAAATCAAATTTCTATGATTTCAAAGAGAAGCCATAAAGTGCTTAATTTGTTAGTTAGGGATCGAAGTCCCGATGAAATAGGAAATGTCAAAATTTTAGTTTTCTTATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGAGAGATGGGAATTAGTATGCAAAAACGTTTTTTTTTCTTCGTTTCGAATTCGGACAAGGGTTATGGTAGCCAGAGAATAA</canonical_amplicon>
		<polymorphic_amplicon>TCAAAAATCTTCTTTTTCCATAAAAACATTTTGTAAAATCAAATTTCTATGATTTCAAAGAGAAGCCATMAAGTGCTTAATTTGTTAGTTAGGGATCGAAGTCCCGATGAAATAGGAAATGTCAAAATTTTAGTTTTCTTATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGAGAGATGGGAATTAGTATGCAAAAACGTTTTTTTTTCTTCGTTTCGAATTCGGACAAGGGTTATGGTAGCCAGAGAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24029</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>341404</contig_pos>
        <strand>+</strand>
        <context>GAAGCCATMA[A/C]GTGCTTAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAAACATTTTGTAAAATCAAATTTCTATGATTTCAAAGAGAAGCCATAA</left_flank>
        <right_flank>GTGCTTAATTTGTTAGTTAGGGATCGAAGTCCCGATGAAATAGGAAATGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTTAGTACCGCGTAATTATGCGCGTCCCTGTGGGATGTTCCTCGGTTTATAAAAATTGTGGGCATCTGAAAGCAGAGTCTCTAGGTTCAAATAATTTCTTAGTTTTTATTTTCTTTTAACATATTTTTCAATAAAAAAATTTCCTTATGATGACCACCAGCTTTTTCCAGACATCCCCCTTGTTTCCACAAAAATACTCATGAATTTCGAATAGTATTTTTCTTTTTCTCCTGCATATTTTCTAGGGAAAAAGCTAGAAAACGCCCCGTTTTTTCTCTTTTCTCTAATTTCTAATTCAAAGTTTCTTCTTTTTTTTCTACTCCCCAAATCCAAGAACCGCATCTTCTTCTTTTTTCTTCAAAATGTACTTTCCGGTTTTTTCTTTGCTTTCAACATGCTCCATGAACCCCTTGAGAGAACGAAAGCTCAAAAATCTTCTTTTTCCATAAAAACATTTTGTAAAATCAAATTTCTATGATTTCAAAGAGAAGCCATAAAGTGCTTAATTTGTTAGTTAGGGATCGAAGTCCCGATGAAATAGGAAATGTCAAAATTTTAGTTTTCTTATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGAGAGATGGGAATTAGTATGCAAAAACGTTTTTTTTTCTTCGTTTCGAATTCGGACAAGGGTTATGGTAGCCAGAGAATAACCGTTGGCCTTTCAGGGGTCAAAAAGTGACGAAAAAGGCTTTCATCTTATACGACTTCGCACGCTACTTTCGCTGTGACGTTCGTGGTGTAGTGGCTAACACGTAGTGGTTTTGCCCATCGCGGGTTCGAGTCCGCTAGGTGGCAACTTTTTTTTTCGGTTTTTTTCTATAGTTCAAATGTGACCAGAAGAGCTCAGAGGAATAGAATTAAGGATAGTCATCAAATTCCTAGAATGCCGACATTTGACACATCTGGCAATCGGATCTTCTAGCACTTTGGATTATCCCTAGAATCTGAATTCCTCAACAAAAAAACC</canonical>
            <polymorphic>ACCTTAGTACCGCGTAATTATGCGCGTCCCTGTGGGATGTTCCTCGGTTTATAAAAATTGTGGGCATCTGAAAGCAGAGTCTCTAGGTTCAAATAATTTCTTAGTTTTTATTTTCTTTTAACATATTTTTCAATAAAAAAATTTCCTTATGATGACCACCAGCTTTTTCCAGACATCCCCCTTGTTTCCACAAAAATACTCATGAATTTCGAATAGTATTTTTCTTTTTCTCCTGCATATTTTCTAGGGAAAAAGCTAGAAAACGCCCCGTTTTTTCTCTTTTCTCTAATTTCTAATTCAAAGTTTCTTCTTTTTTTTCTACTCCCCAAATCCAAGAACCGCATCTTCTTCTTTTTTCTTCAAAATGTACTTTCCGGTTTTTTCTTTGCTTTCAACATGCTCCATGAACCCCTTGAGAGAACGAAAGCTCAAAAATCTTCTTTTTCCATAAAAACATTTTGTAAAATCAAATTTCTATGATTTCAAAGAGAAGCCATAAMGTGCTTAATTTGTTAGTTAGGGATCGAAGTCCCGATGAAATAGGAAATGTCAAAATTTTAGTTTTCTTATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGAGAGATGGGAATTAGTATGCAAAAACGTTTTTTTTTCTTCGTTTCGAATTCGGACAAGGGTTATGGTAGCCAGAGAATAACCGTTGGCCTTTCAGGGGTCAAAAAGTGACGAAAAAGGCTTTCATCTTATACGACTTCGCACGCTACTTTCGCTGTGACGTTCGTGGTGTAGTGGCTAACACGTAGTGGTTTTGCCCATCGCGGGTTCGAGTCCGCTAGGTGGCAACTTTTTTTTTCGGTTTTTTTCTATAGTTCAAATGTGACCAGAAGAGCTCAGAGGAATAGAATTAAGGATAGTCATCAAATTCCTAGAATGCCGACATTTGACACATCTGGCAATCGGATCTTCTAGCACTTTGGATTATCCCTAGAATCTGAATTCCTCAACAAAAAAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAAATCTTCTTTTTCCATAA</pcr_primer_p1>
		<pcr_primer_p2>TTATTCTCTGGCTACCATAACC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TCAAAAATCTTCTTTTTCCATAAAAACATTTTGTAAAATCAAATTTCTATGATTTCAAAGAGAAGCCATAAAGTGCTTAATTTGTTAGTTAGGGATCGAAGTCCCGATGAAATAGGAAATGTCAAAATTTTAGTTTTCTTATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGAGAGATGGGAATTAGTATGCAAAAACGTTTTTTTTTCTTCGTTTCGAATTCGGACAAGGGTTATGGTAGCCAGAGAATAA</canonical_amplicon>
		<polymorphic_amplicon>TCAAAAATCTTCTTTTTCCATAAAAACATTTTGTAAAATCAAATTTCTATGATTTCAAAGAGAAGCCATAAMGTGCTTAATTTGTTAGTTAGGGATCGAAGTCCCGATGAAATAGGAAATGTCAAAATTTTAGTTTTCTTATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGAGAGATGGGAATTAGTATGCAAAAACGTTTTTTTTTCTTCGTTTCGAATTCGGACAAGGGTTATGGTAGCCAGAGAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24030</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>341468</contig_pos>
        <strand>+</strand>
        <context>AATTTTAGTT[G/T]TCTTATTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAGTTAGGGATCGAAGTCCCGATGAAATAGGAAATGTCAAAATTTTAGTT</left_flank>
        <right_flank>TCTTATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGAGAGATGGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCTGAAAGCAGAGTCTCTAGGTTCAAATAATTTCTTAGTTTTTATTTTCTTTTAACATATTTTTCAATAAAAAAATTTCCTTATGATGACCACCAGCTTTTTCCAGACATCCCCCTTGTTTCCACAAAAATACTCATGAATTTCGAATAGTATTTTTCTTTTTCTCCTGCATATTTTCTAGGGAAAAAGCTAGAAAACGCCCCGTTTTTTCTCTTTTCTCTAATTTCTAATTCAAAGTTTCTTCTTTTTTTTCTACTCCCCAAATCCAAGAACCGCATCTTCTTCTTTTTTCTTCAAAATGTACTTTCCGGTTTTTTCTTTGCTTTCAACATGCTCCATGAACCCCTTGAGAGAACGAAAGCTCAAAAATCTTCTTTTTCCATAAAAACATTTTGTAAAATCAAATTTCTATGATTTCAAAGAGAAGCCATAAAGTGCTTAATTTGTTAGTTAGGGATCGAAGTCCCGATGAAATAGGAAATGTCAAAATTTTAGTTTTCTTATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGAGAGATGGGAATTAGTATGCAAAAACGTTTTTTTTTCTTCGTTTCGAATTCGGACAAGGGTTATGGTAGCCAGAGAATAACCGTTGGCCTTTCAGGGGTCAAAAAGTGACGAAAAAGGCTTTCATCTTATACGACTTCGCACGCTACTTTCGCTGTGACGTTCGTGGTGTAGTGGCTAACACGTAGTGGTTTTGCCCATCGCGGGTTCGAGTCCGCTAGGTGGCAACTTTTTTTTTCGGTTTTTTTCTATAGTTCAAATGTGACCAGAAGAGCTCAGAGGAATAGAATTAAGGATAGTCATCAAATTCCTAGAATGCCGACATTTGACACATCTGGCAATCGGATCTTCTAGCACTTTGGATTATCCCTAGAATCTGAATTCCTCAACAAAAAAACCCTTCACATTGTGTTTTTAACATGTCAAAGCAATGTATACAAGATGTCGTGTTGCAATTTGACCG</canonical>
            <polymorphic>CATCTGAAAGCAGAGTCTCTAGGTTCAAATAATTTCTTAGTTTTTATTTTCTTTTAACATATTTTTCAATAAAAAAATTTCCTTATGATGACCACCAGCTTTTTCCAGACATCCCCCTTGTTTCCACAAAAATACTCATGAATTTCGAATAGTATTTTTCTTTTTCTCCTGCATATTTTCTAGGGAAAAAGCTAGAAAACGCCCCGTTTTTTCTCTTTTCTCTAATTTCTAATTCAAAGTTTCTTCTTTTTTTTCTACTCCCCAAATCCAAGAACCGCATCTTCTTCTTTTTTCTTCAAAATGTACTTTCCGGTTTTTTCTTTGCTTTCAACATGCTCCATGAACCCCTTGAGAGAACGAAAGCTCAAAAATCTTCTTTTTCCATAAAAACATTTTGTAAAATCAAATTTCTATGATTTCAAAGAGAAGCCATAAAGTGCTTAATTTGTTAGTTAGGGATCGAAGTCCCGATGAAATAGGAAATGTCAAAATTTTAGTTKTCTTATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGAGAGATGGGAATTAGTATGCAAAAACGTTTTTTTTTCTTCGTTTCGAATTCGGACAAGGGTTATGGTAGCCAGAGAATAACCGTTGGCCTTTCAGGGGTCAAAAAGTGACGAAAAAGGCTTTCATCTTATACGACTTCGCACGCTACTTTCGCTGTGACGTTCGTGGTGTAGTGGCTAACACGTAGTGGTTTTGCCCATCGCGGGTTCGAGTCCGCTAGGTGGCAACTTTTTTTTTCGGTTTTTTTCTATAGTTCAAATGTGACCAGAAGAGCTCAGAGGAATAGAATTAAGGATAGTCATCAAATTCCTAGAATGCCGACATTTGACACATCTGGCAATCGGATCTTCTAGCACTTTGGATTATCCCTAGAATCTGAATTCCTCAACAAAAAAACCCTTCACATTGTGTTTTTAACATGTCAAAGCAATGTATACAAGATGTCGTGTTGCAATTTGACCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAAATCTTCTTTTTCCATAA</pcr_primer_p1>
		<pcr_primer_p2>TTATTCTCTGGCTACCATAACC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TCAAAAATCTTCTTTTTCCATAAAAACATTTTGTAAAATCAAATTTCTATGATTTCAAAGAGAAGCCATAAAGTGCTTAATTTGTTAGTTAGGGATCGAAGTCCCGATGAAATAGGAAATGTCAAAATTTTAGTTTTCTTATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGAGAGATGGGAATTAGTATGCAAAAACGTTTTTTTTTCTTCGTTTCGAATTCGGACAAGGGTTATGGTAGCCAGAGAATAA</canonical_amplicon>
		<polymorphic_amplicon>TCAAAAATCTTCTTTTTCCATAAAAACATTTTGTAAAATCAAATTTCTATGATTTCAAAGAGAAGCCATAAAGTGCTTAATTTGTTAGTTAGGGATCGAAGTCCCGATGAAATAGGAAATGTCAAAATTTTAGTTKTCTTATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGAGAGATGGGAATTAGTATGCAAAAACGTTTTTTTTTCTTCGTTTCGAATTCGGACAAGGGTTATGGTAGCCAGAGAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24031</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>341509</contig_pos>
        <strand>+</strand>
        <context>GGGAGAAGGA[A/G]AGATGGGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTAGTTTTCTTATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGA</left_flank>
        <right_flank>AGATGGGAATTAGTATGCAAAAACGTTTTTTTTTCTTCGTTTCGAATTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTATTTTCTTTTAACATATTTTTCAATAAAAAAATTTCCTTATGATGACCACCAGCTTTTTCCAGACATCCCCCTTGTTTCCACAAAAATACTCATGAATTTCGAATAGTATTTTTCTTTTTCTCCTGCATATTTTCTAGGGAAAAAGCTAGAAAACGCCCCGTTTTTTCTCTTTTCTCTAATTTCTAATTCAAAGTTTCTTCTTTTTTTTCTACTCCCCAAATCCAAGAACCGCATCTTCTTCTTTTTTCTTCAAAATGTACTTTCCGGTTTTTTCTTTGCTTTCAACATGCTCCATGAACCCCTTGAGAGAACGAAAGCTCAAAAATCTTCTTTTTCCATAAAAACATTTTGTAAAATCAAATTTCTATGATTTCAAAGAGAAGCCATAAAGTGCTTAATTTGTTAGTTAGGGATCGAAGTCCCGATGAAATAGGAAATGTCAAAATTTTAGTTTTCTTATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGAGAGATGGGAATTAGTATGCAAAAACGTTTTTTTTTCTTCGTTTCGAATTCGGACAAGGGTTATGGTAGCCAGAGAATAACCGTTGGCCTTTCAGGGGTCAAAAAGTGACGAAAAAGGCTTTCATCTTATACGACTTCGCACGCTACTTTCGCTGTGACGTTCGTGGTGTAGTGGCTAACACGTAGTGGTTTTGCCCATCGCGGGTTCGAGTCCGCTAGGTGGCAACTTTTTTTTTCGGTTTTTTTCTATAGTTCAAATGTGACCAGAAGAGCTCAGAGGAATAGAATTAAGGATAGTCATCAAATTCCTAGAATGCCGACATTTGACACATCTGGCAATCGGATCTTCTAGCACTTTGGATTATCCCTAGAATCTGAATTCCTCAACAAAAAAACCCTTCACATTGTGTTTTTAACATGTCAAAGCAATGTATACAAGATGTCGTGTTGCAATTTGACCGGAAATGCGTTGTCGAGAAAAATGGAAGCAGGTGCTCTTTTG</canonical>
            <polymorphic>TTTTATTTTCTTTTAACATATTTTTCAATAAAAAAATTTCCTTATGATGACCACCAGCTTTTTCCAGACATCCCCCTTGTTTCCACAAAAATACTCATGAATTTCGAATAGTATTTTTCTTTTTCTCCTGCATATTTTCTAGGGAAAAAGCTAGAAAACGCCCCGTTTTTTCTCTTTTCTCTAATTTCTAATTCAAAGTTTCTTCTTTTTTTTCTACTCCCCAAATCCAAGAACCGCATCTTCTTCTTTTTTCTTCAAAATGTACTTTCCGGTTTTTTCTTTGCTTTCAACATGCTCCATGAACCCCTTGAGAGAACGAAAGCTCAAAAATCTTCTTTTTCCATAAAAACATTTTGTAAAATCAAATTTCTATGATTTCAAAGAGAAGCCATAAAGTGCTTAATTTGTTAGTTAGGGATCGAAGTCCCGATGAAATAGGAAATGTCAAAATTTTAGTTTTCTTATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGARAGATGGGAATTAGTATGCAAAAACGTTTTTTTTTCTTCGTTTCGAATTCGGACAAGGGTTATGGTAGCCAGAGAATAACCGTTGGCCTTTCAGGGGTCAAAAAGTGACGAAAAAGGCTTTCATCTTATACGACTTCGCACGCTACTTTCGCTGTGACGTTCGTGGTGTAGTGGCTAACACGTAGTGGTTTTGCCCATCGCGGGTTCGAGTCCGCTAGGTGGCAACTTTTTTTTTCGGTTTTTTTCTATAGTTCAAATGTGACCAGAAGAGCTCAGAGGAATAGAATTAAGGATAGTCATCAAATTCCTAGAATGCCGACATTTGACACATCTGGCAATCGGATCTTCTAGCACTTTGGATTATCCCTAGAATCTGAATTCCTCAACAAAAAAACCCTTCACATTGTGTTTTTAACATGTCAAAGCAATGTATACAAGATGTCGTGTTGCAATTTGACCGGAAATGCGTTGTCGAGAAAAATGGAAGCAGGTGCTCTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAAATCTTCTTTTTCCATAA</pcr_primer_p1>
		<pcr_primer_p2>TTATTCTCTGGCTACCATAACC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TCAAAAATCTTCTTTTTCCATAAAAACATTTTGTAAAATCAAATTTCTATGATTTCAAAGAGAAGCCATAAAGTGCTTAATTTGTTAGTTAGGGATCGAAGTCCCGATGAAATAGGAAATGTCAAAATTTTAGTTTTCTTATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGAGAGATGGGAATTAGTATGCAAAAACGTTTTTTTTTCTTCGTTTCGAATTCGGACAAGGGTTATGGTAGCCAGAGAATAA</canonical_amplicon>
		<polymorphic_amplicon>TCAAAAATCTTCTTTTTCCATAAAAACATTTTGTAAAATCAAATTTCTATGATTTCAAAGAGAAGCCATAAAGTGCTTAATTTGTTAGTTAGGGATCGAAGTCCCGATGAAATAGGAAATGTCAAAATTTTAGTTTTCTTATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGARAGATGGGAATTAGTATGCAAAAACGTTTTTTTTTCTTCGTTTCGAATTCGGACAAGGGTTATGGTAGCCAGAGAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24032</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>341522</contig_pos>
        <strand>+</strand>
        <context>ATGGGAATTA[G/T]TATGCAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGAGAGATGGGAATTA</left_flank>
        <right_flank>TATGCAAAAACGTTTTTTTTTCTTCGTTTCGAATTCGGACAAGGGTTATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACATATTTTTCAATAAAAAAATTTCCTTATGATGACCACCAGCTTTTTCCAGACATCCCCCTTGTTTCCACAAAAATACTCATGAATTTCGAATAGTATTTTTCTTTTTCTCCTGCATATTTTCTAGGGAAAAAGCTAGAAAACGCCCCGTTTTTTCTCTTTTCTCTAATTTCTAATTCAAAGTTTCTTCTTTTTTTTCTACTCCCCAAATCCAAGAACCGCATCTTCTTCTTTTTTCTTCAAAATGTACTTTCCGGTTTTTTCTTTGCTTTCAACATGCTCCATGAACCCCTTGAGAGAACGAAAGCTCAAAAATCTTCTTTTTCCATAAAAACATTTTGTAAAATCAAATTTCTATGATTTCAAAGAGAAGCCATAAAGTGCTTAATTTGTTAGTTAGGGATCGAAGTCCCGATGAAATAGGAAATGTCAAAATTTTAGTTTTCTTATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGAGAGATGGGAATTAGTATGCAAAAACGTTTTTTTTTCTTCGTTTCGAATTCGGACAAGGGTTATGGTAGCCAGAGAATAACCGTTGGCCTTTCAGGGGTCAAAAAGTGACGAAAAAGGCTTTCATCTTATACGACTTCGCACGCTACTTTCGCTGTGACGTTCGTGGTGTAGTGGCTAACACGTAGTGGTTTTGCCCATCGCGGGTTCGAGTCCGCTAGGTGGCAACTTTTTTTTTCGGTTTTTTTCTATAGTTCAAATGTGACCAGAAGAGCTCAGAGGAATAGAATTAAGGATAGTCATCAAATTCCTAGAATGCCGACATTTGACACATCTGGCAATCGGATCTTCTAGCACTTTGGATTATCCCTAGAATCTGAATTCCTCAACAAAAAAACCCTTCACATTGTGTTTTTAACATGTCAAAGCAATGTATACAAGATGTCGTGTTGCAATTTGACCGGAAATGCGTTGTCGAGAAAAATGGAAGCAGGTGCTCTTTTGAAACCTTTCTAGA</canonical>
            <polymorphic>TAACATATTTTTCAATAAAAAAATTTCCTTATGATGACCACCAGCTTTTTCCAGACATCCCCCTTGTTTCCACAAAAATACTCATGAATTTCGAATAGTATTTTTCTTTTTCTCCTGCATATTTTCTAGGGAAAAAGCTAGAAAACGCCCCGTTTTTTCTCTTTTCTCTAATTTCTAATTCAAAGTTTCTTCTTTTTTTTCTACTCCCCAAATCCAAGAACCGCATCTTCTTCTTTTTTCTTCAAAATGTACTTTCCGGTTTTTTCTTTGCTTTCAACATGCTCCATGAACCCCTTGAGAGAACGAAAGCTCAAAAATCTTCTTTTTCCATAAAAACATTTTGTAAAATCAAATTTCTATGATTTCAAAGAGAAGCCATAAAGTGCTTAATTTGTTAGTTAGGGATCGAAGTCCCGATGAAATAGGAAATGTCAAAATTTTAGTTTTCTTATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGAGAGATGGGAATTAKTATGCAAAAACGTTTTTTTTTCTTCGTTTCGAATTCGGACAAGGGTTATGGTAGCCAGAGAATAACCGTTGGCCTTTCAGGGGTCAAAAAGTGACGAAAAAGGCTTTCATCTTATACGACTTCGCACGCTACTTTCGCTGTGACGTTCGTGGTGTAGTGGCTAACACGTAGTGGTTTTGCCCATCGCGGGTTCGAGTCCGCTAGGTGGCAACTTTTTTTTTCGGTTTTTTTCTATAGTTCAAATGTGACCAGAAGAGCTCAGAGGAATAGAATTAAGGATAGTCATCAAATTCCTAGAATGCCGACATTTGACACATCTGGCAATCGGATCTTCTAGCACTTTGGATTATCCCTAGAATCTGAATTCCTCAACAAAAAAACCCTTCACATTGTGTTTTTAACATGTCAAAGCAATGTATACAAGATGTCGTGTTGCAATTTGACCGGAAATGCGTTGTCGAGAAAAATGGAAGCAGGTGCTCTTTTGAAACCTTTCTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAAATCTTCTTTTTCCATAA</pcr_primer_p1>
		<pcr_primer_p2>TTATTCTCTGGCTACCATAACC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TCAAAAATCTTCTTTTTCCATAAAAACATTTTGTAAAATCAAATTTCTATGATTTCAAAGAGAAGCCATAAAGTGCTTAATTTGTTAGTTAGGGATCGAAGTCCCGATGAAATAGGAAATGTCAAAATTTTAGTTTTCTTATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGAGAGATGGGAATTAGTATGCAAAAACGTTTTTTTTTCTTCGTTTCGAATTCGGACAAGGGTTATGGTAGCCAGAGAATAA</canonical_amplicon>
		<polymorphic_amplicon>TCAAAAATCTTCTTTTTCCATAAAAACATTTTGTAAAATCAAATTTCTATGATTTCAAAGAGAAGCCATAAAGTGCTTAATTTGTTAGTTAGGGATCGAAGTCCCGATGAAATAGGAAATGTCAAAATTTTAGTTTTCTTATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGAGAGATGGGAATTAKTATGCAAAAACGTTTTTTTTTCTTCGTTTCGAATTCGGACAAGGGTTATGGTAGCCAGAGAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24033</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>341552</contig_pos>
        <strand>+</strand>
        <context>TTCTTCGTTT[A/T]GAATTCGGAC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAAGGAGAGATGGGAATTAGTATGCAAAAACGTTTTTTTTTCTTCGTTT</left_flank>
        <right_flank>GAATTCGGACAAGGGTTATGGTAGCCAGAGAATAACCGTTGGCCTTTCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGATGACCACCAGCTTTTTCCAGACATCCCCCTTGTTTCCACAAAAATACTCATGAATTTCGAATAGTATTTTTCTTTTTCTCCTGCATATTTTCTAGGGAAAAAGCTAGAAAACGCCCCGTTTTTTCTCTTTTCTCTAATTTCTAATTCAAAGTTTCTTCTTTTTTTTCTACTCCCCAAATCCAAGAACCGCATCTTCTTCTTTTTTCTTCAAAATGTACTTTCCGGTTTTTTCTTTGCTTTCAACATGCTCCATGAACCCCTTGAGAGAACGAAAGCTCAAAAATCTTCTTTTTCCATAAAAACATTTTGTAAAATCAAATTTCTATGATTTCAAAGAGAAGCCATAAAGTGCTTAATTTGTTAGTTAGGGATCGAAGTCCCGATGAAATAGGAAATGTCAAAATTTTAGTTTTCTTATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGAGAGATGGGAATTAGTATGCAAAAACGTTTTTTTTTCTTCGTTTCGAATTCGGACAAGGGTTATGGTAGCCAGAGAATAACCGTTGGCCTTTCAGGGGTCAAAAAGTGACGAAAAAGGCTTTCATCTTATACGACTTCGCACGCTACTTTCGCTGTGACGTTCGTGGTGTAGTGGCTAACACGTAGTGGTTTTGCCCATCGCGGGTTCGAGTCCGCTAGGTGGCAACTTTTTTTTTCGGTTTTTTTCTATAGTTCAAATGTGACCAGAAGAGCTCAGAGGAATAGAATTAAGGATAGTCATCAAATTCCTAGAATGCCGACATTTGACACATCTGGCAATCGGATCTTCTAGCACTTTGGATTATCCCTAGAATCTGAATTCCTCAACAAAAAAACCCTTCACATTGTGTTTTTAACATGTCAAAGCAATGTATACAAGATGTCGTGTTGCAATTTGACCGGAAATGCGTTGTCGAGAAAAATGGAAGCAGGTGCTCTTTTGAAACCTTTCTAGAAACCTCCCTCAGACAATAGAAATGACTTTT</canonical>
            <polymorphic>ATGATGACCACCAGCTTTTTCCAGACATCCCCCTTGTTTCCACAAAAATACTCATGAATTTCGAATAGTATTTTTCTTTTTCTCCTGCATATTTTCTAGGGAAAAAGCTAGAAAACGCCCCGTTTTTTCTCTTTTCTCTAATTTCTAATTCAAAGTTTCTTCTTTTTTTTCTACTCCCCAAATCCAAGAACCGCATCTTCTTCTTTTTTCTTCAAAATGTACTTTCCGGTTTTTTCTTTGCTTTCAACATGCTCCATGAACCCCTTGAGAGAACGAAAGCTCAAAAATCTTCTTTTTCCATAAAAACATTTTGTAAAATCAAATTTCTATGATTTCAAAGAGAAGCCATAAAGTGCTTAATTTGTTAGTTAGGGATCGAAGTCCCGATGAAATAGGAAATGTCAAAATTTTAGTTTTCTTATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGAGAGATGGGAATTAGTATGCAAAAACGTTTTTTTTTCTTCGTTTWGAATTCGGACAAGGGTTATGGTAGCCAGAGAATAACCGTTGGCCTTTCAGGGGTCAAAAAGTGACGAAAAAGGCTTTCATCTTATACGACTTCGCACGCTACTTTCGCTGTGACGTTCGTGGTGTAGTGGCTAACACGTAGTGGTTTTGCCCATCGCGGGTTCGAGTCCGCTAGGTGGCAACTTTTTTTTTCGGTTTTTTTCTATAGTTCAAATGTGACCAGAAGAGCTCAGAGGAATAGAATTAAGGATAGTCATCAAATTCCTAGAATGCCGACATTTGACACATCTGGCAATCGGATCTTCTAGCACTTTGGATTATCCCTAGAATCTGAATTCCTCAACAAAAAAACCCTTCACATTGTGTTTTTAACATGTCAAAGCAATGTATACAAGATGTCGTGTTGCAATTTGACCGGAAATGCGTTGTCGAGAAAAATGGAAGCAGGTGCTCTTTTGAAACCTTTCTAGAAACCTCCCTCAGACAATAGAAATGACTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 438 61</canonical_bands>
                <polymorphic_bands>939 61</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>315 266 163 123 71 62</canonical_bands>
                <polymorphic_bands>315 286 266 71 62</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTGTTAGTTAGGGATCGAAGT</pcr_primer_p1>
		<pcr_primer_p2>GCGAAGTCGTATAAGATGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>ATTTGTTAGTTAGGGATCGAAGTCCCGATGAAATAGGAAATGTCAAAATTTTAGTTTTCTTATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGAGAGATGGGAATTAGTATGCAAAAACGTTTTTTTTTCTTCGTTTCGAATTCGGACAAGGGTTATGGTAGCCAGAGAATAACCGTTGGCCTTTCAGGGGTCAAAAAGTGACGAAAAAGGCTTTCATCTTATACGACTTCGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTGTTAGTTAGGGATCGAAGTCCCGATGAAATAGGAAATGTCAAAATTTTAGTTTTCTTATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGAGAGATGGGAATTAGTATGCAAAAACGTTTTTTTTTCTTCGTTTWGAATTCGGACAAGGGTTATGGTAGCCAGAGAATAACCGTTGGCCTTTCAGGGGTCAAAAAGTGACGAAAAAGGCTTTCATCTTATACGACTTCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24034</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>341754</contig_pos>
        <strand>+</strand>
        <context>cggttttttt[G/T]trtagttcaa</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATCGCGGGTTCGAGTCCGCTAGGTGGCAACTTTTTTTTTCGGTTTTTTT</left_flank>
        <right_flank>TATAGTTCAAATGTGACCAGAAGAGCTCAGAGGAATAGAATTAAGGATAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTTTCTTCAAAATGTACTTTCCGGTTTTTTCTTTGCTTTCAACATGCTCCATGAACCCCTTGAGAGAACGAAAGCTCAAAAATCTTCTTTTTCCATAAAAACATTTTGTAAAATCAAATTTCTATGATTTCAAAGAGAAGCCATAAAGTGCTTAATTTGTTAGTTAGGGATCGAAGTCCCGATGAAATAGGAAATGTCAAAATTTTAGTTTTCTTATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGAGAGATGGGAATTAGTATGCAAAAACGTTTTTTTTTCTTCGTTTCGAATTCGGACAAGGGTTATGGTAGCCAGAGAATAACCGTTGGCCTTTCAGGGGTCAAAAAGTGACGAAAAAGGCTTTCATCTTATACGACTTCGCACGCTACTTTCGCTGTGACGTTCGTGGTGTAGTGGCTAACACGTAGTGGTTTTGCCCATCGCGGGTTCGAGTCCGCTAGGTGGCAACTTTTTTTTTCGGTTTTTTTCTATAGTTCAAATGTGACCAGAAGAGCTCAGAGGAATAGAATTAAGGATAGTCATCAAATTCCTAGAATGCCGACATTTGACACATCTGGCAATCGGATCTTCTAGCACTTTGGATTATCCCTAGAATCTGAATTCCTCAACAAAAAAACCCTTCACATTGTGTTTTTAACATGTCAAAGCAATGTATACAAGATGTCGTGTTGCAATTTGACCGGAAATGCGTTGTCGAGAAAAATGGAAGCAGGTGCTCTTTTGAAACCTTTCTAGAAACCTCCCTCAGACAATAGAAATGACTTTTTCCCATTTCCTGAAAAGAGTTATATTCTATAGAAATGACATAACAATAACCTGATCCGTATCATCTTATCACATTATACATAATGACGTAGCTAACCGGAAATTGTGTCAAGGGGGAGTGAATCAAACATACATTTTTTCTTGACTCAACTCAACGTCATTTGATCTGAAGCTTATTGAACTGGAATCAACAAAAAATTGTG</canonical>
            <polymorphic>CTTTTTTCTTCAAAATGTACTTTCCGGTTTTTTCTTTGCTTTCAACATGCTCCATGAACCCCTTGAGAGAACGAAAGCTCAAAAATCTTCTTTTTCCATAAAAACATTTTGTAAAATCAAATTTCTATGATTTCAAAGAGAAGCCATAAAGTGCTTAATTTGTTAGTTAGGGATCGAAGTCCCGATGAAATAGGAAATGTCAAAATTTTAGTTTTCTTATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGAGAGATGGGAATTAGTATGCAAAAACGTTTTTTTTTCTTCGTTTCGAATTCGGACAAGGGTTATGGTAGCCAGAGAATAACCGTTGGCCTTTCAGGGGTCAAAAAGTGACGAAAAAGGCTTTCATCTTATACGACTTCGCACGCTACTTTCGCTGTGACGTTCGTGGTGTAGTGGCTAACACGTAGTGGTTTTGCCCATCGCGGGTTCGAGTCCGCTAGGTGGCAACTTTTTTTTTCGGTTTTTTTKTATAGTTCAAATGTGACCAGAAGAGCTCAGAGGAATAGAATTAAGGATAGTCATCAAATTCCTAGAATGCCGACATTTGACACATCTGGCAATCGGATCTTCTAGCACTTTGGATTATCCCTAGAATCTGAATTCCTCAACAAAAAAACCCTTCACATTGTGTTTTTAACATGTCAAAGCAATGTATACAAGATGTCGTGTTGCAATTTGACCGGAAATGCGTTGTCGAGAAAAATGGAAGCAGGTGCTCTTTTGAAACCTTTCTAGAAACCTCCCTCAGACAATAGAAATGACTTTTTCCCATTTCCTGAAAAGAGTTATATTCTATAGAAATGACATAACAATAACCTGATCCGTATCATCTTATCACATTATACATAATGACGTAGCTAACCGGAAATTGTGTCAAGGGGGAGTGAATCAAACATACATTTTTTCTTGACTCAACTCAACGTCATTTGATCTGAAGCTTATTGAACTGGAATCAACAAAAAATTGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 325 175</canonical_bands>
                <polymorphic_bands>825 175</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTATGGTAGCCAGAGAATAA</pcr_primer_p1>
		<pcr_primer_p2>AGGAATTTGATGACTATCCTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGTTATGGTAGCCAGAGAATAACCGTTGGCCTTTCAGGGGTCAAAAAGTGACGAAAAAGGCTTTCATCTTATACGACTTCGCACGCTACTTTCGCTGTGACGTTCGTGGTGTAGTGGCTAACACGTAGTGGTTTTGCCCATCGCGGGTTCGAGTCCGCTAGGTGGCAACTTTTTTTTTCGGTTTTTTTCTATAGTTCAAATGTGACCAGAAGAGCTCAGAGGAATAGAATTAAGGATAGTCATCAAATTCCT</canonical_amplicon>
		<polymorphic_amplicon>GGTTATGGTAGCCAGAGAATAACCGTTGGCCTTTCAGGGGTCAAAAAGTGACGAAAAAGGCTTTCATCTTATACGACTTCGCACGCTACTTTCGCTGTGACGTTCGTGGTGTAGTGGCTAACACGTAGTGGTTTTGCCCATCGCGGGTTCGAGTCCGCTAGGTGGCAACTTTTTTTTTCGGTTTTTTTKTATAGTTCAAATGTGACCAGAAGAGCTCAGAGGAATAGAATTAAGGATAGTCATCAAATTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24035</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>341756</contig_pos>
        <strand></strand>
        <context>gtttttttkt[A/G]tagttcaaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGCGGGTTCGAGTCCGCTAGGTGGCAACTTTTTTTTTCGGTTTTTTTCT</left_flank>
        <right_flank>TAGTTCAAATGTGACCAGAAGAGCTCAGAGGAATAGAATTAAGGATAGTC</right_flank>
        <qual_score>35</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTCTTCAAAATGTACTTTCCGGTTTTTTCTTTGCTTTCAACATGCTCCATGAACCCCTTGAGAGAACGAAAGCTCAAAAATCTTCTTTTTCCATAAAAACATTTTGTAAAATCAAATTTCTATGATTTCAAAGAGAAGCCATAAAGTGCTTAATTTGTTAGTTAGGGATCGAAGTCCCGATGAAATAGGAAATGTCAAAATTTTAGTTTTCTTATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGAGAGATGGGAATTAGTATGCAAAAACGTTTTTTTTTCTTCGTTTCGAATTCGGACAAGGGTTATGGTAGCCAGAGAATAACCGTTGGCCTTTCAGGGGTCAAAAAGTGACGAAAAAGGCTTTCATCTTATACGACTTCGCACGCTACTTTCGCTGTGACGTTCGTGGTGTAGTGGCTAACACGTAGTGGTTTTGCCCATCGCGGGTTCGAGTCCGCTAGGTGGCAACTTTTTTTTTCGGTTTTTTTCTATAGTTCAAATGTGACCAGAAGAGCTCAGAGGAATAGAATTAAGGATAGTCATCAAATTCCTAGAATGCCGACATTTGACACATCTGGCAATCGGATCTTCTAGCACTTTGGATTATCCCTAGAATCTGAATTCCTCAACAAAAAAACCCTTCACATTGTGTTTTTAACATGTCAAAGCAATGTATACAAGATGTCGTGTTGCAATTTGACCGGAAATGCGTTGTCGAGAAAAATGGAAGCAGGTGCTCTTTTGAAACCTTTCTAGAAACCTCCCTCAGACAATAGAAATGACTTTTTCCCATTTCCTGAAAAGAGTTATATTCTATAGAAATGACATAACAATAACCTGATCCGTATCATCTTATCACATTATACATAATGACGTAGCTAACCGGAAATTGTGTCAAGGGGGAGTGAATCAAACATACATTTTTTCTTGACTCAACTCAACGTCATTTGATCTGAAGCTTATTGAACTGGAATCAACAAAAAATTGTGTT</canonical>
            <polymorphic>TTTTTCTTCAAAATGTACTTTCCGGTTTTTTCTTTGCTTTCAACATGCTCCATGAACCCCTTGAGAGAACGAAAGCTCAAAAATCTTCTTTTTCCATAAAAACATTTTGTAAAATCAAATTTCTATGATTTCAAAGAGAAGCCATAAAGTGCTTAATTTGTTAGTTAGGGATCGAAGTCCCGATGAAATAGGAAATGTCAAAATTTTAGTTTTCTTATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGAGAGATGGGAATTAGTATGCAAAAACGTTTTTTTTTCTTCGTTTCGAATTCGGACAAGGGTTATGGTAGCCAGAGAATAACCGTTGGCCTTTCAGGGGTCAAAAAGTGACGAAAAAGGCTTTCATCTTATACGACTTCGCACGCTACTTTCGCTGTGACGTTCGTGGTGTAGTGGCTAACACGTAGTGGTTTTGCCCATCGCGGGTTCGAGTCCGCTAGGTGGCAACTTTTTTTTTCGGTTTTTTTCTRTAGTTCAAATGTGACCAGAAGAGCTCAGAGGAATAGAATTAAGGATAGTCATCAAATTCCTAGAATGCCGACATTTGACACATCTGGCAATCGGATCTTCTAGCACTTTGGATTATCCCTAGAATCTGAATTCCTCAACAAAAAAACCCTTCACATTGTGTTTTTAACATGTCAAAGCAATGTATACAAGATGTCGTGTTGCAATTTGACCGGAAATGCGTTGTCGAGAAAAATGGAAGCAGGTGCTCTTTTGAAACCTTTCTAGAAACCTCCCTCAGACAATAGAAATGACTTTTTCCCATTTCCTGAAAAGAGTTATATTCTATAGAAATGACATAACAATAACCTGATCCGTATCATCTTATCACATTATACATAATGACGTAGCTAACCGGAAATTGTGTCAAGGGGGAGTGAATCAAACATACATTTTTTCTTGACTCAACTCAACGTCATTTGATCTGAAGCTTATTGAACTGGAATCAACAAAAAATTGTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>498 325 177</canonical_bands>
                <polymorphic_bands>823 177</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTATGGTAGCCAGAGAATAA</pcr_primer_p1>
		<pcr_primer_p2>AGGAATTTGATGACTATCCTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGTTATGGTAGCCAGAGAATAACCGTTGGCCTTTCAGGGGTCAAAAAGTGACGAAAAAGGCTTTCATCTTATACGACTTCGCACGCTACTTTCGCTGTGACGTTCGTGGTGTAGTGGCTAACACGTAGTGGTTTTGCCCATCGCGGGTTCGAGTCCGCTAGGTGGCAACTTTTTTTTTCGGTTTTTTTCTATAGTTCAAATGTGACCAGAAGAGCTCAGAGGAATAGAATTAAGGATAGTCATCAAATTCCT</canonical_amplicon>
		<polymorphic_amplicon>GGTTATGGTAGCCAGAGAATAACCGTTGGCCTTTCAGGGGTCAAAAAGTGACGAAAAAGGCTTTCATCTTATACGACTTCGCACGCTACTTTCGCTGTGACGTTCGTGGTGTAGTGGCTAACACGTAGTGGTTTTGCCCATCGCGGGTTCGAGTCCGCTAGGTGGCAACTTTTTTTTTCGGTTTTTTTCTRTAGTTCAAATGTGACCAGAAGAGCTCAGAGGAATAGAATTAAGGATAGTCATCAAATTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24036</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>341792</contig_pos>
        <strand></strand>
        <context>CAGAGGAATA[G/T]AATTAAGGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCGGTTTTTTTCTATAGTTCAAATGTGACCAGAAGAGCTCAGAGGAATA</left_flank>
        <right_flank>AATTAAGGATAGTCATCAAATTCCTAGAATGCCGACATTTGACACATCTG</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTCAACATGCTCCATGAACCCCTTGAGAGAACGAAAGCTCAAAAATCTTCTTTTTCCATAAAAACATTTTGTAAAATCAAATTTCTATGATTTCAAAGAGAAGCCATAAAGTGCTTAATTTGTTAGTTAGGGATCGAAGTCCCGATGAAATAGGAAATGTCAAAATTTTAGTTTTCTTATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGAGAGATGGGAATTAGTATGCAAAAACGTTTTTTTTTCTTCGTTTCGAATTCGGACAAGGGTTATGGTAGCCAGAGAATAACCGTTGGCCTTTCAGGGGTCAAAAAGTGACGAAAAAGGCTTTCATCTTATACGACTTCGCACGCTACTTTCGCTGTGACGTTCGTGGTGTAGTGGCTAACACGTAGTGGTTTTGCCCATCGCGGGTTCGAGTCCGCTAGGTGGCAACTTTTTTTTTCGGTTTTTTTCTATAGTTCAAATGTGACCAGAAGAGCTCAGAGGAATAGAATTAAGGATAGTCATCAAATTCCTAGAATGCCGACATTTGACACATCTGGCAATCGGATCTTCTAGCACTTTGGATTATCCCTAGAATCTGAATTCCTCAACAAAAAAACCCTTCACATTGTGTTTTTAACATGTCAAAGCAATGTATACAAGATGTCGTGTTGCAATTTGACCGGAAATGCGTTGTCGAGAAAAATGGAAGCAGGTGCTCTTTTGAAACCTTTCTAGAAACCTCCCTCAGACAATAGAAATGACTTTTTCCCATTTCCTGAAAAGAGTTATATTCTATAGAAATGACATAACAATAACCTGATCCGTATCATCTTATCACATTATACATAATGACGTAGCTAACCGGAAATTGTGTCAAGGGGGAGTGAATCAAACATACATTTTTTCTTGACTCAACTCAACGTCATTTGATCTGAAGCTTATTGAACTGGAATCAACAAAAAATTGTGTTAGAGTACAAATTTTTTGAGTCAGATGACTATTTTGT</canonical>
            <polymorphic>CTTTCAACATGCTCCATGAACCCCTTGAGAGAACGAAAGCTCAAAAATCTTCTTTTTCCATAAAAACATTTTGTAAAATCAAATTTCTATGATTTCAAAGAGAAGCCATAAAGTGCTTAATTTGTTAGTTAGGGATCGAAGTCCCGATGAAATAGGAAATGTCAAAATTTTAGTTTTCTTATTTTGAGTGTTAAAAGAAACAAGATGGGAGAAGGAGAGATGGGAATTAGTATGCAAAAACGTTTTTTTTTCTTCGTTTCGAATTCGGACAAGGGTTATGGTAGCCAGAGAATAACCGTTGGCCTTTCAGGGGTCAAAAAGTGACGAAAAAGGCTTTCATCTTATACGACTTCGCACGCTACTTTCGCTGTGACGTTCGTGGTGTAGTGGCTAACACGTAGTGGTTTTGCCCATCGCGGGTTCGAGTCCGCTAGGTGGCAACTTTTTTTTTCGGTTTTTTTCTATAGTTCAAATGTGACCAGAAGAGCTCAGAGGAATAKAATTAAGGATAGTCATCAAATTCCTAGAATGCCGACATTTGACACATCTGGCAATCGGATCTTCTAGCACTTTGGATTATCCCTAGAATCTGAATTCCTCAACAAAAAAACCCTTCACATTGTGTTTTTAACATGTCAAAGCAATGTATACAAGATGTCGTGTTGCAATTTGACCGGAAATGCGTTGTCGAGAAAAATGGAAGCAGGTGCTCTTTTGAAACCTTTCTAGAAACCTCCCTCAGACAATAGAAATGACTTTTTCCCATTTCCTGAAAAGAGTTATATTCTATAGAAATGACATAACAATAACCTGATCCGTATCATCTTATCACATTATACATAATGACGTAGCTAACCGGAAATTGTGTCAAGGGGGAGTGAATCAAACATACATTTTTTCTTGACTCAACTCAACGTCATTTGATCTGAAGCTTATTGAACTGGAATCAACAAAAAATTGTGTTAGAGTACAAATTTTTTGAGTCAGATGACTATTTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGCTTTCATCTTATACGACTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTGCTAGAAGATCCGATTG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAGGCTTTCATCTTATACGACTTCGCACGCTACTTTCGCTGTGACGTTCGTGGTGTAGTGGCTAACACGTAGTGGTTTTGCCCATCGCGGGTTCGAGTCCGCTAGGTGGCAACTTTTTTTTTCGGTTTTTTTCTATAGTTCAAATGTGACCAGAAGAGCTCAGAGGAATAGAATTAAGGATAGTCATCAAATTCCTAGAATGCCGACATTTGACACATCTGGCAATCGGATCTTCTAGCACTT</canonical_amplicon>
		<polymorphic_amplicon>AAGGCTTTCATCTTATACGACTTCGCACGCTACTTTCGCTGTGACGTTCGTGGTGTAGTGGCTAACACGTAGTGGTTTTGCCCATCGCGGGTTCGAGTCCGCTAGGTGGCAACTTTTTTTTTCGGTTTTTTTCTATAGTTCAAATGTGACCAGAAGAGCTCAGAGGAATAKAATTAAGGATAGTCATCAAATTCCTAGAATGCCGACATTTGACACATCTGGCAATCGGATCTTCTAGCACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24037</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>351227</contig_pos>
        <strand>+</strand>
        <context>GAACGCCCGA[A/G]AAATTCCAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAGCATTGTACTGATGGCTGCCCCCTTCTTCGGCCTCGTGAACGCCCGA</left_flank>
        <right_flank>AAATTCCAAAATCAAGAAGGTGGAGGATACGAGACCTATTTGGATCGGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTCTCCCAATCATAAGGGTCGATCCAAGTGGATTTGCTTTTATCGTAGACTGCCTTGAACGTGTTATAAACTAATTCATAGTTAGGGAAAGAGTAGAATGTACACGACCGAAGCATCTGCTCCACAGCGTCGAAGGAATCTGAAGAATGTTTTTTTTTCAATTAAAAAACTGAAATGAAACAAATCTTACTATCTTTGAAGAGCTCACTGAGTTTGAATTTGAGCTTGCAATTTTTTAATTGCTCATCTTCGAGAGCATACCATGGAAGAGGTTCAACCATCTCAGCGATCATGTACATCAGAGACCAAACATCGTCTATTCTAGCCAAATCAATGTAATCGTGAGCATTTGGTGATGCGTAGACGGGAGTTCCTCTCAACGATGTTATTTTTTTCTTGGGTGGTCGGAACTCTAGATTTGCCGAGTCTGTCGTTTTTTGGCCATCTTTCAGCATTGTACTGATGGCTGCCCCCTTCTTCGGCCTCGTGAACGCCCGAGAAATTCCAAAATCAAGAAGGTGGAGGATACGAGACCTATTTGGATCGGTTGCAGGTCCCATTGCGAAATTCCCTGGTTTTATATCATGGTGCAGGTAGCCATTGTCGTGCATTTGTTTCAGGCTAGAAAGATTATCGAATTTTTCAAGTTATCTTGTCAAAAACTTACACATATAAGCACTGAATACCAATTCGACTCCATGTTCCAGGAGACGAAACGTTTGGATCGGCGCATTTTAGTCGAAGGCTTTTCAAATTGTCGCCCAGAAGATCCATCACCACTACATGACATTTTAAATCCGCACCAGCGAAAATACACTTGGGGAAGTATTTCGCTTTGTTCTCGTCTAGCTTGTTCATGATCTCGATCTTAAATAGAAACAATTTTTTCGAATTCTTAAAGTCACTGCACCTCAATTTTCAACGCCGGCGCCGCCCCATCGACTCTTTTCGGCTCAACTTTCATTGCGAATCGTTTCCCGTCTTTAGACACAACAAATA</canonical>
            <polymorphic>CGTCTCCCAATCATAAGGGTCGATCCAAGTGGATTTGCTTTTATCGTAGACTGCCTTGAACGTGTTATAAACTAATTCATAGTTAGGGAAAGAGTAGAATGTACACGACCGAAGCATCTGCTCCACAGCGTCGAAGGAATCTGAAGAATGTTTTTTTTTCAATTAAAAAACTGAAATGAAACAAATCTTACTATCTTTGAAGAGCTCACTGAGTTTGAATTTGAGCTTGCAATTTTTTAATTGCTCATCTTCGAGAGCATACCATGGAAGAGGTTCAACCATCTCAGCGATCATGTACATCAGAGACCAAACATCGTCTATTCTAGCCAAATCAATGTAATCGTGAGCATTTGGTGATGCGTAGACGGGAGTTCCTCTCAACGATGTTATTTTTTTCTTGGGTGGTCGGAACTCTAGATTTGCCGAGTCTGTCGTTTTTTGGCCATCTTTCAGCATTGTACTGATGGCTGCCCCCTTCTTCGGCCTCGTGAACGCCCGARAAATTCCAAAATCAAGAAGGTGGAGGATACGAGACCTATTTGGATCGGTTGCAGGTCCCATTGCGAAATTCCCTGGTTTTATATCATGGTGCAGGTAGCCATTGTCGTGCATTTGTTTCAGGCTAGAAAGATTATCGAATTTTTCAAGTTATCTTGTCAAAAACTTACACATATAAGCACTGAATACCAATTCGACTCCATGTTCCAGGAGACGAAACGTTTGGATCGGCGCATTTTAGTCGAAGGCTTTTCAAATTGTCGCCCAGAAGATCCATCACCACTACATGACATTTTAAATCCGCACCAGCGAAAATACACTTGGGGAAGTATTTCGCTTTGTTCTCGTCTAGCTTGTTCATGATCTCGATCTTAAATAGAAACAATTTTTTCGAATTCTTAAAGTCACTGCACCTCAATTTTCAACGCCGGCGCCGCCCCATCGACTCTTTTCGGCTCAACTTTCATTGCGAATCGTTTCCCGTCTTTAGACACAACAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATCTTTCAGCATTGTACTGAT</pcr_primer_p1>
		<pcr_primer_p2>TTGGTATTCAGTGCTTATATGTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CATCTTTCAGCATTGTACTGATGGCTGCCCCCTTCTTCGGCCTCGTGAACGCCCGAGAAATTCCAAAATCAAGAAGGTGGAGGATACGAGACCTATTTGGATCGGTTGCAGGTCCCATTGCGAAATTCCCTGGTTTTATATCATGGTGCAGGTAGCCATTGTCGTGCATTTGTTTCAGGCTAGAAAGATTATCGAATTTTTCAAGTTATCTTGTCAAAAACTTACACATATAAGCACTGAATACCAA</canonical_amplicon>
		<polymorphic_amplicon>CATCTTTCAGCATTGTACTGATGGCTGCCCCCTTCTTCGGCCTCGTGAACGCCCGARAAATTCCAAAATCAAGAAGGTGGAGGATACGAGACCTATTTGGATCGGTTGCAGGTCCCATTGCGAAATTCCCTGGTTTTATATCATGGTGCAGGTAGCCATTGTCGTGCATTTGTTTCAGGCTAGAAAGATTATCGAATTTTTCAAGTTATCTTGTCAAAAACTTACACATATAAGCACTGAATACCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24038</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>353217</contig_pos>
        <strand></strand>
        <context>cacctttaac[C/T]ttttttttct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTCTGCACATTTTGATGCAATAAAATTTCACCGTACACCACCTTTAAC</left_flank>
        <right_flank>TTTTTTTTCTCAGACAAGCATAATAATAAAAATTGTGAAAATTAAAGGCG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAATTTGAAAAAATGTTCCATGGGGTACCCACTTGGGTTCAAGCGAGGGGGTCAGAAAGCGCGCCCCAGCAAACTCGTAGGCCAGAAGAAATTTAATAATTTTAAAGTGGACGCGGGTTTGATCTAGATCATGATCTATTTCTTCAAAATCAACTGGTTGCAAGGCGCNNNNNNNNNNTTTTTTCGCTCGTTTTCACTGTTTTTTCAAATTTTCCGATATATCTGGAAGAAAAATTGACAAAAACCTGGAAAACTCTTGAAAAAACCGAAAAAAAAGTGAAAACGAGCGAAAAAATTTTAAAAATTTGAATTCGCGCGCTTTTACTCACCGGGCGGCCTAGAAAAAACCTCGTCCCTAAGGGCTTCCAGCGTATTTTTCGATGCGTTTTTCTCGATGAAGGAATTTTTTTGAATTTTTTCTTTATTTTTATGGGAATCTACATGCATTTCTGCACATTTTGATGCAATAAAATTTCACCGTACACCACCTTTAACCTTTTTTTTCTCAGACAAGCATAATAATAAAAATTGTGAAAATTAAAGGCGCAGTTTAAAGAAAATGCTCTCAGAGATTACGGTAGTGAATGGGTTTCGCAGCGATTTCCAAAAAATCTCGGATTTTTTGTCTGGGCACGCTGTTTTCCCGTTTTTCGGCGTTCTTCTCTGCTTTTTGAACCGAATTTGACTCCCAGACATTCCAGTAATGAGTAGATTCGATGTTGAAGCCATTATCGACTTTGCCAAATTTGAACGCTTGATCGAAGACGCTTTGAATTCGAAAGCCAAATTCCTGCCGAAATGCGTTTTGACCTCCAAACAGCGGCATTCGAAATATGCATTTCTGGTAAATCAGTGGTTTTTTCTGTTTTAATATGCGATATGATTTTCAGGTGCACTGGTCGAATTCCACTGTAGCAGAACGAACATGGGAAACGGAAGAGAGTATCGGAAGTTCACAACAGATGTTACTAGATTTCAAGAGAGCGAAGAAACTAC</canonical>
            <polymorphic>AAAAAAATTTGAAAAAATGTTCCATGGGGTACCCACTTGGGTTCAAGCGAGGGGGTCAGAAAGCGCGCCCCAGCAAACTCGTAGGCCAGAAGAAATTTAATAATTTTAAAGTGGACGCGGGTTTGATCTAGATCATGATCTATTTCTTCAAAATCAACTGGTTGCAAGGCGCNNNNNNNNNNTTTTTTCGCTCGTTTTCACTGTTTTTTCAAATTTTCCGATATATCTGGAAGAAAAATTGACAAAAACCTGGAAAACTCTTGAAAAAACCGAAAAAAAAGTGAAAACGAGCGAAAAAATTTTAAAAATTTGAATTCGCGCGCTTTTACTCACCGGGCGGCCTAGAAAAAACCTCGTCCCTAAGGGCTTCCAGCGTATTTTTCGATGCGTTTTTCTCGATGAAGGAATTTTTTTGAATTTTTTCTTTATTTTTATGGGAATCTACATGCATTTCTGCACATTTTGATGCAATAAAATTTCACCGTACACCACCTTTAACYTTTTTTTTCTCAGACAAGCATAATAATAAAAATTGTGAAAATTAAAGGCGCAGTTTAAAGAAAATGCTCTCAGAGATTACGGTAGTGAATGGGTTTCGCAGCGATTTCCAAAAAATCTCGGATTTTTTGTCTGGGCACGCTGTTTTCCCGTTTTTCGGCGTTCTTCTCTGCTTTTTGAACCGAATTTGACTCCCAGACATTCCAGTAATGAGTAGATTCGATGTTGAAGCCATTATCGACTTTGCCAAATTTGAACGCTTGATCGAAGACGCTTTGAATTCGAAAGCCAAATTCCTGCCGAAATGCGTTTTGACCTCCAAACAGCGGCATTCGAAATATGCATTTCTGGTAAATCAGTGGTTTTTTCTGTTTTAATATGCGATATGATTTTCAGGTGCACTGGTCGAATTCCACTGTAGCAGAACGAACATGGGAAACGGAAGAGAGTATCGGAAGTTCACAACAGATGTTACTAGATTTCAAGAGAGCGAAGAAACTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGTTTTCTAAAACTGATTAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAACTGCGCCTTTAATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>909</pcr_amplicon_size>
		<canonical_amplicon>CCTTTTTTTTCTCAGACAAGCATAATAATAAAAATTGTGAAAATTAAAGGCGCAGTTT</canonical_amplicon>
		<polymorphic_amplicon>CYTTTTTTTTCTCAGACAAGCATAATAATAAAAATTGTGAAAATTAAAGGCGCAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24039</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>356978</contig_pos>
        <strand></strand>
        <context>taaaatgttt[G/A]ggatattata</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTCTTGGCTCTTATGAAAGATATCGGAGGTGTCAATTGATAAAATGTTT</left_flank>
        <right_flank>GGATATTATAAGAAACCATTTATCAGTTGGCCCGAGATTAATTAGCTCAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGCACATTTGACGATCTCTTCTCCATTAGAAGCTCATAAACAACATACTCTGTGCTATGCTATGGTGGGAATCGACGTTGGGTTTGAGAATCCAACGTTTGCTTGTCTGGAGTTCGACTATGAGGACGCTGACAATGATCCTACTGGAGAGGCTGCGAAACGAACTCAACAAACTCTCACGTTCTACGAATTGGATCTCGGTCTGAATCATGTCGTTCGCAAGTACGCAGAACCCCTCACAGATCCAGGAAACTTGCTTATCGCAGTTCCAGGTGGTAACGAAGGACCGTCCGGTGTCATTGTGTGCTGTGAGAACTATATTGTCTACAAGAATCTTGGTGATCAGCCAGACATCAGATGTCCGATTCCAAGAAGAAGAGTGAGTTATTTGAGTTATCGTAAAACCTCTAATAGAAGGGCCCCTGTAATGCCAAGCTTGAGCCAACTTTTCTTGGCTCTTATGAAAGATATCGGAGGTGTCAATTGATAAAATGTTTGGGATATTATAAGAAACCATTTATCAGTTGGCCCGAGATTAATTAGCTCAAATTTAAAAGTTAGGGGCCCTTCTATTATAGGTTTTACGGTATTGAAAATCTTCATTCAGAACGAGCTCGACGACGCTGATCGCACAATGCTCATCATCGCCACAGCCACTCACAAAACCAAGAATATGTTCTTCTTCTTGATACAAGCAGAAAACGGAGATATTTTCAAAGTGACTCTCGAAACTGACGAAGATTTGGTGACGGAAATGAAACTGAAGTACTTTGATACAGTACCTCCAGCGAACGCTCTGTGTATTTTGAAAGCTGGTTTCTTGTTCGTCGCTGCAGAGTTTGGAAATCAGTTAGTATCAATTCTTATCAAAAAATCAGTCAAAGCTTTATCTTTCCAGTGAGCTCTATCAAATTGCAAGTCTTGGAGAAGGAGGAGACGATGAATTCTCTTCAGCCATGGGTTTCGGAGAGAACGATGCCGCTTTCTTTGAGCCACAT</canonical>
            <polymorphic>GAAGCACATTTGACGATCTCTTCTCCATTAGAAGCTCATAAACAACATACTCTGTGCTATGCTATGGTGGGAATCGACGTTGGGTTTGAGAATCCAACGTTTGCTTGTCTGGAGTTCGACTATGAGGACGCTGACAATGATCCTACTGGAGAGGCTGCGAAACGAACTCAACAAACTCTCACGTTCTACGAATTGGATCTCGGTCTGAATCATGTCGTTCGCAAGTACGCAGAACCCCTCACAGATCCAGGAAACTTGCTTATCGCAGTTCCAGGTGGTAACGAAGGACCGTCCGGTGTCATTGTGTGCTGTGAGAACTATATTGTCTACAAGAATCTTGGTGATCAGCCAGACATCAGATGTCCGATTCCAAGAAGAAGAGTGAGTTATTTGAGTTATCGTAAAACCTCTAATAGAAGGGCCCCTGTAATGCCAAGCTTGAGCCAACTTTTCTTGGCTCTTATGAAAGATATCGGAGGTGTCAATTGATAAAATGTTTRGGATATTATAAGAAACCATTTATCAGTTGGCCCGAGATTAATTAGCTCAAATTTAAAAGTTAGGGGCCCTTCTATTATAGGTTTTACGGTATTGAAAATCTTCATTCAGAACGAGCTCGACGACGCTGATCGCACAATGCTCATCATCGCCACAGCCACTCACAAAACCAAGAATATGTTCTTCTTCTTGATACAAGCAGAAAACGGAGATATTTTCAAAGTGACTCTCGAAACTGACGAAGATTTGGTGACGGAAATGAAACTGAAGTACTTTGATACAGTACCTCCAGCGAACGCTCTGTGTATTTTGAAAGCTGGTTTCTTGTTCGTCGCTGCAGAGTTTGGAAATCAGTTAGTATCAATTCTTATCAAAAAATCAGTCAAAGCTTTATCTTTCCAGTGAGCTCTATCAAATTGCAAGTCTTGGAGAAGGAGGAGACGATGAATTCTCTTCAGCCATGGGTTTCGGAGAGAACGATGCCGCTTTCTTTGAGCCACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGAAGAAGAGTGAGTTATTTGA</pcr_primer_p1>
		<pcr_primer_p2>ATATTCTTGGTTTTGTGAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>CAAGAAGAAGAGTGAGTTATTTGAGTTATCGTAAAACCTCTAATAGAAGGGCCCCTGTAATGCCAAGCTTGAGCCAACTTTTCTTGGCTCTTATGAAAGATATCGGAGGTGTCAATTGATAAAATGTTTGGGATATTATAAGAAACCATTTATCAGTTGGCCCGAGATTAATTAGCTCAAATTTAAAAGTTAGGGGCCCTTCTATTATAGGTTTTACGGTATTGAAAATCTTCATTCAGAACGAGCTCGACGACGCTGATCGCACAATGCTCATCATCGCCACAGCCACTCACAAAACCAAGAATAT</canonical_amplicon>
		<polymorphic_amplicon>CAAGAAGAAGAGTGAGTTATTTGAGTTATCGTAAAACCTCTAATAGAAGGGCCCCTGTAATGCCAAGCTTGAGCCAACTTTTCTTGGCTCTTATGAAAGATATCGGAGGTGTCAATTGATAAAATGTTTRGGATATTATAAGAAACCATTTATCAGTTGGCCCGAGATTAATTAGCTCAAATTTAAAAGTTAGGGGCCCTTCTATTATAGGTTTTACGGTATTGAAAATCTTCATTCAGAACGAGCTCGACGACGCTGATCGCACAATGCTCATCATCGCCACAGCCACTCACAAAACCAAGAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24040</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>357030</contig_pos>
        <strand></strand>
        <context>ttagctcaaa[T/G]ttaaaagtta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GATATTATAAGAAACCATTTATCAGTTGGCCCGAGATTAATTAGCTCAAA</left_flank>
        <right_flank>TTAAAAGTTAGGGGCCCTTCTATTATAGGTTTTACGGTATTGAAAATCTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGCTATGCTATGGTGGGAATCGACGTTGGGTTTGAGAATCCAACGTTTGCTTGTCTGGAGTTCGACTATGAGGACGCTGACAATGATCCTACTGGAGAGGCTGCGAAACGAACTCAACAAACTCTCACGTTCTACGAATTGGATCTCGGTCTGAATCATGTCGTTCGCAAGTACGCAGAACCCCTCACAGATCCAGGAAACTTGCTTATCGCAGTTCCAGGTGGTAACGAAGGACCGTCCGGTGTCATTGTGTGCTGTGAGAACTATATTGTCTACAAGAATCTTGGTGATCAGCCAGACATCAGATGTCCGATTCCAAGAAGAAGAGTGAGTTATTTGAGTTATCGTAAAACCTCTAATAGAAGGGCCCCTGTAATGCCAAGCTTGAGCCAACTTTTCTTGGCTCTTATGAAAGATATCGGAGGTGTCAATTGATAAAATGTTTGGGATATTATAAGAAACCATTTATCAGTTGGCCCGAGATTAATTAGCTCAAATTTAAAAGTTAGGGGCCCTTCTATTATAGGTTTTACGGTATTGAAAATCTTCATTCAGAACGAGCTCGACGACGCTGATCGCACAATGCTCATCATCGCCACAGCCACTCACAAAACCAAGAATATGTTCTTCTTCTTGATACAAGCAGAAAACGGAGATATTTTCAAAGTGACTCTCGAAACTGACGAAGATTTGGTGACGGAAATGAAACTGAAGTACTTTGATACAGTACCTCCAGCGAACGCTCTGTGTATTTTGAAAGCTGGTTTCTTGTTCGTCGCTGCAGAGTTTGGAAATCAGTTAGTATCAATTCTTATCAAAAAATCAGTCAAAGCTTTATCTTTCCAGTGAGCTCTATCAAATTGCAAGTCTTGGAGAAGGAGGAGACGATGAATTCTCTTCAGCCATGGGTTTCGGAGAGAACGATGCCGCTTTCTTTGAGCCACATGAGCTAAGATCTCTGATTCCAATCGATTCCATGGACAGTTTGAGTCCACTCA</canonical>
            <polymorphic>TGTGCTATGCTATGGTGGGAATCGACGTTGGGTTTGAGAATCCAACGTTTGCTTGTCTGGAGTTCGACTATGAGGACGCTGACAATGATCCTACTGGAGAGGCTGCGAAACGAACTCAACAAACTCTCACGTTCTACGAATTGGATCTCGGTCTGAATCATGTCGTTCGCAAGTACGCAGAACCCCTCACAGATCCAGGAAACTTGCTTATCGCAGTTCCAGGTGGTAACGAAGGACCGTCCGGTGTCATTGTGTGCTGTGAGAACTATATTGTCTACAAGAATCTTGGTGATCAGCCAGACATCAGATGTCCGATTCCAAGAAGAAGAGTGAGTTATTTGAGTTATCGTAAAACCTCTAATAGAAGGGCCCCTGTAATGCCAAGCTTGAGCCAACTTTTCTTGGCTCTTATGAAAGATATCGGAGGTGTCAATTGATAAAATGTTTGGGATATTATAAGAAACCATTTATCAGTTGGCCCGAGATTAATTAGCTCAAAKTTAAAAGTTAGGGGCCCTTCTATTATAGGTTTTACGGTATTGAAAATCTTCATTCAGAACGAGCTCGACGACGCTGATCGCACAATGCTCATCATCGCCACAGCCACTCACAAAACCAAGAATATGTTCTTCTTCTTGATACAAGCAGAAAACGGAGATATTTTCAAAGTGACTCTCGAAACTGACGAAGATTTGGTGACGGAAATGAAACTGAAGTACTTTGATACAGTACCTCCAGCGAACGCTCTGTGTATTTTGAAAGCTGGTTTCTTGTTCGTCGCTGCAGAGTTTGGAAATCAGTTAGTATCAATTCTTATCAAAAAATCAGTCAAAGCTTTATCTTTCCAGTGAGCTCTATCAAATTGCAAGTCTTGGAGAAGGAGGAGACGATGAATTCTCTTCAGCCATGGGTTTCGGAGAGAACGATGCCGCTTTCTTTGAGCCACATGAGCTAAGATCTCTGATTCCAATCGATTCCATGGACAGTTTGAGTCCACTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>497 395 108</canonical_bands>
                <polymorphic_bands>892 108</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>311 293 138 108 56 52 32 10</canonical_bands>
                <polymorphic_bands>321 293 138 108 56 52 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGAAGAAGAGTGAGTTATTTGA</pcr_primer_p1>
		<pcr_primer_p2>ATATTCTTGGTTTTGTGAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>CAAGAAGAAGAGTGAGTTATTTGAGTTATCGTAAAACCTCTAATAGAAGGGCCCCTGTAATGCCAAGCTTGAGCCAACTTTTCTTGGCTCTTATGAAAGATATCGGAGGTGTCAATTGATAAAATGTTTGGGATATTATAAGAAACCATTTATCAGTTGGCCCGAGATTAATTAGCTCAAATTTAAAAGTTAGGGGCCCTTCTATTATAGGTTTTACGGTATTGAAAATCTTCATTCAGAACGAGCTCGACGACGCTGATCGCACAATGCTCATCATCGCCACAGCCACTCACAAAACCAAGAATAT</canonical_amplicon>
		<polymorphic_amplicon>CAAGAAGAAGAGTGAGTTATTTGAGTTATCGTAAAACCTCTAATAGAAGGGCCCCTGTAATGCCAAGCTTGAGCCAACTTTTCTTGGCTCTTATGAAAGATATCGGAGGTGTCAATTGATAAAATGTTTGGGATATTATAAGAAACCATTTATCAGTTGGCCCGAGATTAATTAGCTCAAAKTTAAAAGTTAGGGGCCCTTCTATTATAGGTTTTACGGTATTGAAAATCTTCATTCAGAACGAGCTCGACGACGCTGATCGCACAATGCTCATCATCGCCACAGCCACTCACAAAACCAAGAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24041</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>416695</contig_pos>
        <strand></strand>
        <context>tttcagttgg[T/C]tttgaccatk</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGG</left_flank>
        <right_flank>TTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTTCTTTGTAAGCATGTCAGAAAGTCTTCCAGGAGTCGCAACCACAATATGGATTCCTCTGAAAATAAGGTATTTATTCAAAGAGTTGATGTTTCCTTTTCTTACTGTCTAAAATCCTTGGCTTGCTCTCCAATCGGAACTCCTCCAATACACAATCCAGCTCTCAATTCCGGAAATCCTGCTTTCGCTATAGCTTCAGACATTTCAATGATAAGATCGTAGATCTGACGGGCCAATTCTCTCTGAAAAACTTTTTTTTTTGCAATTTTCAGTAAAATAAGACTTACCGAAGGAACAATGATGAGTCCGAAAGGTCCCTCGTTTCTCATAAATGGGAGTTTCACCTCTTGTTCGATACAGAACATGATCAACGGCAAAACAAACGTCATTGTTTTACCGGAACCTGTTGAAGCGATGCCAATCATGTCACGACCACACAGACTGGAATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAAAAACACTATTTTCAGCACTAAAATTCCAAATTTTCAGCCTAAAAATTCAAATTTTCAGCTTATAAAACCCAAATTTTTAGCAAAAATTATTTTTTAACCTCAAAAATAGCTGCTTTCAGCTCAAAACCCCGCTCAAAAGAAGCTTTTTTCCGGTCGAAAAATCTCGATTAAAGGCCACAAATGCCTTATTTTCAGTCTAAAAATCATAATTTTTAGCTCAAAAATTGTCGGTTTTTAGCTAAAAAGTCAAAATTTCCAGCTATTTCCCGATCAAATACTTACGCAACAGGTATTCCT</canonical>
            <polymorphic>ATCTTCTTTGTAAGCATGTCAGAAAGTCTTCCAGGAGTCGCAACCACAATATGGATTCCTCTGAAAATAAGGTATTTATTCAAAGAGTTGATGTTTCCTTTTCTTACTGTCTAAAATCCTTGGCTTGCTCTCCAATCGGAACTCCTCCAATACACAATCCAGCTCTCAATTCCGGAAATCCTGCTTTCGCTATAGCTTCAGACATTTCAATGATAAGATCGTAGATCTGACGGGCCAATTCTCTCTGAAAAACTTTTTTTTTTGCAATTTTCAGTAAAATAAGACTTACCGAAGGAACAATGATGAGTCCGAAAGGTCCCTCGTTTCTCATAAATGGGAGTTTCACCTCTTGTTCGATACAGAACATGATCAACGGCAAAACAAACGTCATTGTTTTACCGGAACCTGTTGAAGCGATGCCAATCATGTCACGACCACACAGACTGGAATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGYTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAAAAACACTATTTTCAGCACTAAAATTCCAAATTTTCAGCCTAAAAATTCAAATTTTCAGCTTATAAAACCCAAATTTTTAGCAAAAATTATTTTTTAACCTCAAAAATAGCTGCTTTCAGCTCAAAACCCCGCTCAAAAGAAGCTTTTTTCCGGTCGAAAAATCTCGATTAAAGGCCACAAATGCCTTATTTTCAGTCTAAAAATCATAATTTTTAGCTCAAAAATTGTCGGTTTTTAGCTAAAAAGTCAAAATTTCCAGCTATTTCCCGATCAAATACTTACGCAACAGGTATTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAATAAGAATTCCGGCTAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAGCTGAAAATTGTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAA</canonical_amplicon>
		<polymorphic_amplicon>AATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGYTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24042</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>416705</contig_pos>
        <strand></strand>
        <context>ytttgaccat[T/G]ttcaggagtc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCAT</left_flank>
        <right_flank>TTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGCATGTCAGAAAGTCTTCCAGGAGTCGCAACCACAATATGGATTCCTCTGAAAATAAGGTATTTATTCAAAGAGTTGATGTTTCCTTTTCTTACTGTCTAAAATCCTTGGCTTGCTCTCCAATCGGAACTCCTCCAATACACAATCCAGCTCTCAATTCCGGAAATCCTGCTTTCGCTATAGCTTCAGACATTTCAATGATAAGATCGTAGATCTGACGGGCCAATTCTCTCTGAAAAACTTTTTTTTTTGCAATTTTCAGTAAAATAAGACTTACCGAAGGAACAATGATGAGTCCGAAAGGTCCCTCGTTTCTCATAAATGGGAGTTTCACCTCTTGTTCGATACAGAACATGATCAACGGCAAAACAAACGTCATTGTTTTACCGGAACCTGTTGAAGCGATGCCAATCATGTCACGACCACACAGACTGGAATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAAAAACACTATTTTCAGCACTAAAATTCCAAATTTTCAGCCTAAAAATTCAAATTTTCAGCTTATAAAACCCAAATTTTTAGCAAAAATTATTTTTTAACCTCAAAAATAGCTGCTTTCAGCTCAAAACCCCGCTCAAAAGAAGCTTTTTTCCGGTCGAAAAATCTCGATTAAAGGCCACAAATGCCTTATTTTCAGTCTAAAAATCATAATTTTTAGCTCAAAAATTGTCGGTTTTTAGCTAAAAAGTCAAAATTTCCAGCTATTTCCCGATCAAATACTTACGCAACAGGTATTCCTTGAATCTGAA</canonical>
            <polymorphic>TAAGCATGTCAGAAAGTCTTCCAGGAGTCGCAACCACAATATGGATTCCTCTGAAAATAAGGTATTTATTCAAAGAGTTGATGTTTCCTTTTCTTACTGTCTAAAATCCTTGGCTTGCTCTCCAATCGGAACTCCTCCAATACACAATCCAGCTCTCAATTCCGGAAATCCTGCTTTCGCTATAGCTTCAGACATTTCAATGATAAGATCGTAGATCTGACGGGCCAATTCTCTCTGAAAAACTTTTTTTTTTGCAATTTTCAGTAAAATAAGACTTACCGAAGGAACAATGATGAGTCCGAAAGGTCCCTCGTTTCTCATAAATGGGAGTTTCACCTCTTGTTCGATACAGAACATGATCAACGGCAAAACAAACGTCATTGTTTTACCGGAACCTGTTGAAGCGATGCCAATCATGTCACGACCACACAGACTGGAATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATKTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAAAAACACTATTTTCAGCACTAAAATTCCAAATTTTCAGCCTAAAAATTCAAATTTTCAGCTTATAAAACCCAAATTTTTAGCAAAAATTATTTTTTAACCTCAAAAATAGCTGCTTTCAGCTCAAAACCCCGCTCAAAAGAAGCTTTTTTCCGGTCGAAAAATCTCGATTAAAGGCCACAAATGCCTTATTTTCAGTCTAAAAATCATAATTTTTAGCTCAAAAATTGTCGGTTTTTAGCTAAAAAGTCAAAATTTCCAGCTATTTCCCGATCAAATACTTACGCAACAGGTATTCCTTGAATCTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAATAAGAATTCCGGCTAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAGCTGAAAATTGTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAA</canonical_amplicon>
		<polymorphic_amplicon>AATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATKTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24043</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>416802</contig_pos>
        <strand></strand>
        <context>GTATATctaa[A/G]aagtggtatc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAA</left_flank>
        <right_flank>AAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTC</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCTAAAATCCTTGGCTTGCTCTCCAATCGGAACTCCTCCAATACACAATCCAGCTCTCAATTCCGGAAATCCTGCTTTCGCTATAGCTTCAGACATTTCAATGATAAGATCGTAGATCTGACGGGCCAATTCTCTCTGAAAAACTTTTTTTTTTGCAATTTTCAGTAAAATAAGACTTACCGAAGGAACAATGATGAGTCCGAAAGGTCCCTCGTTTCTCATAAATGGGAGTTTCACCTCTTGTTCGATACAGAACATGATCAACGGCAAAACAAACGTCATTGTTTTACCGGAACCTGTTGAAGCGATGCCAATCATGTCACGACCACACAGACTGGAATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAAAAACACTATTTTCAGCACTAAAATTCCAAATTTTCAGCCTAAAAATTCAAATTTTCAGCTTATAAAACCCAAATTTTTAGCAAAAATTATTTTTTAACCTCAAAAATAGCTGCTTTCAGCTCAAAACCCCGCTCAAAAGAAGCTTTTTTCCGGTCGAAAAATCTCGATTAAAGGCCACAAATGCCTTATTTTCAGTCTAAAAATCATAATTTTTAGCTCAAAAATTGTCGGTTTTTAGCTAAAAAGTCAAAATTTCCAGCTATTTCCCGATCAAATACTTACGCAACAGGTATTCCTTGAATCTGAATCGCCGTCGGCGTGACGATTCCCTTCTGTTTTTGAAGAAATTGCAGCAATGGTTTCGGGAACTTCATCTCGAGGAAACTTCCAATTGGTGGTGGAAT</canonical>
            <polymorphic>TGTCTAAAATCCTTGGCTTGCTCTCCAATCGGAACTCCTCCAATACACAATCCAGCTCTCAATTCCGGAAATCCTGCTTTCGCTATAGCTTCAGACATTTCAATGATAAGATCGTAGATCTGACGGGCCAATTCTCTCTGAAAAACTTTTTTTTTTGCAATTTTCAGTAAAATAAGACTTACCGAAGGAACAATGATGAGTCCGAAAGGTCCCTCGTTTCTCATAAATGGGAGTTTCACCTCTTGTTCGATACAGAACATGATCAACGGCAAAACAAACGTCATTGTTTTACCGGAACCTGTTGAAGCGATGCCAATCATGTCACGACCACACAGACTGGAATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAARAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAAAAACACTATTTTCAGCACTAAAATTCCAAATTTTCAGCCTAAAAATTCAAATTTTCAGCTTATAAAACCCAAATTTTTAGCAAAAATTATTTTTTAACCTCAAAAATAGCTGCTTTCAGCTCAAAACCCCGCTCAAAAGAAGCTTTTTTCCGGTCGAAAAATCTCGATTAAAGGCCACAAATGCCTTATTTTCAGTCTAAAAATCATAATTTTTAGCTCAAAAATTGTCGGTTTTTAGCTAAAAAGTCAAAATTTCCAGCTATTTCCCGATCAAATACTTACGCAACAGGTATTCCTTGAATCTGAATCGCCGTCGGCGTGACGATTCCCTTCTGTTTTTGAAGAAATTGCAGCAATGGTTTCGGGAACTTCATCTCGAGGAAACTTCCAATTGGTGGTGGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAATAAGAATTCCGGCTAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAGCTGAAAATTGTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAA</canonical_amplicon>
		<polymorphic_amplicon>AATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAARAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24044</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>416822</contig_pos>
        <strand></strand>
        <context>cctccagaaa[T/C]cagcaagtag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAA</left_flank>
        <right_flank>CAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTCCAATCGGAACTCCTCCAATACACAATCCAGCTCTCAATTCCGGAAATCCTGCTTTCGCTATAGCTTCAGACATTTCAATGATAAGATCGTAGATCTGACGGGCCAATTCTCTCTGAAAAACTTTTTTTTTTGCAATTTTCAGTAAAATAAGACTTACCGAAGGAACAATGATGAGTCCGAAAGGTCCCTCGTTTCTCATAAATGGGAGTTTCACCTCTTGTTCGATACAGAACATGATCAACGGCAAAACAAACGTCATTGTTTTACCGGAACCTGTTGAAGCGATGCCAATCATGTCACGACCACACAGACTGGAATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAAAAACACTATTTTCAGCACTAAAATTCCAAATTTTCAGCCTAAAAATTCAAATTTTCAGCTTATAAAACCCAAATTTTTAGCAAAAATTATTTTTTAACCTCAAAAATAGCTGCTTTCAGCTCAAAACCCCGCTCAAAAGAAGCTTTTTTCCGGTCGAAAAATCTCGATTAAAGGCCACAAATGCCTTATTTTCAGTCTAAAAATCATAATTTTTAGCTCAAAAATTGTCGGTTTTTAGCTAAAAAGTCAAAATTTCCAGCTATTTCCCGATCAAATACTTACGCAACAGGTATTCCTTGAATCTGAATCGCCGTCGGCGTGACGATTCCCTTCTGTTTTTGAAGAAATTGCAGCAATGGTTTCGGGAACTTCATCTCGAGGAAACTTCCAATTGGTGGTGGAATTGTTTCTCCTTCACAACTGA</canonical>
            <polymorphic>CTCTCCAATCGGAACTCCTCCAATACACAATCCAGCTCTCAATTCCGGAAATCCTGCTTTCGCTATAGCTTCAGACATTTCAATGATAAGATCGTAGATCTGACGGGCCAATTCTCTCTGAAAAACTTTTTTTTTTGCAATTTTCAGTAAAATAAGACTTACCGAAGGAACAATGATGAGTCCGAAAGGTCCCTCGTTTCTCATAAATGGGAGTTTCACCTCTTGTTCGATACAGAACATGATCAACGGCAAAACAAACGTCATTGTTTTACCGGAACCTGTTGAAGCGATGCCAATCATGTCACGACCACACAGACTGGAATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAAYCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAAAAACACTATTTTCAGCACTAAAATTCCAAATTTTCAGCCTAAAAATTCAAATTTTCAGCTTATAAAACCCAAATTTTTAGCAAAAATTATTTTTTAACCTCAAAAATAGCTGCTTTCAGCTCAAAACCCCGCTCAAAAGAAGCTTTTTTCCGGTCGAAAAATCTCGATTAAAGGCCACAAATGCCTTATTTTCAGTCTAAAAATCATAATTTTTAGCTCAAAAATTGTCGGTTTTTAGCTAAAAAGTCAAAATTTCCAGCTATTTCCCGATCAAATACTTACGCAACAGGTATTCCTTGAATCTGAATCGCCGTCGGCGTGACGATTCCCTTCTGTTTTTGAAGAAATTGCAGCAATGGTTTCGGGAACTTCATCTCGAGGAAACTTCCAATTGGTGGTGGAATTGTTTCTCCTTCACAACTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAATAAGAATTCCGGCTAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAGCTGAAAATTGTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAA</canonical_amplicon>
		<polymorphic_amplicon>AATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAAYCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24045</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>416872</contig_pos>
        <strand>+</strand>
        <context>tttcgaatgc[A/T]aagtAAAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGC</left_flank>
        <right_flank>AAGTAAAAGACAATTTTCAGCTCAAAAAACACTATTTTCAGCACTAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCTGCTTTCGCTATAGCTTCAGACATTTCAATGATAAGATCGTAGATCTGACGGGCCAATTCTCTCTGAAAAACTTTTTTTTTTGCAATTTTCAGTAAAATAAGACTTACCGAAGGAACAATGATGAGTCCGAAAGGTCCCTCGTTTCTCATAAATGGGAGTTTCACCTCTTGTTCGATACAGAACATGATCAACGGCAAAACAAACGTCATTGTTTTACCGGAACCTGTTGAAGCGATGCCAATCATGTCACGACCACACAGACTGGAATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAAAAACACTATTTTCAGCACTAAAATTCCAAATTTTCAGCCTAAAAATTCAAATTTTCAGCTTATAAAACCCAAATTTTTAGCAAAAATTATTTTTTAACCTCAAAAATAGCTGCTTTCAGCTCAAAACCCCGCTCAAAAGAAGCTTTTTTCCGGTCGAAAAATCTCGATTAAAGGCCACAAATGCCTTATTTTCAGTCTAAAAATCATAATTTTTAGCTCAAAAATTGTCGGTTTTTAGCTAAAAAGTCAAAATTTCCAGCTATTTCCCGATCAAATACTTACGCAACAGGTATTCCTTGAATCTGAATCGCCGTCGGCGTGACGATTCCCTTCTGTTTTTGAAGAAATTGCAGCAATGGTTTCGGGAACTTCATCTCGAGGAAACTTCCAATTGGTGGTGGAATTGTTTCTCCTTCACAACTGATTCCCAACCGTTTTCTCTGATTTTCGTAATCTGTTTGAGTCTGACGGCGG</canonical>
            <polymorphic>ATCCTGCTTTCGCTATAGCTTCAGACATTTCAATGATAAGATCGTAGATCTGACGGGCCAATTCTCTCTGAAAAACTTTTTTTTTTGCAATTTTCAGTAAAATAAGACTTACCGAAGGAACAATGATGAGTCCGAAAGGTCCCTCGTTTCTCATAAATGGGAGTTTCACCTCTTGTTCGATACAGAACATGATCAACGGCAAAACAAACGTCATTGTTTTACCGGAACCTGTTGAAGCGATGCCAATCATGTCACGACCACACAGACTGGAATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCWAAGTAAAAGACAATTTTCAGCTCAAAAAACACTATTTTCAGCACTAAAATTCCAAATTTTCAGCCTAAAAATTCAAATTTTCAGCTTATAAAACCCAAATTTTTAGCAAAAATTATTTTTTAACCTCAAAAATAGCTGCTTTCAGCTCAAAACCCCGCTCAAAAGAAGCTTTTTTCCGGTCGAAAAATCTCGATTAAAGGCCACAAATGCCTTATTTTCAGTCTAAAAATCATAATTTTTAGCTCAAAAATTGTCGGTTTTTAGCTAAAAAGTCAAAATTTCCAGCTATTTCCCGATCAAATACTTACGCAACAGGTATTCCTTGAATCTGAATCGCCGTCGGCGTGACGATTCCCTTCTGTTTTTGAAGAAATTGCAGCAATGGTTTCGGGAACTTCATCTCGAGGAAACTTCCAATTGGTGGTGGAATTGTTTCTCCTTCACAACTGATTCCCAACCGTTTTCTCTGATTTTCGTAATCTGTTTGAGTCTGACGGCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>411 378 124 87</canonical_bands>
                <polymorphic_bands>789 124 87</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGAATAAGAATTCCGGCTAT</pcr_primer_p1>
		<pcr_primer_p2>TTGCTAAAAATTTGGGTTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>339</pcr_amplicon_size>
		<canonical_amplicon>AATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAAAAACACTATTTTCAGCACTAAAATTCCAAATTTTCAGCCTAAAAATTCAAATTTTCAGCTTATAAAACCCAAATTTTTAGCAA</canonical_amplicon>
		<polymorphic_amplicon>AATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCWAAGTAAAAGACAATTTTCAGCTCAAAAAACACTATTTTCAGCACTAAAATTCCAAATTTTCAGCCTAAAAATTCAAATTTTCAGCTTATAAAACCCAAATTTTTAGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24046</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>416937</contig_pos>
        <strand>+</strand>
        <context>AATTTTCAGC[C/T]TAAAAATTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCAGCTCAAAAAACACTATTTTCAGCACTAAAATTCCAAATTTTCAGC</left_flank>
        <right_flank>TAAAAATTCAAATTTTCAGCTTATAAAACCCAAATTTTTAGCAAAAATTA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTGAAAAACTTTTTTTTTTGCAATTTTCAGTAAAATAAGACTTACCGAAGGAACAATGATGAGTCCGAAAGGTCCCTCGTTTCTCATAAATGGGAGTTTCACCTCTTGTTCGATACAGAACATGATCAACGGCAAAACAAACGTCATTGTTTTACCGGAACCTGTTGAAGCGATGCCAATCATGTCACGACCACACAGACTGGAATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAAAAACACTATTTTCAGCACTAAAATTCCAAATTTTCAGCCTAAAAATTCAAATTTTCAGCTTATAAAACCCAAATTTTTAGCAAAAATTATTTTTTAACCTCAAAAATAGCTGCTTTCAGCTCAAAACCCCGCTCAAAAGAAGCTTTTTTCCGGTCGAAAAATCTCGATTAAAGGCCACAAATGCCTTATTTTCAGTCTAAAAATCATAATTTTTAGCTCAAAAATTGTCGGTTTTTAGCTAAAAAGTCAAAATTTCCAGCTATTTCCCGATCAAATACTTACGCAACAGGTATTCCTTGAATCTGAATCGCCGTCGGCGTGACGATTCCCTTCTGTTTTTGAAGAAATTGCAGCAATGGTTTCGGGAACTTCATCTCGAGGAAACTTCCAATTGGTGGTGGAATTGTTTCTCCTTCACAACTGATTCCCAACCGTTTTCTCTGATTTTCGTAATCTGTTTGAGTCTGACGGCGGATGTGGCCTGGTGGACGCCATCTGAAAAATATTTATGAATTTTTCTTACTTGATTTGAAACATAC</canonical>
            <polymorphic>CTCTGAAAAACTTTTTTTTTTGCAATTTTCAGTAAAATAAGACTTACCGAAGGAACAATGATGAGTCCGAAAGGTCCCTCGTTTCTCATAAATGGGAGTTTCACCTCTTGTTCGATACAGAACATGATCAACGGCAAAACAAACGTCATTGTTTTACCGGAACCTGTTGAAGCGATGCCAATCATGTCACGACCACACAGACTGGAATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAAAAACACTATTTTCAGCACTAAAATTCCAAATTTTCAGCYTAAAAATTCAAATTTTCAGCTTATAAAACCCAAATTTTTAGCAAAAATTATTTTTTAACCTCAAAAATAGCTGCTTTCAGCTCAAAACCCCGCTCAAAAGAAGCTTTTTTCCGGTCGAAAAATCTCGATTAAAGGCCACAAATGCCTTATTTTCAGTCTAAAAATCATAATTTTTAGCTCAAAAATTGTCGGTTTTTAGCTAAAAAGTCAAAATTTCCAGCTATTTCCCGATCAAATACTTACGCAACAGGTATTCCTTGAATCTGAATCGCCGTCGGCGTGACGATTCCCTTCTGTTTTTGAAGAAATTGCAGCAATGGTTTCGGGAACTTCATCTCGAGGAAACTTCCAATTGGTGGTGGAATTGTTTCTCCTTCACAACTGATTCCCAACCGTTTTCTCTGATTTTCGTAATCTGTTTGAGTCTGACGGCGGATGTGGCCTGGTGGACGCCATCTGAAAAATATTTATGAATTTTTCTTACTTGATTTGAAACATAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>223 221 172 60 59 51 43 42 32 23 22 21 21 10</canonical_bands>
                <polymorphic_bands>223 221 172 64 60 59 51 42 32 23 22 21 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGAATAAGAATTCCGGCTAT</pcr_primer_p1>
		<pcr_primer_p2>AAAGCAGCTATTTTTGAGGTTA</pcr_primer_p2>
		<pcr_amplicon_size>372</pcr_amplicon_size>
		<canonical_amplicon>AATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAAAAACACTATTTTCAGCACTAAAATTCCAAATTTTCAGCCTAAAAATTCAAATTTTCAGCTTATAAAACCCAAATTTTTAGCAAAAATTATTTTTTAACCTCAAAAATAGCTGCTTT</canonical_amplicon>
		<polymorphic_amplicon>AATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAAAAACACTATTTTCAGCACTAAAATTCCAAATTTTCAGCYTAAAAATTCAAATTTTCAGCTTATAAAACCCAAATTTTTAGCAAAAATTATTTTTTAACCTCAAAAATAGCTGCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24047</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>416985</contig_pos>
        <strand>+</strand>
        <context>TTAGCAAAAA[A/T]TATTTTTTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCCTAAAAATTCAAATTTTCAGCTTATAAAACCCAAATTTTTAGCAAAAA</left_flank>
        <right_flank>TATTTTTTAACCTCAAAAATAGCTGCTTTCAGCTCAAAACCCCGCTCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGGAACAATGATGAGTCCGAAAGGTCCCTCGTTTCTCATAAATGGGAGTTTCACCTCTTGTTCGATACAGAACATGATCAACGGCAAAACAAACGTCATTGTTTTACCGGAACCTGTTGAAGCGATGCCAATCATGTCACGACCACACAGACTGGAATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAAAAACACTATTTTCAGCACTAAAATTCCAAATTTTCAGCCTAAAAATTCAAATTTTCAGCTTATAAAACCCAAATTTTTAGCAAAAATTATTTTTTAACCTCAAAAATAGCTGCTTTCAGCTCAAAACCCCGCTCAAAAGAAGCTTTTTTCCGGTCGAAAAATCTCGATTAAAGGCCACAAATGCCTTATTTTCAGTCTAAAAATCATAATTTTTAGCTCAAAAATTGTCGGTTTTTAGCTAAAAAGTCAAAATTTCCAGCTATTTCCCGATCAAATACTTACGCAACAGGTATTCCTTGAATCTGAATCGCCGTCGGCGTGACGATTCCCTTCTGTTTTTGAAGAAATTGCAGCAATGGTTTCGGGAACTTCATCTCGAGGAAACTTCCAATTGGTGGTGGAATTGTTTCTCCTTCACAACTGATTCCCAACCGTTTTCTCTGATTTTCGTAATCTGTTTGAGTCTGACGGCGGATGTGGCCTGGTGGACGCCATCTGAAAAATATTTATGAATTTTTCTTACTTGATTTGAAACATACGCAGTGGTAATTGGTTCCTCATATTTTTCCCCTTTAACGAGTTCTGTA</canonical>
            <polymorphic>GAAGGAACAATGATGAGTCCGAAAGGTCCCTCGTTTCTCATAAATGGGAGTTTCACCTCTTGTTCGATACAGAACATGATCAACGGCAAAACAAACGTCATTGTTTTACCGGAACCTGTTGAAGCGATGCCAATCATGTCACGACCACACAGACTGGAATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAAAAACACTATTTTCAGCACTAAAATTCCAAATTTTCAGCCTAAAAATTCAAATTTTCAGCTTATAAAACCCAAATTTTTAGCAAAAAWTATTTTTTAACCTCAAAAATAGCTGCTTTCAGCTCAAAACCCCGCTCAAAAGAAGCTTTTTTCCGGTCGAAAAATCTCGATTAAAGGCCACAAATGCCTTATTTTCAGTCTAAAAATCATAATTTTTAGCTCAAAAATTGTCGGTTTTTAGCTAAAAAGTCAAAATTTCCAGCTATTTCCCGATCAAATACTTACGCAACAGGTATTCCTTGAATCTGAATCGCCGTCGGCGTGACGATTCCCTTCTGTTTTTGAAGAAATTGCAGCAATGGTTTCGGGAACTTCATCTCGAGGAAACTTCCAATTGGTGGTGGAATTGTTTCTCCTTCACAACTGATTCCCAACCGTTTTCTCTGATTTTCGTAATCTGTTTGAGTCTGACGGCGGATGTGGCCTGGTGGACGCCATCTGAAAAATATTTATGAATTTTTCTTACTTGATTTGAAACATACGCAGTGGTAATTGGTTCCTCATATTTTTCCCCTTTAACGAGTTCTGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>167 123 110 105 95 79 44 40 36 36 28 24 22 15 15 14 13 12 9 7 6</canonical_bands>
                <polymorphic_bands>167 136 110 105 95 79 44 40 36 36 28 24 22 15 15 14 12 9 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGAATAAGAATTCCGGCTAT</pcr_primer_p1>
		<pcr_primer_p2>GGCCTTTAATCGAGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>432</pcr_amplicon_size>
		<canonical_amplicon>AATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAAAAACACTATTTTCAGCACTAAAATTCCAAATTTTCAGCCTAAAAATTCAAATTTTCAGCTTATAAAACCCAAATTTTTAGCAAAAATTATTTTTTAACCTCAAAAATAGCTGCTTTCAGCTCAAAACCCCGCTCAAAAGAAGCTTTTTTCCGGTCGAAAAATCTCGATTAAAGGCC</canonical_amplicon>
		<polymorphic_amplicon>AATGAATAAGAATTCCGGCTATAAATATATGAAAAAACGCGTTTTCAGTTGGTTTTGACCATTTTCAGGAGTCCAGACTCTAGATCTTGATTGTCAAGTGTCCCATCACTTTGAAAATTTCGGAAATTATAGAACATGTTAGAACAGAGGTATATCTAAAAAGTGGTATCCTCCAGAAATCAGCAAGTAGCTGAAAAACTAGGAATTTTCAAAATATAATTTCGAATGCAAAGTAAAAGACAATTTTCAGCTCAAAAAACACTATTTTCAGCACTAAAATTCCAAATTTTCAGCCTAAAAATTCAAATTTTCAGCTTATAAAACCCAAATTTTTAGCAAAAAWTATTTTTTAACCTCAAAAATAGCTGCTTTCAGCTCAAAACCCCGCTCAAAAGAAGCTTTTTTCCGGTCGAAAAATCTCGATTAAAGGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24048</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>419913</contig_pos>
        <strand>+</strand>
        <context>CAATTTTAGT[A/T]GATGTAAGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATTGTTCCAATTTTAGT</left_flank>
        <right_flank>GATGTAAGTCGGCAAAATCAATGTGATGAGACTTCTTGAAAAGTGTCCAA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCGTGGGGGCAACAATAACTAATCAGTGATCGTGAAAGGCGCTGCAAGTGCGGAGTCCGTATGGAAGAGAGTTCAAAATATTATTCGAAACGATCAGGCTAGATATCGCCAAATGAAACCCAAAACAGTGTTGGTTCTTGTTTAGGCACCAGGATCTTTTAACATTTTACTTTGCTACAGAATCAAATAATCACAGGAACAGAAACGTCAATTTTATTTATGTTATTCAGGTTTTTGATAAATTCGGTTGAAAAAATTGTATATTGTATACTGTATATTTTGTATACAAAATTTATAAAAACTGTTTATTTTCACTGTATAATTTTACACCGGATACATTAGCTTTTATGAACGGTGAACAATAGTTCCAAAATTTACATTATTTCTTATCAGGTCATCAAATAAAATCGGACAAAAAATTTGGAACGCTTCACGAATTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATTGTTCCAATTTTAGTTGATGTAAGTCGGCAAAATCAATGTGATGAGACTTCTTGAAAAGTGTCCAATTGTCAGGTATTCTGAAAATTCCTTTCGATTTTTCTGATTTTTCTGTTGTCTGCTCATTACCTATACCCGTTTTTAAAATATGTATATCGAGTTTGTTTTTACGTGATCCTTTAACTTTCTTCACTTCACTGATGCTAGTCTGGTTTTCCGTAACCTCCGTGAAGTTTTACCAATATGAGAGCAAATTTGAAGATCTGGAAAAATGGAAATAAATTAGTACTCAGTTTACAACGTTCAAGTTTAGGAACTTCCTGGCTTCGAGCGAAAACTACTCCAATGTCTTCCGACGACTCCACTCTAAGGACCCCGAGGACTTTTCGATTTCAAATGGTAAGGAATATGGATTGAAAGGTGAGGAAGTTTTGATTTTAAAGTTTTCGAAGTTAGACTTTTTTTGATGAAATTTGCTAACTGCGATGTCTTAACAAAAGGTTGAACGAGTTACGATG</canonical>
            <polymorphic>CCCGTGGGGGCAACAATAACTAATCAGTGATCGTGAAAGGCGCTGCAAGTGCGGAGTCCGTATGGAAGAGAGTTCAAAATATTATTCGAAACGATCAGGCTAGATATCGCCAAATGAAACCCAAAACAGTGTTGGTTCTTGTTTAGGCACCAGGATCTTTTAACATTTTACTTTGCTACAGAATCAAATAATCACAGGAACAGAAACGTCAATTTTATTTATGTTATTCAGGTTTTTGATAAATTCGGTTGAAAAAATTGTATATTGTATACTGTATATTTTGTATACAAAATTTATAAAAACTGTTTATTTTCACTGTATAATTTTACACCGGATACATTAGCTTTTATGAACGGTGAACAATAGTTCCAAAATTTACATTATTTCTTATCAGGTCATCAAATAAAATCGGACAAAAAATTTGGAACGCTTCACGAATTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATTGTTCCAATTTTAGTWGATGTAAGTCGGCAAAATCAATGTGATGAGACTTCTTGAAAAGTGTCCAATTGTCAGGTATTCTGAAAATTCCTTTCGATTTTTCTGATTTTTCTGTTGTCTGCTCATTACCTATACCCGTTTTTAAAATATGTATATCGAGTTTGTTTTTACGTGATCCTTTAACTTTCTTCACTTCACTGATGCTAGTCTGGTTTTCCGTAACCTCCGTGAAGTTTTACCAATATGAGAGCAAATTTGAAGATCTGGAAAAATGGAAATAAATTAGTACTCAGTTTACAACGTTCAAGTTTAGGAACTTCCTGGCTTCGAGCGAAAACTACTCCAATGTCTTCCGACGACTCCACTCTAAGGACCCCGAGGACTTTTCGATTTCAAATGGTAAGGAATATGGATTGAAAGGTGAGGAAGTTTTGATTTTAAAGTTTTCGAAGTTAGACTTTTTTTGATGAAATTTGCTAACTGCGATGTCTTAACAAAAGGTTGAACGAGTTACGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAACAATAGTTCCAAAATTTACA</pcr_primer_p1>
		<pcr_primer_p2>AGACAACAGAAAAATCAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TGAACAATAGTTCCAAAATTTACATTATTTCTTATCAGGTCATCAAATAAAATCGGACAAAAAATTTGGAACGCTTCACGAATTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATTGTTCCAATTTTAGTTGATGTAAGTCGGCAAAATCAATGTGATGAGACTTCTTGAAAAGTGTCCAATTGTCAGGTATTCTGAAAATTCCTTTCGATTTTTCTGATTTTTCTGTTGTCT</canonical_amplicon>
		<polymorphic_amplicon>TGAACAATAGTTCCAAAATTTACATTATTTCTTATCAGGTCATCAAATAAAATCGGACAAAAAATTTGGAACGCTTCACGAATTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATTGTTCCAATTTTAGTWGATGTAAGTCGGCAAAATCAATGTGATGAGACTTCTTGAAAAGTGTCCAATTGTCAGGTATTCTGAAAATTCCTTTCGATTTTTCTGATTTTTCTGTTGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24049</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>448996</contig_pos>
        <strand></strand>
        <context>tttcctgtta[T/A]tgatacagaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CCCCCCCTCCTAACTTTCAGTTTTGAGCAAATTTATCTCGTTTCCTGTTA</left_flank>
        <right_flank>TGATACAGAAAAGTTTCCAATTGATAAATTGTTTATCCTATAAGAAGGAG</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAAATAAGGGAGGATAAATAGATATATACATATAGATAGATAGATGGGAGCTAAATAAAATTGTAAAATGAACGATTTTTACGGCCATGGCCAATATGGTTTTGTCAGCATCACTTGCTTATTTCGCTGAGTTTTTGTGTGATCCTCATCTGAAGTTAGACTTCGGCGACGGTGTTTGTGGCGAATGTGGTGCTGAAAAAATGTTTATAAAATAATGAGATTTCGAGATTAAAAACATTTTTAAGTTGACTTGGTTTTTTAGAATTAATAGCAAGACGTTGATAGCTGCCGATCTTTTACTATCAATATAGTTTCAGAATTTCAGAATCCTAGAATCTAATAATCTCCCAATCAAATCAATGTAATCAAACGTTGAATTTATGAAACCCAGTTCAAAAATACTGATCCTTTTCCCATAGATACCGTAAAACTTGTAATAGAAGCCCCCCCCCCCTCCTAACTTTCAGTTTTGAGCAAATTTATCTCGTTTCCTGTTATTGATACAGAAAAGTTTCCAATTGATAAATTGTTTATCCTATAAGAAGGAGCGATTTTCAAAATTTTCAATTTTCATCCCAGATCACTTCGATTTCCAAAATTTCTGTGAAGTTTCAGTAAAATCACGTGAATTTCCAAAATCCCAGAACTCGAACCGTTCGAGTTCTGTGAAAAATCCCAGAAATTGCAACGTTCAATTTCTGTGAATCACGTAAAATTTCCAAATTCCCAGAAATTTTGGAAATCGAAGTGATTTGGGATGAAAATTGAAAATTTTGAAAATCGCTCCTTCTTATATTATCGAAAATGTATTGTCAGTTGACACATTTTGGTTATCTTTTGCAGGAATCGAGATAATTGAGCTCAAACTTGACAATGTGGAGGCTCTTCTATTACATGATTTACAGTAGCCACTTTTTGATATTTTCTTTCGAAAAGATTTATAGGATCAAAGTTGAGGGTTTGGATATTATTATATTATTGTTGACAGAAACTACGAA</canonical>
            <polymorphic>AATAAATAAGGGAGGATAAATAGATATATACATATAGATAGATAGATGGGAGCTAAATAAAATTGTAAAATGAACGATTTTTACGGCCATGGCCAATATGGTTTTGTCAGCATCACTTGCTTATTTCGCTGAGTTTTTGTGTGATCCTCATCTGAAGTTAGACTTCGGCGACGGTGTTTGTGGCGAATGTGGTGCTGAAAAAATGTTTATAAAATAATGAGATTTCGAGATTAAAAACATTTTTAAGTTGACTTGGTTTTTTAGAATTAATAGCAAGACGTTGATAGCTGCCGATCTTTTACTATCAATATAGTTTCAGAATTTCAGAATCCTAGAATCTAATAATCTCCCAATCAAATCAATGTAATCAAACGTTGAATTTATGAAACCCAGTTCAAAAATACTGATCCTTTTCCCATAGATACCGTAAAACTTGTAATAGAAGCCCCCCCCCCCTCCTAACTTTCAGTTTTGAGCAAATTTATCTCGTTTCCTGTTAWTGATACAGAAAAGTTTCCAATTGATAAATTGTTTATCCTATAAGAAGGAGCGATTTTCAAAATTTTCAATTTTCATCCCAGATCACTTCGATTTCCAAAATTTCTGTGAAGTTTCAGTAAAATCACGTGAATTTCCAAAATCCCAGAACTCGAACCGTTCGAGTTCTGTGAAAAATCCCAGAAATTGCAACGTTCAATTTCTGTGAATCACGTAAAATTTCCAAATTCCCAGAAATTTTGGAAATCGAAGTGATTTGGGATGAAAATTGAAAATTTTGAAAATCGCTCCTTCTTATATTATCGAAAATGTATTGTCAGTTGACACATTTTGGTTATCTTTTGCAGGAATCGAGATAATTGAGCTCAAACTTGACAATGTGGAGGCTCTTCTATTACATGATTTACAGTAGCCACTTTTTGATATTTTCTTTCGAAAAGATTTATAGGATCAAAGTTGAGGGTTTGGATATTATTATATTATTGTTGACAGAAACTACGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACTGATCCTTTTCCCATAGAT</pcr_primer_p1>
		<pcr_primer_p2>TCGAAAGAAAATATCAAAAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>534</pcr_amplicon_size>
		<canonical_amplicon>ATACTGATCCTTTTCCCATAGATACCGTAAAACTTGTAATAGAAGCCCCCCCCCCCTCCTAACTTTCAGTTTTGAGCAAATTTATCTCGTTTCCTGTTATTGATACAGAAAAGTTTCCAATTGATAAATTGTTTATCCTATAAGAAGGAGCGATTTTCAAAATTTTCAATTTTCATCCCAGATCACTTCGATTTCCAAAATTTCTGTGAAGTTTCAGTAAAATCACGTGAATTTCCAAAATCCCAGAACTCGAACCGTTCGAGTTCTGTGAAAAATCCCAGAAATTGCAACGTTCAATTTCTGTGAATCACGTAAAATTTCCAAATTCCCAGAAATTTTGGAAATCGAAGTGATTTGGGATGAAAATTGAAAATTTTGAAAATCGCTCCTTCTTATATTATCGAAAATGTATTGTCAGTTGACACATTTTGGTTATCTTTTGCAGGAATCGAGATAATTGAGCTCAAACTTGACAATGTGGAGGCTCTTCTATTACATGATTTACAGTAGCCACTTTTTGATATTTTCTTTCGA</canonical_amplicon>
		<polymorphic_amplicon>ATACTGATCCTTTTCCCATAGATACCGTAAAACTTGTAATAGAAGCCCCCCCCCCCTCCTAACTTTCAGTTTTGAGCAAATTTATCTCGTTTCCTGTTAWTGATACAGAAAAGTTTCCAATTGATAAATTGTTTATCCTATAAGAAGGAGCGATTTTCAAAATTTTCAATTTTCATCCCAGATCACTTCGATTTCCAAAATTTCTGTGAAGTTTCAGTAAAATCACGTGAATTTCCAAAATCCCAGAACTCGAACCGTTCGAGTTCTGTGAAAAATCCCAGAAATTGCAACGTTCAATTTCTGTGAATCACGTAAAATTTCCAAATTCCCAGAAATTTTGGAAATCGAAGTGATTTGGGATGAAAATTGAAAATTTTGAAAATCGCTCCTTCTTATATTATCGAAAATGTATTGTCAGTTGACACATTTTGGTTATCTTTTGCAGGAATCGAGATAATTGAGCTCAAACTTGACAATGTGGAGGCTCTTCTATTACATGATTTACAGTAGCCACTTTTTGATATTTTCTTTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24050</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>450592</contig_pos>
        <strand></strand>
        <context>aaattcaaga[A/C]attcatcagt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGAGTGAAGCGTTGTACTAGACTCAAATTTGGTGTGAGAAAATTCAAGA</left_flank>
        <right_flank>ATTCATCAGTAAACTGGCAAAATTTCGAATTATATTATTAACTTTGAGCT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGCATGCAAATTGGGTTTCTCGATTTCGAAACCATCTTCAACTGTCATCACAGCTGCTGAAGAGATTGGATAGGCGTCAAGTGTGGAGACGAGAAGAATCAGGATGAGGATGCAACTGAAAAAATAGAAAAATTAGGGACGAGAAGACAGAATGAGAGAAAGTAGAAGAGGATCTGTATCCTTTTGCTTTTTACCTATCCGTTCAGAAATCGGGAGATTAGGATAGAGAAAACCTAGACATCGGGAGAGAAAGTTTACAAGAAGAAGGTGAAGATAACGGAGAAAGGATGTGTCTGTTTAATTCAAGGACAATTGTCTGGGATTACTTTTTTTGGGAATAGTACCTGATCTTTAAAGTCTTCCAAACATCACAGAAAACCTAAAACCACAGGCTCTAAGCTACAGGGCGCTTATATCCCCGGACTAAAGTTTGTACAAGCATACAATTTGAGTGAAGCGTTGTACTAGACTCAAATTTGGTGTGAGAAAATTCAAGAAATTCATCAGTAAACTGGCAAAATTTCGAATTATATTATTAACTTTGAGCTGAGCTATCACTTGTCGAAGTTGCTCCATTTTTTTATACAACGGAGGTCAAGGAACATTCATCTTTAGACGATTATAACAATACCTAGACTCAAGGAAAAACTTTGAAAATTCCAGTAGAGCTGGATCAAACGTAAAACTATATTTTTACAGATTTTCGTGCTTCCAAAATACTCGTGTCTAAAGATATACCCGTCTTTATCAGTCTATGTAATTGTGCGCCTCTCGGTTTGGATAATTGGTTTTCAATTATGATTAAACAAAAATCCGAAGACACAAAAAATAACCATCTTATGATTTGACCAAACCCTTGAAACTTTCAAGTTGAAACGGAAAAAAATTATTCAAAAACTCACCAGCAGTCATCCTTGAAACCCTGCATTCTGAATCGGAGTAGTTGTCGACTTTTCGGAATGAATGTTCTCTTTCCTTTTCGAAAAATGTTGCGTCGT</canonical>
            <polymorphic>TGAGCATGCAAATTGGGTTTCTCGATTTCGAAACCATCTTCAACTGTCATCACAGCTGCTGAAGAGATTGGATAGGCGTCAAGTGTGGAGACGAGAAGAATCAGGATGAGGATGCAACTGAAAAAATAGAAAAATTAGGGACGAGAAGACAGAATGAGAGAAAGTAGAAGAGGATCTGTATCCTTTTGCTTTTTACCTATCCGTTCAGAAATCGGGAGATTAGGATAGAGAAAACCTAGACATCGGGAGAGAAAGTTTACAAGAAGAAGGTGAAGATAACGGAGAAAGGATGTGTCTGTTTAATTCAAGGACAATTGTCTGGGATTACTTTTTTTGGGAATAGTACCTGATCTTTAAAGTCTTCCAAACATCACAGAAAACCTAAAACCACAGGCTCTAAGCTACAGGGCGCTTATATCCCCGGACTAAAGTTTGTACAAGCATACAATTTGAGTGAAGCGTTGTACTAGACTCAAATTTGGTGTGAGAAAATTCAAGAMATTCATCAGTAAACTGGCAAAATTTCGAATTATATTATTAACTTTGAGCTGAGCTATCACTTGTCGAAGTTGCTCCATTTTTTTATACAACGGAGGTCAAGGAACATTCATCTTTAGACGATTATAACAATACCTAGACTCAAGGAAAAACTTTGAAAATTCCAGTAGAGCTGGATCAAACGTAAAACTATATTTTTACAGATTTTCGTGCTTCCAAAATACTCGTGTCTAAAGATATACCCGTCTTTATCAGTCTATGTAATTGTGCGCCTCTCGGTTTGGATAATTGGTTTTCAATTATGATTAAACAAAAATCCGAAGACACAAAAAATAACCATCTTATGATTTGACCAAACCCTTGAAACTTTCAAGTTGAAACGGAAAAAAATTATTCAAAAACTCACCAGCAGTCATCCTTGAAACCCTGCATTCTGAATCGGAGTAGTTGTCGACTTTTCGGAATGAATGTTCTCTTTCCTTTTCGAAAAATGTTGCGTCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>475 343 137 21 15 9</canonical_bands>
                <polymorphic_bands>475 343 137 30 15</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>169 134 130 122 114 103 91 29 24 21 15 11 11 10 9 7</canonical_bands>
                <polymorphic_bands>169 134 130 122 114 103 91 30 29 24 15 11 11 10 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACCACAGGCTCTAAGCTAC</pcr_primer_p1>
		<pcr_primer_p2>TGTCTTCGGATTTTTGTTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>440</pcr_amplicon_size>
		<canonical_amplicon>AAACCACAGGCTCTAAGCTACAGGGCGCTTATATCCCCGGACTAAAGTTTGTACAAGCATACAATTTGAGTGAAGCGTTGTACTAGACTCAAATTTGGTGTGAGAAAATTCAAGAAATTCATCAGTAAACTGGCAAAATTTCGAATTATATTATTAACTTTGAGCTGAGCTATCACTTGTCGAAGTTGCTCCATTTTTTTATACAACGGAGGTCAAGGAACATTCATCTTTAGACGATTATAACAATACCTAGACTCAAGGAAAAACTTTGAAAATTCCAGTAGAGCTGGATCAAACGTAAAACTATATTTTTACAGATTTTCGTGCTTCCAAAATACTCGTGTCTAAAGATATACCCGTCTTTATCAGTCTATGTAATTGTGCGCCTCTCGGTTTGGATAATTGGTTTTCAATTATGATTAAACAAAAATCCGAAGACA</canonical_amplicon>
		<polymorphic_amplicon>AAACCACAGGCTCTAAGCTACAGGGCGCTTATATCCCCGGACTAAAGTTTGTACAAGCATACAATTTGAGTGAAGCGTTGTACTAGACTCAAATTTGGTGTGAGAAAATTCAAGAMATTCATCAGTAAACTGGCAAAATTTCGAATTATATTATTAACTTTGAGCTGAGCTATCACTTGTCGAAGTTGCTCCATTTTTTTATACAACGGAGGTCAAGGAACATTCATCTTTAGACGATTATAACAATACCTAGACTCAAGGAAAAACTTTGAAAATTCCAGTAGAGCTGGATCAAACGTAAAACTATATTTTTACAGATTTTCGTGCTTCCAAAATACTCGTGTCTAAAGATATACCCGTCTTTATCAGTCTATGTAATTGTGCGCCTCTCGGTTTGGATAATTGGTTTTCAATTATGATTAAACAAAAATCCGAAGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24051</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>450631</contig_pos>
        <strand></strand>
        <context>attatattat[T/C]aactttgagc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAATTCAAGAAATTCATCAGTAAACTGGCAAAATTTCGAATTATATTAT</left_flank>
        <right_flank>AACTTTGAGCTGAGCTATCACTTGTCGAAGTTGCTCCATTTTTTTATACA</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAACTGTCATCACAGCTGCTGAAGAGATTGGATAGGCGTCAAGTGTGGAGACGAGAAGAATCAGGATGAGGATGCAACTGAAAAAATAGAAAAATTAGGGACGAGAAGACAGAATGAGAGAAAGTAGAAGAGGATCTGTATCCTTTTGCTTTTTACCTATCCGTTCAGAAATCGGGAGATTAGGATAGAGAAAACCTAGACATCGGGAGAGAAAGTTTACAAGAAGAAGGTGAAGATAACGGAGAAAGGATGTGTCTGTTTAATTCAAGGACAATTGTCTGGGATTACTTTTTTTGGGAATAGTACCTGATCTTTAAAGTCTTCCAAACATCACAGAAAACCTAAAACCACAGGCTCTAAGCTACAGGGCGCTTATATCCCCGGACTAAAGTTTGTACAAGCATACAATTTGAGTGAAGCGTTGTACTAGACTCAAATTTGGTGTGAGAAAATTCAAGAAATTCATCAGTAAACTGGCAAAATTTCGAATTATATTATTAACTTTGAGCTGAGCTATCACTTGTCGAAGTTGCTCCATTTTTTTATACAACGGAGGTCAAGGAACATTCATCTTTAGACGATTATAACAATACCTAGACTCAAGGAAAAACTTTGAAAATTCCAGTAGAGCTGGATCAAACGTAAAACTATATTTTTACAGATTTTCGTGCTTCCAAAATACTCGTGTCTAAAGATATACCCGTCTTTATCAGTCTATGTAATTGTGCGCCTCTCGGTTTGGATAATTGGTTTTCAATTATGATTAAACAAAAATCCGAAGACACAAAAAATAACCATCTTATGATTTGACCAAACCCTTGAAACTTTCAAGTTGAAACGGAAAAAAATTATTCAAAAACTCACCAGCAGTCATCCTTGAAACCCTGCATTCTGAATCGGAGTAGTTGTCGACTTTTCGGAATGAATGTTCTCTTTCCTTTTCGAAAAATGTTGCGTCGTCTGAGAAGAGGTGGAGGATAAAAAAGGTCAGATAGTGAA</canonical>
            <polymorphic>TCAACTGTCATCACAGCTGCTGAAGAGATTGGATAGGCGTCAAGTGTGGAGACGAGAAGAATCAGGATGAGGATGCAACTGAAAAAATAGAAAAATTAGGGACGAGAAGACAGAATGAGAGAAAGTAGAAGAGGATCTGTATCCTTTTGCTTTTTACCTATCCGTTCAGAAATCGGGAGATTAGGATAGAGAAAACCTAGACATCGGGAGAGAAAGTTTACAAGAAGAAGGTGAAGATAACGGAGAAAGGATGTGTCTGTTTAATTCAAGGACAATTGTCTGGGATTACTTTTTTTGGGAATAGTACCTGATCTTTAAAGTCTTCCAAACATCACAGAAAACCTAAAACCACAGGCTCTAAGCTACAGGGCGCTTATATCCCCGGACTAAAGTTTGTACAAGCATACAATTTGAGTGAAGCGTTGTACTAGACTCAAATTTGGTGTGAGAAAATTCAAGAAATTCATCAGTAAACTGGCAAAATTTCGAATTATATTATYAACTTTGAGCTGAGCTATCACTTGTCGAAGTTGCTCCATTTTTTTATACAACGGAGGTCAAGGAACATTCATCTTTAGACGATTATAACAATACCTAGACTCAAGGAAAAACTTTGAAAATTCCAGTAGAGCTGGATCAAACGTAAAACTATATTTTTACAGATTTTCGTGCTTCCAAAATACTCGTGTCTAAAGATATACCCGTCTTTATCAGTCTATGTAATTGTGCGCCTCTCGGTTTGGATAATTGGTTTTCAATTATGATTAAACAAAAATCCGAAGACACAAAAAATAACCATCTTATGATTTGACCAAACCCTTGAAACTTTCAAGTTGAAACGGAAAAAAATTATTCAAAAACTCACCAGCAGTCATCCTTGAAACCCTGCATTCTGAATCGGAGTAGTTGTCGACTTTTCGGAATGAATGTTCTCTTTCCTTTTCGAAAAATGTTGCGTCGTCTGAGAAGAGGTGGAGGATAAAAAAGGTCAGATAGTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>266 261 235 184 54</canonical_bands>
                <polymorphic_bands>450 261 235 54</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACCACAGGCTCTAAGCTAC</pcr_primer_p1>
		<pcr_primer_p2>TGTCTTCGGATTTTTGTTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>440</pcr_amplicon_size>
		<canonical_amplicon>AAACCACAGGCTCTAAGCTACAGGGCGCTTATATCCCCGGACTAAAGTTTGTACAAGCATACAATTTGAGTGAAGCGTTGTACTAGACTCAAATTTGGTGTGAGAAAATTCAAGAAATTCATCAGTAAACTGGCAAAATTTCGAATTATATTATTAACTTTGAGCTGAGCTATCACTTGTCGAAGTTGCTCCATTTTTTTATACAACGGAGGTCAAGGAACATTCATCTTTAGACGATTATAACAATACCTAGACTCAAGGAAAAACTTTGAAAATTCCAGTAGAGCTGGATCAAACGTAAAACTATATTTTTACAGATTTTCGTGCTTCCAAAATACTCGTGTCTAAAGATATACCCGTCTTTATCAGTCTATGTAATTGTGCGCCTCTCGGTTTGGATAATTGGTTTTCAATTATGATTAAACAAAAATCCGAAGACA</canonical_amplicon>
		<polymorphic_amplicon>AAACCACAGGCTCTAAGCTACAGGGCGCTTATATCCCCGGACTAAAGTTTGTACAAGCATACAATTTGAGTGAAGCGTTGTACTAGACTCAAATTTGGTGTGAGAAAATTCAAGAAATTCATCAGTAAACTGGCAAAATTTCGAATTATATTATYAACTTTGAGCTGAGCTATCACTTGTCGAAGTTGCTCCATTTTTTTATACAACGGAGGTCAAGGAACATTCATCTTTAGACGATTATAACAATACCTAGACTCAAGGAAAAACTTTGAAAATTCCAGTAGAGCTGGATCAAACGTAAAACTATATTTTTACAGATTTTCGTGCTTCCAAAATACTCGTGTCTAAAGATATACCCGTCTTTATCAGTCTATGTAATTGTGCGCCTCTCGGTTTGGATAATTGGTTTTCAATTATGATTAAACAAAAATCCGAAGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24052</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>450849</contig_pos>
        <strand></strand>
        <context>ttatcagtct[A/G]kgtaattgtg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTGCTTCCAAAATACTCGTGTCTAAAGATATACCCGTCTTTATCAGTCT</left_flank>
        <right_flank>TGTAATTGTGCGCCTCTCGGTTTGGATAATTGGTTTTCAATTATGATTAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACAAGAAGAAGGTGAAGATAACGGAGAAAGGATGTGTCTGTTTAATTCAAGGACAATTGTCTGGGATTACTTTTTTTGGGAATAGTACCTGATCTTTAAAGTCTTCCAAACATCACAGAAAACCTAAAACCACAGGCTCTAAGCTACAGGGCGCTTATATCCCCGGACTAAAGTTTGTACAAGCATACAATTTGAGTGAAGCGTTGTACTAGACTCAAATTTGGTGTGAGAAAATTCAAGAAATTCATCAGTAAACTGGCAAAATTTCGAATTATATTATTAACTTTGAGCTGAGCTATCACTTGTCGAAGTTGCTCCATTTTTTTATACAACGGAGGTCAAGGAACATTCATCTTTAGACGATTATAACAATACCTAGACTCAAGGAAAAACTTTGAAAATTCCAGTAGAGCTGGATCAAACGTAAAACTATATTTTTACAGATTTTCGTGCTTCCAAAATACTCGTGTCTAAAGATATACCCGTCTTTATCAGTCTATGTAATTGTGCGCCTCTCGGTTTGGATAATTGGTTTTCAATTATGATTAAACAAAAATCCGAAGACACAAAAAATAACCATCTTATGATTTGACCAAACCCTTGAAACTTTCAAGTTGAAACGGAAAAAAATTATTCAAAAACTCACCAGCAGTCATCCTTGAAACCCTGCATTCTGAATCGGAGTAGTTGTCGACTTTTCGGAATGAATGTTCTCTTTCCTTTTCGAAAAATGTTGCGTCGTCTGAGAAGAGGTGGAGGATAAAAAAGGTCAGATAGTGAATTTGACCTGAAAAAAAATGAAAATGTTCATCTCTCTTTATCCATTTCATCTGGGTCAGTGAGAAGAGACAGGATTACGGTAGAGGGACAAAAATGCCACGTCATCATCAAAGAGTAAAGATAAAGTCCCATAAATTATAATGTGATGATCGAAGGGAAAGGGGGAGAGAAAGTGAAACCGAGTAGATTGAAAGGAAAAGGGGAAAGCGTGCGAAATGT</canonical>
            <polymorphic>TACAAGAAGAAGGTGAAGATAACGGAGAAAGGATGTGTCTGTTTAATTCAAGGACAATTGTCTGGGATTACTTTTTTTGGGAATAGTACCTGATCTTTAAAGTCTTCCAAACATCACAGAAAACCTAAAACCACAGGCTCTAAGCTACAGGGCGCTTATATCCCCGGACTAAAGTTTGTACAAGCATACAATTTGAGTGAAGCGTTGTACTAGACTCAAATTTGGTGTGAGAAAATTCAAGAAATTCATCAGTAAACTGGCAAAATTTCGAATTATATTATTAACTTTGAGCTGAGCTATCACTTGTCGAAGTTGCTCCATTTTTTTATACAACGGAGGTCAAGGAACATTCATCTTTAGACGATTATAACAATACCTAGACTCAAGGAAAAACTTTGAAAATTCCAGTAGAGCTGGATCAAACGTAAAACTATATTTTTACAGATTTTCGTGCTTCCAAAATACTCGTGTCTAAAGATATACCCGTCTTTATCAGTCTRTGTAATTGTGCGCCTCTCGGTTTGGATAATTGGTTTTCAATTATGATTAAACAAAAATCCGAAGACACAAAAAATAACCATCTTATGATTTGACCAAACCCTTGAAACTTTCAAGTTGAAACGGAAAAAAATTATTCAAAAACTCACCAGCAGTCATCCTTGAAACCCTGCATTCTGAATCGGAGTAGTTGTCGACTTTTCGGAATGAATGTTCTCTTTCCTTTTCGAAAAATGTTGCGTCGTCTGAGAAGAGGTGGAGGATAAAAAAGGTCAGATAGTGAATTTGACCTGAAAAAAAATGAAAATGTTCATCTCTCTTTATCCATTTCATCTGGGTCAGTGAGAAGAGACAGGATTACGGTAGAGGGACAAAAATGCCACGTCATCATCAAAGAGTAAAGATAAAGTCCCATAAATTATAATGTGATGATCGAAGGGAAAGGGGGAGAGAAAGTGAAACCGAGTAGATTGAAAGGAAAAGGGGAAAGCGTGCGAAATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACCACAGGCTCTAAGCTAC</pcr_primer_p1>
		<pcr_primer_p2>TGTCTTCGGATTTTTGTTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>440</pcr_amplicon_size>
		<canonical_amplicon>AAACCACAGGCTCTAAGCTACAGGGCGCTTATATCCCCGGACTAAAGTTTGTACAAGCATACAATTTGAGTGAAGCGTTGTACTAGACTCAAATTTGGTGTGAGAAAATTCAAGAAATTCATCAGTAAACTGGCAAAATTTCGAATTATATTATTAACTTTGAGCTGAGCTATCACTTGTCGAAGTTGCTCCATTTTTTTATACAACGGAGGTCAAGGAACATTCATCTTTAGACGATTATAACAATACCTAGACTCAAGGAAAAACTTTGAAAATTCCAGTAGAGCTGGATCAAACGTAAAACTATATTTTTACAGATTTTCGTGCTTCCAAAATACTCGTGTCTAAAGATATACCCGTCTTTATCAGTCTATGTAATTGTGCGCCTCTCGGTTTGGATAATTGGTTTTCAATTATGATTAAACAAAAATCCGAAGACA</canonical_amplicon>
		<polymorphic_amplicon>AAACCACAGGCTCTAAGCTACAGGGCGCTTATATCCCCGGACTAAAGTTTGTACAAGCATACAATTTGAGTGAAGCGTTGTACTAGACTCAAATTTGGTGTGAGAAAATTCAAGAAATTCATCAGTAAACTGGCAAAATTTCGAATTATATTATTAACTTTGAGCTGAGCTATCACTTGTCGAAGTTGCTCCATTTTTTTATACAACGGAGGTCAAGGAACATTCATCTTTAGACGATTATAACAATACCTAGACTCAAGGAAAAACTTTGAAAATTCCAGTAGAGCTGGATCAAACGTAAAACTATATTTTTACAGATTTTCGTGCTTCCAAAATACTCGTGTCTAAAGATATACCCGTCTTTATCAGTCTRTGTAATTGTGCGCCTCTCGGTTTGGATAATTGGTTTTCAATTATGATTAAACAAAAATCCGAAGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24053</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>450850</contig_pos>
        <strand></strand>
        <context>tatcagtctr[T/G]gtaattgtgc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GTGCTTCCAAAATACTCGTGTCTAAAGATATACCCGTCTTTATCAGTCTA</left_flank>
        <right_flank>GTAATTGTGCGCCTCTCGGTTTGGATAATTGGTTTTCAATTATGATTAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAGAAGAAGGTGAAGATAACGGAGAAAGGATGTGTCTGTTTAATTCAAGGACAATTGTCTGGGATTACTTTTTTTGGGAATAGTACCTGATCTTTAAAGTCTTCCAAACATCACAGAAAACCTAAAACCACAGGCTCTAAGCTACAGGGCGCTTATATCCCCGGACTAAAGTTTGTACAAGCATACAATTTGAGTGAAGCGTTGTACTAGACTCAAATTTGGTGTGAGAAAATTCAAGAAATTCATCAGTAAACTGGCAAAATTTCGAATTATATTATTAACTTTGAGCTGAGCTATCACTTGTCGAAGTTGCTCCATTTTTTTATACAACGGAGGTCAAGGAACATTCATCTTTAGACGATTATAACAATACCTAGACTCAAGGAAAAACTTTGAAAATTCCAGTAGAGCTGGATCAAACGTAAAACTATATTTTTACAGATTTTCGTGCTTCCAAAATACTCGTGTCTAAAGATATACCCGTCTTTATCAGTCTATGTAATTGTGCGCCTCTCGGTTTGGATAATTGGTTTTCAATTATGATTAAACAAAAATCCGAAGACACAAAAAATAACCATCTTATGATTTGACCAAACCCTTGAAACTTTCAAGTTGAAACGGAAAAAAATTATTCAAAAACTCACCAGCAGTCATCCTTGAAACCCTGCATTCTGAATCGGAGTAGTTGTCGACTTTTCGGAATGAATGTTCTCTTTCCTTTTCGAAAAATGTTGCGTCGTCTGAGAAGAGGTGGAGGATAAAAAAGGTCAGATAGTGAATTTGACCTGAAAAAAAATGAAAATGTTCATCTCTCTTTATCCATTTCATCTGGGTCAGTGAGAAGAGACAGGATTACGGTAGAGGGACAAAAATGCCACGTCATCATCAAAGAGTAAAGATAAAGTCCCATAAATTATAATGTGATGATCGAAGGGAAAGGGGGAGAGAAAGTGAAACCGAGTAGATTGAAAGGAAAAGGGGAAAGCGTGCGAAATGTG</canonical>
            <polymorphic>ACAAGAAGAAGGTGAAGATAACGGAGAAAGGATGTGTCTGTTTAATTCAAGGACAATTGTCTGGGATTACTTTTTTTGGGAATAGTACCTGATCTTTAAAGTCTTCCAAACATCACAGAAAACCTAAAACCACAGGCTCTAAGCTACAGGGCGCTTATATCCCCGGACTAAAGTTTGTACAAGCATACAATTTGAGTGAAGCGTTGTACTAGACTCAAATTTGGTGTGAGAAAATTCAAGAAATTCATCAGTAAACTGGCAAAATTTCGAATTATATTATTAACTTTGAGCTGAGCTATCACTTGTCGAAGTTGCTCCATTTTTTTATACAACGGAGGTCAAGGAACATTCATCTTTAGACGATTATAACAATACCTAGACTCAAGGAAAAACTTTGAAAATTCCAGTAGAGCTGGATCAAACGTAAAACTATATTTTTACAGATTTTCGTGCTTCCAAAATACTCGTGTCTAAAGATATACCCGTCTTTATCAGTCTAKGTAATTGTGCGCCTCTCGGTTTGGATAATTGGTTTTCAATTATGATTAAACAAAAATCCGAAGACACAAAAAATAACCATCTTATGATTTGACCAAACCCTTGAAACTTTCAAGTTGAAACGGAAAAAAATTATTCAAAAACTCACCAGCAGTCATCCTTGAAACCCTGCATTCTGAATCGGAGTAGTTGTCGACTTTTCGGAATGAATGTTCTCTTTCCTTTTCGAAAAATGTTGCGTCGTCTGAGAAGAGGTGGAGGATAAAAAAGGTCAGATAGTGAATTTGACCTGAAAAAAAATGAAAATGTTCATCTCTCTTTATCCATTTCATCTGGGTCAGTGAGAAGAGACAGGATTACGGTAGAGGGACAAAAATGCCACGTCATCATCAAAGAGTAAAGATAAAGTCCCATAAATTATAATGTGATGATCGAAGGGAAAGGGGGAGAGAAAGTGAAACCGAGTAGATTGAAAGGAAAAGGGGAAAGCGTGCGAAATGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACCACAGGCTCTAAGCTAC</pcr_primer_p1>
		<pcr_primer_p2>TGTCTTCGGATTTTTGTTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>440</pcr_amplicon_size>
		<canonical_amplicon>AAACCACAGGCTCTAAGCTACAGGGCGCTTATATCCCCGGACTAAAGTTTGTACAAGCATACAATTTGAGTGAAGCGTTGTACTAGACTCAAATTTGGTGTGAGAAAATTCAAGAAATTCATCAGTAAACTGGCAAAATTTCGAATTATATTATTAACTTTGAGCTGAGCTATCACTTGTCGAAGTTGCTCCATTTTTTTATACAACGGAGGTCAAGGAACATTCATCTTTAGACGATTATAACAATACCTAGACTCAAGGAAAAACTTTGAAAATTCCAGTAGAGCTGGATCAAACGTAAAACTATATTTTTACAGATTTTCGTGCTTCCAAAATACTCGTGTCTAAAGATATACCCGTCTTTATCAGTCTATGTAATTGTGCGCCTCTCGGTTTGGATAATTGGTTTTCAATTATGATTAAACAAAAATCCGAAGACA</canonical_amplicon>
		<polymorphic_amplicon>AAACCACAGGCTCTAAGCTACAGGGCGCTTATATCCCCGGACTAAAGTTTGTACAAGCATACAATTTGAGTGAAGCGTTGTACTAGACTCAAATTTGGTGTGAGAAAATTCAAGAAATTCATCAGTAAACTGGCAAAATTTCGAATTATATTATTAACTTTGAGCTGAGCTATCACTTGTCGAAGTTGCTCCATTTTTTTATACAACGGAGGTCAAGGAACATTCATCTTTAGACGATTATAACAATACCTAGACTCAAGGAAAAACTTTGAAAATTCCAGTAGAGCTGGATCAAACGTAAAACTATATTTTTACAGATTTTCGTGCTTCCAAAATACTCGTGTCTAAAGATATACCCGTCTTTATCAGTCTAKGTAATTGTGCGCCTCTCGGTTTGGATAATTGGTTTTCAATTATGATTAAACAAAAATCCGAAGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24054</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>479723</contig_pos>
        <strand></strand>
        <context>TTCATGAATT[T/A]TCAGCTTCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTATGGTACACCGGTTATCTCTCTTTCGCGTCTTTAATATTCATGAATT</left_flank>
        <right_flank>TCAGCTTCTCGTTTCATGCCTTATAATATACTCGGCGTACTTTACCTATC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCCACTTCCGCTGTCTGCTGCTTTGCCTCCACCACCCCCTCCTCCACCACGACCGGATTCACTAGATCAATTTTTGGCCAACCAGGTAAGTACCTACACTTGCATTTTCATAAAATTCTCGAACATTTAAGGTGCAACGTCATAGGAAGCGTCAAAGAACGCCTACTCGAACATTGTCGCCCAACTCTCAATTGAAGCGTCAACGACGTCATTAAGAAGAACTCTTCTCCTACTATTTCATTTTTGTAATTCTCACCGCTTTCTATCTTCACCACCACCGCTTCATAATCGTTTTCTACTCTCATTTTTTCTAGCTTTTTGTACCTCTTATTCTCTCTAGTGAAACTGAAAACTTTGCCTTAAAAACCGGTCTTCAAAACTGAAAACGACTGCTGCAAAAACTTGAATATTTTCTTCGTTTCAGAGAGCACCCTCTTATTTACTCAGATTTATGGTACACCGGTTATCTCTCTTTCGCGTCTTTAATATTCATGAATTTTCAGCTTCTCGTTTCATGCCTTATAATATACTCGGCGTACTTTACCTATCGAAAGTAATACAACAATTTGTAGCGAGTCAGGGTTAACATCTCTTTTATCGTAGCCTCCTCTTCTCTATCGTTTTTGTACATAAAAACGCCATCATTTTTTCCTCGGATCTTATCTTTATAAGTCTCTATTATTATTATTATTATGTTGGCTACTTCTTTAGTCCTACTCCTAATCAATGAAATACGACTTCTGTAAATATTATCCAATTTTTTGAAATCTTTTCTTCTATCGGGTTTGTAGCCTGTTTTTGTACTTTTTATTAGCTCGCAATTTGGAATCAAAATCGCAGTTACACATTTCAGAAGTCAGAATGGTGCGAAAACTGAAAACCCATGAGCAGAAGCTCCTCAAGAAAACCGACTTCATGTCGTGGCAAGTGGATCAGCAAGGGAGACAAGGAGATATGCTCAGAAAGTATGTTAATTTATTATATTTAGTCCTTGCTGAT</canonical>
            <polymorphic>CCCCACTTCCGCTGTCTGCTGCTTTGCCTCCACCACCCCCTCCTCCACCACGACCGGATTCACTAGATCAATTTTTGGCCAACCAGGTAAGTACCTACACTTGCATTTTCATAAAATTCTCGAACATTTAAGGTGCAACGTCATAGGAAGCGTCAAAGAACGCCTACTCGAACATTGTCGCCCAACTCTCAATTGAAGCGTCAACGACGTCATTAAGAAGAACTCTTCTCCTACTATTTCATTTTTGTAATTCTCACCGCTTTCTATCTTCACCACCACCGCTTCATAATCGTTTTCTACTCTCATTTTTTCTAGCTTTTTGTACCTCTTATTCTCTCTAGTGAAACTGAAAACTTTGCCTTAAAAACCGGTCTTCAAAACTGAAAACGACTGCTGCAAAAACTTGAATATTTTCTTCGTTTCAGAGAGCACCCTCTTATTTACTCAGATTTATGGTACACCGGTTATCTCTCTTTCGCGTCTTTAATATTCATGAATTWTCAGCTTCTCGTTTCATGCCTTATAATATACTCGGCGTACTTTACCTATCGAAAGTAATACAACAATTTGTAGCGAGTCAGGGTTAACATCTCTTTTATCGTAGCCTCCTCTTCTCTATCGTTTTTGTACATAAAAACGCCATCATTTTTTCCTCGGATCTTATCTTTATAAGTCTCTATTATTATTATTATTATGTTGGCTACTTCTTTAGTCCTACTCCTAATCAATGAAATACGACTTCTGTAAATATTATCCAATTTTTTGAAATCTTTTCTTCTATCGGGTTTGTAGCCTGTTTTTGTACTTTTTATTAGCTCGCAATTTGGAATCAAAATCGCAGTTACACATTTCAGAAGTCAGAATGGTGCGAAAACTGAAAACCCATGAGCAGAAGCTCCTCAAGAAAACCGACTTCATGTCGTGGCAAGTGGATCAGCAAGGGAGACAAGGAGATATGCTCAGAAAGTATGTTAATTTATTATATTTAGTCCTTGCTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>505 381 114</canonical_bands>
                <polymorphic_bands>886 114</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAGAGCACCCTCTTATTTACT</pcr_primer_p1>
		<pcr_primer_p2>ATAAAGATAAGATCCGAGGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGAGAGCACCCTCTTATTTACTCAGATTTATGGTACACCGGTTATCTCTCTTTCGCGTCTTTAATATTCATGAATTTTCAGCTTCTCGTTTCATGCCTTATAATATACTCGGCGTACTTTACCTATCGAAAGTAATACAACAATTTGTAGCGAGTCAGGGTTAACATCTCTTTTATCGTAGCCTCCTCTTCTCTATCGTTTTTGTACATAAAAACGCCATCATTTTTTCCTCGGATCTTATCTTTAT</canonical_amplicon>
		<polymorphic_amplicon>CAGAGAGCACCCTCTTATTTACTCAGATTTATGGTACACCGGTTATCTCTCTTTCGCGTCTTTAATATTCATGAATTWTCAGCTTCTCGTTTCATGCCTTATAATATACTCGGCGTACTTTACCTATCGAAAGTAATACAACAATTTGTAGCGAGTCAGGGTTAACATCTCTTTTATCGTAGCCTCCTCTTCTCTATCGTTTTTGTACATAAAAACGCCATCATTTTTTCCTCGGATCTTATCTTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24055</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>495222</contig_pos>
        <strand>+</strand>
        <context>TGAACACAAA[A/T]TGAAAattcc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAATAAATTCGAATATTTATTCATTAATTATGAACTTAATGAACACAAA</left_flank>
        <right_flank>TGAAAATTCCGTTTTTAAAAATTTCGGAATTTCGGAAGATTCCGATTTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATTCCTCGGTGCCTGGGGACTTTTGGAGCATCTCACGGAGTTCCATCGCATGCTGCTCTATAACGAGGAGAAACTGACAGTATGCTTGAACTCTAAATTTTTCTCACTAGAATCTTTCTCGTTTCAGGCAAGCGATCTCGCACAAATGCTCTCTAACTCCGGCTCAGCGCCACCGTCTTCCTCTCCATCGGTTGTTCCACTGGCTGCCCCTCAAAATCAGTCACAGAATGTGTCTGCTAACTCAACACCTTCGTATCCAGTGGTCGTAGAGGGCACACCAGTTTCGTATTCATCGAACAACGAAACTCCCCAAACTCTCAACTGATTACACTTTGAAATCTCAAGCGAATCTCTTTTATTTATATTTTTACTGAATCATGAACTTTCTTTTCTGATTTTCGTGTTGTGAACTACTCGAGGTTTTTATCGAGATCTTGAGACAAGAATTGAATAAATTCGAATATTTATTCATTAATTATGAACTTAATGAACACAAAATGAAAATTCCGTTTTTAAAAATTTCGGAATTTCGGAAGATTCCGATTTTGAAAATTTCGAAATCTCGGAATTTTCCGATTTTCAAAAATTCAAGTGTTAAAGTAGAAATTCCATTTTTCCATTACAAAACACCAGAAATCAGGAAAAAATTCTGAAAAGTCAGTAAAAACGCAAAAAATTGGAAGTAATTCTGCCCGCAATCTGTTTTTTCGCGACATACCGTAGTCAAAAAATTTCTAAATCCGAAAAAAAATTCGGAAAACTTCCGGTTGGAATTTCATTCCGAAAATAGTCGGAAATTTCGAAAATTTTGAATTCCGTTCCGAACATCCCTGATTTTCGGCCAGAAGGCTCATCGGCGCCAAGAAAAATGAAAGTGAACTTCAAGAATCTTTTTTTTTCAAAAAAAAATATGTCAAATACATACACTTTCTGAATTTTCATAATGATTCAAAACGTTTTTTCTTGAAAACCTGTATTTTTTATCCTACAAATTCGTA</canonical>
            <polymorphic>CGATTCCTCGGTGCCTGGGGACTTTTGGAGCATCTCACGGAGTTCCATCGCATGCTGCTCTATAACGAGGAGAAACTGACAGTATGCTTGAACTCTAAATTTTTCTCACTAGAATCTTTCTCGTTTCAGGCAAGCGATCTCGCACAAATGCTCTCTAACTCCGGCTCAGCGCCACCGTCTTCCTCTCCATCGGTTGTTCCACTGGCTGCCCCTCAAAATCAGTCACAGAATGTGTCTGCTAACTCAACACCTTCGTATCCAGTGGTCGTAGAGGGCACACCAGTTTCGTATTCATCGAACAACGAAACTCCCCAAACTCTCAACTGATTACACTTTGAAATCTCAAGCGAATCTCTTTTATTTATATTTTTACTGAATCATGAACTTTCTTTTCTGATTTTCGTGTTGTGAACTACTCGAGGTTTTTATCGAGATCTTGAGACAAGAATTGAATAAATTCGAATATTTATTCATTAATTATGAACTTAATGAACACAAAWTGAAAATTCCGTTTTTAAAAATTTCGGAATTTCGGAAGATTCCGATTTTGAAAATTTCGAAATCTCGGAATTTTCCGATTTTCAAAAATTCAAGTGTTAAAGTAGAAATTCCATTTTTCCATTACAAAACACCAGAAATCAGGAAAAAATTCTGAAAAGTCAGTAAAAACGCAAAAAATTGGAAGTAATTCTGCCCGCAATCTGTTTTTTCGCGACATACCGTAGTCAAAAAATTTCTAAATCCGAAAAAAAATTCGGAAAACTTCCGGTTGGAATTTCATTCCGAAAATAGTCGGAAATTTCGAAAATTTTGAATTCCGTTCCGAACATCCCTGATTTTCGGCCAGAAGGCTCATCGGCGCCAAGAAAAATGAAAGTGAACTTCAAGAATCTTTTTTTTTCAAAAAAAAATATGTCAAATACATACACTTTCTGAATTTTCATAATGATTCAAAACGTTTTTTCTTGAAAACCTGTATTTTTTATCCTACAAATTCGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCTTGAGACAAGAATTGAATAA</pcr_primer_p1>
		<pcr_primer_p2>TGAAGTTCACTTTCATTTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>454</pcr_amplicon_size>
		<canonical_amplicon>GATCTTGAGACAAGAATTGAATAAATTCGAATATTTATTCATTAATTATGAACTTAATGAACACAAAATGAAAATTCCGTTTTTAAAAATTTCGGAATTTCGGAAGATTCCGATTTTGAAAATTTCGAAATCTCGGAATTTTCCGATTTTCAAAAATTCAAGTGTTAAAGTAGAAATTCCATTTTTCCATTACAAAACACCAGAAATCAGGAAAAAATTCTGAAAAGTCAGTAAAAACGCAAAAAATTGGAAGTAATTCTGCCCGCAATCTGTTTTTTCGCGACATACCGTAGTCAAAAAATTTCTAAATCCGAAAAAAAATTCGGAAAACTTCCGGTTGGAATTTCATTCCGAAAATAGTCGGAAATTTCGAAAATTTTGAATTCCGTTCCGAACATCCCTGATTTTCGGCCAGAAGGCTCATCGGCGCCAAGAAAAATGAAAGTGAACTTCA</canonical_amplicon>
		<polymorphic_amplicon>GATCTTGAGACAAGAATTGAATAAATTCGAATATTTATTCATTAATTATGAACTTAATGAACACAAAWTGAAAATTCCGTTTTTAAAAATTTCGGAATTTCGGAAGATTCCGATTTTGAAAATTTCGAAATCTCGGAATTTTCCGATTTTCAAAAATTCAAGTGTTAAAGTAGAAATTCCATTTTTCCATTACAAAACACCAGAAATCAGGAAAAAATTCTGAAAAGTCAGTAAAAACGCAAAAAATTGGAAGTAATTCTGCCCGCAATCTGTTTTTTCGCGACATACCGTAGTCAAAAAATTTCTAAATCCGAAAAAAAATTCGGAAAACTTCCGGTTGGAATTTCATTCCGAAAATAGTCGGAAATTTCGAAAATTTTGAATTCCGTTCCGAACATCCCTGATTTTCGGCCAGAAGGCTCATCGGCGCCAAGAAAAATGAAAGTGAACTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24056</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>495281</contig_pos>
        <strand></strand>
        <context>tgaaaatttc[G/C]aaatctcgga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CCGTTTTTAAAAATTTCGGAATTTCGGAAGATTCCGATTTTGAAAATTTC</left_flank>
        <right_flank>AAATCTCGGAATTTTCCGATTTTCAAAAATTCAAGTGTTAAAGTAGAAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATAACGAGGAGAAACTGACAGTATGCTTGAACTCTAAATTTTTCTCACTAGAATCTTTCTCGTTTCAGGCAAGCGATCTCGCACAAATGCTCTCTAACTCCGGCTCAGCGCCACCGTCTTCCTCTCCATCGGTTGTTCCACTGGCTGCCCCTCAAAATCAGTCACAGAATGTGTCTGCTAACTCAACACCTTCGTATCCAGTGGTCGTAGAGGGCACACCAGTTTCGTATTCATCGAACAACGAAACTCCCCAAACTCTCAACTGATTACACTTTGAAATCTCAAGCGAATCTCTTTTATTTATATTTTTACTGAATCATGAACTTTCTTTTCTGATTTTCGTGTTGTGAACTACTCGAGGTTTTTATCGAGATCTTGAGACAAGAATTGAATAAATTCGAATATTTATTCATTAATTATGAACTTAATGAACACAAAATGAAAATTCCGTTTTTAAAAATTTCGGAATTTCGGAAGATTCCGATTTTGAAAATTTCGAAATCTCGGAATTTTCCGATTTTCAAAAATTCAAGTGTTAAAGTAGAAATTCCATTTTTCCATTACAAAACACCAGAAATCAGGAAAAAATTCTGAAAAGTCAGTAAAAACGCAAAAAATTGGAAGTAATTCTGCCCGCAATCTGTTTTTTCGCGACATACCGTAGTCAAAAAATTTCTAAATCCGAAAAAAAATTCGGAAAACTTCCGGTTGGAATTTCATTCCGAAAATAGTCGGAAATTTCGAAAATTTTGAATTCCGTTCCGAACATCCCTGATTTTCGGCCAGAAGGCTCATCGGCGCCAAGAAAAATGAAAGTGAACTTCAAGAATCTTTTTTTTTCAAAAAAAAATATGTCAAATACATACACTTTCTGAATTTTCATAATGATTCAAAACGTTTTTTCTTGAAAACCTGTATTTTTTATCCTACAAATTCGTAATTAATTTTTCAATTCTTACGGAAAATCAGGAAATCGATAGTTTATGACATAATTCTAT</canonical>
            <polymorphic>CTATAACGAGGAGAAACTGACAGTATGCTTGAACTCTAAATTTTTCTCACTAGAATCTTTCTCGTTTCAGGCAAGCGATCTCGCACAAATGCTCTCTAACTCCGGCTCAGCGCCACCGTCTTCCTCTCCATCGGTTGTTCCACTGGCTGCCCCTCAAAATCAGTCACAGAATGTGTCTGCTAACTCAACACCTTCGTATCCAGTGGTCGTAGAGGGCACACCAGTTTCGTATTCATCGAACAACGAAACTCCCCAAACTCTCAACTGATTACACTTTGAAATCTCAAGCGAATCTCTTTTATTTATATTTTTACTGAATCATGAACTTTCTTTTCTGATTTTCGTGTTGTGAACTACTCGAGGTTTTTATCGAGATCTTGAGACAAGAATTGAATAAATTCGAATATTTATTCATTAATTATGAACTTAATGAACACAAAATGAAAATTCCGTTTTTAAAAATTTCGGAATTTCGGAAGATTCCGATTTTGAAAATTTCSAAATCTCGGAATTTTCCGATTTTCAAAAATTCAAGTGTTAAAGTAGAAATTCCATTTTTCCATTACAAAACACCAGAAATCAGGAAAAAATTCTGAAAAGTCAGTAAAAACGCAAAAAATTGGAAGTAATTCTGCCCGCAATCTGTTTTTTCGCGACATACCGTAGTCAAAAAATTTCTAAATCCGAAAAAAAATTCGGAAAACTTCCGGTTGGAATTTCATTCCGAAAATAGTCGGAAATTTCGAAAATTTTGAATTCCGTTCCGAACATCCCTGATTTTCGGCCAGAAGGCTCATCGGCGCCAAGAAAAATGAAAGTGAACTTCAAGAATCTTTTTTTTTCAAAAAAAAATATGTCAAATACATACACTTTCTGAATTTTCATAATGATTCAAAACGTTTTTTCTTGAAAACCTGTATTTTTTATCCTACAAATTCGTAATTAATTTTTCAATTCTTACGGAAAATCAGGAAATCGATAGTTTATGACATAATTCTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>400 257 245 98</canonical_bands>
                <polymorphic_bands>400 343 257</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>245 237 233 122 98 30 23 12</canonical_bands>
                <polymorphic_bands>343 237 233 122 30 23 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCTTGAGACAAGAATTGAATAA</pcr_primer_p1>
		<pcr_primer_p2>TGAAGTTCACTTTCATTTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>454</pcr_amplicon_size>
		<canonical_amplicon>GATCTTGAGACAAGAATTGAATAAATTCGAATATTTATTCATTAATTATGAACTTAATGAACACAAAATGAAAATTCCGTTTTTAAAAATTTCGGAATTTCGGAAGATTCCGATTTTGAAAATTTCGAAATCTCGGAATTTTCCGATTTTCAAAAATTCAAGTGTTAAAGTAGAAATTCCATTTTTCCATTACAAAACACCAGAAATCAGGAAAAAATTCTGAAAAGTCAGTAAAAACGCAAAAAATTGGAAGTAATTCTGCCCGCAATCTGTTTTTTCGCGACATACCGTAGTCAAAAAATTTCTAAATCCGAAAAAAAATTCGGAAAACTTCCGGTTGGAATTTCATTCCGAAAATAGTCGGAAATTTCGAAAATTTTGAATTCCGTTCCGAACATCCCTGATTTTCGGCCAGAAGGCTCATCGGCGCCAAGAAAAATGAAAGTGAACTTCA</canonical_amplicon>
		<polymorphic_amplicon>GATCTTGAGACAAGAATTGAATAAATTCGAATATTTATTCATTAATTATGAACTTAATGAACACAAAATGAAAATTCCGTTTTTAAAAATTTCGGAATTTCGGAAGATTCCGATTTTGAAAATTTCSAAATCTCGGAATTTTCCGATTTTCAAAAATTCAAGTGTTAAAGTAGAAATTCCATTTTTCCATTACAAAACACCAGAAATCAGGAAAAAATTCTGAAAAGTCAGTAAAAACGCAAAAAATTGGAAGTAATTCTGCCCGCAATCTGTTTTTTCGCGACATACCGTAGTCAAAAAATTTCTAAATCCGAAAAAAAATTCGGAAAACTTCCGGTTGGAATTTCATTCCGAAAATAGTCGGAAATTTCGAAAATTTTGAATTCCGTTCCGAACATCCCTGATTTTCGGCCAGAAGGCTCATCGGCGCCAAGAAAAATGAAAGTGAACTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24057</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>496962</contig_pos>
        <strand>+</strand>
        <context>GCGAGAATGA[C/G]AKAGCASCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGA</left_flank>
        <right_flank>ATAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGAAACTTCCAGACCATTTTGCTCCACCGGCACAGTGGTGTTATAAACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGGGATCTTCCAAATGCTCCGTCTCCGCTTTTGCCTGCTCAACTGTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATAGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACATAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAATTAACGTTTTTTCTCTAATCTAAGCCTACTCAAATTGTAACTTTAAGCACAATCATCTCAATTTCCATGAAAGATATCAAAAATTAGTCAACTGATAAAATATTGGTGGTAGTATGATAAACAATTTATCTGTTGACAAATTTTTGATATATTTCCAAGAAATCGAGATAAGTGAGCTCAAATTAGAAAAAATACTGCATACCTGTGACGAAGAAGAAGCACTAGCGAATCTGGTTCCTCCAGATTTTTCATCGATCGTCAATCCGGTTACAGGGGCATCGTGAGCTGAATAAACTCTCACCGCTTTCGTCGAACGAGTCGGATCTGCTTCATGAGCACTGGAAATTATAGTTGCAAGACATAAATTTTTCAGAAAATCTTACAAATCACTCATCGAATGCAATTTGATCAG</canonical>
            <polymorphic>GAAGAAACTTCCAGACCATTTTGCTCCACCGGCACAGTGGTGTTATAAACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGGGATCTTCCAAATGCTCCGTCTCCGCTTTTGCCTGCTCAACTGTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATAGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGASATAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAATTAACGTTTTTTCTCTAATCTAAGCCTACTCAAATTGTAACTTTAAGCACAATCATCTCAATTTCCATGAAAGATATCAAAAATTAGTCAACTGATAAAATATTGGTGGTAGTATGATAAACAATTTATCTGTTGACAAATTTTTGATATATTTCCAAGAAATCGAGATAAGTGAGCTCAAATTAGAAAAAATACTGCATACCTGTGACGAAGAAGAAGCACTAGCGAATCTGGTTCCTCCAGATTTTTCATCGATCGTCAATCCGGTTACAGGGGCATCGTGAGCTGAATAAACTCTCACCGCTTTCGTCGAACGAGTCGGATCTGCTTCATGAGCACTGGAAATTATAGTTGCAAGACATAAATTTTTCAGAAAATCTTACAAATCACTCATCGAATGCAATTTGATCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGGGTAGAAGACCTAAATAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTGGTTTCTAGATTTTCATCTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATAGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACATAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAAT</canonical_amplicon>
		<polymorphic_amplicon>GTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATAGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGASATAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24058</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>496964</contig_pos>
        <strand>+</strand>
        <context>GAGAATGASA[G/T]AGCASCAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACA</left_flank>
        <right_flank>AGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAACTTCCAGACCATTTTGCTCCACCGGCACAGTGGTGTTATAAACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGGGATCTTCCAAATGCTCCGTCTCCGCTTTTGCCTGCTCAACTGTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATAGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACATAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAATTAACGTTTTTTCTCTAATCTAAGCCTACTCAAATTGTAACTTTAAGCACAATCATCTCAATTTCCATGAAAGATATCAAAAATTAGTCAACTGATAAAATATTGGTGGTAGTATGATAAACAATTTATCTGTTGACAAATTTTTGATATATTTCCAAGAAATCGAGATAAGTGAGCTCAAATTAGAAAAAATACTGCATACCTGTGACGAAGAAGAAGCACTAGCGAATCTGGTTCCTCCAGATTTTTCATCGATCGTCAATCCGGTTACAGGGGCATCGTGAGCTGAATAAACTCTCACCGCTTTCGTCGAACGAGTCGGATCTGCTTCATGAGCACTGGAAATTATAGTTGCAAGACATAAATTTTTCAGAAAATCTTACAAATCACTCATCGAATGCAATTTGATCAGTC</canonical>
            <polymorphic>AGAAACTTCCAGACCATTTTGCTCCACCGGCACAGTGGTGTTATAAACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGGGATCTTCCAAATGCTCCGTCTCCGCTTTTGCCTGCTCAACTGTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATAGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACAKAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAATTAACGTTTTTTCTCTAATCTAAGCCTACTCAAATTGTAACTTTAAGCACAATCATCTCAATTTCCATGAAAGATATCAAAAATTAGTCAACTGATAAAATATTGGTGGTAGTATGATAAACAATTTATCTGTTGACAAATTTTTGATATATTTCCAAGAAATCGAGATAAGTGAGCTCAAATTAGAAAAAATACTGCATACCTGTGACGAAGAAGAAGCACTAGCGAATCTGGTTCCTCCAGATTTTTCATCGATCGTCAATCCGGTTACAGGGGCATCGTGAGCTGAATAAACTCTCACCGCTTTCGTCGAACGAGTCGGATCTGCTTCATGAGCACTGGAAATTATAGTTGCAAGACATAAATTTTTCAGAAAATCTTACAAATCACTCATCGAATGCAATTTGATCAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGGGTAGAAGACCTAAATAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTGGTTTCTAGATTTTCATCTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATAGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACATAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAAT</canonical_amplicon>
		<polymorphic_amplicon>GTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATAGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACAKAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24059</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>496969</contig_pos>
        <strand>+</strand>
        <context>TGASAKAGCA[C/G]CAATTGCAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACATAGCA</left_flank>
        <right_flank>CAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCCAGACCATTTTGCTCCACCGGCACAGTGGTGTTATAAACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGGGATCTTCCAAATGCTCCGTCTCCGCTTTTGCCTGCTCAACTGTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATAGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACATAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAATTAACGTTTTTTCTCTAATCTAAGCCTACTCAAATTGTAACTTTAAGCACAATCATCTCAATTTCCATGAAAGATATCAAAAATTAGTCAACTGATAAAATATTGGTGGTAGTATGATAAACAATTTATCTGTTGACAAATTTTTGATATATTTCCAAGAAATCGAGATAAGTGAGCTCAAATTAGAAAAAATACTGCATACCTGTGACGAAGAAGAAGCACTAGCGAATCTGGTTCCTCCAGATTTTTCATCGATCGTCAATCCGGTTACAGGGGCATCGTGAGCTGAATAAACTCTCACCGCTTTCGTCGAACGAGTCGGATCTGCTTCATGAGCACTGGAAATTATAGTTGCAAGACATAAATTTTTCAGAAAATCTTACAAATCACTCATCGAATGCAATTTGATCAGTCGATCT</canonical>
            <polymorphic>CTTCCAGACCATTTTGCTCCACCGGCACAGTGGTGTTATAAACATAATCTCCAATATCTTCCTCTTCTTGTGGTGGAGTACGTGGTTCTGCGTACGGGTTGTACTCTTGATACTGAGCAGTTGAGGAGTCTTCTGAATATTATTCATTTGTGTACCTATCCCAATATAATGAATGATCTACCTGGCTGATAATCACTGGCTTCCTCTCCTTGCTGCGTATAGTATTGTTGACTTTCAGCTGCTGATTGACTGTAGTCACTTGGTGGTTCATTTTCCTGTTGATAATAGGGATCTTCCAAATGCTCCGTCTCCGCTTTTGCCTGCTCAACTGTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATAGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACATAGCASCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAATTAACGTTTTTTCTCTAATCTAAGCCTACTCAAATTGTAACTTTAAGCACAATCATCTCAATTTCCATGAAAGATATCAAAAATTAGTCAACTGATAAAATATTGGTGGTAGTATGATAAACAATTTATCTGTTGACAAATTTTTGATATATTTCCAAGAAATCGAGATAAGTGAGCTCAAATTAGAAAAAATACTGCATACCTGTGACGAAGAAGAAGCACTAGCGAATCTGGTTCCTCCAGATTTTTCATCGATCGTCAATCCGGTTACAGGGGCATCGTGAGCTGAATAAACTCTCACCGCTTTCGTCGAACGAGTCGGATCTGCTTCATGAGCACTGGAAATTATAGTTGCAAGACATAAATTTTTCAGAAAATCTTACAAATCACTCATCGAATGCAATTTGATCAGTCGATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>72 68 68 66 63 62 59 58 51 43 42 38 37 33 33 30 28 28 21 17 15 14 14 9 7 6 5 3 3 3 2 2</canonical_bands>
                <polymorphic_bands>72 68 68 66 63 62 59 58 57 51 43 38 37 33 33 30 28 28 21 17 14 14 9 7 6 5 3 3 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGGGGTAGAAGACCTAAATAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTGGTTTCTAGATTTTCATCTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATAGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACATAGCACCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAAT</canonical_amplicon>
		<polymorphic_amplicon>GTGGGGTAGAAGACCTAAATAACAAAATTGGAGGTGTGAAATGGGAGAGAACTGCCTAACCATGTGCTGAGGGCTTTCCTCTCCAACTCCAGGAATATAGAAAATCTGCAACATTCCTTCATCACCACCGGACAGCAAATGCCGGCTAGTTGGCGAGAATGACATAGCASCAATTGCAGAAGTGTGATCGTTAACGATAGACATGATTGGAGTGGTCAGTTCGATGTGCCAGATGAAAATCTAGAAACCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24060</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>498466</contig_pos>
        <strand>+</strand>
        <context>AAAAGACAGA[A/C]TTTAAATTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATAAAATCATTGGTTGAAAACCTTCGGTAGTACAAAAAAAAAGACAGA</left_flank>
        <right_flank>TTTAAATTAGCAAACTAATTTTATAAACAAAATCATGAAAAAATCACAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATCTGAAAAGCACCGTACTTTCTTATACTTTCTGTTTTTCAAGCACTTACACTGTCCATCCACAGAAACATCTGCCGACTGTATAGCAGTTTGTGACGTTGTCAGAATCATCTTCTCGTCCAAAAATATACTATCTTCTGCACGATTCTCACATCTGAAGTTCAAAAATCAAAAATCATAATTTCATTCAACACTTACAAAATCCAGAGCTTCGAATTCTCATGCGAAACGGAAATCACTCCGATTTGCCCTCCAAAACGGAAACTCCAAACTCCAACTAGCGACCGATTATGAGCTTTAAAAAAGAAACAGAGTTGATCATTCAGAAGTTCAAAGTACCTTTTTCATACTTTCCCACCATTCTGGCCTTTGGTATGTCTTCATCGTTCATAGAATCGTCCATTCTGGATCTACGGGTAATTTTAATAATCAAGGAAAAAGCTATTTAAATAAAATCATTGGTTGAAAACCTTCGGTAGTACAAAAAAAAAGACAGATTTTAAATTAGCAAACTAATTTTATAAACAAAATCATGAAAAAATCACAAACAACCTTATGCTTAAAAACCGATAAAAGAAAAATAAATTAAAGAGAAAATTGATCTAGAACCACTTTTGATCGTTCTTCCAGCATGCGTGTAGATCTTCAATTGCAGCCGAGTCGTACCGCTCAACGAACGACTTGATGACACCAGATGCATCAGATGGGTAGGTCACCAAGGACACTTCTGGAATAAAAATATTAGAAAAATCTTCAAGTTTCAGAATCACCTCCACTCTTCTCGACAGTGTTTGGCTGCACAAAAAGACGTCTCGGCTTGCGGCGAGCGATACAGACATCACGCCAGTGGAGCTCAGTTTCCCCAACAGCTCCATAGGACTCGAAGAGCTTCTTTCCACCCTCAAAATCTCCAGTCGATTTGTAAGCTTGAAGTTTACGAAGGAATTCAACGACAGCTGGACGACCGACAGAATCGATCAAGTTGCGATCGAGCTTGA</canonical>
            <polymorphic>ACATCTGAAAAGCACCGTACTTTCTTATACTTTCTGTTTTTCAAGCACTTACACTGTCCATCCACAGAAACATCTGCCGACTGTATAGCAGTTTGTGACGTTGTCAGAATCATCTTCTCGTCCAAAAATATACTATCTTCTGCACGATTCTCACATCTGAAGTTCAAAAATCAAAAATCATAATTTCATTCAACACTTACAAAATCCAGAGCTTCGAATTCTCATGCGAAACGGAAATCACTCCGATTTGCCCTCCAAAACGGAAACTCCAAACTCCAACTAGCGACCGATTATGAGCTTTAAAAAAGAAACAGAGTTGATCATTCAGAAGTTCAAAGTACCTTTTTCATACTTTCCCACCATTCTGGCCTTTGGTATGTCTTCATCGTTCATAGAATCGTCCATTCTGGATCTACGGGTAATTTTAATAATCAAGGAAAAAGCTATTTAAATAAAATCATTGGTTGAAAACCTTCGGTAGTACAAAAAAAAAGACAGAMTTTAAATTAGCAAACTAATTTTATAAACAAAATCATGAAAAAATCACAAACAACCTTATGCTTAAAAACCGATAAAAGAAAAATAAATTAAAGAGAAAATTGATCTAGAACCACTTTTGATCGTTCTTCCAGCATGCGTGTAGATCTTCAATTGCAGCCGAGTCGTACCGCTCAACGAACGACTTGATGACACCAGATGCATCAGATGGGTAGGTCACCAAGGACACTTCTGGAATAAAAATATTAGAAAAATCTTCAAGTTTCAGAATCACCTCCACTCTTCTCGACAGTGTTTGGCTGCACAAAAAGACGTCTCGGCTTGCGGCGAGCGATACAGACATCACGCCAGTGGAGCTCAGTTTCCCCAACAGCTCCATAGGACTCGAAGAGCTTCTTTCCACCCTCAAAATCTCCAGTCGATTTGTAAGCTTGAAGTTTACGAAGGAATTCAACGACAGCTGGACGACCGACAGAATCGATCAAGTTGCGATCGAGCTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGTTCAAAGTACCTTTTTCA</pcr_primer_p1>
		<pcr_primer_p2>TTATCGGTTTTTAAGCATAAGG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGAAGTTCAAAGTACCTTTTTCATACTTTCCCACCATTCTGGCCTTTGGTATGTCTTCATCGTTCATAGAATCGTCCATTCTGGATCTACGGGTAATTTTAATAATCAAGGAAAAAGCTATTTAAATAAAATCATTGGTTGAAAACCTTCGGTAGTACAAAAAAAAAGACAGATTTTAAATTAGCAAACTAATTTTATAAACAAAATCATGAAAAAATCACAAACAACCTTATGCTTAAAAACCGATAA</canonical_amplicon>
		<polymorphic_amplicon>AGAAGTTCAAAGTACCTTTTTCATACTTTCCCACCATTCTGGCCTTTGGTATGTCTTCATCGTTCATAGAATCGTCCATTCTGGATCTACGGGTAATTTTAATAATCAAGGAAAAAGCTATTTAAATAAAATCATTGGTTGAAAACCTTCGGTAGTACAAAAAAAAAGACAGAMTTTAAATTAGCAAACTAATTTTATAAACAAAATCATGAAAAAATCACAAACAACCTTATGCTTAAAAACCGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24061</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>508541</contig_pos>
        <strand></strand>
        <context>GCaaaaaaat[A/G]aatgaatgaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTGGCGCAGAGATAATGGAAGAGAATCGATCGCAGACAGGCAAAAAAAT</left_flank>
        <right_flank>AATGAATGAAGAGAAAAAGAGGAGAAAAGAAAAAGACAGGAAACACAAAC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGGGTGAAATGGAGAAGTCTCGTGATGACAGCTTGAGCGGAAATTTAAACTTCATCGAGCTCGTGGAATAATTAAGTAACACATGGGAACTTTCACTGGCTAGAAGATCTTGTATTTGGAATGTTTCTTTCAAAAAGAACCATTTTGCACTGCTCGAATAGCTGTTTATTTTAGAAATCCAAGACCTCAAAATGCTATTTTTCAAGTTCCCGAAAAAAACAAAGAGCGAGAAGAAGAGGAAGCAAAAATATCATAATATGTGTCTCTCTCAACAAAAAGTAAACAAAAAAACGCACGAAAAAACTGGGGGAAACGCTACAAAACAGTGTATTATCAAGCCCTGACAGTCACACAATGCCCTAGACCTGCCCGCTAATTTGATACATCACTGAATTTTCAAAAAATTAGTGCTGTGGAATTTTGGCGGGAAGGTGTAGGCGATCGGGGTGTTGGCGCAGAGATAATGGAAGAGAATCGATCGCAGACAGGCAAAAAAATAAATGAATGAAGAGAAAAAGAGGAGAAAAGAAAAAGACAGGAAACACAAACGGAAATAACAATAGAGAGAGTGAAGTGGATTGTAAAAGAGTAAAGGTTAGGAAAAAACTAACTTGAAAAATGGAAGTACGACAAGTGCGCTCTAAAGATAATGAAAAATCTTGTTTGAAAAGCAAACGGATTGACCCTTATTATCCTGGTACAAAAATATTGAGGCTGTGGAAGAGAAACTGGTGGAAGGTCCCACAACGATAACTACAGTAACCTAAAAATATTTTCATTTTCAGAATTTATTACCTCGATTTTCGTTTGTTTTCCGTCAACTTCTCACCATGAAAAATTCTATTTTCCGAATTGTTAGGAAAAATAACAGAAAACTCGACGAAAAACAGTGAACAACGAGAAAAAATCGGAGAATAAAAGTATTATTAGGTTATTGTAGTTGTCGTTGCGGGACCATCGGCTACGGACACCGGCGTTTCTCTTCCATAGCTTTCATTT</canonical>
            <polymorphic>AGGGGTGAAATGGAGAAGTCTCGTGATGACAGCTTGAGCGGAAATTTAAACTTCATCGAGCTCGTGGAATAATTAAGTAACACATGGGAACTTTCACTGGCTAGAAGATCTTGTATTTGGAATGTTTCTTTCAAAAAGAACCATTTTGCACTGCTCGAATAGCTGTTTATTTTAGAAATCCAAGACCTCAAAATGCTATTTTTCAAGTTCCCGAAAAAAACAAAGAGCGAGAAGAAGAGGAAGCAAAAATATCATAATATGTGTCTCTCTCAACAAAAAGTAAACAAAAAAACGCACGAAAAAACTGGGGGAAACGCTACAAAACAGTGTATTATCAAGCCCTGACAGTCACACAATGCCCTAGACCTGCCCGCTAATTTGATACATCACTGAATTTTCAAAAAATTAGTGCTGTGGAATTTTGGCGGGAAGGTGTAGGCGATCGGGGTGTTGGCGCAGAGATAATGGAAGAGAATCGATCGCAGACAGGCAAAAAAATRAATGAATGAAGAGAAAAAGAGGAGAAAAGAAAAAGACAGGAAACACAAACGGAAATAACAATAGAGAGAGTGAAGTGGATTGTAAAAGAGTAAAGGTTAGGAAAAAACTAACTTGAAAAATGGAAGTACGACAAGTGCGCTCTAAAGATAATGAAAAATCTTGTTTGAAAAGCAAACGGATTGACCCTTATTATCCTGGTACAAAAATATTGAGGCTGTGGAAGAGAAACTGGTGGAAGGTCCCACAACGATAACTACAGTAACCTAAAAATATTTTCATTTTCAGAATTTATTACCTCGATTTTCGTTTGTTTTCCGTCAACTTCTCACCATGAAAAATTCTATTTTCCGAATTGTTAGGAAAAATAACAGAAAACTCGACGAAAAACAGTGAACAACGAGAAAAAATCGGAGAATAAAAGTATTATTAGGTTATTGTAGTTGTCGTTGCGGGACCATCGGCTACGGACACCGGCGTTTCTCTTCCATAGCTTTCATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTAGTGCTGTGGAATTTTG</pcr_primer_p1>
		<pcr_primer_p2>ATTATCTTTAGAGCGCACTTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTAGTGCTGTGGAATTTTGGCGGGAAGGTGTAGGCGATCGGGGTGTTGGCGCAGAGATAATGGAAGAGAATCGATCGCAGACAGGCAAAAAAATAAATGAATGAAGAGAAAAAGAGGAGAAAAGAAAAAGACAGGAAACACAAACGGAAATAACAATAGAGAGAGTGAAGTGGATTGTAAAAGAGTAAAGGTTAGGAAAAAACTAACTTGAAAAATGGAAGTACGACAAGTGCGCTCTAAAGATAAT</canonical_amplicon>
		<polymorphic_amplicon>AAATTAGTGCTGTGGAATTTTGGCGGGAAGGTGTAGGCGATCGGGGTGTTGGCGCAGAGATAATGGAAGAGAATCGATCGCAGACAGGCAAAAAAATRAATGAATGAAGAGAAAAAGAGGAGAAAAGAAAAAGACAGGAAACACAAACGGAAATAACAATAGAGAGAGTGAAGTGGATTGTAAAAGAGTAAAGGTTAGGAAAAAACTAACTTGAAAAATGGAAGTACGACAAGTGCGCTCTAAAGATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24062</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>521590</contig_pos>
        <strand>+</strand>
        <context>GTTCGTATCT[C/T]TAAGACTGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGCTGATAAAACTGGGTTTATTAGATCAATAAATTAACGTTCGTATCT</left_flank>
        <right_flank>TAAGACTGCAATGTTAGATGAGTTTCAATCCTGATATGCACAACAAAGTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCAATAGACAGGAAAATGGTATCAAAAACGATATCGGAAAAAATAGGTCTGAACGTAACTGAATTTTTCGCGTCAACTGAAACACGTACTAGAAGAAAGACACGATTTCTCAAAAATCTAAACTAAGGCGAAACTTCTTTGTCAACCGCACTCTGAGTCTAATTGAGAACCCAAGGCCCCCTCTCTCTAATTTGTAAAATAATTTATTATTTCTGTTAATCATTATTGCAGGTATAATTTTTATTCTGTATGCGTGTATGTGTTGATGGTTATGTGCTATTATTTGGAAATAGTGTTACTATTCGGTTCTCCACTTTAATTGAATGTGTTGTCTAGTTATTCGTGTATCTGTGTTTTGTGTGATTGTATTGTATTCCTTTTCTCTTTTTTCTCTTTTTCCACGACGGAAGGTCGTAATCAATAAATAAATAAATAAAAAAGGGCAATTTTTGCTGATAAAACTGGGTTTATTAGATCAATAAATTAACGTTCGTATCTCTAAGACTGCAATGTTAGATGAGTTTCAATCCTGATATGCACAACAAAGTCGAGTACCCGCTTAATAGTCATTATACATGAAATCATGGAAAAAAAACTGGAGAAAAAATAAGCATTAAATCTCAACAAATGGAGAAACAGTGGATTTCGTAACGAATTCTGTTAGTATACGACGAGTAGGAATGAATGTCGCGTACAACTGTTTTCCATTTTTGTCATAAAAGTCGAGTCGAGCAGATTCATGTCCAAATTCGGCGTAGATGAATCCACCTTTCCGGAATCCAAGTTGTGACACTGGTGACCACGAGAACCAGGATTTTTCGGGATAACTGAAAAATGAAGTTCAGATACATTGTAATAGTTAAAACACTCACTTGAATTTCAAATTATCTTTACTGAATTCTTTGACATGTTTCGTCGAGGCATCTGCACGAGAAGCGGCTCCCGAAACTAAGTAGTGAATTTTGTGACCCTCATTTCCATCGTATTCGAAGTGCTGCA</canonical>
            <polymorphic>AGCAATAGACAGGAAAATGGTATCAAAAACGATATCGGAAAAAATAGGTCTGAACGTAACTGAATTTTTCGCGTCAACTGAAACACGTACTAGAAGAAAGACACGATTTCTCAAAAATCTAAACTAAGGCGAAACTTCTTTGTCAACCGCACTCTGAGTCTAATTGAGAACCCAAGGCCCCCTCTCTCTAATTTGTAAAATAATTTATTATTTCTGTTAATCATTATTGCAGGTATAATTTTTATTCTGTATGCGTGTATGTGTTGATGGTTATGTGCTATTATTTGGAAATAGTGTTACTATTCGGTTCTCCACTTTAATTGAATGTGTTGTCTAGTTATTCGTGTATCTGTGTTTTGTGTGATTGTATTGTATTCCTTTTCTCTTTTTTCTCTTTTTCCACGACGGAAGGTCGTAATCAATAAATAAATAAATAAAAAAGGGCAATTTTTGCTGATAAAACTGGGTTTATTAGATCAATAAATTAACGTTCGTATCTYTAAGACTGCAATGTTAGATGAGTTTCAATCCTGATATGCACAACAAAGTCGAGTACCCGCTTAATAGTCATTATACATGAAATCATGGAAAAAAAACTGGAGAAAAAATAAGCATTAAATCTCAACAAATGGAGAAACAGTGGATTTCGTAACGAATTCTGTTAGTATACGACGAGTAGGAATGAATGTCGCGTACAACTGTTTTCCATTTTTGTCATAAAAGTCGAGTCGAGCAGATTCATGTCCAAATTCGGCGTAGATGAATCCACCTTTCCGGAATCCAAGTTGTGACACTGGTGACCACGAGAACCAGGATTTTTCGGGATAACTGAAAAATGAAGTTCAGATACATTGTAATAGTTAAAACACTCACTTGAATTTCAAATTATCTTTACTGAATTCTTTGACATGTTTCGTCGAGGCATCTGCACGAGAAGCGGCTCCCGAAACTAAGTAGTGAATTTTGTGACCCTCATTTCCATCGTATTCGAAGTGCTGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>450 346 124 50 30</canonical_bands>
                <polymorphic_bands>796 124 50 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTCTTTTTCCACGAC</pcr_primer_p1>
		<pcr_primer_p2>TCTCCATTTGTTGAGATTTAATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTCTTTTTCCACGACGGAAGGTCGTAATCAATAAATAAATAAATAAAAAAGGGCAATTTTTGCTGATAAAACTGGGTTTATTAGATCAATAAATTAACGTTCGTATCTCTAAGACTGCAATGTTAGATGAGTTTCAATCCTGATATGCACAACAAAGTCGAGTACCCGCTTAATAGTCATTATACATGAAATCATGGAAAAAAAACTGGAGAAAAAATAAGCATTAAATCTCAACAAATGGAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTCTTTTTCCACGACGGAAGGTCGTAATCAATAAATAAATAAATAAAAAAGGGCAATTTTTGCTGATAAAACTGGGTTTATTAGATCAATAAATTAACGTTCGTATCTYTAAGACTGCAATGTTAGATGAGTTTCAATCCTGATATGCACAACAAAGTCGAGTACCCGCTTAATAGTCATTATACATGAAATCATGGAAAAAAAACTGGAGAAAAAATAAGCATTAAATCTCAACAAATGGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24063</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>522383</contig_pos>
        <strand>+</strand>
        <context>ACAATGAAAT[G/T]GTATCAATCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGATGAAGCCAGCATTTTGGATATCTTTAGTGTTTCCACACAATGAAAT</left_flank>
        <right_flank>GTATCAATCATAATGAAATCGATGCGAGTTCCGTTGAATTCCTCGCTTTG</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGGTGACCACGAGAACCAGGATTTTTCGGGATAACTGAAAAATGAAGTTCAGATACATTGTAATAGTTAAAACACTCACTTGAATTTCAAATTATCTTTACTGAATTCTTTGACATGTTTCGTCGAGGCATCTGCACGAGAAGCGGCTCCCGAAACTAAGTAGTGAATTTTGTGACCCTCATTTCCATCGTATTCGAAGTGCTGCAAGGAATGGTCGTGTCCTGAGAAGTATGCATTGACGTTGTATCGCTTCAATAGTGGATCGAGTCGAATACGGAGGCATTCTGTTGGCCCATGGGATGACATGGAATGCATTGGATAATGGCCAGATACAATCAAATATTGGGCACTGCTTTGACTCAACATCGTCTCCAGCCATGTCCACTGCTCCTCAGCGGCACTCACATTCGCCGGACCTCTCGGATCATGGGACTCATTTCGCAGCATTTCGATGAAGCCAGCATTTTGGATATCTTTAGTGTTTCCACACAATGAAATTGTATCAATCATAATGAAATCGATGCGAGTTCCGTTGAATTCCTCGCTTTGTTTGTAGTAGAGAGACGGGAAGTACCACTTTCGACTATGCTTCGTGTACTCGATTTCAGCAGTAACGTTCCCAAAATGATCATGATTTCCGGCGATTGTAAGCCATTTGACTTGGAGGCTCGGAGAGTCGTAGACTGCCTCGAATCGGGTCTGGAACGAAATTTATTACATTTTAACGATGCATTGATGTGGTCTCACAACGAAAACCACCGTAATCTAAGAATATGTCTGTTTTCCGGATTTTATATCTCTATTTTCGTACAGACTAAAACAGAAAAATCTACAAAAAAAACAGAATTTTTAGGTTACTGTAGTTGTCGTTGTGGGACCATTTTTGTACAGAAATAATATACAACTGTAGCAGAGAATGTGGCAAATCGCTATCACACAATAAAAAGAGAACAATATATGACTCATTCCATGCATTTCTTCCATTCTCTCTTTTTTTAT</canonical>
            <polymorphic>CTGGTGACCACGAGAACCAGGATTTTTCGGGATAACTGAAAAATGAAGTTCAGATACATTGTAATAGTTAAAACACTCACTTGAATTTCAAATTATCTTTACTGAATTCTTTGACATGTTTCGTCGAGGCATCTGCACGAGAAGCGGCTCCCGAAACTAAGTAGTGAATTTTGTGACCCTCATTTCCATCGTATTCGAAGTGCTGCAAGGAATGGTCGTGTCCTGAGAAGTATGCATTGACGTTGTATCGCTTCAATAGTGGATCGAGTCGAATACGGAGGCATTCTGTTGGCCCATGGGATGACATGGAATGCATTGGATAATGGCCAGATACAATCAAATATTGGGCACTGCTTTGACTCAACATCGTCTCCAGCCATGTCCACTGCTCCTCAGCGGCACTCACATTCGCCGGACCTCTCGGATCATGGGACTCATTTCGCAGCATTTCGATGAAGCCAGCATTTTGGATATCTTTAGTGTTTCCACACAATGAAATKGTATCAATCATAATGAAATCGATGCGAGTTCCGTTGAATTCCTCGCTTTGTTTGTAGTAGAGAGACGGGAAGTACCACTTTCGACTATGCTTCGTGTACTCGATTTCAGCAGTAACGTTCCCAAAATGATCATGATTTCCGGCGATTGTAAGCCATTTGACTTGGAGGCTCGGAGAGTCGTAGACTGCCTCGAATCGGGTCTGGAACGAAATTTATTACATTTTAACGATGCATTGATGTGGTCTCACAACGAAAACCACCGTAATCTAAGAATATGTCTGTTTTCCGGATTTTATATCTCTATTTTCGTACAGACTAAAACAGAAAAATCTACAAAAAAAACAGAATTTTTAGGTTACTGTAGTTGTCGTTGTGGGACCATTTTTGTACAGAAATAATATACAACTGTAGCAGAGAATGTGGCAAATCGCTATCACACAATAAAAAGAGAACAATATATGACTCATTCCATGCATTTCTTCCATTCTCTCTTTTTTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>330 173 155 136 83 62 40 14 7</canonical_bands>
                <polymorphic_bands>370 173 155 136 83 62 14 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAATGGCCAGATACAATCAAA</pcr_primer_p1>
		<pcr_primer_p2>CTACTACAAACAAAGCGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATAATGGCCAGATACAATCAAATATTGGGCACTGCTTTGACTCAACATCGTCTCCAGCCATGTCCACTGCTCCTCAGCGGCACTCACATTCGCCGGACCTCTCGGATCATGGGACTCATTTCGCAGCATTTCGATGAAGCCAGCATTTTGGATATCTTTAGTGTTTCCACACAATGAAATTGTATCAATCATAATGAAATCGATGCGAGTTCCGTTGAATTCCTCGCTTTGTTTGTAGTAG</canonical_amplicon>
		<polymorphic_amplicon>ATAATGGCCAGATACAATCAAATATTGGGCACTGCTTTGACTCAACATCGTCTCCAGCCATGTCCACTGCTCCTCAGCGGCACTCACATTCGCCGGACCTCTCGGATCATGGGACTCATTTCGCAGCATTTCGATGAAGCCAGCATTTTGGATATCTTTAGTGTTTCCACACAATGAAATKGTATCAATCATAATGAAATCGATGCGAGTTCCGTTGAATTCCTCGCTTTGTTTGTAGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24064</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>522741</contig_pos>
        <strand></strand>
        <context>tttttaggtt[A/T]ctgtagttgt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGTACAGACTAAAACAGAAAAATCTACAAAAAAAACAGAATTTTTAGGTT</left_flank>
        <right_flank>CTGTAGTTGTCGTTGTGGGACCATTTTTGTACAGAAATAATATACAACTG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCAACATCGTCTCCAGCCATGTCCACTGCTCCTCAGCGGCACTCACATTCGCCGGACCTCTCGGATCATGGGACTCATTTCGCAGCATTTCGATGAAGCCAGCATTTTGGATATCTTTAGTGTTTCCACACAATGAAATTGTATCAATCATAATGAAATCGATGCGAGTTCCGTTGAATTCCTCGCTTTGTTTGTAGTAGAGAGACGGGAAGTACCACTTTCGACTATGCTTCGTGTACTCGATTTCAGCAGTAACGTTCCCAAAATGATCATGATTTCCGGCGATTGTAAGCCATTTGACTTGGAGGCTCGGAGAGTCGTAGACTGCCTCGAATCGGGTCTGGAACGAAATTTATTACATTTTAACGATGCATTGATGTGGTCTCACAACGAAAACCACCGTAATCTAAGAATATGTCTGTTTTCCGGATTTTATATCTCTATTTTCGTACAGACTAAAACAGAAAAATCTACAAAAAAAACAGAATTTTTAGGTTACTGTAGTTGTCGTTGTGGGACCATTTTTGTACAGAAATAATATACAACTGTAGCAGAGAATGTGGCAAATCGCTATCACACAATAAAAAGAGAACAATATATGACTCATTCCATGCATTTCTTCCATTCTCTCTTTTTTTATAACCACTCTATTTTTTCTACATTTTTTTTCTCATTTTCTCACCTCAAATCTCGGATCGAATTCATCGGTTGGACCCGTAAAATAGATGTTATCACCCATGTTGAGCACCATCTGAACATCCTTCTCATTCGCTATCAAAGCCATTGTTTCCTTGACTCCACGTTGCGCCCAAGTGGTCTCCAGAATTGGAATTCCTAAAGAAATAGGGTTGAAAGTTTCTCATAAATAGATAGTTACCTCCAGTATCCCCGACGAGTAGGATTCTGAAAGTCTTCTCATTCCTCTGTGGATCCATCACATTGGCACTCCATAGTGGGACTTCATTCGGTGAAGAAACATCTGAAAATAACGAGGCAAA</canonical>
            <polymorphic>ACTCAACATCGTCTCCAGCCATGTCCACTGCTCCTCAGCGGCACTCACATTCGCCGGACCTCTCGGATCATGGGACTCATTTCGCAGCATTTCGATGAAGCCAGCATTTTGGATATCTTTAGTGTTTCCACACAATGAAATTGTATCAATCATAATGAAATCGATGCGAGTTCCGTTGAATTCCTCGCTTTGTTTGTAGTAGAGAGACGGGAAGTACCACTTTCGACTATGCTTCGTGTACTCGATTTCAGCAGTAACGTTCCCAAAATGATCATGATTTCCGGCGATTGTAAGCCATTTGACTTGGAGGCTCGGAGAGTCGTAGACTGCCTCGAATCGGGTCTGGAACGAAATTTATTACATTTTAACGATGCATTGATGTGGTCTCACAACGAAAACCACCGTAATCTAAGAATATGTCTGTTTTCCGGATTTTATATCTCTATTTTCGTACAGACTAAAACAGAAAAATCTACAAAAAAAACAGAATTTTTAGGTTWCTGTAGTTGTCGTTGTGGGACCATTTTTGTACAGAAATAATATACAACTGTAGCAGAGAATGTGGCAAATCGCTATCACACAATAAAAAGAGAACAATATATGACTCATTCCATGCATTTCTTCCATTCTCTCTTTTTTTATAACCACTCTATTTTTTCTACATTTTTTTTCTCATTTTCTCACCTCAAATCTCGGATCGAATTCATCGGTTGGACCCGTAAAATAGATGTTATCACCCATGTTGAGCACCATCTGAACATCCTTCTCATTCGCTATCAAAGCCATTGTTTCCTTGACTCCACGTTGCGCCCAAGTGGTCTCCAGAATTGGAATTCCTAAAGAAATAGGGTTGAAAGTTTCTCATAAATAGATAGTTACCTCCAGTATCCCCGACGAGTAGGATTCTGAAAGTCTTCTCATTCCTCTGTGGATCCATCACATTGGCACTCCATAGTGGGACTTCATTCGGTGAAGAAACATCTGAAAATAACGAGGCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>451 403 99 47</canonical_bands>
                <polymorphic_bands>451 403 146</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>378 253 243 126</canonical_bands>
                <polymorphic_bands>621 253 126</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGTCTGGAACGAAATTTAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTATTGTGTGATAGCGATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGGTCTGGAACGAAATTTATTACATTTTAACGATGCATTGATGTGGTCTCACAACGAAAACCACCGTAATCTAAGAATATGTCTGTTTTCCGGATTTTATATCTCTATTTTCGTACAGACTAAAACAGAAAAATCTACAAAAAAAACAGAATTTTTAGGTTACTGTAGTTGTCGTTGTGGGACCATTTTTGTACAGAAATAATATACAACTGTAGCAGAGAATGTGGCAAATCGCTATCACACAATAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGGTCTGGAACGAAATTTATTACATTTTAACGATGCATTGATGTGGTCTCACAACGAAAACCACCGTAATCTAAGAATATGTCTGTTTTCCGGATTTTATATCTCTATTTTCGTACAGACTAAAACAGAAAAATCTACAAAAAAAACAGAATTTTTAGGTTWCTGTAGTTGTCGTTGTGGGACCATTTTTGTACAGAAATAATATACAACTGTAGCAGAGAATGTGGCAAATCGCTATCACACAATAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24065</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>522885</contig_pos>
        <strand>+</strand>
        <context>TTTTTTTATA[A/T]CCACTCTATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACAATATATGACTCATTCCATGCATTTCTTCCATTCTCTCTTTTTTTATA</left_flank>
        <right_flank>CCACTCTATTTTTTCTACATTTTTTTTCTCATTTTCTCACCTCAAATCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAATCATAATGAAATCGATGCGAGTTCCGTTGAATTCCTCGCTTTGTTTGTAGTAGAGAGACGGGAAGTACCACTTTCGACTATGCTTCGTGTACTCGATTTCAGCAGTAACGTTCCCAAAATGATCATGATTTCCGGCGATTGTAAGCCATTTGACTTGGAGGCTCGGAGAGTCGTAGACTGCCTCGAATCGGGTCTGGAACGAAATTTATTACATTTTAACGATGCATTGATGTGGTCTCACAACGAAAACCACCGTAATCTAAGAATATGTCTGTTTTCCGGATTTTATATCTCTATTTTCGTACAGACTAAAACAGAAAAATCTACAAAAAAAACAGAATTTTTAGGTTACTGTAGTTGTCGTTGTGGGACCATTTTTGTACAGAAATAATATACAACTGTAGCAGAGAATGTGGCAAATCGCTATCACACAATAAAAAGAGAACAATATATGACTCATTCCATGCATTTCTTCCATTCTCTCTTTTTTTATAACCACTCTATTTTTTCTACATTTTTTTTCTCATTTTCTCACCTCAAATCTCGGATCGAATTCATCGGTTGGACCCGTAAAATAGATGTTATCACCCATGTTGAGCACCATCTGAACATCCTTCTCATTCGCTATCAAAGCCATTGTTTCCTTGACTCCACGTTGCGCCCAAGTGGTCTCCAGAATTGGAATTCCTAAAGAAATAGGGTTGAAAGTTTCTCATAAATAGATAGTTACCTCCAGTATCCCCGACGAGTAGGATTCTGAAAGTCTTCTCATTCCTCTGTGGATCCATCACATTGGCACTCCATAGTGGGACTTCATTCGGTGAAGAAACATCTGAAAATAACGAGGCAAATCATTAGAAAAGATATTTTAAGCTCAAGTGATGAGGTTAATTGTGTTAATGAGGGCAATTAAAACCTGTAATAGAAGGGCTCCTGTCAAAGATATCAAAAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAACTGTTT</canonical>
            <polymorphic>ATCAATCATAATGAAATCGATGCGAGTTCCGTTGAATTCCTCGCTTTGTTTGTAGTAGAGAGACGGGAAGTACCACTTTCGACTATGCTTCGTGTACTCGATTTCAGCAGTAACGTTCCCAAAATGATCATGATTTCCGGCGATTGTAAGCCATTTGACTTGGAGGCTCGGAGAGTCGTAGACTGCCTCGAATCGGGTCTGGAACGAAATTTATTACATTTTAACGATGCATTGATGTGGTCTCACAACGAAAACCACCGTAATCTAAGAATATGTCTGTTTTCCGGATTTTATATCTCTATTTTCGTACAGACTAAAACAGAAAAATCTACAAAAAAAACAGAATTTTTAGGTTACTGTAGTTGTCGTTGTGGGACCATTTTTGTACAGAAATAATATACAACTGTAGCAGAGAATGTGGCAAATCGCTATCACACAATAAAAAGAGAACAATATATGACTCATTCCATGCATTTCTTCCATTCTCTCTTTTTTTATAWCCACTCTATTTTTTCTACATTTTTTTTCTCATTTTCTCACCTCAAATCTCGGATCGAATTCATCGGTTGGACCCGTAAAATAGATGTTATCACCCATGTTGAGCACCATCTGAACATCCTTCTCATTCGCTATCAAAGCCATTGTTTCCTTGACTCCACGTTGCGCCCAAGTGGTCTCCAGAATTGGAATTCCTAAAGAAATAGGGTTGAAAGTTTCTCATAAATAGATAGTTACCTCCAGTATCCCCGACGAGTAGGATTCTGAAAGTCTTCTCATTCCTCTGTGGATCCATCACATTGGCACTCCATAGTGGGACTTCATTCGGTGAAGAAACATCTGAAAATAACGAGGCAAATCATTAGAAAAGATATTTTAAGCTCAAGTGATGAGGTTAATTGTGTTAATGAGGGCAATTAAAACCTGTAATAGAAGGGCTCCTGTCAAAGATATCAAAAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAACTGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCGCTATCACACAATAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>GTGGAGTCAAGGAAACAATG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>AATCGCTATCACACAATAAAAAGAGAACAATATATGACTCATTCCATGCATTTCTTCCATTCTCTCTTTTTTTATAACCACTCTATTTTTTCTACATTTTTTTTCTCATTTTCTCACCTCAAATCTCGGATCGAATTCATCGGTTGGACCCGTAAAATAGATGTTATCACCCATGTTGAGCACCATCTGAACATCCTTCTCATTCGCTATCAAAGCCATTGTTTCCTTGACTCCAC</canonical_amplicon>
		<polymorphic_amplicon>AATCGCTATCACACAATAAAAAGAGAACAATATATGACTCATTCCATGCATTTCTTCCATTCTCTCTTTTTTTATAWCCACTCTATTTTTTCTACATTTTTTTTCTCATTTTCTCACCTCAAATCTCGGATCGAATTCATCGGTTGGACCCGTAAAATAGATGTTATCACCCATGTTGAGCACCATCTGAACATCCTTCTCATTCGCTATCAAAGCCATTGTTTCCTTGACTCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24066</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>523768</contig_pos>
        <strand></strand>
        <context>cgcctcgtgt[T/A]tgTCTAGAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTGATCGCAATTTTGAAAAACAGCTGAAAATTTACAAATCGCCTCGTGT</left_flank>
        <right_flank>TGTCTAGAATATATTTTTAATTAGTATATATATATATATATATATATATA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGATGAGGTTAATTGTGTTAATGAGGGCAATTAAAACCTGTAATAGAAGGGCTCCTGTCAAAGATATCAAAAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAACTGTTTTGTCAGTTGACACATTTTTCATATATTGTTTAGAATACTTAGATAATTGAGCTGAAAATGGAGACCTTCTAATACAGGTTATACTGTAAGAAGAACCAACGGAACATTCAGTAAAAGTTCGATAAGTTTTGAGACATAAGTTTTGAGAAAGCATGCAGGAACATAAGGACATCTAAAATCATGCATGAGGAGTTTTTGTGAATTTGGGGTTTTTTGAGATCGCGAAAATTTTGACAAATTCGCTGGCGATTTGGTGTTTTTAGAATAAAACAAATGTGAGAAACACAATGGTGTAAAAATGCGATCTGGAAAATTTGTAGTTTTCGGAATGTTTTGATCGCAATTTTGAAAAACAGCTGAAAATTTACAAATCGCCTCGTGTTTGTCTAGAATATATTTTTAATTAGTATATATATATATATATATATATATATTAATCTGTGCAATCTAACACCACCTAAATCCCGAACGAAAAACCAACTGGAGACTGCGATGAAGAAAAGCATTGTGACGCAGACGATTCCCGATAGGCACACCAGCTTCCGCATTTTTCGACGAGATTTCACTTTTTGCTGGAAATTTTGTATGAATGACAGATTAAACGATATACTAGACTATATATTCGTCATAAAGGCTAAAGTATTTAGTCGGGAGATTAGGTACTCTTTGGTTTGTTCAAATTCCAGTCAGTTGAAATTATGACGACAATAAATGGATCTTTAGGTTCGGTTGAATATTCAAAGGGGACGAAAAGTAAATAATATTTTTGTTGAAAAGGCTTTTTTTGGTCAGCATGATAGGCGGTTTTTATATGCAAATCTTCCCGATGAAAAATGAGTTATCGGAAGTCATGAAATGAGTCATCGGAAGTTTATTTTATTGA</canonical>
            <polymorphic>GTGATGAGGTTAATTGTGTTAATGAGGGCAATTAAAACCTGTAATAGAAGGGCTCCTGTCAAAGATATCAAAAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAACTGTTTTGTCAGTTGACACATTTTTCATATATTGTTTAGAATACTTAGATAATTGAGCTGAAAATGGAGACCTTCTAATACAGGTTATACTGTAAGAAGAACCAACGGAACATTCAGTAAAAGTTCGATAAGTTTTGAGACATAAGTTTTGAGAAAGCATGCAGGAACATAAGGACATCTAAAATCATGCATGAGGAGTTTTTGTGAATTTGGGGTTTTTTGAGATCGCGAAAATTTTGACAAATTCGCTGGCGATTTGGTGTTTTTAGAATAAAACAAATGTGAGAAACACAATGGTGTAAAAATGCGATCTGGAAAATTTGTAGTTTTCGGAATGTTTTGATCGCAATTTTGAAAAACAGCTGAAAATTTACAAATCGCCTCGTGTWTGTCTAGAATATATTTTTAATTAGTATATATATATATATATATATATATATTAATCTGTGCAATCTAACACCACCTAAATCCCGAACGAAAAACCAACTGGAGACTGCGATGAAGAAAAGCATTGTGACGCAGACGATTCCCGATAGGCACACCAGCTTCCGCATTTTTCGACGAGATTTCACTTTTTGCTGGAAATTTTGTATGAATGACAGATTAAACGATATACTAGACTATATATTCGTCATAAAGGCTAAAGTATTTAGTCGGGAGATTAGGTACTCTTTGGTTTGTTCAAATTCCAGTCAGTTGAAATTATGACGACAATAAATGGATCTTTAGGTTCGGTTGAATATTCAAAGGGGACGAAAAGTAAATAATATTTTTGTTGAAAAGGCTTTTTTTGGTCAGCATGATAGGCGGTTTTTATATGCAAATCTTCCCGATGAAAAATGAGTTATCGGAAGTCATGAAATGAGTCATCGGAAGTTTATTTTATTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGAACATAAGGACATCTAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGGTGTTAGATTGCACAGATTA</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>CAGGAACATAAGGACATCTAAAATCATGCATGAGGAGTTTTTGTGAATTTGGGGTTTTTTGAGATCGCGAAAATTTTGACAAATTCGCTGGCGATTTGGTGTTTTTAGAATAAAACAAATGTGAGAAACACAATGGTGTAAAAATGCGATCTGGAAAATTTGTAGTTTTCGGAATGTTTTGATCGCAATTTTGAAAAACAGCTGAAAATTTACAAATCGCCTCGTGTTTGTCTAGAATATATTTTTAATTAGTATATATATATATATATATATATATATTAATCTGTGCAATCTAACACCA</canonical_amplicon>
		<polymorphic_amplicon>CAGGAACATAAGGACATCTAAAATCATGCATGAGGAGTTTTTGTGAATTTGGGGTTTTTTGAGATCGCGAAAATTTTGACAAATTCGCTGGCGATTTGGTGTTTTTAGAATAAAACAAATGTGAGAAACACAATGGTGTAAAAATGCGATCTGGAAAATTTGTAGTTTTCGGAATGTTTTGATCGCAATTTTGAAAAACAGCTGAAAATTTACAAATCGCCTCGTGTWTGTCTAGAATATATTTTTAATTAGTATATATATATATATATATATATATATTAATCTGTGCAATCTAACACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24067</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>533633</contig_pos>
        <strand>+</strand>
        <context>GTCTCTCAAT[A/C]TACTATCAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGTTCTCATTCGAGAACTCGTTTTGACTATCGTCCCAATGGTCTCTCAAT</left_flank>
        <right_flank>TACTATCAACGTTCCACTGATGACGTGGAAGAGGAAATGATGAGAATTCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGTTGATAGAGAAAAAATTGACCGAAAAAGTACAAAAATCGAGAAAATAAATCCGAAAAATAACAATATTTTTAGGTTACAATAGTTGTCGCTGTCGGACCATTTCTCTTTTCCGCAGCTCCAATTTTTTCGTACCAGAATAAAAGATGTTGCTCTTCTTAATTCAACGTCTTCTACAGTAACCAAGATTTTTCATCTTCTTATCCCTATTGTTAGATGGCCATTTTTGTTAGATGGCCCTGGCCATTCACGTAAAAGCCAACTGTTGATACGAATCAAAGCTGTCGACTCGAAATCAGTTTCTCATAAATTTCCGCGAAGAAAACCTGCAAAGCAAGAGATTTGCGATCGAGACCGTAAGTTTCTGCTCCCTCGACATCTTCTGATTTTCAAAATTTAAAACTTTCAGAATTCACTCGGAACAGAAAAATGAAATCGATTCCGAAACGTTCTCATTCGAGAACTCGTTTTGACTATCGTCCCAATGGTCTCTCAATCTACTATCAACGTTCCACTGATGACGTGGAAGAGGAAATGATGAGAATTCGTGTGGTTACCGATGGAAAACCAATCGACGACTCTCTCCGTTCTTCCGTTTCTTCACCACCTGAATCTTCTTCATGGACCACACTGGGATCCACGTCTTCTGTTAGCGGAACAAGTGATAAGACGAAGAAAAGAACGAAGAACAAGCACAGAAAACGGAAGAGTAAGAATAAGAACAAATCTTCGAAACATCAAAAACGAATGACATCTCGTCCAGTGATCCTTTCAAAGAAATGGAAGACGTGTTTGAGAAGAAAGAAGGAACCAGAAGGCATGGACAAGAAGTCGTTGCGAATTCTGGATGATTTGAAGATCTTGAACTTCAAGATCCGAGAAAAGTTTCAAATTCCAATGGACTGTGGTCATATAATGAGTGATTCTGGAACCATCCGAAACAGCATTCCATCGCAAGTCAAGCAATTTTAAGTACATTCAATAATATGTTTAATTCC</canonical>
            <polymorphic>TGTGTTGATAGAGAAAAAATTGACCGAAAAAGTACAAAAATCGAGAAAATAAATCCGAAAAATAACAATATTTTTAGGTTACAATAGTTGTCGCTGTCGGACCATTTCTCTTTTCCGCAGCTCCAATTTTTTCGTACCAGAATAAAAGATGTTGCTCTTCTTAATTCAACGTCTTCTACAGTAACCAAGATTTTTCATCTTCTTATCCCTATTGTTAGATGGCCATTTTTGTTAGATGGCCCTGGCCATTCACGTAAAAGCCAACTGTTGATACGAATCAAAGCTGTCGACTCGAAATCAGTTTCTCATAAATTTCCGCGAAGAAAACCTGCAAAGCAAGAGATTTGCGATCGAGACCGTAAGTTTCTGCTCCCTCGACATCTTCTGATTTTCAAAATTTAAAACTTTCAGAATTCACTCGGAACAGAAAAATGAAATCGATTCCGAAACGTTCTCATTCGAGAACTCGTTTTGACTATCGTCCCAATGGTCTCTCAATMTACTATCAACGTTCCACTGATGACGTGGAAGAGGAAATGATGAGAATTCGTGTGGTTACCGATGGAAAACCAATCGACGACTCTCTCCGTTCTTCCGTTTCTTCACCACCTGAATCTTCTTCATGGACCACACTGGGATCCACGTCTTCTGTTAGCGGAACAAGTGATAAGACGAAGAAAAGAACGAAGAACAAGCACAGAAAACGGAAGAGTAAGAATAAGAACAAATCTTCGAAACATCAAAAACGAATGACATCTCGTCCAGTGATCCTTTCAAAGAAATGGAAGACGTGTTTGAGAAGAAAGAAGGAACCAGAAGGCATGGACAAGAAGTCGTTGCGAATTCTGGATGATTTGAAGATCTTGAACTTCAAGATCCGAGAAAAGTTTCAAATTCCAATGGACTGTGGTCATATAATGAGTGATTCTGGAACCATCCGAAACAGCATTCCATCGCAAGTCAAGCAATTTTAAGTACATTCAATAATATGTTTAATTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGACATCTTCTGATTTTCA</pcr_primer_p1>
		<pcr_primer_p2>AAGAAGATTCAGGTGGTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTCGACATCTTCTGATTTTCAAAATTTAAAACTTTCAGAATTCACTCGGAACAGAAAAATGAAATCGATTCCGAAACGTTCTCATTCGAGAACTCGTTTTGACTATCGTCCCAATGGTCTCTCAATCTACTATCAACGTTCCACTGATGACGTGGAAGAGGAAATGATGAGAATTCGTGTGGTTACCGATGGAAAACCAATCGACGACTCTCTCCGTTCTTCCGTTTCTTCACCACCTGAATCTTCTT</canonical_amplicon>
		<polymorphic_amplicon>CTCGACATCTTCTGATTTTCAAAATTTAAAACTTTCAGAATTCACTCGGAACAGAAAAATGAAATCGATTCCGAAACGTTCTCATTCGAGAACTCGTTTTGACTATCGTCCCAATGGTCTCTCAATMTACTATCAACGTTCCACTGATGACGTGGAAGAGGAAATGATGAGAATTCGTGTGGTTACCGATGGAAAACCAATCGACGACTCTCTCCGTTCTTCCGTTTCTTCACCACCTGAATCTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24068</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>533729</contig_pos>
        <strand>+</strand>
        <context>TCCGTTCTTC[C/T]GTTTCTTCAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCGTGTGGTTACCGATGGAAAACCAATCGACGACTCTCTCCGTTCTTC</left_flank>
        <right_flank>GTTTCTTCACCACCTGAATCTTCTTCATGGACCACACTGGGATCCACGTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGACCATTTCTCTTTTCCGCAGCTCCAATTTTTTCGTACCAGAATAAAAGATGTTGCTCTTCTTAATTCAACGTCTTCTACAGTAACCAAGATTTTTCATCTTCTTATCCCTATTGTTAGATGGCCATTTTTGTTAGATGGCCCTGGCCATTCACGTAAAAGCCAACTGTTGATACGAATCAAAGCTGTCGACTCGAAATCAGTTTCTCATAAATTTCCGCGAAGAAAACCTGCAAAGCAAGAGATTTGCGATCGAGACCGTAAGTTTCTGCTCCCTCGACATCTTCTGATTTTCAAAATTTAAAACTTTCAGAATTCACTCGGAACAGAAAAATGAAATCGATTCCGAAACGTTCTCATTCGAGAACTCGTTTTGACTATCGTCCCAATGGTCTCTCAATCTACTATCAACGTTCCACTGATGACGTGGAAGAGGAAATGATGAGAATTCGTGTGGTTACCGATGGAAAACCAATCGACGACTCTCTCCGTTCTTCCGTTTCTTCACCACCTGAATCTTCTTCATGGACCACACTGGGATCCACGTCTTCTGTTAGCGGAACAAGTGATAAGACGAAGAAAAGAACGAAGAACAAGCACAGAAAACGGAAGAGTAAGAATAAGAACAAATCTTCGAAACATCAAAAACGAATGACATCTCGTCCAGTGATCCTTTCAAAGAAATGGAAGACGTGTTTGAGAAGAAAGAAGGAACCAGAAGGCATGGACAAGAAGTCGTTGCGAATTCTGGATGATTTGAAGATCTTGAACTTCAAGATCCGAGAAAAGTTTCAAATTCCAATGGACTGTGGTCATATAATGAGTGATTCTGGAACCATCCGAAACAGCATTCCATCGCAAGTCAAGCAATTTTAAGTACATTCAATAATATGTTTAATTCCAGAATCTCTCCTGATTCCTCTCCATCTCCATCCGACGTCACAAGAACTGCAGTTGAACGTAGCCATTCCATGTCACCGATTCTCACTGCAGAAGCT</canonical>
            <polymorphic>TCGGACCATTTCTCTTTTCCGCAGCTCCAATTTTTTCGTACCAGAATAAAAGATGTTGCTCTTCTTAATTCAACGTCTTCTACAGTAACCAAGATTTTTCATCTTCTTATCCCTATTGTTAGATGGCCATTTTTGTTAGATGGCCCTGGCCATTCACGTAAAAGCCAACTGTTGATACGAATCAAAGCTGTCGACTCGAAATCAGTTTCTCATAAATTTCCGCGAAGAAAACCTGCAAAGCAAGAGATTTGCGATCGAGACCGTAAGTTTCTGCTCCCTCGACATCTTCTGATTTTCAAAATTTAAAACTTTCAGAATTCACTCGGAACAGAAAAATGAAATCGATTCCGAAACGTTCTCATTCGAGAACTCGTTTTGACTATCGTCCCAATGGTCTCTCAATCTACTATCAACGTTCCACTGATGACGTGGAAGAGGAAATGATGAGAATTCGTGTGGTTACCGATGGAAAACCAATCGACGACTCTCTCCGTTCTTCYGTTTCTTCACCACCTGAATCTTCTTCATGGACCACACTGGGATCCACGTCTTCTGTTAGCGGAACAAGTGATAAGACGAAGAAAAGAACGAAGAACAAGCACAGAAAACGGAAGAGTAAGAATAAGAACAAATCTTCGAAACATCAAAAACGAATGACATCTCGTCCAGTGATCCTTTCAAAGAAATGGAAGACGTGTTTGAGAAGAAAGAAGGAACCAGAAGGCATGGACAAGAAGTCGTTGCGAATTCTGGATGATTTGAAGATCTTGAACTTCAAGATCCGAGAAAAGTTTCAAATTCCAATGGACTGTGGTCATATAATGAGTGATTCTGGAACCATCCGAAACAGCATTCCATCGCAAGTCAAGCAATTTTAAGTACATTCAATAATATGTTTAATTCCAGAATCTCTCCTGATTCCTCTCCATCTCCATCCGACGTCACAAGAACTGCAGTTGAACGTAGCCATTCCATGTCACCGATTCTCACTGCAGAAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTATCAACGTTCCACTGATG</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTGATGTTTCGAAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TACTATCAACGTTCCACTGATGACGTGGAAGAGGAAATGATGAGAATTCGTGTGGTTACCGATGGAAAACCAATCGACGACTCTCTCCGTTCTTCCGTTTCTTCACCACCTGAATCTTCTTCATGGACCACACTGGGATCCACGTCTTCTGTTAGCGGAACAAGTGATAAGACGAAGAAAAGAACGAAGAACAAGCACAGAAAACGGAAGAGTAAGAATAAGAACAAATCTTCGAAACATCAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TACTATCAACGTTCCACTGATGACGTGGAAGAGGAAATGATGAGAATTCGTGTGGTTACCGATGGAAAACCAATCGACGACTCTCTCCGTTCTTCYGTTTCTTCACCACCTGAATCTTCTTCATGGACCACACTGGGATCCACGTCTTCTGTTAGCGGAACAAGTGATAAGACGAAGAAAAGAACGAAGAACAAGCACAGAAAACGGAAGAGTAAGAATAAGAACAAATCTTCGAAACATCAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24069</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>533855</contig_pos>
        <strand>+</strand>
        <context>GTAAGAATAA[A/G]AACAAATCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGAAGAAAAGAACGAAGAACAAGCACAGAAAACGGAAGAGTAAGAATAA</left_flank>
        <right_flank>AACAAATCTTCGAAACATCAAAAACGAATGACATCTCGTCCAGTGATCCT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATTTTTGTTAGATGGCCCTGGCCATTCACGTAAAAGCCAACTGTTGATACGAATCAAAGCTGTCGACTCGAAATCAGTTTCTCATAAATTTCCGCGAAGAAAACCTGCAAAGCAAGAGATTTGCGATCGAGACCGTAAGTTTCTGCTCCCTCGACATCTTCTGATTTTCAAAATTTAAAACTTTCAGAATTCACTCGGAACAGAAAAATGAAATCGATTCCGAAACGTTCTCATTCGAGAACTCGTTTTGACTATCGTCCCAATGGTCTCTCAATCTACTATCAACGTTCCACTGATGACGTGGAAGAGGAAATGATGAGAATTCGTGTGGTTACCGATGGAAAACCAATCGACGACTCTCTCCGTTCTTCCGTTTCTTCACCACCTGAATCTTCTTCATGGACCACACTGGGATCCACGTCTTCTGTTAGCGGAACAAGTGATAAGACGAAGAAAAGAACGAAGAACAAGCACAGAAAACGGAAGAGTAAGAATAAGAACAAATCTTCGAAACATCAAAAACGAATGACATCTCGTCCAGTGATCCTTTCAAAGAAATGGAAGACGTGTTTGAGAAGAAAGAAGGAACCAGAAGGCATGGACAAGAAGTCGTTGCGAATTCTGGATGATTTGAAGATCTTGAACTTCAAGATCCGAGAAAAGTTTCAAATTCCAATGGACTGTGGTCATATAATGAGTGATTCTGGAACCATCCGAAACAGCATTCCATCGCAAGTCAAGCAATTTTAAGTACATTCAATAATATGTTTAATTCCAGAATCTCTCCTGATTCCTCTCCATCTCCATCCGACGTCACAAGAACTGCAGTTGAACGTAGCCATTCCATGTCACCGATTCTCACTGCAGAAGCTTTTGATTATCGTGGACGTCCTCTGAAACCTTCTCTTGCAATCACTCCATTCCCTGGGGCTCGATCTGTGGAGACTAGAAAAAAGGTCAGAGAGTTTCTTCTTGGAGTTGGAAAAGATAAGGAAAAG</canonical>
            <polymorphic>CCATTTTTGTTAGATGGCCCTGGCCATTCACGTAAAAGCCAACTGTTGATACGAATCAAAGCTGTCGACTCGAAATCAGTTTCTCATAAATTTCCGCGAAGAAAACCTGCAAAGCAAGAGATTTGCGATCGAGACCGTAAGTTTCTGCTCCCTCGACATCTTCTGATTTTCAAAATTTAAAACTTTCAGAATTCACTCGGAACAGAAAAATGAAATCGATTCCGAAACGTTCTCATTCGAGAACTCGTTTTGACTATCGTCCCAATGGTCTCTCAATCTACTATCAACGTTCCACTGATGACGTGGAAGAGGAAATGATGAGAATTCGTGTGGTTACCGATGGAAAACCAATCGACGACTCTCTCCGTTCTTCCGTTTCTTCACCACCTGAATCTTCTTCATGGACCACACTGGGATCCACGTCTTCTGTTAGCGGAACAAGTGATAAGACGAAGAAAAGAACGAAGAACAAGCACAGAAAACGGAAGAGTAAGAATAARAACAAATCTTCGAAACATCAAAAACGAATGACATCTCGTCCAGTGATCCTTTCAAAGAAATGGAAGACGTGTTTGAGAAGAAAGAAGGAACCAGAAGGCATGGACAAGAAGTCGTTGCGAATTCTGGATGATTTGAAGATCTTGAACTTCAAGATCCGAGAAAAGTTTCAAATTCCAATGGACTGTGGTCATATAATGAGTGATTCTGGAACCATCCGAAACAGCATTCCATCGCAAGTCAAGCAATTTTAAGTACATTCAATAATATGTTTAATTCCAGAATCTCTCCTGATTCCTCTCCATCTCCATCCGACGTCACAAGAACTGCAGTTGAACGTAGCCATTCCATGTCACCGATTCTCACTGCAGAAGCTTTTGATTATCGTGGACGTCCTCTGAAACCTTCTCTTGCAATCACTCCATTCCCTGGGGCTCGATCTGTGGAGACTAGAAAAAAGGTCAGAGAGTTTCTTCTTGGAGTTGGAAAAGATAAGGAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGAAGAAAAGAACGAAGAAC</pcr_primer_p1>
		<pcr_primer_p2>CTCATTATATGACCACAGTCCA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACGAAGAAAAGAACGAAGAACAAGCACAGAAAACGGAAGAGTAAGAATAAGAACAAATCTTCGAAACATCAAAAACGAATGACATCTCGTCCAGTGATCCTTTCAAAGAAATGGAAGACGTGTTTGAGAAGAAAGAAGGAACCAGAAGGCATGGACAAGAAGTCGTTGCGAATTCTGGATGATTTGAAGATCTTGAACTTCAAGATCCGAGAAAAGTTTCAAATTCCAATGGACTGTGGTCATATAATGAG</canonical_amplicon>
		<polymorphic_amplicon>ACGAAGAAAAGAACGAAGAACAAGCACAGAAAACGGAAGAGTAAGAATAARAACAAATCTTCGAAACATCAAAAACGAATGACATCTCGTCCAGTGATCCTTTCAAAGAAATGGAAGACGTGTTTGAGAAGAAAGAAGGAACCAGAAGGCATGGACAAGAAGTCGTTGCGAATTCTGGATGATTTGAAGATCTTGAACTTCAAGATCCGAGAAAAGTTTCAAATTCCAATGGACTGTGGTCATATAATGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24070</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>541641</contig_pos>
        <strand>+</strand>
        <context>GACAGTAGGG[A/G]AGGGATGATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTTTCAGACAGGACGAGATGTAAGTGATTTATAAAGGTGACAGTAGGG</left_flank>
        <right_flank>AGGGATGATGTCAGCGGATGGGATCAAAAATATCCCGTTGAACGAAAAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTCAGGAAAGTTTTTGTCAGCTCTTCATATTTCAATTTTAAACAGGAATCAGTTTTTTTCAAAATCTAAGTCTAACAAAAATCTCGGATTCCTGTCCAGGTTTGAACTTCCGAGAAGCCGAGAAACAGTCACTTGAAATTTTGGAAAGTATAACTTTAGCTCACCATCACTGGACGGAAACCTTTTGATCGGTGCAAAAACAGATCCGAGAGCCAAAGCAGCCGTTACACAAGCCAATATTCCGACAATCATTTTTCTGAAACTGCACGACTGTAATTCCGCTGAAACTATGATTATATAGAACTGAAAAACTAGGCGGAAAATTGAATCGGAAACACAGTTCAAAGGGTTTGAGGACAACTTTGCATAAATAACTCTTATACAGGGAGCGGTACGGTAGGACACAGAAATCATGAAAACACGAAACTAGTTGAACGCATTGAACACTTTTTCAGACAGGACGAGATGTAAGTGATTTATAAAGGTGACAGTAGGGAAGGGATGATGTCAGCGGATGGGATCAAAAATATCCCGTTGAACGAAAAGGACCACATCAGAGAACGTTTCGAGGGAAAGTATCCGAAATATATCAGATTCAAAGTTTTAAACCTTTTAACAGTATTTTCTTATACTGAAGATTTCAGACAAGTGTTTTCAAAATTCTGTAAAACTTGTAACAGAAGGGCCTTAAAATTTGAACTAATTTATCTCGGTTCCTATCAAACGCATTTGACGCATTTTTGATATCTTGCATAGAAATTGAGATAATTGAGCTTATACTTGACAGTGTGGAGCCCTTCTATTACAAAAGTTTTTTCAAGCTTTACTAGATATTTTGCTGCTTCAGGACAATCTGACACAAATAACAACTTTAAGGGGATCTGGAAAAACTTTAAAGGAAATAGTTTCGATCTTTTATGGCAATTATCTCAAACTTTTCGGCTGTTTTGACCGGAATTATCGCCTTTTCCAATTTTTTCTGTCCACCTCGCACATA</canonical>
            <polymorphic>GTTTTCAGGAAAGTTTTTGTCAGCTCTTCATATTTCAATTTTAAACAGGAATCAGTTTTTTTCAAAATCTAAGTCTAACAAAAATCTCGGATTCCTGTCCAGGTTTGAACTTCCGAGAAGCCGAGAAACAGTCACTTGAAATTTTGGAAAGTATAACTTTAGCTCACCATCACTGGACGGAAACCTTTTGATCGGTGCAAAAACAGATCCGAGAGCCAAAGCAGCCGTTACACAAGCCAATATTCCGACAATCATTTTTCTGAAACTGCACGACTGTAATTCCGCTGAAACTATGATTATATAGAACTGAAAAACTAGGCGGAAAATTGAATCGGAAACACAGTTCAAAGGGTTTGAGGACAACTTTGCATAAATAACTCTTATACAGGGAGCGGTACGGTAGGACACAGAAATCATGAAAACACGAAACTAGTTGAACGCATTGAACACTTTTTCAGACAGGACGAGATGTAAGTGATTTATAAAGGTGACAGTAGGGRAGGGATGATGTCAGCGGATGGGATCAAAAATATCCCGTTGAACGAAAAGGACCACATCAGAGAACGTTTCGAGGGAAAGTATCCGAAATATATCAGATTCAAAGTTTTAAACCTTTTAACAGTATTTTCTTATACTGAAGATTTCAGACAAGTGTTTTCAAAATTCTGTAAAACTTGTAACAGAAGGGCCTTAAAATTTGAACTAATTTATCTCGGTTCCTATCAAACGCATTTGACGCATTTTTGATATCTTGCATAGAAATTGAGATAATTGAGCTTATACTTGACAGTGTGGAGCCCTTCTATTACAAAAGTTTTTTCAAGCTTTACTAGATATTTTGCTGCTTCAGGACAATCTGACACAAATAACAACTTTAAGGGGATCTGGAAAAACTTTAAAGGAAATAGTTTCGATCTTTTATGGCAATTATCTCAAACTTTTCGGCTGTTTTGACCGGAATTATCGCCTTTTCCAATTTTTTCTGTCCACCTCGCACATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAAAACACGAAACTAGTTGAA</pcr_primer_p1>
		<pcr_primer_p2>AATTTTGAAAACACTTGTCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGAAAACACGAAACTAGTTGAACGCATTGAACACTTTTTCAGACAGGACGAGATGTAAGTGATTTATAAAGGTGACAGTAGGGAAGGGATGATGTCAGCGGATGGGATCAAAAATATCCCGTTGAACGAAAAGGACCACATCAGAGAACGTTTCGAGGGAAAGTATCCGAAATATATCAGATTCAAAGTTTTAAACCTTTTAACAGTATTTTCTTATACTGAAGATTTCAGACAAGTGTTTTCAAAATT</canonical_amplicon>
		<polymorphic_amplicon>ATGAAAACACGAAACTAGTTGAACGCATTGAACACTTTTTCAGACAGGACGAGATGTAAGTGATTTATAAAGGTGACAGTAGGGRAGGGATGATGTCAGCGGATGGGATCAAAAATATCCCGTTGAACGAAAAGGACCACATCAGAGAACGTTTCGAGGGAAAGTATCCGAAATATATCAGATTCAAAGTTTTAAACCTTTTAACAGTATTTTCTTATACTGAAGATTTCAGACAAGTGTTTTCAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24071</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>561144</contig_pos>
        <strand></strand>
        <context>atatatcccg[G/T]ttcctgtaac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTAATATAAGACCACGATATATTACTTGTACTTTGATCTCATATATCCCG</left_flank>
        <right_flank>TTCCTGTAACAGGTATCAAAAGTGATCAACCGACAAAATGTTTATCAAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTCCAAAATCTTTTTAAGAACGAAGTTCTGGGAACGGTACTCTGCGAGCAATTATGACCCAGAAAATCTATAGTCAAATATTTTTTGCTTTCAGTATTTATTCTATTTTTCAGATTATTTTTTGTTTCGCTTCCAGATTTTCTACAGAGATTACTGTAATTCCATAGCGCTCTTGCCTTACTGATTTTTTTTTCACAATTTTTTCCTTCAATTCCCGCGATGTTTCTCGGTATTAAGACACCTTTTCGCTTTGCATTCAAAAATCTGAATCAACTGCAATTTTAATTTTTCAGGAAGCTCAAATCGTAACTGCATGTGAAGTCGGCAATCGAAGTTCGGGGTAGTCTAGAAGCAGGTAGAGTGAGTTATTTAGTTTCAATACTTGAATTTCGTATTAATTTTCGCCGTTTTGCACCTCTTATTAGTTCCATTTACCGTAAACACTGTAATATAAGACCACGATATATTACTTGTACTTTGATCTCATATATCCCGGTTCCTGTAACAGGTATCAAAAGTGATCAACCGACAAAATGTTTATCAAAATACCAACAAGATTTTATTAGTTGACACATTTTTCATATCTCTTTTAGAAATTGAGATAATTGAGCTCAAAGTCCAAGTGTAGGGTCGCCTTCTATTAGAGTGTTTACGGTAGTTACAGTGACCAATAATCCTTCTCTTCTGTATATTTACCTCCATGATCGCCTGAATCTCGGAATTTCCATAATTTTTTCAGGTTTTTCAACTGTCCATTGACCGCTCATGATGACATTTTTCAGAGAAAAGGTGGATCCGTTTCCGTTTTGTCTCATTTACCCACACAAAATGTTTATTTCAAACGGAAATGTTTGAAATTTGAGAAGTAGGCGGGGCGAGCTTTCAGTCTCTGCAGGTTATTTCATAACTTTTGATTCAGTGACACTCCCTTTCATGAGTTTGTACCGGAATCTGACAGATTTCACTGAAGAATTTTTCTGATTTCTCGTACAAAAT</canonical>
            <polymorphic>AATTTTCCAAAATCTTTTTAAGAACGAAGTTCTGGGAACGGTACTCTGCGAGCAATTATGACCCAGAAAATCTATAGTCAAATATTTTTTGCTTTCAGTATTTATTCTATTTTTCAGATTATTTTTTGTTTCGCTTCCAGATTTTCTACAGAGATTACTGTAATTCCATAGCGCTCTTGCCTTACTGATTTTTTTTTCACAATTTTTTCCTTCAATTCCCGCGATGTTTCTCGGTATTAAGACACCTTTTCGCTTTGCATTCAAAAATCTGAATCAACTGCAATTTTAATTTTTCAGGAAGCTCAAATCGTAACTGCATGTGAAGTCGGCAATCGAAGTTCGGGGTAGTCTAGAAGCAGGTAGAGTGAGTTATTTAGTTTCAATACTTGAATTTCGTATTAATTTTCGCCGTTTTGCACCTCTTATTAGTTCCATTTACCGTAAACACTGTAATATAAGACCACGATATATTACTTGTACTTTGATCTCATATATCCCGKTTCCTGTAACAGGTATCAAAAGTGATCAACCGACAAAATGTTTATCAAAATACCAACAAGATTTTATTAGTTGACACATTTTTCATATCTCTTTTAGAAATTGAGATAATTGAGCTCAAAGTCCAAGTGTAGGGTCGCCTTCTATTAGAGTGTTTACGGTAGTTACAGTGACCAATAATCCTTCTCTTCTGTATATTTACCTCCATGATCGCCTGAATCTCGGAATTTCCATAATTTTTTCAGGTTTTTCAACTGTCCATTGACCGCTCATGATGACATTTTTCAGAGAAAAGGTGGATCCGTTTCCGTTTTGTCTCATTTACCCACACAAAATGTTTATTTCAAACGGAAATGTTTGAAATTTGAGAAGTAGGCGGGGCGAGCTTTCAGTCTCTGCAGGTTATTTCATAACTTTTGATTCAGTGACACTCCCTTTCATGAGTTTGTACCGGAATCTGACAGATTTCACTGAAGAATTTTTCTGATTTCTCGTACAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>501 297 202</canonical_bands>
                <polymorphic_bands>798 202</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>497 452 51</canonical_bands>
                <polymorphic_bands>949 51</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTAATTTTCGCCGTTTTG</pcr_primer_p1>
		<pcr_primer_p2>AGAAGGATTATTGGTCACTGTAA</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>TATTAATTTTCGCCGTTTTGCACCTCTTATTAGTTCCATTTACCGTAAACACTGTAATATAAGACCACGATATATTACTTGTACTTTGATCTCATATATCCCGGTTCCTGTAACAGGTATCAAAAGTGATCAACCGACAAAATGTTTATCAAAATACCAACAAGATTTTATTAGTTGACACATTTTTCATATCTCTTTTAGAAATTGAGATAATTGAGCTCAAAGTCCAAGTGTAGGGTCGCCTTCTATTAGAGTGTTTACGGTAGTTACAGTGACCAATAATCCTTCT</canonical_amplicon>
		<polymorphic_amplicon>TATTAATTTTCGCCGTTTTGCACCTCTTATTAGTTCCATTTACCGTAAACACTGTAATATAAGACCACGATATATTACTTGTACTTTGATCTCATATATCCCGKTTCCTGTAACAGGTATCAAAAGTGATCAACCGACAAAATGTTTATCAAAATACCAACAAGATTTTATTAGTTGACACATTTTTCATATCTCTTTTAGAAATTGAGATAATTGAGCTCAAAGTCCAAGTGTAGGGTCGCCTTCTATTAGAGTGTTTACGGTAGTTACAGTGACCAATAATCCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24072</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>561192</contig_pos>
        <strand></strand>
        <context>atgtttatca[A/T]aataccaaca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGGTTCCTGTAACAGGTATCAAAAGTGATCAACCGACAAAATGTTTATCA</left_flank>
        <right_flank>AATACCAACAAGATTTTATTAGTTGACACATTTTTCATATCTCTTTTAGA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGCAATTATGACCCAGAAAATCTATAGTCAAATATTTTTTGCTTTCAGTATTTATTCTATTTTTCAGATTATTTTTTGTTTCGCTTCCAGATTTTCTACAGAGATTACTGTAATTCCATAGCGCTCTTGCCTTACTGATTTTTTTTTCACAATTTTTTCCTTCAATTCCCGCGATGTTTCTCGGTATTAAGACACCTTTTCGCTTTGCATTCAAAAATCTGAATCAACTGCAATTTTAATTTTTCAGGAAGCTCAAATCGTAACTGCATGTGAAGTCGGCAATCGAAGTTCGGGGTAGTCTAGAAGCAGGTAGAGTGAGTTATTTAGTTTCAATACTTGAATTTCGTATTAATTTTCGCCGTTTTGCACCTCTTATTAGTTCCATTTACCGTAAACACTGTAATATAAGACCACGATATATTACTTGTACTTTGATCTCATATATCCCGGTTCCTGTAACAGGTATCAAAAGTGATCAACCGACAAAATGTTTATCAAAATACCAACAAGATTTTATTAGTTGACACATTTTTCATATCTCTTTTAGAAATTGAGATAATTGAGCTCAAAGTCCAAGTGTAGGGTCGCCTTCTATTAGAGTGTTTACGGTAGTTACAGTGACCAATAATCCTTCTCTTCTGTATATTTACCTCCATGATCGCCTGAATCTCGGAATTTCCATAATTTTTTCAGGTTTTTCAACTGTCCATTGACCGCTCATGATGACATTTTTCAGAGAAAAGGTGGATCCGTTTCCGTTTTGTCTCATTTACCCACACAAAATGTTTATTTCAAACGGAAATGTTTGAAATTTGAGAAGTAGGCGGGGCGAGCTTTCAGTCTCTGCAGGTTATTTCATAACTTTTGATTCAGTGACACTCCCTTTCATGAGTTTGTACCGGAATCTGACAGATTTCACTGAAGAATTTTTCTGATTTCTCGTACAAAATATTGTATTAGTCAACCACTTGTTTGTCACCGATTTTGTTTCATTACAG</canonical>
            <polymorphic>CGAGCAATTATGACCCAGAAAATCTATAGTCAAATATTTTTTGCTTTCAGTATTTATTCTATTTTTCAGATTATTTTTTGTTTCGCTTCCAGATTTTCTACAGAGATTACTGTAATTCCATAGCGCTCTTGCCTTACTGATTTTTTTTTCACAATTTTTTCCTTCAATTCCCGCGATGTTTCTCGGTATTAAGACACCTTTTCGCTTTGCATTCAAAAATCTGAATCAACTGCAATTTTAATTTTTCAGGAAGCTCAAATCGTAACTGCATGTGAAGTCGGCAATCGAAGTTCGGGGTAGTCTAGAAGCAGGTAGAGTGAGTTATTTAGTTTCAATACTTGAATTTCGTATTAATTTTCGCCGTTTTGCACCTCTTATTAGTTCCATTTACCGTAAACACTGTAATATAAGACCACGATATATTACTTGTACTTTGATCTCATATATCCCGGTTCCTGTAACAGGTATCAAAAGTGATCAACCGACAAAATGTTTATCAWAATACCAACAAGATTTTATTAGTTGACACATTTTTCATATCTCTTTTAGAAATTGAGATAATTGAGCTCAAAGTCCAAGTGTAGGGTCGCCTTCTATTAGAGTGTTTACGGTAGTTACAGTGACCAATAATCCTTCTCTTCTGTATATTTACCTCCATGATCGCCTGAATCTCGGAATTTCCATAATTTTTTCAGGTTTTTCAACTGTCCATTGACCGCTCATGATGACATTTTTCAGAGAAAAGGTGGATCCGTTTCCGTTTTGTCTCATTTACCCACACAAAATGTTTATTTCAAACGGAAATGTTTGAAATTTGAGAAGTAGGCGGGGCGAGCTTTCAGTCTCTGCAGGTTATTTCATAACTTTTGATTCAGTGACACTCCCTTTCATGAGTTTGTACCGGAATCTGACAGATTTCACTGAAGAATTTTTCTGATTTCTCGTACAAAATATTGTATTAGTCAACCACTTGTTTGTCACCGATTTTGTTTCATTACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTAATTTTCGCCGTTTTG</pcr_primer_p1>
		<pcr_primer_p2>AGAAGGATTATTGGTCACTGTAA</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>TATTAATTTTCGCCGTTTTGCACCTCTTATTAGTTCCATTTACCGTAAACACTGTAATATAAGACCACGATATATTACTTGTACTTTGATCTCATATATCCCGGTTCCTGTAACAGGTATCAAAAGTGATCAACCGACAAAATGTTTATCAAAATACCAACAAGATTTTATTAGTTGACACATTTTTCATATCTCTTTTAGAAATTGAGATAATTGAGCTCAAAGTCCAAGTGTAGGGTCGCCTTCTATTAGAGTGTTTACGGTAGTTACAGTGACCAATAATCCTTCT</canonical_amplicon>
		<polymorphic_amplicon>TATTAATTTTCGCCGTTTTGCACCTCTTATTAGTTCCATTTACCGTAAACACTGTAATATAAGACCACGATATATTACTTGTACTTTGATCTCATATATCCCGGTTCCTGTAACAGGTATCAAAAGTGATCAACCGACAAAATGTTTATCAWAATACCAACAAGATTTTATTAGTTGACACATTTTTCATATCTCTTTTAGAAATTGAGATAATTGAGCTCAAAGTCCAAGTGTAGGGTCGCCTTCTATTAGAGTGTTTACGGTAGTTACAGTGACCAATAATCCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24073</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>561257</contig_pos>
        <strand></strand>
        <context>gagataattg[A/G]gctcaaagtc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTATTAGTTGACACATTTTTCATATCTCTTTTAGAAATTGAGATAATTG</left_flank>
        <right_flank>GCTCAAAGTCCAAGTGTAGGGTCGCCTTCTATTAGAGTGTTTACGGTAGT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGATTATTTTTTGTTTCGCTTCCAGATTTTCTACAGAGATTACTGTAATTCCATAGCGCTCTTGCCTTACTGATTTTTTTTTCACAATTTTTTCCTTCAATTCCCGCGATGTTTCTCGGTATTAAGACACCTTTTCGCTTTGCATTCAAAAATCTGAATCAACTGCAATTTTAATTTTTCAGGAAGCTCAAATCGTAACTGCATGTGAAGTCGGCAATCGAAGTTCGGGGTAGTCTAGAAGCAGGTAGAGTGAGTTATTTAGTTTCAATACTTGAATTTCGTATTAATTTTCGCCGTTTTGCACCTCTTATTAGTTCCATTTACCGTAAACACTGTAATATAAGACCACGATATATTACTTGTACTTTGATCTCATATATCCCGGTTCCTGTAACAGGTATCAAAAGTGATCAACCGACAAAATGTTTATCAAAATACCAACAAGATTTTATTAGTTGACACATTTTTCATATCTCTTTTAGAAATTGAGATAATTGAGCTCAAAGTCCAAGTGTAGGGTCGCCTTCTATTAGAGTGTTTACGGTAGTTACAGTGACCAATAATCCTTCTCTTCTGTATATTTACCTCCATGATCGCCTGAATCTCGGAATTTCCATAATTTTTTCAGGTTTTTCAACTGTCCATTGACCGCTCATGATGACATTTTTCAGAGAAAAGGTGGATCCGTTTCCGTTTTGTCTCATTTACCCACACAAAATGTTTATTTCAAACGGAAATGTTTGAAATTTGAGAAGTAGGCGGGGCGAGCTTTCAGTCTCTGCAGGTTATTTCATAACTTTTGATTCAGTGACACTCCCTTTCATGAGTTTGTACCGGAATCTGACAGATTTCACTGAAGAATTTTTCTGATTTCTCGTACAAAATATTGTATTAGTCAACCACTTGTTTGTCACCGATTTTGTTTCATTACAGGTGTCTGTTGGTATATTTATTAAATATCGAAGACCACATTTCCCTTCATAACAAAACCAACCGAA</canonical>
            <polymorphic>TCAGATTATTTTTTGTTTCGCTTCCAGATTTTCTACAGAGATTACTGTAATTCCATAGCGCTCTTGCCTTACTGATTTTTTTTTCACAATTTTTTCCTTCAATTCCCGCGATGTTTCTCGGTATTAAGACACCTTTTCGCTTTGCATTCAAAAATCTGAATCAACTGCAATTTTAATTTTTCAGGAAGCTCAAATCGTAACTGCATGTGAAGTCGGCAATCGAAGTTCGGGGTAGTCTAGAAGCAGGTAGAGTGAGTTATTTAGTTTCAATACTTGAATTTCGTATTAATTTTCGCCGTTTTGCACCTCTTATTAGTTCCATTTACCGTAAACACTGTAATATAAGACCACGATATATTACTTGTACTTTGATCTCATATATCCCGGTTCCTGTAACAGGTATCAAAAGTGATCAACCGACAAAATGTTTATCAAAATACCAACAAGATTTTATTAGTTGACACATTTTTCATATCTCTTTTAGAAATTGAGATAATTGRGCTCAAAGTCCAAGTGTAGGGTCGCCTTCTATTAGAGTGTTTACGGTAGTTACAGTGACCAATAATCCTTCTCTTCTGTATATTTACCTCCATGATCGCCTGAATCTCGGAATTTCCATAATTTTTTCAGGTTTTTCAACTGTCCATTGACCGCTCATGATGACATTTTTCAGAGAAAAGGTGGATCCGTTTCCGTTTTGTCTCATTTACCCACACAAAATGTTTATTTCAAACGGAAATGTTTGAAATTTGAGAAGTAGGCGGGGCGAGCTTTCAGTCTCTGCAGGTTATTTCATAACTTTTGATTCAGTGACACTCCCTTTCATGAGTTTGTACCGGAATCTGACAGATTTCACTGAAGAATTTTTCTGATTTCTCGTACAAAATATTGTATTAGTCAACCACTTGTTTGTCACCGATTTTGTTTCATTACAGGTGTCTGTTGGTATATTTATTAAATATCGAAGACCACATTTCCCTTCATAACAAAACCAACCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>313 269 230 188</canonical_bands>
                <polymorphic_bands>582 230 188</polymorphic_bands>
            </assay>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>313 269 230 188</canonical_bands>
                <polymorphic_bands>582 230 188</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTAATTTTCGCCGTTTTG</pcr_primer_p1>
		<pcr_primer_p2>AGAAGGATTATTGGTCACTGTAA</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>TATTAATTTTCGCCGTTTTGCACCTCTTATTAGTTCCATTTACCGTAAACACTGTAATATAAGACCACGATATATTACTTGTACTTTGATCTCATATATCCCGGTTCCTGTAACAGGTATCAAAAGTGATCAACCGACAAAATGTTTATCAAAATACCAACAAGATTTTATTAGTTGACACATTTTTCATATCTCTTTTAGAAATTGAGATAATTGAGCTCAAAGTCCAAGTGTAGGGTCGCCTTCTATTAGAGTGTTTACGGTAGTTACAGTGACCAATAATCCTTCT</canonical_amplicon>
		<polymorphic_amplicon>TATTAATTTTCGCCGTTTTGCACCTCTTATTAGTTCCATTTACCGTAAACACTGTAATATAAGACCACGATATATTACTTGTACTTTGATCTCATATATCCCGGTTCCTGTAACAGGTATCAAAAGTGATCAACCGACAAAATGTTTATCAAAATACCAACAAGATTTTATTAGTTGACACATTTTTCATATCTCTTTTAGAAATTGAGATAATTGRGCTCAAAGTCCAAGTGTAGGGTCGCCTTCTATTAGAGTGTTTACGGTAGTTACAGTGACCAATAATCCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24074</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>561361</contig_pos>
        <strand></strand>
        <context>GATCGCCTGA[A/C]TCTCGGAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTGACCAATAATCCTTCTCTTCTGTATATTTACCTCCATGATCGCCTGA</left_flank>
        <right_flank>TCTCGGAATTTCCATAATTTTTTCAGGTTTTTCAACTGTCCATTGACCGC</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCGCGATGTTTCTCGGTATTAAGACACCTTTTCGCTTTGCATTCAAAAATCTGAATCAACTGCAATTTTAATTTTTCAGGAAGCTCAAATCGTAACTGCATGTGAAGTCGGCAATCGAAGTTCGGGGTAGTCTAGAAGCAGGTAGAGTGAGTTATTTAGTTTCAATACTTGAATTTCGTATTAATTTTCGCCGTTTTGCACCTCTTATTAGTTCCATTTACCGTAAACACTGTAATATAAGACCACGATATATTACTTGTACTTTGATCTCATATATCCCGGTTCCTGTAACAGGTATCAAAAGTGATCAACCGACAAAATGTTTATCAAAATACCAACAAGATTTTATTAGTTGACACATTTTTCATATCTCTTTTAGAAATTGAGATAATTGAGCTCAAAGTCCAAGTGTAGGGTCGCCTTCTATTAGAGTGTTTACGGTAGTTACAGTGACCAATAATCCTTCTCTTCTGTATATTTACCTCCATGATCGCCTGAATCTCGGAATTTCCATAATTTTTTCAGGTTTTTCAACTGTCCATTGACCGCTCATGATGACATTTTTCAGAGAAAAGGTGGATCCGTTTCCGTTTTGTCTCATTTACCCACACAAAATGTTTATTTCAAACGGAAATGTTTGAAATTTGAGAAGTAGGCGGGGCGAGCTTTCAGTCTCTGCAGGTTATTTCATAACTTTTGATTCAGTGACACTCCCTTTCATGAGTTTGTACCGGAATCTGACAGATTTCACTGAAGAATTTTTCTGATTTCTCGTACAAAATATTGTATTAGTCAACCACTTGTTTGTCACCGATTTTGTTTCATTACAGGTGTCTGTTGGTATATTTATTAAATATCGAAGACCACATTTCCCTTCATAACAAAACCAACCGAATAGAATAACAATCGCCTTGGAAGCTTATATCTCCACTTTGCTCAACACCTCTTCTTTCTCTGCGTCTCTCCTATTTTCTCTGTAGACAGTCAGACTCTAACCGT</canonical>
            <polymorphic>CCCGCGATGTTTCTCGGTATTAAGACACCTTTTCGCTTTGCATTCAAAAATCTGAATCAACTGCAATTTTAATTTTTCAGGAAGCTCAAATCGTAACTGCATGTGAAGTCGGCAATCGAAGTTCGGGGTAGTCTAGAAGCAGGTAGAGTGAGTTATTTAGTTTCAATACTTGAATTTCGTATTAATTTTCGCCGTTTTGCACCTCTTATTAGTTCCATTTACCGTAAACACTGTAATATAAGACCACGATATATTACTTGTACTTTGATCTCATATATCCCGGTTCCTGTAACAGGTATCAAAAGTGATCAACCGACAAAATGTTTATCAAAATACCAACAAGATTTTATTAGTTGACACATTTTTCATATCTCTTTTAGAAATTGAGATAATTGAGCTCAAAGTCCAAGTGTAGGGTCGCCTTCTATTAGAGTGTTTACGGTAGTTACAGTGACCAATAATCCTTCTCTTCTGTATATTTACCTCCATGATCGCCTGAMTCTCGGAATTTCCATAATTTTTTCAGGTTTTTCAACTGTCCATTGACCGCTCATGATGACATTTTTCAGAGAAAAGGTGGATCCGTTTCCGTTTTGTCTCATTTACCCACACAAAATGTTTATTTCAAACGGAAATGTTTGAAATTTGAGAAGTAGGCGGGGCGAGCTTTCAGTCTCTGCAGGTTATTTCATAACTTTTGATTCAGTGACACTCCCTTTCATGAGTTTGTACCGGAATCTGACAGATTTCACTGAAGAATTTTTCTGATTTCTCGTACAAAATATTGTATTAGTCAACCACTTGTTTGTCACCGATTTTGTTTCATTACAGGTGTCTGTTGGTATATTTATTAAATATCGAAGACCACATTTCCCTTCATAACAAAACCAACCGAATAGAATAACAATCGCCTTGGAAGCTTATATCTCCACTTTGCTCAACACCTCTTCTTTCTCTGCGTCTCTCCTATTTTCTCTGTAGACAGTCAGACTCTAACCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>444 265 202 54 35</canonical_bands>
                <polymorphic_bands>646 265 54 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACAGTGACCAATAATCCTTCTC</pcr_primer_p1>
		<pcr_primer_p2>GTTATGAAATAACCTGCAGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TACAGTGACCAATAATCCTTCTCTTCTGTATATTTACCTCCATGATCGCCTGAATCTCGGAATTTCCATAATTTTTTCAGGTTTTTCAACTGTCCATTGACCGCTCATGATGACATTTTTCAGAGAAAAGGTGGATCCGTTTCCGTTTTGTCTCATTTACCCACACAAAATGTTTATTTCAAACGGAAATGTTTGAAATTTGAGAAGTAGGCGGGGCGAGCTTTCAGTCTCTGCAGGTTATTTCATAAC</canonical_amplicon>
		<polymorphic_amplicon>TACAGTGACCAATAATCCTTCTCTTCTGTATATTTACCTCCATGATCGCCTGAMTCTCGGAATTTCCATAATTTTTTCAGGTTTTTCAACTGTCCATTGACCGCTCATGATGACATTTTTCAGAGAAAAGGTGGATCCGTTTCCGTTTTGTCTCATTTACCCACACAAAATGTTTATTTCAAACGGAAATGTTTGAAATTTGAGAAGTAGGCGGGGCGAGCTTTCAGTCTCTGCAGGTTATTTCATAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24075</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>561393</contig_pos>
        <strand></strand>
        <context>TTCAGGTTTT[T/G]CAACTGTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ACCTCCATGATCGCCTGAATCTCGGAATTTCCATAATTTTTTCAGGTTTT</left_flank>
        <right_flank>CAACTGTCCATTGACCGCTCATGATGACATTTTTCAGAGAAAAGGTGGAT</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGCTTTGCATTCAAAAATCTGAATCAACTGCAATTTTAATTTTTCAGGAAGCTCAAATCGTAACTGCATGTGAAGTCGGCAATCGAAGTTCGGGGTAGTCTAGAAGCAGGTAGAGTGAGTTATTTAGTTTCAATACTTGAATTTCGTATTAATTTTCGCCGTTTTGCACCTCTTATTAGTTCCATTTACCGTAAACACTGTAATATAAGACCACGATATATTACTTGTACTTTGATCTCATATATCCCGGTTCCTGTAACAGGTATCAAAAGTGATCAACCGACAAAATGTTTATCAAAATACCAACAAGATTTTATTAGTTGACACATTTTTCATATCTCTTTTAGAAATTGAGATAATTGAGCTCAAAGTCCAAGTGTAGGGTCGCCTTCTATTAGAGTGTTTACGGTAGTTACAGTGACCAATAATCCTTCTCTTCTGTATATTTACCTCCATGATCGCCTGAATCTCGGAATTTCCATAATTTTTTCAGGTTTTTCAACTGTCCATTGACCGCTCATGATGACATTTTTCAGAGAAAAGGTGGATCCGTTTCCGTTTTGTCTCATTTACCCACACAAAATGTTTATTTCAAACGGAAATGTTTGAAATTTGAGAAGTAGGCGGGGCGAGCTTTCAGTCTCTGCAGGTTATTTCATAACTTTTGATTCAGTGACACTCCCTTTCATGAGTTTGTACCGGAATCTGACAGATTTCACTGAAGAATTTTTCTGATTTCTCGTACAAAATATTGTATTAGTCAACCACTTGTTTGTCACCGATTTTGTTTCATTACAGGTGTCTGTTGGTATATTTATTAAATATCGAAGACCACATTTCCCTTCATAACAAAACCAACCGAATAGAATAACAATCGCCTTGGAAGCTTATATCTCCACTTTGCTCAACACCTCTTCTTTCTCTGCGTCTCTCCTATTTTCTCTGTAGACAGTCAGACTCTAACCGTGTAAATATGAAAAAAGAGCGGCACAAGACCGC</canonical>
            <polymorphic>TCGCTTTGCATTCAAAAATCTGAATCAACTGCAATTTTAATTTTTCAGGAAGCTCAAATCGTAACTGCATGTGAAGTCGGCAATCGAAGTTCGGGGTAGTCTAGAAGCAGGTAGAGTGAGTTATTTAGTTTCAATACTTGAATTTCGTATTAATTTTCGCCGTTTTGCACCTCTTATTAGTTCCATTTACCGTAAACACTGTAATATAAGACCACGATATATTACTTGTACTTTGATCTCATATATCCCGGTTCCTGTAACAGGTATCAAAAGTGATCAACCGACAAAATGTTTATCAAAATACCAACAAGATTTTATTAGTTGACACATTTTTCATATCTCTTTTAGAAATTGAGATAATTGAGCTCAAAGTCCAAGTGTAGGGTCGCCTTCTATTAGAGTGTTTACGGTAGTTACAGTGACCAATAATCCTTCTCTTCTGTATATTTACCTCCATGATCGCCTGAATCTCGGAATTTCCATAATTTTTTCAGGTTTTKCAACTGTCCATTGACCGCTCATGATGACATTTTTCAGAGAAAAGGTGGATCCGTTTCCGTTTTGTCTCATTTACCCACACAAAATGTTTATTTCAAACGGAAATGTTTGAAATTTGAGAAGTAGGCGGGGCGAGCTTTCAGTCTCTGCAGGTTATTTCATAACTTTTGATTCAGTGACACTCCCTTTCATGAGTTTGTACCGGAATCTGACAGATTTCACTGAAGAATTTTTCTGATTTCTCGTACAAAATATTGTATTAGTCAACCACTTGTTTGTCACCGATTTTGTTTCATTACAGGTGTCTGTTGGTATATTTATTAAATATCGAAGACCACATTTCCCTTCATAACAAAACCAACCGAATAGAATAACAATCGCCTTGGAAGCTTATATCTCCACTTTGCTCAACACCTCTTCTTTCTCTGCGTCTCTCCTATTTTCTCTGTAGACAGTCAGACTCTAACCGTGTAAATATGAAAAAAGAGCGGCACAAGACCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACAGTGACCAATAATCCTTCTC</pcr_primer_p1>
		<pcr_primer_p2>GTTATGAAATAACCTGCAGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TACAGTGACCAATAATCCTTCTCTTCTGTATATTTACCTCCATGATCGCCTGAATCTCGGAATTTCCATAATTTTTTCAGGTTTTTCAACTGTCCATTGACCGCTCATGATGACATTTTTCAGAGAAAAGGTGGATCCGTTTCCGTTTTGTCTCATTTACCCACACAAAATGTTTATTTCAAACGGAAATGTTTGAAATTTGAGAAGTAGGCGGGGCGAGCTTTCAGTCTCTGCAGGTTATTTCATAAC</canonical_amplicon>
		<polymorphic_amplicon>TACAGTGACCAATAATCCTTCTCTTCTGTATATTTACCTCCATGATCGCCTGAATCTCGGAATTTCCATAATTTTTTCAGGTTTTKCAACTGTCCATTGACCGCTCATGATGACATTTTTCAGAGAAAAGGTGGATCCGTTTCCGTTTTGTCTCATTTACCCACACAAAATGTTTATTTCAAACGGAAATGTTTGAAATTTGAGAAGTAGGCGGGGCGAGCTTTCAGTCTCTGCAGGTTATTTCATAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24076</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>572133</contig_pos>
        <strand>+</strand>
        <context>ggtagaaaCT[A/T]TGTTCTGGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTAAATTCTGGAAAATGTCTTTACCTTCGATGGAAATAATGGTAGAAACT</left_flank>
        <right_flank>TGTTCTGGCAAAATGAACTTTCTGAAACTGGGAGTTTGAGAAACTTTAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAACAGTAGTAAAAATAAAACAATGGTGTCGGATAAGTGTAAAAGAGATCTATCAGAATTTTATGTTTCGGTGGTTCTACATATGGGATTTAATTTTAAAACTTATTGATCCCAACATCATCAATGCTGTCAACAAAATTCGCCGGCGTCTTTCTATCATTGGATTTACGGCATCTAGTTTTTTGAAAACCATTGTAATCAGGAATAAAAAAACCGCCTCCAGACATTCGAGTACTAAAAGGATTATTGTTCACCGAAAAGATGAGTCAGTTGACGGTTGAGTTTTCCGAGAGAAAGGTCCACATTGAAAATATGATAATTTATGGGATTTTCTTAAAAATAAACTAGAAATCAAGTTTCTAGGTCAATTTTGAACCGATTTATGGTCATTTGAAGTTTGGAAGTACCGAAAACGGAATGCAGTCTCGCTTCTCTGCGTATATCAGCTAAATTCTGGAAAATGTCTTTACCTTCGATGGAAATAATGGTAGAAACTTTGTTCTGGCAAAATGAACTTTCTGAAACTGGGAGTTTGAGAAACTTTAAAAAATTCGACTTATTTGGAAGATTCTGCACCTATAGATTCTGCACCCATACACCTGACCATAAAATAAACTTTTTGAAACAATAAACCAATTAAAGAACAACTCAAAAAACTTGATTTAGAATATTGCATAAAATACAGTTACAAATCTTTAGTTTATGAATCTATGTGCTTTCATACTATTAGTTAACAGTACACGTCCTTCATCGAACGGTTCTAACCAAAAAACCATAACACTTCGCTTCAAATTTTCGAGTCGTTTTAATTTAAGTCAGAAAAAATGTATTCTATGGTGAAAAAATTTTGAAAATACATAAATTAGGGAGATGAAAGACATAGTAATTATAGACTGCTTTTACTATACAAGTGGATGGCCGGGCTGAGCCGGGCCGGGCCGGCCCGCTTTTCTCAAAACCCTCGGCCCGGCCTGCCTAGAACAACTTTTCGGAAAAT</canonical>
            <polymorphic>TTTGAACAGTAGTAAAAATAAAACAATGGTGTCGGATAAGTGTAAAAGAGATCTATCAGAATTTTATGTTTCGGTGGTTCTACATATGGGATTTAATTTTAAAACTTATTGATCCCAACATCATCAATGCTGTCAACAAAATTCGCCGGCGTCTTTCTATCATTGGATTTACGGCATCTAGTTTTTTGAAAACCATTGTAATCAGGAATAAAAAAACCGCCTCCAGACATTCGAGTACTAAAAGGATTATTGTTCACCGAAAAGATGAGTCAGTTGACGGTTGAGTTTTCCGAGAGAAAGGTCCACATTGAAAATATGATAATTTATGGGATTTTCTTAAAAATAAACTAGAAATCAAGTTTCTAGGTCAATTTTGAACCGATTTATGGTCATTTGAAGTTTGGAAGTACCGAAAACGGAATGCAGTCTCGCTTCTCTGCGTATATCAGCTAAATTCTGGAAAATGTCTTTACCTTCGATGGAAATAATGGTAGAAACTWTGTTCTGGCAAAATGAACTTTCTGAAACTGGGAGTTTGAGAAACTTTAAAAAATTCGACTTATTTGGAAGATTCTGCACCTATAGATTCTGCACCCATACACCTGACCATAAAATAAACTTTTTGAAACAATAAACCAATTAAAGAACAACTCAAAAAACTTGATTTAGAATATTGCATAAAATACAGTTACAAATCTTTAGTTTATGAATCTATGTGCTTTCATACTATTAGTTAACAGTACACGTCCTTCATCGAACGGTTCTAACCAAAAAACCATAACACTTCGCTTCAAATTTTCGAGTCGTTTTAATTTAAGTCAGAAAAAATGTATTCTATGGTGAAAAAATTTTGAAAATACATAAATTAGGGAGATGAAAGACATAGTAATTATAGACTGCTTTTACTATACAAGTGGATGGCCGGGCTGAGCCGGGCCGGGCCGGCCCGCTTTTCTCAAAACCCTCGGCCCGGCCTGCCTAGAACAACTTTTCGGAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCCACATTGAAAATATGATAA</pcr_primer_p1>
		<pcr_primer_p2>GTGCAGAATCTTCCAAATAAGT</pcr_primer_p2>
		<pcr_amplicon_size>280</pcr_amplicon_size>
		<canonical_amplicon>GGTCCACATTGAAAATATGATAATTTATGGGATTTTCTTAAAAATAAACTAGAAATCAAGTTTCTAGGTCAATTTTGAACCGATTTATGGTCATTTGAAGTTTGGAAGTACCGAAAACGGAATGCAGTCTCGCTTCTCTGCGTATATCAGCTAAATTCTGGAAAATGTCTTTACCTTCGATGGAAATAATGGTAGAAACTTTGTTCTGGCAAAATGAACTTTCTGAAACTGGGAGTTTGAGAAACTTTAAAAAATTCGACTTATTTGGAAGATTCTGCAC</canonical_amplicon>
		<polymorphic_amplicon>GGTCCACATTGAAAATATGATAATTTATGGGATTTTCTTAAAAATAAACTAGAAATCAAGTTTCTAGGTCAATTTTGAACCGATTTATGGTCATTTGAAGTTTGGAAGTACCGAAAACGGAATGCAGTCTCGCTTCTCTGCGTATATCAGCTAAATTCTGGAAAATGTCTTTACCTTCGATGGAAATAATGGTAGAAACTWTGTTCTGGCAAAATGAACTTTCTGAAACTGGGAGTTTGAGAAACTTTAAAAAATTCGACTTATTTGGAAGATTCTGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24077</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>574413</contig_pos>
        <strand></strand>
        <context>acgacaccta[A/C]cgcaacgtaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGCAGCTGTGGAAAAGTTGGCGCTGGCCGAAAATCCCACAACGACACCTA</left_flank>
        <right_flank>CGCAACGTAAAATGTTATTTTCCGTATCCAATGACTTGTAGAGTTTTCGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGGAACTTGTCAAAACAACTTTTGCAAGTGGAATCAAAAGAACATGAATATTTGAATGTCTATAGTTTGCTTCTTTTATAGAGCATGAGGTGGAATCATGATAATTTGGGACCAGAGCATTGTTAGGGATTTAGAAATTCTATCCATGAAAACGCGAAGGTTAGCTGCTTATTATTAGAATAATGGGTTGAATTTCAGTCATGTAAAATTGCGAGGATTGAAATATACGGTGCATGAAAAGAAAGGGAACAGTGAGCGAGATTGTTAGCTGGGGATAATTTTTAGGAGAAAGCTGGGATAAAAAGTTGAGGCGGGTTGGTCGAAGTTCAGAAGAGAAGATCAGAAGAGGTGTTGGAGCAGGAAGTCATTGGAAACCTGAAAAATATACGATCGGAGTTATAGGGGCTAGTTATAGGGGCTAGTGGGCTAGCTATCTGGTACAAAAATCGCAGCTGTGGAAAAGTTGGCGCTGGCCGAAAATCCCACAACGACACCTAACGCAACGTAAAATGTTATTTTCCGTATCCAATGACTTGTAGAGTTTTCGGTTTTTTTTTCTCAACAAAAGCGCGAAAATAAAAATTTTTGATGATGAAAAATTGATTGAAAACACCCGAAAATCAAGAAAGTAAATCCGGAAAATGAAAAAATTTTAGGTTACTGTAGTTGTCGTTGTGAGGCCTTCGGCCACGGACGTTTGTCTTCCACTGCTCTTTTTTGTGTCAGAATAATATTGTTTCGAAAATTTTAGAAACAATTTTAAACGTACAAAGATGTATAGAAGAATAAATAATTTCTCAATACTTTCCTGGATCTTAATACAAATTTATGAAACAGGGATAAGTTTTAAAAATTCAAAGTCCAGAAAATTGAAATTTCAATGGGTAGATTTCGAAAAAATATTTTTTCAAAGCTTCGATTTTTTCAAGAATTCCGCTTCAATATTTTGTGTTAAAATTCTATTTACTCTAAATTACCTTTCAATTGCTGCTTTTTCT</canonical>
            <polymorphic>CGAGGAACTTGTCAAAACAACTTTTGCAAGTGGAATCAAAAGAACATGAATATTTGAATGTCTATAGTTTGCTTCTTTTATAGAGCATGAGGTGGAATCATGATAATTTGGGACCAGAGCATTGTTAGGGATTTAGAAATTCTATCCATGAAAACGCGAAGGTTAGCTGCTTATTATTAGAATAATGGGTTGAATTTCAGTCATGTAAAATTGCGAGGATTGAAATATACGGTGCATGAAAAGAAAGGGAACAGTGAGCGAGATTGTTAGCTGGGGATAATTTTTAGGAGAAAGCTGGGATAAAAAGTTGAGGCGGGTTGGTCGAAGTTCAGAAGAGAAGATCAGAAGAGGTGTTGGAGCAGGAAGTCATTGGAAACCTGAAAAATATACGATCGGAGTTATAGGGGCTAGTTATAGGGGCTAGTGGGCTAGCTATCTGGTACAAAAATCGCAGCTGTGGAAAAGTTGGCGCTGGCCGAAAATCCCACAACGACACCTAMCGCAACGTAAAATGTTATTTTCCGTATCCAATGACTTGTAGAGTTTTCGGTTTTTTTTTCTCAACAAAAGCGCGAAAATAAAAATTTTTGATGATGAAAAATTGATTGAAAACACCCGAAAATCAAGAAAGTAAATCCGGAAAATGAAAAAATTTTAGGTTACTGTAGTTGTCGTTGTGAGGCCTTCGGCCACGGACGTTTGTCTTCCACTGCTCTTTTTTGTGTCAGAATAATATTGTTTCGAAAATTTTAGAAACAATTTTAAACGTACAAAGATGTATAGAAGAATAAATAATTTCTCAATACTTTCCTGGATCTTAATACAAATTTATGAAACAGGGATAAGTTTTAAAAATTCAAAGTCCAGAAAATTGAAATTTCAATGGGTAGATTTCGAAAAAATATTTTTTCAAAGCTTCGATTTTTTCAAGAATTCCGCTTCAATATTTTGTGTTAAAATTCTATTTACTCTAAATTACCTTTCAATTGCTGCTTTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGTTATAGGGGCTAGTTATAGG</pcr_primer_p1>
		<pcr_primer_p2>TCTTTGTACGTTTAAAATTGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>382</pcr_amplicon_size>
		<canonical_amplicon>GGAGTTATAGGGGCTAGTTATAGGGGCTAGTGGGCTAGCTATCTGGTACAAAAATCGCAGCTGTGGAAAAGTTGGCGCTGGCCGAAAATCCCACAACGACACCTAACGCAACGTAAAATGTTATTTTCCGTATCCAATGACTTGTAGAGTTTTCGGTTTTTTTTTCTCAACAAAAGCGCGAAAATAAAAATTTTTGATGATGAAAAATTGATTGAAAACACCCGAAAATCAAGAAAGTAAATCCGGAAAATGAAAAAATTTTAGGTTACTGTAGTTGTCGTTGTGAGGCCTTCGGCCACGGACGTTTGTCTTCCACTGCTCTTTTTTGTGTCAGAATAATATTGTTTCGAAAATTTTAGAAACAATTTTAAACGTACAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GGAGTTATAGGGGCTAGTTATAGGGGCTAGTGGGCTAGCTATCTGGTACAAAAATCGCAGCTGTGGAAAAGTTGGCGCTGGCCGAAAATCCCACAACGACACCTAMCGCAACGTAAAATGTTATTTTCCGTATCCAATGACTTGTAGAGTTTTCGGTTTTTTTTTCTCAACAAAAGCGCGAAAATAAAAATTTTTGATGATGAAAAATTGATTGAAAACACCCGAAAATCAAGAAAGTAAATCCGGAAAATGAAAAAATTTTAGGTTACTGTAGTTGTCGTTGTGAGGCCTTCGGCCACGGACGTTTGTCTTCCACTGCTCTTTTTTGTGTCAGAATAATATTGTTTCGAAAATTTTAGAAACAATTTTAAACGTACAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24078</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>618863</contig_pos>
        <strand></strand>
        <context>TTTGGACTTG[C/T]TTGTCGTCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAAGACATAGACTAAAGAATGCTCTGTAAAAATGTGTGTTTTGGACTTG</left_flank>
        <right_flank>TTGTCGTCTCGGGGACCTCCTCGTTTGATATGACACCCACGGGAAAAAAC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTGGATTTTCGAGCTCTTGAAATGCTCTTCTTCCATGTGATTACGAGGTCATTCTCCATCATTTTGATTTATTCGAATTTCCGCTTTTTTCTTCGTTTTTCTCTTCTCCCAAACGTTTTCTCGTTCAGTTCCACCCACTCTTCTTTACTTTCCAATGAGATCATTTTTCTTCCAAAGATCCCAAAGTTTCAGATCACAAAAATGCGAGAATGTTCGGTGATAATCAGTCCATACACAGTCATGATCTCTGCAGTGTTTATTCTATGCCTCATTCTTTCTCTTCTTGGTAATGCAATTGGTAAGTTATTCCTTGGAAAATTTAATTGTCTGTGGTCCCGTTTAAAATTTGATCTCATCCACATTTTTTGGTCTCCAAGGCTTGGGGTCCAAGCCCATCTGAAATCCGAACCTTTTTTCCATTTTGCTTCCAAACTGCAAAAACTGAAAGGAAGACATAGACTAAAGAATGCTCTGTAAAAATGTGTGTTTTGGACTTGCTTGTCGTCTCGGGGACCTCCTCGTTTGATATGACACCCACGGGAAAAAACACTCAATTTTTAAGGAAAATATTCGAAATTTGACAAGTGGGTCCATTTTTGGCAAAATTCAAAATCGAGGGATGTCTTTGAAAATAGTGAAATTATAGAAATCACCGTTTCTGAAAGTTTGGAAGTTTCAAATCCATTTCTTGAATTGTTCCTAATGGCCAATTGTGAAGAACCAAAAAAACCAGTTTTCGAAAATCAATACAGAAGTTACCTTTTCAACAAGTTTAGAAGTTTCAACAAATTTTGTTGAATCGTTCTTCTAACGAAATTGTCACTAACCGAAAAGAAAAATTCAAAATACCTCTTGACTATTCTAAGGGTTCGAGAATTGAATTTCAATAAGTGTGCATAGATCAAGTGTGTATATGTATGTCATAGGTGTTCAAAAAATAGACAGACAGAAGATATGAAATTTTATATTCAGCTATTTTCGAACGTTTTCGGTTTCGT</canonical>
            <polymorphic>TCCTGGATTTTCGAGCTCTTGAAATGCTCTTCTTCCATGTGATTACGAGGTCATTCTCCATCATTTTGATTTATTCGAATTTCCGCTTTTTTCTTCGTTTTTCTCTTCTCCCAAACGTTTTCTCGTTCAGTTCCACCCACTCTTCTTTACTTTCCAATGAGATCATTTTTCTTCCAAAGATCCCAAAGTTTCAGATCACAAAAATGCGAGAATGTTCGGTGATAATCAGTCCATACACAGTCATGATCTCTGCAGTGTTTATTCTATGCCTCATTCTTTCTCTTCTTGGTAATGCAATTGGTAAGTTATTCCTTGGAAAATTTAATTGTCTGTGGTCCCGTTTAAAATTTGATCTCATCCACATTTTTTGGTCTCCAAGGCTTGGGGTCCAAGCCCATCTGAAATCCGAACCTTTTTTCCATTTTGCTTCCAAACTGCAAAAACTGAAAGGAAGACATAGACTAAAGAATGCTCTGTAAAAATGTGTGTTTTGGACTTGYTTGTCGTCTCGGGGACCTCCTCGTTTGATATGACACCCACGGGAAAAAACACTCAATTTTTAAGGAAAATATTCGAAATTTGACAAGTGGGTCCATTTTTGGCAAAATTCAAAATCGAGGGATGTCTTTGAAAATAGTGAAATTATAGAAATCACCGTTTCTGAAAGTTTGGAAGTTTCAAATCCATTTCTTGAATTGTTCCTAATGGCCAATTGTGAAGAACCAAAAAAACCAGTTTTCGAAAATCAATACAGAAGTTACCTTTTCAACAAGTTTAGAAGTTTCAACAAATTTTGTTGAATCGTTCTTCTAACGAAATTGTCACTAACCGAAAAGAAAAATTCAAAATACCTCTTGACTATTCTAAGGGTTCGAGAATTGAATTTCAATAAGTGTGCATAGATCAAGTGTGTATATGTATGTCATAGGTGTTCAAAAAATAGACAGACAGAAGATATGAAATTTTATATTCAGCTATTTTCGAACGTTTTCGGTTTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAGGAAGACATAGACTAAAGA</pcr_primer_p1>
		<pcr_primer_p2>TCAAGAAATGGATTTGAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAAAGGAAGACATAGACTAAAGAATGCTCTGTAAAAATGTGTGTTTTGGACTTGCTTGTCGTCTCGGGGACCTCCTCGTTTGATATGACACCCACGGGAAAAAACACTCAATTTTTAAGGAAAATATTCGAAATTTGACAAGTGGGTCCATTTTTGGCAAAATTCAAAATCGAGGGATGTCTTTGAAAATAGTGAAATTATAGAAATCACCGTTTCTGAAAGTTTGGAAGTTTCAAATCCATTTCTTGA</canonical_amplicon>
		<polymorphic_amplicon>TGAAAGGAAGACATAGACTAAAGAATGCTCTGTAAAAATGTGTGTTTTGGACTTGYTTGTCGTCTCGGGGACCTCCTCGTTTGATATGACACCCACGGGAAAAAACACTCAATTTTTAAGGAAAATATTCGAAATTTGACAAGTGGGTCCATTTTTGGCAAAATTCAAAATCGAGGGATGTCTTTGAAAATAGTGAAATTATAGAAATCACCGTTTCTGAAAGTTTGGAAGTTTCAAATCCATTTCTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24079</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>619011</contig_pos>
        <strand></strand>
        <context>TGAAATTATA[G/A]AAATCACCGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTGGCAAAATTCAAAATCGAGGGATGTCTTTGAAAATAGTGAAATTATA</left_flank>
        <right_flank>AAATCACCGTTTCTGAAAGTTTGGAAGTTTCAAATCCATTTCTTGAATTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTCCAATGAGATCATTTTTCTTCCAAAGATCCCAAAGTTTCAGATCACAAAAATGCGAGAATGTTCGGTGATAATCAGTCCATACACAGTCATGATCTCTGCAGTGTTTATTCTATGCCTCATTCTTTCTCTTCTTGGTAATGCAATTGGTAAGTTATTCCTTGGAAAATTTAATTGTCTGTGGTCCCGTTTAAAATTTGATCTCATCCACATTTTTTGGTCTCCAAGGCTTGGGGTCCAAGCCCATCTGAAATCCGAACCTTTTTTCCATTTTGCTTCCAAACTGCAAAAACTGAAAGGAAGACATAGACTAAAGAATGCTCTGTAAAAATGTGTGTTTTGGACTTGCTTGTCGTCTCGGGGACCTCCTCGTTTGATATGACACCCACGGGAAAAAACACTCAATTTTTAAGGAAAATATTCGAAATTTGACAAGTGGGTCCATTTTTGGCAAAATTCAAAATCGAGGGATGTCTTTGAAAATAGTGAAATTATAGAAATCACCGTTTCTGAAAGTTTGGAAGTTTCAAATCCATTTCTTGAATTGTTCCTAATGGCCAATTGTGAAGAACCAAAAAAACCAGTTTTCGAAAATCAATACAGAAGTTACCTTTTCAACAAGTTTAGAAGTTTCAACAAATTTTGTTGAATCGTTCTTCTAACGAAATTGTCACTAACCGAAAAGAAAAATTCAAAATACCTCTTGACTATTCTAAGGGTTCGAGAATTGAATTTCAATAAGTGTGCATAGATCAAGTGTGTATATGTATGTCATAGGTGTTCAAAAAATAGACAGACAGAAGATATGAAATTTTATATTCAGCTATTTTCGAACGTTTTCGGTTTCGTGAAATTTAGAAAGCCTAATTGTAGTAAGCATTTTCAATTCAAACTTGTAAATGGTTAACTAAACTGACAAAGACGGCAAATACTAGGAGAAACCGCCCGGGTTTGATTCCTACCAGTGGCGCGCAATTTCACTGACTGAGTAGTCCAA</canonical>
            <polymorphic>ACTTTCCAATGAGATCATTTTTCTTCCAAAGATCCCAAAGTTTCAGATCACAAAAATGCGAGAATGTTCGGTGATAATCAGTCCATACACAGTCATGATCTCTGCAGTGTTTATTCTATGCCTCATTCTTTCTCTTCTTGGTAATGCAATTGGTAAGTTATTCCTTGGAAAATTTAATTGTCTGTGGTCCCGTTTAAAATTTGATCTCATCCACATTTTTTGGTCTCCAAGGCTTGGGGTCCAAGCCCATCTGAAATCCGAACCTTTTTTCCATTTTGCTTCCAAACTGCAAAAACTGAAAGGAAGACATAGACTAAAGAATGCTCTGTAAAAATGTGTGTTTTGGACTTGCTTGTCGTCTCGGGGACCTCCTCGTTTGATATGACACCCACGGGAAAAAACACTCAATTTTTAAGGAAAATATTCGAAATTTGACAAGTGGGTCCATTTTTGGCAAAATTCAAAATCGAGGGATGTCTTTGAAAATAGTGAAATTATARAAATCACCGTTTCTGAAAGTTTGGAAGTTTCAAATCCATTTCTTGAATTGTTCCTAATGGCCAATTGTGAAGAACCAAAAAAACCAGTTTTCGAAAATCAATACAGAAGTTACCTTTTCAACAAGTTTAGAAGTTTCAACAAATTTTGTTGAATCGTTCTTCTAACGAAATTGTCACTAACCGAAAAGAAAAATTCAAAATACCTCTTGACTATTCTAAGGGTTCGAGAATTGAATTTCAATAAGTGTGCATAGATCAAGTGTGTATATGTATGTCATAGGTGTTCAAAAAATAGACAGACAGAAGATATGAAATTTTATATTCAGCTATTTTCGAACGTTTTCGGTTTCGTGAAATTTAGAAAGCCTAATTGTAGTAAGCATTTTCAATTCAAACTTGTAAATGGTTAACTAAACTGACAAAGACGGCAAATACTAGGAGAAACCGCCCGGGTTTGATTCCTACCAGTGGCGCGCAATTTCACTGACTGAGTAGTCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTCGAAATTTGACAAGTGG</pcr_primer_p1>
		<pcr_primer_p2>GTTAGAAGAACGATTCAACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATATTCGAAATTTGACAAGTGGGTCCATTTTTGGCAAAATTCAAAATCGAGGGATGTCTTTGAAAATAGTGAAATTATAGAAATCACCGTTTCTGAAAGTTTGGAAGTTTCAAATCCATTTCTTGAATTGTTCCTAATGGCCAATTGTGAAGAACCAAAAAAACCAGTTTTCGAAAATCAATACAGAAGTTACCTTTTCAACAAGTTTAGAAGTTTCAACAAATTTTGTTGAATCGTTCTTCTAAC</canonical_amplicon>
		<polymorphic_amplicon>ATATTCGAAATTTGACAAGTGGGTCCATTTTTGGCAAAATTCAAAATCGAGGGATGTCTTTGAAAATAGTGAAATTATARAAATCACCGTTTCTGAAAGTTTGGAAGTTTCAAATCCATTTCTTGAATTGTTCCTAATGGCCAATTGTGAAGAACCAAAAAAACCAGTTTTCGAAAATCAATACAGAAGTTACCTTTTCAACAAGTTTAGAAGTTTCAACAAATTTTGTTGAATCGTTCTTCTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24080</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>753183</contig_pos>
        <strand></strand>
        <context>ACGGCCCGTC[G/C]GTTCTCTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TTCTATTACGAGATTCCGATCGTCCGTTAACAGTCCGTTGACGGCCCGTC</left_flank>
        <right_flank>GTTCTCTTTCGGCTGCCAAGTAGTACCTTCAGCTGTCATTTAGCAGATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAATTTGAAATCAAGGATCAGATGATTTTTTGGATTTTGGTTGTTCAAAAAGACAAATTAGTGAAAAGTCAAAGCTGGAAAATAAAACAAAATAACGAATTTATAGTTTCATATCATGATTCTCCCTAAGATTATGTCGCCTACAGTAGCCATTCAAAATAAGAAAAAGCAACAAAAATATGGCCAACTGTAATTAGTCTTATGGTTTATTTGAAATTCAAATCAGTTTTGAACCACTGCTGACTACCGTAAAACCTGTGATAGAAGGGCACCCCCACTGTCAAGTGTTCGCTAAATTATCTCAATTCCTGCGCAAGATATCAAAATGTATCAATTGACAAAAAATTCTGATGTTATGATAAACAGTTTATCAGTTGACAACTTTTCTATAACTTATTATTAGACTGGAACTGAGAGCAATTGGCTCAAAGCTGGAAGTTAATGGCCCTTCTATTACGAGATTCCGATCGTCCGTTAACAGTCCGTTGACGGCCCGTCGGTTCTCTTTCGGCTGCCAAGTAGTACCTTCAGCTGTCATTTAGCAGATTTTCGACAGTGCTCCTTTACCTGTGGCCAACTTTGGAGTCCTGAAAAACTATTCCAGGGTTTTGTCGATTTTTCGAAAATTTTAGAGTATGTGAAACAAATTTAGAGCTTTGTTTTTTCTTTGTTTTTTTGACAACTTTTTCGTACGAATCCAACCAACCCAGTTAAGCGGTTTAAAAGTTGTGAAACTCTCACTTCAGTGCTCATTTGGCATTTTCGACACTTTACGGTATATCTTTACGGTATATCTTACGGTATATCTGATAAGAATGGGATTTAACAATAAAGTTGTCAATTACAAAACTGAAGCTATAATTTTGTTTAATGTACTCTGAAATCTTCAGACAAATCGAAAAACTTTTGAGAACTTTCTAAAATTGATTTTTGCTACGGAAAAGACCAAAATATGAATTGTTTCTGTCTTCAAATTAAGGTGGAATTTTTAGAATTGGG</canonical>
            <polymorphic>ATAATTTGAAATCAAGGATCAGATGATTTTTTGGATTTTGGTTGTTCAAAAAGACAAATTAGTGAAAAGTCAAAGCTGGAAAATAAAACAAAATAACGAATTTATAGTTTCATATCATGATTCTCCCTAAGATTATGTCGCCTACAGTAGCCATTCAAAATAAGAAAAAGCAACAAAAATATGGCCAACTGTAATTAGTCTTATGGTTTATTTGAAATTCAAATCAGTTTTGAACCACTGCTGACTACCGTAAAACCTGTGATAGAAGGGCACCCCCACTGTCAAGTGTTCGCTAAATTATCTCAATTCCTGCGCAAGATATCAAAATGTATCAATTGACAAAAAATTCTGATGTTATGATAAACAGTTTATCAGTTGACAACTTTTCTATAACTTATTATTAGACTGGAACTGAGAGCAATTGGCTCAAAGCTGGAAGTTAATGGCCCTTCTATTACGAGATTCCGATCGTCCGTTAACAGTCCGTTGACGGCCCGTCSGTTCTCTTTCGGCTGCCAAGTAGTACCTTCAGCTGTCATTTAGCAGATTTTCGACAGTGCTCCTTTACCTGTGGCCAACTTTGGAGTCCTGAAAAACTATTCCAGGGTTTTGTCGATTTTTCGAAAATTTTAGAGTATGTGAAACAAATTTAGAGCTTTGTTTTTTCTTTGTTTTTTTGACAACTTTTTCGTACGAATCCAACCAACCCAGTTAAGCGGTTTAAAAGTTGTGAAACTCTCACTTCAGTGCTCATTTGGCATTTTCGACACTTTACGGTATATCTTTACGGTATATCTTACGGTATATCTGATAAGAATGGGATTTAACAATAAAGTTGTCAATTACAAAACTGAAGCTATAATTTTGTTTAATGTACTCTGAAATCTTCAGACAAATCGAAAAACTTTTGAGAACTTTCTAAAATTGATTTTTGCTACGGAAAAGACCAAAATATGAATTGTTTCTGTCTTCAAATTAAGGTGGAATTTTTAGAATTGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTGAACCACTGCTGACT</pcr_primer_p1>
		<pcr_primer_p2>CGAAAATCTGCTAAATGACAG</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>GTTTTGAACCACTGCTGACTACCGTAAAACCTGTGATAGAAGGGCACCCCCACTGTCAAGTGTTCGCTAAATTATCTCAATTCCTGCGCAAGATATCAAAATGTATCAATTGACAAAAAATTCTGATGTTATGATAAACAGTTTATCAGTTGACAACTTTTCTATAACTTATTATTAGACTGGAACTGAGAGCAATTGGCTCAAAGCTGGAAGTTAATGGCCCTTCTATTACGAGATTCCGATCGTCCGTTAACAGTCCGTTGACGGCCCGTCGGTTCTCTTTCGGCTGCCAAGTAGTACCTTCAGCTGTCATTTAGCAGATTTTCG</canonical_amplicon>
		<polymorphic_amplicon>GTTTTGAACCACTGCTGACTACCGTAAAACCTGTGATAGAAGGGCACCCCCACTGTCAAGTGTTCGCTAAATTATCTCAATTCCTGCGCAAGATATCAAAATGTATCAATTGACAAAAAATTCTGATGTTATGATAAACAGTTTATCAGTTGACAACTTTTCTATAACTTATTATTAGACTGGAACTGAGAGCAATTGGCTCAAAGCTGGAAGTTAATGGCCCTTCTATTACGAGATTCCGATCGTCCGTTAACAGTCCGTTGACGGCCCGTCSGTTCTCTTTCGGCTGCCAAGTAGTACCTTCAGCTGTCATTTAGCAGATTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24081</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>753237</contig_pos>
        <strand>+</strand>
        <context>CAGATTTTCG[A/G]CAGTGCTCCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCTTTCGGCTGCCAAGTAGTACCTTCAGCTGTCATTTAGCAGATTTTCG</left_flank>
        <right_flank>CAGTGCTCCTTTACCTGTGGCCAACTTTGGAGTCCTGAAAAACTATTCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAATTAGTGAAAAGTCAAAGCTGGAAAATAAAACAAAATAACGAATTTATAGTTTCATATCATGATTCTCCCTAAGATTATGTCGCCTACAGTAGCCATTCAAAATAAGAAAAAGCAACAAAAATATGGCCAACTGTAATTAGTCTTATGGTTTATTTGAAATTCAAATCAGTTTTGAACCACTGCTGACTACCGTAAAACCTGTGATAGAAGGGCACCCCCACTGTCAAGTGTTCGCTAAATTATCTCAATTCCTGCGCAAGATATCAAAATGTATCAATTGACAAAAAATTCTGATGTTATGATAAACAGTTTATCAGTTGACAACTTTTCTATAACTTATTATTAGACTGGAACTGAGAGCAATTGGCTCAAAGCTGGAAGTTAATGGCCCTTCTATTACGAGATTCCGATCGTCCGTTAACAGTCCGTTGACGGCCCGTCGGTTCTCTTTCGGCTGCCAAGTAGTACCTTCAGCTGTCATTTAGCAGATTTTCGACAGTGCTCCTTTACCTGTGGCCAACTTTGGAGTCCTGAAAAACTATTCCAGGGTTTTGTCGATTTTTCGAAAATTTTAGAGTATGTGAAACAAATTTAGAGCTTTGTTTTTTCTTTGTTTTTTTGACAACTTTTTCGTACGAATCCAACCAACCCAGTTAAGCGGTTTAAAAGTTGTGAAACTCTCACTTCAGTGCTCATTTGGCATTTTCGACACTTTACGGTATATCTTTACGGTATATCTTACGGTATATCTGATAAGAATGGGATTTAACAATAAAGTTGTCAATTACAAAACTGAAGCTATAATTTTGTTTAATGTACTCTGAAATCTTCAGACAAATCGAAAAACTTTTGAGAACTTTCTAAAATTGATTTTTGCTACGGAAAAGACCAAAATATGAATTGTTTCTGTCTTCAAATTAAGGTGGAATTTTTAGAATTGGGTTCCTCTAAATTTCATGTTCTGTCAATTGTACTTTGAATCAGTTTATCTCGGTG</canonical>
            <polymorphic>CAAATTAGTGAAAAGTCAAAGCTGGAAAATAAAACAAAATAACGAATTTATAGTTTCATATCATGATTCTCCCTAAGATTATGTCGCCTACAGTAGCCATTCAAAATAAGAAAAAGCAACAAAAATATGGCCAACTGTAATTAGTCTTATGGTTTATTTGAAATTCAAATCAGTTTTGAACCACTGCTGACTACCGTAAAACCTGTGATAGAAGGGCACCCCCACTGTCAAGTGTTCGCTAAATTATCTCAATTCCTGCGCAAGATATCAAAATGTATCAATTGACAAAAAATTCTGATGTTATGATAAACAGTTTATCAGTTGACAACTTTTCTATAACTTATTATTAGACTGGAACTGAGAGCAATTGGCTCAAAGCTGGAAGTTAATGGCCCTTCTATTACGAGATTCCGATCGTCCGTTAACAGTCCGTTGACGGCCCGTCGGTTCTCTTTCGGCTGCCAAGTAGTACCTTCAGCTGTCATTTAGCAGATTTTCGRCAGTGCTCCTTTACCTGTGGCCAACTTTGGAGTCCTGAAAAACTATTCCAGGGTTTTGTCGATTTTTCGAAAATTTTAGAGTATGTGAAACAAATTTAGAGCTTTGTTTTTTCTTTGTTTTTTTGACAACTTTTTCGTACGAATCCAACCAACCCAGTTAAGCGGTTTAAAAGTTGTGAAACTCTCACTTCAGTGCTCATTTGGCATTTTCGACACTTTACGGTATATCTTTACGGTATATCTTACGGTATATCTGATAAGAATGGGATTTAACAATAAAGTTGTCAATTACAAAACTGAAGCTATAATTTTGTTTAATGTACTCTGAAATCTTCAGACAAATCGAAAAACTTTTGAGAACTTTCTAAAATTGATTTTTGCTACGGAAAAGACCAAAATATGAATTGTTTCTGTCTTCAAATTAAGGTGGAATTTTTAGAATTGGGTTCCTCTAAATTTCATGTTCTGTCAATTGTACTTTGAATCAGTTTATCTCGGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>253 220 115 92 86 75 59 44 31 13 12</canonical_bands>
                <polymorphic_bands>295 253 115 92 86 59 44 31 13 12</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 156 143 133 62 8</canonical_bands>
                <polymorphic_bands>560 156 143 133 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTGAACCACTGCTGACT</pcr_primer_p1>
		<pcr_primer_p2>ACAACTTTTAAACCGCTTAACT</pcr_primer_p2>
		<pcr_amplicon_size>505</pcr_amplicon_size>
		<canonical_amplicon>GTTTTGAACCACTGCTGACTACCGTAAAACCTGTGATAGAAGGGCACCCCCACTGTCAAGTGTTCGCTAAATTATCTCAATTCCTGCGCAAGATATCAAAATGTATCAATTGACAAAAAATTCTGATGTTATGATAAACAGTTTATCAGTTGACAACTTTTCTATAACTTATTATTAGACTGGAACTGAGAGCAATTGGCTCAAAGCTGGAAGTTAATGGCCCTTCTATTACGAGATTCCGATCGTCCGTTAACAGTCCGTTGACGGCCCGTCGGTTCTCTTTCGGCTGCCAAGTAGTACCTTCAGCTGTCATTTAGCAGATTTTCGACAGTGCTCCTTTACCTGTGGCCAACTTTGGAGTCCTGAAAAACTATTCCAGGGTTTTGTCGATTTTTCGAAAATTTTAGAGTATGTGAAACAAATTTAGAGCTTTGTTTTTTCTTTGTTTTTTTGACAACTTTTTCGTACGAATCCAACCAACCCAGTTAAGCGGTTTAAAAGTTGT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTGAACCACTGCTGACTACCGTAAAACCTGTGATAGAAGGGCACCCCCACTGTCAAGTGTTCGCTAAATTATCTCAATTCCTGCGCAAGATATCAAAATGTATCAATTGACAAAAAATTCTGATGTTATGATAAACAGTTTATCAGTTGACAACTTTTCTATAACTTATTATTAGACTGGAACTGAGAGCAATTGGCTCAAAGCTGGAAGTTAATGGCCCTTCTATTACGAGATTCCGATCGTCCGTTAACAGTCCGTTGACGGCCCGTCGGTTCTCTTTCGGCTGCCAAGTAGTACCTTCAGCTGTCATTTAGCAGATTTTCGRCAGTGCTCCTTTACCTGTGGCCAACTTTGGAGTCCTGAAAAACTATTCCAGGGTTTTGTCGATTTTTCGAAAATTTTAGAGTATGTGAAACAAATTTAGAGCTTTGTTTTTTCTTTGTTTTTTTGACAACTTTTTCGTACGAATCCAACCAACCCAGTTAAGCGGTTTAAAAGTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24082</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>787961</contig_pos>
        <strand></strand>
        <context>ccttcggcag[T/C]ggaaacccga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATGAAATTATTTTTAGGCTACGGTAGTTGTCGTCATGAGACCTTCGGCAG</left_flank>
        <right_flank>GGAAACCCGATTTTCTCTTCAACAGCTCCAATTTTTGCATGCCAAAATGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGATCAAAAATTTGGATGTGAATTTCCTTTTTTTTCCTTTGCCAACACGATTCCACCCTTTTCAATAGGTTTATCATTTCTAAACCCGCATTCTGCAGCTTCACATGATTCTTCTCCGACGTCTTCTTGCCACATCATCTAGTCAGAGAATCCCGGAAAGAAGTATATTCTTCAGTCGTGTCCCAGAATCTGAGGTAGTATATCATAATGCGAATACAACGACTTCACAAGGTAAGCTTTCAAAAAGCTTTATTATTCTGGTAAAAAAATCGGAGCTGTGGAAGAGAAAAGCTTATGACCGAAGGTCCCACAGCGACAACAAACCTAAAAATGTTCATTTTCATGATTTACTTTCTCGATTTTCACTGTCGGTCGGAGAATAAAAAAAGTCTCATTTTGAAAAAAATGACTGAAAACGAACGAAAATTGAGAAAATAAATCCGGAAAAATGAAATTATTTTTAGGCTACGGTAGTTGTCGTCATGAGACCTTCGGCAGTGGAAACCCGATTTTCTCTTCAACAGCTCCAATTTTTGCATGCCAAAATGATAAAAGTTAACTTTTAGACACTTCCTCGAAACCAGTCATACTGATGATCGGATGGGCTGGTGCTGCATCAAAACATTTGAAAAAATATACAAACATTTACACTGACAAAGGGTTCCTTTTTTAATCTAAAACTATGTATGTCGCGTCAAATAAATTTAGGTTCAATGTGATCTCAATCTGTCCTCCACTGTTCCATTTCAAAGTTCCCAATGATTCAATCGGTAAAAAGATTCTTCCTGTTGTGGATTCGATTCAGGACAAGTAAGTAATTACAGATTTTTTAAAAAATTCAAAGAAATTGCAGACCTGTTGTTATTCACTCGTTTTCAATGAATGGAATAAGAGGCCTAATCTCTCTGGCAAAAGCTTCAAATAACCCAAAACTCTTTGAAAGACTTGAGGGAATTGTCTTCGATAGTGCTCCGTCCCGTACACTACCGTACCAGAATG</canonical>
            <polymorphic>TTGATCAAAAATTTGGATGTGAATTTCCTTTTTTTTCCTTTGCCAACACGATTCCACCCTTTTCAATAGGTTTATCATTTCTAAACCCGCATTCTGCAGCTTCACATGATTCTTCTCCGACGTCTTCTTGCCACATCATCTAGTCAGAGAATCCCGGAAAGAAGTATATTCTTCAGTCGTGTCCCAGAATCTGAGGTAGTATATCATAATGCGAATACAACGACTTCACAAGGTAAGCTTTCAAAAAGCTTTATTATTCTGGTAAAAAAATCGGAGCTGTGGAAGAGAAAAGCTTATGACCGAAGGTCCCACAGCGACAACAAACCTAAAAATGTTCATTTTCATGATTTACTTTCTCGATTTTCACTGTCGGTCGGAGAATAAAAAAAGTCTCATTTTGAAAAAAATGACTGAAAACGAACGAAAATTGAGAAAATAAATCCGGAAAAATGAAATTATTTTTAGGCTACGGTAGTTGTCGTCATGAGACCTTCGGCAGYGGAAACCCGATTTTCTCTTCAACAGCTCCAATTTTTGCATGCCAAAATGATAAAAGTTAACTTTTAGACACTTCCTCGAAACCAGTCATACTGATGATCGGATGGGCTGGTGCTGCATCAAAACATTTGAAAAAATATACAAACATTTACACTGACAAAGGGTTCCTTTTTTAATCTAAAACTATGTATGTCGCGTCAAATAAATTTAGGTTCAATGTGATCTCAATCTGTCCTCCACTGTTCCATTTCAAAGTTCCCAATGATTCAATCGGTAAAAAGATTCTTCCTGTTGTGGATTCGATTCAGGACAAGTAAGTAATTACAGATTTTTTAAAAAATTCAAAGAAATTGCAGACCTGTTGTTATTCACTCGTTTTCAATGAATGGAATAAGAGGCCTAATCTCTCTGGCAAAAGCTTCAAATAACCCAAAACTCTTTGAAAGACTTGAGGGAATTGTCTTCGATAGTGCTCCGTCCCGTACACTACCGTACCAGAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>135 101 75 69 68 57 55 53 48 48 47 42 39 30 29 27 21 18 16 14 8</canonical_bands>
                <polymorphic_bands>204 101 75 68 57 55 53 48 48 47 42 39 30 29 27 21 18 16 14 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACAAGGTAAGCTTTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GTTTCGAGGAAGTGTCTAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>356</pcr_amplicon_size>
		<canonical_amplicon>CACAAGGTAAGCTTTCAAAAAGCTTTATTATTCTGGTAAAAAAATCGGAGCTGTGGAAGAGAAAAGCTTATGACCGAAGGTCCCACAGCGACAACAAACCTAAAAATGTTCATTTTCATGATTTACTTTCTCGATTTTCACTGTCGGTCGGAGAATAAAAAAAGTCTCATTTTGAAAAAAATGACTGAAAACGAACGAAAATTGAGAAAATAAATCCGGAAAAATGAAATTATTTTTAGGCTACGGTAGTTGTCGTCATGAGACCTTCGGCAGTGGAAACCCGATTTTCTCTTCAACAGCTCCAATTTTTGCATGCCAAAATGATAAAAGTTAACTTTTAGACACTTCCTCGAAAC</canonical_amplicon>
		<polymorphic_amplicon>CACAAGGTAAGCTTTCAAAAAGCTTTATTATTCTGGTAAAAAAATCGGAGCTGTGGAAGAGAAAAGCTTATGACCGAAGGTCCCACAGCGACAACAAACCTAAAAATGTTCATTTTCATGATTTACTTTCTCGATTTTCACTGTCGGTCGGAGAATAAAAAAAGTCTCATTTTGAAAAAAATGACTGAAAACGAACGAAAATTGAGAAAATAAATCCGGAAAAATGAAATTATTTTTAGGCTACGGTAGTTGTCGTCATGAGACCTTCGGCAGYGGAAACCCGATTTTCTCTTCAACAGCTCCAATTTTTGCATGCCAAAATGATAAAAGTTAACTTTTAGACACTTCCTCGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24083</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>875180</contig_pos>
        <strand></strand>
        <context>AATCTAAAAA[C/T]AAATCAATCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGGCGCTCAACCATATCTTGAAGCATATCTTTGATACCAATCTAAAAA</left_flank>
        <right_flank>AAATCAATCTTATGAAAATTTTGATCTTTTGTCACATACTCTAACATAAG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCGAGGTGACTTGATGGCTCCATTGATGTATCTTCCAGTAGCTGAGCATTCAGACAAAGTAGTGCAGTGCAGGTTGGCGCATTTAAATTCATCCCCCAGATATTTATAAAATTGATTTCAGATGGCATCCTCACGACTTCTCTTTCCTGTCAACCAGTGCTGATCGCTCAGCCGTACTTTGGTCTCTCCCCAATCGCTGATCTCTTTTTTCGACTTAAAATACCGGTTTCCTAGAAATGAATGTTTATTGCTTCTGAAAACTGGAACTTAACAAAATTTCAATGGAAACATAACAACAACAACAACAAAAAACAAGATAACAAATAAAGGAGAACTATGAAAATCAGACAACAAATTTTTGTGTTCACTCCAAATTATTAGAGTCGAAAAGTCGAGCGACGAGTGTCTCTTTCAAATCATCCGCGGTGATGATATTACGATCCTTCGAAAGGCGCTCAACCATATCTTGAAGCATATCTTTGATACCAATCTAAAAACAAATCAATCTTATGAAAATTTTGATCTTTTGTCACATACTCTAACATAAGTTTGAATTTCCTTCAGAATTCTTGTCTCAGCGTTAGGATCGAACGGCACGACTCCATTGTCGAGACATTCCAGCAACATTTGGGCTCCAATCTGAGAAGTATCAGCGAGCTTATGCTGGGAGACCAATTTAGTTCCTTCGTGATATTTGCAAGGATGCTGAAAAGTTTGTTCATCGTTTTAGCATTATGAGACATATAAACTACCGCTCCTGATGCCTCATATAGTAGTACATAAAGTTTATTATGTGTTGGAACTGCGCGAGCTGGGAGTCCAGGAACTAACGACGCAACAGAATTCTGGCTAGAAACACGTCCAGTCAGCATATCACGAAGACACAATTTGTAGTCAGGAAACATTCCCTCTGGAATATCGTTCACGAGTTTCGACCACAACTCTTGCATTTCCTTGAACTTTCTTGGCTCCGTTGTTGTGTTTTTGATTGGCTAAAA</canonical>
            <polymorphic>ATGCGAGGTGACTTGATGGCTCCATTGATGTATCTTCCAGTAGCTGAGCATTCAGACAAAGTAGTGCAGTGCAGGTTGGCGCATTTAAATTCATCCCCCAGATATTTATAAAATTGATTTCAGATGGCATCCTCACGACTTCTCTTTCCTGTCAACCAGTGCTGATCGCTCAGCCGTACTTTGGTCTCTCCCCAATCGCTGATCTCTTTTTTCGACTTAAAATACCGGTTTCCTAGAAATGAATGTTTATTGCTTCTGAAAACTGGAACTTAACAAAATTTCAATGGAAACATAACAACAACAACAACAAAAAACAAGATAACAAATAAAGGAGAACTATGAAAATCAGACAACAAATTTTTGTGTTCACTCCAAATTATTAGAGTCGAAAAGTCGAGCGACGAGTGTCTCTTTCAAATCATCCGCGGTGATGATATTACGATCCTTCGAAAGGCGCTCAACCATATCTTGAAGCATATCTTTGATACCAATCTAAAAAYAAATCAATCTTATGAAAATTTTGATCTTTTGTCACATACTCTAACATAAGTTTGAATTTCCTTCAGAATTCTTGTCTCAGCGTTAGGATCGAACGGCACGACTCCATTGTCGAGACATTCCAGCAACATTTGGGCTCCAATCTGAGAAGTATCAGCGAGCTTATGCTGGGAGACCAATTTAGTTCCTTCGTGATATTTGCAAGGATGCTGAAAAGTTTGTTCATCGTTTTAGCATTATGAGACATATAAACTACCGCTCCTGATGCCTCATATAGTAGTACATAAAGTTTATTATGTGTTGGAACTGCGCGAGCTGGGAGTCCAGGAACTAACGACGCAACAGAATTCTGGCTAGAAACACGTCCAGTCAGCATATCACGAAGACACAATTTGTAGTCAGGAAACATTCCCTCTGGAATATCGTTCACGAGTTTCGACCACAACTCTTGCATTTCCTTGAACTTTCTTGGCTCCGTTGTTGTGTTTTTGATTGGCTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGAACTATGAAAATCAGACAA</pcr_primer_p1>
		<pcr_primer_p2>GAGACAAGAATTCTGAAGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGAGAACTATGAAAATCAGACAACAAATTTTTGTGTTCACTCCAAATTATTAGAGTCGAAAAGTCGAGCGACGAGTGTCTCTTTCAAATCATCCGCGGTGATGATATTACGATCCTTCGAAAGGCGCTCAACCATATCTTGAAGCATATCTTTGATACCAATCTAAAAACAAATCAATCTTATGAAAATTTTGATCTTTTGTCACATACTCTAACATAAGTTTGAATTTCCTTCAGAATTCTTGTCTC</canonical_amplicon>
		<polymorphic_amplicon>GGAGAACTATGAAAATCAGACAACAAATTTTTGTGTTCACTCCAAATTATTAGAGTCGAAAAGTCGAGCGACGAGTGTCTCTTTCAAATCATCCGCGGTGATGATATTACGATCCTTCGAAAGGCGCTCAACCATATCTTGAAGCATATCTTTGATACCAATCTAAAAAYAAATCAATCTTATGAAAATTTTGATCTTTTGTCACATACTCTAACATAAGTTTGAATTTCCTTCAGAATTCTTGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24084</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>888804</contig_pos>
        <strand></strand>
        <context>GGAAAAACAC[T/G]ASAGCTTATG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AAGAGAAGGCATTTTGCCGATGAGACCCCGCAATTTCCGGGGAAAAACAC</left_flank>
        <right_flank>ACAGCTTATGCCCTATGTATGGCCTTGGCTTCGCATAGAACTCTGCCAAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGACAGTTCAGTTCGCAAATAAATTGTTATCTCCATTTTTTGGAGTTTGAAAAATATTGTTCATACTTACACATATCATTCCGGACCGAACTTTCTGCATCATATTTCCGTCTTCACTCCGAACAAATCCCTCAAGTATGACACCAGAGTCTACAAACTGAAAACACTTGATTTCTTTCCATTTACCTAAATATTAGTTATTTTTACCTGAATGGACCATAAATTGAGTCGAACGATATCCATATCAAGTACATTTTGTACTCGAACAGGAACGACATTTCTGTCTCCCATTTTTTTTCACAAAATGAGGTTTTATAACAAAAATATGGCGTTCCTATTGTAAAATCAAGCTGACAATCCAAAGGCAAACAAGAAAACGGTTTTGATTTCTTTACCATTCAAATGCGAAAAATTGGCGGCAAAATCGGTGTGCGGTGGAGCGCACTTCAAGAGAAGGCATTTTGCCGATGAGACCCCGCAATTTCCGGGGAAAAACACTACAGCTTATGCCCTATGTATGGCCTTGGCTTCGCATAGAACTCTGCCAAGCTTGCCAACGCCAGATCACTCTGGTTCAATGTCGGGGCGCTAAATCACTTGCATACGACTTGGTCTCTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTCTTATACTGCGATCTGTTGAGACTATCCTTTGATTGAGTTTTTTGTTTCCCTTTTTTTTGCCACATGTAGAATCACTTTTAAGTCTACGAAATCTACGTCCCGACTTTCGACTGAGCCTAACCACTAGTAGTAAGCCACGTAAGTAGCCAACACATCAAGGATCGAGAAGGCACACCTATGGAGAAGCATTCTTATTCGGCCCATAACTTTTGNNNNNNNNNNNGGCACGGTTTTGCCGCAGGGTTTTTCTGCACATTTGGGCACGGTCATGAGGGGGCGGAGCCTAAATTGCAACCCTGGCACGGTTTTGCCGCACGGTTTTTTTTCGACTCCGCCCACTTTCCCCGG</canonical>
            <polymorphic>AAGACAGTTCAGTTCGCAAATAAATTGTTATCTCCATTTTTTGGAGTTTGAAAAATATTGTTCATACTTACACATATCATTCCGGACCGAACTTTCTGCATCATATTTCCGTCTTCACTCCGAACAAATCCCTCAAGTATGACACCAGAGTCTACAAACTGAAAACACTTGATTTCTTTCCATTTACCTAAATATTAGTTATTTTTACCTGAATGGACCATAAATTGAGTCGAACGATATCCATATCAAGTACATTTTGTACTCGAACAGGAACGACATTTCTGTCTCCCATTTTTTTTCACAAAATGAGGTTTTATAACAAAAATATGGCGTTCCTATTGTAAAATCAAGCTGACAATCCAAAGGCAAACAAGAAAACGGTTTTGATTTCTTTACCATTCAAATGCGAAAAATTGGCGGCAAAATCGGTGTGCGGTGGAGCGCACTTCAAGAGAAGGCATTTTGCCGATGAGACCCCGCAATTTCCGGGGAAAAACACKACAGCTTATGCCCTATGTATGGCCTTGGCTTCGCATAGAACTCTGCCAAGCTTGCCAACGCCAGATCACTCTGGTTCAATGTCGGGGCGCTAAATCACTTGCATACGACTTGGTCTCTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTCTTATACTGCGATCTGTTGAGACTATCCTTTGATTGAGTTTTTTGTTTCCCTTTTTTTTGCCACATGTAGAATCACTTTTAAGTCTACGAAATCTACGTCCCGACTTTCGACTGAGCCTAACCACTAGTAGTAAGCCACGTAAGTAGCCAACACATCAAGGATCGAGAAGGCACACCTATGGAGAAGCATTCTTATTCGGCCCATAACTTTTGNNNNNNNNNNNGGCACGGTTTTGCCGCAGGGTTTTTCTGCACATTTGGGCACGGTCATGAGGGGGCGGAGCCTAAATTGCAACCCTGGCACGGTTTTGCCGCACGGTTTTTTTTCGACTCCGCCCACTTTCCCCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTCAAGAGAAGGCATTTTG</pcr_primer_p1>
		<pcr_primer_p2>AACTCAATCAAAGGATAGTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTTCAAGAGAAGGCATTTTGCCGATGAGACCCCGCAATTTCCGGGGAAAAACACTACAGCTTATGCCCTATGTATGGCCTTGGCTTCGCATAGAACTCTGCCAAGCTTGCCAACGCCAGATCACTCTGGTTCAATGTCGGGGCGCTAAATCACTTGCATACGACTTGGTCTCTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTCTTATACTGCGATCTGTTGAGACTATCCTTTGATTGAGTT</canonical_amplicon>
		<polymorphic_amplicon>ACTTCAAGAGAAGGCATTTTGCCGATGAGACCCCGCAATTTCCGGGGAAAAACACKACAGCTTATGCCCTATGTATGGCCTTGGCTTCGCATAGAACTCTGCCAAGCTTGCCAACGCCAGATCACTCTGGTTCAATGTCGGGGCGCTAAATCACTTGCATACGACTTGGTCTCTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTCTTATACTGCGATCTGTTGAGACTATCCTTTGATTGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24085</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>888806</contig_pos>
        <strand></strand>
        <context>AAAAACACKA[C/G]AGCTTATGCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAGAAGGCATTTTGCCGATGAGACCCCGCAATTTCCGGGGAAAAACACTA</left_flank>
        <right_flank>AGCTTATGCCCTATGTATGGCCTTGGCTTCGCATAGAACTCTGCCAAGCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACAGTTCAGTTCGCAAATAAATTGTTATCTCCATTTTTTGGAGTTTGAAAAATATTGTTCATACTTACACATATCATTCCGGACCGAACTTTCTGCATCATATTTCCGTCTTCACTCCGAACAAATCCCTCAAGTATGACACCAGAGTCTACAAACTGAAAACACTTGATTTCTTTCCATTTACCTAAATATTAGTTATTTTTACCTGAATGGACCATAAATTGAGTCGAACGATATCCATATCAAGTACATTTTGTACTCGAACAGGAACGACATTTCTGTCTCCCATTTTTTTTCACAAAATGAGGTTTTATAACAAAAATATGGCGTTCCTATTGTAAAATCAAGCTGACAATCCAAAGGCAAACAAGAAAACGGTTTTGATTTCTTTACCATTCAAATGCGAAAAATTGGCGGCAAAATCGGTGTGCGGTGGAGCGCACTTCAAGAGAAGGCATTTTGCCGATGAGACCCCGCAATTTCCGGGGAAAAACACTACAGCTTATGCCCTATGTATGGCCTTGGCTTCGCATAGAACTCTGCCAAGCTTGCCAACGCCAGATCACTCTGGTTCAATGTCGGGGCGCTAAATCACTTGCATACGACTTGGTCTCTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTCTTATACTGCGATCTGTTGAGACTATCCTTTGATTGAGTTTTTTGTTTCCCTTTTTTTTGCCACATGTAGAATCACTTTTAAGTCTACGAAATCTACGTCCCGACTTTCGACTGAGCCTAACCACTAGTAGTAAGCCACGTAAGTAGCCAACACATCAAGGATCGAGAAGGCACACCTATGGAGAAGCATTCTTATTCGGCCCATAACTTTTGNNNNNNNNNNNGGCACGGTTTTGCCGCAGGGTTTTTCTGCACATTTGGGCACGGTCATGAGGGGGCGGAGCCTAAATTGCAACCCTGGCACGGTTTTGCCGCACGGTTTTTTTTCGACTCCGCCCACTTTCCCCGGTT</canonical>
            <polymorphic>GACAGTTCAGTTCGCAAATAAATTGTTATCTCCATTTTTTGGAGTTTGAAAAATATTGTTCATACTTACACATATCATTCCGGACCGAACTTTCTGCATCATATTTCCGTCTTCACTCCGAACAAATCCCTCAAGTATGACACCAGAGTCTACAAACTGAAAACACTTGATTTCTTTCCATTTACCTAAATATTAGTTATTTTTACCTGAATGGACCATAAATTGAGTCGAACGATATCCATATCAAGTACATTTTGTACTCGAACAGGAACGACATTTCTGTCTCCCATTTTTTTTCACAAAATGAGGTTTTATAACAAAAATATGGCGTTCCTATTGTAAAATCAAGCTGACAATCCAAAGGCAAACAAGAAAACGGTTTTGATTTCTTTACCATTCAAATGCGAAAAATTGGCGGCAAAATCGGTGTGCGGTGGAGCGCACTTCAAGAGAAGGCATTTTGCCGATGAGACCCCGCAATTTCCGGGGAAAAACACTASAGCTTATGCCCTATGTATGGCCTTGGCTTCGCATAGAACTCTGCCAAGCTTGCCAACGCCAGATCACTCTGGTTCAATGTCGGGGCGCTAAATCACTTGCATACGACTTGGTCTCTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTCTTATACTGCGATCTGTTGAGACTATCCTTTGATTGAGTTTTTTGTTTCCCTTTTTTTTGCCACATGTAGAATCACTTTTAAGTCTACGAAATCTACGTCCCGACTTTCGACTGAGCCTAACCACTAGTAGTAAGCCACGTAAGTAGCCAACACATCAAGGATCGAGAAGGCACACCTATGGAGAAGCATTCTTATTCGGCCCATAACTTTTGNNNNNNNNNNNGGCACGGTTTTGCCGCAGGGTTTTTCTGCACATTTGGGCACGGTCATGAGGGGGCGGAGCCTAAATTGCAACCCTGGCACGGTTTTGCCGCACGGTTTTTTTTCGACTCCGCCCACTTTCCCCGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTCAAGAGAAGGCATTTTG</pcr_primer_p1>
		<pcr_primer_p2>AACTCAATCAAAGGATAGTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTTCAAGAGAAGGCATTTTGCCGATGAGACCCCGCAATTTCCGGGGAAAAACACTACAGCTTATGCCCTATGTATGGCCTTGGCTTCGCATAGAACTCTGCCAAGCTTGCCAACGCCAGATCACTCTGGTTCAATGTCGGGGCGCTAAATCACTTGCATACGACTTGGTCTCTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTCTTATACTGCGATCTGTTGAGACTATCCTTTGATTGAGTT</canonical_amplicon>
		<polymorphic_amplicon>ACTTCAAGAGAAGGCATTTTGCCGATGAGACCCCGCAATTTCCGGGGAAAAACACTASAGCTTATGCCCTATGTATGGCCTTGGCTTCGCATAGAACTCTGCCAAGCTTGCCAACGCCAGATCACTCTGGTTCAATGTCGGGGCGCTAAATCACTTGCATACGACTTGGTCTCTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTCTTATACTGCGATCTGTTGAGACTATCCTTTGATTGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24086</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>888838</contig_pos>
        <strand></strand>
        <context>CTTGGCTTCG[C/T]AKWGAACTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCGGGGAAAAACACTACAGCTTATGCCCTATGTATGGCCTTGGCTTCG</left_flank>
        <right_flank>ATAGAACTCTGCCAAGCTTGCCAACGCCAGATCACTCTGGTTCAATGTCG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTTTTGGAGTTTGAAAAATATTGTTCATACTTACACATATCATTCCGGACCGAACTTTCTGCATCATATTTCCGTCTTCACTCCGAACAAATCCCTCAAGTATGACACCAGAGTCTACAAACTGAAAACACTTGATTTCTTTCCATTTACCTAAATATTAGTTATTTTTACCTGAATGGACCATAAATTGAGTCGAACGATATCCATATCAAGTACATTTTGTACTCGAACAGGAACGACATTTCTGTCTCCCATTTTTTTTCACAAAATGAGGTTTTATAACAAAAATATGGCGTTCCTATTGTAAAATCAAGCTGACAATCCAAAGGCAAACAAGAAAACGGTTTTGATTTCTTTACCATTCAAATGCGAAAAATTGGCGGCAAAATCGGTGTGCGGTGGAGCGCACTTCAAGAGAAGGCATTTTGCCGATGAGACCCCGCAATTTCCGGGGAAAAACACTACAGCTTATGCCCTATGTATGGCCTTGGCTTCGCATAGAACTCTGCCAAGCTTGCCAACGCCAGATCACTCTGGTTCAATGTCGGGGCGCTAAATCACTTGCATACGACTTGGTCTCTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTCTTATACTGCGATCTGTTGAGACTATCCTTTGATTGAGTTTTTTGTTTCCCTTTTTTTTGCCACATGTAGAATCACTTTTAAGTCTACGAAATCTACGTCCCGACTTTCGACTGAGCCTAACCACTAGTAGTAAGCCACGTAAGTAGCCAACACATCAAGGATCGAGAAGGCACACCTATGGAGAAGCATTCTTATTCGGCCCATAACTTTTGNNNNNNNNNNNGGCACGGTTTTGCCGCAGGGTTTTTCTGCACATTTGGGCACGGTCATGAGGGGGCGGAGCCTAAATTGCAACCCTGGCACGGTTTTGCCGCACGGTTTTTTTTCGACTCCGCCCACTTTCCCCGGTTTTTTTTCCCCGATTTTTTTTTCCCCAGAAATT</canonical>
            <polymorphic>CATTTTTTGGAGTTTGAAAAATATTGTTCATACTTACACATATCATTCCGGACCGAACTTTCTGCATCATATTTCCGTCTTCACTCCGAACAAATCCCTCAAGTATGACACCAGAGTCTACAAACTGAAAACACTTGATTTCTTTCCATTTACCTAAATATTAGTTATTTTTACCTGAATGGACCATAAATTGAGTCGAACGATATCCATATCAAGTACATTTTGTACTCGAACAGGAACGACATTTCTGTCTCCCATTTTTTTTCACAAAATGAGGTTTTATAACAAAAATATGGCGTTCCTATTGTAAAATCAAGCTGACAATCCAAAGGCAAACAAGAAAACGGTTTTGATTTCTTTACCATTCAAATGCGAAAAATTGGCGGCAAAATCGGTGTGCGGTGGAGCGCACTTCAAGAGAAGGCATTTTGCCGATGAGACCCCGCAATTTCCGGGGAAAAACACTACAGCTTATGCCCTATGTATGGCCTTGGCTTCGYATAGAACTCTGCCAAGCTTGCCAACGCCAGATCACTCTGGTTCAATGTCGGGGCGCTAAATCACTTGCATACGACTTGGTCTCTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTCTTATACTGCGATCTGTTGAGACTATCCTTTGATTGAGTTTTTTGTTTCCCTTTTTTTTGCCACATGTAGAATCACTTTTAAGTCTACGAAATCTACGTCCCGACTTTCGACTGAGCCTAACCACTAGTAGTAAGCCACGTAAGTAGCCAACACATCAAGGATCGAGAAGGCACACCTATGGAGAAGCATTCTTATTCGGCCCATAACTTTTGNNNNNNNNNNNGGCACGGTTTTGCCGCAGGGTTTTTCTGCACATTTGGGCACGGTCATGAGGGGGCGGAGCCTAAATTGCAACCCTGGCACGGTTTTGCCGCACGGTTTTTTTTCGACTCCGCCCACTTTCCCCGGTTTTTTTTCCCCGATTTTTTTTTCCCCAGAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTCAAGAGAAGGCATTTTG</pcr_primer_p1>
		<pcr_primer_p2>AACTCAATCAAAGGATAGTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTTCAAGAGAAGGCATTTTGCCGATGAGACCCCGCAATTTCCGGGGAAAAACACTACAGCTTATGCCCTATGTATGGCCTTGGCTTCGCATAGAACTCTGCCAAGCTTGCCAACGCCAGATCACTCTGGTTCAATGTCGGGGCGCTAAATCACTTGCATACGACTTGGTCTCTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTCTTATACTGCGATCTGTTGAGACTATCCTTTGATTGAGTT</canonical_amplicon>
		<polymorphic_amplicon>ACTTCAAGAGAAGGCATTTTGCCGATGAGACCCCGCAATTTCCGGGGAAAAACACTACAGCTTATGCCCTATGTATGGCCTTGGCTTCGYATAGAACTCTGCCAAGCTTGCCAACGCCAGATCACTCTGGTTCAATGTCGGGGCGCTAAATCACTTGCATACGACTTGGTCTCTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTCTTATACTGCGATCTGTTGAGACTATCCTTTGATTGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24087</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>888840</contig_pos>
        <strand></strand>
        <context>TGGCTTCGYA[T/G]WGAACTCTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CCGGGGAAAAACACTACAGCTTATGCCCTATGTATGGCCTTGGCTTCGCA</left_flank>
        <right_flank>AGAACTCTGCCAAGCTTGCCAACGCCAGATCACTCTGGTTCAATGTCGGG</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTGGAGTTTGAAAAATATTGTTCATACTTACACATATCATTCCGGACCGAACTTTCTGCATCATATTTCCGTCTTCACTCCGAACAAATCCCTCAAGTATGACACCAGAGTCTACAAACTGAAAACACTTGATTTCTTTCCATTTACCTAAATATTAGTTATTTTTACCTGAATGGACCATAAATTGAGTCGAACGATATCCATATCAAGTACATTTTGTACTCGAACAGGAACGACATTTCTGTCTCCCATTTTTTTTCACAAAATGAGGTTTTATAACAAAAATATGGCGTTCCTATTGTAAAATCAAGCTGACAATCCAAAGGCAAACAAGAAAACGGTTTTGATTTCTTTACCATTCAAATGCGAAAAATTGGCGGCAAAATCGGTGTGCGGTGGAGCGCACTTCAAGAGAAGGCATTTTGCCGATGAGACCCCGCAATTTCCGGGGAAAAACACTACAGCTTATGCCCTATGTATGGCCTTGGCTTCGCATAGAACTCTGCCAAGCTTGCCAACGCCAGATCACTCTGGTTCAATGTCGGGGCGCTAAATCACTTGCATACGACTTGGTCTCTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTCTTATACTGCGATCTGTTGAGACTATCCTTTGATTGAGTTTTTTGTTTCCCTTTTTTTTGCCACATGTAGAATCACTTTTAAGTCTACGAAATCTACGTCCCGACTTTCGACTGAGCCTAACCACTAGTAGTAAGCCACGTAAGTAGCCAACACATCAAGGATCGAGAAGGCACACCTATGGAGAAGCATTCTTATTCGGCCCATAACTTTTGNNNNNNNNNNNGGCACGGTTTTGCCGCAGGGTTTTTCTGCACATTTGGGCACGGTCATGAGGGGGCGGAGCCTAAATTGCAACCCTGGCACGGTTTTGCCGCACGGTTTTTTTTCGACTCCGCCCACTTTCCCCGGTTTTTTTTCCCCGATTTTTTTTTCCCCAGAAATTGC</canonical>
            <polymorphic>TTTTTTGGAGTTTGAAAAATATTGTTCATACTTACACATATCATTCCGGACCGAACTTTCTGCATCATATTTCCGTCTTCACTCCGAACAAATCCCTCAAGTATGACACCAGAGTCTACAAACTGAAAACACTTGATTTCTTTCCATTTACCTAAATATTAGTTATTTTTACCTGAATGGACCATAAATTGAGTCGAACGATATCCATATCAAGTACATTTTGTACTCGAACAGGAACGACATTTCTGTCTCCCATTTTTTTTCACAAAATGAGGTTTTATAACAAAAATATGGCGTTCCTATTGTAAAATCAAGCTGACAATCCAAAGGCAAACAAGAAAACGGTTTTGATTTCTTTACCATTCAAATGCGAAAAATTGGCGGCAAAATCGGTGTGCGGTGGAGCGCACTTCAAGAGAAGGCATTTTGCCGATGAGACCCCGCAATTTCCGGGGAAAAACACTACAGCTTATGCCCTATGTATGGCCTTGGCTTCGCAKAGAACTCTGCCAAGCTTGCCAACGCCAGATCACTCTGGTTCAATGTCGGGGCGCTAAATCACTTGCATACGACTTGGTCTCTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTCTTATACTGCGATCTGTTGAGACTATCCTTTGATTGAGTTTTTTGTTTCCCTTTTTTTTGCCACATGTAGAATCACTTTTAAGTCTACGAAATCTACGTCCCGACTTTCGACTGAGCCTAACCACTAGTAGTAAGCCACGTAAGTAGCCAACACATCAAGGATCGAGAAGGCACACCTATGGAGAAGCATTCTTATTCGGCCCATAACTTTTGNNNNNNNNNNNGGCACGGTTTTGCCGCAGGGTTTTTCTGCACATTTGGGCACGGTCATGAGGGGGCGGAGCCTAAATTGCAACCCTGGCACGGTTTTGCCGCACGGTTTTTTTTCGACTCCGCCCACTTTCCCCGGTTTTTTTTCCCCGATTTTTTTTTCCCCAGAAATTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTCAAGAGAAGGCATTTTG</pcr_primer_p1>
		<pcr_primer_p2>AACTCAATCAAAGGATAGTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTTCAAGAGAAGGCATTTTGCCGATGAGACCCCGCAATTTCCGGGGAAAAACACTACAGCTTATGCCCTATGTATGGCCTTGGCTTCGCATAGAACTCTGCCAAGCTTGCCAACGCCAGATCACTCTGGTTCAATGTCGGGGCGCTAAATCACTTGCATACGACTTGGTCTCTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTCTTATACTGCGATCTGTTGAGACTATCCTTTGATTGAGTT</canonical_amplicon>
		<polymorphic_amplicon>ACTTCAAGAGAAGGCATTTTGCCGATGAGACCCCGCAATTTCCGGGGAAAAACACTACAGCTTATGCCCTATGTATGGCCTTGGCTTCGCAKAGAACTCTGCCAAGCTTGCCAACGCCAGATCACTCTGGTTCAATGTCGGGGCGCTAAATCACTTGCATACGACTTGGTCTCTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTCTTATACTGCGATCTGTTGAGACTATCCTTTGATTGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24088</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>888841</contig_pos>
        <strand></strand>
        <context>GGCTTCGYAK[A/T]GAACTCTGCS</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGGGGAAAAACACTACAGCTTATGCCCTATGTATGGCCTTGGCTTCGCAT</left_flank>
        <right_flank>GAACTCTGCCAAGCTTGCCAACGCCAGATCACTCTGGTTCAATGTCGGGG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGGAGTTTGAAAAATATTGTTCATACTTACACATATCATTCCGGACCGAACTTTCTGCATCATATTTCCGTCTTCACTCCGAACAAATCCCTCAAGTATGACACCAGAGTCTACAAACTGAAAACACTTGATTTCTTTCCATTTACCTAAATATTAGTTATTTTTACCTGAATGGACCATAAATTGAGTCGAACGATATCCATATCAAGTACATTTTGTACTCGAACAGGAACGACATTTCTGTCTCCCATTTTTTTTCACAAAATGAGGTTTTATAACAAAAATATGGCGTTCCTATTGTAAAATCAAGCTGACAATCCAAAGGCAAACAAGAAAACGGTTTTGATTTCTTTACCATTCAAATGCGAAAAATTGGCGGCAAAATCGGTGTGCGGTGGAGCGCACTTCAAGAGAAGGCATTTTGCCGATGAGACCCCGCAATTTCCGGGGAAAAACACTACAGCTTATGCCCTATGTATGGCCTTGGCTTCGCATAGAACTCTGCCAAGCTTGCCAACGCCAGATCACTCTGGTTCAATGTCGGGGCGCTAAATCACTTGCATACGACTTGGTCTCTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTCTTATACTGCGATCTGTTGAGACTATCCTTTGATTGAGTTTTTTGTTTCCCTTTTTTTTGCCACATGTAGAATCACTTTTAAGTCTACGAAATCTACGTCCCGACTTTCGACTGAGCCTAACCACTAGTAGTAAGCCACGTAAGTAGCCAACACATCAAGGATCGAGAAGGCACACCTATGGAGAAGCATTCTTATTCGGCCCATAACTTTTGNNNNNNNNNNNGGCACGGTTTTGCCGCAGGGTTTTTCTGCACATTTGGGCACGGTCATGAGGGGGCGGAGCCTAAATTGCAACCCTGGCACGGTTTTGCCGCACGGTTTTTTTTCGACTCCGCCCACTTTCCCCGGTTTTTTTTCCCCGATTTTTTTTTCCCCAGAAATTGCG</canonical>
            <polymorphic>TTTTTGGAGTTTGAAAAATATTGTTCATACTTACACATATCATTCCGGACCGAACTTTCTGCATCATATTTCCGTCTTCACTCCGAACAAATCCCTCAAGTATGACACCAGAGTCTACAAACTGAAAACACTTGATTTCTTTCCATTTACCTAAATATTAGTTATTTTTACCTGAATGGACCATAAATTGAGTCGAACGATATCCATATCAAGTACATTTTGTACTCGAACAGGAACGACATTTCTGTCTCCCATTTTTTTTCACAAAATGAGGTTTTATAACAAAAATATGGCGTTCCTATTGTAAAATCAAGCTGACAATCCAAAGGCAAACAAGAAAACGGTTTTGATTTCTTTACCATTCAAATGCGAAAAATTGGCGGCAAAATCGGTGTGCGGTGGAGCGCACTTCAAGAGAAGGCATTTTGCCGATGAGACCCCGCAATTTCCGGGGAAAAACACTACAGCTTATGCCCTATGTATGGCCTTGGCTTCGCATWGAACTCTGCCAAGCTTGCCAACGCCAGATCACTCTGGTTCAATGTCGGGGCGCTAAATCACTTGCATACGACTTGGTCTCTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTCTTATACTGCGATCTGTTGAGACTATCCTTTGATTGAGTTTTTTGTTTCCCTTTTTTTTGCCACATGTAGAATCACTTTTAAGTCTACGAAATCTACGTCCCGACTTTCGACTGAGCCTAACCACTAGTAGTAAGCCACGTAAGTAGCCAACACATCAAGGATCGAGAAGGCACACCTATGGAGAAGCATTCTTATTCGGCCCATAACTTTTGNNNNNNNNNNNGGCACGGTTTTGCCGCAGGGTTTTTCTGCACATTTGGGCACGGTCATGAGGGGGCGGAGCCTAAATTGCAACCCTGGCACGGTTTTGCCGCACGGTTTTTTTTCGACTCCGCCCACTTTCCCCGGTTTTTTTTCCCCGATTTTTTTTTCCCCAGAAATTGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTCAAGAGAAGGCATTTTG</pcr_primer_p1>
		<pcr_primer_p2>AACTCAATCAAAGGATAGTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTTCAAGAGAAGGCATTTTGCCGATGAGACCCCGCAATTTCCGGGGAAAAACACTACAGCTTATGCCCTATGTATGGCCTTGGCTTCGCATAGAACTCTGCCAAGCTTGCCAACGCCAGATCACTCTGGTTCAATGTCGGGGCGCTAAATCACTTGCATACGACTTGGTCTCTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTCTTATACTGCGATCTGTTGAGACTATCCTTTGATTGAGTT</canonical_amplicon>
		<polymorphic_amplicon>ACTTCAAGAGAAGGCATTTTGCCGATGAGACCCCGCAATTTCCGGGGAAAAACACTACAGCTTATGCCCTATGTATGGCCTTGGCTTCGCATWGAACTCTGCCAAGCTTGCCAACGCCAGATCACTCTGGTTCAATGTCGGGGCGCTAAATCACTTGCATACGACTTGGTCTCTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTCTTATACTGCGATCTGTTGAGACTATCCTTTGATTGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24089</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>888851</contig_pos>
        <strand></strand>
        <context>WGAACTCTGC[C/G]AAGCTTGCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CACTACAGCTTATGCCCTATGTATGGCCTTGGCTTCGCATAGAACTCTGC</left_flank>
        <right_flank>AAGCTTGCCAACGCCAGATCACTCTGGTTCAATGTCGGGGCGCTAAATCA</right_flank>
        <qual_score>46</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAAAATATTGTTCATACTTACACATATCATTCCGGACCGAACTTTCTGCATCATATTTCCGTCTTCACTCCGAACAAATCCCTCAAGTATGACACCAGAGTCTACAAACTGAAAACACTTGATTTCTTTCCATTTACCTAAATATTAGTTATTTTTACCTGAATGGACCATAAATTGAGTCGAACGATATCCATATCAAGTACATTTTGTACTCGAACAGGAACGACATTTCTGTCTCCCATTTTTTTTCACAAAATGAGGTTTTATAACAAAAATATGGCGTTCCTATTGTAAAATCAAGCTGACAATCCAAAGGCAAACAAGAAAACGGTTTTGATTTCTTTACCATTCAAATGCGAAAAATTGGCGGCAAAATCGGTGTGCGGTGGAGCGCACTTCAAGAGAAGGCATTTTGCCGATGAGACCCCGCAATTTCCGGGGAAAAACACTACAGCTTATGCCCTATGTATGGCCTTGGCTTCGCATAGAACTCTGCCAAGCTTGCCAACGCCAGATCACTCTGGTTCAATGTCGGGGCGCTAAATCACTTGCATACGACTTGGTCTCTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTCTTATACTGCGATCTGTTGAGACTATCCTTTGATTGAGTTTTTTGTTTCCCTTTTTTTTGCCACATGTAGAATCACTTTTAAGTCTACGAAATCTACGTCCCGACTTTCGACTGAGCCTAACCACTAGTAGTAAGCCACGTAAGTAGCCAACACATCAAGGATCGAGAAGGCACACCTATGGAGAAGCATTCTTATTCGGCCCATAACTTTTGNNNNNNNNNNNGGCACGGTTTTGCCGCAGGGTTTTTCTGCACATTTGGGCACGGTCATGAGGGGGCGGAGCCTAAATTGCAACCCTGGCACGGTTTTGCCGCACGGTTTTTTTTCGACTCCGCCCACTTTCCCCGGTTTTTTTTCCCCGATTTTTTTTTCCCCAGAAATTGCGGGGTCTCTTT</canonical>
            <polymorphic>TTGAAAAATATTGTTCATACTTACACATATCATTCCGGACCGAACTTTCTGCATCATATTTCCGTCTTCACTCCGAACAAATCCCTCAAGTATGACACCAGAGTCTACAAACTGAAAACACTTGATTTCTTTCCATTTACCTAAATATTAGTTATTTTTACCTGAATGGACCATAAATTGAGTCGAACGATATCCATATCAAGTACATTTTGTACTCGAACAGGAACGACATTTCTGTCTCCCATTTTTTTTCACAAAATGAGGTTTTATAACAAAAATATGGCGTTCCTATTGTAAAATCAAGCTGACAATCCAAAGGCAAACAAGAAAACGGTTTTGATTTCTTTACCATTCAAATGCGAAAAATTGGCGGCAAAATCGGTGTGCGGTGGAGCGCACTTCAAGAGAAGGCATTTTGCCGATGAGACCCCGCAATTTCCGGGGAAAAACACTACAGCTTATGCCCTATGTATGGCCTTGGCTTCGCATAGAACTCTGCSAAGCTTGCCAACGCCAGATCACTCTGGTTCAATGTCGGGGCGCTAAATCACTTGCATACGACTTGGTCTCTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTCTTATACTGCGATCTGTTGAGACTATCCTTTGATTGAGTTTTTTGTTTCCCTTTTTTTTGCCACATGTAGAATCACTTTTAAGTCTACGAAATCTACGTCCCGACTTTCGACTGAGCCTAACCACTAGTAGTAAGCCACGTAAGTAGCCAACACATCAAGGATCGAGAAGGCACACCTATGGAGAAGCATTCTTATTCGGCCCATAACTTTTGNNNNNNNNNNNGGCACGGTTTTGCCGCAGGGTTTTTCTGCACATTTGGGCACGGTCATGAGGGGGCGGAGCCTAAATTGCAACCCTGGCACGGTTTTGCCGCACGGTTTTTTTTCGACTCCGCCCACTTTCCCCGGTTTTTTTTCCCCGATTTTTTTTTCCCCAGAAATTGCGGGGTCTCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTCAAGAGAAGGCATTTTG</pcr_primer_p1>
		<pcr_primer_p2>AACTCAATCAAAGGATAGTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTTCAAGAGAAGGCATTTTGCCGATGAGACCCCGCAATTTCCGGGGAAAAACACTACAGCTTATGCCCTATGTATGGCCTTGGCTTCGCATAGAACTCTGCCAAGCTTGCCAACGCCAGATCACTCTGGTTCAATGTCGGGGCGCTAAATCACTTGCATACGACTTGGTCTCTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTCTTATACTGCGATCTGTTGAGACTATCCTTTGATTGAGTT</canonical_amplicon>
		<polymorphic_amplicon>ACTTCAAGAGAAGGCATTTTGCCGATGAGACCCCGCAATTTCCGGGGAAAAACACTACAGCTTATGCCCTATGTATGGCCTTGGCTTCGCATAGAACTCTGCSAAGCTTGCCAACGCCAGATCACTCTGGTTCAATGTCGGGGCGCTAAATCACTTGCATACGACTTGGTCTCTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTCTTATACTGCGATCTGTTGAGACTATCCTTTGATTGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24090</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>889081</contig_pos>
        <strand></strand>
        <context>GCCTAACCAC[T/A]AGTAGTAAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CTTTTAAGTCTACGAAATCTACGTCCCGACTTTCGACTGAGCCTAACCAC</left_flank>
        <right_flank>AGTAGTAAGCCACGTAAGTAGCCAACACATCAAGGATCGAGAAGGCACAC</right_flank>
        <qual_score>49</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCTGTCTCCCATTTTTTTTCACAAAATGAGGTTTTATAACAAAAATATGGCGTTCCTATTGTAAAATCAAGCTGACAATCCAAAGGCAAACAAGAAAACGGTTTTGATTTCTTTACCATTCAAATGCGAAAAATTGGCGGCAAAATCGGTGTGCGGTGGAGCGCACTTCAAGAGAAGGCATTTTGCCGATGAGACCCCGCAATTTCCGGGGAAAAACACTACAGCTTATGCCCTATGTATGGCCTTGGCTTCGCATAGAACTCTGCCAAGCTTGCCAACGCCAGATCACTCTGGTTCAATGTCGGGGCGCTAAATCACTTGCATACGACTTGGTCTCTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTCTTATACTGCGATCTGTTGAGACTATCCTTTGATTGAGTTTTTTGTTTCCCTTTTTTTTGCCACATGTAGAATCACTTTTAAGTCTACGAAATCTACGTCCCGACTTTCGACTGAGCCTAACCACTAGTAGTAAGCCACGTAAGTAGCCAACACATCAAGGATCGAGAAGGCACACCTATGGAGAAGCATTCTTATTCGGCCCATAACTTTTGNNNNNNNNNNNGGCACGGTTTTGCCGCAGGGTTTTTCTGCACATTTGGGCACGGTCATGAGGGGGCGGAGCCTAAATTGCAACCCTGGCACGGTTTTGCCGCACGGTTTTTTTTCGACTCCGCCCACTTTCCCCGGTTTTTTTTCCCCGATTTTTTTTTCCCCAGAAATTGCGGGGTCTCTTTGCCGATTTGTCGACGATTTCTCGGCCTATCCGAGTTTTTTTCTGACAAAGATTAGCCTTTTAAATTTTTTGACACATTTTGTTTTTTTTTTATTTGGCTTGAAGCTTTCTCTTCGTTTTGGGCGTAGTCCTTCATGAAGTTCGATCCATAATTCACAAAAAAGAGATAATTCATAATTTTGTTTTTCATTTTTTATATTGAAAGTATCAAATGTCGTTCATACTGTTTCA</canonical>
            <polymorphic>ATTTCTGTCTCCCATTTTTTTTCACAAAATGAGGTTTTATAACAAAAATATGGCGTTCCTATTGTAAAATCAAGCTGACAATCCAAAGGCAAACAAGAAAACGGTTTTGATTTCTTTACCATTCAAATGCGAAAAATTGGCGGCAAAATCGGTGTGCGGTGGAGCGCACTTCAAGAGAAGGCATTTTGCCGATGAGACCCCGCAATTTCCGGGGAAAAACACTACAGCTTATGCCCTATGTATGGCCTTGGCTTCGCATAGAACTCTGCCAAGCTTGCCAACGCCAGATCACTCTGGTTCAATGTCGGGGCGCTAAATCACTTGCATACGACTTGGTCTCTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTCTTATACTGCGATCTGTTGAGACTATCCTTTGATTGAGTTTTTTGTTTCCCTTTTTTTTGCCACATGTAGAATCACTTTTAAGTCTACGAAATCTACGTCCCGACTTTCGACTGAGCCTAACCACWAGTAGTAAGCCACGTAAGTAGCCAACACATCAAGGATCGAGAAGGCACACCTATGGAGAAGCATTCTTATTCGGCCCATAACTTTTGNNNNNNNNNNNGGCACGGTTTTGCCGCAGGGTTTTTCTGCACATTTGGGCACGGTCATGAGGGGGCGGAGCCTAAATTGCAACCCTGGCACGGTTTTGCCGCACGGTTTTTTTTCGACTCCGCCCACTTTCCCCGGTTTTTTTTCCCCGATTTTTTTTTCCCCAGAAATTGCGGGGTCTCTTTGCCGATTTGTCGACGATTTCTCGGCCTATCCGAGTTTTTTTCTGACAAAGATTAGCCTTTTAAATTTTTTGACACATTTTGTTTTTTTTTTATTTGGCTTGAAGCTTTCTCTTCGTTTTGGGCGTAGTCCTTCATGAAGTTCGATCCATAATTCACAAAAAAGAGATAATTCATAATTTTGTTTTTCATTTTTTATATTGAAAGTATCAAATGTCGTTCATACTGTTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACTAGT</site>
                <isoschizomers>
                    <enzyme>AhlI</enzyme>
                    <enzyme>BcuI</enzyme>
                    <enzyme>SpeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACGACTTGGTCTCTTGGTC</pcr_primer_p1>
		<pcr_primer_p2>AATAAGAATGCTTCTCCATAGGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATACGACTTGGTCTCTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTCTTATACTGCGATCTGTTGAGACTATCCTTTGATTGAGTTTTTTGTTTCCCTTTTTTTTGCCACATGTAGAATCACTTTTAAGTCTACGAAATCTACGTCCCGACTTTCGACTGAGCCTAACCACTAGTAGTAAGCCACGTAAGTAGCCAACACATCAAGGATCGAGAAGGCACACCTATGGAGAAGCATTCTTATT</canonical_amplicon>
		<polymorphic_amplicon>ATACGACTTGGTCTCTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTCTTATACTGCGATCTGTTGAGACTATCCTTTGATTGAGTTTTTTGTTTCCCTTTTTTTTGCCACATGTAGAATCACTTTTAAGTCTACGAAATCTACGTCCCGACTTTCGACTGAGCCTAACCACWAGTAGTAAGCCACGTAAGTAGCCAACACATCAAGGATCGAGAAGGCACACCTATGGAGAAGCATTCTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24091</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>889111</contig_pos>
        <strand></strand>
        <context>AGCCAACACA[T/A]CAAGGATCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTCGACTGAGCCTAACCACTAGTAGTAAGCCACGTAAGTAGCCAACACA</left_flank>
        <right_flank>CAAGGATCGAGAAGGCACACCTATGGAGAAGCATTCTTATTCGGCCCATA</right_flank>
        <qual_score>46</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGTTTTATAACAAAAATATGGCGTTCCTATTGTAAAATCAAGCTGACAATCCAAAGGCAAACAAGAAAACGGTTTTGATTTCTTTACCATTCAAATGCGAAAAATTGGCGGCAAAATCGGTGTGCGGTGGAGCGCACTTCAAGAGAAGGCATTTTGCCGATGAGACCCCGCAATTTCCGGGGAAAAACACTACAGCTTATGCCCTATGTATGGCCTTGGCTTCGCATAGAACTCTGCCAAGCTTGCCAACGCCAGATCACTCTGGTTCAATGTCGGGGCGCTAAATCACTTGCATACGACTTGGTCTCTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTCTTATACTGCGATCTGTTGAGACTATCCTTTGATTGAGTTTTTTGTTTCCCTTTTTTTTGCCACATGTAGAATCACTTTTAAGTCTACGAAATCTACGTCCCGACTTTCGACTGAGCCTAACCACTAGTAGTAAGCCACGTAAGTAGCCAACACATCAAGGATCGAGAAGGCACACCTATGGAGAAGCATTCTTATTCGGCCCATAACTTTTGNNNNNNNNNNNGGCACGGTTTTGCCGCAGGGTTTTTCTGCACATTTGGGCACGGTCATGAGGGGGCGGAGCCTAAATTGCAACCCTGGCACGGTTTTGCCGCACGGTTTTTTTTCGACTCCGCCCACTTTCCCCGGTTTTTTTTCCCCGATTTTTTTTTCCCCAGAAATTGCGGGGTCTCTTTGCCGATTTGTCGACGATTTCTCGGCCTATCCGAGTTTTTTTCTGACAAAGATTAGCCTTTTAAATTTTTTGACACATTTTGTTTTTTTTTTATTTGGCTTGAAGCTTTCTCTTCGTTTTGGGCGTAGTCCTTCATGAAGTTCGATCCATAATTCACAAAAAAGAGATAATTCATAATTTTGTTTTTCATTTTTTATATTGAAAGTATCAAATGTCGTTCATACTGTTTCAAAATTCTTGTTTTTCCCTGTCCCCAAAAGT</canonical>
            <polymorphic>GAGGTTTTATAACAAAAATATGGCGTTCCTATTGTAAAATCAAGCTGACAATCCAAAGGCAAACAAGAAAACGGTTTTGATTTCTTTACCATTCAAATGCGAAAAATTGGCGGCAAAATCGGTGTGCGGTGGAGCGCACTTCAAGAGAAGGCATTTTGCCGATGAGACCCCGCAATTTCCGGGGAAAAACACTACAGCTTATGCCCTATGTATGGCCTTGGCTTCGCATAGAACTCTGCCAAGCTTGCCAACGCCAGATCACTCTGGTTCAATGTCGGGGCGCTAAATCACTTGCATACGACTTGGTCTCTTGGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTCTTATACTGCGATCTGTTGAGACTATCCTTTGATTGAGTTTTTTGTTTCCCTTTTTTTTGCCACATGTAGAATCACTTTTAAGTCTACGAAATCTACGTCCCGACTTTCGACTGAGCCTAACCACTAGTAGTAAGCCACGTAAGTAGCCAACACAWCAAGGATCGAGAAGGCACACCTATGGAGAAGCATTCTTATTCGGCCCATAACTTTTGNNNNNNNNNNNGGCACGGTTTTGCCGCAGGGTTTTTCTGCACATTTGGGCACGGTCATGAGGGGGCGGAGCCTAAATTGCAACCCTGGCACGGTTTTGCCGCACGGTTTTTTTTCGACTCCGCCCACTTTCCCCGGTTTTTTTTCCCCGATTTTTTTTTCCCCAGAAATTGCGGGGTCTCTTTGCCGATTTGTCGACGATTTCTCGGCCTATCCGAGTTTTTTTCTGACAAAGATTAGCCTTTTAAATTTTTTGACACATTTTGTTTTTTTTTTATTTGGCTTGAAGCTTTCTCTTCGTTTTGGGCGTAGTCCTTCATGAAGTTCGATCCATAATTCACAAAAAAGAGATAATTCATAATTTTGTTTTTCATTTTTTATATTGAAAGTATCAAATGTCGTTCATACTGTTTCAAAATTCTTGTTTTTCCCTGTCCCCAAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCAAGGTGTTGTATTCAGTAG</pcr_primer_p1>
		<pcr_primer_p2>GTTATGGGCCGAATAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTCTTATACTGCGATCTGTTGAGACTATCCTTTGATTGAGTTTTTTGTTTCCCTTTTTTTTGCCACATGTAGAATCACTTTTAAGTCTACGAAATCTACGTCCCGACTTTCGACTGAGCCTAACCACTAGTAGTAAGCCACGTAAGTAGCCAACACATCAAGGATCGAGAAGGCACACCTATGGAGAAGCATTCTTATTCGGCCCATAAC</canonical_amplicon>
		<polymorphic_amplicon>GGTCAAGGTGTTGTATTCAGTAGAGCAGTCCTCTTATACTGCGATCTGTTGAGACTATCCTTTGATTGAGTTTTTTGTTTCCCTTTTTTTTGCCACATGTAGAATCACTTTTAAGTCTACGAAATCTACGTCCCGACTTTCGACTGAGCCTAACCACTAGTAGTAAGCCACGTAAGTAGCCAACACAWCAAGGATCGAGAAGGCACACCTATGGAGAAGCATTCTTATTCGGCCCATAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24092</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>925113</contig_pos>
        <strand>+</strand>
        <context>GTCAGAAATT[A/T]AAAAAAAaca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCTGTTTTCTAACTCTTTCTGCGAATAACAATTCGAAAGTCAGAAATT</left_flank>
        <right_flank>AAAAAAAACAGTAAAACCTGTAACAGAAGAGCGTCCAAACTTTCAACTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTGAGTTTCTGGGATGTTGACATAGCTCCCGATTTGCTCTGCCACGTTGTTGAGCATGCTGCTCAACATAGAGGTGGCGTACGAGAAGTAAGACATTATCTGAAATATTCGAAATCAAAACAAGAATAAGAAAACTCGCTATCAGTAAGTATAAAAAAGCAAACAAGATAGACAGGCGATTTCGTAATGAATCGAAAAAAAATAAAACAGAATATTTCGAAATATGTCGGTAGACAACGTTATGTTGTTTCTGAATAGTTGTTTCTCAATTCTCCTAGTATGTAGTATGGTTCTTTTGGGAAAAAGTGATCGACATACATTTGATTGACACTTGATAAATATGTCACTAGGCCTATAAGGGTCCGTTGGATTACTGTATGTTGATACTGCACAACAGATTAGAAATGTTGAAAAACCTATTAAATTGAAGAAGTCATGTCAGTCAACTTTTCTGTTTTCTAACTCTTTCTGCGAATAACAATTCGAAAGTCAGAAATTAAAAAAAAACAGTAAAACCTGTAACAGAAGAGCGTCCAAACTTTCAACTTCGAGCTCAACTTTCTCGGTTCCCATGAGAGATTTCAAAATTTTGTTGACAGATTTTTAACATCTCTTATAGAAATTGAGATAATTGATCTCAAAGTGTGAGTATAGGGAGCCTTCTATTTATTAGACTGTTACGGTATGTCGCAGAAAATATTCTTGAACAAAAAGACCTAATAGAGAAATACTAAAAATTCTTTTAAATGAGAGAGTAGCTTGGAAAAGAGAAAACAGTAAAACAGAGAAACTAGTCGCCTCGCCTCAAGATTTTGAAACGACAGACATTTCGAAATCTTCAGGTAGACTAAGTCTGAGTAGGTGACTCTCAATTGTTTTCTTCTCTAGGATAGAAGAATGTCTGAAAATCAATAGACAATTCAGTAATGGCTCCTGTGTGGAAAGTAGTGAACGTTTGATTGGCAGAAAGTCAATAGAGGCAACTAGGTTGACCAGGGA</canonical>
            <polymorphic>CCTGAGTTTCTGGGATGTTGACATAGCTCCCGATTTGCTCTGCCACGTTGTTGAGCATGCTGCTCAACATAGAGGTGGCGTACGAGAAGTAAGACATTATCTGAAATATTCGAAATCAAAACAAGAATAAGAAAACTCGCTATCAGTAAGTATAAAAAAGCAAACAAGATAGACAGGCGATTTCGTAATGAATCGAAAAAAAATAAAACAGAATATTTCGAAATATGTCGGTAGACAACGTTATGTTGTTTCTGAATAGTTGTTTCTCAATTCTCCTAGTATGTAGTATGGTTCTTTTGGGAAAAAGTGATCGACATACATTTGATTGACACTTGATAAATATGTCACTAGGCCTATAAGGGTCCGTTGGATTACTGTATGTTGATACTGCACAACAGATTAGAAATGTTGAAAAACCTATTAAATTGAAGAAGTCATGTCAGTCAACTTTTCTGTTTTCTAACTCTTTCTGCGAATAACAATTCGAAAGTCAGAAATTWAAAAAAAACAGTAAAACCTGTAACAGAAGAGCGTCCAAACTTTCAACTTCGAGCTCAACTTTCTCGGTTCCCATGAGAGATTTCAAAATTTTGTTGACAGATTTTTAACATCTCTTATAGAAATTGAGATAATTGATCTCAAAGTGTGAGTATAGGGAGCCTTCTATTTATTAGACTGTTACGGTATGTCGCAGAAAATATTCTTGAACAAAAAGACCTAATAGAGAAATACTAAAAATTCTTTTAAATGAGAGAGTAGCTTGGAAAAGAGAAAACAGTAAAACAGAGAAACTAGTCGCCTCGCCTCAAGATTTTGAAACGACAGACATTTCGAAATCTTCAGGTAGACTAAGTCTGAGTAGGTGACTCTCAATTGTTTTCTTCTCTAGGATAGAAGAATGTCTGAAAATCAATAGACAATTCAGTAATGGCTCCTGTGTGGAAAGTAGTGAACGTTTGATTGGCAGAAAGTCAATAGAGGCAACTAGGTTGACCAGGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>421 256 139 107 77</canonical_bands>
                <polymorphic_bands>421 256 184 139</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAGTCAACTTTTCTGTTTTCTAA</pcr_primer_p1>
		<pcr_primer_p2>GCGACATACCGTAACAGTCTA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TCAGTCAACTTTTCTGTTTTCTAACTCTTTCTGCGAATAACAATTCGAAAGTCAGAAATTAAAAAAAAACAGTAAAACCTGTAACAGAAGAGCGTCCAAACTTTCAACTTCGAGCTCAACTTTCTCGGTTCCCATGAGAGATTTCAAAATTTTGTTGACAGATTTTTAACATCTCTTATAGAAATTGAGATAATTGATCTCAAAGTGTGAGTATAGGGAGCCTTCTATTTATTAGACTGTTACGGTATGTCGC</canonical_amplicon>
		<polymorphic_amplicon>TCAGTCAACTTTTCTGTTTTCTAACTCTTTCTGCGAATAACAATTCGAAAGTCAGAAATTWAAAAAAAACAGTAAAACCTGTAACAGAAGAGCGTCCAAACTTTCAACTTCGAGCTCAACTTTCTCGGTTCCCATGAGAGATTTCAAAATTTTGTTGACAGATTTTTAACATCTCTTATAGAAATTGAGATAATTGATCTCAAAGTGTGAGTATAGGGAGCCTTCTATTTATTAGACTGTTACGGTATGTCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24093</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>929981</contig_pos>
        <strand>+</strand>
        <context>ACCTCAAGCA[A/G]TCACTGCGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGATATCTTGATATGGACTCTTGCAATTTGACAAGAATACCTCAAGCA</left_flank>
        <right_flank>TCACTGCGAATTGTCATTTGGCTCGATTAAATTTGGCCAACAACATGCTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGGGCCGACCCTTCTATTGTTCCAAGGTATCTCCAGAGGGCCCGTTCTATTTTTCCGGTCATTTCTCTACGAATGTTTTCATCTAAAAATTCGGTGAATTCTCGTTCGCAATTCATGAAAATATATCAATTTCACCAAAATTGAGCAAATTTTCGAGTTAATAAAAGTTTCAACAAATTTCTGCAAAATTGTGGACTTTCCGGAATATTTTCATTGAAAACATACGGAAATGTTCATTTTCAAACAACACATTTTGAAAAAAGCCCTTCTATTACTGAGTCCTTCTCAGTGGGCCCTTCTATTAAACGGCCCCTATGTTTCACGATAGCTCAATTCCAGACCTTATCTCCTGATCATTTCTATGGATTGGCTTCTTTGAAAACGTTATCCCTATCTCGAATGCCAATCCAAACGATTTCTCCTTATTCCTTCGTTCCTCTAAAATCGCTTCGATATCTTGATATGGACTCTTGCAATTTGACAAGAATACCTCAAGCAGTCACTGCGAATTGTCATTTGGCTCGATTAAATTTGGCCAACAACATGCTACATAAAAGCTCTTCAATGCCTCCAGAAGTAATGGCGATGTTAAGTGGATTGTCCCAACTGAAAATCGACGGAAATCCCTTGATGGTATTTTGGTCTTTTAAAAATCAAAAAATCAGTTCAGAAATTCAGGAATTTCCCGCTTCGTTCCTCTTGATTTCTCGGGAGAACTTCCGCTTACTCCGACATCTTCTTCACTCAACAATGACTCTTCCTGTCTGGCTTCGTGAGCCATGTGCGCCGTATTATTGGTCTATGCACTTGGCTAACAGGTAAAGAATAAACTCTAAAAAAAAGAAAATTAATTTAATTTTTCAGAACTTCAAATTTGAAGTCTTTCGTAAACCAATATGATGAGGAACGAATGCTGAAAAGCGGTTTGGGTTACTGTAGAGAACAATATGATTGGATGTTGGAACAGATGGAAGTTTATAGAGAATTAGAAAAAAATTC</canonical>
            <polymorphic>AAGGGCCGACCCTTCTATTGTTCCAAGGTATCTCCAGAGGGCCCGTTCTATTTTTCCGGTCATTTCTCTACGAATGTTTTCATCTAAAAATTCGGTGAATTCTCGTTCGCAATTCATGAAAATATATCAATTTCACCAAAATTGAGCAAATTTTCGAGTTAATAAAAGTTTCAACAAATTTCTGCAAAATTGTGGACTTTCCGGAATATTTTCATTGAAAACATACGGAAATGTTCATTTTCAAACAACACATTTTGAAAAAAGCCCTTCTATTACTGAGTCCTTCTCAGTGGGCCCTTCTATTAAACGGCCCCTATGTTTCACGATAGCTCAATTCCAGACCTTATCTCCTGATCATTTCTATGGATTGGCTTCTTTGAAAACGTTATCCCTATCTCGAATGCCAATCCAAACGATTTCTCCTTATTCCTTCGTTCCTCTAAAATCGCTTCGATATCTTGATATGGACTCTTGCAATTTGACAAGAATACCTCAAGCARTCACTGCGAATTGTCATTTGGCTCGATTAAATTTGGCCAACAACATGCTACATAAAAGCTCTTCAATGCCTCCAGAAGTAATGGCGATGTTAAGTGGATTGTCCCAACTGAAAATCGACGGAAATCCCTTGATGGTATTTTGGTCTTTTAAAAATCAAAAAATCAGTTCAGAAATTCAGGAATTTCCCGCTTCGTTCCTCTTGATTTCTCGGGAGAACTTCCGCTTACTCCGACATCTTCTTCACTCAACAATGACTCTTCCTGTCTGGCTTCGTGAGCCATGTGCGCCGTATTATTGGTCTATGCACTTGGCTAACAGGTAAAGAATAAACTCTAAAAAAAAGAAAATTAATTTAATTTTTCAGAACTTCAAATTTGAAGTCTTTCGTAAACCAATATGATGAGGAACGAATGCTGAAAAGCGGTTTGGGTTACTGTAGAGAACAATATGATTGGATGTTGGAACAGATGGAAGTTTATAGAGAATTAGAAAAAAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAGNNNCTG</site>
                <isoschizomers>
                    <enzyme>AlwNI</enzyme>
                    <enzyme>CaiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>499 431 70</canonical_bands>
                <polymorphic_bands>930 70</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGTTTCACGATAGCTCAATTC</pcr_primer_p1>
		<pcr_primer_p2>AAGAGCTTTTATGTAGCATGTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATGTTTCACGATAGCTCAATTCCAGACCTTATCTCCTGATCATTTCTATGGATTGGCTTCTTTGAAAACGTTATCCCTATCTCGAATGCCAATCCAAACGATTTCTCCTTATTCCTTCGTTCCTCTAAAATCGCTTCGATATCTTGATATGGACTCTTGCAATTTGACAAGAATACCTCAAGCAGTCACTGCGAATTGTCATTTGGCTCGATTAAATTTGGCCAACAACATGCTACATAAAAGCTCTT</canonical_amplicon>
		<polymorphic_amplicon>TATGTTTCACGATAGCTCAATTCCAGACCTTATCTCCTGATCATTTCTATGGATTGGCTTCTTTGAAAACGTTATCCCTATCTCGAATGCCAATCCAAACGATTTCTCCTTATTCCTTCGTTCCTCTAAAATCGCTTCGATATCTTGATATGGACTCTTGCAATTTGACAAGAATACCTCAAGCARTCACTGCGAATTGTCATTTGGCTCGATTAAATTTGGCCAACAACATGCTACATAAAAGCTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24094</snp_id>
        <super_contig>c000201245.Contig1</super_contig>
        <contig_pos>932396</contig_pos>
        <strand></strand>
        <context>ACCAACCGAC[A/T]ACAGATGAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATTGTCGGTTGTGTTCTTGCCACATCTTTTCATCAAACAACCAACCGAC</left_flank>
        <right_flank>ACAGATGAGCAATCGATAATCTGCATTTTCAGAAGCTTATCAGTGAGGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGAAATGGACATACCGCTAGCAACACGTGGCAGAATCTTCCACGGAGCCATAGAAACTTTGACGATTCACTTCCCCCGACATCGCCTGATCCATCCATCTCGGAAGTGTTGGTAGCAGCACTTTTGATTTCTTCAACGAATGCCTGAAATCTTTTCCAGTAAATTCCCGCAGGACTCAAGTGTTCTAAACGTACGATAAGGAAATCGTTGAAAAGATTTCTTTGGAAAGAAACCATCCTGTCCAATTTTTCTTTGTGATTTTCTAATTCCTCCATTTCTCCTTTTAGTTTTTCATCCACCACGGTTTCCTCTTCCATTTTGACATCTCCTGCTTCAGTAACTTTCTCTTTGCTCTCAACTTTTTCTGTCAAATCTTTGATATCCTTCTCAACCACATTAATCTGTCTGGTAAGCTTCTCAAGAGCTTGATTGAGCACTTCGAACAGCCATTGTCGGTTGTGTTCTTGCCACATCTTTTCATCAAACAACCAACCGACAACAGATGAGCAATCGATAATCTGCATTTTCAGAAGCTTATCAGTGAGGATCATCAACATTTGTTGGTTAGACTTCCAGCAAGAATAAAGTGTTTCAAGGAGCTTCTCTTGATATTGCTCAGCTGCATCACATACTGTTTTCAGAGTGTCTTTGTATCTGAAATGTTAAACGTAGGAAGAATAATTTTAAAAAACACAAACTACCTAAAAAGTGCCGAAAAGTTATGAGAATAAGTTTTTGATGCCATCTTCAGCATGACAGTGACGAAAACCCCGAATTCGTTAATATTATATGGAAGCTCATCATTCTCATCGGTTGACTTCAGCTCTTTGAGGAATGCGTCCGCTGGCTGTCGCTCTTGAAACATCTGTGTGAATGTTTCAGCACGTTGACTCATGGCGTCTTCTGAAAAATTGATAACGTTCGGAAACTTTTTCTATTGATAAGTAGTTGATACCTTCGTCGAGTAGATATCTGATTTCTGGAGACGCTGGGTGAAT</canonical>
            <polymorphic>GATGAAATGGACATACCGCTAGCAACACGTGGCAGAATCTTCCACGGAGCCATAGAAACTTTGACGATTCACTTCCCCCGACATCGCCTGATCCATCCATCTCGGAAGTGTTGGTAGCAGCACTTTTGATTTCTTCAACGAATGCCTGAAATCTTTTCCAGTAAATTCCCGCAGGACTCAAGTGTTCTAAACGTACGATAAGGAAATCGTTGAAAAGATTTCTTTGGAAAGAAACCATCCTGTCCAATTTTTCTTTGTGATTTTCTAATTCCTCCATTTCTCCTTTTAGTTTTTCATCCACCACGGTTTCCTCTTCCATTTTGACATCTCCTGCTTCAGTAACTTTCTCTTTGCTCTCAACTTTTTCTGTCAAATCTTTGATATCCTTCTCAACCACATTAATCTGTCTGGTAAGCTTCTCAAGAGCTTGATTGAGCACTTCGAACAGCCATTGTCGGTTGTGTTCTTGCCACATCTTTTCATCAAACAACCAACCGACWACAGATGAGCAATCGATAATCTGCATTTTCAGAAGCTTATCAGTGAGGATCATCAACATTTGTTGGTTAGACTTCCAGCAAGAATAAAGTGTTTCAAGGAGCTTCTCTTGATATTGCTCAGCTGCATCACATACTGTTTTCAGAGTGTCTTTGTATCTGAAATGTTAAACGTAGGAAGAATAATTTTAAAAAACACAAACTACCTAAAAAGTGCCGAAAAGTTATGAGAATAAGTTTTTGATGCCATCTTCAGCATGACAGTGACGAAAACCCCGAATTCGTTAATATTATATGGAAGCTCATCATTCTCATCGGTTGACTTCAGCTCTTTGAGGAATGCGTCCGCTGGCTGTCGCTCTTGAAACATCTGTGTGAATGTTTCAGCACGTTGACTCATGGCGTCTTCTGAAAAATTGATAACGTTCGGAAACTTTTTCTATTGATAAGTAGTTGATACCTTCGTCGAGTAGATATCTGATTTCTGGAGACGCTGGGTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTCAACTTTTTCTGTCAAATC</pcr_primer_p1>
		<pcr_primer_p2>AGCTCCTTGAAACACTTTATTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTCAACTTTTTCTGTCAAATCTTTGATATCCTTCTCAACCACATTAATCTGTCTGGTAAGCTTCTCAAGAGCTTGATTGAGCACTTCGAACAGCCATTGTCGGTTGTGTTCTTGCCACATCTTTTCATCAAACAACCAACCGACAACAGATGAGCAATCGATAATCTGCATTTTCAGAAGCTTATCAGTGAGGATCATCAACATTTGTTGGTTAGACTTCCAGCAAGAATAAAGTGTTTCAAGGAGCT</canonical_amplicon>
		<polymorphic_amplicon>CTCTCAACTTTTTCTGTCAAATCTTTGATATCCTTCTCAACCACATTAATCTGTCTGGTAAGCTTCTCAAGAGCTTGATTGAGCACTTCGAACAGCCATTGTCGGTTGTGTTCTTGCCACATCTTTTCATCAAACAACCAACCGACWACAGATGAGCAATCGATAATCTGCATTTTCAGAAGCTTATCAGTGAGGATCATCAACATTTGTTGGTTAGACTTCCAGCAAGAATAAAGTGTTTCAAGGAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24095</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>35613</contig_pos>
        <strand>+</strand>
        <context>ATTTCTCTGG[G/T]GTTGCCAGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAGAAGACCCAACGGAGAGCGTCGATGATGTTTCGGAAATATTTCTCTGG</left_flank>
        <right_flank>GTTGCCAGTAGAGGAATCGGGATGTTGTTGTCTGGAGTGTCGCAGAGGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCTCCGAGCTTTCAGCCATAAATTCCAGGCTGGAATTTCCAGCTATATCTGCCAACCTCCCAGCCAAAAAGACATTAAAACTCACATTATGCCTCCACCTCTTGGCCAACGTTGAAAGTGAGCTCCAATAGGTCAACGATGGAATATGCTCATTGAGCACTGCATTTAACCACATATCAAACAACGTATCAGTCACTCGAACACAAGTTCTCGTTCCCATTTCCTCAGTCGCATTCGGTTCCGATAGTAGAATATCAGAACTATTCAACAAGAAGCTTATCGTTCTCGCCCATACTTCATCTTGATACTTTCTACTTGAATTCCTTGTCAGATACTTCAATGAATCCAGAACCATATCAATCTCAATCGACTGTCTTTCTATTGCCAATCCACGTGGTACTTGAGAAGAACCGCCGAGTGTGGATTCAAGATCATCGTCACGTCTACAGAAGACCCAACGGAGAGCGTCGATGATGTTTCGGAAATATTTCTCTGGGGTTGCCAGTAGAGGAATCGGGATGTTGTTGTCTGGAGTGTCGCAGAGGGCACGAAGCCAGTGGAGATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCATTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTT</canonical>
            <polymorphic>TTTCCTCCGAGCTTTCAGCCATAAATTCCAGGCTGGAATTTCCAGCTATATCTGCCAACCTCCCAGCCAAAAAGACATTAAAACTCACATTATGCCTCCACCTCTTGGCCAACGTTGAAAGTGAGCTCCAATAGGTCAACGATGGAATATGCTCATTGAGCACTGCATTTAACCACATATCAAACAACGTATCAGTCACTCGAACACAAGTTCTCGTTCCCATTTCCTCAGTCGCATTCGGTTCCGATAGTAGAATATCAGAACTATTCAACAAGAAGCTTATCGTTCTCGCCCATACTTCATCTTGATACTTTCTACTTGAATTCCTTGTCAGATACTTCAATGAATCCAGAACCATATCAATCTCAATCGACTGTCTTTCTATTGCCAATCCACGTGGTACTTGAGAAGAACCGCCGAGTGTGGATTCAAGATCATCGTCACGTCTACAGAAGACCCAACGGAGAGCGTCGATGATGTTTCGGAAATATTTCTCTGGKGTTGCCAGTAGAGGAATCGGGATGTTGTTGTCTGGAGTGTCGCAGAGGGCACGAAGCCAGTGGAGATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCATTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGATACTTCAATGAATCCAGAA</pcr_primer_p1>
		<pcr_primer_p2>GTGCGAATCTATCTCCACTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAGATACTTCAATGAATCCAGAACCATATCAATCTCAATCGACTGTCTTTCTATTGCCAATCCACGTGGTACTTGAGAAGAACCGCCGAGTGTGGATTCAAGATCATCGTCACGTCTACAGAAGACCCAACGGAGAGCGTCGATGATGTTTCGGAAATATTTCTCTGGGGTTGCCAGTAGAGGAATCGGGATGTTGTTGTCTGGAGTGTCGCAGAGGGCACGAAGCCAGTGGAGATAGATTCGCAC</canonical_amplicon>
		<polymorphic_amplicon>CAGATACTTCAATGAATCCAGAACCATATCAATCTCAATCGACTGTCTTTCTATTGCCAATCCACGTGGTACTTGAGAAGAACCGCCGAGTGTGGATTCAAGATCATCGTCACGTCTACAGAAGACCCAACGGAGAGCGTCGATGATGTTTCGGAAATATTTCTCTGGKGTTGCCAGTAGAGGAATCGGGATGTTGTTGTCTGGAGTGTCGCAGAGGGCACGAAGCCAGTGGAGATAGATTCGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24096</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>35902</contig_pos>
        <strand></strand>
        <context>atcagttgac[C/A]mrtttttgat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGAC</left_flank>
        <right_flank>AGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCCCATACTTCATCTTGATACTTTCTACTTGAATTCCTTGTCAGATACTTCAATGAATCCAGAACCATATCAATCTCAATCGACTGTCTTTCTATTGCCAATCCACGTGGTACTTGAGAAGAACCGCCGAGTGTGGATTCAAGATCATCGTCACGTCTACAGAAGACCCAACGGAGAGCGTCGATGATGTTTCGGAAATATTTCTCTGGGGTTGCCAGTAGAGGAATCGGGATGTTGTTGTCTGGAGTGTCGCAGAGGGCACGAAGCCAGTGGAGATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCATTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAAT</canonical>
            <polymorphic>CGCCCATACTTCATCTTGATACTTTCTACTTGAATTCCTTGTCAGATACTTCAATGAATCCAGAACCATATCAATCTCAATCGACTGTCTTTCTATTGCCAATCCACGTGGTACTTGAGAAGAACCGCCGAGTGTGGATTCAAGATCATCGTCACGTCTACAGAAGACCCAACGGAGAGCGTCGATGATGTTTCGGAAATATTTCTCTGGGGTTGCCAGTAGAGGAATCGGGATGTTGTTGTCTGGAGTGTCGCAGAGGGCACGAAGCCAGTGGAGATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCATTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACMAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGCCAGTGGAGATAGATTC</pcr_primer_p1>
		<pcr_primer_p2>GAAAAATCATCCAGATTTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>GAAGCCAGTGGAGATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCATTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTC</canonical_amplicon>
		<polymorphic_amplicon>GAAGCCAGTGGAGATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCATTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACMAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24097</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>35903</contig_pos>
        <strand></strand>
        <context>tcagttgacm[A/C]rtttttgata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACC</left_flank>
        <right_flank>GTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCCATACTTCATCTTGATACTTTCTACTTGAATTCCTTGTCAGATACTTCAATGAATCCAGAACCATATCAATCTCAATCGACTGTCTTTCTATTGCCAATCCACGTGGTACTTGAGAAGAACCGCCGAGTGTGGATTCAAGATCATCGTCACGTCTACAGAAGACCCAACGGAGAGCGTCGATGATGTTTCGGAAATATTTCTCTGGGGTTGCCAGTAGAGGAATCGGGATGTTGTTGTCTGGAGTGTCGCAGAGGGCACGAAGCCAGTGGAGATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCATTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATA</canonical>
            <polymorphic>GCCCATACTTCATCTTGATACTTTCTACTTGAATTCCTTGTCAGATACTTCAATGAATCCAGAACCATATCAATCTCAATCGACTGTCTTTCTATTGCCAATCCACGTGGTACTTGAGAAGAACCGCCGAGTGTGGATTCAAGATCATCGTCACGTCTACAGAAGACCCAACGGAGAGCGTCGATGATGTTTCGGAAATATTTCTCTGGGGTTGCCAGTAGAGGAATCGGGATGTTGTTGTCTGGAGTGTCGCAGAGGGCACGAAGCCAGTGGAGATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCATTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCMGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGCCAGTGGAGATAGATTC</pcr_primer_p1>
		<pcr_primer_p2>GAAAAATCATCCAGATTTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>GAAGCCAGTGGAGATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCATTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTC</canonical_amplicon>
		<polymorphic_amplicon>GAAGCCAGTGGAGATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCATTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCMGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24098</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>35904</contig_pos>
        <strand></strand>
        <context>cagttgacmm[G/A]tttttgatat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCA</left_flank>
        <right_flank>TTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCATACTTCATCTTGATACTTTCTACTTGAATTCCTTGTCAGATACTTCAATGAATCCAGAACCATATCAATCTCAATCGACTGTCTTTCTATTGCCAATCCACGTGGTACTTGAGAAGAACCGCCGAGTGTGGATTCAAGATCATCGTCACGTCTACAGAAGACCCAACGGAGAGCGTCGATGATGTTTCGGAAATATTTCTCTGGGGTTGCCAGTAGAGGAATCGGGATGTTGTTGTCTGGAGTGTCGCAGAGGGCACGAAGCCAGTGGAGATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCATTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAA</canonical>
            <polymorphic>CCCATACTTCATCTTGATACTTTCTACTTGAATTCCTTGTCAGATACTTCAATGAATCCAGAACCATATCAATCTCAATCGACTGTCTTTCTATTGCCAATCCACGTGGTACTTGAGAAGAACCGCCGAGTGTGGATTCAAGATCATCGTCACGTCTACAGAAGACCCAACGGAGAGCGTCGATGATGTTTCGGAAATATTTCTCTGGGGTTGCCAGTAGAGGAATCGGGATGTTGTTGTCTGGAGTGTCGCAGAGGGCACGAAGCCAGTGGAGATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCATTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCARTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGCCAGTGGAGATAGATTC</pcr_primer_p1>
		<pcr_primer_p2>GAAAAATCATCCAGATTTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>GAAGCCAGTGGAGATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCATTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTC</canonical_amplicon>
		<polymorphic_amplicon>GAAGCCAGTGGAGATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCATTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCARTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24099</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>35923</contig_pos>
        <strand></strand>
        <context>atctcttata[G/A]aagccgagat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATA</left_flank>
        <right_flank>AAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTCTACTTGAATTCCTTGTCAGATACTTCAATGAATCCAGAACCATATCAATCTCAATCGACTGTCTTTCTATTGCCAATCCACGTGGTACTTGAGAAGAACCGCCGAGTGTGGATTCAAGATCATCGTCACGTCTACAGAAGACCCAACGGAGAGCGTCGATGATGTTTCGGAAATATTTCTCTGGGGTTGCCAGTAGAGGAATCGGGATGTTGTTGTCTGGAGTGTCGCAGAGGGCACGAAGCCAGTGGAGATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCATTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGT</canonical>
            <polymorphic>CTTTCTACTTGAATTCCTTGTCAGATACTTCAATGAATCCAGAACCATATCAATCTCAATCGACTGTCTTTCTATTGCCAATCCACGTGGTACTTGAGAAGAACCGCCGAGTGTGGATTCAAGATCATCGTCACGTCTACAGAAGACCCAACGGAGAGCGTCGATGATGTTTCGGAAATATTTCTCTGGGGTTGCCAGTAGAGGAATCGGGATGTTGTTGTCTGGAGTGTCGCAGAGGGCACGAAGCCAGTGGAGATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCATTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATARAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGCCAGTGGAGATAGATTC</pcr_primer_p1>
		<pcr_primer_p2>GAAAAATCATCCAGATTTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>GAAGCCAGTGGAGATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCATTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTC</canonical_amplicon>
		<polymorphic_amplicon>GAAGCCAGTGGAGATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCATTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATARAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24100</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>36063</contig_pos>
        <strand></strand>
        <context>tggtcaaagg[T/C]ctcacaacga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGG</left_flank>
        <right_flank>CTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAGACCCAACGGAGAGCGTCGATGATGTTTCGGAAATATTTCTCTGGGGTTGCCAGTAGAGGAATCGGGATGTTGTTGTCTGGAGTGTCGCAGAGGGCACGAAGCCAGTGGAGATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCATTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTAACTTTTTTAGTTCCTTTTTTAGTGAAATTTTCGAATTTTCGGGAAAAAAATTTCCAATTTCAGTGATTTTTTGAAATTTTAAAAACGATTTTTCGACTTAAAAGTGACTGA</canonical>
            <polymorphic>AGAAGACCCAACGGAGAGCGTCGATGATGTTTCGGAAATATTTCTCTGGGGTTGCCAGTAGAGGAATCGGGATGTTGTTGTCTGGAGTGTCGCAGAGGGCACGAAGCCAGTGGAGATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCATTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGYCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTAACTTTTTTAGTTCCTTTTTTAGTGAAATTTTCGAATTTTCGGGAAAAAAATTTCCAATTTCAGTGATTTTTTGAAATTTTAAAAACGATTTTTCGACTTAAAAGTGACTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTTCAGAATTTTAAGCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TACAAATTTTCTGAAGCTCAACT</pcr_primer_p2>
		<pcr_amplicon_size>453</pcr_amplicon_size>
		<canonical_amplicon>GATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGYCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24101</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>36153</contig_pos>
        <strand></strand>
        <context>ggaaattcgg[G/A]aattcagaag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGG</left_flank>
        <right_flank>AATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCAGAGGGCACGAAGCCAGTGGAGATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCATTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTAACTTTTTTAGTTCCTTTTTTAGTGAAATTTTCGAATTTTCGGGAAAAAAATTTCCAATTTCAGTGATTTTTTGAAATTTTAAAAACGATTTTTCGACTTAAAAGTGACTGAAAATCTCAGATTTTTTCCAAAAATTCAGATTTTCTGTTTGTCTGTTTGTCCGGATGTCCTTATTAATACCAAAAATATGAAAATCACATT</canonical>
            <polymorphic>CGCAGAGGGCACGAAGCCAGTGGAGATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCATTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGRAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTAACTTTTTTAGTTCCTTTTTTAGTGAAATTTTCGAATTTTCGGGAAAAAAATTTCCAATTTCAGTGATTTTTTGAAATTTTAAAAACGATTTTTCGACTTAAAAGTGACTGAAAATCTCAGATTTTTTCCAAAAATTCAGATTTTCTGTTTGTCTGTTTGTCCGGATGTCCTTATTAATACCAAAAATATGAAAATCACATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>237 196 112 69 58 47 39 33 33 31 26 16 16 15 9 8 8 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>237 196 112 69 58 47 39 33 33 31 26 24 16 15 9 8 8 8 8 8 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>500 323 177</canonical_bands>
                <polymorphic_bands>677 323</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>328 226 121 95 67 45 44 40 21 13</canonical_bands>
                <polymorphic_bands>328 226 139 121 67 45 40 21 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTTTCAGAATTTTAAGCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TACAAATTTTCTGAAGCTCAACT</pcr_primer_p2>
		<pcr_amplicon_size>453</pcr_amplicon_size>
		<canonical_amplicon>GATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGRAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24102</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>36164</contig_pos>
        <strand></strand>
        <context>aattcagaag[A/T]tcagaaattc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAG</left_flank>
        <right_flank>TCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTC</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAAGCCAGTGGAGATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCATTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTAACTTTTTTAGTTCCTTTTTTAGTGAAATTTTCGAATTTTCGGGAAAAAAATTTCCAATTTCAGTGATTTTTTGAAATTTTAAAAACGATTTTTCGACTTAAAAGTGACTGAAAATCTCAGATTTTTTCCAAAAATTCAGATTTTCTGTTTGTCTGTTTGTCCGGATGTCCTTATTAATACCAAAAATATGAAAATCACATTTTACAATTCAC</canonical>
            <polymorphic>CGAAGCCAGTGGAGATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCATTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGWTCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTAACTTTTTTAGTTCCTTTTTTAGTGAAATTTTCGAATTTTCGGGAAAAAAATTTCCAATTTCAGTGATTTTTTGAAATTTTAAAAACGATTTTTCGACTTAAAAGTGACTGAAAATCTCAGATTTTTTCCAAAAATTCAGATTTTCTGTTTGTCTGTTTGTCCGGATGTCCTTATTAATACCAAAAATATGAAAATCACATTTTACAATTCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTTTCAGAATTTTAAGCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TACAAATTTTCTGAAGCTCAACT</pcr_primer_p2>
		<pcr_amplicon_size>453</pcr_amplicon_size>
		<canonical_amplicon>GATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGWTCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24103</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>36176</contig_pos>
        <strand></strand>
        <context>cagaaattca[A/G]awattsagaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCA</left_flank>
        <right_flank>ATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCATTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTAACTTTTTTAGTTCCTTTTTTAGTGAAATTTTCGAATTTTCGGGAAAAAAATTTCCAATTTCAGTGATTTTTTGAAATTTTAAAAACGATTTTTCGACTTAAAAGTGACTGAAAATCTCAGATTTTTTCCAAAAATTCAGATTTTCTGTTTGTCTGTTTGTCCGGATGTCCTTATTAATACCAAAAATATGAAAATCACATTTTACAATTCACAACACAAAGAAG</canonical>
            <polymorphic>AGATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCATTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCARATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTAACTTTTTTAGTTCCTTTTTTAGTGAAATTTTCGAATTTTCGGGAAAAAAATTTCCAATTTCAGTGATTTTTTGAAATTTTAAAAACGATTTTTCGACTTAAAAGTGACTGAAAATCTCAGATTTTTTCCAAAAATTCAGATTTTCTGTTTGTCTGTTTGTCCGGATGTCCTTATTAATACCAAAAATATGAAAATCACATTTTACAATTCACAACACAAAGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>498 418 84</canonical_bands>
                <polymorphic_bands>582 418</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTTTCAGAATTTTAAGCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TACAAATTTTCTGAAGCTCAACT</pcr_primer_p2>
		<pcr_amplicon_size>453</pcr_amplicon_size>
		<canonical_amplicon>GATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCARATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24104</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>36178</contig_pos>
        <strand></strand>
        <context>gaaattcara[T/A]attsagaaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAA</left_flank>
        <right_flank>ATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCATTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTAACTTTTTTAGTTCCTTTTTTAGTGAAATTTTCGAATTTTCGGGAAAAAAATTTCCAATTTCAGTGATTTTTTGAAATTTTAAAAACGATTTTTCGACTTAAAAGTGACTGAAAATCTCAGATTTTTTCCAAAAATTCAGATTTTCTGTTTGTCTGTTTGTCCGGATGTCCTTATTAATACCAAAAATATGAAAATCACATTTTACAATTCACAACACAAAGAAGAT</canonical>
            <polymorphic>ATAGATTCGCACGGCGCCTGGGAATTTTCAGAATCTCATTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAAWATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTAACTTTTTTAGTTCCTTTTTTAGTGAAATTTTCGAATTTTCGGGAAAAAAATTTCCAATTTCAGTGATTTTTTGAAATTTTAAAAACGATTTTTCGACTTAAAAGTGACTGAAAATCTCAGATTTTTTCCAAAAATTCAGATTTTCTGTTTGTCTGTTTGTCCGGATGTCCTTATTAATACCAAAAATATGAAAATCACATTTTACAATTCACAACACAAAGAAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 416 84</canonical_bands>
                <polymorphic_bands>584 416</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTTTCAGAATTTTAAGCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TACAAATTTTCTGAAGCTCAACT</pcr_primer_p2>
		<pcr_amplicon_size>453</pcr_amplicon_size>
		<canonical_amplicon>GATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAAWATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24105</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>36182</contig_pos>
        <strand></strand>
        <context>ttcarawatt[G/C]agaaattcag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATT</left_flank>
        <right_flank>AGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCGCACGGCGCCTGGGAATTTTCAGAATCTCATTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTAACTTTTTTAGTTCCTTTTTTAGTGAAATTTTCGAATTTTCGGGAAAAAAATTTCCAATTTCAGTGATTTTTTGAAATTTTAAAAACGATTTTTCGACTTAAAAGTGACTGAAAATCTCAGATTTTTTCCAAAAATTCAGATTTTCTGTTTGTCTGTTTGTCCGGATGTCCTTATTAATACCAAAAATATGAAAATCACATTTTACAATTCACAACACAAAGAAGATAGTT</canonical>
            <polymorphic>ATTCGCACGGCGCCTGGGAATTTTCAGAATCTCATTTTAAGAATCGATTTTTCTAAAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTSAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTAACTTTTTTAGTTCCTTTTTTAGTGAAATTTTCGAATTTTCGGGAAAAAAATTTCCAATTTCAGTGATTTTTTGAAATTTTAAAAACGATTTTTCGACTTAAAAGTGACTGAAAATCTCAGATTTTTTCCAAAAATTCAGATTTTCTGTTTGTCTGTTTGTCCGGATGTCCTTATTAATACCAAAAATATGAAAATCACATTTTACAATTCACAACACAAAGAAGATAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTTCAGAATTTTAAGCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TACAAATTTTCTGAAGCTCAACT</pcr_primer_p2>
		<pcr_amplicon_size>453</pcr_amplicon_size>
		<canonical_amplicon>GATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTSAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24106</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>36237</contig_pos>
        <strand></strand>
        <context>actcgaaaat[C/T]caattttcga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAAT</left_flank>
        <right_flank>CAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTAACTTTTTTAGTTCCTTTTTTAGTGAAATTTTCGAATTTTCGGGAAAAAAATTTCCAATTTCAGTGATTTTTTGAAATTTTAAAAACGATTTTTCGACTTAAAAGTGACTGAAAATCTCAGATTTTTTCCAAAAATTCAGATTTTCTGTTTGTCTGTTTGTCCGGATGTCCTTATTAATACCAAAAATATGAAAATCACATTTTACAATTCACAACACAAAGAAGATAGTTCACTAAACAGAAGCATCTTAGAGAGGAGCATACCATTGTTTCGAAGGTTACTGTA</canonical>
            <polymorphic>AAAATTTCGGATTTATAGCTTTAAAACATTGATTATTTATTGAAAAAAATCACCGTAGAACCTGTAACTATGAGCCAATTTATCTCAATTCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATYCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTAACTTTTTTAGTTCCTTTTTTAGTGAAATTTTCGAATTTTCGGGAAAAAAATTTCCAATTTCAGTGATTTTTTGAAATTTTAAAAACGATTTTTCGACTTAAAAGTGACTGAAAATCTCAGATTTTTTCCAAAAATTCAGATTTTCTGTTTGTCTGTTTGTCCGGATGTCCTTATTAATACCAAAAATATGAAAATCACATTTTACAATTCACAACACAAAGAAGATAGTTCACTAAACAGAAGCATCTTAGAGAGGAGCATACCATTGTTTCGAAGGTTACTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTTCAGAATTTTAAGCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TACAAATTTTCTGAAGCTCAACT</pcr_primer_p2>
		<pcr_amplicon_size>453</pcr_amplicon_size>
		<canonical_amplicon>GATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATYCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24107</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>36331</contig_pos>
        <strand></strand>
        <context>tgtttcaaaa[T/A]atccgaaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAA</left_flank>
        <right_flank>ATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGAC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTAACTTTTTTAGTTCCTTTTTTAGTGAAATTTTCGAATTTTCGGGAAAAAAATTTCCAATTTCAGTGATTTTTTGAAATTTTAAAAACGATTTTTCGACTTAAAAGTGACTGAAAATCTCAGATTTTTTCCAAAAATTCAGATTTTCTGTTTGTCTGTTTGTCCGGATGTCCTTATTAATACCAAAAATATGAAAATCACATTTTACAATTCACAACACAAAGAAGATAGTTCACTAAACAGAAGCATCTTAGAGAGGAGCATACCATTGTTTCGAAGGTTACTGTAGCTTTTTTACCGTACTTTTCCATTTAAATAAATATCGAAAACTATAGGAATAATAAACGAGAATTGTCTGAAATTTTTTGATTAAAGGAATTTC</canonical>
            <polymorphic>TCAAAGATATAAACAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAAWATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTAACTTTTTTAGTTCCTTTTTTAGTGAAATTTTCGAATTTTCGGGAAAAAAATTTCCAATTTCAGTGATTTTTTGAAATTTTAAAAACGATTTTTCGACTTAAAAGTGACTGAAAATCTCAGATTTTTTCCAAAAATTCAGATTTTCTGTTTGTCTGTTTGTCCGGATGTCCTTATTAATACCAAAAATATGAAAATCACATTTTACAATTCACAACACAAAGAAGATAGTTCACTAAACAGAAGCATCTTAGAGAGGAGCATACCATTGTTTCGAAGGTTACTGTAGCTTTTTTACCGTACTTTTCCATTTAAATAAATATCGAAAACTATAGGAATAATAAACGAGAATTGTCTGAAATTTTTTGATTAAAGGAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTTCAGAATTTTAAGCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TACAAATTTTCTGAAGCTCAACT</pcr_primer_p2>
		<pcr_amplicon_size>453</pcr_amplicon_size>
		<canonical_amplicon>GATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAAWATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24108</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>36344</contig_pos>
        <strand></strand>
        <context>ccgaaaaata[A/T]aaatatcttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATA</left_flank>
        <right_flank>AAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTAACTTTTTTAGTTCCTTTTTTAGTGAAATTTTCGAATTTTCGGGAAAAAAATTTCCAATTTCAGTGATTTTTTGAAATTTTAAAAACGATTTTTCGACTTAAAAGTGACTGAAAATCTCAGATTTTTTCCAAAAATTCAGATTTTCTGTTTGTCTGTTTGTCCGGATGTCCTTATTAATACCAAAAATATGAAAATCACATTTTACAATTCACAACACAAAGAAGATAGTTCACTAAACAGAAGCATCTTAGAGAGGAGCATACCATTGTTTCGAAGGTTACTGTAGCTTTTTTACCGTACTTTTCCATTTAAATAAATATCGAAAACTATAGGAATAATAAACGAGAATTGTCTGAAATTTTTTGATTAAAGGAATTTCGGCTTTTTAGGTC</canonical>
            <polymorphic>CAAGTTGTCAACTGATAAATTGTTCATCATAATATCACAAACCTTTTATCAGTTGACCAGTTTTTGATATCTCTTATAGAAGCCGAGATAAAAGAGTCCAAACTTGACAGTATGGAGACACTTCTATTACAGAATTCTAGAGTTGAAATCTGGATGATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAWAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTAACTTTTTTAGTTCCTTTTTTAGTGAAATTTTCGAATTTTCGGGAAAAAAATTTCCAATTTCAGTGATTTTTTGAAATTTTAAAAACGATTTTTCGACTTAAAAGTGACTGAAAATCTCAGATTTTTTCCAAAAATTCAGATTTTCTGTTTGTCTGTTTGTCCGGATGTCCTTATTAATACCAAAAATATGAAAATCACATTTTACAATTCACAACACAAAGAAGATAGTTCACTAAACAGAAGCATCTTAGAGAGGAGCATACCATTGTTTCGAAGGTTACTGTAGCTTTTTTACCGTACTTTTCCATTTAAATAAATATCGAAAACTATAGGAATAATAAACGAGAATTGTCTGAAATTTTTTGATTAAAGGAATTTCGGCTTTTTAGGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTTCAGAATTTTAAGCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TACAAATTTTCTGAAGCTCAACT</pcr_primer_p2>
		<pcr_amplicon_size>453</pcr_amplicon_size>
		<canonical_amplicon>GATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAAAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTTCAGAATTTTAAGCTTTTTTTTTAGTTGTTATTCTGGAAGCGCACGGTGGTCAAAGGTCTCACAACGACAACTACAGTAACCTAAAAATATTTGTATTTTCAGGATTTAATACAGAAATTTAGAAATTCAAAAATTCGGAAATTCGGGAATTCAGAAGATCAGAAATTCAAATATTGAGAAATTCAGAATTTCAAAAATTCGGAAATTCAAAAATTCAAAAACTCGAAAATCCAATTTTCGAGAATTTCGGCCTGTTTTTCACGACTTTTTTGAGGAAAAATAACTGAAAAATTGACTGAAAACGCACAAAAATCTGTTTCAAAATATCCGAAAAATAWAAATATCTTTAGGTTACTGTAGCTATCGTTGGGGGACCTTTCTTGGAACCAAAATAATAAAAATAGATATTTTTTGAGTTTTCGAAGTTGAGCTTCAGAAAATTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24109</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>50085</contig_pos>
        <strand>+</strand>
        <context>TTTCTAGATC[C/T]AAATTTTCGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCAGGAATTCCGATATGGCGATGGATCTTCGGAAATGATTTCTAGATC</left_flank>
        <right_flank>AAATTTTCGGATATTGTCTAGATTTGAACTTTTAAAGTTCCATCTGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGAAATCTCTTCTTATCAGTTATCTCTTTTTCTCTGTATATTTCTCCATTCATTAAAAATGAATCATCGAAAACCGGATTGGTTCACAGCTTATCGTCATTTGGAAATTTCATTTTAAACTAGTCAAATTCGAAGTCTAGAAGAAACATTCTAACATTTTTCCGATTTGCTTGAAATTTTCAGAGTGTACTAAACAAAGAATGCGCTTCATTTTTGTAATTGATAATTTTTCTGTACAAATCCAACCAAGTGAAATAAGTGGCTACAAAATGGCCCAATTCTGATTTTAATGATGATTTCGGCAATTTCGGTCCTTTTTTGGTTACGAACTGCATAGTTCATTAGAATGAATCTTGGCCAGAAAGTTGCCAACTACAAAAATAAAGCTCTAATTCTGTTCATTTTACTCGGAAATTTTCAGAAAAATAGACAAATCCTGGGATACTTTTTCAGGAATTCCGATATGGCGATGGATCTTCGGAAATGATTTCTAGATCCAAATTTTCGGATATTGTCTAGATTTGAACTTTTAAAGTTCCATCTGAAAATCACAGAAAGAAAACAAACAAGGGTAATTATTGATTAGAATCCAAAAAACATAAAAATAAAAATTATTCAACCCATCGACGCTTTTACTGCACCCAAATCTCTGGTTTCCACGGCACGAAGTAGGGTTTCAGGGATGTTTGATGTTCGAATGGCTGCGGATCTGAAATGTTAACTTTAAGCCAATTTATCTCGGTTCCTGAAAAAGATACAAAACATTTGTCAACCAGAAAAATGTTGGTGGTTTTATGCCAAACGTTTTATCAGTCAACAGAGTTATGATATCTCTTACAGGAATCGAGATACAGTATCTCCAAGAAACTTACCTCATGGTACTCCAAATACTCGACGCTTCATTTCCCCCTTTCTGCAACTCCAATGCCGATACAAAATGTTTCAATGCCTCTTCATAGGATGAGAGTTGCATACAGGAGATTCCCAAATTGTATCGA</canonical>
            <polymorphic>GAAGAAATCTCTTCTTATCAGTTATCTCTTTTTCTCTGTATATTTCTCCATTCATTAAAAATGAATCATCGAAAACCGGATTGGTTCACAGCTTATCGTCATTTGGAAATTTCATTTTAAACTAGTCAAATTCGAAGTCTAGAAGAAACATTCTAACATTTTTCCGATTTGCTTGAAATTTTCAGAGTGTACTAAACAAAGAATGCGCTTCATTTTTGTAATTGATAATTTTTCTGTACAAATCCAACCAAGTGAAATAAGTGGCTACAAAATGGCCCAATTCTGATTTTAATGATGATTTCGGCAATTTCGGTCCTTTTTTGGTTACGAACTGCATAGTTCATTAGAATGAATCTTGGCCAGAAAGTTGCCAACTACAAAAATAAAGCTCTAATTCTGTTCATTTTACTCGGAAATTTTCAGAAAAATAGACAAATCCTGGGATACTTTTTCAGGAATTCCGATATGGCGATGGATCTTCGGAAATGATTTCTAGATCYAAATTTTCGGATATTGTCTAGATTTGAACTTTTAAAGTTCCATCTGAAAATCACAGAAAGAAAACAAACAAGGGTAATTATTGATTAGAATCCAAAAAACATAAAAATAAAAATTATTCAACCCATCGACGCTTTTACTGCACCCAAATCTCTGGTTTCCACGGCACGAAGTAGGGTTTCAGGGATGTTTGATGTTCGAATGGCTGCGGATCTGAAATGTTAACTTTAAGCCAATTTATCTCGGTTCCTGAAAAAGATACAAAACATTTGTCAACCAGAAAAATGTTGGTGGTTTTATGCCAAACGTTTTATCAGTCAACAGAGTTATGATATCTCTTACAGGAATCGAGATACAGTATCTCCAAGAAACTTACCTCATGGTACTCCAAATACTCGACGCTTCATTTCCCCCTTTCTGCAACTCCAATGCCGATACAAAATGTTTCAATGCCTCTTCATAGGATGAGAGTTGCATACAGGAGATTCCCAAATTGTATCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>474 292 213 21</canonical_bands>
                <polymorphic_bands>474 292 234</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCACAGCTTATCGTCATTTG</pcr_primer_p1>
		<pcr_primer_p2>CTGTGATTTTCAGATGGAACTT</pcr_primer_p2>
		<pcr_amplicon_size>471</pcr_amplicon_size>
		<canonical_amplicon>TCACAGCTTATCGTCATTTGGAAATTTCATTTTAAACTAGTCAAATTCGAAGTCTAGAAGAAACATTCTAACATTTTTCCGATTTGCTTGAAATTTTCAGAGTGTACTAAACAAAGAATGCGCTTCATTTTTGTAATTGATAATTTTTCTGTACAAATCCAACCAAGTGAAATAAGTGGCTACAAAATGGCCCAATTCTGATTTTAATGATGATTTCGGCAATTTCGGTCCTTTTTTGGTTACGAACTGCATAGTTCATTAGAATGAATCTTGGCCAGAAAGTTGCCAACTACAAAAATAAAGCTCTAATTCTGTTCATTTTACTCGGAAATTTTCAGAAAAATAGACAAATCCTGGGATACTTTTTCAGGAATTCCGATATGGCGATGGATCTTCGGAAATGATTTCTAGATCCAAATTTTCGGATATTGTCTAGATTTGAACTTTTAAAGTTCCATCTGAAAATCACAG</canonical_amplicon>
		<polymorphic_amplicon>TCACAGCTTATCGTCATTTGGAAATTTCATTTTAAACTAGTCAAATTCGAAGTCTAGAAGAAACATTCTAACATTTTTCCGATTTGCTTGAAATTTTCAGAGTGTACTAAACAAAGAATGCGCTTCATTTTTGTAATTGATAATTTTTCTGTACAAATCCAACCAAGTGAAATAAGTGGCTACAAAATGGCCCAATTCTGATTTTAATGATGATTTCGGCAATTTCGGTCCTTTTTTGGTTACGAACTGCATAGTTCATTAGAATGAATCTTGGCCAGAAAGTTGCCAACTACAAAAATAAAGCTCTAATTCTGTTCATTTTACTCGGAAATTTTCAGAAAAATAGACAAATCCTGGGATACTTTTTCAGGAATTCCGATATGGCGATGGATCTTCGGAAATGATTTCTAGATCYAAATTTTCGGATATTGTCTAGATTTGAACTTTTAAAGTTCCATCTGAAAATCACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24110</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>99447</contig_pos>
        <strand>+</strand>
        <context>TCTGAAAAAG[A/G]AATTCATAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGCTTCAAAGTTAAAAATTCGGTAAAAAATAATTAGGATCTGAAAAAG</left_flank>
        <right_flank>AATTCATAATTCTTGAAAAAATATCTTGAAATCTGGAAAATCATAATCTC</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACCAAAAATTGCCATTTTTGCATTATAAAAACCAAAAATTTAATCAAAATTTCCCATCAAAAACTACCCAAGAAATAACGGGAAATTTTTTTTGTGGCCGAGTTTTTGCATTTTCTAGGCCACCATTTGGAAAGTTAGGTCATTCTTCGTTTTTGATCGTTTCCAGGCGAATTTTGATAATTTGGCAAGTGACAAACATTTTGTTAGTTGGCACAATTTTGACATCTCTTGCAATAACTGAAATAATTGAGCTCAAAGTTGACGAACCTGCTGCTGACCTAACTTTTGCACTTGATGGCCTAGTTTTTGATTTTCTAGGTTTGCAAATCATGTTACTTTATTTGCCCTGCAGTGAGCTGCAAAATGAGCCCAAACACGACTAGGCTCCACCCACTTTGAGATTTCCTACAGACACGCGACGTACGATATACCACTTCCCGATATTTTTAAAGCTTCAAAGTTAAAAATTCGGTAAAAAATAATTAGGATCTGAAAAAGAAATTCATAATTCTTGAAAAAATATCTTGAAATCTGGAAAATCATAATCTCTTCGAACCTGTAATAGAAGAGATTTCAACTTTGGGCCAACTTATCTAGCTTTCTGTAAGAGATATTAAAAAACGGTCAATTGATAAAGTATTTATCATTTTATCGCAAACATTTTATCAGTTGATTTCTTTTTGATATCTTTCACAAGAAACGTGATAAATTAGCTCAAAGATAGGCTTAGCGTAGTTTTATTGTTTATGAGAAATTCATAAAATTTGCTATTTTTTAATTTTCTTCACCATATTTTTTTTTCTCAGCACATGAGAAATTGGAAAAATAACAATTTTTATGAATGATAAACAGTATTGGGGAGGGAAGAAAATGAGAAATAGTGTGGGAGAAGAAGAGGGAAAGAAGTGGAGGAGATGTGCAAAAAATCGTTCTCATTTTTTCTTGTCTTGTGAAGAGAGGGAAGACAATTTTACATTTTTTCGATTTCTCTTTTTTCTG</canonical>
            <polymorphic>TACCAAAAATTGCCATTTTTGCATTATAAAAACCAAAAATTTAATCAAAATTTCCCATCAAAAACTACCCAAGAAATAACGGGAAATTTTTTTTGTGGCCGAGTTTTTGCATTTTCTAGGCCACCATTTGGAAAGTTAGGTCATTCTTCGTTTTTGATCGTTTCCAGGCGAATTTTGATAATTTGGCAAGTGACAAACATTTTGTTAGTTGGCACAATTTTGACATCTCTTGCAATAACTGAAATAATTGAGCTCAAAGTTGACGAACCTGCTGCTGACCTAACTTTTGCACTTGATGGCCTAGTTTTTGATTTTCTAGGTTTGCAAATCATGTTACTTTATTTGCCCTGCAGTGAGCTGCAAAATGAGCCCAAACACGACTAGGCTCCACCCACTTTGAGATTTCCTACAGACACGCGACGTACGATATACCACTTCCCGATATTTTTAAAGCTTCAAAGTTAAAAATTCGGTAAAAAATAATTAGGATCTGAAAAAGRAATTCATAATTCTTGAAAAAATATCTTGAAATCTGGAAAATCATAATCTCTTCGAACCTGTAATAGAAGAGATTTCAACTTTGGGCCAACTTATCTAGCTTTCTGTAAGAGATATTAAAAAACGGTCAATTGATAAAGTATTTATCATTTTATCGCAAACATTTTATCAGTTGATTTCTTTTTGATATCTTTCACAAGAAACGTGATAAATTAGCTCAAAGATAGGCTTAGCGTAGTTTTATTGTTTATGAGAAATTCATAAAATTTGCTATTTTTTAATTTTCTTCACCATATTTTTTTTTCTCAGCACATGAGAAATTGGAAAAATAACAATTTTTATGAATGATAAACAGTATTGGGGAGGGAAGAAAATGAGAAATAGTGTGGGAGAAGAAGAGGGAAAGAAGTGGAGGAGATGTGCAAAAAATCGTTCTCATTTTTTCTTGTCTTGTGAAGAGAGGGAAGACAATTTTACATTTTTTCGATTTCTCTTTTTTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>296 253 238 86 37 36 34 11 9</canonical_bands>
                <polymorphic_bands>296 287 238 86 37 36 11 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACGATATACCACTTCCCGATA</pcr_primer_p1>
		<pcr_primer_p2>TCATAAACAATAAAACTACGCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>329</pcr_amplicon_size>
		<canonical_amplicon>TACGATATACCACTTCCCGATATTTTTAAAGCTTCAAAGTTAAAAATTCGGTAAAAAATAATTAGGATCTGAAAAAGAAATTCATAATTCTTGAAAAAATATCTTGAAATCTGGAAAATCATAATCTCTTCGAACCTGTAATAGAAGAGATTTCAACTTTGGGCCAACTTATCTAGCTTTCTGTAAGAGATATTAAAAAACGGTCAATTGATAAAGTATTTATCATTTTATCGCAAACATTTTATCAGTTGATTTCTTTTTGATATCTTTCACAAGAAACGTGATAAATTAGCTCAAAGATAGGCTTAGCGTAGTTTTATTGTTTATGA</canonical_amplicon>
		<polymorphic_amplicon>TACGATATACCACTTCCCGATATTTTTAAAGCTTCAAAGTTAAAAATTCGGTAAAAAATAATTAGGATCTGAAAAAGRAATTCATAATTCTTGAAAAAATATCTTGAAATCTGGAAAATCATAATCTCTTCGAACCTGTAATAGAAGAGATTTCAACTTTGGGCCAACTTATCTAGCTTTCTGTAAGAGATATTAAAAAACGGTCAATTGATAAAGTATTTATCATTTTATCGCAAACATTTTATCAGTTGATTTCTTTTTGATATCTTTCACAAGAAACGTGATAAATTAGCTCAAAGATAGGCTTAGCGTAGTTTTATTGTTTATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24111</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>103852</contig_pos>
        <strand>+</strand>
        <context>TCTGGAAAAA[A/C]GTTTTTTCCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGATAAGGGACGAGACGACTCTTCGGGGTTTTGATTGGAATCTGGAAAAA</left_flank>
        <right_flank>GTTTTTTCCTTTTTTGAAGCGTTTTTGAAAGTGTATTTTTTCTAAAATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCCCGGAGGCTTTTCAGATGACGTCAATGGAATCTCCACAGCTTCAGAACATGGCTTCAGAATTGGAATTTGTTTTTCCCGGGGTTTTTCTTTTTCTTTTTCAACGTTAGCCGCTCCAGAACTCCCAGAATTCTTTTCGGGATTTCCAGAAGCTCCAGAAATTGCTCCAGAAGCTACTCCAGAATTCGGTCCAGAATTCAGAAGATTTTCTTCTGAATTCCTCTTCGTGTACGTCGTCTGAGTGACCTGATAAGATCTATGGAATCTCACTTCATCGTCGTTCTCTTTTTTTGAAATTTTCTCGGATTTTTCCGATGGTTTCAGAATTGAAATCACTTCTTCTTCGGTTTTTATCGAAATCGTATCGGAATCTTTTTGAGTCGTTTGAGTTATCGCTTGAGTCGAAGTCTGAGTTGTGGATTTTAAATCGATTGGTGGTAGATTTTCAGATAAGGGACGAGACGACTCTTCGGGGTTTTGATTGGAATCTGGAAAAACGTTTTTTCCTTTTTTGAAGCGTTTTTGAAAGTGTATTTTTTCTAAAATTAAGAAATTCAAAACTAAAAAAAAAGGAACCCAAAAGTTCCAAAATTTTCAATTTATGATATTCTTTGAATTTCCAAATTTTCAGGATTTCCGAATTTCTGAATTTCGAAACTTTTGAATTTTTATACTTTCTGAATAAAAACATTCCGAATTCCTCAATTTTTGAATTCTGATATTCAGAATTTTAAAAACTGAGGATTTTAGGAATTTTTTGAAGTTTTGATTTCTTCGGAATTTCATAATTTCAGAATTCTCGAATTTTAAAATTAGTGAACTTTGAAATTTGAAAAGTTCTCAGAAAAGAAAAAGAATCTCAGAATCTGAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAAACTCAGAATCTCAGAATCTCAGAATCTCAAAATGAAAGAATTTCAGAATCTCAAATTTTAGATTTTTCGAATCTCTAAATTTGGATTTCAACA</canonical>
            <polymorphic>TATCCCGGAGGCTTTTCAGATGACGTCAATGGAATCTCCACAGCTTCAGAACATGGCTTCAGAATTGGAATTTGTTTTTCCCGGGGTTTTTCTTTTTCTTTTTCAACGTTAGCCGCTCCAGAACTCCCAGAATTCTTTTCGGGATTTCCAGAAGCTCCAGAAATTGCTCCAGAAGCTACTCCAGAATTCGGTCCAGAATTCAGAAGATTTTCTTCTGAATTCCTCTTCGTGTACGTCGTCTGAGTGACCTGATAAGATCTATGGAATCTCACTTCATCGTCGTTCTCTTTTTTTGAAATTTTCTCGGATTTTTCCGATGGTTTCAGAATTGAAATCACTTCTTCTTCGGTTTTTATCGAAATCGTATCGGAATCTTTTTGAGTCGTTTGAGTTATCGCTTGAGTCGAAGTCTGAGTTGTGGATTTTAAATCGATTGGTGGTAGATTTTCAGATAAGGGACGAGACGACTCTTCGGGGTTTTGATTGGAATCTGGAAAAAMGTTTTTTCCTTTTTTGAAGCGTTTTTGAAAGTGTATTTTTTCTAAAATTAAGAAATTCAAAACTAAAAAAAAAGGAACCCAAAAGTTCCAAAATTTTCAATTTATGATATTCTTTGAATTTCCAAATTTTCAGGATTTCCGAATTTCTGAATTTCGAAACTTTTGAATTTTTATACTTTCTGAATAAAAACATTCCGAATTCCTCAATTTTTGAATTCTGATATTCAGAATTTTAAAAACTGAGGATTTTAGGAATTTTTTGAAGTTTTGATTTCTTCGGAATTTCATAATTTCAGAATTCTCGAATTTTAAAATTAGTGAACTTTGAAATTTGAAAAGTTCTCAGAAAAGAAAAAGAATCTCAGAATCTGAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAAACTCAGAATCTCAGAATCTCAGAATCTCAAAATGAAAGAATTTCAGAATCTCAAATTTTAGATTTTTCGAATCTCTAAATTTGGATTTCAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>501 393 106</canonical_bands>
                <polymorphic_bands>894 106</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>501 266 127 83 23</canonical_bands>
                <polymorphic_bands>767 127 83 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTTGAGTCGTTTGAGTTAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGGAAATTCAAAGAATATCAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTTGAGTCGTTTGAGTTATCGCTTGAGTCGAAGTCTGAGTTGTGGATTTTAAATCGATTGGTGGTAGATTTTCAGATAAGGGACGAGACGACTCTTCGGGGTTTTGATTGGAATCTGGAAAAACGTTTTTTCCTTTTTTGAAGCGTTTTTGAAAGTGTATTTTTTCTAAAATTAAGAAATTCAAAACTAAAAAAAAAGGAACCCAAAAGTTCCAAAATTTTCAATTTATGATATTCTTTGAATTTCCAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTTGAGTCGTTTGAGTTATCGCTTGAGTCGAAGTCTGAGTTGTGGATTTTAAATCGATTGGTGGTAGATTTTCAGATAAGGGACGAGACGACTCTTCGGGGTTTTGATTGGAATCTGGAAAAAMGTTTTTTCCTTTTTTGAAGCGTTTTTGAAAGTGTATTTTTTCTAAAATTAAGAAATTCAAAACTAAAAAAAAAGGAACCCAAAAGTTCCAAAATTTTCAATTTATGATATTCTTTGAATTTCCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24112</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>103905</contig_pos>
        <strand>+</strand>
        <context>TAAAATTAAG[A/C]AATTCAAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTTCCTTTTTTGAAGCGTTTTTGAAAGTGTATTTTTTCTAAAATTAAG</left_flank>
        <right_flank>AATTCAAAACTAAAAAAAAAGGAACCCAAAAGTTCCAAAATTTTCAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGCTTCAGAATTGGAATTTGTTTTTCCCGGGGTTTTTCTTTTTCTTTTTCAACGTTAGCCGCTCCAGAACTCCCAGAATTCTTTTCGGGATTTCCAGAAGCTCCAGAAATTGCTCCAGAAGCTACTCCAGAATTCGGTCCAGAATTCAGAAGATTTTCTTCTGAATTCCTCTTCGTGTACGTCGTCTGAGTGACCTGATAAGATCTATGGAATCTCACTTCATCGTCGTTCTCTTTTTTTGAAATTTTCTCGGATTTTTCCGATGGTTTCAGAATTGAAATCACTTCTTCTTCGGTTTTTATCGAAATCGTATCGGAATCTTTTTGAGTCGTTTGAGTTATCGCTTGAGTCGAAGTCTGAGTTGTGGATTTTAAATCGATTGGTGGTAGATTTTCAGATAAGGGACGAGACGACTCTTCGGGGTTTTGATTGGAATCTGGAAAAACGTTTTTTCCTTTTTTGAAGCGTTTTTGAAAGTGTATTTTTTCTAAAATTAAGAAATTCAAAACTAAAAAAAAAGGAACCCAAAAGTTCCAAAATTTTCAATTTATGATATTCTTTGAATTTCCAAATTTTCAGGATTTCCGAATTTCTGAATTTCGAAACTTTTGAATTTTTATACTTTCTGAATAAAAACATTCCGAATTCCTCAATTTTTGAATTCTGATATTCAGAATTTTAAAAACTGAGGATTTTAGGAATTTTTTGAAGTTTTGATTTCTTCGGAATTTCATAATTTCAGAATTCTCGAATTTTAAAATTAGTGAACTTTGAAATTTGAAAAGTTCTCAGAAAAGAAAAAGAATCTCAGAATCTGAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAAACTCAGAATCTCAGAATCTCAGAATCTCAAAATGAAAGAATTTCAGAATCTCAAATTTTAGATTTTTCGAATCTCTAAATTTGGATTTCAACAATTTTGAATTTCAGAGAGTCAGAACTTATGAATCCGACTGTTATGAACAAGAT</canonical>
            <polymorphic>TGGCTTCAGAATTGGAATTTGTTTTTCCCGGGGTTTTTCTTTTTCTTTTTCAACGTTAGCCGCTCCAGAACTCCCAGAATTCTTTTCGGGATTTCCAGAAGCTCCAGAAATTGCTCCAGAAGCTACTCCAGAATTCGGTCCAGAATTCAGAAGATTTTCTTCTGAATTCCTCTTCGTGTACGTCGTCTGAGTGACCTGATAAGATCTATGGAATCTCACTTCATCGTCGTTCTCTTTTTTTGAAATTTTCTCGGATTTTTCCGATGGTTTCAGAATTGAAATCACTTCTTCTTCGGTTTTTATCGAAATCGTATCGGAATCTTTTTGAGTCGTTTGAGTTATCGCTTGAGTCGAAGTCTGAGTTGTGGATTTTAAATCGATTGGTGGTAGATTTTCAGATAAGGGACGAGACGACTCTTCGGGGTTTTGATTGGAATCTGGAAAAACGTTTTTTCCTTTTTTGAAGCGTTTTTGAAAGTGTATTTTTTCTAAAATTAAGMAATTCAAAACTAAAAAAAAAGGAACCCAAAAGTTCCAAAATTTTCAATTTATGATATTCTTTGAATTTCCAAATTTTCAGGATTTCCGAATTTCTGAATTTCGAAACTTTTGAATTTTTATACTTTCTGAATAAAAACATTCCGAATTCCTCAATTTTTGAATTCTGATATTCAGAATTTTAAAAACTGAGGATTTTAGGAATTTTTTGAAGTTTTGATTTCTTCGGAATTTCATAATTTCAGAATTCTCGAATTTTAAAATTAGTGAACTTTGAAATTTGAAAAGTTCTCAGAAAAGAAAAAGAATCTCAGAATCTGAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAAACTCAGAATCTCAGAATCTCAGAATCTCAAAATGAAAGAATTTCAGAATCTCAAATTTTAGATTTTTCGAATCTCTAAATTTGGATTTCAACAATTTTGAATTTCAGAGAGTCAGAACTTATGAATCCGACTGTTATGAACAAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>257 117 79 62 54 47 38 32 27 25 25 24 24 22 21 17 16 16 16 15 15 15 12 8 8 8</canonical_bands>
                <polymorphic_bands>295 117 79 62 54 47 32 27 25 25 24 24 22 21 17 16 16 16 15 15 15 12 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTTGAGTCGTTTGAGTTAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGGAAATTCAAAGAATATCAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTTGAGTCGTTTGAGTTATCGCTTGAGTCGAAGTCTGAGTTGTGGATTTTAAATCGATTGGTGGTAGATTTTCAGATAAGGGACGAGACGACTCTTCGGGGTTTTGATTGGAATCTGGAAAAACGTTTTTTCCTTTTTTGAAGCGTTTTTGAAAGTGTATTTTTTCTAAAATTAAGAAATTCAAAACTAAAAAAAAAGGAACCCAAAAGTTCCAAAATTTTCAATTTATGATATTCTTTGAATTTCCAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTTGAGTCGTTTGAGTTATCGCTTGAGTCGAAGTCTGAGTTGTGGATTTTAAATCGATTGGTGGTAGATTTTCAGATAAGGGACGAGACGACTCTTCGGGGTTTTGATTGGAATCTGGAAAAACGTTTTTTCCTTTTTTGAAGCGTTTTTGAAAGTGTATTTTTTCTAAAATTAAGMAATTCAAAACTAAAAAAAAAGGAACCCAAAAGTTCCAAAATTTTCAATTTATGATATTCTTTGAATTTCCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24113</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>123724</contig_pos>
        <strand></strand>
        <context>attttaaCTT[T/C]TSAAACTCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCTGCAAAACTCAAAATGTTAAAAATTTGAATTTAAAAAATTTTAACTT</left_flank>
        <right_flank>TCAAACTCGAAAAATACTGAAAATTGGAAAGCTTTTAATCGAGAAATTTA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTTCGAAAATGTATTTTTGAAATTTCTGAAACTTCAGAAGAACAAAAACTCGATAATTCGAAAATTTGAGAATTCCAAAATTTGAAAAATAGAGAATTCGAAAATTTTGTGAAAATTTGGAACTTCAATGGTTCAGAATTTTCAAATTTCAAAATTCAAAAAAAAATCGAAAATTCAGAAATTCCGAGAATTCGGAAAATGCGGAATTTAAAAAATTGAATATTCAAATCTGAAGAAGATTCAGCGCTAAAAAGTTGAAGTTTCCGAATTTGAATTTTTGAAAAAATTCGAAAAATTAGAAATCTGAGAATTCCATTTTCTCAATATCTGAAATTGCAAAAAAAAACTGAATTTCAAAAATATGGATATTTCAGAAATTTATCAAAATTCGAAATTTTGAAAACTTCAAAAAATCATAGTTTCCAAAAATTTTAAATTTTCGAGAATTCTGCAAAACTCAAAATGTTAAAAATTTGAATTTAAAAAATTTTAACTTTTCAAACTCGAAAAATACTGAAAATTGGAAAGCTTTTAATCGAGAAATTTATAATTCTTGAAATTAAAAAAAAACATAGAAAAACTCGATATTTTGGAATTTCTAAAATATGAAATTTCAAAGTTCAGAAATACAGAAATTTGAAAATTCGGGAATTTCAAAATGTTCGAAATTTCAGAGTTCAAGTTTTTTCAATATTCAAATTTTAAGAATATTTTTTTTTAATTTCAGTGTCTCAACACAGAACTGCTCCGTTTGGATAAATATCTCTCGGAGCACGGCACCCGCTTCTTGCTCTCCGACGACATTGCTCATCTGGATTGTCTCGTCTTGACCAGACTCCATTCGATTCGCATTGCTGCCAAGGTGAGTGAACATCCGGACACACATAAACACAGAAACTTCCAAATTTAGGCTCTCAAAAACTACGAATTCCCGCCGGATTTGACGCATCTTTGGGACTATTTGAAGTCTGGTTACGATTTGGAAATGTTCCGATTA</canonical>
            <polymorphic>AAACTTCGAAAATGTATTTTTGAAATTTCTGAAACTTCAGAAGAACAAAAACTCGATAATTCGAAAATTTGAGAATTCCAAAATTTGAAAAATAGAGAATTCGAAAATTTTGTGAAAATTTGGAACTTCAATGGTTCAGAATTTTCAAATTTCAAAATTCAAAAAAAAATCGAAAATTCAGAAATTCCGAGAATTCGGAAAATGCGGAATTTAAAAAATTGAATATTCAAATCTGAAGAAGATTCAGCGCTAAAAAGTTGAAGTTTCCGAATTTGAATTTTTGAAAAAATTCGAAAAATTAGAAATCTGAGAATTCCATTTTCTCAATATCTGAAATTGCAAAAAAAAACTGAATTTCAAAAATATGGATATTTCAGAAATTTATCAAAATTCGAAATTTTGAAAACTTCAAAAAATCATAGTTTCCAAAAATTTTAAATTTTCGAGAATTCTGCAAAACTCAAAATGTTAAAAATTTGAATTTAAAAAATTTTAACTTYTCAAACTCGAAAAATACTGAAAATTGGAAAGCTTTTAATCGAGAAATTTATAATTCTTGAAATTAAAAAAAAACATAGAAAAACTCGATATTTTGGAATTTCTAAAATATGAAATTTCAAAGTTCAGAAATACAGAAATTTGAAAATTCGGGAATTTCAAAATGTTCGAAATTTCAGAGTTCAAGTTTTTTCAATATTCAAATTTTAAGAATATTTTTTTTTAATTTCAGTGTCTCAACACAGAACTGCTCCGTTTGGATAAATATCTCTCGGAGCACGGCACCCGCTTCTTGCTCTCCGACGACATTGCTCATCTGGATTGTCTCGTCTTGACCAGACTCCATTCGATTCGCATTGCTGCCAAGGTGAGTGAACATCCGGACACACATAAACACAGAAACTTCCAAATTTAGGCTCTCAAAAACTACGAATTCCCGCCGGATTTGACGCATCTTTGGGACTATTTGAAGTCTGGTTACGATTTGGAAATGTTCCGATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAATTCTGCAAAACTCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GCAGTTCTGTGTTGAGACACT</pcr_primer_p2>
		<pcr_amplicon_size>304</pcr_amplicon_size>
		<canonical_amplicon>AGAATTCTGCAAAACTCAAAATGTTAAAAATTTGAATTTAAAAAATTTTAACTTTTCAAACTCGAAAAATACTGAAAATTGGAAAGCTTTTAATCGAGAAATTTATAATTCTTGAAATTAAAAAAAAACATAGAAAAACTCGATATTTTGGAATTTCTAAAATATGAAATTTCAAAGTTCAGAAATACAGAAATTTGAAAATTCGGGAATTTCAAAATGTTCGAAATTTCAGAGTTCAAGTTTTTTCAATATTCAAATTTTAAGAATATTTTTTTTTAATTTCAGTGTCTCAACACAGAACTGC</canonical_amplicon>
		<polymorphic_amplicon>AGAATTCTGCAAAACTCAAAATGTTAAAAATTTGAATTTAAAAAATTTTAACTTYTCAAACTCGAAAAATACTGAAAATTGGAAAGCTTTTAATCGAGAAATTTATAATTCTTGAAATTAAAAAAAAACATAGAAAAACTCGATATTTTGGAATTTCTAAAATATGAAATTTCAAAGTTCAGAAATACAGAAATTTGAAAATTCGGGAATTTCAAAATGTTCGAAATTTCAGAGTTCAAGTTTTTTCAATATTCAAATTTTAAGAATATTTTTTTTTAATTTCAGTGTCTCAACACAGAACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24114</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>123726</contig_pos>
        <strand></strand>
        <context>tttaaCTTYT[C/G]AAACTCGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTGCAAAACTCAAAATGTTAAAAATTTGAATTTAAAAAATTTTAACTTTT</left_flank>
        <right_flank>AAACTCGAAAAATACTGAAAATTGGAAAGCTTTTAATCGAGAAATTTATA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTCGAAAATGTATTTTTGAAATTTCTGAAACTTCAGAAGAACAAAAACTCGATAATTCGAAAATTTGAGAATTCCAAAATTTGAAAAATAGAGAATTCGAAAATTTTGTGAAAATTTGGAACTTCAATGGTTCAGAATTTTCAAATTTCAAAATTCAAAAAAAAATCGAAAATTCAGAAATTCCGAGAATTCGGAAAATGCGGAATTTAAAAAATTGAATATTCAAATCTGAAGAAGATTCAGCGCTAAAAAGTTGAAGTTTCCGAATTTGAATTTTTGAAAAAATTCGAAAAATTAGAAATCTGAGAATTCCATTTTCTCAATATCTGAAATTGCAAAAAAAAACTGAATTTCAAAAATATGGATATTTCAGAAATTTATCAAAATTCGAAATTTTGAAAACTTCAAAAAATCATAGTTTCCAAAAATTTTAAATTTTCGAGAATTCTGCAAAACTCAAAATGTTAAAAATTTGAATTTAAAAAATTTTAACTTTTCAAACTCGAAAAATACTGAAAATTGGAAAGCTTTTAATCGAGAAATTTATAATTCTTGAAATTAAAAAAAAACATAGAAAAACTCGATATTTTGGAATTTCTAAAATATGAAATTTCAAAGTTCAGAAATACAGAAATTTGAAAATTCGGGAATTTCAAAATGTTCGAAATTTCAGAGTTCAAGTTTTTTCAATATTCAAATTTTAAGAATATTTTTTTTTAATTTCAGTGTCTCAACACAGAACTGCTCCGTTTGGATAAATATCTCTCGGAGCACGGCACCCGCTTCTTGCTCTCCGACGACATTGCTCATCTGGATTGTCTCGTCTTGACCAGACTCCATTCGATTCGCATTGCTGCCAAGGTGAGTGAACATCCGGACACACATAAACACAGAAACTTCCAAATTTAGGCTCTCAAAAACTACGAATTCCCGCCGGATTTGACGCATCTTTGGGACTATTTGAAGTCTGGTTACGATTTGGAAATGTTCCGATTATC</canonical>
            <polymorphic>ACTTCGAAAATGTATTTTTGAAATTTCTGAAACTTCAGAAGAACAAAAACTCGATAATTCGAAAATTTGAGAATTCCAAAATTTGAAAAATAGAGAATTCGAAAATTTTGTGAAAATTTGGAACTTCAATGGTTCAGAATTTTCAAATTTCAAAATTCAAAAAAAAATCGAAAATTCAGAAATTCCGAGAATTCGGAAAATGCGGAATTTAAAAAATTGAATATTCAAATCTGAAGAAGATTCAGCGCTAAAAAGTTGAAGTTTCCGAATTTGAATTTTTGAAAAAATTCGAAAAATTAGAAATCTGAGAATTCCATTTTCTCAATATCTGAAATTGCAAAAAAAAACTGAATTTCAAAAATATGGATATTTCAGAAATTTATCAAAATTCGAAATTTTGAAAACTTCAAAAAATCATAGTTTCCAAAAATTTTAAATTTTCGAGAATTCTGCAAAACTCAAAATGTTAAAAATTTGAATTTAAAAAATTTTAACTTTTSAAACTCGAAAAATACTGAAAATTGGAAAGCTTTTAATCGAGAAATTTATAATTCTTGAAATTAAAAAAAAACATAGAAAAACTCGATATTTTGGAATTTCTAAAATATGAAATTTCAAAGTTCAGAAATACAGAAATTTGAAAATTCGGGAATTTCAAAATGTTCGAAATTTCAGAGTTCAAGTTTTTTCAATATTCAAATTTTAAGAATATTTTTTTTTAATTTCAGTGTCTCAACACAGAACTGCTCCGTTTGGATAAATATCTCTCGGAGCACGGCACCCGCTTCTTGCTCTCCGACGACATTGCTCATCTGGATTGTCTCGTCTTGACCAGACTCCATTCGATTCGCATTGCTGCCAAGGTGAGTGAACATCCGGACACACATAAACACAGAAACTTCCAAATTTAGGCTCTCAAAAACTACGAATTCCCGCCGGATTTGACGCATCTTTGGGACTATTTGAAGTCTGGTTACGATTTGGAAATGTTCCGATTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAATTCTGCAAAACTCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GCAGTTCTGTGTTGAGACACT</pcr_primer_p2>
		<pcr_amplicon_size>304</pcr_amplicon_size>
		<canonical_amplicon>AGAATTCTGCAAAACTCAAAATGTTAAAAATTTGAATTTAAAAAATTTTAACTTTTCAAACTCGAAAAATACTGAAAATTGGAAAGCTTTTAATCGAGAAATTTATAATTCTTGAAATTAAAAAAAAACATAGAAAAACTCGATATTTTGGAATTTCTAAAATATGAAATTTCAAAGTTCAGAAATACAGAAATTTGAAAATTCGGGAATTTCAAAATGTTCGAAATTTCAGAGTTCAAGTTTTTTCAATATTCAAATTTTAAGAATATTTTTTTTTAATTTCAGTGTCTCAACACAGAACTGC</canonical_amplicon>
		<polymorphic_amplicon>AGAATTCTGCAAAACTCAAAATGTTAAAAATTTGAATTTAAAAAATTTTAACTTTTSAAACTCGAAAAATACTGAAAATTGGAAAGCTTTTAATCGAGAAATTTATAATTCTTGAAATTAAAAAAAAACATAGAAAAACTCGATATTTTGGAATTTCTAAAATATGAAATTTCAAAGTTCAGAAATACAGAAATTTGAAAATTCGGGAATTTCAAAATGTTCGAAATTTCAGAGTTCAAGTTTTTTCAATATTCAAATTTTAAGAATATTTTTTTTTAATTTCAGTGTCTCAACACAGAACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24115</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>123748</contig_pos>
        <strand></strand>
        <context>ATACTGAAAA[T/C]TGGAAAGCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATTTGAATTTAAAAAATTTTAACTTTTCAAACTCGAAAAATACTGAAAA</left_flank>
        <right_flank>TGGAAAGCTTTTAATCGAGAAATTTATAATTCTTGAAATTAAAAAAAAAC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCTGAAACTTCAGAAGAACAAAAACTCGATAATTCGAAAATTTGAGAATTCCAAAATTTGAAAAATAGAGAATTCGAAAATTTTGTGAAAATTTGGAACTTCAATGGTTCAGAATTTTCAAATTTCAAAATTCAAAAAAAAATCGAAAATTCAGAAATTCCGAGAATTCGGAAAATGCGGAATTTAAAAAATTGAATATTCAAATCTGAAGAAGATTCAGCGCTAAAAAGTTGAAGTTTCCGAATTTGAATTTTTGAAAAAATTCGAAAAATTAGAAATCTGAGAATTCCATTTTCTCAATATCTGAAATTGCAAAAAAAAACTGAATTTCAAAAATATGGATATTTCAGAAATTTATCAAAATTCGAAATTTTGAAAACTTCAAAAAATCATAGTTTCCAAAAATTTTAAATTTTCGAGAATTCTGCAAAACTCAAAATGTTAAAAATTTGAATTTAAAAAATTTTAACTTTTCAAACTCGAAAAATACTGAAAATTGGAAAGCTTTTAATCGAGAAATTTATAATTCTTGAAATTAAAAAAAAACATAGAAAAACTCGATATTTTGGAATTTCTAAAATATGAAATTTCAAAGTTCAGAAATACAGAAATTTGAAAATTCGGGAATTTCAAAATGTTCGAAATTTCAGAGTTCAAGTTTTTTCAATATTCAAATTTTAAGAATATTTTTTTTTAATTTCAGTGTCTCAACACAGAACTGCTCCGTTTGGATAAATATCTCTCGGAGCACGGCACCCGCTTCTTGCTCTCCGACGACATTGCTCATCTGGATTGTCTCGTCTTGACCAGACTCCATTCGATTCGCATTGCTGCCAAGGTGAGTGAACATCCGGACACACATAAACACAGAAACTTCCAAATTTAGGCTCTCAAAAACTACGAATTCCCGCCGGATTTGACGCATCTTTGGGACTATTTGAAGTCTGGTTACGATTTGGAAATGTTCCGATTATCGTGTCCATCGGATCAAGAGATC</canonical>
            <polymorphic>ATTTCTGAAACTTCAGAAGAACAAAAACTCGATAATTCGAAAATTTGAGAATTCCAAAATTTGAAAAATAGAGAATTCGAAAATTTTGTGAAAATTTGGAACTTCAATGGTTCAGAATTTTCAAATTTCAAAATTCAAAAAAAAATCGAAAATTCAGAAATTCCGAGAATTCGGAAAATGCGGAATTTAAAAAATTGAATATTCAAATCTGAAGAAGATTCAGCGCTAAAAAGTTGAAGTTTCCGAATTTGAATTTTTGAAAAAATTCGAAAAATTAGAAATCTGAGAATTCCATTTTCTCAATATCTGAAATTGCAAAAAAAAACTGAATTTCAAAAATATGGATATTTCAGAAATTTATCAAAATTCGAAATTTTGAAAACTTCAAAAAATCATAGTTTCCAAAAATTTTAAATTTTCGAGAATTCTGCAAAACTCAAAATGTTAAAAATTTGAATTTAAAAAATTTTAACTTTTCAAACTCGAAAAATACTGAAAAYTGGAAAGCTTTTAATCGAGAAATTTATAATTCTTGAAATTAAAAAAAAACATAGAAAAACTCGATATTTTGGAATTTCTAAAATATGAAATTTCAAAGTTCAGAAATACAGAAATTTGAAAATTCGGGAATTTCAAAATGTTCGAAATTTCAGAGTTCAAGTTTTTTCAATATTCAAATTTTAAGAATATTTTTTTTTAATTTCAGTGTCTCAACACAGAACTGCTCCGTTTGGATAAATATCTCTCGGAGCACGGCACCCGCTTCTTGCTCTCCGACGACATTGCTCATCTGGATTGTCTCGTCTTGACCAGACTCCATTCGATTCGCATTGCTGCCAAGGTGAGTGAACATCCGGACACACATAAACACAGAAACTTCCAAATTTAGGCTCTCAAAAACTACGAATTCCCGCCGGATTTGACGCATCTTTGGGACTATTTGAAGTCTGGTTACGATTTGGAAATGTTCCGATTATCGTGTCCATCGGATCAAGAGATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>184 95 53 36 35 33 33 31 26 26 24 23 23 23 23 22 19 18 17 16 16 16 15 12 11 10 10 9 9 9 9 9 8 8 8 8 8 8 8 8 8 7 7 7 6 6</canonical_bands>
                <polymorphic_bands>184 95 56 53 36 35 33 31 26 26 24 23 23 23 22 19 18 17 16 16 16 15 12 11 10 10 9 9 9 9 9 8 8 8 8 8 8 8 8 8 7 7 7 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAATTCTGCAAAACTCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GCAGTTCTGTGTTGAGACACT</pcr_primer_p2>
		<pcr_amplicon_size>304</pcr_amplicon_size>
		<canonical_amplicon>AGAATTCTGCAAAACTCAAAATGTTAAAAATTTGAATTTAAAAAATTTTAACTTTTCAAACTCGAAAAATACTGAAAATTGGAAAGCTTTTAATCGAGAAATTTATAATTCTTGAAATTAAAAAAAAACATAGAAAAACTCGATATTTTGGAATTTCTAAAATATGAAATTTCAAAGTTCAGAAATACAGAAATTTGAAAATTCGGGAATTTCAAAATGTTCGAAATTTCAGAGTTCAAGTTTTTTCAATATTCAAATTTTAAGAATATTTTTTTTTAATTTCAGTGTCTCAACACAGAACTGC</canonical_amplicon>
		<polymorphic_amplicon>AGAATTCTGCAAAACTCAAAATGTTAAAAATTTGAATTTAAAAAATTTTAACTTTTCAAACTCGAAAAATACTGAAAAYTGGAAAGCTTTTAATCGAGAAATTTATAATTCTTGAAATTAAAAAAAAACATAGAAAAACTCGATATTTTGGAATTTCTAAAATATGAAATTTCAAAGTTCAGAAATACAGAAATTTGAAAATTCGGGAATTTCAAAATGTTCGAAATTTCAGAGTTCAAGTTTTTTCAATATTCAAATTTTAAGAATATTTTTTTTTAATTTCAGTGTCTCAACACAGAACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24116</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>125581</contig_pos>
        <strand></strand>
        <context>atttaatggg[T/A]ttttgaattt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTCTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGG</left_flank>
        <right_flank>TTTTGAATTTTCGAAATCTCAATTTTTAGAATTTTTACGTTCTGAATCTC</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCACGCGGGCAAAGAGGAAGCGGCCGCCCGATATAAGGGGGAGGACGACAGCTGTACGCAGATGTTCACCGTTACGGTAGAATGCATACCCTGGCTCCAAAAATCCTCCGAAAAATCTCCTGTCCCCCCCACCTTTAATTTCGGGATTTGTGGAATCTTTTTTTAAACATTTTAGGGGTTTCTGATTTTTTGAATTCCAAAATTTCAGAAATTTCGGATATTTGAAAAATGGAATTTCTAGATTCTCAATTTTCAAATTTCCCGAATGTCCCCAGATTACAAAACTTTGATTCTCCAACTTTGTGATGTTTTAATTTTCAAAATTTTTGGAAATTCTGAATTTCCGAATTTCAAAAGTTCTGAAACCTTAGGAATTTGCGAATTCCTTAAAGTTGGAATTTCAGAAAATTCGAAACTTCAGAGTTTGTGAACATCAGAATTTTCGAATTTCTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGGTTTTTGAATTTTCGAAATCTCAATTTTTAGAATTTTTACGTTCTGAATCTCGGAAATCAAAATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGATCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTTCTATACAATATTAATAAATGGATTTTCAGCAATTTCAGAGTTTTCTGAACCACTTTTCGAATAACCACCAATTTTTTTTTGAATTTTGCCATTCCAAATTTTAAAAAGAATTTTTACCTCATTCCCTTCTCTCTCCTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTC</canonical>
            <polymorphic>AGCCACGCGGGCAAAGAGGAAGCGGCCGCCCGATATAAGGGGGAGGACGACAGCTGTACGCAGATGTTCACCGTTACGGTAGAATGCATACCCTGGCTCCAAAAATCCTCCGAAAAATCTCCTGTCCCCCCCACCTTTAATTTCGGGATTTGTGGAATCTTTTTTTAAACATTTTAGGGGTTTCTGATTTTTTGAATTCCAAAATTTCAGAAATTTCGGATATTTGAAAAATGGAATTTCTAGATTCTCAATTTTCAAATTTCCCGAATGTCCCCAGATTACAAAACTTTGATTCTCCAACTTTGTGATGTTTTAATTTTCAAAATTTTTGGAAATTCTGAATTTCCGAATTTCAAAAGTTCTGAAACCTTAGGAATTTGCGAATTCCTTAAAGTTGGAATTTCAGAAAATTCGAAACTTCAGAGTTTGTGAACATCAGAATTTTCGAATTTCTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGGWTTTTGAATTTTCGAAATCTCAATTTTTAGAATTTTTACGTTCTGAATCTCGGAAATCAAAATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGATCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTTCTATACAATATTAATAAATGGATTTTCAGCAATTTCAGAGTTTTCTGAACCACTTTTCGAATAACCACCAATTTTTTTTTGAATTTTGCCATTCCAAATTTTAAAAAGAATTTTTACCTCATTCCCTTCTCTCTCCTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTAATTTCGGGATTTGTG</pcr_primer_p1>
		<pcr_primer_p2>AAACTTCAAAATGTCATAAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>628</pcr_amplicon_size>
		<canonical_amplicon>CTTTAATTTCGGGATTTGTGGAATCTTTTTTTAAACATTTTAGGGGTTTCTGATTTTTTGAATTCCAAAATTTCAGAAATTTCGGATATTTGAAAAATGGAATTTCTAGATTCTCAATTTTCAAATTTCCCGAATGTCCCCAGATTACAAAACTTTGATTCTCCAACTTTGTGATGTTTTAATTTTCAAAATTTTTGGAAATTCTGAATTTCCGAATTTCAAAAGTTCTGAAACCTTAGGAATTTGCGAATTCCTTAAAGTTGGAATTTCAGAAAATTCGAAACTTCAGAGTTTGTGAACATCAGAATTTTCGAATTTCTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGGTTTTTGAATTTTCGAAATCTCAATTTTTAGAATTTTTACGTTCTGAATCTCGGAAATCAAAATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGATCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTAATTTCGGGATTTGTGGAATCTTTTTTTAAACATTTTAGGGGTTTCTGATTTTTTGAATTCCAAAATTTCAGAAATTTCGGATATTTGAAAAATGGAATTTCTAGATTCTCAATTTTCAAATTTCCCGAATGTCCCCAGATTACAAAACTTTGATTCTCCAACTTTGTGATGTTTTAATTTTCAAAATTTTTGGAAATTCTGAATTTCCGAATTTCAAAAGTTCTGAAACCTTAGGAATTTGCGAATTCCTTAAAGTTGGAATTTCAGAAAATTCGAAACTTCAGAGTTTGTGAACATCAGAATTTTCGAATTTCTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGGWTTTTGAATTTTCGAAATCTCAATTTTTAGAATTTTTACGTTCTGAATCTCGGAAATCAAAATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGATCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24117</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>125609</contig_pos>
        <strand></strand>
        <context>ctcaattttt[A/G]gaattttkac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAATTTTCAAATTTAATGGGTTTTTGAATTTTCGAAATCTCAATTTTT</left_flank>
        <right_flank>GAATTTTTACGTTCTGAATCTCGGAAATCAAAATTAGAGAAATTCGAAAA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCGATATAAGGGGGAGGACGACAGCTGTACGCAGATGTTCACCGTTACGGTAGAATGCATACCCTGGCTCCAAAAATCCTCCGAAAAATCTCCTGTCCCCCCCACCTTTAATTTCGGGATTTGTGGAATCTTTTTTTAAACATTTTAGGGGTTTCTGATTTTTTGAATTCCAAAATTTCAGAAATTTCGGATATTTGAAAAATGGAATTTCTAGATTCTCAATTTTCAAATTTCCCGAATGTCCCCAGATTACAAAACTTTGATTCTCCAACTTTGTGATGTTTTAATTTTCAAAATTTTTGGAAATTCTGAATTTCCGAATTTCAAAAGTTCTGAAACCTTAGGAATTTGCGAATTCCTTAAAGTTGGAATTTCAGAAAATTCGAAACTTCAGAGTTTGTGAACATCAGAATTTTCGAATTTCTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGGTTTTTGAATTTTCGAAATCTCAATTTTTAGAATTTTTACGTTCTGAATCTCGGAAATCAAAATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGATCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTTCTATACAATATTAATAAATGGATTTTCAGCAATTTCAGAGTTTTCTGAACCACTTTTCGAATAACCACCAATTTTTTTTTGAATTTTGCCATTCCAAATTTTAAAAAGAATTTTTACCTCATTCCCTTCTCTCTCCTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAGTTCCATAGCATTATAATATTTTATTA</canonical>
            <polymorphic>CCCGATATAAGGGGGAGGACGACAGCTGTACGCAGATGTTCACCGTTACGGTAGAATGCATACCCTGGCTCCAAAAATCCTCCGAAAAATCTCCTGTCCCCCCCACCTTTAATTTCGGGATTTGTGGAATCTTTTTTTAAACATTTTAGGGGTTTCTGATTTTTTGAATTCCAAAATTTCAGAAATTTCGGATATTTGAAAAATGGAATTTCTAGATTCTCAATTTTCAAATTTCCCGAATGTCCCCAGATTACAAAACTTTGATTCTCCAACTTTGTGATGTTTTAATTTTCAAAATTTTTGGAAATTCTGAATTTCCGAATTTCAAAAGTTCTGAAACCTTAGGAATTTGCGAATTCCTTAAAGTTGGAATTTCAGAAAATTCGAAACTTCAGAGTTTGTGAACATCAGAATTTTCGAATTTCTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGGTTTTTGAATTTTCGAAATCTCAATTTTTRGAATTTTTACGTTCTGAATCTCGGAAATCAAAATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGATCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTTCTATACAATATTAATAAATGGATTTTCAGCAATTTCAGAGTTTTCTGAACCACTTTTCGAATAACCACCAATTTTTTTTTGAATTTTGCCATTCCAAATTTTAAAAAGAATTTTTACCTCATTCCCTTCTCTCTCCTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAGTTCCATAGCATTATAATATTTTATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTAATTTCGGGATTTGTG</pcr_primer_p1>
		<pcr_primer_p2>AAACTTCAAAATGTCATAAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>628</pcr_amplicon_size>
		<canonical_amplicon>CTTTAATTTCGGGATTTGTGGAATCTTTTTTTAAACATTTTAGGGGTTTCTGATTTTTTGAATTCCAAAATTTCAGAAATTTCGGATATTTGAAAAATGGAATTTCTAGATTCTCAATTTTCAAATTTCCCGAATGTCCCCAGATTACAAAACTTTGATTCTCCAACTTTGTGATGTTTTAATTTTCAAAATTTTTGGAAATTCTGAATTTCCGAATTTCAAAAGTTCTGAAACCTTAGGAATTTGCGAATTCCTTAAAGTTGGAATTTCAGAAAATTCGAAACTTCAGAGTTTGTGAACATCAGAATTTTCGAATTTCTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGGTTTTTGAATTTTCGAAATCTCAATTTTTAGAATTTTTACGTTCTGAATCTCGGAAATCAAAATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGATCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTAATTTCGGGATTTGTGGAATCTTTTTTTAAACATTTTAGGGGTTTCTGATTTTTTGAATTCCAAAATTTCAGAAATTTCGGATATTTGAAAAATGGAATTTCTAGATTCTCAATTTTCAAATTTCCCGAATGTCCCCAGATTACAAAACTTTGATTCTCCAACTTTGTGATGTTTTAATTTTCAAAATTTTTGGAAATTCTGAATTTCCGAATTTCAAAAGTTCTGAAACCTTAGGAATTTGCGAATTCCTTAAAGTTGGAATTTCAGAAAATTCGAAACTTCAGAGTTTGTGAACATCAGAATTTTCGAATTTCTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGGTTTTTGAATTTTCGAAATCTCAATTTTTRGAATTTTTACGTTCTGAATCTCGGAAATCAAAATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGATCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24118</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>125617</contig_pos>
        <strand></strand>
        <context>ttrgaatttt[T/G]acgttctgaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TCAAATTTAATGGGTTTTTGAATTTTCGAAATCTCAATTTTTAGAATTTT</left_flank>
        <right_flank>ACGTTCTGAATCTCGGAAATCAAAATTAGAGAAATTCGAAAATTCGGAAT</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGGGGAGGACGACAGCTGTACGCAGATGTTCACCGTTACGGTAGAATGCATACCCTGGCTCCAAAAATCCTCCGAAAAATCTCCTGTCCCCCCCACCTTTAATTTCGGGATTTGTGGAATCTTTTTTTAAACATTTTAGGGGTTTCTGATTTTTTGAATTCCAAAATTTCAGAAATTTCGGATATTTGAAAAATGGAATTTCTAGATTCTCAATTTTCAAATTTCCCGAATGTCCCCAGATTACAAAACTTTGATTCTCCAACTTTGTGATGTTTTAATTTTCAAAATTTTTGGAAATTCTGAATTTCCGAATTTCAAAAGTTCTGAAACCTTAGGAATTTGCGAATTCCTTAAAGTTGGAATTTCAGAAAATTCGAAACTTCAGAGTTTGTGAACATCAGAATTTTCGAATTTCTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGGTTTTTGAATTTTCGAAATCTCAATTTTTAGAATTTTTACGTTCTGAATCTCGGAAATCAAAATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGATCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTTCTATACAATATTAATAAATGGATTTTCAGCAATTTCAGAGTTTTCTGAACCACTTTTCGAATAACCACCAATTTTTTTTTGAATTTTGCCATTCCAAATTTTAAAAAGAATTTTTACCTCATTCCCTTCTCTCTCCTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAGTTCCATAGCATTATAATATTTTATTATATCCTTA</canonical>
            <polymorphic>AAGGGGGAGGACGACAGCTGTACGCAGATGTTCACCGTTACGGTAGAATGCATACCCTGGCTCCAAAAATCCTCCGAAAAATCTCCTGTCCCCCCCACCTTTAATTTCGGGATTTGTGGAATCTTTTTTTAAACATTTTAGGGGTTTCTGATTTTTTGAATTCCAAAATTTCAGAAATTTCGGATATTTGAAAAATGGAATTTCTAGATTCTCAATTTTCAAATTTCCCGAATGTCCCCAGATTACAAAACTTTGATTCTCCAACTTTGTGATGTTTTAATTTTCAAAATTTTTGGAAATTCTGAATTTCCGAATTTCAAAAGTTCTGAAACCTTAGGAATTTGCGAATTCCTTAAAGTTGGAATTTCAGAAAATTCGAAACTTCAGAGTTTGTGAACATCAGAATTTTCGAATTTCTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGGTTTTTGAATTTTCGAAATCTCAATTTTTAGAATTTTKACGTTCTGAATCTCGGAAATCAAAATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGATCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTTCTATACAATATTAATAAATGGATTTTCAGCAATTTCAGAGTTTTCTGAACCACTTTTCGAATAACCACCAATTTTTTTTTGAATTTTGCCATTCCAAATTTTAAAAAGAATTTTTACCTCATTCCCTTCTCTCTCCTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAGTTCCATAGCATTATAATATTTTATTATATCCTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTAATTTCGGGATTTGTG</pcr_primer_p1>
		<pcr_primer_p2>AAACTTCAAAATGTCATAAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>628</pcr_amplicon_size>
		<canonical_amplicon>CTTTAATTTCGGGATTTGTGGAATCTTTTTTTAAACATTTTAGGGGTTTCTGATTTTTTGAATTCCAAAATTTCAGAAATTTCGGATATTTGAAAAATGGAATTTCTAGATTCTCAATTTTCAAATTTCCCGAATGTCCCCAGATTACAAAACTTTGATTCTCCAACTTTGTGATGTTTTAATTTTCAAAATTTTTGGAAATTCTGAATTTCCGAATTTCAAAAGTTCTGAAACCTTAGGAATTTGCGAATTCCTTAAAGTTGGAATTTCAGAAAATTCGAAACTTCAGAGTTTGTGAACATCAGAATTTTCGAATTTCTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGGTTTTTGAATTTTCGAAATCTCAATTTTTAGAATTTTTACGTTCTGAATCTCGGAAATCAAAATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGATCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTAATTTCGGGATTTGTGGAATCTTTTTTTAAACATTTTAGGGGTTTCTGATTTTTTGAATTCCAAAATTTCAGAAATTTCGGATATTTGAAAAATGGAATTTCTAGATTCTCAATTTTCAAATTTCCCGAATGTCCCCAGATTACAAAACTTTGATTCTCCAACTTTGTGATGTTTTAATTTTCAAAATTTTTGGAAATTCTGAATTTCCGAATTTCAAAAGTTCTGAAACCTTAGGAATTTGCGAATTCCTTAAAGTTGGAATTTCAGAAAATTCGAAACTTCAGAGTTTGTGAACATCAGAATTTTCGAATTTCTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGGTTTTTGAATTTTCGAAATCTCAATTTTTAGAATTTTKACGTTCTGAATCTCGGAAATCAAAATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGATCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24119</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>125640</contig_pos>
        <strand></strand>
        <context>tcggaaatca[A/G]aattagagaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCGAAATCTCAATTTTTAGAATTTTTACGTTCTGAATCTCGGAAATCA</left_flank>
        <right_flank>AATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAGATGTTCACCGTTACGGTAGAATGCATACCCTGGCTCCAAAAATCCTCCGAAAAATCTCCTGTCCCCCCCACCTTTAATTTCGGGATTTGTGGAATCTTTTTTTAAACATTTTAGGGGTTTCTGATTTTTTGAATTCCAAAATTTCAGAAATTTCGGATATTTGAAAAATGGAATTTCTAGATTCTCAATTTTCAAATTTCCCGAATGTCCCCAGATTACAAAACTTTGATTCTCCAACTTTGTGATGTTTTAATTTTCAAAATTTTTGGAAATTCTGAATTTCCGAATTTCAAAAGTTCTGAAACCTTAGGAATTTGCGAATTCCTTAAAGTTGGAATTTCAGAAAATTCGAAACTTCAGAGTTTGTGAACATCAGAATTTTCGAATTTCTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGGTTTTTGAATTTTCGAAATCTCAATTTTTAGAATTTTTACGTTCTGAATCTCGGAAATCAAAATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGATCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTTCTATACAATATTAATAAATGGATTTTCAGCAATTTCAGAGTTTTCTGAACCACTTTTCGAATAACCACCAATTTTTTTTTGAATTTTGCCATTCCAAATTTTAAAAAGAATTTTTACCTCATTCCCTTCTCTCTCCTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAGTTCCATAGCATTATAATATTTTATTATATCCTTATCGTTGGATATAATCTTCGAGAA</canonical>
            <polymorphic>GCAGATGTTCACCGTTACGGTAGAATGCATACCCTGGCTCCAAAAATCCTCCGAAAAATCTCCTGTCCCCCCCACCTTTAATTTCGGGATTTGTGGAATCTTTTTTTAAACATTTTAGGGGTTTCTGATTTTTTGAATTCCAAAATTTCAGAAATTTCGGATATTTGAAAAATGGAATTTCTAGATTCTCAATTTTCAAATTTCCCGAATGTCCCCAGATTACAAAACTTTGATTCTCCAACTTTGTGATGTTTTAATTTTCAAAATTTTTGGAAATTCTGAATTTCCGAATTTCAAAAGTTCTGAAACCTTAGGAATTTGCGAATTCCTTAAAGTTGGAATTTCAGAAAATTCGAAACTTCAGAGTTTGTGAACATCAGAATTTTCGAATTTCTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGGTTTTTGAATTTTCGAAATCTCAATTTTTAGAATTTTTACGTTCTGAATCTCGGAAATCARAATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGATCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTTCTATACAATATTAATAAATGGATTTTCAGCAATTTCAGAGTTTTCTGAACCACTTTTCGAATAACCACCAATTTTTTTTTGAATTTTGCCATTCCAAATTTTAAAAAGAATTTTTACCTCATTCCCTTCTCTCTCCTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAGTTCCATAGCATTATAATATTTTATTATATCCTTATCGTTGGATATAATCTTCGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTAATTTCGGGATTTGTG</pcr_primer_p1>
		<pcr_primer_p2>AAACTTCAAAATGTCATAAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>628</pcr_amplicon_size>
		<canonical_amplicon>CTTTAATTTCGGGATTTGTGGAATCTTTTTTTAAACATTTTAGGGGTTTCTGATTTTTTGAATTCCAAAATTTCAGAAATTTCGGATATTTGAAAAATGGAATTTCTAGATTCTCAATTTTCAAATTTCCCGAATGTCCCCAGATTACAAAACTTTGATTCTCCAACTTTGTGATGTTTTAATTTTCAAAATTTTTGGAAATTCTGAATTTCCGAATTTCAAAAGTTCTGAAACCTTAGGAATTTGCGAATTCCTTAAAGTTGGAATTTCAGAAAATTCGAAACTTCAGAGTTTGTGAACATCAGAATTTTCGAATTTCTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGGTTTTTGAATTTTCGAAATCTCAATTTTTAGAATTTTTACGTTCTGAATCTCGGAAATCAAAATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGATCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTAATTTCGGGATTTGTGGAATCTTTTTTTAAACATTTTAGGGGTTTCTGATTTTTTGAATTCCAAAATTTCAGAAATTTCGGATATTTGAAAAATGGAATTTCTAGATTCTCAATTTTCAAATTTCCCGAATGTCCCCAGATTACAAAACTTTGATTCTCCAACTTTGTGATGTTTTAATTTTCAAAATTTTTGGAAATTCTGAATTTCCGAATTTCAAAAGTTCTGAAACCTTAGGAATTTGCGAATTCCTTAAAGTTGGAATTTCAGAAAATTCGAAACTTCAGAGTTTGTGAACATCAGAATTTTCGAATTTCTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGGTTTTTGAATTTTCGAAATCTCAATTTTTAGAATTTTTACGTTCTGAATCTCGGAAATCARAATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGATCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24120</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>125701</contig_pos>
        <strand></strand>
        <context>caaacttcga[T/C]cttctgaatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGA</left_flank>
        <right_flank>CTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAAT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTGTCCCCCCCACCTTTAATTTCGGGATTTGTGGAATCTTTTTTTAAACATTTTAGGGGTTTCTGATTTTTTGAATTCCAAAATTTCAGAAATTTCGGATATTTGAAAAATGGAATTTCTAGATTCTCAATTTTCAAATTTCCCGAATGTCCCCAGATTACAAAACTTTGATTCTCCAACTTTGTGATGTTTTAATTTTCAAAATTTTTGGAAATTCTGAATTTCCGAATTTCAAAAGTTCTGAAACCTTAGGAATTTGCGAATTCCTTAAAGTTGGAATTTCAGAAAATTCGAAACTTCAGAGTTTGTGAACATCAGAATTTTCGAATTTCTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGGTTTTTGAATTTTCGAAATCTCAATTTTTAGAATTTTTACGTTCTGAATCTCGGAAATCAAAATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGATCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTTCTATACAATATTAATAAATGGATTTTCAGCAATTTCAGAGTTTTCTGAACCACTTTTCGAATAACCACCAATTTTTTTTTGAATTTTGCCATTCCAAATTTTAAAAAGAATTTTTACCTCATTCCCTTCTCTCTCCTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAGTTCCATAGCATTATAATATTTTATTATATCCTTATCGTTGGATATAATCTTCGAGAACGTTTGATACGGCGGTTCTGGTGGTGGCACTCTTCTGATGACGTTGTGCTTGTCCATAAAG</canonical>
            <polymorphic>CCTGTCCCCCCCACCTTTAATTTCGGGATTTGTGGAATCTTTTTTTAAACATTTTAGGGGTTTCTGATTTTTTGAATTCCAAAATTTCAGAAATTTCGGATATTTGAAAAATGGAATTTCTAGATTCTCAATTTTCAAATTTCCCGAATGTCCCCAGATTACAAAACTTTGATTCTCCAACTTTGTGATGTTTTAATTTTCAAAATTTTTGGAAATTCTGAATTTCCGAATTTCAAAAGTTCTGAAACCTTAGGAATTTGCGAATTCCTTAAAGTTGGAATTTCAGAAAATTCGAAACTTCAGAGTTTGTGAACATCAGAATTTTCGAATTTCTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGGTTTTTGAATTTTCGAAATCTCAATTTTTAGAATTTTTACGTTCTGAATCTCGGAAATCAAAATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGAYCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTTCTATACAATATTAATAAATGGATTTTCAGCAATTTCAGAGTTTTCTGAACCACTTTTCGAATAACCACCAATTTTTTTTTGAATTTTGCCATTCCAAATTTTAAAAAGAATTTTTACCTCATTCCCTTCTCTCTCCTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAGTTCCATAGCATTATAATATTTTATTATATCCTTATCGTTGGATATAATCTTCGAGAACGTTTGATACGGCGGTTCTGGTGGTGGCACTCTTCTGATGACGTTGTGCTTGTCCATAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>497 444 59</canonical_bands>
                <polymorphic_bands>556 444</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTAATTTCGGGATTTGTG</pcr_primer_p1>
		<pcr_primer_p2>AAACTTCAAAATGTCATAAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>628</pcr_amplicon_size>
		<canonical_amplicon>CTTTAATTTCGGGATTTGTGGAATCTTTTTTTAAACATTTTAGGGGTTTCTGATTTTTTGAATTCCAAAATTTCAGAAATTTCGGATATTTGAAAAATGGAATTTCTAGATTCTCAATTTTCAAATTTCCCGAATGTCCCCAGATTACAAAACTTTGATTCTCCAACTTTGTGATGTTTTAATTTTCAAAATTTTTGGAAATTCTGAATTTCCGAATTTCAAAAGTTCTGAAACCTTAGGAATTTGCGAATTCCTTAAAGTTGGAATTTCAGAAAATTCGAAACTTCAGAGTTTGTGAACATCAGAATTTTCGAATTTCTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGGTTTTTGAATTTTCGAAATCTCAATTTTTAGAATTTTTACGTTCTGAATCTCGGAAATCAAAATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGATCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTAATTTCGGGATTTGTGGAATCTTTTTTTAAACATTTTAGGGGTTTCTGATTTTTTGAATTCCAAAATTTCAGAAATTTCGGATATTTGAAAAATGGAATTTCTAGATTCTCAATTTTCAAATTTCCCGAATGTCCCCAGATTACAAAACTTTGATTCTCCAACTTTGTGATGTTTTAATTTTCAAAATTTTTGGAAATTCTGAATTTCCGAATTTCAAAAGTTCTGAAACCTTAGGAATTTGCGAATTCCTTAAAGTTGGAATTTCAGAAAATTCGAAACTTCAGAGTTTGTGAACATCAGAATTTTCGAATTTCTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGGTTTTTGAATTTTCGAAATCTCAATTTTTAGAATTTTTACGTTCTGAATCTCGGAAATCAAAATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGAYCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24121</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>125787</contig_pos>
        <strand></strand>
        <context>tcagaattcg[C/T]cagttcaaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCG</left_flank>
        <right_flank>CAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGAAATTTCGGATATTTGAAAAATGGAATTTCTAGATTCTCAATTTTCAAATTTCCCGAATGTCCCCAGATTACAAAACTTTGATTCTCCAACTTTGTGATGTTTTAATTTTCAAAATTTTTGGAAATTCTGAATTTCCGAATTTCAAAAGTTCTGAAACCTTAGGAATTTGCGAATTCCTTAAAGTTGGAATTTCAGAAAATTCGAAACTTCAGAGTTTGTGAACATCAGAATTTTCGAATTTCTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGGTTTTTGAATTTTCGAAATCTCAATTTTTAGAATTTTTACGTTCTGAATCTCGGAAATCAAAATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGATCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTTCTATACAATATTAATAAATGGATTTTCAGCAATTTCAGAGTTTTCTGAACCACTTTTCGAATAACCACCAATTTTTTTTTGAATTTTGCCATTCCAAATTTTAAAAAGAATTTTTACCTCATTCCCTTCTCTCTCCTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAGTTCCATAGCATTATAATATTTTATTATATCCTTATCGTTGGATATAATCTTCGAGAACGTTTGATACGGCGGTTCTGGTGGTGGCACTCTTCTGATGACGTTGTGCTTGTCCATAAAGATTCCGGTGTCTCCGATTTTGATAATTCCCGGTGTCGTTTGGATATAGAATACTGGACAAACTCGCGCCAGCTTCTCTTGCCACGT</canonical>
            <polymorphic>TCAGAAATTTCGGATATTTGAAAAATGGAATTTCTAGATTCTCAATTTTCAAATTTCCCGAATGTCCCCAGATTACAAAACTTTGATTCTCCAACTTTGTGATGTTTTAATTTTCAAAATTTTTGGAAATTCTGAATTTCCGAATTTCAAAAGTTCTGAAACCTTAGGAATTTGCGAATTCCTTAAAGTTGGAATTTCAGAAAATTCGAAACTTCAGAGTTTGTGAACATCAGAATTTTCGAATTTCTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGGTTTTTGAATTTTCGAAATCTCAATTTTTAGAATTTTTACGTTCTGAATCTCGGAAATCAAAATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGATCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGYCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTTCTATACAATATTAATAAATGGATTTTCAGCAATTTCAGAGTTTTCTGAACCACTTTTCGAATAACCACCAATTTTTTTTTGAATTTTGCCATTCCAAATTTTAAAAAGAATTTTTACCTCATTCCCTTCTCTCTCCTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAGTTCCATAGCATTATAATATTTTATTATATCCTTATCGTTGGATATAATCTTCGAGAACGTTTGATACGGCGGTTCTGGTGGTGGCACTCTTCTGATGACGTTGTGCTTGTCCATAAAGATTCCGGTGTCTCCGATTTTGATAATTCCCGGTGTCGTTTGGATATAGAATACTGGACAAACTCGCGCCAGCTTCTCTTGCCACGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTAATTTCGGGATTTGTG</pcr_primer_p1>
		<pcr_primer_p2>AAACTTCAAAATGTCATAAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>628</pcr_amplicon_size>
		<canonical_amplicon>GCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>GYCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24122</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>125853</contig_pos>
        <strand>+</strand>
        <context>TCTATACAAT[A/G]TTAATAAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTTCTATACAAT</left_flank>
        <right_flank>TTAATAAATGGATTTTCAGCAATTTCAGAGTTTTCTGAACCACTTTTCGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCAGATTACAAAACTTTGATTCTCCAACTTTGTGATGTTTTAATTTTCAAAATTTTTGGAAATTCTGAATTTCCGAATTTCAAAAGTTCTGAAACCTTAGGAATTTGCGAATTCCTTAAAGTTGGAATTTCAGAAAATTCGAAACTTCAGAGTTTGTGAACATCAGAATTTTCGAATTTCTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGGTTTTTGAATTTTCGAAATCTCAATTTTTAGAATTTTTACGTTCTGAATCTCGGAAATCAAAATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGATCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTTCTATACAATATTAATAAATGGATTTTCAGCAATTTCAGAGTTTTCTGAACCACTTTTCGAATAACCACCAATTTTTTTTTGAATTTTGCCATTCCAAATTTTAAAAAGAATTTTTACCTCATTCCCTTCTCTCTCCTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAGTTCCATAGCATTATAATATTTTATTATATCCTTATCGTTGGATATAATCTTCGAGAACGTTTGATACGGCGGTTCTGGTGGTGGCACTCTTCTGATGACGTTGTGCTTGTCCATAAAGATTCCGGTGTCTCCGATTTTGATAATTCCCGGTGTCGTTTGGATATAGAATACTGGACAAACTCGCGCCAGCTTCTCTTGCCACGTTTCGACGTCTTCTTTTGGAGAAGGATCCGATGGGGTGGATTCTGAAGCATCCGGCTTGGCCACTTT</canonical>
            <polymorphic>CCCAGATTACAAAACTTTGATTCTCCAACTTTGTGATGTTTTAATTTTCAAAATTTTTGGAAATTCTGAATTTCCGAATTTCAAAAGTTCTGAAACCTTAGGAATTTGCGAATTCCTTAAAGTTGGAATTTCAGAAAATTCGAAACTTCAGAGTTTGTGAACATCAGAATTTTCGAATTTCTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGGTTTTTGAATTTTCGAAATCTCAATTTTTAGAATTTTTACGTTCTGAATCTCGGAAATCAAAATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGATCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTTCTATACAATRTTAATAAATGGATTTTCAGCAATTTCAGAGTTTTCTGAACCACTTTTCGAATAACCACCAATTTTTTTTTGAATTTTGCCATTCCAAATTTTAAAAAGAATTTTTACCTCATTCCCTTCTCTCTCCTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAGTTCCATAGCATTATAATATTTTATTATATCCTTATCGTTGGATATAATCTTCGAGAACGTTTGATACGGCGGTTCTGGTGGTGGCACTCTTCTGATGACGTTGTGCTTGTCCATAAAGATTCCGGTGTCTCCGATTTTGATAATTCCCGGTGTCGTTTGGATATAGAATACTGGACAAACTCGCGCCAGCTTCTCTTGCCACGTTTCGACGTCTTCTTTTGGAGAAGGATCCGATGGGGTGGATTCTGAAGCATCCGGCTTGGCCACTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>314 253 248 185</canonical_bands>
                <polymorphic_bands>433 314 253</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTAAACATTTTAGGGGTTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTATTCGAAAAGTGGTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>664</pcr_amplicon_size>
		<canonical_amplicon>TATTAATAAATGGATTTTCAGCAATTTCAGAGTTTTCTGAACCACTTTTCGAATAA</canonical_amplicon>
		<polymorphic_amplicon>TRTTAATAAATGGATTTTCAGCAATTTCAGAGTTTTCTGAACCACTTTTCGAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24123</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>125915</contig_pos>
        <strand>+</strand>
        <context>TAACCACCAA[A/C]TTTTTTTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTTCAGCAATTTCAGAGTTTTCTGAACCACTTTTCGAATAACCACCAA</left_flank>
        <right_flank>TTTTTTTTGAATTTTGCCATTCCAAATTTTAAAAAGAATTTTTACCTCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCTGAATTTCCGAATTTCAAAAGTTCTGAAACCTTAGGAATTTGCGAATTCCTTAAAGTTGGAATTTCAGAAAATTCGAAACTTCAGAGTTTGTGAACATCAGAATTTTCGAATTTCTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGGTTTTTGAATTTTCGAAATCTCAATTTTTAGAATTTTTACGTTCTGAATCTCGGAAATCAAAATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGATCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTTCTATACAATATTAATAAATGGATTTTCAGCAATTTCAGAGTTTTCTGAACCACTTTTCGAATAACCACCAATTTTTTTTTGAATTTTGCCATTCCAAATTTTAAAAAGAATTTTTACCTCATTCCCTTCTCTCTCCTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAGTTCCATAGCATTATAATATTTTATTATATCCTTATCGTTGGATATAATCTTCGAGAACGTTTGATACGGCGGTTCTGGTGGTGGCACTCTTCTGATGACGTTGTGCTTGTCCATAAAGATTCCGGTGTCTCCGATTTTGATAATTCCCGGTGTCGTTTGGATATAGAATACTGGACAAACTCGCGCCAGCTTCTCTTGCCACGTTTCGACGTCTTCTTTTGGAGAAGGATCCGATGGGGTGGATTCTGAAGCATCCGGCTTGGCCACTTTCTCTTGGCCGGATTCTGAAGCAACCGGCTCCAGTCGTGTCGATCGCCTCTGCGTCGGCTCCT</canonical>
            <polymorphic>ATTCTGAATTTCCGAATTTCAAAAGTTCTGAAACCTTAGGAATTTGCGAATTCCTTAAAGTTGGAATTTCAGAAAATTCGAAACTTCAGAGTTTGTGAACATCAGAATTTTCGAATTTCTGGAATTCGGAGTTTTCAAAGTTCTGAAATTTTCAAATTTAATGGGTTTTTGAATTTTCGAAATCTCAATTTTTAGAATTTTTACGTTCTGAATCTCGGAAATCAAAATTAGAGAAATTCGAAAATTCGGAATATTCAGGTATCTCGGAACTTTTTCAAACTTCGATCTTCTGAATTTCTTAATTTTGAAACTTTGGAATTTTCAAAACTTCCAAATTTTTGGGATCCTAAATTTTCAAAGTTCAGAATTCGCCAGTTCAAAAAGCTCAGGATTTCCGAATATCACATTTTTATGACATTTTGAAGTTTCTATACAATATTAATAAATGGATTTTCAGCAATTTCAGAGTTTTCTGAACCACTTTTCGAATAACCACCAAMTTTTTTTTGAATTTTGCCATTCCAAATTTTAAAAAGAATTTTTACCTCATTCCCTTCTCTCTCCTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAGTTCCATAGCATTATAATATTTTATTATATCCTTATCGTTGGATATAATCTTCGAGAACGTTTGATACGGCGGTTCTGGTGGTGGCACTCTTCTGATGACGTTGTGCTTGTCCATAAAGATTCCGGTGTCTCCGATTTTGATAATTCCCGGTGTCGTTTGGATATAGAATACTGGACAAACTCGCGCCAGCTTCTCTTGCCACGTTTCGACGTCTTCTTTTGGAGAAGGATCCGATGGGGTGGATTCTGAAGCATCCGGCTTGGCCACTTTCTCTTGGCCGGATTCTGAAGCAACCGGCTCCAGTCGTGTCGATCGCCTCTGCGTCGGCTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>191 177 93 70 50 39 31 30 26 26 24 17 17 16 16 16 16 15 15 12 12 10 9 9 9 8 8 8 8 8 8 6</canonical_bands>
                <polymorphic_bands>191 177 93 70 51 50 31 30 26 26 24 17 17 16 16 16 16 15 15 12 10 9 9 9 8 8 8 8 8 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTTCAGCAATTTCAGAGTT</pcr_primer_p1>
		<pcr_primer_p2>AAAATATTATAATGCTATGGAACTGA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GATTTTCAGCAATTTCAGAGTTTTCTGAACCACTTTTCGAATAACCACCAATTTTTTTTTGAATTTTGCCATTCCAAATTTTAAAAAGAATTTTTACCTCATTCCCTTCTCTCTCCTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAGTTCCATAGCATTATAATATTTT</canonical_amplicon>
		<polymorphic_amplicon>GATTTTCAGCAATTTCAGAGTTTTCTGAACCACTTTTCGAATAACCACCAAMTTTTTTTTGAATTTTGCCATTCCAAATTTTAAAAAGAATTTTTACCTCATTCCCTTCTCTCTCCTTCTGAATCGTCTCCTTAGACTTGTTTCTCAAAATCATCTCGAATTTCGCTCCATCCTTCACAAACGAAATTCCATCATCCCATTCAAACGAAAAGGGCTTCAGTTCCATAGCATTATAATATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24124</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>166542</contig_pos>
        <strand>+</strand>
        <context>GATCTACGGA[G/T]CCAGCTCGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTAGTTTAGAGAAAAACACAATTCTTTAGATTTCGTATCAGATCTACGGA</left_flank>
        <right_flank>CCAGCTCGGGACACACGATCAATATGCTGAACAATTTCGGAGCAACGTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGAAAAATTTGTGGCATGACCTTGAAAAAACTAAATCATTTTTTCCCAATTTTTTTTTCAGTGTTGCTCACGGAGCCCTGGTCGAGGATCGTCATACTGTAGACACTTATGGTGCCGTCTATACTGATCCGATTGCTCTTTTCGGGATGACTCTGGAAGCCTATGCCAACTTTTTGATCAATTATTGCGAAGAGAATCGATTGGCCGAGGCGGAGGAGTATATGGATGAGGTGATGAAGGTGAGTAGTGGACATCTGGACATTTGGGGGGACGGATTTTTCCTTTTTGAAAAATTTTGAATTTCAAAGTTTCAAAAAATCCATAAACTCAAAAATCTAGAATTTCAAAAATTCCTTGAAATTCTGATATTTTGAAAATTCCAAAAATTCAATTTTCCAAAAAAAAACAATTTTTTTAGAAAATCAAGTTTTTCAAATTTTCAAACTTCTTAGTTTAGAGAAAAACACAATTCTTTAGATTTCGTATCAGATCTACGGAGCCAGCTCGGGACACACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCAAAATTCGAGAAAAATACGAGATTTCTTTTCTAAATTTTTATCTAAATTTTCAGATTCGAATTGGCGAAAAAGTACCTATCAATTGGTGTGGATCGTATTCTCTATGTGAATGAATGTGCTCATATGCTGCCTGGATATTACTGTAACTACGCGGAAGCTCTTTTCCATACAGGGCAAAAGGTGAGCAATCGTTGCTCAGCGATTTGAAAAAAAACAGAGATTTTTGGGATCAAAAA</canonical>
            <polymorphic>GTGAAAAATTTGTGGCATGACCTTGAAAAAACTAAATCATTTTTTCCCAATTTTTTTTTCAGTGTTGCTCACGGAGCCCTGGTCGAGGATCGTCATACTGTAGACACTTATGGTGCCGTCTATACTGATCCGATTGCTCTTTTCGGGATGACTCTGGAAGCCTATGCCAACTTTTTGATCAATTATTGCGAAGAGAATCGATTGGCCGAGGCGGAGGAGTATATGGATGAGGTGATGAAGGTGAGTAGTGGACATCTGGACATTTGGGGGGACGGATTTTTCCTTTTTGAAAAATTTTGAATTTCAAAGTTTCAAAAAATCCATAAACTCAAAAATCTAGAATTTCAAAAATTCCTTGAAATTCTGATATTTTGAAAATTCCAAAAATTCAATTTTCCAAAAAAAAACAATTTTTTTAGAAAATCAAGTTTTTCAAATTTTCAAACTTCTTAGTTTAGAGAAAAACACAATTCTTTAGATTTCGTATCAGATCTACGGAKCCAGCTCGGGACACACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCAAAATTCGAGAAAAATACGAGATTTCTTTTCTAAATTTTTATCTAAATTTTCAGATTCGAATTGGCGAAAAAGTACCTATCAATTGGTGTGGATCGTATTCTCTATGTGAATGAATGTGCTCATATGCTGCCTGGATATTACTGTAACTACGCGGAAGCTCTTTTCCATACAGGGCAAAAGGTGAGCAATCGTTGCTCAGCGATTTGAAAAAAAACAGAGATTTTTGGGATCAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>295 161 141 84 79 76 63 52 45 4</canonical_bands>
                <polymorphic_bands>299 161 141 84 79 76 63 52 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCTTGAAATTCTGATATTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAATCTGAAAATCAGTACCTTACC</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TTCCTTGAAATTCTGATATTTTGAAAATTCCAAAAATTCAATTTTCCAAAAAAAAACAATTTTTTTAGAAAATCAAGTTTTTCAAATTTTCAAACTTCTTAGTTTAGAGAAAAACACAATTCTTTAGATTTCGTATCAGATCTACGGAGCCAGCTCGGGACACACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTT</canonical_amplicon>
		<polymorphic_amplicon>TTCCTTGAAATTCTGATATTTTGAAAATTCCAAAAATTCAATTTTCCAAAAAAAAACAATTTTTTTAGAAAATCAAGTTTTTCAAATTTTCAAACTTCTTAGTTTAGAGAAAAACACAATTCTTTAGATTTCGTATCAGATCTACGGAKCCAGCTCGGGACACACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24125</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>166633</contig_pos>
        <strand>+</strand>
        <context>CAGATTTGTC[G/T]AAATCTGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTC</left_flank>
        <right_flank>AAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCATACTGTAGACACTTATGGTGCCGTCTATACTGATCCGATTGCTCTTTTCGGGATGACTCTGGAAGCCTATGCCAACTTTTTGATCAATTATTGCGAAGAGAATCGATTGGCCGAGGCGGAGGAGTATATGGATGAGGTGATGAAGGTGAGTAGTGGACATCTGGACATTTGGGGGGACGGATTTTTCCTTTTTGAAAAATTTTGAATTTCAAAGTTTCAAAAAATCCATAAACTCAAAAATCTAGAATTTCAAAAATTCCTTGAAATTCTGATATTTTGAAAATTCCAAAAATTCAATTTTCCAAAAAAAAACAATTTTTTTAGAAAATCAAGTTTTTCAAATTTTCAAACTTCTTAGTTTAGAGAAAAACACAATTCTTTAGATTTCGTATCAGATCTACGGAGCCAGCTCGGGACACACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCAAAATTCGAGAAAAATACGAGATTTCTTTTCTAAATTTTTATCTAAATTTTCAGATTCGAATTGGCGAAAAAGTACCTATCAATTGGTGTGGATCGTATTCTCTATGTGAATGAATGTGCTCATATGCTGCCTGGATATTACTGTAACTACGCGGAAGCTCTTTTCCATACAGGGCAAAAGGTGAGCAATCGTTGCTCAGCGATTTGAAAAAAAACAGAGATTTTTGGGATCAAAAATTCCATTTTTAGGCCAAAAATGATTTCAATTTTGACTGTTCTAGCATTAAAAATACCGGAAAACTTGAAAAAAAAATTCAAATGTTTTTTT</canonical>
            <polymorphic>GTCATACTGTAGACACTTATGGTGCCGTCTATACTGATCCGATTGCTCTTTTCGGGATGACTCTGGAAGCCTATGCCAACTTTTTGATCAATTATTGCGAAGAGAATCGATTGGCCGAGGCGGAGGAGTATATGGATGAGGTGATGAAGGTGAGTAGTGGACATCTGGACATTTGGGGGGACGGATTTTTCCTTTTTGAAAAATTTTGAATTTCAAAGTTTCAAAAAATCCATAAACTCAAAAATCTAGAATTTCAAAAATTCCTTGAAATTCTGATATTTTGAAAATTCCAAAAATTCAATTTTCCAAAAAAAAACAATTTTTTTAGAAAATCAAGTTTTTCAAATTTTCAAACTTCTTAGTTTAGAGAAAAACACAATTCTTTAGATTTCGTATCAGATCTACGGAGCCAGCTCGGGACACACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCKAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCAAAATTCGAGAAAAATACGAGATTTCTTTTCTAAATTTTTATCTAAATTTTCAGATTCGAATTGGCGAAAAAGTACCTATCAATTGGTGTGGATCGTATTCTCTATGTGAATGAATGTGCTCATATGCTGCCTGGATATTACTGTAACTACGCGGAAGCTCTTTTCCATACAGGGCAAAAGGTGAGCAATCGTTGCTCAGCGATTTGAAAAAAAACAGAGATTTTTGGGATCAAAAATTCCATTTTTAGGCCAAAAATGATTTCAATTTTGACTGTTCTAGCATTAAAAATACCGGAAAACTTGAAAAAAAAATTCAAATGTTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>391 270 134 108 51 46</canonical_bands>
                <polymorphic_bands>525 270 108 51 46</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGATCAATATGCTGAACAAT</pcr_primer_p1>
		<pcr_primer_p2>TGAGCCAAAAATCACTAGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCA</canonical_amplicon>
		<polymorphic_amplicon>ACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCKAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24126</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>166647</contig_pos>
        <strand>+</strand>
        <context>TCTGAAAAAA[C/T]Kattttgaac</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAA</left_flank>
        <right_flank>GATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTATGGTGCCGTCTATACTGATCCGATTGCTCTTTTCGGGATGACTCTGGAAGCCTATGCCAACTTTTTGATCAATTATTGCGAAGAGAATCGATTGGCCGAGGCGGAGGAGTATATGGATGAGGTGATGAAGGTGAGTAGTGGACATCTGGACATTTGGGGGGACGGATTTTTCCTTTTTGAAAAATTTTGAATTTCAAAGTTTCAAAAAATCCATAAACTCAAAAATCTAGAATTTCAAAAATTCCTTGAAATTCTGATATTTTGAAAATTCCAAAAATTCAATTTTCCAAAAAAAAACAATTTTTTTAGAAAATCAAGTTTTTCAAATTTTCAAACTTCTTAGTTTAGAGAAAAACACAATTCTTTAGATTTCGTATCAGATCTACGGAGCCAGCTCGGGACACACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCAAAATTCGAGAAAAATACGAGATTTCTTTTCTAAATTTTTATCTAAATTTTCAGATTCGAATTGGCGAAAAAGTACCTATCAATTGGTGTGGATCGTATTCTCTATGTGAATGAATGTGCTCATATGCTGCCTGGATATTACTGTAACTACGCGGAAGCTCTTTTCCATACAGGGCAAAAGGTGAGCAATCGTTGCTCAGCGATTTGAAAAAAAACAGAGATTTTTGGGATCAAAAATTCCATTTTTAGGCCAAAAATGATTTCAATTTTGACTGTTCTAGCATTAAAAATACCGGAAAACTTGAAAAAAAAATTCAAATGTTTTTTTCGAAAATTTTCGAT</canonical>
            <polymorphic>ACTTATGGTGCCGTCTATACTGATCCGATTGCTCTTTTCGGGATGACTCTGGAAGCCTATGCCAACTTTTTGATCAATTATTGCGAAGAGAATCGATTGGCCGAGGCGGAGGAGTATATGGATGAGGTGATGAAGGTGAGTAGTGGACATCTGGACATTTGGGGGGACGGATTTTTCCTTTTTGAAAAATTTTGAATTTCAAAGTTTCAAAAAATCCATAAACTCAAAAATCTAGAATTTCAAAAATTCCTTGAAATTCTGATATTTTGAAAATTCCAAAAATTCAATTTTCCAAAAAAAAACAATTTTTTTAGAAAATCAAGTTTTTCAAATTTTCAAACTTCTTAGTTTAGAGAAAAACACAATTCTTTAGATTTCGTATCAGATCTACGGAGCCAGCTCGGGACACACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAAYGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCAAAATTCGAGAAAAATACGAGATTTCTTTTCTAAATTTTTATCTAAATTTTCAGATTCGAATTGGCGAAAAAGTACCTATCAATTGGTGTGGATCGTATTCTCTATGTGAATGAATGTGCTCATATGCTGCCTGGATATTACTGTAACTACGCGGAAGCTCTTTTCCATACAGGGCAAAAGGTGAGCAATCGTTGCTCAGCGATTTGAAAAAAAACAGAGATTTTTGGGATCAAAAATTCCATTTTTAGGCCAAAAATGATTTCAATTTTGACTGTTCTAGCATTAAAAATACCGGAAAACTTGAAAAAAAAATTCAAATGTTTTTTTCGAAAATTTTCGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGATCAATATGCTGAACAAT</pcr_primer_p1>
		<pcr_primer_p2>TGAGCCAAAAATCACTAGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCA</canonical_amplicon>
		<polymorphic_amplicon>ACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAAYGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24127</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>166648</contig_pos>
        <strand>+</strand>
        <context>CTGAAAAAAY[G/T]attttgaacc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAAT</left_flank>
        <right_flank>ATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTATGGTGCCGTCTATACTGATCCGATTGCTCTTTTCGGGATGACTCTGGAAGCCTATGCCAACTTTTTGATCAATTATTGCGAAGAGAATCGATTGGCCGAGGCGGAGGAGTATATGGATGAGGTGATGAAGGTGAGTAGTGGACATCTGGACATTTGGGGGGACGGATTTTTCCTTTTTGAAAAATTTTGAATTTCAAAGTTTCAAAAAATCCATAAACTCAAAAATCTAGAATTTCAAAAATTCCTTGAAATTCTGATATTTTGAAAATTCCAAAAATTCAATTTTCCAAAAAAAAACAATTTTTTTAGAAAATCAAGTTTTTCAAATTTTCAAACTTCTTAGTTTAGAGAAAAACACAATTCTTTAGATTTCGTATCAGATCTACGGAGCCAGCTCGGGACACACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCAAAATTCGAGAAAAATACGAGATTTCTTTTCTAAATTTTTATCTAAATTTTCAGATTCGAATTGGCGAAAAAGTACCTATCAATTGGTGTGGATCGTATTCTCTATGTGAATGAATGTGCTCATATGCTGCCTGGATATTACTGTAACTACGCGGAAGCTCTTTTCCATACAGGGCAAAAGGTGAGCAATCGTTGCTCAGCGATTTGAAAAAAAACAGAGATTTTTGGGATCAAAAATTCCATTTTTAGGCCAAAAATGATTTCAATTTTGACTGTTCTAGCATTAAAAATACCGGAAAACTTGAAAAAAAAATTCAAATGTTTTTTTCGAAAATTTTCGATT</canonical>
            <polymorphic>CTTATGGTGCCGTCTATACTGATCCGATTGCTCTTTTCGGGATGACTCTGGAAGCCTATGCCAACTTTTTGATCAATTATTGCGAAGAGAATCGATTGGCCGAGGCGGAGGAGTATATGGATGAGGTGATGAAGGTGAGTAGTGGACATCTGGACATTTGGGGGGACGGATTTTTCCTTTTTGAAAAATTTTGAATTTCAAAGTTTCAAAAAATCCATAAACTCAAAAATCTAGAATTTCAAAAATTCCTTGAAATTCTGATATTTTGAAAATTCCAAAAATTCAATTTTCCAAAAAAAAACAATTTTTTTAGAAAATCAAGTTTTTCAAATTTTCAAACTTCTTAGTTTAGAGAAAAACACAATTCTTTAGATTTCGTATCAGATCTACGGAGCCAGCTCGGGACACACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATKATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCAAAATTCGAGAAAAATACGAGATTTCTTTTCTAAATTTTTATCTAAATTTTCAGATTCGAATTGGCGAAAAAGTACCTATCAATTGGTGTGGATCGTATTCTCTATGTGAATGAATGTGCTCATATGCTGCCTGGATATTACTGTAACTACGCGGAAGCTCTTTTCCATACAGGGCAAAAGGTGAGCAATCGTTGCTCAGCGATTTGAAAAAAAACAGAGATTTTTGGGATCAAAAATTCCATTTTTAGGCCAAAAATGATTTCAATTTTGACTGTTCTAGCATTAAAAATACCGGAAAACTTGAAAAAAAAATTCAAATGTTTTTTTCGAAAATTTTCGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGATCAATATGCTGAACAAT</pcr_primer_p1>
		<pcr_primer_p2>TGAGCCAAAAATCACTAGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCA</canonical_amplicon>
		<polymorphic_amplicon>ACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATKATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24128</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>166659</contig_pos>
        <strand></strand>
        <context>attttgaacc[A/G]ttttgaccct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACC</left_flank>
        <right_flank>TTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTATACTGATCCGATTGCTCTTTTCGGGATGACTCTGGAAGCCTATGCCAACTTTTTGATCAATTATTGCGAAGAGAATCGATTGGCCGAGGCGGAGGAGTATATGGATGAGGTGATGAAGGTGAGTAGTGGACATCTGGACATTTGGGGGGACGGATTTTTCCTTTTTGAAAAATTTTGAATTTCAAAGTTTCAAAAAATCCATAAACTCAAAAATCTAGAATTTCAAAAATTCCTTGAAATTCTGATATTTTGAAAATTCCAAAAATTCAATTTTCCAAAAAAAAACAATTTTTTTAGAAAATCAAGTTTTTCAAATTTTCAAACTTCTTAGTTTAGAGAAAAACACAATTCTTTAGATTTCGTATCAGATCTACGGAGCCAGCTCGGGACACACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCAAAATTCGAGAAAAATACGAGATTTCTTTTCTAAATTTTTATCTAAATTTTCAGATTCGAATTGGCGAAAAAGTACCTATCAATTGGTGTGGATCGTATTCTCTATGTGAATGAATGTGCTCATATGCTGCCTGGATATTACTGTAACTACGCGGAAGCTCTTTTCCATACAGGGCAAAAGGTGAGCAATCGTTGCTCAGCGATTTGAAAAAAAACAGAGATTTTTGGGATCAAAAATTCCATTTTTAGGCCAAAAATGATTTCAATTTTGACTGTTCTAGCATTAAAAATACCGGAAAACTTGAAAAAAAAATTCAAATGTTTTTTTCGAAAATTTTCGATTTTTTCTGAAAT</canonical>
            <polymorphic>GTCTATACTGATCCGATTGCTCTTTTCGGGATGACTCTGGAAGCCTATGCCAACTTTTTGATCAATTATTGCGAAGAGAATCGATTGGCCGAGGCGGAGGAGTATATGGATGAGGTGATGAAGGTGAGTAGTGGACATCTGGACATTTGGGGGGACGGATTTTTCCTTTTTGAAAAATTTTGAATTTCAAAGTTTCAAAAAATCCATAAACTCAAAAATCTAGAATTTCAAAAATTCCTTGAAATTCTGATATTTTGAAAATTCCAAAAATTCAATTTTCCAAAAAAAAACAATTTTTTTAGAAAATCAAGTTTTTCAAATTTTCAAACTTCTTAGTTTAGAGAAAAACACAATTCTTTAGATTTCGTATCAGATCTACGGAGCCAGCTCGGGACACACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCRTTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCAAAATTCGAGAAAAATACGAGATTTCTTTTCTAAATTTTTATCTAAATTTTCAGATTCGAATTGGCGAAAAAGTACCTATCAATTGGTGTGGATCGTATTCTCTATGTGAATGAATGTGCTCATATGCTGCCTGGATATTACTGTAACTACGCGGAAGCTCTTTTCCATACAGGGCAAAAGGTGAGCAATCGTTGCTCAGCGATTTGAAAAAAAACAGAGATTTTTGGGATCAAAAATTCCATTTTTAGGCCAAAAATGATTTCAATTTTGACTGTTCTAGCATTAAAAATACCGGAAAACTTGAAAAAAAAATTCAAATGTTTTTTTCGAAAATTTTCGATTTTTTCTGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGATCAATATGCTGAACAAT</pcr_primer_p1>
		<pcr_primer_p2>TGAGCCAAAAATCACTAGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCA</canonical_amplicon>
		<polymorphic_amplicon>ACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCRTTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24129</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>166697</contig_pos>
        <strand></strand>
        <context>gcccttttct[G/C]gyctatttta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCT</left_flank>
        <right_flank>GTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAAGCCTATGCCAACTTTTTGATCAATTATTGCGAAGAGAATCGATTGGCCGAGGCGGAGGAGTATATGGATGAGGTGATGAAGGTGAGTAGTGGACATCTGGACATTTGGGGGGACGGATTTTTCCTTTTTGAAAAATTTTGAATTTCAAAGTTTCAAAAAATCCATAAACTCAAAAATCTAGAATTTCAAAAATTCCTTGAAATTCTGATATTTTGAAAATTCCAAAAATTCAATTTTCCAAAAAAAAACAATTTTTTTAGAAAATCAAGTTTTTCAAATTTTCAAACTTCTTAGTTTAGAGAAAAACACAATTCTTTAGATTTCGTATCAGATCTACGGAGCCAGCTCGGGACACACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCAAAATTCGAGAAAAATACGAGATTTCTTTTCTAAATTTTTATCTAAATTTTCAGATTCGAATTGGCGAAAAAGTACCTATCAATTGGTGTGGATCGTATTCTCTATGTGAATGAATGTGCTCATATGCTGCCTGGATATTACTGTAACTACGCGGAAGCTCTTTTCCATACAGGGCAAAAGGTGAGCAATCGTTGCTCAGCGATTTGAAAAAAAACAGAGATTTTTGGGATCAAAAATTCCATTTTTAGGCCAAAAATGATTTCAATTTTGACTGTTCTAGCATTAAAAATACCGGAAAACTTGAAAAAAAAATTCAAATGTTTTTTTCGAAAATTTTCGATTTTTTCTGAAATTTTGAAAAAATTATGAAATTTCAAATTTCTCGAATTTC</canonical>
            <polymorphic>GGAAGCCTATGCCAACTTTTTGATCAATTATTGCGAAGAGAATCGATTGGCCGAGGCGGAGGAGTATATGGATGAGGTGATGAAGGTGAGTAGTGGACATCTGGACATTTGGGGGGACGGATTTTTCCTTTTTGAAAAATTTTGAATTTCAAAGTTTCAAAAAATCCATAAACTCAAAAATCTAGAATTTCAAAAATTCCTTGAAATTCTGATATTTTGAAAATTCCAAAAATTCAATTTTCCAAAAAAAAACAATTTTTTTAGAAAATCAAGTTTTTCAAATTTTCAAACTTCTTAGTTTAGAGAAAAACACAATTCTTTAGATTTCGTATCAGATCTACGGAGCCAGCTCGGGACACACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTSGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCAAAATTCGAGAAAAATACGAGATTTCTTTTCTAAATTTTTATCTAAATTTTCAGATTCGAATTGGCGAAAAAGTACCTATCAATTGGTGTGGATCGTATTCTCTATGTGAATGAATGTGCTCATATGCTGCCTGGATATTACTGTAACTACGCGGAAGCTCTTTTCCATACAGGGCAAAAGGTGAGCAATCGTTGCTCAGCGATTTGAAAAAAAACAGAGATTTTTGGGATCAAAAATTCCATTTTTAGGCCAAAAATGATTTCAATTTTGACTGTTCTAGCATTAAAAATACCGGAAAACTTGAAAAAAAAATTCAAATGTTTTTTTCGAAAATTTTCGATTTTTTCTGAAATTTTGAAAAAATTATGAAATTTCAAATTTCTCGAATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>475 357 146 22</canonical_bands>
                <polymorphic_bands>475 379 146</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGATCAATATGCTGAACAAT</pcr_primer_p1>
		<pcr_primer_p2>TGAGCCAAAAATCACTAGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCA</canonical_amplicon>
		<polymorphic_amplicon>ACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTSGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24130</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>166699</contig_pos>
        <strand></strand>
        <context>ccttttctsg[T/C]ctattttaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGG</left_flank>
        <right_flank>CTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCCTATGCCAACTTTTTGATCAATTATTGCGAAGAGAATCGATTGGCCGAGGCGGAGGAGTATATGGATGAGGTGATGAAGGTGAGTAGTGGACATCTGGACATTTGGGGGGACGGATTTTTCCTTTTTGAAAAATTTTGAATTTCAAAGTTTCAAAAAATCCATAAACTCAAAAATCTAGAATTTCAAAAATTCCTTGAAATTCTGATATTTTGAAAATTCCAAAAATTCAATTTTCCAAAAAAAAACAATTTTTTTAGAAAATCAAGTTTTTCAAATTTTCAAACTTCTTAGTTTAGAGAAAAACACAATTCTTTAGATTTCGTATCAGATCTACGGAGCCAGCTCGGGACACACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCAAAATTCGAGAAAAATACGAGATTTCTTTTCTAAATTTTTATCTAAATTTTCAGATTCGAATTGGCGAAAAAGTACCTATCAATTGGTGTGGATCGTATTCTCTATGTGAATGAATGTGCTCATATGCTGCCTGGATATTACTGTAACTACGCGGAAGCTCTTTTCCATACAGGGCAAAAGGTGAGCAATCGTTGCTCAGCGATTTGAAAAAAAACAGAGATTTTTGGGATCAAAAATTCCATTTTTAGGCCAAAAATGATTTCAATTTTGACTGTTCTAGCATTAAAAATACCGGAAAACTTGAAAAAAAAATTCAAATGTTTTTTTCGAAAATTTTCGATTTTTTCTGAAATTTTGAAAAAATTATGAAATTTCAAATTTCTCGAATTTCCC</canonical>
            <polymorphic>AAGCCTATGCCAACTTTTTGATCAATTATTGCGAAGAGAATCGATTGGCCGAGGCGGAGGAGTATATGGATGAGGTGATGAAGGTGAGTAGTGGACATCTGGACATTTGGGGGGACGGATTTTTCCTTTTTGAAAAATTTTGAATTTCAAAGTTTCAAAAAATCCATAAACTCAAAAATCTAGAATTTCAAAAATTCCTTGAAATTCTGATATTTTGAAAATTCCAAAAATTCAATTTTCCAAAAAAAAACAATTTTTTTAGAAAATCAAGTTTTTCAAATTTTCAAACTTCTTAGTTTAGAGAAAAACACAATTCTTTAGATTTCGTATCAGATCTACGGAGCCAGCTCGGGACACACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGYCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCAAAATTCGAGAAAAATACGAGATTTCTTTTCTAAATTTTTATCTAAATTTTCAGATTCGAATTGGCGAAAAAGTACCTATCAATTGGTGTGGATCGTATTCTCTATGTGAATGAATGTGCTCATATGCTGCCTGGATATTACTGTAACTACGCGGAAGCTCTTTTCCATACAGGGCAAAAGGTGAGCAATCGTTGCTCAGCGATTTGAAAAAAAACAGAGATTTTTGGGATCAAAAATTCCATTTTTAGGCCAAAAATGATTTCAATTTTGACTGTTCTAGCATTAAAAATACCGGAAAACTTGAAAAAAAAATTCAAATGTTTTTTTCGAAAATTTTCGATTTTTTCTGAAATTTTGAAAAAATTATGAAATTTCAAATTTCTCGAATTTCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGATCAATATGCTGAACAAT</pcr_primer_p1>
		<pcr_primer_p2>TGAGCCAAAAATCACTAGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCA</canonical_amplicon>
		<polymorphic_amplicon>ACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGYCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24131</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>166753</contig_pos>
        <strand></strand>
        <context>aatttcggcc[C/G]ATTTGAAWAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCC</left_flank>
        <right_flank>ATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGC</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGAGGAGTATATGGATGAGGTGATGAAGGTGAGTAGTGGACATCTGGACATTTGGGGGGACGGATTTTTCCTTTTTGAAAAATTTTGAATTTCAAAGTTTCAAAAAATCCATAAACTCAAAAATCTAGAATTTCAAAAATTCCTTGAAATTCTGATATTTTGAAAATTCCAAAAATTCAATTTTCCAAAAAAAAACAATTTTTTTAGAAAATCAAGTTTTTCAAATTTTCAAACTTCTTAGTTTAGAGAAAAACACAATTCTTTAGATTTCGTATCAGATCTACGGAGCCAGCTCGGGACACACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCAAAATTCGAGAAAAATACGAGATTTCTTTTCTAAATTTTTATCTAAATTTTCAGATTCGAATTGGCGAAAAAGTACCTATCAATTGGTGTGGATCGTATTCTCTATGTGAATGAATGTGCTCATATGCTGCCTGGATATTACTGTAACTACGCGGAAGCTCTTTTCCATACAGGGCAAAAGGTGAGCAATCGTTGCTCAGCGATTTGAAAAAAAACAGAGATTTTTGGGATCAAAAATTCCATTTTTAGGCCAAAAATGATTTCAATTTTGACTGTTCTAGCATTAAAAATACCGGAAAACTTGAAAAAAAAATTCAAATGTTTTTTTCGAAAATTTTCGATTTTTTCTGAAATTTTGAAAAAATTATGAAATTTCAAATTTCTCGAATTTCCCGCCAAAACTTTTCCAAAAAAATTTTCTAGGAAGAAGCAGCGGAATACGCTCGAA</canonical>
            <polymorphic>CGGAGGAGTATATGGATGAGGTGATGAAGGTGAGTAGTGGACATCTGGACATTTGGGGGGACGGATTTTTCCTTTTTGAAAAATTTTGAATTTCAAAGTTTCAAAAAATCCATAAACTCAAAAATCTAGAATTTCAAAAATTCCTTGAAATTCTGATATTTTGAAAATTCCAAAAATTCAATTTTCCAAAAAAAAACAATTTTTTTAGAAAATCAAGTTTTTCAAATTTTCAAACTTCTTAGTTTAGAGAAAAACACAATTCTTTAGATTTCGTATCAGATCTACGGAGCCAGCTCGGGACACACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCSATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCAAAATTCGAGAAAAATACGAGATTTCTTTTCTAAATTTTTATCTAAATTTTCAGATTCGAATTGGCGAAAAAGTACCTATCAATTGGTGTGGATCGTATTCTCTATGTGAATGAATGTGCTCATATGCTGCCTGGATATTACTGTAACTACGCGGAAGCTCTTTTCCATACAGGGCAAAAGGTGAGCAATCGTTGCTCAGCGATTTGAAAAAAAACAGAGATTTTTGGGATCAAAAATTCCATTTTTAGGCCAAAAATGATTTCAATTTTGACTGTTCTAGCATTAAAAATACCGGAAAACTTGAAAAAAAAATTCAAATGTTTTTTTCGAAAATTTTCGATTTTTTCTGAAATTTTGAAAAAATTATGAAATTTCAAATTTCTCGAATTTCCCGCCAAAACTTTTCCAAAAAAATTTTCTAGGAAGAAGCAGCGGAATACGCTCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>504 422 74</canonical_bands>
                <polymorphic_bands>578 422</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGATCAATATGCTGAACAAT</pcr_primer_p1>
		<pcr_primer_p2>TGAGCCAAAAATCACTAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCA</canonical_amplicon>
		<polymorphic_amplicon>ACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCSATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24132</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>166761</contig_pos>
        <strand>+</strand>
        <context>ccsATTTGAA[A/T]AATTCGAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAA</left_flank>
        <right_flank>AATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCAAAATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATATGGATGAGGTGATGAAGGTGAGTAGTGGACATCTGGACATTTGGGGGGACGGATTTTTCCTTTTTGAAAAATTTTGAATTTCAAAGTTTCAAAAAATCCATAAACTCAAAAATCTAGAATTTCAAAAATTCCTTGAAATTCTGATATTTTGAAAATTCCAAAAATTCAATTTTCCAAAAAAAAACAATTTTTTTAGAAAATCAAGTTTTTCAAATTTTCAAACTTCTTAGTTTAGAGAAAAACACAATTCTTTAGATTTCGTATCAGATCTACGGAGCCAGCTCGGGACACACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCAAAATTCGAGAAAAATACGAGATTTCTTTTCTAAATTTTTATCTAAATTTTCAGATTCGAATTGGCGAAAAAGTACCTATCAATTGGTGTGGATCGTATTCTCTATGTGAATGAATGTGCTCATATGCTGCCTGGATATTACTGTAACTACGCGGAAGCTCTTTTCCATACAGGGCAAAAGGTGAGCAATCGTTGCTCAGCGATTTGAAAAAAAACAGAGATTTTTGGGATCAAAAATTCCATTTTTAGGCCAAAAATGATTTCAATTTTGACTGTTCTAGCATTAAAAATACCGGAAAACTTGAAAAAAAAATTCAAATGTTTTTTTCGAAAATTTTCGATTTTTTCTGAAATTTTGAAAAAATTATGAAATTTCAAATTTCTCGAATTTCCCGCCAAAACTTTTCCAAAAAAATTTTCTAGGAAGAAGCAGCGGAATACGCTCGAAAAGCGGTC</canonical>
            <polymorphic>TATATGGATGAGGTGATGAAGGTGAGTAGTGGACATCTGGACATTTGGGGGGACGGATTTTTCCTTTTTGAAAAATTTTGAATTTCAAAGTTTCAAAAAATCCATAAACTCAAAAATCTAGAATTTCAAAAATTCCTTGAAATTCTGATATTTTGAAAATTCCAAAAATTCAATTTTCCAAAAAAAAACAATTTTTTTAGAAAATCAAGTTTTTCAAATTTTCAAACTTCTTAGTTTAGAGAAAAACACAATTCTTTAGATTTCGTATCAGATCTACGGAGCCAGCTCGGGACACACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAWAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCAAAATTCGAGAAAAATACGAGATTTCTTTTCTAAATTTTTATCTAAATTTTCAGATTCGAATTGGCGAAAAAGTACCTATCAATTGGTGTGGATCGTATTCTCTATGTGAATGAATGTGCTCATATGCTGCCTGGATATTACTGTAACTACGCGGAAGCTCTTTTCCATACAGGGCAAAAGGTGAGCAATCGTTGCTCAGCGATTTGAAAAAAAACAGAGATTTTTGGGATCAAAAATTCCATTTTTAGGCCAAAAATGATTTCAATTTTGACTGTTCTAGCATTAAAAATACCGGAAAACTTGAAAAAAAAATTCAAATGTTTTTTTCGAAAATTTTCGATTTTTTCTGAAATTTTGAAAAAATTATGAAATTTCAAATTTCTCGAATTTCCCGCCAAAACTTTTCCAAAAAAATTTTCTAGGAAGAAGCAGCGGAATACGCTCGAAAAGCGGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>284 190 76 73 50 46 43 41 31 27 21 19 19 17 12 10 9 9 9 7 7</canonical_bands>
                <polymorphic_bands>330 190 76 73 50 43 41 31 27 21 19 19 17 12 10 9 9 9 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCGGTAAGGTACTGATTTTCA</pcr_primer_p1>
		<pcr_primer_p2>AATCTCGTATTTTTCTCGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>ATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCAAAATTCGAGAAAAATACGAGATT</canonical_amplicon>
		<polymorphic_amplicon>ATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAWAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCAAAATTCGAGAAAAATACGAGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24133</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>166838</contig_pos>
        <strand>+</strand>
        <context>TTTCTTTTCT[A/T]AATTTTTATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTAGTGATTTTTGGCTCAAAATTCGAGAAAAATACGAGATTTCTTTTCT</left_flank>
        <right_flank>AATTTTTATCTAAATTTTCAGATTCGAATTGGCGAAAAAGTACCTATCAA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAATTTCAAAGTTTCAAAAAATCCATAAACTCAAAAATCTAGAATTTCAAAAATTCCTTGAAATTCTGATATTTTGAAAATTCCAAAAATTCAATTTTCCAAAAAAAAACAATTTTTTTAGAAAATCAAGTTTTTCAAATTTTCAAACTTCTTAGTTTAGAGAAAAACACAATTCTTTAGATTTCGTATCAGATCTACGGAGCCAGCTCGGGACACACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCAAAATTCGAGAAAAATACGAGATTTCTTTTCTAAATTTTTATCTAAATTTTCAGATTCGAATTGGCGAAAAAGTACCTATCAATTGGTGTGGATCGTATTCTCTATGTGAATGAATGTGCTCATATGCTGCCTGGATATTACTGTAACTACGCGGAAGCTCTTTTCCATACAGGGCAAAAGGTGAGCAATCGTTGCTCAGCGATTTGAAAAAAAACAGAGATTTTTGGGATCAAAAATTCCATTTTTAGGCCAAAAATGATTTCAATTTTGACTGTTCTAGCATTAAAAATACCGGAAAACTTGAAAAAAAAATTCAAATGTTTTTTTCGAAAATTTTCGATTTTTTCTGAAATTTTGAAAAAATTATGAAATTTCAAATTTCTCGAATTTCCCGCCAAAACTTTTCCAAAAAAATTTTCTAGGAAGAAGCAGCGGAATACGCTCGAAAAGCGGTCCAAATGTCGCGAAGCGGTGATGAGCGTCTTCGAAAATACACTCAACAATTTTTGAAGGATCTCGAGAAGGATTTGAA</canonical>
            <polymorphic>TTGAATTTCAAAGTTTCAAAAAATCCATAAACTCAAAAATCTAGAATTTCAAAAATTCCTTGAAATTCTGATATTTTGAAAATTCCAAAAATTCAATTTTCCAAAAAAAAACAATTTTTTTAGAAAATCAAGTTTTTCAAATTTTCAAACTTCTTAGTTTAGAGAAAAACACAATTCTTTAGATTTCGTATCAGATCTACGGAGCCAGCTCGGGACACACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCAAAATTCGAGAAAAATACGAGATTTCTTTTCTWAATTTTTATCTAAATTTTCAGATTCGAATTGGCGAAAAAGTACCTATCAATTGGTGTGGATCGTATTCTCTATGTGAATGAATGTGCTCATATGCTGCCTGGATATTACTGTAACTACGCGGAAGCTCTTTTCCATACAGGGCAAAAGGTGAGCAATCGTTGCTCAGCGATTTGAAAAAAAACAGAGATTTTTGGGATCAAAAATTCCATTTTTAGGCCAAAAATGATTTCAATTTTGACTGTTCTAGCATTAAAAATACCGGAAAACTTGAAAAAAAAATTCAAATGTTTTTTTCGAAAATTTTCGATTTTTTCTGAAATTTTGAAAAAATTATGAAATTTCAAATTTCTCGAATTTCCCGCCAAAACTTTTCCAAAAAAATTTTCTAGGAAGAAGCAGCGGAATACGCTCGAAAAGCGGTCCAAATGTCGCGAAGCGGTGATGAGCGTCTTCGAAAATACACTCAACAATTTTTGAAGGATCTCGAGAAGGATTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>284 190 120 76 50 46 41 31 27 21 19 19 17 12 10 9 9 9 7 3</canonical_bands>
                <polymorphic_bands>284 190 120 76 50 46 43 41 27 21 19 19 17 10 9 9 9 7 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGTACTGATTTTCAGATTTGTC</pcr_primer_p1>
		<pcr_primer_p2>CACCAATTGATAGGTACTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>286</pcr_amplicon_size>
		<canonical_amplicon>AAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCAAAATTCGAGAAAAATACGAGATTTCTTTTCTAAATTTTTATCTAAATTTTCAGATTCGAATTGGCGAAAAAGTACCTATCAATTGGTG</canonical_amplicon>
		<polymorphic_amplicon>AAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCAAAATTCGAGAAAAATACGAGATTTCTTTTCTWAATTTTTATCTAAATTTTCAGATTCGAATTGGCGAAAAAGTACCTATCAATTGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24134</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>166853</contig_pos>
        <strand>+</strand>
        <context>TTTATCTAAA[A/T]TTTCAGATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCAAAATTCGAGAAAAATACGAGATTTCTTTTCTAAATTTTTATCTAAA</left_flank>
        <right_flank>TTTCAGATTCGAATTGGCGAAAAAGTACCTATCAATTGGTGTGGATCGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAAAAATCCATAAACTCAAAAATCTAGAATTTCAAAAATTCCTTGAAATTCTGATATTTTGAAAATTCCAAAAATTCAATTTTCCAAAAAAAAACAATTTTTTTAGAAAATCAAGTTTTTCAAATTTTCAAACTTCTTAGTTTAGAGAAAAACACAATTCTTTAGATTTCGTATCAGATCTACGGAGCCAGCTCGGGACACACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCAAAATTCGAGAAAAATACGAGATTTCTTTTCTAAATTTTTATCTAAATTTTCAGATTCGAATTGGCGAAAAAGTACCTATCAATTGGTGTGGATCGTATTCTCTATGTGAATGAATGTGCTCATATGCTGCCTGGATATTACTGTAACTACGCGGAAGCTCTTTTCCATACAGGGCAAAAGGTGAGCAATCGTTGCTCAGCGATTTGAAAAAAAACAGAGATTTTTGGGATCAAAAATTCCATTTTTAGGCCAAAAATGATTTCAATTTTGACTGTTCTAGCATTAAAAATACCGGAAAACTTGAAAAAAAAATTCAAATGTTTTTTTCGAAAATTTTCGATTTTTTCTGAAATTTTGAAAAAATTATGAAATTTCAAATTTCTCGAATTTCCCGCCAAAACTTTTCCAAAAAAATTTTCTAGGAAGAAGCAGCGGAATACGCTCGAAAAGCGGTCCAAATGTCGCGAAGCGGTGATGAGCGTCTTCGAAAATACACTCAACAATTTTTGAAGGATCTCGAGAAGGATTTGAATAAGGGAAAACCCAA</canonical>
            <polymorphic>TCAAAAAATCCATAAACTCAAAAATCTAGAATTTCAAAAATTCCTTGAAATTCTGATATTTTGAAAATTCCAAAAATTCAATTTTCCAAAAAAAAACAATTTTTTTAGAAAATCAAGTTTTTCAAATTTTCAAACTTCTTAGTTTAGAGAAAAACACAATTCTTTAGATTTCGTATCAGATCTACGGAGCCAGCTCGGGACACACGATCAATATGCTGAACAATTTCGGAGCAACGTTGGTGCTCAAAAATCGGTAAGGTACTGATTTTCAGATTTGTCGAAATCTGAAAAAATGATTTTGAACCATTTTGACCCTTATTGGGACCATTTTAAGCCCTTTTCTGGTCTATTTTAAATCATTTTAAGCGGGGTTTTTGCTATTTTAGACCAATTTCGGCCCATTTGAAAAATTCGAAATTGAAAAAAATATTATTTCTAGTGATTTTTGGCTCAAAATTCGAGAAAAATACGAGATTTCTTTTCTAAATTTTTATCTAAAWTTTCAGATTCGAATTGGCGAAAAAGTACCTATCAATTGGTGTGGATCGTATTCTCTATGTGAATGAATGTGCTCATATGCTGCCTGGATATTACTGTAACTACGCGGAAGCTCTTTTCCATACAGGGCAAAAGGTGAGCAATCGTTGCTCAGCGATTTGAAAAAAAACAGAGATTTTTGGGATCAAAAATTCCATTTTTAGGCCAAAAATGATTTCAATTTTGACTGTTCTAGCATTAAAAATACCGGAAAACTTGAAAAAAAAATTCAAATGTTTTTTTCGAAAATTTTCGATTTTTTCTGAAATTTTGAAAAAATTATGAAATTTCAAATTTCTCGAATTTCCCGCCAAAACTTTTCCAAAAAAATTTTCTAGGAAGAAGCAGCGGAATACGCTCGAAAAGCGGTCCAAATGTCGCGAAGCGGTGATGAGCGTCTTCGAAAATACACTCAACAATTTTTGAAGGATCTCGAGAAGGATTTGAATAAGGGAAAACCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>284 190 135 76 50 46 31 29 27 21 19 19 17 12 10 9 9 9 7</canonical_bands>
                <polymorphic_bands>284 202 135 76 50 46 31 29 27 21 19 19 17 10 9 9 9 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>168 154 89 64 47 46 39 33 31 29 29 27 27 22 21 19 19 18 17 14 12 11 10 9 9 9 8 7 7 5</canonical_bands>
                <polymorphic_bands>168 154 89 64 47 46 39 33 31 29 29 27 27 26 22 21 19 19 18 17 11 10 9 9 9 8 7 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTCAAAATTCGAGAAAAATAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGATCCCAAAAATCTCT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GCTCAAAATTCGAGAAAAATACGAGATTTCTTTTCTAAATTTTTATCTAAATTTTCAGATTCGAATTGGCGAAAAAGTACCTATCAATTGGTGTGGATCGTATTCTCTATGTGAATGAATGTGCTCATATGCTGCCTGGATATTACTGTAACTACGCGGAAGCTCTTTTCCATACAGGGCAAAAGGTGAGCAATCGTTGCTCAGCGATTTGAAAAAAAACAGAGATTTTTGGGATCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GCTCAAAATTCGAGAAAAATACGAGATTTCTTTTCTAAATTTTTATCTAAAWTTTCAGATTCGAATTGGCGAAAAAGTACCTATCAATTGGTGTGGATCGTATTCTCTATGTGAATGAATGTGCTCATATGCTGCCTGGATATTACTGTAACTACGCGGAAGCTCTTTTCCATACAGGGCAAAAGGTGAGCAATCGTTGCTCAGCGATTTGAAAAAAAACAGAGATTTTTGGGATCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24135</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>202082</contig_pos>
        <strand></strand>
        <context>tttgaaatcc[C/G]gccaaaaatg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGTCCGTTTCTGGGAACTCCTAGAAGATTCTAGAAGCTTTTTTGAAATCC</left_flank>
        <right_flank>GCCAAAAATGAAAACTACGAAAAATTAGCGTTTTTTCCGAATTTTCGAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGCCAGCAAGTCTACATGCCCGGATTTTCGGCTGGAACAAAGAGCAATTTGCTGATTTGGCCCTATCCAGCGCCACGGCCAACGCTGGATTTGTGTTGGAAGTGAGTTTTGAGCTCTGAAATACTGAAAATGGCTTCTGAAACTCTAGAAGATTCTGGAATTGCTCATTCTTGGGTTTTTTGGAGTTTTTACCTCAAAAATGCCGATTTTTGGCATGAAAATTAGGTTTCTAGATGGGGTTTTGTCGAATTCTGGAAGCTCAATTTTGAAGTTTTGAGCTTTTAAATTCTCGAAATGGCTTCTGAAACTCTCTAGAAGATTCTGGAATTCTCACATTGCTCATTCTTAAAAAGAGGGCTTCGACCAACATTGTTTATCATTTTAATACATCAAAATGTGTAGATTCATATAGCACAAATTGCAAAAATTAAAAAAATCGGTCCAAAAAGTCCGTTTCTGGGAACTCCTAGAAGATTCTAGAAGCTTTTTTGAAATCCCGCCAAAAATGAAAACTACGAAAAATTAGCGTTTTTTCCGAATTTTCGAGAGAAAAGTTAATTTTTTCTTGGAATTTTTGCAAATCTTTTAAACCTTTTTAGGTTTTTGAGCTATTTTTGAAAATGCTTTTTCGATTTTTTCGGTATTTTTCGTCTGAAATTTGATGGAACGGTGTCCGGCGAAGATTACTGTAGGCTACTGTAGACAGCTAATCTCCTTTTTGTAATTTTGTGCAAACGCAGTCACGTCAAAATGCAGACAAAAAAAACTAAAAGAAAAATTCGTTTTCTACAGTAATCTACAGTAATCTTCCATGCCAAGAACACCATTTAGTCGAATTTCAGGCAGAAATTCGGGATAATCGAAAAAGAATCATTGAAAATAGCTGAAAACCCTAAAAGGGTCTAAAAATTTTGCGAAAAATCGGAGAAAAAATCAATTCTTCTCTCGAAAAATCACTAATTTTTCGTAGTTTTCAGTTTCGGCGGGAATTCAAAAAG</canonical>
            <polymorphic>GATGCCAGCAAGTCTACATGCCCGGATTTTCGGCTGGAACAAAGAGCAATTTGCTGATTTGGCCCTATCCAGCGCCACGGCCAACGCTGGATTTGTGTTGGAAGTGAGTTTTGAGCTCTGAAATACTGAAAATGGCTTCTGAAACTCTAGAAGATTCTGGAATTGCTCATTCTTGGGTTTTTTGGAGTTTTTACCTCAAAAATGCCGATTTTTGGCATGAAAATTAGGTTTCTAGATGGGGTTTTGTCGAATTCTGGAAGCTCAATTTTGAAGTTTTGAGCTTTTAAATTCTCGAAATGGCTTCTGAAACTCTCTAGAAGATTCTGGAATTCTCACATTGCTCATTCTTAAAAAGAGGGCTTCGACCAACATTGTTTATCATTTTAATACATCAAAATGTGTAGATTCATATAGCACAAATTGCAAAAATTAAAAAAATCGGTCCAAAAAGTCCGTTTCTGGGAACTCCTAGAAGATTCTAGAAGCTTTTTTGAAATCCSGCCAAAAATGAAAACTACGAAAAATTAGCGTTTTTTCCGAATTTTCGAGAGAAAAGTTAATTTTTTCTTGGAATTTTTGCAAATCTTTTAAACCTTTTTAGGTTTTTGAGCTATTTTTGAAAATGCTTTTTCGATTTTTTCGGTATTTTTCGTCTGAAATTTGATGGAACGGTGTCCGGCGAAGATTACTGTAGGCTACTGTAGACAGCTAATCTCCTTTTTGTAATTTTGTGCAAACGCAGTCACGTCAAAATGCAGACAAAAAAAACTAAAAGAAAAATTCGTTTTCTACAGTAATCTACAGTAATCTTCCATGCCAAGAACACCATTTAGTCGAATTTCAGGCAGAAATTCGGGATAATCGAAAAAGAATCATTGAAAATAGCTGAAAACCCTAAAAGGGTCTAAAAATTTTGCGAAAAATCGGAGAAAAAATCAATTCTTCTCTCGAAAAATCACTAATTTTTCGTAGTTTTCAGTTTCGGCGGGAATTCAAAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>499 485 16</canonical_bands>
                <polymorphic_bands>984 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATCAAAATGTGTAGATTCATATAGC</pcr_primer_p1>
		<pcr_primer_p2>TTTTAGGTGTTTCAGCTATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>734</pcr_amplicon_size>
		<canonical_amplicon>CATCAAAATGTGTAGATTCATATAGCACAAATTGCAAAAATTAAAAAAATCGGTCCAAAAAGTCCGTTTCTGGGAACTCCTAGAAGATTCTAGAAGCTTTTTTGAAATCCCGCCAAAAATGAAAACTACGAAA</canonical_amplicon>
		<polymorphic_amplicon>CATCAAAATGTGTAGATTCATATAGCACAAATTGCAAAAATTAAAAAAATCGGTCCAAAAAGTCCGTTTCTGGGAACTCCTAGAAGATTCTAGAAGCTTTTTTGAAATCCSGCCAAAAATGAAAACTACGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24136</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>202242</contig_pos>
        <strand></strand>
        <context>tcgtctgaaa[T/A]ttgatggaac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GCTATTTTTGAAAATGCTTTTTCGATTTTTTCGGTATTTTTCGTCTGAAA</left_flank>
        <right_flank>TTGATGGAACGGTGTCCGGCGAAGATTACTGTAGGCTACTGTAGACAGCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGCTCATTCTTGGGTTTTTTGGAGTTTTTACCTCAAAAATGCCGATTTTTGGCATGAAAATTAGGTTTCTAGATGGGGTTTTGTCGAATTCTGGAAGCTCAATTTTGAAGTTTTGAGCTTTTAAATTCTCGAAATGGCTTCTGAAACTCTCTAGAAGATTCTGGAATTCTCACATTGCTCATTCTTAAAAAGAGGGCTTCGACCAACATTGTTTATCATTTTAATACATCAAAATGTGTAGATTCATATAGCACAAATTGCAAAAATTAAAAAAATCGGTCCAAAAAGTCCGTTTCTGGGAACTCCTAGAAGATTCTAGAAGCTTTTTTGAAATCCCGCCAAAAATGAAAACTACGAAAAATTAGCGTTTTTTCCGAATTTTCGAGAGAAAAGTTAATTTTTTCTTGGAATTTTTGCAAATCTTTTAAACCTTTTTAGGTTTTTGAGCTATTTTTGAAAATGCTTTTTCGATTTTTTCGGTATTTTTCGTCTGAAATTTGATGGAACGGTGTCCGGCGAAGATTACTGTAGGCTACTGTAGACAGCTAATCTCCTTTTTGTAATTTTGTGCAAACGCAGTCACGTCAAAATGCAGACAAAAAAAACTAAAAGAAAAATTCGTTTTCTACAGTAATCTACAGTAATCTTCCATGCCAAGAACACCATTTAGTCGAATTTCAGGCAGAAATTCGGGATAATCGAAAAAGAATCATTGAAAATAGCTGAAAACCCTAAAAGGGTCTAAAAATTTTGCGAAAAATCGGAGAAAAAATCAATTCTTCTCTCGAAAAATCACTAATTTTTCGTAGTTTTCAGTTTCGGCGGGAATTCAAAAAGAGATACCAGAACCTTCTAGAAGTTTCTAGAAGCGTTTTAAACTTATTTTTCGAGGTTTTTCAAATTTATCTTGACAAAAAAACTCAAAAAAGAATCCTCAAAAAATAGCTGAAACACCTAAAAAATTGTTCGAAATCATCTTCTTCGATGACATAATTTC</canonical>
            <polymorphic>AATTGCTCATTCTTGGGTTTTTTGGAGTTTTTACCTCAAAAATGCCGATTTTTGGCATGAAAATTAGGTTTCTAGATGGGGTTTTGTCGAATTCTGGAAGCTCAATTTTGAAGTTTTGAGCTTTTAAATTCTCGAAATGGCTTCTGAAACTCTCTAGAAGATTCTGGAATTCTCACATTGCTCATTCTTAAAAAGAGGGCTTCGACCAACATTGTTTATCATTTTAATACATCAAAATGTGTAGATTCATATAGCACAAATTGCAAAAATTAAAAAAATCGGTCCAAAAAGTCCGTTTCTGGGAACTCCTAGAAGATTCTAGAAGCTTTTTTGAAATCCCGCCAAAAATGAAAACTACGAAAAATTAGCGTTTTTTCCGAATTTTCGAGAGAAAAGTTAATTTTTTCTTGGAATTTTTGCAAATCTTTTAAACCTTTTTAGGTTTTTGAGCTATTTTTGAAAATGCTTTTTCGATTTTTTCGGTATTTTTCGTCTGAAAWTTGATGGAACGGTGTCCGGCGAAGATTACTGTAGGCTACTGTAGACAGCTAATCTCCTTTTTGTAATTTTGTGCAAACGCAGTCACGTCAAAATGCAGACAAAAAAAACTAAAAGAAAAATTCGTTTTCTACAGTAATCTACAGTAATCTTCCATGCCAAGAACACCATTTAGTCGAATTTCAGGCAGAAATTCGGGATAATCGAAAAAGAATCATTGAAAATAGCTGAAAACCCTAAAAGGGTCTAAAAATTTTGCGAAAAATCGGAGAAAAAATCAATTCTTCTCTCGAAAAATCACTAATTTTTCGTAGTTTTCAGTTTCGGCGGGAATTCAAAAAGAGATACCAGAACCTTCTAGAAGTTTCTAGAAGCGTTTTAAACTTATTTTTCGAGGTTTTTCAAATTTATCTTGACAAAAAAACTCAAAAAAGAATCCTCAAAAAATAGCTGAAACACCTAAAAAATTGTTCGAAATCATCTTCTTCGATGACATAATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>212 121 98 89 86 80 73 60 58 41 37 32 13</canonical_bands>
                <polymorphic_bands>212 207 98 89 80 73 60 58 41 37 32 13</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>95 91 86 73 67 61 61 60 58 54 41 31 29 28 28 23 23 19 17 14 13 13 9 6 0</canonical_bands>
                <polymorphic_bands>153 95 91 73 61 61 60 58 54 41 31 29 28 28 23 23 19 17 14 13 13 9 6 0</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATCAAAATGTGTAGATTCATATAGC</pcr_primer_p1>
		<pcr_primer_p2>TTTTAGGTGTTTCAGCTATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>734</pcr_amplicon_size>
		<canonical_amplicon>CATCAAAATGTGTAGATTCATATAGCACAAATTGCAAAAATTAAAAAAATCGGTCCAAAAAGTCCGTTTCTGGGAACTCCTAGAAGATTCTAGAAGCTTTTTTGAAATCCCGCCAAAAATGAAAACTACGAAAAATTAGCGTTTTTTCCGAATTTTCGAGAGAAAAGTTAATTTTTTCTTGGAATTTTTGCAAATCTTTTAAACCTTTTTAGGTTTTTGAGCTATTTTTGAAAATGCTTTTTCGATTTTTTCGGTATTTTTCGTCTGAAATTTGATGGAACGGTGTCCGGCGAAGATTACTGTAGGCTACTGTAGACAGCTAATCTCCTTTTTGTAATTTTGTGCAAACGCAGTCACGTCAAAATGCAGACAAAAAAAACTAAAAGAAAAATTCGTTTTCTACAGTAATCTACAGTAATCTTCCATGCCAAGAACACCATTTAGTCGAATTTCAGGCAGAAATTCGGGATAATCGAAAAAGAATCATTGAAAATAGCTGAAAACCCTAAAAGGGTCTAAAAATTTTGCGAAAAATCGGAGAAAAAATCAATTCTTCTCTCGAAAAATCACTAATTTTTCGTAGTTTTCAGTTTCGGCGGGAATTCAAAAAGAGATACCAGAACCTTCTAGAAGTTTCTAGAAGCGTTTTAAACTTATTTTTCGAGGTTTTTCAAATTTATCTTGACAAAAAAACTCAAAAAAGAATCCTCAAAAAATAGCTGAAACACCTAAAA</canonical_amplicon>
		<polymorphic_amplicon>CATCAAAATGTGTAGATTCATATAGCACAAATTGCAAAAATTAAAAAAATCGGTCCAAAAAGTCCGTTTCTGGGAACTCCTAGAAGATTCTAGAAGCTTTTTTGAAATCCCGCCAAAAATGAAAACTACGAAAAATTAGCGTTTTTTCCGAATTTTCGAGAGAAAAGTTAATTTTTTCTTGGAATTTTTGCAAATCTTTTAAACCTTTTTAGGTTTTTGAGCTATTTTTGAAAATGCTTTTTCGATTTTTTCGGTATTTTTCGTCTGAAAWTTGATGGAACGGTGTCCGGCGAAGATTACTGTAGGCTACTGTAGACAGCTAATCTCCTTTTTGTAATTTTGTGCAAACGCAGTCACGTCAAAATGCAGACAAAAAAAACTAAAAGAAAAATTCGTTTTCTACAGTAATCTACAGTAATCTTCCATGCCAAGAACACCATTTAGTCGAATTTCAGGCAGAAATTCGGGATAATCGAAAAAGAATCATTGAAAATAGCTGAAAACCCTAAAAGGGTCTAAAAATTTTGCGAAAAATCGGAGAAAAAATCAATTCTTCTCTCGAAAAATCACTAATTTTTCGTAGTTTTCAGTTTCGGCGGGAATTCAAAAAGAGATACCAGAACCTTCTAGAAGTTTCTAGAAGCGTTTTAAACTTATTTTTCGAGGTTTTTCAAATTTATCTTGACAAAAAAACTCAAAAAAGAATCCTCAAAAAATAGCTGAAACACCTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24137</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>202283</contig_pos>
        <strand></strand>
        <context>gtaggctact[G/T]tagacagcta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGTCTGAAATTTGATGGAACGGTGTCCGGCGAAGATTACTGTAGGCTACT</left_flank>
        <right_flank>TAGACAGCTAATCTCCTTTTTGTAATTTTGTGCAAACGCAGTCACGTCAA</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGCCGATTTTTGGCATGAAAATTAGGTTTCTAGATGGGGTTTTGTCGAATTCTGGAAGCTCAATTTTGAAGTTTTGAGCTTTTAAATTCTCGAAATGGCTTCTGAAACTCTCTAGAAGATTCTGGAATTCTCACATTGCTCATTCTTAAAAAGAGGGCTTCGACCAACATTGTTTATCATTTTAATACATCAAAATGTGTAGATTCATATAGCACAAATTGCAAAAATTAAAAAAATCGGTCCAAAAAGTCCGTTTCTGGGAACTCCTAGAAGATTCTAGAAGCTTTTTTGAAATCCCGCCAAAAATGAAAACTACGAAAAATTAGCGTTTTTTCCGAATTTTCGAGAGAAAAGTTAATTTTTTCTTGGAATTTTTGCAAATCTTTTAAACCTTTTTAGGTTTTTGAGCTATTTTTGAAAATGCTTTTTCGATTTTTTCGGTATTTTTCGTCTGAAATTTGATGGAACGGTGTCCGGCGAAGATTACTGTAGGCTACTGTAGACAGCTAATCTCCTTTTTGTAATTTTGTGCAAACGCAGTCACGTCAAAATGCAGACAAAAAAAACTAAAAGAAAAATTCGTTTTCTACAGTAATCTACAGTAATCTTCCATGCCAAGAACACCATTTAGTCGAATTTCAGGCAGAAATTCGGGATAATCGAAAAAGAATCATTGAAAATAGCTGAAAACCCTAAAAGGGTCTAAAAATTTTGCGAAAAATCGGAGAAAAAATCAATTCTTCTCTCGAAAAATCACTAATTTTTCGTAGTTTTCAGTTTCGGCGGGAATTCAAAAAGAGATACCAGAACCTTCTAGAAGTTTCTAGAAGCGTTTTAAACTTATTTTTCGAGGTTTTTCAAATTTATCTTGACAAAAAAACTCAAAAAAGAATCCTCAAAAAATAGCTGAAACACCTAAAAAATTGTTCGAAATCATCTTCTTCGATGACATAATTTCATTTTTTATTCTAAAATATTTGAGAAATTGGACAAAAAATG</canonical>
            <polymorphic>ATGCCGATTTTTGGCATGAAAATTAGGTTTCTAGATGGGGTTTTGTCGAATTCTGGAAGCTCAATTTTGAAGTTTTGAGCTTTTAAATTCTCGAAATGGCTTCTGAAACTCTCTAGAAGATTCTGGAATTCTCACATTGCTCATTCTTAAAAAGAGGGCTTCGACCAACATTGTTTATCATTTTAATACATCAAAATGTGTAGATTCATATAGCACAAATTGCAAAAATTAAAAAAATCGGTCCAAAAAGTCCGTTTCTGGGAACTCCTAGAAGATTCTAGAAGCTTTTTTGAAATCCCGCCAAAAATGAAAACTACGAAAAATTAGCGTTTTTTCCGAATTTTCGAGAGAAAAGTTAATTTTTTCTTGGAATTTTTGCAAATCTTTTAAACCTTTTTAGGTTTTTGAGCTATTTTTGAAAATGCTTTTTCGATTTTTTCGGTATTTTTCGTCTGAAATTTGATGGAACGGTGTCCGGCGAAGATTACTGTAGGCTACTKTAGACAGCTAATCTCCTTTTTGTAATTTTGTGCAAACGCAGTCACGTCAAAATGCAGACAAAAAAAACTAAAAGAAAAATTCGTTTTCTACAGTAATCTACAGTAATCTTCCATGCCAAGAACACCATTTAGTCGAATTTCAGGCAGAAATTCGGGATAATCGAAAAAGAATCATTGAAAATAGCTGAAAACCCTAAAAGGGTCTAAAAATTTTGCGAAAAATCGGAGAAAAAATCAATTCTTCTCTCGAAAAATCACTAATTTTTCGTAGTTTTCAGTTTCGGCGGGAATTCAAAAAGAGATACCAGAACCTTCTAGAAGTTTCTAGAAGCGTTTTAAACTTATTTTTCGAGGTTTTTCAAATTTATCTTGACAAAAAAACTCAAAAAAGAATCCTCAAAAAATAGCTGAAACACCTAAAAAATTGTTCGAAATCATCTTCTTCGATGACATAATTTCATTTTTTATTCTAAAATATTTGAGAAATTGGACAAAAAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>488 402 90 10 10</canonical_bands>
                <polymorphic_bands>488 402 100 10</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>470 398 93 19 10 10</canonical_bands>
                <polymorphic_bands>470 398 103 19 10</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATCAAAATGTGTAGATTCATATAGC</pcr_primer_p1>
		<pcr_primer_p2>TTTTAGGTGTTTCAGCTATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>734</pcr_amplicon_size>
		<canonical_amplicon>CATCAAAATGTGTAGATTCATATAGCACAAATTGCAAAAATTAAAAAAATCGGTCCAAAAAGTCCGTTTCTGGGAACTCCTAGAAGATTCTAGAAGCTTTTTTGAAATCCCGCCAAAAATGAAAACTACGAAAAATTAGCGTTTTTTCCGAATTTTCGAGAGAAAAGTTAATTTTTTCTTGGAATTTTTGCAAATCTTTTAAACCTTTTTAGGTTTTTGAGCTATTTTTGAAAATGCTTTTTCGATTTTTTCGGTATTTTTCGTCTGAAATTTGATGGAACGGTGTCCGGCGAAGATTACTGTAGGCTACTGTAGACAGCTAATCTCCTTTTTGTAATTTTGTGCAAACGCAGTCACGTCAAAATGCAGACAAAAAAAACTAAAAGAAAAATTCGTTTTCTACAGTAATCTACAGTAATCTTCCATGCCAAGAACACCATTTAGTCGAATTTCAGGCAGAAATTCGGGATAATCGAAAAAGAATCATTGAAAATAGCTGAAAACCCTAAAAGGGTCTAAAAATTTTGCGAAAAATCGGAGAAAAAATCAATTCTTCTCTCGAAAAATCACTAATTTTTCGTAGTTTTCAGTTTCGGCGGGAATTCAAAAAGAGATACCAGAACCTTCTAGAAGTTTCTAGAAGCGTTTTAAACTTATTTTTCGAGGTTTTTCAAATTTATCTTGACAAAAAAACTCAAAAAAGAATCCTCAAAAAATAGCTGAAACACCTAAAA</canonical_amplicon>
		<polymorphic_amplicon>CATCAAAATGTGTAGATTCATATAGCACAAATTGCAAAAATTAAAAAAATCGGTCCAAAAAGTCCGTTTCTGGGAACTCCTAGAAGATTCTAGAAGCTTTTTTGAAATCCCGCCAAAAATGAAAACTACGAAAAATTAGCGTTTTTTCCGAATTTTCGAGAGAAAAGTTAATTTTTTCTTGGAATTTTTGCAAATCTTTTAAACCTTTTTAGGTTTTTGAGCTATTTTTGAAAATGCTTTTTCGATTTTTTCGGTATTTTTCGTCTGAAATTTGATGGAACGGTGTCCGGCGAAGATTACTGTAGGCTACTKTAGACAGCTAATCTCCTTTTTGTAATTTTGTGCAAACGCAGTCACGTCAAAATGCAGACAAAAAAAACTAAAAGAAAAATTCGTTTTCTACAGTAATCTACAGTAATCTTCCATGCCAAGAACACCATTTAGTCGAATTTCAGGCAGAAATTCGGGATAATCGAAAAAGAATCATTGAAAATAGCTGAAAACCCTAAAAGGGTCTAAAAATTTTGCGAAAAATCGGAGAAAAAATCAATTCTTCTCTCGAAAAATCACTAATTTTTCGTAGTTTTCAGTTTCGGCGGGAATTCAAAAAGAGATACCAGAACCTTCTAGAAGTTTCTAGAAGCGTTTTAAACTTATTTTTCGAGGTTTTTCAAATTTATCTTGACAAAAAAACTCAAAAAAGAATCCTCAAAAAATAGCTGAAACACCTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24138</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>202296</contig_pos>
        <strand></strand>
        <context>gacagctaat[C/T]tcctttttgt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGGAACGGTGTCCGGCGAAGATTACTGTAGGCTACTGTAGACAGCTAAT</left_flank>
        <right_flank>TCCTTTTTGTAATTTTGTGCAAACGCAGTCACGTCAAAATGCAGACAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATGAAAATTAGGTTTCTAGATGGGGTTTTGTCGAATTCTGGAAGCTCAATTTTGAAGTTTTGAGCTTTTAAATTCTCGAAATGGCTTCTGAAACTCTCTAGAAGATTCTGGAATTCTCACATTGCTCATTCTTAAAAAGAGGGCTTCGACCAACATTGTTTATCATTTTAATACATCAAAATGTGTAGATTCATATAGCACAAATTGCAAAAATTAAAAAAATCGGTCCAAAAAGTCCGTTTCTGGGAACTCCTAGAAGATTCTAGAAGCTTTTTTGAAATCCCGCCAAAAATGAAAACTACGAAAAATTAGCGTTTTTTCCGAATTTTCGAGAGAAAAGTTAATTTTTTCTTGGAATTTTTGCAAATCTTTTAAACCTTTTTAGGTTTTTGAGCTATTTTTGAAAATGCTTTTTCGATTTTTTCGGTATTTTTCGTCTGAAATTTGATGGAACGGTGTCCGGCGAAGATTACTGTAGGCTACTGTAGACAGCTAATCTCCTTTTTGTAATTTTGTGCAAACGCAGTCACGTCAAAATGCAGACAAAAAAAACTAAAAGAAAAATTCGTTTTCTACAGTAATCTACAGTAATCTTCCATGCCAAGAACACCATTTAGTCGAATTTCAGGCAGAAATTCGGGATAATCGAAAAAGAATCATTGAAAATAGCTGAAAACCCTAAAAGGGTCTAAAAATTTTGCGAAAAATCGGAGAAAAAATCAATTCTTCTCTCGAAAAATCACTAATTTTTCGTAGTTTTCAGTTTCGGCGGGAATTCAAAAAGAGATACCAGAACCTTCTAGAAGTTTCTAGAAGCGTTTTAAACTTATTTTTCGAGGTTTTTCAAATTTATCTTGACAAAAAAACTCAAAAAAGAATCCTCAAAAAATAGCTGAAACACCTAAAAAATTGTTCGAAATCATCTTCTTCGATGACATAATTTCATTTTTTATTCTAAAATATTTGAGAAATTGGACAAAAAATGTTTATTCGAAGAA</canonical>
            <polymorphic>GCATGAAAATTAGGTTTCTAGATGGGGTTTTGTCGAATTCTGGAAGCTCAATTTTGAAGTTTTGAGCTTTTAAATTCTCGAAATGGCTTCTGAAACTCTCTAGAAGATTCTGGAATTCTCACATTGCTCATTCTTAAAAAGAGGGCTTCGACCAACATTGTTTATCATTTTAATACATCAAAATGTGTAGATTCATATAGCACAAATTGCAAAAATTAAAAAAATCGGTCCAAAAAGTCCGTTTCTGGGAACTCCTAGAAGATTCTAGAAGCTTTTTTGAAATCCCGCCAAAAATGAAAACTACGAAAAATTAGCGTTTTTTCCGAATTTTCGAGAGAAAAGTTAATTTTTTCTTGGAATTTTTGCAAATCTTTTAAACCTTTTTAGGTTTTTGAGCTATTTTTGAAAATGCTTTTTCGATTTTTTCGGTATTTTTCGTCTGAAATTTGATGGAACGGTGTCCGGCGAAGATTACTGTAGGCTACTGTAGACAGCTAATYTCCTTTTTGTAATTTTGTGCAAACGCAGTCACGTCAAAATGCAGACAAAAAAAACTAAAAGAAAAATTCGTTTTCTACAGTAATCTACAGTAATCTTCCATGCCAAGAACACCATTTAGTCGAATTTCAGGCAGAAATTCGGGATAATCGAAAAAGAATCATTGAAAATAGCTGAAAACCCTAAAAGGGTCTAAAAATTTTGCGAAAAATCGGAGAAAAAATCAATTCTTCTCTCGAAAAATCACTAATTTTTCGTAGTTTTCAGTTTCGGCGGGAATTCAAAAAGAGATACCAGAACCTTCTAGAAGTTTCTAGAAGCGTTTTAAACTTATTTTTCGAGGTTTTTCAAATTTATCTTGACAAAAAAACTCAAAAAAGAATCCTCAAAAAATAGCTGAAACACCTAAAAAATTGTTCGAAATCATCTTCTTCGATGACATAATTTCATTTTTTATTCTAAAATATTTGAGAAATTGGACAAAAAATGTTTATTCGAAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCAAAATGTGTAGATTCATATAGC</pcr_primer_p1>
		<pcr_primer_p2>TTTTAGGTGTTTCAGCTATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>734</pcr_amplicon_size>
		<canonical_amplicon>CATCAAAATGTGTAGATTCATATAGCACAAATTGCAAAAATTAAAAAAATCGGTCCAAAAAGTCCGTTTCTGGGAACTCCTAGAAGATTCTAGAAGCTTTTTTGAAATCCCGCCAAAAATGAAAACTACGAAAAATTAGCGTTTTTTCCGAATTTTCGAGAGAAAAGTTAATTTTTTCTTGGAATTTTTGCAAATCTTTTAAACCTTTTTAGGTTTTTGAGCTATTTTTGAAAATGCTTTTTCGATTTTTTCGGTATTTTTCGTCTGAAATTTGATGGAACGGTGTCCGGCGAAGATTACTGTAGGCTACTGTAGACAGCTAATCTCCTTTTTGTAATTTTGTGCAAACGCAGTCACGTCAAAATGCAGACAAAAAAAACTAAAAGAAAAATTCGTTTTCTACAGTAATCTACAGTAATCTTCCATGCCAAGAACACCATTTAGTCGAATTTCAGGCAGAAATTCGGGATAATCGAAAAAGAATCATTGAAAATAGCTGAAAACCCTAAAAGGGTCTAAAAATTTTGCGAAAAATCGGAGAAAAAATCAATTCTTCTCTCGAAAAATCACTAATTTTTCGTAGTTTTCAGTTTCGGCGGGAATTCAAAAAGAGATACCAGAACCTTCTAGAAGTTTCTAGAAGCGTTTTAAACTTATTTTTCGAGGTTTTTCAAATTTATCTTGACAAAAAAACTCAAAAAAGAATCCTCAAAAAATAGCTGAAACACCTAAAA</canonical_amplicon>
		<polymorphic_amplicon>CATCAAAATGTGTAGATTCATATAGCACAAATTGCAAAAATTAAAAAAATCGGTCCAAAAAGTCCGTTTCTGGGAACTCCTAGAAGATTCTAGAAGCTTTTTTGAAATCCCGCCAAAAATGAAAACTACGAAAAATTAGCGTTTTTTCCGAATTTTCGAGAGAAAAGTTAATTTTTTCTTGGAATTTTTGCAAATCTTTTAAACCTTTTTAGGTTTTTGAGCTATTTTTGAAAATGCTTTTTCGATTTTTTCGGTATTTTTCGTCTGAAATTTGATGGAACGGTGTCCGGCGAAGATTACTGTAGGCTACTGTAGACAGCTAATYTCCTTTTTGTAATTTTGTGCAAACGCAGTCACGTCAAAATGCAGACAAAAAAAACTAAAAGAAAAATTCGTTTTCTACAGTAATCTACAGTAATCTTCCATGCCAAGAACACCATTTAGTCGAATTTCAGGCAGAAATTCGGGATAATCGAAAAAGAATCATTGAAAATAGCTGAAAACCCTAAAAGGGTCTAAAAATTTTGCGAAAAATCGGAGAAAAAATCAATTCTTCTCTCGAAAAATCACTAATTTTTCGTAGTTTTCAGTTTCGGCGGGAATTCAAAAAGAGATACCAGAACCTTCTAGAAGTTTCTAGAAGCGTTTTAAACTTATTTTTCGAGGTTTTTCAAATTTATCTTGACAAAAAAACTCAAAAAAGAATCCTCAAAAAATAGCTGAAACACCTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24139</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>202313</contig_pos>
        <strand></strand>
        <context>ttgtaatttt[G/T]tgcaaacgca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAGATTACTGTAGGCTACTGTAGACAGCTAATCTCCTTTTTGTAATTTT</left_flank>
        <right_flank>TGCAAACGCAGTCACGTCAAAATGCAGACAAAAAAAACTAAAAGAAAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAGATGGGGTTTTGTCGAATTCTGGAAGCTCAATTTTGAAGTTTTGAGCTTTTAAATTCTCGAAATGGCTTCTGAAACTCTCTAGAAGATTCTGGAATTCTCACATTGCTCATTCTTAAAAAGAGGGCTTCGACCAACATTGTTTATCATTTTAATACATCAAAATGTGTAGATTCATATAGCACAAATTGCAAAAATTAAAAAAATCGGTCCAAAAAGTCCGTTTCTGGGAACTCCTAGAAGATTCTAGAAGCTTTTTTGAAATCCCGCCAAAAATGAAAACTACGAAAAATTAGCGTTTTTTCCGAATTTTCGAGAGAAAAGTTAATTTTTTCTTGGAATTTTTGCAAATCTTTTAAACCTTTTTAGGTTTTTGAGCTATTTTTGAAAATGCTTTTTCGATTTTTTCGGTATTTTTCGTCTGAAATTTGATGGAACGGTGTCCGGCGAAGATTACTGTAGGCTACTGTAGACAGCTAATCTCCTTTTTGTAATTTTGTGCAAACGCAGTCACGTCAAAATGCAGACAAAAAAAACTAAAAGAAAAATTCGTTTTCTACAGTAATCTACAGTAATCTTCCATGCCAAGAACACCATTTAGTCGAATTTCAGGCAGAAATTCGGGATAATCGAAAAAGAATCATTGAAAATAGCTGAAAACCCTAAAAGGGTCTAAAAATTTTGCGAAAAATCGGAGAAAAAATCAATTCTTCTCTCGAAAAATCACTAATTTTTCGTAGTTTTCAGTTTCGGCGGGAATTCAAAAAGAGATACCAGAACCTTCTAGAAGTTTCTAGAAGCGTTTTAAACTTATTTTTCGAGGTTTTTCAAATTTATCTTGACAAAAAAACTCAAAAAAGAATCCTCAAAAAATAGCTGAAACACCTAAAAAATTGTTCGAAATCATCTTCTTCGATGACATAATTTCATTTTTTATTCTAAAATATTTGAGAAATTGGACAAAAAATGTTTATTCGAAGAATCAGACAAAAATTGGTC</canonical>
            <polymorphic>CTAGATGGGGTTTTGTCGAATTCTGGAAGCTCAATTTTGAAGTTTTGAGCTTTTAAATTCTCGAAATGGCTTCTGAAACTCTCTAGAAGATTCTGGAATTCTCACATTGCTCATTCTTAAAAAGAGGGCTTCGACCAACATTGTTTATCATTTTAATACATCAAAATGTGTAGATTCATATAGCACAAATTGCAAAAATTAAAAAAATCGGTCCAAAAAGTCCGTTTCTGGGAACTCCTAGAAGATTCTAGAAGCTTTTTTGAAATCCCGCCAAAAATGAAAACTACGAAAAATTAGCGTTTTTTCCGAATTTTCGAGAGAAAAGTTAATTTTTTCTTGGAATTTTTGCAAATCTTTTAAACCTTTTTAGGTTTTTGAGCTATTTTTGAAAATGCTTTTTCGATTTTTTCGGTATTTTTCGTCTGAAATTTGATGGAACGGTGTCCGGCGAAGATTACTGTAGGCTACTGTAGACAGCTAATCTCCTTTTTGTAATTTTKTGCAAACGCAGTCACGTCAAAATGCAGACAAAAAAAACTAAAAGAAAAATTCGTTTTCTACAGTAATCTACAGTAATCTTCCATGCCAAGAACACCATTTAGTCGAATTTCAGGCAGAAATTCGGGATAATCGAAAAAGAATCATTGAAAATAGCTGAAAACCCTAAAAGGGTCTAAAAATTTTGCGAAAAATCGGAGAAAAAATCAATTCTTCTCTCGAAAAATCACTAATTTTTCGTAGTTTTCAGTTTCGGCGGGAATTCAAAAAGAGATACCAGAACCTTCTAGAAGTTTCTAGAAGCGTTTTAAACTTATTTTTCGAGGTTTTTCAAATTTATCTTGACAAAAAAACTCAAAAAAGAATCCTCAAAAAATAGCTGAAACACCTAAAAAATTGTTCGAAATCATCTTCTTCGATGACATAATTTCATTTTTTATTCTAAAATATTTGAGAAATTGGACAAAAAATGTTTATTCGAAGAATCAGACAAAAATTGGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>258 158 133 115 104 80 66 59 15 12</canonical_bands>
                <polymorphic_bands>258 158 133 115 104 80 71 66 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATCAAAATGTGTAGATTCATATAGC</pcr_primer_p1>
		<pcr_primer_p2>TTTTAGGTGTTTCAGCTATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>734</pcr_amplicon_size>
		<canonical_amplicon>CATCAAAATGTGTAGATTCATATAGCACAAATTGCAAAAATTAAAAAAATCGGTCCAAAAAGTCCGTTTCTGGGAACTCCTAGAAGATTCTAGAAGCTTTTTTGAAATCCCGCCAAAAATGAAAACTACGAAAAATTAGCGTTTTTTCCGAATTTTCGAGAGAAAAGTTAATTTTTTCTTGGAATTTTTGCAAATCTTTTAAACCTTTTTAGGTTTTTGAGCTATTTTTGAAAATGCTTTTTCGATTTTTTCGGTATTTTTCGTCTGAAATTTGATGGAACGGTGTCCGGCGAAGATTACTGTAGGCTACTGTAGACAGCTAATCTCCTTTTTGTAATTTTGTGCAAACGCAGTCACGTCAAAATGCAGACAAAAAAAACTAAAAGAAAAATTCGTTTTCTACAGTAATCTACAGTAATCTTCCATGCCAAGAACACCATTTAGTCGAATTTCAGGCAGAAATTCGGGATAATCGAAAAAGAATCATTGAAAATAGCTGAAAACCCTAAAAGGGTCTAAAAATTTTGCGAAAAATCGGAGAAAAAATCAATTCTTCTCTCGAAAAATCACTAATTTTTCGTAGTTTTCAGTTTCGGCGGGAATTCAAAAAGAGATACCAGAACCTTCTAGAAGTTTCTAGAAGCGTTTTAAACTTATTTTTCGAGGTTTTTCAAATTTATCTTGACAAAAAAACTCAAAAAAGAATCCTCAAAAAATAGCTGAAACACCTAAAA</canonical_amplicon>
		<polymorphic_amplicon>CATCAAAATGTGTAGATTCATATAGCACAAATTGCAAAAATTAAAAAAATCGGTCCAAAAAGTCCGTTTCTGGGAACTCCTAGAAGATTCTAGAAGCTTTTTTGAAATCCCGCCAAAAATGAAAACTACGAAAAATTAGCGTTTTTTCCGAATTTTCGAGAGAAAAGTTAATTTTTTCTTGGAATTTTTGCAAATCTTTTAAACCTTTTTAGGTTTTTGAGCTATTTTTGAAAATGCTTTTTCGATTTTTTCGGTATTTTTCGTCTGAAATTTGATGGAACGGTGTCCGGCGAAGATTACTGTAGGCTACTGTAGACAGCTAATCTCCTTTTTGTAATTTTKTGCAAACGCAGTCACGTCAAAATGCAGACAAAAAAAACTAAAAGAAAAATTCGTTTTCTACAGTAATCTACAGTAATCTTCCATGCCAAGAACACCATTTAGTCGAATTTCAGGCAGAAATTCGGGATAATCGAAAAAGAATCATTGAAAATAGCTGAAAACCCTAAAAGGGTCTAAAAATTTTGCGAAAAATCGGAGAAAAAATCAATTCTTCTCTCGAAAAATCACTAATTTTTCGTAGTTTTCAGTTTCGGCGGGAATTCAAAAAGAGATACCAGAACCTTCTAGAAGTTTCTAGAAGCGTTTTAAACTTATTTTTCGAGGTTTTTCAAATTTATCTTGACAAAAAAACTCAAAAAAGAATCCTCAAAAAATAGCTGAAACACCTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24140</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>202427</contig_pos>
        <strand></strand>
        <context>cgaatttcag[G/A]cagaaattcg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAATCTACAGTAATCTTCCATGCCAAGAACACCATTTAGTCGAATTTCAG</left_flank>
        <right_flank>CAGAAATTCGGGATAATCGAAAAAGAATCATTGAAAATAGCTGAAAACCC</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTAAAAAGAGGGCTTCGACCAACATTGTTTATCATTTTAATACATCAAAATGTGTAGATTCATATAGCACAAATTGCAAAAATTAAAAAAATCGGTCCAAAAAGTCCGTTTCTGGGAACTCCTAGAAGATTCTAGAAGCTTTTTTGAAATCCCGCCAAAAATGAAAACTACGAAAAATTAGCGTTTTTTCCGAATTTTCGAGAGAAAAGTTAATTTTTTCTTGGAATTTTTGCAAATCTTTTAAACCTTTTTAGGTTTTTGAGCTATTTTTGAAAATGCTTTTTCGATTTTTTCGGTATTTTTCGTCTGAAATTTGATGGAACGGTGTCCGGCGAAGATTACTGTAGGCTACTGTAGACAGCTAATCTCCTTTTTGTAATTTTGTGCAAACGCAGTCACGTCAAAATGCAGACAAAAAAAACTAAAAGAAAAATTCGTTTTCTACAGTAATCTACAGTAATCTTCCATGCCAAGAACACCATTTAGTCGAATTTCAGGCAGAAATTCGGGATAATCGAAAAAGAATCATTGAAAATAGCTGAAAACCCTAAAAGGGTCTAAAAATTTTGCGAAAAATCGGAGAAAAAATCAATTCTTCTCTCGAAAAATCACTAATTTTTCGTAGTTTTCAGTTTCGGCGGGAATTCAAAAAGAGATACCAGAACCTTCTAGAAGTTTCTAGAAGCGTTTTAAACTTATTTTTCGAGGTTTTTCAAATTTATCTTGACAAAAAAACTCAAAAAAGAATCCTCAAAAAATAGCTGAAACACCTAAAAAATTGTTCGAAATCATCTTCTTCGATGACATAATTTCATTTTTTATTCTAAAATATTTGAGAAATTGGACAAAAAATGTTTATTCGAAGAATCAGACAAAAATTGGTCAAAAGGATGAATAAGGAATGGATAAATCGGTTAACCGTGCGGATTTTATAATGGATGGGGGCAGGAGAAGATGAGGGGGAGGATAATATACCCTGTATAATTTTTAAAAAAAGG</canonical>
            <polymorphic>TCTTAAAAAGAGGGCTTCGACCAACATTGTTTATCATTTTAATACATCAAAATGTGTAGATTCATATAGCACAAATTGCAAAAATTAAAAAAATCGGTCCAAAAAGTCCGTTTCTGGGAACTCCTAGAAGATTCTAGAAGCTTTTTTGAAATCCCGCCAAAAATGAAAACTACGAAAAATTAGCGTTTTTTCCGAATTTTCGAGAGAAAAGTTAATTTTTTCTTGGAATTTTTGCAAATCTTTTAAACCTTTTTAGGTTTTTGAGCTATTTTTGAAAATGCTTTTTCGATTTTTTCGGTATTTTTCGTCTGAAATTTGATGGAACGGTGTCCGGCGAAGATTACTGTAGGCTACTGTAGACAGCTAATCTCCTTTTTGTAATTTTGTGCAAACGCAGTCACGTCAAAATGCAGACAAAAAAAACTAAAAGAAAAATTCGTTTTCTACAGTAATCTACAGTAATCTTCCATGCCAAGAACACCATTTAGTCGAATTTCAGRCAGAAATTCGGGATAATCGAAAAAGAATCATTGAAAATAGCTGAAAACCCTAAAAGGGTCTAAAAATTTTGCGAAAAATCGGAGAAAAAATCAATTCTTCTCTCGAAAAATCACTAATTTTTCGTAGTTTTCAGTTTCGGCGGGAATTCAAAAAGAGATACCAGAACCTTCTAGAAGTTTCTAGAAGCGTTTTAAACTTATTTTTCGAGGTTTTTCAAATTTATCTTGACAAAAAAACTCAAAAAAGAATCCTCAAAAAATAGCTGAAACACCTAAAAAATTGTTCGAAATCATCTTCTTCGATGACATAATTTCATTTTTTATTCTAAAATATTTGAGAAATTGGACAAAAAATGTTTATTCGAAGAATCAGACAAAAATTGGTCAAAAGGATGAATAAGGAATGGATAAATCGGTTAACCGTGCGGATTTTATAATGGATGGGGGCAGGAGAAGATGAGGGGGAGGATAATATACCCTGTATAATTTTTAAAAAAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCAAAATGTGTAGATTCATATAGC</pcr_primer_p1>
		<pcr_primer_p2>TTTTAGGTGTTTCAGCTATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>734</pcr_amplicon_size>
		<canonical_amplicon>CATCAAAATGTGTAGATTCATATAGCACAAATTGCAAAAATTAAAAAAATCGGTCCAAAAAGTCCGTTTCTGGGAACTCCTAGAAGATTCTAGAAGCTTTTTTGAAATCCCGCCAAAAATGAAAACTACGAAAAATTAGCGTTTTTTCCGAATTTTCGAGAGAAAAGTTAATTTTTTCTTGGAATTTTTGCAAATCTTTTAAACCTTTTTAGGTTTTTGAGCTATTTTTGAAAATGCTTTTTCGATTTTTTCGGTATTTTTCGTCTGAAATTTGATGGAACGGTGTCCGGCGAAGATTACTGTAGGCTACTGTAGACAGCTAATCTCCTTTTTGTAATTTTGTGCAAACGCAGTCACGTCAAAATGCAGACAAAAAAAACTAAAAGAAAAATTCGTTTTCTACAGTAATCTACAGTAATCTTCCATGCCAAGAACACCATTTAGTCGAATTTCAGGCAGAAATTCGGGATAATCGAAAAAGAATCATTGAAAATAGCTGAAAACCCTAAAAGGGTCTAAAAATTTTGCGAAAAATCGGAGAAAAAATCAATTCTTCTCTCGAAAAATCACTAATTTTTCGTAGTTTTCAGTTTCGGCGGGAATTCAAAAAGAGATACCAGAACCTTCTAGAAGTTTCTAGAAGCGTTTTAAACTTATTTTTCGAGGTTTTTCAAATTTATCTTGACAAAAAAACTCAAAAAAGAATCCTCAAAAAATAGCTGAAACACCTAAAA</canonical_amplicon>
		<polymorphic_amplicon>CATCAAAATGTGTAGATTCATATAGCACAAATTGCAAAAATTAAAAAAATCGGTCCAAAAAGTCCGTTTCTGGGAACTCCTAGAAGATTCTAGAAGCTTTTTTGAAATCCCGCCAAAAATGAAAACTACGAAAAATTAGCGTTTTTTCCGAATTTTCGAGAGAAAAGTTAATTTTTTCTTGGAATTTTTGCAAATCTTTTAAACCTTTTTAGGTTTTTGAGCTATTTTTGAAAATGCTTTTTCGATTTTTTCGGTATTTTTCGTCTGAAATTTGATGGAACGGTGTCCGGCGAAGATTACTGTAGGCTACTGTAGACAGCTAATCTCCTTTTTGTAATTTTGTGCAAACGCAGTCACGTCAAAATGCAGACAAAAAAAACTAAAAGAAAAATTCGTTTTCTACAGTAATCTACAGTAATCTTCCATGCCAAGAACACCATTTAGTCGAATTTCAGRCAGAAATTCGGGATAATCGAAAAAGAATCATTGAAAATAGCTGAAAACCCTAAAAGGGTCTAAAAATTTTGCGAAAAATCGGAGAAAAAATCAATTCTTCTCTCGAAAAATCACTAATTTTTCGTAGTTTTCAGTTTCGGCGGGAATTCAAAAAGAGATACCAGAACCTTCTAGAAGTTTCTAGAAGCGTTTTAAACTTATTTTTCGAGGTTTTTCAAATTTATCTTGACAAAAAAACTCAAAAAAGAATCCTCAAAAAATAGCTGAAACACCTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24141</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>216728</contig_pos>
        <strand>+</strand>
        <context>CATTCTCATC[A/C]TATTCTTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGATTTTAGAATTTTCTGGAACCTTCAGAATCCCCACCCTCATTCTCATC</left_flank>
        <right_flank>TATTCTTTTCCAGCCCACCGACTCTATCGCTTCTGGAGTGTCCCGACGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGATTTGAGTAAAAATTTGAAGGTTTTGACTTGAAATTTGAGCTTTTTAGACTGGAAAATGTGGATTTTTTGACTGTAAAAAGCTCTCAAAAGTGTTGCTAAAACGTGGAAAAATATGAAATTTAAGCTCGAAAATTCTGAAATTTGCGCCGGAAATTTTATGGAACTTCTGGCTGAAAATCTTGAATTTTTGTCTGAAATTAAAAAAAAAATTTTGGCTGAAAATCTTGAATTCTTGACTGAAAATCTTTAATTTTTGACAAAAATGTCTTGAAAATTTGGCTGGGAATGCTGGAATTTTTGACTGGAAGTCAAGTCATTATAGACTGGAAATCTTGAAATCTAGAAAATTCTGAAGTTTTAGAATTCAGGATTCTGAAATCTGATTCCGAATTCTGAAATTCTTAGAAATTCAAGTTAGATTTTTTCCATTGACTCCACGACACCAGGATTTTAGAATTTTCTGGAACCTTCAGAATCCCCACCCTCATTCTCATCCTATTCTTTTCCAGCCCACCGACTCTATCGCTTCTGGAGTGTCCCGACGTCGTCGTACGTCTGCGAACCTCTCCAAATCGGAATCCGAAGACAAATCAGACTCCCAGCCACGTGGCAACAAAGAACGTCGAACGTCTCAAGAACCAATCCATCGTGTCGTCTACTTCTCGCCCGGCACCGCCGTCCCCATGGAAATAGACATGGCGATGAGCCACTGTACGTGTCAGCAGCCATTCGATGCGAATCGATTCTATGTTCAATGTGATATGTGCGCGAGATGGTATCACGGCGATTGTGTGAATATTACCGAGAAAATGGCACTGAAGTTCGAGCAATGGACGTGTGAGCAGTGTATTGAGGAGCAGGAAAGGGTGAAGGAACAACCAGCGCTGTATTGCGTCTGCAAGAAGCCCTATGATGATACTAAGTGAGTTTGAAGGGAAAAGAAGCGGGGTAAACGGTCAACGTAAATAGCTCAAAAGTTGGTCAATTCGACTCTAA</canonical>
            <polymorphic>TAGATTTGAGTAAAAATTTGAAGGTTTTGACTTGAAATTTGAGCTTTTTAGACTGGAAAATGTGGATTTTTTGACTGTAAAAAGCTCTCAAAAGTGTTGCTAAAACGTGGAAAAATATGAAATTTAAGCTCGAAAATTCTGAAATTTGCGCCGGAAATTTTATGGAACTTCTGGCTGAAAATCTTGAATTTTTGTCTGAAATTAAAAAAAAAATTTTGGCTGAAAATCTTGAATTCTTGACTGAAAATCTTTAATTTTTGACAAAAATGTCTTGAAAATTTGGCTGGGAATGCTGGAATTTTTGACTGGAAGTCAAGTCATTATAGACTGGAAATCTTGAAATCTAGAAAATTCTGAAGTTTTAGAATTCAGGATTCTGAAATCTGATTCCGAATTCTGAAATTCTTAGAAATTCAAGTTAGATTTTTTCCATTGACTCCACGACACCAGGATTTTAGAATTTTCTGGAACCTTCAGAATCCCCACCCTCATTCTCATCMTATTCTTTTCCAGCCCACCGACTCTATCGCTTCTGGAGTGTCCCGACGTCGTCGTACGTCTGCGAACCTCTCCAAATCGGAATCCGAAGACAAATCAGACTCCCAGCCACGTGGCAACAAAGAACGTCGAACGTCTCAAGAACCAATCCATCGTGTCGTCTACTTCTCGCCCGGCACCGCCGTCCCCATGGAAATAGACATGGCGATGAGCCACTGTACGTGTCAGCAGCCATTCGATGCGAATCGATTCTATGTTCAATGTGATATGTGCGCGAGATGGTATCACGGCGATTGTGTGAATATTACCGAGAAAATGGCACTGAAGTTCGAGCAATGGACGTGTGAGCAGTGTATTGAGGAGCAGGAAAGGGTGAAGGAACAACCAGCGCTGTATTGCGTCTGCAAGAAGCCCTATGATGATACTAAGTGAGTTTGAAGGGAAAAGAAGCGGGGTAAACGGTCAACGTAAATAGCTCAAAAGTTGGTCAATTCGACTCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAAATCTTGAAATCTAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TCTGATTTGTCTTCGGATTC</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>TGGAAATCTTGAAATCTAGAAAATTCTGAAGTTTTAGAATTCAGGATTCTGAAATCTGATTCCGAATTCTGAAATTCTTAGAAATTCAAGTTAGATTTTTTCCATTGACTCCACGACACCAGGATTTTAGAATTTTCTGGAACCTTCAGAATCCCCACCCTCATTCTCATCCTATTCTTTTCCAGCCCACCGACTCTATCGCTTCTGGAGTGTCCCGACGTCGTCGTACGTCTGCGAACCTCTCCAAATCGGAATCCGAAGACAAATCAGA</canonical_amplicon>
		<polymorphic_amplicon>TGGAAATCTTGAAATCTAGAAAATTCTGAAGTTTTAGAATTCAGGATTCTGAAATCTGATTCCGAATTCTGAAATTCTTAGAAATTCAAGTTAGATTTTTTCCATTGACTCCACGACACCAGGATTTTAGAATTTTCTGGAACCTTCAGAATCCCCACCCTCATTCTCATCMTATTCTTTTCCAGCCCACCGACTCTATCGCTTCTGGAGTGTCCCGACGTCGTCGTACGTCTGCGAACCTCTCCAAATCGGAATCCGAAGACAAATCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24142</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>216878</contig_pos>
        <strand>+</strand>
        <context>GAACCAATCC[A/C]TCGTGTCGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTCCCAGCCACGTGGCAACAAAGAACGTCGAACGTCTCAAGAACCAATCC</left_flank>
        <right_flank>TCGTGTCGTCTACTTCTCGCCCGGCACCGCCGTCCCCATGGAAATAGACA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGGAAATTTTATGGAACTTCTGGCTGAAAATCTTGAATTTTTGTCTGAAATTAAAAAAAAAATTTTGGCTGAAAATCTTGAATTCTTGACTGAAAATCTTTAATTTTTGACAAAAATGTCTTGAAAATTTGGCTGGGAATGCTGGAATTTTTGACTGGAAGTCAAGTCATTATAGACTGGAAATCTTGAAATCTAGAAAATTCTGAAGTTTTAGAATTCAGGATTCTGAAATCTGATTCCGAATTCTGAAATTCTTAGAAATTCAAGTTAGATTTTTTCCATTGACTCCACGACACCAGGATTTTAGAATTTTCTGGAACCTTCAGAATCCCCACCCTCATTCTCATCCTATTCTTTTCCAGCCCACCGACTCTATCGCTTCTGGAGTGTCCCGACGTCGTCGTACGTCTGCGAACCTCTCCAAATCGGAATCCGAAGACAAATCAGACTCCCAGCCACGTGGCAACAAAGAACGTCGAACGTCTCAAGAACCAATCCATCGTGTCGTCTACTTCTCGCCCGGCACCGCCGTCCCCATGGAAATAGACATGGCGATGAGCCACTGTACGTGTCAGCAGCCATTCGATGCGAATCGATTCTATGTTCAATGTGATATGTGCGCGAGATGGTATCACGGCGATTGTGTGAATATTACCGAGAAAATGGCACTGAAGTTCGAGCAATGGACGTGTGAGCAGTGTATTGAGGAGCAGGAAAGGGTGAAGGAACAACCAGCGCTGTATTGCGTCTGCAAGAAGCCCTATGATGATACTAAGTGAGTTTGAAGGGAAAAGAAGCGGGGTAAACGGTCAACGTAAATAGCTCAAAAGTTGGTCAATTCGACTCTAAAATAGTTAAAAAATTAGTCAAAAATGGACTTTAAAATCTCAAAATTAGTAAAAAATGATCCTAAGTAAGACAAAACGAAATTGGACCTAAACGACCCTAAAATAGCCCATGAATGTTCTCGAATCATCCACAATCCTCTTTTTTCCAGAT</canonical>
            <polymorphic>CCGGAAATTTTATGGAACTTCTGGCTGAAAATCTTGAATTTTTGTCTGAAATTAAAAAAAAAATTTTGGCTGAAAATCTTGAATTCTTGACTGAAAATCTTTAATTTTTGACAAAAATGTCTTGAAAATTTGGCTGGGAATGCTGGAATTTTTGACTGGAAGTCAAGTCATTATAGACTGGAAATCTTGAAATCTAGAAAATTCTGAAGTTTTAGAATTCAGGATTCTGAAATCTGATTCCGAATTCTGAAATTCTTAGAAATTCAAGTTAGATTTTTTCCATTGACTCCACGACACCAGGATTTTAGAATTTTCTGGAACCTTCAGAATCCCCACCCTCATTCTCATCCTATTCTTTTCCAGCCCACCGACTCTATCGCTTCTGGAGTGTCCCGACGTCGTCGTACGTCTGCGAACCTCTCCAAATCGGAATCCGAAGACAAATCAGACTCCCAGCCACGTGGCAACAAAGAACGTCGAACGTCTCAAGAACCAATCCMTCGTGTCGTCTACTTCTCGCCCGGCACCGCCGTCCCCATGGAAATAGACATGGCGATGAGCCACTGTACGTGTCAGCAGCCATTCGATGCGAATCGATTCTATGTTCAATGTGATATGTGCGCGAGATGGTATCACGGCGATTGTGTGAATATTACCGAGAAAATGGCACTGAAGTTCGAGCAATGGACGTGTGAGCAGTGTATTGAGGAGCAGGAAAGGGTGAAGGAACAACCAGCGCTGTATTGCGTCTGCAAGAAGCCCTATGATGATACTAAGTGAGTTTGAAGGGAAAAGAAGCGGGGTAAACGGTCAACGTAAATAGCTCAAAAGTTGGTCAATTCGACTCTAAAATAGTTAAAAAATTAGTCAAAAATGGACTTTAAAATCTCAAAATTAGTAAAAAATGATCCTAAGTAAGACAAAACGAAATTGGACCTAAACGACCCTAAAATAGCCCATGAATGTTCTCGAATCATCCACAATCCTCTTTTTTCCAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCTATCGCTTCTGGAGTGT</pcr_primer_p1>
		<pcr_primer_p2>GCACATATCACATTGAACATAGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACTCTATCGCTTCTGGAGTGTCCCGACGTCGTCGTACGTCTGCGAACCTCTCCAAATCGGAATCCGAAGACAAATCAGACTCCCAGCCACGTGGCAACAAAGAACGTCGAACGTCTCAAGAACCAATCCATCGTGTCGTCTACTTCTCGCCCGGCACCGCCGTCCCCATGGAAATAGACATGGCGATGAGCCACTGTACGTGTCAGCAGCCATTCGATGCGAATCGATTCTATGTTCAATGTGATATGTGC</canonical_amplicon>
		<polymorphic_amplicon>ACTCTATCGCTTCTGGAGTGTCCCGACGTCGTCGTACGTCTGCGAACCTCTCCAAATCGGAATCCGAAGACAAATCAGACTCCCAGCCACGTGGCAACAAAGAACGTCGAACGTCTCAAGAACCAATCCMTCGTGTCGTCTACTTCTCGCCCGGCACCGCCGTCCCCATGGAAATAGACATGGCGATGAGCCACTGTACGTGTCAGCAGCCATTCGATGCGAATCGATTCTATGTTCAATGTGATATGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24143</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>217056</contig_pos>
        <strand>+</strand>
        <context>CACTGAAGTT[C/T]GAGCAATGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGTATCACGGCGATTGTGTGAATATTACCGAGAAAATGGCACTGAAGTT</left_flank>
        <right_flank>GAGCAATGGACGTGTGAGCAGTGTATTGAGGAGCAGGAAAGGGTGAAGGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAAATCTTGAAATCTAGAAAATTCTGAAGTTTTAGAATTCAGGATTCTGAAATCTGATTCCGAATTCTGAAATTCTTAGAAATTCAAGTTAGATTTTTTCCATTGACTCCACGACACCAGGATTTTAGAATTTTCTGGAACCTTCAGAATCCCCACCCTCATTCTCATCCTATTCTTTTCCAGCCCACCGACTCTATCGCTTCTGGAGTGTCCCGACGTCGTCGTACGTCTGCGAACCTCTCCAAATCGGAATCCGAAGACAAATCAGACTCCCAGCCACGTGGCAACAAAGAACGTCGAACGTCTCAAGAACCAATCCATCGTGTCGTCTACTTCTCGCCCGGCACCGCCGTCCCCATGGAAATAGACATGGCGATGAGCCACTGTACGTGTCAGCAGCCATTCGATGCGAATCGATTCTATGTTCAATGTGATATGTGCGCGAGATGGTATCACGGCGATTGTGTGAATATTACCGAGAAAATGGCACTGAAGTTCGAGCAATGGACGTGTGAGCAGTGTATTGAGGAGCAGGAAAGGGTGAAGGAACAACCAGCGCTGTATTGCGTCTGCAAGAAGCCCTATGATGATACTAAGTGAGTTTGAAGGGAAAAGAAGCGGGGTAAACGGTCAACGTAAATAGCTCAAAAGTTGGTCAATTCGACTCTAAAATAGTTAAAAAATTAGTCAAAAATGGACTTTAAAATCTCAAAATTAGTAAAAAATGATCCTAAGTAAGACAAAACGAAATTGGACCTAAACGACCCTAAAATAGCCCATGAATGTTCTCGAATCATCCACAATCCTCTTTTTTCCAGATTCTATGTCGGATGTGACAGCTGTCAAGGATGGTTCCATCCGGAATGCGTCGGAACGACACGCGAACAAGCCGAACAGGCGGCTGACTATAACTGTCCGAGCTGTCGCGATGGATACGAATCGGAAGCATCCGAAGCGTCGGTAGCCAGCAGAGCCAGTGTTGAATTGACGTAATTTAT</canonical>
            <polymorphic>TGGAAATCTTGAAATCTAGAAAATTCTGAAGTTTTAGAATTCAGGATTCTGAAATCTGATTCCGAATTCTGAAATTCTTAGAAATTCAAGTTAGATTTTTTCCATTGACTCCACGACACCAGGATTTTAGAATTTTCTGGAACCTTCAGAATCCCCACCCTCATTCTCATCCTATTCTTTTCCAGCCCACCGACTCTATCGCTTCTGGAGTGTCCCGACGTCGTCGTACGTCTGCGAACCTCTCCAAATCGGAATCCGAAGACAAATCAGACTCCCAGCCACGTGGCAACAAAGAACGTCGAACGTCTCAAGAACCAATCCATCGTGTCGTCTACTTCTCGCCCGGCACCGCCGTCCCCATGGAAATAGACATGGCGATGAGCCACTGTACGTGTCAGCAGCCATTCGATGCGAATCGATTCTATGTTCAATGTGATATGTGCGCGAGATGGTATCACGGCGATTGTGTGAATATTACCGAGAAAATGGCACTGAAGTTYGAGCAATGGACGTGTGAGCAGTGTATTGAGGAGCAGGAAAGGGTGAAGGAACAACCAGCGCTGTATTGCGTCTGCAAGAAGCCCTATGATGATACTAAGTGAGTTTGAAGGGAAAAGAAGCGGGGTAAACGGTCAACGTAAATAGCTCAAAAGTTGGTCAATTCGACTCTAAAATAGTTAAAAAATTAGTCAAAAATGGACTTTAAAATCTCAAAATTAGTAAAAAATGATCCTAAGTAAGACAAAACGAAATTGGACCTAAACGACCCTAAAATAGCCCATGAATGTTCTCGAATCATCCACAATCCTCTTTTTTCCAGATTCTATGTCGGATGTGACAGCTGTCAAGGATGGTTCCATCCGGAATGCGTCGGAACGACACGCGAACAAGCCGAACAGGCGGCTGACTATAACTGTCCGAGCTGTCGCGATGGATACGAATCGGAAGCATCCGAAGCGTCGGTAGCCAGCAGAGCCAGTGTTGAATTGACGTAATTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>300 208 164 128 107 83 10</canonical_bands>
                <polymorphic_bands>300 247 208 128 107 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCGATTCTATGTTCAATGTGAT</pcr_primer_p1>
		<pcr_primer_p2>TGACCAACTTTTGAGCTATTTAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATCGATTCTATGTTCAATGTGATATGTGCGCGAGATGGTATCACGGCGATTGTGTGAATATTACCGAGAAAATGGCACTGAAGTTCGAGCAATGGACGTGTGAGCAGTGTATTGAGGAGCAGGAAAGGGTGAAGGAACAACCAGCGCTGTATTGCGTCTGCAAGAAGCCCTATGATGATACTAAGTGAGTTTGAAGGGAAAAGAAGCGGGGTAAACGGTCAACGTAAATAGCTCAAAAGTTGGTCA</canonical_amplicon>
		<polymorphic_amplicon>ATCGATTCTATGTTCAATGTGATATGTGCGCGAGATGGTATCACGGCGATTGTGTGAATATTACCGAGAAAATGGCACTGAAGTTYGAGCAATGGACGTGTGAGCAGTGTATTGAGGAGCAGGAAAGGGTGAAGGAACAACCAGCGCTGTATTGCGTCTGCAAGAAGCCCTATGATGATACTAAGTGAGTTTGAAGGGAAAAGAAGCGGGGTAAACGGTCAACGTAAATAGCTCAAAAGTTGGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24144</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>252800</contig_pos>
        <strand></strand>
        <context>TGTAAGACCA[T/C]CACCGATTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCGCACCGCTTTTGCCCCAAATCATGCCAAAGTCTTGCCCTGTAAGACCA</left_flank>
        <right_flank>CACCGATTATTCTAGACCTTCCATTCTGAATATCTATTTCCATCCTAGAC</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTGAGCTGGTAGCAATGCGGCACCTCCAACGTTGGGCCTACAAGTTCCATTCTTCGAGGGGCTTATTTGAACAAAATCAATAGATACATATTCTTCTCGATTCCCACACATTTAAGACATTCTAGAAATTTCCAAATCTGTGATGCTGAACGCTTGGAAATCTTTGTACCCAGAAAAAAGAATCGAATTGTTTTTTTGCCAGAAATCTCACGAGCTTGTTTATTTTTGGTGTTTCTCACATGATAAGTCACCTATCTCTCATTAGACGCTCGATTTGGAAATGTCTGGAATTCTAGAAGTTTCCATACAGAGATCGGGAAGATATTACTCTACTTTAATTACATCTACTCTAATTCTTCAATCCAAAGACTCGGCAACATACCCACAATAAGCCCAATCTGCTGTTGAGATGTCTGATAACCGCCTCTGATCAAACTGCTGATTTCCGTCGCACCGCTTTTGCCCCAAATCATGCCAAAGTCTTGCCCTGTAAGACCATCACCGATTATTCTAGACCTTCCATTCTGAATATCTATTTCCATCCTAGACCTTCCACTTCCCACGCTCTATATTCGTTTACCCAATGTGACGTAAAATCAGCACTAACTCTGAGAATCCGATTACCTTCCGCCTCCTGTTATTCCCGAAAATTATGTTCCTGATCAGAAATCATAAGAGAACTAACGACGTTGATCTTTTCTCTCCCTTCTAAATTATACCTCAACTTGTTTTCAGAATTATACGAAAACAGACATGTGCATTTGGAATGCACCTGGTTGTCACAAGAAGTCGTTGTTTTTGTCTTGTCTCCCTGAGTGACTAGGCTCCGCCCATCGAGCTCTGCGAGCCCATTTTTCATTCTTTCAGATTCTGAAAGTCAGACTCGAACTAACAAGATGAGTGACAATTTTGAAGTAGTGACCAGGGTCATCACATTCTTCTTTCCCTATGATTCGAAAGTGGAAGGTGAGCGAGGGATCCAAGAATCATTTTTTTTAA</canonical>
            <polymorphic>GCTGAGCTGGTAGCAATGCGGCACCTCCAACGTTGGGCCTACAAGTTCCATTCTTCGAGGGGCTTATTTGAACAAAATCAATAGATACATATTCTTCTCGATTCCCACACATTTAAGACATTCTAGAAATTTCCAAATCTGTGATGCTGAACGCTTGGAAATCTTTGTACCCAGAAAAAAGAATCGAATTGTTTTTTTGCCAGAAATCTCACGAGCTTGTTTATTTTTGGTGTTTCTCACATGATAAGTCACCTATCTCTCATTAGACGCTCGATTTGGAAATGTCTGGAATTCTAGAAGTTTCCATACAGAGATCGGGAAGATATTACTCTACTTTAATTACATCTACTCTAATTCTTCAATCCAAAGACTCGGCAACATACCCACAATAAGCCCAATCTGCTGTTGAGATGTCTGATAACCGCCTCTGATCAAACTGCTGATTTCCGTCGCACCGCTTTTGCCCCAAATCATGCCAAAGTCTTGCCCTGTAAGACCAYCACCGATTATTCTAGACCTTCCATTCTGAATATCTATTTCCATCCTAGACCTTCCACTTCCCACGCTCTATATTCGTTTACCCAATGTGACGTAAAATCAGCACTAACTCTGAGAATCCGATTACCTTCCGCCTCCTGTTATTCCCGAAAATTATGTTCCTGATCAGAAATCATAAGAGAACTAACGACGTTGATCTTTTCTCTCCCTTCTAAATTATACCTCAACTTGTTTTCAGAATTATACGAAAACAGACATGTGCATTTGGAATGCACCTGGTTGTCACAAGAAGTCGTTGTTTTTGTCTTGTCTCCCTGAGTGACTAGGCTCCGCCCATCGAGCTCTGCGAGCCCATTTTTCATTCTTTCAGATTCTGAAAGTCAGACTCGAACTAACAAGATGAGTGACAATTTTGAAGTAGTGACCAGGGTCATCACATTCTTCTTTCCCTATGATTCGAAAGTGGAAGGTGAGCGAGGGATCCAAGAATCATTTTTTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGAGATCGGGAAGATATTACT</pcr_primer_p1>
		<pcr_primer_p2>GAAGGTCTAGGATGGAAATAGAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACAGAGATCGGGAAGATATTACTCTACTTTAATTACATCTACTCTAATTCTTCAATCCAAAGACTCGGCAACATACCCACAATAAGCCCAATCTGCTGTTGAGATGTCTGATAACCGCCTCTGATCAAACTGCTGATTTCCGTCGCACCGCTTTTGCCCCAAATCATGCCAAAGTCTTGCCCTGTAAGACCATCACCGATTATTCTAGACCTTCCATTCTGAATATCTATTTCCATCCTAGACCTTC</canonical_amplicon>
		<polymorphic_amplicon>ACAGAGATCGGGAAGATATTACTCTACTTTAATTACATCTACTCTAATTCTTCAATCCAAAGACTCGGCAACATACCCACAATAAGCCCAATCTGCTGTTGAGATGTCTGATAACCGCCTCTGATCAAACTGCTGATTTCCGTCGCACCGCTTTTGCCCCAAATCATGCCAAAGTCTTGCCCTGTAAGACCAYCACCGATTATTCTAGACCTTCCATTCTGAATATCTATTTCCATCCTAGACCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24145</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>381226</contig_pos>
        <strand>+</strand>
        <context>GTATCGCTGA[C/T]GTCGAGTTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGCCACAGGCGGTCTTTTCTCGAATAACTTCGTTGGATGTATCGCTGA</left_flank>
        <right_flank>GTCGAGTTGAATGGAGTGAAATTGGATTTAATGGCGACAGCGATTGATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAATTGCTGAGATTTTGTTAGTCTGATACTCTGAGGTTCTGAAAATTTTAATTTGAGAATCTGTGAATTTTAAATTCATTCTGAAATTCTGAAATTCGGAGATTTCGATATTCCGATATTCCGAAAATATGAGATTCTAAGATTCCAAAATTTTGAAATTCAAGATTTTGAAGATTTTGAAATTGCGAAGCTCTGAGATCCTTCAATTCTCCAATTCAAAAAATATCTTAATTTTCCAGCTACGAACTTGGCGGCGGTGCTGCTCATTTGATATCGGAAGACCGTGTTGATGATGGAAAAGAGCATAGTGTTCGTTTCGAACGAAAAGGAAGAGAAGGTCAAATGAAAATCGATAATTATCGAGAAATCAATGGAAGAAGTACCGGAATATTGGCAATGTTAAATGTGGATGGAAACATTTTTGTGGGCGGAGTTCCAGAAATTTCCAAAGCCACAGGCGGTCTTTTCTCGAATAACTTCGTTGGATGTATCGCTGACGTCGAGTTGAATGGAGTGAAATTGGATTTAATGGCGACAGCGATTGATGGAAAAAATGTGAAGCCGTGCGATGAATGGATGCACCGAAAGAGATGGTTGTATAGAAGAAGAATGCGGTGAATAGTTAAGGATGAGCAACGTTGGATTCTAGAAGATTTTTTTTTCAATTGCAAAACTGCCCGATTTCTGTGATAATTTATTTTCTTTCGCCTTCCTTTTTTTTCCTTTTTATATCTCATCTGGAAACCGAACGATTTCCAATTTTATTTACATTCAATTTCACGTTCAACTTTCCCCTTCTTTCCTCTGTCTTGATTCAACTGACTCATCAGAAGACAAAAAAAAAAGAAAAGAAAGTATCACTTTAAACCAAGTCTGCCCATGAAAAAAAGGGAAGTGGGGACATATAAAAGAAAGTCTGAAACAGGATATATATTGATATCTCTAACTACCATCGCCACCAAATTATATCGATGACGCCGATCTTAAACTTGCGCATC</canonical>
            <polymorphic>CTGAATTGCTGAGATTTTGTTAGTCTGATACTCTGAGGTTCTGAAAATTTTAATTTGAGAATCTGTGAATTTTAAATTCATTCTGAAATTCTGAAATTCGGAGATTTCGATATTCCGATATTCCGAAAATATGAGATTCTAAGATTCCAAAATTTTGAAATTCAAGATTTTGAAGATTTTGAAATTGCGAAGCTCTGAGATCCTTCAATTCTCCAATTCAAAAAATATCTTAATTTTCCAGCTACGAACTTGGCGGCGGTGCTGCTCATTTGATATCGGAAGACCGTGTTGATGATGGAAAAGAGCATAGTGTTCGTTTCGAACGAAAAGGAAGAGAAGGTCAAATGAAAATCGATAATTATCGAGAAATCAATGGAAGAAGTACCGGAATATTGGCAATGTTAAATGTGGATGGAAACATTTTTGTGGGCGGAGTTCCAGAAATTTCCAAAGCCACAGGCGGTCTTTTCTCGAATAACTTCGTTGGATGTATCGCTGAYGTCGAGTTGAATGGAGTGAAATTGGATTTAATGGCGACAGCGATTGATGGAAAAAATGTGAAGCCGTGCGATGAATGGATGCACCGAAAGAGATGGTTGTATAGAAGAAGAATGCGGTGAATAGTTAAGGATGAGCAACGTTGGATTCTAGAAGATTTTTTTTTCAATTGCAAAACTGCCCGATTTCTGTGATAATTTATTTTCTTTCGCCTTCCTTTTTTTTCCTTTTTATATCTCATCTGGAAACCGAACGATTTCCAATTTTATTTACATTCAATTTCACGTTCAACTTTCCCCTTCTTTCCTCTGTCTTGATTCAACTGACTCATCAGAAGACAAAAAAAAAAGAAAAGAAAGTATCACTTTAAACCAAGTCTGCCCATGAAAAAAAGGGAAGTGGGGACATATAAAAGAAAGTCTGAAACAGGATATATATTGATATCTCTAACTACCATCGCCACCAAATTATATCGATGACGCCGATCTTAAACTTGCGCATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACGTC</site>
                <isoschizomers>
                    <enzyme>AatII</enzyme>
                    <enzyme>ZraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>499 478 23</canonical_bands>
                <polymorphic_bands>977 23</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>499 218 144 139</canonical_bands>
                <polymorphic_bands>638 218 144</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAAATCAATGGAAGAAGTACC</pcr_primer_p1>
		<pcr_primer_p2>GCATTCTTCTTCTATACAACCAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GAGAAATCAATGGAAGAAGTACCGGAATATTGGCAATGTTAAATGTGGATGGAAACATTTTTGTGGGCGGAGTTCCAGAAATTTCCAAAGCCACAGGCGGTCTTTTCTCGAATAACTTCGTTGGATGTATCGCTGACGTCGAGTTGAATGGAGTGAAATTGGATTTAATGGCGACAGCGATTGATGGAAAAAATGTGAAGCCGTGCGATGAATGGATGCACCGAAAGAGATGGTTGTATAGAAGAAGAATGC</canonical_amplicon>
		<polymorphic_amplicon>GAGAAATCAATGGAAGAAGTACCGGAATATTGGCAATGTTAAATGTGGATGGAAACATTTTTGTGGGCGGAGTTCCAGAAATTTCCAAAGCCACAGGCGGTCTTTTCTCGAATAACTTCGTTGGATGTATCGCTGAYGTCGAGTTGAATGGAGTGAAATTGGATTTAATGGCGACAGCGATTGATGGAAAAAATGTGAAGCCGTGCGATGAATGGATGCACCGAAAGAGATGGTTGTATAGAAGAAGAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24146</snp_id>
        <super_contig>c000301181.Contig3</super_contig>
        <contig_pos>381265</contig_pos>
        <strand>+</strand>
        <context>TAATGGCGAC[A/G]GCGATTGATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTATCGCTGACGTCGAGTTGAATGGAGTGAAATTGGATTTAATGGCGAC</left_flank>
        <right_flank>GCGATTGATGGAAAAAATGTGAAGCCGTGCGATGAATGGATGCACCGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGAAAATTTTAATTTGAGAATCTGTGAATTTTAAATTCATTCTGAAATTCTGAAATTCGGAGATTTCGATATTCCGATATTCCGAAAATATGAGATTCTAAGATTCCAAAATTTTGAAATTCAAGATTTTGAAGATTTTGAAATTGCGAAGCTCTGAGATCCTTCAATTCTCCAATTCAAAAAATATCTTAATTTTCCAGCTACGAACTTGGCGGCGGTGCTGCTCATTTGATATCGGAAGACCGTGTTGATGATGGAAAAGAGCATAGTGTTCGTTTCGAACGAAAAGGAAGAGAAGGTCAAATGAAAATCGATAATTATCGAGAAATCAATGGAAGAAGTACCGGAATATTGGCAATGTTAAATGTGGATGGAAACATTTTTGTGGGCGGAGTTCCAGAAATTTCCAAAGCCACAGGCGGTCTTTTCTCGAATAACTTCGTTGGATGTATCGCTGACGTCGAGTTGAATGGAGTGAAATTGGATTTAATGGCGACAGCGATTGATGGAAAAAATGTGAAGCCGTGCGATGAATGGATGCACCGAAAGAGATGGTTGTATAGAAGAAGAATGCGGTGAATAGTTAAGGATGAGCAACGTTGGATTCTAGAAGATTTTTTTTTCAATTGCAAAACTGCCCGATTTCTGTGATAATTTATTTTCTTTCGCCTTCCTTTTTTTTCCTTTTTATATCTCATCTGGAAACCGAACGATTTCCAATTTTATTTACATTCAATTTCACGTTCAACTTTCCCCTTCTTTCCTCTGTCTTGATTCAACTGACTCATCAGAAGACAAAAAAAAAAGAAAAGAAAGTATCACTTTAAACCAAGTCTGCCCATGAAAAAAAGGGAAGTGGGGACATATAAAAGAAAGTCTGAAACAGGATATATATTGATATCTCTAACTACCATCGCCACCAAATTATATCGATGACGCCGATCTTAAACTTGCGCATCACTTCACTTTCCATCCCCATTCACATTACGAATATCTCC</canonical>
            <polymorphic>TCTGAAAATTTTAATTTGAGAATCTGTGAATTTTAAATTCATTCTGAAATTCTGAAATTCGGAGATTTCGATATTCCGATATTCCGAAAATATGAGATTCTAAGATTCCAAAATTTTGAAATTCAAGATTTTGAAGATTTTGAAATTGCGAAGCTCTGAGATCCTTCAATTCTCCAATTCAAAAAATATCTTAATTTTCCAGCTACGAACTTGGCGGCGGTGCTGCTCATTTGATATCGGAAGACCGTGTTGATGATGGAAAAGAGCATAGTGTTCGTTTCGAACGAAAAGGAAGAGAAGGTCAAATGAAAATCGATAATTATCGAGAAATCAATGGAAGAAGTACCGGAATATTGGCAATGTTAAATGTGGATGGAAACATTTTTGTGGGCGGAGTTCCAGAAATTTCCAAAGCCACAGGCGGTCTTTTCTCGAATAACTTCGTTGGATGTATCGCTGACGTCGAGTTGAATGGAGTGAAATTGGATTTAATGGCGACRGCGATTGATGGAAAAAATGTGAAGCCGTGCGATGAATGGATGCACCGAAAGAGATGGTTGTATAGAAGAAGAATGCGGTGAATAGTTAAGGATGAGCAACGTTGGATTCTAGAAGATTTTTTTTTCAATTGCAAAACTGCCCGATTTCTGTGATAATTTATTTTCTTTCGCCTTCCTTTTTTTTCCTTTTTATATCTCATCTGGAAACCGAACGATTTCCAATTTTATTTACATTCAATTTCACGTTCAACTTTCCCCTTCTTTCCTCTGTCTTGATTCAACTGACTCATCAGAAGACAAAAAAAAAAGAAAAGAAAGTATCACTTTAAACCAAGTCTGCCCATGAAAAAAAGGGAAGTGGGGACATATAAAAGAAAGTCTGAAACAGGATATATATTGATATCTCTAACTACCATCGCCACCAAATTATATCGATGACGCCGATCTTAAACTTGCGCATCACTTCACTTTCCATCCCCATTCACATTACGAATATCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTCTTTTCTCGAATAACTT</pcr_primer_p1>
		<pcr_primer_p2>GCGAAAGAAAATAAATTATCACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGGTCTTTTCTCGAATAACTTCGTTGGATGTATCGCTGACGTCGAGTTGAATGGAGTGAAATTGGATTTAATGGCGACAGCGATTGATGGAAAAAATGTGAAGCCGTGCGATGAATGGATGCACCGAAAGAGATGGTTGTATAGAAGAAGAATGCGGTGAATAGTTAAGGATGAGCAACGTTGGATTCTAGAAGATTTTTTTTTCAATTGCAAAACTGCCCGATTTCTGTGATAATTTATTTTCTTTCGC</canonical_amplicon>
		<polymorphic_amplicon>CGGTCTTTTCTCGAATAACTTCGTTGGATGTATCGCTGACGTCGAGTTGAATGGAGTGAAATTGGATTTAATGGCGACRGCGATTGATGGAAAAAATGTGAAGCCGTGCGATGAATGGATGCACCGAAAGAGATGGTTGTATAGAAGAAGAATGCGGTGAATAGTTAAGGATGAGCAACGTTGGATTCTAGAAGATTTTTTTTTCAATTGCAAAACTGCCCGATTTCTGTGATAATTTATTTTCTTTCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24147</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>25411</contig_pos>
        <strand>+</strand>
        <context>AACGTTTTTT[A/T]ACTTAGGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTGACTGAAAACGAAAAAAACACAGTTTCAAGAAATTGAAACGTTTTTT</left_flank>
        <right_flank>ACTTAGGATTTGAAAAATTGGAATTTGAAGAATTCTAGATTTAAAAAAAT</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGAGTGCATCTGCTTTTTTCTCTCTCCAGCATGCAAGAGACGACAGACCAGTATGCGAAAGACGAGACACTGCAAACGTTTTTTTTTTGGGTTGTTGGGAGGTCGACCGTTTTTTTCTCTTTTTGTCAGTCAGTTTCCACCAGTTTATAGTTCAAAATTTGCCCTTTTCTGCGATAGGTCTCCAGTTCTGCTATTTCTTTAGCTCGCTTCATTTTGCAAATTAACGTTTATTTTATTCTATTAATTTCGAAATATAATTAAAATTAAATATTTCAGTAGGATGTCGGACAACGAGAAAAAAGTTGTACTGCTCAAGACCAAAAAATCGATGAGCTGGATTCGAAATGAGTTGTTCGGTCCTATTCAAGAAGCTGCTCGCAAGCCGTATCCTTTCAGTAAGTTTTGTTTTTTTTTGCAGTTTTTGGCGGTGAACACTGTAATATGTCAATTGACTGAAAACGAAAAAAACACAGTTTCAAGAAATTGAAACGTTTTTTAACTTAGGATTTGAAAAATTGGAATTTGAAGAATTCTAGATTTAAAAAAATAGTTTGATTTTGAAAAAAATGTCGTATTTTTAAGAAAATGTTGTGTTTAATTTAAGAAATTGCTGGATTGTAATGTTTCTCTAGATTTTTAGAACCCAAAAATGTCTTTAAACCCGAATTAAAGTCCAGAACTTTCTTCAAAACCCAATGTTTTTCAAAATCCAAAATTTTTCTTAAAATCGAAAGTAACCATATAGAGCCAAAAATCAATTCGCCAAAATTGTCAATGTAAACTCAATAAATGCAAAAAAAGTGTTTTATTCTCGCCTCTAGACATTCTTCGCCTCTAGACATTTTCTTCGCCTCTAGACATTTTCATATCCCGTTTCTACCATACTTGTGGAAAAGATGGCCGGCCCGCGGGCCGGGCTGGAAAAAATTACACATGACCGGCCCGCGGGCCAGTTCGCTTTTTGAAAATTTCGAAATTTTAGAGCGAATCATCATTTT</canonical>
            <polymorphic>AGAGAGTGCATCTGCTTTTTTCTCTCTCCAGCATGCAAGAGACGACAGACCAGTATGCGAAAGACGAGACACTGCAAACGTTTTTTTTTTGGGTTGTTGGGAGGTCGACCGTTTTTTTCTCTTTTTGTCAGTCAGTTTCCACCAGTTTATAGTTCAAAATTTGCCCTTTTCTGCGATAGGTCTCCAGTTCTGCTATTTCTTTAGCTCGCTTCATTTTGCAAATTAACGTTTATTTTATTCTATTAATTTCGAAATATAATTAAAATTAAATATTTCAGTAGGATGTCGGACAACGAGAAAAAAGTTGTACTGCTCAAGACCAAAAAATCGATGAGCTGGATTCGAAATGAGTTGTTCGGTCCTATTCAAGAAGCTGCTCGCAAGCCGTATCCTTTCAGTAAGTTTTGTTTTTTTTTGCAGTTTTTGGCGGTGAACACTGTAATATGTCAATTGACTGAAAACGAAAAAAACACAGTTTCAAGAAATTGAAACGTTTTTTWACTTAGGATTTGAAAAATTGGAATTTGAAGAATTCTAGATTTAAAAAAATAGTTTGATTTTGAAAAAAATGTCGTATTTTTAAGAAAATGTTGTGTTTAATTTAAGAAATTGCTGGATTGTAATGTTTCTCTAGATTTTTAGAACCCAAAAATGTCTTTAAACCCGAATTAAAGTCCAGAACTTTCTTCAAAACCCAATGTTTTTCAAAATCCAAAATTTTTCTTAAAATCGAAAGTAACCATATAGAGCCAAAAATCAATTCGCCAAAATTGTCAATGTAAACTCAATAAATGCAAAAAAAGTGTTTTATTCTCGCCTCTAGACATTCTTCGCCTCTAGACATTTTCTTCGCCTCTAGACATTTTCATATCCCGTTTCTACCATACTTGTGGAAAAGATGGCCGGCCCGCGGGCCGGGCTGGAAAAAATTACACATGACCGGCCCGCGGGCCAGTTCGCTTTTTGAAAATTTCGAAATTTTAGAGCGAATCATCATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>276 232 223 56 55 43 39 20 17 17 11 6 5</canonical_bands>
                <polymorphic_bands>276 275 223 56 55 39 20 17 17 11 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTATCCTTTCAGTAAGTTTTGT</pcr_primer_p1>
		<pcr_primer_p2>AAACATTACAATCCAGCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CGTATCCTTTCAGTAAGTTTTGTTTTTTTTTGCAGTTTTTGGCGGTGAACACTGTAATATGTCAATTGACTGAAAACGAAAAAAACACAGTTTCAAGAAATTGAAACGTTTTTTAACTTAGGATTTGAAAAATTGGAATTTGAAGAATTCTAGATTTAAAAAAATAGTTTGATTTTGAAAAAAATGTCGTATTTTTAAGAAAATGTTGTGTTTAATTTAAGAAATTGCTGGATTGTAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>CGTATCCTTTCAGTAAGTTTTGTTTTTTTTTGCAGTTTTTGGCGGTGAACACTGTAATATGTCAATTGACTGAAAACGAAAAAAACACAGTTTCAAGAAATTGAAACGTTTTTTWACTTAGGATTTGAAAAATTGGAATTTGAAGAATTCTAGATTTAAAAAAATAGTTTGATTTTGAAAAAAATGTCGTATTTTTAAGAAAATGTTGTGTTTAATTTAAGAAATTGCTGGATTGTAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24148</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>25441</contig_pos>
        <strand></strand>
        <context>GGAATTTGAA[G/C]AATTCTAGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AAGAAATTGAAACGTTTTTTAACTTAGGATTTGAAAAATTGGAATTTGAA</left_flank>
        <right_flank>AATTCTAGATTTAAAAAAATAGTTTGATTTTGAAAAAAATGTCGTATTTT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCATGCAAGAGACGACAGACCAGTATGCGAAAGACGAGACACTGCAAACGTTTTTTTTTTGGGTTGTTGGGAGGTCGACCGTTTTTTTCTCTTTTTGTCAGTCAGTTTCCACCAGTTTATAGTTCAAAATTTGCCCTTTTCTGCGATAGGTCTCCAGTTCTGCTATTTCTTTAGCTCGCTTCATTTTGCAAATTAACGTTTATTTTATTCTATTAATTTCGAAATATAATTAAAATTAAATATTTCAGTAGGATGTCGGACAACGAGAAAAAAGTTGTACTGCTCAAGACCAAAAAATCGATGAGCTGGATTCGAAATGAGTTGTTCGGTCCTATTCAAGAAGCTGCTCGCAAGCCGTATCCTTTCAGTAAGTTTTGTTTTTTTTTGCAGTTTTTGGCGGTGAACACTGTAATATGTCAATTGACTGAAAACGAAAAAAACACAGTTTCAAGAAATTGAAACGTTTTTTAACTTAGGATTTGAAAAATTGGAATTTGAAGAATTCTAGATTTAAAAAAATAGTTTGATTTTGAAAAAAATGTCGTATTTTTAAGAAAATGTTGTGTTTAATTTAAGAAATTGCTGGATTGTAATGTTTCTCTAGATTTTTAGAACCCAAAAATGTCTTTAAACCCGAATTAAAGTCCAGAACTTTCTTCAAAACCCAATGTTTTTCAAAATCCAAAATTTTTCTTAAAATCGAAAGTAACCATATAGAGCCAAAAATCAATTCGCCAAAATTGTCAATGTAAACTCAATAAATGCAAAAAAAGTGTTTTATTCTCGCCTCTAGACATTCTTCGCCTCTAGACATTTTCTTCGCCTCTAGACATTTTCATATCCCGTTTCTACCATACTTGTGGAAAAGATGGCCGGCCCGCGGGCCGGGCTGGAAAAAATTACACATGACCGGCCCGCGGGCCAGTTCGCTTTTTGAAAATTTCGAAATTTTAGAGCGAATCATCATTTTTCAAGATGGTTTTTCTTCTTAGTGAATGGA</canonical>
            <polymorphic>GCATGCAAGAGACGACAGACCAGTATGCGAAAGACGAGACACTGCAAACGTTTTTTTTTTGGGTTGTTGGGAGGTCGACCGTTTTTTTCTCTTTTTGTCAGTCAGTTTCCACCAGTTTATAGTTCAAAATTTGCCCTTTTCTGCGATAGGTCTCCAGTTCTGCTATTTCTTTAGCTCGCTTCATTTTGCAAATTAACGTTTATTTTATTCTATTAATTTCGAAATATAATTAAAATTAAATATTTCAGTAGGATGTCGGACAACGAGAAAAAAGTTGTACTGCTCAAGACCAAAAAATCGATGAGCTGGATTCGAAATGAGTTGTTCGGTCCTATTCAAGAAGCTGCTCGCAAGCCGTATCCTTTCAGTAAGTTTTGTTTTTTTTTGCAGTTTTTGGCGGTGAACACTGTAATATGTCAATTGACTGAAAACGAAAAAAACACAGTTTCAAGAAATTGAAACGTTTTTTAACTTAGGATTTGAAAAATTGGAATTTGAASAATTCTAGATTTAAAAAAATAGTTTGATTTTGAAAAAAATGTCGTATTTTTAAGAAAATGTTGTGTTTAATTTAAGAAATTGCTGGATTGTAATGTTTCTCTAGATTTTTAGAACCCAAAAATGTCTTTAAACCCGAATTAAAGTCCAGAACTTTCTTCAAAACCCAATGTTTTTCAAAATCCAAAATTTTTCTTAAAATCGAAAGTAACCATATAGAGCCAAAAATCAATTCGCCAAAATTGTCAATGTAAACTCAATAAATGCAAAAAAAGTGTTTTATTCTCGCCTCTAGACATTCTTCGCCTCTAGACATTTTCTTCGCCTCTAGACATTTTCATATCCCGTTTCTACCATACTTGTGGAAAAGATGGCCGGCCCGCGGGCCGGGCTGGAAAAAATTACACATGACCGGCCCGCGGGCCAGTTCGCTTTTTGAAAATTTCGAAATTTTAGAGCGAATCATCATTTTTCAAGATGGTTTTTCTTCTTAGTGAATGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>364 253 185 127 54 9 8</canonical_bands>
                <polymorphic_bands>364 253 194 127 54 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTATCCTTTCAGTAAGTTTTGT</pcr_primer_p1>
		<pcr_primer_p2>AAACATTACAATCCAGCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CGTATCCTTTCAGTAAGTTTTGTTTTTTTTTGCAGTTTTTGGCGGTGAACACTGTAATATGTCAATTGACTGAAAACGAAAAAAACACAGTTTCAAGAAATTGAAACGTTTTTTAACTTAGGATTTGAAAAATTGGAATTTGAAGAATTCTAGATTTAAAAAAATAGTTTGATTTTGAAAAAAATGTCGTATTTTTAAGAAAATGTTGTGTTTAATTTAAGAAATTGCTGGATTGTAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>CGTATCCTTTCAGTAAGTTTTGTTTTTTTTTGCAGTTTTTGGCGGTGAACACTGTAATATGTCAATTGACTGAAAACGAAAAAAACACAGTTTCAAGAAATTGAAACGTTTTTTAACTTAGGATTTGAAAAATTGGAATTTGAASAATTCTAGATTTAAAAAAATAGTTTGATTTTGAAAAAAATGTCGTATTTTTAAGAAAATGTTGTGTTTAATTTAAGAAATTGCTGGATTGTAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24149</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>32878</contig_pos>
        <strand>+</strand>
        <context>ACTTCCGACT[C/T]TAAAAAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCGGCCTAATCACTAAACTTTACCGCTATTCACAAATCACTTCCGACT</left_flank>
        <right_flank>TAAAAAATTTAATTTACCAAAAATTTCCGATTGCTGGACGCCGAAGCATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTAGTCAGTCTGGTGTCATTTGATATAGTCAAAACACATTTTTAAACCTTATTGAGTTCTTTTACCAGAAGCTTCAAAATTGAACCGAGTCATAACTTTCTAGATTAACTCACTCGAGAAGTCCAGATTCCAAGTACCACACCACTGTCCAGAACTTGTTTTCTTCATCATCTGACTCCCGTAGCACAAATAGTAGTGCTTTTCTGACTTGCCGAAGTTCAGAGATTTCCAAATTTCCACGACTAGCTTTCTGATTTTGATAAACTTCTTTCATAAAGTCAGACGCCATATCAATATGATCTGTCAAAACTAAAAATTCAAGACATTCCGACAATGAAGATGCATTGATCATTTTGATTCCAGGGATAGTAGTTTGATTGCAAGGCGTGCCTGAAAAATGTGATTTGAGAAAAATGGAAAGTCGAATTGAAATGACTGAAATTTATGTTTCGGCCTAATCACTAAACTTTACCGCTATTCACAAATCACTTCCGACTTTAAAAAATTTAATTTACCAAAAATTTCCGATTGCTGGACGCCGAAGCATCCAGAATCATCAATTTTGCCATTAAAGGATAGTTCAAGATAGTCACAAAAGAAAATGGAGGCCCGACATCAAATGGTTATTTCAACTATTCTCCACAATCAAAAATTTACAATACAATTCTTTAAAAACTTACAAATCGCGGCAATGGTTCTCAGTGATGGATGATTCTTGGCGAATGTTCTCAATTGATGCTCAGTGACAGATGTCCATGAGCAGTCCAAAAACTCCAGAGCTTCCAATCTAACTTCAGCTGCCAACAGATTTTTAATAGAATTTGTGTCAATTTGTGCGGTGGCGACGGTACCCGAAATATCCAAATATTTGAGACTCTTCAAATCCGATAATTCTTTGTATCCATTGATATCATCAAAGTATACGTAGGACATTGAGAGTTTTTGTAGATTTTTGATGTTTCCGATTCCTTGAAGACTCGGTAGGTAATAGGCAAACG</canonical>
            <polymorphic>CGTTAGTCAGTCTGGTGTCATTTGATATAGTCAAAACACATTTTTAAACCTTATTGAGTTCTTTTACCAGAAGCTTCAAAATTGAACCGAGTCATAACTTTCTAGATTAACTCACTCGAGAAGTCCAGATTCCAAGTACCACACCACTGTCCAGAACTTGTTTTCTTCATCATCTGACTCCCGTAGCACAAATAGTAGTGCTTTTCTGACTTGCCGAAGTTCAGAGATTTCCAAATTTCCACGACTAGCTTTCTGATTTTGATAAACTTCTTTCATAAAGTCAGACGCCATATCAATATGATCTGTCAAAACTAAAAATTCAAGACATTCCGACAATGAAGATGCATTGATCATTTTGATTCCAGGGATAGTAGTTTGATTGCAAGGCGTGCCTGAAAAATGTGATTTGAGAAAAATGGAAAGTCGAATTGAAATGACTGAAATTTATGTTTCGGCCTAATCACTAAACTTTACCGCTATTCACAAATCACTTCCGACTYTAAAAAATTTAATTTACCAAAAATTTCCGATTGCTGGACGCCGAAGCATCCAGAATCATCAATTTTGCCATTAAAGGATAGTTCAAGATAGTCACAAAAGAAAATGGAGGCCCGACATCAAATGGTTATTTCAACTATTCTCCACAATCAAAAATTTACAATACAATTCTTTAAAAACTTACAAATCGCGGCAATGGTTCTCAGTGATGGATGATTCTTGGCGAATGTTCTCAATTGATGCTCAGTGACAGATGTCCATGAGCAGTCCAAAAACTCCAGAGCTTCCAATCTAACTTCAGCTGCCAACAGATTTTTAATAGAATTTGTGTCAATTTGTGCGGTGGCGACGGTACCCGAAATATCCAAATATTTGAGACTCTTCAAATCCGATAATTCTTTGTATCCATTGATATCATCAAAGTATACGTAGGACATTGAGAGTTTTTGTAGATTTTTGATGTTTCCGATTCCTTGAAGACTCGGTAGGTAATAGGCAAACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>456 328 171 45</canonical_bands>
                <polymorphic_bands>627 328 45</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>393 186 143 100 63 62 44 9</canonical_bands>
                <polymorphic_bands>402 186 143 100 63 62 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCCAGGGATAGTAGTTTGATT</pcr_primer_p1>
		<pcr_primer_p2>TCCATTTTCTTTTGTGACTATCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCCAGGGATAGTAGTTTGATTGCAAGGCGTGCCTGAAAAATGTGATTTGAGAAAAATGGAAAGTCGAATTGAAATGACTGAAATTTATGTTTCGGCCTAATCACTAAACTTTACCGCTATTCACAAATCACTTCCGACTTTAAAAAATTTAATTTACCAAAAATTTCCGATTGCTGGACGCCGAAGCATCCAGAATCATCAATTTTGCCATTAAAGGATAGTTCAAGATAGTCACAAAAGAAAATGGA</canonical_amplicon>
		<polymorphic_amplicon>ATTCCAGGGATAGTAGTTTGATTGCAAGGCGTGCCTGAAAAATGTGATTTGAGAAAAATGGAAAGTCGAATTGAAATGACTGAAATTTATGTTTCGGCCTAATCACTAAACTTTACCGCTATTCACAAATCACTTCCGACTYTAAAAAATTTAATTTACCAAAAATTTCCGATTGCTGGACGCCGAAGCATCCAGAATCATCAATTTTGCCATTAAAGGATAGTTCAAGATAGTCACAAAAGAAAATGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24150</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>32894</contig_pos>
        <strand></strand>
        <context>AATTTAATTT[A/T]YCAAAAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAACTTTACCGCTATTCACAAATCACTTCCGACTTTAAAAAATTTAATTT</left_flank>
        <right_flank>CCAAAAATTTCCGATTGCTGGACGCCGAAGCATCCAGAATCATCAATTTT</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCATTTGATATAGTCAAAACACATTTTTAAACCTTATTGAGTTCTTTTACCAGAAGCTTCAAAATTGAACCGAGTCATAACTTTCTAGATTAACTCACTCGAGAAGTCCAGATTCCAAGTACCACACCACTGTCCAGAACTTGTTTTCTTCATCATCTGACTCCCGTAGCACAAATAGTAGTGCTTTTCTGACTTGCCGAAGTTCAGAGATTTCCAAATTTCCACGACTAGCTTTCTGATTTTGATAAACTTCTTTCATAAAGTCAGACGCCATATCAATATGATCTGTCAAAACTAAAAATTCAAGACATTCCGACAATGAAGATGCATTGATCATTTTGATTCCAGGGATAGTAGTTTGATTGCAAGGCGTGCCTGAAAAATGTGATTTGAGAAAAATGGAAAGTCGAATTGAAATGACTGAAATTTATGTTTCGGCCTAATCACTAAACTTTACCGCTATTCACAAATCACTTCCGACTTTAAAAAATTTAATTTACCAAAAATTTCCGATTGCTGGACGCCGAAGCATCCAGAATCATCAATTTTGCCATTAAAGGATAGTTCAAGATAGTCACAAAAGAAAATGGAGGCCCGACATCAAATGGTTATTTCAACTATTCTCCACAATCAAAAATTTACAATACAATTCTTTAAAAACTTACAAATCGCGGCAATGGTTCTCAGTGATGGATGATTCTTGGCGAATGTTCTCAATTGATGCTCAGTGACAGATGTCCATGAGCAGTCCAAAAACTCCAGAGCTTCCAATCTAACTTCAGCTGCCAACAGATTTTTAATAGAATTTGTGTCAATTTGTGCGGTGGCGACGGTACCCGAAATATCCAAATATTTGAGACTCTTCAAATCCGATAATTCTTTGTATCCATTGATATCATCAAAGTATACGTAGGACATTGAGAGTTTTTGTAGATTTTTGATGTTTCCGATTCCTTGAAGACTCGGTAGGTAATAGGCAAACGAAATGTTGAGAGCAAG</canonical>
            <polymorphic>GTCATTTGATATAGTCAAAACACATTTTTAAACCTTATTGAGTTCTTTTACCAGAAGCTTCAAAATTGAACCGAGTCATAACTTTCTAGATTAACTCACTCGAGAAGTCCAGATTCCAAGTACCACACCACTGTCCAGAACTTGTTTTCTTCATCATCTGACTCCCGTAGCACAAATAGTAGTGCTTTTCTGACTTGCCGAAGTTCAGAGATTTCCAAATTTCCACGACTAGCTTTCTGATTTTGATAAACTTCTTTCATAAAGTCAGACGCCATATCAATATGATCTGTCAAAACTAAAAATTCAAGACATTCCGACAATGAAGATGCATTGATCATTTTGATTCCAGGGATAGTAGTTTGATTGCAAGGCGTGCCTGAAAAATGTGATTTGAGAAAAATGGAAAGTCGAATTGAAATGACTGAAATTTATGTTTCGGCCTAATCACTAAACTTTACCGCTATTCACAAATCACTTCCGACTTTAAAAAATTTAATTTWCCAAAAATTTCCGATTGCTGGACGCCGAAGCATCCAGAATCATCAATTTTGCCATTAAAGGATAGTTCAAGATAGTCACAAAAGAAAATGGAGGCCCGACATCAAATGGTTATTTCAACTATTCTCCACAATCAAAAATTTACAATACAATTCTTTAAAAACTTACAAATCGCGGCAATGGTTCTCAGTGATGGATGATTCTTGGCGAATGTTCTCAATTGATGCTCAGTGACAGATGTCCATGAGCAGTCCAAAAACTCCAGAGCTTCCAATCTAACTTCAGCTGCCAACAGATTTTTAATAGAATTTGTGTCAATTTGTGCGGTGGCGACGGTACCCGAAATATCCAAATATTTGAGACTCTTCAAATCCGATAATTCTTTGTATCCATTGATATCATCAAAGTATACGTAGGACATTGAGAGTTTTTGTAGATTTTTGATGTTTCCGATTCCTTGAAGACTCGGTAGGTAATAGGCAAACGAAATGTTGAGAGCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCAGGGATAGTAGTTTGATT</pcr_primer_p1>
		<pcr_primer_p2>TCCATTTTCTTTTGTGACTATCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCCAGGGATAGTAGTTTGATTGCAAGGCGTGCCTGAAAAATGTGATTTGAGAAAAATGGAAAGTCGAATTGAAATGACTGAAATTTATGTTTCGGCCTAATCACTAAACTTTACCGCTATTCACAAATCACTTCCGACTTTAAAAAATTTAATTTACCAAAAATTTCCGATTGCTGGACGCCGAAGCATCCAGAATCATCAATTTTGCCATTAAAGGATAGTTCAAGATAGTCACAAAAGAAAATGGA</canonical_amplicon>
		<polymorphic_amplicon>ATTCCAGGGATAGTAGTTTGATTGCAAGGCGTGCCTGAAAAATGTGATTTGAGAAAAATGGAAAGTCGAATTGAAATGACTGAAATTTATGTTTCGGCCTAATCACTAAACTTTACCGCTATTCACAAATCACTTCCGACTTTAAAAAATTTAATTTWCCAAAAATTTCCGATTGCTGGACGCCGAAGCATCCAGAATCATCAATTTTGCCATTAAAGGATAGTTCAAGATAGTCACAAAAGAAAATGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24151</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>32895</contig_pos>
        <strand></strand>
        <context>ATTTAATTTW[C/T]CAAAAATTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACTTTACCGCTATTCACAAATCACTTCCGACTTTAAAAAATTTAATTTA</left_flank>
        <right_flank>CAAAAATTTCCGATTGCTGGACGCCGAAGCATCCAGAATCATCAATTTTG</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATTTGATATAGTCAAAACACATTTTTAAACCTTATTGAGTTCTTTTACCAGAAGCTTCAAAATTGAACCGAGTCATAACTTTCTAGATTAACTCACTCGAGAAGTCCAGATTCCAAGTACCACACCACTGTCCAGAACTTGTTTTCTTCATCATCTGACTCCCGTAGCACAAATAGTAGTGCTTTTCTGACTTGCCGAAGTTCAGAGATTTCCAAATTTCCACGACTAGCTTTCTGATTTTGATAAACTTCTTTCATAAAGTCAGACGCCATATCAATATGATCTGTCAAAACTAAAAATTCAAGACATTCCGACAATGAAGATGCATTGATCATTTTGATTCCAGGGATAGTAGTTTGATTGCAAGGCGTGCCTGAAAAATGTGATTTGAGAAAAATGGAAAGTCGAATTGAAATGACTGAAATTTATGTTTCGGCCTAATCACTAAACTTTACCGCTATTCACAAATCACTTCCGACTTTAAAAAATTTAATTTACCAAAAATTTCCGATTGCTGGACGCCGAAGCATCCAGAATCATCAATTTTGCCATTAAAGGATAGTTCAAGATAGTCACAAAAGAAAATGGAGGCCCGACATCAAATGGTTATTTCAACTATTCTCCACAATCAAAAATTTACAATACAATTCTTTAAAAACTTACAAATCGCGGCAATGGTTCTCAGTGATGGATGATTCTTGGCGAATGTTCTCAATTGATGCTCAGTGACAGATGTCCATGAGCAGTCCAAAAACTCCAGAGCTTCCAATCTAACTTCAGCTGCCAACAGATTTTTAATAGAATTTGTGTCAATTTGTGCGGTGGCGACGGTACCCGAAATATCCAAATATTTGAGACTCTTCAAATCCGATAATTCTTTGTATCCATTGATATCATCAAAGTATACGTAGGACATTGAGAGTTTTTGTAGATTTTTGATGTTTCCGATTCCTTGAAGACTCGGTAGGTAATAGGCAAACGAAATGTTGAGAGCAAGA</canonical>
            <polymorphic>TCATTTGATATAGTCAAAACACATTTTTAAACCTTATTGAGTTCTTTTACCAGAAGCTTCAAAATTGAACCGAGTCATAACTTTCTAGATTAACTCACTCGAGAAGTCCAGATTCCAAGTACCACACCACTGTCCAGAACTTGTTTTCTTCATCATCTGACTCCCGTAGCACAAATAGTAGTGCTTTTCTGACTTGCCGAAGTTCAGAGATTTCCAAATTTCCACGACTAGCTTTCTGATTTTGATAAACTTCTTTCATAAAGTCAGACGCCATATCAATATGATCTGTCAAAACTAAAAATTCAAGACATTCCGACAATGAAGATGCATTGATCATTTTGATTCCAGGGATAGTAGTTTGATTGCAAGGCGTGCCTGAAAAATGTGATTTGAGAAAAATGGAAAGTCGAATTGAAATGACTGAAATTTATGTTTCGGCCTAATCACTAAACTTTACCGCTATTCACAAATCACTTCCGACTTTAAAAAATTTAATTTAYCAAAAATTTCCGATTGCTGGACGCCGAAGCATCCAGAATCATCAATTTTGCCATTAAAGGATAGTTCAAGATAGTCACAAAAGAAAATGGAGGCCCGACATCAAATGGTTATTTCAACTATTCTCCACAATCAAAAATTTACAATACAATTCTTTAAAAACTTACAAATCGCGGCAATGGTTCTCAGTGATGGATGATTCTTGGCGAATGTTCTCAATTGATGCTCAGTGACAGATGTCCATGAGCAGTCCAAAAACTCCAGAGCTTCCAATCTAACTTCAGCTGCCAACAGATTTTTAATAGAATTTGTGTCAATTTGTGCGGTGGCGACGGTACCCGAAATATCCAAATATTTGAGACTCTTCAAATCCGATAATTCTTTGTATCCATTGATATCATCAAAGTATACGTAGGACATTGAGAGTTTTTGTAGATTTTTGATGTTTCCGATTCCTTGAAGACTCGGTAGGTAATAGGCAAACGAAATGTTGAGAGCAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCAGGGATAGTAGTTTGATT</pcr_primer_p1>
		<pcr_primer_p2>TCCATTTTCTTTTGTGACTATCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCCAGGGATAGTAGTTTGATTGCAAGGCGTGCCTGAAAAATGTGATTTGAGAAAAATGGAAAGTCGAATTGAAATGACTGAAATTTATGTTTCGGCCTAATCACTAAACTTTACCGCTATTCACAAATCACTTCCGACTTTAAAAAATTTAATTTACCAAAAATTTCCGATTGCTGGACGCCGAAGCATCCAGAATCATCAATTTTGCCATTAAAGGATAGTTCAAGATAGTCACAAAAGAAAATGGA</canonical_amplicon>
		<polymorphic_amplicon>ATTCCAGGGATAGTAGTTTGATTGCAAGGCGTGCCTGAAAAATGTGATTTGAGAAAAATGGAAAGTCGAATTGAAATGACTGAAATTTATGTTTCGGCCTAATCACTAAACTTTACCGCTATTCACAAATCACTTCCGACTTTAAAAAATTTAATTTAYCAAAAATTTCCGATTGCTGGACGCCGAAGCATCCAGAATCATCAATTTTGCCATTAAAGGATAGTTCAAGATAGTCACAAAAGAAAATGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24152</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>32910</contig_pos>
        <strand></strand>
        <context>AATTTCCGAT[T/C]GCTGGACGCC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CACAAATCACTTCCGACTTTAAAAAATTTAATTTACCAAAAATTTCCGAT</left_flank>
        <right_flank>GCTGGACGCCGAAGCATCCAGAATCATCAATTTTGCCATTAAAGGATAGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACACATTTTTAAACCTTATTGAGTTCTTTTACCAGAAGCTTCAAAATTGAACCGAGTCATAACTTTCTAGATTAACTCACTCGAGAAGTCCAGATTCCAAGTACCACACCACTGTCCAGAACTTGTTTTCTTCATCATCTGACTCCCGTAGCACAAATAGTAGTGCTTTTCTGACTTGCCGAAGTTCAGAGATTTCCAAATTTCCACGACTAGCTTTCTGATTTTGATAAACTTCTTTCATAAAGTCAGACGCCATATCAATATGATCTGTCAAAACTAAAAATTCAAGACATTCCGACAATGAAGATGCATTGATCATTTTGATTCCAGGGATAGTAGTTTGATTGCAAGGCGTGCCTGAAAAATGTGATTTGAGAAAAATGGAAAGTCGAATTGAAATGACTGAAATTTATGTTTCGGCCTAATCACTAAACTTTACCGCTATTCACAAATCACTTCCGACTTTAAAAAATTTAATTTACCAAAAATTTCCGATTGCTGGACGCCGAAGCATCCAGAATCATCAATTTTGCCATTAAAGGATAGTTCAAGATAGTCACAAAAGAAAATGGAGGCCCGACATCAAATGGTTATTTCAACTATTCTCCACAATCAAAAATTTACAATACAATTCTTTAAAAACTTACAAATCGCGGCAATGGTTCTCAGTGATGGATGATTCTTGGCGAATGTTCTCAATTGATGCTCAGTGACAGATGTCCATGAGCAGTCCAAAAACTCCAGAGCTTCCAATCTAACTTCAGCTGCCAACAGATTTTTAATAGAATTTGTGTCAATTTGTGCGGTGGCGACGGTACCCGAAATATCCAAATATTTGAGACTCTTCAAATCCGATAATTCTTTGTATCCATTGATATCATCAAAGTATACGTAGGACATTGAGAGTTTTTGTAGATTTTTGATGTTTCCGATTCCTTGAAGACTCGGTAGGTAATAGGCAAACGAAATGTTGAGAGCAAGAAGATGAGAGAAGGAA</canonical>
            <polymorphic>AAAACACATTTTTAAACCTTATTGAGTTCTTTTACCAGAAGCTTCAAAATTGAACCGAGTCATAACTTTCTAGATTAACTCACTCGAGAAGTCCAGATTCCAAGTACCACACCACTGTCCAGAACTTGTTTTCTTCATCATCTGACTCCCGTAGCACAAATAGTAGTGCTTTTCTGACTTGCCGAAGTTCAGAGATTTCCAAATTTCCACGACTAGCTTTCTGATTTTGATAAACTTCTTTCATAAAGTCAGACGCCATATCAATATGATCTGTCAAAACTAAAAATTCAAGACATTCCGACAATGAAGATGCATTGATCATTTTGATTCCAGGGATAGTAGTTTGATTGCAAGGCGTGCCTGAAAAATGTGATTTGAGAAAAATGGAAAGTCGAATTGAAATGACTGAAATTTATGTTTCGGCCTAATCACTAAACTTTACCGCTATTCACAAATCACTTCCGACTTTAAAAAATTTAATTTACCAAAAATTTCCGATYGCTGGACGCCGAAGCATCCAGAATCATCAATTTTGCCATTAAAGGATAGTTCAAGATAGTCACAAAAGAAAATGGAGGCCCGACATCAAATGGTTATTTCAACTATTCTCCACAATCAAAAATTTACAATACAATTCTTTAAAAACTTACAAATCGCGGCAATGGTTCTCAGTGATGGATGATTCTTGGCGAATGTTCTCAATTGATGCTCAGTGACAGATGTCCATGAGCAGTCCAAAAACTCCAGAGCTTCCAATCTAACTTCAGCTGCCAACAGATTTTTAATAGAATTTGTGTCAATTTGTGCGGTGGCGACGGTACCCGAAATATCCAAATATTTGAGACTCTTCAAATCCGATAATTCTTTGTATCCATTGATATCATCAAAGTATACGTAGGACATTGAGAGTTTTTGTAGATTTTTGATGTTTCCGATTCCTTGAAGACTCGGTAGGTAATAGGCAAACGAAATGTTGAGAGCAAGAAGATGAGAGAAGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCAGGGATAGTAGTTTGATT</pcr_primer_p1>
		<pcr_primer_p2>TCCATTTTCTTTTGTGACTATCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCCAGGGATAGTAGTTTGATTGCAAGGCGTGCCTGAAAAATGTGATTTGAGAAAAATGGAAAGTCGAATTGAAATGACTGAAATTTATGTTTCGGCCTAATCACTAAACTTTACCGCTATTCACAAATCACTTCCGACTTTAAAAAATTTAATTTACCAAAAATTTCCGATTGCTGGACGCCGAAGCATCCAGAATCATCAATTTTGCCATTAAAGGATAGTTCAAGATAGTCACAAAAGAAAATGGA</canonical_amplicon>
		<polymorphic_amplicon>ATTCCAGGGATAGTAGTTTGATTGCAAGGCGTGCCTGAAAAATGTGATTTGAGAAAAATGGAAAGTCGAATTGAAATGACTGAAATTTATGTTTCGGCCTAATCACTAAACTTTACCGCTATTCACAAATCACTTCCGACTTTAAAAAATTTAATTTACCAAAAATTTCCGATYGCTGGACGCCGAAGCATCCAGAATCATCAATTTTGCCATTAAAGGATAGTTCAAGATAGTCACAAAAGAAAATGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24153</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>32941</contig_pos>
        <strand>+</strand>
        <context>GAATCATCAA[C/T]TTTGCCATTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTACCAAAAATTTCCGATTGCTGGACGCCGAAGCATCCAGAATCATCAA</left_flank>
        <right_flank>TTTGCCATTAAAGGATAGTTCAAGATAGTCACAAAAGAAAATGGAGGCCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACCAGAAGCTTCAAAATTGAACCGAGTCATAACTTTCTAGATTAACTCACTCGAGAAGTCCAGATTCCAAGTACCACACCACTGTCCAGAACTTGTTTTCTTCATCATCTGACTCCCGTAGCACAAATAGTAGTGCTTTTCTGACTTGCCGAAGTTCAGAGATTTCCAAATTTCCACGACTAGCTTTCTGATTTTGATAAACTTCTTTCATAAAGTCAGACGCCATATCAATATGATCTGTCAAAACTAAAAATTCAAGACATTCCGACAATGAAGATGCATTGATCATTTTGATTCCAGGGATAGTAGTTTGATTGCAAGGCGTGCCTGAAAAATGTGATTTGAGAAAAATGGAAAGTCGAATTGAAATGACTGAAATTTATGTTTCGGCCTAATCACTAAACTTTACCGCTATTCACAAATCACTTCCGACTTTAAAAAATTTAATTTACCAAAAATTTCCGATTGCTGGACGCCGAAGCATCCAGAATCATCAATTTTGCCATTAAAGGATAGTTCAAGATAGTCACAAAAGAAAATGGAGGCCCGACATCAAATGGTTATTTCAACTATTCTCCACAATCAAAAATTTACAATACAATTCTTTAAAAACTTACAAATCGCGGCAATGGTTCTCAGTGATGGATGATTCTTGGCGAATGTTCTCAATTGATGCTCAGTGACAGATGTCCATGAGCAGTCCAAAAACTCCAGAGCTTCCAATCTAACTTCAGCTGCCAACAGATTTTTAATAGAATTTGTGTCAATTTGTGCGGTGGCGACGGTACCCGAAATATCCAAATATTTGAGACTCTTCAAATCCGATAATTCTTTGTATCCATTGATATCATCAAAGTATACGTAGGACATTGAGAGTTTTTGTAGATTTTTGATGTTTCCGATTCCTTGAAGACTCGGTAGGTAATAGGCAAACGAAATGTTGAGAGCAAGAAGATGAGAGAAGGAAGTGCAGAAGTTTGAAAGCTGGAATCGATCAT</canonical>
            <polymorphic>TTACCAGAAGCTTCAAAATTGAACCGAGTCATAACTTTCTAGATTAACTCACTCGAGAAGTCCAGATTCCAAGTACCACACCACTGTCCAGAACTTGTTTTCTTCATCATCTGACTCCCGTAGCACAAATAGTAGTGCTTTTCTGACTTGCCGAAGTTCAGAGATTTCCAAATTTCCACGACTAGCTTTCTGATTTTGATAAACTTCTTTCATAAAGTCAGACGCCATATCAATATGATCTGTCAAAACTAAAAATTCAAGACATTCCGACAATGAAGATGCATTGATCATTTTGATTCCAGGGATAGTAGTTTGATTGCAAGGCGTGCCTGAAAAATGTGATTTGAGAAAAATGGAAAGTCGAATTGAAATGACTGAAATTTATGTTTCGGCCTAATCACTAAACTTTACCGCTATTCACAAATCACTTCCGACTTTAAAAAATTTAATTTACCAAAAATTTCCGATTGCTGGACGCCGAAGCATCCAGAATCATCAAYTTTGCCATTAAAGGATAGTTCAAGATAGTCACAAAAGAAAATGGAGGCCCGACATCAAATGGTTATTTCAACTATTCTCCACAATCAAAAATTTACAATACAATTCTTTAAAAACTTACAAATCGCGGCAATGGTTCTCAGTGATGGATGATTCTTGGCGAATGTTCTCAATTGATGCTCAGTGACAGATGTCCATGAGCAGTCCAAAAACTCCAGAGCTTCCAATCTAACTTCAGCTGCCAACAGATTTTTAATAGAATTTGTGTCAATTTGTGCGGTGGCGACGGTACCCGAAATATCCAAATATTTGAGACTCTTCAAATCCGATAATTCTTTGTATCCATTGATATCATCAAAGTATACGTAGGACATTGAGAGTTTTTGTAGATTTTTGATGTTTCCGATTCCTTGAAGACTCGGTAGGTAATAGGCAAACGAAATGTTGAGAGCAAGAAGATGAGAGAAGGAAGTGCAGAAGTTTGAAAGCTGGAATCGATCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>172 154 110 92 88 83 68 64 61 39 16 15 12 11 10 5</canonical_bands>
                <polymorphic_bands>172 154 131 110 88 83 68 64 61 16 15 12 11 10 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGTGATTTGAGAAAAATG</pcr_primer_p1>
		<pcr_primer_p2>TGTGGAGAATAGTTGAAATAACC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGTGATTTGAGAAAAATGGAAAGTCGAATTGAAATGACTGAAATTTATGTTTCGGCCTAATCACTAAACTTTACCGCTATTCACAAATCACTTCCGACTTTAAAAAATTTAATTTACCAAAAATTTCCGATTGCTGGACGCCGAAGCATCCAGAATCATCAATTTTGCCATTAAAGGATAGTTCAAGATAGTCACAAAAGAAAATGGAGGCCCGACATCAAATGGTTATTTCAACTATTCTCCACA</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGTGATTTGAGAAAAATGGAAAGTCGAATTGAAATGACTGAAATTTATGTTTCGGCCTAATCACTAAACTTTACCGCTATTCACAAATCACTTCCGACTTTAAAAAATTTAATTTACCAAAAATTTCCGATTGCTGGACGCCGAAGCATCCAGAATCATCAAYTTTGCCATTAAAGGATAGTTCAAGATAGTCACAAAAGAAAATGGAGGCCCGACATCAAATGGTTATTTCAACTATTCTCCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24154</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>33078</contig_pos>
        <strand>+</strand>
        <context>GGCAATGGTT[C/T]TCAGTGATGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATTTACAATACAATTCTTTAAAAACTTACAAATCGCGGCAATGGTT</left_flank>
        <right_flank>TCAGTGATGGATGATTCTTGGCGAATGTTCTCAATTGATGCTCAGTGACA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTCTGACTTGCCGAAGTTCAGAGATTTCCAAATTTCCACGACTAGCTTTCTGATTTTGATAAACTTCTTTCATAAAGTCAGACGCCATATCAATATGATCTGTCAAAACTAAAAATTCAAGACATTCCGACAATGAAGATGCATTGATCATTTTGATTCCAGGGATAGTAGTTTGATTGCAAGGCGTGCCTGAAAAATGTGATTTGAGAAAAATGGAAAGTCGAATTGAAATGACTGAAATTTATGTTTCGGCCTAATCACTAAACTTTACCGCTATTCACAAATCACTTCCGACTTTAAAAAATTTAATTTACCAAAAATTTCCGATTGCTGGACGCCGAAGCATCCAGAATCATCAATTTTGCCATTAAAGGATAGTTCAAGATAGTCACAAAAGAAAATGGAGGCCCGACATCAAATGGTTATTTCAACTATTCTCCACAATCAAAAATTTACAATACAATTCTTTAAAAACTTACAAATCGCGGCAATGGTTCTCAGTGATGGATGATTCTTGGCGAATGTTCTCAATTGATGCTCAGTGACAGATGTCCATGAGCAGTCCAAAAACTCCAGAGCTTCCAATCTAACTTCAGCTGCCAACAGATTTTTAATAGAATTTGTGTCAATTTGTGCGGTGGCGACGGTACCCGAAATATCCAAATATTTGAGACTCTTCAAATCCGATAATTCTTTGTATCCATTGATATCATCAAAGTATACGTAGGACATTGAGAGTTTTTGTAGATTTTTGATGTTTCCGATTCCTTGAAGACTCGGTAGGTAATAGGCAAACGAAATGTTGAGAGCAAGAAGATGAGAGAAGGAAGTGCAGAAGTTTGAAAGCTGGAATCGATCATTGAATATCGCAGAGCTGATATTCATGCTTTGAAGGTTAGGCAGGATCTTGGAAACCTGAGAAAAAAATTTAAAAATTCAGATCTAACTGAAAACAAGCTCTTTACCCTTTTCTCCCAACCTCCAATGAATTCCTGCC</canonical>
            <polymorphic>CTTTTCTGACTTGCCGAAGTTCAGAGATTTCCAAATTTCCACGACTAGCTTTCTGATTTTGATAAACTTCTTTCATAAAGTCAGACGCCATATCAATATGATCTGTCAAAACTAAAAATTCAAGACATTCCGACAATGAAGATGCATTGATCATTTTGATTCCAGGGATAGTAGTTTGATTGCAAGGCGTGCCTGAAAAATGTGATTTGAGAAAAATGGAAAGTCGAATTGAAATGACTGAAATTTATGTTTCGGCCTAATCACTAAACTTTACCGCTATTCACAAATCACTTCCGACTTTAAAAAATTTAATTTACCAAAAATTTCCGATTGCTGGACGCCGAAGCATCCAGAATCATCAATTTTGCCATTAAAGGATAGTTCAAGATAGTCACAAAAGAAAATGGAGGCCCGACATCAAATGGTTATTTCAACTATTCTCCACAATCAAAAATTTACAATACAATTCTTTAAAAACTTACAAATCGCGGCAATGGTTYTCAGTGATGGATGATTCTTGGCGAATGTTCTCAATTGATGCTCAGTGACAGATGTCCATGAGCAGTCCAAAAACTCCAGAGCTTCCAATCTAACTTCAGCTGCCAACAGATTTTTAATAGAATTTGTGTCAATTTGTGCGGTGGCGACGGTACCCGAAATATCCAAATATTTGAGACTCTTCAAATCCGATAATTCTTTGTATCCATTGATATCATCAAAGTATACGTAGGACATTGAGAGTTTTTGTAGATTTTTGATGTTTCCGATTCCTTGAAGACTCGGTAGGTAATAGGCAAACGAAATGTTGAGAGCAAGAAGATGAGAGAAGGAAGTGCAGAAGTTTGAAAGCTGGAATCGATCATTGAATATCGCAGAGCTGATATTCATGCTTTGAAGGTTAGGCAGGATCTTGGAAACCTGAGAAAAAAATTTAAAAATTCAGATCTAACTGAAAACAAGCTCTTTACCCTTTTCTCCCAACCTCCAATGAATTCCTGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 378 81 41</canonical_bands>
                <polymorphic_bands>541 378 81</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCACAATCAAAAATTTACAATAC</pcr_primer_p1>
		<pcr_primer_p2>AGAATTATCGGATTTGAAGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TCCACAATCAAAAATTTACAATACAATTCTTTAAAAACTTACAAATCGCGGCAATGGTTCTCAGTGATGGATGATTCTTGGCGAATGTTCTCAATTGATGCTCAGTGACAGATGTCCATGAGCAGTCCAAAAACTCCAGAGCTTCCAATCTAACTTCAGCTGCCAACAGATTTTTAATAGAATTTGTGTCAATTTGTGCGGTGGCGACGGTACCCGAAATATCCAAATATTTGAGACTCTTCAAATCCGATAATTCT</canonical_amplicon>
		<polymorphic_amplicon>TCCACAATCAAAAATTTACAATACAATTCTTTAAAAACTTACAAATCGCGGCAATGGTTYTCAGTGATGGATGATTCTTGGCGAATGTTCTCAATTGATGCTCAGTGACAGATGTCCATGAGCAGTCCAAAAACTCCAGAGCTTCCAATCTAACTTCAGCTGCCAACAGATTTTTAATAGAATTTGTGTCAATTTGTGCGGTGGCGACGGTACCCGAAATATCCAAATATTTGAGACTCTTCAAATCCGATAATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24155</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>33115</contig_pos>
        <strand>+</strand>
        <context>GTTCTCAATT[C/G]ATGCTCAKTG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGCGGCAATGGTTCTCAGTGATGGATGATTCTTGGCGAATGTTCTCAATT</left_flank>
        <right_flank>ATGCTCAGTGACAGATGTCCATGAGCAGTCCAAAAACTCCAGAGCTTCCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCACGACTAGCTTTCTGATTTTGATAAACTTCTTTCATAAAGTCAGACGCCATATCAATATGATCTGTCAAAACTAAAAATTCAAGACATTCCGACAATGAAGATGCATTGATCATTTTGATTCCAGGGATAGTAGTTTGATTGCAAGGCGTGCCTGAAAAATGTGATTTGAGAAAAATGGAAAGTCGAATTGAAATGACTGAAATTTATGTTTCGGCCTAATCACTAAACTTTACCGCTATTCACAAATCACTTCCGACTTTAAAAAATTTAATTTACCAAAAATTTCCGATTGCTGGACGCCGAAGCATCCAGAATCATCAATTTTGCCATTAAAGGATAGTTCAAGATAGTCACAAAAGAAAATGGAGGCCCGACATCAAATGGTTATTTCAACTATTCTCCACAATCAAAAATTTACAATACAATTCTTTAAAAACTTACAAATCGCGGCAATGGTTCTCAGTGATGGATGATTCTTGGCGAATGTTCTCAATTGATGCTCAGTGACAGATGTCCATGAGCAGTCCAAAAACTCCAGAGCTTCCAATCTAACTTCAGCTGCCAACAGATTTTTAATAGAATTTGTGTCAATTTGTGCGGTGGCGACGGTACCCGAAATATCCAAATATTTGAGACTCTTCAAATCCGATAATTCTTTGTATCCATTGATATCATCAAAGTATACGTAGGACATTGAGAGTTTTTGTAGATTTTTGATGTTTCCGATTCCTTGAAGACTCGGTAGGTAATAGGCAAACGAAATGTTGAGAGCAAGAAGATGAGAGAAGGAAGTGCAGAAGTTTGAAAGCTGGAATCGATCATTGAATATCGCAGAGCTGATATTCATGCTTTGAAGGTTAGGCAGGATCTTGGAAACCTGAGAAAAAAATTTAAAAATTCAGATCTAACTGAAAACAAGCTCTTTACCCTTTTCTCCCAACCTCCAATGAATTCCTGCCACGGCAACCCCAAATGGATCAGTGAACTCCGCGAACC</canonical>
            <polymorphic>TCCACGACTAGCTTTCTGATTTTGATAAACTTCTTTCATAAAGTCAGACGCCATATCAATATGATCTGTCAAAACTAAAAATTCAAGACATTCCGACAATGAAGATGCATTGATCATTTTGATTCCAGGGATAGTAGTTTGATTGCAAGGCGTGCCTGAAAAATGTGATTTGAGAAAAATGGAAAGTCGAATTGAAATGACTGAAATTTATGTTTCGGCCTAATCACTAAACTTTACCGCTATTCACAAATCACTTCCGACTTTAAAAAATTTAATTTACCAAAAATTTCCGATTGCTGGACGCCGAAGCATCCAGAATCATCAATTTTGCCATTAAAGGATAGTTCAAGATAGTCACAAAAGAAAATGGAGGCCCGACATCAAATGGTTATTTCAACTATTCTCCACAATCAAAAATTTACAATACAATTCTTTAAAAACTTACAAATCGCGGCAATGGTTCTCAGTGATGGATGATTCTTGGCGAATGTTCTCAATTSATGCTCAGTGACAGATGTCCATGAGCAGTCCAAAAACTCCAGAGCTTCCAATCTAACTTCAGCTGCCAACAGATTTTTAATAGAATTTGTGTCAATTTGTGCGGTGGCGACGGTACCCGAAATATCCAAATATTTGAGACTCTTCAAATCCGATAATTCTTTGTATCCATTGATATCATCAAAGTATACGTAGGACATTGAGAGTTTTTGTAGATTTTTGATGTTTCCGATTCCTTGAAGACTCGGTAGGTAATAGGCAAACGAAATGTTGAGAGCAAGAAGATGAGAGAAGGAAGTGCAGAAGTTTGAAAGCTGGAATCGATCATTGAATATCGCAGAGCTGATATTCATGCTTTGAAGGTTAGGCAGGATCTTGGAAACCTGAGAAAAAAATTTAAAAATTCAGATCTAACTGAAAACAAGCTCTTTACCCTTTTCTCCCAACCTCCAATGAATTCCTGCCACGGCAACCCCAAATGGATCAGTGAACTCCGCGAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCACAATCAAAAATTTACAATAC</pcr_primer_p1>
		<pcr_primer_p2>AGAATTATCGGATTTGAAGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TCCACAATCAAAAATTTACAATACAATTCTTTAAAAACTTACAAATCGCGGCAATGGTTCTCAGTGATGGATGATTCTTGGCGAATGTTCTCAATTGATGCTCAGTGACAGATGTCCATGAGCAGTCCAAAAACTCCAGAGCTTCCAATCTAACTTCAGCTGCCAACAGATTTTTAATAGAATTTGTGTCAATTTGTGCGGTGGCGACGGTACCCGAAATATCCAAATATTTGAGACTCTTCAAATCCGATAATTCT</canonical_amplicon>
		<polymorphic_amplicon>TCCACAATCAAAAATTTACAATACAATTCTTTAAAAACTTACAAATCGCGGCAATGGTTCTCAGTGATGGATGATTCTTGGCGAATGTTCTCAATTSATGCTCAGTGACAGATGTCCATGAGCAGTCCAAAAACTCCAGAGCTTCCAATCTAACTTCAGCTGCCAACAGATTTTTAATAGAATTTGTGTCAATTTGTGCGGTGGCGACGGTACCCGAAATATCCAAATATTTGAGACTCTTCAAATCCGATAATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24156</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>33123</contig_pos>
        <strand>+</strand>
        <context>TTSATGCTCA[G/T]TGACAGATGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGGTTCTCAGTGATGGATGATTCTTGGCGAATGTTCTCAATTGATGCTCA</left_flank>
        <right_flank>TGACAGATGTCCATGAGCAGTCCAAAAACTCCAGAGCTTCCAATCTAACT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGCTTTCTGATTTTGATAAACTTCTTTCATAAAGTCAGACGCCATATCAATATGATCTGTCAAAACTAAAAATTCAAGACATTCCGACAATGAAGATGCATTGATCATTTTGATTCCAGGGATAGTAGTTTGATTGCAAGGCGTGCCTGAAAAATGTGATTTGAGAAAAATGGAAAGTCGAATTGAAATGACTGAAATTTATGTTTCGGCCTAATCACTAAACTTTACCGCTATTCACAAATCACTTCCGACTTTAAAAAATTTAATTTACCAAAAATTTCCGATTGCTGGACGCCGAAGCATCCAGAATCATCAATTTTGCCATTAAAGGATAGTTCAAGATAGTCACAAAAGAAAATGGAGGCCCGACATCAAATGGTTATTTCAACTATTCTCCACAATCAAAAATTTACAATACAATTCTTTAAAAACTTACAAATCGCGGCAATGGTTCTCAGTGATGGATGATTCTTGGCGAATGTTCTCAATTGATGCTCAGTGACAGATGTCCATGAGCAGTCCAAAAACTCCAGAGCTTCCAATCTAACTTCAGCTGCCAACAGATTTTTAATAGAATTTGTGTCAATTTGTGCGGTGGCGACGGTACCCGAAATATCCAAATATTTGAGACTCTTCAAATCCGATAATTCTTTGTATCCATTGATATCATCAAAGTATACGTAGGACATTGAGAGTTTTTGTAGATTTTTGATGTTTCCGATTCCTTGAAGACTCGGTAGGTAATAGGCAAACGAAATGTTGAGAGCAAGAAGATGAGAGAAGGAAGTGCAGAAGTTTGAAAGCTGGAATCGATCATTGAATATCGCAGAGCTGATATTCATGCTTTGAAGGTTAGGCAGGATCTTGGAAACCTGAGAAAAAAATTTAAAAATTCAGATCTAACTGAAAACAAGCTCTTTACCCTTTTCTCCCAACCTCCAATGAATTCCTGCCACGGCAACCCCAAATGGATCAGTGAACTCCGCGAACCATTGCTCA</canonical>
            <polymorphic>TAGCTTTCTGATTTTGATAAACTTCTTTCATAAAGTCAGACGCCATATCAATATGATCTGTCAAAACTAAAAATTCAAGACATTCCGACAATGAAGATGCATTGATCATTTTGATTCCAGGGATAGTAGTTTGATTGCAAGGCGTGCCTGAAAAATGTGATTTGAGAAAAATGGAAAGTCGAATTGAAATGACTGAAATTTATGTTTCGGCCTAATCACTAAACTTTACCGCTATTCACAAATCACTTCCGACTTTAAAAAATTTAATTTACCAAAAATTTCCGATTGCTGGACGCCGAAGCATCCAGAATCATCAATTTTGCCATTAAAGGATAGTTCAAGATAGTCACAAAAGAAAATGGAGGCCCGACATCAAATGGTTATTTCAACTATTCTCCACAATCAAAAATTTACAATACAATTCTTTAAAAACTTACAAATCGCGGCAATGGTTCTCAGTGATGGATGATTCTTGGCGAATGTTCTCAATTGATGCTCAKTGACAGATGTCCATGAGCAGTCCAAAAACTCCAGAGCTTCCAATCTAACTTCAGCTGCCAACAGATTTTTAATAGAATTTGTGTCAATTTGTGCGGTGGCGACGGTACCCGAAATATCCAAATATTTGAGACTCTTCAAATCCGATAATTCTTTGTATCCATTGATATCATCAAAGTATACGTAGGACATTGAGAGTTTTTGTAGATTTTTGATGTTTCCGATTCCTTGAAGACTCGGTAGGTAATAGGCAAACGAAATGTTGAGAGCAAGAAGATGAGAGAAGGAAGTGCAGAAGTTTGAAAGCTGGAATCGATCATTGAATATCGCAGAGCTGATATTCATGCTTTGAAGGTTAGGCAGGATCTTGGAAACCTGAGAAAAAAATTTAAAAATTCAGATCTAACTGAAAACAAGCTCTTTACCCTTTTCTCCCAACCTCCAATGAATTCCTGCCACGGCAACCCCAAATGGATCAGTGAACTCCGCGAACCATTGCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>455 378 126 41</canonical_bands>
                <polymorphic_bands>455 419 126</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>192 166 146 104 81 62 59 50 41 23 21 20 13 10 7 5</canonical_bands>
                <polymorphic_bands>192 166 146 122 104 62 59 50 23 21 20 13 10 7 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 345 154</canonical_bands>
                <polymorphic_bands>655 345</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>501 345 154</canonical_bands>
                <polymorphic_bands>655 345</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCACAATCAAAAATTTACAATAC</pcr_primer_p1>
		<pcr_primer_p2>AGAATTATCGGATTTGAAGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TCCACAATCAAAAATTTACAATACAATTCTTTAAAAACTTACAAATCGCGGCAATGGTTCTCAGTGATGGATGATTCTTGGCGAATGTTCTCAATTGATGCTCAGTGACAGATGTCCATGAGCAGTCCAAAAACTCCAGAGCTTCCAATCTAACTTCAGCTGCCAACAGATTTTTAATAGAATTTGTGTCAATTTGTGCGGTGGCGACGGTACCCGAAATATCCAAATATTTGAGACTCTTCAAATCCGATAATTCT</canonical_amplicon>
		<polymorphic_amplicon>TCCACAATCAAAAATTTACAATACAATTCTTTAAAAACTTACAAATCGCGGCAATGGTTCTCAGTGATGGATGATTCTTGGCGAATGTTCTCAATTGATGCTCAKTGACAGATGTCCATGAGCAGTCCAAAAACTCCAGAGCTTCCAATCTAACTTCAGCTGCCAACAGATTTTTAATAGAATTTGTGTCAATTTGTGCGGTGGCGACGGTACCCGAAATATCCAAATATTTGAGACTCTTCAAATCCGATAATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24157</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>40991</contig_pos>
        <strand></strand>
        <context>TGAGAATCCC[C/T]ATGATTTAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCTAAGATTTCAAAAGGAAATTAACTTCTGCTAATTTCTGAGAATCCC</left_flank>
        <right_flank>ATGATTTAGAAAAGTGTTCTGGAGAAAAGAAGGTCAGTATTTGCCTATTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGCTTGGTTTTCTCGTCAACTATATGGCTCCAGGAATATTGATACCCGATAGAGTGCTGAAATTTGTTATTGAGAAGACTGTGGAATTGGTTGACGAATTTCAGGATTATAAACCTCAAGGATCTCAAACTATCTCTAAAGCTGAGAAATTCATGGGTCGTGACCAACTTCAGAAAATAATTGGAAATTCGGAGTTGATGAGAAAAGTTCAAGAGTTGCTAAATATTGCCTGATTTTTTTGCTCTAATTTGTTTCCGTTATTTATTGTCATTTTTAAGATCAATTCATCAGATAAATCTTTGTATAAAAGTTTCATACATATATTAATTCAAGGATGTTTCACTGTTAAAAAACTCAAGGACTCTCAAAATTTGAAAATCCACAACTTCTGGAACTAAAATAAAAAGGATGATGACTTTTGAATTACAAGAAACTAGAAACTACTCAATTCCTAAGATTTCAAAAGGAAATTAACTTCTGCTAATTTCTGAGAATCCCCATGATTTAGAAAAGTGTTCTGGAGAAAAGAAGGTCAGTATTTGCCTATTATTCTTCAAAAATCCTTGCTTCATCCGCACCAGCCAGACGTTTGAAATGCCGGTGGCGTGGCAAACAGGCTGCTAAAAACAGAAACCGATCCGGAGGCCAGGAACACGGAGAATATATGTAATTGAGAGACATCGGCAGTCGGGGTGATTGGAATATAGTTTTTGCTGGCAAAGATAGCATTTTCTTTTAGCTGCCAAAGCTTGAAAACAACTTTTTCGAGACACTGTATCCACCGAAAAAAGCCGCAGAGCGAGAAATAACGGATCAACAAAAAAAGACGCATGAAAATGAAGCGCAAGATGTGTGCTTCCCTGTTCAGTTACAGTGCAACCGTTTGACATGTTAATGAATTTTGTCTTCTTGATATATCAAACAAAGAAGTGGTAATAGTAACAGCTCTGGCCGTCCAAGGAACAAATAAGGGTACGGGTTCGGTGATTGAGAAAAAAC</canonical>
            <polymorphic>ATGCTTGGTTTTCTCGTCAACTATATGGCTCCAGGAATATTGATACCCGATAGAGTGCTGAAATTTGTTATTGAGAAGACTGTGGAATTGGTTGACGAATTTCAGGATTATAAACCTCAAGGATCTCAAACTATCTCTAAAGCTGAGAAATTCATGGGTCGTGACCAACTTCAGAAAATAATTGGAAATTCGGAGTTGATGAGAAAAGTTCAAGAGTTGCTAAATATTGCCTGATTTTTTTGCTCTAATTTGTTTCCGTTATTTATTGTCATTTTTAAGATCAATTCATCAGATAAATCTTTGTATAAAAGTTTCATACATATATTAATTCAAGGATGTTTCACTGTTAAAAAACTCAAGGACTCTCAAAATTTGAAAATCCACAACTTCTGGAACTAAAATAAAAAGGATGATGACTTTTGAATTACAAGAAACTAGAAACTACTCAATTCCTAAGATTTCAAAAGGAAATTAACTTCTGCTAATTTCTGAGAATCCCYATGATTTAGAAAAGTGTTCTGGAGAAAAGAAGGTCAGTATTTGCCTATTATTCTTCAAAAATCCTTGCTTCATCCGCACCAGCCAGACGTTTGAAATGCCGGTGGCGTGGCAAACAGGCTGCTAAAAACAGAAACCGATCCGGAGGCCAGGAACACGGAGAATATATGTAATTGAGAGACATCGGCAGTCGGGGTGATTGGAATATAGTTTTTGCTGGCAAAGATAGCATTTTCTTTTAGCTGCCAAAGCTTGAAAACAACTTTTTCGAGACACTGTATCCACCGAAAAAAGCCGCAGAGCGAGAAATAACGGATCAACAAAAAAAGACGCATGAAAATGAAGCGCAAGATGTGTGCTTCCCTGTTCAGTTACAGTGCAACCGTTTGACATGTTAATGAATTTTGTCTTCTTGATATATCAAACAAAGAAGTGGTAATAGTAACAGCTCTGGCCGTCCAAGGAACAAATAAGGGTACGGGTTCGGTGATTGAGAAAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>347 331 153 111 58</canonical_bands>
                <polymorphic_bands>678 153 111 58</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTAATTCAAGGATGTTTCACTG</pcr_primer_p1>
		<pcr_primer_p2>GCAAGGATTTTTGAAGAATAATA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATTAATTCAAGGATGTTTCACTGTTAAAAAACTCAAGGACTCTCAAAATTTGAAAATCCACAACTTCTGGAACTAAAATAAAAAGGATGATGACTTTTGAATTACAAGAAACTAGAAACTACTCAATTCCTAAGATTTCAAAAGGAAATTAACTTCTGCTAATTTCTGAGAATCCCCATGATTTAGAAAAGTGTTCTGGAGAAAAGAAGGTCAGTATTTGCCTATTATTCTTCAAAAATCCTTGC</canonical_amplicon>
		<polymorphic_amplicon>ATTAATTCAAGGATGTTTCACTGTTAAAAAACTCAAGGACTCTCAAAATTTGAAAATCCACAACTTCTGGAACTAAAATAAAAAGGATGATGACTTTTGAATTACAAGAAACTAGAAACTACTCAATTCCTAAGATTTCAAAAGGAAATTAACTTCTGCTAATTTCTGAGAATCCCYATGATTTAGAAAAGTGTTCTGGAGAAAAGAAGGTCAGTATTTGCCTATTATTCTTCAAAAATCCTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24158</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>41148</contig_pos>
        <strand></strand>
        <context>CCAGGAACAC[G/T]GAGAATATAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGGCAAACAGGCTGCTAAAAACAGAAACCGATCCGGAGGCCAGGAACAC</left_flank>
        <right_flank>GAGAATATATGTAATTGAGAGACATCGGCAGTCGGGGTGATTGGAATATA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCGTGACCAACTTCAGAAAATAATTGGAAATTCGGAGTTGATGAGAAAAGTTCAAGAGTTGCTAAATATTGCCTGATTTTTTTGCTCTAATTTGTTTCCGTTATTTATTGTCATTTTTAAGATCAATTCATCAGATAAATCTTTGTATAAAAGTTTCATACATATATTAATTCAAGGATGTTTCACTGTTAAAAAACTCAAGGACTCTCAAAATTTGAAAATCCACAACTTCTGGAACTAAAATAAAAAGGATGATGACTTTTGAATTACAAGAAACTAGAAACTACTCAATTCCTAAGATTTCAAAAGGAAATTAACTTCTGCTAATTTCTGAGAATCCCCATGATTTAGAAAAGTGTTCTGGAGAAAAGAAGGTCAGTATTTGCCTATTATTCTTCAAAAATCCTTGCTTCATCCGCACCAGCCAGACGTTTGAAATGCCGGTGGCGTGGCAAACAGGCTGCTAAAAACAGAAACCGATCCGGAGGCCAGGAACACGGAGAATATATGTAATTGAGAGACATCGGCAGTCGGGGTGATTGGAATATAGTTTTTGCTGGCAAAGATAGCATTTTCTTTTAGCTGCCAAAGCTTGAAAACAACTTTTTCGAGACACTGTATCCACCGAAAAAAGCCGCAGAGCGAGAAATAACGGATCAACAAAAAAAGACGCATGAAAATGAAGCGCAAGATGTGTGCTTCCCTGTTCAGTTACAGTGCAACCGTTTGACATGTTAATGAATTTTGTCTTCTTGATATATCAAACAAAGAAGTGGTAATAGTAACAGCTCTGGCCGTCCAAGGAACAAATAAGGGTACGGGTTCGGTGATTGAGAAAAAACAGGATTACAGCTCCAAATTAATAAGTCCAAATTAAAAAATTAGAAAGTGAGTAAAGAATTAAGTTTTCGCAGGCCATAACTACAAGAGAGCAGATTTCTAAGAAGGAAAAAAATTGATAGAACTGAAGTAAGCGATAAAGGAAGAAGACACGAATTT</canonical>
            <polymorphic>GTCGTGACCAACTTCAGAAAATAATTGGAAATTCGGAGTTGATGAGAAAAGTTCAAGAGTTGCTAAATATTGCCTGATTTTTTTGCTCTAATTTGTTTCCGTTATTTATTGTCATTTTTAAGATCAATTCATCAGATAAATCTTTGTATAAAAGTTTCATACATATATTAATTCAAGGATGTTTCACTGTTAAAAAACTCAAGGACTCTCAAAATTTGAAAATCCACAACTTCTGGAACTAAAATAAAAAGGATGATGACTTTTGAATTACAAGAAACTAGAAACTACTCAATTCCTAAGATTTCAAAAGGAAATTAACTTCTGCTAATTTCTGAGAATCCCCATGATTTAGAAAAGTGTTCTGGAGAAAAGAAGGTCAGTATTTGCCTATTATTCTTCAAAAATCCTTGCTTCATCCGCACCAGCCAGACGTTTGAAATGCCGGTGGCGTGGCAAACAGGCTGCTAAAAACAGAAACCGATCCGGAGGCCAGGAACACKGAGAATATATGTAATTGAGAGACATCGGCAGTCGGGGTGATTGGAATATAGTTTTTGCTGGCAAAGATAGCATTTTCTTTTAGCTGCCAAAGCTTGAAAACAACTTTTTCGAGACACTGTATCCACCGAAAAAAGCCGCAGAGCGAGAAATAACGGATCAACAAAAAAAGACGCATGAAAATGAAGCGCAAGATGTGTGCTTCCCTGTTCAGTTACAGTGCAACCGTTTGACATGTTAATGAATTTTGTCTTCTTGATATATCAAACAAAGAAGTGGTAATAGTAACAGCTCTGGCCGTCCAAGGAACAAATAAGGGTACGGGTTCGGTGATTGAGAAAAAACAGGATTACAGCTCCAAATTAATAAGTCCAAATTAAAAAATTAGAAAGTGAGTAAAGAATTAAGTTTTCGCAGGCCATAACTACAAGAGAGCAGATTTCTAAGAAGGAAAAAAATTGATAGAACTGAAGTAAGCGATAAAGGAAGAAGACACGAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCAGTATTTGCCTATTATTCTT</pcr_primer_p1>
		<pcr_primer_p2>GATACAGTGTCTCGAAAAAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTCAGTATTTGCCTATTATTCTTCAAAAATCCTTGCTTCATCCGCACCAGCCAGACGTTTGAAATGCCGGTGGCGTGGCAAACAGGCTGCTAAAAACAGAAACCGATCCGGAGGCCAGGAACACGGAGAATATATGTAATTGAGAGACATCGGCAGTCGGGGTGATTGGAATATAGTTTTTGCTGGCAAAGATAGCATTTTCTTTTAGCTGCCAAAGCTTGAAAACAACTTTTTCGAGACACTGTATC</canonical_amplicon>
		<polymorphic_amplicon>GGTCAGTATTTGCCTATTATTCTTCAAAAATCCTTGCTTCATCCGCACCAGCCAGACGTTTGAAATGCCGGTGGCGTGGCAAACAGGCTGCTAAAAACAGAAACCGATCCGGAGGCCAGGAACACKGAGAATATATGTAATTGAGAGACATCGGCAGTCGGGGTGATTGGAATATAGTTTTTGCTGGCAAAGATAGCATTTTCTTTTAGCTGCCAAAGCTTGAAAACAACTTTTTCGAGACACTGTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24159</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>41215</contig_pos>
        <strand></strand>
        <context>GCTGGCAAAG[A/T]TAGCATTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGAGACATCGGCAGTCGGGGTGATTGGAATATAGTTTTTGCTGGCAAAG</left_flank>
        <right_flank>TAGCATTTTCTTTTAGCTGCCAAAGCTTGAAAACAACTTTTTCGAGACAC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTGCCTGATTTTTTTGCTCTAATTTGTTTCCGTTATTTATTGTCATTTTTAAGATCAATTCATCAGATAAATCTTTGTATAAAAGTTTCATACATATATTAATTCAAGGATGTTTCACTGTTAAAAAACTCAAGGACTCTCAAAATTTGAAAATCCACAACTTCTGGAACTAAAATAAAAAGGATGATGACTTTTGAATTACAAGAAACTAGAAACTACTCAATTCCTAAGATTTCAAAAGGAAATTAACTTCTGCTAATTTCTGAGAATCCCCATGATTTAGAAAAGTGTTCTGGAGAAAAGAAGGTCAGTATTTGCCTATTATTCTTCAAAAATCCTTGCTTCATCCGCACCAGCCAGACGTTTGAAATGCCGGTGGCGTGGCAAACAGGCTGCTAAAAACAGAAACCGATCCGGAGGCCAGGAACACGGAGAATATATGTAATTGAGAGACATCGGCAGTCGGGGTGATTGGAATATAGTTTTTGCTGGCAAAGATAGCATTTTCTTTTAGCTGCCAAAGCTTGAAAACAACTTTTTCGAGACACTGTATCCACCGAAAAAAGCCGCAGAGCGAGAAATAACGGATCAACAAAAAAAGACGCATGAAAATGAAGCGCAAGATGTGTGCTTCCCTGTTCAGTTACAGTGCAACCGTTTGACATGTTAATGAATTTTGTCTTCTTGATATATCAAACAAAGAAGTGGTAATAGTAACAGCTCTGGCCGTCCAAGGAACAAATAAGGGTACGGGTTCGGTGATTGAGAAAAAACAGGATTACAGCTCCAAATTAATAAGTCCAAATTAAAAAATTAGAAAGTGAGTAAAGAATTAAGTTTTCGCAGGCCATAACTACAAGAGAGCAGATTTCTAAGAAGGAAAAAAATTGATAGAACTGAAGTAAGCGATAAAGGAAGAAGACACGAATTTTAGGAGATGTGTGCGAGAAAAATACAAAAACGGGGTGGTTCGTTCATGAAAAGTTTGTGAATCTAAC</canonical>
            <polymorphic>TATTGCCTGATTTTTTTGCTCTAATTTGTTTCCGTTATTTATTGTCATTTTTAAGATCAATTCATCAGATAAATCTTTGTATAAAAGTTTCATACATATATTAATTCAAGGATGTTTCACTGTTAAAAAACTCAAGGACTCTCAAAATTTGAAAATCCACAACTTCTGGAACTAAAATAAAAAGGATGATGACTTTTGAATTACAAGAAACTAGAAACTACTCAATTCCTAAGATTTCAAAAGGAAATTAACTTCTGCTAATTTCTGAGAATCCCCATGATTTAGAAAAGTGTTCTGGAGAAAAGAAGGTCAGTATTTGCCTATTATTCTTCAAAAATCCTTGCTTCATCCGCACCAGCCAGACGTTTGAAATGCCGGTGGCGTGGCAAACAGGCTGCTAAAAACAGAAACCGATCCGGAGGCCAGGAACACGGAGAATATATGTAATTGAGAGACATCGGCAGTCGGGGTGATTGGAATATAGTTTTTGCTGGCAAAGWTAGCATTTTCTTTTAGCTGCCAAAGCTTGAAAACAACTTTTTCGAGACACTGTATCCACCGAAAAAAGCCGCAGAGCGAGAAATAACGGATCAACAAAAAAAGACGCATGAAAATGAAGCGCAAGATGTGTGCTTCCCTGTTCAGTTACAGTGCAACCGTTTGACATGTTAATGAATTTTGTCTTCTTGATATATCAAACAAAGAAGTGGTAATAGTAACAGCTCTGGCCGTCCAAGGAACAAATAAGGGTACGGGTTCGGTGATTGAGAAAAAACAGGATTACAGCTCCAAATTAATAAGTCCAAATTAAAAAATTAGAAAGTGAGTAAAGAATTAAGTTTTCGCAGGCCATAACTACAAGAGAGCAGATTTCTAAGAAGGAAAAAAATTGATAGAACTGAAGTAAGCGATAAAGGAAGAAGACACGAATTTTAGGAGATGTGTGCGAGAAAAATACAAAAACGGGGTGGTTCGTTCATGAAAAGTTTGTGAATCTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCAGTATTTGCCTATTATTCTT</pcr_primer_p1>
		<pcr_primer_p2>GATACAGTGTCTCGAAAAAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTCAGTATTTGCCTATTATTCTTCAAAAATCCTTGCTTCATCCGCACCAGCCAGACGTTTGAAATGCCGGTGGCGTGGCAAACAGGCTGCTAAAAACAGAAACCGATCCGGAGGCCAGGAACACGGAGAATATATGTAATTGAGAGACATCGGCAGTCGGGGTGATTGGAATATAGTTTTTGCTGGCAAAGATAGCATTTTCTTTTAGCTGCCAAAGCTTGAAAACAACTTTTTCGAGACACTGTATC</canonical_amplicon>
		<polymorphic_amplicon>GGTCAGTATTTGCCTATTATTCTTCAAAAATCCTTGCTTCATCCGCACCAGCCAGACGTTTGAAATGCCGGTGGCGTGGCAAACAGGCTGCTAAAAACAGAAACCGATCCGGAGGCCAGGAACACGGAGAATATATGTAATTGAGAGACATCGGCAGTCGGGGTGATTGGAATATAGTTTTTGCTGGCAAAGWTAGCATTTTCTTTTAGCTGCCAAAGCTTGAAAACAACTTTTTCGAGACACTGTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24162</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>59457</contig_pos>
        <strand>+</strand>
        <context>TCGAGATTCC[A/G]ATGCCTTCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGTGTGCGTAAATTTGAGTAGATCGAATCAAAACTTTTCGAGATTCC</left_flank>
        <right_flank>ATGCCTTCTAAAAAATCAACGGGGGCAAAGTCATCCGTTTTTTTCCTGTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCAGAATCTGAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAACTTCGGAAAATGAGAACTTCGGAAAGTCAGAATCTCTGAATCTGAGAATCTCAGAATCTCAGAATCTCAGAATCTGAGAATCTGAGAATCTGAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAGTCTACTTGACACTTTAGTATCTCATTCTCCCAAATTTAAAATTTAACAAGATCATAAAAAAAACGTCCAAAATAGAACTGAAAAAAATGCTATTAACCTGGCACACCAGGGCAATAATGAAACATGTGTGCATGTTTGCATGTAAATAGATTTTACTGATAAAAATTGCAACAATTCTGTTTCCGTTATCATTTAATGTCATTTTTCACATTTCTACCCTCCCACTTTCTGTGTTTTGTGTGCGTAAATTTGAGTAGATCGAATCAAAACTTTTCGAGATTCCAATGCCTTCTAAAAAATCAACGGGGGCAAAGTCATCCGTTTTTTTCCTGTCCTTGAACCATCTTGGCATGACAGTGATTTATCGGTGCGGTTGGAGATGAAAGGGAAGCGTGCCTCCACCAAGTAAATGTTATGATACGCTATTCTAGACACTGTTGAATAAATTTTACACAGTGCCTAATCAGAGTAGTCATCGAGAATCAATCCATCACTTTGATATTTGATCAAGACACCTTGACAGCGCCATAATTCACGCGCTGGGGCCCGCTGGGGTTTTATGGGCTTTTCTTCTCATCATCAACCAATCTCATCACTATTCTAATCAGAACACAATGTATCGAGTGTTTTGATGAAGATAAATTGCTGAAAGATAATGAGAAAATGTTGTATTAGGCCCCAAAATAGATAGAAAAAAAATGAAGGAAGTGTCAGCGAGGGGCGTTTCGATCACTCTTGTGGCAATAAAAATCGAGAAAAAGAAGAAAGAGAAGTTGAGCATCTC</canonical>
            <polymorphic>TCTCAGAATCTGAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAACTTCGGAAAATGAGAACTTCGGAAAGTCAGAATCTCTGAATCTGAGAATCTCAGAATCTCAGAATCTCAGAATCTGAGAATCTGAGAATCTGAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAGTCTACTTGACACTTTAGTATCTCATTCTCCCAAATTTAAAATTTAACAAGATCATAAAAAAAACGTCCAAAATAGAACTGAAAAAAATGCTATTAACCTGGCACACCAGGGCAATAATGAAACATGTGTGCATGTTTGCATGTAAATAGATTTTACTGATAAAAATTGCAACAATTCTGTTTCCGTTATCATTTAATGTCATTTTTCACATTTCTACCCTCCCACTTTCTGTGTTTTGTGTGCGTAAATTTGAGTAGATCGAATCAAAACTTTTCGAGATTCCRATGCCTTCTAAAAAATCAACGGGGGCAAAGTCATCCGTTTTTTTCCTGTCCTTGAACCATCTTGGCATGACAGTGATTTATCGGTGCGGTTGGAGATGAAAGGGAAGCGTGCCTCCACCAAGTAAATGTTATGATACGCTATTCTAGACACTGTTGAATAAATTTTACACAGTGCCTAATCAGAGTAGTCATCGAGAATCAATCCATCACTTTGATATTTGATCAAGACACCTTGACAGCGCCATAATTCACGCGCTGGGGCCCGCTGGGGTTTTATGGGCTTTTCTTCTCATCATCAACCAATCTCATCACTATTCTAATCAGAACACAATGTATCGAGTGTTTTGATGAAGATAAATTGCTGAAAGATAATGAGAAAATGTTGTATTAGGCCCCAAAATAGATAGAAAAAAAATGAAGGAAGTGTCAGCGAGGGGCGTTTCGATCACTCTTGTGGCAATAAAAATCGAGAAAAAGAAGAAAGAGAAGTTGAGCATCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCTGTTTCCGTTATCATTTA</pcr_primer_p1>
		<pcr_primer_p2>GTATCATAACATTTACTTGGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTCTGTTTCCGTTATCATTTAATGTCATTTTTCACATTTCTACCCTCCCACTTTCTGTGTTTTGTGTGCGTAAATTTGAGTAGATCGAATCAAAACTTTTCGAGATTCCAATGCCTTCTAAAAAATCAACGGGGGCAAAGTCATCCGTTTTTTTCCTGTCCTTGAACCATCTTGGCATGACAGTGATTTATCGGTGCGGTTGGAGATGAAAGGGAAGCGTGCCTCCACCAAGTAAATGTTATGATAC</canonical_amplicon>
		<polymorphic_amplicon>AATTCTGTTTCCGTTATCATTTAATGTCATTTTTCACATTTCTACCCTCCCACTTTCTGTGTTTTGTGTGCGTAAATTTGAGTAGATCGAATCAAAACTTTTCGAGATTCCRATGCCTTCTAAAAAATCAACGGGGGCAAAGTCATCCGTTTTTTTCCTGTCCTTGAACCATCTTGGCATGACAGTGATTTATCGGTGCGGTTGGAGATGAAAGGGAAGCGTGCCTCCACCAAGTAAATGTTATGATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24163</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>59567</contig_pos>
        <strand>+</strand>
        <context>AAGGGAAGCG[C/T]GCCTCCACCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTGGCATGACAGTGATTTATCGGTGCGGTTGGAGATGAAAGGGAAGCG</left_flank>
        <right_flank>GCCTCCACCAAGTAAATGTTATGATACGCTATTCTAGACACTGTTGAATA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCTCAGAATCTGAGAATCTGAGAATCTGAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAGTCTACTTGACACTTTAGTATCTCATTCTCCCAAATTTAAAATTTAACAAGATCATAAAAAAAACGTCCAAAATAGAACTGAAAAAAATGCTATTAACCTGGCACACCAGGGCAATAATGAAACATGTGTGCATGTTTGCATGTAAATAGATTTTACTGATAAAAATTGCAACAATTCTGTTTCCGTTATCATTTAATGTCATTTTTCACATTTCTACCCTCCCACTTTCTGTGTTTTGTGTGCGTAAATTTGAGTAGATCGAATCAAAACTTTTCGAGATTCCAATGCCTTCTAAAAAATCAACGGGGGCAAAGTCATCCGTTTTTTTCCTGTCCTTGAACCATCTTGGCATGACAGTGATTTATCGGTGCGGTTGGAGATGAAAGGGAAGCGTGCCTCCACCAAGTAAATGTTATGATACGCTATTCTAGACACTGTTGAATAAATTTTACACAGTGCCTAATCAGAGTAGTCATCGAGAATCAATCCATCACTTTGATATTTGATCAAGACACCTTGACAGCGCCATAATTCACGCGCTGGGGCCCGCTGGGGTTTTATGGGCTTTTCTTCTCATCATCAACCAATCTCATCACTATTCTAATCAGAACACAATGTATCGAGTGTTTTGATGAAGATAAATTGCTGAAAGATAATGAGAAAATGTTGTATTAGGCCCCAAAATAGATAGAAAAAAAATGAAGGAAGTGTCAGCGAGGGGCGTTTCGATCACTCTTGTGGCAATAAAAATCGAGAAAAAGAAGAAAGAGAAGTTGAGCATCTCATGAAAGCGCATGGAAACCTGATGTGGGGATCATATTTCAGAATGGGGCTGATGTGAGAAGATAGGAAGCAGGAAAAAAGAAATACATCACGAAATGCAAGTGTTAAACG</canonical>
            <polymorphic>AATCTCAGAATCTGAGAATCTGAGAATCTGAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAGTCTACTTGACACTTTAGTATCTCATTCTCCCAAATTTAAAATTTAACAAGATCATAAAAAAAACGTCCAAAATAGAACTGAAAAAAATGCTATTAACCTGGCACACCAGGGCAATAATGAAACATGTGTGCATGTTTGCATGTAAATAGATTTTACTGATAAAAATTGCAACAATTCTGTTTCCGTTATCATTTAATGTCATTTTTCACATTTCTACCCTCCCACTTTCTGTGTTTTGTGTGCGTAAATTTGAGTAGATCGAATCAAAACTTTTCGAGATTCCAATGCCTTCTAAAAAATCAACGGGGGCAAAGTCATCCGTTTTTTTCCTGTCCTTGAACCATCTTGGCATGACAGTGATTTATCGGTGCGGTTGGAGATGAAAGGGAAGCGYGCCTCCACCAAGTAAATGTTATGATACGCTATTCTAGACACTGTTGAATAAATTTTACACAGTGCCTAATCAGAGTAGTCATCGAGAATCAATCCATCACTTTGATATTTGATCAAGACACCTTGACAGCGCCATAATTCACGCGCTGGGGCCCGCTGGGGTTTTATGGGCTTTTCTTCTCATCATCAACCAATCTCATCACTATTCTAATCAGAACACAATGTATCGAGTGTTTTGATGAAGATAAATTGCTGAAAGATAATGAGAAAATGTTGTATTAGGCCCCAAAATAGATAGAAAAAAAATGAAGGAAGTGTCAGCGAGGGGCGTTTCGATCACTCTTGTGGCAATAAAAATCGAGAAAAAGAAGAAAGAGAAGTTGAGCATCTCATGAAAGCGCATGGAAACCTGATGTGGGGATCATATTTCAGAATGGGGCTGATGTGAGAAGATAGGAAGCAGGAAAAAAGAAATACATCACGAAATGCAAGTGTTAAACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>117 117 92 84 78 70 60 35 34 33 30 25 23 22 21 21 19 17 16 14 13 11 9 8 7 7 6 5 2 2 2</canonical_bands>
                <polymorphic_bands>117 117 92 84 78 70 60 35 34 33 31 30 23 22 21 21 19 17 16 14 13 11 9 8 7 7 5 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGTGTGCGTAAATTTGAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGATTCTCGATGACTACTCTG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTTGTGTGCGTAAATTTGAGTAGATCGAATCAAAACTTTTCGAGATTCCAATGCCTTCTAAAAAATCAACGGGGGCAAAGTCATCCGTTTTTTTCCTGTCCTTGAACCATCTTGGCATGACAGTGATTTATCGGTGCGGTTGGAGATGAAAGGGAAGCGTGCCTCCACCAAGTAAATGTTATGATACGCTATTCTAGACACTGTTGAATAAATTTTACACAGTGCCTAATCAGAGTAGTCATCGAGAATCAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTGTGTGCGTAAATTTGAGTAGATCGAATCAAAACTTTTCGAGATTCCAATGCCTTCTAAAAAATCAACGGGGGCAAAGTCATCCGTTTTTTTCCTGTCCTTGAACCATCTTGGCATGACAGTGATTTATCGGTGCGGTTGGAGATGAAAGGGAAGCGYGCCTCCACCAAGTAAATGTTATGATACGCTATTCTAGACACTGTTGAATAAATTTTACACAGTGCCTAATCAGAGTAGTCATCGAGAATCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24164</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>59616</contig_pos>
        <strand>+</strand>
        <context>CACTGTTGAA[A/T]WAATTTTACA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGCCTCCACCAAGTAAATGTTATGATACGCTATTCTAGACACTGTTGAA</left_flank>
        <right_flank>AAATTTTACACAGTGCCTAATCAGAGTAGTCATCGAGAATCAATCCATCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAGTCTACTTGACACTTTAGTATCTCATTCTCCCAAATTTAAAATTTAACAAGATCATAAAAAAAACGTCCAAAATAGAACTGAAAAAAATGCTATTAACCTGGCACACCAGGGCAATAATGAAACATGTGTGCATGTTTGCATGTAAATAGATTTTACTGATAAAAATTGCAACAATTCTGTTTCCGTTATCATTTAATGTCATTTTTCACATTTCTACCCTCCCACTTTCTGTGTTTTGTGTGCGTAAATTTGAGTAGATCGAATCAAAACTTTTCGAGATTCCAATGCCTTCTAAAAAATCAACGGGGGCAAAGTCATCCGTTTTTTTCCTGTCCTTGAACCATCTTGGCATGACAGTGATTTATCGGTGCGGTTGGAGATGAAAGGGAAGCGTGCCTCCACCAAGTAAATGTTATGATACGCTATTCTAGACACTGTTGAATAAATTTTACACAGTGCCTAATCAGAGTAGTCATCGAGAATCAATCCATCACTTTGATATTTGATCAAGACACCTTGACAGCGCCATAATTCACGCGCTGGGGCCCGCTGGGGTTTTATGGGCTTTTCTTCTCATCATCAACCAATCTCATCACTATTCTAATCAGAACACAATGTATCGAGTGTTTTGATGAAGATAAATTGCTGAAAGATAATGAGAAAATGTTGTATTAGGCCCCAAAATAGATAGAAAAAAAATGAAGGAAGTGTCAGCGAGGGGCGTTTCGATCACTCTTGTGGCAATAAAAATCGAGAAAAAGAAGAAAGAGAAGTTGAGCATCTCATGAAAGCGCATGGAAACCTGATGTGGGGATCATATTTCAGAATGGGGCTGATGTGAGAAGATAGGAAGCAGGAAAAAAGAAATACATCACGAAATGCAAGTGTTAAACGATGAGAAGAAGAATTTGAAAAGGGGTTTCCTTTCGTTTCCAGCAGAAAA</canonical>
            <polymorphic>ATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAGTCTACTTGACACTTTAGTATCTCATTCTCCCAAATTTAAAATTTAACAAGATCATAAAAAAAACGTCCAAAATAGAACTGAAAAAAATGCTATTAACCTGGCACACCAGGGCAATAATGAAACATGTGTGCATGTTTGCATGTAAATAGATTTTACTGATAAAAATTGCAACAATTCTGTTTCCGTTATCATTTAATGTCATTTTTCACATTTCTACCCTCCCACTTTCTGTGTTTTGTGTGCGTAAATTTGAGTAGATCGAATCAAAACTTTTCGAGATTCCAATGCCTTCTAAAAAATCAACGGGGGCAAAGTCATCCGTTTTTTTCCTGTCCTTGAACCATCTTGGCATGACAGTGATTTATCGGTGCGGTTGGAGATGAAAGGGAAGCGTGCCTCCACCAAGTAAATGTTATGATACGCTATTCTAGACACTGTTGAAWAAATTTTACACAGTGCCTAATCAGAGTAGTCATCGAGAATCAATCCATCACTTTGATATTTGATCAAGACACCTTGACAGCGCCATAATTCACGCGCTGGGGCCCGCTGGGGTTTTATGGGCTTTTCTTCTCATCATCAACCAATCTCATCACTATTCTAATCAGAACACAATGTATCGAGTGTTTTGATGAAGATAAATTGCTGAAAGATAATGAGAAAATGTTGTATTAGGCCCCAAAATAGATAGAAAAAAAATGAAGGAAGTGTCAGCGAGGGGCGTTTCGATCACTCTTGTGGCAATAAAAATCGAGAAAAAGAAGAAAGAGAAGTTGAGCATCTCATGAAAGCGCATGGAAACCTGATGTGGGGATCATATTTCAGAATGGGGCTGATGTGAGAAGATAGGAAGCAGGAAAAAAGAAATACATCACGAAATGCAAGTGTTAAACGATGAGAAGAAGAATTTGAAAAGGGGTTTCCTTTCGTTTCCAGCAGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATCAAAACTTTTCGAGAT</pcr_primer_p1>
		<pcr_primer_p2>TATCAAAGTGATGGATTGATTCT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CGAATCAAAACTTTTCGAGATTCCAATGCCTTCTAAAAAATCAACGGGGGCAAAGTCATCCGTTTTTTTCCTGTCCTTGAACCATCTTGGCATGACAGTGATTTATCGGTGCGGTTGGAGATGAAAGGGAAGCGTGCCTCCACCAAGTAAATGTTATGATACGCTATTCTAGACACTGTTGAATAAATTTTACACAGTGCCTAATCAGAGTAGTCATCGAGAATCAATCCATCACTTTGATA</canonical_amplicon>
		<polymorphic_amplicon>CGAATCAAAACTTTTCGAGATTCCAATGCCTTCTAAAAAATCAACGGGGGCAAAGTCATCCGTTTTTTTCCTGTCCTTGAACCATCTTGGCATGACAGTGATTTATCGGTGCGGTTGGAGATGAAAGGGAAGCGTGCCTCCACCAAGTAAATGTTATGATACGCTATTCTAGACACTGTTGAAWAAATTTTACACAGTGCCTAATCAGAGTAGTCATCGAGAATCAATCCATCACTTTGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24165</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>59617</contig_pos>
        <strand>+</strand>
        <context>ACTGTTGAAW[A/T]AATTTTACAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGCCTCCACCAAGTAAATGTTATGATACGCTATTCTAGACACTGTTGAAT</left_flank>
        <right_flank>AATTTTACACAGTGCCTAATCAGAGTAGTCATCGAGAATCAATCCATCAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAGTCTACTTGACACTTTAGTATCTCATTCTCCCAAATTTAAAATTTAACAAGATCATAAAAAAAACGTCCAAAATAGAACTGAAAAAAATGCTATTAACCTGGCACACCAGGGCAATAATGAAACATGTGTGCATGTTTGCATGTAAATAGATTTTACTGATAAAAATTGCAACAATTCTGTTTCCGTTATCATTTAATGTCATTTTTCACATTTCTACCCTCCCACTTTCTGTGTTTTGTGTGCGTAAATTTGAGTAGATCGAATCAAAACTTTTCGAGATTCCAATGCCTTCTAAAAAATCAACGGGGGCAAAGTCATCCGTTTTTTTCCTGTCCTTGAACCATCTTGGCATGACAGTGATTTATCGGTGCGGTTGGAGATGAAAGGGAAGCGTGCCTCCACCAAGTAAATGTTATGATACGCTATTCTAGACACTGTTGAATAAATTTTACACAGTGCCTAATCAGAGTAGTCATCGAGAATCAATCCATCACTTTGATATTTGATCAAGACACCTTGACAGCGCCATAATTCACGCGCTGGGGCCCGCTGGGGTTTTATGGGCTTTTCTTCTCATCATCAACCAATCTCATCACTATTCTAATCAGAACACAATGTATCGAGTGTTTTGATGAAGATAAATTGCTGAAAGATAATGAGAAAATGTTGTATTAGGCCCCAAAATAGATAGAAAAAAAATGAAGGAAGTGTCAGCGAGGGGCGTTTCGATCACTCTTGTGGCAATAAAAATCGAGAAAAAGAAGAAAGAGAAGTTGAGCATCTCATGAAAGCGCATGGAAACCTGATGTGGGGATCATATTTCAGAATGGGGCTGATGTGAGAAGATAGGAAGCAGGAAAAAAGAAATACATCACGAAATGCAAGTGTTAAACGATGAGAAGAAGAATTTGAAAAGGGGTTTCCTTTCGTTTCCAGCAGAAAAA</canonical>
            <polymorphic>TCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAGTCTACTTGACACTTTAGTATCTCATTCTCCCAAATTTAAAATTTAACAAGATCATAAAAAAAACGTCCAAAATAGAACTGAAAAAAATGCTATTAACCTGGCACACCAGGGCAATAATGAAACATGTGTGCATGTTTGCATGTAAATAGATTTTACTGATAAAAATTGCAACAATTCTGTTTCCGTTATCATTTAATGTCATTTTTCACATTTCTACCCTCCCACTTTCTGTGTTTTGTGTGCGTAAATTTGAGTAGATCGAATCAAAACTTTTCGAGATTCCAATGCCTTCTAAAAAATCAACGGGGGCAAAGTCATCCGTTTTTTTCCTGTCCTTGAACCATCTTGGCATGACAGTGATTTATCGGTGCGGTTGGAGATGAAAGGGAAGCGTGCCTCCACCAAGTAAATGTTATGATACGCTATTCTAGACACTGTTGAATWAATTTTACACAGTGCCTAATCAGAGTAGTCATCGAGAATCAATCCATCACTTTGATATTTGATCAAGACACCTTGACAGCGCCATAATTCACGCGCTGGGGCCCGCTGGGGTTTTATGGGCTTTTCTTCTCATCATCAACCAATCTCATCACTATTCTAATCAGAACACAATGTATCGAGTGTTTTGATGAAGATAAATTGCTGAAAGATAATGAGAAAATGTTGTATTAGGCCCCAAAATAGATAGAAAAAAAATGAAGGAAGTGTCAGCGAGGGGCGTTTCGATCACTCTTGTGGCAATAAAAATCGAGAAAAAGAAGAAAGAGAAGTTGAGCATCTCATGAAAGCGCATGGAAACCTGATGTGGGGATCATATTTCAGAATGGGGCTGATGTGAGAAGATAGGAAGCAGGAAAAAAGAAATACATCACGAAATGCAAGTGTTAAACGATGAGAAGAAGAATTTGAAAAGGGGTTTCCTTTCGTTTCCAGCAGAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>461 207 198 46 42 39 7</canonical_bands>
                <polymorphic_bands>659 207 46 42 39 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAATCAAAACTTTTCGAGAT</pcr_primer_p1>
		<pcr_primer_p2>TATCAAAGTGATGGATTGATTCT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CGAATCAAAACTTTTCGAGATTCCAATGCCTTCTAAAAAATCAACGGGGGCAAAGTCATCCGTTTTTTTCCTGTCCTTGAACCATCTTGGCATGACAGTGATTTATCGGTGCGGTTGGAGATGAAAGGGAAGCGTGCCTCCACCAAGTAAATGTTATGATACGCTATTCTAGACACTGTTGAATAAATTTTACACAGTGCCTAATCAGAGTAGTCATCGAGAATCAATCCATCACTTTGATA</canonical_amplicon>
		<polymorphic_amplicon>CGAATCAAAACTTTTCGAGATTCCAATGCCTTCTAAAAAATCAACGGGGGCAAAGTCATCCGTTTTTTTCCTGTCCTTGAACCATCTTGGCATGACAGTGATTTATCGGTGCGGTTGGAGATGAAAGGGAAGCGTGCCTCCACCAAGTAAATGTTATGATACGCTATTCTAGACACTGTTGAATWAATTTTACACAGTGCCTAATCAGAGTAGTCATCGAGAATCAATCCATCACTTTGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24166</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>60706</contig_pos>
        <strand></strand>
        <context>ggaaccctca[C/A]arcaaaamtc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCA</left_flank>
        <right_flank>AGCAAAACTCTGAACCTTGAAAATTCGGGATTGCAGAATTTTAGAATCTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGACCTGGCTGGGCAGAGTTGAAGTGATTTTTAGTTCTTCAAACCACGTGCCATCTCTGTTATTCGTGTTGAATAAAAAAATTTAATTTAAAAACAACACATCCCTCGTCAGACCATTACGACGACATACGGACACCTGGCGCTGCTGAGGAGGACGTATTTTAATTTGTTTTTTTGATAAAAAAAAGAGAAAAACAGAACAGAGATGTTGGAAGGGAACACGTGTGATTGAGAAGAACAATAGAGGGGGTCCCTCAGAATCTGAGAATTTCAGAATTCCATAATTTCGGAACTTCAACCTCTCAGAATCTTAGAACTTTAGAATCTCCGAAACACGGAACTACAAAATTTTGTTGCTTAGAAATTTTGTGTCTTAGAAATCCAGAATCTGAAAATCTGACACTTTCAAAGTATTTAAATCGGAGACACTAAAAATTGTAGAACCACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAACTCTGAACCTTGAAAATTCGGGATTGCAGAATTTTAGAATCTTACGTTCCCCGAATTTTAGAATTTCGGGTTTTCAGAATTCCAGAATCTCAGGATTTCAGAATCTCTGAAGTTTAAATTTTCAGAATTCCAAAACACCAGAATTTCGAAATCTGGGAATCTGAGAATCTGAGAATCTCAGAATCTCAGTATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCAGAATCTAAGAATCTCAGAATCTCAGAATCTCAGAATCTCATATCTTAAAGTTTCCGAGATTTAAAATCTCAGTGTCTGAGAATTATAGAACCACGAAATCTCAGAAATTCAAGATGTGTAAAATTTTAGAATTTCGGGAGTTTTAAAGTTTCAGGATTTCTGATCTTAGAACCACAGAATTTGAAAATCACGAAACTCAGAATTTTAGAATCGCAGAATTTGAGAATCTTTGAAAATTGAAAATTTGGAAATATTTG</canonical>
            <polymorphic>GATGACCTGGCTGGGCAGAGTTGAAGTGATTTTTAGTTCTTCAAACCACGTGCCATCTCTGTTATTCGTGTTGAATAAAAAAATTTAATTTAAAAACAACACATCCCTCGTCAGACCATTACGACGACATACGGACACCTGGCGCTGCTGAGGAGGACGTATTTTAATTTGTTTTTTTGATAAAAAAAAGAGAAAAACAGAACAGAGATGTTGGAAGGGAACACGTGTGATTGAGAAGAACAATAGAGGGGGTCCCTCAGAATCTGAGAATTTCAGAATTCCATAATTTCGGAACTTCAACCTCTCAGAATCTTAGAACTTTAGAATCTCCGAAACACGGAACTACAAAATTTTGTTGCTTAGAAATTTTGTGTCTTAGAAATCCAGAATCTGAAAATCTGACACTTTCAAAGTATTTAAATCGGAGACACTAAAAATTGTAGAACCACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCAMAGCAAAACTCTGAACCTTGAAAATTCGGGATTGCAGAATTTTAGAATCTTACGTTCCCCGAATTTTAGAATTTCGGGTTTTCAGAATTCCAGAATCTCAGGATTTCAGAATCTCTGAAGTTTAAATTTTCAGAATTCCAAAACACCAGAATTTCGAAATCTGGGAATCTGAGAATCTGAGAATCTCAGAATCTCAGTATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCAGAATCTAAGAATCTCAGAATCTCAGAATCTCAGAATCTCATATCTTAAAGTTTCCGAGATTTAAAATCTCAGTGTCTGAGAATTATAGAACCACGAAATCTCAGAAATTCAAGATGTGTAAAATTTTAGAATTTCGGGAGTTTTAAAGTTTCAGGATTTCTGATCTTAGAACCACAGAATTTGAAAATCACGAAACTCAGAATTTTAGAATCGCAGAATTTGAGAATCTTTGAAAATTGAAAATTTGGAAATATTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>173 145 108 86 67 56 43 36 36 31 31 28 26 25 20 19 18 18 16 8 4 4 2</canonical_bands>
                <polymorphic_bands>188 173 108 86 67 56 36 36 31 31 28 26 25 20 19 18 18 16 8 4 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACGAAATCACAAAAATTCAG</pcr_primer_p1>
		<pcr_primer_p2>GAATTGGTTCTCTTGATCAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>578</pcr_amplicon_size>
		<canonical_amplicon>CACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAACTCTGAACCTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>CACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCAMAGCAAAACTCTGAACCTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24167</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>60708</contig_pos>
        <strand></strand>
        <context>aaccctcama[G/A]caaaamtctg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACA</left_flank>
        <right_flank>CAAAACTCTGAACCTTGAAAATTCGGGATTGCAGAATTTTAGAATCTTAC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACCTGGCTGGGCAGAGTTGAAGTGATTTTTAGTTCTTCAAACCACGTGCCATCTCTGTTATTCGTGTTGAATAAAAAAATTTAATTTAAAAACAACACATCCCTCGTCAGACCATTACGACGACATACGGACACCTGGCGCTGCTGAGGAGGACGTATTTTAATTTGTTTTTTTGATAAAAAAAAGAGAAAAACAGAACAGAGATGTTGGAAGGGAACACGTGTGATTGAGAAGAACAATAGAGGGGGTCCCTCAGAATCTGAGAATTTCAGAATTCCATAATTTCGGAACTTCAACCTCTCAGAATCTTAGAACTTTAGAATCTCCGAAACACGGAACTACAAAATTTTGTTGCTTAGAAATTTTGTGTCTTAGAAATCCAGAATCTGAAAATCTGACACTTTCAAAGTATTTAAATCGGAGACACTAAAAATTGTAGAACCACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAACTCTGAACCTTGAAAATTCGGGATTGCAGAATTTTAGAATCTTACGTTCCCCGAATTTTAGAATTTCGGGTTTTCAGAATTCCAGAATCTCAGGATTTCAGAATCTCTGAAGTTTAAATTTTCAGAATTCCAAAACACCAGAATTTCGAAATCTGGGAATCTGAGAATCTGAGAATCTCAGAATCTCAGTATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCAGAATCTAAGAATCTCAGAATCTCAGAATCTCAGAATCTCATATCTTAAAGTTTCCGAGATTTAAAATCTCAGTGTCTGAGAATTATAGAACCACGAAATCTCAGAAATTCAAGATGTGTAAAATTTTAGAATTTCGGGAGTTTTAAAGTTTCAGGATTTCTGATCTTAGAACCACAGAATTTGAAAATCACGAAACTCAGAATTTTAGAATCGCAGAATTTGAGAATCTTTGAAAATTGAAAATTTGGAAATATTTGGT</canonical>
            <polymorphic>TGACCTGGCTGGGCAGAGTTGAAGTGATTTTTAGTTCTTCAAACCACGTGCCATCTCTGTTATTCGTGTTGAATAAAAAAATTTAATTTAAAAACAACACATCCCTCGTCAGACCATTACGACGACATACGGACACCTGGCGCTGCTGAGGAGGACGTATTTTAATTTGTTTTTTTGATAAAAAAAAGAGAAAAACAGAACAGAGATGTTGGAAGGGAACACGTGTGATTGAGAAGAACAATAGAGGGGGTCCCTCAGAATCTGAGAATTTCAGAATTCCATAATTTCGGAACTTCAACCTCTCAGAATCTTAGAACTTTAGAATCTCCGAAACACGGAACTACAAAATTTTGTTGCTTAGAAATTTTGTGTCTTAGAAATCCAGAATCTGAAAATCTGACACTTTCAAAGTATTTAAATCGGAGACACTAAAAATTGTAGAACCACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACARCAAAACTCTGAACCTTGAAAATTCGGGATTGCAGAATTTTAGAATCTTACGTTCCCCGAATTTTAGAATTTCGGGTTTTCAGAATTCCAGAATCTCAGGATTTCAGAATCTCTGAAGTTTAAATTTTCAGAATTCCAAAACACCAGAATTTCGAAATCTGGGAATCTGAGAATCTGAGAATCTCAGAATCTCAGTATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCAGAATCTAAGAATCTCAGAATCTCAGAATCTCAGAATCTCATATCTTAAAGTTTCCGAGATTTAAAATCTCAGTGTCTGAGAATTATAGAACCACGAAATCTCAGAAATTCAAGATGTGTAAAATTTTAGAATTTCGGGAGTTTTAAAGTTTCAGGATTTCTGATCTTAGAACCACAGAATTTGAAAATCACGAAACTCAGAATTTTAGAATCGCAGAATTTGAGAATCTTTGAAAATTGAAAATTTGGAAATATTTGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACGAAATCACAAAAATTCAG</pcr_primer_p1>
		<pcr_primer_p2>GAATTGGTTCTCTTGATCAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>578</pcr_amplicon_size>
		<canonical_amplicon>CACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAACTCTGAACCTTGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACARCAAAACTCTGAACCTTGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24168</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>60714</contig_pos>
        <strand></strand>
        <context>camarcaaaa[C/A]tctgaamstt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAA</left_flank>
        <right_flank>TCTGAACCTTGAAAATTCGGGATTGCAGAATTTTAGAATCTTACGTTCCC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTGGGCAGAGTTGAAGTGATTTTTAGTTCTTCAAACCACGTGCCATCTCTGTTATTCGTGTTGAATAAAAAAATTTAATTTAAAAACAACACATCCCTCGTCAGACCATTACGACGACATACGGACACCTGGCGCTGCTGAGGAGGACGTATTTTAATTTGTTTTTTTGATAAAAAAAAGAGAAAAACAGAACAGAGATGTTGGAAGGGAACACGTGTGATTGAGAAGAACAATAGAGGGGGTCCCTCAGAATCTGAGAATTTCAGAATTCCATAATTTCGGAACTTCAACCTCTCAGAATCTTAGAACTTTAGAATCTCCGAAACACGGAACTACAAAATTTTGTTGCTTAGAAATTTTGTGTCTTAGAAATCCAGAATCTGAAAATCTGACACTTTCAAAGTATTTAAATCGGAGACACTAAAAATTGTAGAACCACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAACTCTGAACCTTGAAAATTCGGGATTGCAGAATTTTAGAATCTTACGTTCCCCGAATTTTAGAATTTCGGGTTTTCAGAATTCCAGAATCTCAGGATTTCAGAATCTCTGAAGTTTAAATTTTCAGAATTCCAAAACACCAGAATTTCGAAATCTGGGAATCTGAGAATCTGAGAATCTCAGAATCTCAGTATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCAGAATCTAAGAATCTCAGAATCTCAGAATCTCAGAATCTCATATCTTAAAGTTTCCGAGATTTAAAATCTCAGTGTCTGAGAATTATAGAACCACGAAATCTCAGAAATTCAAGATGTGTAAAATTTTAGAATTTCGGGAGTTTTAAAGTTTCAGGATTTCTGATCTTAGAACCACAGAATTTGAAAATCACGAAACTCAGAATTTTAGAATCGCAGAATTTGAGAATCTTTGAAAATTGAAAATTTGGAAATATTTGGTTACTGA</canonical>
            <polymorphic>GGCTGGGCAGAGTTGAAGTGATTTTTAGTTCTTCAAACCACGTGCCATCTCTGTTATTCGTGTTGAATAAAAAAATTTAATTTAAAAACAACACATCCCTCGTCAGACCATTACGACGACATACGGACACCTGGCGCTGCTGAGGAGGACGTATTTTAATTTGTTTTTTTGATAAAAAAAAGAGAAAAACAGAACAGAGATGTTGGAAGGGAACACGTGTGATTGAGAAGAACAATAGAGGGGGTCCCTCAGAATCTGAGAATTTCAGAATTCCATAATTTCGGAACTTCAACCTCTCAGAATCTTAGAACTTTAGAATCTCCGAAACACGGAACTACAAAATTTTGTTGCTTAGAAATTTTGTGTCTTAGAAATCCAGAATCTGAAAATCTGACACTTTCAAAGTATTTAAATCGGAGACACTAAAAATTGTAGAACCACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAAMTCTGAACCTTGAAAATTCGGGATTGCAGAATTTTAGAATCTTACGTTCCCCGAATTTTAGAATTTCGGGTTTTCAGAATTCCAGAATCTCAGGATTTCAGAATCTCTGAAGTTTAAATTTTCAGAATTCCAAAACACCAGAATTTCGAAATCTGGGAATCTGAGAATCTGAGAATCTCAGAATCTCAGTATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCAGAATCTAAGAATCTCAGAATCTCAGAATCTCAGAATCTCATATCTTAAAGTTTCCGAGATTTAAAATCTCAGTGTCTGAGAATTATAGAACCACGAAATCTCAGAAATTCAAGATGTGTAAAATTTTAGAATTTCGGGAGTTTTAAAGTTTCAGGATTTCTGATCTTAGAACCACAGAATTTGAAAATCACGAAACTCAGAATTTTAGAATCGCAGAATTTGAGAATCTTTGAAAATTGAAAATTTGGAAATATTTGGTTACTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACGAAATCACAAAAATTCAG</pcr_primer_p1>
		<pcr_primer_p2>GAATTGGTTCTCTTGATCAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>578</pcr_amplicon_size>
		<canonical_amplicon>CACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAACTCTGAACCTTGAAAATTCGGGA</canonical_amplicon>
		<polymorphic_amplicon>CACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAAMTCTGAACCTTGAAAATTCGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24169</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>60721</contig_pos>
        <strand></strand>
        <context>aaamtctgaa[C/A]sttgaaaatt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAACTCTGAA</left_flank>
        <right_flank>CTTGAAAATTCGGGATTGCAGAATTTTAGAATCTTACGTTCCCCGAATTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAGTTGAAGTGATTTTTAGTTCTTCAAACCACGTGCCATCTCTGTTATTCGTGTTGAATAAAAAAATTTAATTTAAAAACAACACATCCCTCGTCAGACCATTACGACGACATACGGACACCTGGCGCTGCTGAGGAGGACGTATTTTAATTTGTTTTTTTGATAAAAAAAAGAGAAAAACAGAACAGAGATGTTGGAAGGGAACACGTGTGATTGAGAAGAACAATAGAGGGGGTCCCTCAGAATCTGAGAATTTCAGAATTCCATAATTTCGGAACTTCAACCTCTCAGAATCTTAGAACTTTAGAATCTCCGAAACACGGAACTACAAAATTTTGTTGCTTAGAAATTTTGTGTCTTAGAAATCCAGAATCTGAAAATCTGACACTTTCAAAGTATTTAAATCGGAGACACTAAAAATTGTAGAACCACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAACTCTGAACCTTGAAAATTCGGGATTGCAGAATTTTAGAATCTTACGTTCCCCGAATTTTAGAATTTCGGGTTTTCAGAATTCCAGAATCTCAGGATTTCAGAATCTCTGAAGTTTAAATTTTCAGAATTCCAAAACACCAGAATTTCGAAATCTGGGAATCTGAGAATCTGAGAATCTCAGAATCTCAGTATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCAGAATCTAAGAATCTCAGAATCTCAGAATCTCAGAATCTCATATCTTAAAGTTTCCGAGATTTAAAATCTCAGTGTCTGAGAATTATAGAACCACGAAATCTCAGAAATTCAAGATGTGTAAAATTTTAGAATTTCGGGAGTTTTAAAGTTTCAGGATTTCTGATCTTAGAACCACAGAATTTGAAAATCACGAAACTCAGAATTTTAGAATCGCAGAATTTGAGAATCTTTGAAAATTGAAAATTTGGAAATATTTGGTTACTGATCAAGAG</canonical>
            <polymorphic>CAGAGTTGAAGTGATTTTTAGTTCTTCAAACCACGTGCCATCTCTGTTATTCGTGTTGAATAAAAAAATTTAATTTAAAAACAACACATCCCTCGTCAGACCATTACGACGACATACGGACACCTGGCGCTGCTGAGGAGGACGTATTTTAATTTGTTTTTTTGATAAAAAAAAGAGAAAAACAGAACAGAGATGTTGGAAGGGAACACGTGTGATTGAGAAGAACAATAGAGGGGGTCCCTCAGAATCTGAGAATTTCAGAATTCCATAATTTCGGAACTTCAACCTCTCAGAATCTTAGAACTTTAGAATCTCCGAAACACGGAACTACAAAATTTTGTTGCTTAGAAATTTTGTGTCTTAGAAATCCAGAATCTGAAAATCTGACACTTTCAAAGTATTTAAATCGGAGACACTAAAAATTGTAGAACCACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAACTCTGAAMCTTGAAAATTCGGGATTGCAGAATTTTAGAATCTTACGTTCCCCGAATTTTAGAATTTCGGGTTTTCAGAATTCCAGAATCTCAGGATTTCAGAATCTCTGAAGTTTAAATTTTCAGAATTCCAAAACACCAGAATTTCGAAATCTGGGAATCTGAGAATCTGAGAATCTCAGAATCTCAGTATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCAGAATCTAAGAATCTCAGAATCTCAGAATCTCAGAATCTCATATCTTAAAGTTTCCGAGATTTAAAATCTCAGTGTCTGAGAATTATAGAACCACGAAATCTCAGAAATTCAAGATGTGTAAAATTTTAGAATTTCGGGAGTTTTAAAGTTTCAGGATTTCTGATCTTAGAACCACAGAATTTGAAAATCACGAAACTCAGAATTTTAGAATCGCAGAATTTGAGAATCTTTGAAAATTGAAAATTTGGAAATATTTGGTTACTGATCAAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACGAAATCACAAAAATTCAG</pcr_primer_p1>
		<pcr_primer_p2>GAATTGGTTCTCTTGATCAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>578</pcr_amplicon_size>
		<canonical_amplicon>CACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAACTCTGAACCTTGAAAATTCGGGATTGCAGA</canonical_amplicon>
		<polymorphic_amplicon>CACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAACTCTGAAMCTTGAAAATTCGGGATTGCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24170</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>60722</contig_pos>
        <strand></strand>
        <context>aamtctgaam[C/G]ttgaaaattc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAACTCTGAAC</left_flank>
        <right_flank>TTGAAAATTCGGGATTGCAGAATTTTAGAATCTTACGTTCCCCGAATTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGTTGAAGTGATTTTTAGTTCTTCAAACCACGTGCCATCTCTGTTATTCGTGTTGAATAAAAAAATTTAATTTAAAAACAACACATCCCTCGTCAGACCATTACGACGACATACGGACACCTGGCGCTGCTGAGGAGGACGTATTTTAATTTGTTTTTTTGATAAAAAAAAGAGAAAAACAGAACAGAGATGTTGGAAGGGAACACGTGTGATTGAGAAGAACAATAGAGGGGGTCCCTCAGAATCTGAGAATTTCAGAATTCCATAATTTCGGAACTTCAACCTCTCAGAATCTTAGAACTTTAGAATCTCCGAAACACGGAACTACAAAATTTTGTTGCTTAGAAATTTTGTGTCTTAGAAATCCAGAATCTGAAAATCTGACACTTTCAAAGTATTTAAATCGGAGACACTAAAAATTGTAGAACCACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAACTCTGAACCTTGAAAATTCGGGATTGCAGAATTTTAGAATCTTACGTTCCCCGAATTTTAGAATTTCGGGTTTTCAGAATTCCAGAATCTCAGGATTTCAGAATCTCTGAAGTTTAAATTTTCAGAATTCCAAAACACCAGAATTTCGAAATCTGGGAATCTGAGAATCTGAGAATCTCAGAATCTCAGTATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCAGAATCTAAGAATCTCAGAATCTCAGAATCTCAGAATCTCATATCTTAAAGTTTCCGAGATTTAAAATCTCAGTGTCTGAGAATTATAGAACCACGAAATCTCAGAAATTCAAGATGTGTAAAATTTTAGAATTTCGGGAGTTTTAAAGTTTCAGGATTTCTGATCTTAGAACCACAGAATTTGAAAATCACGAAACTCAGAATTTTAGAATCGCAGAATTTGAGAATCTTTGAAAATTGAAAATTTGGAAATATTTGGTTACTGATCAAGAGA</canonical>
            <polymorphic>AGAGTTGAAGTGATTTTTAGTTCTTCAAACCACGTGCCATCTCTGTTATTCGTGTTGAATAAAAAAATTTAATTTAAAAACAACACATCCCTCGTCAGACCATTACGACGACATACGGACACCTGGCGCTGCTGAGGAGGACGTATTTTAATTTGTTTTTTTGATAAAAAAAAGAGAAAAACAGAACAGAGATGTTGGAAGGGAACACGTGTGATTGAGAAGAACAATAGAGGGGGTCCCTCAGAATCTGAGAATTTCAGAATTCCATAATTTCGGAACTTCAACCTCTCAGAATCTTAGAACTTTAGAATCTCCGAAACACGGAACTACAAAATTTTGTTGCTTAGAAATTTTGTGTCTTAGAAATCCAGAATCTGAAAATCTGACACTTTCAAAGTATTTAAATCGGAGACACTAAAAATTGTAGAACCACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAACTCTGAACSTTGAAAATTCGGGATTGCAGAATTTTAGAATCTTACGTTCCCCGAATTTTAGAATTTCGGGTTTTCAGAATTCCAGAATCTCAGGATTTCAGAATCTCTGAAGTTTAAATTTTCAGAATTCCAAAACACCAGAATTTCGAAATCTGGGAATCTGAGAATCTGAGAATCTCAGAATCTCAGTATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCAGAATCTAAGAATCTCAGAATCTCAGAATCTCAGAATCTCATATCTTAAAGTTTCCGAGATTTAAAATCTCAGTGTCTGAGAATTATAGAACCACGAAATCTCAGAAATTCAAGATGTGTAAAATTTTAGAATTTCGGGAGTTTTAAAGTTTCAGGATTTCTGATCTTAGAACCACAGAATTTGAAAATCACGAAACTCAGAATTTTAGAATCGCAGAATTTGAGAATCTTTGAAAATTGAAAATTTGGAAATATTTGGTTACTGATCAAGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACGAAATCACAAAAATTCAG</pcr_primer_p1>
		<pcr_primer_p2>GAATTGGTTCTCTTGATCAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>578</pcr_amplicon_size>
		<canonical_amplicon>CACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAACTCTGAACCTTGAAAATTCGGGATTGCAGAA</canonical_amplicon>
		<polymorphic_amplicon>CACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAACTCTGAACSTTGAAAATTCGGGATTGCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24171</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>60765</contig_pos>
        <strand></strand>
        <context>ttacgttccc[C/A]gaattttaga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TCTGAACCTTGAAAATTCGGGATTGCAGAATTTTAGAATCTTACGTTCCC</left_flank>
        <right_flank>GAATTTTAGAATTTCGGGTTTTCAGAATTCCAGAATCTCAGGATTTCAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTATTCGTGTTGAATAAAAAAATTTAATTTAAAAACAACACATCCCTCGTCAGACCATTACGACGACATACGGACACCTGGCGCTGCTGAGGAGGACGTATTTTAATTTGTTTTTTTGATAAAAAAAAGAGAAAAACAGAACAGAGATGTTGGAAGGGAACACGTGTGATTGAGAAGAACAATAGAGGGGGTCCCTCAGAATCTGAGAATTTCAGAATTCCATAATTTCGGAACTTCAACCTCTCAGAATCTTAGAACTTTAGAATCTCCGAAACACGGAACTACAAAATTTTGTTGCTTAGAAATTTTGTGTCTTAGAAATCCAGAATCTGAAAATCTGACACTTTCAAAGTATTTAAATCGGAGACACTAAAAATTGTAGAACCACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAACTCTGAACCTTGAAAATTCGGGATTGCAGAATTTTAGAATCTTACGTTCCCCGAATTTTAGAATTTCGGGTTTTCAGAATTCCAGAATCTCAGGATTTCAGAATCTCTGAAGTTTAAATTTTCAGAATTCCAAAACACCAGAATTTCGAAATCTGGGAATCTGAGAATCTGAGAATCTCAGAATCTCAGTATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCAGAATCTAAGAATCTCAGAATCTCAGAATCTCAGAATCTCATATCTTAAAGTTTCCGAGATTTAAAATCTCAGTGTCTGAGAATTATAGAACCACGAAATCTCAGAAATTCAAGATGTGTAAAATTTTAGAATTTCGGGAGTTTTAAAGTTTCAGGATTTCTGATCTTAGAACCACAGAATTTGAAAATCACGAAACTCAGAATTTTAGAATCGCAGAATTTGAGAATCTTTGAAAATTGAAAATTTGGAAATATTTGGTTACTGATCAAGAGAACCAATTCCGAGTGAACATTTTCATTTAATTGAAAATAGATTT</canonical>
            <polymorphic>TGTTATTCGTGTTGAATAAAAAAATTTAATTTAAAAACAACACATCCCTCGTCAGACCATTACGACGACATACGGACACCTGGCGCTGCTGAGGAGGACGTATTTTAATTTGTTTTTTTGATAAAAAAAAGAGAAAAACAGAACAGAGATGTTGGAAGGGAACACGTGTGATTGAGAAGAACAATAGAGGGGGTCCCTCAGAATCTGAGAATTTCAGAATTCCATAATTTCGGAACTTCAACCTCTCAGAATCTTAGAACTTTAGAATCTCCGAAACACGGAACTACAAAATTTTGTTGCTTAGAAATTTTGTGTCTTAGAAATCCAGAATCTGAAAATCTGACACTTTCAAAGTATTTAAATCGGAGACACTAAAAATTGTAGAACCACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAACTCTGAACCTTGAAAATTCGGGATTGCAGAATTTTAGAATCTTACGTTCCCMGAATTTTAGAATTTCGGGTTTTCAGAATTCCAGAATCTCAGGATTTCAGAATCTCTGAAGTTTAAATTTTCAGAATTCCAAAACACCAGAATTTCGAAATCTGGGAATCTGAGAATCTGAGAATCTCAGAATCTCAGTATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCAGAATCTAAGAATCTCAGAATCTCAGAATCTCAGAATCTCATATCTTAAAGTTTCCGAGATTTAAAATCTCAGTGTCTGAGAATTATAGAACCACGAAATCTCAGAAATTCAAGATGTGTAAAATTTTAGAATTTCGGGAGTTTTAAAGTTTCAGGATTTCTGATCTTAGAACCACAGAATTTGAAAATCACGAAACTCAGAATTTTAGAATCGCAGAATTTGAGAATCTTTGAAAATTGAAAATTTGGAAATATTTGGTTACTGATCAAGAGAACCAATTCCGAGTGAACATTTTCATTTAATTGAAAATAGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACGAAATCACAAAAATTCAG</pcr_primer_p1>
		<pcr_primer_p2>GAATTGGTTCTCTTGATCAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>578</pcr_amplicon_size>
		<canonical_amplicon>CACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAACTCTGAACCTTGAAAATTCGGGATTGCAGAATTTTAGAATCTTACGTTCCCCGAATTTTAGAATTTCGGGTTTTCAGAATTCCAGAATCTCAGGATTTCAGAATCTCTGAAGTTTAAATTTTCAGAATTCCAAAACACCAGAATTTCGAAATCTGGGAATCTGAGAATCTGAGAATCTCAGAATCTCAGTATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCAGAATCTAAGAATCTCAGAATCTCAGAATCTCAGAATCTCATATCTTAAAGTTTCCGAGATTTAAAATCTCAGTGTCTGAGAATTATAGAACCACGAAATCTCAGAAATTCAAGATGTGTAAAATTTTAGAATTTCGGGAGTTTTAAAGTTTCAGGATTTCTGATCTTAGAACCACAGAATTTGAAAATCACGAAACTCAGAATTTTAGAATCGCAGAATTTGAGAATCTTTGAAAATTGAAAATTTGGAAATATTTGGTTACTGATCAAGAGAACCAATTC</canonical_amplicon>
		<polymorphic_amplicon>CACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAACTCTGAACCTTGAAAATTCGGGATTGCAGAATTTTAGAATCTTACGTTCCCMGAATTTTAGAATTTCGGGTTTTCAGAATTCCAGAATCTCAGGATTTCAGAATCTCTGAAGTTTAAATTTTCAGAATTCCAAAACACCAGAATTTCGAAATCTGGGAATCTGAGAATCTGAGAATCTCAGAATCTCAGTATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCAGAATCTAAGAATCTCAGAATCTCAGAATCTCAGAATCTCATATCTTAAAGTTTCCGAGATTTAAAATCTCAGTGTCTGAGAATTATAGAACCACGAAATCTCAGAAATTCAAGATGTGTAAAATTTTAGAATTTCGGGAGTTTTAAAGTTTCAGGATTTCTGATCTTAGAACCACAGAATTTGAAAATCACGAAACTCAGAATTTTAGAATCGCAGAATTTGAGAATCTTTGAAAATTGAAAATTTGGAAATATTTGGTTACTGATCAAGAGAACCAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24172</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>60956</contig_pos>
        <strand></strand>
        <context>ctcagaatct[A/C]agaatctcag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCAGAATCT</left_flank>
        <right_flank>AGAATCTCAGAATCTCAGAATCTCAGAATCTCATATCTTAAAGTTTCCGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTCCCTCAGAATCTGAGAATTTCAGAATTCCATAATTTCGGAACTTCAACCTCTCAGAATCTTAGAACTTTAGAATCTCCGAAACACGGAACTACAAAATTTTGTTGCTTAGAAATTTTGTGTCTTAGAAATCCAGAATCTGAAAATCTGACACTTTCAAAGTATTTAAATCGGAGACACTAAAAATTGTAGAACCACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAACTCTGAACCTTGAAAATTCGGGATTGCAGAATTTTAGAATCTTACGTTCCCCGAATTTTAGAATTTCGGGTTTTCAGAATTCCAGAATCTCAGGATTTCAGAATCTCTGAAGTTTAAATTTTCAGAATTCCAAAACACCAGAATTTCGAAATCTGGGAATCTGAGAATCTGAGAATCTCAGAATCTCAGTATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCAGAATCTAAGAATCTCAGAATCTCAGAATCTCAGAATCTCATATCTTAAAGTTTCCGAGATTTAAAATCTCAGTGTCTGAGAATTATAGAACCACGAAATCTCAGAAATTCAAGATGTGTAAAATTTTAGAATTTCGGGAGTTTTAAAGTTTCAGGATTTCTGATCTTAGAACCACAGAATTTGAAAATCACGAAACTCAGAATTTTAGAATCGCAGAATTTGAGAATCTTTGAAAATTGAAAATTTGGAAATATTTGGTTACTGATCAAGAGAACCAATTCCGAGTGAACATTTTCATTTAATTGAAAATAGATTTCGAGGAGGGATCATATCATTTCAATTAGATACCATTGAACTCAGAGTCTGGTGAGAAGAACTGTTCGTCTAACGAAAAAAATCTATTTTAAAAATTGGTTTAAATTTGATTTCATAGCTCCTCTGAAAACATAAATGTTACTATTTCAGACAATAAGTTGAAGAAAACAAGAATAATTGCTCAGACTGTGT</canonical>
            <polymorphic>GGTCCCTCAGAATCTGAGAATTTCAGAATTCCATAATTTCGGAACTTCAACCTCTCAGAATCTTAGAACTTTAGAATCTCCGAAACACGGAACTACAAAATTTTGTTGCTTAGAAATTTTGTGTCTTAGAAATCCAGAATCTGAAAATCTGACACTTTCAAAGTATTTAAATCGGAGACACTAAAAATTGTAGAACCACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAACTCTGAACCTTGAAAATTCGGGATTGCAGAATTTTAGAATCTTACGTTCCCCGAATTTTAGAATTTCGGGTTTTCAGAATTCCAGAATCTCAGGATTTCAGAATCTCTGAAGTTTAAATTTTCAGAATTCCAAAACACCAGAATTTCGAAATCTGGGAATCTGAGAATCTGAGAATCTCAGAATCTCAGTATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCAGAATCTMAGAATCTCAGAATCTCAGAATCTCAGAATCTCATATCTTAAAGTTTCCGAGATTTAAAATCTCAGTGTCTGAGAATTATAGAACCACGAAATCTCAGAAATTCAAGATGTGTAAAATTTTAGAATTTCGGGAGTTTTAAAGTTTCAGGATTTCTGATCTTAGAACCACAGAATTTGAAAATCACGAAACTCAGAATTTTAGAATCGCAGAATTTGAGAATCTTTGAAAATTGAAAATTTGGAAATATTTGGTTACTGATCAAGAGAACCAATTCCGAGTGAACATTTTCATTTAATTGAAAATAGATTTCGAGGAGGGATCATATCATTTCAATTAGATACCATTGAACTCAGAGTCTGGTGAGAAGAACTGTTCGTCTAACGAAAAAAATCTATTTTAAAAATTGGTTTAAATTTGATTTCATAGCTCCTCTGAAAACATAAATGTTACTATTTCAGACAATAAGTTGAAGAAAACAAGAATAATTGCTCAGACTGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACGAAATCACAAAAATTCAG</pcr_primer_p1>
		<pcr_primer_p2>GAATTGGTTCTCTTGATCAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>578</pcr_amplicon_size>
		<canonical_amplicon>CACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAACTCTGAACCTTGAAAATTCGGGATTGCAGAATTTTAGAATCTTACGTTCCCCGAATTTTAGAATTTCGGGTTTTCAGAATTCCAGAATCTCAGGATTTCAGAATCTCTGAAGTTTAAATTTTCAGAATTCCAAAACACCAGAATTTCGAAATCTGGGAATCTGAGAATCTGAGAATCTCAGAATCTCAGTATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCAGAATCTAAGAATCTCAGAATCTCAGAATCTCAGAATCTCATATCTTAAAGTTTCCGAGATTTAAAATCTCAGTGTCTGAGAATTATAGAACCACGAAATCTCAGAAATTCAAGATGTGTAAAATTTTAGAATTTCGGGAGTTTTAAAGTTTCAGGATTTCTGATCTTAGAACCACAGAATTTGAAAATCACGAAACTCAGAATTTTAGAATCGCAGAATTTGAGAATCTTTGAAAATTGAAAATTTGGAAATATTTGGTTACTGATCAAGAGAACCAATTC</canonical_amplicon>
		<polymorphic_amplicon>CACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAACTCTGAACCTTGAAAATTCGGGATTGCAGAATTTTAGAATCTTACGTTCCCCGAATTTTAGAATTTCGGGTTTTCAGAATTCCAGAATCTCAGGATTTCAGAATCTCTGAAGTTTAAATTTTCAGAATTCCAAAACACCAGAATTTCGAAATCTGGGAATCTGAGAATCTGAGAATCTCAGAATCTCAGTATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCAGAATCTMAGAATCTCAGAATCTCAGAATCTCAGAATCTCATATCTTAAAGTTTCCGAGATTTAAAATCTCAGTGTCTGAGAATTATAGAACCACGAAATCTCAGAAATTCAAGATGTGTAAAATTTTAGAATTTCGGGAGTTTTAAAGTTTCAGGATTTCTGATCTTAGAACCACAGAATTTGAAAATCACGAAACTCAGAATTTTAGAATCGCAGAATTTGAGAATCTTTGAAAATTGAAAATTTGGAAATATTTGGTTACTGATCAAGAGAACCAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24173</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>61111</contig_pos>
        <strand></strand>
        <context>caggatttct[G/A]atcttagaac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGATGTGTAAAATTTTAGAATTTCGGGAGTTTTAAAGTTTCAGGATTTCT</left_flank>
        <right_flank>ATCTTAGAACCACAGAATTTGAAAATCACGAAACTCAGAATTTTAGAATC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCAAAGTATTTAAATCGGAGACACTAAAAATTGTAGAACCACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAACTCTGAACCTTGAAAATTCGGGATTGCAGAATTTTAGAATCTTACGTTCCCCGAATTTTAGAATTTCGGGTTTTCAGAATTCCAGAATCTCAGGATTTCAGAATCTCTGAAGTTTAAATTTTCAGAATTCCAAAACACCAGAATTTCGAAATCTGGGAATCTGAGAATCTGAGAATCTCAGAATCTCAGTATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCAGAATCTAAGAATCTCAGAATCTCAGAATCTCAGAATCTCATATCTTAAAGTTTCCGAGATTTAAAATCTCAGTGTCTGAGAATTATAGAACCACGAAATCTCAGAAATTCAAGATGTGTAAAATTTTAGAATTTCGGGAGTTTTAAAGTTTCAGGATTTCTGATCTTAGAACCACAGAATTTGAAAATCACGAAACTCAGAATTTTAGAATCGCAGAATTTGAGAATCTTTGAAAATTGAAAATTTGGAAATATTTGGTTACTGATCAAGAGAACCAATTCCGAGTGAACATTTTCATTTAATTGAAAATAGATTTCGAGGAGGGATCATATCATTTCAATTAGATACCATTGAACTCAGAGTCTGGTGAGAAGAACTGTTCGTCTAACGAAAAAAATCTATTTTAAAAATTGGTTTAAATTTGATTTCATAGCTCCTCTGAAAACATAAATGTTACTATTTCAGACAATAAGTTGAAGAAAACAAGAATAATTGCTCAGACTGTGTTTACGACCAAATTTCATAAAATTGGCCAATATTAAGTCCCACACCACCACCACATGTTGCCTTTTTATTGTTGTTTTGATAGGCAGAATATTTTATATATAAAAGAACAAAAATCAGCTGGATAGGAGAGAGATTATCATATATTATTCTATTTT</canonical>
            <polymorphic>TTTCAAAGTATTTAAATCGGAGACACTAAAAATTGTAGAACCACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAACTCTGAACCTTGAAAATTCGGGATTGCAGAATTTTAGAATCTTACGTTCCCCGAATTTTAGAATTTCGGGTTTTCAGAATTCCAGAATCTCAGGATTTCAGAATCTCTGAAGTTTAAATTTTCAGAATTCCAAAACACCAGAATTTCGAAATCTGGGAATCTGAGAATCTGAGAATCTCAGAATCTCAGTATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCAGAATCTAAGAATCTCAGAATCTCAGAATCTCAGAATCTCATATCTTAAAGTTTCCGAGATTTAAAATCTCAGTGTCTGAGAATTATAGAACCACGAAATCTCAGAAATTCAAGATGTGTAAAATTTTAGAATTTCGGGAGTTTTAAAGTTTCAGGATTTCTRATCTTAGAACCACAGAATTTGAAAATCACGAAACTCAGAATTTTAGAATCGCAGAATTTGAGAATCTTTGAAAATTGAAAATTTGGAAATATTTGGTTACTGATCAAGAGAACCAATTCCGAGTGAACATTTTCATTTAATTGAAAATAGATTTCGAGGAGGGATCATATCATTTCAATTAGATACCATTGAACTCAGAGTCTGGTGAGAAGAACTGTTCGTCTAACGAAAAAAATCTATTTTAAAAATTGGTTTAAATTTGATTTCATAGCTCCTCTGAAAACATAAATGTTACTATTTCAGACAATAAGTTGAAGAAAACAAGAATAATTGCTCAGACTGTGTTTACGACCAAATTTCATAAAATTGGCCAATATTAAGTCCCACACCACCACCACATGTTGCCTTTTTATTGTTGTTTTGATAGGCAGAATATTTTATATATAAAAGAACAAAAATCAGCTGGATAGGAGAGAGATTATCATATATTATTCTATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>338 253 168 102 78 61</canonical_bands>
                <polymorphic_bands>338 270 253 78 61</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>163 87 83 81 77 72 58 38 38 35 26 24 24 23 22 19 16 16 16 16 10 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>163 96 87 83 81 77 72 38 35 26 24 24 23 22 19 16 16 16 16 10 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACGAAATCACAAAAATTCAG</pcr_primer_p1>
		<pcr_primer_p2>GAATTGGTTCTCTTGATCAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>578</pcr_amplicon_size>
		<canonical_amplicon>CACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAACTCTGAACCTTGAAAATTCGGGATTGCAGAATTTTAGAATCTTACGTTCCCCGAATTTTAGAATTTCGGGTTTTCAGAATTCCAGAATCTCAGGATTTCAGAATCTCTGAAGTTTAAATTTTCAGAATTCCAAAACACCAGAATTTCGAAATCTGGGAATCTGAGAATCTGAGAATCTCAGAATCTCAGTATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCAGAATCTAAGAATCTCAGAATCTCAGAATCTCAGAATCTCATATCTTAAAGTTTCCGAGATTTAAAATCTCAGTGTCTGAGAATTATAGAACCACGAAATCTCAGAAATTCAAGATGTGTAAAATTTTAGAATTTCGGGAGTTTTAAAGTTTCAGGATTTCTGATCTTAGAACCACAGAATTTGAAAATCACGAAACTCAGAATTTTAGAATCGCAGAATTTGAGAATCTTTGAAAATTGAAAATTTGGAAATATTTGGTTACTGATCAAGAGAACCAATTC</canonical_amplicon>
		<polymorphic_amplicon>CACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAACTCTGAACCTTGAAAATTCGGGATTGCAGAATTTTAGAATCTTACGTTCCCCGAATTTTAGAATTTCGGGTTTTCAGAATTCCAGAATCTCAGGATTTCAGAATCTCTGAAGTTTAAATTTTCAGAATTCCAAAACACCAGAATTTCGAAATCTGGGAATCTGAGAATCTGAGAATCTCAGAATCTCAGTATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCAGAATCTAAGAATCTCAGAATCTCAGAATCTCAGAATCTCATATCTTAAAGTTTCCGAGATTTAAAATCTCAGTGTCTGAGAATTATAGAACCACGAAATCTCAGAAATTCAAGATGTGTAAAATTTTAGAATTTCGGGAGTTTTAAAGTTTCAGGATTTCTRATCTTAGAACCACAGAATTTGAAAATCACGAAACTCAGAATTTTAGAATCGCAGAATTTGAGAATCTTTGAAAATTGAAAATTTGGAAATATTTGGTTACTGATCAAGAGAACCAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24174</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>61130</contig_pos>
        <strand></strand>
        <context>accacagaat[T/C]tgaaaatcac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTTCGGGAGTTTTAAAGTTTCAGGATTTCTGATCTTAGAACCACAGAAT</left_flank>
        <right_flank>TGAAAATCACGAAACTCAGAATTTTAGAATCGCAGAATTTGAGAATCTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGACACTAAAAATTGTAGAACCACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAACTCTGAACCTTGAAAATTCGGGATTGCAGAATTTTAGAATCTTACGTTCCCCGAATTTTAGAATTTCGGGTTTTCAGAATTCCAGAATCTCAGGATTTCAGAATCTCTGAAGTTTAAATTTTCAGAATTCCAAAACACCAGAATTTCGAAATCTGGGAATCTGAGAATCTGAGAATCTCAGAATCTCAGTATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCAGAATCTAAGAATCTCAGAATCTCAGAATCTCAGAATCTCATATCTTAAAGTTTCCGAGATTTAAAATCTCAGTGTCTGAGAATTATAGAACCACGAAATCTCAGAAATTCAAGATGTGTAAAATTTTAGAATTTCGGGAGTTTTAAAGTTTCAGGATTTCTGATCTTAGAACCACAGAATTTGAAAATCACGAAACTCAGAATTTTAGAATCGCAGAATTTGAGAATCTTTGAAAATTGAAAATTTGGAAATATTTGGTTACTGATCAAGAGAACCAATTCCGAGTGAACATTTTCATTTAATTGAAAATAGATTTCGAGGAGGGATCATATCATTTCAATTAGATACCATTGAACTCAGAGTCTGGTGAGAAGAACTGTTCGTCTAACGAAAAAAATCTATTTTAAAAATTGGTTTAAATTTGATTTCATAGCTCCTCTGAAAACATAAATGTTACTATTTCAGACAATAAGTTGAAGAAAACAAGAATAATTGCTCAGACTGTGTTTACGACCAAATTTCATAAAATTGGCCAATATTAAGTCCCACACCACCACCACATGTTGCCTTTTTATTGTTGTTTTGATAGGCAGAATATTTTATATATAAAAGAACAAAAATCAGCTGGATAGGAGAGAGATTATCATATATTATTCTATTTTGCAAAAATGCAAATATAGA</canonical>
            <polymorphic>GAGACACTAAAAATTGTAGAACCACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAACTCTGAACCTTGAAAATTCGGGATTGCAGAATTTTAGAATCTTACGTTCCCCGAATTTTAGAATTTCGGGTTTTCAGAATTCCAGAATCTCAGGATTTCAGAATCTCTGAAGTTTAAATTTTCAGAATTCCAAAACACCAGAATTTCGAAATCTGGGAATCTGAGAATCTGAGAATCTCAGAATCTCAGTATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCAGAATCTAAGAATCTCAGAATCTCAGAATCTCAGAATCTCATATCTTAAAGTTTCCGAGATTTAAAATCTCAGTGTCTGAGAATTATAGAACCACGAAATCTCAGAAATTCAAGATGTGTAAAATTTTAGAATTTCGGGAGTTTTAAAGTTTCAGGATTTCTGATCTTAGAACCACAGAATYTGAAAATCACGAAACTCAGAATTTTAGAATCGCAGAATTTGAGAATCTTTGAAAATTGAAAATTTGGAAATATTTGGTTACTGATCAAGAGAACCAATTCCGAGTGAACATTTTCATTTAATTGAAAATAGATTTCGAGGAGGGATCATATCATTTCAATTAGATACCATTGAACTCAGAGTCTGGTGAGAAGAACTGTTCGTCTAACGAAAAAAATCTATTTTAAAAATTGGTTTAAATTTGATTTCATAGCTCCTCTGAAAACATAAATGTTACTATTTCAGACAATAAGTTGAAGAAAACAAGAATAATTGCTCAGACTGTGTTTACGACCAAATTTCATAAAATTGGCCAATATTAAGTCCCACACCACCACCACATGTTGCCTTTTTATTGTTGTTTTGATAGGCAGAATATTTTATATATAAAAGAACAAAAATCAGCTGGATAGGAGAGAGATTATCATATATTATTCTATTTTGCAAAAATGCAAATATAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>200 177 165 98 61 48 39 36 25 24 23 16 16 16 16 15 9 8 8</canonical_bands>
                <polymorphic_bands>200 177 165 98 71 61 39 36 25 24 16 16 16 16 15 9 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>175 155 72 70 48 46 39 38 35 26 25 25 24 24 23 18 16 16 16 16 15 15 11 10 10 9 8 8 7</canonical_bands>
                <polymorphic_bands>175 155 72 71 70 46 39 38 35 26 25 25 24 24 18 16 16 16 16 15 15 11 10 10 9 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACGAAATCACAAAAATTCAG</pcr_primer_p1>
		<pcr_primer_p2>GAATTGGTTCTCTTGATCAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>578</pcr_amplicon_size>
		<canonical_amplicon>CACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAACTCTGAACCTTGAAAATTCGGGATTGCAGAATTTTAGAATCTTACGTTCCCCGAATTTTAGAATTTCGGGTTTTCAGAATTCCAGAATCTCAGGATTTCAGAATCTCTGAAGTTTAAATTTTCAGAATTCCAAAACACCAGAATTTCGAAATCTGGGAATCTGAGAATCTGAGAATCTCAGAATCTCAGTATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCAGAATCTAAGAATCTCAGAATCTCAGAATCTCAGAATCTCATATCTTAAAGTTTCCGAGATTTAAAATCTCAGTGTCTGAGAATTATAGAACCACGAAATCTCAGAAATTCAAGATGTGTAAAATTTTAGAATTTCGGGAGTTTTAAAGTTTCAGGATTTCTGATCTTAGAACCACAGAATTTGAAAATCACGAAACTCAGAATTTTAGAATCGCAGAATTTGAGAATCTTTGAAAATTGAAAATTTGGAAATATTTGGTTACTGATCAAGAGAACCAATTC</canonical_amplicon>
		<polymorphic_amplicon>CACGAAATCACAAAAATTCAGCATCTTAGAATTACAAGATCTAGGAACCCTCACAGCAAAACTCTGAACCTTGAAAATTCGGGATTGCAGAATTTTAGAATCTTACGTTCCCCGAATTTTAGAATTTCGGGTTTTCAGAATTCCAGAATCTCAGGATTTCAGAATCTCTGAAGTTTAAATTTTCAGAATTCCAAAACACCAGAATTTCGAAATCTGGGAATCTGAGAATCTGAGAATCTCAGAATCTCAGTATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCAGAATCTAAGAATCTCAGAATCTCAGAATCTCAGAATCTCATATCTTAAAGTTTCCGAGATTTAAAATCTCAGTGTCTGAGAATTATAGAACCACGAAATCTCAGAAATTCAAGATGTGTAAAATTTTAGAATTTCGGGAGTTTTAAAGTTTCAGGATTTCTGATCTTAGAACCACAGAATYTGAAAATCACGAAACTCAGAATTTTAGAATCGCAGAATTTGAGAATCTTTGAAAATTGAAAATTTGGAAATATTTGGTTACTGATCAAGAGAACCAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24175</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>61207</contig_pos>
        <strand></strand>
        <context>gaaatATTTG[G/T]TTACTGATCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAATCGCAGAATTTGAGAATCTTTGAAAATTGAAAATTTGGAAATATTTG</left_flank>
        <right_flank>TTACTGATCAAGAGAACCAATTCCGAGTGAACATTTTCATTTAATTGAAA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAAAACTCTGAACCTTGAAAATTCGGGATTGCAGAATTTTAGAATCTTACGTTCCCCGAATTTTAGAATTTCGGGTTTTCAGAATTCCAGAATCTCAGGATTTCAGAATCTCTGAAGTTTAAATTTTCAGAATTCCAAAACACCAGAATTTCGAAATCTGGGAATCTGAGAATCTGAGAATCTCAGAATCTCAGTATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCAGAATCTAAGAATCTCAGAATCTCAGAATCTCAGAATCTCATATCTTAAAGTTTCCGAGATTTAAAATCTCAGTGTCTGAGAATTATAGAACCACGAAATCTCAGAAATTCAAGATGTGTAAAATTTTAGAATTTCGGGAGTTTTAAAGTTTCAGGATTTCTGATCTTAGAACCACAGAATTTGAAAATCACGAAACTCAGAATTTTAGAATCGCAGAATTTGAGAATCTTTGAAAATTGAAAATTTGGAAATATTTGGTTACTGATCAAGAGAACCAATTCCGAGTGAACATTTTCATTTAATTGAAAATAGATTTCGAGGAGGGATCATATCATTTCAATTAGATACCATTGAACTCAGAGTCTGGTGAGAAGAACTGTTCGTCTAACGAAAAAAATCTATTTTAAAAATTGGTTTAAATTTGATTTCATAGCTCCTCTGAAAACATAAATGTTACTATTTCAGACAATAAGTTGAAGAAAACAAGAATAATTGCTCAGACTGTGTTTACGACCAAATTTCATAAAATTGGCCAATATTAAGTCCCACACCACCACCACATGTTGCCTTTTTATTGTTGTTTTGATAGGCAGAATATTTTATATATAAAAGAACAAAAATCAGCTGGATAGGAGAGAGATTATCATATATTATTCTATTTTGCAAAAATGCAAATATAGAAAGTCAAATAGTTCACACCACGTAGCGAACCGTAGCATATGTTAAGCCGACAAGAGCACACTTCTCGGAACAAAACA</canonical>
            <polymorphic>GCAAAACTCTGAACCTTGAAAATTCGGGATTGCAGAATTTTAGAATCTTACGTTCCCCGAATTTTAGAATTTCGGGTTTTCAGAATTCCAGAATCTCAGGATTTCAGAATCTCTGAAGTTTAAATTTTCAGAATTCCAAAACACCAGAATTTCGAAATCTGGGAATCTGAGAATCTGAGAATCTCAGAATCTCAGTATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCAGAATCTAAGAATCTCAGAATCTCAGAATCTCAGAATCTCATATCTTAAAGTTTCCGAGATTTAAAATCTCAGTGTCTGAGAATTATAGAACCACGAAATCTCAGAAATTCAAGATGTGTAAAATTTTAGAATTTCGGGAGTTTTAAAGTTTCAGGATTTCTGATCTTAGAACCACAGAATTTGAAAATCACGAAACTCAGAATTTTAGAATCGCAGAATTTGAGAATCTTTGAAAATTGAAAATTTGGAAATATTTGKTTACTGATCAAGAGAACCAATTCCGAGTGAACATTTTCATTTAATTGAAAATAGATTTCGAGGAGGGATCATATCATTTCAATTAGATACCATTGAACTCAGAGTCTGGTGAGAAGAACTGTTCGTCTAACGAAAAAAATCTATTTTAAAAATTGGTTTAAATTTGATTTCATAGCTCCTCTGAAAACATAAATGTTACTATTTCAGACAATAAGTTGAAGAAAACAAGAATAATTGCTCAGACTGTGTTTACGACCAAATTTCATAAAATTGGCCAATATTAAGTCCCACACCACCACCACATGTTGCCTTTTTATTGTTGTTTTGATAGGCAGAATATTTTATATATAAAAGAACAAAAATCAGCTGGATAGGAGAGAGATTATCATATATTATTCTATTTTGCAAAAATGCAAATATAGAAAGTCAAATAGTTCACACCACGTAGCGAACCGTAGCATATGTTAAGCCGACAAGAGCACACTTCTCGGAACAAAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>499 306 195</canonical_bands>
                <polymorphic_bands>694 306</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACGAAATCACAAAAATTCAG</pcr_primer_p1>
		<pcr_primer_p2>CTCCTCGAAATCTATTTTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>620</pcr_amplicon_size>
		<canonical_amplicon>GGTTACTGATCAAGAGAACCAATTCCGAGTGAACATTTTCATTTAATTGAAAATAGATTTCGAGGAG</canonical_amplicon>
		<polymorphic_amplicon>GKTTACTGATCAAGAGAACCAATTCCGAGTGAACATTTTCATTTAATTGAAAATAGATTTCGAGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24176</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>61234</contig_pos>
        <strand></strand>
        <context>CCAATTCCGA[G/A]TGAACATTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATTGAAAATTTGGAAATATTTGGTTACTGATCAAGAGAACCAATTCCGA</left_flank>
        <right_flank>TGAACATTTTCATTTAATTGAAAATAGATTTCGAGGAGGGATCATATCAT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTGCAGAATTTTAGAATCTTACGTTCCCCGAATTTTAGAATTTCGGGTTTTCAGAATTCCAGAATCTCAGGATTTCAGAATCTCTGAAGTTTAAATTTTCAGAATTCCAAAACACCAGAATTTCGAAATCTGGGAATCTGAGAATCTGAGAATCTCAGAATCTCAGTATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCAGAATCTAAGAATCTCAGAATCTCAGAATCTCAGAATCTCATATCTTAAAGTTTCCGAGATTTAAAATCTCAGTGTCTGAGAATTATAGAACCACGAAATCTCAGAAATTCAAGATGTGTAAAATTTTAGAATTTCGGGAGTTTTAAAGTTTCAGGATTTCTGATCTTAGAACCACAGAATTTGAAAATCACGAAACTCAGAATTTTAGAATCGCAGAATTTGAGAATCTTTGAAAATTGAAAATTTGGAAATATTTGGTTACTGATCAAGAGAACCAATTCCGAGTGAACATTTTCATTTAATTGAAAATAGATTTCGAGGAGGGATCATATCATTTCAATTAGATACCATTGAACTCAGAGTCTGGTGAGAAGAACTGTTCGTCTAACGAAAAAAATCTATTTTAAAAATTGGTTTAAATTTGATTTCATAGCTCCTCTGAAAACATAAATGTTACTATTTCAGACAATAAGTTGAAGAAAACAAGAATAATTGCTCAGACTGTGTTTACGACCAAATTTCATAAAATTGGCCAATATTAAGTCCCACACCACCACCACATGTTGCCTTTTTATTGTTGTTTTGATAGGCAGAATATTTTATATATAAAAGAACAAAAATCAGCTGGATAGGAGAGAGATTATCATATATTATTCTATTTTGCAAAAATGCAAATATAGAAAGTCAAATAGTTCACACCACGTAGCGAACCGTAGCATATGTTAAGCCGACAAGAGCACACTTCTCGGAACAAAACACTTAATAGTTCAACGGCTAAGAATAGA</canonical>
            <polymorphic>GATTGCAGAATTTTAGAATCTTACGTTCCCCGAATTTTAGAATTTCGGGTTTTCAGAATTCCAGAATCTCAGGATTTCAGAATCTCTGAAGTTTAAATTTTCAGAATTCCAAAACACCAGAATTTCGAAATCTGGGAATCTGAGAATCTGAGAATCTCAGAATCTCAGTATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCAGAATCTAAGAATCTCAGAATCTCAGAATCTCAGAATCTCATATCTTAAAGTTTCCGAGATTTAAAATCTCAGTGTCTGAGAATTATAGAACCACGAAATCTCAGAAATTCAAGATGTGTAAAATTTTAGAATTTCGGGAGTTTTAAAGTTTCAGGATTTCTGATCTTAGAACCACAGAATTTGAAAATCACGAAACTCAGAATTTTAGAATCGCAGAATTTGAGAATCTTTGAAAATTGAAAATTTGGAAATATTTGGTTACTGATCAAGAGAACCAATTCCGARTGAACATTTTCATTTAATTGAAAATAGATTTCGAGGAGGGATCATATCATTTCAATTAGATACCATTGAACTCAGAGTCTGGTGAGAAGAACTGTTCGTCTAACGAAAAAAATCTATTTTAAAAATTGGTTTAAATTTGATTTCATAGCTCCTCTGAAAACATAAATGTTACTATTTCAGACAATAAGTTGAAGAAAACAAGAATAATTGCTCAGACTGTGTTTACGACCAAATTTCATAAAATTGGCCAATATTAAGTCCCACACCACCACCACATGTTGCCTTTTTATTGTTGTTTTGATAGGCAGAATATTTTATATATAAAAGAACAAAAATCAGCTGGATAGGAGAGAGATTATCATATATTATTCTATTTTGCAAAAATGCAAATATAGAAAGTCAAATAGTTCACACCACGTAGCGAACCGTAGCATATGTTAAGCCGACAAGAGCACACTTCTCGGAACAAAACACTTAATAGTTCAACGGCTAAGAATAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>173 137 137 116 97 82 56 42 38 27 25 19 17 16 3 3 3 3 2 2 2</canonical_bands>
                <polymorphic_bands>179 173 137 137 116 56 42 38 27 25 19 17 16 3 3 3 3 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 221 186 91</canonical_bands>
                <polymorphic_bands>723 186 91</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACGAAATCACAAAAATTCAG</pcr_primer_p1>
		<pcr_primer_p2>GAAATGATATGATCCCTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>635</pcr_amplicon_size>
		<canonical_amplicon>AGTGAACATTTTCATTTAATTGAAAATAGATTTCGAGGAGGGATCATATCATTTC</canonical_amplicon>
		<polymorphic_amplicon>ARTGAACATTTTCATTTAATTGAAAATAGATTTCGAGGAGGGATCATATCATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24177</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>72684</contig_pos>
        <strand>+</strand>
        <context>GGTCAGTTTC[A/C]GCAAGCTAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTC</left_flank>
        <right_flank>GCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGCAATCGAAATGTCGTTTTCAGAAGAAGAGCCGTCTCCGCTAGCCACCGTCGCCTCCCCAATTCAATCTTCTGTTCAAAATAGATCGGAACAGGCTAACGGTCTTGCGATTGTGGTCGAATCGCCAAATGCAACTGGAAATGGATCCCCAGCTGCATCATCAGACCAGAACGGGCTGCCAGCGGCGGTTGAATTGCCACATCGGACCGAGACTTCATTGCCAGCAGGATCCGTAGAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTC</canonical>
            <polymorphic>CCAGCAATCGAAATGTCGTTTTCAGAAGAAGAGCCGTCTCCGCTAGCCACCGTCGCCTCCCCAATTCAATCTTCTGTTCAAAATAGATCGGAACAGGCTAACGGTCTTGCGATTGTGGTCGAATCGCCAAATGCAACTGGAAATGGATCCCCAGCTGCATCATCAGACCAGAACGGGCTGCCAGCGGCGGTTGAATTGCCACATCGGACCGAGACTTCATTGCCAGCAGGATCCGTAGAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCMGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTACCAAAAAGTCGTTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>GAAAGGATGGAAATTTGGAC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCMGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24178</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>72712</contig_pos>
        <strand>+</strand>
        <context>TATCAAATCG[A/G]TTTTCTGYTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCG</left_flank>
        <right_flank>TTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAGCCGTCTCCGCTAGCCACCGTCGCCTCCCCAATTCAATCTTCTGTTCAAAATAGATCGGAACAGGCTAACGGTCTTGCGATTGTGGTCGAATCGCCAAATGCAACTGGAAATGGATCCCCAGCTGCATCATCAGACCAGAACGGGCTGCCAGCGGCGGTTGAATTGCCACATCGGACCGAGACTTCATTGCCAGCAGGATCCGTAGAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGT</canonical>
            <polymorphic>AAGAGCCGTCTCCGCTAGCCACCGTCGCCTCCCCAATTCAATCTTCTGTTCAAAATAGATCGGAACAGGCTAACGGTCTTGCGATTGTGGTCGAATCGCCAAATGCAACTGGAAATGGATCCCCAGCTGCATCATCAGACCAGAACGGGCTGCCAGCGGCGGTTGAATTGCCACATCGGACCGAGACTTCATTGCCAGCAGGATCCGTAGAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGRTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTACCAAAAAGTCGTTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>GAAAGGATGGAAATTTGGAC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGRTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24179</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>72720</contig_pos>
        <strand>+</strand>
        <context>CGRTTTTCTG[C/T]TTCAGCCGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTG</left_flank>
        <right_flank>TTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCCGCTAGCCACCGTCGCCTCCCCAATTCAATCTTCTGTTCAAAATAGATCGGAACAGGCTAACGGTCTTGCGATTGTGGTCGAATCGCCAAATGCAACTGGAAATGGATCCCCAGCTGCATCATCAGACCAGAACGGGCTGCCAGCGGCGGTTGAATTGCCACATCGGACCGAGACTTCATTGCCAGCAGGATCCGTAGAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGTTCACTTTT</canonical>
            <polymorphic>TCTCCGCTAGCCACCGTCGCCTCCCCAATTCAATCTTCTGTTCAAAATAGATCGGAACAGGCTAACGGTCTTGCGATTGTGGTCGAATCGCCAAATGCAACTGGAAATGGATCCCCAGCTGCATCATCAGACCAGAACGGGCTGCCAGCGGCGGTTGAATTGCCACATCGGACCGAGACTTCATTGCCAGCAGGATCCGTAGAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGYTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGTTCACTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTACCAAAAAGTCGTTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>GAAAGGATGGAAATTTGGAC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGYTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24180</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>72742</contig_pos>
        <strand>+</strand>
        <context>CGACAGAGCC[A/G]AACAAGTTGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCC</left_flank>
        <right_flank>AACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCCAATTCAATCTTCTGTTCAAAATAGATCGGAACAGGCTAACGGTCTTGCGATTGTGGTCGAATCGCCAAATGCAACTGGAAATGGATCCCCAGCTGCATCATCAGACCAGAACGGGCTGCCAGCGGCGGTTGAATTGCCACATCGGACCGAGACTTCATTGCCAGCAGGATCCGTAGAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGTTCACTTTTTTCTATTTTTACATCATTTTTC</canonical>
            <polymorphic>CCCCAATTCAATCTTCTGTTCAAAATAGATCGGAACAGGCTAACGGTCTTGCGATTGTGGTCGAATCGCCAAATGCAACTGGAAATGGATCCCCAGCTGCATCATCAGACCAGAACGGGCTGCCAGCGGCGGTTGAATTGCCACATCGGACCGAGACTTCATTGCCAGCAGGATCCGTAGAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCRAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGTTCACTTTTTTCTATTTTTACATCATTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGCCATTGACAGGTAAGAC</pcr_primer_p1>
		<pcr_primer_p2>GAAAGCCACCATAGAAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>CTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCRAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24181</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>72761</contig_pos>
        <strand>+</strand>
        <context>GCCAACGACC[A/T]YTGGGTCCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACC</left_flank>
        <right_flank>TTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAATAGATCGGAACAGGCTAACGGTCTTGCGATTGTGGTCGAATCGCCAAATGCAACTGGAAATGGATCCCCAGCTGCATCATCAGACCAGAACGGGCTGCCAGCGGCGGTTGAATTGCCACATCGGACCGAGACTTCATTGCCAGCAGGATCCGTAGAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGTTCACTTTTTTCTATTTTTACATCATTTTTCTCACTTTCTTCATTTTTCT</canonical>
            <polymorphic>TCAAAATAGATCGGAACAGGCTAACGGTCTTGCGATTGTGGTCGAATCGCCAAATGCAACTGGAAATGGATCCCCAGCTGCATCATCAGACCAGAACGGGCTGCCAGCGGCGGTTGAATTGCCACATCGGACCGAGACTTCATTGCCAGCAGGATCCGTAGAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCWTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGTTCACTTTTTTCTATTTTTACATCATTTTTCTCACTTTCTTCATTTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGCCATTGACAGGTAAGAC</pcr_primer_p1>
		<pcr_primer_p2>GAAAGCCACCATAGAAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>CTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCWTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24182</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>72762</contig_pos>
        <strand>+</strand>
        <context>CCAACGACCW[C/T]TGGGTCCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCT</left_flank>
        <right_flank>TGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAATAGATCGGAACAGGCTAACGGTCTTGCGATTGTGGTCGAATCGCCAAATGCAACTGGAAATGGATCCCCAGCTGCATCATCAGACCAGAACGGGCTGCCAGCGGCGGTTGAATTGCCACATCGGACCGAGACTTCATTGCCAGCAGGATCCGTAGAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGTTCACTTTTTTCTATTTTTACATCATTTTTCTCACTTTCTTCATTTTTCTG</canonical>
            <polymorphic>CAAAATAGATCGGAACAGGCTAACGGTCTTGCGATTGTGGTCGAATCGCCAAATGCAACTGGAAATGGATCCCCAGCTGCATCATCAGACCAGAACGGGCTGCCAGCGGCGGTTGAATTGCCACATCGGACCGAGACTTCATTGCCAGCAGGATCCGTAGAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTYTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGTTCACTTTTTTCTATTTTTACATCATTTTTCTCACTTTCTTCATTTTTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGCCATTGACAGGTAAGAC</pcr_primer_p1>
		<pcr_primer_p2>GAAAGCCACCATAGAAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>CTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTYTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24183</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>72795</contig_pos>
        <strand>+</strand>
        <context>CAAGCTTTTT[C/G]GGAAAACGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTT</left_flank>
        <right_flank>GGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGTGGTCGAATCGCCAAATGCAACTGGAAATGGATCCCCAGCTGCATCATCAGACCAGAACGGGCTGCCAGCGGCGGTTGAATTGCCACATCGGACCGAGACTTCATTGCCAGCAGGATCCGTAGAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGTTCACTTTTTTCTATTTTTACATCATTTTTCTCACTTTCTTCATTTTTCTGAAATTTTGTATTGTTTTGTACCACCGTTCATGA</canonical>
            <polymorphic>ATTGTGGTCGAATCGCCAAATGCAACTGGAAATGGATCCCCAGCTGCATCATCAGACCAGAACGGGCTGCCAGCGGCGGTTGAATTGCCACATCGGACCGAGACTTCATTGCCAGCAGGATCCGTAGAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTSGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGTTCACTTTTTTCTATTTTTACATCATTTTTCTCACTTTCTTCATTTTTCTGAAATTTTGTATTGTTTTGTACCACCGTTCATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGCCATTGACAGGTAAGAC</pcr_primer_p1>
		<pcr_primer_p2>GAAAGCCACCATAGAAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>CTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTSGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24184</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>72808</contig_pos>
        <strand>+</strand>
        <context>AAAACGTTCA[G/T]TTRTMKGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCA</left_flank>
        <right_flank>TTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCCAAATGCAACTGGAAATGGATCCCCAGCTGCATCATCAGACCAGAACGGGCTGCCAGCGGCGGTTGAATTGCCACATCGGACCGAGACTTCATTGCCAGCAGGATCCGTAGAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGTTCACTTTTTTCTATTTTTACATCATTTTTCTCACTTTCTTCATTTTTCTGAAATTTTGTATTGTTTTGTACCACCGTTCATGAAAAAATTGCGTTG</canonical>
            <polymorphic>CGCCAAATGCAACTGGAAATGGATCCCCAGCTGCATCATCAGACCAGAACGGGCTGCCAGCGGCGGTTGAATTGCCACATCGGACCGAGACTTCATTGCCAGCAGGATCCGTAGAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAKTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGTTCACTTTTTTCTATTTTTACATCATTTTTCTCACTTTCTTCATTTTTCTGAAATTTTGTATTGTTTTGTACCACCGTTCATGAAAAAATTGCGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGCCATTGACAGGTAAGAC</pcr_primer_p1>
		<pcr_primer_p2>GAAAGCCACCATAGAAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>CTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAKTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24185</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>72811</contig_pos>
        <strand>+</strand>
        <context>ACGTTCAKTT[A/G]TMKGATTGRA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTT</left_flank>
        <right_flank>TCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATGCAACTGGAAATGGATCCCCAGCTGCATCATCAGACCAGAACGGGCTGCCAGCGGCGGTTGAATTGCCACATCGGACCGAGACTTCATTGCCAGCAGGATCCGTAGAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGTTCACTTTTTTCTATTTTTACATCATTTTTCTCACTTTCTTCATTTTTCTGAAATTTTGTATTGTTTTGTACCACCGTTCATGAAAAAATTGCGTTGTAT</canonical>
            <polymorphic>CAAATGCAACTGGAAATGGATCCCCAGCTGCATCATCAGACCAGAACGGGCTGCCAGCGGCGGTTGAATTGCCACATCGGACCGAGACTTCATTGCCAGCAGGATCCGTAGAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTRTCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGTTCACTTTTTTCTATTTTTACATCATTTTTCTCACTTTCTTCATTTTTCTGAAATTTTGTATTGTTTTGTACCACCGTTCATGAAAAAATTGCGTTGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGCCATTGACAGGTAAGAC</pcr_primer_p1>
		<pcr_primer_p2>GAAAGCCACCATAGAAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>CTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTRTCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24186</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>72813</contig_pos>
        <strand>+</strand>
        <context>GTTCAKTTRT[A/C]KGATTGRAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTAT</left_flank>
        <right_flank>TGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGCAACTGGAAATGGATCCCCAGCTGCATCATCAGACCAGAACGGGCTGCCAGCGGCGGTTGAATTGCCACATCGGACCGAGACTTCATTGCCAGCAGGATCCGTAGAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGTTCACTTTTTTCTATTTTTACATCATTTTTCTCACTTTCTTCATTTTTCTGAAATTTTGTATTGTTTTGTACCACCGTTCATGAAAAAATTGCGTTGTATAG</canonical>
            <polymorphic>AATGCAACTGGAAATGGATCCCCAGCTGCATCATCAGACCAGAACGGGCTGCCAGCGGCGGTTGAATTGCCACATCGGACCGAGACTTCATTGCCAGCAGGATCCGTAGAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATMTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGTTCACTTTTTTCTATTTTTACATCATTTTTCTCACTTTCTTCATTTTTCTGAAATTTTGTATTGTTTTGTACCACCGTTCATGAAAAAATTGCGTTGTATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>225 184 126 111 105 94 52 41 36 26</canonical_bands>
                <polymorphic_bands>251 184 126 111 105 94 52 41 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGCCATTGACAGGTAAGAC</pcr_primer_p1>
		<pcr_primer_p2>GAAAGCCACCATAGAAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>CTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATMTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24187</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>72814</contig_pos>
        <strand>+</strand>
        <context>TTCAKTTRTM[G/T]GATTGRAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATC</left_flank>
        <right_flank>GATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCAACTGGAAATGGATCCCCAGCTGCATCATCAGACCAGAACGGGCTGCCAGCGGCGGTTGAATTGCCACATCGGACCGAGACTTCATTGCCAGCAGGATCCGTAGAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGTTCACTTTTTTCTATTTTTACATCATTTTTCTCACTTTCTTCATTTTTCTGAAATTTTGTATTGTTTTGTACCACCGTTCATGAAAAAATTGCGTTGTATAGT</canonical>
            <polymorphic>ATGCAACTGGAAATGGATCCCCAGCTGCATCATCAGACCAGAACGGGCTGCCAGCGGCGGTTGAATTGCCACATCGGACCGAGACTTCATTGCCAGCAGGATCCGTAGAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCKGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGTTCACTTTTTTCTATTTTTACATCATTTTTCTCACTTTCTTCATTTTTCTGAAATTTTGTATTGTTTTGTACCACCGTTCATGAAAAAATTGCGTTGTATAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGCCATTGACAGGTAAGAC</pcr_primer_p1>
		<pcr_primer_p2>GAAAGCCACCATAGAAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>CTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCKGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24188</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>72820</contig_pos>
        <strand>+</strand>
        <context>TRTMKGATTG[A/G]AAACRAGTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTG</left_flank>
        <right_flank>AAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGAAATGGATCCCCAGCTGCATCATCAGACCAGAACGGGCTGCCAGCGGCGGTTGAATTGCCACATCGGACCGAGACTTCATTGCCAGCAGGATCCGTAGAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGTTCACTTTTTTCTATTTTTACATCATTTTTCTCACTTTCTTCATTTTTCTGAAATTTTGTATTGTTTTGTACCACCGTTCATGAAAAAATTGCGTTGTATAGTTTTTGC</canonical>
            <polymorphic>CTGGAAATGGATCCCCAGCTGCATCATCAGACCAGAACGGGCTGCCAGCGGCGGTTGAATTGCCACATCGGACCGAGACTTCATTGCCAGCAGGATCCGTAGAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGRAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGTTCACTTTTTTCTATTTTTACATCATTTTTCTCACTTTCTTCATTTTTCTGAAATTTTGTATTGTTTTGTACCACCGTTCATGAAAAAATTGCGTTGTATAGTTTTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGCTAAAATTTCCTTATCAAA</pcr_primer_p1>
		<pcr_primer_p2>AACAATGATCCCAATTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>221</pcr_amplicon_size>
		<canonical_amplicon>CAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTT</canonical_amplicon>
		<polymorphic_amplicon>CAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGRAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24189</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>72825</contig_pos>
        <strand>+</strand>
        <context>GATTGRAAAC[A/G]AGTTCAKTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAAC</left_flank>
        <right_flank>AGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGGATCCCCAGCTGCATCATCAGACCAGAACGGGCTGCCAGCGGCGGTTGAATTGCCACATCGGACCGAGACTTCATTGCCAGCAGGATCCGTAGAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGTTCACTTTTTTCTATTTTTACATCATTTTTCTCACTTTCTTCATTTTTCTGAAATTTTGTATTGTTTTGTACCACCGTTCATGAAAAAATTGCGTTGTATAGTTTTTGCGATGT</canonical>
            <polymorphic>AATGGATCCCCAGCTGCATCATCAGACCAGAACGGGCTGCCAGCGGCGGTTGAATTGCCACATCGGACCGAGACTTCATTGCCAGCAGGATCCGTAGAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACRAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGTTCACTTTTTTCTATTTTTACATCATTTTTCTCACTTTCTTCATTTTTCTGAAATTTTGTATTGTTTTGTACCACCGTTCATGAAAAAATTGCGTTGTATAGTTTTTGCGATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGCTAAAATTTCCTTATCAAA</pcr_primer_p1>
		<pcr_primer_p2>AACAATGATCCCAATTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>221</pcr_amplicon_size>
		<canonical_amplicon>CAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTT</canonical_amplicon>
		<polymorphic_amplicon>CAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACRAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24190</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>72832</contig_pos>
        <strand>+</strand>
        <context>AACRAGTTCA[G/T]TCATGTCTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCA</left_flank>
        <right_flank>TCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCCAGCTGCATCATCAGACCAGAACGGGCTGCCAGCGGCGGTTGAATTGCCACATCGGACCGAGACTTCATTGCCAGCAGGATCCGTAGAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGTTCACTTTTTTCTATTTTTACATCATTTTTCTCACTTTCTTCATTTTTCTGAAATTTTGTATTGTTTTGTACCACCGTTCATGAAAAAATTGCGTTGTATAGTTTTTGCGATGTTTATATT</canonical>
            <polymorphic>CCCCAGCTGCATCATCAGACCAGAACGGGCTGCCAGCGGCGGTTGAATTGCCACATCGGACCGAGACTTCATTGCCAGCAGGATCCGTAGAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAKTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGTTCACTTTTTTCTATTTTTACATCATTTTTCTCACTTTCTTCATTTTTCTGAAATTTTGTATTGTTTTGTACCACCGTTCATGAAAAAATTGCGTTGTATAGTTTTTGCGATGTTTATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGCTAAAATTTCCTTATCAAA</pcr_primer_p1>
		<pcr_primer_p2>AACAATGATCCCAATTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>221</pcr_amplicon_size>
		<canonical_amplicon>CAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTT</canonical_amplicon>
		<polymorphic_amplicon>CAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAKTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24191</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>72846</contig_pos>
        <strand>+</strand>
        <context>TGTCTGACTC[A/G]AATTTCTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTC</left_flank>
        <right_flank>AATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGACCAGAACGGGCTGCCAGCGGCGGTTGAATTGCCACATCGGACCGAGACTTCATTGCCAGCAGGATCCGTAGAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGTTCACTTTTTTCTATTTTTACATCATTTTTCTCACTTTCTTCATTTTTCTGAAATTTTGTATTGTTTTGTACCACCGTTCATGAAAAAATTGCGTTGTATAGTTTTTGCGATGTTTATATTTCTACCCACTCTCT</canonical>
            <polymorphic>TCAGACCAGAACGGGCTGCCAGCGGCGGTTGAATTGCCACATCGGACCGAGACTTCATTGCCAGCAGGATCCGTAGAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCRAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGTTCACTTTTTTCTATTTTTACATCATTTTTCTCACTTTCTTCATTTTTCTGAAATTTTGTATTGTTTTGTACCACCGTTCATGAAAAAATTGCGTTGTATAGTTTTTGCGATGTTTATATTTCTACCCACTCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>417 315 83 77 76 32</canonical_bands>
                <polymorphic_bands>493 315 83 77 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGCTAAAATTTCCTTATCAAA</pcr_primer_p1>
		<pcr_primer_p2>AACAATGATCCCAATTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>221</pcr_amplicon_size>
		<canonical_amplicon>CAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTT</canonical_amplicon>
		<polymorphic_amplicon>CAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCRAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24192</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>72872</contig_pos>
        <strand>+</strand>
        <context>GGCTTTCCTC[C/G]CTAATGGAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTC</left_flank>
        <right_flank>CTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTGAATTGCCACATCGGACCGAGACTTCATTGCCAGCAGGATCCGTAGAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGTTCACTTTTTTCTATTTTTACATCATTTTTCTCACTTTCTTCATTTTTCTGAAATTTTGTATTGTTTTGTACCACCGTTCATGAAAAAATTGCGTTGTATAGTTTTTGCGATGTTTATATTTCTACCCACTCTCTTTCATATCGTTCTCTCGATTACTATA</canonical>
            <polymorphic>GGTTGAATTGCCACATCGGACCGAGACTTCATTGCCAGCAGGATCCGTAGAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCSCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGTTCACTTTTTTCTATTTTTACATCATTTTTCTCACTTTCTTCATTTTTCTGAAATTTTGTATTGTTTTGTACCACCGTTCATGAAAAAATTGCGTTGTATAGTTTTTGCGATGTTTATATTTCTACCCACTCTCTTTCATATCGTTCTCTCGATTACTATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>389 235 231 114 31</canonical_bands>
                <polymorphic_bands>389 345 235 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCCAAATTTCCATCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTCAGATCCGTTTTCTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>GTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAA</canonical_amplicon>
		<polymorphic_amplicon>GTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCSCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24193</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>72921</contig_pos>
        <strand>+</strand>
        <context>GATGGATCCC[C/T]ATYGACTGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCC</left_flank>
        <right_flank>ATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGTTCACTTTTTTCTATTTTTACATCATTTTTCTCACTTTCTTCATTTTTCTGAAATTTTGTATTGTTTTGTACCACCGTTCATGAAAAAATTGCGTTGTATAGTTTTTGCGATGTTTATATTTCTACCCACTCTCTTTCATATCGTTCTCTCGATTACTATATATATTTTCTTCTCTCAAAAAACAGCAGGGTTTTTAGAATGGCGTTTGC</canonical>
            <polymorphic>GAAGGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCYATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGTTCACTTTTTTCTATTTTTACATCATTTTTCTCACTTTCTTCATTTTTCTGAAATTTTGTATTGTTTTGTACCACCGTTCATGAAAAAATTGCGTTGTATAGTTTTTGCGATGTTTATATTTCTACCCACTCTCTTTCATATCGTTCTCTCGATTACTATATATATTTTCTTCTCTCAAAAAACAGCAGGGTTTTTAGAATGGCGTTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCTTCTATGGTGGCTTTC</pcr_primer_p1>
		<pcr_primer_p2>ACACAGTGAACTTGAATTAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGT</canonical_amplicon>
		<polymorphic_amplicon>ATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCYATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24194</snp_id>
        <super_contig>c000301382.Contig1</super_contig>
        <contig_pos>72924</contig_pos>
        <strand>+</strand>
        <context>GGATCCCYAT[C/T]GACTGTTGAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTAT</left_flank>
        <right_flank>GACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGTTCACTTTTTTCTATTTTTACATCATTTTTCTCACTTTCTTCATTTTTCTGAAATTTTGTATTGTTTTGTACCACCGTTCATGAAAAAATTGCGTTGTATAGTTTTTGCGATGTTTATATTTCTACCCACTCTCTTTCATATCGTTCTCTCGATTACTATATATATTTTCTTCTCTCAAAAAACAGCAGGGTTTTTAGAATGGCGTTTGCAGA</canonical>
            <polymorphic>GGTCAGTTATAGCCAAAAAAAGTTTTCTTTCTAACTGGACCTTTCATTCCAGACGAATCAGAAAAGTCGAACGGAAATCCAGTAGCGCTTGGACCGTTCATTCCAGCTACCAAAAAGTCGTTTTCAGCTGGTTCACGAAAAAGACCGGCACATCAAATCACCTCTGAATCTGCAGAGCCACACAAGCTGCCATTGACAGGTAAGACGGCAATTCCTGCCGGGCTTTCGCTTGCAAAAAATTTGGCAAAGGGTCAGTTTCAGCAAGCTAAAATTTCCTTATCAAATCGGTTTTCTGCTTCAGCCGGATCGACAGAGCCGAACAAGTTGCCAACGACCTTTGGGTCCAAATTTCCATCCTTTCAAGCTTTTTGGGAAAACGTTCAGTTATCTGATTGGAAACAAGTTCAGTCATGTCTGACTCAAATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATYGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGTATTTTTTTTCTTTTTGTTCTTTTTTATATTCACTTTTTACATTTTCTGAGTTTTTGGGATGTCTTATTGTCTCTAGAGGCATCAATTGAAACTTTCTTTGTTCTTTTTCCGCTTTGTTCTATGTTCACTTTTTTCTATTTTTACATCATTTTTCTCACTTTCTTCATTTTTCTGAAATTTTGTATTGTTTTGTACCACCGTTCATGAAAAAATTGCGTTGTATAGTTTTTGCGATGTTTATATTTCTACCCACTCTCTTTCATATCGTTCTCTCGATTACTATATATATTTTCTTCTCTCAAAAAACAGCAGGGTTTTTAGAATGGCGTTTGCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATNNNNATC</site>
                <isoschizomers>
                    <enzyme>BsaBI</enzyme>
                    <enzyme>Bse8I</enzyme>
                    <enzyme>BseJI</enzyme>
                    <enzyme>BsiBI</enzyme>
                    <enzyme>BsrBRI</enzyme>
                    <enzyme>MamI</enzyme>
                </isoschizomers>
                <canonical_bands>495 400 105</canonical_bands>
                <polymorphic_bands>600 400</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>438 240 192 68 62</canonical_bands>
                <polymorphic_bands>630 240 68 62</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCTTCTATGGTGGCTTTC</pcr_primer_p1>
		<pcr_primer_p2>ACACAGTGAACTTGAATTAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATCGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGT</canonical_amplicon>
		<polymorphic_amplicon>ATTTCTTCTATGGTGGCTTTCCTCGCTAATGGAGAACCTGTTCAATTGGGATCATTGTTGCCAGATGGATCCCTATYGACTGTTGACAGTCAACCTTCGCCAGGATCAGTTGCCGGACCACCTCCTAAAGCTTCGTCTGCACCTCTTCCAGAACCACAGGCAGAAGAAAACGGATCTGAATCAAAAGACGTGGAGGTGGAAGATGTGGACAACTAGAAGAGCTAATTCAAGTTCACTGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24195</snp_id>
        <super_contig>c000400167.Contig1</super_contig>
        <contig_pos>16753</contig_pos>
        <strand>+</strand>
        <context>CGTAAGGCTT[A/T]CCAGTGACTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCGATCGTAGGGCTGGGAGTACCTGACAGTTGGGGTAAGCGTAAGGCTT</left_flank>
        <right_flank>CCAGTGACTTTTTTGCATTTTGTACATTCGGAGATGACTTTGTTGATAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTTACCCATTACTATTGTCTTTGCCGTTTATTCGACCCTCTTTCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTGGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGGCTGACCTCGGATCCACTGTCAACATGGTGCATCGACGGACGGTCCGTGAGAATGTTAGAGTTCCTAAAATTATTGATTTTTTGATAATGGGCCTAAAAATCTCGAACCTAGTCGAGCCAGAGAGCCGCTTGCGCACCTTGACCCTTCCCGCTAACCCTTTGTGTATCTCTCTCTGATTTCCTCTTTATCTCTCGCTAAAATATAGTTCAGATCCGATCGTAGGGCTGGGAGTACCTGACAGTTGGGGTAAGCGTAAGGCTTTCCAGTGACTTTTTTGCATTTTGTACATTCGGAGATGACTTTGTTGATAATGGATTTTGGGTTACAGATGTAGTACCTCGTACGCAATGCACTGAACAGGTATCCCGCTGGGAGGTGTCCGTTGATTTCGTGGGCTTCCCTTACGAGCATGAATGCAATTTTGTGATCTTTGTGAATCATGATTGGGGTGTGTGTCTCTGCTGGGAGTACACTTGATTTCACATGTGATTTGAATCGGATTAAGCCGTCTTCGTCCTTGAAGGTACGTATGTCAGATGGGAATGAGAAACCTTGTTCGTCGGCTTCAATGTAGTGCTGTTGGATGGTGAATGTTCTTGCCATCTTTCTCCTTGACCCTTCCCGCTAACTCTTTGTGTATCTCTCTCTCTGATTTCCTCTTTATCTCTCGCTAAAATATAGTTCAGATCCGATCCAAGGATTTTTTTCCACGAAGGAAAACAGAAGATTTCGAAAAAATTCGAAAAAATACGAAAAAGAGGA</canonical>
            <polymorphic>CCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTTACCCATTACTATTGTCTTTGCCGTTTATTCGACCCTCTTTCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTGGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGGCTGACCTCGGATCCACTGTCAACATGGTGCATCGACGGACGGTCCGTGAGAATGTTAGAGTTCCTAAAATTATTGATTTTTTGATAATGGGCCTAAAAATCTCGAACCTAGTCGAGCCAGAGAGCCGCTTGCGCACCTTGACCCTTCCCGCTAACCCTTTGTGTATCTCTCTCTGATTTCCTCTTTATCTCTCGCTAAAATATAGTTCAGATCCGATCGTAGGGCTGGGAGTACCTGACAGTTGGGGTAAGCGTAAGGCTTWCCAGTGACTTTTTTGCATTTTGTACATTCGGAGATGACTTTGTTGATAATGGATTTTGGGTTACAGATGTAGTACCTCGTACGCAATGCACTGAACAGGTATCCCGCTGGGAGGTGTCCGTTGATTTCGTGGGCTTCCCTTACGAGCATGAATGCAATTTTGTGATCTTTGTGAATCATGATTGGGGTGTGTGTCTCTGCTGGGAGTACACTTGATTTCACATGTGATTTGAATCGGATTAAGCCGTCTTCGTCCTTGAAGGTACGTATGTCAGATGGGAATGAGAAACCTTGTTCGTCGGCTTCAATGTAGTGCTGTTGGATGGTGAATGTTCTTGCCATCTTTCTCCTTGACCCTTCCCGCTAACTCTTTGTGTATCTCTCTCTCTGATTTCCTCTTTATCTCTCGCTAAAATATAGTTCAGATCCGATCCAAGGATTTTTTTCCACGAAGGAAAACAGAAGATTTCGAAAAAATTCGAAAAAATACGAAAAAGAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGCTAAAATATAGTTCAGATCC</pcr_primer_p1>
		<pcr_primer_p2>ATGATTCACAAAGATCACAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCGCTAAAATATAGTTCAGATCCGATCGTAGGGCTGGGAGTACCTGACAGTTGGGGTAAGCGTAAGGCTTTCCAGTGACTTTTTTGCATTTTGTACATTCGGAGATGACTTTGTTGATAATGGATTTTGGGTTACAGATGTAGTACCTCGTACGCAATGCACTGAACAGGTATCCCGCTGGGAGGTGTCCGTTGATTTCGTGGGCTTCCCTTACGAGCATGAATGCAATTTTGTGATCTTTGTGAATCAT</canonical_amplicon>
		<polymorphic_amplicon>TCGCTAAAATATAGTTCAGATCCGATCGTAGGGCTGGGAGTACCTGACAGTTGGGGTAAGCGTAAGGCTTWCCAGTGACTTTTTTGCATTTTGTACATTCGGAGATGACTTTGTTGATAATGGATTTTGGGTTACAGATGTAGTACCTCGTACGCAATGCACTGAACAGGTATCCCGCTGGGAGGTGTCCGTTGATTTCGTGGGCTTCCCTTACGAGCATGAATGCAATTTTGTGATCTTTGTGAATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24196</snp_id>
        <super_contig>c000400167.Contig1</super_contig>
        <contig_pos>16783</contig_pos>
        <strand>+</strand>
        <context>TTGTACATTC[A/G]GAGATRACTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGGGGTAAGCGTAAGGCTTTCCAGTGACTTTTTTGCATTTTGTACATTC</left_flank>
        <right_flank>GAGATGACTTTGTTGATAATGGATTTTGGGTTACAGATGTAGTACCTCGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACACCTTTACCTCTTTTCTGTATCGCTTTCTTTTACCCATTACTATTGTCTTTGCCGTTTATTCGACCCTCTTTCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTGGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGGCTGACCTCGGATCCACTGTCAACATGGTGCATCGACGGACGGTCCGTGAGAATGTTAGAGTTCCTAAAATTATTGATTTTTTGATAATGGGCCTAAAAATCTCGAACCTAGTCGAGCCAGAGAGCCGCTTGCGCACCTTGACCCTTCCCGCTAACCCTTTGTGTATCTCTCTCTGATTTCCTCTTTATCTCTCGCTAAAATATAGTTCAGATCCGATCGTAGGGCTGGGAGTACCTGACAGTTGGGGTAAGCGTAAGGCTTTCCAGTGACTTTTTTGCATTTTGTACATTCGGAGATGACTTTGTTGATAATGGATTTTGGGTTACAGATGTAGTACCTCGTACGCAATGCACTGAACAGGTATCCCGCTGGGAGGTGTCCGTTGATTTCGTGGGCTTCCCTTACGAGCATGAATGCAATTTTGTGATCTTTGTGAATCATGATTGGGGTGTGTGTCTCTGCTGGGAGTACACTTGATTTCACATGTGATTTGAATCGGATTAAGCCGTCTTCGTCCTTGAAGGTACGTATGTCAGATGGGAATGAGAAACCTTGTTCGTCGGCTTCAATGTAGTGCTGTTGGATGGTGAATGTTCTTGCCATCTTTCTCCTTGACCCTTCCCGCTAACTCTTTGTGTATCTCTCTCTCTGATTTCCTCTTTATCTCTCGCTAAAATATAGTTCAGATCCGATCCAAGGATTTTTTTCCACGAAGGAAAACAGAAGATTTCGAAAAAATTCGAAAAAATACGAAAAAGAGGAATGATCGGTGATTCGGAGCCAAAATCCATG</canonical>
            <polymorphic>TACACCTTTACCTCTTTTCTGTATCGCTTTCTTTTACCCATTACTATTGTCTTTGCCGTTTATTCGACCCTCTTTCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTGGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGGCTGACCTCGGATCCACTGTCAACATGGTGCATCGACGGACGGTCCGTGAGAATGTTAGAGTTCCTAAAATTATTGATTTTTTGATAATGGGCCTAAAAATCTCGAACCTAGTCGAGCCAGAGAGCCGCTTGCGCACCTTGACCCTTCCCGCTAACCCTTTGTGTATCTCTCTCTGATTTCCTCTTTATCTCTCGCTAAAATATAGTTCAGATCCGATCGTAGGGCTGGGAGTACCTGACAGTTGGGGTAAGCGTAAGGCTTTCCAGTGACTTTTTTGCATTTTGTACATTCRGAGATGACTTTGTTGATAATGGATTTTGGGTTACAGATGTAGTACCTCGTACGCAATGCACTGAACAGGTATCCCGCTGGGAGGTGTCCGTTGATTTCGTGGGCTTCCCTTACGAGCATGAATGCAATTTTGTGATCTTTGTGAATCATGATTGGGGTGTGTGTCTCTGCTGGGAGTACACTTGATTTCACATGTGATTTGAATCGGATTAAGCCGTCTTCGTCCTTGAAGGTACGTATGTCAGATGGGAATGAGAAACCTTGTTCGTCGGCTTCAATGTAGTGCTGTTGGATGGTGAATGTTCTTGCCATCTTTCTCCTTGACCCTTCCCGCTAACTCTTTGTGTATCTCTCTCTCTGATTTCCTCTTTATCTCTCGCTAAAATATAGTTCAGATCCGATCCAAGGATTTTTTTCCACGAAGGAAAACAGAAGATTTCGAAAAAATTCGAAAAAATACGAAAAAGAGGAATGATCGGTGATTCGGAGCCAAAATCCATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGCTAAAATATAGTTCAGATCC</pcr_primer_p1>
		<pcr_primer_p2>ATGATTCACAAAGATCACAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCGCTAAAATATAGTTCAGATCCGATCGTAGGGCTGGGAGTACCTGACAGTTGGGGTAAGCGTAAGGCTTTCCAGTGACTTTTTTGCATTTTGTACATTCGGAGATGACTTTGTTGATAATGGATTTTGGGTTACAGATGTAGTACCTCGTACGCAATGCACTGAACAGGTATCCCGCTGGGAGGTGTCCGTTGATTTCGTGGGCTTCCCTTACGAGCATGAATGCAATTTTGTGATCTTTGTGAATCAT</canonical_amplicon>
		<polymorphic_amplicon>TCGCTAAAATATAGTTCAGATCCGATCGTAGGGCTGGGAGTACCTGACAGTTGGGGTAAGCGTAAGGCTTTCCAGTGACTTTTTTGCATTTTGTACATTCRGAGATGACTTTGTTGATAATGGATTTTGGGTTACAGATGTAGTACCTCGTACGCAATGCACTGAACAGGTATCCCGCTGGGAGGTGTCCGTTGATTTCGTGGGCTTCCCTTACGAGCATGAATGCAATTTTGTGATCTTTGTGAATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24197</snp_id>
        <super_contig>c000400167.Contig1</super_contig>
        <contig_pos>16789</contig_pos>
        <strand>+</strand>
        <context>ATTCRGAGAT[A/G]ACTTTGTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAGCGTAAGGCTTTCCAGTGACTTTTTTGCATTTTGTACATTCGGAGAT</left_flank>
        <right_flank>ACTTTGTTGATAATGGATTTTGGGTTACAGATGTAGTACCTCGTACGCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTACCTCTTTTCTGTATCGCTTTCTTTTACCCATTACTATTGTCTTTGCCGTTTATTCGACCCTCTTTCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTGGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGGCTGACCTCGGATCCACTGTCAACATGGTGCATCGACGGACGGTCCGTGAGAATGTTAGAGTTCCTAAAATTATTGATTTTTTGATAATGGGCCTAAAAATCTCGAACCTAGTCGAGCCAGAGAGCCGCTTGCGCACCTTGACCCTTCCCGCTAACCCTTTGTGTATCTCTCTCTGATTTCCTCTTTATCTCTCGCTAAAATATAGTTCAGATCCGATCGTAGGGCTGGGAGTACCTGACAGTTGGGGTAAGCGTAAGGCTTTCCAGTGACTTTTTTGCATTTTGTACATTCGGAGATGACTTTGTTGATAATGGATTTTGGGTTACAGATGTAGTACCTCGTACGCAATGCACTGAACAGGTATCCCGCTGGGAGGTGTCCGTTGATTTCGTGGGCTTCCCTTACGAGCATGAATGCAATTTTGTGATCTTTGTGAATCATGATTGGGGTGTGTGTCTCTGCTGGGAGTACACTTGATTTCACATGTGATTTGAATCGGATTAAGCCGTCTTCGTCCTTGAAGGTACGTATGTCAGATGGGAATGAGAAACCTTGTTCGTCGGCTTCAATGTAGTGCTGTTGGATGGTGAATGTTCTTGCCATCTTTCTCCTTGACCCTTCCCGCTAACTCTTTGTGTATCTCTCTCTCTGATTTCCTCTTTATCTCTCGCTAAAATATAGTTCAGATCCGATCCAAGGATTTTTTTCCACGAAGGAAAACAGAAGATTTCGAAAAAATTCGAAAAAATACGAAAAAGAGGAATGATCGGTGATTCGGAGCCAAAATCCATGGTAGCT</canonical>
            <polymorphic>TTTACCTCTTTTCTGTATCGCTTTCTTTTACCCATTACTATTGTCTTTGCCGTTTATTCGACCCTCTTTCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTGGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGGCTGACCTCGGATCCACTGTCAACATGGTGCATCGACGGACGGTCCGTGAGAATGTTAGAGTTCCTAAAATTATTGATTTTTTGATAATGGGCCTAAAAATCTCGAACCTAGTCGAGCCAGAGAGCCGCTTGCGCACCTTGACCCTTCCCGCTAACCCTTTGTGTATCTCTCTCTGATTTCCTCTTTATCTCTCGCTAAAATATAGTTCAGATCCGATCGTAGGGCTGGGAGTACCTGACAGTTGGGGTAAGCGTAAGGCTTTCCAGTGACTTTTTTGCATTTTGTACATTCGGAGATRACTTTGTTGATAATGGATTTTGGGTTACAGATGTAGTACCTCGTACGCAATGCACTGAACAGGTATCCCGCTGGGAGGTGTCCGTTGATTTCGTGGGCTTCCCTTACGAGCATGAATGCAATTTTGTGATCTTTGTGAATCATGATTGGGGTGTGTGTCTCTGCTGGGAGTACACTTGATTTCACATGTGATTTGAATCGGATTAAGCCGTCTTCGTCCTTGAAGGTACGTATGTCAGATGGGAATGAGAAACCTTGTTCGTCGGCTTCAATGTAGTGCTGTTGGATGGTGAATGTTCTTGCCATCTTTCTCCTTGACCCTTCCCGCTAACTCTTTGTGTATCTCTCTCTCTGATTTCCTCTTTATCTCTCGCTAAAATATAGTTCAGATCCGATCCAAGGATTTTTTTCCACGAAGGAAAACAGAAGATTTCGAAAAAATTCGAAAAAATACGAAAAAGAGGAATGATCGGTGATTCGGAGCCAAAATCCATGGTAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGCTAAAATATAGTTCAGATCC</pcr_primer_p1>
		<pcr_primer_p2>ATGATTCACAAAGATCACAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCGCTAAAATATAGTTCAGATCCGATCGTAGGGCTGGGAGTACCTGACAGTTGGGGTAAGCGTAAGGCTTTCCAGTGACTTTTTTGCATTTTGTACATTCGGAGATGACTTTGTTGATAATGGATTTTGGGTTACAGATGTAGTACCTCGTACGCAATGCACTGAACAGGTATCCCGCTGGGAGGTGTCCGTTGATTTCGTGGGCTTCCCTTACGAGCATGAATGCAATTTTGTGATCTTTGTGAATCAT</canonical_amplicon>
		<polymorphic_amplicon>TCGCTAAAATATAGTTCAGATCCGATCGTAGGGCTGGGAGTACCTGACAGTTGGGGTAAGCGTAAGGCTTTCCAGTGACTTTTTTGCATTTTGTACATTCGGAGATRACTTTGTTGATAATGGATTTTGGGTTACAGATGTAGTACCTCGTACGCAATGCACTGAACAGGTATCCCGCTGGGAGGTGTCCGTTGATTTCGTGGGCTTCCCTTACGAGCATGAATGCAATTTTGTGATCTTTGTGAATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24198</snp_id>
        <super_contig>c000400167.Contig1</super_contig>
        <contig_pos>16801</contig_pos>
        <strand>+</strand>
        <context>CTTTGTTGAT[A/G]ATGGATTTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCCAGTGACTTTTTTGCATTTTGTACATTCGGAGATGACTTTGTTGAT</left_flank>
        <right_flank>ATGGATTTTGGGTTACAGATGTAGTACCTCGTACGCAATGCACTGAACAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTATCGCTTTCTTTTACCCATTACTATTGTCTTTGCCGTTTATTCGACCCTCTTTCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTGGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGGCTGACCTCGGATCCACTGTCAACATGGTGCATCGACGGACGGTCCGTGAGAATGTTAGAGTTCCTAAAATTATTGATTTTTTGATAATGGGCCTAAAAATCTCGAACCTAGTCGAGCCAGAGAGCCGCTTGCGCACCTTGACCCTTCCCGCTAACCCTTTGTGTATCTCTCTCTGATTTCCTCTTTATCTCTCGCTAAAATATAGTTCAGATCCGATCGTAGGGCTGGGAGTACCTGACAGTTGGGGTAAGCGTAAGGCTTTCCAGTGACTTTTTTGCATTTTGTACATTCGGAGATGACTTTGTTGATAATGGATTTTGGGTTACAGATGTAGTACCTCGTACGCAATGCACTGAACAGGTATCCCGCTGGGAGGTGTCCGTTGATTTCGTGGGCTTCCCTTACGAGCATGAATGCAATTTTGTGATCTTTGTGAATCATGATTGGGGTGTGTGTCTCTGCTGGGAGTACACTTGATTTCACATGTGATTTGAATCGGATTAAGCCGTCTTCGTCCTTGAAGGTACGTATGTCAGATGGGAATGAGAAACCTTGTTCGTCGGCTTCAATGTAGTGCTGTTGGATGGTGAATGTTCTTGCCATCTTTCTCCTTGACCCTTCCCGCTAACTCTTTGTGTATCTCTCTCTCTGATTTCCTCTTTATCTCTCGCTAAAATATAGTTCAGATCCGATCCAAGGATTTTTTTCCACGAAGGAAAACAGAAGATTTCGAAAAAATTCGAAAAAATACGAAAAAGAGGAATGATCGGTGATTCGGAGCCAAAATCCATGGTAGCTACACGTTTCCCG</canonical>
            <polymorphic>CTGTATCGCTTTCTTTTACCCATTACTATTGTCTTTGCCGTTTATTCGACCCTCTTTCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTGGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGGCTGACCTCGGATCCACTGTCAACATGGTGCATCGACGGACGGTCCGTGAGAATGTTAGAGTTCCTAAAATTATTGATTTTTTGATAATGGGCCTAAAAATCTCGAACCTAGTCGAGCCAGAGAGCCGCTTGCGCACCTTGACCCTTCCCGCTAACCCTTTGTGTATCTCTCTCTGATTTCCTCTTTATCTCTCGCTAAAATATAGTTCAGATCCGATCGTAGGGCTGGGAGTACCTGACAGTTGGGGTAAGCGTAAGGCTTTCCAGTGACTTTTTTGCATTTTGTACATTCGGAGATGACTTTGTTGATRATGGATTTTGGGTTACAGATGTAGTACCTCGTACGCAATGCACTGAACAGGTATCCCGCTGGGAGGTGTCCGTTGATTTCGTGGGCTTCCCTTACGAGCATGAATGCAATTTTGTGATCTTTGTGAATCATGATTGGGGTGTGTGTCTCTGCTGGGAGTACACTTGATTTCACATGTGATTTGAATCGGATTAAGCCGTCTTCGTCCTTGAAGGTACGTATGTCAGATGGGAATGAGAAACCTTGTTCGTCGGCTTCAATGTAGTGCTGTTGGATGGTGAATGTTCTTGCCATCTTTCTCCTTGACCCTTCCCGCTAACTCTTTGTGTATCTCTCTCTCTGATTTCCTCTTTATCTCTCGCTAAAATATAGTTCAGATCCGATCCAAGGATTTTTTTCCACGAAGGAAAACAGAAGATTTCGAAAAAATTCGAAAAAATACGAAAAAGAGGAATGATCGGTGATTCGGAGCCAAAATCCATGGTAGCTACACGTTTCCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGCTAAAATATAGTTCAGATCC</pcr_primer_p1>
		<pcr_primer_p2>ATGATTCACAAAGATCACAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCGCTAAAATATAGTTCAGATCCGATCGTAGGGCTGGGAGTACCTGACAGTTGGGGTAAGCGTAAGGCTTTCCAGTGACTTTTTTGCATTTTGTACATTCGGAGATGACTTTGTTGATAATGGATTTTGGGTTACAGATGTAGTACCTCGTACGCAATGCACTGAACAGGTATCCCGCTGGGAGGTGTCCGTTGATTTCGTGGGCTTCCCTTACGAGCATGAATGCAATTTTGTGATCTTTGTGAATCAT</canonical_amplicon>
		<polymorphic_amplicon>TCGCTAAAATATAGTTCAGATCCGATCGTAGGGCTGGGAGTACCTGACAGTTGGGGTAAGCGTAAGGCTTTCCAGTGACTTTTTTGCATTTTGTACATTCGGAGATGACTTTGTTGATRATGGATTTTGGGTTACAGATGTAGTACCTCGTACGCAATGCACTGAACAGGTATCCCGCTGGGAGGTGTCCGTTGATTTCGTGGGCTTCCCTTACGAGCATGAATGCAATTTTGTGATCTTTGTGAATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24199</snp_id>
        <super_contig>c000400167.Contig1</super_contig>
        <contig_pos>16813</contig_pos>
        <strand>+</strand>
        <context>TGGATTTTGG[A/G]TTACAGATGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTGCATTTTGTACATTCGGAGATGACTTTGTTGATAATGGATTTTGG</left_flank>
        <right_flank>TTACAGATGTAGTACCTCGTACGCAATGCACTGAACAGGTATCCCGCTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTACCCATTACTATTGTCTTTGCCGTTTATTCGACCCTCTTTCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTGGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGGCTGACCTCGGATCCACTGTCAACATGGTGCATCGACGGACGGTCCGTGAGAATGTTAGAGTTCCTAAAATTATTGATTTTTTGATAATGGGCCTAAAAATCTCGAACCTAGTCGAGCCAGAGAGCCGCTTGCGCACCTTGACCCTTCCCGCTAACCCTTTGTGTATCTCTCTCTGATTTCCTCTTTATCTCTCGCTAAAATATAGTTCAGATCCGATCGTAGGGCTGGGAGTACCTGACAGTTGGGGTAAGCGTAAGGCTTTCCAGTGACTTTTTTGCATTTTGTACATTCGGAGATGACTTTGTTGATAATGGATTTTGGGTTACAGATGTAGTACCTCGTACGCAATGCACTGAACAGGTATCCCGCTGGGAGGTGTCCGTTGATTTCGTGGGCTTCCCTTACGAGCATGAATGCAATTTTGTGATCTTTGTGAATCATGATTGGGGTGTGTGTCTCTGCTGGGAGTACACTTGATTTCACATGTGATTTGAATCGGATTAAGCCGTCTTCGTCCTTGAAGGTACGTATGTCAGATGGGAATGAGAAACCTTGTTCGTCGGCTTCAATGTAGTGCTGTTGGATGGTGAATGTTCTTGCCATCTTTCTCCTTGACCCTTCCCGCTAACTCTTTGTGTATCTCTCTCTCTGATTTCCTCTTTATCTCTCGCTAAAATATAGTTCAGATCCGATCCAAGGATTTTTTTCCACGAAGGAAAACAGAAGATTTCGAAAAAATTCGAAAAAATACGAAAAAGAGGAATGATCGGTGATTCGGAGCCAAAATCCATGGTAGCTACACGTTTCCCGCCTCGAAGCGAT</canonical>
            <polymorphic>CTTTTACCCATTACTATTGTCTTTGCCGTTTATTCGACCCTCTTTCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTGGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGGCTGACCTCGGATCCACTGTCAACATGGTGCATCGACGGACGGTCCGTGAGAATGTTAGAGTTCCTAAAATTATTGATTTTTTGATAATGGGCCTAAAAATCTCGAACCTAGTCGAGCCAGAGAGCCGCTTGCGCACCTTGACCCTTCCCGCTAACCCTTTGTGTATCTCTCTCTGATTTCCTCTTTATCTCTCGCTAAAATATAGTTCAGATCCGATCGTAGGGCTGGGAGTACCTGACAGTTGGGGTAAGCGTAAGGCTTTCCAGTGACTTTTTTGCATTTTGTACATTCGGAGATGACTTTGTTGATAATGGATTTTGGRTTACAGATGTAGTACCTCGTACGCAATGCACTGAACAGGTATCCCGCTGGGAGGTGTCCGTTGATTTCGTGGGCTTCCCTTACGAGCATGAATGCAATTTTGTGATCTTTGTGAATCATGATTGGGGTGTGTGTCTCTGCTGGGAGTACACTTGATTTCACATGTGATTTGAATCGGATTAAGCCGTCTTCGTCCTTGAAGGTACGTATGTCAGATGGGAATGAGAAACCTTGTTCGTCGGCTTCAATGTAGTGCTGTTGGATGGTGAATGTTCTTGCCATCTTTCTCCTTGACCCTTCCCGCTAACTCTTTGTGTATCTCTCTCTCTGATTTCCTCTTTATCTCTCGCTAAAATATAGTTCAGATCCGATCCAAGGATTTTTTTCCACGAAGGAAAACAGAAGATTTCGAAAAAATTCGAAAAAATACGAAAAAGAGGAATGATCGGTGATTCGGAGCCAAAATCCATGGTAGCTACACGTTTCCCGCCTCGAAGCGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 443 56</canonical_bands>
                <polymorphic_bands>557 443</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGCTAAAATATAGTTCAGATCC</pcr_primer_p1>
		<pcr_primer_p2>ATGATTCACAAAGATCACAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCGCTAAAATATAGTTCAGATCCGATCGTAGGGCTGGGAGTACCTGACAGTTGGGGTAAGCGTAAGGCTTTCCAGTGACTTTTTTGCATTTTGTACATTCGGAGATGACTTTGTTGATAATGGATTTTGGGTTACAGATGTAGTACCTCGTACGCAATGCACTGAACAGGTATCCCGCTGGGAGGTGTCCGTTGATTTCGTGGGCTTCCCTTACGAGCATGAATGCAATTTTGTGATCTTTGTGAATCAT</canonical_amplicon>
		<polymorphic_amplicon>TCGCTAAAATATAGTTCAGATCCGATCGTAGGGCTGGGAGTACCTGACAGTTGGGGTAAGCGTAAGGCTTTCCAGTGACTTTTTTGCATTTTGTACATTCGGAGATGACTTTGTTGATAATGGATTTTGGRTTACAGATGTAGTACCTCGTACGCAATGCACTGAACAGGTATCCCGCTGGGAGGTGTCCGTTGATTTCGTGGGCTTCCCTTACGAGCATGAATGCAATTTTGTGATCTTTGTGAATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24200</snp_id>
        <super_contig>c000400167.Contig1</super_contig>
        <contig_pos>33651</contig_pos>
        <strand>+</strand>
        <context>AATGCTTTTT[A/C]GAACATACCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCGGCATATGGCTGGAAATTACAATATTCTATTTTCAAAAAATGCTTTTT</left_flank>
        <right_flank>GAACATACCTCCCGTGTGTCATATTTTATGGGAACAAATCGCCGGTGTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATACCTAAACAATTTTCATGAAAATATCAAATAGCTTCTAGGAATTCTTTCATTATTATTTCAAAAATTCTCGTTTAAATATTTTTCTGGATTTTTGCAAATCTATGAGTAAGGTAAGAGACTACCCTATTTTCTCTACTAGAAACCCAGCCCATGCACTTCAAGCTCAATAATGTCGGTTCCTATGAAAGTTATCAAAAGTTTGTCGACAGATAAAATATTGGTCATCTCATGATGAATAAATTATCAATTGGAAATTTGTTTATATCTTATGAAGAAATCGAGATAATTGAGCTTGAAGTGCACATATATGGTGGGCTTCTATTACAGCAAATACGGTATTTATTTGTTTTTTTTTCAATTTTCTTAACAAATTTCAGAATAATAAAAAAACTTACTGTCCATCTGGCAAAATTGTTCGTCATGCCCAATGGAAGGAGGATATCTTCGGCATATGGCTGGAAATTACAATATTCTATTTTCAAAAAATGCTTTTTCGAACATACCTCCCGTGTGTCATATTTTATGGGAACAAATCGCCGGTGTTCTTTATGCATGTATATTTCTAAGTTACCCGTCCGGATCAATACGAGTTGTTTAGTTGGGTTAATATTGTAATTCAGAACTGAATAGTGTATAATGTGCTTCATTGTTGGGCGAGGAAATGGAAGTGCAGGAGGAGCGGCTTCTGGAAATGCTTCATCGGCTTCTGGCGGTAGAGCAACGACTCGTGGAGCTGGATTGCGATTCATTATCTGAAAAAGGAACATATTGCTTATCACTGAAGGGAAAAAAGAAGAAAATAAGTGTAACAGCAAGAATCAAAATTCTCGAAGACTAACTGGTAAAAAAGACAAATCATTTATATATTTTTAATCTTTTTGTGCAATTGTCTGTACGAAAAAATTGTCAGCTACAAAAACTGAGTCCTGAAGTTTTTAAACTGCCAAAATCTTAGTAAAAAGAGTATAAAATCGCCTGCATGAAAAAAATAGATT</canonical>
            <polymorphic>ACATACCTAAACAATTTTCATGAAAATATCAAATAGCTTCTAGGAATTCTTTCATTATTATTTCAAAAATTCTCGTTTAAATATTTTTCTGGATTTTTGCAAATCTATGAGTAAGGTAAGAGACTACCCTATTTTCTCTACTAGAAACCCAGCCCATGCACTTCAAGCTCAATAATGTCGGTTCCTATGAAAGTTATCAAAAGTTTGTCGACAGATAAAATATTGGTCATCTCATGATGAATAAATTATCAATTGGAAATTTGTTTATATCTTATGAAGAAATCGAGATAATTGAGCTTGAAGTGCACATATATGGTGGGCTTCTATTACAGCAAATACGGTATTTATTTGTTTTTTTTTCAATTTTCTTAACAAATTTCAGAATAATAAAAAAACTTACTGTCCATCTGGCAAAATTGTTCGTCATGCCCAATGGAAGGAGGATATCTTCGGCATATGGCTGGAAATTACAATATTCTATTTTCAAAAAATGCTTTTTMGAACATACCTCCCGTGTGTCATATTTTATGGGAACAAATCGCCGGTGTTCTTTATGCATGTATATTTCTAAGTTACCCGTCCGGATCAATACGAGTTGTTTAGTTGGGTTAATATTGTAATTCAGAACTGAATAGTGTATAATGTGCTTCATTGTTGGGCGAGGAAATGGAAGTGCAGGAGGAGCGGCTTCTGGAAATGCTTCATCGGCTTCTGGCGGTAGAGCAACGACTCGTGGAGCTGGATTGCGATTCATTATCTGAAAAAGGAACATATTGCTTATCACTGAAGGGAAAAAAGAAGAAAATAAGTGTAACAGCAAGAATCAAAATTCTCGAAGACTAACTGGTAAAAAAGACAAATCATTTATATATTTTTAATCTTTTTGTGCAATTGTCTGTACGAAAAAATTGTCAGCTACAAAAACTGAGTCCTGAAGTTTTTAAACTGCCAAAATCTTAGTAAAAAGAGTATAAAATCGCCTGCATGAAAAAAATAGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>334 216 209 166 75</canonical_bands>
                <polymorphic_bands>550 209 166 75</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGAGGATATCTTCGGCATA</pcr_primer_p1>
		<pcr_primer_p2>CAACAATGAAGCACATTATACAC</pcr_primer_p2>
		<pcr_amplicon_size>220</pcr_amplicon_size>
		<canonical_amplicon>AGGAGGATATCTTCGGCATATGGCTGGAAATTACAATATTCTATTTTCAAAAAATGCTTTTTCGAACATACCTCCCGTGTGTCATATTTTATGGGAACAAATCGCCGGTGTTCTTTATGCATGTATATTTCTAAGTTACCCGTCCGGATCAATACGAGTTGTTTAGTTGGGTTAATATTGTAATTCAGAACTGAATAGTGTATAATGTGCTTCATTGTTG</canonical_amplicon>
		<polymorphic_amplicon>AGGAGGATATCTTCGGCATATGGCTGGAAATTACAATATTCTATTTTCAAAAAATGCTTTTTMGAACATACCTCCCGTGTGTCATATTTTATGGGAACAAATCGCCGGTGTTCTTTATGCATGTATATTTCTAAGTTACCCGTCCGGATCAATACGAGTTGTTTAGTTGGGTTAATATTGTAATTCAGAACTGAATAGTGTATAATGTGCTTCATTGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24201</snp_id>
        <super_contig>c000400167.Contig1</super_contig>
        <contig_pos>120183</contig_pos>
        <strand>+</strand>
        <context>ATCCATCTCG[G/T]CGCTAGCCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CACGCTTCTCGTCGGCTCTGACTGCGGCATCCTCATCATCATCCATCTCG</left_flank>
        <right_flank>CGCTAGCCTCGATCCGCACGAAATTGGGAATCCCGGCTTCTGATGAACCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTCATTGATTTTCTTCAACTTGCATCTTTTTCGTCGGCTGTCAGCAATGGAAGCGTTGAAAAAACATTCAAGATTATTATGTTAAGGTATTAAAACAAAATGAGCACATATTGAACTCGCGAAACTTTTTAGAAACAGAAAAAAATTTCCCACCTTCCATAAAATTGCCTGCTGCTGCTTTCGATTTTCGAAAAGCTTGTCATTCAAACTTCTGGGGACTTTATCATCATTGGAGAAATTGGGCAATGAACTCTCTGAAAACTCGCTGAATTAATAACGAAAAATAGGTTTTCAAGGCGTGAGAAATGAAAATTTTTCCAACAAAAATAGTTGTATATTTCATTATTCGTTTATTTGCACTTCAATAAATGTAACTTAAAAAATGAAAAAATAAATGAGGGGGGAATGTGGGAGAGGGTAAAAATAAAAAAAGTATTGAAAACATCACGCTTCTCGTCGGCTCTGACTGCGGCATCCTCATCATCATCCATCTCGTCGCTAGCCTCGATCCGCACGAAATTGGGAATCCCGGCTTCTGATGAACCCTCTTCTCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGCGTTAGCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTC</canonical>
            <polymorphic>TTTTTTCATTGATTTTCTTCAACTTGCATCTTTTTCGTCGGCTGTCAGCAATGGAAGCGTTGAAAAAACATTCAAGATTATTATGTTAAGGTATTAAAACAAAATGAGCACATATTGAACTCGCGAAACTTTTTAGAAACAGAAAAAAATTTCCCACCTTCCATAAAATTGCCTGCTGCTGCTTTCGATTTTCGAAAAGCTTGTCATTCAAACTTCTGGGGACTTTATCATCATTGGAGAAATTGGGCAATGAACTCTCTGAAAACTCGCTGAATTAATAACGAAAAATAGGTTTTCAAGGCGTGAGAAATGAAAATTTTTCCAACAAAAATAGTTGTATATTTCATTATTCGTTTATTTGCACTTCAATAAATGTAACTTAAAAAATGAAAAAATAAATGAGGGGGGAATGTGGGAGAGGGTAAAAATAAAAAAAGTATTGAAAACATCACGCTTCTCGTCGGCTCTGACTGCGGCATCCTCATCATCATCCATCTCGKCGCTAGCCTCGATCCGCACGAAATTGGGAATCCCGGCTTCTGATGAACCCTCTTCTCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGCGTTAGCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>479 423 40 39 19</canonical_bands>
                <polymorphic_bands>518 423 40 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGGGAGAGGGTAAAAATAAA</pcr_primer_p1>
		<pcr_primer_p2>GAACCTATTCAGAAGCAACCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGGGAGAGGGTAAAAATAAAAAAAGTATTGAAAACATCACGCTTCTCGTCGGCTCTGACTGCGGCATCCTCATCATCATCCATCTCGTCGCTAGCCTCGATCCGCACGAAATTGGGAATCCCGGCTTCTGATGAACCCTCTTCTCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGCGTTAGCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTC</canonical_amplicon>
		<polymorphic_amplicon>GTGGGAGAGGGTAAAAATAAAAAAAGTATTGAAAACATCACGCTTCTCGTCGGCTCTGACTGCGGCATCCTCATCATCATCCATCTCGKCGCTAGCCTCGATCCGCACGAAATTGGGAATCCCGGCTTCTGATGAACCCTCTTCTCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGCGTTAGCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24202</snp_id>
        <super_contig>c000400167.Contig1</super_contig>
        <contig_pos>120280</contig_pos>
        <strand>+</strand>
        <context>CTTTTCATGC[G/T]TTASCCATWT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACCCTCTTCTCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGC</left_flank>
        <right_flank>TTAGCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAAAATGAGCACATATTGAACTCGCGAAACTTTTTAGAAACAGAAAAAAATTTCCCACCTTCCATAAAATTGCCTGCTGCTGCTTTCGATTTTCGAAAAGCTTGTCATTCAAACTTCTGGGGACTTTATCATCATTGGAGAAATTGGGCAATGAACTCTCTGAAAACTCGCTGAATTAATAACGAAAAATAGGTTTTCAAGGCGTGAGAAATGAAAATTTTTCCAACAAAAATAGTTGTATATTTCATTATTCGTTTATTTGCACTTCAATAAATGTAACTTAAAAAATGAAAAAATAAATGAGGGGGGAATGTGGGAGAGGGTAAAAATAAAAAAAGTATTGAAAACATCACGCTTCTCGTCGGCTCTGACTGCGGCATCCTCATCATCATCCATCTCGTCGCTAGCCTCGATCCGCACGAAATTGGGAATCCCGGCTTCTGATGAACCCTCTTCTCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGCGTTAGCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGC</canonical>
            <polymorphic>AACAAAATGAGCACATATTGAACTCGCGAAACTTTTTAGAAACAGAAAAAAATTTCCCACCTTCCATAAAATTGCCTGCTGCTGCTTTCGATTTTCGAAAAGCTTGTCATTCAAACTTCTGGGGACTTTATCATCATTGGAGAAATTGGGCAATGAACTCTCTGAAAACTCGCTGAATTAATAACGAAAAATAGGTTTTCAAGGCGTGAGAAATGAAAATTTTTCCAACAAAAATAGTTGTATATTTCATTATTCGTTTATTTGCACTTCAATAAATGTAACTTAAAAAATGAAAAAATAAATGAGGGGGGAATGTGGGAGAGGGTAAAAATAAAAAAAGTATTGAAAACATCACGCTTCTCGTCGGCTCTGACTGCGGCATCCTCATCATCATCCATCTCGTCGCTAGCCTCGATCCGCACGAAATTGGGAATCCCGGCTTCTGATGAACCCTCTTCTCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGCKTTAGCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGGAGAGGGTAAAAATAAA</pcr_primer_p1>
		<pcr_primer_p2>GAACCTATTCAGAAGCAACCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGGGAGAGGGTAAAAATAAAAAAAGTATTGAAAACATCACGCTTCTCGTCGGCTCTGACTGCGGCATCCTCATCATCATCCATCTCGTCGCTAGCCTCGATCCGCACGAAATTGGGAATCCCGGCTTCTGATGAACCCTCTTCTCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGCGTTAGCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTC</canonical_amplicon>
		<polymorphic_amplicon>GTGGGAGAGGGTAAAAATAAAAAAAGTATTGAAAACATCACGCTTCTCGTCGGCTCTGACTGCGGCATCCTCATCATCATCCATCTCGTCGCTAGCCTCGATCCGCACGAAATTGGGAATCCCGGCTTCTGATGAACCCTCTTCTCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGCKTTAGCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24203</snp_id>
        <super_contig>c000400167.Contig1</super_contig>
        <contig_pos>120284</contig_pos>
        <strand>+</strand>
        <context>TCATGCKTTA[C/G]CCATWTTTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCTTCTCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGCGTTA</left_flank>
        <right_flank>CCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATGAGCACATATTGAACTCGCGAAACTTTTTAGAAACAGAAAAAAATTTCCCACCTTCCATAAAATTGCCTGCTGCTGCTTTCGATTTTCGAAAAGCTTGTCATTCAAACTTCTGGGGACTTTATCATCATTGGAGAAATTGGGCAATGAACTCTCTGAAAACTCGCTGAATTAATAACGAAAAATAGGTTTTCAAGGCGTGAGAAATGAAAATTTTTCCAACAAAAATAGTTGTATATTTCATTATTCGTTTATTTGCACTTCAATAAATGTAACTTAAAAAATGAAAAAATAAATGAGGGGGGAATGTGGGAGAGGGTAAAAATAAAAAAAGTATTGAAAACATCACGCTTCTCGTCGGCTCTGACTGCGGCATCCTCATCATCATCCATCTCGTCGCTAGCCTCGATCCGCACGAAATTGGGAATCCCGGCTTCTGATGAACCCTCTTCTCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGCGTTAGCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACA</canonical>
            <polymorphic>AAATGAGCACATATTGAACTCGCGAAACTTTTTAGAAACAGAAAAAAATTTCCCACCTTCCATAAAATTGCCTGCTGCTGCTTTCGATTTTCGAAAAGCTTGTCATTCAAACTTCTGGGGACTTTATCATCATTGGAGAAATTGGGCAATGAACTCTCTGAAAACTCGCTGAATTAATAACGAAAAATAGGTTTTCAAGGCGTGAGAAATGAAAATTTTTCCAACAAAAATAGTTGTATATTTCATTATTCGTTTATTTGCACTTCAATAAATGTAACTTAAAAAATGAAAAAATAAATGAGGGGGGAATGTGGGAGAGGGTAAAAATAAAAAAAGTATTGAAAACATCACGCTTCTCGTCGGCTCTGACTGCGGCATCCTCATCATCATCCATCTCGTCGCTAGCCTCGATCCGCACGAAATTGGGAATCCCGGCTTCTGATGAACCCTCTTCTCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGCGTTASCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>265 139 104 98 76 53 49 42 33 30 25 24 17 16 12 12 5</canonical_bands>
                <polymorphic_bands>265 139 120 98 76 53 49 42 33 30 25 24 17 12 12 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGGGAGAGGGTAAAAATAAA</pcr_primer_p1>
		<pcr_primer_p2>GAACCTATTCAGAAGCAACCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGGGAGAGGGTAAAAATAAAAAAAGTATTGAAAACATCACGCTTCTCGTCGGCTCTGACTGCGGCATCCTCATCATCATCCATCTCGTCGCTAGCCTCGATCCGCACGAAATTGGGAATCCCGGCTTCTGATGAACCCTCTTCTCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGCGTTAGCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTC</canonical_amplicon>
		<polymorphic_amplicon>GTGGGAGAGGGTAAAAATAAAAAAAGTATTGAAAACATCACGCTTCTCGTCGGCTCTGACTGCGGCATCCTCATCATCATCCATCTCGTCGCTAGCCTCGATCCGCACGAAATTGGGAATCCCGGCTTCTGATGAACCCTCTTCTCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGCGTTASCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24204</snp_id>
        <super_contig>c000400167.Contig1</super_contig>
        <contig_pos>120289</contig_pos>
        <strand>+</strand>
        <context>CKTTASCCAT[A/T]TTTGGCGCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGCGTTAGCCAT</left_flank>
        <right_flank>TTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCACATATTGAACTCGCGAAACTTTTTAGAAACAGAAAAAAATTTCCCACCTTCCATAAAATTGCCTGCTGCTGCTTTCGATTTTCGAAAAGCTTGTCATTCAAACTTCTGGGGACTTTATCATCATTGGAGAAATTGGGCAATGAACTCTCTGAAAACTCGCTGAATTAATAACGAAAAATAGGTTTTCAAGGCGTGAGAAATGAAAATTTTTCCAACAAAAATAGTTGTATATTTCATTATTCGTTTATTTGCACTTCAATAAATGTAACTTAAAAAATGAAAAAATAAATGAGGGGGGAATGTGGGAGAGGGTAAAAATAAAAAAAGTATTGAAAACATCACGCTTCTCGTCGGCTCTGACTGCGGCATCCTCATCATCATCCATCTCGTCGCTAGCCTCGATCCGCACGAAATTGGGAATCCCGGCTTCTGATGAACCCTCTTCTCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGCGTTAGCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGA</canonical>
            <polymorphic>AGCACATATTGAACTCGCGAAACTTTTTAGAAACAGAAAAAAATTTCCCACCTTCCATAAAATTGCCTGCTGCTGCTTTCGATTTTCGAAAAGCTTGTCATTCAAACTTCTGGGGACTTTATCATCATTGGAGAAATTGGGCAATGAACTCTCTGAAAACTCGCTGAATTAATAACGAAAAATAGGTTTTCAAGGCGTGAGAAATGAAAATTTTTCCAACAAAAATAGTTGTATATTTCATTATTCGTTTATTTGCACTTCAATAAATGTAACTTAAAAAATGAAAAAATAAATGAGGGGGGAATGTGGGAGAGGGTAAAAATAAAAAAAGTATTGAAAACATCACGCTTCTCGTCGGCTCTGACTGCGGCATCCTCATCATCATCCATCTCGTCGCTAGCCTCGATCCGCACGAAATTGGGAATCCCGGCTTCTGATGAACCCTCTTCTCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGCGTTAGCCATWTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGGAGAGGGTAAAAATAAA</pcr_primer_p1>
		<pcr_primer_p2>GAACCTATTCAGAAGCAACCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGGGAGAGGGTAAAAATAAAAAAAGTATTGAAAACATCACGCTTCTCGTCGGCTCTGACTGCGGCATCCTCATCATCATCCATCTCGTCGCTAGCCTCGATCCGCACGAAATTGGGAATCCCGGCTTCTGATGAACCCTCTTCTCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGCGTTAGCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTC</canonical_amplicon>
		<polymorphic_amplicon>GTGGGAGAGGGTAAAAATAAAAAAAGTATTGAAAACATCACGCTTCTCGTCGGCTCTGACTGCGGCATCCTCATCATCATCCATCTCGTCGCTAGCCTCGATCCGCACGAAATTGGGAATCCCGGCTTCTGATGAACCCTCTTCTCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGCGTTAGCCATWTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24205</snp_id>
        <super_contig>c000400167.Contig1</super_contig>
        <contig_pos>120353</contig_pos>
        <strand>+</strand>
        <context>TCAGTCAGTC[G/T]TTCTGTCGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTC</left_flank>
        <right_flank>TTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCTGCTGCTGCTTTCGATTTTCGAAAAGCTTGTCATTCAAACTTCTGGGGACTTTATCATCATTGGAGAAATTGGGCAATGAACTCTCTGAAAACTCGCTGAATTAATAACGAAAAATAGGTTTTCAAGGCGTGAGAAATGAAAATTTTTCCAACAAAAATAGTTGTATATTTCATTATTCGTTTATTTGCACTTCAATAAATGTAACTTAAAAAATGAAAAAATAAATGAGGGGGGAATGTGGGAGAGGGTAAAAATAAAAAAAGTATTGAAAACATCACGCTTCTCGTCGGCTCTGACTGCGGCATCCTCATCATCATCCATCTCGTCGCTAGCCTCGATCCGCACGAAATTGGGAATCCCGGCTTCTGATGAACCCTCTTCTCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGCGTTAGCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTT</canonical>
            <polymorphic>GCCTGCTGCTGCTTTCGATTTTCGAAAAGCTTGTCATTCAAACTTCTGGGGACTTTATCATCATTGGAGAAATTGGGCAATGAACTCTCTGAAAACTCGCTGAATTAATAACGAAAAATAGGTTTTCAAGGCGTGAGAAATGAAAATTTTTCCAACAAAAATAGTTGTATATTTCATTATTCGTTTATTTGCACTTCAATAAATGTAACTTAAAAAATGAAAAAATAAATGAGGGGGGAATGTGGGAGAGGGTAAAAATAAAAAAAGTATTGAAAACATCACGCTTCTCGTCGGCTCTGACTGCGGCATCCTCATCATCATCCATCTCGTCGCTAGCCTCGATCCGCACGAAATTGGGAATCCCGGCTTCTGATGAACCCTCTTCTCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGCGTTAGCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTCKTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTGATGAACCCTCTTCTC</pcr_primer_p1>
		<pcr_primer_p2>GCAAAGCATCTCTTCTACAACTA</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>CTTCTGATGAACCCTCTTCTCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGCGTTAGCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGC</canonical_amplicon>
		<polymorphic_amplicon>CTTCTGATGAACCCTCTTCTCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGCGTTAGCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTCKTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24206</snp_id>
        <super_contig>c000400167.Contig1</super_contig>
        <contig_pos>120373</contig_pos>
        <strand>+</strand>
        <context>CTTAACACAA[A/G]AAATGACTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAA</left_flank>
        <right_flank>AAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGAAAAGCTTGTCATTCAAACTTCTGGGGACTTTATCATCATTGGAGAAATTGGGCAATGAACTCTCTGAAAACTCGCTGAATTAATAACGAAAAATAGGTTTTCAAGGCGTGAGAAATGAAAATTTTTCCAACAAAAATAGTTGTATATTTCATTATTCGTTTATTTGCACTTCAATAAATGTAACTTAAAAAATGAAAAAATAAATGAGGGGGGAATGTGGGAGAGGGTAAAAATAAAAAAAGTATTGAAAACATCACGCTTCTCGTCGGCTCTGACTGCGGCATCCTCATCATCATCCATCTCGTCGCTAGCCTCGATCCGCACGAAATTGGGAATCCCGGCTTCTGATGAACCCTCTTCTCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGCGTTAGCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGA</canonical>
            <polymorphic>TTCGAAAAGCTTGTCATTCAAACTTCTGGGGACTTTATCATCATTGGAGAAATTGGGCAATGAACTCTCTGAAAACTCGCTGAATTAATAACGAAAAATAGGTTTTCAAGGCGTGAGAAATGAAAATTTTTCCAACAAAAATAGTTGTATATTTCATTATTCGTTTATTTGCACTTCAATAAATGTAACTTAAAAAATGAAAAAATAAATGAGGGGGGAATGTGGGAGAGGGTAAAAATAAAAAAAGTATTGAAAACATCACGCTTCTCGTCGGCTCTGACTGCGGCATCCTCATCATCATCCATCTCGTCGCTAGCCTCGATCCGCACGAAATTGGGAATCCCGGCTTCTGATGAACCCTCTTCTCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGCGTTAGCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAARAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGTTGCTTCTGAATAGGTT</pcr_primer_p1>
		<pcr_primer_p2>CATTCGTGAAAAAGTCATTAACTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATG</canonical_amplicon>
		<polymorphic_amplicon>GAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAARAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24207</snp_id>
        <super_contig>c000400167.Contig1</super_contig>
        <contig_pos>120405</contig_pos>
        <strand>+</strand>
        <context>TGGTGCTTTA[A/G]CGTTTTTCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTA</left_flank>
        <right_flank>CGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTATCATCATTGGAGAAATTGGGCAATGAACTCTCTGAAAACTCGCTGAATTAATAACGAAAAATAGGTTTTCAAGGCGTGAGAAATGAAAATTTTTCCAACAAAAATAGTTGTATATTTCATTATTCGTTTATTTGCACTTCAATAAATGTAACTTAAAAAATGAAAAAATAAATGAGGGGGGAATGTGGGAGAGGGTAAAAATAAAAAAAGTATTGAAAACATCACGCTTCTCGTCGGCTCTGACTGCGGCATCCTCATCATCATCCATCTCGTCGCTAGCCTCGATCCGCACGAAATTGGGAATCCCGGCTTCTGATGAACCCTCTTCTCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGCGTTAGCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAA</canonical>
            <polymorphic>CTTTATCATCATTGGAGAAATTGGGCAATGAACTCTCTGAAAACTCGCTGAATTAATAACGAAAAATAGGTTTTCAAGGCGTGAGAAATGAAAATTTTTCCAACAAAAATAGTTGTATATTTCATTATTCGTTTATTTGCACTTCAATAAATGTAACTTAAAAAATGAAAAAATAAATGAGGGGGGAATGTGGGAGAGGGTAAAAATAAAAAAAGTATTGAAAACATCACGCTTCTCGTCGGCTCTGACTGCGGCATCCTCATCATCATCCATCTCGTCGCTAGCCTCGATCCGCACGAAATTGGGAATCCCGGCTTCTGATGAACCCTCTTCTCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGCGTTAGCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTARCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTGAATAGGTTCAGTCAGTC</pcr_primer_p1>
		<pcr_primer_p2>CATTCGTGAAAAAGTCATTAACTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATG</canonical_amplicon>
		<polymorphic_amplicon>CTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTARCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24208</snp_id>
        <super_contig>c000400167.Contig1</super_contig>
        <contig_pos>120464</contig_pos>
        <strand>+</strand>
        <context>TCGTCTTGGA[G/T]CCGACTTCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGA</left_flank>
        <right_flank>CCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAAAAATAGGTTTTCAAGGCGTGAGAAATGAAAATTTTTCCAACAAAAATAGTTGTATATTTCATTATTCGTTTATTTGCACTTCAATAAATGTAACTTAAAAAATGAAAAAATAAATGAGGGGGGAATGTGGGAGAGGGTAAAAATAAAAAAAGTATTGAAAACATCACGCTTCTCGTCGGCTCTGACTGCGGCATCCTCATCATCATCCATCTCGTCGCTAGCCTCGATCCGCACGAAATTGGGAATCCCGGCTTCTGATGAACCCTCTTCTCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGCGTTAGCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATA</canonical>
            <polymorphic>CGAAAAATAGGTTTTCAAGGCGTGAGAAATGAAAATTTTTCCAACAAAAATAGTTGTATATTTCATTATTCGTTTATTTGCACTTCAATAAATGTAACTTAAAAAATGAAAAAATAAATGAGGGGGGAATGTGGGAGAGGGTAAAAATAAAAAAAGTATTGAAAACATCACGCTTCTCGTCGGCTCTGACTGCGGCATCCTCATCATCATCCATCTCGTCGCTAGCCTCGATCCGCACGAAATTGGGAATCCCGGCTTCTGATGAACCCTCTTCTCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGCGTTAGCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAKCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>185 183 139 104 76 53 49 42 33 30 25 24 17 16 12 12</canonical_bands>
                <polymorphic_bands>215 185 183 104 53 49 42 33 30 25 24 17 16 12 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCTGAATAGGTTCAGTCAGTC</pcr_primer_p1>
		<pcr_primer_p2>CATTCGTGAAAAAGTCATTAACTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATG</canonical_amplicon>
		<polymorphic_amplicon>CTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAKCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24209</snp_id>
        <super_contig>c000400167.Contig1</super_contig>
        <contig_pos>120705</contig_pos>
        <strand>+</strand>
        <context>TCTTCCAACG[C/T]KTTGGCTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACG</left_flank>
        <right_flank>GTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGGGAATCCCGGCTTCTGATGAACCCTCTTCTCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGCGTTAGCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTTCTGTTAGGTCGTCGAAACAAGAACTGAGCTAGAGGTATGATGGGGACGTGTGAAGAAACGCAAATTGGTTATATCCGGGCAGGCAATGACCCTAAATTTGTAGATGTCCTCGAGGGAGAGATTGAGAGAAAAAGAAACAGCGCAAAGTTTTAACCATAACTTTGTTCATTTCTGAAGTTGTGAAATATATATTTCAGTTTTGAATTCCTTAAGATAAGAGCTTAAGA</canonical>
            <polymorphic>ATTGGGAATCCCGGCTTCTGATGAACCCTCTTCTCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGCGTTAGCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGYGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTTCTGTTAGGTCGTCGAAACAAGAACTGAGCTAGAGGTATGATGGGGACGTGTGAAGAAACGCAAATTGGTTATATCCGGGCAGGCAATGACCCTAAATTTGTAGATGTCCTCGAGGGAGAGATTGAGAGAAAAAGAAACAGCGCAAAGTTTTAACCATAACTTTGTTCATTTCTGAAGTTGTGAAATATATATTTCAGTTTTGAATTCCTTAAGATAAGAGCTTAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>497 322 181</canonical_bands>
                <polymorphic_bands>819 181</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>164 146 130 76 68 67 45 44 42 38 37 34 32 16 15 14 9 8 7 6 2</canonical_bands>
                <polymorphic_bands>164 146 130 76 68 67 46 45 44 42 38 34 32 16 15 14 8 7 6 2</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>497 268 181 54</canonical_bands>
                <polymorphic_bands>765 181 54</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACCAAGACTGGATCTCTGTAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAAAATTCGAAAGTGAC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGYGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24210</snp_id>
        <super_contig>c000400167.Contig1</super_contig>
        <contig_pos>120706</contig_pos>
        <strand>+</strand>
        <context>CTTCCAACGY[G/T]TTGGCTCCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGT</left_flank>
        <right_flank>TTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGGAATCCCGGCTTCTGATGAACCCTCTTCTCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGCGTTAGCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTTCTGTTAGGTCGTCGAAACAAGAACTGAGCTAGAGGTATGATGGGGACGTGTGAAGAAACGCAAATTGGTTATATCCGGGCAGGCAATGACCCTAAATTTGTAGATGTCCTCGAGGGAGAGATTGAGAGAAAAAGAAACAGCGCAAAGTTTTAACCATAACTTTGTTCATTTCTGAAGTTGTGAAATATATATTTCAGTTTTGAATTCCTTAAGATAAGAGCTTAAGAA</canonical>
            <polymorphic>TTGGGAATCCCGGCTTCTGATGAACCCTCTTCTCAATTGCTCCAAATGCTCTTCGAAGACGGCCTTTTCATGCGTTAGCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTKTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTTCTGTTAGGTCGTCGAAACAAGAACTGAGCTAGAGGTATGATGGGGACGTGTGAAGAAACGCAAATTGGTTATATCCGGGCAGGCAATGACCCTAAATTTGTAGATGTCCTCGAGGGAGAGATTGAGAGAAAAAGAAACAGCGCAAAGTTTTAACCATAACTTTGTTCATTTCTGAAGTTGTGAAATATATATTTCAGTTTTGAATTCCTTAAGATAAGAGCTTAAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>496 322 182</canonical_bands>
                <polymorphic_bands>818 182</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>163 146 130 76 68 67 46 44 42 38 37 34 32 16 15 14 9 8 7 6 2</canonical_bands>
                <polymorphic_bands>163 146 130 76 68 67 46 46 44 42 38 34 32 16 15 14 8 7 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACCAAGACTGGATCTCTGTAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAAAATTCGAAAGTGAC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTKTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24211</snp_id>
        <super_contig>c000400167.Contig1</super_contig>
        <contig_pos>120767</contig_pos>
        <strand>+</strand>
        <context>ACTAGGGTTT[C/T]TCATTTTARC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTT</left_flank>
        <right_flank>TCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCTTTTCATGCGTTAGCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTTCTGTTAGGTCGTCGAAACAAGAACTGAGCTAGAGGTATGATGGGGACGTGTGAAGAAACGCAAATTGGTTATATCCGGGCAGGCAATGACCCTAAATTTGTAGATGTCCTCGAGGGAGAGATTGAGAGAAAAAGAAACAGCGCAAAGTTTTAACCATAACTTTGTTCATTTCTGAAGTTGTGAAATATATATTTCAGTTTTGAATTCCTTAAGATAAGAGCTTAAGAATAAGTAAGCATGCCCAAGTTTGGCGAAAATTGGAATTGACTTCGAAGGCGTCTAAAAGATT</canonical>
            <polymorphic>GCCTTTTCATGCGTTAGCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTYTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTTCTGTTAGGTCGTCGAAACAAGAACTGAGCTAGAGGTATGATGGGGACGTGTGAAGAAACGCAAATTGGTTATATCCGGGCAGGCAATGACCCTAAATTTGTAGATGTCCTCGAGGGAGAGATTGAGAGAAAAAGAAACAGCGCAAAGTTTTAACCATAACTTTGTTCATTTCTGAAGTTGTGAAATATATATTTCAGTTTTGAATTCCTTAAGATAAGAGCTTAAGAATAAGTAAGCATGCCCAAGTTTGGCGAAAATTGGAATTGACTTCGAAGGCGTCTAAAAGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACCAAGACTGGATCTCTGTAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAAAATTCGAAAGTGAC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTYTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24212</snp_id>
        <super_contig>c000400167.Contig1</super_contig>
        <contig_pos>120776</contig_pos>
        <strand>+</strand>
        <context>TYTCATTTTA[A/G]CAGCCACAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTA</left_flank>
        <right_flank>CAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCGTTAGCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTTCTGTTAGGTCGTCGAAACAAGAACTGAGCTAGAGGTATGATGGGGACGTGTGAAGAAACGCAAATTGGTTATATCCGGGCAGGCAATGACCCTAAATTTGTAGATGTCCTCGAGGGAGAGATTGAGAGAAAAAGAAACAGCGCAAAGTTTTAACCATAACTTTGTTCATTTCTGAAGTTGTGAAATATATATTTCAGTTTTGAATTCCTTAAGATAAGAGCTTAAGAATAAGTAAGCATGCCCAAGTTTGGCGAAAATTGGAATTGACTTCGAAGGCGTCTAAAAGATTGCAAAGAGA</canonical>
            <polymorphic>TGCGTTAGCCATTTTTGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTARCAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTTCTGTTAGGTCGTCGAAACAAGAACTGAGCTAGAGGTATGATGGGGACGTGTGAAGAAACGCAAATTGGTTATATCCGGGCAGGCAATGACCCTAAATTTGTAGATGTCCTCGAGGGAGAGATTGAGAGAAAAAGAAACAGCGCAAAGTTTTAACCATAACTTTGTTCATTTCTGAAGTTGTGAAATATATATTTCAGTTTTGAATTCCTTAAGATAAGAGCTTAAGAATAAGTAAGCATGCCCAAGTTTGGCGAAAATTGGAATTGACTTCGAAGGCGTCTAAAAGATTGCAAAGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>272 219 190 88 83 76 59 13</canonical_bands>
                <polymorphic_bands>302 272 190 88 76 59 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACCAAGACTGGATCTCTGTAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAAAATTCGAAAGTGAC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTARCAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24213</snp_id>
        <super_contig>c000400167.Contig1</super_contig>
        <contig_pos>120791</contig_pos>
        <strand>+</strand>
        <context>CACAATTGAT[A/G]AGGTAGTCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGAT</left_flank>
        <right_flank>AGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTTCTGTTAGGTCGTCGAAACAAGAACTGAGCTAGAGGTATGATGGGGACGTGTGAAGAAACGCAAATTGGTTATATCCGGGCAGGCAATGACCCTAAATTTGTAGATGTCCTCGAGGGAGAGATTGAGAGAAAAAGAAACAGCGCAAAGTTTTAACCATAACTTTGTTCATTTCTGAAGTTGTGAAATATATATTTCAGTTTTGAATTCCTTAAGATAAGAGCTTAAGAATAAGTAAGCATGCCCAAGTTTGGCGAAAATTGGAATTGACTTCGAAGGCGTCTAAAAGATTGCAAAGAGAAACGTTTCGGTCGAT</canonical>
            <polymorphic>TGGCGCGGAGAGAGGTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATRAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTTCTGTTAGGTCGTCGAAACAAGAACTGAGCTAGAGGTATGATGGGGACGTGTGAAGAAACGCAAATTGGTTATATCCGGGCAGGCAATGACCCTAAATTTGTAGATGTCCTCGAGGGAGAGATTGAGAGAAAAAGAAACAGCGCAAAGTTTTAACCATAACTTTGTTCATTTCTGAAGTTGTGAAATATATATTTCAGTTTTGAATTCCTTAAGATAAGAGCTTAAGAATAAGTAAGCATGCCCAAGTTTGGCGAAAATTGGAATTGACTTCGAAGGCGTCTAAAAGATTGCAAAGAGAAACGTTTCGGTCGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGTGGCTCTTTCTGTTTG</pcr_primer_p1>
		<pcr_primer_p2>AACGGACGTCTAAATATCCAC</pcr_primer_p2>
		<pcr_amplicon_size>357</pcr_amplicon_size>
		<canonical_amplicon>CAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTT</canonical_amplicon>
		<polymorphic_amplicon>CAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATRAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24214</snp_id>
        <super_contig>c000400167.Contig1</super_contig>
        <contig_pos>120805</contig_pos>
        <strand>+</strand>
        <context>TAGTCTGGGG[A/T]GCARCGTCAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGG</left_flank>
        <right_flank>GCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTTCTGTTAGGTCGTCGAAACAAGAACTGAGCTAGAGGTATGATGGGGACGTGTGAAGAAACGCAAATTGGTTATATCCGGGCAGGCAATGACCCTAAATTTGTAGATGTCCTCGAGGGAGAGATTGAGAGAAAAAGAAACAGCGCAAAGTTTTAACCATAACTTTGTTCATTTCTGAAGTTGTGAAATATATATTTCAGTTTTGAATTCCTTAAGATAAGAGCTTAAGAATAAGTAAGCATGCCCAAGTTTGGCGAAAATTGGAATTGACTTCGAAGGCGTCTAAAAGATTGCAAAGAGAAACGTTTCGGTCGATTTGCACCTTCTTTC</canonical>
            <polymorphic>GTTGCATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGWGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTTCTGTTAGGTCGTCGAAACAAGAACTGAGCTAGAGGTATGATGGGGACGTGTGAAGAAACGCAAATTGGTTATATCCGGGCAGGCAATGACCCTAAATTTGTAGATGTCCTCGAGGGAGAGATTGAGAGAAAAAGAAACAGCGCAAAGTTTTAACCATAACTTTGTTCATTTCTGAAGTTGTGAAATATATATTTCAGTTTTGAATTCCTTAAGATAAGAGCTTAAGAATAAGTAAGCATGCCCAAGTTTGGCGAAAATTGGAATTGACTTCGAAGGCGTCTAAAAGATTGCAAAGAGAAACGTTTCGGTCGATTTGCACCTTCTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGGCTCTTCTTTTACTAGG</pcr_primer_p1>
		<pcr_primer_p2>CTAACAGAACGGACGTCTAAATA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTTCTGTTAG</canonical_amplicon>
		<polymorphic_amplicon>GCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGWGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTTCTGTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24215</snp_id>
        <super_contig>c000400167.Contig1</super_contig>
        <contig_pos>120809</contig_pos>
        <strand>+</strand>
        <context>CTGGGGWGCA[A/G]CGTCACTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCA</left_flank>
        <right_flank>CGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTTCTGTTAGGTCGTCGAAACAAGAACTGAGCTAGAGGTATGATGGGGACGTGTGAAGAAACGCAAATTGGTTATATCCGGGCAGGCAATGACCCTAAATTTGTAGATGTCCTCGAGGGAGAGATTGAGAGAAAAAGAAACAGCGCAAAGTTTTAACCATAACTTTGTTCATTTCTGAAGTTGTGAAATATATATTTCAGTTTTGAATTCCTTAAGATAAGAGCTTAAGAATAAGTAAGCATGCCCAAGTTTGGCGAAAATTGGAATTGACTTCGAAGGCGTCTAAAAGATTGCAAAGAGAAACGTTTCGGTCGATTTGCACCTTCTTTCTGAA</canonical>
            <polymorphic>CATTTGGCGCGGAGAGGTTGCTTCTGAATAGGTTCAGTCAGTCTTTCTGTCGTCTTAACACAAAAAATGACTCACCGAGCTCGTTTGGTGCTTTAGCGTTTTTCACAACTCGGAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCARCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTTCTGTTAGGTCGTCGAAACAAGAACTGAGCTAGAGGTATGATGGGGACGTGTGAAGAAACGCAAATTGGTTATATCCGGGCAGGCAATGACCCTAAATTTGTAGATGTCCTCGAGGGAGAGATTGAGAGAAAAAGAAACAGCGCAAAGTTTTAACCATAACTTTGTTCATTTCTGAAGTTGTGAAATATATATTTCAGTTTTGAATTCCTTAAGATAAGAGCTTAAGAATAAGTAAGCATGCCCAAGTTTGGCGAAAATTGGAATTGACTTCGAAGGCGTCTAAAAGATTGCAAAGAGAAACGTTTCGGTCGATTTGCACCTTCTTTCTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 348 89 63</canonical_bands>
                <polymorphic_bands>563 348 89</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>503 345 152</canonical_bands>
                <polymorphic_bands>655 345</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGGCTCTTCTTTTACTAGG</pcr_primer_p1>
		<pcr_primer_p2>CTAACAGAACGGACGTCTAAATA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTTCTGTTAG</canonical_amplicon>
		<polymorphic_amplicon>GCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCARCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTTCTGTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24216</snp_id>
        <super_contig>c000400167.Contig1</super_contig>
        <contig_pos>120921</contig_pos>
        <strand>+</strand>
        <context>gaaccttcca[C/G]aatccgttca</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCA</left_flank>
        <right_flank>AATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATATTTAGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTTCTGTTAGGTCGTCGAAACAAGAACTGAGCTAGAGGTATGATGGGGACGTGTGAAGAAACGCAAATTGGTTATATCCGGGCAGGCAATGACCCTAAATTTGTAGATGTCCTCGAGGGAGAGATTGAGAGAAAAAGAAACAGCGCAAAGTTTTAACCATAACTTTGTTCATTTCTGAAGTTGTGAAATATATATTTCAGTTTTGAATTCCTTAAGATAAGAGCTTAAGAATAAGTAAGCATGCCCAAGTTTGGCGAAAATTGGAATTGACTTCGAAGGCGTCTAAAAGATTGCAAAGAGAAACGTTTCGGTCGATTTGCACCTTCTTTCTGAAATTATTCTATAAAACGCTTTCCACCCAGACAAGTTTTCCGAAATTTGGTTTTCTGAAAATTTCCTATTGAAAATTTTTCCGAAAGTTTCCTACAAAACACGAATTTTCAACT</canonical>
            <polymorphic>GAGATAGTTGTAGAAGAGATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCASAATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTTCTGTTAGGTCGTCGAAACAAGAACTGAGCTAGAGGTATGATGGGGACGTGTGAAGAAACGCAAATTGGTTATATCCGGGCAGGCAATGACCCTAAATTTGTAGATGTCCTCGAGGGAGAGATTGAGAGAAAAAGAAACAGCGCAAAGTTTTAACCATAACTTTGTTCATTTCTGAAGTTGTGAAATATATATTTCAGTTTTGAATTCCTTAAGATAAGAGCTTAAGAATAAGTAAGCATGCCCAAGTTTGGCGAAAATTGGAATTGACTTCGAAGGCGTCTAAAAGATTGCAAAGAGAAACGTTTCGGTCGATTTGCACCTTCTTTCTGAAATTATTCTATAAAACGCTTTCCACCCAGACAAGTTTTCCGAAATTTGGTTTTCTGAAAATTTCCTATTGAAAATTTTTCCGAAAGTTTCCTACAAAACACGAATTTTCAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>504 354 110 32</canonical_bands>
                <polymorphic_bands>858 110 32</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>500 304 196</canonical_bands>
                <polymorphic_bands>696 304</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>476 351 95 51 27</canonical_bands>
                <polymorphic_bands>476 378 95 51</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 304 196</canonical_bands>
                <polymorphic_bands>696 304</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGGCTCTTCTTTTACTAGG</pcr_primer_p1>
		<pcr_primer_p2>CTAACAGAACGGACGTCTAAATA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTTCTGTTAG</canonical_amplicon>
		<polymorphic_amplicon>GCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCASAATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTTCTGTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24217</snp_id>
        <super_contig>c000400167.Contig1</super_contig>
        <contig_pos>120938</contig_pos>
        <strand></strand>
        <context>ttcattcaaa[A/G]gattttcaag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAA</left_flank>
        <right_flank>GATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTTCTGTTAGGTC</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTTCTGTTAGGTCGTCGAAACAAGAACTGAGCTAGAGGTATGATGGGGACGTGTGAAGAAACGCAAATTGGTTATATCCGGGCAGGCAATGACCCTAAATTTGTAGATGTCCTCGAGGGAGAGATTGAGAGAAAAAGAAACAGCGCAAAGTTTTAACCATAACTTTGTTCATTTCTGAAGTTGTGAAATATATATTTCAGTTTTGAATTCCTTAAGATAAGAGCTTAAGAATAAGTAAGCATGCCCAAGTTTGGCGAAAATTGGAATTGACTTCGAAGGCGTCTAAAAGATTGCAAAGAGAAACGTTTCGGTCGATTTGCACCTTCTTTCTGAAATTATTCTATAAAACGCTTTCCACCCAGACAAGTTTTCCGAAATTTGGTTTTCTGAAAATTTCCTATTGAAAATTTTTCCGAAAGTTTCCTACAAAACACGAATTTTCAACTGATTCTTCAATTAGTTG</canonical>
            <polymorphic>GATGCTTTGCCATTTTCGTCTTGGAGCCGACTTCTTGAGGCATGTTCTTGCACCTCTTTTTGGGATTGTAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAARGATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTTCTGTTAGGTCGTCGAAACAAGAACTGAGCTAGAGGTATGATGGGGACGTGTGAAGAAACGCAAATTGGTTATATCCGGGCAGGCAATGACCCTAAATTTGTAGATGTCCTCGAGGGAGAGATTGAGAGAAAAAGAAACAGCGCAAAGTTTTAACCATAACTTTGTTCATTTCTGAAGTTGTGAAATATATATTTCAGTTTTGAATTCCTTAAGATAAGAGCTTAAGAATAAGTAAGCATGCCCAAGTTTGGCGAAAATTGGAATTGACTTCGAAGGCGTCTAAAAGATTGCAAAGAGAAACGTTTCGGTCGATTTGCACCTTCTTTCTGAAATTATTCTATAAAACGCTTTCCACCCAGACAAGTTTTCCGAAATTTGGTTTTCTGAAAATTTCCTATTGAAAATTTTTCCGAAAGTTTCCTACAAAACACGAATTTTCAACTGATTCTTCAATTAGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGGCTCTTCTTTTACTAGG</pcr_primer_p1>
		<pcr_primer_p2>TTTCGACGACCTAACAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTTCTGTTAGGTCGTCGAAA</canonical_amplicon>
		<polymorphic_amplicon>GCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAARGATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTTCTGTTAGGTCGTCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24218</snp_id>
        <super_contig>c000400167.Contig1</super_contig>
        <contig_pos>121006</contig_pos>
        <strand>+</strand>
        <context>CAAGAACTGA[G/T]CTAGAGGTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCGTGGATATTTAGACGTCCGTTCTGTTAGGTCGTCGAAACAAGAACTGA</left_flank>
        <right_flank>CTAGAGGTATGATGGGGACGTGTGAAGAAACGCAAATTGGTTATATCCGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTTCTGTTAGGTCGTCGAAACAAGAACTGAGCTAGAGGTATGATGGGGACGTGTGAAGAAACGCAAATTGGTTATATCCGGGCAGGCAATGACCCTAAATTTGTAGATGTCCTCGAGGGAGAGATTGAGAGAAAAAGAAACAGCGCAAAGTTTTAACCATAACTTTGTTCATTTCTGAAGTTGTGAAATATATATTTCAGTTTTGAATTCCTTAAGATAAGAGCTTAAGAATAAGTAAGCATGCCCAAGTTTGGCGAAAATTGGAATTGACTTCGAAGGCGTCTAAAAGATTGCAAAGAGAAACGTTTCGGTCGATTTGCACCTTCTTTCTGAAATTATTCTATAAAACGCTTTCCACCCAGACAAGTTTTCCGAAATTTGGTTTTCTGAAAATTTCCTATTGAAAATTTTTCCGAAAGTTTCCTACAAAACACGAATTTTCAACTGATTCTTCAATTAGTTGGAGCTTTTCCGTCAGTTCATCAAAGTTTCAGGAGAAGGGGCGGAGCATACGAGGACAATTTGGCTTCG</canonical>
            <polymorphic>TAGAGGATGAGGATAGTGATTTTACCTGGAATAACATTATAAATTAGTTAATGACTTTTTCACGAATGCACTTACCAAGACTGGATCTCTGTAGAAGCTTCATCGGTGCCTTCCACAAGTGGCTCTTTCTGTTTGCTGGCCTTCCTCGCAGCTCGACGCTTCACTCGTTCGGTCTTCGATGCTCCGTTTCTTCCAACGTGTTGGCTCCACCGGTCATAGATTCCATGGCTCGTTGGGCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTTCTGTTAGGTCGTCGAAACAAGAACTGAKCTAGAGGTATGATGGGGACGTGTGAAGAAACGCAAATTGGTTATATCCGGGCAGGCAATGACCCTAAATTTGTAGATGTCCTCGAGGGAGAGATTGAGAGAAAAAGAAACAGCGCAAAGTTTTAACCATAACTTTGTTCATTTCTGAAGTTGTGAAATATATATTTCAGTTTTGAATTCCTTAAGATAAGAGCTTAAGAATAAGTAAGCATGCCCAAGTTTGGCGAAAATTGGAATTGACTTCGAAGGCGTCTAAAAGATTGCAAAGAGAAACGTTTCGGTCGATTTGCACCTTCTTTCTGAAATTATTCTATAAAACGCTTTCCACCCAGACAAGTTTTCCGAAATTTGGTTTTCTGAAAATTTCCTATTGAAAATTTTTCCGAAAGTTTCCTACAAAACACGAATTTTCAACTGATTCTTCAATTAGTTGGAGCTTTTCCGTCAGTTCATCAAAGTTTCAGGAGAAGGGGCGGAGCATACGAGGACAATTTGGCTTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>349 243 192 97 65 54</canonical_bands>
                <polymorphic_bands>541 243 97 65 54</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>243 227 192 97 60 53 33 25 24 17 12 12 5</canonical_bands>
                <polymorphic_bands>419 243 97 60 53 33 25 24 17 12 12 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGGCTCTTCTTTTACTAGG</pcr_primer_p1>
		<pcr_primer_p2>CATCTACAAATTTAGGGTCATTG</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>GCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTTCTGTTAGGTCGTCGAAACAAGAACTGAGCTAGAGGTATGATGGGGACGTGTGAAGAAACGCAAATTGGTTATATCCGGGCAGGCAATGACCCTAAATTTGTAGATG</canonical_amplicon>
		<polymorphic_amplicon>GCGGCTCTTCTTTTACTAGGGTTTTTCATTTTAACAGCCACAATTGATGAGGTAGTCTGGGGAGCAGCGTCACTTTCGAATTTTCAAAAAAAAAATAAGAAAAAGTCCGTTCATTAATAGGACTATTCGGAATGAATAGGTATAGATATAATTTCAGAAAAAATAAAAGAACCTTCCAGAATCCGTTCATTCAAAAGATTTTCAAGAAAGTTCCCGTGGATATTTAGACGTCCGTTCTGTTAGGTCGTCGAAACAAGAACTGAKCTAGAGGTATGATGGGGACGTGTGAAGAAACGCAAATTGGTTATATCCGGGCAGGCAATGACCCTAAATTTGTAGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24219</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>19567</contig_pos>
        <strand>+</strand>
        <context>GGAAACAGCT[A/G]CGTCAATGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGACAAATTGTACAGAGATTTGAATAACAAGAGTGCATTTGGAAACAGCT</left_flank>
        <right_flank>CGTCAATGAAAACTCCACTTCTCCTTCACCAAAACGAGGATGCTTCTACA</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCTTCAAGAAGAAATTCGTCAGCTCGTACAGCAGCCGCAGGAAATCAGTTAAAAGAGGATAACACACAAGAAGTGACACCGATAGACAACGAAACTGTCAATTTTAACCTGGATGTCAAAGTGAATATCAACAGAGGAACATGCACAGTCAGAACTGGTAAAAAAGAAGGTTCAATGCAAATGGTTATACGTAAGTCATTTGCTGTTGTTCTCTCGCTCAGACAATAATGTTACAGCTGGAGTCAGAGATCCATTAAAACGACTGAATCTGGGAGGAGGTAAAGATTTCAAATCAATGTTCGAACCCCAGGTTATTACAACAACCACCTTCTGTATTCCAAGTGTAGAAATCAAATGCTATCACGTCTCGGATCCTTCAAGTCGTATACCCGATCAATTCAAGCAGGATAAAAAGACAAAGCTATCAAGGGAATCATCTAAAGTTGCGGACAAATTGTACAGAGATTTGAATAACAAGAGTGCATTTGGAAACAGCTGCGTCAATGAAAACTCCACTTCTCCTTCACCAAAACGAGGATGCTTCTACATTTTCGTTGGACTAGCTTCAATGCCAAAAGAAACGGTTGTCACTCCACATTTAGCTACATACCTGGAACAAGTTCTTGAGCCATTACCACCTTCTGCAGTATTCCAGTCTCAAAATACCACTCGAGAAGCATCAGTTATAGATGATGGGAAAGGAGAGGGTAACTTTTCGAAATATATCTAAAAAGAGCCAACCTGATTATTTTTGTAGGAAACAACGAAGTTCACAATATAGTCGCAATGGATACTGCCGCTTTCCCGATAGACTTTATTTTCTACTTGGATGTTCAAAGTTCAACAATCCGGTTTGACGGTAAACAACCGACTTCTAGAAGCCAAGCACAAGCTGATTGTCTTCTCACCCTACCACGGCTCACTCTCGAACTGACTTCAAAACGAACAAAAGATAACATAGACAACTACGTTGGAGGAATTCACATTTCTGGGCAGTT</canonical>
            <polymorphic>CTTCTTCAAGAAGAAATTCGTCAGCTCGTACAGCAGCCGCAGGAAATCAGTTAAAAGAGGATAACACACAAGAAGTGACACCGATAGACAACGAAACTGTCAATTTTAACCTGGATGTCAAAGTGAATATCAACAGAGGAACATGCACAGTCAGAACTGGTAAAAAAGAAGGTTCAATGCAAATGGTTATACGTAAGTCATTTGCTGTTGTTCTCTCGCTCAGACAATAATGTTACAGCTGGAGTCAGAGATCCATTAAAACGACTGAATCTGGGAGGAGGTAAAGATTTCAAATCAATGTTCGAACCCCAGGTTATTACAACAACCACCTTCTGTATTCCAAGTGTAGAAATCAAATGCTATCACGTCTCGGATCCTTCAAGTCGTATACCCGATCAATTCAAGCAGGATAAAAAGACAAAGCTATCAAGGGAATCATCTAAAGTTGCGGACAAATTGTACAGAGATTTGAATAACAAGAGTGCATTTGGAAACAGCTRCGTCAATGAAAACTCCACTTCTCCTTCACCAAAACGAGGATGCTTCTACATTTTCGTTGGACTAGCTTCAATGCCAAAAGAAACGGTTGTCACTCCACATTTAGCTACATACCTGGAACAAGTTCTTGAGCCATTACCACCTTCTGCAGTATTCCAGTCTCAAAATACCACTCGAGAAGCATCAGTTATAGATGATGGGAAAGGAGAGGGTAACTTTTCGAAATATATCTAAAAAGAGCCAACCTGATTATTTTTGTAGGAAACAACGAAGTTCACAATATAGTCGCAATGGATACTGCCGCTTTCCCGATAGACTTTATTTTCTACTTGGATGTTCAAAGTTCAACAATCCGGTTTGACGGTAAACAACCGACTTCTAGAAGCCAAGCACAAGCTGATTGTCTTCTCACCCTACCACGGCTCACTCTCGAACTGACTTCAAAACGAACAAAAGATAACATAGACAACTACGTTGGAGGAATTCACATTTCTGGGCAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>464 301 199 36</canonical_bands>
                <polymorphic_bands>765 199 36</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>503 259 238</canonical_bands>
                <polymorphic_bands>762 238</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>503 259 238</canonical_bands>
                <polymorphic_bands>762 238</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>503 464 33</canonical_bands>
                <polymorphic_bands>967 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATTACAACAACCACCTTCTGT</pcr_primer_p1>
		<pcr_primer_p2>CTAGTCCAACGAAAATGTAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTATTACAACAACCACCTTCTGTATTCCAAGTGTAGAAATCAAATGCTATCACGTCTCGGATCCTTCAAGTCGTATACCCGATCAATTCAAGCAGGATAAAAAGACAAAGCTATCAAGGGAATCATCTAAAGTTGCGGACAAATTGTACAGAGATTTGAATAACAAGAGTGCATTTGGAAACAGCTGCGTCAATGAAAACTCCACTTCTCCTTCACCAAAACGAGGATGCTTCTACATTTTCGTTGGACTAG</canonical_amplicon>
		<polymorphic_amplicon>TTATTACAACAACCACCTTCTGTATTCCAAGTGTAGAAATCAAATGCTATCACGTCTCGGATCCTTCAAGTCGTATACCCGATCAATTCAAGCAGGATAAAAAGACAAAGCTATCAAGGGAATCATCTAAAGTTGCGGACAAATTGTACAGAGATTTGAATAACAAGAGTGCATTTGGAAACAGCTRCGTCAATGAAAACTCCACTTCTCCTTCACCAAAACGAGGATGCTTCTACATTTTCGTTGGACTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24220</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>115828</contig_pos>
        <strand>+</strand>
        <context>CGGTACTCWT[A/T]ACCTGTGTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTCTTTAGCTCAACTAGCAGTCATTCGCCATTTTTTCTACGGTACTCAT</left_flank>
        <right_flank>ACCTGTGTAATCAGTAGAAATGTGTGGAACGCCTTTTTCATTAATCAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTGAGAAAGAAAAAAAAGAGGAAAAAAGAAAAGGAAGAAGGTGGAGGAGGAGAAGAACACCTACATAAACATTCTTTTCTTTGTGCTTCCACTTGGATGAATCGCTTTCTGAAAGACTACCTGTCCATACTCGTCAAAGCTCCTTCACACTTTGATCTTTCTCTTTCTTCCATATTCTCAGCTTTTTTTTCTTTCCTGGTTGGGGTTTCCTTGTTTCCCCATAAACAAAAAAAAATAATCACAGTACTCCTATACAAGGTTTGTTATGAAACTATAATTTTTATAGAACTTTTTTTGTTGCTAGATTTGGTAACTTTTATCATCATTCTATAATTTAATCAAACCATGAAACATTGCTTTCTGATTGATTTCCAATAGAAATTTTCAAGTTGGTTTTCCAAGGGGTTCCGAAACTCCGTCAATAGTCCGTCGACGGCCTTTCGGTTCTTCTTTAGCTCAACTAGCAGTCATTCGCCATTTTTTCTACGGTACTCATTACCTGTGTAATCAGTAGAAATGTGTGGAACGCCTTTTTCATTAATCAGAATTTGGAATACTGAATCCGAATTAAGATAATGTTCTCGGAATCCGGAAAAATGAAAAGTTCACGTAATCCAGAAAACGGAATCCAGAATAAGAAATTCTGTCATTTCCAATGTGCAAGAAAATTCTGAAAAACACATATGATGCTTTATTTTTTTGATTAATAGTAGCTGAAGTTTAAGAATAATTATCGCGGTTGAGAATTCTTGCAAGATAACATACCGTAAACACCTTAGTAGAACGCCACCCAAACCGTAGACTTCGAGCCTAATTATCTCACTTCTTTTGAAAGATATCAAAAAGTTGTCAGCTAATAAAAAGTTTATCATGATATCAGCAACATTTTATTTATCACTTTTTTATAGCTCTCACAGTAAATGAGATACATGGACTCAAGTTTGACGATTCGGGTGGCATTAGAGTGTTTACGGTACCTGCTGAAAACCAGGGGTAA</canonical>
            <polymorphic>ATTCTGAGAAAGAAAAAAAAGAGGAAAAAAGAAAAGGAAGAAGGTGGAGGAGGAGAAGAACACCTACATAAACATTCTTTTCTTTGTGCTTCCACTTGGATGAATCGCTTTCTGAAAGACTACCTGTCCATACTCGTCAAAGCTCCTTCACACTTTGATCTTTCTCTTTCTTCCATATTCTCAGCTTTTTTTTCTTTCCTGGTTGGGGTTTCCTTGTTTCCCCATAAACAAAAAAAAATAATCACAGTACTCCTATACAAGGTTTGTTATGAAACTATAATTTTTATAGAACTTTTTTTGTTGCTAGATTTGGTAACTTTTATCATCATTCTATAATTTAATCAAACCATGAAACATTGCTTTCTGATTGATTTCCAATAGAAATTTTCAAGTTGGTTTTCCAAGGGGTTCCGAAACTCCGTCAATAGTCCGTCGACGGCCTTTCGGTTCTTCTTTAGCTCAACTAGCAGTCATTCGCCATTTTTTCTACGGTACTCATWACCTGTGTAATCAGTAGAAATGTGTGGAACGCCTTTTTCATTAATCAGAATTTGGAATACTGAATCCGAATTAAGATAATGTTCTCGGAATCCGGAAAAATGAAAAGTTCACGTAATCCAGAAAACGGAATCCAGAATAAGAAATTCTGTCATTTCCAATGTGCAAGAAAATTCTGAAAAACACATATGATGCTTTATTTTTTTGATTAATAGTAGCTGAAGTTTAAGAATAATTATCGCGGTTGAGAATTCTTGCAAGATAACATACCGTAAACACCTTAGTAGAACGCCACCCAAACCGTAGACTTCGAGCCTAATTATCTCACTTCTTTTGAAAGATATCAAAAAGTTGTCAGCTAATAAAAAGTTTATCATGATATCAGCAACATTTTATTTATCACTTTTTTATAGCTCTCACAGTAAATGAGATACATGGACTCAAGTTTGACGATTCGGGTGGCATTAGAGTGTTTACGGTACCTGCTGAAAACCAGGGGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTTCTTCTTTAGCTCAACT</pcr_primer_p1>
		<pcr_primer_p2>ATCTTACCCCTGGTTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>559</pcr_amplicon_size>
		<canonical_amplicon>CGGTTCTTCTTTAGCTCAACTAGCAGTCATTCGCCATTTTTTCTACGGTACTCATTACCTGTGTAATCAGTAGAA</canonical_amplicon>
		<polymorphic_amplicon>CGGTTCTTCTTTAGCTCAACTAGCAGTCATTCGCCATTTTTTCTACGGTACTCATWACCTGTGTAATCAGTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24221</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>115973</contig_pos>
        <strand></strand>
        <context>gaataagaaa[T/A]tctgtcattt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GAAAAATGAAAAGTTCACGTAATCCAGAAAACGGAATCCAGAATAAGAAA</left_flank>
        <right_flank>TCTGTCATTTCCAATGTGCAAGAAAATTCTGAAAAACACATATGATGCTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCACACTTTGATCTTTCTCTTTCTTCCATATTCTCAGCTTTTTTTTCTTTCCTGGTTGGGGTTTCCTTGTTTCCCCATAAACAAAAAAAAATAATCACAGTACTCCTATACAAGGTTTGTTATGAAACTATAATTTTTATAGAACTTTTTTTGTTGCTAGATTTGGTAACTTTTATCATCATTCTATAATTTAATCAAACCATGAAACATTGCTTTCTGATTGATTTCCAATAGAAATTTTCAAGTTGGTTTTCCAAGGGGTTCCGAAACTCCGTCAATAGTCCGTCGACGGCCTTTCGGTTCTTCTTTAGCTCAACTAGCAGTCATTCGCCATTTTTTCTACGGTACTCATTACCTGTGTAATCAGTAGAAATGTGTGGAACGCCTTTTTCATTAATCAGAATTTGGAATACTGAATCCGAATTAAGATAATGTTCTCGGAATCCGGAAAAATGAAAAGTTCACGTAATCCAGAAAACGGAATCCAGAATAAGAAATTCTGTCATTTCCAATGTGCAAGAAAATTCTGAAAAACACATATGATGCTTTATTTTTTTGATTAATAGTAGCTGAAGTTTAAGAATAATTATCGCGGTTGAGAATTCTTGCAAGATAACATACCGTAAACACCTTAGTAGAACGCCACCCAAACCGTAGACTTCGAGCCTAATTATCTCACTTCTTTTGAAAGATATCAAAAAGTTGTCAGCTAATAAAAAGTTTATCATGATATCAGCAACATTTTATTTATCACTTTTTTATAGCTCTCACAGTAAATGAGATACATGGACTCAAGTTTGACGATTCGGGTGGCATTAGAGTGTTTACGGTACCTGCTGAAAACCAGGGGTAAGATTAAAAGTTTCCAGAATCTGGTCAAAAAATATATTCCAAGGAACTCGGAATCCGGAATCCAAGAATGACAAAAAATACGACATTCGGACATCTCTGGAGCACAACTGAAATCTTTTGTAAACTCAAAAACTGGGACTTCTTTT</canonical>
            <polymorphic>CTTCACACTTTGATCTTTCTCTTTCTTCCATATTCTCAGCTTTTTTTTCTTTCCTGGTTGGGGTTTCCTTGTTTCCCCATAAACAAAAAAAAATAATCACAGTACTCCTATACAAGGTTTGTTATGAAACTATAATTTTTATAGAACTTTTTTTGTTGCTAGATTTGGTAACTTTTATCATCATTCTATAATTTAATCAAACCATGAAACATTGCTTTCTGATTGATTTCCAATAGAAATTTTCAAGTTGGTTTTCCAAGGGGTTCCGAAACTCCGTCAATAGTCCGTCGACGGCCTTTCGGTTCTTCTTTAGCTCAACTAGCAGTCATTCGCCATTTTTTCTACGGTACTCATTACCTGTGTAATCAGTAGAAATGTGTGGAACGCCTTTTTCATTAATCAGAATTTGGAATACTGAATCCGAATTAAGATAATGTTCTCGGAATCCGGAAAAATGAAAAGTTCACGTAATCCAGAAAACGGAATCCAGAATAAGAAAWTCTGTCATTTCCAATGTGCAAGAAAATTCTGAAAAACACATATGATGCTTTATTTTTTTGATTAATAGTAGCTGAAGTTTAAGAATAATTATCGCGGTTGAGAATTCTTGCAAGATAACATACCGTAAACACCTTAGTAGAACGCCACCCAAACCGTAGACTTCGAGCCTAATTATCTCACTTCTTTTGAAAGATATCAAAAAGTTGTCAGCTAATAAAAAGTTTATCATGATATCAGCAACATTTTATTTATCACTTTTTTATAGCTCTCACAGTAAATGAGATACATGGACTCAAGTTTGACGATTCGGGTGGCATTAGAGTGTTTACGGTACCTGCTGAAAACCAGGGGTAAGATTAAAAGTTTCCAGAATCTGGTCAAAAAATATATTCCAAGGAACTCGGAATCCGGAATCCAAGAATGACAAAAAATACGACATTCGGACATCTCTGGAGCACAACTGAAATCTTTTGTAAACTCAAAAACTGGGACTTCTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>398 237 166 94 78 27</canonical_bands>
                <polymorphic_bands>398 237 166 121 78</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>330 166 133 74 68 62 56 48 27 20 16</canonical_bands>
                <polymorphic_bands>330 166 133 101 68 62 56 48 20 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAGCTCAACTAGCAGTCATTC</pcr_primer_p1>
		<pcr_primer_p2>ATCTTACCCCTGGTTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>550</pcr_amplicon_size>
		<canonical_amplicon>TTTAGCTCAACTAGCAGTCATTCGCCATTTTTTCTACGGTACTCATTACCTGTGTAATCAGTAGAAATGTGTGGAACGCCTTTTTCATTAATCAGAATTTGGAATACTGAATCCGAATTAAGATAATGTTCTCGGAATCCGGAAAAATGAAAAGTTCACGTAATCCAGAAAACGGAATCCAGAATAAGAAATTCTGTCATTTCCAATGTGCAAGAAAATTCTGAAAAACACATATGATGCTTTATTTTTTTGATTAATAGTAGCTGAAGTTTAAGAATAATTATCGCGGTTGAGAATTCTTGCAAGATAACATACCGTAAACACCTTAGTAGAACGCCACCCAAACCGTAGACTTCGAGCCTAATTATCTCACTTCTTTTGAAAGATATCAAAAAGTTGTCAGCTAATAAAAAGTTTATCATGATATCAGCAACATTTTATTTATCACTTTTTTATAGCTCTCACAGTAAATGAGATACATGGACTCAAGTTTGACGATTCGGGTGGCATTAGAGTGTTTACGGTACCTGCTGAAAACCAGGGGTAAGAT</canonical_amplicon>
		<polymorphic_amplicon>TTTAGCTCAACTAGCAGTCATTCGCCATTTTTTCTACGGTACTCATTACCTGTGTAATCAGTAGAAATGTGTGGAACGCCTTTTTCATTAATCAGAATTTGGAATACTGAATCCGAATTAAGATAATGTTCTCGGAATCCGGAAAAATGAAAAGTTCACGTAATCCAGAAAACGGAATCCAGAATAAGAAAWTCTGTCATTTCCAATGTGCAAGAAAATTCTGAAAAACACATATGATGCTTTATTTTTTTGATTAATAGTAGCTGAAGTTTAAGAATAATTATCGCGGTTGAGAATTCTTGCAAGATAACATACCGTAAACACCTTAGTAGAACGCCACCCAAACCGTAGACTTCGAGCCTAATTATCTCACTTCTTTTGAAAGATATCAAAAAGTTGTCAGCTAATAAAAAGTTTATCATGATATCAGCAACATTTTATTTATCACTTTTTTATAGCTCTCACAGTAAATGAGATACATGGACTCAAGTTTGACGATTCGGGTGGCATTAGAGTGTTTACGGTACCTGCTGAAAACCAGGGGTAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24222</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>190021</contig_pos>
        <strand>+</strand>
        <context>ATGAAAGCGG[C/T]TCCTAAACCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCATTTGAGAGAACAAGATAATTCATAATGATTTTCAGATGAAAGCGG</left_flank>
        <right_flank>TCCTAAACCAACTGTTGCTCCTCCTGTTGCTAAATCCGTTGGACAGAAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAGTAACCACACACCAAGCAAAAGTCTTGGATGAGAAACAACCGGAGCCCGATCCAGATCCATCTATTAAGTTTGAGACAACACAACTTACTCATATTATAATCGGTGAGTCTGCTATAGAAAACCCAATAAATAAATAGGGGTATTTCAGATTGTTCAGCGATATTATATGTTGATTTGATGGGCAAGGATGTTCTGATTGAAGTTTTTAATGACTACAAAACAATTGACATATCTGTTCTTTTTGCAAATACTCAAGGTTTTCGATGCTTCGTTTTTCAGATTTCCTAAATTTCGGATTTCAGAACGCGTTCGTCAGATTTTTGATACGACAAACTTTTTTGATGAAGTCCCCCAGAATCGTGTCTACGTCAATGTTGCAGATGCAGTTGATCAAGCTGAATTGGAACAAAGAAGGAAGAATGATGCCAAATATGTTATGGTATCTTTCATTTGAGAGAACAAGATAATTCATAATGATTTTCAGATGAAAGCGGCTCCTAAACCAACTGTTGCTCCTCCTGTTGCTAAATCCGTTGGACAGAAATCTGCTCCTCTTGGAGATAATACACTTGTCAAAACCCAGAGTTCAGGTTTAATAGGAAAATGAAACGTTGTGATATTTATTATATTTTCCAGCATCATTGGTTACTGGAGTGGAATTCTCTCCCAGAGAAAATACTGCAAGAGAGGGTACAATCCAGAAGAAACTAAAACCGCCTACAAAAGTTCCGAGTAAATCGAACATATTCTGGGATGACGACTTGGATAAAACACAATAAACTTTCTTTCTCTTCGAAAACTTTTTCTTTCTCTTCGAAAACTTCTTCGAAAACTTTTATTCTTTGTTTTAGAATATGTATAATTTAAAAAATCGGGCAATTACATTGTAAACAGTTCGCTGGTGCGCCTTCGACGCGATTTCACCTATTTATTCTACTGTTCGTCGCTCCCCTACTCAATTTTTCCAGAGGTCGCATCAACTTGTAATTAATTAT</canonical>
            <polymorphic>AGAAGTAACCACACACCAAGCAAAAGTCTTGGATGAGAAACAACCGGAGCCCGATCCAGATCCATCTATTAAGTTTGAGACAACACAACTTACTCATATTATAATCGGTGAGTCTGCTATAGAAAACCCAATAAATAAATAGGGGTATTTCAGATTGTTCAGCGATATTATATGTTGATTTGATGGGCAAGGATGTTCTGATTGAAGTTTTTAATGACTACAAAACAATTGACATATCTGTTCTTTTTGCAAATACTCAAGGTTTTCGATGCTTCGTTTTTCAGATTTCCTAAATTTCGGATTTCAGAACGCGTTCGTCAGATTTTTGATACGACAAACTTTTTTGATGAAGTCCCCCAGAATCGTGTCTACGTCAATGTTGCAGATGCAGTTGATCAAGCTGAATTGGAACAAAGAAGGAAGAATGATGCCAAATATGTTATGGTATCTTTCATTTGAGAGAACAAGATAATTCATAATGATTTTCAGATGAAAGCGGYTCCTAAACCAACTGTTGCTCCTCCTGTTGCTAAATCCGTTGGACAGAAATCTGCTCCTCTTGGAGATAATACACTTGTCAAAACCCAGAGTTCAGGTTTAATAGGAAAATGAAACGTTGTGATATTTATTATATTTTCCAGCATCATTGGTTACTGGAGTGGAATTCTCTCCCAGAGAAAATACTGCAAGAGAGGGTACAATCCAGAAGAAACTAAAACCGCCTACAAAAGTTCCGAGTAAATCGAACATATTCTGGGATGACGACTTGGATAAAACACAATAAACTTTCTTTCTCTTCGAAAACTTTTTCTTTCTCTTCGAAAACTTCTTCGAAAACTTTTATTCTTTGTTTTAGAATATGTATAATTTAAAAAATCGGGCAATTACATTGTAAACAGTTCGCTGGTGCGCCTTCGACGCGATTTCACCTATTTATTCTACTGTTCGTCGCTCCCCTACTCAATTTTTCCAGAGGTCGCATCAACTTGTAATTAATTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>501 351 99 49</canonical_bands>
                <polymorphic_bands>600 351 49</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTCATTTGAGAGAACAAGAT</pcr_primer_p1>
		<pcr_primer_p2>TACCCTCTCTTGCAGTATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTTTCATTTGAGAGAACAAGATAATTCATAATGATTTTCAGATGAAAGCGGCTCCTAAACCAACTGTTGCTCCTCCTGTTGCTAAATCCGTTGGACAGAAATCTGCTCCTCTTGGAGATAATACACTTGTCAAAACCCAGAGTTCAGGTTTAATAGGAAAATGAAACGTTGTGATATTTATTATATTTTCCAGCATCATTGGTTACTGGAGTGGAATTCTCTCCCAGAGAAAATACTGCAAGAGAGGGTA</canonical_amplicon>
		<polymorphic_amplicon>TCTTTCATTTGAGAGAACAAGATAATTCATAATGATTTTCAGATGAAAGCGGYTCCTAAACCAACTGTTGCTCCTCCTGTTGCTAAATCCGTTGGACAGAAATCTGCTCCTCTTGGAGATAATACACTTGTCAAAACCCAGAGTTCAGGTTTAATAGGAAAATGAAACGTTGTGATATTTATTATATTTTCCAGCATCATTGGTTACTGGAGTGGAATTCTCTCCCAGAGAAAATACTGCAAGAGAGGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24223</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>190270</contig_pos>
        <strand>+</strand>
        <context>TAAATCGAAC[A/G]TATTCTGGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATCCAGAAGAAACTAAAACCGCCTACAAAAGTTCCGAGTAAATCGAAC</left_flank>
        <right_flank>TATTCTGGGATGACGACTTGGATAAAACACAATAAACTTTCTTTCTCTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATACTCAAGGTTTTCGATGCTTCGTTTTTCAGATTTCCTAAATTTCGGATTTCAGAACGCGTTCGTCAGATTTTTGATACGACAAACTTTTTTGATGAAGTCCCCCAGAATCGTGTCTACGTCAATGTTGCAGATGCAGTTGATCAAGCTGAATTGGAACAAAGAAGGAAGAATGATGCCAAATATGTTATGGTATCTTTCATTTGAGAGAACAAGATAATTCATAATGATTTTCAGATGAAAGCGGCTCCTAAACCAACTGTTGCTCCTCCTGTTGCTAAATCCGTTGGACAGAAATCTGCTCCTCTTGGAGATAATACACTTGTCAAAACCCAGAGTTCAGGTTTAATAGGAAAATGAAACGTTGTGATATTTATTATATTTTCCAGCATCATTGGTTACTGGAGTGGAATTCTCTCCCAGAGAAAATACTGCAAGAGAGGGTACAATCCAGAAGAAACTAAAACCGCCTACAAAAGTTCCGAGTAAATCGAACATATTCTGGGATGACGACTTGGATAAAACACAATAAACTTTCTTTCTCTTCGAAAACTTTTTCTTTCTCTTCGAAAACTTCTTCGAAAACTTTTATTCTTTGTTTTAGAATATGTATAATTTAAAAAATCGGGCAATTACATTGTAAACAGTTCGCTGGTGCGCCTTCGACGCGATTTCACCTATTTATTCTACTGTTCGTCGCTCCCCTACTCAATTTTTCCAGAGGTCGCATCAACTTGTAATTAATTATCAAGCTTTTCAAAAAATCGGATTTATTCGTTTAGAAATTATTATTAACGTCACGCAATAAATCCATAAATCAATCAATACGAGGTCACACCCCTCCTTCTGTAAATTTTTGTCCAGATTTCCAATCACTTTTCCCAGATAATTTTTTTAGGAAAATGCGTTTTCAATTTTTCTGTCTGCTGTTAAATTTCATCAAGATTGCACAAACAGCCAGAATACGTTCTCCGAACTGTTATTAATTGTCAACCAA</canonical>
            <polymorphic>CAAATACTCAAGGTTTTCGATGCTTCGTTTTTCAGATTTCCTAAATTTCGGATTTCAGAACGCGTTCGTCAGATTTTTGATACGACAAACTTTTTTGATGAAGTCCCCCAGAATCGTGTCTACGTCAATGTTGCAGATGCAGTTGATCAAGCTGAATTGGAACAAAGAAGGAAGAATGATGCCAAATATGTTATGGTATCTTTCATTTGAGAGAACAAGATAATTCATAATGATTTTCAGATGAAAGCGGCTCCTAAACCAACTGTTGCTCCTCCTGTTGCTAAATCCGTTGGACAGAAATCTGCTCCTCTTGGAGATAATACACTTGTCAAAACCCAGAGTTCAGGTTTAATAGGAAAATGAAACGTTGTGATATTTATTATATTTTCCAGCATCATTGGTTACTGGAGTGGAATTCTCTCCCAGAGAAAATACTGCAAGAGAGGGTACAATCCAGAAGAAACTAAAACCGCCTACAAAAGTTCCGAGTAAATCGAACRTATTCTGGGATGACGACTTGGATAAAACACAATAAACTTTCTTTCTCTTCGAAAACTTTTTCTTTCTCTTCGAAAACTTCTTCGAAAACTTTTATTCTTTGTTTTAGAATATGTATAATTTAAAAAATCGGGCAATTACATTGTAAACAGTTCGCTGGTGCGCCTTCGACGCGATTTCACCTATTTATTCTACTGTTCGTCGCTCCCCTACTCAATTTTTCCAGAGGTCGCATCAACTTGTAATTAATTATCAAGCTTTTCAAAAAATCGGATTTATTCGTTTAGAAATTATTATTAACGTCACGCAATAAATCCATAAATCAATCAATACGAGGTCACACCCCTCCTTCTGTAAATTTTTGTCCAGATTTCCAATCACTTTTCCCAGATAATTTTTTTAGGAAAATGCGTTTTCAATTTTTCTGTCTGCTGTTAAATTTCATCAAGATTGCACAAACAGCCAGAATACGTTCTCCGAACTGTTATTAATTGTCAACCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCCAGAGTTCAGGTTTAATAG</pcr_primer_p1>
		<pcr_primer_p2>AAGAAGTTTTCGAAGAGAAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACCCAGAGTTCAGGTTTAATAGGAAAATGAAACGTTGTGATATTTATTATATTTTCCAGCATCATTGGTTACTGGAGTGGAATTCTCTCCCAGAGAAAATACTGCAAGAGAGGGTACAATCCAGAAGAAACTAAAACCGCCTACAAAAGTTCCGAGTAAATCGAACATATTCTGGGATGACGACTTGGATAAAACACAATAAACTTTCTTTCTCTTCGAAAACTTTTTCTTTCTCTTCGAAAACTTCTT</canonical_amplicon>
		<polymorphic_amplicon>AACCCAGAGTTCAGGTTTAATAGGAAAATGAAACGTTGTGATATTTATTATATTTTCCAGCATCATTGGTTACTGGAGTGGAATTCTCTCCCAGAGAAAATACTGCAAGAGAGGGTACAATCCAGAAGAAACTAAAACCGCCTACAAAAGTTCCGAGTAAATCGAACRTATTCTGGGATGACGACTTGGATAAAACACAATAAACTTTCTTTCTCTTCGAAAACTTTTTCTTTCTCTTCGAAAACTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24224</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>190321</contig_pos>
        <strand></strand>
        <context>CTTTCTCTTC[G/A]AAAACTTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TATTCTGGGATGACGACTTGGATAAAACACAATAAACTTTCTTTCTCTTC</left_flank>
        <right_flank>AAAACTTTTTCTTTCTCTTCGAAAACTTCTTCGAAAACTTTTATTCTTTG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCAGAACGCGTTCGTCAGATTTTTGATACGACAAACTTTTTTGATGAAGTCCCCCAGAATCGTGTCTACGTCAATGTTGCAGATGCAGTTGATCAAGCTGAATTGGAACAAAGAAGGAAGAATGATGCCAAATATGTTATGGTATCTTTCATTTGAGAGAACAAGATAATTCATAATGATTTTCAGATGAAAGCGGCTCCTAAACCAACTGTTGCTCCTCCTGTTGCTAAATCCGTTGGACAGAAATCTGCTCCTCTTGGAGATAATACACTTGTCAAAACCCAGAGTTCAGGTTTAATAGGAAAATGAAACGTTGTGATATTTATTATATTTTCCAGCATCATTGGTTACTGGAGTGGAATTCTCTCCCAGAGAAAATACTGCAAGAGAGGGTACAATCCAGAAGAAACTAAAACCGCCTACAAAAGTTCCGAGTAAATCGAACATATTCTGGGATGACGACTTGGATAAAACACAATAAACTTTCTTTCTCTTCGAAAACTTTTTCTTTCTCTTCGAAAACTTCTTCGAAAACTTTTATTCTTTGTTTTAGAATATGTATAATTTAAAAAATCGGGCAATTACATTGTAAACAGTTCGCTGGTGCGCCTTCGACGCGATTTCACCTATTTATTCTACTGTTCGTCGCTCCCCTACTCAATTTTTCCAGAGGTCGCATCAACTTGTAATTAATTATCAAGCTTTTCAAAAAATCGGATTTATTCGTTTAGAAATTATTATTAACGTCACGCAATAAATCCATAAATCAATCAATACGAGGTCACACCCCTCCTTCTGTAAATTTTTGTCCAGATTTCCAATCACTTTTCCCAGATAATTTTTTTAGGAAAATGCGTTTTCAATTTTTCTGTCTGCTGTTAAATTTCATCAAGATTGCACAAACAGCCAGAATACGTTCTCCGAACTGTTATTAATTGTCAACCAACGAATTCAAGGACCAGAGGTGCACAGACAGCGAAATTTTTTTCGGAACCAA</canonical>
            <polymorphic>ATTTCAGAACGCGTTCGTCAGATTTTTGATACGACAAACTTTTTTGATGAAGTCCCCCAGAATCGTGTCTACGTCAATGTTGCAGATGCAGTTGATCAAGCTGAATTGGAACAAAGAAGGAAGAATGATGCCAAATATGTTATGGTATCTTTCATTTGAGAGAACAAGATAATTCATAATGATTTTCAGATGAAAGCGGCTCCTAAACCAACTGTTGCTCCTCCTGTTGCTAAATCCGTTGGACAGAAATCTGCTCCTCTTGGAGATAATACACTTGTCAAAACCCAGAGTTCAGGTTTAATAGGAAAATGAAACGTTGTGATATTTATTATATTTTCCAGCATCATTGGTTACTGGAGTGGAATTCTCTCCCAGAGAAAATACTGCAAGAGAGGGTACAATCCAGAAGAAACTAAAACCGCCTACAAAAGTTCCGAGTAAATCGAACATATTCTGGGATGACGACTTGGATAAAACACAATAAACTTTCTTTCTCTTCRAAAACTTTTTCTTTCTCTTCGAAAACTTCTTCGAAAACTTTTATTCTTTGTTTTAGAATATGTATAATTTAAAAAATCGGGCAATTACATTGTAAACAGTTCGCTGGTGCGCCTTCGACGCGATTTCACCTATTTATTCTACTGTTCGTCGCTCCCCTACTCAATTTTTCCAGAGGTCGCATCAACTTGTAATTAATTATCAAGCTTTTCAAAAAATCGGATTTATTCGTTTAGAAATTATTATTAACGTCACGCAATAAATCCATAAATCAATCAATACGAGGTCACACCCCTCCTTCTGTAAATTTTTGTCCAGATTTCCAATCACTTTTCCCAGATAATTTTTTTAGGAAAATGCGTTTTCAATTTTTCTGTCTGCTGTTAAATTTCATCAAGATTGCACAAACAGCCAGAATACGTTCTCCGAACTGTTATTAATTGTCAACCAACGAATTCAAGGACCAGAGGTGCACAGACAGCGAAATTTTTTTCGGAACCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>498 469 21 12</canonical_bands>
                <polymorphic_bands>519 469 12</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>444 384 84 55 21 12</canonical_bands>
                <polymorphic_bands>444 384 84 76 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCATTGGTTACTGGAGTGG</pcr_primer_p1>
		<pcr_primer_p2>AATGTAATTGCCCGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCATTGGTTACTGGAGTGGAATTCTCTCCCAGAGAAAATACTGCAAGAGAGGGTACAATCCAGAAGAAACTAAAACCGCCTACAAAAGTTCCGAGTAAATCGAACATATTCTGGGATGACGACTTGGATAAAACACAATAAACTTTCTTTCTCTTCGAAAACTTTTTCTTTCTCTTCGAAAACTTCTTCGAAAACTTTTATTCTTTGTTTTAGAATATGTATAATTTAAAAAATCGGGCAATTACATT</canonical_amplicon>
		<polymorphic_amplicon>ATCATTGGTTACTGGAGTGGAATTCTCTCCCAGAGAAAATACTGCAAGAGAGGGTACAATCCAGAAGAAACTAAAACCGCCTACAAAAGTTCCGAGTAAATCGAACATATTCTGGGATGACGACTTGGATAAAACACAATAAACTTTCTTTCTCTTCRAAAACTTTTTCTTTCTCTTCGAAAACTTCTTCGAAAACTTTTATTCTTTGTTTTAGAATATGTATAATTTAAAAAATCGGGCAATTACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24225</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>190364</contig_pos>
        <strand></strand>
        <context>GAAAACTTTT[A/C]TTCTTTGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTCTTCGAAAACTTTTTCTTTCTCTTCGAAAACTTCTTCGAAAACTTTT</left_flank>
        <right_flank>TTCTTTGTTTTAGAATATGTATAATTTAAAAAATCGGGCAATTACATTGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGATGAAGTCCCCCAGAATCGTGTCTACGTCAATGTTGCAGATGCAGTTGATCAAGCTGAATTGGAACAAAGAAGGAAGAATGATGCCAAATATGTTATGGTATCTTTCATTTGAGAGAACAAGATAATTCATAATGATTTTCAGATGAAAGCGGCTCCTAAACCAACTGTTGCTCCTCCTGTTGCTAAATCCGTTGGACAGAAATCTGCTCCTCTTGGAGATAATACACTTGTCAAAACCCAGAGTTCAGGTTTAATAGGAAAATGAAACGTTGTGATATTTATTATATTTTCCAGCATCATTGGTTACTGGAGTGGAATTCTCTCCCAGAGAAAATACTGCAAGAGAGGGTACAATCCAGAAGAAACTAAAACCGCCTACAAAAGTTCCGAGTAAATCGAACATATTCTGGGATGACGACTTGGATAAAACACAATAAACTTTCTTTCTCTTCGAAAACTTTTTCTTTCTCTTCGAAAACTTCTTCGAAAACTTTTATTCTTTGTTTTAGAATATGTATAATTTAAAAAATCGGGCAATTACATTGTAAACAGTTCGCTGGTGCGCCTTCGACGCGATTTCACCTATTTATTCTACTGTTCGTCGCTCCCCTACTCAATTTTTCCAGAGGTCGCATCAACTTGTAATTAATTATCAAGCTTTTCAAAAAATCGGATTTATTCGTTTAGAAATTATTATTAACGTCACGCAATAAATCCATAAATCAATCAATACGAGGTCACACCCCTCCTTCTGTAAATTTTTGTCCAGATTTCCAATCACTTTTCCCAGATAATTTTTTTAGGAAAATGCGTTTTCAATTTTTCTGTCTGCTGTTAAATTTCATCAAGATTGCACAAACAGCCAGAATACGTTCTCCGAACTGTTATTAATTGTCAACCAACGAATTCAAGGACCAGAGGTGCACAGACAGCGAAATTTTTTTCGGAACCAAAAATGGCCGGTCAACGGATGGCGAACAACGGACAACACACAAA</canonical>
            <polymorphic>TTGATGAAGTCCCCCAGAATCGTGTCTACGTCAATGTTGCAGATGCAGTTGATCAAGCTGAATTGGAACAAAGAAGGAAGAATGATGCCAAATATGTTATGGTATCTTTCATTTGAGAGAACAAGATAATTCATAATGATTTTCAGATGAAAGCGGCTCCTAAACCAACTGTTGCTCCTCCTGTTGCTAAATCCGTTGGACAGAAATCTGCTCCTCTTGGAGATAATACACTTGTCAAAACCCAGAGTTCAGGTTTAATAGGAAAATGAAACGTTGTGATATTTATTATATTTTCCAGCATCATTGGTTACTGGAGTGGAATTCTCTCCCAGAGAAAATACTGCAAGAGAGGGTACAATCCAGAAGAAACTAAAACCGCCTACAAAAGTTCCGAGTAAATCGAACATATTCTGGGATGACGACTTGGATAAAACACAATAAACTTTCTTTCTCTTCGAAAACTTTTTCTTTCTCTTCGAAAACTTCTTCGAAAACTTTTMTTCTTTGTTTTAGAATATGTATAATTTAAAAAATCGGGCAATTACATTGTAAACAGTTCGCTGGTGCGCCTTCGACGCGATTTCACCTATTTATTCTACTGTTCGTCGCTCCCCTACTCAATTTTTCCAGAGGTCGCATCAACTTGTAATTAATTATCAAGCTTTTCAAAAAATCGGATTTATTCGTTTAGAAATTATTATTAACGTCACGCAATAAATCCATAAATCAATCAATACGAGGTCACACCCCTCCTTCTGTAAATTTTTGTCCAGATTTCCAATCACTTTTCCCAGATAATTTTTTTAGGAAAATGCGTTTTCAATTTTTCTGTCTGCTGTTAAATTTCATCAAGATTGCACAAACAGCCAGAATACGTTCTCCGAACTGTTATTAATTGTCAACCAACGAATTCAAGGACCAGAGGTGCACAGACAGCGAAATTTTTTTCGGAACCAAAAATGGCCGGTCAACGGATGGCGAACAACGGACAACACACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACACAATAAACTTTCTTTCTCTTC</pcr_primer_p1>
		<pcr_primer_p2>ATTGGAAATCTGGACAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>351</pcr_amplicon_size>
		<canonical_amplicon>AACACAATAAACTTTCTTTCTCTTCGAAAACTTTTTCTTTCTCTTCGAAAACTTCTTCGAAAACTTTTATTCTTTGTTTTAGAATATGTATAATTTAAAAAATCGGGCAATTACATTGTAAACAGTTCGCTGGTGCGCCTTCGACGCGATTTCACCTATTTATTCTACTGTTCGTCGCTCCCCTACTCAATTTTTCCAGAGGTCGCATCAACTTGTAATTAATTATCAAGCTTTTCAAAAAATCGGATTTATTCGTTTAGAAATTATTATTAACGTCACGCAATAAATCCATAAATCAATCAATACGAGGTCACACCCCTCCTTCTGTAAATTTTTGTCCAGATTTCCAAT</canonical_amplicon>
		<polymorphic_amplicon>AACACAATAAACTTTCTTTCTCTTCGAAAACTTTTTCTTTCTCTTCGAAAACTTCTTCGAAAACTTTTMTTCTTTGTTTTAGAATATGTATAATTTAAAAAATCGGGCAATTACATTGTAAACAGTTCGCTGGTGCGCCTTCGACGCGATTTCACCTATTTATTCTACTGTTCGTCGCTCCCCTACTCAATTTTTCCAGAGGTCGCATCAACTTGTAATTAATTATCAAGCTTTTCAAAAAATCGGATTTATTCGTTTAGAAATTATTATTAACGTCACGCAATAAATCCATAAATCAATCAATACGAGGTCACACCCCTCCTTCTGTAAATTTTTGTCCAGATTTCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24226</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>190375</contig_pos>
        <strand>+</strand>
        <context>TTCTTTGTTT[A/C]AGAATATGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACTTTTTCTTTCTCTTCGAAAACTTCTTCGAAAACTTTTATTCTTTGTTT</left_flank>
        <right_flank>AGAATATGTATAATTTAAAAAATCGGGCAATTACATTGTAAACAGTTCGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCCAGAATCGTGTCTACGTCAATGTTGCAGATGCAGTTGATCAAGCTGAATTGGAACAAAGAAGGAAGAATGATGCCAAATATGTTATGGTATCTTTCATTTGAGAGAACAAGATAATTCATAATGATTTTCAGATGAAAGCGGCTCCTAAACCAACTGTTGCTCCTCCTGTTGCTAAATCCGTTGGACAGAAATCTGCTCCTCTTGGAGATAATACACTTGTCAAAACCCAGAGTTCAGGTTTAATAGGAAAATGAAACGTTGTGATATTTATTATATTTTCCAGCATCATTGGTTACTGGAGTGGAATTCTCTCCCAGAGAAAATACTGCAAGAGAGGGTACAATCCAGAAGAAACTAAAACCGCCTACAAAAGTTCCGAGTAAATCGAACATATTCTGGGATGACGACTTGGATAAAACACAATAAACTTTCTTTCTCTTCGAAAACTTTTTCTTTCTCTTCGAAAACTTCTTCGAAAACTTTTATTCTTTGTTTTAGAATATGTATAATTTAAAAAATCGGGCAATTACATTGTAAACAGTTCGCTGGTGCGCCTTCGACGCGATTTCACCTATTTATTCTACTGTTCGTCGCTCCCCTACTCAATTTTTCCAGAGGTCGCATCAACTTGTAATTAATTATCAAGCTTTTCAAAAAATCGGATTTATTCGTTTAGAAATTATTATTAACGTCACGCAATAAATCCATAAATCAATCAATACGAGGTCACACCCCTCCTTCTGTAAATTTTTGTCCAGATTTCCAATCACTTTTCCCAGATAATTTTTTTAGGAAAATGCGTTTTCAATTTTTCTGTCTGCTGTTAAATTTCATCAAGATTGCACAAACAGCCAGAATACGTTCTCCGAACTGTTATTAATTGTCAACCAACGAATTCAAGGACCAGAGGTGCACAGACAGCGAAATTTTTTTCGGAACCAAAAATGGCCGGTCAACGGATGGCGAACAACGGACAACACACAAAATTTTCAAAAT</canonical>
            <polymorphic>CCCCAGAATCGTGTCTACGTCAATGTTGCAGATGCAGTTGATCAAGCTGAATTGGAACAAAGAAGGAAGAATGATGCCAAATATGTTATGGTATCTTTCATTTGAGAGAACAAGATAATTCATAATGATTTTCAGATGAAAGCGGCTCCTAAACCAACTGTTGCTCCTCCTGTTGCTAAATCCGTTGGACAGAAATCTGCTCCTCTTGGAGATAATACACTTGTCAAAACCCAGAGTTCAGGTTTAATAGGAAAATGAAACGTTGTGATATTTATTATATTTTCCAGCATCATTGGTTACTGGAGTGGAATTCTCTCCCAGAGAAAATACTGCAAGAGAGGGTACAATCCAGAAGAAACTAAAACCGCCTACAAAAGTTCCGAGTAAATCGAACATATTCTGGGATGACGACTTGGATAAAACACAATAAACTTTCTTTCTCTTCGAAAACTTTTTCTTTCTCTTCGAAAACTTCTTCGAAAACTTTTATTCTTTGTTTMAGAATATGTATAATTTAAAAAATCGGGCAATTACATTGTAAACAGTTCGCTGGTGCGCCTTCGACGCGATTTCACCTATTTATTCTACTGTTCGTCGCTCCCCTACTCAATTTTTCCAGAGGTCGCATCAACTTGTAATTAATTATCAAGCTTTTCAAAAAATCGGATTTATTCGTTTAGAAATTATTATTAACGTCACGCAATAAATCCATAAATCAATCAATACGAGGTCACACCCCTCCTTCTGTAAATTTTTGTCCAGATTTCCAATCACTTTTCCCAGATAATTTTTTTAGGAAAATGCGTTTTCAATTTTTCTGTCTGCTGTTAAATTTCATCAAGATTGCACAAACAGCCAGAATACGTTCTCCGAACTGTTATTAATTGTCAACCAACGAATTCAAGGACCAGAGGTGCACAGACAGCGAAATTTTTTTCGGAACCAAAAATGGCCGGTCAACGGATGGCGAACAACGGACAACACACAAAATTTTCAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACACAATAAACTTTCTTTCTCTTC</pcr_primer_p1>
		<pcr_primer_p2>ATTGGAAATCTGGACAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>351</pcr_amplicon_size>
		<canonical_amplicon>AACACAATAAACTTTCTTTCTCTTCGAAAACTTTTTCTTTCTCTTCGAAAACTTCTTCGAAAACTTTTATTCTTTGTTTTAGAATATGTATAATTTAAAAAATCGGGCAATTACATTGTAAACAGTTCGCTGGTGCGCCTTCGACGCGATTTCACCTATTTATTCTACTGTTCGTCGCTCCCCTACTCAATTTTTCCAGAGGTCGCATCAACTTGTAATTAATTATCAAGCTTTTCAAAAAATCGGATTTATTCGTTTAGAAATTATTATTAACGTCACGCAATAAATCCATAAATCAATCAATACGAGGTCACACCCCTCCTTCTGTAAATTTTTGTCCAGATTTCCAAT</canonical_amplicon>
		<polymorphic_amplicon>AACACAATAAACTTTCTTTCTCTTCGAAAACTTTTTCTTTCTCTTCGAAAACTTCTTCGAAAACTTTTATTCTTTGTTTMAGAATATGTATAATTTAAAAAATCGGGCAATTACATTGTAAACAGTTCGCTGGTGCGCCTTCGACGCGATTTCACCTATTTATTCTACTGTTCGTCGCTCCCCTACTCAATTTTTCCAGAGGTCGCATCAACTTGTAATTAATTATCAAGCTTTTCAAAAAATCGGATTTATTCGTTTAGAAATTATTATTAACGTCACGCAATAAATCCATAAATCAATCAATACGAGGTCACACCCCTCCTTCTGTAAATTTTTGTCCAGATTTCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24227</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>192077</contig_pos>
        <strand></strand>
        <context>aatttgaaaa[A/T]tttcgtaaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCTTGCATTTGGTGCGTCCCGGAAACCAAACTGCTCCTAGAATTTGAAAA</left_flank>
        <right_flank>TTTCGTAAATTTACCAATTTCCATTTCCTTACCTCTCATTCTATTCCAAT</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATACTTGCGAAAAGTTGTCAAGGATTTGTTCATCAAAAATTTACAACAGTTTTGTTAAAATTAAAATCTAGGAGAATGGAATGTCCAAACCCCAGAAAATTTCGTTAATTTACCAATTCCCATTTCCAGGATGATTTCCTCATCTTTCATTTTATTTCGCTACTCCTGTCATCATCTCGTTTCAGGTCCTTGCAAATCCTGGATGCCGGCCTGGTAGATGTCCTCGAGGTGCTGGAAAGTTGACTTTCAAAAATGAGTGCTGAGTTTTTTTCTCAGGTTTTCGAGGTGTTTCATAATAATTTTACAAAATGACTTTTTTCTTGATAATGCAAAACTAGCAAAATGGGTTGTCCGAACCCGAGAGTCTCGAATTTTTACCCATTCCCGTTTCCTCACCTCTCATTATATTCCGCTTCCTCGTTTCTGCCAATCTTGCCCTAGAAACCGTCCTTGCATTTGGTGCGTCCCGGAAACCAAACTGCTCCTAGAATTTGAAAAATTTCGTAAATTTACCAATTTCCATTTCCTTACCTCTCATTCTATTCCAATTCTGGAAACATCACTGGAAGTTGTCCTCGAAGACCTGGAAGTTGTTGAAACGCTTTAAAGCCACTGCAAAATCCTGCAACTTGAACGTTGGAAACTAAGTACTGATTTTCCCTTATTTTCAAAATCATAGAGTTAGCCCCCATTTTTTAAAGTTTACGGAGATCACATCAAATTGAATTTATATAGAAAAACTGTGAGTTTACGAGAAATCTTTGCCGTAAACACTGTAATATAATGTCTTATAGCCGTCCACTTTGAATCAATTAATCTCGGTTCCTGAGAAGGATATCAAAAAGTTGTCAGCTAATTAAATGTTTATCACAACATCAACAATATTTTATCAGTTGACCACTTTTTGATATCTATTACAGAAACCGAGATAAATTGGCTCAAAGTTGACGTTTTGGGTGGCACTTAGAGTTTTTACGGTGGTTCGTATATTTCAACATG</canonical>
            <polymorphic>AATACTTGCGAAAAGTTGTCAAGGATTTGTTCATCAAAAATTTACAACAGTTTTGTTAAAATTAAAATCTAGGAGAATGGAATGTCCAAACCCCAGAAAATTTCGTTAATTTACCAATTCCCATTTCCAGGATGATTTCCTCATCTTTCATTTTATTTCGCTACTCCTGTCATCATCTCGTTTCAGGTCCTTGCAAATCCTGGATGCCGGCCTGGTAGATGTCCTCGAGGTGCTGGAAAGTTGACTTTCAAAAATGAGTGCTGAGTTTTTTTCTCAGGTTTTCGAGGTGTTTCATAATAATTTTACAAAATGACTTTTTTCTTGATAATGCAAAACTAGCAAAATGGGTTGTCCGAACCCGAGAGTCTCGAATTTTTACCCATTCCCGTTTCCTCACCTCTCATTATATTCCGCTTCCTCGTTTCTGCCAATCTTGCCCTAGAAACCGTCCTTGCATTTGGTGCGTCCCGGAAACCAAACTGCTCCTAGAATTTGAAAAWTTTCGTAAATTTACCAATTTCCATTTCCTTACCTCTCATTCTATTCCAATTCTGGAAACATCACTGGAAGTTGTCCTCGAAGACCTGGAAGTTGTTGAAACGCTTTAAAGCCACTGCAAAATCCTGCAACTTGAACGTTGGAAACTAAGTACTGATTTTCCCTTATTTTCAAAATCATAGAGTTAGCCCCCATTTTTTAAAGTTTACGGAGATCACATCAAATTGAATTTATATAGAAAAACTGTGAGTTTACGAGAAATCTTTGCCGTAAACACTGTAATATAATGTCTTATAGCCGTCCACTTTGAATCAATTAATCTCGGTTCCTGAGAAGGATATCAAAAAGTTGTCAGCTAATTAAATGTTTATCACAACATCAACAATATTTTATCAGTTGACCACTTTTTGATATCTATTACAGAAACCGAGATAAATTGGCTCAAAGTTGACGTTTTGGGTGGCACTTAGAGTTTTTACGGTGGTTCGTATATTTCAACATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>275 272 218 119 60 38 9 9</canonical_bands>
                <polymorphic_bands>275 272 218 119 60 38 18</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>183 173 119 86 77 72 68 44 39 38 32 21 9 9 9 8 8 5</canonical_bands>
                <polymorphic_bands>183 173 119 86 77 72 68 44 39 38 32 21 18 9 8 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTAGCAAAATGGGTTGTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTCTGGAATATTGTTAATTC</pcr_primer_p2>
		<pcr_amplicon_size>724</pcr_amplicon_size>
		<canonical_amplicon>AAACTAGCAAAATGGGTTGTCCGAACCCGAGAGTCTCGAATTTTTACCCATTCCCGTTTCCTCACCTCTCATTATATTCCGCTTCCTCGTTTCTGCCAATCTTGCCCTAGAAACCGTCCTTGCATTTGGTGCGTCCCGGAAACCAAACTGCTCCTAGAATTTGAAAAATTTCGTAAATTTACCAATTTCCAT</canonical_amplicon>
		<polymorphic_amplicon>AAACTAGCAAAATGGGTTGTCCGAACCCGAGAGTCTCGAATTTTTACCCATTCCCGTTTCCTCACCTCTCATTATATTCCGCTTCCTCGTTTCTGCCAATCTTGCCCTAGAAACCGTCCTTGCATTTGGTGCGTCCCGGAAACCAAACTGCTCCTAGAATTTGAAAAWTTTCGTAAATTTACCAATTTCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24228</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>192140</contig_pos>
        <strand></strand>
        <context>tggaaacatc[A/C]ctggaagttg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACCAATTTCCATTTCCTTACCTCTCATTCTATTCCAATTCTGGAAACATC</left_flank>
        <right_flank>CTGGAAGTTGTCCTCGAAGACCTGGAAGTTGTTGAAACGCTTTAAAGCCA</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATCTAGGAGAATGGAATGTCCAAACCCCAGAAAATTTCGTTAATTTACCAATTCCCATTTCCAGGATGATTTCCTCATCTTTCATTTTATTTCGCTACTCCTGTCATCATCTCGTTTCAGGTCCTTGCAAATCCTGGATGCCGGCCTGGTAGATGTCCTCGAGGTGCTGGAAAGTTGACTTTCAAAAATGAGTGCTGAGTTTTTTTCTCAGGTTTTCGAGGTGTTTCATAATAATTTTACAAAATGACTTTTTTCTTGATAATGCAAAACTAGCAAAATGGGTTGTCCGAACCCGAGAGTCTCGAATTTTTACCCATTCCCGTTTCCTCACCTCTCATTATATTCCGCTTCCTCGTTTCTGCCAATCTTGCCCTAGAAACCGTCCTTGCATTTGGTGCGTCCCGGAAACCAAACTGCTCCTAGAATTTGAAAAATTTCGTAAATTTACCAATTTCCATTTCCTTACCTCTCATTCTATTCCAATTCTGGAAACATCACTGGAAGTTGTCCTCGAAGACCTGGAAGTTGTTGAAACGCTTTAAAGCCACTGCAAAATCCTGCAACTTGAACGTTGGAAACTAAGTACTGATTTTCCCTTATTTTCAAAATCATAGAGTTAGCCCCCATTTTTTAAAGTTTACGGAGATCACATCAAATTGAATTTATATAGAAAAACTGTGAGTTTACGAGAAATCTTTGCCGTAAACACTGTAATATAATGTCTTATAGCCGTCCACTTTGAATCAATTAATCTCGGTTCCTGAGAAGGATATCAAAAAGTTGTCAGCTAATTAAATGTTTATCACAACATCAACAATATTTTATCAGTTGACCACTTTTTGATATCTATTACAGAAACCGAGATAAATTGGCTCAAAGTTGACGTTTTGGGTGGCACTTAGAGTTTTTACGGTGGTTCGTATATTTCAACATGTATCAATGAAATTCTGATTCACTGAATTGTTGAATTAACAATATTCCAGAATTTTTGAATTCC</canonical>
            <polymorphic>AAAATCTAGGAGAATGGAATGTCCAAACCCCAGAAAATTTCGTTAATTTACCAATTCCCATTTCCAGGATGATTTCCTCATCTTTCATTTTATTTCGCTACTCCTGTCATCATCTCGTTTCAGGTCCTTGCAAATCCTGGATGCCGGCCTGGTAGATGTCCTCGAGGTGCTGGAAAGTTGACTTTCAAAAATGAGTGCTGAGTTTTTTTCTCAGGTTTTCGAGGTGTTTCATAATAATTTTACAAAATGACTTTTTTCTTGATAATGCAAAACTAGCAAAATGGGTTGTCCGAACCCGAGAGTCTCGAATTTTTACCCATTCCCGTTTCCTCACCTCTCATTATATTCCGCTTCCTCGTTTCTGCCAATCTTGCCCTAGAAACCGTCCTTGCATTTGGTGCGTCCCGGAAACCAAACTGCTCCTAGAATTTGAAAAATTTCGTAAATTTACCAATTTCCATTTCCTTACCTCTCATTCTATTCCAATTCTGGAAACATCMCTGGAAGTTGTCCTCGAAGACCTGGAAGTTGTTGAAACGCTTTAAAGCCACTGCAAAATCCTGCAACTTGAACGTTGGAAACTAAGTACTGATTTTCCCTTATTTTCAAAATCATAGAGTTAGCCCCCATTTTTTAAAGTTTACGGAGATCACATCAAATTGAATTTATATAGAAAAACTGTGAGTTTACGAGAAATCTTTGCCGTAAACACTGTAATATAATGTCTTATAGCCGTCCACTTTGAATCAATTAATCTCGGTTCCTGAGAAGGATATCAAAAAGTTGTCAGCTAATTAAATGTTTATCACAACATCAACAATATTTTATCAGTTGACCACTTTTTGATATCTATTACAGAAACCGAGATAAATTGGCTCAAAGTTGACGTTTTGGGTGGCACTTAGAGTTTTTACGGTGGTTCGTATATTTCAACATGTATCAATGAAATTCTGATTCACTGAATTGTTGAATTAACAATATTCCAGAATTTTTGAATTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>169 107 102 100 69 67 59 50 42 40 31 30 29 28 28 28 18 3</canonical_bands>
                <polymorphic_bands>169 150 107 102 69 67 59 42 40 31 30 29 28 28 28 18 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTAGCAAAATGGGTTGTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTCTGGAATATTGTTAATTC</pcr_primer_p2>
		<pcr_amplicon_size>724</pcr_amplicon_size>
		<canonical_amplicon>AAACTAGCAAAATGGGTTGTCCGAACCCGAGAGTCTCGAATTTTTACCCATTCCCGTTTCCTCACCTCTCATTATATTCCGCTTCCTCGTTTCTGCCAATCTTGCCCTAGAAACCGTCCTTGCATTTGGTGCGTCCCGGAAACCAAACTGCTCCTAGAATTTGAAAAATTTCGTAAATTTACCAATTTCCATTTCCTTACCTCTCATTCTATTCCAATTCTGGAAACATCACTGGAAGTTGTCCTCGAAGACCTGGAAGTTGTTGAAACGCTTTAAAGCCACTGCAAAATCCTGCAACTTGAACGTTGGAAACTAAGTACTGATTTTCCCTTATTTTCAAAATCATAGAGTTAGCCCCCATTTTTTAAAGTTTACGGAGATCACATCAAATTGAATTTATATAGAAAAACTGTGAGTTTACGAGAAATCTTTGCCGTAAACACTGTAATATAATGTCTTATAGCCGTCCACTTTGAATCAATTAATCTCGGTTCCTGAGAAGGATATCAAAAAGTTGTCAGCTAATTAAATGTTTATCACAACATCAACAATATTTTATCAGTTGACCACTTTTTGATATCTATTACAGAAACCGAGATAAATTGGCTCAAAGTTGACGTTTTGGGTGGCACTTAGAGTTTTTACGGTGGTTCGTATATTTCAACATGTATCAATGAAATTCTGATTCACTGAATTGTTGAATTAACAATATTCCAGAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAACTAGCAAAATGGGTTGTCCGAACCCGAGAGTCTCGAATTTTTACCCATTCCCGTTTCCTCACCTCTCATTATATTCCGCTTCCTCGTTTCTGCCAATCTTGCCCTAGAAACCGTCCTTGCATTTGGTGCGTCCCGGAAACCAAACTGCTCCTAGAATTTGAAAAATTTCGTAAATTTACCAATTTCCATTTCCTTACCTCTCATTCTATTCCAATTCTGGAAACATCMCTGGAAGTTGTCCTCGAAGACCTGGAAGTTGTTGAAACGCTTTAAAGCCACTGCAAAATCCTGCAACTTGAACGTTGGAAACTAAGTACTGATTTTCCCTTATTTTCAAAATCATAGAGTTAGCCCCCATTTTTTAAAGTTTACGGAGATCACATCAAATTGAATTTATATAGAAAAACTGTGAGTTTACGAGAAATCTTTGCCGTAAACACTGTAATATAATGTCTTATAGCCGTCCACTTTGAATCAATTAATCTCGGTTCCTGAGAAGGATATCAAAAAGTTGTCAGCTAATTAAATGTTTATCACAACATCAACAATATTTTATCAGTTGACCACTTTTTGATATCTATTACAGAAACCGAGATAAATTGGCTCAAAGTTGACGTTTTGGGTGGCACTTAGAGTTTTTACGGTGGTTCGTATATTTCAACATGTATCAATGAAATTCTGATTCACTGAATTGTTGAATTAACAATATTCCAGAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24229</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>192296</contig_pos>
        <strand></strand>
        <context>gagatcacat[C/T]aaattgaatt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAAAATCATAGAGTTAGCCCCCATTTTTTAAAGTTTACGGAGATCACAT</left_flank>
        <right_flank>AAATTGAATTTATATAGAAAAACTGTGAGTTTACGAGAAATCTTTGCCGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCCTCGAGGTGCTGGAAAGTTGACTTTCAAAAATGAGTGCTGAGTTTTTTTCTCAGGTTTTCGAGGTGTTTCATAATAATTTTACAAAATGACTTTTTTCTTGATAATGCAAAACTAGCAAAATGGGTTGTCCGAACCCGAGAGTCTCGAATTTTTACCCATTCCCGTTTCCTCACCTCTCATTATATTCCGCTTCCTCGTTTCTGCCAATCTTGCCCTAGAAACCGTCCTTGCATTTGGTGCGTCCCGGAAACCAAACTGCTCCTAGAATTTGAAAAATTTCGTAAATTTACCAATTTCCATTTCCTTACCTCTCATTCTATTCCAATTCTGGAAACATCACTGGAAGTTGTCCTCGAAGACCTGGAAGTTGTTGAAACGCTTTAAAGCCACTGCAAAATCCTGCAACTTGAACGTTGGAAACTAAGTACTGATTTTCCCTTATTTTCAAAATCATAGAGTTAGCCCCCATTTTTTAAAGTTTACGGAGATCACATCAAATTGAATTTATATAGAAAAACTGTGAGTTTACGAGAAATCTTTGCCGTAAACACTGTAATATAATGTCTTATAGCCGTCCACTTTGAATCAATTAATCTCGGTTCCTGAGAAGGATATCAAAAAGTTGTCAGCTAATTAAATGTTTATCACAACATCAACAATATTTTATCAGTTGACCACTTTTTGATATCTATTACAGAAACCGAGATAAATTGGCTCAAAGTTGACGTTTTGGGTGGCACTTAGAGTTTTTACGGTGGTTCGTATATTTCAACATGTATCAATGAAATTCTGATTCACTGAATTGTTGAATTAACAATATTCCAGAATTTTTGAATTCCTGCAATCCCCCATTTTAAATTTGAGAAGAGTTGCTCAAGTCCCAAAACCTCTTGCGCGGATATTTTTGGAATTGAAAGTCTGGACGATCCAGACATTCCAGAAAACTTCGAAACCAAAATCTTAGAAAAATCAAGAATTTGCTATAACATAATTGT</canonical>
            <polymorphic>TGTCCTCGAGGTGCTGGAAAGTTGACTTTCAAAAATGAGTGCTGAGTTTTTTTCTCAGGTTTTCGAGGTGTTTCATAATAATTTTACAAAATGACTTTTTTCTTGATAATGCAAAACTAGCAAAATGGGTTGTCCGAACCCGAGAGTCTCGAATTTTTACCCATTCCCGTTTCCTCACCTCTCATTATATTCCGCTTCCTCGTTTCTGCCAATCTTGCCCTAGAAACCGTCCTTGCATTTGGTGCGTCCCGGAAACCAAACTGCTCCTAGAATTTGAAAAATTTCGTAAATTTACCAATTTCCATTTCCTTACCTCTCATTCTATTCCAATTCTGGAAACATCACTGGAAGTTGTCCTCGAAGACCTGGAAGTTGTTGAAACGCTTTAAAGCCACTGCAAAATCCTGCAACTTGAACGTTGGAAACTAAGTACTGATTTTCCCTTATTTTCAAAATCATAGAGTTAGCCCCCATTTTTTAAAGTTTACGGAGATCACATYAAATTGAATTTATATAGAAAAACTGTGAGTTTACGAGAAATCTTTGCCGTAAACACTGTAATATAATGTCTTATAGCCGTCCACTTTGAATCAATTAATCTCGGTTCCTGAGAAGGATATCAAAAAGTTGTCAGCTAATTAAATGTTTATCACAACATCAACAATATTTTATCAGTTGACCACTTTTTGATATCTATTACAGAAACCGAGATAAATTGGCTCAAAGTTGACGTTTTGGGTGGCACTTAGAGTTTTTACGGTGGTTCGTATATTTCAACATGTATCAATGAAATTCTGATTCACTGAATTGTTGAATTAACAATATTCCAGAATTTTTGAATTCCTGCAATCCCCCATTTTAAATTTGAGAAGAGTTGCTCAAGTCCCAAAACCTCTTGCGCGGATATTTTTGGAATTGAAAGTCTGGACGATCCAGACATTCCAGAAAACTTCGAAACCAAAATCTTAGAAAAATCAAGAATTTGCTATAACATAATTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTAGCAAAATGGGTTGTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTCTGGAATATTGTTAATTC</pcr_primer_p2>
		<pcr_amplicon_size>724</pcr_amplicon_size>
		<canonical_amplicon>AAACTAGCAAAATGGGTTGTCCGAACCCGAGAGTCTCGAATTTTTACCCATTCCCGTTTCCTCACCTCTCATTATATTCCGCTTCCTCGTTTCTGCCAATCTTGCCCTAGAAACCGTCCTTGCATTTGGTGCGTCCCGGAAACCAAACTGCTCCTAGAATTTGAAAAATTTCGTAAATTTACCAATTTCCATTTCCTTACCTCTCATTCTATTCCAATTCTGGAAACATCACTGGAAGTTGTCCTCGAAGACCTGGAAGTTGTTGAAACGCTTTAAAGCCACTGCAAAATCCTGCAACTTGAACGTTGGAAACTAAGTACTGATTTTCCCTTATTTTCAAAATCATAGAGTTAGCCCCCATTTTTTAAAGTTTACGGAGATCACATCAAATTGAATTTATATAGAAAAACTGTGAGTTTACGAGAAATCTTTGCCGTAAACACTGTAATATAATGTCTTATAGCCGTCCACTTTGAATCAATTAATCTCGGTTCCTGAGAAGGATATCAAAAAGTTGTCAGCTAATTAAATGTTTATCACAACATCAACAATATTTTATCAGTTGACCACTTTTTGATATCTATTACAGAAACCGAGATAAATTGGCTCAAAGTTGACGTTTTGGGTGGCACTTAGAGTTTTTACGGTGGTTCGTATATTTCAACATGTATCAATGAAATTCTGATTCACTGAATTGTTGAATTAACAATATTCCAGAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAACTAGCAAAATGGGTTGTCCGAACCCGAGAGTCTCGAATTTTTACCCATTCCCGTTTCCTCACCTCTCATTATATTCCGCTTCCTCGTTTCTGCCAATCTTGCCCTAGAAACCGTCCTTGCATTTGGTGCGTCCCGGAAACCAAACTGCTCCTAGAATTTGAAAAATTTCGTAAATTTACCAATTTCCATTTCCTTACCTCTCATTCTATTCCAATTCTGGAAACATCACTGGAAGTTGTCCTCGAAGACCTGGAAGTTGTTGAAACGCTTTAAAGCCACTGCAAAATCCTGCAACTTGAACGTTGGAAACTAAGTACTGATTTTCCCTTATTTTCAAAATCATAGAGTTAGCCCCCATTTTTTAAAGTTTACGGAGATCACATYAAATTGAATTTATATAGAAAAACTGTGAGTTTACGAGAAATCTTTGCCGTAAACACTGTAATATAATGTCTTATAGCCGTCCACTTTGAATCAATTAATCTCGGTTCCTGAGAAGGATATCAAAAAGTTGTCAGCTAATTAAATGTTTATCACAACATCAACAATATTTTATCAGTTGACCACTTTTTGATATCTATTACAGAAACCGAGATAAATTGGCTCAAAGTTGACGTTTTGGGTGGCACTTAGAGTTTTTACGGTGGTTCGTATATTTCAACATGTATCAATGAAATTCTGATTCACTGAATTGTTGAATTAACAATATTCCAGAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24230</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>192310</contig_pos>
        <strand></strand>
        <context>ttgaatttat[A/G]tagaaaaact</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAGCCCCCATTTTTTAAAGTTTACGGAGATCACATCAAATTGAATTTAT</left_flank>
        <right_flank>TAGAAAAACTGTGAGTTTACGAGAAATCTTTGCCGTAAACACTGTAATAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAAAGTTGACTTTCAAAAATGAGTGCTGAGTTTTTTTCTCAGGTTTTCGAGGTGTTTCATAATAATTTTACAAAATGACTTTTTTCTTGATAATGCAAAACTAGCAAAATGGGTTGTCCGAACCCGAGAGTCTCGAATTTTTACCCATTCCCGTTTCCTCACCTCTCATTATATTCCGCTTCCTCGTTTCTGCCAATCTTGCCCTAGAAACCGTCCTTGCATTTGGTGCGTCCCGGAAACCAAACTGCTCCTAGAATTTGAAAAATTTCGTAAATTTACCAATTTCCATTTCCTTACCTCTCATTCTATTCCAATTCTGGAAACATCACTGGAAGTTGTCCTCGAAGACCTGGAAGTTGTTGAAACGCTTTAAAGCCACTGCAAAATCCTGCAACTTGAACGTTGGAAACTAAGTACTGATTTTCCCTTATTTTCAAAATCATAGAGTTAGCCCCCATTTTTTAAAGTTTACGGAGATCACATCAAATTGAATTTATATAGAAAAACTGTGAGTTTACGAGAAATCTTTGCCGTAAACACTGTAATATAATGTCTTATAGCCGTCCACTTTGAATCAATTAATCTCGGTTCCTGAGAAGGATATCAAAAAGTTGTCAGCTAATTAAATGTTTATCACAACATCAACAATATTTTATCAGTTGACCACTTTTTGATATCTATTACAGAAACCGAGATAAATTGGCTCAAAGTTGACGTTTTGGGTGGCACTTAGAGTTTTTACGGTGGTTCGTATATTTCAACATGTATCAATGAAATTCTGATTCACTGAATTGTTGAATTAACAATATTCCAGAATTTTTGAATTCCTGCAATCCCCCATTTTAAATTTGAGAAGAGTTGCTCAAGTCCCAAAACCTCTTGCGCGGATATTTTTGGAATTGAAAGTCTGGACGATCCAGACATTCCAGAAAACTTCGAAACCAAAATCTTAGAAAAATCAAGAATTTGCTATAACATAATTGTTGCTCTTTAGATTT</canonical>
            <polymorphic>TGGAAAGTTGACTTTCAAAAATGAGTGCTGAGTTTTTTTCTCAGGTTTTCGAGGTGTTTCATAATAATTTTACAAAATGACTTTTTTCTTGATAATGCAAAACTAGCAAAATGGGTTGTCCGAACCCGAGAGTCTCGAATTTTTACCCATTCCCGTTTCCTCACCTCTCATTATATTCCGCTTCCTCGTTTCTGCCAATCTTGCCCTAGAAACCGTCCTTGCATTTGGTGCGTCCCGGAAACCAAACTGCTCCTAGAATTTGAAAAATTTCGTAAATTTACCAATTTCCATTTCCTTACCTCTCATTCTATTCCAATTCTGGAAACATCACTGGAAGTTGTCCTCGAAGACCTGGAAGTTGTTGAAACGCTTTAAAGCCACTGCAAAATCCTGCAACTTGAACGTTGGAAACTAAGTACTGATTTTCCCTTATTTTCAAAATCATAGAGTTAGCCCCCATTTTTTAAAGTTTACGGAGATCACATCAAATTGAATTTATRTAGAAAAACTGTGAGTTTACGAGAAATCTTTGCCGTAAACACTGTAATATAATGTCTTATAGCCGTCCACTTTGAATCAATTAATCTCGGTTCCTGAGAAGGATATCAAAAAGTTGTCAGCTAATTAAATGTTTATCACAACATCAACAATATTTTATCAGTTGACCACTTTTTGATATCTATTACAGAAACCGAGATAAATTGGCTCAAAGTTGACGTTTTGGGTGGCACTTAGAGTTTTTACGGTGGTTCGTATATTTCAACATGTATCAATGAAATTCTGATTCACTGAATTGTTGAATTAACAATATTCCAGAATTTTTGAATTCCTGCAATCCCCCATTTTAAATTTGAGAAGAGTTGCTCAAGTCCCAAAACCTCTTGCGCGGATATTTTTGGAATTGAAAGTCTGGACGATCCAGACATTCCAGAAAACTTCGAAACCAAAATCTTAGAAAAATCAAGAATTTGCTATAACATAATTGTTGCTCTTTAGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTAGCAAAATGGGTTGTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTCTGGAATATTGTTAATTC</pcr_primer_p2>
		<pcr_amplicon_size>724</pcr_amplicon_size>
		<canonical_amplicon>AAACTAGCAAAATGGGTTGTCCGAACCCGAGAGTCTCGAATTTTTACCCATTCCCGTTTCCTCACCTCTCATTATATTCCGCTTCCTCGTTTCTGCCAATCTTGCCCTAGAAACCGTCCTTGCATTTGGTGCGTCCCGGAAACCAAACTGCTCCTAGAATTTGAAAAATTTCGTAAATTTACCAATTTCCATTTCCTTACCTCTCATTCTATTCCAATTCTGGAAACATCACTGGAAGTTGTCCTCGAAGACCTGGAAGTTGTTGAAACGCTTTAAAGCCACTGCAAAATCCTGCAACTTGAACGTTGGAAACTAAGTACTGATTTTCCCTTATTTTCAAAATCATAGAGTTAGCCCCCATTTTTTAAAGTTTACGGAGATCACATCAAATTGAATTTATATAGAAAAACTGTGAGTTTACGAGAAATCTTTGCCGTAAACACTGTAATATAATGTCTTATAGCCGTCCACTTTGAATCAATTAATCTCGGTTCCTGAGAAGGATATCAAAAAGTTGTCAGCTAATTAAATGTTTATCACAACATCAACAATATTTTATCAGTTGACCACTTTTTGATATCTATTACAGAAACCGAGATAAATTGGCTCAAAGTTGACGTTTTGGGTGGCACTTAGAGTTTTTACGGTGGTTCGTATATTTCAACATGTATCAATGAAATTCTGATTCACTGAATTGTTGAATTAACAATATTCCAGAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAACTAGCAAAATGGGTTGTCCGAACCCGAGAGTCTCGAATTTTTACCCATTCCCGTTTCCTCACCTCTCATTATATTCCGCTTCCTCGTTTCTGCCAATCTTGCCCTAGAAACCGTCCTTGCATTTGGTGCGTCCCGGAAACCAAACTGCTCCTAGAATTTGAAAAATTTCGTAAATTTACCAATTTCCATTTCCTTACCTCTCATTCTATTCCAATTCTGGAAACATCACTGGAAGTTGTCCTCGAAGACCTGGAAGTTGTTGAAACGCTTTAAAGCCACTGCAAAATCCTGCAACTTGAACGTTGGAAACTAAGTACTGATTTTCCCTTATTTTCAAAATCATAGAGTTAGCCCCCATTTTTTAAAGTTTACGGAGATCACATCAAATTGAATTTATRTAGAAAAACTGTGAGTTTACGAGAAATCTTTGCCGTAAACACTGTAATATAATGTCTTATAGCCGTCCACTTTGAATCAATTAATCTCGGTTCCTGAGAAGGATATCAAAAAGTTGTCAGCTAATTAAATGTTTATCACAACATCAACAATATTTTATCAGTTGACCACTTTTTGATATCTATTACAGAAACCGAGATAAATTGGCTCAAAGTTGACGTTTTGGGTGGCACTTAGAGTTTTTACGGTGGTTCGTATATTTCAACATGTATCAATGAAATTCTGATTCACTGAATTGTTGAATTAACAATATTCCAGAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24231</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>192393</contig_pos>
        <strand></strand>
        <context>tgaatcaatt[A/T]atctcggttc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCGTAAACACTGTAATATAATGTCTTATAGCCGTCCACTTTGAATCAATT</left_flank>
        <right_flank>ATCTCGGTTCCTGAGAAGGATATCAAAAAGTTGTCAGCTAATTAAATGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCTTGATAATGCAAAACTAGCAAAATGGGTTGTCCGAACCCGAGAGTCTCGAATTTTTACCCATTCCCGTTTCCTCACCTCTCATTATATTCCGCTTCCTCGTTTCTGCCAATCTTGCCCTAGAAACCGTCCTTGCATTTGGTGCGTCCCGGAAACCAAACTGCTCCTAGAATTTGAAAAATTTCGTAAATTTACCAATTTCCATTTCCTTACCTCTCATTCTATTCCAATTCTGGAAACATCACTGGAAGTTGTCCTCGAAGACCTGGAAGTTGTTGAAACGCTTTAAAGCCACTGCAAAATCCTGCAACTTGAACGTTGGAAACTAAGTACTGATTTTCCCTTATTTTCAAAATCATAGAGTTAGCCCCCATTTTTTAAAGTTTACGGAGATCACATCAAATTGAATTTATATAGAAAAACTGTGAGTTTACGAGAAATCTTTGCCGTAAACACTGTAATATAATGTCTTATAGCCGTCCACTTTGAATCAATTAATCTCGGTTCCTGAGAAGGATATCAAAAAGTTGTCAGCTAATTAAATGTTTATCACAACATCAACAATATTTTATCAGTTGACCACTTTTTGATATCTATTACAGAAACCGAGATAAATTGGCTCAAAGTTGACGTTTTGGGTGGCACTTAGAGTTTTTACGGTGGTTCGTATATTTCAACATGTATCAATGAAATTCTGATTCACTGAATTGTTGAATTAACAATATTCCAGAATTTTTGAATTCCTGCAATCCCCCATTTTAAATTTGAGAAGAGTTGCTCAAGTCCCAAAACCTCTTGCGCGGATATTTTTGGAATTGAAAGTCTGGACGATCCAGACATTCCAGAAAACTTCGAAACCAAAATCTTAGAAAAATCAAGAATTTGCTATAACATAATTGTTGCTCTTTAGATTTTGAGAAATTCAGATACCAAGTTCGAAAGTTGGAAATACTTAAAATAAAAAGTCCAGAACGCTTGATGGATTTTCATATTTCCT</canonical>
            <polymorphic>TTTTCTTGATAATGCAAAACTAGCAAAATGGGTTGTCCGAACCCGAGAGTCTCGAATTTTTACCCATTCCCGTTTCCTCACCTCTCATTATATTCCGCTTCCTCGTTTCTGCCAATCTTGCCCTAGAAACCGTCCTTGCATTTGGTGCGTCCCGGAAACCAAACTGCTCCTAGAATTTGAAAAATTTCGTAAATTTACCAATTTCCATTTCCTTACCTCTCATTCTATTCCAATTCTGGAAACATCACTGGAAGTTGTCCTCGAAGACCTGGAAGTTGTTGAAACGCTTTAAAGCCACTGCAAAATCCTGCAACTTGAACGTTGGAAACTAAGTACTGATTTTCCCTTATTTTCAAAATCATAGAGTTAGCCCCCATTTTTTAAAGTTTACGGAGATCACATCAAATTGAATTTATATAGAAAAACTGTGAGTTTACGAGAAATCTTTGCCGTAAACACTGTAATATAATGTCTTATAGCCGTCCACTTTGAATCAATTWATCTCGGTTCCTGAGAAGGATATCAAAAAGTTGTCAGCTAATTAAATGTTTATCACAACATCAACAATATTTTATCAGTTGACCACTTTTTGATATCTATTACAGAAACCGAGATAAATTGGCTCAAAGTTGACGTTTTGGGTGGCACTTAGAGTTTTTACGGTGGTTCGTATATTTCAACATGTATCAATGAAATTCTGATTCACTGAATTGTTGAATTAACAATATTCCAGAATTTTTGAATTCCTGCAATCCCCCATTTTAAATTTGAGAAGAGTTGCTCAAGTCCCAAAACCTCTTGCGCGGATATTTTTGGAATTGAAAGTCTGGACGATCCAGACATTCCAGAAAACTTCGAAACCAAAATCTTAGAAAAATCAAGAATTTGCTATAACATAATTGTTGCTCTTTAGATTTTGAGAAATTCAGATACCAAGTTCGAAAGTTGGAAATACTTAAAATAAAAAGTCCAGAACGCTTGATGGATTTTCATATTTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>289 194 177 117 92 44 44 43</canonical_bands>
                <polymorphic_bands>289 194 177 161 92 44 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTAGCAAAATGGGTTGTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTCTGGAATATTGTTAATTC</pcr_primer_p2>
		<pcr_amplicon_size>724</pcr_amplicon_size>
		<canonical_amplicon>AAACTAGCAAAATGGGTTGTCCGAACCCGAGAGTCTCGAATTTTTACCCATTCCCGTTTCCTCACCTCTCATTATATTCCGCTTCCTCGTTTCTGCCAATCTTGCCCTAGAAACCGTCCTTGCATTTGGTGCGTCCCGGAAACCAAACTGCTCCTAGAATTTGAAAAATTTCGTAAATTTACCAATTTCCATTTCCTTACCTCTCATTCTATTCCAATTCTGGAAACATCACTGGAAGTTGTCCTCGAAGACCTGGAAGTTGTTGAAACGCTTTAAAGCCACTGCAAAATCCTGCAACTTGAACGTTGGAAACTAAGTACTGATTTTCCCTTATTTTCAAAATCATAGAGTTAGCCCCCATTTTTTAAAGTTTACGGAGATCACATCAAATTGAATTTATATAGAAAAACTGTGAGTTTACGAGAAATCTTTGCCGTAAACACTGTAATATAATGTCTTATAGCCGTCCACTTTGAATCAATTAATCTCGGTTCCTGAGAAGGATATCAAAAAGTTGTCAGCTAATTAAATGTTTATCACAACATCAACAATATTTTATCAGTTGACCACTTTTTGATATCTATTACAGAAACCGAGATAAATTGGCTCAAAGTTGACGTTTTGGGTGGCACTTAGAGTTTTTACGGTGGTTCGTATATTTCAACATGTATCAATGAAATTCTGATTCACTGAATTGTTGAATTAACAATATTCCAGAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAACTAGCAAAATGGGTTGTCCGAACCCGAGAGTCTCGAATTTTTACCCATTCCCGTTTCCTCACCTCTCATTATATTCCGCTTCCTCGTTTCTGCCAATCTTGCCCTAGAAACCGTCCTTGCATTTGGTGCGTCCCGGAAACCAAACTGCTCCTAGAATTTGAAAAATTTCGTAAATTTACCAATTTCCATTTCCTTACCTCTCATTCTATTCCAATTCTGGAAACATCACTGGAAGTTGTCCTCGAAGACCTGGAAGTTGTTGAAACGCTTTAAAGCCACTGCAAAATCCTGCAACTTGAACGTTGGAAACTAAGTACTGATTTTCCCTTATTTTCAAAATCATAGAGTTAGCCCCCATTTTTTAAAGTTTACGGAGATCACATCAAATTGAATTTATATAGAAAAACTGTGAGTTTACGAGAAATCTTTGCCGTAAACACTGTAATATAATGTCTTATAGCCGTCCACTTTGAATCAATTWATCTCGGTTCCTGAGAAGGATATCAAAAAGTTGTCAGCTAATTAAATGTTTATCACAACATCAACAATATTTTATCAGTTGACCACTTTTTGATATCTATTACAGAAACCGAGATAAATTGGCTCAAAGTTGACGTTTTGGGTGGCACTTAGAGTTTTTACGGTGGTTCGTATATTTCAACATGTATCAATGAAATTCTGATTCACTGAATTGTTGAATTAACAATATTCCAGAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24232</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>192578</contig_pos>
        <strand></strand>
        <context>TTTCAACATG[T/G]ATCAATGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GTTTTGGGTGGCACTTAGAGTTTTTACGGTGGTTCGTATATTTCAACATG</left_flank>
        <right_flank>ATCAATGAAATTCTGATTCACTGAATTGTTGAATTAACAATATTCCAGAA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGTAAATTTACCAATTTCCATTTCCTTACCTCTCATTCTATTCCAATTCTGGAAACATCACTGGAAGTTGTCCTCGAAGACCTGGAAGTTGTTGAAACGCTTTAAAGCCACTGCAAAATCCTGCAACTTGAACGTTGGAAACTAAGTACTGATTTTCCCTTATTTTCAAAATCATAGAGTTAGCCCCCATTTTTTAAAGTTTACGGAGATCACATCAAATTGAATTTATATAGAAAAACTGTGAGTTTACGAGAAATCTTTGCCGTAAACACTGTAATATAATGTCTTATAGCCGTCCACTTTGAATCAATTAATCTCGGTTCCTGAGAAGGATATCAAAAAGTTGTCAGCTAATTAAATGTTTATCACAACATCAACAATATTTTATCAGTTGACCACTTTTTGATATCTATTACAGAAACCGAGATAAATTGGCTCAAAGTTGACGTTTTGGGTGGCACTTAGAGTTTTTACGGTGGTTCGTATATTTCAACATGTATCAATGAAATTCTGATTCACTGAATTGTTGAATTAACAATATTCCAGAATTTTTGAATTCCTGCAATCCCCCATTTTAAATTTGAGAAGAGTTGCTCAAGTCCCAAAACCTCTTGCGCGGATATTTTTGGAATTGAAAGTCTGGACGATCCAGACATTCCAGAAAACTTCGAAACCAAAATCTTAGAAAAATCAAGAATTTGCTATAACATAATTGTTGCTCTTTAGATTTTGAGAAATTCAGATACCAAGTTCGAAAGTTGGAAATACTTAAAATAAAAAGTCCAGAACGCTTGATGGATTTTCATATTTCCTCGCCTTCTCATGCTTCCCTCTATTTCATAATTTTGCCCATTTGAAAACTTCAAAACCCAAACTTAAAATAATTATTTTCGGATAACTTTGAGTGGATGAAGGGGCGTCATTCTCACACTCTTGGTATTTTTATTGTAAATGATGATCTCCGTATTTCAAAAATGTTGGTCGTGAAATACTCGTTC</canonical>
            <polymorphic>TTCGTAAATTTACCAATTTCCATTTCCTTACCTCTCATTCTATTCCAATTCTGGAAACATCACTGGAAGTTGTCCTCGAAGACCTGGAAGTTGTTGAAACGCTTTAAAGCCACTGCAAAATCCTGCAACTTGAACGTTGGAAACTAAGTACTGATTTTCCCTTATTTTCAAAATCATAGAGTTAGCCCCCATTTTTTAAAGTTTACGGAGATCACATCAAATTGAATTTATATAGAAAAACTGTGAGTTTACGAGAAATCTTTGCCGTAAACACTGTAATATAATGTCTTATAGCCGTCCACTTTGAATCAATTAATCTCGGTTCCTGAGAAGGATATCAAAAAGTTGTCAGCTAATTAAATGTTTATCACAACATCAACAATATTTTATCAGTTGACCACTTTTTGATATCTATTACAGAAACCGAGATAAATTGGCTCAAAGTTGACGTTTTGGGTGGCACTTAGAGTTTTTACGGTGGTTCGTATATTTCAACATGKATCAATGAAATTCTGATTCACTGAATTGTTGAATTAACAATATTCCAGAATTTTTGAATTCCTGCAATCCCCCATTTTAAATTTGAGAAGAGTTGCTCAAGTCCCAAAACCTCTTGCGCGGATATTTTTGGAATTGAAAGTCTGGACGATCCAGACATTCCAGAAAACTTCGAAACCAAAATCTTAGAAAAATCAAGAATTTGCTATAACATAATTGTTGCTCTTTAGATTTTGAGAAATTCAGATACCAAGTTCGAAAGTTGGAAATACTTAAAATAAAAAGTCCAGAACGCTTGATGGATTTTCATATTTCCTCGCCTTCTCATGCTTCCCTCTATTTCATAATTTTGCCCATTTGAAAACTTCAAAACCCAAACTTAAAATAATTATTTTCGGATAACTTTGAGTGGATGAAGGGGCGTCATTCTCACACTCTTGGTATTTTTATTGTAAATGATGATCTCCGTATTTCAAAAATGTTGGTCGTGAAATACTCGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTAGCAAAATGGGTTGTC</pcr_primer_p1>
		<pcr_primer_p2>TCAAAAATTCTGGAATATTGTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>726</pcr_amplicon_size>
		<canonical_amplicon>GTATCAATGAAATTCTGATTCACTGAATTGTTGAATTAACAATATTCCAGAATTTTTGA</canonical_amplicon>
		<polymorphic_amplicon>GKATCAATGAAATTCTGATTCACTGAATTGTTGAATTAACAATATTCCAGAATTTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24233</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>194192</contig_pos>
        <strand>+</strand>
        <context>TAGAGTTCTT[A/C]AAAAATCAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGGGACATATGGATTGATGAGATGAAACTACCACGTAAACTAGAGTTCTT</left_flank>
        <right_flank>AAAAATCAGATCAGCTTCGCTCCGATGAAAATACAAGATTCTCTAACCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTAAAAAACTCAAAAATTTTGCATTTTTCTATTACAGTAATCTCACTTGTGATGACGTCAATCCGATTTTCGAGCAAGTGGCTCAAGAATACTCGGAACAGATCTTGGCTCTGTATGTAAATTATTCATGCCAAAGTCTCGGTAAATTAGTAAAACAACATTAAGTGTATTGGTCCCTCATGTTTTCAGTGGACGGGACCGATTTCACTGTGGAAGCAACACCAACTGTTATTGTCGGGATCAATGGAATAGAAAGCTGCGAGGATAAACTTGTCGAATCGCAGATTACCGAAGAATCGCTCCGTGCTCTTTTCCAGAAATACTGTAACTGATTTCCTGTATAACTTCTTTTTTTTTTTGATACATTTGTTATGTCTCCGAATAAAACGAATTTAATAAAGGATTTTTTGAATAAGGAAATTGATTTATTGGTCGTCCAAAGTCGATAGGGACATATGGATTGATGAGATGAAACTACCACGTAAACTAGAGTTCTTAAAAAATCAGATCAGCTTCGCTCCGATGAAAATACAAGATTCTCTAACCACATTCCGTATTTGTCCCAAATTGCTTCTTGAAGGAAAAGTGCATAACCAACGCCGAATAGTGATCCGCCAAGATGGGCTGCGTGATCGAATAGACGGAATCTGAAACCCATGATCATTGATTCATTATTTGCCCAATAGATAGTCTACCGTAAGAACAGCCCAAGAAGGTCAAATGCAATGATTCCATATACTGCACTTTTGGCGGAGAATTCAAATCCGGGTACGAATATCAACGAAAGTCGAGCTGAAATTCAATAATAACTGATCGTTCGAAGTAAATGAATGTTCCAACCATCTGGGATCTGCATACAAGTGTATGTGAGGACAGCTAGAATAGCTCCACTTGCTCCGAGAGCTCTGATTCCGGATCGCATCACTGCTTTGTCCACCAAGCTTATAAAAGATGAAACTACAGCGGCGGTAATGTAGAAAGACCAGAATTTCTCGGGT</canonical>
            <polymorphic>ATTTAAAAAACTCAAAAATTTTGCATTTTTCTATTACAGTAATCTCACTTGTGATGACGTCAATCCGATTTTCGAGCAAGTGGCTCAAGAATACTCGGAACAGATCTTGGCTCTGTATGTAAATTATTCATGCCAAAGTCTCGGTAAATTAGTAAAACAACATTAAGTGTATTGGTCCCTCATGTTTTCAGTGGACGGGACCGATTTCACTGTGGAAGCAACACCAACTGTTATTGTCGGGATCAATGGAATAGAAAGCTGCGAGGATAAACTTGTCGAATCGCAGATTACCGAAGAATCGCTCCGTGCTCTTTTCCAGAAATACTGTAACTGATTTCCTGTATAACTTCTTTTTTTTTTTGATACATTTGTTATGTCTCCGAATAAAACGAATTTAATAAAGGATTTTTTGAATAAGGAAATTGATTTATTGGTCGTCCAAAGTCGATAGGGACATATGGATTGATGAGATGAAACTACCACGTAAACTAGAGTTCTTMAAAAATCAGATCAGCTTCGCTCCGATGAAAATACAAGATTCTCTAACCACATTCCGTATTTGTCCCAAATTGCTTCTTGAAGGAAAAGTGCATAACCAACGCCGAATAGTGATCCGCCAAGATGGGCTGCGTGATCGAATAGACGGAATCTGAAACCCATGATCATTGATTCATTATTTGCCCAATAGATAGTCTACCGTAAGAACAGCCCAAGAAGGTCAAATGCAATGATTCCATATACTGCACTTTTGGCGGAGAATTCAAATCCGGGTACGAATATCAACGAAAGTCGAGCTGAAATTCAATAATAACTGATCGTTCGAAGTAAATGAATGTTCCAACCATCTGGGATCTGCATACAAGTGTATGTGAGGACAGCTAGAATAGCTCCACTTGCTCCGAGAGCTCTGATTCCGGATCGCATCACTGCTTTGTCCACCAAGCTTATAAAAGATGAAACTACAGCGGCGGTAATGTAGAAAGACCAGAATTTCTCGGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 232 160 103 3</canonical_bands>
                <polymorphic_bands>605 232 160 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTTCCAGAAATACTGTAACTGA</pcr_primer_p1>
		<pcr_primer_p2>AATACGGAATGTGGTTAGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTTCCAGAAATACTGTAACTGATTTCCTGTATAACTTCTTTTTTTTTTTGATACATTTGTTATGTCTCCGAATAAAACGAATTTAATAAAGGATTTTTTGAATAAGGAAATTGATTTATTGGTCGTCCAAAGTCGATAGGGACATATGGATTGATGAGATGAAACTACCACGTAAACTAGAGTTCTTAAAAAATCAGATCAGCTTCGCTCCGATGAAAATACAAGATTCTCTAACCACATTCCGTATT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTCCAGAAATACTGTAACTGATTTCCTGTATAACTTCTTTTTTTTTTTGATACATTTGTTATGTCTCCGAATAAAACGAATTTAATAAAGGATTTTTTGAATAAGGAAATTGATTTATTGGTCGTCCAAAGTCGATAGGGACATATGGATTGATGAGATGAAACTACCACGTAAACTAGAGTTCTTMAAAAATCAGATCAGCTTCGCTCCGATGAAAATACAAGATTCTCTAACCACATTCCGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24234</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>309688</contig_pos>
        <strand>+</strand>
        <context>TTCATCAGCA[A/C]CCGTTCGGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTAGTTATCTTCGGAAAAGAAGTTTTCAAATGGTGCCAGTTCATCAGCA</left_flank>
        <right_flank>CCGTTCGGAATAATGAATCAGTCATCTCCCTTGGAACTACTACTTCCCTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTCTGCGTCTCAACCTTTTTTTTTCTCAGACAAGGATAATAATTGAAAAGGATTATCTTAATCAAAACACGATAGATGGAAACGAATCCTCGCACAAGAAAATTAATTTTTCGAAATTTTCCTCCGCCCGCAAACACAATGCGAAATGCATCGAATATTACGACATTTGCGTACTTCAATGTTGACCGTAGTCGACTAAAAAAAATCGAATTTCTCCGTTTCGAAACCTTATTCAACATACTTTTATCAGGTCATCGGTGTAATCAAAAAATATTTATCTAATAAATGGTAAAGAAGAAAAGTAATTATCATATTCTTGTTGCTCAAAACTTCCTGTCCAATATCAGTATAGATGGCACCCACCAAGATACAAACCTACGCATTTTTCAAGCAAAAGGACTTCCGAAAGTAATTCAGCACATCTATGATATTTAAATTATGATTTCGTTTAGTTATCTTCGGAAAAGAAGTTTTCAAATGGTGCCAGTTCATCAGCACCCGTTCGGAATAATGAATCAGTCATCTCCCTTGGAACTACTACTTCCCTTGGCGACAGATTGGTGAGTGTTTAGTTTTTCATTTTCAAGTATTTATTAACACTACGCTCTTCAGAGTTCCTCGAATCTACCACTCGATTATCTAGAAAGTGATCAAAATGGAGTTTATCTCAACAACAATTCTCGGGAAACGCCTCAAAAGAAGTGATATAATACTTCTAGACCGAAACAACGATTTTCTCCATTTTTCAGAACTTCCATATTCAAACGAATTGCAAAGATAATGAGCTCTGACGATGTAATTTATTCGATGACAGCCACAAATAGCCGAACCCCGATTCTGGAAGAAGGAGTGGGTCGAGAGGATAGTGGGCTGCTCGGTATGCGTCGTTTTACTGTCAAATGCTCTATTCCTAACCAGAACTAACAACTTTTATTTTTTAGAGTTTCGGTCAGAATCTCCATCTTGTTCCTCAAATCAGTTCAGTTTTCTAAGGAGAT</canonical>
            <polymorphic>TTCTCTGCGTCTCAACCTTTTTTTTTCTCAGACAAGGATAATAATTGAAAAGGATTATCTTAATCAAAACACGATAGATGGAAACGAATCCTCGCACAAGAAAATTAATTTTTCGAAATTTTCCTCCGCCCGCAAACACAATGCGAAATGCATCGAATATTACGACATTTGCGTACTTCAATGTTGACCGTAGTCGACTAAAAAAAATCGAATTTCTCCGTTTCGAAACCTTATTCAACATACTTTTATCAGGTCATCGGTGTAATCAAAAAATATTTATCTAATAAATGGTAAAGAAGAAAAGTAATTATCATATTCTTGTTGCTCAAAACTTCCTGTCCAATATCAGTATAGATGGCACCCACCAAGATACAAACCTACGCATTTTTCAAGCAAAAGGACTTCCGAAAGTAATTCAGCACATCTATGATATTTAAATTATGATTTCGTTTAGTTATCTTCGGAAAAGAAGTTTTCAAATGGTGCCAGTTCATCAGCAMCCGTTCGGAATAATGAATCAGTCATCTCCCTTGGAACTACTACTTCCCTTGGCGACAGATTGGTGAGTGTTTAGTTTTTCATTTTCAAGTATTTATTAACACTACGCTCTTCAGAGTTCCTCGAATCTACCACTCGATTATCTAGAAAGTGATCAAAATGGAGTTTATCTCAACAACAATTCTCGGGAAACGCCTCAAAAGAAGTGATATAATACTTCTAGACCGAAACAACGATTTTCTCCATTTTTCAGAACTTCCATATTCAAACGAATTGCAAAGATAATGAGCTCTGACGATGTAATTTATTCGATGACAGCCACAAATAGCCGAACCCCGATTCTGGAAGAAGGAGTGGGTCGAGAGGATAGTGGGCTGCTCGGTATGCGTCGTTTTACTGTCAAATGCTCTATTCCTAACCAGAACTAACAACTTTTATTTTTTAGAGTTTCGGTCAGAATCTCCATCTTGTTCCTCAAATCAGTTCAGTTTTCTAAGGAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>130 124 113 98 71 66 64 57 55 42 35 32 31 25 19 16 14 4 4</canonical_bands>
                <polymorphic_bands>130 124 113 98 80 71 64 57 55 42 35 32 31 25 19 16 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTTCCTGTCCAATATCAGTA</pcr_primer_p1>
		<pcr_primer_p2>AAAACTAAACACTCACCAATCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACTTCCTGTCCAATATCAGTATAGATGGCACCCACCAAGATACAAACCTACGCATTTTTCAAGCAAAAGGACTTCCGAAAGTAATTCAGCACATCTATGATATTTAAATTATGATTTCGTTTAGTTATCTTCGGAAAAGAAGTTTTCAAATGGTGCCAGTTCATCAGCACCCGTTCGGAATAATGAATCAGTCATCTCCCTTGGAACTACTACTTCCCTTGGCGACAGATTGGTGAGTGTTTAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAACTTCCTGTCCAATATCAGTATAGATGGCACCCACCAAGATACAAACCTACGCATTTTTCAAGCAAAAGGACTTCCGAAAGTAATTCAGCACATCTATGATATTTAAATTATGATTTCGTTTAGTTATCTTCGGAAAAGAAGTTTTCAAATGGTGCCAGTTCATCAGCAMCCGTTCGGAATAATGAATCAGTCATCTCCCTTGGAACTACTACTTCCCTTGGCGACAGATTGGTGAGTGTTTAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24235</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>362928</contig_pos>
        <strand>+</strand>
        <context>TCTTCGTTAA[C/T]CTCCATCTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCAGAAACATCAACATTCGCACCCATCACCACTTGGACGTCTTCGTTAA</left_flank>
        <right_flank>CTCCATCTTGTTATCTGAATTCTCAGGAAATTCGAAAAAAGTAATCGGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTTTGTATAGTAGTTGGCTGAAAAGTAGTTGGCACAACAGATGTACTATTTATAGAGGTTGTTGATGTTTGCTGAGGTGTAGAAGTAGTTTGCGAAGATCTAAAAAATAATACAGCACAAATCCAAGCATAAAAATTTTTCTTACGTTTCACATATTCCCGAAAAATCACAAAGAGCTTTTGAACGGTAGTGCAGAAAAAACGCCTCAAAAATTGTGTCGTTATCTGAATGAATTAGTTATTCAGGCTTTAAAAAATTCCGATATGACACCTTTAGTTGGTCCAATGATTATTCCAACAATTGAAAATGCGTTCTTTCCGGAAATCACAAATCCATGAGTTCCTTTGAATGCTTTCAAACAGAAGATTGAGGGTTTCTGAGATGGACACTGGACAACCTATAAAGAAATTATGTTGACAAAATTAAACAGAAAACGAGTAAACCTTTGCAGAAACATCAACATTCGCACCCATCACCACTTGGACGTCTTCGTTAATCTCCATCTTGTTATCTGAATTCTCAGGAAATTCGAAAAAAGTAATCGGAAAAAAACCCACTTCGAACACAAAACCATTTATCCTGAGGATGTTTATTCTCTGGATGAGAATCTCCTAGAATCATTCCAGTTGGTTCGTTCTTACACTCTCCAATCAATTTTGCAGAAAAGTTGCCTGTTGTATTGAGGAAATTTGAGACACTGTTCCCACGACTGAAACTCAGAAGTTCAACTTTGACTCCTTGATTACATATTACTTACGTTCCACATTCCATTGAATGATAATTGGTCAGGATACGAATATCAGTCAGGAAATGACGAGGAGAGATGTAAGCAAGGAGAACATCGTCTTTGGTTTTTGAAATCCCCTCTTTCAAACTGAAGAAAAAAGTGTCTTTATGAAGGAATATTAACATACTCTTTGAATTTCCCACATTTGGATAATGTCTCAGTGATCTCCGCATCGGATAGCTTCGAAAATTCTTCTTTCGTACATAAAAC</canonical>
            <polymorphic>GAATTTTGTATAGTAGTTGGCTGAAAAGTAGTTGGCACAACAGATGTACTATTTATAGAGGTTGTTGATGTTTGCTGAGGTGTAGAAGTAGTTTGCGAAGATCTAAAAAATAATACAGCACAAATCCAAGCATAAAAATTTTTCTTACGTTTCACATATTCCCGAAAAATCACAAAGAGCTTTTGAACGGTAGTGCAGAAAAAACGCCTCAAAAATTGTGTCGTTATCTGAATGAATTAGTTATTCAGGCTTTAAAAAATTCCGATATGACACCTTTAGTTGGTCCAATGATTATTCCAACAATTGAAAATGCGTTCTTTCCGGAAATCACAAATCCATGAGTTCCTTTGAATGCTTTCAAACAGAAGATTGAGGGTTTCTGAGATGGACACTGGACAACCTATAAAGAAATTATGTTGACAAAATTAAACAGAAAACGAGTAAACCTTTGCAGAAACATCAACATTCGCACCCATCACCACTTGGACGTCTTCGTTAAYCTCCATCTTGTTATCTGAATTCTCAGGAAATTCGAAAAAAGTAATCGGAAAAAAACCCACTTCGAACACAAAACCATTTATCCTGAGGATGTTTATTCTCTGGATGAGAATCTCCTAGAATCATTCCAGTTGGTTCGTTCTTACACTCTCCAATCAATTTTGCAGAAAAGTTGCCTGTTGTATTGAGGAAATTTGAGACACTGTTCCCACGACTGAAACTCAGAAGTTCAACTTTGACTCCTTGATTACATATTACTTACGTTCCACATTCCATTGAATGATAATTGGTCAGGATACGAATATCAGTCAGGAAATGACGAGGAGAGATGTAAGCAAGGAGAACATCGTCTTTGGTTTTTGAAATCCCCTCTTTCAAACTGAAGAAAAAAGTGTCTTTATGAAGGAATATTAACATACTCTTTGAATTTCCCACATTTGGATAATGTCTCAGTGATCTCCGCATCGGATAGCTTCGAAAATTCTTCTTTCGTACATAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTGACAAAATTAAACAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAATTGATTGGAGAGTGTAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTTGACAAAATTAAACAGAAAACGAGTAAACCTTTGCAGAAACATCAACATTCGCACCCATCACCACTTGGACGTCTTCGTTAATCTCCATCTTGTTATCTGAATTCTCAGGAAATTCGAAAAAAGTAATCGGAAAAAAACCCACTTCGAACACAAAACCATTTATCCTGAGGATGTTTATTCTCTGGATGAGAATCTCCTAGAATCATTCCAGTTGGTTCGTTCTTACACTCTCCAATCAATTTTG</canonical_amplicon>
		<polymorphic_amplicon>TGTTGACAAAATTAAACAGAAAACGAGTAAACCTTTGCAGAAACATCAACATTCGCACCCATCACCACTTGGACGTCTTCGTTAAYCTCCATCTTGTTATCTGAATTCTCAGGAAATTCGAAAAAAGTAATCGGAAAAAAACCCACTTCGAACACAAAACCATTTATCCTGAGGATGTTTATTCTCTGGATGAGAATCTCCTAGAATCATTCCAGTTGGTTCGTTCTTACACTCTCCAATCAATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24236</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>363022</contig_pos>
        <strand>+</strand>
        <context>TGAGGATGTT[C/T]ATTCTCTGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCGGAAAAAAACCCACTTCGAACACAAAACCATTTATCCTGAGGATGTT</left_flank>
        <right_flank>ATTCTCTGGATGAGAATCTCCTAGAATCATTCCAGTTGGTTCGTTCTTAC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGAAGATCTAAAAAATAATACAGCACAAATCCAAGCATAAAAATTTTTCTTACGTTTCACATATTCCCGAAAAATCACAAAGAGCTTTTGAACGGTAGTGCAGAAAAAACGCCTCAAAAATTGTGTCGTTATCTGAATGAATTAGTTATTCAGGCTTTAAAAAATTCCGATATGACACCTTTAGTTGGTCCAATGATTATTCCAACAATTGAAAATGCGTTCTTTCCGGAAATCACAAATCCATGAGTTCCTTTGAATGCTTTCAAACAGAAGATTGAGGGTTTCTGAGATGGACACTGGACAACCTATAAAGAAATTATGTTGACAAAATTAAACAGAAAACGAGTAAACCTTTGCAGAAACATCAACATTCGCACCCATCACCACTTGGACGTCTTCGTTAATCTCCATCTTGTTATCTGAATTCTCAGGAAATTCGAAAAAAGTAATCGGAAAAAAACCCACTTCGAACACAAAACCATTTATCCTGAGGATGTTTATTCTCTGGATGAGAATCTCCTAGAATCATTCCAGTTGGTTCGTTCTTACACTCTCCAATCAATTTTGCAGAAAAGTTGCCTGTTGTATTGAGGAAATTTGAGACACTGTTCCCACGACTGAAACTCAGAAGTTCAACTTTGACTCCTTGATTACATATTACTTACGTTCCACATTCCATTGAATGATAATTGGTCAGGATACGAATATCAGTCAGGAAATGACGAGGAGAGATGTAAGCAAGGAGAACATCGTCTTTGGTTTTTGAAATCCCCTCTTTCAAACTGAAGAAAAAAGTGTCTTTATGAAGGAATATTAACATACTCTTTGAATTTCCCACATTTGGATAATGTCTCAGTGATCTCCGCATCGGATAGCTTCGAAAATTCTTCTTTCGTACATAAAACAAAAGAAACCAAGAGTAGCAATTTGATGAACGCTCCAATTGAGACCATCGTTCTTCTATGAACCGATCACAGTGGAAATGTATCTTCCAACGAT</canonical>
            <polymorphic>GCGAAGATCTAAAAAATAATACAGCACAAATCCAAGCATAAAAATTTTTCTTACGTTTCACATATTCCCGAAAAATCACAAAGAGCTTTTGAACGGTAGTGCAGAAAAAACGCCTCAAAAATTGTGTCGTTATCTGAATGAATTAGTTATTCAGGCTTTAAAAAATTCCGATATGACACCTTTAGTTGGTCCAATGATTATTCCAACAATTGAAAATGCGTTCTTTCCGGAAATCACAAATCCATGAGTTCCTTTGAATGCTTTCAAACAGAAGATTGAGGGTTTCTGAGATGGACACTGGACAACCTATAAAGAAATTATGTTGACAAAATTAAACAGAAAACGAGTAAACCTTTGCAGAAACATCAACATTCGCACCCATCACCACTTGGACGTCTTCGTTAATCTCCATCTTGTTATCTGAATTCTCAGGAAATTCGAAAAAAGTAATCGGAAAAAAACCCACTTCGAACACAAAACCATTTATCCTGAGGATGTTYATTCTCTGGATGAGAATCTCCTAGAATCATTCCAGTTGGTTCGTTCTTACACTCTCCAATCAATTTTGCAGAAAAGTTGCCTGTTGTATTGAGGAAATTTGAGACACTGTTCCCACGACTGAAACTCAGAAGTTCAACTTTGACTCCTTGATTACATATTACTTACGTTCCACATTCCATTGAATGATAATTGGTCAGGATACGAATATCAGTCAGGAAATGACGAGGAGAGATGTAAGCAAGGAGAACATCGTCTTTGGTTTTTGAAATCCCCTCTTTCAAACTGAAGAAAAAAGTGTCTTTATGAAGGAATATTAACATACTCTTTGAATTTCCCACATTTGGATAATGTCTCAGTGATCTCCGCATCGGATAGCTTCGAAAATTCTTCTTTCGTACATAAAACAAAAGAAACCAAGAGTAGCAATTTGATGAACGCTCCAATTGAGACCATCGTTCTTCTATGAACCGATCACAGTGGAAATGTATCTTCCAACGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTGACAAAATTAAACAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAATTGATTGGAGAGTGTAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTTGACAAAATTAAACAGAAAACGAGTAAACCTTTGCAGAAACATCAACATTCGCACCCATCACCACTTGGACGTCTTCGTTAATCTCCATCTTGTTATCTGAATTCTCAGGAAATTCGAAAAAAGTAATCGGAAAAAAACCCACTTCGAACACAAAACCATTTATCCTGAGGATGTTTATTCTCTGGATGAGAATCTCCTAGAATCATTCCAGTTGGTTCGTTCTTACACTCTCCAATCAATTTTG</canonical_amplicon>
		<polymorphic_amplicon>TGTTGACAAAATTAAACAGAAAACGAGTAAACCTTTGCAGAAACATCAACATTCGCACCCATCACCACTTGGACGTCTTCGTTAATCTCCATCTTGTTATCTGAATTCTCAGGAAATTCGAAAAAAGTAATCGGAAAAAAACCCACTTCGAACACAAAACCATTTATCCTGAGGATGTTYATTCTCTGGATGAGAATCTCCTAGAATCATTCCAGTTGGTTCGTTCTTACACTCTCCAATCAATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24237</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>363207</contig_pos>
        <strand>+</strand>
        <context>TTCCATTGAA[C/T]GATAATTGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAACTTTGACTCCTTGATTACATATTACTTACGTTCCACATTCCATTGAA</left_flank>
        <right_flank>GATAATTGGTCAGGATACGAATATCAGTCAGGAAATGACGAGGAGAGATG</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGTCCAATGATTATTCCAACAATTGAAAATGCGTTCTTTCCGGAAATCACAAATCCATGAGTTCCTTTGAATGCTTTCAAACAGAAGATTGAGGGTTTCTGAGATGGACACTGGACAACCTATAAAGAAATTATGTTGACAAAATTAAACAGAAAACGAGTAAACCTTTGCAGAAACATCAACATTCGCACCCATCACCACTTGGACGTCTTCGTTAATCTCCATCTTGTTATCTGAATTCTCAGGAAATTCGAAAAAAGTAATCGGAAAAAAACCCACTTCGAACACAAAACCATTTATCCTGAGGATGTTTATTCTCTGGATGAGAATCTCCTAGAATCATTCCAGTTGGTTCGTTCTTACACTCTCCAATCAATTTTGCAGAAAAGTTGCCTGTTGTATTGAGGAAATTTGAGACACTGTTCCCACGACTGAAACTCAGAAGTTCAACTTTGACTCCTTGATTACATATTACTTACGTTCCACATTCCATTGAATGATAATTGGTCAGGATACGAATATCAGTCAGGAAATGACGAGGAGAGATGTAAGCAAGGAGAACATCGTCTTTGGTTTTTGAAATCCCCTCTTTCAAACTGAAGAAAAAAGTGTCTTTATGAAGGAATATTAACATACTCTTTGAATTTCCCACATTTGGATAATGTCTCAGTGATCTCCGCATCGGATAGCTTCGAAAATTCTTCTTTCGTACATAAAACAAAAGAAACCAAGAGTAGCAATTTGATGAACGCTCCAATTGAGACCATCGTTCTTCTATGAACCGATCACAGTGGAAATGTATCTTCCAACGATTTTAAACCTCTTCTTTTTACAATTTTCTCCAACTCATTGTTTAATTATAGAATGTTCCCACGGTAATCCATTTTTAATGTATTTATTTATCCTCCCGATGTTCCTCTTTGCTTCCCCCGAAACTTCTCAGACGCTCTGACCAAGTTTTTTCTTTTTCTTTTTTTCGTTTTTCGTGTTTCCTCTTC</canonical>
            <polymorphic>TTGGTCCAATGATTATTCCAACAATTGAAAATGCGTTCTTTCCGGAAATCACAAATCCATGAGTTCCTTTGAATGCTTTCAAACAGAAGATTGAGGGTTTCTGAGATGGACACTGGACAACCTATAAAGAAATTATGTTGACAAAATTAAACAGAAAACGAGTAAACCTTTGCAGAAACATCAACATTCGCACCCATCACCACTTGGACGTCTTCGTTAATCTCCATCTTGTTATCTGAATTCTCAGGAAATTCGAAAAAAGTAATCGGAAAAAAACCCACTTCGAACACAAAACCATTTATCCTGAGGATGTTTATTCTCTGGATGAGAATCTCCTAGAATCATTCCAGTTGGTTCGTTCTTACACTCTCCAATCAATTTTGCAGAAAAGTTGCCTGTTGTATTGAGGAAATTTGAGACACTGTTCCCACGACTGAAACTCAGAAGTTCAACTTTGACTCCTTGATTACATATTACTTACGTTCCACATTCCATTGAAYGATAATTGGTCAGGATACGAATATCAGTCAGGAAATGACGAGGAGAGATGTAAGCAAGGAGAACATCGTCTTTGGTTTTTGAAATCCCCTCTTTCAAACTGAAGAAAAAAGTGTCTTTATGAAGGAATATTAACATACTCTTTGAATTTCCCACATTTGGATAATGTCTCAGTGATCTCCGCATCGGATAGCTTCGAAAATTCTTCTTTCGTACATAAAACAAAAGAAACCAAGAGTAGCAATTTGATGAACGCTCCAATTGAGACCATCGTTCTTCTATGAACCGATCACAGTGGAAATGTATCTTCCAACGATTTTAAACCTCTTCTTTTTACAATTTTCTCCAACTCATTGTTTAATTATAGAATGTTCCCACGGTAATCCATTTTTAATGTATTTATTTATCCTCCCGATGTTCCTCTTTGCTTCCCCCGAAACTTCTCAGACGCTCTGACCAAGTTTTTTCTTTTTCTTTTTTTCGTTTTTCGTGTTTCCTCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTACACTCTCCAATCAATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTTCAGTTTGAAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTACACTCTCCAATCAATTTTGCAGAAAAGTTGCCTGTTGTATTGAGGAAATTTGAGACACTGTTCCCACGACTGAAACTCAGAAGTTCAACTTTGACTCCTTGATTACATATTACTTACGTTCCACATTCCATTGAATGATAATTGGTCAGGATACGAATATCAGTCAGGAAATGACGAGGAGAGATGTAAGCAAGGAGAACATCGTCTTTGGTTTTTGAAATCCCCTCTTTCAAACTGAAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTACACTCTCCAATCAATTTTGCAGAAAAGTTGCCTGTTGTATTGAGGAAATTTGAGACACTGTTCCCACGACTGAAACTCAGAAGTTCAACTTTGACTCCTTGATTACATATTACTTACGTTCCACATTCCATTGAAYGATAATTGGTCAGGATACGAATATCAGTCAGGAAATGACGAGGAGAGATGTAAGCAAGGAGAACATCGTCTTTGGTTTTTGAAATCCCCTCTTTCAAACTGAAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24238</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>363271</contig_pos>
        <strand>+</strand>
        <context>GCAAGGAGAA[C/T]ATCGTCTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATACGAATATCAGTCAGGAAATGACGAGGAGAGATGTAAGCAAGGAGAA</left_flank>
        <right_flank>ATCGTCTTTGGTTTTTGAAATCCCCTCTTTCAAACTGAAGAAAAAAGTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTTTGAATGCTTTCAAACAGAAGATTGAGGGTTTCTGAGATGGACACTGGACAACCTATAAAGAAATTATGTTGACAAAATTAAACAGAAAACGAGTAAACCTTTGCAGAAACATCAACATTCGCACCCATCACCACTTGGACGTCTTCGTTAATCTCCATCTTGTTATCTGAATTCTCAGGAAATTCGAAAAAAGTAATCGGAAAAAAACCCACTTCGAACACAAAACCATTTATCCTGAGGATGTTTATTCTCTGGATGAGAATCTCCTAGAATCATTCCAGTTGGTTCGTTCTTACACTCTCCAATCAATTTTGCAGAAAAGTTGCCTGTTGTATTGAGGAAATTTGAGACACTGTTCCCACGACTGAAACTCAGAAGTTCAACTTTGACTCCTTGATTACATATTACTTACGTTCCACATTCCATTGAATGATAATTGGTCAGGATACGAATATCAGTCAGGAAATGACGAGGAGAGATGTAAGCAAGGAGAACATCGTCTTTGGTTTTTGAAATCCCCTCTTTCAAACTGAAGAAAAAAGTGTCTTTATGAAGGAATATTAACATACTCTTTGAATTTCCCACATTTGGATAATGTCTCAGTGATCTCCGCATCGGATAGCTTCGAAAATTCTTCTTTCGTACATAAAACAAAAGAAACCAAGAGTAGCAATTTGATGAACGCTCCAATTGAGACCATCGTTCTTCTATGAACCGATCACAGTGGAAATGTATCTTCCAACGATTTTAAACCTCTTCTTTTTACAATTTTCTCCAACTCATTGTTTAATTATAGAATGTTCCCACGGTAATCCATTTTTAATGTATTTATTTATCCTCCCGATGTTCCTCTTTGCTTCCCCCGAAACTTCTCAGACGCTCTGACCAAGTTTTTTCTTTTTCTTTTTTTCGTTTTTCGTGTTTCCTCTTCCTCTTCCTCTTCCTCTTCCCCCGCGACTCCGCCTACTGCACACAAAACATAGTGGAAGGCGGAA</canonical>
            <polymorphic>TCCTTTGAATGCTTTCAAACAGAAGATTGAGGGTTTCTGAGATGGACACTGGACAACCTATAAAGAAATTATGTTGACAAAATTAAACAGAAAACGAGTAAACCTTTGCAGAAACATCAACATTCGCACCCATCACCACTTGGACGTCTTCGTTAATCTCCATCTTGTTATCTGAATTCTCAGGAAATTCGAAAAAAGTAATCGGAAAAAAACCCACTTCGAACACAAAACCATTTATCCTGAGGATGTTTATTCTCTGGATGAGAATCTCCTAGAATCATTCCAGTTGGTTCGTTCTTACACTCTCCAATCAATTTTGCAGAAAAGTTGCCTGTTGTATTGAGGAAATTTGAGACACTGTTCCCACGACTGAAACTCAGAAGTTCAACTTTGACTCCTTGATTACATATTACTTACGTTCCACATTCCATTGAATGATAATTGGTCAGGATACGAATATCAGTCAGGAAATGACGAGGAGAGATGTAAGCAAGGAGAAYATCGTCTTTGGTTTTTGAAATCCCCTCTTTCAAACTGAAGAAAAAAGTGTCTTTATGAAGGAATATTAACATACTCTTTGAATTTCCCACATTTGGATAATGTCTCAGTGATCTCCGCATCGGATAGCTTCGAAAATTCTTCTTTCGTACATAAAACAAAAGAAACCAAGAGTAGCAATTTGATGAACGCTCCAATTGAGACCATCGTTCTTCTATGAACCGATCACAGTGGAAATGTATCTTCCAACGATTTTAAACCTCTTCTTTTTACAATTTTCTCCAACTCATTGTTTAATTATAGAATGTTCCCACGGTAATCCATTTTTAATGTATTTATTTATCCTCCCGATGTTCCTCTTTGCTTCCCCCGAAACTTCTCAGACGCTCTGACCAAGTTTTTTCTTTTTCTTTTTTTCGTTTTTCGTGTTTCCTCTTCCTCTTCCTCTTCCTCTTCCCCCGCGACTCCGCCTACTGCACACAAAACATAGTGGAAGGCGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTGAGGAAATTTGAGACACTG</pcr_primer_p1>
		<pcr_primer_p2>TGGGAAATTCAAAGAGTATGTTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATTGAGGAAATTTGAGACACTGTTCCCACGACTGAAACTCAGAAGTTCAACTTTGACTCCTTGATTACATATTACTTACGTTCCACATTCCATTGAATGATAATTGGTCAGGATACGAATATCAGTCAGGAAATGACGAGGAGAGATGTAAGCAAGGAGAACATCGTCTTTGGTTTTTGAAATCCCCTCTTTCAAACTGAAGAAAAAAGTGTCTTTATGAAGGAATATTAACATACTCTTTGAATTTCCCA</canonical_amplicon>
		<polymorphic_amplicon>TATTGAGGAAATTTGAGACACTGTTCCCACGACTGAAACTCAGAAGTTCAACTTTGACTCCTTGATTACATATTACTTACGTTCCACATTCCATTGAATGATAATTGGTCAGGATACGAATATCAGTCAGGAAATGACGAGGAGAGATGTAAGCAAGGAGAAYATCGTCTTTGGTTTTTGAAATCCCCTCTTTCAAACTGAAGAAAAAAGTGTCTTTATGAAGGAATATTAACATACTCTTTGAATTTCCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24239</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>363381</contig_pos>
        <strand>+</strand>
        <context>ATGTCTCAGT[A/G]ATCTCCGCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAATATTAACATACTCTTTGAATTTCCCACATTTGGATAATGTCTCAGT</left_flank>
        <right_flank>ATCTCCGCATCGGATAGCTTCGAAAATTCTTCTTTCGTACATAAAACAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAACATCAACATTCGCACCCATCACCACTTGGACGTCTTCGTTAATCTCCATCTTGTTATCTGAATTCTCAGGAAATTCGAAAAAAGTAATCGGAAAAAAACCCACTTCGAACACAAAACCATTTATCCTGAGGATGTTTATTCTCTGGATGAGAATCTCCTAGAATCATTCCAGTTGGTTCGTTCTTACACTCTCCAATCAATTTTGCAGAAAAGTTGCCTGTTGTATTGAGGAAATTTGAGACACTGTTCCCACGACTGAAACTCAGAAGTTCAACTTTGACTCCTTGATTACATATTACTTACGTTCCACATTCCATTGAATGATAATTGGTCAGGATACGAATATCAGTCAGGAAATGACGAGGAGAGATGTAAGCAAGGAGAACATCGTCTTTGGTTTTTGAAATCCCCTCTTTCAAACTGAAGAAAAAAGTGTCTTTATGAAGGAATATTAACATACTCTTTGAATTTCCCACATTTGGATAATGTCTCAGTGATCTCCGCATCGGATAGCTTCGAAAATTCTTCTTTCGTACATAAAACAAAAGAAACCAAGAGTAGCAATTTGATGAACGCTCCAATTGAGACCATCGTTCTTCTATGAACCGATCACAGTGGAAATGTATCTTCCAACGATTTTAAACCTCTTCTTTTTACAATTTTCTCCAACTCATTGTTTAATTATAGAATGTTCCCACGGTAATCCATTTTTAATGTATTTATTTATCCTCCCGATGTTCCTCTTTGCTTCCCCCGAAACTTCTCAGACGCTCTGACCAAGTTTTTTCTTTTTCTTTTTTTCGTTTTTCGTGTTTCCTCTTCCTCTTCCTCTTCCTCTTCCCCCGCGACTCCGCCTACTGCACACAAAACATAGTGGAAGGCGGAACCCGGGAGGTGTCGGCTGCTGTCAGGATACACCTCTCCTCACTACGTTTTATTGTTAACTCTGGTTCCTCTGCATTTGACCGTGAAAATCTTTCGCCTTTTACTAAAGAT</canonical>
            <polymorphic>GAAACATCAACATTCGCACCCATCACCACTTGGACGTCTTCGTTAATCTCCATCTTGTTATCTGAATTCTCAGGAAATTCGAAAAAAGTAATCGGAAAAAAACCCACTTCGAACACAAAACCATTTATCCTGAGGATGTTTATTCTCTGGATGAGAATCTCCTAGAATCATTCCAGTTGGTTCGTTCTTACACTCTCCAATCAATTTTGCAGAAAAGTTGCCTGTTGTATTGAGGAAATTTGAGACACTGTTCCCACGACTGAAACTCAGAAGTTCAACTTTGACTCCTTGATTACATATTACTTACGTTCCACATTCCATTGAATGATAATTGGTCAGGATACGAATATCAGTCAGGAAATGACGAGGAGAGATGTAAGCAAGGAGAACATCGTCTTTGGTTTTTGAAATCCCCTCTTTCAAACTGAAGAAAAAAGTGTCTTTATGAAGGAATATTAACATACTCTTTGAATTTCCCACATTTGGATAATGTCTCAGTRATCTCCGCATCGGATAGCTTCGAAAATTCTTCTTTCGTACATAAAACAAAAGAAACCAAGAGTAGCAATTTGATGAACGCTCCAATTGAGACCATCGTTCTTCTATGAACCGATCACAGTGGAAATGTATCTTCCAACGATTTTAAACCTCTTCTTTTTACAATTTTCTCCAACTCATTGTTTAATTATAGAATGTTCCCACGGTAATCCATTTTTAATGTATTTATTTATCCTCCCGATGTTCCTCTTTGCTTCCCCCGAAACTTCTCAGACGCTCTGACCAAGTTTTTTCTTTTTCTTTTTTTCGTTTTTCGTGTTTCCTCTTCCTCTTCCTCTTCCTCTTCCCCCGCGACTCCGCCTACTGCACACAAAACATAGTGGAAGGCGGAACCCGGGAGGTGTCGGCTGCTGTCAGGATACACCTCTCCTCACTACGTTTTATTGTTAACTCTGGTTCCTCTGCATTTGACCGTGAAAATCTTTCGCCTTTTACTAAAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>499 389 112</canonical_bands>
                <polymorphic_bands>611 389</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>126 116 115 80 78 77 57 55 50 43 40 26 21 21 20 18 12 10 9 9 7 5 3 2</canonical_bands>
                <polymorphic_bands>137 126 115 80 78 77 57 55 50 43 40 26 21 20 18 12 10 9 9 7 5 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGACGAGGAGAGATGTAAG</pcr_primer_p1>
		<pcr_primer_p2>CATAGAAGAACGATGGTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATGACGAGGAGAGATGTAAGCAAGGAGAACATCGTCTTTGGTTTTTGAAATCCCCTCTTTCAAACTGAAGAAAAAAGTGTCTTTATGAAGGAATATTAACATACTCTTTGAATTTCCCACATTTGGATAATGTCTCAGTGATCTCCGCATCGGATAGCTTCGAAAATTCTTCTTTCGTACATAAAACAAAAGAAACCAAGAGTAGCAATTTGATGAACGCTCCAATTGAGACCATCGTTCTTCTATG</canonical_amplicon>
		<polymorphic_amplicon>AAATGACGAGGAGAGATGTAAGCAAGGAGAACATCGTCTTTGGTTTTTGAAATCCCCTCTTTCAAACTGAAGAAAAAAGTGTCTTTATGAAGGAATATTAACATACTCTTTGAATTTCCCACATTTGGATAATGTCTCAGTRATCTCCGCATCGGATAGCTTCGAAAATTCTTCTTTCGTACATAAAACAAAAGAAACCAAGAGTAGCAATTTGATGAACGCTCCAATTGAGACCATCGTTCTTCTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24240</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>363439</contig_pos>
        <strand>+</strand>
        <context>AAAAGAAACC[A/G]AGAGTAGCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATCGGATAGCTTCGAAAATTCTTCTTTCGTACATAAAACAAAAGAAACC</left_flank>
        <right_flank>AGAGTAGCAATTTGATGAACGCTCCAATTGAGACCATCGTTCTTCTATGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCTGAATTCTCAGGAAATTCGAAAAAAGTAATCGGAAAAAAACCCACTTCGAACACAAAACCATTTATCCTGAGGATGTTTATTCTCTGGATGAGAATCTCCTAGAATCATTCCAGTTGGTTCGTTCTTACACTCTCCAATCAATTTTGCAGAAAAGTTGCCTGTTGTATTGAGGAAATTTGAGACACTGTTCCCACGACTGAAACTCAGAAGTTCAACTTTGACTCCTTGATTACATATTACTTACGTTCCACATTCCATTGAATGATAATTGGTCAGGATACGAATATCAGTCAGGAAATGACGAGGAGAGATGTAAGCAAGGAGAACATCGTCTTTGGTTTTTGAAATCCCCTCTTTCAAACTGAAGAAAAAAGTGTCTTTATGAAGGAATATTAACATACTCTTTGAATTTCCCACATTTGGATAATGTCTCAGTGATCTCCGCATCGGATAGCTTCGAAAATTCTTCTTTCGTACATAAAACAAAAGAAACCAAGAGTAGCAATTTGATGAACGCTCCAATTGAGACCATCGTTCTTCTATGAACCGATCACAGTGGAAATGTATCTTCCAACGATTTTAAACCTCTTCTTTTTACAATTTTCTCCAACTCATTGTTTAATTATAGAATGTTCCCACGGTAATCCATTTTTAATGTATTTATTTATCCTCCCGATGTTCCTCTTTGCTTCCCCCGAAACTTCTCAGACGCTCTGACCAAGTTTTTTCTTTTTCTTTTTTTCGTTTTTCGTGTTTCCTCTTCCTCTTCCTCTTCCTCTTCCCCCGCGACTCCGCCTACTGCACACAAAACATAGTGGAAGGCGGAACCCGGGAGGTGTCGGCTGCTGTCAGGATACACCTCTCCTCACTACGTTTTATTGTTAACTCTGGTTCCTCTGCATTTGACCGTGAAAATCTTTCGCCTTTTACTAAAGATTTCCGTGCAAAGGAGCAAATACTGAGTATTACTATCAATTTTTGGAGCCTCCTCGAAA</canonical>
            <polymorphic>TATCTGAATTCTCAGGAAATTCGAAAAAAGTAATCGGAAAAAAACCCACTTCGAACACAAAACCATTTATCCTGAGGATGTTTATTCTCTGGATGAGAATCTCCTAGAATCATTCCAGTTGGTTCGTTCTTACACTCTCCAATCAATTTTGCAGAAAAGTTGCCTGTTGTATTGAGGAAATTTGAGACACTGTTCCCACGACTGAAACTCAGAAGTTCAACTTTGACTCCTTGATTACATATTACTTACGTTCCACATTCCATTGAATGATAATTGGTCAGGATACGAATATCAGTCAGGAAATGACGAGGAGAGATGTAAGCAAGGAGAACATCGTCTTTGGTTTTTGAAATCCCCTCTTTCAAACTGAAGAAAAAAGTGTCTTTATGAAGGAATATTAACATACTCTTTGAATTTCCCACATTTGGATAATGTCTCAGTGATCTCCGCATCGGATAGCTTCGAAAATTCTTCTTTCGTACATAAAACAAAAGAAACCRAGAGTAGCAATTTGATGAACGCTCCAATTGAGACCATCGTTCTTCTATGAACCGATCACAGTGGAAATGTATCTTCCAACGATTTTAAACCTCTTCTTTTTACAATTTTCTCCAACTCATTGTTTAATTATAGAATGTTCCCACGGTAATCCATTTTTAATGTATTTATTTATCCTCCCGATGTTCCTCTTTGCTTCCCCCGAAACTTCTCAGACGCTCTGACCAAGTTTTTTCTTTTTCTTTTTTTCGTTTTTCGTGTTTCCTCTTCCTCTTCCTCTTCCTCTTCCCCCGCGACTCCGCCTACTGCACACAAAACATAGTGGAAGGCGGAACCCGGGAGGTGTCGGCTGCTGTCAGGATACACCTCTCCTCACTACGTTTTATTGTTAACTCTGGTTCCTCTGCATTTGACCGTGAAAATCTTTCGCCTTTTACTAAAGATTTCCGTGCAAAGGAGCAAATACTGAGTATTACTATCAATTTTTGGAGCCTCCTCGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGTCTTTGGTTTTTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTTGGAAGATACATTTCCACTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATCGTCTTTGGTTTTTGAAATCCCCTCTTTCAAACTGAAGAAAAAAGTGTCTTTATGAAGGAATATTAACATACTCTTTGAATTTCCCACATTTGGATAATGTCTCAGTGATCTCCGCATCGGATAGCTTCGAAAATTCTTCTTTCGTACATAAAACAAAAGAAACCAAGAGTAGCAATTTGATGAACGCTCCAATTGAGACCATCGTTCTTCTATGAACCGATCACAGTGGAAATGTATCTTCCAAC</canonical_amplicon>
		<polymorphic_amplicon>ATCGTCTTTGGTTTTTGAAATCCCCTCTTTCAAACTGAAGAAAAAAGTGTCTTTATGAAGGAATATTAACATACTCTTTGAATTTCCCACATTTGGATAATGTCTCAGTGATCTCCGCATCGGATAGCTTCGAAAATTCTTCTTTCGTACATAAAACAAAAGAAACCRAGAGTAGCAATTTGATGAACGCTCCAATTGAGACCATCGTTCTTCTATGAACCGATCACAGTGGAAATGTATCTTCCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24241</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>363526</contig_pos>
        <strand>+</strand>
        <context>CAACGATTTT[A/T]AACMTYTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGTTCTTCTATGAACCGATCACAGTGGAAATGTATCTTCCAACGATTTT</left_flank>
        <right_flank>AACCTCTTCTTTTTACAATTTTCTCCAACTCATTGTTTAATTATAGAATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGGATGAGAATCTCCTAGAATCATTCCAGTTGGTTCGTTCTTACACTCTCCAATCAATTTTGCAGAAAAGTTGCCTGTTGTATTGAGGAAATTTGAGACACTGTTCCCACGACTGAAACTCAGAAGTTCAACTTTGACTCCTTGATTACATATTACTTACGTTCCACATTCCATTGAATGATAATTGGTCAGGATACGAATATCAGTCAGGAAATGACGAGGAGAGATGTAAGCAAGGAGAACATCGTCTTTGGTTTTTGAAATCCCCTCTTTCAAACTGAAGAAAAAAGTGTCTTTATGAAGGAATATTAACATACTCTTTGAATTTCCCACATTTGGATAATGTCTCAGTGATCTCCGCATCGGATAGCTTCGAAAATTCTTCTTTCGTACATAAAACAAAAGAAACCAAGAGTAGCAATTTGATGAACGCTCCAATTGAGACCATCGTTCTTCTATGAACCGATCACAGTGGAAATGTATCTTCCAACGATTTTAAACCTCTTCTTTTTACAATTTTCTCCAACTCATTGTTTAATTATAGAATGTTCCCACGGTAATCCATTTTTAATGTATTTATTTATCCTCCCGATGTTCCTCTTTGCTTCCCCCGAAACTTCTCAGACGCTCTGACCAAGTTTTTTCTTTTTCTTTTTTTCGTTTTTCGTGTTTCCTCTTCCTCTTCCTCTTCCTCTTCCCCCGCGACTCCGCCTACTGCACACAAAACATAGTGGAAGGCGGAACCCGGGAGGTGTCGGCTGCTGTCAGGATACACCTCTCCTCACTACGTTTTATTGTTAACTCTGGTTCCTCTGCATTTGACCGTGAAAATCTTTCGCCTTTTACTAAAGATTTCCGTGCAAAGGAGCAAATACTGAGTATTACTATCAATTTTTGGAGCCTCCTCGAAAGAGCGAGGCAAAATAATCTAGAAAATAGCAGTAAATAGTTTATTTTCGACGAAACAACTTAAGTGAGTCTTCTCATAAATTCCTCGC</canonical>
            <polymorphic>TCTGGATGAGAATCTCCTAGAATCATTCCAGTTGGTTCGTTCTTACACTCTCCAATCAATTTTGCAGAAAAGTTGCCTGTTGTATTGAGGAAATTTGAGACACTGTTCCCACGACTGAAACTCAGAAGTTCAACTTTGACTCCTTGATTACATATTACTTACGTTCCACATTCCATTGAATGATAATTGGTCAGGATACGAATATCAGTCAGGAAATGACGAGGAGAGATGTAAGCAAGGAGAACATCGTCTTTGGTTTTTGAAATCCCCTCTTTCAAACTGAAGAAAAAAGTGTCTTTATGAAGGAATATTAACATACTCTTTGAATTTCCCACATTTGGATAATGTCTCAGTGATCTCCGCATCGGATAGCTTCGAAAATTCTTCTTTCGTACATAAAACAAAAGAAACCAAGAGTAGCAATTTGATGAACGCTCCAATTGAGACCATCGTTCTTCTATGAACCGATCACAGTGGAAATGTATCTTCCAACGATTTTWAACCTCTTCTTTTTACAATTTTCTCCAACTCATTGTTTAATTATAGAATGTTCCCACGGTAATCCATTTTTAATGTATTTATTTATCCTCCCGATGTTCCTCTTTGCTTCCCCCGAAACTTCTCAGACGCTCTGACCAAGTTTTTTCTTTTTCTTTTTTTCGTTTTTCGTGTTTCCTCTTCCTCTTCCTCTTCCTCTTCCCCCGCGACTCCGCCTACTGCACACAAAACATAGTGGAAGGCGGAACCCGGGAGGTGTCGGCTGCTGTCAGGATACACCTCTCCTCACTACGTTTTATTGTTAACTCTGGTTCCTCTGCATTTGACCGTGAAAATCTTTCGCCTTTTACTAAAGATTTCCGTGCAAAGGAGCAAATACTGAGTATTACTATCAATTTTTGGAGCCTCCTCGAAAGAGCGAGGCAAAATAATCTAGAAAATAGCAGTAAATAGTTTATTTTCGACGAAACAACTTAAGTGAGTCTTCTCATAAATTCCTCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>311 230 187 172 39 33 28</canonical_bands>
                <polymorphic_bands>311 230 226 172 33 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATAGCTTCGAAAATTCTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>ACATCGGGAGGATAAATAAATAC</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>GATAGCTTCGAAAATTCTTCTTTCGTACATAAAACAAAAGAAACCAAGAGTAGCAATTTGATGAACGCTCCAATTGAGACCATCGTTCTTCTATGAACCGATCACAGTGGAAATGTATCTTCCAACGATTTTAAACCTCTTCTTTTTACAATTTTCTCCAACTCATTGTTTAATTATAGAATGTTCCCACGGTAATCCATTTTTAATGTATTTATTTATCCTCCCGATGT</canonical_amplicon>
		<polymorphic_amplicon>GATAGCTTCGAAAATTCTTCTTTCGTACATAAAACAAAAGAAACCAAGAGTAGCAATTTGATGAACGCTCCAATTGAGACCATCGTTCTTCTATGAACCGATCACAGTGGAAATGTATCTTCCAACGATTTTWAACCTCTTCTTTTTACAATTTTCTCCAACTCATTGTTTAATTATAGAATGTTCCCACGGTAATCCATTTTTAATGTATTTATTTATCCTCCCGATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24242</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>363530</contig_pos>
        <strand>+</strand>
        <context>GATTTTWAAC[A/C]TYTTCTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTTCTATGAACCGATCACAGTGGAAATGTATCTTCCAACGATTTTAAAC</left_flank>
        <right_flank>TCTTCTTTTTACAATTTTCTCCAACTCATTGTTTAATTATAGAATGTTCC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGAGAATCTCCTAGAATCATTCCAGTTGGTTCGTTCTTACACTCTCCAATCAATTTTGCAGAAAAGTTGCCTGTTGTATTGAGGAAATTTGAGACACTGTTCCCACGACTGAAACTCAGAAGTTCAACTTTGACTCCTTGATTACATATTACTTACGTTCCACATTCCATTGAATGATAATTGGTCAGGATACGAATATCAGTCAGGAAATGACGAGGAGAGATGTAAGCAAGGAGAACATCGTCTTTGGTTTTTGAAATCCCCTCTTTCAAACTGAAGAAAAAAGTGTCTTTATGAAGGAATATTAACATACTCTTTGAATTTCCCACATTTGGATAATGTCTCAGTGATCTCCGCATCGGATAGCTTCGAAAATTCTTCTTTCGTACATAAAACAAAAGAAACCAAGAGTAGCAATTTGATGAACGCTCCAATTGAGACCATCGTTCTTCTATGAACCGATCACAGTGGAAATGTATCTTCCAACGATTTTAAACCTCTTCTTTTTACAATTTTCTCCAACTCATTGTTTAATTATAGAATGTTCCCACGGTAATCCATTTTTAATGTATTTATTTATCCTCCCGATGTTCCTCTTTGCTTCCCCCGAAACTTCTCAGACGCTCTGACCAAGTTTTTTCTTTTTCTTTTTTTCGTTTTTCGTGTTTCCTCTTCCTCTTCCTCTTCCTCTTCCCCCGCGACTCCGCCTACTGCACACAAAACATAGTGGAAGGCGGAACCCGGGAGGTGTCGGCTGCTGTCAGGATACACCTCTCCTCACTACGTTTTATTGTTAACTCTGGTTCCTCTGCATTTGACCGTGAAAATCTTTCGCCTTTTACTAAAGATTTCCGTGCAAAGGAGCAAATACTGAGTATTACTATCAATTTTTGGAGCCTCCTCGAAAGAGCGAGGCAAAATAATCTAGAAAATAGCAGTAAATAGTTTATTTTCGACGAAACAACTTAAGTGAGTCTTCTCATAAATTCCTCGCAAAC</canonical>
            <polymorphic>GATGAGAATCTCCTAGAATCATTCCAGTTGGTTCGTTCTTACACTCTCCAATCAATTTTGCAGAAAAGTTGCCTGTTGTATTGAGGAAATTTGAGACACTGTTCCCACGACTGAAACTCAGAAGTTCAACTTTGACTCCTTGATTACATATTACTTACGTTCCACATTCCATTGAATGATAATTGGTCAGGATACGAATATCAGTCAGGAAATGACGAGGAGAGATGTAAGCAAGGAGAACATCGTCTTTGGTTTTTGAAATCCCCTCTTTCAAACTGAAGAAAAAAGTGTCTTTATGAAGGAATATTAACATACTCTTTGAATTTCCCACATTTGGATAATGTCTCAGTGATCTCCGCATCGGATAGCTTCGAAAATTCTTCTTTCGTACATAAAACAAAAGAAACCAAGAGTAGCAATTTGATGAACGCTCCAATTGAGACCATCGTTCTTCTATGAACCGATCACAGTGGAAATGTATCTTCCAACGATTTTAAACMTCTTCTTTTTACAATTTTCTCCAACTCATTGTTTAATTATAGAATGTTCCCACGGTAATCCATTTTTAATGTATTTATTTATCCTCCCGATGTTCCTCTTTGCTTCCCCCGAAACTTCTCAGACGCTCTGACCAAGTTTTTTCTTTTTCTTTTTTTCGTTTTTCGTGTTTCCTCTTCCTCTTCCTCTTCCTCTTCCCCCGCGACTCCGCCTACTGCACACAAAACATAGTGGAAGGCGGAACCCGGGAGGTGTCGGCTGCTGTCAGGATACACCTCTCCTCACTACGTTTTATTGTTAACTCTGGTTCCTCTGCATTTGACCGTGAAAATCTTTCGCCTTTTACTAAAGATTTCCGTGCAAAGGAGCAAATACTGAGTATTACTATCAATTTTTGGAGCCTCCTCGAAAGAGCGAGGCAAAATAATCTAGAAAATAGCAGTAAATAGTTTATTTTCGACGAAACAACTTAAGTGAGTCTTCTCATAAATTCCTCGCAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATAGCTTCGAAAATTCTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>ACATCGGGAGGATAAATAAATAC</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>GATAGCTTCGAAAATTCTTCTTTCGTACATAAAACAAAAGAAACCAAGAGTAGCAATTTGATGAACGCTCCAATTGAGACCATCGTTCTTCTATGAACCGATCACAGTGGAAATGTATCTTCCAACGATTTTAAACCTCTTCTTTTTACAATTTTCTCCAACTCATTGTTTAATTATAGAATGTTCCCACGGTAATCCATTTTTAATGTATTTATTTATCCTCCCGATGT</canonical_amplicon>
		<polymorphic_amplicon>GATAGCTTCGAAAATTCTTCTTTCGTACATAAAACAAAAGAAACCAAGAGTAGCAATTTGATGAACGCTCCAATTGAGACCATCGTTCTTCTATGAACCGATCACAGTGGAAATGTATCTTCCAACGATTTTAAACMTCTTCTTTTTACAATTTTCTCCAACTCATTGTTTAATTATAGAATGTTCCCACGGTAATCCATTTTTAATGTATTTATTTATCCTCCCGATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24243</snp_id>
        <super_contig>c000401052.Contig7</super_contig>
        <contig_pos>363532</contig_pos>
        <strand>+</strand>
        <context>TTTTWAACMT[C/T]TTCTTTTTAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTATGAACCGATCACAGTGGAAATGTATCTTCCAACGATTTTAAACCT</left_flank>
        <right_flank>TTCTTTTTACAATTTTCTCCAACTCATTGTTTAATTATAGAATGTTCCCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGAATCTCCTAGAATCATTCCAGTTGGTTCGTTCTTACACTCTCCAATCAATTTTGCAGAAAAGTTGCCTGTTGTATTGAGGAAATTTGAGACACTGTTCCCACGACTGAAACTCAGAAGTTCAACTTTGACTCCTTGATTACATATTACTTACGTTCCACATTCCATTGAATGATAATTGGTCAGGATACGAATATCAGTCAGGAAATGACGAGGAGAGATGTAAGCAAGGAGAACATCGTCTTTGGTTTTTGAAATCCCCTCTTTCAAACTGAAGAAAAAAGTGTCTTTATGAAGGAATATTAACATACTCTTTGAATTTCCCACATTTGGATAATGTCTCAGTGATCTCCGCATCGGATAGCTTCGAAAATTCTTCTTTCGTACATAAAACAAAAGAAACCAAGAGTAGCAATTTGATGAACGCTCCAATTGAGACCATCGTTCTTCTATGAACCGATCACAGTGGAAATGTATCTTCCAACGATTTTAAACCTCTTCTTTTTACAATTTTCTCCAACTCATTGTTTAATTATAGAATGTTCCCACGGTAATCCATTTTTAATGTATTTATTTATCCTCCCGATGTTCCTCTTTGCTTCCCCCGAAACTTCTCAGACGCTCTGACCAAGTTTTTTCTTTTTCTTTTTTTCGTTTTTCGTGTTTCCTCTTCCTCTTCCTCTTCCTCTTCCCCCGCGACTCCGCCTACTGCACACAAAACATAGTGGAAGGCGGAACCCGGGAGGTGTCGGCTGCTGTCAGGATACACCTCTCCTCACTACGTTTTATTGTTAACTCTGGTTCCTCTGCATTTGACCGTGAAAATCTTTCGCCTTTTACTAAAGATTTCCGTGCAAAGGAGCAAATACTGAGTATTACTATCAATTTTTGGAGCCTCCTCGAAAGAGCGAGGCAAAATAATCTAGAAAATAGCAGTAAATAGTTTATTTTCGACGAAACAACTTAAGTGAGTCTTCTCATAAATTCCTCGCAAACGA</canonical>
            <polymorphic>TGAGAATCTCCTAGAATCATTCCAGTTGGTTCGTTCTTACACTCTCCAATCAATTTTGCAGAAAAGTTGCCTGTTGTATTGAGGAAATTTGAGACACTGTTCCCACGACTGAAACTCAGAAGTTCAACTTTGACTCCTTGATTACATATTACTTACGTTCCACATTCCATTGAATGATAATTGGTCAGGATACGAATATCAGTCAGGAAATGACGAGGAGAGATGTAAGCAAGGAGAACATCGTCTTTGGTTTTTGAAATCCCCTCTTTCAAACTGAAGAAAAAAGTGTCTTTATGAAGGAATATTAACATACTCTTTGAATTTCCCACATTTGGATAATGTCTCAGTGATCTCCGCATCGGATAGCTTCGAAAATTCTTCTTTCGTACATAAAACAAAAGAAACCAAGAGTAGCAATTTGATGAACGCTCCAATTGAGACCATCGTTCTTCTATGAACCGATCACAGTGGAAATGTATCTTCCAACGATTTTAAACCTYTTCTTTTTACAATTTTCTCCAACTCATTGTTTAATTATAGAATGTTCCCACGGTAATCCATTTTTAATGTATTTATTTATCCTCCCGATGTTCCTCTTTGCTTCCCCCGAAACTTCTCAGACGCTCTGACCAAGTTTTTTCTTTTTCTTTTTTTCGTTTTTCGTGTTTCCTCTTCCTCTTCCTCTTCCTCTTCCCCCGCGACTCCGCCTACTGCACACAAAACATAGTGGAAGGCGGAACCCGGGAGGTGTCGGCTGCTGTCAGGATACACCTCTCCTCACTACGTTTTATTGTTAACTCTGGTTCCTCTGCATTTGACCGTGAAAATCTTTCGCCTTTTACTAAAGATTTCCGTGCAAAGGAGCAAATACTGAGTATTACTATCAATTTTTGGAGCCTCCTCGAAAGAGCGAGGCAAAATAATCTAGAAAATAGCAGTAAATAGTTTATTTTCGACGAAACAACTTAAGTGAGTCTTCTCATAAATTCCTCGCAAACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATAGCTTCGAAAATTCTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>ACATCGGGAGGATAAATAAATAC</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>GATAGCTTCGAAAATTCTTCTTTCGTACATAAAACAAAAGAAACCAAGAGTAGCAATTTGATGAACGCTCCAATTGAGACCATCGTTCTTCTATGAACCGATCACAGTGGAAATGTATCTTCCAACGATTTTAAACCTCTTCTTTTTACAATTTTCTCCAACTCATTGTTTAATTATAGAATGTTCCCACGGTAATCCATTTTTAATGTATTTATTTATCCTCCCGATGT</canonical_amplicon>
		<polymorphic_amplicon>GATAGCTTCGAAAATTCTTCTTTCGTACATAAAACAAAAGAAACCAAGAGTAGCAATTTGATGAACGCTCCAATTGAGACCATCGTTCTTCTATGAACCGATCACAGTGGAAATGTATCTTCCAACGATTTTAAACCTYTTCTTTTTACAATTTTCTCCAACTCATTGTTTAATTATAGAATGTTCCCACGGTAATCCATTTTTAATGTATTTATTTATCCTCCCGATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24244</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>14252</contig_pos>
        <strand>+</strand>
        <context>CTTTTGTTCT[C/T]GTATCCTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATACCTTATCCCGGTGTCCACCAATCGTCACCATTGGAACTTTTGTTCT</left_flank>
        <right_flank>GTATCCTTCTTCCTCTTCTTCTTAGCACTACTCTCTTCTTCTTCTTTCTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTACCGCACATCCCACATTTTGGCAGTCTTATCAGTCGATACACTGACAAACTGATTCTCATCCACCGGATTCCATTTCACAGACTCTACCCATCCGTTCTGGTGGCCGATGAATGATTGTTTTACCATTGCACCGTCTGAAAATGAGGTCTTCATATAGTGTTATCACTAAAAACAAAAAAAACGAACCTCGATTTTTTGGGTCGTAGAGTCGTGGAATGGCGTCAGTGCAACTGGAGATCAGAAGGTTACTTGTTGGATGAATGTCGATACTGGTGAATGATTTCGGGCCTTTGATACGAGACACTTCTCCAGCTGAATCGTTTTCTGTTTCATCGGACAGAACTCTCCATTATCTTACCTAATTCCAAATCCCACTGAACAACTGTATGATCCCAAGAACATGAGAACGCGTGGCCAGACTTCCACGGACACCACACAACCGACGATACCTTATCCCGGTGTCCACCAATCGTCACCATTGGAACTTTTGTTCTTGTATCCTTCTTCCTCTTCTTCTTAGCACTACTCTCTTCTTCTTCTTTCTCGTAAATGGTCGCCTCGTCAGATGGATCCAAATTCCAAACTTTTAGATTCGTGTCCACTGAACCTGATATAGCGCGTGTTGCATCAGAATTCACAGAGACACACTCAACGGCTCTCTCGTGTCCACGGAATACGATCTTTTCGACAAGTGCTCCTTTTTCAATTTCGTAAAGTGTCAACAGTTGATTCTCGCCACCAACTATAAATTCAGTGCCTTCCAATTGCACCTTTTCTTAAATATTTAAAATTTGAAACTCGTTATTTTGATTCAGACCGTACTTGTAGTTCTAACAATTCCACTGCACTTGAGAATGCGATTTGCTGAGTTCACAGATAACTTGGTTTCTTTTCCTTTTCTGTCGACAATCACAATATCTCCTCCGTAGGTTGTGGAGAAAATGCTGAACAAATTTGTTGATTTGGTACTGTTTTAGTATGAAACACTAACTGTC</canonical>
            <polymorphic>ACTTACCGCACATCCCACATTTTGGCAGTCTTATCAGTCGATACACTGACAAACTGATTCTCATCCACCGGATTCCATTTCACAGACTCTACCCATCCGTTCTGGTGGCCGATGAATGATTGTTTTACCATTGCACCGTCTGAAAATGAGGTCTTCATATAGTGTTATCACTAAAAACAAAAAAAACGAACCTCGATTTTTTGGGTCGTAGAGTCGTGGAATGGCGTCAGTGCAACTGGAGATCAGAAGGTTACTTGTTGGATGAATGTCGATACTGGTGAATGATTTCGGGCCTTTGATACGAGACACTTCTCCAGCTGAATCGTTTTCTGTTTCATCGGACAGAACTCTCCATTATCTTACCTAATTCCAAATCCCACTGAACAACTGTATGATCCCAAGAACATGAGAACGCGTGGCCAGACTTCCACGGACACCACACAACCGACGATACCTTATCCCGGTGTCCACCAATCGTCACCATTGGAACTTTTGTTCTYGTATCCTTCTTCCTCTTCTTCTTAGCACTACTCTCTTCTTCTTCTTTCTCGTAAATGGTCGCCTCGTCAGATGGATCCAAATTCCAAACTTTTAGATTCGTGTCCACTGAACCTGATATAGCGCGTGTTGCATCAGAATTCACAGAGACACACTCAACGGCTCTCTCGTGTCCACGGAATACGATCTTTTCGACAAGTGCTCCTTTTTCAATTTCGTAAAGTGTCAACAGTTGATTCTCGCCACCAACTATAAATTCAGTGCCTTCCAATTGCACCTTTTCTTAAATATTTAAAATTTGAAACTCGTTATTTTGATTCAGACCGTACTTGTAGTTCTAACAATTCCACTGCACTTGAGAATGCGATTTGCTGAGTTCACAGATAACTTGGTTTCTTTTCCTTTTCTGTCGACAATCACAATATCTCCTCCGTAGGTTGTGGAGAAAATGCTGAACAAATTTGTTGATTTGGTACTGTTTTAGTATGAAACACTAACTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGACACTTCTCCAGCTGAATC</pcr_primer_p1>
		<pcr_primer_p2>TTACGAGAAAGAAGAAGAAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGACACTTCTCCAGCTGAATCGTTTTCTGTTTCATCGGACAGAACTCTCCATTATCTTACCTAATTCCAAATCCCACTGAACAACTGTATGATCCCAAGAACATGAGAACGCGTGGCCAGACTTCCACGGACACCACACAACCGACGATACCTTATCCCGGTGTCCACCAATCGTCACCATTGGAACTTTTGTTCTTGTATCCTTCTTCCTCTTCTTCTTAGCACTACTCTCTTCTTCTTCTTTCTCGTAA</canonical_amplicon>
		<polymorphic_amplicon>AGACACTTCTCCAGCTGAATCGTTTTCTGTTTCATCGGACAGAACTCTCCATTATCTTACCTAATTCCAAATCCCACTGAACAACTGTATGATCCCAAGAACATGAGAACGCGTGGCCAGACTTCCACGGACACCACACAACCGACGATACCTTATCCCGGTGTCCACCAATCGTCACCATTGGAACTTTTGTTCTYGTATCCTTCTTCCTCTTCTTCTTAGCACTACTCTCTTCTTCTTCTTTCTCGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24245</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>51151</contig_pos>
        <strand>+</strand>
        <context>TAACGAATCG[G/T]AAAAAAAGAK</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGAGACAAAACGAGAAACACTAATATTCAAAACTACAATTAACGAATCG</left_flank>
        <right_flank>AAAAAAAGATAAAAATTAGCTTTTCGTTGACTCCATCAAGTCTTTAGCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCATGCATTAATATTTTGTGTTAAAAAAATACAAGAAAATATATTTTTTATGTCATGAATAACCCCATTAAAAACAAGGCAGAGAAGTCGGTTTAAAAAATGTTTTTTTTTACGAAACGCAAGGTCTAAATACTATTGCTTATCAGTTGGTTGAACGAGAAGACGGCAGAAACTTCTAGAAATCAATAGTAACAGTGATAAGATAGGTGATAGTGCAAACTTCGGACTCCAAATTATTAATTGCAAAATTAGAGTTCGAAAACCAGAAGATGGCAAATTTGGCCTTGACTCGGTAATACTATTTATGGCAGAAGGAAGAAAAACGGATAAATGGCTAGAAAGGAATCCCATGGGATATATCGAAAAAAAAAGCAACAAAAAACAATGAGTCACCGGAATCGTTATCGGAGTTGAGAACAAAAATTTAAGAGAAAAAAGATGTTTTTATTCGAGACAAAACGAGAAACACTAATATTCAAAACTACAATTAACGAATCGAAAAAAAAGATAAAAATTAGCTTTTCGTTGACTCCATCAAGTCTTTAGCTTCGTTGATTTTAGCGGCCAAATATGGAGATCCTCCTGAAAGAAAGAAGAAGTAATGTCTCTCAATCATTTGAGCTCATTAGAGCGTGGCACTGCATTTTTAATGGGAAGAAAATAGAAAAAAAATGGAAAAGAGTGGAAAGCAGGATTAGGAAAGAGGGCAGATCTCTGTTTTCTTTTCTTATTGGTTTATTTCGAAAAAAGTCTAGATCACCTCTATCTGGATGATTCACAATCATCACTTTTTTGTGTGCATCTTTAATTTTCGCTGGCTTGGCTGACGGCGTAATTCCGAGGATTTTAGCTGCTTCACTTCTCGACATCTTCTGATCGAATCCTCCTCGATAATAACTGTTCAGCTGAAAACATTGCGAACGTTGTTTCAAAAATGATAGATAAAGGATATACTCCTCCGGCAACTGGCAATGCTTCCATTCCCTTTTTAATCAATGC</canonical>
            <polymorphic>TGCATGCATTAATATTTTGTGTTAAAAAAATACAAGAAAATATATTTTTTATGTCATGAATAACCCCATTAAAAACAAGGCAGAGAAGTCGGTTTAAAAAATGTTTTTTTTTACGAAACGCAAGGTCTAAATACTATTGCTTATCAGTTGGTTGAACGAGAAGACGGCAGAAACTTCTAGAAATCAATAGTAACAGTGATAAGATAGGTGATAGTGCAAACTTCGGACTCCAAATTATTAATTGCAAAATTAGAGTTCGAAAACCAGAAGATGGCAAATTTGGCCTTGACTCGGTAATACTATTTATGGCAGAAGGAAGAAAAACGGATAAATGGCTAGAAAGGAATCCCATGGGATATATCGAAAAAAAAAGCAACAAAAAACAATGAGTCACCGGAATCGTTATCGGAGTTGAGAACAAAAATTTAAGAGAAAAAAGATGTTTTTATTCGAGACAAAACGAGAAACACTAATATTCAAAACTACAATTAACGAATCGKAAAAAAAGATAAAAATTAGCTTTTCGTTGACTCCATCAAGTCTTTAGCTTCGTTGATTTTAGCGGCCAAATATGGAGATCCTCCTGAAAGAAAGAAGAAGTAATGTCTCTCAATCATTTGAGCTCATTAGAGCGTGGCACTGCATTTTTAATGGGAAGAAAATAGAAAAAAAATGGAAAAGAGTGGAAAGCAGGATTAGGAAAGAGGGCAGATCTCTGTTTTCTTTTCTTATTGGTTTATTTCGAAAAAAGTCTAGATCACCTCTATCTGGATGATTCACAATCATCACTTTTTTGTGTGCATCTTTAATTTTCGCTGGCTTGGCTGACGGCGTAATTCCGAGGATTTTAGCTGCTTCACTTCTCGACATCTTCTGATCGAATCCTCCTCGATAATAACTGTTCAGCTGAAAACATTGCGAACGTTGTTTCAAAAATGATAGATAAAGGATATACTCCTCCGGCAACTGGCAATGCTTCCATTCCCTTTTTAATCAATGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>258 245 122 110 104 89 47 14 11</canonical_bands>
                <polymorphic_bands>292 258 122 110 104 89 14 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGGAAGAAAAACGGATAAAT</pcr_primer_p1>
		<pcr_primer_p2>TAAAATCAACGAAGCTAAAGACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGGAAGAAAAACGGATAAATGGCTAGAAAGGAATCCCATGGGATATATCGAAAAAAAAAGCAACAAAAAACAATGAGTCACCGGAATCGTTATCGGAGTTGAGAACAAAAATTTAAGAGAAAAAAGATGTTTTTATTCGAGACAAAACGAGAAACACTAATATTCAAAACTACAATTAACGAATCGAAAAAAAAGATAAAAATTAGCTTTTCGTTGACTCCATCAAGTCTTTAGCTTCGTTGATTTTA</canonical_amplicon>
		<polymorphic_amplicon>GAAGGAAGAAAAACGGATAAATGGCTAGAAAGGAATCCCATGGGATATATCGAAAAAAAAAGCAACAAAAAACAATGAGTCACCGGAATCGTTATCGGAGTTGAGAACAAAAATTTAAGAGAAAAAAGATGTTTTTATTCGAGACAAAACGAGAAACACTAATATTCAAAACTACAATTAACGAATCGKAAAAAAAGATAAAAATTAGCTTTTCGTTGACTCCATCAAGTCTTTAGCTTCGTTGATTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24246</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>126030</contig_pos>
        <strand>+</strand>
        <context>TGCGCCACGA[C/T]TGATGACCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGCCGTCTTATCCACTGCCGTGATTGCCAGATCCTCGTCTGCGCCACGA</left_flank>
        <right_flank>TGATGACCTATGAATCTGATGATTTCTCTGTTGGAGGTGAGCAAATGCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCACTTGAAATCTCACTAGATGCCACTAATCGAGTAGTTTTTTGATTTGTTGATTTCTCTTTTCTAATCAAATCCTATATAATTTCGTTTTCCATTTTTTTAGCTCGTCGCTACTTTCCGTATAGATTCAAACATCACACGGCTCAATTGCTAACAGGTTTGAGTTTTTTTTTTACTTTTTGAGATTACTGATACTGAAACCTGTCGCATGGTTTTCAACTCTAGACCCTAGAGGCTGAGCAAAATACGGTAGAGCATACTTTCAGATTTGGGGATGAACGGTGGCGGAGTCCATATGCAGAATCGCCTTATCAGTACTGATGTTCTCACTGGAAAGTTTGGAGATCATGACAATAAGAAGAACCCGAGAAAAGGTGATTTGCGATAGAGCGCATCCGCAACCCTTCTATTATAAATTCGTTTCAAGATTTAGATTTCGGTGCTGGAACGGCCGTCTTATCCACTGCCGTGATTGCCAGATCCTCGTCTGCGCCACGACTGATGACCTATGAATCTGATGATTTCTCTGTTGGAGGTGAGCAAATGCAACAGAGCTTGTCTCCTAATTTCCCAACAACTTCCAGAAATCAAACGCTTCTGGCCACCGCTTCGCTCACTGGAGACCCTTCACGACTCCATTAACCTATCCCAATTCGATGGATTTCTTGAGAGGCTGATCAAAGGAGCACTGACACCTCTTCCATCTCCACCAAAGACTCCCCTTCCAACCGCCTTGTCTTGTGATGCTATCAACAAGACGCCGACGCAGGATGAGGTGGAGCAGGTCATCGGAAAGCTAGCACCTACGTCTAGTACAGATTAAGATTTATGTCAATTGTGTATTTTCATTTTCATTTCGTGTCACAAAATGGTTGTTTGATTTGATTTTTTTTGGTCTATGTTTCAGTATTTATTGAATTATGAATAGCTTGAATTGCTGGGGGTTAAAATATAACAGAGATTGATTCATCGAGATCCTTGCCTAGAAATACAGTGGGA</canonical>
            <polymorphic>CGCACTTGAAATCTCACTAGATGCCACTAATCGAGTAGTTTTTTGATTTGTTGATTTCTCTTTTCTAATCAAATCCTATATAATTTCGTTTTCCATTTTTTTAGCTCGTCGCTACTTTCCGTATAGATTCAAACATCACACGGCTCAATTGCTAACAGGTTTGAGTTTTTTTTTTACTTTTTGAGATTACTGATACTGAAACCTGTCGCATGGTTTTCAACTCTAGACCCTAGAGGCTGAGCAAAATACGGTAGAGCATACTTTCAGATTTGGGGATGAACGGTGGCGGAGTCCATATGCAGAATCGCCTTATCAGTACTGATGTTCTCACTGGAAAGTTTGGAGATCATGACAATAAGAAGAACCCGAGAAAAGGTGATTTGCGATAGAGCGCATCCGCAACCCTTCTATTATAAATTCGTTTCAAGATTTAGATTTCGGTGCTGGAACGGCCGTCTTATCCACTGCCGTGATTGCCAGATCCTCGTCTGCGCCACGAYTGATGACCTATGAATCTGATGATTTCTCTGTTGGAGGTGAGCAAATGCAACAGAGCTTGTCTCCTAATTTCCCAACAACTTCCAGAAATCAAACGCTTCTGGCCACCGCTTCGCTCACTGGAGACCCTTCACGACTCCATTAACCTATCCCAATTCGATGGATTTCTTGAGAGGCTGATCAAAGGAGCACTGACACCTCTTCCATCTCCACCAAAGACTCCCCTTCCAACCGCCTTGTCTTGTGATGCTATCAACAAGACGCCGACGCAGGATGAGGTGGAGCAGGTCATCGGAAAGCTAGCACCTACGTCTAGTACAGATTAAGATTTATGTCAATTGTGTATTTTCATTTTCATTTCGTGTCACAAAATGGTTGTTTGATTTGATTTTTTTTGGTCTATGTTTCAGTATTTATTGAATTATGAATAGCTTGAATTGCTGGGGGTTAAAATATAACAGAGATTGATTCATCGAGATCCTTGCCTAGAAATACAGTGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTGATGTTCTCACTGGAAAGT</pcr_primer_p1>
		<pcr_primer_p2>AATTAGGAGACAAGCTCTGTTG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TACTGATGTTCTCACTGGAAAGTTTGGAGATCATGACAATAAGAAGAACCCGAGAAAAGGTGATTTGCGATAGAGCGCATCCGCAACCCTTCTATTATAAATTCGTTTCAAGATTTAGATTTCGGTGCTGGAACGGCCGTCTTATCCACTGCCGTGATTGCCAGATCCTCGTCTGCGCCACGACTGATGACCTATGAATCTGATGATTTCTCTGTTGGAGGTGAGCAAATGCAACAGAGCTTGTCTCCTAATT</canonical_amplicon>
		<polymorphic_amplicon>TACTGATGTTCTCACTGGAAAGTTTGGAGATCATGACAATAAGAAGAACCCGAGAAAAGGTGATTTGCGATAGAGCGCATCCGCAACCCTTCTATTATAAATTCGTTTCAAGATTTAGATTTCGGTGCTGGAACGGCCGTCTTATCCACTGCCGTGATTGCCAGATCCTCGTCTGCGCCACGAYTGATGACCTATGAATCTGATGATTTCTCTGTTGGAGGTGAGCAAATGCAACAGAGCTTGTCTCCTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24247</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>126372</contig_pos>
        <strand>+</strand>
        <context>GTCAATTGTG[C/T]ATTTTCATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAAAGCTAGCACCTACGTCTAGTACAGATTAAGATTTATGTCAATTGTG</left_flank>
        <right_flank>ATTTTCATTTTCATTTCGTGTCACAAAATGGTTGTTTGATTTGATTTTTT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGATCATGACAATAAGAAGAACCCGAGAAAAGGTGATTTGCGATAGAGCGCATCCGCAACCCTTCTATTATAAATTCGTTTCAAGATTTAGATTTCGGTGCTGGAACGGCCGTCTTATCCACTGCCGTGATTGCCAGATCCTCGTCTGCGCCACGACTGATGACCTATGAATCTGATGATTTCTCTGTTGGAGGTGAGCAAATGCAACAGAGCTTGTCTCCTAATTTCCCAACAACTTCCAGAAATCAAACGCTTCTGGCCACCGCTTCGCTCACTGGAGACCCTTCACGACTCCATTAACCTATCCCAATTCGATGGATTTCTTGAGAGGCTGATCAAAGGAGCACTGACACCTCTTCCATCTCCACCAAAGACTCCCCTTCCAACCGCCTTGTCTTGTGATGCTATCAACAAGACGCCGACGCAGGATGAGGTGGAGCAGGTCATCGGAAAGCTAGCACCTACGTCTAGTACAGATTAAGATTTATGTCAATTGTGTATTTTCATTTTCATTTCGTGTCACAAAATGGTTGTTTGATTTGATTTTTTTTGGTCTATGTTTCAGTATTTATTGAATTATGAATAGCTTGAATTGCTGGGGGTTAAAATATAACAGAGATTGATTCATCGAGATCCTTGCCTAGAAATACAGTGGGAAGGAATGGCACAAGAAAATAAACCGGTTTTTTTCATGAAAAGAATCAAATTATGGTCGTTGATACCCACTAACAAATGGAACTCCAATCCACACTTCTCTTTGGTATTCCACGTAGGCATCACCGAAGAATGCAATCAGATCTCGTTCTTCGTCGTAGATTCTAGAAGCGAAGAAGTGCCACGTCACGTAGGCGTAGACGACGAAACAAATGGGATTGCAGAGGATGATTTGGGTGGAGACTGCCCAGACGAACCAGCCTAAATTATCAGAATTGGAGATAATAGAGATTAAATTTTGGTACCAAAGTATCCAGGATGTCTCATATATGCATAAATTCCATC</canonical>
            <polymorphic>GAGATCATGACAATAAGAAGAACCCGAGAAAAGGTGATTTGCGATAGAGCGCATCCGCAACCCTTCTATTATAAATTCGTTTCAAGATTTAGATTTCGGTGCTGGAACGGCCGTCTTATCCACTGCCGTGATTGCCAGATCCTCGTCTGCGCCACGACTGATGACCTATGAATCTGATGATTTCTCTGTTGGAGGTGAGCAAATGCAACAGAGCTTGTCTCCTAATTTCCCAACAACTTCCAGAAATCAAACGCTTCTGGCCACCGCTTCGCTCACTGGAGACCCTTCACGACTCCATTAACCTATCCCAATTCGATGGATTTCTTGAGAGGCTGATCAAAGGAGCACTGACACCTCTTCCATCTCCACCAAAGACTCCCCTTCCAACCGCCTTGTCTTGTGATGCTATCAACAAGACGCCGACGCAGGATGAGGTGGAGCAGGTCATCGGAAAGCTAGCACCTACGTCTAGTACAGATTAAGATTTATGTCAATTGTGYATTTTCATTTTCATTTCGTGTCACAAAATGGTTGTTTGATTTGATTTTTTTTGGTCTATGTTTCAGTATTTATTGAATTATGAATAGCTTGAATTGCTGGGGGTTAAAATATAACAGAGATTGATTCATCGAGATCCTTGCCTAGAAATACAGTGGGAAGGAATGGCACAAGAAAATAAACCGGTTTTTTTCATGAAAAGAATCAAATTATGGTCGTTGATACCCACTAACAAATGGAACTCCAATCCACACTTCTCTTTGGTATTCCACGTAGGCATCACCGAAGAATGCAATCAGATCTCGTTCTTCGTCGTAGATTCTAGAAGCGAAGAAGTGCCACGTCACGTAGGCGTAGACGACGAAACAAATGGGATTGCAGAGGATGATTTGGGTGGAGACTGCCCAGACGAACCAGCCTAAATTATCAGAATTGGAGATAATAGAGATTAAATTTTGGTACCAAAGTATCCAGGATGTCTCATATATGCATAAATTCCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCTTGTCTTGTGATGCTAT</pcr_primer_p1>
		<pcr_primer_p2>CTCGATGAATCAATCTCTGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GCCTTGTCTTGTGATGCTATCAACAAGACGCCGACGCAGGATGAGGTGGAGCAGGTCATCGGAAAGCTAGCACCTACGTCTAGTACAGATTAAGATTTATGTCAATTGTGTATTTTCATTTTCATTTCGTGTCACAAAATGGTTGTTTGATTTGATTTTTTTTGGTCTATGTTTCAGTATTTATTGAATTATGAATAGCTTGAATTGCTGGGGGTTAAAATATAACAGAGATTGATTCATCGAG</canonical_amplicon>
		<polymorphic_amplicon>GCCTTGTCTTGTGATGCTATCAACAAGACGCCGACGCAGGATGAGGTGGAGCAGGTCATCGGAAAGCTAGCACCTACGTCTAGTACAGATTAAGATTTATGTCAATTGTGYATTTTCATTTTCATTTCGTGTCACAAAATGGTTGTTTGATTTGATTTTTTTTGGTCTATGTTTCAGTATTTATTGAATTATGAATAGCTTGAATTGCTGGGGGTTAAAATATAACAGAGATTGATTCATCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24248</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>158997</contig_pos>
        <strand></strand>
        <context>ttgtagttga[C/T]gatttttttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATGTCCAGAGTAGATCAAACTTAAATAGCACTTCATTTTTGTAGTTGA</left_flank>
        <right_flank>GATTTTTTTTGAATTTTGTCTGAAGGAGATAAGCCATGTGGAAGAGCAGG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCACCTTGATTAGATTTTGAGATTTTATATATGAGGAATTTCAATATGAGATTTTGTTTTCTAGAGTGTTCTCGTCTTGACTCGTTTAACTTTAAGCCAATTTATCCAGGTTCCTGTGAAAGATATAATAAAGTTGTCAACTGATAAATTGTTTATCATAATATAACATGCATTTTATCAGTTGACACATGTTTGATATCTTCCACAGGAACCGAGATATACAAGCGTACAATCCCATCTATTATTTACCGCTTTTTTTCTTGTTACCGTCTTCGCTCTCATCTTTTTTTTTCAAAATTTCAAGTTTTTCAGCCATTCAATCAACTACACAAAAGCAAAATTGGATAGGATACAAATAATTGGAGAGGTAAGGTTTATAAATATTTCGAAATTACCAAATTTAACTTTGGGACCACCACTCATCCATTAGAAAATGTCCGATTGTTTTGAAATGTCCAGAGTAGATCAAACTTAAATAGCACTTCATTTTTGTAGTTGACGATTTTTTTTGAATTTTGTCTGAAGGAGATAAGCCATGTGGAAGAGCAGGATGTTGGCTGTTTCTTGCTAGATGGCCTATCTCCTTAGATCTAAAAAAGACCTAATCTGAAAAATTTAGAGCAATCCATCATTTCTTAAGTACGTTTTGAAGTGCTCCAAAAACAGAGTTTCAGTTTTGTAGATTCCGAATTTTTAAAAAGATATCTTCAATGAGGTTCCATTTGTTTTTCCAGAACAATTTCTAGAATCCCTGAAAACTCAAAATAGCTGAGACATCTAGGCTTCTTCTGAATCTTCTAGGAGTTTTATAAGTGCTCATCTTGTTCTCCCGAAACTCCAGCATTATTATTATATTGTCTCTTTCTTTCTTCCTTTTTTTCTTTTTTTCATCATCAAAAGACAAAGAGAGAATAGGACACAAAAAAGAGTAGAAGTGAAGAATAAACCAAGCGTGTTGTAGCAAAAAAAAGTGGTGTGGAGACTTATTTTGTGAGTTTCC</canonical>
            <polymorphic>CCACCTTGATTAGATTTTGAGATTTTATATATGAGGAATTTCAATATGAGATTTTGTTTTCTAGAGTGTTCTCGTCTTGACTCGTTTAACTTTAAGCCAATTTATCCAGGTTCCTGTGAAAGATATAATAAAGTTGTCAACTGATAAATTGTTTATCATAATATAACATGCATTTTATCAGTTGACACATGTTTGATATCTTCCACAGGAACCGAGATATACAAGCGTACAATCCCATCTATTATTTACCGCTTTTTTTCTTGTTACCGTCTTCGCTCTCATCTTTTTTTTTCAAAATTTCAAGTTTTTCAGCCATTCAATCAACTACACAAAAGCAAAATTGGATAGGATACAAATAATTGGAGAGGTAAGGTTTATAAATATTTCGAAATTACCAAATTTAACTTTGGGACCACCACTCATCCATTAGAAAATGTCCGATTGTTTTGAAATGTCCAGAGTAGATCAAACTTAAATAGCACTTCATTTTTGTAGTTGAYGATTTTTTTTGAATTTTGTCTGAAGGAGATAAGCCATGTGGAAGAGCAGGATGTTGGCTGTTTCTTGCTAGATGGCCTATCTCCTTAGATCTAAAAAAGACCTAATCTGAAAAATTTAGAGCAATCCATCATTTCTTAAGTACGTTTTGAAGTGCTCCAAAAACAGAGTTTCAGTTTTGTAGATTCCGAATTTTTAAAAAGATATCTTCAATGAGGTTCCATTTGTTTTTCCAGAACAATTTCTAGAATCCCTGAAAACTCAAAATAGCTGAGACATCTAGGCTTCTTCTGAATCTTCTAGGAGTTTTATAAGTGCTCATCTTGTTCTCCCGAAACTCCAGCATTATTATTATATTGTCTCTTTCTTTCTTCCTTTTTTTCTTTTTTTCATCATCAAAAGACAAAGAGAGAATAGGACACAAAAAAGAGTAGAAGTGAAGAATAAACCAAGCGTGTTGTAGCAAAAAAAAGTGGTGTGGAGACTTATTTTGTGAGTTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>503 314 138 45</canonical_bands>
                <polymorphic_bands>817 138 45</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>503 314 138 45</canonical_bands>
                <polymorphic_bands>817 138 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGCAAAATTGGATAGGATAC</pcr_primer_p1>
		<pcr_primer_p2>ATAGGCCATCTAGCAAGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAGCAAAATTGGATAGGATACAAATAATTGGAGAGGTAAGGTTTATAAATATTTCGAAATTACCAAATTTAACTTTGGGACCACCACTCATCCATTAGAAAATGTCCGATTGTTTTGAAATGTCCAGAGTAGATCAAACTTAAATAGCACTTCATTTTTGTAGTTGACGATTTTTTTTGAATTTTGTCTGAAGGAGATAAGCCATGTGGAAGAGCAGGATGTTGGCTGTTTCTTGCTAGATGGCCTAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGCAAAATTGGATAGGATACAAATAATTGGAGAGGTAAGGTTTATAAATATTTCGAAATTACCAAATTTAACTTTGGGACCACCACTCATCCATTAGAAAATGTCCGATTGTTTTGAAATGTCCAGAGTAGATCAAACTTAAATAGCACTTCATTTTTGTAGTTGAYGATTTTTTTTGAATTTTGTCTGAAGGAGATAAGCCATGTGGAAGAGCAGGATGTTGGCTGTTTCTTGCTAGATGGCCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24249</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>175125</contig_pos>
        <strand>+</strand>
        <context>TGGAATTTGA[A/C]TKGKTATACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACGTTATTTTTCTAGTATACTACTTTTTTTTTTGAAAAACTGGAATTTGA</left_flank>
        <right_flank>TAGATATACCAACAAAGAAGTTTGGTAACATAGCCCTATACGTACTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTTACAGCTGTTGAAGAATGTAAGTTTTCCCATTTCTATCCTATCCAATTCGGGACGCCTTTTTTACTAACCGTAAACAAAATCCTTATTTCTCGTATTTTCACACCTACTTGTTTTTTCCGAGTGTATGTGACTGATACAGTATACCGGTGAGAAAGAAAAAAAGACAAATTTTTGACTGTTTTGGAGAAAATTCCTACACTTGGTGACTTGAAAAAGTGGTTAGAAATTTCAGAATATATCCTTCAAAATAAGAGCTTCATTTTTGTAGTTTATGACTTTCCTGAAAAATAAGGTCCTGCGAAATTATCCCACGCGGCTGCCTGCGGACCGCCGCCCGTGTTGCCAGAGTTCGCGAACGGAGAAACTCTTCAACGTCGAATATCTCTTTTGGACGGACATTTACAAAAAAAGTTGTTAACTGCAAAAATGGAGCTCCTTTTTTGAACGTTATTTTTCTAGTATACTACTTTTTTTTTTGAAAAACTGGAATTTGAATAGATATACCAACAAAGAAGTTTGGTAACATAGCCCTATACGTACTTTTTGAGCACAATTATCTCGCTTTCTATAAGAGGTATCAAAATTTTGTCAACGAATGAAATGTTTGTCATATTATGATGAACAATTTTGTAGTTGACCAAGTTTTGATATCTTTTACAGAAAACTAGACAATTAGGCTCAAAGTTGACAGTTTGGGCGGGCTTCTATTAGAGCAAATAGGGTACCTATTACAGTAGCAATACGGTTATAAAAATCGTCCACTATGAAAAGCTCGAAAACTCCCTATGTCCCAATCTCACGTTCGCTGGGGCGCGATTTCTGACCAGGCCTTTTGGAATGCTGTAAGCCAGACAGTTTCCCACTTTTTGACCTCCTAAATTTTAAAGATTTTTCACTAAAACAGTCAAAACATTTTCCCCGGGTTACTGTACACAACATATCAGCTGTTTTTTCTATATCTGTGTAGTTTTTGTTTGTGCTTCATGTTCAGTACA</canonical>
            <polymorphic>TACTTACAGCTGTTGAAGAATGTAAGTTTTCCCATTTCTATCCTATCCAATTCGGGACGCCTTTTTTACTAACCGTAAACAAAATCCTTATTTCTCGTATTTTCACACCTACTTGTTTTTTCCGAGTGTATGTGACTGATACAGTATACCGGTGAGAAAGAAAAAAAGACAAATTTTTGACTGTTTTGGAGAAAATTCCTACACTTGGTGACTTGAAAAAGTGGTTAGAAATTTCAGAATATATCCTTCAAAATAAGAGCTTCATTTTTGTAGTTTATGACTTTCCTGAAAAATAAGGTCCTGCGAAATTATCCCACGCGGCTGCCTGCGGACCGCCGCCCGTGTTGCCAGAGTTCGCGAACGGAGAAACTCTTCAACGTCGAATATCTCTTTTGGACGGACATTTACAAAAAAAGTTGTTAACTGCAAAAATGGAGCTCCTTTTTTGAACGTTATTTTTCTAGTATACTACTTTTTTTTTTGAAAAACTGGAATTTGAMTAGATATACCAACAAAGAAGTTTGGTAACATAGCCCTATACGTACTTTTTGAGCACAATTATCTCGCTTTCTATAAGAGGTATCAAAATTTTGTCAACGAATGAAATGTTTGTCATATTATGATGAACAATTTTGTAGTTGACCAAGTTTTGATATCTTTTACAGAAAACTAGACAATTAGGCTCAAAGTTGACAGTTTGGGCGGGCTTCTATTAGAGCAAATAGGGTACCTATTACAGTAGCAATACGGTTATAAAAATCGTCCACTATGAAAAGCTCGAAAACTCCCTATGTCCCAATCTCACGTTCGCTGGGGCGCGATTTCTGACCAGGCCTTTTGGAATGCTGTAAGCCAGACAGTTTCCCACTTTTTGACCTCCTAAATTTTAAAGATTTTTCACTAAAACAGTCAAAACATTTTCCCCGGGTTACTGTACACAACATATCAGCTGTTTTTTCTATATCTGTGTAGTTTTTGTTTGTGCTTCATGTTCAGTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGACTTGAAAAAGTGGTTAG</pcr_primer_p1>
		<pcr_primer_p2>CGATTTTTATAACCGTATTGCTA</pcr_primer_p2>
		<pcr_amplicon_size>556</pcr_amplicon_size>
		<canonical_amplicon>GGTGACTTGAAAAAGTGGTTAGAAATTTCAGAATATATCCTTCAAAATAAGAGCTTCATTTTTGTAGTTTATGACTTTCCTGAAAAATAAGGTCCTGCGAAATTATCCCACGCGGCTGCCTGCGGACCGCCGCCCGTGTTGCCAGAGTTCGCGAACGGAGAAACTCTTCAACGTCGAATATCTCTTTTGGACGGACATTTACAAAAAAAGTTGTTAACTGCAAAAATGGAGCTCCTTTTTTGAACGTTATTTTTCTAGTATACTACTTTTTTTTTTGAAAAACTGGAATTTGAATAGATATACCAACAAAGAAGTTTGGTAACATAGCCCTATACGTACTTTTTGAGCACAATTATCTCGCTTTCTATAAGAGGTATCAAAATTTTGTCAACGAATGAAATGTTTGTCATATTATGATGAACAATTTTGTAGTTGACCAAGTTTTGATATCTTTTACAGAAAACTAGACAATTAGGCTCAAAGTTGACAGTTTGGGCGGGCTTCTATTAGAGCAAATAGGGTACCTATTACAGTAGCAATACGGTTATAAAAATCG</canonical_amplicon>
		<polymorphic_amplicon>GGTGACTTGAAAAAGTGGTTAGAAATTTCAGAATATATCCTTCAAAATAAGAGCTTCATTTTTGTAGTTTATGACTTTCCTGAAAAATAAGGTCCTGCGAAATTATCCCACGCGGCTGCCTGCGGACCGCCGCCCGTGTTGCCAGAGTTCGCGAACGGAGAAACTCTTCAACGTCGAATATCTCTTTTGGACGGACATTTACAAAAAAAGTTGTTAACTGCAAAAATGGAGCTCCTTTTTTGAACGTTATTTTTCTAGTATACTACTTTTTTTTTTGAAAAACTGGAATTTGAMTAGATATACCAACAAAGAAGTTTGGTAACATAGCCCTATACGTACTTTTTGAGCACAATTATCTCGCTTTCTATAAGAGGTATCAAAATTTTGTCAACGAATGAAATGTTTGTCATATTATGATGAACAATTTTGTAGTTGACCAAGTTTTGATATCTTTTACAGAAAACTAGACAATTAGGCTCAAAGTTGACAGTTTGGGCGGGCTTCTATTAGAGCAAATAGGGTACCTATTACAGTAGCAATACGGTTATAAAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24250</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>175127</contig_pos>
        <strand>+</strand>
        <context>GAATTTGAMT[G/T]GKTATACCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTATTTTTCTAGTATACTACTTTTTTTTTTGAAAAACTGGAATTTGAAT</left_flank>
        <right_flank>GATATACCAACAAAGAAGTTTGGTAACATAGCCCTATACGTACTTTTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTACAGCTGTTGAAGAATGTAAGTTTTCCCATTTCTATCCTATCCAATTCGGGACGCCTTTTTTACTAACCGTAAACAAAATCCTTATTTCTCGTATTTTCACACCTACTTGTTTTTTCCGAGTGTATGTGACTGATACAGTATACCGGTGAGAAAGAAAAAAAGACAAATTTTTGACTGTTTTGGAGAAAATTCCTACACTTGGTGACTTGAAAAAGTGGTTAGAAATTTCAGAATATATCCTTCAAAATAAGAGCTTCATTTTTGTAGTTTATGACTTTCCTGAAAAATAAGGTCCTGCGAAATTATCCCACGCGGCTGCCTGCGGACCGCCGCCCGTGTTGCCAGAGTTCGCGAACGGAGAAACTCTTCAACGTCGAATATCTCTTTTGGACGGACATTTACAAAAAAAGTTGTTAACTGCAAAAATGGAGCTCCTTTTTTGAACGTTATTTTTCTAGTATACTACTTTTTTTTTTGAAAAACTGGAATTTGAATAGATATACCAACAAAGAAGTTTGGTAACATAGCCCTATACGTACTTTTTGAGCACAATTATCTCGCTTTCTATAAGAGGTATCAAAATTTTGTCAACGAATGAAATGTTTGTCATATTATGATGAACAATTTTGTAGTTGACCAAGTTTTGATATCTTTTACAGAAAACTAGACAATTAGGCTCAAAGTTGACAGTTTGGGCGGGCTTCTATTAGAGCAAATAGGGTACCTATTACAGTAGCAATACGGTTATAAAAATCGTCCACTATGAAAAGCTCGAAAACTCCCTATGTCCCAATCTCACGTTCGCTGGGGCGCGATTTCTGACCAGGCCTTTTGGAATGCTGTAAGCCAGACAGTTTCCCACTTTTTGACCTCCTAAATTTTAAAGATTTTTCACTAAAACAGTCAAAACATTTTCCCCGGGTTACTGTACACAACATATCAGCTGTTTTTTCTATATCTGTGTAGTTTTTGTTTGTGCTTCATGTTCAGTACATA</canonical>
            <polymorphic>CTTACAGCTGTTGAAGAATGTAAGTTTTCCCATTTCTATCCTATCCAATTCGGGACGCCTTTTTTACTAACCGTAAACAAAATCCTTATTTCTCGTATTTTCACACCTACTTGTTTTTTCCGAGTGTATGTGACTGATACAGTATACCGGTGAGAAAGAAAAAAAGACAAATTTTTGACTGTTTTGGAGAAAATTCCTACACTTGGTGACTTGAAAAAGTGGTTAGAAATTTCAGAATATATCCTTCAAAATAAGAGCTTCATTTTTGTAGTTTATGACTTTCCTGAAAAATAAGGTCCTGCGAAATTATCCCACGCGGCTGCCTGCGGACCGCCGCCCGTGTTGCCAGAGTTCGCGAACGGAGAAACTCTTCAACGTCGAATATCTCTTTTGGACGGACATTTACAAAAAAAGTTGTTAACTGCAAAAATGGAGCTCCTTTTTTGAACGTTATTTTTCTAGTATACTACTTTTTTTTTTGAAAAACTGGAATTTGAATKGATATACCAACAAAGAAGTTTGGTAACATAGCCCTATACGTACTTTTTGAGCACAATTATCTCGCTTTCTATAAGAGGTATCAAAATTTTGTCAACGAATGAAATGTTTGTCATATTATGATGAACAATTTTGTAGTTGACCAAGTTTTGATATCTTTTACAGAAAACTAGACAATTAGGCTCAAAGTTGACAGTTTGGGCGGGCTTCTATTAGAGCAAATAGGGTACCTATTACAGTAGCAATACGGTTATAAAAATCGTCCACTATGAAAAGCTCGAAAACTCCCTATGTCCCAATCTCACGTTCGCTGGGGCGCGATTTCTGACCAGGCCTTTTGGAATGCTGTAAGCCAGACAGTTTCCCACTTTTTGACCTCCTAAATTTTAAAGATTTTTCACTAAAACAGTCAAAACATTTTCCCCGGGTTACTGTACACAACATATCAGCTGTTTTTTCTATATCTGTGTAGTTTTTGTTTGTGCTTCATGTTCAGTACATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGACTTGAAAAAGTGGTTAG</pcr_primer_p1>
		<pcr_primer_p2>CGATTTTTATAACCGTATTGCTA</pcr_primer_p2>
		<pcr_amplicon_size>556</pcr_amplicon_size>
		<canonical_amplicon>GGTGACTTGAAAAAGTGGTTAGAAATTTCAGAATATATCCTTCAAAATAAGAGCTTCATTTTTGTAGTTTATGACTTTCCTGAAAAATAAGGTCCTGCGAAATTATCCCACGCGGCTGCCTGCGGACCGCCGCCCGTGTTGCCAGAGTTCGCGAACGGAGAAACTCTTCAACGTCGAATATCTCTTTTGGACGGACATTTACAAAAAAAGTTGTTAACTGCAAAAATGGAGCTCCTTTTTTGAACGTTATTTTTCTAGTATACTACTTTTTTTTTTGAAAAACTGGAATTTGAATAGATATACCAACAAAGAAGTTTGGTAACATAGCCCTATACGTACTTTTTGAGCACAATTATCTCGCTTTCTATAAGAGGTATCAAAATTTTGTCAACGAATGAAATGTTTGTCATATTATGATGAACAATTTTGTAGTTGACCAAGTTTTGATATCTTTTACAGAAAACTAGACAATTAGGCTCAAAGTTGACAGTTTGGGCGGGCTTCTATTAGAGCAAATAGGGTACCTATTACAGTAGCAATACGGTTATAAAAATCG</canonical_amplicon>
		<polymorphic_amplicon>GGTGACTTGAAAAAGTGGTTAGAAATTTCAGAATATATCCTTCAAAATAAGAGCTTCATTTTTGTAGTTTATGACTTTCCTGAAAAATAAGGTCCTGCGAAATTATCCCACGCGGCTGCCTGCGGACCGCCGCCCGTGTTGCCAGAGTTCGCGAACGGAGAAACTCTTCAACGTCGAATATCTCTTTTGGACGGACATTTACAAAAAAAGTTGTTAACTGCAAAAATGGAGCTCCTTTTTTGAACGTTATTTTTCTAGTATACTACTTTTTTTTTTGAAAAACTGGAATTTGAATKGATATACCAACAAAGAAGTTTGGTAACATAGCCCTATACGTACTTTTTGAGCACAATTATCTCGCTTTCTATAAGAGGTATCAAAATTTTGTCAACGAATGAAATGTTTGTCATATTATGATGAACAATTTTGTAGTTGACCAAGTTTTGATATCTTTTACAGAAAACTAGACAATTAGGCTCAAAGTTGACAGTTTGGGCGGGCTTCTATTAGAGCAAATAGGGTACCTATTACAGTAGCAATACGGTTATAAAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24251</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>175129</contig_pos>
        <strand>+</strand>
        <context>ATTTGAMTKG[G/T]TATACCAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATTTTTCTAGTATACTACTTTTTTTTTTGAAAAACTGGAATTTGAATAG</left_flank>
        <right_flank>TATACCAACAAAGAAGTTTGGTAACATAGCCCTATACGTACTTTTTGAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACAGCTGTTGAAGAATGTAAGTTTTCCCATTTCTATCCTATCCAATTCGGGACGCCTTTTTTACTAACCGTAAACAAAATCCTTATTTCTCGTATTTTCACACCTACTTGTTTTTTCCGAGTGTATGTGACTGATACAGTATACCGGTGAGAAAGAAAAAAAGACAAATTTTTGACTGTTTTGGAGAAAATTCCTACACTTGGTGACTTGAAAAAGTGGTTAGAAATTTCAGAATATATCCTTCAAAATAAGAGCTTCATTTTTGTAGTTTATGACTTTCCTGAAAAATAAGGTCCTGCGAAATTATCCCACGCGGCTGCCTGCGGACCGCCGCCCGTGTTGCCAGAGTTCGCGAACGGAGAAACTCTTCAACGTCGAATATCTCTTTTGGACGGACATTTACAAAAAAAGTTGTTAACTGCAAAAATGGAGCTCCTTTTTTGAACGTTATTTTTCTAGTATACTACTTTTTTTTTTGAAAAACTGGAATTTGAATAGATATACCAACAAAGAAGTTTGGTAACATAGCCCTATACGTACTTTTTGAGCACAATTATCTCGCTTTCTATAAGAGGTATCAAAATTTTGTCAACGAATGAAATGTTTGTCATATTATGATGAACAATTTTGTAGTTGACCAAGTTTTGATATCTTTTACAGAAAACTAGACAATTAGGCTCAAAGTTGACAGTTTGGGCGGGCTTCTATTAGAGCAAATAGGGTACCTATTACAGTAGCAATACGGTTATAAAAATCGTCCACTATGAAAAGCTCGAAAACTCCCTATGTCCCAATCTCACGTTCGCTGGGGCGCGATTTCTGACCAGGCCTTTTGGAATGCTGTAAGCCAGACAGTTTCCCACTTTTTGACCTCCTAAATTTTAAAGATTTTTCACTAAAACAGTCAAAACATTTTCCCCGGGTTACTGTACACAACATATCAGCTGTTTTTTCTATATCTGTGTAGTTTTTGTTTGTGCTTCATGTTCAGTACATATT</canonical>
            <polymorphic>TACAGCTGTTGAAGAATGTAAGTTTTCCCATTTCTATCCTATCCAATTCGGGACGCCTTTTTTACTAACCGTAAACAAAATCCTTATTTCTCGTATTTTCACACCTACTTGTTTTTTCCGAGTGTATGTGACTGATACAGTATACCGGTGAGAAAGAAAAAAAGACAAATTTTTGACTGTTTTGGAGAAAATTCCTACACTTGGTGACTTGAAAAAGTGGTTAGAAATTTCAGAATATATCCTTCAAAATAAGAGCTTCATTTTTGTAGTTTATGACTTTCCTGAAAAATAAGGTCCTGCGAAATTATCCCACGCGGCTGCCTGCGGACCGCCGCCCGTGTTGCCAGAGTTCGCGAACGGAGAAACTCTTCAACGTCGAATATCTCTTTTGGACGGACATTTACAAAAAAAGTTGTTAACTGCAAAAATGGAGCTCCTTTTTTGAACGTTATTTTTCTAGTATACTACTTTTTTTTTTGAAAAACTGGAATTTGAATAGKTATACCAACAAAGAAGTTTGGTAACATAGCCCTATACGTACTTTTTGAGCACAATTATCTCGCTTTCTATAAGAGGTATCAAAATTTTGTCAACGAATGAAATGTTTGTCATATTATGATGAACAATTTTGTAGTTGACCAAGTTTTGATATCTTTTACAGAAAACTAGACAATTAGGCTCAAAGTTGACAGTTTGGGCGGGCTTCTATTAGAGCAAATAGGGTACCTATTACAGTAGCAATACGGTTATAAAAATCGTCCACTATGAAAAGCTCGAAAACTCCCTATGTCCCAATCTCACGTTCGCTGGGGCGCGATTTCTGACCAGGCCTTTTGGAATGCTGTAAGCCAGACAGTTTCCCACTTTTTGACCTCCTAAATTTTAAAGATTTTTCACTAAAACAGTCAAAACATTTTCCCCGGGTTACTGTACACAACATATCAGCTGTTTTTTCTATATCTGTGTAGTTTTTGTTTGTGCTTCATGTTCAGTACATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGACTTGAAAAAGTGGTTAG</pcr_primer_p1>
		<pcr_primer_p2>CGATTTTTATAACCGTATTGCTA</pcr_primer_p2>
		<pcr_amplicon_size>556</pcr_amplicon_size>
		<canonical_amplicon>GGTGACTTGAAAAAGTGGTTAGAAATTTCAGAATATATCCTTCAAAATAAGAGCTTCATTTTTGTAGTTTATGACTTTCCTGAAAAATAAGGTCCTGCGAAATTATCCCACGCGGCTGCCTGCGGACCGCCGCCCGTGTTGCCAGAGTTCGCGAACGGAGAAACTCTTCAACGTCGAATATCTCTTTTGGACGGACATTTACAAAAAAAGTTGTTAACTGCAAAAATGGAGCTCCTTTTTTGAACGTTATTTTTCTAGTATACTACTTTTTTTTTTGAAAAACTGGAATTTGAATAGATATACCAACAAAGAAGTTTGGTAACATAGCCCTATACGTACTTTTTGAGCACAATTATCTCGCTTTCTATAAGAGGTATCAAAATTTTGTCAACGAATGAAATGTTTGTCATATTATGATGAACAATTTTGTAGTTGACCAAGTTTTGATATCTTTTACAGAAAACTAGACAATTAGGCTCAAAGTTGACAGTTTGGGCGGGCTTCTATTAGAGCAAATAGGGTACCTATTACAGTAGCAATACGGTTATAAAAATCG</canonical_amplicon>
		<polymorphic_amplicon>GGTGACTTGAAAAAGTGGTTAGAAATTTCAGAATATATCCTTCAAAATAAGAGCTTCATTTTTGTAGTTTATGACTTTCCTGAAAAATAAGGTCCTGCGAAATTATCCCACGCGGCTGCCTGCGGACCGCCGCCCGTGTTGCCAGAGTTCGCGAACGGAGAAACTCTTCAACGTCGAATATCTCTTTTGGACGGACATTTACAAAAAAAGTTGTTAACTGCAAAAATGGAGCTCCTTTTTTGAACGTTATTTTTCTAGTATACTACTTTTTTTTTTGAAAAACTGGAATTTGAATAGKTATACCAACAAAGAAGTTTGGTAACATAGCCCTATACGTACTTTTTGAGCACAATTATCTCGCTTTCTATAAGAGGTATCAAAATTTTGTCAACGAATGAAATGTTTGTCATATTATGATGAACAATTTTGTAGTTGACCAAGTTTTGATATCTTTTACAGAAAACTAGACAATTAGGCTCAAAGTTGACAGTTTGGGCGGGCTTCTATTAGAGCAAATAGGGTACCTATTACAGTAGCAATACGGTTATAAAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24252</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>177898</contig_pos>
        <strand></strand>
        <context>gaatacccac[A/G]aggtgaatat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCAACTTTCAAAAGTTAGGCCATCATGTTAAATGGCCTAGAATACCCAC</left_flank>
        <right_flank>AGGTGAATATCAGGTCATTTCTAGGAAATGCACAAAAATGGCCTAGACAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGGTATCAATAGAGCGAATTTGCACTTAAACAACAATTTTTTAAACTTTTCAGATGGAAAAGTACACAATGTGTTCGGAAATCGCCGATCAGACTGCGGAATCGCTTGGAGAGCTTTTCGTGCCGTGTGAGATGCCTGAGCAGCCAAAGAACAATTCGTTTTTGAAGGTGATTTTTTTAGTTTTGCAGAGCGTTTTCTAAATTAGCTTGGAAGTTTCGTTTCAAATAATAATCAAGGCTTGGCAGGGTGTATCGTCGATCTTTGGAGGCACTCCGCGCAACGATCCGAATGATATTGATGCCATTTGTAAGTTTTTTGGGCTATGTGGTCTAGAGGGCACTTTCGTAAGTTGGGATTTCTAGGCCACCATGGTAAATGGCCTAGTAATAGACTGCTATTTGCCCGATGTTTTTTTTCCTGGTCCATCTACTATGATGGCCTAGAAAACTCAACTTTCAAAAGTTAGGCCATCATGTTAAATGGCCTAGAATACCCACAAGGTGAATATCAGGTCATTTCTAGGAAATGCACAAAAATGGCCTAGACAACTCAACTTGCAAAAATTAGGCCACCATAGTGAACGGGCTAGAAAACAGATCAGATGCATGTCAGACCATTTCTGGACCATAAACTAGGGTGGCCTAAAAAATCATTTTGAGAAAGTTCGGCCACGTTACTCTAATTTTGTAAAAAAAATAGGCCACCAATTTGTTTGGCTACGAAATGGCCTCATGAAGTGGTGGCCTAACTTTTTCAAGTTGATTTTTCTAGGCCACTGTGTTGAATGACCAAGTAATGGTCTGATAATCACCTGACGTGTTTTCTATGCCATTTTAAAATGGTGACCTAGAAAACTCAACATGCGAAAATTAGGCCACCATGTTAACCATGACCTAAAAAACACACCAGGTGCATGTAAGCTGGTATTCACTTGGTGGGTGGCCTAACATTCGAAAGCTGAGTTTTGTAGGCCTTCATGGTAAATGGTCTAGAAAACC</canonical>
            <polymorphic>AGAGGTATCAATAGAGCGAATTTGCACTTAAACAACAATTTTTTAAACTTTTCAGATGGAAAAGTACACAATGTGTTCGGAAATCGCCGATCAGACTGCGGAATCGCTTGGAGAGCTTTTCGTGCCGTGTGAGATGCCTGAGCAGCCAAAGAACAATTCGTTTTTGAAGGTGATTTTTTTAGTTTTGCAGAGCGTTTTCTAAATTAGCTTGGAAGTTTCGTTTCAAATAATAATCAAGGCTTGGCAGGGTGTATCGTCGATCTTTGGAGGCACTCCGCGCAACGATCCGAATGATATTGATGCCATTTGTAAGTTTTTTGGGCTATGTGGTCTAGAGGGCACTTTCGTAAGTTGGGATTTCTAGGCCACCATGGTAAATGGCCTAGTAATAGACTGCTATTTGCCCGATGTTTTTTTTCCTGGTCCATCTACTATGATGGCCTAGAAAACTCAACTTTCAAAAGTTAGGCCATCATGTTAAATGGCCTAGAATACCCACRAGGTGAATATCAGGTCATTTCTAGGAAATGCACAAAAATGGCCTAGACAACTCAACTTGCAAAAATTAGGCCACCATAGTGAACGGGCTAGAAAACAGATCAGATGCATGTCAGACCATTTCTGGACCATAAACTAGGGTGGCCTAAAAAATCATTTTGAGAAAGTTCGGCCACGTTACTCTAATTTTGTAAAAAAAATAGGCCACCAATTTGTTTGGCTACGAAATGGCCTCATGAAGTGGTGGCCTAACTTTTTCAAGTTGATTTTTCTAGGCCACTGTGTTGAATGACCAAGTAATGGTCTGATAATCACCTGACGTGTTTTCTATGCCATTTTAAAATGGTGACCTAGAAAACTCAACATGCGAAAATTAGGCCACCATGTTAACCATGACCTAAAAAACACACCAGGTGCATGTAAGCTGGTATTCACTTGGTGGGTGGCCTAACATTCGAAAGCTGAGTTTTGTAGGCCTTCATGGTAAATGGTCTAGAAAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTGATGCCATTTGTAAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>AATAGACGATGTAACACTTTATGG</pcr_primer_p2>
		<pcr_amplicon_size>730</pcr_amplicon_size>
		<canonical_amplicon>TATTGATGCCATTTGTAAGTTTTTTGGGCTATGTGGTCTAGAGGGCACTTTCGTAAGTTGGGATTTCTAGGCCACCATGGTAAATGGCCTAGTAATAGACTGCTATTTGCCCGATGTTTTTTTTCCTGGTCCATCTACTATGATGGCCTAGAAAACTCAACTTTCAAAAGTTAGGCCATCATGTTAAATGGCCTAGAATACCCACAAGGTGAATATCAGGTCATTTCTA</canonical_amplicon>
		<polymorphic_amplicon>TATTGATGCCATTTGTAAGTTTTTTGGGCTATGTGGTCTAGAGGGCACTTTCGTAAGTTGGGATTTCTAGGCCACCATGGTAAATGGCCTAGTAATAGACTGCTATTTGCCCGATGTTTTTTTTCCTGGTCCATCTACTATGATGGCCTAGAAAACTCAACTTTCAAAAGTTAGGCCATCATGTTAAATGGCCTAGAATACCCACRAGGTGAATATCAGGTCATTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24253</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>207944</contig_pos>
        <strand>+</strand>
        <context>CTGTTTCTTG[A/G]GMTWTYTGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTG</left_flank>
        <right_flank>GATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGAAACAGACTATTCGTGGATCTCTGATGAGGAAAACGAAATAAGGAGGACAACAAGACCTAAAGACCAAACTGAAGGACCACGACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTG</canonical>
            <polymorphic>GGGAAACAGACTATTCGTGGATCTCTGATGAGGAAAACGAAATAAGGAGGACAACAAGACCTAAAGACCAAACTGAAGGACCACGACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGRGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>496 286 133 46 30 9</canonical_bands>
                <polymorphic_bands>782 133 46 30 9</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>496 324 180</canonical_bands>
                <polymorphic_bands>820 180</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATATCTACTCACCTTCCATTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGCTGGTTTTTCATTATC</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGRGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24254</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>207946</contig_pos>
        <strand>+</strand>
        <context>GTTTCTTGRG[A/C]TWTYTGTATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAG</left_flank>
        <right_flank>TTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAACAGACTATTCGTGGATCTCTGATGAGGAAAACGAAATAAGGAGGACAACAAGACCTAAAGACCAAACTGAAGGACCACGACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTC</canonical>
            <polymorphic>GAAACAGACTATTCGTGGATCTCTGATGAGGAAAACGAAATAAGGAGGACAACAAGACCTAAAGACCAAACTGAAGGACCACGACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGMTTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATATCTACTCACCTTCCATTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGCTGGTTTTTCATTATC</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGMTTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24255</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>207948</contig_pos>
        <strand>+</strand>
        <context>TTCTTGRGMT[A/T]TYTGTATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGAT</left_flank>
        <right_flank>TCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAGACTATTCGTGGATCTCTGATGAGGAAAACGAAATAAGGAGGACAACAAGACCTAAAGACCAAACTGAAGGACCACGACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCT</canonical>
            <polymorphic>AACAGACTATTCGTGGATCTCTGATGAGGAAAACGAAATAAGGAGGACAACAAGACCTAAAGACCAAACTGAAGGACCACGACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATWTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATATCTACTCACCTTCCATTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGCTGGTTTTTCATTATC</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATWTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24256</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>207950</contig_pos>
        <strand>+</strand>
        <context>CTTGRGMTWT[C/T]TGTATTTTGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTT</left_flank>
        <right_flank>TGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGACTATTCGTGGATCTCTGATGAGGAAAACGAAATAAGGAGGACAACAAGACCTAAAGACCAAACTGAAGGACCACGACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTG</canonical>
            <polymorphic>CAGACTATTCGTGGATCTCTGATGAGGAAAACGAAATAAGGAGGACAACAAGACCTAAAGACCAAACTGAAGGACCACGACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTYTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATATCTACTCACCTTCCATTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGCTGGTTTTTCATTATC</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTYTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24257</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>207967</contig_pos>
        <strand>+</strand>
        <context>TTGCTAAATA[A/C]TTGYGAAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATA</left_flank>
        <right_flank>TTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGATGAGGAAAACGAAATAAGGAGGACAACAAGACCTAAAGACCAAACTGAAGGACCACGACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGG</canonical>
            <polymorphic>TCTGATGAGGAAAACGAAATAAGGAGGACAACAAGACCTAAAGACCAAACTGAAGGACCACGACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAMTTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>220 175 148 141 127 48 39 35 21 16 9 8 7 6</canonical_bands>
                <polymorphic_bands>220 175 148 141 127 83 39 21 16 9 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATATCTACTCACCTTCCATTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGCTGGTTTTTCATTATC</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAMTTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24258</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>207971</contig_pos>
        <strand>+</strand>
        <context>TAAATAMTTG[C/T]GAAAAGTCYT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTG</left_flank>
        <right_flank>GAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAGGAAAACGAAATAAGGAGGACAACAAGACCTAAAGACCAAACTGAAGGACCACGACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAAC</canonical>
            <polymorphic>ATGAGGAAAACGAAATAAGGAGGACAACAAGACCTAAAGACCAAACTGAAGGACCACGACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGYGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>141 135 121 114 107 107 77 59 56 39 19 13 12</canonical_bands>
                <polymorphic_bands>228 141 135 114 107 77 59 56 39 19 13 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATATCTACTCACCTTCCATTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGCTGGTTTTTCATTATC</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGYGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24259</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>207980</contig_pos>
        <strand>+</strand>
        <context>GYGAAAAGTC[C/T]TCAAGGATKT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTC</left_flank>
        <right_flank>TCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGAAATAAGGAGGACAACAAGACCTAAAGACCAAACTGAAGGACCACGACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAACCAAGCTGCT</canonical>
            <polymorphic>ACGAAATAAGGAGGACAACAAGACCTAAAGACCAAACTGAAGGACCACGACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCYTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAACCAAGCTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATATCTACTCACCTTCCATTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGCTGGTTTTTCATTATC</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCYTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24260</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>207989</contig_pos>
        <strand>+</strand>
        <context>CYTCAAGGAT[G/T]TSTTTRTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGAT</left_flank>
        <right_flank>TGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGGACAACAAGACCTAAAGACCAAACTGAAGGACCACGACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAACCAAGCTGCTCCTAGAATT</canonical>
            <polymorphic>GGAGGACAACAAGACCTAAAGACCAAACTGAAGGACCACGACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATKTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAACCAAGCTGCTCCTAGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATATCTACTCACCTTCCATTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGCTGGTTTTTCATTATC</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATKTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24261</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>207991</contig_pos>
        <strand>+</strand>
        <context>TCAAGGATKT[C/G]TTTRTCAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTT</left_flank>
        <right_flank>TTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGACAACAAGACCTAAAGACCAAACTGAAGGACCACGACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAACCAAGCTGCTCCTAGAATTTG</canonical>
            <polymorphic>AGGACAACAAGACCTAAAGACCAAACTGAAGGACCACGACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTSTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAACCAAGCTGCTCCTAGAATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATATCTACTCACCTTCCATTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGCTGGTTTTTCATTATC</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTSTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24262</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>207995</contig_pos>
        <strand>+</strand>
        <context>GGATKTSTTT[A/G]TCAAAAATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTT</left_flank>
        <right_flank>TCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACAAGACCTAAAGACCAAACTGAAGGACCACGACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAACCAAGCTGCTCCTAGAATTTGAAAA</canonical>
            <polymorphic>CAACAAGACCTAAAGACCAAACTGAAGGACCACGACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTRTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAACCAAGCTGCTCCTAGAATTTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATATCTACTCACCTTCCATTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGCTGGTTTTTCATTATC</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTRTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24263</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>208010</contig_pos>
        <strand>+</strand>
        <context>AAATTTACAA[A/C]ARYTYTGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAA</left_flank>
        <right_flank>AGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCAAACTGAAGGACCACGACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAACCAAGCTGCTCCTAGAATTTGAAAACTTCGTAAATTTACC</canonical>
            <polymorphic>ACCAAACTGAAGGACCACGACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAAMAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAACCAAGCTGCTCCTAGAATTTGAAAACTTCGTAAATTTACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATATCTACTCACCTTCCATTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGCTGGTTTTTCATTATC</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAAMAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24264</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>208012</contig_pos>
        <strand>+</strand>
        <context>ATTTACAAMA[A/G]YTYTGTTTWA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACA</left_flank>
        <right_flank>TTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAACTGAAGGACCACGACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAACCAAGCTGCTCCTAGAATTTGAAAACTTCGTAAATTTACCAA</canonical>
            <polymorphic>CAAACTGAAGGACCACGACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACARTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAACCAAGCTGCTCCTAGAATTTGAAAACTTCGTAAATTTACCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATATCTACTCACCTTCCATTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGCTGGTTTTTCATTATC</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACARTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24265</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>208013</contig_pos>
        <strand>+</strand>
        <context>TTTACAAMAR[C/T]TYTGTTTWAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAG</left_flank>
        <right_flank>TCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTGAAGGACCACGACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAACCAAGCTGCTCCTAGAATTTGAAAACTTCGTAAATTTACCAAT</canonical>
            <polymorphic>AAACTGAAGGACCACGACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGYTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAACCAAGCTGCTCCTAGAATTTGAAAACTTCGTAAATTTACCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATATCTACTCACCTTCCATTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGCTGGTTTTTCATTATC</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGYTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24266</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>208015</contig_pos>
        <strand>+</strand>
        <context>TACAAMARYT[C/T]TGTTTWAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTT</left_flank>
        <right_flank>TGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGAAGGACCACGACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAACCAAGCTGCTCCTAGAATTTGAAAACTTCGTAAATTTACCAATTC</canonical>
            <polymorphic>ACTGAAGGACCACGACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTYTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAACCAAGCTGCTCCTAGAATTTGAAAACTTCGTAAATTTACCAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATATCTACTCACCTTCCATTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGCTGGTTTTTCATTATC</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTYTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24267</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>208021</contig_pos>
        <strand>+</strand>
        <context>ARYTYTGTTT[A/T]AATTARAWTM</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTT</left_flank>
        <right_flank>AATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGACCACGACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAACCAAGCTGCTCCTAGAATTTGAAAACTTCGTAAATTTACCAATTCCCATTT</canonical>
            <polymorphic>GGACCACGACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTWAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAACCAAGCTGCTCCTAGAATTTGAAAACTTCGTAAATTTACCAATTCCCATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>256 245 138 124 121 104 12</canonical_bands>
                <polymorphic_bands>349 256 138 124 121 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATATCTACTCACCTTCCATTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGCTGGTTTTTCATTATC</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTWAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24268</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>208027</contig_pos>
        <strand>+</strand>
        <context>GTTTWAATTA[A/G]AWTMTARGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTA</left_flank>
        <right_flank>AATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAACCAAGCTGCTCCTAGAATTTGAAAACTTCGTAAATTTACCAATTCCCATTTCCTTAC</canonical>
            <polymorphic>CGACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTARAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAACCAAGCTGCTCCTAGAATTTGAAAACTTCGTAAATTTACCAATTCCCATTTCCTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATATCTACTCACCTTCCATTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGCTGGTTTTTCATTATC</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTARAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24269</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>208029</contig_pos>
        <strand>+</strand>
        <context>TTWAATTARA[A/T]TMTARGAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGA</left_flank>
        <right_flank>TATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAACCAAGCTGCTCCTAGAATTTGAAAACTTCGTAAATTTACCAATTCCCATTTCCTTACCT</canonical>
            <polymorphic>ACAGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAWTATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAACCAAGCTGCTCCTAGAATTTGAAAACTTCGTAAATTTACCAATTCCCATTTCCTTACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATATCTACTCACCTTCCATTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGCTGGTTTTTCATTATC</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAWTATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24270</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>208031</contig_pos>
        <strand>+</strand>
        <context>WAATTARAWT[A/C]TARGAGAAYG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAAT</left_flank>
        <right_flank>TAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAACCAAGCTGCTCCTAGAATTTGAAAACTTCGTAAATTTACCAATTCCCATTTCCTTACCTCT</canonical>
            <polymorphic>AGAGACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATMTAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAACCAAGCTGCTCCTAGAATTTGAAAACTTCGTAAATTTACCAATTCCCATTTCCTTACCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATATCTACTCACCTTCCATTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGCTGGTTTTTCATTATC</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATMTAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24271</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>208034</contig_pos>
        <strand>+</strand>
        <context>TTARAWTMTA[A/G]GAGAAYGKAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATA</left_flank>
        <right_flank>GAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAACCAAGCTGCTCCTAGAATTTGAAAACTTCGTAAATTTACCAATTCCCATTTCCTTACCTCTCAT</canonical>
            <polymorphic>GACTAGAATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATARGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAACCAAGCTGCTCCTAGAATTTGAAAACTTCGTAAATTTACCAATTCCCATTTCCTTACCTCTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATATCTACTCACCTTCCATTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGCTGGTTTTTCATTATC</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATARGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24272</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>208040</contig_pos>
        <strand>+</strand>
        <context>TMTARGAGAA[C/T]GKAATGTCCR</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAA</left_flank>
        <right_flank>GTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAACCAAGCTGCTCCTAGAATTTGAAAACTTCGTAAATTTACCAATTCCCATTTCCTTACCTCTCATTCTATT</canonical>
            <polymorphic>AATAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAAYGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAACCAAGCTGCTCCTAGAATTTGAAAACTTCGTAAATTTACCAATTCCCATTTCCTTACCTCTCATTCTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATATCTACTCACCTTCCATTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGCTGGTTTTTCATTATC</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAAYGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24273</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>208042</contig_pos>
        <strand>+</strand>
        <context>TARGAGAAYG[G/T]AATGTCCRAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATG</left_flank>
        <right_flank>AATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAACCAAGCTGCTCCTAGAATTTGAAAACTTCGTAAATTTACCAATTCCCATTTCCTTACCTCTCATTCTATTCC</canonical>
            <polymorphic>TAACGAAGACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGKAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAACCAAGCTGCTCCTAGAATTTGAAAACTTCGTAAATTTACCAATTCCCATTTCCTTACCTCTCATTCTATTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATATCTACTCACCTTCCATTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGCTGGTTTTTCATTATC</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGKAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24274</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>208050</contig_pos>
        <strand>+</strand>
        <context>YGKAATGTCC[A/G]AACCCGAgaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCC</left_flank>
        <right_flank>AACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAACCAAGCTGCTCCTAGAATTTGAAAACTTCGTAAATTTACCAATTCCCATTTCCTTACCTCTCATTCTATTCCAATTCTGG</canonical>
            <polymorphic>ACGGACCGAAAACCGAAGCAAAAAGAGATCCCAAAAACCATCGACGAAGAGAAGCGCGCAAGAAAGCTAAAAAGAAAGGTATCACAAAAAGAAATTAAGTTCACAAAGCTCTGACATTACGACGTCGACTCGGTATCCTTTGTCCAGTTGCTTTTCCGAAATCTGAAAATGGACTAGTTTTTTACCGATTCTCTTTTCCCTAATGGACTAAAACATTAAAATTGAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCRAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAGCGATTGTGCGAACCCGAGAGTCTTGATTTTTTCCCATTCCCGTTTCCGAACCCCTCATTCTATTACTCCTGACGTCCTCGTTTCTGCCAATCCTGTTCTGGAAGCTGTCCTTGCAATTGGTGCATCCCGGAAACCAAGCTGCTCCTAGAATTTGAAAACTTCGTAAATTTACCAATTCCCATTTCCTTACCTCTCATTCTATTCCAATTCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATATCTACTCACCTTCCATTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGCTGGTTTTTCATTATC</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCAAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATATCTACTCACCTTCCATTATATTCCAATACTCCTGTCGTCTTCATCCCTGCTCATCTTGCCCTGGAAGCTGTCCTGCCATTCGGTGCATCCCGGAAACCAAGTTGCTCTTGGAACTTGAAAGCTTTAAAAAAATTATTAATTCTCTCATTTTTCCTGTTTCTTGAGATTTCTGTATTTTGCTAAATAATTGTGAAAAGTCGTCAAGGATTTGTTTGTCAAAAATTTACAACAGTTCTGTTTTAATTAGAATATAAGAGAATGTAATGTCCRAACCCGAGAAAATTTCGTCAATTTACCAATTCAAATTCCCTCACCTTGCATATTATTCTGCTTCTGCCAGTACTCCTGTCATCATGCTGTTTCAAATCCGTGCAAATCCTGGAAGCCGGCCTGATAGTTGTCCTCGAAGTGTTCGAGGTTGGTGCATCCCGGAGACCAATCAGCTCCTGAAAATTGAACGTTCAAAACTAAATGCTGATTTTTCTTAAGTTTTCGAAGAGTTTTATCATTATTTTACAAAATGACTTTCTTTTTTGATAATGAAAAACCAGCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24275</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>238004</contig_pos>
        <strand>+</strand>
        <context>CGAATTTTTC[A/G]CAGTTTCAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATTAGCATCTCGGAGGGAAATTCAAAAATAGATTTTTCCGAATTTTTC</left_flank>
        <right_flank>CAGTTTCAAAAAATCCGACTATTAGTTCACATGAACTGATTCTAGAATCA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGCGTTCTATTAGAGTGGTTACGGTAAGTAGATTTTCGGATTTTGTCAAAATTTTGAATTTTTAAGAATTTCATATTTTTGGAAACTTTGTGATTCCTTTTATTTCAGATTTTCCGAGATTTTTTCAAAGTTGGATTTTTCAGAATTTATGAAAATTTGTCTTTTCAGGAATTTAGGAATTTTTGGAGTTTTAGATGTTTTGAAAATTATGAACTTTTGAATTTTCATAAATTTTTAGAATTCCTAGAAATTCTTGACTTTCCGGAATTAAATTTGGATTTCTATGAATTTTCAGAATTTTTCGAATTTTTAGAAAATTGAATTTTTTTTGCCAAATGTTATGGAAATTTTGGACTTTTTTTAATTTTAGAACTTAGAATTTTTATGAATTTGAAGAATTTTTGGATTTTTTCAAAACTTTGAAATTTTAAAAACCTTCAAAACCAAACATTAGCATCTCGGAGGGAAATTCAAAAATAGATTTTTCCGAATTTTTCGCAGTTTCAAAAAATCCGACTATTAGTTCACATGAACTGATTCTAGAATCAAAATTTCAAAGAAGTCACCTCCTCCAAAAGTGAATTTCAAAACTAAATAAAATAAAAAGAAAAGAAAAATAAGAAAATAGCAAAAAAAAAAGCGGAGCCGTTTTTCTTTCGTCTTCCCTCCGGAGTGTGGCTATAAATTTAGCGTCGATTTGATGATGACGTAGTTAGGGCCACCAGCCTCACCTTTTTTGGGAGGAGGGTCTTCTTTTTTTGTTGCAAAATTCGCTCTATTGATAATAGTATGAATAGAGCGAATTTGCTGCAGAAGGAGGGTAAAAAGTGACGTTTTGAAAATTTTTGTTTGGTGATAAAAAACAAAACATATTTAGGTAGAGATAGAGAGCTAGAGAGGAAGTGAAGAGGCGGTGATAACCGAATTTCTTCTTGTTTTATTTTTTTATTTGGATTTTGATGACAAGCCAATAGGGGATTATCAAGATATTTATTATG</canonical>
            <polymorphic>GTGGCGTTCTATTAGAGTGGTTACGGTAAGTAGATTTTCGGATTTTGTCAAAATTTTGAATTTTTAAGAATTTCATATTTTTGGAAACTTTGTGATTCCTTTTATTTCAGATTTTCCGAGATTTTTTCAAAGTTGGATTTTTCAGAATTTATGAAAATTTGTCTTTTCAGGAATTTAGGAATTTTTGGAGTTTTAGATGTTTTGAAAATTATGAACTTTTGAATTTTCATAAATTTTTAGAATTCCTAGAAATTCTTGACTTTCCGGAATTAAATTTGGATTTCTATGAATTTTCAGAATTTTTCGAATTTTTAGAAAATTGAATTTTTTTTGCCAAATGTTATGGAAATTTTGGACTTTTTTTAATTTTAGAACTTAGAATTTTTATGAATTTGAAGAATTTTTGGATTTTTTCAAAACTTTGAAATTTTAAAAACCTTCAAAACCAAACATTAGCATCTCGGAGGGAAATTCAAAAATAGATTTTTCCGAATTTTTCRCAGTTTCAAAAAATCCGACTATTAGTTCACATGAACTGATTCTAGAATCAAAATTTCAAAGAAGTCACCTCCTCCAAAAGTGAATTTCAAAACTAAATAAAATAAAAAGAAAAGAAAAATAAGAAAATAGCAAAAAAAAAAGCGGAGCCGTTTTTCTTTCGTCTTCCCTCCGGAGTGTGGCTATAAATTTAGCGTCGATTTGATGATGACGTAGTTAGGGCCACCAGCCTCACCTTTTTTGGGAGGAGGGTCTTCTTTTTTTGTTGCAAAATTCGCTCTATTGATAATAGTATGAATAGAGCGAATTTGCTGCAGAAGGAGGGTAAAAAGTGACGTTTTGAAAATTTTTGTTTGGTGATAAAAAACAAAACATATTTAGGTAGAGATAGAGAGCTAGAGAGGAAGTGAAGAGGCGGTGATAACCGAATTTCTTCTTGTTTTATTTTTTTATTTGGATTTTGATGACAAGCCAATAGGGGATTATCAAGATATTTATTATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTTATGGAAATTTTGGACTT</pcr_primer_p1>
		<pcr_primer_p2>AATTCACTTTTGGAGGAGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATGTTATGGAAATTTTGGACTTTTTTTAATTTTAGAACTTAGAATTTTTATGAATTTGAAGAATTTTTGGATTTTTTCAAAACTTTGAAATTTTAAAAACCTTCAAAACCAAACATTAGCATCTCGGAGGGAAATTCAAAAATAGATTTTTCCGAATTTTTCGCAGTTTCAAAAAATCCGACTATTAGTTCACATGAACTGATTCTAGAATCAAAATTTCAAAGAAGTCACCTCCTCCAAAAGTGAATT</canonical_amplicon>
		<polymorphic_amplicon>AATGTTATGGAAATTTTGGACTTTTTTTAATTTTAGAACTTAGAATTTTTATGAATTTGAAGAATTTTTGGATTTTTTCAAAACTTTGAAATTTTAAAAACCTTCAAAACCAAACATTAGCATCTCGGAGGGAAATTCAAAAATAGATTTTTCCGAATTTTTCRCAGTTTCAAAAAATCCGACTATTAGTTCACATGAACTGATTCTAGAATCAAAATTTCAAAGAAGTCACCTCCTCCAAAAGTGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24276</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>238039</contig_pos>
        <strand>+</strand>
        <context>GTTCACATGA[A/C]CTGATTCTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTCCGAATTTTTCGCAGTTTCAAAAAATCCGACTATTAGTTCACATGA</left_flank>
        <right_flank>CTGATTCTAGAATCAAAATTTCAAAGAAGTCACCTCCTCCAAAAGTGAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGGATTTTGTCAAAATTTTGAATTTTTAAGAATTTCATATTTTTGGAAACTTTGTGATTCCTTTTATTTCAGATTTTCCGAGATTTTTTCAAAGTTGGATTTTTCAGAATTTATGAAAATTTGTCTTTTCAGGAATTTAGGAATTTTTGGAGTTTTAGATGTTTTGAAAATTATGAACTTTTGAATTTTCATAAATTTTTAGAATTCCTAGAAATTCTTGACTTTCCGGAATTAAATTTGGATTTCTATGAATTTTCAGAATTTTTCGAATTTTTAGAAAATTGAATTTTTTTTGCCAAATGTTATGGAAATTTTGGACTTTTTTTAATTTTAGAACTTAGAATTTTTATGAATTTGAAGAATTTTTGGATTTTTTCAAAACTTTGAAATTTTAAAAACCTTCAAAACCAAACATTAGCATCTCGGAGGGAAATTCAAAAATAGATTTTTCCGAATTTTTCGCAGTTTCAAAAAATCCGACTATTAGTTCACATGAACTGATTCTAGAATCAAAATTTCAAAGAAGTCACCTCCTCCAAAAGTGAATTTCAAAACTAAATAAAATAAAAAGAAAAGAAAAATAAGAAAATAGCAAAAAAAAAAGCGGAGCCGTTTTTCTTTCGTCTTCCCTCCGGAGTGTGGCTATAAATTTAGCGTCGATTTGATGATGACGTAGTTAGGGCCACCAGCCTCACCTTTTTTGGGAGGAGGGTCTTCTTTTTTTGTTGCAAAATTCGCTCTATTGATAATAGTATGAATAGAGCGAATTTGCTGCAGAAGGAGGGTAAAAAGTGACGTTTTGAAAATTTTTGTTTGGTGATAAAAAACAAAACATATTTAGGTAGAGATAGAGAGCTAGAGAGGAAGTGAAGAGGCGGTGATAACCGAATTTCTTCTTGTTTTATTTTTTTATTTGGATTTTGATGACAAGCCAATAGGGGATTATCAAGATATTTATTATGGGGAGAGAACAGAATAATATTCTGGAAGTTCCTTT</canonical>
            <polymorphic>TTTCGGATTTTGTCAAAATTTTGAATTTTTAAGAATTTCATATTTTTGGAAACTTTGTGATTCCTTTTATTTCAGATTTTCCGAGATTTTTTCAAAGTTGGATTTTTCAGAATTTATGAAAATTTGTCTTTTCAGGAATTTAGGAATTTTTGGAGTTTTAGATGTTTTGAAAATTATGAACTTTTGAATTTTCATAAATTTTTAGAATTCCTAGAAATTCTTGACTTTCCGGAATTAAATTTGGATTTCTATGAATTTTCAGAATTTTTCGAATTTTTAGAAAATTGAATTTTTTTTGCCAAATGTTATGGAAATTTTGGACTTTTTTTAATTTTAGAACTTAGAATTTTTATGAATTTGAAGAATTTTTGGATTTTTTCAAAACTTTGAAATTTTAAAAACCTTCAAAACCAAACATTAGCATCTCGGAGGGAAATTCAAAAATAGATTTTTCCGAATTTTTCGCAGTTTCAAAAAATCCGACTATTAGTTCACATGAMCTGATTCTAGAATCAAAATTTCAAAGAAGTCACCTCCTCCAAAAGTGAATTTCAAAACTAAATAAAATAAAAAGAAAAGAAAAATAAGAAAATAGCAAAAAAAAAAGCGGAGCCGTTTTTCTTTCGTCTTCCCTCCGGAGTGTGGCTATAAATTTAGCGTCGATTTGATGATGACGTAGTTAGGGCCACCAGCCTCACCTTTTTTGGGAGGAGGGTCTTCTTTTTTTGTTGCAAAATTCGCTCTATTGATAATAGTATGAATAGAGCGAATTTGCTGCAGAAGGAGGGTAAAAAGTGACGTTTTGAAAATTTTTGTTTGGTGATAAAAAACAAAACATATTTAGGTAGAGATAGAGAGCTAGAGAGGAAGTGAAGAGGCGGTGATAACCGAATTTCTTCTTGTTTTATTTTTTTATTTGGATTTTGATGACAAGCCAATAGGGGATTATCAAGATATTTATTATGGGGAGAGAACAGAATAATATTCTGGAAGTTCCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>502 392 106</canonical_bands>
                <polymorphic_bands>894 106</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATAGATTTTTCCGAATTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CCTAACTACGTCATCATCAAATC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAATAGATTTTTCCGAATTTTTCGCAGTTTCAAAAAATCCGACTATTAGTTCACATGAACTGATTCTAGAATCAAAATTTCAAAGAAGTCACCTCCTCCAAAAGTGAATTTCAAAACTAAATAAAATAAAAAGAAAAGAAAAATAAGAAAATAGCAAAAAAAAAAGCGGAGCCGTTTTTCTTTCGTCTTCCCTCCGGAGTGTGGCTATAAATTTAGCGTCGATTTGATGATGACGTAGTTAGG</canonical_amplicon>
		<polymorphic_amplicon>AAATAGATTTTTCCGAATTTTTCGCAGTTTCAAAAAATCCGACTATTAGTTCACATGAMCTGATTCTAGAATCAAAATTTCAAAGAAGTCACCTCCTCCAAAAGTGAATTTCAAAACTAAATAAAATAAAAAGAAAAGAAAAATAAGAAAATAGCAAAAAAAAAAGCGGAGCCGTTTTTCTTTCGTCTTCCCTCCGGAGTGTGGCTATAAATTTAGCGTCGATTTGATGATGACGTAGTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24277</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>238124</contig_pos>
        <strand></strand>
        <context>aaaagaaaaa[T/G]aagaaaatag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TCCTCCAAAAGTGAATTTCAAAACTAAATAAAATAAAAAGAAAAGAAAAA</left_flank>
        <right_flank>AAGAAAATAGCAAAAAAAAAAGCGGAGCCGTTTTTCTTTCGTCTTCCCTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTCAAAGTTGGATTTTTCAGAATTTATGAAAATTTGTCTTTTCAGGAATTTAGGAATTTTTGGAGTTTTAGATGTTTTGAAAATTATGAACTTTTGAATTTTCATAAATTTTTAGAATTCCTAGAAATTCTTGACTTTCCGGAATTAAATTTGGATTTCTATGAATTTTCAGAATTTTTCGAATTTTTAGAAAATTGAATTTTTTTTGCCAAATGTTATGGAAATTTTGGACTTTTTTTAATTTTAGAACTTAGAATTTTTATGAATTTGAAGAATTTTTGGATTTTTTCAAAACTTTGAAATTTTAAAAACCTTCAAAACCAAACATTAGCATCTCGGAGGGAAATTCAAAAATAGATTTTTCCGAATTTTTCGCAGTTTCAAAAAATCCGACTATTAGTTCACATGAACTGATTCTAGAATCAAAATTTCAAAGAAGTCACCTCCTCCAAAAGTGAATTTCAAAACTAAATAAAATAAAAAGAAAAGAAAAATAAGAAAATAGCAAAAAAAAAAGCGGAGCCGTTTTTCTTTCGTCTTCCCTCCGGAGTGTGGCTATAAATTTAGCGTCGATTTGATGATGACGTAGTTAGGGCCACCAGCCTCACCTTTTTTGGGAGGAGGGTCTTCTTTTTTTGTTGCAAAATTCGCTCTATTGATAATAGTATGAATAGAGCGAATTTGCTGCAGAAGGAGGGTAAAAAGTGACGTTTTGAAAATTTTTGTTTGGTGATAAAAAACAAAACATATTTAGGTAGAGATAGAGAGCTAGAGAGGAAGTGAAGAGGCGGTGATAACCGAATTTCTTCTTGTTTTATTTTTTTATTTGGATTTTGATGACAAGCCAATAGGGGATTATCAAGATATTTATTATGGGGAGAGAACAGAATAATATTCTGGAAGTTCCTTTTTTTTGAATTTTTTCCATTTTATTTCCAGAGTTTGGTGTTCTGAGAAACTTTCTAGAAGTGGAAATTTTCTAAAATATCATTGTT</canonical>
            <polymorphic>ATTTTTTCAAAGTTGGATTTTTCAGAATTTATGAAAATTTGTCTTTTCAGGAATTTAGGAATTTTTGGAGTTTTAGATGTTTTGAAAATTATGAACTTTTGAATTTTCATAAATTTTTAGAATTCCTAGAAATTCTTGACTTTCCGGAATTAAATTTGGATTTCTATGAATTTTCAGAATTTTTCGAATTTTTAGAAAATTGAATTTTTTTTGCCAAATGTTATGGAAATTTTGGACTTTTTTTAATTTTAGAACTTAGAATTTTTATGAATTTGAAGAATTTTTGGATTTTTTCAAAACTTTGAAATTTTAAAAACCTTCAAAACCAAACATTAGCATCTCGGAGGGAAATTCAAAAATAGATTTTTCCGAATTTTTCGCAGTTTCAAAAAATCCGACTATTAGTTCACATGAACTGATTCTAGAATCAAAATTTCAAAGAAGTCACCTCCTCCAAAAGTGAATTTCAAAACTAAATAAAATAAAAAGAAAAGAAAAAKAAGAAAATAGCAAAAAAAAAAGCGGAGCCGTTTTTCTTTCGTCTTCCCTCCGGAGTGTGGCTATAAATTTAGCGTCGATTTGATGATGACGTAGTTAGGGCCACCAGCCTCACCTTTTTTGGGAGGAGGGTCTTCTTTTTTTGTTGCAAAATTCGCTCTATTGATAATAGTATGAATAGAGCGAATTTGCTGCAGAAGGAGGGTAAAAAGTGACGTTTTGAAAATTTTTGTTTGGTGATAAAAAACAAAACATATTTAGGTAGAGATAGAGAGCTAGAGAGGAAGTGAAGAGGCGGTGATAACCGAATTTCTTCTTGTTTTATTTTTTTATTTGGATTTTGATGACAAGCCAATAGGGGATTATCAAGATATTTATTATGGGGAGAGAACAGAATAATATTCTGGAAGTTCCTTTTTTTTGAATTTTTTCCATTTTATTTCCAGAGTTTGGTGTTCTGAGAAACTTTCTAGAAGTGGAAATTTTCTAAAATATCATTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATAGATTTTTCCGAATTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CCTAACTACGTCATCATCAAATC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAATAGATTTTTCCGAATTTTTCGCAGTTTCAAAAAATCCGACTATTAGTTCACATGAACTGATTCTAGAATCAAAATTTCAAAGAAGTCACCTCCTCCAAAAGTGAATTTCAAAACTAAATAAAATAAAAAGAAAAGAAAAATAAGAAAATAGCAAAAAAAAAAGCGGAGCCGTTTTTCTTTCGTCTTCCCTCCGGAGTGTGGCTATAAATTTAGCGTCGATTTGATGATGACGTAGTTAGG</canonical_amplicon>
		<polymorphic_amplicon>AAATAGATTTTTCCGAATTTTTCGCAGTTTCAAAAAATCCGACTATTAGTTCACATGAACTGATTCTAGAATCAAAATTTCAAAGAAGTCACCTCCTCCAAAAGTGAATTTCAAAACTAAATAAAATAAAAAGAAAAGAAAAAKAAGAAAATAGCAAAAAAAAAAGCGGAGCCGTTTTTCTTTCGTCTTCCCTCCGGAGTGTGGCTATAAATTTAGCGTCGATTTGATGATGACGTAGTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24278</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>240318</contig_pos>
        <strand>+</strand>
        <context>GATGTAGGGG[C/G]TTTTTTTCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATAGACAGGATTATAAATTGTGTCTTGCTTTGCGTCAGAAGATGTAGGGG</left_flank>
        <right_flank>TTTTTTTCGGTAGAAGACCGAAATTTTAAAAAATTTGAAATTTTTTACCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTTACTTTGGCGAAGTGTGGCGTCTAGTGTGGCGCAAGATACGCAAACACCGCTACGTCAAAATGCACACTTTGCAAAATTCAAAAATTAATTTCAGCTGGGTGCAAGAAAATCATCGATAAAACGAAATTAAAAGCCAAATTATTTCTGATTTTCAGTTTATAAAAAACCTTTAAAAATTTTTTCAAAATTTTCAGCTAGTCTTTCATCAAAAAAAAGTATTATGCTGTTGATGATAAATGAATTAGGAGGAAGTCAGAAGCGGAAAAAGAGAAAAAGATATTTTTTTGGAAGGAAGAAGACTGAGAGAGGAAAGAGATAAGAATATTATATGGATATTTATCTCTTTTTTTTCGAAAAAAAATAAATCCAAAATGGCATGAATGACACATTGTTTAGGATGGCATGGACTTGGATTTAGATTGAGAACGGAAATTGAAAAAAATAGACAGGATTATAAATTGTGTCTTGCTTTGCGTCAGAAGATGTAGGGGTTTTTTTTCGGTAGAAGACCGAAATTTTAAAAAATTTGAAATTTTTTACCAAAAATATACAATGATTTTCAGGTTTTTTATAGCATTTTGAAAATTTAAGAAAAAACTGACAAAGCAAATTAAATATATATTTTTGGAAAATTCTGGCTTTCTAAGAACTTGTCAAAAAAAAAGAAAATATTATAGAATTTTAGAATTTTTGGATTTTCTGAAACTCTTTACTGATTGGAGTATTCAAAACACACACATTTTCATGGTGAATGCTCTAATCGAAGGAAAAAGTTTTTTTCTTAGAATTTCTCAAATTCAAAAACCAATTGAAGCGTAAAAAGTGCATGTTATTACCTGTAACAACGCGTCTTGAATTGAACATTTCTTCTGAATTTTCTGCTCTTCTGAAGATGTGAAAATTTGAATATCGAGACCCGTTGAAGCTCTGAAAGTTTTGAACTATTGATATATTGAAAAAACTGGGGAGGAAAATAGAATAATTGAAAACAG</canonical>
            <polymorphic>TTTTTTTTACTTTGGCGAAGTGTGGCGTCTAGTGTGGCGCAAGATACGCAAACACCGCTACGTCAAAATGCACACTTTGCAAAATTCAAAAATTAATTTCAGCTGGGTGCAAGAAAATCATCGATAAAACGAAATTAAAAGCCAAATTATTTCTGATTTTCAGTTTATAAAAAACCTTTAAAAATTTTTTCAAAATTTTCAGCTAGTCTTTCATCAAAAAAAAGTATTATGCTGTTGATGATAAATGAATTAGGAGGAAGTCAGAAGCGGAAAAAGAGAAAAAGATATTTTTTTGGAAGGAAGAAGACTGAGAGAGGAAAGAGATAAGAATATTATATGGATATTTATCTCTTTTTTTTCGAAAAAAAATAAATCCAAAATGGCATGAATGACACATTGTTTAGGATGGCATGGACTTGGATTTAGATTGAGAACGGAAATTGAAAAAAATAGACAGGATTATAAATTGTGTCTTGCTTTGCGTCAGAAGATGTAGGGGSTTTTTTTCGGTAGAAGACCGAAATTTTAAAAAATTTGAAATTTTTTACCAAAAATATACAATGATTTTCAGGTTTTTTATAGCATTTTGAAAATTTAAGAAAAAACTGACAAAGCAAATTAAATATATATTTTTGGAAAATTCTGGCTTTCTAAGAACTTGTCAAAAAAAAAGAAAATATTATAGAATTTTAGAATTTTTGGATTTTCTGAAACTCTTTACTGATTGGAGTATTCAAAACACACACATTTTCATGGTGAATGCTCTAATCGAAGGAAAAAGTTTTTTTCTTAGAATTTCTCAAATTCAAAAACCAATTGAAGCGTAAAAAGTGCATGTTATTACCTGTAACAACGCGTCTTGAATTGAACATTTCTTCTGAATTTTCTGCTCTTCTGAAGATGTGAAAATTTGAATATCGAGACCCGTTGAAGCTCTGAAAGTTTTGAACTATTGATATATTGAAAAAACTGGGGAGGAAAATAGAATAATTGAAAACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGACTTGGATTTAGATTGAGAAC</pcr_primer_p1>
		<pcr_primer_p2>ACAAGTTCTTAGAAAGCCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGACTTGGATTTAGATTGAGAACGGAAATTGAAAAAAATAGACAGGATTATAAATTGTGTCTTGCTTTGCGTCAGAAGATGTAGGGGTTTTTTTTCGGTAGAAGACCGAAATTTTAAAAAATTTGAAATTTTTTACCAAAAATATACAATGATTTTCAGGTTTTTTATAGCATTTTGAAAATTTAAGAAAAAACTGACAAAGCAAATTAAATATATATTTTTGGAAAATTCTGGCTTTCTAAGAACTTGT</canonical_amplicon>
		<polymorphic_amplicon>GGACTTGGATTTAGATTGAGAACGGAAATTGAAAAAAATAGACAGGATTATAAATTGTGTCTTGCTTTGCGTCAGAAGATGTAGGGGSTTTTTTTCGGTAGAAGACCGAAATTTTAAAAAATTTGAAATTTTTTACCAAAAATATACAATGATTTTCAGGTTTTTTATAGCATTTTGAAAATTTAAGAAAAAACTGACAAAGCAAATTAAATATATATTTTTGGAAAATTCTGGCTTTCTAAGAACTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24279</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>240662</contig_pos>
        <strand>+</strand>
        <context>CATGTTATTA[C/T]CTGTAACAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTCTCAAATTCAAAAACCAATTGAAGCGTAAAAAGTGCATGTTATTA</left_flank>
        <right_flank>CTGTAACAACGCGTCTTGAATTGAACATTTCTTCTGAATTTTCTGCTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATCTCTTTTTTTTCGAAAAAAAATAAATCCAAAATGGCATGAATGACACATTGTTTAGGATGGCATGGACTTGGATTTAGATTGAGAACGGAAATTGAAAAAAATAGACAGGATTATAAATTGTGTCTTGCTTTGCGTCAGAAGATGTAGGGGTTTTTTTTCGGTAGAAGACCGAAATTTTAAAAAATTTGAAATTTTTTACCAAAAATATACAATGATTTTCAGGTTTTTTATAGCATTTTGAAAATTTAAGAAAAAACTGACAAAGCAAATTAAATATATATTTTTGGAAAATTCTGGCTTTCTAAGAACTTGTCAAAAAAAAAGAAAATATTATAGAATTTTAGAATTTTTGGATTTTCTGAAACTCTTTACTGATTGGAGTATTCAAAACACACACATTTTCATGGTGAATGCTCTAATCGAAGGAAAAAGTTTTTTTCTTAGAATTTCTCAAATTCAAAAACCAATTGAAGCGTAAAAAGTGCATGTTATTACCTGTAACAACGCGTCTTGAATTGAACATTTCTTCTGAATTTTCTGCTCTTCTGAAGATGTGAAAATTTGAATATCGAGACCCGTTGAAGCTCTGAAAGTTTTGAACTATTGATATATTGAAAAAACTGGGGAGGAAAATAGAATAATTGAAAACAGATGAGGCAAAAAAAGCAGGGATTGAAAACGGAACAGACTGGGAAAAACAATAGAAAAGATGAGCAATTTTTATGAACATGTTCAATGGGTGGTTTAGGATTTTAGACGAGTGAAATGGCTTTCAGATGTTGGGGATTTTCTGAGAAATATATATGATCTTTGGGATGAGATTTTGAAAATTTAGAGATTAAAAAAATTAAATTTTTAATTTTTTAAAAGTTTTAGTTTTTCAGCTGACATTTTTCTAATGTTAGTGTTTAAATGATTCGAAAATATGACTTTTAAAGAAATTTTTGACATTTTTTTTTCTGAAATTTTCAACTTTTTGAAAACAAATTCGAGAA</canonical>
            <polymorphic>TTATCTCTTTTTTTTCGAAAAAAAATAAATCCAAAATGGCATGAATGACACATTGTTTAGGATGGCATGGACTTGGATTTAGATTGAGAACGGAAATTGAAAAAAATAGACAGGATTATAAATTGTGTCTTGCTTTGCGTCAGAAGATGTAGGGGTTTTTTTTCGGTAGAAGACCGAAATTTTAAAAAATTTGAAATTTTTTACCAAAAATATACAATGATTTTCAGGTTTTTTATAGCATTTTGAAAATTTAAGAAAAAACTGACAAAGCAAATTAAATATATATTTTTGGAAAATTCTGGCTTTCTAAGAACTTGTCAAAAAAAAAGAAAATATTATAGAATTTTAGAATTTTTGGATTTTCTGAAACTCTTTACTGATTGGAGTATTCAAAACACACACATTTTCATGGTGAATGCTCTAATCGAAGGAAAAAGTTTTTTTCTTAGAATTTCTCAAATTCAAAAACCAATTGAAGCGTAAAAAGTGCATGTTATTAYCTGTAACAACGCGTCTTGAATTGAACATTTCTTCTGAATTTTCTGCTCTTCTGAAGATGTGAAAATTTGAATATCGAGACCCGTTGAAGCTCTGAAAGTTTTGAACTATTGATATATTGAAAAAACTGGGGAGGAAAATAGAATAATTGAAAACAGATGAGGCAAAAAAAGCAGGGATTGAAAACGGAACAGACTGGGAAAAACAATAGAAAAGATGAGCAATTTTTATGAACATGTTCAATGGGTGGTTTAGGATTTTAGACGAGTGAAATGGCTTTCAGATGTTGGGGATTTTCTGAGAAATATATATGATCTTTGGGATGAGATTTTGAAAATTTAGAGATTAAAAAAATTAAATTTTTAATTTTTTAAAAGTTTTAGTTTTTCAGCTGACATTTTTCTAATGTTAGTGTTTAAATGATTCGAAAATATGACTTTTAAAGAAATTTTTGACATTTTTTTTTCTGAAATTTTCAACTTTTTGAAAACAAATTCGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCTAATCGAAGGAAAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>CCTCATCTGTTTTCAATTATTCT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GCTCTAATCGAAGGAAAAAGTTTTTTTCTTAGAATTTCTCAAATTCAAAAACCAATTGAAGCGTAAAAAGTGCATGTTATTACCTGTAACAACGCGTCTTGAATTGAACATTTCTTCTGAATTTTCTGCTCTTCTGAAGATGTGAAAATTTGAATATCGAGACCCGTTGAAGCTCTGAAAGTTTTGAACTATTGATATATTGAAAAAACTGGGGAGGAAAATAGAATAATTGAAAACAGATGAGG</canonical_amplicon>
		<polymorphic_amplicon>GCTCTAATCGAAGGAAAAAGTTTTTTTCTTAGAATTTCTCAAATTCAAAAACCAATTGAAGCGTAAAAAGTGCATGTTATTAYCTGTAACAACGCGTCTTGAATTGAACATTTCTTCTGAATTTTCTGCTCTTCTGAAGATGTGAAAATTTGAATATCGAGACCCGTTGAAGCTCTGAAAGTTTTGAACTATTGATATATTGAAAAAACTGGGGAGGAAAATAGAATAATTGAAAACAGATGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24280</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>252415</contig_pos>
        <strand>+</strand>
        <context>CGTCTCGGTC[A/G]AAAAAAAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATCTTCAAAACCGATTCTAAGTGATGCGAATCATCTCTCGTCTCGGTC</left_flank>
        <right_flank>AAAAAAAGAATTTTCGTACAGCGAACGGAAAACCAGACGACGTAAAAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGGAACAGAGAGGTTAGAGGGAGAAAAGAGAGGAAGAGAATCTGCTGGATAGTATCAATTCGTTATGAGTCATTTTTTGAGGATTTTATGGGGAAGTGGAAATGCTATTTGGTGATTAAACATCTCGAGGACAAGCTAGGCTGGCACACATCTGCCTTATTTTCTTATAACTTCTGAACAATTTCTTTTTTTTATTTGGAAGGAAACGGACTAGCCCGAAGAGCTGTTTGGTCCCTACAATATTTTTATTGTTGCCAGCCATTTTTGAAGACGCCCGGATGGTCCCGCTACGCGTCACACGTCAAGACGGAAGTACAATTCTGCAAGACCACCCTTGGCTAATAAAAACGATTTAGATGAACTTTTACAACTTCGCGCCTGTCTCTTTATTTCGCGCCCAAACGTCAACAATGCCTCAGCGCTCAGGTCAAGAGCTATCCGTGGTCGCAATCTTCAAAACCGATTCTAAGTGATGCGAATCATCTCTCGTCTCGGTCAAAAAAAAGAATTTTCGTACAGCGAACGGAAAACCAGACGACGTAAAAATGCATTCGTCATGCGTTAAATCCATCGAGAATCAAGAAGTTCTAGCTGGTTTTTCTAGGCAACTTTGCTTCAAGACACACGAATTGCTTCAATTCAGTACCGTTGGCGCAAACGACTCAAGCGTCGAGTTGACGATGGCGATGGTACGAAGACCGGTGAACGGCAACGCGTCGATCTTCACATCCTTTCCGTTGGAAATGTGCAACTCGTCGATTCGATTCGTTCCGATACTCTGAGCTATCGATCGAACATCGACTCCGTCACACTCCAGCACTATCAGATTTTTTGAGACCTAAAAAATTGGAAATTTCAAATTGTAAAGCTTTTGACACACTCACTTTACAAGTACATTTTTCTGGGGTTCGTGGACAAGTGACATCGGCAAATGTTGATGTGAGGAGGTGGGCAAGCACGACGAATGCGTGAATGAGCATCCACCTCATTCTGTTCCT</canonical>
            <polymorphic>CTGGGAACAGAGAGGTTAGAGGGAGAAAAGAGAGGAAGAGAATCTGCTGGATAGTATCAATTCGTTATGAGTCATTTTTTGAGGATTTTATGGGGAAGTGGAAATGCTATTTGGTGATTAAACATCTCGAGGACAAGCTAGGCTGGCACACATCTGCCTTATTTTCTTATAACTTCTGAACAATTTCTTTTTTTTATTTGGAAGGAAACGGACTAGCCCGAAGAGCTGTTTGGTCCCTACAATATTTTTATTGTTGCCAGCCATTTTTGAAGACGCCCGGATGGTCCCGCTACGCGTCACACGTCAAGACGGAAGTACAATTCTGCAAGACCACCCTTGGCTAATAAAAACGATTTAGATGAACTTTTACAACTTCGCGCCTGTCTCTTTATTTCGCGCCCAAACGTCAACAATGCCTCAGCGCTCAGGTCAAGAGCTATCCGTGGTCGCAATCTTCAAAACCGATTCTAAGTGATGCGAATCATCTCTCGTCTCGGTCRAAAAAAAGAATTTTCGTACAGCGAACGGAAAACCAGACGACGTAAAAATGCATTCGTCATGCGTTAAATCCATCGAGAATCAAGAAGTTCTAGCTGGTTTTTCTAGGCAACTTTGCTTCAAGACACACGAATTGCTTCAATTCAGTACCGTTGGCGCAAACGACTCAAGCGTCGAGTTGACGATGGCGATGGTACGAAGACCGGTGAACGGCAACGCGTCGATCTTCACATCCTTTCCGTTGGAAATGTGCAACTCGTCGATTCGATTCGTTCCGATACTCTGAGCTATCGATCGAACATCGACTCCGTCACACTCCAGCACTATCAGATTTTTTGAGACCTAAAAAATTGGAAATTTCAAATTGTAAAGCTTTTGACACACTCACTTTACAAGTACATTTTTCTGGGGTTCGTGGACAAGTGACATCGGCAAATGTTGATGTGAGGAGGTGGGCAAGCACGACGAATGCGTGAATGAGCATCCACCTCATTCTGTTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGGCTAATAAAAACGATTTAG</pcr_primer_p1>
		<pcr_primer_p2>CTTGATTCTCGATGGATTTAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTGGCTAATAAAAACGATTTAGATGAACTTTTACAACTTCGCGCCTGTCTCTTTATTTCGCGCCCAAACGTCAACAATGCCTCAGCGCTCAGGTCAAGAGCTATCCGTGGTCGCAATCTTCAAAACCGATTCTAAGTGATGCGAATCATCTCTCGTCTCGGTCAAAAAAAAGAATTTTCGTACAGCGAACGGAAAACCAGACGACGTAAAAATGCATTCGTCATGCGTTAAATCCATCGAGAATCAAG</canonical_amplicon>
		<polymorphic_amplicon>CTTGGCTAATAAAAACGATTTAGATGAACTTTTACAACTTCGCGCCTGTCTCTTTATTTCGCGCCCAAACGTCAACAATGCCTCAGCGCTCAGGTCAAGAGCTATCCGTGGTCGCAATCTTCAAAACCGATTCTAAGTGATGCGAATCATCTCTCGTCTCGGTCRAAAAAAAGAATTTTCGTACAGCGAACGGAAAACCAGACGACGTAAAAATGCATTCGTCATGCGTTAAATCCATCGAGAATCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24281</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>254438</contig_pos>
        <strand></strand>
        <context>CGAAAAATTC[A/G]AAAATCCCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTGGATGTTTCAAAATTTTCCAAATCTTAGAAAAATCCGAAAAATTC</left_flank>
        <right_flank>AAAATCCCATTTTTCAAAATGATTAAACCCCCGAAAATTCCGAAAATCCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCCGGCGAAACACACACACATTCCTCTCTGCTTCTCTCTTTCACTTCTCTACAGTTTCGTAAATCTCCCAGAGTGGGCGGAGTCGGGTCAGCAGGTCGAAAAGCGGAGATTCCCTCTCTCTTTCTCTTCTTCCCGAAAGAAGAGGGAGAAGAAGGTGTCCAGTAACAGCAGAAGAACAGATAAAGAAGTGAAATTATCGGGGACAAGGGCGTCGTCTTCATCTGAATACAGCTGTCACATCATCGTGTCTTGTTTTGACTCCGCCGGCGGACGTCTCCAATTTCTCATTATGCAATTTCCTGTTGTTTTTTATTGGAATTAGAAATTTGCGAAATTTCAAGGGTCATTGCATAATTAAAATTCCTTCCGGGGAGATTGTTCTAGTGCAAAGATTGCATTTTTCGGTTTTTTTAAGAGAAAAAATCGAATGTTTAAAAACTGAAAATTTTTTTTGGATGTTTCAAAATTTTCCAAATCTTAGAAAAATCCGAAAAATTCAAAAATCCCATTTTTCAAAATGATTAAACCCCCGAAAATTCCGAAAATCCAAAATCTTCAAAATTCCGAAGATTCTAAAATTCTAAAACTCTGAAAATCCGAAATTTCTAAAATCCCAAAATCCCAAATTCCTAAATTTCCCTAAAAAAATTTCAACTTTTTCAAAAATGGGAAATTTCCAGAATTCCAAAAACCCAAAAAAATCTGAAATTCCGAAAAAATCCTGAAATTTCAAAGTTTTCGAAAAACCCGAAAGTTCAAACTTTTCAGAATTCTAAAATTCCAAAAATCCGAAAATTCCAAAATTCTAAATTTCCAGAATCCCAAAAAACCAAGAAACCGAAAATTCCAAAAATTTCCAAAATTCAAAAAATTCAAAAAACCGAAATTCTAGGAATCCGAAAAGTCCGAAAATTCTAAAAATTCCGATATCCTAAACTTTCAAAAAATTCGAGAACTTCAATTTTTCGATAACTCCAAAAATTCCGAATACTAAATTTC</canonical>
            <polymorphic>CGCCGGCGAAACACACACACATTCCTCTCTGCTTCTCTCTTTCACTTCTCTACAGTTTCGTAAATCTCCCAGAGTGGGCGGAGTCGGGTCAGCAGGTCGAAAAGCGGAGATTCCCTCTCTCTTTCTCTTCTTCCCGAAAGAAGAGGGAGAAGAAGGTGTCCAGTAACAGCAGAAGAACAGATAAAGAAGTGAAATTATCGGGGACAAGGGCGTCGTCTTCATCTGAATACAGCTGTCACATCATCGTGTCTTGTTTTGACTCCGCCGGCGGACGTCTCCAATTTCTCATTATGCAATTTCCTGTTGTTTTTTATTGGAATTAGAAATTTGCGAAATTTCAAGGGTCATTGCATAATTAAAATTCCTTCCGGGGAGATTGTTCTAGTGCAAAGATTGCATTTTTCGGTTTTTTTAAGAGAAAAAATCGAATGTTTAAAAACTGAAAATTTTTTTTGGATGTTTCAAAATTTTCCAAATCTTAGAAAAATCCGAAAAATTCRAAAATCCCATTTTTCAAAATGATTAAACCCCCGAAAATTCCGAAAATCCAAAATCTTCAAAATTCCGAAGATTCTAAAATTCTAAAACTCTGAAAATCCGAAATTTCTAAAATCCCAAAATCCCAAATTCCTAAATTTCCCTAAAAAAATTTCAACTTTTTCAAAAATGGGAAATTTCCAGAATTCCAAAAACCCAAAAAAATCTGAAATTCCGAAAAAATCCTGAAATTTCAAAGTTTTCGAAAAACCCGAAAGTTCAAACTTTTCAGAATTCTAAAATTCCAAAAATCCGAAAATTCCAAAATTCTAAATTTCCAGAATCCCAAAAAACCAAGAAACCGAAAATTCCAAAAATTTCCAAAATTCAAAAAATTCAAAAAACCGAAATTCTAGGAATCCGAAAAGTCCGAAAATTCTAAAAATTCCGATATCCTAAACTTTCAAAAAATTCGAGAACTTCAATTTTTCGATAACTCCAAAAATTCCGAATACTAAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGAATGTTTAAAAACTGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GGAGTTATCGAAAAATTGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>553</pcr_amplicon_size>
		<canonical_amplicon>TCGAATGTTTAAAAACTGAAAATTTTTTTTGGATGTTTCAAAATTTTCCAAATCTTAGAAAAATCCGAAAAATTCAAAAATCCCATTTTTCAAAATGATTAAACCCCCGAAAATTCCGAAAATCCAAAATCTTCAAAATTCCGAAGATTCTAAAATTCTAAAACTCTGAAAATCCGAAATTTCTAAAATCCCAAAATCCCAAATTCCTAAATTTCCCTAAAAAAATTTCAACTTTTTCAAAAATGGGAAATTTCCAGAATTCCAAAAACCCAAAAAAATCTGAAATTCCGAAAAAATCCTGAAATTTCAAAGTTTTCGAAAAACCCGAAAGTTCAAACTTTTCAGAATTCTAAAATTCCAAAAATCCGAAAATTCCAAAATTCTAAATTTCCAGAATCCCAAAAAACCAAGAAACCGAAAATTCCAAAAATTTCCAAAATTCAAAAAATTCAAAAAACCGAAATTCTAGGAATCCGAAAAGTCCGAAAATTCTAAAAATTCCGATATCCTAAACTTTCAAAAAATTCGAGAACTTCAATTTTTCGATAACTCC</canonical_amplicon>
		<polymorphic_amplicon>TCGAATGTTTAAAAACTGAAAATTTTTTTTGGATGTTTCAAAATTTTCCAAATCTTAGAAAAATCCGAAAAATTCRAAAATCCCATTTTTCAAAATGATTAAACCCCCGAAAATTCCGAAAATCCAAAATCTTCAAAATTCCGAAGATTCTAAAATTCTAAAACTCTGAAAATCCGAAATTTCTAAAATCCCAAAATCCCAAATTCCTAAATTTCCCTAAAAAAATTTCAACTTTTTCAAAAATGGGAAATTTCCAGAATTCCAAAAACCCAAAAAAATCTGAAATTCCGAAAAAATCCTGAAATTTCAAAGTTTTCGAAAAACCCGAAAGTTCAAACTTTTCAGAATTCTAAAATTCCAAAAATCCGAAAATTCCAAAATTCTAAATTTCCAGAATCCCAAAAAACCAAGAAACCGAAAATTCCAAAAATTTCCAAAATTCAAAAAATTCAAAAAACCGAAATTCTAGGAATCCGAAAAGTCCGAAAATTCTAAAAATTCCGATATCCTAAACTTTCAAAAAATTCGAGAACTTCAATTTTTCGATAACTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24282</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>256203</contig_pos>
        <strand>+</strand>
        <context>AAGCTTCTTG[C/T]TTTTTGTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAGTGATAAAATTTCAAAATTTTGGATTTTCAGATTCTCAAGCTTCTTG</left_flank>
        <right_flank>TTTTTGTTTTTAAGGTTTTTCAAATTCCATCAGTATTGCTAACGGTTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTGTGACACACGTGGAATGGCAATTTTCGACTGGTGCAAATCCCTGAACCATCTCTTCCAAATCACACAAACGATCGAATTTTGGTACTCTGAAATTTGAAGAAATGTTGAATTACCGTAAAACCTGTAATAGAAGGGCCTTTTAACTTTTGACTTTGATGCAATTTATCTTGGTTCCTGTCAAATATTTTTTTGAATTGTCAACTGATAAATTGCTTATCAGAATATAAAAATATATTATCAGTTTACACATTTTTGATATCTCTGACAGCAATGCAGATAAATTGGCTGATACTTGTAAGGGTGGAGCACCTCTATTACAGATTTTAAGGTATGAAATTTTCAAAAAAATTGAAATACCTGACTTTCCGGGATAGCGAAGCATCCTTGTCGAACAGGACCCGATATTCGAAGGAAGCACAGGAGTAGCATCTGAAAATGTGCTCCAGTGATAAAATTTCAAAATTTTGGATTTTCAGATTCTCAAGCTTCTTGTTTTTTGTTTTTAAGGTTTTTCAAATTCCATCAGTATTGCTAACGGTTTCTGGAATTAGACTTGTTAGATTTTCAAAATTTTTAATTTTTGAAATTCGAAATTTTAGATATTCAGAATCAGAATTCCATGATTTTAAAAATTAGAAACTTCAGAATTTAGAAATTCGGAACTTTTGAATATTTCGATATATTTTTTTTCCAGATTTTCAGCACTTCAGAACCTGAAAATTTCTTAATTCCAGAGTTTAAAATTTTCAGTTTTATAGAATTTCAGAAATTCAGAAATTTTGAAATTTTGAATATTTCAAATGTTGCACTTTCGAATTTTCGAATTTTCTGGTTTTCTGGATTTCCGAAATTCTGAACTTTTTAGTTTCTAAATTTCAATAACTCAAAATTCCGGATACACGGACTTTCATTTCAGAATTTCAAAATTTCAGAATTTCCGAATTTTTGAATTTTTGATTTTCTGAATTTTCAGAATTTCATAGATTCAGAATT</canonical>
            <polymorphic>AAAATTGTGACACACGTGGAATGGCAATTTTCGACTGGTGCAAATCCCTGAACCATCTCTTCCAAATCACACAAACGATCGAATTTTGGTACTCTGAAATTTGAAGAAATGTTGAATTACCGTAAAACCTGTAATAGAAGGGCCTTTTAACTTTTGACTTTGATGCAATTTATCTTGGTTCCTGTCAAATATTTTTTTGAATTGTCAACTGATAAATTGCTTATCAGAATATAAAAATATATTATCAGTTTACACATTTTTGATATCTCTGACAGCAATGCAGATAAATTGGCTGATACTTGTAAGGGTGGAGCACCTCTATTACAGATTTTAAGGTATGAAATTTTCAAAAAAATTGAAATACCTGACTTTCCGGGATAGCGAAGCATCCTTGTCGAACAGGACCCGATATTCGAAGGAAGCACAGGAGTAGCATCTGAAAATGTGCTCCAGTGATAAAATTTCAAAATTTTGGATTTTCAGATTCTCAAGCTTCTTGYTTTTTGTTTTTAAGGTTTTTCAAATTCCATCAGTATTGCTAACGGTTTCTGGAATTAGACTTGTTAGATTTTCAAAATTTTTAATTTTTGAAATTCGAAATTTTAGATATTCAGAATCAGAATTCCATGATTTTAAAAATTAGAAACTTCAGAATTTAGAAATTCGGAACTTTTGAATATTTCGATATATTTTTTTTCCAGATTTTCAGCACTTCAGAACCTGAAAATTTCTTAATTCCAGAGTTTAAAATTTTCAGTTTTATAGAATTTCAGAAATTCAGAAATTTTGAAATTTTGAATATTTCAAATGTTGCACTTTCGAATTTTCGAATTTTCTGGTTTTCTGGATTTCCGAAATTCTGAACTTTTTAGTTTCTAAATTTCAATAACTCAAAATTCCGGATACACGGACTTTCATTTCAGAATTTCAAAATTTCAGAATTTCCGAATTTTTGAATTTTTGATTTTCTGAATTTTCAGAATTTCATAGATTCAGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATATTCGAAGGAAGCACAG</pcr_primer_p1>
		<pcr_primer_p2>AGTCTAATTCCAGAAACCGTTAG</pcr_primer_p2>
		<pcr_amplicon_size>154</pcr_amplicon_size>
		<canonical_amplicon>GATATTCGAAGGAAGCACAGGAGTAGCATCTGAAAATGTGCTCCAGTGATAAAATTTCAAAATTTTGGATTTTCAGATTCTCAAGCTTCTTGTTTTTTGTTTTTAAGGTTTTTCAAATTCCATCAGTATTGCTAACGGTTTCTGGAATTAGACT</canonical_amplicon>
		<polymorphic_amplicon>GATATTCGAAGGAAGCACAGGAGTAGCATCTGAAAATGTGCTCCAGTGATAAAATTTCAAAATTTTGGATTTTCAGATTCTCAAGCTTCTTGYTTTTTGTTTTTAAGGTTTTTCAAATTCCATCAGTATTGCTAACGGTTTCTGGAATTAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24283</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>256230</contig_pos>
        <strand></strand>
        <context>TTTTCAAATT[C/T]CATCAGTATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCAGATTCTCAAGCTTCTTGTTTTTTGTTTTTAAGGTTTTTCAAATT</left_flank>
        <right_flank>CATCAGTATTGCTAACGGTTTCTGGAATTAGACTTGTTAGATTTTCAAAA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCGACTGGTGCAAATCCCTGAACCATCTCTTCCAAATCACACAAACGATCGAATTTTGGTACTCTGAAATTTGAAGAAATGTTGAATTACCGTAAAACCTGTAATAGAAGGGCCTTTTAACTTTTGACTTTGATGCAATTTATCTTGGTTCCTGTCAAATATTTTTTTGAATTGTCAACTGATAAATTGCTTATCAGAATATAAAAATATATTATCAGTTTACACATTTTTGATATCTCTGACAGCAATGCAGATAAATTGGCTGATACTTGTAAGGGTGGAGCACCTCTATTACAGATTTTAAGGTATGAAATTTTCAAAAAAATTGAAATACCTGACTTTCCGGGATAGCGAAGCATCCTTGTCGAACAGGACCCGATATTCGAAGGAAGCACAGGAGTAGCATCTGAAAATGTGCTCCAGTGATAAAATTTCAAAATTTTGGATTTTCAGATTCTCAAGCTTCTTGTTTTTTGTTTTTAAGGTTTTTCAAATTCCATCAGTATTGCTAACGGTTTCTGGAATTAGACTTGTTAGATTTTCAAAATTTTTAATTTTTGAAATTCGAAATTTTAGATATTCAGAATCAGAATTCCATGATTTTAAAAATTAGAAACTTCAGAATTTAGAAATTCGGAACTTTTGAATATTTCGATATATTTTTTTTCCAGATTTTCAGCACTTCAGAACCTGAAAATTTCTTAATTCCAGAGTTTAAAATTTTCAGTTTTATAGAATTTCAGAAATTCAGAAATTTTGAAATTTTGAATATTTCAAATGTTGCACTTTCGAATTTTCGAATTTTCTGGTTTTCTGGATTTCCGAAATTCTGAACTTTTTAGTTTCTAAATTTCAATAACTCAAAATTCCGGATACACGGACTTTCATTTCAGAATTTCAAAATTTCAGAATTTCCGAATTTTTGAATTTTTGATTTTCTGAATTTTCAGAATTTCATAGATTCAGAATTCAAAATTTTCGAATTTCAAAATTTCAA</canonical>
            <polymorphic>TTTTCGACTGGTGCAAATCCCTGAACCATCTCTTCCAAATCACACAAACGATCGAATTTTGGTACTCTGAAATTTGAAGAAATGTTGAATTACCGTAAAACCTGTAATAGAAGGGCCTTTTAACTTTTGACTTTGATGCAATTTATCTTGGTTCCTGTCAAATATTTTTTTGAATTGTCAACTGATAAATTGCTTATCAGAATATAAAAATATATTATCAGTTTACACATTTTTGATATCTCTGACAGCAATGCAGATAAATTGGCTGATACTTGTAAGGGTGGAGCACCTCTATTACAGATTTTAAGGTATGAAATTTTCAAAAAAATTGAAATACCTGACTTTCCGGGATAGCGAAGCATCCTTGTCGAACAGGACCCGATATTCGAAGGAAGCACAGGAGTAGCATCTGAAAATGTGCTCCAGTGATAAAATTTCAAAATTTTGGATTTTCAGATTCTCAAGCTTCTTGTTTTTTGTTTTTAAGGTTTTTCAAATTYCATCAGTATTGCTAACGGTTTCTGGAATTAGACTTGTTAGATTTTCAAAATTTTTAATTTTTGAAATTCGAAATTTTAGATATTCAGAATCAGAATTCCATGATTTTAAAAATTAGAAACTTCAGAATTTAGAAATTCGGAACTTTTGAATATTTCGATATATTTTTTTTCCAGATTTTCAGCACTTCAGAACCTGAAAATTTCTTAATTCCAGAGTTTAAAATTTTCAGTTTTATAGAATTTCAGAAATTCAGAAATTTTGAAATTTTGAATATTTCAAATGTTGCACTTTCGAATTTTCGAATTTTCTGGTTTTCTGGATTTCCGAAATTCTGAACTTTTTAGTTTCTAAATTTCAATAACTCAAAATTCCGGATACACGGACTTTCATTTCAGAATTTCAAAATTTCAGAATTTCCGAATTTTTGAATTTTTGATTTTCTGAATTTTCAGAATTTCATAGATTCAGAATTCAAAATTTTCGAATTTCAAAATTTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>244 118 65 55 54 53 32 31 29 26 23 23 22 17 16 16 16 16 16 9 9 8 8 8 8 8 8 8 8 8 8 8 8 7 7</canonical_bands>
                <polymorphic_bands>244 118 108 65 54 32 31 29 26 23 23 22 17 16 16 16 16 16 9 9 8 8 8 8 8 8 8 8 8 8 8 8 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTTTGGATTTTCAGATTCTC</pcr_primer_p1>
		<pcr_primer_p2>CTTTGAAAAGCGTTTTCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>907</pcr_amplicon_size>
		<canonical_amplicon>AAATTTTGGATTTTCAGATTCTCAAGCTTCTTGTTTTTTGTTTTTAAGGTTTTTCAAATTCCATCAGTATTGCTAACGGTT</canonical_amplicon>
		<polymorphic_amplicon>AAATTTTGGATTTTCAGATTCTCAAGCTTCTTGTTTTTTGTTTTTAAGGTTTTTCAAATTYCATCAGTATTGCTAACGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24284</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>256265</contig_pos>
        <strand>+</strand>
        <context>GAATTAGACT[C/T]GTTAGATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGGTTTTTCAAATTCCATCAGTATTGCTAACGGTTTCTGGAATTAGACT</left_flank>
        <right_flank>GTTAGATTTTCAAAATTTTTAATTTTTGAAATTCGAAATTTTAGATATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATCACACAAACGATCGAATTTTGGTACTCTGAAATTTGAAGAAATGTTGAATTACCGTAAAACCTGTAATAGAAGGGCCTTTTAACTTTTGACTTTGATGCAATTTATCTTGGTTCCTGTCAAATATTTTTTTGAATTGTCAACTGATAAATTGCTTATCAGAATATAAAAATATATTATCAGTTTACACATTTTTGATATCTCTGACAGCAATGCAGATAAATTGGCTGATACTTGTAAGGGTGGAGCACCTCTATTACAGATTTTAAGGTATGAAATTTTCAAAAAAATTGAAATACCTGACTTTCCGGGATAGCGAAGCATCCTTGTCGAACAGGACCCGATATTCGAAGGAAGCACAGGAGTAGCATCTGAAAATGTGCTCCAGTGATAAAATTTCAAAATTTTGGATTTTCAGATTCTCAAGCTTCTTGTTTTTTGTTTTTAAGGTTTTTCAAATTCCATCAGTATTGCTAACGGTTTCTGGAATTAGACTTGTTAGATTTTCAAAATTTTTAATTTTTGAAATTCGAAATTTTAGATATTCAGAATCAGAATTCCATGATTTTAAAAATTAGAAACTTCAGAATTTAGAAATTCGGAACTTTTGAATATTTCGATATATTTTTTTTCCAGATTTTCAGCACTTCAGAACCTGAAAATTTCTTAATTCCAGAGTTTAAAATTTTCAGTTTTATAGAATTTCAGAAATTCAGAAATTTTGAAATTTTGAATATTTCAAATGTTGCACTTTCGAATTTTCGAATTTTCTGGTTTTCTGGATTTCCGAAATTCTGAACTTTTTAGTTTCTAAATTTCAATAACTCAAAATTCCGGATACACGGACTTTCATTTCAGAATTTCAAAATTTCAGAATTTCCGAATTTTTGAATTTTTGATTTTCTGAATTTTCAGAATTTCATAGATTCAGAATTCAAAATTTTCGAATTTCAAAATTTCAAAAATTCAGAATTTCAGAGTTTTAGAATTTCAGGAT</canonical>
            <polymorphic>CAAATCACACAAACGATCGAATTTTGGTACTCTGAAATTTGAAGAAATGTTGAATTACCGTAAAACCTGTAATAGAAGGGCCTTTTAACTTTTGACTTTGATGCAATTTATCTTGGTTCCTGTCAAATATTTTTTTGAATTGTCAACTGATAAATTGCTTATCAGAATATAAAAATATATTATCAGTTTACACATTTTTGATATCTCTGACAGCAATGCAGATAAATTGGCTGATACTTGTAAGGGTGGAGCACCTCTATTACAGATTTTAAGGTATGAAATTTTCAAAAAAATTGAAATACCTGACTTTCCGGGATAGCGAAGCATCCTTGTCGAACAGGACCCGATATTCGAAGGAAGCACAGGAGTAGCATCTGAAAATGTGCTCCAGTGATAAAATTTCAAAATTTTGGATTTTCAGATTCTCAAGCTTCTTGTTTTTTGTTTTTAAGGTTTTTCAAATTCCATCAGTATTGCTAACGGTTTCTGGAATTAGACTYGTTAGATTTTCAAAATTTTTAATTTTTGAAATTCGAAATTTTAGATATTCAGAATCAGAATTCCATGATTTTAAAAATTAGAAACTTCAGAATTTAGAAATTCGGAACTTTTGAATATTTCGATATATTTTTTTTCCAGATTTTCAGCACTTCAGAACCTGAAAATTTCTTAATTCCAGAGTTTAAAATTTTCAGTTTTATAGAATTTCAGAAATTCAGAAATTTTGAAATTTTGAATATTTCAAATGTTGCACTTTCGAATTTTCGAATTTTCTGGTTTTCTGGATTTCCGAAATTCTGAACTTTTTAGTTTCTAAATTTCAATAACTCAAAATTCCGGATACACGGACTTTCATTTCAGAATTTCAAAATTTCAGAATTTCCGAATTTTTGAATTTTTGATTTTCTGAATTTTCAGAATTTCATAGATTCAGAATTCAAAATTTTCGAATTTCAAAATTTCAAAAATTCAGAATTTCAGAGTTTTAGAATTTCAGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCAGATTCTCAAGCTTCTT</pcr_primer_p1>
		<pcr_primer_p2>CTTTGAAAAGCGTTTTCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>898</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCAGATTCTCAAGCTTCTTGTTTTTTGTTTTTAAGGTTTTTCAAATTCCATCAGTATTGCTAACGGTTTCTGGAATTAGACTTGTTAGATTTTCAAAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCAGATTCTCAAGCTTCTTGTTTTTTGTTTTTAAGGTTTTTCAAATTCCATCAGTATTGCTAACGGTTTCTGGAATTAGACTYGTTAGATTTTCAAAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24285</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>256347</contig_pos>
        <strand></strand>
        <context>taaaaattag[A/G]aacttcagaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGAAATTTTAGATATTCAGAATCAGAATTCCATGATTTTAAAAATTAG</left_flank>
        <right_flank>AACTTCAGAATTTAGAAATTCGGAACTTTTGAATATTTCGATATATTTTT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTAACTTTTGACTTTGATGCAATTTATCTTGGTTCCTGTCAAATATTTTTTTGAATTGTCAACTGATAAATTGCTTATCAGAATATAAAAATATATTATCAGTTTACACATTTTTGATATCTCTGACAGCAATGCAGATAAATTGGCTGATACTTGTAAGGGTGGAGCACCTCTATTACAGATTTTAAGGTATGAAATTTTCAAAAAAATTGAAATACCTGACTTTCCGGGATAGCGAAGCATCCTTGTCGAACAGGACCCGATATTCGAAGGAAGCACAGGAGTAGCATCTGAAAATGTGCTCCAGTGATAAAATTTCAAAATTTTGGATTTTCAGATTCTCAAGCTTCTTGTTTTTTGTTTTTAAGGTTTTTCAAATTCCATCAGTATTGCTAACGGTTTCTGGAATTAGACTTGTTAGATTTTCAAAATTTTTAATTTTTGAAATTCGAAATTTTAGATATTCAGAATCAGAATTCCATGATTTTAAAAATTAGAAACTTCAGAATTTAGAAATTCGGAACTTTTGAATATTTCGATATATTTTTTTTCCAGATTTTCAGCACTTCAGAACCTGAAAATTTCTTAATTCCAGAGTTTAAAATTTTCAGTTTTATAGAATTTCAGAAATTCAGAAATTTTGAAATTTTGAATATTTCAAATGTTGCACTTTCGAATTTTCGAATTTTCTGGTTTTCTGGATTTCCGAAATTCTGAACTTTTTAGTTTCTAAATTTCAATAACTCAAAATTCCGGATACACGGACTTTCATTTCAGAATTTCAAAATTTCAGAATTTCCGAATTTTTGAATTTTTGATTTTCTGAATTTTCAGAATTTCATAGATTCAGAATTCAAAATTTTCGAATTTCAAAATTTCAAAAATTCAGAATTTCAGAGTTTTAGAATTTCAGGATTTCAATTTTTTTTTGAATTTTCAGAATTTTTGAACATTGAAATTTCAAGATTTCGGGATTTCAGAATTTCAAAATGTTGTTA</canonical>
            <polymorphic>TTTTAACTTTTGACTTTGATGCAATTTATCTTGGTTCCTGTCAAATATTTTTTTGAATTGTCAACTGATAAATTGCTTATCAGAATATAAAAATATATTATCAGTTTACACATTTTTGATATCTCTGACAGCAATGCAGATAAATTGGCTGATACTTGTAAGGGTGGAGCACCTCTATTACAGATTTTAAGGTATGAAATTTTCAAAAAAATTGAAATACCTGACTTTCCGGGATAGCGAAGCATCCTTGTCGAACAGGACCCGATATTCGAAGGAAGCACAGGAGTAGCATCTGAAAATGTGCTCCAGTGATAAAATTTCAAAATTTTGGATTTTCAGATTCTCAAGCTTCTTGTTTTTTGTTTTTAAGGTTTTTCAAATTCCATCAGTATTGCTAACGGTTTCTGGAATTAGACTTGTTAGATTTTCAAAATTTTTAATTTTTGAAATTCGAAATTTTAGATATTCAGAATCAGAATTCCATGATTTTAAAAATTAGRAACTTCAGAATTTAGAAATTCGGAACTTTTGAATATTTCGATATATTTTTTTTCCAGATTTTCAGCACTTCAGAACCTGAAAATTTCTTAATTCCAGAGTTTAAAATTTTCAGTTTTATAGAATTTCAGAAATTCAGAAATTTTGAAATTTTGAATATTTCAAATGTTGCACTTTCGAATTTTCGAATTTTCTGGTTTTCTGGATTTCCGAAATTCTGAACTTTTTAGTTTCTAAATTTCAATAACTCAAAATTCCGGATACACGGACTTTCATTTCAGAATTTCAAAATTTCAGAATTTCCGAATTTTTGAATTTTTGATTTTCTGAATTTTCAGAATTTCATAGATTCAGAATTCAAAATTTTCGAATTTCAAAATTTCAAAAATTCAGAATTTCAGAGTTTTAGAATTTCAGGATTTCAATTTTTTTTTGAATTTTCAGAATTTTTGAACATTGAAATTTCAAGATTTCGGGATTTCAGAATTTCAAAATGTTGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAACGGTTTCTGGAATTAGACT</pcr_primer_p1>
		<pcr_primer_p2>CTTTGAAAAGCGTTTTCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>835</pcr_amplicon_size>
		<canonical_amplicon>CTAACGGTTTCTGGAATTAGACTTGTTAGATTTTCAAAATTTTTAATTTTTGAAATTCGAAATTTTAGATATTCAGAATCAGAATTCCATGATTTTAAAAATTAGAAACTTCAGAATTTAGAAATT</canonical_amplicon>
		<polymorphic_amplicon>CTAACGGTTTCTGGAATTAGACTTGTTAGATTTTCAAAATTTTTAATTTTTGAAATTCGAAATTTTAGATATTCAGAATCAGAATTCCATGATTTTAAAAATTAGRAACTTCAGAATTTAGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24286</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>256426</contig_pos>
        <strand></strand>
        <context>ttcagaacct[G/C]aaaatttctt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TTGAATATTTCGATATATTTTTTTTCCAGATTTTCAGCACTTCAGAACCT</left_flank>
        <right_flank>AAAATTTCTTAATTCCAGAGTTTAAAATTTTCAGTTTTATAGAATTTCAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGAATATAAAAATATATTATCAGTTTACACATTTTTGATATCTCTGACAGCAATGCAGATAAATTGGCTGATACTTGTAAGGGTGGAGCACCTCTATTACAGATTTTAAGGTATGAAATTTTCAAAAAAATTGAAATACCTGACTTTCCGGGATAGCGAAGCATCCTTGTCGAACAGGACCCGATATTCGAAGGAAGCACAGGAGTAGCATCTGAAAATGTGCTCCAGTGATAAAATTTCAAAATTTTGGATTTTCAGATTCTCAAGCTTCTTGTTTTTTGTTTTTAAGGTTTTTCAAATTCCATCAGTATTGCTAACGGTTTCTGGAATTAGACTTGTTAGATTTTCAAAATTTTTAATTTTTGAAATTCGAAATTTTAGATATTCAGAATCAGAATTCCATGATTTTAAAAATTAGAAACTTCAGAATTTAGAAATTCGGAACTTTTGAATATTTCGATATATTTTTTTTCCAGATTTTCAGCACTTCAGAACCTGAAAATTTCTTAATTCCAGAGTTTAAAATTTTCAGTTTTATAGAATTTCAGAAATTCAGAAATTTTGAAATTTTGAATATTTCAAATGTTGCACTTTCGAATTTTCGAATTTTCTGGTTTTCTGGATTTCCGAAATTCTGAACTTTTTAGTTTCTAAATTTCAATAACTCAAAATTCCGGATACACGGACTTTCATTTCAGAATTTCAAAATTTCAGAATTTCCGAATTTTTGAATTTTTGATTTTCTGAATTTTCAGAATTTCATAGATTCAGAATTCAAAATTTTCGAATTTCAAAATTTCAAAAATTCAGAATTTCAGAGTTTTAGAATTTCAGGATTTCAATTTTTTTTTGAATTTTCAGAATTTTTGAACATTGAAATTTCAAGATTTCGGGATTTCAGAATTTCAAAATGTTGTTATCTCAGGGTTCCGGAATTTCAAAAATTTGGAATTTTGGAATTTATGAATTTAGCAGAATTTCTGAGTTTCAGATTTTCA</canonical>
            <polymorphic>TCAGAATATAAAAATATATTATCAGTTTACACATTTTTGATATCTCTGACAGCAATGCAGATAAATTGGCTGATACTTGTAAGGGTGGAGCACCTCTATTACAGATTTTAAGGTATGAAATTTTCAAAAAAATTGAAATACCTGACTTTCCGGGATAGCGAAGCATCCTTGTCGAACAGGACCCGATATTCGAAGGAAGCACAGGAGTAGCATCTGAAAATGTGCTCCAGTGATAAAATTTCAAAATTTTGGATTTTCAGATTCTCAAGCTTCTTGTTTTTTGTTTTTAAGGTTTTTCAAATTCCATCAGTATTGCTAACGGTTTCTGGAATTAGACTTGTTAGATTTTCAAAATTTTTAATTTTTGAAATTCGAAATTTTAGATATTCAGAATCAGAATTCCATGATTTTAAAAATTAGAAACTTCAGAATTTAGAAATTCGGAACTTTTGAATATTTCGATATATTTTTTTTCCAGATTTTCAGCACTTCAGAACCTSAAAATTTCTTAATTCCAGAGTTTAAAATTTTCAGTTTTATAGAATTTCAGAAATTCAGAAATTTTGAAATTTTGAATATTTCAAATGTTGCACTTTCGAATTTTCGAATTTTCTGGTTTTCTGGATTTCCGAAATTCTGAACTTTTTAGTTTCTAAATTTCAATAACTCAAAATTCCGGATACACGGACTTTCATTTCAGAATTTCAAAATTTCAGAATTTCCGAATTTTTGAATTTTTGATTTTCTGAATTTTCAGAATTTCATAGATTCAGAATTCAAAATTTTCGAATTTCAAAATTTCAAAAATTCAGAATTTCAGAGTTTTAGAATTTCAGGATTTCAATTTTTTTTTGAATTTTCAGAATTTTTGAACATTGAAATTTCAAGATTTCGGGATTTCAGAATTTCAAAATGTTGTTATCTCAGGGTTCCGGAATTTCAAAAATTTGGAATTTTGGAATTTATGAATTTAGCAGAATTTCTGAGTTTCAGATTTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAGNNNCTG</site>
                <isoschizomers>
                    <enzyme>AlwNI</enzyme>
                    <enzyme>CaiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAACGGTTTCTGGAATTAGACT</pcr_primer_p1>
		<pcr_primer_p2>CTTTGAAAAGCGTTTTCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>835</pcr_amplicon_size>
		<canonical_amplicon>CTAACGGTTTCTGGAATTAGACTTGTTAGATTTTCAAAATTTTTAATTTTTGAAATTCGAAATTTTAGATATTCAGAATCAGAATTCCATGATTTTAAAAATTAGAAACTTCAGAATTTAGAAATTCGGAACTTTTGAATATTTCGATATATTTTTTTTCCAGATTTTCAGCACTTCAGAACCTGAAAATTTCTTAATTCCAGAG</canonical_amplicon>
		<polymorphic_amplicon>CTAACGGTTTCTGGAATTAGACTTGTTAGATTTTCAAAATTTTTAATTTTTGAAATTCGAAATTTTAGATATTCAGAATCAGAATTCCATGATTTTAAAAATTAGAAACTTCAGAATTTAGAAATTCGGAACTTTTGAATATTTCGATATATTTTTTTTCCAGATTTTCAGCACTTCAGAACCTSAAAATTTCTTAATTCCAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24287</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>256494</contig_pos>
        <strand></strand>
        <context>gaaattttga[A/C]attttgaata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAGTTTAAAATTTTCAGTTTTATAGAATTTCAGAAATTCAGAAATTTTGA</left_flank>
        <right_flank>ATTTTGAATATTTCAAATGTTGCACTTTCGAATTTTCGAATTTTCTGGTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTGATACTTGTAAGGGTGGAGCACCTCTATTACAGATTTTAAGGTATGAAATTTTCAAAAAAATTGAAATACCTGACTTTCCGGGATAGCGAAGCATCCTTGTCGAACAGGACCCGATATTCGAAGGAAGCACAGGAGTAGCATCTGAAAATGTGCTCCAGTGATAAAATTTCAAAATTTTGGATTTTCAGATTCTCAAGCTTCTTGTTTTTTGTTTTTAAGGTTTTTCAAATTCCATCAGTATTGCTAACGGTTTCTGGAATTAGACTTGTTAGATTTTCAAAATTTTTAATTTTTGAAATTCGAAATTTTAGATATTCAGAATCAGAATTCCATGATTTTAAAAATTAGAAACTTCAGAATTTAGAAATTCGGAACTTTTGAATATTTCGATATATTTTTTTTCCAGATTTTCAGCACTTCAGAACCTGAAAATTTCTTAATTCCAGAGTTTAAAATTTTCAGTTTTATAGAATTTCAGAAATTCAGAAATTTTGAAATTTTGAATATTTCAAATGTTGCACTTTCGAATTTTCGAATTTTCTGGTTTTCTGGATTTCCGAAATTCTGAACTTTTTAGTTTCTAAATTTCAATAACTCAAAATTCCGGATACACGGACTTTCATTTCAGAATTTCAAAATTTCAGAATTTCCGAATTTTTGAATTTTTGATTTTCTGAATTTTCAGAATTTCATAGATTCAGAATTCAAAATTTTCGAATTTCAAAATTTCAAAAATTCAGAATTTCAGAGTTTTAGAATTTCAGGATTTCAATTTTTTTTTGAATTTTCAGAATTTTTGAACATTGAAATTTCAAGATTTCGGGATTTCAGAATTTCAAAATGTTGTTATCTCAGGGTTCCGGAATTTCAAAAATTTGGAATTTTGGAATTTATGAATTTAGCAGAATTTCTGAGTTTCAGATTTTCAGAATCTCATAATTCGTAAATTCCAGATTTTCGGAAATTCAGAATTTAAGAATATTTGAAAATTTGGAT</canonical>
            <polymorphic>GCTGATACTTGTAAGGGTGGAGCACCTCTATTACAGATTTTAAGGTATGAAATTTTCAAAAAAATTGAAATACCTGACTTTCCGGGATAGCGAAGCATCCTTGTCGAACAGGACCCGATATTCGAAGGAAGCACAGGAGTAGCATCTGAAAATGTGCTCCAGTGATAAAATTTCAAAATTTTGGATTTTCAGATTCTCAAGCTTCTTGTTTTTTGTTTTTAAGGTTTTTCAAATTCCATCAGTATTGCTAACGGTTTCTGGAATTAGACTTGTTAGATTTTCAAAATTTTTAATTTTTGAAATTCGAAATTTTAGATATTCAGAATCAGAATTCCATGATTTTAAAAATTAGAAACTTCAGAATTTAGAAATTCGGAACTTTTGAATATTTCGATATATTTTTTTTCCAGATTTTCAGCACTTCAGAACCTGAAAATTTCTTAATTCCAGAGTTTAAAATTTTCAGTTTTATAGAATTTCAGAAATTCAGAAATTTTGAMATTTTGAATATTTCAAATGTTGCACTTTCGAATTTTCGAATTTTCTGGTTTTCTGGATTTCCGAAATTCTGAACTTTTTAGTTTCTAAATTTCAATAACTCAAAATTCCGGATACACGGACTTTCATTTCAGAATTTCAAAATTTCAGAATTTCCGAATTTTTGAATTTTTGATTTTCTGAATTTTCAGAATTTCATAGATTCAGAATTCAAAATTTTCGAATTTCAAAATTTCAAAAATTCAGAATTTCAGAGTTTTAGAATTTCAGGATTTCAATTTTTTTTTGAATTTTCAGAATTTTTGAACATTGAAATTTCAAGATTTCGGGATTTCAGAATTTCAAAATGTTGTTATCTCAGGGTTCCGGAATTTCAAAAATTTGGAATTTTGGAATTTATGAATTTAGCAGAATTTCTGAGTTTCAGATTTTCAGAATCTCATAATTCGTAAATTCCAGATTTTCGGAAATTCAGAATTTAAGAATATTTGAAAATTTGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>118 65 55 53 50 40 32 32 31 29 26 26 24 23 23 22 18 17 17 16 16 16 16 16 16 10 9 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7 7 7</canonical_bands>
                <polymorphic_bands>118 65 55 53 50 40 39 32 32 29 26 26 24 23 23 22 18 17 17 16 16 16 16 16 16 10 9 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>106 65 55 50 32 32 31 30 29 26 24 23 23 22 18 17 17 17 16 16 16 16 16 15 15 14 12 12 10 9 9 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7 7 7 7</canonical_bands>
                <polymorphic_bands>106 65 55 50 39 32 32 30 29 26 24 23 23 22 18 17 17 17 16 16 16 16 16 15 15 14 12 12 10 9 9 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAACGGTTTCTGGAATTAGACT</pcr_primer_p1>
		<pcr_primer_p2>CTTTGAAAAGCGTTTTCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>835</pcr_amplicon_size>
		<canonical_amplicon>CTAACGGTTTCTGGAATTAGACTTGTTAGATTTTCAAAATTTTTAATTTTTGAAATTCGAAATTTTAGATATTCAGAATCAGAATTCCATGATTTTAAAAATTAGAAACTTCAGAATTTAGAAATTCGGAACTTTTGAATATTTCGATATATTTTTTTTCCAGATTTTCAGCACTTCAGAACCTGAAAATTTCTTAATTCCAGAGTTTAAAATTTTCAGTTTTATAGAATTTCAGAAATTCAGAAATTTTGAAATTTTGAATATTTCAAATGT</canonical_amplicon>
		<polymorphic_amplicon>CTAACGGTTTCTGGAATTAGACTTGTTAGATTTTCAAAATTTTTAATTTTTGAAATTCGAAATTTTAGATATTCAGAATCAGAATTCCATGATTTTAAAAATTAGAAACTTCAGAATTTAGAAATTCGGAACTTTTGAATATTTCGATATATTTTTTTTCCAGATTTTCAGCACTTCAGAACCTGAAAATTTCTTAATTCCAGAGTTTAAAATTTTCAGTTTTATAGAATTTCAGAAATTCAGAAATTTTGAMATTTTGAATATTTCAAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24288</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>256597</contig_pos>
        <strand></strand>
        <context>caataactca[A/G]aattccggat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGGATTTCCGAAATTCTGAACTTTTTAGTTTCTAAATTTCAATAACTCA</left_flank>
        <right_flank>AATTCCGGATACACGGACTTTCATTTCAGAATTTCAAAATTTCAGAATTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAACAGGACCCGATATTCGAAGGAAGCACAGGAGTAGCATCTGAAAATGTGCTCCAGTGATAAAATTTCAAAATTTTGGATTTTCAGATTCTCAAGCTTCTTGTTTTTTGTTTTTAAGGTTTTTCAAATTCCATCAGTATTGCTAACGGTTTCTGGAATTAGACTTGTTAGATTTTCAAAATTTTTAATTTTTGAAATTCGAAATTTTAGATATTCAGAATCAGAATTCCATGATTTTAAAAATTAGAAACTTCAGAATTTAGAAATTCGGAACTTTTGAATATTTCGATATATTTTTTTTCCAGATTTTCAGCACTTCAGAACCTGAAAATTTCTTAATTCCAGAGTTTAAAATTTTCAGTTTTATAGAATTTCAGAAATTCAGAAATTTTGAAATTTTGAATATTTCAAATGTTGCACTTTCGAATTTTCGAATTTTCTGGTTTTCTGGATTTCCGAAATTCTGAACTTTTTAGTTTCTAAATTTCAATAACTCAAAATTCCGGATACACGGACTTTCATTTCAGAATTTCAAAATTTCAGAATTTCCGAATTTTTGAATTTTTGATTTTCTGAATTTTCAGAATTTCATAGATTCAGAATTCAAAATTTTCGAATTTCAAAATTTCAAAAATTCAGAATTTCAGAGTTTTAGAATTTCAGGATTTCAATTTTTTTTTGAATTTTCAGAATTTTTGAACATTGAAATTTCAAGATTTCGGGATTTCAGAATTTCAAAATGTTGTTATCTCAGGGTTCCGGAATTTCAAAAATTTGGAATTTTGGAATTTATGAATTTAGCAGAATTTCTGAGTTTCAGATTTTCAGAATCTCATAATTCGTAAATTCCAGATTTTCGGAAATTCAGAATTTAAGAATATTTGAAAATTTGGATTTCACAAACTCAGAATTTGAGATTTTCAAACTTTCAGGGGAAGAATTTCAGAATTTCAAATTAAAGAAAACGCTTTTCAAAGCCTTGCCTGTCTCCCAAATCA</canonical>
            <polymorphic>TCGAACAGGACCCGATATTCGAAGGAAGCACAGGAGTAGCATCTGAAAATGTGCTCCAGTGATAAAATTTCAAAATTTTGGATTTTCAGATTCTCAAGCTTCTTGTTTTTTGTTTTTAAGGTTTTTCAAATTCCATCAGTATTGCTAACGGTTTCTGGAATTAGACTTGTTAGATTTTCAAAATTTTTAATTTTTGAAATTCGAAATTTTAGATATTCAGAATCAGAATTCCATGATTTTAAAAATTAGAAACTTCAGAATTTAGAAATTCGGAACTTTTGAATATTTCGATATATTTTTTTTCCAGATTTTCAGCACTTCAGAACCTGAAAATTTCTTAATTCCAGAGTTTAAAATTTTCAGTTTTATAGAATTTCAGAAATTCAGAAATTTTGAAATTTTGAATATTTCAAATGTTGCACTTTCGAATTTTCGAATTTTCTGGTTTTCTGGATTTCCGAAATTCTGAACTTTTTAGTTTCTAAATTTCAATAACTCARAATTCCGGATACACGGACTTTCATTTCAGAATTTCAAAATTTCAGAATTTCCGAATTTTTGAATTTTTGATTTTCTGAATTTTCAGAATTTCATAGATTCAGAATTCAAAATTTTCGAATTTCAAAATTTCAAAAATTCAGAATTTCAGAGTTTTAGAATTTCAGGATTTCAATTTTTTTTTGAATTTTCAGAATTTTTGAACATTGAAATTTCAAGATTTCGGGATTTCAGAATTTCAAAATGTTGTTATCTCAGGGTTCCGGAATTTCAAAAATTTGGAATTTTGGAATTTATGAATTTAGCAGAATTTCTGAGTTTCAGATTTTCAGAATCTCATAATTCGTAAATTCCAGATTTTCGGAAATTCAGAATTTAAGAATATTTGAAAATTTGGATTTCACAAACTCAGAATTTGAGATTTTCAAACTTTCAGGGGAAGAATTTCAGAATTTCAAATTAAAGAAAACGCTTTTCAAAGCCTTGCCTGTCTCCCAAATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>65 65 55 53 52 40 32 32 31 30 29 26 26 24 23 23 22 22 18 17 17 16 16 16 16 16 16 10 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7 7 7</canonical_bands>
                <polymorphic_bands>65 65 55 53 52 45 40 32 32 31 30 26 26 24 23 23 22 22 18 17 17 16 16 16 16 16 10 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAACGGTTTCTGGAATTAGACT</pcr_primer_p1>
		<pcr_primer_p2>CTTTGAAAAGCGTTTTCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>835</pcr_amplicon_size>
		<canonical_amplicon>CTAACGGTTTCTGGAATTAGACTTGTTAGATTTTCAAAATTTTTAATTTTTGAAATTCGAAATTTTAGATATTCAGAATCAGAATTCCATGATTTTAAAAATTAGAAACTTCAGAATTTAGAAATTCGGAACTTTTGAATATTTCGATATATTTTTTTTCCAGATTTTCAGCACTTCAGAACCTGAAAATTTCTTAATTCCAGAGTTTAAAATTTTCAGTTTTATAGAATTTCAGAAATTCAGAAATTTTGAAATTTTGAATATTTCAAATGTTGCACTTTCGAATTTTCGAATTTTCTGGTTTTCTGGATTTCCGAAATTCTGAACTTTTTAGTTTCTAAATTTCAATAACTCAAAATTCCGGATACACGGACTTTCATTTCAGAATTTCAAAATTTCAGAATTTCCGAATTTTTGAATTTTTGATTTTCTGAATTTTCAGAATTTCATAGATTCAGAATTCAAAATTTTCGAATTTCAAAATTTCAAAAATTCAGAATTTCAGAGTTTTAGAATTTCAGGATTTCAATTTTTTTTTGAATTTTCAGAATTTTTGAACATTGAAATTTCAAGATTTCGGGATTTCAGAATTTCAAAATGTTGTTATCTCAGGGTTCCGGAATTTCAAAAATTTGGAATTTTGGAATTTATGAATTTAGCAGAATTTCTGAGTTTCAGATTTTCAGAATCTCATAATTCGTAAATTCCAGATTTTCGGAAATTCAGAATTTAAGAATATTTGAAAATTTGGATTTCACAAACTCAGAATTTGAGATTTTCAAACTTTCAGGGGAAGAATTTCAGAATTTCAAATTAAAGAAAACGCTTTTCAAAG</canonical_amplicon>
		<polymorphic_amplicon>CTAACGGTTTCTGGAATTAGACTTGTTAGATTTTCAAAATTTTTAATTTTTGAAATTCGAAATTTTAGATATTCAGAATCAGAATTCCATGATTTTAAAAATTAGAAACTTCAGAATTTAGAAATTCGGAACTTTTGAATATTTCGATATATTTTTTTTCCAGATTTTCAGCACTTCAGAACCTGAAAATTTCTTAATTCCAGAGTTTAAAATTTTCAGTTTTATAGAATTTCAGAAATTCAGAAATTTTGAAATTTTGAATATTTCAAATGTTGCACTTTCGAATTTTCGAATTTTCTGGTTTTCTGGATTTCCGAAATTCTGAACTTTTTAGTTTCTAAATTTCAATAACTCARAATTCCGGATACACGGACTTTCATTTCAGAATTTCAAAATTTCAGAATTTCCGAATTTTTGAATTTTTGATTTTCTGAATTTTCAGAATTTCATAGATTCAGAATTCAAAATTTTCGAATTTCAAAATTTCAAAAATTCAGAATTTCAGAGTTTTAGAATTTCAGGATTTCAATTTTTTTTTGAATTTTCAGAATTTTTGAACATTGAAATTTCAAGATTTCGGGATTTCAGAATTTCAAAATGTTGTTATCTCAGGGTTCCGGAATTTCAAAAATTTGGAATTTTGGAATTTATGAATTTAGCAGAATTTCTGAGTTTCAGATTTTCAGAATCTCATAATTCGTAAATTCCAGATTTTCGGAAATTCAGAATTTAAGAATATTTGAAAATTTGGATTTCACAAACTCAGAATTTGAGATTTTCAAACTTTCAGGGGAAGAATTTCAGAATTTCAAATTAAAGAAAACGCTTTTCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24289</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>256649</contig_pos>
        <strand></strand>
        <context>tcagaatttc[C/G]gaatttttga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTCCGGATACACGGACTTTCATTTCAGAATTTCAAAATTTCAGAATTTC</left_flank>
        <right_flank>GAATTTTTGAATTTTTGATTTTCTGAATTTTCAGAATTTCATAGATTCAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCCAGTGATAAAATTTCAAAATTTTGGATTTTCAGATTCTCAAGCTTCTTGTTTTTTGTTTTTAAGGTTTTTCAAATTCCATCAGTATTGCTAACGGTTTCTGGAATTAGACTTGTTAGATTTTCAAAATTTTTAATTTTTGAAATTCGAAATTTTAGATATTCAGAATCAGAATTCCATGATTTTAAAAATTAGAAACTTCAGAATTTAGAAATTCGGAACTTTTGAATATTTCGATATATTTTTTTTCCAGATTTTCAGCACTTCAGAACCTGAAAATTTCTTAATTCCAGAGTTTAAAATTTTCAGTTTTATAGAATTTCAGAAATTCAGAAATTTTGAAATTTTGAATATTTCAAATGTTGCACTTTCGAATTTTCGAATTTTCTGGTTTTCTGGATTTCCGAAATTCTGAACTTTTTAGTTTCTAAATTTCAATAACTCAAAATTCCGGATACACGGACTTTCATTTCAGAATTTCAAAATTTCAGAATTTCCGAATTTTTGAATTTTTGATTTTCTGAATTTTCAGAATTTCATAGATTCAGAATTCAAAATTTTCGAATTTCAAAATTTCAAAAATTCAGAATTTCAGAGTTTTAGAATTTCAGGATTTCAATTTTTTTTTGAATTTTCAGAATTTTTGAACATTGAAATTTCAAGATTTCGGGATTTCAGAATTTCAAAATGTTGTTATCTCAGGGTTCCGGAATTTCAAAAATTTGGAATTTTGGAATTTATGAATTTAGCAGAATTTCTGAGTTTCAGATTTTCAGAATCTCATAATTCGTAAATTCCAGATTTTCGGAAATTCAGAATTTAAGAATATTTGAAAATTTGGATTTCACAAACTCAGAATTTGAGATTTTCAAACTTTCAGGGGAAGAATTTCAGAATTTCAAATTAAAGAAAACGCTTTTCAAAGCCTTGCCTGTCTCCCAAATCATTATCATCAGAGCTCAGTTTCCTTTATTACTCAATATTCACTTTCACTTTTC</canonical>
            <polymorphic>GCTCCAGTGATAAAATTTCAAAATTTTGGATTTTCAGATTCTCAAGCTTCTTGTTTTTTGTTTTTAAGGTTTTTCAAATTCCATCAGTATTGCTAACGGTTTCTGGAATTAGACTTGTTAGATTTTCAAAATTTTTAATTTTTGAAATTCGAAATTTTAGATATTCAGAATCAGAATTCCATGATTTTAAAAATTAGAAACTTCAGAATTTAGAAATTCGGAACTTTTGAATATTTCGATATATTTTTTTTCCAGATTTTCAGCACTTCAGAACCTGAAAATTTCTTAATTCCAGAGTTTAAAATTTTCAGTTTTATAGAATTTCAGAAATTCAGAAATTTTGAAATTTTGAATATTTCAAATGTTGCACTTTCGAATTTTCGAATTTTCTGGTTTTCTGGATTTCCGAAATTCTGAACTTTTTAGTTTCTAAATTTCAATAACTCAAAATTCCGGATACACGGACTTTCATTTCAGAATTTCAAAATTTCAGAATTTCSGAATTTTTGAATTTTTGATTTTCTGAATTTTCAGAATTTCATAGATTCAGAATTCAAAATTTTCGAATTTCAAAATTTCAAAAATTCAGAATTTCAGAGTTTTAGAATTTCAGGATTTCAATTTTTTTTTGAATTTTCAGAATTTTTGAACATTGAAATTTCAAGATTTCGGGATTTCAGAATTTCAAAATGTTGTTATCTCAGGGTTCCGGAATTTCAAAAATTTGGAATTTTGGAATTTATGAATTTAGCAGAATTTCTGAGTTTCAGATTTTCAGAATCTCATAATTCGTAAATTCCAGATTTTCGGAAATTCAGAATTTAAGAATATTTGAAAATTTGGATTTCACAAACTCAGAATTTGAGATTTTCAAACTTTCAGGGGAAGAATTTCAGAATTTCAAATTAAAGAAAACGCTTTTCAAAGCCTTGCCTGTCTCCCAAATCATTATCATCAGAGCTCAGTTTCCTTTATTACTCAATATTCACTTTCACTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAACGGTTTCTGGAATTAGACT</pcr_primer_p1>
		<pcr_primer_p2>CTTTGAAAAGCGTTTTCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>835</pcr_amplicon_size>
		<canonical_amplicon>CTAACGGTTTCTGGAATTAGACTTGTTAGATTTTCAAAATTTTTAATTTTTGAAATTCGAAATTTTAGATATTCAGAATCAGAATTCCATGATTTTAAAAATTAGAAACTTCAGAATTTAGAAATTCGGAACTTTTGAATATTTCGATATATTTTTTTTCCAGATTTTCAGCACTTCAGAACCTGAAAATTTCTTAATTCCAGAGTTTAAAATTTTCAGTTTTATAGAATTTCAGAAATTCAGAAATTTTGAAATTTTGAATATTTCAAATGTTGCACTTTCGAATTTTCGAATTTTCTGGTTTTCTGGATTTCCGAAATTCTGAACTTTTTAGTTTCTAAATTTCAATAACTCAAAATTCCGGATACACGGACTTTCATTTCAGAATTTCAAAATTTCAGAATTTCCGAATTTTTGAATTTTTGATTTTCTGAATTTTCAGAATTTCATAGATTCAGAATTCAAAATTTTCGAATTTCAAAATTTCAAAAATTCAGAATTTCAGAGTTTTAGAATTTCAGGATTTCAATTTTTTTTTGAATTTTCAGAATTTTTGAACATTGAAATTTCAAGATTTCGGGATTTCAGAATTTCAAAATGTTGTTATCTCAGGGTTCCGGAATTTCAAAAATTTGGAATTTTGGAATTTATGAATTTAGCAGAATTTCTGAGTTTCAGATTTTCAGAATCTCATAATTCGTAAATTCCAGATTTTCGGAAATTCAGAATTTAAGAATATTTGAAAATTTGGATTTCACAAACTCAGAATTTGAGATTTTCAAACTTTCAGGGGAAGAATTTCAGAATTTCAAATTAAAGAAAACGCTTTTCAAAG</canonical_amplicon>
		<polymorphic_amplicon>CTAACGGTTTCTGGAATTAGACTTGTTAGATTTTCAAAATTTTTAATTTTTGAAATTCGAAATTTTAGATATTCAGAATCAGAATTCCATGATTTTAAAAATTAGAAACTTCAGAATTTAGAAATTCGGAACTTTTGAATATTTCGATATATTTTTTTTCCAGATTTTCAGCACTTCAGAACCTGAAAATTTCTTAATTCCAGAGTTTAAAATTTTCAGTTTTATAGAATTTCAGAAATTCAGAAATTTTGAAATTTTGAATATTTCAAATGTTGCACTTTCGAATTTTCGAATTTTCTGGTTTTCTGGATTTCCGAAATTCTGAACTTTTTAGTTTCTAAATTTCAATAACTCAAAATTCCGGATACACGGACTTTCATTTCAGAATTTCAAAATTTCAGAATTTCSGAATTTTTGAATTTTTGATTTTCTGAATTTTCAGAATTTCATAGATTCAGAATTCAAAATTTTCGAATTTCAAAATTTCAAAAATTCAGAATTTCAGAGTTTTAGAATTTCAGGATTTCAATTTTTTTTTGAATTTTCAGAATTTTTGAACATTGAAATTTCAAGATTTCGGGATTTCAGAATTTCAAAATGTTGTTATCTCAGGGTTCCGGAATTTCAAAAATTTGGAATTTTGGAATTTATGAATTTAGCAGAATTTCTGAGTTTCAGATTTTCAGAATCTCATAATTCGTAAATTCCAGATTTTCGGAAATTCAGAATTTAAGAATATTTGAAAATTTGGATTTCACAAACTCAGAATTTGAGATTTTCAAACTTTCAGGGGAAGAATTTCAGAATTTCAAATTAAAGAAAACGCTTTTCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24290</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>260535</contig_pos>
        <strand>+</strand>
        <context>AAAACCATAK[G/T]AGAATTTACT</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAG</left_flank>
        <right_flank>AGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGGAATTTAGAATCCTAAAATTCCAAAATCCCAGATCCTCAAAACTTAAAAATCCCAAAATCACAAAATCTCTAAATCTCCGAATTTTAATTTTCTGAAAAAATTTGAATTCCCGCCAAACCAAAATAAAGAAGTATTGCGAATTCTGACTCCAAAGACAAACTATAAGAAAATCTCCAAACTTGGAATTTTCAGTTCCCTCAGAATTCTTAAATTCCTTATTTTCAGAACAAATGTTACTTTTTTTCCCCAAAATTCTCCTGAAATCCGTTGAGTAAATATGAATTCATTTCTGATTTTCCATCAGATTTATTTGAGAGTTCATCCGTTTGGATTTTTCCTAAATTGTCGTTTGAAAGAAGAAGACTAAGAATACATTTTGAATAGTGCCAATCAGAGATCTCTTGTTTTCTCTGGCTTCTTCTTCGTCTTCTTCTTCTTCTTAACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACAT</canonical>
            <polymorphic>TCAGGAATTTAGAATCCTAAAATTCCAAAATCCCAGATCCTCAAAACTTAAAAATCCCAAAATCACAAAATCTCTAAATCTCCGAATTTTAATTTTCTGAAAAAATTTGAATTCCCGCCAAACCAAAATAAAGAAGTATTGCGAATTCTGACTCCAAAGACAAACTATAAGAAAATCTCCAAACTTGGAATTTTCAGTTCCCTCAGAATTCTTAAATTCCTTATTTTCAGAACAAATGTTACTTTTTTTCCCCAAAATTCTCCTGAAATCCGTTGAGTAAATATGAATTCATTTCTGATTTTCCATCAGATTTATTTGAGAGTTCATCCGTTTGGATTTTTCCTAAATTGTCGTTTGAAAGAAGAAGACTAAGAATACATTTTGAATAGTGCCAATCAGAGATCTCTTGTTTTCTCTGGCTTCTTCTTCGTCTTCTTCTTCTTCTTAACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGKAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAACAACAAAAAGGGAAAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGTTTTGAACATTTCCTA</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>AACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTT</canonical_amplicon>
		<polymorphic_amplicon>AACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGKAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24291</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>260585</contig_pos>
        <strand>+</strand>
        <context>AGTAAGATTC[C/G]AAAARTTCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTC</left_flank>
        <right_flank>AAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATCCCAAAATCACAAAATCTCTAAATCTCCGAATTTTAATTTTCTGAAAAAATTTGAATTCCCGCCAAACCAAAATAAAGAAGTATTGCGAATTCTGACTCCAAAGACAAACTATAAGAAAATCTCCAAACTTGGAATTTTCAGTTCCCTCAGAATTCTTAAATTCCTTATTTTCAGAACAAATGTTACTTTTTTTCCCCAAAATTCTCCTGAAATCCGTTGAGTAAATATGAATTCATTTCTGATTTTCCATCAGATTTATTTGAGAGTTCATCCGTTTGGATTTTTCCTAAATTGTCGTTTGAAAGAAGAAGACTAAGAATACATTTTGAATAGTGCCAATCAGAGATCTCTTGTTTTCTCTGGCTTCTTCTTCGTCTTCTTCTTCTTCTTAACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGAGACATATGTTTTTAGAATTCGAGAGTTATCATATTTG</canonical>
            <polymorphic>AAAATCCCAAAATCACAAAATCTCTAAATCTCCGAATTTTAATTTTCTGAAAAAATTTGAATTCCCGCCAAACCAAAATAAAGAAGTATTGCGAATTCTGACTCCAAAGACAAACTATAAGAAAATCTCCAAACTTGGAATTTTCAGTTCCCTCAGAATTCTTAAATTCCTTATTTTCAGAACAAATGTTACTTTTTTTCCCCAAAATTCTCCTGAAATCCGTTGAGTAAATATGAATTCATTTCTGATTTTCCATCAGATTTATTTGAGAGTTCATCCGTTTGGATTTTTCCTAAATTGTCGTTTGAAAGAAGAAGACTAAGAATACATTTTGAATAGTGCCAATCAGAGATCTCTTGTTTTCTCTGGCTTCTTCTTCGTCTTCTTCTTCTTCTTAACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCSAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGAGACATATGTTTTTAGAATTCGAGAGTTATCATATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGGGAAAGGAGAAGATTT</pcr_primer_p1>
		<pcr_primer_p2>CCCCTTTAAAAATGGTAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGG</canonical_amplicon>
		<polymorphic_amplicon>AAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCSAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24292</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>260939</contig_pos>
        <strand>+</strand>
        <context>GCTAAGGGGA[C/G]AATAGAAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGA</left_flank>
        <right_flank>AATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTGTTTTCTCTGGCTTCTTCTTCGTCTTCTTCTTCTTCTTAACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGAGACATATGTTTTTAGAATTCGAGAGTTATCATATTTGATAAATGGTCAGTTTTGAGAAGGGTCACTTCGGACGTATTGGTTGTGAAATCATATTTAATTTTCAAACTTTTCAAAAATGTGTGGACAAACTGACCGAGAAAGAGACGCAACTTCATAAAGAAGGAATACAATTTTTAAAATGAATAAGGAATACAGTGCGGTCAATATCTATACGACCCCCACCCCCTACATTTTGGGCGCACAGGAAAAGCTGGGAGAGATATCAAAAAACGGTTAACGCCATTCGATTCACAATAAAAAATAACCTCTAGAGACGAAGTTTCATAATTTTAGCACTTTCCCTGAACACGTACCATCCAAAAAGCCCTTTTGCAAGCGGTCAATATCCATA</canonical>
            <polymorphic>TCTTGTTTTCTCTGGCTTCTTCTTCGTCTTCTTCTTCTTCTTAACAACAACAAAAAGGGAAAGGAGAAGATTTTTTGATGTCCCGAAAACCATAGAAGAATTTACTAGCTCAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGASAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGAGACATATGTTTTTAGAATTCGAGAGTTATCATATTTGATAAATGGTCAGTTTTGAGAAGGGTCACTTCGGACGTATTGGTTGTGAAATCATATTTAATTTTCAAACTTTTCAAAAATGTGTGGACAAACTGACCGAGAAAGAGACGCAACTTCATAAAGAAGGAATACAATTTTTAAAATGAATAAGGAATACAGTGCGGTCAATATCTATACGACCCCCACCCCCTACATTTTGGGCGCACAGGAAAAGCTGGGAGAGATATCAAAAAACGGTTAACGCCATTCGATTCACAATAAAAAATAACCTCTAGAGACGAAGTTTCATAATTTTAGCACTTTCCCTGAACACGTACCATCCAAAAAGCCCTTTTGCAAGCGGTCAATATCCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTACACCCATTAGTGTCAATTC</pcr_primer_p1>
		<pcr_primer_p2>CTTCTCAAAACTGACCATTTATC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGAGACATATGTTTTTAGAATTCGAGAGTTATCATATTTGATAAATGGTCAGTTTTGAGAAG</canonical_amplicon>
		<polymorphic_amplicon>CTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGASAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGAGACATATGTTTTTAGAATTCGAGAGTTATCATATTTGATAAATGGTCAGTTTTGAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24293</snp_id>
        <super_contig>c000501091.Contig3</super_contig>
        <contig_pos>261049</contig_pos>
        <strand></strand>
        <context>GTTATAATGA[G/A]ACATATGTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGA</left_flank>
        <right_flank>ACATATGTTTTTAGAATTCGAGAGTTATCATATTTGATAAATGGTCAGTT</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGAGACATATGTTTTTAGAATTCGAGAGTTATCATATTTGATAAATGGTCAGTTTTGAGAAGGGTCACTTCGGACGTATTGGTTGTGAAATCATATTTAATTTTCAAACTTTTCAAAAATGTGTGGACAAACTGACCGAGAAAGAGACGCAACTTCATAAAGAAGGAATACAATTTTTAAAATGAATAAGGAATACAGTGCGGTCAATATCTATACGACCCCCACCCCCTACATTTTGGGCGCACAGGAAAAGCTGGGAGAGATATCAAAAAACGGTTAACGCCATTCGATTCACAATAAAAAATAACCTCTAGAGACGAAGTTTCATAATTTTAGCACTTTCCCTGAACACGTACCATCCAAAAAGCCCTTTTGCAAGCGGTCAATATCCATACGACCACCTGTAAAAGGTAAAATCTCAAGTATTTTAAAGAGCAAAATTGGACTATTTTTGGTTGGAAACTGCTAAAATAGTCTTAAAACAGCATGCTTTGACAGTTTATA</canonical>
            <polymorphic>CAAAATAAATGAGAATTAACGATAGAGTAAGATTCAAAAAGTTCCAAAAAAAAATTGAATTCCAATTCTTGCAAATCGAGCTCTATTGGAACATTTAACAATTAAAGTAAGCCTAAAATACGGGGTTTGATTTTTTACATATTTTAGGAAATGTTCAAAACCTTTTCAAACCTATTTTTACCATTTTTAAAGGGGTTTTAAGATAAAAAATCCAACTAGAATATTGCTAAATTGAAACCTACTTTAAAAATTCAGCGGATCGAATTAACGAGACCAGAATCAGAAATAGGGATAAGGGCAGATTCTTGCTCATCTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGARACATATGTTTTTAGAATTCGAGAGTTATCATATTTGATAAATGGTCAGTTTTGAGAAGGGTCACTTCGGACGTATTGGTTGTGAAATCATATTTAATTTTCAAACTTTTCAAAAATGTGTGGACAAACTGACCGAGAAAGAGACGCAACTTCATAAAGAAGGAATACAATTTTTAAAATGAATAAGGAATACAGTGCGGTCAATATCTATACGACCCCCACCCCCTACATTTTGGGCGCACAGGAAAAGCTGGGAGAGATATCAAAAAACGGTTAACGCCATTCGATTCACAATAAAAAATAACCTCTAGAGACGAAGTTTCATAATTTTAGCACTTTCCCTGAACACGTACCATCCAAAAAGCCCTTTTGCAAGCGGTCAATATCCATACGACCACCTGTAAAAGGTAAAATCTCAAGTATTTTAAAGAGCAAAATTGGACTATTTTTGGTTGGAAACTGCTAAAATAGTCTTAAAACAGCATGCTTTGACAGTTTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTACACCCATTAGTGTCAATTC</pcr_primer_p1>
		<pcr_primer_p2>CTTCTCAAAACTGACCATTTATC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGAGACATATGTTTTTAGAATTCGAGAGTTATCATATTTGATAAATGGTCAGTTTTGAGAAG</canonical_amplicon>
		<polymorphic_amplicon>CTTACACCCATTAGTGTCAATTCCAAAGCAGGCAAACGGGGAGAATGAAGAAAGAAAAGGGGCGGAGCTAAGGGGAGAATAGAAGAAGACATACACTCCGCCTCCATTTACGAGGAGCGAAAGAGGCAAAGCATCTGTTTTCAGTTTTCTGGAGATGGGTCAAGCAATAACATGTGGTTATAATGARACATATGTTTTTAGAATTCGAGAGTTATCATATTTGATAAATGGTCAGTTTTGAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24294</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>2583</contig_pos>
        <strand>+</strand>
        <context>ACGAATTCCT[C/T]TTGCCGAAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCAAAGAAAGTCTCGGACAACCATCTCGCACCGAAGATGACGAATTCCT</left_flank>
        <right_flank>TTGCCGAAACGAAAGCCAAAGACTCCACAGAAGAGCGCTGTGGACATTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAACGTTCCAAATATTTCATCAAGTAAGTGTTGTATTCGATACGAGAAATAACTTTGCGGTTTCTAGAATTCTTGGCTCAAAGGAGTGCCTCTGCAATCGATACGAAACAAGTAACCCGTATGACAACATCTGTCTCCAGAACACCGAACACAAGACCGATGACGACGAGAACCTTATCAAAAGTCGATACATCGCCAGGTGGATCCAAGTTTGCAAGACCAACTGTTGGTACTCTGGGTCCGCGTACGACATCCAATCTACGCGCGCGTGGAAGTGTTCCTACTTCTCAACCTGGATCCCGAAACGGATCACCGCCACGGCGTCCATCTACAACGGGAACCCTTCCAATGGAAATGCAACGTGTAAAGTCGAATCTTGGATCAAGCTCATTTGTTTCATCTTTAACACCTGATCAAGCAGAGAGTTTGCAAAAGGCAATGAACACAGCCAAAGAAAGTCTCGGACAACCATCTCGCACCGAAGATGACGAATTCCTCTTGCCGAAACGAAAGCCAAAGACTCCACAGAAGAGCGCTGTGGACATTTCAAGAGTTGAAGCCGTAATCAGAGCTTGTGTTTCAACATCAGCGAACGAGAAGCGAGATGGAATCAAAATGTTGTCGATAATAGTTTCTGAGCCGAATTTGAGTCAAATTGAACTCAAAAACATTGGACAGGTGCTTAATCGTCTCTTGGGTGAAGCCACAAATCCGGTGGTCTTGGAATCGGTAGCATCATTCGTCAAAGCTCATCACTCTCGTCTCAGCGAATGGCTTAAACTCGGTCTCGGAAAGATGTTCGCCAAGAAGGGATCCGAAATGATGCCGATCATGAAGAAACACATTGTCACGACTATTAACGCAATTCTTTCATCATTCGATCCAGCTTTACAATTGAAAGCTACTTGCGAGCTGATGTGCGATCCAATTCACTTGCTGTCTCCAAAGGCACGTGTCGCTCTTCTAGAATATCTCACTGATTTGCTGGAGAAGCACAT</canonical>
            <polymorphic>AGAAACGTTCCAAATATTTCATCAAGTAAGTGTTGTATTCGATACGAGAAATAACTTTGCGGTTTCTAGAATTCTTGGCTCAAAGGAGTGCCTCTGCAATCGATACGAAACAAGTAACCCGTATGACAACATCTGTCTCCAGAACACCGAACACAAGACCGATGACGACGAGAACCTTATCAAAAGTCGATACATCGCCAGGTGGATCCAAGTTTGCAAGACCAACTGTTGGTACTCTGGGTCCGCGTACGACATCCAATCTACGCGCGCGTGGAAGTGTTCCTACTTCTCAACCTGGATCCCGAAACGGATCACCGCCACGGCGTCCATCTACAACGGGAACCCTTCCAATGGAAATGCAACGTGTAAAGTCGAATCTTGGATCAAGCTCATTTGTTTCATCTTTAACACCTGATCAAGCAGAGAGTTTGCAAAAGGCAATGAACACAGCCAAAGAAAGTCTCGGACAACCATCTCGCACCGAAGATGACGAATTCCTYTTGCCGAAACGAAAGCCAAAGACTCCACAGAAGAGCGCTGTGGACATTTCAAGAGTTGAAGCCGTAATCAGAGCTTGTGTTTCAACATCAGCGAACGAGAAGCGAGATGGAATCAAAATGTTGTCGATAATAGTTTCTGAGCCGAATTTGAGTCAAATTGAACTCAAAAACATTGGACAGGTGCTTAATCGTCTCTTGGGTGAAGCCACAAATCCGGTGGTCTTGGAATCGGTAGCATCATTCGTCAAAGCTCATCACTCTCGTCTCAGCGAATGGCTTAAACTCGGTCTCGGAAAGATGTTCGCCAAGAAGGGATCCGAAATGATGCCGATCATGAAGAAACACATTGTCACGACTATTAACGCAATTCTTTCATCATTCGATCCAGCTTTACAATTGAAAGCTACTTGCGAGCTGATGTGCGATCCAATTCACTTGCTGTCTCCAAAGGCACGTGTCGCTCTTCTAGAATATCTCACTGATTTGCTGGAGAAGCACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAAGCTCATTTGTTTCATCT</pcr_primer_p1>
		<pcr_primer_p2>GACAACATTTTGATTCCATCTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATCAAGCTCATTTGTTTCATCTTTAACACCTGATCAAGCAGAGAGTTTGCAAAAGGCAATGAACACAGCCAAAGAAAGTCTCGGACAACCATCTCGCACCGAAGATGACGAATTCCTCTTGCCGAAACGAAAGCCAAAGACTCCACAGAAGAGCGCTGTGGACATTTCAAGAGTTGAAGCCGTAATCAGAGCTTGTGTTTCAACATCAGCGAACGAGAAGCGAGATGGAATCAAAATGTTGTC</canonical_amplicon>
		<polymorphic_amplicon>ATCAAGCTCATTTGTTTCATCTTTAACACCTGATCAAGCAGAGAGTTTGCAAAAGGCAATGAACACAGCCAAAGAAAGTCTCGGACAACCATCTCGCACCGAAGATGACGAATTCCTYTTGCCGAAACGAAAGCCAAAGACTCCACAGAAGAGCGCTGTGGACATTTCAAGAGTTGAAGCCGTAATCAGAGCTTGTGTTTCAACATCAGCGAACGAGAAGCGAGATGGAATCAAAATGTTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24295</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>2711</contig_pos>
        <strand>+</strand>
        <context>ATGTTGTCGA[C/T]AATAGTTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTTTCAACATCAGCGAACGAGAAGCGAGATGGAATCAAAATGTTGTCGA</left_flank>
        <right_flank>AATAGTTTCTGAGCCGAATTTGAGTCAAATTGAACTCAAAAACATTGGAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATCTGTCTCCAGAACACCGAACACAAGACCGATGACGACGAGAACCTTATCAAAAGTCGATACATCGCCAGGTGGATCCAAGTTTGCAAGACCAACTGTTGGTACTCTGGGTCCGCGTACGACATCCAATCTACGCGCGCGTGGAAGTGTTCCTACTTCTCAACCTGGATCCCGAAACGGATCACCGCCACGGCGTCCATCTACAACGGGAACCCTTCCAATGGAAATGCAACGTGTAAAGTCGAATCTTGGATCAAGCTCATTTGTTTCATCTTTAACACCTGATCAAGCAGAGAGTTTGCAAAAGGCAATGAACACAGCCAAAGAAAGTCTCGGACAACCATCTCGCACCGAAGATGACGAATTCCTCTTGCCGAAACGAAAGCCAAAGACTCCACAGAAGAGCGCTGTGGACATTTCAAGAGTTGAAGCCGTAATCAGAGCTTGTGTTTCAACATCAGCGAACGAGAAGCGAGATGGAATCAAAATGTTGTCGATAATAGTTTCTGAGCCGAATTTGAGTCAAATTGAACTCAAAAACATTGGACAGGTGCTTAATCGTCTCTTGGGTGAAGCCACAAATCCGGTGGTCTTGGAATCGGTAGCATCATTCGTCAAAGCTCATCACTCTCGTCTCAGCGAATGGCTTAAACTCGGTCTCGGAAAGATGTTCGCCAAGAAGGGATCCGAAATGATGCCGATCATGAAGAAACACATTGTCACGACTATTAACGCAATTCTTTCATCATTCGATCCAGCTTTACAATTGAAAGCTACTTGCGAGCTGATGTGCGATCCAATTCACTTGCTGTCTCCAAAGGCACGTGTCGCTCTTCTAGAATATCTCACTGATTTGCTGGAGAAGCACATGGAACGTGGTTCTCCATTCAACACTAAAGAAGTGAAAGCCACAATTCTGAAGATGTTTTCATGGATGTCAGATCAGCGTAACATGCAACAGATTGTACCAGTAAGATAGATCTATATTCCAAACATTC</canonical>
            <polymorphic>ACATCTGTCTCCAGAACACCGAACACAAGACCGATGACGACGAGAACCTTATCAAAAGTCGATACATCGCCAGGTGGATCCAAGTTTGCAAGACCAACTGTTGGTACTCTGGGTCCGCGTACGACATCCAATCTACGCGCGCGTGGAAGTGTTCCTACTTCTCAACCTGGATCCCGAAACGGATCACCGCCACGGCGTCCATCTACAACGGGAACCCTTCCAATGGAAATGCAACGTGTAAAGTCGAATCTTGGATCAAGCTCATTTGTTTCATCTTTAACACCTGATCAAGCAGAGAGTTTGCAAAAGGCAATGAACACAGCCAAAGAAAGTCTCGGACAACCATCTCGCACCGAAGATGACGAATTCCTCTTGCCGAAACGAAAGCCAAAGACTCCACAGAAGAGCGCTGTGGACATTTCAAGAGTTGAAGCCGTAATCAGAGCTTGTGTTTCAACATCAGCGAACGAGAAGCGAGATGGAATCAAAATGTTGTCGAYAATAGTTTCTGAGCCGAATTTGAGTCAAATTGAACTCAAAAACATTGGACAGGTGCTTAATCGTCTCTTGGGTGAAGCCACAAATCCGGTGGTCTTGGAATCGGTAGCATCATTCGTCAAAGCTCATCACTCTCGTCTCAGCGAATGGCTTAAACTCGGTCTCGGAAAGATGTTCGCCAAGAAGGGATCCGAAATGATGCCGATCATGAAGAAACACATTGTCACGACTATTAACGCAATTCTTTCATCATTCGATCCAGCTTTACAATTGAAAGCTACTTGCGAGCTGATGTGCGATCCAATTCACTTGCTGTCTCCAAAGGCACGTGTCGCTCTTCTAGAATATCTCACTGATTTGCTGGAGAAGCACATGGAACGTGGTTCTCCATTCAACACTAAAGAAGTGAAAGCCACAATTCTGAAGATGTTTTCATGGATGTCAGATCAGCGTAACATGCAACAGATTGTACCAGTAAGATAGATCTATATTCCAAACATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAACACAGCCAAAGAAAG</pcr_primer_p1>
		<pcr_primer_p2>ATTAAGCACCTGTCCAATGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGAACACAGCCAAAGAAAGTCTCGGACAACCATCTCGCACCGAAGATGACGAATTCCTCTTGCCGAAACGAAAGCCAAAGACTCCACAGAAGAGCGCTGTGGACATTTCAAGAGTTGAAGCCGTAATCAGAGCTTGTGTTTCAACATCAGCGAACGAGAAGCGAGATGGAATCAAAATGTTGTCGATAATAGTTTCTGAGCCGAATTTGAGTCAAATTGAACTCAAAAACATTGGACAGGTGCTTAAT</canonical_amplicon>
		<polymorphic_amplicon>ATGAACACAGCCAAAGAAAGTCTCGGACAACCATCTCGCACCGAAGATGACGAATTCCTCTTGCCGAAACGAAAGCCAAAGACTCCACAGAAGAGCGCTGTGGACATTTCAAGAGTTGAAGCCGTAATCAGAGCTTGTGTTTCAACATCAGCGAACGAGAAGCGAGATGGAATCAAAATGTTGTCGAYAATAGTTTCTGAGCCGAATTTGAGTCAAATTGAACTCAAAAACATTGGACAGGTGCTTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24296</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>46302</contig_pos>
        <strand>+</strand>
        <context>TCCTTATTGA[C/G]TTTTTTTCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCTCGTTCAACCGCCCAAGAAACGACCGAAGCACAACTGTCCTTATTGA</left_flank>
        <right_flank>TTTTTTTCGGAAAATTAGAATTTGTCTTGATCATTGAATTGTAGTCAACG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCCGATGTGATGCGAGAACTTTTGGTTTATATGTATACAGGACAAGCTAGGTATATAGATCAAATGGCTCAAAGTCTGATTGCGGCGGCTGATAAATATCAACTGGACCGGCTAAAAGTAAGATTTAGTGACGAAATATAATAGTTTCATCAAAATTAATATTCCAGGTGATGTGTGAGCAAGCATTGTGCTATCAATTGACGACTGAAAACGCATGTTTGACGCTGGTTCTAGCAGATATGTATTCAGCAGCACAATTAAGAGCACATGCTATTAACTTCATCAACGTTAATGCAGCTGAGGTGAGAAAAATCTTTTTCTCTCAATCCATAATCTATTCTATCACAGGTCATGTCTTCCGAAGGATGGCATGGACTAGTGCGAGACCACCCGAAGCTGCTCGAAGAAGTCTTCAGGGCGTTGGCAATGCAGCAGACACCACCAGTAGTTCTCGTTCAACCGCCCAAGAAACGACCGAAGCACAACTGTCCTTATTGATTTTTTTTCGGAAAATTAGAATTTGTCTTGATCATTGAATTGTAGTCAACGCGATTAGTATCCTCCCTAATTCTTTATTTTTTGAGGAGGACACTAATCGACAGAAAACGACGGGTTCCTCCTGTATGTTTATGTATTTTTTTTTTGAATTTTACCCACTTTATGTTTTCATTCTTGAATGCCCCTTGAATTTTATCGTCTACTGGTTCCCTGTTCTACCCCTCTTCTTTTATTAGTTTCTGCTATCAATCTGCAATTCGATTAGACGGTTTTTTTGGAATACAAAGATAATTTATGCCTTTTATCTGTTTGATTTCAATACCATTCAGAAATGAGAAACTTGATAACGCCATCTGATGAATTAATTATCAGTATAGAATTCCTTGTTTTCGAAGAAAAAGAACCTTCATCAAAGCTTCAAAAAAATACAGATGGATGACGATGAACAGAAAGGATACACCTGGGAGGCTGGTTACGCTGAAGGCTTGAACATCAATGAAG</canonical>
            <polymorphic>TCCCGATGTGATGCGAGAACTTTTGGTTTATATGTATACAGGACAAGCTAGGTATATAGATCAAATGGCTCAAAGTCTGATTGCGGCGGCTGATAAATATCAACTGGACCGGCTAAAAGTAAGATTTAGTGACGAAATATAATAGTTTCATCAAAATTAATATTCCAGGTGATGTGTGAGCAAGCATTGTGCTATCAATTGACGACTGAAAACGCATGTTTGACGCTGGTTCTAGCAGATATGTATTCAGCAGCACAATTAAGAGCACATGCTATTAACTTCATCAACGTTAATGCAGCTGAGGTGAGAAAAATCTTTTTCTCTCAATCCATAATCTATTCTATCACAGGTCATGTCTTCCGAAGGATGGCATGGACTAGTGCGAGACCACCCGAAGCTGCTCGAAGAAGTCTTCAGGGCGTTGGCAATGCAGCAGACACCACCAGTAGTTCTCGTTCAACCGCCCAAGAAACGACCGAAGCACAACTGTCCTTATTGASTTTTTTTCGGAAAATTAGAATTTGTCTTGATCATTGAATTGTAGTCAACGCGATTAGTATCCTCCCTAATTCTTTATTTTTTGAGGAGGACACTAATCGACAGAAAACGACGGGTTCCTCCTGTATGTTTATGTATTTTTTTTTTGAATTTTACCCACTTTATGTTTTCATTCTTGAATGCCCCTTGAATTTTATCGTCTACTGGTTCCCTGTTCTACCCCTCTTCTTTTATTAGTTTCTGCTATCAATCTGCAATTCGATTAGACGGTTTTTTTGGAATACAAAGATAATTTATGCCTTTTATCTGTTTGATTTCAATACCATTCAGAAATGAGAAACTTGATAACGCCATCTGATGAATTAATTATCAGTATAGAATTCCTTGTTTTCGAAGAAAAAGAACCTTCATCAAAGCTTCAAAAAAATACAGATGGATGACGATGAACAGAAAGGATACACCTGGGAGGCTGGTTACGCTGAAGGCTTGAACATCAATGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCTTTTTCTCTCAATCCATAA</pcr_primer_p1>
		<pcr_primer_p2>ATACTAATCGCGTTGACTACAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATCTTTTTCTCTCAATCCATAATCTATTCTATCACAGGTCATGTCTTCCGAAGGATGGCATGGACTAGTGCGAGACCACCCGAAGCTGCTCGAAGAAGTCTTCAGGGCGTTGGCAATGCAGCAGACACCACCAGTAGTTCTCGTTCAACCGCCCAAGAAACGACCGAAGCACAACTGTCCTTATTGATTTTTTTTCGGAAAATTAGAATTTGTCTTGATCATTGAATTGTAGTCAACGCGATTAGTAT</canonical_amplicon>
		<polymorphic_amplicon>AAATCTTTTTCTCTCAATCCATAATCTATTCTATCACAGGTCATGTCTTCCGAAGGATGGCATGGACTAGTGCGAGACCACCCGAAGCTGCTCGAAGAAGTCTTCAGGGCGTTGGCAATGCAGCAGACACCACCAGTAGTTCTCGTTCAACCGCCCAAGAAACGACCGAAGCACAACTGTCCTTATTGASTTTTTTTCGGAAAATTAGAATTTGTCTTGATCATTGAATTGTAGTCAACGCGATTAGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24297</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>46326</contig_pos>
        <strand></strand>
        <context>ATTAGAATTT[G/C]TCTTGATCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GACCGAAGCACAACTGTCCTTATTGATTTTTTTTCGGAAAATTAGAATTT</left_flank>
        <right_flank>TCTTGATCATTGAATTGTAGTCAACGCGATTAGTATCCTCCCTAATTCTT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTTATATGTATACAGGACAAGCTAGGTATATAGATCAAATGGCTCAAAGTCTGATTGCGGCGGCTGATAAATATCAACTGGACCGGCTAAAAGTAAGATTTAGTGACGAAATATAATAGTTTCATCAAAATTAATATTCCAGGTGATGTGTGAGCAAGCATTGTGCTATCAATTGACGACTGAAAACGCATGTTTGACGCTGGTTCTAGCAGATATGTATTCAGCAGCACAATTAAGAGCACATGCTATTAACTTCATCAACGTTAATGCAGCTGAGGTGAGAAAAATCTTTTTCTCTCAATCCATAATCTATTCTATCACAGGTCATGTCTTCCGAAGGATGGCATGGACTAGTGCGAGACCACCCGAAGCTGCTCGAAGAAGTCTTCAGGGCGTTGGCAATGCAGCAGACACCACCAGTAGTTCTCGTTCAACCGCCCAAGAAACGACCGAAGCACAACTGTCCTTATTGATTTTTTTTCGGAAAATTAGAATTTGTCTTGATCATTGAATTGTAGTCAACGCGATTAGTATCCTCCCTAATTCTTTATTTTTTGAGGAGGACACTAATCGACAGAAAACGACGGGTTCCTCCTGTATGTTTATGTATTTTTTTTTTGAATTTTACCCACTTTATGTTTTCATTCTTGAATGCCCCTTGAATTTTATCGTCTACTGGTTCCCTGTTCTACCCCTCTTCTTTTATTAGTTTCTGCTATCAATCTGCAATTCGATTAGACGGTTTTTTTGGAATACAAAGATAATTTATGCCTTTTATCTGTTTGATTTCAATACCATTCAGAAATGAGAAACTTGATAACGCCATCTGATGAATTAATTATCAGTATAGAATTCCTTGTTTTCGAAGAAAAAGAACCTTCATCAAAGCTTCAAAAAAATACAGATGGATGACGATGAACAGAAAGGATACACCTGGGAGGCTGGTTACGCTGAAGGCTTGAACATCAATGAAGTTCTTGTCGAAGATGAGGGAGGAT</canonical>
            <polymorphic>GGTTTATATGTATACAGGACAAGCTAGGTATATAGATCAAATGGCTCAAAGTCTGATTGCGGCGGCTGATAAATATCAACTGGACCGGCTAAAAGTAAGATTTAGTGACGAAATATAATAGTTTCATCAAAATTAATATTCCAGGTGATGTGTGAGCAAGCATTGTGCTATCAATTGACGACTGAAAACGCATGTTTGACGCTGGTTCTAGCAGATATGTATTCAGCAGCACAATTAAGAGCACATGCTATTAACTTCATCAACGTTAATGCAGCTGAGGTGAGAAAAATCTTTTTCTCTCAATCCATAATCTATTCTATCACAGGTCATGTCTTCCGAAGGATGGCATGGACTAGTGCGAGACCACCCGAAGCTGCTCGAAGAAGTCTTCAGGGCGTTGGCAATGCAGCAGACACCACCAGTAGTTCTCGTTCAACCGCCCAAGAAACGACCGAAGCACAACTGTCCTTATTGATTTTTTTTCGGAAAATTAGAATTTSTCTTGATCATTGAATTGTAGTCAACGCGATTAGTATCCTCCCTAATTCTTTATTTTTTGAGGAGGACACTAATCGACAGAAAACGACGGGTTCCTCCTGTATGTTTATGTATTTTTTTTTTGAATTTTACCCACTTTATGTTTTCATTCTTGAATGCCCCTTGAATTTTATCGTCTACTGGTTCCCTGTTCTACCCCTCTTCTTTTATTAGTTTCTGCTATCAATCTGCAATTCGATTAGACGGTTTTTTTGGAATACAAAGATAATTTATGCCTTTTATCTGTTTGATTTCAATACCATTCAGAAATGAGAAACTTGATAACGCCATCTGATGAATTAATTATCAGTATAGAATTCCTTGTTTTCGAAGAAAAAGAACCTTCATCAAAGCTTCAAAAAAATACAGATGGATGACGATGAACAGAAAGGATACACCTGGGAGGCTGGTTACGCTGAAGGCTTGAACATCAATGAAGTTCTTGTCGAAGATGAGGGAGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTATCACAGGTCATGTCTTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATAAAGAATTAGGGAGGATAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATTCTATCACAGGTCATGTCTTCCGAAGGATGGCATGGACTAGTGCGAGACCACCCGAAGCTGCTCGAAGAAGTCTTCAGGGCGTTGGCAATGCAGCAGACACCACCAGTAGTTCTCGTTCAACCGCCCAAGAAACGACCGAAGCACAACTGTCCTTATTGATTTTTTTTCGGAAAATTAGAATTTGTCTTGATCATTGAATTGTAGTCAACGCGATTAGTATCCTCCCTAATTCTTTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTCTATCACAGGTCATGTCTTCCGAAGGATGGCATGGACTAGTGCGAGACCACCCGAAGCTGCTCGAAGAAGTCTTCAGGGCGTTGGCAATGCAGCAGACACCACCAGTAGTTCTCGTTCAACCGCCCAAGAAACGACCGAAGCACAACTGTCCTTATTGATTTTTTTTCGGAAAATTAGAATTTSTCTTGATCATTGAATTGTAGTCAACGCGATTAGTATCCTCCCTAATTCTTTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24298</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>74374</contig_pos>
        <strand>+</strand>
        <context>TTGAAAAATA[G/T]AACTGAAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GACTCCGCCCAAATATCTGCACTGACGGAAACGCCCACTTTTGAAAAATA</left_flank>
        <right_flank>AACTGAAAAGCGAGAGACGATTTAATGAATAGTATGAAGGTGCCGGAGAG</right_flank>
        <qual_score>148</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATCATTATAAATAATTTTTCAGTTGACAAAATTTTTTTCTTTTTTCCTTTCTCAGGAGCCGAGATAATAGAACTCAAAGTTGATTGTTTGAGTTGGATTTGTTTAGAGGGAATATGGTATACAGTACGGATCAAAATTTCTTTGGGATTTATCAAAATGTTTTTTTGTCAATTTTTCGATCTTGGATGTTGTTAATTTGAAAAAAGTAAAATTTAAGAACGTTTAATAGTTACTGTATCTTCCGGCGATGAGTTAAAATATTAGATCAACTTTTGAGAACGGTTATTAACTTATGGTTATGAACGGAACGAAAGAAAATCCTAGTTTCTATTTCTATGGTCTAGCTGAAAAAAAGAAGAAGGAGAAAAGAAAAAGGAAAATTCGAAGTGGCAGCCGTTGAATGAAAGGGAATCGGTGGAAAGCCTACCCTCTCGGTTTTTCGATTTCGACTCCGCCCAAATATCTGCACTGACGGAAACGCCCACTTTTGAAAAATAGAACTGAAAAGCGAGAGACGATTTAATGAATAGTATGAAGGTGCCGGAGAGTGGGACATAGAAAGAGCATTTCTTCCAGGCACAAGACGAGATAATGCCACGTCATTAAATCGACTGACGAAAAGCCGAAAAATGGAATTGGGGAGTTTGGGCTGACGGAGCTGAGAGGGAGAAGTATTGAAATGGAAGAAAAAGGGATGATCTGTTTAGAATGAGGTTTGGAAGTGGATAGAAGGCTCAACAATTAGAAGCCTGGCATGTTTCACCATCAGAACCAACATTGGAAATACAGTAACCCTATATTTCCCTGCACGTTTGAACTGTCAATTTTGAGCTCAATTATCTCGGTTCCTCCAAGAGATATCAACAATTTGTCAACTGATAAATTGTTTATCGTGATATTATAAATATTTTATCAGTTGACAAAATTTTGAGATCTCTCACAGGAACCGAGATAATAGCGCTCAAAGTTGACTATCTGGGTGGGCTTCTATTAGAGGT</canonical>
            <polymorphic>ATATCATTATAAATAATTTTTCAGTTGACAAAATTTTTTTCTTTTTTCCTTTCTCAGGAGCCGAGATAATAGAACTCAAAGTTGATTGTTTGAGTTGGATTTGTTTAGAGGGAATATGGTATACAGTACGGATCAAAATTTCTTTGGGATTTATCAAAATGTTTTTTTGTCAATTTTTCGATCTTGGATGTTGTTAATTTGAAAAAAGTAAAATTTAAGAACGTTTAATAGTTACTGTATCTTCCGGCGATGAGTTAAAATATTAGATCAACTTTTGAGAACGGTTATTAACTTATGGTTATGAACGGAACGAAAGAAAATCCTAGTTTCTATTTCTATGGTCTAGCTGAAAAAAAGAAGAAGGAGAAAAGAAAAAGGAAAATTCGAAGTGGCAGCCGTTGAATGAAAGGGAATCGGTGGAAAGCCTACCCTCTCGGTTTTTCGATTTCGACTCCGCCCAAATATCTGCACTGACGGAAACGCCCACTTTTGAAAAATAKAACTGAAAAGCGAGAGACGATTTAATGAATAGTATGAAGGTGCCGGAGAGTGGGACATAGAAAGAGCATTTCTTCCAGGCACAAGACGAGATAATGCCACGTCATTAAATCGACTGACGAAAAGCCGAAAAATGGAATTGGGGAGTTTGGGCTGACGGAGCTGAGAGGGAGAAGTATTGAAATGGAAGAAAAAGGGATGATCTGTTTAGAATGAGGTTTGGAAGTGGATAGAAGGCTCAACAATTAGAAGCCTGGCATGTTTCACCATCAGAACCAACATTGGAAATACAGTAACCCTATATTTCCCTGCACGTTTGAACTGTCAATTTTGAGCTCAATTATCTCGGTTCCTCCAAGAGATATCAACAATTTGTCAACTGATAAATTGTTTATCGTGATATTATAAATATTTTATCAGTTGACAAAATTTTGAGATCTCTCACAGGAACCGAGATAATAGCGCTCAAAGTTGACTATCTGGGTGGGCTTCTATTAGAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGAGAAAAGAAAAAGGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTAATGACGTGGCATTATCTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGGAGAAAAGAAAAAGGAAAATTCGAAGTGGCAGCCGTTGAATGAAAGGGAATCGGTGGAAAGCCTACCCTCTCGGTTTTTCGATTTCGACTCCGCCCAAATATCTGCACTGACGGAAACGCCCACTTTTGAAAAATAGAACTGAAAAGCGAGAGACGATTTAATGAATAGTATGAAGGTGCCGGAGAGTGGGACATAGAAAGAGCATTTCTTCCAGGCACAAGACGAGATAATGCCACGTCATTAA</canonical_amplicon>
		<polymorphic_amplicon>AAGGAGAAAAGAAAAAGGAAAATTCGAAGTGGCAGCCGTTGAATGAAAGGGAATCGGTGGAAAGCCTACCCTCTCGGTTTTTCGATTTCGACTCCGCCCAAATATCTGCACTGACGGAAACGCCCACTTTTGAAAAATAKAACTGAAAAGCGAGAGACGATTTAATGAATAGTATGAAGGTGCCGGAGAGTGGGACATAGAAAGAGCATTTCTTCCAGGCACAAGACGAGATAATGCCACGTCATTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24299</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>74445</contig_pos>
        <strand>+</strand>
        <context>AAAGAGCATT[C/T]CTTCCAGGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTAATGAATAGTATGAAGGTGCCGGAGAGTGGGACATAGAAAGAGCATT</left_flank>
        <right_flank>CTTCCAGGCACAAGACGAGATAATGCCACGTCATTAAATCGACTGACGAA</right_flank>
        <qual_score>148</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACTCAAAGTTGATTGTTTGAGTTGGATTTGTTTAGAGGGAATATGGTATACAGTACGGATCAAAATTTCTTTGGGATTTATCAAAATGTTTTTTTGTCAATTTTTCGATCTTGGATGTTGTTAATTTGAAAAAAGTAAAATTTAAGAACGTTTAATAGTTACTGTATCTTCCGGCGATGAGTTAAAATATTAGATCAACTTTTGAGAACGGTTATTAACTTATGGTTATGAACGGAACGAAAGAAAATCCTAGTTTCTATTTCTATGGTCTAGCTGAAAAAAAGAAGAAGGAGAAAAGAAAAAGGAAAATTCGAAGTGGCAGCCGTTGAATGAAAGGGAATCGGTGGAAAGCCTACCCTCTCGGTTTTTCGATTTCGACTCCGCCCAAATATCTGCACTGACGGAAACGCCCACTTTTGAAAAATAGAACTGAAAAGCGAGAGACGATTTAATGAATAGTATGAAGGTGCCGGAGAGTGGGACATAGAAAGAGCATTTCTTCCAGGCACAAGACGAGATAATGCCACGTCATTAAATCGACTGACGAAAAGCCGAAAAATGGAATTGGGGAGTTTGGGCTGACGGAGCTGAGAGGGAGAAGTATTGAAATGGAAGAAAAAGGGATGATCTGTTTAGAATGAGGTTTGGAAGTGGATAGAAGGCTCAACAATTAGAAGCCTGGCATGTTTCACCATCAGAACCAACATTGGAAATACAGTAACCCTATATTTCCCTGCACGTTTGAACTGTCAATTTTGAGCTCAATTATCTCGGTTCCTCCAAGAGATATCAACAATTTGTCAACTGATAAATTGTTTATCGTGATATTATAAATATTTTATCAGTTGACAAAATTTTGAGATCTCTCACAGGAACCGAGATAATAGCGCTCAAAGTTGACTATCTGGGTGGGCTTCTATTAGAGGTAATACTGTAATTAATAGTAAACCTGTGAGTTTTCCTAAGTTAAAGCCCACAAATATTCAGATTGAAAGACA</canonical>
            <polymorphic>GAACTCAAAGTTGATTGTTTGAGTTGGATTTGTTTAGAGGGAATATGGTATACAGTACGGATCAAAATTTCTTTGGGATTTATCAAAATGTTTTTTTGTCAATTTTTCGATCTTGGATGTTGTTAATTTGAAAAAAGTAAAATTTAAGAACGTTTAATAGTTACTGTATCTTCCGGCGATGAGTTAAAATATTAGATCAACTTTTGAGAACGGTTATTAACTTATGGTTATGAACGGAACGAAAGAAAATCCTAGTTTCTATTTCTATGGTCTAGCTGAAAAAAAGAAGAAGGAGAAAAGAAAAAGGAAAATTCGAAGTGGCAGCCGTTGAATGAAAGGGAATCGGTGGAAAGCCTACCCTCTCGGTTTTTCGATTTCGACTCCGCCCAAATATCTGCACTGACGGAAACGCCCACTTTTGAAAAATAGAACTGAAAAGCGAGAGACGATTTAATGAATAGTATGAAGGTGCCGGAGAGTGGGACATAGAAAGAGCATTYCTTCCAGGCACAAGACGAGATAATGCCACGTCATTAAATCGACTGACGAAAAGCCGAAAAATGGAATTGGGGAGTTTGGGCTGACGGAGCTGAGAGGGAGAAGTATTGAAATGGAAGAAAAAGGGATGATCTGTTTAGAATGAGGTTTGGAAGTGGATAGAAGGCTCAACAATTAGAAGCCTGGCATGTTTCACCATCAGAACCAACATTGGAAATACAGTAACCCTATATTTCCCTGCACGTTTGAACTGTCAATTTTGAGCTCAATTATCTCGGTTCCTCCAAGAGATATCAACAATTTGTCAACTGATAAATTGTTTATCGTGATATTATAAATATTTTATCAGTTGACAAAATTTTGAGATCTCTCACAGGAACCGAGATAATAGCGCTCAAAGTTGACTATCTGGGTGGGCTTCTATTAGAGGTAATACTGTAATTAATAGTAAACCTGTGAGTTTTCCTAAGTTAAAGCCCACAAATATTCAGATTGAAAGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATCTGCACTGACGGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTCTAAACAGATCATCCCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATCTGCACTGACGGAAACGCCCACTTTTGAAAAATAGAACTGAAAAGCGAGAGACGATTTAATGAATAGTATGAAGGTGCCGGAGAGTGGGACATAGAAAGAGCATTTCTTCCAGGCACAAGACGAGATAATGCCACGTCATTAAATCGACTGACGAAAAGCCGAAAAATGGAATTGGGGAGTTTGGGCTGACGGAGCTGAGAGGGAGAAGTATTGAAATGGAAGAAAAAGGGATGATCTGTTTAGAA</canonical_amplicon>
		<polymorphic_amplicon>ATATCTGCACTGACGGAAACGCCCACTTTTGAAAAATAGAACTGAAAAGCGAGAGACGATTTAATGAATAGTATGAAGGTGCCGGAGAGTGGGACATAGAAAGAGCATTYCTTCCAGGCACAAGACGAGATAATGCCACGTCATTAAATCGACTGACGAAAAGCCGAAAAATGGAATTGGGGAGTTTGGGCTGACGGAGCTGAGAGGGAGAAGTATTGAAATGGAAGAAAAAGGGATGATCTGTTTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24300</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>112336</contig_pos>
        <strand>+</strand>
        <context>TATGTATAAC[G/T]CGCACTACGC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGTTTCTTTTAAAATCAAATTTTTTGCACTAACTTGATGATATGTATAAC</left_flank>
        <right_flank>CGCACTACGCACTACGAAACGATACCATTTGGATTACTGTTTCTTGTCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGCGACTAGCTTCAAGCTGCGTAACTCTCGAGCCATCAAATCTCCTTCTTCAGAATTCGAGGGCAGCATTGGCCGCCCTCGAGTATGGTGACGACTTCGACCCTAGGTACACTTTTATACTTGTAAAGACCCATAAAACGTGCCGACTCCGAGAATGAATTAAACTGATTAGGTTCTGAAGTCAATGGTAAAAAAGTTCTGCGGCATCGCGTGTTGAACAATGGAGGTCCCGCCTTCTCTCAGTTTGATTAGTCTGGAATTTTGGTATTCTTAATCTAGAAATCACAGGAATGGGTCTTGACCGATATTCAGACAGCGAGATGGGTAATATTGGCCTCTGAGTTGAGACTGTTGTGAGTGGGAAAAATATCAAAAGGTACTTCAATCATTGAAGTTCAATATATACTTGTAATCCAAGCCATGGCGGGCCTTCGCTGGGCCCGTCATAGTTTCTTTTAAAATCAAATTTTTTGCACTAACTTGATGATATGTATAACTCGCACTACGCACTACGAAACGATACCATTTGGATTACTGTTTCTTGTCTACGAACAAAGTCATGCGGCTAATCTGAGCATGGTAACGCTTGTTTTTTTCCGCCCGGTTTGTCTATAACTTTGTTCATAGACAAGATACAATTTTTATAATAGTATGATTTTGTAGTACTTGTTGAGTTCTATCATCTCCGATTCAGGTGGTCCGAACATATTTGATTCTAAAAGAAACTATGGCTACTTAGGAAGGCAGGTCTATGAACGATTTACAAGTATGCTTCAATGATTGGAAGGTCTTTGTGATATATGAATTTTGTGGAAGATCTGGTCTAAGAGACTGTAGTAGTTGGTTAATTCTTTGCAACGCGACGACAGGAGAACTGTCACAGTGCTGAAATGCCAGTTTACTAAAGTTGAGCGTCTCAACTCTCTGGCTATTTAGCCTATCCTCTTTTCATTTCGAGTTTCCTATTTCGACCCAATCCCGTTTCATTTGCTGCTTCT</canonical>
            <polymorphic>TTCGCGACTAGCTTCAAGCTGCGTAACTCTCGAGCCATCAAATCTCCTTCTTCAGAATTCGAGGGCAGCATTGGCCGCCCTCGAGTATGGTGACGACTTCGACCCTAGGTACACTTTTATACTTGTAAAGACCCATAAAACGTGCCGACTCCGAGAATGAATTAAACTGATTAGGTTCTGAAGTCAATGGTAAAAAAGTTCTGCGGCATCGCGTGTTGAACAATGGAGGTCCCGCCTTCTCTCAGTTTGATTAGTCTGGAATTTTGGTATTCTTAATCTAGAAATCACAGGAATGGGTCTTGACCGATATTCAGACAGCGAGATGGGTAATATTGGCCTCTGAGTTGAGACTGTTGTGAGTGGGAAAAATATCAAAAGGTACTTCAATCATTGAAGTTCAATATATACTTGTAATCCAAGCCATGGCGGGCCTTCGCTGGGCCCGTCATAGTTTCTTTTAAAATCAAATTTTTTGCACTAACTTGATGATATGTATAACKCGCACTACGCACTACGAAACGATACCATTTGGATTACTGTTTCTTGTCTACGAACAAAGTCATGCGGCTAATCTGAGCATGGTAACGCTTGTTTTTTTCCGCCCGGTTTGTCTATAACTTTGTTCATAGACAAGATACAATTTTTATAATAGTATGATTTTGTAGTACTTGTTGAGTTCTATCATCTCCGATTCAGGTGGTCCGAACATATTTGATTCTAAAAGAAACTATGGCTACTTAGGAAGGCAGGTCTATGAACGATTTACAAGTATGCTTCAATGATTGGAAGGTCTTTGTGATATATGAATTTTGTGGAAGATCTGGTCTAAGAGACTGTAGTAGTTGGTTAATTCTTTGCAACGCGACGACAGGAGAACTGTCACAGTGCTGAAATGCCAGTTTACTAAAGTTGAGCGTCTCAACTCTCTGGCTATTTAGCCTATCCTCTTTTCATTTCGAGTTTCCTATTTCGACCCAATCCCGTTTCATTTGCTGCTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCCGTCATAGTTTCTTTTA</pcr_primer_p1>
		<pcr_primer_p2>CATAGACCTGCCTTCCTAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>316</pcr_amplicon_size>
		<canonical_amplicon>GCCCGTCATAGTTTCTTTTAAAATCAAATTTTTTGCACTAACTTGATGATATGTATAACTCGCACTACGCACTACGAAACGATACCATTTGGATTACTGTTTCTTGTCTACGAACAAAGTCATGCGGCTAATCTGAGCATGGTAACGCTTGTTTTTTTCCGCCCGGTTTGTCTATAACTTTGTTCATAGACAAGATACAATTTTTATAATAGTATGATTTTGTAGTACTTGTTGAGTTCTATCATCTCCGATTCAGGTGGTCCGAACATATTTGATTCTAAAAGAAACTATGGCTACTTAGGAAGGCAGGTCTATG</canonical_amplicon>
		<polymorphic_amplicon>GCCCGTCATAGTTTCTTTTAAAATCAAATTTTTTGCACTAACTTGATGATATGTATAACKCGCACTACGCACTACGAAACGATACCATTTGGATTACTGTTTCTTGTCTACGAACAAAGTCATGCGGCTAATCTGAGCATGGTAACGCTTGTTTTTTTCCGCCCGGTTTGTCTATAACTTTGTTCATAGACAAGATACAATTTTTATAATAGTATGATTTTGTAGTACTTGTTGAGTTCTATCATCTCCGATTCAGGTGGTCCGAACATATTTGATTCTAAAAGAAACTATGGCTACTTAGGAAGGCAGGTCTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24301</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>112363</contig_pos>
        <strand>+</strand>
        <context>AAACGATACC[A/C]TTTGGATTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACTAACTTGATGATATGTATAACTCGCACTACGCACTACGAAACGATACC</left_flank>
        <right_flank>TTTGGATTACTGTTTCTTGTCTACGAACAAAGTCATGCGGCTAATCTGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCGAGCCATCAAATCTCCTTCTTCAGAATTCGAGGGCAGCATTGGCCGCCCTCGAGTATGGTGACGACTTCGACCCTAGGTACACTTTTATACTTGTAAAGACCCATAAAACGTGCCGACTCCGAGAATGAATTAAACTGATTAGGTTCTGAAGTCAATGGTAAAAAAGTTCTGCGGCATCGCGTGTTGAACAATGGAGGTCCCGCCTTCTCTCAGTTTGATTAGTCTGGAATTTTGGTATTCTTAATCTAGAAATCACAGGAATGGGTCTTGACCGATATTCAGACAGCGAGATGGGTAATATTGGCCTCTGAGTTGAGACTGTTGTGAGTGGGAAAAATATCAAAAGGTACTTCAATCATTGAAGTTCAATATATACTTGTAATCCAAGCCATGGCGGGCCTTCGCTGGGCCCGTCATAGTTTCTTTTAAAATCAAATTTTTTGCACTAACTTGATGATATGTATAACTCGCACTACGCACTACGAAACGATACCATTTGGATTACTGTTTCTTGTCTACGAACAAAGTCATGCGGCTAATCTGAGCATGGTAACGCTTGTTTTTTTCCGCCCGGTTTGTCTATAACTTTGTTCATAGACAAGATACAATTTTTATAATAGTATGATTTTGTAGTACTTGTTGAGTTCTATCATCTCCGATTCAGGTGGTCCGAACATATTTGATTCTAAAAGAAACTATGGCTACTTAGGAAGGCAGGTCTATGAACGATTTACAAGTATGCTTCAATGATTGGAAGGTCTTTGTGATATATGAATTTTGTGGAAGATCTGGTCTAAGAGACTGTAGTAGTTGGTTAATTCTTTGCAACGCGACGACAGGAGAACTGTCACAGTGCTGAAATGCCAGTTTACTAAAGTTGAGCGTCTCAACTCTCTGGCTATTTAGCCTATCCTCTTTTCATTTCGAGTTTCCTATTTCGACCCAATCCCGTTTCATTTGCTGCTTCTGTCAACGATTCTGGAATTTTTAGGCGA</canonical>
            <polymorphic>TCTCGAGCCATCAAATCTCCTTCTTCAGAATTCGAGGGCAGCATTGGCCGCCCTCGAGTATGGTGACGACTTCGACCCTAGGTACACTTTTATACTTGTAAAGACCCATAAAACGTGCCGACTCCGAGAATGAATTAAACTGATTAGGTTCTGAAGTCAATGGTAAAAAAGTTCTGCGGCATCGCGTGTTGAACAATGGAGGTCCCGCCTTCTCTCAGTTTGATTAGTCTGGAATTTTGGTATTCTTAATCTAGAAATCACAGGAATGGGTCTTGACCGATATTCAGACAGCGAGATGGGTAATATTGGCCTCTGAGTTGAGACTGTTGTGAGTGGGAAAAATATCAAAAGGTACTTCAATCATTGAAGTTCAATATATACTTGTAATCCAAGCCATGGCGGGCCTTCGCTGGGCCCGTCATAGTTTCTTTTAAAATCAAATTTTTTGCACTAACTTGATGATATGTATAACTCGCACTACGCACTACGAAACGATACCMTTTGGATTACTGTTTCTTGTCTACGAACAAAGTCATGCGGCTAATCTGAGCATGGTAACGCTTGTTTTTTTCCGCCCGGTTTGTCTATAACTTTGTTCATAGACAAGATACAATTTTTATAATAGTATGATTTTGTAGTACTTGTTGAGTTCTATCATCTCCGATTCAGGTGGTCCGAACATATTTGATTCTAAAAGAAACTATGGCTACTTAGGAAGGCAGGTCTATGAACGATTTACAAGTATGCTTCAATGATTGGAAGGTCTTTGTGATATATGAATTTTGTGGAAGATCTGGTCTAAGAGACTGTAGTAGTTGGTTAATTCTTTGCAACGCGACGACAGGAGAACTGTCACAGTGCTGAAATGCCAGTTTACTAAAGTTGAGCGTCTCAACTCTCTGGCTATTTAGCCTATCCTCTTTTCATTTCGAGTTTCCTATTTCGACCCAATCCCGTTTCATTTGCTGCTTCTGTCAACGATTCTGGAATTTTTAGGCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCCGTCATAGTTTCTTTTA</pcr_primer_p1>
		<pcr_primer_p2>CATAGACCTGCCTTCCTAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>316</pcr_amplicon_size>
		<canonical_amplicon>GCCCGTCATAGTTTCTTTTAAAATCAAATTTTTTGCACTAACTTGATGATATGTATAACTCGCACTACGCACTACGAAACGATACCATTTGGATTACTGTTTCTTGTCTACGAACAAAGTCATGCGGCTAATCTGAGCATGGTAACGCTTGTTTTTTTCCGCCCGGTTTGTCTATAACTTTGTTCATAGACAAGATACAATTTTTATAATAGTATGATTTTGTAGTACTTGTTGAGTTCTATCATCTCCGATTCAGGTGGTCCGAACATATTTGATTCTAAAAGAAACTATGGCTACTTAGGAAGGCAGGTCTATG</canonical_amplicon>
		<polymorphic_amplicon>GCCCGTCATAGTTTCTTTTAAAATCAAATTTTTTGCACTAACTTGATGATATGTATAACTCGCACTACGCACTACGAAACGATACCMTTTGGATTACTGTTTCTTGTCTACGAACAAAGTCATGCGGCTAATCTGAGCATGGTAACGCTTGTTTTTTTCCGCCCGGTTTGTCTATAACTTTGTTCATAGACAAGATACAATTTTTATAATAGTATGATTTTGTAGTACTTGTTGAGTTCTATCATCTCCGATTCAGGTGGTCCGAACATATTTGATTCTAAAAGAAACTATGGCTACTTAGGAAGGCAGGTCTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24302</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>112426</contig_pos>
        <strand>+</strand>
        <context>TGGTAACGCT[G/T]GTTTTTTTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCTTGTCTACGAACAAAGTCATGCGGCTAATCTGAGCATGGTAACGCT</left_flank>
        <right_flank>GTTTTTTTCCGCCCGGTTTGTCTATAACTTTGTTCATAGACAAGATACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACGACTTCGACCCTAGGTACACTTTTATACTTGTAAAGACCCATAAAACGTGCCGACTCCGAGAATGAATTAAACTGATTAGGTTCTGAAGTCAATGGTAAAAAAGTTCTGCGGCATCGCGTGTTGAACAATGGAGGTCCCGCCTTCTCTCAGTTTGATTAGTCTGGAATTTTGGTATTCTTAATCTAGAAATCACAGGAATGGGTCTTGACCGATATTCAGACAGCGAGATGGGTAATATTGGCCTCTGAGTTGAGACTGTTGTGAGTGGGAAAAATATCAAAAGGTACTTCAATCATTGAAGTTCAATATATACTTGTAATCCAAGCCATGGCGGGCCTTCGCTGGGCCCGTCATAGTTTCTTTTAAAATCAAATTTTTTGCACTAACTTGATGATATGTATAACTCGCACTACGCACTACGAAACGATACCATTTGGATTACTGTTTCTTGTCTACGAACAAAGTCATGCGGCTAATCTGAGCATGGTAACGCTTGTTTTTTTCCGCCCGGTTTGTCTATAACTTTGTTCATAGACAAGATACAATTTTTATAATAGTATGATTTTGTAGTACTTGTTGAGTTCTATCATCTCCGATTCAGGTGGTCCGAACATATTTGATTCTAAAAGAAACTATGGCTACTTAGGAAGGCAGGTCTATGAACGATTTACAAGTATGCTTCAATGATTGGAAGGTCTTTGTGATATATGAATTTTGTGGAAGATCTGGTCTAAGAGACTGTAGTAGTTGGTTAATTCTTTGCAACGCGACGACAGGAGAACTGTCACAGTGCTGAAATGCCAGTTTACTAAAGTTGAGCGTCTCAACTCTCTGGCTATTTAGCCTATCCTCTTTTCATTTCGAGTTTCCTATTTCGACCCAATCCCGTTTCATTTGCTGCTTCTGTCAACGATTCTGGAATTTTTAGGCGATATCTTCTCTCCGATTAAATTTCTTCTTGATGTTCTCCGTTTGTTTTTCAAGTCTTTCAAACT</canonical>
            <polymorphic>TGACGACTTCGACCCTAGGTACACTTTTATACTTGTAAAGACCCATAAAACGTGCCGACTCCGAGAATGAATTAAACTGATTAGGTTCTGAAGTCAATGGTAAAAAAGTTCTGCGGCATCGCGTGTTGAACAATGGAGGTCCCGCCTTCTCTCAGTTTGATTAGTCTGGAATTTTGGTATTCTTAATCTAGAAATCACAGGAATGGGTCTTGACCGATATTCAGACAGCGAGATGGGTAATATTGGCCTCTGAGTTGAGACTGTTGTGAGTGGGAAAAATATCAAAAGGTACTTCAATCATTGAAGTTCAATATATACTTGTAATCCAAGCCATGGCGGGCCTTCGCTGGGCCCGTCATAGTTTCTTTTAAAATCAAATTTTTTGCACTAACTTGATGATATGTATAACTCGCACTACGCACTACGAAACGATACCATTTGGATTACTGTTTCTTGTCTACGAACAAAGTCATGCGGCTAATCTGAGCATGGTAACGCTKGTTTTTTTCCGCCCGGTTTGTCTATAACTTTGTTCATAGACAAGATACAATTTTTATAATAGTATGATTTTGTAGTACTTGTTGAGTTCTATCATCTCCGATTCAGGTGGTCCGAACATATTTGATTCTAAAAGAAACTATGGCTACTTAGGAAGGCAGGTCTATGAACGATTTACAAGTATGCTTCAATGATTGGAAGGTCTTTGTGATATATGAATTTTGTGGAAGATCTGGTCTAAGAGACTGTAGTAGTTGGTTAATTCTTTGCAACGCGACGACAGGAGAACTGTCACAGTGCTGAAATGCCAGTTTACTAAAGTTGAGCGTCTCAACTCTCTGGCTATTTAGCCTATCCTCTTTTCATTTCGAGTTTCCTATTTCGACCCAATCCCGTTTCATTTGCTGCTTCTGTCAACGATTCTGGAATTTTTAGGCGATATCTTCTCTCCGATTAAATTTCTTCTTGATGTTCTCCGTTTGTTTTTCAAGTCTTTCAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTACTGTTTCTTGTCTACGA</pcr_primer_p1>
		<pcr_primer_p2>AAGCATACTTGTAAATCGTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGATTACTGTTTCTTGTCTACGAACAAAGTCATGCGGCTAATCTGAGCATGGTAACGCTTGTTTTTTTCCGCCCGGTTTGTCTATAACTTTGTTCATAGACAAGATACAATTTTTATAATAGTATGATTTTGTAGTACTTGTTGAGTTCTATCATCTCCGATTCAGGTGGTCCGAACATATTTGATTCTAAAAGAAACTATGGCTACTTAGGAAGGCAGGTCTATGAACGATTTACAAGTATGCTT</canonical_amplicon>
		<polymorphic_amplicon>GGATTACTGTTTCTTGTCTACGAACAAAGTCATGCGGCTAATCTGAGCATGGTAACGCTKGTTTTTTTCCGCCCGGTTTGTCTATAACTTTGTTCATAGACAAGATACAATTTTTATAATAGTATGATTTTGTAGTACTTGTTGAGTTCTATCATCTCCGATTCAGGTGGTCCGAACATATTTGATTCTAAAAGAAACTATGGCTACTTAGGAAGGCAGGTCTATGAACGATTTACAAGTATGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24303</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>112525</contig_pos>
        <strand></strand>
        <context>ctatcatctc[C/T]gattcaggtg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTTTATAATAGTATGATTTTGTAGTACTTGTTGAGTTCTATCATCTC</left_flank>
        <right_flank>GATTCAGGTGGTCCGAACATATTTGATTCTAAAAGAAACTATGGCTACTT</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAAAAAAGTTCTGCGGCATCGCGTGTTGAACAATGGAGGTCCCGCCTTCTCTCAGTTTGATTAGTCTGGAATTTTGGTATTCTTAATCTAGAAATCACAGGAATGGGTCTTGACCGATATTCAGACAGCGAGATGGGTAATATTGGCCTCTGAGTTGAGACTGTTGTGAGTGGGAAAAATATCAAAAGGTACTTCAATCATTGAAGTTCAATATATACTTGTAATCCAAGCCATGGCGGGCCTTCGCTGGGCCCGTCATAGTTTCTTTTAAAATCAAATTTTTTGCACTAACTTGATGATATGTATAACTCGCACTACGCACTACGAAACGATACCATTTGGATTACTGTTTCTTGTCTACGAACAAAGTCATGCGGCTAATCTGAGCATGGTAACGCTTGTTTTTTTCCGCCCGGTTTGTCTATAACTTTGTTCATAGACAAGATACAATTTTTATAATAGTATGATTTTGTAGTACTTGTTGAGTTCTATCATCTCCGATTCAGGTGGTCCGAACATATTTGATTCTAAAAGAAACTATGGCTACTTAGGAAGGCAGGTCTATGAACGATTTACAAGTATGCTTCAATGATTGGAAGGTCTTTGTGATATATGAATTTTGTGGAAGATCTGGTCTAAGAGACTGTAGTAGTTGGTTAATTCTTTGCAACGCGACGACAGGAGAACTGTCACAGTGCTGAAATGCCAGTTTACTAAAGTTGAGCGTCTCAACTCTCTGGCTATTTAGCCTATCCTCTTTTCATTTCGAGTTTCCTATTTCGACCCAATCCCGTTTCATTTGCTGCTTCTGTCAACGATTCTGGAATTTTTAGGCGATATCTTCTCTCCGATTAAATTTCTTCTTGATGTTCTCCGTTTGTTTTTCAAGTCTTTCAAACTTCATTATTCTTCACATGACATGACACGAAGGAGCCGAACCTCGGTACATTTTCCGGAAGTTTCAAGTGACATCTCCGTTTGTATTCATCTGACTGCCGT</canonical>
            <polymorphic>GTAAAAAAGTTCTGCGGCATCGCGTGTTGAACAATGGAGGTCCCGCCTTCTCTCAGTTTGATTAGTCTGGAATTTTGGTATTCTTAATCTAGAAATCACAGGAATGGGTCTTGACCGATATTCAGACAGCGAGATGGGTAATATTGGCCTCTGAGTTGAGACTGTTGTGAGTGGGAAAAATATCAAAAGGTACTTCAATCATTGAAGTTCAATATATACTTGTAATCCAAGCCATGGCGGGCCTTCGCTGGGCCCGTCATAGTTTCTTTTAAAATCAAATTTTTTGCACTAACTTGATGATATGTATAACTCGCACTACGCACTACGAAACGATACCATTTGGATTACTGTTTCTTGTCTACGAACAAAGTCATGCGGCTAATCTGAGCATGGTAACGCTTGTTTTTTTCCGCCCGGTTTGTCTATAACTTTGTTCATAGACAAGATACAATTTTTATAATAGTATGATTTTGTAGTACTTGTTGAGTTCTATCATCTCYGATTCAGGTGGTCCGAACATATTTGATTCTAAAAGAAACTATGGCTACTTAGGAAGGCAGGTCTATGAACGATTTACAAGTATGCTTCAATGATTGGAAGGTCTTTGTGATATATGAATTTTGTGGAAGATCTGGTCTAAGAGACTGTAGTAGTTGGTTAATTCTTTGCAACGCGACGACAGGAGAACTGTCACAGTGCTGAAATGCCAGTTTACTAAAGTTGAGCGTCTCAACTCTCTGGCTATTTAGCCTATCCTCTTTTCATTTCGAGTTTCCTATTTCGACCCAATCCCGTTTCATTTGCTGCTTCTGTCAACGATTCTGGAATTTTTAGGCGATATCTTCTCTCCGATTAAATTTCTTCTTGATGTTCTCCGTTTGTTTTTCAAGTCTTTCAAACTTCATTATTCTTCACATGACATGACACGAAGGAGCCGAACCTCGGTACATTTTCCGGAAGTTTCAAGTGACATCTCCGTTTGTATTCATCTGACTGCCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTACTGTTTCTTGTCTACGA</pcr_primer_p1>
		<pcr_primer_p2>AAGCATACTTGTAAATCGTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGATTACTGTTTCTTGTCTACGAACAAAGTCATGCGGCTAATCTGAGCATGGTAACGCTTGTTTTTTTCCGCCCGGTTTGTCTATAACTTTGTTCATAGACAAGATACAATTTTTATAATAGTATGATTTTGTAGTACTTGTTGAGTTCTATCATCTCCGATTCAGGTGGTCCGAACATATTTGATTCTAAAAGAAACTATGGCTACTTAGGAAGGCAGGTCTATGAACGATTTACAAGTATGCTT</canonical_amplicon>
		<polymorphic_amplicon>GGATTACTGTTTCTTGTCTACGAACAAAGTCATGCGGCTAATCTGAGCATGGTAACGCTTGTTTTTTTCCGCCCGGTTTGTCTATAACTTTGTTCATAGACAAGATACAATTTTTATAATAGTATGATTTTGTAGTACTTGTTGAGTTCTATCATCTCYGATTCAGGTGGTCCGAACATATTTGATTCTAAAAGAAACTATGGCTACTTAGGAAGGCAGGTCTATGAACGATTTACAAGTATGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24304</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>124804</contig_pos>
        <strand>+</strand>
        <context>TTCAATGAGG[G/T]TTCTTCAATG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCTATTGTTTTGTTTATTTTTAATCATTTAATTTGAAATTTCAATGAGG</left_flank>
        <right_flank>TTCTTCAATGGGGTAAGAGAACCAATCTTTTAATTTTGTTTGCCTTTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTGAGACAAATCGGTTAAATTCGAATAGGCAATTAAGCTTATTGAATTCACAGGCTTTGGTGAGAAAGCTAAATTTTTTAGTTTATATTACACGGACCGAGGGATGAAAAATGAAAATTCGCGAGCTTTACTAGAGAGAGTTATGGGATGTATATAAGACACACGCGCGGAGGGGGAGAGGGGCGCGCGAACCGGCGCCGTAATGACTCATCCATGTGATGACTCATCATGGGTGGTCTTCGGAGGGGTGTTCGGAGATTCTTTAAGAAAAGTCTGATCTTTTTAATTAGTTGTAGATTAATTTATATTTTGTATATTTATTTTAGAATTAATTAATTCCTTTCAGGTTTTATTAATTTATTTAATAATACATGTTTTTGAAGAAGTTGTAATTCTTGTATGTTTTGTCGGATAATTTATCAATATTTCCTTTATTTGTTTCCTGTTTCTATTGTTTTGTTTATTTTTAATCATTTAATTTGAAATTTCAATGAGGGTTCTTCAATGGGGTAAGAGAACCAATCTTTTAATTTTGTTTGCCTTTTAACTAGTCTGACTAAGGAAAATAACTTCAGTTANNNNNNNNNNNAAATTCGTAGAAAGTAATATCAAACTGAGTTACAAACAATTCGTATATTAAAAGAATTTTCAATTTATAAGGTCGCATCTGAATTAAAATACATAAATGTTACTGTTGCACGTGGTACTTTCTCATCGAGAATGTTGTTTGAGTGCAGCACACACCGAATAACGTCACGAATTGTGACTTCTTCAATTGGTTGAAACTTAGCACCAAAATATCCAGAGTGATCACCACCTTCAATGGAAATCGATACAATTGTCTCCTTCTTGGTGAAGGGGTTGTGAGATTTCAACAGCGCGACAATGTAATCACAAAAACATTTGCACCGGGCTCTGTCAAAATGATACTTCTTGACATCTGGAGTAGAAACTCGATCGACTTCATCTGTCCATTGCTTTTGTCAGCAGAAATTTT</canonical>
            <polymorphic>TGTTTGAGACAAATCGGTTAAATTCGAATAGGCAATTAAGCTTATTGAATTCACAGGCTTTGGTGAGAAAGCTAAATTTTTTAGTTTATATTACACGGACCGAGGGATGAAAAATGAAAATTCGCGAGCTTTACTAGAGAGAGTTATGGGATGTATATAAGACACACGCGCGGAGGGGGAGAGGGGCGCGCGAACCGGCGCCGTAATGACTCATCCATGTGATGACTCATCATGGGTGGTCTTCGGAGGGGTGTTCGGAGATTCTTTAAGAAAAGTCTGATCTTTTTAATTAGTTGTAGATTAATTTATATTTTGTATATTTATTTTAGAATTAATTAATTCCTTTCAGGTTTTATTAATTTATTTAATAATACATGTTTTTGAAGAAGTTGTAATTCTTGTATGTTTTGTCGGATAATTTATCAATATTTCCTTTATTTGTTTCCTGTTTCTATTGTTTTGTTTATTTTTAATCATTTAATTTGAAATTTCAATGAGGKTTCTTCAATGGGGTAAGAGAACCAATCTTTTAATTTTGTTTGCCTTTTAACTAGTCTGACTAAGGAAAATAACTTCAGTTANNNNNNNNNNNAAATTCGTAGAAAGTAATATCAAACTGAGTTACAAACAATTCGTATATTAAAAGAATTTTCAATTTATAAGGTCGCATCTGAATTAAAATACATAAATGTTACTGTTGCACGTGGTACTTTCTCATCGAGAATGTTGTTTGAGTGCAGCACACACCGAATAACGTCACGAATTGTGACTTCTTCAATTGGTTGAAACTTAGCACCAAAATATCCAGAGTGATCACCACCTTCAATGGAAATCGATACAATTGTCTCCTTCTTGGTGAAGGGGTTGTGAGATTTCAACAGCGCGACAATGTAATCACAAAAACATTTGCACCGGGCTCTGTCAAAATGATACTTCTTGACATCTGGAGTAGAAACTCGATCGACTTCATCTGTCCATTGCTTTTGTCAGCAGAAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCCTTTATTTGTTTCCTGTT</pcr_primer_p1>
		<pcr_primer_p2>AATTCAGATGCGACCTTATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTCCTTTATTTGTTTCCTGTTTCTATTGTTTTGTTTATTTTTAATCATTTAATTTGAAATTTCAATGAGGGTTCTTCAATGGGGTAAGAGAACCAATCTTTTAATTTTGTTTGCCTTTTAACTAGTCTGACTAAGGAAAATAACTTCAGTTANNNNNNNNNNNAAATTCGTAGAAAGTAATATCAAACTGAGTTACAAACAATTCGTATATTAAAAGAATTTTCAATTTATAAGGTCGCATCTGAATT</canonical_amplicon>
		<polymorphic_amplicon>ATTTCCTTTATTTGTTTCCTGTTTCTATTGTTTTGTTTATTTTTAATCATTTAATTTGAAATTTCAATGAGGKTTCTTCAATGGGGTAAGAGAACCAATCTTTTAATTTTGTTTGCCTTTTAACTAGTCTGACTAAGGAAAATAACTTCAGTTANNNNNNNNNNNAAATTCGTAGAAAGTAATATCAAACTGAGTTACAAACAATTCGTATATTAAAAGAATTTTCAATTTATAAGGTCGCATCTGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24305</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>178620</contig_pos>
        <strand>+</strand>
        <context>ATTATACTTT[G/T]GTTGAGGGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCTGATGATTTGATTTCTTACTTCTTATTGGTTCTTATGATTATACTTT</left_flank>
        <right_flank>GTTGAGGGCTCTTTCGGGTGCCGATAAACATCTTTTTGTGTTTTATTGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTTCTAACTTGAATTGCCTGCAATCTTCTTTTCCCGTCCCTTCTCTAGTTCTCTTCTTCTTCGCCGTCTGGCCCCGCCCCTTTCTTTCCTGACTCCTCCTCCTATTAGTAGTTTTTCTTTCGTTTACCAGTATCGCCTCTTTGTTTTTCGATTTTCCAAAAGTTTTTTTTTTACCTAAAAAATCGGTGGAATCTCGAAACATCAATAAACAAAGAAAGCGAGCAGCACAAAGTTGGCACTTGCTCTCGAAAACTCTCTCTTTTTTCCGCGCACGGCTTATCATTCTCATCAACTCATCAACTCTCTGCTAATCATTTGCCCTCTTTTCCCTCATTTTTTCCGCTTACTGACCGGTCTTTCCGCTTCATATCTAGGTACTTGTCTTCATTAGAGTTTTCAATGAGCTCTTGCTCTTTTTTTTGCTCTTTTTCGCGCCTAGATACATTTTCTGATGATTTGATTTCTTACTTCTTATTGGTTCTTATGATTATACTTTTGTTGAGGGCTCTTTCGGGTGCCGATAAACATCTTTTTGTGTTTTATTGATTTGTTCCTTTCTCTTTTTTTTTTTGAGATTACCTAAAATATCAAATGGAAGTTTGAAACTCTGAAGTGTTCAAAATGATCTTTCCGGAATTTGGAAACTTTGGAATATTCTGATTTCACAGTTTTCAGAATTTTGAAACGTCGGAATAATCCTATTTTAACAAATTTCAAAATTTTAAAACTTCGGAATATTCCGATTTGAAAATTTTAACAATTTTTGAAATCTCACTTTCCTACCACAAAAGTAATTTTTTCAATCCCTTCATCACTGTCAGCAGCTTCGAATTTGGTTTTTTTTTTAAACTACCATATCCCAAAAACAAAAAAATCCCATAAAACTAATAAAATCATATGAAGCTCTTTCCTATGTTATTTCAACTTAAAACCACATTGCTTCTCATCCATCAATCTCTTTAAATTATCTCTGTTGTCTCCTAACTTTTCGCAATCT</canonical>
            <polymorphic>GAATTTCTAACTTGAATTGCCTGCAATCTTCTTTTCCCGTCCCTTCTCTAGTTCTCTTCTTCTTCGCCGTCTGGCCCCGCCCCTTTCTTTCCTGACTCCTCCTCCTATTAGTAGTTTTTCTTTCGTTTACCAGTATCGCCTCTTTGTTTTTCGATTTTCCAAAAGTTTTTTTTTTACCTAAAAAATCGGTGGAATCTCGAAACATCAATAAACAAAGAAAGCGAGCAGCACAAAGTTGGCACTTGCTCTCGAAAACTCTCTCTTTTTTCCGCGCACGGCTTATCATTCTCATCAACTCATCAACTCTCTGCTAATCATTTGCCCTCTTTTCCCTCATTTTTTCCGCTTACTGACCGGTCTTTCCGCTTCATATCTAGGTACTTGTCTTCATTAGAGTTTTCAATGAGCTCTTGCTCTTTTTTTTGCTCTTTTTCGCGCCTAGATACATTTTCTGATGATTTGATTTCTTACTTCTTATTGGTTCTTATGATTATACTTTKGTTGAGGGCTCTTTCGGGTGCCGATAAACATCTTTTTGTGTTTTATTGATTTGTTCCTTTCTCTTTTTTTTTTTGAGATTACCTAAAATATCAAATGGAAGTTTGAAACTCTGAAGTGTTCAAAATGATCTTTCCGGAATTTGGAAACTTTGGAATATTCTGATTTCACAGTTTTCAGAATTTTGAAACGTCGGAATAATCCTATTTTAACAAATTTCAAAATTTTAAAACTTCGGAATATTCCGATTTGAAAATTTTAACAATTTTTGAAATCTCACTTTCCTACCACAAAAGTAATTTTTTCAATCCCTTCATCACTGTCAGCAGCTTCGAATTTGGTTTTTTTTTTAAACTACCATATCCCAAAAACAAAAAAATCCCATAAAACTAATAAAATCATATGAAGCTCTTTCCTATGTTATTTCAACTTAAAACCACATTGCTTCTCATCCATCAATCTCTTTAAATTATCTCTGTTGTCTCCTAACTTTTCGCAATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCTTCATATCTAGGTACTTGTC</pcr_primer_p1>
		<pcr_primer_p2>AAACTTCCATTTGATATTTTAGGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CGCTTCATATCTAGGTACTTGTCTTCATTAGAGTTTTCAATGAGCTCTTGCTCTTTTTTTTGCTCTTTTTCGCGCCTAGATACATTTTCTGATGATTTGATTTCTTACTTCTTATTGGTTCTTATGATTATACTTTTGTTGAGGGCTCTTTCGGGTGCCGATAAACATCTTTTTGTGTTTTATTGATTTGTTCCTTTCTCTTTTTTTTTTTGAGATTACCTAAAATATCAAATGGAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>CGCTTCATATCTAGGTACTTGTCTTCATTAGAGTTTTCAATGAGCTCTTGCTCTTTTTTTTGCTCTTTTTCGCGCCTAGATACATTTTCTGATGATTTGATTTCTTACTTCTTATTGGTTCTTATGATTATACTTTKGTTGAGGGCTCTTTCGGGTGCCGATAAACATCTTTTTGTGTTTTATTGATTTGTTCCTTTCTCTTTTTTTTTTTGAGATTACCTAAAATATCAAATGGAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24306</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>178671</contig_pos>
        <strand>+</strand>
        <context>TTTTATTGAT[C/T]TGTTCCTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTGAGGGCTCTTTCGGGTGCCGATAAACATCTTTTTGTGTTTTATTGAT</left_flank>
        <right_flank>TGTTCCTTTCTCTTTTTTTTTTTGAGATTACCTAAAATATCAAATGGAAG</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTCTTCTTCTTCGCCGTCTGGCCCCGCCCCTTTCTTTCCTGACTCCTCCTCCTATTAGTAGTTTTTCTTTCGTTTACCAGTATCGCCTCTTTGTTTTTCGATTTTCCAAAAGTTTTTTTTTTACCTAAAAAATCGGTGGAATCTCGAAACATCAATAAACAAAGAAAGCGAGCAGCACAAAGTTGGCACTTGCTCTCGAAAACTCTCTCTTTTTTCCGCGCACGGCTTATCATTCTCATCAACTCATCAACTCTCTGCTAATCATTTGCCCTCTTTTCCCTCATTTTTTCCGCTTACTGACCGGTCTTTCCGCTTCATATCTAGGTACTTGTCTTCATTAGAGTTTTCAATGAGCTCTTGCTCTTTTTTTTGCTCTTTTTCGCGCCTAGATACATTTTCTGATGATTTGATTTCTTACTTCTTATTGGTTCTTATGATTATACTTTTGTTGAGGGCTCTTTCGGGTGCCGATAAACATCTTTTTGTGTTTTATTGATTTGTTCCTTTCTCTTTTTTTTTTTGAGATTACCTAAAATATCAAATGGAAGTTTGAAACTCTGAAGTGTTCAAAATGATCTTTCCGGAATTTGGAAACTTTGGAATATTCTGATTTCACAGTTTTCAGAATTTTGAAACGTCGGAATAATCCTATTTTAACAAATTTCAAAATTTTAAAACTTCGGAATATTCCGATTTGAAAATTTTAACAATTTTTGAAATCTCACTTTCCTACCACAAAAGTAATTTTTTCAATCCCTTCATCACTGTCAGCAGCTTCGAATTTGGTTTTTTTTTTAAACTACCATATCCCAAAAACAAAAAAATCCCATAAAACTAATAAAATCATATGAAGCTCTTTCCTATGTTATTTCAACTTAAAACCACATTGCTTCTCATCCATCAATCTCTTTAAATTATCTCTGTTGTCTCCTAACTTTTCGCAATCTTCCAACAATTTTAGTTTCCGTTAAAATTCCCTTTGTTCTTCTTCTTTTTGC</canonical>
            <polymorphic>TTCTCTTCTTCTTCGCCGTCTGGCCCCGCCCCTTTCTTTCCTGACTCCTCCTCCTATTAGTAGTTTTTCTTTCGTTTACCAGTATCGCCTCTTTGTTTTTCGATTTTCCAAAAGTTTTTTTTTTACCTAAAAAATCGGTGGAATCTCGAAACATCAATAAACAAAGAAAGCGAGCAGCACAAAGTTGGCACTTGCTCTCGAAAACTCTCTCTTTTTTCCGCGCACGGCTTATCATTCTCATCAACTCATCAACTCTCTGCTAATCATTTGCCCTCTTTTCCCTCATTTTTTCCGCTTACTGACCGGTCTTTCCGCTTCATATCTAGGTACTTGTCTTCATTAGAGTTTTCAATGAGCTCTTGCTCTTTTTTTTGCTCTTTTTCGCGCCTAGATACATTTTCTGATGATTTGATTTCTTACTTCTTATTGGTTCTTATGATTATACTTTTGTTGAGGGCTCTTTCGGGTGCCGATAAACATCTTTTTGTGTTTTATTGATYTGTTCCTTTCTCTTTTTTTTTTTGAGATTACCTAAAATATCAAATGGAAGTTTGAAACTCTGAAGTGTTCAAAATGATCTTTCCGGAATTTGGAAACTTTGGAATATTCTGATTTCACAGTTTTCAGAATTTTGAAACGTCGGAATAATCCTATTTTAACAAATTTCAAAATTTTAAAACTTCGGAATATTCCGATTTGAAAATTTTAACAATTTTTGAAATCTCACTTTCCTACCACAAAAGTAATTTTTTCAATCCCTTCATCACTGTCAGCAGCTTCGAATTTGGTTTTTTTTTTAAACTACCATATCCCAAAAACAAAAAAATCCCATAAAACTAATAAAATCATATGAAGCTCTTTCCTATGTTATTTCAACTTAAAACCACATTGCTTCTCATCCATCAATCTCTTTAAATTATCTCTGTTGTCTCCTAACTTTTCGCAATCTTCCAACAATTTTAGTTTCCGTTAAAATTCCCTTTGTTCTTCTTCTTTTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCTTCATATCTAGGTACTTGTC</pcr_primer_p1>
		<pcr_primer_p2>TTCAAACTTCCATTTGATATTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CGCTTCATATCTAGGTACTTGTCTTCATTAGAGTTTTCAATGAGCTCTTGCTCTTTTTTTTGCTCTTTTTCGCGCCTAGATACATTTTCTGATGATTTGATTTCTTACTTCTTATTGGTTCTTATGATTATACTTTTGTTGAGGGCTCTTTCGGGTGCCGATAAACATCTTTTTGTGTTTTATTGATTTGTTCCTTTCTCTTTTTTTTTTTGAGATTACCTAAAATATCAAATGGAAGTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>CGCTTCATATCTAGGTACTTGTCTTCATTAGAGTTTTCAATGAGCTCTTGCTCTTTTTTTTGCTCTTTTTCGCGCCTAGATACATTTTCTGATGATTTGATTTCTTACTTCTTATTGGTTCTTATGATTATACTTTTGTTGAGGGCTCTTTCGGGTGCCGATAAACATCTTTTTGTGTTTTATTGATYTGTTCCTTTCTCTTTTTTTTTTTGAGATTACCTAAAATATCAAATGGAAGTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24307</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>223713</contig_pos>
        <strand>+</strand>
        <context>TTATCAATAA[C/T]ATGTTTATGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCGCTTTGTGCACAGGGCTTCACATTGCAGACGTGGCATTTATCAATAA</left_flank>
        <right_flank>ATGTTTATGGGTTGATTATTGCAAATAAACCTTTTGATCGAATAATTTAC</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCAGTGGGAGATCAATACTTATGTCTGGACCAAGTCAAAGAAGAAGTAGGAAAAGTTCCACCACCTCCTCCACAAACTGCAAACGCTGTTCCGGTGCCTGCTCCTCCACCACCTCCACCACCCGCAGGGACGTTCGTCAAAGTTCCTGCACCACCGCCGGGGATTCAAAAAGATAGGGACACTTCCAAACAGTATGGTTTTAAAGGGTCATAAAAATCTTATTAGTACTAATTTCAGATCAACAGTATCTATTGTTAAGAAGTCTAAAGCAACGGATGTTTCGACGTCGACCGCTCCTACATCTGAGAAAGAAGACAAGAAACCAGGGAATGCCACTGTAGTAGGTTTATGGTATCACTCGAGAAATTATAGCTCATTAATTTTCAGATCCGTATCATAATTGGAGTTACCAACCTCATCTTTCTGATTATCCTTATTTTCTGGGGTCTCGCTTTGTGCACAGGGCTTCACATTGCAGACGTGGCATTTATCAATAACATGTTTATGGGTTGATTATTGCAAATAAACCTTTTGATCGAATAATTTACTTTTTATGTGATTTGATTTCTGAGATTTATACAGAATGAACGATATTAAAACTACTTTGTTTGAAAGGTGTTTCTTGGTTTTCTTTAATCTTCTGTGTTTGTTTATTCATTGATGAATCCGACCGAGTTTTTTTCGATTCTAAAACCTTTCACAATATTAAGGATCTAACTTATCCTTGCTATCTATAAACTTTGTTTATTGAATTATGATATTCTTGACCGCTAGCCAGACCTAAATGTAATTTGATGCAAACCCAATGTTGTTTATAATAGGACGCCCGCTCCTCCTACCCCGAATGCGTTGTCCGCGCCGATCCTCAAGAGAACCGGTATTTCCTTTTCATCGTATTTTATTGATTTTCTCGGGCGAAATAGAGAAGAATTTTTTCGTCTACTGGTGACTCATTTGACTTATCGAAGTGTATATTTATTGAATTACAAATTTTTAAA</canonical>
            <polymorphic>TTTCAGTGGGAGATCAATACTTATGTCTGGACCAAGTCAAAGAAGAAGTAGGAAAAGTTCCACCACCTCCTCCACAAACTGCAAACGCTGTTCCGGTGCCTGCTCCTCCACCACCTCCACCACCCGCAGGGACGTTCGTCAAAGTTCCTGCACCACCGCCGGGGATTCAAAAAGATAGGGACACTTCCAAACAGTATGGTTTTAAAGGGTCATAAAAATCTTATTAGTACTAATTTCAGATCAACAGTATCTATTGTTAAGAAGTCTAAAGCAACGGATGTTTCGACGTCGACCGCTCCTACATCTGAGAAAGAAGACAAGAAACCAGGGAATGCCACTGTAGTAGGTTTATGGTATCACTCGAGAAATTATAGCTCATTAATTTTCAGATCCGTATCATAATTGGAGTTACCAACCTCATCTTTCTGATTATCCTTATTTTCTGGGGTCTCGCTTTGTGCACAGGGCTTCACATTGCAGACGTGGCATTTATCAATAAYATGTTTATGGGTTGATTATTGCAAATAAACCTTTTGATCGAATAATTTACTTTTTATGTGATTTGATTTCTGAGATTTATACAGAATGAACGATATTAAAACTACTTTGTTTGAAAGGTGTTTCTTGGTTTTCTTTAATCTTCTGTGTTTGTTTATTCATTGATGAATCCGACCGAGTTTTTTTCGATTCTAAAACCTTTCACAATATTAAGGATCTAACTTATCCTTGCTATCTATAAACTTTGTTTATTGAATTATGATATTCTTGACCGCTAGCCAGACCTAAATGTAATTTGATGCAAACCCAATGTTGTTTATAATAGGACGCCCGCTCCTCCTACCCCGAATGCGTTGTCCGCGCCGATCCTCAAGAGAACCGGTATTTCCTTTTCATCGTATTTTATTGATTTTCTCGGGCGAAATAGAGAAGAATTTTTTCGTCTACTGGTGACTCATTTGACTTATCGAAGTGTATATTTATTGAATTACAAATTTTTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACCTCATCTTTCTGATTATCCT</pcr_primer_p1>
		<pcr_primer_p2>TCAATGAATAAACAAACACAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACCTCATCTTTCTGATTATCCTTATTTTCTGGGGTCTCGCTTTGTGCACAGGGCTTCACATTGCAGACGTGGCATTTATCAATAACATGTTTATGGGTTGATTATTGCAAATAAACCTTTTGATCGAATAATTTACTTTTTATGTGATTTGATTTCTGAGATTTATACAGAATGAACGATATTAAAACTACTTTGTTTGAAAGGTGTTTCTTGGTTTTCTTTAATCTTCTGTGTTTGTTTATTCATTGA</canonical_amplicon>
		<polymorphic_amplicon>AACCTCATCTTTCTGATTATCCTTATTTTCTGGGGTCTCGCTTTGTGCACAGGGCTTCACATTGCAGACGTGGCATTTATCAATAAYATGTTTATGGGTTGATTATTGCAAATAAACCTTTTGATCGAATAATTTACTTTTTATGTGATTTGATTTCTGAGATTTATACAGAATGAACGATATTAAAACTACTTTGTTTGAAAGGTGTTTCTTGGTTTTCTTTAATCTTCTGTGTTTGTTTATTCATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24308</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>254717</contig_pos>
        <strand></strand>
        <context>TTCACCTATA[C/T]TTATGTTCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACGTAAAACCAAAACGGGTCCATGTTCGTATCGCCCTATTTCACCTATA</left_flank>
        <right_flank>TTATGTTCTTCTTCGTTTTTCCTTTTTCATCCTTCATCCTCTTTTTCACA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAACTTCCACGTGGCTCTTCCTTCTAGGTCAAACTCTCGGGAGGTCACAAAAAGGAACCAAAGTGTGTGAGGGTGTTGCTTCTTCTCCTTCTGTTGGGCAATTTCCCGTGAATTCCGGAAGTATTCGCACGCCTTCTTGCTCCATTCAATCTTTTCTCTTTTGCTCCTAACCTCCCACCTATTTCTAAAAACTCCAATTGTTATCCTCTTTTTTCAACCAATTTCAACATTCTTGCTCATTCGACCGGGATTACACCTTTTTGCACAATAGTCCAGTTCTTCTCTAACGTCGCCTTCTTCTTCTTCTTTTGAACCTTTCCTGCCCGTTTGTTTCCTCTTCCTCAAAAGTGTCCTCCTTGTCCATTCTCCATATTGAATTTCACAGAAATTATTCACTTCTTCTTTCTTTTTGATCTCTCTTTCTCTTTCTCTCCACTCTGCTCTCGAAACGTAAAACCAAAACGGGTCCATGTTCGTATCGCCCTATTTCACCTATACTTATGTTCTTCTTCGTTTTTCCTTTTTCATCCTTCATCCTCTTTTTCACACCGCCCCGAAACCACCAAAAAAAGTGGGTGGGGTTTTCGAAACGTCGTTGGGACGGATGTGTATACAACTTATCCTTGTTTTCCATCGAGGGCTCTTCTTCTTCTTTTCGTCTTCAATTTTTCGAATCGTTGCCACGTCATCATCACAAATTCATGAACAACACACCACCCATTTATTTGTCTAGAAGAAGACCAGAAACTCATATTTCACATTTTTCGGAGGTGCCGTTTTCGGGGAAGACACCGAAAATTATACGATGGAATTTTTGAGATAGGCGTGGAGCTTCCTTTGAATTTTCAGAAGCAGTTTTAGTTGAGAAAAAACCAACATTTACGAATTCAATGAAATGGAAAGCATCTTTGTCATGCATACCGTAAAACCTGTAATAGAAGGACCCCCACACTGTCAAACTTGATTTCAATTATCTCGGCTTCTATTAGAGATATCAA</canonical>
            <polymorphic>CAAAACTTCCACGTGGCTCTTCCTTCTAGGTCAAACTCTCGGGAGGTCACAAAAAGGAACCAAAGTGTGTGAGGGTGTTGCTTCTTCTCCTTCTGTTGGGCAATTTCCCGTGAATTCCGGAAGTATTCGCACGCCTTCTTGCTCCATTCAATCTTTTCTCTTTTGCTCCTAACCTCCCACCTATTTCTAAAAACTCCAATTGTTATCCTCTTTTTTCAACCAATTTCAACATTCTTGCTCATTCGACCGGGATTACACCTTTTTGCACAATAGTCCAGTTCTTCTCTAACGTCGCCTTCTTCTTCTTCTTTTGAACCTTTCCTGCCCGTTTGTTTCCTCTTCCTCAAAAGTGTCCTCCTTGTCCATTCTCCATATTGAATTTCACAGAAATTATTCACTTCTTCTTTCTTTTTGATCTCTCTTTCTCTTTCTCTCCACTCTGCTCTCGAAACGTAAAACCAAAACGGGTCCATGTTCGTATCGCCCTATTTCACCTATAYTTATGTTCTTCTTCGTTTTTCCTTTTTCATCCTTCATCCTCTTTTTCACACCGCCCCGAAACCACCAAAAAAAGTGGGTGGGGTTTTCGAAACGTCGTTGGGACGGATGTGTATACAACTTATCCTTGTTTTCCATCGAGGGCTCTTCTTCTTCTTTTCGTCTTCAATTTTTCGAATCGTTGCCACGTCATCATCACAAATTCATGAACAACACACCACCCATTTATTTGTCTAGAAGAAGACCAGAAACTCATATTTCACATTTTTCGGAGGTGCCGTTTTCGGGGAAGACACCGAAAATTATACGATGGAATTTTTGAGATAGGCGTGGAGCTTCCTTTGAATTTTCAGAAGCAGTTTTAGTTGAGAAAAAACCAACATTTACGAATTCAATGAAATGGAAAGCATCTTTGTCATGCATACCGTAAAACCTGTAATAGAAGGACCCCCACACTGTCAAACTTGATTTCAATTATCTCGGCTTCTATTAGAGATATCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCACTTCTTCTTTCTTTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>TGGAAAACAAGGATAAGTTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTCACTTCTTCTTTCTTTTTGATCTCTCTTTCTCTTTCTCTCCACTCTGCTCTCGAAACGTAAAACCAAAACGGGTCCATGTTCGTATCGCCCTATTTCACCTATACTTATGTTCTTCTTCGTTTTTCCTTTTTCATCCTTCATCCTCTTTTTCACACCGCCCCGAAACCACCAAAAAAAGTGGGTGGGGTTTTCGAAACGTCGTTGGGACGGATGTGTATACAACTTATCCTTGTTTTCCA</canonical_amplicon>
		<polymorphic_amplicon>TTCACTTCTTCTTTCTTTTTGATCTCTCTTTCTCTTTCTCTCCACTCTGCTCTCGAAACGTAAAACCAAAACGGGTCCATGTTCGTATCGCCCTATTTCACCTATAYTTATGTTCTTCTTCGTTTTTCCTTTTTCATCCTTCATCCTCTTTTTCACACCGCCCCGAAACCACCAAAAAAAGTGGGTGGGGTTTTCGAAACGTCGTTGGGACGGATGTGTATACAACTTATCCTTGTTTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24309</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>264459</contig_pos>
        <strand></strand>
        <context>acccttttaa[C/T]ttttaacttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGACAATTTGAACAACTACCGTGAAACCTGTAATAGAAGAACCCTTTTAA</left_flank>
        <right_flank>TTTTAACTTTGAGCCCATTTACCTCGGTCCCTTGGAAAGACATCAAAACG</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGAGCCCCGATACACAATCGCAGTGTGCACTTTTGTAAAATGCATCACCAGTTCCACAACATCTTGTGCTCAGGTACTTCCTTTGGTAAGAAATGGTATCTCCGTGGGAGAAAAGAACAAAAAAGGATTGCAGCCAGTAGCCATATACCGATACTTCATTGTCGTCAGAAACAGAAAAATGCCATCGTGGTTTGTAGTCGTGGTCCATTCGTTCATTTCGATTGTCTTTGTGAGTAAAAAGAACCAAAAGAGGGATTAAAATCGAACAACACTTCGTCTTCATTTCCCTCTTGAGGGTAGAAAGTCGAAAGAAAACAAAAACAACAATATTTTCAGTTTGTGATTGCTATTCTGAACTTTCCATTGGGAGAATTTGAAACAAATGACCAATGTGCAATACTTCGATTCAGTAAAGTAATGGAAGCAGTTAGGGTAAGAACTGAGGAGTGACAATTTGAACAACTACCGTGAAACCTGTAATAGAAGAACCCTTTTAACTTTTAACTTTGAGCCCATTTACCTCGGTCCCTTGGAAAGACATCAAAACGTGGTCAACTAAGAAAATGTACTTTATAATACCAAAAATATTAAGGTCAGTTAACCCATTTATGATATCTTTCACAGGAATCAAGATAAACTGGCTCAAAGTTGACGGTTCTGGAGGGGTCATTCTATTAGAGTCTTTACGGTATTTCAAAAGCTGTCGGATCAGGAAGAAAATGAAAACAAAAAACTAGACACCTTCTGAAATTCTTGTTCAAAAAAATTTTGCACTTCAAGGGCCTCACACTTCTTCCATTGAGAAAATTCGTAACAGATGAAAGAGGCAACAGAAAAAGAATTTTTTAAACTTCTACATTTCACTCCACTTAATAAATCTTATTGAAAACTTTGAAAATGCATTTTTTATGAAACTACCGTTCTTGAAACTTCTTCGATTTTTGGGAAAGTTTTCAAAGCTCAGAACATTTCACAGAAGTTTCAATTTCTCAATAAAC</canonical>
            <polymorphic>GTTGAGCCCCGATACACAATCGCAGTGTGCACTTTTGTAAAATGCATCACCAGTTCCACAACATCTTGTGCTCAGGTACTTCCTTTGGTAAGAAATGGTATCTCCGTGGGAGAAAAGAACAAAAAAGGATTGCAGCCAGTAGCCATATACCGATACTTCATTGTCGTCAGAAACAGAAAAATGCCATCGTGGTTTGTAGTCGTGGTCCATTCGTTCATTTCGATTGTCTTTGTGAGTAAAAAGAACCAAAAGAGGGATTAAAATCGAACAACACTTCGTCTTCATTTCCCTCTTGAGGGTAGAAAGTCGAAAGAAAACAAAAACAACAATATTTTCAGTTTGTGATTGCTATTCTGAACTTTCCATTGGGAGAATTTGAAACAAATGACCAATGTGCAATACTTCGATTCAGTAAAGTAATGGAAGCAGTTAGGGTAAGAACTGAGGAGTGACAATTTGAACAACTACCGTGAAACCTGTAATAGAAGAACCCTTTTAAYTTTTAACTTTGAGCCCATTTACCTCGGTCCCTTGGAAAGACATCAAAACGTGGTCAACTAAGAAAATGTACTTTATAATACCAAAAATATTAAGGTCAGTTAACCCATTTATGATATCTTTCACAGGAATCAAGATAAACTGGCTCAAAGTTGACGGTTCTGGAGGGGTCATTCTATTAGAGTCTTTACGGTATTTCAAAAGCTGTCGGATCAGGAAGAAAATGAAAACAAAAAACTAGACACCTTCTGAAATTCTTGTTCAAAAAAATTTTGCACTTCAAGGGCCTCACACTTCTTCCATTGAGAAAATTCGTAACAGATGAAAGAGGCAACAGAAAAAGAATTTTTTAAACTTCTACATTTCACTCCACTTAATAAATCTTATTGAAAACTTTGAAAATGCATTTTTTATGAAACTACCGTTCTTGAAACTTCTTCGATTTTTGGGAAAGTTTTCAAAGCTCAGAACATTTCACAGAAGTTTCAATTTCTCAATAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGAGTGACAATTTGAACAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTCATTTTCTTCCTGATCC</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>GAGGAGTGACAATTTGAACAACTACCGTGAAACCTGTAATAGAAGAACCCTTTTAACTTTTAACTTTGAGCCCATTTACCTCGGTCCCTTGGAAAGACATCAAAACGTGGTCAACTAAGAAAATGTACTTTATAATACCAAAAATATTAAGGTCAGTTAACCCATTTATGATATCTTTCACAGGAATCAAGATAAACTGGCTCAAAGTTGACGGTTCTGGAGGGGTCATTCTATTAGAGTCTTTACGGTATTTCAAAAGCTGTCGGATCAGGAAGAAAATGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAGGAGTGACAATTTGAACAACTACCGTGAAACCTGTAATAGAAGAACCCTTTTAAYTTTTAACTTTGAGCCCATTTACCTCGGTCCCTTGGAAAGACATCAAAACGTGGTCAACTAAGAAAATGTACTTTATAATACCAAAAATATTAAGGTCAGTTAACCCATTTATGATATCTTTCACAGGAATCAAGATAAACTGGCTCAAAGTTGACGGTTCTGGAGGGGTCATTCTATTAGAGTCTTTACGGTATTTCAAAAGCTGTCGGATCAGGAAGAAAATGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24310</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>266543</contig_pos>
        <strand>+</strand>
        <context>TCAAAATTTC[A/T]TTTTTTTTTW</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTGTTTTGCATGAAAACCAACTTCTACTTATCGATTTCTTCAAAATTTC</left_flank>
        <right_flank>TTTTTTTTTAAATTTCGTTTTCTCACTCAATTTGTTTTCAGTCCGGCGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGGACAATTAATTTTTTATGAGCATCCTTTGGATGCTCGTTCACTTTTGTTCTCAAGTTTTTGGTCAAAACATTTTTGTTTCATTCATTTTATAAACTCGTCTTAATCCTATTCAAAAGATAAAATATAATCCCCCAATAAAAGGTGTCTTTATGAAATAAATGCCTTCTTTATGAATAACTTTTTTGTGGGACGGCTGAGTTAGTCTGCACTAAATAAGACAATGTTTGAACAGTGTCCTTCCTGCTGTGTCTTTTAATGTAAAAAGACCGCAATGCCGCCCGATCTCTGCTTGTCTGCTTCTCGTTTTTCTTTCTCTTCTTCACATTTCTTGCCTCCTGATGATTCATCACTCTAAACTTTTACAGCTTCCCTTCTTTTCCTTCGTTTTCGTTTTATCTAGCTTTTGAGTTAGAGAAAAGCCTAATTGCGGAGAACTCTTCGCTATCTGTTTTGCATGAAAACCAACTTCTACTTATCGATTTCTTCAAAATTTCTTTTTTTTTTAAATTTCGTTTTCTCACTCAATTTGTTTTCAGTCCGGCGGGTCCATAATATCGGATGTCTTGTCGAGATTGTACAAGAAAAGGAGGATGTGTATACACAACATTTTGGGTAATTTTTTTTAAAGCTTCAATTTGCTGTTTCGAAATTTTTCCATTCAATTTGACTCCTATAAAAATTACATCAATAGAAAAAAAACAACTATGCGTTGAGGGAAATTATTGGAGGAAATTGAAAAGTGGAAGAATCGAAAAGACCCCAAATGAAAAAGCGATTCAGTTTCCTTCTCGAAATTGAATTGAATTTTTTCGGGTCGGACTCACATACGCACTGATACTCTTTTCTAACGCCAATTCAACGCAATCATCATTCTTGAATGTCCGTTGTCAGAATGCGTCGTTGATGATAAGGATCAAAATTGTGAAGCGAATTGATATCTGTTGCGTGTTGCGGTTGCGCGGTCTTGCCGAACATGACCCAAATCGAATTCTGAC</canonical>
            <polymorphic>CGAGGACAATTAATTTTTTATGAGCATCCTTTGGATGCTCGTTCACTTTTGTTCTCAAGTTTTTGGTCAAAACATTTTTGTTTCATTCATTTTATAAACTCGTCTTAATCCTATTCAAAAGATAAAATATAATCCCCCAATAAAAGGTGTCTTTATGAAATAAATGCCTTCTTTATGAATAACTTTTTTGTGGGACGGCTGAGTTAGTCTGCACTAAATAAGACAATGTTTGAACAGTGTCCTTCCTGCTGTGTCTTTTAATGTAAAAAGACCGCAATGCCGCCCGATCTCTGCTTGTCTGCTTCTCGTTTTTCTTTCTCTTCTTCACATTTCTTGCCTCCTGATGATTCATCACTCTAAACTTTTACAGCTTCCCTTCTTTTCCTTCGTTTTCGTTTTATCTAGCTTTTGAGTTAGAGAAAAGCCTAATTGCGGAGAACTCTTCGCTATCTGTTTTGCATGAAAACCAACTTCTACTTATCGATTTCTTCAAAATTTCWTTTTTTTTTAAATTTCGTTTTCTCACTCAATTTGTTTTCAGTCCGGCGGGTCCATAATATCGGATGTCTTGTCGAGATTGTACAAGAAAAGGAGGATGTGTATACACAACATTTTGGGTAATTTTTTTTAAAGCTTCAATTTGCTGTTTCGAAATTTTTCCATTCAATTTGACTCCTATAAAAATTACATCAATAGAAAAAAAACAACTATGCGTTGAGGGAAATTATTGGAGGAAATTGAAAAGTGGAAGAATCGAAAAGACCCCAAATGAAAAAGCGATTCAGTTTCCTTCTCGAAATTGAATTGAATTTTTTCGGGTCGGACTCACATACGCACTGATACTCTTTTCTAACGCCAATTCAACGCAATCATCATTCTTGAATGTCCGTTGTCAGAATGCGTCGTTGATGATAAGGATCAAAATTGTGAAGCGAATTGATATCTGTTGCGTGTTGCGGTTGCGCGGTCTTGCCGAACATGACCCAAATCGAATTCTGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAACTTTTACAGCTTCCCTTCT</pcr_primer_p1>
		<pcr_primer_p2>TGTATACACATCCTCCTTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAAACTTTTACAGCTTCCCTTCTTTTCCTTCGTTTTCGTTTTATCTAGCTTTTGAGTTAGAGAAAAGCCTAATTGCGGAGAACTCTTCGCTATCTGTTTTGCATGAAAACCAACTTCTACTTATCGATTTCTTCAAAATTTCTTTTTTTTTTAAATTTCGTTTTCTCACTCAATTTGTTTTCAGTCCGGCGGGTCCATAATATCGGATGTCTTGTCGAGATTGTACAAGAAAAGGAGGATGTGTATACA</canonical_amplicon>
		<polymorphic_amplicon>TAAACTTTTACAGCTTCCCTTCTTTTCCTTCGTTTTCGTTTTATCTAGCTTTTGAGTTAGAGAAAAGCCTAATTGCGGAGAACTCTTCGCTATCTGTTTTGCATGAAAACCAACTTCTACTTATCGATTTCTTCAAAATTTCWTTTTTTTTTAAATTTCGTTTTCTCACTCAATTTGTTTTCAGTCCGGCGGGTCCATAATATCGGATGTCTTGTCGAGATTGTACAAGAAAAGGAGGATGTGTATACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24311</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>266553</contig_pos>
        <strand></strand>
        <context>WTTTTTTTTT[A/T]AATTTCGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGAAAACCAACTTCTACTTATCGATTTCTTCAAAATTTCTTTTTTTTTT</left_flank>
        <right_flank>AATTTCGTTTTCTCACTCAATTTGTTTTCAGTCCGGCGGGTCCATAATAT</right_flank>
        <qual_score>33</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATTTTTTATGAGCATCCTTTGGATGCTCGTTCACTTTTGTTCTCAAGTTTTTGGTCAAAACATTTTTGTTTCATTCATTTTATAAACTCGTCTTAATCCTATTCAAAAGATAAAATATAATCCCCCAATAAAAGGTGTCTTTATGAAATAAATGCCTTCTTTATGAATAACTTTTTTGTGGGACGGCTGAGTTAGTCTGCACTAAATAAGACAATGTTTGAACAGTGTCCTTCCTGCTGTGTCTTTTAATGTAAAAAGACCGCAATGCCGCCCGATCTCTGCTTGTCTGCTTCTCGTTTTTCTTTCTCTTCTTCACATTTCTTGCCTCCTGATGATTCATCACTCTAAACTTTTACAGCTTCCCTTCTTTTCCTTCGTTTTCGTTTTATCTAGCTTTTGAGTTAGAGAAAAGCCTAATTGCGGAGAACTCTTCGCTATCTGTTTTGCATGAAAACCAACTTCTACTTATCGATTTCTTCAAAATTTCTTTTTTTTTTAAATTTCGTTTTCTCACTCAATTTGTTTTCAGTCCGGCGGGTCCATAATATCGGATGTCTTGTCGAGATTGTACAAGAAAAGGAGGATGTGTATACACAACATTTTGGGTAATTTTTTTTAAAGCTTCAATTTGCTGTTTCGAAATTTTTCCATTCAATTTGACTCCTATAAAAATTACATCAATAGAAAAAAAACAACTATGCGTTGAGGGAAATTATTGGAGGAAATTGAAAAGTGGAAGAATCGAAAAGACCCCAAATGAAAAAGCGATTCAGTTTCCTTCTCGAAATTGAATTGAATTTTTTCGGGTCGGACTCACATACGCACTGATACTCTTTTCTAACGCCAATTCAACGCAATCATCATTCTTGAATGTCCGTTGTCAGAATGCGTCGTTGATGATAAGGATCAAAATTGTGAAGCGAATTGATATCTGTTGCGTGTTGCGGTTGCGCGGTCTTGCCGAACATGACCCAAATCGAATTCTGACTATTACTAAA</canonical>
            <polymorphic>TAATTTTTTATGAGCATCCTTTGGATGCTCGTTCACTTTTGTTCTCAAGTTTTTGGTCAAAACATTTTTGTTTCATTCATTTTATAAACTCGTCTTAATCCTATTCAAAAGATAAAATATAATCCCCCAATAAAAGGTGTCTTTATGAAATAAATGCCTTCTTTATGAATAACTTTTTTGTGGGACGGCTGAGTTAGTCTGCACTAAATAAGACAATGTTTGAACAGTGTCCTTCCTGCTGTGTCTTTTAATGTAAAAAGACCGCAATGCCGCCCGATCTCTGCTTGTCTGCTTCTCGTTTTTCTTTCTCTTCTTCACATTTCTTGCCTCCTGATGATTCATCACTCTAAACTTTTACAGCTTCCCTTCTTTTCCTTCGTTTTCGTTTTATCTAGCTTTTGAGTTAGAGAAAAGCCTAATTGCGGAGAACTCTTCGCTATCTGTTTTGCATGAAAACCAACTTCTACTTATCGATTTCTTCAAAATTTCTTTTTTTTTTWAATTTCGTTTTCTCACTCAATTTGTTTTCAGTCCGGCGGGTCCATAATATCGGATGTCTTGTCGAGATTGTACAAGAAAAGGAGGATGTGTATACACAACATTTTGGGTAATTTTTTTTAAAGCTTCAATTTGCTGTTTCGAAATTTTTCCATTCAATTTGACTCCTATAAAAATTACATCAATAGAAAAAAAACAACTATGCGTTGAGGGAAATTATTGGAGGAAATTGAAAAGTGGAAGAATCGAAAAGACCCCAAATGAAAAAGCGATTCAGTTTCCTTCTCGAAATTGAATTGAATTTTTTCGGGTCGGACTCACATACGCACTGATACTCTTTTCTAACGCCAATTCAACGCAATCATCATTCTTGAATGTCCGTTGTCAGAATGCGTCGTTGATGATAAGGATCAAAATTGTGAAGCGAATTGATATCTGTTGCGTGTTGCGGTTGCGCGGTCTTGCCGAACATGACCCAAATCGAATTCTGACTATTACTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>483 184 155 142 19 17</canonical_bands>
                <polymorphic_bands>483 184 159 155 19</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 381 120</canonical_bands>
                <polymorphic_bands>619 381</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>382 250 153 120 95</canonical_bands>
                <polymorphic_bands>382 370 153 95</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAACTTTTACAGCTTCCCTTCT</pcr_primer_p1>
		<pcr_primer_p2>TGTATACACATCCTCCTTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAAACTTTTACAGCTTCCCTTCTTTTCCTTCGTTTTCGTTTTATCTAGCTTTTGAGTTAGAGAAAAGCCTAATTGCGGAGAACTCTTCGCTATCTGTTTTGCATGAAAACCAACTTCTACTTATCGATTTCTTCAAAATTTCTTTTTTTTTTAAATTTCGTTTTCTCACTCAATTTGTTTTCAGTCCGGCGGGTCCATAATATCGGATGTCTTGTCGAGATTGTACAAGAAAAGGAGGATGTGTATACA</canonical_amplicon>
		<polymorphic_amplicon>TAAACTTTTACAGCTTCCCTTCTTTTCCTTCGTTTTCGTTTTATCTAGCTTTTGAGTTAGAGAAAAGCCTAATTGCGGAGAACTCTTCGCTATCTGTTTTGCATGAAAACCAACTTCTACTTATCGATTTCTTCAAAATTTCTTTTTTTTTTWAATTTCGTTTTCTCACTCAATTTGTTTTCAGTCCGGCGGGTCCATAATATCGGATGTCTTGTCGAGATTGTACAAGAAAAGGAGGATGTGTATACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24312</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>266879</contig_pos>
        <strand>+</strand>
        <context>TCACATACGC[A/T]CTGATACTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCCTTCTCGAAATTGAATTGAATTTTTTCGGGTCGGACTCACATACGC</left_flank>
        <right_flank>CTGATACTCTTTTCTAACGCCAATTCAACGCAATCATCATTCTTGAATGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTCCTGATGATTCATCACTCTAAACTTTTACAGCTTCCCTTCTTTTCCTTCGTTTTCGTTTTATCTAGCTTTTGAGTTAGAGAAAAGCCTAATTGCGGAGAACTCTTCGCTATCTGTTTTGCATGAAAACCAACTTCTACTTATCGATTTCTTCAAAATTTCTTTTTTTTTTAAATTTCGTTTTCTCACTCAATTTGTTTTCAGTCCGGCGGGTCCATAATATCGGATGTCTTGTCGAGATTGTACAAGAAAAGGAGGATGTGTATACACAACATTTTGGGTAATTTTTTTTAAAGCTTCAATTTGCTGTTTCGAAATTTTTCCATTCAATTTGACTCCTATAAAAATTACATCAATAGAAAAAAAACAACTATGCGTTGAGGGAAATTATTGGAGGAAATTGAAAAGTGGAAGAATCGAAAAGACCCCAAATGAAAAAGCGATTCAGTTTCCTTCTCGAAATTGAATTGAATTTTTTCGGGTCGGACTCACATACGCACTGATACTCTTTTCTAACGCCAATTCAACGCAATCATCATTCTTGAATGTCCGTTGTCAGAATGCGTCGTTGATGATAAGGATCAAAATTGTGAAGCGAATTGATATCTGTTGCGTGTTGCGGTTGCGCGGTCTTGCCGAACATGACCCAAATCGAATTCTGACTATTACTAAAACTACTGTCTCTGTGTTTACCGCGCCTTGCCCAGACATACTTTGTTATTGCGACAACGCGACGTCAACTTTCTAACTTCTAATTGAAAAAAATCAGCTGTCCGCACCTATGTTTGATTTATTTGACAAAGTCAGGTACAAAATTGACGACATATTGCTCAAATACAAAGTAAGACAGCTGAAGATAATTCCCATCTAGTTCGCTCTGGAAGAATGCATTCCAAAAAATATTTTCTATTTCAGTTGGTCCGATTTCTACCTGTCGTACTTGTCACACTAGCCACTGCATGGGGAATCTATGCTTACACCTACGAACTATGCATCCGT</canonical>
            <polymorphic>CCTCCTGATGATTCATCACTCTAAACTTTTACAGCTTCCCTTCTTTTCCTTCGTTTTCGTTTTATCTAGCTTTTGAGTTAGAGAAAAGCCTAATTGCGGAGAACTCTTCGCTATCTGTTTTGCATGAAAACCAACTTCTACTTATCGATTTCTTCAAAATTTCTTTTTTTTTTAAATTTCGTTTTCTCACTCAATTTGTTTTCAGTCCGGCGGGTCCATAATATCGGATGTCTTGTCGAGATTGTACAAGAAAAGGAGGATGTGTATACACAACATTTTGGGTAATTTTTTTTAAAGCTTCAATTTGCTGTTTCGAAATTTTTCCATTCAATTTGACTCCTATAAAAATTACATCAATAGAAAAAAAACAACTATGCGTTGAGGGAAATTATTGGAGGAAATTGAAAAGTGGAAGAATCGAAAAGACCCCAAATGAAAAAGCGATTCAGTTTCCTTCTCGAAATTGAATTGAATTTTTTCGGGTCGGACTCACATACGCWCTGATACTCTTTTCTAACGCCAATTCAACGCAATCATCATTCTTGAATGTCCGTTGTCAGAATGCGTCGTTGATGATAAGGATCAAAATTGTGAAGCGAATTGATATCTGTTGCGTGTTGCGGTTGCGCGGTCTTGCCGAACATGACCCAAATCGAATTCTGACTATTACTAAAACTACTGTCTCTGTGTTTACCGCGCCTTGCCCAGACATACTTTGTTATTGCGACAACGCGACGTCAACTTTCTAACTTCTAATTGAAAAAAATCAGCTGTCCGCACCTATGTTTGATTTATTTGACAAAGTCAGGTACAAAATTGACGACATATTGCTCAAATACAAAGTAAGACAGCTGAAGATAATTCCCATCTAGTTCGCTCTGGAAGAATGCATTCCAAAAAATATTTTCTATTTCAGTTGGTCCGATTTCTACCTGTCGTACTTGTCACACTAGCCACTGCATGGGGAATCTATGCTTACACCTACGAACTATGCATCCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>171 168 141 93 90 81 75 72 24 24 20 18 8 7 6 2</canonical_bands>
                <polymorphic_bands>171 168 141 101 90 81 75 72 24 24 20 18 7 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCAGTTTCCTTCTCGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CGGTAAACACAGAGACAGTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ATTCAGTTTCCTTCTCGAAATTGAATTGAATTTTTTCGGGTCGGACTCACATACGCACTGATACTCTTTTCTAACGCCAATTCAACGCAATCATCATTCTTGAATGTCCGTTGTCAGAATGCGTCGTTGATGATAAGGATCAAAATTGTGAAGCGAATTGATATCTGTTGCGTGTTGCGGTTGCGCGGTCTTGCCGAACATGACCCAAATCGAATTCTGACTATTACTAAAACTACTGTCTCTGTGTTTACCG</canonical_amplicon>
		<polymorphic_amplicon>ATTCAGTTTCCTTCTCGAAATTGAATTGAATTTTTTCGGGTCGGACTCACATACGCWCTGATACTCTTTTCTAACGCCAATTCAACGCAATCATCATTCTTGAATGTCCGTTGTCAGAATGCGTCGTTGATGATAAGGATCAAAATTGTGAAGCGAATTGATATCTGTTGCGTGTTGCGGTTGCGCGGTCTTGCCGAACATGACCCAAATCGAATTCTGACTATTACTAAAACTACTGTCTCTGTGTTTACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24313</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>270634</contig_pos>
        <strand></strand>
        <context>tgatagacgc[C/T]tacccgaact</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTATTATGCATCAACCTCAAATACCGAATTTCCAAAAATGATAGACGC</left_flank>
        <right_flank>TACCCGAACTTTCAACTTTAAGCTCAATTATCTCGATTCCTGTAAACGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTAATACTCGGATTACTGTAGTTCTTCACTACCTCTAACTGTTCCATCTCCACTCGAGCAGTTAACAAATCTTCAACATCTGCACCAGCACCTGTATTTTAATATTCCCTTCTTTCATTTTTCTCCCAACTTTTTCTCACCCAATCCGAAAGAGTCAACTGATGAATCAGTTTTGACACGATGCCCTCTTGTCAATCGAGAAACCAAACTGTTTGCTCTTCTGATTTTTGCCGCTTTCCTCTTTTTATGCCAGAGAATGAGTCGGAACTTTAGACGTATAGACTGAGCGTAGAGAAACCTGAACATTGCTGATAACACCCATCGGAAATTAAGAAGTCATGTGGTTAAGGAGATTGACTAGAAATCAATTGGGCTCTGCCCGCGTAGGTTCGAATCCTGCCGACTGCGGATTTCTTTTTTAGAAGATTAGGTTTTTTGGACATCGTTCTTTTATTATGCATCAACCTCAAATACCGAATTTCCAAAAATGATAGACGCCTACCCGAACTTTCAACTTTAAGCTCAATTATCTCGATTCCTGTAAACGATATCAAAAAAATGTCATCTAACAAAATGTTTACTATAATATCAAAAATATTTTCTTAGTTAACTACTTTTTGATATCTTTTACAGGCAACGAGATAAATTGGCTCAACGTAGAGAATATGGGTAACATTTATTAGGTTATGGATAGAATAGAACAAAAATTTTGATTATTTTTTCTTCAACAACCCATTTTTAGGCGGTACTGTATCGTATCTGAATCGTACCTGAATATTTTTGCCATCACATCTCCAATGTTGGTCAGAAAAAGAAGCATGAGTGGGATACCAATTATGGCGTAAAGCATAGTCAACGTCTTCCCAATATAAGTTTTCGCTGCAGTGTTTCCATATCCTAAAAATGATGAATGAATTCGACTTAATCAATCCTCGCACCAATAGTTGTGATGACAGTAAGACTGTAGAGGAAGGCACCAGTGAATGTCCATTGAGCCTG</canonical>
            <polymorphic>AGTAATACTCGGATTACTGTAGTTCTTCACTACCTCTAACTGTTCCATCTCCACTCGAGCAGTTAACAAATCTTCAACATCTGCACCAGCACCTGTATTTTAATATTCCCTTCTTTCATTTTTCTCCCAACTTTTTCTCACCCAATCCGAAAGAGTCAACTGATGAATCAGTTTTGACACGATGCCCTCTTGTCAATCGAGAAACCAAACTGTTTGCTCTTCTGATTTTTGCCGCTTTCCTCTTTTTATGCCAGAGAATGAGTCGGAACTTTAGACGTATAGACTGAGCGTAGAGAAACCTGAACATTGCTGATAACACCCATCGGAAATTAAGAAGTCATGTGGTTAAGGAGATTGACTAGAAATCAATTGGGCTCTGCCCGCGTAGGTTCGAATCCTGCCGACTGCGGATTTCTTTTTTAGAAGATTAGGTTTTTTGGACATCGTTCTTTTATTATGCATCAACCTCAAATACCGAATTTCCAAAAATGATAGACGCYTACCCGAACTTTCAACTTTAAGCTCAATTATCTCGATTCCTGTAAACGATATCAAAAAAATGTCATCTAACAAAATGTTTACTATAATATCAAAAATATTTTCTTAGTTAACTACTTTTTGATATCTTTTACAGGCAACGAGATAAATTGGCTCAACGTAGAGAATATGGGTAACATTTATTAGGTTATGGATAGAATAGAACAAAAATTTTGATTATTTTTTCTTCAACAACCCATTTTTAGGCGGTACTGTATCGTATCTGAATCGTACCTGAATATTTTTGCCATCACATCTCCAATGTTGGTCAGAAAAAGAAGCATGAGTGGGATACCAATTATGGCGTAAAGCATAGTCAACGTCTTCCCAATATAAGTTTTCGCTGCAGTGTTTCCATATCCTAAAAATGATGAATGAATTCGACTTAATCAATCCTCGCACCAATAGTTGTGATGACAGTAAGACTGTAGAGGAAGGCACCAGTGAATGTCCATTGAGCCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGACATCGTTCTTTTATTATGC</pcr_primer_p1>
		<pcr_primer_p2>AAATGGGTTGTTGAAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>GGACATCGTTCTTTTATTATGCATCAACCTCAAATACCGAATTTCCAAAAATGATAGACGCCTACCCGAACTTTCAACTTTAAGCTCAATTATCTCGATTCCTGTAAACGATATCAAAAAAATGTCATCTAACAAAATGTTTACTATAATATCAAAAATATTTTCTTAGTTAACTACTTTTTGATATCTTTTACAGGCAACGAGATAAATTGGCTCAACGTAGAGAATATGGGTAACATTTATTAGGTTATGGATAGAATAGAACAAAAATTTTGATTATTTTTTCTTCAACAACCCATTT</canonical_amplicon>
		<polymorphic_amplicon>GGACATCGTTCTTTTATTATGCATCAACCTCAAATACCGAATTTCCAAAAATGATAGACGCYTACCCGAACTTTCAACTTTAAGCTCAATTATCTCGATTCCTGTAAACGATATCAAAAAAATGTCATCTAACAAAATGTTTACTATAATATCAAAAATATTTTCTTAGTTAACTACTTTTTGATATCTTTTACAGGCAACGAGATAAATTGGCTCAACGTAGAGAATATGGGTAACATTTATTAGGTTATGGATAGAATAGAACAAAAATTTTGATTATTTTTTCTTCAACAACCCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24314</snp_id>
        <super_contig>c000501112.Contig1</super_contig>
        <contig_pos>270700</contig_pos>
        <strand></strand>
        <context>aaaaatgtca[T/C]ctaacaaaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTTTAAGCTCAATTATCTCGATTCCTGTAAACGATATCAAAAAAATGTCA</left_flank>
        <right_flank>CTAACAAAATGTTTACTATAATATCAAAAATATTTTCTTAGTTAACTACT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATCTTCAACATCTGCACCAGCACCTGTATTTTAATATTCCCTTCTTTCATTTTTCTCCCAACTTTTTCTCACCCAATCCGAAAGAGTCAACTGATGAATCAGTTTTGACACGATGCCCTCTTGTCAATCGAGAAACCAAACTGTTTGCTCTTCTGATTTTTGCCGCTTTCCTCTTTTTATGCCAGAGAATGAGTCGGAACTTTAGACGTATAGACTGAGCGTAGAGAAACCTGAACATTGCTGATAACACCCATCGGAAATTAAGAAGTCATGTGGTTAAGGAGATTGACTAGAAATCAATTGGGCTCTGCCCGCGTAGGTTCGAATCCTGCCGACTGCGGATTTCTTTTTTAGAAGATTAGGTTTTTTGGACATCGTTCTTTTATTATGCATCAACCTCAAATACCGAATTTCCAAAAATGATAGACGCCTACCCGAACTTTCAACTTTAAGCTCAATTATCTCGATTCCTGTAAACGATATCAAAAAAATGTCATCTAACAAAATGTTTACTATAATATCAAAAATATTTTCTTAGTTAACTACTTTTTGATATCTTTTACAGGCAACGAGATAAATTGGCTCAACGTAGAGAATATGGGTAACATTTATTAGGTTATGGATAGAATAGAACAAAAATTTTGATTATTTTTTCTTCAACAACCCATTTTTAGGCGGTACTGTATCGTATCTGAATCGTACCTGAATATTTTTGCCATCACATCTCCAATGTTGGTCAGAAAAAGAAGCATGAGTGGGATACCAATTATGGCGTAAAGCATAGTCAACGTCTTCCCAATATAAGTTTTCGCTGCAGTGTTTCCATATCCTAAAAATGATGAATGAATTCGACTTAATCAATCCTCGCACCAATAGTTGTGATGACAGTAAGACTGTAGAGGAAGGCACCAGTGAATGTCCATTGAGCCTGTTTACCGTATTCCTTTCCATCATAACCTTTTCGAATTGATTGCATGCAAACTGTTTTGAAAACTTT</canonical>
            <polymorphic>CAAATCTTCAACATCTGCACCAGCACCTGTATTTTAATATTCCCTTCTTTCATTTTTCTCCCAACTTTTTCTCACCCAATCCGAAAGAGTCAACTGATGAATCAGTTTTGACACGATGCCCTCTTGTCAATCGAGAAACCAAACTGTTTGCTCTTCTGATTTTTGCCGCTTTCCTCTTTTTATGCCAGAGAATGAGTCGGAACTTTAGACGTATAGACTGAGCGTAGAGAAACCTGAACATTGCTGATAACACCCATCGGAAATTAAGAAGTCATGTGGTTAAGGAGATTGACTAGAAATCAATTGGGCTCTGCCCGCGTAGGTTCGAATCCTGCCGACTGCGGATTTCTTTTTTAGAAGATTAGGTTTTTTGGACATCGTTCTTTTATTATGCATCAACCTCAAATACCGAATTTCCAAAAATGATAGACGCCTACCCGAACTTTCAACTTTAAGCTCAATTATCTCGATTCCTGTAAACGATATCAAAAAAATGTCAYCTAACAAAATGTTTACTATAATATCAAAAATATTTTCTTAGTTAACTACTTTTTGATATCTTTTACAGGCAACGAGATAAATTGGCTCAACGTAGAGAATATGGGTAACATTTATTAGGTTATGGATAGAATAGAACAAAAATTTTGATTATTTTTTCTTCAACAACCCATTTTTAGGCGGTACTGTATCGTATCTGAATCGTACCTGAATATTTTTGCCATCACATCTCCAATGTTGGTCAGAAAAAGAAGCATGAGTGGGATACCAATTATGGCGTAAAGCATAGTCAACGTCTTCCCAATATAAGTTTTCGCTGCAGTGTTTCCATATCCTAAAAATGATGAATGAATTCGACTTAATCAATCCTCGCACCAATAGTTGTGATGACAGTAAGACTGTAGAGGAAGGCACCAGTGAATGTCCATTGAGCCTGTTTACCGTATTCCTTTCCATCATAACCTTTTCGAATTGATTGCATGCAAACTGTTTTGAAAACTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGACATCGTTCTTTTATTATGC</pcr_primer_p1>
		<pcr_primer_p2>AAATGGGTTGTTGAAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>GGACATCGTTCTTTTATTATGCATCAACCTCAAATACCGAATTTCCAAAAATGATAGACGCCTACCCGAACTTTCAACTTTAAGCTCAATTATCTCGATTCCTGTAAACGATATCAAAAAAATGTCATCTAACAAAATGTTTACTATAATATCAAAAATATTTTCTTAGTTAACTACTTTTTGATATCTTTTACAGGCAACGAGATAAATTGGCTCAACGTAGAGAATATGGGTAACATTTATTAGGTTATGGATAGAATAGAACAAAAATTTTGATTATTTTTTCTTCAACAACCCATTT</canonical_amplicon>
		<polymorphic_amplicon>GGACATCGTTCTTTTATTATGCATCAACCTCAAATACCGAATTTCCAAAAATGATAGACGCCTACCCGAACTTTCAACTTTAAGCTCAATTATCTCGATTCCTGTAAACGATATCAAAAAAATGTCAYCTAACAAAATGTTTACTATAATATCAAAAATATTTTCTTAGTTAACTACTTTTTGATATCTTTTACAGGCAACGAGATAAATTGGCTCAACGTAGAGAATATGGGTAACATTTATTAGGTTATGGATAGAATAGAACAAAAATTTTGATTATTTTTTCTTCAACAACCCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24315</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>30471</contig_pos>
        <strand>+</strand>
        <context>AAAACTTCGA[A/C]AAGTGTCGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCGTGTATCTTAATGGTCGATACAAACAAACGAAAACTAAAAACTTCGA</left_flank>
        <right_flank>AAGTGTCGAGTCAAAAAAAAACTAAAAATGTAAAAGGTGAAATAGTGTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCGCCTGTTACCGTACCGGTCAATAAGATATACAGAAATTTATTTTCTAGTTGATTTTGACCATTTTCAAGAGTCTGGAGCACAACTGTCTAGCTTTCGATCATTTTGAAAAAAACTTAGTTTGGAAAATTTGCATTCACAGAATTAAAAAAAATGATAGTTTTTCAGCTATGTGCCTGTTTTTGAAGGCACTCATTTTTGTCTCGTTTTCGTACTGAAAATGGGAAAAAAAAGCATGTGTCCTTGAGAAATTGAAATATAACTTAAAATCTTGGAAATTTCAAAAAGTTATGTGAATTTACATTTTTCAATTTAAGTCTGTTTTACACCTTCCAAAGTTTTCAAAGTTATCGAAAACTTGACAGCTGAGCTGCAGGCTTCGCAAAATGGTTAGAAAAGCACAAAAAATCAACTGAAAATCAAATGAAAATCAAATAAAAAATACGTTTTCGTGTATCTTAATGGTCGATACAAACAAACGAAAACTAAAAACTTCGAAAAGTGTCGAGTCAAAAAAAAACTAAAAATGTAAAAGGTGAAATAGTGTTAAAAGCAGTGAAATTTAAACGCTAGAAGAACTCTCTTTTTTTTTGCCTTATGCTAGAACAAGAAAAAACAATGACCCAACTGCAAAAGATATGAATGTTTGCGAATATCTAGTAAAGAGAGCTTGATTCGGCGAAACTTAATCAAAGAAAAAGCACCAGGAGGTCTGATGAAATGAAAAACGAATAAGAGTGATGGAAGAGAAAAAAATCAAAAAGCATGTGGGAAAGAGTCAGAGTCAGGACTTGGCAGAAATGAAATTTTGGGGTTTGAGGTTTCTATCCTACTAAGCTTAGCAATCAAGTTATTTGTTCCATTAGTGCAAAATTAGTACAAAGCATGTGTATGTGTGGGAACAACACACATAAAATATTTTCTACTAAAAGACAGTTCTACTTGAAGTTCTTCGATACAGTATCCTTTTCTCTACTCAAGGAACGAGTAACACATAAG</canonical>
            <polymorphic>GGCGCCTGTTACCGTACCGGTCAATAAGATATACAGAAATTTATTTTCTAGTTGATTTTGACCATTTTCAAGAGTCTGGAGCACAACTGTCTAGCTTTCGATCATTTTGAAAAAAACTTAGTTTGGAAAATTTGCATTCACAGAATTAAAAAAAATGATAGTTTTTCAGCTATGTGCCTGTTTTTGAAGGCACTCATTTTTGTCTCGTTTTCGTACTGAAAATGGGAAAAAAAAGCATGTGTCCTTGAGAAATTGAAATATAACTTAAAATCTTGGAAATTTCAAAAAGTTATGTGAATTTACATTTTTCAATTTAAGTCTGTTTTACACCTTCCAAAGTTTTCAAAGTTATCGAAAACTTGACAGCTGAGCTGCAGGCTTCGCAAAATGGTTAGAAAAGCACAAAAAATCAACTGAAAATCAAATGAAAATCAAATAAAAAATACGTTTTCGTGTATCTTAATGGTCGATACAAACAAACGAAAACTAAAAACTTCGAMAAGTGTCGAGTCAAAAAAAAACTAAAAATGTAAAAGGTGAAATAGTGTTAAAAGCAGTGAAATTTAAACGCTAGAAGAACTCTCTTTTTTTTTGCCTTATGCTAGAACAAGAAAAAACAATGACCCAACTGCAAAAGATATGAATGTTTGCGAATATCTAGTAAAGAGAGCTTGATTCGGCGAAACTTAATCAAAGAAAAAGCACCAGGAGGTCTGATGAAATGAAAAACGAATAAGAGTGATGGAAGAGAAAAAAATCAAAAAGCATGTGGGAAAGAGTCAGAGTCAGGACTTGGCAGAAATGAAATTTTGGGGTTTGAGGTTTCTATCCTACTAAGCTTAGCAATCAAGTTATTTGTTCCATTAGTGCAAAATTAGTACAAAGCATGTGTATGTGTGGGAACAACACACATAAAATATTTTCTACTAAAAGACAGTTCTACTTGAAGTTCTTCGATACAGTATCCTTTTCTCTACTCAAGGAACGAGTAACACATAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGTAGGAAAATGTTTTGAAC</pcr_primer_p1>
		<pcr_primer_p2>GCTTTTAACACTATTTCACCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>600</pcr_amplicon_size>
		<canonical_amplicon>AAAAGTGTCGAGTCAAAAAAAAACTAAAAATGTAAAAGGTGAAATAGTGTTAAAAGC</canonical_amplicon>
		<polymorphic_amplicon>AMAAGTGTCGAGTCAAAAAAAAACTAAAAATGTAAAAGGTGAAATAGTGTTAAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24316</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>30528</contig_pos>
        <strand>+</strand>
        <context>GTTAAAAGCA[A/G]TGAAATTTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAGTCAAAAAAAAACTAAAAATGTAAAAGGTGAAATAGTGTTAAAAGCA</left_flank>
        <right_flank>TGAAATTTAAACGCTAGAAGAACTCTCTTTTTTTTTGCCTTATGCTAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGACCATTTTCAAGAGTCTGGAGCACAACTGTCTAGCTTTCGATCATTTTGAAAAAAACTTAGTTTGGAAAATTTGCATTCACAGAATTAAAAAAAATGATAGTTTTTCAGCTATGTGCCTGTTTTTGAAGGCACTCATTTTTGTCTCGTTTTCGTACTGAAAATGGGAAAAAAAAGCATGTGTCCTTGAGAAATTGAAATATAACTTAAAATCTTGGAAATTTCAAAAAGTTATGTGAATTTACATTTTTCAATTTAAGTCTGTTTTACACCTTCCAAAGTTTTCAAAGTTATCGAAAACTTGACAGCTGAGCTGCAGGCTTCGCAAAATGGTTAGAAAAGCACAAAAAATCAACTGAAAATCAAATGAAAATCAAATAAAAAATACGTTTTCGTGTATCTTAATGGTCGATACAAACAAACGAAAACTAAAAACTTCGAAAAGTGTCGAGTCAAAAAAAAACTAAAAATGTAAAAGGTGAAATAGTGTTAAAAGCAGTGAAATTTAAACGCTAGAAGAACTCTCTTTTTTTTTGCCTTATGCTAGAACAAGAAAAAACAATGACCCAACTGCAAAAGATATGAATGTTTGCGAATATCTAGTAAAGAGAGCTTGATTCGGCGAAACTTAATCAAAGAAAAAGCACCAGGAGGTCTGATGAAATGAAAAACGAATAAGAGTGATGGAAGAGAAAAAAATCAAAAAGCATGTGGGAAAGAGTCAGAGTCAGGACTTGGCAGAAATGAAATTTTGGGGTTTGAGGTTTCTATCCTACTAAGCTTAGCAATCAAGTTATTTGTTCCATTAGTGCAAAATTAGTACAAAGCATGTGTATGTGTGGGAACAACACACATAAAATATTTTCTACTAAAAGACAGTTCTACTTGAAGTTCTTCGATACAGTATCCTTTTCTCTACTCAAGGAACGAGTAACACATAAGAAAACTATTTGGGAACAACTTTCTATCCCGATCCTTCCGTTCAAACCACCAACCAAA</canonical>
            <polymorphic>TTGACCATTTTCAAGAGTCTGGAGCACAACTGTCTAGCTTTCGATCATTTTGAAAAAAACTTAGTTTGGAAAATTTGCATTCACAGAATTAAAAAAAATGATAGTTTTTCAGCTATGTGCCTGTTTTTGAAGGCACTCATTTTTGTCTCGTTTTCGTACTGAAAATGGGAAAAAAAAGCATGTGTCCTTGAGAAATTGAAATATAACTTAAAATCTTGGAAATTTCAAAAAGTTATGTGAATTTACATTTTTCAATTTAAGTCTGTTTTACACCTTCCAAAGTTTTCAAAGTTATCGAAAACTTGACAGCTGAGCTGCAGGCTTCGCAAAATGGTTAGAAAAGCACAAAAAATCAACTGAAAATCAAATGAAAATCAAATAAAAAATACGTTTTCGTGTATCTTAATGGTCGATACAAACAAACGAAAACTAAAAACTTCGAAAAGTGTCGAGTCAAAAAAAAACTAAAAATGTAAAAGGTGAAATAGTGTTAAAAGCARTGAAATTTAAACGCTAGAAGAACTCTCTTTTTTTTTGCCTTATGCTAGAACAAGAAAAAACAATGACCCAACTGCAAAAGATATGAATGTTTGCGAATATCTAGTAAAGAGAGCTTGATTCGGCGAAACTTAATCAAAGAAAAAGCACCAGGAGGTCTGATGAAATGAAAAACGAATAAGAGTGATGGAAGAGAAAAAAATCAAAAAGCATGTGGGAAAGAGTCAGAGTCAGGACTTGGCAGAAATGAAATTTTGGGGTTTGAGGTTTCTATCCTACTAAGCTTAGCAATCAAGTTATTTGTTCCATTAGTGCAAAATTAGTACAAAGCATGTGTATGTGTGGGAACAACACACATAAAATATTTTCTACTAAAAGACAGTTCTACTTGAAGTTCTTCGATACAGTATCCTTTTCTCTACTCAAGGAACGAGTAACACATAAGAAAACTATTTGGGAACAACTTTCTATCCCGATCCTTCCGTTCAAACCACCAACCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>145 98 84 73 57 55 54 53 50 49 37 36 34 33 30 26 22 16 12 9 9 8 6 2 2</canonical_bands>
                <polymorphic_bands>157 98 84 73 57 55 54 53 50 49 37 36 34 33 30 26 22 16 9 9 8 6 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACAAACGAAAACTAAAAACTTC</pcr_primer_p1>
		<pcr_primer_p2>ATTTCATCAGACCTCCTGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACAAACGAAAACTAAAAACTTCGAAAAGTGTCGAGTCAAAAAAAAACTAAAAATGTAAAAGGTGAAATAGTGTTAAAAGCAGTGAAATTTAAACGCTAGAAGAACTCTCTTTTTTTTTGCCTTATGCTAGAACAAGAAAAAACAATGACCCAACTGCAAAAGATATGAATGTTTGCGAATATCTAGTAAAGAGAGCTTGATTCGGCGAAACTTAATCAAAGAAAAAGCACCAGGAGGTCTGATGAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAACAAACGAAAACTAAAAACTTCGAAAAGTGTCGAGTCAAAAAAAAACTAAAAATGTAAAAGGTGAAATAGTGTTAAAAGCARTGAAATTTAAACGCTAGAAGAACTCTCTTTTTTTTTGCCTTATGCTAGAACAAGAAAAAACAATGACCCAACTGCAAAAGATATGAATGTTTGCGAATATCTAGTAAAGAGAGCTTGATTCGGCGAAACTTAATCAAAGAAAAAGCACCAGGAGGTCTGATGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24317</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>30628</contig_pos>
        <strand>+</strand>
        <context>TTTGCGAATA[C/T]CTAGTAAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAAGAAAAAACAATGACCCAACTGCAAAAGATATGAATGTTTGCGAATA</left_flank>
        <right_flank>CTAGTAAAGAGAGCTTGATTCGGCGAAACTTAATCAAAGAAAAAGCACCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGTTTTTCAGCTATGTGCCTGTTTTTGAAGGCACTCATTTTTGTCTCGTTTTCGTACTGAAAATGGGAAAAAAAAGCATGTGTCCTTGAGAAATTGAAATATAACTTAAAATCTTGGAAATTTCAAAAAGTTATGTGAATTTACATTTTTCAATTTAAGTCTGTTTTACACCTTCCAAAGTTTTCAAAGTTATCGAAAACTTGACAGCTGAGCTGCAGGCTTCGCAAAATGGTTAGAAAAGCACAAAAAATCAACTGAAAATCAAATGAAAATCAAATAAAAAATACGTTTTCGTGTATCTTAATGGTCGATACAAACAAACGAAAACTAAAAACTTCGAAAAGTGTCGAGTCAAAAAAAAACTAAAAATGTAAAAGGTGAAATAGTGTTAAAAGCAGTGAAATTTAAACGCTAGAAGAACTCTCTTTTTTTTTGCCTTATGCTAGAACAAGAAAAAACAATGACCCAACTGCAAAAGATATGAATGTTTGCGAATATCTAGTAAAGAGAGCTTGATTCGGCGAAACTTAATCAAAGAAAAAGCACCAGGAGGTCTGATGAAATGAAAAACGAATAAGAGTGATGGAAGAGAAAAAAATCAAAAAGCATGTGGGAAAGAGTCAGAGTCAGGACTTGGCAGAAATGAAATTTTGGGGTTTGAGGTTTCTATCCTACTAAGCTTAGCAATCAAGTTATTTGTTCCATTAGTGCAAAATTAGTACAAAGCATGTGTATGTGTGGGAACAACACACATAAAATATTTTCTACTAAAAGACAGTTCTACTTGAAGTTCTTCGATACAGTATCCTTTTCTCTACTCAAGGAACGAGTAACACATAAGAAAACTATTTGGGAACAACTTTCTATCCCGATCCTTCCGTTCAAACCACCAACCAAAAAACCTGTTATTTCAGGAGAACAGTATGTGAGAAGATGGACAATTGACATGAGGAACTGCTGAATTATGGCATAATTGCTGTTCTATTTCTAAAATGACC</canonical>
            <polymorphic>ATAGTTTTTCAGCTATGTGCCTGTTTTTGAAGGCACTCATTTTTGTCTCGTTTTCGTACTGAAAATGGGAAAAAAAAGCATGTGTCCTTGAGAAATTGAAATATAACTTAAAATCTTGGAAATTTCAAAAAGTTATGTGAATTTACATTTTTCAATTTAAGTCTGTTTTACACCTTCCAAAGTTTTCAAAGTTATCGAAAACTTGACAGCTGAGCTGCAGGCTTCGCAAAATGGTTAGAAAAGCACAAAAAATCAACTGAAAATCAAATGAAAATCAAATAAAAAATACGTTTTCGTGTATCTTAATGGTCGATACAAACAAACGAAAACTAAAAACTTCGAAAAGTGTCGAGTCAAAAAAAAACTAAAAATGTAAAAGGTGAAATAGTGTTAAAAGCAGTGAAATTTAAACGCTAGAAGAACTCTCTTTTTTTTTGCCTTATGCTAGAACAAGAAAAAACAATGACCCAACTGCAAAAGATATGAATGTTTGCGAATAYCTAGTAAAGAGAGCTTGATTCGGCGAAACTTAATCAAAGAAAAAGCACCAGGAGGTCTGATGAAATGAAAAACGAATAAGAGTGATGGAAGAGAAAAAAATCAAAAAGCATGTGGGAAAGAGTCAGAGTCAGGACTTGGCAGAAATGAAATTTTGGGGTTTGAGGTTTCTATCCTACTAAGCTTAGCAATCAAGTTATTTGTTCCATTAGTGCAAAATTAGTACAAAGCATGTGTATGTGTGGGAACAACACACATAAAATATTTTCTACTAAAAGACAGTTCTACTTGAAGTTCTTCGATACAGTATCCTTTTCTCTACTCAAGGAACGAGTAACACATAAGAAAACTATTTGGGAACAACTTTCTATCCCGATCCTTCCGTTCAAACCACCAACCAAAAAACCTGTTATTTCAGGAGAACAGTATGTGAGAAGATGGACAATTGACATGAGGAACTGCTGAATTATGGCATAATTGCTGTTCTATTTCTAAAATGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAATTTAAACGCTAGAAGAAC</pcr_primer_p1>
		<pcr_primer_p2>CAAGTCCTGACTCTGACTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TGAAATTTAAACGCTAGAAGAACTCTCTTTTTTTTTGCCTTATGCTAGAACAAGAAAAAACAATGACCCAACTGCAAAAGATATGAATGTTTGCGAATATCTAGTAAAGAGAGCTTGATTCGGCGAAACTTAATCAAAGAAAAAGCACCAGGAGGTCTGATGAAATGAAAAACGAATAAGAGTGATGGAAGAGAAAAAAATCAAAAAGCATGTGGGAAAGAGTCAGAGTCAGGACTTG</canonical_amplicon>
		<polymorphic_amplicon>TGAAATTTAAACGCTAGAAGAACTCTCTTTTTTTTTGCCTTATGCTAGAACAAGAAAAAACAATGACCCAACTGCAAAAGATATGAATGTTTGCGAATAYCTAGTAAAGAGAGCTTGATTCGGCGAAACTTAATCAAAGAAAAAGCACCAGGAGGTCTGATGAAATGAAAAACGAATAAGAGTGATGGAAGAGAAAAAAATCAAAAAGCATGTGGGAAAGAGTCAGAGTCAGGACTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24318</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>30774</contig_pos>
        <strand>+</strand>
        <context>TTGGCAGAAA[C/T]GAAATTTTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATCAAAAAGCATGTGGGAAAGAGTCAGAGTCAGGACTTGGCAGAAA</left_flank>
        <right_flank>GAAATTTTGGGGTTTGAGGTTTCTATCCTACTAAGCTTAGCAATCAAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTCAATTTAAGTCTGTTTTACACCTTCCAAAGTTTTCAAAGTTATCGAAAACTTGACAGCTGAGCTGCAGGCTTCGCAAAATGGTTAGAAAAGCACAAAAAATCAACTGAAAATCAAATGAAAATCAAATAAAAAATACGTTTTCGTGTATCTTAATGGTCGATACAAACAAACGAAAACTAAAAACTTCGAAAAGTGTCGAGTCAAAAAAAAACTAAAAATGTAAAAGGTGAAATAGTGTTAAAAGCAGTGAAATTTAAACGCTAGAAGAACTCTCTTTTTTTTTGCCTTATGCTAGAACAAGAAAAAACAATGACCCAACTGCAAAAGATATGAATGTTTGCGAATATCTAGTAAAGAGAGCTTGATTCGGCGAAACTTAATCAAAGAAAAAGCACCAGGAGGTCTGATGAAATGAAAAACGAATAAGAGTGATGGAAGAGAAAAAAATCAAAAAGCATGTGGGAAAGAGTCAGAGTCAGGACTTGGCAGAAATGAAATTTTGGGGTTTGAGGTTTCTATCCTACTAAGCTTAGCAATCAAGTTATTTGTTCCATTAGTGCAAAATTAGTACAAAGCATGTGTATGTGTGGGAACAACACACATAAAATATTTTCTACTAAAAGACAGTTCTACTTGAAGTTCTTCGATACAGTATCCTTTTCTCTACTCAAGGAACGAGTAACACATAAGAAAACTATTTGGGAACAACTTTCTATCCCGATCCTTCCGTTCAAACCACCAACCAAAAAACCTGTTATTTCAGGAGAACAGTATGTGAGAAGATGGACAATTGACATGAGGAACTGCTGAATTATGGCATAATTGCTGTTCTATTTCTAAAATGACCTTGAATATTGAAAGTTGCGAGTTGTTTTAATTACAGGCGTGAACTCTGATTGGAACAAACTTCAAAATAATTATTATGGGAAGAAATTACCGTATTTCCTCTAATAGAAGCCCACCTCTATTTGTAGCCCACTCTGCCTGTTCATT</canonical>
            <polymorphic>ATTTTTCAATTTAAGTCTGTTTTACACCTTCCAAAGTTTTCAAAGTTATCGAAAACTTGACAGCTGAGCTGCAGGCTTCGCAAAATGGTTAGAAAAGCACAAAAAATCAACTGAAAATCAAATGAAAATCAAATAAAAAATACGTTTTCGTGTATCTTAATGGTCGATACAAACAAACGAAAACTAAAAACTTCGAAAAGTGTCGAGTCAAAAAAAAACTAAAAATGTAAAAGGTGAAATAGTGTTAAAAGCAGTGAAATTTAAACGCTAGAAGAACTCTCTTTTTTTTTGCCTTATGCTAGAACAAGAAAAAACAATGACCCAACTGCAAAAGATATGAATGTTTGCGAATATCTAGTAAAGAGAGCTTGATTCGGCGAAACTTAATCAAAGAAAAAGCACCAGGAGGTCTGATGAAATGAAAAACGAATAAGAGTGATGGAAGAGAAAAAAATCAAAAAGCATGTGGGAAAGAGTCAGAGTCAGGACTTGGCAGAAAYGAAATTTTGGGGTTTGAGGTTTCTATCCTACTAAGCTTAGCAATCAAGTTATTTGTTCCATTAGTGCAAAATTAGTACAAAGCATGTGTATGTGTGGGAACAACACACATAAAATATTTTCTACTAAAAGACAGTTCTACTTGAAGTTCTTCGATACAGTATCCTTTTCTCTACTCAAGGAACGAGTAACACATAAGAAAACTATTTGGGAACAACTTTCTATCCCGATCCTTCCGTTCAAACCACCAACCAAAAAACCTGTTATTTCAGGAGAACAGTATGTGAGAAGATGGACAATTGACATGAGGAACTGCTGAATTATGGCATAATTGCTGTTCTATTTCTAAAATGACCTTGAATATTGAAAGTTGCGAGTTGTTTTAATTACAGGCGTGAACTCTGATTGGAACAAACTTCAAAATAATTATTATGGGAAGAAATTACCGTATTTCCTCTAATAGAAGCCCACCTCTATTTGTAGCCCACTCTGCCTGTTCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACTGCAAAAGATATGAATGTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGCACTAATGGAACAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAACTGCAAAAGATATGAATGTTTGCGAATATCTAGTAAAGAGAGCTTGATTCGGCGAAACTTAATCAAAGAAAAAGCACCAGGAGGTCTGATGAAATGAAAAACGAATAAGAGTGATGGAAGAGAAAAAAATCAAAAAGCATGTGGGAAAGAGTCAGAGTCAGGACTTGGCAGAAATGAAATTTTGGGGTTTGAGGTTTCTATCCTACTAAGCTTAGCAATCAAGTTATTTGTTCCATTAGTGCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CAACTGCAAAAGATATGAATGTTTGCGAATATCTAGTAAAGAGAGCTTGATTCGGCGAAACTTAATCAAAGAAAAAGCACCAGGAGGTCTGATGAAATGAAAAACGAATAAGAGTGATGGAAGAGAAAAAAATCAAAAAGCATGTGGGAAAGAGTCAGAGTCAGGACTTGGCAGAAAYGAAATTTTGGGGTTTGAGGTTTCTATCCTACTAAGCTTAGCAATCAAGTTATTTGTTCCATTAGTGCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24319</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>30793</contig_pos>
        <strand>+</strand>
        <context>GGGGTTTGAG[A/G]TTTCTATCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAAAGAGTCAGAGTCAGGACTTGGCAGAAATGAAATTTTGGGGTTTGAG</left_flank>
        <right_flank>TTTCTATCCTACTAAGCTTAGCAATCAAGTTATTTGTTCCATTAGTGCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTACACCTTCCAAAGTTTTCAAAGTTATCGAAAACTTGACAGCTGAGCTGCAGGCTTCGCAAAATGGTTAGAAAAGCACAAAAAATCAACTGAAAATCAAATGAAAATCAAATAAAAAATACGTTTTCGTGTATCTTAATGGTCGATACAAACAAACGAAAACTAAAAACTTCGAAAAGTGTCGAGTCAAAAAAAAACTAAAAATGTAAAAGGTGAAATAGTGTTAAAAGCAGTGAAATTTAAACGCTAGAAGAACTCTCTTTTTTTTTGCCTTATGCTAGAACAAGAAAAAACAATGACCCAACTGCAAAAGATATGAATGTTTGCGAATATCTAGTAAAGAGAGCTTGATTCGGCGAAACTTAATCAAAGAAAAAGCACCAGGAGGTCTGATGAAATGAAAAACGAATAAGAGTGATGGAAGAGAAAAAAATCAAAAAGCATGTGGGAAAGAGTCAGAGTCAGGACTTGGCAGAAATGAAATTTTGGGGTTTGAGGTTTCTATCCTACTAAGCTTAGCAATCAAGTTATTTGTTCCATTAGTGCAAAATTAGTACAAAGCATGTGTATGTGTGGGAACAACACACATAAAATATTTTCTACTAAAAGACAGTTCTACTTGAAGTTCTTCGATACAGTATCCTTTTCTCTACTCAAGGAACGAGTAACACATAAGAAAACTATTTGGGAACAACTTTCTATCCCGATCCTTCCGTTCAAACCACCAACCAAAAAACCTGTTATTTCAGGAGAACAGTATGTGAGAAGATGGACAATTGACATGAGGAACTGCTGAATTATGGCATAATTGCTGTTCTATTTCTAAAATGACCTTGAATATTGAAAGTTGCGAGTTGTTTTAATTACAGGCGTGAACTCTGATTGGAACAAACTTCAAAATAATTATTATGGGAAGAAATTACCGTATTTCCTCTAATAGAAGCCCACCTCTATTTGTAGCCCACTCTGCCTGTTCATTTTTCTTTTCGGTTAGTGCA</canonical>
            <polymorphic>TTTTACACCTTCCAAAGTTTTCAAAGTTATCGAAAACTTGACAGCTGAGCTGCAGGCTTCGCAAAATGGTTAGAAAAGCACAAAAAATCAACTGAAAATCAAATGAAAATCAAATAAAAAATACGTTTTCGTGTATCTTAATGGTCGATACAAACAAACGAAAACTAAAAACTTCGAAAAGTGTCGAGTCAAAAAAAAACTAAAAATGTAAAAGGTGAAATAGTGTTAAAAGCAGTGAAATTTAAACGCTAGAAGAACTCTCTTTTTTTTTGCCTTATGCTAGAACAAGAAAAAACAATGACCCAACTGCAAAAGATATGAATGTTTGCGAATATCTAGTAAAGAGAGCTTGATTCGGCGAAACTTAATCAAAGAAAAAGCACCAGGAGGTCTGATGAAATGAAAAACGAATAAGAGTGATGGAAGAGAAAAAAATCAAAAAGCATGTGGGAAAGAGTCAGAGTCAGGACTTGGCAGAAATGAAATTTTGGGGTTTGAGRTTTCTATCCTACTAAGCTTAGCAATCAAGTTATTTGTTCCATTAGTGCAAAATTAGTACAAAGCATGTGTATGTGTGGGAACAACACACATAAAATATTTTCTACTAAAAGACAGTTCTACTTGAAGTTCTTCGATACAGTATCCTTTTCTCTACTCAAGGAACGAGTAACACATAAGAAAACTATTTGGGAACAACTTTCTATCCCGATCCTTCCGTTCAAACCACCAACCAAAAAACCTGTTATTTCAGGAGAACAGTATGTGAGAAGATGGACAATTGACATGAGGAACTGCTGAATTATGGCATAATTGCTGTTCTATTTCTAAAATGACCTTGAATATTGAAAGTTGCGAGTTGTTTTAATTACAGGCGTGAACTCTGATTGGAACAAACTTCAAAATAATTATTATGGGAAGAAATTACCGTATTTCCTCTAATAGAAGCCCACCTCTATTTGTAGCCCACTCTGCCTGTTCATTTTTCTTTTCGGTTAGTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGTCTGATGAAATGAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TCGAAGAACTTCAAGTAGAACTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAGGTCTGATGAAATGAAAAACGAATAAGAGTGATGGAAGAGAAAAAAATCAAAAAGCATGTGGGAAAGAGTCAGAGTCAGGACTTGGCAGAAATGAAATTTTGGGGTTTGAGGTTTCTATCCTACTAAGCTTAGCAATCAAGTTATTTGTTCCATTAGTGCAAAATTAGTACAAAGCATGTGTATGTGTGGGAACAACACACATAAAATATTTTCTACTAAAAGACAGTTCTACTTGAAGTTCTTCGA</canonical_amplicon>
		<polymorphic_amplicon>GAGGTCTGATGAAATGAAAAACGAATAAGAGTGATGGAAGAGAAAAAAATCAAAAAGCATGTGGGAAAGAGTCAGAGTCAGGACTTGGCAGAAATGAAATTTTGGGGTTTGAGRTTTCTATCCTACTAAGCTTAGCAATCAAGTTATTTGTTCCATTAGTGCAAAATTAGTACAAAGCATGTGTATGTGTGGGAACAACACACATAAAATATTTTCTACTAAAAGACAGTTCTACTTGAAGTTCTTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24320</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>55815</contig_pos>
        <strand>+</strand>
        <context>AAATCTCAAA[C/T]YCSAAAKTAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATAGAAAATAGAGAAAATGAAAATTATGGGATTAGAAAAATCTCAAA</left_flank>
        <right_flank>CCGAAATTACGTCAGACCTCGCCAAAAATTTTTCTAGATGAAAAATTCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTGCAACATAACTCATCTCGCGTGCGGATTTATTTTGGGTCAAACTGAAAAAAAGGTTTTCCGACGACAAAAAAGATGAATGTGTCGCTGTGAAAAGATTCCAATGGGGGTGCGGCGACGACGACCCCAACCCACACGAATAATTGATGCCAAGAGATAAAAGAGATACTATAAAGTGATTCAATCTTCAGCTCAATGAACTATCAAACGGAAATAAATTTGGGTGCATTTAGTGCTGGGTACAAACTAGATTTAAGGGAGTTTCTGAGGGAAAACAAATATATCTCAGTAAGCACTTGTAAATTGAAAAATCTTATCACTGTTAAATGCGGTAGTTCATTTTTTGAAAAAAAAATTGAAAACAATAATTCCATATTGCAAAAAGAATTTTCAAAATTGTTCTTAGAAACCTTCGAAAAGGAAAAGAATCAATGCAAAATTACACAAAAATAGAAAATAGAGAAAATGAAAATTATGGGATTAGAAAAATCTCAAACCCGAAATTACGTCAGACCTCGCCAAAAATTTTTCTAGATGAAAAATTCCAGATAGTCCGGTTATTTGATCCCAGTACTGATATTCCTATCCTACGACACATGTCTTTTTCTTATCTATTTTTTCAAAATCCGCTTAATTTTGGGTCTCTATGAGCCTTAGAAAATCCCGGAAACGAAATTCTGTGGCTGCAAAATAGAAAGGAATAAAACATGAAATGTGTACAAGACTAATAAAATTGAAACACTCTCAATGTGCGGTCACATAATTCATTTGAAGAGAGTGGTCTGAAAATTTAATATCAATTTTTTCCGAAAAAAAAACAGACCAGAGTTTTGACTTGACTATCTTGTTATTTTTTTTCTCAATGTTTTCCTTCTCCTGTGGAAGATTAGGCGAACAATTTTTAAGGATTATCGCGTATTGTCTGAAGTGTTATGTGGCCAGTAATTGTTTCAAAGTGGAAGCAGGGGAAAAAAGAAAACAAAGTTTCTTTTCTGCG</canonical>
            <polymorphic>TGTTTGCAACATAACTCATCTCGCGTGCGGATTTATTTTGGGTCAAACTGAAAAAAAGGTTTTCCGACGACAAAAAAGATGAATGTGTCGCTGTGAAAAGATTCCAATGGGGGTGCGGCGACGACGACCCCAACCCACACGAATAATTGATGCCAAGAGATAAAAGAGATACTATAAAGTGATTCAATCTTCAGCTCAATGAACTATCAAACGGAAATAAATTTGGGTGCATTTAGTGCTGGGTACAAACTAGATTTAAGGGAGTTTCTGAGGGAAAACAAATATATCTCAGTAAGCACTTGTAAATTGAAAAATCTTATCACTGTTAAATGCGGTAGTTCATTTTTTGAAAAAAAAATTGAAAACAATAATTCCATATTGCAAAAAGAATTTTCAAAATTGTTCTTAGAAACCTTCGAAAAGGAAAAGAATCAATGCAAAATTACACAAAAATAGAAAATAGAGAAAATGAAAATTATGGGATTAGAAAAATCTCAAAYCCGAAATTACGTCAGACCTCGCCAAAAATTTTTCTAGATGAAAAATTCCAGATAGTCCGGTTATTTGATCCCAGTACTGATATTCCTATCCTACGACACATGTCTTTTTCTTATCTATTTTTTCAAAATCCGCTTAATTTTGGGTCTCTATGAGCCTTAGAAAATCCCGGAAACGAAATTCTGTGGCTGCAAAATAGAAAGGAATAAAACATGAAATGTGTACAAGACTAATAAAATTGAAACACTCTCAATGTGCGGTCACATAATTCATTTGAAGAGAGTGGTCTGAAAATTTAATATCAATTTTTTCCGAAAAAAAAACAGACCAGAGTTTTGACTTGACTATCTTGTTATTTTTTTTCTCAATGTTTTCCTTCTCCTGTGGAAGATTAGGCGAACAATTTTTAAGGATTATCGCGTATTGTCTGAAGTGTTATGTGGCCAGTAATTGTTTCAAAGTGGAAGCAGGGGAAAAAAGAAAACAAAGTTTCTTTTCTGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTATCACTGTTAAATGCGGTAG</pcr_primer_p1>
		<pcr_primer_p2>GGACTATCTGGAATTTTTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTTATCACTGTTAAATGCGGTAGTTCATTTTTTGAAAAAAAAATTGAAAACAATAATTCCATATTGCAAAAAGAATTTTCAAAATTGTTCTTAGAAACCTTCGAAAAGGAAAAGAATCAATGCAAAATTACACAAAAATAGAAAATAGAGAAAATGAAAATTATGGGATTAGAAAAATCTCAAACCCGAAATTACGTCAGACCTCGCCAAAAATTTTTCTAGATGAAAAATTCCAGATAGTCC</canonical_amplicon>
		<polymorphic_amplicon>CTTATCACTGTTAAATGCGGTAGTTCATTTTTTGAAAAAAAAATTGAAAACAATAATTCCATATTGCAAAAAGAATTTTCAAAATTGTTCTTAGAAACCTTCGAAAAGGAAAAGAATCAATGCAAAATTACACAAAAATAGAAAATAGAGAAAATGAAAATTATGGGATTAGAAAAATCTCAAAYCCGAAATTACGTCAGACCTCGCCAAAAATTTTTCTAGATGAAAAATTCCAGATAGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24321</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>55816</contig_pos>
        <strand>+</strand>
        <context>AATCTCAAAY[C/T]CSAAAKTACG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATAGAAAATAGAGAAAATGAAAATTATGGGATTAGAAAAATCTCAAAC</left_flank>
        <right_flank>CGAAATTACGTCAGACCTCGCCAAAAATTTTTCTAGATGAAAAATTCCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTGCAACATAACTCATCTCGCGTGCGGATTTATTTTGGGTCAAACTGAAAAAAAGGTTTTCCGACGACAAAAAAGATGAATGTGTCGCTGTGAAAAGATTCCAATGGGGGTGCGGCGACGACGACCCCAACCCACACGAATAATTGATGCCAAGAGATAAAAGAGATACTATAAAGTGATTCAATCTTCAGCTCAATGAACTATCAAACGGAAATAAATTTGGGTGCATTTAGTGCTGGGTACAAACTAGATTTAAGGGAGTTTCTGAGGGAAAACAAATATATCTCAGTAAGCACTTGTAAATTGAAAAATCTTATCACTGTTAAATGCGGTAGTTCATTTTTTGAAAAAAAAATTGAAAACAATAATTCCATATTGCAAAAAGAATTTTCAAAATTGTTCTTAGAAACCTTCGAAAAGGAAAAGAATCAATGCAAAATTACACAAAAATAGAAAATAGAGAAAATGAAAATTATGGGATTAGAAAAATCTCAAACCCGAAATTACGTCAGACCTCGCCAAAAATTTTTCTAGATGAAAAATTCCAGATAGTCCGGTTATTTGATCCCAGTACTGATATTCCTATCCTACGACACATGTCTTTTTCTTATCTATTTTTTCAAAATCCGCTTAATTTTGGGTCTCTATGAGCCTTAGAAAATCCCGGAAACGAAATTCTGTGGCTGCAAAATAGAAAGGAATAAAACATGAAATGTGTACAAGACTAATAAAATTGAAACACTCTCAATGTGCGGTCACATAATTCATTTGAAGAGAGTGGTCTGAAAATTTAATATCAATTTTTTCCGAAAAAAAAACAGACCAGAGTTTTGACTTGACTATCTTGTTATTTTTTTTCTCAATGTTTTCCTTCTCCTGTGGAAGATTAGGCGAACAATTTTTAAGGATTATCGCGTATTGTCTGAAGTGTTATGTGGCCAGTAATTGTTTCAAAGTGGAAGCAGGGGAAAAAAGAAAACAAAGTTTCTTTTCTGCGA</canonical>
            <polymorphic>GTTTGCAACATAACTCATCTCGCGTGCGGATTTATTTTGGGTCAAACTGAAAAAAAGGTTTTCCGACGACAAAAAAGATGAATGTGTCGCTGTGAAAAGATTCCAATGGGGGTGCGGCGACGACGACCCCAACCCACACGAATAATTGATGCCAAGAGATAAAAGAGATACTATAAAGTGATTCAATCTTCAGCTCAATGAACTATCAAACGGAAATAAATTTGGGTGCATTTAGTGCTGGGTACAAACTAGATTTAAGGGAGTTTCTGAGGGAAAACAAATATATCTCAGTAAGCACTTGTAAATTGAAAAATCTTATCACTGTTAAATGCGGTAGTTCATTTTTTGAAAAAAAAATTGAAAACAATAATTCCATATTGCAAAAAGAATTTTCAAAATTGTTCTTAGAAACCTTCGAAAAGGAAAAGAATCAATGCAAAATTACACAAAAATAGAAAATAGAGAAAATGAAAATTATGGGATTAGAAAAATCTCAAACYCGAAATTACGTCAGACCTCGCCAAAAATTTTTCTAGATGAAAAATTCCAGATAGTCCGGTTATTTGATCCCAGTACTGATATTCCTATCCTACGACACATGTCTTTTTCTTATCTATTTTTTCAAAATCCGCTTAATTTTGGGTCTCTATGAGCCTTAGAAAATCCCGGAAACGAAATTCTGTGGCTGCAAAATAGAAAGGAATAAAACATGAAATGTGTACAAGACTAATAAAATTGAAACACTCTCAATGTGCGGTCACATAATTCATTTGAAGAGAGTGGTCTGAAAATTTAATATCAATTTTTTCCGAAAAAAAAACAGACCAGAGTTTTGACTTGACTATCTTGTTATTTTTTTTCTCAATGTTTTCCTTCTCCTGTGGAAGATTAGGCGAACAATTTTTAAGGATTATCGCGTATTGTCTGAAGTGTTATGTGGCCAGTAATTGTTTCAAAGTGGAAGCAGGGGAAAAAAGAAAACAAAGTTTCTTTTCTGCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTATCACTGTTAAATGCGGTAG</pcr_primer_p1>
		<pcr_primer_p2>GGACTATCTGGAATTTTTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTTATCACTGTTAAATGCGGTAGTTCATTTTTTGAAAAAAAAATTGAAAACAATAATTCCATATTGCAAAAAGAATTTTCAAAATTGTTCTTAGAAACCTTCGAAAAGGAAAAGAATCAATGCAAAATTACACAAAAATAGAAAATAGAGAAAATGAAAATTATGGGATTAGAAAAATCTCAAACCCGAAATTACGTCAGACCTCGCCAAAAATTTTTCTAGATGAAAAATTCCAGATAGTCC</canonical_amplicon>
		<polymorphic_amplicon>CTTATCACTGTTAAATGCGGTAGTTCATTTTTTGAAAAAAAAATTGAAAACAATAATTCCATATTGCAAAAAGAATTTTCAAAATTGTTCTTAGAAACCTTCGAAAAGGAAAAGAATCAATGCAAAATTACACAAAAATAGAAAATAGAGAAAATGAAAATTATGGGATTAGAAAAATCTCAAACYCGAAATTACGTCAGACCTCGCCAAAAATTTTTCTAGATGAAAAATTCCAGATAGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24322</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>55818</contig_pos>
        <strand>+</strand>
        <context>TCTCAAAYYC[C/G]AAAKTACGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATAGAAAATAGAGAAAATGAAAATTATGGGATTAGAAAAATCTCAAACCC</left_flank>
        <right_flank>AAATTACGTCAGACCTCGCCAAAAATTTTTCTAGATGAAAAATTCCAGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCAACATAACTCATCTCGCGTGCGGATTTATTTTGGGTCAAACTGAAAAAAAGGTTTTCCGACGACAAAAAAGATGAATGTGTCGCTGTGAAAAGATTCCAATGGGGGTGCGGCGACGACGACCCCAACCCACACGAATAATTGATGCCAAGAGATAAAAGAGATACTATAAAGTGATTCAATCTTCAGCTCAATGAACTATCAAACGGAAATAAATTTGGGTGCATTTAGTGCTGGGTACAAACTAGATTTAAGGGAGTTTCTGAGGGAAAACAAATATATCTCAGTAAGCACTTGTAAATTGAAAAATCTTATCACTGTTAAATGCGGTAGTTCATTTTTTGAAAAAAAAATTGAAAACAATAATTCCATATTGCAAAAAGAATTTTCAAAATTGTTCTTAGAAACCTTCGAAAAGGAAAAGAATCAATGCAAAATTACACAAAAATAGAAAATAGAGAAAATGAAAATTATGGGATTAGAAAAATCTCAAACCCGAAATTACGTCAGACCTCGCCAAAAATTTTTCTAGATGAAAAATTCCAGATAGTCCGGTTATTTGATCCCAGTACTGATATTCCTATCCTACGACACATGTCTTTTTCTTATCTATTTTTTCAAAATCCGCTTAATTTTGGGTCTCTATGAGCCTTAGAAAATCCCGGAAACGAAATTCTGTGGCTGCAAAATAGAAAGGAATAAAACATGAAATGTGTACAAGACTAATAAAATTGAAACACTCTCAATGTGCGGTCACATAATTCATTTGAAGAGAGTGGTCTGAAAATTTAATATCAATTTTTTCCGAAAAAAAAACAGACCAGAGTTTTGACTTGACTATCTTGTTATTTTTTTTCTCAATGTTTTCCTTCTCCTGTGGAAGATTAGGCGAACAATTTTTAAGGATTATCGCGTATTGTCTGAAGTGTTATGTGGCCAGTAATTGTTTCAAAGTGGAAGCAGGGGAAAAAAGAAAACAAAGTTTCTTTTCTGCGAAC</canonical>
            <polymorphic>TTGCAACATAACTCATCTCGCGTGCGGATTTATTTTGGGTCAAACTGAAAAAAAGGTTTTCCGACGACAAAAAAGATGAATGTGTCGCTGTGAAAAGATTCCAATGGGGGTGCGGCGACGACGACCCCAACCCACACGAATAATTGATGCCAAGAGATAAAAGAGATACTATAAAGTGATTCAATCTTCAGCTCAATGAACTATCAAACGGAAATAAATTTGGGTGCATTTAGTGCTGGGTACAAACTAGATTTAAGGGAGTTTCTGAGGGAAAACAAATATATCTCAGTAAGCACTTGTAAATTGAAAAATCTTATCACTGTTAAATGCGGTAGTTCATTTTTTGAAAAAAAAATTGAAAACAATAATTCCATATTGCAAAAAGAATTTTCAAAATTGTTCTTAGAAACCTTCGAAAAGGAAAAGAATCAATGCAAAATTACACAAAAATAGAAAATAGAGAAAATGAAAATTATGGGATTAGAAAAATCTCAAACCCSAAATTACGTCAGACCTCGCCAAAAATTTTTCTAGATGAAAAATTCCAGATAGTCCGGTTATTTGATCCCAGTACTGATATTCCTATCCTACGACACATGTCTTTTTCTTATCTATTTTTTCAAAATCCGCTTAATTTTGGGTCTCTATGAGCCTTAGAAAATCCCGGAAACGAAATTCTGTGGCTGCAAAATAGAAAGGAATAAAACATGAAATGTGTACAAGACTAATAAAATTGAAACACTCTCAATGTGCGGTCACATAATTCATTTGAAGAGAGTGGTCTGAAAATTTAATATCAATTTTTTCCGAAAAAAAAACAGACCAGAGTTTTGACTTGACTATCTTGTTATTTTTTTTCTCAATGTTTTCCTTCTCCTGTGGAAGATTAGGCGAACAATTTTTAAGGATTATCGCGTATTGTCTGAAGTGTTATGTGGCCAGTAATTGTTTCAAAGTGGAAGCAGGGGAAAAAAGAAAACAAAGTTTCTTTTCTGCGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTATCACTGTTAAATGCGGTAG</pcr_primer_p1>
		<pcr_primer_p2>GGACTATCTGGAATTTTTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTTATCACTGTTAAATGCGGTAGTTCATTTTTTGAAAAAAAAATTGAAAACAATAATTCCATATTGCAAAAAGAATTTTCAAAATTGTTCTTAGAAACCTTCGAAAAGGAAAAGAATCAATGCAAAATTACACAAAAATAGAAAATAGAGAAAATGAAAATTATGGGATTAGAAAAATCTCAAACCCGAAATTACGTCAGACCTCGCCAAAAATTTTTCTAGATGAAAAATTCCAGATAGTCC</canonical_amplicon>
		<polymorphic_amplicon>CTTATCACTGTTAAATGCGGTAGTTCATTTTTTGAAAAAAAAATTGAAAACAATAATTCCATATTGCAAAAAGAATTTTCAAAATTGTTCTTAGAAACCTTCGAAAAGGAAAAGAATCAATGCAAAATTACACAAAAATAGAAAATAGAGAAAATGAAAATTATGGGATTAGAAAAATCTCAAACCCSAAATTACGTCAGACCTCGCCAAAAATTTTTCTAGATGAAAAATTCCAGATAGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24323</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>55822</contig_pos>
        <strand>+</strand>
        <context>AAAYYCSAAA[G/T]TACGTCAGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAATAGAGAAAATGAAAATTATGGGATTAGAAAAATCTCAAACCCGAAA</left_flank>
        <right_flank>TACGTCAGACCTCGCCAAAAATTTTTCTAGATGAAAAATTCCAGATAGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACATAACTCATCTCGCGTGCGGATTTATTTTGGGTCAAACTGAAAAAAAGGTTTTCCGACGACAAAAAAGATGAATGTGTCGCTGTGAAAAGATTCCAATGGGGGTGCGGCGACGACGACCCCAACCCACACGAATAATTGATGCCAAGAGATAAAAGAGATACTATAAAGTGATTCAATCTTCAGCTCAATGAACTATCAAACGGAAATAAATTTGGGTGCATTTAGTGCTGGGTACAAACTAGATTTAAGGGAGTTTCTGAGGGAAAACAAATATATCTCAGTAAGCACTTGTAAATTGAAAAATCTTATCACTGTTAAATGCGGTAGTTCATTTTTTGAAAAAAAAATTGAAAACAATAATTCCATATTGCAAAAAGAATTTTCAAAATTGTTCTTAGAAACCTTCGAAAAGGAAAAGAATCAATGCAAAATTACACAAAAATAGAAAATAGAGAAAATGAAAATTATGGGATTAGAAAAATCTCAAACCCGAAATTACGTCAGACCTCGCCAAAAATTTTTCTAGATGAAAAATTCCAGATAGTCCGGTTATTTGATCCCAGTACTGATATTCCTATCCTACGACACATGTCTTTTTCTTATCTATTTTTTCAAAATCCGCTTAATTTTGGGTCTCTATGAGCCTTAGAAAATCCCGGAAACGAAATTCTGTGGCTGCAAAATAGAAAGGAATAAAACATGAAATGTGTACAAGACTAATAAAATTGAAACACTCTCAATGTGCGGTCACATAATTCATTTGAAGAGAGTGGTCTGAAAATTTAATATCAATTTTTTCCGAAAAAAAAACAGACCAGAGTTTTGACTTGACTATCTTGTTATTTTTTTTCTCAATGTTTTCCTTCTCCTGTGGAAGATTAGGCGAACAATTTTTAAGGATTATCGCGTATTGTCTGAAGTGTTATGTGGCCAGTAATTGTTTCAAAGTGGAAGCAGGGGAAAAAAGAAAACAAAGTTTCTTTTCTGCGAACAAAG</canonical>
            <polymorphic>AACATAACTCATCTCGCGTGCGGATTTATTTTGGGTCAAACTGAAAAAAAGGTTTTCCGACGACAAAAAAGATGAATGTGTCGCTGTGAAAAGATTCCAATGGGGGTGCGGCGACGACGACCCCAACCCACACGAATAATTGATGCCAAGAGATAAAAGAGATACTATAAAGTGATTCAATCTTCAGCTCAATGAACTATCAAACGGAAATAAATTTGGGTGCATTTAGTGCTGGGTACAAACTAGATTTAAGGGAGTTTCTGAGGGAAAACAAATATATCTCAGTAAGCACTTGTAAATTGAAAAATCTTATCACTGTTAAATGCGGTAGTTCATTTTTTGAAAAAAAAATTGAAAACAATAATTCCATATTGCAAAAAGAATTTTCAAAATTGTTCTTAGAAACCTTCGAAAAGGAAAAGAATCAATGCAAAATTACACAAAAATAGAAAATAGAGAAAATGAAAATTATGGGATTAGAAAAATCTCAAACCCGAAAKTACGTCAGACCTCGCCAAAAATTTTTCTAGATGAAAAATTCCAGATAGTCCGGTTATTTGATCCCAGTACTGATATTCCTATCCTACGACACATGTCTTTTTCTTATCTATTTTTTCAAAATCCGCTTAATTTTGGGTCTCTATGAGCCTTAGAAAATCCCGGAAACGAAATTCTGTGGCTGCAAAATAGAAAGGAATAAAACATGAAATGTGTACAAGACTAATAAAATTGAAACACTCTCAATGTGCGGTCACATAATTCATTTGAAGAGAGTGGTCTGAAAATTTAATATCAATTTTTTCCGAAAAAAAAACAGACCAGAGTTTTGACTTGACTATCTTGTTATTTTTTTTCTCAATGTTTTCCTTCTCCTGTGGAAGATTAGGCGAACAATTTTTAAGGATTATCGCGTATTGTCTGAAGTGTTATGTGGCCAGTAATTGTTTCAAAGTGGAAGCAGGGGAAAAAAGAAAACAAAGTTTCTTTTCTGCGAACAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>137 98 92 85 75 61 58 52 47 43 41 33 31 30 26 22 19 17 13 11 9</canonical_bands>
                <polymorphic_bands>137 98 92 85 75 61 58 53 52 47 43 41 33 30 26 19 17 13 11 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTATCACTGTTAAATGCGGTAG</pcr_primer_p1>
		<pcr_primer_p2>ATAACCGGACTATCTGGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTATCACTGTTAAATGCGGTAGTTCATTTTTTGAAAAAAAAATTGAAAACAATAATTCCATATTGCAAAAAGAATTTTCAAAATTGTTCTTAGAAACCTTCGAAAAGGAAAAGAATCAATGCAAAATTACACAAAAATAGAAAATAGAGAAAATGAAAATTATGGGATTAGAAAAATCTCAAACCCGAAATTACGTCAGACCTCGCCAAAAATTTTTCTAGATGAAAAATTCCAGATAGTCCGGTTAT</canonical_amplicon>
		<polymorphic_amplicon>CTTATCACTGTTAAATGCGGTAGTTCATTTTTTGAAAAAAAAATTGAAAACAATAATTCCATATTGCAAAAAGAATTTTCAAAATTGTTCTTAGAAACCTTCGAAAAGGAAAAGAATCAATGCAAAATTACACAAAAATAGAAAATAGAGAAAATGAAAATTATGGGATTAGAAAAATCTCAAACCCGAAAKTACGTCAGACCTCGCCAAAAATTTTTCTAGATGAAAAATTCCAGATAGTCCGGTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24324</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>60342</contig_pos>
        <strand>+</strand>
        <context>TAAAAGTTGA[A/T]CTKCWGAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATCACTGAAAAGTATCTAACTTTTGTTCAACAAACAGAGTAAAAGTTGA</left_flank>
        <right_flank>CTTCTGAATTAATAATGACACTTCTTGAGTTAGACATTCTCACAGCTTGA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTCGAATTACTAGAATATAAACAATCACACATCTAGAAGAGTCTATGAATCTATGAAGTATACAAAATTGAAAATTGATACTCACCTGGAAGTTTTCACAAACTATGAAAGCGAAAAAAAATCGAAAGTGAAATTTCGGAGCAAATAAAAGCGGAATGACTTTATGAAAAATAAAGTGGGGGTGGGAGAGGTGTGGCTGGAGTATTGGGGTCTTAGAATTTCTGAACATTGAAGTGAGTAGGTGGGGTTTTACGAAATGGGACGAGAATCCAGATTTAGCTTTCTAAAAGAATTGAGTACAAAAACTATTTTGTATTTCATCCTTGTCCAAGGGTGATCGGAAATTTATCGAAATTGGAGAACTTTATACATATTTTCAAAGCCATAATTAGTAATATAAAACATTTCATCTAGATTAAAAAAAAACTTATCTTTTCAAAACCAAATTATCACTGAAAAGTATCTAACTTTTGTTCAACAAACAGAGTAAAAGTTGAACTTCTGAATTAATAATGACACTTCTTGAGTTAGACATTCTCACAGCTTGAAAAAGTCACGTGACATACTACTCTTTGCCCTTACGTTTCTAAAAAGTTAGTGAGGGAGGGAGTTAAGATCAAAAAATTGAAAAAAAATCTCCACTTTCGACATGTCCATATAATTAGACAAGGTACACACAGACATATTATAGATTGCATAAAATCAATTTTTAAAAAAAGTTTTCAAAATTTCGGAAAAAATGATTTTTCATGTGGGCACATTCTTTCCGATTTTCTCATGAAAAATTGACACCGAAGCTCAGATTTTGCGGCAAGAAAAAATTTTTTAAAAAGTGGAAAGATACTTTCGCATGTTGTACTGAACTTTTTTTTTAATTTTTAATTAATCTTCTTGAGATCTGCGAAAAAGTCTCCAAAATGAAACATGTGACAGATGAGAAGAAACTGAGAAAATAGATGAACCGAATTTTTTTGGTTTTTTGATAAATGAAGTGGAAA</canonical>
            <polymorphic>TACTCGAATTACTAGAATATAAACAATCACACATCTAGAAGAGTCTATGAATCTATGAAGTATACAAAATTGAAAATTGATACTCACCTGGAAGTTTTCACAAACTATGAAAGCGAAAAAAAATCGAAAGTGAAATTTCGGAGCAAATAAAAGCGGAATGACTTTATGAAAAATAAAGTGGGGGTGGGAGAGGTGTGGCTGGAGTATTGGGGTCTTAGAATTTCTGAACATTGAAGTGAGTAGGTGGGGTTTTACGAAATGGGACGAGAATCCAGATTTAGCTTTCTAAAAGAATTGAGTACAAAAACTATTTTGTATTTCATCCTTGTCCAAGGGTGATCGGAAATTTATCGAAATTGGAGAACTTTATACATATTTTCAAAGCCATAATTAGTAATATAAAACATTTCATCTAGATTAAAAAAAAACTTATCTTTTCAAAACCAAATTATCACTGAAAAGTATCTAACTTTTGTTCAACAAACAGAGTAAAAGTTGAWCTTCTGAATTAATAATGACACTTCTTGAGTTAGACATTCTCACAGCTTGAAAAAGTCACGTGACATACTACTCTTTGCCCTTACGTTTCTAAAAAGTTAGTGAGGGAGGGAGTTAAGATCAAAAAATTGAAAAAAAATCTCCACTTTCGACATGTCCATATAATTAGACAAGGTACACACAGACATATTATAGATTGCATAAAATCAATTTTTAAAAAAAGTTTTCAAAATTTCGGAAAAAATGATTTTTCATGTGGGCACATTCTTTCCGATTTTCTCATGAAAAATTGACACCGAAGCTCAGATTTTGCGGCAAGAAAAAATTTTTTAAAAAGTGGAAAGATACTTTCGCATGTTGTACTGAACTTTTTTTTTAATTTTTAATTAATCTTCTTGAGATCTGCGAAAAAGTCTCCAAAATGAAACATGTGACAGATGAGAAGAAACTGAGAAAATAGATGAACCGAATTTTTTTGGTTTTTTGATAAATGAAGTGGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTATCGAAATTGGAGAACTTT</pcr_primer_p1>
		<pcr_primer_p2>AACGTAAGGGCAAAGAGTAGTAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ATTTATCGAAATTGGAGAACTTTATACATATTTTCAAAGCCATAATTAGTAATATAAAACATTTCATCTAGATTAAAAAAAAACTTATCTTTTCAAAACCAAATTATCACTGAAAAGTATCTAACTTTTGTTCAACAAACAGAGTAAAAGTTGAACTTCTGAATTAATAATGACACTTCTTGAGTTAGACATTCTCACAGCTTGAAAAAGTCACGTGACATACTACTCTTTGCCCTTACGTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTATCGAAATTGGAGAACTTTATACATATTTTCAAAGCCATAATTAGTAATATAAAACATTTCATCTAGATTAAAAAAAAACTTATCTTTTCAAAACCAAATTATCACTGAAAAGTATCTAACTTTTGTTCAACAAACAGAGTAAAAGTTGAWCTTCTGAATTAATAATGACACTTCTTGAGTTAGACATTCTCACAGCTTGAAAAAGTCACGTGACATACTACTCTTTGCCCTTACGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24325</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>60345</contig_pos>
        <strand>+</strand>
        <context>AAGTTGAWCT[G/T]CWGAATTAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CACTGAAAAGTATCTAACTTTTGTTCAACAAACAGAGTAAAAGTTGAACT</left_flank>
        <right_flank>CTGAATTAATAATGACACTTCTTGAGTTAGACATTCTCACAGCTTGAAAA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAATTACTAGAATATAAACAATCACACATCTAGAAGAGTCTATGAATCTATGAAGTATACAAAATTGAAAATTGATACTCACCTGGAAGTTTTCACAAACTATGAAAGCGAAAAAAAATCGAAAGTGAAATTTCGGAGCAAATAAAAGCGGAATGACTTTATGAAAAATAAAGTGGGGGTGGGAGAGGTGTGGCTGGAGTATTGGGGTCTTAGAATTTCTGAACATTGAAGTGAGTAGGTGGGGTTTTACGAAATGGGACGAGAATCCAGATTTAGCTTTCTAAAAGAATTGAGTACAAAAACTATTTTGTATTTCATCCTTGTCCAAGGGTGATCGGAAATTTATCGAAATTGGAGAACTTTATACATATTTTCAAAGCCATAATTAGTAATATAAAACATTTCATCTAGATTAAAAAAAAACTTATCTTTTCAAAACCAAATTATCACTGAAAAGTATCTAACTTTTGTTCAACAAACAGAGTAAAAGTTGAACTTCTGAATTAATAATGACACTTCTTGAGTTAGACATTCTCACAGCTTGAAAAAGTCACGTGACATACTACTCTTTGCCCTTACGTTTCTAAAAAGTTAGTGAGGGAGGGAGTTAAGATCAAAAAATTGAAAAAAAATCTCCACTTTCGACATGTCCATATAATTAGACAAGGTACACACAGACATATTATAGATTGCATAAAATCAATTTTTAAAAAAAGTTTTCAAAATTTCGGAAAAAATGATTTTTCATGTGGGCACATTCTTTCCGATTTTCTCATGAAAAATTGACACCGAAGCTCAGATTTTGCGGCAAGAAAAAATTTTTTAAAAAGTGGAAAGATACTTTCGCATGTTGTACTGAACTTTTTTTTTAATTTTTAATTAATCTTCTTGAGATCTGCGAAAAAGTCTCCAAAATGAAACATGTGACAGATGAGAAGAAACTGAGAAAATAGATGAACCGAATTTTTTTGGTTTTTTGATAAATGAAGTGGAAAGGT</canonical>
            <polymorphic>TCGAATTACTAGAATATAAACAATCACACATCTAGAAGAGTCTATGAATCTATGAAGTATACAAAATTGAAAATTGATACTCACCTGGAAGTTTTCACAAACTATGAAAGCGAAAAAAAATCGAAAGTGAAATTTCGGAGCAAATAAAAGCGGAATGACTTTATGAAAAATAAAGTGGGGGTGGGAGAGGTGTGGCTGGAGTATTGGGGTCTTAGAATTTCTGAACATTGAAGTGAGTAGGTGGGGTTTTACGAAATGGGACGAGAATCCAGATTTAGCTTTCTAAAAGAATTGAGTACAAAAACTATTTTGTATTTCATCCTTGTCCAAGGGTGATCGGAAATTTATCGAAATTGGAGAACTTTATACATATTTTCAAAGCCATAATTAGTAATATAAAACATTTCATCTAGATTAAAAAAAAACTTATCTTTTCAAAACCAAATTATCACTGAAAAGTATCTAACTTTTGTTCAACAAACAGAGTAAAAGTTGAACTKCTGAATTAATAATGACACTTCTTGAGTTAGACATTCTCACAGCTTGAAAAAGTCACGTGACATACTACTCTTTGCCCTTACGTTTCTAAAAAGTTAGTGAGGGAGGGAGTTAAGATCAAAAAATTGAAAAAAAATCTCCACTTTCGACATGTCCATATAATTAGACAAGGTACACACAGACATATTATAGATTGCATAAAATCAATTTTTAAAAAAAGTTTTCAAAATTTCGGAAAAAATGATTTTTCATGTGGGCACATTCTTTCCGATTTTCTCATGAAAAATTGACACCGAAGCTCAGATTTTGCGGCAAGAAAAAATTTTTTAAAAAGTGGAAAGATACTTTCGCATGTTGTACTGAACTTTTTTTTTAATTTTTAATTAATCTTCTTGAGATCTGCGAAAAAGTCTCCAAAATGAAACATGTGACAGATGAGAAGAAACTGAGAAAATAGATGAACCGAATTTTTTTGGTTTTTTGATAAATGAAGTGGAAAGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>230 200 163 137 117 85 35 33</canonical_bands>
                <polymorphic_bands>393 200 137 117 85 35 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTATCGAAATTGGAGAACTTT</pcr_primer_p1>
		<pcr_primer_p2>AACGTAAGGGCAAAGAGTAGTAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ATTTATCGAAATTGGAGAACTTTATACATATTTTCAAAGCCATAATTAGTAATATAAAACATTTCATCTAGATTAAAAAAAAACTTATCTTTTCAAAACCAAATTATCACTGAAAAGTATCTAACTTTTGTTCAACAAACAGAGTAAAAGTTGAACTTCTGAATTAATAATGACACTTCTTGAGTTAGACATTCTCACAGCTTGAAAAAGTCACGTGACATACTACTCTTTGCCCTTACGTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTATCGAAATTGGAGAACTTTATACATATTTTCAAAGCCATAATTAGTAATATAAAACATTTCATCTAGATTAAAAAAAAACTTATCTTTTCAAAACCAAATTATCACTGAAAAGTATCTAACTTTTGTTCAACAAACAGAGTAAAAGTTGAACTKCTGAATTAATAATGACACTTCTTGAGTTAGACATTCTCACAGCTTGAAAAAGTCACGTGACATACTACTCTTTGCCCTTACGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24326</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>60347</contig_pos>
        <strand>+</strand>
        <context>GTTGAWCTKC[A/T]GAATTAATAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGAAAAGTATCTAACTTTTGTTCAACAAACAGAGTAAAAGTTGAACTTC</left_flank>
        <right_flank>GAATTAATAATGACACTTCTTGAGTTAGACATTCTCACAGCTTGAAAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTACTAGAATATAAACAATCACACATCTAGAAGAGTCTATGAATCTATGAAGTATACAAAATTGAAAATTGATACTCACCTGGAAGTTTTCACAAACTATGAAAGCGAAAAAAAATCGAAAGTGAAATTTCGGAGCAAATAAAAGCGGAATGACTTTATGAAAAATAAAGTGGGGGTGGGAGAGGTGTGGCTGGAGTATTGGGGTCTTAGAATTTCTGAACATTGAAGTGAGTAGGTGGGGTTTTACGAAATGGGACGAGAATCCAGATTTAGCTTTCTAAAAGAATTGAGTACAAAAACTATTTTGTATTTCATCCTTGTCCAAGGGTGATCGGAAATTTATCGAAATTGGAGAACTTTATACATATTTTCAAAGCCATAATTAGTAATATAAAACATTTCATCTAGATTAAAAAAAAACTTATCTTTTCAAAACCAAATTATCACTGAAAAGTATCTAACTTTTGTTCAACAAACAGAGTAAAAGTTGAACTTCTGAATTAATAATGACACTTCTTGAGTTAGACATTCTCACAGCTTGAAAAAGTCACGTGACATACTACTCTTTGCCCTTACGTTTCTAAAAAGTTAGTGAGGGAGGGAGTTAAGATCAAAAAATTGAAAAAAAATCTCCACTTTCGACATGTCCATATAATTAGACAAGGTACACACAGACATATTATAGATTGCATAAAATCAATTTTTAAAAAAAGTTTTCAAAATTTCGGAAAAAATGATTTTTCATGTGGGCACATTCTTTCCGATTTTCTCATGAAAAATTGACACCGAAGCTCAGATTTTGCGGCAAGAAAAAATTTTTTAAAAAGTGGAAAGATACTTTCGCATGTTGTACTGAACTTTTTTTTTAATTTTTAATTAATCTTCTTGAGATCTGCGAAAAAGTCTCCAAAATGAAACATGTGACAGATGAGAAGAAACTGAGAAAATAGATGAACCGAATTTTTTTGGTTTTTTGATAAATGAAGTGGAAAGGTAG</canonical>
            <polymorphic>GAATTACTAGAATATAAACAATCACACATCTAGAAGAGTCTATGAATCTATGAAGTATACAAAATTGAAAATTGATACTCACCTGGAAGTTTTCACAAACTATGAAAGCGAAAAAAAATCGAAAGTGAAATTTCGGAGCAAATAAAAGCGGAATGACTTTATGAAAAATAAAGTGGGGGTGGGAGAGGTGTGGCTGGAGTATTGGGGTCTTAGAATTTCTGAACATTGAAGTGAGTAGGTGGGGTTTTACGAAATGGGACGAGAATCCAGATTTAGCTTTCTAAAAGAATTGAGTACAAAAACTATTTTGTATTTCATCCTTGTCCAAGGGTGATCGGAAATTTATCGAAATTGGAGAACTTTATACATATTTTCAAAGCCATAATTAGTAATATAAAACATTTCATCTAGATTAAAAAAAAACTTATCTTTTCAAAACCAAATTATCACTGAAAAGTATCTAACTTTTGTTCAACAAACAGAGTAAAAGTTGAACTTCWGAATTAATAATGACACTTCTTGAGTTAGACATTCTCACAGCTTGAAAAAGTCACGTGACATACTACTCTTTGCCCTTACGTTTCTAAAAAGTTAGTGAGGGAGGGAGTTAAGATCAAAAAATTGAAAAAAAATCTCCACTTTCGACATGTCCATATAATTAGACAAGGTACACACAGACATATTATAGATTGCATAAAATCAATTTTTAAAAAAAGTTTTCAAAATTTCGGAAAAAATGATTTTTCATGTGGGCACATTCTTTCCGATTTTCTCATGAAAAATTGACACCGAAGCTCAGATTTTGCGGCAAGAAAAAATTTTTTAAAAAGTGGAAAGATACTTTCGCATGTTGTACTGAACTTTTTTTTTAATTTTTAATTAATCTTCTTGAGATCTGCGAAAAAGTCTCCAAAATGAAACATGTGACAGATGAGAAGAAACTGAGAAAATAGATGAACCGAATTTTTTTGGTTTTTTGATAAATGAAGTGGAAAGGTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTATCGAAATTGGAGAACTTT</pcr_primer_p1>
		<pcr_primer_p2>AACGTAAGGGCAAAGAGTAGTAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ATTTATCGAAATTGGAGAACTTTATACATATTTTCAAAGCCATAATTAGTAATATAAAACATTTCATCTAGATTAAAAAAAAACTTATCTTTTCAAAACCAAATTATCACTGAAAAGTATCTAACTTTTGTTCAACAAACAGAGTAAAAGTTGAACTTCTGAATTAATAATGACACTTCTTGAGTTAGACATTCTCACAGCTTGAAAAAGTCACGTGACATACTACTCTTTGCCCTTACGTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTATCGAAATTGGAGAACTTTATACATATTTTCAAAGCCATAATTAGTAATATAAAACATTTCATCTAGATTAAAAAAAAACTTATCTTTTCAAAACCAAATTATCACTGAAAAGTATCTAACTTTTGTTCAACAAACAGAGTAAAAGTTGAACTTCWGAATTAATAATGACACTTCTTGAGTTAGACATTCTCACAGCTTGAAAAAGTCACGTGACATACTACTCTTTGCCCTTACGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24327</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>129765</contig_pos>
        <strand>+</strand>
        <context>TTTTAGATGG[A/T]TTAGAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGAATGTTTCTACAGAAAACTTGAAAAATCCCTAAAAAGTTTTAGATGG</left_flank>
        <right_flank>TTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCTCCATATCGATCGGTTGTGAAGACAACCGTACTTCCTCCATCGCAGAACTCAAATCATTCATTTCTTTATTCAAAGAACTCATCCTACCCTAAAAGATTTTTCATGAAGCTTTAAAGAAGAAAAGAAACGGCGAGAAAAGAGTAAAAATGGAAAATAGAAAGTCGAGAAACGAGAAAGATGGAATGGTGAGAGACACGACGGAGTAATTGTGGAGGAATAAAGGGAGAACTGTATATGTAATGCACTCTTTTTTTTTCTTTTTTTGACTCAACAGCGGCATCATCTTTTTTTGTGTGTGGGACACATACGAATGGAAAAAAACTGGCCGTTTTGAGTCGTTTGCAATTGGTGTCAATGTAAAGCCGATAGAGAGCGAATAGTAGGAAATTAACTGATGAATCCAACAAAAAATGCACTGCAAATCTTAATCAATAACAATTCAAATAGAATGTTTCTACAGAAAACTTGAAAAATCCCTAAAAAGTTTTAGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCA</canonical>
            <polymorphic>CTCCTCCATATCGATCGGTTGTGAAGACAACCGTACTTCCTCCATCGCAGAACTCAAATCATTCATTTCTTTATTCAAAGAACTCATCCTACCCTAAAAGATTTTTCATGAAGCTTTAAAGAAGAAAAGAAACGGCGAGAAAAGAGTAAAAATGGAAAATAGAAAGTCGAGAAACGAGAAAGATGGAATGGTGAGAGACACGACGGAGTAATTGTGGAGGAATAAAGGGAGAACTGTATATGTAATGCACTCTTTTTTTTTCTTTTTTTGACTCAACAGCGGCATCATCTTTTTTTGTGTGTGGGACACATACGAATGGAAAAAAACTGGCCGTTTTGAGTCGTTTGCAATTGGTGTCAATGTAAAGCCGATAGAGAGCGAATAGTAGGAAATTAACTGATGAATCCAACAAAAAATGCACTGCAAATCTTAATCAATAACAATTCAAATAGAATGTTTCTACAGAAAACTTGAAAAATCCCTAAAAAGTTTTAGATGGWTTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTTTTTTCTTGAAAATTTTTTTCAAAAATGAAGAAAAAACTTTCCACACCTCGAAAAGAAAGAAAAAAAATCAAAAGTTGGGAAATTTATACAGTTTCCCAGTTCCAAAAATGAGCGTTCCCACCATTTTTGTCAGTTGACCAAAAACCATTTTGGCGTTGTTTTTCTTGCACTTTTACGGTTCCGAAAATTGTGACTCCTCCAGTAAAAATTTGAAAATTTCAAGAACAAATTGCAGGTTACAAACGTTTAATGTTCGTTACTTTAAAACTAGAACTTTCGACATTCCAGTTCAATAAAAATAAAAATGTAGGAAATAAAAATTTAGTCTTCGTAATGATCATCGAAATTCATTCAAAATATACAGTACCAACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGAATAGTAGGAAATTAACTGA</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGTTTCAATTTTCCAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCGAATAGTAGGAAATTAACTGATGAATCCAACAAAAAATGCACTGCAAATCTTAATCAATAACAATTCAAATAGAATGTTTCTACAGAAAACTTGAAAAATCCCTAAAAAGTTTTAGATGGATTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GCGAATAGTAGGAAATTAACTGATGAATCCAACAAAAAATGCACTGCAAATCTTAATCAATAACAATTCAAATAGAATGTTTCTACAGAAAACTTGAAAAATCCCTAAAAAGTTTTAGATGGWTTAGAAAAAAACGGAGGAAAAAGTATTTTTCCATCTCTGAAACATAAATCACTAGGAAGACTTGAGAAAGAGAAAATAATGGGTTGAGAATGGAATAAAAAAATGAACTGGAAAATTGAAACTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24328</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>133126</contig_pos>
        <strand>+</strand>
        <context>AACTGAAATC[A/G]TTTGTATTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCGATTTTCAAATGATCACTTTTCCTGTTGCTTCATTCGAACTGAAATC</left_flank>
        <right_flank>TTTGTATTACATAATTATAATTTTGATGAGAGAGTAGAATAAGAAATAAT</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACAATGCCAAAAAACTCCCATTAACCCTTTCAAATACTCACTCCAAAAGTGAGAAATTAGTACTGAAATCACTTAAACAGCCCATAACTCGACTTCTAGAAATTTGTAAAAAAAATGAAAACCAAATACATCAAAAGAAAGCCCGTATTTGAAACTATAAATGAGCAAATTTAGAAAAAATTCTGAGATGAAGGCTAAACATGGTTCCCTTGTAAGGTGCTTTGTTTGTTAAGATAGTAGACCTGCTTCATCTCCTCAACAGCAACAATTCCTCCTGATCCTGCCCAGTACCTGAAACATTTTAATCCCTAAACTGACTGAAACTCCTTTTGTTATTGATTCATTGAGCTCTTTCCTCAAATCAGTGCTTCCGAACTTCTTCATCTTTGACATCGCCATGCCCCGAACATTCGGAAAGCATACATCTCGCTTTTCACAGCAATACATTCCGATTTTCAAATGATCACTTTTCCTGTTGCTTCATTCGAACTGAAATCGTTTGTATTACATAATTATAATTTTGATGAGAGAGTAGAATAAGAAATAATGAAAACTAGGTTGGAACTCCGACAAAATTTAAAAAACCAAACAAAGAAGAGCCACAAAAACTTCGGCTGGTTTTGCGAGTAATAAACCGGGCGACTGAGCCTGGAGGGTCCCGAGGCTCCGCAAGCTCCGCCCATTTCTGCCGCACACTGAACTCACCGTGCACACACGGCACTCATAGCGTTCTAAAAACAGAGAAAACCTCAACAATCGAAATTCGGATAGTGTGAGTGAGAAGAAAGAGCGGCGCTTTATGTTTCAGAAATTGTGAGTAGAGCCAACCAAATTACCGGGTTGAGGTTTGGCATTCATTTCTCGACTTGGACAACTAAAACATGTGACGATCATCGAATGGATGAGTTTCAAGAGAAAGAAAATGAGACAGGAAAAAAAAGTGGAATGACGAATCTAATGGTATGGTCGGAAGCTCTTTGATGGAGAAGGAAGACACT</canonical>
            <polymorphic>AAACAATGCCAAAAAACTCCCATTAACCCTTTCAAATACTCACTCCAAAAGTGAGAAATTAGTACTGAAATCACTTAAACAGCCCATAACTCGACTTCTAGAAATTTGTAAAAAAAATGAAAACCAAATACATCAAAAGAAAGCCCGTATTTGAAACTATAAATGAGCAAATTTAGAAAAAATTCTGAGATGAAGGCTAAACATGGTTCCCTTGTAAGGTGCTTTGTTTGTTAAGATAGTAGACCTGCTTCATCTCCTCAACAGCAACAATTCCTCCTGATCCTGCCCAGTACCTGAAACATTTTAATCCCTAAACTGACTGAAACTCCTTTTGTTATTGATTCATTGAGCTCTTTCCTCAAATCAGTGCTTCCGAACTTCTTCATCTTTGACATCGCCATGCCCCGAACATTCGGAAAGCATACATCTCGCTTTTCACAGCAATACATTCCGATTTTCAAATGATCACTTTTCCTGTTGCTTCATTCGAACTGAAATCRTTTGTATTACATAATTATAATTTTGATGAGAGAGTAGAATAAGAAATAATGAAAACTAGGTTGGAACTCCGACAAAATTTAAAAAACCAAACAAAGAAGAGCCACAAAAACTTCGGCTGGTTTTGCGAGTAATAAACCGGGCGACTGAGCCTGGAGGGTCCCGAGGCTCCGCAAGCTCCGCCCATTTCTGCCGCACACTGAACTCACCGTGCACACACGGCACTCATAGCGTTCTAAAAACAGAGAAAACCTCAACAATCGAAATTCGGATAGTGTGAGTGAGAAGAAAGAGCGGCGCTTTATGTTTCAGAAATTGTGAGTAGAGCCAACCAAATTACCGGGTTGAGGTTTGGCATTCATTTCTCGACTTGGACAACTAAAACATGTGACGATCATCGAATGGATGAGTTTCAAGAGAAAGAAAATGAGACAGGAAAAAAAAGTGGAATGACGAATCTAATGGTATGGTCGGAAGCTCTTTGATGGAGAAGGAAGACACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACTGAAACTCCTTTTGTTATT</pcr_primer_p1>
		<pcr_primer_p2>TCCAACCTAGTTTTCATTATTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGACTGAAACTCCTTTTGTTATTGATTCATTGAGCTCTTTCCTCAAATCAGTGCTTCCGAACTTCTTCATCTTTGACATCGCCATGCCCCGAACATTCGGAAAGCATACATCTCGCTTTTCACAGCAATACATTCCGATTTTCAAATGATCACTTTTCCTGTTGCTTCATTCGAACTGAAATCGTTTGTATTACATAATTATAATTTTGATGAGAGAGTAGAATAAGAAATAATGAAAACTAGGTTGGA</canonical_amplicon>
		<polymorphic_amplicon>TGACTGAAACTCCTTTTGTTATTGATTCATTGAGCTCTTTCCTCAAATCAGTGCTTCCGAACTTCTTCATCTTTGACATCGCCATGCCCCGAACATTCGGAAAGCATACATCTCGCTTTTCACAGCAATACATTCCGATTTTCAAATGATCACTTTTCCTGTTGCTTCATTCGAACTGAAATCRTTTGTATTACATAATTATAATTTTGATGAGAGAGTAGAATAAGAAATAATGAAAACTAGGTTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24329</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>133373</contig_pos>
        <strand>+</strand>
        <context>AAAACAGAGA[A/G]AACCTCAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTGAACTCACCGTGCACACACGGCACTCATAGCGTTCTAAAAACAGAGA</left_flank>
        <right_flank>AACCTCAACAATCGAAATTCGGATAGTGTGAGTGAGAAGAAAGAGCGGCG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCATCTCCTCAACAGCAACAATTCCTCCTGATCCTGCCCAGTACCTGAAACATTTTAATCCCTAAACTGACTGAAACTCCTTTTGTTATTGATTCATTGAGCTCTTTCCTCAAATCAGTGCTTCCGAACTTCTTCATCTTTGACATCGCCATGCCCCGAACATTCGGAAAGCATACATCTCGCTTTTCACAGCAATACATTCCGATTTTCAAATGATCACTTTTCCTGTTGCTTCATTCGAACTGAAATCGTTTGTATTACATAATTATAATTTTGATGAGAGAGTAGAATAAGAAATAATGAAAACTAGGTTGGAACTCCGACAAAATTTAAAAAACCAAACAAAGAAGAGCCACAAAAACTTCGGCTGGTTTTGCGAGTAATAAACCGGGCGACTGAGCCTGGAGGGTCCCGAGGCTCCGCAAGCTCCGCCCATTTCTGCCGCACACTGAACTCACCGTGCACACACGGCACTCATAGCGTTCTAAAAACAGAGAAAACCTCAACAATCGAAATTCGGATAGTGTGAGTGAGAAGAAAGAGCGGCGCTTTATGTTTCAGAAATTGTGAGTAGAGCCAACCAAATTACCGGGTTGAGGTTTGGCATTCATTTCTCGACTTGGACAACTAAAACATGTGACGATCATCGAATGGATGAGTTTCAAGAGAAAGAAAATGAGACAGGAAAAAAAAGTGGAATGACGAATCTAATGGTATGGTCGGAAGCTCTTTGATGGAGAAGGAAGACACTCGAAACAAATTGGCCTCAAATAGAGGTCTAAATTGTTAGAATGCGTAGCGAAGAAGTGATCTTAGATTTTTCTATTTTCCTTCAATAGGATTACGATAACTAAGTAAAACTTAAAAGTTCCTTTTAAAAAGGTTGTAAAATGAATCATAAAAATTGGTTTTGGCAAGCTAGAAGCTATTGCTACAAGATATACGGTAAATACTCAGATAAAATGTGACAGTTGATAATAATATGGAATATTCTACTA</canonical>
            <polymorphic>CTTCATCTCCTCAACAGCAACAATTCCTCCTGATCCTGCCCAGTACCTGAAACATTTTAATCCCTAAACTGACTGAAACTCCTTTTGTTATTGATTCATTGAGCTCTTTCCTCAAATCAGTGCTTCCGAACTTCTTCATCTTTGACATCGCCATGCCCCGAACATTCGGAAAGCATACATCTCGCTTTTCACAGCAATACATTCCGATTTTCAAATGATCACTTTTCCTGTTGCTTCATTCGAACTGAAATCGTTTGTATTACATAATTATAATTTTGATGAGAGAGTAGAATAAGAAATAATGAAAACTAGGTTGGAACTCCGACAAAATTTAAAAAACCAAACAAAGAAGAGCCACAAAAACTTCGGCTGGTTTTGCGAGTAATAAACCGGGCGACTGAGCCTGGAGGGTCCCGAGGCTCCGCAAGCTCCGCCCATTTCTGCCGCACACTGAACTCACCGTGCACACACGGCACTCATAGCGTTCTAAAAACAGAGARAACCTCAACAATCGAAATTCGGATAGTGTGAGTGAGAAGAAAGAGCGGCGCTTTATGTTTCAGAAATTGTGAGTAGAGCCAACCAAATTACCGGGTTGAGGTTTGGCATTCATTTCTCGACTTGGACAACTAAAACATGTGACGATCATCGAATGGATGAGTTTCAAGAGAAAGAAAATGAGACAGGAAAAAAAAGTGGAATGACGAATCTAATGGTATGGTCGGAAGCTCTTTGATGGAGAAGGAAGACACTCGAAACAAATTGGCCTCAAATAGAGGTCTAAATTGTTAGAATGCGTAGCGAAGAAGTGATCTTAGATTTTTCTATTTTCCTTCAATAGGATTACGATAACTAAGTAAAACTTAAAAGTTCCTTTTAAAAAGGTTGTAAAATGAATCATAAAAATTGGTTTTGGCAAGCTAGAAGCTATTGCTACAAGATATACGGTAAATACTCAGATAAAATGTGACAGTTGATAATAATATGGAATATTCTACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACCAAACAAAGAAGAGC</pcr_primer_p1>
		<pcr_primer_p2>GTTGGCTCTACTCACAATTTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAACCAAACAAAGAAGAGCCACAAAAACTTCGGCTGGTTTTGCGAGTAATAAACCGGGCGACTGAGCCTGGAGGGTCCCGAGGCTCCGCAAGCTCCGCCCATTTCTGCCGCACACTGAACTCACCGTGCACACACGGCACTCATAGCGTTCTAAAAACAGAGAAAACCTCAACAATCGAAATTCGGATAGTGTGAGTGAGAAGAAAGAGCGGCGCTTTATGTTTCAGAAATTGTGAGTAGAGCCAAC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACCAAACAAAGAAGAGCCACAAAAACTTCGGCTGGTTTTGCGAGTAATAAACCGGGCGACTGAGCCTGGAGGGTCCCGAGGCTCCGCAAGCTCCGCCCATTTCTGCCGCACACTGAACTCACCGTGCACACACGGCACTCATAGCGTTCTAAAAACAGAGARAACCTCAACAATCGAAATTCGGATAGTGTGAGTGAGAAGAAAGAGCGGCGCTTTATGTTTCAGAAATTGTGAGTAGAGCCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24330</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>133509</contig_pos>
        <strand>+</strand>
        <context>ACAACTAAAA[A/C]ATGTGACGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTACCGGGTTGAGGTTTGGCATTCATTTCTCGACTTGGACAACTAAAA</left_flank>
        <right_flank>ATGTGACGATCATCGAATGGATGAGTTTCAAGAGAAAGAAAATGAGACAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCTTTGACATCGCCATGCCCCGAACATTCGGAAAGCATACATCTCGCTTTTCACAGCAATACATTCCGATTTTCAAATGATCACTTTTCCTGTTGCTTCATTCGAACTGAAATCGTTTGTATTACATAATTATAATTTTGATGAGAGAGTAGAATAAGAAATAATGAAAACTAGGTTGGAACTCCGACAAAATTTAAAAAACCAAACAAAGAAGAGCCACAAAAACTTCGGCTGGTTTTGCGAGTAATAAACCGGGCGACTGAGCCTGGAGGGTCCCGAGGCTCCGCAAGCTCCGCCCATTTCTGCCGCACACTGAACTCACCGTGCACACACGGCACTCATAGCGTTCTAAAAACAGAGAAAACCTCAACAATCGAAATTCGGATAGTGTGAGTGAGAAGAAAGAGCGGCGCTTTATGTTTCAGAAATTGTGAGTAGAGCCAACCAAATTACCGGGTTGAGGTTTGGCATTCATTTCTCGACTTGGACAACTAAAACATGTGACGATCATCGAATGGATGAGTTTCAAGAGAAAGAAAATGAGACAGGAAAAAAAAGTGGAATGACGAATCTAATGGTATGGTCGGAAGCTCTTTGATGGAGAAGGAAGACACTCGAAACAAATTGGCCTCAAATAGAGGTCTAAATTGTTAGAATGCGTAGCGAAGAAGTGATCTTAGATTTTTCTATTTTCCTTCAATAGGATTACGATAACTAAGTAAAACTTAAAAGTTCCTTTTAAAAAGGTTGTAAAATGAATCATAAAAATTGGTTTTGGCAAGCTAGAAGCTATTGCTACAAGATATACGGTAAATACTCAGATAAAATGTGACAGTTGATAATAATATGGAATATTCTACTATGATAATCTTTTTTGACAGTGTAATGCAAATTATGTATACTCACTACATACTGGCATTTTATACACTCCCTCCTCCTGTCAACAAACGAGAGAGGCAGGTGTGGGAGAGTGAAAGACTGGTATCCTCATATTTGGC</canonical>
            <polymorphic>CATCTTTGACATCGCCATGCCCCGAACATTCGGAAAGCATACATCTCGCTTTTCACAGCAATACATTCCGATTTTCAAATGATCACTTTTCCTGTTGCTTCATTCGAACTGAAATCGTTTGTATTACATAATTATAATTTTGATGAGAGAGTAGAATAAGAAATAATGAAAACTAGGTTGGAACTCCGACAAAATTTAAAAAACCAAACAAAGAAGAGCCACAAAAACTTCGGCTGGTTTTGCGAGTAATAAACCGGGCGACTGAGCCTGGAGGGTCCCGAGGCTCCGCAAGCTCCGCCCATTTCTGCCGCACACTGAACTCACCGTGCACACACGGCACTCATAGCGTTCTAAAAACAGAGAAAACCTCAACAATCGAAATTCGGATAGTGTGAGTGAGAAGAAAGAGCGGCGCTTTATGTTTCAGAAATTGTGAGTAGAGCCAACCAAATTACCGGGTTGAGGTTTGGCATTCATTTCTCGACTTGGACAACTAAAAMATGTGACGATCATCGAATGGATGAGTTTCAAGAGAAAGAAAATGAGACAGGAAAAAAAAGTGGAATGACGAATCTAATGGTATGGTCGGAAGCTCTTTGATGGAGAAGGAAGACACTCGAAACAAATTGGCCTCAAATAGAGGTCTAAATTGTTAGAATGCGTAGCGAAGAAGTGATCTTAGATTTTTCTATTTTCCTTCAATAGGATTACGATAACTAAGTAAAACTTAAAAGTTCCTTTTAAAAAGGTTGTAAAATGAATCATAAAAATTGGTTTTGGCAAGCTAGAAGCTATTGCTACAAGATATACGGTAAATACTCAGATAAAATGTGACAGTTGATAATAATATGGAATATTCTACTATGATAATCTTTTTTGACAGTGTAATGCAAATTATGTATACTCACTACATACTGGCATTTTATACACTCCCTCCTCCTGTCAACAAACGAGAGAGGCAGGTGTGGGAGAGTGAAAGACTGGTATCCTCATATTTGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 484 16</canonical_bands>
                <polymorphic_bands>984 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCATAGCGTTCTAAAAACAGA</pcr_primer_p1>
		<pcr_primer_p2>ACCATACCATTAGATTCGTCAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACTCATAGCGTTCTAAAAACAGAGAAAACCTCAACAATCGAAATTCGGATAGTGTGAGTGAGAAGAAAGAGCGGCGCTTTATGTTTCAGAAATTGTGAGTAGAGCCAACCAAATTACCGGGTTGAGGTTTGGCATTCATTTCTCGACTTGGACAACTAAAACATGTGACGATCATCGAATGGATGAGTTTCAAGAGAAAGAAAATGAGACAGGAAAAAAAAGTGGAATGACGAATCTAATGGTATGGT</canonical_amplicon>
		<polymorphic_amplicon>ACTCATAGCGTTCTAAAAACAGAGAAAACCTCAACAATCGAAATTCGGATAGTGTGAGTGAGAAGAAAGAGCGGCGCTTTATGTTTCAGAAATTGTGAGTAGAGCCAACCAAATTACCGGGTTGAGGTTTGGCATTCATTTCTCGACTTGGACAACTAAAAMATGTGACGATCATCGAATGGATGAGTTTCAAGAGAAAGAAAATGAGACAGGAAAAAAAAGTGGAATGACGAATCTAATGGTATGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24331</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>206550</contig_pos>
        <strand>+</strand>
        <context>TTAATTAATT[A/T]ATGCAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCTTTTCCAGCATGCCTTAATAGATTTTTCTCCACGTTTTTAATTAATT</left_flank>
        <right_flank>ATGCAAAAATATGTCCAAAGCTGTCATTGTTTTCCAAATTTCCAGACACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGAAAAGAATGCATTCACTTTTTTACATCGTTCCTTATCTATCGTTATTCTCTCCTATTTTTCTATCTTCTTTCGTTTTTTTCTTTTTTTTTTTCTCCGGGTGATTGATTTTAGTGATAGATTCGATAAACTAAAGTTTCATTAGATCACTATCTACCGTATAAAAATTTCGTTGTTGCATTTTATAAATAAACAACCTGCCTTAACTCTTTTTTTTCAAAAAAAAATCACACGAAATTTTTTGAAGTCATTAACTCCTTATTGGCTTTGTTTACTCCTGTTGTCATTGTCACATGAATTTTCCAATGAGTACAATTCTAGTTGTTGACTGGAAATCAGACAAGCCAACTCTTGTTTTCCAAAGAGGGACTAGCTCCGCCTCTTCTCTATCTAGAAGCTGAAGATCTCGTTTTCAGATTAACATACTTTAAGAAGGCATTCCCTAATTTCTTTTCCAGCATGCCTTAATAGATTTTTCTCCACGTTTTTAATTAATTAATGCAAAAATATGTCCAAAGCTGTCATTGTTTTCCAAATTTCCAGACACACTAAACTACGGTATCACTCATTTTGATTGTATTTTTTTCTGCTAAAAATGAAAAATTCGTGTCGTTTTATGGCGAGTCTTAAAGCAAAATCACAGTCAAAACGAGTGATACCGTAATTTAATATTTCTCGAAGTCTGAAAAACAACGTGAGTTTCAGATAGCGTTCTCCAGAAATTTTTTTTTAATGCGAAAGTGAAATTTTATTTTAAGCAGCATCTTTTCAGGTAATAAGAAGCTGTAAGATGTCTCCAGCAGATTCTATGGAGTGTTTTTCTACATGTAGCTCTTTATATTCAAGTGACTCCGAAGAGGAGGTCGTCATCAAGAGACCACGTATCATCCGAAAGAACGCTGGAGTCAATACGGACGCCCCAATAGCCGCTCCAGCTCCAAAGGTAAGCCAAAAGCTGGATCACAAAGCTACTTTTTGTCTTCTTATCTACAGCCAAT</canonical>
            <polymorphic>TCAGAAAAGAATGCATTCACTTTTTTACATCGTTCCTTATCTATCGTTATTCTCTCCTATTTTTCTATCTTCTTTCGTTTTTTTCTTTTTTTTTTTCTCCGGGTGATTGATTTTAGTGATAGATTCGATAAACTAAAGTTTCATTAGATCACTATCTACCGTATAAAAATTTCGTTGTTGCATTTTATAAATAAACAACCTGCCTTAACTCTTTTTTTTCAAAAAAAAATCACACGAAATTTTTTGAAGTCATTAACTCCTTATTGGCTTTGTTTACTCCTGTTGTCATTGTCACATGAATTTTCCAATGAGTACAATTCTAGTTGTTGACTGGAAATCAGACAAGCCAACTCTTGTTTTCCAAAGAGGGACTAGCTCCGCCTCTTCTCTATCTAGAAGCTGAAGATCTCGTTTTCAGATTAACATACTTTAAGAAGGCATTCCCTAATTTCTTTTCCAGCATGCCTTAATAGATTTTTCTCCACGTTTTTAATTAATTWATGCAAAAATATGTCCAAAGCTGTCATTGTTTTCCAAATTTCCAGACACACTAAACTACGGTATCACTCATTTTGATTGTATTTTTTTCTGCTAAAAATGAAAAATTCGTGTCGTTTTATGGCGAGTCTTAAAGCAAAATCACAGTCAAAACGAGTGATACCGTAATTTAATATTTCTCGAAGTCTGAAAAACAACGTGAGTTTCAGATAGCGTTCTCCAGAAATTTTTTTTTAATGCGAAAGTGAAATTTTATTTTAAGCAGCATCTTTTCAGGTAATAAGAAGCTGTAAGATGTCTCCAGCAGATTCTATGGAGTGTTTTTCTACATGTAGCTCTTTATATTCAAGTGACTCCGAAGAGGAGGTCGTCATCAAGAGACCACGTATCATCCGAAAGAACGCTGGAGTCAATACGGACGCCCCAATAGCCGCTCCAGCTCCAAAGGTAAGCCAAAAGCTGGATCACAAAGCTACTTTTTGTCTTCTTATCTACAGCCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 494 4</canonical_bands>
                <polymorphic_bands>506 494</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>244 205 167 131 64 48 39 37 24 23 10 4 4</canonical_bands>
                <polymorphic_bands>244 205 167 135 64 48 39 37 24 23 10 4</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAATTAA</site>
                <isoschizomers>
                    <enzyme>PacI</enzyme>
                </isoschizomers>
                <canonical_bands>502 494 4</canonical_bands>
                <polymorphic_bands>506 494</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAAGATCTCGTTTTCAGATTA</pcr_primer_p1>
		<pcr_primer_p2>GACTGTGATTTTGCTTTAAGACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTGAAGATCTCGTTTTCAGATTAACATACTTTAAGAAGGCATTCCCTAATTTCTTTTCCAGCATGCCTTAATAGATTTTTCTCCACGTTTTTAATTAATTAATGCAAAAATATGTCCAAAGCTGTCATTGTTTTCCAAATTTCCAGACACACTAAACTACGGTATCACTCATTTTGATTGTATTTTTTTCTGCTAAAAATGAAAAATTCGTGTCGTTTTATGGCGAGTCTTAAAGCAAAATCACAGTC</canonical_amplicon>
		<polymorphic_amplicon>CTGAAGATCTCGTTTTCAGATTAACATACTTTAAGAAGGCATTCCCTAATTTCTTTTCCAGCATGCCTTAATAGATTTTTCTCCACGTTTTTAATTAATTWATGCAAAAATATGTCCAAAGCTGTCATTGTTTTCCAAATTTCCAGACACACTAAACTACGGTATCACTCATTTTGATTGTATTTTTTTCTGCTAAAAATGAAAAATTCGTGTCGTTTTATGGCGAGTCTTAAAGCAAAATCACAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24332</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>206587</contig_pos>
        <strand>+</strand>
        <context>TTGTTTTCCA[A/G]ATTTCCAGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTAATTAATTAATGCAAAAATATGTCCAAAGCTGTCATTGTTTTCCA</left_flank>
        <right_flank>ATTTCCAGACACACTAAACTACGGTATCACTCATTTTGATTGTATTTTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCTATCGTTATTCTCTCCTATTTTTCTATCTTCTTTCGTTTTTTTCTTTTTTTTTTTCTCCGGGTGATTGATTTTAGTGATAGATTCGATAAACTAAAGTTTCATTAGATCACTATCTACCGTATAAAAATTTCGTTGTTGCATTTTATAAATAAACAACCTGCCTTAACTCTTTTTTTTCAAAAAAAAATCACACGAAATTTTTTGAAGTCATTAACTCCTTATTGGCTTTGTTTACTCCTGTTGTCATTGTCACATGAATTTTCCAATGAGTACAATTCTAGTTGTTGACTGGAAATCAGACAAGCCAACTCTTGTTTTCCAAAGAGGGACTAGCTCCGCCTCTTCTCTATCTAGAAGCTGAAGATCTCGTTTTCAGATTAACATACTTTAAGAAGGCATTCCCTAATTTCTTTTCCAGCATGCCTTAATAGATTTTTCTCCACGTTTTTAATTAATTAATGCAAAAATATGTCCAAAGCTGTCATTGTTTTCCAAATTTCCAGACACACTAAACTACGGTATCACTCATTTTGATTGTATTTTTTTCTGCTAAAAATGAAAAATTCGTGTCGTTTTATGGCGAGTCTTAAAGCAAAATCACAGTCAAAACGAGTGATACCGTAATTTAATATTTCTCGAAGTCTGAAAAACAACGTGAGTTTCAGATAGCGTTCTCCAGAAATTTTTTTTTAATGCGAAAGTGAAATTTTATTTTAAGCAGCATCTTTTCAGGTAATAAGAAGCTGTAAGATGTCTCCAGCAGATTCTATGGAGTGTTTTTCTACATGTAGCTCTTTATATTCAAGTGACTCCGAAGAGGAGGTCGTCATCAAGAGACCACGTATCATCCGAAAGAACGCTGGAGTCAATACGGACGCCCCAATAGCCGCTCCAGCTCCAAAGGTAAGCCAAAAGCTGGATCACAAAGCTACTTTTTGTCTTCTTATCTACAGCCAATCGTTTCCGAAGGAGTTATCCGTGTGGTTCCTCTTCGT</canonical>
            <polymorphic>TATCTATCGTTATTCTCTCCTATTTTTCTATCTTCTTTCGTTTTTTTCTTTTTTTTTTTCTCCGGGTGATTGATTTTAGTGATAGATTCGATAAACTAAAGTTTCATTAGATCACTATCTACCGTATAAAAATTTCGTTGTTGCATTTTATAAATAAACAACCTGCCTTAACTCTTTTTTTTCAAAAAAAAATCACACGAAATTTTTTGAAGTCATTAACTCCTTATTGGCTTTGTTTACTCCTGTTGTCATTGTCACATGAATTTTCCAATGAGTACAATTCTAGTTGTTGACTGGAAATCAGACAAGCCAACTCTTGTTTTCCAAAGAGGGACTAGCTCCGCCTCTTCTCTATCTAGAAGCTGAAGATCTCGTTTTCAGATTAACATACTTTAAGAAGGCATTCCCTAATTTCTTTTCCAGCATGCCTTAATAGATTTTTCTCCACGTTTTTAATTAATTAATGCAAAAATATGTCCAAAGCTGTCATTGTTTTCCARATTTCCAGACACACTAAACTACGGTATCACTCATTTTGATTGTATTTTTTTCTGCTAAAAATGAAAAATTCGTGTCGTTTTATGGCGAGTCTTAAAGCAAAATCACAGTCAAAACGAGTGATACCGTAATTTAATATTTCTCGAAGTCTGAAAAACAACGTGAGTTTCAGATAGCGTTCTCCAGAAATTTTTTTTTAATGCGAAAGTGAAATTTTATTTTAAGCAGCATCTTTTCAGGTAATAAGAAGCTGTAAGATGTCTCCAGCAGATTCTATGGAGTGTTTTTCTACATGTAGCTCTTTATATTCAAGTGACTCCGAAGAGGAGGTCGTCATCAAGAGACCACGTATCATCCGAAAGAACGCTGGAGTCAATACGGACGCCCCAATAGCCGCTCCAGCTCCAAAGGTAAGCCAAAAGCTGGATCACAAAGCTACTTTTTGTCTTCTTATCTACAGCCAATCGTTTCCGAAGGAGTTATCCGTGTGGTTCCTCTTCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>291 238 130 119 70 67 61 24</canonical_bands>
                <polymorphic_bands>305 291 130 119 70 61 24</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>291 131 130 70 67 61 61 58 45 41 24 17 4</canonical_bands>
                <polymorphic_bands>291 131 130 108 70 61 61 58 45 24 17 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAAGATCTCGTTTTCAGATTA</pcr_primer_p1>
		<pcr_primer_p2>GACTGTGATTTTGCTTTAAGACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTGAAGATCTCGTTTTCAGATTAACATACTTTAAGAAGGCATTCCCTAATTTCTTTTCCAGCATGCCTTAATAGATTTTTCTCCACGTTTTTAATTAATTAATGCAAAAATATGTCCAAAGCTGTCATTGTTTTCCAAATTTCCAGACACACTAAACTACGGTATCACTCATTTTGATTGTATTTTTTTCTGCTAAAAATGAAAAATTCGTGTCGTTTTATGGCGAGTCTTAAAGCAAAATCACAGTC</canonical_amplicon>
		<polymorphic_amplicon>CTGAAGATCTCGTTTTCAGATTAACATACTTTAAGAAGGCATTCCCTAATTTCTTTTCCAGCATGCCTTAATAGATTTTTCTCCACGTTTTTAATTAATTAATGCAAAAATATGTCCAAAGCTGTCATTGTTTTCCARATTTCCAGACACACTAAACTACGGTATCACTCATTTTGATTGTATTTTTTTCTGCTAAAAATGAAAAATTCGTGTCGTTTTATGGCGAGTCTTAAAGCAAAATCACAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24333</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>249031</contig_pos>
        <strand></strand>
        <context>AATCATTTTG[A/G]AAATGAAGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGGACGGAGTTGAAAAAACTCGAGAATCCGAAATCTTCGAATCATTTTG</left_flank>
        <right_flank>AAATGAAGCAGTGTACAAAACTAACTCTAGCATCAATTGGGTAGAATCTC</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATTAAAATTGGTACTATGCAAAACTCACGTTGGTTTGGCTGGTATTCCTTGGAATCCTTCTGGATCAATTTGAAATTCTCTACTGTAACAATAGAATGTTTTCAATTTTCTAAGTCCTCCATTCATCCATGCTTTCATCAATGCACCAATATCTGATCCCCTCATTTCTTCTCGACTAACTGTAAGATTTTCACATTCCATTTGCAAAAGCGAGCGAAGATTTATGAATTCCGTATCCCAGATTGTCATGTTTCTTGTTCTCAAAGGATACAAACGGCTCATGAATCGCGAATCCAAACCCTTTCGAAGTGGAATCTCAGTAAAAAGAGGCATCTCCGTGAAATGGACTTTGAGATGGTCGACTTCAATTTCATTTTGCATATATTTATACTGCAAAATAAGTCTTCTTGCTCTGAGGTTGTGGTCAGCGTTGGTTTCACACTCTTTAGGACGGAGTTGAAAAAACTCGAGAATCCGAAATCTTCGAATCATTTTGAAAATGAAGCAGTGTACAAAACTAACTCTAGCATCAATTGGGTAGAATCTCAGATCGAAGTTGGCCACGTTGAGTGAAGGAAGCAACATTTCACTCAAATGTTTTAAAAGCTCCATGTTGGATGAATCCAAGTTGTCCTCATCTACGCACATATCCAATTGAGTTGTATCCCGATAAAACCCATACTTTTCAAATTCAATGGATGTCATCGTAATGATTCGTGGAGTTCTTCTTCTTTTGCGTAGATCCCCTTTGATGTGAAGCATAACGGTCTCTTCTCCTCTTTTTAATCTTATATAGCAGTAGTTATAAATTCTCCATTTTAGCGCGTCGACATGTATTTGATGAGCGGAGAACAGAGCTCTGTACTCGGGAAATTGCAGAATCAGTCGGATTCTGAAATTGAAAATACAAAACTTTTAGAAAACCTGAAACTTACAGCAATTCTAGTGGCAGATGGAGAAAAATTTTGGTTATCACATTTTCCGGCCATTCGAACTC</canonical>
            <polymorphic>TTTATTAAAATTGGTACTATGCAAAACTCACGTTGGTTTGGCTGGTATTCCTTGGAATCCTTCTGGATCAATTTGAAATTCTCTACTGTAACAATAGAATGTTTTCAATTTTCTAAGTCCTCCATTCATCCATGCTTTCATCAATGCACCAATATCTGATCCCCTCATTTCTTCTCGACTAACTGTAAGATTTTCACATTCCATTTGCAAAAGCGAGCGAAGATTTATGAATTCCGTATCCCAGATTGTCATGTTTCTTGTTCTCAAAGGATACAAACGGCTCATGAATCGCGAATCCAAACCCTTTCGAAGTGGAATCTCAGTAAAAAGAGGCATCTCCGTGAAATGGACTTTGAGATGGTCGACTTCAATTTCATTTTGCATATATTTATACTGCAAAATAAGTCTTCTTGCTCTGAGGTTGTGGTCAGCGTTGGTTTCACACTCTTTAGGACGGAGTTGAAAAAACTCGAGAATCCGAAATCTTCGAATCATTTTGRAAATGAAGCAGTGTACAAAACTAACTCTAGCATCAATTGGGTAGAATCTCAGATCGAAGTTGGCCACGTTGAGTGAAGGAAGCAACATTTCACTCAAATGTTTTAAAAGCTCCATGTTGGATGAATCCAAGTTGTCCTCATCTACGCACATATCCAATTGAGTTGTATCCCGATAAAACCCATACTTTTCAAATTCAATGGATGTCATCGTAATGATTCGTGGAGTTCTTCTTCTTTTGCGTAGATCCCCTTTGATGTGAAGCATAACGGTCTCTTCTCCTCTTTTTAATCTTATATAGCAGTAGTTATAAATTCTCCATTTTAGCGCGTCGACATGTATTTGATGAGCGGAGAACAGAGCTCTGTACTCGGGAAATTGCAGAATCAGTCGGATTCTGAAATTGAAAATACAAAACTTTTAGAAAACCTGAAACTTACAGCAATTCTAGTGGCAGATGGAGAAAAATTTTGGTTATCACATTTTCCGGCCATTCGAACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCGACTTCAATTTCATTTTG</pcr_primer_p1>
		<pcr_primer_p2>AGCTTTTAAAACATTTGAGTGAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTCGACTTCAATTTCATTTTGCATATATTTATACTGCAAAATAAGTCTTCTTGCTCTGAGGTTGTGGTCAGCGTTGGTTTCACACTCTTTAGGACGGAGTTGAAAAAACTCGAGAATCCGAAATCTTCGAATCATTTTGAAAATGAAGCAGTGTACAAAACTAACTCTAGCATCAATTGGGTAGAATCTCAGATCGAAGTTGGCCACGTTGAGTGAAGGAAGCAACATTTCACTCAAATGTTTTAAAAGCT</canonical_amplicon>
		<polymorphic_amplicon>GTCGACTTCAATTTCATTTTGCATATATTTATACTGCAAAATAAGTCTTCTTGCTCTGAGGTTGTGGTCAGCGTTGGTTTCACACTCTTTAGGACGGAGTTGAAAAAACTCGAGAATCCGAAATCTTCGAATCATTTTGRAAATGAAGCAGTGTACAAAACTAACTCTAGCATCAATTGGGTAGAATCTCAGATCGAAGTTGGCCACGTTGAGTGAAGGAAGCAACATTTCACTCAAATGTTTTAAAAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24334</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>249161</contig_pos>
        <strand></strand>
        <context>GATGAATCCA[A/C]GTTGTCCTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGCAACATTTCACTCAAATGTTTTAAAAGCTCCATGTTGGATGAATCCA</left_flank>
        <right_flank>GTTGTCCTCATCTACGCACATATCCAATTGAGTTGTATCCCGATAAAACC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGCTTTCATCAATGCACCAATATCTGATCCCCTCATTTCTTCTCGACTAACTGTAAGATTTTCACATTCCATTTGCAAAAGCGAGCGAAGATTTATGAATTCCGTATCCCAGATTGTCATGTTTCTTGTTCTCAAAGGATACAAACGGCTCATGAATCGCGAATCCAAACCCTTTCGAAGTGGAATCTCAGTAAAAAGAGGCATCTCCGTGAAATGGACTTTGAGATGGTCGACTTCAATTTCATTTTGCATATATTTATACTGCAAAATAAGTCTTCTTGCTCTGAGGTTGTGGTCAGCGTTGGTTTCACACTCTTTAGGACGGAGTTGAAAAAACTCGAGAATCCGAAATCTTCGAATCATTTTGAAAATGAAGCAGTGTACAAAACTAACTCTAGCATCAATTGGGTAGAATCTCAGATCGAAGTTGGCCACGTTGAGTGAAGGAAGCAACATTTCACTCAAATGTTTTAAAAGCTCCATGTTGGATGAATCCAAGTTGTCCTCATCTACGCACATATCCAATTGAGTTGTATCCCGATAAAACCCATACTTTTCAAATTCAATGGATGTCATCGTAATGATTCGTGGAGTTCTTCTTCTTTTGCGTAGATCCCCTTTGATGTGAAGCATAACGGTCTCTTCTCCTCTTTTTAATCTTATATAGCAGTAGTTATAAATTCTCCATTTTAGCGCGTCGACATGTATTTGATGAGCGGAGAACAGAGCTCTGTACTCGGGAAATTGCAGAATCAGTCGGATTCTGAAATTGAAAATACAAAACTTTTAGAAAACCTGAAACTTACAGCAATTCTAGTGGCAGATGGAGAAAAATTTTGGTTATCACATTTTCCGGCCATTCGAACTCTGGCGGGAAAAGAGGCACAATGTCCATGTTGGCGTTGGTCGAGTGAATAAAGAGCTTGAGGAAAACAGACAGAAACAATTTCAAAAACGAAGCTGAAACCAAATATAACGATTCACAATTATCGAGAAGC</canonical>
            <polymorphic>CATGCTTTCATCAATGCACCAATATCTGATCCCCTCATTTCTTCTCGACTAACTGTAAGATTTTCACATTCCATTTGCAAAAGCGAGCGAAGATTTATGAATTCCGTATCCCAGATTGTCATGTTTCTTGTTCTCAAAGGATACAAACGGCTCATGAATCGCGAATCCAAACCCTTTCGAAGTGGAATCTCAGTAAAAAGAGGCATCTCCGTGAAATGGACTTTGAGATGGTCGACTTCAATTTCATTTTGCATATATTTATACTGCAAAATAAGTCTTCTTGCTCTGAGGTTGTGGTCAGCGTTGGTTTCACACTCTTTAGGACGGAGTTGAAAAAACTCGAGAATCCGAAATCTTCGAATCATTTTGAAAATGAAGCAGTGTACAAAACTAACTCTAGCATCAATTGGGTAGAATCTCAGATCGAAGTTGGCCACGTTGAGTGAAGGAAGCAACATTTCACTCAAATGTTTTAAAAGCTCCATGTTGGATGAATCCAMGTTGTCCTCATCTACGCACATATCCAATTGAGTTGTATCCCGATAAAACCCATACTTTTCAAATTCAATGGATGTCATCGTAATGATTCGTGGAGTTCTTCTTCTTTTGCGTAGATCCCCTTTGATGTGAAGCATAACGGTCTCTTCTCCTCTTTTTAATCTTATATAGCAGTAGTTATAAATTCTCCATTTTAGCGCGTCGACATGTATTTGATGAGCGGAGAACAGAGCTCTGTACTCGGGAAATTGCAGAATCAGTCGGATTCTGAAATTGAAAATACAAAACTTTTAGAAAACCTGAAACTTACAGCAATTCTAGTGGCAGATGGAGAAAAATTTTGGTTATCACATTTTCCGGCCATTCGAACTCTGGCGGGAAAAGAGGCACAATGTCCATGTTGGCGTTGGTCGAGTGAATAAAGAGCTTGAGGAAAACAGACAGAAACAATTTCAAAAACGAAGCTGAAACCAAATATAACGATTCACAATTATCGAGAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGAAGCAGTGTACAAAACTAA</pcr_primer_p1>
		<pcr_primer_p2>ATCTACGCAAAAGAAGAAGAACT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAATGAAGCAGTGTACAAAACTAACTCTAGCATCAATTGGGTAGAATCTCAGATCGAAGTTGGCCACGTTGAGTGAAGGAAGCAACATTTCACTCAAATGTTTTAAAAGCTCCATGTTGGATGAATCCAAGTTGTCCTCATCTACGCACATATCCAATTGAGTTGTATCCCGATAAAACCCATACTTTTCAAATTCAATGGATGTCATCGTAATGATTCGTGGAGTTCTTCTTCTTTTGCGTAGAT</canonical_amplicon>
		<polymorphic_amplicon>AAATGAAGCAGTGTACAAAACTAACTCTAGCATCAATTGGGTAGAATCTCAGATCGAAGTTGGCCACGTTGAGTGAAGGAAGCAACATTTCACTCAAATGTTTTAAAAGCTCCATGTTGGATGAATCCAMGTTGTCCTCATCTACGCACATATCCAATTGAGTTGTATCCCGATAAAACCCATACTTTTCAAATTCAATGGATGTCATCGTAATGATTCGTGGAGTTCTTCTTCTTTTGCGTAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24335</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>249196</contig_pos>
        <strand></strand>
        <context>CAATTGAGTT[G/A]TATCCCGATA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGTTGGATGAATCCAAGTTGTCCTCATCTACGCACATATCCAATTGAGTT</left_flank>
        <right_flank>TATCCCGATAAAACCCATACTTTTCAAATTCAATGGATGTCATCGTAATG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTCTTCTCGACTAACTGTAAGATTTTCACATTCCATTTGCAAAAGCGAGCGAAGATTTATGAATTCCGTATCCCAGATTGTCATGTTTCTTGTTCTCAAAGGATACAAACGGCTCATGAATCGCGAATCCAAACCCTTTCGAAGTGGAATCTCAGTAAAAAGAGGCATCTCCGTGAAATGGACTTTGAGATGGTCGACTTCAATTTCATTTTGCATATATTTATACTGCAAAATAAGTCTTCTTGCTCTGAGGTTGTGGTCAGCGTTGGTTTCACACTCTTTAGGACGGAGTTGAAAAAACTCGAGAATCCGAAATCTTCGAATCATTTTGAAAATGAAGCAGTGTACAAAACTAACTCTAGCATCAATTGGGTAGAATCTCAGATCGAAGTTGGCCACGTTGAGTGAAGGAAGCAACATTTCACTCAAATGTTTTAAAAGCTCCATGTTGGATGAATCCAAGTTGTCCTCATCTACGCACATATCCAATTGAGTTGTATCCCGATAAAACCCATACTTTTCAAATTCAATGGATGTCATCGTAATGATTCGTGGAGTTCTTCTTCTTTTGCGTAGATCCCCTTTGATGTGAAGCATAACGGTCTCTTCTCCTCTTTTTAATCTTATATAGCAGTAGTTATAAATTCTCCATTTTAGCGCGTCGACATGTATTTGATGAGCGGAGAACAGAGCTCTGTACTCGGGAAATTGCAGAATCAGTCGGATTCTGAAATTGAAAATACAAAACTTTTAGAAAACCTGAAACTTACAGCAATTCTAGTGGCAGATGGAGAAAAATTTTGGTTATCACATTTTCCGGCCATTCGAACTCTGGCGGGAAAAGAGGCACAATGTCCATGTTGGCGTTGGTCGAGTGAATAAAGAGCTTGAGGAAAACAGACAGAAACAATTTCAAAAACGAAGCTGAAACCAAATATAACGATTCACAATTATCGAGAAGCAAAATAAAAATTCAAAATTTTTTTCCAGAAATCAG</canonical>
            <polymorphic>CATTTCTTCTCGACTAACTGTAAGATTTTCACATTCCATTTGCAAAAGCGAGCGAAGATTTATGAATTCCGTATCCCAGATTGTCATGTTTCTTGTTCTCAAAGGATACAAACGGCTCATGAATCGCGAATCCAAACCCTTTCGAAGTGGAATCTCAGTAAAAAGAGGCATCTCCGTGAAATGGACTTTGAGATGGTCGACTTCAATTTCATTTTGCATATATTTATACTGCAAAATAAGTCTTCTTGCTCTGAGGTTGTGGTCAGCGTTGGTTTCACACTCTTTAGGACGGAGTTGAAAAAACTCGAGAATCCGAAATCTTCGAATCATTTTGAAAATGAAGCAGTGTACAAAACTAACTCTAGCATCAATTGGGTAGAATCTCAGATCGAAGTTGGCCACGTTGAGTGAAGGAAGCAACATTTCACTCAAATGTTTTAAAAGCTCCATGTTGGATGAATCCAAGTTGTCCTCATCTACGCACATATCCAATTGAGTTRTATCCCGATAAAACCCATACTTTTCAAATTCAATGGATGTCATCGTAATGATTCGTGGAGTTCTTCTTCTTTTGCGTAGATCCCCTTTGATGTGAAGCATAACGGTCTCTTCTCCTCTTTTTAATCTTATATAGCAGTAGTTATAAATTCTCCATTTTAGCGCGTCGACATGTATTTGATGAGCGGAGAACAGAGCTCTGTACTCGGGAAATTGCAGAATCAGTCGGATTCTGAAATTGAAAATACAAAACTTTTAGAAAACCTGAAACTTACAGCAATTCTAGTGGCAGATGGAGAAAAATTTTGGTTATCACATTTTCCGGCCATTCGAACTCTGGCGGGAAAAGAGGCACAATGTCCATGTTGGCGTTGGTCGAGTGAATAAAGAGCTTGAGGAAAACAGACAGAAACAATTTCAAAAACGAAGCTGAAACCAAATATAACGATTCACAATTATCGAGAAGCAAAATAAAAATTCAAAATTTTTTTCCAGAAATCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGAAGCAGTGTACAAAACTAA</pcr_primer_p1>
		<pcr_primer_p2>ATCTACGCAAAAGAAGAAGAACT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAATGAAGCAGTGTACAAAACTAACTCTAGCATCAATTGGGTAGAATCTCAGATCGAAGTTGGCCACGTTGAGTGAAGGAAGCAACATTTCACTCAAATGTTTTAAAAGCTCCATGTTGGATGAATCCAAGTTGTCCTCATCTACGCACATATCCAATTGAGTTGTATCCCGATAAAACCCATACTTTTCAAATTCAATGGATGTCATCGTAATGATTCGTGGAGTTCTTCTTCTTTTGCGTAGAT</canonical_amplicon>
		<polymorphic_amplicon>AAATGAAGCAGTGTACAAAACTAACTCTAGCATCAATTGGGTAGAATCTCAGATCGAAGTTGGCCACGTTGAGTGAAGGAAGCAACATTTCACTCAAATGTTTTAAAAGCTCCATGTTGGATGAATCCAAGTTGTCCTCATCTACGCACATATCCAATTGAGTTRTATCCCGATAAAACCCATACTTTTCAAATTCAATGGATGTCATCGTAATGATTCGTGGAGTTCTTCTTCTTTTGCGTAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24336</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>249243</contig_pos>
        <strand></strand>
        <context>ATGTCATCGT[A/G]ATGATTCGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTGTATCCCGATAAAACCCATACTTTTCAAATTCAATGGATGTCATCGT</left_flank>
        <right_flank>ATGATTCGTGGAGTTCTTCTTCTTTTGCGTAGATCCCCTTTGATGTGAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGAGCGAAGATTTATGAATTCCGTATCCCAGATTGTCATGTTTCTTGTTCTCAAAGGATACAAACGGCTCATGAATCGCGAATCCAAACCCTTTCGAAGTGGAATCTCAGTAAAAAGAGGCATCTCCGTGAAATGGACTTTGAGATGGTCGACTTCAATTTCATTTTGCATATATTTATACTGCAAAATAAGTCTTCTTGCTCTGAGGTTGTGGTCAGCGTTGGTTTCACACTCTTTAGGACGGAGTTGAAAAAACTCGAGAATCCGAAATCTTCGAATCATTTTGAAAATGAAGCAGTGTACAAAACTAACTCTAGCATCAATTGGGTAGAATCTCAGATCGAAGTTGGCCACGTTGAGTGAAGGAAGCAACATTTCACTCAAATGTTTTAAAAGCTCCATGTTGGATGAATCCAAGTTGTCCTCATCTACGCACATATCCAATTGAGTTGTATCCCGATAAAACCCATACTTTTCAAATTCAATGGATGTCATCGTAATGATTCGTGGAGTTCTTCTTCTTTTGCGTAGATCCCCTTTGATGTGAAGCATAACGGTCTCTTCTCCTCTTTTTAATCTTATATAGCAGTAGTTATAAATTCTCCATTTTAGCGCGTCGACATGTATTTGATGAGCGGAGAACAGAGCTCTGTACTCGGGAAATTGCAGAATCAGTCGGATTCTGAAATTGAAAATACAAAACTTTTAGAAAACCTGAAACTTACAGCAATTCTAGTGGCAGATGGAGAAAAATTTTGGTTATCACATTTTCCGGCCATTCGAACTCTGGCGGGAAAAGAGGCACAATGTCCATGTTGGCGTTGGTCGAGTGAATAAAGAGCTTGAGGAAAACAGACAGAAACAATTTCAAAAACGAAGCTGAAACCAAATATAACGATTCACAATTATCGAGAAGCAAAATAAAAATTCAAAATTTTTTTCCAGAAATCAGACAAAAAAAATTATTTAATAATTATTTAGTTTAAACATTTATAATAT</canonical>
            <polymorphic>GCGAGCGAAGATTTATGAATTCCGTATCCCAGATTGTCATGTTTCTTGTTCTCAAAGGATACAAACGGCTCATGAATCGCGAATCCAAACCCTTTCGAAGTGGAATCTCAGTAAAAAGAGGCATCTCCGTGAAATGGACTTTGAGATGGTCGACTTCAATTTCATTTTGCATATATTTATACTGCAAAATAAGTCTTCTTGCTCTGAGGTTGTGGTCAGCGTTGGTTTCACACTCTTTAGGACGGAGTTGAAAAAACTCGAGAATCCGAAATCTTCGAATCATTTTGAAAATGAAGCAGTGTACAAAACTAACTCTAGCATCAATTGGGTAGAATCTCAGATCGAAGTTGGCCACGTTGAGTGAAGGAAGCAACATTTCACTCAAATGTTTTAAAAGCTCCATGTTGGATGAATCCAAGTTGTCCTCATCTACGCACATATCCAATTGAGTTGTATCCCGATAAAACCCATACTTTTCAAATTCAATGGATGTCATCGTRATGATTCGTGGAGTTCTTCTTCTTTTGCGTAGATCCCCTTTGATGTGAAGCATAACGGTCTCTTCTCCTCTTTTTAATCTTATATAGCAGTAGTTATAAATTCTCCATTTTAGCGCGTCGACATGTATTTGATGAGCGGAGAACAGAGCTCTGTACTCGGGAAATTGCAGAATCAGTCGGATTCTGAAATTGAAAATACAAAACTTTTAGAAAACCTGAAACTTACAGCAATTCTAGTGGCAGATGGAGAAAAATTTTGGTTATCACATTTTCCGGCCATTCGAACTCTGGCGGGAAAAGAGGCACAATGTCCATGTTGGCGTTGGTCGAGTGAATAAAGAGCTTGAGGAAAACAGACAGAAACAATTTCAAAAACGAAGCTGAAACCAAATATAACGATTCACAATTATCGAGAAGCAAAATAAAAATTCAAAATTTTTTTCCAGAAATCAGACAAAAAAAATTATTTAATAATTATTTAGTTTAAACATTTATAATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAGCATCAATTGGGTAGAAT</pcr_primer_p1>
		<pcr_primer_p2>GAGACCGTTATGCTTCACAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTAGCATCAATTGGGTAGAATCTCAGATCGAAGTTGGCCACGTTGAGTGAAGGAAGCAACATTTCACTCAAATGTTTTAAAAGCTCCATGTTGGATGAATCCAAGTTGTCCTCATCTACGCACATATCCAATTGAGTTGTATCCCGATAAAACCCATACTTTTCAAATTCAATGGATGTCATCGTAATGATTCGTGGAGTTCTTCTTCTTTTGCGTAGATCCCCTTTGATGTGAAGCATAACGGTCTC</canonical_amplicon>
		<polymorphic_amplicon>TCTAGCATCAATTGGGTAGAATCTCAGATCGAAGTTGGCCACGTTGAGTGAAGGAAGCAACATTTCACTCAAATGTTTTAAAAGCTCCATGTTGGATGAATCCAAGTTGTCCTCATCTACGCACATATCCAATTGAGTTGTATCCCGATAAAACCCATACTTTTCAAATTCAATGGATGTCATCGTRATGATTCGTGGAGTTCTTCTTCTTTTGCGTAGATCCCCTTTGATGTGAAGCATAACGGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24337</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>249375</contig_pos>
        <strand></strand>
        <context>CATGTATTTG[A/G]TGAGCGGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATAGCAGTAGTTATAAATTCTCCATTTTAGCGCGTCGACATGTATTTG</left_flank>
        <right_flank>TGAGCGGAGAACAGAGCTCTGTACTCGGGAAATTGCAGAATCAGTCGGAT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGGACTTTGAGATGGTCGACTTCAATTTCATTTTGCATATATTTATACTGCAAAATAAGTCTTCTTGCTCTGAGGTTGTGGTCAGCGTTGGTTTCACACTCTTTAGGACGGAGTTGAAAAAACTCGAGAATCCGAAATCTTCGAATCATTTTGAAAATGAAGCAGTGTACAAAACTAACTCTAGCATCAATTGGGTAGAATCTCAGATCGAAGTTGGCCACGTTGAGTGAAGGAAGCAACATTTCACTCAAATGTTTTAAAAGCTCCATGTTGGATGAATCCAAGTTGTCCTCATCTACGCACATATCCAATTGAGTTGTATCCCGATAAAACCCATACTTTTCAAATTCAATGGATGTCATCGTAATGATTCGTGGAGTTCTTCTTCTTTTGCGTAGATCCCCTTTGATGTGAAGCATAACGGTCTCTTCTCCTCTTTTTAATCTTATATAGCAGTAGTTATAAATTCTCCATTTTAGCGCGTCGACATGTATTTGATGAGCGGAGAACAGAGCTCTGTACTCGGGAAATTGCAGAATCAGTCGGATTCTGAAATTGAAAATACAAAACTTTTAGAAAACCTGAAACTTACAGCAATTCTAGTGGCAGATGGAGAAAAATTTTGGTTATCACATTTTCCGGCCATTCGAACTCTGGCGGGAAAAGAGGCACAATGTCCATGTTGGCGTTGGTCGAGTGAATAAAGAGCTTGAGGAAAACAGACAGAAACAATTTCAAAAACGAAGCTGAAACCAAATATAACGATTCACAATTATCGAGAAGCAAAATAAAAATTCAAAATTTTTTTCCAGAAATCAGACAAAAAAAATTATTTAATAATTATTTAGTTTAAACATTTATAATATCCAGTTAACTCTAAAACTTTGCGAGTAGACAAAAAACAATTAGACAAAAGAATAGAAAGAAGTGTACTGCCCTGCGTCAGCTGTGGAATCGATTTGACACAAGCGTGCTTTTAGTGCAAATGAGAAGGAAAA</canonical>
            <polymorphic>AATGGACTTTGAGATGGTCGACTTCAATTTCATTTTGCATATATTTATACTGCAAAATAAGTCTTCTTGCTCTGAGGTTGTGGTCAGCGTTGGTTTCACACTCTTTAGGACGGAGTTGAAAAAACTCGAGAATCCGAAATCTTCGAATCATTTTGAAAATGAAGCAGTGTACAAAACTAACTCTAGCATCAATTGGGTAGAATCTCAGATCGAAGTTGGCCACGTTGAGTGAAGGAAGCAACATTTCACTCAAATGTTTTAAAAGCTCCATGTTGGATGAATCCAAGTTGTCCTCATCTACGCACATATCCAATTGAGTTGTATCCCGATAAAACCCATACTTTTCAAATTCAATGGATGTCATCGTAATGATTCGTGGAGTTCTTCTTCTTTTGCGTAGATCCCCTTTGATGTGAAGCATAACGGTCTCTTCTCCTCTTTTTAATCTTATATAGCAGTAGTTATAAATTCTCCATTTTAGCGCGTCGACATGTATTTGRTGAGCGGAGAACAGAGCTCTGTACTCGGGAAATTGCAGAATCAGTCGGATTCTGAAATTGAAAATACAAAACTTTTAGAAAACCTGAAACTTACAGCAATTCTAGTGGCAGATGGAGAAAAATTTTGGTTATCACATTTTCCGGCCATTCGAACTCTGGCGGGAAAAGAGGCACAATGTCCATGTTGGCGTTGGTCGAGTGAATAAAGAGCTTGAGGAAAACAGACAGAAACAATTTCAAAAACGAAGCTGAAACCAAATATAACGATTCACAATTATCGAGAAGCAAAATAAAAATTCAAAATTTTTTTCCAGAAATCAGACAAAAAAAATTATTTAATAATTATTTAGTTTAAACATTTATAATATCCAGTTAACTCTAAAACTTTGCGAGTAGACAAAAAACAATTAGACAAAAGAATAGAAAGAAGTGTACTGCCCTGCGTCAGCTGTGGAATCGATTTGACACAAGCGTGCTTTTAGTGCAAATGAGAAGGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTCTTCTTCTTTTGCGTAGA</pcr_primer_p1>
		<pcr_primer_p2>ATAACCAAAATTTTTCTCCATCT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AGTTCTTCTTCTTTTGCGTAGATCCCCTTTGATGTGAAGCATAACGGTCTCTTCTCCTCTTTTTAATCTTATATAGCAGTAGTTATAAATTCTCCATTTTAGCGCGTCGACATGTATTTGATGAGCGGAGAACAGAGCTCTGTACTCGGGAAATTGCAGAATCAGTCGGATTCTGAAATTGAAAATACAAAACTTTTAGAAAACCTGAAACTTACAGCAATTCTAGTGGCAGATGGAGAAAAATTTTGGTTAT</canonical_amplicon>
		<polymorphic_amplicon>AGTTCTTCTTCTTTTGCGTAGATCCCCTTTGATGTGAAGCATAACGGTCTCTTCTCCTCTTTTTAATCTTATATAGCAGTAGTTATAAATTCTCCATTTTAGCGCGTCGACATGTATTTGRTGAGCGGAGAACAGAGCTCTGTACTCGGGAAATTGCAGAATCAGTCGGATTCTGAAATTGAAAATACAAAACTTTTAGAAAACCTGAAACTTACAGCAATTCTAGTGGCAGATGGAGAAAAATTTTGGTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24338</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>249430</contig_pos>
        <strand></strand>
        <context>TCGGATTCTG[A/G]AATTGAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGAGAACAGAGCTCTGTACTCGGGAAATTGCAGAATCAGTCGGATTCTG</left_flank>
        <right_flank>AATTGAAAATACAAAACTTTTAGAAAACCTGAAACTTACAGCAATTCTAG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAAGTCTTCTTGCTCTGAGGTTGTGGTCAGCGTTGGTTTCACACTCTTTAGGACGGAGTTGAAAAAACTCGAGAATCCGAAATCTTCGAATCATTTTGAAAATGAAGCAGTGTACAAAACTAACTCTAGCATCAATTGGGTAGAATCTCAGATCGAAGTTGGCCACGTTGAGTGAAGGAAGCAACATTTCACTCAAATGTTTTAAAAGCTCCATGTTGGATGAATCCAAGTTGTCCTCATCTACGCACATATCCAATTGAGTTGTATCCCGATAAAACCCATACTTTTCAAATTCAATGGATGTCATCGTAATGATTCGTGGAGTTCTTCTTCTTTTGCGTAGATCCCCTTTGATGTGAAGCATAACGGTCTCTTCTCCTCTTTTTAATCTTATATAGCAGTAGTTATAAATTCTCCATTTTAGCGCGTCGACATGTATTTGATGAGCGGAGAACAGAGCTCTGTACTCGGGAAATTGCAGAATCAGTCGGATTCTGAAATTGAAAATACAAAACTTTTAGAAAACCTGAAACTTACAGCAATTCTAGTGGCAGATGGAGAAAAATTTTGGTTATCACATTTTCCGGCCATTCGAACTCTGGCGGGAAAAGAGGCACAATGTCCATGTTGGCGTTGGTCGAGTGAATAAAGAGCTTGAGGAAAACAGACAGAAACAATTTCAAAAACGAAGCTGAAACCAAATATAACGATTCACAATTATCGAGAAGCAAAATAAAAATTCAAAATTTTTTTCCAGAAATCAGACAAAAAAAATTATTTAATAATTATTTAGTTTAAACATTTATAATATCCAGTTAACTCTAAAACTTTGCGAGTAGACAAAAAACAATTAGACAAAAGAATAGAAAGAAGTGTACTGCCCTGCGTCAGCTGTGGAATCGATTTGACACAAGCGTGCTTTTAGTGCAAATGAGAAGGAAAAGGCAAAGTCGCTCCATTGAACATCTATTTTTAGAGGGAATTTGAACTCAATTCTT</canonical>
            <polymorphic>AATAAGTCTTCTTGCTCTGAGGTTGTGGTCAGCGTTGGTTTCACACTCTTTAGGACGGAGTTGAAAAAACTCGAGAATCCGAAATCTTCGAATCATTTTGAAAATGAAGCAGTGTACAAAACTAACTCTAGCATCAATTGGGTAGAATCTCAGATCGAAGTTGGCCACGTTGAGTGAAGGAAGCAACATTTCACTCAAATGTTTTAAAAGCTCCATGTTGGATGAATCCAAGTTGTCCTCATCTACGCACATATCCAATTGAGTTGTATCCCGATAAAACCCATACTTTTCAAATTCAATGGATGTCATCGTAATGATTCGTGGAGTTCTTCTTCTTTTGCGTAGATCCCCTTTGATGTGAAGCATAACGGTCTCTTCTCCTCTTTTTAATCTTATATAGCAGTAGTTATAAATTCTCCATTTTAGCGCGTCGACATGTATTTGATGAGCGGAGAACAGAGCTCTGTACTCGGGAAATTGCAGAATCAGTCGGATTCTGRAATTGAAAATACAAAACTTTTAGAAAACCTGAAACTTACAGCAATTCTAGTGGCAGATGGAGAAAAATTTTGGTTATCACATTTTCCGGCCATTCGAACTCTGGCGGGAAAAGAGGCACAATGTCCATGTTGGCGTTGGTCGAGTGAATAAAGAGCTTGAGGAAAACAGACAGAAACAATTTCAAAAACGAAGCTGAAACCAAATATAACGATTCACAATTATCGAGAAGCAAAATAAAAATTCAAAATTTTTTTCCAGAAATCAGACAAAAAAAATTATTTAATAATTATTTAGTTTAAACATTTATAATATCCAGTTAACTCTAAAACTTTGCGAGTAGACAAAAAACAATTAGACAAAAGAATAGAAAGAAGTGTACTGCCCTGCGTCAGCTGTGGAATCGATTTGACACAAGCGTGCTTTTAGTGCAAATGAGAAGGAAAAGGCAAAGTCGCTCCATTGAACATCTATTTTTAGAGGGAATTTGAACTCAATTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>340 267 235 72 62 18 6</canonical_bands>
                <polymorphic_bands>340 273 235 72 62 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTCTTCTTCTTTTGCGTAGA</pcr_primer_p1>
		<pcr_primer_p2>ATAACCAAAATTTTTCTCCATCT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AGTTCTTCTTCTTTTGCGTAGATCCCCTTTGATGTGAAGCATAACGGTCTCTTCTCCTCTTTTTAATCTTATATAGCAGTAGTTATAAATTCTCCATTTTAGCGCGTCGACATGTATTTGATGAGCGGAGAACAGAGCTCTGTACTCGGGAAATTGCAGAATCAGTCGGATTCTGAAATTGAAAATACAAAACTTTTAGAAAACCTGAAACTTACAGCAATTCTAGTGGCAGATGGAGAAAAATTTTGGTTAT</canonical_amplicon>
		<polymorphic_amplicon>AGTTCTTCTTCTTTTGCGTAGATCCCCTTTGATGTGAAGCATAACGGTCTCTTCTCCTCTTTTTAATCTTATATAGCAGTAGTTATAAATTCTCCATTTTAGCGCGTCGACATGTATTTGATGAGCGGAGAACAGAGCTCTGTACTCGGGAAATTGCAGAATCAGTCGGATTCTGRAATTGAAAATACAAAACTTTTAGAAAACCTGAAACTTACAGCAATTCTAGTGGCAGATGGAGAAAAATTTTGGTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24339</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>249441</contig_pos>
        <strand></strand>
        <context>AATTGAAAAT[A/G]CAAAACTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTCTGTACTCGGGAAATTGCAGAATCAGTCGGATTCTGAAATTGAAAAT</left_flank>
        <right_flank>CAAAACTTTTAGAAAACCTGAAACTTACAGCAATTCTAGTGGCAGATGGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCTCTGAGGTTGTGGTCAGCGTTGGTTTCACACTCTTTAGGACGGAGTTGAAAAAACTCGAGAATCCGAAATCTTCGAATCATTTTGAAAATGAAGCAGTGTACAAAACTAACTCTAGCATCAATTGGGTAGAATCTCAGATCGAAGTTGGCCACGTTGAGTGAAGGAAGCAACATTTCACTCAAATGTTTTAAAAGCTCCATGTTGGATGAATCCAAGTTGTCCTCATCTACGCACATATCCAATTGAGTTGTATCCCGATAAAACCCATACTTTTCAAATTCAATGGATGTCATCGTAATGATTCGTGGAGTTCTTCTTCTTTTGCGTAGATCCCCTTTGATGTGAAGCATAACGGTCTCTTCTCCTCTTTTTAATCTTATATAGCAGTAGTTATAAATTCTCCATTTTAGCGCGTCGACATGTATTTGATGAGCGGAGAACAGAGCTCTGTACTCGGGAAATTGCAGAATCAGTCGGATTCTGAAATTGAAAATACAAAACTTTTAGAAAACCTGAAACTTACAGCAATTCTAGTGGCAGATGGAGAAAAATTTTGGTTATCACATTTTCCGGCCATTCGAACTCTGGCGGGAAAAGAGGCACAATGTCCATGTTGGCGTTGGTCGAGTGAATAAAGAGCTTGAGGAAAACAGACAGAAACAATTTCAAAAACGAAGCTGAAACCAAATATAACGATTCACAATTATCGAGAAGCAAAATAAAAATTCAAAATTTTTTTCCAGAAATCAGACAAAAAAAATTATTTAATAATTATTTAGTTTAAACATTTATAATATCCAGTTAACTCTAAAACTTTGCGAGTAGACAAAAAACAATTAGACAAAAGAATAGAAAGAAGTGTACTGCCCTGCGTCAGCTGTGGAATCGATTTGACACAAGCGTGCTTTTAGTGCAAATGAGAAGGAAAAGGCAAAGTCGCTCCATTGAACATCTATTTTTAGAGGGAATTTGAACTCAATTCTTCCTGCTTTCTG</canonical>
            <polymorphic>TTGCTCTGAGGTTGTGGTCAGCGTTGGTTTCACACTCTTTAGGACGGAGTTGAAAAAACTCGAGAATCCGAAATCTTCGAATCATTTTGAAAATGAAGCAGTGTACAAAACTAACTCTAGCATCAATTGGGTAGAATCTCAGATCGAAGTTGGCCACGTTGAGTGAAGGAAGCAACATTTCACTCAAATGTTTTAAAAGCTCCATGTTGGATGAATCCAAGTTGTCCTCATCTACGCACATATCCAATTGAGTTGTATCCCGATAAAACCCATACTTTTCAAATTCAATGGATGTCATCGTAATGATTCGTGGAGTTCTTCTTCTTTTGCGTAGATCCCCTTTGATGTGAAGCATAACGGTCTCTTCTCCTCTTTTTAATCTTATATAGCAGTAGTTATAAATTCTCCATTTTAGCGCGTCGACATGTATTTGATGAGCGGAGAACAGAGCTCTGTACTCGGGAAATTGCAGAATCAGTCGGATTCTGAAATTGAAAATRCAAAACTTTTAGAAAACCTGAAACTTACAGCAATTCTAGTGGCAGATGGAGAAAAATTTTGGTTATCACATTTTCCGGCCATTCGAACTCTGGCGGGAAAAGAGGCACAATGTCCATGTTGGCGTTGGTCGAGTGAATAAAGAGCTTGAGGAAAACAGACAGAAACAATTTCAAAAACGAAGCTGAAACCAAATATAACGATTCACAATTATCGAGAAGCAAAATAAAAATTCAAAATTTTTTTCCAGAAATCAGACAAAAAAAATTATTTAATAATTATTTAGTTTAAACATTTATAATATCCAGTTAACTCTAAAACTTTGCGAGTAGACAAAAAACAATTAGACAAAAGAATAGAAAGAAGTGTACTGCCCTGCGTCAGCTGTGGAATCGATTTGACACAAGCGTGCTTTTAGTGCAAATGAGAAGGAAAAGGCAAAGTCGCTCCATTGAACATCTATTTTTAGAGGGAATTTGAACTCAATTCTTCCTGCTTTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTCTTCTTCTTTTGCGTAGA</pcr_primer_p1>
		<pcr_primer_p2>ATAACCAAAATTTTTCTCCATCT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AGTTCTTCTTCTTTTGCGTAGATCCCCTTTGATGTGAAGCATAACGGTCTCTTCTCCTCTTTTTAATCTTATATAGCAGTAGTTATAAATTCTCCATTTTAGCGCGTCGACATGTATTTGATGAGCGGAGAACAGAGCTCTGTACTCGGGAAATTGCAGAATCAGTCGGATTCTGAAATTGAAAATACAAAACTTTTAGAAAACCTGAAACTTACAGCAATTCTAGTGGCAGATGGAGAAAAATTTTGGTTAT</canonical_amplicon>
		<polymorphic_amplicon>AGTTCTTCTTCTTTTGCGTAGATCCCCTTTGATGTGAAGCATAACGGTCTCTTCTCCTCTTTTTAATCTTATATAGCAGTAGTTATAAATTCTCCATTTTAGCGCGTCGACATGTATTTGATGAGCGGAGAACAGAGCTCTGTACTCGGGAAATTGCAGAATCAGTCGGATTCTGAAATTGAAAATRCAAAACTTTTAGAAAACCTGAAACTTACAGCAATTCTAGTGGCAGATGGAGAAAAATTTTGGTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24340</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>262658</contig_pos>
        <strand>+</strand>
        <context>TGTAAAGAAC[A/C]CACTATACGC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACAGAAAAACGGCGACGGCCAGCGGCCAGCGGCGCCTTATTGTAAAGAAC</left_flank>
        <right_flank>CACTATACGCATCTCGTGCGGTTCCATGGTGTAGCGGTTAGCACTCAGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGACGAACACCTGCCTCTCACAAAGCAATAATCATGTCAGCATTTCGCGAACTGTCCCAATGAGTGAAGCCTAGTGTCAATAAGAAAAAGCTTCCACATTGACACTTGCAACCGTTTACGGAGCGGCCATATATGAATGCCTTATGATAGGCAGGTGTTCGTCAGGTTCCATGGTGTAGCGGTTAGCACTCAGGACTTTGAATCCTGCGACCCGAGTTCAAATCTCGGTGGAACCTATCGTTTTGTGACTTCTATTACTTTTTAGTTTACAATTTTTTCTAAACTTACTTTTGAGTATTACAAAACATAATATCATACATCATTGTCAATAAATATCAAATCGTTTTTTTCAAAGTGTAAAATCTTCTTTTTTTGAAAAAAAAGAACAAGAGCCATTTGTTGTGTGCCACCATCTCTTCAACCACACACATATTATCTTTTCGAACAACAGAAAAACGGCGACGGCCAGCGGCCAGCGGCGCCTTATTGTAAAGAACCCACTATACGCATCTCGTGCGGTTCCATGGTGTAGCGGTTAGCACTCAGGACTCTGAATCCTGCGACCCGAGTTCAAATCTCGGTGGGACCTATCGTTTTTGTTTAATTTTTTTTGAGTTAGAGGGCACGCGCACATTACGGAGAACGACGAAAAAAATCCCAAAAATGAAAACTTCGAATTTTCGGATGCAAAAACTCGCAATTTGAGCTCAACTATCTCAATTCGTTTGTGAAAGTTTCAATGATAAAACTGTTATATCACAAAATCAAACTAATTTTCAGGATTGACTTTTTGCCATTATAACAAAAAACTCAAATCGAAGCAAATCAAAAACGATAGGTTCCACCGAGATTTGAACTCGGGTCGCAGGATTCAGAGTCCTGAGTGCTAACCGCTACACCATGGAACCGCACGAGATGCGTATAGTGTGCTCTTTACAATAAGGCGCCGCTGGCCGCTGGCCGTCGCCGTTTTTCTGTTGTTCGAAAAGATAATATGT</canonical>
            <polymorphic>CCTGACGAACACCTGCCTCTCACAAAGCAATAATCATGTCAGCATTTCGCGAACTGTCCCAATGAGTGAAGCCTAGTGTCAATAAGAAAAAGCTTCCACATTGACACTTGCAACCGTTTACGGAGCGGCCATATATGAATGCCTTATGATAGGCAGGTGTTCGTCAGGTTCCATGGTGTAGCGGTTAGCACTCAGGACTTTGAATCCTGCGACCCGAGTTCAAATCTCGGTGGAACCTATCGTTTTGTGACTTCTATTACTTTTTAGTTTACAATTTTTTCTAAACTTACTTTTGAGTATTACAAAACATAATATCATACATCATTGTCAATAAATATCAAATCGTTTTTTTCAAAGTGTAAAATCTTCTTTTTTTGAAAAAAAAGAACAAGAGCCATTTGTTGTGTGCCACCATCTCTTCAACCACACACATATTATCTTTTCGAACAACAGAAAAACGGCGACGGCCAGCGGCCAGCGGCGCCTTATTGTAAAGAACMCACTATACGCATCTCGTGCGGTTCCATGGTGTAGCGGTTAGCACTCAGGACTCTGAATCCTGCGACCCGAGTTCAAATCTCGGTGGGACCTATCGTTTTTGTTTAATTTTTTTTGAGTTAGAGGGCACGCGCACATTACGGAGAACGACGAAAAAAATCCCAAAAATGAAAACTTCGAATTTTCGGATGCAAAAACTCGCAATTTGAGCTCAACTATCTCAATTCGTTTGTGAAAGTTTCAATGATAAAACTGTTATATCACAAAATCAAACTAATTTTCAGGATTGACTTTTTGCCATTATAACAAAAAACTCAAATCGAAGCAAATCAAAAACGATAGGTTCCACCGAGATTTGAACTCGGGTCGCAGGATTCAGAGTCCTGAGTGCTAACCGCTACACCATGGAACCGCACGAGATGCGTATAGTGTGCTCTTTACAATAAGGCGCCGCTGGCCGCTGGCCGTCGCCGTTTTTCTGTTGTTCGAAAAGATAATATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACCACACACATATTATCTTTTC</pcr_primer_p1>
		<pcr_primer_p2>AGTTTTCATTTTTGGGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CAACCACACACATATTATCTTTTCGAACAACAGAAAAACGGCGACGGCCAGCGGCCAGCGGCGCCTTATTGTAAAGAACCCACTATACGCATCTCGTGCGGTTCCATGGTGTAGCGGTTAGCACTCAGGACTCTGAATCCTGCGACCCGAGTTCAAATCTCGGTGGGACCTATCGTTTTTGTTTAATTTTTTTTGAGTTAGAGGGCACGCGCACATTACGGAGAACGACGAAAAAAATCCCAAAAATGAAAACT</canonical_amplicon>
		<polymorphic_amplicon>CAACCACACACATATTATCTTTTCGAACAACAGAAAAACGGCGACGGCCAGCGGCCAGCGGCGCCTTATTGTAAAGAACMCACTATACGCATCTCGTGCGGTTCCATGGTGTAGCGGTTAGCACTCAGGACTCTGAATCCTGCGACCCGAGTTCAAATCTCGGTGGGACCTATCGTTTTTGTTTAATTTTTTTTGAGTTAGAGGGCACGCGCACATTACGGAGAACGACGAAAAAAATCCCAAAAATGAAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24341</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>263090</contig_pos>
        <strand>-</strand>
        <context>GTATAGTGTG[A/G]TCTTTACAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGAGTGCTAACCGCTACACCATGGAACCGCACGAGATGCGTATAGTGTG</left_flank>
        <right_flank>TCTTTACAATAAGGCGCCGCTGGCCGCTGGCCGTCGCCGTTTTTCTGTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTATCTTTTCGAACAACAGAAAAACGGCGACGGCCAGCGGCCAGCGGCGCCTTATTGTAAAGAACCCACTATACGCATCTCGTGCGGTTCCATGGTGTAGCGGTTAGCACTCAGGACTCTGAATCCTGCGACCCGAGTTCAAATCTCGGTGGGACCTATCGTTTTTGTTTAATTTTTTTTGAGTTAGAGGGCACGCGCACATTACGGAGAACGACGAAAAAAATCCCAAAAATGAAAACTTCGAATTTTCGGATGCAAAAACTCGCAATTTGAGCTCAACTATCTCAATTCGTTTGTGAAAGTTTCAATGATAAAACTGTTATATCACAAAATCAAACTAATTTTCAGGATTGACTTTTTGCCATTATAACAAAAAACTCAAATCGAAGCAAATCAAAAACGATAGGTTCCACCGAGATTTGAACTCGGGTCGCAGGATTCAGAGTCCTGAGTGCTAACCGCTACACCATGGAACCGCACGAGATGCGTATAGTGTGCTCTTTACAATAAGGCGCCGCTGGCCGCTGGCCGTCGCCGTTTTTCTGTTGTTCGAAAAGATAATATGTGTGTGGTTGAACAGATGGTGGCACACAACAAATGGCTCTTGTTCTTTTTTTTCACAAAAAGAACATTTTACACTTTGAAAAAAACGATTTGATATTTATTGACAATGATGTATGATATTATGTTTTGTAATACTCAAAAGTAAGTTTAGAAAAAATTGTAAACTAAAAAGTAATACCAAGTCACAATACGATAGGTTCCACGAAATTGTCATTTTTAAGAAGTTTGAACGTTACAAAAAATCATAATTCTCTGAAAAGCGTGACGTATGATTCATTTTTCTTATTTCCCAAGTATTGTATTTGAGAATTTTTTTTGTCTTTTCCATAGCTCTCCCCCTATGTTCGACATGATTCACATGCATAAAACAATATATTTTCGTGCTTTTTTTTCAGATACAAGGGGAACCAACCATGTCAGAAAGGAAACCTACG</canonical>
            <polymorphic>TATTATCTTTTCGAACAACAGAAAAACGGCGACGGCCAGCGGCCAGCGGCGCCTTATTGTAAAGAACCCACTATACGCATCTCGTGCGGTTCCATGGTGTAGCGGTTAGCACTCAGGACTCTGAATCCTGCGACCCGAGTTCAAATCTCGGTGGGACCTATCGTTTTTGTTTAATTTTTTTTGAGTTAGAGGGCACGCGCACATTACGGAGAACGACGAAAAAAATCCCAAAAATGAAAACTTCGAATTTTCGGATGCAAAAACTCGCAATTTGAGCTCAACTATCTCAATTCGTTTGTGAAAGTTTCAATGATAAAACTGTTATATCACAAAATCAAACTAATTTTCAGGATTGACTTTTTGCCATTATAACAAAAAACTCAAATCGAAGCAAATCAAAAACGATAGGTTCCACCGAGATTTGAACTCGGGTCGCAGGATTCAGAGTCCTGAGTGCTAACCGCTACACCATGGAACCGCACGAGATGCGTATAGTGTGRTCTTTACAATAAGGCGCCGCTGGCCGCTGGCCGTCGCCGTTTTTCTGTTGTTCGAAAAGATAATATGTGTGTGGTTGAACAGATGGTGGCACACAACAAATGGCTCTTGTTCTTTTTTTTCACAAAAAGAACATTTTACACTTTGAAAAAAACGATTTGATATTTATTGACAATGATGTATGATATTATGTTTTGTAATACTCAAAAGTAAGTTTAGAAAAAATTGTAAACTAAAAAGTAATACCAAGTCACAATACGATAGGTTCCACGAAATTGTCATTTTTAAGAAGTTTGAACGTTACAAAAAATCATAATTCTCTGAAAAGCGTGACGTATGATTCATTTTTCTTATTTCCCAAGTATTGTATTTGAGAATTTTTTTTGTCTTTTCCATAGCTCTCCCCCTATGTTCGACATGATTCACATGCATAAAACAATATATTTTCGTGCTTTTTTTTCAGATACAAGGGGAACCAACCATGTCAGAAAGGAAACCTACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>499 278 223</canonical_bands>
                <polymorphic_bands>722 278</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>499 223 195 83</canonical_bands>
                <polymorphic_bands>722 195 83</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAACTAATTTTCAGGATTGAC</pcr_primer_p1>
		<pcr_primer_p2>TCAACCACACACATATTATCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TCAAACTAATTTTCAGGATTGACTTTTTGCCATTATAACAAAAAACTCAAATCGAAGCAAATCAAAAACGATAGGTTCCACCGAGATTTGAACTCGGGTCGCAGGATTCAGAGTCCTGAGTGCTAACCGCTACACCATGGAACCGCACGAGATGCGTATAGTGTGCTCTTTACAATAAGGCGCCGCTGGCCGCTGGCCGTCGCCGTTTTTCTGTTGTTCGAAAAGATAATATGTGTGTGGTTGA</canonical_amplicon>
		<polymorphic_amplicon>TCAAACTAATTTTCAGGATTGACTTTTTGCCATTATAACAAAAAACTCAAATCGAAGCAAATCAAAAACGATAGGTTCCACCGAGATTTGAACTCGGGTCGCAGGATTCAGAGTCCTGAGTGCTAACCGCTACACCATGGAACCGCACGAGATGCGTATAGTGTGRTCTTTACAATAAGGCGCCGCTGGCCGCTGGCCGTCGCCGTTTTTCTGTTGTTCGAAAAGATAATATGTGTGTGGTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24342</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>263170</contig_pos>
        <strand>-</strand>
        <context>TGTGGTTGAA[C/G]AGATGGTGGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCCGTCGCCGTTTTTCTGTTGTTCGAAAAGATAATATGTGTGTGGTTGAA</left_flank>
        <right_flank>AGATGGTGGCACACAACAAATGGCTCTTGTTCTTTTTTTTCACAAAAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGTGCGGTTCCATGGTGTAGCGGTTAGCACTCAGGACTCTGAATCCTGCGACCCGAGTTCAAATCTCGGTGGGACCTATCGTTTTTGTTTAATTTTTTTTGAGTTAGAGGGCACGCGCACATTACGGAGAACGACGAAAAAAATCCCAAAAATGAAAACTTCGAATTTTCGGATGCAAAAACTCGCAATTTGAGCTCAACTATCTCAATTCGTTTGTGAAAGTTTCAATGATAAAACTGTTATATCACAAAATCAAACTAATTTTCAGGATTGACTTTTTGCCATTATAACAAAAAACTCAAATCGAAGCAAATCAAAAACGATAGGTTCCACCGAGATTTGAACTCGGGTCGCAGGATTCAGAGTCCTGAGTGCTAACCGCTACACCATGGAACCGCACGAGATGCGTATAGTGTGCTCTTTACAATAAGGCGCCGCTGGCCGCTGGCCGTCGCCGTTTTTCTGTTGTTCGAAAAGATAATATGTGTGTGGTTGAACAGATGGTGGCACACAACAAATGGCTCTTGTTCTTTTTTTTCACAAAAAGAACATTTTACACTTTGAAAAAAACGATTTGATATTTATTGACAATGATGTATGATATTATGTTTTGTAATACTCAAAAGTAAGTTTAGAAAAAATTGTAAACTAAAAAGTAATACCAAGTCACAATACGATAGGTTCCACGAAATTGTCATTTTTAAGAAGTTTGAACGTTACAAAAAATCATAATTCTCTGAAAAGCGTGACGTATGATTCATTTTTCTTATTTCCCAAGTATTGTATTTGAGAATTTTTTTTGTCTTTTCCATAGCTCTCCCCCTATGTTCGACATGATTCACATGCATAAAACAATATATTTTCGTGCTTTTTTTTCAGATACAAGGGGAACCAACCATGTCAGAAAGGAAACCTACGGCACCAGGAATGCCGTCAGTGATGTCTTTGCTACAAACTGATGAAATACTGTCGTCGTGCTCGGATGATGAACCGTNNNN</canonical>
            <polymorphic>CTCGTGCGGTTCCATGGTGTAGCGGTTAGCACTCAGGACTCTGAATCCTGCGACCCGAGTTCAAATCTCGGTGGGACCTATCGTTTTTGTTTAATTTTTTTTGAGTTAGAGGGCACGCGCACATTACGGAGAACGACGAAAAAAATCCCAAAAATGAAAACTTCGAATTTTCGGATGCAAAAACTCGCAATTTGAGCTCAACTATCTCAATTCGTTTGTGAAAGTTTCAATGATAAAACTGTTATATCACAAAATCAAACTAATTTTCAGGATTGACTTTTTGCCATTATAACAAAAAACTCAAATCGAAGCAAATCAAAAACGATAGGTTCCACCGAGATTTGAACTCGGGTCGCAGGATTCAGAGTCCTGAGTGCTAACCGCTACACCATGGAACCGCACGAGATGCGTATAGTGTGCTCTTTACAATAAGGCGCCGCTGGCCGCTGGCCGTCGCCGTTTTTCTGTTGTTCGAAAAGATAATATGTGTGTGGTTGAASAGATGGTGGCACACAACAAATGGCTCTTGTTCTTTTTTTTCACAAAAAGAACATTTTACACTTTGAAAAAAACGATTTGATATTTATTGACAATGATGTATGATATTATGTTTTGTAATACTCAAAAGTAAGTTTAGAAAAAATTGTAAACTAAAAAGTAATACCAAGTCACAATACGATAGGTTCCACGAAATTGTCATTTTTAAGAAGTTTGAACGTTACAAAAAATCATAATTCTCTGAAAAGCGTGACGTATGATTCATTTTTCTTATTTCCCAAGTATTGTATTTGAGAATTTTTTTTGTCTTTTCCATAGCTCTCCCCCTATGTTCGACATGATTCACATGCATAAAACAATATATTTTCGTGCTTTTTTTTCAGATACAAGGGGAACCAACCATGTCAGAAAGGAAACCTACGGCACCAGGAATGCCGTCAGTGATGTCTTTGCTACAAACTGATGAAATACTGTCGTCGTGCTCGGATGATGAACCGTNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCAAAAACGATAGGTTCC</pcr_primer_p1>
		<pcr_primer_p2>TGTAAAATGTTCTTTTTGTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAATCAAAAACGATAGGTTCCACCGAGATTTGAACTCGGGTCGCAGGATTCAGAGTCCTGAGTGCTAACCGCTACACCATGGAACCGCACGAGATGCGTATAGTGTGCTCTTTACAATAAGGCGCCGCTGGCCGCTGGCCGTCGCCGTTTTTCTGTTGTTCGAAAAGATAATATGTGTGTGGTTGAACAGATGGTGGCACACAACAAATGGCTCTTGTTCTTTTTTTTCACAAAAAGAACATTTTACA</canonical_amplicon>
		<polymorphic_amplicon>AAATCAAAAACGATAGGTTCCACCGAGATTTGAACTCGGGTCGCAGGATTCAGAGTCCTGAGTGCTAACCGCTACACCATGGAACCGCACGAGATGCGTATAGTGTGCTCTTTACAATAAGGCGCCGCTGGCCGCTGGCCGTCGCCGTTTTTCTGTTGTTCGAAAAGATAATATGTGTGTGGTTGAASAGATGGTGGCACACAACAAATGGCTCTTGTTCTTTTTTTTCACAAAAAGAACATTTTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24343</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>263200</contig_pos>
        <strand>-</strand>
        <context>ATGGCTCTTG[A/T]TCTTTTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATAATATGTGTGTGGTTGAACAGATGGTGGCACACAACAAATGGCTCTTG</left_flank>
        <right_flank>TCTTTTTTTTCACAAAAAGAACATTTTACACTTTGAAAAAAACGATTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCAGGACTCTGAATCCTGCGACCCGAGTTCAAATCTCGGTGGGACCTATCGTTTTTGTTTAATTTTTTTTGAGTTAGAGGGCACGCGCACATTACGGAGAACGACGAAAAAAATCCCAAAAATGAAAACTTCGAATTTTCGGATGCAAAAACTCGCAATTTGAGCTCAACTATCTCAATTCGTTTGTGAAAGTTTCAATGATAAAACTGTTATATCACAAAATCAAACTAATTTTCAGGATTGACTTTTTGCCATTATAACAAAAAACTCAAATCGAAGCAAATCAAAAACGATAGGTTCCACCGAGATTTGAACTCGGGTCGCAGGATTCAGAGTCCTGAGTGCTAACCGCTACACCATGGAACCGCACGAGATGCGTATAGTGTGCTCTTTACAATAAGGCGCCGCTGGCCGCTGGCCGTCGCCGTTTTTCTGTTGTTCGAAAAGATAATATGTGTGTGGTTGAACAGATGGTGGCACACAACAAATGGCTCTTGTTCTTTTTTTTCACAAAAAGAACATTTTACACTTTGAAAAAAACGATTTGATATTTATTGACAATGATGTATGATATTATGTTTTGTAATACTCAAAAGTAAGTTTAGAAAAAATTGTAAACTAAAAAGTAATACCAAGTCACAATACGATAGGTTCCACGAAATTGTCATTTTTAAGAAGTTTGAACGTTACAAAAAATCATAATTCTCTGAAAAGCGTGACGTATGATTCATTTTTCTTATTTCCCAAGTATTGTATTTGAGAATTTTTTTTGTCTTTTCCATAGCTCTCCCCCTATGTTCGACATGATTCACATGCATAAAACAATATATTTTCGTGCTTTTTTTTCAGATACAAGGGGAACCAACCATGTCAGAAAGGAAACCTACGGCACCAGGAATGCCGTCAGTGATGTCTTTGCTACAAACTGATGAAATACTGTCGTCGTGCTCGGATGATGAACCGTNNNNNNNNNNAACTGTTATATCACAAAATCAAAC</canonical>
            <polymorphic>ACTCAGGACTCTGAATCCTGCGACCCGAGTTCAAATCTCGGTGGGACCTATCGTTTTTGTTTAATTTTTTTTGAGTTAGAGGGCACGCGCACATTACGGAGAACGACGAAAAAAATCCCAAAAATGAAAACTTCGAATTTTCGGATGCAAAAACTCGCAATTTGAGCTCAACTATCTCAATTCGTTTGTGAAAGTTTCAATGATAAAACTGTTATATCACAAAATCAAACTAATTTTCAGGATTGACTTTTTGCCATTATAACAAAAAACTCAAATCGAAGCAAATCAAAAACGATAGGTTCCACCGAGATTTGAACTCGGGTCGCAGGATTCAGAGTCCTGAGTGCTAACCGCTACACCATGGAACCGCACGAGATGCGTATAGTGTGCTCTTTACAATAAGGCGCCGCTGGCCGCTGGCCGTCGCCGTTTTTCTGTTGTTCGAAAAGATAATATGTGTGTGGTTGAACAGATGGTGGCACACAACAAATGGCTCTTGWTCTTTTTTTTCACAAAAAGAACATTTTACACTTTGAAAAAAACGATTTGATATTTATTGACAATGATGTATGATATTATGTTTTGTAATACTCAAAAGTAAGTTTAGAAAAAATTGTAAACTAAAAAGTAATACCAAGTCACAATACGATAGGTTCCACGAAATTGTCATTTTTAAGAAGTTTGAACGTTACAAAAAATCATAATTCTCTGAAAAGCGTGACGTATGATTCATTTTTCTTATTTCCCAAGTATTGTATTTGAGAATTTTTTTTGTCTTTTCCATAGCTCTCCCCCTATGTTCGACATGATTCACATGCATAAAACAATATATTTTCGTGCTTTTTTTTCAGATACAAGGGGAACCAACCATGTCAGAAAGGAAACCTACGGCACCAGGAATGCCGTCAGTGATGTCTTTGCTACAAACTGATGAAATACTGTCGTCGTGCTCGGATGATGAACCGTNNNNNNNNNNAACTGTTATATCACAAAATCAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTCGAAAAGATAATATGTGTG</pcr_primer_p1>
		<pcr_primer_p2>CGTTCAAACTTCTTAAAAATGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTTCGAAAAGATAATATGTGTGTGGTTGAACAGATGGTGGCACACAACAAATGGCTCTTGTTCTTTTTTTTCACAAAAAGAACATTTTACACTTTGAAAAAAACGATTTGATATTTATTGACAATGATGTATGATATTATGTTTTGTAATACTCAAAAGTAAGTTTAGAAAAAATTGTAAACTAAAAAGTAATACCAAGTCACAATACGATAGGTTCCACGAAATTGTCATTTTTAAGAAGTTTGAACG</canonical_amplicon>
		<polymorphic_amplicon>TGTTCGAAAAGATAATATGTGTGTGGTTGAACAGATGGTGGCACACAACAAATGGCTCTTGWTCTTTTTTTTCACAAAAAGAACATTTTACACTTTGAAAAAAACGATTTGATATTTATTGACAATGATGTATGATATTATGTTTTGTAATACTCAAAAGTAAGTTTAGAAAAAATTGTAAACTAAAAAGTAATACCAAGTCACAATACGATAGGTTCCACGAAATTGTCATTTTTAAGAAGTTTGAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24344</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>295581</contig_pos>
        <strand>+</strand>
        <context>TCCTTCTCGG[G/T]GTTTCAGGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGCACAGAATTTTTTCCGTTCTAATTCCCATTCATTTCATTCCTTCTCGG</left_flank>
        <right_flank>GTTTCAGGAAAAATGTATTTTCGATATTAAGTCTTGGTTTAAGTATTGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTCTAGTTTCAACCTCAACATATCTGAAGAGGAAAGAGCTTGTGTAGCCATTCCAGCTGGGAACGAACTCGACGGAGGACCGCTCGGCAGACAACCAGTGGAGAATCTTTAAGAAAATAATCTTCTTGCTCCTCAATCAATAATTTTGTTCAAACGAATTGTCATTTCAATTTATTTCATTTTCTCATACACTCTTAAATCACCGCTGTACATTTAAAGCTTTCCAGTTCTACTACACTTATTTGCCTTCACTTTATTTTTCTATACCTGTAGTTAAGAATGCTCAACAGTCCCCTTACAAACCAAACAAAATCATCGTGTATCTTCACTTATTTTGTTATTATTTCTTTGTTTCTCCCTCATTCATAACTTTCCCTGTTTTTTTGACCAATGGGTATAACTTCTATAATGACCTTCCTAACCATGAAAGAATAATCTCCTTTTCCTGAGCACAGAATTTTTTCCGTTCTAATTCCCATTCATTTCATTCCTTCTCGGTGTTTCAGGAAAAATGTATTTTCGATATTAAGTCTTGGTTTAAGTATTGTACAAGTTAGAAATAAATGCTTTTTGGGAAGCACTTTTTGTTTCAAAAAGAATAGAGTTTTAAGATAATAACAATCAGAACATGGAAGCAGTTCATTTATCAAACCACAATGTTTCCTGATTGCTTCCCGGTTAGGGCAAAGCTCAGAAAAAAAAACCACGAAATAATGGATTTCATTGTGCCGAATGAACTGGACATCATTGAGCACTCACTGTTTTCAAATTTCAAACTTTATGGGATCACACTTCATGTGTTTGACATACATATATCCTGGTCATGACCACCTACACAGTTTTTTTCATCTCCCGTATGTTCCTCTCGAAACAACTCAAATTCGCGACATTTTCCAAGTTCGAAAAAGTTGTCCTCTCGAAATTTATGATGTTGAGTTAGATGAAGTGCTGCTCAGACACAGGAAGCATTAATGCCCGCGGGGCTCGTTTGGTGGCAAT</canonical>
            <polymorphic>CCTCTAGTTTCAACCTCAACATATCTGAAGAGGAAAGAGCTTGTGTAGCCATTCCAGCTGGGAACGAACTCGACGGAGGACCGCTCGGCAGACAACCAGTGGAGAATCTTTAAGAAAATAATCTTCTTGCTCCTCAATCAATAATTTTGTTCAAACGAATTGTCATTTCAATTTATTTCATTTTCTCATACACTCTTAAATCACCGCTGTACATTTAAAGCTTTCCAGTTCTACTACACTTATTTGCCTTCACTTTATTTTTCTATACCTGTAGTTAAGAATGCTCAACAGTCCCCTTACAAACCAAACAAAATCATCGTGTATCTTCACTTATTTTGTTATTATTTCTTTGTTTCTCCCTCATTCATAACTTTCCCTGTTTTTTTGACCAATGGGTATAACTTCTATAATGACCTTCCTAACCATGAAAGAATAATCTCCTTTTCCTGAGCACAGAATTTTTTCCGTTCTAATTCCCATTCATTTCATTCCTTCTCGGKGTTTCAGGAAAAATGTATTTTCGATATTAAGTCTTGGTTTAAGTATTGTACAAGTTAGAAATAAATGCTTTTTGGGAAGCACTTTTTGTTTCAAAAAGAATAGAGTTTTAAGATAATAACAATCAGAACATGGAAGCAGTTCATTTATCAAACCACAATGTTTCCTGATTGCTTCCCGGTTAGGGCAAAGCTCAGAAAAAAAAACCACGAAATAATGGATTTCATTGTGCCGAATGAACTGGACATCATTGAGCACTCACTGTTTTCAAATTTCAAACTTTATGGGATCACACTTCATGTGTTTGACATACATATATCCTGGTCATGACCACCTACACAGTTTTTTTCATCTCCCGTATGTTCCTCTCGAAACAACTCAAATTCGCGACATTTTCCAAGTTCGAAAAAGTTGTCCTCTCGAAATTTATGATGTTGAGTTAGATGAAGTGCTGCTCAGACACAGGAAGCATTAATGCCCGCGGGGCTCGTTTGGTGGCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>124 112 91 80 74 69 56 52 48 45 35 35 31 30 26 22 14 11 11 9 8 6 5 4 2</canonical_bands>
                <polymorphic_bands>128 124 112 91 74 69 56 52 45 35 35 31 30 26 22 14 11 11 9 8 6 5 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCTTCCTAACCATGAAAGAATA</pcr_primer_p1>
		<pcr_primer_p2>ACATTGTGGTTTGATAAATGAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACCTTCCTAACCATGAAAGAATAATCTCCTTTTCCTGAGCACAGAATTTTTTCCGTTCTAATTCCCATTCATTTCATTCCTTCTCGGTGTTTCAGGAAAAATGTATTTTCGATATTAAGTCTTGGTTTAAGTATTGTACAAGTTAGAAATAAATGCTTTTTGGGAAGCACTTTTTGTTTCAAAAAGAATAGAGTTTTAAGATAATAACAATCAGAACATGGAAGCAGTTCATTTATCAAACCACAATGT</canonical_amplicon>
		<polymorphic_amplicon>ACCTTCCTAACCATGAAAGAATAATCTCCTTTTCCTGAGCACAGAATTTTTTCCGTTCTAATTCCCATTCATTTCATTCCTTCTCGGKGTTTCAGGAAAAATGTATTTTCGATATTAAGTCTTGGTTTAAGTATTGTACAAGTTAGAAATAAATGCTTTTTGGGAAGCACTTTTTGTTTCAAAAAGAATAGAGTTTTAAGATAATAACAATCAGAACATGGAAGCAGTTCATTTATCAAACCACAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24345</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>300133</contig_pos>
        <strand>+</strand>
        <context>CACCAAAAAA[A/C]AGGACCAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAACTCACTTCGATTAGAAAACGTGCATCACTTCAGAAGTCACCAAAAAA</left_flank>
        <right_flank>AGGACCAAAACGTATTTCTGCAGATTCCCACCGACGTTTTATATTTTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACATTTAGTTTTCACTTTCGTGAAAATAATTTTGAGAAGTGAGAAGAGGCTTAATCAATAATATCGAAACATTACGGTACAGAAAAAGTAATACGGTGATTTCAAATTTTAGGGCATTTGACAGCAACCCGATAACCTTCTTTTGACTTCACTCGTACATCCCGCTACTCTTTTCGATACAGCTTGTCAAACTGACCACTAGAAATGGACATTCAATGTTTTTCGTTTTTTTTTTCCGTGCTCTGTCAATTCCCCTGTTCGACTTACGTGTGATGTGTATGTGTGTGCAGTAGTGGATTTGGCGGTGCTTCCCTCGACCCGCCACATGATTCACTAACATATGCAAATCGGTCTTCCGACGACATGGATGGGAAGGATAGGCAGGAAAGTTGCCTTTTCAGAAAAGGCGAGGCCCAAGTCAGTGGAAGAGATGAAGAAAAGAAAAAAGCAACTCACTTCGATTAGAAAACGTGCATCACTTCAGAAGTCACCAAAAAAAAGGACCAAAACGTATTTCTGCAGATTCCCACCGACGTTTTATATTTTTGATAATTGCGGCCGTTTTTGAACGAATATTTTTATTTTTTACTTTATCTCACGGAAAATTTACAGAACCGTATTCTTTTTTTCTGAAAACAAATAGATCTGAAAGCATAAAAATGCGCTGTCAAATAATTTTTACATTTAAGAGGAAGAACGAATTACCGTATCTTATAAGCCTATTTTGAACTTTATTATTCCATTGTCTCAATTTTCCGACAATTAAAAAATACTTTTCGTGAAAAAAAGGAGAATAAAGGTTAAAATAGATTCATAAAATACGGTAGTTCGCTCTTGCGCCTATAAGAAAGCTCAGAAAATATATCAGCTCTTCAATTAAAACATCACGATAATTTTTTGCAAGACGTTTAACGGAATTTAGTGAAAATTCTCTGGAAAGGTTCTGCTATCATCTTTTGGCTTTTTTTTTTGAAAAAAAACTAGTTGTCACAGTTTGGG</canonical>
            <polymorphic>TACATTTAGTTTTCACTTTCGTGAAAATAATTTTGAGAAGTGAGAAGAGGCTTAATCAATAATATCGAAACATTACGGTACAGAAAAAGTAATACGGTGATTTCAAATTTTAGGGCATTTGACAGCAACCCGATAACCTTCTTTTGACTTCACTCGTACATCCCGCTACTCTTTTCGATACAGCTTGTCAAACTGACCACTAGAAATGGACATTCAATGTTTTTCGTTTTTTTTTTCCGTGCTCTGTCAATTCCCCTGTTCGACTTACGTGTGATGTGTATGTGTGTGCAGTAGTGGATTTGGCGGTGCTTCCCTCGACCCGCCACATGATTCACTAACATATGCAAATCGGTCTTCCGACGACATGGATGGGAAGGATAGGCAGGAAAGTTGCCTTTTCAGAAAAGGCGAGGCCCAAGTCAGTGGAAGAGATGAAGAAAAGAAAAAAGCAACTCACTTCGATTAGAAAACGTGCATCACTTCAGAAGTCACCAAAAAAMAGGACCAAAACGTATTTCTGCAGATTCCCACCGACGTTTTATATTTTTGATAATTGCGGCCGTTTTTGAACGAATATTTTTATTTTTTACTTTATCTCACGGAAAATTTACAGAACCGTATTCTTTTTTTCTGAAAACAAATAGATCTGAAAGCATAAAAATGCGCTGTCAAATAATTTTTACATTTAAGAGGAAGAACGAATTACCGTATCTTATAAGCCTATTTTGAACTTTATTATTCCATTGTCTCAATTTTCCGACAATTAAAAAATACTTTTCGTGAAAAAAAGGAGAATAAAGGTTAAAATAGATTCATAAAATACGGTAGTTCGCTCTTGCGCCTATAAGAAAGCTCAGAAAATATATCAGCTCTTCAATTAAAACATCACGATAATTTTTTGCAAGACGTTTAACGGAATTTAGTGAAAATTCTCTGGAAAGGTTCTGCTATCATCTTTTGGCTTTTTTTTTTGAAAAAAAACTAGTTGTCACAGTTTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCAGTGGAAGAGATGAAGA</pcr_primer_p1>
		<pcr_primer_p2>GCATTTTTATGCTTTCAGATCTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGTCAGTGGAAGAGATGAAGAAAAGAAAAAAGCAACTCACTTCGATTAGAAAACGTGCATCACTTCAGAAGTCACCAAAAAAAAGGACCAAAACGTATTTCTGCAGATTCCCACCGACGTTTTATATTTTTGATAATTGCGGCCGTTTTTGAACGAATATTTTTATTTTTTACTTTATCTCACGGAAAATTTACAGAACCGTATTCTTTTTTTCTGAAAACAAATAGATCTGAAAGCATAAAAATGC</canonical_amplicon>
		<polymorphic_amplicon>AAGTCAGTGGAAGAGATGAAGAAAAGAAAAAAGCAACTCACTTCGATTAGAAAACGTGCATCACTTCAGAAGTCACCAAAAAAMAGGACCAAAACGTATTTCTGCAGATTCCCACCGACGTTTTATATTTTTGATAATTGCGGCCGTTTTTGAACGAATATTTTTATTTTTTACTTTATCTCACGGAAAATTTACAGAACCGTATTCTTTTTTTCTGAAAACAAATAGATCTGAAAGCATAAAAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24346</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>302805</contig_pos>
        <strand></strand>
        <context>cagaactttt[T/C]gaaaaytcct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTT</left_flank>
        <right_flank>GAAAATTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTC</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTTTTTCTGTTTTTTTTACCTCTCATTTTTTGGTTTTATTTCGACCCTCTTATTTTTCGGGATCAGTTTTTTCGGGATGATTTTCAAACATCAAAAAATACCTGAGTTATCATCCGTAGTAAACAAAACTATTGAGGACGACGGGCTTTGAGACGAATAACTGATAAGGGCACAAATTTAGAAGCTTTGAAGGATCAAAGTTGAAGGTTCTAGAATAAAAGAGTAGTCGGTGAGGTAGCACTAAATTCAGAATAGTGAGTTTTGGAGAGTTTTCATTAAATCTGGATTTTTCAAGTCATTTTTCGTATGTATATCATAATTTTGGCTATTTTCATTTAGGAAATTTAAAGAAAACAGAATATCAAAAATGGAAAATTAGTTGTCGAGCTATTTTTGTAAGAATTTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTTGAAAATTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTACCAAAATAGGGCAAAAAGAGGTGTCTTCTAGTGATCGGCAAATAGCTGAAAACTAGGAATTTTTAAAAATTCTGTGTAATCAACGTTTTCAATCTTGGTCTGTTCAACACCCTTCAAAATTTTCAAAGTGATCGAAAACTTGGCAGTCAAGTTCCAGACGACTGAAAACGGCCATAATGACGGCAAATCAGCTGGAAATTTTTTTTAAATTTTTGATTGCCCGGTATTACGTATCATAGCTTAGATCATATTCATTTGGGAATTACTAAAAAATATATTGTTAAAAAATGGAGAATGAATTCCCGAGTTTTTATTGTTAGCATCTCGCAAGCCGAGAACTATTGATATCTTCAACTGAATCATAAGAAAATTTCATAACTTATGTATTTTGCTGAAAAAAAGCAATTTTCCAATTTTTGATCATTTCCTCTCATAG</canonical>
            <polymorphic>ATCTTTTTCTGTTTTTTTTACCTCTCATTTTTTGGTTTTATTTCGACCCTCTTATTTTTCGGGATCAGTTTTTTCGGGATGATTTTCAAACATCAAAAAATACCTGAGTTATCATCCGTAGTAAACAAAACTATTGAGGACGACGGGCTTTGAGACGAATAACTGATAAGGGCACAAATTTAGAAGCTTTGAAGGATCAAAGTTGAAGGTTCTAGAATAAAAGAGTAGTCGGTGAGGTAGCACTAAATTCAGAATAGTGAGTTTTGGAGAGTTTTCATTAAATCTGGATTTTTCAAGTCATTTTTCGTATGTATATCATAATTTTGGCTATTTTCATTTAGGAAATTTAAAGAAAACAGAATATCAAAAATGGAAAATTAGTTGTCGAGCTATTTTTGTAAGAATTTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTYGAAAATTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTACCAAAATAGGGCAAAAAGAGGTGTCTTCTAGTGATCGGCAAATAGCTGAAAACTAGGAATTTTTAAAAATTCTGTGTAATCAACGTTTTCAATCTTGGTCTGTTCAACACCCTTCAAAATTTTCAAAGTGATCGAAAACTTGGCAGTCAAGTTCCAGACGACTGAAAACGGCCATAATGACGGCAAATCAGCTGGAAATTTTTTTTAAATTTTTGATTGCCCGGTATTACGTATCATAGCTTAGATCATATTCATTTGGGAATTACTAAAAAATATATTGTTAAAAAATGGAGAATGAATTCCCGAGTTTTTATTGTTAGCATCTCGCAAGCCGAGAACTATTGATATCTTCAACTGAATCATAAGAAAATTTCATAACTTATGTATTTTGCTGAAAAAAAGCAATTTTCCAATTTTTGATCATTTCCTCTCATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTAAGTCAAGCCACCAC</pcr_primer_p1>
		<pcr_primer_p2>TTCCCAAATGAATATGATCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>421</pcr_amplicon_size>
		<canonical_amplicon>TTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTTGAAAATTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTACCAAAATAGGGCAAAAAGAGGTGTCTTCTAGTGATCGGCAAATAGCTGAAAACTAGGAATTTTTAAAAATTCTGTGTAATCAACGTTTTCAATCTTGGTCTGTTCAACACCCTTCAAAATTTTCAAAGTGATCGAAAACTTGGCAGTCAAGTTCCAGACGACTGAAAACGGCCATAATGACGGCAAATCAGCTGGAAATTTTTTTTAAATTTTTGATTGCCCGGTATTACGTATCATAGCTTAGATCATATTCATTTGGGAA</canonical_amplicon>
		<polymorphic_amplicon>TTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTYGAAAATTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTACCAAAATAGGGCAAAAAGAGGTGTCTTCTAGTGATCGGCAAATAGCTGAAAACTAGGAATTTTTAAAAATTCTGTGTAATCAACGTTTTCAATCTTGGTCTGTTCAACACCCTTCAAAATTTTCAAAGTGATCGAAAACTTGGCAGTCAAGTTCCAGACGACTGAAAACGGCCATAATGACGGCAAATCAGCTGGAAATTTTTTTTAAATTTTTGATTGCCCGGTATTACGTATCATAGCTTAGATCATATTCATTTGGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24347</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>302811</contig_pos>
        <strand></strand>
        <context>ttttygaaaa[T/C]tcctagtttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTTGAAAA</left_flank>
        <right_flank>TCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGTTTTTTTTACCTCTCATTTTTTGGTTTTATTTCGACCCTCTTATTTTTCGGGATCAGTTTTTTCGGGATGATTTTCAAACATCAAAAAATACCTGAGTTATCATCCGTAGTAAACAAAACTATTGAGGACGACGGGCTTTGAGACGAATAACTGATAAGGGCACAAATTTAGAAGCTTTGAAGGATCAAAGTTGAAGGTTCTAGAATAAAAGAGTAGTCGGTGAGGTAGCACTAAATTCAGAATAGTGAGTTTTGGAGAGTTTTCATTAAATCTGGATTTTTCAAGTCATTTTTCGTATGTATATCATAATTTTGGCTATTTTCATTTAGGAAATTTAAAGAAAACAGAATATCAAAAATGGAAAATTAGTTGTCGAGCTATTTTTGTAAGAATTTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTTGAAAATTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTACCAAAATAGGGCAAAAAGAGGTGTCTTCTAGTGATCGGCAAATAGCTGAAAACTAGGAATTTTTAAAAATTCTGTGTAATCAACGTTTTCAATCTTGGTCTGTTCAACACCCTTCAAAATTTTCAAAGTGATCGAAAACTTGGCAGTCAAGTTCCAGACGACTGAAAACGGCCATAATGACGGCAAATCAGCTGGAAATTTTTTTTAAATTTTTGATTGCCCGGTATTACGTATCATAGCTTAGATCATATTCATTTGGGAATTACTAAAAAATATATTGTTAAAAAATGGAGAATGAATTCCCGAGTTTTTATTGTTAGCATCTCGCAAGCCGAGAACTATTGATATCTTCAACTGAATCATAAGAAAATTTCATAACTTATGTATTTTGCTGAAAAAAAGCAATTTTCCAATTTTTGATCATTTCCTCTCATAGGAACAC</canonical>
            <polymorphic>TTCTGTTTTTTTTACCTCTCATTTTTTGGTTTTATTTCGACCCTCTTATTTTTCGGGATCAGTTTTTTCGGGATGATTTTCAAACATCAAAAAATACCTGAGTTATCATCCGTAGTAAACAAAACTATTGAGGACGACGGGCTTTGAGACGAATAACTGATAAGGGCACAAATTTAGAAGCTTTGAAGGATCAAAGTTGAAGGTTCTAGAATAAAAGAGTAGTCGGTGAGGTAGCACTAAATTCAGAATAGTGAGTTTTGGAGAGTTTTCATTAAATCTGGATTTTTCAAGTCATTTTTCGTATGTATATCATAATTTTGGCTATTTTCATTTAGGAAATTTAAAGAAAACAGAATATCAAAAATGGAAAATTAGTTGTCGAGCTATTTTTGTAAGAATTTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTTGAAAAYTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTACCAAAATAGGGCAAAAAGAGGTGTCTTCTAGTGATCGGCAAATAGCTGAAAACTAGGAATTTTTAAAAATTCTGTGTAATCAACGTTTTCAATCTTGGTCTGTTCAACACCCTTCAAAATTTTCAAAGTGATCGAAAACTTGGCAGTCAAGTTCCAGACGACTGAAAACGGCCATAATGACGGCAAATCAGCTGGAAATTTTTTTTAAATTTTTGATTGCCCGGTATTACGTATCATAGCTTAGATCATATTCATTTGGGAATTACTAAAAAATATATTGTTAAAAAATGGAGAATGAATTCCCGAGTTTTTATTGTTAGCATCTCGCAAGCCGAGAACTATTGATATCTTCAACTGAATCATAAGAAAATTTCATAACTTATGTATTTTGCTGAAAAAAAGCAATTTTCCAATTTTTGATCATTTCCTCTCATAGGAACAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>170 118 101 98 90 79 74 71 69 59 50 11 10</canonical_bands>
                <polymorphic_bands>219 170 98 90 79 74 71 69 59 50 11 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>170 118 79 74 71 69 53 50 37 36 35 32 32 31 27 24 19 14 11 10 8</canonical_bands>
                <polymorphic_bands>170 137 79 74 71 69 53 50 37 36 35 32 32 31 27 24 14 11 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGTAAGTCAAGCCACCAC</pcr_primer_p1>
		<pcr_primer_p2>TTCCCAAATGAATATGATCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>421</pcr_amplicon_size>
		<canonical_amplicon>TTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTTGAAAATTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTACCAAAATAGGGCAAAAAGAGGTGTCTTCTAGTGATCGGCAAATAGCTGAAAACTAGGAATTTTTAAAAATTCTGTGTAATCAACGTTTTCAATCTTGGTCTGTTCAACACCCTTCAAAATTTTCAAAGTGATCGAAAACTTGGCAGTCAAGTTCCAGACGACTGAAAACGGCCATAATGACGGCAAATCAGCTGGAAATTTTTTTTAAATTTTTGATTGCCCGGTATTACGTATCATAGCTTAGATCATATTCATTTGGGAA</canonical_amplicon>
		<polymorphic_amplicon>TTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTTGAAAAYTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTACCAAAATAGGGCAAAAAGAGGTGTCTTCTAGTGATCGGCAAATAGCTGAAAACTAGGAATTTTTAAAAATTCTGTGTAATCAACGTTTTCAATCTTGGTCTGTTCAACACCCTTCAAAATTTTCAAAGTGATCGAAAACTTGGCAGTCAAGTTCCAGACGACTGAAAACGGCCATAATGACGGCAAATCAGCTGGAAATTTTTTTTAAATTTTTGATTGCCCGGTATTACGTATCATAGCTTAGATCATATTCATTTGGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24348</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>302871</contig_pos>
        <strand></strand>
        <context>tttttagtac[C/A]aaaatagggc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTAC</left_flank>
        <right_flank>AAAATAGGGCAAAAAGAGGTGTCTTCTAGTGATCGGCAAATAGCTGAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTTTTTCGGGATGATTTTCAAACATCAAAAAATACCTGAGTTATCATCCGTAGTAAACAAAACTATTGAGGACGACGGGCTTTGAGACGAATAACTGATAAGGGCACAAATTTAGAAGCTTTGAAGGATCAAAGTTGAAGGTTCTAGAATAAAAGAGTAGTCGGTGAGGTAGCACTAAATTCAGAATAGTGAGTTTTGGAGAGTTTTCATTAAATCTGGATTTTTCAAGTCATTTTTCGTATGTATATCATAATTTTGGCTATTTTCATTTAGGAAATTTAAAGAAAACAGAATATCAAAAATGGAAAATTAGTTGTCGAGCTATTTTTGTAAGAATTTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTTGAAAATTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTACCAAAATAGGGCAAAAAGAGGTGTCTTCTAGTGATCGGCAAATAGCTGAAAACTAGGAATTTTTAAAAATTCTGTGTAATCAACGTTTTCAATCTTGGTCTGTTCAACACCCTTCAAAATTTTCAAAGTGATCGAAAACTTGGCAGTCAAGTTCCAGACGACTGAAAACGGCCATAATGACGGCAAATCAGCTGGAAATTTTTTTTAAATTTTTGATTGCCCGGTATTACGTATCATAGCTTAGATCATATTCATTTGGGAATTACTAAAAAATATATTGTTAAAAAATGGAGAATGAATTCCCGAGTTTTTATTGTTAGCATCTCGCAAGCCGAGAACTATTGATATCTTCAACTGAATCATAAGAAAATTTCATAACTTATGTATTTTGCTGAAAAAAAGCAATTTTCCAATTTTTGATCATTTCCTCTCATAGGAACACGCACGAGAATGATTGGTGGTGTTGCGTATATCATCCTCGCTCCTGAAAAATGAACCCACC</canonical>
            <polymorphic>AGTTTTTTCGGGATGATTTTCAAACATCAAAAAATACCTGAGTTATCATCCGTAGTAAACAAAACTATTGAGGACGACGGGCTTTGAGACGAATAACTGATAAGGGCACAAATTTAGAAGCTTTGAAGGATCAAAGTTGAAGGTTCTAGAATAAAAGAGTAGTCGGTGAGGTAGCACTAAATTCAGAATAGTGAGTTTTGGAGAGTTTTCATTAAATCTGGATTTTTCAAGTCATTTTTCGTATGTATATCATAATTTTGGCTATTTTCATTTAGGAAATTTAAAGAAAACAGAATATCAAAAATGGAAAATTAGTTGTCGAGCTATTTTTGTAAGAATTTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTTGAAAATTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTACMAAAATAGGGCAAAAAGAGGTGTCTTCTAGTGATCGGCAAATAGCTGAAAACTAGGAATTTTTAAAAATTCTGTGTAATCAACGTTTTCAATCTTGGTCTGTTCAACACCCTTCAAAATTTTCAAAGTGATCGAAAACTTGGCAGTCAAGTTCCAGACGACTGAAAACGGCCATAATGACGGCAAATCAGCTGGAAATTTTTTTTAAATTTTTGATTGCCCGGTATTACGTATCATAGCTTAGATCATATTCATTTGGGAATTACTAAAAAATATATTGTTAAAAAATGGAGAATGAATTCCCGAGTTTTTATTGTTAGCATCTCGCAAGCCGAGAACTATTGATATCTTCAACTGAATCATAAGAAAATTTCATAACTTATGTATTTTGCTGAAAAAAAGCAATTTTCCAATTTTTGATCATTTCCTCTCATAGGAACACGCACGAGAATGATTGGTGGTGTTGCGTATATCATCCTCGCTCCTGAAAAATGAACCCACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>505 426 69</canonical_bands>
                <polymorphic_bands>931 69</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGTAAGTCAAGCCACCAC</pcr_primer_p1>
		<pcr_primer_p2>TTCCCAAATGAATATGATCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>421</pcr_amplicon_size>
		<canonical_amplicon>TTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTTGAAAATTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTACCAAAATAGGGCAAAAAGAGGTGTCTTCTAGTGATCGGCAAATAGCTGAAAACTAGGAATTTTTAAAAATTCTGTGTAATCAACGTTTTCAATCTTGGTCTGTTCAACACCCTTCAAAATTTTCAAAGTGATCGAAAACTTGGCAGTCAAGTTCCAGACGACTGAAAACGGCCATAATGACGGCAAATCAGCTGGAAATTTTTTTTAAATTTTTGATTGCCCGGTATTACGTATCATAGCTTAGATCATATTCATTTGGGAA</canonical_amplicon>
		<polymorphic_amplicon>TTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTTGAAAATTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTACMAAAATAGGGCAAAAAGAGGTGTCTTCTAGTGATCGGCAAATAGCTGAAAACTAGGAATTTTTAAAAATTCTGTGTAATCAACGTTTTCAATCTTGGTCTGTTCAACACCCTTCAAAATTTTCAAAGTGATCGAAAACTTGGCAGTCAAGTTCCAGACGACTGAAAACGGCCATAATGACGGCAAATCAGCTGGAAATTTTTTTTAAATTTTTGATTGCCCGGTATTACGTATCATAGCTTAGATCATATTCATTTGGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24349</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>302891</contig_pos>
        <strand></strand>
        <context>caaaaagagg[T/C]gtcttctagt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGAAAGGTACCTTTCTTACGTTTTTAGTACCAAAATAGGGCAAAAAGAGG</left_flank>
        <right_flank>GTCTTCTAGTGATCGGCAAATAGCTGAAAACTAGGAATTTTTAAAAATTC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAACATCAAAAAATACCTGAGTTATCATCCGTAGTAAACAAAACTATTGAGGACGACGGGCTTTGAGACGAATAACTGATAAGGGCACAAATTTAGAAGCTTTGAAGGATCAAAGTTGAAGGTTCTAGAATAAAAGAGTAGTCGGTGAGGTAGCACTAAATTCAGAATAGTGAGTTTTGGAGAGTTTTCATTAAATCTGGATTTTTCAAGTCATTTTTCGTATGTATATCATAATTTTGGCTATTTTCATTTAGGAAATTTAAAGAAAACAGAATATCAAAAATGGAAAATTAGTTGTCGAGCTATTTTTGTAAGAATTTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTTGAAAATTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTACCAAAATAGGGCAAAAAGAGGTGTCTTCTAGTGATCGGCAAATAGCTGAAAACTAGGAATTTTTAAAAATTCTGTGTAATCAACGTTTTCAATCTTGGTCTGTTCAACACCCTTCAAAATTTTCAAAGTGATCGAAAACTTGGCAGTCAAGTTCCAGACGACTGAAAACGGCCATAATGACGGCAAATCAGCTGGAAATTTTTTTTAAATTTTTGATTGCCCGGTATTACGTATCATAGCTTAGATCATATTCATTTGGGAATTACTAAAAAATATATTGTTAAAAAATGGAGAATGAATTCCCGAGTTTTTATTGTTAGCATCTCGCAAGCCGAGAACTATTGATATCTTCAACTGAATCATAAGAAAATTTCATAACTTATGTATTTTGCTGAAAAAAAGCAATTTTCCAATTTTTGATCATTTCCTCTCATAGGAACACGCACGAGAATGATTGGTGGTGTTGCGTATATCATCCTCGCTCCTGAAAAATGAACCCACCAATTTTCGGACACACCCACA</canonical>
            <polymorphic>CAAACATCAAAAAATACCTGAGTTATCATCCGTAGTAAACAAAACTATTGAGGACGACGGGCTTTGAGACGAATAACTGATAAGGGCACAAATTTAGAAGCTTTGAAGGATCAAAGTTGAAGGTTCTAGAATAAAAGAGTAGTCGGTGAGGTAGCACTAAATTCAGAATAGTGAGTTTTGGAGAGTTTTCATTAAATCTGGATTTTTCAAGTCATTTTTCGTATGTATATCATAATTTTGGCTATTTTCATTTAGGAAATTTAAAGAAAACAGAATATCAAAAATGGAAAATTAGTTGTCGAGCTATTTTTGTAAGAATTTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTTGAAAATTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTACCAAAATAGGGCAAAAAGAGGYGTCTTCTAGTGATCGGCAAATAGCTGAAAACTAGGAATTTTTAAAAATTCTGTGTAATCAACGTTTTCAATCTTGGTCTGTTCAACACCCTTCAAAATTTTCAAAGTGATCGAAAACTTGGCAGTCAAGTTCCAGACGACTGAAAACGGCCATAATGACGGCAAATCAGCTGGAAATTTTTTTTAAATTTTTGATTGCCCGGTATTACGTATCATAGCTTAGATCATATTCATTTGGGAATTACTAAAAAATATATTGTTAAAAAATGGAGAATGAATTCCCGAGTTTTTATTGTTAGCATCTCGCAAGCCGAGAACTATTGATATCTTCAACTGAATCATAAGAAAATTTCATAACTTATGTATTTTGCTGAAAAAAAGCAATTTTCCAATTTTTGATCATTTCCTCTCATAGGAACACGCACGAGAATGATTGGTGGTGTTGCGTATATCATCCTCGCTCCTGAAAAATGAACCCACCAATTTTCGGACACACCCACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>311 162 161 88 60 43 37 33 21 17 15 14 10 8 4 4 3 3 2 2 2</canonical_bands>
                <polymorphic_bands>311 171 162 88 60 43 37 33 21 17 15 14 8 4 4 3 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGTAAGTCAAGCCACCAC</pcr_primer_p1>
		<pcr_primer_p2>TTCCCAAATGAATATGATCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>421</pcr_amplicon_size>
		<canonical_amplicon>TTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTTGAAAATTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTACCAAAATAGGGCAAAAAGAGGTGTCTTCTAGTGATCGGCAAATAGCTGAAAACTAGGAATTTTTAAAAATTCTGTGTAATCAACGTTTTCAATCTTGGTCTGTTCAACACCCTTCAAAATTTTCAAAGTGATCGAAAACTTGGCAGTCAAGTTCCAGACGACTGAAAACGGCCATAATGACGGCAAATCAGCTGGAAATTTTTTTTAAATTTTTGATTGCCCGGTATTACGTATCATAGCTTAGATCATATTCATTTGGGAA</canonical_amplicon>
		<polymorphic_amplicon>TTTGTAAGTCAAGCCACCACACCGCAAAAAATTAAAACTATACAATTTAAAAAAATCAGACTTAGATTGTATATTTCGCAATTACAGAACTTTTTGAAAATTCCTAGTTTTTCAGCTATTAGTCGATTTCTGAAAGGTACCTTTCTTACGTTTTTAGTACCAAAATAGGGCAAAAAGAGGYGTCTTCTAGTGATCGGCAAATAGCTGAAAACTAGGAATTTTTAAAAATTCTGTGTAATCAACGTTTTCAATCTTGGTCTGTTCAACACCCTTCAAAATTTTCAAAGTGATCGAAAACTTGGCAGTCAAGTTCCAGACGACTGAAAACGGCCATAATGACGGCAAATCAGCTGGAAATTTTTTTTAAATTTTTGATTGCCCGGTATTACGTATCATAGCTTAGATCATATTCATTTGGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24350</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>304814</contig_pos>
        <strand>+</strand>
        <context>TTTCTTTTCA[A/G]CCAAAATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTCCTCCATTTTATCTATTCCAACATTCTGACTCTTGCTTTCTTTTCA</left_flank>
        <right_flank>CCAAAATTTTAGCCAGATAGATGATGATGTACAAACATCACCAGAAATCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCCAATTCCATCTATCACGCCTACCAAAAAAACCTTTTCGGGGAGGAAATTGGAATTTATACTTGGAATATACCAACATCATCGTTGAAATCAGATAAGGGAAACGGAAGGAAAAATAATCATATTTTATCAAACAAATCCCCTCCAGTGGATTCCTAAACCCGGTACTTCTCTACTAGCATTAGCCTTTTTTTGCAAGACCGAATATGTGTTTTTTCTTCATTCTATGGTTCTTTTTTGCCGTTTTCCCAATCCTTTCTCACTTTTTTGGGATGATGGGAGCAGTTTCCAAGAGATACTTAAATATTTTTTTGCTTCTATTATTGCAACCAAAACAAAAGGACTTTTAACCGAGAGTCATAATCCGGAGAGACCTTTTTGTGGCTGAGAACCCCTTTTCTTCGCAATCCCAAAACGCAAAATGATTGTTTTCACTTACTTCTCCAAAGTCCTCCATTTTATCTATTCCAACATTCTGACTCTTGCTTTCTTTTCAACCAAAATTTTAGCCAGATAGATGATGATGTACAAACATCACCAGAAATCTATCAACATATTCTATTAATTTCTAAATGATCCTCTTTTCTTTTGAAATATGGATGCACTTCATAGAGAAAAGAGCAAAAAGCAATGAAGAAAGATAGGAGAGCACCCCACCAGCACGAGGAGGAGCACGGGCACAAAAAAGTTATTTCGTGTCATGAAAAAAGAAAGCAATGTTATTTTTAATGGGTCGTTCAACACGTTGAACACAAAACACGACTACTATCGACATCTTGTCAAAAACCGAGCATATCCTCGCGCCACCAGAGATCAATCCGAGATTTTCATGATTTTCGGAACCACAGACTGAGAGAAAATTTACGATCGTCATGTCTAGGAGGATGATCACTATGGTGAGATTAGATATGATAATTTGCCAGTTTTATTTGATATATGAGGAGTTCCATAAAAGAATCTTGAAACTTGAAAAAACTTTTGGGAATTTTTTTCAAAT</canonical>
            <polymorphic>ATTTCCAATTCCATCTATCACGCCTACCAAAAAAACCTTTTCGGGGAGGAAATTGGAATTTATACTTGGAATATACCAACATCATCGTTGAAATCAGATAAGGGAAACGGAAGGAAAAATAATCATATTTTATCAAACAAATCCCCTCCAGTGGATTCCTAAACCCGGTACTTCTCTACTAGCATTAGCCTTTTTTTGCAAGACCGAATATGTGTTTTTTCTTCATTCTATGGTTCTTTTTTGCCGTTTTCCCAATCCTTTCTCACTTTTTTGGGATGATGGGAGCAGTTTCCAAGAGATACTTAAATATTTTTTTGCTTCTATTATTGCAACCAAAACAAAAGGACTTTTAACCGAGAGTCATAATCCGGAGAGACCTTTTTGTGGCTGAGAACCCCTTTTCTTCGCAATCCCAAAACGCAAAATGATTGTTTTCACTTACTTCTCCAAAGTCCTCCATTTTATCTATTCCAACATTCTGACTCTTGCTTTCTTTTCARCCAAAATTTTAGCCAGATAGATGATGATGTACAAACATCACCAGAAATCTATCAACATATTCTATTAATTTCTAAATGATCCTCTTTTCTTTTGAAATATGGATGCACTTCATAGAGAAAAGAGCAAAAAGCAATGAAGAAAGATAGGAGAGCACCCCACCAGCACGAGGAGGAGCACGGGCACAAAAAAGTTATTTCGTGTCATGAAAAAAGAAAGCAATGTTATTTTTAATGGGTCGTTCAACACGTTGAACACAAAACACGACTACTATCGACATCTTGTCAAAAACCGAGCATATCCTCGCGCCACCAGAGATCAATCCGAGATTTTCATGATTTTCGGAACCACAGACTGAGAGAAAATTTACGATCGTCATGTCTAGGAGGATGATCACTATGGTGAGATTAGATATGATAATTTGCCAGTTTTATTTGATATATGAGGAGTTCCATAAAAGAATCTTGAAACTTGAAAAAACTTTTGGGAATTTTTTTCAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTTTTAACCGAGAGTCATAATC</pcr_primer_p1>
		<pcr_primer_p2>TCAAAAGAAAAGAGGATCATTTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GACTTTTAACCGAGAGTCATAATCCGGAGAGACCTTTTTGTGGCTGAGAACCCCTTTTCTTCGCAATCCCAAAACGCAAAATGATTGTTTTCACTTACTTCTCCAAAGTCCTCCATTTTATCTATTCCAACATTCTGACTCTTGCTTTCTTTTCAACCAAAATTTTAGCCAGATAGATGATGATGTACAAACATCACCAGAAATCTATCAACATATTCTATTAATTTCTAAATGATCCTCTTTTCTTTTGA</canonical_amplicon>
		<polymorphic_amplicon>GACTTTTAACCGAGAGTCATAATCCGGAGAGACCTTTTTGTGGCTGAGAACCCCTTTTCTTCGCAATCCCAAAACGCAAAATGATTGTTTTCACTTACTTCTCCAAAGTCCTCCATTTTATCTATTCCAACATTCTGACTCTTGCTTTCTTTTCARCCAAAATTTTAGCCAGATAGATGATGATGTACAAACATCACCAGAAATCTATCAACATATTCTATTAATTTCTAAATGATCCTCTTTTCTTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24351</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>318339</contig_pos>
        <strand>+</strand>
        <context>ATTTTGTCTT[C/T]AAGTAAATTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGCTGCTCAAATTCGCTTCCTAAAAACAGAAATACTTACATTTTGTCTT</left_flank>
        <right_flank>AAGTAAATTATTATTCATATTGCAGTAAAATTCCAACTGCAGACAGATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAGCTTATTGCAGATACTAGCGATGATGATACCAAAAGTGAACGCTCTTCTCAAACACGAAGAGGTGGTGGTTGCCATGCAACTGGCGAATTTGGAGGAGTACGAGGAACTGGTTGAAATTGCCGCCAAACATGGAAGTGTCGATCCTCGAAAAAAATAAGTTTCTAGATTTTTTTGTTCTGTTGCTTTGCCTTTTTTTGAATTAGAAGCTTTTTAATTGTAATTTTAAAACTTTTTCAAACTAATGTAAACAAGTTTGTAGACTTTTCTTTTTTCATGAGATTGTTTGGAGCTTTCTCTTGAACTTGAATAAAAAAACTTCCGCCGCACTGTCAGGTTCATCTGATTGTTTTGAAATAGGTTATTTCAATCCAGTGAAGTTCAGTTTGTTTTCTATTTTTTGTGTACACTATCTTTTATGGCGGTTCGAAGTAGTCTACCAGAATGTTGCTGCTCAAATTCGCTTCCTAAAAACAGAAATACTTACATTTTGTCTTTAAGTAAATTATTATTCATATTGCAGTAAAATTCCAACTGCAGACAGATTTTTTTTCATTAGAGCTTTCTTTTCTTGTGCCCCTCCCGATTTTCAAATAGTGCGAATTGGTGTGACGGTGTTTGCAGATTTTGCATACCGTATACCAGAACTAAAATAAGTTTTGCGTTATTGTATTAGGTTGGCGGGAAAGTCTTTGTCACTCTGTTTGTTTAATCACTGTTCTCGTATATGGAGGCTGTGTATGATATCGACTCTAGTGAATAACAAGGTGATAAGAACCTTCCATATAAACAAGTCCCCATTTCCTTCCCTGCTCCTCATCTGTAATTGAAACGATATGTTTGTTCCCACTGCTATTCACATCAGACATGTTTTGATTTACCTCTTCCTATCTCACACCACGATGAAGGATTCTCACACCACGATGAAGGATTCTTTCTTGAAGAATGTGTACAACACACATGCCCCTCACTACAATACTATTCGCAATTGGTTCCAT</canonical>
            <polymorphic>ATCAGCTTATTGCAGATACTAGCGATGATGATACCAAAAGTGAACGCTCTTCTCAAACACGAAGAGGTGGTGGTTGCCATGCAACTGGCGAATTTGGAGGAGTACGAGGAACTGGTTGAAATTGCCGCCAAACATGGAAGTGTCGATCCTCGAAAAAAATAAGTTTCTAGATTTTTTTGTTCTGTTGCTTTGCCTTTTTTTGAATTAGAAGCTTTTTAATTGTAATTTTAAAACTTTTTCAAACTAATGTAAACAAGTTTGTAGACTTTTCTTTTTTCATGAGATTGTTTGGAGCTTTCTCTTGAACTTGAATAAAAAAACTTCCGCCGCACTGTCAGGTTCATCTGATTGTTTTGAAATAGGTTATTTCAATCCAGTGAAGTTCAGTTTGTTTTCTATTTTTTGTGTACACTATCTTTTATGGCGGTTCGAAGTAGTCTACCAGAATGTTGCTGCTCAAATTCGCTTCCTAAAAACAGAAATACTTACATTTTGTCTTYAAGTAAATTATTATTCATATTGCAGTAAAATTCCAACTGCAGACAGATTTTTTTTCATTAGAGCTTTCTTTTCTTGTGCCCCTCCCGATTTTCAAATAGTGCGAATTGGTGTGACGGTGTTTGCAGATTTTGCATACCGTATACCAGAACTAAAATAAGTTTTGCGTTATTGTATTAGGTTGGCGGGAAAGTCTTTGTCACTCTGTTTGTTTAATCACTGTTCTCGTATATGGAGGCTGTGTATGATATCGACTCTAGTGAATAACAAGGTGATAAGAACCTTCCATATAAACAAGTCCCCATTTCCTTCCCTGCTCCTCATCTGTAATTGAAACGATATGTTTGTTCCCACTGCTATTCACATCAGACATGTTTTGATTTACCTCTTCCTATCTCACACCACGATGAAGGATTCTCACACCACGATGAAGGATTCTTTCTTGAAGAATGTGTACAACACACATGCCCCTCACTACAATACTATTCGCAATTGGTTCCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>289 271 216 212 12</canonical_bands>
                <polymorphic_bands>483 289 216 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCAGGTTCATCTGATTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>CACAAGAAAAGAAAGCTCTAATG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GTCAGGTTCATCTGATTGTTTTGAAATAGGTTATTTCAATCCAGTGAAGTTCAGTTTGTTTTCTATTTTTTGTGTACACTATCTTTTATGGCGGTTCGAAGTAGTCTACCAGAATGTTGCTGCTCAAATTCGCTTCCTAAAAACAGAAATACTTACATTTTGTCTTTAAGTAAATTATTATTCATATTGCAGTAAAATTCCAACTGCAGACAGATTTTTTTTCATTAGAGCTTTCTTTTCTTGTG</canonical_amplicon>
		<polymorphic_amplicon>GTCAGGTTCATCTGATTGTTTTGAAATAGGTTATTTCAATCCAGTGAAGTTCAGTTTGTTTTCTATTTTTTGTGTACACTATCTTTTATGGCGGTTCGAAGTAGTCTACCAGAATGTTGCTGCTCAAATTCGCTTCCTAAAAACAGAAATACTTACATTTTGTCTTYAAGTAAATTATTATTCATATTGCAGTAAAATTCCAACTGCAGACAGATTTTTTTTCATTAGAGCTTTCTTTTCTTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24352</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>318387</contig_pos>
        <strand>+</strand>
        <context>TGCAGACAGA[C/G]TTTTTTTCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTAAGTAAATTATTATTCATATTGCAGTAAAATTCCAACTGCAGACAGA</left_flank>
        <right_flank>TTTTTTTCATTAGAGCTTTCTTTTCTTGTGCCCCTCCCGATTTTCAAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCTCAAACACGAAGAGGTGGTGGTTGCCATGCAACTGGCGAATTTGGAGGAGTACGAGGAACTGGTTGAAATTGCCGCCAAACATGGAAGTGTCGATCCTCGAAAAAAATAAGTTTCTAGATTTTTTTGTTCTGTTGCTTTGCCTTTTTTTGAATTAGAAGCTTTTTAATTGTAATTTTAAAACTTTTTCAAACTAATGTAAACAAGTTTGTAGACTTTTCTTTTTTCATGAGATTGTTTGGAGCTTTCTCTTGAACTTGAATAAAAAAACTTCCGCCGCACTGTCAGGTTCATCTGATTGTTTTGAAATAGGTTATTTCAATCCAGTGAAGTTCAGTTTGTTTTCTATTTTTTGTGTACACTATCTTTTATGGCGGTTCGAAGTAGTCTACCAGAATGTTGCTGCTCAAATTCGCTTCCTAAAAACAGAAATACTTACATTTTGTCTTTAAGTAAATTATTATTCATATTGCAGTAAAATTCCAACTGCAGACAGATTTTTTTTCATTAGAGCTTTCTTTTCTTGTGCCCCTCCCGATTTTCAAATAGTGCGAATTGGTGTGACGGTGTTTGCAGATTTTGCATACCGTATACCAGAACTAAAATAAGTTTTGCGTTATTGTATTAGGTTGGCGGGAAAGTCTTTGTCACTCTGTTTGTTTAATCACTGTTCTCGTATATGGAGGCTGTGTATGATATCGACTCTAGTGAATAACAAGGTGATAAGAACCTTCCATATAAACAAGTCCCCATTTCCTTCCCTGCTCCTCATCTGTAATTGAAACGATATGTTTGTTCCCACTGCTATTCACATCAGACATGTTTTGATTTACCTCTTCCTATCTCACACCACGATGAAGGATTCTCACACCACGATGAAGGATTCTTTCTTGAAGAATGTGTACAACACACATGCCCCTCACTACAATACTATTCGCAATTGGTTCCATCGTTTCGAAAAAGATGACTTCTCGCTCGATGAAAAGGATCGCTCTGGG</canonical>
            <polymorphic>CTTCTCAAACACGAAGAGGTGGTGGTTGCCATGCAACTGGCGAATTTGGAGGAGTACGAGGAACTGGTTGAAATTGCCGCCAAACATGGAAGTGTCGATCCTCGAAAAAAATAAGTTTCTAGATTTTTTTGTTCTGTTGCTTTGCCTTTTTTTGAATTAGAAGCTTTTTAATTGTAATTTTAAAACTTTTTCAAACTAATGTAAACAAGTTTGTAGACTTTTCTTTTTTCATGAGATTGTTTGGAGCTTTCTCTTGAACTTGAATAAAAAAACTTCCGCCGCACTGTCAGGTTCATCTGATTGTTTTGAAATAGGTTATTTCAATCCAGTGAAGTTCAGTTTGTTTTCTATTTTTTGTGTACACTATCTTTTATGGCGGTTCGAAGTAGTCTACCAGAATGTTGCTGCTCAAATTCGCTTCCTAAAAACAGAAATACTTACATTTTGTCTTTAAGTAAATTATTATTCATATTGCAGTAAAATTCCAACTGCAGACAGASTTTTTTTCATTAGAGCTTTCTTTTCTTGTGCCCCTCCCGATTTTCAAATAGTGCGAATTGGTGTGACGGTGTTTGCAGATTTTGCATACCGTATACCAGAACTAAAATAAGTTTTGCGTTATTGTATTAGGTTGGCGGGAAAGTCTTTGTCACTCTGTTTGTTTAATCACTGTTCTCGTATATGGAGGCTGTGTATGATATCGACTCTAGTGAATAACAAGGTGATAAGAACCTTCCATATAAACAAGTCCCCATTTCCTTCCCTGCTCCTCATCTGTAATTGAAACGATATGTTTGTTCCCACTGCTATTCACATCAGACATGTTTTGATTTACCTCTTCCTATCTCACACCACGATGAAGGATTCTCACACCACGATGAAGGATTCTTTCTTGAAGAATGTGTACAACACACATGCCCCTCACTACAATACTATTCGCAATTGGTTCCATCGTTTCGAAAAAGATGACTTCTCGCTCGATGAAAAGGATCGCTCTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTGAAGTTCAGTTTGTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>GTCACACCAATTCGCACTAT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CAGTGAAGTTCAGTTTGTTTTCTATTTTTTGTGTACACTATCTTTTATGGCGGTTCGAAGTAGTCTACCAGAATGTTGCTGCTCAAATTCGCTTCCTAAAAACAGAAATACTTACATTTTGTCTTTAAGTAAATTATTATTCATATTGCAGTAAAATTCCAACTGCAGACAGATTTTTTTTCATTAGAGCTTTCTTTTCTTGTGCCCCTCCCGATTTTCAAATAGTGCGAATTGGTGTGAC</canonical_amplicon>
		<polymorphic_amplicon>CAGTGAAGTTCAGTTTGTTTTCTATTTTTTGTGTACACTATCTTTTATGGCGGTTCGAAGTAGTCTACCAGAATGTTGCTGCTCAAATTCGCTTCCTAAAAACAGAAATACTTACATTTTGTCTTTAAGTAAATTATTATTCATATTGCAGTAAAATTCCAACTGCAGACAGASTTTTTTTCATTAGAGCTTTCTTTTCTTGTGCCCCTCCCGATTTTCAAATAGTGCGAATTGGTGTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24353</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>392737</contig_pos>
        <strand></strand>
        <context>cctatttaag[T/C]gcaattatag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTACCAGGGACTGTCGAACAGAGAGCTTTCCAGAATTTTCCCTATTTAAG</left_flank>
        <right_flank>GCAATTATAGAATCGAGTATTGGCTTTCACGCAGAAATTCGAGGAACCCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGTTGTTCGCAGTTCCGAAAACATTGATCCAATCAGTAGCACGGGGTAATTGCGGTGGTGGATTCATTTTTCAGTACACAAGCGTCTGAAAAGAGATGCGAATTATCTAGAAAAAGAAGAAAACCCAAGAAAAATGCATGAAACATTTGAATCAGTCAATGTTTGTTTTAAATTCATACGCTGTTAGAACATCAGATGTAAATGAGAAAAATGGAGAGGGAAAAATAATGGTGAATCGCACTTATTTCATTTTTGTGAGAGTTCACACAATTTTCTCTTCTCTTATGTTTCGCTCTGTAGGTAACAAAAATGAAGGTGAGAGACTCAGACGACCTTCTGTTGGCGACGAAGAAAGTGATGATACGTCCATACCAGACATACTGTTGAAAAGAGGGACAGAAAATGGGTATGCATGGGAGCAAACACGTGTTAAGGAAAGAAGTCTGTTTACCAGGGACTGTCGAACAGAGAGCTTTCCAGAATTTTCCCTATTTAAGTGCAATTATAGAATCGAGTATTGGCTTTCACGCAGAAATTCGAGGAACCCAGATCTGAAAATATGGTGATCCACCGGAGTCTCATTCTTTCCTTTTTCCTCCTTTTATATTTATTTCAATCGGTTCTCATTCATTTTTTCGGCAATTTTTTTTGGTTCAGAAATGTTCCACTTTCCGGCTTGTTTAAAGCTTTTCAACACAAAAGTTGTCGAAAAGCAATCGTAATAAGAACAAAAACCGAAAAATTCTGGTTACGGTGGTTTTCGTTACTGGTATTATTGGTCACGCCCACAAGCTTTACTCTTCCACAGCTCAGATCGTTATGTGCCAGAATGATAAAGTCTCAGGAATTTTTCAATCGAGCAAAACTTTTCAACGTTTTCTTGGATTTATTTTCTCACAGGAATCGTTCTGAAAACCAAAATCCTCCCAAAAGAAAGATTCGATACGAATTTTTTTGTATTCGAAAAATATTTCTAGTCGAAGACTATCCTGATAGTA</canonical>
            <polymorphic>GAAGTTGTTCGCAGTTCCGAAAACATTGATCCAATCAGTAGCACGGGGTAATTGCGGTGGTGGATTCATTTTTCAGTACACAAGCGTCTGAAAAGAGATGCGAATTATCTAGAAAAAGAAGAAAACCCAAGAAAAATGCATGAAACATTTGAATCAGTCAATGTTTGTTTTAAATTCATACGCTGTTAGAACATCAGATGTAAATGAGAAAAATGGAGAGGGAAAAATAATGGTGAATCGCACTTATTTCATTTTTGTGAGAGTTCACACAATTTTCTCTTCTCTTATGTTTCGCTCTGTAGGTAACAAAAATGAAGGTGAGAGACTCAGACGACCTTCTGTTGGCGACGAAGAAAGTGATGATACGTCCATACCAGACATACTGTTGAAAAGAGGGACAGAAAATGGGTATGCATGGGAGCAAACACGTGTTAAGGAAAGAAGTCTGTTTACCAGGGACTGTCGAACAGAGAGCTTTCCAGAATTTTCCCTATTTAAGYGCAATTATAGAATCGAGTATTGGCTTTCACGCAGAAATTCGAGGAACCCAGATCTGAAAATATGGTGATCCACCGGAGTCTCATTCTTTCCTTTTTCCTCCTTTTATATTTATTTCAATCGGTTCTCATTCATTTTTTCGGCAATTTTTTTTGGTTCAGAAATGTTCCACTTTCCGGCTTGTTTAAAGCTTTTCAACACAAAAGTTGTCGAAAAGCAATCGTAATAAGAACAAAAACCGAAAAATTCTGGTTACGGTGGTTTTCGTTACTGGTATTATTGGTCACGCCCACAAGCTTTACTCTTCCACAGCTCAGATCGTTATGTGCCAGAATGATAAAGTCTCAGGAATTTTTCAATCGAGCAAAACTTTTCAACGTTTTCTTGGATTTATTTTCTCACAGGAATCGTTCTGAAAACCAAAATCCTCCCAAAAGAAAGATTCGATACGAATTTTTTTGTATTCGAAAAATATTTCTAGTCGAAGACTATCCTGATAGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>499 275 138 88</canonical_bands>
                <polymorphic_bands>587 275 138</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>155 101 97 73 70 68 60 51 43 39 38 29 28 26 19 18 17 17 16 8 7 6 5 4 3 2</canonical_bands>
                <polymorphic_bands>155 101 98 97 73 68 60 51 43 39 38 29 26 19 18 17 17 16 8 7 6 5 4 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGTGTTAAGGAAAGAAGTCTG</pcr_primer_p1>
		<pcr_primer_p2>GATTGAAAAATTCCTGAGACTTTA</pcr_primer_p2>
		<pcr_amplicon_size>433</pcr_amplicon_size>
		<canonical_amplicon>ACGTGTTAAGGAAAGAAGTCTGTTTACCAGGGACTGTCGAACAGAGAGCTTTCCAGAATTTTCCCTATTTAAGTGCAATTATAGAATCGAGTATTGGCTTTCACGCAGAAATTCGAGGAACCCAGATCTGAAAATATGGTGATCCACCGGAGTCTCATTCTTTCCTTTTTCCTCCTTTTATATTTATTTCAATCGGTTCTCATTCATTTTTTCGGCAATTTTTTTTGGTTCAGAAATGTTCCACTTTCCGGCTTGTTTAAAGCTTTTCAACACAAAAGTTGTCGAAAAGCAATCGTAATAAGAACAAAAACCGAAAAATTCTGGTTACGGTGGTTTTCGTTACTGGTATTATTGGTCACGCCCACAAGCTTTACTCTTCCACAGCTCAGATCGTTATGTGCCAGAATGATAAAGTCTCAGGAATTTTTCAATC</canonical_amplicon>
		<polymorphic_amplicon>ACGTGTTAAGGAAAGAAGTCTGTTTACCAGGGACTGTCGAACAGAGAGCTTTCCAGAATTTTCCCTATTTAAGYGCAATTATAGAATCGAGTATTGGCTTTCACGCAGAAATTCGAGGAACCCAGATCTGAAAATATGGTGATCCACCGGAGTCTCATTCTTTCCTTTTTCCTCCTTTTATATTTATTTCAATCGGTTCTCATTCATTTTTTCGGCAATTTTTTTTGGTTCAGAAATGTTCCACTTTCCGGCTTGTTTAAAGCTTTTCAACACAAAAGTTGTCGAAAAGCAATCGTAATAAGAACAAAAACCGAAAAATTCTGGTTACGGTGGTTTTCGTTACTGGTATTATTGGTCACGCCCACAAGCTTTACTCTTCCACAGCTCAGATCGTTATGTGCCAGAATGATAAAGTCTCAGGAATTTTTCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24354</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>411612</contig_pos>
        <strand>+</strand>
        <context>TCCAAAATTT[C/T]AATCTTCTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACTTCCATTAGAGAATTTTGTCATCATCTTTGAAGTTTTTCCAAAATTT</left_flank>
        <right_flank>AATCTTCTGAAAGTATGGAAATCTCATGTTCACTTTTTATTTGTCAGCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATATTACCTGATTAAATATATTTGATTTTAATGGAATTCTCTCATACAGAAGACTCGTGCCGTGTTGAGAAGTCGCAACGGAAACCACTCACTGGGAGGGGAAATGAGTTACTGAAATTTCGAAAAATACCAACAATCCAACCGAATGGTTTTACAGAGAAGGGGATTTCAAACAAGCACGATTTATGCAATTGTTTTCTCCTTTTATAAACTCAGCCATACTTTTGCAATCTGGCCGCAATTGCTGTATATTCTCTAATAGAAGAACATCCGAACCGTTATCTTTTATTGGAATTATTTCGAGATTTGTGAGAGATATCGAAAAATTGTCAACTGATGAAATATGGTGATAGTATGAAAAATAATTCATCAGTTGACAAATGTTTGATATCTTCTACAGGAATCAAAATAATTAAGCTTACATTTAAATTTGATCGTATGGGTAAACTTCCATTAGAGAATTTTGTCATCATCTTTGAAGTTTTTCCAAAATTTTAATCTTCTGAAAGTATGGAAATCTCATGTTCACTTTTTATTTGTCAGCTATAGTTTTTTTCGAGAATGGAGCCCAAGACCAGCCTTTTTAACACATTTGAACTTCTGACTAATGTATTGAAATGATAGTACCGACGGAGATACACAACAACCTACTGCGACAGTTGGAAAAGACGTTATTGGTATCAATGTTGGCATCAAACCACTGTTCGAATCTCTGCAGAGTTCACAACTTTTTATAAAGCACAGTAATTTCTATGGTTGAAAAATAAGAAACATATCAGTTAAGACACGTTCTCTGTAGAACTCAACTTCAGGCCTATTATCCACTGTACAGAAAAATTAAAAATTGTTTTTTCTGGCTGGTTTTTCATATATTGCATGTTTATGGATTTCTAAGGTATATGAGATATTGTTTGTCCCGACATGTCCTGGCAACAAAAATTCGACCAAAATCGACCCTCTCCGATTTTGTTCAAATTTTCACCAGATGTAATTTTT</canonical>
            <polymorphic>AAAAATATTACCTGATTAAATATATTTGATTTTAATGGAATTCTCTCATACAGAAGACTCGTGCCGTGTTGAGAAGTCGCAACGGAAACCACTCACTGGGAGGGGAAATGAGTTACTGAAATTTCGAAAAATACCAACAATCCAACCGAATGGTTTTACAGAGAAGGGGATTTCAAACAAGCACGATTTATGCAATTGTTTTCTCCTTTTATAAACTCAGCCATACTTTTGCAATCTGGCCGCAATTGCTGTATATTCTCTAATAGAAGAACATCCGAACCGTTATCTTTTATTGGAATTATTTCGAGATTTGTGAGAGATATCGAAAAATTGTCAACTGATGAAATATGGTGATAGTATGAAAAATAATTCATCAGTTGACAAATGTTTGATATCTTCTACAGGAATCAAAATAATTAAGCTTACATTTAAATTTGATCGTATGGGTAAACTTCCATTAGAGAATTTTGTCATCATCTTTGAAGTTTTTCCAAAATTTYAATCTTCTGAAAGTATGGAAATCTCATGTTCACTTTTTATTTGTCAGCTATAGTTTTTTTCGAGAATGGAGCCCAAGACCAGCCTTTTTAACACATTTGAACTTCTGACTAATGTATTGAAATGATAGTACCGACGGAGATACACAACAACCTACTGCGACAGTTGGAAAAGACGTTATTGGTATCAATGTTGGCATCAAACCACTGTTCGAATCTCTGCAGAGTTCACAACTTTTTATAAAGCACAGTAATTTCTATGGTTGAAAAATAAGAAACATATCAGTTAAGACACGTTCTCTGTAGAACTCAACTTCAGGCCTATTATCCACTGTACAGAAAAATTAAAAATTGTTTTTTCTGGCTGGTTTTTCATATATTGCATGTTTATGGATTTCTAAGGTATATGAGATATTGTTTGTCCCGACATGTCCTGGCAACAAAAATTCGACCAAAATCGACCCTCTCCGATTTTGTTCAAATTTTCACCAGATGTAATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>385 196 158 89 70 58 16 16 12</canonical_bands>
                <polymorphic_bands>385 196 159 158 58 16 16 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCCATACTTTTGCAATCTG</pcr_primer_p1>
		<pcr_primer_p2>AAAAACTATAGCTGACAAATAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>340</pcr_amplicon_size>
		<canonical_amplicon>AGCCATACTTTTGCAATCTGGCCGCAATTGCTGTATATTCTCTAATAGAAGAACATCCGAACCGTTATCTTTTATTGGAATTATTTCGAGATTTGTGAGAGATATCGAAAAATTGTCAACTGATGAAATATGGTGATAGTATGAAAAATAATTCATCAGTTGACAAATGTTTGATATCTTCTACAGGAATCAAAATAATTAAGCTTACATTTAAATTTGATCGTATGGGTAAACTTCCATTAGAGAATTTTGTCATCATCTTTGAAGTTTTTCCAAAATTTTAATCTTCTGAAAGTATGGAAATCTCATGTTCACTTTTTATTTGTCAGCTATAGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>AGCCATACTTTTGCAATCTGGCCGCAATTGCTGTATATTCTCTAATAGAAGAACATCCGAACCGTTATCTTTTATTGGAATTATTTCGAGATTTGTGAGAGATATCGAAAAATTGTCAACTGATGAAATATGGTGATAGTATGAAAAATAATTCATCAGTTGACAAATGTTTGATATCTTCTACAGGAATCAAAATAATTAAGCTTACATTTAAATTTGATCGTATGGGTAAACTTCCATTAGAGAATTTTGTCATCATCTTTGAAGTTTTTCCAAAATTTYAATCTTCTGAAAGTATGGAAATCTCATGTTCACTTTTTATTTGTCAGCTATAGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24355</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>451274</contig_pos>
        <strand>+</strand>
        <context>GGACTGTCTC[C/T]TTTTTTTAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTTTGTTATCAGTGGAAATACAGATAGATGATTCGAGTGGACTGTCTC</left_flank>
        <right_flank>TTTTTTTAAAGAAAAAGGCAGCCTTTGATTCCGACGACAATGATTTTGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATTCATCATAATATCACTAATACTTGACAAAATTTTCAGTTGACAAAATGTTGAAAGCTTCCACAAGAATCGAGATAACTACTTTCAAAGTCGACGGTTTGGACAGGTTTTTATTAGCGGAAACGCGGTATTTTGAATTAAAATTTTTGCTAGTACTGGAAGTACGATTACAGTATTCTTTAAAGTACCAGAGGCCTATTGAAAATTCAAAAATAGGTGCAAATGCACAAGTTGAGACCACAAAAATAGCCCTTCTTCATGTGTAAAACAAGCACAAATTGCATCCCTTTTTGTTACCTACGCAGAGAGAAAACAAAAGAACAAATCGGATGAGAGATAGACCAAGTGAGAAAATGAAATCTTCCCCCGTCGAGGTTGAGCACCTTTGAGCACTGACGTCAGGGCAGCGATACCAGAGGTTTCGATTTGCGTGACTTTTTGAACGTCTTTTTGTTATCAGTGGAAATACAGATAGATGATTCGAGTGGACTGTCTCTTTTTTTTAAAGAAAAAGGCAGCCTTTGATTCCGACGACAATGATTTTGGGTCTTTTGAAAAGCTAGGCGTTCGCTTAGTTCAAAGAAAGTTTTTTACAGAAAGAAAAATAATTTGCGCTCTTTGAAGTGGTGCGCGTTGAGGTTAAAGATCTGAAGAAGAAAAAGAACAAAGGTGTTGGAAAAAAGTCGTCAGAATTCAGGAATTTCAGATCTTTTGATTTCGCTACCAGGAAACAAAAAATCGTATTTTGAAAAGAGCAAGAATCGGATACAGAAGTGAAAAAAAGAGAAAAAAATTGGACTGAATTCAGTTAATACTTGCAAATATCTTCTAGTTTTTGATGAATAGATGTAAAATTGAAAAATATCAAAAATCACTTGACTCGACGTTTTTGAAGCCATTATTGTGATTTGTAGCAGTTTAAAAGAATGAAGATTAAACTTTCAAGAAAAGATTACGAAAAATAATAAAACCTAGATTTTTGAAATTGTCTATCATC</canonical>
            <polymorphic>ATTATTCATCATAATATCACTAATACTTGACAAAATTTTCAGTTGACAAAATGTTGAAAGCTTCCACAAGAATCGAGATAACTACTTTCAAAGTCGACGGTTTGGACAGGTTTTTATTAGCGGAAACGCGGTATTTTGAATTAAAATTTTTGCTAGTACTGGAAGTACGATTACAGTATTCTTTAAAGTACCAGAGGCCTATTGAAAATTCAAAAATAGGTGCAAATGCACAAGTTGAGACCACAAAAATAGCCCTTCTTCATGTGTAAAACAAGCACAAATTGCATCCCTTTTTGTTACCTACGCAGAGAGAAAACAAAAGAACAAATCGGATGAGAGATAGACCAAGTGAGAAAATGAAATCTTCCCCCGTCGAGGTTGAGCACCTTTGAGCACTGACGTCAGGGCAGCGATACCAGAGGTTTCGATTTGCGTGACTTTTTGAACGTCTTTTTGTTATCAGTGGAAATACAGATAGATGATTCGAGTGGACTGTCTCYTTTTTTTAAAGAAAAAGGCAGCCTTTGATTCCGACGACAATGATTTTGGGTCTTTTGAAAAGCTAGGCGTTCGCTTAGTTCAAAGAAAGTTTTTTACAGAAAGAAAAATAATTTGCGCTCTTTGAAGTGGTGCGCGTTGAGGTTAAAGATCTGAAGAAGAAAAAGAACAAAGGTGTTGGAAAAAAGTCGTCAGAATTCAGGAATTTCAGATCTTTTGATTTCGCTACCAGGAAACAAAAAATCGTATTTTGAAAAGAGCAAGAATCGGATACAGAAGTGAAAAAAAGAGAAAAAAATTGGACTGAATTCAGTTAATACTTGCAAATATCTTCTAGTTTTTGATGAATAGATGTAAAATTGAAAAATATCAAAAATCACTTGACTCGACGTTTTTGAAGCCATTATTGTGATTTGTAGCAGTTTAAAAGAATGAAGATTAAACTTTCAAGAAAAGATTACGAAAAATAATAAAACCTAGATTTTTGAAATTGTCTATCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTTTGAACGTCTTTTTGTTA</pcr_primer_p1>
		<pcr_primer_p2>AACACCTTTGTTCTTTTTCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ACTTTTTGAACGTCTTTTTGTTATCAGTGGAAATACAGATAGATGATTCGAGTGGACTGTCTCTTTTTTTTAAAGAAAAAGGCAGCCTTTGATTCCGACGACAATGATTTTGGGTCTTTTGAAAAGCTAGGCGTTCGCTTAGTTCAAAGAAAGTTTTTTACAGAAAGAAAAATAATTTGCGCTCTTTGAAGTGGTGCGCGTTGAGGTTAAAGATCTGAAGAAGAAAAAGAACAAAGGTGTT</canonical_amplicon>
		<polymorphic_amplicon>ACTTTTTGAACGTCTTTTTGTTATCAGTGGAAATACAGATAGATGATTCGAGTGGACTGTCTCYTTTTTTTAAAGAAAAAGGCAGCCTTTGATTCCGACGACAATGATTTTGGGTCTTTTGAAAAGCTAGGCGTTCGCTTAGTTCAAAGAAAGTTTTTTACAGAAAGAAAAATAATTTGCGCTCTTTGAAGTGGTGCGCGTTGAGGTTAAAGATCTGAAGAAGAAAAAGAACAAAGGTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24356</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>482669</contig_pos>
        <strand>+</strand>
        <context>TTCAGTAATT[G/T]TTTAGATAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCCAAAATGTGTTTTTGAAATCACAAATTTCCATACTTTTTCAGTAATT</left_flank>
        <right_flank>TTTAGATAAAAAATGACCGGGAAAATAGAAGGGCTCCTATATGAACAGAT</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATTCAAAAATTTAAATTTCCTTTTCCCCACTCTCAACATGATTGCATTTTCTTTAAAGGAACATTTGAAAAGGAAGGACATTGAACAGCTCTTCAATGGAATCAAGCTCGAAGAGAAAACAAAACACTGAATAGTTTTTTATTCTTCTCTTCTTTCCGGTTTCTCAAACGGGCCGGACTCATTTAAGATGTTAAAGGAAAAAAAGGAAGAAGAAGAAGAGAAAAAAAAAGAAAAGTAAATTTTTGAATTCGTCGGTTTTCACACATTTTACTTTTTCAATACTGTGTTTATAATCATTTGAGCTTATGGGTTCGATTAATTATTATTTGAAATTAAGTAGTGACGTTGTACTAAAGATGTTTATAGTTATACATGTTTTGAAATCCATTCTTTTTTCCAATATACAGTAAAACCTGTATTAGAAGAGCCCTTTTATAAAAGGGCCTTCTCCAAAATGTGTTTTTGAAATCACAAATTTCCATACTTTTTCAGTAATTGTTTAGATAAAAAATGACCGGGAAAATAGAAGGGCTCCTATATGAACAGATGACTATGACAAACAGAAGAATGCACAATCCTCTGCAACGCAACATTGAACGCATCTGAAAAATCGATGGTTTGATTAGTAACGAAAATTCAATAGACGTTCGAAAAATCAGTTCATTTTTAAGAGAAACACACCGTCAGGTCAAACGGGGAATGTGCTTTTGGTAAAAAACAGTTGATGTGACAAAGTCCACAAATTAGGTTTTCTCCCGAGAAAACTTTGTTATTTGGGACTGTGATTAGAACAATTGAACTTCACGGAGCAGAAATTTCAAAACCATCCAATTTATCGGAATATATGATTACTATACTACCGTAAAACCTATATTGAAAGAGTCCCTTCAATAGAAGGGCCCCTCTAATAGAAGGGCCCACCGAGAGAGGCTCGGAAAAATAGTAGGGTCCGCGCTAAACATGACCGCATTCAAAATATGTCTTGAAATTGAAACAAT</canonical>
            <polymorphic>ACATTCAAAAATTTAAATTTCCTTTTCCCCACTCTCAACATGATTGCATTTTCTTTAAAGGAACATTTGAAAAGGAAGGACATTGAACAGCTCTTCAATGGAATCAAGCTCGAAGAGAAAACAAAACACTGAATAGTTTTTTATTCTTCTCTTCTTTCCGGTTTCTCAAACGGGCCGGACTCATTTAAGATGTTAAAGGAAAAAAAGGAAGAAGAAGAAGAGAAAAAAAAAGAAAAGTAAATTTTTGAATTCGTCGGTTTTCACACATTTTACTTTTTCAATACTGTGTTTATAATCATTTGAGCTTATGGGTTCGATTAATTATTATTTGAAATTAAGTAGTGACGTTGTACTAAAGATGTTTATAGTTATACATGTTTTGAAATCCATTCTTTTTTCCAATATACAGTAAAACCTGTATTAGAAGAGCCCTTTTATAAAAGGGCCTTCTCCAAAATGTGTTTTTGAAATCACAAATTTCCATACTTTTTCAGTAATTKTTTAGATAAAAAATGACCGGGAAAATAGAAGGGCTCCTATATGAACAGATGACTATGACAAACAGAAGAATGCACAATCCTCTGCAACGCAACATTGAACGCATCTGAAAAATCGATGGTTTGATTAGTAACGAAAATTCAATAGACGTTCGAAAAATCAGTTCATTTTTAAGAGAAACACACCGTCAGGTCAAACGGGGAATGTGCTTTTGGTAAAAAACAGTTGATGTGACAAAGTCCACAAATTAGGTTTTCTCCCGAGAAAACTTTGTTATTTGGGACTGTGATTAGAACAATTGAACTTCACGGAGCAGAAATTTCAAAACCATCCAATTTATCGGAATATATGATTACTATACTACCGTAAAACCTATATTGAAAGAGTCCCTTCAATAGAAGGGCCCCTCTAATAGAAGGGCCCACCGAGAGAGGCTCGGAAAAATAGTAGGGTCCGCGCTAAACATGACCGCATTCAAAATATGTCTTGAAATTGAAACAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAATTAAGTAGTGACGTTGT</pcr_primer_p1>
		<pcr_primer_p2>GCATTCTTCTGTTTGTCATAGTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAATTAAGTAGTGACGTTGTACTAAAGATGTTTATAGTTATACATGTTTTGAAATCCATTCTTTTTTCCAATATACAGTAAAACCTGTATTAGAAGAGCCCTTTTATAAAAGGGCCTTCTCCAAAATGTGTTTTTGAAATCACAAATTTCCATACTTTTTCAGTAATTGTTTAGATAAAAAATGACCGGGAAAATAGAAGGGCTCCTATATGAACAGATGACTATGACAAACAGAAGAATGC</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAATTAAGTAGTGACGTTGTACTAAAGATGTTTATAGTTATACATGTTTTGAAATCCATTCTTTTTTCCAATATACAGTAAAACCTGTATTAGAAGAGCCCTTTTATAAAAGGGCCTTCTCCAAAATGTGTTTTTGAAATCACAAATTTCCATACTTTTTCAGTAATTKTTTAGATAAAAAATGACCGGGAAAATAGAAGGGCTCCTATATGAACAGATGACTATGACAAACAGAAGAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24357</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>482829</contig_pos>
        <strand>+</strand>
        <context>TCGAAAAATC[A/T]GTTCATTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATCGATGGTTTGATTAGTAACGAAAATTCAATAGACGTTCGAAAAATC</left_flank>
        <right_flank>GTTCATTTTTAAGAGAAACACACCGTCAGGTCAAACGGGGAATGTGCTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTCTCAAACGGGCCGGACTCATTTAAGATGTTAAAGGAAAAAAAGGAAGAAGAAGAAGAGAAAAAAAAAGAAAAGTAAATTTTTGAATTCGTCGGTTTTCACACATTTTACTTTTTCAATACTGTGTTTATAATCATTTGAGCTTATGGGTTCGATTAATTATTATTTGAAATTAAGTAGTGACGTTGTACTAAAGATGTTTATAGTTATACATGTTTTGAAATCCATTCTTTTTTCCAATATACAGTAAAACCTGTATTAGAAGAGCCCTTTTATAAAAGGGCCTTCTCCAAAATGTGTTTTTGAAATCACAAATTTCCATACTTTTTCAGTAATTGTTTAGATAAAAAATGACCGGGAAAATAGAAGGGCTCCTATATGAACAGATGACTATGACAAACAGAAGAATGCACAATCCTCTGCAACGCAACATTGAACGCATCTGAAAAATCGATGGTTTGATTAGTAACGAAAATTCAATAGACGTTCGAAAAATCAGTTCATTTTTAAGAGAAACACACCGTCAGGTCAAACGGGGAATGTGCTTTTGGTAAAAAACAGTTGATGTGACAAAGTCCACAAATTAGGTTTTCTCCCGAGAAAACTTTGTTATTTGGGACTGTGATTAGAACAATTGAACTTCACGGAGCAGAAATTTCAAAACCATCCAATTTATCGGAATATATGATTACTATACTACCGTAAAACCTATATTGAAAGAGTCCCTTCAATAGAAGGGCCCCTCTAATAGAAGGGCCCACCGAGAGAGGCTCGGAAAAATAGTAGGGTCCGCGCTAAACATGACCGCATTCAAAATATGTCTTGAAATTGAAACAATTTCAAACGCCTTCAGTGAAAATTATTTAGGAAATTACTCAATTTAACAACATTTTGTTGAAAACAATTTTTTTTTTTGAAAAACCTGCTCAATTTTGATCAAATTGACAGATTTTCATTAGTTTCGAACGAAATTTAGTATAATTTTTTGATAAAAAATT</canonical>
            <polymorphic>GTTTCTCAAACGGGCCGGACTCATTTAAGATGTTAAAGGAAAAAAAGGAAGAAGAAGAAGAGAAAAAAAAAGAAAAGTAAATTTTTGAATTCGTCGGTTTTCACACATTTTACTTTTTCAATACTGTGTTTATAATCATTTGAGCTTATGGGTTCGATTAATTATTATTTGAAATTAAGTAGTGACGTTGTACTAAAGATGTTTATAGTTATACATGTTTTGAAATCCATTCTTTTTTCCAATATACAGTAAAACCTGTATTAGAAGAGCCCTTTTATAAAAGGGCCTTCTCCAAAATGTGTTTTTGAAATCACAAATTTCCATACTTTTTCAGTAATTGTTTAGATAAAAAATGACCGGGAAAATAGAAGGGCTCCTATATGAACAGATGACTATGACAAACAGAAGAATGCACAATCCTCTGCAACGCAACATTGAACGCATCTGAAAAATCGATGGTTTGATTAGTAACGAAAATTCAATAGACGTTCGAAAAATCWGTTCATTTTTAAGAGAAACACACCGTCAGGTCAAACGGGGAATGTGCTTTTGGTAAAAAACAGTTGATGTGACAAAGTCCACAAATTAGGTTTTCTCCCGAGAAAACTTTGTTATTTGGGACTGTGATTAGAACAATTGAACTTCACGGAGCAGAAATTTCAAAACCATCCAATTTATCGGAATATATGATTACTATACTACCGTAAAACCTATATTGAAAGAGTCCCTTCAATAGAAGGGCCCCTCTAATAGAAGGGCCCACCGAGAGAGGCTCGGAAAAATAGTAGGGTCCGCGCTAAACATGACCGCATTCAAAATATGTCTTGAAATTGAAACAATTTCAAACGCCTTCAGTGAAAATTATTTAGGAAATTACTCAATTTAACAACATTTTGTTGAAAACAATTTTTTTTTTTGAAAAACCTGCTCAATTTTGATCAAATTGACAGATTTTCATTAGTTTCGAACGAAATTTAGTATAATTTTTTGATAAAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAACAGATGACTATGACAAACA</pcr_primer_p1>
		<pcr_primer_p2>CTAATCACAGTCCCAAATAACAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAACAGATGACTATGACAAACAGAAGAATGCACAATCCTCTGCAACGCAACATTGAACGCATCTGAAAAATCGATGGTTTGATTAGTAACGAAAATTCAATAGACGTTCGAAAAATCAGTTCATTTTTAAGAGAAACACACCGTCAGGTCAAACGGGGAATGTGCTTTTGGTAAAAAACAGTTGATGTGACAAAGTCCACAAATTAGGTTTTCTCCCGAGAAAACTTTGTTATTTGGGACTGTGATTAG</canonical_amplicon>
		<polymorphic_amplicon>TGAACAGATGACTATGACAAACAGAAGAATGCACAATCCTCTGCAACGCAACATTGAACGCATCTGAAAAATCGATGGTTTGATTAGTAACGAAAATTCAATAGACGTTCGAAAAATCWGTTCATTTTTAAGAGAAACACACCGTCAGGTCAAACGGGGAATGTGCTTTTGGTAAAAAACAGTTGATGTGACAAAGTCCACAAATTAGGTTTTCTCCCGAGAAAACTTTGTTATTTGGGACTGTGATTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24358</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>482911</contig_pos>
        <strand>+</strand>
        <context>ACAAAGTCCA[A/C]AAATTAGGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAAACGGGGAATGTGCTTTTGGTAAAAAACAGTTGATGTGACAAAGTCCA</left_flank>
        <right_flank>AAATTAGGTTTTCTCCCGAGAAAACTTTGTTATTTGGGACTGTGATTAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGAATTCGTCGGTTTTCACACATTTTACTTTTTCAATACTGTGTTTATAATCATTTGAGCTTATGGGTTCGATTAATTATTATTTGAAATTAAGTAGTGACGTTGTACTAAAGATGTTTATAGTTATACATGTTTTGAAATCCATTCTTTTTTCCAATATACAGTAAAACCTGTATTAGAAGAGCCCTTTTATAAAAGGGCCTTCTCCAAAATGTGTTTTTGAAATCACAAATTTCCATACTTTTTCAGTAATTGTTTAGATAAAAAATGACCGGGAAAATAGAAGGGCTCCTATATGAACAGATGACTATGACAAACAGAAGAATGCACAATCCTCTGCAACGCAACATTGAACGCATCTGAAAAATCGATGGTTTGATTAGTAACGAAAATTCAATAGACGTTCGAAAAATCAGTTCATTTTTAAGAGAAACACACCGTCAGGTCAAACGGGGAATGTGCTTTTGGTAAAAAACAGTTGATGTGACAAAGTCCACAAATTAGGTTTTCTCCCGAGAAAACTTTGTTATTTGGGACTGTGATTAGAACAATTGAACTTCACGGAGCAGAAATTTCAAAACCATCCAATTTATCGGAATATATGATTACTATACTACCGTAAAACCTATATTGAAAGAGTCCCTTCAATAGAAGGGCCCCTCTAATAGAAGGGCCCACCGAGAGAGGCTCGGAAAAATAGTAGGGTCCGCGCTAAACATGACCGCATTCAAAATATGTCTTGAAATTGAAACAATTTCAAACGCCTTCAGTGAAAATTATTTAGGAAATTACTCAATTTAACAACATTTTGTTGAAAACAATTTTTTTTTTTGAAAAACCTGCTCAATTTTGATCAAATTGACAGATTTTCATTAGTTTCGAACGAAATTTAGTATAATTTTTTGATAAAAAATTTCGGAAAAAAATGGCCGGAAAAATAGAAGGGCCCCTGTAAAAGAAGGGCTCTCCGGTGGTAAATAGGAAAAATAGAAGGGCT</canonical>
            <polymorphic>TTTTGAATTCGTCGGTTTTCACACATTTTACTTTTTCAATACTGTGTTTATAATCATTTGAGCTTATGGGTTCGATTAATTATTATTTGAAATTAAGTAGTGACGTTGTACTAAAGATGTTTATAGTTATACATGTTTTGAAATCCATTCTTTTTTCCAATATACAGTAAAACCTGTATTAGAAGAGCCCTTTTATAAAAGGGCCTTCTCCAAAATGTGTTTTTGAAATCACAAATTTCCATACTTTTTCAGTAATTGTTTAGATAAAAAATGACCGGGAAAATAGAAGGGCTCCTATATGAACAGATGACTATGACAAACAGAAGAATGCACAATCCTCTGCAACGCAACATTGAACGCATCTGAAAAATCGATGGTTTGATTAGTAACGAAAATTCAATAGACGTTCGAAAAATCAGTTCATTTTTAAGAGAAACACACCGTCAGGTCAAACGGGGAATGTGCTTTTGGTAAAAAACAGTTGATGTGACAAAGTCCAMAAATTAGGTTTTCTCCCGAGAAAACTTTGTTATTTGGGACTGTGATTAGAACAATTGAACTTCACGGAGCAGAAATTTCAAAACCATCCAATTTATCGGAATATATGATTACTATACTACCGTAAAACCTATATTGAAAGAGTCCCTTCAATAGAAGGGCCCCTCTAATAGAAGGGCCCACCGAGAGAGGCTCGGAAAAATAGTAGGGTCCGCGCTAAACATGACCGCATTCAAAATATGTCTTGAAATTGAAACAATTTCAAACGCCTTCAGTGAAAATTATTTAGGAAATTACTCAATTTAACAACATTTTGTTGAAAACAATTTTTTTTTTTGAAAAACCTGCTCAATTTTGATCAAATTGACAGATTTTCATTAGTTTCGAACGAAATTTAGTATAATTTTTTGATAAAAAATTTCGGAAAAAAATGGCCGGAAAAATAGAAGGGCCCCTGTAAAAGAAGGGCTCTCCGGTGGTAAATAGGAAAAATAGAAGGGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>201 117 116 106 101 95 56 45 25 24 24 23 21 20 12 10 2 2</canonical_bands>
                <polymorphic_bands>201 117 116 106 101 95 56 55 25 24 24 23 21 20 12 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTCAATAGACGTTCGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GGGACTCTTTCAATATAGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AATTCAATAGACGTTCGAAAAATCAGTTCATTTTTAAGAGAAACACACCGTCAGGTCAAACGGGGAATGTGCTTTTGGTAAAAAACAGTTGATGTGACAAAGTCCACAAATTAGGTTTTCTCCCGAGAAAACTTTGTTATTTGGGACTGTGATTAGAACAATTGAACTTCACGGAGCAGAAATTTCAAAACCATCCAATTTATCGGAATATATGATTACTATACTACCGTAAAACCTATATTGAAAGAGTCCC</canonical_amplicon>
		<polymorphic_amplicon>AATTCAATAGACGTTCGAAAAATCAGTTCATTTTTAAGAGAAACACACCGTCAGGTCAAACGGGGAATGTGCTTTTGGTAAAAAACAGTTGATGTGACAAAGTCCAMAAATTAGGTTTTCTCCCGAGAAAACTTTGTTATTTGGGACTGTGATTAGAACAATTGAACTTCACGGAGCAGAAATTTCAAAACCATCCAATTTATCGGAATATATGATTACTATACTACCGTAAAACCTATATTGAAAGAGTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24359</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>483015</contig_pos>
        <strand>+</strand>
        <context>TATCGGAATA[A/T]ATGATTACTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTGAACTTCACGGAGCAGAAATTTCAAAACCATCCAATTTATCGGAATA</left_flank>
        <right_flank>ATGATTACTATACTACCGTAAAACCTATATTGAAAGAGTCCCTTCAATAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGTACTAAAGATGTTTATAGTTATACATGTTTTGAAATCCATTCTTTTTTCCAATATACAGTAAAACCTGTATTAGAAGAGCCCTTTTATAAAAGGGCCTTCTCCAAAATGTGTTTTTGAAATCACAAATTTCCATACTTTTTCAGTAATTGTTTAGATAAAAAATGACCGGGAAAATAGAAGGGCTCCTATATGAACAGATGACTATGACAAACAGAAGAATGCACAATCCTCTGCAACGCAACATTGAACGCATCTGAAAAATCGATGGTTTGATTAGTAACGAAAATTCAATAGACGTTCGAAAAATCAGTTCATTTTTAAGAGAAACACACCGTCAGGTCAAACGGGGAATGTGCTTTTGGTAAAAAACAGTTGATGTGACAAAGTCCACAAATTAGGTTTTCTCCCGAGAAAACTTTGTTATTTGGGACTGTGATTAGAACAATTGAACTTCACGGAGCAGAAATTTCAAAACCATCCAATTTATCGGAATATATGATTACTATACTACCGTAAAACCTATATTGAAAGAGTCCCTTCAATAGAAGGGCCCCTCTAATAGAAGGGCCCACCGAGAGAGGCTCGGAAAAATAGTAGGGTCCGCGCTAAACATGACCGCATTCAAAATATGTCTTGAAATTGAAACAATTTCAAACGCCTTCAGTGAAAATTATTTAGGAAATTACTCAATTTAACAACATTTTGTTGAAAACAATTTTTTTTTTTGAAAAACCTGCTCAATTTTGATCAAATTGACAGATTTTCATTAGTTTCGAACGAAATTTAGTATAATTTTTTGATAAAAAATTTCGGAAAAAAATGGCCGGAAAAATAGAAGGGCCCCTGTAAAAGAAGGGCTCTCCGGTGGTAAATAGGAAAAATAGAAGGGCTGGCCCTTCTAATACAGGTTTTACGGTAGATATTTGAAGATAGAAGATTTGTTGTTATAATTTTTATATTTCCGAATTTTTTTTTGGACATCAAAATCCAAAACA</canonical>
            <polymorphic>GTTGTACTAAAGATGTTTATAGTTATACATGTTTTGAAATCCATTCTTTTTTCCAATATACAGTAAAACCTGTATTAGAAGAGCCCTTTTATAAAAGGGCCTTCTCCAAAATGTGTTTTTGAAATCACAAATTTCCATACTTTTTCAGTAATTGTTTAGATAAAAAATGACCGGGAAAATAGAAGGGCTCCTATATGAACAGATGACTATGACAAACAGAAGAATGCACAATCCTCTGCAACGCAACATTGAACGCATCTGAAAAATCGATGGTTTGATTAGTAACGAAAATTCAATAGACGTTCGAAAAATCAGTTCATTTTTAAGAGAAACACACCGTCAGGTCAAACGGGGAATGTGCTTTTGGTAAAAAACAGTTGATGTGACAAAGTCCACAAATTAGGTTTTCTCCCGAGAAAACTTTGTTATTTGGGACTGTGATTAGAACAATTGAACTTCACGGAGCAGAAATTTCAAAACCATCCAATTTATCGGAATAWATGATTACTATACTACCGTAAAACCTATATTGAAAGAGTCCCTTCAATAGAAGGGCCCCTCTAATAGAAGGGCCCACCGAGAGAGGCTCGGAAAAATAGTAGGGTCCGCGCTAAACATGACCGCATTCAAAATATGTCTTGAAATTGAAACAATTTCAAACGCCTTCAGTGAAAATTATTTAGGAAATTACTCAATTTAACAACATTTTGTTGAAAACAATTTTTTTTTTTGAAAAACCTGCTCAATTTTGATCAAATTGACAGATTTTCATTAGTTTCGAACGAAATTTAGTATAATTTTTTGATAAAAAATTTCGGAAAAAAATGGCCGGAAAAATAGAAGGGCCCCTGTAAAAGAAGGGCTCTCCGGTGGTAAATAGGAAAAATAGAAGGGCTGGCCCTTCTAATACAGGTTTTACGGTAGATATTTGAAGATAGAAGATTTGTTGTTATAATTTTTATATTTCCGAATTTTTTTTTGGACATCAAAATCCAAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACAGTTGATGTGACAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TACTATTTTTCCGAGCCTCTC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>AAAAACAGTTGATGTGACAAAGTCCACAAATTAGGTTTTCTCCCGAGAAAACTTTGTTATTTGGGACTGTGATTAGAACAATTGAACTTCACGGAGCAGAAATTTCAAAACCATCCAATTTATCGGAATATATGATTACTATACTACCGTAAAACCTATATTGAAAGAGTCCCTTCAATAGAAGGGCCCCTCTAATAGAAGGGCCCACCGAGAGAGGCTCGGAAAAATAGTA</canonical_amplicon>
		<polymorphic_amplicon>AAAAACAGTTGATGTGACAAAGTCCACAAATTAGGTTTTCTCCCGAGAAAACTTTGTTATTTGGGACTGTGATTAGAACAATTGAACTTCACGGAGCAGAAATTTCAAAACCATCCAATTTATCGGAATAWATGATTACTATACTACCGTAAAACCTATATTGAAAGAGTCCCTTCAATAGAAGGGCCCCTCTAATAGAAGGGCCCACCGAGAGAGGCTCGGAAAAATAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24360</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>483151</contig_pos>
        <strand>+</strand>
        <context>TTCAAAATAT[G/T]TCTTgaaatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCTCGGAAAAATAGTAGGGTCCGCGCTAAACATGACCGCATTCAAAATAT</left_flank>
        <right_flank>TCTTGAAATTGAAACAATTTCAAACGCCTTCAGTGAAAATTATTTAGGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATACTTTTTCAGTAATTGTTTAGATAAAAAATGACCGGGAAAATAGAAGGGCTCCTATATGAACAGATGACTATGACAAACAGAAGAATGCACAATCCTCTGCAACGCAACATTGAACGCATCTGAAAAATCGATGGTTTGATTAGTAACGAAAATTCAATAGACGTTCGAAAAATCAGTTCATTTTTAAGAGAAACACACCGTCAGGTCAAACGGGGAATGTGCTTTTGGTAAAAAACAGTTGATGTGACAAAGTCCACAAATTAGGTTTTCTCCCGAGAAAACTTTGTTATTTGGGACTGTGATTAGAACAATTGAACTTCACGGAGCAGAAATTTCAAAACCATCCAATTTATCGGAATATATGATTACTATACTACCGTAAAACCTATATTGAAAGAGTCCCTTCAATAGAAGGGCCCCTCTAATAGAAGGGCCCACCGAGAGAGGCTCGGAAAAATAGTAGGGTCCGCGCTAAACATGACCGCATTCAAAATATGTCTTGAAATTGAAACAATTTCAAACGCCTTCAGTGAAAATTATTTAGGAAATTACTCAATTTAACAACATTTTGTTGAAAACAATTTTTTTTTTTGAAAAACCTGCTCAATTTTGATCAAATTGACAGATTTTCATTAGTTTCGAACGAAATTTAGTATAATTTTTTGATAAAAAATTTCGGAAAAAAATGGCCGGAAAAATAGAAGGGCCCCTGTAAAAGAAGGGCTCTCCGGTGGTAAATAGGAAAAATAGAAGGGCTGGCCCTTCTAATACAGGTTTTACGGTAGATATTTGAAGATAGAAGATTTGTTGTTATAATTTTTATATTTCCGAATTTTTTTTTGGACATCAAAATCCAAAACATCGAAATGGTAAACGACCCAGTTAAAATCTAATTCCGAAAAATTCCGGAATTTTAGAGAATATTCCGAAATTCTTAAAGCTGGGGTTACGGATATTCCAAACTTTTGGAAAATCTTGATTCCACCCACTTCTGTTT</canonical>
            <polymorphic>ATACTTTTTCAGTAATTGTTTAGATAAAAAATGACCGGGAAAATAGAAGGGCTCCTATATGAACAGATGACTATGACAAACAGAAGAATGCACAATCCTCTGCAACGCAACATTGAACGCATCTGAAAAATCGATGGTTTGATTAGTAACGAAAATTCAATAGACGTTCGAAAAATCAGTTCATTTTTAAGAGAAACACACCGTCAGGTCAAACGGGGAATGTGCTTTTGGTAAAAAACAGTTGATGTGACAAAGTCCACAAATTAGGTTTTCTCCCGAGAAAACTTTGTTATTTGGGACTGTGATTAGAACAATTGAACTTCACGGAGCAGAAATTTCAAAACCATCCAATTTATCGGAATATATGATTACTATACTACCGTAAAACCTATATTGAAAGAGTCCCTTCAATAGAAGGGCCCCTCTAATAGAAGGGCCCACCGAGAGAGGCTCGGAAAAATAGTAGGGTCCGCGCTAAACATGACCGCATTCAAAATATKTCTTGAAATTGAAACAATTTCAAACGCCTTCAGTGAAAATTATTTAGGAAATTACTCAATTTAACAACATTTTGTTGAAAACAATTTTTTTTTTTGAAAAACCTGCTCAATTTTGATCAAATTGACAGATTTTCATTAGTTTCGAACGAAATTTAGTATAATTTTTTGATAAAAAATTTCGGAAAAAAATGGCCGGAAAAATAGAAGGGCCCCTGTAAAAGAAGGGCTCTCCGGTGGTAAATAGGAAAAATAGAAGGGCTGGCCCTTCTAATACAGGTTTTACGGTAGATATTTGAAGATAGAAGATTTGTTGTTATAATTTTTATATTTCCGAATTTTTTTTTGGACATCAAAATCCAAAACATCGAAATGGTAAACGACCCAGTTAAAATCTAATTCCGAAAAATTCCGGAATTTTAGAGAATATTCCGAAATTCTTAAAGCTGGGGTTACGGATATTCCAAACTTTTGGAAAATCTTGATTCCACCCACTTCTGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGCTCGGAAAAATAGTAGG</pcr_primer_p1>
		<pcr_primer_p2>GAGAGCCCTTCTTTTACAGG</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>AGGCTCGGAAAAATAGTAGGGTCCGCGCTAAACATGACCGCATTCAAAATATGTCTTGAAATTGAAACAATTTCAAACGCCTTCAGTGAAAATTATTTAGGAAATTACTCAATTTAACAACATTTTGTTGAAAACAATTTTTTTTTTTGAAAAACCTGCTCAATTTTGATCAAATTGACAGATTTTCATTAGTTTCGAACGAAATTTAGTATAATTTTTTGATAAAAAATTTCGGAAAAAAATGGCCGGAAAAATAGAAGGGCCCCTGTAAAAGAAGGGCTCTC</canonical_amplicon>
		<polymorphic_amplicon>AGGCTCGGAAAAATAGTAGGGTCCGCGCTAAACATGACCGCATTCAAAATATKTCTTGAAATTGAAACAATTTCAAACGCCTTCAGTGAAAATTATTTAGGAAATTACTCAATTTAACAACATTTTGTTGAAAACAATTTTTTTTTTTGAAAAACCTGCTCAATTTTGATCAAATTGACAGATTTTCATTAGTTTCGAACGAAATTTAGTATAATTTTTTGATAAAAAATTTCGGAAAAAAATGGCCGGAAAAATAGAAGGGCCCCTGTAAAAGAAGGGCTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24361</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>484609</contig_pos>
        <strand>+</strand>
        <context>CTTTGTCTAT[C/T]CATTTATCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAAAATATACATTACCAGAAAACAAAAATCGCCCATCCACTTTGTCTAT</left_flank>
        <right_flank>CATTTATCTTGAGTTAGACCACCAGAAGATATCTCAGGTGCTCCTATCAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATGTAGCCTTAGGGTGGAAAGGAACTCAGAATGAAGAAGAAAATAAGGAGAAAAATGGAGAGAAAGAAGAAAACAAAGTGTCCATAAAGACGAAGAACTGACAAAAAAATAGGTGTGAAGACGACGAGGAACATGAATTTCGGTGGTAGTGGAAGCAAAATTAATTTGGAAAAAATTAGGTGAAAACAGAATACCCCATTATATCAACTATACTTTTTTGGAGTATAGGAGAAAAGGCAAAATGATGGTGTTGCTGTTCCTAGTAGAGAAAGAAAACCCGAGAAGGAAGCTCATTTATTTTGACGCGTCTTTTGCAATTTTTCATTTTTCTTCTTGTCTCCTTCACTTTCTCAATTTTCCCCCTTCTGTTTTTGACATTTTATGAGTATAAGAAAAGACAACCGCTTGTTGGGAATAGTAAAATAAAGTGAAAATTAGTAGAGATTTGGAAAATATACATTACCAGAAAACAAAAATCGCCCATCCACTTTGTCTATCCATTTATCTTGAGTTAGACCACCAGAAGATATCTCAGGTGCTCCTATCATTTTTCGATCGATCACTGAGCCGCGTGTATTAACGGGTGAAGAGCACTCTTGACACCAGAGTGAGAAGAAAAAGAAGAAACCATGAATTACACATTTGAGAAGCACAGCGCAAAATTTTGGAATTTCAAAACTTATTGATGAGATTGAAGGGGCCCATACTCCGAGGGTACATCGAAAAAGGGTACATCACTCTTATAGGGTACATTGACTCAGAGGGTACATTGACTGATAGGGTACATCTGTGGAGGAGTCTGATAGGGTACATTTAAGCAACTCTCATAGGGTACATCGACGAAATACTCAAAGGGTACATCGAAAAAATCTGAAAGGGTACATTGGTCTGATTTCGCACAGTTTTCGAATGTTCGTAACTTAATGAGACGGACAAGTTTTATAACGAAGTTTTGGTCATTCATCGGATTATAAGCAACTTACTGATGCTCGGCGAGG</canonical>
            <polymorphic>AGATGTAGCCTTAGGGTGGAAAGGAACTCAGAATGAAGAAGAAAATAAGGAGAAAAATGGAGAGAAAGAAGAAAACAAAGTGTCCATAAAGACGAAGAACTGACAAAAAAATAGGTGTGAAGACGACGAGGAACATGAATTTCGGTGGTAGTGGAAGCAAAATTAATTTGGAAAAAATTAGGTGAAAACAGAATACCCCATTATATCAACTATACTTTTTTGGAGTATAGGAGAAAAGGCAAAATGATGGTGTTGCTGTTCCTAGTAGAGAAAGAAAACCCGAGAAGGAAGCTCATTTATTTTGACGCGTCTTTTGCAATTTTTCATTTTTCTTCTTGTCTCCTTCACTTTCTCAATTTTCCCCCTTCTGTTTTTGACATTTTATGAGTATAAGAAAAGACAACCGCTTGTTGGGAATAGTAAAATAAAGTGAAAATTAGTAGAGATTTGGAAAATATACATTACCAGAAAACAAAAATCGCCCATCCACTTTGTCTATYCATTTATCTTGAGTTAGACCACCAGAAGATATCTCAGGTGCTCCTATCATTTTTCGATCGATCACTGAGCCGCGTGTATTAACGGGTGAAGAGCACTCTTGACACCAGAGTGAGAAGAAAAAGAAGAAACCATGAATTACACATTTGAGAAGCACAGCGCAAAATTTTGGAATTTCAAAACTTATTGATGAGATTGAAGGGGCCCATACTCCGAGGGTACATCGAAAAAGGGTACATCACTCTTATAGGGTACATTGACTCAGAGGGTACATTGACTGATAGGGTACATCTGTGGAGGAGTCTGATAGGGTACATTTAAGCAACTCTCATAGGGTACATCGACGAAATACTCAAAGGGTACATCGAAAAAATCTGAAAGGGTACATTGGTCTGATTTCGCACAGTTTTCGAATGTTCGTAACTTAATGAGACGGACAAGTTTTATAACGAAGTTTTGGTCATTCATCGGATTATAAGCAACTTACTGATGCTCGGCGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTGTTGGGAATAGTAAAATAA</pcr_primer_p1>
		<pcr_primer_p2>TTCTCAAATGTGTAATTCATGGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GCTTGTTGGGAATAGTAAAATAAAGTGAAAATTAGTAGAGATTTGGAAAATATACATTACCAGAAAACAAAAATCGCCCATCCACTTTGTCTATCCATTTATCTTGAGTTAGACCACCAGAAGATATCTCAGGTGCTCCTATCATTTTTCGATCGATCACTGAGCCGCGTGTATTAACGGGTGAAGAGCACTCTTGACACCAGAGTGAGAAGAAAAAGAAGAAACCATGAATTACACATTTGAGAA</canonical_amplicon>
		<polymorphic_amplicon>GCTTGTTGGGAATAGTAAAATAAAGTGAAAATTAGTAGAGATTTGGAAAATATACATTACCAGAAAACAAAAATCGCCCATCCACTTTGTCTATYCATTTATCTTGAGTTAGACCACCAGAAGATATCTCAGGTGCTCCTATCATTTTTCGATCGATCACTGAGCCGCGTGTATTAACGGGTGAAGAGCACTCTTGACACCAGAGTGAGAAGAAAAAGAAGAAACCATGAATTACACATTTGAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24362</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>484913</contig_pos>
        <strand></strand>
        <context>ggaggagtct[G/C]atagggtaca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>ATTGACTCAGAGGGTACATTGACTGATAGGGTACATCTGTGGAGGAGTCT</left_flank>
        <right_flank>ATAGGGTACATTTAAGCAACTCTCATAGGGTACATCGACGAAATACTCAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGCGTCTTTTGCAATTTTTCATTTTTCTTCTTGTCTCCTTCACTTTCTCAATTTTCCCCCTTCTGTTTTTGACATTTTATGAGTATAAGAAAAGACAACCGCTTGTTGGGAATAGTAAAATAAAGTGAAAATTAGTAGAGATTTGGAAAATATACATTACCAGAAAACAAAAATCGCCCATCCACTTTGTCTATCCATTTATCTTGAGTTAGACCACCAGAAGATATCTCAGGTGCTCCTATCATTTTTCGATCGATCACTGAGCCGCGTGTATTAACGGGTGAAGAGCACTCTTGACACCAGAGTGAGAAGAAAAAGAAGAAACCATGAATTACACATTTGAGAAGCACAGCGCAAAATTTTGGAATTTCAAAACTTATTGATGAGATTGAAGGGGCCCATACTCCGAGGGTACATCGAAAAAGGGTACATCACTCTTATAGGGTACATTGACTCAGAGGGTACATTGACTGATAGGGTACATCTGTGGAGGAGTCTGATAGGGTACATTTAAGCAACTCTCATAGGGTACATCGACGAAATACTCAAAGGGTACATCGAAAAAATCTGAAAGGGTACATTGGTCTGATTTCGCACAGTTTTCGAATGTTCGTAACTTAATGAGACGGACAAGTTTTATAACGAAGTTTTGGTCATTCATCGGATTATAAGCAACTTACTGATGCTCGGCGAGGTTTTGCAACGTGCTCCTCCTCAATCTTGAATAGTACGCGCTCATTTCTCGATCACTCAGGAACGCTATTTCAAAACAATTTTAGTAATTTACCCGCATTCTGAAAGCTTGAGCAGCGAGCTACACTTTTTTTCTAGCCCAGGAAGATAAATAACTTCAAACAGATACAATGAAAGATACAATGTTCGTCCCTAAGTGATCGAGGAATGAGCGCTTACTATTCAAGATTGAGGAGGAGCACGTTGCAAAACCTCGCCGAGCATCAGTAAGTTGCTTATAATCCGATGAATGACCGAAACTTCGTT</canonical>
            <polymorphic>ACGCGTCTTTTGCAATTTTTCATTTTTCTTCTTGTCTCCTTCACTTTCTCAATTTTCCCCCTTCTGTTTTTGACATTTTATGAGTATAAGAAAAGACAACCGCTTGTTGGGAATAGTAAAATAAAGTGAAAATTAGTAGAGATTTGGAAAATATACATTACCAGAAAACAAAAATCGCCCATCCACTTTGTCTATCCATTTATCTTGAGTTAGACCACCAGAAGATATCTCAGGTGCTCCTATCATTTTTCGATCGATCACTGAGCCGCGTGTATTAACGGGTGAAGAGCACTCTTGACACCAGAGTGAGAAGAAAAAGAAGAAACCATGAATTACACATTTGAGAAGCACAGCGCAAAATTTTGGAATTTCAAAACTTATTGATGAGATTGAAGGGGCCCATACTCCGAGGGTACATCGAAAAAGGGTACATCACTCTTATAGGGTACATTGACTCAGAGGGTACATTGACTGATAGGGTACATCTGTGGAGGAGTCTSATAGGGTACATTTAAGCAACTCTCATAGGGTACATCGACGAAATACTCAAAGGGTACATCGAAAAAATCTGAAAGGGTACATTGGTCTGATTTCGCACAGTTTTCGAATGTTCGTAACTTAATGAGACGGACAAGTTTTATAACGAAGTTTTGGTCATTCATCGGATTATAAGCAACTTACTGATGCTCGGCGAGGTTTTGCAACGTGCTCCTCCTCAATCTTGAATAGTACGCGCTCATTTCTCGATCACTCAGGAACGCTATTTCAAAACAATTTTAGTAATTTACCCGCATTCTGAAAGCTTGAGCAGCGAGCTACACTTTTTTTCTAGCCCAGGAAGATAAATAACTTCAAACAGATACAATGAAAGATACAATGTTCGTCCCTAAGTGATCGAGGAATGAGCGCTTACTATTCAAGATTGAGGAGGAGCACGTTGCAAAACCTCGCCGAGCATCAGTAAGTTGCTTATAATCCGATGAATGACCGAAACTTCGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>408 181 133 76 71 50 41 22 18</canonical_bands>
                <polymorphic_bands>408 181 133 112 76 50 22 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAACTTATTGATGAGATTGAAG</pcr_primer_p1>
		<pcr_primer_p2>GTTACGAACATTCGAAAACTGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAAAACTTATTGATGAGATTGAAGGGGCCCATACTCCGAGGGTACATCGAAAAAGGGTACATCACTCTTATAGGGTACATTGACTCAGAGGGTACATTGACTGATAGGGTACATCTGTGGAGGAGTCTGATAGGGTACATTTAAGCAACTCTCATAGGGTACATCGACGAAATACTCAAAGGGTACATCGAAAAAATCTGAAAGGGTACATTGGTCTGATTTCGCACAGTTTTCGAATGTTCGTAAC</canonical_amplicon>
		<polymorphic_amplicon>CAAAACTTATTGATGAGATTGAAGGGGCCCATACTCCGAGGGTACATCGAAAAAGGGTACATCACTCTTATAGGGTACATTGACTCAGAGGGTACATTGACTGATAGGGTACATCTGTGGAGGAGTCTSATAGGGTACATTTAAGCAACTCTCATAGGGTACATCGACGAAATACTCAAAGGGTACATCGAAAAAATCTGAAAGGGTACATTGGTCTGATTTCGCACAGTTTTCGAATGTTCGTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24363</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>484939</contig_pos>
        <strand></strand>
        <context>gcaactctca[T/A]agggtacatc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TAGGGTACATCTGTGGAGGAGTCTGATAGGGTACATTTAAGCAACTCTCA</left_flank>
        <right_flank>AGGGTACATCGACGAAATACTCAAAGGGTACATCGAAAAAATCTGAAAGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCTTGTCTCCTTCACTTTCTCAATTTTCCCCCTTCTGTTTTTGACATTTTATGAGTATAAGAAAAGACAACCGCTTGTTGGGAATAGTAAAATAAAGTGAAAATTAGTAGAGATTTGGAAAATATACATTACCAGAAAACAAAAATCGCCCATCCACTTTGTCTATCCATTTATCTTGAGTTAGACCACCAGAAGATATCTCAGGTGCTCCTATCATTTTTCGATCGATCACTGAGCCGCGTGTATTAACGGGTGAAGAGCACTCTTGACACCAGAGTGAGAAGAAAAAGAAGAAACCATGAATTACACATTTGAGAAGCACAGCGCAAAATTTTGGAATTTCAAAACTTATTGATGAGATTGAAGGGGCCCATACTCCGAGGGTACATCGAAAAAGGGTACATCACTCTTATAGGGTACATTGACTCAGAGGGTACATTGACTGATAGGGTACATCTGTGGAGGAGTCTGATAGGGTACATTTAAGCAACTCTCATAGGGTACATCGACGAAATACTCAAAGGGTACATCGAAAAAATCTGAAAGGGTACATTGGTCTGATTTCGCACAGTTTTCGAATGTTCGTAACTTAATGAGACGGACAAGTTTTATAACGAAGTTTTGGTCATTCATCGGATTATAAGCAACTTACTGATGCTCGGCGAGGTTTTGCAACGTGCTCCTCCTCAATCTTGAATAGTACGCGCTCATTTCTCGATCACTCAGGAACGCTATTTCAAAACAATTTTAGTAATTTACCCGCATTCTGAAAGCTTGAGCAGCGAGCTACACTTTTTTTCTAGCCCAGGAAGATAAATAACTTCAAACAGATACAATGAAAGATACAATGTTCGTCCCTAAGTGATCGAGGAATGAGCGCTTACTATTCAAGATTGAGGAGGAGCACGTTGCAAAACCTCGCCGAGCATCAGTAAGTTGCTTATAATCCGATGAATGACCGAAACTTCGTTATAAAACTTGTCCGTCTCATTAAGTT</canonical>
            <polymorphic>TCTTCTTGTCTCCTTCACTTTCTCAATTTTCCCCCTTCTGTTTTTGACATTTTATGAGTATAAGAAAAGACAACCGCTTGTTGGGAATAGTAAAATAAAGTGAAAATTAGTAGAGATTTGGAAAATATACATTACCAGAAAACAAAAATCGCCCATCCACTTTGTCTATCCATTTATCTTGAGTTAGACCACCAGAAGATATCTCAGGTGCTCCTATCATTTTTCGATCGATCACTGAGCCGCGTGTATTAACGGGTGAAGAGCACTCTTGACACCAGAGTGAGAAGAAAAAGAAGAAACCATGAATTACACATTTGAGAAGCACAGCGCAAAATTTTGGAATTTCAAAACTTATTGATGAGATTGAAGGGGCCCATACTCCGAGGGTACATCGAAAAAGGGTACATCACTCTTATAGGGTACATTGACTCAGAGGGTACATTGACTGATAGGGTACATCTGTGGAGGAGTCTGATAGGGTACATTTAAGCAACTCTCAWAGGGTACATCGACGAAATACTCAAAGGGTACATCGAAAAAATCTGAAAGGGTACATTGGTCTGATTTCGCACAGTTTTCGAATGTTCGTAACTTAATGAGACGGACAAGTTTTATAACGAAGTTTTGGTCATTCATCGGATTATAAGCAACTTACTGATGCTCGGCGAGGTTTTGCAACGTGCTCCTCCTCAATCTTGAATAGTACGCGCTCATTTCTCGATCACTCAGGAACGCTATTTCAAAACAATTTTAGTAATTTACCCGCATTCTGAAAGCTTGAGCAGCGAGCTACACTTTTTTTCTAGCCCAGGAAGATAAATAACTTCAAACAGATACAATGAAAGATACAATGTTCGTCCCTAAGTGATCGAGGAATGAGCGCTTACTATTCAAGATTGAGGAGGAGCACGTTGCAAAACCTCGCCGAGCATCAGTAAGTTGCTTATAATCCGATGAATGACCGAAACTTCGTTATAAAACTTGTCCGTCTCATTAAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAACTTATTGATGAGATTGAAG</pcr_primer_p1>
		<pcr_primer_p2>GTTACGAACATTCGAAAACTGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAAAACTTATTGATGAGATTGAAGGGGCCCATACTCCGAGGGTACATCGAAAAAGGGTACATCACTCTTATAGGGTACATTGACTCAGAGGGTACATTGACTGATAGGGTACATCTGTGGAGGAGTCTGATAGGGTACATTTAAGCAACTCTCATAGGGTACATCGACGAAATACTCAAAGGGTACATCGAAAAAATCTGAAAGGGTACATTGGTCTGATTTCGCACAGTTTTCGAATGTTCGTAAC</canonical_amplicon>
		<polymorphic_amplicon>CAAAACTTATTGATGAGATTGAAGGGGCCCATACTCCGAGGGTACATCGAAAAAGGGTACATCACTCTTATAGGGTACATTGACTCAGAGGGTACATTGACTGATAGGGTACATCTGTGGAGGAGTCTGATAGGGTACATTTAAGCAACTCTCAWAGGGTACATCGACGAAATACTCAAAGGGTACATCGAAAAAATCTGAAAGGGTACATTGGTCTGATTTCGCACAGTTTTCGAATGTTCGTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24364</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>484961</contig_pos>
        <strand></strand>
        <context>acgaaatact[C/G]aaagggtaca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTGATAGGGTACATTTAAGCAACTCTCATAGGGTACATCGACGAAATACT</left_flank>
        <right_flank>AAAGGGTACATCGAAAAAATCTGAAAGGGTACATTGGTCTGATTTCGCAC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAATTTTCCCCCTTCTGTTTTTGACATTTTATGAGTATAAGAAAAGACAACCGCTTGTTGGGAATAGTAAAATAAAGTGAAAATTAGTAGAGATTTGGAAAATATACATTACCAGAAAACAAAAATCGCCCATCCACTTTGTCTATCCATTTATCTTGAGTTAGACCACCAGAAGATATCTCAGGTGCTCCTATCATTTTTCGATCGATCACTGAGCCGCGTGTATTAACGGGTGAAGAGCACTCTTGACACCAGAGTGAGAAGAAAAAGAAGAAACCATGAATTACACATTTGAGAAGCACAGCGCAAAATTTTGGAATTTCAAAACTTATTGATGAGATTGAAGGGGCCCATACTCCGAGGGTACATCGAAAAAGGGTACATCACTCTTATAGGGTACATTGACTCAGAGGGTACATTGACTGATAGGGTACATCTGTGGAGGAGTCTGATAGGGTACATTTAAGCAACTCTCATAGGGTACATCGACGAAATACTCAAAGGGTACATCGAAAAAATCTGAAAGGGTACATTGGTCTGATTTCGCACAGTTTTCGAATGTTCGTAACTTAATGAGACGGACAAGTTTTATAACGAAGTTTTGGTCATTCATCGGATTATAAGCAACTTACTGATGCTCGGCGAGGTTTTGCAACGTGCTCCTCCTCAATCTTGAATAGTACGCGCTCATTTCTCGATCACTCAGGAACGCTATTTCAAAACAATTTTAGTAATTTACCCGCATTCTGAAAGCTTGAGCAGCGAGCTACACTTTTTTTCTAGCCCAGGAAGATAAATAACTTCAAACAGATACAATGAAAGATACAATGTTCGTCCCTAAGTGATCGAGGAATGAGCGCTTACTATTCAAGATTGAGGAGGAGCACGTTGCAAAACCTCGCCGAGCATCAGTAAGTTGCTTATAATCCGATGAATGACCGAAACTTCGTTATAAAACTTGTCCGTCTCATTAAGTTACGAATATTCGAAAACTGTGCG</canonical>
            <polymorphic>TCAATTTTCCCCCTTCTGTTTTTGACATTTTATGAGTATAAGAAAAGACAACCGCTTGTTGGGAATAGTAAAATAAAGTGAAAATTAGTAGAGATTTGGAAAATATACATTACCAGAAAACAAAAATCGCCCATCCACTTTGTCTATCCATTTATCTTGAGTTAGACCACCAGAAGATATCTCAGGTGCTCCTATCATTTTTCGATCGATCACTGAGCCGCGTGTATTAACGGGTGAAGAGCACTCTTGACACCAGAGTGAGAAGAAAAAGAAGAAACCATGAATTACACATTTGAGAAGCACAGCGCAAAATTTTGGAATTTCAAAACTTATTGATGAGATTGAAGGGGCCCATACTCCGAGGGTACATCGAAAAAGGGTACATCACTCTTATAGGGTACATTGACTCAGAGGGTACATTGACTGATAGGGTACATCTGTGGAGGAGTCTGATAGGGTACATTTAAGCAACTCTCATAGGGTACATCGACGAAATACTSAAAGGGTACATCGAAAAAATCTGAAAGGGTACATTGGTCTGATTTCGCACAGTTTTCGAATGTTCGTAACTTAATGAGACGGACAAGTTTTATAACGAAGTTTTGGTCATTCATCGGATTATAAGCAACTTACTGATGCTCGGCGAGGTTTTGCAACGTGCTCCTCCTCAATCTTGAATAGTACGCGCTCATTTCTCGATCACTCAGGAACGCTATTTCAAAACAATTTTAGTAATTTACCCGCATTCTGAAAGCTTGAGCAGCGAGCTACACTTTTTTTCTAGCCCAGGAAGATAAATAACTTCAAACAGATACAATGAAAGATACAATGTTCGTCCCTAAGTGATCGAGGAATGAGCGCTTACTATTCAAGATTGAGGAGGAGCACGTTGCAAAACCTCGCCGAGCATCAGTAAGTTGCTTATAATCCGATGAATGACCGAAACTTCGTTATAAAACTTGTCCGTCTCATTAAGTTACGAATATTCGAAAACTGTGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAACTTATTGATGAGATTGAAG</pcr_primer_p1>
		<pcr_primer_p2>GTTACGAACATTCGAAAACTGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAAAACTTATTGATGAGATTGAAGGGGCCCATACTCCGAGGGTACATCGAAAAAGGGTACATCACTCTTATAGGGTACATTGACTCAGAGGGTACATTGACTGATAGGGTACATCTGTGGAGGAGTCTGATAGGGTACATTTAAGCAACTCTCATAGGGTACATCGACGAAATACTCAAAGGGTACATCGAAAAAATCTGAAAGGGTACATTGGTCTGATTTCGCACAGTTTTCGAATGTTCGTAAC</canonical_amplicon>
		<polymorphic_amplicon>CAAAACTTATTGATGAGATTGAAGGGGCCCATACTCCGAGGGTACATCGAAAAAGGGTACATCACTCTTATAGGGTACATTGACTCAGAGGGTACATTGACTGATAGGGTACATCTGTGGAGGAGTCTGATAGGGTACATTTAAGCAACTCTCATAGGGTACATCGACGAAATACTSAAAGGGTACATCGAAAAAATCTGAAAGGGTACATTGGTCTGATTTCGCACAGTTTTCGAATGTTCGTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24365</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>487122</contig_pos>
        <strand>+</strand>
        <context>TAAATCCGAC[C/T]GAACGGAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTGGGAGAATGAATCACCTTGAGGAAAGGAAATGAGCCATAAATCCGAC</left_flank>
        <right_flank>GAACGGAGAATTGGGAAAAGAGACGCCTGCTGGGAAGAATAGATGGAAAA</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCCTTAGCATACCATTAACCGAAAATAAGAAACTAGAAAAATAATGAGTACAAGACATATCCAGTATCATGCATAAATCTTGGAAAACGAGATGAGAGGCTAACCAGAGAAGGACCAAGTCGACTAAAACCAAACAAGTGCACAAATAAATGGTCATAAAGCTAAAAGTGAAGCGAGTCATAAAACAAGCGTCTTCTTTCTGGATGCAGATGGCTCCGATGGCCCGTGTCTCAGAACGCACGAACCTTTTGTGGGTGGGACCCCGAATTGAATGAGAAAAATGGAAACGAAAAGCGGAGGAAATACGGGAGGAAAAATTGAACGACAAAAGCTGACGGGATAGGAATCGTAACGAGAATTCGATGTGACTGACGAGTGACGGCTCGAAAATGGGTTGCGGGGAAACGGGAAGCCGAATGGAAGTGGAAAATGGTAGGATGAGCTGTTCTTGGGAGAATGAATCACCTTGAGGAAAGGAAATGAGCCATAAATCCGACCGAACGGAGAATTGGGAAAAGAGACGCCTGCTGGGAAGAATAGATGGAAAATTCGAAAATGGTCAATTCGGGATGGGAACCGGAATGAGAAGTGACGTGAAGTGCTCAATCAAGTGTTGCGTATAGTATATTTTTGAAACGAACGAAGATCTCAAATTTTTGAAGAAAAACTCGATGGGATACTGTAGGAAGTATGACTTAACAAATCTGTTATAAGTACCACTACTCCTCCTTCAACTTTTAGTCAATCTATCTCGTTCCACGGCTGTTTATATTTAAAAGCGGCCGGAAGACAAAACATTCATCATAATATCAAAAACAGTTTATTAATCAAGAATTTTTTGTCATGTCTTACAGAAACCAAAATGAACAAAGTCAAATTTTAGTAGACTGTTAGGAGACATTTCTATCAAAGGTAATTTCAGAACCATAGTAACCAGTGATTCATATTTGTTATACAGGGAATCGGTAGGGATCTTTGTGTAGAAACTGGTAGTTGAA</canonical>
            <polymorphic>TCTCCTTAGCATACCATTAACCGAAAATAAGAAACTAGAAAAATAATGAGTACAAGACATATCCAGTATCATGCATAAATCTTGGAAAACGAGATGAGAGGCTAACCAGAGAAGGACCAAGTCGACTAAAACCAAACAAGTGCACAAATAAATGGTCATAAAGCTAAAAGTGAAGCGAGTCATAAAACAAGCGTCTTCTTTCTGGATGCAGATGGCTCCGATGGCCCGTGTCTCAGAACGCACGAACCTTTTGTGGGTGGGACCCCGAATTGAATGAGAAAAATGGAAACGAAAAGCGGAGGAAATACGGGAGGAAAAATTGAACGACAAAAGCTGACGGGATAGGAATCGTAACGAGAATTCGATGTGACTGACGAGTGACGGCTCGAAAATGGGTTGCGGGGAAACGGGAAGCCGAATGGAAGTGGAAAATGGTAGGATGAGCTGTTCTTGGGAGAATGAATCACCTTGAGGAAAGGAAATGAGCCATAAATCCGACYGAACGGAGAATTGGGAAAAGAGACGCCTGCTGGGAAGAATAGATGGAAAATTCGAAAATGGTCAATTCGGGATGGGAACCGGAATGAGAAGTGACGTGAAGTGCTCAATCAAGTGTTGCGTATAGTATATTTTTGAAACGAACGAAGATCTCAAATTTTTGAAGAAAAACTCGATGGGATACTGTAGGAAGTATGACTTAACAAATCTGTTATAAGTACCACTACTCCTCCTTCAACTTTTAGTCAATCTATCTCGTTCCACGGCTGTTTATATTTAAAAGCGGCCGGAAGACAAAACATTCATCATAATATCAAAAACAGTTTATTAATCAAGAATTTTTTGTCATGTCTTACAGAAACCAAAATGAACAAAGTCAAATTTTAGTAGACTGTTAGGAGACATTTCTATCAAAGGTAATTTCAGAACCATAGTAACCAGTGATTCATATTTGTTATACAGGGAATCGGTAGGGATCTTTGTGTAGAAACTGGTAGTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>499 286 215</canonical_bands>
                <polymorphic_bands>785 215</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAAAATTGAACGACAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCGAATTTTCCATCTATTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGAAAAATTGAACGACAAAAGCTGACGGGATAGGAATCGTAACGAGAATTCGATGTGACTGACGAGTGACGGCTCGAAAATGGGTTGCGGGGAAACGGGAAGCCGAATGGAAGTGGAAAATGGTAGGATGAGCTGTTCTTGGGAGAATGAATCACCTTGAGGAAAGGAAATGAGCCATAAATCCGACCGAACGGAGAATTGGGAAAAGAGACGCCTGCTGGGAAGAATAGATGGAAAATTCGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>GGAAAAATTGAACGACAAAAGCTGACGGGATAGGAATCGTAACGAGAATTCGATGTGACTGACGAGTGACGGCTCGAAAATGGGTTGCGGGGAAACGGGAAGCCGAATGGAAGTGGAAAATGGTAGGATGAGCTGTTCTTGGGAGAATGAATCACCTTGAGGAAAGGAAATGAGCCATAAATCCGACYGAACGGAGAATTGGGAAAAGAGACGCCTGCTGGGAAGAATAGATGGAAAATTCGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24366</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>488130</contig_pos>
        <strand>+</strand>
        <context>TCCTAGAACC[C/T]ATTATYTRAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATTTGGAACATGAAATCTTTCATCATTTTACAATCATTTCCTAGAACC</left_flank>
        <right_flank>ATTATCTGAAGAAATACCCATTCCGATATTTTAATGATCTGATGTCTGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTGTGGCCTATAATAATTACTGAAAAGTATTTCAATTATTTGGATTACCATAAACTAATCGAAGCTCATACACTTTGAGCTCAATTACCATGAAAGATGTCAATGGTTTGTTAACTAAAAAATTATTTCTCATAATATCACCAACATTTTATTAGTTTACAAATTTCCGATATCTCTCATAAGAGTCGAGATAATTGAGATCAAAATGCAGATATATGGCGTCCTTTTTTGAAGCAGTTAATGCGGCATTTTTTGAATTTTGGGGCATTTTCAGAAATTTGGCAATGCCGCAATCTTCGAAACTTGGCAATGCGGAATGCTTTGAAATTTGTCCTCTAAAGCGATAAAAATTATTCTATCCGCTAAAGTTGAAAATCCGTTATAACTTTTTCATATCTCTTGAATTTGCTGAACCACGCAAAAAATTGCCTTACTTGGAGAACATCCTAATTTGGAACATGAAATCTTTCATCATTTTACAATCATTTCCTAGAACCCATTATCTGAAGAAATACCCATTCCGATATTTTAATGATCTGATGTCTGATCTACCTGTTTTTATCTTTCAAAAATCATATCATAAATTACCCCCCCCCCCCCATCGGGATTATTTATTTCTCATCACGTTTCCATTCCCCCGGTTTATCAATGACTAGAAACAGAGAAAGATGCAACTTGATAACAAAACGTTCATCTCATTTTTTTTTCTTGCGATTGGATTGAATTTCAAGTGTCATTGAAAAAAAGAAGTAGTTCAAAAGTTCAAGGATCTAGTAAAAAAGTATACGTGGTGTGATGATGGTGCCATCGGATTGGAACTTTGCATCAGCACTAGGGTAGTTCATATTACACCTCATTCCGTTTTTCTTTCCCGTCACCAGCCTAGCACGTTCGAGTTCGCCAAATCCAATAAGAAATCGACCACTTGGCCGTGTGCGGGCTCTACGTGCCAGCTCAGATAGAGAAAGAAAGAGAGTACTAGAGGTTTCCCATGAAAT</canonical>
            <polymorphic>CTTTGTGGCCTATAATAATTACTGAAAAGTATTTCAATTATTTGGATTACCATAAACTAATCGAAGCTCATACACTTTGAGCTCAATTACCATGAAAGATGTCAATGGTTTGTTAACTAAAAAATTATTTCTCATAATATCACCAACATTTTATTAGTTTACAAATTTCCGATATCTCTCATAAGAGTCGAGATAATTGAGATCAAAATGCAGATATATGGCGTCCTTTTTTGAAGCAGTTAATGCGGCATTTTTTGAATTTTGGGGCATTTTCAGAAATTTGGCAATGCCGCAATCTTCGAAACTTGGCAATGCGGAATGCTTTGAAATTTGTCCTCTAAAGCGATAAAAATTATTCTATCCGCTAAAGTTGAAAATCCGTTATAACTTTTTCATATCTCTTGAATTTGCTGAACCACGCAAAAAATTGCCTTACTTGGAGAACATCCTAATTTGGAACATGAAATCTTTCATCATTTTACAATCATTTCCTAGAACCYATTATCTGAAGAAATACCCATTCCGATATTTTAATGATCTGATGTCTGATCTACCTGTTTTTATCTTTCAAAAATCATATCATAAATTACCCCCCCCCCCCCATCGGGATTATTTATTTCTCATCACGTTTCCATTCCCCCGGTTTATCAATGACTAGAAACAGAGAAAGATGCAACTTGATAACAAAACGTTCATCTCATTTTTTTTTCTTGCGATTGGATTGAATTTCAAGTGTCATTGAAAAAAAGAAGTAGTTCAAAAGTTCAAGGATCTAGTAAAAAAGTATACGTGGTGTGATGATGGTGCCATCGGATTGGAACTTTGCATCAGCACTAGGGTAGTTCATATTACACCTCATTCCGTTTTTCTTTCCCGTCACCAGCCTAGCACGTTCGAGTTCGCCAAATCCAATAAGAAATCGACCACTTGGCCGTGTGCGGGCTCTACGTGCCAGCTCAGATAGAGAAAGAAAGAGAGTACTAGAGGTTTCCCATGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTACTTGGAGAACATCCTAAT</pcr_primer_p1>
		<pcr_primer_p2>AGTTGCATCTTTCTCTGTTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCTTACTTGGAGAACATCCTAATTTGGAACATGAAATCTTTCATCATTTTACAATCATTTCCTAGAACCCATTATCTGAAGAAATACCCATTCCGATATTTTAATGATCTGATGTCTGATCTACCTGTTTTTATCTTTCAAAAATCATATCATAAATTACCCCCCCCCCCCCATCGGGATTATTTATTTCTCATCACGTTTCCATTCCCCCGGTTTATCAATGACTAGAAACAGAGAAAGATGCAACT</canonical_amplicon>
		<polymorphic_amplicon>CCTTACTTGGAGAACATCCTAATTTGGAACATGAAATCTTTCATCATTTTACAATCATTTCCTAGAACCYATTATCTGAAGAAATACCCATTCCGATATTTTAATGATCTGATGTCTGATCTACCTGTTTTTATCTTTCAAAAATCATATCATAAATTACCCCCCCCCCCCCATCGGGATTATTTATTTCTCATCACGTTTCCATTCCCCCGGTTTATCAATGACTAGAAACAGAGAAAGATGCAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24367</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>488136</contig_pos>
        <strand>+</strand>
        <context>AACCYATTAT[C/T]TRAAGAAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAACATGAAATCTTTCATCATTTTACAATCATTTCCTAGAACCCATTAT</left_flank>
        <right_flank>TGAAGAAATACCCATTCCGATATTTTAATGATCTGATGTCTGATCTACCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCCTATAATAATTACTGAAAAGTATTTCAATTATTTGGATTACCATAAACTAATCGAAGCTCATACACTTTGAGCTCAATTACCATGAAAGATGTCAATGGTTTGTTAACTAAAAAATTATTTCTCATAATATCACCAACATTTTATTAGTTTACAAATTTCCGATATCTCTCATAAGAGTCGAGATAATTGAGATCAAAATGCAGATATATGGCGTCCTTTTTTGAAGCAGTTAATGCGGCATTTTTTGAATTTTGGGGCATTTTCAGAAATTTGGCAATGCCGCAATCTTCGAAACTTGGCAATGCGGAATGCTTTGAAATTTGTCCTCTAAAGCGATAAAAATTATTCTATCCGCTAAAGTTGAAAATCCGTTATAACTTTTTCATATCTCTTGAATTTGCTGAACCACGCAAAAAATTGCCTTACTTGGAGAACATCCTAATTTGGAACATGAAATCTTTCATCATTTTACAATCATTTCCTAGAACCCATTATCTGAAGAAATACCCATTCCGATATTTTAATGATCTGATGTCTGATCTACCTGTTTTTATCTTTCAAAAATCATATCATAAATTACCCCCCCCCCCCCATCGGGATTATTTATTTCTCATCACGTTTCCATTCCCCCGGTTTATCAATGACTAGAAACAGAGAAAGATGCAACTTGATAACAAAACGTTCATCTCATTTTTTTTTCTTGCGATTGGATTGAATTTCAAGTGTCATTGAAAAAAAGAAGTAGTTCAAAAGTTCAAGGATCTAGTAAAAAAGTATACGTGGTGTGATGATGGTGCCATCGGATTGGAACTTTGCATCAGCACTAGGGTAGTTCATATTACACCTCATTCCGTTTTTCTTTCCCGTCACCAGCCTAGCACGTTCGAGTTCGCCAAATCCAATAAGAAATCGACCACTTGGCCGTGTGCGGGCTCTACGTGCCAGCTCAGATAGAGAAAGAAAGAGAGTACTAGAGGTTTCCCATGAAATATGATA</canonical>
            <polymorphic>GGCCTATAATAATTACTGAAAAGTATTTCAATTATTTGGATTACCATAAACTAATCGAAGCTCATACACTTTGAGCTCAATTACCATGAAAGATGTCAATGGTTTGTTAACTAAAAAATTATTTCTCATAATATCACCAACATTTTATTAGTTTACAAATTTCCGATATCTCTCATAAGAGTCGAGATAATTGAGATCAAAATGCAGATATATGGCGTCCTTTTTTGAAGCAGTTAATGCGGCATTTTTTGAATTTTGGGGCATTTTCAGAAATTTGGCAATGCCGCAATCTTCGAAACTTGGCAATGCGGAATGCTTTGAAATTTGTCCTCTAAAGCGATAAAAATTATTCTATCCGCTAAAGTTGAAAATCCGTTATAACTTTTTCATATCTCTTGAATTTGCTGAACCACGCAAAAAATTGCCTTACTTGGAGAACATCCTAATTTGGAACATGAAATCTTTCATCATTTTACAATCATTTCCTAGAACCCATTATYTGAAGAAATACCCATTCCGATATTTTAATGATCTGATGTCTGATCTACCTGTTTTTATCTTTCAAAAATCATATCATAAATTACCCCCCCCCCCCCATCGGGATTATTTATTTCTCATCACGTTTCCATTCCCCCGGTTTATCAATGACTAGAAACAGAGAAAGATGCAACTTGATAACAAAACGTTCATCTCATTTTTTTTTCTTGCGATTGGATTGAATTTCAAGTGTCATTGAAAAAAAGAAGTAGTTCAAAAGTTCAAGGATCTAGTAAAAAAGTATACGTGGTGTGATGATGGTGCCATCGGATTGGAACTTTGCATCAGCACTAGGGTAGTTCATATTACACCTCATTCCGTTTTTCTTTCCCGTCACCAGCCTAGCACGTTCGAGTTCGCCAAATCCAATAAGAAATCGACCACTTGGCCGTGTGCGGGCTCTACGTGCCAGCTCAGATAGAGAAAGAAAGAGAGTACTAGAGGTTTCCCATGAAATATGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>265 232 164 147 105 47 17 16 7</canonical_bands>
                <polymorphic_bands>265 249 164 147 105 47 16 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTACTTGGAGAACATCCTAAT</pcr_primer_p1>
		<pcr_primer_p2>AGTTGCATCTTTCTCTGTTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCTTACTTGGAGAACATCCTAATTTGGAACATGAAATCTTTCATCATTTTACAATCATTTCCTAGAACCCATTATCTGAAGAAATACCCATTCCGATATTTTAATGATCTGATGTCTGATCTACCTGTTTTTATCTTTCAAAAATCATATCATAAATTACCCCCCCCCCCCCATCGGGATTATTTATTTCTCATCACGTTTCCATTCCCCCGGTTTATCAATGACTAGAAACAGAGAAAGATGCAACT</canonical_amplicon>
		<polymorphic_amplicon>CCTTACTTGGAGAACATCCTAATTTGGAACATGAAATCTTTCATCATTTTACAATCATTTCCTAGAACCCATTATYTGAAGAAATACCCATTCCGATATTTTAATGATCTGATGTCTGATCTACCTGTTTTTATCTTTCAAAAATCATATCATAAATTACCCCCCCCCCCCCATCGGGATTATTTATTTCTCATCACGTTTCCATTCCCCCGGTTTATCAATGACTAGAAACAGAGAAAGATGCAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24368</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>488138</contig_pos>
        <strand>+</strand>
        <context>CCYATTATYT[A/G]AAGAAATACC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACATGAAATCTTTCATCATTTTACAATCATTTCCTAGAACCCATTATCT</left_flank>
        <right_flank>AAGAAATACCCATTCCGATATTTTAATGATCTGATGTCTGATCTACCTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTATAATAATTACTGAAAAGTATTTCAATTATTTGGATTACCATAAACTAATCGAAGCTCATACACTTTGAGCTCAATTACCATGAAAGATGTCAATGGTTTGTTAACTAAAAAATTATTTCTCATAATATCACCAACATTTTATTAGTTTACAAATTTCCGATATCTCTCATAAGAGTCGAGATAATTGAGATCAAAATGCAGATATATGGCGTCCTTTTTTGAAGCAGTTAATGCGGCATTTTTTGAATTTTGGGGCATTTTCAGAAATTTGGCAATGCCGCAATCTTCGAAACTTGGCAATGCGGAATGCTTTGAAATTTGTCCTCTAAAGCGATAAAAATTATTCTATCCGCTAAAGTTGAAAATCCGTTATAACTTTTTCATATCTCTTGAATTTGCTGAACCACGCAAAAAATTGCCTTACTTGGAGAACATCCTAATTTGGAACATGAAATCTTTCATCATTTTACAATCATTTCCTAGAACCCATTATCTGAAGAAATACCCATTCCGATATTTTAATGATCTGATGTCTGATCTACCTGTTTTTATCTTTCAAAAATCATATCATAAATTACCCCCCCCCCCCCATCGGGATTATTTATTTCTCATCACGTTTCCATTCCCCCGGTTTATCAATGACTAGAAACAGAGAAAGATGCAACTTGATAACAAAACGTTCATCTCATTTTTTTTTCTTGCGATTGGATTGAATTTCAAGTGTCATTGAAAAAAAGAAGTAGTTCAAAAGTTCAAGGATCTAGTAAAAAAGTATACGTGGTGTGATGATGGTGCCATCGGATTGGAACTTTGCATCAGCACTAGGGTAGTTCATATTACACCTCATTCCGTTTTTCTTTCCCGTCACCAGCCTAGCACGTTCGAGTTCGCCAAATCCAATAAGAAATCGACCACTTGGCCGTGTGCGGGCTCTACGTGCCAGCTCAGATAGAGAAAGAAAGAGAGTACTAGAGGTTTCCCATGAAATATGATAGG</canonical>
            <polymorphic>CCTATAATAATTACTGAAAAGTATTTCAATTATTTGGATTACCATAAACTAATCGAAGCTCATACACTTTGAGCTCAATTACCATGAAAGATGTCAATGGTTTGTTAACTAAAAAATTATTTCTCATAATATCACCAACATTTTATTAGTTTACAAATTTCCGATATCTCTCATAAGAGTCGAGATAATTGAGATCAAAATGCAGATATATGGCGTCCTTTTTTGAAGCAGTTAATGCGGCATTTTTTGAATTTTGGGGCATTTTCAGAAATTTGGCAATGCCGCAATCTTCGAAACTTGGCAATGCGGAATGCTTTGAAATTTGTCCTCTAAAGCGATAAAAATTATTCTATCCGCTAAAGTTGAAAATCCGTTATAACTTTTTCATATCTCTTGAATTTGCTGAACCACGCAAAAAATTGCCTTACTTGGAGAACATCCTAATTTGGAACATGAAATCTTTCATCATTTTACAATCATTTCCTAGAACCCATTATCTRAAGAAATACCCATTCCGATATTTTAATGATCTGATGTCTGATCTACCTGTTTTTATCTTTCAAAAATCATATCATAAATTACCCCCCCCCCCCCATCGGGATTATTTATTTCTCATCACGTTTCCATTCCCCCGGTTTATCAATGACTAGAAACAGAGAAAGATGCAACTTGATAACAAAACGTTCATCTCATTTTTTTTTCTTGCGATTGGATTGAATTTCAAGTGTCATTGAAAAAAAGAAGTAGTTCAAAAGTTCAAGGATCTAGTAAAAAAGTATACGTGGTGTGATGATGGTGCCATCGGATTGGAACTTTGCATCAGCACTAGGGTAGTTCATATTACACCTCATTCCGTTTTTCTTTCCCGTCACCAGCCTAGCACGTTCGAGTTCGCCAAATCCAATAAGAAATCGACCACTTGGCCGTGTGCGGGCTCTACGTGCCAGCTCAGATAGAGAAAGAAAGAGAGTACTAGAGGTTTCCCATGAAATATGATAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>265 232 162 147 105 49 17 16 7</canonical_bands>
                <polymorphic_bands>265 249 162 147 105 49 16 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTACTTGGAGAACATCCTAAT</pcr_primer_p1>
		<pcr_primer_p2>AGTTGCATCTTTCTCTGTTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCTTACTTGGAGAACATCCTAATTTGGAACATGAAATCTTTCATCATTTTACAATCATTTCCTAGAACCCATTATCTGAAGAAATACCCATTCCGATATTTTAATGATCTGATGTCTGATCTACCTGTTTTTATCTTTCAAAAATCATATCATAAATTACCCCCCCCCCCCCATCGGGATTATTTATTTCTCATCACGTTTCCATTCCCCCGGTTTATCAATGACTAGAAACAGAGAAAGATGCAACT</canonical_amplicon>
		<polymorphic_amplicon>CCTTACTTGGAGAACATCCTAATTTGGAACATGAAATCTTTCATCATTTTACAATCATTTCCTAGAACCCATTATCTRAAGAAATACCCATTCCGATATTTTAATGATCTGATGTCTGATCTACCTGTTTTTATCTTTCAAAAATCATATCATAAATTACCCCCCCCCCCCCATCGGGATTATTTATTTCTCATCACGTTTCCATTCCCCCGGTTTATCAATGACTAGAAACAGAGAAAGATGCAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24369</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>488169</contig_pos>
        <strand>+</strand>
        <context>TTTTAATGAT[C/T]TGATGTCTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCTAGAACCCATTATCTGAAGAAATACCCATTCCGATATTTTAATGAT</left_flank>
        <right_flank>TGATGTCTGATCTACCTGTTTTTATCTTTCAAAAATCATATCATAAATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTGGATTACCATAAACTAATCGAAGCTCATACACTTTGAGCTCAATTACCATGAAAGATGTCAATGGTTTGTTAACTAAAAAATTATTTCTCATAATATCACCAACATTTTATTAGTTTACAAATTTCCGATATCTCTCATAAGAGTCGAGATAATTGAGATCAAAATGCAGATATATGGCGTCCTTTTTTGAAGCAGTTAATGCGGCATTTTTTGAATTTTGGGGCATTTTCAGAAATTTGGCAATGCCGCAATCTTCGAAACTTGGCAATGCGGAATGCTTTGAAATTTGTCCTCTAAAGCGATAAAAATTATTCTATCCGCTAAAGTTGAAAATCCGTTATAACTTTTTCATATCTCTTGAATTTGCTGAACCACGCAAAAAATTGCCTTACTTGGAGAACATCCTAATTTGGAACATGAAATCTTTCATCATTTTACAATCATTTCCTAGAACCCATTATCTGAAGAAATACCCATTCCGATATTTTAATGATCTGATGTCTGATCTACCTGTTTTTATCTTTCAAAAATCATATCATAAATTACCCCCCCCCCCCCATCGGGATTATTTATTTCTCATCACGTTTCCATTCCCCCGGTTTATCAATGACTAGAAACAGAGAAAGATGCAACTTGATAACAAAACGTTCATCTCATTTTTTTTTCTTGCGATTGGATTGAATTTCAAGTGTCATTGAAAAAAAGAAGTAGTTCAAAAGTTCAAGGATCTAGTAAAAAAGTATACGTGGTGTGATGATGGTGCCATCGGATTGGAACTTTGCATCAGCACTAGGGTAGTTCATATTACACCTCATTCCGTTTTTCTTTCCCGTCACCAGCCTAGCACGTTCGAGTTCGCCAAATCCAATAAGAAATCGACCACTTGGCCGTGTGCGGGCTCTACGTGCCAGCTCAGATAGAGAAAGAAAGAGAGTACTAGAGGTTTCCCATGAAATATGATAGGTCGTGTTGAAACTTGTCTCCAAGAAACCAAA</canonical>
            <polymorphic>ATTTGGATTACCATAAACTAATCGAAGCTCATACACTTTGAGCTCAATTACCATGAAAGATGTCAATGGTTTGTTAACTAAAAAATTATTTCTCATAATATCACCAACATTTTATTAGTTTACAAATTTCCGATATCTCTCATAAGAGTCGAGATAATTGAGATCAAAATGCAGATATATGGCGTCCTTTTTTGAAGCAGTTAATGCGGCATTTTTTGAATTTTGGGGCATTTTCAGAAATTTGGCAATGCCGCAATCTTCGAAACTTGGCAATGCGGAATGCTTTGAAATTTGTCCTCTAAAGCGATAAAAATTATTCTATCCGCTAAAGTTGAAAATCCGTTATAACTTTTTCATATCTCTTGAATTTGCTGAACCACGCAAAAAATTGCCTTACTTGGAGAACATCCTAATTTGGAACATGAAATCTTTCATCATTTTACAATCATTTCCTAGAACCCATTATCTGAAGAAATACCCATTCCGATATTTTAATGATYTGATGTCTGATCTACCTGTTTTTATCTTTCAAAAATCATATCATAAATTACCCCCCCCCCCCCATCGGGATTATTTATTTCTCATCACGTTTCCATTCCCCCGGTTTATCAATGACTAGAAACAGAGAAAGATGCAACTTGATAACAAAACGTTCATCTCATTTTTTTTTCTTGCGATTGGATTGAATTTCAAGTGTCATTGAAAAAAAGAAGTAGTTCAAAAGTTCAAGGATCTAGTAAAAAAGTATACGTGGTGTGATGATGGTGCCATCGGATTGGAACTTTGCATCAGCACTAGGGTAGTTCATATTACACCTCATTCCGTTTTTCTTTCCCGTCACCAGCCTAGCACGTTCGAGTTCGCCAAATCCAATAAGAAATCGACCACTTGGCCGTGTGCGGGCTCTACGTGCCAGCTCAGATAGAGAAAGAAAGAGAGTACTAGAGGTTTCCCATGAAATATGATAGGTCGTGTTGAAACTTGTCTCCAAGAAACCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>335 270 222 161 12</canonical_bands>
                <polymorphic_bands>347 270 222 161</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>265 232 147 131 105 80 17 16 7</canonical_bands>
                <polymorphic_bands>265 232 147 131 105 80 23 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTACTTGGAGAACATCCTAAT</pcr_primer_p1>
		<pcr_primer_p2>AGTTGCATCTTTCTCTGTTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCTTACTTGGAGAACATCCTAATTTGGAACATGAAATCTTTCATCATTTTACAATCATTTCCTAGAACCCATTATCTGAAGAAATACCCATTCCGATATTTTAATGATCTGATGTCTGATCTACCTGTTTTTATCTTTCAAAAATCATATCATAAATTACCCCCCCCCCCCCATCGGGATTATTTATTTCTCATCACGTTTCCATTCCCCCGGTTTATCAATGACTAGAAACAGAGAAAGATGCAACT</canonical_amplicon>
		<polymorphic_amplicon>CCTTACTTGGAGAACATCCTAATTTGGAACATGAAATCTTTCATCATTTTACAATCATTTCCTAGAACCCATTATCTGAAGAAATACCCATTCCGATATTTTAATGATYTGATGTCTGATCTACCTGTTTTTATCTTTCAAAAATCATATCATAAATTACCCCCCCCCCCCCATCGGGATTATTTATTTCTCATCACGTTTCCATTCCCCCGGTTTATCAATGACTAGAAACAGAGAAAGATGCAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24370</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>488181</contig_pos>
        <strand>+</strand>
        <context>GATGTCTGAT[C/T]TACCTGTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTATCTGAAGAAATACCCATTCCGATATTTTAATGATCTGATGTCTGAT</left_flank>
        <right_flank>TACCTGTTTTTATCTTTCAAAAATCATATCATAAATTACCCCCCCCCCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAACTAATCGAAGCTCATACACTTTGAGCTCAATTACCATGAAAGATGTCAATGGTTTGTTAACTAAAAAATTATTTCTCATAATATCACCAACATTTTATTAGTTTACAAATTTCCGATATCTCTCATAAGAGTCGAGATAATTGAGATCAAAATGCAGATATATGGCGTCCTTTTTTGAAGCAGTTAATGCGGCATTTTTTGAATTTTGGGGCATTTTCAGAAATTTGGCAATGCCGCAATCTTCGAAACTTGGCAATGCGGAATGCTTTGAAATTTGTCCTCTAAAGCGATAAAAATTATTCTATCCGCTAAAGTTGAAAATCCGTTATAACTTTTTCATATCTCTTGAATTTGCTGAACCACGCAAAAAATTGCCTTACTTGGAGAACATCCTAATTTGGAACATGAAATCTTTCATCATTTTACAATCATTTCCTAGAACCCATTATCTGAAGAAATACCCATTCCGATATTTTAATGATCTGATGTCTGATCTACCTGTTTTTATCTTTCAAAAATCATATCATAAATTACCCCCCCCCCCCCATCGGGATTATTTATTTCTCATCACGTTTCCATTCCCCCGGTTTATCAATGACTAGAAACAGAGAAAGATGCAACTTGATAACAAAACGTTCATCTCATTTTTTTTTCTTGCGATTGGATTGAATTTCAAGTGTCATTGAAAAAAAGAAGTAGTTCAAAAGTTCAAGGATCTAGTAAAAAAGTATACGTGGTGTGATGATGGTGCCATCGGATTGGAACTTTGCATCAGCACTAGGGTAGTTCATATTACACCTCATTCCGTTTTTCTTTCCCGTCACCAGCCTAGCACGTTCGAGTTCGCCAAATCCAATAAGAAATCGACCACTTGGCCGTGTGCGGGCTCTACGTGCCAGCTCAGATAGAGAAAGAAAGAGAGTACTAGAGGTTTCCCATGAAATATGATAGGTCGTGTTGAAACTTGTCTCCAAGAAACCAAATGAACCGGAATT</canonical>
            <polymorphic>ATAAACTAATCGAAGCTCATACACTTTGAGCTCAATTACCATGAAAGATGTCAATGGTTTGTTAACTAAAAAATTATTTCTCATAATATCACCAACATTTTATTAGTTTACAAATTTCCGATATCTCTCATAAGAGTCGAGATAATTGAGATCAAAATGCAGATATATGGCGTCCTTTTTTGAAGCAGTTAATGCGGCATTTTTTGAATTTTGGGGCATTTTCAGAAATTTGGCAATGCCGCAATCTTCGAAACTTGGCAATGCGGAATGCTTTGAAATTTGTCCTCTAAAGCGATAAAAATTATTCTATCCGCTAAAGTTGAAAATCCGTTATAACTTTTTCATATCTCTTGAATTTGCTGAACCACGCAAAAAATTGCCTTACTTGGAGAACATCCTAATTTGGAACATGAAATCTTTCATCATTTTACAATCATTTCCTAGAACCCATTATCTGAAGAAATACCCATTCCGATATTTTAATGATCTGATGTCTGATYTACCTGTTTTTATCTTTCAAAAATCATATCATAAATTACCCCCCCCCCCCCATCGGGATTATTTATTTCTCATCACGTTTCCATTCCCCCGGTTTATCAATGACTAGAAACAGAGAAAGATGCAACTTGATAACAAAACGTTCATCTCATTTTTTTTTCTTGCGATTGGATTGAATTTCAAGTGTCATTGAAAAAAAGAAGTAGTTCAAAAGTTCAAGGATCTAGTAAAAAAGTATACGTGGTGTGATGATGGTGCCATCGGATTGGAACTTTGCATCAGCACTAGGGTAGTTCATATTACACCTCATTCCGTTTTTCTTTCCCGTCACCAGCCTAGCACGTTCGAGTTCGCCAAATCCAATAAGAAATCGACCACTTGGCCGTGTGCGGGCTCTACGTGCCAGCTCAGATAGAGAAAGAAAGAGAGTACTAGAGGTTTCCCATGAAATATGATAGGTCGTGTTGAAACTTGTCTCCAAGAAACCAAATGAACCGGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>335 282 222 149 12</canonical_bands>
                <polymorphic_bands>335 282 234 149</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTACTTGGAGAACATCCTAAT</pcr_primer_p1>
		<pcr_primer_p2>AGTTGCATCTTTCTCTGTTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCTTACTTGGAGAACATCCTAATTTGGAACATGAAATCTTTCATCATTTTACAATCATTTCCTAGAACCCATTATCTGAAGAAATACCCATTCCGATATTTTAATGATCTGATGTCTGATCTACCTGTTTTTATCTTTCAAAAATCATATCATAAATTACCCCCCCCCCCCCATCGGGATTATTTATTTCTCATCACGTTTCCATTCCCCCGGTTTATCAATGACTAGAAACAGAGAAAGATGCAACT</canonical_amplicon>
		<polymorphic_amplicon>CCTTACTTGGAGAACATCCTAATTTGGAACATGAAATCTTTCATCATTTTACAATCATTTCCTAGAACCCATTATCTGAAGAAATACCCATTCCGATATTTTAATGATCTGATGTCTGATYTACCTGTTTTTATCTTTCAAAAATCATATCATAAATTACCCCCCCCCCCCCATCGGGATTATTTATTTCTCATCACGTTTCCATTCCCCCGGTTTATCAATGACTAGAAACAGAGAAAGATGCAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24371</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>488195</contig_pos>
        <strand>+</strand>
        <context>CTGTTTTTAT[C/T]TTTCAAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACCCATTCCGATATTTTAATGATCTGATGTCTGATCTACCTGTTTTTAT</left_flank>
        <right_flank>TTTCAAAAATCATATCATAAATTACCCCCCCCCCCCCATCGGGATTATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCATACACTTTGAGCTCAATTACCATGAAAGATGTCAATGGTTTGTTAACTAAAAAATTATTTCTCATAATATCACCAACATTTTATTAGTTTACAAATTTCCGATATCTCTCATAAGAGTCGAGATAATTGAGATCAAAATGCAGATATATGGCGTCCTTTTTTGAAGCAGTTAATGCGGCATTTTTTGAATTTTGGGGCATTTTCAGAAATTTGGCAATGCCGCAATCTTCGAAACTTGGCAATGCGGAATGCTTTGAAATTTGTCCTCTAAAGCGATAAAAATTATTCTATCCGCTAAAGTTGAAAATCCGTTATAACTTTTTCATATCTCTTGAATTTGCTGAACCACGCAAAAAATTGCCTTACTTGGAGAACATCCTAATTTGGAACATGAAATCTTTCATCATTTTACAATCATTTCCTAGAACCCATTATCTGAAGAAATACCCATTCCGATATTTTAATGATCTGATGTCTGATCTACCTGTTTTTATCTTTCAAAAATCATATCATAAATTACCCCCCCCCCCCCATCGGGATTATTTATTTCTCATCACGTTTCCATTCCCCCGGTTTATCAATGACTAGAAACAGAGAAAGATGCAACTTGATAACAAAACGTTCATCTCATTTTTTTTTCTTGCGATTGGATTGAATTTCAAGTGTCATTGAAAAAAAGAAGTAGTTCAAAAGTTCAAGGATCTAGTAAAAAAGTATACGTGGTGTGATGATGGTGCCATCGGATTGGAACTTTGCATCAGCACTAGGGTAGTTCATATTACACCTCATTCCGTTTTTCTTTCCCGTCACCAGCCTAGCACGTTCGAGTTCGCCAAATCCAATAAGAAATCGACCACTTGGCCGTGTGCGGGCTCTACGTGCCAGCTCAGATAGAGAAAGAAAGAGAGTACTAGAGGTTTCCCATGAAATATGATAGGTCGTGTTGAAACTTGTCTCCAAGAAACCAAATGAACCGGAATTTTCTGGCAGAAAGT</canonical>
            <polymorphic>GCTCATACACTTTGAGCTCAATTACCATGAAAGATGTCAATGGTTTGTTAACTAAAAAATTATTTCTCATAATATCACCAACATTTTATTAGTTTACAAATTTCCGATATCTCTCATAAGAGTCGAGATAATTGAGATCAAAATGCAGATATATGGCGTCCTTTTTTGAAGCAGTTAATGCGGCATTTTTTGAATTTTGGGGCATTTTCAGAAATTTGGCAATGCCGCAATCTTCGAAACTTGGCAATGCGGAATGCTTTGAAATTTGTCCTCTAAAGCGATAAAAATTATTCTATCCGCTAAAGTTGAAAATCCGTTATAACTTTTTCATATCTCTTGAATTTGCTGAACCACGCAAAAAATTGCCTTACTTGGAGAACATCCTAATTTGGAACATGAAATCTTTCATCATTTTACAATCATTTCCTAGAACCCATTATCTGAAGAAATACCCATTCCGATATTTTAATGATCTGATGTCTGATCTACCTGTTTTTATYTTTCAAAAATCATATCATAAATTACCCCCCCCCCCCCATCGGGATTATTTATTTCTCATCACGTTTCCATTCCCCCGGTTTATCAATGACTAGAAACAGAGAAAGATGCAACTTGATAACAAAACGTTCATCTCATTTTTTTTTCTTGCGATTGGATTGAATTTCAAGTGTCATTGAAAAAAAGAAGTAGTTCAAAAGTTCAAGGATCTAGTAAAAAAGTATACGTGGTGTGATGATGGTGCCATCGGATTGGAACTTTGCATCAGCACTAGGGTAGTTCATATTACACCTCATTCCGTTTTTCTTTCCCGTCACCAGCCTAGCACGTTCGAGTTCGCCAAATCCAATAAGAAATCGACCACTTGGCCGTGTGCGGGCTCTACGTGCCAGCTCAGATAGAGAAAGAAAGAGAGTACTAGAGGTTTCCCATGAAATATGATAGGTCGTGTTGAAACTTGTCTCCAAGAAACCAAATGAACCGGAATTTTCTGGCAGAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTACTTGGAGAACATCCTAAT</pcr_primer_p1>
		<pcr_primer_p2>AGTTGCATCTTTCTCTGTTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCTTACTTGGAGAACATCCTAATTTGGAACATGAAATCTTTCATCATTTTACAATCATTTCCTAGAACCCATTATCTGAAGAAATACCCATTCCGATATTTTAATGATCTGATGTCTGATCTACCTGTTTTTATCTTTCAAAAATCATATCATAAATTACCCCCCCCCCCCCATCGGGATTATTTATTTCTCATCACGTTTCCATTCCCCCGGTTTATCAATGACTAGAAACAGAGAAAGATGCAACT</canonical_amplicon>
		<polymorphic_amplicon>CCTTACTTGGAGAACATCCTAATTTGGAACATGAAATCTTTCATCATTTTACAATCATTTCCTAGAACCCATTATCTGAAGAAATACCCATTCCGATATTTTAATGATCTGATGTCTGATCTACCTGTTTTTATYTTTCAAAAATCATATCATAAATTACCCCCCCCCCCCCATCGGGATTATTTATTTCTCATCACGTTTCCATTCCCCCGGTTTATCAATGACTAGAAACAGAGAAAGATGCAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24372</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>674207</contig_pos>
        <strand></strand>
        <context>gatctaggtc[T/A]gttttacatc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAACTGGGAATCAAAAAAATTCCGTGGAAACAGAAATTTTGATCTAGGTC</left_flank>
        <right_flank>GTTTTACATCTCTAAAAGTTTTCAAAACGCACGGAAACTTGACCGCCGAG</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACCAATAACTATGAGAAGGCAAACGCATCGGACAAGTTCTGTGATAACGAATGGGAGGAAAAGAAGTGGTCGTTCGTTGAAAAGAGCATTGATGAGCACAAGGAAACAAATCATCTCGAATAGAAAGAGAACCGCATGACCTATAAAATCTTCATGTTTTCAAGTAAAAATAATAAAAGACTCACCAATTGATGGAACTACCAGTTTGAAATGGTCAATGAAGAAGAATTGGGCGATTCCAGCAGCAAAAATCATTATGAAAATCACAGAACACAGTATTGACTTCTGTAAATTAAATTTTTCTGCATCTTCAAACAATGAGATATACAAAAACAAAATTTTCAGTTTATTTTTGACCATTCTCACAATTTCCAGGAGTGTGAAGCTCGGCTATCAAGTTTCCAATAACTTTATAAACGTTGACTTAGAAATCTTCACATAGCTCAAAAACTGGGAATCAAAAAAATTCCGTGGAAACAGAAATTTTGATCTAGGTCTGTTTTACATCTCTAAAAGTTTTCAAAACGCACGGAAACTTGACCGCCGAGCAGCAGACTTCTGAAAACGGTCGAAATGCCCAAAAATTGAATGGAAAATACGTTTTTATATATTTTATTGGCTGGTATTGTGTATATTCCTTACCTTCATGCTGGTGTTGCAGGTTCTTCCAGACGATGTTAGCCAATCATCAATGCCAAAGAAGTAGATCATTTCGATCGTTCAGAAAGCTTGAGTTACCGAAATCCGGATGAAATCTGAAAAAAAAACAAATTAATATTTGGCGGAACAGAACAAAAAATAGAATAGAGATGAACAGGTGAATTTTTAGATGACAAATAGGCTGGAGAATATTTTTTTCTTTTCAATTATATTAGAATAACAATATGCAGATGAGTAATAAAAAAGTCAACGTGGAAAAAGAAATCCATTAACTTGATGAAAAAAAAACTAGAGGTTTTTTCATTTTCGTCACTGATCTTGGGACTTTCCGGTTCAGG</canonical>
            <polymorphic>AGACCAATAACTATGAGAAGGCAAACGCATCGGACAAGTTCTGTGATAACGAATGGGAGGAAAAGAAGTGGTCGTTCGTTGAAAAGAGCATTGATGAGCACAAGGAAACAAATCATCTCGAATAGAAAGAGAACCGCATGACCTATAAAATCTTCATGTTTTCAAGTAAAAATAATAAAAGACTCACCAATTGATGGAACTACCAGTTTGAAATGGTCAATGAAGAAGAATTGGGCGATTCCAGCAGCAAAAATCATTATGAAAATCACAGAACACAGTATTGACTTCTGTAAATTAAATTTTTCTGCATCTTCAAACAATGAGATATACAAAAACAAAATTTTCAGTTTATTTTTGACCATTCTCACAATTTCCAGGAGTGTGAAGCTCGGCTATCAAGTTTCCAATAACTTTATAAACGTTGACTTAGAAATCTTCACATAGCTCAAAAACTGGGAATCAAAAAAATTCCGTGGAAACAGAAATTTTGATCTAGGTCWGTTTTACATCTCTAAAAGTTTTCAAAACGCACGGAAACTTGACCGCCGAGCAGCAGACTTCTGAAAACGGTCGAAATGCCCAAAAATTGAATGGAAAATACGTTTTTATATATTTTATTGGCTGGTATTGTGTATATTCCTTACCTTCATGCTGGTGTTGCAGGTTCTTCCAGACGATGTTAGCCAATCATCAATGCCAAAGAAGTAGATCATTTCGATCGTTCAGAAAGCTTGAGTTACCGAAATCCGGATGAAATCTGAAAAAAAAACAAATTAATATTTGGCGGAACAGAACAAAAAATAGAATAGAGATGAACAGGTGAATTTTTAGATGACAAATAGGCTGGAGAATATTTTTTTCTTTTCAATTATATTAGAATAACAATATGCAGATGAGTAATAAAAAAGTCAACGTGGAAAAAGAAATCCATTAACTTGATGAAAAAAAAACTAGAGGTTTTTTCATTTTCGTCACTGATCTTGGGACTTTCCGGTTCAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTAAATTTTTCTGCATCTTCAA</pcr_primer_p1>
		<pcr_primer_p2>AACACCAGCATGAAGGTAAG</pcr_primer_p2>
		<pcr_amplicon_size>366</pcr_amplicon_size>
		<canonical_amplicon>ATTAAATTTTTCTGCATCTTCAAACAATGAGATATACAAAAACAAAATTTTCAGTTTATTTTTGACCATTCTCACAATTTCCAGGAGTGTGAAGCTCGGCTATCAAGTTTCCAATAACTTTATAAACGTTGACTTAGAAATCTTCACATAGCTCAAAAACTGGGAATCAAAAAAATTCCGTGGAAACAGAAATTTTGATCTAGGTCTGTTTTACATCTCTAAAAGTTTTCAAAACGCACGGAAACTTGACCGCCGAGCAGCAGACTTCTGAAAACGGTCGAAATGCCCAAAAATTGAATGGAAAATACGTTTTTATATATTTTATTGGCTGGTATTGTGTATATTCCTTACCTTCATGCTGGTGTT</canonical_amplicon>
		<polymorphic_amplicon>ATTAAATTTTTCTGCATCTTCAAACAATGAGATATACAAAAACAAAATTTTCAGTTTATTTTTGACCATTCTCACAATTTCCAGGAGTGTGAAGCTCGGCTATCAAGTTTCCAATAACTTTATAAACGTTGACTTAGAAATCTTCACATAGCTCAAAAACTGGGAATCAAAAAAATTCCGTGGAAACAGAAATTTTGATCTAGGTCWGTTTTACATCTCTAAAAGTTTTCAAAACGCACGGAAACTTGACCGCCGAGCAGCAGACTTCTGAAAACGGTCGAAATGCCCAAAAATTGAATGGAAAATACGTTTTTATATATTTTATTGGCTGGTATTGTGTATATTCCTTACCTTCATGCTGGTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24373</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>674249</contig_pos>
        <strand></strand>
        <context>cggaaacttg[A/G]ccgccgagca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTAGGTCTGTTTTACATCTCTAAAAGTTTTCAAAACGCACGGAAACTTG</left_flank>
        <right_flank>CCGCCGAGCAGCAGACTTCTGAAAACGGTCGAAATGCCCAAAAATTGAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGATAACGAATGGGAGGAAAAGAAGTGGTCGTTCGTTGAAAAGAGCATTGATGAGCACAAGGAAACAAATCATCTCGAATAGAAAGAGAACCGCATGACCTATAAAATCTTCATGTTTTCAAGTAAAAATAATAAAAGACTCACCAATTGATGGAACTACCAGTTTGAAATGGTCAATGAAGAAGAATTGGGCGATTCCAGCAGCAAAAATCATTATGAAAATCACAGAACACAGTATTGACTTCTGTAAATTAAATTTTTCTGCATCTTCAAACAATGAGATATACAAAAACAAAATTTTCAGTTTATTTTTGACCATTCTCACAATTTCCAGGAGTGTGAAGCTCGGCTATCAAGTTTCCAATAACTTTATAAACGTTGACTTAGAAATCTTCACATAGCTCAAAAACTGGGAATCAAAAAAATTCCGTGGAAACAGAAATTTTGATCTAGGTCTGTTTTACATCTCTAAAAGTTTTCAAAACGCACGGAAACTTGACCGCCGAGCAGCAGACTTCTGAAAACGGTCGAAATGCCCAAAAATTGAATGGAAAATACGTTTTTATATATTTTATTGGCTGGTATTGTGTATATTCCTTACCTTCATGCTGGTGTTGCAGGTTCTTCCAGACGATGTTAGCCAATCATCAATGCCAAAGAAGTAGATCATTTCGATCGTTCAGAAAGCTTGAGTTACCGAAATCCGGATGAAATCTGAAAAAAAAACAAATTAATATTTGGCGGAACAGAACAAAAAATAGAATAGAGATGAACAGGTGAATTTTTAGATGACAAATAGGCTGGAGAATATTTTTTTCTTTTCAATTATATTAGAATAACAATATGCAGATGAGTAATAAAAAAGTCAACGTGGAAAAAGAAATCCATTAACTTGATGAAAAAAAAACTAGAGGTTTTTTCATTTTCGTCACTGATCTTGGGACTTTCCGGTTCAGGAGTTAGAGAGCAAAGGAAATGAATCGCACGTTCCAGTGATCA</canonical>
            <polymorphic>GTGATAACGAATGGGAGGAAAAGAAGTGGTCGTTCGTTGAAAAGAGCATTGATGAGCACAAGGAAACAAATCATCTCGAATAGAAAGAGAACCGCATGACCTATAAAATCTTCATGTTTTCAAGTAAAAATAATAAAAGACTCACCAATTGATGGAACTACCAGTTTGAAATGGTCAATGAAGAAGAATTGGGCGATTCCAGCAGCAAAAATCATTATGAAAATCACAGAACACAGTATTGACTTCTGTAAATTAAATTTTTCTGCATCTTCAAACAATGAGATATACAAAAACAAAATTTTCAGTTTATTTTTGACCATTCTCACAATTTCCAGGAGTGTGAAGCTCGGCTATCAAGTTTCCAATAACTTTATAAACGTTGACTTAGAAATCTTCACATAGCTCAAAAACTGGGAATCAAAAAAATTCCGTGGAAACAGAAATTTTGATCTAGGTCTGTTTTACATCTCTAAAAGTTTTCAAAACGCACGGAAACTTGRCCGCCGAGCAGCAGACTTCTGAAAACGGTCGAAATGCCCAAAAATTGAATGGAAAATACGTTTTTATATATTTTATTGGCTGGTATTGTGTATATTCCTTACCTTCATGCTGGTGTTGCAGGTTCTTCCAGACGATGTTAGCCAATCATCAATGCCAAAGAAGTAGATCATTTCGATCGTTCAGAAAGCTTGAGTTACCGAAATCCGGATGAAATCTGAAAAAAAAACAAATTAATATTTGGCGGAACAGAACAAAAAATAGAATAGAGATGAACAGGTGAATTTTTAGATGACAAATAGGCTGGAGAATATTTTTTTCTTTTCAATTATATTAGAATAACAATATGCAGATGAGTAATAAAAAAGTCAACGTGGAAAAAGAAATCCATTAACTTGATGAAAAAAAAACTAGAGGTTTTTTCATTTTCGTCACTGATCTTGGGACTTTCCGGTTCAGGAGTTAGAGAGCAAAGGAAATGAATCGCACGTTCCAGTGATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTAAATTTTTCTGCATCTTCAA</pcr_primer_p1>
		<pcr_primer_p2>AACACCAGCATGAAGGTAAG</pcr_primer_p2>
		<pcr_amplicon_size>366</pcr_amplicon_size>
		<canonical_amplicon>ATTAAATTTTTCTGCATCTTCAAACAATGAGATATACAAAAACAAAATTTTCAGTTTATTTTTGACCATTCTCACAATTTCCAGGAGTGTGAAGCTCGGCTATCAAGTTTCCAATAACTTTATAAACGTTGACTTAGAAATCTTCACATAGCTCAAAAACTGGGAATCAAAAAAATTCCGTGGAAACAGAAATTTTGATCTAGGTCTGTTTTACATCTCTAAAAGTTTTCAAAACGCACGGAAACTTGACCGCCGAGCAGCAGACTTCTGAAAACGGTCGAAATGCCCAAAAATTGAATGGAAAATACGTTTTTATATATTTTATTGGCTGGTATTGTGTATATTCCTTACCTTCATGCTGGTGTT</canonical_amplicon>
		<polymorphic_amplicon>ATTAAATTTTTCTGCATCTTCAAACAATGAGATATACAAAAACAAAATTTTCAGTTTATTTTTGACCATTCTCACAATTTCCAGGAGTGTGAAGCTCGGCTATCAAGTTTCCAATAACTTTATAAACGTTGACTTAGAAATCTTCACATAGCTCAAAAACTGGGAATCAAAAAAATTCCGTGGAAACAGAAATTTTGATCTAGGTCTGTTTTACATCTCTAAAAGTTTTCAAAACGCACGGAAACTTGRCCGCCGAGCAGCAGACTTCTGAAAACGGTCGAAATGCCCAAAAATTGAATGGAAAATACGTTTTTATATATTTTATTGGCTGGTATTGTGTATATTCCTTACCTTCATGCTGGTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24374</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>682898</contig_pos>
        <strand>+</strand>
        <context>CACGATGGGA[A/T]ACCGTATTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGATACTCCAGATGGTATAAGTGCTGCGTTGTATTATCATCACGATGGGA</left_flank>
        <right_flank>ACCGTATTTCTTTAAAAGTTGGTTTTTTGGTTATGACAATTGAATATCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATTGTATGGGTCACCTGTGAAGATCAGGAAAAGAACAAACTCCAATTACATTTGGAGATCAGAGCTATGTACGAGACCATTCTTGGATGCAGTGACTACTTTGAAAAATGGAACTGTGCTGGCATTCAGAGGTAAATGTCAAATAAGCTAAATTTGTATTATTTTTATTTTGTAACTATCAAATGTTTTATTGCAGGAAACATGTTCTTCGAGTTTAAAACGAATCGAAACCAGTTTAACCCCAAAAGAATCATCAAATTTTTCCCATTTGATGGACCACTAGAAGCTGTTACCACTGATCGACATGGAAATGTGTATTTCTTCAAGGTATTTACAATTTCATACTTACCTGCTAAAAATTATGATACAGAAAGACATATACTGGGTAATGACCAAATACGGTGATATGATGACAGGTTACCCGAAGAAAATATCAGCAGGATTGACCGATACTCCAGATGGTATAAGTGCTGCGTTGTATTATCATCACGATGGGAAACCGTATTTCTTTAAAAGTTGGTTTTTTGGTTATGACAATTGAATATCGAATTTCTAAGATTTTATCATTTGGAAAGTTCGACAGATCGGTGAAATTCATGATCGATCATCATTAGTACCGAGCAGTGCCGCATGTCTCGTTTTGACTTTTTCAGTAGGATCAGTAGGATGCATGGTCAAATTTAGAGTTTGGAAAATCTGAATTCTTCCAATGCTTTGAAAAGTTGGGATTACACAATACATTAATAAATGTATTAATTTATTGTAGTTGACAACTTTTTGTAAAATTTTCTATCTGATGATATATCGGCCCTTTTGTATCTGAAAATGTAACAACAACTCCAAGATGAGCACTGAAATGTTTACGGTTTGAGTGGGTTTTTATTAGAGGATATGCGGTATCTTGCTTTGTTGGGTTTCTACGGAACAGTTTCGTTCAGTTTACTCTGAAATTCTTCAAAAATTGAAAAATGACTGCTTTTTTCAAGACTTAAAGATTT</canonical>
            <polymorphic>AGATTGTATGGGTCACCTGTGAAGATCAGGAAAAGAACAAACTCCAATTACATTTGGAGATCAGAGCTATGTACGAGACCATTCTTGGATGCAGTGACTACTTTGAAAAATGGAACTGTGCTGGCATTCAGAGGTAAATGTCAAATAAGCTAAATTTGTATTATTTTTATTTTGTAACTATCAAATGTTTTATTGCAGGAAACATGTTCTTCGAGTTTAAAACGAATCGAAACCAGTTTAACCCCAAAAGAATCATCAAATTTTTCCCATTTGATGGACCACTAGAAGCTGTTACCACTGATCGACATGGAAATGTGTATTTCTTCAAGGTATTTACAATTTCATACTTACCTGCTAAAAATTATGATACAGAAAGACATATACTGGGTAATGACCAAATACGGTGATATGATGACAGGTTACCCGAAGAAAATATCAGCAGGATTGACCGATACTCCAGATGGTATAAGTGCTGCGTTGTATTATCATCACGATGGGAWACCGTATTTCTTTAAAAGTTGGTTTTTTGGTTATGACAATTGAATATCGAATTTCTAAGATTTTATCATTTGGAAAGTTCGACAGATCGGTGAAATTCATGATCGATCATCATTAGTACCGAGCAGTGCCGCATGTCTCGTTTTGACTTTTTCAGTAGGATCAGTAGGATGCATGGTCAAATTTAGAGTTTGGAAAATCTGAATTCTTCCAATGCTTTGAAAAGTTGGGATTACACAATACATTAATAAATGTATTAATTTATTGTAGTTGACAACTTTTTGTAAAATTTTCTATCTGATGATATATCGGCCCTTTTGTATCTGAAAATGTAACAACAACTCCAAGATGAGCACTGAAATGTTTACGGTTTGAGTGGGTTTTTATTAGAGGATATGCGGTATCTTGCTTTGTTGGGTTTCTACGGAACAGTTTCGTTCAGTTTACTCTGAAATTCTTCAAAAATTGAAAAATGACTGCTTTTTTCAAGACTTAAAGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCGATACTCCAGATGGTATAA</pcr_primer_p1>
		<pcr_primer_p2>TTTCCAAACTCTAAATTTGACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACCGATACTCCAGATGGTATAAGTGCTGCGTTGTATTATCATCACGATGGGAAACCGTATTTCTTTAAAAGTTGGTTTTTTGGTTATGACAATTGAATATCGAATTTCTAAGATTTTATCATTTGGAAAGTTCGACAGATCGGTGAAATTCATGATCGATCATCATTAGTACCGAGCAGTGCCGCATGTCTCGTTTTGACTTTTTCAGTAGGATCAGTAGGATGCATGGTCAAATTTAGAGTTTGGAAA</canonical_amplicon>
		<polymorphic_amplicon>ACCGATACTCCAGATGGTATAAGTGCTGCGTTGTATTATCATCACGATGGGAWACCGTATTTCTTTAAAAGTTGGTTTTTTGGTTATGACAATTGAATATCGAATTTCTAAGATTTTATCATTTGGAAAGTTCGACAGATCGGTGAAATTCATGATCGATCATCATTAGTACCGAGCAGTGCCGCATGTCTCGTTTTGACTTTTTCAGTAGGATCAGTAGGATGCATGGTCAAATTTAGAGTTTGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24375</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>684928</contig_pos>
        <strand></strand>
        <context>tttccaatcc[T/C]wttgaaaact</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTTTGGATCATTTCTGAAGCCTGGAGCTTGGCTGTCAAGTTTCCAATCC</left_flank>
        <right_flank>ATTGAAAACTTTGGAGGGCGTAACACAAACTTAGATTGAAAACGTTTCGC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGTCGATGTTTGAGGTGATGTCGATCATTTTTTCGATTATCATATCGGAAGTTGGAATGATTAATTGAAAACACCCTATTTTGATTAGCTCCTAGCGAAAACGTAACATTTCTTGATTACACCGGGTGACATCGCAGCATTTTGAGTATACGGTCACAACACTGGCCCTGTTGGTTTAGCCTTTCCATGGTGCTACTATCCTCCTTACGATGGTCTAAAAATTAACTTTGTTTAGTAATGAAATTATTAAAGAATAACGGGATCCTAAAGGTGTATTAAAACATCTTCGAATGCATTTTCTCCGGTTATTAGTCGTTTCAATGCTCAAAATAATAATTAGGATTTCAACTTTTTTAAAAATTTACTTTCCAAATGTTAAAAACAAGGAATGCACAAATTGCCGATCAATAAACTATACAAAAACATATTTTCAGTTGATTTTCAGCCATTTTGGATCATTTCTGAAGCCTGGAGCTTGGCTGTCAAGTTTCCAATCCTATTGAAAACTTTGGAGGGCGTAACACAAACTTAGATTGAAAACGTTTCGCGCACAGAATTTTTCGAAAAATCCAAGTGTTTCAGCTATTTAATGGTTTTTAGAAGAAGTGACCCTTTTTCGTACTGAAAACGTAAAAAAGCAGGTTTTCTTAAAAAACCGGCATATAGCTAAAAAAACTAGGGCATTTCCAAAATTTTTGTAAATCCCAAGTTCTAGATTTGTTTTAGACCCTCCAGAATTTTCTAAGTGGTTTGAAACTTGAGAGAGAAACTCCAGACTCTTGAACGTGTTCAAAATCGACTGAAAACACATTTTGTACATATACGTTATTGATTGCCACTGTTTAGTGTTGGTGAATGTGAAGTTTTCCTTATTAAAAACTTTCAAAAAATGCAAGAGCTTCTGAAAGTTTAATCGAGTGAGACTCATGAAAGCAATTATCCTCGTCGAAATCTGTTGCGAAATATTCATCGAATCTCTTCGACATCCCCATAACTCA</canonical>
            <polymorphic>TGTGTCGATGTTTGAGGTGATGTCGATCATTTTTTCGATTATCATATCGGAAGTTGGAATGATTAATTGAAAACACCCTATTTTGATTAGCTCCTAGCGAAAACGTAACATTTCTTGATTACACCGGGTGACATCGCAGCATTTTGAGTATACGGTCACAACACTGGCCCTGTTGGTTTAGCCTTTCCATGGTGCTACTATCCTCCTTACGATGGTCTAAAAATTAACTTTGTTTAGTAATGAAATTATTAAAGAATAACGGGATCCTAAAGGTGTATTAAAACATCTTCGAATGCATTTTCTCCGGTTATTAGTCGTTTCAATGCTCAAAATAATAATTAGGATTTCAACTTTTTTAAAAATTTACTTTCCAAATGTTAAAAACAAGGAATGCACAAATTGCCGATCAATAAACTATACAAAAACATATTTTCAGTTGATTTTCAGCCATTTTGGATCATTTCTGAAGCCTGGAGCTTGGCTGTCAAGTTTCCAATCCYATTGAAAACTTTGGAGGGCGTAACACAAACTTAGATTGAAAACGTTTCGCGCACAGAATTTTTCGAAAAATCCAAGTGTTTCAGCTATTTAATGGTTTTTAGAAGAAGTGACCCTTTTTCGTACTGAAAACGTAAAAAAGCAGGTTTTCTTAAAAAACCGGCATATAGCTAAAAAAACTAGGGCATTTCCAAAATTTTTGTAAATCCCAAGTTCTAGATTTGTTTTAGACCCTCCAGAATTTTCTAAGTGGTTTGAAACTTGAGAGAGAAACTCCAGACTCTTGAACGTGTTCAAAATCGACTGAAAACACATTTTGTACATATACGTTATTGATTGCCACTGTTTAGTGTTGGTGAATGTGAAGTTTTCCTTATTAAAAACTTTCAAAAAATGCAAGAGCTTCTGAAAGTTTAATCGAGTGAGACTCATGAAAGCAATTATCCTCGTCGAAATCTGTTGCGAAATATTCATCGAATCTCTTCGACATCCCCATAACTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACAAGGAATGCACAAAT</pcr_primer_p1>
		<pcr_primer_p2>AACTTCACATTCACCAACACTA</pcr_primer_p2>
		<pcr_amplicon_size>487</pcr_amplicon_size>
		<canonical_amplicon>AAAACAAGGAATGCACAAATTGCCGATCAATAAACTATACAAAAACATATTTTCAGTTGATTTTCAGCCATTTTGGATCATTTCTGAAGCCTGGAGCTTGGCTGTCAAGTTTCCAATCCTATTGAAAACTTTGGAGGGCGTAACACAAACTTAGATTGAAAACGTTTCGCGCACAGAATTTTTCGAAAAATCCAAGTGTTTCAGCTATTTAATGGTTTTTAGAAGAAGTGACCCTTTTTCGTACTGAAAACGTAAAAAAGCAGGTTTTCTTAAAAAACCGGCATATAGCTAAAAAAACTAGGGCATTTCCAAAATTTTTGTAAATCCCAAGTTCTAGATTTGTTTTAGACCCTCCAGAATTTTCTAAGTGGTTTGAAACTTGAGAGAGAAACTCCAGACTCTTGAACGTGTTCAAAATCGACTGAAAACACATTTTGTACATATACGTTATTGATTGCCACTGTTTAGTGTTGGTGAATGTGAAGTT</canonical_amplicon>
		<polymorphic_amplicon>AAAACAAGGAATGCACAAATTGCCGATCAATAAACTATACAAAAACATATTTTCAGTTGATTTTCAGCCATTTTGGATCATTTCTGAAGCCTGGAGCTTGGCTGTCAAGTTTCCAATCCYATTGAAAACTTTGGAGGGCGTAACACAAACTTAGATTGAAAACGTTTCGCGCACAGAATTTTTCGAAAAATCCAAGTGTTTCAGCTATTTAATGGTTTTTAGAAGAAGTGACCCTTTTTCGTACTGAAAACGTAAAAAAGCAGGTTTTCTTAAAAAACCGGCATATAGCTAAAAAAACTAGGGCATTTCCAAAATTTTTGTAAATCCCAAGTTCTAGATTTGTTTTAGACCCTCCAGAATTTTCTAAGTGGTTTGAAACTTGAGAGAGAAACTCCAGACTCTTGAACGTGTTCAAAATCGACTGAAAACACATTTTGTACATATACGTTATTGATTGCCACTGTTTAGTGTTGGTGAATGTGAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24376</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>684929</contig_pos>
        <strand></strand>
        <context>ttccaatccy[A/T]ttgaaaactt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTGGATCATTTCTGAAGCCTGGAGCTTGGCTGTCAAGTTTCCAATCCT</left_flank>
        <right_flank>TTGAAAACTTTGGAGGGCGTAACACAAACTTAGATTGAAAACGTTTCGCG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTCGATGTTTGAGGTGATGTCGATCATTTTTTCGATTATCATATCGGAAGTTGGAATGATTAATTGAAAACACCCTATTTTGATTAGCTCCTAGCGAAAACGTAACATTTCTTGATTACACCGGGTGACATCGCAGCATTTTGAGTATACGGTCACAACACTGGCCCTGTTGGTTTAGCCTTTCCATGGTGCTACTATCCTCCTTACGATGGTCTAAAAATTAACTTTGTTTAGTAATGAAATTATTAAAGAATAACGGGATCCTAAAGGTGTATTAAAACATCTTCGAATGCATTTTCTCCGGTTATTAGTCGTTTCAATGCTCAAAATAATAATTAGGATTTCAACTTTTTTAAAAATTTACTTTCCAAATGTTAAAAACAAGGAATGCACAAATTGCCGATCAATAAACTATACAAAAACATATTTTCAGTTGATTTTCAGCCATTTTGGATCATTTCTGAAGCCTGGAGCTTGGCTGTCAAGTTTCCAATCCTATTGAAAACTTTGGAGGGCGTAACACAAACTTAGATTGAAAACGTTTCGCGCACAGAATTTTTCGAAAAATCCAAGTGTTTCAGCTATTTAATGGTTTTTAGAAGAAGTGACCCTTTTTCGTACTGAAAACGTAAAAAAGCAGGTTTTCTTAAAAAACCGGCATATAGCTAAAAAAACTAGGGCATTTCCAAAATTTTTGTAAATCCCAAGTTCTAGATTTGTTTTAGACCCTCCAGAATTTTCTAAGTGGTTTGAAACTTGAGAGAGAAACTCCAGACTCTTGAACGTGTTCAAAATCGACTGAAAACACATTTTGTACATATACGTTATTGATTGCCACTGTTTAGTGTTGGTGAATGTGAAGTTTTCCTTATTAAAAACTTTCAAAAAATGCAAGAGCTTCTGAAAGTTTAATCGAGTGAGACTCATGAAAGCAATTATCCTCGTCGAAATCTGTTGCGAAATATTCATCGAATCTCTTCGACATCCCCATAACTCAC</canonical>
            <polymorphic>GTGTCGATGTTTGAGGTGATGTCGATCATTTTTTCGATTATCATATCGGAAGTTGGAATGATTAATTGAAAACACCCTATTTTGATTAGCTCCTAGCGAAAACGTAACATTTCTTGATTACACCGGGTGACATCGCAGCATTTTGAGTATACGGTCACAACACTGGCCCTGTTGGTTTAGCCTTTCCATGGTGCTACTATCCTCCTTACGATGGTCTAAAAATTAACTTTGTTTAGTAATGAAATTATTAAAGAATAACGGGATCCTAAAGGTGTATTAAAACATCTTCGAATGCATTTTCTCCGGTTATTAGTCGTTTCAATGCTCAAAATAATAATTAGGATTTCAACTTTTTTAAAAATTTACTTTCCAAATGTTAAAAACAAGGAATGCACAAATTGCCGATCAATAAACTATACAAAAACATATTTTCAGTTGATTTTCAGCCATTTTGGATCATTTCTGAAGCCTGGAGCTTGGCTGTCAAGTTTCCAATCCTWTTGAAAACTTTGGAGGGCGTAACACAAACTTAGATTGAAAACGTTTCGCGCACAGAATTTTTCGAAAAATCCAAGTGTTTCAGCTATTTAATGGTTTTTAGAAGAAGTGACCCTTTTTCGTACTGAAAACGTAAAAAAGCAGGTTTTCTTAAAAAACCGGCATATAGCTAAAAAAACTAGGGCATTTCCAAAATTTTTGTAAATCCCAAGTTCTAGATTTGTTTTAGACCCTCCAGAATTTTCTAAGTGGTTTGAAACTTGAGAGAGAAACTCCAGACTCTTGAACGTGTTCAAAATCGACTGAAAACACATTTTGTACATATACGTTATTGATTGCCACTGTTTAGTGTTGGTGAATGTGAAGTTTTCCTTATTAAAAACTTTCAAAAAATGCAAGAGCTTCTGAAAGTTTAATCGAGTGAGACTCATGAAAGCAATTATCCTCGTCGAAATCTGTTGCGAAATATTCATCGAATCTCTTCGACATCCCCATAACTCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACAAGGAATGCACAAAT</pcr_primer_p1>
		<pcr_primer_p2>AACTTCACATTCACCAACACTA</pcr_primer_p2>
		<pcr_amplicon_size>487</pcr_amplicon_size>
		<canonical_amplicon>AAAACAAGGAATGCACAAATTGCCGATCAATAAACTATACAAAAACATATTTTCAGTTGATTTTCAGCCATTTTGGATCATTTCTGAAGCCTGGAGCTTGGCTGTCAAGTTTCCAATCCTATTGAAAACTTTGGAGGGCGTAACACAAACTTAGATTGAAAACGTTTCGCGCACAGAATTTTTCGAAAAATCCAAGTGTTTCAGCTATTTAATGGTTTTTAGAAGAAGTGACCCTTTTTCGTACTGAAAACGTAAAAAAGCAGGTTTTCTTAAAAAACCGGCATATAGCTAAAAAAACTAGGGCATTTCCAAAATTTTTGTAAATCCCAAGTTCTAGATTTGTTTTAGACCCTCCAGAATTTTCTAAGTGGTTTGAAACTTGAGAGAGAAACTCCAGACTCTTGAACGTGTTCAAAATCGACTGAAAACACATTTTGTACATATACGTTATTGATTGCCACTGTTTAGTGTTGGTGAATGTGAAGTT</canonical_amplicon>
		<polymorphic_amplicon>AAAACAAGGAATGCACAAATTGCCGATCAATAAACTATACAAAAACATATTTTCAGTTGATTTTCAGCCATTTTGGATCATTTCTGAAGCCTGGAGCTTGGCTGTCAAGTTTCCAATCCTWTTGAAAACTTTGGAGGGCGTAACACAAACTTAGATTGAAAACGTTTCGCGCACAGAATTTTTCGAAAAATCCAAGTGTTTCAGCTATTTAATGGTTTTTAGAAGAAGTGACCCTTTTTCGTACTGAAAACGTAAAAAAGCAGGTTTTCTTAAAAAACCGGCATATAGCTAAAAAAACTAGGGCATTTCCAAAATTTTTGTAAATCCCAAGTTCTAGATTTGTTTTAGACCCTCCAGAATTTTCTAAGTGGTTTGAAACTTGAGAGAGAAACTCCAGACTCTTGAACGTGTTCAAAATCGACTGAAAACACATTTTGTACATATACGTTATTGATTGCCACTGTTTAGTGTTGGTGAATGTGAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24377</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>685080</contig_pos>
        <strand></strand>
        <context>aggttttctt[A/C]aaaaaccggc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAGAAGTGACCCTTTTTCGTACTGAAAACGTAAAAAAGCAGGTTTTCTT</left_flank>
        <right_flank>AAAAACCGGCATATAGCTAAAAAAACTAGGGCATTTCCAAAATTTTTGTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGTCACAACACTGGCCCTGTTGGTTTAGCCTTTCCATGGTGCTACTATCCTCCTTACGATGGTCTAAAAATTAACTTTGTTTAGTAATGAAATTATTAAAGAATAACGGGATCCTAAAGGTGTATTAAAACATCTTCGAATGCATTTTCTCCGGTTATTAGTCGTTTCAATGCTCAAAATAATAATTAGGATTTCAACTTTTTTAAAAATTTACTTTCCAAATGTTAAAAACAAGGAATGCACAAATTGCCGATCAATAAACTATACAAAAACATATTTTCAGTTGATTTTCAGCCATTTTGGATCATTTCTGAAGCCTGGAGCTTGGCTGTCAAGTTTCCAATCCTATTGAAAACTTTGGAGGGCGTAACACAAACTTAGATTGAAAACGTTTCGCGCACAGAATTTTTCGAAAAATCCAAGTGTTTCAGCTATTTAATGGTTTTTAGAAGAAGTGACCCTTTTTCGTACTGAAAACGTAAAAAAGCAGGTTTTCTTAAAAAACCGGCATATAGCTAAAAAAACTAGGGCATTTCCAAAATTTTTGTAAATCCCAAGTTCTAGATTTGTTTTAGACCCTCCAGAATTTTCTAAGTGGTTTGAAACTTGAGAGAGAAACTCCAGACTCTTGAACGTGTTCAAAATCGACTGAAAACACATTTTGTACATATACGTTATTGATTGCCACTGTTTAGTGTTGGTGAATGTGAAGTTTTCCTTATTAAAAACTTTCAAAAAATGCAAGAGCTTCTGAAAGTTTAATCGAGTGAGACTCATGAAAGCAATTATCCTCGTCGAAATCTGTTGCGAAATATTCATCGAATCTCTTCGACATCCCCATAACTCACCGTTAGACACGTCGCGGACAGGAAGAACTCAGGCCTAAGTTGCCCATGCCATCGGGAAGAACCCTGAAAAAAATCAATATTAGTGAGTCATCATCACCATGAACAATCACTATAAAGTTGAAAAAATGCTGGCAAAAAGAGATACACAGAG</canonical>
            <polymorphic>CGGTCACAACACTGGCCCTGTTGGTTTAGCCTTTCCATGGTGCTACTATCCTCCTTACGATGGTCTAAAAATTAACTTTGTTTAGTAATGAAATTATTAAAGAATAACGGGATCCTAAAGGTGTATTAAAACATCTTCGAATGCATTTTCTCCGGTTATTAGTCGTTTCAATGCTCAAAATAATAATTAGGATTTCAACTTTTTTAAAAATTTACTTTCCAAATGTTAAAAACAAGGAATGCACAAATTGCCGATCAATAAACTATACAAAAACATATTTTCAGTTGATTTTCAGCCATTTTGGATCATTTCTGAAGCCTGGAGCTTGGCTGTCAAGTTTCCAATCCTATTGAAAACTTTGGAGGGCGTAACACAAACTTAGATTGAAAACGTTTCGCGCACAGAATTTTTCGAAAAATCCAAGTGTTTCAGCTATTTAATGGTTTTTAGAAGAAGTGACCCTTTTTCGTACTGAAAACGTAAAAAAGCAGGTTTTCTTMAAAAACCGGCATATAGCTAAAAAAACTAGGGCATTTCCAAAATTTTTGTAAATCCCAAGTTCTAGATTTGTTTTAGACCCTCCAGAATTTTCTAAGTGGTTTGAAACTTGAGAGAGAAACTCCAGACTCTTGAACGTGTTCAAAATCGACTGAAAACACATTTTGTACATATACGTTATTGATTGCCACTGTTTAGTGTTGGTGAATGTGAAGTTTTCCTTATTAAAAACTTTCAAAAAATGCAAGAGCTTCTGAAAGTTTAATCGAGTGAGACTCATGAAAGCAATTATCCTCGTCGAAATCTGTTGCGAAATATTCATCGAATCTCTTCGACATCCCCATAACTCACCGTTAGACACGTCGCGGACAGGAAGAACTCAGGCCTAAGTTGCCCATGCCATCGGGAAGAACCCTGAAAAAAATCAATATTAGTGAGTCATCATCACCATGAACAATCACTATAAAGTTGAAAAAATGCTGGCAAAAAGAGATACACAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>240 225 211 78 72 61 37 29 25 22</canonical_bands>
                <polymorphic_bands>286 240 211 78 72 37 29 25 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACAAGGAATGCACAAAT</pcr_primer_p1>
		<pcr_primer_p2>AACTTCACATTCACCAACACTA</pcr_primer_p2>
		<pcr_amplicon_size>487</pcr_amplicon_size>
		<canonical_amplicon>AAAACAAGGAATGCACAAATTGCCGATCAATAAACTATACAAAAACATATTTTCAGTTGATTTTCAGCCATTTTGGATCATTTCTGAAGCCTGGAGCTTGGCTGTCAAGTTTCCAATCCTATTGAAAACTTTGGAGGGCGTAACACAAACTTAGATTGAAAACGTTTCGCGCACAGAATTTTTCGAAAAATCCAAGTGTTTCAGCTATTTAATGGTTTTTAGAAGAAGTGACCCTTTTTCGTACTGAAAACGTAAAAAAGCAGGTTTTCTTAAAAAACCGGCATATAGCTAAAAAAACTAGGGCATTTCCAAAATTTTTGTAAATCCCAAGTTCTAGATTTGTTTTAGACCCTCCAGAATTTTCTAAGTGGTTTGAAACTTGAGAGAGAAACTCCAGACTCTTGAACGTGTTCAAAATCGACTGAAAACACATTTTGTACATATACGTTATTGATTGCCACTGTTTAGTGTTGGTGAATGTGAAGTT</canonical_amplicon>
		<polymorphic_amplicon>AAAACAAGGAATGCACAAATTGCCGATCAATAAACTATACAAAAACATATTTTCAGTTGATTTTCAGCCATTTTGGATCATTTCTGAAGCCTGGAGCTTGGCTGTCAAGTTTCCAATCCTATTGAAAACTTTGGAGGGCGTAACACAAACTTAGATTGAAAACGTTTCGCGCACAGAATTTTTCGAAAAATCCAAGTGTTTCAGCTATTTAATGGTTTTTAGAAGAAGTGACCCTTTTTCGTACTGAAAACGTAAAAAAGCAGGTTTTCTTMAAAAACCGGCATATAGCTAAAAAAACTAGGGCATTTCCAAAATTTTTGTAAATCCCAAGTTCTAGATTTGTTTTAGACCCTCCAGAATTTTCTAAGTGGTTTGAAACTTGAGAGAGAAACTCCAGACTCTTGAACGTGTTCAAAATCGACTGAAAACACATTTTGTACATATACGTTATTGATTGCCACTGTTTAGTGTTGGTGAATGTGAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24378</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>702085</contig_pos>
        <strand>+</strand>
        <context>AAGAAAACTT[C/T]TTTTTTTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAATTACAACAAAAACAGTATTAAAGGATTTTCAGAGTGAAAGAAAACTT</left_flank>
        <right_flank>TTTTTTTTTCAAACATAAAAACCCGTTTTTAACGTGATATAAGGAACAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTATTACTTTTCCATACTAAGTTAGAAAAAACTAAAACTTGGATAGGGAATAGGAACTCACCAAGAAGGAATTGTCGATTCATCATAGCTGGCAGCTCAAATGTCGAATGACTTCTAGCTTCTTTCAAAGGCTCTTATGAAAGGTGTGTGGGGGCTGGGCTCACTAGACTCCGCCCCATTTCTAGCCCCAAACGTAACAATAATACAATTTCAGCTCGACACGTCATGTACTACCGTAGTAGAGCCGTCCTGTGAATTGAATTACACACCTGGAGAAGAAAAAGTTTGGTTGGCGTAGGAAACTTTTCATTCAATTGTGTCACTTATCACAAGGCTTTTAGGCTTTTGACACCACTGGAAAAAGGAAAAAAAAAACTAGAAATAAGAATAAAATGAATGTTGGCAACTGACAGATAAACTATGAGAGATCTAGACAAGACAAGGTATGGAATTACAACAAAAACAGTATTAAAGGATTTTCAGAGTGAAAGAAAACTTCTTTTTTTTTCAAACATAAAAACCCGTTTTTAACGTGATATAAGGAACAGAATGAAAGGAAAACTGGGGAAGAAAAGAGTATTTTCCAGGCATTAGAAAATCGAATCGGGTGGAAATTCGAAATGATGACAGTGATTAATTTAAATTCCATGAGGTAGTTTGTGGATGGCTATACATTTTATGCTATACATTTTATGCTATACATATATTCAATAAAGGAATTTCTAAAAGTCTCTATATGCAAAAAATGAAACAACTAGGATATTCTAGAAATAGGAAAAATCCGGATAACTCTTCGAAATCTCCATTGTAAACGGATGAGGCTGCATCAACTCAAAGGTTTCGATGGTACATAACGTTTCTCGCTTGAAGGCAGCAACTTTCTGAAATTGTTTATATTTGGATCATGTTTTTTGATACAGGATTTGCTTTGATATTTTTTTTCAAAGATGTAGTGGGTGTTCAAAACCAGTGAACCATCAAATTATATTGGCGTGGACA</canonical>
            <polymorphic>TCTATTACTTTTCCATACTAAGTTAGAAAAAACTAAAACTTGGATAGGGAATAGGAACTCACCAAGAAGGAATTGTCGATTCATCATAGCTGGCAGCTCAAATGTCGAATGACTTCTAGCTTCTTTCAAAGGCTCTTATGAAAGGTGTGTGGGGGCTGGGCTCACTAGACTCCGCCCCATTTCTAGCCCCAAACGTAACAATAATACAATTTCAGCTCGACACGTCATGTACTACCGTAGTAGAGCCGTCCTGTGAATTGAATTACACACCTGGAGAAGAAAAAGTTTGGTTGGCGTAGGAAACTTTTCATTCAATTGTGTCACTTATCACAAGGCTTTTAGGCTTTTGACACCACTGGAAAAAGGAAAAAAAAAACTAGAAATAAGAATAAAATGAATGTTGGCAACTGACAGATAAACTATGAGAGATCTAGACAAGACAAGGTATGGAATTACAACAAAAACAGTATTAAAGGATTTTCAGAGTGAAAGAAAACTTYTTTTTTTTTCAAACATAAAAACCCGTTTTTAACGTGATATAAGGAACAGAATGAAAGGAAAACTGGGGAAGAAAAGAGTATTTTCCAGGCATTAGAAAATCGAATCGGGTGGAAATTCGAAATGATGACAGTGATTAATTTAAATTCCATGAGGTAGTTTGTGGATGGCTATACATTTTATGCTATACATTTTATGCTATACATATATTCAATAAAGGAATTTCTAAAAGTCTCTATATGCAAAAAATGAAACAACTAGGATATTCTAGAAATAGGAAAAATCCGGATAACTCTTCGAAATCTCCATTGTAAACGGATGAGGCTGCATCAACTCAAAGGTTTCGATGGTACATAACGTTTCTCGCTTGAAGGCAGCAACTTTCTGAAATTGTTTATATTTGGATCATGTTTTTTGATACAGGATTTGCTTTGATATTTTTTTTCAAAGATGTAGTGGGTGTTCAAAACCAGTGAACCATCAAATTATATTGGCGTGGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCTAGACAAGACAAGGTATGG</pcr_primer_p1>
		<pcr_primer_p2>AATGTATAGCCATCCACAAACTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCTAGACAAGACAAGGTATGGAATTACAACAAAAACAGTATTAAAGGATTTTCAGAGTGAAAGAAAACTTCTTTTTTTTTCAAACATAAAAACCCGTTTTTAACGTGATATAAGGAACAGAATGAAAGGAAAACTGGGGAAGAAAAGAGTATTTTCCAGGCATTAGAAAATCGAATCGGGTGGAAATTCGAAATGATGACAGTGATTAATTTAAATTCCATGAGGTAGTTTGTGGATGGCTATACATT</canonical_amplicon>
		<polymorphic_amplicon>GATCTAGACAAGACAAGGTATGGAATTACAACAAAAACAGTATTAAAGGATTTTCAGAGTGAAAGAAAACTTYTTTTTTTTTCAAACATAAAAACCCGTTTTTAACGTGATATAAGGAACAGAATGAAAGGAAAACTGGGGAAGAAAAGAGTATTTTCCAGGCATTAGAAAATCGAATCGGGTGGAAATTCGAAATGATGACAGTGATTAATTTAAATTCCATGAGGTAGTTTGTGGATGGCTATACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24379</snp_id>
        <super_contig>c000501395.Contig1</super_contig>
        <contig_pos>702154</contig_pos>
        <strand>+</strand>
        <context>AAAACTGGGG[A/G]AGAAAAGAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACCCGTTTTTAACGTGATATAAGGAACAGAATGAAAGGAAAACTGGGG</left_flank>
        <right_flank>AGAAAAGAGTATTTTCCAGGCATTAGAAAATCGAATCGGGTGGAAATTCG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTGTCGATTCATCATAGCTGGCAGCTCAAATGTCGAATGACTTCTAGCTTCTTTCAAAGGCTCTTATGAAAGGTGTGTGGGGGCTGGGCTCACTAGACTCCGCCCCATTTCTAGCCCCAAACGTAACAATAATACAATTTCAGCTCGACACGTCATGTACTACCGTAGTAGAGCCGTCCTGTGAATTGAATTACACACCTGGAGAAGAAAAAGTTTGGTTGGCGTAGGAAACTTTTCATTCAATTGTGTCACTTATCACAAGGCTTTTAGGCTTTTGACACCACTGGAAAAAGGAAAAAAAAAACTAGAAATAAGAATAAAATGAATGTTGGCAACTGACAGATAAACTATGAGAGATCTAGACAAGACAAGGTATGGAATTACAACAAAAACAGTATTAAAGGATTTTCAGAGTGAAAGAAAACTTCTTTTTTTTTCAAACATAAAAACCCGTTTTTAACGTGATATAAGGAACAGAATGAAAGGAAAACTGGGGAAGAAAAGAGTATTTTCCAGGCATTAGAAAATCGAATCGGGTGGAAATTCGAAATGATGACAGTGATTAATTTAAATTCCATGAGGTAGTTTGTGGATGGCTATACATTTTATGCTATACATTTTATGCTATACATATATTCAATAAAGGAATTTCTAAAAGTCTCTATATGCAAAAAATGAAACAACTAGGATATTCTAGAAATAGGAAAAATCCGGATAACTCTTCGAAATCTCCATTGTAAACGGATGAGGCTGCATCAACTCAAAGGTTTCGATGGTACATAACGTTTCTCGCTTGAAGGCAGCAACTTTCTGAAATTGTTTATATTTGGATCATGTTTTTTGATACAGGATTTGCTTTGATATTTTTTTTCAAAGATGTAGTGGGTGTTCAAAACCAGTGAACCATCAAATTATATTGGCGTGGACAACGATATATCAAAAAAAAAATACCACAGTGGGCGATAATTTTAAATGAGCTACGCAAGTGGGATGGTTT</canonical>
            <polymorphic>GAATTGTCGATTCATCATAGCTGGCAGCTCAAATGTCGAATGACTTCTAGCTTCTTTCAAAGGCTCTTATGAAAGGTGTGTGGGGGCTGGGCTCACTAGACTCCGCCCCATTTCTAGCCCCAAACGTAACAATAATACAATTTCAGCTCGACACGTCATGTACTACCGTAGTAGAGCCGTCCTGTGAATTGAATTACACACCTGGAGAAGAAAAAGTTTGGTTGGCGTAGGAAACTTTTCATTCAATTGTGTCACTTATCACAAGGCTTTTAGGCTTTTGACACCACTGGAAAAAGGAAAAAAAAAACTAGAAATAAGAATAAAATGAATGTTGGCAACTGACAGATAAACTATGAGAGATCTAGACAAGACAAGGTATGGAATTACAACAAAAACAGTATTAAAGGATTTTCAGAGTGAAAGAAAACTTCTTTTTTTTTCAAACATAAAAACCCGTTTTTAACGTGATATAAGGAACAGAATGAAAGGAAAACTGGGGRAGAAAAGAGTATTTTCCAGGCATTAGAAAATCGAATCGGGTGGAAATTCGAAATGATGACAGTGATTAATTTAAATTCCATGAGGTAGTTTGTGGATGGCTATACATTTTATGCTATACATTTTATGCTATACATATATTCAATAAAGGAATTTCTAAAAGTCTCTATATGCAAAAAATGAAACAACTAGGATATTCTAGAAATAGGAAAAATCCGGATAACTCTTCGAAATCTCCATTGTAAACGGATGAGGCTGCATCAACTCAAAGGTTTCGATGGTACATAACGTTTCTCGCTTGAAGGCAGCAACTTTCTGAAATTGTTTATATTTGGATCATGTTTTTTGATACAGGATTTGCTTTGATATTTTTTTTCAAAGATGTAGTGGGTGTTCAAAACCAGTGAACCATCAAATTATATTGGCGTGGACAACGATATATCAAAAAAAAAATACCACAGTGGGCGATAATTTTAAATGAGCTACGCAAGTGGGATGGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCTAGACAAGACAAGGTATGG</pcr_primer_p1>
		<pcr_primer_p2>AATGTATAGCCATCCACAAACTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCTAGACAAGACAAGGTATGGAATTACAACAAAAACAGTATTAAAGGATTTTCAGAGTGAAAGAAAACTTCTTTTTTTTTCAAACATAAAAACCCGTTTTTAACGTGATATAAGGAACAGAATGAAAGGAAAACTGGGGAAGAAAAGAGTATTTTCCAGGCATTAGAAAATCGAATCGGGTGGAAATTCGAAATGATGACAGTGATTAATTTAAATTCCATGAGGTAGTTTGTGGATGGCTATACATT</canonical_amplicon>
		<polymorphic_amplicon>GATCTAGACAAGACAAGGTATGGAATTACAACAAAAACAGTATTAAAGGATTTTCAGAGTGAAAGAAAACTTCTTTTTTTTTCAAACATAAAAACCCGTTTTTAACGTGATATAAGGAACAGAATGAAAGGAAAACTGGGGRAGAAAAGAGTATTTTCCAGGCATTAGAAAATCGAATCGGGTGGAAATTCGAAATGATGACAGTGATTAATTTAAATTCCATGAGGTAGTTTGTGGATGGCTATACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24380</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>23864</contig_pos>
        <strand>+</strand>
        <context>CCATGTCCAC[A/C]TATCATTCCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATAATTACTTTCAGAAATTAGCTTTGGCATGATCATGGATCCATGTCCAC</left_flank>
        <right_flank>TATCATTCCTTCTGAGAACATCCAATTTTATCAAGGCTCACCAAACCCTT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCACCAGCGAAGTTCCGAGCACCGGTGGAGAACCAGCGGAGTGGGGTGGAGGACACTGGAGGGTAGCGGATGACCTAACTAACAGTGAACGTCCGAGCACCAGTGAAAAACCGAGCGCCAGTGAATTACAATCACTTCCGAACAACATTACAAAAGAATTCCTACAAAAAAGAAATAAGGGTAAAACTACAGGACTTGTTGGGTCTGACGAAACTGACATTTCAGAAATGTACGATGCTCTATTTGAATGTTGCGAAGCTATGGAAAAAACCAAACTGGATGTTGAACAGTGTGTTGAACAGAGCCAAGCGTCTGGTGTTCCACAAACCGCAGAGGAAATCGTCTTAAACGAGGATTACGCTAGAAAATTGGCCTGGCAGCAGTATTGTTTGACGTACAATTACTATATGGGTCATGATAGTTAGTTTCATCGTCCAACTTTGTTCAAAATAATTACTTTCAGAAATTAGCTTTGGCATGATCATGGATCCATGTCCACATATCATTCCTTCTGAGAACATCCAATTTTATCAAGGCTCACCAAACCCTTCAAGCGGTTTTATATATACATCCTGCTATGAGCTCGAAAAGGTTCGAATTGAAAGCAACAAGAATGCTCACGAGAACGAGAAACTGAAAATCGAGATCCAGAAATTGGAGAAGGAAGTTCAACGGCTTACTGGAAAGGTACCTGAGCAACCGAAGGAGCAGACAAGTGGAGGTTGGAAGAACAAGAACAAGAAGAAGAACAAAAAGAAATGATTCGTTTCTGATATCTCAAACTTCATGATAAATAATTGTTGCTGCATTTTATATATATATATATTGTATCGCGGGGTGGTTTCGCGTATTCAAAAAAAAATCTTCAAAACACAGAAAAAATTTTCCTATTTTGTCAAATTTATTTTTCTTCTTCAAAATCATTTTCTATAGATGATGTCATTTTTCTAATTTCTTCATTTGCTATCAACGTTCTTAATTTAATTGTATTATTGAAAAT</canonical>
            <polymorphic>GCACCAGCGAAGTTCCGAGCACCGGTGGAGAACCAGCGGAGTGGGGTGGAGGACACTGGAGGGTAGCGGATGACCTAACTAACAGTGAACGTCCGAGCACCAGTGAAAAACCGAGCGCCAGTGAATTACAATCACTTCCGAACAACATTACAAAAGAATTCCTACAAAAAAGAAATAAGGGTAAAACTACAGGACTTGTTGGGTCTGACGAAACTGACATTTCAGAAATGTACGATGCTCTATTTGAATGTTGCGAAGCTATGGAAAAAACCAAACTGGATGTTGAACAGTGTGTTGAACAGAGCCAAGCGTCTGGTGTTCCACAAACCGCAGAGGAAATCGTCTTAAACGAGGATTACGCTAGAAAATTGGCCTGGCAGCAGTATTGTTTGACGTACAATTACTATATGGGTCATGATAGTTAGTTTCATCGTCCAACTTTGTTCAAAATAATTACTTTCAGAAATTAGCTTTGGCATGATCATGGATCCATGTCCACMTATCATTCCTTCTGAGAACATCCAATTTTATCAAGGCTCACCAAACCCTTCAAGCGGTTTTATATATACATCCTGCTATGAGCTCGAAAAGGTTCGAATTGAAAGCAACAAGAATGCTCACGAGAACGAGAAACTGAAAATCGAGATCCAGAAATTGGAGAAGGAAGTTCAACGGCTTACTGGAAAGGTACCTGAGCAACCGAAGGAGCAGACAAGTGGAGGTTGGAAGAACAAGAACAAGAAGAAGAACAAAAAGAAATGATTCGTTTCTGATATCTCAAACTTCATGATAAATAATTGTTGCTGCATTTTATATATATATATATTGTATCGCGGGGTGGTTTCGCGTATTCAAAAAAAAATCTTCAAAACACAGAAAAAATTTTCCTATTTTGTCAAATTTATTTTTCTTCTTCAAAATCATTTTCTATAGATGATGTCATTTTTCTAATTTCTTCATTTGCTATCAACGTTCTTAATTTAATTGTATTATTGAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATAGTTAGTTTCATCGTCCA</pcr_primer_p1>
		<pcr_primer_p2>CTTCTCCAATTTCTGGATCTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGATAGTTAGTTTCATCGTCCAACTTTGTTCAAAATAATTACTTTCAGAAATTAGCTTTGGCATGATCATGGATCCATGTCCACATATCATTCCTTCTGAGAACATCCAATTTTATCAAGGCTCACCAAACCCTTCAAGCGGTTTTATATATACATCCTGCTATGAGCTCGAAAAGGTTCGAATTGAAAGCAACAAGAATGCTCACGAGAACGAGAAACTGAAAATCGAGATCCAGAAATTGGAGAAG</canonical_amplicon>
		<polymorphic_amplicon>ATGATAGTTAGTTTCATCGTCCAACTTTGTTCAAAATAATTACTTTCAGAAATTAGCTTTGGCATGATCATGGATCCATGTCCACMTATCATTCCTTCTGAGAACATCCAATTTTATCAAGGCTCACCAAACCCTTCAAGCGGTTTTATATATACATCCTGCTATGAGCTCGAAAAGGTTCGAATTGAAAGCAACAAGAATGCTCACGAGAACGAGAAACTGAAAATCGAGATCCAGAAATTGGAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24381</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>45294</contig_pos>
        <strand>+</strand>
        <context>TGGATTGGGA[A/T]CTATTGTGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCAAATATATAGGGGCATTAGGTGCACTCAGCATTGATGTGGATTGGGA</left_flank>
        <right_flank>CTATTGTGTGTTGAAGAGTTGGGGATGGATATCATGGAATTTGAGCTAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAGCTTGAGTTTGAGCTTTCTTTTCTTGGAAGTCTTTCAGGGTGGCCGATTGAGTTTCATACAGTTGCCGTTTTGTATTGTAATCCTCCAACATGAATGAATTTTTTGCGGCGAGAATTTCGGCCTCGAATGGTTCCAAACGACCGCACAATTTAGATTTATTTCCTAGAGCTTGAAGTTAGTGAAATTTAAAATGAAGATGATATACCTGTAGAGGAGATTGCTCTCAATTTGCTTTCAGCTCTGAGCTCGTTGGTCGACATGTCATTCAGAGATCCGTACTGCTTTAGGCGAGGCTCTTGCATGATTAATATCTGATGAACAGAAAATCTTCGGCGTGCGGATGGGATATTTGGTATCCTTACCTCGTTGGCCTTAGGAGGAGTTACTGTAGTGACATTAACCTCTTGGATGTTATTAGAAGGGTTACTGTTAGGCAAAGAATTGTTCAAATATATAGGGGCATTAGGTGCACTCAGCATTGATGTGGATTGGGAACTATTGTGTGTTGAAGAGTTGGGGATGGATATCATGGAATTTGAGCTAATGTTTGGAGATTGGCCAGATACCCCCATCTGACTAGAATTGCAGCTCATTTGACCGAGCTGGTGTTGTTGAGATTGGGGAATCTGCAATTCCCGAAAATAAGTTGTGAAATGATGACCTCAACCGACAGAAAAAAAGTAAAAAACAACAAAACGCCTACCGAGTTCATGGAATGCTGAGTGGGTGGTGGCTGCGCCTGGTCCATATGGCTCAGATGAGATACTTGCTCTTGAGGTTGATTGACTTGGAAGGATGAGATCATTTGGCTCCCTGTTGGAAGACCGGGTTGGAATTTCGATTGGTTGATCTGATTGGATGACGATTGTGAGTCACTCATCATTCCAGACTGATGCATGGTGTAGTGGCTCTGACCACCCTGTCCATAGTTGGAAGACATTTGAACATCCATGGGTCGTGGAACAAAATTCATTGATGCATCATTCTGATTCAGT</canonical>
            <polymorphic>TTGAGCTTGAGTTTGAGCTTTCTTTTCTTGGAAGTCTTTCAGGGTGGCCGATTGAGTTTCATACAGTTGCCGTTTTGTATTGTAATCCTCCAACATGAATGAATTTTTTGCGGCGAGAATTTCGGCCTCGAATGGTTCCAAACGACCGCACAATTTAGATTTATTTCCTAGAGCTTGAAGTTAGTGAAATTTAAAATGAAGATGATATACCTGTAGAGGAGATTGCTCTCAATTTGCTTTCAGCTCTGAGCTCGTTGGTCGACATGTCATTCAGAGATCCGTACTGCTTTAGGCGAGGCTCTTGCATGATTAATATCTGATGAACAGAAAATCTTCGGCGTGCGGATGGGATATTTGGTATCCTTACCTCGTTGGCCTTAGGAGGAGTTACTGTAGTGACATTAACCTCTTGGATGTTATTAGAAGGGTTACTGTTAGGCAAAGAATTGTTCAAATATATAGGGGCATTAGGTGCACTCAGCATTGATGTGGATTGGGAWCTATTGTGTGTTGAAGAGTTGGGGATGGATATCATGGAATTTGAGCTAATGTTTGGAGATTGGCCAGATACCCCCATCTGACTAGAATTGCAGCTCATTTGACCGAGCTGGTGTTGTTGAGATTGGGGAATCTGCAATTCCCGAAAATAAGTTGTGAAATGATGACCTCAACCGACAGAAAAAAAGTAAAAAACAACAAAACGCCTACCGAGTTCATGGAATGCTGAGTGGGTGGTGGCTGCGCCTGGTCCATATGGCTCAGATGAGATACTTGCTCTTGAGGTTGATTGACTTGGAAGGATGAGATCATTTGGCTCCCTGTTGGAAGACCGGGTTGGAATTTCGATTGGTTGATCTGATTGGATGACGATTGTGAGTCACTCATCATTCCAGACTGATGCATGGTGTAGTGGCTCTGACCACCCTGTCCATAGTTGGAAGACATTTGAACATCCATGGGTCGTGGAACAAAATTCATTGATGCATCATTCTGATTCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGGGATATTTGGTATCCTTAC</pcr_primer_p1>
		<pcr_primer_p2>AATTCTAGTCAGATGGGGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GATGGGATATTTGGTATCCTTACCTCGTTGGCCTTAGGAGGAGTTACTGTAGTGACATTAACCTCTTGGATGTTATTAGAAGGGTTACTGTTAGGCAAAGAATTGTTCAAATATATAGGGGCATTAGGTGCACTCAGCATTGATGTGGATTGGGAACTATTGTGTGTTGAAGAGTTGGGGATGGATATCATGGAATTTGAGCTAATGTTTGGAGATTGGCCAGATACCCCCATCTGACTAGAATT</canonical_amplicon>
		<polymorphic_amplicon>GATGGGATATTTGGTATCCTTACCTCGTTGGCCTTAGGAGGAGTTACTGTAGTGACATTAACCTCTTGGATGTTATTAGAAGGGTTACTGTTAGGCAAAGAATTGTTCAAATATATAGGGGCATTAGGTGCACTCAGCATTGATGTGGATTGGGAWCTATTGTGTGTTGAAGAGTTGGGGATGGATATCATGGAATTTGAGCTAATGTTTGGAGATTGGCCAGATACCCCCATCTGACTAGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24382</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>116285</contig_pos>
        <strand>+</strand>
        <context>TAAAATTTAG[G/T]AAAAAAGATA</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGCAGAAGATGAAGTATGTTAGAGATTCTCTTTTAAATTTAAAATTTAG</left_flank>
        <right_flank>AAAAAAGATAGATCTCGAATCTCTCCATTCGTTCAATTTTTCTCATCTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAATGATTTCCGATTTTTTTGAAAACCAAAGGTAGAAGTTGGAAATCAACTAAATTATTCGAATAGTTACTTTGCTGAAAATAAACAAGTACAAATGCAAATATTACTATTTTCTAGCACGCAACTTTACAGTTTTCTCTCAAGTGTTAGAAAGTTGCGAGGTATAGTTTGCACAGAGGTTTTCTTAGAGAACAAACAGCATAAAAGAAGTCAGAAGGAAAAAAGAAAAAAAAATGGAATTTGAAAGAGATCGAAAGGAATATATTGAGTCAAGGAGAAACATTTTTTTTGAAACTGTTTTTTTCTCTTTTTCAGTCGTATGAGTCATCATTTGTTGTTCTTTTGACCTACCAGTGATGCAATTCTTCAGGATTTTTAACTATGACTAACATAAATAAAGTGAACGTTTGTTTAAAATTCAAACAATCGAAAATTGAAACTCGTAACTTGCAGAAGATGAAGTATGTTAGAGATTCTCTTTTAAATTTAAAATTTAGAAAAAAAGATAGATCTCGAATCTCTCCATTCGTTCAATTTTTCTCATCTCTTGACGTCAGTTGAAGATAGTTTCAAAAATAACTTTGGAATTCTAAAAACATTTTTAGCTTTCATAAAACACTGAACTTTTGATTTTTTTTTAACTTGCTTTGGTTCTTTGAACTCTCCTTTCTTTTTAATCCATCACCAAAGTTCTCCATATATTTTTATCAATTGATATGCAAATTTTTTGTTGGTATCACGAGACAACGAGCTACATTGACTGTCAATCAAAAAACCAAAACTCAAACCAATGATGATGGAATTGATACTTGGCTTCCTGATCTAACGTCGAGGAATCATTGAAAAACGAAAATTAGTGCTAAAACTGATCCGACCTGTCTGTGTAGCGTTGTATCGAATTAATAGACTAGCCATGTGGAAACGTATAATTGACGGATCGTCACATTCGATGTTTTTATTGTTGGAATTTTAGTTCTAGTTCCTGGTGGCATTGACGT</canonical>
            <polymorphic>TCAAATGATTTCCGATTTTTTTGAAAACCAAAGGTAGAAGTTGGAAATCAACTAAATTATTCGAATAGTTACTTTGCTGAAAATAAACAAGTACAAATGCAAATATTACTATTTTCTAGCACGCAACTTTACAGTTTTCTCTCAAGTGTTAGAAAGTTGCGAGGTATAGTTTGCACAGAGGTTTTCTTAGAGAACAAACAGCATAAAAGAAGTCAGAAGGAAAAAAGAAAAAAAAATGGAATTTGAAAGAGATCGAAAGGAATATATTGAGTCAAGGAGAAACATTTTTTTTGAAACTGTTTTTTTCTCTTTTTCAGTCGTATGAGTCATCATTTGTTGTTCTTTTGACCTACCAGTGATGCAATTCTTCAGGATTTTTAACTATGACTAACATAAATAAAGTGAACGTTTGTTTAAAATTCAAACAATCGAAAATTGAAACTCGTAACTTGCAGAAGATGAAGTATGTTAGAGATTCTCTTTTAAATTTAAAATTTAGKAAAAAAGATAGATCTCGAATCTCTCCATTCGTTCAATTTTTCTCATCTCTTGACGTCAGTTGAAGATAGTTTCAAAAATAACTTTGGAATTCTAAAAACATTTTTAGCTTTCATAAAACACTGAACTTTTGATTTTTTTTTAACTTGCTTTGGTTCTTTGAACTCTCCTTTCTTTTTAATCCATCACCAAAGTTCTCCATATATTTTTATCAATTGATATGCAAATTTTTTGTTGGTATCACGAGACAACGAGCTACATTGACTGTCAATCAAAAAACCAAAACTCAAACCAATGATGATGGAATTGATACTTGGCTTCCTGATCTAACGTCGAGGAATCATTGAAAAACGAAAATTAGTGCTAAAACTGATCCGACCTGTCTGTGTAGCGTTGTATCGAATTAATAGACTAGCCATGTGGAAACGTATAATTGACGGATCGTCACATTCGATGTTTTTATTGTTGGAATTTTAGTTCTAGTTCCTGGTGGCATTGACGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGAAAATTGAAACTCGTAACT</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGAAAGGAGAGTTCAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCGAAAATTGAAACTCGTAACTTGCAGAAGATGAAGTATGTTAGAGATTCTCTTTTAAATTTAAAATTTAGAAAAAAAGATAGATCTCGAATCTCTCCATTCGTTCAATTTTTCTCATCTCTTGACGTCAGTTGAAGATAGTTTCAAAAATAACTTTGGAATTCTAAAAACATTTTTAGCTTTCATAAAACACTGAACTTTTGATTTTTTTTTAACTTGCTTTGGTTCTTTGAACTCTCCTTTCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATCGAAAATTGAAACTCGTAACTTGCAGAAGATGAAGTATGTTAGAGATTCTCTTTTAAATTTAAAATTTAGKAAAAAAGATAGATCTCGAATCTCTCCATTCGTTCAATTTTTCTCATCTCTTGACGTCAGTTGAAGATAGTTTCAAAAATAACTTTGGAATTCTAAAAACATTTTTAGCTTTCATAAAACACTGAACTTTTGATTTTTTTTTAACTTGCTTTGGTTCTTTGAACTCTCCTTTCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24383</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>116371</contig_pos>
        <strand>+</strand>
        <context>AAATAACTTT[A/G]GAATTCTAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTTCTCATCTCTTGACGTCAGTTGAAGATAGTTTCAAAAATAACTTT</left_flank>
        <right_flank>GAATTCTAAAAACATTTTTAGCTTTCATAAAACACTGAACTTTTGATTTT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAGTACAAATGCAAATATTACTATTTTCTAGCACGCAACTTTACAGTTTTCTCTCAAGTGTTAGAAAGTTGCGAGGTATAGTTTGCACAGAGGTTTTCTTAGAGAACAAACAGCATAAAAGAAGTCAGAAGGAAAAAAGAAAAAAAAATGGAATTTGAAAGAGATCGAAAGGAATATATTGAGTCAAGGAGAAACATTTTTTTTGAAACTGTTTTTTTCTCTTTTTCAGTCGTATGAGTCATCATTTGTTGTTCTTTTGACCTACCAGTGATGCAATTCTTCAGGATTTTTAACTATGACTAACATAAATAAAGTGAACGTTTGTTTAAAATTCAAACAATCGAAAATTGAAACTCGTAACTTGCAGAAGATGAAGTATGTTAGAGATTCTCTTTTAAATTTAAAATTTAGAAAAAAAGATAGATCTCGAATCTCTCCATTCGTTCAATTTTTCTCATCTCTTGACGTCAGTTGAAGATAGTTTCAAAAATAACTTTGGAATTCTAAAAACATTTTTAGCTTTCATAAAACACTGAACTTTTGATTTTTTTTTAACTTGCTTTGGTTCTTTGAACTCTCCTTTCTTTTTAATCCATCACCAAAGTTCTCCATATATTTTTATCAATTGATATGCAAATTTTTTGTTGGTATCACGAGACAACGAGCTACATTGACTGTCAATCAAAAAACCAAAACTCAAACCAATGATGATGGAATTGATACTTGGCTTCCTGATCTAACGTCGAGGAATCATTGAAAAACGAAAATTAGTGCTAAAACTGATCCGACCTGTCTGTGTAGCGTTGTATCGAATTAATAGACTAGCCATGTGGAAACGTATAATTGACGGATCGTCACATTCGATGTTTTTATTGTTGGAATTTTAGTTCTAGTTCCTGGTGGCATTGACGTCAATGGCTACATTTCATCAGTTGTTTCAATTTTAAAAGTTAGAAACCAGTATTGCATATTGTTTGAGCATATTTCTTCTACACTTT</canonical>
            <polymorphic>ACAAGTACAAATGCAAATATTACTATTTTCTAGCACGCAACTTTACAGTTTTCTCTCAAGTGTTAGAAAGTTGCGAGGTATAGTTTGCACAGAGGTTTTCTTAGAGAACAAACAGCATAAAAGAAGTCAGAAGGAAAAAAGAAAAAAAAATGGAATTTGAAAGAGATCGAAAGGAATATATTGAGTCAAGGAGAAACATTTTTTTTGAAACTGTTTTTTTCTCTTTTTCAGTCGTATGAGTCATCATTTGTTGTTCTTTTGACCTACCAGTGATGCAATTCTTCAGGATTTTTAACTATGACTAACATAAATAAAGTGAACGTTTGTTTAAAATTCAAACAATCGAAAATTGAAACTCGTAACTTGCAGAAGATGAAGTATGTTAGAGATTCTCTTTTAAATTTAAAATTTAGAAAAAAAGATAGATCTCGAATCTCTCCATTCGTTCAATTTTTCTCATCTCTTGACGTCAGTTGAAGATAGTTTCAAAAATAACTTTRGAATTCTAAAAACATTTTTAGCTTTCATAAAACACTGAACTTTTGATTTTTTTTTAACTTGCTTTGGTTCTTTGAACTCTCCTTTCTTTTTAATCCATCACCAAAGTTCTCCATATATTTTTATCAATTGATATGCAAATTTTTTGTTGGTATCACGAGACAACGAGCTACATTGACTGTCAATCAAAAAACCAAAACTCAAACCAATGATGATGGAATTGATACTTGGCTTCCTGATCTAACGTCGAGGAATCATTGAAAAACGAAAATTAGTGCTAAAACTGATCCGACCTGTCTGTGTAGCGTTGTATCGAATTAATAGACTAGCCATGTGGAAACGTATAATTGACGGATCGTCACATTCGATGTTTTTATTGTTGGAATTTTAGTTCTAGTTCCTGGTGGCATTGACGTCAATGGCTACATTTCATCAGTTGTTTCAATTTTAAAAGTTAGAAACCAGTATTGCATATTGTTTGAGCATATTTCTTCTACACTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGAAAATTGAAACTCGTAACT</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGAAAGGAGAGTTCAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCGAAAATTGAAACTCGTAACTTGCAGAAGATGAAGTATGTTAGAGATTCTCTTTTAAATTTAAAATTTAGAAAAAAAGATAGATCTCGAATCTCTCCATTCGTTCAATTTTTCTCATCTCTTGACGTCAGTTGAAGATAGTTTCAAAAATAACTTTGGAATTCTAAAAACATTTTTAGCTTTCATAAAACACTGAACTTTTGATTTTTTTTTAACTTGCTTTGGTTCTTTGAACTCTCCTTTCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATCGAAAATTGAAACTCGTAACTTGCAGAAGATGAAGTATGTTAGAGATTCTCTTTTAAATTTAAAATTTAGAAAAAAAGATAGATCTCGAATCTCTCCATTCGTTCAATTTTTCTCATCTCTTGACGTCAGTTGAAGATAGTTTCAAAAATAACTTTRGAATTCTAAAAACATTTTTAGCTTTCATAAAACACTGAACTTTTGATTTTTTTTTAACTTGCTTTGGTTCTTTGAACTCTCCTTTCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24384</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>117679</contig_pos>
        <strand>+</strand>
        <context>TTCTTTAAAA[A/C]TTTTTTTCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGATAGTGATGTCTGTAATACGAGATATCTAAAAGGAACTTTCTTTAAAA</left_flank>
        <right_flank>TTTTTTTCGAAATTTGAAGAAAATTTTAGAACAGTTTCAGATTCAAGGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACGGTAATAGAGAACATATGACATGTATCCCTTTTTTTCTTATCTATTTCTTTACTTTTACGTGGGCGCTGTTCGATTCACCAAAATTTTCCTAGAAGAAGAATGAAAGTGATTTCATGCATCTATGTGCTGGGTGCTGCTATCATCGACGACAACGTTGTCCGGCAGCCGCCTTTTTTTATTATCACAACCTCTTGTCTCTTTATCTCTCTAAGACCTATTTTTCCGTCGTGAGAAACAAAACAGGGACTCCCCTCCAAACTGAAGATCAGTAGGTGGACTTTCTTCCTCTTCAGAAAGTCTAAAACGAAGAAAAAATGAAAAGAACAGGAAAAACTGATAAGAGCATGGAAAGATGAGAGAACTGTTTTCAAGCATGGCGACATACAAAAAAACAAGAGAGAAACAATATTTTTGATAAGAATTTGAGAAGAAAGGAAGAAAACATGATAGTGATGTCTGTAATACGAGATATCTAAAAGGAACTTTCTTTAAAATTTTTTTTCGAAATTTGAAGAAAATTTTAGAACAGTTTCAGATTCAAGGTTCAAATATTACACTCTGGTTGTTAATTTGATTGTAAGCTAATCAAAAACCTACTTTCTGGGTTTGTAATGATAATCAGGCGTCCTCTTCCTCTGTCGCTTTGATCTTCAATTTTTAAGCGGTTAATTACAAATTAACCAGTCACACAAGAACTCACCATTAAAAGTCATTTCTGGCCGAATAATTTTTGATAATATCATGGTTGCAGTGTTGGTTTTGAGATGGTACCTCCACCTGGAAGTATAAAAAATCGAAAATTAAAATAAAAATTTATTTAAAAAAATGATTAAGTCCAATTTTGGAGGGCGTGGATAGAAACAGAAAGAGGAAAGGATCAGACCTTGATTGTTTTATCTTCGATTGATAGTGAATATACTGTTGAAGTGCAAGTAGTCCCATCACAAAAAATTATCACGTAAACCACAGTGAAAATATATGATAAGAATGGGAAC</canonical>
            <polymorphic>GAACGGTAATAGAGAACATATGACATGTATCCCTTTTTTTCTTATCTATTTCTTTACTTTTACGTGGGCGCTGTTCGATTCACCAAAATTTTCCTAGAAGAAGAATGAAAGTGATTTCATGCATCTATGTGCTGGGTGCTGCTATCATCGACGACAACGTTGTCCGGCAGCCGCCTTTTTTTATTATCACAACCTCTTGTCTCTTTATCTCTCTAAGACCTATTTTTCCGTCGTGAGAAACAAAACAGGGACTCCCCTCCAAACTGAAGATCAGTAGGTGGACTTTCTTCCTCTTCAGAAAGTCTAAAACGAAGAAAAAATGAAAAGAACAGGAAAAACTGATAAGAGCATGGAAAGATGAGAGAACTGTTTTCAAGCATGGCGACATACAAAAAAACAAGAGAGAAACAATATTTTTGATAAGAATTTGAGAAGAAAGGAAGAAAACATGATAGTGATGTCTGTAATACGAGATATCTAAAAGGAACTTTCTTTAAAAMTTTTTTTCGAAATTTGAAGAAAATTTTAGAACAGTTTCAGATTCAAGGTTCAAATATTACACTCTGGTTGTTAATTTGATTGTAAGCTAATCAAAAACCTACTTTCTGGGTTTGTAATGATAATCAGGCGTCCTCTTCCTCTGTCGCTTTGATCTTCAATTTTTAAGCGGTTAATTACAAATTAACCAGTCACACAAGAACTCACCATTAAAAGTCATTTCTGGCCGAATAATTTTTGATAATATCATGGTTGCAGTGTTGGTTTTGAGATGGTACCTCCACCTGGAAGTATAAAAAATCGAAAATTAAAATAAAAATTTATTTAAAAAAATGATTAAGTCCAATTTTGGAGGGCGTGGATAGAAACAGAAAGAGGAAAGGATCAGACCTTGATTGTTTTATCTTCGATTGATAGTGAATATACTGTTGAAGTGCAAGTAGTCCCATCACAAAAAATTATCACGTAAACCACAGTGAAAATATATGATAAGAATGGGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>338 294 185 86 73 13 11</canonical_bands>
                <polymorphic_bands>338 294 185 86 86 11</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>338 112 86 85 73 73 51 51 46 27 15 13 12 11 7</canonical_bands>
                <polymorphic_bands>338 112 86 86 85 73 51 51 46 27 15 12 11 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGAAAAGAACAGGAAAAACT</pcr_primer_p1>
		<pcr_primer_p2>CCAGAGTGTAATATTTGAACCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATGAAAAGAACAGGAAAAACTGATAAGAGCATGGAAAGATGAGAGAACTGTTTTCAAGCATGGCGACATACAAAAAAACAAGAGAGAAACAATATTTTTGATAAGAATTTGAGAAGAAAGGAAGAAAACATGATAGTGATGTCTGTAATACGAGATATCTAAAAGGAACTTTCTTTAAAATTTTTTTTCGAAATTTGAAGAAAATTTTAGAACAGTTTCAGATTCAAGGTTCAAATATTACACTCTGG</canonical_amplicon>
		<polymorphic_amplicon>AAATGAAAAGAACAGGAAAAACTGATAAGAGCATGGAAAGATGAGAGAACTGTTTTCAAGCATGGCGACATACAAAAAAACAAGAGAGAAACAATATTTTTGATAAGAATTTGAGAAGAAAGGAAGAAAACATGATAGTGATGTCTGTAATACGAGATATCTAAAAGGAACTTTCTTTAAAAMTTTTTTTCGAAATTTGAAGAAAATTTTAGAACAGTTTCAGATTCAAGGTTCAAATATTACACTCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24385</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>150317</contig_pos>
        <strand>+</strand>
        <context>GGGGAGCTTA[A/G]ATAGTCTCGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGAATCGGTGCAGGTTTATAGACAGTCTGTTGGTACATGGGGGAGCTTA</left_flank>
        <right_flank>ATAGTCTCGACTCGCACGGAACCTCTGCTCATTTTCAATATAGGCCTTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTTTGGTGTACACTCCACCGGCTCCGTCTCCATCACTTCAGCCTGCAATTATTTAGAACTCTTTTTTCCTAGAACAAAAATCAAATCCGGTCCTTCATCCCTTTACAGTAGCTGGCAATTCTCAACCCTTATAATTTTCTCTCTCAAGATATTATGTTCCCTCCTCTCGACAAAAAAATTATACATGTACGTGTGGGTGTGCTCACGAGGATTTGTTTTCCAGGAATCGAACAAAACGGAGCGGAGCTGCGTGCGCAGGTGAAATTGCCAAAACCTATATGATTATAATCTCCCAATAAAAAACGGGCGCACGGGGTACACGATTTGGGTTGGGTGTGCTGGGTGCCGGGTGAAAAAATGAAAAGAAGTCTTGATTGAATATTTTGAGAACAAATGTGACAGAAAAACACTTACTCCTTGAATTGGAGGTCTCTGGATAGAAGTTGTTAGAATCGGTGCAGGTTTATAGACAGTCTGTTGGTACATGGGGGAGCTTAGATAGTCTCGACTCGCACGGAACCTCTGCTCATTTTCAATATAGGCCTTGTCCTTACCGTACATGGAGGCCATGATTCTAAAAAAAACTAAATGAAAGGGGTAAAAATTAAATTTGACAGAAAGTAAAAAATTTAAAACATATAGTCAGGAGAGTTTCATAATAAGCGACAGATGGCATATTGAAATTGACTTTGAATCAATATGATTGTTGAGAGGGAGGAATTAGAAGTTCTGTTTCTTATCTCTATAATTCCCCTTGTTTATTGCAGCACTATTATCTTTTATTGATTCTTTAATGACCGATAATTTGGTAGCATCTCTTGTTAATAAAAACGGCCATGTTTGTATAATGATTAGCGCACTGTGTTGATGTTTCTGGCTGTAAAACTCCACCATCTGATTTCGAAAAAATACTGTAGTCTCTGACAAAAATTTTTGTTTAACTAGTTTTTCATAATCGAAAGAAGAAACCGTGTTTCCAGCTGTCATGTGAGCCAAGG</canonical>
            <polymorphic>ATGTTTGGTGTACACTCCACCGGCTCCGTCTCCATCACTTCAGCCTGCAATTATTTAGAACTCTTTTTTCCTAGAACAAAAATCAAATCCGGTCCTTCATCCCTTTACAGTAGCTGGCAATTCTCAACCCTTATAATTTTCTCTCTCAAGATATTATGTTCCCTCCTCTCGACAAAAAAATTATACATGTACGTGTGGGTGTGCTCACGAGGATTTGTTTTCCAGGAATCGAACAAAACGGAGCGGAGCTGCGTGCGCAGGTGAAATTGCCAAAACCTATATGATTATAATCTCCCAATAAAAAACGGGCGCACGGGGTACACGATTTGGGTTGGGTGTGCTGGGTGCCGGGTGAAAAAATGAAAAGAAGTCTTGATTGAATATTTTGAGAACAAATGTGACAGAAAAACACTTACTCCTTGAATTGGAGGTCTCTGGATAGAAGTTGTTAGAATCGGTGCAGGTTTATAGACAGTCTGTTGGTACATGGGGGAGCTTARATAGTCTCGACTCGCACGGAACCTCTGCTCATTTTCAATATAGGCCTTGTCCTTACCGTACATGGAGGCCATGATTCTAAAAAAAACTAAATGAAAGGGGTAAAAATTAAATTTGACAGAAAGTAAAAAATTTAAAACATATAGTCAGGAGAGTTTCATAATAAGCGACAGATGGCATATTGAAATTGACTTTGAATCAATATGATTGTTGAGAGGGAGGAATTAGAAGTTCTGTTTCTTATCTCTATAATTCCCCTTGTTTATTGCAGCACTATTATCTTTTATTGATTCTTTAATGACCGATAATTTGGTAGCATCTCTTGTTAATAAAAACGGCCATGTTTGTATAATGATTAGCGCACTGTGTTGATGTTTCTGGCTGTAAAACTCCACCATCTGATTTCGAAAAAATACTGTAGTCTCTGACAAAAATTTTTGTTTAACTAGTTTTTCATAATCGAAAGAAGAAACCGTGTTTCCAGCTGTCATGTGAGCCAAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGAAAAGAAGTCTTGATTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTACCCCTTTCATTTAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATGAAAAGAAGTCTTGATTGAATATTTTGAGAACAAATGTGACAGAAAAACACTTACTCCTTGAATTGGAGGTCTCTGGATAGAAGTTGTTAGAATCGGTGCAGGTTTATAGACAGTCTGTTGGTACATGGGGGAGCTTAGATAGTCTCGACTCGCACGGAACCTCTGCTCATTTTCAATATAGGCCTTGTCCTTACCGTACATGGAGGCCATGATTCTAAAAAAAACTAAATGAAAGGGGTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAATGAAAAGAAGTCTTGATTGAATATTTTGAGAACAAATGTGACAGAAAAACACTTACTCCTTGAATTGGAGGTCTCTGGATAGAAGTTGTTAGAATCGGTGCAGGTTTATAGACAGTCTGTTGGTACATGGGGGAGCTTARATAGTCTCGACTCGCACGGAACCTCTGCTCATTTTCAATATAGGCCTTGTCCTTACCGTACATGGAGGCCATGATTCTAAAAAAAACTAAATGAAAGGGGTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24386</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>165822</contig_pos>
        <strand>+</strand>
        <context>AGACCAGACA[A/C]CCAGGAGATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGACATCAATCTCTCAATTTTTTCAGCGAAGAAATTCCTAAGACCAGACA</left_flank>
        <right_flank>CCAGGAGATGGAGGAAACGGACTTCCAAGTGAAGATAGAGTTGCCTTCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCTCTCCACAACCATACAACACTTCCAACTTGGACGCTCTCATCCACAACTCTGTATCTCAAGTCAATTCCCCAGCTACTCGCTCTCTTATCAGCTATGTTCTCAAGTTCCAAATCTTGAAGGCTTTATGTCCAGAGGGAACTATCTTGGTACGATTTTCAATAGGTTTTTGATGGCTAAAAGATGATTTTCAGAGCGAAGGATGCATCTTGTCTGAGGATACTACCGAGAAACTTCGTGAGACCATGAAGTTGGGATCTTCGATCACTTGGTTGAAGGCTCTTGAAATGATCACTGGAAAGGGAGAACTCGATGCTCAACCACTTCTCGAGTACTACGAGCCACTTATCAACTGGCTTCGTAACACCAATGAGATTGATCAAGTTGTCATTGGATGGGACGGAGAAGGAACTCCATTCACTGTGTAAGTTTCTGTTCTGATAGAGGTTGACATCAATCTCTCAATTTTTTCAGCGAAGAAATTCCTAAGACCAGACAACCAGGAGATGGAGGAAACGGACTTCCAAGTGAAGATAGAGTTGCCTTCCCAGGAGGAGAATGTGTTAACGGACAAGAATGTCTTCTGGATTCTCACTGCAACGGAACCATCTGTGTCTGTAACGAAGGTCTCTTCACTTTGGAAATCGGAAACACCTTCAACTGTGTGCCAGGAAATCCAGCTGATAGTGGATTTGGAGATGGAAAGGTATATTTGTAACAAGCAATTTTACTCTTATCAATTTGGTTTCTTCCAGGGAGGACTTGTCATTGGACTCTTCAACAACGAAGCCACGACACCAGAGCCAGCTGCCGAGCCAGAACCAACTACAGTAACCAGCACAAAGATGCCACCACGAGTGAGATCGTCTGCTGCTCTTCCAACTTTCTTATTGACTGTTCTACCAGTTTTCTATTATCTTTTATAATTTGTTTTCAACAAAACTTTAGAACCTTAGGTTTTGATCTTGAAATCTCTGACTTTCTTCCCTTCTCTCTCTT</canonical>
            <polymorphic>CGCTCTCCACAACCATACAACACTTCCAACTTGGACGCTCTCATCCACAACTCTGTATCTCAAGTCAATTCCCCAGCTACTCGCTCTCTTATCAGCTATGTTCTCAAGTTCCAAATCTTGAAGGCTTTATGTCCAGAGGGAACTATCTTGGTACGATTTTCAATAGGTTTTTGATGGCTAAAAGATGATTTTCAGAGCGAAGGATGCATCTTGTCTGAGGATACTACCGAGAAACTTCGTGAGACCATGAAGTTGGGATCTTCGATCACTTGGTTGAAGGCTCTTGAAATGATCACTGGAAAGGGAGAACTCGATGCTCAACCACTTCTCGAGTACTACGAGCCACTTATCAACTGGCTTCGTAACACCAATGAGATTGATCAAGTTGTCATTGGATGGGACGGAGAAGGAACTCCATTCACTGTGTAAGTTTCTGTTCTGATAGAGGTTGACATCAATCTCTCAATTTTTTCAGCGAAGAAATTCCTAAGACCAGACAMCCAGGAGATGGAGGAAACGGACTTCCAAGTGAAGATAGAGTTGCCTTCCCAGGAGGAGAATGTGTTAACGGACAAGAATGTCTTCTGGATTCTCACTGCAACGGAACCATCTGTGTCTGTAACGAAGGTCTCTTCACTTTGGAAATCGGAAACACCTTCAACTGTGTGCCAGGAAATCCAGCTGATAGTGGATTTGGAGATGGAAAGGTATATTTGTAACAAGCAATTTTACTCTTATCAATTTGGTTTCTTCCAGGGAGGACTTGTCATTGGACTCTTCAACAACGAAGCCACGACACCAGAGCCAGCTGCCGAGCCAGAACCAACTACAGTAACCAGCACAAAGATGCCACCACGAGTGAGATCGTCTGCTGCTCTTCCAACTTTCTTATTGACTGTTCTACCAGTTTTCTATTATCTTTTATAATTTGTTTTCAACAAAACTTTAGAACCTTAGGTTTTGATCTTGAAATCTCTGACTTTCTTCCCTTCTCTCTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTACTACGAGCCACTTATCAA</pcr_primer_p1>
		<pcr_primer_p2>ATTCTTGTCCGTTAACACATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAGTACTACGAGCCACTTATCAACTGGCTTCGTAACACCAATGAGATTGATCAAGTTGTCATTGGATGGGACGGAGAAGGAACTCCATTCACTGTGTAAGTTTCTGTTCTGATAGAGGTTGACATCAATCTCTCAATTTTTTCAGCGAAGAAATTCCTAAGACCAGACAACCAGGAGATGGAGGAAACGGACTTCCAAGTGAAGATAGAGTTGCCTTCCCAGGAGGAGAATGTGTTAACGGACAAGAAT</canonical_amplicon>
		<polymorphic_amplicon>GAGTACTACGAGCCACTTATCAACTGGCTTCGTAACACCAATGAGATTGATCAAGTTGTCATTGGATGGGACGGAGAAGGAACTCCATTCACTGTGTAAGTTTCTGTTCTGATAGAGGTTGACATCAATCTCTCAATTTTTTCAGCGAAGAAATTCCTAAGACCAGACAMCCAGGAGATGGAGGAAACGGACTTCCAAGTGAAGATAGAGTTGCCTTCCCAGGAGGAGAATGTGTTAACGGACAAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24387</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>334824</contig_pos>
        <strand>+</strand>
        <context>GGGTGGAGAA[A/T]ACCATCTTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAACTTGGCCCGATTGTTGATACTGATTTGCACTTTTCCGGGTGGAGAA</left_flank>
        <right_flank>ACCATCTTATTGTTTGAATCTGCCGTTTCCGCTACACGTATGAAATTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTCAAAACATTCGCGTCATGTTGAAAAATAAGTTTGCAGATAAAATTAGGCGGATTTACAAATGACCGACCATCCCATGTCTCCCACAGTGGTGGAAATAGAAAGTGACGAAAAACCGAACTACTCTGACCGAATGAATTGCGAAGGGCAGGACCGAGTGATGGTTTTATGGGCTTGAGAAAATGGTATTGGGTTGTGTCACCAAAAACAGGGTGAAAAAAGGGGTGGGATTTCTTGTAGCCCGTCCGCCTATTTCAGAGGAAAAAAAATAGAATCCAATAAATATCGAATTTTGACTTTAAGCAAAATGAGGAGGGTGGGACTCTTGAAAAGAAATGAAGAGGAAAAAAAAAGAACGATCGAACATAGACGTGTTTCCATCAATCATGGCGAGAGAAAAAAGAGAAGCGGTCAATACTGGGAGGTTAGCAAGAGAATTATATCAGAAGAACTTGGCCCGATTGTTGATACTGATTTGCACTTTTCCGGGTGGAGAATACCATCTTATTGTTTGAATCTGCCGTTTCCGCTACACGTATGAAATTTGAAATTTGGTAAGACCAAAAATGTCAAACAAGAAATGGAAGATAGGGCTGTGTTAGAGGATCATTTTAGATTGAACGAATGAAATGGAGCCGCCAGCTGTTGCTCGTACCGTTTTTGGTGCCGGGTTCGGTCAACCTCGGTCAGCTATAAATTCGTTTGGACCATGAGAATTTTCGAGAAGGAAATGAAAATGAAATGATTCACGTATTCCCATCACGGGAACTCGTTTCATAAACAAAATGAAATCGTAAAAACAATTTCCGGATACTAGGTTATACTCAGCAATGAATCATCTATCAGTCTGAATAACAATTGTATCATTGGTTAAGAACTGATATGAGTATCCACTTCCTTTAGTTGGCCGACATTTTCTTCACTTCCTCAACAATAAGGTCAGAAAAAAAGAAGTGTCGACCGGTATAAAATTGCATGTTTGTGTATGGTTCAGTTTT</canonical>
            <polymorphic>GTTTCAAAACATTCGCGTCATGTTGAAAAATAAGTTTGCAGATAAAATTAGGCGGATTTACAAATGACCGACCATCCCATGTCTCCCACAGTGGTGGAAATAGAAAGTGACGAAAAACCGAACTACTCTGACCGAATGAATTGCGAAGGGCAGGACCGAGTGATGGTTTTATGGGCTTGAGAAAATGGTATTGGGTTGTGTCACCAAAAACAGGGTGAAAAAAGGGGTGGGATTTCTTGTAGCCCGTCCGCCTATTTCAGAGGAAAAAAAATAGAATCCAATAAATATCGAATTTTGACTTTAAGCAAAATGAGGAGGGTGGGACTCTTGAAAAGAAATGAAGAGGAAAAAAAAAGAACGATCGAACATAGACGTGTTTCCATCAATCATGGCGAGAGAAAAAAGAGAAGCGGTCAATACTGGGAGGTTAGCAAGAGAATTATATCAGAAGAACTTGGCCCGATTGTTGATACTGATTTGCACTTTTCCGGGTGGAGAAWACCATCTTATTGTTTGAATCTGCCGTTTCCGCTACACGTATGAAATTTGAAATTTGGTAAGACCAAAAATGTCAAACAAGAAATGGAAGATAGGGCTGTGTTAGAGGATCATTTTAGATTGAACGAATGAAATGGAGCCGCCAGCTGTTGCTCGTACCGTTTTTGGTGCCGGGTTCGGTCAACCTCGGTCAGCTATAAATTCGTTTGGACCATGAGAATTTTCGAGAAGGAAATGAAAATGAAATGATTCACGTATTCCCATCACGGGAACTCGTTTCATAAACAAAATGAAATCGTAAAAACAATTTCCGGATACTAGGTTATACTCAGCAATGAATCATCTATCAGTCTGAATAACAATTGTATCATTGGTTAAGAACTGATATGAGTATCCACTTCCTTTAGTTGGCCGACATTTTCTTCACTTCCTCAACAATAAGGTCAGAAAAAAAGAAGTGTCGACCGGTATAAAATTGCATGTTTGTGTATGGTTCAGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATAGACGTGTTTCCATCAAT</pcr_primer_p1>
		<pcr_primer_p2>CTAAAATGATCCTCTAACACAGC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACATAGACGTGTTTCCATCAATCATGGCGAGAGAAAAAAGAGAAGCGGTCAATACTGGGAGGTTAGCAAGAGAATTATATCAGAAGAACTTGGCCCGATTGTTGATACTGATTTGCACTTTTCCGGGTGGAGAATACCATCTTATTGTTTGAATCTGCCGTTTCCGCTACACGTATGAAATTTGAAATTTGGTAAGACCAAAAATGTCAAACAAGAAATGGAAGATAGGGCTGTGTTAGAGGATCATTTTAG</canonical_amplicon>
		<polymorphic_amplicon>ACATAGACGTGTTTCCATCAATCATGGCGAGAGAAAAAAGAGAAGCGGTCAATACTGGGAGGTTAGCAAGAGAATTATATCAGAAGAACTTGGCCCGATTGTTGATACTGATTTGCACTTTTCCGGGTGGAGAAWACCATCTTATTGTTTGAATCTGCCGTTTCCGCTACACGTATGAAATTTGAAATTTGGTAAGACCAAAAATGTCAAACAAGAAATGGAAGATAGGGCTGTGTTAGAGGATCATTTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24388</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>427205</contig_pos>
        <strand></strand>
        <context>ACCTGAAAAG[T/C]TGGTATTAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCCGGTTATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAG</left_flank>
        <right_flank>TGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGCAAAAATGTAAAATTTCGTTCATAAAATGTGTGAAATATCGTACTTTGTCCATAGCTCAACTGAGCTGCCACGTAGATATCTTTTGAAGTATCAACAGGTAAGGTTTTGATTCCACCTGTGAAAACTTTGGTCGGTTGATAGCCTTGATCCCAATTTTCCAAAAGAGCATTTACAATCTATTGAAAACAATTATTCCGTATTAACCATTACTTTACTTACTGCATATTGCTCATTGCCATTTTCGATACTTGGCAAGATATATTGACCGAGAGTAGCAGCTGCAATGTTACTCAGAGTTGCCAGACTCGGGTCATCAGCCTGGAATCCGGTGTTGTTGTAGACAAGAACATTGATCTGCAAAAAATAACTTGAACTTCTGAAATATGGGACATTGTACCTGAATTCTGCGGGCAATCGAAGTAGCAATGATATCTTCAACAATATCGCCGGTTATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATAATTAATATATTTCATCAGAAAAACGTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCATTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAGTTCAAATTGTTGATATCCAATGGAATGCAAGCAATTGGTTTCTCATCATCGTCTGTACAACTGTCAGCAGTTAAGTATTGG</canonical>
            <polymorphic>CTGCAAAAATGTAAAATTTCGTTCATAAAATGTGTGAAATATCGTACTTTGTCCATAGCTCAACTGAGCTGCCACGTAGATATCTTTTGAAGTATCAACAGGTAAGGTTTTGATTCCACCTGTGAAAACTTTGGTCGGTTGATAGCCTTGATCCCAATTTTCCAAAAGAGCATTTACAATCTATTGAAAACAATTATTCCGTATTAACCATTACTTTACTTACTGCATATTGCTCATTGCCATTTTCGATACTTGGCAAGATATATTGACCGAGAGTAGCAGCTGCAATGTTACTCAGAGTTGCCAGACTCGGGTCATCAGCCTGGAATCCGGTGTTGTTGTAGACAAGAACATTGATCTGCAAAAAATAACTTGAACTTCTGAAATATGGGACATTGTACCTGAATTCTGCGGGCAATCGAAGTAGCAATGATATCTTCAACAATATCGCCGGTTATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAGYTGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATAATTAATATATTTCATCAGAAAAACGTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCATTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAGTTCAAATTGTTGATATCCAATGGAATGCAAGCAATTGGTTTCTCATCATCGTCTGTACAACTGTCAGCAGTTAAGTATTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAACTTGAACTTCTGAAATATGG</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAACCGTAGGAAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATAACTTGAACTTCTGAAATATGGGACATTGTACCTGAATTCTGCGGGCAATCGAAGTAGCAATGATATCTTCAACAATATCGCCGGTTATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>AATAACTTGAACTTCTGAAATATGGGACATTGTACCTGAATTCTGCGGGCAATCGAAGTAGCAATGATATCTTCAACAATATCGCCGGTTATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAGYTGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24389</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>427230</contig_pos>
        <strand></strand>
        <context>GTTTTGACTA[A/G]TAACAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGGTAACCACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTA</left_flank>
        <right_flank>TAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAATGTGTGAAATATCGTACTTTGTCCATAGCTCAACTGAGCTGCCACGTAGATATCTTTTGAAGTATCAACAGGTAAGGTTTTGATTCCACCTGTGAAAACTTTGGTCGGTTGATAGCCTTGATCCCAATTTTCCAAAAGAGCATTTACAATCTATTGAAAACAATTATTCCGTATTAACCATTACTTTACTTACTGCATATTGCTCATTGCCATTTTCGATACTTGGCAAGATATATTGACCGAGAGTAGCAGCTGCAATGTTACTCAGAGTTGCCAGACTCGGGTCATCAGCCTGGAATCCGGTGTTGTTGTAGACAAGAACATTGATCTGCAAAAAATAACTTGAACTTCTGAAATATGGGACATTGTACCTGAATTCTGCGGGCAATCGAAGTAGCAATGATATCTTCAACAATATCGCCGGTTATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATAATTAATATATTTCATCAGAAAAACGTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCATTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAGTTCAAATTGTTGATATCCAATGGAATGCAAGCAATTGGTTTCTCATCATCGTCTGTACAACTGTCAGCAGTTAAGTATTGGTTGAGCTTGGCGACACAAGATAAAC</canonical>
            <polymorphic>TAAAATGTGTGAAATATCGTACTTTGTCCATAGCTCAACTGAGCTGCCACGTAGATATCTTTTGAAGTATCAACAGGTAAGGTTTTGATTCCACCTGTGAAAACTTTGGTCGGTTGATAGCCTTGATCCCAATTTTCCAAAAGAGCATTTACAATCTATTGAAAACAATTATTCCGTATTAACCATTACTTTACTTACTGCATATTGCTCATTGCCATTTTCGATACTTGGCAAGATATATTGACCGAGAGTAGCAGCTGCAATGTTACTCAGAGTTGCCAGACTCGGGTCATCAGCCTGGAATCCGGTGTTGTTGTAGACAAGAACATTGATCTGCAAAAAATAACTTGAACTTCTGAAATATGGGACATTGTACCTGAATTCTGCGGGCAATCGAAGTAGCAATGATATCTTCAACAATATCGCCGGTTATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTARTAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATAATTAATATATTTCATCAGAAAAACGTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCATTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAGTTCAAATTGTTGATATCCAATGGAATGCAAGCAATTGGTTTCTCATCATCGTCTGTACAACTGTCAGCAGTTAAGTATTGGTTGAGCTTGGCGACACAAGATAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAACTTGAACTTCTGAAATATGG</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAACCGTAGGAAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATAACTTGAACTTCTGAAATATGGGACATTGTACCTGAATTCTGCGGGCAATCGAAGTAGCAATGATATCTTCAACAATATCGCCGGTTATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>AATAACTTGAACTTCTGAAATATGGGACATTGTACCTGAATTCTGCGGGCAATCGAAGTAGCAATGATATCTTCAACAATATCGCCGGTTATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTARTAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24390</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>427329</contig_pos>
        <strand></strand>
        <context>TAATATATTT[C/T]RTCAGAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATAATTAATATATTT</left_flank>
        <right_flank>ATCAGAAAAACGTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACTTTGGTCGGTTGATAGCCTTGATCCCAATTTTCCAAAAGAGCATTTACAATCTATTGAAAACAATTATTCCGTATTAACCATTACTTTACTTACTGCATATTGCTCATTGCCATTTTCGATACTTGGCAAGATATATTGACCGAGAGTAGCAGCTGCAATGTTACTCAGAGTTGCCAGACTCGGGTCATCAGCCTGGAATCCGGTGTTGTTGTAGACAAGAACATTGATCTGCAAAAAATAACTTGAACTTCTGAAATATGGGACATTGTACCTGAATTCTGCGGGCAATCGAAGTAGCAATGATATCTTCAACAATATCGCCGGTTATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATAATTAATATATTTCATCAGAAAAACGTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCATTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAGTTCAAATTGTTGATATCCAATGGAATGCAAGCAATTGGTTTCTCATCATCGTCTGTACAACTGTCAGCAGTTAAGTATTGGTTGAGCTTGGCGACACAAGATAAACTATTTTCGTTTTTCTGAAAAATTCCAAAATCTCAGTATCGCTTCAAACTATGATGCTTCTTACTGTGTAAAGAGTGGCATTCTCATAATTGTAATTGAA</canonical>
            <polymorphic>AAAACTTTGGTCGGTTGATAGCCTTGATCCCAATTTTCCAAAAGAGCATTTACAATCTATTGAAAACAATTATTCCGTATTAACCATTACTTTACTTACTGCATATTGCTCATTGCCATTTTCGATACTTGGCAAGATATATTGACCGAGAGTAGCAGCTGCAATGTTACTCAGAGTTGCCAGACTCGGGTCATCAGCCTGGAATCCGGTGTTGTTGTAGACAAGAACATTGATCTGCAAAAAATAACTTGAACTTCTGAAATATGGGACATTGTACCTGAATTCTGCGGGCAATCGAAGTAGCAATGATATCTTCAACAATATCGCCGGTTATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATAATTAATATATTTYATCAGAAAAACGTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCATTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAGTTCAAATTGTTGATATCCAATGGAATGCAAGCAATTGGTTTCTCATCATCGTCTGTACAACTGTCAGCAGTTAAGTATTGGTTGAGCTTGGCGACACAAGATAAACTATTTTCGTTTTTCTGAAAAATTCCAAAATCTCAGTATCGCTTCAAACTATGATGCTTCTTACTGTGTAAAGAGTGGCATTCTCATAATTGTAATTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTATAGAACTGACAGCCATATT</pcr_primer_p1>
		<pcr_primer_p2>AAAATTGGCAAAATTAGGTAGAG</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GGTTATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATAATTAATATATTTCATCAGAAAAACGTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTACCTAATTTTGCCAATTTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATAATTAATATATTTYATCAGAAAAACGTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTACCTAATTTTGCCAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24391</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>427330</contig_pos>
        <strand></strand>
        <context>AATATATTTY[A/G]TCAGAAAAAY</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATAATTAATATATTTC</left_flank>
        <right_flank>TCAGAAAAACGTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTAC</right_flank>
        <qual_score>47</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTTTGGTCGGTTGATAGCCTTGATCCCAATTTTCCAAAAGAGCATTTACAATCTATTGAAAACAATTATTCCGTATTAACCATTACTTTACTTACTGCATATTGCTCATTGCCATTTTCGATACTTGGCAAGATATATTGACCGAGAGTAGCAGCTGCAATGTTACTCAGAGTTGCCAGACTCGGGTCATCAGCCTGGAATCCGGTGTTGTTGTAGACAAGAACATTGATCTGCAAAAAATAACTTGAACTTCTGAAATATGGGACATTGTACCTGAATTCTGCGGGCAATCGAAGTAGCAATGATATCTTCAACAATATCGCCGGTTATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATAATTAATATATTTCATCAGAAAAACGTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCATTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAGTTCAAATTGTTGATATCCAATGGAATGCAAGCAATTGGTTTCTCATCATCGTCTGTACAACTGTCAGCAGTTAAGTATTGGTTGAGCTTGGCGACACAAGATAAACTATTTTCGTTTTTCTGAAAAATTCCAAAATCTCAGTATCGCTTCAAACTATGATGCTTCTTACTGTGTAAAGAGTGGCATTCTCATAATTGTAATTGAAG</canonical>
            <polymorphic>AAACTTTGGTCGGTTGATAGCCTTGATCCCAATTTTCCAAAAGAGCATTTACAATCTATTGAAAACAATTATTCCGTATTAACCATTACTTTACTTACTGCATATTGCTCATTGCCATTTTCGATACTTGGCAAGATATATTGACCGAGAGTAGCAGCTGCAATGTTACTCAGAGTTGCCAGACTCGGGTCATCAGCCTGGAATCCGGTGTTGTTGTAGACAAGAACATTGATCTGCAAAAAATAACTTGAACTTCTGAAATATGGGACATTGTACCTGAATTCTGCGGGCAATCGAAGTAGCAATGATATCTTCAACAATATCGCCGGTTATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATAATTAATATATTTCRTCAGAAAAACGTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCATTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAGTTCAAATTGTTGATATCCAATGGAATGCAAGCAATTGGTTTCTCATCATCGTCTGTACAACTGTCAGCAGTTAAGTATTGGTTGAGCTTGGCGACACAAGATAAACTATTTTCGTTTTTCTGAAAAATTCCAAAATCTCAGTATCGCTTCAAACTATGATGCTTCTTACTGTGTAAAGAGTGGCATTCTCATAATTGTAATTGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTATAGAACTGACAGCCATATT</pcr_primer_p1>
		<pcr_primer_p2>AAAATTGGCAAAATTAGGTAGAG</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GGTTATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATAATTAATATATTTCATCAGAAAAACGTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTACCTAATTTTGCCAATTTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATAATTAATATATTTCRTCAGAAAAACGTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTACCTAATTTTGCCAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24392</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>427340</contig_pos>
        <strand></strand>
        <context>RTCAGAAAAA[C/T]GTTAACATTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAACATTTTTCCTACGGTTGATTATAATTAATATATTTCATCAGAAAAA</left_flank>
        <right_flank>GTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTACCTAATTTTGC</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGTTGATAGCCTTGATCCCAATTTTCCAAAAGAGCATTTACAATCTATTGAAAACAATTATTCCGTATTAACCATTACTTTACTTACTGCATATTGCTCATTGCCATTTTCGATACTTGGCAAGATATATTGACCGAGAGTAGCAGCTGCAATGTTACTCAGAGTTGCCAGACTCGGGTCATCAGCCTGGAATCCGGTGTTGTTGTAGACAAGAACATTGATCTGCAAAAAATAACTTGAACTTCTGAAATATGGGACATTGTACCTGAATTCTGCGGGCAATCGAAGTAGCAATGATATCTTCAACAATATCGCCGGTTATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATAATTAATATATTTCATCAGAAAAACGTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCATTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAGTTCAAATTGTTGATATCCAATGGAATGCAAGCAATTGGTTTCTCATCATCGTCTGTACAACTGTCAGCAGTTAAGTATTGGTTGAGCTTGGCGACACAAGATAAACTATTTTCGTTTTTCTGAAAAATTCCAAAATCTCAGTATCGCTTCAAACTATGATGCTTCTTACTGTGTAAAGAGTGGCATTCTCATAATTGTAATTGAAGTTTCTTGCGT</canonical>
            <polymorphic>CGGTTGATAGCCTTGATCCCAATTTTCCAAAAGAGCATTTACAATCTATTGAAAACAATTATTCCGTATTAACCATTACTTTACTTACTGCATATTGCTCATTGCCATTTTCGATACTTGGCAAGATATATTGACCGAGAGTAGCAGCTGCAATGTTACTCAGAGTTGCCAGACTCGGGTCATCAGCCTGGAATCCGGTGTTGTTGTAGACAAGAACATTGATCTGCAAAAAATAACTTGAACTTCTGAAATATGGGACATTGTACCTGAATTCTGCGGGCAATCGAAGTAGCAATGATATCTTCAACAATATCGCCGGTTATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATAATTAATATATTTCATCAGAAAAAYGTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCATTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAGTTCAAATTGTTGATATCCAATGGAATGCAAGCAATTGGTTTCTCATCATCGTCTGTACAACTGTCAGCAGTTAAGTATTGGTTGAGCTTGGCGACACAAGATAAACTATTTTCGTTTTTCTGAAAAATTCCAAAATCTCAGTATCGCTTCAAACTATGATGCTTCTTACTGTGTAAAGAGTGGCATTCTCATAATTGTAATTGAAGTTTCTTGCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTATAGAACTGACAGCCATATT</pcr_primer_p1>
		<pcr_primer_p2>AAAATTGGCAAAATTAGGTAGAG</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GGTTATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATAATTAATATATTTCATCAGAAAAACGTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTACCTAATTTTGCCAATTTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATAATTAATATATTTCATCAGAAAAAYGTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTACCTAATTTTGCCAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24393</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>427422</contig_pos>
        <strand></strand>
        <context>GTATTTTGAA[A/C]ATTCAATCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCTCTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAA</left_flank>
        <right_flank>ATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCC</right_flank>
        <qual_score>50</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTACTGCATATTGCTCATTGCCATTTTCGATACTTGGCAAGATATATTGACCGAGAGTAGCAGCTGCAATGTTACTCAGAGTTGCCAGACTCGGGTCATCAGCCTGGAATCCGGTGTTGTTGTAGACAAGAACATTGATCTGCAAAAAATAACTTGAACTTCTGAAATATGGGACATTGTACCTGAATTCTGCGGGCAATCGAAGTAGCAATGATATCTTCAACAATATCGCCGGTTATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATAATTAATATATTTCATCAGAAAAACGTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCATTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAGTTCAAATTGTTGATATCCAATGGAATGCAAGCAATTGGTTTCTCATCATCGTCTGTACAACTGTCAGCAGTTAAGTATTGGTTGAGCTTGGCGACACAAGATAAACTATTTTCGTTTTTCTGAAAAATTCCAAAATCTCAGTATCGCTTCAAACTATGATGCTTCTTACTGTGTAAAGAGTGGCATTCTCATAATTGTAATTGAAGTTTCTTGCGTAGTCAGTTTCGTTGCAAATCAATTGTCCGATATCTCCATTTTCCCAGATTTTTTGCAATTTTACGTTGTATGAAGCAAGTAG</canonical>
            <polymorphic>ACTTACTGCATATTGCTCATTGCCATTTTCGATACTTGGCAAGATATATTGACCGAGAGTAGCAGCTGCAATGTTACTCAGAGTTGCCAGACTCGGGTCATCAGCCTGGAATCCGGTGTTGTTGTAGACAAGAACATTGATCTGCAAAAAATAACTTGAACTTCTGAAATATGGGACATTGTACCTGAATTCTGCGGGCAATCGAAGTAGCAATGATATCTTCAACAATATCGCCGGTTATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATAATTAATATATTTCATCAGAAAAACGTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAMATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCATTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAGTTCAAATTGTTGATATCCAATGGAATGCAAGCAATTGGTTTCTCATCATCGTCTGTACAACTGTCAGCAGTTAAGTATTGGTTGAGCTTGGCGACACAAGATAAACTATTTTCGTTTTTCTGAAAAATTCCAAAATCTCAGTATCGCTTCAAACTATGATGCTTCTTACTGTGTAAAGAGTGGCATTCTCATAATTGTAATTGAAGTTTCTTGCGTAGTCAGTTTCGTTGCAAATCAATTGTCCGATATCTCCATTTTCCCAGATTTTTTGCAATTTTACGTTGTATGAAGCAAGTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>187 173 156 154 104 91 57 52 26</canonical_bands>
                <polymorphic_bands>187 173 156 154 109 104 91 26</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>187 156 93 67 54 54 50 38 36 32 30 30 28 27 26 26 22 13 11 9 6 5</canonical_bands>
                <polymorphic_bands>187 156 93 67 60 54 54 50 38 36 32 28 27 26 26 22 13 11 9 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAAAATTTCTCTACCTAATTT</pcr_primer_p1>
		<pcr_primer_p2>CCTCCAAATTCAATTGTTAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAAAATTTCTCTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCATTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGG</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAAAATTTCTCTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAMATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCATTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24394</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>427435</contig_pos>
        <strand></strand>
        <context>TCAATCAAAA[C/G]AACACCGTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAA</left_flank>
        <right_flank>AACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTC</right_flank>
        <qual_score>46</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTCATTGCCATTTTCGATACTTGGCAAGATATATTGACCGAGAGTAGCAGCTGCAATGTTACTCAGAGTTGCCAGACTCGGGTCATCAGCCTGGAATCCGGTGTTGTTGTAGACAAGAACATTGATCTGCAAAAAATAACTTGAACTTCTGAAATATGGGACATTGTACCTGAATTCTGCGGGCAATCGAAGTAGCAATGATATCTTCAACAATATCGCCGGTTATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATAATTAATATATTTCATCAGAAAAACGTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCATTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAGTTCAAATTGTTGATATCCAATGGAATGCAAGCAATTGGTTTCTCATCATCGTCTGTACAACTGTCAGCAGTTAAGTATTGGTTGAGCTTGGCGACACAAGATAAACTATTTTCGTTTTTCTGAAAAATTCCAAAATCTCAGTATCGCTTCAAACTATGATGCTTCTTACTGTGTAAAGAGTGGCATTCTCATAATTGTAATTGAAGTTTCTTGCGTAGTCAGTTTCGTTGCAAATCAATTGTCCGATATCTCCATTTTCCCAGATTTTTTGCAATTTTACGTTGTATGAAGCAAGTAGAGAAATGGTTTTT</canonical>
            <polymorphic>TGCTCATTGCCATTTTCGATACTTGGCAAGATATATTGACCGAGAGTAGCAGCTGCAATGTTACTCAGAGTTGCCAGACTCGGGTCATCAGCCTGGAATCCGGTGTTGTTGTAGACAAGAACATTGATCTGCAAAAAATAACTTGAACTTCTGAAATATGGGACATTGTACCTGAATTCTGCGGGCAATCGAAGTAGCAATGATATCTTCAACAATATCGCCGGTTATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATAATTAATATATTTCATCAGAAAAACGTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAASAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCATTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAGTTCAAATTGTTGATATCCAATGGAATGCAAGCAATTGGTTTCTCATCATCGTCTGTACAACTGTCAGCAGTTAAGTATTGGTTGAGCTTGGCGACACAAGATAAACTATTTTCGTTTTTCTGAAAAATTCCAAAATCTCAGTATCGCTTCAAACTATGATGCTTCTTACTGTGTAAAGAGTGGCATTCTCATAATTGTAATTGAAGTTTCTTGCGTAGTCAGTTTCGTTGCAAATCAATTGTCCGATATCTCCATTTTCCCAGATTTTTTGCAATTTTACGTTGTATGAAGCAAGTAGAGAAATGGTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTACCTAATTTTGCCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTCAATTGTTCAATATTCACCTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCATTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAG</canonical_amplicon>
		<polymorphic_amplicon>CTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAASAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCATTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24395</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>427473</contig_pos>
        <strand></strand>
        <context>TATCCATTCC[C/T]CAAAGAATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCC</left_flank>
        <right_flank>CAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCATTTT</right_flank>
        <qual_score>49</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCGAGAGTAGCAGCTGCAATGTTACTCAGAGTTGCCAGACTCGGGTCATCAGCCTGGAATCCGGTGTTGTTGTAGACAAGAACATTGATCTGCAAAAAATAACTTGAACTTCTGAAATATGGGACATTGTACCTGAATTCTGCGGGCAATCGAAGTAGCAATGATATCTTCAACAATATCGCCGGTTATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATAATTAATATATTTCATCAGAAAAACGTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCATTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAGTTCAAATTGTTGATATCCAATGGAATGCAAGCAATTGGTTTCTCATCATCGTCTGTACAACTGTCAGCAGTTAAGTATTGGTTGAGCTTGGCGACACAAGATAAACTATTTTCGTTTTTCTGAAAAATTCCAAAATCTCAGTATCGCTTCAAACTATGATGCTTCTTACTGTGTAAAGAGTGGCATTCTCATAATTGTAATTGAAGTTTCTTGCGTAGTCAGTTTCGTTGCAAATCAATTGTCCGATATCTCCATTTTCCCAGATTTTTTGCAATTTTACGTTGTATGAAGCAAGTAGAGAAATGGTTTTTTCAGTTTTCAAACTTGAGTAAACTTGGCTCTTTCCGGA</canonical>
            <polymorphic>ACCGAGAGTAGCAGCTGCAATGTTACTCAGAGTTGCCAGACTCGGGTCATCAGCCTGGAATCCGGTGTTGTTGTAGACAAGAACATTGATCTGCAAAAAATAACTTGAACTTCTGAAATATGGGACATTGTACCTGAATTCTGCGGGCAATCGAAGTAGCAATGATATCTTCAACAATATCGCCGGTTATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATAATTAATATATTTCATCAGAAAAACGTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCYCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCATTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAGTTCAAATTGTTGATATCCAATGGAATGCAAGCAATTGGTTTCTCATCATCGTCTGTACAACTGTCAGCAGTTAAGTATTGGTTGAGCTTGGCGACACAAGATAAACTATTTTCGTTTTTCTGAAAAATTCCAAAATCTCAGTATCGCTTCAAACTATGATGCTTCTTACTGTGTAAAGAGTGGCATTCTCATAATTGTAATTGAAGTTTCTTGCGTAGTCAGTTTCGTTGCAAATCAATTGTCCGATATCTCCATTTTCCCAGATTTTTTGCAATTTTACGTTGTATGAAGCAAGTAGAGAAATGGTTTTTTCAGTTTTCAAACTTGAGTAAACTTGGCTCTTTCCGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTACCTAATTTTGCCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTCAATTGTTCAATATTCACCTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCATTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAG</canonical_amplicon>
		<polymorphic_amplicon>CTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCYCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCATTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24396</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>427519</contig_pos>
        <strand></strand>
        <context>TTGGGAACGC[A/G]WTTTCCCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGC</left_flank>
        <right_flank>TTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTT</right_flank>
        <qual_score>47</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATCAGCCTGGAATCCGGTGTTGTTGTAGACAAGAACATTGATCTGCAAAAAATAACTTGAACTTCTGAAATATGGGACATTGTACCTGAATTCTGCGGGCAATCGAAGTAGCAATGATATCTTCAACAATATCGCCGGTTATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATAATTAATATATTTCATCAGAAAAACGTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCATTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAGTTCAAATTGTTGATATCCAATGGAATGCAAGCAATTGGTTTCTCATCATCGTCTGTACAACTGTCAGCAGTTAAGTATTGGTTGAGCTTGGCGACACAAGATAAACTATTTTCGTTTTTCTGAAAAATTCCAAAATCTCAGTATCGCTTCAAACTATGATGCTTCTTACTGTGTAAAGAGTGGCATTCTCATAATTGTAATTGAAGTTTCTTGCGTAGTCAGTTTCGTTGCAAATCAATTGTCCGATATCTCCATTTTCCCAGATTTTTTGCAATTTTACGTTGTATGAAGCAAGTAGAGAAATGGTTTTTTCAGTTTTCAAACTTGAGTAAACTTGGCTCTTTCCGGACACACAGGACACTAAAACACATTTTTCAAAACAAAGAATCACCAGC</canonical>
            <polymorphic>TCATCAGCCTGGAATCCGGTGTTGTTGTAGACAAGAACATTGATCTGCAAAAAATAACTTGAACTTCTGAAATATGGGACATTGTACCTGAATTCTGCGGGCAATCGAAGTAGCAATGATATCTTCAACAATATCGCCGGTTATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATAATTAATATATTTCATCAGAAAAACGTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCRTTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAGTTCAAATTGTTGATATCCAATGGAATGCAAGCAATTGGTTTCTCATCATCGTCTGTACAACTGTCAGCAGTTAAGTATTGGTTGAGCTTGGCGACACAAGATAAACTATTTTCGTTTTTCTGAAAAATTCCAAAATCTCAGTATCGCTTCAAACTATGATGCTTCTTACTGTGTAAAGAGTGGCATTCTCATAATTGTAATTGAAGTTTCTTGCGTAGTCAGTTTCGTTGCAAATCAATTGTCCGATATCTCCATTTTCCCAGATTTTTTGCAATTTTACGTTGTATGAAGCAAGTAGAGAAATGGTTTTTTCAGTTTTCAAACTTGAGTAAACTTGGCTCTTTCCGGACACACAGGACACTAAAACACATTTTTCAAAACAAAGAATCACCAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTACCTAATTTTGCCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTCAATTGTTCAATATTCACCTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCATTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAG</canonical_amplicon>
		<polymorphic_amplicon>CTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCRTTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24397</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>427520</contig_pos>
        <strand></strand>
        <context>TGGGAACGCR[T/A]TTTCCCAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCA</left_flank>
        <right_flank>TTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTT</right_flank>
        <qual_score>47</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCAGCCTGGAATCCGGTGTTGTTGTAGACAAGAACATTGATCTGCAAAAAATAACTTGAACTTCTGAAATATGGGACATTGTACCTGAATTCTGCGGGCAATCGAAGTAGCAATGATATCTTCAACAATATCGCCGGTTATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATAATTAATATATTTCATCAGAAAAACGTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCATTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAGTTCAAATTGTTGATATCCAATGGAATGCAAGCAATTGGTTTCTCATCATCGTCTGTACAACTGTCAGCAGTTAAGTATTGGTTGAGCTTGGCGACACAAGATAAACTATTTTCGTTTTTCTGAAAAATTCCAAAATCTCAGTATCGCTTCAAACTATGATGCTTCTTACTGTGTAAAGAGTGGCATTCTCATAATTGTAATTGAAGTTTCTTGCGTAGTCAGTTTCGTTGCAAATCAATTGTCCGATATCTCCATTTTCCCAGATTTTTTGCAATTTTACGTTGTATGAAGCAAGTAGAGAAATGGTTTTTTCAGTTTTCAAACTTGAGTAAACTTGGCTCTTTCCGGACACACAGGACACTAAAACACATTTTTCAAAACAAAGAATCACCAGCG</canonical>
            <polymorphic>CATCAGCCTGGAATCCGGTGTTGTTGTAGACAAGAACATTGATCTGCAAAAAATAACTTGAACTTCTGAAATATGGGACATTGTACCTGAATTCTGCGGGCAATCGAAGTAGCAATGATATCTTCAACAATATCGCCGGTTATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATAATTAATATATTTCATCAGAAAAACGTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCAWTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAGTTCAAATTGTTGATATCCAATGGAATGCAAGCAATTGGTTTCTCATCATCGTCTGTACAACTGTCAGCAGTTAAGTATTGGTTGAGCTTGGCGACACAAGATAAACTATTTTCGTTTTTCTGAAAAATTCCAAAATCTCAGTATCGCTTCAAACTATGATGCTTCTTACTGTGTAAAGAGTGGCATTCTCATAATTGTAATTGAAGTTTCTTGCGTAGTCAGTTTCGTTGCAAATCAATTGTCCGATATCTCCATTTTCCCAGATTTTTTGCAATTTTACGTTGTATGAAGCAAGTAGAGAAATGGTTTTTTCAGTTTTCAAACTTGAGTAAACTTGGCTCTTTCCGGACACACAGGACACTAAAACACATTTTTCAAAACAAAGAATCACCAGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTACCTAATTTTGCCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTCAATTGTTCAATATTCACCTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCATTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAG</canonical_amplicon>
		<polymorphic_amplicon>CTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCAWTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24398</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>427661</contig_pos>
        <strand></strand>
        <context>GCAAGCAATT[G/A]GTTTCTCATC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTGAACAATTGAGTTCAAATTGTTGATATCCAATGGAATGCAAGCAATT</left_flank>
        <right_flank>GTTTCTCATCATCGTCTGTACAACTGTCAGCAGTTAAGTATTGGTTGAGC</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATAATTAATATATTTCATCAGAAAAACGTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCATTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAGTTCAAATTGTTGATATCCAATGGAATGCAAGCAATTGGTTTCTCATCATCGTCTGTACAACTGTCAGCAGTTAAGTATTGGTTGAGCTTGGCGACACAAGATAAACTATTTTCGTTTTTCTGAAAAATTCCAAAATCTCAGTATCGCTTCAAACTATGATGCTTCTTACTGTGTAAAGAGTGGCATTCTCATAATTGTAATTGAAGTTTCTTGCGTAGTCAGTTTCGTTGCAAATCAATTGTCCGATATCTCCATTTTCCCAGATTTTTTGCAATTTTACGTTGTATGAAGCAAGTAGAGAAATGGTTTTTTCAGTTTTCAAACTTGAGTAAACTTGGCTCTTTCCGGACACACAGGACACTAAAACACATTTTTCAAAACAAAGAATCACCAGCGTAGACACAAACCTGGTTCACAATTTCTTCCTAGAAATCCTGGTGGGCAAATACAACGATCCACTTTTACCGGATTCTTTGGCAGGTATCCATCGAATCCAAAGCTTCGACATTTTCGATTCAAACAAAAGTTACCCGTGTA</canonical>
            <polymorphic>ATAGAACTGACAGCCATATTGGTAACCACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATAATTAATATATTTCATCAGAAAAACGTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCATTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAGTTCAAATTGTTGATATCCAATGGAATGCAAGCAATTRGTTTCTCATCATCGTCTGTACAACTGTCAGCAGTTAAGTATTGGTTGAGCTTGGCGACACAAGATAAACTATTTTCGTTTTTCTGAAAAATTCCAAAATCTCAGTATCGCTTCAAACTATGATGCTTCTTACTGTGTAAAGAGTGGCATTCTCATAATTGTAATTGAAGTTTCTTGCGTAGTCAGTTTCGTTGCAAATCAATTGTCCGATATCTCCATTTTCCCAGATTTTTTGCAATTTTACGTTGTATGAAGCAAGTAGAGAAATGGTTTTTTCAGTTTTCAAACTTGAGTAAACTTGGCTCTTTCCGGACACACAGGACACTAAAACACATTTTTCAAAACAAAGAATCACCAGCGTAGACACAAACCTGGTTCACAATTTCTTCCTAGAAATCCTGGTGGGCAAATACAACGATCCACTTTTACCGGATTCTTTGGCAGGTATCCATCGAATCCAAAGCTTCGACATTTTCGATTCAAACAAAAGTTACCCGTGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>429 301 204 39 27</canonical_bands>
                <polymorphic_bands>429 301 243 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTTTTTCCAAAACAAGAATA</pcr_primer_p1>
		<pcr_primer_p2>AATGCCACTCTTTACACAGTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAGTTCAAATTGTTGATATCCAATGGAATGCAAGCAATTGGTTTCTCATCATCGTCTGTACAACTGTCAGCAGTTAAGTATTGGTTGAGCTTGGCGACACAAGATAAACTATTTTCGTTTTTCTGAAAAATTCCAAAATCTCAGTATCGCTTCAAACTATGATGCTTCTTACTGTGTAAAGAGTGGCATT</canonical_amplicon>
		<polymorphic_amplicon>AAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAGTTCAAATTGTTGATATCCAATGGAATGCAAGCAATTRGTTTCTCATCATCGTCTGTACAACTGTCAGCAGTTAAGTATTGGTTGAGCTTGGCGACACAAGATAAACTATTTTCGTTTTTCTGAAAAATTCCAAAATCTCAGTATCGCTTCAAACTATGATGCTTCTTACTGTGTAAAGAGTGGCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24399</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>427687</contig_pos>
        <strand></strand>
        <context>CTGTACAACT[G/A]TCAGCAGTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATATCCAATGGAATGCAAGCAATTGGTTTCTCATCATCGTCTGTACAACT</left_flank>
        <right_flank>TCAGCAGTTAAGTATTGGTTGAGCTTGGCGACACAAGATAAACTATTTTC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATAATTAATATATTTCATCAGAAAAACGTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCATTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAGTTCAAATTGTTGATATCCAATGGAATGCAAGCAATTGGTTTCTCATCATCGTCTGTACAACTGTCAGCAGTTAAGTATTGGTTGAGCTTGGCGACACAAGATAAACTATTTTCGTTTTTCTGAAAAATTCCAAAATCTCAGTATCGCTTCAAACTATGATGCTTCTTACTGTGTAAAGAGTGGCATTCTCATAATTGTAATTGAAGTTTCTTGCGTAGTCAGTTTCGTTGCAAATCAATTGTCCGATATCTCCATTTTCCCAGATTTTTTGCAATTTTACGTTGTATGAAGCAAGTAGAGAAATGGTTTTTTCAGTTTTCAAACTTGAGTAAACTTGGCTCTTTCCGGACACACAGGACACTAAAACACATTTTTCAAAACAAAGAATCACCAGCGTAGACACAAACCTGGTTCACAATTTCTTCCTAGAAATCCTGGTGGGCAAATACAACGATCCACTTTTACCGGATTCTTTGGCAGGTATCCATCGAATCCAAAGCTTCGACATTTTCGATTCAAACAAAAGTTACCCGTGTAGTCAACATCACATACACATGAACCGT</canonical>
            <polymorphic>CACGAAAACCTGAAAAGTTGGTATTAGATATTGTTTTGACTAATAACAAAAAATGATTGTTTGAATCAGAAAATGGAGAATTCCGTTTTTTTGCAGTTTCTTGGAACATTTTTCCTACGGTTGATTATAATTAATATATTTCATCAGAAAAACGTTAACATTACCGTATCCTTTTTTTTGAAAATTTCTCTACCTAATTTTGCCAATTTTTTACTGTTTTTTCAGTATTTTGAAAATTCAATCAAAACAACACCGTGAAAAAGCAATTTGAAAGTTATCCATTCCCCAAAGAATTTTCGGAAAAATACTTTGAGAAAAATTTTGGGAACGCATTTTCCCAAAAAAGGAAAATTGTTTAGAGCAAGTTGTCCTAGAAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAGTTCAAATTGTTGATATCCAATGGAATGCAAGCAATTGGTTTCTCATCATCGTCTGTACAACTRTCAGCAGTTAAGTATTGGTTGAGCTTGGCGACACAAGATAAACTATTTTCGTTTTTCTGAAAAATTCCAAAATCTCAGTATCGCTTCAAACTATGATGCTTCTTACTGTGTAAAGAGTGGCATTCTCATAATTGTAATTGAAGTTTCTTGCGTAGTCAGTTTCGTTGCAAATCAATTGTCCGATATCTCCATTTTCCCAGATTTTTTGCAATTTTACGTTGTATGAAGCAAGTAGAGAAATGGTTTTTTCAGTTTTCAAACTTGAGTAAACTTGGCTCTTTCCGGACACACAGGACACTAAAACACATTTTTCAAAACAAAGAATCACCAGCGTAGACACAAACCTGGTTCACAATTTCTTCCTAGAAATCCTGGTGGGCAAATACAACGATCCACTTTTACCGGATTCTTTGGCAGGTATCCATCGAATCCAAAGCTTCGACATTTTCGATTCAAACAAAAGTTACCCGTGTAGTCAACATCACATACACATGAACCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>391 245 119 108 50 46 39 2</canonical_bands>
                <polymorphic_bands>391 353 119 50 46 39 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTTTTTCCAAAACAAGAATA</pcr_primer_p1>
		<pcr_primer_p2>AATGCCACTCTTTACACAGTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAGTTCAAATTGTTGATATCCAATGGAATGCAAGCAATTGGTTTCTCATCATCGTCTGTACAACTGTCAGCAGTTAAGTATTGGTTGAGCTTGGCGACACAAGATAAACTATTTTCGTTTTTCTGAAAAATTCCAAAATCTCAGTATCGCTTCAAACTATGATGCTTCTTACTGTGTAAAGAGTGGCATT</canonical_amplicon>
		<polymorphic_amplicon>AAACTTTTTCCAAAACAAGAATAACTAACAATTGAATTTGGAGGTGAATATTGAACAATTGAGTTCAAATTGTTGATATCCAATGGAATGCAAGCAATTGGTTTCTCATCATCGTCTGTACAACTRTCAGCAGTTAAGTATTGGTTGAGCTTGGCGACACAAGATAAACTATTTTCGTTTTTCTGAAAAATTCCAAAATCTCAGTATCGCTTCAAACTATGATGCTTCTTACTGTGTAAAGAGTGGCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24400</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>461980</contig_pos>
        <strand>+</strand>
        <context>CAAAATGAAC[A/G]AAAAAAAGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCCTGAAAACCCTTGCGGTTTTGAGAATCACATATCCTACAAAATGAAC</left_flank>
        <right_flank>AAAAAAAGAGAAAAGAAGGAAGAAAGGATGCGTCACAAAGCCACCAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATGAGAAGTGTTGATTGTGTTTGCCTACATTTTCCAGCGGAAAAGAATGAGTCAGCAGGCAGCAACAGGTAGAGAGATGCCTATCTGCTTTTGTGTGTTTTCTGCTACCCCACTTACTATCGGTATCCATCTCTCCAAAGATGAAATCCAATTCGACACGGGTGGGCTCAACATTGATGGTTCTCAAAAGTGCAGCGATCTCATTACGTGAAAGACGACCGTCTTTGTCGACGTCAAGAAGGTCGAATGTCTCCGAGAGTTCTGAAAATCGTCTTTTTTTTTGTTTAAAAATTGTACAGCTTCTTTCTCCCGCCAAAACATTTGTTAGTATGTTGTTCTTTTTTCTCCCTCTCTACCCGCTAAAATCTTTGCTCTAGGGGTGCAGTAAAAGCACATCGTTGTACATGAATGAATAAATTCATCTTCTTTTTCCCATTCTTGCTGCTCATCCTGAAAACCCTTGCGGTTTTGAGAATCACATATCCTACAAAATGAACAAAAAAAAGAGAAAAGAAGGAAGAAAGGATGCGTCACAAAGCCACCAAATTCCAATTCGATTAAGAAGGTTGATTCGAGACCTTTCCGGGCGCGAGAGACTCAATTCAATTAAAATAAACGTTTTGTTAGTCGTAGCGAGAGCAAAAGATTTGTCCATTTTTTGTTTGACGGGGACGCGACATCAACGATCGCAAATTGGATACGACGAAGGTTGATGTTCAATTCTACACAACCAGAGGAGATTCTGATTTCAATGATCGCTTCTAGAAATGTCTTCCGACAAATAAAAGAAAAGGCTCTTGTCCTTTTGCTCTTTTGGAACCTCTTCTCTGTTTCACCTATCTCTTTGCGATAGGAGAGGCGCACTGAAGAATGTGTCCCCTGTGGAATAGCTAGCCAACAAAACACTACGCCTACATTTTTGTGTGGATGTATGCTTTCAAAAAGAGCTAAAGTATGGGAAACAAGTATACGGTTGACGGGTTAATTAAAACAAGCGA</canonical>
            <polymorphic>CCATGAGAAGTGTTGATTGTGTTTGCCTACATTTTCCAGCGGAAAAGAATGAGTCAGCAGGCAGCAACAGGTAGAGAGATGCCTATCTGCTTTTGTGTGTTTTCTGCTACCCCACTTACTATCGGTATCCATCTCTCCAAAGATGAAATCCAATTCGACACGGGTGGGCTCAACATTGATGGTTCTCAAAAGTGCAGCGATCTCATTACGTGAAAGACGACCGTCTTTGTCGACGTCAAGAAGGTCGAATGTCTCCGAGAGTTCTGAAAATCGTCTTTTTTTTTGTTTAAAAATTGTACAGCTTCTTTCTCCCGCCAAAACATTTGTTAGTATGTTGTTCTTTTTTCTCCCTCTCTACCCGCTAAAATCTTTGCTCTAGGGGTGCAGTAAAAGCACATCGTTGTACATGAATGAATAAATTCATCTTCTTTTTCCCATTCTTGCTGCTCATCCTGAAAACCCTTGCGGTTTTGAGAATCACATATCCTACAAAATGAACRAAAAAAAGAGAAAAGAAGGAAGAAAGGATGCGTCACAAAGCCACCAAATTCCAATTCGATTAAGAAGGTTGATTCGAGACCTTTCCGGGCGCGAGAGACTCAATTCAATTAAAATAAACGTTTTGTTAGTCGTAGCGAGAGCAAAAGATTTGTCCATTTTTTGTTTGACGGGGACGCGACATCAACGATCGCAAATTGGATACGACGAAGGTTGATGTTCAATTCTACACAACCAGAGGAGATTCTGATTTCAATGATCGCTTCTAGAAATGTCTTCCGACAAATAAAAGAAAAGGCTCTTGTCCTTTTGCTCTTTTGGAACCTCTTCTCTGTTTCACCTATCTCTTTGCGATAGGAGAGGCGCACTGAAGAATGTGTCCCCTGTGGAATAGCTAGCCAACAAAACACTACGCCTACATTTTTGTGTGGATGTATGCTTTCAAAAAGAGCTAAAGTATGGGAAACAAGTATACGGTTGACGGGTTAATTAAAACAAGCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATCGTTGTACATGAATGAAT</pcr_primer_p1>
		<pcr_primer_p2>CTCTCGCTACGACTAACAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACATCGTTGTACATGAATGAATAAATTCATCTTCTTTTTCCCATTCTTGCTGCTCATCCTGAAAACCCTTGCGGTTTTGAGAATCACATATCCTACAAAATGAACAAAAAAAAGAGAAAAGAAGGAAGAAAGGATGCGTCACAAAGCCACCAAATTCCAATTCGATTAAGAAGGTTGATTCGAGACCTTTCCGGGCGCGAGAGACTCAATTCAATTAAAATAAACGTTTTGTTAGTCGTAGCGAGAG</canonical_amplicon>
		<polymorphic_amplicon>ACATCGTTGTACATGAATGAATAAATTCATCTTCTTTTTCCCATTCTTGCTGCTCATCCTGAAAACCCTTGCGGTTTTGAGAATCACATATCCTACAAAATGAACRAAAAAAAGAGAAAAGAAGGAAGAAAGGATGCGTCACAAAGCCACCAAATTCCAATTCGATTAAGAAGGTTGATTCGAGACCTTTCCGGGCGCGAGAGACTCAATTCAATTAAAATAAACGTTTTGTTAGTCGTAGCGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24401</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>462563</contig_pos>
        <strand>+</strand>
        <context>CAAACAAAAT[A/G]TTTTTGTTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTCCTTGTTGAGAATTTTAATTAAAGAGTGAAAGTGCCAAACAAAAT</left_flank>
        <right_flank>TTTTTGTTAAGCAGTTCTTCTGAAATTCATGTAGTTTGCACTGGAAATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCGGGCGCGAGAGACTCAATTCAATTAAAATAAACGTTTTGTTAGTCGTAGCGAGAGCAAAAGATTTGTCCATTTTTTGTTTGACGGGGACGCGACATCAACGATCGCAAATTGGATACGACGAAGGTTGATGTTCAATTCTACACAACCAGAGGAGATTCTGATTTCAATGATCGCTTCTAGAAATGTCTTCCGACAAATAAAAGAAAAGGCTCTTGTCCTTTTGCTCTTTTGGAACCTCTTCTCTGTTTCACCTATCTCTTTGCGATAGGAGAGGCGCACTGAAGAATGTGTCCCCTGTGGAATAGCTAGCCAACAAAACACTACGCCTACATTTTTGTGTGGATGTATGCTTTCAAAAAGAGCTAAAGTATGGGAAACAAGTATACGGTTGACGGGTTAATTAAAACAAGCGACCAAAGTACGGAAGCACTTGTTTTAAATGAGCTTTTTCCTTGTTGAGAATTTTAATTAAAGAGTGAAAGTGCCAAACAAAATATTTTTGTTAAGCAGTTCTTCTGAAATTCATGTAGTTTGCACTGGAAATAATGGTTTCAATTGGCCTGCTATAATACTTCCTTGTTGAGGCACAAATACATCTCTAGGAAACAGCTTGTCAAGTTTCTTCCGATTGTTCCACTTCCTTTGGCGTCGTGAGCAAGTTCAATGAGATTTCAGGTTGAACCAAATCCGACCCTACATGAATTGTGGAATTACGACTTTCGAAAATTGATCTCTCCTCCGCGGTTATTTGAGAGTTATTTGCGGTCCAAATTACAGCAATTTTGTGTGTTGCACAGCCCGAAAAAAGTTTCCCAATTTGGATGGAAAAAAAAGCTCAGTGCAAAAAATTCCATCCCTTGCGATGATTGGGGTAACACACCCTGCCCTTCGTTGAGAGAAGAGATGCATGAAGATAAAAGTTTGGGATGACGACACTAACTTTTTTCAGAAGTAACTTGACACTATAACTGATTTATGACTTCCACATGTTCTGAA</canonical>
            <polymorphic>TCCGGGCGCGAGAGACTCAATTCAATTAAAATAAACGTTTTGTTAGTCGTAGCGAGAGCAAAAGATTTGTCCATTTTTTGTTTGACGGGGACGCGACATCAACGATCGCAAATTGGATACGACGAAGGTTGATGTTCAATTCTACACAACCAGAGGAGATTCTGATTTCAATGATCGCTTCTAGAAATGTCTTCCGACAAATAAAAGAAAAGGCTCTTGTCCTTTTGCTCTTTTGGAACCTCTTCTCTGTTTCACCTATCTCTTTGCGATAGGAGAGGCGCACTGAAGAATGTGTCCCCTGTGGAATAGCTAGCCAACAAAACACTACGCCTACATTTTTGTGTGGATGTATGCTTTCAAAAAGAGCTAAAGTATGGGAAACAAGTATACGGTTGACGGGTTAATTAAAACAAGCGACCAAAGTACGGAAGCACTTGTTTTAAATGAGCTTTTTCCTTGTTGAGAATTTTAATTAAAGAGTGAAAGTGCCAAACAAAATRTTTTTGTTAAGCAGTTCTTCTGAAATTCATGTAGTTTGCACTGGAAATAATGGTTTCAATTGGCCTGCTATAATACTTCCTTGTTGAGGCACAAATACATCTCTAGGAAACAGCTTGTCAAGTTTCTTCCGATTGTTCCACTTCCTTTGGCGTCGTGAGCAAGTTCAATGAGATTTCAGGTTGAACCAAATCCGACCCTACATGAATTGTGGAATTACGACTTTCGAAAATTGATCTCTCCTCCGCGGTTATTTGAGAGTTATTTGCGGTCCAAATTACAGCAATTTTGTGTGTTGCACAGCCCGAAAAAAGTTTCCCAATTTGGATGGAAAAAAAAGCTCAGTGCAAAAAATTCCATCCCTTGCGATGATTGGGGTAACACACCCTGCCCTTCGTTGAGAGAAGAGATGCATGAAGATAAAAGTTTGGGATGACGACACTAACTTTTTTCAGAAGTAACTTGACACTATAACTGATTTATGACTTCCACATGTTCTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGCTAAAGTATGGGAAACAAGT</pcr_primer_p1>
		<pcr_primer_p2>GCTGTTTCCTAGAGATGTATTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAGCTAAAGTATGGGAAACAAGTATACGGTTGACGGGTTAATTAAAACAAGCGACCAAAGTACGGAAGCACTTGTTTTAAATGAGCTTTTTCCTTGTTGAGAATTTTAATTAAAGAGTGAAAGTGCCAAACAAAATATTTTTGTTAAGCAGTTCTTCTGAAATTCATGTAGTTTGCACTGGAAATAATGGTTTCAATTGGCCTGCTATAATACTTCCTTGTTGAGGCACAAATACATCTCTAGGAAACAGC</canonical_amplicon>
		<polymorphic_amplicon>GAGCTAAAGTATGGGAAACAAGTATACGGTTGACGGGTTAATTAAAACAAGCGACCAAAGTACGGAAGCACTTGTTTTAAATGAGCTTTTTCCTTGTTGAGAATTTTAATTAAAGAGTGAAAGTGCCAAACAAAATRTTTTTGTTAAGCAGTTCTTCTGAAATTCATGTAGTTTGCACTGGAAATAATGGTTTCAATTGGCCTGCTATAATACTTCCTTGTTGAGGCACAAATACATCTCTAGGAAACAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24402</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>731530</contig_pos>
        <strand>+</strand>
        <context>GTGAGATATG[A/G]ATGTCTTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAATGTGCGAGTCAGAAACTGTTGGGGATGGTTGATCATGTGAGATATG</left_flank>
        <right_flank>ATGTCTTTCTCATCGATATTCATTTTTAGTGGTGGTTCTCCCTAAAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATGACTACATTGGTATCACTAGACTGAACAGGACTGAAGGGTTTTGGTATCAAGATAACGGATGAGTATGATTTATGGGATCATTGGCGGGCGATTCATATGGACAAGATTGTTCAGCAACATTCTCATCGCAGGATTTTGGAGGAAACTGTTGGCTCCAGGAGGCGGGATAGGCATCATTGGGGAGGGAAGCATAACCGGAGGCATCGGACCTGCTTGGAATTTGCGGAAAATGTCGATTTGGATTTGCAAATCTCTGATGGTTTTTTCGTAAGCACGACATTTATCCTCGACGGCTACAAGCTTTCCCCGGGCGACCTGAAACATTGAAATTTGTTATTTTTTGCAGATGCTCTATTAGCGGATCAAATCAGAAACATTGATGTTACAAACCTGACAATCGAAGCACTTTGAGCTCTCTCCGGAATGACTCGAAGACCCTCCGGAAATGTGCGAGTCAGAAACTGTTGGGGATGGTTGATCATGTGAGATATGAATGTCTTTCTCATCGATATTCATTTTTAGTGGTGGTTCTCCCTAAAAAATAACATTTAATAGGCGTCTTATTGAGTTTTAGTTTCTTACGTCGTCACCCTCCACATCAATATCAGCCTCGTGTTCCAGTTTTCTTTTACAGGTCGGTTCTGTTTTTACAATGACCGATCGAGGACTGACGTCGGTGCTCTCCACTTCAAACTTGAGATCTTCCTCAGTGGTTTGCACTTCCAACTCGTCATAATCGCTCATGTTGGGAGACTCGAGAGAATCCTTAAATTTGAAACACTTTAGAAATCAGAAAACGTGTGTTTGATACTATTTTGCTCACCTTGGAAGGAGTTTGTTGGGCTGCCAGATTAAGTGTCGAATTGTTCACAGGGTGATTGTTTGCAAGCCATGCTGATAAGAATTGAGAGGGACCCATATTCGATAGATCCAGTGGGAAAACTGATTTTGAAGATTCGGGACTTTTCAACAGATTCGGGAAAATGGATCCAA</canonical>
            <polymorphic>AAAAATGACTACATTGGTATCACTAGACTGAACAGGACTGAAGGGTTTTGGTATCAAGATAACGGATGAGTATGATTTATGGGATCATTGGCGGGCGATTCATATGGACAAGATTGTTCAGCAACATTCTCATCGCAGGATTTTGGAGGAAACTGTTGGCTCCAGGAGGCGGGATAGGCATCATTGGGGAGGGAAGCATAACCGGAGGCATCGGACCTGCTTGGAATTTGCGGAAAATGTCGATTTGGATTTGCAAATCTCTGATGGTTTTTTCGTAAGCACGACATTTATCCTCGACGGCTACAAGCTTTCCCCGGGCGACCTGAAACATTGAAATTTGTTATTTTTTGCAGATGCTCTATTAGCGGATCAAATCAGAAACATTGATGTTACAAACCTGACAATCGAAGCACTTTGAGCTCTCTCCGGAATGACTCGAAGACCCTCCGGAAATGTGCGAGTCAGAAACTGTTGGGGATGGTTGATCATGTGAGATATGRATGTCTTTCTCATCGATATTCATTTTTAGTGGTGGTTCTCCCTAAAAAATAACATTTAATAGGCGTCTTATTGAGTTTTAGTTTCTTACGTCGTCACCCTCCACATCAATATCAGCCTCGTGTTCCAGTTTTCTTTTACAGGTCGGTTCTGTTTTTACAATGACCGATCGAGGACTGACGTCGGTGCTCTCCACTTCAAACTTGAGATCTTCCTCAGTGGTTTGCACTTCCAACTCGTCATAATCGCTCATGTTGGGAGACTCGAGAGAATCCTTAAATTTGAAACACTTTAGAAATCAGAAAACGTGTGTTTGATACTATTTTGCTCACCTTGGAAGGAGTTTGTTGGGCTGCCAGATTAAGTGTCGAATTGTTCACAGGGTGATTGTTTGCAAGCCATGCTGATAAGAATTGAGAGGGACCCATATTCGATAGATCCAGTGGGAAAACTGATTTTGAAGATTCGGGACTTTTCAACAGATTCGGGAAAATGGATCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTGAAACATTGAAATTTGTTAT</pcr_primer_p1>
		<pcr_primer_p2>AAGACGCCTATTAAATGTTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCTGAAACATTGAAATTTGTTATTTTTTGCAGATGCTCTATTAGCGGATCAAATCAGAAACATTGATGTTACAAACCTGACAATCGAAGCACTTTGAGCTCTCTCCGGAATGACTCGAAGACCCTCCGGAAATGTGCGAGTCAGAAACTGTTGGGGATGGTTGATCATGTGAGATATGAATGTCTTTCTCATCGATATTCATTTTTAGTGGTGGTTCTCCCTAAAAAATAACATTTAATAGGCGTCTT</canonical_amplicon>
		<polymorphic_amplicon>CCTGAAACATTGAAATTTGTTATTTTTTGCAGATGCTCTATTAGCGGATCAAATCAGAAACATTGATGTTACAAACCTGACAATCGAAGCACTTTGAGCTCTCTCCGGAATGACTCGAAGACCCTCCGGAAATGTGCGAGTCAGAAACTGTTGGGGATGGTTGATCATGTGAGATATGRATGTCTTTCTCATCGATATTCATTTTTAGTGGTGGTTCTCCCTAAAAAATAACATTTAATAGGCGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24403</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>758149</contig_pos>
        <strand>+</strand>
        <context>ACAAAACGTC[G/T]GAAATTGTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGAAAATGCAGTTGTGACTTCATTTACTCTGCCAAGAAACACAAAACGTC</left_flank>
        <right_flank>GAAATTGTTGAAATGAAAAAAAAATTTGTAGTATTCATAGAAATAAACTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACTTCAAGCTCAATTATCTCGGTTCCATGGAAAGATATGAAAAAGGTGTCAATGGTTGGGATGTTTGTCATAACTTAGCCAACGTCTTTTTAGTTTACCATTTTTTTCAAACGTTTACTGAAATTGAGATAATTAAATCACAAGGTGGGGTCTTGTCTGATGCATTCAAGTTTCCGTGAACATTTTATCAGAATGGCACCCAAATTGTAGTTTTTATGGCCTAGATGTCTCGGTTTGTGTGGAGGATAGTGAAAAGTGTGCAACTGACAAAATGCTTATTATAATAATAATAAAAACTTTTTGTCTGTTTACTATTTTTCGATGCGTTTCACAACAACCGAGATAACCGAGATACATCGGCTCAAAGAAGATAGTTAAAAGGGTCTCTGTATATTTTTACATGTTCTTGATACCTAAAATGATCACAACTTGTAAAAAAAGCTATTCCGGAAAATGCAGTTGTGACTTCATTTACTCTGCCAAGAAACACAAAACGTCGGAAATTGTTGAAATGAAAAAAAAATTTGTAGTATTCATAGAAATAAACTAAACTTGAACTAACTACACTGCTCCATCTCGCCTTTTAAACAATTCCGCTAGACCAATTATATAATAAATGTATAAGGAGAGTTTGCAGAACTCTATACAATTACATCAAACAAGCACAATCTTTCTGACACTTCACCTTTTATTAGTCTGATTTAATATTGAAGCTTTGTAAGAATGATAGTTTGAACTATAACTAGAATAAATCGAGAATGATGTTATGAACTCAAGCCATTCATTTCAAAGGACAACGTTTTTATTAGAGTTCTAATCGAGTTCAGTTATTTAAGAACTTTTCCAGTTTTCTAAATTGCAAACGTCATATCAAAAGCTATCGAAAAAATCGAACACCGAAAAGAATGATGATCGGATTTTTTAAGGTCAGAATATGTAGGTGGATTTATCAACAGTGGAAATCTGGATAGAACATTTTTAGAAACACATCACTTTCTT</canonical>
            <polymorphic>CACTTCAAGCTCAATTATCTCGGTTCCATGGAAAGATATGAAAAAGGTGTCAATGGTTGGGATGTTTGTCATAACTTAGCCAACGTCTTTTTAGTTTACCATTTTTTTCAAACGTTTACTGAAATTGAGATAATTAAATCACAAGGTGGGGTCTTGTCTGATGCATTCAAGTTTCCGTGAACATTTTATCAGAATGGCACCCAAATTGTAGTTTTTATGGCCTAGATGTCTCGGTTTGTGTGGAGGATAGTGAAAAGTGTGCAACTGACAAAATGCTTATTATAATAATAATAAAAACTTTTTGTCTGTTTACTATTTTTCGATGCGTTTCACAACAACCGAGATAACCGAGATACATCGGCTCAAAGAAGATAGTTAAAAGGGTCTCTGTATATTTTTACATGTTCTTGATACCTAAAATGATCACAACTTGTAAAAAAAGCTATTCCGGAAAATGCAGTTGTGACTTCATTTACTCTGCCAAGAAACACAAAACGTCKGAAATTGTTGAAATGAAAAAAAAATTTGTAGTATTCATAGAAATAAACTAAACTTGAACTAACTACACTGCTCCATCTCGCCTTTTAAACAATTCCGCTAGACCAATTATATAATAAATGTATAAGGAGAGTTTGCAGAACTCTATACAATTACATCAAACAAGCACAATCTTTCTGACACTTCACCTTTTATTAGTCTGATTTAATATTGAAGCTTTGTAAGAATGATAGTTTGAACTATAACTAGAATAAATCGAGAATGATGTTATGAACTCAAGCCATTCATTTCAAAGGACAACGTTTTTATTAGAGTTCTAATCGAGTTCAGTTATTTAAGAACTTTTCCAGTTTTCTAAATTGCAAACGTCATATCAAAAGCTATCGAAAAAATCGAACACCGAAAAGAATGATGATCGGATTTTTTAAGGTCAGAATATGTAGGTGGATTTATCAACAGTGGAAATCTGGATAGAACATTTTTAGAAACACATCACTTTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATGTTCTTGATACCTAAAATGA</pcr_primer_p1>
		<pcr_primer_p2>GTTCTGCAAACTCTCCTTATACA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ACATGTTCTTGATACCTAAAATGATCACAACTTGTAAAAAAAGCTATTCCGGAAAATGCAGTTGTGACTTCATTTACTCTGCCAAGAAACACAAAACGTCGGAAATTGTTGAAATGAAAAAAAAATTTGTAGTATTCATAGAAATAAACTAAACTTGAACTAACTACACTGCTCCATCTCGCCTTTTAAACAATTCCGCTAGACCAATTATATAATAAATGTATAAGGAGAGTTTGCAGAAC</canonical_amplicon>
		<polymorphic_amplicon>ACATGTTCTTGATACCTAAAATGATCACAACTTGTAAAAAAAGCTATTCCGGAAAATGCAGTTGTGACTTCATTTACTCTGCCAAGAAACACAAAACGTCKGAAATTGTTGAAATGAAAAAAAAATTTGTAGTATTCATAGAAATAAACTAAACTTGAACTAACTACACTGCTCCATCTCGCCTTTTAAACAATTCCGCTAGACCAATTATATAATAAATGTATAAGGAGAGTTTGCAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24404</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>758343</contig_pos>
        <strand>+</strand>
        <context>CACCTTTTAT[C/T]AGTCTGATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATACAATTACATCAAACAAGCACAATCTTTCTGACACTTCACCTTTTAT</left_flank>
        <right_flank>AGTCTGATTTAATATTGAAGCTTTGTAAGAATGATAGTTTGAACTATAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCACCCAAATTGTAGTTTTTATGGCCTAGATGTCTCGGTTTGTGTGGAGGATAGTGAAAAGTGTGCAACTGACAAAATGCTTATTATAATAATAATAAAAACTTTTTGTCTGTTTACTATTTTTCGATGCGTTTCACAACAACCGAGATAACCGAGATACATCGGCTCAAAGAAGATAGTTAAAAGGGTCTCTGTATATTTTTACATGTTCTTGATACCTAAAATGATCACAACTTGTAAAAAAAGCTATTCCGGAAAATGCAGTTGTGACTTCATTTACTCTGCCAAGAAACACAAAACGTCGGAAATTGTTGAAATGAAAAAAAAATTTGTAGTATTCATAGAAATAAACTAAACTTGAACTAACTACACTGCTCCATCTCGCCTTTTAAACAATTCCGCTAGACCAATTATATAATAAATGTATAAGGAGAGTTTGCAGAACTCTATACAATTACATCAAACAAGCACAATCTTTCTGACACTTCACCTTTTATTAGTCTGATTTAATATTGAAGCTTTGTAAGAATGATAGTTTGAACTATAACTAGAATAAATCGAGAATGATGTTATGAACTCAAGCCATTCATTTCAAAGGACAACGTTTTTATTAGAGTTCTAATCGAGTTCAGTTATTTAAGAACTTTTCCAGTTTTCTAAATTGCAAACGTCATATCAAAAGCTATCGAAAAAATCGAACACCGAAAAGAATGATGATCGGATTTTTTAAGGTCAGAATATGTAGGTGGATTTATCAACAGTGGAAATCTGGATAGAACATTTTTAGAAACACATCACTTTCTTGAAAACTTGGCATAAAACAAGGTTTGAAAAGAAATTTCAACAGGATTATATTTACGTTTTTTGAAACTTCACTCAAAAAAAAAAAGGAAAAAAAGGGAAAAAAAAACCAACCCAGGAAGACGTGTCTGCTCAGATCCATTGTTCAGGCTGGCATAGAAACATTGCACACGACTGGAGACGAAACCGGAAGTTTG</canonical>
            <polymorphic>TGGCACCCAAATTGTAGTTTTTATGGCCTAGATGTCTCGGTTTGTGTGGAGGATAGTGAAAAGTGTGCAACTGACAAAATGCTTATTATAATAATAATAAAAACTTTTTGTCTGTTTACTATTTTTCGATGCGTTTCACAACAACCGAGATAACCGAGATACATCGGCTCAAAGAAGATAGTTAAAAGGGTCTCTGTATATTTTTACATGTTCTTGATACCTAAAATGATCACAACTTGTAAAAAAAGCTATTCCGGAAAATGCAGTTGTGACTTCATTTACTCTGCCAAGAAACACAAAACGTCGGAAATTGTTGAAATGAAAAAAAAATTTGTAGTATTCATAGAAATAAACTAAACTTGAACTAACTACACTGCTCCATCTCGCCTTTTAAACAATTCCGCTAGACCAATTATATAATAAATGTATAAGGAGAGTTTGCAGAACTCTATACAATTACATCAAACAAGCACAATCTTTCTGACACTTCACCTTTTATYAGTCTGATTTAATATTGAAGCTTTGTAAGAATGATAGTTTGAACTATAACTAGAATAAATCGAGAATGATGTTATGAACTCAAGCCATTCATTTCAAAGGACAACGTTTTTATTAGAGTTCTAATCGAGTTCAGTTATTTAAGAACTTTTCCAGTTTTCTAAATTGCAAACGTCATATCAAAAGCTATCGAAAAAATCGAACACCGAAAAGAATGATGATCGGATTTTTTAAGGTCAGAATATGTAGGTGGATTTATCAACAGTGGAAATCTGGATAGAACATTTTTAGAAACACATCACTTTCTTGAAAACTTGGCATAAAACAAGGTTTGAAAAGAAATTTCAACAGGATTATATTTACGTTTTTTGAAACTTCACTCAAAAAAAAAAAGGAAAAAAAGGGAAAAAAAAACCAACCCAGGAAGACGTGTCTGCTCAGATCCATTGTTCAGGCTGGCATAGAAACATTGCACACGACTGGAGACGAAACCGGAAGTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTAACTACACTGCTCCATCTC</pcr_primer_p1>
		<pcr_primer_p2>ATAAAAACGTTGTCCTTTGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AACTAACTACACTGCTCCATCTCGCCTTTTAAACAATTCCGCTAGACCAATTATATAATAAATGTATAAGGAGAGTTTGCAGAACTCTATACAATTACATCAAACAAGCACAATCTTTCTGACACTTCACCTTTTATTAGTCTGATTTAATATTGAAGCTTTGTAAGAATGATAGTTTGAACTATAACTAGAATAAATCGAGAATGATGTTATGAACTCAAGCCATTCATTTCAAAGGACAACGTTTTTAT</canonical_amplicon>
		<polymorphic_amplicon>AACTAACTACACTGCTCCATCTCGCCTTTTAAACAATTCCGCTAGACCAATTATATAATAAATGTATAAGGAGAGTTTGCAGAACTCTATACAATTACATCAAACAAGCACAATCTTTCTGACACTTCACCTTTTATYAGTCTGATTTAATATTGAAGCTTTGTAAGAATGATAGTTTGAACTATAACTAGAATAAATCGAGAATGATGTTATGAACTCAAGCCATTCATTTCAAAGGACAACGTTTTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24405</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>759989</contig_pos>
        <strand>+</strand>
        <context>AATCACGCAC[G/T]GATGAAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTGGTCCATTTTGCTCTTTTTGAAGTGGAACTTTATTTAAATCACGCAC</left_flank>
        <right_flank>GATGAAATTTTCTTTTTTTTTGTACTTTTGTTTTACTCTTGCACGCAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCCTTACAAGGGAATGTCGTTCAGGAAGCTTGTAAGAATTTTCTTTAAATTGGCTCATTTATAGAATCGAGTATGGGCTTTTACGTAATATTAGTCTCTACCTGCGAAAATCGCTGAAACTCGAGAAAAACCGATCTGAAATTATAGCATTTTCACCAGTCTCATCGCCTCCATTCTCCGGTAGCATACTGGCTAGAAGGAAGGACCACGAAAGCACACATGCTGGTTCGGGTCCTCGTTCCTTTATTTTTATTTTTCTTATTTTTTCAAACTTAAAAAGTCGTTTTCGAGGGGTTTGGCAAATGGGAAACACTTTTTTGAAAATTTTCTATGATCTGCAATGATTTTCGAATAATTTCAAAAAACAATTTTTTTTGAAAAAAATCACCATGGAGTCCCACACTTTCTTTGACGAATTTTTGAAAATTTTTTCAGAACTCTCCAGAAATTGGTCCATTTTGCTCTTTTTGAAGTGGAACTTTATTTAAATCACGCACTGATGAAATTTTCTTTTTTTTTGTACTTTTGTTTTACTCTTGCACGCAATGCCGTGGAGGAAGGGGAGAAGAAGGGAGGCGATGAGACTGGTGGAAATGCTATAATTTCAGATCGATTTTTCTCGAGTTTCGGCGATTTTTGCAGGTAGAAACTATTATTACGTAAAAGCCCATACTCGATTCTATAAATGAGCCAATTTAGAAAAATTCTGAAGAGCTTTCTGAACGACATTCCCTTGTTAATATCTAATATTGAGCCAGAAAAATTAAAATACAGAAGGAGAAATGAACAATACGTTCACAAGTTTTTTGTGCTAGAAATAAGGAAAGCAGCATTTCGAGGTGTTGCTGAAAGTTCTTGTGATACAGAAAAATGAAAAAAAAATATAAAAATTGAACAGCGTACAGGAAAAACTATTCCAAAGAAATTCTAAAGCTGAAGTTGATTGAAATCAAGCTTTGTCAGAGTAGGGCAATAGAATATCCAATTCTCTGAAATTT</canonical>
            <polymorphic>TATCCTTACAAGGGAATGTCGTTCAGGAAGCTTGTAAGAATTTTCTTTAAATTGGCTCATTTATAGAATCGAGTATGGGCTTTTACGTAATATTAGTCTCTACCTGCGAAAATCGCTGAAACTCGAGAAAAACCGATCTGAAATTATAGCATTTTCACCAGTCTCATCGCCTCCATTCTCCGGTAGCATACTGGCTAGAAGGAAGGACCACGAAAGCACACATGCTGGTTCGGGTCCTCGTTCCTTTATTTTTATTTTTCTTATTTTTTCAAACTTAAAAAGTCGTTTTCGAGGGGTTTGGCAAATGGGAAACACTTTTTTGAAAATTTTCTATGATCTGCAATGATTTTCGAATAATTTCAAAAAACAATTTTTTTTGAAAAAAATCACCATGGAGTCCCACACTTTCTTTGACGAATTTTTGAAAATTTTTTCAGAACTCTCCAGAAATTGGTCCATTTTGCTCTTTTTGAAGTGGAACTTTATTTAAATCACGCACKGATGAAATTTTCTTTTTTTTTGTACTTTTGTTTTACTCTTGCACGCAATGCCGTGGAGGAAGGGGAGAAGAAGGGAGGCGATGAGACTGGTGGAAATGCTATAATTTCAGATCGATTTTTCTCGAGTTTCGGCGATTTTTGCAGGTAGAAACTATTATTACGTAAAAGCCCATACTCGATTCTATAAATGAGCCAATTTAGAAAAATTCTGAAGAGCTTTCTGAACGACATTCCCTTGTTAATATCTAATATTGAGCCAGAAAAATTAAAATACAGAAGGAGAAATGAACAATACGTTCACAAGTTTTTTGTGCTAGAAATAAGGAAAGCAGCATTTCGAGGTGTTGCTGAAAGTTCTTGTGATACAGAAAAATGAAAAAAAAATATAAAAATTGAACAGCGTACAGGAAAAACTATTCCAAAGAAATTCTAAAGCTGAAGTTGATTGAAATCAAGCTTTGTCAGAGTAGGGCAATAGAATATCCAATTCTCTGAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGGTCCATTTTGCTCTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTAATTTTTCTGGCTCAATA</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>ATTGGTCCATTTTGCTCTTTTTGAAGTGGAACTTTATTTAAATCACGCACTGATGAAATTTTCTTTTTTTTTGTACTTTTGTTTTACTCTTGCACGCAATGCCGTGGAGGAAGGGGAGAAGAAGGGAGGCGATGAGACTGGTGGAAATGCTATAATTTCAGATCGATTTTTCTCGAGTTTCGGCGATTTTTGCAGGTAGAAACTATTATTACGTAAAAGCCCATACTCGATTCTATAAATGAGCCAATTTAGAAAAATTCTGAAGAGCTTTCTGAACGACATTCCCTTGTTAATATCTAATATTGAGCCAGAAAAATTAAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATTGGTCCATTTTGCTCTTTTTGAAGTGGAACTTTATTTAAATCACGCACKGATGAAATTTTCTTTTTTTTTGTACTTTTGTTTTACTCTTGCACGCAATGCCGTGGAGGAAGGGGAGAAGAAGGGAGGCGATGAGACTGGTGGAAATGCTATAATTTCAGATCGATTTTTCTCGAGTTTCGGCGATTTTTGCAGGTAGAAACTATTATTACGTAAAAGCCCATACTCGATTCTATAAATGAGCCAATTTAGAAAAATTCTGAAGAGCTTTCTGAACGACATTCCCTTGTTAATATCTAATATTGAGCCAGAAAAATTAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24406</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>773117</contig_pos>
        <strand>+</strand>
        <context>CGGGAAARAA[A/G]TGGTAAMGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAA</left_flank>
        <right_flank>TGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTTCTTTCGATTCTGAATTTTTGGCTTCAAAACGATCAGTCCAATGCTCGATGGTAGGAACAGTAGGAGATCCTTCTTTATCTATTTCTTTCTATTTCTTGTCAAAATCACAGTTTTTCAAACCATAAAGAAATGAAAATAAAATAGCATTTTGAAAGTGTAGACGATAAGGGACGGTAGCAAGCGACATGCTCGCCAACGACAATAAGTAGGAATGAGGCAAAGTGTGTACATCAAGTCCGTGAGATACTCTATCTAACAAAAACACATCCGTCAAGAAAAACAGTCCCACTGACCAGATCTCAAAGTTGAGCATTCAAAATCGAAAGAAACTTATTTGCCAACCTAATATGTGATACAAACGGATTTAAAATATAAAACGGTTGGTAGACAATTCTTTTTTTTAAACGGTTAAGCTTTTTGTGGTAAGACTCGGGGATGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAATCGGTCCCTCCACCTCTTCTGGCTCGAATTCAGGAAGGCTTTCGAGGAGTCTGACATCGCGTAAATGATGTGTTTCGATGTTGTGATGGACGATGCGCTCCATGTAAGAAGCTCTGAAGTTGCATTCATCGCATTTGAGTTTACAAATCATCGGATTCTCATAGTGTCCGTCGCGGTGCTTGCGGAACTCAATGATGTTTTGATTTCTATATCCACAGTCGATGCACTGGCGCGAGACTGAAAAAAAAACGATTACTTGTTCAGATGATATAGGATTTCCCAACTTCAAAGAACCAAAACATTTTGCAGAAAC</canonical>
            <polymorphic>TTCTTTCTTTCGATTCTGAATTTTTGGCTTCAAAACGATCAGTCCAATGCTCGATGGTAGGAACAGTAGGAGATCCTTCTTTATCTATTTCTTTCTATTTCTTGTCAAAATCACAGTTTTTCAAACCATAAAGAAATGAAAATAAAATAGCATTTTGAAAGTGTAGACGATAAGGGACGGTAGCAAGCGACATGCTCGCCAACGACAATAAGTAGGAATGAGGCAAAGTGTGTACATCAAGTCCGTGAGATACTCTATCTAACAAAAACACATCCGTCAAGAAAAACAGTCCCACTGACCAGATCTCAAAGTTGAGCATTCAAAATCGAAAGAAACTTATTTGCCAACCTAATATGTGATACAAACGGATTTAAAATATAAAACGGTTGGTAGACAATTCTTTTTTTTAAACGGTTAAGCTTTTTGTGGTAAGACTCGGGGATGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAARTGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAATCGGTCCCTCCACCTCTTCTGGCTCGAATTCAGGAAGGCTTTCGAGGAGTCTGACATCGCGTAAATGATGTGTTTCGATGTTGTGATGGACGATGCGCTCCATGTAAGAAGCTCTGAAGTTGCATTCATCGCATTTGAGTTTACAAATCATCGGATTCTCATAGTGTCCGTCGCGGTGCTTGCGGAACTCAATGATGTTTTGATTTCTATATCCACAGTCGATGCACTGGCGCGAGACTGAAAAAAAAACGATTACTTGTTCAGATGATATAGGATTTCCCAACTTCAAAGAACCAAAACATTTTGCAGAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAAATGACAATGTTACATGA</pcr_primer_p1>
		<pcr_primer_p2>ATTCGTACCACTCAGAAGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAAT</canonical_amplicon>
		<polymorphic_amplicon>TGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAARTGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24407</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>773201</contig_pos>
        <strand>+</strand>
        <context>GTAACTAMAA[A/C]TAAGTTAAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAA</left_flank>
        <right_flank>TAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATTTCTTTCTATTTCTTGTCAAAATCACAGTTTTTCAAACCATAAAGAAATGAAAATAAAATAGCATTTTGAAAGTGTAGACGATAAGGGACGGTAGCAAGCGACATGCTCGCCAACGACAATAAGTAGGAATGAGGCAAAGTGTGTACATCAAGTCCGTGAGATACTCTATCTAACAAAAACACATCCGTCAAGAAAAACAGTCCCACTGACCAGATCTCAAAGTTGAGCATTCAAAATCGAAAGAAACTTATTTGCCAACCTAATATGTGATACAAACGGATTTAAAATATAAAACGGTTGGTAGACAATTCTTTTTTTTAAACGGTTAAGCTTTTTGTGGTAAGACTCGGGGATGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAATCGGTCCCTCCACCTCTTCTGGCTCGAATTCAGGAAGGCTTTCGAGGAGTCTGACATCGCGTAAATGATGTGTTTCGATGTTGTGATGGACGATGCGCTCCATGTAAGAAGCTCTGAAGTTGCATTCATCGCATTTGAGTTTACAAATCATCGGATTCTCATAGTGTCCGTCGCGGTGCTTGCGGAACTCAATGATGTTTTGATTTCTATATCCACAGTCGATGCACTGGCGCGAGACTGAAAAAAAAACGATTACTTGTTCAGATGATATAGGATTTCCCAACTTCAAAGAACCAAAACATTTTGCAGAAACTCACTTTCACAGTCTAGCTCCTTGTCCCAATCCTTTCGTGGGCGATTAAGACCAAAATCTTTATTACCAAAAAGACCCAATCCC</canonical>
            <polymorphic>CTATTTCTTTCTATTTCTTGTCAAAATCACAGTTTTTCAAACCATAAAGAAATGAAAATAAAATAGCATTTTGAAAGTGTAGACGATAAGGGACGGTAGCAAGCGACATGCTCGCCAACGACAATAAGTAGGAATGAGGCAAAGTGTGTACATCAAGTCCGTGAGATACTCTATCTAACAAAAACACATCCGTCAAGAAAAACAGTCCCACTGACCAGATCTCAAAGTTGAGCATTCAAAATCGAAAGAAACTTATTTGCCAACCTAATATGTGATACAAACGGATTTAAAATATAAAACGGTTGGTAGACAATTCTTTTTTTTAAACGGTTAAGCTTTTTGTGGTAAGACTCGGGGATGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAMTAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAATCGGTCCCTCCACCTCTTCTGGCTCGAATTCAGGAAGGCTTTCGAGGAGTCTGACATCGCGTAAATGATGTGTTTCGATGTTGTGATGGACGATGCGCTCCATGTAAGAAGCTCTGAAGTTGCATTCATCGCATTTGAGTTTACAAATCATCGGATTCTCATAGTGTCCGTCGCGGTGCTTGCGGAACTCAATGATGTTTTGATTTCTATATCCACAGTCGATGCACTGGCGCGAGACTGAAAAAAAAACGATTACTTGTTCAGATGATATAGGATTTCCCAACTTCAAAGAACCAAAACATTTTGCAGAAACTCACTTTCACAGTCTAGCTCCTTGTCCCAATCCTTTCGTGGGCGATTAAGACCAAAATCTTTATTACCAAAAAGACCCAATCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAAATGACAATGTTACATGA</pcr_primer_p1>
		<pcr_primer_p2>ATTCGTACCACTCAGAAGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAAT</canonical_amplicon>
		<polymorphic_amplicon>TGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAMTAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24408</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>773226</contig_pos>
        <strand>+</strand>
        <context>TTTAGGGGGW[A/T]TATYAAACAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGA</left_flank>
        <right_flank>TATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCACAGTTTTTCAAACCATAAAGAAATGAAAATAAAATAGCATTTTGAAAGTGTAGACGATAAGGGACGGTAGCAAGCGACATGCTCGCCAACGACAATAAGTAGGAATGAGGCAAAGTGTGTACATCAAGTCCGTGAGATACTCTATCTAACAAAAACACATCCGTCAAGAAAAACAGTCCCACTGACCAGATCTCAAAGTTGAGCATTCAAAATCGAAAGAAACTTATTTGCCAACCTAATATGTGATACAAACGGATTTAAAATATAAAACGGTTGGTAGACAATTCTTTTTTTTAAACGGTTAAGCTTTTTGTGGTAAGACTCGGGGATGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAATCGGTCCCTCCACCTCTTCTGGCTCGAATTCAGGAAGGCTTTCGAGGAGTCTGACATCGCGTAAATGATGTGTTTCGATGTTGTGATGGACGATGCGCTCCATGTAAGAAGCTCTGAAGTTGCATTCATCGCATTTGAGTTTACAAATCATCGGATTCTCATAGTGTCCGTCGCGGTGCTTGCGGAACTCAATGATGTTTTGATTTCTATATCCACAGTCGATGCACTGGCGCGAGACTGAAAAAAAAACGATTACTTGTTCAGATGATATAGGATTTCCCAACTTCAAAGAACCAAAACATTTTGCAGAAACTCACTTTCACAGTCTAGCTCCTTGTCCCAATCCTTTCGTGGGCGATTAAGACCAAAATCTTTATTACCAAAAAGACCCAATCCCACATTGTAACCACGCTGCAAACGTT</canonical>
            <polymorphic>ATCACAGTTTTTCAAACCATAAAGAAATGAAAATAAAATAGCATTTTGAAAGTGTAGACGATAAGGGACGGTAGCAAGCGACATGCTCGCCAACGACAATAAGTAGGAATGAGGCAAAGTGTGTACATCAAGTCCGTGAGATACTCTATCTAACAAAAACACATCCGTCAAGAAAAACAGTCCCACTGACCAGATCTCAAAGTTGAGCATTCAAAATCGAAAGAAACTTATTTGCCAACCTAATATGTGATACAAACGGATTTAAAATATAAAACGGTTGGTAGACAATTCTTTTTTTTAAACGGTTAAGCTTTTTGTGGTAAGACTCGGGGATGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGAWTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAATCGGTCCCTCCACCTCTTCTGGCTCGAATTCAGGAAGGCTTTCGAGGAGTCTGACATCGCGTAAATGATGTGTTTCGATGTTGTGATGGACGATGCGCTCCATGTAAGAAGCTCTGAAGTTGCATTCATCGCATTTGAGTTTACAAATCATCGGATTCTCATAGTGTCCGTCGCGGTGCTTGCGGAACTCAATGATGTTTTGATTTCTATATCCACAGTCGATGCACTGGCGCGAGACTGAAAAAAAAACGATTACTTGTTCAGATGATATAGGATTTCCCAACTTCAAAGAACCAAAACATTTTGCAGAAACTCACTTTCACAGTCTAGCTCCTTGTCCCAATCCTTTCGTGGGCGATTAAGACCAAAATCTTTATTACCAAAAAGACCCAATCCCACATTGTAACCACGCTGCAAACGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAAAATGACAATGTTACATGA</pcr_primer_p1>
		<pcr_primer_p2>ATTCGTACCACTCAGAAGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAAT</canonical_amplicon>
		<polymorphic_amplicon>TGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGAWTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24409</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>773230</contig_pos>
        <strand>+</strand>
        <context>GGGGGWWTAT[C/T]AAACAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGATTAT</left_flank>
        <right_flank>AAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTTTTTCAAACCATAAAGAAATGAAAATAAAATAGCATTTTGAAAGTGTAGACGATAAGGGACGGTAGCAAGCGACATGCTCGCCAACGACAATAAGTAGGAATGAGGCAAAGTGTGTACATCAAGTCCGTGAGATACTCTATCTAACAAAAACACATCCGTCAAGAAAAACAGTCCCACTGACCAGATCTCAAAGTTGAGCATTCAAAATCGAAAGAAACTTATTTGCCAACCTAATATGTGATACAAACGGATTTAAAATATAAAACGGTTGGTAGACAATTCTTTTTTTTAAACGGTTAAGCTTTTTGTGGTAAGACTCGGGGATGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAATCGGTCCCTCCACCTCTTCTGGCTCGAATTCAGGAAGGCTTTCGAGGAGTCTGACATCGCGTAAATGATGTGTTTCGATGTTGTGATGGACGATGCGCTCCATGTAAGAAGCTCTGAAGTTGCATTCATCGCATTTGAGTTTACAAATCATCGGATTCTCATAGTGTCCGTCGCGGTGCTTGCGGAACTCAATGATGTTTTGATTTCTATATCCACAGTCGATGCACTGGCGCGAGACTGAAAAAAAAACGATTACTTGTTCAGATGATATAGGATTTCCCAACTTCAAAGAACCAAAACATTTTGCAGAAACTCACTTTCACAGTCTAGCTCCTTGTCCCAATCCTTTCGTGGGCGATTAAGACCAAAATCTTTATTACCAAAAAGACCCAATCCCACATTGTAACCACGCTGCAAACGTTGGAG</canonical>
            <polymorphic>CAGTTTTTCAAACCATAAAGAAATGAAAATAAAATAGCATTTTGAAAGTGTAGACGATAAGGGACGGTAGCAAGCGACATGCTCGCCAACGACAATAAGTAGGAATGAGGCAAAGTGTGTACATCAAGTCCGTGAGATACTCTATCTAACAAAAACACATCCGTCAAGAAAAACAGTCCCACTGACCAGATCTCAAAGTTGAGCATTCAAAATCGAAAGAAACTTATTTGCCAACCTAATATGTGATACAAACGGATTTAAAATATAAAACGGTTGGTAGACAATTCTTTTTTTTAAACGGTTAAGCTTTTTGTGGTAAGACTCGGGGATGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGATTATYAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAATCGGTCCCTCCACCTCTTCTGGCTCGAATTCAGGAAGGCTTTCGAGGAGTCTGACATCGCGTAAATGATGTGTTTCGATGTTGTGATGGACGATGCGCTCCATGTAAGAAGCTCTGAAGTTGCATTCATCGCATTTGAGTTTACAAATCATCGGATTCTCATAGTGTCCGTCGCGGTGCTTGCGGAACTCAATGATGTTTTGATTTCTATATCCACAGTCGATGCACTGGCGCGAGACTGAAAAAAAAACGATTACTTGTTCAGATGATATAGGATTTCCCAACTTCAAAGAACCAAAACATTTTGCAGAAACTCACTTTCACAGTCTAGCTCCTTGTCCCAATCCTTTCGTGGGCGATTAAGACCAAAATCTTTATTACCAAAAAGACCCAATCCCACATTGTAACCACGCTGCAAACGTTGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAAAATGACAATGTTACATGA</pcr_primer_p1>
		<pcr_primer_p2>ATTCGTACCACTCAGAAGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAAT</canonical_amplicon>
		<polymorphic_amplicon>TGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGATTATYAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24410</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>773481</contig_pos>
        <strand>+</strand>
        <context>TCCGTCGCGG[G/T]GCTTGCGGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATCGCATTTGAGTTTACAAATCATCGGATTCTCATAGTGTCCGTCGCGG</left_flank>
        <right_flank>GCTTGCGGAACTCAATGATGTTTTGATTTCTATATCCACAGTCGATGCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGGATTTAAAATATAAAACGGTTGGTAGACAATTCTTTTTTTTAAACGGTTAAGCTTTTTGTGGTAAGACTCGGGGATGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAATCGGTCCCTCCACCTCTTCTGGCTCGAATTCAGGAAGGCTTTCGAGGAGTCTGACATCGCGTAAATGATGTGTTTCGATGTTGTGATGGACGATGCGCTCCATGTAAGAAGCTCTGAAGTTGCATTCATCGCATTTGAGTTTACAAATCATCGGATTCTCATAGTGTCCGTCGCGGTGCTTGCGGAACTCAATGATGTTTTGATTTCTATATCCACAGTCGATGCACTGGCGCGAGACTGAAAAAAAAACGATTACTTGTTCAGATGATATAGGATTTCCCAACTTCAAAGAACCAAAACATTTTGCAGAAACTCACTTTCACAGTCTAGCTCCTTGTCCCAATCCTTTCGTGGGCGATTAAGACCAAAATCTTTATTACCAAAAAGACCCAATCCCACATTGTAACCACGCTGCAAACGTTGGAGTGGAGTCATTGAGTCGGGATCTGGCTTCTTCTTCGGTTTGAATGGTTTGCCCTCTCTCCACTTAAAGAACGTTCTCATCATTTCATCCACTTGGCATTCCTCTTGAGCAGAGCCTCGGACGTAAAATCGTGGACCAAATGAGCTAAGGTTAGGCTGGTCGGTGGTCGATGAGCTTTGTGCCTGATGGTCATCTTCAACTCTGTTATCCGAAACGTTGTTAGTTTCAGTCGGATGGTTGTCACCGACTTCAG</canonical>
            <polymorphic>ACGGATTTAAAATATAAAACGGTTGGTAGACAATTCTTTTTTTTAAACGGTTAAGCTTTTTGTGGTAAGACTCGGGGATGAAAAATGACAATGTTACATGAGAGATGGTGAGGTGGTTTGTTTGTCGGGAAAGAAATGGTAACGCTGTAGGGAATTGAAAAAAAAAACAATTAAGAAAATGTTATTTCTGAAAGGGCGAGAAAAAAAATGTAACTAAAAATAAGTTAAGCGTGGTTTAGGGGGATTATAAAACAAAAAAATGAACAAAAAATGGTGAACTTTTCACCAGCGACGTTTGCGGCGTCTCTTCTGAGTGGTACGAATCGGTCCCTCCACCTCTTCTGGCTCGAATTCAGGAAGGCTTTCGAGGAGTCTGACATCGCGTAAATGATGTGTTTCGATGTTGTGATGGACGATGCGCTCCATGTAAGAAGCTCTGAAGTTGCATTCATCGCATTTGAGTTTACAAATCATCGGATTCTCATAGTGTCCGTCGCGGKGCTTGCGGAACTCAATGATGTTTTGATTTCTATATCCACAGTCGATGCACTGGCGCGAGACTGAAAAAAAAACGATTACTTGTTCAGATGATATAGGATTTCCCAACTTCAAAGAACCAAAACATTTTGCAGAAACTCACTTTCACAGTCTAGCTCCTTGTCCCAATCCTTTCGTGGGCGATTAAGACCAAAATCTTTATTACCAAAAAGACCCAATCCCACATTGTAACCACGCTGCAAACGTTGGAGTGGAGTCATTGAGTCGGGATCTGGCTTCTTCTTCGGTTTGAATGGTTTGCCCTCTCTCCACTTAAAGAACGTTCTCATCATTTCATCCACTTGGCATTCCTCTTGAGCAGAGCCTCGGACGTAAAATCGTGGACCAAATGAGCTAAGGTTAGGCTGGTCGGTGGTCGATGAGCTTTGTGCCTGATGGTCATCTTCAACTCTGTTATCCGAAACGTTGTTAGTTTCAGTCGGATGGTTGTCACCGACTTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>118 90 81 64 62 60 58 46 45 43 42 37 32 31 31 29 19 19 16 13 12 11 11 10 9 6 5</canonical_bands>
                <polymorphic_bands>118 90 81 64 62 60 58 49 46 45 43 42 32 31 31 29 19 19 16 13 11 11 10 9 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAATGATGTGTTTCGATGTTG</pcr_primer_p1>
		<pcr_primer_p2>AAAATGTTTTGGTTCTTTGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TAAATGATGTGTTTCGATGTTGTGATGGACGATGCGCTCCATGTAAGAAGCTCTGAAGTTGCATTCATCGCATTTGAGTTTACAAATCATCGGATTCTCATAGTGTCCGTCGCGGTGCTTGCGGAACTCAATGATGTTTTGATTTCTATATCCACAGTCGATGCACTGGCGCGAGACTGAAAAAAAAACGATTACTTGTTCAGATGATATAGGATTTCCCAACTTCAAAGAACCAAAACATTTT</canonical_amplicon>
		<polymorphic_amplicon>TAAATGATGTGTTTCGATGTTGTGATGGACGATGCGCTCCATGTAAGAAGCTCTGAAGTTGCATTCATCGCATTTGAGTTTACAAATCATCGGATTCTCATAGTGTCCGTCGCGGKGCTTGCGGAACTCAATGATGTTTTGATTTCTATATCCACAGTCGATGCACTGGCGCGAGACTGAAAAAAAAACGATTACTTGTTCAGATGATATAGGATTTCCCAACTTCAAAGAACCAAAACATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24411</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>774523</contig_pos>
        <strand>+</strand>
        <context>TCCAGGTCCG[C/T]CTGAATTCGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGCAAAATGGTAAGAACTGTACGAGCACTGGGTGCAACTCCAGGTCCG</left_flank>
        <right_flank>CTGAATTCGTGCATGTGATGGCGGAAGTGGCGCTGGAGAGACGAAATATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGCACTGGCACTCCGTCTGGATCTAGTGCGCGGACCATCACTGGGAGGTTGACTGGGCGCTTGCTTGGCTCTAGCGCTTTGCCTCGTATTTGGTCTCGTGTTGCTTTCCGATGCTTCCTTCTTGCTCGAATCGGTTGCTCTCCGTTTTGCTGGTGGTGCACTGGATGTGGTAGATTTTCTGGTGCGGAGAACACGAGTAGATGGTTCAACCTCCATCGACCTTCCACGAAGTTGACGAGTGCTCGGAGTTGACATCGGGACCGCTGGCTCTACGGTTCTGTTTTTCACTAGACTCATCTTTCTATAAGCATTGTCCATTTTGTTTTCGTAGTGAACCCAACGTTTGAACTGAAAAAAAGTTGTAAGGTTTTGAGATAATGTACTAATCACGGTTACCTCTGTTTCACTTTCTGGAATATCCATGTGAAGTTTGACGTGCTTATAGACATCAGCAAAATGGTAAGAACTGTACGAGCACTGGGTGCAACTCCAGGTCCGCCTGAATTCGTGCATGTGATGGCGGAAGTGGCGCTGGAGAGACGAAATATCCGAGTTGACGTAAGGGCACTGCGAGCAAAGAAAATGGATTTTCTTCTCATAGATCATTTTTTGTCCGTAGTTGATCATAGGTCCCACCATAAGATCCTTTCTCGCTAGCCACTTAACTGGTGGTTGAACGAGCGGGCCTATGAATCTGAAAAAAAATCAAATTGCAACTGTCAATTTTAATTCAACTTACCCAGAAGACGATCCTGGCAGCGATCCATTTGCTCCAGTATACATTGCTTGATTCTTGGTATCCTCGCCATTGGGATCATATTTCTTCCCCATGGGATGCATAGTGATGTTTCTTTTTTCGGGAGGGCAGCTGAGAAATGGACAATTTATCCATTTTCGGAAATTCTTAGATTCAAGCTTATACGTCTTATTAGATAATTGACGCTTCTCCCAGAGTTTTTTTACTTCCTTTGGAGCAAGATGGTCTGATTTTCGGTGAGA</canonical>
            <polymorphic>TCGCACTGGCACTCCGTCTGGATCTAGTGCGCGGACCATCACTGGGAGGTTGACTGGGCGCTTGCTTGGCTCTAGCGCTTTGCCTCGTATTTGGTCTCGTGTTGCTTTCCGATGCTTCCTTCTTGCTCGAATCGGTTGCTCTCCGTTTTGCTGGTGGTGCACTGGATGTGGTAGATTTTCTGGTGCGGAGAACACGAGTAGATGGTTCAACCTCCATCGACCTTCCACGAAGTTGACGAGTGCTCGGAGTTGACATCGGGACCGCTGGCTCTACGGTTCTGTTTTTCACTAGACTCATCTTTCTATAAGCATTGTCCATTTTGTTTTCGTAGTGAACCCAACGTTTGAACTGAAAAAAAGTTGTAAGGTTTTGAGATAATGTACTAATCACGGTTACCTCTGTTTCACTTTCTGGAATATCCATGTGAAGTTTGACGTGCTTATAGACATCAGCAAAATGGTAAGAACTGTACGAGCACTGGGTGCAACTCCAGGTCCGYCTGAATTCGTGCATGTGATGGCGGAAGTGGCGCTGGAGAGACGAAATATCCGAGTTGACGTAAGGGCACTGCGAGCAAAGAAAATGGATTTTCTTCTCATAGATCATTTTTTGTCCGTAGTTGATCATAGGTCCCACCATAAGATCCTTTCTCGCTAGCCACTTAACTGGTGGTTGAACGAGCGGGCCTATGAATCTGAAAAAAAATCAAATTGCAACTGTCAATTTTAATTCAACTTACCCAGAAGACGATCCTGGCAGCGATCCATTTGCTCCAGTATACATTGCTTGATTCTTGGTATCCTCGCCATTGGGATCATATTTCTTCCCCATGGGATGCATAGTGATGTTTCTTTTTTCGGGAGGGCAGCTGAGAAATGGACAATTTATCCATTTTCGGAAATTCTTAGATTCAAGCTTATACGTCTTATTAGATAATTGACGCTTCTCCCAGAGTTTTTTTACTTCCTTTGGAGCAAGATGGTCTGATTTTCGGTGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>480 262 235 23</canonical_bands>
                <polymorphic_bands>480 262 258</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACTAATCACGGTTACCTCTGTT</pcr_primer_p1>
		<pcr_primer_p2>CTATGATCAACTACGGACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TACTAATCACGGTTACCTCTGTTTCACTTTCTGGAATATCCATGTGAAGTTTGACGTGCTTATAGACATCAGCAAAATGGTAAGAACTGTACGAGCACTGGGTGCAACTCCAGGTCCGCCTGAATTCGTGCATGTGATGGCGGAAGTGGCGCTGGAGAGACGAAATATCCGAGTTGACGTAAGGGCACTGCGAGCAAAGAAAATGGATTTTCTTCTCATAGATCATTTTTTGTCCGTAGTTGATCATAG</canonical_amplicon>
		<polymorphic_amplicon>TACTAATCACGGTTACCTCTGTTTCACTTTCTGGAATATCCATGTGAAGTTTGACGTGCTTATAGACATCAGCAAAATGGTAAGAACTGTACGAGCACTGGGTGCAACTCCAGGTCCGYCTGAATTCGTGCATGTGATGGCGGAAGTGGCGCTGGAGAGACGAAATATCCGAGTTGACGTAAGGGCACTGCGAGCAAAGAAAATGGATTTTCTTCTCATAGATCATTTTTTGTCCGTAGTTGATCATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24412</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>774722</contig_pos>
        <strand>+</strand>
        <context>TATGAATCTG[C/T]AAAAAAATCA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTCGCTAGCCACTTAACTGGTGGTTGAACGAGCGGGCCTATGAATCTG</left_flank>
        <right_flank>AAAAAAATCAAATTGCAACTGTCAATTTTAATTCAACTTACCCAGAAGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATGGTTCAACCTCCATCGACCTTCCACGAAGTTGACGAGTGCTCGGAGTTGACATCGGGACCGCTGGCTCTACGGTTCTGTTTTTCACTAGACTCATCTTTCTATAAGCATTGTCCATTTTGTTTTCGTAGTGAACCCAACGTTTGAACTGAAAAAAAGTTGTAAGGTTTTGAGATAATGTACTAATCACGGTTACCTCTGTTTCACTTTCTGGAATATCCATGTGAAGTTTGACGTGCTTATAGACATCAGCAAAATGGTAAGAACTGTACGAGCACTGGGTGCAACTCCAGGTCCGCCTGAATTCGTGCATGTGATGGCGGAAGTGGCGCTGGAGAGACGAAATATCCGAGTTGACGTAAGGGCACTGCGAGCAAAGAAAATGGATTTTCTTCTCATAGATCATTTTTTGTCCGTAGTTGATCATAGGTCCCACCATAAGATCCTTTCTCGCTAGCCACTTAACTGGTGGTTGAACGAGCGGGCCTATGAATCTGAAAAAAAATCAAATTGCAACTGTCAATTTTAATTCAACTTACCCAGAAGACGATCCTGGCAGCGATCCATTTGCTCCAGTATACATTGCTTGATTCTTGGTATCCTCGCCATTGGGATCATATTTCTTCCCCATGGGATGCATAGTGATGTTTCTTTTTTCGGGAGGGCAGCTGAGAAATGGACAATTTATCCATTTTCGGAAATTCTTAGATTCAAGCTTATACGTCTTATTAGATAATTGACGCTTCTCCCAGAGTTTTTTTACTTCCTTTGGAGCAAGATGGTCTGATTTTCGGTGAGACATGATGTGGAATGACGCTCGAGTGTGGTTTGCGAAACGGCTTGGACACAAGTGGCAAGTATAGGGAAATCGGTCAAGAGTGGCTGGAGATAGTGCACACTGCGTTTGATAGACGGCTTGCAGTTGTACAGGCTGTTCCGGCGCTCTACTGCGGTCTCTGTTTTGAGGTGCCAAAACTTCGAGATTCAATGGCTCTGGT</canonical>
            <polymorphic>AGATGGTTCAACCTCCATCGACCTTCCACGAAGTTGACGAGTGCTCGGAGTTGACATCGGGACCGCTGGCTCTACGGTTCTGTTTTTCACTAGACTCATCTTTCTATAAGCATTGTCCATTTTGTTTTCGTAGTGAACCCAACGTTTGAACTGAAAAAAAGTTGTAAGGTTTTGAGATAATGTACTAATCACGGTTACCTCTGTTTCACTTTCTGGAATATCCATGTGAAGTTTGACGTGCTTATAGACATCAGCAAAATGGTAAGAACTGTACGAGCACTGGGTGCAACTCCAGGTCCGCCTGAATTCGTGCATGTGATGGCGGAAGTGGCGCTGGAGAGACGAAATATCCGAGTTGACGTAAGGGCACTGCGAGCAAAGAAAATGGATTTTCTTCTCATAGATCATTTTTTGTCCGTAGTTGATCATAGGTCCCACCATAAGATCCTTTCTCGCTAGCCACTTAACTGGTGGTTGAACGAGCGGGCCTATGAATCTGYAAAAAAATCAAATTGCAACTGTCAATTTTAATTCAACTTACCCAGAAGACGATCCTGGCAGCGATCCATTTGCTCCAGTATACATTGCTTGATTCTTGGTATCCTCGCCATTGGGATCATATTTCTTCCCCATGGGATGCATAGTGATGTTTCTTTTTTCGGGAGGGCAGCTGAGAAATGGACAATTTATCCATTTTCGGAAATTCTTAGATTCAAGCTTATACGTCTTATTAGATAATTGACGCTTCTCCCAGAGTTTTTTTACTTCCTTTGGAGCAAGATGGTCTGATTTTCGGTGAGACATGATGTGGAATGACGCTCGAGTGTGGTTTGCGAAACGGCTTGGACACAAGTGGCAAGTATAGGGAAATCGGTCAAGAGTGGCTGGAGATAGTGCACACTGCGTTTGATAGACGGCTTGCAGTTGTACAGGCTGTTCCGGCGCTCTACTGCGGTCTCTGTTTTGAGGTGCCAAAACTTCGAGATTCAATGGCTCTGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>305 213 201 146 88 47</canonical_bands>
                <polymorphic_bands>347 305 213 88 47</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATATCCGAGTTGACGTAAG</pcr_primer_p1>
		<pcr_primer_p2>AGCAATGTATACTGGAGCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAATATCCGAGTTGACGTAAGGGCACTGCGAGCAAAGAAAATGGATTTTCTTCTCATAGATCATTTTTTGTCCGTAGTTGATCATAGGTCCCACCATAAGATCCTTTCTCGCTAGCCACTTAACTGGTGGTTGAACGAGCGGGCCTATGAATCTGAAAAAAAATCAAATTGCAACTGTCAATTTTAATTCAACTTACCCAGAAGACGATCCTGGCAGCGATCCATTTGCTCCAGTATACATTGCT</canonical_amplicon>
		<polymorphic_amplicon>GAAATATCCGAGTTGACGTAAGGGCACTGCGAGCAAAGAAAATGGATTTTCTTCTCATAGATCATTTTTTGTCCGTAGTTGATCATAGGTCCCACCATAAGATCCTTTCTCGCTAGCCACTTAACTGGTGGTTGAACGAGCGGGCCTATGAATCTGYAAAAAAATCAAATTGCAACTGTCAATTTTAATTCAACTTACCCAGAAGACGATCCTGGCAGCGATCCATTTGCTCCAGTATACATTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24413</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>804973</contig_pos>
        <strand>+</strand>
        <context>GAGTAATTAG[A/G]KCGTTTGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTATTGTGTACTCTCTCAAAATTTAGTTTTGACACTTTTGAGTAATTAG</left_flank>
        <right_flank>TCGTTTGTTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGCGATTGCAATACACACCAGTGTGTCAGGAACATTTGAGCGTTTTTCGCAGTAGTAGTTCTGTCTGAGAGACCGCCAGTTCTTCATCGCCATGGCTTTTTTTCGGGCTTCTTCTTCTTTATGACCAGGATCCAACCATGTTTTTTTCTAACTACAAGAAGTCTCCAGAAAAGACAATTTCAAAAGAAATTGACCTTTAATCAGATTCGCGGGATATCGAAAAAAGAAAAAATAACCATGGTTTGAATTTTAATGATAAATGCAAGTTTTCGAGGTTTTCAAATTCGTTTTTCAAAGAATTTATAATTGTAAAGTTTTCTTTTAAAAACTAATTTTTATCTACAGCAATATGAGAGCTTCCTGCACAAATTGACTTTACTTCCTCATTTTTCTGATTATCTGAGGATAGAATGTGATTTGATTTTGAACCGACGTGACAAGTTTTTCTGTTATTGTGTACTCTCTCAAAATTTAGTTTTGACACTTTTGAGTAATTAGATCGTTTGTTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCACAGAAATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTATGAAGCGCTTCATCACAACAATTTTCAGTACGAGTCTTCTCAAAAACAAGCCGCATACCCATATTAGCAATTACCTTATATTCAATGCTTTCATTTTCCCCAAACGCCGCCGGAAACCAATTTCGTTTTTGGGCTCACTCGTACACACACACAAACACCAGAAGGTGGTA</canonical>
            <polymorphic>GCGCGATTGCAATACACACCAGTGTGTCAGGAACATTTGAGCGTTTTTCGCAGTAGTAGTTCTGTCTGAGAGACCGCCAGTTCTTCATCGCCATGGCTTTTTTTCGGGCTTCTTCTTCTTTATGACCAGGATCCAACCATGTTTTTTTCTAACTACAAGAAGTCTCCAGAAAAGACAATTTCAAAAGAAATTGACCTTTAATCAGATTCGCGGGATATCGAAAAAAGAAAAAATAACCATGGTTTGAATTTTAATGATAAATGCAAGTTTTCGAGGTTTTCAAATTCGTTTTTCAAAGAATTTATAATTGTAAAGTTTTCTTTTAAAAACTAATTTTTATCTACAGCAATATGAGAGCTTCCTGCACAAATTGACTTTACTTCCTCATTTTTCTGATTATCTGAGGATAGAATGTGATTTGATTTTGAACCGACGTGACAAGTTTTTCTGTTATTGTGTACTCTCTCAAAATTTAGTTTTGACACTTTTGAGTAATTAGRTCGTTTGTTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCACAGAAATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTATGAAGCGCTTCATCACAACAATTTTCAGTACGAGTCTTCTCAAAAACAAGCCGCATACCCATATTAGCAATTACCTTATATTCAATGCTTTCATTTTCCCCAAACGCCGCCGGAAACCAATTTCGTTTTTGGGCTCACTCGTACACACACACAAACACCAGAAGGTGGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>502 369 129</canonical_bands>
                <polymorphic_bands>871 129</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGCACAAATTGACTTTACTTC</pcr_primer_p1>
		<pcr_primer_p2>GTTTTGTCGAAAGTGAGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CTGCACAAATTGACTTTACTTCCTCATTTTTCTGATTATCTGAGGATAGAATGTGATTTGATTTTGAACCGACGTGACAAGTTTTTCTGTTATTGTGTACTCTCTCAAAATTTAGTTTTGACACTTTTGAGTAATTAGATCGTTTGTTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCACAGAAATTTTCTCACTTTCGACAAAAC</canonical_amplicon>
		<polymorphic_amplicon>CTGCACAAATTGACTTTACTTCCTCATTTTTCTGATTATCTGAGGATAGAATGTGATTTGATTTTGAACCGACGTGACAAGTTTTTCTGTTATTGTGTACTCTCTCAAAATTTAGTTTTGACACTTTTGAGTAATTAGRTCGTTTGTTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCACAGAAATTTTCTCACTTTCGACAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24414</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>804974</contig_pos>
        <strand>+</strand>
        <context>AGTAATTAGR[G/T]CGTTTGTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTATTGTGTACTCTCTCAAAATTTAGTTTTGACACTTTTGAGTAATTAGA</left_flank>
        <right_flank>CGTTTGTTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTT</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCGATTGCAATACACACCAGTGTGTCAGGAACATTTGAGCGTTTTTCGCAGTAGTAGTTCTGTCTGAGAGACCGCCAGTTCTTCATCGCCATGGCTTTTTTTCGGGCTTCTTCTTCTTTATGACCAGGATCCAACCATGTTTTTTTCTAACTACAAGAAGTCTCCAGAAAAGACAATTTCAAAAGAAATTGACCTTTAATCAGATTCGCGGGATATCGAAAAAAGAAAAAATAACCATGGTTTGAATTTTAATGATAAATGCAAGTTTTCGAGGTTTTCAAATTCGTTTTTCAAAGAATTTATAATTGTAAAGTTTTCTTTTAAAAACTAATTTTTATCTACAGCAATATGAGAGCTTCCTGCACAAATTGACTTTACTTCCTCATTTTTCTGATTATCTGAGGATAGAATGTGATTTGATTTTGAACCGACGTGACAAGTTTTTCTGTTATTGTGTACTCTCTCAAAATTTAGTTTTGACACTTTTGAGTAATTAGATCGTTTGTTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCACAGAAATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTATGAAGCGCTTCATCACAACAATTTTCAGTACGAGTCTTCTCAAAAACAAGCCGCATACCCATATTAGCAATTACCTTATATTCAATGCTTTCATTTTCCCCAAACGCCGCCGGAAACCAATTTCGTTTTTGGGCTCACTCGTACACACACACAAACACCAGAAGGTGGTAC</canonical>
            <polymorphic>CGCGATTGCAATACACACCAGTGTGTCAGGAACATTTGAGCGTTTTTCGCAGTAGTAGTTCTGTCTGAGAGACCGCCAGTTCTTCATCGCCATGGCTTTTTTTCGGGCTTCTTCTTCTTTATGACCAGGATCCAACCATGTTTTTTTCTAACTACAAGAAGTCTCCAGAAAAGACAATTTCAAAAGAAATTGACCTTTAATCAGATTCGCGGGATATCGAAAAAAGAAAAAATAACCATGGTTTGAATTTTAATGATAAATGCAAGTTTTCGAGGTTTTCAAATTCGTTTTTCAAAGAATTTATAATTGTAAAGTTTTCTTTTAAAAACTAATTTTTATCTACAGCAATATGAGAGCTTCCTGCACAAATTGACTTTACTTCCTCATTTTTCTGATTATCTGAGGATAGAATGTGATTTGATTTTGAACCGACGTGACAAGTTTTTCTGTTATTGTGTACTCTCTCAAAATTTAGTTTTGACACTTTTGAGTAATTAGAKCGTTTGTTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCACAGAAATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTATGAAGCGCTTCATCACAACAATTTTCAGTACGAGTCTTCTCAAAAACAAGCCGCATACCCATATTAGCAATTACCTTATATTCAATGCTTTCATTTTCCCCAAACGCCGCCGGAAACCAATTTCGTTTTTGGGCTCACTCGTACACACACACAAACACCAGAAGGTGGTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>503 369 128</canonical_bands>
                <polymorphic_bands>872 128</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGCACAAATTGACTTTACTTC</pcr_primer_p1>
		<pcr_primer_p2>GTTTTGTCGAAAGTGAGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CTGCACAAATTGACTTTACTTCCTCATTTTTCTGATTATCTGAGGATAGAATGTGATTTGATTTTGAACCGACGTGACAAGTTTTTCTGTTATTGTGTACTCTCTCAAAATTTAGTTTTGACACTTTTGAGTAATTAGATCGTTTGTTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCACAGAAATTTTCTCACTTTCGACAAAAC</canonical_amplicon>
		<polymorphic_amplicon>CTGCACAAATTGACTTTACTTCCTCATTTTTCTGATTATCTGAGGATAGAATGTGATTTGATTTTGAACCGACGTGACAAGTTTTTCTGTTATTGTGTACTCTCTCAAAATTTAGTTTTGACACTTTTGAGTAATTAGAKCGTTTGTTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCACAGAAATTTTCTCACTTTCGACAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24415</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>805050</contig_pos>
        <strand>+</strand>
        <context>ATGAAGTTTT[A/C]ACACTTCCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTT</left_flank>
        <right_flank>ACACTTCCTCACAGAAATTTTCTCACTTTCGACAAAACTCTTTTTCGAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTTCTTCATCGCCATGGCTTTTTTTCGGGCTTCTTCTTCTTTATGACCAGGATCCAACCATGTTTTTTTCTAACTACAAGAAGTCTCCAGAAAAGACAATTTCAAAAGAAATTGACCTTTAATCAGATTCGCGGGATATCGAAAAAAGAAAAAATAACCATGGTTTGAATTTTAATGATAAATGCAAGTTTTCGAGGTTTTCAAATTCGTTTTTCAAAGAATTTATAATTGTAAAGTTTTCTTTTAAAAACTAATTTTTATCTACAGCAATATGAGAGCTTCCTGCACAAATTGACTTTACTTCCTCATTTTTCTGATTATCTGAGGATAGAATGTGATTTGATTTTGAACCGACGTGACAAGTTTTTCTGTTATTGTGTACTCTCTCAAAATTTAGTTTTGACACTTTTGAGTAATTAGATCGTTTGTTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCACAGAAATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTATGAAGCGCTTCATCACAACAATTTTCAGTACGAGTCTTCTCAAAAACAAGCCGCATACCCATATTAGCAATTACCTTATATTCAATGCTTTCATTTTCCCCAAACGCCGCCGGAAACCAATTTCGTTTTTGGGCTCACTCGTACACACACACAAACACCAGAAGGTGGTACCAAAGGTACCCCTCATTTCAGGTAACTGCTAATTAAAAATTGCTCTAGTTCTCTGCTCTCTGATGCCCCTTGATAT</canonical>
            <polymorphic>CAGTTCTTCATCGCCATGGCTTTTTTTCGGGCTTCTTCTTCTTTATGACCAGGATCCAACCATGTTTTTTTCTAACTACAAGAAGTCTCCAGAAAAGACAATTTCAAAAGAAATTGACCTTTAATCAGATTCGCGGGATATCGAAAAAAGAAAAAATAACCATGGTTTGAATTTTAATGATAAATGCAAGTTTTCGAGGTTTTCAAATTCGTTTTTCAAAGAATTTATAATTGTAAAGTTTTCTTTTAAAAACTAATTTTTATCTACAGCAATATGAGAGCTTCCTGCACAAATTGACTTTACTTCCTCATTTTTCTGATTATCTGAGGATAGAATGTGATTTGATTTTGAACCGACGTGACAAGTTTTTCTGTTATTGTGTACTCTCTCAAAATTTAGTTTTGACACTTTTGAGTAATTAGATCGTTTGTTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTMACACTTCCTCACAGAAATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTATGAAGCGCTTCATCACAACAATTTTCAGTACGAGTCTTCTCAAAAACAAGCCGCATACCCATATTAGCAATTACCTTATATTCAATGCTTTCATTTTCCCCAAACGCCGCCGGAAACCAATTTCGTTTTTGGGCTCACTCGTACACACACACAAACACCAGAAGGTGGTACCAAAGGTACCCCTCATTTCAGGTAACTGCTAATTAAAAATTGCTCTAGTTCTCTGCTCTCTGATGCCCCTTGATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>289 186 122 80 50 46 30 27 26 26 22 21 21 14 10 8 8 6 2 2 2 2</canonical_bands>
                <polymorphic_bands>289 186 122 80 50 46 30 27 26 26 24 21 21 14 10 8 8 6 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGAATCAATAAAAACTCTTCAC</pcr_primer_p1>
		<pcr_primer_p2>TGTTGAGTTAGTCAGAAGTGTCA</pcr_primer_p2>
		<pcr_amplicon_size>299</pcr_amplicon_size>
		<canonical_amplicon>TTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCACAGAAATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACA</canonical_amplicon>
		<polymorphic_amplicon>TTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTMACACTTCCTCACAGAAATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24416</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>805062</contig_pos>
        <strand>+</strand>
        <context>CACTTCCTCA[A/C]AGWAATTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCA</left_flank>
        <right_flank>AGAAATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAA</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCATGGCTTTTTTTCGGGCTTCTTCTTCTTTATGACCAGGATCCAACCATGTTTTTTTCTAACTACAAGAAGTCTCCAGAAAAGACAATTTCAAAAGAAATTGACCTTTAATCAGATTCGCGGGATATCGAAAAAAGAAAAAATAACCATGGTTTGAATTTTAATGATAAATGCAAGTTTTCGAGGTTTTCAAATTCGTTTTTCAAAGAATTTATAATTGTAAAGTTTTCTTTTAAAAACTAATTTTTATCTACAGCAATATGAGAGCTTCCTGCACAAATTGACTTTACTTCCTCATTTTTCTGATTATCTGAGGATAGAATGTGATTTGATTTTGAACCGACGTGACAAGTTTTTCTGTTATTGTGTACTCTCTCAAAATTTAGTTTTGACACTTTTGAGTAATTAGATCGTTTGTTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCACAGAAATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTATGAAGCGCTTCATCACAACAATTTTCAGTACGAGTCTTCTCAAAAACAAGCCGCATACCCATATTAGCAATTACCTTATATTCAATGCTTTCATTTTCCCCAAACGCCGCCGGAAACCAATTTCGTTTTTGGGCTCACTCGTACACACACACAAACACCAGAAGGTGGTACCAAAGGTACCCCTCATTTCAGGTAACTGCTAATTAAAAATTGCTCTAGTTCTCTGCTCTCTGATGCCCCTTGATATATCTGCTGAATT</canonical>
            <polymorphic>GCCATGGCTTTTTTTCGGGCTTCTTCTTCTTTATGACCAGGATCCAACCATGTTTTTTTCTAACTACAAGAAGTCTCCAGAAAAGACAATTTCAAAAGAAATTGACCTTTAATCAGATTCGCGGGATATCGAAAAAAGAAAAAATAACCATGGTTTGAATTTTAATGATAAATGCAAGTTTTCGAGGTTTTCAAATTCGTTTTTCAAAGAATTTATAATTGTAAAGTTTTCTTTTAAAAACTAATTTTTATCTACAGCAATATGAGAGCTTCCTGCACAAATTGACTTTACTTCCTCATTTTTCTGATTATCTGAGGATAGAATGTGATTTGATTTTGAACCGACGTGACAAGTTTTTCTGTTATTGTGTACTCTCTCAAAATTTAGTTTTGACACTTTTGAGTAATTAGATCGTTTGTTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCAMAGAAATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTATGAAGCGCTTCATCACAACAATTTTCAGTACGAGTCTTCTCAAAAACAAGCCGCATACCCATATTAGCAATTACCTTATATTCAATGCTTTCATTTTCCCCAAACGCCGCCGGAAACCAATTTCGTTTTTGGGCTCACTCGTACACACACACAAACACCAGAAGGTGGTACCAAAGGTACCCCTCATTTCAGGTAACTGCTAATTAAAAATTGCTCTAGTTCTCTGCTCTCTGATGCCCCTTGATATATCTGCTGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>277 186 122 92 50 46 30 27 26 26 22 21 21 14 10 8 8 6 2 2 2 2</canonical_bands>
                <polymorphic_bands>277 186 122 92 50 46 30 27 26 26 22 22 21 21 10 8 6 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGAATCAATAAAAACTCTTCAC</pcr_primer_p1>
		<pcr_primer_p2>TGTTGAGTTAGTCAGAAGTGTCA</pcr_primer_p2>
		<pcr_amplicon_size>299</pcr_amplicon_size>
		<canonical_amplicon>TTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCACAGAAATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACA</canonical_amplicon>
		<polymorphic_amplicon>TTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCAMAGAAATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24417</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>805065</contig_pos>
        <strand>+</strand>
        <context>TTCCTCAMAG[A/T]AATTTTCTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATGTTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCACAG</left_flank>
        <right_flank>AATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATAT</right_flank>
        <qual_score>134</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGCTTTTTTTCGGGCTTCTTCTTCTTTATGACCAGGATCCAACCATGTTTTTTTCTAACTACAAGAAGTCTCCAGAAAAGACAATTTCAAAAGAAATTGACCTTTAATCAGATTCGCGGGATATCGAAAAAAGAAAAAATAACCATGGTTTGAATTTTAATGATAAATGCAAGTTTTCGAGGTTTTCAAATTCGTTTTTCAAAGAATTTATAATTGTAAAGTTTTCTTTTAAAAACTAATTTTTATCTACAGCAATATGAGAGCTTCCTGCACAAATTGACTTTACTTCCTCATTTTTCTGATTATCTGAGGATAGAATGTGATTTGATTTTGAACCGACGTGACAAGTTTTTCTGTTATTGTGTACTCTCTCAAAATTTAGTTTTGACACTTTTGAGTAATTAGATCGTTTGTTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCACAGAAATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTATGAAGCGCTTCATCACAACAATTTTCAGTACGAGTCTTCTCAAAAACAAGCCGCATACCCATATTAGCAATTACCTTATATTCAATGCTTTCATTTTCCCCAAACGCCGCCGGAAACCAATTTCGTTTTTGGGCTCACTCGTACACACACACAAACACCAGAAGGTGGTACCAAAGGTACCCCTCATTTCAGGTAACTGCTAATTAAAAATTGCTCTAGTTCTCTGCTCTCTGATGCCCCTTGATATATCTGCTGAATTCTC</canonical>
            <polymorphic>ATGGCTTTTTTTCGGGCTTCTTCTTCTTTATGACCAGGATCCAACCATGTTTTTTTCTAACTACAAGAAGTCTCCAGAAAAGACAATTTCAAAAGAAATTGACCTTTAATCAGATTCGCGGGATATCGAAAAAAGAAAAAATAACCATGGTTTGAATTTTAATGATAAATGCAAGTTTTCGAGGTTTTCAAATTCGTTTTTCAAAGAATTTATAATTGTAAAGTTTTCTTTTAAAAACTAATTTTTATCTACAGCAATATGAGAGCTTCCTGCACAAATTGACTTTACTTCCTCATTTTTCTGATTATCTGAGGATAGAATGTGATTTGATTTTGAACCGACGTGACAAGTTTTTCTGTTATTGTGTACTCTCTCAAAATTTAGTTTTGACACTTTTGAGTAATTAGATCGTTTGTTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCACAGWAATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTATGAAGCGCTTCATCACAACAATTTTCAGTACGAGTCTTCTCAAAAACAAGCCGCATACCCATATTAGCAATTACCTTATATTCAATGCTTTCATTTTCCCCAAACGCCGCCGGAAACCAATTTCGTTTTTGGGCTCACTCGTACACACACACAAACACCAGAAGGTGGTACCAAAGGTACCCCTCATTTCAGGTAACTGCTAATTAAAAATTGCTCTAGTTCTCTGCTCTCTGATGCCCCTTGATATATCTGCTGAATTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>331 171 154 123 70 57 36 19 16 16 7</canonical_bands>
                <polymorphic_bands>331 193 171 154 57 36 19 16 16 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGAATCAATAAAAACTCTTCAC</pcr_primer_p1>
		<pcr_primer_p2>TGTTGAGTTAGTCAGAAGTGTCA</pcr_primer_p2>
		<pcr_amplicon_size>299</pcr_amplicon_size>
		<canonical_amplicon>TTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCACAGAAATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACA</canonical_amplicon>
		<polymorphic_amplicon>TTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCACAGWAATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24418</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>805090</contig_pos>
        <strand>+</strand>
        <context>CGACAAAACT[A/C]TTtttcgaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGAAGTTTTCACACTTCCTCACAGAAATTTTCTCACTTTCGACAAAACT</left_flank>
        <right_flank>TTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTC</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTATGACCAGGATCCAACCATGTTTTTTTCTAACTACAAGAAGTCTCCAGAAAAGACAATTTCAAAAGAAATTGACCTTTAATCAGATTCGCGGGATATCGAAAAAAGAAAAAATAACCATGGTTTGAATTTTAATGATAAATGCAAGTTTTCGAGGTTTTCAAATTCGTTTTTCAAAGAATTTATAATTGTAAAGTTTTCTTTTAAAAACTAATTTTTATCTACAGCAATATGAGAGCTTCCTGCACAAATTGACTTTACTTCCTCATTTTTCTGATTATCTGAGGATAGAATGTGATTTGATTTTGAACCGACGTGACAAGTTTTTCTGTTATTGTGTACTCTCTCAAAATTTAGTTTTGACACTTTTGAGTAATTAGATCGTTTGTTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCACAGAAATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTATGAAGCGCTTCATCACAACAATTTTCAGTACGAGTCTTCTCAAAAACAAGCCGCATACCCATATTAGCAATTACCTTATATTCAATGCTTTCATTTTCCCCAAACGCCGCCGGAAACCAATTTCGTTTTTGGGCTCACTCGTACACACACACAAACACCAGAAGGTGGTACCAAAGGTACCCCTCATTTCAGGTAACTGCTAATTAAAAATTGCTCTAGTTCTCTGCTCTCTGATGCCCCTTGATATATCTGCTGAATTCTCATTCCCGGAGGTTTTCTTCAAAATC</canonical>
            <polymorphic>CTTTATGACCAGGATCCAACCATGTTTTTTTCTAACTACAAGAAGTCTCCAGAAAAGACAATTTCAAAAGAAATTGACCTTTAATCAGATTCGCGGGATATCGAAAAAAGAAAAAATAACCATGGTTTGAATTTTAATGATAAATGCAAGTTTTCGAGGTTTTCAAATTCGTTTTTCAAAGAATTTATAATTGTAAAGTTTTCTTTTAAAAACTAATTTTTATCTACAGCAATATGAGAGCTTCCTGCACAAATTGACTTTACTTCCTCATTTTTCTGATTATCTGAGGATAGAATGTGATTTGATTTTGAACCGACGTGACAAGTTTTTCTGTTATTGTGTACTCTCTCAAAATTTAGTTTTGACACTTTTGAGTAATTAGATCGTTTGTTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCACAGAAATTTTCTCACTTTCGACAAAACTMTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTATGAAGCGCTTCATCACAACAATTTTCAGTACGAGTCTTCTCAAAAACAAGCCGCATACCCATATTAGCAATTACCTTATATTCAATGCTTTCATTTTCCCCAAACGCCGCCGGAAACCAATTTCGTTTTTGGGCTCACTCGTACACACACACAAACACCAGAAGGTGGTACCAAAGGTACCCCTCATTTCAGGTAACTGCTAATTAAAAATTGCTCTAGTTCTCTGCTCTCTGATGCCCCTTGATATATCTGCTGAATTCTCATTCCCGGAGGTTTTCTTCAAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTTAGACACATATTTTGTATGAAG</pcr_primer_p1>
		<pcr_primer_p2>TGTTGAGTTAGTCAGAAGTGTCA</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>TTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCACAGAAATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACA</canonical_amplicon>
		<polymorphic_amplicon>TTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCACAGAAATTTTCTCACTTTCGACAAAACTMTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24419</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>805209</contig_pos>
        <strand></strand>
        <context>tgaaactcga[A/T]wttttcgaca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGA</left_flank>
        <right_flank>ATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCATGGTTTGAATTTTAATGATAAATGCAAGTTTTCGAGGTTTTCAAATTCGTTTTTCAAAGAATTTATAATTGTAAAGTTTTCTTTTAAAAACTAATTTTTATCTACAGCAATATGAGAGCTTCCTGCACAAATTGACTTTACTTCCTCATTTTTCTGATTATCTGAGGATAGAATGTGATTTGATTTTGAACCGACGTGACAAGTTTTTCTGTTATTGTGTACTCTCTCAAAATTTAGTTTTGACACTTTTGAGTAATTAGATCGTTTGTTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCACAGAAATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTATGAAGCGCTTCATCACAACAATTTTCAGTACGAGTCTTCTCAAAAACAAGCCGCATACCCATATTAGCAATTACCTTATATTCAATGCTTTCATTTTCCCCAAACGCCGCCGGAAACCAATTTCGTTTTTGGGCTCACTCGTACACACACACAAACACCAGAAGGTGGTACCAAAGGTACCCCTCATTTCAGGTAACTGCTAATTAAAAATTGCTCTAGTTCTCTGCTCTCTGATGCCCCTTGATATATCTGCTGAATTCTCATTCCCGGAGGTTTTCTTCAAAATCAATCATTGTGGTCTAGAAATTTCGATTTCCCTAAACCAACCCGCTCCGTTATATCTTTCTGATGGACATTTAAAAAACACATTTTTTCACTGCCTTTATTTTTTTTTTCATCAAACTCA</canonical>
            <polymorphic>CCATGGTTTGAATTTTAATGATAAATGCAAGTTTTCGAGGTTTTCAAATTCGTTTTTCAAAGAATTTATAATTGTAAAGTTTTCTTTTAAAAACTAATTTTTATCTACAGCAATATGAGAGCTTCCTGCACAAATTGACTTTACTTCCTCATTTTTCTGATTATCTGAGGATAGAATGTGATTTGATTTTGAACCGACGTGACAAGTTTTTCTGTTATTGTGTACTCTCTCAAAATTTAGTTTTGACACTTTTGAGTAATTAGATCGTTTGTTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCACAGAAATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAWATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTATGAAGCGCTTCATCACAACAATTTTCAGTACGAGTCTTCTCAAAAACAAGCCGCATACCCATATTAGCAATTACCTTATATTCAATGCTTTCATTTTCCCCAAACGCCGCCGGAAACCAATTTCGTTTTTGGGCTCACTCGTACACACACACAAACACCAGAAGGTGGTACCAAAGGTACCCCTCATTTCAGGTAACTGCTAATTAAAAATTGCTCTAGTTCTCTGCTCTCTGATGCCCCTTGATATATCTGCTGAATTCTCATTCCCGGAGGTTTTCTTCAAAATCAATCATTGTGGTCTAGAAATTTCGATTTCCCTAAACCAACCCGCTCCGTTATATCTTTCTGATGGACATTTAAAAAACACATTTTTTCACTGCCTTTATTTTTTTTTTCATCAAACTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>331 171 123 102 70 57 49 36 19 16 16 10</canonical_bands>
                <polymorphic_bands>331 171 123 102 76 70 49 36 16 16 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>102 101 99 95 83 57 50 49 49 47 37 37 36 33 26 24 19 16 10 10 7 7 6</canonical_bands>
                <polymorphic_bands>102 101 99 95 83 76 50 49 49 47 37 37 36 33 26 24 16 10 10 7 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCTCACTTTCGACAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GCTTCATACAGAAATATGTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTATGAAGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAWATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTATGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24420</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>805210</contig_pos>
        <strand></strand>
        <context>gaaactcgaw[A/T]ttttcgacat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAA</left_flank>
        <right_flank>TTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGAC</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGGTTTGAATTTTAATGATAAATGCAAGTTTTCGAGGTTTTCAAATTCGTTTTTCAAAGAATTTATAATTGTAAAGTTTTCTTTTAAAAACTAATTTTTATCTACAGCAATATGAGAGCTTCCTGCACAAATTGACTTTACTTCCTCATTTTTCTGATTATCTGAGGATAGAATGTGATTTGATTTTGAACCGACGTGACAAGTTTTTCTGTTATTGTGTACTCTCTCAAAATTTAGTTTTGACACTTTTGAGTAATTAGATCGTTTGTTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCACAGAAATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTATGAAGCGCTTCATCACAACAATTTTCAGTACGAGTCTTCTCAAAAACAAGCCGCATACCCATATTAGCAATTACCTTATATTCAATGCTTTCATTTTCCCCAAACGCCGCCGGAAACCAATTTCGTTTTTGGGCTCACTCGTACACACACACAAACACCAGAAGGTGGTACCAAAGGTACCCCTCATTTCAGGTAACTGCTAATTAAAAATTGCTCTAGTTCTCTGCTCTCTGATGCCCCTTGATATATCTGCTGAATTCTCATTCCCGGAGGTTTTCTTCAAAATCAATCATTGTGGTCTAGAAATTTCGATTTCCCTAAACCAACCCGCTCCGTTATATCTTTCTGATGGACATTTAAAAAACACATTTTTTCACTGCCTTTATTTTTTTTTTCATCAAACTCAC</canonical>
            <polymorphic>CATGGTTTGAATTTTAATGATAAATGCAAGTTTTCGAGGTTTTCAAATTCGTTTTTCAAAGAATTTATAATTGTAAAGTTTTCTTTTAAAAACTAATTTTTATCTACAGCAATATGAGAGCTTCCTGCACAAATTGACTTTACTTCCTCATTTTTCTGATTATCTGAGGATAGAATGTGATTTGATTTTGAACCGACGTGACAAGTTTTTCTGTTATTGTGTACTCTCTCAAAATTTAGTTTTGACACTTTTGAGTAATTAGATCGTTTGTTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCACAGAAATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAWTTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTATGAAGCGCTTCATCACAACAATTTTCAGTACGAGTCTTCTCAAAAACAAGCCGCATACCCATATTAGCAATTACCTTATATTCAATGCTTTCATTTTCCCCAAACGCCGCCGGAAACCAATTTCGTTTTTGGGCTCACTCGTACACACACACAAACACCAGAAGGTGGTACCAAAGGTACCCCTCATTTCAGGTAACTGCTAATTAAAAATTGCTCTAGTTCTCTGCTCTCTGATGCCCCTTGATATATCTGCTGAATTCTCATTCCCGGAGGTTTTCTTCAAAATCAATCATTGTGGTCTAGAAATTTCGATTTCCCTAAACCAACCCGCTCCGTTATATCTTTCTGATGGACATTTAAAAAACACATTTTTTCACTGCCTTTATTTTTTTTTTCATCAAACTCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>331 171 123 103 70 57 49 36 19 16 16 9</canonical_bands>
                <polymorphic_bands>331 171 123 103 76 70 49 36 16 16 9</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>103 101 99 95 83 57 50 49 49 47 37 37 36 33 26 24 19 16 10 9 7 7 6</canonical_bands>
                <polymorphic_bands>103 101 99 95 83 76 50 49 49 47 37 37 36 33 26 24 16 10 9 7 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCTCACTTTCGACAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GCTTCATACAGAAATATGTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTATGAAGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAWTTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTATGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24421</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>805252</contig_pos>
        <strand>+</strand>
        <context>catttcaaaA[A/T]WCCCTGACAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAA</left_flank>
        <right_flank>ACCCTGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGT</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAATTCGTTTTTCAAAGAATTTATAATTGTAAAGTTTTCTTTTAAAAACTAATTTTTATCTACAGCAATATGAGAGCTTCCTGCACAAATTGACTTTACTTCCTCATTTTTCTGATTATCTGAGGATAGAATGTGATTTGATTTTGAACCGACGTGACAAGTTTTTCTGTTATTGTGTACTCTCTCAAAATTTAGTTTTGACACTTTTGAGTAATTAGATCGTTTGTTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCACAGAAATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTATGAAGCGCTTCATCACAACAATTTTCAGTACGAGTCTTCTCAAAAACAAGCCGCATACCCATATTAGCAATTACCTTATATTCAATGCTTTCATTTTCCCCAAACGCCGCCGGAAACCAATTTCGTTTTTGGGCTCACTCGTACACACACACAAACACCAGAAGGTGGTACCAAAGGTACCCCTCATTTCAGGTAACTGCTAATTAAAAATTGCTCTAGTTCTCTGCTCTCTGATGCCCCTTGATATATCTGCTGAATTCTCATTCCCGGAGGTTTTCTTCAAAATCAATCATTGTGGTCTAGAAATTTCGATTTCCCTAAACCAACCCGCTCCGTTATATCTTTCTGATGGACATTTAAAAAACACATTTTTTCACTGCCTTTATTTTTTTTTTCATCAAACTCACAAAACCTTAGATTAGCCGACAGATTGTAGACACGCAGAATGC</canonical>
            <polymorphic>TCAAATTCGTTTTTCAAAGAATTTATAATTGTAAAGTTTTCTTTTAAAAACTAATTTTTATCTACAGCAATATGAGAGCTTCCTGCACAAATTGACTTTACTTCCTCATTTTTCTGATTATCTGAGGATAGAATGTGATTTGATTTTGAACCGACGTGACAAGTTTTTCTGTTATTGTGTACTCTCTCAAAATTTAGTTTTGACACTTTTGAGTAATTAGATCGTTTGTTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCACAGAAATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAAWACCCTGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTATGAAGCGCTTCATCACAACAATTTTCAGTACGAGTCTTCTCAAAAACAAGCCGCATACCCATATTAGCAATTACCTTATATTCAATGCTTTCATTTTCCCCAAACGCCGCCGGAAACCAATTTCGTTTTTGGGCTCACTCGTACACACACACAAACACCAGAAGGTGGTACCAAAGGTACCCCTCATTTCAGGTAACTGCTAATTAAAAATTGCTCTAGTTCTCTGCTCTCTGATGCCCCTTGATATATCTGCTGAATTCTCATTCCCGGAGGTTTTCTTCAAAATCAATCATTGTGGTCTAGAAATTTCGATTTCCCTAAACCAACCCGCTCCGTTATATCTTTCTGATGGACATTTAAAAAACACATTTTTTCACTGCCTTTATTTTTTTTTTCATCAAACTCACAAAACCTTAGATTAGCCGACAGATTGTAGACACGCAGAATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCTCACTTTCGACAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GCTTCATACAGAAATATGTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTATGAAGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAAWACCCTGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTATGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24422</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>805253</contig_pos>
        <strand>+</strand>
        <context>atttcaaaAW[A/T]CCCTGACACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAAT</left_flank>
        <right_flank>CCCTGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTA</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATTCGTTTTTCAAAGAATTTATAATTGTAAAGTTTTCTTTTAAAAACTAATTTTTATCTACAGCAATATGAGAGCTTCCTGCACAAATTGACTTTACTTCCTCATTTTTCTGATTATCTGAGGATAGAATGTGATTTGATTTTGAACCGACGTGACAAGTTTTTCTGTTATTGTGTACTCTCTCAAAATTTAGTTTTGACACTTTTGAGTAATTAGATCGTTTGTTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCACAGAAATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTATGAAGCGCTTCATCACAACAATTTTCAGTACGAGTCTTCTCAAAAACAAGCCGCATACCCATATTAGCAATTACCTTATATTCAATGCTTTCATTTTCCCCAAACGCCGCCGGAAACCAATTTCGTTTTTGGGCTCACTCGTACACACACACAAACACCAGAAGGTGGTACCAAAGGTACCCCTCATTTCAGGTAACTGCTAATTAAAAATTGCTCTAGTTCTCTGCTCTCTGATGCCCCTTGATATATCTGCTGAATTCTCATTCCCGGAGGTTTTCTTCAAAATCAATCATTGTGGTCTAGAAATTTCGATTTCCCTAAACCAACCCGCTCCGTTATATCTTTCTGATGGACATTTAAAAAACACATTTTTTCACTGCCTTTATTTTTTTTTTCATCAAACTCACAAAACCTTAGATTAGCCGACAGATTGTAGACACGCAGAATGCA</canonical>
            <polymorphic>CAAATTCGTTTTTCAAAGAATTTATAATTGTAAAGTTTTCTTTTAAAAACTAATTTTTATCTACAGCAATATGAGAGCTTCCTGCACAAATTGACTTTACTTCCTCATTTTTCTGATTATCTGAGGATAGAATGTGATTTGATTTTGAACCGACGTGACAAGTTTTTCTGTTATTGTGTACTCTCTCAAAATTTAGTTTTGACACTTTTGAGTAATTAGATCGTTTGTTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCACAGAAATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATWCCCTGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTATGAAGCGCTTCATCACAACAATTTTCAGTACGAGTCTTCTCAAAAACAAGCCGCATACCCATATTAGCAATTACCTTATATTCAATGCTTTCATTTTCCCCAAACGCCGCCGGAAACCAATTTCGTTTTTGGGCTCACTCGTACACACACACAAACACCAGAAGGTGGTACCAAAGGTACCCCTCATTTCAGGTAACTGCTAATTAAAAATTGCTCTAGTTCTCTGCTCTCTGATGCCCCTTGATATATCTGCTGAATTCTCATTCCCGGAGGTTTTCTTCAAAATCAATCATTGTGGTCTAGAAATTTCGATTTCCCTAAACCAACCCGCTCCGTTATATCTTTCTGATGGACATTTAAAAAACACATTTTTTCACTGCCTTTATTTTTTTTTTCATCAAACTCACAAAACCTTAGATTAGCCGACAGATTGTAGACACGCAGAATGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCTCACTTTCGACAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GCTTCATACAGAAATATGTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTATGAAGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATWCCCTGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTATGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24423</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>805362</contig_pos>
        <strand>+</strand>
        <context>AGCCGCATAC[C/T]CATATTAGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCATCACAACAATTTTCAGTACGAGTCTTCTCAAAAACAAGCCGCATAC</left_flank>
        <right_flank>CATATTAGCAATTACCTTATATTCAATGCTTTCATTTTCCCCAAACGCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTGATTATCTGAGGATAGAATGTGATTTGATTTTGAACCGACGTGACAAGTTTTTCTGTTATTGTGTACTCTCTCAAAATTTAGTTTTGACACTTTTGAGTAATTAGATCGTTTGTTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCACAGAAATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTATGAAGCGCTTCATCACAACAATTTTCAGTACGAGTCTTCTCAAAAACAAGCCGCATACCCATATTAGCAATTACCTTATATTCAATGCTTTCATTTTCCCCAAACGCCGCCGGAAACCAATTTCGTTTTTGGGCTCACTCGTACACACACACAAACACCAGAAGGTGGTACCAAAGGTACCCCTCATTTCAGGTAACTGCTAATTAAAAATTGCTCTAGTTCTCTGCTCTCTGATGCCCCTTGATATATCTGCTGAATTCTCATTCCCGGAGGTTTTCTTCAAAATCAATCATTGTGGTCTAGAAATTTCGATTTCCCTAAACCAACCCGCTCCGTTATATCTTTCTGATGGACATTTAAAAAACACATTTTTTCACTGCCTTTATTTTTTTTTTCATCAAACTCACAAAACCTTAGATTAGCCGACAGATTGTAGACACGCAGAATGCAAATTTCCGGACCTCTTTCCGCTTTTATAAATGATTTTATGTATGTGTTTCTAATCATATTGGGGTGTGACAAAGACCTCTCTCGAACACATTCAACCGGTTGCTGCTTC</canonical>
            <polymorphic>TTTCTGATTATCTGAGGATAGAATGTGATTTGATTTTGAACCGACGTGACAAGTTTTTCTGTTATTGTGTACTCTCTCAAAATTTAGTTTTGACACTTTTGAGTAATTAGATCGTTTGTTTGAATCAATAAAAACTCTTCACTTCTGACTAAAAATGTTGTTAGACACATATTTTGTATGAAGTTTTCACACTTCCTCACAGAAATTTTCTCACTTTCGACAAAACTCTTTTTCGAAATTGCAACCGAAATATTTGCAAAGGTTCTATTCCGAAATTCTAATTATCCGAAATTTTTTGAAATAGTAATATTCTGAAGTTCCGAAATACCGATATTTTGAAACTCGAAATTTTCGACATTTCGTAAAATTTCCAAAATGCCATTTCAAAATACCCTGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTATGAAGCGCTTCATCACAACAATTTTCAGTACGAGTCTTCTCAAAAACAAGCCGCATACYCATATTAGCAATTACCTTATATTCAATGCTTTCATTTTCCCCAAACGCCGCCGGAAACCAATTTCGTTTTTGGGCTCACTCGTACACACACACAAACACCAGAAGGTGGTACCAAAGGTACCCCTCATTTCAGGTAACTGCTAATTAAAAATTGCTCTAGTTCTCTGCTCTCTGATGCCCCTTGATATATCTGCTGAATTCTCATTCCCGGAGGTTTTCTTCAAAATCAATCATTGTGGTCTAGAAATTTCGATTTCCCTAAACCAACCCGCTCCGTTATATCTTTCTGATGGACATTTAAAAAACACATTTTTTCACTGCCTTTATTTTTTTTTTCATCAAACTCACAAAACCTTAGATTAGCCGACAGATTGTAGACACGCAGAATGCAAATTTCCGGACCTCTTTCCGCTTTTATAAATGATTTTATGTATGTGTTTCTAATCATATTGGGGTGTGACAAAGACCTCTCTCGAACACATTCAACCGGTTGCTGCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACACTTCTGACTAACTCAACA</pcr_primer_p1>
		<pcr_primer_p2>AATTAGCAGTTACCTGAAATGAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTATGAAGCGCTTCATCACAACAATTTTCAGTACGAGTCTTCTCAAAAACAAGCCGCATACCCATATTAGCAATTACCTTATATTCAATGCTTTCATTTTCCCCAAACGCCGCCGGAAACCAATTTCGTTTTTGGGCTCACTCGTACACACACACAAACACCAGAAGGTGGTACCAAAGGTACCCCTCATTTCAGGTAACTGCTAATT</canonical_amplicon>
		<polymorphic_amplicon>TGACACTTCTGACTAACTCAACATGTTGCCGGACACATATTTCTGTATGAAGCGCTTCATCACAACAATTTTCAGTACGAGTCTTCTCAAAAACAAGCCGCATACYCATATTAGCAATTACCTTATATTCAATGCTTTCATTTTCCCCAAACGCCGCCGGAAACCAATTTCGTTTTTGGGCTCACTCGTACACACACACAAACACCAGAAGGTGGTACCAAAGGTACCCCTCATTTCAGGTAACTGCTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24424</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>868858</contig_pos>
        <strand>+</strand>
        <context>CCATCTCGAY[C/T]TGATCAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGTAGACATTATGACAACGATTCCGGGGTCAATGCTAACCATCTCGAT</left_flank>
        <right_flank>TGATCAAAAATGATGAAAATCTTACTTTAAAATATGTATTTTTCCTTCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACTGTGTGTGACGTGACGTCGGATGAACACTCCGGAAACCGGTGACGTGTGAGACAGTGGGCATGTATCCATTGCCATTCACCCAACTCTTCTTCTCCTTTTTGTTCTTCTTCGGCACTCGGGATGAGTAAAGAAGGCTTGAAGGAGAAGGAGAAGAAGAAAACTTTGATCTTACACGTCTTTTAATATACATTTTCTAGTACCTCACAAGTTCTCATCACTTTTCCTTTTTTTTTCTTCACTAGTACTACTATGAAAAATTCGGTCTAGTGTTTTTATTCGGAGAGACCATTTTGATCAGGAGGAAGTTCTGAATTTTCGAAAAGTTTCTTCGAGGATCGTGAGTTTATGCTACAACATTGCCCTAACTATCAAAAATATAAATGTTTCTGACCGATTTTTTTTTGATTATTGTAATAGGTATCAAAAATAGATAATTGATGAAATATTGTAGACATTATGACAACGATTCCGGGGTCAATGCTAACCATCTCGATCTGATCAAAAATGATGAAAATCTTACTTTAAAATATGTATTTTTCCTTCTCTTGTGCAATTTAGCCGTAACATCACTGTAATGTCGATAAGAATTGAAATATATATTTTTAGTAAATAAAAAATCCAAATTTCTTTAAAATTCAAATTGATTAGCCTCTTCCAAAATCTGCTTTCCAAAAATCAATTATCAAATTCAACTTTTCAAAATCTGAAAGTTTCTTCGGAATTCAATTTTTAAGAATACTGAATTTTTTTGTTAAACCTTCTTTTCCCAGAAAAACTATTTTGATCCGAAAATAGTTTTAGTTCGAAATAATCAGCTAGATCCATTTTATCTTTTTATCTCAACCCTCTTGACAATTTTCATGAAATTCTTCAAAACATTTCAGATGACTTTTCTGGAACTTTTCAATTACAATACATATTTTGTTCCTTTTGAAACAAATTTTCGAACTTTACTCAGTTTCCAGATAATGCATTTTCCATGTCATTCAATCTCA</canonical>
            <polymorphic>TTACTGTGTGTGACGTGACGTCGGATGAACACTCCGGAAACCGGTGACGTGTGAGACAGTGGGCATGTATCCATTGCCATTCACCCAACTCTTCTTCTCCTTTTTGTTCTTCTTCGGCACTCGGGATGAGTAAAGAAGGCTTGAAGGAGAAGGAGAAGAAGAAAACTTTGATCTTACACGTCTTTTAATATACATTTTCTAGTACCTCACAAGTTCTCATCACTTTTCCTTTTTTTTTCTTCACTAGTACTACTATGAAAAATTCGGTCTAGTGTTTTTATTCGGAGAGACCATTTTGATCAGGAGGAAGTTCTGAATTTTCGAAAAGTTTCTTCGAGGATCGTGAGTTTATGCTACAACATTGCCCTAACTATCAAAAATATAAATGTTTCTGACCGATTTTTTTTTGATTATTGTAATAGGTATCAAAAATAGATAATTGATGAAATATTGTAGACATTATGACAACGATTCCGGGGTCAATGCTAACCATCTCGATYTGATCAAAAATGATGAAAATCTTACTTTAAAATATGTATTTTTCCTTCTCTTGTGCAATTTAGCCGTAACATCACTGTAATGTCGATAAGAATTGAAATATATATTTTTAGTAAATAAAAAATCCAAATTTCTTTAAAATTCAAATTGATTAGCCTCTTCCAAAATCTGCTTTCCAAAAATCAATTATCAAATTCAACTTTTCAAAATCTGAAAGTTTCTTCGGAATTCAATTTTTAAGAATACTGAATTTTTTTGTTAAACCTTCTTTTCCCAGAAAAACTATTTTGATCCGAAAATAGTTTTAGTTCGAAATAATCAGCTAGATCCATTTTATCTTTTTATCTCAACCCTCTTGACAATTTTCATGAAATTCTTCAAAACATTTCAGATGACTTTTCTGGAACTTTTCAATTACAATACATATTTTGTTCCTTTTGAAACAAATTTTCGAACTTTACTCAGTTTCCAGATAATGCATTTTCCATGTCATTCAATCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>286 177 169 158 128 41 36 5</canonical_bands>
                <polymorphic_bands>286 177 169 163 128 41 36</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>261 209 112 108 96 79 69 30 23 13</canonical_bands>
                <polymorphic_bands>317 261 112 96 79 69 30 23 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGATCGTGAGTTTATGCTAC</pcr_primer_p1>
		<pcr_primer_p2>ATTACAGTGATGTTACGGCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAGGATCGTGAGTTTATGCTACAACATTGCCCTAACTATCAAAAATATAAATGTTTCTGACCGATTTTTTTTTGATTATTGTAATAGGTATCAAAAATAGATAATTGATGAAATATTGTAGACATTATGACAACGATTCCGGGGTCAATGCTAACCATCTCGATCTGATCAAAAATGATGAAAATCTTACTTTAAAATATGTATTTTTCCTTCTCTTGTGCAATTTAGCCGTAACATCACTGTAAT</canonical_amplicon>
		<polymorphic_amplicon>GAGGATCGTGAGTTTATGCTACAACATTGCCCTAACTATCAAAAATATAAATGTTTCTGACCGATTTTTTTTTGATTATTGTAATAGGTATCAAAAATAGATAATTGATGAAATATTGTAGACATTATGACAACGATTCCGGGGTCAATGCTAACCATCTCGATYTGATCAAAAATGATGAAAATCTTACTTTAAAATATGTATTTTTCCTTCTCTTGTGCAATTTAGCCGTAACATCACTGTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24425</snp_id>
        <super_contig>c000600682.Contig1</super_contig>
        <contig_pos>914309</contig_pos>
        <strand>+</strand>
        <context>CCAGTTCATT[G/T]TATGCTTAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGACATTTTTCCAGCCCTTTCCTCTGCTTCTCTAGAAATTCCAGTTCATT</left_flank>
        <right_flank>TATGCTTAGCTTTAATAAAACAACCCTACAATATCCACCACCAAAAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAGAATCAAGGAGATTTTCAAATTGGGACAGGGTGAGGAATTGGGGTACATTGGCAGTTATGGCATTCCAAAATGGGATGGTGCATGCAAAAAAATCATTGATATGGGGATTGAGCCAAATTAAAGTCATGGGGCGACGGGCAAAGTTAGATAAGCGGAAATGAGATTCAGGGTGGGGAATGTAAGAAGTAAGGTTAATTATTTTGTACAGAAGCATTAACTGAGAATTAAGGCGTCTATGACGCAAAGAGAAAAAATTGAGAATTTGGAGTCTGGAAGGATAAGAGGCACCGGGGGTAGACGAAAATGGTATATTACAACGTTGGCAAATAGTTTTGGAGAAGAAACGAAGGGGGGATTCAAGTTTTTTAGACAGTTTGGAATCGGGATTAGGGGAAAAACACAAAACATCAAAATGGGGTACTGTCCTTCTCTTTAACTTTTTGTTGACATTTTTCCAGCCCTTTCCTCTGCTTCTCTAGAAATTCCAGTTCATTGTATGCTTAGCTTTAATAAAACAACCCTACAATATCCACCACCAAAAAATTTCAATTTCCCCCATAACCCAACGCTTTCAAATTTCCTGTTTTTTTCTGATGAGGAAACCAACAACCCACTCTCAGGAGTGACATTGATGGATACATTCTACAGTGGTCCCACACCCTTTCCAATCTCCCCTATCCATTACTTTCATTCGACCAACTCGTAGAACACCGTAGTCCTAGCAATTTTTCAAAATTTCTCTCTTTTTTGTTTTCTCACTTGCTGGGGAGTGTCACTAACCATTCATCTTCTCTCGAGCTCACTGCTTTATCGACTCATCCACGACGACATGACCCTCATTCTCGTTTCTCAGAGATTTCCTTTTTCTTCATTCGTTTTTCTTATTCACTCTTTTTTCTTCTAGAAATGGAATCAATCGAATCGGTATTTTGCAAGTTGTTCTCTCAGGACGATCATGCACGTCTCAGTTCTTTCACCGCCCTTTTCTGGTTCAT</canonical>
            <polymorphic>AGAAGAATCAAGGAGATTTTCAAATTGGGACAGGGTGAGGAATTGGGGTACATTGGCAGTTATGGCATTCCAAAATGGGATGGTGCATGCAAAAAAATCATTGATATGGGGATTGAGCCAAATTAAAGTCATGGGGCGACGGGCAAAGTTAGATAAGCGGAAATGAGATTCAGGGTGGGGAATGTAAGAAGTAAGGTTAATTATTTTGTACAGAAGCATTAACTGAGAATTAAGGCGTCTATGACGCAAAGAGAAAAAATTGAGAATTTGGAGTCTGGAAGGATAAGAGGCACCGGGGGTAGACGAAAATGGTATATTACAACGTTGGCAAATAGTTTTGGAGAAGAAACGAAGGGGGGATTCAAGTTTTTTAGACAGTTTGGAATCGGGATTAGGGGAAAAACACAAAACATCAAAATGGGGTACTGTCCTTCTCTTTAACTTTTTGTTGACATTTTTCCAGCCCTTTCCTCTGCTTCTCTAGAAATTCCAGTTCATTKTATGCTTAGCTTTAATAAAACAACCCTACAATATCCACCACCAAAAAATTTCAATTTCCCCCATAACCCAACGCTTTCAAATTTCCTGTTTTTTTCTGATGAGGAAACCAACAACCCACTCTCAGGAGTGACATTGATGGATACATTCTACAGTGGTCCCACACCCTTTCCAATCTCCCCTATCCATTACTTTCATTCGACCAACTCGTAGAACACCGTAGTCCTAGCAATTTTTCAAAATTTCTCTCTTTTTTGTTTTCTCACTTGCTGGGGAGTGTCACTAACCATTCATCTTCTCTCGAGCTCACTGCTTTATCGACTCATCCACGACGACATGACCCTCATTCTCGTTTCTCAGAGATTTCCTTTTTCTTCATTCGTTTTTCTTATTCACTCTTTTTTCTTCTAGAAATGGAATCAATCGAATCGGTATTTTGCAAGTTGTTCTCTCAGGACGATCATGCACGTCTCAGTTCTTTCACCGCCCTTTTCTGGTTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGTACTGTCCTTCTCTTTAACT</pcr_primer_p1>
		<pcr_primer_p2>GTGGGACCACTGTAGAATGTAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GGGTACTGTCCTTCTCTTTAACTTTTTGTTGACATTTTTCCAGCCCTTTCCTCTGCTTCTCTAGAAATTCCAGTTCATTGTATGCTTAGCTTTAATAAAACAACCCTACAATATCCACCACCAAAAAATTTCAATTTCCCCCATAACCCAACGCTTTCAAATTTCCTGTTTTTTTCTGATGAGGAAACCAACAACCCACTCTCAGGAGTGACATTGATGGATACATTCTACAGTGGTCCCAC</canonical_amplicon>
		<polymorphic_amplicon>GGGTACTGTCCTTCTCTTTAACTTTTTGTTGACATTTTTCCAGCCCTTTCCTCTGCTTCTCTAGAAATTCCAGTTCATTKTATGCTTAGCTTTAATAAAACAACCCTACAATATCCACCACCAAAAAATTTCAATTTCCCCCATAACCCAACGCTTTCAAATTTCCTGTTTTTTTCTGATGAGGAAACCAACAACCCACTCTCAGGAGTGACATTGATGGATACATTCTACAGTGGTCCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24426</snp_id>
        <super_contig>c000700911.Contig1</super_contig>
        <contig_pos>58170</contig_pos>
        <strand></strand>
        <context>aagcgacgca[G/C]gaccgcgacg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>ACACGACCCAGATCCGTCCATTTTCAATTTTCTGCAAAACAAGCGACGCA</left_flank>
        <right_flank>GACCGCGACGCACCCGAAGTTTCAAAACCTACGCAACCTAGTCGTGTTTG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTTTTTTTTGAAAAATTTTGAAATTTTCAGAGTCAGACTTGTTTTTGGCTATAACTCGCTTCAAAATGATCCAGGTTTTTCAAAGCTTGAATTTTTGAATTTCTGAATTTATGAGCTTTAAAATGAGCCCAAACACGACCCAATTCCGTTAATTTCAATTTCTGCGCAAAACACGTGACGCACGACCGCGACGCACCCGAAAATTCAAAATTCACCGAATCCTGGCGTGTTTGGGCTCATTTTGAAGCTCGCAACTTGCCGAATTCAGATTTTTATTTAAAAAGTTAAGGATCAGAGCAATTAGGGCTTCAAAATAAGCTTCAACATGGCTGATTGTCAGAATTTCGTCGCTTTTAGGCTCATTTTGAAGCTCGCATCCCGAAAAAACCAGTTTTTTTCATAAAAATCATGAAATTAGCTTGTTTTAAGCTTTAAAATGAGCTCAAACACGACCCAGATCCGTCCATTTTCAATTTTCTGCAAAACAAGCGACGCAGGACCGCGACGCACCCGAAGTTTCAAAACCTACGCAACCTAGTCGTGTTTGGGCTCATTTTGAAGCTGGTAACTTGCCAAACTAGGATTTTGAGACGAAAATGTAAGATCAGCACATTTTGAGCTACAAAATGAGCCCAAAACATGACTATTTATTGAAAAAAATGTTCCTCCAAAAAATGTTTTTTTTTCAATTTCAATCGTGTTTGGGCTCATTTTGAAGGAAATAAGCTGAAAATTTTGATTTTTGTGTTTTCAGTCACTTTTTGGACGGTTTGAATGCATTTATGTGCTGTCAAAGTTGAAAAATTGAAACATTGTTGAAACATTGGTTTTCTGGAACCTTCTAGAAAATTCTAGAAAATTCCAAAAAATTCCCACAAAAGTCTGAAGAACTTGAGAGAAAAGTGGGAGAAGCACTCTCTAATGCTAATCCTCCTTTCTTTCAAAAAATTCAAAAAAATTTCCAGAATCTTCTGTCCCAAAAGTCCCGAAATGTCCC</canonical>
            <polymorphic>GATTTTTTTTTTGAAAAATTTTGAAATTTTCAGAGTCAGACTTGTTTTTGGCTATAACTCGCTTCAAAATGATCCAGGTTTTTCAAAGCTTGAATTTTTGAATTTCTGAATTTATGAGCTTTAAAATGAGCCCAAACACGACCCAATTCCGTTAATTTCAATTTCTGCGCAAAACACGTGACGCACGACCGCGACGCACCCGAAAATTCAAAATTCACCGAATCCTGGCGTGTTTGGGCTCATTTTGAAGCTCGCAACTTGCCGAATTCAGATTTTTATTTAAAAAGTTAAGGATCAGAGCAATTAGGGCTTCAAAATAAGCTTCAACATGGCTGATTGTCAGAATTTCGTCGCTTTTAGGCTCATTTTGAAGCTCGCATCCCGAAAAAACCAGTTTTTTTCATAAAAATCATGAAATTAGCTTGTTTTAAGCTTTAAAATGAGCTCAAACACGACCCAGATCCGTCCATTTTCAATTTTCTGCAAAACAAGCGACGCASGACCGCGACGCACCCGAAGTTTCAAAACCTACGCAACCTAGTCGTGTTTGGGCTCATTTTGAAGCTGGTAACTTGCCAAACTAGGATTTTGAGACGAAAATGTAAGATCAGCACATTTTGAGCTACAAAATGAGCCCAAAACATGACTATTTATTGAAAAAAATGTTCCTCCAAAAAATGTTTTTTTTTCAATTTCAATCGTGTTTGGGCTCATTTTGAAGGAAATAAGCTGAAAATTTTGATTTTTGTGTTTTCAGTCACTTTTTGGACGGTTTGAATGCATTTATGTGCTGTCAAAGTTGAAAAATTGAAACATTGTTGAAACATTGGTTTTCTGGAACCTTCTAGAAAATTCTAGAAAATTCCAAAAAATTCCCACAAAAGTCTGAAGAACTTGAGAGAAAAGTGGGAGAAGCACTCTCTAATGCTAATCCTCCTTTCTTTCAAAAAATTCAAAAAAATTTCCAGAATCTTCTGTCCCAAAAGTCCCGAAATGTCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATTTTCAGGATATTTATGAAG</pcr_primer_p1>
		<pcr_primer_p2>CTGATCTTACATTTTCGTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>705</pcr_amplicon_size>
		<canonical_amplicon>AGGACCGCGACGCACCCGAAGTTTCAAAACCTACGCAACCTAGTCGTGTTTGGGCTCATTTTGAAGCTGGTAACTTGCCAAACTAGGATTTTGAGACGAAAATGTAAGATCAG</canonical_amplicon>
		<polymorphic_amplicon>ASGACCGCGACGCACCCGAAGTTTCAAAACCTACGCAACCTAGTCGTGTTTGGGCTCATTTTGAAGCTGGTAACTTGCCAAACTAGGATTTTGAGACGAAAATGTAAGATCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24427</snp_id>
        <super_contig>c000700911.Contig1</super_contig>
        <contig_pos>58579</contig_pos>
        <strand></strand>
        <context>GAGAAAAGTG[G/C]GAGAAGCACT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AAAATTCCAAAAAATTCCCACAAAAGTCTGAAGAACTTGAGAGAAAAGTG</left_flank>
        <right_flank>GAGAAGCACTCTCTAATGCTAATCCTCCTTTCTTTCAAAAAATTCAAAAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATGAAATTAGCTTGTTTTAAGCTTTAAAATGAGCTCAAACACGACCCAGATCCGTCCATTTTCAATTTTCTGCAAAACAAGCGACGCAGGACCGCGACGCACCCGAAGTTTCAAAACCTACGCAACCTAGTCGTGTTTGGGCTCATTTTGAAGCTGGTAACTTGCCAAACTAGGATTTTGAGACGAAAATGTAAGATCAGCACATTTTGAGCTACAAAATGAGCCCAAAACATGACTATTTATTGAAAAAAATGTTCCTCCAAAAAATGTTTTTTTTTCAATTTCAATCGTGTTTGGGCTCATTTTGAAGGAAATAAGCTGAAAATTTTGATTTTTGTGTTTTCAGTCACTTTTTGGACGGTTTGAATGCATTTATGTGCTGTCAAAGTTGAAAAATTGAAACATTGTTGAAACATTGGTTTTCTGGAACCTTCTAGAAAATTCTAGAAAATTCCAAAAAATTCCCACAAAAGTCTGAAGAACTTGAGAGAAAAGTGGGAGAAGCACTCTCTAATGCTAATCCTCCTTTCTTTCAAAAAATTCAAAAAAATTTCCAGAATCTTCTGTCCCAAAAGTCCCGAAATGTCCCAAAAAAACGTGGGGAGGAGGAGGAATGAGAAATTAGTGGGGGGGGGGGGGGGGGGATTTGAATTTTGAAGTGAAAAAATGGAGAAGAAGAAGGAAAAGAAATGCTTGAAGGAGTTGAAAAATTACTCAGCTTTTCCTGGTTTTTGGGTACTTTGGGAGATTAAAATTTTCCAAAAAAAAATTTTTTTTTTGAAAATTGAAACTTTCAATTTGAAAGTGAAAAATGGGTTTTGGTTTTTGAAAAATCTGAAATTTCGGAGAATTCTAGAAATTTTTAGCAGTCAAAAAAATGAACAAAGAGAAAACTATTTCTCGAAAAATTCACATTTTTTAAAGGCGCATATCTCTGAAACTACAGTACCTAGCACAAAGTTGTCAATTACAAAGTTGCTCAGCATAACATTTCACAC</canonical>
            <polymorphic>TCATGAAATTAGCTTGTTTTAAGCTTTAAAATGAGCTCAAACACGACCCAGATCCGTCCATTTTCAATTTTCTGCAAAACAAGCGACGCAGGACCGCGACGCACCCGAAGTTTCAAAACCTACGCAACCTAGTCGTGTTTGGGCTCATTTTGAAGCTGGTAACTTGCCAAACTAGGATTTTGAGACGAAAATGTAAGATCAGCACATTTTGAGCTACAAAATGAGCCCAAAACATGACTATTTATTGAAAAAAATGTTCCTCCAAAAAATGTTTTTTTTTCAATTTCAATCGTGTTTGGGCTCATTTTGAAGGAAATAAGCTGAAAATTTTGATTTTTGTGTTTTCAGTCACTTTTTGGACGGTTTGAATGCATTTATGTGCTGTCAAAGTTGAAAAATTGAAACATTGTTGAAACATTGGTTTTCTGGAACCTTCTAGAAAATTCTAGAAAATTCCAAAAAATTCCCACAAAAGTCTGAAGAACTTGAGAGAAAAGTGSGAGAAGCACTCTCTAATGCTAATCCTCCTTTCTTTCAAAAAATTCAAAAAAATTTCCAGAATCTTCTGTCCCAAAAGTCCCGAAATGTCCCAAAAAAACGTGGGGAGGAGGAGGAATGAGAAATTAGTGGGGGGGGGGGGGGGGGGATTTGAATTTTGAAGTGAAAAAATGGAGAAGAAGAAGGAAAAGAAATGCTTGAAGGAGTTGAAAAATTACTCAGCTTTTCCTGGTTTTTGGGTACTTTGGGAGATTAAAATTTTCCAAAAAAAAATTTTTTTTTTGAAAATTGAAACTTTCAATTTGAAAGTGAAAAATGGGTTTTGGTTTTTGAAAAATCTGAAATTTCGGAGAATTCTAGAAATTTTTAGCAGTCAAAAAAATGAACAAAGAGAAAACTATTTCTCGAAAAATTCACATTTTTTAAAGGCGCATATCTCTGAAACTACAGTACCTAGCACAAAGTTGTCAATTACAAAGTTGCTCAGCATAACATTTCACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAAAGTTGAAAAATTGAAACA</pcr_primer_p1>
		<pcr_primer_p2>CACTAATTTCTCATTCCTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTCAAAGTTGAAAAATTGAAACATTGTTGAAACATTGGTTTTCTGGAACCTTCTAGAAAATTCTAGAAAATTCCAAAAAATTCCCACAAAAGTCTGAAGAACTTGAGAGAAAAGTGGGAGAAGCACTCTCTAATGCTAATCCTCCTTTCTTTCAAAAAATTCAAAAAAATTTCCAGAATCTTCTGTCCCAAAAGTCCCGAAATGTCCCAAAAAAACGTGGGGAGGAGGAGGAATGAGAAATTAGTG</canonical_amplicon>
		<polymorphic_amplicon>GTCAAAGTTGAAAAATTGAAACATTGTTGAAACATTGGTTTTCTGGAACCTTCTAGAAAATTCTAGAAAATTCCAAAAAATTCCCACAAAAGTCTGAAGAACTTGAGAGAAAAGTGSGAGAAGCACTCTCTAATGCTAATCCTCCTTTCTTTCAAAAAATTCAAAAAAATTTCCAGAATCTTCTGTCCCAAAAGTCCCGAAATGTCCCAAAAAAACGTGGGGAGGAGGAGGAATGAGAAATTAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24428</snp_id>
        <super_contig>c000700911.Contig1</super_contig>
        <contig_pos>72901</contig_pos>
        <strand>+</strand>
        <context>GGCTGTAGGG[A/C]TTTTTTTGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGCGACGATTCAGGGCATTGCTCAGGATGCTGAGCAATTGGCTGTAGGG</left_flank>
        <right_flank>TTTTTTTGGATTTTTCAGAAAATTTAGAACATTTTCTCAGTTGGAATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCCGACGGACATGCGGTACAGGAGCTGCTGCCAGCGCTGAAAATCCTATTTTCAGCCAAATCCGAAGAAATGGATTCTGGACCAAAATGGAACCAAATTAAGAATAAATTGTCTTCAAAGGTCTGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAATTTAGAATTTTTGAATTTTTTTTTCAAAATTTCCAGATGCAAGAGGTGCGTATCACTCGTCAACTATCCAATCAGCTACCGGAAACTGGAGCATTGCTCAGCGAGTTACTGTCAAAACAGGAATATCTTAGCAATCAACACGAGAAGGCCGCTGCCAGGAGCATACCATTGGCAGAAGCCGAGAAATTGCTAAATGCGACGATTCAGGGCATTGCTCAGGATGCTGAGCAATTGGCTGTAGGGTTTTTTTTGGATTTTTCAGAAAATTTAGAACATTTTCTCAGTTGGAATTTTTGTTCTAGCTCTTCTGGGAGCTGAGATACACTTTATAGCACAAGAGAGCACTGTGAATTGCGAGAGCGCAGAGAAATCTAGCTTCTCTGTGTCTCTCACACCTCCCCACTGTCTGGCAAATCTCTAAAAGTTCAGCAAACAGAGAAAAAAAAAACGAATCTGGAGGTATGGGGAATCGAACCCCAGACTTCTCGCATGCAAAGCGAGCGCTCTACCCCTGAGCTATACCCCCCACCCTCTTCTTCGAAGTGAATGGCGGTTATAAAAGGGAGGAAAATGGGAGATTTAGGAAGTGTCGTAACTTTGGAAGGAGAAGAGATGCTGAAAAATTTTCAACTAATGAATTGTTGGAAATTTTATGCTGAGCAATTTTGTAGTTGACCACTTTTTTGTAGGTGACTTGGTTTTTGAGATATAAACGCTGGAAGTTGGGGTGTCCCTTGGCCTTTT</canonical>
            <polymorphic>GGCCGACGGACATGCGGTACAGGAGCTGCTGCCAGCGCTGAAAATCCTATTTTCAGCCAAATCCGAAGAAATGGATTCTGGACCAAAATGGAACCAAATTAAGAATAAATTGTCTTCAAAGGTCTGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAATTTAGAATTTTTGAATTTTTTTTTCAAAATTTCCAGATGCAAGAGGTGCGTATCACTCGTCAACTATCCAATCAGCTACCGGAAACTGGAGCATTGCTCAGCGAGTTACTGTCAAAACAGGAATATCTTAGCAATCAACACGAGAAGGCCGCTGCCAGGAGCATACCATTGGCAGAAGCCGAGAAATTGCTAAATGCGACGATTCAGGGCATTGCTCAGGATGCTGAGCAATTGGCTGTAGGGMTTTTTTTGGATTTTTCAGAAAATTTAGAACATTTTCTCAGTTGGAATTTTTGTTCTAGCTCTTCTGGGAGCTGAGATACACTTTATAGCACAAGAGAGCACTGTGAATTGCGAGAGCGCAGAGAAATCTAGCTTCTCTGTGTCTCTCACACCTCCCCACTGTCTGGCAAATCTCTAAAAGTTCAGCAAACAGAGAAAAAAAAAACGAATCTGGAGGTATGGGGAATCGAACCCCAGACTTCTCGCATGCAAAGCGAGCGCTCTACCCCTGAGCTATACCCCCCACCCTCTTCTTCGAAGTGAATGGCGGTTATAAAAGGGAGGAAAATGGGAGATTTAGGAAGTGTCGTAACTTTGGAAGGAGAAGAGATGCTGAAAAATTTTCAACTAATGAATTGTTGGAAATTTTATGCTGAGCAATTTTGTAGTTGACCACTTTTTTGTAGGTGACTTGGTTTTTGAGATATAAACGCTGGAAGTTGGGGTGTCCCTTGGCCTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCACTCGTCAACTATCCAATC</pcr_primer_p1>
		<pcr_primer_p2>TAGAACAAAAATTCCAACTGAGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATCACTCGTCAACTATCCAATCAGCTACCGGAAACTGGAGCATTGCTCAGCGAGTTACTGTCAAAACAGGAATATCTTAGCAATCAACACGAGAAGGCCGCTGCCAGGAGCATACCATTGGCAGAAGCCGAGAAATTGCTAAATGCGACGATTCAGGGCATTGCTCAGGATGCTGAGCAATTGGCTGTAGGGTTTTTTTTGGATTTTTCAGAAAATTTAGAACATTTTCTCAGTTGGAATTTTTGTTCTA</canonical_amplicon>
		<polymorphic_amplicon>TATCACTCGTCAACTATCCAATCAGCTACCGGAAACTGGAGCATTGCTCAGCGAGTTACTGTCAAAACAGGAATATCTTAGCAATCAACACGAGAAGGCCGCTGCCAGGAGCATACCATTGGCAGAAGCCGAGAAATTGCTAAATGCGACGATTCAGGGCATTGCTCAGGATGCTGAGCAATTGGCTGTAGGGMTTTTTTTGGATTTTTCAGAAAATTTAGAACATTTTCTCAGTTGGAATTTTTGTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24429</snp_id>
        <super_contig>c000700911.Contig1</super_contig>
        <contig_pos>73020</contig_pos>
        <strand>+</strand>
        <context>TGCGAGAGCG[C/T]AGAGAAATCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCTGAGATACACTTTATAGCACAAGAGAGCACTGTGAATTGCGAGAGCG</left_flank>
        <right_flank>AGAGAAATCTAGCTTCTCTGTGTCTCTCACACCTCCCCACTGTCTGGCAA</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGTCTGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAATTTAGAATTTTTGAATTTTTTTTTCAAAATTTCCAGATGCAAGAGGTGCGTATCACTCGTCAACTATCCAATCAGCTACCGGAAACTGGAGCATTGCTCAGCGAGTTACTGTCAAAACAGGAATATCTTAGCAATCAACACGAGAAGGCCGCTGCCAGGAGCATACCATTGGCAGAAGCCGAGAAATTGCTAAATGCGACGATTCAGGGCATTGCTCAGGATGCTGAGCAATTGGCTGTAGGGTTTTTTTTGGATTTTTCAGAAAATTTAGAACATTTTCTCAGTTGGAATTTTTGTTCTAGCTCTTCTGGGAGCTGAGATACACTTTATAGCACAAGAGAGCACTGTGAATTGCGAGAGCGCAGAGAAATCTAGCTTCTCTGTGTCTCTCACACCTCCCCACTGTCTGGCAAATCTCTAAAAGTTCAGCAAACAGAGAAAAAAAAAACGAATCTGGAGGTATGGGGAATCGAACCCCAGACTTCTCGCATGCAAAGCGAGCGCTCTACCCCTGAGCTATACCCCCCACCCTCTTCTTCGAAGTGAATGGCGGTTATAAAAGGGAGGAAAATGGGAGATTTAGGAAGTGTCGTAACTTTGGAAGGAGAAGAGATGCTGAAAAATTTTCAACTAATGAATTGTTGGAAATTTTATGCTGAGCAATTTTGTAGTTGACCACTTTTTTGTAGGTGACTTGGTTTTTGAGATATAAACGCTGGAAGTTGGGGTGTCCCTTGGCCTTTTTTCAGCAAAAAACTCTCCGCTGGAAGTTGGGGTGTCCAAGGGCCGTTTATGAAAGAGAATTGGGAAACATAGGTTTTACATCAGGAAATTTGGTTTTGTGAAATTTATAAAACCGATTC</canonical>
            <polymorphic>AGGTCTGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAATTTAGAATTTTTGAATTTTTTTTTCAAAATTTCCAGATGCAAGAGGTGCGTATCACTCGTCAACTATCCAATCAGCTACCGGAAACTGGAGCATTGCTCAGCGAGTTACTGTCAAAACAGGAATATCTTAGCAATCAACACGAGAAGGCCGCTGCCAGGAGCATACCATTGGCAGAAGCCGAGAAATTGCTAAATGCGACGATTCAGGGCATTGCTCAGGATGCTGAGCAATTGGCTGTAGGGTTTTTTTTGGATTTTTCAGAAAATTTAGAACATTTTCTCAGTTGGAATTTTTGTTCTAGCTCTTCTGGGAGCTGAGATACACTTTATAGCACAAGAGAGCACTGTGAATTGCGAGAGCGYAGAGAAATCTAGCTTCTCTGTGTCTCTCACACCTCCCCACTGTCTGGCAAATCTCTAAAAGTTCAGCAAACAGAGAAAAAAAAAACGAATCTGGAGGTATGGGGAATCGAACCCCAGACTTCTCGCATGCAAAGCGAGCGCTCTACCCCTGAGCTATACCCCCCACCCTCTTCTTCGAAGTGAATGGCGGTTATAAAAGGGAGGAAAATGGGAGATTTAGGAAGTGTCGTAACTTTGGAAGGAGAAGAGATGCTGAAAAATTTTCAACTAATGAATTGTTGGAAATTTTATGCTGAGCAATTTTGTAGTTGACCACTTTTTTGTAGGTGACTTGGTTTTTGAGATATAAACGCTGGAAGTTGGGGTGTCCCTTGGCCTTTTTTCAGCAAAAAACTCTCCGCTGGAAGTTGGGGTGTCCAAGGGCCGTTTATGAAAGAGAATTGGGAAACATAGGTTTTACATCAGGAAATTTGGTTTTGTGAAATTTATAAAACCGATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>499 360 141</canonical_bands>
                <polymorphic_bands>640 360</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAGCTGAGATACACTTTATAGC</pcr_primer_p1>
		<pcr_primer_p2>TTATAACCGCCATTCACTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGAGCTGAGATACACTTTATAGCACAAGAGAGCACTGTGAATTGCGAGAGCGCAGAGAAATCTAGCTTCTCTGTGTCTCTCACACCTCCCCACTGTCTGGCAAATCTCTAAAAGTTCAGCAAACAGAGAAAAAAAAAACGAATCTGGAGGTATGGGGAATCGAACCCCAGACTTCTCGCATGCAAAGCGAGCGCTCTACCCCTGAGCTATACCCCCCACCCTCTTCTTCGAAGTGAATGGCGGTTATAA</canonical_amplicon>
		<polymorphic_amplicon>GGAGCTGAGATACACTTTATAGCACAAGAGAGCACTGTGAATTGCGAGAGCGYAGAGAAATCTAGCTTCTCTGTGTCTCTCACACCTCCCCACTGTCTGGCAAATCTCTAAAAGTTCAGCAAACAGAGAAAAAAAAAACGAATCTGGAGGTATGGGGAATCGAACCCCAGACTTCTCGCATGCAAAGCGAGCGCTCTACCCCTGAGCTATACCCCCCACCCTCTTCTTCGAAGTGAATGGCGGTTATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24430</snp_id>
        <super_contig>c000700911.Contig1</super_contig>
        <contig_pos>73184</contig_pos>
        <strand>+</strand>
        <context>CTATACCCCC[G/T]ACCCTCTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCAGACTTCTCGCATGCAAAGCGAGCGCTCTACCCCTGAGCTATACCCCC</left_flank>
        <right_flank>ACCCTCTTCTTCGAAGTGAATGGCGGTTATAAAAGGGAGGAAAATGGGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTCCAGATGCAAGAGGTGCGTATCACTCGTCAACTATCCAATCAGCTACCGGAAACTGGAGCATTGCTCAGCGAGTTACTGTCAAAACAGGAATATCTTAGCAATCAACACGAGAAGGCCGCTGCCAGGAGCATACCATTGGCAGAAGCCGAGAAATTGCTAAATGCGACGATTCAGGGCATTGCTCAGGATGCTGAGCAATTGGCTGTAGGGTTTTTTTTGGATTTTTCAGAAAATTTAGAACATTTTCTCAGTTGGAATTTTTGTTCTAGCTCTTCTGGGAGCTGAGATACACTTTATAGCACAAGAGAGCACTGTGAATTGCGAGAGCGCAGAGAAATCTAGCTTCTCTGTGTCTCTCACACCTCCCCACTGTCTGGCAAATCTCTAAAAGTTCAGCAAACAGAGAAAAAAAAAACGAATCTGGAGGTATGGGGAATCGAACCCCAGACTTCTCGCATGCAAAGCGAGCGCTCTACCCCTGAGCTATACCCCCCACCCTCTTCTTCGAAGTGAATGGCGGTTATAAAAGGGAGGAAAATGGGAGATTTAGGAAGTGTCGTAACTTTGGAAGGAGAAGAGATGCTGAAAAATTTTCAACTAATGAATTGTTGGAAATTTTATGCTGAGCAATTTTGTAGTTGACCACTTTTTTGTAGGTGACTTGGTTTTTGAGATATAAACGCTGGAAGTTGGGGTGTCCCTTGGCCTTTTTTCAGCAAAAAACTCTCCGCTGGAAGTTGGGGTGTCCAAGGGCCGTTTATGAAAGAGAATTGGGAAACATAGGTTTTACATCAGGAAATTTGGTTTTGTGAAATTTATAAAACCGATTCCGGAGATTAGGTTAAAAAACTAGAAAGATAGTAGTTTTTCAAAAATTCAAAAATGTGAGAAAATTCCGACAAAATATTACTCAGCATAAAATTTTAAACATTTTTGAAGTTCACAACTTTTTTCTAGCTACTGTAGTTTAAGAGATATGCGCTTTTAAACTACC</canonical>
            <polymorphic>AATTTCCAGATGCAAGAGGTGCGTATCACTCGTCAACTATCCAATCAGCTACCGGAAACTGGAGCATTGCTCAGCGAGTTACTGTCAAAACAGGAATATCTTAGCAATCAACACGAGAAGGCCGCTGCCAGGAGCATACCATTGGCAGAAGCCGAGAAATTGCTAAATGCGACGATTCAGGGCATTGCTCAGGATGCTGAGCAATTGGCTGTAGGGTTTTTTTTGGATTTTTCAGAAAATTTAGAACATTTTCTCAGTTGGAATTTTTGTTCTAGCTCTTCTGGGAGCTGAGATACACTTTATAGCACAAGAGAGCACTGTGAATTGCGAGAGCGCAGAGAAATCTAGCTTCTCTGTGTCTCTCACACCTCCCCACTGTCTGGCAAATCTCTAAAAGTTCAGCAAACAGAGAAAAAAAAAACGAATCTGGAGGTATGGGGAATCGAACCCCAGACTTCTCGCATGCAAAGCGAGCGCTCTACCCCTGAGCTATACCCCCKACCCTCTTCTTCGAAGTGAATGGCGGTTATAAAAGGGAGGAAAATGGGAGATTTAGGAAGTGTCGTAACTTTGGAAGGAGAAGAGATGCTGAAAAATTTTCAACTAATGAATTGTTGGAAATTTTATGCTGAGCAATTTTGTAGTTGACCACTTTTTTGTAGGTGACTTGGTTTTTGAGATATAAACGCTGGAAGTTGGGGTGTCCCTTGGCCTTTTTTCAGCAAAAAACTCTCCGCTGGAAGTTGGGGTGTCCAAGGGCCGTTTATGAAAGAGAATTGGGAAACATAGGTTTTACATCAGGAAATTTGGTTTTGTGAAATTTATAAAACCGATTCCGGAGATTAGGTTAAAAAACTAGAAAGATAGTAGTTTTTCAAAAATTCAAAAATGTGAGAAAATTCCGACAAAATATTACTCAGCATAAAATTTTAAACATTTTTGAAGTTCACAACTTTTTTCTAGCTACTGTAGTTTAAGAGATATGCGCTTTTAAACTACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>184 126 89 85 76 66 56 51 48 44 38 36 21 17 14 10 10 8 7 7 5 2</canonical_bands>
                <polymorphic_bands>184 143 89 85 76 66 56 51 48 44 38 36 21 14 10 10 8 7 7 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAAATCTAGCTTCTCTGTGTCT</pcr_primer_p1>
		<pcr_primer_p2>ATCTCTTCTCCTTCCAAAGTTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGAAATCTAGCTTCTCTGTGTCTCTCACACCTCCCCACTGTCTGGCAAATCTCTAAAAGTTCAGCAAACAGAGAAAAAAAAAACGAATCTGGAGGTATGGGGAATCGAACCCCAGACTTCTCGCATGCAAAGCGAGCGCTCTACCCCTGAGCTATACCCCCCACCCTCTTCTTCGAAGTGAATGGCGGTTATAAAAGGGAGGAAAATGGGAGATTTAGGAAGTGTCGTAACTTTGGAAGGAGAAGAGAT</canonical_amplicon>
		<polymorphic_amplicon>GAGAAATCTAGCTTCTCTGTGTCTCTCACACCTCCCCACTGTCTGGCAAATCTCTAAAAGTTCAGCAAACAGAGAAAAAAAAAACGAATCTGGAGGTATGGGGAATCGAACCCCAGACTTCTCGCATGCAAAGCGAGCGCTCTACCCCTGAGCTATACCCCCKACCCTCTTCTTCGAAGTGAATGGCGGTTATAAAAGGGAGGAAAATGGGAGATTTAGGAAGTGTCGTAACTTTGGAAGGAGAAGAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24431</snp_id>
        <super_contig>c000700911.Contig1</super_contig>
        <contig_pos>76725</contig_pos>
        <strand></strand>
        <context>caaaattgaa[T/G]gatttgcatc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GCGCGTCGCGGTCGTGCGTCGCGGTTTTTTGGGAGAGAGTCAAAATTGAA</left_flank>
        <right_flank>GATTTGCATCGTGTTTGGGTTCATTTTGAAGCTCGTAAGCCCAGAAATTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCAATTACAGTAATCCAAAAAAAAAACTTTTTCAAAAATTTATTTTTCAGATCAATGTGCCACGTGGTGACGATGCAAAATCGGATTTGAGCAGTGGAGATGATTTTTGATAAATTGGATTACTGTATTTTTCAAATTTTCAAACAAATGAATGAGTCGTCGACCGTCTTGCTGAACTATTTCGTTTTCTGAAATTATTGATTTTTTGTTTTTTTTTTTGAGATTACTGTAGCTGAAACTTACGATTTTGATCGATCAAAATCGGTTTTCAGACAATACATGTAGAGAGGGACCGTGGGAAATTGAAGGAGATAAATTATATAGACGATTGCGTCGGCCTGGAATTGATGTTTTTAAAATTTTAGGACTCAGAAATTTGAACTTAGAAGATTATGAGCTTCAAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTCAAACTTCGGGCGCGTCGCGGTCGTGCGTCGCGGTTTTTTGGGAGAGAGTCAAAATTGAATGATTTGCATCGTGTTTGGGTTCATTTTGAAGCTCGTAAGCCCAGAAATTCAGAAATTTTTATTTCAAATTATTTGGTTCAGGTTTAAAAGTTTTAGAGTCAGTTCTTTTTTTTTCAAAATTTTCAGGCAAAACAGATTTCAATCATAAAACGCTTCCAAATAGTCCAATTGAGTCATGGGCGCATTTTTTAGGTTTCTTAAGTTTTGTGCTTCAAAATGAGCCCAAACACGACCAAGCTCCGCCCACTTTGAAATTCCACCTAGACACGCAACGCACGACCGCGACGCGCGAGAAAACTCAAAGTGGGCGGAATCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTTGAGCCAAGAAACTGAAAAATTGCAATTTCAAATAATTTTGCTCAGTTCTAAACGTTTAAGAGCCCTTTTTTTCAAAAGTTTCCGACAAAACAAATTCGGATCATAAAGCGCTGGTGGCCTAATAGTCCAATTGACTCATAAACGCATTTTTTGG</canonical>
            <polymorphic>AGCAATTACAGTAATCCAAAAAAAAAACTTTTTCAAAAATTTATTTTTCAGATCAATGTGCCACGTGGTGACGATGCAAAATCGGATTTGAGCAGTGGAGATGATTTTTGATAAATTGGATTACTGTATTTTTCAAATTTTCAAACAAATGAATGAGTCGTCGACCGTCTTGCTGAACTATTTCGTTTTCTGAAATTATTGATTTTTTGTTTTTTTTTTTGAGATTACTGTAGCTGAAACTTACGATTTTGATCGATCAAAATCGGTTTTCAGACAATACATGTAGAGAGGGACCGTGGGAAATTGAAGGAGATAAATTATATAGACGATTGCGTCGGCCTGGAATTGATGTTTTTAAAATTTTAGGACTCAGAAATTTGAACTTAGAAGATTATGAGCTTCAAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTCAAACTTCGGGCGCGTCGCGGTCGTGCGTCGCGGTTTTTTGGGAGAGAGTCAAAATTGAAKGATTTGCATCGTGTTTGGGTTCATTTTGAAGCTCGTAAGCCCAGAAATTCAGAAATTTTTATTTCAAATTATTTGGTTCAGGTTTAAAAGTTTTAGAGTCAGTTCTTTTTTTTTCAAAATTTTCAGGCAAAACAGATTTCAATCATAAAACGCTTCCAAATAGTCCAATTGAGTCATGGGCGCATTTTTTAGGTTTCTTAAGTTTTGTGCTTCAAAATGAGCCCAAACACGACCAAGCTCCGCCCACTTTGAAATTCCACCTAGACACGCAACGCACGACCGCGACGCGCGAGAAAACTCAAAGTGGGCGGAATCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTTGAGCCAAGAAACTGAAAAATTGCAATTTCAAATAATTTTGCTCAGTTCTAAACGTTTAAGAGCCCTTTTTTTCAAAAGTTTCCGACAAAACAAATTCGGATCATAAAGCGCTGGTGGCCTAATAGTCCAATTGACTCATAAACGCATTTTTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGGAAATTGAAGGAGATAA</pcr_primer_p1>
		<pcr_primer_p2>GACTCAAATCTCGGCTTTAAC</pcr_primer_p2>
		<pcr_amplicon_size>925</pcr_amplicon_size>
		<canonical_amplicon>GTGGGAAATTGAAGGAGATAAATTATATAGACGATTGCGTCGGCCTGGAATTGATGTTTTTAAAATTTTAGGACTCAGAAATTTGAACTTAGAAGATTATGAGCTTCAAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTCAAACTTCGGGCGCGTCGCGGTCGTGCGTCGCGGTTTTTTGGGAGAGAGTCAAAATTGAATGATTTGCATCGTGTTTGGGT</canonical_amplicon>
		<polymorphic_amplicon>GTGGGAAATTGAAGGAGATAAATTATATAGACGATTGCGTCGGCCTGGAATTGATGTTTTTAAAATTTTAGGACTCAGAAATTTGAACTTAGAAGATTATGAGCTTCAAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTCAAACTTCGGGCGCGTCGCGGTCGTGCGTCGCGGTTTTTTGGGAGAGAGTCAAAATTGAAKGATTTGCATCGTGTTTGGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24432</snp_id>
        <super_contig>c000700911.Contig1</super_contig>
        <contig_pos>76959</contig_pos>
        <strand></strand>
        <context>caaacacgac[C/T]aagctccgcc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTTTAGGTTTCTTAAGTTTTGTGCTTCAAAATGAGCCCAAACACGAC</left_flank>
        <right_flank>AAGCTCCGCCCACTTTGAAATTCCACCTAGACACGCAACGCACGACCGCG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAACTTACGATTTTGATCGATCAAAATCGGTTTTCAGACAATACATGTAGAGAGGGACCGTGGGAAATTGAAGGAGATAAATTATATAGACGATTGCGTCGGCCTGGAATTGATGTTTTTAAAATTTTAGGACTCAGAAATTTGAACTTAGAAGATTATGAGCTTCAAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTCAAACTTCGGGCGCGTCGCGGTCGTGCGTCGCGGTTTTTTGGGAGAGAGTCAAAATTGAATGATTTGCATCGTGTTTGGGTTCATTTTGAAGCTCGTAAGCCCAGAAATTCAGAAATTTTTATTTCAAATTATTTGGTTCAGGTTTAAAAGTTTTAGAGTCAGTTCTTTTTTTTTCAAAATTTTCAGGCAAAACAGATTTCAATCATAAAACGCTTCCAAATAGTCCAATTGAGTCATGGGCGCATTTTTTAGGTTTCTTAAGTTTTGTGCTTCAAAATGAGCCCAAACACGACCAAGCTCCGCCCACTTTGAAATTCCACCTAGACACGCAACGCACGACCGCGACGCGCGAGAAAACTCAAAGTGGGCGGAATCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTTGAGCCAAGAAACTGAAAAATTGCAATTTCAAATAATTTTGCTCAGTTCTAAACGTTTAAGAGCCCTTTTTTTCAAAAGTTTCCGACAAAACAAATTCGGATCATAAAGCGCTGGTGGCCTAATAGTCCAATTGACTCATAAACGCATTTTTTGGGTTTTTCAAGTTTTGCGCTTCAAAATGAGCCCACACACGACTAGGTTCAACCCACTTTGAAATTGCAGCAAGACACGCGACGCACGACCGCGACGCGCGAGAAAACTCAAAGTGGGCGGAATCTAGTCGTGTTTAGGCTAATTTTGAAGCACACGATGAGCCAAATCTAGTGAAAATGCGCAAAATTCGGTATGAGCAAGTTAAAGCCGAGATTTGAGTCTTCTTGTCCTGTAT</canonical>
            <polymorphic>TGAAACTTACGATTTTGATCGATCAAAATCGGTTTTCAGACAATACATGTAGAGAGGGACCGTGGGAAATTGAAGGAGATAAATTATATAGACGATTGCGTCGGCCTGGAATTGATGTTTTTAAAATTTTAGGACTCAGAAATTTGAACTTAGAAGATTATGAGCTTCAAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTCAAACTTCGGGCGCGTCGCGGTCGTGCGTCGCGGTTTTTTGGGAGAGAGTCAAAATTGAATGATTTGCATCGTGTTTGGGTTCATTTTGAAGCTCGTAAGCCCAGAAATTCAGAAATTTTTATTTCAAATTATTTGGTTCAGGTTTAAAAGTTTTAGAGTCAGTTCTTTTTTTTTCAAAATTTTCAGGCAAAACAGATTTCAATCATAAAACGCTTCCAAATAGTCCAATTGAGTCATGGGCGCATTTTTTAGGTTTCTTAAGTTTTGTGCTTCAAAATGAGCCCAAACACGACYAAGCTCCGCCCACTTTGAAATTCCACCTAGACACGCAACGCACGACCGCGACGCGCGAGAAAACTCAAAGTGGGCGGAATCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTTGAGCCAAGAAACTGAAAAATTGCAATTTCAAATAATTTTGCTCAGTTCTAAACGTTTAAGAGCCCTTTTTTTCAAAAGTTTCCGACAAAACAAATTCGGATCATAAAGCGCTGGTGGCCTAATAGTCCAATTGACTCATAAACGCATTTTTTGGGTTTTTCAAGTTTTGCGCTTCAAAATGAGCCCACACACGACTAGGTTCAACCCACTTTGAAATTGCAGCAAGACACGCGACGCACGACCGCGACGCGCGAGAAAACTCAAAGTGGGCGGAATCTAGTCGTGTTTAGGCTAATTTTGAAGCACACGATGAGCCAAATCTAGTGAAAATGCGCAAAATTCGGTATGAGCAAGTTAAAGCCGAGATTTGAGTCTTCTTGTCCTGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGGAAATTGAAGGAGATAA</pcr_primer_p1>
		<pcr_primer_p2>GACTCAAATCTCGGCTTTAAC</pcr_primer_p2>
		<pcr_amplicon_size>925</pcr_amplicon_size>
		<canonical_amplicon>GTGGGAAATTGAAGGAGATAAATTATATAGACGATTGCGTCGGCCTGGAATTGATGTTTTTAAAATTTTAGGACTCAGAAATTTGAACTTAGAAGATTATGAGCTTCAAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTCAAACTTCGGGCGCGTCGCGGTCGTGCGTCGCGGTTTTTTGGGAGAGAGTCAAAATTGAATGATTTGCATCGTGTTTGGGTTCATTTTGAAGCTCGTAAGCCCAGAAATTCAGAAATTTTTATTTCAAATTATTTGGTTCAGGTTTAAAAGTTTTAGAGTCAGTTCTTTTTTTTTCAAAATTTTCAGGCAAAACAGATTTCAATCATAAAACGCTTCCAAATAGTCCAATTGAGTCATGGGCGCATTTTTTAGGTTTCTTAAGTTTTGTGCTTCAAAATGAGCCCAAACACGACCAAGCTCCGCCCACTTTGAAATTCCACCTAGACACGCAACGCACGACCGCGACGCGCGAGAAAACTCAAAGTGGGCGGAATCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTTGAGCCAAGAAACTGAAAAATTGCAATTTCAAATAATTTTGCTCAGTTCTAAACGTTTAAGAGCCCTTTTTTTCAAAAGTTTCCGACAAAACAAATTCGGATCATAAAGCGCTGGTGGCCTAATAGTCCAATTGACTCATAAACGCATTTTTTGGGTTTTTCAAGTTTTGCGCTTCAAAATGAGCCCACACACGACTAGGTTCAACCCACTTTGAAATTGCAGCAAGACACGCGACGCACGACCGCGACGCGCGAGAAAACTCAAAGTGGGCGGAATCTAGTCGTGTTTAGGCTAATTTTGAAGCACACGATGAGCCAAATCTAGTGAAAATGCGCAAAATTCGGTATGAGCAAGTTAAAGCCGAGATTTGAGTC</canonical_amplicon>
		<polymorphic_amplicon>GTGGGAAATTGAAGGAGATAAATTATATAGACGATTGCGTCGGCCTGGAATTGATGTTTTTAAAATTTTAGGACTCAGAAATTTGAACTTAGAAGATTATGAGCTTCAAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTCAAACTTCGGGCGCGTCGCGGTCGTGCGTCGCGGTTTTTTGGGAGAGAGTCAAAATTGAATGATTTGCATCGTGTTTGGGTTCATTTTGAAGCTCGTAAGCCCAGAAATTCAGAAATTTTTATTTCAAATTATTTGGTTCAGGTTTAAAAGTTTTAGAGTCAGTTCTTTTTTTTTCAAAATTTTCAGGCAAAACAGATTTCAATCATAAAACGCTTCCAAATAGTCCAATTGAGTCATGGGCGCATTTTTTAGGTTTCTTAAGTTTTGTGCTTCAAAATGAGCCCAAACACGACYAAGCTCCGCCCACTTTGAAATTCCACCTAGACACGCAACGCACGACCGCGACGCGCGAGAAAACTCAAAGTGGGCGGAATCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTTGAGCCAAGAAACTGAAAAATTGCAATTTCAAATAATTTTGCTCAGTTCTAAACGTTTAAGAGCCCTTTTTTTCAAAAGTTTCCGACAAAACAAATTCGGATCATAAAGCGCTGGTGGCCTAATAGTCCAATTGACTCATAAACGCATTTTTTGGGTTTTTCAAGTTTTGCGCTTCAAAATGAGCCCACACACGACTAGGTTCAACCCACTTTGAAATTGCAGCAAGACACGCGACGCACGACCGCGACGCGCGAGAAAACTCAAAGTGGGCGGAATCTAGTCGTGTTTAGGCTAATTTTGAAGCACACGATGAGCCAAATCTAGTGAAAATGCGCAAAATTCGGTATGAGCAAGTTAAAGCCGAGATTTGAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24433</snp_id>
        <super_contig>c000700929.Contig1</super_contig>
        <contig_pos>1183</contig_pos>
        <strand>+</strand>
        <context>TTGTGGCATA[A/G]GCTTAGCTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATA</left_flank>
        <right_flank>GCTTAGCTATTTGCCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTCGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGCCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTAGTTATGGCATAGGCTTAGCTATATTTGTGGCATAGGCTTATCTATTTGTGGCATAGGCTTAAACACTATAAAACGTTTGCTTACCACGATGCTGAAAAAGGGATACTGGAGACGTTCCCGATTAAAAACAAAAGAAACTCGAAAAATTAAAACTCAACATTTTTGGATTGAAATTATATTAATACTAATAATAGAAATTGAGATTCTGTATTATACCGACTGTTGAAAAGTAACAAACAAAACA</canonical>
            <polymorphic>TGGCATAGGCTTAGCTTTTTGTGGCATARGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTCGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGCCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTAGTTATGGCATAGGCTTAGCTATATTTGTGGCATAGGCTTATCTATTTGTGGCATAGGCTTAAACACTATAAAACGTTTGCTTACCACGATGCTGAAAAAGGGATACTGGAGACGTTCCCGATTAAAAACAAAAGAAACTCGAAAAATTAAAACTCAACATTTTTGGATTGAAATTATATTAATACTAATAATAGAAATTGAGATTCTGTATTATACCGACTGTTGAAAAGTAACAAACAAAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>187 21 21 21 21 18 17 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 15 15 15 9 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5</canonical_bands>
                <polymorphic_bands>187 21 21 21 21 21 18 17 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 15 15 15 9 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGCTTTTTGTGGCATAGC</pcr_primer_p1>
		<pcr_primer_p2>GGTAAGCAAACGTTTTATAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>396</pcr_amplicon_size>
		<canonical_amplicon>TTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGCCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTAGTTATGGCATAGGCTTAGCTATATTTGTGGCATAGGCTTATCTATTTGTGGCATAGGCTTAAACACTATAAAACGTTTGCTTACC</canonical_amplicon>
		<polymorphic_amplicon>TTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGCCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTAGTTATGGCATAGGCTTAGCTATATTTGTGGCATAGGCTTATCTATTTGTGGCATAGGCTTAAACACTATAAAACGTTTGCTTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24434</snp_id>
        <super_contig>c000700929.Contig1</super_contig>
        <contig_pos>1197</contig_pos>
        <strand>+</strand>
        <context>TAGCTATTTG[C/T]CGGCATARGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTG</left_flank>
        <right_flank>CGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTATGGCATAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTCGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGCCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTAGTTATGGCATAGGCTTAGCTATATTTGTGGCATAGGCTTATCTATTTGTGGCATAGGCTTAAACACTATAAAACGTTTGCTTACCACGATGCTGAAAAAGGGATACTGGAGACGTTCCCGATTAAAAACAAAAGAAACTCGAAAAATTAAAACTCAACATTTTTGGATTGAAATTATATTAATACTAATAATAGAAATTGAGATTCTGTATTATACCGACTGTTGAAAAGTAACAAACAAAACAAAACTACAGTAATC</canonical>
            <polymorphic>CTTTTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTCGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGYCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTAGTTATGGCATAGGCTTAGCTATATTTGTGGCATAGGCTTATCTATTTGTGGCATAGGCTTAAACACTATAAAACGTTTGCTTACCACGATGCTGAAAAAGGGATACTGGAGACGTTCCCGATTAAAAACAAAAGAAACTCGAAAAATTAAAACTCAACATTTTTGGATTGAAATTATATTAATACTAATAATAGAAATTGAGATTCTGTATTATACCGACTGTTGAAAAGTAACAAACAAAACAAAACTACAGTAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCCGGC</site>
                <isoschizomers>
                    <enzyme>MroNI</enzyme>
                    <enzyme>NaeI</enzyme>
                    <enzyme>NgoAIV</enzyme>
                    <enzyme>NgoMIV</enzyme>
                    <enzyme>PdiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATAGCTATTTGTGGCATAGG</pcr_primer_p1>
		<pcr_primer_p2>GGTAAGCAAACGTTTTATAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>382</pcr_amplicon_size>
		<canonical_amplicon>CATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGCCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTAGTTATGGCATAGGCTTAGCTATATTTGTGGCATAGGCTTATCTATTTGTGGCATAGGCTTAAACACTATAAAACGTTTGCTTACC</canonical_amplicon>
		<polymorphic_amplicon>CATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGYCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTAGTTATGGCATAGGCTTAGCTATATTTGTGGCATAGGCTTATCTATTTGTGGCATAGGCTTAAACACTATAAAACGTTTGCTTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24435</snp_id>
        <super_contig>c000700929.Contig1</super_contig>
        <contig_pos>1205</contig_pos>
        <strand>+</strand>
        <context>TGYCGGCATA[A/G]GCTTAGCTWT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGCCGGCATA</left_flank>
        <right_flank>GCTTAGCTATTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTCGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGCCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTAGTTATGGCATAGGCTTAGCTATATTTGTGGCATAGGCTTATCTATTTGTGGCATAGGCTTAAACACTATAAAACGTTTGCTTACCACGATGCTGAAAAAGGGATACTGGAGACGTTCCCGATTAAAAACAAAAGAAACTCGAAAAATTAAAACTCAACATTTTTGGATTGAAATTATATTAATACTAATAATAGAAATTGAGATTCTGTATTATACCGACTGTTGAAAAGTAACAAACAAAACAAAACTACAGTAATCCGAACAAT</canonical>
            <polymorphic>GGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTCGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGCCGGCATARGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTAGTTATGGCATAGGCTTAGCTATATTTGTGGCATAGGCTTATCTATTTGTGGCATAGGCTTAAACACTATAAAACGTTTGCTTACCACGATGCTGAAAAAGGGATACTGGAGACGTTCCCGATTAAAAACAAAAGAAACTCGAAAAATTAAAACTCAACATTTTTGGATTGAAATTATATTAATACTAATAATAGAAATTGAGATTCTGTATTATACCGACTGTTGAAAAGTAACAAACAAAACAAAACTACAGTAATCCGAACAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>209 21 21 21 21 18 17 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 15 15 15 8 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5</canonical_bands>
                <polymorphic_bands>209 22 21 21 21 21 18 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 15 15 15 8 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGGCATAGGCTTAGCTATTT</pcr_primer_p1>
		<pcr_primer_p2>GGTAAGCAAACGTTTTATAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>371</pcr_amplicon_size>
		<canonical_amplicon>GTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTCGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGCCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTAGTTATGGCATAGGCTTAGCTATATTTGTGGCATAGGCTTATCTATTTGTGGCATAGGCTTAAACACTATAAAACGTTTGCTTACC</canonical_amplicon>
		<polymorphic_amplicon>GTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTCGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGCCGGCATARGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTAGTTATGGCATAGGCTTAGCTATATTTGTGGCATAGGCTTATCTATTTGTGGCATAGGCTTAAACACTATAAAACGTTTGCTTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24436</snp_id>
        <super_contig>c000700929.Contig1</super_contig>
        <contig_pos>1214</contig_pos>
        <strand>+</strand>
        <context>ARGCTTAGCT[A/T]TTTGTGGCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTAGCTATTTGTGGCATAGGCTTAGCTATTTGCCGGCATAGGCTTAGCT</left_flank>
        <right_flank>TTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTCGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGCCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTAGTTATGGCATAGGCTTAGCTATATTTGTGGCATAGGCTTATCTATTTGTGGCATAGGCTTAAACACTATAAAACGTTTGCTTACCACGATGCTGAAAAAGGGATACTGGAGACGTTCCCGATTAAAAACAAAAGAAACTCGAAAAATTAAAACTCAACATTTTTGGATTGAAATTATATTAATACTAATAATAGAAATTGAGATTCTGTATTATACCGACTGTTGAAAAGTAACAAACAAAACAAAACTACAGTAATCCGAACAATAAGAAGAAA</canonical>
            <polymorphic>TTAGCTATTTGTGGCATAGGCTTAGCTWTTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTCGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGCCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTAGTTATGGCATAGGCTTAGCTATATTTGTGGCATAGGCTTATCTATTTGTGGCATAGGCTTAAACACTATAAAACGTTTGCTTACCACGATGCTGAAAAAGGGATACTGGAGACGTTCCCGATTAAAAACAAAAGAAACTCGAAAAATTAAAACTCAACATTTTTGGATTGAAATTATATTAATACTAATAATAGAAATTGAGATTCTGTATTATACCGACTGTTGAAAAGTAACAAACAAAACAAAACTACAGTAATCCGAACAATAAGAAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCATAGGCTTAGCTATTTGTG</pcr_primer_p1>
		<pcr_primer_p2>GGTAAGCAAACGTTTTATAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>368</pcr_amplicon_size>
		<canonical_amplicon>GCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGCCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTAGTTATGGCATAGGCTTAGCTATATTTGTGGCATAGGCTTATCTATTTGTGGCATAGGCTTAAACACTATAAAACGTTTGCTTACC</canonical_amplicon>
		<polymorphic_amplicon>GCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGCCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTAGTTATGGCATAGGCTTAGCTATATTTGTGGCATAGGCTTATCTATTTGTGGCATAGGCTTAAACACTATAAAACGTTTGCTTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24437</snp_id>
        <super_contig>c000700929.Contig1</super_contig>
        <contig_pos>1226</contig_pos>
        <strand>+</strand>
        <context>TTGTGGCATA[A/G]GCTTAGCTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGCATAGGCTTAGCTATTTGCCGGCATAGGCTTAGCTATTTGTGGCATA</left_flank>
        <right_flank>GCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTCGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGCCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTAGTTATGGCATAGGCTTAGCTATATTTGTGGCATAGGCTTATCTATTTGTGGCATAGGCTTAAACACTATAAAACGTTTGCTTACCACGATGCTGAAAAAGGGATACTGGAGACGTTCCCGATTAAAAACAAAAGAAACTCGAAAAATTAAAACTCAACATTTTTGGATTGAAATTATATTAATACTAATAATAGAAATTGAGATTCTGTATTATACCGACTGTTGAAAAGTAACAAACAAAACAAAACTACAGTAATCCGAACAATAAGAAGAAACAATTATATTTA</canonical>
            <polymorphic>GGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATARGCTTAGCTATTCGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGCCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTAGTTATGGCATAGGCTTAGCTATATTTGTGGCATAGGCTTATCTATTTGTGGCATAGGCTTAAACACTATAAAACGTTTGCTTACCACGATGCTGAAAAAGGGATACTGGAGACGTTCCCGATTAAAAACAAAAGAAACTCGAAAAATTAAAACTCAACATTTTTGGATTGAAATTATATTAATACTAATAATAGAAATTGAGATTCTGTATTATACCGACTGTTGAAAAGTAACAAACAAAACAAAACTACAGTAATCCGAACAATAAGAAGAAACAATTATATTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>230 21 21 21 21 18 17 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 15 15 15 8 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5</canonical_bands>
                <polymorphic_bands>230 21 21 21 21 21 18 17 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 15 15 15 8 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCATAGGCTTAGCTATTTGTG</pcr_primer_p1>
		<pcr_primer_p2>GGTAAGCAAACGTTTTATAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>368</pcr_amplicon_size>
		<canonical_amplicon>GCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATARGCTTAGCTATTCGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGCCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTAGTTATGGCATAGGCTTAGCTATATTTGTGGCATAGGCTTATCTATTTGTGGCATAGGCTTAAACACTATAAAACGTTTGCTTACC</canonical_amplicon>
		<polymorphic_amplicon>GCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATARGCTTAGCTATTCGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGCCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTAGTTATGGCATAGGCTTAGCTATATTTGTGGCATAGGCTTATCTATTTGTGGCATAGGCTTAAACACTATAAAACGTTTGCTTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24438</snp_id>
        <super_contig>c000700929.Contig1</super_contig>
        <contig_pos>1247</contig_pos>
        <strand>+</strand>
        <context>TTATGGCATA[A/G]GCTTAGCTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTATGGCATA</left_flank>
        <right_flank>GCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTCGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGCCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTAGTTATGGCATAGGCTTAGCTATATTTGTGGCATAGGCTTATCTATTTGTGGCATAGGCTTAAACACTATAAAACGTTTGCTTACCACGATGCTGAAAAAGGGATACTGGAGACGTTCCCGATTAAAAACAAAAGAAACTCGAAAAATTAAAACTCAACATTTTTGGATTGAAATTATATTAATACTAATAATAGAAATTGAGATTCTGTATTATACCGACTGTTGAAAAGTAACAAACAAAACAAAACTACAGTAATCCGAACAATAAGAAGAAACAATTATATTTATGGTTGAAGATCAACTGGGTG</canonical>
            <polymorphic>GGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTCGTGGCATACGCTTAGCTATTTATGGCATARGCTTAGCTTTTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGCCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTAGTTATGGCATAGGCTTAGCTATATTTGTGGCATAGGCTTATCTATTTGTGGCATAGGCTTAAACACTATAAAACGTTTGCTTACCACGATGCTGAAAAAGGGATACTGGAGACGTTCCCGATTAAAAACAAAAGAAACTCGAAAAATTAAAACTCAACATTTTTGGATTGAAATTATATTAATACTAATAATAGAAATTGAGATTCTGTATTATACCGACTGTTGAAAAGTAACAAACAAAACAAAACTACAGTAATCCGAACAATAAGAAGAAACAATTATATTTATGGTTGAAGATCAACTGGGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>251 21 21 21 21 18 17 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 15 15 15 8 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5</canonical_bands>
                <polymorphic_bands>251 21 21 21 21 21 18 17 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 16 15 15 15 8 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCATAGGCTTAGCTATTTGTG</pcr_primer_p1>
		<pcr_primer_p2>GGTAAGCAAACGTTTTATAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>368</pcr_amplicon_size>
		<canonical_amplicon>GCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGCCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTAGTTATGGCATAGGCTTAGCTATATTTGTGGCATAGGCTTATCTATTTGTGGCATAGGCTTAAACACTATAAAACGTTTGCTTACC</canonical_amplicon>
		<polymorphic_amplicon>GCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATGGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGCCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTATTTATGGCATAGGCTTAGCTTTTTGTGGCATAGGCTTAGCTTTTTGTGGCATAGCTATTTGTGGCATAGGCTTAGCTATTTGCGGCATAGGCTTAGCTATTTGTGGCATAGGCTTAGCTATTTGTGGCATACGCTTAGCTATTTATGGCATAGGCTTAGCTAGTTATGGCATAGGCTTAGCTATATTTGTGGCATAGGCTTATCTATTTGTGGCATAGGCTTAAACACTATAAAACGTTTGCTTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24439</snp_id>
        <super_contig>c000700929.Contig1</super_contig>
        <contig_pos>24888</contig_pos>
        <strand>+</strand>
        <context>CTGAAAATCA[C/G]AACTTTTCAC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGGCGGCGAAGTCCCTGAGCAAAGTCCTTGTTTGTGCTACCTGAAAATCA</left_flank>
        <right_flank>AACTTTTCACTTGAAAAAGGATAAAAAGTGGAAATTATGACGAAGAGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCCAAGTCCATCGAATCCTGGAAACAGAGGTCTCCTGAAAGAAGTACCATTAACCCCAAAAATATTTACGGAACAATTTGAATACCTGGCAGTTGACAGTTGACGATCCTTCCTCTTGCCTTGATGACTCCGCTTCGAAGTTTTCCCGGCTGAAAAAAATCGATAATTATGCTTGAATTTTAGGAAAAATAGAAATTCAGGAGAAAAACTCATCTTTATCGATCGATGTTCAGCTTGCGGGACGATGATGAACACTGAAAATAGTACCATTAACCGGACATTTTTTTTCGGAACAATTTTCTTACCGGGAGAGACGATTTTCTCTTCAGAAATCCATTGTCTGAGCTTTCACTGTCCTTCCTCTCCATTTTTTCAGCTACCATCTCGATCTGAAATAACTTTTTATGCGGAGAAAATTCGAAGAAAAAATTCACCTTTGTTGAGAAGCGGCGGCGAAGTCCCTGAGCAAAGTCCTTGTTTGTGCTACCTGAAAATCAAAACTTTTCACTTGAAAAAGGATAAAAAGTGGAAATTATGACGAAGAGAGACATATTTGAAGGCATTTCTCGATAAATTACAGCACTATTACATTATAACACTAATATTTAGAGAGGAGACAGACGGAAAAAAAAAATGAAAAAGCCAATTTTCGACTGATTTTCGAAACATTTTAGGTGAAAAAAAGATCAAAAAAGATGAGAATTTACTGAAATTTGATTTTTTGAAAGTTTTTGTGTCTTTTGGCAAGAAATTAGCTTGAAAATTGGCTGAAAATTGGCTGAAAATAGAGAAAAATTAGCGATGGCCGAGAAAGTGGGAGTTTTCTCGGCCACCCCCCGGTGTAGTCCTCGTGGACAAGCAATTTGGTGTGTCGAAATCCGGCCGCGTGATACGCATTTTGCTCGCGAATGGTCAATTGTAGAACCTCTCGTTCGCGGTAGATAAGTAATTGGTCGATTATAGCCCTTCTTCTGTAATTGGTCAATCACGAATCACCT</canonical>
            <polymorphic>GATCCAAGTCCATCGAATCCTGGAAACAGAGGTCTCCTGAAAGAAGTACCATTAACCCCAAAAATATTTACGGAACAATTTGAATACCTGGCAGTTGACAGTTGACGATCCTTCCTCTTGCCTTGATGACTCCGCTTCGAAGTTTTCCCGGCTGAAAAAAATCGATAATTATGCTTGAATTTTAGGAAAAATAGAAATTCAGGAGAAAAACTCATCTTTATCGATCGATGTTCAGCTTGCGGGACGATGATGAACACTGAAAATAGTACCATTAACCGGACATTTTTTTTCGGAACAATTTTCTTACCGGGAGAGACGATTTTCTCTTCAGAAATCCATTGTCTGAGCTTTCACTGTCCTTCCTCTCCATTTTTTCAGCTACCATCTCGATCTGAAATAACTTTTTATGCGGAGAAAATTCGAAGAAAAAATTCACCTTTGTTGAGAAGCGGCGGCGAAGTCCCTGAGCAAAGTCCTTGTTTGTGCTACCTGAAAATCASAACTTTTCACTTGAAAAAGGATAAAAAGTGGAAATTATGACGAAGAGAGACATATTTGAAGGCATTTCTCGATAAATTACAGCACTATTACATTATAACACTAATATTTAGAGAGGAGACAGACGGAAAAAAAAAATGAAAAAGCCAATTTTCGACTGATTTTCGAAACATTTTAGGTGAAAAAAAGATCAAAAAAGATGAGAATTTACTGAAATTTGATTTTTTGAAAGTTTTTGTGTCTTTTGGCAAGAAATTAGCTTGAAAATTGGCTGAAAATTGGCTGAAAATAGAGAAAAATTAGCGATGGCCGAGAAAGTGGGAGTTTTCTCGGCCACCCCCCGGTGTAGTCCTCGTGGACAAGCAATTTGGTGTGTCGAAATCCGGCCGCGTGATACGCATTTTGCTCGCGAATGGTCAATTGTAGAACCTCTCGTTCGCGGTAGATAAGTAATTGGTCGATTATAGCCCTTCTTCTGTAATTGGTCAATCACGAATCACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTCACCTTTGTTGAGAAG</pcr_primer_p1>
		<pcr_primer_p2>CTAAAATGTTTCGAAAATCAGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAATTCACCTTTGTTGAGAAGCGGCGGCGAAGTCCCTGAGCAAAGTCCTTGTTTGTGCTACCTGAAAATCAAAACTTTTCACTTGAAAAAGGATAAAAAGTGGAAATTATGACGAAGAGAGACATATTTGAAGGCATTTCTCGATAAATTACAGCACTATTACATTATAACACTAATATTTAGAGAGGAGACAGACGGAAAAAAAAAATGAAAAAGCCAATTTTCGACTGATTTTCGAAACATTTTAG</canonical_amplicon>
		<polymorphic_amplicon>AAAATTCACCTTTGTTGAGAAGCGGCGGCGAAGTCCCTGAGCAAAGTCCTTGTTTGTGCTACCTGAAAATCASAACTTTTCACTTGAAAAAGGATAAAAAGTGGAAATTATGACGAAGAGAGACATATTTGAAGGCATTTCTCGATAAATTACAGCACTATTACATTATAACACTAATATTTAGAGAGGAGACAGACGGAAAAAAAAAATGAAAAAGCCAATTTTCGACTGATTTTCGAAACATTTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24440</snp_id>
        <super_contig>c000700929.Contig1</super_contig>
        <contig_pos>24929</contig_pos>
        <strand>+</strand>
        <context>GAAATTATGA[C/T]GAAGAGAGAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAAATCAAAACTTTTCACTTGAAAAAGGATAAAAAGTGGAAATTATGA</left_flank>
        <right_flank>GAAGAGAGACATATTTGAAGGCATTTCTCGATAAATTACAGCACTATTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAGTACCATTAACCCCAAAAATATTTACGGAACAATTTGAATACCTGGCAGTTGACAGTTGACGATCCTTCCTCTTGCCTTGATGACTCCGCTTCGAAGTTTTCCCGGCTGAAAAAAATCGATAATTATGCTTGAATTTTAGGAAAAATAGAAATTCAGGAGAAAAACTCATCTTTATCGATCGATGTTCAGCTTGCGGGACGATGATGAACACTGAAAATAGTACCATTAACCGGACATTTTTTTTCGGAACAATTTTCTTACCGGGAGAGACGATTTTCTCTTCAGAAATCCATTGTCTGAGCTTTCACTGTCCTTCCTCTCCATTTTTTCAGCTACCATCTCGATCTGAAATAACTTTTTATGCGGAGAAAATTCGAAGAAAAAATTCACCTTTGTTGAGAAGCGGCGGCGAAGTCCCTGAGCAAAGTCCTTGTTTGTGCTACCTGAAAATCAAAACTTTTCACTTGAAAAAGGATAAAAAGTGGAAATTATGACGAAGAGAGACATATTTGAAGGCATTTCTCGATAAATTACAGCACTATTACATTATAACACTAATATTTAGAGAGGAGACAGACGGAAAAAAAAAATGAAAAAGCCAATTTTCGACTGATTTTCGAAACATTTTAGGTGAAAAAAAGATCAAAAAAGATGAGAATTTACTGAAATTTGATTTTTTGAAAGTTTTTGTGTCTTTTGGCAAGAAATTAGCTTGAAAATTGGCTGAAAATTGGCTGAAAATAGAGAAAAATTAGCGATGGCCGAGAAAGTGGGAGTTTTCTCGGCCACCCCCCGGTGTAGTCCTCGTGGACAAGCAATTTGGTGTGTCGAAATCCGGCCGCGTGATACGCATTTTGCTCGCGAATGGTCAATTGTAGAACCTCTCGTTCGCGGTAGATAAGTAATTGGTCGATTATAGCCCTTCTTCTGTAATTGGTCAATCACGAATCACCTGTGACGTCGCCGCTGAAAACTACAGAACGCGAGGGCGTACA</canonical>
            <polymorphic>AGAAGTACCATTAACCCCAAAAATATTTACGGAACAATTTGAATACCTGGCAGTTGACAGTTGACGATCCTTCCTCTTGCCTTGATGACTCCGCTTCGAAGTTTTCCCGGCTGAAAAAAATCGATAATTATGCTTGAATTTTAGGAAAAATAGAAATTCAGGAGAAAAACTCATCTTTATCGATCGATGTTCAGCTTGCGGGACGATGATGAACACTGAAAATAGTACCATTAACCGGACATTTTTTTTCGGAACAATTTTCTTACCGGGAGAGACGATTTTCTCTTCAGAAATCCATTGTCTGAGCTTTCACTGTCCTTCCTCTCCATTTTTTCAGCTACCATCTCGATCTGAAATAACTTTTTATGCGGAGAAAATTCGAAGAAAAAATTCACCTTTGTTGAGAAGCGGCGGCGAAGTCCCTGAGCAAAGTCCTTGTTTGTGCTACCTGAAAATCAAAACTTTTCACTTGAAAAAGGATAAAAAGTGGAAATTATGAYGAAGAGAGACATATTTGAAGGCATTTCTCGATAAATTACAGCACTATTACATTATAACACTAATATTTAGAGAGGAGACAGACGGAAAAAAAAAATGAAAAAGCCAATTTTCGACTGATTTTCGAAACATTTTAGGTGAAAAAAAGATCAAAAAAGATGAGAATTTACTGAAATTTGATTTTTTGAAAGTTTTTGTGTCTTTTGGCAAGAAATTAGCTTGAAAATTGGCTGAAAATTGGCTGAAAATAGAGAAAAATTAGCGATGGCCGAGAAAGTGGGAGTTTTCTCGGCCACCCCCCGGTGTAGTCCTCGTGGACAAGCAATTTGGTGTGTCGAAATCCGGCCGCGTGATACGCATTTTGCTCGCGAATGGTCAATTGTAGAACCTCTCGTTCGCGGTAGATAAGTAATTGGTCGATTATAGCCCTTCTTCTGTAATTGGTCAATCACGAATCACCTGTGACGTCGCCGCTGAAAACTACAGAACGCGAGGGCGTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTCACCTTTGTTGAGAAG</pcr_primer_p1>
		<pcr_primer_p2>CTAAAATGTTTCGAAAATCAGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAATTCACCTTTGTTGAGAAGCGGCGGCGAAGTCCCTGAGCAAAGTCCTTGTTTGTGCTACCTGAAAATCAAAACTTTTCACTTGAAAAAGGATAAAAAGTGGAAATTATGACGAAGAGAGACATATTTGAAGGCATTTCTCGATAAATTACAGCACTATTACATTATAACACTAATATTTAGAGAGGAGACAGACGGAAAAAAAAAATGAAAAAGCCAATTTTCGACTGATTTTCGAAACATTTTAG</canonical_amplicon>
		<polymorphic_amplicon>AAAATTCACCTTTGTTGAGAAGCGGCGGCGAAGTCCCTGAGCAAAGTCCTTGTTTGTGCTACCTGAAAATCAAAACTTTTCACTTGAAAAAGGATAAAAAGTGGAAATTATGAYGAAGAGAGACATATTTGAAGGCATTTCTCGATAAATTACAGCACTATTACATTATAACACTAATATTTAGAGAGGAGACAGACGGAAAAAAAAAATGAAAAAGCCAATTTTCGACTGATTTTCGAAACATTTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24441</snp_id>
        <super_contig>c000700929.Contig1</super_contig>
        <contig_pos>24956</contig_pos>
        <strand>+</strand>
        <context>GAAGGCATTT[A/C]TCGATAAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGGATAAAAAGTGGAAATTATGACGAAGAGAGACATATTTGAAGGCATTT</left_flank>
        <right_flank>TCGATAAATTACAGCACTATTACATTATAACACTAATATTTAGAGAGGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACGGAACAATTTGAATACCTGGCAGTTGACAGTTGACGATCCTTCCTCTTGCCTTGATGACTCCGCTTCGAAGTTTTCCCGGCTGAAAAAAATCGATAATTATGCTTGAATTTTAGGAAAAATAGAAATTCAGGAGAAAAACTCATCTTTATCGATCGATGTTCAGCTTGCGGGACGATGATGAACACTGAAAATAGTACCATTAACCGGACATTTTTTTTCGGAACAATTTTCTTACCGGGAGAGACGATTTTCTCTTCAGAAATCCATTGTCTGAGCTTTCACTGTCCTTCCTCTCCATTTTTTCAGCTACCATCTCGATCTGAAATAACTTTTTATGCGGAGAAAATTCGAAGAAAAAATTCACCTTTGTTGAGAAGCGGCGGCGAAGTCCCTGAGCAAAGTCCTTGTTTGTGCTACCTGAAAATCAAAACTTTTCACTTGAAAAAGGATAAAAAGTGGAAATTATGACGAAGAGAGACATATTTGAAGGCATTTCTCGATAAATTACAGCACTATTACATTATAACACTAATATTTAGAGAGGAGACAGACGGAAAAAAAAAATGAAAAAGCCAATTTTCGACTGATTTTCGAAACATTTTAGGTGAAAAAAAGATCAAAAAAGATGAGAATTTACTGAAATTTGATTTTTTGAAAGTTTTTGTGTCTTTTGGCAAGAAATTAGCTTGAAAATTGGCTGAAAATTGGCTGAAAATAGAGAAAAATTAGCGATGGCCGAGAAAGTGGGAGTTTTCTCGGCCACCCCCCGGTGTAGTCCTCGTGGACAAGCAATTTGGTGTGTCGAAATCCGGCCGCGTGATACGCATTTTGCTCGCGAATGGTCAATTGTAGAACCTCTCGTTCGCGGTAGATAAGTAATTGGTCGATTATAGCCCTTCTTCTGTAATTGGTCAATCACGAATCACCTGTGACGTCGCCGCTGAAAACTACAGAACGCGAGGGCGTACAAGTGTGTGGTGTTCCCCGGAGTCTCCC</canonical>
            <polymorphic>TACGGAACAATTTGAATACCTGGCAGTTGACAGTTGACGATCCTTCCTCTTGCCTTGATGACTCCGCTTCGAAGTTTTCCCGGCTGAAAAAAATCGATAATTATGCTTGAATTTTAGGAAAAATAGAAATTCAGGAGAAAAACTCATCTTTATCGATCGATGTTCAGCTTGCGGGACGATGATGAACACTGAAAATAGTACCATTAACCGGACATTTTTTTTCGGAACAATTTTCTTACCGGGAGAGACGATTTTCTCTTCAGAAATCCATTGTCTGAGCTTTCACTGTCCTTCCTCTCCATTTTTTCAGCTACCATCTCGATCTGAAATAACTTTTTATGCGGAGAAAATTCGAAGAAAAAATTCACCTTTGTTGAGAAGCGGCGGCGAAGTCCCTGAGCAAAGTCCTTGTTTGTGCTACCTGAAAATCAAAACTTTTCACTTGAAAAAGGATAAAAAGTGGAAATTATGACGAAGAGAGACATATTTGAAGGCATTTMTCGATAAATTACAGCACTATTACATTATAACACTAATATTTAGAGAGGAGACAGACGGAAAAAAAAAATGAAAAAGCCAATTTTCGACTGATTTTCGAAACATTTTAGGTGAAAAAAAGATCAAAAAAGATGAGAATTTACTGAAATTTGATTTTTTGAAAGTTTTTGTGTCTTTTGGCAAGAAATTAGCTTGAAAATTGGCTGAAAATTGGCTGAAAATAGAGAAAAATTAGCGATGGCCGAGAAAGTGGGAGTTTTCTCGGCCACCCCCCGGTGTAGTCCTCGTGGACAAGCAATTTGGTGTGTCGAAATCCGGCCGCGTGATACGCATTTTGCTCGCGAATGGTCAATTGTAGAACCTCTCGTTCGCGGTAGATAAGTAATTGGTCGATTATAGCCCTTCTTCTGTAATTGGTCAATCACGAATCACCTGTGACGTCGCCGCTGAAAACTACAGAACGCGAGGGCGTACAAGTGTGTGGTGTTCCCCGGAGTCTCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>338 186 182 132 83 79</canonical_bands>
                <polymorphic_bands>520 186 132 83 79</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTCACCTTTGTTGAGAAG</pcr_primer_p1>
		<pcr_primer_p2>CTAAAATGTTTCGAAAATCAGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAATTCACCTTTGTTGAGAAGCGGCGGCGAAGTCCCTGAGCAAAGTCCTTGTTTGTGCTACCTGAAAATCAAAACTTTTCACTTGAAAAAGGATAAAAAGTGGAAATTATGACGAAGAGAGACATATTTGAAGGCATTTCTCGATAAATTACAGCACTATTACATTATAACACTAATATTTAGAGAGGAGACAGACGGAAAAAAAAAATGAAAAAGCCAATTTTCGACTGATTTTCGAAACATTTTAG</canonical_amplicon>
		<polymorphic_amplicon>AAAATTCACCTTTGTTGAGAAGCGGCGGCGAAGTCCCTGAGCAAAGTCCTTGTTTGTGCTACCTGAAAATCAAAACTTTTCACTTGAAAAAGGATAAAAAGTGGAAATTATGACGAAGAGAGACATATTTGAAGGCATTTMTCGATAAATTACAGCACTATTACATTATAACACTAATATTTAGAGAGGAGACAGACGGAAAAAAAAAATGAAAAAGCCAATTTTCGACTGATTTTCGAAACATTTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24442</snp_id>
        <super_contig>c000700929.Contig1</super_contig>
        <contig_pos>43700</contig_pos>
        <strand>+</strand>
        <context>ATACTTTTGT[C/G]TCAAAAAAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAATATTACCCACACTTTTTGGCGCGCCAATTGTAGAGAGATACTTTTGT</left_flank>
        <right_flank>TCAAAAAAGGGATTTGGCCACTAAAAGAGAACGATCAATGTTAGCGTTTC</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTCTCTCAATCTTCTATCCAAAATCAACGAAGAGCTCACAGACTCATTGACGTGTCACATTTGTGGAAAGAAGTTCGGACTACAACGTCTTCTGAATCGTCACATCAAGTGCCACAGTGATCTCAAAAGATATCTTTGCACATTTTGCGGTAAAGGTTTCAACGATACATTCGATCTAAAACGACACACAAGAACCCATACAGGTATGTATAAAAGAAAAGAAACAGAGGATACACTCAAAACTCACTTTAGAAAGTACTCTCTACCTACACTTTGCCTCTTATTTCTAATTTCCACCAATTCATAACCACTAATTTGTCGTTCTTCCATTTTTCTCACCCTCCGTTGACTTACGGTTGGAAGGAAGTTGTCTGCGTCTCCATTCCTACAACACTATTTTCTTATTCAAACCGTGTCATTGAAATGAATCCATTGTAGCGAGAGGCGTAATATTACCCACACTTTTTGGCGCGCCAATTGTAGAGAGATACTTTTGTGTCAAAAAAGGGATTTGGCCACTAAAAGAGAACGATCAATGTTAGCGTTTCATAATCTTATTTGCATAATGCTTGAGGATGATTAGCTAGTGTACTTTGATACTGTAAAACATGTAATACAAGGTCCCCCACACTGCCAAGTTTGATCTCATTTATTTCAATTCCTATGCAAGATATCAAAAACATGTCAGCTTACAAAACACTTCTGATATCATGATTAACAATTTATCAGTTCAAAACTTTTGCAGATCTTTGACAGGAGCGGAGAAAAAATGGCTCACAGTTAAAAGTTAGAGGGCCCTTCTATTACATGTTCAACGGTTTAACGAAATTCCAGGAGTCCGTCCTTACAAATGTGAACAGTGCGAGAAATCATTCACTCAACGATGTTCCCTGGAATCTCATCTTCGGAAAGTTCATGGTGTCACTCACCAATACGCCTACAAGGAACGTCGGAGCAAGGTATGTGTTCGATCTGTTTCGTTATAACAAAGTTCTGAA</canonical>
            <polymorphic>TCTTCTCTCAATCTTCTATCCAAAATCAACGAAGAGCTCACAGACTCATTGACGTGTCACATTTGTGGAAAGAAGTTCGGACTACAACGTCTTCTGAATCGTCACATCAAGTGCCACAGTGATCTCAAAAGATATCTTTGCACATTTTGCGGTAAAGGTTTCAACGATACATTCGATCTAAAACGACACACAAGAACCCATACAGGTATGTATAAAAGAAAAGAAACAGAGGATACACTCAAAACTCACTTTAGAAAGTACTCTCTACCTACACTTTGCCTCTTATTTCTAATTTCCACCAATTCATAACCACTAATTTGTCGTTCTTCCATTTTTCTCACCCTCCGTTGACTTACGGTTGGAAGGAAGTTGTCTGCGTCTCCATTCCTACAACACTATTTTCTTATTCAAACCGTGTCATTGAAATGAATCCATTGTAGCGAGAGGCGTAATATTACCCACACTTTTTGGCGCGCCAATTGTAGAGAGATACTTTTGTSTCAAAAAAGGGATTTGGCCACTAAAAGAGAACGATCAATGTTAGCGTTTCATAATCTTATTTGCATAATGCTTGAGGATGATTAGCTAGTGTACTTTGATACTGTAAAACATGTAATACAAGGTCCCCCACACTGCCAAGTTTGATCTCATTTATTTCAATTCCTATGCAAGATATCAAAAACATGTCAGCTTACAAAACACTTCTGATATCATGATTAACAATTTATCAGTTCAAAACTTTTGCAGATCTTTGACAGGAGCGGAGAAAAAATGGCTCACAGTTAAAAGTTAGAGGGCCCTTCTATTACATGTTCAACGGTTTAACGAAATTCCAGGAGTCCGTCCTTACAAATGTGAACAGTGCGAGAAATCATTCACTCAACGATGTTCCCTGGAATCTCATCTTCGGAAAGTTCATGGTGTCACTCACCAATACGCCTACAAGGAACGTCGGAGCAAGGTATGTGTTCGATCTGTTTCGTTATAACAAAGTTCTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>78 78 71 69 55 47 46 45 44 40 39 38 37 37 32 28 25 25 22 21 20 16 14 14 11 9 8 7 5 4 3 3 3 2 2 2</canonical_bands>
                <polymorphic_bands>78 78 71 69 57 55 47 46 45 44 40 39 38 37 32 28 25 25 22 21 16 14 14 11 9 8 7 5 4 3 3 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTAATTTGTCGTTCTTCCATTT</pcr_primer_p1>
		<pcr_primer_p2>AAGATTATGAAACGCTAACATTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTAATTTGTCGTTCTTCCATTTTTCTCACCCTCCGTTGACTTACGGTTGGAAGGAAGTTGTCTGCGTCTCCATTCCTACAACACTATTTTCTTATTCAAACCGTGTCATTGAAATGAATCCATTGTAGCGAGAGGCGTAATATTACCCACACTTTTTGGCGCGCCAATTGTAGAGAGATACTTTTGTGTCAAAAAAGGGATTTGGCCACTAAAAGAGAACGATCAATGTTAGCGTTTCATAATCTT</canonical_amplicon>
		<polymorphic_amplicon>ACTAATTTGTCGTTCTTCCATTTTTCTCACCCTCCGTTGACTTACGGTTGGAAGGAAGTTGTCTGCGTCTCCATTCCTACAACACTATTTTCTTATTCAAACCGTGTCATTGAAATGAATCCATTGTAGCGAGAGGCGTAATATTACCCACACTTTTTGGCGCGCCAATTGTAGAGAGATACTTTTGTSTCAAAAAAGGGATTTGGCCACTAAAAGAGAACGATCAATGTTAGCGTTTCATAATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24443</snp_id>
        <super_contig>c000800832.Contig2</super_contig>
        <contig_pos>36826</contig_pos>
        <strand></strand>
        <context>ggggaagaga[G/A]agagagagag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAAAAAAAGAGGTAAAAAGGAATAAAAATGAAGGAGAGATGGGGAAGAGA</left_flank>
        <right_flank>AGAGAGAGAGATCACTTACATAAATCATCATAAAGAGAGATTGAGAGAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATGACTATTCGTTTCCTCGTCTTCCTGGAAAACGAATTTTCCGTCTGAACGAACAGGAGTGNNNCCNNNNNNGNNNNGNNNTNNNNCNGNNNNGNNNNNNNATNNGNNNNGNTNNNNNCNNNNNNNNNNCNNNNNNNCNTNNCCNNNNNTGNNTCTCTCCCCACAGCTACGTTTTTGAACCAGAATAATACTTTTATTGTTATCCTATAAAGGATAAGTCTAGATAGAAAAATTATCTGAAATTCTCTCTCCTCAAATCATTAGTTCTTCCCGATGAATCTCAACCTACAATTTCTGGAATTAATGTGCTCATCTGACGTCGTCGGCGACTCATCCGAGTCGTAATCATATGCTTGCATCATCTCTGAAACAATTAAATTGATTTTCAGAAAAAAGTACAGGTTTTGATCTGCTACCAATCGTGCGGAAACGATGACAAAGTGGTGGAAAAAAAGAGGTAAAAAGGAATAAAAATGAAGGAGAGATGGGGAAGAGAGAGAGAGAGAGATCACTTACATAAATCATCATAAAGAGAGATTGAGAGAATCAGAGAAGATCCCAATCGGCAAAAAATATTGGAAAAAATAAAGTGGTGGGAGCGAGAGTGATCCAACTAGTTTCCAATCCAAATTATGTGTTCTTTCACTAGGTAAATCTCACAGAACAACATTGAACATGAACAAATAACGTAAAACCTGTAATAGAAAGGCCCCAAACGCTGCCAATTTAGAGCTCAATTATCGTTTCTATGCAAGTTAACAAGAATATGTCAACTGACAAAACACTTCTGATGCTATGATAAACCGGGAACTAAGAAAAATTGGCTCACATGGAATGACTCTCAAGTGTTGCCCTCGAAAAAAATCGAGACGTATATGGTTAAAAAGAGCGTAAAAAGTTATCCAAGAATCTTAAGAGGAATAGTTGATAAAAATTTTTTGGGGAGTTATGGTCCAAAAAGTACCAAAAAATGGCTATATTATCAAAAAATCATAAC</canonical>
            <polymorphic>TTTATGACTATTCGTTTCCTCGTCTTCCTGGAAAACGAATTTTCCGTCTGAACGAACAGGAGTGNNNCCNNNNNNGNNNNGNNNTNNNNCNGNNNNGNNNNNNNATNNGNNNNGNTNNNNNCNNNNNNNNNNCNNNNNNNCNTNNCCNNNNNTGNNTCTCTCCCCACAGCTACGTTTTTGAACCAGAATAATACTTTTATTGTTATCCTATAAAGGATAAGTCTAGATAGAAAAATTATCTGAAATTCTCTCTCCTCAAATCATTAGTTCTTCCCGATGAATCTCAACCTACAATTTCTGGAATTAATGTGCTCATCTGACGTCGTCGGCGACTCATCCGAGTCGTAATCATATGCTTGCATCATCTCTGAAACAATTAAATTGATTTTCAGAAAAAAGTACAGGTTTTGATCTGCTACCAATCGTGCGGAAACGATGACAAAGTGGTGGAAAAAAAGAGGTAAAAAGGAATAAAAATGAAGGAGAGATGGGGAAGAGARAGAGAGAGAGATCACTTACATAAATCATCATAAAGAGAGATTGAGAGAATCAGAGAAGATCCCAATCGGCAAAAAATATTGGAAAAAATAAAGTGGTGGGAGCGAGAGTGATCCAACTAGTTTCCAATCCAAATTATGTGTTCTTTCACTAGGTAAATCTCACAGAACAACATTGAACATGAACAAATAACGTAAAACCTGTAATAGAAAGGCCCCAAACGCTGCCAATTTAGAGCTCAATTATCGTTTCTATGCAAGTTAACAAGAATATGTCAACTGACAAAACACTTCTGATGCTATGATAAACCGGGAACTAAGAAAAATTGGCTCACATGGAATGACTCTCAAGTGTTGCCCTCGAAAAAAATCGAGACGTATATGGTTAAAAAGAGCGTAAAAAGTTATCCAAGAATCTTAAGAGGAATAGTTGATAAAAATTTTTTGGGGAGTTATGGTCCAAAAAGTACCAAAAAATGGCTATATTATCAAAAAATCATAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGTACAGGTTTTGATCTGCTA</pcr_primer_p1>
		<pcr_primer_p2>GAAAGAACACATAATTTGGATTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAAGTACAGGTTTTGATCTGCTACCAATCGTGCGGAAACGATGACAAAGTGGTGGAAAAAAAGAGGTAAAAAGGAATAAAAATGAAGGAGAGATGGGGAAGAGAGAGAGAGAGAGATCACTTACATAAATCATCATAAAGAGAGATTGAGAGAATCAGAGAAGATCCCAATCGGCAAAAAATATTGGAAAAAATAAAGTGGTGGGAGCGAGAGTGATCCAACTAGTTTCCAATCCAAATTATGTGTTCTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAGTACAGGTTTTGATCTGCTACCAATCGTGCGGAAACGATGACAAAGTGGTGGAAAAAAAGAGGTAAAAAGGAATAAAAATGAAGGAGAGATGGGGAAGAGARAGAGAGAGAGATCACTTACATAAATCATCATAAAGAGAGATTGAGAGAATCAGAGAAGATCCCAATCGGCAAAAAATATTGGAAAAAATAAAGTGGTGGGAGCGAGAGTGATCCAACTAGTTTCCAATCCAAATTATGTGTTCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24444</snp_id>
        <super_contig>c000800832.Contig2</super_contig>
        <contig_pos>38358</contig_pos>
        <strand></strand>
        <context>ncaccctctc[T/C]yctctctctc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCAATTAACTTCTCTCTCTCTCTCTCTCTCTCTNNNNNNNNCACCCTCTC</left_flank>
        <right_flank>CCTCTCTCTCTCTCTTCTCTCTCTCTCTTCTTTGTTTCGAAAAAAAGTAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCCTTGATTTGCATAAGGAATGGACGACAAAAAGAAGATGTCAATTCAATCTTGTTTAAGAGCTCTGTGAGTAGTGGATAGAAAGCAATAAGGGGTTCTCTGCTCAACCGGAAAATCGGTTACTTGATTTTTTGTGCTGAGAATACTGAGGTTTCTGAACCTGGAGAAACGTATGAGAGCAGATGATAGTAGGTACAAAGAAGAAAAAACAGGTGAATTGGTCCGTGGAGCAATGGAAGGCATTGAGTACATCAATTTTCAACTTCTTCGGAATGGAGTTCCTAGATTAAAACCTTCGACGTTATAGACTCAAACGTTTTTCTGTTCGAAAGATTCGGGCAAGCTGTTTCAGGAATCGGGACGCTGTGAGTGGCCTGAAATTCATTTGGGCCGCGATCTCTTACCAAGCCTTTTGGAAGTCTGTGCGGATTCTGGTCGAATTCTATTCTCAATTAACTTCTCTCTCTCTCTCTCTCTCTCTNNNNNNNNCACCCTCTCTCCTCTCTCTCTCTCTTCTCTCTCTCTCTTCTTTGTTTCGAAAAAAAGTAAGATGAGAACTTTGGAAATATTTACATTCGTTTTAGTTTTTTGGGATTCAATTGAAAGTTTCAAAAAAAGTATCACAAGAGCACAGAGAGAAAACCAAAATCTTTTTGAAAAAGAAGAAGAAAGCCAATGGGAGGAGGAAGAATGTGTTCGAAAGTGACTATGAGAAAATGGAAGCAAGATGAAAGAATGATGGAGAAAAAGATATAAAGATAAGAGATCAAATTGAAGAAACTTGAAGAGATGGGGAAAGTGTGTGAGAATGTGAAGAATGGAATGTTCTGGAAAAAAAATTTGAAAAAGATGAAAACTTGTTAATCGAAGTTTCGTTCAGCGGAAATAAAGTATTGAGAGACAACGGAAACTGAAAAATAAACGAGAGGAAGTTTTCAATTATCTCAAATACTTTTTAATTGAATTCCAGAAAAAATTCCATTTTTCTGGAAAGAGTTT</canonical>
            <polymorphic>TGCCTTGATTTGCATAAGGAATGGACGACAAAAAGAAGATGTCAATTCAATCTTGTTTAAGAGCTCTGTGAGTAGTGGATAGAAAGCAATAAGGGGTTCTCTGCTCAACCGGAAAATCGGTTACTTGATTTTTTGTGCTGAGAATACTGAGGTTTCTGAACCTGGAGAAACGTATGAGAGCAGATGATAGTAGGTACAAAGAAGAAAAAACAGGTGAATTGGTCCGTGGAGCAATGGAAGGCATTGAGTACATCAATTTTCAACTTCTTCGGAATGGAGTTCCTAGATTAAAACCTTCGACGTTATAGACTCAAACGTTTTTCTGTTCGAAAGATTCGGGCAAGCTGTTTCAGGAATCGGGACGCTGTGAGTGGCCTGAAATTCATTTGGGCCGCGATCTCTTACCAAGCCTTTTGGAAGTCTGTGCGGATTCTGGTCGAATTCTATTCTCAATTAACTTCTCTCTCTCTCTCTCTCTCTCTNNNNNNNNCACCCTCTCYCCTCTCTCTCTCTCTTCTCTCTCTCTCTTCTTTGTTTCGAAAAAAAGTAAGATGAGAACTTTGGAAATATTTACATTCGTTTTAGTTTTTTGGGATTCAATTGAAAGTTTCAAAAAAAGTATCACAAGAGCACAGAGAGAAAACCAAAATCTTTTTGAAAAAGAAGAAGAAAGCCAATGGGAGGAGGAAGAATGTGTTCGAAAGTGACTATGAGAAAATGGAAGCAAGATGAAAGAATGATGGAGAAAAAGATATAAAGATAAGAGATCAAATTGAAGAAACTTGAAGAGATGGGGAAAGTGTGTGAGAATGTGAAGAATGGAATGTTCTGGAAAAAAAATTTGAAAAAGATGAAAACTTGTTAATCGAAGTTTCGTTCAGCGGAAATAAAGTATTGAGAGACAACGGAAACTGAAAAATAAACGAGAGGAAGTTTTCAATTATCTCAAATACTTTTTAATTGAATTCCAGAAAAAATTCCATTTTTCTGGAAAGAGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTCTGGTCGAATTCTATTCTC</pcr_primer_p1>
		<pcr_primer_p2>ATTGGCTTTCTTCTTCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATTCTGGTCGAATTCTATTCTCAATTAACTTCTCTCTCTCTCTCTCTCTCTCTNNNNNNNNCACCCTCTCTCCTCTCTCTCTCTCTTCTCTCTCTCTCTTCTTTGTTTCGAAAAAAAGTAAGATGAGAACTTTGGAAATATTTACATTCGTTTTAGTTTTTTGGGATTCAATTGAAAGTTTCAAAAAAAGTATCACAAGAGCACAGAGAGAAAACCAAAATCTTTTTGAAAAAGAAGAAGAAAGCCAAT</canonical_amplicon>
		<polymorphic_amplicon>GATTCTGGTCGAATTCTATTCTCAATTAACTTCTCTCTCTCTCTCTCTCTCTCTNNNNNNNNCACCCTCTCYCCTCTCTCTCTCTCTTCTCTCTCTCTCTTCTTTGTTTCGAAAAAAAGTAAGATGAGAACTTTGGAAATATTTACATTCGTTTTAGTTTTTTGGGATTCAATTGAAAGTTTCAAAAAAAGTATCACAAGAGCACAGAGAGAAAACCAAAATCTTTTTGAAAAAGAAGAAGAAAGCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24445</snp_id>
        <super_contig>c000800832.Contig2</super_contig>
        <contig_pos>38359</contig_pos>
        <strand></strand>
        <context>caccctctcy[C/T]ctctctctct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATTAACTTCTCTCTCTCTCTCTCTCTCTCTNNNNNNNNCACCCTCTCT</left_flank>
        <right_flank>CTCTCTCTCTCTCTTCTCTCTCTCTCTTCTTTGTTTCGAAAAAAAGTAAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCTTGATTTGCATAAGGAATGGACGACAAAAAGAAGATGTCAATTCAATCTTGTTTAAGAGCTCTGTGAGTAGTGGATAGAAAGCAATAAGGGGTTCTCTGCTCAACCGGAAAATCGGTTACTTGATTTTTTGTGCTGAGAATACTGAGGTTTCTGAACCTGGAGAAACGTATGAGAGCAGATGATAGTAGGTACAAAGAAGAAAAAACAGGTGAATTGGTCCGTGGAGCAATGGAAGGCATTGAGTACATCAATTTTCAACTTCTTCGGAATGGAGTTCCTAGATTAAAACCTTCGACGTTATAGACTCAAACGTTTTTCTGTTCGAAAGATTCGGGCAAGCTGTTTCAGGAATCGGGACGCTGTGAGTGGCCTGAAATTCATTTGGGCCGCGATCTCTTACCAAGCCTTTTGGAAGTCTGTGCGGATTCTGGTCGAATTCTATTCTCAATTAACTTCTCTCTCTCTCTCTCTCTCTCTNNNNNNNNCACCCTCTCTCCTCTCTCTCTCTCTTCTCTCTCTCTCTTCTTTGTTTCGAAAAAAAGTAAGATGAGAACTTTGGAAATATTTACATTCGTTTTAGTTTTTTGGGATTCAATTGAAAGTTTCAAAAAAAGTATCACAAGAGCACAGAGAGAAAACCAAAATCTTTTTGAAAAAGAAGAAGAAAGCCAATGGGAGGAGGAAGAATGTGTTCGAAAGTGACTATGAGAAAATGGAAGCAAGATGAAAGAATGATGGAGAAAAAGATATAAAGATAAGAGATCAAATTGAAGAAACTTGAAGAGATGGGGAAAGTGTGTGAGAATGTGAAGAATGGAATGTTCTGGAAAAAAAATTTGAAAAAGATGAAAACTTGTTAATCGAAGTTTCGTTCAGCGGAAATAAAGTATTGAGAGACAACGGAAACTGAAAAATAAACGAGAGGAAGTTTTCAATTATCTCAAATACTTTTTAATTGAATTCCAGAAAAAATTCCATTTTTCTGGAAAGAGTTTG</canonical>
            <polymorphic>GCCTTGATTTGCATAAGGAATGGACGACAAAAAGAAGATGTCAATTCAATCTTGTTTAAGAGCTCTGTGAGTAGTGGATAGAAAGCAATAAGGGGTTCTCTGCTCAACCGGAAAATCGGTTACTTGATTTTTTGTGCTGAGAATACTGAGGTTTCTGAACCTGGAGAAACGTATGAGAGCAGATGATAGTAGGTACAAAGAAGAAAAAACAGGTGAATTGGTCCGTGGAGCAATGGAAGGCATTGAGTACATCAATTTTCAACTTCTTCGGAATGGAGTTCCTAGATTAAAACCTTCGACGTTATAGACTCAAACGTTTTTCTGTTCGAAAGATTCGGGCAAGCTGTTTCAGGAATCGGGACGCTGTGAGTGGCCTGAAATTCATTTGGGCCGCGATCTCTTACCAAGCCTTTTGGAAGTCTGTGCGGATTCTGGTCGAATTCTATTCTCAATTAACTTCTCTCTCTCTCTCTCTCTCTCTNNNNNNNNCACCCTCTCTYCTCTCTCTCTCTCTTCTCTCTCTCTCTTCTTTGTTTCGAAAAAAAGTAAGATGAGAACTTTGGAAATATTTACATTCGTTTTAGTTTTTTGGGATTCAATTGAAAGTTTCAAAAAAAGTATCACAAGAGCACAGAGAGAAAACCAAAATCTTTTTGAAAAAGAAGAAGAAAGCCAATGGGAGGAGGAAGAATGTGTTCGAAAGTGACTATGAGAAAATGGAAGCAAGATGAAAGAATGATGGAGAAAAAGATATAAAGATAAGAGATCAAATTGAAGAAACTTGAAGAGATGGGGAAAGTGTGTGAGAATGTGAAGAATGGAATGTTCTGGAAAAAAAATTTGAAAAAGATGAAAACTTGTTAATCGAAGTTTCGTTCAGCGGAAATAAAGTATTGAGAGACAACGGAAACTGAAAAATAAACGAGAGGAAGTTTTCAATTATCTCAAATACTTTTTAATTGAATTCCAGAAAAAATTCCATTTTTCTGGAAAGAGTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTCTGGTCGAATTCTATTCTC</pcr_primer_p1>
		<pcr_primer_p2>ATTGGCTTTCTTCTTCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATTCTGGTCGAATTCTATTCTCAATTAACTTCTCTCTCTCTCTCTCTCTCTCTNNNNNNNNCACCCTCTCTCCTCTCTCTCTCTCTTCTCTCTCTCTCTTCTTTGTTTCGAAAAAAAGTAAGATGAGAACTTTGGAAATATTTACATTCGTTTTAGTTTTTTGGGATTCAATTGAAAGTTTCAAAAAAAGTATCACAAGAGCACAGAGAGAAAACCAAAATCTTTTTGAAAAAGAAGAAGAAAGCCAAT</canonical_amplicon>
		<polymorphic_amplicon>GATTCTGGTCGAATTCTATTCTCAATTAACTTCTCTCTCTCTCTCTCTCTCTCTNNNNNNNNCACCCTCTCTYCTCTCTCTCTCTCTTCTCTCTCTCTCTTCTTTGTTTCGAAAAAAAGTAAGATGAGAACTTTGGAAATATTTACATTCGTTTTAGTTTTTTGGGATTCAATTGAAAGTTTCAAAAAAAGTATCACAAGAGCACAGAGAGAAAACCAAAATCTTTTTGAAAAAGAAGAAGAAAGCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24446</snp_id>
        <super_contig>c000800832.Contig2</super_contig>
        <contig_pos>38374</contig_pos>
        <strand></strand>
        <context>ctctctctct[T/C]ctctctctct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCTCTCTCTCTCTCTCTNNNNNNNNCACCCTCTCTCCTCTCTCTCTCTCT</left_flank>
        <right_flank>CTCTCTCTCTCTTCTTTGTTTCGAAAAAAAGTAAGATGAGAACTTTGGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGAATGGACGACAAAAAGAAGATGTCAATTCAATCTTGTTTAAGAGCTCTGTGAGTAGTGGATAGAAAGCAATAAGGGGTTCTCTGCTCAACCGGAAAATCGGTTACTTGATTTTTTGTGCTGAGAATACTGAGGTTTCTGAACCTGGAGAAACGTATGAGAGCAGATGATAGTAGGTACAAAGAAGAAAAAACAGGTGAATTGGTCCGTGGAGCAATGGAAGGCATTGAGTACATCAATTTTCAACTTCTTCGGAATGGAGTTCCTAGATTAAAACCTTCGACGTTATAGACTCAAACGTTTTTCTGTTCGAAAGATTCGGGCAAGCTGTTTCAGGAATCGGGACGCTGTGAGTGGCCTGAAATTCATTTGGGCCGCGATCTCTTACCAAGCCTTTTGGAAGTCTGTGCGGATTCTGGTCGAATTCTATTCTCAATTAACTTCTCTCTCTCTCTCTCTCTCTCTNNNNNNNNCACCCTCTCTCCTCTCTCTCTCTCTTCTCTCTCTCTCTTCTTTGTTTCGAAAAAAAGTAAGATGAGAACTTTGGAAATATTTACATTCGTTTTAGTTTTTTGGGATTCAATTGAAAGTTTCAAAAAAAGTATCACAAGAGCACAGAGAGAAAACCAAAATCTTTTTGAAAAAGAAGAAGAAAGCCAATGGGAGGAGGAAGAATGTGTTCGAAAGTGACTATGAGAAAATGGAAGCAAGATGAAAGAATGATGGAGAAAAAGATATAAAGATAAGAGATCAAATTGAAGAAACTTGAAGAGATGGGGAAAGTGTGTGAGAATGTGAAGAATGGAATGTTCTGGAAAAAAAATTTGAAAAAGATGAAAACTTGTTAATCGAAGTTTCGTTCAGCGGAAATAAAGTATTGAGAGACAACGGAAACTGAAAAATAAACGAGAGGAAGTTTTCAATTATCTCAAATACTTTTTAATTGAATTCCAGAAAAAATTCCATTTTTCTGGAAAGAGTTTGGCGAAGTATGATAAA</canonical>
            <polymorphic>AGGAATGGACGACAAAAAGAAGATGTCAATTCAATCTTGTTTAAGAGCTCTGTGAGTAGTGGATAGAAAGCAATAAGGGGTTCTCTGCTCAACCGGAAAATCGGTTACTTGATTTTTTGTGCTGAGAATACTGAGGTTTCTGAACCTGGAGAAACGTATGAGAGCAGATGATAGTAGGTACAAAGAAGAAAAAACAGGTGAATTGGTCCGTGGAGCAATGGAAGGCATTGAGTACATCAATTTTCAACTTCTTCGGAATGGAGTTCCTAGATTAAAACCTTCGACGTTATAGACTCAAACGTTTTTCTGTTCGAAAGATTCGGGCAAGCTGTTTCAGGAATCGGGACGCTGTGAGTGGCCTGAAATTCATTTGGGCCGCGATCTCTTACCAAGCCTTTTGGAAGTCTGTGCGGATTCTGGTCGAATTCTATTCTCAATTAACTTCTCTCTCTCTCTCTCTCTCTCTNNNNNNNNCACCCTCTCTCCTCTCTCTCTCTCTYCTCTCTCTCTCTTCTTTGTTTCGAAAAAAAGTAAGATGAGAACTTTGGAAATATTTACATTCGTTTTAGTTTTTTGGGATTCAATTGAAAGTTTCAAAAAAAGTATCACAAGAGCACAGAGAGAAAACCAAAATCTTTTTGAAAAAGAAGAAGAAAGCCAATGGGAGGAGGAAGAATGTGTTCGAAAGTGACTATGAGAAAATGGAAGCAAGATGAAAGAATGATGGAGAAAAAGATATAAAGATAAGAGATCAAATTGAAGAAACTTGAAGAGATGGGGAAAGTGTGTGAGAATGTGAAGAATGGAATGTTCTGGAAAAAAAATTTGAAAAAGATGAAAACTTGTTAATCGAAGTTTCGTTCAGCGGAAATAAAGTATTGAGAGACAACGGAAACTGAAAAATAAACGAGAGGAAGTTTTCAATTATCTCAAATACTTTTTAATTGAATTCCAGAAAAAATTCCATTTTTCTGGAAAGAGTTTGGCGAAGTATGATAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTCTGGTCGAATTCTATTCTC</pcr_primer_p1>
		<pcr_primer_p2>ATTGGCTTTCTTCTTCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATTCTGGTCGAATTCTATTCTCAATTAACTTCTCTCTCTCTCTCTCTCTCTCTNNNNNNNNCACCCTCTCTCCTCTCTCTCTCTCTTCTCTCTCTCTCTTCTTTGTTTCGAAAAAAAGTAAGATGAGAACTTTGGAAATATTTACATTCGTTTTAGTTTTTTGGGATTCAATTGAAAGTTTCAAAAAAAGTATCACAAGAGCACAGAGAGAAAACCAAAATCTTTTTGAAAAAGAAGAAGAAAGCCAAT</canonical_amplicon>
		<polymorphic_amplicon>GATTCTGGTCGAATTCTATTCTCAATTAACTTCTCTCTCTCTCTCTCTCTCTCTNNNNNNNNCACCCTCTCTCCTCTCTCTCTCTCTYCTCTCTCTCTCTTCTTTGTTTCGAAAAAAAGTAAGATGAGAACTTTGGAAATATTTACATTCGTTTTAGTTTTTTGGGATTCAATTGAAAGTTTCAAAAAAAGTATCACAAGAGCACAGAGAGAAAACCAAAATCTTTTTGAAAAAGAAGAAGAAAGCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24447</snp_id>
        <super_contig>c000800832.Contig2</super_contig>
        <contig_pos>81844</contig_pos>
        <strand>+</strand>
        <context>AAAGAAAAAG[A/T]ATTTCCATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGACGCCTTCTTTGGAGGAGCAGAGAAACTAGATGAAATAAAAGAAAAAG</left_flank>
        <right_flank>ATTTCCATTTTTTTTTGTTAGAAGGTGTGGTGAAAAACAGAGGATCCGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTCACAAAGTAGTGTCTATAAAAATATAATGGTACAAATGTATTAAAGGAAAAGAGTTACTTTGAAATTGGTTTATAAGCAACACCAAGTTTCAAAAAGCCGTCCTCGTAGTTTAAAAGTTTGAGTTTGTCGACGAGTTCCTCGTTCTGAAAACAAAACTAAACAGTAAGAAGATGTACTCAGATGAGAAAAAAATGTGAAGGTTCAGTACAATTTCACACTCACCCGAATATATACTTCATACTCTTTTCCTGGTCCATCTTCGGCTACTTCCAACCCATTCGTTGATTCTGTTTGATGACCATTTGATTGGTCATCTTCTAGACCATCTTCCATTTTATTAGTGGAACAAAAGAACCAGTTGCGAATAAGTGTCAGAGAAAATCGAAGCGGAAGTGTGTTTCCTCGGTTGTCAAGGAAACGTCTCTCGCAAACGGGGTTGAGCAGGACGCCTTCTTTGGAGGAGCAGAGAAACTAGATGAAATAAAAGAAAAAGAATTTCCATTTTTTTTTGTTAGAAGGTGTGGTGAAAAACAGAGGATCCGTAGCCGGTCGTCATCACAATAAGGTATTTGTTGTGTAAAGTATTATTTTTCAGAACCTTCTCTTTCGCTTTGGAAAACTTTTATATAACTGCTCAGAAGAGCATGGCACTACGGCTCCAAAATTAATCAGCTCCGTGCGGTCATCAAGTCCTCAAGGACTGCTTCACGCTCGCGCCATGCTCGTCTCCCTTTCATCGCAGTTGGCATCTCTACCAATTTGATGGGAATTACGAGATACATACTGCAGAAATGATTCTGTATAGTATGGTCTCAATGAAAGCAGCGCGGCCGCTGAACCTAACCACGCGCAGCAGCCGACACTTCCCGGGTTCCGCCAGCCACTATACTTTGTGTGTGCCTTGGCTCCGCCCACAACTTCCTTTCTCTGCGTCTCTAGGGTAGAGGGGAATGATGAGAAACTGCACAAAAGAACCTGTACTGGGTTATTTGTG</canonical>
            <polymorphic>GATTTCACAAAGTAGTGTCTATAAAAATATAATGGTACAAATGTATTAAAGGAAAAGAGTTACTTTGAAATTGGTTTATAAGCAACACCAAGTTTCAAAAAGCCGTCCTCGTAGTTTAAAAGTTTGAGTTTGTCGACGAGTTCCTCGTTCTGAAAACAAAACTAAACAGTAAGAAGATGTACTCAGATGAGAAAAAAATGTGAAGGTTCAGTACAATTTCACACTCACCCGAATATATACTTCATACTCTTTTCCTGGTCCATCTTCGGCTACTTCCAACCCATTCGTTGATTCTGTTTGATGACCATTTGATTGGTCATCTTCTAGACCATCTTCCATTTTATTAGTGGAACAAAAGAACCAGTTGCGAATAAGTGTCAGAGAAAATCGAAGCGGAAGTGTGTTTCCTCGGTTGTCAAGGAAACGTCTCTCGCAAACGGGGTTGAGCAGGACGCCTTCTTTGGAGGAGCAGAGAAACTAGATGAAATAAAAGAAAAAGWATTTCCATTTTTTTTTGTTAGAAGGTGTGGTGAAAAACAGAGGATCCGTAGCCGGTCGTCATCACAATAAGGTATTTGTTGTGTAAAGTATTATTTTTCAGAACCTTCTCTTTCGCTTTGGAAAACTTTTATATAACTGCTCAGAAGAGCATGGCACTACGGCTCCAAAATTAATCAGCTCCGTGCGGTCATCAAGTCCTCAAGGACTGCTTCACGCTCGCGCCATGCTCGTCTCCCTTTCATCGCAGTTGGCATCTCTACCAATTTGATGGGAATTACGAGATACATACTGCAGAAATGATTCTGTATAGTATGGTCTCAATGAAAGCAGCGCGGCCGCTGAACCTAACCACGCGCAGCAGCCGACACTTCCCGGGTTCCGCCAGCCACTATACTTTGTGTGTGCCTTGGCTCCGCCCACAACTTCCTTTCTCTGCGTCTCTAGGGTAGAGGGGAATGATGAGAAACTGCACAAAAGAACCTGTACTGGGTTATTTGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>285 227 169 146 94 68 11</canonical_bands>
                <polymorphic_bands>454 227 146 94 68 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCCATTTTATTAGTGGAACAA</pcr_primer_p1>
		<pcr_primer_p2>CAACAAATACCTTATTGTGATGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTCCATTTTATTAGTGGAACAAAAGAACCAGTTGCGAATAAGTGTCAGAGAAAATCGAAGCGGAAGTGTGTTTCCTCGGTTGTCAAGGAAACGTCTCTCGCAAACGGGGTTGAGCAGGACGCCTTCTTTGGAGGAGCAGAGAAACTAGATGAAATAAAAGAAAAAGAATTTCCATTTTTTTTTGTTAGAAGGTGTGGTGAAAAACAGAGGATCCGTAGCCGGTCGTCATCACAATAAGGTATTTGTTG</canonical_amplicon>
		<polymorphic_amplicon>CTTCCATTTTATTAGTGGAACAAAAGAACCAGTTGCGAATAAGTGTCAGAGAAAATCGAAGCGGAAGTGTGTTTCCTCGGTTGTCAAGGAAACGTCTCTCGCAAACGGGGTTGAGCAGGACGCCTTCTTTGGAGGAGCAGAGAAACTAGATGAAATAAAAGAAAAAGWATTTCCATTTTTTTTTGTTAGAAGGTGTGGTGAAAAACAGAGGATCCGTAGCCGGTCGTCATCACAATAAGGTATTTGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24448</snp_id>
        <super_contig>c000800832.Contig2</super_contig>
        <contig_pos>81855</contig_pos>
        <strand>+</strand>
        <context>ATTTCCATTT[A/T]TTTTTGTTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGGAGGAGCAGAGAAACTAGATGAAATAAAAGAAAAAGAATTTCCATTT</left_flank>
        <right_flank>TTTTTGTTAGAAGGTGTGGTGAAAAACAGAGGATCCGTAGCCGGTCGTCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAGTGTCTATAAAAATATAATGGTACAAATGTATTAAAGGAAAAGAGTTACTTTGAAATTGGTTTATAAGCAACACCAAGTTTCAAAAAGCCGTCCTCGTAGTTTAAAAGTTTGAGTTTGTCGACGAGTTCCTCGTTCTGAAAACAAAACTAAACAGTAAGAAGATGTACTCAGATGAGAAAAAAATGTGAAGGTTCAGTACAATTTCACACTCACCCGAATATATACTTCATACTCTTTTCCTGGTCCATCTTCGGCTACTTCCAACCCATTCGTTGATTCTGTTTGATGACCATTTGATTGGTCATCTTCTAGACCATCTTCCATTTTATTAGTGGAACAAAAGAACCAGTTGCGAATAAGTGTCAGAGAAAATCGAAGCGGAAGTGTGTTTCCTCGGTTGTCAAGGAAACGTCTCTCGCAAACGGGGTTGAGCAGGACGCCTTCTTTGGAGGAGCAGAGAAACTAGATGAAATAAAAGAAAAAGAATTTCCATTTTTTTTTGTTAGAAGGTGTGGTGAAAAACAGAGGATCCGTAGCCGGTCGTCATCACAATAAGGTATTTGTTGTGTAAAGTATTATTTTTCAGAACCTTCTCTTTCGCTTTGGAAAACTTTTATATAACTGCTCAGAAGAGCATGGCACTACGGCTCCAAAATTAATCAGCTCCGTGCGGTCATCAAGTCCTCAAGGACTGCTTCACGCTCGCGCCATGCTCGTCTCCCTTTCATCGCAGTTGGCATCTCTACCAATTTGATGGGAATTACGAGATACATACTGCAGAAATGATTCTGTATAGTATGGTCTCAATGAAAGCAGCGCGGCCGCTGAACCTAACCACGCGCAGCAGCCGACACTTCCCGGGTTCCGCCAGCCACTATACTTTGTGTGTGCCTTGGCTCCGCCCACAACTTCCTTTCTCTGCGTCTCTAGGGTAGAGGGGAATGATGAGAAACTGCACAAAAGAACCTGTACTGGGTTATTTGTGGTACATTGCTG</canonical>
            <polymorphic>GTAGTGTCTATAAAAATATAATGGTACAAATGTATTAAAGGAAAAGAGTTACTTTGAAATTGGTTTATAAGCAACACCAAGTTTCAAAAAGCCGTCCTCGTAGTTTAAAAGTTTGAGTTTGTCGACGAGTTCCTCGTTCTGAAAACAAAACTAAACAGTAAGAAGATGTACTCAGATGAGAAAAAAATGTGAAGGTTCAGTACAATTTCACACTCACCCGAATATATACTTCATACTCTTTTCCTGGTCCATCTTCGGCTACTTCCAACCCATTCGTTGATTCTGTTTGATGACCATTTGATTGGTCATCTTCTAGACCATCTTCCATTTTATTAGTGGAACAAAAGAACCAGTTGCGAATAAGTGTCAGAGAAAATCGAAGCGGAAGTGTGTTTCCTCGGTTGTCAAGGAAACGTCTCTCGCAAACGGGGTTGAGCAGGACGCCTTCTTTGGAGGAGCAGAGAAACTAGATGAAATAAAAGAAAAAGAATTTCCATTTWTTTTTGTTAGAAGGTGTGGTGAAAAACAGAGGATCCGTAGCCGGTCGTCATCACAATAAGGTATTTGTTGTGTAAAGTATTATTTTTCAGAACCTTCTCTTTCGCTTTGGAAAACTTTTATATAACTGCTCAGAAGAGCATGGCACTACGGCTCCAAAATTAATCAGCTCCGTGCGGTCATCAAGTCCTCAAGGACTGCTTCACGCTCGCGCCATGCTCGTCTCCCTTTCATCGCAGTTGGCATCTCTACCAATTTGATGGGAATTACGAGATACATACTGCAGAAATGATTCTGTATAGTATGGTCTCAATGAAAGCAGCGCGGCCGCTGAACCTAACCACGCGCAGCAGCCGACACTTCCCGGGTTCCGCCAGCCACTATACTTTGTGTGTGCCTTGGCTCCGCCCACAACTTCCTTTCTCTGCGTCTCTAGGGTAGAGGGGAATGATGAGAAACTGCACAAAAGAACCTGTACTGGGTTATTTGTGGTACATTGCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCCATTTTATTAGTGGAACAA</pcr_primer_p1>
		<pcr_primer_p2>CAACAAATACCTTATTGTGATGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTCCATTTTATTAGTGGAACAAAAGAACCAGTTGCGAATAAGTGTCAGAGAAAATCGAAGCGGAAGTGTGTTTCCTCGGTTGTCAAGGAAACGTCTCTCGCAAACGGGGTTGAGCAGGACGCCTTCTTTGGAGGAGCAGAGAAACTAGATGAAATAAAAGAAAAAGAATTTCCATTTTTTTTTGTTAGAAGGTGTGGTGAAAAACAGAGGATCCGTAGCCGGTCGTCATCACAATAAGGTATTTGTTG</canonical_amplicon>
		<polymorphic_amplicon>CTTCCATTTTATTAGTGGAACAAAAGAACCAGTTGCGAATAAGTGTCAGAGAAAATCGAAGCGGAAGTGTGTTTCCTCGGTTGTCAAGGAAACGTCTCTCGCAAACGGGGTTGAGCAGGACGCCTTCTTTGGAGGAGCAGAGAAACTAGATGAAATAAAAGAAAAAGAATTTCCATTTWTTTTTGTTAGAAGGTGTGGTGAAAAACAGAGGATCCGTAGCCGGTCGTCATCACAATAAGGTATTTGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24449</snp_id>
        <super_contig>c000800832.Contig2</super_contig>
        <contig_pos>100751</contig_pos>
        <strand>+</strand>
        <context>GGTTATGATT[C/T]GACATCAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACTGATGAGATATCGTGCGACGGAAACAAAGAACGGGCGGGTTATGATT</left_flank>
        <right_flank>GACATCAAATGGAAATACACTCTTAAAATGTGAATGTGGATTTAGTTCGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACTGCAAAAAATGCAAGTATCGCACTTCAGTTCGTCTTTACCTGTATGATCACTTCATCGAGAAACACATCAATGAGTGAGTTGGAACTATTCATTTTTCTATTCAACTTCACCATTTCAGTGCTCTTATATGTCCTCTCTGCCTGTACCAAGAAGATCTCAAGACTACCGTTCGGCACAGCAAGCATATTTTTGTCCCATCTTTTGTGGATCACATGCGAAAACATGCAGCAAACACATCATTCCGGTGTCGCATGTGTGCTCTTTCTTTCAGTGAACGTAAAGAACTCGATGCACATCGTATCAATGATCACACTCGCCTGAACAATCTGTGGGCAGTCACCGAACGACCAGATATCTGCAAAGGGCGCAGGGAACGTATTATAAGACGTCCAAAAGTAAATGGAATCGAAAAAAAGTTTCTGAAAACCACTGAAGGTCGTCGTGTAACTGATGAGATATCGTGCGACGGAAACAAAGAACGGGCGGGTTATGATTCGACATCAAATGGAAATACACTCTTAAAATGTGAATGTGGATTTAGTTCGTGGAATGGAAATAGGATGGCTTCACACCTTCATAGATGCCAAAAATCTATAAAAAGCGTCGAGCGCCACAGGGAAGGTGCTCGGAATGGAAACGATCCTGCAGAAGAATTAGAAATGTTTGCTGTTATTCCACAACCTACATCCACGGAAATTGAAACTAAGGTTAGTATAAAAATTAAAGTTTTTTTTCAATTTTGTTTGTTTTGCAGGCATTGGAGGAAGAGAATCTGCGAAAACTACATTTGGAAAAAGAAACTCCGAATAAAATCCGGACGAACGATATTTTTTTTGAGCCAATCGACGATTTGATTTTGCTGTAAGCTTCTGATAATGACTCGACTCTTCAAAACCTTTTTTGCAGGAAATTGTTGGCTAATGATAACAAAGATAACGGTACTCAAATTATCAATGCCTGCATTTTGAGCATCTTGGAATGTGAGATGAACTAACA</canonical>
            <polymorphic>CACTGCAAAAAATGCAAGTATCGCACTTCAGTTCGTCTTTACCTGTATGATCACTTCATCGAGAAACACATCAATGAGTGAGTTGGAACTATTCATTTTTCTATTCAACTTCACCATTTCAGTGCTCTTATATGTCCTCTCTGCCTGTACCAAGAAGATCTCAAGACTACCGTTCGGCACAGCAAGCATATTTTTGTCCCATCTTTTGTGGATCACATGCGAAAACATGCAGCAAACACATCATTCCGGTGTCGCATGTGTGCTCTTTCTTTCAGTGAACGTAAAGAACTCGATGCACATCGTATCAATGATCACACTCGCCTGAACAATCTGTGGGCAGTCACCGAACGACCAGATATCTGCAAAGGGCGCAGGGAACGTATTATAAGACGTCCAAAAGTAAATGGAATCGAAAAAAAGTTTCTGAAAACCACTGAAGGTCGTCGTGTAACTGATGAGATATCGTGCGACGGAAACAAAGAACGGGCGGGTTATGATTYGACATCAAATGGAAATACACTCTTAAAATGTGAATGTGGATTTAGTTCGTGGAATGGAAATAGGATGGCTTCACACCTTCATAGATGCCAAAAATCTATAAAAAGCGTCGAGCGCCACAGGGAAGGTGCTCGGAATGGAAACGATCCTGCAGAAGAATTAGAAATGTTTGCTGTTATTCCACAACCTACATCCACGGAAATTGAAACTAAGGTTAGTATAAAAATTAAAGTTTTTTTTCAATTTTGTTTGTTTTGCAGGCATTGGAGGAAGAGAATCTGCGAAAACTACATTTGGAAAAAGAAACTCCGAATAAAATCCGGACGAACGATATTTTTTTTGAGCCAATCGACGATTTGATTTTGCTGTAAGCTTCTGATAATGACTCGACTCTTCAAAACCTTTTTTGCAGGAAATTGTTGGCTAATGATAACAAAGATAACGGTACTCAAATTATCAATGCCTGCATTTTGAGCATCTTGGAATGTGAGATGAACTAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>239 231 120 114 109 89 60 38</canonical_bands>
                <polymorphic_bands>239 231 198 120 114 60 38</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>407 277 113 109 89 5</canonical_bands>
                <polymorphic_bands>407 366 113 109 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>407 277 227 89</canonical_bands>
                <polymorphic_bands>407 366 227</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTGAAGGTCGTCGTGTAAC</pcr_primer_p1>
		<pcr_primer_p2>GGAATAACAGCAAACATTTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACTGAAGGTCGTCGTGTAACTGATGAGATATCGTGCGACGGAAACAAAGAACGGGCGGGTTATGATTCGACATCAAATGGAAATACACTCTTAAAATGTGAATGTGGATTTAGTTCGTGGAATGGAAATAGGATGGCTTCACACCTTCATAGATGCCAAAAATCTATAAAAAGCGTCGAGCGCCACAGGGAAGGTGCTCGGAATGGAAACGATCCTGCAGAAGAATTAGAAATGTTTGCTGTTATTCC</canonical_amplicon>
		<polymorphic_amplicon>ACTGAAGGTCGTCGTGTAACTGATGAGATATCGTGCGACGGAAACAAAGAACGGGCGGGTTATGATTYGACATCAAATGGAAATACACTCTTAAAATGTGAATGTGGATTTAGTTCGTGGAATGGAAATAGGATGGCTTCACACCTTCATAGATGCCAAAAATCTATAAAAAGCGTCGAGCGCCACAGGGAAGGTGCTCGGAATGGAAACGATCCTGCAGAAGAATTAGAAATGTTTGCTGTTATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24450</snp_id>
        <super_contig>c000800832.Contig2</super_contig>
        <contig_pos>100858</contig_pos>
        <strand>+</strand>
        <context>TATAAAAAGC[A/G]TCGAGCGCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAATAGGATGGCTTCACACCTTCATAGATGCCAAAAATCTATAAAAAGC</left_flank>
        <right_flank>TCGAGCGCCACAGGGAAGGTGCTCGGAATGGAAACGATCCTGCAGAAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTCACCATTTCAGTGCTCTTATATGTCCTCTCTGCCTGTACCAAGAAGATCTCAAGACTACCGTTCGGCACAGCAAGCATATTTTTGTCCCATCTTTTGTGGATCACATGCGAAAACATGCAGCAAACACATCATTCCGGTGTCGCATGTGTGCTCTTTCTTTCAGTGAACGTAAAGAACTCGATGCACATCGTATCAATGATCACACTCGCCTGAACAATCTGTGGGCAGTCACCGAACGACCAGATATCTGCAAAGGGCGCAGGGAACGTATTATAAGACGTCCAAAAGTAAATGGAATCGAAAAAAAGTTTCTGAAAACCACTGAAGGTCGTCGTGTAACTGATGAGATATCGTGCGACGGAAACAAAGAACGGGCGGGTTATGATTCGACATCAAATGGAAATACACTCTTAAAATGTGAATGTGGATTTAGTTCGTGGAATGGAAATAGGATGGCTTCACACCTTCATAGATGCCAAAAATCTATAAAAAGCGTCGAGCGCCACAGGGAAGGTGCTCGGAATGGAAACGATCCTGCAGAAGAATTAGAAATGTTTGCTGTTATTCCACAACCTACATCCACGGAAATTGAAACTAAGGTTAGTATAAAAATTAAAGTTTTTTTTCAATTTTGTTTGTTTTGCAGGCATTGGAGGAAGAGAATCTGCGAAAACTACATTTGGAAAAAGAAACTCCGAATAAAATCCGGACGAACGATATTTTTTTTGAGCCAATCGACGATTTGATTTTGCTGTAAGCTTCTGATAATGACTCGACTCTTCAAAACCTTTTTTGCAGGAAATTGTTGGCTAATGATAACAAAGATAACGGTACTCAAATTATCAATGCCTGCATTTTGAGCATCTTGGAATGTGAGATGAACTAACAATCATCTTCAACTCAATTTCGTTACCAGCTTTTTTCTGATTTTATTTGTTCCCAAATTTCATTGTTTAGGCTTTCATTCTAAAAGTAATACTTCTCTTTTAATTTGT</canonical>
            <polymorphic>ACTTCACCATTTCAGTGCTCTTATATGTCCTCTCTGCCTGTACCAAGAAGATCTCAAGACTACCGTTCGGCACAGCAAGCATATTTTTGTCCCATCTTTTGTGGATCACATGCGAAAACATGCAGCAAACACATCATTCCGGTGTCGCATGTGTGCTCTTTCTTTCAGTGAACGTAAAGAACTCGATGCACATCGTATCAATGATCACACTCGCCTGAACAATCTGTGGGCAGTCACCGAACGACCAGATATCTGCAAAGGGCGCAGGGAACGTATTATAAGACGTCCAAAAGTAAATGGAATCGAAAAAAAGTTTCTGAAAACCACTGAAGGTCGTCGTGTAACTGATGAGATATCGTGCGACGGAAACAAAGAACGGGCGGGTTATGATTCGACATCAAATGGAAATACACTCTTAAAATGTGAATGTGGATTTAGTTCGTGGAATGGAAATAGGATGGCTTCACACCTTCATAGATGCCAAAAATCTATAAAAAGCRTCGAGCGCCACAGGGAAGGTGCTCGGAATGGAAACGATCCTGCAGAAGAATTAGAAATGTTTGCTGTTATTCCACAACCTACATCCACGGAAATTGAAACTAAGGTTAGTATAAAAATTAAAGTTTTTTTTCAATTTTGTTTGTTTTGCAGGCATTGGAGGAAGAGAATCTGCGAAAACTACATTTGGAAAAAGAAACTCCGAATAAAATCCGGACGAACGATATTTTTTTTGAGCCAATCGACGATTTGATTTTGCTGTAAGCTTCTGATAATGACTCGACTCTTCAAAACCTTTTTTGCAGGAAATTGTTGGCTAATGATAACAAAGATAACGGTACTCAAATTATCAATGCCTGCATTTTGAGCATCTTGGAATGTGAGATGAACTAACAATCATCTTCAACTCAATTTCGTTACCAGCTTTTTTCTGATTTTATTTGTTCCCAAATTTCATTGTTTAGGCTTTCATTCTAAAAGTAATACTTCTCTTTTAATTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>339 255 242 138 26</canonical_bands>
                <polymorphic_bands>380 339 255 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGTTCGTGGAATGGAAATAG</pcr_primer_p1>
		<pcr_primer_p2>ATGTAGTTTTCGCAGATTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAGTTCGTGGAATGGAAATAGGATGGCTTCACACCTTCATAGATGCCAAAAATCTATAAAAAGCGTCGAGCGCCACAGGGAAGGTGCTCGGAATGGAAACGATCCTGCAGAAGAATTAGAAATGTTTGCTGTTATTCCACAACCTACATCCACGGAAATTGAAACTAAGGTTAGTATAAAAATTAAAGTTTTTTTTCAATTTTGTTTGTTTTGCAGGCATTGGAGGAAGAGAATCTGCGAAAACTACAT</canonical_amplicon>
		<polymorphic_amplicon>TTAGTTCGTGGAATGGAAATAGGATGGCTTCACACCTTCATAGATGCCAAAAATCTATAAAAAGCRTCGAGCGCCACAGGGAAGGTGCTCGGAATGGAAACGATCCTGCAGAAGAATTAGAAATGTTTGCTGTTATTCCACAACCTACATCCACGGAAATTGAAACTAAGGTTAGTATAAAAATTAAAGTTTTTTTTCAATTTTGTTTGTTTTGCAGGCATTGGAGGAAGAGAATCTGCGAAAACTACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24451</snp_id>
        <super_contig>c000800839.Contig2</super_contig>
        <contig_pos>1946</contig_pos>
        <strand>+</strand>
        <context>CGATTCTTCC[G/T]GTGGATTTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATTGACCATTCAACCGGAATTTCAAGACAGATTGTCATCGATTCTTCC</left_flank>
        <right_flank>GTGGATTTCGTGAGAAATTGGGAAAAGTTAGTTTTTCATGCAAATCTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTAAGCTTGAATTTTAGAATGTTTTAATTTTGGAAGTTCTGATAAGATATGCCAAAAATTCAAAAATTCAAAAATCCAAAATTCCAAAATTTCCAGTACTACTTCAATGACAAAAATTCGGGATGGGGTGACAAACCAAGAAATTGGGATCGCATTTCAGAAATTATGACCTATTCGAAAAAGCAAATTGCAAATTTGGCATATCCAGTTGAGTCAGGTAATTAAAAAAATTGTCAAAAAAATTGTTTTTTAATATTTTTATTTTCAGAATCCATGTACAATGCGATGGCTGCAAATCGTCTGGATAATTTGACTGGGGTTGTGGTCGGGTCCATGCAACCATGGGTGGAAGTTTATGCTCTGAAAAATGGTAATTTTTGAAAAAAATTTTTTTTTTTGAAAATTTTAATTTTCAGGCGCCAAAAAAATTCTGACAGTGGAATACAACAAATTGACCATTCAACCGGAATTTCAAGACAGATTGTCATCGATTCTTCCGGTGGATTTCGTGAGAAATTGGGAAAAGTTAGTTTTTCATGCAAATCTGAAAATTTGGAATACTGAGATTTTCAGATACGCTGGAACTTTTGATTTTGCCGCATCATTTTCATCAATTGAACATTCTGGATTGGGTAGATATGGAGATCCGATGGATCCTATTGGAGATTTGAGAGAGATGCTCAAAATTAAGTGTATGCTGAAACCGGGAGGTAGAAGTTTTTGAAATTTTTGAATTTTTGAATTTTTGAATGTTTGAATTTTTGAATTTTTGAATTTTCAAATTTTTGAATTTTCGAATTTTCGAATTTTCGAATTTTTGAATTTTTGAATTTTCGAATTTTTGAATTTTTGAAATTTTTGAAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTTTTGAAATTTTTGAATTTTCGAATTTTTGAATTTTTGAATTTTCGAATTTTTGAATTTTTGAAATTTTTGAAATTTTTGAATTTTTGAATTTTTGAATGTT</canonical>
            <polymorphic>CCTAAGCTTGAATTTTAGAATGTTTTAATTTTGGAAGTTCTGATAAGATATGCCAAAAATTCAAAAATTCAAAAATCCAAAATTCCAAAATTTCCAGTACTACTTCAATGACAAAAATTCGGGATGGGGTGACAAACCAAGAAATTGGGATCGCATTTCAGAAATTATGACCTATTCGAAAAAGCAAATTGCAAATTTGGCATATCCAGTTGAGTCAGGTAATTAAAAAAATTGTCAAAAAAATTGTTTTTTAATATTTTTATTTTCAGAATCCATGTACAATGCGATGGCTGCAAATCGTCTGGATAATTTGACTGGGGTTGTGGTCGGGTCCATGCAACCATGGGTGGAAGTTTATGCTCTGAAAAATGGTAATTTTTGAAAAAAATTTTTTTTTTTGAAAATTTTAATTTTCAGGCGCCAAAAAAATTCTGACAGTGGAATACAACAAATTGACCATTCAACCGGAATTTCAAGACAGATTGTCATCGATTCTTCCKGTGGATTTCGTGAGAAATTGGGAAAAGTTAGTTTTTCATGCAAATCTGAAAATTTGGAATACTGAGATTTTCAGATACGCTGGAACTTTTGATTTTGCCGCATCATTTTCATCAATTGAACATTCTGGATTGGGTAGATATGGAGATCCGATGGATCCTATTGGAGATTTGAGAGAGATGCTCAAAATTAAGTGTATGCTGAAACCGGGAGGTAGAAGTTTTTGAAATTTTTGAATTTTTGAATTTTTGAATGTTTGAATTTTTGAATTTTTGAATTTTCAAATTTTTGAATTTTCGAATTTTCGAATTTTCGAATTTTTGAATTTTTGAATTTTCGAATTTTTGAATTTTTGAAATTTTTGAAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTTTTGAAATTTTTGAATTTTCGAATTTTTGAATTTTTGAATTTTCGAATTTTTGAATTTTTGAAATTTTTGAAATTTTTGAATTTTTGAATTTTTGAATGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>503 464 33</canonical_bands>
                <polymorphic_bands>536 464</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>465 295 207 33</canonical_bands>
                <polymorphic_bands>465 295 240</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACAACAAATTGACCATTCAAC</pcr_primer_p1>
		<pcr_primer_p2>CTTAATTTTGAGCATCTCTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATACAACAAATTGACCATTCAACCGGAATTTCAAGACAGATTGTCATCGATTCTTCCGGTGGATTTCGTGAGAAATTGGGAAAAGTTAGTTTTTCATGCAAATCTGAAAATTTGGAATACTGAGATTTTCAGATACGCTGGAACTTTTGATTTTGCCGCATCATTTTCATCAATTGAACATTCTGGATTGGGTAGATATGGAGATCCGATGGATCCTATTGGAGATTTGAGAGAGATGCTCAAAATTAAG</canonical_amplicon>
		<polymorphic_amplicon>ATACAACAAATTGACCATTCAACCGGAATTTCAAGACAGATTGTCATCGATTCTTCCKGTGGATTTCGTGAGAAATTGGGAAAAGTTAGTTTTTCATGCAAATCTGAAAATTTGGAATACTGAGATTTTCAGATACGCTGGAACTTTTGATTTTGCCGCATCATTTTCATCAATTGAACATTCTGGATTGGGTAGATATGGAGATCCGATGGATCCTATTGGAGATTTGAGAGAGATGCTCAAAATTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24452</snp_id>
        <super_contig>c000800839.Contig2</super_contig>
        <contig_pos>1985</contig_pos>
        <strand>+</strand>
        <context>TAGTTTTTCA[A/T]RCAAATCTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGATTCTTCCGGTGGATTTCGTGAGAAATTGGGAAAAGTTAGTTTTTCA</left_flank>
        <right_flank>GCAAATCTGAAAATTTGGAATACTGAGATTTTCAGATACGCTGGAACTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGATAAGATATGCCAAAAATTCAAAAATTCAAAAATCCAAAATTCCAAAATTTCCAGTACTACTTCAATGACAAAAATTCGGGATGGGGTGACAAACCAAGAAATTGGGATCGCATTTCAGAAATTATGACCTATTCGAAAAAGCAAATTGCAAATTTGGCATATCCAGTTGAGTCAGGTAATTAAAAAAATTGTCAAAAAAATTGTTTTTTAATATTTTTATTTTCAGAATCCATGTACAATGCGATGGCTGCAAATCGTCTGGATAATTTGACTGGGGTTGTGGTCGGGTCCATGCAACCATGGGTGGAAGTTTATGCTCTGAAAAATGGTAATTTTTGAAAAAAATTTTTTTTTTTGAAAATTTTAATTTTCAGGCGCCAAAAAAATTCTGACAGTGGAATACAACAAATTGACCATTCAACCGGAATTTCAAGACAGATTGTCATCGATTCTTCCGGTGGATTTCGTGAGAAATTGGGAAAAGTTAGTTTTTCATGCAAATCTGAAAATTTGGAATACTGAGATTTTCAGATACGCTGGAACTTTTGATTTTGCCGCATCATTTTCATCAATTGAACATTCTGGATTGGGTAGATATGGAGATCCGATGGATCCTATTGGAGATTTGAGAGAGATGCTCAAAATTAAGTGTATGCTGAAACCGGGAGGTAGAAGTTTTTGAAATTTTTGAATTTTTGAATTTTTGAATGTTTGAATTTTTGAATTTTTGAATTTTCAAATTTTTGAATTTTCGAATTTTCGAATTTTCGAATTTTTGAATTTTTGAATTTTCGAATTTTTGAATTTTTGAAATTTTTGAAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTTTTGAAATTTTTGAATTTTCGAATTTTTGAATTTTTGAATTTTCGAATTTTTGAATTTTTGAAATTTTTGAAATTTTTGAATTTTTGAATTTTTGAATGTTTGAATTTTTGAATTTTTGAATNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>CTGATAAGATATGCCAAAAATTCAAAAATTCAAAAATCCAAAATTCCAAAATTTCCAGTACTACTTCAATGACAAAAATTCGGGATGGGGTGACAAACCAAGAAATTGGGATCGCATTTCAGAAATTATGACCTATTCGAAAAAGCAAATTGCAAATTTGGCATATCCAGTTGAGTCAGGTAATTAAAAAAATTGTCAAAAAAATTGTTTTTTAATATTTTTATTTTCAGAATCCATGTACAATGCGATGGCTGCAAATCGTCTGGATAATTTGACTGGGGTTGTGGTCGGGTCCATGCAACCATGGGTGGAAGTTTATGCTCTGAAAAATGGTAATTTTTGAAAAAAATTTTTTTTTTTGAAAATTTTAATTTTCAGGCGCCAAAAAAATTCTGACAGTGGAATACAACAAATTGACCATTCAACCGGAATTTCAAGACAGATTGTCATCGATTCTTCCGGTGGATTTCGTGAGAAATTGGGAAAAGTTAGTTTTTCAWGCAAATCTGAAAATTTGGAATACTGAGATTTTCAGATACGCTGGAACTTTTGATTTTGCCGCATCATTTTCATCAATTGAACATTCTGGATTGGGTAGATATGGAGATCCGATGGATCCTATTGGAGATTTGAGAGAGATGCTCAAAATTAAGTGTATGCTGAAACCGGGAGGTAGAAGTTTTTGAAATTTTTGAATTTTTGAATTTTTGAATGTTTGAATTTTTGAATTTTTGAATTTTCAAATTTTTGAATTTTCGAATTTTCGAATTTTCGAATTTTTGAATTTTTGAATTTTCGAATTTTTGAATTTTTGAAATTTTTGAAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTTTTGAAATTTTTGAATTTTCGAATTTTTGAATTTTTGAATTTTCGAATTTTTGAATTTTTGAAATTTTTGAAATTTTTGAATTTTTGAATTTTTGAATGTTTGAATTTTTGAATTTTTGAATNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 235 195 60 8</canonical_bands>
                <polymorphic_bands>697 235 60 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>499 203 152 102 44</canonical_bands>
                <polymorphic_bands>702 152 102 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACAACAAATTGACCATTCAAC</pcr_primer_p1>
		<pcr_primer_p2>CTTAATTTTGAGCATCTCTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATACAACAAATTGACCATTCAACCGGAATTTCAAGACAGATTGTCATCGATTCTTCCGGTGGATTTCGTGAGAAATTGGGAAAAGTTAGTTTTTCATGCAAATCTGAAAATTTGGAATACTGAGATTTTCAGATACGCTGGAACTTTTGATTTTGCCGCATCATTTTCATCAATTGAACATTCTGGATTGGGTAGATATGGAGATCCGATGGATCCTATTGGAGATTTGAGAGAGATGCTCAAAATTAAG</canonical_amplicon>
		<polymorphic_amplicon>ATACAACAAATTGACCATTCAACCGGAATTTCAAGACAGATTGTCATCGATTCTTCCGGTGGATTTCGTGAGAAATTGGGAAAAGTTAGTTTTTCAWGCAAATCTGAAAATTTGGAATACTGAGATTTTCAGATACGCTGGAACTTTTGATTTTGCCGCATCATTTTCATCAATTGAACATTCTGGATTGGGTAGATATGGAGATCCGATGGATCCTATTGGAGATTTGAGAGAGATGCTCAAAATTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24453</snp_id>
        <super_contig>c000800839.Contig2</super_contig>
        <contig_pos>1986</contig_pos>
        <strand>+</strand>
        <context>AGTTTTTCAW[A/G]CAAATCTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGATTCTTCCGGTGGATTTCGTGAGAAATTGGGAAAAGTTAGTTTTTCAT</left_flank>
        <right_flank>CAAATCTGAAAATTTGGAATACTGAGATTTTCAGATACGCTGGAACTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATAAGATATGCCAAAAATTCAAAAATTCAAAAATCCAAAATTCCAAAATTTCCAGTACTACTTCAATGACAAAAATTCGGGATGGGGTGACAAACCAAGAAATTGGGATCGCATTTCAGAAATTATGACCTATTCGAAAAAGCAAATTGCAAATTTGGCATATCCAGTTGAGTCAGGTAATTAAAAAAATTGTCAAAAAAATTGTTTTTTAATATTTTTATTTTCAGAATCCATGTACAATGCGATGGCTGCAAATCGTCTGGATAATTTGACTGGGGTTGTGGTCGGGTCCATGCAACCATGGGTGGAAGTTTATGCTCTGAAAAATGGTAATTTTTGAAAAAAATTTTTTTTTTTGAAAATTTTAATTTTCAGGCGCCAAAAAAATTCTGACAGTGGAATACAACAAATTGACCATTCAACCGGAATTTCAAGACAGATTGTCATCGATTCTTCCGGTGGATTTCGTGAGAAATTGGGAAAAGTTAGTTTTTCATGCAAATCTGAAAATTTGGAATACTGAGATTTTCAGATACGCTGGAACTTTTGATTTTGCCGCATCATTTTCATCAATTGAACATTCTGGATTGGGTAGATATGGAGATCCGATGGATCCTATTGGAGATTTGAGAGAGATGCTCAAAATTAAGTGTATGCTGAAACCGGGAGGTAGAAGTTTTTGAAATTTTTGAATTTTTGAATTTTTGAATGTTTGAATTTTTGAATTTTTGAATTTTCAAATTTTTGAATTTTCGAATTTTCGAATTTTCGAATTTTTGAATTTTTGAATTTTCGAATTTTTGAATTTTTGAAATTTTTGAAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTTTTGAAATTTTTGAATTTTCGAATTTTTGAATTTTTGAATTTTCGAATTTTTGAATTTTTGAAATTTTTGAAATTTTTGAATTTTTGAATTTTTGAATGTTTGAATTTTTGAATTTTTGAATNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>TGATAAGATATGCCAAAAATTCAAAAATTCAAAAATCCAAAATTCCAAAATTTCCAGTACTACTTCAATGACAAAAATTCGGGATGGGGTGACAAACCAAGAAATTGGGATCGCATTTCAGAAATTATGACCTATTCGAAAAAGCAAATTGCAAATTTGGCATATCCAGTTGAGTCAGGTAATTAAAAAAATTGTCAAAAAAATTGTTTTTTAATATTTTTATTTTCAGAATCCATGTACAATGCGATGGCTGCAAATCGTCTGGATAATTTGACTGGGGTTGTGGTCGGGTCCATGCAACCATGGGTGGAAGTTTATGCTCTGAAAAATGGTAATTTTTGAAAAAAATTTTTTTTTTTGAAAATTTTAATTTTCAGGCGCCAAAAAAATTCTGACAGTGGAATACAACAAATTGACCATTCAACCGGAATTTCAAGACAGATTGTCATCGATTCTTCCGGTGGATTTCGTGAGAAATTGGGAAAAGTTAGTTTTTCATRCAAATCTGAAAATTTGGAATACTGAGATTTTCAGATACGCTGGAACTTTTGATTTTGCCGCATCATTTTCATCAATTGAACATTCTGGATTGGGTAGATATGGAGATCCGATGGATCCTATTGGAGATTTGAGAGAGATGCTCAAAATTAAGTGTATGCTGAAACCGGGAGGTAGAAGTTTTTGAAATTTTTGAATTTTTGAATTTTTGAATGTTTGAATTTTTGAATTTTTGAATTTTCAAATTTTTGAATTTTCGAATTTTCGAATTTTCGAATTTTTGAATTTTTGAATTTTCGAATTTTTGAATTTTTGAAATTTTTGAAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTTTTGAAATTTTTGAATTTTCGAATTTTTGAATTTTTGAATTTTCGAATTTTTGAATTTTTGAAATTTTTGAAATTTTTGAATTTTTGAATTTTTGAATGTTTGAATTTTTGAATTTTTGAATNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 234 195 60 8</canonical_bands>
                <polymorphic_bands>698 234 60 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 203 151 102 44</canonical_bands>
                <polymorphic_bands>703 151 102 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACAACAAATTGACCATTCAAC</pcr_primer_p1>
		<pcr_primer_p2>CTTAATTTTGAGCATCTCTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATACAACAAATTGACCATTCAACCGGAATTTCAAGACAGATTGTCATCGATTCTTCCGGTGGATTTCGTGAGAAATTGGGAAAAGTTAGTTTTTCATGCAAATCTGAAAATTTGGAATACTGAGATTTTCAGATACGCTGGAACTTTTGATTTTGCCGCATCATTTTCATCAATTGAACATTCTGGATTGGGTAGATATGGAGATCCGATGGATCCTATTGGAGATTTGAGAGAGATGCTCAAAATTAAG</canonical_amplicon>
		<polymorphic_amplicon>ATACAACAAATTGACCATTCAACCGGAATTTCAAGACAGATTGTCATCGATTCTTCCGGTGGATTTCGTGAGAAATTGGGAAAAGTTAGTTTTTCATRCAAATCTGAAAATTTGGAATACTGAGATTTTCAGATACGCTGGAACTTTTGATTTTGCCGCATCATTTTCATCAATTGAACATTCTGGATTGGGTAGATATGGAGATCCGATGGATCCTATTGGAGATTTGAGAGAGATGCTCAAAATTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24454</snp_id>
        <super_contig>c000800839.Contig2</super_contig>
        <contig_pos>2060</contig_pos>
        <strand>+</strand>
        <context>CATTTTCATC[A/G]ATWGAACATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGATTTTCAGATACGCTGGAACTTTTGATTTTGCCGCATCATTTTCATC</left_flank>
        <right_flank>ATTGAACATTCTGGATTGGGTAGATATGGAGATCCGATGGATCCTATTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTCGGGATGGGGTGACAAACCAAGAAATTGGGATCGCATTTCAGAAATTATGACCTATTCGAAAAAGCAAATTGCAAATTTGGCATATCCAGTTGAGTCAGGTAATTAAAAAAATTGTCAAAAAAATTGTTTTTTAATATTTTTATTTTCAGAATCCATGTACAATGCGATGGCTGCAAATCGTCTGGATAATTTGACTGGGGTTGTGGTCGGGTCCATGCAACCATGGGTGGAAGTTTATGCTCTGAAAAATGGTAATTTTTGAAAAAAATTTTTTTTTTTGAAAATTTTAATTTTCAGGCGCCAAAAAAATTCTGACAGTGGAATACAACAAATTGACCATTCAACCGGAATTTCAAGACAGATTGTCATCGATTCTTCCGGTGGATTTCGTGAGAAATTGGGAAAAGTTAGTTTTTCATGCAAATCTGAAAATTTGGAATACTGAGATTTTCAGATACGCTGGAACTTTTGATTTTGCCGCATCATTTTCATCAATTGAACATTCTGGATTGGGTAGATATGGAGATCCGATGGATCCTATTGGAGATTTGAGAGAGATGCTCAAAATTAAGTGTATGCTGAAACCGGGAGGTAGAAGTTTTTGAAATTTTTGAATTTTTGAATTTTTGAATGTTTGAATTTTTGAATTTTTGAATTTTCAAATTTTTGAATTTTCGAATTTTCGAATTTTCGAATTTTTGAATTTTTGAATTTTCGAATTTTTGAATTTTTGAAATTTTTGAAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTTTTGAAATTTTTGAATTTTCGAATTTTTGAATTTTTGAATTTTCGAATTTTTGAATTTTTGAAATTTTTGAAATTTTTGAATTTTTGAATTTTTGAATGTTTGAATTTTTGAATTTTTGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>AAATTCGGGATGGGGTGACAAACCAAGAAATTGGGATCGCATTTCAGAAATTATGACCTATTCGAAAAAGCAAATTGCAAATTTGGCATATCCAGTTGAGTCAGGTAATTAAAAAAATTGTCAAAAAAATTGTTTTTTAATATTTTTATTTTCAGAATCCATGTACAATGCGATGGCTGCAAATCGTCTGGATAATTTGACTGGGGTTGTGGTCGGGTCCATGCAACCATGGGTGGAAGTTTATGCTCTGAAAAATGGTAATTTTTGAAAAAAATTTTTTTTTTTGAAAATTTTAATTTTCAGGCGCCAAAAAAATTCTGACAGTGGAATACAACAAATTGACCATTCAACCGGAATTTCAAGACAGATTGTCATCGATTCTTCCGGTGGATTTCGTGAGAAATTGGGAAAAGTTAGTTTTTCATGCAAATCTGAAAATTTGGAATACTGAGATTTTCAGATACGCTGGAACTTTTGATTTTGCCGCATCATTTTCATCRATTGAACATTCTGGATTGGGTAGATATGGAGATCCGATGGATCCTATTGGAGATTTGAGAGAGATGCTCAAAATTAAGTGTATGCTGAAACCGGGAGGTAGAAGTTTTTGAAATTTTTGAATTTTTGAATTTTTGAATGTTTGAATTTTTGAATTTTTGAATTTTCAAATTTTTGAATTTTCGAATTTTCGAATTTTCGAATTTTTGAATTTTTGAATTTTCGAATTTTTGAATTTTTGAAATTTTTGAAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTTTTGAAATTTTTGAATTTTCGAATTTTTGAATTTTTGAATTTTCGAATTTTTGAATTTTTGAAATTTTTGAAATTTTTGAATTTTTGAATTTTTGAATGTTTGAATTTTTGAATTTTTGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>104 72 66 66 63 47 40 35 27 27 24 23 20 19 18 16 16 16 13 12 9 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 6 1</canonical_bands>
                <polymorphic_bands>135 104 66 66 47 40 35 27 27 24 23 20 19 18 16 16 16 13 12 9 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 6 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACAACAAATTGACCATTCAAC</pcr_primer_p1>
		<pcr_primer_p2>CTTAATTTTGAGCATCTCTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATACAACAAATTGACCATTCAACCGGAATTTCAAGACAGATTGTCATCGATTCTTCCGGTGGATTTCGTGAGAAATTGGGAAAAGTTAGTTTTTCATGCAAATCTGAAAATTTGGAATACTGAGATTTTCAGATACGCTGGAACTTTTGATTTTGCCGCATCATTTTCATCAATTGAACATTCTGGATTGGGTAGATATGGAGATCCGATGGATCCTATTGGAGATTTGAGAGAGATGCTCAAAATTAAG</canonical_amplicon>
		<polymorphic_amplicon>ATACAACAAATTGACCATTCAACCGGAATTTCAAGACAGATTGTCATCGATTCTTCCGGTGGATTTCGTGAGAAATTGGGAAAAGTTAGTTTTTCATGCAAATCTGAAAATTTGGAATACTGAGATTTTCAGATACGCTGGAACTTTTGATTTTGCCGCATCATTTTCATCRATTGAACATTCTGGATTGGGTAGATATGGAGATCCGATGGATCCTATTGGAGATTTGAGAGAGATGCTCAAAATTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24455</snp_id>
        <super_contig>c000800839.Contig2</super_contig>
        <contig_pos>2063</contig_pos>
        <strand>+</strand>
        <context>TTTCATCRAT[A/T]GAACATTCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTCAGATACGCTGGAACTTTTGATTTTGCCGCATCATTTTCATCAAT</left_flank>
        <right_flank>GAACATTCTGGATTGGGTAGATATGGAGATCCGATGGATCCTATTGGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGGGATGGGGTGACAAACCAAGAAATTGGGATCGCATTTCAGAAATTATGACCTATTCGAAAAAGCAAATTGCAAATTTGGCATATCCAGTTGAGTCAGGTAATTAAAAAAATTGTCAAAAAAATTGTTTTTTAATATTTTTATTTTCAGAATCCATGTACAATGCGATGGCTGCAAATCGTCTGGATAATTTGACTGGGGTTGTGGTCGGGTCCATGCAACCATGGGTGGAAGTTTATGCTCTGAAAAATGGTAATTTTTGAAAAAAATTTTTTTTTTTGAAAATTTTAATTTTCAGGCGCCAAAAAAATTCTGACAGTGGAATACAACAAATTGACCATTCAACCGGAATTTCAAGACAGATTGTCATCGATTCTTCCGGTGGATTTCGTGAGAAATTGGGAAAAGTTAGTTTTTCATGCAAATCTGAAAATTTGGAATACTGAGATTTTCAGATACGCTGGAACTTTTGATTTTGCCGCATCATTTTCATCAATTGAACATTCTGGATTGGGTAGATATGGAGATCCGATGGATCCTATTGGAGATTTGAGAGAGATGCTCAAAATTAAGTGTATGCTGAAACCGGGAGGTAGAAGTTTTTGAAATTTTTGAATTTTTGAATTTTTGAATGTTTGAATTTTTGAATTTTTGAATTTTCAAATTTTTGAATTTTCGAATTTTCGAATTTTCGAATTTTTGAATTTTTGAATTTTCGAATTTTTGAATTTTTGAAATTTTTGAAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTTTTGAAATTTTTGAATTTTCGAATTTTTGAATTTTTGAATTTTCGAATTTTTGAATTTTTGAAATTTTTGAAATTTTTGAATTTTTGAATTTTTGAATGTTTGAATTTTTGAATTTTTGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>TTCGGGATGGGGTGACAAACCAAGAAATTGGGATCGCATTTCAGAAATTATGACCTATTCGAAAAAGCAAATTGCAAATTTGGCATATCCAGTTGAGTCAGGTAATTAAAAAAATTGTCAAAAAAATTGTTTTTTAATATTTTTATTTTCAGAATCCATGTACAATGCGATGGCTGCAAATCGTCTGGATAATTTGACTGGGGTTGTGGTCGGGTCCATGCAACCATGGGTGGAAGTTTATGCTCTGAAAAATGGTAATTTTTGAAAAAAATTTTTTTTTTTGAAAATTTTAATTTTCAGGCGCCAAAAAAATTCTGACAGTGGAATACAACAAATTGACCATTCAACCGGAATTTCAAGACAGATTGTCATCGATTCTTCCGGTGGATTTCGTGAGAAATTGGGAAAAGTTAGTTTTTCATGCAAATCTGAAAATTTGGAATACTGAGATTTTCAGATACGCTGGAACTTTTGATTTTGCCGCATCATTTTCATCAATWGAACATTCTGGATTGGGTAGATATGGAGATCCGATGGATCCTATTGGAGATTTGAGAGAGATGCTCAAAATTAAGTGTATGCTGAAACCGGGAGGTAGAAGTTTTTGAAATTTTTGAATTTTTGAATTTTTGAATGTTTGAATTTTTGAATTTTTGAATTTTCAAATTTTTGAATTTTCGAATTTTCGAATTTTCGAATTTTTGAATTTTTGAATTTTCGAATTTTTGAATTTTTGAAATTTTTGAAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTTTTGAAATTTTTGAATTTTCGAATTTTTGAATTTTTGAATTTTCGAATTTTTGAATTTTTGAAATTTTTGAAATTTTTGAATTTTTGAATTTTTGAATGTTTGAATTTTTGAATTTTTGAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>107 72 66 66 63 47 40 35 27 25 24 23 20 19 18 16 16 16 13 12 9 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 6</canonical_bands>
                <polymorphic_bands>135 107 66 66 47 40 35 27 25 24 23 20 19 18 16 16 16 13 12 9 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACAACAAATTGACCATTCAAC</pcr_primer_p1>
		<pcr_primer_p2>CTTAATTTTGAGCATCTCTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATACAACAAATTGACCATTCAACCGGAATTTCAAGACAGATTGTCATCGATTCTTCCGGTGGATTTCGTGAGAAATTGGGAAAAGTTAGTTTTTCATGCAAATCTGAAAATTTGGAATACTGAGATTTTCAGATACGCTGGAACTTTTGATTTTGCCGCATCATTTTCATCAATTGAACATTCTGGATTGGGTAGATATGGAGATCCGATGGATCCTATTGGAGATTTGAGAGAGATGCTCAAAATTAAG</canonical_amplicon>
		<polymorphic_amplicon>ATACAACAAATTGACCATTCAACCGGAATTTCAAGACAGATTGTCATCGATTCTTCCGGTGGATTTCGTGAGAAATTGGGAAAAGTTAGTTTTTCATGCAAATCTGAAAATTTGGAATACTGAGATTTTCAGATACGCTGGAACTTTTGATTTTGCCGCATCATTTTCATCAATWGAACATTCTGGATTGGGTAGATATGGAGATCCGATGGATCCTATTGGAGATTTGAGAGAGATGCTCAAAATTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24456</snp_id>
        <super_contig>c000800839.Contig2</super_contig>
        <contig_pos>12485</contig_pos>
        <strand></strand>
        <context>taaacatttt[T/A]ttagttgaca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CAAAAAGTGGTCAACTGATAAAATGTTGCTGATATCATGATAAACATTTT</left_flank>
        <right_flank>TTAGTTGACAACTTTCCGATATCTTTCAAAAGAAGTGAGATATATAGGCA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGAAAGAGGAGAGGAATAAAAAGTTTTCTCTCTCTTTTTCTCTAAATCTCTTCCTCTGTTTTCTCTCTCACGTTTCACTCTTTTTGCTATCACCACACGAAAGAGATTATCAGAGAATTGGTTTCTATTTTTTTGGGAGAATTTTTCGCCAAAAAGTTGCAAATCTCGTGATTTTTTCAATTTTTTTGGCGCCAAAATTGAATTATTTTTTCAATTTTAAGCAAAAGTTCCTGTTTTAACTATGACTTTCATTCAAATTTCGGCGTTTTTTTTGCTCAAAAAGACGATCAAAAAGACGAAGATTTTTTGGTTTTTCATGAAATATGGATTTTTGTTTTGATATTTTGAACCATTTCCAGGCTCATTTTACTTAGCGTAAACACTCTATTAAAACGCCACCCTAATCGTCAAATTTGAGCTCATGTATCTCATTTTCTGTGAGAGATATCAAAAAGTGGTCAACTGATAAAATGTTGCTGATATCATGATAAACATTTTTTTAGTTGACAACTTTCCGATATCTTTCAAAAGAAGTGAGATATATAGGCACAAAGTGAACGGTCCGGGTGGCGTTCGTGTTTTCGGTAATTTGAAATTTTTTGTGCCAAAATTTAACAATTTTTTTGCAAGAAATTTTTTATCATTTTCTCTAAGTTTGGGCCTTTTTTCCACCTTTTTTTTTGGAAATAGTTCGAAAATTAGATGATTTTTCAAATTTTTTGGTTCCAAAATTTTAGATTTTTCAGAAAATTTGACTTCCTGTAAGTTTTGACTTTTTTTTCCGCTAAAAAAATTTTTTTTTGTCATTTTTGTCATATTTTCTATATAAATTTTGAAGCACCGTAAAACCTATATAAGATGGGCCGGCCCCTTCTAAGATACCTCCGGAGGGCCCTTCTATTACAGGGGGCCTTTCCGGCCAGTTTTTCCCAGAAATTTTGCATCGAAAAATCCGACGAAGTTTCGTTTGAAATTGAAAACCTGAAAAAAACACAATTT</canonical>
            <polymorphic>GGGAAAGAGGAGAGGAATAAAAAGTTTTCTCTCTCTTTTTCTCTAAATCTCTTCCTCTGTTTTCTCTCTCACGTTTCACTCTTTTTGCTATCACCACACGAAAGAGATTATCAGAGAATTGGTTTCTATTTTTTTGGGAGAATTTTTCGCCAAAAAGTTGCAAATCTCGTGATTTTTTCAATTTTTTTGGCGCCAAAATTGAATTATTTTTTCAATTTTAAGCAAAAGTTCCTGTTTTAACTATGACTTTCATTCAAATTTCGGCGTTTTTTTTGCTCAAAAAGACGATCAAAAAGACGAAGATTTTTTGGTTTTTCATGAAATATGGATTTTTGTTTTGATATTTTGAACCATTTCCAGGCTCATTTTACTTAGCGTAAACACTCTATTAAAACGCCACCCTAATCGTCAAATTTGAGCTCATGTATCTCATTTTCTGTGAGAGATATCAAAAAGTGGTCAACTGATAAAATGTTGCTGATATCATGATAAACATTTTWTTAGTTGACAACTTTCCGATATCTTTCAAAAGAAGTGAGATATATAGGCACAAAGTGAACGGTCCGGGTGGCGTTCGTGTTTTCGGTAATTTGAAATTTTTTGTGCCAAAATTTAACAATTTTTTTGCAAGAAATTTTTTATCATTTTCTCTAAGTTTGGGCCTTTTTTCCACCTTTTTTTTTGGAAATAGTTCGAAAATTAGATGATTTTTCAAATTTTTTGGTTCCAAAATTTTAGATTTTTCAGAAAATTTGACTTCCTGTAAGTTTTGACTTTTTTTTCCGCTAAAAAAATTTTTTTTTGTCATTTTTGTCATATTTTCTATATAAATTTTGAAGCACCGTAAAACCTATATAAGATGGGCCGGCCCCTTCTAAGATACCTCCGGAGGGCCCTTCTATTACAGGGGGCCTTTCCGGCCAGTTTTTCCCAGAAATTTTGCATCGAAAAATCCGACGAAGTTTCGTTTGAAATTGAAAACCTGAAAAAAACACAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCCAGGCTCATTTTACTTAG</pcr_primer_p1>
		<pcr_primer_p2>CCAAACTTAGAGAAAATGATAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>308</pcr_amplicon_size>
		<canonical_amplicon>ATTTCCAGGCTCATTTTACTTAGCGTAAACACTCTATTAAAACGCCACCCTAATCGTCAAATTTGAGCTCATGTATCTCATTTTCTGTGAGAGATATCAAAAAGTGGTCAACTGATAAAATGTTGCTGATATCATGATAAACATTTTTTTAGTTGACAACTTTCCGATATCTTTCAAAAGAAGTGAGATATATAGGCACAAAGTGAACGGTCCGGGTGGCGTTCGTGTTTTCGGTAATTTGAAATTTTTTGTGCCAAAATTTAACAATTTTTTTGCAAGAAATTTTTTATCATTTTCTCTAAGTTTGG</canonical_amplicon>
		<polymorphic_amplicon>ATTTCCAGGCTCATTTTACTTAGCGTAAACACTCTATTAAAACGCCACCCTAATCGTCAAATTTGAGCTCATGTATCTCATTTTCTGTGAGAGATATCAAAAAGTGGTCAACTGATAAAATGTTGCTGATATCATGATAAACATTTTWTTAGTTGACAACTTTCCGATATCTTTCAAAAGAAGTGAGATATATAGGCACAAAGTGAACGGTCCGGGTGGCGTTCGTGTTTTCGGTAATTTGAAATTTTTTGTGCCAAAATTTAACAATTTTTTTGCAAGAAATTTTTTATCATTTTCTCTAAGTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24457</snp_id>
        <super_contig>c000800839.Contig2</super_contig>
        <contig_pos>13236</contig_pos>
        <strand>+</strand>
        <context>TTTACACTTT[C/T]TTATAATGTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTTGTTTAATGTTGATGTGAAAAATAGCATTTTTCATTTTTACACTTT</left_flank>
        <right_flank>TTATAATGTGGAAAAAAATGTTCGAGAATTTCACGAAAAATTTTTGTGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGACTTCCTGTAAGTTTTGACTTTTTTTTCCGCTAAAAAAATTTTTTTTTGTCATTTTTGTCATATTTTCTATATAAATTTTGAAGCACCGTAAAACCTATATAAGATGGGCCGGCCCCTTCTAAGATACCTCCGGAGGGCCCTTCTATTACAGGGGGCCTTTCCGGCCAGTTTTTCCCAGAAATTTTGCATCGAAAAATCCGACGAAGTTTCGTTTGAAATTGAAAACCTGAAAAAAACACAATTTGAAGGGGGTCATTTTTCATAGAGGGCCCTTCTATTAGAGGGGCCCTTCTATCACGGGGCTCTTCTAATACAGGTTTTACGGTATTTCTTTTCGTTTTTTTTTCAATTTTCCTAAATTTTGGTCCATTTTTTTTCCCTGAAATGATTCATTTTTCTCATTTTTTTCTTTAAAAAAAAACTTTGCTTTGCGGCATGTATTCCTCTTTGTTTAATGTTGATGTGAAAAATAGCATTTTTCATTTTTACACTTTCTTATAATGTGGAAAAAAATGTTCGAGAATTTCACGAAAAATTTTTGTGAGAAAAATTCAAAAATCCAGAAATTCAGAAATTCAGAAATTCAACGTTTTCCGGAATGGTTTTTTTGAAAAAAAATCAGAAGTTTGCAGATTTCTAGATTTCGAAAAAATTGGGAATAAACTAAAGAGGAAACTCTTTTTCCCAAGAGGTGGTCTAGAAATCCAACAATTTTGAAATTCTAGGCCATCTTCTCTATTTCTGATCTTTCGATCTACCTAATTCACTCTGTTTTTGTCGATTTTTATCTCAAATTTCAATCTTTTCACCGACTATTTCTCTCTGAAATTTTTGTTTTTAACTTCCAATAATCACATGATTTTCCCCCAAAATCCTGTTATTTTCTCTAATTTTTCCCTGAAAAATTTCTTTTGACCCTATCAAAGTGCTTATTTTTTAAATGTTTTTTTTTCAAAAAATTAAAAATAAGAAGAGCACATTGCTCATCTTTTCTT</canonical>
            <polymorphic>TTTGACTTCCTGTAAGTTTTGACTTTTTTTTCCGCTAAAAAAATTTTTTTTTGTCATTTTTGTCATATTTTCTATATAAATTTTGAAGCACCGTAAAACCTATATAAGATGGGCCGGCCCCTTCTAAGATACCTCCGGAGGGCCCTTCTATTACAGGGGGCCTTTCCGGCCAGTTTTTCCCAGAAATTTTGCATCGAAAAATCCGACGAAGTTTCGTTTGAAATTGAAAACCTGAAAAAAACACAATTTGAAGGGGGTCATTTTTCATAGAGGGCCCTTCTATTAGAGGGGCCCTTCTATCACGGGGCTCTTCTAATACAGGTTTTACGGTATTTCTTTTCGTTTTTTTTTCAATTTTCCTAAATTTTGGTCCATTTTTTTTCCCTGAAATGATTCATTTTTCTCATTTTTTTCTTTAAAAAAAAACTTTGCTTTGCGGCATGTATTCCTCTTTGTTTAATGTTGATGTGAAAAATAGCATTTTTCATTTTTACACTTTYTTATAATGTGGAAAAAAATGTTCGAGAATTTCACGAAAAATTTTTGTGAGAAAAATTCAAAAATCCAGAAATTCAGAAATTCAGAAATTCAACGTTTTCCGGAATGGTTTTTTTGAAAAAAAATCAGAAGTTTGCAGATTTCTAGATTTCGAAAAAATTGGGAATAAACTAAAGAGGAAACTCTTTTTCCCAAGAGGTGGTCTAGAAATCCAACAATTTTGAAATTCTAGGCCATCTTCTCTATTTCTGATCTTTCGATCTACCTAATTCACTCTGTTTTTGTCGATTTTTATCTCAAATTTCAATCTTTTCACCGACTATTTCTCTCTGAAATTTTTGTTTTTAACTTCCAATAATCACATGATTTTCCCCCAAAATCCTGTTATTTTCTCTAATTTTTCCCTGAAAAATTTCTTTTGACCCTATCAAAGTGCTTATTTTTTAAATGTTTTTTTTTCAAAAAATTAAAAATAAGAAGAGCACATTGCTCATCTTTTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATTCCTCTTTGTTTAATGTTG</pcr_primer_p1>
		<pcr_primer_p2>GGAAAAAGAGTTTCCTCTTTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTATTCCTCTTTGTTTAATGTTGATGTGAAAAATAGCATTTTTCATTTTTACACTTTCTTATAATGTGGAAAAAAATGTTCGAGAATTTCACGAAAAATTTTTGTGAGAAAAATTCAAAAATCCAGAAATTCAGAAATTCAGAAATTCAACGTTTTCCGGAATGGTTTTTTTGAAAAAAAATCAGAAGTTTGCAGATTTCTAGATTTCGAAAAAATTGGGAATAAACTAAAGAGGAAACTCTTTTTCC</canonical_amplicon>
		<polymorphic_amplicon>TGTATTCCTCTTTGTTTAATGTTGATGTGAAAAATAGCATTTTTCATTTTTACACTTTYTTATAATGTGGAAAAAAATGTTCGAGAATTTCACGAAAAATTTTTGTGAGAAAAATTCAAAAATCCAGAAATTCAGAAATTCAGAAATTCAACGTTTTCCGGAATGGTTTTTTTGAAAAAAAATCAGAAGTTTGCAGATTTCTAGATTTCGAAAAAATTGGGAATAAACTAAAGAGGAAACTCTTTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24458</snp_id>
        <super_contig>c000800839.Contig2</super_contig>
        <contig_pos>14287</contig_pos>
        <strand></strand>
        <context>aaattcagaa[T/A]ttcagaaatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAATTCCGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAA</left_flank>
        <right_flank>TTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAGCCAGTGTAATAATTGGCGGAAAAAATAGGAGAAAAAATTAAAAGAAGAAAGAAATGAGAGAGAGAGATAATGAAATTTGAGGAGACGCAGGTAAGTTGGCTCGGTTGGCTCACTTTTACTCATCTATTTTTGTTTTCTTTTTGGAATTCGTTGGTGTCTAGAAGATTGTTGACGGCCTAGAGAATTCTAGGTCATTGATTTTAGAAAGTTTGGAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCCGAAATTCATAAATTCCGAAATTCCGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCCGAAATTCATAAATTCCGAAATTCCGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAATTTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCATTTTCATTCAGAAGACCCCCTCTATTTGAAGGGACCCTGTAATAGAAGGGCCATCCGGAGGAAAATACAAGTTTACGGTATCAAAAAAAATTTCAGCATCCATTTTCGAATGCCATTTTCTTTGACTTCAATTCTCTCAAAATTTTCAAATTTTCAAAGATTTTCTTTTTTTTGATTCCTCTCCATTTCTCCTTGTAGTTTAGAAAATTCGTGTTTTTTCCAAAAAAAAAAGTTTTCAAAACCAAAATTTCTAACCTTCCACCAATGCCTTCAAACCCCTCAATCTTCTTTTTTTCCGCTGAAACTTCGTATTACTTCAGCATTAAATATTTTGAGCTCTCTGGGGAGAGAGAGAGTGAGTGAGTGAGTGAGAGACGCAGAGAATTTTGGTTTCCATGGAGAAAAAGAAGATAGGCTGTTATGAAAAACAGA</canonical>
            <polymorphic>AAAAGCCAGTGTAATAATTGGCGGAAAAAATAGGAGAAAAAATTAAAAGAAGAAAGAAATGAGAGAGAGAGATAATGAAATTTGAGGAGACGCAGGTAAGTTGGCTCGGTTGGCTCACTTTTACTCATCTATTTTTGTTTTCTTTTTGGAATTCGTTGGTGTCTAGAAGATTGTTGACGGCCTAGAGAATTCTAGGTCATTGATTTTAGAAAGTTTGGAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCCGAAATTCATAAATTCCGAAATTCCGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCCGAAATTCATAAATTCCGAAATTCCGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAWTTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCATTTTCATTCAGAAGACCCCCTCTATTTGAAGGGACCCTGTAATAGAAGGGCCATCCGGAGGAAAATACAAGTTTACGGTATCAAAAAAAATTTCAGCATCCATTTTCGAATGCCATTTTCTTTGACTTCAATTCTCTCAAAATTTTCAAATTTTCAAAGATTTTCTTTTTTTTGATTCCTCTCCATTTCTCCTTGTAGTTTAGAAAATTCGTGTTTTTTCCAAAAAAAAAAGTTTTCAAAACCAAAATTTCTAACCTTCCACCAATGCCTTCAAACCCCTCAATCTTCTTTTTTTCCGCTGAAACTTCGTATTACTTCAGCATTAAATATTTTGAGCTCTCTGGGGAGAGAGAGAGTGAGTGAGTGAGTGAGAGACGCAGAGAATTTTGGTTTCCATGGAGAAAAAGAAGATAGGCTGTTATGAAAAACAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>137 94 78 71 57 52 50 40 38 31 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>137 94 78 71 57 52 50 40 38 31 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>137 94 71 57 50 41 40 38 38 31 25 15 11 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>137 94 71 57 50 41 40 38 38 31 25 16 15 11 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGAATTCTAGGTCATTGATTTT</pcr_primer_p1>
		<pcr_primer_p2>TACCGTAAACTTGTATTTTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>465</pcr_amplicon_size>
		<canonical_amplicon>AGAGAATTCTAGGTCATTGATTTTAGAAAGTTTGGAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCCGAAATTCATAAATTCCGAAATTCCGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCCGAAATTCATAAATTCCGAAATTCCGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAATTTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCATTTTCATTCAGAAGACCCCCTCTATTTGAAGGGACCCTGTAATAGAAGGGCCATCCGGAGGAAAATACAAGTTTACGGTA</canonical_amplicon>
		<polymorphic_amplicon>AGAGAATTCTAGGTCATTGATTTTAGAAAGTTTGGAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCCGAAATTCATAAATTCCGAAATTCCGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCCGAAATTCATAAATTCCGAAATTCCGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAWTTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCATTTTCATTCAGAAGACCCCCTCTATTTGAAGGGACCCTGTAATAGAAGGGCCATCCGGAGGAAAATACAAGTTTACGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24459</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>16483</contig_pos>
        <strand></strand>
        <context>aattttaggc[A/G]mtttmaagtg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGC</left_flank>
        <right_flank>CTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTAC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGGCTGTTTCAGACGAGTTTTGAGGTAGTTTAGGTCGATTTTTCAGCTATTTTAGAATCATTTCCAATCATTTTCAGCCAATTTTTCGAGAAGTTTCAGAGCTGGCTTTTTTTTTCTAGGGCTGATTCTGGGGCAAGGTACTAGCTACAGTACCCCAAAAAGAACTACAGTAATCCCGGAAAATAGCTACAGTAGACTCTTGAACTACAATAACCGCAGAAACTACAGTAACCTCGAAAACAACTACAGTAATCCCTCGAACTACAGTAACGTCCGAAAAATCTACACTTATCCCGAAAATGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGACACAAAGC</canonical>
            <polymorphic>TGGGCTGTTTCAGACGAGTTTTGAGGTAGTTTAGGTCGATTTTTCAGCTATTTTAGAATCATTTCCAATCATTTTCAGCCAATTTTTCGAGAAGTTTCAGAGCTGGCTTTTTTTTTCTAGGGCTGATTCTGGGGCAAGGTACTAGCTACAGTACCCCAAAAAGAACTACAGTAATCCCGGAAAATAGCTACAGTAGACTCTTGAACTACAATAACCGCAGAAACTACAGTAACCTCGAAAACAACTACAGTAATCCCTCGAACTACAGTAACGTCCGAAAAATCTACACTTATCCCGAAAATGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCRCTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGACACAAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>288 221 212 188 62 13 10 6</canonical_bands>
                <polymorphic_bands>288 222 221 188 62 13 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCTACAGTAACCTCAAGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TACTGTAATGCAAAAACTGTACG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTA</canonical_amplicon>
		<polymorphic_amplicon>TGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCRCTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24460</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>16484</contig_pos>
        <strand></strand>
        <context>attttaggcr[C/A]tttmaagtga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCA</left_flank>
        <right_flank>TTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGCTGTTTCAGACGAGTTTTGAGGTAGTTTAGGTCGATTTTTCAGCTATTTTAGAATCATTTCCAATCATTTTCAGCCAATTTTTCGAGAAGTTTCAGAGCTGGCTTTTTTTTTCTAGGGCTGATTCTGGGGCAAGGTACTAGCTACAGTACCCCAAAAAGAACTACAGTAATCCCGGAAAATAGCTACAGTAGACTCTTGAACTACAATAACCGCAGAAACTACAGTAACCTCGAAAACAACTACAGTAATCCCTCGAACTACAGTAACGTCCGAAAAATCTACACTTATCCCGAAAATGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGACACAAAGCG</canonical>
            <polymorphic>GGGCTGTTTCAGACGAGTTTTGAGGTAGTTTAGGTCGATTTTTCAGCTATTTTAGAATCATTTCCAATCATTTTCAGCCAATTTTTCGAGAAGTTTCAGAGCTGGCTTTTTTTTTCTAGGGCTGATTCTGGGGCAAGGTACTAGCTACAGTACCCCAAAAAGAACTACAGTAATCCCGGAAAATAGCTACAGTAGACTCTTGAACTACAATAACCGCAGAAACTACAGTAACCTCGAAAACAACTACAGTAATCCCTCGAACTACAGTAACGTCCGAAAAATCTACACTTATCCCGAAAATGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCAMTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGACACAAAGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>287 221 212 188 62 13 10 7</canonical_bands>
                <polymorphic_bands>287 222 221 188 62 13 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTACTACAGTAACCTCCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GATCTTCGTAGCTAGCTTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>TTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATC</canonical_amplicon>
		<polymorphic_amplicon>TTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCAMTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24461</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>16488</contig_pos>
        <strand></strand>
        <context>taggcrmttt[C/A]aagtgatttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTT</left_flank>
        <right_flank>AAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTCAGACGAGTTTTGAGGTAGTTTAGGTCGATTTTTCAGCTATTTTAGAATCATTTCCAATCATTTTCAGCCAATTTTTCGAGAAGTTTCAGAGCTGGCTTTTTTTTTCTAGGGCTGATTCTGGGGCAAGGTACTAGCTACAGTACCCCAAAAAGAACTACAGTAATCCCGGAAAATAGCTACAGTAGACTCTTGAACTACAATAACCGCAGAAACTACAGTAACCTCGAAAACAACTACAGTAATCCCTCGAACTACAGTAACGTCCGAAAAATCTACACTTATCCCGAAAATGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGACACAAAGCGATCG</canonical>
            <polymorphic>TGTTTCAGACGAGTTTTGAGGTAGTTTAGGTCGATTTTTCAGCTATTTTAGAATCATTTCCAATCATTTTCAGCCAATTTTTCGAGAAGTTTCAGAGCTGGCTTTTTTTTTCTAGGGCTGATTCTGGGGCAAGGTACTAGCTACAGTACCCCAAAAAGAACTACAGTAATCCCGGAAAATAGCTACAGTAGACTCTTGAACTACAATAACCGCAGAAACTACAGTAACCTCGAAAACAACTACAGTAATCCCTCGAACTACAGTAACGTCCGAAAAATCTACACTTATCCCGAAAATGCTACAGTAACCTCAAGAAAATCTATAGTAATCCTTTGAACTAAAGTACCCCCAAAAAATGGTACAGTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTMAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGACACAAAGCGATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTACTACAGTAACCTCCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GATCTTCGTAGCTAGCTTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>TTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATC</canonical_amplicon>
		<polymorphic_amplicon>TTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTMAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24462</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>16851</contig_pos>
        <strand></strand>
        <context>ggtttcagac[G/T]aattctaggt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGAC</left_flank>
        <right_flank>AATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGACACAAAGCGATCGCTTCCACGGCGTTTTGTAGTTTCGCCGCGAATGAGTGTCTGGAAAGAAAGGGATTACTGTAGCTTTGATGGGTTACTGTAGCTCTCTCACTTGGCCATTCTACCAGCATATCCACTCTTCACATGTTGTGCCACCTCTTCAAACGCGTCCGAATTGAACGCGACGGTTCCCAAGTGAATCTTCTTGAAGTGCATCTCATTCTTCGTCAGTGTTCCCGTCTTGTCCGATAGCAAGAACGAGATTCTGCCCAGTTCTTCGGGAATCGTCGACGAGCGGATTACGGTATCCGGTATGTGCTTGTCGCGGCCGATTTGCCACGAATAGAACAGTTTGGCCATGTCCAGGTTGACACGGAGCGAGATT</canonical>
            <polymorphic>GTAATCCGTTGTACTACAGTAACCTCCAAAAAAGCAGCTATAGTAACGATCGATAGAGCTACAGTAACCCCGGAAAAGCTACAATTATCATTTCAGGCCAATTTCAGACCGATTTTCAGCTAATTTTAGGCACTTTCAAGTGATTTTCAGCCTAATCTCAATTCGTACAGTTTTTGCATTACAGTAATCCCAAAAAAGCTACAGTAATCTCCTGAATAATATACAGTAATCTTTTGAACTACAATAACCCCGAACAAGCTAGCTACGAAGATCCCTTGAATTACAGTAACCCTGTAAAAGCTACAGTAACCCCGAACAAGCTACAAAGATTACTTGAACAACAGTAATCCCGAAAAATCTACACATATCCCGTAAAAGCTACAGTAATCTTAAGAAAATTTATATTAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACKAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGACACAAAGCGATCGCTTCCACGGCGTTTTGTAGTTTCGCCGCGAATGAGTGTCTGGAAAGAAAGGGATTACTGTAGCTTTGATGGGTTACTGTAGCTCTCTCACTTGGCCATTCTACCAGCATATCCACTCTTCACATGTTGTGCCACCTCTTCAAACGCGTCCGAATTGAACGCGACGGTTCCCAAGTGAATCTTCTTGAAGTGCATCTCATTCTTCGTCAGTGTTCCCGTCTTGTCCGATAGCAAGAACGAGATTCTGCCCAGTTCTTCGGGAATCGTCGACGAGCGGATTACGGTATCCGGTATGTGCTTGTCGCGGCCGATTTGCCACGAATAGAACAGTTTGGCCATGTCCAGGTTGACACGGAGCGAGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>500 396 104</canonical_bands>
                <polymorphic_bands>604 396</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATCCTTTGAACTACAGTGACC</pcr_primer_p1>
		<pcr_primer_p2>GTCATAACGTTACACCGATATTT</pcr_primer_p2>
		<pcr_amplicon_size>220</pcr_amplicon_size>
		<canonical_amplicon>TAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACGAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGAC</canonical_amplicon>
		<polymorphic_amplicon>TAATCCTTTGAACTACAGTGACCCTGGAAGATCTACAATAATCCCCGAAAATGCAAAAAAAATCGTCCTAGATGTATTTTAGGCGGTTTCAGACKAATTCTAGGTCATTTCAGACCTATTTTAAGCCAATTTCAGCTAATTTCAGACGATTTTACCTCATCCGGGCTCGCCGCCTGATACGACGTTTCTCCATTCTCAAATATCGGTGTAACGTTATGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24463</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>19110</contig_pos>
        <strand></strand>
        <context>gatatcaaaa[G/A]tgtgtcaact</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACTGCCCGTTTTGACCTAAATTATCTCGGTTACTATTAGAGATATCAAAA</left_flank>
        <right_flank>TGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACATTTTATCAGT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAGATTTTCTCAGCGAATTTCGGCTCATTTTGAACCATTTTTTACAGAATTTTCAGCACATTTTTCGGTTCAAAAACCACCTCACCTTTCATGACAACCATGACTGAGGAGAGCATCAACACAAAGATAAACAAGAGTTTCGTCAAATTGTTCACTTCCAAATCGAGCAGTCCAACCTTGCTCTCCGGCAGTGTTGTATTCATCACAGAACGCGTTTCACGTCCAGTGTAGACGACGATTCCGACGGCGGTTCCCGATGCGACTACCGTATTCGCCCAGAGTACATTCTCAACGTTCAGCGAGCCATCTTGGACACTATCGTCGACGGTGATCTGCATAAAATTCAAGGTTTCTGGTTTCCATAGATATGAGAATTTTGAAAAATCCACAAGTTACAATTTTTAGACTCTTCAAAGTTTTAGATTCTGAAATTGGAATGGCCCTCACACTGCCCGTTTTGACCTAAATTATCTCGGTTACTATTAGAGATATCAAAAGTGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACATTTTATCAGTTGACAACTTTTTGATATCTCTGATAGGAACTGAGATAAATTGGCTCAAAAATCAAAGTTAGGGGGCCCTTCTATTACAGGTTTTCAGGTATTTTAGGAAAAGTTTTTTTTTCCAAATTTTTGGAATGTTGGATGTTCTGGAATTCTTCGATTTCTAGATTCCAAAATTCTACAAATCTGAAAATTTCGATTTTTCTTAAAAATCCTCACCTTCAACGTTCCCACAAACGCATGAATATCCTTTTGTGGCTTCTCCGCATAGACCTCACAATTCAACTCCATAATATCAGCTTCGTTAGGCAAGTGCTGGGTGTACGGTACCGGTATCCGCAGCTTCCAATCCGTCTCACCGTCGAGTTGGTCCGTTCGAATGAAGCATGCGCCCGACTTGTCCGTTGTTCGCAGCAGCACGACGTCGGCAGGCACACGACGGTCTTTGTGCATTATGATG</canonical>
            <polymorphic>TTCAGATTTTCTCAGCGAATTTCGGCTCATTTTGAACCATTTTTTACAGAATTTTCAGCACATTTTTCGGTTCAAAAACCACCTCACCTTTCATGACAACCATGACTGAGGAGAGCATCAACACAAAGATAAACAAGAGTTTCGTCAAATTGTTCACTTCCAAATCGAGCAGTCCAACCTTGCTCTCCGGCAGTGTTGTATTCATCACAGAACGCGTTTCACGTCCAGTGTAGACGACGATTCCGACGGCGGTTCCCGATGCGACTACCGTATTCGCCCAGAGTACATTCTCAACGTTCAGCGAGCCATCTTGGACACTATCGTCGACGGTGATCTGCATAAAATTCAAGGTTTCTGGTTTCCATAGATATGAGAATTTTGAAAAATCCACAAGTTACAATTTTTAGACTCTTCAAAGTTTTAGATTCTGAAATTGGAATGGCCCTCACACTGCCCGTTTTGACCTAAATTATCTCGGTTACTATTAGAGATATCAAAARTGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACATTTTATCAGTTGACAACTTTTTGATATCTCTGATAGGAACTGAGATAAATTGGCTCAAAAATCAAAGTTAGGGGGCCCTTCTATTACAGGTTTTCAGGTATTTTAGGAAAAGTTTTTTTTTCCAAATTTTTGGAATGTTGGATGTTCTGGAATTCTTCGATTTCTAGATTCCAAAATTCTACAAATCTGAAAATTTCGATTTTTCTTAAAAATCCTCACCTTCAACGTTCCCACAAACGCATGAATATCCTTTTGTGGCTTCTCCGCATAGACCTCACAATTCAACTCCATAATATCAGCTTCGTTAGGCAAGTGCTGGGTGTACGGTACCGGTATCCGCAGCTTCCAATCCGTCTCACCGTCGAGTTGGTCCGTTCGAATGAAGCATGCGCCCGACTTGTCCGTTGTTCGCAGCAGCACGACGTCGGCAGGCACACGACGGTCTTTGTGCATTATGATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>225 87 61 60 58 58 52 39 38 37 36 33 29 24 21 20 15 15 15 14 14 12 10 9 7 5 2 2 2</canonical_bands>
                <polymorphic_bands>225 87 61 60 58 58 54 39 38 37 36 33 29 24 21 20 15 15 15 14 14 12 10 9 7 5 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAAAAATCCACAAGTTACAAT</pcr_primer_p1>
		<pcr_primer_p2>AACATCCAACATTCCAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>308</pcr_amplicon_size>
		<canonical_amplicon>TTGAAAAATCCACAAGTTACAATTTTTAGACTCTTCAAAGTTTTAGATTCTGAAATTGGAATGGCCCTCACACTGCCCGTTTTGACCTAAATTATCTCGGTTACTATTAGAGATATCAAAAGTGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACATTTTATCAGTTGACAACTTTTTGATATCTCTGATAGGAACTGAGATAAATTGGCTCAAAAATCAAAGTTAGGGGGCCCTTCTATTACAGGTTTTCAGGTATTTTAGGAAAAGTTTTTTTTTCCAAATTTTTGGAATGTTGGATGTT</canonical_amplicon>
		<polymorphic_amplicon>TTGAAAAATCCACAAGTTACAATTTTTAGACTCTTCAAAGTTTTAGATTCTGAAATTGGAATGGCCCTCACACTGCCCGTTTTGACCTAAATTATCTCGGTTACTATTAGAGATATCAAAARTGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACATTTTATCAGTTGACAACTTTTTGATATCTCTGATAGGAACTGAGATAAATTGGCTCAAAAATCAAAGTTAGGGGGCCCTTCTATTACAGGTTTTCAGGTATTTTAGGAAAAGTTTTTTTTTCCAAATTTTTGGAATGTTGGATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24464</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>19141</contig_pos>
        <strand></strand>
        <context>tgctgataat[G/A]tgataaacat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACTATTAGAGATATCAAAAGTGTGTCAACTGATAAAATATTGCTGATAAT</left_flank>
        <right_flank>TGATAAACATTTTATCAGTTGACAACTTTTTGATATCTCTGATAGGAACT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAACCATTTTTTACAGAATTTTCAGCACATTTTTCGGTTCAAAAACCACCTCACCTTTCATGACAACCATGACTGAGGAGAGCATCAACACAAAGATAAACAAGAGTTTCGTCAAATTGTTCACTTCCAAATCGAGCAGTCCAACCTTGCTCTCCGGCAGTGTTGTATTCATCACAGAACGCGTTTCACGTCCAGTGTAGACGACGATTCCGACGGCGGTTCCCGATGCGACTACCGTATTCGCCCAGAGTACATTCTCAACGTTCAGCGAGCCATCTTGGACACTATCGTCGACGGTGATCTGCATAAAATTCAAGGTTTCTGGTTTCCATAGATATGAGAATTTTGAAAAATCCACAAGTTACAATTTTTAGACTCTTCAAAGTTTTAGATTCTGAAATTGGAATGGCCCTCACACTGCCCGTTTTGACCTAAATTATCTCGGTTACTATTAGAGATATCAAAAGTGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACATTTTATCAGTTGACAACTTTTTGATATCTCTGATAGGAACTGAGATAAATTGGCTCAAAAATCAAAGTTAGGGGGCCCTTCTATTACAGGTTTTCAGGTATTTTAGGAAAAGTTTTTTTTTCCAAATTTTTGGAATGTTGGATGTTCTGGAATTCTTCGATTTCTAGATTCCAAAATTCTACAAATCTGAAAATTTCGATTTTTCTTAAAAATCCTCACCTTCAACGTTCCCACAAACGCATGAATATCCTTTTGTGGCTTCTCCGCATAGACCTCACAATTCAACTCCATAATATCAGCTTCGTTAGGCAAGTGCTGGGTGTACGGTACCGGTATCCGCAGCTTCCAATCCGTCTCACCGTCGAGTTGGTCCGTTCGAATGAAGCATGCGCCCGACTTGTCCGTTGTTCGCAGCAGCACGACGTCGGCAGGCACACGACGGTCTTTGTGCATTATGATGACGTCACCGACCTGGAAAATGATAATTTTGA</canonical>
            <polymorphic>TTGAACCATTTTTTACAGAATTTTCAGCACATTTTTCGGTTCAAAAACCACCTCACCTTTCATGACAACCATGACTGAGGAGAGCATCAACACAAAGATAAACAAGAGTTTCGTCAAATTGTTCACTTCCAAATCGAGCAGTCCAACCTTGCTCTCCGGCAGTGTTGTATTCATCACAGAACGCGTTTCACGTCCAGTGTAGACGACGATTCCGACGGCGGTTCCCGATGCGACTACCGTATTCGCCCAGAGTACATTCTCAACGTTCAGCGAGCCATCTTGGACACTATCGTCGACGGTGATCTGCATAAAATTCAAGGTTTCTGGTTTCCATAGATATGAGAATTTTGAAAAATCCACAAGTTACAATTTTTAGACTCTTCAAAGTTTTAGATTCTGAAATTGGAATGGCCCTCACACTGCCCGTTTTGACCTAAATTATCTCGGTTACTATTAGAGATATCAAAAGTGTGTCAACTGATAAAATATTGCTGATAATRTGATAAACATTTTATCAGTTGACAACTTTTTGATATCTCTGATAGGAACTGAGATAAATTGGCTCAAAAATCAAAGTTAGGGGGCCCTTCTATTACAGGTTTTCAGGTATTTTAGGAAAAGTTTTTTTTTCCAAATTTTTGGAATGTTGGATGTTCTGGAATTCTTCGATTTCTAGATTCCAAAATTCTACAAATCTGAAAATTTCGATTTTTCTTAAAAATCCTCACCTTCAACGTTCCCACAAACGCATGAATATCCTTTTGTGGCTTCTCCGCATAGACCTCACAATTCAACTCCATAATATCAGCTTCGTTAGGCAAGTGCTGGGTGTACGGTACCGGTATCCGCAGCTTCCAATCCGTCTCACCGTCGAGTTGGTCCGTTCGAATGAAGCATGCGCCCGACTTGTCCGTTGTTCGCAGCAGCACGACGTCGGCAGGCACACGACGGTCTTTGTGCATTATGATGACGTCACCGACCTGGAAAATGATAATTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>225 87 61 58 58 52 39 38 37 36 33 29 29 25 24 21 20 16 15 15 15 14 14 12 9 7 5 2 2 2</canonical_bands>
                <polymorphic_bands>254 87 61 58 58 52 39 38 37 36 33 29 25 24 21 20 16 15 15 15 14 14 12 9 7 5 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAAAAATCCACAAGTTACAAT</pcr_primer_p1>
		<pcr_primer_p2>AACATCCAACATTCCAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>308</pcr_amplicon_size>
		<canonical_amplicon>TTGAAAAATCCACAAGTTACAATTTTTAGACTCTTCAAAGTTTTAGATTCTGAAATTGGAATGGCCCTCACACTGCCCGTTTTGACCTAAATTATCTCGGTTACTATTAGAGATATCAAAAGTGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACATTTTATCAGTTGACAACTTTTTGATATCTCTGATAGGAACTGAGATAAATTGGCTCAAAAATCAAAGTTAGGGGGCCCTTCTATTACAGGTTTTCAGGTATTTTAGGAAAAGTTTTTTTTTCCAAATTTTTGGAATGTTGGATGTT</canonical_amplicon>
		<polymorphic_amplicon>TTGAAAAATCCACAAGTTACAATTTTTAGACTCTTCAAAGTTTTAGATTCTGAAATTGGAATGGCCCTCACACTGCCCGTTTTGACCTAAATTATCTCGGTTACTATTAGAGATATCAAAAGTGTGTCAACTGATAAAATATTGCTGATAATRTGATAAACATTTTATCAGTTGACAACTTTTTGATATCTCTGATAGGAACTGAGATAAATTGGCTCAAAAATCAAAGTTAGGGGGCCCTTCTATTACAGGTTTTCAGGTATTTTAGGAAAAGTTTTTTTTTCCAAATTTTTGGAATGTTGGATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24465</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>19213</contig_pos>
        <strand></strand>
        <context>gctcaaaaat[C/G]aaagttaggg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACAACTTTTTGATATCTCTGATAGGAACTGAGATAAATTGGCTCAAAAAT</left_flank>
        <right_flank>AAAGTTAGGGGGCCCTTCTATTACAGGTTTTCAGGTATTTTAGGAAAAGT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTGAGGAGAGCATCAACACAAAGATAAACAAGAGTTTCGTCAAATTGTTCACTTCCAAATCGAGCAGTCCAACCTTGCTCTCCGGCAGTGTTGTATTCATCACAGAACGCGTTTCACGTCCAGTGTAGACGACGATTCCGACGGCGGTTCCCGATGCGACTACCGTATTCGCCCAGAGTACATTCTCAACGTTCAGCGAGCCATCTTGGACACTATCGTCGACGGTGATCTGCATAAAATTCAAGGTTTCTGGTTTCCATAGATATGAGAATTTTGAAAAATCCACAAGTTACAATTTTTAGACTCTTCAAAGTTTTAGATTCTGAAATTGGAATGGCCCTCACACTGCCCGTTTTGACCTAAATTATCTCGGTTACTATTAGAGATATCAAAAGTGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACATTTTATCAGTTGACAACTTTTTGATATCTCTGATAGGAACTGAGATAAATTGGCTCAAAAATCAAAGTTAGGGGGCCCTTCTATTACAGGTTTTCAGGTATTTTAGGAAAAGTTTTTTTTTCCAAATTTTTGGAATGTTGGATGTTCTGGAATTCTTCGATTTCTAGATTCCAAAATTCTACAAATCTGAAAATTTCGATTTTTCTTAAAAATCCTCACCTTCAACGTTCCCACAAACGCATGAATATCCTTTTGTGGCTTCTCCGCATAGACCTCACAATTCAACTCCATAATATCAGCTTCGTTAGGCAAGTGCTGGGTGTACGGTACCGGTATCCGCAGCTTCCAATCCGTCTCACCGTCGAGTTGGTCCGTTCGAATGAAGCATGCGCCCGACTTGTCCGTTGTTCGCAGCAGCACGACGTCGGCAGGCACACGACGGTCTTTGTGCATTATGATGACGTCACCGACCTGGAAAATGATAATTTTGAAGGGATTGGAATTCTAAAAAAGGCCATTTGACTATGAAAAATGTTTTTCGAGGGGAAAAGTCATATAACGGA</canonical>
            <polymorphic>GACTGAGGAGAGCATCAACACAAAGATAAACAAGAGTTTCGTCAAATTGTTCACTTCCAAATCGAGCAGTCCAACCTTGCTCTCCGGCAGTGTTGTATTCATCACAGAACGCGTTTCACGTCCAGTGTAGACGACGATTCCGACGGCGGTTCCCGATGCGACTACCGTATTCGCCCAGAGTACATTCTCAACGTTCAGCGAGCCATCTTGGACACTATCGTCGACGGTGATCTGCATAAAATTCAAGGTTTCTGGTTTCCATAGATATGAGAATTTTGAAAAATCCACAAGTTACAATTTTTAGACTCTTCAAAGTTTTAGATTCTGAAATTGGAATGGCCCTCACACTGCCCGTTTTGACCTAAATTATCTCGGTTACTATTAGAGATATCAAAAGTGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACATTTTATCAGTTGACAACTTTTTGATATCTCTGATAGGAACTGAGATAAATTGGCTCAAAAATSAAAGTTAGGGGGCCCTTCTATTACAGGTTTTCAGGTATTTTAGGAAAAGTTTTTTTTTCCAAATTTTTGGAATGTTGGATGTTCTGGAATTCTTCGATTTCTAGATTCCAAAATTCTACAAATCTGAAAATTTCGATTTTTCTTAAAAATCCTCACCTTCAACGTTCCCACAAACGCATGAATATCCTTTTGTGGCTTCTCCGCATAGACCTCACAATTCAACTCCATAATATCAGCTTCGTTAGGCAAGTGCTGGGTGTACGGTACCGGTATCCGCAGCTTCCAATCCGTCTCACCGTCGAGTTGGTCCGTTCGAATGAAGCATGCGCCCGACTTGTCCGTTGTTCGCAGCAGCACGACGTCGGCAGGCACACGACGGTCTTTGTGCATTATGATGACGTCACCGACCTGGAAAATGATAATTTTGAAGGGATTGGAATTCTAAAAAAGGCCATTTGACTATGAAAAATGTTTTTCGAGGGGAAAAGTCATATAACGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAAAAATCCACAAGTTACAAT</pcr_primer_p1>
		<pcr_primer_p2>AACATCCAACATTCCAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>308</pcr_amplicon_size>
		<canonical_amplicon>TTGAAAAATCCACAAGTTACAATTTTTAGACTCTTCAAAGTTTTAGATTCTGAAATTGGAATGGCCCTCACACTGCCCGTTTTGACCTAAATTATCTCGGTTACTATTAGAGATATCAAAAGTGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACATTTTATCAGTTGACAACTTTTTGATATCTCTGATAGGAACTGAGATAAATTGGCTCAAAAATCAAAGTTAGGGGGCCCTTCTATTACAGGTTTTCAGGTATTTTAGGAAAAGTTTTTTTTTCCAAATTTTTGGAATGTTGGATGTT</canonical_amplicon>
		<polymorphic_amplicon>TTGAAAAATCCACAAGTTACAATTTTTAGACTCTTCAAAGTTTTAGATTCTGAAATTGGAATGGCCCTCACACTGCCCGTTTTGACCTAAATTATCTCGGTTACTATTAGAGATATCAAAAGTGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACATTTTATCAGTTGACAACTTTTTGATATCTCTGATAGGAACTGAGATAAATTGGCTCAAAAATSAAAGTTAGGGGGCCCTTCTATTACAGGTTTTCAGGTATTTTAGGAAAAGTTTTTTTTTCCAAATTTTTGGAATGTTGGATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24466</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>19245</contig_pos>
        <strand></strand>
        <context>tacaggtttt[C/A]aggtATTTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATAAATTGGCTCAAAAATCAAAGTTAGGGGGCCCTTCTATTACAGGTTTT</left_flank>
        <right_flank>AGGTATTTTAGGAAAAGTTTTTTTTTCCAAATTTTTGGAATGTTGGATGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGTTTCGTCAAATTGTTCACTTCCAAATCGAGCAGTCCAACCTTGCTCTCCGGCAGTGTTGTATTCATCACAGAACGCGTTTCACGTCCAGTGTAGACGACGATTCCGACGGCGGTTCCCGATGCGACTACCGTATTCGCCCAGAGTACATTCTCAACGTTCAGCGAGCCATCTTGGACACTATCGTCGACGGTGATCTGCATAAAATTCAAGGTTTCTGGTTTCCATAGATATGAGAATTTTGAAAAATCCACAAGTTACAATTTTTAGACTCTTCAAAGTTTTAGATTCTGAAATTGGAATGGCCCTCACACTGCCCGTTTTGACCTAAATTATCTCGGTTACTATTAGAGATATCAAAAGTGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACATTTTATCAGTTGACAACTTTTTGATATCTCTGATAGGAACTGAGATAAATTGGCTCAAAAATCAAAGTTAGGGGGCCCTTCTATTACAGGTTTTCAGGTATTTTAGGAAAAGTTTTTTTTTCCAAATTTTTGGAATGTTGGATGTTCTGGAATTCTTCGATTTCTAGATTCCAAAATTCTACAAATCTGAAAATTTCGATTTTTCTTAAAAATCCTCACCTTCAACGTTCCCACAAACGCATGAATATCCTTTTGTGGCTTCTCCGCATAGACCTCACAATTCAACTCCATAATATCAGCTTCGTTAGGCAAGTGCTGGGTGTACGGTACCGGTATCCGCAGCTTCCAATCCGTCTCACCGTCGAGTTGGTCCGTTCGAATGAAGCATGCGCCCGACTTGTCCGTTGTTCGCAGCAGCACGACGTCGGCAGGCACACGACGGTCTTTGTGCATTATGATGACGTCACCGACCTGGAAAATGATAATTTTGAAGGGATTGGAATTCTAAAAAAGGCCATTTGACTATGAAAAATGTTTTTCGAGGGGAAAAGTCATATAACGGACCTAAAAATGCCAAAAATGGGCCCAAATTGAG</canonical>
            <polymorphic>AGAGTTTCGTCAAATTGTTCACTTCCAAATCGAGCAGTCCAACCTTGCTCTCCGGCAGTGTTGTATTCATCACAGAACGCGTTTCACGTCCAGTGTAGACGACGATTCCGACGGCGGTTCCCGATGCGACTACCGTATTCGCCCAGAGTACATTCTCAACGTTCAGCGAGCCATCTTGGACACTATCGTCGACGGTGATCTGCATAAAATTCAAGGTTTCTGGTTTCCATAGATATGAGAATTTTGAAAAATCCACAAGTTACAATTTTTAGACTCTTCAAAGTTTTAGATTCTGAAATTGGAATGGCCCTCACACTGCCCGTTTTGACCTAAATTATCTCGGTTACTATTAGAGATATCAAAAGTGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACATTTTATCAGTTGACAACTTTTTGATATCTCTGATAGGAACTGAGATAAATTGGCTCAAAAATCAAAGTTAGGGGGCCCTTCTATTACAGGTTTTMAGGTATTTTAGGAAAAGTTTTTTTTTCCAAATTTTTGGAATGTTGGATGTTCTGGAATTCTTCGATTTCTAGATTCCAAAATTCTACAAATCTGAAAATTTCGATTTTTCTTAAAAATCCTCACCTTCAACGTTCCCACAAACGCATGAATATCCTTTTGTGGCTTCTCCGCATAGACCTCACAATTCAACTCCATAATATCAGCTTCGTTAGGCAAGTGCTGGGTGTACGGTACCGGTATCCGCAGCTTCCAATCCGTCTCACCGTCGAGTTGGTCCGTTCGAATGAAGCATGCGCCCGACTTGTCCGTTGTTCGCAGCAGCACGACGTCGGCAGGCACACGACGGTCTTTGTGCATTATGATGACGTCACCGACCTGGAAAATGATAATTTTGAAGGGATTGGAATTCTAAAAAAGGCCATTTGACTATGAAAAATGTTTTTCGAGGGGAAAAGTCATATAACGGACCTAAAAATGCCAAAAATGGGCCCAAATTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAAAAATCCACAAGTTACAAT</pcr_primer_p1>
		<pcr_primer_p2>AACATCCAACATTCCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>308</pcr_amplicon_size>
		<canonical_amplicon>TTGAAAAATCCACAAGTTACAATTTTTAGACTCTTCAAAGTTTTAGATTCTGAAATTGGAATGGCCCTCACACTGCCCGTTTTGACCTAAATTATCTCGGTTACTATTAGAGATATCAAAAGTGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACATTTTATCAGTTGACAACTTTTTGATATCTCTGATAGGAACTGAGATAAATTGGCTCAAAAATCAAAGTTAGGGGGCCCTTCTATTACAGGTTTTCAGGTATTTTAGGAAAAGTTTTTTTTTCCAAATTTTTGGAATGTTGGATGTT</canonical_amplicon>
		<polymorphic_amplicon>TTGAAAAATCCACAAGTTACAATTTTTAGACTCTTCAAAGTTTTAGATTCTGAAATTGGAATGGCCCTCACACTGCCCGTTTTGACCTAAATTATCTCGGTTACTATTAGAGATATCAAAAGTGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACATTTTATCAGTTGACAACTTTTTGATATCTCTGATAGGAACTGAGATAAATTGGCTCAAAAATCAAAGTTAGGGGGCCCTTCTATTACAGGTTTTMAGGTATTTTAGGAAAAGTTTTTTTTTCCAAATTTTTGGAATGTTGGATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24467</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>83428</contig_pos>
        <strand>+</strand>
        <context>AATAGGGCAT[G/T]TTTGAAGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGGTGCAAATCGGCTCATTTTGAGTGGATTTTGGCTCAAAAATAGGGCAT</left_flank>
        <right_flank>TTTGAAGAAAATTTTTAAGTTTTCCAGAAGTTTATGTGAGACTTCTGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCTCCTGGAATTCAAACTGTTGACCTACCTAAAAATGCGGGCAGTTAACATTAACAACTTTGTTTTATTTTGTGATGTTGTCTTTATGCTGATCACTTGTCACTTCCCATTCTTTCTCCACTGTTTTCCTTCTTTTTTTGTCCCATTTCTTTTCCCCAACGCGGCACTCTCTCTGACTCACAGAAGTGATGCAAAACTCTGAAGAAAAAAAACGATGTGGCGCGACGACCGGCGGCACAGAACGATTGGGGAAGAAGAGATGAAAAAGAAAGCCCCATCGGACACTCTTCTCTCTCTCTCTCTCACTCACAAACACACAAAAATGTTTTTGTGAGAAAGAGAGAGAAGGAAGAGTTCTTTCAGTATTGCCCCCTGCTGCCGTCGTTTTCAATAGGTCCCCTGGCTTTCGTTTTGTTTTTATCGCCCAGGATTTTCGGAGGATTTGCGCGGTGCAAATCGGCTCATTTTGAGTGGATTTTGGCTCAAAAATAGGGCATTTTTGAAGAAAATTTTTAAGTTTTCCAGAAGTTTATGTGAGACTTCTGAAGATCCTATTTCAGGGGATTTTAAGGCGATTTTCAGTAAAACTTCGAAATTTTTTACAAAAATTGAGATATTCTTCTCGAATTCGTGTGATTTTCACATGAAATTCACCGAAAAAATCGGTGATCGCTGTCTGCGAAAATGGCGAAAAAGCGGCCGAAAAACTGATAAAAGGAGACAGAAAAATGATAGTAAATTGTCATTTTGCTATTAAAAAAAGCGCTTTTTTATCAATTTTTAGGCCGAAATTCCCAAATTCCCCCGATTTTTCCCTATTTTTCGGCCAAAATTCACATTTTTTCAGGATTTTTCAAGATAAATTCAGAATTCTCCCGATTTTTCGGGCAAAATTCCGAATTTTCTCCGATTTTTTATCGATTTTTCGTCCGATTTTCTCGGATTTTCCGACCAAAATTTTCAAATTCCCCCGAGTTCCGTCAGATTTTTCGACCAAA</canonical>
            <polymorphic>GATCTCCTGGAATTCAAACTGTTGACCTACCTAAAAATGCGGGCAGTTAACATTAACAACTTTGTTTTATTTTGTGATGTTGTCTTTATGCTGATCACTTGTCACTTCCCATTCTTTCTCCACTGTTTTCCTTCTTTTTTTGTCCCATTTCTTTTCCCCAACGCGGCACTCTCTCTGACTCACAGAAGTGATGCAAAACTCTGAAGAAAAAAAACGATGTGGCGCGACGACCGGCGGCACAGAACGATTGGGGAAGAAGAGATGAAAAAGAAAGCCCCATCGGACACTCTTCTCTCTCTCTCTCTCACTCACAAACACACAAAAATGTTTTTGTGAGAAAGAGAGAGAAGGAAGAGTTCTTTCAGTATTGCCCCCTGCTGCCGTCGTTTTCAATAGGTCCCCTGGCTTTCGTTTTGTTTTTATCGCCCAGGATTTTCGGAGGATTTGCGCGGTGCAAATCGGCTCATTTTGAGTGGATTTTGGCTCAAAAATAGGGCATKTTTGAAGAAAATTTTTAAGTTTTCCAGAAGTTTATGTGAGACTTCTGAAGATCCTATTTCAGGGGATTTTAAGGCGATTTTCAGTAAAACTTCGAAATTTTTTACAAAAATTGAGATATTCTTCTCGAATTCGTGTGATTTTCACATGAAATTCACCGAAAAAATCGGTGATCGCTGTCTGCGAAAATGGCGAAAAAGCGGCCGAAAAACTGATAAAAGGAGACAGAAAAATGATAGTAAATTGTCATTTTGCTATTAAAAAAAGCGCTTTTTTATCAATTTTTAGGCCGAAATTCCCAAATTCCCCCGATTTTTCCCTATTTTTCGGCCAAAATTCACATTTTTTCAGGATTTTTCAAGATAAATTCAGAATTCTCCCGATTTTTCGGGCAAAATTCCGAATTTTCTCCGATTTTTTATCGATTTTTCGTCCGATTTTCTCGGATTTTCCGACCAAAATTTTCAAATTCCCCCGAGTTCCGTCAGATTTTTCGACCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCACTCACAAACACACAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GGATCTTCAGAAGTCTCACATAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCACTCACAAACACACAAAAATGTTTTTGTGAGAAAGAGAGAGAAGGAAGAGTTCTTTCAGTATTGCCCCCTGCTGCCGTCGTTTTCAATAGGTCCCCTGGCTTTCGTTTTGTTTTTATCGCCCAGGATTTTCGGAGGATTTGCGCGGTGCAAATCGGCTCATTTTGAGTGGATTTTGGCTCAAAAATAGGGCATTTTTGAAGAAAATTTTTAAGTTTTCCAGAAGTTTATGTGAGACTTCTGAAGATCC</canonical_amplicon>
		<polymorphic_amplicon>TCACTCACAAACACACAAAAATGTTTTTGTGAGAAAGAGAGAGAAGGAAGAGTTCTTTCAGTATTGCCCCCTGCTGCCGTCGTTTTCAATAGGTCCCCTGGCTTTCGTTTTGTTTTTATCGCCCAGGATTTTCGGAGGATTTGCGCGGTGCAAATCGGCTCATTTTGAGTGGATTTTGGCTCAAAAATAGGGCATKTTTGAAGAAAATTTTTAAGTTTTCCAGAAGTTTATGTGAGACTTCTGAAGATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24468</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>83696</contig_pos>
        <strand>+</strand>
        <context>AAAAAAAGCG[C/T]TTTTTTWTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGAGACAGAAAAATGATAGTAAATTGTCATTTTGCTATTAAAAAAAGCG</left_flank>
        <right_flank>TTTTTTATCAATTTTTAGGCCGAAATTCCCAAATTCCCCCGATTTTTCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAAGCCCCATCGGACACTCTTCTCTCTCTCTCTCTCACTCACAAACACACAAAAATGTTTTTGTGAGAAAGAGAGAGAAGGAAGAGTTCTTTCAGTATTGCCCCCTGCTGCCGTCGTTTTCAATAGGTCCCCTGGCTTTCGTTTTGTTTTTATCGCCCAGGATTTTCGGAGGATTTGCGCGGTGCAAATCGGCTCATTTTGAGTGGATTTTGGCTCAAAAATAGGGCATTTTTGAAGAAAATTTTTAAGTTTTCCAGAAGTTTATGTGAGACTTCTGAAGATCCTATTTCAGGGGATTTTAAGGCGATTTTCAGTAAAACTTCGAAATTTTTTACAAAAATTGAGATATTCTTCTCGAATTCGTGTGATTTTCACATGAAATTCACCGAAAAAATCGGTGATCGCTGTCTGCGAAAATGGCGAAAAAGCGGCCGAAAAACTGATAAAAGGAGACAGAAAAATGATAGTAAATTGTCATTTTGCTATTAAAAAAAGCGCTTTTTTATCAATTTTTAGGCCGAAATTCCCAAATTCCCCCGATTTTTCCCTATTTTTCGGCCAAAATTCACATTTTTTCAGGATTTTTCAAGATAAATTCAGAATTCTCCCGATTTTTCGGGCAAAATTCCGAATTTTCTCCGATTTTTTATCGATTTTTCGTCCGATTTTCTCGGATTTTCCGACCAAAATTTTCAAATTCCCCCGAGTTCCGTCAGATTTTTCGACCAAACTTCCGAATTTTCTCCGATTTGTTTCACGAATTTCGGCCGAAATTCAAATTTTTTCACGATTTTTCTCCGATTTTTTCGGATTTTTCGACAAAATGTTAAAATTTTCCCGATTTTTCGAGAAAAATTCCAAAAATTTTCAGAATTTTTCTCCGATTTTTCTCTGATTTTTAAGCCGAAATTCTGAATTTTTCGTCCGATTTTCTCGGATTTTTCGACCAAAATTCCAAAATTTCGCCGATTTTTCCCGTTTTATCGGCCAAAATTTAA</canonical>
            <polymorphic>AGAAAGCCCCATCGGACACTCTTCTCTCTCTCTCTCTCACTCACAAACACACAAAAATGTTTTTGTGAGAAAGAGAGAGAAGGAAGAGTTCTTTCAGTATTGCCCCCTGCTGCCGTCGTTTTCAATAGGTCCCCTGGCTTTCGTTTTGTTTTTATCGCCCAGGATTTTCGGAGGATTTGCGCGGTGCAAATCGGCTCATTTTGAGTGGATTTTGGCTCAAAAATAGGGCATTTTTGAAGAAAATTTTTAAGTTTTCCAGAAGTTTATGTGAGACTTCTGAAGATCCTATTTCAGGGGATTTTAAGGCGATTTTCAGTAAAACTTCGAAATTTTTTACAAAAATTGAGATATTCTTCTCGAATTCGTGTGATTTTCACATGAAATTCACCGAAAAAATCGGTGATCGCTGTCTGCGAAAATGGCGAAAAAGCGGCCGAAAAACTGATAAAAGGAGACAGAAAAATGATAGTAAATTGTCATTTTGCTATTAAAAAAAGCGYTTTTTTATCAATTTTTAGGCCGAAATTCCCAAATTCCCCCGATTTTTCCCTATTTTTCGGCCAAAATTCACATTTTTTCAGGATTTTTCAAGATAAATTCAGAATTCTCCCGATTTTTCGGGCAAAATTCCGAATTTTCTCCGATTTTTTATCGATTTTTCGTCCGATTTTCTCGGATTTTCCGACCAAAATTTTCAAATTCCCCCGAGTTCCGTCAGATTTTTCGACCAAACTTCCGAATTTTCTCCGATTTGTTTCACGAATTTCGGCCGAAATTCAAATTTTTTCACGATTTTTCTCCGATTTTTTCGGATTTTTCGACAAAATGTTAAAATTTTCCCGATTTTTCGAGAAAAATTCCAAAAATTTTCAGAATTTTTCTCCGATTTTTCTCTGATTTTTAAGCCGAAATTCTGAATTTTTCGTCCGATTTTCTCGGATTTTTCGACCAAAATTCCAAAATTTCGCCGATTTTTCCCGTTTTATCGGCCAAAATTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCGCT</site>
                <isoschizomers>
                    <enzyme>AfeI</enzyme>
                    <enzyme>Aor51HI</enzyme>
                    <enzyme>Eco47III</enzyme>
                    <enzyme>FunI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 318 181</canonical_bands>
                <polymorphic_bands>819 181</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCTCGAATTCGTGTGATT</pcr_primer_p1>
		<pcr_primer_p2>TTTATCTTGAAAAATCCTGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTTCTCGAATTCGTGTGATTTTCACATGAAATTCACCGAAAAAATCGGTGATCGCTGTCTGCGAAAATGGCGAAAAAGCGGCCGAAAAACTGATAAAAGGAGACAGAAAAATGATAGTAAATTGTCATTTTGCTATTAAAAAAAGCGCTTTTTTATCAATTTTTAGGCCGAAATTCCCAAATTCCCCCGATTTTTCCCTATTTTTCGGCCAAAATTCACATTTTTTCAGGATTTTTCAAGATAAA</canonical_amplicon>
		<polymorphic_amplicon>CTTCTCGAATTCGTGTGATTTTCACATGAAATTCACCGAAAAAATCGGTGATCGCTGTCTGCGAAAATGGCGAAAAAGCGGCCGAAAAACTGATAAAAGGAGACAGAAAAATGATAGTAAATTGTCATTTTGCTATTAAAAAAAGCGYTTTTTTATCAATTTTTAGGCCGAAATTCCCAAATTCCCCCGATTTTTCCCTATTTTTCGGCCAAAATTCACATTTTTTCAGGATTTTTCAAGATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24469</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>83703</contig_pos>
        <strand>+</strand>
        <context>GCGYTTTTTT[A/T]TCAATTTTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAAAAATGATAGTAAATTGTCATTTTGCTATTAAAAAAAGCGCTTTTTT</left_flank>
        <right_flank>TCAATTTTTAGGCCGAAATTCCCAAATTCCCCCGATTTTTCCCTATTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCATCGGACACTCTTCTCTCTCTCTCTCTCACTCACAAACACACAAAAATGTTTTTGTGAGAAAGAGAGAGAAGGAAGAGTTCTTTCAGTATTGCCCCCTGCTGCCGTCGTTTTCAATAGGTCCCCTGGCTTTCGTTTTGTTTTTATCGCCCAGGATTTTCGGAGGATTTGCGCGGTGCAAATCGGCTCATTTTGAGTGGATTTTGGCTCAAAAATAGGGCATTTTTGAAGAAAATTTTTAAGTTTTCCAGAAGTTTATGTGAGACTTCTGAAGATCCTATTTCAGGGGATTTTAAGGCGATTTTCAGTAAAACTTCGAAATTTTTTACAAAAATTGAGATATTCTTCTCGAATTCGTGTGATTTTCACATGAAATTCACCGAAAAAATCGGTGATCGCTGTCTGCGAAAATGGCGAAAAAGCGGCCGAAAAACTGATAAAAGGAGACAGAAAAATGATAGTAAATTGTCATTTTGCTATTAAAAAAAGCGCTTTTTTATCAATTTTTAGGCCGAAATTCCCAAATTCCCCCGATTTTTCCCTATTTTTCGGCCAAAATTCACATTTTTTCAGGATTTTTCAAGATAAATTCAGAATTCTCCCGATTTTTCGGGCAAAATTCCGAATTTTCTCCGATTTTTTATCGATTTTTCGTCCGATTTTCTCGGATTTTCCGACCAAAATTTTCAAATTCCCCCGAGTTCCGTCAGATTTTTCGACCAAACTTCCGAATTTTCTCCGATTTGTTTCACGAATTTCGGCCGAAATTCAAATTTTTTCACGATTTTTCTCCGATTTTTTCGGATTTTTCGACAAAATGTTAAAATTTTCCCGATTTTTCGAGAAAAATTCCAAAAATTTTCAGAATTTTTCTCCGATTTTTCTCTGATTTTTAAGCCGAAATTCTGAATTTTTCGTCCGATTTTCTCGGATTTTTCGACCAAAATTCCAAAATTTCGCCGATTTTTCCCGTTTTATCGGCCAAAATTTAAATTTTTT</canonical>
            <polymorphic>CCCATCGGACACTCTTCTCTCTCTCTCTCTCACTCACAAACACACAAAAATGTTTTTGTGAGAAAGAGAGAGAAGGAAGAGTTCTTTCAGTATTGCCCCCTGCTGCCGTCGTTTTCAATAGGTCCCCTGGCTTTCGTTTTGTTTTTATCGCCCAGGATTTTCGGAGGATTTGCGCGGTGCAAATCGGCTCATTTTGAGTGGATTTTGGCTCAAAAATAGGGCATTTTTGAAGAAAATTTTTAAGTTTTCCAGAAGTTTATGTGAGACTTCTGAAGATCCTATTTCAGGGGATTTTAAGGCGATTTTCAGTAAAACTTCGAAATTTTTTACAAAAATTGAGATATTCTTCTCGAATTCGTGTGATTTTCACATGAAATTCACCGAAAAAATCGGTGATCGCTGTCTGCGAAAATGGCGAAAAAGCGGCCGAAAAACTGATAAAAGGAGACAGAAAAATGATAGTAAATTGTCATTTTGCTATTAAAAAAAGCGCTTTTTTWTCAATTTTTAGGCCGAAATTCCCAAATTCCCCCGATTTTTCCCTATTTTTCGGCCAAAATTCACATTTTTTCAGGATTTTTCAAGATAAATTCAGAATTCTCCCGATTTTTCGGGCAAAATTCCGAATTTTCTCCGATTTTTTATCGATTTTTCGTCCGATTTTCTCGGATTTTCCGACCAAAATTTTCAAATTCCCCCGAGTTCCGTCAGATTTTTCGACCAAACTTCCGAATTTTCTCCGATTTGTTTCACGAATTTCGGCCGAAATTCAAATTTTTTCACGATTTTTCTCCGATTTTTTCGGATTTTTCGACAAAATGTTAAAATTTTCCCGATTTTTCGAGAAAAATTCCAAAAATTTTCAGAATTTTTCTCCGATTTTTCTCTGATTTTTAAGCCGAAATTCTGAATTTTTCGTCCGATTTTCTCGGATTTTTCGACCAAAATTCCAAAATTTCGCCGATTTTTCCCGTTTTATCGGCCAAAATTTAAATTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTCGAATTCGTGTGATT</pcr_primer_p1>
		<pcr_primer_p2>TTTATCTTGAAAAATCCTGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTTCTCGAATTCGTGTGATTTTCACATGAAATTCACCGAAAAAATCGGTGATCGCTGTCTGCGAAAATGGCGAAAAAGCGGCCGAAAAACTGATAAAAGGAGACAGAAAAATGATAGTAAATTGTCATTTTGCTATTAAAAAAAGCGCTTTTTTATCAATTTTTAGGCCGAAATTCCCAAATTCCCCCGATTTTTCCCTATTTTTCGGCCAAAATTCACATTTTTTCAGGATTTTTCAAGATAAA</canonical_amplicon>
		<polymorphic_amplicon>CTTCTCGAATTCGTGTGATTTTCACATGAAATTCACCGAAAAAATCGGTGATCGCTGTCTGCGAAAATGGCGAAAAAGCGGCCGAAAAACTGATAAAAGGAGACAGAAAAATGATAGTAAATTGTCATTTTGCTATTAAAAAAAGCGCTTTTTTWTCAATTTTTAGGCCGAAATTCCCAAATTCCCCCGATTTTTCCCTATTTTTCGGCCAAAATTCACATTTTTTCAGGATTTTTCAAGATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24470</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>85118</contig_pos>
        <strand>+</strand>
        <context>TGAGAAATTG[A/T]AAAAAAATAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGATCGATTTTTTTGTAAAAATTCACAAAATCGGAAATTTTGAGAAATTG</left_flank>
        <right_flank>AAAAAAATATTTTGTAAAAATTCAATTTTTTTGGAATTTACCAAATTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTATGTTTTCGTTTTTTCTTTTTTTTTTGAAAAAAAATGTTGAAAATCAGAAAATAACGCCCAAGTTGTGTCATATGATGCAATTGATATTTTTAGCGATTTTTGCAATTTTTTGACATCAAAAATTAATTGGGATAATTATTGGTCTTGAAGAATCTTTATTCGAAAGCAAATCTGAAAATGCGCCAAATGCGCTCCAATGAGAATTTTCATTTTTCGCCGAAATTTTGCATTTTTTGTGAAAATTTCGAAAAAATTGCTCAAATCGCTGTATTAGAGAGTCGTAAAAGATTAAAAATTGGTACAAGTATTTTGCTGGAAATTTGAAAATTTTCGAAAAAAATTTTTACATTTTTGACAGAAATTTTTTTCTAAATACAAAAAATCGGAAATTTCGAAAAATTCGAGAATTTTGCATCTTTAAGTTGTCTGGAATTTTCAATTTTAGATCGATTTTTTTGTAAAAATTCACAAAATCGGAAATTTTGAGAAATTGAAAAAAAATATTTTGTAAAAATTCAATTTTTTTGGAATTTACCAAATTTTCTCAAATCGCCTGAAACGGTTAATTTCAGATCGATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGATTTTTTTTCCCAAAATATCTCAAAATCGCTAGATTGAATTTTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAATTCCTGTGATTTGCAAATTTTTAAGCTCAAAATCAGCCAAGTGACCGGAAAATTGGAATTTTTCGGAATTTTTTTTGTTGATTTTTGTGTAATTTTTGACCCCAAACTGATCAGTAGTATCCCCTCTTATCTCTTCTTCCTCTTATCATGCTTATCACTTTGAAAAAGTTTTCAAAGAGAAAAAGAGAAAACATTTTTCAAAAATCACTTTTCTCTCTCCTCTTCCACCCCATAAATCGATTCGAAATTGGCCGTTTCTTTGTCCTTTTTTTGACCGTGGTCGACCGGAATTCGG</canonical>
            <polymorphic>ACTTTATGTTTTCGTTTTTTCTTTTTTTTTTGAAAAAAAATGTTGAAAATCAGAAAATAACGCCCAAGTTGTGTCATATGATGCAATTGATATTTTTAGCGATTTTTGCAATTTTTTGACATCAAAAATTAATTGGGATAATTATTGGTCTTGAAGAATCTTTATTCGAAAGCAAATCTGAAAATGCGCCAAATGCGCTCCAATGAGAATTTTCATTTTTCGCCGAAATTTTGCATTTTTTGTGAAAATTTCGAAAAAATTGCTCAAATCGCTGTATTAGAGAGTCGTAAAAGATTAAAAATTGGTACAAGTATTTTGCTGGAAATTTGAAAATTTTCGAAAAAAATTTTTACATTTTTGACAGAAATTTTTTTCTAAATACAAAAAATCGGAAATTTCGAAAAATTCGAGAATTTTGCATCTTTAAGTTGTCTGGAATTTTCAATTTTAGATCGATTTTTTTGTAAAAATTCACAAAATCGGAAATTTTGAGAAATTGWAAAAAAATATTTTGTAAAAATTCAATTTTTTTGGAATTTACCAAATTTTCTCAAATCGCCTGAAACGGTTAATTTCAGATCGATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGATTTTTTTTCCCAAAATATCTCAAAATCGCTAGATTGAATTTTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAATTCCTGTGATTTGCAAATTTTTAAGCTCAAAATCAGCCAAGTGACCGGAAAATTGGAATTTTTCGGAATTTTTTTTGTTGATTTTTGTGTAATTTTTGACCCCAAACTGATCAGTAGTATCCCCTCTTATCTCTTCTTCCTCTTATCATGCTTATCACTTTGAAAAAGTTTTCAAAGAGAAAAAGAGAAAACATTTTTCAAAAATCACTTTTCTCTCTCCTCTTCCACCCCATAAATCGATTCGAAATTGGCCGTTTCTTTGTCCTTTTTTTGACCGTGGTCGACCGGAATTCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGCATCTTTAAGTTGTCTG</pcr_primer_p1>
		<pcr_primer_p2>TTCAATCTAGCGATTTTGAGATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGCATCTTTAAGTTGTCTGGAATTTTCAATTTTAGATCGATTTTTTTGTAAAAATTCACAAAATCGGAAATTTTGAGAAATTGAAAAAAAATATTTTGTAAAAATTCAATTTTTTTGGAATTTACCAAATTTTCTCAAATCGCCTGAAACGGTTAATTTCAGATCGATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGATTTTTTTTCCCAAAATATCTCAAAATCGCTAGATTGAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGCATCTTTAAGTTGTCTGGAATTTTCAATTTTAGATCGATTTTTTTGTAAAAATTCACAAAATCGGAAATTTTGAGAAATTGWAAAAAAATATTTTGTAAAAATTCAATTTTTTTGGAATTTACCAAATTTTCTCAAATCGCCTGAAACGGTTAATTTCAGATCGATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGATTTTTTTTCCCAAAATATCTCAAAATCGCTAGATTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24471</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>85196</contig_pos>
        <strand>+</strand>
        <context>GTTAATTTCA[A/G]ATCMATTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTGGAATTTACCAAATTTTCTCAAATCGCCTGAAACGGTTAATTTCA</left_flank>
        <right_flank>ATCGATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGATTTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATGCAATTGATATTTTTAGCGATTTTTGCAATTTTTTGACATCAAAAATTAATTGGGATAATTATTGGTCTTGAAGAATCTTTATTCGAAAGCAAATCTGAAAATGCGCCAAATGCGCTCCAATGAGAATTTTCATTTTTCGCCGAAATTTTGCATTTTTTGTGAAAATTTCGAAAAAATTGCTCAAATCGCTGTATTAGAGAGTCGTAAAAGATTAAAAATTGGTACAAGTATTTTGCTGGAAATTTGAAAATTTTCGAAAAAAATTTTTACATTTTTGACAGAAATTTTTTTCTAAATACAAAAAATCGGAAATTTCGAAAAATTCGAGAATTTTGCATCTTTAAGTTGTCTGGAATTTTCAATTTTAGATCGATTTTTTTGTAAAAATTCACAAAATCGGAAATTTTGAGAAATTGAAAAAAAATATTTTGTAAAAATTCAATTTTTTTGGAATTTACCAAATTTTCTCAAATCGCCTGAAACGGTTAATTTCAGATCGATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGATTTTTTTTCCCAAAATATCTCAAAATCGCTAGATTGAATTTTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAATTCCTGTGATTTGCAAATTTTTAAGCTCAAAATCAGCCAAGTGACCGGAAAATTGGAATTTTTCGGAATTTTTTTTGTTGATTTTTGTGTAATTTTTGACCCCAAACTGATCAGTAGTATCCCCTCTTATCTCTTCTTCCTCTTATCATGCTTATCACTTTGAAAAAGTTTTCAAAGAGAAAAAGAGAAAACATTTTTCAAAAATCACTTTTCTCTCTCCTCTTCCACCCCATAAATCGATTCGAAATTGGCCGTTTCTTTGTCCTTTTTTTGACCGTGGTCGACCGGAATTCGGCCTATTTGTCCTCGACCTAAAAAATGGAAATTTGCAGAGCGTCTCGTTTCCAAGCACCCATCATCACCATGGCGTCGA</canonical>
            <polymorphic>TGATGCAATTGATATTTTTAGCGATTTTTGCAATTTTTTGACATCAAAAATTAATTGGGATAATTATTGGTCTTGAAGAATCTTTATTCGAAAGCAAATCTGAAAATGCGCCAAATGCGCTCCAATGAGAATTTTCATTTTTCGCCGAAATTTTGCATTTTTTGTGAAAATTTCGAAAAAATTGCTCAAATCGCTGTATTAGAGAGTCGTAAAAGATTAAAAATTGGTACAAGTATTTTGCTGGAAATTTGAAAATTTTCGAAAAAAATTTTTACATTTTTGACAGAAATTTTTTTCTAAATACAAAAAATCGGAAATTTCGAAAAATTCGAGAATTTTGCATCTTTAAGTTGTCTGGAATTTTCAATTTTAGATCGATTTTTTTGTAAAAATTCACAAAATCGGAAATTTTGAGAAATTGAAAAAAAATATTTTGTAAAAATTCAATTTTTTTGGAATTTACCAAATTTTCTCAAATCGCCTGAAACGGTTAATTTCARATCGATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGATTTTTTTTCCCAAAATATCTCAAAATCGCTAGATTGAATTTTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAATTCCTGTGATTTGCAAATTTTTAAGCTCAAAATCAGCCAAGTGACCGGAAAATTGGAATTTTTCGGAATTTTTTTTGTTGATTTTTGTGTAATTTTTGACCCCAAACTGATCAGTAGTATCCCCTCTTATCTCTTCTTCCTCTTATCATGCTTATCACTTTGAAAAAGTTTTCAAAGAGAAAAAGAGAAAACATTTTTCAAAAATCACTTTTCTCTCTCCTCTTCCACCCCATAAATCGATTCGAAATTGGCCGTTTCTTTGTCCTTTTTTTGACCGTGGTCGACCGGAATTCGGCCTATTTGTCCTCGACCTAAAAAATGGAAATTTGCAGAGCGTCTCGTTTCCAAGCACCCATCATCACCATGGCGTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>372 265 236 127</canonical_bands>
                <polymorphic_bands>372 363 265</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>308 212 152 101 95 91 41</canonical_bands>
                <polymorphic_bands>308 212 152 136 101 91</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGCATCTTTAAGTTGTCTG</pcr_primer_p1>
		<pcr_primer_p2>TTCAATCTAGCGATTTTGAGATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGCATCTTTAAGTTGTCTGGAATTTTCAATTTTAGATCGATTTTTTTGTAAAAATTCACAAAATCGGAAATTTTGAGAAATTGAAAAAAAATATTTTGTAAAAATTCAATTTTTTTGGAATTTACCAAATTTTCTCAAATCGCCTGAAACGGTTAATTTCAGATCGATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGATTTTTTTTCCCAAAATATCTCAAAATCGCTAGATTGAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGCATCTTTAAGTTGTCTGGAATTTTCAATTTTAGATCGATTTTTTTGTAAAAATTCACAAAATCGGAAATTTTGAGAAATTGAAAAAAAATATTTTGTAAAAATTCAATTTTTTTGGAATTTACCAAATTTTCTCAAATCGCCTGAAACGGTTAATTTCARATCGATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGATTTTTTTTCCCAAAATATCTCAAAATCGCTAGATTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24472</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>85200</contig_pos>
        <strand>+</strand>
        <context>ATTTCARATC[A/C]ATTTTTCGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGGAATTTACCAAATTTTCTCAAATCGCCTGAAACGGTTAATTTCAGATC</left_flank>
        <right_flank>ATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGATTTTTTTTCCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAATTGATATTTTTAGCGATTTTTGCAATTTTTTGACATCAAAAATTAATTGGGATAATTATTGGTCTTGAAGAATCTTTATTCGAAAGCAAATCTGAAAATGCGCCAAATGCGCTCCAATGAGAATTTTCATTTTTCGCCGAAATTTTGCATTTTTTGTGAAAATTTCGAAAAAATTGCTCAAATCGCTGTATTAGAGAGTCGTAAAAGATTAAAAATTGGTACAAGTATTTTGCTGGAAATTTGAAAATTTTCGAAAAAAATTTTTACATTTTTGACAGAAATTTTTTTCTAAATACAAAAAATCGGAAATTTCGAAAAATTCGAGAATTTTGCATCTTTAAGTTGTCTGGAATTTTCAATTTTAGATCGATTTTTTTGTAAAAATTCACAAAATCGGAAATTTTGAGAAATTGAAAAAAAATATTTTGTAAAAATTCAATTTTTTTGGAATTTACCAAATTTTCTCAAATCGCCTGAAACGGTTAATTTCAGATCGATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGATTTTTTTTCCCAAAATATCTCAAAATCGCTAGATTGAATTTTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAATTCCTGTGATTTGCAAATTTTTAAGCTCAAAATCAGCCAAGTGACCGGAAAATTGGAATTTTTCGGAATTTTTTTTGTTGATTTTTGTGTAATTTTTGACCCCAAACTGATCAGTAGTATCCCCTCTTATCTCTTCTTCCTCTTATCATGCTTATCACTTTGAAAAAGTTTTCAAAGAGAAAAAGAGAAAACATTTTTCAAAAATCACTTTTCTCTCTCCTCTTCCACCCCATAAATCGATTCGAAATTGGCCGTTTCTTTGTCCTTTTTTTGACCGTGGTCGACCGGAATTCGGCCTATTTGTCCTCGACCTAAAAAATGGAAATTTGCAGAGCGTCTCGTTTCCAAGCACCCATCATCACCATGGCGTCGATTGC</canonical>
            <polymorphic>GCAATTGATATTTTTAGCGATTTTTGCAATTTTTTGACATCAAAAATTAATTGGGATAATTATTGGTCTTGAAGAATCTTTATTCGAAAGCAAATCTGAAAATGCGCCAAATGCGCTCCAATGAGAATTTTCATTTTTCGCCGAAATTTTGCATTTTTTGTGAAAATTTCGAAAAAATTGCTCAAATCGCTGTATTAGAGAGTCGTAAAAGATTAAAAATTGGTACAAGTATTTTGCTGGAAATTTGAAAATTTTCGAAAAAAATTTTTACATTTTTGACAGAAATTTTTTTCTAAATACAAAAAATCGGAAATTTCGAAAAATTCGAGAATTTTGCATCTTTAAGTTGTCTGGAATTTTCAATTTTAGATCGATTTTTTTGTAAAAATTCACAAAATCGGAAATTTTGAGAAATTGAAAAAAAATATTTTGTAAAAATTCAATTTTTTTGGAATTTACCAAATTTTCTCAAATCGCCTGAAACGGTTAATTTCAGATCMATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGATTTTTTTTCCCAAAATATCTCAAAATCGCTAGATTGAATTTTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAATTCCTGTGATTTGCAAATTTTTAAGCTCAAAATCAGCCAAGTGACCGGAAAATTGGAATTTTTCGGAATTTTTTTTGTTGATTTTTGTGTAATTTTTGACCCCAAACTGATCAGTAGTATCCCCTCTTATCTCTTCTTCCTCTTATCATGCTTATCACTTTGAAAAAGTTTTCAAAGAGAAAAAGAGAAAACATTTTTCAAAAATCACTTTTCTCTCTCCTCTTCCACCCCATAAATCGATTCGAAATTGGCCGTTTCTTTGTCCTTTTTTTGACCGTGGTCGACCGGAATTCGGCCTATTTGTCCTCGACCTAAAAAATGGAAATTTGCAGAGCGTCTCGTTTCCAAGCACCCATCATCACCATGGCGTCGATTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>371 362 140 127</canonical_bands>
                <polymorphic_bands>489 371 140</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>280 127 86 85 85 74 63 61 46 39 26 9 8 6 5</canonical_bands>
                <polymorphic_bands>280 135 86 85 85 74 63 61 46 39 26 9 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGCATCTTTAAGTTGTCTG</pcr_primer_p1>
		<pcr_primer_p2>TTCAATCTAGCGATTTTGAGATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGCATCTTTAAGTTGTCTGGAATTTTCAATTTTAGATCGATTTTTTTGTAAAAATTCACAAAATCGGAAATTTTGAGAAATTGAAAAAAAATATTTTGTAAAAATTCAATTTTTTTGGAATTTACCAAATTTTCTCAAATCGCCTGAAACGGTTAATTTCAGATCGATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGATTTTTTTTCCCAAAATATCTCAAAATCGCTAGATTGAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGCATCTTTAAGTTGTCTGGAATTTTCAATTTTAGATCGATTTTTTTGTAAAAATTCACAAAATCGGAAATTTTGAGAAATTGAAAAAAAATATTTTGTAAAAATTCAATTTTTTTGGAATTTACCAAATTTTCTCAAATCGCCTGAAACGGTTAATTTCAGATCMATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGATTTTTTTTCCCAAAATATCTCAAAATCGCTAGATTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24473</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>85240</contig_pos>
        <strand>+</strand>
        <context>TTTTTCGGAT[C/T]TTTTTTCCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTCAGATCGATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGAT</left_flank>
        <right_flank>TTTTTTCCCAAAATATCTCAAAATCGCTAGATTGAATTTTCGAAAATTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAATTAATTGGGATAATTATTGGTCTTGAAGAATCTTTATTCGAAAGCAAATCTGAAAATGCGCCAAATGCGCTCCAATGAGAATTTTCATTTTTCGCCGAAATTTTGCATTTTTTGTGAAAATTTCGAAAAAATTGCTCAAATCGCTGTATTAGAGAGTCGTAAAAGATTAAAAATTGGTACAAGTATTTTGCTGGAAATTTGAAAATTTTCGAAAAAAATTTTTACATTTTTGACAGAAATTTTTTTCTAAATACAAAAAATCGGAAATTTCGAAAAATTCGAGAATTTTGCATCTTTAAGTTGTCTGGAATTTTCAATTTTAGATCGATTTTTTTGTAAAAATTCACAAAATCGGAAATTTTGAGAAATTGAAAAAAAATATTTTGTAAAAATTCAATTTTTTTGGAATTTACCAAATTTTCTCAAATCGCCTGAAACGGTTAATTTCAGATCGATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGATTTTTTTTCCCAAAATATCTCAAAATCGCTAGATTGAATTTTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAATTCCTGTGATTTGCAAATTTTTAAGCTCAAAATCAGCCAAGTGACCGGAAAATTGGAATTTTTCGGAATTTTTTTTGTTGATTTTTGTGTAATTTTTGACCCCAAACTGATCAGTAGTATCCCCTCTTATCTCTTCTTCCTCTTATCATGCTTATCACTTTGAAAAAGTTTTCAAAGAGAAAAAGAGAAAACATTTTTCAAAAATCACTTTTCTCTCTCCTCTTCCACCCCATAAATCGATTCGAAATTGGCCGTTTCTTTGTCCTTTTTTTGACCGTGGTCGACCGGAATTCGGCCTATTTGTCCTCGACCTAAAAAATGGAAATTTGCAGAGCGTCTCGTTTCCAAGCACCCATCATCACCATGGCGTCGATTGCAATGGCAGCTGCTCAAGTTCAGGATATGGTGAGGAAACAT</canonical>
            <polymorphic>CAAAAATTAATTGGGATAATTATTGGTCTTGAAGAATCTTTATTCGAAAGCAAATCTGAAAATGCGCCAAATGCGCTCCAATGAGAATTTTCATTTTTCGCCGAAATTTTGCATTTTTTGTGAAAATTTCGAAAAAATTGCTCAAATCGCTGTATTAGAGAGTCGTAAAAGATTAAAAATTGGTACAAGTATTTTGCTGGAAATTTGAAAATTTTCGAAAAAAATTTTTACATTTTTGACAGAAATTTTTTTCTAAATACAAAAAATCGGAAATTTCGAAAAATTCGAGAATTTTGCATCTTTAAGTTGTCTGGAATTTTCAATTTTAGATCGATTTTTTTGTAAAAATTCACAAAATCGGAAATTTTGAGAAATTGAAAAAAAATATTTTGTAAAAATTCAATTTTTTTGGAATTTACCAAATTTTCTCAAATCGCCTGAAACGGTTAATTTCAGATCGATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGATYTTTTTTCCCAAAATATCTCAAAATCGCTAGATTGAATTTTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAATTCCTGTGATTTGCAAATTTTTAAGCTCAAAATCAGCCAAGTGACCGGAAAATTGGAATTTTTCGGAATTTTTTTTGTTGATTTTTGTGTAATTTTTGACCCCAAACTGATCAGTAGTATCCCCTCTTATCTCTTCTTCCTCTTATCATGCTTATCACTTTGAAAAAGTTTTCAAAGAGAAAAAGAGAAAACATTTTTCAAAAATCACTTTTCTCTCTCCTCTTCCACCCCATAAATCGATTCGAAATTGGCCGTTTCTTTGTCCTTTTTTTGACCGTGGTCGACCGGAATTCGGCCTATTTGTCCTCGACCTAAAAAATGGAAATTTGCAGAGCGTCTCGTTTCCAAGCACCCATCATCACCATGGCGTCGATTGCAATGGCAGCTGCTCAAGTTCAGGATATGGTGAGGAAACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTCACAAAATCGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTCTTATCAGTGATTTTTGGAGA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AAAATTCACAAAATCGGAAATTTTGAGAAATTGAAAAAAAATATTTTGTAAAAATTCAATTTTTTTGGAATTTACCAAATTTTCTCAAATCGCCTGAAACGGTTAATTTCAGATCGATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGATTTTTTTTCCCAAAATATCTCAAAATCGCTAGATTGAATTTTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAA</canonical_amplicon>
		<polymorphic_amplicon>AAAATTCACAAAATCGGAAATTTTGAGAAATTGAAAAAAAATATTTTGTAAAAATTCAATTTTTTTGGAATTTACCAAATTTTCTCAAATCGCCTGAAACGGTTAATTTCAGATCGATTTTTCGAAAATTTGAAAAAAAAAAGAATTTTTCGGATYTTTTTTCCCAAAATATCTCAAAATCGCTAGATTGAATTTTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24474</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>85763</contig_pos>
        <strand>+</strand>
        <context>ATTTGAATTT[A/T]TCCCTCTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAAGTTCAGGATATGGTGAGGAAACATATCGAGCGAGAAATTTGAATTT</left_flank>
        <right_flank>TCCCTCTTTTTTAGCGAAAAATTACGAAAAATCGGCGAAAAAAAAATCGA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGCTAGATTGAATTTTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAATTCCTGTGATTTGCAAATTTTTAAGCTCAAAATCAGCCAAGTGACCGGAAAATTGGAATTTTTCGGAATTTTTTTTGTTGATTTTTGTGTAATTTTTGACCCCAAACTGATCAGTAGTATCCCCTCTTATCTCTTCTTCCTCTTATCATGCTTATCACTTTGAAAAAGTTTTCAAAGAGAAAAAGAGAAAACATTTTTCAAAAATCACTTTTCTCTCTCCTCTTCCACCCCATAAATCGATTCGAAATTGGCCGTTTCTTTGTCCTTTTTTTGACCGTGGTCGACCGGAATTCGGCCTATTTGTCCTCGACCTAAAAAATGGAAATTTGCAGAGCGTCTCGTTTCCAAGCACCCATCATCACCATGGCGTCGATTGCAATGGCAGCTGCTCAAGTTCAGGATATGGTGAGGAAACATATCGAGCGAGAAATTTGAATTTTTCCCTCTTTTTTAGCGAAAAATTACGAAAAATCGGCGAAAAAAAAATCGAGTTTTAGGCATAAAACTGCTGAAATTGACTGGAAAAATTGGCATTTTTTCGCAATTTTTAGGCTAAAATTGACTGAAATTTCTAGAATTTTCTCGGCATTTTTTCTGTGTAATTCGAGGACCTCTGTGTCAACGAAAACCGACCGAGATGACCTCGTCAGTTGTCTTTTTAGAAGATGATATCGCCCCGTTTTAACAATTTTGGGGAAATAGTATGGTGAGAGACGAGACGCAGAGAGAGAGAGAGAGAGAGTTCAATGGCGTTCGGCCGCCGACTTTTGACGACGAGAGAGTGTGCGCAACGGAGAGAGTCGGCTAGAGAAGATGAGCGAGAAGTGGAAGTCAATATTGACGGTATGTACTCTCTTACTGAAGTAGGGACAGGGACGGTTTTCGGGACAGAATGGAAAGGGGACTACAAACTACAAAAAGTGACAAAAACAATGATGCA</canonical>
            <polymorphic>TCGCTAGATTGAATTTTCGAAAATTTCAAAAAAATTTCTCCAAAAATCACTGATAAGAAATTCCTGTGATTTGCAAATTTTTAAGCTCAAAATCAGCCAAGTGACCGGAAAATTGGAATTTTTCGGAATTTTTTTTGTTGATTTTTGTGTAATTTTTGACCCCAAACTGATCAGTAGTATCCCCTCTTATCTCTTCTTCCTCTTATCATGCTTATCACTTTGAAAAAGTTTTCAAAGAGAAAAAGAGAAAACATTTTTCAAAAATCACTTTTCTCTCTCCTCTTCCACCCCATAAATCGATTCGAAATTGGCCGTTTCTTTGTCCTTTTTTTGACCGTGGTCGACCGGAATTCGGCCTATTTGTCCTCGACCTAAAAAATGGAAATTTGCAGAGCGTCTCGTTTCCAAGCACCCATCATCACCATGGCGTCGATTGCAATGGCAGCTGCTCAAGTTCAGGATATGGTGAGGAAACATATCGAGCGAGAAATTTGAATTTWTCCCTCTTTTTTAGCGAAAAATTACGAAAAATCGGCGAAAAAAAAATCGAGTTTTAGGCATAAAACTGCTGAAATTGACTGGAAAAATTGGCATTTTTTCGCAATTTTTAGGCTAAAATTGACTGAAATTTCTAGAATTTTCTCGGCATTTTTTCTGTGTAATTCGAGGACCTCTGTGTCAACGAAAACCGACCGAGATGACCTCGTCAGTTGTCTTTTTAGAAGATGATATCGCCCCGTTTTAACAATTTTGGGGAAATAGTATGGTGAGAGACGAGACGCAGAGAGAGAGAGAGAGAGAGTTCAATGGCGTTCGGCCGCCGACTTTTGACGACGAGAGAGTGTGCGCAACGGAGAGAGTCGGCTAGAGAAGATGAGCGAGAAGTGGAAGTCAATATTGACGGTATGTACTCTCTTACTGAAGTAGGGACAGGGACGGTTTTCGGGACAGAATGGAAAGGGGACTACAAACTACAAAAAGTGACAAAAACAATGATGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTTGTCCTCGACCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAATTTTTCCAGTCAATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>CTATTTGTCCTCGACCTAAAAAATGGAAATTTGCAGAGCGTCTCGTTTCCAAGCACCCATCATCACCATGGCGTCGATTGCAATGGCAGCTGCTCAAGTTCAGGATATGGTGAGGAAACATATCGAGCGAGAAATTTGAATTTTTCCCTCTTTTTTAGCGAAAAATTACGAAAAATCGGCGAAAAAAAAATCGAGTTTTAGGCATAAAACTGCTGAAATTGACTGGAAAAATTG</canonical_amplicon>
		<polymorphic_amplicon>CTATTTGTCCTCGACCTAAAAAATGGAAATTTGCAGAGCGTCTCGTTTCCAAGCACCCATCATCACCATGGCGTCGATTGCAATGGCAGCTGCTCAAGTTCAGGATATGGTGAGGAAACATATCGAGCGAGAAATTTGAATTTWTCCCTCTTTTTTAGCGAAAAATTACGAAAAATCGGCGAAAAAAAAATCGAGTTTTAGGCATAAAACTGCTGAAATTGACTGGAAAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24475</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>140154</contig_pos>
        <strand>+</strand>
        <context>ttcttcagaa[A/C]cwggaaaaat</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCTGAATTTCCGAATATTCGAAAATTCAGAATTTCACATTCTTCAGAA</left_flank>
        <right_flank>CTGGAAAAATATTTTGGATGTATTTTTTTTCTCTACTTCCTGCTCAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATTCCATACTTGTAAAATTCCGGGCAGGCCATATTTTTCAAAATTTCAAGAATATTTTTTCAGAATATTTTTCAAAATTCCCAAAATTTCAAAGATTTTGAATTTCTGAATTTCTGAATTTCTGGATTTCTGAATTTCTAATTTTCTGAATTTCTGAATTTCTGAATTTCTGAGTTTCTGAATCCCTGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGACTTCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATCCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCGAATATTCGAAAATTCAGAATTTCACATTCTTCAGAATCTGGAAAAATATTTTGGATGTATTTTTTTTCTCTACTTCCTGCTCAAAAATGAATATTTCTGAAAAATGTGTGATCACTGAAAACTGTCAATTGCATTCATTCCCAGTCTGAAAATCCTTTTTTAAAGTTCAAAAATGTTTCGGAAGTTTTTTTAAAATAAAATTTTCTAAAACTTCCAAAACTCCAAAATCCCCAAATTTCAATTTCTTAGGTTCGGATTTTTTTCGGAGACCAGGAAATTTGAAAATCTGGAATTCCGTAAATTTAGAAATCTAGGAATCTAGGAATCTGCAAAACCAGGATTTTCTTTCTAGATTCATTACATTTTTCAAAATTTCAAAAAACATTTTTTTTCTAATTTTTGGTCCATTTTCAGATGCCAATCGGCGGTGGCAGCGGCTCATCATCGGGATCGATTTCTCGTGAAATTCGCATCGAATCAATGAATTTGAACGACGTCGAAGATGGCGCCAGATGTCGTGATAAGGAGTGCCGTTTG</canonical>
            <polymorphic>AAAATTCCATACTTGTAAAATTCCGGGCAGGCCATATTTTTCAAAATTTCAAGAATATTTTTTCAGAATATTTTTCAAAATTCCCAAAATTTCAAAGATTTTGAATTTCTGAATTTCTGAATTTCTGGATTTCTGAATTTCTAATTTTCTGAATTTCTGAATTTCTGAATTTCTGAGTTTCTGAATCCCTGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGACTTCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATCCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCGAATATTCGAAAATTCAGAATTTCACATTCTTCAGAAMCTGGAAAAATATTTTGGATGTATTTTTTTTCTCTACTTCCTGCTCAAAAATGAATATTTCTGAAAAATGTGTGATCACTGAAAACTGTCAATTGCATTCATTCCCAGTCTGAAAATCCTTTTTTAAAGTTCAAAAATGTTTCGGAAGTTTTTTTAAAATAAAATTTTCTAAAACTTCCAAAACTCCAAAATCCCCAAATTTCAATTTCTTAGGTTCGGATTTTTTTCGGAGACCAGGAAATTTGAAAATCTGGAATTCCGTAAATTTAGAAATCTAGGAATCTAGGAATCTGCAAAACCAGGATTTTCTTTCTAGATTCATTACATTTTTCAAAATTTCAAAAAACATTTTTTTTCTAATTTTTGGTCCATTTTCAGATGCCAATCGGCGGTGGCAGCGGCTCATCATCGGGATCGATTTCTCGTGAAATTCGCATCGAATCAATGAATTTGAACGACGTCGAAGATGGCGCCAGATGTCGTGATAAGGAGTGCCGTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>281 183 168 146 123 62 29 8</canonical_bands>
                <polymorphic_bands>427 183 168 123 62 29 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>249 185 97 87 75 62 57 50 40 32 32 20 14</canonical_bands>
                <polymorphic_bands>434 97 87 75 62 57 50 40 32 32 20 14</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>281 183 168 146 123 62 29 8</canonical_bands>
                <polymorphic_bands>427 183 168 123 62 29 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAAAATTCCATACTTGTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CATTTTTGAGCAGGAAGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>554</pcr_amplicon_size>
		<canonical_amplicon>ATCTGGAAAAATATTTTGGATGTATTTTTTTTCTCTACTTCCTGCTCAAAAATG</canonical_amplicon>
		<polymorphic_amplicon>AMCTGGAAAAATATTTTGGATGTATTTTTTTTCTCTACTTCCTGCTCAAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24476</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>140156</contig_pos>
        <strand>+</strand>
        <context>cttcagaamc[A/T]ggaaaaataT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTGAATTTCCGAATATTCGAAAATTCAGAATTTCACATTCTTCAGAATC</left_flank>
        <right_flank>GGAAAAATATTTTGGATGTATTTTTTTTCTCTACTTCCTGCTCAAAAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTCCATACTTGTAAAATTCCGGGCAGGCCATATTTTTCAAAATTTCAAGAATATTTTTTCAGAATATTTTTCAAAATTCCCAAAATTTCAAAGATTTTGAATTTCTGAATTTCTGAATTTCTGGATTTCTGAATTTCTAATTTTCTGAATTTCTGAATTTCTGAATTTCTGAGTTTCTGAATCCCTGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGACTTCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATCCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCGAATATTCGAAAATTCAGAATTTCACATTCTTCAGAATCTGGAAAAATATTTTGGATGTATTTTTTTTCTCTACTTCCTGCTCAAAAATGAATATTTCTGAAAAATGTGTGATCACTGAAAACTGTCAATTGCATTCATTCCCAGTCTGAAAATCCTTTTTTAAAGTTCAAAAATGTTTCGGAAGTTTTTTTAAAATAAAATTTTCTAAAACTTCCAAAACTCCAAAATCCCCAAATTTCAATTTCTTAGGTTCGGATTTTTTTCGGAGACCAGGAAATTTGAAAATCTGGAATTCCGTAAATTTAGAAATCTAGGAATCTAGGAATCTGCAAAACCAGGATTTTCTTTCTAGATTCATTACATTTTTCAAAATTTCAAAAAACATTTTTTTTCTAATTTTTGGTCCATTTTCAGATGCCAATCGGCGGTGGCAGCGGCTCATCATCGGGATCGATTTCTCGTGAAATTCGCATCGAATCAATGAATTTGAACGACGTCGAAGATGGCGCCAGATGTCGTGATAAGGAGTGCCGTTTGGG</canonical>
            <polymorphic>AATTCCATACTTGTAAAATTCCGGGCAGGCCATATTTTTCAAAATTTCAAGAATATTTTTTCAGAATATTTTTCAAAATTCCCAAAATTTCAAAGATTTTGAATTTCTGAATTTCTGAATTTCTGGATTTCTGAATTTCTAATTTTCTGAATTTCTGAATTTCTGAATTTCTGAGTTTCTGAATCCCTGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGACTTCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATCCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCGAATATTCGAAAATTCAGAATTTCACATTCTTCAGAATCWGGAAAAATATTTTGGATGTATTTTTTTTCTCTACTTCCTGCTCAAAAATGAATATTTCTGAAAAATGTGTGATCACTGAAAACTGTCAATTGCATTCATTCCCAGTCTGAAAATCCTTTTTTAAAGTTCAAAAATGTTTCGGAAGTTTTTTTAAAATAAAATTTTCTAAAACTTCCAAAACTCCAAAATCCCCAAATTTCAATTTCTTAGGTTCGGATTTTTTTCGGAGACCAGGAAATTTGAAAATCTGGAATTCCGTAAATTTAGAAATCTAGGAATCTAGGAATCTGCAAAACCAGGATTTTCTTTCTAGATTCATTACATTTTTCAAAATTTCAAAAAACATTTTTTTTCTAATTTTTGGTCCATTTTCAGATGCCAATCGGCGGTGGCAGCGGCTCATCATCGGGATCGATTTCTCGTGAAATTCGCATCGAATCAATGAATTTGAACGACGTCGAAGATGGCGCCAGATGTCGTGATAAGGAGTGCCGTTTGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAGNNNCTG</site>
                <isoschizomers>
                    <enzyme>AlwNI</enzyme>
                    <enzyme>CaiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCGAAAATTCCATACTTGTAAA</pcr_primer_p1>
		<pcr_primer_p2>TATTCATTTTTGAGCAGGAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>560</pcr_amplicon_size>
		<canonical_amplicon>CTGGAAAAATATTTTGGATGTATTTTTTTTCTCTACTTCCTGCTCAAAAATGAATA</canonical_amplicon>
		<polymorphic_amplicon>CWGGAAAAATATTTTGGATGTATTTTTTTTCTCTACTTCCTGCTCAAAAATGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24477</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>140302</contig_pos>
        <strand>+</strand>
        <context>GTTTCGGAAG[A/G]TTTTTTWAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATTCCCAGTCTGAAAATCCTTTTTTAAAGTTCAAAAATGTTTCGGAAG</left_flank>
        <right_flank>TTTTTTAAAATAAAATTTTCTAAAACTTCCAAAACTCCAAAATCCCCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAATTTCTGAATTTCTGAATTTCTGAGTTTCTGAATCCCTGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGACTTCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATCCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCGAATATTCGAAAATTCAGAATTTCACATTCTTCAGAATCTGGAAAAATATTTTGGATGTATTTTTTTTCTCTACTTCCTGCTCAAAAATGAATATTTCTGAAAAATGTGTGATCACTGAAAACTGTCAATTGCATTCATTCCCAGTCTGAAAATCCTTTTTTAAAGTTCAAAAATGTTTCGGAAGTTTTTTTAAAATAAAATTTTCTAAAACTTCCAAAACTCCAAAATCCCCAAATTTCAATTTCTTAGGTTCGGATTTTTTTCGGAGACCAGGAAATTTGAAAATCTGGAATTCCGTAAATTTAGAAATCTAGGAATCTAGGAATCTGCAAAACCAGGATTTTCTTTCTAGATTCATTACATTTTTCAAAATTTCAAAAAACATTTTTTTTCTAATTTTTGGTCCATTTTCAGATGCCAATCGGCGGTGGCAGCGGCTCATCATCGGGATCGATTTCTCGTGAAATTCGCATCGAATCAATGAATTTGAACGACGTCGAAGATGGCGCCAGATGTCGTGATAAGGAGTGCCGTTTGGGATGGAAACAGCATCCCTGGAGGTCAGTTTGGCGGGAATTCGAAATTTTGAATTTTAAAAATACCCTCTCTAAACTTAACCTCAATTATCTTGGTTCCTGTGAAAGATATCAGAAAGTAGTCAACTGATAAAATGTTGGTGATATTA</canonical>
            <polymorphic>CTGAATTTCTGAATTTCTGAATTTCTGAGTTTCTGAATCCCTGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGACTTCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATCCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCGAATATTCGAAAATTCAGAATTTCACATTCTTCAGAATCTGGAAAAATATTTTGGATGTATTTTTTTTCTCTACTTCCTGCTCAAAAATGAATATTTCTGAAAAATGTGTGATCACTGAAAACTGTCAATTGCATTCATTCCCAGTCTGAAAATCCTTTTTTAAAGTTCAAAAATGTTTCGGAAGRTTTTTTAAAATAAAATTTTCTAAAACTTCCAAAACTCCAAAATCCCCAAATTTCAATTTCTTAGGTTCGGATTTTTTTCGGAGACCAGGAAATTTGAAAATCTGGAATTCCGTAAATTTAGAAATCTAGGAATCTAGGAATCTGCAAAACCAGGATTTTCTTTCTAGATTCATTACATTTTTCAAAATTTCAAAAAACATTTTTTTTCTAATTTTTGGTCCATTTTCAGATGCCAATCGGCGGTGGCAGCGGCTCATCATCGGGATCGATTTCTCGTGAAATTCGCATCGAATCAATGAATTTGAACGACGTCGAAGATGGCGCCAGATGTCGTGATAAGGAGTGCCGTTTGGGATGGAAACAGCATCCCTGGAGGTCAGTTTGGCGGGAATTCGAAATTTTGAATTTTAAAAATACCCTCTCTAAACTTAACCTCAATTATCTTGGTTCCTGTGAAAGATATCAGAAAGTAGTCAACTGATAAAATGTTGGTGATATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGTGATCACTGAAAACTGTC</pcr_primer_p1>
		<pcr_primer_p2>GAATCTAGAAAGAAAATCCTGGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TGTGTGATCACTGAAAACTGTCAATTGCATTCATTCCCAGTCTGAAAATCCTTTTTTAAAGTTCAAAAATGTTTCGGAAGTTTTTTTAAAATAAAATTTTCTAAAACTTCCAAAACTCCAAAATCCCCAAATTTCAATTTCTTAGGTTCGGATTTTTTTCGGAGACCAGGAAATTTGAAAATCTGGAATTCCGTAAATTTAGAAATCTAGGAATCTAGGAATCTGCAAAACCAGGATTTTCTTTCTAGATTC</canonical_amplicon>
		<polymorphic_amplicon>TGTGTGATCACTGAAAACTGTCAATTGCATTCATTCCCAGTCTGAAAATCCTTTTTTAAAGTTCAAAAATGTTTCGGAAGRTTTTTTAAAATAAAATTTTCTAAAACTTCCAAAACTCCAAAATCCCCAAATTTCAATTTCTTAGGTTCGGATTTTTTTCGGAGACCAGGAAATTTGAAAATCTGGAATTCCGTAAATTTAGAAATCTAGGAATCTAGGAATCTGCAAAACCAGGATTTTCTTTCTAGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24478</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>140309</contig_pos>
        <strand>+</strand>
        <context>AAGRTTTTTT[A/T]AAATAAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGTCTGAAAATCCTTTTTTAAAGTTCAAAAATGTTTCGGAAGTTTTTTT</left_flank>
        <right_flank>AAATAAAATTTTCTAAAACTTCCAAAACTCCAAAATCCCCAAATTTCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGAATTTCTGAATTTCTGAGTTTCTGAATCCCTGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGACTTCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATCCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCGAATATTCGAAAATTCAGAATTTCACATTCTTCAGAATCTGGAAAAATATTTTGGATGTATTTTTTTTCTCTACTTCCTGCTCAAAAATGAATATTTCTGAAAAATGTGTGATCACTGAAAACTGTCAATTGCATTCATTCCCAGTCTGAAAATCCTTTTTTAAAGTTCAAAAATGTTTCGGAAGTTTTTTTAAAATAAAATTTTCTAAAACTTCCAAAACTCCAAAATCCCCAAATTTCAATTTCTTAGGTTCGGATTTTTTTCGGAGACCAGGAAATTTGAAAATCTGGAATTCCGTAAATTTAGAAATCTAGGAATCTAGGAATCTGCAAAACCAGGATTTTCTTTCTAGATTCATTACATTTTTCAAAATTTCAAAAAACATTTTTTTTCTAATTTTTGGTCCATTTTCAGATGCCAATCGGCGGTGGCAGCGGCTCATCATCGGGATCGATTTCTCGTGAAATTCGCATCGAATCAATGAATTTGAACGACGTCGAAGATGGCGCCAGATGTCGTGATAAGGAGTGCCGTTTGGGATGGAAACAGCATCCCTGGAGGTCAGTTTGGCGGGAATTCGAAATTTTGAATTTTAAAAATACCCTCTCTAAACTTAACCTCAATTATCTTGGTTCCTGTGAAAGATATCAGAAAGTAGTCAACTGATAAAATGTTGGTGATATTATTAATAA</canonical>
            <polymorphic>TCTGAATTTCTGAATTTCTGAGTTTCTGAATCCCTGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGACTTCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATCCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCGAATATTCGAAAATTCAGAATTTCACATTCTTCAGAATCTGGAAAAATATTTTGGATGTATTTTTTTTCTCTACTTCCTGCTCAAAAATGAATATTTCTGAAAAATGTGTGATCACTGAAAACTGTCAATTGCATTCATTCCCAGTCTGAAAATCCTTTTTTAAAGTTCAAAAATGTTTCGGAAGTTTTTTTWAAATAAAATTTTCTAAAACTTCCAAAACTCCAAAATCCCCAAATTTCAATTTCTTAGGTTCGGATTTTTTTCGGAGACCAGGAAATTTGAAAATCTGGAATTCCGTAAATTTAGAAATCTAGGAATCTAGGAATCTGCAAAACCAGGATTTTCTTTCTAGATTCATTACATTTTTCAAAATTTCAAAAAACATTTTTTTTCTAATTTTTGGTCCATTTTCAGATGCCAATCGGCGGTGGCAGCGGCTCATCATCGGGATCGATTTCTCGTGAAATTCGCATCGAATCAATGAATTTGAACGACGTCGAAGATGGCGCCAGATGTCGTGATAAGGAGTGCCGTTTGGGATGGAAACAGCATCCCTGGAGGTCAGTTTGGCGGGAATTCGAAATTTTGAATTTTAAAAATACCCTCTCTAAACTTAACCTCAATTATCTTGGTTCCTGTGAAAGATATCAGAAAGTAGTCAACTGATAAAATGTTGGTGATATTATTAATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>469 403 98 30</canonical_bands>
                <polymorphic_bands>469 433 98</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>468 403 72 30 21 6</canonical_bands>
                <polymorphic_bands>468 433 72 21 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGTGATCACTGAAAACTGTC</pcr_primer_p1>
		<pcr_primer_p2>GAATCTAGAAAGAAAATCCTGGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TGTGTGATCACTGAAAACTGTCAATTGCATTCATTCCCAGTCTGAAAATCCTTTTTTAAAGTTCAAAAATGTTTCGGAAGTTTTTTTAAAATAAAATTTTCTAAAACTTCCAAAACTCCAAAATCCCCAAATTTCAATTTCTTAGGTTCGGATTTTTTTCGGAGACCAGGAAATTTGAAAATCTGGAATTCCGTAAATTTAGAAATCTAGGAATCTAGGAATCTGCAAAACCAGGATTTTCTTTCTAGATTC</canonical_amplicon>
		<polymorphic_amplicon>TGTGTGATCACTGAAAACTGTCAATTGCATTCATTCCCAGTCTGAAAATCCTTTTTTAAAGTTCAAAAATGTTTCGGAAGTTTTTTTWAAATAAAATTTTCTAAAACTTCCAAAACTCCAAAATCCCCAAATTTCAATTTCTTAGGTTCGGATTTTTTTCGGAGACCAGGAAATTTGAAAATCTGGAATTCCGTAAATTTAGAAATCTAGGAATCTAGGAATCTGCAAAACCAGGATTTTCTTTCTAGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24479</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>140350</contig_pos>
        <strand>+</strand>
        <context>CAAAATCCCC[A/G]AATTTCAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTTTTTTAAAATAAAATTTTCTAAAACTTCCAAAACTCCAAAATCCCC</left_flank>
        <right_flank>AATTTCAATTTCTTAGGTTCGGATTTTTTTCGGAGACCAGGAAATTTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGACTTCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATCCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCGAATATTCGAAAATTCAGAATTTCACATTCTTCAGAATCTGGAAAAATATTTTGGATGTATTTTTTTTCTCTACTTCCTGCTCAAAAATGAATATTTCTGAAAAATGTGTGATCACTGAAAACTGTCAATTGCATTCATTCCCAGTCTGAAAATCCTTTTTTAAAGTTCAAAAATGTTTCGGAAGTTTTTTTAAAATAAAATTTTCTAAAACTTCCAAAACTCCAAAATCCCCAAATTTCAATTTCTTAGGTTCGGATTTTTTTCGGAGACCAGGAAATTTGAAAATCTGGAATTCCGTAAATTTAGAAATCTAGGAATCTAGGAATCTGCAAAACCAGGATTTTCTTTCTAGATTCATTACATTTTTCAAAATTTCAAAAAACATTTTTTTTCTAATTTTTGGTCCATTTTCAGATGCCAATCGGCGGTGGCAGCGGCTCATCATCGGGATCGATTTCTCGTGAAATTCGCATCGAATCAATGAATTTGAACGACGTCGAAGATGGCGCCAGATGTCGTGATAAGGAGTGCCGTTTGGGATGGAAACAGCATCCCTGGAGGTCAGTTTGGCGGGAATTCGAAATTTTGAATTTTAAAAATACCCTCTCTAAACTTAACCTCAATTATCTTGGTTCCTGTGAAAGATATCAGAAAGTAGTCAACTGATAAAATGTTGGTGATATTATTAATAACATTTTATCAGTTGACAACTGTTTGATATCTCTTACAGGAA</canonical>
            <polymorphic>CTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGACTTCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATCCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCGAATATTCGAAAATTCAGAATTTCACATTCTTCAGAATCTGGAAAAATATTTTGGATGTATTTTTTTTCTCTACTTCCTGCTCAAAAATGAATATTTCTGAAAAATGTGTGATCACTGAAAACTGTCAATTGCATTCATTCCCAGTCTGAAAATCCTTTTTTAAAGTTCAAAAATGTTTCGGAAGTTTTTTTAAAATAAAATTTTCTAAAACTTCCAAAACTCCAAAATCCCCRAATTTCAATTTCTTAGGTTCGGATTTTTTTCGGAGACCAGGAAATTTGAAAATCTGGAATTCCGTAAATTTAGAAATCTAGGAATCTAGGAATCTGCAAAACCAGGATTTTCTTTCTAGATTCATTACATTTTTCAAAATTTCAAAAAACATTTTTTTTCTAATTTTTGGTCCATTTTCAGATGCCAATCGGCGGTGGCAGCGGCTCATCATCGGGATCGATTTCTCGTGAAATTCGCATCGAATCAATGAATTTGAACGACGTCGAAGATGGCGCCAGATGTCGTGATAAGGAGTGCCGTTTGGGATGGAAACAGCATCCCTGGAGGTCAGTTTGGCGGGAATTCGAAATTTTGAATTTTAAAAATACCCTCTCTAAACTTAACCTCAATTATCTTGGTTCCTGTGAAAGATATCAGAAAGTAGTCAACTGATAAAATGTTGGTGATATTATTAATAACATTTTATCAGTTGACAACTGTTTGATATCTCTTACAGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>181 145 94 91 71 42 35 19 18 16 16 15 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7 3</canonical_bands>
                <polymorphic_bands>181 145 94 91 77 71 19 18 16 16 15 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGTGATCACTGAAAACTGTC</pcr_primer_p1>
		<pcr_primer_p2>GAATCTAGAAAGAAAATCCTGGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TGTGTGATCACTGAAAACTGTCAATTGCATTCATTCCCAGTCTGAAAATCCTTTTTTAAAGTTCAAAAATGTTTCGGAAGTTTTTTTAAAATAAAATTTTCTAAAACTTCCAAAACTCCAAAATCCCCAAATTTCAATTTCTTAGGTTCGGATTTTTTTCGGAGACCAGGAAATTTGAAAATCTGGAATTCCGTAAATTTAGAAATCTAGGAATCTAGGAATCTGCAAAACCAGGATTTTCTTTCTAGATTC</canonical_amplicon>
		<polymorphic_amplicon>TGTGTGATCACTGAAAACTGTCAATTGCATTCATTCCCAGTCTGAAAATCCTTTTTTAAAGTTCAAAAATGTTTCGGAAGTTTTTTTAAAATAAAATTTTCTAAAACTTCCAAAACTCCAAAATCCCCRAATTTCAATTTCTTAGGTTCGGATTTTTTTCGGAGACCAGGAAATTTGAAAATCTGGAATTCCGTAAATTTAGAAATCTAGGAATCTAGGAATCTGCAAAACCAGGATTTTCTTTCTAGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24480</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>142020</contig_pos>
        <strand>+</strand>
        <context>GTAAGAGCAT[G/T]CCCCCCCACC</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTCTTCATTTATTGCTAGGATTATATAAAACCCGAAAAGTAAGAGCAT</left_flank>
        <right_flank>CCCCCCCACCACTGGTTTATGTCCAAGACTTCCCGGAAGTCATTGGTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTTAAATTTCCGAAATTCGATTTTTTTCCTATAAAATTTCTCAACCCGTACCTTTGAACAAATTTATCTTAGTTCCAGTGAGAGATACCAAAAAGTTATCAATTAATAAAATGTTGATGATATTATCAGAAACATTTTATCAGTTGACTACTTTTTGATATCTCTCACAGTAATCGAGATAACTAAGCTCAAAATTGAAGTGCAAGTCTAAATGTACCGAGCCATCTCAAACTTTGAACTAATTTATCTCAGTTCCTAAAAAAGATATCAAAAAGTAATCAATTGATAAAATGATTATCATATTATGAGTAACATTCTATCAGTTGACAACTTATTGATATCTATGACAGGAACCGAGATAAATTGGCTCAAAGGCAGAGCTCATGTTTGAAAGTCTGTTTTATCTCATGTTTATGACCTAAAATTAACCATTAAAATATTCTCAATTTCTTCATTTATTGCTAGGATTATATAAAACCCGAAAAGTAAGAGCATCCCCCCCCACCACTGGTTTATGTCCAAGACTTCCCGGAAGTCATTGGTTTCCGTTTTCTGCGCTCTGCACAAAAATTTCCCTAAACTCTTCTCTTTTAGTTAGTGTCAGTGAGAAGAAGGGAAATTTTGGAAATCTCTGTTCTGTATTCGAAGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCCCTCTTTCTATCCATCCCTTTCCTAATTCGTCCCTTTTTCTTCCCATCTAACAATTCTAAATTTTGACGTCTTCTGCTTCTTGGTGGTCCATCCACATCTCCTAATTTATGAGCCTAGTAGATACAGAAGGATTGGCTTCTAAACAACACACGCAATGTTTTTGTTGGGGTCTTTTGTTTGATGATGGACCACAGAAAAGTCTCTTTTTTCGAAATGATGACATTTGTTTTTTTTTCTGGAGCTCTGAAATTTTAGAACGAATTCTAAGAATCTAAGAATCTAAGAATCTAAGAATCT</canonical>
            <polymorphic>AATTTTTAAATTTCCGAAATTCGATTTTTTTCCTATAAAATTTCTCAACCCGTACCTTTGAACAAATTTATCTTAGTTCCAGTGAGAGATACCAAAAAGTTATCAATTAATAAAATGTTGATGATATTATCAGAAACATTTTATCAGTTGACTACTTTTTGATATCTCTCACAGTAATCGAGATAACTAAGCTCAAAATTGAAGTGCAAGTCTAAATGTACCGAGCCATCTCAAACTTTGAACTAATTTATCTCAGTTCCTAAAAAAGATATCAAAAAGTAATCAATTGATAAAATGATTATCATATTATGAGTAACATTCTATCAGTTGACAACTTATTGATATCTATGACAGGAACCGAGATAAATTGGCTCAAAGGCAGAGCTCATGTTTGAAAGTCTGTTTTATCTCATGTTTATGACCTAAAATTAACCATTAAAATATTCTCAATTTCTTCATTTATTGCTAGGATTATATAAAACCCGAAAAGTAAGAGCATKCCCCCCCACCACTGGTTTATGTCCAAGACTTCCCGGAAGTCATTGGTTTCCGTTTTCTGCGCTCTGCACAAAAATTTCCCTAAACTCTTCTCTTTTAGTTAGTGTCAGTGAGAAGAAGGGAAATTTTGGAAATCTCTGTTCTGTATTCGAAGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCCCTCTTTCTATCCATCCCTTTCCTAATTCGTCCCTTTTTCTTCCCATCTAACAATTCTAAATTTTGACGTCTTCTGCTTCTTGGTGGTCCATCCACATCTCCTAATTTATGAGCCTAGTAGATACAGAAGGATTGGCTTCTAAACAACACACGCAATGTTTTTGTTGGGGTCTTTTGTTTGATGATGGACCACAGAAAAGTCTCTTTTTTCGAAATGATGACATTTGTTTTTTTTTCTGGAGCTCTGAAATTTTAGAACGAATTCTAAGAATCTAAGAATCTAAGAATCTAAGAATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTTTTATCTCATGTTTATGACC</pcr_primer_p1>
		<pcr_primer_p2>ATACAGAACAGAGATTTCCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTGTTTTATCTCATGTTTATGACCTAAAATTAACCATTAAAATATTCTCAATTTCTTCATTTATTGCTAGGATTATATAAAACCCGAAAAGTAAGAGCATCCCCCCCCACCACTGGTTTATGTCCAAGACTTCCCGGAAGTCATTGGTTTCCGTTTTCTGCGCTCTGCACAAAAATTTCCCTAAACTCTTCTCTTTTAGTTAGTGTCAGTGAGAAGAAGGGAAATTTTGGAAATCTCTGTTCTGTAT</canonical_amplicon>
		<polymorphic_amplicon>CTGTTTTATCTCATGTTTATGACCTAAAATTAACCATTAAAATATTCTCAATTTCTTCATTTATTGCTAGGATTATATAAAACCCGAAAAGTAAGAGCATKCCCCCCCACCACTGGTTTATGTCCAAGACTTCCCGGAAGTCATTGGTTTCCGTTTTCTGCGCTCTGCACAAAAATTTCCCTAAACTCTTCTCTTTTAGTTAGTGTCAGTGAGAAGAAGGGAAATTTTGGAAATCTCTGTTCTGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24481</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>155785</contig_pos>
        <strand>+</strand>
        <context>GTCGTGAAAG[C/T]CCCCCCCCCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGTATGTACAAAATGCCCGGGGCCGGGTTTTTCGATGGGTCGTGAAAG</left_flank>
        <right_flank>CCCCCCCCCCCTTCGTTTTGGTTTTGTATGGGGGCTTCTCTTTTTTCCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTTTTCTGAAAGTCGAAAAAACCCTCTGTAACATCTACAGTAACCTCAAAATACCCTCAGAAAATGCAATCGCGCTCTAATGCCAACTTTTTCATGTTCTGCTATTTTCTTCAAAAAGCTATTTTTGCAAATGCGCTCTAATGCAAATCCCTTCAAACTAGACTTTGACCCCATAACATTCATAACAGCCTGTTTTCCTCCATTTTCCTGCTTTTCCAACTACTCAAAAATTTAAAATTCAAATGTTTAGTTGGAGCGGGAAGAAGCAAGGGATGGGTGGCTCTGAGTTGTTGTATGTATTTGTATGTACAAAATGCCCGGGGCCGGGTTTTTCGATGGGTCGTGAAAGCCCCCCCCCCCCTTCGTTTTGGTTTTGTATGGGGGCTTCTCTTTTTTCCCGCGGGACCCCCTCCCGAATTTTGAGAAGAAGGAGAGCACATATACATAGATACATGCACCCGGACCACCACCAGCCATCCAGTTACATTCCTTCCGGTTTTTAGACGAGATTCTGAAAAAATAAAATCCGAAGTTCTGAAATTCTGAATATCTAAAACTATGAAATTCTGAAATTTCGATATTCTGATATTCAGAAAATTCGAGTTTTTGAAAGTCTGAAATGCTGAAATTCTGAAATTCTGAAAATCTGAAATACTGAAATTCTAGAATTCTTAGTTTCTGAAATTTTAAAAATCTGAATGGATCCCTGAAACCCAAAATTCCAAACTCTTGCCTATTCGAAAATTGGATTTTTCTAGATTCTAAAAGTTCTGAAATTCAGAAATTTCATAATTTTTTTTTCTGAAAATTTTTTTTTTATTTTTCAAAATTTTAAAGATTATTAGATTCT</canonical>
            <polymorphic>CTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTTTTCTGAAAGTCGAAAAAACCCTCTGTAACATCTACAGTAACCTCAAAATACCCTCAGAAAATGCAATCGCGCTCTAATGCCAACTTTTTCATGTTCTGCTATTTTCTTCAAAAAGCTATTTTTGCAAATGCGCTCTAATGCAAATCCCTTCAAACTAGACTTTGACCCCATAACATTCATAACAGCCTGTTTTCCTCCATTTTCCTGCTTTTCCAACTACTCAAAAATTTAAAATTCAAATGTTTAGTTGGAGCGGGAAGAAGCAAGGGATGGGTGGCTCTGAGTTGTTGTATGTATTTGTATGTACAAAATGCCCGGGGCCGGGTTTTTCGATGGGTCGTGAAAGYCCCCCCCCCCCTTCGTTTTGGTTTTGTATGGGGGCTTCTCTTTTTTCCCGCGGGACCCCCTCCCGAATTTTGAGAAGAAGGAGAGCACATATACATAGATACATGCACCCGGACCACCACCAGCCATCCAGTTACATTCCTTCCGGTTTTTAGACGAGATTCTGAAAAAATAAAATCCGAAGTTCTGAAATTCTGAATATCTAAAACTATGAAATTCTGAAATTTCGATATTCTGATATTCAGAAAATTCGAGTTTTTGAAAGTCTGAAATGCTGAAATTCTGAAATTCTGAAAATCTGAAATACTGAAATTCTAGAATTCTTAGTTTCTGAAATTTTAAAAATCTGAATGGATCCCTGAAACCCAAAATTCCAAACTCTTGCCTATTCGAAAATTGGATTTTTCTAGATTCTAAAAGTTCTGAAATTCAGAAATTTCATAATTTTTTTTTCTGAAAATTTTTTTTTTATTTTTCAAAATTTTAAAGATTATTAGATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>377 268 92 89 70 43 35 26</canonical_bands>
                <polymorphic_bands>377 268 92 89 70 61 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCTCTGAGTTGTTGTATGTATT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAGAATCTCGTCTAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GGCTCTGAGTTGTTGTATGTATTTGTATGTACAAAATGCCCGGGGCCGGGTTTTTCGATGGGTCGTGAAAGCCCCCCCCCCCCTTCGTTTTGGTTTTGTATGGGGGCTTCTCTTTTTTCCCGCGGGACCCCCTCCCGAATTTTGAGAAGAAGGAGAGCACATATACATAGATACATGCACCCGGACCACCACCAGCCATCCAGTTACATTCCTTCCGGTTTTTAGACGAGATTCTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGCTCTGAGTTGTTGTATGTATTTGTATGTACAAAATGCCCGGGGCCGGGTTTTTCGATGGGTCGTGAAAGYCCCCCCCCCCCTTCGTTTTGGTTTTGTATGGGGGCTTCTCTTTTTTCCCGCGGGACCCCCTCCCGAATTTTGAGAAGAAGGAGAGCACATATACATAGATACATGCACCCGGACCACCACCAGCCATCCAGTTACATTCCTTCCGGTTTTTAGACGAGATTCTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24482</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>156084</contig_pos>
        <strand></strand>
        <context>ctgaaaatct[G/T]aaatactgaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGAGTTTTTGAAAGTCTGAAATGCTGAAATTCTGAAATTCTGAAAATCT</left_flank>
        <right_flank>AAATACTGAAATTCTAGAATTCTTAGTTTCTGAAATTTTAAAAATCTGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTCAAACTAGACTTTGACCCCATAACATTCATAACAGCCTGTTTTCCTCCATTTTCCTGCTTTTCCAACTACTCAAAAATTTAAAATTCAAATGTTTAGTTGGAGCGGGAAGAAGCAAGGGATGGGTGGCTCTGAGTTGTTGTATGTATTTGTATGTACAAAATGCCCGGGGCCGGGTTTTTCGATGGGTCGTGAAAGCCCCCCCCCCCCTTCGTTTTGGTTTTGTATGGGGGCTTCTCTTTTTTCCCGCGGGACCCCCTCCCGAATTTTGAGAAGAAGGAGAGCACATATACATAGATACATGCACCCGGACCACCACCAGCCATCCAGTTACATTCCTTCCGGTTTTTAGACGAGATTCTGAAAAAATAAAATCCGAAGTTCTGAAATTCTGAATATCTAAAACTATGAAATTCTGAAATTTCGATATTCTGATATTCAGAAAATTCGAGTTTTTGAAAGTCTGAAATGCTGAAATTCTGAAATTCTGAAAATCTGAAATACTGAAATTCTAGAATTCTTAGTTTCTGAAATTTTAAAAATCTGAATGGATCCCTGAAACCCAAAATTCCAAACTCTTGCCTATTCGAAAATTGGATTTTTCTAGATTCTAAAAGTTCTGAAATTCAGAAATTTCATAATTTTTTTTTCTGAAAATTTTTTTTTTATTTTTCAAAATTTTAAAGATTATTAGATTCTTAGCATTGCGGTTTCTTATATTCTGAATTTCTGAAATTCTGAAACTCTAAAACTGCAAAATTCTGAAATTCGAAAATTCTGAAATCCTGAAATTCTGGAATTCGAAAATTCTGAAATTCTGAATTTCTGTAATTCAAAAATTCTGAAATTCGAAAATTCTGGAATTCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCAGAAATTCCATGATTTTTTTTTCTGAAAATTGATTAGATTCTTAGGATCCTTAGGATTCTCAGGATTCTTAGGATTTTTAGGAACTATGGAA</canonical>
            <polymorphic>CCTTCAAACTAGACTTTGACCCCATAACATTCATAACAGCCTGTTTTCCTCCATTTTCCTGCTTTTCCAACTACTCAAAAATTTAAAATTCAAATGTTTAGTTGGAGCGGGAAGAAGCAAGGGATGGGTGGCTCTGAGTTGTTGTATGTATTTGTATGTACAAAATGCCCGGGGCCGGGTTTTTCGATGGGTCGTGAAAGCCCCCCCCCCCCTTCGTTTTGGTTTTGTATGGGGGCTTCTCTTTTTTCCCGCGGGACCCCCTCCCGAATTTTGAGAAGAAGGAGAGCACATATACATAGATACATGCACCCGGACCACCACCAGCCATCCAGTTACATTCCTTCCGGTTTTTAGACGAGATTCTGAAAAAATAAAATCCGAAGTTCTGAAATTCTGAATATCTAAAACTATGAAATTCTGAAATTTCGATATTCTGATATTCAGAAAATTCGAGTTTTTGAAAGTCTGAAATGCTGAAATTCTGAAATTCTGAAAATCTKAAATACTGAAATTCTAGAATTCTTAGTTTCTGAAATTTTAAAAATCTGAATGGATCCCTGAAACCCAAAATTCCAAACTCTTGCCTATTCGAAAATTGGATTTTTCTAGATTCTAAAAGTTCTGAAATTCAGAAATTTCATAATTTTTTTTTCTGAAAATTTTTTTTTTATTTTTCAAAATTTTAAAGATTATTAGATTCTTAGCATTGCGGTTTCTTATATTCTGAATTTCTGAAATTCTGAAACTCTAAAACTGCAAAATTCTGAAATTCGAAAATTCTGAAATCCTGAAATTCTGGAATTCGAAAATTCTGAAATTCTGAATTTCTGTAATTCAAAAATTCTGAAATTCGAAAATTCTGGAATTCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCAGAAATTCCATGATTTTTTTTTCTGAAAATTGATTAGATTCTTAGGATCCTTAGGATTCTCAGGATTCTTAGGATTTTTAGGAACTATGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>229 135 76 71 68 32 32 32 24 24 24 24 23 23 16 16 16 16 15 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>229 135 76 71 68 40 32 32 24 24 24 24 23 23 16 16 16 16 15 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCCTTCCGGTTTTTAGAC</pcr_primer_p1>
		<pcr_primer_p2>CAATTTTCGAATAGGCAAGA</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>ATTCCTTCCGGTTTTTAGACGAGATTCTGAAAAAATAAAATCCGAAGTTCTGAAATTCTGAATATCTAAAACTATGAAATTCTGAAATTTCGATATTCTGATATTCAGAAAATTCGAGTTTTTGAAAGTCTGAAATGCTGAAATTCTGAAATTCTGAAAATCTGAAATACTGAAATTCTAGAATTCTTAGTTTCTGAAATTTTAAAAATCTGAATGGATCCCTGAAACCCAAAATTCCAAACTCTTGCCTATTCGAAAATTG</canonical_amplicon>
		<polymorphic_amplicon>ATTCCTTCCGGTTTTTAGACGAGATTCTGAAAAAATAAAATCCGAAGTTCTGAAATTCTGAATATCTAAAACTATGAAATTCTGAAATTTCGATATTCTGATATTCAGAAAATTCGAGTTTTTGAAAGTCTGAAATGCTGAAATTCTGAAATTCTGAAAATCTKAAATACTGAAATTCTAGAATTCTTAGTTTCTGAAATTTTAAAAATCTGAATGGATCCCTGAAACCCAAAATTCCAAACTCTTGCCTATTCGAAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24483</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>156189</contig_pos>
        <strand>+</strand>
        <context>ATTGGATTTT[C/T]CTAGATTCTR</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCCTGAAACCCAAAATTCCAAACTCTTGCCTATTCGAAAATTGGATTTT</left_flank>
        <right_flank>CTAGATTCTAAAAGTTCTGAAATTCAGAAATTTCATAATTTTTTTTTCTG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCGGGAAGAAGCAAGGGATGGGTGGCTCTGAGTTGTTGTATGTATTTGTATGTACAAAATGCCCGGGGCCGGGTTTTTCGATGGGTCGTGAAAGCCCCCCCCCCCCTTCGTTTTGGTTTTGTATGGGGGCTTCTCTTTTTTCCCGCGGGACCCCCTCCCGAATTTTGAGAAGAAGGAGAGCACATATACATAGATACATGCACCCGGACCACCACCAGCCATCCAGTTACATTCCTTCCGGTTTTTAGACGAGATTCTGAAAAAATAAAATCCGAAGTTCTGAAATTCTGAATATCTAAAACTATGAAATTCTGAAATTTCGATATTCTGATATTCAGAAAATTCGAGTTTTTGAAAGTCTGAAATGCTGAAATTCTGAAATTCTGAAAATCTGAAATACTGAAATTCTAGAATTCTTAGTTTCTGAAATTTTAAAAATCTGAATGGATCCCTGAAACCCAAAATTCCAAACTCTTGCCTATTCGAAAATTGGATTTTTCTAGATTCTAAAAGTTCTGAAATTCAGAAATTTCATAATTTTTTTTTCTGAAAATTTTTTTTTTATTTTTCAAAATTTTAAAGATTATTAGATTCTTAGCATTGCGGTTTCTTATATTCTGAATTTCTGAAATTCTGAAACTCTAAAACTGCAAAATTCTGAAATTCGAAAATTCTGAAATCCTGAAATTCTGGAATTCGAAAATTCTGAAATTCTGAATTTCTGTAATTCAAAAATTCTGAAATTCGAAAATTCTGGAATTCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCAGAAATTCCATGATTTTTTTTTCTGAAAATTGATTAGATTCTTAGGATCCTTAGGATTCTCAGGATTCTTAGGATTTTTAGGAACTATGGAATTCTGAAATTCAGAAAATCTGAAATACCGAAATTCTGAAATCCTGAAATTCTGAAATTCTGAATTTCCGAGGCTCTAAAATCCTGGACTTCCAGAATTTCACAAA</canonical>
            <polymorphic>AGCGGGAAGAAGCAAGGGATGGGTGGCTCTGAGTTGTTGTATGTATTTGTATGTACAAAATGCCCGGGGCCGGGTTTTTCGATGGGTCGTGAAAGCCCCCCCCCCCCTTCGTTTTGGTTTTGTATGGGGGCTTCTCTTTTTTCCCGCGGGACCCCCTCCCGAATTTTGAGAAGAAGGAGAGCACATATACATAGATACATGCACCCGGACCACCACCAGCCATCCAGTTACATTCCTTCCGGTTTTTAGACGAGATTCTGAAAAAATAAAATCCGAAGTTCTGAAATTCTGAATATCTAAAACTATGAAATTCTGAAATTTCGATATTCTGATATTCAGAAAATTCGAGTTTTTGAAAGTCTGAAATGCTGAAATTCTGAAATTCTGAAAATCTGAAATACTGAAATTCTAGAATTCTTAGTTTCTGAAATTTTAAAAATCTGAATGGATCCCTGAAACCCAAAATTCCAAACTCTTGCCTATTCGAAAATTGGATTTTYCTAGATTCTAAAAGTTCTGAAATTCAGAAATTTCATAATTTTTTTTTCTGAAAATTTTTTTTTTATTTTTCAAAATTTTAAAGATTATTAGATTCTTAGCATTGCGGTTTCTTATATTCTGAATTTCTGAAATTCTGAAACTCTAAAACTGCAAAATTCTGAAATTCGAAAATTCTGAAATCCTGAAATTCTGGAATTCGAAAATTCTGAAATTCTGAATTTCTGTAATTCAAAAATTCTGAAATTCGAAAATTCTGGAATTCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCAGAAATTCCATGATTTTTTTTTCTGAAAATTGATTAGATTCTTAGGATCCTTAGGATTCTCAGGATTCTTAGGATTTTTAGGAACTATGGAATTCTGAAATTCAGAAAATCTGAAATACCGAAATTCTGAAATCCTGAAATTCTGAAATTCTGAATTTCCGAGGCTCTAAAATCCTGGACTTCCAGAATTTCACAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>251 181 109 92 88 73 70 64 49 14 9</canonical_bands>
                <polymorphic_bands>273 251 109 88 73 70 64 49 14 9</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 408 92</canonical_bands>
                <polymorphic_bands>592 408</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCCTTCCGGTTTTTAGAC</pcr_primer_p1>
		<pcr_primer_p2>AAATGTTTCTTTTGGGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>881</pcr_amplicon_size>
		<canonical_amplicon>ATTCCTTCCGGTTTTTAGACGAGATTCTGAAAAAATAAAATCCGAAGTTCTGAAATTCTGAATATCTAAAACTATGAAATTCTGAAATTTCGATATTCTGATATTCAGAAAATTCGAGTTTTTGAAAGTCTGAAATGCTGAAATTCTGAAATTCTGAAAATCTGAAATACTGAAATTCTAGAATTCTTAGTTTCTGAAATTTTAAAAATCTGAATGGATCCCTGAAACCCAAAATTCCAAACTCTTGCCTATTCGAAAATTGGATTTTTCTAGATTCTAAAAGTTCTGA</canonical_amplicon>
		<polymorphic_amplicon>ATTCCTTCCGGTTTTTAGACGAGATTCTGAAAAAATAAAATCCGAAGTTCTGAAATTCTGAATATCTAAAACTATGAAATTCTGAAATTTCGATATTCTGATATTCAGAAAATTCGAGTTTTTGAAAGTCTGAAATGCTGAAATTCTGAAATTCTGAAAATCTGAAATACTGAAATTCTAGAATTCTTAGTTTCTGAAATTTTAAAAATCTGAATGGATCCCTGAAACCCAAAATTCCAAACTCTTGCCTATTCGAAAATTGGATTTTYCTAGATTCTAAAAGTTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24484</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>156199</contig_pos>
        <strand>+</strand>
        <context>YCTAGATTCT[A/G]AAAGTTCTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAAAATTCCAAACTCTTGCCTATTCGAAAATTGGATTTTTCTAGATTCT</left_flank>
        <right_flank>AAAGTTCTGAAATTCAGAAATTTCATAATTTTTTTTTCTGAAAATTTTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCAAGGGATGGGTGGCTCTGAGTTGTTGTATGTATTTGTATGTACAAAATGCCCGGGGCCGGGTTTTTCGATGGGTCGTGAAAGCCCCCCCCCCCCTTCGTTTTGGTTTTGTATGGGGGCTTCTCTTTTTTCCCGCGGGACCCCCTCCCGAATTTTGAGAAGAAGGAGAGCACATATACATAGATACATGCACCCGGACCACCACCAGCCATCCAGTTACATTCCTTCCGGTTTTTAGACGAGATTCTGAAAAAATAAAATCCGAAGTTCTGAAATTCTGAATATCTAAAACTATGAAATTCTGAAATTTCGATATTCTGATATTCAGAAAATTCGAGTTTTTGAAAGTCTGAAATGCTGAAATTCTGAAATTCTGAAAATCTGAAATACTGAAATTCTAGAATTCTTAGTTTCTGAAATTTTAAAAATCTGAATGGATCCCTGAAACCCAAAATTCCAAACTCTTGCCTATTCGAAAATTGGATTTTTCTAGATTCTAAAAGTTCTGAAATTCAGAAATTTCATAATTTTTTTTTCTGAAAATTTTTTTTTTATTTTTCAAAATTTTAAAGATTATTAGATTCTTAGCATTGCGGTTTCTTATATTCTGAATTTCTGAAATTCTGAAACTCTAAAACTGCAAAATTCTGAAATTCGAAAATTCTGAAATCCTGAAATTCTGGAATTCGAAAATTCTGAAATTCTGAATTTCTGTAATTCAAAAATTCTGAAATTCGAAAATTCTGGAATTCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCAGAAATTCCATGATTTTTTTTTCTGAAAATTGATTAGATTCTTAGGATCCTTAGGATTCTCAGGATTCTTAGGATTTTTAGGAACTATGGAATTCTGAAATTCAGAAAATCTGAAATACCGAAATTCTGAAATCCTGAAATTCTGAAATTCTGAATTTCCGAGGCTCTAAAATCCTGGACTTCCAGAATTTCACAAATTTTCAGATT</canonical>
            <polymorphic>AGCAAGGGATGGGTGGCTCTGAGTTGTTGTATGTATTTGTATGTACAAAATGCCCGGGGCCGGGTTTTTCGATGGGTCGTGAAAGCCCCCCCCCCCCTTCGTTTTGGTTTTGTATGGGGGCTTCTCTTTTTTCCCGCGGGACCCCCTCCCGAATTTTGAGAAGAAGGAGAGCACATATACATAGATACATGCACCCGGACCACCACCAGCCATCCAGTTACATTCCTTCCGGTTTTTAGACGAGATTCTGAAAAAATAAAATCCGAAGTTCTGAAATTCTGAATATCTAAAACTATGAAATTCTGAAATTTCGATATTCTGATATTCAGAAAATTCGAGTTTTTGAAAGTCTGAAATGCTGAAATTCTGAAATTCTGAAAATCTGAAATACTGAAATTCTAGAATTCTTAGTTTCTGAAATTTTAAAAATCTGAATGGATCCCTGAAACCCAAAATTCCAAACTCTTGCCTATTCGAAAATTGGATTTTTCTAGATTCTRAAAGTTCTGAAATTCAGAAATTTCATAATTTTTTTTTCTGAAAATTTTTTTTTTATTTTTCAAAATTTTAAAGATTATTAGATTCTTAGCATTGCGGTTTCTTATATTCTGAATTTCTGAAATTCTGAAACTCTAAAACTGCAAAATTCTGAAATTCGAAAATTCTGAAATCCTGAAATTCTGGAATTCGAAAATTCTGAAATTCTGAATTTCTGTAATTCAAAAATTCTGAAATTCGAAAATTCTGGAATTCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCAGAAATTCCATGATTTTTTTTTCTGAAAATTGATTAGATTCTTAGGATCCTTAGGATTCTCAGGATTCTTAGGATTTTTAGGAACTATGGAATTCTGAAATTCAGAAAATCTGAAATACCGAAATTCTGAAATCCTGAAATTCTGAAATTCTGAATTTCCGAGGCTCTAAAATCCTGGACTTCCAGAATTTCACAAATTTTCAGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCTTCCGGTTTTTAGAC</pcr_primer_p1>
		<pcr_primer_p2>AAATGTTTCTTTTGGGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>881</pcr_amplicon_size>
		<canonical_amplicon>ATTCCTTCCGGTTTTTAGACGAGATTCTGAAAAAATAAAATCCGAAGTTCTGAAATTCTGAATATCTAAAACTATGAAATTCTGAAATTTCGATATTCTGATATTCAGAAAATTCGAGTTTTTGAAAGTCTGAAATGCTGAAATTCTGAAATTCTGAAAATCTGAAATACTGAAATTCTAGAATTCTTAGTTTCTGAAATTTTAAAAATCTGAATGGATCCCTGAAACCCAAAATTCCAAACTCTTGCCTATTCGAAAATTGGATTTTTCTAGATTCTAAAAGTTCTGAAATTCAGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTCCTTCCGGTTTTTAGACGAGATTCTGAAAAAATAAAATCCGAAGTTCTGAAATTCTGAATATCTAAAACTATGAAATTCTGAAATTTCGATATTCTGATATTCAGAAAATTCGAGTTTTTGAAAGTCTGAAATGCTGAAATTCTGAAATTCTGAAAATCTGAAATACTGAAATTCTAGAATTCTTAGTTTCTGAAATTTTAAAAATCTGAATGGATCCCTGAAACCCAAAATTCCAAACTCTTGCCTATTCGAAAATTGGATTTTTCTAGATTCTRAAAGTTCTGAAATTCAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24485</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>167465</contig_pos>
        <strand>+</strand>
        <context>GTAGAACTAM[A/T]GAGTTGATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTTTTTCCAGAAAGCTCTAGGAAATTTCGTTGGATTACTGTAGAACTAA</left_flank>
        <right_flank>GAGTTGATTTTTTTTGAAAAAATATTGACTTTTTCATTAAACTTTTTCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAATGAGTCAGAAATCAAATGATAAATGTTTCTTATCACTATAACAGTTGTTTTATCATAAGTACATATAGATAAGTCATGTGGCATTTTTTCAGAATTTCGGTGGTTGGGAAATTTTTTAAAAATTGAATTTTGGCTAGACACTCGACCATATTTTAATTTATTTAAAATTTTGAAATTCGAAATTTTTTTCAGATTCTGAATATTTTTTCCTACAGTAACCCTGTCTTTTGTTTCCGGTCTATTTCCGATGGAACTTTTTTTTGTTTTCCGTGATATTATTAGTTTTTCCCCCCGAAAACGGACAATCGGCGGGCCGCCGATTGTCGTTCCAGAAGAAAAAAAAACAAGAAAAGACAACAAATCGAATCGAATAATTCATTAGAACAAGAATAAGAAGAATTTTCTGTGTATGTTGCCTCTTTTTTTGGTTCTTGGAATTTTCCTGGTTTTTCCAGAAAGCTCTAGGAAATTTCGTTGGATTACTGTAGAACTAATGAGTTGATTTTTTTTGAAAAAATATTGACTTTTTCATTAAACTTTTTCATTACACAATTTCAGAACCCCAAATCTTAGAATCCAAAATTCCATTTTTCAAAAACAAAAACGGAAAATTCTGAAAATGGTAGAAATTTTCAATTTCTACCATTTTTCAAGTTTTCTAGACTTCTGAATGCCAAAATTTCGGATTTTTCAAATATCTGGAACGTTCAGAAATTCAGAAGGTCTGAAATTTTGAGATTCAGAAGTTCCAGGAAATTATTTTCAGCGCAATCTACCAAAAATGCTCCCCCAAAAAATTGAAAATTAGTCCCAAAAAAATAGAGCTCCTAGTCCGTGATTGAAATGACACCAACCAACCACACACATGTTTTTCTTCTTCATGGACCCTTCTTTTTCTATTTTCTTTTCTTTTTTGCCGTCACTCTGTCATGTTTTATGTGTTTGTATGTGAGAAAAGAGAAGAAACAGACAGACCTTCTTCTGGATTTTTTGTT</canonical>
            <polymorphic>TTTAATGAGTCAGAAATCAAATGATAAATGTTTCTTATCACTATAACAGTTGTTTTATCATAAGTACATATAGATAAGTCATGTGGCATTTTTTCAGAATTTCGGTGGTTGGGAAATTTTTTAAAAATTGAATTTTGGCTAGACACTCGACCATATTTTAATTTATTTAAAATTTTGAAATTCGAAATTTTTTTCAGATTCTGAATATTTTTTCCTACAGTAACCCTGTCTTTTGTTTCCGGTCTATTTCCGATGGAACTTTTTTTTGTTTTCCGTGATATTATTAGTTTTTCCCCCCGAAAACGGACAATCGGCGGGCCGCCGATTGTCGTTCCAGAAGAAAAAAAAACAAGAAAAGACAACAAATCGAATCGAATAATTCATTAGAACAAGAATAAGAAGAATTTTCTGTGTATGTTGCCTCTTTTTTTGGTTCTTGGAATTTTCCTGGTTTTTCCAGAAAGCTCTAGGAAATTTCGTTGGATTACTGTAGAACTAAWGAGTTGATTTTTTTTGAAAAAATATTGACTTTTTCATTAAACTTTTTCATTACACAATTTCAGAACCCCAAATCTTAGAATCCAAAATTCCATTTTTCAAAAACAAAAACGGAAAATTCTGAAAATGGTAGAAATTTTCAATTTCTACCATTTTTCAAGTTTTCTAGACTTCTGAATGCCAAAATTTCGGATTTTTCAAATATCTGGAACGTTCAGAAATTCAGAAGGTCTGAAATTTTGAGATTCAGAAGTTCCAGGAAATTATTTTCAGCGCAATCTACCAAAAATGCTCCCCCAAAAAATTGAAAATTAGTCCCAAAAAAATAGAGCTCCTAGTCCGTGATTGAAATGACACCAACCAACCACACACATGTTTTTCTTCTTCATGGACCCTTCTTTTTCTATTTTCTTTTCTTTTTTGCCGTCACTCTGTCATGTTTTATGTGTTTGTATGTGAGAAAAGAGAAGAAACAGACAGACCTTCTTCTGGATTTTTTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACAAGAAAAGACAACAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATGGAATTTTGGATTCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAACAAGAAAAGACAACAAATCGAATCGAATAATTCATTAGAACAAGAATAAGAAGAATTTTCTGTGTATGTTGCCTCTTTTTTTGGTTCTTGGAATTTTCCTGGTTTTTCCAGAAAGCTCTAGGAAATTTCGTTGGATTACTGTAGAACTAATGAGTTGATTTTTTTTGAAAAAATATTGACTTTTTCATTAAACTTTTTCATTACACAATTTCAGAACCCCAAATCTTAGAATCCAAAATTCCATTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAACAAGAAAAGACAACAAATCGAATCGAATAATTCATTAGAACAAGAATAAGAAGAATTTTCTGTGTATGTTGCCTCTTTTTTTGGTTCTTGGAATTTTCCTGGTTTTTCCAGAAAGCTCTAGGAAATTTCGTTGGATTACTGTAGAACTAAWGAGTTGATTTTTTTTGAAAAAATATTGACTTTTTCATTAAACTTTTTCATTACACAATTTCAGAACCCCAAATCTTAGAATCCAAAATTCCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24486</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>167506</contig_pos>
        <strand>+</strand>
        <context>TTTTCATTAA[A/T]CTTTTTCATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGAACTAATGAGTTGATTTTTTTTGAAAAAATATTGACTTTTTCATTAA</left_flank>
        <right_flank>CTTTTTCATTACACAATTTCAGAACCCCAAATCTTAGAATCCAAAATTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAACAGTTGTTTTATCATAAGTACATATAGATAAGTCATGTGGCATTTTTTCAGAATTTCGGTGGTTGGGAAATTTTTTAAAAATTGAATTTTGGCTAGACACTCGACCATATTTTAATTTATTTAAAATTTTGAAATTCGAAATTTTTTTCAGATTCTGAATATTTTTTCCTACAGTAACCCTGTCTTTTGTTTCCGGTCTATTTCCGATGGAACTTTTTTTTGTTTTCCGTGATATTATTAGTTTTTCCCCCCGAAAACGGACAATCGGCGGGCCGCCGATTGTCGTTCCAGAAGAAAAAAAAACAAGAAAAGACAACAAATCGAATCGAATAATTCATTAGAACAAGAATAAGAAGAATTTTCTGTGTATGTTGCCTCTTTTTTTGGTTCTTGGAATTTTCCTGGTTTTTCCAGAAAGCTCTAGGAAATTTCGTTGGATTACTGTAGAACTAATGAGTTGATTTTTTTTGAAAAAATATTGACTTTTTCATTAAACTTTTTCATTACACAATTTCAGAACCCCAAATCTTAGAATCCAAAATTCCATTTTTCAAAAACAAAAACGGAAAATTCTGAAAATGGTAGAAATTTTCAATTTCTACCATTTTTCAAGTTTTCTAGACTTCTGAATGCCAAAATTTCGGATTTTTCAAATATCTGGAACGTTCAGAAATTCAGAAGGTCTGAAATTTTGAGATTCAGAAGTTCCAGGAAATTATTTTCAGCGCAATCTACCAAAAATGCTCCCCCAAAAAATTGAAAATTAGTCCCAAAAAAATAGAGCTCCTAGTCCGTGATTGAAATGACACCAACCAACCACACACATGTTTTTCTTCTTCATGGACCCTTCTTTTTCTATTTTCTTTTCTTTTTTGCCGTCACTCTGTCATGTTTTATGTGTTTGTATGTGAGAAAAGAGAAGAAACAGACAGACCTTCTTCTGGATTTTTTGTTAATCATTTAGTGTATTGGAAGAGAGAGAGAATGGGAGCGTG</canonical>
            <polymorphic>TATAACAGTTGTTTTATCATAAGTACATATAGATAAGTCATGTGGCATTTTTTCAGAATTTCGGTGGTTGGGAAATTTTTTAAAAATTGAATTTTGGCTAGACACTCGACCATATTTTAATTTATTTAAAATTTTGAAATTCGAAATTTTTTTCAGATTCTGAATATTTTTTCCTACAGTAACCCTGTCTTTTGTTTCCGGTCTATTTCCGATGGAACTTTTTTTTGTTTTCCGTGATATTATTAGTTTTTCCCCCCGAAAACGGACAATCGGCGGGCCGCCGATTGTCGTTCCAGAAGAAAAAAAAACAAGAAAAGACAACAAATCGAATCGAATAATTCATTAGAACAAGAATAAGAAGAATTTTCTGTGTATGTTGCCTCTTTTTTTGGTTCTTGGAATTTTCCTGGTTTTTCCAGAAAGCTCTAGGAAATTTCGTTGGATTACTGTAGAACTAATGAGTTGATTTTTTTTGAAAAAATATTGACTTTTTCATTAAWCTTTTTCATTACACAATTTCAGAACCCCAAATCTTAGAATCCAAAATTCCATTTTTCAAAAACAAAAACGGAAAATTCTGAAAATGGTAGAAATTTTCAATTTCTACCATTTTTCAAGTTTTCTAGACTTCTGAATGCCAAAATTTCGGATTTTTCAAATATCTGGAACGTTCAGAAATTCAGAAGGTCTGAAATTTTGAGATTCAGAAGTTCCAGGAAATTATTTTCAGCGCAATCTACCAAAAATGCTCCCCCAAAAAATTGAAAATTAGTCCCAAAAAAATAGAGCTCCTAGTCCGTGATTGAAATGACACCAACCAACCACACACATGTTTTTCTTCTTCATGGACCCTTCTTTTTCTATTTTCTTTTCTTTTTTGCCGTCACTCTGTCATGTTTTATGTGTTTGTATGTGAGAAAAGAGAAGAAACAGACAGACCTTCTTCTGGATTTTTTGTTAATCATTTAGTGTATTGGAAGAGAGAGAGAATGGGAGCGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACAAGAAAAGACAACAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATGGAATTTTGGATTCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAACAAGAAAAGACAACAAATCGAATCGAATAATTCATTAGAACAAGAATAAGAAGAATTTTCTGTGTATGTTGCCTCTTTTTTTGGTTCTTGGAATTTTCCTGGTTTTTCCAGAAAGCTCTAGGAAATTTCGTTGGATTACTGTAGAACTAATGAGTTGATTTTTTTTGAAAAAATATTGACTTTTTCATTAAACTTTTTCATTACACAATTTCAGAACCCCAAATCTTAGAATCCAAAATTCCATTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAACAAGAAAAGACAACAAATCGAATCGAATAATTCATTAGAACAAGAATAAGAAGAATTTTCTGTGTATGTTGCCTCTTTTTTTGGTTCTTGGAATTTTCCTGGTTTTTCCAGAAAGCTCTAGGAAATTTCGTTGGATTACTGTAGAACTAATGAGTTGATTTTTTTTGAAAAAATATTGACTTTTTCATTAAWCTTTTTCATTACACAATTTCAGAACCCCAAATCTTAGAATCCAAAATTCCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24487</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>167524</contig_pos>
        <strand>+</strand>
        <context>ATTACACAAT[C/G]TCAGAACCCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTTTTGAAAAAATATTGACTTTTTCATTAAACTTTTTCATTACACAAT</left_flank>
        <right_flank>TCAGAACCCCAAATCTTAGAATCCAAAATTCCATTTTTCAAAAACAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAGTACATATAGATAAGTCATGTGGCATTTTTTCAGAATTTCGGTGGTTGGGAAATTTTTTAAAAATTGAATTTTGGCTAGACACTCGACCATATTTTAATTTATTTAAAATTTTGAAATTCGAAATTTTTTTCAGATTCTGAATATTTTTTCCTACAGTAACCCTGTCTTTTGTTTCCGGTCTATTTCCGATGGAACTTTTTTTTGTTTTCCGTGATATTATTAGTTTTTCCCCCCGAAAACGGACAATCGGCGGGCCGCCGATTGTCGTTCCAGAAGAAAAAAAAACAAGAAAAGACAACAAATCGAATCGAATAATTCATTAGAACAAGAATAAGAAGAATTTTCTGTGTATGTTGCCTCTTTTTTTGGTTCTTGGAATTTTCCTGGTTTTTCCAGAAAGCTCTAGGAAATTTCGTTGGATTACTGTAGAACTAATGAGTTGATTTTTTTTGAAAAAATATTGACTTTTTCATTAAACTTTTTCATTACACAATTTCAGAACCCCAAATCTTAGAATCCAAAATTCCATTTTTCAAAAACAAAAACGGAAAATTCTGAAAATGGTAGAAATTTTCAATTTCTACCATTTTTCAAGTTTTCTAGACTTCTGAATGCCAAAATTTCGGATTTTTCAAATATCTGGAACGTTCAGAAATTCAGAAGGTCTGAAATTTTGAGATTCAGAAGTTCCAGGAAATTATTTTCAGCGCAATCTACCAAAAATGCTCCCCCAAAAAATTGAAAATTAGTCCCAAAAAAATAGAGCTCCTAGTCCGTGATTGAAATGACACCAACCAACCACACACATGTTTTTCTTCTTCATGGACCCTTCTTTTTCTATTTTCTTTTCTTTTTTGCCGTCACTCTGTCATGTTTTATGTGTTTGTATGTGAGAAAAGAGAAGAAACAGACAGACCTTCTTCTGGATTTTTTGTTAATCATTTAGTGTATTGGAAGAGAGAGAGAATGGGAGCGTGGGACGTATCTCCTCGGAT</canonical>
            <polymorphic>ATAAGTACATATAGATAAGTCATGTGGCATTTTTTCAGAATTTCGGTGGTTGGGAAATTTTTTAAAAATTGAATTTTGGCTAGACACTCGACCATATTTTAATTTATTTAAAATTTTGAAATTCGAAATTTTTTTCAGATTCTGAATATTTTTTCCTACAGTAACCCTGTCTTTTGTTTCCGGTCTATTTCCGATGGAACTTTTTTTTGTTTTCCGTGATATTATTAGTTTTTCCCCCCGAAAACGGACAATCGGCGGGCCGCCGATTGTCGTTCCAGAAGAAAAAAAAACAAGAAAAGACAACAAATCGAATCGAATAATTCATTAGAACAAGAATAAGAAGAATTTTCTGTGTATGTTGCCTCTTTTTTTGGTTCTTGGAATTTTCCTGGTTTTTCCAGAAAGCTCTAGGAAATTTCGTTGGATTACTGTAGAACTAATGAGTTGATTTTTTTTGAAAAAATATTGACTTTTTCATTAAACTTTTTCATTACACAATSTCAGAACCCCAAATCTTAGAATCCAAAATTCCATTTTTCAAAAACAAAAACGGAAAATTCTGAAAATGGTAGAAATTTTCAATTTCTACCATTTTTCAAGTTTTCTAGACTTCTGAATGCCAAAATTTCGGATTTTTCAAATATCTGGAACGTTCAGAAATTCAGAAGGTCTGAAATTTTGAGATTCAGAAGTTCCAGGAAATTATTTTCAGCGCAATCTACCAAAAATGCTCCCCCAAAAAATTGAAAATTAGTCCCAAAAAAATAGAGCTCCTAGTCCGTGATTGAAATGACACCAACCAACCACACACATGTTTTTCTTCTTCATGGACCCTTCTTTTTCTATTTTCTTTTCTTTTTTGCCGTCACTCTGTCATGTTTTATGTGTTTGTATGTGAGAAAAGAGAAGAAACAGACAGACCTTCTTCTGGATTTTTTGTTAATCATTTAGTGTATTGGAAGAGAGAGAGAATGGGAGCGTGGGACGTATCTCCTCGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>252 192 83 43 41 38 38 35 32 30 29 29 26 25 18 17 16 11 11 8 7 7 7 5</canonical_bands>
                <polymorphic_bands>252 192 113 43 41 38 38 35 32 29 29 26 25 18 17 16 11 11 8 7 7 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTGTATGTTGCCTCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGAAAAATGGTAGAAATTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGTGTATGTTGCCTCTTTTTTTGGTTCTTGGAATTTTCCTGGTTTTTCCAGAAAGCTCTAGGAAATTTCGTTGGATTACTGTAGAACTAATGAGTTGATTTTTTTTGAAAAAATATTGACTTTTTCATTAAACTTTTTCATTACACAATTTCAGAACCCCAAATCTTAGAATCCAAAATTCCATTTTTCAAAAACAAAAACGGAAAATTCTGAAAATGGTAGAAATTTTCAATTTCTACCATTTTTCAA</canonical_amplicon>
		<polymorphic_amplicon>CTGTGTATGTTGCCTCTTTTTTTGGTTCTTGGAATTTTCCTGGTTTTTCCAGAAAGCTCTAGGAAATTTCGTTGGATTACTGTAGAACTAATGAGTTGATTTTTTTTGAAAAAATATTGACTTTTTCATTAAACTTTTTCATTACACAATSTCAGAACCCCAAATCTTAGAATCCAAAATTCCATTTTTCAAAAACAAAAACGGAAAATTCTGAAAATGGTAGAAATTTTCAATTTCTACCATTTTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24488</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>169127</contig_pos>
        <strand>+</strand>
        <context>GAATCATCCC[C/T]ATTTTYGGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAAGGTTTTGGAATCTCTAACTTTTAGAAACTAAAAAAAGAATCATCCC</left_flank>
        <right_flank>ATTTTTGGTTTTTCGGTTTTCAATTTTTTTTCAATTCTGAAAACATTCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTCCCTCTGGAGCACCCTGTGGGATGCTCCAATCGTCGTCATTCCATTCGTTCTCCCTTGAAACACCCCATTTCTTCTATTTTTCCCACTTTTTCTTATCAATTTTGTCAGAGCAGGAGCACCTACGTGCTCCTGCTCTCAAGAATTTTTTTCATGTCGGAATAAAAACATTTAGGTCTGGAAAATGGTTTATTGCGATTCCTTTTGTGTTAGATCCTGGAAAAGCCGAAAATATATGAAAATCAAATTTTCCAAAGCTATGTTTTTGACTTATCTGGCAAATTCTAATATTTTCACTTTTTTTTTTAATTTTCAGAACTTTCGACTTTCCTACAGATCCTCCGAACTTTCGAGGAATTCGGGATTTTCTATTTTCTAGAATTTTTTCGGATTTTCTGAGTAATCGACTTTGAATTTCTAGGATTCGAAAAAGTTTCTTTTCAAGGTTTCAAGGTTTTGGAATCTCTAACTTTTAGAAACTAAAAAAAGAATCATCCCAATTTTTGGTTTTTCGGTTTTCAATTTTTTTTCAATTCTGAAAACATTCTGACATTCTGGAATTTCGGAAAAACTAGAGTTTCAAAATCCCAATTTCCACAGTCCCAGATTCAAAATTTTCAAATTTCGAAATTTCAGACAATTTTCCAATGATCGAATTCTGAAACTTCCGAAATCTTCTAGTATCTTGAATTCTCTAATCATTACTAATAACATTCACCCGATTCTGTATGTGCGTATGTATGTAGCGCACTTTTTCACCCATTCAAAGTCAACCGATCAAGCTGAAACCTGGTCCGATAGATCAGAATTGTGCCTTAGTTGATGCCCGAACTTTTGGTTTTTCTAAATTTTGATATTGAAGTTTTCTGAAGACGTTCCTTGGTTTCACCACACAAAACGGTGATGGGCAGAAAGGGCGATGGTACAGGGCGACCGGAGGCCAGGAGGTTCAGCCCCGAAGGGGCGTAAACCGACTGGAAGTTTGAAAATTAGGAATTC</canonical>
            <polymorphic>GGTCCCTCTGGAGCACCCTGTGGGATGCTCCAATCGTCGTCATTCCATTCGTTCTCCCTTGAAACACCCCATTTCTTCTATTTTTCCCACTTTTTCTTATCAATTTTGTCAGAGCAGGAGCACCTACGTGCTCCTGCTCTCAAGAATTTTTTTCATGTCGGAATAAAAACATTTAGGTCTGGAAAATGGTTTATTGCGATTCCTTTTGTGTTAGATCCTGGAAAAGCCGAAAATATATGAAAATCAAATTTTCCAAAGCTATGTTTTTGACTTATCTGGCAAATTCTAATATTTTCACTTTTTTTTTTAATTTTCAGAACTTTCGACTTTCCTACAGATCCTCCGAACTTTCGAGGAATTCGGGATTTTCTATTTTCTAGAATTTTTTCGGATTTTCTGAGTAATCGACTTTGAATTTCTAGGATTCGAAAAAGTTTCTTTTCAAGGTTTCAAGGTTTTGGAATCTCTAACTTTTAGAAACTAAAAAAAGAATCATCCCYATTTTTGGTTTTTCGGTTTTCAATTTTTTTTCAATTCTGAAAACATTCTGACATTCTGGAATTTCGGAAAAACTAGAGTTTCAAAATCCCAATTTCCACAGTCCCAGATTCAAAATTTTCAAATTTCGAAATTTCAGACAATTTTCCAATGATCGAATTCTGAAACTTCCGAAATCTTCTAGTATCTTGAATTCTCTAATCATTACTAATAACATTCACCCGATTCTGTATGTGCGTATGTATGTAGCGCACTTTTTCACCCATTCAAAGTCAACCGATCAAGCTGAAACCTGGTCCGATAGATCAGAATTGTGCCTTAGTTGATGCCCGAACTTTTGGTTTTTCTAAATTTTGATATTGAAGTTTTCTGAAGACGTTCCTTGGTTTCACCACACAAAACGGTGATGGGCAGAAAGGGCGATGGTACAGGGCGACCGGAGGCCAGGAGGTTCAGCCCCGAAGGGGCGTAAACCGACTGGAAGTTTGAAAATTAGGAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNTGG</site>
                <isoschizomers>
                    <enzyme>AccB7I</enzyme>
                    <enzyme>PflBI</enzyme>
                    <enzyme>PflMI</enzyme>
                    <enzyme>Van91I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>141 118 102 101 86 48 43 40 35 34 33 31 27 27 24 23 22 16 11 10 8 8 7 5</canonical_bands>
                <polymorphic_bands>141 118 108 102 101 48 43 40 35 34 33 31 27 27 24 23 16 11 10 8 8 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAGGTTTTGGAATCTCTA</pcr_primer_p1>
		<pcr_primer_p2>TAGAGGAATCTGGAAGGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>593</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAGGTTTTGGAATCTCTAACTTTTAGAAACTAAAAAAAGAATCATCCCAATTTTTGGTTTTTCGGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAGGTTTTGGAATCTCTAACTTTTAGAAACTAAAAAAAGAATCATCCCYATTTTTGGTTTTTCGGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24489</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>169164</contig_pos>
        <strand></strand>
        <context>tttttcaatt[C/T]tgaaaacatt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGAATCATCCCAATTTTTGGTTTTTCGGTTTTCAATTTTTTTTCAATT</left_flank>
        <right_flank>TGAAAACATTCTGACATTCTGGAATTTCGGAAAAACTAGAGTTTCAAAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTCATTCCATTCGTTCTCCCTTGAAACACCCCATTTCTTCTATTTTTCCCACTTTTTCTTATCAATTTTGTCAGAGCAGGAGCACCTACGTGCTCCTGCTCTCAAGAATTTTTTTCATGTCGGAATAAAAACATTTAGGTCTGGAAAATGGTTTATTGCGATTCCTTTTGTGTTAGATCCTGGAAAAGCCGAAAATATATGAAAATCAAATTTTCCAAAGCTATGTTTTTGACTTATCTGGCAAATTCTAATATTTTCACTTTTTTTTTTAATTTTCAGAACTTTCGACTTTCCTACAGATCCTCCGAACTTTCGAGGAATTCGGGATTTTCTATTTTCTAGAATTTTTTCGGATTTTCTGAGTAATCGACTTTGAATTTCTAGGATTCGAAAAAGTTTCTTTTCAAGGTTTCAAGGTTTTGGAATCTCTAACTTTTAGAAACTAAAAAAAGAATCATCCCAATTTTTGGTTTTTCGGTTTTCAATTTTTTTTCAATTCTGAAAACATTCTGACATTCTGGAATTTCGGAAAAACTAGAGTTTCAAAATCCCAATTTCCACAGTCCCAGATTCAAAATTTTCAAATTTCGAAATTTCAGACAATTTTCCAATGATCGAATTCTGAAACTTCCGAAATCTTCTAGTATCTTGAATTCTCTAATCATTACTAATAACATTCACCCGATTCTGTATGTGCGTATGTATGTAGCGCACTTTTTCACCCATTCAAAGTCAACCGATCAAGCTGAAACCTGGTCCGATAGATCAGAATTGTGCCTTAGTTGATGCCCGAACTTTTGGTTTTTCTAAATTTTGATATTGAAGTTTTCTGAAGACGTTCCTTGGTTTCACCACACAAAACGGTGATGGGCAGAAAGGGCGATGGTACAGGGCGACCGGAGGCCAGGAGGTTCAGCCCCGAAGGGGCGTAAACCGACTGGAAGTTTGAAAATTAGGAATTCTGAAATTCCACGTTTCCTCGAAACCTTCCAGATTCCT</canonical>
            <polymorphic>CGTCATTCCATTCGTTCTCCCTTGAAACACCCCATTTCTTCTATTTTTCCCACTTTTTCTTATCAATTTTGTCAGAGCAGGAGCACCTACGTGCTCCTGCTCTCAAGAATTTTTTTCATGTCGGAATAAAAACATTTAGGTCTGGAAAATGGTTTATTGCGATTCCTTTTGTGTTAGATCCTGGAAAAGCCGAAAATATATGAAAATCAAATTTTCCAAAGCTATGTTTTTGACTTATCTGGCAAATTCTAATATTTTCACTTTTTTTTTTAATTTTCAGAACTTTCGACTTTCCTACAGATCCTCCGAACTTTCGAGGAATTCGGGATTTTCTATTTTCTAGAATTTTTTCGGATTTTCTGAGTAATCGACTTTGAATTTCTAGGATTCGAAAAAGTTTCTTTTCAAGGTTTCAAGGTTTTGGAATCTCTAACTTTTAGAAACTAAAAAAAGAATCATCCCAATTTTTGGTTTTTCGGTTTTCAATTTTTTTTCAATTYTGAAAACATTCTGACATTCTGGAATTTCGGAAAAACTAGAGTTTCAAAATCCCAATTTCCACAGTCCCAGATTCAAAATTTTCAAATTTCGAAATTTCAGACAATTTTCCAATGATCGAATTCTGAAACTTCCGAAATCTTCTAGTATCTTGAATTCTCTAATCATTACTAATAACATTCACCCGATTCTGTATGTGCGTATGTATGTAGCGCACTTTTTCACCCATTCAAAGTCAACCGATCAAGCTGAAACCTGGTCCGATAGATCAGAATTGTGCCTTAGTTGATGCCCGAACTTTTGGTTTTTCTAAATTTTGATATTGAAGTTTTCTGAAGACGTTCCTTGGTTTCACCACACAAAACGGTGATGGGCAGAAAGGGCGATGGTACAGGGCGACCGGAGGCCAGGAGGTTCAGCCCCGAAGGGGCGTAAACCGACTGGAAGTTTGAAAATTAGGAATTCTGAAATTCCACGTTTCCTCGAAACCTTCCAGATTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>156 140 132 127 74 70 63 49 46 36 28 25 17 11 9 9 8</canonical_bands>
                <polymorphic_bands>156 151 132 127 74 70 63 49 46 36 28 25 17 9 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGTTTTGGAATCTCTAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>TAGAGGAATCTGGAAGGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>588</pcr_amplicon_size>
		<canonical_amplicon>AGGTTTTGGAATCTCTAACTTTTAGAAACTAAAAAAAGAATCATCCCAATTTTTGGTTTTTCGGTTTTCAATTTTTTTTCAATTCTGAAAACATTCTGACATTCT</canonical_amplicon>
		<polymorphic_amplicon>AGGTTTTGGAATCTCTAACTTTTAGAAACTAAAAAAAGAATCATCCCAATTTTTGGTTTTTCGGTTTTCAATTTTTTTTCAATTYTGAAAACATTCTGACATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24490</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>169201</contig_pos>
        <strand></strand>
        <context>tcggaaaaac[T/A]agagtttcaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTTTTTTCAATTCTGAAAACATTCTGACATTCTGGAATTTCGGAAAAAC</left_flank>
        <right_flank>AGAGTTTCAAAATCCCAATTTCCACAGTCCCAGATTCAAAATTTTCAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCTATTTTTCCCACTTTTTCTTATCAATTTTGTCAGAGCAGGAGCACCTACGTGCTCCTGCTCTCAAGAATTTTTTTCATGTCGGAATAAAAACATTTAGGTCTGGAAAATGGTTTATTGCGATTCCTTTTGTGTTAGATCCTGGAAAAGCCGAAAATATATGAAAATCAAATTTTCCAAAGCTATGTTTTTGACTTATCTGGCAAATTCTAATATTTTCACTTTTTTTTTTAATTTTCAGAACTTTCGACTTTCCTACAGATCCTCCGAACTTTCGAGGAATTCGGGATTTTCTATTTTCTAGAATTTTTTCGGATTTTCTGAGTAATCGACTTTGAATTTCTAGGATTCGAAAAAGTTTCTTTTCAAGGTTTCAAGGTTTTGGAATCTCTAACTTTTAGAAACTAAAAAAAGAATCATCCCAATTTTTGGTTTTTCGGTTTTCAATTTTTTTTCAATTCTGAAAACATTCTGACATTCTGGAATTTCGGAAAAACTAGAGTTTCAAAATCCCAATTTCCACAGTCCCAGATTCAAAATTTTCAAATTTCGAAATTTCAGACAATTTTCCAATGATCGAATTCTGAAACTTCCGAAATCTTCTAGTATCTTGAATTCTCTAATCATTACTAATAACATTCACCCGATTCTGTATGTGCGTATGTATGTAGCGCACTTTTTCACCCATTCAAAGTCAACCGATCAAGCTGAAACCTGGTCCGATAGATCAGAATTGTGCCTTAGTTGATGCCCGAACTTTTGGTTTTTCTAAATTTTGATATTGAAGTTTTCTGAAGACGTTCCTTGGTTTCACCACACAAAACGGTGATGGGCAGAAAGGGCGATGGTACAGGGCGACCGGAGGCCAGGAGGTTCAGCCCCGAAGGGGCGTAAACCGACTGGAAGTTTGAAAATTAGGAATTCTGAAATTCCACGTTTCCTCGAAACCTTCCAGATTCCTCTAGAATCTTAAAATCCAATTTTTTGGGTTTCTAAAT</canonical>
            <polymorphic>CTTCTATTTTTCCCACTTTTTCTTATCAATTTTGTCAGAGCAGGAGCACCTACGTGCTCCTGCTCTCAAGAATTTTTTTCATGTCGGAATAAAAACATTTAGGTCTGGAAAATGGTTTATTGCGATTCCTTTTGTGTTAGATCCTGGAAAAGCCGAAAATATATGAAAATCAAATTTTCCAAAGCTATGTTTTTGACTTATCTGGCAAATTCTAATATTTTCACTTTTTTTTTTAATTTTCAGAACTTTCGACTTTCCTACAGATCCTCCGAACTTTCGAGGAATTCGGGATTTTCTATTTTCTAGAATTTTTTCGGATTTTCTGAGTAATCGACTTTGAATTTCTAGGATTCGAAAAAGTTTCTTTTCAAGGTTTCAAGGTTTTGGAATCTCTAACTTTTAGAAACTAAAAAAAGAATCATCCCAATTTTTGGTTTTTCGGTTTTCAATTTTTTTTCAATTCTGAAAACATTCTGACATTCTGGAATTTCGGAAAAACWAGAGTTTCAAAATCCCAATTTCCACAGTCCCAGATTCAAAATTTTCAAATTTCGAAATTTCAGACAATTTTCCAATGATCGAATTCTGAAACTTCCGAAATCTTCTAGTATCTTGAATTCTCTAATCATTACTAATAACATTCACCCGATTCTGTATGTGCGTATGTATGTAGCGCACTTTTTCACCCATTCAAAGTCAACCGATCAAGCTGAAACCTGGTCCGATAGATCAGAATTGTGCCTTAGTTGATGCCCGAACTTTTGGTTTTTCTAAATTTTGATATTGAAGTTTTCTGAAGACGTTCCTTGGTTTCACCACACAAAACGGTGATGGGCAGAAAGGGCGATGGTACAGGGCGACCGGAGGCCAGGAGGTTCAGCCCCGAAGGGGCGTAAACCGACTGGAAGTTTGAAAATTAGGAATTCTGAAATTCCACGTTTCCTCGAAACCTTCCAGATTCCTCTAGAATCTTAAAATCCAATTTTTTGGGTTTCTAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>359 303 154 106 42 36</canonical_bands>
                <polymorphic_bands>359 303 260 42 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGTTTTGGAATCTCTAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>TAGAGGAATCTGGAAGGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>588</pcr_amplicon_size>
		<canonical_amplicon>AGGTTTTGGAATCTCTAACTTTTAGAAACTAAAAAAAGAATCATCCCAATTTTTGGTTTTTCGGTTTTCAATTTTTTTTCAATTCTGAAAACATTCTGACATTCTGGAATTTCGGAAAAACTAGAGTTTCAAAATCCCAATTTCCACAGTCCCAGATTCAAAATTTTCAAATTTCGAAATTTCAGACAATTTTCCAATGATCGAATTCTGAAACTTCCGAAATCTTCTAGTATCTTGAATTCTCTAATCATTACTAATAACATTCACCCGATTCTGTATGTGCGTATGTATGTAGCGCACTTTTTCACCCATTCAAAGTCAACCGATCAAGCTGAAACCTGGTCCGATAGATCAGAATTGTGCCTTAGTTGATGCCCGAACTTTTGGTTTTTCTAAATTTTGATATTGAAGTTTTCTGAAGACGTTCCTTGGTTTCACCACACAAAACGGTGATGGGCAGAAAGGGCGATGGTACAGGGCGACCGGAGGCCAGGAGGTTCAGCCCCGAAGGGGCGTAAACCGACTGGAAGTTTGAAAATTAGGAATTCTGAAATTCCACGTTTCCTCGAAACCTTCCAGATTCCTCTA</canonical_amplicon>
		<polymorphic_amplicon>AGGTTTTGGAATCTCTAACTTTTAGAAACTAAAAAAAGAATCATCCCAATTTTTGGTTTTTCGGTTTTCAATTTTTTTTCAATTCTGAAAACATTCTGACATTCTGGAATTTCGGAAAAACWAGAGTTTCAAAATCCCAATTTCCACAGTCCCAGATTCAAAATTTTCAAATTTCGAAATTTCAGACAATTTTCCAATGATCGAATTCTGAAACTTCCGAAATCTTCTAGTATCTTGAATTCTCTAATCATTACTAATAACATTCACCCGATTCTGTATGTGCGTATGTATGTAGCGCACTTTTTCACCCATTCAAAGTCAACCGATCAAGCTGAAACCTGGTCCGATAGATCAGAATTGTGCCTTAGTTGATGCCCGAACTTTTGGTTTTTCTAAATTTTGATATTGAAGTTTTCTGAAGACGTTCCTTGGTTTCACCACACAAAACGGTGATGGGCAGAAAGGGCGATGGTACAGGGCGACCGGAGGCCAGGAGGTTCAGCCCCGAAGGGGCGTAAACCGACTGGAAGTTTGAAAATTAGGAATTCTGAAATTCCACGTTTCCTCGAAACCTTCCAGATTCCTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24491</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>169278</contig_pos>
        <strand></strand>
        <context>attttccaat[G/T]atcgaattct</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTCCCAGATTCAAAATTTTCAAATTTCGAAATTTCAGACAATTTTCCAAT</left_flank>
        <right_flank>ATCGAATTCTGAAACTTCCGAAATCTTCTAGTATCTTGAATTCTCTAATC</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCATGTCGGAATAAAAACATTTAGGTCTGGAAAATGGTTTATTGCGATTCCTTTTGTGTTAGATCCTGGAAAAGCCGAAAATATATGAAAATCAAATTTTCCAAAGCTATGTTTTTGACTTATCTGGCAAATTCTAATATTTTCACTTTTTTTTTTAATTTTCAGAACTTTCGACTTTCCTACAGATCCTCCGAACTTTCGAGGAATTCGGGATTTTCTATTTTCTAGAATTTTTTCGGATTTTCTGAGTAATCGACTTTGAATTTCTAGGATTCGAAAAAGTTTCTTTTCAAGGTTTCAAGGTTTTGGAATCTCTAACTTTTAGAAACTAAAAAAAGAATCATCCCAATTTTTGGTTTTTCGGTTTTCAATTTTTTTTCAATTCTGAAAACATTCTGACATTCTGGAATTTCGGAAAAACTAGAGTTTCAAAATCCCAATTTCCACAGTCCCAGATTCAAAATTTTCAAATTTCGAAATTTCAGACAATTTTCCAATGATCGAATTCTGAAACTTCCGAAATCTTCTAGTATCTTGAATTCTCTAATCATTACTAATAACATTCACCCGATTCTGTATGTGCGTATGTATGTAGCGCACTTTTTCACCCATTCAAAGTCAACCGATCAAGCTGAAACCTGGTCCGATAGATCAGAATTGTGCCTTAGTTGATGCCCGAACTTTTGGTTTTTCTAAATTTTGATATTGAAGTTTTCTGAAGACGTTCCTTGGTTTCACCACACAAAACGGTGATGGGCAGAAAGGGCGATGGTACAGGGCGACCGGAGGCCAGGAGGTTCAGCCCCGAAGGGGCGTAAACCGACTGGAAGTTTGAAAATTAGGAATTCTGAAATTCCACGTTTCCTCGAAACCTTCCAGATTCCTCTAGAATCTTAAAATCCAATTTTTTGGGTTTCTAAATTTTTACTTCTAAAATGTTTGGGAAAGTTTGCAATTTTTGAACATTGTCAGTTCTCTGATTTCCCTGGATCGGGGTTT</canonical>
            <polymorphic>TTCATGTCGGAATAAAAACATTTAGGTCTGGAAAATGGTTTATTGCGATTCCTTTTGTGTTAGATCCTGGAAAAGCCGAAAATATATGAAAATCAAATTTTCCAAAGCTATGTTTTTGACTTATCTGGCAAATTCTAATATTTTCACTTTTTTTTTTAATTTTCAGAACTTTCGACTTTCCTACAGATCCTCCGAACTTTCGAGGAATTCGGGATTTTCTATTTTCTAGAATTTTTTCGGATTTTCTGAGTAATCGACTTTGAATTTCTAGGATTCGAAAAAGTTTCTTTTCAAGGTTTCAAGGTTTTGGAATCTCTAACTTTTAGAAACTAAAAAAAGAATCATCCCAATTTTTGGTTTTTCGGTTTTCAATTTTTTTTCAATTCTGAAAACATTCTGACATTCTGGAATTTCGGAAAAACTAGAGTTTCAAAATCCCAATTTCCACAGTCCCAGATTCAAAATTTTCAAATTTCGAAATTTCAGACAATTTTCCAATKATCGAATTCTGAAACTTCCGAAATCTTCTAGTATCTTGAATTCTCTAATCATTACTAATAACATTCACCCGATTCTGTATGTGCGTATGTATGTAGCGCACTTTTTCACCCATTCAAAGTCAACCGATCAAGCTGAAACCTGGTCCGATAGATCAGAATTGTGCCTTAGTTGATGCCCGAACTTTTGGTTTTTCTAAATTTTGATATTGAAGTTTTCTGAAGACGTTCCTTGGTTTCACCACACAAAACGGTGATGGGCAGAAAGGGCGATGGTACAGGGCGACCGGAGGCCAGGAGGTTCAGCCCCGAAGGGGCGTAAACCGACTGGAAGTTTGAAAATTAGGAATTCTGAAATTCCACGTTTCCTCGAAACCTTCCAGATTCCTCTAGAATCTTAAAATCCAATTTTTTGGGTTTCTAAATTTTTACTTCTAAAATGTTTGGGAAAGTTTGCAATTTTTGAACATTGTCAGTTCTCTGATTTCCCTGGATCGGGGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>339 314 126 123 62 25 11</canonical_bands>
                <polymorphic_bands>440 339 123 62 25 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGTTTTGGAATCTCTAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>TAGAGGAATCTGGAAGGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>588</pcr_amplicon_size>
		<canonical_amplicon>AGGTTTTGGAATCTCTAACTTTTAGAAACTAAAAAAAGAATCATCCCAATTTTTGGTTTTTCGGTTTTCAATTTTTTTTCAATTCTGAAAACATTCTGACATTCTGGAATTTCGGAAAAACTAGAGTTTCAAAATCCCAATTTCCACAGTCCCAGATTCAAAATTTTCAAATTTCGAAATTTCAGACAATTTTCCAATGATCGAATTCTGAAACTTCCGAAATCTTCTAGTATCTTGAATTCTCTAATCATTACTAATAACATTCACCCGATTCTGTATGTGCGTATGTATGTAGCGCACTTTTTCACCCATTCAAAGTCAACCGATCAAGCTGAAACCTGGTCCGATAGATCAGAATTGTGCCTTAGTTGATGCCCGAACTTTTGGTTTTTCTAAATTTTGATATTGAAGTTTTCTGAAGACGTTCCTTGGTTTCACCACACAAAACGGTGATGGGCAGAAAGGGCGATGGTACAGGGCGACCGGAGGCCAGGAGGTTCAGCCCCGAAGGGGCGTAAACCGACTGGAAGTTTGAAAATTAGGAATTCTGAAATTCCACGTTTCCTCGAAACCTTCCAGATTCCTCTA</canonical_amplicon>
		<polymorphic_amplicon>AGGTTTTGGAATCTCTAACTTTTAGAAACTAAAAAAAGAATCATCCCAATTTTTGGTTTTTCGGTTTTCAATTTTTTTTCAATTCTGAAAACATTCTGACATTCTGGAATTTCGGAAAAACTAGAGTTTCAAAATCCCAATTTCCACAGTCCCAGATTCAAAATTTTCAAATTTCGAAATTTCAGACAATTTTCCAATKATCGAATTCTGAAACTTCCGAAATCTTCTAGTATCTTGAATTCTCTAATCATTACTAATAACATTCACCCGATTCTGTATGTGCGTATGTATGTAGCGCACTTTTTCACCCATTCAAAGTCAACCGATCAAGCTGAAACCTGGTCCGATAGATCAGAATTGTGCCTTAGTTGATGCCCGAACTTTTGGTTTTTCTAAATTTTGATATTGAAGTTTTCTGAAGACGTTCCTTGGTTTCACCACACAAAACGGTGATGGGCAGAAAGGGCGATGGTACAGGGCGACCGGAGGCCAGGAGGTTCAGCCCCGAAGGGGCGTAAACCGACTGGAAGTTTGAAAATTAGGAATTCTGAAATTCCACGTTTCCTCGAAACCTTCCAGATTCCTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24492</snp_id>
        <super_contig>c000800863.Contig2</super_contig>
        <contig_pos>169310</contig_pos>
        <strand>+</strand>
        <context>aatCTTCTAG[A/T]ATCTTGAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCAGACAATTTTCCAATGATCGAATTCTGAAACTTCCGAAATCTTCTAG</left_flank>
        <right_flank>ATCTTGAATTCTCTAATCATTACTAATAACATTCACCCGATTCTGTATGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGGTTTATTGCGATTCCTTTTGTGTTAGATCCTGGAAAAGCCGAAAATATATGAAAATCAAATTTTCCAAAGCTATGTTTTTGACTTATCTGGCAAATTCTAATATTTTCACTTTTTTTTTTAATTTTCAGAACTTTCGACTTTCCTACAGATCCTCCGAACTTTCGAGGAATTCGGGATTTTCTATTTTCTAGAATTTTTTCGGATTTTCTGAGTAATCGACTTTGAATTTCTAGGATTCGAAAAAGTTTCTTTTCAAGGTTTCAAGGTTTTGGAATCTCTAACTTTTAGAAACTAAAAAAAGAATCATCCCAATTTTTGGTTTTTCGGTTTTCAATTTTTTTTCAATTCTGAAAACATTCTGACATTCTGGAATTTCGGAAAAACTAGAGTTTCAAAATCCCAATTTCCACAGTCCCAGATTCAAAATTTTCAAATTTCGAAATTTCAGACAATTTTCCAATGATCGAATTCTGAAACTTCCGAAATCTTCTAGTATCTTGAATTCTCTAATCATTACTAATAACATTCACCCGATTCTGTATGTGCGTATGTATGTAGCGCACTTTTTCACCCATTCAAAGTCAACCGATCAAGCTGAAACCTGGTCCGATAGATCAGAATTGTGCCTTAGTTGATGCCCGAACTTTTGGTTTTTCTAAATTTTGATATTGAAGTTTTCTGAAGACGTTCCTTGGTTTCACCACACAAAACGGTGATGGGCAGAAAGGGCGATGGTACAGGGCGACCGGAGGCCAGGAGGTTCAGCCCCGAAGGGGCGTAAACCGACTGGAAGTTTGAAAATTAGGAATTCTGAAATTCCACGTTTCCTCGAAACCTTCCAGATTCCTCTAGAATCTTAAAATCCAATTTTTTGGGTTTCTAAATTTTTACTTCTAAAATGTTTGGGAAAGTTTGCAATTTTTGAACATTGTCAGTTCTCTGATTTCCCTGGATCGGGGTTTTCAGATTTTCAGATTTTCCTATCCTAAATTTT</canonical>
            <polymorphic>AAATGGTTTATTGCGATTCCTTTTGTGTTAGATCCTGGAAAAGCCGAAAATATATGAAAATCAAATTTTCCAAAGCTATGTTTTTGACTTATCTGGCAAATTCTAATATTTTCACTTTTTTTTTTAATTTTCAGAACTTTCGACTTTCCTACAGATCCTCCGAACTTTCGAGGAATTCGGGATTTTCTATTTTCTAGAATTTTTTCGGATTTTCTGAGTAATCGACTTTGAATTTCTAGGATTCGAAAAAGTTTCTTTTCAAGGTTTCAAGGTTTTGGAATCTCTAACTTTTAGAAACTAAAAAAAGAATCATCCCAATTTTTGGTTTTTCGGTTTTCAATTTTTTTTCAATTCTGAAAACATTCTGACATTCTGGAATTTCGGAAAAACTAGAGTTTCAAAATCCCAATTTCCACAGTCCCAGATTCAAAATTTTCAAATTTCGAAATTTCAGACAATTTTCCAATGATCGAATTCTGAAACTTCCGAAATCTTCTAGWATCTTGAATTCTCTAATCATTACTAATAACATTCACCCGATTCTGTATGTGCGTATGTATGTAGCGCACTTTTTCACCCATTCAAAGTCAACCGATCAAGCTGAAACCTGGTCCGATAGATCAGAATTGTGCCTTAGTTGATGCCCGAACTTTTGGTTTTTCTAAATTTTGATATTGAAGTTTTCTGAAGACGTTCCTTGGTTTCACCACACAAAACGGTGATGGGCAGAAAGGGCGATGGTACAGGGCGACCGGAGGCCAGGAGGTTCAGCCCCGAAGGGGCGTAAACCGACTGGAAGTTTGAAAATTAGGAATTCTGAAATTCCACGTTTCCTCGAAACCTTCCAGATTCCTCTAGAATCTTAAAATCCAATTTTTTGGGTTTCTAAATTTTTACTTCTAAAATGTTTGGGAAAGTTTGCAATTTTTGAACATTGTCAGTTCTCTGATTTCCCTGGATCGGGGTTTTCAGATTTTCAGATTTTCCTATCCTAAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGTTTTGGAATCTCTAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>TAGAGGAATCTGGAAGGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>588</pcr_amplicon_size>
		<canonical_amplicon>AGGTTTTGGAATCTCTAACTTTTAGAAACTAAAAAAAGAATCATCCCAATTTTTGGTTTTTCGGTTTTCAATTTTTTTTCAATTCTGAAAACATTCTGACATTCTGGAATTTCGGAAAAACTAGAGTTTCAAAATCCCAATTTCCACAGTCCCAGATTCAAAATTTTCAAATTTCGAAATTTCAGACAATTTTCCAATGATCGAATTCTGAAACTTCCGAAATCTTCTAGTATCTTGAATTCTCTAATCATTACTAATAACATTCACCCGATTCTGTATGTGCGTATGTATGTAGCGCACTTTTTCACCCATTCAAAGTCAACCGATCAAGCTGAAACCTGGTCCGATAGATCAGAATTGTGCCTTAGTTGATGCCCGAACTTTTGGTTTTTCTAAATTTTGATATTGAAGTTTTCTGAAGACGTTCCTTGGTTTCACCACACAAAACGGTGATGGGCAGAAAGGGCGATGGTACAGGGCGACCGGAGGCCAGGAGGTTCAGCCCCGAAGGGGCGTAAACCGACTGGAAGTTTGAAAATTAGGAATTCTGAAATTCCACGTTTCCTCGAAACCTTCCAGATTCCTCTA</canonical_amplicon>
		<polymorphic_amplicon>AGGTTTTGGAATCTCTAACTTTTAGAAACTAAAAAAAGAATCATCCCAATTTTTGGTTTTTCGGTTTTCAATTTTTTTTCAATTCTGAAAACATTCTGACATTCTGGAATTTCGGAAAAACTAGAGTTTCAAAATCCCAATTTCCACAGTCCCAGATTCAAAATTTTCAAATTTCGAAATTTCAGACAATTTTCCAATGATCGAATTCTGAAACTTCCGAAATCTTCTAGWATCTTGAATTCTCTAATCATTACTAATAACATTCACCCGATTCTGTATGTGCGTATGTATGTAGCGCACTTTTTCACCCATTCAAAGTCAACCGATCAAGCTGAAACCTGGTCCGATAGATCAGAATTGTGCCTTAGTTGATGCCCGAACTTTTGGTTTTTCTAAATTTTGATATTGAAGTTTTCTGAAGACGTTCCTTGGTTTCACCACACAAAACGGTGATGGGCAGAAAGGGCGATGGTACAGGGCGACCGGAGGCCAGGAGGTTCAGCCCCGAAGGGGCGTAAACCGACTGGAAGTTTGAAAATTAGGAATTCTGAAATTCCACGTTTCCTCGAAACCTTCCAGATTCCTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24493</snp_id>
        <super_contig>c000800880.Contig4</super_contig>
        <contig_pos>11569</contig_pos>
        <strand>+</strand>
        <context>acggtATCTT[A/T]AAAATATGCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTT</left_flank>
        <right_flank>AAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTTTTAAACATTTTTTCAATGAAATATTTGGAGAGAAAATTTTAAAAAGAATCGGAAAAAACCAGAAAAAAATTACGATGAAATTCAAACAATTGGCATGATCTTTGTATCTAAACCAATCTTTTGTGTTTTATTGCTTCGGAAAGTTGACATTAATCGTTTGGACAGATTTTGATAAGGTTTGGTTCATGATCATTGTGTTTCTCAGTATATAAATAACCCCCACCTACCCGAAACAACCACTCCAATTGACAGAAAATAATGTCTACTGGTAAGTTTTTCCGTTTTTCAAAGTACCCGAATTGTTAAATTTGAGCCCATGTATCTCATTTTCTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTCGATTTCTTTCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACT</canonical>
            <polymorphic>GATTTTTTAAACATTTTTTCAATGAAATATTTGGAGAGAAAATTTTAAAAAGAATCGGAAAAAACCAGAAAAAAATTACGATGAAATTCAAACAATTGGCATGATCTTTGTATCTAAACCAATCTTTTGTGTTTTATTGCTTCGGAAAGTTGACATTAATCGTTTGGACAGATTTTGATAAGGTTTGGTTCATGATCATTGTGTTTCTCAGTATATAAATAACCCCCACCTACCCGAAACAACCACTCCAATTGACAGAAAATAATGTCTACTGGTAAGTTTTTCCGTTTTTCAAAGTACCCGAATTGTTAAATTTGAGCCCATGTATCTCATTTTCTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTCGATTTCTTTCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTWAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 454 38 8</canonical_bands>
                <polymorphic_bands>954 38 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>470 153 139 111 51 38 31 7</canonical_bands>
                <polymorphic_bands>470 170 153 111 51 38 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAGTTTTTCCGTTTTTCAAAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCCGTTTTCCAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>302</pcr_amplicon_size>
		<canonical_amplicon>TAAGTTTTTCCGTTTTTCAAAGTACCCGAATTGTTAAATTTGAGCCCATGTATCTCATTTTCTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTCGATTTCTTTCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TAAGTTTTTCCGTTTTTCAAAGTACCCGAATTGTTAAATTTGAGCCCATGTATCTCATTTTCTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTCGATTTCTTTCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTWAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24494</snp_id>
        <super_contig>c000800880.Contig4</super_contig>
        <contig_pos>11589</contig_pos>
        <strand>+</strand>
        <context>CCTCATTTTT[C/T]CAGACAACGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTT</left_flank>
        <right_flank>CAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAAC</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGAAATATTTGGAGAGAAAATTTTAAAAAGAATCGGAAAAAACCAGAAAAAAATTACGATGAAATTCAAACAATTGGCATGATCTTTGTATCTAAACCAATCTTTTGTGTTTTATTGCTTCGGAAAGTTGACATTAATCGTTTGGACAGATTTTGATAAGGTTTGGTTCATGATCATTGTGTTTCTCAGTATATAAATAACCCCCACCTACCCGAAACAACCACTCCAATTGACAGAAAATAATGTCTACTGGTAAGTTTTTCCGTTTTTCAAAGTACCCGAATTGTTAAATTTGAGCCCATGTATCTCATTTTCTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTCGATTTCTTTCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATA</canonical>
            <polymorphic>AATGAAATATTTGGAGAGAAAATTTTAAAAAGAATCGGAAAAAACCAGAAAAAAATTACGATGAAATTCAAACAATTGGCATGATCTTTGTATCTAAACCAATCTTTTGTGTTTTATTGCTTCGGAAAGTTGACATTAATCGTTTGGACAGATTTTGATAAGGTTTGGTTCATGATCATTGTGTTTCTCAGTATATAAATAACCCCCACCTACCCGAAACAACCACTCCAATTGACAGAAAATAATGTCTACTGGTAAGTTTTTCCGTTTTTCAAAGTACCCGAATTGTTAAATTTGAGCCCATGTATCTCATTTTCTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTCGATTTCTTTCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTYCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>378 329 103 87 66 37</canonical_bands>
                <polymorphic_bands>481 329 87 66 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAGTTTTTCCGTTTTTCAAAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCCGTTTTCCAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>302</pcr_amplicon_size>
		<canonical_amplicon>TAAGTTTTTCCGTTTTTCAAAGTACCCGAATTGTTAAATTTGAGCCCATGTATCTCATTTTCTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTCGATTTCTTTCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TAAGTTTTTCCGTTTTTCAAAGTACCCGAATTGTTAAATTTGAGCCCATGTATCTCATTTTCTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTCGATTTCTTTCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTYCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24495</snp_id>
        <super_contig>c000800880.Contig4</super_contig>
        <contig_pos>11601</contig_pos>
        <strand>+</strand>
        <context>AGACAACGTT[A/C]ACAAAGTCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTT</left_flank>
        <right_flank>ACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGAGAAAATTTTAAAAAGAATCGGAAAAAACCAGAAAAAAATTACGATGAAATTCAAACAATTGGCATGATCTTTGTATCTAAACCAATCTTTTGTGTTTTATTGCTTCGGAAAGTTGACATTAATCGTTTGGACAGATTTTGATAAGGTTTGGTTCATGATCATTGTGTTTCTCAGTATATAAATAACCCCCACCTACCCGAAACAACCACTCCAATTGACAGAAAATAATGTCTACTGGTAAGTTTTTCCGTTTTTCAAAGTACCCGAATTGTTAAATTTGAGCCCATGTATCTCATTTTCTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTCGATTTCTTTCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATAAAGTGCCTCCCT</canonical>
            <polymorphic>GGAGAGAAAATTTTAAAAAGAATCGGAAAAAACCAGAAAAAAATTACGATGAAATTCAAACAATTGGCATGATCTTTGTATCTAAACCAATCTTTTGTGTTTTATTGCTTCGGAAAGTTGACATTAATCGTTTGGACAGATTTTGATAAGGTTTGGTTCATGATCATTGTGTTTCTCAGTATATAAATAACCCCCACCTACCCGAAACAACCACTCCAATTGACAGAAAATAATGTCTACTGGTAAGTTTTTCCGTTTTTCAAAGTACCCGAATTGTTAAATTTGAGCCCATGTATCTCATTTTCTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTCGATTTCTTTCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTMACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATAAAGTGCCTCCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTTAAC</site>
                <isoschizomers>
                    <enzyme>BstHPI</enzyme>
                    <enzyme>HpaI</enzyme>
                    <enzyme>KspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 329 170</canonical_bands>
                <polymorphic_bands>671 329</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>501 210 125 119 45</canonical_bands>
                <polymorphic_bands>626 210 119 45</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 153 139 111 51 31 13</canonical_bands>
                <polymorphic_bands>533 153 139 111 51 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTTTTCCGTTTTTCAAAGT</pcr_primer_p1>
		<pcr_primer_p2>CTTCAGCGACATTTTTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>324</pcr_amplicon_size>
		<canonical_amplicon>AGTTTTTCCGTTTTTCAAAGTACCCGAATTGTTAAATTTGAGCCCATGTATCTCATTTTCTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTCGATTTCTTTCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAG</canonical_amplicon>
		<polymorphic_amplicon>AGTTTTTCCGTTTTTCAAAGTACCCGAATTGTTAAATTTGAGCCCATGTATCTCATTTTCTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTCGATTTCTTTCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTMACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24496</snp_id>
        <super_contig>c000800880.Contig4</super_contig>
        <contig_pos>11649</contig_pos>
        <strand>+</strand>
        <context>CGGAAAATTC[A/G]TATTCAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTC</left_flank>
        <right_flank>TATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAAATTCAAACAATTGGCATGATCTTTGTATCTAAACCAATCTTTTGTGTTTTATTGCTTCGGAAAGTTGACATTAATCGTTTGGACAGATTTTGATAAGGTTTGGTTCATGATCATTGTGTTTCTCAGTATATAAATAACCCCCACCTACCCGAAACAACCACTCCAATTGACAGAAAATAATGTCTACTGGTAAGTTTTTCCGTTTTTCAAAGTACCCGAATTGTTAAATTTGAGCCCATGTATCTCATTTTCTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTCGATTTCTTTCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATAAAGTGCCTCCCTAACTTTGAGGCAATTTATCTCGGTTCCTGTAACAAAAACCAAAAAGTG</canonical>
            <polymorphic>ATGAAATTCAAACAATTGGCATGATCTTTGTATCTAAACCAATCTTTTGTGTTTTATTGCTTCGGAAAGTTGACATTAATCGTTTGGACAGATTTTGATAAGGTTTGGTTCATGATCATTGTGTTTCTCAGTATATAAATAACCCCCACCTACCCGAAACAACCACTCCAATTGACAGAAAATAATGTCTACTGGTAAGTTTTTCCGTTTTTCAAAGTACCCGAATTGTTAAATTTGAGCCCATGTATCTCATTTTCTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTCGATTTCTTTCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCRTATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATAAAGTGCCTCCCTAACTTTGAGGCAATTTATCTCGGTTCCTGTAACAAAAACCAAAAAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGTTTTTCCGTTTTTCAAAG</pcr_primer_p1>
		<pcr_primer_p2>TGAGTAATCCTCCGACTCCT</pcr_primer_p2>
		<pcr_amplicon_size>362</pcr_amplicon_size>
		<canonical_amplicon>TAAGTTTTTCCGTTTTTCAAAGTACCCGAATTGTTAAATTTGAGCCCATGTATCTCATTTTCTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTCGATTTCTTTCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCA</canonical_amplicon>
		<polymorphic_amplicon>TAAGTTTTTCCGTTTTTCAAAGTACCCGAATTGTTAAATTTGAGCCCATGTATCTCATTTTCTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTCGATTTCTTTCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCRTATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24497</snp_id>
        <super_contig>c000800880.Contig4</super_contig>
        <contig_pos>11771</contig_pos>
        <strand>+</strand>
        <context>ACGATTTGGA[A/G]AAGAAAATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGA</left_flank>
        <right_flank>AAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATC</right_flank>
        <qual_score>149</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTCTCAGTATATAAATAACCCCCACCTACCCGAAACAACCACTCCAATTGACAGAAAATAATGTCTACTGGTAAGTTTTTCCGTTTTTCAAAGTACCCGAATTGTTAAATTTGAGCCCATGTATCTCATTTTCTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTCGATTTCTTTCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATAAAGTGCCTCCCTAACTTTGAGGCAATTTATCTCGGTTCCTGTAACAAAAACCAAAAAGTGGTCAACTAGTAAAATACTGTTGATATTATGATAAACATTTAATCAGTTGGCCACTTTTCGATATATTTCACAGGAAATGAGATACATGGGCTCAAAGTTGATAGTCCTATAAAAATGGCTAA</canonical>
            <polymorphic>GTTTCTCAGTATATAAATAACCCCCACCTACCCGAAACAACCACTCCAATTGACAGAAAATAATGTCTACTGGTAAGTTTTTCCGTTTTTCAAAGTACCCGAATTGTTAAATTTGAGCCCATGTATCTCATTTTCTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTCGATTTCTTTCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGARAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATAAAGTGCCTCCCTAACTTTGAGGCAATTTATCTCGGTTCCTGTAACAAAAACCAAAAAGTGGTCAACTAGTAAAATACTGTTGATATTATGATAAACATTTAATCAGTTGGCCACTTTTCGATATATTTCACAGGAAATGAGATACATGGGCTCAAAGTTGATAGTCCTATAAAAATGGCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTCAAAAATGTCGCTGAAG</pcr_primer_p1>
		<pcr_primer_p2>GTTCTGGAGGATTTTTCTTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>181</pcr_amplicon_size>
		<canonical_amplicon>TATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAAC</canonical_amplicon>
		<polymorphic_amplicon>TATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGARAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24498</snp_id>
        <super_contig>c000800880.Contig4</super_contig>
        <contig_pos>11785</contig_pos>
        <strand>+</strand>
        <context>AAAATTGATA[A/C]GGTAGAGCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATA</left_flank>
        <right_flank>GGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAA</right_flank>
        <qual_score>149</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATAACCCCCACCTACCCGAAACAACCACTCCAATTGACAGAAAATAATGTCTACTGGTAAGTTTTTCCGTTTTTCAAAGTACCCGAATTGTTAAATTTGAGCCCATGTATCTCATTTTCTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTCGATTTCTTTCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATAAAGTGCCTCCCTAACTTTGAGGCAATTTATCTCGGTTCCTGTAACAAAAACCAAAAAGTGGTCAACTAGTAAAATACTGTTGATATTATGATAAACATTTAATCAGTTGGCCACTTTTCGATATATTTCACAGGAAATGAGATACATGGGCTCAAAGTTGATAGTCCTATAAAAATGGCTAAAAATTCGGGGTACA</canonical>
            <polymorphic>AAATAACCCCCACCTACCCGAAACAACCACTCCAATTGACAGAAAATAATGTCTACTGGTAAGTTTTTCCGTTTTTCAAAGTACCCGAATTGTTAAATTTGAGCCCATGTATCTCATTTTCTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTCGATTTCTTTCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATAMGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATAAAGTGCCTCCCTAACTTTGAGGCAATTTATCTCGGTTCCTGTAACAAAAACCAAAAAGTGGTCAACTAGTAAAATACTGTTGATATTATGATAAACATTTAATCAGTTGGCCACTTTTCGATATATTTCACAGGAAATGAGATACATGGGCTCAAAGTTGATAGTCCTATAAAAATGGCTAAAAATTCGGGGTACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>276 225 192 118 91 89 9</canonical_bands>
                <polymorphic_bands>417 276 118 91 89 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTTGCACCTGAAGAGAAG</pcr_primer_p1>
		<pcr_primer_p2>CCCTTTAAAGTTTTAGCATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>933</pcr_amplicon_size>
		<canonical_amplicon>CTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATAMGGTAGAGCTTGTTTTATAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24499</snp_id>
        <super_contig>c000800880.Contig4</super_contig>
        <contig_pos>11860</contig_pos>
        <strand></strand>
        <context>tagctgttct[G/A]ggmgmcgaga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCT</left_flank>
        <right_flank>GGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAGTACCCGAATTGTTAAATTTGAGCCCATGTATCTCATTTTCTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTCGATTTCTTTCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATAAAGTGCCTCCCTAACTTTGAGGCAATTTATCTCGGTTCCTGTAACAAAAACCAAAAAGTGGTCAACTAGTAAAATACTGTTGATATTATGATAAACATTTAATCAGTTGGCCACTTTTCGATATATTTCACAGGAAATGAGATACATGGGCTCAAAGTTGATAGTCCTATAAAAATGGCTAAAAATTCGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAAATTCGGGGGTACAACGATTCGGGGGTACAAACTATCAATGATTCT</canonical>
            <polymorphic>TCAAAGTACCCGAATTGTTAAATTTGAGCCCATGTATCTCATTTTCTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTCGATTTCTTTCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTRGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATAAAGTGCCTCCCTAACTTTGAGGCAATTTATCTCGGTTCCTGTAACAAAAACCAAAAAGTGGTCAACTAGTAAAATACTGTTGATATTATGATAAACATTTAATCAGTTGGCCACTTTTCGATATATTTCACAGGAAATGAGATACATGGGCTCAAAGTTGATAGTCCTATAAAAATGGCTAAAAATTCGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAAATTCGGGGGTACAACGATTCGGGGGTACAAACTATCAATGATTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGAAGAAAAATCCTCCAGAAC</pcr_primer_p1>
		<pcr_primer_p2>CTTTAAAGTTTTAGCATTTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>842</pcr_amplicon_size>
		<canonical_amplicon>ATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGA</canonical_amplicon>
		<polymorphic_amplicon>ATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTRGGAGCCGAGATACGGCTATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24500</snp_id>
        <super_contig>c000800880.Contig4</super_contig>
        <contig_pos>11863</contig_pos>
        <strand></strand>
        <context>ctgttctrgg[A/C]gmcgagatac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGG</left_flank>
        <right_flank>GCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCT</right_flank>
        <qual_score>46</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTACCCGAATTGTTAAATTTGAGCCCATGTATCTCATTTTCTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTCGATTTCTTTCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATAAAGTGCCTCCCTAACTTTGAGGCAATTTATCTCGGTTCCTGTAACAAAAACCAAAAAGTGGTCAACTAGTAAAATACTGTTGATATTATGATAAACATTTAATCAGTTGGCCACTTTTCGATATATTTCACAGGAAATGAGATACATGGGCTCAAAGTTGATAGTCCTATAAAAATGGCTAAAAATTCGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAAATTCGGGGGTACAACGATTCGGGGGTACAAACTATCAATGATTCTAGG</canonical>
            <polymorphic>AAGTACCCGAATTGTTAAATTTGAGCCCATGTATCTCATTTTCTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTCGATTTCTTTCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGMGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATAAAGTGCCTCCCTAACTTTGAGGCAATTTATCTCGGTTCCTGTAACAAAAACCAAAAAGTGGTCAACTAGTAAAATACTGTTGATATTATGATAAACATTTAATCAGTTGGCCACTTTTCGATATATTTCACAGGAAATGAGATACATGGGCTCAAAGTTGATAGTCCTATAAAAATGGCTAAAAATTCGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAAATTCGGGGGTACAACGATTCGGGGGTACAAACTATCAATGATTCTAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>192 163 144 129 96 74 60 40 28 25 17 12 11 9</canonical_bands>
                <polymorphic_bands>192 163 144 129 96 74 60 40 28 25 23 17 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAATCCTCCAGAACACA</pcr_primer_p1>
		<pcr_primer_p2>CCCTTTAAAGTTTTAGCATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>838</pcr_amplicon_size>
		<canonical_amplicon>GAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGMGCCGAGATACGGCTATTTGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24501</snp_id>
        <super_contig>c000800880.Contig4</super_contig>
        <contig_pos>11865</contig_pos>
        <strand></strand>
        <context>gttctrggmg[C/A]cgagatacgg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAG</left_flank>
        <right_flank>CGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGC</right_flank>
        <qual_score>47</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTACCCGAATTGTTAAATTTGAGCCCATGTATCTCATTTTCTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTCGATTTCTTTCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATAAAGTGCCTCCCTAACTTTGAGGCAATTTATCTCGGTTCCTGTAACAAAAACCAAAAAGTGGTCAACTAGTAAAATACTGTTGATATTATGATAAACATTTAATCAGTTGGCCACTTTTCGATATATTTCACAGGAAATGAGATACATGGGCTCAAAGTTGATAGTCCTATAAAAATGGCTAAAAATTCGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAAATTCGGGGGTACAACGATTCGGGGGTACAAACTATCAATGATTCTAGGGT</canonical>
            <polymorphic>GTACCCGAATTGTTAAATTTGAGCCCATGTATCTCATTTTCTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTCGATTTCTTTCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGMCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATAAAGTGCCTCCCTAACTTTGAGGCAATTTATCTCGGTTCCTGTAACAAAAACCAAAAAGTGGTCAACTAGTAAAATACTGTTGATATTATGATAAACATTTAATCAGTTGGCCACTTTTCGATATATTTCACAGGAAATGAGATACATGGGCTCAAAGTTGATAGTCCTATAAAAATGGCTAAAAATTCGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAAATTCGGGGGTACAACGATTCGGGGGTACAAACTATCAATGATTCTAGGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>256 219 175 126 124 100</canonical_bands>
                <polymorphic_bands>299 256 219 126 100</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>375 262 240 123</canonical_bands>
                <polymorphic_bands>385 375 240</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>192 163 144 129 98 74 60 40 28 23 17 12 11 9</canonical_bands>
                <polymorphic_bands>192 163 144 129 98 74 60 40 28 23 23 17 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAATCCTCCAGAACACA</pcr_primer_p1>
		<pcr_primer_p2>CCCTTTAAAGTTTTAGCATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>838</pcr_amplicon_size>
		<canonical_amplicon>GAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTT</canonical_amplicon>
		<polymorphic_amplicon>GAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGMCGAGATACGGCTATTTGAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24502</snp_id>
        <super_contig>c000800880.Contig4</super_contig>
        <contig_pos>11951</contig_pos>
        <strand></strand>
        <context>tccgctcccg[T/A]aacwgctaga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCG</left_flank>
        <right_flank>AACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCG</right_flank>
        <qual_score>49</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCATGATAAACATTTTATCAGTTGACAACTTTTCGATTTCTTTCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATAAAGTGCCTCCCTAACTTTGAGGCAATTTATCTCGGTTCCTGTAACAAAAACCAAAAAGTGGTCAACTAGTAAAATACTGTTGATATTATGATAAACATTTAATCAGTTGGCCACTTTTCGATATATTTCACAGGAAATGAGATACATGGGCTCAAAGTTGATAGTCCTATAAAAATGGCTAAAAATTCGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAAATTCGGGGGTACAACGATTCGGGGGTACAAACTATCAATGATTCTAGGGTACAACTAATTTCATGTAGGGGTACAACGTTTGTGATTCGGAGGTACAATTTTTCTGACGAAGTTTCTGAATTCCTGAATTTCAGAG</canonical>
            <polymorphic>ATCATGATAAACATTTTATCAGTTGACAACTTTTCGATTTCTTTCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGWAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATAAAGTGCCTCCCTAACTTTGAGGCAATTTATCTCGGTTCCTGTAACAAAAACCAAAAAGTGGTCAACTAGTAAAATACTGTTGATATTATGATAAACATTTAATCAGTTGGCCACTTTTCGATATATTTCACAGGAAATGAGATACATGGGCTCAAAGTTGATAGTCCTATAAAAATGGCTAAAAATTCGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAAATTCGGGGGTACAACGATTCGGGGGTACAAACTATCAATGATTCTAGGGTACAACTAATTTCATGTAGGGGTACAACGTTTGTGATTCGGAGGTACAATTTTTCTGACGAAGTTTCTGAATTCCTGAATTTCAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>498 322 180</canonical_bands>
                <polymorphic_bands>678 322</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAATCCTCCAGAACACA</pcr_primer_p1>
		<pcr_primer_p2>CCCTTTAAAGTTTTAGCATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>838</pcr_amplicon_size>
		<canonical_amplicon>GAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGWAACTGCTAGAAAGATGGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24503</snp_id>
        <super_contig>c000800880.Contig4</super_contig>
        <contig_pos>11955</contig_pos>
        <strand></strand>
        <context>ctcccgwaac[T/A]gctagaaaga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAAC</left_flank>
        <right_flank>GCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTT</right_flank>
        <qual_score>49</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATAAACATTTTATCAGTTGACAACTTTTCGATTTCTTTCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATAAAGTGCCTCCCTAACTTTGAGGCAATTTATCTCGGTTCCTGTAACAAAAACCAAAAAGTGGTCAACTAGTAAAATACTGTTGATATTATGATAAACATTTAATCAGTTGGCCACTTTTCGATATATTTCACAGGAAATGAGATACATGGGCTCAAAGTTGATAGTCCTATAAAAATGGCTAAAAATTCGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAAATTCGGGGGTACAACGATTCGGGGGTACAAACTATCAATGATTCTAGGGTACAACTAATTTCATGTAGGGGTACAACGTTTGTGATTCGGAGGTACAATTTTTCTGACGAAGTTTCTGAATTCCTGAATTTCAGAGCTTG</canonical>
            <polymorphic>TGATAAACATTTTATCAGTTGACAACTTTTCGATTTCTTTCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACWGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATAAAGTGCCTCCCTAACTTTGAGGCAATTTATCTCGGTTCCTGTAACAAAAACCAAAAAGTGGTCAACTAGTAAAATACTGTTGATATTATGATAAACATTTAATCAGTTGGCCACTTTTCGATATATTTCACAGGAAATGAGATACATGGGCTCAAAGTTGATAGTCCTATAAAAATGGCTAAAAATTCGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAAATTCGGGGGTACAACGATTCGGGGGTACAAACTATCAATGATTCTAGGGTACAACTAATTTCATGTAGGGGTACAACGTTTGTGATTCGGAGGTACAATTTTTCTGACGAAGTTTCTGAATTCCTGAATTTCAGAGCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAATCCTCCAGAACACA</pcr_primer_p1>
		<pcr_primer_p2>CCCTTTAAAGTTTTAGCATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>838</pcr_amplicon_size>
		<canonical_amplicon>GAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAAC</canonical_amplicon>
		<polymorphic_amplicon>GAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACWGCTAGAAAGATGGTTTTTGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24504</snp_id>
        <super_contig>c000800880.Contig4</super_contig>
        <contig_pos>11979</contig_pos>
        <strand></strand>
        <context>tttttgaacc[G/A]ttttCTTTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACC</left_flank>
        <right_flank>TTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTTTCGATTTCTTTCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATAAAGTGCCTCCCTAACTTTGAGGCAATTTATCTCGGTTCCTGTAACAAAAACCAAAAAGTGGTCAACTAGTAAAATACTGTTGATATTATGATAAACATTTAATCAGTTGGCCACTTTTCGATATATTTCACAGGAAATGAGATACATGGGCTCAAAGTTGATAGTCCTATAAAAATGGCTAAAAATTCGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAAATTCGGGGGTACAACGATTCGGGGGTACAAACTATCAATGATTCTAGGGTACAACTAATTTCATGTAGGGGTACAACGTTTGTGATTCGGAGGTACAATTTTTCTGACGAAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATTTCAAAATTCGGAATCTGA</canonical>
            <polymorphic>ACTTTTCGATTTCTTTCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCRTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATAAAGTGCCTCCCTAACTTTGAGGCAATTTATCTCGGTTCCTGTAACAAAAACCAAAAAGTGGTCAACTAGTAAAATACTGTTGATATTATGATAAACATTTAATCAGTTGGCCACTTTTCGATATATTTCACAGGAAATGAGATACATGGGCTCAAAGTTGATAGTCCTATAAAAATGGCTAAAAATTCGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAAATTCGGGGGTACAACGATTCGGGGGTACAAACTATCAATGATTCTAGGGTACAACTAATTTCATGTAGGGGTACAACGTTTGTGATTCGGAGGTACAATTTTTCTGACGAAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATTTCAAAATTCGGAATCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>312 225 192 91 89 82 9</canonical_bands>
                <polymorphic_bands>312 283 225 89 82 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAATCCTCCAGAACACA</pcr_primer_p1>
		<pcr_primer_p2>CCCTTTAAAGTTTTAGCATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>838</pcr_amplicon_size>
		<canonical_amplicon>GAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCG</canonical_amplicon>
		<polymorphic_amplicon>GAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCRTTTTCTTTGTATTAGTTTGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24505</snp_id>
        <super_contig>c000800880.Contig4</super_contig>
        <contig_pos>11994</contig_pos>
        <strand>+</strand>
        <context>CTTTGTATTA[A/G]TTTGTCGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTA</left_flank>
        <right_flank>TTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAAC</right_flank>
        <qual_score>145</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATAAAGTGCCTCCCTAACTTTGAGGCAATTTATCTCGGTTCCTGTAACAAAAACCAAAAAGTGGTCAACTAGTAAAATACTGTTGATATTATGATAAACATTTAATCAGTTGGCCACTTTTCGATATATTTCACAGGAAATGAGATACATGGGCTCAAAGTTGATAGTCCTATAAAAATGGCTAAAAATTCGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAAATTCGGGGGTACAACGATTCGGGGGTACAAACTATCAATGATTCTAGGGTACAACTAATTTCATGTAGGGGTACAACGTTTGTGATTCGGAGGTACAATTTTTCTGACGAAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATTTCAAAATTCGGAATCTGAAAATTTCGGAACTTC</canonical>
            <polymorphic>TCAAGAGAAATGAGATATATAGGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTARTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATAAAGTGCCTCCCTAACTTTGAGGCAATTTATCTCGGTTCCTGTAACAAAAACCAAAAAGTGGTCAACTAGTAAAATACTGTTGATATTATGATAAACATTTAATCAGTTGGCCACTTTTCGATATATTTCACAGGAAATGAGATACATGGGCTCAAAGTTGATAGTCCTATAAAAATGGCTAAAAATTCGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAAATTCGGGGGTACAACGATTCGGGGGTACAAACTATCAATGATTCTAGGGTACAACTAATTTCATGTAGGGGTACAACGTTTGTGATTCGGAGGTACAATTTTTCTGACGAAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATTTCAAAATTCGGAATCTGAAAATTTCGGAACTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAATCCTCCAGAACACA</pcr_primer_p1>
		<pcr_primer_p2>CCCTTTAAAGTTTTAGCATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>838</pcr_amplicon_size>
		<canonical_amplicon>GAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGT</canonical_amplicon>
		<polymorphic_amplicon>GAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTARTTTGTCGATTTCAAGAAGAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24506</snp_id>
        <super_contig>c000800880.Contig4</super_contig>
        <contig_pos>12015</contig_pos>
        <strand>+</strand>
        <context>TCAAGAAGAA[A/G]TTTTTTMWGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAA</left_flank>
        <right_flank>TTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAA</right_flank>
        <qual_score>130</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATAAAGTGCCTCCCTAACTTTGAGGCAATTTATCTCGGTTCCTGTAACAAAAACCAAAAAGTGGTCAACTAGTAAAATACTGTTGATATTATGATAAACATTTAATCAGTTGGCCACTTTTCGATATATTTCACAGGAAATGAGATACATGGGCTCAAAGTTGATAGTCCTATAAAAATGGCTAAAAATTCGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAAATTCGGGGGTACAACGATTCGGGGGTACAAACTATCAATGATTCTAGGGTACAACTAATTTCATGTAGGGGTACAACGTTTGTGATTCGGAGGTACAATTTTTCTGACGAAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATTTCAAAATTCGGAATCTGAAAATTTCGGAACTTCAGAATCTGAGAATCTGAGAAT</canonical>
            <polymorphic>GGCTCAAAGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAARTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATAAAGTGCCTCCCTAACTTTGAGGCAATTTATCTCGGTTCCTGTAACAAAAACCAAAAAGTGGTCAACTAGTAAAATACTGTTGATATTATGATAAACATTTAATCAGTTGGCCACTTTTCGATATATTTCACAGGAAATGAGATACATGGGCTCAAAGTTGATAGTCCTATAAAAATGGCTAAAAATTCGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAAATTCGGGGGTACAACGATTCGGGGGTACAAACTATCAATGATTCTAGGGTACAACTAATTTCATGTAGGGGTACAACGTTTGTGATTCGGAGGTACAATTTTTCTGACGAAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATTTCAAAATTCGGAATCTGAAAATTTCGGAACTTCAGAATCTGAGAATCTGAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAATCCTCCAGAACACA</pcr_primer_p1>
		<pcr_primer_p2>CCCTTTAAAGTTTTAGCATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>838</pcr_amplicon_size>
		<canonical_amplicon>GAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAARTTTTTTCAGAATTAGTCTATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24507</snp_id>
        <super_contig>c000800880.Contig4</super_contig>
        <contig_pos>12022</contig_pos>
        <strand></strand>
        <context>GAARTTTTTT[C/A]WGAATTARRC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTT</left_flank>
        <right_flank>AGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATAAAGTGCCTCCCTAACTTTGAGGCAATTTATCTCGGTTCCTGTAACAAAAACCAAAAAGTGGTCAACTAGTAAAATACTGTTGATATTATGATAAACATTTAATCAGTTGGCCACTTTTCGATATATTTCACAGGAAATGAGATACATGGGCTCAAAGTTGATAGTCCTATAAAAATGGCTAAAAATTCGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAAATTCGGGGGTACAACGATTCGGGGGTACAAACTATCAATGATTCTAGGGTACAACTAATTTCATGTAGGGGTACAACGTTTGTGATTCGGAGGTACAATTTTTCTGACGAAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATTTCAAAATTCGGAATCTGAAAATTTCGGAACTTCAGAATCTGAGAATCTGAGAATTTCCGAA</canonical>
            <polymorphic>AGAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTMAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATAAAGTGCCTCCCTAACTTTGAGGCAATTTATCTCGGTTCCTGTAACAAAAACCAAAAAGTGGTCAACTAGTAAAATACTGTTGATATTATGATAAACATTTAATCAGTTGGCCACTTTTCGATATATTTCACAGGAAATGAGATACATGGGCTCAAAGTTGATAGTCCTATAAAAATGGCTAAAAATTCGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAAATTCGGGGGTACAACGATTCGGGGGTACAAACTATCAATGATTCTAGGGTACAACTAATTTCATGTAGGGGTACAACGTTTGTGATTCGGAGGTACAATTTTTCTGACGAAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATTTCAAAATTCGGAATCTGAAAATTTCGGAACTTCAGAATCTGAGAATCTGAGAATTTCCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>381 329 103 69 23 16 16 12 10 10 8 8 6 6 3</canonical_bands>
                <polymorphic_bands>710 103 69 23 16 16 12 10 10 8 8 6 6 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAATCCTCCAGAACACA</pcr_primer_p1>
		<pcr_primer_p2>CCCTTTAAAGTTTTAGCATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>838</pcr_amplicon_size>
		<canonical_amplicon>GAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAAC</canonical_amplicon>
		<polymorphic_amplicon>GAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTMAGAATTAGTCTATAAGCCCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24508</snp_id>
        <super_contig>c000800880.Contig4</super_contig>
        <contig_pos>12023</contig_pos>
        <strand></strand>
        <context>AARTTTTTTM[A/T]GAATTARRCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTC</left_flank>
        <right_flank>GAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATAAAGTGCCTCCCTAACTTTGAGGCAATTTATCTCGGTTCCTGTAACAAAAACCAAAAAGTGGTCAACTAGTAAAATACTGTTGATATTATGATAAACATTTAATCAGTTGGCCACTTTTCGATATATTTCACAGGAAATGAGATACATGGGCTCAAAGTTGATAGTCCTATAAAAATGGCTAAAAATTCGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAAATTCGGGGGTACAACGATTCGGGGGTACAAACTATCAATGATTCTAGGGTACAACTAATTTCATGTAGGGGTACAACGTTTGTGATTCGGAGGTACAATTTTTCTGACGAAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATTTCAAAATTCGGAATCTGAAAATTTCGGAACTTCAGAATCTGAGAATCTGAGAATTTCCGAAT</canonical>
            <polymorphic>GAAAATGGTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCWGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATAAAGTGCCTCCCTAACTTTGAGGCAATTTATCTCGGTTCCTGTAACAAAAACCAAAAAGTGGTCAACTAGTAAAATACTGTTGATATTATGATAAACATTTAATCAGTTGGCCACTTTTCGATATATTTCACAGGAAATGAGATACATGGGCTCAAAGTTGATAGTCCTATAAAAATGGCTAAAAATTCGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAAATTCGGGGGTACAACGATTCGGGGGTACAAACTATCAATGATTCTAGGGTACAACTAATTTCATGTAGGGGTACAACGTTTGTGATTCGGAGGTACAATTTTTCTGACGAAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATTTCAAAATTCGGAATCTGAAAATTTCGGAACTTCAGAATCTGAGAATCTGAGAATTTCCGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAATCCTCCAGAACACA</pcr_primer_p1>
		<pcr_primer_p2>CCCTTTAAAGTTTTAGCATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>838</pcr_amplicon_size>
		<canonical_amplicon>GAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCWGAATTAGTCTATAAGCCCAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24509</snp_id>
        <super_contig>c000800880.Contig4</super_contig>
        <contig_pos>12030</contig_pos>
        <strand></strand>
        <context>TTMWGAATTA[G/A]RCTATAAGCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTA</left_flank>
        <right_flank>TCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATAAAGTGCCTCCCTAACTTTGAGGCAATTTATCTCGGTTCCTGTAACAAAAACCAAAAAGTGGTCAACTAGTAAAATACTGTTGATATTATGATAAACATTTAATCAGTTGGCCACTTTTCGATATATTTCACAGGAAATGAGATACATGGGCTCAAAGTTGATAGTCCTATAAAAATGGCTAAAAATTCGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAAATTCGGGGGTACAACGATTCGGGGGTACAAACTATCAATGATTCTAGGGTACAACTAATTTCATGTAGGGGTACAACGTTTGTGATTCGGAGGTACAATTTTTCTGACGAAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATTTCAAAATTCGGAATCTGAAAATTTCGGAACTTCAGAATCTGAGAATCTGAGAATTTCCGAATTTTAGAA</canonical>
            <polymorphic>GTCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTARTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATAAAGTGCCTCCCTAACTTTGAGGCAATTTATCTCGGTTCCTGTAACAAAAACCAAAAAGTGGTCAACTAGTAAAATACTGTTGATATTATGATAAACATTTAATCAGTTGGCCACTTTTCGATATATTTCACAGGAAATGAGATACATGGGCTCAAAGTTGATAGTCCTATAAAAATGGCTAAAAATTCGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAAATTCGGGGGTACAACGATTCGGGGGTACAAACTATCAATGATTCTAGGGTACAACTAATTTCATGTAGGGGTACAACGTTTGTGATTCGGAGGTACAATTTTTCTGACGAAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATTTCAAAATTCGGAATCTGAAAATTTCGGAACTTCAGAATCTGAGAATCTGAGAATTTCCGAATTTTAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAATCCTCCAGAACACA</pcr_primer_p1>
		<pcr_primer_p2>CCCTTTAAAGTTTTAGCATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>838</pcr_amplicon_size>
		<canonical_amplicon>GAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTG</canonical_amplicon>
		<polymorphic_amplicon>GAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTARTCTATAAGCCCAACAAAAGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24510</snp_id>
        <super_contig>c000800880.Contig4</super_contig>
        <contig_pos>12031</contig_pos>
        <strand>+</strand>
        <context>TMWGAATTAR[A/G]CTATAAGCCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAG</left_flank>
        <right_flank>CTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATAAAGTGCCTCCCTAACTTTGAGGCAATTTATCTCGGTTCCTGTAACAAAAACCAAAAAGTGGTCAACTAGTAAAATACTGTTGATATTATGATAAACATTTAATCAGTTGGCCACTTTTCGATATATTTCACAGGAAATGAGATACATGGGCTCAAAGTTGATAGTCCTATAAAAATGGCTAAAAATTCGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAAATTCGGGGGTACAACGATTCGGGGGTACAAACTATCAATGATTCTAGGGTACAACTAATTTCATGTAGGGGTACAACGTTTGTGATTCGGAGGTACAATTTTTCTGACGAAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATTTCAAAATTCGGAATCTGAAAATTTCGGAACTTCAGAATCTGAGAATCTGAGAATTTCCGAATTTTAGAAC</canonical>
            <polymorphic>TCCGGGTGGCGTTCAAATATAGTGTATACGGTATCTTTAAAATATGCCCTCATTTTTTCAGACAACGTTAACAAAGTCATCGACCTCACCCAGGAATTCTTGGAAAACGGAAAATTCATATTCAAAAATGTCGCTGAAGCGCTGGGAGACATTGCAGGAGTCGGAGGATTACTCAAGGCTCTCATGGCTTTTGCACCTGAAGAGAAGGACCCGGTGATGGAGAAGTTGGACGATTTGGAAAAGAAAATTGATACGGTAGAGCTTGTTTTATAAAAAATAGAAGAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGRCTATAAGCCCAACAAAAGGTGCAGCTCTTCCAAATACTGTGAATACCGTACTCTTATAAAGTGCCTCCCTAACTTTGAGGCAATTTATCTCGGTTCCTGTAACAAAAACCAAAAAGTGGTCAACTAGTAAAATACTGTTGATATTATGATAAACATTTAATCAGTTGGCCACTTTTCGATATATTTCACAGGAAATGAGATACATGGGCTCAAAGTTGATAGTCCTATAAAAATGGCTAAAAATTCGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAAATTCGGGGGTACAACGATTCGGGGGTACAAACTATCAATGATTCTAGGGTACAACTAATTTCATGTAGGGGTACAACGTTTGTGATTCGGAGGTACAATTTTTCTGACGAAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATTTCAAAATTCGGAATCTGAAAATTTCGGAACTTCAGAATCTGAGAATCTGAGAATTTCCGAATTTTAGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAATCCTCCAGAACACA</pcr_primer_p1>
		<pcr_primer_p2>CCCTTTAAAGTTTTAGCATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>838</pcr_amplicon_size>
		<canonical_amplicon>GAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGTCTATAAGCCCAACAAAAGGTGC</canonical_amplicon>
		<polymorphic_amplicon>GAAAAATCCTCCAGAACACAAAAAGAACCAAGTTTCTAGCTGTTCTGGGAGCCGAGATACGGCTATTTGAAGTTTTAGAAGTTAGAGCGTCTCGTCGTCTGCGTCTCAAACTTTGACGGCATGTATCTCCGCTCCCGTAACTGCTAGAAAGATGGTTTTTGAACCGTTTTCTTTGTATTAGTTTGTCGATTTCAAGAAGAAGTTTTTTCAGAATTAGRCTATAAGCCCAACAAAAGGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24514</snp_id>
        <super_contig>c000800880.Contig4</super_contig>
        <contig_pos>28531</contig_pos>
        <strand></strand>
        <context>ATTTTAAAAA[T/C]GTGGAACTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGAATTGTGCCAACATTGGATTTTTATAGAAAGGTAACATATTTTAAAAA</left_flank>
        <right_flank>GTGGAACTTTCTGGAAATTTCGAAGATTCCAGAAATACGGAAACGCCTAT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTTTGAATATCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGATTTCCTGAATTTCTGATATTCTGAAAATCGTATTCTCTATATTCTCGTTTTTTGGACTTTTACACCACAAAGACGATCATTGTAATATTCGATAGATAACAATAAATATGTGTCAGTTGTGTCCAAAATGTTGTGTCGAATGTATTTAAAGTGTTCAACTGATAAGAGAACAATCTATAAAAAGAGGGCGAGATGAAAAACAAGTCATATCAATTAACATAATGATTCTGTTATTGTCATTTTGTCTATTACTAATTTTCTGGATTATTTCAAATTTTCGGAAAGGATCAAATTTGCCTCCCGGACCCACACCTCTTCCATTAATTGGAAATATTCATCAACTGATTTACCTGATATGGAAATTAAATGGAATTGTGCCAACATTGGATTTTTATAGAAAGGTAACATATTTTAAAAATGTGGAACTTTCTGGAAATTTCGAAGATTCCAGAAATACGGAAACGCCTATACCATTTGGCTGGGACCAATGCCCACTGTCAACATAACGGATTACGAAATGGCTCATGAGATTTTCGTTAAAAATGGGAAAAAGTGTCAGGATCGACAACTGGCGCCAGTTCTTGAGCATATTTCAGGTTGGAAATAGTAGACAAAAAATGAGCTAACGCACTAGAAATGCGTCAAGTCCCCGAAAATGCGCCTGCTAGTACTTTGACGCATTTTCAGTGTATTGAACGCAGATTAGCTGTTCCAGGGACAAAAATCTCCAGGGCGCTAGGAAAGCGTCAAGTCACGGGGAATGCGTCAAGTCACCGAAAATGCGCCTGCTTGGTTTCTTAATTTTTTCCATGTCTTGACGCATATCTAATTCCTAGACGCATTTGCCGTGTCGTGACGCATTTTTGGTGCCTTGACGCATTTCCAGTAACTTGACGTGTTTCTAGTGACTTGATTCATT</canonical>
            <polymorphic>AATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTTTGAATATCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGATTTCCTGAATTTCTGATATTCTGAAAATCGTATTCTCTATATTCTCGTTTTTTGGACTTTTACACCACAAAGACGATCATTGTAATATTCGATAGATAACAATAAATATGTGTCAGTTGTGTCCAAAATGTTGTGTCGAATGTATTTAAAGTGTTCAACTGATAAGAGAACAATCTATAAAAAGAGGGCGAGATGAAAAACAAGTCATATCAATTAACATAATGATTCTGTTATTGTCATTTTGTCTATTACTAATTTTCTGGATTATTTCAAATTTTCGGAAAGGATCAAATTTGCCTCCCGGACCCACACCTCTTCCATTAATTGGAAATATTCATCAACTGATTTACCTGATATGGAAATTAAATGGAATTGTGCCAACATTGGATTTTTATAGAAAGGTAACATATTTTAAAAAYGTGGAACTTTCTGGAAATTTCGAAGATTCCAGAAATACGGAAACGCCTATACCATTTGGCTGGGACCAATGCCCACTGTCAACATAACGGATTACGAAATGGCTCATGAGATTTTCGTTAAAAATGGGAAAAAGTGTCAGGATCGACAACTGGCGCCAGTTCTTGAGCATATTTCAGGTTGGAAATAGTAGACAAAAAATGAGCTAACGCACTAGAAATGCGTCAAGTCCCCGAAAATGCGCCTGCTAGTACTTTGACGCATTTTCAGTGTATTGAACGCAGATTAGCTGTTCCAGGGACAAAAATCTCCAGGGCGCTAGGAAAGCGTCAAGTCACGGGGAATGCGTCAAGTCACCGAAAATGCGCCTGCTTGGTTTCTTAATTTTTTCCATGTCTTGACGCATATCTAATTCCTAGACGCATTTGCCGTGTCGTGACGCATTTTTGGTGCCTTGACGCATTTCCAGTAACTTGACGTGTTTCTAGTGACTTGATTCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGGAAATTAAATGGAATTGTG</pcr_primer_p1>
		<pcr_primer_p2>AACCTGAAATATGCTCAAGAACT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TATGGAAATTAAATGGAATTGTGCCAACATTGGATTTTTATAGAAAGGTAACATATTTTAAAAATGTGGAACTTTCTGGAAATTTCGAAGATTCCAGAAATACGGAAACGCCTATACCATTTGGCTGGGACCAATGCCCACTGTCAACATAACGGATTACGAAATGGCTCATGAGATTTTCGTTAAAAATGGGAAAAAGTGTCAGGATCGACAACTGGCGCCAGTTCTTGAGCATATTTCAGGTT</canonical_amplicon>
		<polymorphic_amplicon>TATGGAAATTAAATGGAATTGTGCCAACATTGGATTTTTATAGAAAGGTAACATATTTTAAAAAYGTGGAACTTTCTGGAAATTTCGAAGATTCCAGAAATACGGAAACGCCTATACCATTTGGCTGGGACCAATGCCCACTGTCAACATAACGGATTACGAAATGGCTCATGAGATTTTCGTTAAAAATGGGAAAAAGTGTCAGGATCGACAACTGGCGCCAGTTCTTGAGCATATTTCAGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24515</snp_id>
        <super_contig>c000800880.Contig4</super_contig>
        <contig_pos>30108</contig_pos>
        <strand>+</strand>
        <context>TGGCCATCCA[A/G]GATACAYGTR</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGGCAAAAATGAGATCAGAAAATGAAAAAGGACAAGATGGCCATCCA</left_flank>
        <right_flank>GATACAAGTAAGTCTTCTACGGTACCCCAAAAAAGTTGTCAAGAATTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATGGAGAAGAAGATCATGGCTGAACTTGATGGAAGGTTGAATGGAACAAGTTTTTCCATTATTTTCAAATTTCCAGATGCTCCGAACTGGACGCTGAAATTGATAAGAATGGAAAAGTGACAGTTCCAGTCGATTTCTTCGATTTGACAGTTGGAAGTGTTATCAATAGTTTGCTGGTTGGAAAGCGATTCGATGAGAATTCAAAGGACGAATTTTTGAAAATCAAAAAAATGTTCGATGACTCATCGGAGACGTTTAACCTTTTCGATTTGAATGTGCCTGTGTGGTTTTTGAAATGGGTGCTTCCTTGGAGGTTCCGAATCACGTGGGATGCAAGACAGAATATTTTGAGTCATGTGGGAAAAGAAGCGGTTGAGAGGTTTCAAAAACTGAAAGATGGAACTTATGATCTGGATTCTGAGGAACCTAAAGATCTAGTGGATTGCTTTTTGGCAAAAATGAGATCAGAAAATGAAAAAGGACAAGATGGCCATCCAGGATACAAGTAAGTCTTCTACGGTACCCCAAAAAAGTTGTCAAGAATTTCTGAATTTCCGCGTTTCCGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATGTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAATAAAAAATCGTTTCAGAAAATCTGAAATCCAAAAATCTGGATTTTCAAAAAACGAGAAAATTGTAAAACTCAAAAAAATCTGGAATTTAAAAAATTTATTCGAATT</canonical>
            <polymorphic>TAATGGAGAAGAAGATCATGGCTGAACTTGATGGAAGGTTGAATGGAACAAGTTTTTCCATTATTTTCAAATTTCCAGATGCTCCGAACTGGACGCTGAAATTGATAAGAATGGAAAAGTGACAGTTCCAGTCGATTTCTTCGATTTGACAGTTGGAAGTGTTATCAATAGTTTGCTGGTTGGAAAGCGATTCGATGAGAATTCAAAGGACGAATTTTTGAAAATCAAAAAAATGTTCGATGACTCATCGGAGACGTTTAACCTTTTCGATTTGAATGTGCCTGTGTGGTTTTTGAAATGGGTGCTTCCTTGGAGGTTCCGAATCACGTGGGATGCAAGACAGAATATTTTGAGTCATGTGGGAAAAGAAGCGGTTGAGAGGTTTCAAAAACTGAAAGATGGAACTTATGATCTGGATTCTGAGGAACCTAAAGATCTAGTGGATTGCTTTTTGGCAAAAATGAGATCAGAAAATGAAAAAGGACAAGATGGCCATCCARGATACAAGTAAGTCTTCTACGGTACCCCAAAAAAGTTGTCAAGAATTTCTGAATTTCCGCGTTTCCGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATGTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAATAAAAAATCGTTTCAGAAAATCTGAAATCCAAAAATCTGGATTTTCAAAAAACGAGAAAATTGTAAAACTCAAAAAAATCTGGAATTTAAAAAATTTATTCGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATCTAGTGGATTGCTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>AATCGTTCATTTAATGGATCAG</pcr_primer_p2>
		<pcr_amplicon_size>591</pcr_amplicon_size>
		<canonical_amplicon>AGATCTAGTGGATTGCTTTTTGGCAAAAATGAGATCAGAAAATGAAAAAGGACAAGATGGCCATCCAGGATACAAGTAAGTCTTCTACG</canonical_amplicon>
		<polymorphic_amplicon>AGATCTAGTGGATTGCTTTTTGGCAAAAATGAGATCAGAAAATGAAAAAGGACAAGATGGCCATCCARGATACAAGTAAGTCTTCTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24516</snp_id>
        <super_contig>c000800880.Contig4</super_contig>
        <contig_pos>30115</contig_pos>
        <strand>+</strand>
        <context>CCARGATACA[C/T]GTRAGTCYTR</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATGAGATCAGAAAATGAAAAAGGACAAGATGGCCATCCAGGATACA</left_flank>
        <right_flank>GTAAGTCTTCTACGGTACCCCAAAAAAGTTGTCAAGAATTTCTGAATTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGAAGATCATGGCTGAACTTGATGGAAGGTTGAATGGAACAAGTTTTTCCATTATTTTCAAATTTCCAGATGCTCCGAACTGGACGCTGAAATTGATAAGAATGGAAAAGTGACAGTTCCAGTCGATTTCTTCGATTTGACAGTTGGAAGTGTTATCAATAGTTTGCTGGTTGGAAAGCGATTCGATGAGAATTCAAAGGACGAATTTTTGAAAATCAAAAAAATGTTCGATGACTCATCGGAGACGTTTAACCTTTTCGATTTGAATGTGCCTGTGTGGTTTTTGAAATGGGTGCTTCCTTGGAGGTTCCGAATCACGTGGGATGCAAGACAGAATATTTTGAGTCATGTGGGAAAAGAAGCGGTTGAGAGGTTTCAAAAACTGAAAGATGGAACTTATGATCTGGATTCTGAGGAACCTAAAGATCTAGTGGATTGCTTTTTGGCAAAAATGAGATCAGAAAATGAAAAAGGACAAGATGGCCATCCAGGATACAAGTAAGTCTTCTACGGTACCCCAAAAAAGTTGTCAAGAATTTCTGAATTTCCGCGTTTCCGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATGTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAATAAAAAATCGTTTCAGAAAATCTGAAATCCAAAAATCTGGATTTTCAAAAAACGAGAAAATTGTAAAACTCAAAAAAATCTGGAATTTAAAAAATTTATTCGAATTCCTGATC</canonical>
            <polymorphic>GAAGAAGATCATGGCTGAACTTGATGGAAGGTTGAATGGAACAAGTTTTTCCATTATTTTCAAATTTCCAGATGCTCCGAACTGGACGCTGAAATTGATAAGAATGGAAAAGTGACAGTTCCAGTCGATTTCTTCGATTTGACAGTTGGAAGTGTTATCAATAGTTTGCTGGTTGGAAAGCGATTCGATGAGAATTCAAAGGACGAATTTTTGAAAATCAAAAAAATGTTCGATGACTCATCGGAGACGTTTAACCTTTTCGATTTGAATGTGCCTGTGTGGTTTTTGAAATGGGTGCTTCCTTGGAGGTTCCGAATCACGTGGGATGCAAGACAGAATATTTTGAGTCATGTGGGAAAAGAAGCGGTTGAGAGGTTTCAAAAACTGAAAGATGGAACTTATGATCTGGATTCTGAGGAACCTAAAGATCTAGTGGATTGCTTTTTGGCAAAAATGAGATCAGAAAATGAAAAAGGACAAGATGGCCATCCAGGATACAYGTAAGTCTTCTACGGTACCCCAAAAAAGTTGTCAAGAATTTCTGAATTTCCGCGTTTCCGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATGTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAATAAAAAATCGTTTCAGAAAATCTGAAATCCAAAAATCTGGATTTTCAAAAAACGAGAAAATTGTAAAACTCAAAAAAATCTGGAATTTAAAAAATTTATTCGAATTCCTGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCAAAAATGAGATCAGAAA</pcr_primer_p1>
		<pcr_primer_p2>AATCGTTCATTTAATGGATCAG</pcr_primer_p2>
		<pcr_amplicon_size>570</pcr_amplicon_size>
		<canonical_amplicon>GGCAAAAATGAGATCAGAAAATGAAAAAGGACAAGATGGCCATCCAGGATACAAGTAAGTCTTCTACGGTACCCC</canonical_amplicon>
		<polymorphic_amplicon>GGCAAAAATGAGATCAGAAAATGAAAAAGGACAAGATGGCCATCCAGGATACAYGTAAGTCTTCTACGGTACCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24517</snp_id>
        <super_contig>c000800880.Contig4</super_contig>
        <contig_pos>30118</contig_pos>
        <strand>+</strand>
        <context>RGATACAYGT[A/G]AGTCYTRTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGAGATCAGAAAATGAAAAAGGACAAGATGGCCATCCAGGATACAAGT</left_flank>
        <right_flank>AGTCTTCTACGGTACCCCAAAAAAGTTGTCAAGAATTTCTGAATTTCCGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGATCATGGCTGAACTTGATGGAAGGTTGAATGGAACAAGTTTTTCCATTATTTTCAAATTTCCAGATGCTCCGAACTGGACGCTGAAATTGATAAGAATGGAAAAGTGACAGTTCCAGTCGATTTCTTCGATTTGACAGTTGGAAGTGTTATCAATAGTTTGCTGGTTGGAAAGCGATTCGATGAGAATTCAAAGGACGAATTTTTGAAAATCAAAAAAATGTTCGATGACTCATCGGAGACGTTTAACCTTTTCGATTTGAATGTGCCTGTGTGGTTTTTGAAATGGGTGCTTCCTTGGAGGTTCCGAATCACGTGGGATGCAAGACAGAATATTTTGAGTCATGTGGGAAAAGAAGCGGTTGAGAGGTTTCAAAAACTGAAAGATGGAACTTATGATCTGGATTCTGAGGAACCTAAAGATCTAGTGGATTGCTTTTTGGCAAAAATGAGATCAGAAAATGAAAAAGGACAAGATGGCCATCCAGGATACAAGTAAGTCTTCTACGGTACCCCAAAAAAGTTGTCAAGAATTTCTGAATTTCCGCGTTTCCGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATGTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAATAAAAAATCGTTTCAGAAAATCTGAAATCCAAAAATCTGGATTTTCAAAAAACGAGAAAATTGTAAAACTCAAAAAAATCTGGAATTTAAAAAATTTATTCGAATTCCTGATCCAT</canonical>
            <polymorphic>GAAGATCATGGCTGAACTTGATGGAAGGTTGAATGGAACAAGTTTTTCCATTATTTTCAAATTTCCAGATGCTCCGAACTGGACGCTGAAATTGATAAGAATGGAAAAGTGACAGTTCCAGTCGATTTCTTCGATTTGACAGTTGGAAGTGTTATCAATAGTTTGCTGGTTGGAAAGCGATTCGATGAGAATTCAAAGGACGAATTTTTGAAAATCAAAAAAATGTTCGATGACTCATCGGAGACGTTTAACCTTTTCGATTTGAATGTGCCTGTGTGGTTTTTGAAATGGGTGCTTCCTTGGAGGTTCCGAATCACGTGGGATGCAAGACAGAATATTTTGAGTCATGTGGGAAAAGAAGCGGTTGAGAGGTTTCAAAAACTGAAAGATGGAACTTATGATCTGGATTCTGAGGAACCTAAAGATCTAGTGGATTGCTTTTTGGCAAAAATGAGATCAGAAAATGAAAAAGGACAAGATGGCCATCCAGGATACAAGTRAGTCTTCTACGGTACCCCAAAAAAGTTGTCAAGAATTTCTGAATTTCCGCGTTTCCGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATGTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAATAAAAAATCGTTTCAGAAAATCTGAAATCCAAAAATCTGGATTTTCAAAAAACGAGAAAATTGTAAAACTCAAAAAAATCTGGAATTTAAAAAATTTATTCGAATTCCTGATCCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCAAAAATGAGATCAGAAA</pcr_primer_p1>
		<pcr_primer_p2>AATCGTTCATTTAATGGATCAG</pcr_primer_p2>
		<pcr_amplicon_size>570</pcr_amplicon_size>
		<canonical_amplicon>GGCAAAAATGAGATCAGAAAATGAAAAAGGACAAGATGGCCATCCAGGATACAAGTAAGTCTTCTACGGTACCCCAAA</canonical_amplicon>
		<polymorphic_amplicon>GGCAAAAATGAGATCAGAAAATGAAAAAGGACAAGATGGCCATCCAGGATACAAGTRAGTCTTCTACGGTACCCCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24518</snp_id>
        <super_contig>c000800880.Contig4</super_contig>
        <contig_pos>30123</contig_pos>
        <strand>+</strand>
        <context>CAYGTRAGTC[C/T]TRTACGYTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATCAGAAAATGAAAAAGGACAAGATGGCCATCCAGGATACAAGTAAGTC</left_flank>
        <right_flank>TCTACGGTACCCCAAAAAAGTTGTCAAGAATTTCTGAATTTCCGCGTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATGGCTGAACTTGATGGAAGGTTGAATGGAACAAGTTTTTCCATTATTTTCAAATTTCCAGATGCTCCGAACTGGACGCTGAAATTGATAAGAATGGAAAAGTGACAGTTCCAGTCGATTTCTTCGATTTGACAGTTGGAAGTGTTATCAATAGTTTGCTGGTTGGAAAGCGATTCGATGAGAATTCAAAGGACGAATTTTTGAAAATCAAAAAAATGTTCGATGACTCATCGGAGACGTTTAACCTTTTCGATTTGAATGTGCCTGTGTGGTTTTTGAAATGGGTGCTTCCTTGGAGGTTCCGAATCACGTGGGATGCAAGACAGAATATTTTGAGTCATGTGGGAAAAGAAGCGGTTGAGAGGTTTCAAAAACTGAAAGATGGAACTTATGATCTGGATTCTGAGGAACCTAAAGATCTAGTGGATTGCTTTTTGGCAAAAATGAGATCAGAAAATGAAAAAGGACAAGATGGCCATCCAGGATACAAGTAAGTCTTCTACGGTACCCCAAAAAAGTTGTCAAGAATTTCTGAATTTCCGCGTTTCCGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATGTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAATAAAAAATCGTTTCAGAAAATCTGAAATCCAAAAATCTGGATTTTCAAAAAACGAGAAAATTGTAAAACTCAAAAAAATCTGGAATTTAAAAAATTTATTCGAATTCCTGATCCATTAAAT</canonical>
            <polymorphic>TCATGGCTGAACTTGATGGAAGGTTGAATGGAACAAGTTTTTCCATTATTTTCAAATTTCCAGATGCTCCGAACTGGACGCTGAAATTGATAAGAATGGAAAAGTGACAGTTCCAGTCGATTTCTTCGATTTGACAGTTGGAAGTGTTATCAATAGTTTGCTGGTTGGAAAGCGATTCGATGAGAATTCAAAGGACGAATTTTTGAAAATCAAAAAAATGTTCGATGACTCATCGGAGACGTTTAACCTTTTCGATTTGAATGTGCCTGTGTGGTTTTTGAAATGGGTGCTTCCTTGGAGGTTCCGAATCACGTGGGATGCAAGACAGAATATTTTGAGTCATGTGGGAAAAGAAGCGGTTGAGAGGTTTCAAAAACTGAAAGATGGAACTTATGATCTGGATTCTGAGGAACCTAAAGATCTAGTGGATTGCTTTTTGGCAAAAATGAGATCAGAAAATGAAAAAGGACAAGATGGCCATCCAGGATACAAGTAAGTCYTCTACGGTACCCCAAAAAAGTTGTCAAGAATTTCTGAATTTCCGCGTTTCCGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATGTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAATAAAAAATCGTTTCAGAAAATCTGAAATCCAAAAATCTGGATTTTCAAAAAACGAGAAAATTGTAAAACTCAAAAAAATCTGGAATTTAAAAAATTTATTCGAATTCCTGATCCATTAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGATCAGAAAATGAAAAAGGAC</pcr_primer_p1>
		<pcr_primer_p2>AATCGTTCATTTAATGGATCAG</pcr_primer_p2>
		<pcr_amplicon_size>561</pcr_amplicon_size>
		<canonical_amplicon>GAGATCAGAAAATGAAAAAGGACAAGATGGCCATCCAGGATACAAGTAAGTCTTCTACGGTACCCCAAAAAAGT</canonical_amplicon>
		<polymorphic_amplicon>GAGATCAGAAAATGAAAAAGGACAAGATGGCCATCCAGGATACAAGTAAGTCYTCTACGGTACCCCAAAAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24519</snp_id>
        <super_contig>c000800880.Contig4</super_contig>
        <contig_pos>30125</contig_pos>
        <strand>+</strand>
        <context>YGTRAGTCYT[A/G]TACGYTACCC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAGAAAATGAAAAAGGACAAGATGGCCATCCAGGATACAAGTAAGTCTT</left_flank>
        <right_flank>TACGGTACCCCAAAAAAGTTGTCAAGAATTTCTGAATTTCCGCGTTTCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGCTGAACTTGATGGAAGGTTGAATGGAACAAGTTTTTCCATTATTTTCAAATTTCCAGATGCTCCGAACTGGACGCTGAAATTGATAAGAATGGAAAAGTGACAGTTCCAGTCGATTTCTTCGATTTGACAGTTGGAAGTGTTATCAATAGTTTGCTGGTTGGAAAGCGATTCGATGAGAATTCAAAGGACGAATTTTTGAAAATCAAAAAAATGTTCGATGACTCATCGGAGACGTTTAACCTTTTCGATTTGAATGTGCCTGTGTGGTTTTTGAAATGGGTGCTTCCTTGGAGGTTCCGAATCACGTGGGATGCAAGACAGAATATTTTGAGTCATGTGGGAAAAGAAGCGGTTGAGAGGTTTCAAAAACTGAAAGATGGAACTTATGATCTGGATTCTGAGGAACCTAAAGATCTAGTGGATTGCTTTTTGGCAAAAATGAGATCAGAAAATGAAAAAGGACAAGATGGCCATCCAGGATACAAGTAAGTCTTCTACGGTACCCCAAAAAAGTTGTCAAGAATTTCTGAATTTCCGCGTTTCCGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATGTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAATAAAAAATCGTTTCAGAAAATCTGAAATCCAAAAATCTGGATTTTCAAAAAACGAGAAAATTGTAAAACTCAAAAAAATCTGGAATTTAAAAAATTTATTCGAATTCCTGATCCATTAAATGA</canonical>
            <polymorphic>ATGGCTGAACTTGATGGAAGGTTGAATGGAACAAGTTTTTCCATTATTTTCAAATTTCCAGATGCTCCGAACTGGACGCTGAAATTGATAAGAATGGAAAAGTGACAGTTCCAGTCGATTTCTTCGATTTGACAGTTGGAAGTGTTATCAATAGTTTGCTGGTTGGAAAGCGATTCGATGAGAATTCAAAGGACGAATTTTTGAAAATCAAAAAAATGTTCGATGACTCATCGGAGACGTTTAACCTTTTCGATTTGAATGTGCCTGTGTGGTTTTTGAAATGGGTGCTTCCTTGGAGGTTCCGAATCACGTGGGATGCAAGACAGAATATTTTGAGTCATGTGGGAAAAGAAGCGGTTGAGAGGTTTCAAAAACTGAAAGATGGAACTTATGATCTGGATTCTGAGGAACCTAAAGATCTAGTGGATTGCTTTTTGGCAAAAATGAGATCAGAAAATGAAAAAGGACAAGATGGCCATCCAGGATACAAGTAAGTCTTRTACGGTACCCCAAAAAAGTTGTCAAGAATTTCTGAATTTCCGCGTTTCCGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATGTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAATAAAAAATCGTTTCAGAAAATCTGAAATCCAAAAATCTGGATTTTCAAAAAACGAGAAAATTGTAAAACTCAAAAAAATCTGGAATTTAAAAAATTTATTCGAATTCCTGATCCATTAAATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAGAAAATGAAAAAGGACAA</pcr_primer_p1>
		<pcr_primer_p2>AATCGTTCATTTAATGGATCAG</pcr_primer_p2>
		<pcr_amplicon_size>558</pcr_amplicon_size>
		<canonical_amplicon>ATCAGAAAATGAAAAAGGACAAGATGGCCATCCAGGATACAAGTAAGTCTTCTACGGTACCCCAAAAAAGTTG</canonical_amplicon>
		<polymorphic_amplicon>ATCAGAAAATGAAAAAGGACAAGATGGCCATCCAGGATACAAGTAAGTCTTRTACGGTACCCCAAAAAAGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24520</snp_id>
        <super_contig>c000800880.Contig4</super_contig>
        <contig_pos>30130</contig_pos>
        <strand>+</strand>
        <context>GTCYTRTACG[C/T]TACCCCAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATGAAAAAGGACAAGATGGCCATCCAGGATACAAGTAAGTCTTCTACG</left_flank>
        <right_flank>TACCCCAAAAAAGTTGTCAAGAATTTCTGAATTTCCGCGTTTCCGAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAACTTGATGGAAGGTTGAATGGAACAAGTTTTTCCATTATTTTCAAATTTCCAGATGCTCCGAACTGGACGCTGAAATTGATAAGAATGGAAAAGTGACAGTTCCAGTCGATTTCTTCGATTTGACAGTTGGAAGTGTTATCAATAGTTTGCTGGTTGGAAAGCGATTCGATGAGAATTCAAAGGACGAATTTTTGAAAATCAAAAAAATGTTCGATGACTCATCGGAGACGTTTAACCTTTTCGATTTGAATGTGCCTGTGTGGTTTTTGAAATGGGTGCTTCCTTGGAGGTTCCGAATCACGTGGGATGCAAGACAGAATATTTTGAGTCATGTGGGAAAAGAAGCGGTTGAGAGGTTTCAAAAACTGAAAGATGGAACTTATGATCTGGATTCTGAGGAACCTAAAGATCTAGTGGATTGCTTTTTGGCAAAAATGAGATCAGAAAATGAAAAAGGACAAGATGGCCATCCAGGATACAAGTAAGTCTTCTACGGTACCCCAAAAAAGTTGTCAAGAATTTCTGAATTTCCGCGTTTCCGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATGTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAATAAAAAATCGTTTCAGAAAATCTGAAATCCAAAAATCTGGATTTTCAAAAAACGAGAAAATTGTAAAACTCAAAAAAATCTGGAATTTAAAAAATTTATTCGAATTCCTGATCCATTAAATGAACGAT</canonical>
            <polymorphic>TGAACTTGATGGAAGGTTGAATGGAACAAGTTTTTCCATTATTTTCAAATTTCCAGATGCTCCGAACTGGACGCTGAAATTGATAAGAATGGAAAAGTGACAGTTCCAGTCGATTTCTTCGATTTGACAGTTGGAAGTGTTATCAATAGTTTGCTGGTTGGAAAGCGATTCGATGAGAATTCAAAGGACGAATTTTTGAAAATCAAAAAAATGTTCGATGACTCATCGGAGACGTTTAACCTTTTCGATTTGAATGTGCCTGTGTGGTTTTTGAAATGGGTGCTTCCTTGGAGGTTCCGAATCACGTGGGATGCAAGACAGAATATTTTGAGTCATGTGGGAAAAGAAGCGGTTGAGAGGTTTCAAAAACTGAAAGATGGAACTTATGATCTGGATTCTGAGGAACCTAAAGATCTAGTGGATTGCTTTTTGGCAAAAATGAGATCAGAAAATGAAAAAGGACAAGATGGCCATCCAGGATACAAGTAAGTCTTCTACGYTACCCCAAAAAAGTTGTCAAGAATTTCTGAATTTCCGCGTTTCCGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATGTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAATAAAAAATCGTTTCAGAAAATCTGAAATCCAAAAATCTGGATTTTCAAAAAACGAGAAAATTGTAAAACTCAAAAAAATCTGGAATTTAAAAAATTTATTCGAATTCCTGATCCATTAAATGAACGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGTACC</site>
                <isoschizomers>
                    <enzyme>Acc65I</enzyme>
                    <enzyme>Asp718I</enzyme>
                    <enzyme>KpnI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>499 295 109 97</canonical_bands>
                <polymorphic_bands>596 295 109</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 370 102 27</canonical_bands>
                <polymorphic_bands>871 102 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATGAAAAAGGACAAGATG</pcr_primer_p1>
		<pcr_primer_p2>AATCGTTCATTTAATGGATCAG</pcr_primer_p2>
		<pcr_amplicon_size>554</pcr_amplicon_size>
		<canonical_amplicon>GAAAATGAAAAAGGACAAGATGGCCATCCAGGATACAAGTAAGTCTTCTACGGTACCCCAAAAAAGTTGTCAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATGAAAAAGGACAAGATGGCCATCCAGGATACAAGTAAGTCTTCTACGYTACCCCAAAAAAGTTGTCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24521</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>24635</contig_pos>
        <strand>+</strand>
        <context>AAGCTCCAAT[A/T]TTCTTCAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCTAATTTGATGTCGTTTTTGACTCCAAAAAGCTCCCAAAAAGCTCCAAT</left_flank>
        <right_flank>TTCTTCAGAATTTTCGAATTTTTCGACTTTCTTGTGGGATCAAAATGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCATTTTCAGTCCATTTTTCGCCATTTTTTGACAATTTTTGGGATATTTTTGAGCCATTTTCATCCTTTTTCGGTCATTTTTCAGTAATTTTCATCCATTTTCAGCTGATTTTCAGCATATTTTCAGTCATTTTTAGACCCTTTTTAGCCGCTTTTGAGCCTTTGAAGATCATTTTTGAGAAATTTTTAAGCCATTTCTAGCAATTTTCAAGCTCTTTCAAAGCTACTTTTTAGCTAATTTTAAGGCATTTTTTAGTCATTATTGATTATTTTTGGGCTATTTTCAAGCTATTTTAAAGCCATTTCCAGTTATTTTTTGGTTATTTTTTTACTTTTAGATTATTTTCAGACTAATTTCCCCCATTTTTGGACTATTTTCCCCCTGAAAAGTTTCGAAATTCCCTACAAAATGTAAACTAAAAAATTCCCGAATCTCCCCTCCGGAACCGCCTAATTTGATGTCGTTTTTGACTCCAAAAAGCTCCCAAAAAGCTCCAATATTCTTCAGAATTTTCGAATTTTTCGACTTTCTTGTGGGATCAAAATGTTTGAAAATTCTGTGCTGTGTGTGTCTTCAGAAGACGTCGACGACGTCTTCCGGAGTATCTTCTATTTGGATTTGTGTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGA</canonical>
            <polymorphic>CCATTTTCAGTCCATTTTTCGCCATTTTTTGACAATTTTTGGGATATTTTTGAGCCATTTTCATCCTTTTTCGGTCATTTTTCAGTAATTTTCATCCATTTTCAGCTGATTTTCAGCATATTTTCAGTCATTTTTAGACCCTTTTTAGCCGCTTTTGAGCCTTTGAAGATCATTTTTGAGAAATTTTTAAGCCATTTCTAGCAATTTTCAAGCTCTTTCAAAGCTACTTTTTAGCTAATTTTAAGGCATTTTTTAGTCATTATTGATTATTTTTGGGCTATTTTCAAGCTATTTTAAAGCCATTTCCAGTTATTTTTTGGTTATTTTTTTACTTTTAGATTATTTTCAGACTAATTTCCCCCATTTTTGGACTATTTTCCCCCTGAAAAGTTTCGAAATTCCCTACAAAATGTAAACTAAAAAATTCCCGAATCTCCCCTCCGGAACCGCCTAATTTGATGTCGTTTTTGACTCCAAAAAGCTCCCAAAAAGCTCCAATWTTCTTCAGAATTTTCGAATTTTTCGACTTTCTTGTGGGATCAAAATGTTTGAAAATTCTGTGCTGTGTGTGTCTTCAGAAGACGTCGACGACGTCTTCCGGAGTATCTTCTATTTGGATTTGTGTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCCTACAAAATGTAAACTAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGTACTAACGAGATTTGATTGTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCCCTACAAAATGTAAACTAAAAAATTCCCGAATCTCCCCTCCGGAACCGCCTAATTTGATGTCGTTTTTGACTCCAAAAAGCTCCCAAAAAGCTCCAATATTCTTCAGAATTTTCGAATTTTTCGACTTTCTTGTGGGATCAAAATGTTTGAAAATTCTGTGCTGTGTGTGTCTTCAGAAGACGTCGACGACGTCTTCCGGAGTATCTTCTATTTGGATTTGTGTGACAATCAAATCTCGTTAGTACT</canonical_amplicon>
		<polymorphic_amplicon>TTCCCTACAAAATGTAAACTAAAAAATTCCCGAATCTCCCCTCCGGAACCGCCTAATTTGATGTCGTTTTTGACTCCAAAAAGCTCCCAAAAAGCTCCAATWTTCTTCAGAATTTTCGAATTTTTCGACTTTCTTGTGGGATCAAAATGTTTGAAAATTCTGTGCTGTGTGTGTCTTCAGAAGACGTCGACGACGTCTTCCGGAGTATCTTCTATTTGGATTTGTGTGACAATCAAATCTCGTTAGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24522</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>24839</contig_pos>
        <strand>+</strand>
        <context>CAAAAAAARK[A/G]TTTTTTKGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAG</left_flank>
        <right_flank>TTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCAAGCTCTTTCAAAGCTACTTTTTAGCTAATTTTAAGGCATTTTTTAGTCATTATTGATTATTTTTGGGCTATTTTCAAGCTATTTTAAAGCCATTTCCAGTTATTTTTTGGTTATTTTTTTACTTTTAGATTATTTTCAGACTAATTTCCCCCATTTTTGGACTATTTTCCCCCTGAAAAGTTTCGAAATTCCCTACAAAATGTAAACTAAAAAATTCCCGAATCTCCCCTCCGGAACCGCCTAATTTGATGTCGTTTTTGACTCCAAAAAGCTCCCAAAAAGCTCCAATATTCTTCAGAATTTTCGAATTTTTCGACTTTCTTGTGGGATCAAAATGTTTGAAAATTCTGTGCTGTGTGTGTCTTCAGAAGACGTCGACGACGTCTTCCGGAGTATCTTCTATTTGGATTTGTGTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAA</canonical>
            <polymorphic>TTTTCAAGCTCTTTCAAAGCTACTTTTTAGCTAATTTTAAGGCATTTTTTAGTCATTATTGATTATTTTTGGGCTATTTTCAAGCTATTTTAAAGCCATTTCCAGTTATTTTTTGGTTATTTTTTTACTTTTAGATTATTTTCAGACTAATTTCCCCCATTTTTGGACTATTTTCCCCCTGAAAAGTTTCGAAATTCCCTACAAAATGTAAACTAAAAAATTCCCGAATCTCCCCTCCGGAACCGCCTAATTTGATGTCGTTTTTGACTCCAAAAAGCTCCCAAAAAGCTCCAATATTCTTCAGAATTTTCGAATTTTTCGACTTTCTTGTGGGATCAAAATGTTTGAAAATTCTGTGCTGTGTGTGTCTTCAGAAGACGTCGACGACGTCTTCCGGAGTATCTTCTATTTGGATTTGTGTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGRTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTACTAGTCCCATGCTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>CATTTTTGTTTGTTCACTACGA</pcr_primer_p2>
		<pcr_amplicon_size>499</pcr_amplicon_size>
		<canonical_amplicon>TAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATG</canonical_amplicon>
		<polymorphic_amplicon>TAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGRTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24523</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>24846</contig_pos>
        <strand>+</strand>
        <context>ARKRTTTTTT[G/T]GGTTTTTTRG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTT</left_flank>
        <right_flank>GGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCTTTCAAAGCTACTTTTTAGCTAATTTTAAGGCATTTTTTAGTCATTATTGATTATTTTTGGGCTATTTTCAAGCTATTTTAAAGCCATTTCCAGTTATTTTTTGGTTATTTTTTTACTTTTAGATTATTTTCAGACTAATTTCCCCCATTTTTGGACTATTTTCCCCCTGAAAAGTTTCGAAATTCCCTACAAAATGTAAACTAAAAAATTCCCGAATCTCCCCTCCGGAACCGCCTAATTTGATGTCGTTTTTGACTCCAAAAAGCTCCCAAAAAGCTCCAATATTCTTCAGAATTTTCGAATTTTTCGACTTTCTTGTGGGATCAAAATGTTTGAAAATTCTGTGCTGTGTGTGTCTTCAGAAGACGTCGACGACGTCTTCCGGAGTATCTTCTATTTGGATTTGTGTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTAT</canonical>
            <polymorphic>GCTCTTTCAAAGCTACTTTTTAGCTAATTTTAAGGCATTTTTTAGTCATTATTGATTATTTTTGGGCTATTTTCAAGCTATTTTAAAGCCATTTCCAGTTATTTTTTGGTTATTTTTTTACTTTTAGATTATTTTCAGACTAATTTCCCCCATTTTTGGACTATTTTCCCCCTGAAAAGTTTCGAAATTCCCTACAAAATGTAAACTAAAAAATTCCCGAATCTCCCCTCCGGAACCGCCTAATTTGATGTCGTTTTTGACTCCAAAAAGCTCCCAAAAAGCTCCAATATTCTTCAGAATTTTCGAATTTTTCGACTTTCTTGTGGGATCAAAATGTTTGAAAATTCTGTGCTGTGTGTGTCTTCAGAAGACGTCGACGACGTCTTCCGGAGTATCTTCTATTTGGATTTGTGTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTKGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTACTAGTCCCATGCTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>CATTTTTGTTTGTTCACTACGA</pcr_primer_p2>
		<pcr_amplicon_size>499</pcr_amplicon_size>
		<canonical_amplicon>TAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATG</canonical_amplicon>
		<polymorphic_amplicon>TAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTKGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24524</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>24855</contig_pos>
        <strand>+</strand>
        <context>TKGGTTTTTT[A/G]GGTTGGAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTT</left_flank>
        <right_flank>GGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCTACTTTTTAGCTAATTTTAAGGCATTTTTTAGTCATTATTGATTATTTTTGGGCTATTTTCAAGCTATTTTAAAGCCATTTCCAGTTATTTTTTGGTTATTTTTTTACTTTTAGATTATTTTCAGACTAATTTCCCCCATTTTTGGACTATTTTCCCCCTGAAAAGTTTCGAAATTCCCTACAAAATGTAAACTAAAAAATTCCCGAATCTCCCCTCCGGAACCGCCTAATTTGATGTCGTTTTTGACTCCAAAAAGCTCCCAAAAAGCTCCAATATTCTTCAGAATTTTCGAATTTTTCGACTTTCTTGTGGGATCAAAATGTTTGAAAATTCTGTGCTGTGTGTGTCTTCAGAAGACGTCGACGACGTCTTCCGGAGTATCTTCTATTTGGATTTGTGTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAA</canonical>
            <polymorphic>AAGCTACTTTTTAGCTAATTTTAAGGCATTTTTTAGTCATTATTGATTATTTTTGGGCTATTTTCAAGCTATTTTAAAGCCATTTCCAGTTATTTTTTGGTTATTTTTTTACTTTTAGATTATTTTCAGACTAATTTCCCCCATTTTTGGACTATTTTCCCCCTGAAAAGTTTCGAAATTCCCTACAAAATGTAAACTAAAAAATTCCCGAATCTCCCCTCCGGAACCGCCTAATTTGATGTCGTTTTTGACTCCAAAAAGCTCCCAAAAAGCTCCAATATTCTTCAGAATTTTCGAATTTTTCGACTTTCTTGTGGGATCAAAATGTTTGAAAATTCTGTGCTGTGTGTGTCTTCAGAAGACGTCGACGACGTCTTCCGGAGTATCTTCTATTTGGATTTGTGTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTRGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTACTAGTCCCATGCTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>CATTTTTGTTTGTTCACTACGA</pcr_primer_p2>
		<pcr_amplicon_size>499</pcr_amplicon_size>
		<canonical_amplicon>TAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATG</canonical_amplicon>
		<polymorphic_amplicon>TAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTRGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24525</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>24882</contig_pos>
        <strand></strand>
        <context>GAAAATTTTA[A/G]TCTGAAATAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTA</left_flank>
        <right_flank>TCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTTAGTCATTATTGATTATTTTTGGGCTATTTTCAAGCTATTTTAAAGCCATTTCCAGTTATTTTTTGGTTATTTTTTTACTTTTAGATTATTTTCAGACTAATTTCCCCCATTTTTGGACTATTTTCCCCCTGAAAAGTTTCGAAATTCCCTACAAAATGTAAACTAAAAAATTCCCGAATCTCCCCTCCGGAACCGCCTAATTTGATGTCGTTTTTGACTCCAAAAAGCTCCCAAAAAGCTCCAATATTCTTCAGAATTTTCGAATTTTTCGACTTTCTTGTGGGATCAAAATGTTTGAAAATTCTGTGCTGTGTGTGTCTTCAGAAGACGTCGACGACGTCTTCCGGAGTATCTTCTATTTGGATTTGTGTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGT</canonical>
            <polymorphic>ATTTTTTAGTCATTATTGATTATTTTTGGGCTATTTTCAAGCTATTTTAAAGCCATTTCCAGTTATTTTTTGGTTATTTTTTTACTTTTAGATTATTTTCAGACTAATTTCCCCCATTTTTGGACTATTTTCCCCCTGAAAAGTTTCGAAATTCCCTACAAAATGTAAACTAAAAAATTCCCGAATCTCCCCTCCGGAACCGCCTAATTTGATGTCGTTTTTGACTCCAAAAAGCTCCCAAAAAGCTCCAATATTCTTCAGAATTTTCGAATTTTTCGACTTTCTTGTGGGATCAAAATGTTTGAAAATTCTGTGCTGTGTGTGTCTTCAGAAGACGTCGACGACGTCTTCCGGAGTATCTTCTATTTGGATTTGTGTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTARTCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>450 381 52 47 37 24 9</canonical_bands>
                <polymorphic_bands>474 381 52 47 37 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGTACTAGTCCCATGCTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>CATTTTTGTTTGTTCACTACGA</pcr_primer_p2>
		<pcr_amplicon_size>499</pcr_amplicon_size>
		<canonical_amplicon>TAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATG</canonical_amplicon>
		<polymorphic_amplicon>TAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTARTCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24526</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>24937</contig_pos>
        <strand></strand>
        <context>ttatgttatc[A/G]ctttcttact</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATC</left_flank>
        <right_flank>CTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCCAGTTATTTTTTGGTTATTTTTTTACTTTTAGATTATTTTCAGACTAATTTCCCCCATTTTTGGACTATTTTCCCCCTGAAAAGTTTCGAAATTCCCTACAAAATGTAAACTAAAAAATTCCCGAATCTCCCCTCCGGAACCGCCTAATTTGATGTCGTTTTTGACTCCAAAAAGCTCCCAAAAAGCTCCAATATTCTTCAGAATTTTCGAATTTTTCGACTTTCTTGTGGGATCAAAATGTTTGAAAATTCTGTGCTGTGTGTGTCTTCAGAAGACGTCGACGACGTCTTCCGGAGTATCTTCTATTTGGATTTGTGTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAAT</canonical>
            <polymorphic>TTTCCAGTTATTTTTTGGTTATTTTTTTACTTTTAGATTATTTTCAGACTAATTTCCCCCATTTTTGGACTATTTTCCCCCTGAAAAGTTTCGAAATTCCCTACAAAATGTAAACTAAAAAATTCCCGAATCTCCCCTCCGGAACCGCCTAATTTGATGTCGTTTTTGACTCCAAAAAGCTCCCAAAAAGCTCCAATATTCTTCAGAATTTTCGAATTTTTCGACTTTCTTGTGGGATCAAAATGTTTGAAAATTCTGTGCTGTGTGTGTCTTCAGAAGACGTCGACGACGTCTTCCGGAGTATCTTCTATTTGGATTTGTGTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCRCTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>234 185 176 53 46 44 40 39 30 26 25 22 22 19 17 9 5 2 2 2 2</canonical_bands>
                <polymorphic_bands>234 198 185 53 46 44 40 39 30 26 25 22 19 17 9 5 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGTACTAGTCCCATGCTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>CATTTTTGTTTGTTCACTACGA</pcr_primer_p2>
		<pcr_amplicon_size>499</pcr_amplicon_size>
		<canonical_amplicon>TAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATG</canonical_amplicon>
		<polymorphic_amplicon>TAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCRCTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24527</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>25066</contig_pos>
        <strand></strand>
        <context>aatgggcgga[G/T]actagtcgtg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGA</left_flank>
        <right_flank>ACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAAT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTCCCCTCCGGAACCGCCTAATTTGATGTCGTTTTTGACTCCAAAAAGCTCCCAAAAAGCTCCAATATTCTTCAGAATTTTCGAATTTTTCGACTTTCTTGTGGGATCAAAATGTTTGAAAATTCTGTGCTGTGTGTGTCTTCAGAAGACGTCGACGACGTCTTCCGGAGTATCTTCTATTTGGATTTGTGTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAA</canonical>
            <polymorphic>ATCTCCCCTCCGGAACCGCCTAATTTGATGTCGTTTTTGACTCCAAAAAGCTCCCAAAAAGCTCCAATATTCTTCAGAATTTTCGAATTTTTCGACTTTCTTGTGGGATCAAAATGTTTGAAAATTCTGTGCTGTGTGTGTCTTCAGAAGACGTCGACGACGTCTTCCGGAGTATCTTCTATTTGGATTTGTGTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAKACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTACTAGTCCCATGCTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>CATTTTTGTTTGTTCACTACGA</pcr_primer_p2>
		<pcr_amplicon_size>499</pcr_amplicon_size>
		<canonical_amplicon>TAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATG</canonical_amplicon>
		<polymorphic_amplicon>TAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAKACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24528</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>25108</contig_pos>
        <strand></strand>
        <context>atgatgcgct[C/G]aaaacaatgr</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCT</left_flank>
        <right_flank>AAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAAT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAAAAGCTCCCAAAAAGCTCCAATATTCTTCAGAATTTTCGAATTTTTCGACTTTCTTGTGGGATCAAAATGTTTGAAAATTCTGTGCTGTGTGTGTCTTCAGAAGACGTCGACGACGTCTTCCGGAGTATCTTCTATTTGGATTTGTGTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACC</canonical>
            <polymorphic>CCAAAAAGCTCCCAAAAAGCTCCAATATTCTTCAGAATTTTCGAATTTTTCGACTTTCTTGTGGGATCAAAATGTTTGAAAATTCTGTGCTGTGTGTGTCTTCAGAAGACGTCGACGACGTCTTCCGGAGTATCTTCTATTTGGATTTGTGTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTSAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTACTAGTCCCATGCTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>CATTTTTGTTTGTTCACTACGA</pcr_primer_p2>
		<pcr_amplicon_size>499</pcr_amplicon_size>
		<canonical_amplicon>TAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATG</canonical_amplicon>
		<polymorphic_amplicon>TAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTSAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24529</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>25118</contig_pos>
        <strand></strand>
        <context>saaaacaatg[A/G]agagaactag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATG</left_flank>
        <right_flank>AGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCAAAAAGCTCCAATATTCTTCAGAATTTTCGAATTTTTCGACTTTCTTGTGGGATCAAAATGTTTGAAAATTCTGTGCTGTGTGTGTCTTCAGAAGACGTCGACGACGTCTTCCGGAGTATCTTCTATTTGGATTTGTGTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATT</canonical>
            <polymorphic>CCCAAAAAGCTCCAATATTCTTCAGAATTTTCGAATTTTTCGACTTTCTTGTGGGATCAAAATGTTTGAAAATTCTGTGCTGTGTGTGTCTTCAGAAGACGTCGACGACGTCTTCCGGAGTATCTTCTATTTGGATTTGTGTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGRAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTACTAGTCCCATGCTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>CATTTTTGTTTGTTCACTACGA</pcr_primer_p2>
		<pcr_amplicon_size>499</pcr_amplicon_size>
		<canonical_amplicon>TAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATG</canonical_amplicon>
		<polymorphic_amplicon>TAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGRAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24530</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>25162</contig_pos>
        <strand></strand>
        <context>ccgaaatttt[C/G]tgaattcaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTT</left_flank>
        <right_flank>TGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTTGTGGGATCAAAATGTTTGAAAATTCTGTGCTGTGTGTGTCTTCAGAAGACGTCGACGACGTCTTCCGGAGTATCTTCTATTTGGATTTGTGTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCT</canonical>
            <polymorphic>TTTCTTGTGGGATCAAAATGTTTGAAAATTCTGTGCTGTGTGTGTCTTCAGAAGACGTCGACGACGTCTTCCGGAGTATCTTCTATTTGGATTTGTGTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTSTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>499 173 130 126 50 22</canonical_bands>
                <polymorphic_bands>521 173 130 126 50</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGTACTAGTCCCATGCTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>CATTTTTGTTTGTTCACTACGA</pcr_primer_p2>
		<pcr_amplicon_size>499</pcr_amplicon_size>
		<canonical_amplicon>TAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATG</canonical_amplicon>
		<polymorphic_amplicon>TAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTSTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24531</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>25248</contig_pos>
        <strand>+</strand>
        <context>TTTGGATTTT[C/T]CGTARTCGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTT</left_flank>
        <right_flank>CGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGATTTGTGTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCCCCTCTTTGTAGT</canonical>
            <polymorphic>TTGGATTTGTGTGACAATCAAATCTCGTTAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTYCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCCCCTCTTTGTAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTACTAGTCCCATGCTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>GGACCACACCATCTCATAATA</pcr_primer_p2>
		<pcr_amplicon_size>535</pcr_amplicon_size>
		<canonical_amplicon>TAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCC</canonical_amplicon>
		<polymorphic_amplicon>TAGTACTAGTCCCATGCTTTTTGAGGAAAATTTTTTTTGAAGCCAAAAAAACCAAAAAAAAGTTTTTTTTGGTTTTTTTGGTTGGAAATTTGACTGAAAATTTTAATCTGAAATACCTTTTTTTCTTTAAAAAACTTAAAATAGTCGAAATTATGTTATCACTTTCTTACTCAGCTCATCGTGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGTCCACTTTAATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTYCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24532</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>25526</contig_pos>
        <strand>+</strand>
        <context>ACCTGTTAGG[C/G]CACCTGGGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGG</left_flank>
        <right_flank>CACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGC</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCCCCTCTTTGTAGTATAATACATTTATACAATTTATCTCGAAAAACTTTTCCCCTCCTCATTTTTCCACATCACCGAACATGACACAGACGATGGATGATCCCTATTATACTATTAGGTAGCTGTCGCTAGTTCTTCATTTTTCAGTTTTTCAGCAGATTTTCAAAATTTTGAATAGTTTGTTTTATATATGTTTGTAGCATTTTTTATGATCTACATTTTCAAATTTAGATAATTCAAAAATGGTGAATTTGAAGGAAGTTACAAACCAAAACGTATCAGTGATCTCTTTT</canonical>
            <polymorphic>TGCGTCGCGTGTCTAACAGAACTTTTCAAAATGGGCGGAGACTAGTCGTGTTTGAGCTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGSCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCCCCTCTTTGTAGTATAATACATTTATACAATTTATCTCGAAAAACTTTTCCCCTCCTCATTTTTCCACATCACCGAACATGACACAGACGATGGATGATCCCTATTATACTATTAGGTAGCTGTCGCTAGTTCTTCATTTTTCAGTTTTTCAGCAGATTTTCAAAATTTTGAATAGTTTGTTTTATATATGTTTGTAGCATTTTTTATGATCTACATTTTCAAATTTAGATAATTCAAAAATGGTGAATTTGAAGGAAGTTACAAACCAAAACGTATCAGTGATCTCTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>431 265 171 65 56 12</canonical_bands>
                <polymorphic_bands>496 265 171 56 12</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTAGAATTTTCCAGAACAAA</pcr_primer_p1>
		<pcr_primer_p2>TGTGATGGATTGTACAAATGAG</pcr_primer_p2>
		<pcr_amplicon_size>221</pcr_amplicon_size>
		<canonical_amplicon>TTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGSCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24533</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>25582</contig_pos>
        <strand>+</strand>
        <context>CATGCCWTTT[C/T]CCKGGTGGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTT</left_flank>
        <right_flank>CCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCA</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCCCCTCTTTGTAGTATAATACATTTATACAATTTATCTCGAAAAACTTTTCCCCTCCTCATTTTTCCACATCACCGAACATGACACAGACGATGGATGATCCCTATTATACTATTAGGTAGCTGTCGCTAGTTCTTCATTTTTCAGTTTTTCAGCAGATTTTCAAAATTTTGAATAGTTTGTTTTATATATGTTTGTAGCATTTTTTATGATCTACATTTTCAAATTTAGATAATTCAAAAATGGTGAATTTGAAGGAAGTTACAAACCAAAACGTATCAGTGATCTCTTTTTTTTCCATTCTGGTGCATTTTAGGTTATATTTACTGATGGGCTATTAGAACAGTTA</canonical>
            <polymorphic>CTCATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTYCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCCCCTCTTTGTAGTATAATACATTTATACAATTTATCTCGAAAAACTTTTCCCCTCCTCATTTTTCCACATCACCGAACATGACACAGACGATGGATGATCCCTATTATACTATTAGGTAGCTGTCGCTAGTTCTTCATTTTTCAGTTTTTCAGCAGATTTTCAAAATTTTGAATAGTTTGTTTTATATATGTTTGTAGCATTTTTTATGATCTACATTTTCAAATTTAGATAATTCAAAAATGGTGAATTTGAAGGAAGTTACAAACCAAAACGTATCAGTGATCTCTTTTTTTTCCATTCTGGTGCATTTTAGGTTATATTTACTGATGGGCTATTAGAACAGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTACAGTAATCCAGAACACCTG</pcr_primer_p1>
		<pcr_primer_p2>ACTACAAAGAGGGGAGAAGATAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCCCCTCTTTGTAGT</canonical_amplicon>
		<polymorphic_amplicon>ACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTYCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCCCCTCTTTGTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24534</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>25585</contig_pos>
        <strand>+</strand>
        <context>GCCWTTTYCC[G/T]GGTGGCTTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCC</left_flank>
        <right_flank>GGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACAT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCCCCTCTTTGTAGTATAATACATTTATACAATTTATCTCGAAAAACTTTTCCCCTCCTCATTTTTCCACATCACCGAACATGACACAGACGATGGATGATCCCTATTATACTATTAGGTAGCTGTCGCTAGTTCTTCATTTTTCAGTTTTTCAGCAGATTTTCAAAATTTTGAATAGTTTGTTTTATATATGTTTGTAGCATTTTTTATGATCTACATTTTCAAATTTAGATAATTCAAAAATGGTGAATTTGAAGGAAGTTACAAACCAAAACGTATCAGTGATCTCTTTTTTTTCCATTCTGGTGCATTTTAGGTTATATTTACTGATGGGCTATTAGAACAGTTATAA</canonical>
            <polymorphic>ATTTTGAAGCTCATGATGCGCTCAAAACAATGAAGAGAACTAGAAATTGAAATTCAGATGGATTTCCCGAAATTTTCTGAATTCAAAAAAAAACATTTTGGATTTTTTCAACTATTTTTTCAAATTTTTTCGAATTTCCCGCCGAATGGATTTTTGGATTTTTCGTAATCGTAGTGAACAAACAAAAATGACTACAGCATAATCATATTATGAGATGGTGTGGTCCAGGGAAAAAAGAGAATCAAACATCAAAACATTTATTTTGGTGAATTTCAAAATGTACTTCTGTTTATTTGTTCTATTTTGTGTATAATACAAAACATAGTGATTTTTAGAATTTTCCAGAACAAATCAGTTCAAAAATTTCTATTCCGGAGTAGCGGACAATTTGAGAAAACTACAAAAACCAAAAACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCKGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCCCCTCTTTGTAGTATAATACATTTATACAATTTATCTCGAAAAACTTTTCCCCTCCTCATTTTTCCACATCACCGAACATGACACAGACGATGGATGATCCCTATTATACTATTAGGTAGCTGTCGCTAGTTCTTCATTTTTCAGTTTTTCAGCAGATTTTCAAAATTTTGAATAGTTTGTTTTATATATGTTTGTAGCATTTTTTATGATCTACATTTTCAAATTTAGATAATTCAAAAATGGTGAATTTGAAGGAAGTTACAAACCAAAACGTATCAGTGATCTCTTTTTTTTCCATTCTGGTGCATTTTAGGTTATATTTACTGATGGGCTATTAGAACAGTTATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>503 352 145</canonical_bands>
                <polymorphic_bands>855 145</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 372 126</canonical_bands>
                <polymorphic_bands>628 372</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTACAGTAATCCAGAACACCTG</pcr_primer_p1>
		<pcr_primer_p2>ACTACAAAGAGGGGAGAAGATAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCGGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCCCCTCTTTGTAGT</canonical_amplicon>
		<polymorphic_amplicon>ACTACAGTAATCCAGAACACCTGTTAGGCCACCTGGGAATACTAAAGTTCATTTTTTGGAACCAAAAAAAGTTCCATGCCTTTTTCCKGGTGGCTTGGGAGGGGTGTCACCATCCCTCATTTGTACAATCCATCACATATCCATCCATTTTCACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTTCCAATTGAACGTGTATCTTCTCCCCTCTTTGTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24535</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>29076</contig_pos>
        <strand></strand>
        <context>taataaaaag[A/G]ttgaaattat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGTTTTACTCAAGTTTTTGCTCTAAAACGTGAAAATTTCTAATAAAAAG</left_flank>
        <right_flank>TTGAAATTATTGTCTGACTGGTAAAGAGCTTCAAAATGAGCCCAAACACG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATCTAAATTCCAAAATGTAGATCTTGAAAATTTCTTAATTTTAAGCTAAAAATCGCAAAGTTACAAGCCTAAGCTTGTTGTTCAGCACAACTTGACTTCCGAAATACACGCTCTTTTGAGAATAAACCGCTTTAAGGGATACGATTTTCCCGTATGTTTGGGTTTGGGTATACAAATACGGTTTCTGAAGAGGAGGGAAAGCTCTTTCTATTCCAAAAGGTAGGCATTGTTTGTTTTTTTCGGTGGAGGACATCAAGTCTTAAGGTCTCTGCGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCGGAACGGTCAAAAGAAGATGATGATGATGACAAGGAAAGCGGTGGTCTCTGTGTTTCTGTGTCAAAACAACACAGAAACAATTTTTCGAAATTTTCATCTAGCTAGAAAAAAATATTTTTTTTTTTGAAAAATTCCAATTTTCGTTTTACTCAAGTTTTTGCTCTAAAACGTGAAAATTTCTAATAAAAAGATTGAAATTATTGTCTGACTGGTAAAGAGCTTCAAAATGAGCCCAAACACGCCTAGGCTCTGCCCACTTTGTGTTTTGCGGCGCGTCGCGGTCGTGCGTCGCGTGTCTAGGCGAAATCTCAAAGTGGGCGGAGCCTAGTCGAGTTTGAGCTCATTTTGAAGCTTATAATGTGTTGAGTATGAATTTGATGATTTAATTCAAAAATTTAGAATCTGAAAGTTTGTTTTTTTTTTCGAAAATTTTGACTTTCACTTAACACATTTTCTGATTTTTTGGGTCCAATTTTTAGTATTCATCTTTTTCCTAGATTCAATAGAAACTAATTTTTAGAAATTCATAAAACATAAAAAGTTTTTTGATCTCTGAAAATTAAATGTTTGATCTACCAAAAAACCAAAAAAAAAAAAAGATTTTTGACCTCGAAAACTTTTTTGAAATCTTTCAAAATTCTTTTTTTTTTGAATTTTGTCATTTTTCCCATTTTTCCCATCATTTTTCCCC</canonical>
            <polymorphic>TTATCTAAATTCCAAAATGTAGATCTTGAAAATTTCTTAATTTTAAGCTAAAAATCGCAAAGTTACAAGCCTAAGCTTGTTGTTCAGCACAACTTGACTTCCGAAATACACGCTCTTTTGAGAATAAACCGCTTTAAGGGATACGATTTTCCCGTATGTTTGGGTTTGGGTATACAAATACGGTTTCTGAAGAGGAGGGAAAGCTCTTTCTATTCCAAAAGGTAGGCATTGTTTGTTTTTTTCGGTGGAGGACATCAAGTCTTAAGGTCTCTGCGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCGGAACGGTCAAAAGAAGATGATGATGATGACAAGGAAAGCGGTGGTCTCTGTGTTTCTGTGTCAAAACAACACAGAAACAATTTTTCGAAATTTTCATCTAGCTAGAAAAAAATATTTTTTTTTTTGAAAAATTCCAATTTTCGTTTTACTCAAGTTTTTGCTCTAAAACGTGAAAATTTCTAATAAAAAGRTTGAAATTATTGTCTGACTGGTAAAGAGCTTCAAAATGAGCCCAAACACGCCTAGGCTCTGCCCACTTTGTGTTTTGCGGCGCGTCGCGGTCGTGCGTCGCGTGTCTAGGCGAAATCTCAAAGTGGGCGGAGCCTAGTCGAGTTTGAGCTCATTTTGAAGCTTATAATGTGTTGAGTATGAATTTGATGATTTAATTCAAAAATTTAGAATCTGAAAGTTTGTTTTTTTTTTCGAAAATTTTGACTTTCACTTAACACATTTTCTGATTTTTTGGGTCCAATTTTTAGTATTCATCTTTTTCCTAGATTCAATAGAAACTAATTTTTAGAAATTCATAAAACATAAAAAGTTTTTTGATCTCTGAAAATTAAATGTTTGATCTACCAAAAAACCAAAAAAAAAAAAAGATTTTTGACCTCGAAAACTTTTTTGAAATCTTTCAAAATTCTTTTTTTTTTGAATTTTGTCATTTTTCCCATTTTTCCCATCATTTTTCCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCGAAATTTTCATCTAGC</pcr_primer_p1>
		<pcr_primer_p2>AAAATGTGTTAAGTGAAAGTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCGAAATTTTCATCTAGCTAGAAAAAAATATTTTTTTTTTTGAAAAATTCCAATTTTCGTTTTACTCAAGTTTTTGCTCTAAAACGTGAAAATTTCTAATAAAAAGATTGAAATTATTGTCTGACTGGTAAAGAGCTTCAAAATGAGCCCAAACACGCCTAGGCTCTGCCCACTTTGTGTTTTGCGGCGCGTCGCGGTCGTGCGTCGCGTGTCTAGGCGAAATCTCAAAGTGGGCGGAGCCTAGTCGAGTTTGAGCTCATTTTGAAGCTTATAATGTGTTGAGTATGAATTTGATGATTTAATTCAAAAATTTAGAATCTGAAAGTTTGTTTTTTTTTTCGAAAATTTTGACTTTCACTTAACACATTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCGAAATTTTCATCTAGCTAGAAAAAAATATTTTTTTTTTTGAAAAATTCCAATTTTCGTTTTACTCAAGTTTTTGCTCTAAAACGTGAAAATTTCTAATAAAAAGRTTGAAATTATTGTCTGACTGGTAAAGAGCTTCAAAATGAGCCCAAACACGCCTAGGCTCTGCCCACTTTGTGTTTTGCGGCGCGTCGCGGTCGTGCGTCGCGTGTCTAGGCGAAATCTCAAAGTGGGCGGAGCCTAGTCGAGTTTGAGCTCATTTTGAAGCTTATAATGTGTTGAGTATGAATTTGATGATTTAATTCAAAAATTTAGAATCTGAAAGTTTGTTTTTTTTTTCGAAAATTTTGACTTTCACTTAACACATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24536</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>29108</contig_pos>
        <strand></strand>
        <context>taaagagctt[C/T]aaaatgagcc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATTTCTAATAAAAAGATTGAAATTATTGTCTGACTGGTAAAGAGCTT</left_flank>
        <right_flank>AAAATGAGCCCAAACACGCCTAGGCTCTGCCCACTTTGTGTTTTGCGGCG</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTTAATTTTAAGCTAAAAATCGCAAAGTTACAAGCCTAAGCTTGTTGTTCAGCACAACTTGACTTCCGAAATACACGCTCTTTTGAGAATAAACCGCTTTAAGGGATACGATTTTCCCGTATGTTTGGGTTTGGGTATACAAATACGGTTTCTGAAGAGGAGGGAAAGCTCTTTCTATTCCAAAAGGTAGGCATTGTTTGTTTTTTTCGGTGGAGGACATCAAGTCTTAAGGTCTCTGCGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCGGAACGGTCAAAAGAAGATGATGATGATGACAAGGAAAGCGGTGGTCTCTGTGTTTCTGTGTCAAAACAACACAGAAACAATTTTTCGAAATTTTCATCTAGCTAGAAAAAAATATTTTTTTTTTTGAAAAATTCCAATTTTCGTTTTACTCAAGTTTTTGCTCTAAAACGTGAAAATTTCTAATAAAAAGATTGAAATTATTGTCTGACTGGTAAAGAGCTTCAAAATGAGCCCAAACACGCCTAGGCTCTGCCCACTTTGTGTTTTGCGGCGCGTCGCGGTCGTGCGTCGCGTGTCTAGGCGAAATCTCAAAGTGGGCGGAGCCTAGTCGAGTTTGAGCTCATTTTGAAGCTTATAATGTGTTGAGTATGAATTTGATGATTTAATTCAAAAATTTAGAATCTGAAAGTTTGTTTTTTTTTTCGAAAATTTTGACTTTCACTTAACACATTTTCTGATTTTTTGGGTCCAATTTTTAGTATTCATCTTTTTCCTAGATTCAATAGAAACTAATTTTTAGAAATTCATAAAACATAAAAAGTTTTTTGATCTCTGAAAATTAAATGTTTGATCTACCAAAAAACCAAAAAAAAAAAAAGATTTTTGACCTCGAAAACTTTTTTGAAATCTTTCAAAATTCTTTTTTTTTTGAATTTTGTCATTTTTCCCATTTTTCCCATCATTTTTCCCCAATTTATGACCGATTTTTCGAATTTTTGGACT</canonical>
            <polymorphic>TTTCTTAATTTTAAGCTAAAAATCGCAAAGTTACAAGCCTAAGCTTGTTGTTCAGCACAACTTGACTTCCGAAATACACGCTCTTTTGAGAATAAACCGCTTTAAGGGATACGATTTTCCCGTATGTTTGGGTTTGGGTATACAAATACGGTTTCTGAAGAGGAGGGAAAGCTCTTTCTATTCCAAAAGGTAGGCATTGTTTGTTTTTTTCGGTGGAGGACATCAAGTCTTAAGGTCTCTGCGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCGGAACGGTCAAAAGAAGATGATGATGATGACAAGGAAAGCGGTGGTCTCTGTGTTTCTGTGTCAAAACAACACAGAAACAATTTTTCGAAATTTTCATCTAGCTAGAAAAAAATATTTTTTTTTTTGAAAAATTCCAATTTTCGTTTTACTCAAGTTTTTGCTCTAAAACGTGAAAATTTCTAATAAAAAGATTGAAATTATTGTCTGACTGGTAAAGAGCTTYAAAATGAGCCCAAACACGCCTAGGCTCTGCCCACTTTGTGTTTTGCGGCGCGTCGCGGTCGTGCGTCGCGTGTCTAGGCGAAATCTCAAAGTGGGCGGAGCCTAGTCGAGTTTGAGCTCATTTTGAAGCTTATAATGTGTTGAGTATGAATTTGATGATTTAATTCAAAAATTTAGAATCTGAAAGTTTGTTTTTTTTTTCGAAAATTTTGACTTTCACTTAACACATTTTCTGATTTTTTGGGTCCAATTTTTAGTATTCATCTTTTTCCTAGATTCAATAGAAACTAATTTTTAGAAATTCATAAAACATAAAAAGTTTTTTGATCTCTGAAAATTAAATGTTTGATCTACCAAAAAACCAAAAAAAAAAAAAGATTTTTGACCTCGAAAACTTTTTTGAAATCTTTCAAAATTCTTTTTTTTTTGAATTTTGTCATTTTTCCCATTTTTCCCATCATTTTTCCCCAATTTATGACCGATTTTTCGAATTTTTGGACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCGAAATTTTCATCTAGC</pcr_primer_p1>
		<pcr_primer_p2>AAAATGTGTTAAGTGAAAGTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCGAAATTTTCATCTAGCTAGAAAAAAATATTTTTTTTTTTGAAAAATTCCAATTTTCGTTTTACTCAAGTTTTTGCTCTAAAACGTGAAAATTTCTAATAAAAAGATTGAAATTATTGTCTGACTGGTAAAGAGCTTCAAAATGAGCCCAAACACGCCTAGGCTCTGCCCACTTTGTGTTTTGCGGCGCGTCGCGGTCGTGCGTCGCGTGTCTAGGCGAAATCTCAAAGTGGGCGGAGCCTAGTCGAGTTTGAGCTCATTTTGAAGCTTATAATGTGTTGAGTATGAATTTGATGATTTAATTCAAAAATTTAGAATCTGAAAGTTTGTTTTTTTTTTCGAAAATTTTGACTTTCACTTAACACATTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCGAAATTTTCATCTAGCTAGAAAAAAATATTTTTTTTTTTGAAAAATTCCAATTTTCGTTTTACTCAAGTTTTTGCTCTAAAACGTGAAAATTTCTAATAAAAAGATTGAAATTATTGTCTGACTGGTAAAGAGCTTYAAAATGAGCCCAAACACGCCTAGGCTCTGCCCACTTTGTGTTTTGCGGCGCGTCGCGGTCGTGCGTCGCGTGTCTAGGCGAAATCTCAAAGTGGGCGGAGCCTAGTCGAGTTTGAGCTCATTTTGAAGCTTATAATGTGTTGAGTATGAATTTGATGATTTAATTCAAAAATTTAGAATCTGAAAGTTTGTTTTTTTTTTCGAAAATTTTGACTTTCACTTAACACATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24537</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>29136</contig_pos>
        <strand></strand>
        <context>gcctaggctc[T/C]gcccactttg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTGTCTGACTGGTAAAGAGCTTCAAAATGAGCCCAAACACGCCTAGGCTC</left_flank>
        <right_flank>GCCCACTTTGTGTTTTGCGGCGCGTCGCGGTCGTGCGTCGCGTGTCTAGG</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTACAAGCCTAAGCTTGTTGTTCAGCACAACTTGACTTCCGAAATACACGCTCTTTTGAGAATAAACCGCTTTAAGGGATACGATTTTCCCGTATGTTTGGGTTTGGGTATACAAATACGGTTTCTGAAGAGGAGGGAAAGCTCTTTCTATTCCAAAAGGTAGGCATTGTTTGTTTTTTTCGGTGGAGGACATCAAGTCTTAAGGTCTCTGCGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCGGAACGGTCAAAAGAAGATGATGATGATGACAAGGAAAGCGGTGGTCTCTGTGTTTCTGTGTCAAAACAACACAGAAACAATTTTTCGAAATTTTCATCTAGCTAGAAAAAAATATTTTTTTTTTTGAAAAATTCCAATTTTCGTTTTACTCAAGTTTTTGCTCTAAAACGTGAAAATTTCTAATAAAAAGATTGAAATTATTGTCTGACTGGTAAAGAGCTTCAAAATGAGCCCAAACACGCCTAGGCTCTGCCCACTTTGTGTTTTGCGGCGCGTCGCGGTCGTGCGTCGCGTGTCTAGGCGAAATCTCAAAGTGGGCGGAGCCTAGTCGAGTTTGAGCTCATTTTGAAGCTTATAATGTGTTGAGTATGAATTTGATGATTTAATTCAAAAATTTAGAATCTGAAAGTTTGTTTTTTTTTTCGAAAATTTTGACTTTCACTTAACACATTTTCTGATTTTTTGGGTCCAATTTTTAGTATTCATCTTTTTCCTAGATTCAATAGAAACTAATTTTTAGAAATTCATAAAACATAAAAAGTTTTTTGATCTCTGAAAATTAAATGTTTGATCTACCAAAAAACCAAAAAAAAAAAAAGATTTTTGACCTCGAAAACTTTTTTGAAATCTTTCAAAATTCTTTTTTTTTTGAATTTTGTCATTTTTCCCATTTTTCCCATCATTTTTCCCCAATTTATGACCGATTTTTCGAATTTTTGGACTTTTTTAGACTTCTTTAGTTTTCCGAATT</canonical>
            <polymorphic>AGTTACAAGCCTAAGCTTGTTGTTCAGCACAACTTGACTTCCGAAATACACGCTCTTTTGAGAATAAACCGCTTTAAGGGATACGATTTTCCCGTATGTTTGGGTTTGGGTATACAAATACGGTTTCTGAAGAGGAGGGAAAGCTCTTTCTATTCCAAAAGGTAGGCATTGTTTGTTTTTTTCGGTGGAGGACATCAAGTCTTAAGGTCTCTGCGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCGGAACGGTCAAAAGAAGATGATGATGATGACAAGGAAAGCGGTGGTCTCTGTGTTTCTGTGTCAAAACAACACAGAAACAATTTTTCGAAATTTTCATCTAGCTAGAAAAAAATATTTTTTTTTTTGAAAAATTCCAATTTTCGTTTTACTCAAGTTTTTGCTCTAAAACGTGAAAATTTCTAATAAAAAGATTGAAATTATTGTCTGACTGGTAAAGAGCTTCAAAATGAGCCCAAACACGCCTAGGCTCYGCCCACTTTGTGTTTTGCGGCGCGTCGCGGTCGTGCGTCGCGTGTCTAGGCGAAATCTCAAAGTGGGCGGAGCCTAGTCGAGTTTGAGCTCATTTTGAAGCTTATAATGTGTTGAGTATGAATTTGATGATTTAATTCAAAAATTTAGAATCTGAAAGTTTGTTTTTTTTTTCGAAAATTTTGACTTTCACTTAACACATTTTCTGATTTTTTGGGTCCAATTTTTAGTATTCATCTTTTTCCTAGATTCAATAGAAACTAATTTTTAGAAATTCATAAAACATAAAAAGTTTTTTGATCTCTGAAAATTAAATGTTTGATCTACCAAAAAACCAAAAAAAAAAAAAGATTTTTGACCTCGAAAACTTTTTTGAAATCTTTCAAAATTCTTTTTTTTTTGAATTTTGTCATTTTTCCCATTTTTCCCATCATTTTTCCCCAATTTATGACCGATTTTTCGAATTTTTGGACTTTTTTAGACTTCTTTAGTTTTCCGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCGAAATTTTCATCTAGC</pcr_primer_p1>
		<pcr_primer_p2>AAAATGTGTTAAGTGAAAGTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCGAAATTTTCATCTAGCTAGAAAAAAATATTTTTTTTTTTGAAAAATTCCAATTTTCGTTTTACTCAAGTTTTTGCTCTAAAACGTGAAAATTTCTAATAAAAAGATTGAAATTATTGTCTGACTGGTAAAGAGCTTCAAAATGAGCCCAAACACGCCTAGGCTCTGCCCACTTTGTGTTTTGCGGCGCGTCGCGGTCGTGCGTCGCGTGTCTAGGCGAAATCTCAAAGTGGGCGGAGCCTAGTCGAGTTTGAGCTCATTTTGAAGCTTATAATGTGTTGAGTATGAATTTGATGATTTAATTCAAAAATTTAGAATCTGAAAGTTTGTTTTTTTTTTCGAAAATTTTGACTTTCACTTAACACATTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCGAAATTTTCATCTAGCTAGAAAAAAATATTTTTTTTTTTGAAAAATTCCAATTTTCGTTTTACTCAAGTTTTTGCTCTAAAACGTGAAAATTTCTAATAAAAAGATTGAAATTATTGTCTGACTGGTAAAGAGCTTCAAAATGAGCCCAAACACGCCTAGGCTCYGCCCACTTTGTGTTTTGCGGCGCGTCGCGGTCGTGCGTCGCGTGTCTAGGCGAAATCTCAAAGTGGGCGGAGCCTAGTCGAGTTTGAGCTCATTTTGAAGCTTATAATGTGTTGAGTATGAATTTGATGATTTAATTCAAAAATTTAGAATCTGAAAGTTTGTTTTTTTTTTCGAAAATTTTGACTTTCACTTAACACATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24538</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>29202</contig_pos>
        <strand></strand>
        <context>tctcaaagtg[G/C]gcggagccta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TGCGGCGCGTCGCGGTCGTGCGTCGCGTGTCTAGGCGAAATCTCAAAGTG</left_flank>
        <right_flank>GCGGAGCCTAGTCGAGTTTGAGCTCATTTTGAAGCTTATAATGTGTTGAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCGCTTTAAGGGATACGATTTTCCCGTATGTTTGGGTTTGGGTATACAAATACGGTTTCTGAAGAGGAGGGAAAGCTCTTTCTATTCCAAAAGGTAGGCATTGTTTGTTTTTTTCGGTGGAGGACATCAAGTCTTAAGGTCTCTGCGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCGGAACGGTCAAAAGAAGATGATGATGATGACAAGGAAAGCGGTGGTCTCTGTGTTTCTGTGTCAAAACAACACAGAAACAATTTTTCGAAATTTTCATCTAGCTAGAAAAAAATATTTTTTTTTTTGAAAAATTCCAATTTTCGTTTTACTCAAGTTTTTGCTCTAAAACGTGAAAATTTCTAATAAAAAGATTGAAATTATTGTCTGACTGGTAAAGAGCTTCAAAATGAGCCCAAACACGCCTAGGCTCTGCCCACTTTGTGTTTTGCGGCGCGTCGCGGTCGTGCGTCGCGTGTCTAGGCGAAATCTCAAAGTGGGCGGAGCCTAGTCGAGTTTGAGCTCATTTTGAAGCTTATAATGTGTTGAGTATGAATTTGATGATTTAATTCAAAAATTTAGAATCTGAAAGTTTGTTTTTTTTTTCGAAAATTTTGACTTTCACTTAACACATTTTCTGATTTTTTGGGTCCAATTTTTAGTATTCATCTTTTTCCTAGATTCAATAGAAACTAATTTTTAGAAATTCATAAAACATAAAAAGTTTTTTGATCTCTGAAAATTAAATGTTTGATCTACCAAAAAACCAAAAAAAAAAAAAGATTTTTGACCTCGAAAACTTTTTTGAAATCTTTCAAAATTCTTTTTTTTTTGAATTTTGTCATTTTTCCCATTTTTCCCATCATTTTTCCCCAATTTATGACCGATTTTTCGAATTTTTGGACTTTTTTAGACTTCTTTAGTTTTCCGAATTTTCAGTGTTTTTTTCCGATTTTTTTTTCTAAAATTCAGAATTTCCGATATTAAAAAAAAACTTTTT</canonical>
            <polymorphic>AACCGCTTTAAGGGATACGATTTTCCCGTATGTTTGGGTTTGGGTATACAAATACGGTTTCTGAAGAGGAGGGAAAGCTCTTTCTATTCCAAAAGGTAGGCATTGTTTGTTTTTTTCGGTGGAGGACATCAAGTCTTAAGGTCTCTGCGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCGGAACGGTCAAAAGAAGATGATGATGATGACAAGGAAAGCGGTGGTCTCTGTGTTTCTGTGTCAAAACAACACAGAAACAATTTTTCGAAATTTTCATCTAGCTAGAAAAAAATATTTTTTTTTTTGAAAAATTCCAATTTTCGTTTTACTCAAGTTTTTGCTCTAAAACGTGAAAATTTCTAATAAAAAGATTGAAATTATTGTCTGACTGGTAAAGAGCTTCAAAATGAGCCCAAACACGCCTAGGCTCTGCCCACTTTGTGTTTTGCGGCGCGTCGCGGTCGTGCGTCGCGTGTCTAGGCGAAATCTCAAAGTGSGCGGAGCCTAGTCGAGTTTGAGCTCATTTTGAAGCTTATAATGTGTTGAGTATGAATTTGATGATTTAATTCAAAAATTTAGAATCTGAAAGTTTGTTTTTTTTTTCGAAAATTTTGACTTTCACTTAACACATTTTCTGATTTTTTGGGTCCAATTTTTAGTATTCATCTTTTTCCTAGATTCAATAGAAACTAATTTTTAGAAATTCATAAAACATAAAAAGTTTTTTGATCTCTGAAAATTAAATGTTTGATCTACCAAAAAACCAAAAAAAAAAAAAGATTTTTGACCTCGAAAACTTTTTTGAAATCTTTCAAAATTCTTTTTTTTTTGAATTTTGTCATTTTTCCCATTTTTCCCATCATTTTTCCCCAATTTATGACCGATTTTTCGAATTTTTGGACTTTTTTAGACTTCTTTAGTTTTCCGAATTTTCAGTGTTTTTTTCCGATTTTTTTTTCTAAAATTCAGAATTTCCGATATTAAAAAAAAACTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>500 497 3</canonical_bands>
                <polymorphic_bands>997 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCGAAATTTTCATCTAGC</pcr_primer_p1>
		<pcr_primer_p2>AAAATGTGTTAAGTGAAAGTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCGAAATTTTCATCTAGCTAGAAAAAAATATTTTTTTTTTTGAAAAATTCCAATTTTCGTTTTACTCAAGTTTTTGCTCTAAAACGTGAAAATTTCTAATAAAAAGATTGAAATTATTGTCTGACTGGTAAAGAGCTTCAAAATGAGCCCAAACACGCCTAGGCTCTGCCCACTTTGTGTTTTGCGGCGCGTCGCGGTCGTGCGTCGCGTGTCTAGGCGAAATCTCAAAGTGGGCGGAGCCTAGTCGAGTTTGAGCTCATTTTGAAGCTTATAATGTGTTGAGTATGAATTTGATGATTTAATTCAAAAATTTAGAATCTGAAAGTTTGTTTTTTTTTTCGAAAATTTTGACTTTCACTTAACACATTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCGAAATTTTCATCTAGCTAGAAAAAAATATTTTTTTTTTTGAAAAATTCCAATTTTCGTTTTACTCAAGTTTTTGCTCTAAAACGTGAAAATTTCTAATAAAAAGATTGAAATTATTGTCTGACTGGTAAAGAGCTTCAAAATGAGCCCAAACACGCCTAGGCTCTGCCCACTTTGTGTTTTGCGGCGCGTCGCGGTCGTGCGTCGCGTGTCTAGGCGAAATCTCAAAGTGSGCGGAGCCTAGTCGAGTTTGAGCTCATTTTGAAGCTTATAATGTGTTGAGTATGAATTTGATGATTTAATTCAAAAATTTAGAATCTGAAAGTTTGTTTTTTTTTTCGAAAATTTTGACTTTCACTTAACACATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24539</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>30112</contig_pos>
        <strand>+</strand>
        <context>aatttTTTCA[A/T]TGTTTCGCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTAAAATTGTTTAAACCTCATTTTTAACCGATTTTTCTCGAATTTTTTCA</left_flank>
        <right_flank>TGTTTCGCTATTTTTCTCAATAGAGCGCATTTTACACATTTCAACAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGACTTCTTTAGTTTTCCGAATTTTCAGTGTTTTTTTCCGATTTTTTTTTCTAAAATTCAGAATTTCCGATATTAAAAAAAAACTTTTTTTTAAATTCCTAAGCCTCATTAAAAAAACCTTAGCCTCAGTGAAATTCCTAAGCCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAAGCCTCAGTAAAAATTCCTAAGCCTCAGTAAAAATTCCTAAGCCTCAGTAAAAATTCCTAAGCCTCAGTAAAAAATTCCTAAGCCTCAGTAAAAACTTCCAAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATTCCTAAGCCTCAGTAAAAATTCCTAAGCCTCAGTGAAATTCCTTAGCCTCAGTGAAAATTCCTAAGCCTCAGTGAAATTCCTTAGCCTCAGTGAAAATTCCTAGGCCTCAGTAAAAACTTCCTAAGCCTCAGTAAAATTGTTTAAACCTCATTTTTAACCGATTTTTCTCGAATTTTTTCATTGTTTCGCTATTTTTCTCAATAGAGCGCATTTTACACATTTCAACAAAAAAAAGAAGAAAAGAGCCTTTATAGACGACACAAAACTTTCAAAAATGTGAGCAATTTTTGTCCCCTTTTCTTCTTGTTCTAGAGAGAGCATCCATTGTTCTTGCTGTGTCCACCACCCTCTTAACAATAATCTCAAGGGAATGGTTTTTTTTTTGGGGCTCAGAGGGAAAAATTTTTAGAAAGGAATTTTTTTGTCTAGGCTGTGTCCCATGTTTTTTTCTTGATTTTTTGGATAATTTTGTAAAAAAGAGTTTTGAGAAAATTCAACTTTTCTAGCTATTTTAGTACAAGTACCGTAAAACTTGTATTAGATCGCCACCCGAATCGTCAACTTTGAGCCCATTTATCTCATTTTTTGTGAGAGATATCAAAAAGTGATCAACTGATGAAGTGTTGCTGATATCATGATAAACATTTTATTAATTGACTACTTTTTGATATCTTTCAAGAG</canonical>
            <polymorphic>TAGACTTCTTTAGTTTTCCGAATTTTCAGTGTTTTTTTCCGATTTTTTTTTCTAAAATTCAGAATTTCCGATATTAAAAAAAAACTTTTTTTTAAATTCCTAAGCCTCATTAAAAAAACCTTAGCCTCAGTGAAATTCCTAAGCCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAAGCCTCAGTAAAAATTCCTAAGCCTCAGTAAAAATTCCTAAGCCTCAGTAAAAATTCCTAAGCCTCAGTAAAAAATTCCTAAGCCTCAGTAAAAACTTCCAAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATTCCTAAGCCTCAGTAAAAATTCCTAAGCCTCAGTGAAATTCCTTAGCCTCAGTGAAAATTCCTAAGCCTCAGTGAAATTCCTTAGCCTCAGTGAAAATTCCTAGGCCTCAGTAAAAACTTCCTAAGCCTCAGTAAAATTGTTTAAACCTCATTTTTAACCGATTTTTCTCGAATTTTTTCAWTGTTTCGCTATTTTTCTCAATAGAGCGCATTTTACACATTTCAACAAAAAAAAGAAGAAAAGAGCCTTTATAGACGACACAAAACTTTCAAAAATGTGAGCAATTTTTGTCCCCTTTTCTTCTTGTTCTAGAGAGAGCATCCATTGTTCTTGCTGTGTCCACCACCCTCTTAACAATAATCTCAAGGGAATGGTTTTTTTTTTGGGGCTCAGAGGGAAAAATTTTTAGAAAGGAATTTTTTTGTCTAGGCTGTGTCCCATGTTTTTTTCTTGATTTTTTGGATAATTTTGTAAAAAAGAGTTTTGAGAAAATTCAACTTTTCTAGCTATTTTAGTACAAGTACCGTAAAACTTGTATTAGATCGCCACCCGAATCGTCAACTTTGAGCCCATTTATCTCATTTTTTGTGAGAGATATCAAAAAGTGATCAACTGATGAAGTGTTGCTGATATCATGATAAACATTTTATTAATTGACTACTTTTTGATATCTTTCAAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCGAATTTTCAGTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATAAAGGCTCTTTTCTTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>555</pcr_amplicon_size>
		<canonical_amplicon>TCCGAATTTTCAGTGTTTTTTTCCGATTTTTTTTTCTAAAATTCAGAATTTCCGATATTAAAAAAAAACTTTTTTTTAAATTCCTAAGCCTCATTAAAAAAACCTTAGCCTCAGTGAAATTCCTAAGCCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAAGCCTCAGTAAAAATTCCTAAGCCTCAGTAAAAATTCCTAAGCCTCAGTAAAAATTCCTAAGCCTCAGTAAAAAATTCCTAAGCCTCAGTAAAAACTTCCAAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATTCCTAAGCCTCAGTAAAAATTCCTAAGCCTCAGTGAAATTCCTTAGCCTCAGTGAAAATTCCTAAGCCTCAGTGAAATTCCTTAGCCTCAGTGAAAATTCCTAGGCCTCAGTAAAAACTTCCTAAGCCTCAGTAAAATTGTTTAAACCTCATTTTTAACCGATTTTTCTCGAATTTTTTCATTGTTTCGCTATTTTTCTCAATAGAGCGCATTTTACACATTTCAACAAAAAAAAGAAGAAAAGAGCCTTTAT</canonical_amplicon>
		<polymorphic_amplicon>TCCGAATTTTCAGTGTTTTTTTCCGATTTTTTTTTCTAAAATTCAGAATTTCCGATATTAAAAAAAAACTTTTTTTTAAATTCCTAAGCCTCATTAAAAAAACCTTAGCCTCAGTGAAATTCCTAAGCCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAAGCCTCAGTAAAAATTCCTAAGCCTCAGTAAAAATTCCTAAGCCTCAGTAAAAATTCCTAAGCCTCAGTAAAAAATTCCTAAGCCTCAGTAAAAACTTCCAAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATTCCTAAGCCTCAGTAAAAATTCCTAAGCCTCAGTGAAATTCCTTAGCCTCAGTGAAAATTCCTAAGCCTCAGTGAAATTCCTTAGCCTCAGTGAAAATTCCTAGGCCTCAGTAAAAACTTCCTAAGCCTCAGTAAAATTGTTTAAACCTCATTTTTAACCGATTTTTCTCGAATTTTTTCAWTGTTTCGCTATTTTTCTCAATAGAGCGCATTTTACACATTTCAACAAAAAAAAGAAGAAAAGAGCCTTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24540</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>31682</contig_pos>
        <strand>+</strand>
        <context>GGGGACCCCC[C/T]YGACTttctt</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATTTTTCGAATCGAATTGTGATTCTTCGATTGGAAGGAAGGGGACCCCC</left_flank>
        <right_flank>TGACTTTCTTCTTCTTCTTCTTCTTTTCCGATGTCCTTGGAGATTCCTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGGCCGCCTAGAAGCTGAGATATAGCTCTTCAAATTTTTGGAGGCTAGAGACGCCAGACGACGAGACATGCTGCGTCTCTAGCCTTCAAAACTTTAAATCACTATAACTTGGCTTCTAGAAGAGCTAGAAACTCGATTCTTGAACTTGATTTTCCACATTTTAATGCACCAAAAGTAGACATTTCTTCATTTTCTGTTTATCCAAATGTCCGGATGTCCACGCCAAAAGTTGAAACACTTGTTAGAAGAGGGGGGGGGGGGTGTTCCCACTCTGCTAACTCATTGTATCTCTGTTTCTTTCTCTGCGTCTCTCTCCCTCTCCCTCTCTCTTCTCATTACTTTACACACACCTCCCCAAACCCTTCTTCTTCTTCTTCTTCTCCGCTCGATAAAATCACTTGTGCTGTCTGCGTCTCTCACCCCCTCTACACTCTCTCGCTGCCTCTACATTTTTCGAATCGAATTGTGATTCTTCGATTGGAAGGAAGGGGACCCCCTTGACTTTCTTCTTCTTCTTCTTCTTTTCCGATGTCCTTGGAGATTCCTTTCTTTTTGTCTCTCTGCGTCTCTCACTCTCTCACTCTCTCTTACTGTGCCTGTGGTATAGGTATTGTATAGACACTATTTGTGTGTTCTTTTCCATATTTCGAAACTTTTTTTGTTTCTTTTTTTATTTTTTTTTTGAATATAAGCTCCGCCCACTTTTAGGGTTCCTGAAGAATCGATCCCTAGAGTTAAGATTTTTGAAATTTGTTGAAATTTCGAAATTTCTGAATTTCTGAATTTCCGAGTTTCCGAATTTCTGAATTTTTGGAATTTCTGAATTTCTGAATTTCTGAATTTCCAAATTTCTGAATTTCTGAATTTTCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGGTTTTTCTGAATTTCTGAATTTCTGAATTTTTGGAATTTCTGAGTTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTC</canonical>
            <polymorphic>CTAGGCCGCCTAGAAGCTGAGATATAGCTCTTCAAATTTTTGGAGGCTAGAGACGCCAGACGACGAGACATGCTGCGTCTCTAGCCTTCAAAACTTTAAATCACTATAACTTGGCTTCTAGAAGAGCTAGAAACTCGATTCTTGAACTTGATTTTCCACATTTTAATGCACCAAAAGTAGACATTTCTTCATTTTCTGTTTATCCAAATGTCCGGATGTCCACGCCAAAAGTTGAAACACTTGTTAGAAGAGGGGGGGGGGGGTGTTCCCACTCTGCTAACTCATTGTATCTCTGTTTCTTTCTCTGCGTCTCTCTCCCTCTCCCTCTCTCTTCTCATTACTTTACACACACCTCCCCAAACCCTTCTTCTTCTTCTTCTTCTCCGCTCGATAAAATCACTTGTGCTGTCTGCGTCTCTCACCCCCTCTACACTCTCTCGCTGCCTCTACATTTTTCGAATCGAATTGTGATTCTTCGATTGGAAGGAAGGGGACCCCCYTGACTTTCTTCTTCTTCTTCTTCTTTTCCGATGTCCTTGGAGATTCCTTTCTTTTTGTCTCTCTGCGTCTCTCACTCTCTCACTCTCTCTTACTGTGCCTGTGGTATAGGTATTGTATAGACACTATTTGTGTGTTCTTTTCCATATTTCGAAACTTTTTTTGTTTCTTTTTTTATTTTTTTTTTGAATATAAGCTCCGCCCACTTTTAGGGTTCCTGAAGAATCGATCCCTAGAGTTAAGATTTTTGAAATTTGTTGAAATTTCGAAATTTCTGAATTTCTGAATTTCCGAGTTTCCGAATTTCTGAATTTTTGGAATTTCTGAATTTCTGAATTTCTGAATTTCCAAATTTCTGAATTTCTGAATTTTCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGGTTTTTCTGAATTTCTGAATTTCTGAATTTTTGGAATTTCTGAGTTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAAATCACTTGTGCTGTCTG</pcr_primer_p1>
		<pcr_primer_p2>ATACCTATACCACAGGCACAGTA</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>ATAAAATCACTTGTGCTGTCTGCGTCTCTCACCCCCTCTACACTCTCTCGCTGCCTCTACATTTTTCGAATCGAATTGTGATTCTTCGATTGGAAGGAAGGGGACCCCCTTGACTTTCTTCTTCTTCTTCTTCTTTTCCGATGTCCTTGGAGATTCCTTTCTTTTTGTCTCTCTGCGTCTCTCACTCTCTCACTCTCTCTTACTGTGCCTGTGGTATAGGTAT</canonical_amplicon>
		<polymorphic_amplicon>ATAAAATCACTTGTGCTGTCTGCGTCTCTCACCCCCTCTACACTCTCTCGCTGCCTCTACATTTTTCGAATCGAATTGTGATTCTTCGATTGGAAGGAAGGGGACCCCCYTGACTTTCTTCTTCTTCTTCTTCTTTTCCGATGTCCTTGGAGATTCCTTTCTTTTTGTCTCTCTGCGTCTCTCACTCTCTCACTCTCTCTTACTGTGCCTGTGGTATAGGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24541</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>31683</contig_pos>
        <strand>+</strand>
        <context>GGGACCCCCY[C/T]GACTttcttc</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTTCGAATCGAATTGTGATTCTTCGATTGGAAGGAAGGGGACCCCCT</left_flank>
        <right_flank>GACTTTCTTCTTCTTCTTCTTCTTTTCCGATGTCCTTGGAGATTCCTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGCCGCCTAGAAGCTGAGATATAGCTCTTCAAATTTTTGGAGGCTAGAGACGCCAGACGACGAGACATGCTGCGTCTCTAGCCTTCAAAACTTTAAATCACTATAACTTGGCTTCTAGAAGAGCTAGAAACTCGATTCTTGAACTTGATTTTCCACATTTTAATGCACCAAAAGTAGACATTTCTTCATTTTCTGTTTATCCAAATGTCCGGATGTCCACGCCAAAAGTTGAAACACTTGTTAGAAGAGGGGGGGGGGGGTGTTCCCACTCTGCTAACTCATTGTATCTCTGTTTCTTTCTCTGCGTCTCTCTCCCTCTCCCTCTCTCTTCTCATTACTTTACACACACCTCCCCAAACCCTTCTTCTTCTTCTTCTTCTCCGCTCGATAAAATCACTTGTGCTGTCTGCGTCTCTCACCCCCTCTACACTCTCTCGCTGCCTCTACATTTTTCGAATCGAATTGTGATTCTTCGATTGGAAGGAAGGGGACCCCCTTGACTTTCTTCTTCTTCTTCTTCTTTTCCGATGTCCTTGGAGATTCCTTTCTTTTTGTCTCTCTGCGTCTCTCACTCTCTCACTCTCTCTTACTGTGCCTGTGGTATAGGTATTGTATAGACACTATTTGTGTGTTCTTTTCCATATTTCGAAACTTTTTTTGTTTCTTTTTTTATTTTTTTTTTGAATATAAGCTCCGCCCACTTTTAGGGTTCCTGAAGAATCGATCCCTAGAGTTAAGATTTTTGAAATTTGTTGAAATTTCGAAATTTCTGAATTTCTGAATTTCCGAGTTTCCGAATTTCTGAATTTTTGGAATTTCTGAATTTCTGAATTTCTGAATTTCCAAATTTCTGAATTTCTGAATTTTCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGGTTTTTCTGAATTTCTGAATTTCTGAATTTTTGGAATTTCTGAGTTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCT</canonical>
            <polymorphic>TAGGCCGCCTAGAAGCTGAGATATAGCTCTTCAAATTTTTGGAGGCTAGAGACGCCAGACGACGAGACATGCTGCGTCTCTAGCCTTCAAAACTTTAAATCACTATAACTTGGCTTCTAGAAGAGCTAGAAACTCGATTCTTGAACTTGATTTTCCACATTTTAATGCACCAAAAGTAGACATTTCTTCATTTTCTGTTTATCCAAATGTCCGGATGTCCACGCCAAAAGTTGAAACACTTGTTAGAAGAGGGGGGGGGGGGTGTTCCCACTCTGCTAACTCATTGTATCTCTGTTTCTTTCTCTGCGTCTCTCTCCCTCTCCCTCTCTCTTCTCATTACTTTACACACACCTCCCCAAACCCTTCTTCTTCTTCTTCTTCTCCGCTCGATAAAATCACTTGTGCTGTCTGCGTCTCTCACCCCCTCTACACTCTCTCGCTGCCTCTACATTTTTCGAATCGAATTGTGATTCTTCGATTGGAAGGAAGGGGACCCCCTYGACTTTCTTCTTCTTCTTCTTCTTTTCCGATGTCCTTGGAGATTCCTTTCTTTTTGTCTCTCTGCGTCTCTCACTCTCTCACTCTCTCTTACTGTGCCTGTGGTATAGGTATTGTATAGACACTATTTGTGTGTTCTTTTCCATATTTCGAAACTTTTTTTGTTTCTTTTTTTATTTTTTTTTTGAATATAAGCTCCGCCCACTTTTAGGGTTCCTGAAGAATCGATCCCTAGAGTTAAGATTTTTGAAATTTGTTGAAATTTCGAAATTTCTGAATTTCTGAATTTCCGAGTTTCCGAATTTCTGAATTTTTGGAATTTCTGAATTTCTGAATTTCTGAATTTCCAAATTTCTGAATTTCTGAATTTTCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGGTTTTTCTGAATTTCTGAATTTCTGAATTTTTGGAATTTCTGAGTTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAAATCACTTGTGCTGTCTG</pcr_primer_p1>
		<pcr_primer_p2>ATACCTATACCACAGGCACAGTA</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>ATAAAATCACTTGTGCTGTCTGCGTCTCTCACCCCCTCTACACTCTCTCGCTGCCTCTACATTTTTCGAATCGAATTGTGATTCTTCGATTGGAAGGAAGGGGACCCCCTTGACTTTCTTCTTCTTCTTCTTCTTTTCCGATGTCCTTGGAGATTCCTTTCTTTTTGTCTCTCTGCGTCTCTCACTCTCTCACTCTCTCTTACTGTGCCTGTGGTATAGGTAT</canonical_amplicon>
		<polymorphic_amplicon>ATAAAATCACTTGTGCTGTCTGCGTCTCTCACCCCCTCTACACTCTCTCGCTGCCTCTACATTTTTCGAATCGAATTGTGATTCTTCGATTGGAAGGAAGGGGACCCCCTYGACTTTCTTCTTCTTCTTCTTCTTTTCCGATGTCCTTGGAGATTCCTTTCTTTTTGTCTCTCTGCGTCTCTCACTCTCTCACTCTCTCTTACTGTGCCTGTGGTATAGGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24542</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>44717</contig_pos>
        <strand>+</strand>
        <context>TACAAACTAC[A/T]AAAAAAATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTACAGTAAGACAGTAGACTACAAAGACTATAAGTTGACTACAAACTAC</left_flank>
        <right_flank>AAAAAAATTGGAGAAAAAATTACCATAAATGGGCTTTTTTGACCGATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTAAAACTACTACAGTAATCCTGGAAAAATGGGTGGAGCCTAACCAAGTTTGACCTTTTTTTTAAATTAATTTTTGGCTCTAAAATTCAAAATTTCCAGGTTCCAAACTCCCACTGGCCACCACAAATTTTTCATTCTACGATTGTAATCGATACACGAGTTGCTCGACGTGCTCGGCGAGCCAATTTCCATGTGATTGGTGTCTGGAATCGAATGAGTGTGTTGCCGGGAAACTAACCGAAGACAAGTGTCGAAAACAACACATTGTTAATGGTCTTAATGTGAGTTTAGCTACAAAGACTACAAAAACTACAAAAACTACAAACTATAAATTTTCCAGCGTGACGGAAGCTCGATTCGAAAAGGACCCAGCAAGTGTCCCCATATCGTAGCGCCCGTGTCGAAAATGTCGGTGGCGACGGGAGAACGAAGGAATATTAGTGTGAAGGTACAGTAAGACAGTAGACTACAAAGACTATAAGTTGACTACAAACTACAAAAAAAATTGGAGAAAAAATTACCATAAATGGGCTTTTTTGACCGATTTTAGCCGAATTCTAGTCAAACTTTCGTAAATTTGCAATTTTACAGTAATCCTAACTAGACTACAAACTACACTTTCAACAATAAACTACATTTTTTGCAGGTCGAAAATGTGGACCCGTCGTTTATGGGCGATTTCAAGTGTGAATTCCGATATGGTACAGTAACCCATGAGAAAATTGCGATGCGAACGTCGGAAGATACGATAACGTAAGTCGAAAATTTTGAATTTGAGACGCAAAATTCGAATTTCGTGCAAAAAATCCTTTAAAAGGAGCCCAAATTTGGTTAGGTTTCTCCGCCCACGTTTAAGCTCCGCCCACTAGTAGGAAGTGGGCGTGGCCTAGTCCTTTTTTGAGATTATTTCTCGTTTTTTGAATGATTCCAGAGCTTTTAGCTCATCAAGAGCTTTGAAATGAACCCAGTCACTACTATACTCCGCGCACTTTGATTTT</canonical>
            <polymorphic>ACCTAAAACTACTACAGTAATCCTGGAAAAATGGGTGGAGCCTAACCAAGTTTGACCTTTTTTTTAAATTAATTTTTGGCTCTAAAATTCAAAATTTCCAGGTTCCAAACTCCCACTGGCCACCACAAATTTTTCATTCTACGATTGTAATCGATACACGAGTTGCTCGACGTGCTCGGCGAGCCAATTTCCATGTGATTGGTGTCTGGAATCGAATGAGTGTGTTGCCGGGAAACTAACCGAAGACAAGTGTCGAAAACAACACATTGTTAATGGTCTTAATGTGAGTTTAGCTACAAAGACTACAAAAACTACAAAAACTACAAACTATAAATTTTCCAGCGTGACGGAAGCTCGATTCGAAAAGGACCCAGCAAGTGTCCCCATATCGTAGCGCCCGTGTCGAAAATGTCGGTGGCGACGGGAGAACGAAGGAATATTAGTGTGAAGGTACAGTAAGACAGTAGACTACAAAGACTATAAGTTGACTACAAACTACWAAAAAAATTGGAGAAAAAATTACCATAAATGGGCTTTTTTGACCGATTTTAGCCGAATTCTAGTCAAACTTTCGTAAATTTGCAATTTTACAGTAATCCTAACTAGACTACAAACTACACTTTCAACAATAAACTACATTTTTTGCAGGTCGAAAATGTGGACCCGTCGTTTATGGGCGATTTCAAGTGTGAATTCCGATATGGTACAGTAACCCATGAGAAAATTGCGATGCGAACGTCGGAAGATACGATAACGTAAGTCGAAAATTTTGAATTTGAGACGCAAAATTCGAATTTCGTGCAAAAAATCCTTTAAAAGGAGCCCAAATTTGGTTAGGTTTCTCCGCCCACGTTTAAGCTCCGCCCACTAGTAGGAAGTGGGCGTGGCCTAGTCCTTTTTTGAGATTATTTCTCGTTTTTTGAATGATTCCAGAGCTTTTAGCTCATCAAGAGCTTTGAAATGAACCCAGTCACTACTATACTCCGCGCACTTTGATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTATAAATTTTCCAGCGTGAC</pcr_primer_p1>
		<pcr_primer_p2>AGTTTGACTAGAATTCGGCTAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACTATAAATTTTCCAGCGTGACGGAAGCTCGATTCGAAAAGGACCCAGCAAGTGTCCCCATATCGTAGCGCCCGTGTCGAAAATGTCGGTGGCGACGGGAGAACGAAGGAATATTAGTGTGAAGGTACAGTAAGACAGTAGACTACAAAGACTATAAGTTGACTACAAACTACAAAAAAAATTGGAGAAAAAATTACCATAAATGGGCTTTTTTGACCGATTTTAGCCGAATTCTAGTCAAACT</canonical_amplicon>
		<polymorphic_amplicon>ACTATAAATTTTCCAGCGTGACGGAAGCTCGATTCGAAAAGGACCCAGCAAGTGTCCCCATATCGTAGCGCCCGTGTCGAAAATGTCGGTGGCGACGGGAGAACGAAGGAATATTAGTGTGAAGGTACAGTAAGACAGTAGACTACAAAGACTATAAGTTGACTACAAACTACWAAAAAAATTGGAGAAAAAATTACCATAAATGGGCTTTTTTGACCGATTTTAGCCGAATTCTAGTCAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24543</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>44753</contig_pos>
        <strand></strand>
        <context>TAAATGGGCT[T/A]TTTTGACCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGACTACAAACTACAAAAAAAATTGGAGAAAAAATTACCATAAATGGGCT</left_flank>
        <right_flank>TTTTGACCGATTTTAGCCGAATTCTAGTCAAACTTTCGTAAATTTGCAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGCCTAACCAAGTTTGACCTTTTTTTTAAATTAATTTTTGGCTCTAAAATTCAAAATTTCCAGGTTCCAAACTCCCACTGGCCACCACAAATTTTTCATTCTACGATTGTAATCGATACACGAGTTGCTCGACGTGCTCGGCGAGCCAATTTCCATGTGATTGGTGTCTGGAATCGAATGAGTGTGTTGCCGGGAAACTAACCGAAGACAAGTGTCGAAAACAACACATTGTTAATGGTCTTAATGTGAGTTTAGCTACAAAGACTACAAAAACTACAAAAACTACAAACTATAAATTTTCCAGCGTGACGGAAGCTCGATTCGAAAAGGACCCAGCAAGTGTCCCCATATCGTAGCGCCCGTGTCGAAAATGTCGGTGGCGACGGGAGAACGAAGGAATATTAGTGTGAAGGTACAGTAAGACAGTAGACTACAAAGACTATAAGTTGACTACAAACTACAAAAAAAATTGGAGAAAAAATTACCATAAATGGGCTTTTTTGACCGATTTTAGCCGAATTCTAGTCAAACTTTCGTAAATTTGCAATTTTACAGTAATCCTAACTAGACTACAAACTACACTTTCAACAATAAACTACATTTTTTGCAGGTCGAAAATGTGGACCCGTCGTTTATGGGCGATTTCAAGTGTGAATTCCGATATGGTACAGTAACCCATGAGAAAATTGCGATGCGAACGTCGGAAGATACGATAACGTAAGTCGAAAATTTTGAATTTGAGACGCAAAATTCGAATTTCGTGCAAAAAATCCTTTAAAAGGAGCCCAAATTTGGTTAGGTTTCTCCGCCCACGTTTAAGCTCCGCCCACTAGTAGGAAGTGGGCGTGGCCTAGTCCTTTTTTGAGATTATTTCTCGTTTTTTGAATGATTCCAGAGCTTTTAGCTCATCAAGAGCTTTGAAATGAACCCAGTCACTACTATACTCCGCGCACTTTGATTTTTTGGACGCGTCGCGGTCGTGCGTCGCGTGTCTGGTG</canonical>
            <polymorphic>GGAGCCTAACCAAGTTTGACCTTTTTTTTAAATTAATTTTTGGCTCTAAAATTCAAAATTTCCAGGTTCCAAACTCCCACTGGCCACCACAAATTTTTCATTCTACGATTGTAATCGATACACGAGTTGCTCGACGTGCTCGGCGAGCCAATTTCCATGTGATTGGTGTCTGGAATCGAATGAGTGTGTTGCCGGGAAACTAACCGAAGACAAGTGTCGAAAACAACACATTGTTAATGGTCTTAATGTGAGTTTAGCTACAAAGACTACAAAAACTACAAAAACTACAAACTATAAATTTTCCAGCGTGACGGAAGCTCGATTCGAAAAGGACCCAGCAAGTGTCCCCATATCGTAGCGCCCGTGTCGAAAATGTCGGTGGCGACGGGAGAACGAAGGAATATTAGTGTGAAGGTACAGTAAGACAGTAGACTACAAAGACTATAAGTTGACTACAAACTACAAAAAAAATTGGAGAAAAAATTACCATAAATGGGCTWTTTTGACCGATTTTAGCCGAATTCTAGTCAAACTTTCGTAAATTTGCAATTTTACAGTAATCCTAACTAGACTACAAACTACACTTTCAACAATAAACTACATTTTTTGCAGGTCGAAAATGTGGACCCGTCGTTTATGGGCGATTTCAAGTGTGAATTCCGATATGGTACAGTAACCCATGAGAAAATTGCGATGCGAACGTCGGAAGATACGATAACGTAAGTCGAAAATTTTGAATTTGAGACGCAAAATTCGAATTTCGTGCAAAAAATCCTTTAAAAGGAGCCCAAATTTGGTTAGGTTTCTCCGCCCACGTTTAAGCTCCGCCCACTAGTAGGAAGTGGGCGTGGCCTAGTCCTTTTTTGAGATTATTTCTCGTTTTTTGAATGATTCCAGAGCTTTTAGCTCATCAAGAGCTTTGAAATGAACCCAGTCACTACTATACTCCGCGCACTTTGATTTTTTGGACGCGTCGCGGTCGTGCGTCGCGTGTCTGGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGTGTCCCCATATCGTAG</pcr_primer_p1>
		<pcr_primer_p2>TTGTTGAAAGTGTAGTTTGTAGTCT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CAAGTGTCCCCATATCGTAGCGCCCGTGTCGAAAATGTCGGTGGCGACGGGAGAACGAAGGAATATTAGTGTGAAGGTACAGTAAGACAGTAGACTACAAAGACTATAAGTTGACTACAAACTACAAAAAAAATTGGAGAAAAAATTACCATAAATGGGCTTTTTTGACCGATTTTAGCCGAATTCTAGTCAAACTTTCGTAAATTTGCAATTTTACAGTAATCCTAACTAGACTACAAACTACACTTTCAACAA</canonical_amplicon>
		<polymorphic_amplicon>CAAGTGTCCCCATATCGTAGCGCCCGTGTCGAAAATGTCGGTGGCGACGGGAGAACGAAGGAATATTAGTGTGAAGGTACAGTAAGACAGTAGACTACAAAGACTATAAGTTGACTACAAACTACAAAAAAAATTGGAGAAAAAATTACCATAAATGGGCTWTTTTGACCGATTTTAGCCGAATTCTAGTCAAACTTTCGTAAATTTGCAATTTTACAGTAATCCTAACTAGACTACAAACTACACTTTCAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24544</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>44854</contig_pos>
        <strand>+</strand>
        <context>CAATAAACTA[C/G]ATTTTTTGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTACAGTAATCCTAACTAGACTACAAACTACACTTTCAACAATAAACTA</left_flank>
        <right_flank>ATTTTTTGCAGGTCGAAAATGTGGACCCGTCGTTTATGGGCGATTTCAAG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTACGATTGTAATCGATACACGAGTTGCTCGACGTGCTCGGCGAGCCAATTTCCATGTGATTGGTGTCTGGAATCGAATGAGTGTGTTGCCGGGAAACTAACCGAAGACAAGTGTCGAAAACAACACATTGTTAATGGTCTTAATGTGAGTTTAGCTACAAAGACTACAAAAACTACAAAAACTACAAACTATAAATTTTCCAGCGTGACGGAAGCTCGATTCGAAAAGGACCCAGCAAGTGTCCCCATATCGTAGCGCCCGTGTCGAAAATGTCGGTGGCGACGGGAGAACGAAGGAATATTAGTGTGAAGGTACAGTAAGACAGTAGACTACAAAGACTATAAGTTGACTACAAACTACAAAAAAAATTGGAGAAAAAATTACCATAAATGGGCTTTTTTGACCGATTTTAGCCGAATTCTAGTCAAACTTTCGTAAATTTGCAATTTTACAGTAATCCTAACTAGACTACAAACTACACTTTCAACAATAAACTACATTTTTTGCAGGTCGAAAATGTGGACCCGTCGTTTATGGGCGATTTCAAGTGTGAATTCCGATATGGTACAGTAACCCATGAGAAAATTGCGATGCGAACGTCGGAAGATACGATAACGTAAGTCGAAAATTTTGAATTTGAGACGCAAAATTCGAATTTCGTGCAAAAAATCCTTTAAAAGGAGCCCAAATTTGGTTAGGTTTCTCCGCCCACGTTTAAGCTCCGCCCACTAGTAGGAAGTGGGCGTGGCCTAGTCCTTTTTTGAGATTATTTCTCGTTTTTTGAATGATTCCAGAGCTTTTAGCTCATCAAGAGCTTTGAAATGAACCCAGTCACTACTATACTCCGCGCACTTTGATTTTTTGGACGCGTCGCGGTCGTGCGTCGCGTGTCTGGTGGGGAAATTTCAAAGTGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTGAAGCTCTTAATGAGCTAAACAAGAAAAATACATCAACCTTCAGAAAATTTCAG</canonical>
            <polymorphic>TCTACGATTGTAATCGATACACGAGTTGCTCGACGTGCTCGGCGAGCCAATTTCCATGTGATTGGTGTCTGGAATCGAATGAGTGTGTTGCCGGGAAACTAACCGAAGACAAGTGTCGAAAACAACACATTGTTAATGGTCTTAATGTGAGTTTAGCTACAAAGACTACAAAAACTACAAAAACTACAAACTATAAATTTTCCAGCGTGACGGAAGCTCGATTCGAAAAGGACCCAGCAAGTGTCCCCATATCGTAGCGCCCGTGTCGAAAATGTCGGTGGCGACGGGAGAACGAAGGAATATTAGTGTGAAGGTACAGTAAGACAGTAGACTACAAAGACTATAAGTTGACTACAAACTACAAAAAAAATTGGAGAAAAAATTACCATAAATGGGCTTTTTTGACCGATTTTAGCCGAATTCTAGTCAAACTTTCGTAAATTTGCAATTTTACAGTAATCCTAACTAGACTACAAACTACACTTTCAACAATAAACTASATTTTTTGCAGGTCGAAAATGTGGACCCGTCGTTTATGGGCGATTTCAAGTGTGAATTCCGATATGGTACAGTAACCCATGAGAAAATTGCGATGCGAACGTCGGAAGATACGATAACGTAAGTCGAAAATTTTGAATTTGAGACGCAAAATTCGAATTTCGTGCAAAAAATCCTTTAAAAGGAGCCCAAATTTGGTTAGGTTTCTCCGCCCACGTTTAAGCTCCGCCCACTAGTAGGAAGTGGGCGTGGCCTAGTCCTTTTTTGAGATTATTTCTCGTTTTTTGAATGATTCCAGAGCTTTTAGCTCATCAAGAGCTTTGAAATGAACCCAGTCACTACTATACTCCGCGCACTTTGATTTTTTGGACGCGTCGCGGTCGTGCGTCGCGTGTCTGGTGGGGAAATTTCAAAGTGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTGAAGCTCTTAATGAGCTAAACAAGAAAAATACATCAACCTTCAGAAAATTTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTAGCCGAATTCTAGTCA</pcr_primer_p1>
		<pcr_primer_p2>TCAAAATTTTCGACTTACGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>GATTTTAGCCGAATTCTAGTCAAACTTTCGTAAATTTGCAATTTTACAGTAATCCTAACTAGACTACAAACTACACTTTCAACAATAAACTACATTTTTTGCAGGTCGAAAATGTGGACCCGTCGTTTATGGGCGATTTCAAGTGTGAATTCCGATATGGTACAGTAACCCATGAGAAAATTGCGATGCGAACGTCGGAAGATACGATAACGTAAGTCGAAAATTTTGA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTAGCCGAATTCTAGTCAAACTTTCGTAAATTTGCAATTTTACAGTAATCCTAACTAGACTACAAACTACACTTTCAACAATAAACTASATTTTTTGCAGGTCGAAAATGTGGACCCGTCGTTTATGGGCGATTTCAAGTGTGAATTCCGATATGGTACAGTAACCCATGAGAAAATTGCGATGCGAACGTCGGAAGATACGATAACGTAAGTCGAAAATTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24545</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>44961</contig_pos>
        <strand>+</strand>
        <context>GAACGTCGGA[A/T]GATACGATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCCGATATGGTACAGTAACCCATGAGAAAATTGCGATGCGAACGTCGGA</left_flank>
        <right_flank>GATACGATAACGTAAGTCGAAAATTTTGAATTTGAGACGCAAAATTCGAA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACAAGTGTCGAAAACAACACATTGTTAATGGTCTTAATGTGAGTTTAGCTACAAAGACTACAAAAACTACAAAAACTACAAACTATAAATTTTCCAGCGTGACGGAAGCTCGATTCGAAAAGGACCCAGCAAGTGTCCCCATATCGTAGCGCCCGTGTCGAAAATGTCGGTGGCGACGGGAGAACGAAGGAATATTAGTGTGAAGGTACAGTAAGACAGTAGACTACAAAGACTATAAGTTGACTACAAACTACAAAAAAAATTGGAGAAAAAATTACCATAAATGGGCTTTTTTGACCGATTTTAGCCGAATTCTAGTCAAACTTTCGTAAATTTGCAATTTTACAGTAATCCTAACTAGACTACAAACTACACTTTCAACAATAAACTACATTTTTTGCAGGTCGAAAATGTGGACCCGTCGTTTATGGGCGATTTCAAGTGTGAATTCCGATATGGTACAGTAACCCATGAGAAAATTGCGATGCGAACGTCGGAAGATACGATAACGTAAGTCGAAAATTTTGAATTTGAGACGCAAAATTCGAATTTCGTGCAAAAAATCCTTTAAAAGGAGCCCAAATTTGGTTAGGTTTCTCCGCCCACGTTTAAGCTCCGCCCACTAGTAGGAAGTGGGCGTGGCCTAGTCCTTTTTTGAGATTATTTCTCGTTTTTTGAATGATTCCAGAGCTTTTAGCTCATCAAGAGCTTTGAAATGAACCCAGTCACTACTATACTCCGCGCACTTTGATTTTTTGGACGCGTCGCGGTCGTGCGTCGCGTGTCTGGTGGGGAAATTTCAAAGTGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTGAAGCTCTTAATGAGCTAAACAAGAAAAATACATCAACCTTCAGAAAATTTCAGATTTTCAGCCAAAAAAGAGCGAAATTTTGTACAATTATACAAAGTATTTACAAAGTAATTTATTCAAAGTATTTTTGAAAATCTGAATTTTCCAAAATTCCTGTAAC</canonical>
            <polymorphic>GACAAGTGTCGAAAACAACACATTGTTAATGGTCTTAATGTGAGTTTAGCTACAAAGACTACAAAAACTACAAAAACTACAAACTATAAATTTTCCAGCGTGACGGAAGCTCGATTCGAAAAGGACCCAGCAAGTGTCCCCATATCGTAGCGCCCGTGTCGAAAATGTCGGTGGCGACGGGAGAACGAAGGAATATTAGTGTGAAGGTACAGTAAGACAGTAGACTACAAAGACTATAAGTTGACTACAAACTACAAAAAAAATTGGAGAAAAAATTACCATAAATGGGCTTTTTTGACCGATTTTAGCCGAATTCTAGTCAAACTTTCGTAAATTTGCAATTTTACAGTAATCCTAACTAGACTACAAACTACACTTTCAACAATAAACTACATTTTTTGCAGGTCGAAAATGTGGACCCGTCGTTTATGGGCGATTTCAAGTGTGAATTCCGATATGGTACAGTAACCCATGAGAAAATTGCGATGCGAACGTCGGAWGATACGATAACGTAAGTCGAAAATTTTGAATTTGAGACGCAAAATTCGAATTTCGTGCAAAAAATCCTTTAAAAGGAGCCCAAATTTGGTTAGGTTTCTCCGCCCACGTTTAAGCTCCGCCCACTAGTAGGAAGTGGGCGTGGCCTAGTCCTTTTTTGAGATTATTTCTCGTTTTTTGAATGATTCCAGAGCTTTTAGCTCATCAAGAGCTTTGAAATGAACCCAGTCACTACTATACTCCGCGCACTTTGATTTTTTGGACGCGTCGCGGTCGTGCGTCGCGTGTCTGGTGGGGAAATTTCAAAGTGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTGAAGCTCTTAATGAGCTAAACAAGAAAAATACATCAACCTTCAGAAAATTTCAGATTTTCAGCCAAAAAAGAGCGAAATTTTGTACAATTATACAAAGTATTTACAAAGTAATTTATTCAAAGTATTTTTGAAAATCTGAATTTTCCAAAATTCCTGTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATTCCGATATGGTACAGTAA</pcr_primer_p1>
		<pcr_primer_p2>CTACCTGTGAGATTCTTTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>768</pcr_amplicon_size>
		<canonical_amplicon>TGAATTCCGATATGGTACAGTAACCCATGAGAAAATTGCGATGCGAACGTCGGAAGATACGATAACGTAAGTCGAAA</canonical_amplicon>
		<polymorphic_amplicon>TGAATTCCGATATGGTACAGTAACCCATGAGAAAATTGCGATGCGAACGTCGGAWGATACGATAACGTAAGTCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24546</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>45097</contig_pos>
        <strand>+</strand>
        <context>AGTAGGAAGT[G/T]GGCGTGGCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGGTTAGGTTTCTCCGCCCACGTTTAAGCTCCGCCCACTAGTAGGAAGT</left_flank>
        <right_flank>GGCGTGGCCTAGTCCTTTTTTGAGATTATTTCTCGTTTTTTGAATGATTC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCCCATATCGTAGCGCCCGTGTCGAAAATGTCGGTGGCGACGGGAGAACGAAGGAATATTAGTGTGAAGGTACAGTAAGACAGTAGACTACAAAGACTATAAGTTGACTACAAACTACAAAAAAAATTGGAGAAAAAATTACCATAAATGGGCTTTTTTGACCGATTTTAGCCGAATTCTAGTCAAACTTTCGTAAATTTGCAATTTTACAGTAATCCTAACTAGACTACAAACTACACTTTCAACAATAAACTACATTTTTTGCAGGTCGAAAATGTGGACCCGTCGTTTATGGGCGATTTCAAGTGTGAATTCCGATATGGTACAGTAACCCATGAGAAAATTGCGATGCGAACGTCGGAAGATACGATAACGTAAGTCGAAAATTTTGAATTTGAGACGCAAAATTCGAATTTCGTGCAAAAAATCCTTTAAAAGGAGCCCAAATTTGGTTAGGTTTCTCCGCCCACGTTTAAGCTCCGCCCACTAGTAGGAAGTGGGCGTGGCCTAGTCCTTTTTTGAGATTATTTCTCGTTTTTTGAATGATTCCAGAGCTTTTAGCTCATCAAGAGCTTTGAAATGAACCCAGTCACTACTATACTCCGCGCACTTTGATTTTTTGGACGCGTCGCGGTCGTGCGTCGCGTGTCTGGTGGGGAAATTTCAAAGTGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTGAAGCTCTTAATGAGCTAAACAAGAAAAATACATCAACCTTCAGAAAATTTCAGATTTTCAGCCAAAAAAGAGCGAAATTTTGTACAATTATACAAAGTATTTACAAAGTAATTTATTCAAAGTATTTTTGAAAATCTGAATTTTCCAAAATTCCTGTAACTTTTTTCTGTTTGAAACCATTTTTGATGAATTTTGTTTGTTCTTAGCTTCAGAATGAGCCCAAACTCGACTAGGCTCCGCCCATTTCAAACTTCCCCGTGCGCACGCGACGCGCCGACCGCGACGCGTCTCAAAAC</canonical>
            <polymorphic>TCCCCATATCGTAGCGCCCGTGTCGAAAATGTCGGTGGCGACGGGAGAACGAAGGAATATTAGTGTGAAGGTACAGTAAGACAGTAGACTACAAAGACTATAAGTTGACTACAAACTACAAAAAAAATTGGAGAAAAAATTACCATAAATGGGCTTTTTTGACCGATTTTAGCCGAATTCTAGTCAAACTTTCGTAAATTTGCAATTTTACAGTAATCCTAACTAGACTACAAACTACACTTTCAACAATAAACTACATTTTTTGCAGGTCGAAAATGTGGACCCGTCGTTTATGGGCGATTTCAAGTGTGAATTCCGATATGGTACAGTAACCCATGAGAAAATTGCGATGCGAACGTCGGAAGATACGATAACGTAAGTCGAAAATTTTGAATTTGAGACGCAAAATTCGAATTTCGTGCAAAAAATCCTTTAAAAGGAGCCCAAATTTGGTTAGGTTTCTCCGCCCACGTTTAAGCTCCGCCCACTAGTAGGAAGTKGGCGTGGCCTAGTCCTTTTTTGAGATTATTTCTCGTTTTTTGAATGATTCCAGAGCTTTTAGCTCATCAAGAGCTTTGAAATGAACCCAGTCACTACTATACTCCGCGCACTTTGATTTTTTGGACGCGTCGCGGTCGTGCGTCGCGTGTCTGGTGGGGAAATTTCAAAGTGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTGAAGCTCTTAATGAGCTAAACAAGAAAAATACATCAACCTTCAGAAAATTTCAGATTTTCAGCCAAAAAAGAGCGAAATTTTGTACAATTATACAAAGTATTTACAAAGTAATTTATTCAAAGTATTTTTGAAAATCTGAATTTTCCAAAATTCCTGTAACTTTTTTCTGTTTGAAACCATTTTTGATGAATTTTGTTTGTTCTTAGCTTCAGAATGAGCCCAAACTCGACTAGGCTCCGCCCATTTCAAACTTCCCCGTGCGCACGCGACGCGCCGACCGCGACGCGTCTCAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>275 172 110 87 49 41 32 30 29 28 22 17 17 17 16 15 13 9 7 6 4 2 2</canonical_bands>
                <polymorphic_bands>275 172 110 87 49 41 32 30 29 28 22 19 17 17 17 16 15 9 7 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATTTGGTTAGGTTTCTCC</pcr_primer_p1>
		<pcr_primer_p2>CTACCTGTGAGATTCTTTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>633</pcr_amplicon_size>
		<canonical_amplicon>CAAATTTGGTTAGGTTTCTCCGCCCACGTTTAAGCTCCGCCCACTAGTAGGAAGTGGGCGTGGCCTAGTCCTTTTTTG</canonical_amplicon>
		<polymorphic_amplicon>CAAATTTGGTTAGGTTTCTCCGCCCACGTTTAAGCTCCGCCCACTAGTAGGAAGTKGGCGTGGCCTAGTCCTTTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24547</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>45157</contig_pos>
        <strand></strand>
        <context>ccagagcttt[T/C]agctcatcaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAGTCCTTTTTTGAGATTATTTCTCGTTTTTTGAATGATTCCAGAGCTTT</left_flank>
        <right_flank>AGCTCATCAAGAGCTTTGAAATGAACCCAGTCACTACTATACTCCGCGCA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTGTGAAGGTACAGTAAGACAGTAGACTACAAAGACTATAAGTTGACTACAAACTACAAAAAAAATTGGAGAAAAAATTACCATAAATGGGCTTTTTTGACCGATTTTAGCCGAATTCTAGTCAAACTTTCGTAAATTTGCAATTTTACAGTAATCCTAACTAGACTACAAACTACACTTTCAACAATAAACTACATTTTTTGCAGGTCGAAAATGTGGACCCGTCGTTTATGGGCGATTTCAAGTGTGAATTCCGATATGGTACAGTAACCCATGAGAAAATTGCGATGCGAACGTCGGAAGATACGATAACGTAAGTCGAAAATTTTGAATTTGAGACGCAAAATTCGAATTTCGTGCAAAAAATCCTTTAAAAGGAGCCCAAATTTGGTTAGGTTTCTCCGCCCACGTTTAAGCTCCGCCCACTAGTAGGAAGTGGGCGTGGCCTAGTCCTTTTTTGAGATTATTTCTCGTTTTTTGAATGATTCCAGAGCTTTTAGCTCATCAAGAGCTTTGAAATGAACCCAGTCACTACTATACTCCGCGCACTTTGATTTTTTGGACGCGTCGCGGTCGTGCGTCGCGTGTCTGGTGGGGAAATTTCAAAGTGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTGAAGCTCTTAATGAGCTAAACAAGAAAAATACATCAACCTTCAGAAAATTTCAGATTTTCAGCCAAAAAAGAGCGAAATTTTGTACAATTATACAAAGTATTTACAAAGTAATTTATTCAAAGTATTTTTGAAAATCTGAATTTTCCAAAATTCCTGTAACTTTTTTCTGTTTGAAACCATTTTTGATGAATTTTGTTTGTTCTTAGCTTCAGAATGAGCCCAAACTCGACTAGGCTCCGCCCATTTCAAACTTCCCCGTGCGCACGCGACGCGCCGACCGCGACGCGTCTCAAAACTCAAAGTGGGCGGAGACTAGTCGTGTTGGGGTTCATTTTGAAGCGCACAGCCTGCTGAAA</canonical>
            <polymorphic>TAGTGTGAAGGTACAGTAAGACAGTAGACTACAAAGACTATAAGTTGACTACAAACTACAAAAAAAATTGGAGAAAAAATTACCATAAATGGGCTTTTTTGACCGATTTTAGCCGAATTCTAGTCAAACTTTCGTAAATTTGCAATTTTACAGTAATCCTAACTAGACTACAAACTACACTTTCAACAATAAACTACATTTTTTGCAGGTCGAAAATGTGGACCCGTCGTTTATGGGCGATTTCAAGTGTGAATTCCGATATGGTACAGTAACCCATGAGAAAATTGCGATGCGAACGTCGGAAGATACGATAACGTAAGTCGAAAATTTTGAATTTGAGACGCAAAATTCGAATTTCGTGCAAAAAATCCTTTAAAAGGAGCCCAAATTTGGTTAGGTTTCTCCGCCCACGTTTAAGCTCCGCCCACTAGTAGGAAGTGGGCGTGGCCTAGTCCTTTTTTGAGATTATTTCTCGTTTTTTGAATGATTCCAGAGCTTTYAGCTCATCAAGAGCTTTGAAATGAACCCAGTCACTACTATACTCCGCGCACTTTGATTTTTTGGACGCGTCGCGGTCGTGCGTCGCGTGTCTGGTGGGGAAATTTCAAAGTGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTGAAGCTCTTAATGAGCTAAACAAGAAAAATACATCAACCTTCAGAAAATTTCAGATTTTCAGCCAAAAAAGAGCGAAATTTTGTACAATTATACAAAGTATTTACAAAGTAATTTATTCAAAGTATTTTTGAAAATCTGAATTTTCCAAAATTCCTGTAACTTTTTTCTGTTTGAAACCATTTTTGATGAATTTTGTTTGTTCTTAGCTTCAGAATGAGCCCAAACTCGACTAGGCTCCGCCCATTTCAAACTTCCCCGTGCGCACGCGACGCGCCGACCGCGACGCGTCTCAAAACTCAAAGTGGGCGGAGACTAGTCGTGTTGGGGTTCATTTTGAAGCGCACAGCCTGCTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAATTTGGTTAGGTTTCTCC</pcr_primer_p1>
		<pcr_primer_p2>CTACCTGTGAGATTCTTTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>633</pcr_amplicon_size>
		<canonical_amplicon>CAAATTTGGTTAGGTTTCTCCGCCCACGTTTAAGCTCCGCCCACTAGTAGGAAGTGGGCGTGGCCTAGTCCTTTTTTGAGATTATTTCTCGTTTTTTGAATGATTCCAGAGCTTTTAGCTCATCAAGAGCTTTGAAAT</canonical_amplicon>
		<polymorphic_amplicon>CAAATTTGGTTAGGTTTCTCCGCCCACGTTTAAGCTCCGCCCACTAGTAGGAAGTGGGCGTGGCCTAGTCCTTTTTTGAGATTATTTCTCGTTTTTTGAATGATTCCAGAGCTTTYAGCTCATCAAGAGCTTTGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24548</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>45187</contig_pos>
        <strand></strand>
        <context>aatgaaccca[G/C]tcactactat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TTGAATGATTCCAGAGCTTTTAGCTCATCAAGAGCTTTGAAATGAACCCA</left_flank>
        <right_flank>TCACTACTATACTCCGCGCACTTTGATTTTTTGGACGCGTCGCGGTCGTG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAAAGACTATAAGTTGACTACAAACTACAAAAAAAATTGGAGAAAAAATTACCATAAATGGGCTTTTTTGACCGATTTTAGCCGAATTCTAGTCAAACTTTCGTAAATTTGCAATTTTACAGTAATCCTAACTAGACTACAAACTACACTTTCAACAATAAACTACATTTTTTGCAGGTCGAAAATGTGGACCCGTCGTTTATGGGCGATTTCAAGTGTGAATTCCGATATGGTACAGTAACCCATGAGAAAATTGCGATGCGAACGTCGGAAGATACGATAACGTAAGTCGAAAATTTTGAATTTGAGACGCAAAATTCGAATTTCGTGCAAAAAATCCTTTAAAAGGAGCCCAAATTTGGTTAGGTTTCTCCGCCCACGTTTAAGCTCCGCCCACTAGTAGGAAGTGGGCGTGGCCTAGTCCTTTTTTGAGATTATTTCTCGTTTTTTGAATGATTCCAGAGCTTTTAGCTCATCAAGAGCTTTGAAATGAACCCAGTCACTACTATACTCCGCGCACTTTGATTTTTTGGACGCGTCGCGGTCGTGCGTCGCGTGTCTGGTGGGGAAATTTCAAAGTGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTGAAGCTCTTAATGAGCTAAACAAGAAAAATACATCAACCTTCAGAAAATTTCAGATTTTCAGCCAAAAAAGAGCGAAATTTTGTACAATTATACAAAGTATTTACAAAGTAATTTATTCAAAGTATTTTTGAAAATCTGAATTTTCCAAAATTCCTGTAACTTTTTTCTGTTTGAAACCATTTTTGATGAATTTTGTTTGTTCTTAGCTTCAGAATGAGCCCAAACTCGACTAGGCTCCGCCCATTTCAAACTTCCCCGTGCGCACGCGACGCGCCGACCGCGACGCGTCTCAAAACTCAAAGTGGGCGGAGACTAGTCGTGTTGGGGTTCATTTTGAAGCGCACAGCCTGCTGAAAAAGAATCTCACAGGTAGAGAATGAAATTTT</canonical>
            <polymorphic>ACAAAGACTATAAGTTGACTACAAACTACAAAAAAAATTGGAGAAAAAATTACCATAAATGGGCTTTTTTGACCGATTTTAGCCGAATTCTAGTCAAACTTTCGTAAATTTGCAATTTTACAGTAATCCTAACTAGACTACAAACTACACTTTCAACAATAAACTACATTTTTTGCAGGTCGAAAATGTGGACCCGTCGTTTATGGGCGATTTCAAGTGTGAATTCCGATATGGTACAGTAACCCATGAGAAAATTGCGATGCGAACGTCGGAAGATACGATAACGTAAGTCGAAAATTTTGAATTTGAGACGCAAAATTCGAATTTCGTGCAAAAAATCCTTTAAAAGGAGCCCAAATTTGGTTAGGTTTCTCCGCCCACGTTTAAGCTCCGCCCACTAGTAGGAAGTGGGCGTGGCCTAGTCCTTTTTTGAGATTATTTCTCGTTTTTTGAATGATTCCAGAGCTTTTAGCTCATCAAGAGCTTTGAAATGAACCCASTCACTACTATACTCCGCGCACTTTGATTTTTTGGACGCGTCGCGGTCGTGCGTCGCGTGTCTGGTGGGGAAATTTCAAAGTGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTGAAGCTCTTAATGAGCTAAACAAGAAAAATACATCAACCTTCAGAAAATTTCAGATTTTCAGCCAAAAAAGAGCGAAATTTTGTACAATTATACAAAGTATTTACAAAGTAATTTATTCAAAGTATTTTTGAAAATCTGAATTTTCCAAAATTCCTGTAACTTTTTTCTGTTTGAAACCATTTTTGATGAATTTTGTTTGTTCTTAGCTTCAGAATGAGCCCAAACTCGACTAGGCTCCGCCCATTTCAAACTTCCCCGTGCGCACGCGACGCGCCGACCGCGACGCGTCTCAAAACTCAAAGTGGGCGGAGACTAGTCGTGTTGGGGTTCATTTTGAAGCGCACAGCCTGCTGAAAAAGAATCTCACAGGTAGAGAATGAAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>270 261 238 231</canonical_bands>
                <polymorphic_bands>531 238 231</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATTTGGTTAGGTTTCTCC</pcr_primer_p1>
		<pcr_primer_p2>CTACCTGTGAGATTCTTTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>633</pcr_amplicon_size>
		<canonical_amplicon>CAAATTTGGTTAGGTTTCTCCGCCCACGTTTAAGCTCCGCCCACTAGTAGGAAGTGGGCGTGGCCTAGTCCTTTTTTGAGATTATTTCTCGTTTTTTGAATGATTCCAGAGCTTTTAGCTCATCAAGAGCTTTGAAATGAACCCAGTCACTACTATACTCCGCGCACTTTGATTTTTTGGACGCGTCGCGGTCGTGCGTCGCGTGTCTGGTGGGGAAATTTCAAAGTGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTGAAGCTCTTAATGAGCTAAACAAGAAAAATACATCAACCTTCAGAAAATTTCAGATTTTCAGCCAAAAAAGAGCGAAATTTTGTACAATTATACAAAGTATTTACAAAGTAATTTATTCAAAGTATTTTTGAAAATCTGAATTTTCCAAAATTCCTGTAACTTTTTTCTGTTTGAAACCATTTTTGATGAATTTTGTTTGTTCTTAGCTTCAGAATGAGCCCAAACTCGACTAGGCTCCGCCCATTTCAAACTTCCCCGTGCGCACGCGACGCGCCGACCGCGACGCGTCTCAAAACTCAAAGTGGGCGGAGACTAGTCGTGTTGGGGTTCATTTTGAAGCGCACAGCCTGCTGAAAAAGAATCTCACAGGTAG</canonical_amplicon>
		<polymorphic_amplicon>CAAATTTGGTTAGGTTTCTCCGCCCACGTTTAAGCTCCGCCCACTAGTAGGAAGTGGGCGTGGCCTAGTCCTTTTTTGAGATTATTTCTCGTTTTTTGAATGATTCCAGAGCTTTTAGCTCATCAAGAGCTTTGAAATGAACCCASTCACTACTATACTCCGCGCACTTTGATTTTTTGGACGCGTCGCGGTCGTGCGTCGCGTGTCTGGTGGGGAAATTTCAAAGTGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTGAAGCTCTTAATGAGCTAAACAAGAAAAATACATCAACCTTCAGAAAATTTCAGATTTTCAGCCAAAAAAGAGCGAAATTTTGTACAATTATACAAAGTATTTACAAAGTAATTTATTCAAAGTATTTTTGAAAATCTGAATTTTCCAAAATTCCTGTAACTTTTTTCTGTTTGAAACCATTTTTGATGAATTTTGTTTGTTCTTAGCTTCAGAATGAGCCCAAACTCGACTAGGCTCCGCCCATTTCAAACTTCCCCGTGCGCACGCGACGCGCCGACCGCGACGCGTCTCAAAACTCAAAGTGGGCGGAGACTAGTCGTGTTGGGGTTCATTTTGAAGCGCACAGCCTGCTGAAAAAGAATCTCACAGGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24549</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>48854</contig_pos>
        <strand></strand>
        <context>TGAAAAATTT[G/C]GAGAATTATG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GTAACTCACAAAATGTTGAATGCAATTTCGACTCTTAAATTGAAAAATTT</left_flank>
        <right_flank>GAGAATTATGGGAAATACAGAAAAATCCAAAAAAAAACATTTTTTCGAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATACCATCCGGTGGGATTACTGTAGATGTGTACGGTCAAGGATTCACGCTGCTTCAGCGGCCACGAATGGTGTTTGTTGGATTGGGGTAGGTGAAATTCAAAATTCTCGATTTTTGATGTCAAATTCATTTTTTACACGTTCTGAGCTTCAAAATGGGCCTAAACTCGACTAGGCTCCGCCCATTTTGAGTTTTCAGGCGCGTCGCGGTCGTGCGTCGCGTGCGCCTAGGTCAAATTTCAAAGCGTGCGGAGTCAAGGCAATATGGGGCTCATTTTGAAGCTCTCAATACGTAAAACTGGAATTCATTCGCAAAAAACAAAATTTTAGGAAAATTATAGAAAATATAGAATTTCGAAAAAAAATTTTGAAAATTTTGAAAGTCCGATTTTTTCGGAGTTTCTGTAATTTGTCATAGTTTCTGAATGTTTTTGATGGATTTTGCTTATTGTAACTCACAAAATGTTGAATGCAATTTCGACTCTTAAATTGAAAAATTTGGAGAATTATGGGAAATACAGAAAAATCCAAAAAAAAACATTTTTTCGAAAATTTTGAAAATCTGATTTTTTCGGAATTTCTGTAACTTTTCTTTTTTGACAGTTTTCAATAGATTCAGTCTGATTCGGGCTTCAAAATGAGCCCAAACACGCCTAGGCCCCGCCCACTTTGAGTTTTCCAGCCGCGTCGCGGTCGTGCGTCGCGTGCGTCCTCGAAAATTCAAAATGGGCGGAGCCTAGTGTTTAAGCTTATTTTGAAGCTCTCTTTAAGTTAAATAGAATGACAATCATTTCAAAGTAACCCGACTTTTTTGAAAGGAGCTATATTCAAAATTTCAAAAAAACTCAAAACTATTATTTTTCAAATATTTTAGGCCCGTTTTTAGGCCATTTTTGAGTATAATCGATTTTTCCAGAAACGACAAGTCATACGGCCCCCTATGCTCAATTATCGATGATCAATTGATGAAATGTGCCACACCTACAGTACCCGGAGCCGCT</canonical>
            <polymorphic>AATACCATCCGGTGGGATTACTGTAGATGTGTACGGTCAAGGATTCACGCTGCTTCAGCGGCCACGAATGGTGTTTGTTGGATTGGGGTAGGTGAAATTCAAAATTCTCGATTTTTGATGTCAAATTCATTTTTTACACGTTCTGAGCTTCAAAATGGGCCTAAACTCGACTAGGCTCCGCCCATTTTGAGTTTTCAGGCGCGTCGCGGTCGTGCGTCGCGTGCGCCTAGGTCAAATTTCAAAGCGTGCGGAGTCAAGGCAATATGGGGCTCATTTTGAAGCTCTCAATACGTAAAACTGGAATTCATTCGCAAAAAACAAAATTTTAGGAAAATTATAGAAAATATAGAATTTCGAAAAAAAATTTTGAAAATTTTGAAAGTCCGATTTTTTCGGAGTTTCTGTAATTTGTCATAGTTTCTGAATGTTTTTGATGGATTTTGCTTATTGTAACTCACAAAATGTTGAATGCAATTTCGACTCTTAAATTGAAAAATTTSGAGAATTATGGGAAATACAGAAAAATCCAAAAAAAAACATTTTTTCGAAAATTTTGAAAATCTGATTTTTTCGGAATTTCTGTAACTTTTCTTTTTTGACAGTTTTCAATAGATTCAGTCTGATTCGGGCTTCAAAATGAGCCCAAACACGCCTAGGCCCCGCCCACTTTGAGTTTTCCAGCCGCGTCGCGGTCGTGCGTCGCGTGCGTCCTCGAAAATTCAAAATGGGCGGAGCCTAGTGTTTAAGCTTATTTTGAAGCTCTCTTTAAGTTAAATAGAATGACAATCATTTCAAAGTAACCCGACTTTTTTGAAAGGAGCTATATTCAAAATTTCAAAAAAACTCAAAACTATTATTTTTCAAATATTTTAGGCCCGTTTTTAGGCCATTTTTGAGTATAATCGATTTTTCCAGAAACGACAAGTCATACGGCCCCCTATGCTCAATTATCGATGATCAATTGATGAAATGTGCCACACCTACAGTACCCGGAGCCGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGTAACTCACAAAATGTTGAAT</pcr_primer_p1>
		<pcr_primer_p2>GTCGGGTTACTTTGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>360</pcr_amplicon_size>
		<canonical_amplicon>ATTGTAACTCACAAAATGTTGAATGCAATTTCGACTCTTAAATTGAAAAATTTGGAGAATTATGGGAAATACAGAAAAATCCAAAAAAAAACATTTTTTCGAAAATTTTGAAAATCTGATTTTTTCGGAATTTCTGTAACTTTTCTTTTTTGACAGTTTTCAATAGATTCAGTCTGATTCGGGCTTCAAAATGAGCCCAAACACGCCTAGGCCCCGCCCACTTTGAGTTTTCCAGCCGCGTCGCGGTCGTGCGTCGCGTGCGTCCTCGAAAATTCAAAATGGGCGGAGCCTAGTGTTTAAGCTTATTTTGAAGCTCTCTTTAAGTTAAATAGAATGACAATCATTTCAAAGTAACCCGAC</canonical_amplicon>
		<polymorphic_amplicon>ATTGTAACTCACAAAATGTTGAATGCAATTTCGACTCTTAAATTGAAAAATTTSGAGAATTATGGGAAATACAGAAAAATCCAAAAAAAAACATTTTTTCGAAAATTTTGAAAATCTGATTTTTTCGGAATTTCTGTAACTTTTCTTTTTTGACAGTTTTCAATAGATTCAGTCTGATTCGGGCTTCAAAATGAGCCCAAACACGCCTAGGCCCCGCCCACTTTGAGTTTTCCAGCCGCGTCGCGGTCGTGCGTCGCGTGCGTCCTCGAAAATTCAAAATGGGCGGAGCCTAGTGTTTAAGCTTATTTTGAAGCTCTCTTTAAGTTAAATAGAATGACAATCATTTCAAAGTAACCCGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24550</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>48973</contig_pos>
        <strand></strand>
        <context>atagattcag[T/C]ywgattcggg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTCGGAATTTCTGTAACTTTTCTTTTTTGACAGTTTTCAATAGATTCAG</left_flank>
        <right_flank>CTGATTCGGGCTTCAAAATGAGCCCAAACACGCCTAGGCCCCGCCCACTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCAAATTCATTTTTTACACGTTCTGAGCTTCAAAATGGGCCTAAACTCGACTAGGCTCCGCCCATTTTGAGTTTTCAGGCGCGTCGCGGTCGTGCGTCGCGTGCGCCTAGGTCAAATTTCAAAGCGTGCGGAGTCAAGGCAATATGGGGCTCATTTTGAAGCTCTCAATACGTAAAACTGGAATTCATTCGCAAAAAACAAAATTTTAGGAAAATTATAGAAAATATAGAATTTCGAAAAAAAATTTTGAAAATTTTGAAAGTCCGATTTTTTCGGAGTTTCTGTAATTTGTCATAGTTTCTGAATGTTTTTGATGGATTTTGCTTATTGTAACTCACAAAATGTTGAATGCAATTTCGACTCTTAAATTGAAAAATTTGGAGAATTATGGGAAATACAGAAAAATCCAAAAAAAAACATTTTTTCGAAAATTTTGAAAATCTGATTTTTTCGGAATTTCTGTAACTTTTCTTTTTTGACAGTTTTCAATAGATTCAGTCTGATTCGGGCTTCAAAATGAGCCCAAACACGCCTAGGCCCCGCCCACTTTGAGTTTTCCAGCCGCGTCGCGGTCGTGCGTCGCGTGCGTCCTCGAAAATTCAAAATGGGCGGAGCCTAGTGTTTAAGCTTATTTTGAAGCTCTCTTTAAGTTAAATAGAATGACAATCATTTCAAAGTAACCCGACTTTTTTGAAAGGAGCTATATTCAAAATTTCAAAAAAACTCAAAACTATTATTTTTCAAATATTTTAGGCCCGTTTTTAGGCCATTTTTGAGTATAATCGATTTTTCCAGAAACGACAAGTCATACGGCCCCCTATGCTCAATTATCGATGATCAATTGATGAAATGTGCCACACCTACAGTACCCGGAGCCGCTAGAGACACTCAAGTAGAGAAGATCACAGATTACGCGTTTGATTTCGATGGAGCCGAGTTGTATAGATCGAAGATCAAGATTATGCCCCCTCCATCGTTTGAAATGCTCAACGAGCCCCG</canonical>
            <polymorphic>GTCAAATTCATTTTTTACACGTTCTGAGCTTCAAAATGGGCCTAAACTCGACTAGGCTCCGCCCATTTTGAGTTTTCAGGCGCGTCGCGGTCGTGCGTCGCGTGCGCCTAGGTCAAATTTCAAAGCGTGCGGAGTCAAGGCAATATGGGGCTCATTTTGAAGCTCTCAATACGTAAAACTGGAATTCATTCGCAAAAAACAAAATTTTAGGAAAATTATAGAAAATATAGAATTTCGAAAAAAAATTTTGAAAATTTTGAAAGTCCGATTTTTTCGGAGTTTCTGTAATTTGTCATAGTTTCTGAATGTTTTTGATGGATTTTGCTTATTGTAACTCACAAAATGTTGAATGCAATTTCGACTCTTAAATTGAAAAATTTGGAGAATTATGGGAAATACAGAAAAATCCAAAAAAAAACATTTTTTCGAAAATTTTGAAAATCTGATTTTTTCGGAATTTCTGTAACTTTTCTTTTTTGACAGTTTTCAATAGATTCAGYCTGATTCGGGCTTCAAAATGAGCCCAAACACGCCTAGGCCCCGCCCACTTTGAGTTTTCCAGCCGCGTCGCGGTCGTGCGTCGCGTGCGTCCTCGAAAATTCAAAATGGGCGGAGCCTAGTGTTTAAGCTTATTTTGAAGCTCTCTTTAAGTTAAATAGAATGACAATCATTTCAAAGTAACCCGACTTTTTTGAAAGGAGCTATATTCAAAATTTCAAAAAAACTCAAAACTATTATTTTTCAAATATTTTAGGCCCGTTTTTAGGCCATTTTTGAGTATAATCGATTTTTCCAGAAACGACAAGTCATACGGCCCCCTATGCTCAATTATCGATGATCAATTGATGAAATGTGCCACACCTACAGTACCCGGAGCCGCTAGAGACACTCAAGTAGAGAAGATCACAGATTACGCGTTTGATTTCGATGGAGCCGAGTTGTATAGATCGAAGATCAAGATTATGCCCCCTCCATCGTTTGAAATGCTCAACGAGCCCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>498 241 141 48 27 25 10 10</canonical_bands>
                <polymorphic_bands>546 241 141 27 25 10 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTATGGGAAATACAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GTCGGGTTACTTTGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>304</pcr_amplicon_size>
		<canonical_amplicon>GAATTATGGGAAATACAGAAAAATCCAAAAAAAAACATTTTTTCGAAAATTTTGAAAATCTGATTTTTTCGGAATTTCTGTAACTTTTCTTTTTTGACAGTTTTCAATAGATTCAGTCTGATTCGGGCTTCAAAATGAGCCCAAACACGCCTAGGCCCCGCCCACTTTGAGTTTTCCAGCCGCGTCGCGGTCGTGCGTCGCGTGCGTCCTCGAAAATTCAAAATGGGCGGAGCCTAGTGTTTAAGCTTATTTTGAAGCTCTCTTTAAGTTAAATAGAATGACAATCATTTCAAAGTAACCCGAC</canonical_amplicon>
		<polymorphic_amplicon>GAATTATGGGAAATACAGAAAAATCCAAAAAAAAACATTTTTTCGAAAATTTTGAAAATCTGATTTTTTCGGAATTTCTGTAACTTTTCTTTTTTGACAGTTTTCAATAGATTCAGYCTGATTCGGGCTTCAAAATGAGCCCAAACACGCCTAGGCCCCGCCCACTTTGAGTTTTCCAGCCGCGTCGCGGTCGTGCGTCGCGTGCGTCCTCGAAAATTCAAAATGGGCGGAGCCTAGTGTTTAAGCTTATTTTGAAGCTCTCTTTAAGTTAAATAGAATGACAATCATTTCAAAGTAACCCGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24551</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>48974</contig_pos>
        <strand></strand>
        <context>tagattcagy[C/T]wgattcgggc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCGGAATTTCTGTAACTTTTCTTTTTTGACAGTTTTCAATAGATTCAGT</left_flank>
        <right_flank>TGATTCGGGCTTCAAAATGAGCCCAAACACGCCTAGGCCCCGCCCACTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAATTCATTTTTTACACGTTCTGAGCTTCAAAATGGGCCTAAACTCGACTAGGCTCCGCCCATTTTGAGTTTTCAGGCGCGTCGCGGTCGTGCGTCGCGTGCGCCTAGGTCAAATTTCAAAGCGTGCGGAGTCAAGGCAATATGGGGCTCATTTTGAAGCTCTCAATACGTAAAACTGGAATTCATTCGCAAAAAACAAAATTTTAGGAAAATTATAGAAAATATAGAATTTCGAAAAAAAATTTTGAAAATTTTGAAAGTCCGATTTTTTCGGAGTTTCTGTAATTTGTCATAGTTTCTGAATGTTTTTGATGGATTTTGCTTATTGTAACTCACAAAATGTTGAATGCAATTTCGACTCTTAAATTGAAAAATTTGGAGAATTATGGGAAATACAGAAAAATCCAAAAAAAAACATTTTTTCGAAAATTTTGAAAATCTGATTTTTTCGGAATTTCTGTAACTTTTCTTTTTTGACAGTTTTCAATAGATTCAGTCTGATTCGGGCTTCAAAATGAGCCCAAACACGCCTAGGCCCCGCCCACTTTGAGTTTTCCAGCCGCGTCGCGGTCGTGCGTCGCGTGCGTCCTCGAAAATTCAAAATGGGCGGAGCCTAGTGTTTAAGCTTATTTTGAAGCTCTCTTTAAGTTAAATAGAATGACAATCATTTCAAAGTAACCCGACTTTTTTGAAAGGAGCTATATTCAAAATTTCAAAAAAACTCAAAACTATTATTTTTCAAATATTTTAGGCCCGTTTTTAGGCCATTTTTGAGTATAATCGATTTTTCCAGAAACGACAAGTCATACGGCCCCCTATGCTCAATTATCGATGATCAATTGATGAAATGTGCCACACCTACAGTACCCGGAGCCGCTAGAGACACTCAAGTAGAGAAGATCACAGATTACGCGTTTGATTTCGATGGAGCCGAGTTGTATAGATCGAAGATCAAGATTATGCCCCCTCCATCGTTTGAAATGCTCAACGAGCCCCGT</canonical>
            <polymorphic>TCAAATTCATTTTTTACACGTTCTGAGCTTCAAAATGGGCCTAAACTCGACTAGGCTCCGCCCATTTTGAGTTTTCAGGCGCGTCGCGGTCGTGCGTCGCGTGCGCCTAGGTCAAATTTCAAAGCGTGCGGAGTCAAGGCAATATGGGGCTCATTTTGAAGCTCTCAATACGTAAAACTGGAATTCATTCGCAAAAAACAAAATTTTAGGAAAATTATAGAAAATATAGAATTTCGAAAAAAAATTTTGAAAATTTTGAAAGTCCGATTTTTTCGGAGTTTCTGTAATTTGTCATAGTTTCTGAATGTTTTTGATGGATTTTGCTTATTGTAACTCACAAAATGTTGAATGCAATTTCGACTCTTAAATTGAAAAATTTGGAGAATTATGGGAAATACAGAAAAATCCAAAAAAAAACATTTTTTCGAAAATTTTGAAAATCTGATTTTTTCGGAATTTCTGTAACTTTTCTTTTTTGACAGTTTTCAATAGATTCAGTYTGATTCGGGCTTCAAAATGAGCCCAAACACGCCTAGGCCCCGCCCACTTTGAGTTTTCCAGCCGCGTCGCGGTCGTGCGTCGCGTGCGTCCTCGAAAATTCAAAATGGGCGGAGCCTAGTGTTTAAGCTTATTTTGAAGCTCTCTTTAAGTTAAATAGAATGACAATCATTTCAAAGTAACCCGACTTTTTTGAAAGGAGCTATATTCAAAATTTCAAAAAAACTCAAAACTATTATTTTTCAAATATTTTAGGCCCGTTTTTAGGCCATTTTTGAGTATAATCGATTTTTCCAGAAACGACAAGTCATACGGCCCCCTATGCTCAATTATCGATGATCAATTGATGAAATGTGCCACACCTACAGTACCCGGAGCCGCTAGAGACACTCAAGTAGAGAAGATCACAGATTACGCGTTTGATTTCGATGGAGCCGAGTTGTATAGATCGAAGATCAAGATTATGCCCCCTCCATCGTTTGAAATGCTCAACGAGCCCCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>499 241 141 48 27 24 10 10</canonical_bands>
                <polymorphic_bands>547 241 141 27 24 10 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTATGGGAAATACAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GTCGGGTTACTTTGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>304</pcr_amplicon_size>
		<canonical_amplicon>GAATTATGGGAAATACAGAAAAATCCAAAAAAAAACATTTTTTCGAAAATTTTGAAAATCTGATTTTTTCGGAATTTCTGTAACTTTTCTTTTTTGACAGTTTTCAATAGATTCAGTCTGATTCGGGCTTCAAAATGAGCCCAAACACGCCTAGGCCCCGCCCACTTTGAGTTTTCCAGCCGCGTCGCGGTCGTGCGTCGCGTGCGTCCTCGAAAATTCAAAATGGGCGGAGCCTAGTGTTTAAGCTTATTTTGAAGCTCTCTTTAAGTTAAATAGAATGACAATCATTTCAAAGTAACCCGAC</canonical_amplicon>
		<polymorphic_amplicon>GAATTATGGGAAATACAGAAAAATCCAAAAAAAAACATTTTTTCGAAAATTTTGAAAATCTGATTTTTTCGGAATTTCTGTAACTTTTCTTTTTTGACAGTTTTCAATAGATTCAGTYTGATTCGGGCTTCAAAATGAGCCCAAACACGCCTAGGCCCCGCCCACTTTGAGTTTTCCAGCCGCGTCGCGGTCGTGCGTCGCGTGCGTCCTCGAAAATTCAAAATGGGCGGAGCCTAGTGTTTAAGCTTATTTTGAAGCTCTCTTTAAGTTAAATAGAATGACAATCATTTCAAAGTAACCCGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24552</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>48975</contig_pos>
        <strand></strand>
        <context>agattcagyy[T/A]gattcgggcw</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCGGAATTTCTGTAACTTTTCTTTTTTGACAGTTTTCAATAGATTCAGTC</left_flank>
        <right_flank>GATTCGGGCTTCAAAATGAGCCCAAACACGCCTAGGCCCCGCCCACTTTG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATTCATTTTTTACACGTTCTGAGCTTCAAAATGGGCCTAAACTCGACTAGGCTCCGCCCATTTTGAGTTTTCAGGCGCGTCGCGGTCGTGCGTCGCGTGCGCCTAGGTCAAATTTCAAAGCGTGCGGAGTCAAGGCAATATGGGGCTCATTTTGAAGCTCTCAATACGTAAAACTGGAATTCATTCGCAAAAAACAAAATTTTAGGAAAATTATAGAAAATATAGAATTTCGAAAAAAAATTTTGAAAATTTTGAAAGTCCGATTTTTTCGGAGTTTCTGTAATTTGTCATAGTTTCTGAATGTTTTTGATGGATTTTGCTTATTGTAACTCACAAAATGTTGAATGCAATTTCGACTCTTAAATTGAAAAATTTGGAGAATTATGGGAAATACAGAAAAATCCAAAAAAAAACATTTTTTCGAAAATTTTGAAAATCTGATTTTTTCGGAATTTCTGTAACTTTTCTTTTTTGACAGTTTTCAATAGATTCAGTCTGATTCGGGCTTCAAAATGAGCCCAAACACGCCTAGGCCCCGCCCACTTTGAGTTTTCCAGCCGCGTCGCGGTCGTGCGTCGCGTGCGTCCTCGAAAATTCAAAATGGGCGGAGCCTAGTGTTTAAGCTTATTTTGAAGCTCTCTTTAAGTTAAATAGAATGACAATCATTTCAAAGTAACCCGACTTTTTTGAAAGGAGCTATATTCAAAATTTCAAAAAAACTCAAAACTATTATTTTTCAAATATTTTAGGCCCGTTTTTAGGCCATTTTTGAGTATAATCGATTTTTCCAGAAACGACAAGTCATACGGCCCCCTATGCTCAATTATCGATGATCAATTGATGAAATGTGCCACACCTACAGTACCCGGAGCCGCTAGAGACACTCAAGTAGAGAAGATCACAGATTACGCGTTTGATTTCGATGGAGCCGAGTTGTATAGATCGAAGATCAAGATTATGCCCCCTCCATCGTTTGAAATGCTCAACGAGCCCCGTT</canonical>
            <polymorphic>CAAATTCATTTTTTACACGTTCTGAGCTTCAAAATGGGCCTAAACTCGACTAGGCTCCGCCCATTTTGAGTTTTCAGGCGCGTCGCGGTCGTGCGTCGCGTGCGCCTAGGTCAAATTTCAAAGCGTGCGGAGTCAAGGCAATATGGGGCTCATTTTGAAGCTCTCAATACGTAAAACTGGAATTCATTCGCAAAAAACAAAATTTTAGGAAAATTATAGAAAATATAGAATTTCGAAAAAAAATTTTGAAAATTTTGAAAGTCCGATTTTTTCGGAGTTTCTGTAATTTGTCATAGTTTCTGAATGTTTTTGATGGATTTTGCTTATTGTAACTCACAAAATGTTGAATGCAATTTCGACTCTTAAATTGAAAAATTTGGAGAATTATGGGAAATACAGAAAAATCCAAAAAAAAACATTTTTTCGAAAATTTTGAAAATCTGATTTTTTCGGAATTTCTGTAACTTTTCTTTTTTGACAGTTTTCAATAGATTCAGTCWGATTCGGGCTTCAAAATGAGCCCAAACACGCCTAGGCCCCGCCCACTTTGAGTTTTCCAGCCGCGTCGCGGTCGTGCGTCGCGTGCGTCCTCGAAAATTCAAAATGGGCGGAGCCTAGTGTTTAAGCTTATTTTGAAGCTCTCTTTAAGTTAAATAGAATGACAATCATTTCAAAGTAACCCGACTTTTTTGAAAGGAGCTATATTCAAAATTTCAAAAAAACTCAAAACTATTATTTTTCAAATATTTTAGGCCCGTTTTTAGGCCATTTTTGAGTATAATCGATTTTTCCAGAAACGACAAGTCATACGGCCCCCTATGCTCAATTATCGATGATCAATTGATGAAATGTGCCACACCTACAGTACCCGGAGCCGCTAGAGACACTCAAGTAGAGAAGATCACAGATTACGCGTTTGATTTCGATGGAGCCGAGTTGTATAGATCGAAGATCAAGATTATGCCCCCTCCATCGTTTGAAATGCTCAACGAGCCCCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTATGGGAAATACAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GTCGGGTTACTTTGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>304</pcr_amplicon_size>
		<canonical_amplicon>GAATTATGGGAAATACAGAAAAATCCAAAAAAAAACATTTTTTCGAAAATTTTGAAAATCTGATTTTTTCGGAATTTCTGTAACTTTTCTTTTTTGACAGTTTTCAATAGATTCAGTCTGATTCGGGCTTCAAAATGAGCCCAAACACGCCTAGGCCCCGCCCACTTTGAGTTTTCCAGCCGCGTCGCGGTCGTGCGTCGCGTGCGTCCTCGAAAATTCAAAATGGGCGGAGCCTAGTGTTTAAGCTTATTTTGAAGCTCTCTTTAAGTTAAATAGAATGACAATCATTTCAAAGTAACCCGAC</canonical_amplicon>
		<polymorphic_amplicon>GAATTATGGGAAATACAGAAAAATCCAAAAAAAAACATTTTTTCGAAAATTTTGAAAATCTGATTTTTTCGGAATTTCTGTAACTTTTCTTTTTTGACAGTTTTCAATAGATTCAGTCWGATTCGGGCTTCAAAATGAGCCCAAACACGCCTAGGCCCCGCCCACTTTGAGTTTTCCAGCCGCGTCGCGGTCGTGCGTCGCGTGCGTCCTCGAAAATTCAAAATGGGCGGAGCCTAGTGTTTAAGCTTATTTTGAAGCTCTCTTTAAGTTAAATAGAATGACAATCATTTCAAAGTAACCCGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24553</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>48985</contig_pos>
        <strand></strand>
        <context>wgattcgggc[T/A]tcaaaatgag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGTAACTTTTCTTTTTTGACAGTTTTCAATAGATTCAGTCTGATTCGGGC</left_flank>
        <right_flank>TCAAAATGAGCCCAAACACGCCTAGGCCCCGCCCACTTTGAGTTTTCCAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTACACGTTCTGAGCTTCAAAATGGGCCTAAACTCGACTAGGCTCCGCCCATTTTGAGTTTTCAGGCGCGTCGCGGTCGTGCGTCGCGTGCGCCTAGGTCAAATTTCAAAGCGTGCGGAGTCAAGGCAATATGGGGCTCATTTTGAAGCTCTCAATACGTAAAACTGGAATTCATTCGCAAAAAACAAAATTTTAGGAAAATTATAGAAAATATAGAATTTCGAAAAAAAATTTTGAAAATTTTGAAAGTCCGATTTTTTCGGAGTTTCTGTAATTTGTCATAGTTTCTGAATGTTTTTGATGGATTTTGCTTATTGTAACTCACAAAATGTTGAATGCAATTTCGACTCTTAAATTGAAAAATTTGGAGAATTATGGGAAATACAGAAAAATCCAAAAAAAAACATTTTTTCGAAAATTTTGAAAATCTGATTTTTTCGGAATTTCTGTAACTTTTCTTTTTTGACAGTTTTCAATAGATTCAGTCTGATTCGGGCTTCAAAATGAGCCCAAACACGCCTAGGCCCCGCCCACTTTGAGTTTTCCAGCCGCGTCGCGGTCGTGCGTCGCGTGCGTCCTCGAAAATTCAAAATGGGCGGAGCCTAGTGTTTAAGCTTATTTTGAAGCTCTCTTTAAGTTAAATAGAATGACAATCATTTCAAAGTAACCCGACTTTTTTGAAAGGAGCTATATTCAAAATTTCAAAAAAACTCAAAACTATTATTTTTCAAATATTTTAGGCCCGTTTTTAGGCCATTTTTGAGTATAATCGATTTTTCCAGAAACGACAAGTCATACGGCCCCCTATGCTCAATTATCGATGATCAATTGATGAAATGTGCCACACCTACAGTACCCGGAGCCGCTAGAGACACTCAAGTAGAGAAGATCACAGATTACGCGTTTGATTTCGATGGAGCCGAGTTGTATAGATCGAAGATCAAGATTATGCCCCCTCCATCGTTTGAAATGCTCAACGAGCCCCGTTTTGTGCGTCC</canonical>
            <polymorphic>TTTTACACGTTCTGAGCTTCAAAATGGGCCTAAACTCGACTAGGCTCCGCCCATTTTGAGTTTTCAGGCGCGTCGCGGTCGTGCGTCGCGTGCGCCTAGGTCAAATTTCAAAGCGTGCGGAGTCAAGGCAATATGGGGCTCATTTTGAAGCTCTCAATACGTAAAACTGGAATTCATTCGCAAAAAACAAAATTTTAGGAAAATTATAGAAAATATAGAATTTCGAAAAAAAATTTTGAAAATTTTGAAAGTCCGATTTTTTCGGAGTTTCTGTAATTTGTCATAGTTTCTGAATGTTTTTGATGGATTTTGCTTATTGTAACTCACAAAATGTTGAATGCAATTTCGACTCTTAAATTGAAAAATTTGGAGAATTATGGGAAATACAGAAAAATCCAAAAAAAAACATTTTTTCGAAAATTTTGAAAATCTGATTTTTTCGGAATTTCTGTAACTTTTCTTTTTTGACAGTTTTCAATAGATTCAGTCTGATTCGGGCWTCAAAATGAGCCCAAACACGCCTAGGCCCCGCCCACTTTGAGTTTTCCAGCCGCGTCGCGGTCGTGCGTCGCGTGCGTCCTCGAAAATTCAAAATGGGCGGAGCCTAGTGTTTAAGCTTATTTTGAAGCTCTCTTTAAGTTAAATAGAATGACAATCATTTCAAAGTAACCCGACTTTTTTGAAAGGAGCTATATTCAAAATTTCAAAAAAACTCAAAACTATTATTTTTCAAATATTTTAGGCCCGTTTTTAGGCCATTTTTGAGTATAATCGATTTTTCCAGAAACGACAAGTCATACGGCCCCCTATGCTCAATTATCGATGATCAATTGATGAAATGTGCCACACCTACAGTACCCGGAGCCGCTAGAGACACTCAAGTAGAGAAGATCACAGATTACGCGTTTGATTTCGATGGAGCCGAGTTGTATAGATCGAAGATCAAGATTATGCCCCCTCCATCGTTTGAAATGCTCAACGAGCCCCGTTTTGTGCGTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>348 94 62 62 61 57 54 53 47 24 17 16 16 16 13 12 12 12 12 12</canonical_bands>
                <polymorphic_bands>360 94 62 62 61 57 54 53 47 24 17 16 16 16 13 12 12 12 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTATGGGAAATACAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GTCGGGTTACTTTGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>304</pcr_amplicon_size>
		<canonical_amplicon>GAATTATGGGAAATACAGAAAAATCCAAAAAAAAACATTTTTTCGAAAATTTTGAAAATCTGATTTTTTCGGAATTTCTGTAACTTTTCTTTTTTGACAGTTTTCAATAGATTCAGTCTGATTCGGGCTTCAAAATGAGCCCAAACACGCCTAGGCCCCGCCCACTTTGAGTTTTCCAGCCGCGTCGCGGTCGTGCGTCGCGTGCGTCCTCGAAAATTCAAAATGGGCGGAGCCTAGTGTTTAAGCTTATTTTGAAGCTCTCTTTAAGTTAAATAGAATGACAATCATTTCAAAGTAACCCGAC</canonical_amplicon>
		<polymorphic_amplicon>GAATTATGGGAAATACAGAAAAATCCAAAAAAAAACATTTTTTCGAAAATTTTGAAAATCTGATTTTTTCGGAATTTCTGTAACTTTTCTTTTTTGACAGTTTTCAATAGATTCAGTCTGATTCGGGCWTCAAAATGAGCCCAAACACGCCTAGGCCCCGCCCACTTTGAGTTTTCCAGCCGCGTCGCGGTCGTGCGTCGCGTGCGTCCTCGAAAATTCAAAATGGGCGGAGCCTAGTGTTTAAGCTTATTTTGAAGCTCTCTTTAAGTTAAATAGAATGACAATCATTTCAAAGTAACCCGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24554</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>80496</contig_pos>
        <strand></strand>
        <context>tccgacgcgt[C/T]gcggtcgtgc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACGAACCTAATCACGGCTAGGTTCTGTTAAGTTCCATTTTCCGACGCGT</left_flank>
        <right_flank>GCGGTCGTGCGTAGCGTGCTTAAAGAAATTTCAAAGTGGGCGAAGCTCAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGCTGGAGCCTGAACCACATCCGATTCCCTTATTAACTTGAAGAGAGCAAGTATAGGCTTTACTTGGACAACAACCGTATACCAGACCATCAAAAGTGCACTCATAGTTGGCTGGACACGCCGTACCACCTAGTCCTTCTCCGCATTGCATGAATTTCCCGGAAAAATCCACATAGGCTCGACCTTGGGGGCATTTTGGCTCGGCTAAAACATACTTTTGTAATTTCAGTTCCTTAGTTTTTGTTTAAAACTGAAATACGTTACAGATTTGAATTCAGCGCAAAAAATGCTTGAAAATGAGTATAAACACGACTAGGTTCTGAAAAATTTGCAGTTTTTTTGACTTTTGGGTCCAAAAAATGTGTAAACTGGCTCTAACTCGCTTAGGAATTGTACAAATCGAAAAAATTCAAACGGCATTGTATTTGGCAAGTCAAGAACTTTTCAAACGAACCTAATCACGGCTAGGTTCTGTTAAGTTCCATTTTCCGACGCGTCGCGGTCGTGCGTAGCGTGCTTAAAGAAATTTCAAAGTGGGCGAAGCTCAGTCGAGTTTAGGCTCATTTTGAAGCACTAGACAAGACAAACACAGTGATGTTTGAATTTTTCGATTTAAACAAAATTTTAGCGAGTGAGAGCAGTTTTACACTCTTTCGGGTCCCACCACGAAAAATTCCAACTTTTCCATTTTTTTCCCCAAATCTAGTCGTGTTAAAACCTCTATTACTGTATATCTCGTAAAATGCGCTTTAAAATGAGTTCAAACTCGACTAGACTCCGCCCATTTTGAAATTTCACCTTGACACGCGACGCCCGACCGCGATGCACCGTAAAAACCAAAGTGGGCGGAGCCTAGTCGAGTTTGGGCTCATTTTGAAGCTCTGAACAAGACAGATATGACTGTGTTTTTAAAAATTCAAAATTCTCGATTTTTCAGAAGTTACAGCTTAAAAAAAGATTTGTGTCAAAACTGATCTAGCTCGTTTTCTATCGATTTT</canonical>
            <polymorphic>ATAGCTGGAGCCTGAACCACATCCGATTCCCTTATTAACTTGAAGAGAGCAAGTATAGGCTTTACTTGGACAACAACCGTATACCAGACCATCAAAAGTGCACTCATAGTTGGCTGGACACGCCGTACCACCTAGTCCTTCTCCGCATTGCATGAATTTCCCGGAAAAATCCACATAGGCTCGACCTTGGGGGCATTTTGGCTCGGCTAAAACATACTTTTGTAATTTCAGTTCCTTAGTTTTTGTTTAAAACTGAAATACGTTACAGATTTGAATTCAGCGCAAAAAATGCTTGAAAATGAGTATAAACACGACTAGGTTCTGAAAAATTTGCAGTTTTTTTGACTTTTGGGTCCAAAAAATGTGTAAACTGGCTCTAACTCGCTTAGGAATTGTACAAATCGAAAAAATTCAAACGGCATTGTATTTGGCAAGTCAAGAACTTTTCAAACGAACCTAATCACGGCTAGGTTCTGTTAAGTTCCATTTTCCGACGCGTYGCGGTCGTGCGTAGCGTGCTTAAAGAAATTTCAAAGTGGGCGAAGCTCAGTCGAGTTTAGGCTCATTTTGAAGCACTAGACAAGACAAACACAGTGATGTTTGAATTTTTCGATTTAAACAAAATTTTAGCGAGTGAGAGCAGTTTTACACTCTTTCGGGTCCCACCACGAAAAATTCCAACTTTTCCATTTTTTTCCCCAAATCTAGTCGTGTTAAAACCTCTATTACTGTATATCTCGTAAAATGCGCTTTAAAATGAGTTCAAACTCGACTAGACTCCGCCCATTTTGAAATTTCACCTTGACACGCGACGCCCGACCGCGATGCACCGTAAAAACCAAAGTGGGCGGAGCCTAGTCGAGTTTGGGCTCATTTTGAAGCTCTGAACAAGACAGATATGACTGTGTTTTTAAAAATTCAAAATTCTCGATTTTTCAGAAGTTACAGCTTAAAAAAAGATTTGTGTCAAAACTGATCTAGCTCGTTTTCTATCGATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>496 308 178 13 5</canonical_bands>
                <polymorphic_bands>496 313 178 13</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>496 313 186 5</canonical_bands>
                <polymorphic_bands>496 318 186</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACATACTTTTGTAATTTCAGTTCC</pcr_primer_p1>
		<pcr_primer_p2>ACGACTAGATTTGGGGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>502</pcr_amplicon_size>
		<canonical_amplicon>AACATACTTTTGTAATTTCAGTTCCTTAGTTTTTGTTTAAAACTGAAATACGTTACAGATTTGAATTCAGCGCAAAAAATGCTTGAAAATGAGTATAAACACGACTAGGTTCTGAAAAATTTGCAGTTTTTTTGACTTTTGGGTCCAAAAAATGTGTAAACTGGCTCTAACTCGCTTAGGAATTGTACAAATCGAAAAAATTCAAACGGCATTGTATTTGGCAAGTCAAGAACTTTTCAAACGAACCTAATCACGGCTAGGTTCTGTTAAGTTCCATTTTCCGACGCGTCGCGGTCGTGCGTAGCGTGCTTAAAGAAATTTCAAAGTGGGCGAAGCTCAGTCGAGTTTAGGCTCATTTTGAAGCACTAGACAAGACAAACACAGTGATGTTTGAATTTTTCGATTTAAACAAAATTTTAGCGAGTGAGAGCAGTTTTACACTCTTTCGGGTCCCACCACGAAAAATTCCAACTTTTCCATTTTTTTCCCCAAATCTAGTCGT</canonical_amplicon>
		<polymorphic_amplicon>AACATACTTTTGTAATTTCAGTTCCTTAGTTTTTGTTTAAAACTGAAATACGTTACAGATTTGAATTCAGCGCAAAAAATGCTTGAAAATGAGTATAAACACGACTAGGTTCTGAAAAATTTGCAGTTTTTTTGACTTTTGGGTCCAAAAAATGTGTAAACTGGCTCTAACTCGCTTAGGAATTGTACAAATCGAAAAAATTCAAACGGCATTGTATTTGGCAAGTCAAGAACTTTTCAAACGAACCTAATCACGGCTAGGTTCTGTTAAGTTCCATTTTCCGACGCGTYGCGGTCGTGCGTAGCGTGCTTAAAGAAATTTCAAAGTGGGCGAAGCTCAGTCGAGTTTAGGCTCATTTTGAAGCACTAGACAAGACAAACACAGTGATGTTTGAATTTTTCGATTTAAACAAAATTTTAGCGAGTGAGAGCAGTTTTACACTCTTTCGGGTCCCACCACGAAAAATTCCAACTTTTCCATTTTTTTCCCCAAATCTAGTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24555</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>80624</contig_pos>
        <strand></strand>
        <context>aacaaaattt[T/G]agcgagtgag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AGACAAGACAAACACAGTGATGTTTGAATTTTTCGATTTAAACAAAATTT</left_flank>
        <right_flank>AGCGAGTGAGAGCAGTTTTACACTCTTTCGGGTCCCACCACGAAAAATTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACCTAGTCCTTCTCCGCATTGCATGAATTTCCCGGAAAAATCCACATAGGCTCGACCTTGGGGGCATTTTGGCTCGGCTAAAACATACTTTTGTAATTTCAGTTCCTTAGTTTTTGTTTAAAACTGAAATACGTTACAGATTTGAATTCAGCGCAAAAAATGCTTGAAAATGAGTATAAACACGACTAGGTTCTGAAAAATTTGCAGTTTTTTTGACTTTTGGGTCCAAAAAATGTGTAAACTGGCTCTAACTCGCTTAGGAATTGTACAAATCGAAAAAATTCAAACGGCATTGTATTTGGCAAGTCAAGAACTTTTCAAACGAACCTAATCACGGCTAGGTTCTGTTAAGTTCCATTTTCCGACGCGTCGCGGTCGTGCGTAGCGTGCTTAAAGAAATTTCAAAGTGGGCGAAGCTCAGTCGAGTTTAGGCTCATTTTGAAGCACTAGACAAGACAAACACAGTGATGTTTGAATTTTTCGATTTAAACAAAATTTTAGCGAGTGAGAGCAGTTTTACACTCTTTCGGGTCCCACCACGAAAAATTCCAACTTTTCCATTTTTTTCCCCAAATCTAGTCGTGTTAAAACCTCTATTACTGTATATCTCGTAAAATGCGCTTTAAAATGAGTTCAAACTCGACTAGACTCCGCCCATTTTGAAATTTCACCTTGACACGCGACGCCCGACCGCGATGCACCGTAAAAACCAAAGTGGGCGGAGCCTAGTCGAGTTTGGGCTCATTTTGAAGCTCTGAACAAGACAGATATGACTGTGTTTTTAAAAATTCAAAATTCTCGATTTTTCAGAAGTTACAGCTTAAAAAAAGATTTGTGTCAAAACTGATCTAGCTCGTTTTCTATCGATTTTTCTCGAATTTTTTGCATTTTTTTCCCATTCTCCAAGATTCCATTGCTCACCATTAATATTTTTACAGTAACTCTGACACTCATTCAACGAATTGAATCGATTATTGTTGCCCTGGCATCCAGTGTACA</canonical>
            <polymorphic>CACCTAGTCCTTCTCCGCATTGCATGAATTTCCCGGAAAAATCCACATAGGCTCGACCTTGGGGGCATTTTGGCTCGGCTAAAACATACTTTTGTAATTTCAGTTCCTTAGTTTTTGTTTAAAACTGAAATACGTTACAGATTTGAATTCAGCGCAAAAAATGCTTGAAAATGAGTATAAACACGACTAGGTTCTGAAAAATTTGCAGTTTTTTTGACTTTTGGGTCCAAAAAATGTGTAAACTGGCTCTAACTCGCTTAGGAATTGTACAAATCGAAAAAATTCAAACGGCATTGTATTTGGCAAGTCAAGAACTTTTCAAACGAACCTAATCACGGCTAGGTTCTGTTAAGTTCCATTTTCCGACGCGTCGCGGTCGTGCGTAGCGTGCTTAAAGAAATTTCAAAGTGGGCGAAGCTCAGTCGAGTTTAGGCTCATTTTGAAGCACTAGACAAGACAAACACAGTGATGTTTGAATTTTTCGATTTAAACAAAATTTKAGCGAGTGAGAGCAGTTTTACACTCTTTCGGGTCCCACCACGAAAAATTCCAACTTTTCCATTTTTTTCCCCAAATCTAGTCGTGTTAAAACCTCTATTACTGTATATCTCGTAAAATGCGCTTTAAAATGAGTTCAAACTCGACTAGACTCCGCCCATTTTGAAATTTCACCTTGACACGCGACGCCCGACCGCGATGCACCGTAAAAACCAAAGTGGGCGGAGCCTAGTCGAGTTTGGGCTCATTTTGAAGCTCTGAACAAGACAGATATGACTGTGTTTTTAAAAATTCAAAATTCTCGATTTTTCAGAAGTTACAGCTTAAAAAAAGATTTGTGTCAAAACTGATCTAGCTCGTTTTCTATCGATTTTTCTCGAATTTTTTGCATTTTTTTCCCATTCTCCAAGATTCCATTGCTCACCATTAATATTTTTACAGTAACTCTGACACTCATTCAACGAATTGAATCGATTATTGTTGCCCTGGCATCCAGTGTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACATACTTTTGTAATTTCAGTTCC</pcr_primer_p1>
		<pcr_primer_p2>ACGACTAGATTTGGGGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>502</pcr_amplicon_size>
		<canonical_amplicon>AACATACTTTTGTAATTTCAGTTCCTTAGTTTTTGTTTAAAACTGAAATACGTTACAGATTTGAATTCAGCGCAAAAAATGCTTGAAAATGAGTATAAACACGACTAGGTTCTGAAAAATTTGCAGTTTTTTTGACTTTTGGGTCCAAAAAATGTGTAAACTGGCTCTAACTCGCTTAGGAATTGTACAAATCGAAAAAATTCAAACGGCATTGTATTTGGCAAGTCAAGAACTTTTCAAACGAACCTAATCACGGCTAGGTTCTGTTAAGTTCCATTTTCCGACGCGTCGCGGTCGTGCGTAGCGTGCTTAAAGAAATTTCAAAGTGGGCGAAGCTCAGTCGAGTTTAGGCTCATTTTGAAGCACTAGACAAGACAAACACAGTGATGTTTGAATTTTTCGATTTAAACAAAATTTTAGCGAGTGAGAGCAGTTTTACACTCTTTCGGGTCCCACCACGAAAAATTCCAACTTTTCCATTTTTTTCCCCAAATCTAGTCGT</canonical_amplicon>
		<polymorphic_amplicon>AACATACTTTTGTAATTTCAGTTCCTTAGTTTTTGTTTAAAACTGAAATACGTTACAGATTTGAATTCAGCGCAAAAAATGCTTGAAAATGAGTATAAACACGACTAGGTTCTGAAAAATTTGCAGTTTTTTTGACTTTTGGGTCCAAAAAATGTGTAAACTGGCTCTAACTCGCTTAGGAATTGTACAAATCGAAAAAATTCAAACGGCATTGTATTTGGCAAGTCAAGAACTTTTCAAACGAACCTAATCACGGCTAGGTTCTGTTAAGTTCCATTTTCCGACGCGTCGCGGTCGTGCGTAGCGTGCTTAAAGAAATTTCAAAGTGGGCGAAGCTCAGTCGAGTTTAGGCTCATTTTGAAGCACTAGACAAGACAAACACAGTGATGTTTGAATTTTTCGATTTAAACAAAATTTKAGCGAGTGAGAGCAGTTTTACACTCTTTCGGGTCCCACCACGAAAAATTCCAACTTTTCCATTTTTTTCCCCAAATCTAGTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24556</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>80731</contig_pos>
        <strand></strand>
        <context>attactgtat[A/T]tctcgtaaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCCATTTTTTTCCCCAAATCTAGTCGTGTTAAAACCTCTATTACTGTAT</left_flank>
        <right_flank>TCTCGTAAAATGCGCTTTAAAATGAGTTCAAACTCGACTAGACTCCGCCC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGTTTTTGTTTAAAACTGAAATACGTTACAGATTTGAATTCAGCGCAAAAAATGCTTGAAAATGAGTATAAACACGACTAGGTTCTGAAAAATTTGCAGTTTTTTTGACTTTTGGGTCCAAAAAATGTGTAAACTGGCTCTAACTCGCTTAGGAATTGTACAAATCGAAAAAATTCAAACGGCATTGTATTTGGCAAGTCAAGAACTTTTCAAACGAACCTAATCACGGCTAGGTTCTGTTAAGTTCCATTTTCCGACGCGTCGCGGTCGTGCGTAGCGTGCTTAAAGAAATTTCAAAGTGGGCGAAGCTCAGTCGAGTTTAGGCTCATTTTGAAGCACTAGACAAGACAAACACAGTGATGTTTGAATTTTTCGATTTAAACAAAATTTTAGCGAGTGAGAGCAGTTTTACACTCTTTCGGGTCCCACCACGAAAAATTCCAACTTTTCCATTTTTTTCCCCAAATCTAGTCGTGTTAAAACCTCTATTACTGTATATCTCGTAAAATGCGCTTTAAAATGAGTTCAAACTCGACTAGACTCCGCCCATTTTGAAATTTCACCTTGACACGCGACGCCCGACCGCGATGCACCGTAAAAACCAAAGTGGGCGGAGCCTAGTCGAGTTTGGGCTCATTTTGAAGCTCTGAACAAGACAGATATGACTGTGTTTTTAAAAATTCAAAATTCTCGATTTTTCAGAAGTTACAGCTTAAAAAAAGATTTGTGTCAAAACTGATCTAGCTCGTTTTCTATCGATTTTTCTCGAATTTTTTGCATTTTTTTCCCATTCTCCAAGATTCCATTGCTCACCATTAATATTTTTACAGTAACTCTGACACTCATTCAACGAATTGAATCGATTATTGTTGCCCTGGCATCCAGTGTACAGGAACGATTCGCACGTTTTGGTTTCAGCGTTATACCAGAATTGGCGGACACTCTGTTTGCAGTCGCCAACACGAAGTGGTTCAGTGCACAGGGTTTCTGAAAATTTC</canonical>
            <polymorphic>TTAGTTTTTGTTTAAAACTGAAATACGTTACAGATTTGAATTCAGCGCAAAAAATGCTTGAAAATGAGTATAAACACGACTAGGTTCTGAAAAATTTGCAGTTTTTTTGACTTTTGGGTCCAAAAAATGTGTAAACTGGCTCTAACTCGCTTAGGAATTGTACAAATCGAAAAAATTCAAACGGCATTGTATTTGGCAAGTCAAGAACTTTTCAAACGAACCTAATCACGGCTAGGTTCTGTTAAGTTCCATTTTCCGACGCGTCGCGGTCGTGCGTAGCGTGCTTAAAGAAATTTCAAAGTGGGCGAAGCTCAGTCGAGTTTAGGCTCATTTTGAAGCACTAGACAAGACAAACACAGTGATGTTTGAATTTTTCGATTTAAACAAAATTTTAGCGAGTGAGAGCAGTTTTACACTCTTTCGGGTCCCACCACGAAAAATTCCAACTTTTCCATTTTTTTCCCCAAATCTAGTCGTGTTAAAACCTCTATTACTGTATWTCTCGTAAAATGCGCTTTAAAATGAGTTCAAACTCGACTAGACTCCGCCCATTTTGAAATTTCACCTTGACACGCGACGCCCGACCGCGATGCACCGTAAAAACCAAAGTGGGCGGAGCCTAGTCGAGTTTGGGCTCATTTTGAAGCTCTGAACAAGACAGATATGACTGTGTTTTTAAAAATTCAAAATTCTCGATTTTTCAGAAGTTACAGCTTAAAAAAAGATTTGTGTCAAAACTGATCTAGCTCGTTTTCTATCGATTTTTCTCGAATTTTTTGCATTTTTTTCCCATTCTCCAAGATTCCATTGCTCACCATTAATATTTTTACAGTAACTCTGACACTCATTCAACGAATTGAATCGATTATTGTTGCCCTGGCATCCAGTGTACAGGAACGATTCGCACGTTTTGGTTTCAGCGTTATACCAGAATTGGCGGACACTCTGTTTGCAGTCGCCAACACGAAGTGGTTCAGTGCACAGGGTTTCTGAAAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACATACTTTTGTAATTTCAGTTCC</pcr_primer_p1>
		<pcr_primer_p2>TTTAAGCTGTAACTTCTGAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>744</pcr_amplicon_size>
		<canonical_amplicon>TATCTCGTAAAATGCGCTTTAAAATGAGTTCAAACTCGACTAGACTCCGCCCATTTTGAAATTTCACCTTGACACGCGACGCCCGACCGCGATGCACCGTAAAAACCAAAGTGGGCGGAGCCTAGTCGAGTTTGGGCTCATTTTGAAGCTCTGAACAAGACAGATATGACTGTGTTTTTAAAAATTCAAAATTCTCGATTTTTCAGAAGTTACAGCTTAAA</canonical_amplicon>
		<polymorphic_amplicon>TWTCTCGTAAAATGCGCTTTAAAATGAGTTCAAACTCGACTAGACTCCGCCCATTTTGAAATTTCACCTTGACACGCGACGCCCGACCGCGATGCACCGTAAAAACCAAAGTGGGCGGAGCCTAGTCGAGTTTGGGCTCATTTTGAAGCTCTGAACAAGACAGATATGACTGTGTTTTTAAAAATTCAAAATTCTCGATTTTTCAGAAGTTACAGCTTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24557</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>82302</contig_pos>
        <strand></strand>
        <context>attgaaaatt[G/T]gaaTCTAGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGAGCCTAGTCGTGTTTGGGCTGATTTAGAAGCGCAACACATTGAAAATT</left_flank>
        <right_flank>GAATCTAGCACTGAAAATGTAAGAAAATGAGCCCAAACTCGACAAGGATC</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTACGAAGCCAAATGTGATTATAACAGAAAATTTGCGTTTACTGACCAAGCTTTGGACTTCTAGGTTATTTAACTGTTTCTAGGTCATTCAACCCCTTTTTGGGCCCTTTTAGAATATTTTGAGCCGTTTTTGACAAAATTTTGACAAAATTTTTTTGAAGTCTTGCAGATCAGCTACAGAAATTTTATTTTGGATATTCCGCGCTTAAGAATAAGCTCAAAAACGACCTTAATTGAGCTATTTTGAGAATAGGCTCCAGCCCTTATAAAAGTGGGCGGTGCCCAACAGTTTTTGGGTTGTTTTTTGAGCGTTTTTAACATTGAATTCAAACTTAGCACGCCAATAGCTTCAAAATGAGCCTCAACACGACTAGGTTCCGTTCACATTGATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGCCTTGTGAAAATGTCAAAGTGGGCGGAGCCTAGTCGTGTTTGGGCTGATTTAGAAGCGCAACACATTGAAAATTGGAATCTAGCACTGAAAATGTAAGAAAATGAGCCCAAACTCGACAAGGATCCGTCAACTTCATGGGACCACCAAAAGTGGGCGGAGCCTACTTTCAAGTCTTAAAATTATTCAAAATAAGTCGTGTTTAAGCTCATTTTAAAGCGTTTTTTGAGCTGAACACGAAATAACTCACATCTCGCGCAAAACAGCTGGCAATCGGCTTGATTTTGGAAATTATTGAAATTTCCCAAGAATCCGTTGAATGTGAATGGATGACACTGGCCGTCGGTAGGATTGTAATAGTAGCGAGTGCTATTCCAACAGCATAATTAGCTGTCTCTCCAGTTAACTGATCGAAACGATGCCCGGCGTCGTATGGTGTACTTCTAAGGGGGTCTTTGAATCGGGCACCTGCTTCGGAGCATATTGATTCTGAAAATTTCCGGGAAATAATTGATTTTTCAGCAATTCAAAGTATCTAGCTGTTTTTAGTAGGTTTTTAGCTTCAAAATGAGCCTAA</canonical>
            <polymorphic>TCTTACGAAGCCAAATGTGATTATAACAGAAAATTTGCGTTTACTGACCAAGCTTTGGACTTCTAGGTTATTTAACTGTTTCTAGGTCATTCAACCCCTTTTTGGGCCCTTTTAGAATATTTTGAGCCGTTTTTGACAAAATTTTGACAAAATTTTTTTGAAGTCTTGCAGATCAGCTACAGAAATTTTATTTTGGATATTCCGCGCTTAAGAATAAGCTCAAAAACGACCTTAATTGAGCTATTTTGAGAATAGGCTCCAGCCCTTATAAAAGTGGGCGGTGCCCAACAGTTTTTGGGTTGTTTTTTGAGCGTTTTTAACATTGAATTCAAACTTAGCACGCCAATAGCTTCAAAATGAGCCTCAACACGACTAGGTTCCGTTCACATTGATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGCCTTGTGAAAATGTCAAAGTGGGCGGAGCCTAGTCGTGTTTGGGCTGATTTAGAAGCGCAACACATTGAAAATTKGAATCTAGCACTGAAAATGTAAGAAAATGAGCCCAAACTCGACAAGGATCCGTCAACTTCATGGGACCACCAAAAGTGGGCGGAGCCTACTTTCAAGTCTTAAAATTATTCAAAATAAGTCGTGTTTAAGCTCATTTTAAAGCGTTTTTTGAGCTGAACACGAAATAACTCACATCTCGCGCAAAACAGCTGGCAATCGGCTTGATTTTGGAAATTATTGAAATTTCCCAAGAATCCGTTGAATGTGAATGGATGACACTGGCCGTCGGTAGGATTGTAATAGTAGCGAGTGCTATTCCAACAGCATAATTAGCTGTCTCTCCAGTTAACTGATCGAAACGATGCCCGGCGTCGTATGGTGTACTTCTAAGGGGGTCTTTGAATCGGGCACCTGCTTCGGAGCATATTGATTCTGAAAATTTCCGGGAAATAATTGATTTTTCAGCAATTCAAAGTATCTAGCTGTTTTTAGTAGGTTTTTAGCTTCAAAATGAGCCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACGACCTTAATTGAGCTAT</pcr_primer_p1>
		<pcr_primer_p2>TTTCAATAATTTCCAAAATCAAG</pcr_primer_p2>
		<pcr_amplicon_size>502</pcr_amplicon_size>
		<canonical_amplicon>AAAAACGACCTTAATTGAGCTATTTTGAGAATAGGCTCCAGCCCTTATAAAAGTGGGCGGTGCCCAACAGTTTTTGGGTTGTTTTTTGAGCGTTTTTAACATTGAATTCAAACTTAGCACGCCAATAGCTTCAAAATGAGCCTCAACACGACTAGGTTCCGTTCACATTGATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGCCTTGTGAAAATGTCAAAGTGGGCGGAGCCTAGTCGTGTTTGGGCTGATTTAGAAGCGCAACACATTGAAAATTGGAATCTAGCACTGAAAATGTAAGAAAATGAGCCCAAACTCGACAAGGATCCGTCAACTTCATGGGACCACCAAAAGTGGGCGGAGCCTACTTTCAAGTCTTAAAATTATTCAAAATAAGTCGTGTTTAAGCTCATTTTAAAGCGTTTTTTGAGCTGAACACGAAATAACTCACATCTCGCGCAAAACAGCTGGCAATCGGCTTGATTTTGGAAATTATTGAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAACGACCTTAATTGAGCTATTTTGAGAATAGGCTCCAGCCCTTATAAAAGTGGGCGGTGCCCAACAGTTTTTGGGTTGTTTTTTGAGCGTTTTTAACATTGAATTCAAACTTAGCACGCCAATAGCTTCAAAATGAGCCTCAACACGACTAGGTTCCGTTCACATTGATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGCCTTGTGAAAATGTCAAAGTGGGCGGAGCCTAGTCGTGTTTGGGCTGATTTAGAAGCGCAACACATTGAAAATTKGAATCTAGCACTGAAAATGTAAGAAAATGAGCCCAAACTCGACAAGGATCCGTCAACTTCATGGGACCACCAAAAGTGGGCGGAGCCTACTTTCAAGTCTTAAAATTATTCAAAATAAGTCGTGTTTAAGCTCATTTTAAAGCGTTTTTTGAGCTGAACACGAAATAACTCACATCTCGCGCAAAACAGCTGGCAATCGGCTTGATTTTGGAAATTATTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24558</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>82420</contig_pos>
        <strand></strand>
        <context>attcaaaata[A/G]gtcgtgttta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACCAAAAGTGGGCGGAGCCTACTTTCAAGTCTTAAAATTATTCAAAATA</left_flank>
        <right_flank>GTCGTGTTTAAGCTCATTTTAAAGCGTTTTTTGAGCTGAACACGAAATAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTGAGCCGTTTTTGACAAAATTTTGACAAAATTTTTTTGAAGTCTTGCAGATCAGCTACAGAAATTTTATTTTGGATATTCCGCGCTTAAGAATAAGCTCAAAAACGACCTTAATTGAGCTATTTTGAGAATAGGCTCCAGCCCTTATAAAAGTGGGCGGTGCCCAACAGTTTTTGGGTTGTTTTTTGAGCGTTTTTAACATTGAATTCAAACTTAGCACGCCAATAGCTTCAAAATGAGCCTCAACACGACTAGGTTCCGTTCACATTGATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGCCTTGTGAAAATGTCAAAGTGGGCGGAGCCTAGTCGTGTTTGGGCTGATTTAGAAGCGCAACACATTGAAAATTGGAATCTAGCACTGAAAATGTAAGAAAATGAGCCCAAACTCGACAAGGATCCGTCAACTTCATGGGACCACCAAAAGTGGGCGGAGCCTACTTTCAAGTCTTAAAATTATTCAAAATAAGTCGTGTTTAAGCTCATTTTAAAGCGTTTTTTGAGCTGAACACGAAATAACTCACATCTCGCGCAAAACAGCTGGCAATCGGCTTGATTTTGGAAATTATTGAAATTTCCCAAGAATCCGTTGAATGTGAATGGATGACACTGGCCGTCGGTAGGATTGTAATAGTAGCGAGTGCTATTCCAACAGCATAATTAGCTGTCTCTCCAGTTAACTGATCGAAACGATGCCCGGCGTCGTATGGTGTACTTCTAAGGGGGTCTTTGAATCGGGCACCTGCTTCGGAGCATATTGATTCTGAAAATTTCCGGGAAATAATTGATTTTTCAGCAATTCAAAGTATCTAGCTGTTTTTAGTAGGTTTTTAGCTTCAAAATGAGCCTAAACACGACTAGATTCCCTTCATTTTGATTTTTCAGGCGCGTCGCGGTCGTGCGTCGCGTGCCTAGGTGAAATTTCAAAGTGGGCCGAGCCTAGTCGTGTTTGGGCTCATTTTGAAGCTC</canonical>
            <polymorphic>ATTTTGAGCCGTTTTTGACAAAATTTTGACAAAATTTTTTTGAAGTCTTGCAGATCAGCTACAGAAATTTTATTTTGGATATTCCGCGCTTAAGAATAAGCTCAAAAACGACCTTAATTGAGCTATTTTGAGAATAGGCTCCAGCCCTTATAAAAGTGGGCGGTGCCCAACAGTTTTTGGGTTGTTTTTTGAGCGTTTTTAACATTGAATTCAAACTTAGCACGCCAATAGCTTCAAAATGAGCCTCAACACGACTAGGTTCCGTTCACATTGATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGCCTTGTGAAAATGTCAAAGTGGGCGGAGCCTAGTCGTGTTTGGGCTGATTTAGAAGCGCAACACATTGAAAATTGGAATCTAGCACTGAAAATGTAAGAAAATGAGCCCAAACTCGACAAGGATCCGTCAACTTCATGGGACCACCAAAAGTGGGCGGAGCCTACTTTCAAGTCTTAAAATTATTCAAAATARGTCGTGTTTAAGCTCATTTTAAAGCGTTTTTTGAGCTGAACACGAAATAACTCACATCTCGCGCAAAACAGCTGGCAATCGGCTTGATTTTGGAAATTATTGAAATTTCCCAAGAATCCGTTGAATGTGAATGGATGACACTGGCCGTCGGTAGGATTGTAATAGTAGCGAGTGCTATTCCAACAGCATAATTAGCTGTCTCTCCAGTTAACTGATCGAAACGATGCCCGGCGTCGTATGGTGTACTTCTAAGGGGGTCTTTGAATCGGGCACCTGCTTCGGAGCATATTGATTCTGAAAATTTCCGGGAAATAATTGATTTTTCAGCAATTCAAAGTATCTAGCTGTTTTTAGTAGGTTTTTAGCTTCAAAATGAGCCTAAACACGACTAGATTCCCTTCATTTTGATTTTTCAGGCGCGTCGCGGTCGTGCGTCGCGTGCCTAGGTGAAATTTCAAAGTGGGCCGAGCCTAGTCGTGTTTGGGCTCATTTTGAAGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCACTGAAAATGTAAGAAAATG</pcr_primer_p1>
		<pcr_primer_p2>ATTCACATTCAACGGATTCTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AGCACTGAAAATGTAAGAAAATGAGCCCAAACTCGACAAGGATCCGTCAACTTCATGGGACCACCAAAAGTGGGCGGAGCCTACTTTCAAGTCTTAAAATTATTCAAAATAAGTCGTGTTTAAGCTCATTTTAAAGCGTTTTTTGAGCTGAACACGAAATAACTCACATCTCGCGCAAAACAGCTGGCAATCGGCTTGATTTTGGAAATTATTGAAATTTCCCAAGAATCCGTTGAATGTGAAT</canonical_amplicon>
		<polymorphic_amplicon>AGCACTGAAAATGTAAGAAAATGAGCCCAAACTCGACAAGGATCCGTCAACTTCATGGGACCACCAAAAGTGGGCGGAGCCTACTTTCAAGTCTTAAAATTATTCAAAATARGTCGTGTTTAAGCTCATTTTAAAGCGTTTTTTGAGCTGAACACGAAATAACTCACATCTCGCGCAAAACAGCTGGCAATCGGCTTGATTTTGGAAATTATTGAAATTTCCCAAGAATCCGTTGAATGTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24559</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>109792</contig_pos>
        <strand>+</strand>
        <context>ACAATCTAAA[C/G]AACTAATAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGAAGGATGAGGAGGTTGAGAAAATGTTGGAATAGATGGAACAATCTAAA</left_flank>
        <right_flank>AACTAATAAATCAATAATTTCTTCTTTCAAAGGCTCCAAAAATGTGATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATCAGATTTAACCTGTGATGTGCTTCAAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTGAGATTTCGCTTAGACAGTTTGTCCTAAAAAAAAAATTATTTTCTAGTCGAGACCCAAATTTTGAAAACTTTGATTTTTCAACATTCATTGAATTTAGGCTCATTTTAAAGCTCTATTTAAGACAAATCGATTGGTGTAATTTTTATTGATCTATCTCTCAAACTAAGCGGGTTATGGTCGTTTTAATCCTAGGATTACTGTAGTTTCTGGAACATCCCTCAATATGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTGAAGCGCATGACAAGACAAGTTTGATAAACATGTTAAACAACTGATATCTTATCATGTTTATCAATAAAATCAACAGAAGGAATTTTTCCAGAGAGCCGACGAAGCAATGGACGACATCAAGGAAGAGAAGGATGAGGAGGTTGAGAAAATGTTGGAATAGATGGAACAATCTAAAAAACTAATAAATCAATAATTTCTTCTTTCAAAGGCTCCAAAAATGTGATTTCTTTGGAAAAATTTTTCTGAAAATTTTCAAAAAAATTTTTTTTTCCAAAATTCTCTGATATTATCCCCCAACTGGTCCAATGTGTTATTTTTTTGTAGTTTTTTTATCTTTTACATCACAAATTTTAAGATATTCCATATTTTTCGAGTATTACTGTACTTTTTTTTCTAGAATTTTCCTTTTTTTTCTCACACAAATCCATTTTGCTCCATTTTCCCCATATTTTTGTCTATTTTACTAACTTGTTTCAATTCCTCTGTTTTTTCATTTTTTCCGACATGTGATTAATTACAGACGCAATAAGTTTGTTTGATAAAAAAATTTGTTTTTGAAATTTTTTTCTTCTTTTCAGCGAAAATGAGATTTCAGCTTGAATTAGAATAGTAAAAAACATTTTCAATAAGTTTCCCTTACAGCGAGCTTCAAAATGAGCCCAAACATGACTAGGCT</canonical>
            <polymorphic>TCATCAGATTTAACCTGTGATGTGCTTCAAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTGAGATTTCGCTTAGACAGTTTGTCCTAAAAAAAAAATTATTTTCTAGTCGAGACCCAAATTTTGAAAACTTTGATTTTTCAACATTCATTGAATTTAGGCTCATTTTAAAGCTCTATTTAAGACAAATCGATTGGTGTAATTTTTATTGATCTATCTCTCAAACTAAGCGGGTTATGGTCGTTTTAATCCTAGGATTACTGTAGTTTCTGGAACATCCCTCAATATGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTGAAGCGCATGACAAGACAAGTTTGATAAACATGTTAAACAACTGATATCTTATCATGTTTATCAATAAAATCAACAGAAGGAATTTTTCCAGAGAGCCGACGAAGCAATGGACGACATCAAGGAAGAGAAGGATGAGGAGGTTGAGAAAATGTTGGAATAGATGGAACAATCTAAASAACTAATAAATCAATAATTTCTTCTTTCAAAGGCTCCAAAAATGTGATTTCTTTGGAAAAATTTTTCTGAAAATTTTCAAAAAAATTTTTTTTTCCAAAATTCTCTGATATTATCCCCCAACTGGTCCAATGTGTTATTTTTTTGTAGTTTTTTTATCTTTTACATCACAAATTTTAAGATATTCCATATTTTTCGAGTATTACTGTACTTTTTTTTCTAGAATTTTCCTTTTTTTTCTCACACAAATCCATTTTGCTCCATTTTCCCCATATTTTTGTCTATTTTACTAACTTGTTTCAATTCCTCTGTTTTTTCATTTTTTCCGACATGTGATTAATTACAGACGCAATAAGTTTGTTTGATAAAAAAATTTGTTTTTGAAATTTTTTTCTTCTTTTCAGCGAAAATGAGATTTCAGCTTGAATTAGAATAGTAAAAAACATTTTCAATAAGTTTCCCTTACAGCGAGCTTCAAAATGAGCCCAAACATGACTAGGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATGTTTATCAATAAAATCAACAG</pcr_primer_p1>
		<pcr_primer_p2>GGGGATAATATCAGAGAATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TCATGTTTATCAATAAAATCAACAGAAGGAATTTTTCCAGAGAGCCGACGAAGCAATGGACGACATCAAGGAAGAGAAGGATGAGGAGGTTGAGAAAATGTTGGAATAGATGGAACAATCTAAAAAACTAATAAATCAATAATTTCTTCTTTCAAAGGCTCCAAAAATGTGATTTCTTTGGAAAAATTTTTCTGAAAATTTTCAAAAAAATTTTTTTTTCCAAAATTCTCTGATATTATCCCC</canonical_amplicon>
		<polymorphic_amplicon>TCATGTTTATCAATAAAATCAACAGAAGGAATTTTTCCAGAGAGCCGACGAAGCAATGGACGACATCAAGGAAGAGAAGGATGAGGAGGTTGAGAAAATGTTGGAATAGATGGAACAATCTAAASAACTAATAAATCAATAATTTCTTCTTTCAAAGGCTCCAAAAATGTGATTTCTTTGGAAAAATTTTTCTGAAAATTTTCAAAAAAATTTTTTTTTCCAAAATTCTCTGATATTATCCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24560</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>109843</contig_pos>
        <strand></strand>
        <context>AATGTGATTT[C/G]TTTGGAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AACTAATAAATCAATAATTTCTTCTTTCAAAGGCTCCAAAAATGTGATTT</left_flank>
        <right_flank>TTTGGAAAAATTTTTCTGAAAATTTTCAAAAAAATTTTTTTTTCCAAAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCCGCCCACTTTGAGATTTCGCTTAGACAGTTTGTCCTAAAAAAAAAATTATTTTCTAGTCGAGACCCAAATTTTGAAAACTTTGATTTTTCAACATTCATTGAATTTAGGCTCATTTTAAAGCTCTATTTAAGACAAATCGATTGGTGTAATTTTTATTGATCTATCTCTCAAACTAAGCGGGTTATGGTCGTTTTAATCCTAGGATTACTGTAGTTTCTGGAACATCCCTCAATATGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTGAAGCGCATGACAAGACAAGTTTGATAAACATGTTAAACAACTGATATCTTATCATGTTTATCAATAAAATCAACAGAAGGAATTTTTCCAGAGAGCCGACGAAGCAATGGACGACATCAAGGAAGAGAAGGATGAGGAGGTTGAGAAAATGTTGGAATAGATGGAACAATCTAAAAAACTAATAAATCAATAATTTCTTCTTTCAAAGGCTCCAAAAATGTGATTTCTTTGGAAAAATTTTTCTGAAAATTTTCAAAAAAATTTTTTTTTCCAAAATTCTCTGATATTATCCCCCAACTGGTCCAATGTGTTATTTTTTTGTAGTTTTTTTATCTTTTACATCACAAATTTTAAGATATTCCATATTTTTCGAGTATTACTGTACTTTTTTTTCTAGAATTTTCCTTTTTTTTCTCACACAAATCCATTTTGCTCCATTTTCCCCATATTTTTGTCTATTTTACTAACTTGTTTCAATTCCTCTGTTTTTTCATTTTTTCCGACATGTGATTAATTACAGACGCAATAAGTTTGTTTGATAAAAAAATTTGTTTTTGAAATTTTTTTCTTCTTTTCAGCGAAAATGAGATTTCAGCTTGAATTAGAATAGTAAAAAACATTTTCAATAAGTTTCCCTTACAGCGAGCTTCAAAATGAGCCCAAACATGACTAGGCTCCGCCCATTTTGAAACTTCGTCAAGACACGCGACGCACGACCGCGACGCGA</canonical>
            <polymorphic>GCTCCGCCCACTTTGAGATTTCGCTTAGACAGTTTGTCCTAAAAAAAAAATTATTTTCTAGTCGAGACCCAAATTTTGAAAACTTTGATTTTTCAACATTCATTGAATTTAGGCTCATTTTAAAGCTCTATTTAAGACAAATCGATTGGTGTAATTTTTATTGATCTATCTCTCAAACTAAGCGGGTTATGGTCGTTTTAATCCTAGGATTACTGTAGTTTCTGGAACATCCCTCAATATGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTGAAGCGCATGACAAGACAAGTTTGATAAACATGTTAAACAACTGATATCTTATCATGTTTATCAATAAAATCAACAGAAGGAATTTTTCCAGAGAGCCGACGAAGCAATGGACGACATCAAGGAAGAGAAGGATGAGGAGGTTGAGAAAATGTTGGAATAGATGGAACAATCTAAAAAACTAATAAATCAATAATTTCTTCTTTCAAAGGCTCCAAAAATGTGATTTSTTTGGAAAAATTTTTCTGAAAATTTTCAAAAAAATTTTTTTTTCCAAAATTCTCTGATATTATCCCCCAACTGGTCCAATGTGTTATTTTTTTGTAGTTTTTTTATCTTTTACATCACAAATTTTAAGATATTCCATATTTTTCGAGTATTACTGTACTTTTTTTTCTAGAATTTTCCTTTTTTTTCTCACACAAATCCATTTTGCTCCATTTTCCCCATATTTTTGTCTATTTTACTAACTTGTTTCAATTCCTCTGTTTTTTCATTTTTTCCGACATGTGATTAATTACAGACGCAATAAGTTTGTTTGATAAAAAAATTTGTTTTTGAAATTTTTTTCTTCTTTTCAGCGAAAATGAGATTTCAGCTTGAATTAGAATAGTAAAAAACATTTTCAATAAGTTTCCCTTACAGCGAGCTTCAAAATGAGCCCAAACATGACTAGGCTCCGCCCATTTTGAAACTTCGTCAAGACACGCGACGCACGACCGCGACGCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATGTTTATCAATAAAATCAACAG</pcr_primer_p1>
		<pcr_primer_p2>GGGGATAATATCAGAGAATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TCATGTTTATCAATAAAATCAACAGAAGGAATTTTTCCAGAGAGCCGACGAAGCAATGGACGACATCAAGGAAGAGAAGGATGAGGAGGTTGAGAAAATGTTGGAATAGATGGAACAATCTAAAAAACTAATAAATCAATAATTTCTTCTTTCAAAGGCTCCAAAAATGTGATTTCTTTGGAAAAATTTTTCTGAAAATTTTCAAAAAAATTTTTTTTTCCAAAATTCTCTGATATTATCCCC</canonical_amplicon>
		<polymorphic_amplicon>TCATGTTTATCAATAAAATCAACAGAAGGAATTTTTCCAGAGAGCCGACGAAGCAATGGACGACATCAAGGAAGAGAAGGATGAGGAGGTTGAGAAAATGTTGGAATAGATGGAACAATCTAAAAAACTAATAAATCAATAATTTCTTCTTTCAAAGGCTCCAAAAATGTGATTTSTTTGGAAAAATTTTTCTGAAAATTTTCAAAAAAATTTTTTTTTCCAAAATTCTCTGATATTATCCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24561</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>109930</contig_pos>
        <strand>+</strand>
        <context>CAATGTGTTA[C/T]TTTTTTGTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTTCCAAAATTCTCTGATATTATCCCCCAACTGGTCCAATGTGTTA</left_flank>
        <right_flank>TTTTTTGTAGTTTTTTTATCTTTTACATCACAAATTTTAAGATATTCCAT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTCAACATTCATTGAATTTAGGCTCATTTTAAAGCTCTATTTAAGACAAATCGATTGGTGTAATTTTTATTGATCTATCTCTCAAACTAAGCGGGTTATGGTCGTTTTAATCCTAGGATTACTGTAGTTTCTGGAACATCCCTCAATATGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTGAAGCGCATGACAAGACAAGTTTGATAAACATGTTAAACAACTGATATCTTATCATGTTTATCAATAAAATCAACAGAAGGAATTTTTCCAGAGAGCCGACGAAGCAATGGACGACATCAAGGAAGAGAAGGATGAGGAGGTTGAGAAAATGTTGGAATAGATGGAACAATCTAAAAAACTAATAAATCAATAATTTCTTCTTTCAAAGGCTCCAAAAATGTGATTTCTTTGGAAAAATTTTTCTGAAAATTTTCAAAAAAATTTTTTTTTCCAAAATTCTCTGATATTATCCCCCAACTGGTCCAATGTGTTATTTTTTTGTAGTTTTTTTATCTTTTACATCACAAATTTTAAGATATTCCATATTTTTCGAGTATTACTGTACTTTTTTTTCTAGAATTTTCCTTTTTTTTCTCACACAAATCCATTTTGCTCCATTTTCCCCATATTTTTGTCTATTTTACTAACTTGTTTCAATTCCTCTGTTTTTTCATTTTTTCCGACATGTGATTAATTACAGACGCAATAAGTTTGTTTGATAAAAAAATTTGTTTTTGAAATTTTTTTCTTCTTTTCAGCGAAAATGAGATTTCAGCTTGAATTAGAATAGTAAAAAACATTTTCAATAAGTTTCCCTTACAGCGAGCTTCAAAATGAGCCCAAACATGACTAGGCTCCGCCCATTTTGAAACTTCGTCAAGACACGCGACGCACGACCGCGACGCGACCGAAGAATGAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTTGACAAGCTGAATTCAAATCTGCAAAAATTGC</canonical>
            <polymorphic>ATTTTTCAACATTCATTGAATTTAGGCTCATTTTAAAGCTCTATTTAAGACAAATCGATTGGTGTAATTTTTATTGATCTATCTCTCAAACTAAGCGGGTTATGGTCGTTTTAATCCTAGGATTACTGTAGTTTCTGGAACATCCCTCAATATGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTGAAGCGCATGACAAGACAAGTTTGATAAACATGTTAAACAACTGATATCTTATCATGTTTATCAATAAAATCAACAGAAGGAATTTTTCCAGAGAGCCGACGAAGCAATGGACGACATCAAGGAAGAGAAGGATGAGGAGGTTGAGAAAATGTTGGAATAGATGGAACAATCTAAAAAACTAATAAATCAATAATTTCTTCTTTCAAAGGCTCCAAAAATGTGATTTCTTTGGAAAAATTTTTCTGAAAATTTTCAAAAAAATTTTTTTTTCCAAAATTCTCTGATATTATCCCCCAACTGGTCCAATGTGTTAYTTTTTTGTAGTTTTTTTATCTTTTACATCACAAATTTTAAGATATTCCATATTTTTCGAGTATTACTGTACTTTTTTTTCTAGAATTTTCCTTTTTTTTCTCACACAAATCCATTTTGCTCCATTTTCCCCATATTTTTGTCTATTTTACTAACTTGTTTCAATTCCTCTGTTTTTTCATTTTTTCCGACATGTGATTAATTACAGACGCAATAAGTTTGTTTGATAAAAAAATTTGTTTTTGAAATTTTTTTCTTCTTTTCAGCGAAAATGAGATTTCAGCTTGAATTAGAATAGTAAAAAACATTTTCAATAAGTTTCCCTTACAGCGAGCTTCAAAATGAGCCCAAACATGACTAGGCTCCGCCCATTTTGAAACTTCGTCAAGACACGCGACGCACGACCGCGACGCGACCGAAGAATGAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTTGACAAGCTGAATTCAAATCTGCAAAAATTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGTTGAGAAAATGTTGGAATA</pcr_primer_p1>
		<pcr_primer_p2>AGTACAGTAATACTCGAAAAATATGG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGGTTGAGAAAATGTTGGAATAGATGGAACAATCTAAAAAACTAATAAATCAATAATTTCTTCTTTCAAAGGCTCCAAAAATGTGATTTCTTTGGAAAAATTTTTCTGAAAATTTTCAAAAAAATTTTTTTTTCCAAAATTCTCTGATATTATCCCCCAACTGGTCCAATGTGTTATTTTTTTGTAGTTTTTTTATCTTTTACATCACAAATTTTAAGATATTCCATATTTTTCGAGTATTACTGTACT</canonical_amplicon>
		<polymorphic_amplicon>AGGTTGAGAAAATGTTGGAATAGATGGAACAATCTAAAAAACTAATAAATCAATAATTTCTTCTTTCAAAGGCTCCAAAAATGTGATTTCTTTGGAAAAATTTTTCTGAAAATTTTCAAAAAAATTTTTTTTTCCAAAATTCTCTGATATTATCCCCCAACTGGTCCAATGTGTTAYTTTTTTGTAGTTTTTTTATCTTTTACATCACAAATTTTAAGATATTCCATATTTTTCGAGTATTACTGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24562</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>109947</contig_pos>
        <strand>+</strand>
        <context>GTAGTTTTTT[C/T]AYCTTTTACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGATATTATCCCCCAACTGGTCCAATGTGTTATTTTTTTGTAGTTTTTT</left_flank>
        <right_flank>ATCTTTTACATCACAAATTTTAAGATATTCCATATTTTTCGAGTATTACT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTTAGGCTCATTTTAAAGCTCTATTTAAGACAAATCGATTGGTGTAATTTTTATTGATCTATCTCTCAAACTAAGCGGGTTATGGTCGTTTTAATCCTAGGATTACTGTAGTTTCTGGAACATCCCTCAATATGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTGAAGCGCATGACAAGACAAGTTTGATAAACATGTTAAACAACTGATATCTTATCATGTTTATCAATAAAATCAACAGAAGGAATTTTTCCAGAGAGCCGACGAAGCAATGGACGACATCAAGGAAGAGAAGGATGAGGAGGTTGAGAAAATGTTGGAATAGATGGAACAATCTAAAAAACTAATAAATCAATAATTTCTTCTTTCAAAGGCTCCAAAAATGTGATTTCTTTGGAAAAATTTTTCTGAAAATTTTCAAAAAAATTTTTTTTTCCAAAATTCTCTGATATTATCCCCCAACTGGTCCAATGTGTTATTTTTTTGTAGTTTTTTTATCTTTTACATCACAAATTTTAAGATATTCCATATTTTTCGAGTATTACTGTACTTTTTTTTCTAGAATTTTCCTTTTTTTTCTCACACAAATCCATTTTGCTCCATTTTCCCCATATTTTTGTCTATTTTACTAACTTGTTTCAATTCCTCTGTTTTTTCATTTTTTCCGACATGTGATTAATTACAGACGCAATAAGTTTGTTTGATAAAAAAATTTGTTTTTGAAATTTTTTTCTTCTTTTCAGCGAAAATGAGATTTCAGCTTGAATTAGAATAGTAAAAAACATTTTCAATAAGTTTCCCTTACAGCGAGCTTCAAAATGAGCCCAAACATGACTAGGCTCCGCCCATTTTGAAACTTCGTCAAGACACGCGACGCACGACCGCGACGCGACCGAAGAATGAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTTGACAAGCTGAATTCAAATCTGCAAAAATTGCTAAATTTGAGTGTAAAA</canonical>
            <polymorphic>GAATTTAGGCTCATTTTAAAGCTCTATTTAAGACAAATCGATTGGTGTAATTTTTATTGATCTATCTCTCAAACTAAGCGGGTTATGGTCGTTTTAATCCTAGGATTACTGTAGTTTCTGGAACATCCCTCAATATGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTGAAGCGCATGACAAGACAAGTTTGATAAACATGTTAAACAACTGATATCTTATCATGTTTATCAATAAAATCAACAGAAGGAATTTTTCCAGAGAGCCGACGAAGCAATGGACGACATCAAGGAAGAGAAGGATGAGGAGGTTGAGAAAATGTTGGAATAGATGGAACAATCTAAAAAACTAATAAATCAATAATTTCTTCTTTCAAAGGCTCCAAAAATGTGATTTCTTTGGAAAAATTTTTCTGAAAATTTTCAAAAAAATTTTTTTTTCCAAAATTCTCTGATATTATCCCCCAACTGGTCCAATGTGTTATTTTTTTGTAGTTTTTTYATCTTTTACATCACAAATTTTAAGATATTCCATATTTTTCGAGTATTACTGTACTTTTTTTTCTAGAATTTTCCTTTTTTTTCTCACACAAATCCATTTTGCTCCATTTTCCCCATATTTTTGTCTATTTTACTAACTTGTTTCAATTCCTCTGTTTTTTCATTTTTTCCGACATGTGATTAATTACAGACGCAATAAGTTTGTTTGATAAAAAAATTTGTTTTTGAAATTTTTTTCTTCTTTTCAGCGAAAATGAGATTTCAGCTTGAATTAGAATAGTAAAAAACATTTTCAATAAGTTTCCCTTACAGCGAGCTTCAAAATGAGCCCAAACATGACTAGGCTCCGCCCATTTTGAAACTTCGTCAAGACACGCGACGCACGACCGCGACGCGACCGAAGAATGAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTTGACAAGCTGAATTCAAATCTGCAAAAATTGCTAAATTTGAGTGTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTGATATTATCCCCCAACT</pcr_primer_p1>
		<pcr_primer_p2>GTAATTAATCACATGTCGGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CTCTGATATTATCCCCCAACTGGTCCAATGTGTTATTTTTTTGTAGTTTTTTTATCTTTTACATCACAAATTTTAAGATATTCCATATTTTTCGAGTATTACTGTACTTTTTTTTCTAGAATTTTCCTTTTTTTTCTCACACAAATCCATTTTGCTCCATTTTCCCCATATTTTTGTCTATTTTACTAACTTGTTTCAATTCCTCTGTTTTTTCATTTTTTCCGACATGTGATTAATTAC</canonical_amplicon>
		<polymorphic_amplicon>CTCTGATATTATCCCCCAACTGGTCCAATGTGTTATTTTTTTGTAGTTTTTTYATCTTTTACATCACAAATTTTAAGATATTCCATATTTTTCGAGTATTACTGTACTTTTTTTTCTAGAATTTTCCTTTTTTTTCTCACACAAATCCATTTTGCTCCATTTTCCCCATATTTTTGTCTATTTTACTAACTTGTTTCAATTCCTCTGTTTTTTCATTTTTTCCGACATGTGATTAATTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24563</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>109949</contig_pos>
        <strand>+</strand>
        <context>AGTTTTTTYA[C/T]CTTTTACATC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATATTATCCCCCAACTGGTCCAATGTGTTATTTTTTTGTAGTTTTTTTA</left_flank>
        <right_flank>CTTTTACATCACAAATTTTAAGATATTCCATATTTTTCGAGTATTACTGT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTAGGCTCATTTTAAAGCTCTATTTAAGACAAATCGATTGGTGTAATTTTTATTGATCTATCTCTCAAACTAAGCGGGTTATGGTCGTTTTAATCCTAGGATTACTGTAGTTTCTGGAACATCCCTCAATATGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTGAAGCGCATGACAAGACAAGTTTGATAAACATGTTAAACAACTGATATCTTATCATGTTTATCAATAAAATCAACAGAAGGAATTTTTCCAGAGAGCCGACGAAGCAATGGACGACATCAAGGAAGAGAAGGATGAGGAGGTTGAGAAAATGTTGGAATAGATGGAACAATCTAAAAAACTAATAAATCAATAATTTCTTCTTTCAAAGGCTCCAAAAATGTGATTTCTTTGGAAAAATTTTTCTGAAAATTTTCAAAAAAATTTTTTTTTCCAAAATTCTCTGATATTATCCCCCAACTGGTCCAATGTGTTATTTTTTTGTAGTTTTTTTATCTTTTACATCACAAATTTTAAGATATTCCATATTTTTCGAGTATTACTGTACTTTTTTTTCTAGAATTTTCCTTTTTTTTCTCACACAAATCCATTTTGCTCCATTTTCCCCATATTTTTGTCTATTTTACTAACTTGTTTCAATTCCTCTGTTTTTTCATTTTTTCCGACATGTGATTAATTACAGACGCAATAAGTTTGTTTGATAAAAAAATTTGTTTTTGAAATTTTTTTCTTCTTTTCAGCGAAAATGAGATTTCAGCTTGAATTAGAATAGTAAAAAACATTTTCAATAAGTTTCCCTTACAGCGAGCTTCAAAATGAGCCCAAACATGACTAGGCTCCGCCCATTTTGAAACTTCGTCAAGACACGCGACGCACGACCGCGACGCGACCGAAGAATGAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTTGACAAGCTGAATTCAAATCTGCAAAAATTGCTAAATTTGAGTGTAAAATA</canonical>
            <polymorphic>ATTTAGGCTCATTTTAAAGCTCTATTTAAGACAAATCGATTGGTGTAATTTTTATTGATCTATCTCTCAAACTAAGCGGGTTATGGTCGTTTTAATCCTAGGATTACTGTAGTTTCTGGAACATCCCTCAATATGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTGAAGCGCATGACAAGACAAGTTTGATAAACATGTTAAACAACTGATATCTTATCATGTTTATCAATAAAATCAACAGAAGGAATTTTTCCAGAGAGCCGACGAAGCAATGGACGACATCAAGGAAGAGAAGGATGAGGAGGTTGAGAAAATGTTGGAATAGATGGAACAATCTAAAAAACTAATAAATCAATAATTTCTTCTTTCAAAGGCTCCAAAAATGTGATTTCTTTGGAAAAATTTTTCTGAAAATTTTCAAAAAAATTTTTTTTTCCAAAATTCTCTGATATTATCCCCCAACTGGTCCAATGTGTTATTTTTTTGTAGTTTTTTTAYCTTTTACATCACAAATTTTAAGATATTCCATATTTTTCGAGTATTACTGTACTTTTTTTTCTAGAATTTTCCTTTTTTTTCTCACACAAATCCATTTTGCTCCATTTTCCCCATATTTTTGTCTATTTTACTAACTTGTTTCAATTCCTCTGTTTTTTCATTTTTTCCGACATGTGATTAATTACAGACGCAATAAGTTTGTTTGATAAAAAAATTTGTTTTTGAAATTTTTTTCTTCTTTTCAGCGAAAATGAGATTTCAGCTTGAATTAGAATAGTAAAAAACATTTTCAATAAGTTTCCCTTACAGCGAGCTTCAAAATGAGCCCAAACATGACTAGGCTCCGCCCATTTTGAAACTTCGTCAAGACACGCGACGCACGACCGCGACGCGACCGAAGAATGAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTTGACAAGCTGAATTCAAATCTGCAAAAATTGCTAAATTTGAGTGTAAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTATCCCCCAACTGGTC</pcr_primer_p1>
		<pcr_primer_p2>AACAAACTTATTGCGTCTGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ATATTATCCCCCAACTGGTCCAATGTGTTATTTTTTTGTAGTTTTTTTATCTTTTACATCACAAATTTTAAGATATTCCATATTTTTCGAGTATTACTGTACTTTTTTTTCTAGAATTTTCCTTTTTTTTCTCACACAAATCCATTTTGCTCCATTTTCCCCATATTTTTGTCTATTTTACTAACTTGTTTCAATTCCTCTGTTTTTTCATTTTTTCCGACATGTGATTAATTACAGACGCAATAAGTTTGTT</canonical_amplicon>
		<polymorphic_amplicon>ATATTATCCCCCAACTGGTCCAATGTGTTATTTTTTTGTAGTTTTTTTAYCTTTTACATCACAAATTTTAAGATATTCCATATTTTTCGAGTATTACTGTACTTTTTTTTCTAGAATTTTCCTTTTTTTTCTCACACAAATCCATTTTGCTCCATTTTCCCCATATTTTTGTCTATTTTACTAACTTGTTTCAATTCCTCTGTTTTTTCATTTTTTCCGACATGTGATTAATTACAGACGCAATAAGTTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24564</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>110082</contig_pos>
        <strand></strand>
        <context>CTATTTTACT[A/T]ACTTGTTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CACACAAATCCATTTTGCTCCATTTTCCCCATATTTTTGTCTATTTTACT</left_flank>
        <right_flank>ACTTGTTTCAATTCCTCTGTTTTTTCATTTTTTCCGACATGTGATTAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTGAAGCGCATGACAAGACAAGTTTGATAAACATGTTAAACAACTGATATCTTATCATGTTTATCAATAAAATCAACAGAAGGAATTTTTCCAGAGAGCCGACGAAGCAATGGACGACATCAAGGAAGAGAAGGATGAGGAGGTTGAGAAAATGTTGGAATAGATGGAACAATCTAAAAAACTAATAAATCAATAATTTCTTCTTTCAAAGGCTCCAAAAATGTGATTTCTTTGGAAAAATTTTTCTGAAAATTTTCAAAAAAATTTTTTTTTCCAAAATTCTCTGATATTATCCCCCAACTGGTCCAATGTGTTATTTTTTTGTAGTTTTTTTATCTTTTACATCACAAATTTTAAGATATTCCATATTTTTCGAGTATTACTGTACTTTTTTTTCTAGAATTTTCCTTTTTTTTCTCACACAAATCCATTTTGCTCCATTTTCCCCATATTTTTGTCTATTTTACTAACTTGTTTCAATTCCTCTGTTTTTTCATTTTTTCCGACATGTGATTAATTACAGACGCAATAAGTTTGTTTGATAAAAAAATTTGTTTTTGAAATTTTTTTCTTCTTTTCAGCGAAAATGAGATTTCAGCTTGAATTAGAATAGTAAAAAACATTTTCAATAAGTTTCCCTTACAGCGAGCTTCAAAATGAGCCCAAACATGACTAGGCTCCGCCCATTTTGAAACTTCGTCAAGACACGCGACGCACGACCGCGACGCGACCGAAGAATGAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTTGACAAGCTGAATTCAAATCTGCAAAAATTGCTAAATTTGAGTGTAAAATAACCAAGTGACGGCGGGTTTGTTTTTCCAACACTTCTGAAAAACCAAGATTTTCAGATTCTCACACCTTCAAAAAACCTTTTTTTTTTGGATTTTTGAACTATTTGATTCTTTTGTTAATGCGTTTTTTTCTAG</canonical>
            <polymorphic>TGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTGAAGCGCATGACAAGACAAGTTTGATAAACATGTTAAACAACTGATATCTTATCATGTTTATCAATAAAATCAACAGAAGGAATTTTTCCAGAGAGCCGACGAAGCAATGGACGACATCAAGGAAGAGAAGGATGAGGAGGTTGAGAAAATGTTGGAATAGATGGAACAATCTAAAAAACTAATAAATCAATAATTTCTTCTTTCAAAGGCTCCAAAAATGTGATTTCTTTGGAAAAATTTTTCTGAAAATTTTCAAAAAAATTTTTTTTTCCAAAATTCTCTGATATTATCCCCCAACTGGTCCAATGTGTTATTTTTTTGTAGTTTTTTTATCTTTTACATCACAAATTTTAAGATATTCCATATTTTTCGAGTATTACTGTACTTTTTTTTCTAGAATTTTCCTTTTTTTTCTCACACAAATCCATTTTGCTCCATTTTCCCCATATTTTTGTCTATTTTACTWACTTGTTTCAATTCCTCTGTTTTTTCATTTTTTCCGACATGTGATTAATTACAGACGCAATAAGTTTGTTTGATAAAAAAATTTGTTTTTGAAATTTTTTTCTTCTTTTCAGCGAAAATGAGATTTCAGCTTGAATTAGAATAGTAAAAAACATTTTCAATAAGTTTCCCTTACAGCGAGCTTCAAAATGAGCCCAAACATGACTAGGCTCCGCCCATTTTGAAACTTCGTCAAGACACGCGACGCACGACCGCGACGCGACCGAAGAATGAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTTGACAAGCTGAATTCAAATCTGCAAAAATTGCTAAATTTGAGTGTAAAATAACCAAGTGACGGCGGGTTTGTTTTTCCAACACTTCTGAAAAACCAAGATTTTCAGATTCTCACACCTTCAAAAAACCTTTTTTTTTTGGATTTTTGAACTATTTGATTCTTTTGTTAATGCGTTTTTTTCTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCATATTTTTCGAGTATTACTGT</pcr_primer_p1>
		<pcr_primer_p2>CTAATTCAAGCTGAAATCTCATT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTCCATATTTTTCGAGTATTACTGTACTTTTTTTTCTAGAATTTTCCTTTTTTTTCTCACACAAATCCATTTTGCTCCATTTTCCCCATATTTTTGTCTATTTTACTAACTTGTTTCAATTCCTCTGTTTTTTCATTTTTTCCGACATGTGATTAATTACAGACGCAATAAGTTTGTTTGATAAAAAAATTTGTTTTTGAAATTTTTTTCTTCTTTTCAGCGAAAATGAGATTTCAGCTTGAATTAG</canonical_amplicon>
		<polymorphic_amplicon>TTCCATATTTTTCGAGTATTACTGTACTTTTTTTTCTAGAATTTTCCTTTTTTTTCTCACACAAATCCATTTTGCTCCATTTTCCCCATATTTTTGTCTATTTTACTWACTTGTTTCAATTCCTCTGTTTTTTCATTTTTTCCGACATGTGATTAATTACAGACGCAATAAGTTTGTTTGATAAAAAAATTTGTTTTTGAAATTTTTTTCTTCTTTTCAGCGAAAATGAGATTTCAGCTTGAATTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24565</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>118695</contig_pos>
        <strand>+</strand>
        <context>ACACACAAAA[A/G]GAGATAAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATAAAACTAAGTGGTTTGGGGGAAGTGTGTGTGACAAGACACACAAAA</left_flank>
        <right_flank>GAGATAAAAGAACACTGAAAAATGGTCCCAGGGGACCAGAAATCTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAATAAACATTTCATCAGTTGATTACTTTTTGATATCTTTTACAAGAACTGAGATATACGGGCTAAAAGTTACAGAAGAGCCGTTTTCGACCTGTTTCTGATCTTTTTCTCATATTTCTTTGAGAATTTCTTATCAGCTCTGTTTCTTATCAGTTTCACAGATATTTTTAAAATTTTGAGTCTCTAAAGTTGTTAACTGATAAAATATTTATCATAATATTAGCAAACATTTATCAGTTGATTACTTTTTGATATCTTTTACAGTAACCAAGATAATTAAACTCAAAGTTAAAGTTAGTTTGATTAGTTTAGAGCCATTTTTGGCCCGTTCTTGATCCGTTCCTCATCATTTTTGAGTTTTTCTTATCACTCTTATTTGTCTATCAATTATATATACATATATAATTTTTTGTGATTTTGAAACTCTAAAACCCCAAAAAAAGGAGCTCATAAAACTAAGTGGTTTGGGGGAAGTGTGTGTGACAAGACACACAAAAAGAGATAAAAGAACACTGAAAAATGGTCCCAGGGGACCAGAAATCTTTTTTTTTTTGAGGCTCGAGAGCTTGAAAAGGGTCACAACACATACAACTATATGATTTGGGTTAAAGGACTGGAATAAAAAAAAACTTTTGAAAAAATTTTTTTTTGAAAATTTTCAAAATCTCATAACTGGACTTAAAATGACTCTAATCAACTGGAATTTTCAGATTTTTCATATTTTTCAAATTTCTAACAATTTAAAAACAATCTAGAACAGTTTTCTAGCTGAACAACTGGATTTTATAATTTTCAAAAGATGAAAAACTAAAATTCCCTTTAAATCCCTTAAAATCCCTTTAACTTGGCTTAAAATCACTTATTTTTCCCCAATTTTATGTCAACCGTAACCCAATTTTTTCGCAGGATCAACGAAACAACCTGGCTACCGTATCCGCGTATTTCGACGTTCACTGGCAGGACGATTTCATAAAATGGAAGCCAGAGATTTTCGGAGG</canonical>
            <polymorphic>TATAATAAACATTTCATCAGTTGATTACTTTTTGATATCTTTTACAAGAACTGAGATATACGGGCTAAAAGTTACAGAAGAGCCGTTTTCGACCTGTTTCTGATCTTTTTCTCATATTTCTTTGAGAATTTCTTATCAGCTCTGTTTCTTATCAGTTTCACAGATATTTTTAAAATTTTGAGTCTCTAAAGTTGTTAACTGATAAAATATTTATCATAATATTAGCAAACATTTATCAGTTGATTACTTTTTGATATCTTTTACAGTAACCAAGATAATTAAACTCAAAGTTAAAGTTAGTTTGATTAGTTTAGAGCCATTTTTGGCCCGTTCTTGATCCGTTCCTCATCATTTTTGAGTTTTTCTTATCACTCTTATTTGTCTATCAATTATATATACATATATAATTTTTTGTGATTTTGAAACTCTAAAACCCCAAAAAAAGGAGCTCATAAAACTAAGTGGTTTGGGGGAAGTGTGTGTGACAAGACACACAAAARGAGATAAAAGAACACTGAAAAATGGTCCCAGGGGACCAGAAATCTTTTTTTTTTTGAGGCTCGAGAGCTTGAAAAGGGTCACAACACATACAACTATATGATTTGGGTTAAAGGACTGGAATAAAAAAAAACTTTTGAAAAAATTTTTTTTTGAAAATTTTCAAAATCTCATAACTGGACTTAAAATGACTCTAATCAACTGGAATTTTCAGATTTTTCATATTTTTCAAATTTCTAACAATTTAAAAACAATCTAGAACAGTTTTCTAGCTGAACAACTGGATTTTATAATTTTCAAAAGATGAAAAACTAAAATTCCCTTTAAATCCCTTAAAATCCCTTTAACTTGGCTTAAAATCACTTATTTTTCCCCAATTTTATGTCAACCGTAACCCAATTTTTTCGCAGGATCAACGAAACAACCTGGCTACCGTATCCGCGTATTTCGACGTTCACTGGCAGGACGATTTCATAAAATGGAAGCCAGAGATTTTCGGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAGCTCATAAAACTAAGTGGT</pcr_primer_p1>
		<pcr_primer_p2>GAGTCATTTTAAGTCCAGTTATGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGGAGCTCATAAAACTAAGTGGTTTGGGGGAAGTGTGTGTGACAAGACACACAAAAAGAGATAAAAGAACACTGAAAAATGGTCCCAGGGGACCAGAAATCTTTTTTTTTTTGAGGCTCGAGAGCTTGAAAAGGGTCACAACACATACAACTATATGATTTGGGTTAAAGGACTGGAATAAAAAAAAACTTTTGAAAAAATTTTTTTTTGAAAATTTTCAAAATCTCATAACTGGACTTAAAATGACTC</canonical_amplicon>
		<polymorphic_amplicon>AGGAGCTCATAAAACTAAGTGGTTTGGGGGAAGTGTGTGTGACAAGACACACAAAARGAGATAAAAGAACACTGAAAAATGGTCCCAGGGGACCAGAAATCTTTTTTTTTTTGAGGCTCGAGAGCTTGAAAAGGGTCACAACACATACAACTATATGATTTGGGTTAAAGGACTGGAATAAAAAAAAACTTTTGAAAAAATTTTTTTTTGAAAATTTTCAAAATCTCATAACTGGACTTAAAATGACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24566</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>118787</contig_pos>
        <strand>+</strand>
        <context>CAACACATAC[A/T]ACTATATGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCTTTTTTTTTTTGAGGCTCGAGAGCTTGAAAAGGGTCACAACACATAC</left_flank>
        <right_flank>ACTATATGATTTGGGTTAAAGGACTGGAATAAAAAAAAACTTTTGAAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGTTTCTGATCTTTTTCTCATATTTCTTTGAGAATTTCTTATCAGCTCTGTTTCTTATCAGTTTCACAGATATTTTTAAAATTTTGAGTCTCTAAAGTTGTTAACTGATAAAATATTTATCATAATATTAGCAAACATTTATCAGTTGATTACTTTTTGATATCTTTTACAGTAACCAAGATAATTAAACTCAAAGTTAAAGTTAGTTTGATTAGTTTAGAGCCATTTTTGGCCCGTTCTTGATCCGTTCCTCATCATTTTTGAGTTTTTCTTATCACTCTTATTTGTCTATCAATTATATATACATATATAATTTTTTGTGATTTTGAAACTCTAAAACCCCAAAAAAAGGAGCTCATAAAACTAAGTGGTTTGGGGGAAGTGTGTGTGACAAGACACACAAAAAGAGATAAAAGAACACTGAAAAATGGTCCCAGGGGACCAGAAATCTTTTTTTTTTTGAGGCTCGAGAGCTTGAAAAGGGTCACAACACATACAACTATATGATTTGGGTTAAAGGACTGGAATAAAAAAAAACTTTTGAAAAAATTTTTTTTTGAAAATTTTCAAAATCTCATAACTGGACTTAAAATGACTCTAATCAACTGGAATTTTCAGATTTTTCATATTTTTCAAATTTCTAACAATTTAAAAACAATCTAGAACAGTTTTCTAGCTGAACAACTGGATTTTATAATTTTCAAAAGATGAAAAACTAAAATTCCCTTTAAATCCCTTAAAATCCCTTTAACTTGGCTTAAAATCACTTATTTTTCCCCAATTTTATGTCAACCGTAACCCAATTTTTTCGCAGGATCAACGAAACAACCTGGCTACCGTATCCGCGTATTTCGACGTTCACTGGCAGGACGATTTCATAAAATGGAAGCCAGAGATTTTCGGAGGAATCGAGAGAATATTTGTGCCAATTAAATGGATATGGAAGCCCGAATTCTACATGTATCACTCGGTATACGGTAGAGTTCCTGACTACGCCC</canonical>
            <polymorphic>CCTGTTTCTGATCTTTTTCTCATATTTCTTTGAGAATTTCTTATCAGCTCTGTTTCTTATCAGTTTCACAGATATTTTTAAAATTTTGAGTCTCTAAAGTTGTTAACTGATAAAATATTTATCATAATATTAGCAAACATTTATCAGTTGATTACTTTTTGATATCTTTTACAGTAACCAAGATAATTAAACTCAAAGTTAAAGTTAGTTTGATTAGTTTAGAGCCATTTTTGGCCCGTTCTTGATCCGTTCCTCATCATTTTTGAGTTTTTCTTATCACTCTTATTTGTCTATCAATTATATATACATATATAATTTTTTGTGATTTTGAAACTCTAAAACCCCAAAAAAAGGAGCTCATAAAACTAAGTGGTTTGGGGGAAGTGTGTGTGACAAGACACACAAAAAGAGATAAAAGAACACTGAAAAATGGTCCCAGGGGACCAGAAATCTTTTTTTTTTTGAGGCTCGAGAGCTTGAAAAGGGTCACAACACATACWACTATATGATTTGGGTTAAAGGACTGGAATAAAAAAAAACTTTTGAAAAAATTTTTTTTTGAAAATTTTCAAAATCTCATAACTGGACTTAAAATGACTCTAATCAACTGGAATTTTCAGATTTTTCATATTTTTCAAATTTCTAACAATTTAAAAACAATCTAGAACAGTTTTCTAGCTGAACAACTGGATTTTATAATTTTCAAAAGATGAAAAACTAAAATTCCCTTTAAATCCCTTAAAATCCCTTTAACTTGGCTTAAAATCACTTATTTTTCCCCAATTTTATGTCAACCGTAACCCAATTTTTTCGCAGGATCAACGAAACAACCTGGCTACCGTATCCGCGTATTTCGACGTTCACTGGCAGGACGATTTCATAAAATGGAAGCCAGAGATTTTCGGAGGAATCGAGAGAATATTTGTGCCAATTAAATGGATATGGAAGCCCGAATTCTACATGTATCACTCGGTATACGGTAGAGTTCCTGACTACGCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAGCTCATAAAACTAAGTGGT</pcr_primer_p1>
		<pcr_primer_p2>GAGTCATTTTAAGTCCAGTTATGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGGAGCTCATAAAACTAAGTGGTTTGGGGGAAGTGTGTGTGACAAGACACACAAAAAGAGATAAAAGAACACTGAAAAATGGTCCCAGGGGACCAGAAATCTTTTTTTTTTTGAGGCTCGAGAGCTTGAAAAGGGTCACAACACATACAACTATATGATTTGGGTTAAAGGACTGGAATAAAAAAAAACTTTTGAAAAAATTTTTTTTTGAAAATTTTCAAAATCTCATAACTGGACTTAAAATGACTC</canonical_amplicon>
		<polymorphic_amplicon>AGGAGCTCATAAAACTAAGTGGTTTGGGGGAAGTGTGTGTGACAAGACACACAAAAAGAGATAAAAGAACACTGAAAAATGGTCCCAGGGGACCAGAAATCTTTTTTTTTTTGAGGCTCGAGAGCTTGAAAAGGGTCACAACACATACWACTATATGATTTGGGTTAAAGGACTGGAATAAAAAAAAACTTTTGAAAAAATTTTTTTTTGAAAATTTTCAAAATCTCATAACTGGACTTAAAATGACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24567</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>118941</contig_pos>
        <strand>+</strand>
        <context>TAACAATTTA[A/G]AAACAATCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAACTGGAATTTTCAGATTTTTCATATTTTTCAAATTTCTAACAATTTA</left_flank>
        <right_flank>AAACAATCTAGAACAGTTTTCTAGCTGAACAACTGGATTTTATAATTTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTTGATATCTTTTACAGTAACCAAGATAATTAAACTCAAAGTTAAAGTTAGTTTGATTAGTTTAGAGCCATTTTTGGCCCGTTCTTGATCCGTTCCTCATCATTTTTGAGTTTTTCTTATCACTCTTATTTGTCTATCAATTATATATACATATATAATTTTTTGTGATTTTGAAACTCTAAAACCCCAAAAAAAGGAGCTCATAAAACTAAGTGGTTTGGGGGAAGTGTGTGTGACAAGACACACAAAAAGAGATAAAAGAACACTGAAAAATGGTCCCAGGGGACCAGAAATCTTTTTTTTTTTGAGGCTCGAGAGCTTGAAAAGGGTCACAACACATACAACTATATGATTTGGGTTAAAGGACTGGAATAAAAAAAAACTTTTGAAAAAATTTTTTTTTGAAAATTTTCAAAATCTCATAACTGGACTTAAAATGACTCTAATCAACTGGAATTTTCAGATTTTTCATATTTTTCAAATTTCTAACAATTTAAAAACAATCTAGAACAGTTTTCTAGCTGAACAACTGGATTTTATAATTTTCAAAAGATGAAAAACTAAAATTCCCTTTAAATCCCTTAAAATCCCTTTAACTTGGCTTAAAATCACTTATTTTTCCCCAATTTTATGTCAACCGTAACCCAATTTTTTCGCAGGATCAACGAAACAACCTGGCTACCGTATCCGCGTATTTCGACGTTCACTGGCAGGACGATTTCATAAAATGGAAGCCAGAGATTTTCGGAGGAATCGAGAGAATATTTGTGCCAATTAAATGGATATGGAAGCCCGAATTCTACATGTATCACTCGGTATACGGTAGAGTTCCTGACTACGCCCCAGACGCCTCCGCTGAGATTCATTATAATGGTAAATTTGAATTCACAAATTCTGAAATTCTAAAATTCTGAAAATTTGTAGGTCGAGTCCGAATGTTCGTATCGATTGCATCAAAAAGTTTCTGCCCGATCAACTTCAAACGATTCCCATTCGA</canonical>
            <polymorphic>CTTTTTGATATCTTTTACAGTAACCAAGATAATTAAACTCAAAGTTAAAGTTAGTTTGATTAGTTTAGAGCCATTTTTGGCCCGTTCTTGATCCGTTCCTCATCATTTTTGAGTTTTTCTTATCACTCTTATTTGTCTATCAATTATATATACATATATAATTTTTTGTGATTTTGAAACTCTAAAACCCCAAAAAAAGGAGCTCATAAAACTAAGTGGTTTGGGGGAAGTGTGTGTGACAAGACACACAAAAAGAGATAAAAGAACACTGAAAAATGGTCCCAGGGGACCAGAAATCTTTTTTTTTTTGAGGCTCGAGAGCTTGAAAAGGGTCACAACACATACAACTATATGATTTGGGTTAAAGGACTGGAATAAAAAAAAACTTTTGAAAAAATTTTTTTTTGAAAATTTTCAAAATCTCATAACTGGACTTAAAATGACTCTAATCAACTGGAATTTTCAGATTTTTCATATTTTTCAAATTTCTAACAATTTARAAACAATCTAGAACAGTTTTCTAGCTGAACAACTGGATTTTATAATTTTCAAAAGATGAAAAACTAAAATTCCCTTTAAATCCCTTAAAATCCCTTTAACTTGGCTTAAAATCACTTATTTTTCCCCAATTTTATGTCAACCGTAACCCAATTTTTTCGCAGGATCAACGAAACAACCTGGCTACCGTATCCGCGTATTTCGACGTTCACTGGCAGGACGATTTCATAAAATGGAAGCCAGAGATTTTCGGAGGAATCGAGAGAATATTTGTGCCAATTAAATGGATATGGAAGCCCGAATTCTACATGTATCACTCGGTATACGGTAGAGTTCCTGACTACGCCCCAGACGCCTCCGCTGAGATTCATTATAATGGTAAATTTGAATTCACAAATTCTGAAATTCTAAAATTCTGAAAATTTGTAGGTCGAGTCCGAATGTTCGTATCGATTGCATCAAAAAGTTTCTGCCCGATCAACTTCAAACGATTCCCATTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>498 423 79</canonical_bands>
                <polymorphic_bands>577 423</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>317 222 172 79 73 62 33 12 11 10 9</canonical_bands>
                <polymorphic_bands>317 222 172 141 73 33 12 11 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGATTTGGGTTAAAGGACTG</pcr_primer_p1>
		<pcr_primer_p2>TTAAAGGGATTTTAAGGGATTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATGATTTGGGTTAAAGGACTGGAATAAAAAAAAACTTTTGAAAAAATTTTTTTTTGAAAATTTTCAAAATCTCATAACTGGACTTAAAATGACTCTAATCAACTGGAATTTTCAGATTTTTCATATTTTTCAAATTTCTAACAATTTAAAAACAATCTAGAACAGTTTTCTAGCTGAACAACTGGATTTTATAATTTTCAAAAGATGAAAAACTAAAATTCCCTTTAAATCCCTTAAAATCCCTTTAA</canonical_amplicon>
		<polymorphic_amplicon>TATGATTTGGGTTAAAGGACTGGAATAAAAAAAAACTTTTGAAAAAATTTTTTTTTGAAAATTTTCAAAATCTCATAACTGGACTTAAAATGACTCTAATCAACTGGAATTTTCAGATTTTTCATATTTTTCAAATTTCTAACAATTTARAAACAATCTAGAACAGTTTTCTAGCTGAACAACTGGATTTTATAATTTTCAAAAGATGAAAAACTAAAATTCCCTTTAAATCCCTTAAAATCCCTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24568</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>128829</contig_pos>
        <strand></strand>
        <context>ttttatcagt[T/G]wacyactttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGT</left_flank>
        <right_flank>TACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAAAAACTGCTGAATTTCAAATTTTGAAGTCAAAAAATTTTCAAAACCCTTCTAACTTTCTTCATTCCCAACATTTTTCAACGAATTTTAGCTCAAAATGTAGCTGATTTCAAGAATCTTCCAAAAATCTGAATTTCCAGGTATCATGACTCTTCTCTCAATGTCTGTGATGCTCCTAATGCTTGTGGGAGAGATGAAGTTCGCCATGGAATCCGTCCCAGGACAACGTGGCAGTTTTTCGGATGTTCCCTTAATGGGAATCTATTATATGACACTAATTTGTATAGTGAGCATTGCCACGTGTACATCATCGATTTTCGTTCATCTGGAGAAGTTTGCACTGAGGAATCCTAGTTGGCAGGCGAGCATTTTCTCTAAATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTTTTTAAATTTTCAGAGTGTCCCATGGTACATCCGCTGGCTGGCCGCGAAAAAACTCTTCTGTTGTTACGTTCCAAAATCTTTCCGATACGATAAAGACGCCTATAGTAGGAATAACAATGTACAGGCGATTTCGCTACACTCACACCCGATAGAAATGTTGGCAAGAATTTGATTCCCAAAGAGGTAAGTTTTTAAAAAATTAAATAAATTTTCAAAAAAATATTTTTTTAGATCAATTTCACTGAAGTCAACCAGGATGCACCACTGCATGATGTGCTGGAGGGTCAGTTTTTTAATTCGTTGAAAATTTTATTTAAAATCTGAATTTAGCAGCTAAAGAGCTTTGAAATGA</canonical>
            <polymorphic>ATGAAAAACTGCTGAATTTCAAATTTTGAAGTCAAAAAATTTTCAAAACCCTTCTAACTTTCTTCATTCCCAACATTTTTCAACGAATTTTAGCTCAAAATGTAGCTGATTTCAAGAATCTTCCAAAAATCTGAATTTCCAGGTATCATGACTCTTCTCTCAATGTCTGTGATGCTCCTAATGCTTGTGGGAGAGATGAAGTTCGCCATGGAATCCGTCCCAGGACAACGTGGCAGTTTTTCGGATGTTCCCTTAATGGGAATCTATTATATGACACTAATTTGTATAGTGAGCATTGCCACGTGTACATCATCGATTTTCGTTCATCTGGAGAAGTTTGCACTGAGGAATCCTAGTTGGCAGGCGAGCATTTTCTCTAAATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTKTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTTTTTAAATTTTCAGAGTGTCCCATGGTACATCCGCTGGCTGGCCGCGAAAAAACTCTTCTGTTGTTACGTTCCAAAATCTTTCCGATACGATAAAGACGCCTATAGTAGGAATAACAATGTACAGGCGATTTCGCTACACTCACACCCGATAGAAATGTTGGCAAGAATTTGATTCCCAAAGAGGTAAGTTTTTAAAAAATTAAATAAATTTTCAAAAAAATATTTTTTTAGATCAATTTCACTGAAGTCAACCAGGATGCACCACTGCATGATGTGCTGGAGGGTCAGTTTTTTAATTCGTTGAAAATTTTATTTAAAATCTGAATTTAGCAGCTAAAGAGCTTTGAAATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGTCTCAAAAATAAAAGTGG</pcr_primer_p1>
		<pcr_primer_p2>AAATTCTGAATGTCCCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>ATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTKTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24569</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>128830</contig_pos>
        <strand></strand>
        <context>tttatcagtk[T/A]acyacttttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTT</left_flank>
        <right_flank>ACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAAACTGCTGAATTTCAAATTTTGAAGTCAAAAAATTTTCAAAACCCTTCTAACTTTCTTCATTCCCAACATTTTTCAACGAATTTTAGCTCAAAATGTAGCTGATTTCAAGAATCTTCCAAAAATCTGAATTTCCAGGTATCATGACTCTTCTCTCAATGTCTGTGATGCTCCTAATGCTTGTGGGAGAGATGAAGTTCGCCATGGAATCCGTCCCAGGACAACGTGGCAGTTTTTCGGATGTTCCCTTAATGGGAATCTATTATATGACACTAATTTGTATAGTGAGCATTGCCACGTGTACATCATCGATTTTCGTTCATCTGGAGAAGTTTGCACTGAGGAATCCTAGTTGGCAGGCGAGCATTTTCTCTAAATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTTTTTAAATTTTCAGAGTGTCCCATGGTACATCCGCTGGCTGGCCGCGAAAAAACTCTTCTGTTGTTACGTTCCAAAATCTTTCCGATACGATAAAGACGCCTATAGTAGGAATAACAATGTACAGGCGATTTCGCTACACTCACACCCGATAGAAATGTTGGCAAGAATTTGATTCCCAAAGAGGTAAGTTTTTAAAAAATTAAATAAATTTTCAAAAAAATATTTTTTTAGATCAATTTCACTGAAGTCAACCAGGATGCACCACTGCATGATGTGCTGGAGGGTCAGTTTTTTAATTCGTTGAAAATTTTATTTAAAATCTGAATTTAGCAGCTAAAGAGCTTTGAAATGAG</canonical>
            <polymorphic>TGAAAAACTGCTGAATTTCAAATTTTGAAGTCAAAAAATTTTCAAAACCCTTCTAACTTTCTTCATTCCCAACATTTTTCAACGAATTTTAGCTCAAAATGTAGCTGATTTCAAGAATCTTCCAAAAATCTGAATTTCCAGGTATCATGACTCTTCTCTCAATGTCTGTGATGCTCCTAATGCTTGTGGGAGAGATGAAGTTCGCCATGGAATCCGTCCCAGGACAACGTGGCAGTTTTTCGGATGTTCCCTTAATGGGAATCTATTATATGACACTAATTTGTATAGTGAGCATTGCCACGTGTACATCATCGATTTTCGTTCATCTGGAGAAGTTTGCACTGAGGAATCCTAGTTGGCAGGCGAGCATTTTCTCTAAATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTWACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTTTTTAAATTTTCAGAGTGTCCCATGGTACATCCGCTGGCTGGCCGCGAAAAAACTCTTCTGTTGTTACGTTCCAAAATCTTTCCGATACGATAAAGACGCCTATAGTAGGAATAACAATGTACAGGCGATTTCGCTACACTCACACCCGATAGAAATGTTGGCAAGAATTTGATTCCCAAAGAGGTAAGTTTTTAAAAAATTAAATAAATTTTCAAAAAAATATTTTTTTAGATCAATTTCACTGAAGTCAACCAGGATGCACCACTGCATGATGTGCTGGAGGGTCAGTTTTTTAATTCGTTGAAAATTTTATTTAAAATCTGAATTTAGCAGCTAAAGAGCTTTGAAATGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGTCTCAAAAATAAAAGTGG</pcr_primer_p1>
		<pcr_primer_p2>AAATTCTGAATGTCCCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>ATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTWACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24570</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>128833</contig_pos>
        <strand></strand>
        <context>atcagtkwac[C/T]actttttgat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTAC</left_flank>
        <right_flank>ACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACTGCTGAATTTCAAATTTTGAAGTCAAAAAATTTTCAAAACCCTTCTAACTTTCTTCATTCCCAACATTTTTCAACGAATTTTAGCTCAAAATGTAGCTGATTTCAAGAATCTTCCAAAAATCTGAATTTCCAGGTATCATGACTCTTCTCTCAATGTCTGTGATGCTCCTAATGCTTGTGGGAGAGATGAAGTTCGCCATGGAATCCGTCCCAGGACAACGTGGCAGTTTTTCGGATGTTCCCTTAATGGGAATCTATTATATGACACTAATTTGTATAGTGAGCATTGCCACGTGTACATCATCGATTTTCGTTCATCTGGAGAAGTTTGCACTGAGGAATCCTAGTTGGCAGGCGAGCATTTTCTCTAAATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTTTTTAAATTTTCAGAGTGTCCCATGGTACATCCGCTGGCTGGCCGCGAAAAAACTCTTCTGTTGTTACGTTCCAAAATCTTTCCGATACGATAAAGACGCCTATAGTAGGAATAACAATGTACAGGCGATTTCGCTACACTCACACCCGATAGAAATGTTGGCAAGAATTTGATTCCCAAAGAGGTAAGTTTTTAAAAAATTAAATAAATTTTCAAAAAAATATTTTTTTAGATCAATTTCACTGAAGTCAACCAGGATGCACCACTGCATGATGTGCTGGAGGGTCAGTTTTTTAATTCGTTGAAAATTTTATTTAAAATCTGAATTTAGCAGCTAAAGAGCTTTGAAATGAGTCT</canonical>
            <polymorphic>AAAACTGCTGAATTTCAAATTTTGAAGTCAAAAAATTTTCAAAACCCTTCTAACTTTCTTCATTCCCAACATTTTTCAACGAATTTTAGCTCAAAATGTAGCTGATTTCAAGAATCTTCCAAAAATCTGAATTTCCAGGTATCATGACTCTTCTCTCAATGTCTGTGATGCTCCTAATGCTTGTGGGAGAGATGAAGTTCGCCATGGAATCCGTCCCAGGACAACGTGGCAGTTTTTCGGATGTTCCCTTAATGGGAATCTATTATATGACACTAATTTGTATAGTGAGCATTGCCACGTGTACATCATCGATTTTCGTTCATCTGGAGAAGTTTGCACTGAGGAATCCTAGTTGGCAGGCGAGCATTTTCTCTAAATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACYACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTTTTTAAATTTTCAGAGTGTCCCATGGTACATCCGCTGGCTGGCCGCGAAAAAACTCTTCTGTTGTTACGTTCCAAAATCTTTCCGATACGATAAAGACGCCTATAGTAGGAATAACAATGTACAGGCGATTTCGCTACACTCACACCCGATAGAAATGTTGGCAAGAATTTGATTCCCAAAGAGGTAAGTTTTTAAAAAATTAAATAAATTTTCAAAAAAATATTTTTTTAGATCAATTTCACTGAAGTCAACCAGGATGCACCACTGCATGATGTGCTGGAGGGTCAGTTTTTTAATTCGTTGAAAATTTTATTTAAAATCTGAATTTAGCAGCTAAAGAGCTTTGAAATGAGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>167 121 97 84 80 59 53 44 43 38 38 37 35 20 18 16 15 12 10 4 4 3 2</canonical_bands>
                <polymorphic_bands>167 121 97 91 84 80 59 44 43 38 37 35 20 18 16 15 12 10 4 4 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCGTCTCAAAAATAAAAGTGG</pcr_primer_p1>
		<pcr_primer_p2>AAATTCTGAATGTCCCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>ATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACYACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24571</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>128875</contig_pos>
        <strand></strand>
        <context>aattagtgtc[G/A]aagagagggg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTC</left_flank>
        <right_flank>AAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCCTTCTAACTTTCTTCATTCCCAACATTTTTCAACGAATTTTAGCTCAAAATGTAGCTGATTTCAAGAATCTTCCAAAAATCTGAATTTCCAGGTATCATGACTCTTCTCTCAATGTCTGTGATGCTCCTAATGCTTGTGGGAGAGATGAAGTTCGCCATGGAATCCGTCCCAGGACAACGTGGCAGTTTTTCGGATGTTCCCTTAATGGGAATCTATTATATGACACTAATTTGTATAGTGAGCATTGCCACGTGTACATCATCGATTTTCGTTCATCTGGAGAAGTTTGCACTGAGGAATCCTAGTTGGCAGGCGAGCATTTTCTCTAAATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTTTTTAAATTTTCAGAGTGTCCCATGGTACATCCGCTGGCTGGCCGCGAAAAAACTCTTCTGTTGTTACGTTCCAAAATCTTTCCGATACGATAAAGACGCCTATAGTAGGAATAACAATGTACAGGCGATTTCGCTACACTCACACCCGATAGAAATGTTGGCAAGAATTTGATTCCCAAAGAGGTAAGTTTTTAAAAAATTAAATAAATTTTCAAAAAAATATTTTTTTAGATCAATTTCACTGAAGTCAACCAGGATGCACCACTGCATGATGTGCTGGAGGGTCAGTTTTTTAATTCGTTGAAAATTTTATTTAAAATCTGAATTTAGCAGCTAAAGAGCTTTGAAATGAGTCTAAACACGACTAGGCTCCGCCCATTTTCAGTTTTCGTGGCGAG</canonical>
            <polymorphic>AACCCTTCTAACTTTCTTCATTCCCAACATTTTTCAACGAATTTTAGCTCAAAATGTAGCTGATTTCAAGAATCTTCCAAAAATCTGAATTTCCAGGTATCATGACTCTTCTCTCAATGTCTGTGATGCTCCTAATGCTTGTGGGAGAGATGAAGTTCGCCATGGAATCCGTCCCAGGACAACGTGGCAGTTTTTCGGATGTTCCCTTAATGGGAATCTATTATATGACACTAATTTGTATAGTGAGCATTGCCACGTGTACATCATCGATTTTCGTTCATCTGGAGAAGTTTGCACTGAGGAATCCTAGTTGGCAGGCGAGCATTTTCTCTAAATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCRAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTTTTTAAATTTTCAGAGTGTCCCATGGTACATCCGCTGGCTGGCCGCGAAAAAACTCTTCTGTTGTTACGTTCCAAAATCTTTCCGATACGATAAAGACGCCTATAGTAGGAATAACAATGTACAGGCGATTTCGCTACACTCACACCCGATAGAAATGTTGGCAAGAATTTGATTCCCAAAGAGGTAAGTTTTTAAAAAATTAAATAAATTTTCAAAAAAATATTTTTTTAGATCAATTTCACTGAAGTCAACCAGGATGCACCACTGCATGATGTGCTGGAGGGTCAGTTTTTTAATTCGTTGAAAATTTTATTTAAAATCTGAATTTAGCAGCTAAAGAGCTTTGAAATGAGTCTAAACACGACTAGGCTCCGCCCATTTTCAGTTTTCGTGGCGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 268 231</canonical_bands>
                <polymorphic_bands>732 268</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCGTCTCAAAAATAAAAGTGG</pcr_primer_p1>
		<pcr_primer_p2>AAATTCTGAATGTCCCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>ATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCRAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24572</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>128890</contig_pos>
        <strand></strand>
        <context>gagggggtac[T/C]tGGGTCCMTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTAC</left_flank>
        <right_flank>TGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCATTCCCAACATTTTTCAACGAATTTTAGCTCAAAATGTAGCTGATTTCAAGAATCTTCCAAAAATCTGAATTTCCAGGTATCATGACTCTTCTCTCAATGTCTGTGATGCTCCTAATGCTTGTGGGAGAGATGAAGTTCGCCATGGAATCCGTCCCAGGACAACGTGGCAGTTTTTCGGATGTTCCCTTAATGGGAATCTATTATATGACACTAATTTGTATAGTGAGCATTGCCACGTGTACATCATCGATTTTCGTTCATCTGGAGAAGTTTGCACTGAGGAATCCTAGTTGGCAGGCGAGCATTTTCTCTAAATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTTTTTAAATTTTCAGAGTGTCCCATGGTACATCCGCTGGCTGGCCGCGAAAAAACTCTTCTGTTGTTACGTTCCAAAATCTTTCCGATACGATAAAGACGCCTATAGTAGGAATAACAATGTACAGGCGATTTCGCTACACTCACACCCGATAGAAATGTTGGCAAGAATTTGATTCCCAAAGAGGTAAGTTTTTAAAAAATTAAATAAATTTTCAAAAAAATATTTTTTTAGATCAATTTCACTGAAGTCAACCAGGATGCACCACTGCATGATGTGCTGGAGGGTCAGTTTTTTAATTCGTTGAAAATTTTATTTAAAATCTGAATTTAGCAGCTAAAGAGCTTTGAAATGAGTCTAAACACGACTAGGCTCCGCCCATTTTCAGTTTTCGTGGCGAGACCCGAATTTTCAAA</canonical>
            <polymorphic>CTTCATTCCCAACATTTTTCAACGAATTTTAGCTCAAAATGTAGCTGATTTCAAGAATCTTCCAAAAATCTGAATTTCCAGGTATCATGACTCTTCTCTCAATGTCTGTGATGCTCCTAATGCTTGTGGGAGAGATGAAGTTCGCCATGGAATCCGTCCCAGGACAACGTGGCAGTTTTTCGGATGTTCCCTTAATGGGAATCTATTATATGACACTAATTTGTATAGTGAGCATTGCCACGTGTACATCATCGATTTTCGTTCATCTGGAGAAGTTTGCACTGAGGAATCCTAGTTGGCAGGCGAGCATTTTCTCTAAATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACYTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTTTTTAAATTTTCAGAGTGTCCCATGGTACATCCGCTGGCTGGCCGCGAAAAAACTCTTCTGTTGTTACGTTCCAAAATCTTTCCGATACGATAAAGACGCCTATAGTAGGAATAACAATGTACAGGCGATTTCGCTACACTCACACCCGATAGAAATGTTGGCAAGAATTTGATTCCCAAAGAGGTAAGTTTTTAAAAAATTAAATAAATTTTCAAAAAAATATTTTTTTAGATCAATTTCACTGAAGTCAACCAGGATGCACCACTGCATGATGTGCTGGAGGGTCAGTTTTTTAATTCGTTGAAAATTTTATTTAAAATCTGAATTTAGCAGCTAAAGAGCTTTGAAATGAGTCTAAACACGACTAGGCTCCGCCCATTTTCAGTTTTCGTGGCGAGACCCGAATTTTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGTCTCAAAAATAAAAGTGG</pcr_primer_p1>
		<pcr_primer_p2>AAATTCTGAATGTCCCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>ATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACTTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATCGTCTCAAAAATAAAAGTGGCTACCTTTGAGTCAACGTATCTCGGCTTTCATCACAGATATCAAAAAGTGATCAACTGATAAAATGTTTGCCATAATATCAGCTACATTTTATCAGTTTACCACTTTTTGATATCTCTTATAAGAGCCGAGATAATTAGTGTCGAAGAGAGGGGGTACYTGGGTCCATGGATCCCAGTGAAATTTTTTTTTCAGGAAACATTTTTTTGCTCATTCTATCTAAAAATTTTTGGGACATTCAGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24575</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>139682</contig_pos>
        <strand>+</strand>
        <context>AAAGCCCCCC[C/T]TAAACCATAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAGAGTCAGAACGATCAGAAACTTGGAAATAAATGAAAAAAGCCCCCC</left_flank>
        <right_flank>TAAACCATAATTTTTTGCTAAAAATCGATTTCAGATCTCGCTCCAGAGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCCAGATTTTTCGCTAAAATTCGTCTGAAACATGACCGACGCAGCAATGGACATCGACGCGATGCTCGACGGAGCCATGGAAGACGCCAAAAACGTAAGTTATCGACGACAAATTAAAAAATTGAGAAAAATCAATTTTTTTGCAGGAAAAGAGCCGAGGCAGCCAGCGATCACCGGCGCGAAGCAATCGATCGAGGTAAGCTGGGAGGATTATCTAGAATATTCGATTAGATTTTTTTTAAATAATTGAAAAAAGTTCAAAACTAAGACTTGTGTCGATTTAGACCGCAAGCGGAGCAGTACCAGCACCAATATATAGGCAGATAAACATACGGGTTCGTTCCGATCGGTTCGAGAATTTTTGATTCCAGGCAGAGACACTTCTTACTCTACGGCAGACATTACCCCCTCTTTCCCCTCTTTCTAGCCCTTTTCAGACCCGAAAAATGAAGAGTCAGAACGATCAGAAACTTGGAAATAAATGAAAAAAGCCCCCCTTAAACCATAATTTTTTGCTAAAAATCGATTTCAGATCTCGCTCCAGAGACAGGAAGAGGAGCCGCAGTCGAAGCAAGGATCGCCGGCGCAGCCGATCCAGGGATCGTGGAGATCGACGTCGTTCGAGAAGTAGGAGCCGTGACAGGAGACGGAGACGTTCAGGAAGCCGGGATCGTCGGAGGAGCCGCAGCCGTGATCGAGGAGGATATCGGCGACGATCAAGGCAAGGAAAATAATCCAAAAGGCGATGGAAGATGAGGAGAAAATGCTATGGGAAAAAAAGGGAAATTATGAGAGAGAAATGATAGAGAATGAGAGAATGGGAACATTTTTCAGGATTTTTCAGGCAAATTCTTCTAGTTTTCGGCACTTTGAAAGGACACAGAAGGATTGAGAACCCTGAATTTTGACCATGAAATTTCTTTTTTTTTAAATCTCAGTTACCGTAAAACCTATGATAGAAGAACCCCCTTACTTCTTGTCAACTGATAACTTGTTTA</canonical>
            <polymorphic>TTTCCAGATTTTTCGCTAAAATTCGTCTGAAACATGACCGACGCAGCAATGGACATCGACGCGATGCTCGACGGAGCCATGGAAGACGCCAAAAACGTAAGTTATCGACGACAAATTAAAAAATTGAGAAAAATCAATTTTTTTGCAGGAAAAGAGCCGAGGCAGCCAGCGATCACCGGCGCGAAGCAATCGATCGAGGTAAGCTGGGAGGATTATCTAGAATATTCGATTAGATTTTTTTTAAATAATTGAAAAAAGTTCAAAACTAAGACTTGTGTCGATTTAGACCGCAAGCGGAGCAGTACCAGCACCAATATATAGGCAGATAAACATACGGGTTCGTTCCGATCGGTTCGAGAATTTTTGATTCCAGGCAGAGACACTTCTTACTCTACGGCAGACATTACCCCCTCTTTCCCCTCTTTCTAGCCCTTTTCAGACCCGAAAAATGAAGAGTCAGAACGATCAGAAACTTGGAAATAAATGAAAAAAGCCCCCCYTAAACCATAATTTTTTGCTAAAAATCGATTTCAGATCTCGCTCCAGAGACAGGAAGAGGAGCCGCAGTCGAAGCAAGGATCGCCGGCGCAGCCGATCCAGGGATCGTGGAGATCGACGTCGTTCGAGAAGTAGGAGCCGTGACAGGAGACGGAGACGTTCAGGAAGCCGGGATCGTCGGAGGAGCCGCAGCCGTGATCGAGGAGGATATCGGCGACGATCAAGGCAAGGAAAATAATCCAAAAGGCGATGGAAGATGAGGAGAAAATGCTATGGGAAAAAAAGGGAAATTATGAGAGAGAAATGATAGAGAATGAGAGAATGGGAACATTTTTCAGGATTTTTCAGGCAAATTCTTCTAGTTTTCGGCACTTTGAAAGGACACAGAAGGATTGAGAACCCTGAATTTTGACCATGAAATTTCTTTTTTTTTAAATCTCAGTTACCGTAAAACCTATGATAGAAGAACCCCCTTACTTCTTGTCAACTGATAACTTGTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>430 259 125 116 70</canonical_bands>
                <polymorphic_bands>689 125 116 70</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGAAGAGTCAGAACGAT</pcr_primer_p1>
		<pcr_primer_p2>GATTATTTTCCTTGCCTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>294</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGAAGAGTCAGAACGATCAGAAACTTGGAAATAAATGAAAAAAGCCCCCCTTAAACCATAATTTTTTGCTAAAAATCGATTTCAGATCTCGCTCCAGAGACAGGAAGAGGAGCCGCAGTCGAAGCAAGGATCGCCGGCGCAGCCGATCCAGGGATCGTGGAGATCGACGTCGTTCGAGAAGTAGGAGCCGTGACAGGAGACGGAGACGTTCAGGAAGCCGGGATCGTCGGAGGAGCCGCAGCCGTGATCGAGGAGGATATCGGCGACGATCAAGGCAAGGAAAATAATC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGAAGAGTCAGAACGATCAGAAACTTGGAAATAAATGAAAAAAGCCCCCCYTAAACCATAATTTTTTGCTAAAAATCGATTTCAGATCTCGCTCCAGAGACAGGAAGAGGAGCCGCAGTCGAAGCAAGGATCGCCGGCGCAGCCGATCCAGGGATCGTGGAGATCGACGTCGTTCGAGAAGTAGGAGCCGTGACAGGAGACGGAGACGTTCAGGAAGCCGGGATCGTCGGAGGAGCCGCAGCCGTGATCGAGGAGGATATCGGCGACGATCAAGGCAAGGAAAATAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24576</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>188307</contig_pos>
        <strand></strand>
        <context>tttttcgaaa[A/T]ttattttttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAACGTTTAGAAAATCTGAAAATCCAAAAAAAAAAATTTTTTTTCGAAA</left_flank>
        <right_flank>TTATTTTTTTTCAAAATTTTCAGCCAAAAAATGTTTTTTTTCCAGGCCAC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCATTCTCATATACTTCTTCCTCCTACGCTAGCTCAAAAGTTCAAATTTTTGAATTCTCAAAAAAAATGTTTTTTTCAAAAATTAATTTTCCCTCTAATTATCTTAATTAGGCTCTTAACTTTCAATTTTTTGGATTTTTTTTTCAATTTTTTTCCATAAAAGTACATCTGTCTCCAGATGTTTCTTGTTTCGGAGAAGTTCCTAGAATTTATAAAAATTGCAAACTCTAGCATTTATAATTATAGAAATTGAGGAAGAAGAAGCTCACACGATGTGTGAGCTCTTATTATAGACAGGAGCCTGACTTTTAAAAATGTCAGAATTTTTAAATTATAGTTCCTGGAAAATTTTTTGAAATTAAAAAAAAATTAAAATTTTTTTTTTTAAATTTCAATAATACATTTTCAGAGTAAAACTAAGGTCTAAAATTATTAGAAAACAGTTTTAGAACGTTTAGAAAATCTGAAAATCCAAAAAAAAAAATTTTTTTTCGAAAATTATTTTTTTTCAAAATTTTCAGCCAAAAAATGTTTTTTTTCCAGGCCACAATTTCCTCACCTGAAACCAAAATCTTGCCACCATCATCTGAAACTACAGTAACCCGAAACACTTCTCGCGTTGAACACGTCGTTGTGGAAATCGGAGGCGCCACCACGTCATCTGAAAGCTGAAAATCTGAAAATCTGAAATTTGTTGCCTCTCATACTCATATCATTTTCCCCCGGGTCCATTTAAACCAATTTTTATCATTAAAATTTTTGAAAAAAAAAACAAAACAGGTATTTTTTAATTTTTTGTAATTTTTCAATTTTTTAAAGACAATCTAGCTAAATTAGCTGAAATTTTGAGTATTTTTTGTGTTGTTATAGCTTTAATTTTCTCTAATAAATGAAATTTTTCTATTTGCTCTTAAAATTCCAAATAAAATTCGAAAAACTTTTTTTTTTCGAACAGGTGAAATTATTTAATTTTTTGTCCCAAATTCTATAGAATTAGC</canonical>
            <polymorphic>ATTCATTCTCATATACTTCTTCCTCCTACGCTAGCTCAAAAGTTCAAATTTTTGAATTCTCAAAAAAAATGTTTTTTTCAAAAATTAATTTTCCCTCTAATTATCTTAATTAGGCTCTTAACTTTCAATTTTTTGGATTTTTTTTTCAATTTTTTTCCATAAAAGTACATCTGTCTCCAGATGTTTCTTGTTTCGGAGAAGTTCCTAGAATTTATAAAAATTGCAAACTCTAGCATTTATAATTATAGAAATTGAGGAAGAAGAAGCTCACACGATGTGTGAGCTCTTATTATAGACAGGAGCCTGACTTTTAAAAATGTCAGAATTTTTAAATTATAGTTCCTGGAAAATTTTTTGAAATTAAAAAAAAATTAAAATTTTTTTTTTTAAATTTCAATAATACATTTTCAGAGTAAAACTAAGGTCTAAAATTATTAGAAAACAGTTTTAGAACGTTTAGAAAATCTGAAAATCCAAAAAAAAAAATTTTTTTTCGAAAWTTATTTTTTTTCAAAATTTTCAGCCAAAAAATGTTTTTTTTCCAGGCCACAATTTCCTCACCTGAAACCAAAATCTTGCCACCATCATCTGAAACTACAGTAACCCGAAACACTTCTCGCGTTGAACACGTCGTTGTGGAAATCGGAGGCGCCACCACGTCATCTGAAAGCTGAAAATCTGAAAATCTGAAATTTGTTGCCTCTCATACTCATATCATTTTCCCCCGGGTCCATTTAAACCAATTTTTATCATTAAAATTTTTGAAAAAAAAAACAAAACAGGTATTTTTTAATTTTTTGTAATTTTTCAATTTTTTAAAGACAATCTAGCTAAATTAGCTGAAATTTTGAGTATTTTTTGTGTTGTTATAGCTTTAATTTTCTCTAATAAATGAAATTTTTCTATTTGCTCTTAAAATTCCAAATAAAATTCGAAAAACTTTTTTTTTTCGAACAGGTGAAATTATTTAATTTTTTGTCCCAAATTCTATAGAATTAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>140 74 61 55 51 46 40 36 35 33 33 28 24 22 21 21 19 19 17 16 15 14 14 14 12 12 11 10 10 10 10 10 9 9 8 8 8 8 7 6 4</canonical_bands>
                <polymorphic_bands>140 74 61 55 51 46 40 36 35 33 33 30 28 24 22 21 21 19 19 17 15 14 14 12 12 11 10 10 10 10 10 9 9 8 8 8 8 7 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTCAGAATTTTTAAATTATAGTTCC</pcr_primer_p1>
		<pcr_primer_p2>TTTCAGGTGAGGAAATTGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTCAGAATTTTTAAATTATAGTTCCTGGAAAATTTTTTGAAATTAAAAAAAAATTAAAATTTTTTTTTTTAAATTTCAATAATACATTTTCAGAGTAAAACTAAGGTCTAAAATTATTAGAAAACAGTTTTAGAACGTTTAGAAAATCTGAAAATCCAAAAAAAAAAATTTTTTTTCGAAAATTATTTTTTTTCAAAATTTTCAGCCAAAAAATGTTTTTTTTCCAGGCCACAATTTCCTCACCTGAAA</canonical_amplicon>
		<polymorphic_amplicon>TGTCAGAATTTTTAAATTATAGTTCCTGGAAAATTTTTTGAAATTAAAAAAAAATTAAAATTTTTTTTTTTAAATTTCAATAATACATTTTCAGAGTAAAACTAAGGTCTAAAATTATTAGAAAACAGTTTTAGAACGTTTAGAAAATCTGAAAATCCAAAAAAAAAAATTTTTTTTCGAAAWTTATTTTTTTTCAAAATTTTCAGCCAAAAAATGTTTTTTTTCCAGGCCACAATTTCCTCACCTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24577</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>189373</contig_pos>
        <strand></strand>
        <context>cgytttgtag[T/G]gctcttcaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AACTTTGGTCATAAACAAGATACAGTAAGACAACTAGTATCGCTTTGTAG</left_flank>
        <right_flank>GCTCTTCAAATTCTATCATATTTATGTTAATTGATTCAAAAATATCCATT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATATATGAAGTTTTGAATCTGTACCTTGTCTATGAACAAAGTTATGACCCCTAAAGCTCTAACCGCGTAGCTTGGTTGGTTTTTGGTTTATAACTTTGTTTGTAGGCAAGATACAGTGACCCAAATAATATTATTTTGTAGTTTTCTTCTTGTTCTACCGTATCCAATTTAGTTAATTTAAAAATATAAATTTTGAAGAAAGTTATGGGCTTAATAGCTAGCTGAAGGTTTGAAGCATATTAAGGTAAATGCCTACTATTAGGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAATCCAATTAATATTCGTTTGTAGTTTTTTTTTTGTTCTATTGTATCCAATTTAGATGACTTAAAAATATAAATTATGAAAGAAGTTATGGGCCCTAGTTGAAGTTGGCTTAGGAAGGTTAAGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAAGACAACTAGTATCGCTTTGTAGTGCTCTTCAAATTCTATCATATTTATGTTAATTGATTCAAAAATATCCATTCTGAAACGAATTAAGACAGGGCCCGTTTTCATCATAAAGCCTGTAATAGAAGAGACCTCACACAATAAAGGTCGAGCTCAATTATCTTGGGCCCGAATGAAAGATATAAAAAAGCCTTGAAAATTTCCGTAAACTGGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGTAAAAAAGTAATCAACTGATAAAACTGATAAAACGTGAAAATGTCCCTGTGAGACCATTGAAACAAAAAAAAAGATCCCTGGGATCTTCAAAGACTACATCAACGTGGCAGCATTTTCTTGCTGGTGTAATTAATAGATTTATGTTATTACAATACGCTCCGGGAGGGTGGTCTAGGCGACCACACTACATACAAATCGGCTGTTTCGTTGATCAAGGATCCACAGGTGGATAGGGACTATAGTTTAGGGGGACATCGAGTACGGTAAGGA</canonical>
            <polymorphic>AATATATGAAGTTTTGAATCTGTACCTTGTCTATGAACAAAGTTATGACCCCTAAAGCTCTAACCGCGTAGCTTGGTTGGTTTTTGGTTTATAACTTTGTTTGTAGGCAAGATACAGTGACCCAAATAATATTATTTTGTAGTTTTCTTCTTGTTCTACCGTATCCAATTTAGTTAATTTAAAAATATAAATTTTGAAGAAAGTTATGGGCTTAATAGCTAGCTGAAGGTTTGAAGCATATTAAGGTAAATGCCTACTATTAGGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAATCCAATTAATATTCGTTTGTAGTTTTTTTTTTGTTCTATTGTATCCAATTTAGATGACTTAAAAATATAAATTATGAAAGAAGTTATGGGCCCTAGTTGAAGTTGGCTTAGGAAGGTTAAGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAAGACAACTAGTATCGCTTTGTAGKGCTCTTCAAATTCTATCATATTTATGTTAATTGATTCAAAAATATCCATTCTGAAACGAATTAAGACAGGGCCCGTTTTCATCATAAAGCCTGTAATAGAAGAGACCTCACACAATAAAGGTCGAGCTCAATTATCTTGGGCCCGAATGAAAGATATAAAAAAGCCTTGAAAATTTCCGTAAACTGGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGTAAAAAAGTAATCAACTGATAAAACTGATAAAACGTGAAAATGTCCCTGTGAGACCATTGAAACAAAAAAAAAGATCCCTGGGATCTTCAAAGACTACATCAACGTGGCAGCATTTTCTTGCTGGTGTAATTAATAGATTTATGTTATTACAATACGCTCCGGGAGGGTGGTCTAGGCGACCACACTACATACAAATCGGCTGTTTCGTTGATCAAGGATCCACAGGTGGATAGGGACTATAGTTTAGGGGGACATCGAGTACGGTAAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>503 372 125</canonical_bands>
                <polymorphic_bands>628 372</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>402 309 101 70 55 48 15</canonical_bands>
                <polymorphic_bands>402 309 171 55 48 15</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>382 154 119 109 56 43 42 38 20 14 13 6 2 2</canonical_bands>
                <polymorphic_bands>491 154 119 56 43 42 38 20 14 13 6 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTGGCTTAGGAAGGTTAAG</pcr_primer_p1>
		<pcr_primer_p2>CAGTTTACGGAAATTTTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>AAGTTGGCTTAGGAAGGTTAAGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAAGACAACTAGTATCGCTTTGTAGTGCTCTTCAAATTCTATCATATTTATGTTAATTGATTCAAAAATATCCATTCTGAAACGAATTAAGACAGGGCCCGTTTTCATCATAAAGCCTGTAATAGAAGAGACCTCACACAATAAAGGTCGAGCTCAATTATCTTGGGCCCGAATGAAAGATATAAAAAAGCCTTGAAAATTTCCGTAAACTG</canonical_amplicon>
		<polymorphic_amplicon>AAGTTGGCTTAGGAAGGTTAAGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAAGACAACTAGTATCGCTTTGTAGKGCTCTTCAAATTCTATCATATTTATGTTAATTGATTCAAAAATATCCATTCTGAAACGAATTAAGACAGGGCCCGTTTTCATCATAAAGCCTGTAATAGAAGAGACCTCACACAATAAAGGTCGAGCTCAATTATCTTGGGCCCGAATGAAAGATATAAAAAAGCCTTGAAAATTTCCGTAAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24578</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>189485</contig_pos>
        <strand></strand>
        <context>gagacctcac[A/G]caataaaggt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAGACAGGGCCCGTTTTCATCATAAAGCCTGTAATAGAAGAGACCTCAC</left_flank>
        <right_flank>CAATAAAGGTCGAGCTCAATTATCTTGGGCCCGAATGAAAGATATAAAAA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACAGTGACCCAAATAATATTATTTTGTAGTTTTCTTCTTGTTCTACCGTATCCAATTTAGTTAATTTAAAAATATAAATTTTGAAGAAAGTTATGGGCTTAATAGCTAGCTGAAGGTTTGAAGCATATTAAGGTAAATGCCTACTATTAGGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAATCCAATTAATATTCGTTTGTAGTTTTTTTTTTGTTCTATTGTATCCAATTTAGATGACTTAAAAATATAAATTATGAAAGAAGTTATGGGCCCTAGTTGAAGTTGGCTTAGGAAGGTTAAGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAAGACAACTAGTATCGCTTTGTAGTGCTCTTCAAATTCTATCATATTTATGTTAATTGATTCAAAAATATCCATTCTGAAACGAATTAAGACAGGGCCCGTTTTCATCATAAAGCCTGTAATAGAAGAGACCTCACACAATAAAGGTCGAGCTCAATTATCTTGGGCCCGAATGAAAGATATAAAAAAGCCTTGAAAATTTCCGTAAACTGGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGTAAAAAAGTAATCAACTGATAAAACTGATAAAACGTGAAAATGTCCCTGTGAGACCATTGAAACAAAAAAAAAGATCCCTGGGATCTTCAAAGACTACATCAACGTGGCAGCATTTTCTTGCTGGTGTAATTAATAGATTTATGTTATTACAATACGCTCCGGGAGGGTGGTCTAGGCGACCACACTACATACAAATCGGCTGTTTCGTTGATCAAGGATCCACAGGTGGATAGGGACTATAGTTTAGGGGGACATCGAGTACGGTAAGGATCATAACATGGGATATAAGGTTTTTATACCCTGTCAAAGATAATTTTGTCGTTTTAATGACTCTAGAGCTCAGCCTTAAACCAGTTTCCAGCTACACATCTAGTTCAAAAGA</canonical>
            <polymorphic>TACAGTGACCCAAATAATATTATTTTGTAGTTTTCTTCTTGTTCTACCGTATCCAATTTAGTTAATTTAAAAATATAAATTTTGAAGAAAGTTATGGGCTTAATAGCTAGCTGAAGGTTTGAAGCATATTAAGGTAAATGCCTACTATTAGGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAATCCAATTAATATTCGTTTGTAGTTTTTTTTTTGTTCTATTGTATCCAATTTAGATGACTTAAAAATATAAATTATGAAAGAAGTTATGGGCCCTAGTTGAAGTTGGCTTAGGAAGGTTAAGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAAGACAACTAGTATCGCTTTGTAGTGCTCTTCAAATTCTATCATATTTATGTTAATTGATTCAAAAATATCCATTCTGAAACGAATTAAGACAGGGCCCGTTTTCATCATAAAGCCTGTAATAGAAGAGACCTCACRCAATAAAGGTCGAGCTCAATTATCTTGGGCCCGAATGAAAGATATAAAAAAGCCTTGAAAATTTCCGTAAACTGGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGTAAAAAAGTAATCAACTGATAAAACTGATAAAACGTGAAAATGTCCCTGTGAGACCATTGAAACAAAAAAAAAGATCCCTGGGATCTTCAAAGACTACATCAACGTGGCAGCATTTTCTTGCTGGTGTAATTAATAGATTTATGTTATTACAATACGCTCCGGGAGGGTGGTCTAGGCGACCACACTACATACAAATCGGCTGTTTCGTTGATCAAGGATCCACAGGTGGATAGGGACTATAGTTTAGGGGGACATCGAGTACGGTAAGGATCATAACATGGGATATAAGGTTTTTATACCCTGTCAAAGATAATTTTGTCGTTTTAATGACTCTAGAGCTCAGCCTTAAACCAGTTTCCAGCTACACATCTAGTTCAAAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>382 154 138 109 56 43 38 20 16 14 13 7 6 2 2</canonical_bands>
                <polymorphic_bands>382 156 138 109 56 43 38 20 16 14 13 7 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTGGCTTAGGAAGGTTAAG</pcr_primer_p1>
		<pcr_primer_p2>CAGTTTACGGAAATTTTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>AAGTTGGCTTAGGAAGGTTAAGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAAGACAACTAGTATCGCTTTGTAGTGCTCTTCAAATTCTATCATATTTATGTTAATTGATTCAAAAATATCCATTCTGAAACGAATTAAGACAGGGCCCGTTTTCATCATAAAGCCTGTAATAGAAGAGACCTCACACAATAAAGGTCGAGCTCAATTATCTTGGGCCCGAATGAAAGATATAAAAAAGCCTTGAAAATTTCCGTAAACTG</canonical_amplicon>
		<polymorphic_amplicon>AAGTTGGCTTAGGAAGGTTAAGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAAGACAACTAGTATCGCTTTGTAGTGCTCTTCAAATTCTATCATATTTATGTTAATTGATTCAAAAATATCCATTCTGAAACGAATTAAGACAGGGCCCGTTTTCATCATAAAGCCTGTAATAGAAGAGACCTCACRCAATAAAGGTCGAGCTCAATTATCTTGGGCCCGAATGAAAGATATAAAAAAGCCTTGAAAATTTCCGTAAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24579</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>189496</contig_pos>
        <strand></strand>
        <context>caataaaggt[C/A]gagctcaatt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CCGTTTTCATCATAAAGCCTGTAATAGAAGAGACCTCACACAATAAAGGT</left_flank>
        <right_flank>GAGCTCAATTATCTTGGGCCCGAATGAAAGATATAAAAAAGCCTTGAAAA</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATAATATTATTTTGTAGTTTTCTTCTTGTTCTACCGTATCCAATTTAGTTAATTTAAAAATATAAATTTTGAAGAAAGTTATGGGCTTAATAGCTAGCTGAAGGTTTGAAGCATATTAAGGTAAATGCCTACTATTAGGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAATCCAATTAATATTCGTTTGTAGTTTTTTTTTTGTTCTATTGTATCCAATTTAGATGACTTAAAAATATAAATTATGAAAGAAGTTATGGGCCCTAGTTGAAGTTGGCTTAGGAAGGTTAAGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAAGACAACTAGTATCGCTTTGTAGTGCTCTTCAAATTCTATCATATTTATGTTAATTGATTCAAAAATATCCATTCTGAAACGAATTAAGACAGGGCCCGTTTTCATCATAAAGCCTGTAATAGAAGAGACCTCACACAATAAAGGTCGAGCTCAATTATCTTGGGCCCGAATGAAAGATATAAAAAAGCCTTGAAAATTTCCGTAAACTGGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGTAAAAAAGTAATCAACTGATAAAACTGATAAAACGTGAAAATGTCCCTGTGAGACCATTGAAACAAAAAAAAAGATCCCTGGGATCTTCAAAGACTACATCAACGTGGCAGCATTTTCTTGCTGGTGTAATTAATAGATTTATGTTATTACAATACGCTCCGGGAGGGTGGTCTAGGCGACCACACTACATACAAATCGGCTGTTTCGTTGATCAAGGATCCACAGGTGGATAGGGACTATAGTTTAGGGGGACATCGAGTACGGTAAGGATCATAACATGGGATATAAGGTTTTTATACCCTGTCAAAGATAATTTTGTCGTTTTAATGACTCTAGAGCTCAGCCTTAAACCAGTTTCCAGCTACACATCTAGTTCAAAAGAGCCTACCGGCC</canonical>
            <polymorphic>AAATAATATTATTTTGTAGTTTTCTTCTTGTTCTACCGTATCCAATTTAGTTAATTTAAAAATATAAATTTTGAAGAAAGTTATGGGCTTAATAGCTAGCTGAAGGTTTGAAGCATATTAAGGTAAATGCCTACTATTAGGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAATCCAATTAATATTCGTTTGTAGTTTTTTTTTTGTTCTATTGTATCCAATTTAGATGACTTAAAAATATAAATTATGAAAGAAGTTATGGGCCCTAGTTGAAGTTGGCTTAGGAAGGTTAAGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAAGACAACTAGTATCGCTTTGTAGTGCTCTTCAAATTCTATCATATTTATGTTAATTGATTCAAAAATATCCATTCTGAAACGAATTAAGACAGGGCCCGTTTTCATCATAAAGCCTGTAATAGAAGAGACCTCACACAATAAAGGTMGAGCTCAATTATCTTGGGCCCGAATGAAAGATATAAAAAAGCCTTGAAAATTTCCGTAAACTGGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGTAAAAAAGTAATCAACTGATAAAACTGATAAAACGTGAAAATGTCCCTGTGAGACCATTGAAACAAAAAAAAAGATCCCTGGGATCTTCAAAGACTACATCAACGTGGCAGCATTTTCTTGCTGGTGTAATTAATAGATTTATGTTATTACAATACGCTCCGGGAGGGTGGTCTAGGCGACCACACTACATACAAATCGGCTGTTTCGTTGATCAAGGATCCACAGGTGGATAGGGACTATAGTTTAGGGGGACATCGAGTACGGTAAGGATCATAACATGGGATATAAGGTTTTTATACCCTGTCAAAGATAATTTTGTCGTTTTAATGACTCTAGAGCTCAGCCTTAAACCAGTTTCCAGCTACACATCTAGTTCAAAAGAGCCTACCGGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 363 137</canonical_bands>
                <polymorphic_bands>863 137</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTGGCTTAGGAAGGTTAAG</pcr_primer_p1>
		<pcr_primer_p2>CAGTTTACGGAAATTTTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>AAGTTGGCTTAGGAAGGTTAAGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAAGACAACTAGTATCGCTTTGTAGTGCTCTTCAAATTCTATCATATTTATGTTAATTGATTCAAAAATATCCATTCTGAAACGAATTAAGACAGGGCCCGTTTTCATCATAAAGCCTGTAATAGAAGAGACCTCACACAATAAAGGTCGAGCTCAATTATCTTGGGCCCGAATGAAAGATATAAAAAAGCCTTGAAAATTTCCGTAAACTG</canonical_amplicon>
		<polymorphic_amplicon>AAGTTGGCTTAGGAAGGTTAAGCTTAGGCTTAAGCTCTATAACTTTGGTCATAAACAAGATACAGTAAGACAACTAGTATCGCTTTGTAGTGCTCTTCAAATTCTATCATATTTATGTTAATTGATTCAAAAATATCCATTCTGAAACGAATTAAGACAGGGCCCGTTTTCATCATAAAGCCTGTAATAGAAGAGACCTCACACAATAAAGGTMGAGCTCAATTATCTTGGGCCCGAATGAAAGATATAAAAAAGCCTTGAAAATTTCCGTAAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24580</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>192669</contig_pos>
        <strand>+</strand>
        <context>TTAAATTTCG[C/G]TTTTCGATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCAATCAATTTTAGTTAGCCAAGCCTTAGTTAGAGACTGCTTAAATTTCG</left_flank>
        <right_flank>TTTTCGATTCTAAAAAACGACGGAAATTGCTTGAAAAGTCTGGAAAGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGTTCTACTAATCCTTTTTTGCTCAGGGGGAGCAAGGAAAACAGATTCCCTCGAAACGTTAGGCGAGAGGGAATTAAGTTTTATATCATTTTGTAGAACTTTTCAAGCCCTACGTTTCTATATCAGATTCATATGAAAATATTGATTTTGAAGAAAGTTGTGGGTCGATCAGTGTCCGGTGTATGCATTCGTCACATAGGGATGGTCTCAAGCGGCAACTGTTTTAATCATTCGAATTTTATATCATTTTGTAGGACTTTGAAAATCCTACATTTCTAAATAAATTTCACACAAAAACATTAATTTTGAATAAAGTTACCATGGAATTTACCATCTGGGATCGCACAAATCACACTTTGGCTTGTAGCTCCTCTCAAAATTGTCAGTTTTCCTTGGTCTAAAGTTTATTTTGTAGATTTCAAGAAGAGCTACGCAGTTATATAAAAATCAATCAATTTTAGTTAGCCAAGCCTTAGTTAGAGACTGCTTAAATTTCGATTTTCGATTCTAAAAAACGACGGAAATTGCTTGAAAAGTCTGGAAAGAATTCACAAGAGAATCACATGATTTTCAGCCAAATTTCAGTGTTTTCTTATCAAAAAGTGATCGTTCTTTTTAGAATGTTTTAATATTCGAATTGATAAGAATTTATGGGAAAAATTGTATATATTTTGGGACAAATTTCAGAATGTGAGGTAACAATTCCACTGGAAAAATTCTTTAATTTAAGAACAAATGCATTCAGGGGTCCCAATTTTTTGAATTGAAAAATTATAATAATCCAGTAAAATGTTTTTTTTCTTCAAAATTTCAAAAAGTGATTTTTTAAAAACACTTTAAAGGTTTTTTCCCGTTGACATCACTCTGAAATTTTAGGCGTTCTTTAGGAAAAGTCTACGACATATACAAAAGGCTGAAATTTTCTGATTAAATAGAATTTCAAAAAAGTTCCTTTGACATTTTTTGTCAGAAAAATTCGAAAAATTCAAATTTTGAAA</canonical>
            <polymorphic>TGTGTTCTACTAATCCTTTTTTGCTCAGGGGGAGCAAGGAAAACAGATTCCCTCGAAACGTTAGGCGAGAGGGAATTAAGTTTTATATCATTTTGTAGAACTTTTCAAGCCCTACGTTTCTATATCAGATTCATATGAAAATATTGATTTTGAAGAAAGTTGTGGGTCGATCAGTGTCCGGTGTATGCATTCGTCACATAGGGATGGTCTCAAGCGGCAACTGTTTTAATCATTCGAATTTTATATCATTTTGTAGGACTTTGAAAATCCTACATTTCTAAATAAATTTCACACAAAAACATTAATTTTGAATAAAGTTACCATGGAATTTACCATCTGGGATCGCACAAATCACACTTTGGCTTGTAGCTCCTCTCAAAATTGTCAGTTTTCCTTGGTCTAAAGTTTATTTTGTAGATTTCAAGAAGAGCTACGCAGTTATATAAAAATCAATCAATTTTAGTTAGCCAAGCCTTAGTTAGAGACTGCTTAAATTTCGSTTTTCGATTCTAAAAAACGACGGAAATTGCTTGAAAAGTCTGGAAAGAATTCACAAGAGAATCACATGATTTTCAGCCAAATTTCAGTGTTTTCTTATCAAAAAGTGATCGTTCTTTTTAGAATGTTTTAATATTCGAATTGATAAGAATTTATGGGAAAAATTGTATATATTTTGGGACAAATTTCAGAATGTGAGGTAACAATTCCACTGGAAAAATTCTTTAATTTAAGAACAAATGCATTCAGGGGTCCCAATTTTTTGAATTGAAAAATTATAATAATCCAGTAAAATGTTTTTTTTCTTCAAAATTTCAAAAAGTGATTTTTTAAAAACACTTTAAAGGTTTTTTCCCGTTGACATCACTCTGAAATTTTAGGCGTTCTTTAGGAAAAGTCTACGACATATACAAAAGGCTGAAATTTTCTGATTAAATAGAATTTCAAAAAAGTTCCTTTGACATTTTTTGTCAGAAAAATTCGAAAAATTCAAATTTTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>344 263 131 114 67 54 20 7</canonical_bands>
                <polymorphic_bands>344 270 131 114 67 54 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCAGTTTTCCTTGGTCTAAAGT</pcr_primer_p1>
		<pcr_primer_p2>AAACATTCTAAAAAGAACGATCA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GTCAGTTTTCCTTGGTCTAAAGTTTATTTTGTAGATTTCAAGAAGAGCTACGCAGTTATATAAAAATCAATCAATTTTAGTTAGCCAAGCCTTAGTTAGAGACTGCTTAAATTTCGATTTTCGATTCTAAAAAACGACGGAAATTGCTTGAAAAGTCTGGAAAGAATTCACAAGAGAATCACATGATTTTCAGCCAAATTTCAGTGTTTTCTTATCAAAAAGTGATCGTTCTTTTTAGAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GTCAGTTTTCCTTGGTCTAAAGTTTATTTTGTAGATTTCAAGAAGAGCTACGCAGTTATATAAAAATCAATCAATTTTAGTTAGCCAAGCCTTAGTTAGAGACTGCTTAAATTTCGSTTTTCGATTCTAAAAAACGACGGAAATTGCTTGAAAAGTCTGGAAAGAATTCACAAGAGAATCACATGATTTTCAGCCAAATTTCAGTGTTTTCTTATCAAAAAGTGATCGTTCTTTTTAGAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24581</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>225474</contig_pos>
        <strand></strand>
        <context>aaattaattt[T/G]atatgataga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTT</left_flank>
        <right_flank>ATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCTTGTCTATGAACAAAGTTATAGCGCTTAAGCGTAAGCTTAACCTTTACTCTCAATCCTAAGCTTATGCGTTGACCTTCAGCTAGATATTGGACCCATAACTTTCTTCAAAATGTATATTTTTTAATAAAATAAATTGGATATGATAGAAAAACTCAAAAGCTATTAGATAATATTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTAAGAGTCAACCTAACATTAAGCGTTGACACTAAGCTTAAGCCTAGCCCTGTCTTAATTCCTTTCAAAATGAATATTTTTGAATCAATTAAAACAAATATGATAGAATTTAAAGAGCACTACAAAACGATACTAGTTGTCTTACGGTATCTTGTCTATGAACAAAGTTGTAGAGCTTAAGCCTAAGCTTAACCTTCCTAAGCCTACGCTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTTAATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCAAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCACCTATACAGGTAAAACCTCGAAAAAAAACGGGTCAAAAAAGAATGTTGTT</canonical>
            <polymorphic>TATCTTGTCTATGAACAAAGTTATAGCGCTTAAGCGTAAGCTTAACCTTTACTCTCAATCCTAAGCTTATGCGTTGACCTTCAGCTAGATATTGGACCCATAACTTTCTTCAAAATGTATATTTTTTAATAAAATAAATTGGATATGATAGAAAAACTCAAAAGCTATTAGATAATATTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTAAGAGTCAACCTAACATTAAGCGTTGACACTAAGCTTAAGCCTAGCCCTGTCTTAATTCCTTTCAAAATGAATATTTTTGAATCAATTAAAACAAATATGATAGAATTTAAAGAGCACTACAAAACGATACTAGTTGTCTTACGGTATCTTGTCTATGAACAAAGTTGTAGAGCTTAAGCCTAAGCTTAACCTTCCTAAGCCTACGCTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTKATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTTAATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCAAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCACCTATACAGGTAAAACCTCGAAAAAAAACGGGTCAAAAAAGAATGTTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCCTAAGCTTAACCTTCCTAA</pcr_primer_p1>
		<pcr_primer_p2>CGCTTAATGTTAGGTTGACTCT</pcr_primer_p2>
		<pcr_amplicon_size>204</pcr_amplicon_size>
		<canonical_amplicon>AGCCTAAGCTTAACCTTCCTAAGCCTACGCTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCG</canonical_amplicon>
		<polymorphic_amplicon>AGCCTAAGCTTAACCTTCCTAAGCCTACGCTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTKATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24582</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>225496</contig_pos>
        <strand></strand>
        <context>aaactcaaaa[T/G]ctattagata</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAA</left_flank>
        <right_flank>CTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGCGCTTAAGCGTAAGCTTAACCTTTACTCTCAATCCTAAGCTTATGCGTTGACCTTCAGCTAGATATTGGACCCATAACTTTCTTCAAAATGTATATTTTTTAATAAAATAAATTGGATATGATAGAAAAACTCAAAAGCTATTAGATAATATTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTAAGAGTCAACCTAACATTAAGCGTTGACACTAAGCTTAAGCCTAGCCCTGTCTTAATTCCTTTCAAAATGAATATTTTTGAATCAATTAAAACAAATATGATAGAATTTAAAGAGCACTACAAAACGATACTAGTTGTCTTACGGTATCTTGTCTATGAACAAAGTTGTAGAGCTTAAGCCTAAGCTTAACCTTCCTAAGCCTACGCTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTTAATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCAAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCACCTATACAGGTAAAACCTCGAAAAAAAACGGGTCAAAAAAGAATGTTGTTGTACAGATCTTCTCATAGAAGC</canonical>
            <polymorphic>ATAGCGCTTAAGCGTAAGCTTAACCTTTACTCTCAATCCTAAGCTTATGCGTTGACCTTCAGCTAGATATTGGACCCATAACTTTCTTCAAAATGTATATTTTTTAATAAAATAAATTGGATATGATAGAAAAACTCAAAAGCTATTAGATAATATTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTAAGAGTCAACCTAACATTAAGCGTTGACACTAAGCTTAAGCCTAGCCCTGTCTTAATTCCTTTCAAAATGAATATTTTTGAATCAATTAAAACAAATATGATAGAATTTAAAGAGCACTACAAAACGATACTAGTTGTCTTACGGTATCTTGTCTATGAACAAAGTTGTAGAGCTTAAGCCTAAGCTTAACCTTCCTAAGCCTACGCTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAAKCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTTAATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCAAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCACCTATACAGGTAAAACCTCGAAAAAAAACGGGTCAAAAAAGAATGTTGTTGTACAGATCTTCTCATAGAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCCTAAGCTTAACCTTCCTAA</pcr_primer_p1>
		<pcr_primer_p2>CGCTTAATGTTAGGTTGACTCT</pcr_primer_p2>
		<pcr_amplicon_size>204</pcr_amplicon_size>
		<canonical_amplicon>AGCCTAAGCTTAACCTTCCTAAGCCTACGCTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCG</canonical_amplicon>
		<polymorphic_amplicon>AGCCTAAGCTTAACCTTCCTAAGCCTACGCTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAAKCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24583</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>225516</contig_pos>
        <strand></strand>
        <context>aatactattt[A/G]aaaaactgta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTT</left_flank>
        <right_flank>AAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACCTTTACTCTCAATCCTAAGCTTATGCGTTGACCTTCAGCTAGATATTGGACCCATAACTTTCTTCAAAATGTATATTTTTTAATAAAATAAATTGGATATGATAGAAAAACTCAAAAGCTATTAGATAATATTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTAAGAGTCAACCTAACATTAAGCGTTGACACTAAGCTTAAGCCTAGCCCTGTCTTAATTCCTTTCAAAATGAATATTTTTGAATCAATTAAAACAAATATGATAGAATTTAAAGAGCACTACAAAACGATACTAGTTGTCTTACGGTATCTTGTCTATGAACAAAGTTGTAGAGCTTAAGCCTAAGCTTAACCTTCCTAAGCCTACGCTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTTAATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCAAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCACCTATACAGGTAAAACCTCGAAAAAAAACGGGTCAAAAAAGAATGTTGTTGTACAGATCTTCTCATAGAAGCTATTTTATTCAACACAGAGT</canonical>
            <polymorphic>TAACCTTTACTCTCAATCCTAAGCTTATGCGTTGACCTTCAGCTAGATATTGGACCCATAACTTTCTTCAAAATGTATATTTTTTAATAAAATAAATTGGATATGATAGAAAAACTCAAAAGCTATTAGATAATATTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTAAGAGTCAACCTAACATTAAGCGTTGACACTAAGCTTAAGCCTAGCCCTGTCTTAATTCCTTTCAAAATGAATATTTTTGAATCAATTAAAACAAATATGATAGAATTTAAAGAGCACTACAAAACGATACTAGTTGTCTTACGGTATCTTGTCTATGAACAAAGTTGTAGAGCTTAAGCCTAAGCTTAACCTTCCTAAGCCTACGCTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTRAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTTAATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCAAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCACCTATACAGGTAAAACCTCGAAAAAAAACGGGTCAAAAAAGAATGTTGTTGTACAGATCTTCTCATAGAAGCTATTTTATTCAACACAGAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>319 182 152 149 141 57</canonical_bands>
                <polymorphic_bands>319 239 152 149 141</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>280 84 73 67 61 58 56 47 40 40 34 24 21 20 19 19 18 17 12 10</canonical_bands>
                <polymorphic_bands>280 105 84 73 67 61 56 40 40 34 24 21 20 19 19 18 17 12 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCCTAAGCTTAACCTTCCTAA</pcr_primer_p1>
		<pcr_primer_p2>CGCTTAATGTTAGGTTGACTCT</pcr_primer_p2>
		<pcr_amplicon_size>204</pcr_amplicon_size>
		<canonical_amplicon>AGCCTAAGCTTAACCTTCCTAAGCCTACGCTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCG</canonical_amplicon>
		<polymorphic_amplicon>AGCCTAAGCTTAACCTTCCTAAGCCTACGCTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTRAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24584</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>225556</contig_pos>
        <strand>+</strand>
        <context>tacaGAGCTT[A/G]AGAGTCAACC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTT</left_flank>
        <right_flank>AGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTAGATATTGGACCCATAACTTTCTTCAAAATGTATATTTTTTAATAAAATAAATTGGATATGATAGAAAAACTCAAAAGCTATTAGATAATATTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTAAGAGTCAACCTAACATTAAGCGTTGACACTAAGCTTAAGCCTAGCCCTGTCTTAATTCCTTTCAAAATGAATATTTTTGAATCAATTAAAACAAATATGATAGAATTTAAAGAGCACTACAAAACGATACTAGTTGTCTTACGGTATCTTGTCTATGAACAAAGTTGTAGAGCTTAAGCCTAAGCTTAACCTTCCTAAGCCTACGCTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTTAATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCAAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCACCTATACAGGTAAAACCTCGAAAAAAAACGGGTCAAAAAAGAATGTTGTTGTACAGATCTTCTCATAGAAGCTATTTTATTCAACACAGAGTGAGAATGTATGAGGAGAGGGGGTGATATACATCCACCCCA</canonical>
            <polymorphic>AGCTAGATATTGGACCCATAACTTTCTTCAAAATGTATATTTTTTAATAAAATAAATTGGATATGATAGAAAAACTCAAAAGCTATTAGATAATATTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTAAGAGTCAACCTAACATTAAGCGTTGACACTAAGCTTAAGCCTAGCCCTGTCTTAATTCCTTTCAAAATGAATATTTTTGAATCAATTAAAACAAATATGATAGAATTTAAAGAGCACTACAAAACGATACTAGTTGTCTTACGGTATCTTGTCTATGAACAAAGTTGTAGAGCTTAAGCCTAAGCTTAACCTTCCTAAGCCTACGCTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTRAGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTTAATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCAAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCACCTATACAGGTAAAACCTCGAAAAAAAACGGGTCAAAAAAGAATGTTGTTGTACAGATCTTCTCATAGAAGCTATTTTATTCAACACAGAGTGAGAATGTATGAGGAGAGGGGGTGATATACATCCACCCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>321 182 145 139 139 37 37</canonical_bands>
                <polymorphic_bands>321 219 145 139 139 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTAGCCTTCAGCTAGCTATT</pcr_primer_p1>
		<pcr_primer_p2>TGCTCTTGTCCTGAAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>521</pcr_amplicon_size>
		<canonical_amplicon>CTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTTAATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCAAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCA</canonical_amplicon>
		<polymorphic_amplicon>CTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTRAGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTTAATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCAAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24585</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>225579</contig_pos>
        <strand>+</strand>
        <context>ACATTAAGCG[A/T]TGACACTAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCG</left_flank>
        <right_flank>TGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTCAAAATGTATATTTTTTAATAAAATAAATTGGATATGATAGAAAAACTCAAAAGCTATTAGATAATATTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTAAGAGTCAACCTAACATTAAGCGTTGACACTAAGCTTAAGCCTAGCCCTGTCTTAATTCCTTTCAAAATGAATATTTTTGAATCAATTAAAACAAATATGATAGAATTTAAAGAGCACTACAAAACGATACTAGTTGTCTTACGGTATCTTGTCTATGAACAAAGTTGTAGAGCTTAAGCCTAAGCTTAACCTTCCTAAGCCTACGCTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTTAATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCAAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCACCTATACAGGTAAAACCTCGAAAAAAAACGGGTCAAAAAAGAATGTTGTTGTACAGATCTTCTCATAGAAGCTATTTTATTCAACACAGAGTGAGAATGTATGAGGAGAGGGGGTGATATACATCCACCCCACTTTTTTTTCTCCTTGTTCTCTT</canonical>
            <polymorphic>TTCTTCAAAATGTATATTTTTTAATAAAATAAATTGGATATGATAGAAAAACTCAAAAGCTATTAGATAATATTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTAAGAGTCAACCTAACATTAAGCGTTGACACTAAGCTTAAGCCTAGCCCTGTCTTAATTCCTTTCAAAATGAATATTTTTGAATCAATTAAAACAAATATGATAGAATTTAAAGAGCACTACAAAACGATACTAGTTGTCTTACGGTATCTTGTCTATGAACAAAGTTGTAGAGCTTAAGCCTAAGCTTAACCTTCCTAAGCCTACGCTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCGWTGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTTAATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCAAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCACCTATACAGGTAAAACCTCGAAAAAAAACGGGTCAAAAAAGAATGTTGTTGTACAGATCTTCTCATAGAAGCTATTTTATTCAACACAGAGTGAGAATGTATGAGGAGAGGGGGTGATATACATCCACCCCACTTTTTTTTCTCCTTGTTCTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTAGCCTTCAGCTAGCTATT</pcr_primer_p1>
		<pcr_primer_p2>TGCTCTTGTCCTGAAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>521</pcr_amplicon_size>
		<canonical_amplicon>CTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTTAATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCAAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCA</canonical_amplicon>
		<polymorphic_amplicon>CTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCGWTGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTTAATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCAAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24586</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>225653</contig_pos>
        <strand></strand>
        <context>caaacaaact[T/G]ratatattgt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACT</left_flank>
        <right_flank>AATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTAAGAGTCAACCTAACATTAAGCGTTGACACTAAGCTTAAGCCTAGCCCTGTCTTAATTCCTTTCAAAATGAATATTTTTGAATCAATTAAAACAAATATGATAGAATTTAAAGAGCACTACAAAACGATACTAGTTGTCTTACGGTATCTTGTCTATGAACAAAGTTGTAGAGCTTAAGCCTAAGCTTAACCTTCCTAAGCCTACGCTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTTAATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCAAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCACCTATACAGGTAAAACCTCGAAAAAAAACGGGTCAAAAAAGAATGTTGTTGTACAGATCTTCTCATAGAAGCTATTTTATTCAACACAGAGTGAGAATGTATGAGGAGAGGGGGTGATATACATCCACCCCACTTTTTTTTCTCCTTGTTCTCTTCTATTCCGAAAAAATAACCGGTTTCTATCCTGAAGCAGAAGAATAGTGTCTCTAATTTCCCGTTGTCTAGGGAT</canonical>
            <polymorphic>ATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTAAGAGTCAACCTAACATTAAGCGTTGACACTAAGCTTAAGCCTAGCCCTGTCTTAATTCCTTTCAAAATGAATATTTTTGAATCAATTAAAACAAATATGATAGAATTTAAAGAGCACTACAAAACGATACTAGTTGTCTTACGGTATCTTGTCTATGAACAAAGTTGTAGAGCTTAAGCCTAAGCTTAACCTTCCTAAGCCTACGCTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTKAATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCAAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCACCTATACAGGTAAAACCTCGAAAAAAAACGGGTCAAAAAAGAATGTTGTTGTACAGATCTTCTCATAGAAGCTATTTTATTCAACACAGAGTGAGAATGTATGAGGAGAGGGGGTGATATACATCCACCCCACTTTTTTTTCTCCTTGTTCTCTTCTATTCCGAAAAAATAACCGGTTTCTATCCTGAAGCAGAAGAATAGTGTCTCTAATTTCCCGTTGTCTAGGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>417 73 67 61 58 47 40 40 34 24 21 20 19 19 18 17 12 10 3</canonical_bands>
                <polymorphic_bands>417 81 73 67 58 47 40 40 34 24 21 19 19 18 17 12 10 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTAGCCTTCAGCTAGCTATT</pcr_primer_p1>
		<pcr_primer_p2>TGCTCTTGTCCTGAAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>521</pcr_amplicon_size>
		<canonical_amplicon>CTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTTAATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCAAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCA</canonical_amplicon>
		<polymorphic_amplicon>CTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTKAATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCAAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24587</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>225654</contig_pos>
        <strand></strand>
        <context>aaacaaactk[A/G]atatattgta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTT</left_flank>
        <right_flank>ATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTAAGAGTCAACCTAACATTAAGCGTTGACACTAAGCTTAAGCCTAGCCCTGTCTTAATTCCTTTCAAAATGAATATTTTTGAATCAATTAAAACAAATATGATAGAATTTAAAGAGCACTACAAAACGATACTAGTTGTCTTACGGTATCTTGTCTATGAACAAAGTTGTAGAGCTTAAGCCTAAGCTTAACCTTCCTAAGCCTACGCTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTTAATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCAAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCACCTATACAGGTAAAACCTCGAAAAAAAACGGGTCAAAAAAGAATGTTGTTGTACAGATCTTCTCATAGAAGCTATTTTATTCAACACAGAGTGAGAATGTATGAGGAGAGGGGGTGATATACATCCACCCCACTTTTTTTTCTCCTTGTTCTCTTCTATTCCGAAAAAATAACCGGTTTCTATCCTGAAGCAGAAGAATAGTGTCTCTAATTTCCCGTTGTCTAGGGATA</canonical>
            <polymorphic>TTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTAAGAGTCAACCTAACATTAAGCGTTGACACTAAGCTTAAGCCTAGCCCTGTCTTAATTCCTTTCAAAATGAATATTTTTGAATCAATTAAAACAAATATGATAGAATTTAAAGAGCACTACAAAACGATACTAGTTGTCTTACGGTATCTTGTCTATGAACAAAGTTGTAGAGCTTAAGCCTAAGCTTAACCTTCCTAAGCCTACGCTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTTRATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCAAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCACCTATACAGGTAAAACCTCGAAAAAAAACGGGTCAAAAAAGAATGTTGTTGTACAGATCTTCTCATAGAAGCTATTTTATTCAACACAGAGTGAGAATGTATGAGGAGAGGGGGTGATATACATCCACCCCACTTTTTTTTCTCCTTGTTCTCTTCTATTCCGAAAAAATAACCGGTTTCTATCCTGAAGCAGAAGAATAGTGTCTCTAATTTCCCGTTGTCTAGGGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>418 73 67 61 58 47 40 40 34 24 21 20 19 19 18 17 12 10 2</canonical_bands>
                <polymorphic_bands>418 81 73 67 58 47 40 40 34 24 21 19 19 18 17 12 10 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTAGCCTTCAGCTAGCTATT</pcr_primer_p1>
		<pcr_primer_p2>TGCTCTTGTCCTGAAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>521</pcr_amplicon_size>
		<canonical_amplicon>CTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTTAATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCAAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCA</canonical_amplicon>
		<polymorphic_amplicon>CTTTAGCCTTCAGCTAGCTATTGGGCCCAGAACTTTCTTCAAAATCTATATTTTTAAATAAAATTAATTTTATATGATAGAAAAACTCAAAATCTATTAGATAATACTATTTAAAAAACTGTATCTTTTTTATGAGCAAAGTTACAGAGCTTGAGAGTCAACCTAACATTAAGCGATGACACTAAGCTTAAGCCTAGCTATTGGACCCATAACTTTCTTCAGAATCATTAGTTTTGAGCCAAACAAACTTRATATATTGTAGTAGAATTTAAGAGCTACAAGATAATACTATTTAAAAAACTGTAACTTGCTCATGAATGAAGTTACAGAGCTTAAGCCAAACGTAAGCCTAACCTTTGACCTCAAAACAGTTGTTTGACCCATAACTTTGTTCGTAGATTAGGTACAGTATACCAATTAGTACCATTTTGTAGTGCTTTTCAAGTTCTATGACGTCTTTTTTTTCAATTCAAAAATACTATTTTGAAAAAAGTTATGGTCAAAACTTCAGGACAAGAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24588</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>227984</contig_pos>
        <strand>+</strand>
        <context>AAAGTGTGGT[G/T]TTAGGGGTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGGATTTTTAACCGGTATTGGGAATTGAAATTGTACAAAAAAAGTGTGGT</left_flank>
        <right_flank>TTAGGGGTAAAATAGGATGAAAATTCAAGTTTTTCAGACAAAATTAGTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGCAACAAAAAAATTTTTTAAGAAAATATCCCGCAAACACTCTAATAGAACGCCACCCGGACCGTCCATTTTGAGCCTACATATCTCATTTTCGAGAGATATCAAAGTTTTGTAAACAGATAAAATGTAGCTGATATCATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTAAACGGCTTCAGGAGTGGCATTCTGTTGGAGTGCCCCTATACTGTTAACTTTGAGCCTATATATCTCACTTCTTTGGAAAGATATCAAAAAGTTTTCAACTAATAAAATATTTATCATGATATCAGCTACATTTTATCAGTTGATTACTTTTTGATATCTCTCACAGAAAATGAGATACATGGGCTCATATTTGACGATTCGGGAGGCGTTCTATAGAGTGTTTACGGTATTTTTTGGGGGATTTTTAACCGGTATTGGGAATTGAAATTGTACAAAAAAAGTGTGGTTTTAGGGGTAAAATAGGATGAAAATTCAAGTTTTTCAGACAAAATTAGTCTAGAAAGTTGGGAAAATGATAAAATATGTTTATTTTGAAATTTTGAAATTTTTCGAAAAAGCACTTTAAGAGATTTAAGGGGAATTTGGGTCCTTAGAGTGTTTTCTGGCTGAAATCAAGCTCAAAAATCGATTTTTACAACTCAAAAAATCTATAAAACCATGAAATAATCATGAAAATCGGGGTTCTTAGAAATTCGAAAAAATTCAAAAAAAAACTCTGAAATTTCAAAATTTCAGAAACTTCAAATTTGAGCATTTTTAAGGGAATATTGAGAGAAATACAACTCAGAAATCGATTTTTTAGCTTAAAATACCCTTAAAACCATTAAAAAACCAGAAATCGTGAATTTTGAAAAAATTCCAAAAATTCCAAAAAAAAGTTTTTTCAGAAATTTTCAGAATTTCTGAAAAACAGAGATTCCCCACTTCAAAATGATTCTAGAGCAAAA</canonical>
            <polymorphic>ATGGCAACAAAAAAATTTTTTAAGAAAATATCCCGCAAACACTCTAATAGAACGCCACCCGGACCGTCCATTTTGAGCCTACATATCTCATTTTCGAGAGATATCAAAGTTTTGTAAACAGATAAAATGTAGCTGATATCATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTAAACGGCTTCAGGAGTGGCATTCTGTTGGAGTGCCCCTATACTGTTAACTTTGAGCCTATATATCTCACTTCTTTGGAAAGATATCAAAAAGTTTTCAACTAATAAAATATTTATCATGATATCAGCTACATTTTATCAGTTGATTACTTTTTGATATCTCTCACAGAAAATGAGATACATGGGCTCATATTTGACGATTCGGGAGGCGTTCTATAGAGTGTTTACGGTATTTTTTGGGGGATTTTTAACCGGTATTGGGAATTGAAATTGTACAAAAAAAGTGTGGTKTTAGGGGTAAAATAGGATGAAAATTCAAGTTTTTCAGACAAAATTAGTCTAGAAAGTTGGGAAAATGATAAAATATGTTTATTTTGAAATTTTGAAATTTTTCGAAAAAGCACTTTAAGAGATTTAAGGGGAATTTGGGTCCTTAGAGTGTTTTCTGGCTGAAATCAAGCTCAAAAATCGATTTTTACAACTCAAAAAATCTATAAAACCATGAAATAATCATGAAAATCGGGGTTCTTAGAAATTCGAAAAAATTCAAAAAAAAACTCTGAAATTTCAAAATTTCAGAAACTTCAAATTTGAGCATTTTTAAGGGAATATTGAGAGAAATACAACTCAGAAATCGATTTTTTAGCTTAAAATACCCTTAAAACCATTAAAAAACCAGAAATCGTGAATTTTGAAAAAATTCCAAAAATTCCAAAAAAAAGTTTTTTCAGAAATTTTCAGAATTTCTGAAAAACAGAGATTCCCCACTTCAAAATGATTCTAGAGCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGATTTTTAACCGGTATTG</pcr_primer_p1>
		<pcr_primer_p2>AATCGATTTTTGAGCTTGATT</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>GGGATTTTTAACCGGTATTGGGAATTGAAATTGTACAAAAAAAGTGTGGTTTTAGGGGTAAAATAGGATGAAAATTCAAGTTTTTCAGACAAAATTAGTCTAGAAAGTTGGGAAAATGATAAAATATGTTTATTTTGAAATTTTGAAATTTTTCGAAAAAGCACTTTAAGAGATTTAAGGGGAATTTGGGTCCTTAGAGTGTTTTCTGGCTGAAATCAAGCTCAAAAATCGATT</canonical_amplicon>
		<polymorphic_amplicon>GGGATTTTTAACCGGTATTGGGAATTGAAATTGTACAAAAAAAGTGTGGTKTTAGGGGTAAAATAGGATGAAAATTCAAGTTTTTCAGACAAAATTAGTCTAGAAAGTTGGGAAAATGATAAAATATGTTTATTTTGAAATTTTGAAATTTTTCGAAAAAGCACTTTAAGAGATTTAAGGGGAATTTGGGTCCTTAGAGTGTTTTCTGGCTGAAATCAAGCTCAAAAATCGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24589</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>228013</contig_pos>
        <strand>+</strand>
        <context>GAAAATTCAA[A/G]TTTTTCAGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGTACAAAAAAAGTGTGGTTTTAGGGGTAAAATAGGATGAAAATTCAA</left_flank>
        <right_flank>TTTTTCAGACAAAATTAGTCTAGAAAGTTGGGAAAATGATAAAATATGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCCGCAAACACTCTAATAGAACGCCACCCGGACCGTCCATTTTGAGCCTACATATCTCATTTTCGAGAGATATCAAAGTTTTGTAAACAGATAAAATGTAGCTGATATCATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTAAACGGCTTCAGGAGTGGCATTCTGTTGGAGTGCCCCTATACTGTTAACTTTGAGCCTATATATCTCACTTCTTTGGAAAGATATCAAAAAGTTTTCAACTAATAAAATATTTATCATGATATCAGCTACATTTTATCAGTTGATTACTTTTTGATATCTCTCACAGAAAATGAGATACATGGGCTCATATTTGACGATTCGGGAGGCGTTCTATAGAGTGTTTACGGTATTTTTTGGGGGATTTTTAACCGGTATTGGGAATTGAAATTGTACAAAAAAAGTGTGGTTTTAGGGGTAAAATAGGATGAAAATTCAAGTTTTTCAGACAAAATTAGTCTAGAAAGTTGGGAAAATGATAAAATATGTTTATTTTGAAATTTTGAAATTTTTCGAAAAAGCACTTTAAGAGATTTAAGGGGAATTTGGGTCCTTAGAGTGTTTTCTGGCTGAAATCAAGCTCAAAAATCGATTTTTACAACTCAAAAAATCTATAAAACCATGAAATAATCATGAAAATCGGGGTTCTTAGAAATTCGAAAAAATTCAAAAAAAAACTCTGAAATTTCAAAATTTCAGAAACTTCAAATTTGAGCATTTTTAAGGGAATATTGAGAGAAATACAACTCAGAAATCGATTTTTTAGCTTAAAATACCCTTAAAACCATTAAAAAACCAGAAATCGTGAATTTTGAAAAAATTCCAAAAATTCCAAAAAAAAGTTTTTTCAGAAATTTTCAGAATTTCTGAAAAACAGAGATTCCCCACTTCAAAATGATTCTAGAGCAAAATTAAGCTTAAAAGTCAAAATTTCAGCTCA</canonical>
            <polymorphic>ATCCCGCAAACACTCTAATAGAACGCCACCCGGACCGTCCATTTTGAGCCTACATATCTCATTTTCGAGAGATATCAAAGTTTTGTAAACAGATAAAATGTAGCTGATATCATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTAAACGGCTTCAGGAGTGGCATTCTGTTGGAGTGCCCCTATACTGTTAACTTTGAGCCTATATATCTCACTTCTTTGGAAAGATATCAAAAAGTTTTCAACTAATAAAATATTTATCATGATATCAGCTACATTTTATCAGTTGATTACTTTTTGATATCTCTCACAGAAAATGAGATACATGGGCTCATATTTGACGATTCGGGAGGCGTTCTATAGAGTGTTTACGGTATTTTTTGGGGGATTTTTAACCGGTATTGGGAATTGAAATTGTACAAAAAAAGTGTGGTTTTAGGGGTAAAATAGGATGAAAATTCAARTTTTTCAGACAAAATTAGTCTAGAAAGTTGGGAAAATGATAAAATATGTTTATTTTGAAATTTTGAAATTTTTCGAAAAAGCACTTTAAGAGATTTAAGGGGAATTTGGGTCCTTAGAGTGTTTTCTGGCTGAAATCAAGCTCAAAAATCGATTTTTACAACTCAAAAAATCTATAAAACCATGAAATAATCATGAAAATCGGGGTTCTTAGAAATTCGAAAAAATTCAAAAAAAAACTCTGAAATTTCAAAATTTCAGAAACTTCAAATTTGAGCATTTTTAAGGGAATATTGAGAGAAATACAACTCAGAAATCGATTTTTTAGCTTAAAATACCCTTAAAACCATTAAAAAACCAGAAATCGTGAATTTTGAAAAAATTCCAAAAATTCCAAAAAAAAGTTTTTTCAGAAATTTTCAGAATTTCTGAAAAACAGAGATTCCCCACTTCAAAATGATTCTAGAGCAAAATTAAGCTTAAAAGTCAAAATTTCAGCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGAATTGAAATTGTACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCATGATTATTTCATGGTTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>GGGAATTGAAATTGTACAAAAAAAGTGTGGTTTTAGGGGTAAAATAGGATGAAAATTCAAGTTTTTCAGACAAAATTAGTCTAGAAAGTTGGGAAAATGATAAAATATGTTTATTTTGAAATTTTGAAATTTTTCGAAAAAGCACTTTAAGAGATTTAAGGGGAATTTGGGTCCTTAGAGTGTTTTCTGGCTGAAATCAAGCTCAAAAATCGATTTTTACAACTCAAAAAATCTATAAAACCATGAAATAATCATGAA</canonical_amplicon>
		<polymorphic_amplicon>GGGAATTGAAATTGTACAAAAAAAGTGTGGTTTTAGGGGTAAAATAGGATGAAAATTCAARTTTTTCAGACAAAATTAGTCTAGAAAGTTGGGAAAATGATAAAATATGTTTATTTTGAAATTTTGAAATTTTTCGAAAAAGCACTTTAAGAGATTTAAGGGGAATTTGGGTCCTTAGAGTGTTTTCTGGCTGAAATCAAGCTCAAAAATCGATTTTTACAACTCAAAAAATCTATAAAACCATGAAATAATCATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24590</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>228233</contig_pos>
        <strand>+</strand>
        <context>TAGAAATTCG[C/T]AAAAATTCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTATAAAACCATGAAATAATCATGAAAATCGGGGTTCTTAGAAATTCG</left_flank>
        <right_flank>AAAAATTCAAAAAAAAACTCTGAAATTTCAAAATTTCAGAAACTTCAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATACTGTTAACTTTGAGCCTATATATCTCACTTCTTTGGAAAGATATCAAAAAGTTTTCAACTAATAAAATATTTATCATGATATCAGCTACATTTTATCAGTTGATTACTTTTTGATATCTCTCACAGAAAATGAGATACATGGGCTCATATTTGACGATTCGGGAGGCGTTCTATAGAGTGTTTACGGTATTTTTTGGGGGATTTTTAACCGGTATTGGGAATTGAAATTGTACAAAAAAAGTGTGGTTTTAGGGGTAAAATAGGATGAAAATTCAAGTTTTTCAGACAAAATTAGTCTAGAAAGTTGGGAAAATGATAAAATATGTTTATTTTGAAATTTTGAAATTTTTCGAAAAAGCACTTTAAGAGATTTAAGGGGAATTTGGGTCCTTAGAGTGTTTTCTGGCTGAAATCAAGCTCAAAAATCGATTTTTACAACTCAAAAAATCTATAAAACCATGAAATAATCATGAAAATCGGGGTTCTTAGAAATTCGAAAAAATTCAAAAAAAAACTCTGAAATTTCAAAATTTCAGAAACTTCAAATTTGAGCATTTTTAAGGGAATATTGAGAGAAATACAACTCAGAAATCGATTTTTTAGCTTAAAATACCCTTAAAACCATTAAAAAACCAGAAATCGTGAATTTTGAAAAAATTCCAAAAATTCCAAAAAAAAGTTTTTTCAGAAATTTTCAGAATTTCTGAAAAACAGAGATTCCCCACTTCAAAATGATTCTAGAGCAAAATTAAGCTTAAAAGTCAAAATTTCAGCTCAAAATACACCTAAAACTAACGGATAATTATGAAAATCGAGTTTTTTGAAAAATTTAAAAAATTCAAAAAATATATTTTTTTCAGAAATTTTCAGTATTCAAAAAATATGGAATTTTCTCGTTTGAAAGTTGTTCTAGAGCAAAATAAAGCTCAGAAATCGATTTTTCAGTTCAAAGAACTCCTAAAACTATCGGATAATCATGAAAATCGAGTTTTTTTTT</canonical>
            <polymorphic>ATACTGTTAACTTTGAGCCTATATATCTCACTTCTTTGGAAAGATATCAAAAAGTTTTCAACTAATAAAATATTTATCATGATATCAGCTACATTTTATCAGTTGATTACTTTTTGATATCTCTCACAGAAAATGAGATACATGGGCTCATATTTGACGATTCGGGAGGCGTTCTATAGAGTGTTTACGGTATTTTTTGGGGGATTTTTAACCGGTATTGGGAATTGAAATTGTACAAAAAAAGTGTGGTTTTAGGGGTAAAATAGGATGAAAATTCAAGTTTTTCAGACAAAATTAGTCTAGAAAGTTGGGAAAATGATAAAATATGTTTATTTTGAAATTTTGAAATTTTTCGAAAAAGCACTTTAAGAGATTTAAGGGGAATTTGGGTCCTTAGAGTGTTTTCTGGCTGAAATCAAGCTCAAAAATCGATTTTTACAACTCAAAAAATCTATAAAACCATGAAATAATCATGAAAATCGGGGTTCTTAGAAATTCGYAAAAATTCAAAAAAAAACTCTGAAATTTCAAAATTTCAGAAACTTCAAATTTGAGCATTTTTAAGGGAATATTGAGAGAAATACAACTCAGAAATCGATTTTTTAGCTTAAAATACCCTTAAAACCATTAAAAAACCAGAAATCGTGAATTTTGAAAAAATTCCAAAAATTCCAAAAAAAAGTTTTTTCAGAAATTTTCAGAATTTCTGAAAAACAGAGATTCCCCACTTCAAAATGATTCTAGAGCAAAATTAAGCTTAAAAGTCAAAATTTCAGCTCAAAATACACCTAAAACTAACGGATAATTATGAAAATCGAGTTTTTTGAAAAATTTAAAAAATTCAAAAAATATATTTTTTTCAGAAATTTTCAGTATTCAAAAAATATGGAATTTTCTCGTTTGAAAGTTGTTCTAGAGCAAAATAAAGCTCAGAAATCGATTTTTCAGTTCAAAGAACTCCTAAAACTATCGGATAATCATGAAAATCGAGTTTTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>349 342 155 154</canonical_bands>
                <polymorphic_bands>349 342 309</polymorphic_bands>
            </assay>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>503 353 144</canonical_bands>
                <polymorphic_bands>647 353</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>354 220 122 98 76 68 50 12</canonical_bands>
                <polymorphic_bands>354 220 166 122 76 50 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTGGGTCCTTAGAGTGTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGGTTTTAAGGGTATTTTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATTTGGGTCCTTAGAGTGTTTTCTGGCTGAAATCAAGCTCAAAAATCGATTTTTACAACTCAAAAAATCTATAAAACCATGAAATAATCATGAAAATCGGGGTTCTTAGAAATTCGAAAAAATTCAAAAAAAAACTCTGAAATTTCAAAATTTCAGAAACTTCAAATTTGAGCATTTTTAAGGGAATATTGAGAGAAATACAACTCAGAAATCGATTTTTTAGCTTAAAATACCCTTAAAACCAT</canonical_amplicon>
		<polymorphic_amplicon>AATTTGGGTCCTTAGAGTGTTTTCTGGCTGAAATCAAGCTCAAAAATCGATTTTTACAACTCAAAAAATCTATAAAACCATGAAATAATCATGAAAATCGGGGTTCTTAGAAATTCGYAAAAATTCAAAAAAAAACTCTGAAATTTCAAAATTTCAGAAACTTCAAATTTGAGCATTTTTAAGGGAATATTGAGAGAAATACAACTCAGAAATCGATTTTTTAGCTTAAAATACCCTTAAAACCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24591</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>228301</contig_pos>
        <strand>+</strand>
        <context>TTTTTAAGGG[C/T]ATATTGAGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCTGAAATTTCAAAATTTCAGAAACTTCAAATTTGAGCATTTTTAAGGG</left_flank>
        <right_flank>ATATTGAGAGAAATACAACTCAGAAATCGATTTTTTAGCTTAAAATACCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATATTTATCATGATATCAGCTACATTTTATCAGTTGATTACTTTTTGATATCTCTCACAGAAAATGAGATACATGGGCTCATATTTGACGATTCGGGAGGCGTTCTATAGAGTGTTTACGGTATTTTTTGGGGGATTTTTAACCGGTATTGGGAATTGAAATTGTACAAAAAAAGTGTGGTTTTAGGGGTAAAATAGGATGAAAATTCAAGTTTTTCAGACAAAATTAGTCTAGAAAGTTGGGAAAATGATAAAATATGTTTATTTTGAAATTTTGAAATTTTTCGAAAAAGCACTTTAAGAGATTTAAGGGGAATTTGGGTCCTTAGAGTGTTTTCTGGCTGAAATCAAGCTCAAAAATCGATTTTTACAACTCAAAAAATCTATAAAACCATGAAATAATCATGAAAATCGGGGTTCTTAGAAATTCGAAAAAATTCAAAAAAAAACTCTGAAATTTCAAAATTTCAGAAACTTCAAATTTGAGCATTTTTAAGGGAATATTGAGAGAAATACAACTCAGAAATCGATTTTTTAGCTTAAAATACCCTTAAAACCATTAAAAAACCAGAAATCGTGAATTTTGAAAAAATTCCAAAAATTCCAAAAAAAAGTTTTTTCAGAAATTTTCAGAATTTCTGAAAAACAGAGATTCCCCACTTCAAAATGATTCTAGAGCAAAATTAAGCTTAAAAGTCAAAATTTCAGCTCAAAATACACCTAAAACTAACGGATAATTATGAAAATCGAGTTTTTTGAAAAATTTAAAAAATTCAAAAAATATATTTTTTTCAGAAATTTTCAGTATTCAAAAAATATGGAATTTTCTCGTTTGAAAGTTGTTCTAGAGCAAAATAAAGCTCAGAAATCGATTTTTCAGTTCAAAGAACTCCTAAAACTATCGGATAATCATGAAAATCGAGTTTTTTTTTGAAAAATCGAAAAAAACTCGAAAAATTCAGTTTTTTTTTCAGAATTTCAGAAAATAGGGATTTCACCA</canonical>
            <polymorphic>AATATTTATCATGATATCAGCTACATTTTATCAGTTGATTACTTTTTGATATCTCTCACAGAAAATGAGATACATGGGCTCATATTTGACGATTCGGGAGGCGTTCTATAGAGTGTTTACGGTATTTTTTGGGGGATTTTTAACCGGTATTGGGAATTGAAATTGTACAAAAAAAGTGTGGTTTTAGGGGTAAAATAGGATGAAAATTCAAGTTTTTCAGACAAAATTAGTCTAGAAAGTTGGGAAAATGATAAAATATGTTTATTTTGAAATTTTGAAATTTTTCGAAAAAGCACTTTAAGAGATTTAAGGGGAATTTGGGTCCTTAGAGTGTTTTCTGGCTGAAATCAAGCTCAAAAATCGATTTTTACAACTCAAAAAATCTATAAAACCATGAAATAATCATGAAAATCGGGGTTCTTAGAAATTCGAAAAAATTCAAAAAAAAACTCTGAAATTTCAAAATTTCAGAAACTTCAAATTTGAGCATTTTTAAGGGYATATTGAGAGAAATACAACTCAGAAATCGATTTTTTAGCTTAAAATACCCTTAAAACCATTAAAAAACCAGAAATCGTGAATTTTGAAAAAATTCCAAAAATTCCAAAAAAAAGTTTTTTCAGAAATTTTCAGAATTTCTGAAAAACAGAGATTCCCCACTTCAAAATGATTCTAGAGCAAAATTAAGCTTAAAAGTCAAAATTTCAGCTCAAAATACACCTAAAACTAACGGATAATTATGAAAATCGAGTTTTTTGAAAAATTTAAAAAATTCAAAAAATATATTTTTTTCAGAAATTTTCAGTATTCAAAAAATATGGAATTTTCTCGTTTGAAAGTTGTTCTAGAGCAAAATAAAGCTCAGAAATCGATTTTTCAGTTCAAAGAACTCCTAAAACTATCGGATAATCATGAAAATCGAGTTTTTTTTTGAAAAATCGAAAAAAACTCGAAAAATTCAGTTTTTTTTTCAGAATTTCAGAAAATAGGGATTTCACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 498 3</canonical_bands>
                <polymorphic_bands>997 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTGGGTCCTTAGAGTGTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGGTTTTAAGGGTATTTTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATTTGGGTCCTTAGAGTGTTTTCTGGCTGAAATCAAGCTCAAAAATCGATTTTTACAACTCAAAAAATCTATAAAACCATGAAATAATCATGAAAATCGGGGTTCTTAGAAATTCGAAAAAATTCAAAAAAAAACTCTGAAATTTCAAAATTTCAGAAACTTCAAATTTGAGCATTTTTAAGGGAATATTGAGAGAAATACAACTCAGAAATCGATTTTTTAGCTTAAAATACCCTTAAAACCAT</canonical_amplicon>
		<polymorphic_amplicon>AATTTGGGTCCTTAGAGTGTTTTCTGGCTGAAATCAAGCTCAAAAATCGATTTTTACAACTCAAAAAATCTATAAAACCATGAAATAATCATGAAAATCGGGGTTCTTAGAAATTCGAAAAAATTCAAAAAAAAACTCTGAAATTTCAAAATTTCAGAAACTTCAAATTTGAGCATTTTTAAGGGYATATTGAGAGAAATACAACTCAGAAATCGATTTTTTAGCTTAAAATACCCTTAAAACCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24592</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>229287</contig_pos>
        <strand>+</strand>
        <context>ATAATTAGGA[C/T]ttaattaagt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAAAAAAATTTTTTTTTTGAAAAATCAACACTTTATTGATAATTAGGA</left_flank>
        <right_flank>TTAATTAAGTGTTTAATTGACCAATTAATTAATTAATTACCTAGCAGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGGATTTCACCATTTCAGAAGGGTTCTAGAGTGAAATGAACTCTGAAAATCGAATTTTCAGCTCAAAATACCCCTAAAACAACCGGATATTCATGAAAATCGGAACTTTTTAAAGATTCAAAAAATTCAAGAAAAAATTTCAGCATTTTTACAGATAATCCCGTTTCGCCGCCACAATCTCTACAGTGCCCTTTGGTGGGCGGGGCAAACTATCGAAAACCAGAGAATCTCTCATCAGTTGCTCAACGGCCAACGCTTTGCCGATTTCTGGGTCGATTCTGAAAATTTTTTGAATTTTTCAAAAGAAATTTTTTTTTGAAATTTTTTAAATTATAAAAAAACCCAAAACTCACTTTCTGAGCGATAAATCTGCTCTGGGGGAGTACTGTAGCGCTTGCTGACGGGCTCGACGACGTTCTTCGATTTTTCTGAAATTTAAAAAAGTTTAGAAAAAAAATTTTTTTTTTGAAAAATCAACACTTTATTGATAATTAGGACTTAATTAAGTGTTTAATTGACCAATTAATTAATTAATTACCTAGCAGAATGATCATCGACACAGTCGAAGGCGTCATTAGTGCATGAGGGCTCCTCGACTCGGGATACTGTAGGTAGAATTGGTGGTTGAGAAGAGCTGAAAATTAGTTAATTAGGGTAATTAACAGCTAATAGATAGAAAAATTTTTGAAAAAAAATTTTTTTGAAAATTGAAAAATTACCGTTTCCTGCACTTGAAAATCCAAATTAGACAAAAAACGACTACTAAAAATGCGGCAGCGATGAGCAATAGGATTACGGCCAGTTCTGTGGTTACTGTCTCGAAATATCCCATTTTTAGGAAAATCTGAAATTTTGGAATTTTTGAAAAAAAAATCGAAATTTTGAGAGAGAAGAAATGAGAAAAATGAATATACCGTAAACACTCTAATAGAACACCACCCAAACTGTCAACTTTGAGCCTATATATCTCACTTCTTTCGAAAGATATCAAAAAGTTG</canonical>
            <polymorphic>TAGGGATTTCACCATTTCAGAAGGGTTCTAGAGTGAAATGAACTCTGAAAATCGAATTTTCAGCTCAAAATACCCCTAAAACAACCGGATATTCATGAAAATCGGAACTTTTTAAAGATTCAAAAAATTCAAGAAAAAATTTCAGCATTTTTACAGATAATCCCGTTTCGCCGCCACAATCTCTACAGTGCCCTTTGGTGGGCGGGGCAAACTATCGAAAACCAGAGAATCTCTCATCAGTTGCTCAACGGCCAACGCTTTGCCGATTTCTGGGTCGATTCTGAAAATTTTTTGAATTTTTCAAAAGAAATTTTTTTTTGAAATTTTTTAAATTATAAAAAAACCCAAAACTCACTTTCTGAGCGATAAATCTGCTCTGGGGGAGTACTGTAGCGCTTGCTGACGGGCTCGACGACGTTCTTCGATTTTTCTGAAATTTAAAAAAGTTTAGAAAAAAAATTTTTTTTTTGAAAAATCAACACTTTATTGATAATTAGGAYTTAATTAAGTGTTTAATTGACCAATTAATTAATTAATTACCTAGCAGAATGATCATCGACACAGTCGAAGGCGTCATTAGTGCATGAGGGCTCCTCGACTCGGGATACTGTAGGTAGAATTGGTGGTTGAGAAGAGCTGAAAATTAGTTAATTAGGGTAATTAACAGCTAATAGATAGAAAAATTTTTGAAAAAAAATTTTTTTGAAAATTGAAAAATTACCGTTTCCTGCACTTGAAAATCCAAATTAGACAAAAAACGACTACTAAAAATGCGGCAGCGATGAGCAATAGGATTACGGCCAGTTCTGTGGTTACTGTCTCGAAATATCCCATTTTTAGGAAAATCTGAAATTTTGGAATTTTTGAAAAAAAAATCGAAATTTTGAGAGAGAAGAAATGAGAAAAATGAATATACCGTAAACACTCTAATAGAACACCACCCAAACTGTCAACTTTGAGCCTATATATCTCACTTCTTTCGAAAGATATCAAAAAGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACGTTCTTCGATTTTTCTG</pcr_primer_p1>
		<pcr_primer_p2>CCCTAATTAACTAATTTTCAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GACGTTCTTCGATTTTTCTGAAATTTAAAAAAGTTTAGAAAAAAAATTTTTTTTTTGAAAAATCAACACTTTATTGATAATTAGGACTTAATTAAGTGTTTAATTGACCAATTAATTAATTAATTACCTAGCAGAATGATCATCGACACAGTCGAAGGCGTCATTAGTGCATGAGGGCTCCTCGACTCGGGATACTGTAGGTAGAATTGGTGGTTGAGAAGAGCTGAAAATTAGTTAATTAGGG</canonical_amplicon>
		<polymorphic_amplicon>GACGTTCTTCGATTTTTCTGAAATTTAAAAAAGTTTAGAAAAAAAATTTTTTTTTTGAAAAATCAACACTTTATTGATAATTAGGAYTTAATTAAGTGTTTAATTGACCAATTAATTAATTAATTACCTAGCAGAATGATCATCGACACAGTCGAAGGCGTCATTAGTGCATGAGGGCTCCTCGACTCGGGATACTGTAGGTAGAATTGGTGGTTGAGAAGAGCTGAAAATTAGTTAATTAGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24593</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>229357</contig_pos>
        <strand>+</strand>
        <context>CACAGTCGAA[G/T]GCGTCATTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACCAATTAATTAATTAATTACCTAGCAGAATGATCATCGACACAGTCGAA</left_flank>
        <right_flank>GCGTCATTAGTGCATGAGGGCTCCTCGACTCGGGATACTGTAGGTAGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACCCCTAAAACAACCGGATATTCATGAAAATCGGAACTTTTTAAAGATTCAAAAAATTCAAGAAAAAATTTCAGCATTTTTACAGATAATCCCGTTTCGCCGCCACAATCTCTACAGTGCCCTTTGGTGGGCGGGGCAAACTATCGAAAACCAGAGAATCTCTCATCAGTTGCTCAACGGCCAACGCTTTGCCGATTTCTGGGTCGATTCTGAAAATTTTTTGAATTTTTCAAAAGAAATTTTTTTTTGAAATTTTTTAAATTATAAAAAAACCCAAAACTCACTTTCTGAGCGATAAATCTGCTCTGGGGGAGTACTGTAGCGCTTGCTGACGGGCTCGACGACGTTCTTCGATTTTTCTGAAATTTAAAAAAGTTTAGAAAAAAAATTTTTTTTTTGAAAAATCAACACTTTATTGATAATTAGGACTTAATTAAGTGTTTAATTGACCAATTAATTAATTAATTACCTAGCAGAATGATCATCGACACAGTCGAAGGCGTCATTAGTGCATGAGGGCTCCTCGACTCGGGATACTGTAGGTAGAATTGGTGGTTGAGAAGAGCTGAAAATTAGTTAATTAGGGTAATTAACAGCTAATAGATAGAAAAATTTTTGAAAAAAAATTTTTTTGAAAATTGAAAAATTACCGTTTCCTGCACTTGAAAATCCAAATTAGACAAAAAACGACTACTAAAAATGCGGCAGCGATGAGCAATAGGATTACGGCCAGTTCTGTGGTTACTGTCTCGAAATATCCCATTTTTAGGAAAATCTGAAATTTTGGAATTTTTGAAAAAAAAATCGAAATTTTGAGAGAGAAGAAATGAGAAAAATGAATATACCGTAAACACTCTAATAGAACACCACCCAAACTGTCAACTTTGAGCCTATATATCTCACTTCTTTCGAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCATTATATCAGCAACATTTGATTAGTTGACCACTTTTTGATATCTTTTAC</canonical>
            <polymorphic>TACCCCTAAAACAACCGGATATTCATGAAAATCGGAACTTTTTAAAGATTCAAAAAATTCAAGAAAAAATTTCAGCATTTTTACAGATAATCCCGTTTCGCCGCCACAATCTCTACAGTGCCCTTTGGTGGGCGGGGCAAACTATCGAAAACCAGAGAATCTCTCATCAGTTGCTCAACGGCCAACGCTTTGCCGATTTCTGGGTCGATTCTGAAAATTTTTTGAATTTTTCAAAAGAAATTTTTTTTTGAAATTTTTTAAATTATAAAAAAACCCAAAACTCACTTTCTGAGCGATAAATCTGCTCTGGGGGAGTACTGTAGCGCTTGCTGACGGGCTCGACGACGTTCTTCGATTTTTCTGAAATTTAAAAAAGTTTAGAAAAAAAATTTTTTTTTTGAAAAATCAACACTTTATTGATAATTAGGACTTAATTAAGTGTTTAATTGACCAATTAATTAATTAATTACCTAGCAGAATGATCATCGACACAGTCGAAKGCGTCATTAGTGCATGAGGGCTCCTCGACTCGGGATACTGTAGGTAGAATTGGTGGTTGAGAAGAGCTGAAAATTAGTTAATTAGGGTAATTAACAGCTAATAGATAGAAAAATTTTTGAAAAAAAATTTTTTTGAAAATTGAAAAATTACCGTTTCCTGCACTTGAAAATCCAAATTAGACAAAAAACGACTACTAAAAATGCGGCAGCGATGAGCAATAGGATTACGGCCAGTTCTGTGGTTACTGTCTCGAAATATCCCATTTTTAGGAAAATCTGAAATTTTGGAATTTTTGAAAAAAAAATCGAAATTTTGAGAGAGAAGAAATGAGAAAAATGAATATACCGTAAACACTCTAATAGAACACCACCCAAACTGTCAACTTTGAGCCTATATATCTCACTTCTTTCGAAAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCATTATATCAGCAACATTTGATTAGTTGACCACTTTTTGATATCTTTTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACGTTCTTCGATTTTTCTG</pcr_primer_p1>
		<pcr_primer_p2>CCCTAATTAACTAATTTTCAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GACGTTCTTCGATTTTTCTGAAATTTAAAAAAGTTTAGAAAAAAAATTTTTTTTTTGAAAAATCAACACTTTATTGATAATTAGGACTTAATTAAGTGTTTAATTGACCAATTAATTAATTAATTACCTAGCAGAATGATCATCGACACAGTCGAAGGCGTCATTAGTGCATGAGGGCTCCTCGACTCGGGATACTGTAGGTAGAATTGGTGGTTGAGAAGAGCTGAAAATTAGTTAATTAGGG</canonical_amplicon>
		<polymorphic_amplicon>GACGTTCTTCGATTTTTCTGAAATTTAAAAAAGTTTAGAAAAAAAATTTTTTTTTTGAAAAATCAACACTTTATTGATAATTAGGACTTAATTAAGTGTTTAATTGACCAATTAATTAATTAATTACCTAGCAGAATGATCATCGACACAGTCGAAKGCGTCATTAGTGCATGAGGGCTCCTCGACTCGGGATACTGTAGGTAGAATTGGTGGTTGAGAAGAGCTGAAAATTAGTTAATTAGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24594</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>230374</contig_pos>
        <strand>+</strand>
        <context>CAAAATAATG[A/G]AATTTTTYKY</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAAAAGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATG</left_flank>
        <right_flank>AATTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCTCAAAGTTAGGGGTCCCACGTTAATCGACAAGGGCGCCTCCCCCTTCCCCAGAGAGACGCAAGAGGTGCCTTCCTAACTTCAAGCTCATTCATCTCGGTTACTGTAACAGATATCAAAAAGTGTTCAATTGATAAAATGTTTATCATGATATCAGCAATATTTCATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGATACATGGGCACAAAGTTTATGTCTTGGGTGGCATTCTATTAGAGTGTTTACGGTAAGTATAAGAAGAGCGTTTTGAAAAATTTTAGAAACAAAATTCTGAGATTTTTCTAGGAAATCTGGAAATTTAAAAGAAAGTTTCGAAATTTTTTGAAGAGCTCGGAAAAGAAAGTGGGCGGAGCCAAGAAATAAACTAATCGGATTAAAAAATTATTTGAAAAAGGGGCGGAGCTTAATTGGACCAAAAAAAAAGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACTTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATT</canonical>
            <polymorphic>GGCTCAAAGTTAGGGGTCCCACGTTAATCGACAAGGGCGCCTCCCCCTTCCCCAGAGAGACGCAAGAGGTGCCTTCCTAACTTCAAGCTCATTCATCTCGGTTACTGTAACAGATATCAAAAAGTGTTCAATTGATAAAATGTTTATCATGATATCAGCAATATTTCATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGATACATGGGCACAAAGTTTATGTCTTGGGTGGCATTCTATTAGAGTGTTTACGGTAAGTATAAGAAGAGCGTTTTGAAAAATTTTAGAAACAAAATTCTGAGATTTTTCTAGGAAATCTGGAAATTTAAAAGAAAGTTTCGAAATTTTTTGAAGAGCTCGGAAAAGAAAGTGGGCGGAGCCAAGAAATAAACTAATCGGATTAAAAAATTATTTGAAAAAGGGGCGGAGCTTAATTGGACCAAAAAAAAAGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGRAATTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACTTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>286 168 151 97 79 59 36 34 29 27 20 14</canonical_bands>
                <polymorphic_bands>286 187 168 97 79 59 34 29 27 20 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGAGCCAAGAAATAAACTA</pcr_primer_p1>
		<pcr_primer_p2>TCAAAATGTGTTTTGAAGTCAG</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>CGGAGCCAAGAAATAAACTAATCGGATTAAAAAATTATTTGAAAAAGGGGCGGAGCTTAATTGGACCAAAAAAAAAGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGA</canonical_amplicon>
		<polymorphic_amplicon>CGGAGCCAAGAAATAAACTAATCGGATTAAAAAATTATTTGAAAAAGGGGCGGAGCTTAATTGGACCAAAAAAAAAGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGRAATTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24595</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>230382</contig_pos>
        <strand>+</strand>
        <context>TGRAATTTTT[C/T]KYRATTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTT</left_flank>
        <right_flank>TTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTAGGGGTCCCACGTTAATCGACAAGGGCGCCTCCCCCTTCCCCAGAGAGACGCAAGAGGTGCCTTCCTAACTTCAAGCTCATTCATCTCGGTTACTGTAACAGATATCAAAAAGTGTTCAATTGATAAAATGTTTATCATGATATCAGCAATATTTCATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGATACATGGGCACAAAGTTTATGTCTTGGGTGGCATTCTATTAGAGTGTTTACGGTAAGTATAAGAAGAGCGTTTTGAAAAATTTTAGAAACAAAATTCTGAGATTTTTCTAGGAAATCTGGAAATTTAAAAGAAAGTTTCGAAATTTTTTGAAGAGCTCGGAAAAGAAAGTGGGCGGAGCCAAGAAATAAACTAATCGGATTAAAAAATTATTTGAAAAAGGGGCGGAGCTTAATTGGACCAAAAAAAAAGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACTTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAA</canonical>
            <polymorphic>GTTAGGGGTCCCACGTTAATCGACAAGGGCGCCTCCCCCTTCCCCAGAGAGACGCAAGAGGTGCCTTCCTAACTTCAAGCTCATTCATCTCGGTTACTGTAACAGATATCAAAAAGTGTTCAATTGATAAAATGTTTATCATGATATCAGCAATATTTCATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGATACATGGGCACAAAGTTTATGTCTTGGGTGGCATTCTATTAGAGTGTTTACGGTAAGTATAAGAAGAGCGTTTTGAAAAATTTTAGAAACAAAATTCTGAGATTTTTCTAGGAAATCTGGAAATTTAAAAGAAAGTTTCGAAATTTTTTGAAGAGCTCGGAAAAGAAAGTGGGCGGAGCCAAGAAATAAACTAATCGGATTAAAAAATTATTTGAAAAAGGGGCGGAGCTTAATTGGACCAAAAAAAAAGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTYTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACTTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGGACAATTCTAGACATATTGA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATAGGTTGCCGTAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTYTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24596</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>230383</contig_pos>
        <strand>+</strand>
        <context>GRAATTTTTY[G/T]YRATTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTC</left_flank>
        <right_flank>TAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAGGGGTCCCACGTTAATCGACAAGGGCGCCTCCCCCTTCCCCAGAGAGACGCAAGAGGTGCCTTCCTAACTTCAAGCTCATTCATCTCGGTTACTGTAACAGATATCAAAAAGTGTTCAATTGATAAAATGTTTATCATGATATCAGCAATATTTCATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGATACATGGGCACAAAGTTTATGTCTTGGGTGGCATTCTATTAGAGTGTTTACGGTAAGTATAAGAAGAGCGTTTTGAAAAATTTTAGAAACAAAATTCTGAGATTTTTCTAGGAAATCTGGAAATTTAAAAGAAAGTTTCGAAATTTTTTGAAGAGCTCGGAAAAGAAAGTGGGCGGAGCCAAGAAATAAACTAATCGGATTAAAAAATTATTTGAAAAAGGGGCGGAGCTTAATTGGACCAAAAAAAAAGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACTTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAAG</canonical>
            <polymorphic>TTAGGGGTCCCACGTTAATCGACAAGGGCGCCTCCCCCTTCCCCAGAGAGACGCAAGAGGTGCCTTCCTAACTTCAAGCTCATTCATCTCGGTTACTGTAACAGATATCAAAAAGTGTTCAATTGATAAAATGTTTATCATGATATCAGCAATATTTCATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGATACATGGGCACAAAGTTTATGTCTTGGGTGGCATTCTATTAGAGTGTTTACGGTAAGTATAAGAAGAGCGTTTTGAAAAATTTTAGAAACAAAATTCTGAGATTTTTCTAGGAAATCTGGAAATTTAAAAGAAAGTTTCGAAATTTTTTGAAGAGCTCGGAAAAGAAAGTGGGCGGAGCCAAGAAATAAACTAATCGGATTAAAAAATTATTTGAAAAAGGGGCGGAGCTTAATTGGACCAAAAAAAAAGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCKTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACTTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>390 309 75 71 71 30 30 15 9</canonical_bands>
                <polymorphic_bands>390 309 142 75 30 30 15 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGGACAATTCTAGACATATTGA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATAGGTTGCCGTAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCKTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24597</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>230384</contig_pos>
        <strand>+</strand>
        <context>RAATTTTTYK[C/T]RATTTTTTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCT</left_flank>
        <right_flank>AATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGGGGTCCCACGTTAATCGACAAGGGCGCCTCCCCCTTCCCCAGAGAGACGCAAGAGGTGCCTTCCTAACTTCAAGCTCATTCATCTCGGTTACTGTAACAGATATCAAAAAGTGTTCAATTGATAAAATGTTTATCATGATATCAGCAATATTTCATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGATACATGGGCACAAAGTTTATGTCTTGGGTGGCATTCTATTAGAGTGTTTACGGTAAGTATAAGAAGAGCGTTTTGAAAAATTTTAGAAACAAAATTCTGAGATTTTTCTAGGAAATCTGGAAATTTAAAAGAAAGTTTCGAAATTTTTTGAAGAGCTCGGAAAAGAAAGTGGGCGGAGCCAAGAAATAAACTAATCGGATTAAAAAATTATTTGAAAAAGGGGCGGAGCTTAATTGGACCAAAAAAAAAGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACTTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAAGA</canonical>
            <polymorphic>TAGGGGTCCCACGTTAATCGACAAGGGCGCCTCCCCCTTCCCCAGAGAGACGCAAGAGGTGCCTTCCTAACTTCAAGCTCATTCATCTCGGTTACTGTAACAGATATCAAAAAGTGTTCAATTGATAAAATGTTTATCATGATATCAGCAATATTTCATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGATACATGGGCACAAAGTTTATGTCTTGGGTGGCATTCTATTAGAGTGTTTACGGTAAGTATAAGAAGAGCGTTTTGAAAAATTTTAGAAACAAAATTCTGAGATTTTTCTAGGAAATCTGGAAATTTAAAAGAAAGTTTCGAAATTTTTTGAAGAGCTCGGAAAAGAAAGTGGGCGGAGCCAAGAAATAAACTAATCGGATTAAAAAATTATTTGAAAAAGGGGCGGAGCTTAATTGGACCAAAAAAAAAGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTYAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACTTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>390 309 75 71 71 30 30 14 10</canonical_bands>
                <polymorphic_bands>390 309 142 75 30 30 14 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGACAATTCTAGACATATTGACA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATAGGTTGCCGTAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>AGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTYAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24598</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>230385</contig_pos>
        <strand>+</strand>
        <context>AATTTTTYKY[A/G]ATTTTTTGCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTT</left_flank>
        <right_flank>ATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGGGTCCCACGTTAATCGACAAGGGCGCCTCCCCCTTCCCCAGAGAGACGCAAGAGGTGCCTTCCTAACTTCAAGCTCATTCATCTCGGTTACTGTAACAGATATCAAAAAGTGTTCAATTGATAAAATGTTTATCATGATATCAGCAATATTTCATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGATACATGGGCACAAAGTTTATGTCTTGGGTGGCATTCTATTAGAGTGTTTACGGTAAGTATAAGAAGAGCGTTTTGAAAAATTTTAGAAACAAAATTCTGAGATTTTTCTAGGAAATCTGGAAATTTAAAAGAAAGTTTCGAAATTTTTTGAAGAGCTCGGAAAAGAAAGTGGGCGGAGCCAAGAAATAAACTAATCGGATTAAAAAATTATTTGAAAAAGGGGCGGAGCTTAATTGGACCAAAAAAAAAGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACTTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAAGAG</canonical>
            <polymorphic>AGGGGTCCCACGTTAATCGACAAGGGCGCCTCCCCCTTCCCCAGAGAGACGCAAGAGGTGCCTTCCTAACTTCAAGCTCATTCATCTCGGTTACTGTAACAGATATCAAAAAGTGTTCAATTGATAAAATGTTTATCATGATATCAGCAATATTTCATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGATACATGGGCACAAAGTTTATGTCTTGGGTGGCATTCTATTAGAGTGTTTACGGTAAGTATAAGAAGAGCGTTTTGAAAAATTTTAGAAACAAAATTCTGAGATTTTTCTAGGAAATCTGGAAATTTAAAAGAAAGTTTCGAAATTTTTTGAAGAGCTCGGAAAAGAAAGTGGGCGGAGCCAAGAAATAAACTAATCGGATTAAAAAATTATTTGAAAAAGGGGCGGAGCTTAATTGGACCAAAAAAAAAGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTTRATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACTTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>390 309 75 71 71 30 30 13 11</canonical_bands>
                <polymorphic_bands>390 309 142 75 30 30 13 11</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>157 118 107 97 79 64 51 39 35 34 33 29 26 26 24 22 20 14 10 10 5</canonical_bands>
                <polymorphic_bands>157 118 107 97 79 64 51 39 36 35 34 33 29 26 24 22 20 14 10 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGACAATTCTAGACATATTGACA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATAGGTTGCCGTAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>AGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTTRATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24599</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>230426</contig_pos>
        <strand>+</strand>
        <context>TGAAACGGAG[A/G]GCCCTTCTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAG</left_flank>
        <right_flank>GCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAGAGACGCAAGAGGTGCCTTCCTAACTTCAAGCTCATTCATCTCGGTTACTGTAACAGATATCAAAAAGTGTTCAATTGATAAAATGTTTATCATGATATCAGCAATATTTCATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGATACATGGGCACAAAGTTTATGTCTTGGGTGGCATTCTATTAGAGTGTTTACGGTAAGTATAAGAAGAGCGTTTTGAAAAATTTTAGAAACAAAATTCTGAGATTTTTCTAGGAAATCTGGAAATTTAAAAGAAAGTTTCGAAATTTTTTGAAGAGCTCGGAAAAGAAAGTGGGCGGAGCCAAGAAATAAACTAATCGGATTAAAAAATTATTTGAAAAAGGGGCGGAGCTTAATTGGACCAAAAAAAAAGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACTTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAAGAGTTTAGAAGGTCCTTTTTGAAAGTTTTAGAAAGGGAAGAAGA</canonical>
            <polymorphic>CAGAGAGACGCAAGAGGTGCCTTCCTAACTTCAAGCTCATTCATCTCGGTTACTGTAACAGATATCAAAAAGTGTTCAATTGATAAAATGTTTATCATGATATCAGCAATATTTCATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGATACATGGGCACAAAGTTTATGTCTTGGGTGGCATTCTATTAGAGTGTTTACGGTAAGTATAAGAAGAGCGTTTTGAAAAATTTTAGAAACAAAATTCTGAGATTTTTCTAGGAAATCTGGAAATTTAAAAGAAAGTTTCGAAATTTTTTGAAGAGCTCGGAAAAGAAAGTGGGCGGAGCCAAGAAATAAACTAATCGGATTAAAAAATTATTTGAAAAAGGGGCGGAGCTTAATTGGACCAAAAAAAAAGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGRGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACTTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAAGAGTTTAGAAGGTCCTTTTTGAAAGTTTTAGAAAGGGAAGAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>382 313 190 80 18 17</canonical_bands>
                <polymorphic_bands>382 313 208 80 17</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>382 190 166 147 80 18 17</canonical_bands>
                <polymorphic_bands>382 208 166 147 80 17</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>300 276 117 80 64 50 35 23 20 18 17</canonical_bands>
                <polymorphic_bands>300 276 135 80 64 50 35 23 20 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGACAATTCTAGACATATTGACA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATAGGTTGCCGTAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>AGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGRGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24600</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>230458</contig_pos>
        <strand>+</strand>
        <context>CTTCTATTAA[A/T]ACCCGGGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAA</left_flank>
        <right_flank>ACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCTCATTCATCTCGGTTACTGTAACAGATATCAAAAAGTGTTCAATTGATAAAATGTTTATCATGATATCAGCAATATTTCATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGATACATGGGCACAAAGTTTATGTCTTGGGTGGCATTCTATTAGAGTGTTTACGGTAAGTATAAGAAGAGCGTTTTGAAAAATTTTAGAAACAAAATTCTGAGATTTTTCTAGGAAATCTGGAAATTTAAAAGAAAGTTTCGAAATTTTTTGAAGAGCTCGGAAAAGAAAGTGGGCGGAGCCAAGAAATAAACTAATCGGATTAAAAAATTATTTGAAAAAGGGGCGGAGCTTAATTGGACCAAAAAAAAAGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACTTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAAGAGTTTAGAAGGTCCTTTTTGAAAGTTTTAGAAAGGGAAGAAGATGGGAGAGTGGGGGTCAATAGAAAAGGGAAAA</canonical>
            <polymorphic>AAGCTCATTCATCTCGGTTACTGTAACAGATATCAAAAAGTGTTCAATTGATAAAATGTTTATCATGATATCAGCAATATTTCATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGATACATGGGCACAAAGTTTATGTCTTGGGTGGCATTCTATTAGAGTGTTTACGGTAAGTATAAGAAGAGCGTTTTGAAAAATTTTAGAAACAAAATTCTGAGATTTTTCTAGGAAATCTGGAAATTTAAAAGAAAGTTTCGAAATTTTTTGAAGAGCTCGGAAAAGAAAGTGGGCGGAGCCAAGAAATAAACTAATCGGATTAAAAAATTATTTGAAAAAGGGGCGGAGCTTAATTGGACCAAAAAAAAAGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAAWACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACTTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAAGAGTTTAGAAGGTCCTTTTTGAAAGTTTTAGAAAGGGAAGAAGATGGGAGAGTGGGGGTCAATAGAAAAGGGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGACAATTCTAGACATATTGACA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATAGGTTGCCGTAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>AGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAAWACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24601</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>230488</contig_pos>
        <strand>+</strand>
        <context>AAAAAGTACG[A/G]AAATTTTCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACG</left_flank>
        <right_flank>AAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCAAAAAGTGTTCAATTGATAAAATGTTTATCATGATATCAGCAATATTTCATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGATACATGGGCACAAAGTTTATGTCTTGGGTGGCATTCTATTAGAGTGTTTACGGTAAGTATAAGAAGAGCGTTTTGAAAAATTTTAGAAACAAAATTCTGAGATTTTTCTAGGAAATCTGGAAATTTAAAAGAAAGTTTCGAAATTTTTTGAAGAGCTCGGAAAAGAAAGTGGGCGGAGCCAAGAAATAAACTAATCGGATTAAAAAATTATTTGAAAAAGGGGCGGAGCTTAATTGGACCAAAAAAAAAGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACTTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAAGAGTTTAGAAGGTCCTTTTTGAAAGTTTTAGAAAGGGAAGAAGATGGGAGAGTGGGGGTCAATAGAAAAGGGAAAAAAAGGGTCCAAGGGGGAAAAATGACCAGTT</canonical>
            <polymorphic>TATCAAAAAGTGTTCAATTGATAAAATGTTTATCATGATATCAGCAATATTTCATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGATACATGGGCACAAAGTTTATGTCTTGGGTGGCATTCTATTAGAGTGTTTACGGTAAGTATAAGAAGAGCGTTTTGAAAAATTTTAGAAACAAAATTCTGAGATTTTTCTAGGAAATCTGGAAATTTAAAAGAAAGTTTCGAAATTTTTTGAAGAGCTCGGAAAAGAAAGTGGGCGGAGCCAAGAAATAAACTAATCGGATTAAAAAATTATTTGAAAAAGGGGCGGAGCTTAATTGGACCAAAAAAAAAGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGRAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACTTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAAGAGTTTAGAAGGTCCTTTTTGAAAGTTTTAGAAAGGGAAGAAGATGGGAGAGTGGGGGTCAATAGAAAAGGGAAAAAAAGGGTCCAAGGGGGAAAAATGACCAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTAGAGGGGGCTCTTCTATTA</pcr_primer_p1>
		<pcr_primer_p2>TAATCCGCTTATATTTCTTCACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACTTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTA</canonical_amplicon>
		<polymorphic_amplicon>ATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGRAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACTTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24602</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>230827</contig_pos>
        <strand>+</strand>
        <context>TCCAGACTTT[C/T]TAGGATGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTT</left_flank>
        <right_flank>TAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACTTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAAGAGTTTAGAAGGTCCTTTTTGAAAGTTTTAGAAAGGGAAGAAGATGGGAGAGTGGGGGTCAATAGAAAAGGGAAAAAAAGGGTCCAAGGGGGAAAAATGACCAGTTTCCGGTGGGAAAAATGGGAAAAAGCAGTTCAAGACACTAGATTTTTAGATTTAAAATAGCTCAAAATTGGTCCAAAACTAACGAAAAACGATTTTTCATTCTAAAACCTCTATTTTCACCTTTTTACCCACACTTTCAGAGCTTTTAACCCCGATTTTCGAATTGCCCGCCCTCGAAAACCCCCAAAAAACATTTTTTTAAAAAAATTGCCACCGGTGGGATTCGAACCCGAGACCCCTAGATCCAAATTCCTTCGTCGAAAATCCCACTAGGCCATATGAGCAATTTTTTAAAAAATTGCTAGAAAATTGATGTTTGGGTCAAAAATTAGGTTTTAAA</canonical>
            <polymorphic>AAAAGGACAATTCTAGACATATTGACAGGAAGATGGCAAAATAATGGAATTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACTTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTYTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAAGAGTTTAGAAGGTCCTTTTTGAAAGTTTTAGAAAGGGAAGAAGATGGGAGAGTGGGGGTCAATAGAAAAGGGAAAAAAAGGGTCCAAGGGGGAAAAATGACCAGTTTCCGGTGGGAAAAATGGGAAAAAGCAGTTCAAGACACTAGATTTTTAGATTTAAAATAGCTCAAAATTGGTCCAAAACTAACGAAAAACGATTTTTCATTCTAAAACCTCTATTTTCACCTTTTTACCCACACTTTCAGAGCTTTTAACCCCGATTTTCGAATTGCCCGCCCTCGAAAACCCCCAAAAAACATTTTTTTAAAAAAATTGCCACCGGTGGGATTCGAACCCGAGACCCCTAGATCCAAATTCCTTCGTCGAAAATCCCACTAGGCCATATGAGCAATTTTTTAAAAAATTGCTAGAAAATTGATGTTTGGGTCAAAAATTAGGTTTTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>263 201 198 126 98 38 32 31 13</canonical_bands>
                <polymorphic_bands>296 263 201 126 38 32 31 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGAAATATAAGCGGATTACG</pcr_primer_p1>
		<pcr_primer_p2>AACTTTCAAAAAGGACCTTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAAGAGTTTAGAAGGTCCTTTTTGAAAGTT</canonical_amplicon>
		<polymorphic_amplicon>GAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTYTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAAGAGTTTAGAAGGTCCTTTTTGAAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24603</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>230876</contig_pos>
        <strand>+</strand>
        <context>ATTTTTATTT[C/T]AAAAAARAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTT</left_flank>
        <right_flank>AAAAAAGAGTTTAGAAGGTCCTTTTTGAAAGTTTTAGAAAGGGAAGAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACTTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAAGAGTTTAGAAGGTCCTTTTTGAAAGTTTTAGAAAGGGAAGAAGATGGGAGAGTGGGGGTCAATAGAAAAGGGAAAAAAAGGGTCCAAGGGGGAAAAATGACCAGTTTCCGGTGGGAAAAATGGGAAAAAGCAGTTCAAGACACTAGATTTTTAGATTTAAAATAGCTCAAAATTGGTCCAAAACTAACGAAAAACGATTTTTCATTCTAAAACCTCTATTTTCACCTTTTTACCCACACTTTCAGAGCTTTTAACCCCGATTTTCGAATTGCCCGCCCTCGAAAACCCCCAAAAAACATTTTTTTAAAAAAATTGCCACCGGTGGGATTCGAACCCGAGACCCCTAGATCCAAATTCCTTCGTCGAAAATCCCACTAGGCCATATGAGCAATTTTTTAAAAAATTGCTAGAAAATTGATGTTTGGGTCAAAAATTAGGTTTTAAAAGGGTTTTAGGCAATCTTTGGCTCCTTTGAGTGATTTTCCAGCTATTTT</canonical>
            <polymorphic>TTTTTCTTAATTTTTTGCGATTTTTAGCGTTGAGAATTTTGAAACGGAGAGCCCTTCTATTAGAGGGGGCTCTTCTATTAATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACTTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTYAAAAAAGAGTTTAGAAGGTCCTTTTTGAAAGTTTTAGAAAGGGAAGAAGATGGGAGAGTGGGGGTCAATAGAAAAGGGAAAAAAAGGGTCCAAGGGGGAAAAATGACCAGTTTCCGGTGGGAAAAATGGGAAAAAGCAGTTCAAGACACTAGATTTTTAGATTTAAAATAGCTCAAAATTGGTCCAAAACTAACGAAAAACGATTTTTCATTCTAAAACCTCTATTTTCACCTTTTTACCCACACTTTCAGAGCTTTTAACCCCGATTTTCGAATTGCCCGCCCTCGAAAACCCCCAAAAAACATTTTTTTAAAAAAATTGCCACCGGTGGGATTCGAACCCGAGACCCCTAGATCCAAATTCCTTCGTCGAAAATCCCACTAGGCCATATGAGCAATTTTTTAAAAAATTGCTAGAAAATTGATGTTTGGGTCAAAAATTAGGTTTTAAAAGGGTTTTAGGCAATCTTTGGCTCCTTTGAGTGATTTTCCAGCTATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 165 147 92 52 45</canonical_bands>
                <polymorphic_bands>664 147 92 52 45</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>390 165 94 92 71 53 53 45 30 7</canonical_bands>
                <polymorphic_bands>390 195 94 92 71 53 53 45 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCAGAACAGGAGTGAATATAACTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTCTATTGACCCCCACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAAGAGTTTAGAAGGTCCTTTTTGAAAGTTTTAGAAAGGGAAGAAGATGGGAGAGTGGGGGTCAATAGAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTYAAAAAAGAGTTTAGAAGGTCCTTTTTGAAAGTTTTAGAAAGGGAAGAAGATGGGAGAGTGGGGGTCAATAGAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24604</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>230955</contig_pos>
        <strand>+</strand>
        <context>TAGAAAAGGG[G/T]AAAAAAGGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGTTTTAGAAAGGGAAGAAGATGGGAGAGTGGGGGTCAATAGAAAAGGG</left_flank>
        <right_flank>AAAAAAGGGTCCAAGGGGGAAAAATGACCAGTTTCCGGTGGGAAAAATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACTTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAAGAGTTTAGAAGGTCCTTTTTGAAAGTTTTAGAAAGGGAAGAAGATGGGAGAGTGGGGGTCAATAGAAAAGGGAAAAAAAGGGTCCAAGGGGGAAAAATGACCAGTTTCCGGTGGGAAAAATGGGAAAAAGCAGTTCAAGACACTAGATTTTTAGATTTAAAATAGCTCAAAATTGGTCCAAAACTAACGAAAAACGATTTTTCATTCTAAAACCTCTATTTTCACCTTTTTACCCACACTTTCAGAGCTTTTAACCCCGATTTTCGAATTGCCCGCCCTCGAAAACCCCCAAAAAACATTTTTTTAAAAAAATTGCCACCGGTGGGATTCGAACCCGAGACCCCTAGATCCAAATTCCTTCGTCGAAAATCCCACTAGGCCATATGAGCAATTTTTTAAAAAATTGCTAGAAAATTGATGTTTGGGTCAAAAATTAGGTTTTAAAAGGGTTTTAGGCAATCTTTGGCTCCTTTGAGTGATTTTCCAGCTATTTTCGAGGATTTTCATTTTAAAATCCATAAGTTCACTTTTTAGAAAGGCTTAAAAGTTCAATTTTCTTTTCACAAAAAACAA</canonical>
            <polymorphic>AATACCCGGGTTTTTTCCACTGAAAAAGTACGGAAATTTTCTGACTTCAAAACACATTTTGAAGGGGGGGCCCTTCTGTTAGAGGAGCCCTTCTAATACAGGTTTTACGGCAACCTATTTTTCAAATGAAAAATTTTAGAACTTGTTCTAGAAAGTTCTCGAAAAACTTTTTTTTTTTCCAAAGATAAGGAAAAATAATAGAAGTGTGAAGAAATATAAGCGGATTACGGTTTTTTAGAATTATTGACATGTTCAGAACAGGAGTGAATATAACTAGAAAATAGAAAAAAATTGGAAAAAATTCAAAAAATCCTAAAAATATGTATTTTTCGAAATTTCGATTTCTTCAAAATCCCCAATTTCCAGACTTTCTAGGATGTTTCAAAGCTTAAAATTCAATTTTTCAGCTTATTTTTATTTAAAAAAAGAGTTTAGAAGGTCCTTTTTGAAAGTTTTAGAAAGGGAAGAAGATGGGAGAGTGGGGGTCAATAGAAAAGGGKAAAAAAGGGTCCAAGGGGGAAAAATGACCAGTTTCCGGTGGGAAAAATGGGAAAAAGCAGTTCAAGACACTAGATTTTTAGATTTAAAATAGCTCAAAATTGGTCCAAAACTAACGAAAAACGATTTTTCATTCTAAAACCTCTATTTTCACCTTTTTACCCACACTTTCAGAGCTTTTAACCCCGATTTTCGAATTGCCCGCCCTCGAAAACCCCCAAAAAACATTTTTTTAAAAAAATTGCCACCGGTGGGATTCGAACCCGAGACCCCTAGATCCAAATTCCTTCGTCGAAAATCCCACTAGGCCATATGAGCAATTTTTTAAAAAATTGCTAGAAAATTGATGTTTGGGTCAAAAATTAGGTTTTAAAAGGGTTTTAGGCAATCTTTGGCTCCTTTGAGTGATTTTCCAGCTATTTTCGAGGATTTTCATTTTAAAATCCATAAGTTCACTTTTTAGAAAGGCTTAAAAGTTCAATTTTCTTTTCACAAAAAACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAGAAGGTCCTTTTTGAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GAGGTTTTAGAATGAAAAATCGT</pcr_primer_p2>
		<pcr_amplicon_size>213</pcr_amplicon_size>
		<canonical_amplicon>TTTAGAAGGTCCTTTTTGAAAGTTTTAGAAAGGGAAGAAGATGGGAGAGTGGGGGTCAATAGAAAAGGGAAAAAAAGGGTCCAAGGGGGAAAAATGACCAGTTTCCGGTGGGAAAAATGGGAAAAAGCAGTTCAAGACACTAGATTTTTAGATTTAAAATAGCTCAAAATTGGTCCAAAACTAACGAAAAACGATTTTTCATTCTAAAACCTC</canonical_amplicon>
		<polymorphic_amplicon>TTTAGAAGGTCCTTTTTGAAAGTTTTAGAAAGGGAAGAAGATGGGAGAGTGGGGGTCAATAGAAAAGGGKAAAAAAGGGTCCAAGGGGGAAAAATGACCAGTTTCCGGTGGGAAAAATGGGAAAAAGCAGTTCAAGACACTAGATTTTTAGATTTAAAATAGCTCAAAATTGGTCCAAAACTAACGAAAAACGATTTTTCATTCTAAAACCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24605</snp_id>
        <super_contig>c000801056.Contig1</super_contig>
        <contig_pos>237115</contig_pos>
        <strand>+</strand>
        <context>TTTGAGTTAT[A/T]TTCAACCTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCAAATTACACACTTATTTAATTAAGATTTATAGTCGTTTTGAGTTAT</left_flank>
        <right_flank>TTCAACCTGCTTCAAGCTCATTTGGCGATTTTCATGAACTTTTCTTCATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCCTCCTCTAGAGATTGCTTGGCTGCCATACGGAAATTCCGATTTCCTGGATTACTGTAAGACATATCAAAATGTGGTCAACTAACAAAATGTTTGTCTTAAAATGAGCAATATTTTATTAGTTGACAACTTTTTTATATCTTTAACAGGAAGATTGAGCTCAAAGTTCCAGAATTGAAATTGTTTGTCCCACAGGCGTATTGTCAAGTTTGACACCATTTATCCTGGCTACTGTAAGAGATATCAAAAAGTAGTCAACTAATAACATATTTGTCTTAAAATGAGCAATATTTTATCAGTTGATTACTTTTTGATATCTTTGACAGGAAATGAGATATATACGCTCAAAGTTGACGAGTTTCAAAAGAAGAGGCATTCTAGTACAGTAGTGTTAAAAGTGATGAAAACCTGCTAAAACAGGTCCAAAAGTTTTGTTTTGCCTAATTTTTCAAATTACACACTTATTTAATTAAGATTTATAGTCGTTTTGAGTTATATTCAACCTGCTTCAAGCTCATTTGGCGATTTTCATGAACTTTTCTTCATTTTGACCCTTTTGACTTGAATTTTAAGCTTTCTAACTTTGATTTTCGAATCTCCCGCCCTTGAAAACCCCCGAAAAATACTTTAAAAAAGAAGTTGTCACCGGTGGGATTCGAACCCGAGACCCCTAGATCCAAATTCTTTCGTCGAAAATAGGCCATATGAGCAATTTTTTAAAAAATTGCTAGAAAATTAATTTTTGGGTAAAAAATTGGGTTTAGAACGGTTTTTTGAGTTAGAAATTGTGTAAAATTGTGTGTTTTCTTCGAGATGAATAAACTCAAAAGAGGACTATTTTGGAAGTCTTCATTTTGACGCCAAAACTGAAAATCTCTGTTTTTCTATATTCAAAAAACCAAGTGACAATTCTAGGCTTTCAGACAGCTTCAAATACTTCACGAAAAGGAATTTTCAGTCACTAGGGAAAGAAAAATCAGAACGAAAAATAGTTTAG</canonical>
            <polymorphic>TTTTCCTCCTCTAGAGATTGCTTGGCTGCCATACGGAAATTCCGATTTCCTGGATTACTGTAAGACATATCAAAATGTGGTCAACTAACAAAATGTTTGTCTTAAAATGAGCAATATTTTATTAGTTGACAACTTTTTTATATCTTTAACAGGAAGATTGAGCTCAAAGTTCCAGAATTGAAATTGTTTGTCCCACAGGCGTATTGTCAAGTTTGACACCATTTATCCTGGCTACTGTAAGAGATATCAAAAAGTAGTCAACTAATAACATATTTGTCTTAAAATGAGCAATATTTTATCAGTTGATTACTTTTTGATATCTTTGACAGGAAATGAGATATATACGCTCAAAGTTGACGAGTTTCAAAAGAAGAGGCATTCTAGTACAGTAGTGTTAAAAGTGATGAAAACCTGCTAAAACAGGTCCAAAAGTTTTGTTTTGCCTAATTTTTCAAATTACACACTTATTTAATTAAGATTTATAGTCGTTTTGAGTTATWTTCAACCTGCTTCAAGCTCATTTGGCGATTTTCATGAACTTTTCTTCATTTTGACCCTTTTGACTTGAATTTTAAGCTTTCTAACTTTGATTTTCGAATCTCCCGCCCTTGAAAACCCCCGAAAAATACTTTAAAAAAGAAGTTGTCACCGGTGGGATTCGAACCCGAGACCCCTAGATCCAAATTCTTTCGTCGAAAATAGGCCATATGAGCAATTTTTTAAAAAATTGCTAGAAAATTAATTTTTGGGTAAAAAATTGGGTTTAGAACGGTTTTTTGAGTTAGAAATTGTGTAAAATTGTGTGTTTTCTTCGAGATGAATAAACTCAAAAGAGGACTATTTTGGAAGTCTTCATTTTGACGCCAAAACTGAAAATCTCTGTTTTTCTATATTCAAAAAACCAAGTGACAATTCTAGGCTTTCAGACAGCTTCAAATACTTCACGAAAAGGAATTTTCAGTCACTAGGGAAAGAAAAATCAGAACGAAAAATAGTTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTTTTGCCTAATTTTTCA</pcr_primer_p1>
		<pcr_primer_p2>AAACACACAATTTTACACAATTTC</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>TTTGTTTTGCCTAATTTTTCAAATTACACACTTATTTAATTAAGATTTATAGTCGTTTTGAGTTATATTCAACCTGCTTCAAGCTCATTTGGCGATTTTCATGAACTTTTCTTCATTTTGACCCTTTTGACTTGAATTTTAAGCTTTCTAACTTTGATTTTCGAATCTCCCGCCCTTGAAAACCCCCGAAAAATACTTTAAAAAAGAAGTTGTCACCGGTGGGATTCGAACCCGAGACCCCTAGATCCAAATTCTTTCGTCGAAAATAGGCCATATGAGCAATTTTTTAAAAAATTGCTAGAAAATTAATTTTTGGGTAAAAAATTGGGTTTAGAACGGTTTTTTGAGTTAGAAATTGTGTAAAATTGTGTGTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTGTTTTGCCTAATTTTTCAAATTACACACTTATTTAATTAAGATTTATAGTCGTTTTGAGTTATWTTCAACCTGCTTCAAGCTCATTTGGCGATTTTCATGAACTTTTCTTCATTTTGACCCTTTTGACTTGAATTTTAAGCTTTCTAACTTTGATTTTCGAATCTCCCGCCCTTGAAAACCCCCGAAAAATACTTTAAAAAAGAAGTTGTCACCGGTGGGATTCGAACCCGAGACCCCTAGATCCAAATTCTTTCGTCGAAAATAGGCCATATGAGCAATTTTTTAAAAAATTGCTAGAAAATTAATTTTTGGGTAAAAAATTGGGTTTAGAACGGTTTTTTGAGTTAGAAATTGTGTAAAATTGTGTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24606</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>21953</contig_pos>
        <strand>+</strand>
        <context>TTCTGGGAGG[A/G]AWTTTTTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTTGATTGGATTTTTCGATTAGGCTCCAGGAAAAAAATTCTGGGAGG</left_flank>
        <right_flank>AATTTTTTTTCTGTTTCCCATGATTCACTTTTATCGTCTTCCACCCACAC</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAATTCGATTAAAATGGAATTTCCAAAAATGTTTGATTTTGTCGAAAAAGGTTGAAAAACTTTGAAGTTCTGAACTAAAATCGTTTTCCGGAAAATTCGAAAAGTAAGAAAATTTCATTTTCTCTTATTGCGGTCTCAAAACGATGAATTCTAACTGGATTACTGTACTTTTCAAAACTATTACCATTCCGTTTGATTTCACAATACTCCTTGAACCAATAATGTACGCGATTCCTCAATAGAGCGCGATTGCCAAAAAAAAAAAACAAAAAAAACTCACTATCACTCAACGGCTGCGGGTAGTACTGTGCCGGTGGAGCATTTTGTGCTCCATACTGTGCATTCGCACAATAGAAAGCACAAATGCTCAGCAAGACGAGGATAGAGGAATTCATGGAGAATGATAAGGAAATTCTGAGATCTTGGAGGGGTTTTTATAGTGGAAGGATTTTTGATTGGATTTTTCGATTAGGCTCCAGGAAAAAAATTCTGGGAGGGAATTTTTTTTCTGTTTCCCATGATTCACTTTTATCGTCTTCCACCCACACAGATGCAGTTGGTTCAATTTGGCTGTCTGAAATTCCAACGGAAACTTGAAATATGAAACTGGAATCTTGACTGCGTAGCTTGACTTTTAGATTACTGTAGACCGAAAACTGACTGAATAATCTTCAAGGTTACTGTAGAGAAAAGTTCCGTTGCCTTTATTGGGTTACTGTATGTTACTGTAGACCCAAACTGAACGAAAAATACAGTAATATAGTGAATATCCATCCTTATTTTCAAAAAGTTTAAAATTTCAATTTTTGGAAGTTTCTAGAAATTTTATTGGTCTCGAAACGGAATAAATGCTTTTTTGGTTGCAATGAGTTGTGATATAAACAATTTTTTTTGAAAATTCAAAAAAAACTTTTAATACAACATTTTTTGAATTTTTTAAATTGTTATTGTGGAGAAGATTTCTGGAATTCCTGAACATTTTTTCTAGGAAAAATATT</canonical>
            <polymorphic>CTGAATTCGATTAAAATGGAATTTCCAAAAATGTTTGATTTTGTCGAAAAAGGTTGAAAAACTTTGAAGTTCTGAACTAAAATCGTTTTCCGGAAAATTCGAAAAGTAAGAAAATTTCATTTTCTCTTATTGCGGTCTCAAAACGATGAATTCTAACTGGATTACTGTACTTTTCAAAACTATTACCATTCCGTTTGATTTCACAATACTCCTTGAACCAATAATGTACGCGATTCCTCAATAGAGCGCGATTGCCAAAAAAAAAAAACAAAAAAAACTCACTATCACTCAACGGCTGCGGGTAGTACTGTGCCGGTGGAGCATTTTGTGCTCCATACTGTGCATTCGCACAATAGAAAGCACAAATGCTCAGCAAGACGAGGATAGAGGAATTCATGGAGAATGATAAGGAAATTCTGAGATCTTGGAGGGGTTTTTATAGTGGAAGGATTTTTGATTGGATTTTTCGATTAGGCTCCAGGAAAAAAATTCTGGGAGGRAATTTTTTTTCTGTTTCCCATGATTCACTTTTATCGTCTTCCACCCACACAGATGCAGTTGGTTCAATTTGGCTGTCTGAAATTCCAACGGAAACTTGAAATATGAAACTGGAATCTTGACTGCGTAGCTTGACTTTTAGATTACTGTAGACCGAAAACTGACTGAATAATCTTCAAGGTTACTGTAGAGAAAAGTTCCGTTGCCTTTATTGGGTTACTGTATGTTACTGTAGACCCAAACTGAACGAAAAATACAGTAATATAGTGAATATCCATCCTTATTTTCAAAAAGTTTAAAATTTCAATTTTTGGAAGTTTCTAGAAATTTTATTGGTCTCGAAACGGAATAAATGCTTTTTTGGTTGCAATGAGTTGTGATATAAACAATTTTTTTTGAAAATTCAAAAAAAACTTTTAATACAACATTTTTTGAATTTTTTAAATTGTTATTGTGGAGAAGATTTCTGGAATTCCTGAACATTTTTTCTAGGAAAAATATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>242 217 80 76 75 75 36 36 34 32 26 22 17 16 13 3</canonical_bands>
                <polymorphic_bands>242 217 93 76 75 75 36 36 34 32 26 22 17 16 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTTTATAGTGGAAGGATTTT</pcr_primer_p1>
		<pcr_primer_p2>AACCTTGAAGATTATTCAGTCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTTTTTATAGTGGAAGGATTTTTGATTGGATTTTTCGATTAGGCTCCAGGAAAAAAATTCTGGGAGGGAATTTTTTTTCTGTTTCCCATGATTCACTTTTATCGTCTTCCACCCACACAGATGCAGTTGGTTCAATTTGGCTGTCTGAAATTCCAACGGAAACTTGAAATATGAAACTGGAATCTTGACTGCGTAGCTTGACTTTTAGATTACTGTAGACCGAAAACTGACTGAATAATCTTCAAGGTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTTTTATAGTGGAAGGATTTTTGATTGGATTTTTCGATTAGGCTCCAGGAAAAAAATTCTGGGAGGRAATTTTTTTTCTGTTTCCCATGATTCACTTTTATCGTCTTCCACCCACACAGATGCAGTTGGTTCAATTTGGCTGTCTGAAATTCCAACGGAAACTTGAAATATGAAACTGGAATCTTGACTGCGTAGCTTGACTTTTAGATTACTGTAGACCGAAAACTGACTGAATAATCTTCAAGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24607</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>24610</contig_pos>
        <strand></strand>
        <context>tctctctctc[C/T]ctctctcyct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGACCTCTTACACCTGACATGTCTGACATTTGAATCCTCTCTCTCTCTC</left_flank>
        <right_flank>CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAGAAGAAGCAA</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGTCTATAAGTTCAATTTAGCATTGCAGCGGAGCAACTGCCAGTTCACTGTTTTTCACAAGAAAAGAAGTTGTGAAAAAATTTTACTGCTTCATCAAATTATTATAGGCCAATACTTAACCTAGCTAATCTCATTGGGCAACAGTTTGCATGTGGCTTATCTCGTTCGGGTTACTGTAGCAGTAAAATTTTCATTTTCATAAGATGATATTGGTTTTTTACTGCTACAGTAACCTGAATTAAAGTTTCAGGTACCATGTGTAATGTTAGTGTAATAAAAATTGGGACATATTTCGGTTTACTGTAGCAGTAAATAAGGTTCTATGAAAAACATTTTTACTGCTTCAGTAACCTGTAATAAGTTTCTAGTAGTACCTCTTGCCATTCAAACGGGAGAATTTTTTGAACATATATTTTTTTCTCGAAAATCCAGTGCTCTTTTGGTTCTTTGACCTCTTACACCTGACATGTCTGACATTTGAATCCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAGAAGAAGCAAGAGGGTCTTGGAAAGGTGATACATTTGAAATTCTCAGTTGGGCAAAGTTTTTGTTTGCAAAAAAAAAAAATCTTTTTGAATTTCCGTTTCAAAAGTTCCATGATTTCAAGAACAAAAATTATTTCCCAGTTCTAGCTTCATTTTTCAATCCGACACTTGCAACCGCATCGAGCTCAGGAGATTCAGAAACTTCGAGAAGCCTTTATTTTGCACTTTTGAAACGAATTCCATTTTATTCGTCACTTTTAATCTCATCCCCTCCGTTTTATTCTTCAAAGGGATTCGCACCGACAATAACAGAAAAAGAAAGAGTTTCTTTTTTAATTTAAAACTTTTTTTTCTTAAGCGTTAGGAGTTTTTTTGCAGGATCTTTCTCTCTTTAAATCTGAGAATTTTTCTCGGAAGTTTTGAAATTCAGGGTAGATCTTTTCTAATACTGTTTCAATCACT</canonical>
            <polymorphic>AAGGTCTATAAGTTCAATTTAGCATTGCAGCGGAGCAACTGCCAGTTCACTGTTTTTCACAAGAAAAGAAGTTGTGAAAAAATTTTACTGCTTCATCAAATTATTATAGGCCAATACTTAACCTAGCTAATCTCATTGGGCAACAGTTTGCATGTGGCTTATCTCGTTCGGGTTACTGTAGCAGTAAAATTTTCATTTTCATAAGATGATATTGGTTTTTTACTGCTACAGTAACCTGAATTAAAGTTTCAGGTACCATGTGTAATGTTAGTGTAATAAAAATTGGGACATATTTCGGTTTACTGTAGCAGTAAATAAGGTTCTATGAAAAACATTTTTACTGCTTCAGTAACCTGTAATAAGTTTCTAGTAGTACCTCTTGCCATTCAAACGGGAGAATTTTTTGAACATATATTTTTTTCTCGAAAATCCAGTGCTCTTTTGGTTCTTTGACCTCTTACACCTGACATGTCTGACATTTGAATCCTCTCTCTCTCTCYCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAGAAGAAGCAAGAGGGTCTTGGAAAGGTGATACATTTGAAATTCTCAGTTGGGCAAAGTTTTTGTTTGCAAAAAAAAAAAATCTTTTTGAATTTCCGTTTCAAAAGTTCCATGATTTCAAGAACAAAAATTATTTCCCAGTTCTAGCTTCATTTTTCAATCCGACACTTGCAACCGCATCGAGCTCAGGAGATTCAGAAACTTCGAGAAGCCTTTATTTTGCACTTTTGAAACGAATTCCATTTTATTCGTCACTTTTAATCTCATCCCCTCCGTTTTATTCTTCAAAGGGATTCGCACCGACAATAACAGAAAAAGAAAGAGTTTCTTTTTTAATTTAAAACTTTTTTTTCTTAAGCGTTAGGAGTTTTTTTGCAGGATCTTTCTCTCTTTAAATCTGAGAATTTTTCTCGGAAGTTTTGAAATTCAGGGTAGATCTTTTCTAATACTGTTTCAATCACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTGGTTCTTTGACCTCTTA</pcr_primer_p1>
		<pcr_primer_p2>AGAACTGGGAAATAATTTTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTTTTGGTTCTTTGACCTCTTACACCTGACATGTCTGACATTTGAATCCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAGAAGAAGCAAGAGGGTCTTGGAAAGGTGATACATTTGAAATTCTCAGTTGGGCAAAGTTTTTGTTTGCAAAAAAAAAAAATCTTTTTGAATTTCCGTTTCAAAAGTTCCATGATTTCAAGAACAAAAATTATTTCCCAGTTCT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTGGTTCTTTGACCTCTTACACCTGACATGTCTGACATTTGAATCCTCTCTCTCTCTCYCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAGAAGAAGCAAGAGGGTCTTGGAAAGGTGATACATTTGAAATTCTCAGTTGGGCAAAGTTTTTGTTTGCAAAAAAAAAAAATCTTTTTGAATTTCCGTTTCAAAAGTTCCATGATTTCAAGAACAAAAATTATTTCCCAGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24608</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>24618</contig_pos>
        <strand></strand>
        <context>tcyctctctc[T/C]ctctctctct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTACACCTGACATGTCTGACATTTGAATCCTCTCTCTCTCTCCCTCTCTC</left_flank>
        <right_flank>CTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAGAAGAAGCAAGAGGGTCT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGTTCAATTTAGCATTGCAGCGGAGCAACTGCCAGTTCACTGTTTTTCACAAGAAAAGAAGTTGTGAAAAAATTTTACTGCTTCATCAAATTATTATAGGCCAATACTTAACCTAGCTAATCTCATTGGGCAACAGTTTGCATGTGGCTTATCTCGTTCGGGTTACTGTAGCAGTAAAATTTTCATTTTCATAAGATGATATTGGTTTTTTACTGCTACAGTAACCTGAATTAAAGTTTCAGGTACCATGTGTAATGTTAGTGTAATAAAAATTGGGACATATTTCGGTTTACTGTAGCAGTAAATAAGGTTCTATGAAAAACATTTTTACTGCTTCAGTAACCTGTAATAAGTTTCTAGTAGTACCTCTTGCCATTCAAACGGGAGAATTTTTTGAACATATATTTTTTTCTCGAAAATCCAGTGCTCTTTTGGTTCTTTGACCTCTTACACCTGACATGTCTGACATTTGAATCCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAGAAGAAGCAAGAGGGTCTTGGAAAGGTGATACATTTGAAATTCTCAGTTGGGCAAAGTTTTTGTTTGCAAAAAAAAAAAATCTTTTTGAATTTCCGTTTCAAAAGTTCCATGATTTCAAGAACAAAAATTATTTCCCAGTTCTAGCTTCATTTTTCAATCCGACACTTGCAACCGCATCGAGCTCAGGAGATTCAGAAACTTCGAGAAGCCTTTATTTTGCACTTTTGAAACGAATTCCATTTTATTCGTCACTTTTAATCTCATCCCCTCCGTTTTATTCTTCAAAGGGATTCGCACCGACAATAACAGAAAAAGAAAGAGTTTCTTTTTTAATTTAAAACTTTTTTTTCTTAAGCGTTAGGAGTTTTTTTGCAGGATCTTTCTCTCTTTAAATCTGAGAATTTTTCTCGGAAGTTTTGAAATTCAGGGTAGATCTTTTCTAATACTGTTTCAATCACTTTAGATTA</canonical>
            <polymorphic>TAAGTTCAATTTAGCATTGCAGCGGAGCAACTGCCAGTTCACTGTTTTTCACAAGAAAAGAAGTTGTGAAAAAATTTTACTGCTTCATCAAATTATTATAGGCCAATACTTAACCTAGCTAATCTCATTGGGCAACAGTTTGCATGTGGCTTATCTCGTTCGGGTTACTGTAGCAGTAAAATTTTCATTTTCATAAGATGATATTGGTTTTTTACTGCTACAGTAACCTGAATTAAAGTTTCAGGTACCATGTGTAATGTTAGTGTAATAAAAATTGGGACATATTTCGGTTTACTGTAGCAGTAAATAAGGTTCTATGAAAAACATTTTTACTGCTTCAGTAACCTGTAATAAGTTTCTAGTAGTACCTCTTGCCATTCAAACGGGAGAATTTTTTGAACATATATTTTTTTCTCGAAAATCCAGTGCTCTTTTGGTTCTTTGACCTCTTACACCTGACATGTCTGACATTTGAATCCTCTCTCTCTCTCCCTCTCTCYCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAGAAGAAGCAAGAGGGTCTTGGAAAGGTGATACATTTGAAATTCTCAGTTGGGCAAAGTTTTTGTTTGCAAAAAAAAAAAATCTTTTTGAATTTCCGTTTCAAAAGTTCCATGATTTCAAGAACAAAAATTATTTCCCAGTTCTAGCTTCATTTTTCAATCCGACACTTGCAACCGCATCGAGCTCAGGAGATTCAGAAACTTCGAGAAGCCTTTATTTTGCACTTTTGAAACGAATTCCATTTTATTCGTCACTTTTAATCTCATCCCCTCCGTTTTATTCTTCAAAGGGATTCGCACCGACAATAACAGAAAAAGAAAGAGTTTCTTTTTTAATTTAAAACTTTTTTTTCTTAAGCGTTAGGAGTTTTTTTGCAGGATCTTTCTCTCTTTAAATCTGAGAATTTTTCTCGGAAGTTTTGAAATTCAGGGTAGATCTTTTCTAATACTGTTTCAATCACTTTAGATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTGGTTCTTTGACCTCTTA</pcr_primer_p1>
		<pcr_primer_p2>AGAACTGGGAAATAATTTTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTTTTGGTTCTTTGACCTCTTACACCTGACATGTCTGACATTTGAATCCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAGAAGAAGCAAGAGGGTCTTGGAAAGGTGATACATTTGAAATTCTCAGTTGGGCAAAGTTTTTGTTTGCAAAAAAAAAAAATCTTTTTGAATTTCCGTTTCAAAAGTTCCATGATTTCAAGAACAAAAATTATTTCCCAGTTCT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTGGTTCTTTGACCTCTTACACCTGACATGTCTGACATTTGAATCCTCTCTCTCTCTCCCTCTCTCYCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAGAAGAAGCAAGAGGGTCTTGGAAAGGTGATACATTTGAAATTCTCAGTTGGGCAAAGTTTTTGTTTGCAAAAAAAAAAAATCTTTTTGAATTTCCGTTTCAAAAGTTCCATGATTTCAAGAACAAAAATTATTTCCCAGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24609</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>24666</contig_pos>
        <strand>+</strand>
        <context>AGCAAGAGGG[C/T]CTTGGAAAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAGAAGAAGCAAGAGGG</left_flank>
        <right_flank>CTTGGAAAGGTGATACATTTGAAATTCTCAGTTGGGCAAAGTTTTTGTTT</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACAAGAAAAGAAGTTGTGAAAAAATTTTACTGCTTCATCAAATTATTATAGGCCAATACTTAACCTAGCTAATCTCATTGGGCAACAGTTTGCATGTGGCTTATCTCGTTCGGGTTACTGTAGCAGTAAAATTTTCATTTTCATAAGATGATATTGGTTTTTTACTGCTACAGTAACCTGAATTAAAGTTTCAGGTACCATGTGTAATGTTAGTGTAATAAAAATTGGGACATATTTCGGTTTACTGTAGCAGTAAATAAGGTTCTATGAAAAACATTTTTACTGCTTCAGTAACCTGTAATAAGTTTCTAGTAGTACCTCTTGCCATTCAAACGGGAGAATTTTTTGAACATATATTTTTTTCTCGAAAATCCAGTGCTCTTTTGGTTCTTTGACCTCTTACACCTGACATGTCTGACATTTGAATCCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAGAAGAAGCAAGAGGGTCTTGGAAAGGTGATACATTTGAAATTCTCAGTTGGGCAAAGTTTTTGTTTGCAAAAAAAAAAAATCTTTTTGAATTTCCGTTTCAAAAGTTCCATGATTTCAAGAACAAAAATTATTTCCCAGTTCTAGCTTCATTTTTCAATCCGACACTTGCAACCGCATCGAGCTCAGGAGATTCAGAAACTTCGAGAAGCCTTTATTTTGCACTTTTGAAACGAATTCCATTTTATTCGTCACTTTTAATCTCATCCCCTCCGTTTTATTCTTCAAAGGGATTCGCACCGACAATAACAGAAAAAGAAAGAGTTTCTTTTTTAATTTAAAACTTTTTTTTCTTAAGCGTTAGGAGTTTTTTTGCAGGATCTTTCTCTCTTTAAATCTGAGAATTTTTCTCGGAAGTTTTGAAATTCAGGGTAGATCTTTTCTAATACTGTTTCAATCACTTTAGATTAGTTGAAAACTTTTTTGCGCTAATCATTAGAATAAATCTTTTTTTTGGT</canonical>
            <polymorphic>TCACAAGAAAAGAAGTTGTGAAAAAATTTTACTGCTTCATCAAATTATTATAGGCCAATACTTAACCTAGCTAATCTCATTGGGCAACAGTTTGCATGTGGCTTATCTCGTTCGGGTTACTGTAGCAGTAAAATTTTCATTTTCATAAGATGATATTGGTTTTTTACTGCTACAGTAACCTGAATTAAAGTTTCAGGTACCATGTGTAATGTTAGTGTAATAAAAATTGGGACATATTTCGGTTTACTGTAGCAGTAAATAAGGTTCTATGAAAAACATTTTTACTGCTTCAGTAACCTGTAATAAGTTTCTAGTAGTACCTCTTGCCATTCAAACGGGAGAATTTTTTGAACATATATTTTTTTCTCGAAAATCCAGTGCTCTTTTGGTTCTTTGACCTCTTACACCTGACATGTCTGACATTTGAATCCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAGAAGAAGCAAGAGGGYCTTGGAAAGGTGATACATTTGAAATTCTCAGTTGGGCAAAGTTTTTGTTTGCAAAAAAAAAAAATCTTTTTGAATTTCCGTTTCAAAAGTTCCATGATTTCAAGAACAAAAATTATTTCCCAGTTCTAGCTTCATTTTTCAATCCGACACTTGCAACCGCATCGAGCTCAGGAGATTCAGAAACTTCGAGAAGCCTTTATTTTGCACTTTTGAAACGAATTCCATTTTATTCGTCACTTTTAATCTCATCCCCTCCGTTTTATTCTTCAAAGGGATTCGCACCGACAATAACAGAAAAAGAAAGAGTTTCTTTTTTAATTTAAAACTTTTTTTTCTTAAGCGTTAGGAGTTTTTTTGCAGGATCTTTCTCTCTTTAAATCTGAGAATTTTTCTCGGAAGTTTTGAAATTCAGGGTAGATCTTTTCTAATACTGTTTCAATCACTTTAGATTAGTTGAAAACTTTTTTGCGCTAATCATTAGAATAAATCTTTTTTTTGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTGGTTCTTTGACCTCTTA</pcr_primer_p1>
		<pcr_primer_p2>AGAACTGGGAAATAATTTTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTTTTGGTTCTTTGACCTCTTACACCTGACATGTCTGACATTTGAATCCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAGAAGAAGCAAGAGGGTCTTGGAAAGGTGATACATTTGAAATTCTCAGTTGGGCAAAGTTTTTGTTTGCAAAAAAAAAAAATCTTTTTGAATTTCCGTTTCAAAAGTTCCATGATTTCAAGAACAAAAATTATTTCCCAGTTCT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTGGTTCTTTGACCTCTTACACCTGACATGTCTGACATTTGAATCCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAGAAGAAGCAAGAGGGYCTTGGAAAGGTGATACATTTGAAATTCTCAGTTGGGCAAAGTTTTTGTTTGCAAAAAAAAAAAATCTTTTTGAATTTCCGTTTCAAAAGTTCCATGATTTCAAGAACAAAAATTATTTCCCAGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24610</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>24719</contig_pos>
        <strand>+</strand>
        <context>TTTTGTTTGC[A/G]AAAAAAWAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGAAAGGTGATACATTTGAAATTCTCAGTTGGGCAAAGTTTTTGTTTGC</left_flank>
        <right_flank>AAAAAAAAAAATCTTTTTGAATTTCCGTTTCAAAAGTTCCATGATTTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCAATACTTAACCTAGCTAATCTCATTGGGCAACAGTTTGCATGTGGCTTATCTCGTTCGGGTTACTGTAGCAGTAAAATTTTCATTTTCATAAGATGATATTGGTTTTTTACTGCTACAGTAACCTGAATTAAAGTTTCAGGTACCATGTGTAATGTTAGTGTAATAAAAATTGGGACATATTTCGGTTTACTGTAGCAGTAAATAAGGTTCTATGAAAAACATTTTTACTGCTTCAGTAACCTGTAATAAGTTTCTAGTAGTACCTCTTGCCATTCAAACGGGAGAATTTTTTGAACATATATTTTTTTCTCGAAAATCCAGTGCTCTTTTGGTTCTTTGACCTCTTACACCTGACATGTCTGACATTTGAATCCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAGAAGAAGCAAGAGGGTCTTGGAAAGGTGATACATTTGAAATTCTCAGTTGGGCAAAGTTTTTGTTTGCAAAAAAAAAAAATCTTTTTGAATTTCCGTTTCAAAAGTTCCATGATTTCAAGAACAAAAATTATTTCCCAGTTCTAGCTTCATTTTTCAATCCGACACTTGCAACCGCATCGAGCTCAGGAGATTCAGAAACTTCGAGAAGCCTTTATTTTGCACTTTTGAAACGAATTCCATTTTATTCGTCACTTTTAATCTCATCCCCTCCGTTTTATTCTTCAAAGGGATTCGCACCGACAATAACAGAAAAAGAAAGAGTTTCTTTTTTAATTTAAAACTTTTTTTTCTTAAGCGTTAGGAGTTTTTTTGCAGGATCTTTCTCTCTTTAAATCTGAGAATTTTTCTCGGAAGTTTTGAAATTCAGGGTAGATCTTTTCTAATACTGTTTCAATCACTTTAGATTAGTTGAAAACTTTTTTGCGCTAATCATTAGAATAAATCTTTTTTTTGGTTTTAAGATAAATAGAATCACATTTCTGGTTATATATGTTACCTAATTGATGTT</canonical>
            <polymorphic>GCCAATACTTAACCTAGCTAATCTCATTGGGCAACAGTTTGCATGTGGCTTATCTCGTTCGGGTTACTGTAGCAGTAAAATTTTCATTTTCATAAGATGATATTGGTTTTTTACTGCTACAGTAACCTGAATTAAAGTTTCAGGTACCATGTGTAATGTTAGTGTAATAAAAATTGGGACATATTTCGGTTTACTGTAGCAGTAAATAAGGTTCTATGAAAAACATTTTTACTGCTTCAGTAACCTGTAATAAGTTTCTAGTAGTACCTCTTGCCATTCAAACGGGAGAATTTTTTGAACATATATTTTTTTCTCGAAAATCCAGTGCTCTTTTGGTTCTTTGACCTCTTACACCTGACATGTCTGACATTTGAATCCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAGAAGAAGCAAGAGGGTCTTGGAAAGGTGATACATTTGAAATTCTCAGTTGGGCAAAGTTTTTGTTTGCRAAAAAAAAAAATCTTTTTGAATTTCCGTTTCAAAAGTTCCATGATTTCAAGAACAAAAATTATTTCCCAGTTCTAGCTTCATTTTTCAATCCGACACTTGCAACCGCATCGAGCTCAGGAGATTCAGAAACTTCGAGAAGCCTTTATTTTGCACTTTTGAAACGAATTCCATTTTATTCGTCACTTTTAATCTCATCCCCTCCGTTTTATTCTTCAAAGGGATTCGCACCGACAATAACAGAAAAAGAAAGAGTTTCTTTTTTAATTTAAAACTTTTTTTTCTTAAGCGTTAGGAGTTTTTTTGCAGGATCTTTCTCTCTTTAAATCTGAGAATTTTTCTCGGAAGTTTTGAAATTCAGGGTAGATCTTTTCTAATACTGTTTCAATCACTTTAGATTAGTTGAAAACTTTTTTGCGCTAATCATTAGAATAAATCTTTTTTTTGGTTTTAAGATAAATAGAATCACATTTCTGGTTATATATGTTACCTAATTGATGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>457 196 153 102 51 41</canonical_bands>
                <polymorphic_bands>559 196 153 51 41</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTTGGTTCTTTGACCTCTTA</pcr_primer_p1>
		<pcr_primer_p2>AGAACTGGGAAATAATTTTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTTTTGGTTCTTTGACCTCTTACACCTGACATGTCTGACATTTGAATCCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAGAAGAAGCAAGAGGGTCTTGGAAAGGTGATACATTTGAAATTCTCAGTTGGGCAAAGTTTTTGTTTGCAAAAAAAAAAAATCTTTTTGAATTTCCGTTTCAAAAGTTCCATGATTTCAAGAACAAAAATTATTTCCCAGTTCT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTGGTTCTTTGACCTCTTACACCTGACATGTCTGACATTTGAATCCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAGAAGAAGCAAGAGGGTCTTGGAAAGGTGATACATTTGAAATTCTCAGTTGGGCAAAGTTTTTGTTTGCRAAAAAAAAAAATCTTTTTGAATTTCCGTTTCAAAAGTTCCATGATTTCAAGAACAAAAATTATTTCCCAGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24611</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>24726</contig_pos>
        <strand>+</strand>
        <context>TGCRAAAAAA[A/T]AAAATCTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGATACATTTGAAATTCTCAGTTGGGCAAAGTTTTTGTTTGCAAAAAAA</left_flank>
        <right_flank>AAAATCTTTTTGAATTTCCGTTTCAAAAGTTCCATGATTTCAAGAACAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTAACCTAGCTAATCTCATTGGGCAACAGTTTGCATGTGGCTTATCTCGTTCGGGTTACTGTAGCAGTAAAATTTTCATTTTCATAAGATGATATTGGTTTTTTACTGCTACAGTAACCTGAATTAAAGTTTCAGGTACCATGTGTAATGTTAGTGTAATAAAAATTGGGACATATTTCGGTTTACTGTAGCAGTAAATAAGGTTCTATGAAAAACATTTTTACTGCTTCAGTAACCTGTAATAAGTTTCTAGTAGTACCTCTTGCCATTCAAACGGGAGAATTTTTTGAACATATATTTTTTTCTCGAAAATCCAGTGCTCTTTTGGTTCTTTGACCTCTTACACCTGACATGTCTGACATTTGAATCCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAGAAGAAGCAAGAGGGTCTTGGAAAGGTGATACATTTGAAATTCTCAGTTGGGCAAAGTTTTTGTTTGCAAAAAAAAAAAATCTTTTTGAATTTCCGTTTCAAAAGTTCCATGATTTCAAGAACAAAAATTATTTCCCAGTTCTAGCTTCATTTTTCAATCCGACACTTGCAACCGCATCGAGCTCAGGAGATTCAGAAACTTCGAGAAGCCTTTATTTTGCACTTTTGAAACGAATTCCATTTTATTCGTCACTTTTAATCTCATCCCCTCCGTTTTATTCTTCAAAGGGATTCGCACCGACAATAACAGAAAAAGAAAGAGTTTCTTTTTTAATTTAAAACTTTTTTTTCTTAAGCGTTAGGAGTTTTTTTGCAGGATCTTTCTCTCTTTAAATCTGAGAATTTTTCTCGGAAGTTTTGAAATTCAGGGTAGATCTTTTCTAATACTGTTTCAATCACTTTAGATTAGTTGAAAACTTTTTTGCGCTAATCATTAGAATAAATCTTTTTTTTGGTTTTAAGATAAATAGAATCACATTTCTGGTTATATATGTTACCTAATTGATGTTGACTTAA</canonical>
            <polymorphic>CTTAACCTAGCTAATCTCATTGGGCAACAGTTTGCATGTGGCTTATCTCGTTCGGGTTACTGTAGCAGTAAAATTTTCATTTTCATAAGATGATATTGGTTTTTTACTGCTACAGTAACCTGAATTAAAGTTTCAGGTACCATGTGTAATGTTAGTGTAATAAAAATTGGGACATATTTCGGTTTACTGTAGCAGTAAATAAGGTTCTATGAAAAACATTTTTACTGCTTCAGTAACCTGTAATAAGTTTCTAGTAGTACCTCTTGCCATTCAAACGGGAGAATTTTTTGAACATATATTTTTTTCTCGAAAATCCAGTGCTCTTTTGGTTCTTTGACCTCTTACACCTGACATGTCTGACATTTGAATCCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAGAAGAAGCAAGAGGGTCTTGGAAAGGTGATACATTTGAAATTCTCAGTTGGGCAAAGTTTTTGTTTGCAAAAAAAWAAAATCTTTTTGAATTTCCGTTTCAAAAGTTCCATGATTTCAAGAACAAAAATTATTTCCCAGTTCTAGCTTCATTTTTCAATCCGACACTTGCAACCGCATCGAGCTCAGGAGATTCAGAAACTTCGAGAAGCCTTTATTTTGCACTTTTGAAACGAATTCCATTTTATTCGTCACTTTTAATCTCATCCCCTCCGTTTTATTCTTCAAAGGGATTCGCACCGACAATAACAGAAAAAGAAAGAGTTTCTTTTTTAATTTAAAACTTTTTTTTCTTAAGCGTTAGGAGTTTTTTTGCAGGATCTTTCTCTCTTTAAATCTGAGAATTTTTCTCGGAAGTTTTGAAATTCAGGGTAGATCTTTTCTAATACTGTTTCAATCACTTTAGATTAGTTGAAAACTTTTTTGCGCTAATCATTAGAATAAATCTTTTTTTTGGTTTTAAGATAAATAGAATCACATTTCTGGTTATATATGTTACCTAATTGATGTTGACTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTGGTTCTTTGACCTCTTA</pcr_primer_p1>
		<pcr_primer_p2>AGAACTGGGAAATAATTTTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTTTTGGTTCTTTGACCTCTTACACCTGACATGTCTGACATTTGAATCCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAGAAGAAGCAAGAGGGTCTTGGAAAGGTGATACATTTGAAATTCTCAGTTGGGCAAAGTTTTTGTTTGCAAAAAAAAAAAATCTTTTTGAATTTCCGTTTCAAAAGTTCCATGATTTCAAGAACAAAAATTATTTCCCAGTTCT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTGGTTCTTTGACCTCTTACACCTGACATGTCTGACATTTGAATCCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCAGAAGAAGCAAGAGGGTCTTGGAAAGGTGATACATTTGAAATTCTCAGTTGGGCAAAGTTTTTGTTTGCAAAAAAAWAAAATCTTTTTGAATTTCCGTTTCAAAAGTTCCATGATTTCAAGAACAAAAATTATTTCCCAGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24612</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>43662</contig_pos>
        <strand>+</strand>
        <context>ACTCACTAGT[A/T]AGTTATTCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCAGATTACACAGTTCGGGTAAAGCTCAACTATGAAAAAACTCACTAGT</left_flank>
        <right_flank>AGTTATTCATTGAAATTAGGAAGCGGTGAAAGTCTATCGGATCACTTATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCAAAGTTGAAGGACCTTTTTGTTACAGGTTTTAAGGTACCATGAATAATCAACAACTAACACCAATTTCAAAAAATTTTAACCATTAACACCTTTTCAAAACCGTAAGAAATTTATTTCCTTTTCGGAATTGTATACTGTAGTTGACCATACGTATTGACCATTCGGATTTTTTTCCTCTACCTTTTGAGAGGGTCAGTCTTCACAATTTTGTGATGCTTATTTCCTGATCAGTTTTCTGCCCAATCACCTATAAGAAAAATTTGTAAAAATAAAATTATTAGAAATAATGAAACTGTGAAAATTCTTATTTATCAGTCTGAGGCTTGTCAGATCACTTATCAGAAATTTAGCCTTGAAATTACTAAAACAGTGAGACTGTAACTTTTTAAAATTTTCCATTTTCTGAAAATTCCAGTTTCACCTAACGCATAACTTTTGGAACCTTTCCAGATTACACAGTTCGGGTAAAGCTCAACTATGAAAAAACTCACTAGTCAGTTATTCATTGAAATTAGGAAGCGGTGAAAGTCTATCGGATCACTTATCGGAACTCTCGTCTTGAAATTATAAAAATAGTGAAACTGTATTTTTGTTTTATCGAAAATTCTCTTTTCTAAAAATTCCAGTTTCACCTAATGCATAAGTTTTGAAACTTATCATGTTACATAGTGCAGTATCATTCCGGCGTTTTTCAATTTTCCTGTATTGCGAAATTCGTCATTTCTCTCTAAAAATGACTCACCCAGTTATTCTATGAATTTTTATTCAAAAAAGAGAAAAAAAAGTGGAAAAATGATCGGGTTAGAAAACTGGTTCTTTTTCAGTTATGTTTTATATGATGACTGACAAGGTGATGGGGGAAAAAGTGAACATGAGTTTTTGGGAAAAAATCTGTTTCAAGGATTCTGTAACTTTCTTTTTTTTTGACTAATCGATTTTGCATATATTCAAAAAACGTTTTCCTTAAAGGTGGTGTACGGTGAAATTTTTTATTGC</canonical>
            <polymorphic>GTCAAAGTTGAAGGACCTTTTTGTTACAGGTTTTAAGGTACCATGAATAATCAACAACTAACACCAATTTCAAAAAATTTTAACCATTAACACCTTTTCAAAACCGTAAGAAATTTATTTCCTTTTCGGAATTGTATACTGTAGTTGACCATACGTATTGACCATTCGGATTTTTTTCCTCTACCTTTTGAGAGGGTCAGTCTTCACAATTTTGTGATGCTTATTTCCTGATCAGTTTTCTGCCCAATCACCTATAAGAAAAATTTGTAAAAATAAAATTATTAGAAATAATGAAACTGTGAAAATTCTTATTTATCAGTCTGAGGCTTGTCAGATCACTTATCAGAAATTTAGCCTTGAAATTACTAAAACAGTGAGACTGTAACTTTTTAAAATTTTCCATTTTCTGAAAATTCCAGTTTCACCTAACGCATAACTTTTGGAACCTTTCCAGATTACACAGTTCGGGTAAAGCTCAACTATGAAAAAACTCACTAGTWAGTTATTCATTGAAATTAGGAAGCGGTGAAAGTCTATCGGATCACTTATCGGAACTCTCGTCTTGAAATTATAAAAATAGTGAAACTGTATTTTTGTTTTATCGAAAATTCTCTTTTCTAAAAATTCCAGTTTCACCTAATGCATAAGTTTTGAAACTTATCATGTTACATAGTGCAGTATCATTCCGGCGTTTTTCAATTTTCCTGTATTGCGAAATTCGTCATTTCTCTCTAAAAATGACTCACCCAGTTATTCTATGAATTTTTATTCAAAAAAGAGAAAAAAAAGTGGAAAAATGATCGGGTTAGAAAACTGGTTCTTTTTCAGTTATGTTTTATATGATGACTGACAAGGTGATGGGGGAAAAAGTGAACATGAGTTTTTGGGAAAAAATCTGTTTCAAGGATTCTGTAACTTTCTTTTTTTTTGACTAATCGATTTTGCATATATTCAAAAAACGTTTTCCTTAAAGGTGGTGTACGGTGAAATTTTTTATTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTATCAGTCTGAGGCTTGTC</pcr_primer_p1>
		<pcr_primer_p2>GAGAGTTCCGATAAGTGATCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATTTATCAGTCTGAGGCTTGTCAGATCACTTATCAGAAATTTAGCCTTGAAATTACTAAAACAGTGAGACTGTAACTTTTTAAAATTTTCCATTTTCTGAAAATTCCAGTTTCACCTAACGCATAACTTTTGGAACCTTTCCAGATTACACAGTTCGGGTAAAGCTCAACTATGAAAAAACTCACTAGTCAGTTATTCATTGAAATTAGGAAGCGGTGAAAGTCTATCGGATCACTTATCGGAACTCTC</canonical_amplicon>
		<polymorphic_amplicon>TATTTATCAGTCTGAGGCTTGTCAGATCACTTATCAGAAATTTAGCCTTGAAATTACTAAAACAGTGAGACTGTAACTTTTTAAAATTTTCCATTTTCTGAAAATTCCAGTTTCACCTAACGCATAACTTTTGGAACCTTTCCAGATTACACAGTTCGGGTAAAGCTCAACTATGAAAAAACTCACTAGTWAGTTATTCATTGAAATTAGGAAGCGGTGAAAGTCTATCGGATCACTTATCGGAACTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24613</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>46245</contig_pos>
        <strand></strand>
        <context>ctcaaaattg[A/G]cCCTTTAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCACCTTTTGATACCTCTTACAGGAACACAAATCAATAGGCTCAAAATTG</left_flank>
        <right_flank>CCCTTTAACTAGACTTCAAAAATGCTGATACATGAAAAGATTCAATAATT</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAGCAGTTGATTGTGATGGTATGTGGGTGTTTTAAAACACATACCTTTTAATGTTTCATATAGAGTTTACCATGTTTTGTAGTAGATAGATTGACATTAGTATTCCGAACCCATTAGAGGCATACATTTTTGAATGTTGTGTTTTGAGGTGTGTTAGGAACTTGAGAGACAGATTTATGTTTAGAGATAGAGAGAGAGAGAGAGAGACAGGATAACATATCCTTTTTTTGTGAAAACAATTCCAGGCCGATTCCAACTAGAAAAGGAAATTATGACCCAAGATAAACCAAANCTAAATGAGATAGTTAGNCTAATGTTCATGTGGGAGAGCGTGTAGTGTGAATTAAAAACAAAATCTAAAATCTAAAATCGCTTGAAAAAGTGAACAGCCAGCCAACTTTGACTACATACATCTTTTGACATTCTGCTTAAAATTTTATCAGTTGACCACCTTTTGATACCTCTTACAGGAACACAAATCAATAGGCTCAAAATTGACCCTTTAACTAGACTTCAAAAATGCTGATACATGAAAAGATTCAATAATTGCAGTTTCAGTAATGTCTCAAACTTTTGGTTAGAAATTCAAAAAGGATATTTTTCGTCACCGTTTTATAAAGCAAATGACAGTTTATGTTCACCTGAAACCTTTTTTTCAGTCAATGGAAAACGATAACAGCAAGAAAAGTGACAATGTCCAACAGCAAGAAAAAATGCAGAATCTGAGAAATCAAGTGGATTCGGTTAAGGCGGTGAGTTTACAGCCAACTGCGGTCTTGGCCGCCATGGGTAATCCAAAAGCAGCGGATTTCAATTTGACAGCTTTGGCTCTTTGGTGTTTCTAATGGTTGCAAGAAGATTCAAGAAAATCAAAAATTCACAAATATCTGAAAAAGTGAAATTGAGAAAAGATTTTGAAATTACTTGCCACCAATCGCTTCTGGATTTCTGAAATATTGAAAACGAACTGAAACTGAAAATTTCTGAAAAACAAGAAT</canonical>
            <polymorphic>TGGAGCAGTTGATTGTGATGGTATGTGGGTGTTTTAAAACACATACCTTTTAATGTTTCATATAGAGTTTACCATGTTTTGTAGTAGATAGATTGACATTAGTATTCCGAACCCATTAGAGGCATACATTTTTGAATGTTGTGTTTTGAGGTGTGTTAGGAACTTGAGAGACAGATTTATGTTTAGAGATAGAGAGAGAGAGAGAGAGACAGGATAACATATCCTTTTTTTGTGAAAACAATTCCAGGCCGATTCCAACTAGAAAAGGAAATTATGACCCAAGATAAACCAAANCTAAATGAGATAGTTAGNCTAATGTTCATGTGGGAGAGCGTGTAGTGTGAATTAAAAACAAAATCTAAAATCTAAAATCGCTTGAAAAAGTGAACAGCCAGCCAACTTTGACTACATACATCTTTTGACATTCTGCTTAAAATTTTATCAGTTGACCACCTTTTGATACCTCTTACAGGAACACAAATCAATAGGCTCAAAATTGRCCCTTTAACTAGACTTCAAAAATGCTGATACATGAAAAGATTCAATAATTGCAGTTTCAGTAATGTCTCAAACTTTTGGTTAGAAATTCAAAAAGGATATTTTTCGTCACCGTTTTATAAAGCAAATGACAGTTTATGTTCACCTGAAACCTTTTTTTCAGTCAATGGAAAACGATAACAGCAAGAAAAGTGACAATGTCCAACAGCAAGAAAAAATGCAGAATCTGAGAAATCAAGTGGATTCGGTTAAGGCGGTGAGTTTACAGCCAACTGCGGTCTTGGCCGCCATGGGTAATCCAAAAGCAGCGGATTTCAATTTGACAGCTTTGGCTCTTTGGTGTTTCTAATGGTTGCAAGAAGATTCAAGAAAATCAAAAATTCACAAATATCTGAAAAAGTGAAATTGAGAAAAGATTTTGAAATTACTTGCCACCAATCGCTTCTGGATTTCTGAAATATTGAAAACGAACTGAAACTGAAAATTTCTGAAAAACAAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAAAATCTAAAATCGCTTGAA</pcr_primer_p1>
		<pcr_primer_p2>CGAAAAATATCCTTTTTGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTAAAATCTAAAATCGCTTGAAAAAGTGAACAGCCAGCCAACTTTGACTACATACATCTTTTGACATTCTGCTTAAAATTTTATCAGTTGACCACCTTTTGATACCTCTTACAGGAACACAAATCAATAGGCTCAAAATTGACCCTTTAACTAGACTTCAAAAATGCTGATACATGAAAAGATTCAATAATTGCAGTTTCAGTAATGTCTCAAACTTTTGGTTAGAAATTCAAAAAGGATATTTTTCG</canonical_amplicon>
		<polymorphic_amplicon>TCTAAAATCTAAAATCGCTTGAAAAAGTGAACAGCCAGCCAACTTTGACTACATACATCTTTTGACATTCTGCTTAAAATTTTATCAGTTGACCACCTTTTGATACCTCTTACAGGAACACAAATCAATAGGCTCAAAATTGRCCCTTTAACTAGACTTCAAAAATGCTGATACATGAAAAGATTCAATAATTGCAGTTTCAGTAATGTCTCAAACTTTTGGTTAGAAATTCAAAAAGGATATTTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24614</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>46266</contig_pos>
        <strand>+</strand>
        <context>AGACTTCAAA[A/T]ATGYTGATAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGGAACACAAATCAATAGGCTCAAAATTGACCCTTTAACTAGACTTCAAA</left_flank>
        <right_flank>ATGCTGATACATGAAAAGATTCAATAATTGCAGTTTCAGTAATGTCTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGTGGGTGTTTTAAAACACATACCTTTTAATGTTTCATATAGAGTTTACCATGTTTTGTAGTAGATAGATTGACATTAGTATTCCGAACCCATTAGAGGCATACATTTTTGAATGTTGTGTTTTGAGGTGTGTTAGGAACTTGAGAGACAGATTTATGTTTAGAGATAGAGAGAGAGAGAGAGAGACAGGATAACATATCCTTTTTTTGTGAAAACAATTCCAGGCCGATTCCAACTAGAAAAGGAAATTATGACCCAAGATAAACCAAANCTAAATGAGATAGTTAGNCTAATGTTCATGTGGGAGAGCGTGTAGTGTGAATTAAAAACAAAATCTAAAATCTAAAATCGCTTGAAAAAGTGAACAGCCAGCCAACTTTGACTACATACATCTTTTGACATTCTGCTTAAAATTTTATCAGTTGACCACCTTTTGATACCTCTTACAGGAACACAAATCAATAGGCTCAAAATTGACCCTTTAACTAGACTTCAAAAATGCTGATACATGAAAAGATTCAATAATTGCAGTTTCAGTAATGTCTCAAACTTTTGGTTAGAAATTCAAAAAGGATATTTTTCGTCACCGTTTTATAAAGCAAATGACAGTTTATGTTCACCTGAAACCTTTTTTTCAGTCAATGGAAAACGATAACAGCAAGAAAAGTGACAATGTCCAACAGCAAGAAAAAATGCAGAATCTGAGAAATCAAGTGGATTCGGTTAAGGCGGTGAGTTTACAGCCAACTGCGGTCTTGGCCGCCATGGGTAATCCAAAAGCAGCGGATTTCAATTTGACAGCTTTGGCTCTTTGGTGTTTCTAATGGTTGCAAGAAGATTCAAGAAAATCAAAAATTCACAAATATCTGAAAAAGTGAAATTGAGAAAAGATTTTGAAATTACTTGCCACCAATCGCTTCTGGATTTCTGAAATATTGAAAACGAACTGAAACTGAAAATTTCTGAAAAACAAGAATCGAACTTTTCATTTTTCAGGT</canonical>
            <polymorphic>TATGTGGGTGTTTTAAAACACATACCTTTTAATGTTTCATATAGAGTTTACCATGTTTTGTAGTAGATAGATTGACATTAGTATTCCGAACCCATTAGAGGCATACATTTTTGAATGTTGTGTTTTGAGGTGTGTTAGGAACTTGAGAGACAGATTTATGTTTAGAGATAGAGAGAGAGAGAGAGAGACAGGATAACATATCCTTTTTTTGTGAAAACAATTCCAGGCCGATTCCAACTAGAAAAGGAAATTATGACCCAAGATAAACCAAANCTAAATGAGATAGTTAGNCTAATGTTCATGTGGGAGAGCGTGTAGTGTGAATTAAAAACAAAATCTAAAATCTAAAATCGCTTGAAAAAGTGAACAGCCAGCCAACTTTGACTACATACATCTTTTGACATTCTGCTTAAAATTTTATCAGTTGACCACCTTTTGATACCTCTTACAGGAACACAAATCAATAGGCTCAAAATTGACCCTTTAACTAGACTTCAAAWATGCTGATACATGAAAAGATTCAATAATTGCAGTTTCAGTAATGTCTCAAACTTTTGGTTAGAAATTCAAAAAGGATATTTTTCGTCACCGTTTTATAAAGCAAATGACAGTTTATGTTCACCTGAAACCTTTTTTTCAGTCAATGGAAAACGATAACAGCAAGAAAAGTGACAATGTCCAACAGCAAGAAAAAATGCAGAATCTGAGAAATCAAGTGGATTCGGTTAAGGCGGTGAGTTTACAGCCAACTGCGGTCTTGGCCGCCATGGGTAATCCAAAAGCAGCGGATTTCAATTTGACAGCTTTGGCTCTTTGGTGTTTCTAATGGTTGCAAGAAGATTCAAGAAAATCAAAAATTCACAAATATCTGAAAAAGTGAAATTGAGAAAAGATTTTGAAATTACTTGCCACCAATCGCTTCTGGATTTCTGAAATATTGAAAACGAACTGAAACTGAAAATTTCTGAAAAACAAGAATCGAACTTTTCATTTTTCAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAAAATCTAAAATCGCTTGAA</pcr_primer_p1>
		<pcr_primer_p2>CGAAAAATATCCTTTTTGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTAAAATCTAAAATCGCTTGAAAAAGTGAACAGCCAGCCAACTTTGACTACATACATCTTTTGACATTCTGCTTAAAATTTTATCAGTTGACCACCTTTTGATACCTCTTACAGGAACACAAATCAATAGGCTCAAAATTGACCCTTTAACTAGACTTCAAAAATGCTGATACATGAAAAGATTCAATAATTGCAGTTTCAGTAATGTCTCAAACTTTTGGTTAGAAATTCAAAAAGGATATTTTTCG</canonical_amplicon>
		<polymorphic_amplicon>TCTAAAATCTAAAATCGCTTGAAAAAGTGAACAGCCAGCCAACTTTGACTACATACATCTTTTGACATTCTGCTTAAAATTTTATCAGTTGACCACCTTTTGATACCTCTTACAGGAACACAAATCAATAGGCTCAAAATTGACCCTTTAACTAGACTTCAAAWATGCTGATACATGAAAAGATTCAATAATTGCAGTTTCAGTAATGTCTCAAACTTTTGGTTAGAAATTCAAAAAGGATATTTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24615</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>46270</contig_pos>
        <strand>+</strand>
        <context>TTCAAAWATG[C/T]TGATACATGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACACAAATCAATAGGCTCAAAATTGACCCTTTAACTAGACTTCAAAAATG</left_flank>
        <right_flank>TGATACATGAAAAGATTCAATAATTGCAGTTTCAGTAATGTCTCAAACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGTGTTTTAAAACACATACCTTTTAATGTTTCATATAGAGTTTACCATGTTTTGTAGTAGATAGATTGACATTAGTATTCCGAACCCATTAGAGGCATACATTTTTGAATGTTGTGTTTTGAGGTGTGTTAGGAACTTGAGAGACAGATTTATGTTTAGAGATAGAGAGAGAGAGAGAGAGACAGGATAACATATCCTTTTTTTGTGAAAACAATTCCAGGCCGATTCCAACTAGAAAAGGAAATTATGACCCAAGATAAACCAAANCTAAATGAGATAGTTAGNCTAATGTTCATGTGGGAGAGCGTGTAGTGTGAATTAAAAACAAAATCTAAAATCTAAAATCGCTTGAAAAAGTGAACAGCCAGCCAACTTTGACTACATACATCTTTTGACATTCTGCTTAAAATTTTATCAGTTGACCACCTTTTGATACCTCTTACAGGAACACAAATCAATAGGCTCAAAATTGACCCTTTAACTAGACTTCAAAAATGCTGATACATGAAAAGATTCAATAATTGCAGTTTCAGTAATGTCTCAAACTTTTGGTTAGAAATTCAAAAAGGATATTTTTCGTCACCGTTTTATAAAGCAAATGACAGTTTATGTTCACCTGAAACCTTTTTTTCAGTCAATGGAAAACGATAACAGCAAGAAAAGTGACAATGTCCAACAGCAAGAAAAAATGCAGAATCTGAGAAATCAAGTGGATTCGGTTAAGGCGGTGAGTTTACAGCCAACTGCGGTCTTGGCCGCCATGGGTAATCCAAAAGCAGCGGATTTCAATTTGACAGCTTTGGCTCTTTGGTGTTTCTAATGGTTGCAAGAAGATTCAAGAAAATCAAAAATTCACAAATATCTGAAAAAGTGAAATTGAGAAAAGATTTTGAAATTACTTGCCACCAATCGCTTCTGGATTTCTGAAATATTGAAAACGAACTGAAACTGAAAATTTCTGAAAAACAAGAATCGAACTTTTCATTTTTCAGGTAATG</canonical>
            <polymorphic>TGGGTGTTTTAAAACACATACCTTTTAATGTTTCATATAGAGTTTACCATGTTTTGTAGTAGATAGATTGACATTAGTATTCCGAACCCATTAGAGGCATACATTTTTGAATGTTGTGTTTTGAGGTGTGTTAGGAACTTGAGAGACAGATTTATGTTTAGAGATAGAGAGAGAGAGAGAGAGACAGGATAACATATCCTTTTTTTGTGAAAACAATTCCAGGCCGATTCCAACTAGAAAAGGAAATTATGACCCAAGATAAACCAAANCTAAATGAGATAGTTAGNCTAATGTTCATGTGGGAGAGCGTGTAGTGTGAATTAAAAACAAAATCTAAAATCTAAAATCGCTTGAAAAAGTGAACAGCCAGCCAACTTTGACTACATACATCTTTTGACATTCTGCTTAAAATTTTATCAGTTGACCACCTTTTGATACCTCTTACAGGAACACAAATCAATAGGCTCAAAATTGACCCTTTAACTAGACTTCAAAAATGYTGATACATGAAAAGATTCAATAATTGCAGTTTCAGTAATGTCTCAAACTTTTGGTTAGAAATTCAAAAAGGATATTTTTCGTCACCGTTTTATAAAGCAAATGACAGTTTATGTTCACCTGAAACCTTTTTTTCAGTCAATGGAAAACGATAACAGCAAGAAAAGTGACAATGTCCAACAGCAAGAAAAAATGCAGAATCTGAGAAATCAAGTGGATTCGGTTAAGGCGGTGAGTTTACAGCCAACTGCGGTCTTGGCCGCCATGGGTAATCCAAAAGCAGCGGATTTCAATTTGACAGCTTTGGCTCTTTGGTGTTTCTAATGGTTGCAAGAAGATTCAAGAAAATCAAAAATTCACAAATATCTGAAAAAGTGAAATTGAGAAAAGATTTTGAAATTACTTGCCACCAATCGCTTCTGGATTTCTGAAATATTGAAAACGAACTGAAACTGAAAATTTCTGAAAAACAAGAATCGAACTTTTCATTTTTCAGGTAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAAAATCTAAAATCGCTTGAA</pcr_primer_p1>
		<pcr_primer_p2>CGAAAAATATCCTTTTTGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTAAAATCTAAAATCGCTTGAAAAAGTGAACAGCCAGCCAACTTTGACTACATACATCTTTTGACATTCTGCTTAAAATTTTATCAGTTGACCACCTTTTGATACCTCTTACAGGAACACAAATCAATAGGCTCAAAATTGACCCTTTAACTAGACTTCAAAAATGCTGATACATGAAAAGATTCAATAATTGCAGTTTCAGTAATGTCTCAAACTTTTGGTTAGAAATTCAAAAAGGATATTTTTCG</canonical_amplicon>
		<polymorphic_amplicon>TCTAAAATCTAAAATCGCTTGAAAAAGTGAACAGCCAGCCAACTTTGACTACATACATCTTTTGACATTCTGCTTAAAATTTTATCAGTTGACCACCTTTTGATACCTCTTACAGGAACACAAATCAATAGGCTCAAAATTGACCCTTTAACTAGACTTCAAAAATGYTGATACATGAAAAGATTCAATAATTGCAGTTTCAGTAATGTCTCAAACTTTTGGTTAGAAATTCAAAAAGGATATTTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24616</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>46353</contig_pos>
        <strand>+</strand>
        <context>TATTTTTCGT[C/G]ACCGTTTTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAGTAATGTCTCAAACTTTTGGTTAGAAATTCAAAAAGGATATTTTTCGT</left_flank>
        <right_flank>ACCGTTTTATAAAGCAAATGACAGTTTATGTTCACCTGAAACCTTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACCCATTAGAGGCATACATTTTTGAATGTTGTGTTTTGAGGTGTGTTAGGAACTTGAGAGACAGATTTATGTTTAGAGATAGAGAGAGAGAGAGAGAGACAGGATAACATATCCTTTTTTTGTGAAAACAATTCCAGGCCGATTCCAACTAGAAAAGGAAATTATGACCCAAGATAAACCAAANCTAAATGAGATAGTTAGNCTAATGTTCATGTGGGAGAGCGTGTAGTGTGAATTAAAAACAAAATCTAAAATCTAAAATCGCTTGAAAAAGTGAACAGCCAGCCAACTTTGACTACATACATCTTTTGACATTCTGCTTAAAATTTTATCAGTTGACCACCTTTTGATACCTCTTACAGGAACACAAATCAATAGGCTCAAAATTGACCCTTTAACTAGACTTCAAAAATGCTGATACATGAAAAGATTCAATAATTGCAGTTTCAGTAATGTCTCAAACTTTTGGTTAGAAATTCAAAAAGGATATTTTTCGTCACCGTTTTATAAAGCAAATGACAGTTTATGTTCACCTGAAACCTTTTTTTCAGTCAATGGAAAACGATAACAGCAAGAAAAGTGACAATGTCCAACAGCAAGAAAAAATGCAGAATCTGAGAAATCAAGTGGATTCGGTTAAGGCGGTGAGTTTACAGCCAACTGCGGTCTTGGCCGCCATGGGTAATCCAAAAGCAGCGGATTTCAATTTGACAGCTTTGGCTCTTTGGTGTTTCTAATGGTTGCAAGAAGATTCAAGAAAATCAAAAATTCACAAATATCTGAAAAAGTGAAATTGAGAAAAGATTTTGAAATTACTTGCCACCAATCGCTTCTGGATTTCTGAAATATTGAAAACGAACTGAAACTGAAAATTTCTGAAAAACAAGAATCGAACTTTTCATTTTTCAGGTAATGGTGGACAACGTCGAGAGAATTCTGGAGCGTGGCGAGCGATTAGACAACATCGAACGACGAACGGAGCAGTTGAATGCGACGGT</canonical>
            <polymorphic>GAACCCATTAGAGGCATACATTTTTGAATGTTGTGTTTTGAGGTGTGTTAGGAACTTGAGAGACAGATTTATGTTTAGAGATAGAGAGAGAGAGAGAGAGACAGGATAACATATCCTTTTTTTGTGAAAACAATTCCAGGCCGATTCCAACTAGAAAAGGAAATTATGACCCAAGATAAACCAAANCTAAATGAGATAGTTAGNCTAATGTTCATGTGGGAGAGCGTGTAGTGTGAATTAAAAACAAAATCTAAAATCTAAAATCGCTTGAAAAAGTGAACAGCCAGCCAACTTTGACTACATACATCTTTTGACATTCTGCTTAAAATTTTATCAGTTGACCACCTTTTGATACCTCTTACAGGAACACAAATCAATAGGCTCAAAATTGACCCTTTAACTAGACTTCAAAAATGCTGATACATGAAAAGATTCAATAATTGCAGTTTCAGTAATGTCTCAAACTTTTGGTTAGAAATTCAAAAAGGATATTTTTCGTSACCGTTTTATAAAGCAAATGACAGTTTATGTTCACCTGAAACCTTTTTTTCAGTCAATGGAAAACGATAACAGCAAGAAAAGTGACAATGTCCAACAGCAAGAAAAAATGCAGAATCTGAGAAATCAAGTGGATTCGGTTAAGGCGGTGAGTTTACAGCCAACTGCGGTCTTGGCCGCCATGGGTAATCCAAAAGCAGCGGATTTCAATTTGACAGCTTTGGCTCTTTGGTGTTTCTAATGGTTGCAAGAAGATTCAAGAAAATCAAAAATTCACAAATATCTGAAAAAGTGAAATTGAGAAAAGATTTTGAAATTACTTGCCACCAATCGCTTCTGGATTTCTGAAATATTGAAAACGAACTGAAACTGAAAATTTCTGAAAAACAAGAATCGAACTTTTCATTTTTCAGGTAATGGTGGACAACGTCGAGAGAATTCTGGAGCGTGGCGAGCGATTAGACAACATCGAACGACGAACGGAGCAGTTGAATGCGACGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>132 96 92 83 79 66 52 50 47 43 42 35 33 32 28 25 18 18 10 10 5 2 2</canonical_bands>
                <polymorphic_bands>165 96 92 83 79 66 52 50 47 43 42 35 32 28 25 18 18 10 10 5 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>497 419 84</canonical_bands>
                <polymorphic_bands>581 419</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTCAATAATTGCAGTTTCAGT</pcr_primer_p1>
		<pcr_primer_p2>CAGTTGGCTGTAAACTCACC</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>GATTCAATAATTGCAGTTTCAGTAATGTCTCAAACTTTTGGTTAGAAATTCAAAAAGGATATTTTTCGTCACCGTTTTATAAAGCAAATGACAGTTTATGTTCACCTGAAACCTTTTTTTCAGTCAATGGAAAACGATAACAGCAAGAAAAGTGACAATGTCCAACAGCAAGAAAAAATGCAGAATCTGAGAAATCAAGTGGATTCGGTTAAGGCGGTGAGTTTACAGCCAACTG</canonical_amplicon>
		<polymorphic_amplicon>GATTCAATAATTGCAGTTTCAGTAATGTCTCAAACTTTTGGTTAGAAATTCAAAAAGGATATTTTTCGTSACCGTTTTATAAAGCAAATGACAGTTTATGTTCACCTGAAACCTTTTTTTCAGTCAATGGAAAACGATAACAGCAAGAAAAGTGACAATGTCCAACAGCAAGAAAAAATGCAGAATCTGAGAAATCAAGTGGATTCGGTTAAGGCGGTGAGTTTACAGCCAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24617</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>46438</contig_pos>
        <strand>+</strand>
        <context>AAGAAAAGTG[A/C]CAATGTCCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCTGAAACCTTTTTTTCAGTCAATGGAAAACGATAACAGCAAGAAAAGTG</left_flank>
        <right_flank>CAATGTCCAACAGCAAGAAAAAATGCAGAATCTGAGAAATCAAGTGGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAGAGAGAGAGAGACAGGATAACATATCCTTTTTTTGTGAAAACAATTCCAGGCCGATTCCAACTAGAAAAGGAAATTATGACCCAAGATAAACCAAANCTAAATGAGATAGTTAGNCTAATGTTCATGTGGGAGAGCGTGTAGTGTGAATTAAAAACAAAATCTAAAATCTAAAATCGCTTGAAAAAGTGAACAGCCAGCCAACTTTGACTACATACATCTTTTGACATTCTGCTTAAAATTTTATCAGTTGACCACCTTTTGATACCTCTTACAGGAACACAAATCAATAGGCTCAAAATTGACCCTTTAACTAGACTTCAAAAATGCTGATACATGAAAAGATTCAATAATTGCAGTTTCAGTAATGTCTCAAACTTTTGGTTAGAAATTCAAAAAGGATATTTTTCGTCACCGTTTTATAAAGCAAATGACAGTTTATGTTCACCTGAAACCTTTTTTTCAGTCAATGGAAAACGATAACAGCAAGAAAAGTGACAATGTCCAACAGCAAGAAAAAATGCAGAATCTGAGAAATCAAGTGGATTCGGTTAAGGCGGTGAGTTTACAGCCAACTGCGGTCTTGGCCGCCATGGGTAATCCAAAAGCAGCGGATTTCAATTTGACAGCTTTGGCTCTTTGGTGTTTCTAATGGTTGCAAGAAGATTCAAGAAAATCAAAAATTCACAAATATCTGAAAAAGTGAAATTGAGAAAAGATTTTGAAATTACTTGCCACCAATCGCTTCTGGATTTCTGAAATATTGAAAACGAACTGAAACTGAAAATTTCTGAAAAACAAGAATCGAACTTTTCATTTTTCAGGTAATGGTGGACAACGTCGAGAGAATTCTGGAGCGTGGCGAGCGATTAGACAACATCGAACGACGAACGGAGCAGTTGAATGCGACGGTATGTGGGATTTTTAGAAAACATACCTTTTAATGTTTCATATAAGTTTACCATTTTTTGTAGTCATAATTGACATTAGTCTTCCAA</canonical>
            <polymorphic>GAGAGAGAGAGAGAGACAGGATAACATATCCTTTTTTTGTGAAAACAATTCCAGGCCGATTCCAACTAGAAAAGGAAATTATGACCCAAGATAAACCAAANCTAAATGAGATAGTTAGNCTAATGTTCATGTGGGAGAGCGTGTAGTGTGAATTAAAAACAAAATCTAAAATCTAAAATCGCTTGAAAAAGTGAACAGCCAGCCAACTTTGACTACATACATCTTTTGACATTCTGCTTAAAATTTTATCAGTTGACCACCTTTTGATACCTCTTACAGGAACACAAATCAATAGGCTCAAAATTGACCCTTTAACTAGACTTCAAAAATGCTGATACATGAAAAGATTCAATAATTGCAGTTTCAGTAATGTCTCAAACTTTTGGTTAGAAATTCAAAAAGGATATTTTTCGTCACCGTTTTATAAAGCAAATGACAGTTTATGTTCACCTGAAACCTTTTTTTCAGTCAATGGAAAACGATAACAGCAAGAAAAGTGMCAATGTCCAACAGCAAGAAAAAATGCAGAATCTGAGAAATCAAGTGGATTCGGTTAAGGCGGTGAGTTTACAGCCAACTGCGGTCTTGGCCGCCATGGGTAATCCAAAAGCAGCGGATTTCAATTTGACAGCTTTGGCTCTTTGGTGTTTCTAATGGTTGCAAGAAGATTCAAGAAAATCAAAAATTCACAAATATCTGAAAAAGTGAAATTGAGAAAAGATTTTGAAATTACTTGCCACCAATCGCTTCTGGATTTCTGAAATATTGAAAACGAACTGAAACTGAAAATTTCTGAAAAACAAGAATCGAACTTTTCATTTTTCAGGTAATGGTGGACAACGTCGAGAGAATTCTGGAGCGTGGCGAGCGATTAGACAACATCGAACGACGAACGGAGCAGTTGAATGCGACGGTATGTGGGATTTTTAGAAAACATACCTTTTAATGTTTCATATAAGTTTACCATTTTTTGTAGTCATAATTGACATTAGTCTTCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNGTC</site>
                <isoschizomers>
                    <enzyme>AspI</enzyme>
                    <enzyme>PflFI</enzyme>
                    <enzyme>PsyI</enzyme>
                    <enzyme>TelI</enzyme>
                    <enzyme>Tth111I</enzyme>
                </isoschizomers>
                <canonical_bands>502 337 161</canonical_bands>
                <polymorphic_bands>839 161</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 412 84</canonical_bands>
                <polymorphic_bands>588 412</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>504 412 84</canonical_bands>
                <polymorphic_bands>588 412</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATGTTCACCTGAAACCTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGAATTTTTGATTTTCTTGAATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTATGTTCACCTGAAACCTTTTTTTCAGTCAATGGAAAACGATAACAGCAAGAAAAGTGACAATGTCCAACAGCAAGAAAAAATGCAGAATCTGAGAAATCAAGTGGATTCGGTTAAGGCGGTGAGTTTACAGCCAACTGCGGTCTTGGCCGCCATGGGTAATCCAAAAGCAGCGGATTTCAATTTGACAGCTTTGGCTCTTTGGTGTTTCTAATGGTTGCAAGAAGATTCAAGAAAATCAAAAATTCA</canonical_amplicon>
		<polymorphic_amplicon>TTATGTTCACCTGAAACCTTTTTTTCAGTCAATGGAAAACGATAACAGCAAGAAAAGTGMCAATGTCCAACAGCAAGAAAAAATGCAGAATCTGAGAAATCAAGTGGATTCGGTTAAGGCGGTGAGTTTACAGCCAACTGCGGTCTTGGCCGCCATGGGTAATCCAAAAGCAGCGGATTTCAATTTGACAGCTTTGGCTCTTTGGTGTTTCTAATGGTTGCAAGAAGATTCAAGAAAATCAAAAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24618</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>46473</contig_pos>
        <strand>+</strand>
        <context>GCAGAATCTG[A/T]GAAATCAAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACAGCAAGAAAAGTGACAATGTCCAACAGCAAGAAAAAATGCAGAATCTG</left_flank>
        <right_flank>GAAATCAAGTGGATTCGGTTAAGGCGGTGAGTTTACAGCCAACTGCGGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGTGAAAACAATTCCAGGCCGATTCCAACTAGAAAAGGAAATTATGACCCAAGATAAACCAAANCTAAATGAGATAGTTAGNCTAATGTTCATGTGGGAGAGCGTGTAGTGTGAATTAAAAACAAAATCTAAAATCTAAAATCGCTTGAAAAAGTGAACAGCCAGCCAACTTTGACTACATACATCTTTTGACATTCTGCTTAAAATTTTATCAGTTGACCACCTTTTGATACCTCTTACAGGAACACAAATCAATAGGCTCAAAATTGACCCTTTAACTAGACTTCAAAAATGCTGATACATGAAAAGATTCAATAATTGCAGTTTCAGTAATGTCTCAAACTTTTGGTTAGAAATTCAAAAAGGATATTTTTCGTCACCGTTTTATAAAGCAAATGACAGTTTATGTTCACCTGAAACCTTTTTTTCAGTCAATGGAAAACGATAACAGCAAGAAAAGTGACAATGTCCAACAGCAAGAAAAAATGCAGAATCTGAGAAATCAAGTGGATTCGGTTAAGGCGGTGAGTTTACAGCCAACTGCGGTCTTGGCCGCCATGGGTAATCCAAAAGCAGCGGATTTCAATTTGACAGCTTTGGCTCTTTGGTGTTTCTAATGGTTGCAAGAAGATTCAAGAAAATCAAAAATTCACAAATATCTGAAAAAGTGAAATTGAGAAAAGATTTTGAAATTACTTGCCACCAATCGCTTCTGGATTTCTGAAATATTGAAAACGAACTGAAACTGAAAATTTCTGAAAAACAAGAATCGAACTTTTCATTTTTCAGGTAATGGTGGACAACGTCGAGAGAATTCTGGAGCGTGGCGAGCGATTAGACAACATCGAACGACGAACGGAGCAGTTGAATGCGACGGTATGTGGGATTTTTAGAAAACATACCTTTTAATGTTTCATATAAGTTTACCATTTTTTGTAGTCATAATTGACATTAGTCTTCCAAACCCATAAGAGCATACATTTTTGAAAAAAGCGTTT</canonical>
            <polymorphic>TTTGTGAAAACAATTCCAGGCCGATTCCAACTAGAAAAGGAAATTATGACCCAAGATAAACCAAANCTAAATGAGATAGTTAGNCTAATGTTCATGTGGGAGAGCGTGTAGTGTGAATTAAAAACAAAATCTAAAATCTAAAATCGCTTGAAAAAGTGAACAGCCAGCCAACTTTGACTACATACATCTTTTGACATTCTGCTTAAAATTTTATCAGTTGACCACCTTTTGATACCTCTTACAGGAACACAAATCAATAGGCTCAAAATTGACCCTTTAACTAGACTTCAAAAATGCTGATACATGAAAAGATTCAATAATTGCAGTTTCAGTAATGTCTCAAACTTTTGGTTAGAAATTCAAAAAGGATATTTTTCGTCACCGTTTTATAAAGCAAATGACAGTTTATGTTCACCTGAAACCTTTTTTTCAGTCAATGGAAAACGATAACAGCAAGAAAAGTGACAATGTCCAACAGCAAGAAAAAATGCAGAATCTGWGAAATCAAGTGGATTCGGTTAAGGCGGTGAGTTTACAGCCAACTGCGGTCTTGGCCGCCATGGGTAATCCAAAAGCAGCGGATTTCAATTTGACAGCTTTGGCTCTTTGGTGTTTCTAATGGTTGCAAGAAGATTCAAGAAAATCAAAAATTCACAAATATCTGAAAAAGTGAAATTGAGAAAAGATTTTGAAATTACTTGCCACCAATCGCTTCTGGATTTCTGAAATATTGAAAACGAACTGAAACTGAAAATTTCTGAAAAACAAGAATCGAACTTTTCATTTTTCAGGTAATGGTGGACAACGTCGAGAGAATTCTGGAGCGTGGCGAGCGATTAGACAACATCGAACGACGAACGGAGCAGTTGAATGCGACGGTATGTGGGATTTTTAGAAAACATACCTTTTAATGTTTCATATAAGTTTACCATTTTTTGTAGTCATAATTGACATTAGTCTTCCAAACCCATAAGAGCATACATTTTTGAAAAAAGCGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>498 241 165 61 35</canonical_bands>
                <polymorphic_bands>663 241 61 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATGTTCACCTGAAACCTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGAATTTTTGATTTTCTTGAATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTATGTTCACCTGAAACCTTTTTTTCAGTCAATGGAAAACGATAACAGCAAGAAAAGTGACAATGTCCAACAGCAAGAAAAAATGCAGAATCTGAGAAATCAAGTGGATTCGGTTAAGGCGGTGAGTTTACAGCCAACTGCGGTCTTGGCCGCCATGGGTAATCCAAAAGCAGCGGATTTCAATTTGACAGCTTTGGCTCTTTGGTGTTTCTAATGGTTGCAAGAAGATTCAAGAAAATCAAAAATTCA</canonical_amplicon>
		<polymorphic_amplicon>TTATGTTCACCTGAAACCTTTTTTTCAGTCAATGGAAAACGATAACAGCAAGAAAAGTGACAATGTCCAACAGCAAGAAAAAATGCAGAATCTGWGAAATCAAGTGGATTCGGTTAAGGCGGTGAGTTTACAGCCAACTGCGGTCTTGGCCGCCATGGGTAATCCAAAAGCAGCGGATTTCAATTTGACAGCTTTGGCTCTTTGGTGTTTCTAATGGTTGCAAGAAGATTCAAGAAAATCAAAAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24619</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>55164</contig_pos>
        <strand></strand>
        <context>aatttttgtt[A/C]caatcaaaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTTTATCATTTTGTACATCTCTTCAAGTACTACATTTTAATTTTTGTT</left_flank>
        <right_flank>CAATCAAAAATACTAATTTTGAGCCGAGTTATTGGTCGGCAAATCGACAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTCTGGAACAGCGTGAAAGAGCGCATCAGCGCCGCGTTTTCCGTATGTCGTTTCCCGATGCACCACCACTTGGAAGGACTCCGAAGCCAGTTTATCCGATAGCCAAGCACCCGGTGGGCCAATGGGGCGTGGAGTTCGGAGATGATGTTGTCCCAATCTTGCCTCCAAATGCCACCGTAGACTTCAAGTCGTGGTCGGTGAGTATTTTTGAGTTTTTTAGGTTAAAGAGGCTTTGGCGGGGGATCATAACTTTGTTCAAACTTTGAATTTCTGTTTGAACTAAAAAGTGCAACATAGAACTTAAGGAGCTCTACAAAATGATATATAATGCAACTATATTTAAACACTGACTTTTGAACTAGAGACAGTAGGAGCTTTCTAGACTGATTTTAAAAATCTAGACGTTTCACGGCTTCTAGTTTAAGAATCGGCAGTTCGGTTTTTTGAATTTTTATCATTTTGTACATCTCTTCAAGTACTACATTTTAATTTTTGTTACAATCAAAAATACTAATTTTGAGCCGAGTTATTGGTCGGCAAATCGACAAGTAACATTTGACAGAATATAATTTTTTGTATTATATAGCTATTTAATTAGTTTGACATTTTGAATGATGATTTCTAATATAAATGAAACAGTTTATTTTTAAAATTTCAAACAGAAAAAAAAAAACCAAAAAACCTAGCTTTGAAAACTCTGCGACCCTAAAACACAGAGCGCTTACCAACCGTAAATACCGCAATGAGACTCACCTCACTACATGTCACATGTCAAGTCAGGTATAGTACCTAAACTTTGAGCTCAATAATCTCGGCTAATTCAAAAGATAACGGAAATTGGTCAATTAATAAAATGCTACTCATTTATGCCTGGACTTTTCCACCAGCATTTTATCAGTTGGCGGATTTTTGATATCTCTGATAGCAACCGAGATAATTGAGCTCAAAGTGAACGTATAGGATGGGTTTTTAGAGTATTATGATTAGTTTGAGTGCCT</canonical>
            <polymorphic>ACTTCTGGAACAGCGTGAAAGAGCGCATCAGCGCCGCGTTTTCCGTATGTCGTTTCCCGATGCACCACCACTTGGAAGGACTCCGAAGCCAGTTTATCCGATAGCCAAGCACCCGGTGGGCCAATGGGGCGTGGAGTTCGGAGATGATGTTGTCCCAATCTTGCCTCCAAATGCCACCGTAGACTTCAAGTCGTGGTCGGTGAGTATTTTTGAGTTTTTTAGGTTAAAGAGGCTTTGGCGGGGGATCATAACTTTGTTCAAACTTTGAATTTCTGTTTGAACTAAAAAGTGCAACATAGAACTTAAGGAGCTCTACAAAATGATATATAATGCAACTATATTTAAACACTGACTTTTGAACTAGAGACAGTAGGAGCTTTCTAGACTGATTTTAAAAATCTAGACGTTTCACGGCTTCTAGTTTAAGAATCGGCAGTTCGGTTTTTTGAATTTTTATCATTTTGTACATCTCTTCAAGTACTACATTTTAATTTTTGTTMCAATCAAAAATACTAATTTTGAGCCGAGTTATTGGTCGGCAAATCGACAAGTAACATTTGACAGAATATAATTTTTTGTATTATATAGCTATTTAATTAGTTTGACATTTTGAATGATGATTTCTAATATAAATGAAACAGTTTATTTTTAAAATTTCAAACAGAAAAAAAAAAACCAAAAAACCTAGCTTTGAAAACTCTGCGACCCTAAAACACAGAGCGCTTACCAACCGTAAATACCGCAATGAGACTCACCTCACTACATGTCACATGTCAAGTCAGGTATAGTACCTAAACTTTGAGCTCAATAATCTCGGCTAATTCAAAAGATAACGGAAATTGGTCAATTAATAAAATGCTACTCATTTATGCCTGGACTTTTCCACCAGCATTTTATCAGTTGGCGGATTTTTGATATCTCTGATAGCAACCGAGATAATTGAGCTCAAAGTGAACGTATAGGATGGGTTTTTAGAGTATTATGATTAGTTTGAGTGCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>496 235 215 54</canonical_bands>
                <polymorphic_bands>550 235 215</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTAGGTTAAAGAGGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>CATCATTCAAAATGTCAAACTAA</pcr_primer_p2>
		<pcr_amplicon_size>404</pcr_amplicon_size>
		<canonical_amplicon>TTTTTAGGTTAAAGAGGCTTTGGCGGGGGATCATAACTTTGTTCAAACTTTGAATTTCTGTTTGAACTAAAAAGTGCAACATAGAACTTAAGGAGCTCTACAAAATGATATATAATGCAACTATATTTAAACACTGACTTTTGAACTAGAGACAGTAGGAGCTTTCTAGACTGATTTTAAAAATCTAGACGTTTCACGGCTTCTAGTTTAAGAATCGGCAGTTCGGTTTTTTGAATTTTTATCATTTTGTACATCTCTTCAAGTACTACATTTTAATTTTTGTTACAATCAAAAATACTAATTTTGAGCCGAGTTATTGGTCGGCAAATCGACAAGTAACATTTGACAGAATATAATTTTTTGTATTATATAGCTATTTAATTAGTTTGACATTTTGAATGATG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTAGGTTAAAGAGGCTTTGGCGGGGGATCATAACTTTGTTCAAACTTTGAATTTCTGTTTGAACTAAAAAGTGCAACATAGAACTTAAGGAGCTCTACAAAATGATATATAATGCAACTATATTTAAACACTGACTTTTGAACTAGAGACAGTAGGAGCTTTCTAGACTGATTTTAAAAATCTAGACGTTTCACGGCTTCTAGTTTAAGAATCGGCAGTTCGGTTTTTTGAATTTTTATCATTTTGTACATCTCTTCAAGTACTACATTTTAATTTTTGTTMCAATCAAAAATACTAATTTTGAGCCGAGTTATTGGTCGGCAAATCGACAAGTAACATTTGACAGAATATAATTTTTTGTATTATATAGCTATTTAATTAGTTTGACATTTTGAATGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24620</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>64231</contig_pos>
        <strand>+</strand>
        <context>GAGGAATCTG[C/T]AAAAAAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTG</left_flank>
        <right_flank>AAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGGAACCAAGATAATTGATTTAATGTGCAAATATTTACATGGTGTTACTGAAGCATTCACGGGAAGGTCCACTTTAAGGCATTTTATTTCGGTTCCTGTAAACGATATCAAAAAGTTTTCAACTGACGAAATATTTGTGATATTTTGATAAATGTTTTGTTAGTTGATTACATTTTGATATCTTTCACAGGAAGCGAGATAAATTGAGTAGGAGTAACGGTTTAACTTTTCTAGCGATTTTGTGATTTCACAATTAGATTTTTTCATAGTATTGAATCGAATGCTACTGTGAAACAATAATTTTTAAACAGTTATTGAACTATTTGAAACAGGAAAAACAGAATTTTTTCTGGTCCAACAAGTTTGAATGTTTAGTTTCTCTTTCTTGTTTTAGTTATCTACCGAAAGGTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCAAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTTCAAACTGGAAAGTCACCATGGAGGAACCCAACGATTTTCTTCGTCGAATTTTGGATAATCTTTACCAGAAAGCCACTGTAGCACCCAATAATGATGATGAACACGGAGCGA</canonical>
            <polymorphic>ATAGGAACCAAGATAATTGATTTAATGTGCAAATATTTACATGGTGTTACTGAAGCATTCACGGGAAGGTCCACTTTAAGGCATTTTATTTCGGTTCCTGTAAACGATATCAAAAAGTTTTCAACTGACGAAATATTTGTGATATTTTGATAAATGTTTTGTTAGTTGATTACATTTTGATATCTTTCACAGGAAGCGAGATAAATTGAGTAGGAGTAACGGTTTAACTTTTCTAGCGATTTTGTGATTTCACAATTAGATTTTTTCATAGTATTGAATCGAATGCTACTGTGAAACAATAATTTTTAAACAGTTATTGAACTATTTGAAACAGGAAAAACAGAATTTTTTCTGGTCCAACAAGTTTGAATGTTTAGTTTCTCTTTCTTGTTTTAGTTATCTACCGAAAGGTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTGYAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCAAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTTCAAACTGGAAAGTCACCATGGAGGAACCCAACGATTTTCTTCGTCGAATTTTGGATAATCTTTACCAGAAAGCCACTGTAGCACCCAATAATGATGATGAACACGGAGCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>449 300 126 45 40 31 9</canonical_bands>
                <polymorphic_bands>449 300 126 45 40 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCCAAAATTATTCATCAAA</pcr_primer_p1>
		<pcr_primer_p2>AATCAGAAGAGACGGTTATACCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCAAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTGYAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCAAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24621</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>64417</contig_pos>
        <strand>+</strand>
        <context>CACCTTCGAG[C/T]AAAAMWAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGGTATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAG</left_flank>
        <right_flank>AAAAAAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACAGGAAGCGAGATAAATTGAGTAGGAGTAACGGTTTAACTTTTCTAGCGATTTTGTGATTTCACAATTAGATTTTTTCATAGTATTGAATCGAATGCTACTGTGAAACAATAATTTTTAAACAGTTATTGAACTATTTGAAACAGGAAAAACAGAATTTTTTCTGGTCCAACAAGTTTGAATGTTTAGTTTCTCTTTCTTGTTTTAGTTATCTACCGAAAGGTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCAAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTTCAAACTGGAAAGTCACCATGGAGGAACCCAACGATTTTCTTCGTCGAATTTTGGATAATCTTTACCAGAAAGCCACTGTAGCACCCAATAATGATGATGAACACGGAGCGATAGGTAGGTACCAAGTATTTAGAAACCGTTAATTTTATAAGGACCTTACAAATTAGGGGTTCCAAAAAATTTAGAGGAACACAAAGAGACCCTTAAAGCAACTTATGGGATGTGGAAAATATGAACCTTGGCCATTTTTCAATTTTTGTACCTCATTTTTTTGTTCCCTTTTTTGACCGGGTTCTT</canonical>
            <polymorphic>TCACAGGAAGCGAGATAAATTGAGTAGGAGTAACGGTTTAACTTTTCTAGCGATTTTGTGATTTCACAATTAGATTTTTTCATAGTATTGAATCGAATGCTACTGTGAAACAATAATTTTTAAACAGTTATTGAACTATTTGAAACAGGAAAAACAGAATTTTTTCTGGTCCAACAAGTTTGAATGTTTAGTTTCTCTTTCTTGTTTTAGTTATCTACCGAAAGGTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCAAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGYAAAAAAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTTCAAACTGGAAAGTCACCATGGAGGAACCCAACGATTTTCTTCGTCGAATTTTGGATAATCTTTACCAGAAAGCCACTGTAGCACCCAATAATGATGATGAACACGGAGCGATAGGTAGGTACCAAGTATTTAGAAACCGTTAATTTTATAAGGACCTTACAAATTAGGGGTTCCAAAAAATTTAGAGGAACACAAAGAGACCCTTAAAGCAACTTATGGGATGTGGAAAATATGAACCTTGGCCATTTTTCAATTTTTGTACCTCATTTTTTTGTTCCCTTTTTTGACCGGGTTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>504 376 120</canonical_bands>
                <polymorphic_bands>624 376</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGAGGTATAACCGTCTCTTC</pcr_primer_p1>
		<pcr_primer_p2>TGAACTAACCCCACAGAATATAA</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>TGAGAGGTATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTTCA</canonical_amplicon>
		<polymorphic_amplicon>TGAGAGGTATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGYAAAAAAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24622</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>64422</contig_pos>
        <strand>+</strand>
        <context>TCGAGYAAAA[A/C]WAGTTATCGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAA</left_flank>
        <right_flank>AAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAGCGAGATAAATTGAGTAGGAGTAACGGTTTAACTTTTCTAGCGATTTTGTGATTTCACAATTAGATTTTTTCATAGTATTGAATCGAATGCTACTGTGAAACAATAATTTTTAAACAGTTATTGAACTATTTGAAACAGGAAAAACAGAATTTTTTCTGGTCCAACAAGTTTGAATGTTTAGTTTCTCTTTCTTGTTTTAGTTATCTACCGAAAGGTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCAAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTTCAAACTGGAAAGTCACCATGGAGGAACCCAACGATTTTCTTCGTCGAATTTTGGATAATCTTTACCAGAAAGCCACTGTAGCACCCAATAATGATGATGAACACGGAGCGATAGGTAGGTACCAAGTATTTAGAAACCGTTAATTTTATAAGGACCTTACAAATTAGGGGTTCCAAAAAATTTAGAGGAACACAAAGAGACCCTTAAAGCAACTTATGGGATGTGGAAAATATGAACCTTGGCCATTTTTCAATTTTTGTACCTCATTTTTTTGTTCCCTTTTTTGACCGGGTTCTTCTAAA</canonical>
            <polymorphic>GGAAGCGAGATAAATTGAGTAGGAGTAACGGTTTAACTTTTCTAGCGATTTTGTGATTTCACAATTAGATTTTTTCATAGTATTGAATCGAATGCTACTGTGAAACAATAATTTTTAAACAGTTATTGAACTATTTGAAACAGGAAAAACAGAATTTTTTCTGGTCCAACAAGTTTGAATGTTTAGTTTCTCTTTCTTGTTTTAGTTATCTACCGAAAGGTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCAAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAMAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTTCAAACTGGAAAGTCACCATGGAGGAACCCAACGATTTTCTTCGTCGAATTTTGGATAATCTTTACCAGAAAGCCACTGTAGCACCCAATAATGATGATGAACACGGAGCGATAGGTAGGTACCAAGTATTTAGAAACCGTTAATTTTATAAGGACCTTACAAATTAGGGGTTCCAAAAAATTTAGAGGAACACAAAGAGACCCTTAAAGCAACTTATGGGATGTGGAAAATATGAACCTTGGCCATTTTTCAATTTTTGTACCTCATTTTTTTGTTCCCTTTTTTGACCGGGTTCTTCTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTATAACCGTCTCTTCTGATTT</pcr_primer_p1>
		<pcr_primer_p2>AACTAACCCCACAGAATATAAGG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGTATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTT</canonical_amplicon>
		<polymorphic_amplicon>GGTATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAMAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24623</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>64575</contig_pos>
        <strand>+</strand>
        <context>TTTAGATCAC[A/T]TTTTTTCCMT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCAC</left_flank>
        <right_flank>TTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTTCAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTCTGGTCCAACAAGTTTGAATGTTTAGTTTCTCTTTCTTGTTTTAGTTATCTACCGAAAGGTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCAAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTTCAAACTGGAAAGTCACCATGGAGGAACCCAACGATTTTCTTCGTCGAATTTTGGATAATCTTTACCAGAAAGCCACTGTAGCACCCAATAATGATGATGAACACGGAGCGATAGGTAGGTACCAAGTATTTAGAAACCGTTAATTTTATAAGGACCTTACAAATTAGGGGTTCCAAAAAATTTAGAGGAACACAAAGAGACCCTTAAAGCAACTTATGGGATGTGGAAAATATGAACCTTGGCCATTTTTCAATTTTTGTACCTCATTTTTTTGTTCCCTTTTTTGACCGGGTTCTTCTAAATCCCCTTACTTTAGTGGACCCTAGAGATCGTTAATATAAAATACAAAAAAAGTTGTGTCAAAATAAAGATTAATATGACCAGGGCTGTCGGAAACAGAGCCACGGATTTTCCCTTACGGCCTTTACGTCCGCCTAACAATTAGAAGTTAAAAA</canonical>
            <polymorphic>ATTTTTTCTGGTCCAACAAGTTTGAATGTTTAGTTTCTCTTTCTTGTTTTAGTTATCTACCGAAAGGTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCAAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACWTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTTCAAACTGGAAAGTCACCATGGAGGAACCCAACGATTTTCTTCGTCGAATTTTGGATAATCTTTACCAGAAAGCCACTGTAGCACCCAATAATGATGATGAACACGGAGCGATAGGTAGGTACCAAGTATTTAGAAACCGTTAATTTTATAAGGACCTTACAAATTAGGGGTTCCAAAAAATTTAGAGGAACACAAAGAGACCCTTAAAGCAACTTATGGGATGTGGAAAATATGAACCTTGGCCATTTTTCAATTTTTGTACCTCATTTTTTTGTTCCCTTTTTTGACCGGGTTCTTCTAAATCCCCTTACTTTAGTGGACCCTAGAGATCGTTAATATAAAATACAAAAAAAGTTGTGTCAAAATAAAGATTAATATGACCAGGGCTGTCGGAAACAGAGCCACGGATTTTCCCTTACGGCCTTTACGTCCGCCTAACAATTAGAAGTTAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGAAAGCAATTCAACTTATAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTAACGGTTTCTAAATACTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTTCAAACTGGAAAGTCACCATGGAGGAACCCAACGATTTTCTTCGTCGAATTTTGGATAATCTTTACCAGAAAGCCACTGTAGCACCCAATAATGATGATGAACACGGAGCGATAGGTAGGTACCAAGTATTTAGAAACCGTTAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACWTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTTCAAACTGGAAAGTCACCATGGAGGAACCCAACGATTTTCTTCGTCGAATTTTGGATAATCTTTACCAGAAAGCCACTGTAGCACCCAATAATGATGATGAACACGGAGCGATAGGTAGGTACCAAGTATTTAGAAACCGTTAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24624</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>64584</contig_pos>
        <strand>+</strand>
        <context>CWTTTTTTCC[A/C]TATTTAGCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCC</left_flank>
        <right_flank>TATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTTCAAACTGGAAAGTC</right_flank>
        <qual_score>130</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTCCAACAAGTTTGAATGTTTAGTTTCTCTTTCTTGTTTTAGTTATCTACCGAAAGGTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCAAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTTCAAACTGGAAAGTCACCATGGAGGAACCCAACGATTTTCTTCGTCGAATTTTGGATAATCTTTACCAGAAAGCCACTGTAGCACCCAATAATGATGATGAACACGGAGCGATAGGTAGGTACCAAGTATTTAGAAACCGTTAATTTTATAAGGACCTTACAAATTAGGGGTTCCAAAAAATTTAGAGGAACACAAAGAGACCCTTAAAGCAACTTATGGGATGTGGAAAATATGAACCTTGGCCATTTTTCAATTTTTGTACCTCATTTTTTTGTTCCCTTTTTTGACCGGGTTCTTCTAAATCCCCTTACTTTAGTGGACCCTAGAGATCGTTAATATAAAATACAAAAAAAGTTGTGTCAAAATAAAGATTAATATGACCAGGGCTGTCGGAAACAGAGCCACGGATTTTCCCTTACGGCCTTTACGTCCGCCTAACAATTAGAAGTTAAAAAAAGAAACCT</canonical>
            <polymorphic>GGTCCAACAAGTTTGAATGTTTAGTTTCTCTTTCTTGTTTTAGTTATCTACCGAAAGGTTTTCCAAAATTATTCATCAAATCTGTTTTTCATTTCAGAAAGCGGACTTCTCCTCCTGGGTATCTCTTGTCTTTTCCGAGGAATCTGAAAAAAAAATTGACGGATCTGCTGTTCTCAGATTTGCCTTCGGTATGCCACTGAAGAAATATCTGGAACTTGGTGAAGTGCACTTTTCACGCCTTCAAAGTGAAGCGAGGAAAATCGTGGAAATTTACCAAGCTGAGAGGTATAACCGTCTCTTCTGATTTGAAATCAAATATCCACACCTTCGAGAAAAAAAAGTTATCGGAGATATTCGATTTGTTCTAATAATTGAATGTAGCAAAAATAAAATAACTTGTTAAAAATTTTTGTTGTTGATGTTCCAACCGATTGTTTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCMTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTTCAAACTGGAAAGTCACCATGGAGGAACCCAACGATTTTCTTCGTCGAATTTTGGATAATCTTTACCAGAAAGCCACTGTAGCACCCAATAATGATGATGAACACGGAGCGATAGGTAGGTACCAAGTATTTAGAAACCGTTAATTTTATAAGGACCTTACAAATTAGGGGTTCCAAAAAATTTAGAGGAACACAAAGAGACCCTTAAAGCAACTTATGGGATGTGGAAAATATGAACCTTGGCCATTTTTCAATTTTTGTACCTCATTTTTTTGTTCCCTTTTTTGACCGGGTTCTTCTAAATCCCCTTACTTTAGTGGACCCTAGAGATCGTTAATATAAAATACAAAAAAAGTTGTGTCAAAATAAAGATTAATATGACCAGGGCTGTCGGAAACAGAGCCACGGATTTTCCCTTACGGCCTTTACGTCCGCCTAACAATTAGAAGTTAAAAAAAGAAACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGAAAGCAATTCAACTTATAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTAACGGTTTCTAAATACTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCCTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTTCAAACTGGAAAGTCACCATGGAGGAACCCAACGATTTTCTTCGTCGAATTTTGGATAATCTTTACCAGAAAGCCACTGTAGCACCCAATAATGATGATGAACACGGAGCGATAGGTAGGTACCAAGTATTTAGAAACCGTTAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTCGAAAGCAATTCAACTTATACTTGTTCTATGATTTGTGATTCTTTTAGATCACTTTTTTTCCMTATTTAGCTAGAACCTTATATTCTGTGGGGTTAGTTCAAACTGGAAAGTCACCATGGAGGAACCCAACGATTTTCTTCGTCGAATTTTGGATAATCTTTACCAGAAAGCCACTGTAGCACCCAATAATGATGATGAACACGGAGCGATAGGTAGGTACCAAGTATTTAGAAACCGTTAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24625</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>218897</contig_pos>
        <strand>+</strand>
        <context>ACTGATTAGA[A/T]ACTTGCAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGAAAATGTAGATCTATGAAAGTAACTCCTGAGAACAAAACTGATTAGA</left_flank>
        <right_flank>ACTTGCAAAATTATCAGTTTCCGAATTTTGAAAAAGTTCAAACAATACAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTTTATTATAAGAATGATTTCCAGCCTGTTTGCCGCGCCTCCAGTGCTTCAAACAGTTGGCTGGTGCGCCTTCAGTAGTGACTTTTTGGCATTTGAAAATCTTGACCCATTTCAAATGTCCAAAAACCAGTAACGTGCTAAAAAACTTGTTTCAGATGTTTTGTAATACTGAAATTTTTTAATGGCCATTTGGTTATTTTGGTTTCCTGGATAACGTAGTTTTCAGACAAGCTGGGACATCAGAACAGTCGTAGCTCAGTGGCACAGTGCTTTTCTTACTTCGTCCATAAGTTCAACTTCACTTGTGGCTTCTCTAAACAGGAGAAACTTTCAAAAATGTTCCACCATCTTCAAAATTCAGGAATATTTCATAGCATGAAGAAAGTTGGAAAATATTTGCGAATTAGTTCATGGAGATTTTTTTATACTTGGGACATAATTGAACCTTGAAAATGTAGATCTATGAAAGTAACTCCTGAGAACAAAACTGATTAGAAACTTGCAAAATTATCAGTTTCCGAATTTTGAAAAAGTTCAAACAATACAGTAATACCCAGATGATTGAAACTTACCGTAAATTGGCTTCCTGGTTTATCTCAATTTTTCAAAAATTTCGTCCTTCCAAAAATTCATATTCCATAGACACCATTTCAGAAGGTCCTTGATAATCGTTGTATTGATTAGAAAAGAATAGTGGTTTCTATAAGTCATTAAGTATGAAGTAAATTTTAATAATTTGTTGTAAGATAATAATAATATTCAATCAAGATTGTGATTCAGTGCTATCATTATGTATGGAGTGGATTCCAATAATTTAGCAGCAATAAGTAACAGGTAGTTAACACTTTGAAGGTAGAGTTTTAGGAGTTTTCTTTGGAGAGTACGATTTTTTCGTGACGACGTATAGTGATTGTATTCACACTTTTCGGGGTTACCGTAGTGCTCTCATATACCCCATAACTCGCAATCAGGCCTTTGCCACCGCGTAGCTTAGTTG</canonical>
            <polymorphic>TTTCTTTATTATAAGAATGATTTCCAGCCTGTTTGCCGCGCCTCCAGTGCTTCAAACAGTTGGCTGGTGCGCCTTCAGTAGTGACTTTTTGGCATTTGAAAATCTTGACCCATTTCAAATGTCCAAAAACCAGTAACGTGCTAAAAAACTTGTTTCAGATGTTTTGTAATACTGAAATTTTTTAATGGCCATTTGGTTATTTTGGTTTCCTGGATAACGTAGTTTTCAGACAAGCTGGGACATCAGAACAGTCGTAGCTCAGTGGCACAGTGCTTTTCTTACTTCGTCCATAAGTTCAACTTCACTTGTGGCTTCTCTAAACAGGAGAAACTTTCAAAAATGTTCCACCATCTTCAAAATTCAGGAATATTTCATAGCATGAAGAAAGTTGGAAAATATTTGCGAATTAGTTCATGGAGATTTTTTTATACTTGGGACATAATTGAACCTTGAAAATGTAGATCTATGAAAGTAACTCCTGAGAACAAAACTGATTAGAWACTTGCAAAATTATCAGTTTCCGAATTTTGAAAAAGTTCAAACAATACAGTAATACCCAGATGATTGAAACTTACCGTAAATTGGCTTCCTGGTTTATCTCAATTTTTCAAAAATTTCGTCCTTCCAAAAATTCATATTCCATAGACACCATTTCAGAAGGTCCTTGATAATCGTTGTATTGATTAGAAAAGAATAGTGGTTTCTATAAGTCATTAAGTATGAAGTAAATTTTAATAATTTGTTGTAAGATAATAATAATATTCAATCAAGATTGTGATTCAGTGCTATCATTATGTATGGAGTGGATTCCAATAATTTAGCAGCAATAAGTAACAGGTAGTTAACACTTTGAAGGTAGAGTTTTAGGAGTTTTCTTTGGAGAGTACGATTTTTTCGTGACGACGTATAGTGATTGTATTCACACTTTTCGGGGTTACCGTAGTGCTCTCATATACCCCATAACTCGCAATCAGGCCTTTGCCACCGCGTAGCTTAGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAACAGGAGAAACTTTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCAATCATCTGGGTATTACTGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAAACAGGAGAAACTTTCAAAAATGTTCCACCATCTTCAAAATTCAGGAATATTTCATAGCATGAAGAAAGTTGGAAAATATTTGCGAATTAGTTCATGGAGATTTTTTTATACTTGGGACATAATTGAACCTTGAAAATGTAGATCTATGAAAGTAACTCCTGAGAACAAAACTGATTAGAAACTTGCAAAATTATCAGTTTCCGAATTTTGAAAAAGTTCAAACAATACAGTAATACCCAGATGATTGAA</canonical_amplicon>
		<polymorphic_amplicon>TAAACAGGAGAAACTTTCAAAAATGTTCCACCATCTTCAAAATTCAGGAATATTTCATAGCATGAAGAAAGTTGGAAAATATTTGCGAATTAGTTCATGGAGATTTTTTTATACTTGGGACATAATTGAACCTTGAAAATGTAGATCTATGAAAGTAACTCCTGAGAACAAAACTGATTAGAWACTTGCAAAATTATCAGTTTCCGAATTTTGAAAAAGTTCAAACAATACAGTAATACCCAGATGATTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24626</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>219884</contig_pos>
        <strand>+</strand>
        <context>CCTCTCTGGA[A/G]CACAGGCGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACATGAATGCTAGTGAACGTAACCTCCTTTATGGTCTCTCCTCTCTGGA</left_flank>
        <right_flank>CACAGGCGACAAACAATTGATAAAAAACTGATATCTAGAATAATGTTAGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTAGCTTAGTTGATAGCTGCGCGGCATCACCAATATCTAGCCCAAATGTTCAGTTCCTCGATAAGCTCGTTTTTATAGAATTTCTACGGAATTTCCGTCTCTTCAAAATGTTTTTCCTGTTTCTCATAGCTGTGAAAACATTACATTTTTGTAGTTGTTCGCTCCTCTGCCCACATGATCCTCATAAGACTCGTTCACTCGTTTTACTCGTTCACTCGTGTGATTATTTTGAATAGACAATAAATGCATTTTCCAATGACACATTCCCCCAAACATAACGATTTTTGCTCTTGTGACGTACAGAGATCCACAAATCCGGAAATTTTAACTATGTTGAATTCTTAACTATGTTGAATTCTGGAGCCCTAGCCAACATGGGTTCCTGCCAAAACGGTCGACTGTAACGAATATGTTAGAGGCTATGAATGATTCTCCACAAGACTCAGATTACATGAATGCTAGTGAACGTAACCTCCTTTATGGTCTCTCCTCTCTGGAGCACAGGCGACAAACAATTGATAAAAAACTGATATCTAGAATAATGTTAGGAAAAGTGGGTCTAAACCAGACTGACTTTTTCCAAGTGTCCACAAATAATCGAACAAGATCAAAAACAAGGTACAAATGGAAAAGAGCTAAAACAAAAATTAGGCAACACTTTTTCGTCAATAGGGCGCTTAGTAAAATGATTTAGTTACTGCTGAGCAATTGCTCAATTTCCTGGCCCTACTCTCTGTCCTCTATTCTATGTATTATTCTATGTTCATTTATGCTTGACATGTATTATTCTCCTCTCCCTATTTCTTTTTAATGGTCACTTTAGTTCTAGTTCATTCTATTAATTTACATTTCCTCTCACTAGAATTCATTATTTATTCATTTGGAATCTGCTTGTCATGTATTTTAAAGGGGGACTCCGACCAGAAATTTTTATTGCATCAAAATGTGTTAAAATTTATCTATTTTTCAAATATTATTGCGAAAAAATTCAAAGAAAAT</canonical>
            <polymorphic>CGTAGCTTAGTTGATAGCTGCGCGGCATCACCAATATCTAGCCCAAATGTTCAGTTCCTCGATAAGCTCGTTTTTATAGAATTTCTACGGAATTTCCGTCTCTTCAAAATGTTTTTCCTGTTTCTCATAGCTGTGAAAACATTACATTTTTGTAGTTGTTCGCTCCTCTGCCCACATGATCCTCATAAGACTCGTTCACTCGTTTTACTCGTTCACTCGTGTGATTATTTTGAATAGACAATAAATGCATTTTCCAATGACACATTCCCCCAAACATAACGATTTTTGCTCTTGTGACGTACAGAGATCCACAAATCCGGAAATTTTAACTATGTTGAATTCTTAACTATGTTGAATTCTGGAGCCCTAGCCAACATGGGTTCCTGCCAAAACGGTCGACTGTAACGAATATGTTAGAGGCTATGAATGATTCTCCACAAGACTCAGATTACATGAATGCTAGTGAACGTAACCTCCTTTATGGTCTCTCCTCTCTGGARCACAGGCGACAAACAATTGATAAAAAACTGATATCTAGAATAATGTTAGGAAAAGTGGGTCTAAACCAGACTGACTTTTTCCAAGTGTCCACAAATAATCGAACAAGATCAAAAACAAGGTACAAATGGAAAAGAGCTAAAACAAAAATTAGGCAACACTTTTTCGTCAATAGGGCGCTTAGTAAAATGATTTAGTTACTGCTGAGCAATTGCTCAATTTCCTGGCCCTACTCTCTGTCCTCTATTCTATGTATTATTCTATGTTCATTTATGCTTGACATGTATTATTCTCCTCTCCCTATTTCTTTTTAATGGTCACTTTAGTTCTAGTTCATTCTATTAATTTACATTTCCTCTCACTAGAATTCATTATTTATTCATTTGGAATCTGCTTGTCATGTATTTTAAAGGGGGACTCCGACCAGAAATTTTTATTGCATCAAAATGTGTTAAAATTTATCTATTTTTCAAATATTATTGCGAAAAAATTCAAAGAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>498 366 136</canonical_bands>
                <polymorphic_bands>634 366</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCCGGAAATTTTAACTATGT</pcr_primer_p1>
		<pcr_primer_p2>AGACCCACTTTTCCTAACATTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATCCGGAAATTTTAACTATGTTGAATTCTTAACTATGTTGAATTCTGGAGCCCTAGCCAACATGGGTTCCTGCCAAAACGGTCGACTGTAACGAATATGTTAGAGGCTATGAATGATTCTCCACAAGACTCAGATTACATGAATGCTAGTGAACGTAACCTCCTTTATGGTCTCTCCTCTCTGGAGCACAGGCGACAAACAATTGATAAAAAACTGATATCTAGAATAATGTTAGGAAAAGTGGGTCT</canonical_amplicon>
		<polymorphic_amplicon>AAATCCGGAAATTTTAACTATGTTGAATTCTTAACTATGTTGAATTCTGGAGCCCTAGCCAACATGGGTTCCTGCCAAAACGGTCGACTGTAACGAATATGTTAGAGGCTATGAATGATTCTCCACAAGACTCAGATTACATGAATGCTAGTGAACGTAACCTCCTTTATGGTCTCTCCTCTCTGGARCACAGGCGACAAACAATTGATAAAAAACTGATATCTAGAATAATGTTAGGAAAAGTGGGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24627</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>252263</contig_pos>
        <strand>+</strand>
        <context>TCTATCTATT[A/C]KAATAGATGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTGCTATTAATTTTAAGACGAAATCAAATATTTCTGTTTTCTATCTATT</left_flank>
        <right_flank>GAATAGATGTTCACTAATCCGAAAATGAGCAATTTTTGGTCTACACATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAGTCTGTGAGCCGCCAGTTGTGTTGATTTCCGAGGCAAAGCGGTAAAAAATATTTCAGACTTTCGCGTCTTTTTCGAAAGTTTAGTTTGGTTTTTGGTAGGAAAACAGACTCTAGAGATGCTAGAAAGCATGTTTTCCAAGAGAAACACGAAATTCGGTTCGAAAAATAAAAAGCTTTTTTTCAACTATTGAATTTGAACATAGCGGAAAAAATCCGATCAATGATAAAATTAACTTGGAACGGAACATTTTAGAAAAGTTGACGCTGATCTACACAGCTCGTAATCACATTTTCATTACCATCGAAAGTTAAGAAAGCCGAGAAACGGACATCCAAGGCTTAAATAAAACTTGGCTTTCGAAAATTGTTTTGAAAATTGTAGGCAATATATCATTTGAATCTTCTGAAAATAGTCATTCTGAAACTGTGATATTTTAATATTTCTTTGCTATTAATTTTAAGACGAAATCAAATATTTCTGTTTTCTATCTATTAGAATAGATGTTCACTAATCCGAAAATGAGCAATTTTTGGTCTACACATTAAGATTATAATCACGGTTAAAAAAATTTCTGCGAAGTGGATTATAGTAATCTGAAATTTTACAAAAAAAAAAGATCAAATCATCTTCCCAAAATGATGTTTTTCAAAATATATCTATCACGAAACATAACTTTTTGCGGTTCATAGAAAGTTCACATAAAAAACGTTAAACTGAAAATTGTAAAAGAAAGGATAAGTCTAGTTTCATGATATGCTGAAAATATAAAACCACCTACCTGAAATTTCTTTGATTTCTGTTTTTCAAGCTGTCATTCTAGGAAACTAAAATAATAATAATAAGTTTACTGTTTCATGTGGTGCTGAAAGTTTTAAAATATAAGTCAATTTCAGTTCAACATCGTATTCCAGTGAATCAATTGACTGTATCCAGTCAAAAATTCACGGCAAATACTCATTAGGTTGATGATCTCTTGCTAAATGCTCACTTGCTA</canonical>
            <polymorphic>TGAAAGTCTGTGAGCCGCCAGTTGTGTTGATTTCCGAGGCAAAGCGGTAAAAAATATTTCAGACTTTCGCGTCTTTTTCGAAAGTTTAGTTTGGTTTTTGGTAGGAAAACAGACTCTAGAGATGCTAGAAAGCATGTTTTCCAAGAGAAACACGAAATTCGGTTCGAAAAATAAAAAGCTTTTTTTCAACTATTGAATTTGAACATAGCGGAAAAAATCCGATCAATGATAAAATTAACTTGGAACGGAACATTTTAGAAAAGTTGACGCTGATCTACACAGCTCGTAATCACATTTTCATTACCATCGAAAGTTAAGAAAGCCGAGAAACGGACATCCAAGGCTTAAATAAAACTTGGCTTTCGAAAATTGTTTTGAAAATTGTAGGCAATATATCATTTGAATCTTCTGAAAATAGTCATTCTGAAACTGTGATATTTTAATATTTCTTTGCTATTAATTTTAAGACGAAATCAAATATTTCTGTTTTCTATCTATTMGAATAGATGTTCACTAATCCGAAAATGAGCAATTTTTGGTCTACACATTAAGATTATAATCACGGTTAAAAAAATTTCTGCGAAGTGGATTATAGTAATCTGAAATTTTACAAAAAAAAAAGATCAAATCATCTTCCCAAAATGATGTTTTTCAAAATATATCTATCACGAAACATAACTTTTTGCGGTTCATAGAAAGTTCACATAAAAAACGTTAAACTGAAAATTGTAAAAGAAAGGATAAGTCTAGTTTCATGATATGCTGAAAATATAAAACCACCTACCTGAAATTTCTTTGATTTCTGTTTTTCAAGCTGTCATTCTAGGAAACTAAAATAATAATAATAAGTTTACTGTTTCATGTGGTGCTGAAAGTTTTAAAATATAAGTCAATTTCAGTTCAACATCGTATTCCAGTGAATCAATTGACTGTATCCAGTCAAAAATTCACGGCAAATACTCATTAGGTTGATGATCTCTTGCTAAATGCTCACTTGCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTGAAAATAGTCATTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAACATCATTTTGGGAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTTCTGAAAATAGTCATTCTGAAACTGTGATATTTTAATATTTCTTTGCTATTAATTTTAAGACGAAATCAAATATTTCTGTTTTCTATCTATTAGAATAGATGTTCACTAATCCGAAAATGAGCAATTTTTGGTCTACACATTAAGATTATAATCACGGTTAAAAAAATTTCTGCGAAGTGGATTATAGTAATCTGAAATTTTACAAAAAAAAAAGATCAAATCATCTTCCCAAAATGATGTTTT</canonical_amplicon>
		<polymorphic_amplicon>CTTCTGAAAATAGTCATTCTGAAACTGTGATATTTTAATATTTCTTTGCTATTAATTTTAAGACGAAATCAAATATTTCTGTTTTCTATCTATTMGAATAGATGTTCACTAATCCGAAAATGAGCAATTTTTGGTCTACACATTAAGATTATAATCACGGTTAAAAAAATTTCTGCGAAGTGGATTATAGTAATCTGAAATTTTACAAAAAAAAAAGATCAAATCATCTTCCCAAAATGATGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24628</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>252264</contig_pos>
        <strand>+</strand>
        <context>CTATCTATTM[G/T]AATAGATGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGCTATTAATTTTAAGACGAAATCAAATATTTCTGTTTTCTATCTATTA</left_flank>
        <right_flank>AATAGATGTTCACTAATCCGAAAATGAGCAATTTTTGGTCTACACATTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAGTCTGTGAGCCGCCAGTTGTGTTGATTTCCGAGGCAAAGCGGTAAAAAATATTTCAGACTTTCGCGTCTTTTTCGAAAGTTTAGTTTGGTTTTTGGTAGGAAAACAGACTCTAGAGATGCTAGAAAGCATGTTTTCCAAGAGAAACACGAAATTCGGTTCGAAAAATAAAAAGCTTTTTTTCAACTATTGAATTTGAACATAGCGGAAAAAATCCGATCAATGATAAAATTAACTTGGAACGGAACATTTTAGAAAAGTTGACGCTGATCTACACAGCTCGTAATCACATTTTCATTACCATCGAAAGTTAAGAAAGCCGAGAAACGGACATCCAAGGCTTAAATAAAACTTGGCTTTCGAAAATTGTTTTGAAAATTGTAGGCAATATATCATTTGAATCTTCTGAAAATAGTCATTCTGAAACTGTGATATTTTAATATTTCTTTGCTATTAATTTTAAGACGAAATCAAATATTTCTGTTTTCTATCTATTAGAATAGATGTTCACTAATCCGAAAATGAGCAATTTTTGGTCTACACATTAAGATTATAATCACGGTTAAAAAAATTTCTGCGAAGTGGATTATAGTAATCTGAAATTTTACAAAAAAAAAAGATCAAATCATCTTCCCAAAATGATGTTTTTCAAAATATATCTATCACGAAACATAACTTTTTGCGGTTCATAGAAAGTTCACATAAAAAACGTTAAACTGAAAATTGTAAAAGAAAGGATAAGTCTAGTTTCATGATATGCTGAAAATATAAAACCACCTACCTGAAATTTCTTTGATTTCTGTTTTTCAAGCTGTCATTCTAGGAAACTAAAATAATAATAATAAGTTTACTGTTTCATGTGGTGCTGAAAGTTTTAAAATATAAGTCAATTTCAGTTCAACATCGTATTCCAGTGAATCAATTGACTGTATCCAGTCAAAAATTCACGGCAAATACTCATTAGGTTGATGATCTCTTGCTAAATGCTCACTTGCTAA</canonical>
            <polymorphic>GAAAGTCTGTGAGCCGCCAGTTGTGTTGATTTCCGAGGCAAAGCGGTAAAAAATATTTCAGACTTTCGCGTCTTTTTCGAAAGTTTAGTTTGGTTTTTGGTAGGAAAACAGACTCTAGAGATGCTAGAAAGCATGTTTTCCAAGAGAAACACGAAATTCGGTTCGAAAAATAAAAAGCTTTTTTTCAACTATTGAATTTGAACATAGCGGAAAAAATCCGATCAATGATAAAATTAACTTGGAACGGAACATTTTAGAAAAGTTGACGCTGATCTACACAGCTCGTAATCACATTTTCATTACCATCGAAAGTTAAGAAAGCCGAGAAACGGACATCCAAGGCTTAAATAAAACTTGGCTTTCGAAAATTGTTTTGAAAATTGTAGGCAATATATCATTTGAATCTTCTGAAAATAGTCATTCTGAAACTGTGATATTTTAATATTTCTTTGCTATTAATTTTAAGACGAAATCAAATATTTCTGTTTTCTATCTATTAKAATAGATGTTCACTAATCCGAAAATGAGCAATTTTTGGTCTACACATTAAGATTATAATCACGGTTAAAAAAATTTCTGCGAAGTGGATTATAGTAATCTGAAATTTTACAAAAAAAAAAGATCAAATCATCTTCCCAAAATGATGTTTTTCAAAATATATCTATCACGAAACATAACTTTTTGCGGTTCATAGAAAGTTCACATAAAAAACGTTAAACTGAAAATTGTAAAAGAAAGGATAAGTCTAGTTTCATGATATGCTGAAAATATAAAACCACCTACCTGAAATTTCTTTGATTTCTGTTTTTCAAGCTGTCATTCTAGGAAACTAAAATAATAATAATAAGTTTACTGTTTCATGTGGTGCTGAAAGTTTTAAAATATAAGTCAATTTCAGTTCAACATCGTATTCCAGTGAATCAATTGACTGTATCCAGTCAAAAATTCACGGCAAATACTCATTAGGTTGATGATCTCTTGCTAAATGCTCACTTGCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTGAAAATAGTCATTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAACATCATTTTGGGAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTTCTGAAAATAGTCATTCTGAAACTGTGATATTTTAATATTTCTTTGCTATTAATTTTAAGACGAAATCAAATATTTCTGTTTTCTATCTATTAGAATAGATGTTCACTAATCCGAAAATGAGCAATTTTTGGTCTACACATTAAGATTATAATCACGGTTAAAAAAATTTCTGCGAAGTGGATTATAGTAATCTGAAATTTTACAAAAAAAAAAGATCAAATCATCTTCCCAAAATGATGTTTT</canonical_amplicon>
		<polymorphic_amplicon>CTTCTGAAAATAGTCATTCTGAAACTGTGATATTTTAATATTTCTTTGCTATTAATTTTAAGACGAAATCAAATATTTCTGTTTTCTATCTATTAKAATAGATGTTCACTAATCCGAAAATGAGCAATTTTTGGTCTACACATTAAGATTATAATCACGGTTAAAAAAATTTCTGCGAAGTGGATTATAGTAATCTGAAATTTTACAAAAAAAAAAGATCAAATCATCTTCCCAAAATGATGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24629</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>252574</contig_pos>
        <strand>+</strand>
        <context>TTCTGTTTTT[A/C]AAGCTGTCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCTGAAAATATAAAACCACCTACCTGAAATTTCTTTGATTTCTGTTTTT</left_flank>
        <right_flank>AAGCTGTCATTCTAGGAAACTAAAATAATAATAATAAGTTTACTGTTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTAAGAAAGCCGAGAAACGGACATCCAAGGCTTAAATAAAACTTGGCTTTCGAAAATTGTTTTGAAAATTGTAGGCAATATATCATTTGAATCTTCTGAAAATAGTCATTCTGAAACTGTGATATTTTAATATTTCTTTGCTATTAATTTTAAGACGAAATCAAATATTTCTGTTTTCTATCTATTAGAATAGATGTTCACTAATCCGAAAATGAGCAATTTTTGGTCTACACATTAAGATTATAATCACGGTTAAAAAAATTTCTGCGAAGTGGATTATAGTAATCTGAAATTTTACAAAAAAAAAAGATCAAATCATCTTCCCAAAATGATGTTTTTCAAAATATATCTATCACGAAACATAACTTTTTGCGGTTCATAGAAAGTTCACATAAAAAACGTTAAACTGAAAATTGTAAAAGAAAGGATAAGTCTAGTTTCATGATATGCTGAAAATATAAAACCACCTACCTGAAATTTCTTTGATTTCTGTTTTTCAAGCTGTCATTCTAGGAAACTAAAATAATAATAATAAGTTTACTGTTTCATGTGGTGCTGAAAGTTTTAAAATATAAGTCAATTTCAGTTCAACATCGTATTCCAGTGAATCAATTGACTGTATCCAGTCAAAAATTCACGGCAAATACTCATTAGGTTGATGATCTCTTGCTAAATGCTCACTTGCTAAATATGCTCATCTGCTAAACTCGCTCATTTGCTAAAATAGTCACACTTGCTAAATTTCATTTGCTAAATTTTGATCATTCGCTAAAAATGAAAAAGTGGAAATTTTGCTGTTATTTGCTAATTTCAGTACTTTTTGACTGAATTTTTTACAGAATATTCCGGTTTTTGCTTTAAATTTCAGGCTTAGGCTTTAACACCTGTTTTCCTGTAAAAAGTTTCAGCCTAAGCCTTCAATTTGAACAAGTCCCCTATTTAGCAAATGATCAAAATTTAGCAAATGAAATTTAGCAAGTGTGACTATTTTAGCAAAT</canonical>
            <polymorphic>AGTTAAGAAAGCCGAGAAACGGACATCCAAGGCTTAAATAAAACTTGGCTTTCGAAAATTGTTTTGAAAATTGTAGGCAATATATCATTTGAATCTTCTGAAAATAGTCATTCTGAAACTGTGATATTTTAATATTTCTTTGCTATTAATTTTAAGACGAAATCAAATATTTCTGTTTTCTATCTATTAGAATAGATGTTCACTAATCCGAAAATGAGCAATTTTTGGTCTACACATTAAGATTATAATCACGGTTAAAAAAATTTCTGCGAAGTGGATTATAGTAATCTGAAATTTTACAAAAAAAAAAGATCAAATCATCTTCCCAAAATGATGTTTTTCAAAATATATCTATCACGAAACATAACTTTTTGCGGTTCATAGAAAGTTCACATAAAAAACGTTAAACTGAAAATTGTAAAAGAAAGGATAAGTCTAGTTTCATGATATGCTGAAAATATAAAACCACCTACCTGAAATTTCTTTGATTTCTGTTTTTMAAGCTGTCATTCTAGGAAACTAAAATAATAATAATAAGTTTACTGTTTCATGTGGTGCTGAAAGTTTTAAAATATAAGTCAATTTCAGTTCAACATCGTATTCCAGTGAATCAATTGACTGTATCCAGTCAAAAATTCACGGCAAATACTCATTAGGTTGATGATCTCTTGCTAAATGCTCACTTGCTAAATATGCTCATCTGCTAAACTCGCTCATTTGCTAAAATAGTCACACTTGCTAAATTTCATTTGCTAAATTTTGATCATTCGCTAAAAATGAAAAAGTGGAAATTTTGCTGTTATTTGCTAATTTCAGTACTTTTTGACTGAATTTTTTACAGAATATTCCGGTTTTTGCTTTAAATTTCAGGCTTAGGCTTTAACACCTGTTTTCCTGTAAAAAGTTTCAGCCTAAGCCTTCAATTTGAACAAGTCCCCTATTTAGCAAATGATCAAAATTTAGCAAATGAAATTTAGCAAGTGTGACTATTTTAGCAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAACTTTTTGCGGTTCATAGA</pcr_primer_p1>
		<pcr_primer_p2>TGATTCACTGGAATACGATGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAACTTTTTGCGGTTCATAGAAAGTTCACATAAAAAACGTTAAACTGAAAATTGTAAAAGAAAGGATAAGTCTAGTTTCATGATATGCTGAAAATATAAAACCACCTACCTGAAATTTCTTTGATTTCTGTTTTTCAAGCTGTCATTCTAGGAAACTAAAATAATAATAATAAGTTTACTGTTTCATGTGGTGCTGAAAGTTTTAAAATATAAGTCAATTTCAGTTCAACATCGTATTCCAGTGAATCA</canonical_amplicon>
		<polymorphic_amplicon>ATAACTTTTTGCGGTTCATAGAAAGTTCACATAAAAAACGTTAAACTGAAAATTGTAAAAGAAAGGATAAGTCTAGTTTCATGATATGCTGAAAATATAAAACCACCTACCTGAAATTTCTTTGATTTCTGTTTTTMAAGCTGTCATTCTAGGAAACTAAAATAATAATAATAAGTTTACTGTTTCATGTGGTGCTGAAAGTTTTAAAATATAAGTCAATTTCAGTTCAACATCGTATTCCAGTGAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24630</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>252596</contig_pos>
        <strand>+</strand>
        <context>CTAGGAAACT[A/C]AAATAATAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACCTGAAATTTCTTTGATTTCTGTTTTTCAAGCTGTCATTCTAGGAAACT</left_flank>
        <right_flank>AAATAATAATAATAAGTTTACTGTTTCATGTGGTGCTGAAAGTTTTAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATCCAAGGCTTAAATAAAACTTGGCTTTCGAAAATTGTTTTGAAAATTGTAGGCAATATATCATTTGAATCTTCTGAAAATAGTCATTCTGAAACTGTGATATTTTAATATTTCTTTGCTATTAATTTTAAGACGAAATCAAATATTTCTGTTTTCTATCTATTAGAATAGATGTTCACTAATCCGAAAATGAGCAATTTTTGGTCTACACATTAAGATTATAATCACGGTTAAAAAAATTTCTGCGAAGTGGATTATAGTAATCTGAAATTTTACAAAAAAAAAAGATCAAATCATCTTCCCAAAATGATGTTTTTCAAAATATATCTATCACGAAACATAACTTTTTGCGGTTCATAGAAAGTTCACATAAAAAACGTTAAACTGAAAATTGTAAAAGAAAGGATAAGTCTAGTTTCATGATATGCTGAAAATATAAAACCACCTACCTGAAATTTCTTTGATTTCTGTTTTTCAAGCTGTCATTCTAGGAAACTAAAATAATAATAATAAGTTTACTGTTTCATGTGGTGCTGAAAGTTTTAAAATATAAGTCAATTTCAGTTCAACATCGTATTCCAGTGAATCAATTGACTGTATCCAGTCAAAAATTCACGGCAAATACTCATTAGGTTGATGATCTCTTGCTAAATGCTCACTTGCTAAATATGCTCATCTGCTAAACTCGCTCATTTGCTAAAATAGTCACACTTGCTAAATTTCATTTGCTAAATTTTGATCATTCGCTAAAAATGAAAAAGTGGAAATTTTGCTGTTATTTGCTAATTTCAGTACTTTTTGACTGAATTTTTTACAGAATATTCCGGTTTTTGCTTTAAATTTCAGGCTTAGGCTTTAACACCTGTTTTCCTGTAAAAAGTTTCAGCCTAAGCCTTCAATTTGAACAAGTCCCCTATTTAGCAAATGATCAAAATTTAGCAAATGAAATTTAGCAAGTGTGACTATTTTAGCAAATGTGAGCGAGTTTAGCTCATGAG</canonical>
            <polymorphic>ACATCCAAGGCTTAAATAAAACTTGGCTTTCGAAAATTGTTTTGAAAATTGTAGGCAATATATCATTTGAATCTTCTGAAAATAGTCATTCTGAAACTGTGATATTTTAATATTTCTTTGCTATTAATTTTAAGACGAAATCAAATATTTCTGTTTTCTATCTATTAGAATAGATGTTCACTAATCCGAAAATGAGCAATTTTTGGTCTACACATTAAGATTATAATCACGGTTAAAAAAATTTCTGCGAAGTGGATTATAGTAATCTGAAATTTTACAAAAAAAAAAGATCAAATCATCTTCCCAAAATGATGTTTTTCAAAATATATCTATCACGAAACATAACTTTTTGCGGTTCATAGAAAGTTCACATAAAAAACGTTAAACTGAAAATTGTAAAAGAAAGGATAAGTCTAGTTTCATGATATGCTGAAAATATAAAACCACCTACCTGAAATTTCTTTGATTTCTGTTTTTCAAGCTGTCATTCTAGGAAACTMAAATAATAATAATAAGTTTACTGTTTCATGTGGTGCTGAAAGTTTTAAAATATAAGTCAATTTCAGTTCAACATCGTATTCCAGTGAATCAATTGACTGTATCCAGTCAAAAATTCACGGCAAATACTCATTAGGTTGATGATCTCTTGCTAAATGCTCACTTGCTAAATATGCTCATCTGCTAAACTCGCTCATTTGCTAAAATAGTCACACTTGCTAAATTTCATTTGCTAAATTTTGATCATTCGCTAAAAATGAAAAAGTGGAAATTTTGCTGTTATTTGCTAATTTCAGTACTTTTTGACTGAATTTTTTACAGAATATTCCGGTTTTTGCTTTAAATTTCAGGCTTAGGCTTTAACACCTGTTTTCCTGTAAAAAGTTTCAGCCTAAGCCTTCAATTTGAACAAGTCCCCTATTTAGCAAATGATCAAAATTTAGCAAATGAAATTTAGCAAGTGTGACTATTTTAGCAAATGTGAGCGAGTTTAGCTCATGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAACTTTTTGCGGTTCATAGA</pcr_primer_p1>
		<pcr_primer_p2>TGATTCACTGGAATACGATGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAACTTTTTGCGGTTCATAGAAAGTTCACATAAAAAACGTTAAACTGAAAATTGTAAAAGAAAGGATAAGTCTAGTTTCATGATATGCTGAAAATATAAAACCACCTACCTGAAATTTCTTTGATTTCTGTTTTTCAAGCTGTCATTCTAGGAAACTAAAATAATAATAATAAGTTTACTGTTTCATGTGGTGCTGAAAGTTTTAAAATATAAGTCAATTTCAGTTCAACATCGTATTCCAGTGAATCA</canonical_amplicon>
		<polymorphic_amplicon>ATAACTTTTTGCGGTTCATAGAAAGTTCACATAAAAAACGTTAAACTGAAAATTGTAAAAGAAAGGATAAGTCTAGTTTCATGATATGCTGAAAATATAAAACCACCTACCTGAAATTTCTTTGATTTCTGTTTTTCAAGCTGTCATTCTAGGAAACTMAAATAATAATAATAAGTTTACTGTTTCATGTGGTGCTGAAAGTTTTAAAATATAAGTCAATTTCAGTTCAACATCGTATTCCAGTGAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24631</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>253907</contig_pos>
        <strand>+</strand>
        <context>TAAAACTAAT[G/T]TTTTTTTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATAAATGAAATAATTCTTACATTTTTTTGGAAATCATTGTAAAACTAAT</left_flank>
        <right_flank>TTTTTTTGAAATTCGCATCTTTTGTAGAAATTTGGAAAATCAAAATATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAAATGTAAACCTATGACTTGTTTTTTGACCCAGTTTAACCATATACTTGTGTTCCAAATTTTCGAAATTTCGAAACAGAAAACATTCATTTGATTCCTCCCAGGAATAAAAAAAAAGTTCCTTTATGAACAAATCACGTTTTTCAGATTTTCTTATCACTAACCAAACTGTTTTACAAACCTAATAAAAATTCCTCATAATAATGTACTTTTGTGGTTTAACTTATGACGATAATTGAACAAATAAATGTTGTAGTTTCTGAAACTTGAGAAGTTTGGCATTTAATAGAACATAATAATACGTAGGTGAATTCTTACCATACAAATATCACAGTTAGCGTTCGAAATCGGGACGCCCGCTTTCGCTGGGCGACCCATTTTAGGGGACGGGGGACGGTCGTCCTCAGCCCTTTTTTCGGGGACAGTACCAAATCACTAACATAGAGTCATAAATGAAATAATTCTTACATTTTTTTGGAAATCATTGTAAAACTAATTTTTTTTTGAAATTCGCATCTTTTGTAGAAATTTGGAAAATCAAAATATCTGTTTCATATTCGTTTTATTTTTGAAAACAACTTTTGAAAAAGATTAACTGTTACGTTTTTTCCAAAATTGCAAGCCAAAAGAAGAGTTTCAGCAAAAAATAATTCTCGGAAAATCCAAAAAAAAAAACATACAATTGTCACAAAAGGGACACAAATGTTTCCAATGGCAGCAAAAAGGTTGAAATTCGAAAAAGGTGTAACTTCATTGTAATCATTTTTTGAAAATTGCCATACATATGAAGCGACGAATCAAAATCAGAATTCACAGAAAATTAAAGTCAACATCTTGAAACAGGTATTTTTGGTAATTGAGAAAAAAAAAGGAATTTCAAATGTTCAGTAAACTCTGGATTAGTACTGGATCAGTGCGATCCAAGAGTGAAACAGAAAAAAAAACGTCTGACAAGCAAAACAAAACTAACTTCCAAAAACGGAATCCCATTTCCCATC</canonical>
            <polymorphic>TGAAAATGTAAACCTATGACTTGTTTTTTGACCCAGTTTAACCATATACTTGTGTTCCAAATTTTCGAAATTTCGAAACAGAAAACATTCATTTGATTCCTCCCAGGAATAAAAAAAAAGTTCCTTTATGAACAAATCACGTTTTTCAGATTTTCTTATCACTAACCAAACTGTTTTACAAACCTAATAAAAATTCCTCATAATAATGTACTTTTGTGGTTTAACTTATGACGATAATTGAACAAATAAATGTTGTAGTTTCTGAAACTTGAGAAGTTTGGCATTTAATAGAACATAATAATACGTAGGTGAATTCTTACCATACAAATATCACAGTTAGCGTTCGAAATCGGGACGCCCGCTTTCGCTGGGCGACCCATTTTAGGGGACGGGGGACGGTCGTCCTCAGCCCTTTTTTCGGGGACAGTACCAAATCACTAACATAGAGTCATAAATGAAATAATTCTTACATTTTTTTGGAAATCATTGTAAAACTAATKTTTTTTTGAAATTCGCATCTTTTGTAGAAATTTGGAAAATCAAAATATCTGTTTCATATTCGTTTTATTTTTGAAAACAACTTTTGAAAAAGATTAACTGTTACGTTTTTTCCAAAATTGCAAGCCAAAAGAAGAGTTTCAGCAAAAAATAATTCTCGGAAAATCCAAAAAAAAAAACATACAATTGTCACAAAAGGGACACAAATGTTTCCAATGGCAGCAAAAAGGTTGAAATTCGAAAAAGGTGTAACTTCATTGTAATCATTTTTTGAAAATTGCCATACATATGAAGCGACGAATCAAAATCAGAATTCACAGAAAATTAAAGTCAACATCTTGAAACAGGTATTTTTGGTAATTGAGAAAAAAAAAGGAATTTCAAATGTTCAGTAAACTCTGGATTAGTACTGGATCAGTGCGATCCAAGAGTGAAACAGAAAAAAAAACGTCTGACAAGCAAAACAAAACTAACTTCCAAAAACGGAATCCCATTTCCCATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>150 126 123 87 76 59 50 44 41 36 36 35 35 32 19 18 13 11 9</canonical_bands>
                <polymorphic_bands>150 126 123 87 76 59 50 48 44 41 36 36 35 32 19 18 11 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACCATACAAATATCACAGTTAGC</pcr_primer_p1>
		<pcr_primer_p2>AACGAATATGAAACAGATATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTACCATACAAATATCACAGTTAGCGTTCGAAATCGGGACGCCCGCTTTCGCTGGGCGACCCATTTTAGGGGACGGGGGACGGTCGTCCTCAGCCCTTTTTTCGGGGACAGTACCAAATCACTAACATAGAGTCATAAATGAAATAATTCTTACATTTTTTTGGAAATCATTGTAAAACTAATTTTTTTTTGAAATTCGCATCTTTTGTAGAAATTTGGAAAATCAAAATATCTGTTTCATATTCGTT</canonical_amplicon>
		<polymorphic_amplicon>TTACCATACAAATATCACAGTTAGCGTTCGAAATCGGGACGCCCGCTTTCGCTGGGCGACCCATTTTAGGGGACGGGGGACGGTCGTCCTCAGCCCTTTTTTCGGGGACAGTACCAAATCACTAACATAGAGTCATAAATGAAATAATTCTTACATTTTTTTGGAAATCATTGTAAAACTAATKTTTTTTTGAAATTCGCATCTTTTGTAGAAATTTGGAAAATCAAAATATCTGTTTCATATTCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24632</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>266706</contig_pos>
        <strand>-</strand>
        <context>TGCGAATTTC[A/T]AAAAAAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGAAACAGATATTTTGATTTTCCAAATTTCTACAAAAGATGCGAATTTC</left_flank>
        <right_flank>AAAAAAAATTAGTTTTACAATGATTTCCAAAAAAATGTAAGAATTATTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTCGCGCTGGAAATAAAAGACTCTGTAAAATTGAGACAAGAGAAGCTCCTTAAGGGTTTGGCCTCGTGGGCAAACAGATATTGAGCCACTATTAACTAAGCTGCGCGGTCACATGCTGGTTTGACAATATTATTCGTGCGGTTGTTCTCATTAGTTATCGATGGAAGGCTACCAGTCGCGCAGATGATTTTTAAAGGTGGAAAACAACATTCTAAAAAAATCGAAATTCAACATTCACTGTTCCAAGTAGGGTTGGCAACGGGGCTCCCGCTTTTACGCGGGAGCCCCGAAAGCGGGNNNNNNNNNNNCTTTTGTGACAATTGTATGTTTTTTTTTTTGGATTTTCCGAGAATTATTTTTTGCTGAAACTCTTCTTTTGGCTTGCAATTNTGGAAAAAACGTAACAGTTAATCTTTTTCAAAAGTTGTTTTCAAAAATAAAACGAATATGAAACAGATATTTTGATTTTCCAAATTTCTACAAAAGATGCGAATTTCAAAAAAAAATTAGTTTTACAATGATTTCCAAAAAAATGTAAGAATTATTTCATTTATGACTCTATGTTAGTGATTTGGTACTGTCCCCGAAAAAAGGGCTGAGGACGACCGTCCCCCGTCCCCTAAAATGGGTCGCCCAGCGAAAGCGGGNGTNCNGCCGCCCCGCCCCTGTCGAAAAACAACTTTGTTTAAAGAATTAGTAACCGAATTTTTTAGATTATTTTACGATTCAGGGTACCCAATTAGGCTACCCTGAAATTTTCAAGTCAATTGGTCCATTCAGTTACGCGCAATTACGCAAAGTATACCGCCTCCCGGGGAGGGGGCGTATCCCCGCCCCGCACCCGCGGGGCGGGGATCGCCTTTTTTCGCCCCCAAGCCAACCCTAGTTCCAAGAAATTGATATAAACTAGGTTAAATTACGCATTTCCATTTTCATTTATTTCGCCTCATTTCGGGTTAACAACCGCCTCTTTCCTGAAATTGATAGGATCTTTTTTC</canonical>
            <polymorphic>GTTTCGCGCTGGAAATAAAAGACTCTGTAAAATTGAGACAAGAGAAGCTCCTTAAGGGTTTGGCCTCGTGGGCAAACAGATATTGAGCCACTATTAACTAAGCTGCGCGGTCACATGCTGGTTTGACAATATTATTCGTGCGGTTGTTCTCATTAGTTATCGATGGAAGGCTACCAGTCGCGCAGATGATTTTTAAAGGTGGAAAACAACATTCTAAAAAAATCGAAATTCAACATTCACTGTTCCAAGTAGGGTTGGCAACGGGGCTCCCGCTTTTACGCGGGAGCCCCGAAAGCGGGNNNNNNNNNNNCTTTTGTGACAATTGTATGTTTTTTTTTTTGGATTTTCCGAGAATTATTTTTTGCTGAAACTCTTCTTTTGGCTTGCAATTNTGGAAAAAACGTAACAGTTAATCTTTTTCAAAAGTTGTTTTCAAAAATAAAACGAATATGAAACAGATATTTTGATTTTCCAAATTTCTACAAAAGATGCGAATTTCWAAAAAAAATTAGTTTTACAATGATTTCCAAAAAAATGTAAGAATTATTTCATTTATGACTCTATGTTAGTGATTTGGTACTGTCCCCGAAAAAAGGGCTGAGGACGACCGTCCCCCGTCCCCTAAAATGGGTCGCCCAGCGAAAGCGGGNGTNCNGCCGCCCCGCCCCTGTCGAAAAACAACTTTGTTTAAAGAATTAGTAACCGAATTTTTTAGATTATTTTACGATTCAGGGTACCCAATTAGGCTACCCTGAAATTTTCAAGTCAATTGGTCCATTCAGTTACGCGCAATTACGCAAAGTATACCGCCTCCCGGGGAGGGGGCGTATCCCCGCCCCGCACCCGCGGGGCGGGGATCGCCTTTTTTCGCCCCCAAGCCAACCCTAGTTCCAAGAAATTGATATAAACTAGGTTAAATTACGCATTTCCATTTTCATTTATTTCGCCTCATTTCGGGTTAACAACCGCCTCTTTCCTGAAATTGATAGGATCTTTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGGATTTTCCGAGAATTA</pcr_primer_p1>
		<pcr_primer_p2>GGACAGTACCAAATCACTAACAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTGGATTTTCCGAGAATTATTTTTTGCTGAAACTCTTCTTTTGGCTTGCAATTNTGGAAAAAACGTAACAGTTAATCTTTTTCAAAAGTTGTTTTCAAAAATAAAACGAATATGAAACAGATATTTTGATTTTCCAAATTTCTACAAAAGATGCGAATTTCAAAAAAAAATTAGTTTTACAATGATTTCCAAAAAAATGTAAGAATTATTTCATTTATGACTCTATGTTAGTGATTTGGTACTGTCC</canonical_amplicon>
		<polymorphic_amplicon>TTTGGATTTTCCGAGAATTATTTTTTGCTGAAACTCTTCTTTTGGCTTGCAATTNTGGAAAAAACGTAACAGTTAATCTTTTTCAAAAGTTGTTTTCAAAAATAAAACGAATATGAAACAGATATTTTGATTTTCCAAATTTCTACAAAAGATGCGAATTTCWAAAAAAAATTAGTTTTACAATGATTTCCAAAAAAATGTAAGAATTATTTCATTTATGACTCTATGTTAGTGATTTGGTACTGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24633</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>275507</contig_pos>
        <strand>+</strand>
        <context>cctacgcata[C/T]aataCGATGG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAAGTCGACCTCATCGATCTTCCGGATGCGTCAGGAGTTCCTACGCATA</left_flank>
        <right_flank>AATACGATGGCTCATCGATTGTGAGATTTTTTTTTTGTTGCTTCCAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGGCAGTCCTTGAAAAAATCAAAATTTGTCCCCTTGACTTTGTATCCAACCAATCAAGCAAGTATAACTCTTACATATTTCAATACAAATTAAAAAATTGAAAAAAAACGATCCTATCAATTTCAGGAAAGAGACGGTTGTAAACCCGAAATGAGGCATCTCCAGCGACCACGTCAACCAATGGAAGTCAGCTCGTGGAATCGATTTCAACTCGGATTCCAAGCTTCATATACGAGCCTGACGAGGATCTGACATTTGACAATTGGTACAACAGATATGGAGACGTCATCACCAAGGACGGATCAACTCTCACCGATGAGGCCAAAGCAAGGTTAGTTTTATCTAAACTCAACACAAAAGAGTATTCTCACTTTGCAAATCGTATCCTCCCGGAAGCTCCAAACTCCCTAAAGTTCGAGGACCTCATTCCGAAGCTCAAGGGGACATTCAAGTCGACCTCATCGATCTTCCGGATGCGTCAGGAGTTCCTACGCATAGAATACGATGGCTCATCGATTGTGAGATTTTTTTTTTGTTGCTTCCAATTTTTTTAACCGTTTCAGAAGCACATTTGAAGTTTATGCGTACAAGTACGAAAAATAAAATGAATTCAGGATAAAGTTGTTACAGTACATCTGAAGTATTCCAAAACAGTTAATTTTGAAGCCAACATAGTCGGAACAGCTTTTGGTGGCACTCTGAAGATCATATTTCATGAGTTTGAAACGGTGAACTGCTTTTTTCAAAAACATCATAAAGCTTGTATTAGAAGAGCTCTAGATTTTTTATCCATTCATCTTGGTTCCTGTAAAAAAAACTTTAAAAAGTGACCGTATTGCCTATACGGTTGAAAACTTTGAATGAAAATGACAAAAAAGCTACAAATTTATGTTCCAAAAATCTCATATAAATCATGTGTAATTTGAATTTTAAAAAATTTCTAAATTTCCAGTCAGAACCTCGAGCCAGAATTACAAATTCATTTCTCATATAAATCA</canonical>
            <polymorphic>TATGGCAGTCCTTGAAAAAATCAAAATTTGTCCCCTTGACTTTGTATCCAACCAATCAAGCAAGTATAACTCTTACATATTTCAATACAAATTAAAAAATTGAAAAAAAACGATCCTATCAATTTCAGGAAAGAGACGGTTGTAAACCCGAAATGAGGCATCTCCAGCGACCACGTCAACCAATGGAAGTCAGCTCGTGGAATCGATTTCAACTCGGATTCCAAGCTTCATATACGAGCCTGACGAGGATCTGACATTTGACAATTGGTACAACAGATATGGAGACGTCATCACCAAGGACGGATCAACTCTCACCGATGAGGCCAAAGCAAGGTTAGTTTTATCTAAACTCAACACAAAAGAGTATTCTCACTTTGCAAATCGTATCCTCCCGGAAGCTCCAAACTCCCTAAAGTTCGAGGACCTCATTCCGAAGCTCAAGGGGACATTCAAGTCGACCTCATCGATCTTCCGGATGCGTCAGGAGTTCCTACGCATAYAATACGATGGCTCATCGATTGTGAGATTTTTTTTTTGTTGCTTCCAATTTTTTTAACCGTTTCAGAAGCACATTTGAAGTTTATGCGTACAAGTACGAAAAATAAAATGAATTCAGGATAAAGTTGTTACAGTACATCTGAAGTATTCCAAAACAGTTAATTTTGAAGCCAACATAGTCGGAACAGCTTTTGGTGGCACTCTGAAGATCATATTTCATGAGTTTGAAACGGTGAACTGCTTTTTTCAAAAACATCATAAAGCTTGTATTAGAAGAGCTCTAGATTTTTTATCCATTCATCTTGGTTCCTGTAAAAAAAACTTTAAAAAGTGACCGTATTGCCTATACGGTTGAAAACTTTGAATGAAAATGACAAAAAAGCTACAAATTTATGTTCCAAAAATCTCATATAAATCATGTGTAATTTGAATTTTAAAAAATTTCTAAATTTCCAGTCAGAACCTCGAGCCAGAATTACAAATTCATTTCTCATATAAATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGAAAGAGACGGTTGTAA</pcr_primer_p1>
		<pcr_primer_p2>GTGCTTCTGAAACGGTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>446</pcr_amplicon_size>
		<canonical_amplicon>CAGGAAAGAGACGGTTGTAAACCCGAAATGAGGCATCTCCAGCGACCACGTCAACCAATGGAAGTCAGCTCGTGGAATCGATTTCAACTCGGATTCCAAGCTTCATATACGAGCCTGACGAGGATCTGACATTTGACAATTGGTACAACAGATATGGAGACGTCATCACCAAGGACGGATCAACTCTCACCGATGAGGCCAAAGCAAGGTTAGTTTTATCTAAACTCAACACAAAAGAGTATTCTCACTTTGCAAATCGTATCCTCCCGGAAGCTCCAAACTCCCTAAAGTTCGAGGACCTCATTCCGAAGCTCAAGGGGACATTCAAGTCGACCTCATCGATCTTCCGGATGCGTCAGGAGTTCCTACGCATAGAATACGATGGCTCATCGATTGTGAGATTTTTTTTTTGTTGCTTCCAATTTTTTTAACCGTTTCAGAAGCAC</canonical_amplicon>
		<polymorphic_amplicon>CAGGAAAGAGACGGTTGTAAACCCGAAATGAGGCATCTCCAGCGACCACGTCAACCAATGGAAGTCAGCTCGTGGAATCGATTTCAACTCGGATTCCAAGCTTCATATACGAGCCTGACGAGGATCTGACATTTGACAATTGGTACAACAGATATGGAGACGTCATCACCAAGGACGGATCAACTCTCACCGATGAGGCCAAAGCAAGGTTAGTTTTATCTAAACTCAACACAAAAGAGTATTCTCACTTTGCAAATCGTATCCTCCCGGAAGCTCCAAACTCCCTAAAGTTCGAGGACCTCATTCCGAAGCTCAAGGGGACATTCAAGTCGACCTCATCGATCTTCCGGATGCGTCAGGAGTTCCTACGCATAYAATACGATGGCTCATCGATTGTGAGATTTTTTTTTTGTTGCTTCCAATTTTTTTAACCGTTTCAGAAGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24634</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>275534</contig_pos>
        <strand>+</strand>
        <context>GATTGTGAGA[A/G]WTTTTTTWTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCGTCAGGAGTTCCTACGCATAGAATACGATGGCTCATCGATTGTGAGA</left_flank>
        <right_flank>TTTTTTTTTGTTGCTTCCAATTTTTTTAACCGTTTCAGAAGCACATTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTCCCCTTGACTTTGTATCCAACCAATCAAGCAAGTATAACTCTTACATATTTCAATACAAATTAAAAAATTGAAAAAAAACGATCCTATCAATTTCAGGAAAGAGACGGTTGTAAACCCGAAATGAGGCATCTCCAGCGACCACGTCAACCAATGGAAGTCAGCTCGTGGAATCGATTTCAACTCGGATTCCAAGCTTCATATACGAGCCTGACGAGGATCTGACATTTGACAATTGGTACAACAGATATGGAGACGTCATCACCAAGGACGGATCAACTCTCACCGATGAGGCCAAAGCAAGGTTAGTTTTATCTAAACTCAACACAAAAGAGTATTCTCACTTTGCAAATCGTATCCTCCCGGAAGCTCCAAACTCCCTAAAGTTCGAGGACCTCATTCCGAAGCTCAAGGGGACATTCAAGTCGACCTCATCGATCTTCCGGATGCGTCAGGAGTTCCTACGCATAGAATACGATGGCTCATCGATTGTGAGATTTTTTTTTTGTTGCTTCCAATTTTTTTAACCGTTTCAGAAGCACATTTGAAGTTTATGCGTACAAGTACGAAAAATAAAATGAATTCAGGATAAAGTTGTTACAGTACATCTGAAGTATTCCAAAACAGTTAATTTTGAAGCCAACATAGTCGGAACAGCTTTTGGTGGCACTCTGAAGATCATATTTCATGAGTTTGAAACGGTGAACTGCTTTTTTCAAAAACATCATAAAGCTTGTATTAGAAGAGCTCTAGATTTTTTATCCATTCATCTTGGTTCCTGTAAAAAAAACTTTAAAAAGTGACCGTATTGCCTATACGGTTGAAAACTTTGAATGAAAATGACAAAAAAGCTACAAATTTATGTTCCAAAAATCTCATATAAATCATGTGTAATTTGAATTTTAAAAAATTTCTAAATTTCCAGTCAGAACCTCGAGCCAGAATTACAAATTCATTTCTCATATAAATCAGGGTTTTCGGTTTATATATGCTCCATT</canonical>
            <polymorphic>TTGTCCCCTTGACTTTGTATCCAACCAATCAAGCAAGTATAACTCTTACATATTTCAATACAAATTAAAAAATTGAAAAAAAACGATCCTATCAATTTCAGGAAAGAGACGGTTGTAAACCCGAAATGAGGCATCTCCAGCGACCACGTCAACCAATGGAAGTCAGCTCGTGGAATCGATTTCAACTCGGATTCCAAGCTTCATATACGAGCCTGACGAGGATCTGACATTTGACAATTGGTACAACAGATATGGAGACGTCATCACCAAGGACGGATCAACTCTCACCGATGAGGCCAAAGCAAGGTTAGTTTTATCTAAACTCAACACAAAAGAGTATTCTCACTTTGCAAATCGTATCCTCCCGGAAGCTCCAAACTCCCTAAAGTTCGAGGACCTCATTCCGAAGCTCAAGGGGACATTCAAGTCGACCTCATCGATCTTCCGGATGCGTCAGGAGTTCCTACGCATAGAATACGATGGCTCATCGATTGTGAGARTTTTTTTTTGTTGCTTCCAATTTTTTTAACCGTTTCAGAAGCACATTTGAAGTTTATGCGTACAAGTACGAAAAATAAAATGAATTCAGGATAAAGTTGTTACAGTACATCTGAAGTATTCCAAAACAGTTAATTTTGAAGCCAACATAGTCGGAACAGCTTTTGGTGGCACTCTGAAGATCATATTTCATGAGTTTGAAACGGTGAACTGCTTTTTTCAAAAACATCATAAAGCTTGTATTAGAAGAGCTCTAGATTTTTTATCCATTCATCTTGGTTCCTGTAAAAAAAACTTTAAAAAGTGACCGTATTGCCTATACGGTTGAAAACTTTGAATGAAAATGACAAAAAAGCTACAAATTTATGTTCCAAAAATCTCATATAAATCATGTGTAATTTGAATTTTAAAAAATTTCTAAATTTCCAGTCAGAACCTCGAGCCAGAATTACAAATTCATTTCTCATATAAATCAGGGTTTTCGGTTTATATATGCTCCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGAAAGAGACGGTTGTAA</pcr_primer_p1>
		<pcr_primer_p2>AATTCATTTTATTTTTCGTACTTGT</pcr_primer_p2>
		<pcr_amplicon_size>488</pcr_amplicon_size>
		<canonical_amplicon>CAGGAAAGAGACGGTTGTAAACCCGAAATGAGGCATCTCCAGCGACCACGTCAACCAATGGAAGTCAGCTCGTGGAATCGATTTCAACTCGGATTCCAAGCTTCATATACGAGCCTGACGAGGATCTGACATTTGACAATTGGTACAACAGATATGGAGACGTCATCACCAAGGACGGATCAACTCTCACCGATGAGGCCAAAGCAAGGTTAGTTTTATCTAAACTCAACACAAAAGAGTATTCTCACTTTGCAAATCGTATCCTCCCGGAAGCTCCAAACTCCCTAAAGTTCGAGGACCTCATTCCGAAGCTCAAGGGGACATTCAAGTCGACCTCATCGATCTTCCGGATGCGTCAGGAGTTCCTACGCATAGAATACGATGGCTCATCGATTGTGAGATTTTTTTTTTGTTGCTTCCAATTTTTTTAACCGTTTCAGAAGCACATTTGAAGTTTATGCGTACAAGTACGAAAAATAAAATGAATT</canonical_amplicon>
		<polymorphic_amplicon>CAGGAAAGAGACGGTTGTAAACCCGAAATGAGGCATCTCCAGCGACCACGTCAACCAATGGAAGTCAGCTCGTGGAATCGATTTCAACTCGGATTCCAAGCTTCATATACGAGCCTGACGAGGATCTGACATTTGACAATTGGTACAACAGATATGGAGACGTCATCACCAAGGACGGATCAACTCTCACCGATGAGGCCAAAGCAAGGTTAGTTTTATCTAAACTCAACACAAAAGAGTATTCTCACTTTGCAAATCGTATCCTCCCGGAAGCTCCAAACTCCCTAAAGTTCGAGGACCTCATTCCGAAGCTCAAGGGGACATTCAAGTCGACCTCATCGATCTTCCGGATGCGTCAGGAGTTCCTACGCATAGAATACGATGGCTCATCGATTGTGAGARTTTTTTTTTGTTGCTTCCAATTTTTTTAACCGTTTCAGAAGCACATTTGAAGTTTATGCGTACAAGTACGAAAAATAAAATGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24635</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>275535</contig_pos>
        <strand>+</strand>
        <context>ATTGTGAGAR[A/T]TTTTTTWTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCGTCAGGAGTTCCTACGCATAGAATACGATGGCTCATCGATTGTGAGAT</left_flank>
        <right_flank>TTTTTTTTGTTGCTTCCAATTTTTTTAACCGTTTCAGAAGCACATTTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCCCCTTGACTTTGTATCCAACCAATCAAGCAAGTATAACTCTTACATATTTCAATACAAATTAAAAAATTGAAAAAAAACGATCCTATCAATTTCAGGAAAGAGACGGTTGTAAACCCGAAATGAGGCATCTCCAGCGACCACGTCAACCAATGGAAGTCAGCTCGTGGAATCGATTTCAACTCGGATTCCAAGCTTCATATACGAGCCTGACGAGGATCTGACATTTGACAATTGGTACAACAGATATGGAGACGTCATCACCAAGGACGGATCAACTCTCACCGATGAGGCCAAAGCAAGGTTAGTTTTATCTAAACTCAACACAAAAGAGTATTCTCACTTTGCAAATCGTATCCTCCCGGAAGCTCCAAACTCCCTAAAGTTCGAGGACCTCATTCCGAAGCTCAAGGGGACATTCAAGTCGACCTCATCGATCTTCCGGATGCGTCAGGAGTTCCTACGCATAGAATACGATGGCTCATCGATTGTGAGATTTTTTTTTTGTTGCTTCCAATTTTTTTAACCGTTTCAGAAGCACATTTGAAGTTTATGCGTACAAGTACGAAAAATAAAATGAATTCAGGATAAAGTTGTTACAGTACATCTGAAGTATTCCAAAACAGTTAATTTTGAAGCCAACATAGTCGGAACAGCTTTTGGTGGCACTCTGAAGATCATATTTCATGAGTTTGAAACGGTGAACTGCTTTTTTCAAAAACATCATAAAGCTTGTATTAGAAGAGCTCTAGATTTTTTATCCATTCATCTTGGTTCCTGTAAAAAAAACTTTAAAAAGTGACCGTATTGCCTATACGGTTGAAAACTTTGAATGAAAATGACAAAAAAGCTACAAATTTATGTTCCAAAAATCTCATATAAATCATGTGTAATTTGAATTTTAAAAAATTTCTAAATTTCCAGTCAGAACCTCGAGCCAGAATTACAAATTCATTTCTCATATAAATCAGGGTTTTCGGTTTATATATGCTCCATTG</canonical>
            <polymorphic>TGTCCCCTTGACTTTGTATCCAACCAATCAAGCAAGTATAACTCTTACATATTTCAATACAAATTAAAAAATTGAAAAAAAACGATCCTATCAATTTCAGGAAAGAGACGGTTGTAAACCCGAAATGAGGCATCTCCAGCGACCACGTCAACCAATGGAAGTCAGCTCGTGGAATCGATTTCAACTCGGATTCCAAGCTTCATATACGAGCCTGACGAGGATCTGACATTTGACAATTGGTACAACAGATATGGAGACGTCATCACCAAGGACGGATCAACTCTCACCGATGAGGCCAAAGCAAGGTTAGTTTTATCTAAACTCAACACAAAAGAGTATTCTCACTTTGCAAATCGTATCCTCCCGGAAGCTCCAAACTCCCTAAAGTTCGAGGACCTCATTCCGAAGCTCAAGGGGACATTCAAGTCGACCTCATCGATCTTCCGGATGCGTCAGGAGTTCCTACGCATAGAATACGATGGCTCATCGATTGTGAGATWTTTTTTTTGTTGCTTCCAATTTTTTTAACCGTTTCAGAAGCACATTTGAAGTTTATGCGTACAAGTACGAAAAATAAAATGAATTCAGGATAAAGTTGTTACAGTACATCTGAAGTATTCCAAAACAGTTAATTTTGAAGCCAACATAGTCGGAACAGCTTTTGGTGGCACTCTGAAGATCATATTTCATGAGTTTGAAACGGTGAACTGCTTTTTTCAAAAACATCATAAAGCTTGTATTAGAAGAGCTCTAGATTTTTTATCCATTCATCTTGGTTCCTGTAAAAAAAACTTTAAAAAGTGACCGTATTGCCTATACGGTTGAAAACTTTGAATGAAAATGACAAAAAAGCTACAAATTTATGTTCCAAAAATCTCATATAAATCATGTGTAATTTGAATTTTAAAAAATTTCTAAATTTCCAGTCAGAACCTCGAGCCAGAATTACAAATTCATTTCTCATATAAATCAGGGTTTTCGGTTTATATATGCTCCATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGAAAGAGACGGTTGTAA</pcr_primer_p1>
		<pcr_primer_p2>AATTCATTTTATTTTTCGTACTTGT</pcr_primer_p2>
		<pcr_amplicon_size>488</pcr_amplicon_size>
		<canonical_amplicon>CAGGAAAGAGACGGTTGTAAACCCGAAATGAGGCATCTCCAGCGACCACGTCAACCAATGGAAGTCAGCTCGTGGAATCGATTTCAACTCGGATTCCAAGCTTCATATACGAGCCTGACGAGGATCTGACATTTGACAATTGGTACAACAGATATGGAGACGTCATCACCAAGGACGGATCAACTCTCACCGATGAGGCCAAAGCAAGGTTAGTTTTATCTAAACTCAACACAAAAGAGTATTCTCACTTTGCAAATCGTATCCTCCCGGAAGCTCCAAACTCCCTAAAGTTCGAGGACCTCATTCCGAAGCTCAAGGGGACATTCAAGTCGACCTCATCGATCTTCCGGATGCGTCAGGAGTTCCTACGCATAGAATACGATGGCTCATCGATTGTGAGATTTTTTTTTTGTTGCTTCCAATTTTTTTAACCGTTTCAGAAGCACATTTGAAGTTTATGCGTACAAGTACGAAAAATAAAATGAATT</canonical_amplicon>
		<polymorphic_amplicon>CAGGAAAGAGACGGTTGTAAACCCGAAATGAGGCATCTCCAGCGACCACGTCAACCAATGGAAGTCAGCTCGTGGAATCGATTTCAACTCGGATTCCAAGCTTCATATACGAGCCTGACGAGGATCTGACATTTGACAATTGGTACAACAGATATGGAGACGTCATCACCAAGGACGGATCAACTCTCACCGATGAGGCCAAAGCAAGGTTAGTTTTATCTAAACTCAACACAAAAGAGTATTCTCACTTTGCAAATCGTATCCTCCCGGAAGCTCCAAACTCCCTAAAGTTCGAGGACCTCATTCCGAAGCTCAAGGGGACATTCAAGTCGACCTCATCGATCTTCCGGATGCGTCAGGAGTTCCTACGCATAGAATACGATGGCTCATCGATTGTGAGATWTTTTTTTTGTTGCTTCCAATTTTTTTAACCGTTTCAGAAGCACATTTGAAGTTTATGCGTACAAGTACGAAAAATAAAATGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24636</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>275588</contig_pos>
        <strand>+</strand>
        <context>CATTTGAAGT[G/T]TATGCGTACA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTTTGTTGCTTCCAATTTTTTTAACCGTTTCAGAAGCACATTTGAAGT</left_flank>
        <right_flank>TATGCGTACAAGTACGAAAAATAAAATGAATTCAGGATAAAGTTGTTACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAATACAAATTAAAAAATTGAAAAAAAACGATCCTATCAATTTCAGGAAAGAGACGGTTGTAAACCCGAAATGAGGCATCTCCAGCGACCACGTCAACCAATGGAAGTCAGCTCGTGGAATCGATTTCAACTCGGATTCCAAGCTTCATATACGAGCCTGACGAGGATCTGACATTTGACAATTGGTACAACAGATATGGAGACGTCATCACCAAGGACGGATCAACTCTCACCGATGAGGCCAAAGCAAGGTTAGTTTTATCTAAACTCAACACAAAAGAGTATTCTCACTTTGCAAATCGTATCCTCCCGGAAGCTCCAAACTCCCTAAAGTTCGAGGACCTCATTCCGAAGCTCAAGGGGACATTCAAGTCGACCTCATCGATCTTCCGGATGCGTCAGGAGTTCCTACGCATAGAATACGATGGCTCATCGATTGTGAGATTTTTTTTTTGTTGCTTCCAATTTTTTTAACCGTTTCAGAAGCACATTTGAAGTTTATGCGTACAAGTACGAAAAATAAAATGAATTCAGGATAAAGTTGTTACAGTACATCTGAAGTATTCCAAAACAGTTAATTTTGAAGCCAACATAGTCGGAACAGCTTTTGGTGGCACTCTGAAGATCATATTTCATGAGTTTGAAACGGTGAACTGCTTTTTTCAAAAACATCATAAAGCTTGTATTAGAAGAGCTCTAGATTTTTTATCCATTCATCTTGGTTCCTGTAAAAAAAACTTTAAAAAGTGACCGTATTGCCTATACGGTTGAAAACTTTGAATGAAAATGACAAAAAAGCTACAAATTTATGTTCCAAAAATCTCATATAAATCATGTGTAATTTGAATTTTAAAAAATTTCTAAATTTCCAGTCAGAACCTCGAGCCAGAATTACAAATTCATTTCTCATATAAATCAGGGTTTTCGGTTTATATATGCTCCATTGCTCTATTCTAATGTTCGAAAATTTCCCGCCAGGTCTCCTAATCTCCCAGGTCG</canonical>
            <polymorphic>TCAATACAAATTAAAAAATTGAAAAAAAACGATCCTATCAATTTCAGGAAAGAGACGGTTGTAAACCCGAAATGAGGCATCTCCAGCGACCACGTCAACCAATGGAAGTCAGCTCGTGGAATCGATTTCAACTCGGATTCCAAGCTTCATATACGAGCCTGACGAGGATCTGACATTTGACAATTGGTACAACAGATATGGAGACGTCATCACCAAGGACGGATCAACTCTCACCGATGAGGCCAAAGCAAGGTTAGTTTTATCTAAACTCAACACAAAAGAGTATTCTCACTTTGCAAATCGTATCCTCCCGGAAGCTCCAAACTCCCTAAAGTTCGAGGACCTCATTCCGAAGCTCAAGGGGACATTCAAGTCGACCTCATCGATCTTCCGGATGCGTCAGGAGTTCCTACGCATAGAATACGATGGCTCATCGATTGTGAGATTTTTTTTTTGTTGCTTCCAATTTTTTTAACCGTTTCAGAAGCACATTTGAAGTKTATGCGTACAAGTACGAAAAATAAAATGAATTCAGGATAAAGTTGTTACAGTACATCTGAAGTATTCCAAAACAGTTAATTTTGAAGCCAACATAGTCGGAACAGCTTTTGGTGGCACTCTGAAGATCATATTTCATGAGTTTGAAACGGTGAACTGCTTTTTTCAAAAACATCATAAAGCTTGTATTAGAAGAGCTCTAGATTTTTTATCCATTCATCTTGGTTCCTGTAAAAAAAACTTTAAAAAGTGACCGTATTGCCTATACGGTTGAAAACTTTGAATGAAAATGACAAAAAAGCTACAAATTTATGTTCCAAAAATCTCATATAAATCATGTGTAATTTGAATTTTAAAAAATTTCTAAATTTCCAGTCAGAACCTCGAGCCAGAATTACAAATTCATTTCTCATATAAATCAGGGTTTTCGGTTTATATATGCTCCATTGCTCTATTCTAATGTTCGAAAATTTCCCGCCAGGTCTCCTAATCTCCCAGGTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGGAAAGAGACGGTTGTA</pcr_primer_p1>
		<pcr_primer_p2>TCAGATGTACTGTAACAACTTTATCC</pcr_primer_p2>
		<pcr_amplicon_size>517</pcr_amplicon_size>
		<canonical_amplicon>TCAGGAAAGAGACGGTTGTAAACCCGAAATGAGGCATCTCCAGCGACCACGTCAACCAATGGAAGTCAGCTCGTGGAATCGATTTCAACTCGGATTCCAAGCTTCATATACGAGCCTGACGAGGATCTGACATTTGACAATTGGTACAACAGATATGGAGACGTCATCACCAAGGACGGATCAACTCTCACCGATGAGGCCAAAGCAAGGTTAGTTTTATCTAAACTCAACACAAAAGAGTATTCTCACTTTGCAAATCGTATCCTCCCGGAAGCTCCAAACTCCCTAAAGTTCGAGGACCTCATTCCGAAGCTCAAGGGGACATTCAAGTCGACCTCATCGATCTTCCGGATGCGTCAGGAGTTCCTACGCATAGAATACGATGGCTCATCGATTGTGAGATTTTTTTTTTGTTGCTTCCAATTTTTTTAACCGTTTCAGAAGCACATTTGAAGTTTATGCGTACAAGTACGAAAAATAAAATGAATTCAGGATAAAGTTGTTACAGTACATCTGA</canonical_amplicon>
		<polymorphic_amplicon>TCAGGAAAGAGACGGTTGTAAACCCGAAATGAGGCATCTCCAGCGACCACGTCAACCAATGGAAGTCAGCTCGTGGAATCGATTTCAACTCGGATTCCAAGCTTCATATACGAGCCTGACGAGGATCTGACATTTGACAATTGGTACAACAGATATGGAGACGTCATCACCAAGGACGGATCAACTCTCACCGATGAGGCCAAAGCAAGGTTAGTTTTATCTAAACTCAACACAAAAGAGTATTCTCACTTTGCAAATCGTATCCTCCCGGAAGCTCCAAACTCCCTAAAGTTCGAGGACCTCATTCCGAAGCTCAAGGGGACATTCAAGTCGACCTCATCGATCTTCCGGATGCGTCAGGAGTTCCTACGCATAGAATACGATGGCTCATCGATTGTGAGATTTTTTTTTTGTTGCTTCCAATTTTTTTAACCGTTTCAGAAGCACATTTGAAGTKTATGCGTACAAGTACGAAAAATAAAATGAATTCAGGATAAAGTTGTTACAGTACATCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24637</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>299299</contig_pos>
        <strand>+</strand>
        <context>CTTTTCAAAT[A/G]GCTCCAATGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAATCCAATGATGGCTGCTCATTACCCGTTCCCCGGCGCTTTTCAAAT</left_flank>
        <right_flank>GCTCCAATGGCTCAACGAATGCCGATTTGTCCGTTTGCTATGATGCGTCA</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCAGGCTTTTTAGAGAATTGAAAATTTTTAAAAATGAATTTCGAAAAAATCTGTTTCAGAACGTTATAAACTTTTAAAGACATTGAGACGATCAATGAATAAATCTTTCGATTTTCTGAATATTAATTTTCATAATCAAAATACCGAAAAAGTATAACAACTCCCCAGACTAAGAAAATCTTTAATCCCAATTCTTTACAGGCAGAACCCGGAAAATCCCCTCTCGCCCTTCTCGCAAAAACATGCGAAACGATTGGCCTTCCCGAAGGATCCATGAAAAAGACTCTCGGCTCTCCATACCACGAGAAAAAAGAGTCCTCCCATCAACAAAAACCAAAAGCCCCATCACCACGATCAACACCTCAATCAAAAGAGCCGACACTCACATTCCCAGGCCTTCCGAAGCCTCAATTTCCAATGGGAATGCCTCCAATGGGTTTCCCATTCTTCAATCCAATGATGGCTGCTCATTACCCGTTCCCCGGCGCTTTTCAAATAGCTCCAATGGCTCAACGAATGCCGATTTGTCCGTTTGCTATGATGCGTCAACCATGTGCTAATCCGGCGTGTATGACGTGTCCAGGATCATCGAATGGAGTCAAAAATGGAGGTCAAATGAGTGCTGAAGTGATGGCTCAATTTGCAGCTCACCCATTGTTCTCAATGTACGCTGGAGCCATGATGCCAACTATGACTGGGTGAGTTTTCTAGATTTTTTATTTGACCTACTTTTCTTCTCCTATTTTTAAAGACTCCTGGAATTACTAAAATCATAATTACTTTCAAAAATTGTGAACATTTTGAAACTGAATTTTTTTCATGCTAAACAAGCGTCTACCACCTTTAACATACCATAAAATTTGTAACAGAAGGATCCCTGACTTGCAACTTTGAGCCAATTTATATCAGTTCCTGCTATTGACACCAAAAATGTGTCAACTGATAAAATATTGTTCATAATATGGCAAACGTTTCATCAGTTGACTAATTTTTGATAT</canonical>
            <polymorphic>ATTCAGGCTTTTTAGAGAATTGAAAATTTTTAAAAATGAATTTCGAAAAAATCTGTTTCAGAACGTTATAAACTTTTAAAGACATTGAGACGATCAATGAATAAATCTTTCGATTTTCTGAATATTAATTTTCATAATCAAAATACCGAAAAAGTATAACAACTCCCCAGACTAAGAAAATCTTTAATCCCAATTCTTTACAGGCAGAACCCGGAAAATCCCCTCTCGCCCTTCTCGCAAAAACATGCGAAACGATTGGCCTTCCCGAAGGATCCATGAAAAAGACTCTCGGCTCTCCATACCACGAGAAAAAAGAGTCCTCCCATCAACAAAAACCAAAAGCCCCATCACCACGATCAACACCTCAATCAAAAGAGCCGACACTCACATTCCCAGGCCTTCCGAAGCCTCAATTTCCAATGGGAATGCCTCCAATGGGTTTCCCATTCTTCAATCCAATGATGGCTGCTCATTACCCGTTCCCCGGCGCTTTTCAAATRGCTCCAATGGCTCAACGAATGCCGATTTGTCCGTTTGCTATGATGCGTCAACCATGTGCTAATCCGGCGTGTATGACGTGTCCAGGATCATCGAATGGAGTCAAAAATGGAGGTCAAATGAGTGCTGAAGTGATGGCTCAATTTGCAGCTCACCCATTGTTCTCAATGTACGCTGGAGCCATGATGCCAACTATGACTGGGTGAGTTTTCTAGATTTTTTATTTGACCTACTTTTCTTCTCCTATTTTTAAAGACTCCTGGAATTACTAAAATCATAATTACTTTCAAAAATTGTGAACATTTTGAAACTGAATTTTTTTCATGCTAAACAAGCGTCTACCACCTTTAACATACCATAAAATTTGTAACAGAAGGATCCCTGACTTGCAACTTTGAGCCAATTTATATCAGTTCCTGCTATTGACACCAAAAATGTGTCAACTGATAAAATATTGTTCATAATATGGCAAACGTTTCATCAGTTGACTAATTTTTGATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>501 352 147</canonical_bands>
                <polymorphic_bands>648 352</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>252 219 126 103 58 50 36 35 33 30 20 12 10 9 7</canonical_bands>
                <polymorphic_bands>252 219 126 103 58 50 45 35 33 30 20 12 10 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAACACCTCAATCAAAAGAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTGACTCCATTCGATGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAACACCTCAATCAAAAGAGCCGACACTCACATTCCCAGGCCTTCCGAAGCCTCAATTTCCAATGGGAATGCCTCCAATGGGTTTCCCATTCTTCAATCCAATGATGGCTGCTCATTACCCGTTCCCCGGCGCTTTTCAAATAGCTCCAATGGCTCAACGAATGCCGATTTGTCCGTTTGCTATGATGCGTCAACCATGTGCTAATCCGGCGTGTATGACGTGTCCAGGATCATCGAATGGAGTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCAACACCTCAATCAAAAGAGCCGACACTCACATTCCCAGGCCTTCCGAAGCCTCAATTTCCAATGGGAATGCCTCCAATGGGTTTCCCATTCTTCAATCCAATGATGGCTGCTCATTACCCGTTCCCCGGCGCTTTTCAAATRGCTCCAATGGCTCAACGAATGCCGATTTGTCCGTTTGCTATGATGCGTCAACCATGTGCTAATCCGGCGTGTATGACGTGTCCAGGATCATCGAATGGAGTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24638</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>299554</contig_pos>
        <strand>+</strand>
        <context>TTTTTAAAGA[A/C]TCCTGGAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTTTCTAGATTTTTTATTTGACCTACTTTTCTTCTCCTATTTTTAAAGA</left_flank>
        <right_flank>TCCTGGAATTACTAAAATCATAATTACTTTCAAAAATTGTGAACATTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGCCTTCCCGAAGGATCCATGAAAAAGACTCTCGGCTCTCCATACCACGAGAAAAAAGAGTCCTCCCATCAACAAAAACCAAAAGCCCCATCACCACGATCAACACCTCAATCAAAAGAGCCGACACTCACATTCCCAGGCCTTCCGAAGCCTCAATTTCCAATGGGAATGCCTCCAATGGGTTTCCCATTCTTCAATCCAATGATGGCTGCTCATTACCCGTTCCCCGGCGCTTTTCAAATAGCTCCAATGGCTCAACGAATGCCGATTTGTCCGTTTGCTATGATGCGTCAACCATGTGCTAATCCGGCGTGTATGACGTGTCCAGGATCATCGAATGGAGTCAAAAATGGAGGTCAAATGAGTGCTGAAGTGATGGCTCAATTTGCAGCTCACCCATTGTTCTCAATGTACGCTGGAGCCATGATGCCAACTATGACTGGGTGAGTTTTCTAGATTTTTTATTTGACCTACTTTTCTTCTCCTATTTTTAAAGACTCCTGGAATTACTAAAATCATAATTACTTTCAAAAATTGTGAACATTTTGAAACTGAATTTTTTTCATGCTAAACAAGCGTCTACCACCTTTAACATACCATAAAATTTGTAACAGAAGGATCCCTGACTTGCAACTTTGAGCCAATTTATATCAGTTCCTGCTATTGACACCAAAAATGTGTCAACTGATAAAATATTGTTCATAATATGGCAAACGTTTCATCAGTTGACTAATTTTTGATATCTCTTATGGATTTTGAGATAATTGAGCTCAAGTGCAAGTATAGGTTACTGTATCTTTATTTGTCTTATAACCCTTTTGGGCCGTTGAGATTAATTTTACGGCCTTACAAAATCATATGGATCCTGAAGGGCCCTAGCTATTTATATCTTGAACCTTCAAATTTTCCAGAATGCCAACCCCAACATCCTACCAAGCCCTCTTGGCCGCTTCGGCCGCAGCCACCTCGACCGCCGCTGCCTCTACCCCAACAGACTT</canonical>
            <polymorphic>TTGGCCTTCCCGAAGGATCCATGAAAAAGACTCTCGGCTCTCCATACCACGAGAAAAAAGAGTCCTCCCATCAACAAAAACCAAAAGCCCCATCACCACGATCAACACCTCAATCAAAAGAGCCGACACTCACATTCCCAGGCCTTCCGAAGCCTCAATTTCCAATGGGAATGCCTCCAATGGGTTTCCCATTCTTCAATCCAATGATGGCTGCTCATTACCCGTTCCCCGGCGCTTTTCAAATAGCTCCAATGGCTCAACGAATGCCGATTTGTCCGTTTGCTATGATGCGTCAACCATGTGCTAATCCGGCGTGTATGACGTGTCCAGGATCATCGAATGGAGTCAAAAATGGAGGTCAAATGAGTGCTGAAGTGATGGCTCAATTTGCAGCTCACCCATTGTTCTCAATGTACGCTGGAGCCATGATGCCAACTATGACTGGGTGAGTTTTCTAGATTTTTTATTTGACCTACTTTTCTTCTCCTATTTTTAAAGAMTCCTGGAATTACTAAAATCATAATTACTTTCAAAAATTGTGAACATTTTGAAACTGAATTTTTTTCATGCTAAACAAGCGTCTACCACCTTTAACATACCATAAAATTTGTAACAGAAGGATCCCTGACTTGCAACTTTGAGCCAATTTATATCAGTTCCTGCTATTGACACCAAAAATGTGTCAACTGATAAAATATTGTTCATAATATGGCAAACGTTTCATCAGTTGACTAATTTTTGATATCTCTTATGGATTTTGAGATAATTGAGCTCAAGTGCAAGTATAGGTTACTGTATCTTTATTTGTCTTATAACCCTTTTGGGCCGTTGAGATTAATTTTACGGCCTTACAAAATCATATGGATCCTGAAGGGCCCTAGCTATTTATATCTTGAACCTTCAAATTTTCCAGAATGCCAACCCCAACATCCTACCAAGCCCTCTTGGCCGCTTCGGCCGCAGCCACCTCGACCGCCGCTGCCTCTACCCCAACAGACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTATGACGTGTCCAGGAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTCAGTTTCAAAATGTTCAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTGTATGACGTGTCCAGGATCATCGAATGGAGTCAAAAATGGAGGTCAAATGAGTGCTGAAGTGATGGCTCAATTTGCAGCTCACCCATTGTTCTCAATGTACGCTGGAGCCATGATGCCAACTATGACTGGGTGAGTTTTCTAGATTTTTTATTTGACCTACTTTTCTTCTCCTATTTTTAAAGACTCCTGGAATTACTAAAATCATAATTACTTTCAAAAATTGTGAACATTTTGAAACTGAATTT</canonical_amplicon>
		<polymorphic_amplicon>GTGTATGACGTGTCCAGGATCATCGAATGGAGTCAAAAATGGAGGTCAAATGAGTGCTGAAGTGATGGCTCAATTTGCAGCTCACCCATTGTTCTCAATGTACGCTGGAGCCATGATGCCAACTATGACTGGGTGAGTTTTCTAGATTTTTTATTTGACCTACTTTTCTTCTCCTATTTTTAAAGAMTCCTGGAATTACTAAAATCATAATTACTTTCAAAAATTGTGAACATTTTGAAACTGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24639</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>319927</contig_pos>
        <strand>+</strand>
        <context>TAAGAAAATT[A/C]CTTTGAAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTCTGAGAACTTGTGAACTTTTTGAAAAATTGGAAAATTAAGAAAATT</left_flank>
        <right_flank>CTTTGAAATATTTCGCAAAACACTTTGAAGTACAGTTGCTGATGATATTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCCAGCTCCCACTTTTTTTTAAGTCGACAATATATATCACGAATTACAAGCAGAACTAGAAACATAACTTTTTTATAACTTTTTATTCAAAAAACATTTGAGCCGTTTTTCTGTTACTATAAGAGATACCGAAATTTGCTCAAAATCACTTTTGATCAAAACTGAATTGCTGTTACAAATAAATCTTAAAGCAGGATACTTTTTCAATCGTGGATTATACGGGTCCCTTTAAAACTATTATAAAGCACTTGAAAAGTTCAAATAGCAACAACTATTTCAAACCCTGGTTATCTGATTTTCTGATTGTGAGACATGAAAATACAATAATGAGGAGATAATAAAATTTGATAACTGCTTTCAGGAAATTTTGTTACAGATTAATTTCGCAAAAAAAAAACTTCAAGACTAATATAACACTCATGCTGTTTTTAGTTCCAACTTATTAATTTTCTGAGAACTTGTGAACTTTTTGAAAAATTGGAAAATTAAGAAAATTACTTTGAAATATTTCGCAAAACACTTTGAAGTACAGTTGCTGATGATATTTGTAAGATCAGAGAAATCGAAAAATTGTCGGTTCAGTGAATAGCTCAAACTATTTTCCAGTTTCAGCAAGATGATGATACATAATTTTTTTAACTGATTAGTCGGAACCTGACATTTTTAAATTATTTTTTCCAGTTTCATTAAGTTTATCATTCAAAAATTCGAACAACAATTCTCTGAATAATTCGACAATCATTTACAACTATAACAAAACAGTAAAGATGTTTGATCAGCTACAGTAATCCTTATAATTCATCACCATGATTCGTCACGACCACATTTTCCAGTTTCCTAAATAAATTTATGACCCATCATAAAATGGAAAAACATAAATTGTCCATTTTTCCAAAAACAAACTAATCAAGTTCTTTTTCTATTCAAAACATTTTCTTGAAAGTCGATTTATATGTATCGTTTCCGCAAAAACCTATTCATCTCATTAATCATTTTG</canonical>
            <polymorphic>TTTTCCAGCTCCCACTTTTTTTTAAGTCGACAATATATATCACGAATTACAAGCAGAACTAGAAACATAACTTTTTTATAACTTTTTATTCAAAAAACATTTGAGCCGTTTTTCTGTTACTATAAGAGATACCGAAATTTGCTCAAAATCACTTTTGATCAAAACTGAATTGCTGTTACAAATAAATCTTAAAGCAGGATACTTTTTCAATCGTGGATTATACGGGTCCCTTTAAAACTATTATAAAGCACTTGAAAAGTTCAAATAGCAACAACTATTTCAAACCCTGGTTATCTGATTTTCTGATTGTGAGACATGAAAATACAATAATGAGGAGATAATAAAATTTGATAACTGCTTTCAGGAAATTTTGTTACAGATTAATTTCGCAAAAAAAAAACTTCAAGACTAATATAACACTCATGCTGTTTTTAGTTCCAACTTATTAATTTTCTGAGAACTTGTGAACTTTTTGAAAAATTGGAAAATTAAGAAAATTMCTTTGAAATATTTCGCAAAACACTTTGAAGTACAGTTGCTGATGATATTTGTAAGATCAGAGAAATCGAAAAATTGTCGGTTCAGTGAATAGCTCAAACTATTTTCCAGTTTCAGCAAGATGATGATACATAATTTTTTTAACTGATTAGTCGGAACCTGACATTTTTAAATTATTTTTTCCAGTTTCATTAAGTTTATCATTCAAAAATTCGAACAACAATTCTCTGAATAATTCGACAATCATTTACAACTATAACAAAACAGTAAAGATGTTTGATCAGCTACAGTAATCCTTATAATTCATCACCATGATTCGTCACGACCACATTTTCCAGTTTCCTAAATAAATTTATGACCCATCATAAAATGGAAAAACATAAATTGTCCATTTTTCCAAAAACAAACTAATCAAGTTCTTTTTCTATTCAAAACATTTTCTTGAAAGTCGATTTATATGTATCGTTTCCGCAAAAACCTATTCATCTCATTAATCATTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGGAAATTTTGTTACAGAT</pcr_primer_p1>
		<pcr_primer_p2>TAGTTTGAGCTATTCACTGAACC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGGAAATTTTGTTACAGATTAATTTCGCAAAAAAAAAACTTCAAGACTAATATAACACTCATGCTGTTTTTAGTTCCAACTTATTAATTTTCTGAGAACTTGTGAACTTTTTGAAAAATTGGAAAATTAAGAAAATTACTTTGAAATATTTCGCAAAACACTTTGAAGTACAGTTGCTGATGATATTTGTAAGATCAGAGAAATCGAAAAATTGTCGGTTCAGTGAATAGCTCAAACTA</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGGAAATTTTGTTACAGATTAATTTCGCAAAAAAAAAACTTCAAGACTAATATAACACTCATGCTGTTTTTAGTTCCAACTTATTAATTTTCTGAGAACTTGTGAACTTTTTGAAAAATTGGAAAATTAAGAAAATTMCTTTGAAATATTTCGCAAAACACTTTGAAGTACAGTTGCTGATGATATTTGTAAGATCAGAGAAATCGAAAAATTGTCGGTTCAGTGAATAGCTCAAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24640</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>343645</contig_pos>
        <strand>+</strand>
        <context>AACGCAGTAG[A/G]AAAACTAGCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAATGTTTCAGAAAACATGCTGATATCTGCAGAAACAGAAACGCAGTAG</left_flank>
        <right_flank>AAAACTAGCCACTACTACGAAAGCTGATGTGACGCATGTGTTGTCTAAAT</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCGAGCGGCGGCGGCCGCCGGCGTTTTTATGCGCACTACGGTAGATAAAAAGTTGTGCAGTCTGCATTTTTTCGTTAACGCACATTTCTTTATTGTTTTTTGGCTTAATTTTAATCGTTTTTTGCCAAAGTTGTCTCGTTTTATTTAAAAAATGGAAGATTTTACAATGAAAGGAGAGATGGAAGGTGTTCGATTTCAGAAAGTGAGTAAAAATAGAACGTTTCGCTGAAAAGAACAATTTCCAGGTTAATCTTGTCGGCAAGATGAATTCGTTTTTTAAAAGAATCGAAATCGAAACTGTGGGAAGCATAAAATTTTTATCAACCAATTTTGTTGTCTGTGTCCAGTGCAACAAGGTCTTTACTGACGGCGGAGGACAAATGAGGCAAGAAAATATGAAAAAAATACCTTTATATTCATAAAAATCATACAGTTTCGATTTTATTTACCAATGTTTCAGAAAACATGCTGATATCTGCAGAAACAGAAACGCAGTAGAAAAACTAGCCACTACTACGAAAGCTGATGTGACGCATGTGTTGTCTAAATACTTTGCACGTTCTTCAAAACCTCTGCATTTTCTAGAATGCTCAGACTTTCGCAAGATGTGTGAGGAATTATTGAAGCTCGGGTAAGCTTTTGAATGGTTGCTACTGATTAAATAATCAAGCTTTAGGCGAGGTGCAAATTTGGAAATTGATATGAAGTCAATATTACCAAGCCGCAAAACAGTAAAAAATAAGCTTATGGAGTGTCTAGAACTGGAAATTGAGAATATTCGAAGAATGGTATTTTCGAATGTCTCGAAAAAATTTTTTATTGATGTCATTTCAGTTGGAACCTGCTGTCAAGTCTTCCTCGATTTCTTTCATGTTAGATTTCGGAAAAGTTTACGATAATTTTTTGGCTATCAAAGCAAGTTATCTATTGGAACGTGCAAATGAGAATGTCCAATTGCGTCTATACGAAATTTATGAGCAACGGCAAAAAATTTGTAAC</canonical>
            <polymorphic>GGCGAGCGGCGGCGGCCGCCGGCGTTTTTATGCGCACTACGGTAGATAAAAAGTTGTGCAGTCTGCATTTTTTCGTTAACGCACATTTCTTTATTGTTTTTTGGCTTAATTTTAATCGTTTTTTGCCAAAGTTGTCTCGTTTTATTTAAAAAATGGAAGATTTTACAATGAAAGGAGAGATGGAAGGTGTTCGATTTCAGAAAGTGAGTAAAAATAGAACGTTTCGCTGAAAAGAACAATTTCCAGGTTAATCTTGTCGGCAAGATGAATTCGTTTTTTAAAAGAATCGAAATCGAAACTGTGGGAAGCATAAAATTTTTATCAACCAATTTTGTTGTCTGTGTCCAGTGCAACAAGGTCTTTACTGACGGCGGAGGACAAATGAGGCAAGAAAATATGAAAAAAATACCTTTATATTCATAAAAATCATACAGTTTCGATTTTATTTACCAATGTTTCAGAAAACATGCTGATATCTGCAGAAACAGAAACGCAGTAGRAAAACTAGCCACTACTACGAAAGCTGATGTGACGCATGTGTTGTCTAAATACTTTGCACGTTCTTCAAAACCTCTGCATTTTCTAGAATGCTCAGACTTTCGCAAGATGTGTGAGGAATTATTGAAGCTCGGGTAAGCTTTTGAATGGTTGCTACTGATTAAATAATCAAGCTTTAGGCGAGGTGCAAATTTGGAAATTGATATGAAGTCAATATTACCAAGCCGCAAAACAGTAAAAAATAAGCTTATGGAGTGTCTAGAACTGGAAATTGAGAATATTCGAAGAATGGTATTTTCGAATGTCTCGAAAAAATTTTTTATTGATGTCATTTCAGTTGGAACCTGCTGTCAAGTCTTCCTCGATTTCTTTCATGTTAGATTTCGGAAAAGTTTACGATAATTTTTTGGCTATCAAAGCAAGTTATCTATTGGAACGTGCAAATGAGAATGTCCAATTGCGTCTATACGAAATTTATGAGCAACGGCAAAAAATTTGTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAATGAGGCAAGAAAATATG</pcr_primer_p1>
		<pcr_primer_p2>CTTCAATAATTCCTCACACATCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACAAATGAGGCAAGAAAATATGAAAAAAATACCTTTATATTCATAAAAATCATACAGTTTCGATTTTATTTACCAATGTTTCAGAAAACATGCTGATATCTGCAGAAACAGAAACGCAGTAGAAAAACTAGCCACTACTACGAAAGCTGATGTGACGCATGTGTTGTCTAAATACTTTGCACGTTCTTCAAAACCTCTGCATTTTCTAGAATGCTCAGACTTTCGCAAGATGTGTGAGGAATTATTGAAG</canonical_amplicon>
		<polymorphic_amplicon>ACAAATGAGGCAAGAAAATATGAAAAAAATACCTTTATATTCATAAAAATCATACAGTTTCGATTTTATTTACCAATGTTTCAGAAAACATGCTGATATCTGCAGAAACAGAAACGCAGTAGRAAAACTAGCCACTACTACGAAAGCTGATGTGACGCATGTGTTGTCTAAATACTTTGCACGTTCTTCAAAACCTCTGCATTTTCTAGAATGCTCAGACTTTCGCAAGATGTGTGAGGAATTATTGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24641</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>343707</contig_pos>
        <strand>+</strand>
        <context>CTTTGCACGT[A/T]CTTCAAAACC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTACTACGAAAGCTGATGTGACGCATGTGTTGTCTAAATACTTTGCACGT</left_flank>
        <right_flank>CTTCAAAACCTCTGCATTTTCTAGAATGCTCAGACTTTCGCAAGATGTGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGCATTTTTTCGTTAACGCACATTTCTTTATTGTTTTTTGGCTTAATTTTAATCGTTTTTTGCCAAAGTTGTCTCGTTTTATTTAAAAAATGGAAGATTTTACAATGAAAGGAGAGATGGAAGGTGTTCGATTTCAGAAAGTGAGTAAAAATAGAACGTTTCGCTGAAAAGAACAATTTCCAGGTTAATCTTGTCGGCAAGATGAATTCGTTTTTTAAAAGAATCGAAATCGAAACTGTGGGAAGCATAAAATTTTTATCAACCAATTTTGTTGTCTGTGTCCAGTGCAACAAGGTCTTTACTGACGGCGGAGGACAAATGAGGCAAGAAAATATGAAAAAAATACCTTTATATTCATAAAAATCATACAGTTTCGATTTTATTTACCAATGTTTCAGAAAACATGCTGATATCTGCAGAAACAGAAACGCAGTAGAAAAACTAGCCACTACTACGAAAGCTGATGTGACGCATGTGTTGTCTAAATACTTTGCACGTTCTTCAAAACCTCTGCATTTTCTAGAATGCTCAGACTTTCGCAAGATGTGTGAGGAATTATTGAAGCTCGGGTAAGCTTTTGAATGGTTGCTACTGATTAAATAATCAAGCTTTAGGCGAGGTGCAAATTTGGAAATTGATATGAAGTCAATATTACCAAGCCGCAAAACAGTAAAAAATAAGCTTATGGAGTGTCTAGAACTGGAAATTGAGAATATTCGAAGAATGGTATTTTCGAATGTCTCGAAAAAATTTTTTATTGATGTCATTTCAGTTGGAACCTGCTGTCAAGTCTTCCTCGATTTCTTTCATGTTAGATTTCGGAAAAGTTTACGATAATTTTTTGGCTATCAAAGCAAGTTATCTATTGGAACGTGCAAATGAGAATGTCCAATTGCGTCTATACGAAATTTATGAGCAACGGCAAAAAATTTGTAACTGAAATGAAGCAGATTGTAAATACTGATGAAGGCTAATAAAAAACACATGATAAAACATAAT</canonical>
            <polymorphic>CTGCATTTTTTCGTTAACGCACATTTCTTTATTGTTTTTTGGCTTAATTTTAATCGTTTTTTGCCAAAGTTGTCTCGTTTTATTTAAAAAATGGAAGATTTTACAATGAAAGGAGAGATGGAAGGTGTTCGATTTCAGAAAGTGAGTAAAAATAGAACGTTTCGCTGAAAAGAACAATTTCCAGGTTAATCTTGTCGGCAAGATGAATTCGTTTTTTAAAAGAATCGAAATCGAAACTGTGGGAAGCATAAAATTTTTATCAACCAATTTTGTTGTCTGTGTCCAGTGCAACAAGGTCTTTACTGACGGCGGAGGACAAATGAGGCAAGAAAATATGAAAAAAATACCTTTATATTCATAAAAATCATACAGTTTCGATTTTATTTACCAATGTTTCAGAAAACATGCTGATATCTGCAGAAACAGAAACGCAGTAGAAAAACTAGCCACTACTACGAAAGCTGATGTGACGCATGTGTTGTCTAAATACTTTGCACGTWCTTCAAAACCTCTGCATTTTCTAGAATGCTCAGACTTTCGCAAGATGTGTGAGGAATTATTGAAGCTCGGGTAAGCTTTTGAATGGTTGCTACTGATTAAATAATCAAGCTTTAGGCGAGGTGCAAATTTGGAAATTGATATGAAGTCAATATTACCAAGCCGCAAAACAGTAAAAAATAAGCTTATGGAGTGTCTAGAACTGGAAATTGAGAATATTCGAAGAATGGTATTTTCGAATGTCTCGAAAAAATTTTTTATTGATGTCATTTCAGTTGGAACCTGCTGTCAAGTCTTCCTCGATTTCTTTCATGTTAGATTTCGGAAAAGTTTACGATAATTTTTTGGCTATCAAAGCAAGTTATCTATTGGAACGTGCAAATGAGAATGTCCAATTGCGTCTATACGAAATTTATGAGCAACGGCAAAAAATTTGTAACTGAAATGAAGCAGATTGTAAATACTGATGAAGGCTAATAAAAAACACATGATAAAACATAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAATGAGGCAAGAAAATATG</pcr_primer_p1>
		<pcr_primer_p2>CTTCAATAATTCCTCACACATCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACAAATGAGGCAAGAAAATATGAAAAAAATACCTTTATATTCATAAAAATCATACAGTTTCGATTTTATTTACCAATGTTTCAGAAAACATGCTGATATCTGCAGAAACAGAAACGCAGTAGAAAAACTAGCCACTACTACGAAAGCTGATGTGACGCATGTGTTGTCTAAATACTTTGCACGTTCTTCAAAACCTCTGCATTTTCTAGAATGCTCAGACTTTCGCAAGATGTGTGAGGAATTATTGAAG</canonical_amplicon>
		<polymorphic_amplicon>ACAAATGAGGCAAGAAAATATGAAAAAAATACCTTTATATTCATAAAAATCATACAGTTTCGATTTTATTTACCAATGTTTCAGAAAACATGCTGATATCTGCAGAAACAGAAACGCAGTAGAAAAACTAGCCACTACTACGAAAGCTGATGTGACGCATGTGTTGTCTAAATACTTTGCACGTWCTTCAAAACCTCTGCATTTTCTAGAATGCTCAGACTTTCGCAAGATGTGTGAGGAATTATTGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24642</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>343737</contig_pos>
        <strand>+</strand>
        <context>TCTAGAATGC[C/T]CAGACTTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTCTAAATACTTTGCACGTTCTTCAAAACCTCTGCATTTTCTAGAATGC</left_flank>
        <right_flank>CAGACTTTCGCAAGATGTGTGAGGAATTATTGAAGCTCGGGTAAGCTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGTTTTTTGGCTTAATTTTAATCGTTTTTTGCCAAAGTTGTCTCGTTTTATTTAAAAAATGGAAGATTTTACAATGAAAGGAGAGATGGAAGGTGTTCGATTTCAGAAAGTGAGTAAAAATAGAACGTTTCGCTGAAAAGAACAATTTCCAGGTTAATCTTGTCGGCAAGATGAATTCGTTTTTTAAAAGAATCGAAATCGAAACTGTGGGAAGCATAAAATTTTTATCAACCAATTTTGTTGTCTGTGTCCAGTGCAACAAGGTCTTTACTGACGGCGGAGGACAAATGAGGCAAGAAAATATGAAAAAAATACCTTTATATTCATAAAAATCATACAGTTTCGATTTTATTTACCAATGTTTCAGAAAACATGCTGATATCTGCAGAAACAGAAACGCAGTAGAAAAACTAGCCACTACTACGAAAGCTGATGTGACGCATGTGTTGTCTAAATACTTTGCACGTTCTTCAAAACCTCTGCATTTTCTAGAATGCTCAGACTTTCGCAAGATGTGTGAGGAATTATTGAAGCTCGGGTAAGCTTTTGAATGGTTGCTACTGATTAAATAATCAAGCTTTAGGCGAGGTGCAAATTTGGAAATTGATATGAAGTCAATATTACCAAGCCGCAAAACAGTAAAAAATAAGCTTATGGAGTGTCTAGAACTGGAAATTGAGAATATTCGAAGAATGGTATTTTCGAATGTCTCGAAAAAATTTTTTATTGATGTCATTTCAGTTGGAACCTGCTGTCAAGTCTTCCTCGATTTCTTTCATGTTAGATTTCGGAAAAGTTTACGATAATTTTTTGGCTATCAAAGCAAGTTATCTATTGGAACGTGCAAATGAGAATGTCCAATTGCGTCTATACGAAATTTATGAGCAACGGCAAAAAATTTGTAACTGAAATGAAGCAGATTGTAAATACTGATGAAGGCTAATAAAAAACACATGATAAAACATAATATCAGGCATTGTCAAGTGAAAAGTATGGTC</canonical>
            <polymorphic>ATTGTTTTTTGGCTTAATTTTAATCGTTTTTTGCCAAAGTTGTCTCGTTTTATTTAAAAAATGGAAGATTTTACAATGAAAGGAGAGATGGAAGGTGTTCGATTTCAGAAAGTGAGTAAAAATAGAACGTTTCGCTGAAAAGAACAATTTCCAGGTTAATCTTGTCGGCAAGATGAATTCGTTTTTTAAAAGAATCGAAATCGAAACTGTGGGAAGCATAAAATTTTTATCAACCAATTTTGTTGTCTGTGTCCAGTGCAACAAGGTCTTTACTGACGGCGGAGGACAAATGAGGCAAGAAAATATGAAAAAAATACCTTTATATTCATAAAAATCATACAGTTTCGATTTTATTTACCAATGTTTCAGAAAACATGCTGATATCTGCAGAAACAGAAACGCAGTAGAAAAACTAGCCACTACTACGAAAGCTGATGTGACGCATGTGTTGTCTAAATACTTTGCACGTTCTTCAAAACCTCTGCATTTTCTAGAATGCYCAGACTTTCGCAAGATGTGTGAGGAATTATTGAAGCTCGGGTAAGCTTTTGAATGGTTGCTACTGATTAAATAATCAAGCTTTAGGCGAGGTGCAAATTTGGAAATTGATATGAAGTCAATATTACCAAGCCGCAAAACAGTAAAAAATAAGCTTATGGAGTGTCTAGAACTGGAAATTGAGAATATTCGAAGAATGGTATTTTCGAATGTCTCGAAAAAATTTTTTATTGATGTCATTTCAGTTGGAACCTGCTGTCAAGTCTTCCTCGATTTCTTTCATGTTAGATTTCGGAAAAGTTTACGATAATTTTTTGGCTATCAAAGCAAGTTATCTATTGGAACGTGCAAATGAGAATGTCCAATTGCGTCTATACGAAATTTATGAGCAACGGCAAAAAATTTGTAACTGAAATGAAGCAGATTGTAAATACTGATGAAGGCTAATAAAAAACACATGATAAAACATAATATCAGGCATTGTCAAGTGAAAAGTATGGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>290 261 208 134 107</canonical_bands>
                <polymorphic_bands>424 261 208 107</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTTCGATTTTATTTACCAATG</pcr_primer_p1>
		<pcr_primer_p2>TCGCCTAAAGCTTGATTATTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGTTTCGATTTTATTTACCAATGTTTCAGAAAACATGCTGATATCTGCAGAAACAGAAACGCAGTAGAAAAACTAGCCACTACTACGAAAGCTGATGTGACGCATGTGTTGTCTAAATACTTTGCACGTTCTTCAAAACCTCTGCATTTTCTAGAATGCTCAGACTTTCGCAAGATGTGTGAGGAATTATTGAAGCTCGGGTAAGCTTTTGAATGGTTGCTACTGATTAAATAATCAAGCTTTAGGCGA</canonical_amplicon>
		<polymorphic_amplicon>AGTTTCGATTTTATTTACCAATGTTTCAGAAAACATGCTGATATCTGCAGAAACAGAAACGCAGTAGAAAAACTAGCCACTACTACGAAAGCTGATGTGACGCATGTGTTGTCTAAATACTTTGCACGTTCTTCAAAACCTCTGCATTTTCTAGAATGCYCAGACTTTCGCAAGATGTGTGAGGAATTATTGAAGCTCGGGTAAGCTTTTGAATGGTTGCTACTGATTAAATAATCAAGCTTTAGGCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24643</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>343877</contig_pos>
        <strand>+</strand>
        <context>GCCGCAAAAC[A/T]GTAAAAAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTGCAAATTTGGAAATTGATATGAAGTCAATATTACCAAGCCGCAAAAC</left_flank>
        <right_flank>GTAAAAAATAAGCTTATGGAGTGTCTAGAACTGGAAATTGAGAATATTCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAACAATTTCCAGGTTAATCTTGTCGGCAAGATGAATTCGTTTTTTAAAAGAATCGAAATCGAAACTGTGGGAAGCATAAAATTTTTATCAACCAATTTTGTTGTCTGTGTCCAGTGCAACAAGGTCTTTACTGACGGCGGAGGACAAATGAGGCAAGAAAATATGAAAAAAATACCTTTATATTCATAAAAATCATACAGTTTCGATTTTATTTACCAATGTTTCAGAAAACATGCTGATATCTGCAGAAACAGAAACGCAGTAGAAAAACTAGCCACTACTACGAAAGCTGATGTGACGCATGTGTTGTCTAAATACTTTGCACGTTCTTCAAAACCTCTGCATTTTCTAGAATGCTCAGACTTTCGCAAGATGTGTGAGGAATTATTGAAGCTCGGGTAAGCTTTTGAATGGTTGCTACTGATTAAATAATCAAGCTTTAGGCGAGGTGCAAATTTGGAAATTGATATGAAGTCAATATTACCAAGCCGCAAAACAGTAAAAAATAAGCTTATGGAGTGTCTAGAACTGGAAATTGAGAATATTCGAAGAATGGTATTTTCGAATGTCTCGAAAAAATTTTTTATTGATGTCATTTCAGTTGGAACCTGCTGTCAAGTCTTCCTCGATTTCTTTCATGTTAGATTTCGGAAAAGTTTACGATAATTTTTTGGCTATCAAAGCAAGTTATCTATTGGAACGTGCAAATGAGAATGTCCAATTGCGTCTATACGAAATTTATGAGCAACGGCAAAAAATTTGTAACTGAAATGAAGCAGATTGTAAATACTGATGAAGGCTAATAAAAAACACATGATAAAACATAATATCAGGCATTGTCAAGTGAAAAGTATGGTCTGAAACAATATGTTCCGACGCGATGGTTTAGTGAATTCGATTGTGTCGAATCGGTTATGCAAAGTATCGATAGTCTTACTATGGCAGTTGATAATTTTCCAAAAGAAGCGTCTAATTATTTGAATGAACTGTCAAAAATC</canonical>
            <polymorphic>AGAACAATTTCCAGGTTAATCTTGTCGGCAAGATGAATTCGTTTTTTAAAAGAATCGAAATCGAAACTGTGGGAAGCATAAAATTTTTATCAACCAATTTTGTTGTCTGTGTCCAGTGCAACAAGGTCTTTACTGACGGCGGAGGACAAATGAGGCAAGAAAATATGAAAAAAATACCTTTATATTCATAAAAATCATACAGTTTCGATTTTATTTACCAATGTTTCAGAAAACATGCTGATATCTGCAGAAACAGAAACGCAGTAGAAAAACTAGCCACTACTACGAAAGCTGATGTGACGCATGTGTTGTCTAAATACTTTGCACGTTCTTCAAAACCTCTGCATTTTCTAGAATGCTCAGACTTTCGCAAGATGTGTGAGGAATTATTGAAGCTCGGGTAAGCTTTTGAATGGTTGCTACTGATTAAATAATCAAGCTTTAGGCGAGGTGCAAATTTGGAAATTGATATGAAGTCAATATTACCAAGCCGCAAAACWGTAAAAAATAAGCTTATGGAGTGTCTAGAACTGGAAATTGAGAATATTCGAAGAATGGTATTTTCGAATGTCTCGAAAAAATTTTTTATTGATGTCATTTCAGTTGGAACCTGCTGTCAAGTCTTCCTCGATTTCTTTCATGTTAGATTTCGGAAAAGTTTACGATAATTTTTTGGCTATCAAAGCAAGTTATCTATTGGAACGTGCAAATGAGAATGTCCAATTGCGTCTATACGAAATTTATGAGCAACGGCAAAAAATTTGTAACTGAAATGAAGCAGATTGTAAATACTGATGAAGGCTAATAAAAAACACATGATAAAACATAATATCAGGCATTGTCAAGTGAAAAGTATGGTCTGAAACAATATGTTCCGACGCGATGGTTTAGTGAATTCGATTGTGTCGAATCGGTTATGCAAAGTATCGATAGTCTTACTATGGCAGTTGATAATTTTCCAAAAGAAGCGTCTAATTATTTGAATGAACTGTCAAAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATGGTTGCTACTGATTAAA</pcr_primer_p1>
		<pcr_primer_p2>ACTTTTCCGAAATCTAACATGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAATGGTTGCTACTGATTAAATAATCAAGCTTTAGGCGAGGTGCAAATTTGGAAATTGATATGAAGTCAATATTACCAAGCCGCAAAACAGTAAAAAATAAGCTTATGGAGTGTCTAGAACTGGAAATTGAGAATATTCGAAGAATGGTATTTTCGAATGTCTCGAAAAAATTTTTTATTGATGTCATTTCAGTTGGAACCTGCTGTCAAGTCTTCCTCGATTTCTTTCATGTTAGATTTCGGAAAAGT</canonical_amplicon>
		<polymorphic_amplicon>TGAATGGTTGCTACTGATTAAATAATCAAGCTTTAGGCGAGGTGCAAATTTGGAAATTGATATGAAGTCAATATTACCAAGCCGCAAAACWGTAAAAAATAAGCTTATGGAGTGTCTAGAACTGGAAATTGAGAATATTCGAAGAATGGTATTTTCGAATGTCTCGAAAAAATTTTTTATTGATGTCATTTCAGTTGGAACCTGCTGTCAAGTCTTCCTCGATTTCTTTCATGTTAGATTTCGGAAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24644</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>343971</contig_pos>
        <strand></strand>
        <context>TTTTATTGAT[G/A]RCATTTCAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATATTCGAAGAATGGTATTTTCGAATGTCTCGAAAAAATTTTTTATTGAT</left_flank>
        <right_flank>TCATTTCAGTTGGAACCTGCTGTCAAGTCTTCCTCGATTTCTTTCATGTT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTTTGTTGTCTGTGTCCAGTGCAACAAGGTCTTTACTGACGGCGGAGGACAAATGAGGCAAGAAAATATGAAAAAAATACCTTTATATTCATAAAAATCATACAGTTTCGATTTTATTTACCAATGTTTCAGAAAACATGCTGATATCTGCAGAAACAGAAACGCAGTAGAAAAACTAGCCACTACTACGAAAGCTGATGTGACGCATGTGTTGTCTAAATACTTTGCACGTTCTTCAAAACCTCTGCATTTTCTAGAATGCTCAGACTTTCGCAAGATGTGTGAGGAATTATTGAAGCTCGGGTAAGCTTTTGAATGGTTGCTACTGATTAAATAATCAAGCTTTAGGCGAGGTGCAAATTTGGAAATTGATATGAAGTCAATATTACCAAGCCGCAAAACAGTAAAAAATAAGCTTATGGAGTGTCTAGAACTGGAAATTGAGAATATTCGAAGAATGGTATTTTCGAATGTCTCGAAAAAATTTTTTATTGATGTCATTTCAGTTGGAACCTGCTGTCAAGTCTTCCTCGATTTCTTTCATGTTAGATTTCGGAAAAGTTTACGATAATTTTTTGGCTATCAAAGCAAGTTATCTATTGGAACGTGCAAATGAGAATGTCCAATTGCGTCTATACGAAATTTATGAGCAACGGCAAAAAATTTGTAACTGAAATGAAGCAGATTGTAAATACTGATGAAGGCTAATAAAAAACACATGATAAAACATAATATCAGGCATTGTCAAGTGAAAAGTATGGTCTGAAACAATATGTTCCGACGCGATGGTTTAGTGAATTCGATTGTGTCGAATCGGTTATGCAAAGTATCGATAGTCTTACTATGGCAGTTGATAATTTTCCAAAAGAAGCGTCTAATTATTTGAATGAACTGTCAAAAATCGAAAGCCGAGTTCTTTTCAAAGAATTGTCACAAGTTATTCAGCCCTTAAAGGAATGTAGTAAATACTTTCAGGTATAGATTATTTATTTATTAA</canonical>
            <polymorphic>CAATTTTGTTGTCTGTGTCCAGTGCAACAAGGTCTTTACTGACGGCGGAGGACAAATGAGGCAAGAAAATATGAAAAAAATACCTTTATATTCATAAAAATCATACAGTTTCGATTTTATTTACCAATGTTTCAGAAAACATGCTGATATCTGCAGAAACAGAAACGCAGTAGAAAAACTAGCCACTACTACGAAAGCTGATGTGACGCATGTGTTGTCTAAATACTTTGCACGTTCTTCAAAACCTCTGCATTTTCTAGAATGCTCAGACTTTCGCAAGATGTGTGAGGAATTATTGAAGCTCGGGTAAGCTTTTGAATGGTTGCTACTGATTAAATAATCAAGCTTTAGGCGAGGTGCAAATTTGGAAATTGATATGAAGTCAATATTACCAAGCCGCAAAACAGTAAAAAATAAGCTTATGGAGTGTCTAGAACTGGAAATTGAGAATATTCGAAGAATGGTATTTTCGAATGTCTCGAAAAAATTTTTTATTGATRTCATTTCAGTTGGAACCTGCTGTCAAGTCTTCCTCGATTTCTTTCATGTTAGATTTCGGAAAAGTTTACGATAATTTTTTGGCTATCAAAGCAAGTTATCTATTGGAACGTGCAAATGAGAATGTCCAATTGCGTCTATACGAAATTTATGAGCAACGGCAAAAAATTTGTAACTGAAATGAAGCAGATTGTAAATACTGATGAAGGCTAATAAAAAACACATGATAAAACATAATATCAGGCATTGTCAAGTGAAAAGTATGGTCTGAAACAATATGTTCCGACGCGATGGTTTAGTGAATTCGATTGTGTCGAATCGGTTATGCAAAGTATCGATAGTCTTACTATGGCAGTTGATAATTTTCCAAAAGAAGCGTCTAATTATTTGAATGAACTGTCAAAAATCGAAAGCCGAGTTCTTTTCAAAGAATTGTCACAAGTTATTCAGCCCTTAAAGGAATGTAGTAAATACTTTCAGGTATAGATTATTTATTTATTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGAATATTCGAAGAATGGTA</pcr_primer_p1>
		<pcr_primer_p2>ACAATCTGCTTCATTTCAGTTAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGAGAATATTCGAAGAATGGTATTTTCGAATGTCTCGAAAAAATTTTTTATTGATGTCATTTCAGTTGGAACCTGCTGTCAAGTCTTCCTCGATTTCTTTCATGTTAGATTTCGGAAAAGTTTACGATAATTTTTTGGCTATCAAAGCAAGTTATCTATTGGAACGTGCAAATGAGAATGTCCAATTGCGTCTATACGAAATTTATGAGCAACGGCAAAAAATTTGTAACTGAAATGAAGCAGATTGT</canonical_amplicon>
		<polymorphic_amplicon>TTGAGAATATTCGAAGAATGGTATTTTCGAATGTCTCGAAAAAATTTTTTATTGATRTCATTTCAGTTGGAACCTGCTGTCAAGTCTTCCTCGATTTCTTTCATGTTAGATTTCGGAAAAGTTTACGATAATTTTTTGGCTATCAAAGCAAGTTATCTATTGGAACGTGCAAATGAGAATGTCCAATTGCGTCTATACGAAATTTATGAGCAACGGCAAAAAATTTGTAACTGAAATGAAGCAGATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24645</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>343972</contig_pos>
        <strand>+</strand>
        <context>TTTATTGATR[A/G]CATTTCAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTCGAAGAATGGTATTTTCGAATGTCTCGAAAAAATTTTTTATTGATG</left_flank>
        <right_flank>CATTTCAGTTGGAACCTGCTGTCAAGTCTTCCTCGATTTCTTTCATGTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTGTTGTCTGTGTCCAGTGCAACAAGGTCTTTACTGACGGCGGAGGACAAATGAGGCAAGAAAATATGAAAAAAATACCTTTATATTCATAAAAATCATACAGTTTCGATTTTATTTACCAATGTTTCAGAAAACATGCTGATATCTGCAGAAACAGAAACGCAGTAGAAAAACTAGCCACTACTACGAAAGCTGATGTGACGCATGTGTTGTCTAAATACTTTGCACGTTCTTCAAAACCTCTGCATTTTCTAGAATGCTCAGACTTTCGCAAGATGTGTGAGGAATTATTGAAGCTCGGGTAAGCTTTTGAATGGTTGCTACTGATTAAATAATCAAGCTTTAGGCGAGGTGCAAATTTGGAAATTGATATGAAGTCAATATTACCAAGCCGCAAAACAGTAAAAAATAAGCTTATGGAGTGTCTAGAACTGGAAATTGAGAATATTCGAAGAATGGTATTTTCGAATGTCTCGAAAAAATTTTTTATTGATGTCATTTCAGTTGGAACCTGCTGTCAAGTCTTCCTCGATTTCTTTCATGTTAGATTTCGGAAAAGTTTACGATAATTTTTTGGCTATCAAAGCAAGTTATCTATTGGAACGTGCAAATGAGAATGTCCAATTGCGTCTATACGAAATTTATGAGCAACGGCAAAAAATTTGTAACTGAAATGAAGCAGATTGTAAATACTGATGAAGGCTAATAAAAAACACATGATAAAACATAATATCAGGCATTGTCAAGTGAAAAGTATGGTCTGAAACAATATGTTCCGACGCGATGGTTTAGTGAATTCGATTGTGTCGAATCGGTTATGCAAAGTATCGATAGTCTTACTATGGCAGTTGATAATTTTCCAAAAGAAGCGTCTAATTATTTGAATGAACTGTCAAAAATCGAAAGCCGAGTTCTTTTCAAAGAATTGTCACAAGTTATTCAGCCCTTAAAGGAATGTAGTAAATACTTTCAGGTATAGATTATTTATTTATTAAA</canonical>
            <polymorphic>AATTTTGTTGTCTGTGTCCAGTGCAACAAGGTCTTTACTGACGGCGGAGGACAAATGAGGCAAGAAAATATGAAAAAAATACCTTTATATTCATAAAAATCATACAGTTTCGATTTTATTTACCAATGTTTCAGAAAACATGCTGATATCTGCAGAAACAGAAACGCAGTAGAAAAACTAGCCACTACTACGAAAGCTGATGTGACGCATGTGTTGTCTAAATACTTTGCACGTTCTTCAAAACCTCTGCATTTTCTAGAATGCTCAGACTTTCGCAAGATGTGTGAGGAATTATTGAAGCTCGGGTAAGCTTTTGAATGGTTGCTACTGATTAAATAATCAAGCTTTAGGCGAGGTGCAAATTTGGAAATTGATATGAAGTCAATATTACCAAGCCGCAAAACAGTAAAAAATAAGCTTATGGAGTGTCTAGAACTGGAAATTGAGAATATTCGAAGAATGGTATTTTCGAATGTCTCGAAAAAATTTTTTATTGATGRCATTTCAGTTGGAACCTGCTGTCAAGTCTTCCTCGATTTCTTTCATGTTAGATTTCGGAAAAGTTTACGATAATTTTTTGGCTATCAAAGCAAGTTATCTATTGGAACGTGCAAATGAGAATGTCCAATTGCGTCTATACGAAATTTATGAGCAACGGCAAAAAATTTGTAACTGAAATGAAGCAGATTGTAAATACTGATGAAGGCTAATAAAAAACACATGATAAAACATAATATCAGGCATTGTCAAGTGAAAAGTATGGTCTGAAACAATATGTTCCGACGCGATGGTTTAGTGAATTCGATTGTGTCGAATCGGTTATGCAAAGTATCGATAGTCTTACTATGGCAGTTGATAATTTTCCAAAAGAAGCGTCTAATTATTTGAATGAACTGTCAAAAATCGAAAGCCGAGTTCTTTTCAAAGAATTGTCACAAGTTATTCAGCCCTTAAAGGAATGTAGTAAATACTTTCAGGTATAGATTATTTATTTATTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGAATATTCGAAGAATGGTA</pcr_primer_p1>
		<pcr_primer_p2>ACAATCTGCTTCATTTCAGTTAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGAGAATATTCGAAGAATGGTATTTTCGAATGTCTCGAAAAAATTTTTTATTGATGTCATTTCAGTTGGAACCTGCTGTCAAGTCTTCCTCGATTTCTTTCATGTTAGATTTCGGAAAAGTTTACGATAATTTTTTGGCTATCAAAGCAAGTTATCTATTGGAACGTGCAAATGAGAATGTCCAATTGCGTCTATACGAAATTTATGAGCAACGGCAAAAAATTTGTAACTGAAATGAAGCAGATTGT</canonical_amplicon>
		<polymorphic_amplicon>TTGAGAATATTCGAAGAATGGTATTTTCGAATGTCTCGAAAAAATTTTTTATTGATGRCATTTCAGTTGGAACCTGCTGTCAAGTCTTCCTCGATTTCTTTCATGTTAGATTTCGGAAAAGTTTACGATAATTTTTTGGCTATCAAAGCAAGTTATCTATTGGAACGTGCAAATGAGAATGTCCAATTGCGTCTATACGAAATTTATGAGCAACGGCAAAAAATTTGTAACTGAAATGAAGCAGATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24646</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>344056</contig_pos>
        <strand>+</strand>
        <context>TTTTTTGGCT[A/T]TCAAAGCAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGATTTCTTTCATGTTAGATTTCGGAAAAGTTTACGATAATTTTTTGGCT</left_flank>
        <right_flank>TCAAAGCAAGTTATCTATTGGAACGTGCAAATGAGAATGTCCAATTGCGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATATTCATAAAAATCATACAGTTTCGATTTTATTTACCAATGTTTCAGAAAACATGCTGATATCTGCAGAAACAGAAACGCAGTAGAAAAACTAGCCACTACTACGAAAGCTGATGTGACGCATGTGTTGTCTAAATACTTTGCACGTTCTTCAAAACCTCTGCATTTTCTAGAATGCTCAGACTTTCGCAAGATGTGTGAGGAATTATTGAAGCTCGGGTAAGCTTTTGAATGGTTGCTACTGATTAAATAATCAAGCTTTAGGCGAGGTGCAAATTTGGAAATTGATATGAAGTCAATATTACCAAGCCGCAAAACAGTAAAAAATAAGCTTATGGAGTGTCTAGAACTGGAAATTGAGAATATTCGAAGAATGGTATTTTCGAATGTCTCGAAAAAATTTTTTATTGATGTCATTTCAGTTGGAACCTGCTGTCAAGTCTTCCTCGATTTCTTTCATGTTAGATTTCGGAAAAGTTTACGATAATTTTTTGGCTATCAAAGCAAGTTATCTATTGGAACGTGCAAATGAGAATGTCCAATTGCGTCTATACGAAATTTATGAGCAACGGCAAAAAATTTGTAACTGAAATGAAGCAGATTGTAAATACTGATGAAGGCTAATAAAAAACACATGATAAAACATAATATCAGGCATTGTCAAGTGAAAAGTATGGTCTGAAACAATATGTTCCGACGCGATGGTTTAGTGAATTCGATTGTGTCGAATCGGTTATGCAAAGTATCGATAGTCTTACTATGGCAGTTGATAATTTTCCAAAAGAAGCGTCTAATTATTTGAATGAACTGTCAAAAATCGAAAGCCGAGTTCTTTTCAAAGAATTGTCACAAGTTATTCAGCCCTTAAAGGAATGTAGTAAATACTTTCAGGTATAGATTATTTATTTATTAAAAAAACCATATTTTTAAAGCCAATAGATCACAATCCAAGATGTTGTGCCATTCTATTTATCACTTCTAGATGAATACCAAGAACA</canonical>
            <polymorphic>TTATATTCATAAAAATCATACAGTTTCGATTTTATTTACCAATGTTTCAGAAAACATGCTGATATCTGCAGAAACAGAAACGCAGTAGAAAAACTAGCCACTACTACGAAAGCTGATGTGACGCATGTGTTGTCTAAATACTTTGCACGTTCTTCAAAACCTCTGCATTTTCTAGAATGCTCAGACTTTCGCAAGATGTGTGAGGAATTATTGAAGCTCGGGTAAGCTTTTGAATGGTTGCTACTGATTAAATAATCAAGCTTTAGGCGAGGTGCAAATTTGGAAATTGATATGAAGTCAATATTACCAAGCCGCAAAACAGTAAAAAATAAGCTTATGGAGTGTCTAGAACTGGAAATTGAGAATATTCGAAGAATGGTATTTTCGAATGTCTCGAAAAAATTTTTTATTGATGTCATTTCAGTTGGAACCTGCTGTCAAGTCTTCCTCGATTTCTTTCATGTTAGATTTCGGAAAAGTTTACGATAATTTTTTGGCTWTCAAAGCAAGTTATCTATTGGAACGTGCAAATGAGAATGTCCAATTGCGTCTATACGAAATTTATGAGCAACGGCAAAAAATTTGTAACTGAAATGAAGCAGATTGTAAATACTGATGAAGGCTAATAAAAAACACATGATAAAACATAATATCAGGCATTGTCAAGTGAAAAGTATGGTCTGAAACAATATGTTCCGACGCGATGGTTTAGTGAATTCGATTGTGTCGAATCGGTTATGCAAAGTATCGATAGTCTTACTATGGCAGTTGATAATTTTCCAAAAGAAGCGTCTAATTATTTGAATGAACTGTCAAAAATCGAAAGCCGAGTTCTTTTCAAAGAATTGTCACAAGTTATTCAGCCCTTAAAGGAATGTAGTAAATACTTTCAGGTATAGATTATTTATTTATTAAAAAAACCATATTTTTAAAGCCAATAGATCACAATCCAAGATGTTGTGCCATTCTATTTATCACTTCTAGATGAATACCAAGAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGAATATTCGAAGAATGGTA</pcr_primer_p1>
		<pcr_primer_p2>ACAATCTGCTTCATTTCAGTTAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGAGAATATTCGAAGAATGGTATTTTCGAATGTCTCGAAAAAATTTTTTATTGATGTCATTTCAGTTGGAACCTGCTGTCAAGTCTTCCTCGATTTCTTTCATGTTAGATTTCGGAAAAGTTTACGATAATTTTTTGGCTATCAAAGCAAGTTATCTATTGGAACGTGCAAATGAGAATGTCCAATTGCGTCTATACGAAATTTATGAGCAACGGCAAAAAATTTGTAACTGAAATGAAGCAGATTGT</canonical_amplicon>
		<polymorphic_amplicon>TTGAGAATATTCGAAGAATGGTATTTTCGAATGTCTCGAAAAAATTTTTTATTGATGTCATTTCAGTTGGAACCTGCTGTCAAGTCTTCCTCGATTTCTTTCATGTTAGATTTCGGAAAAGTTTACGATAATTTTTTGGCTWTCAAAGCAAGTTATCTATTGGAACGTGCAAATGAGAATGTCCAATTGCGTCTATACGAAATTTATGAGCAACGGCAAAAAATTTGTAACTGAAATGAAGCAGATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24647</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>363433</contig_pos>
        <strand>+</strand>
        <context>TTTAATTTTG[C/G]AAYAAGCTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CATCTGAATATTAGTGAGCTACAGTAATCCAACATAACAATTTAATTTTG</left_flank>
        <right_flank>AACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAACTACAATAATTGAACATTCACCCAAAATTTTCAATTATTTTTTCAAAATGTGAATTTTCAAATTTCCGTCTGATCTTACCTCCCAATGGTACTCAACAAGTTTGACTGGAACTCCTTTTTGCACGGACCATCACATCTGGCCGTGACAGGTGTCGGTGGACCGCCTGGATTTTCGAATTGTTATGATTTTTATGAAATTGCTAAAAAAATTTCCGAAAAATTCTCGGTTCCCAAAACTCAAATTATGTTAGCCGATTAAATTTAAACTAGTTGTTATATCATGAACTTTAAAAATTCAATTTTTTTCAAAAAAGTTTTCCTCACCCAAAGAAAGACTAGAAGAGATCTTTCGAGCCAGCTGAGAAGCTTCGCGAATTTTCGAAAACTTGGAATCACAATCCGAATCTCCATCTTCCTCCCAAGAGATAGCGTAGGTGTAGGTGCATCTGAATATTAGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATGAAGATTTTGA</canonical>
            <polymorphic>TCAAAACTACAATAATTGAACATTCACCCAAAATTTTCAATTATTTTTTCAAAATGTGAATTTTCAAATTTCCGTCTGATCTTACCTCCCAATGGTACTCAACAAGTTTGACTGGAACTCCTTTTTGCACGGACCATCACATCTGGCCGTGACAGGTGTCGGTGGACCGCCTGGATTTTCGAATTGTTATGATTTTTATGAAATTGCTAAAAAAATTTCCGAAAAATTCTCGGTTCCCAAAACTCAAATTATGTTAGCCGATTAAATTTAAACTAGTTGTTATATCATGAACTTTAAAAATTCAATTTTTTTCAAAAAAGTTTTCCTCACCCAAAGAAAGACTAGAAGAGATCTTTCGAGCCAGCTGAGAAGCTTCGCGAATTTTCGAAAACTTGGAATCACAATCCGAATCTCCATCTTCCTCCCAAGAGATAGCGTAGGTGTAGGTGCATCTGAATATTAGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGSAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATGAAGATTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCAAAGAAAGACTAGAAGAGAT</pcr_primer_p1>
		<pcr_primer_p2>GTTTTCTGATTTTTCCGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CCCAAAGAAAGACTAGAAGAGATCTTTCGAGCCAGCTGAGAAGCTTCGCGAATTTTCGAAAACTTGGAATCACAATCCGAATCTCCATCTTCCTCCCAAGAGATAGCGTAGGTGTAGGTGCATCTGAATATTAGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAAC</canonical_amplicon>
		<polymorphic_amplicon>CCCAAAGAAAGACTAGAAGAGATCTTTCGAGCCAGCTGAGAAGCTTCGCGAATTTTCGAAAACTTGGAATCACAATCCGAATCTCCATCTTCCTCCCAAGAGATAGCGTAGGTGTAGGTGCATCTGAATATTAGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGSAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24648</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>363535</contig_pos>
        <strand>+</strand>
        <context>AAATGGAAAA[A/C]TTCCAGGATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAA</left_flank>
        <right_flank>TTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAGTTTGACTGGAACTCCTTTTTGCACGGACCATCACATCTGGCCGTGACAGGTGTCGGTGGACCGCCTGGATTTTCGAATTGTTATGATTTTTATGAAATTGCTAAAAAAATTTCCGAAAAATTCTCGGTTCCCAAAACTCAAATTATGTTAGCCGATTAAATTTAAACTAGTTGTTATATCATGAACTTTAAAAATTCAATTTTTTTCAAAAAAGTTTTCCTCACCCAAAGAAAGACTAGAAGAGATCTTTCGAGCCAGCTGAGAAGCTTCGCGAATTTTCGAAAACTTGGAATCACAATCCGAATCTCCATCTTCCTCCCAAGAGATAGCGTAGGTGTAGGTGCATCTGAATATTAGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATGAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGTCTTCGAAAAGTGTCTCGATTTGACGAATTGAGAACGATTTTTAATTGGTTGGAAGTCTTTTGAAAATAGTTG</canonical>
            <polymorphic>CAAGTTTGACTGGAACTCCTTTTTGCACGGACCATCACATCTGGCCGTGACAGGTGTCGGTGGACCGCCTGGATTTTCGAATTGTTATGATTTTTATGAAATTGCTAAAAAAATTTCCGAAAAATTCTCGGTTCCCAAAACTCAAATTATGTTAGCCGATTAAATTTAAACTAGTTGTTATATCATGAACTTTAAAAATTCAATTTTTTTCAAAAAAGTTTTCCTCACCCAAAGAAAGACTAGAAGAGATCTTTCGAGCCAGCTGAGAAGCTTCGCGAATTTTCGAAAACTTGGAATCACAATCCGAATCTCCATCTTCCTCCCAAGAGATAGCGTAGGTGTAGGTGCATCTGAATATTAGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAMTTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATGAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGTCTTCGAAAAGTGTCTCGATTTGACGAATTGAGAACGATTTTTAATTGGTTGGAAGTCTTTTGAAAATAGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>502 221 111 81 40 34 11</canonical_bands>
                <polymorphic_bands>723 111 81 40 34 11</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>230 108 108 90 79 77 76 34 32 30 22 20 18 17 15 12 11 11 5 5</canonical_bands>
                <polymorphic_bands>230 119 108 90 79 77 76 34 32 30 22 20 18 17 15 12 11 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTGAGCTACAGTAATCCAACAT</pcr_primer_p1>
		<pcr_primer_p2>AATGCTGTTATCCATAGAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATT</canonical_amplicon>
		<polymorphic_amplicon>AGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAMTTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24649</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>363610</contig_pos>
        <strand></strand>
        <context>GACAAACTAG[G/A]AAAAAARCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAG</left_flank>
        <right_flank>AAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGAATTGTTATGATTTTTATGAAATTGCTAAAAAAATTTCCGAAAAATTCTCGGTTCCCAAAACTCAAATTATGTTAGCCGATTAAATTTAAACTAGTTGTTATATCATGAACTTTAAAAATTCAATTTTTTTCAAAAAAGTTTTCCTCACCCAAAGAAAGACTAGAAGAGATCTTTCGAGCCAGCTGAGAAGCTTCGCGAATTTTCGAAAACTTGGAATCACAATCCGAATCTCCATCTTCCTCCCAAGAGATAGCGTAGGTGTAGGTGCATCTGAATATTAGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATGAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGTCTTCGAAAAGTGTCTCGATTTGACGAATTGAGAACGATTTTTAATTGGTTGGAAGTCTTTTGAAAATAGTTGGCAAGGCGTTTGAATTCAAAAAAAAAGAAGAATCTACGAAGATAGAAATTAGGAGAAGAGACAAAAAATGAATTT</canonical>
            <polymorphic>TTCGAATTGTTATGATTTTTATGAAATTGCTAAAAAAATTTCCGAAAAATTCTCGGTTCCCAAAACTCAAATTATGTTAGCCGATTAAATTTAAACTAGTTGTTATATCATGAACTTTAAAAATTCAATTTTTTTCAAAAAAGTTTTCCTCACCCAAAGAAAGACTAGAAGAGATCTTTCGAGCCAGCTGAGAAGCTTCGCGAATTTTCGAAAACTTGGAATCACAATCCGAATCTCCATCTTCCTCCCAAGAGATAGCGTAGGTGTAGGTGCATCTGAATATTAGTGAGCTACAGTAATCCAACATAACAATTTAATTTTGAAACAAGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGRAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATGAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGTCTTCGAAAAGTGTCTCGATTTGACGAATTGAGAACGATTTTTAATTGGTTGGAAGTCTTTTGAAAATAGTTGGCAAGGCGTTTGAATTCAAAAAAAAAGAAGAATCTACGAAGATAGAAATTAGGAGAAGAGACAAAAAATGAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTTATTTATTTTTGAAATCTCC</pcr_primer_p1>
		<pcr_primer_p2>TGTAGTGATAATGGGGTTACTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACA</canonical_amplicon>
		<polymorphic_amplicon>AGCTTATTTATTTTTGAAATCTCCACCTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGRAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24650</snp_id>
        <super_contig>c000900821.Contig2</super_contig>
        <contig_pos>363963</contig_pos>
        <strand>+</strand>
        <context>TATTGGAATG[C/T]CTTCGAAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCGGCGGCATGAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATG</left_flank>
        <right_flank>CTTCGAAAAGTGTCTCGATTTGACGAATTGAGAACGATTTTTAATTGGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATGAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGTCTTCGAAAAGTGTCTCGATTTGACGAATTGAGAACGATTTTTAATTGGTTGGAAGTCTTTTGAAAATAGTTGGCAAGGCGTTTGAATTCAAAAAAAAAGAAGAATCTACGAAGATAGAAATTAGGAGAAGAGACAAAAAATGAATTTCACGTGAATTTTTTTACAGTTTCGAGCAATTTTTAAAAGCGACCTTTTTTGACACTATTATCTTTACAGCTGATTAGACTTAAAATTAGACTAATAAATTATGATTCTCAAAAATTTAATAATTGAAGGAAGATTTTTCAATATTTTATGTTTCAAATTTAAGACTTCTCACAGTTTTTGAGTTATTTCTCAATGATTAAACTTCATTTCTGGGGTTTTCTTCCAGTTTTAGTTTCCTAAAGACCAACAGAAAAAAATTAAGACACGTTCTCTGTAGAACTCCACTTCAAGCCTATTGTTCACTACAAAAATATTCAAACTTGTTTTTCGGAGTTGATGTTATATGTATCTTT</canonical>
            <polymorphic>CTTTCTTGCACTAAAAAAACGGAAAAATCAGAAAACAAACAAATATGCTGAAACTGCAAAAAAATGGAAAAATTCCAGGATAATTTCTCAACAAAAAATGGAAAAATCGACTAAAGTAATAGTAAAAAACGCGATTGACAAACTAGGAAAAAAACATCAATTTCTATGGATAACAGCATTATTTTTTTAGAATTGAAAATCTACAGTAACCCCATTATCACTACACTCACTGCAAGGTTGGAGCATCATAGGCGACTCGGAGCTCTGCACTCTTTGGATTTTTACAAACGTCTCTTATGAATCCGGGGATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATGAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGYCTTCGAAAAGTGTCTCGATTTGACGAATTGAGAACGATTTTTAATTGGTTGGAAGTCTTTTGAAAATAGTTGGCAAGGCGTTTGAATTCAAAAAAAAAGAAGAATCTACGAAGATAGAAATTAGGAGAAGAGACAAAAAATGAATTTCACGTGAATTTTTTTACAGTTTCGAGCAATTTTTAAAAGCGACCTTTTTTGACACTATTATCTTTACAGCTGATTAGACTTAAAATTAGACTAATAAATTATGATTCTCAAAAATTTAATAATTGAAGGAAGATTTTTCAATATTTTATGTTTCAAATTTAAGACTTCTCACAGTTTTTGAGTTATTTCTCAATGATTAAACTTCATTTCTGGGGTTTTCTTCCAGTTTTAGTTTCCTAAAGACCAACAGAAAAAAATTAAGACACGTTCTCTGTAGAACTCCACTTCAAGCCTATTGTTCACTACAAAAATATTCAAACTTGTTTTTCGGAGTTGATGTTATATGTATCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATTGAAATGATTCCTCCT</pcr_primer_p1>
		<pcr_primer_p2>AGACTTCCAACCAATTAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATGAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGTCTTCGAAAAGTGTCTCGATTTGACGAATTGAGAACGATTTTTAATTGGTTGGAAGTCT</canonical_amplicon>
		<polymorphic_amplicon>ATGATTGAAATGATTCCTCCTTCTCCAGAAGACGTTTCATCGGACCCCACACGACATTTTTTGGATTCAGGTTCTGAAGAATCCTGAGGAGTTGGAGCCGAGGGAAGCGTCCAATTTTTGAGACTCAAATTGTCCAAAGAAGCGGCGGCATGAAGATTTTGAGATTCGAAATCGGTCATTTTATTGGAATGYCTTCGAAAAGTGTCTCGATTTGACGAATTGAGAACGATTTTTAATTGGTTGGAAGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24651</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>13094</contig_pos>
        <strand>+</strand>
        <context>CGTCGAGCAC[A/G]ACAGCAGAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCAC</left_flank>
        <right_flank>ACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAAAAAACCTTTACCGCAATATATTTTAATGAAAATAAATAAAAATTTTTCAGCGGAAGAAGAGGGTCCCCCTGGGCCTCCAGGACCACCCGGTCCACCAGGTCCTGACGGCCCGCCTGGTCCAGATGGACCACCGGGCCCTCCTGGTCCAGATGGACCACCGGGCCCACCTGGTCCTCCCGCAGGTAACTTGCTTAGCTGCGACAGAAAACAGGCTCAGATTTATAGAATCGGCCACATCGAATGCTCCAACTACCACAGTAGCACCATCCAGCTCAACTACCGAAGTAAGGTCGTCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTGCCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACCACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTC</canonical>
            <polymorphic>TGAAAAAAAACCTTTACCGCAATATATTTTAATGAAAATAAATAAAAATTTTTCAGCGGAAGAAGAGGGTCCCCCTGGGCCTCCAGGACCACCCGGTCCACCAGGTCCTGACGGCCCGCCTGGTCCAGATGGACCACCGGGCCCTCCTGGTCCAGATGGACCACCGGGCCCACCTGGTCCTCCCGCAGGTAACTTGCTTAGCTGCGACAGAAAACAGGCTCAGATTTATAGAATCGGCCACATCGAATGCTCCAACTACCACAGTAGCACCATCCAGCTCAACTACCGAAGTAAGGTCGTCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTGCCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACCACTGAAGTACCATCGTCGAGCACRACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTACTGAATTGCCGTCATC</pcr_primer_p1>
		<pcr_primer_p2>AGTAGTTGAGCTGGATGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACTACTGAATTGCCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACCACTGAAGTACCATCGTCGAGCACRACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACT</canonical_amplicon>
		<polymorphic_amplicon>ACTACTGAATTGCCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACCACTGAAGTACCATCGTCGAGCACRACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24652</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>13205</contig_pos>
        <strand>+</strand>
        <context>CAGAACCATC[A/C]AGCTCAACTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATC</left_flank>
        <right_flank>AGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGCCCGCCTGGTCCAGATGGACCACCGGGCCCTCCTGGTCCAGATGGACCACCGGGCCCACCTGGTCCTCCCGCAGGTAACTTGCTTAGCTGCGACAGAAAACAGGCTCAGATTTATAGAATCGGCCACATCGAATGCTCCAACTACCACAGTAGCACCATCCAGCTCAACTACCGAAGTAAGGTCGTCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTGCCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACCACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACC</canonical>
            <polymorphic>CGGCCCGCCTGGTCCAGATGGACCACCGGGCCCTCCTGGTCCAGATGGACCACCGGGCCCACCTGGTCCTCCCGCAGGTAACTTGCTTAGCTGCGACAGAAAACAGGCTCAGATTTATAGAATCGGCCACATCGAATGCTCCAACTACCACAGTAGCACCATCCAGCTCAACTACCGAAGTAAGGTCGTCGAGCACAACAGCAGAACCATCMAGCTCAACTACTGAATTGCCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACCACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAACTACTGAATTACCGTCATC</pcr_primer_p1>
		<pcr_primer_p2>GTAGTTGAGCTGGATGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGCTCAACTAC</canonical_amplicon>
		<polymorphic_amplicon>TCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGCTCAACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24653</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>13217</contig_pos>
        <strand>+</strand>
        <context>GCTCAACTAC[C/T]GAAGTACCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</left_flank>
        <right_flank>GAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAGATGGACCACCGGGCCCTCCTGGTCCAGATGGACCACCGGGCCCACCTGGTCCTCCCGCAGGTAACTTGCTTAGCTGCGACAGAAAACAGGCTCAGATTTATAGAATCGGCCACATCGAATGCTCCAACTACCACAGTAGCACCATCCAGCTCAACTACCGAAGTAAGGTCGTCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTGCCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACCACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCAC</canonical>
            <polymorphic>TCCAGATGGACCACCGGGCCCTCCTGGTCCAGATGGACCACCGGGCCCACCTGGTCCTCCCGCAGGTAACTTGCTTAGCTGCGACAGAAAACAGGCTCAGATTTATAGAATCGGCCACATCGAATGCTCCAACTACCACAGTAGCACCATCCAGCTCAACTACCGAAGTAAGGTCGTCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTGCCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACCACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACYGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAACTACTGAATTACCGTCATC</pcr_primer_p1>
		<pcr_primer_p2>GTAGTTGAGCTGGATGGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</canonical_amplicon>
		<polymorphic_amplicon>TCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24654</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>13557</contig_pos>
        <strand>+</strand>
        <context>AACTACTGAA[G/T]TACCRTCRTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAA</left_flank>
        <right_flank>TACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACA</canonical>
            <polymorphic>ATCAAGCTCAACTACTGAAKTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>144 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 21 19</canonical_bands>
                <polymorphic_bands>165 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAACTACTGAAGTACCGTCAT</pcr_primer_p1>
		<pcr_primer_p2>GTAGTTGAACTGGATGGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTAC</canonical_amplicon>
		<polymorphic_amplicon>CTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24655</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>13562</contig_pos>
        <strand>+</strand>
        <context>CTGAAKTACC[A/G]TCRTCRAGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACC</left_flank>
        <right_flank>TCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGA</canonical>
            <polymorphic>GCTCAACTACTGAAGTACCRTCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAACTACTGAAGTACCGTCAT</pcr_primer_p1>
		<pcr_primer_p2>GTAGTTGAACTGGATGGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTAC</canonical_amplicon>
		<polymorphic_amplicon>CTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24656</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>13565</contig_pos>
        <strand>+</strand>
        <context>AAKTACCRTC[A/G]TCRAGCACRA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATC</left_flank>
        <right_flank>TCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACC</canonical>
            <polymorphic>CAACTACTGAAGTACCATCRTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>144 144 144 96 96 65 48 48 48 48 48 48 23</canonical_bands>
                <polymorphic_bands>167 144 144 96 96 65 48 48 48 48 48 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAACTACTGAAGTACCGTCAT</pcr_primer_p1>
		<pcr_primer_p2>GTAGTTGAACTGGATGGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTAC</canonical_amplicon>
		<polymorphic_amplicon>CTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24657</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>13568</contig_pos>
        <strand>+</strand>
        <context>TACCRTCRTC[A/G]AGCACRACAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTC</left_flank>
        <right_flank>AGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATC</canonical>
            <polymorphic>CTACTGAAGTACCATCGTCRAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>96 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 24 16</canonical_bands>
                <polymorphic_bands>96 72 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 16</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>96 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 24 16</canonical_bands>
                <polymorphic_bands>96 72 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 16</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 21 19</canonical_bands>
                <polymorphic_bands>67 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 21</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>144 144 144 96 96 68 48 48 48 48 48 48 20</canonical_bands>
                <polymorphic_bands>164 144 144 96 96 68 48 48 48 48 48 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAACTACTGAAGTACCGTCAT</pcr_primer_p1>
		<pcr_primer_p2>GTAGTTGAACTGGATGGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTAC</canonical_amplicon>
		<polymorphic_amplicon>CTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24658</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>13574</contig_pos>
        <strand>+</strand>
        <context>CRTCRAGCAC[A/G]ACAGCAGAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCAC</left_flank>
        <right_flank>ACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTC</canonical>
            <polymorphic>AAGTACCATCGTCGAGCACRACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAACTACTGAAGTACCGTCAT</pcr_primer_p1>
		<pcr_primer_p2>GTAGTTGAACTGGATGGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTAC</canonical_amplicon>
		<polymorphic_amplicon>CTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24659</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>13589</contig_pos>
        <strand>+</strand>
        <context>CAGAACCATC[A/C]AGYTCAACTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATC</left_flank>
        <right_flank>AGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACC</canonical>
            <polymorphic>GCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCMAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAACTACTGAAGTACCGTCAT</pcr_primer_p1>
		<pcr_primer_p2>GTAGTTGAACTGGATGGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTAC</canonical_amplicon>
		<polymorphic_amplicon>CTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24660</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>13592</contig_pos>
        <strand>+</strand>
        <context>AACCATCMAG[C/T]TCAACTACTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAG</left_flank>
        <right_flank>TCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATC</canonical>
            <polymorphic>CGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGYTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>144 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 21 19</canonical_bands>
                <polymorphic_bands>144 96 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 21 19</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>131 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 35 21 19 13 13</canonical_bands>
                <polymorphic_bands>131 96 48 48 48 48 48 48 48 48 48 48 48 48 48 48 35 21 19 13 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAACTACTGAAGTACCGTCAT</pcr_primer_p1>
		<pcr_primer_p2>GTAGTTGAACTGGATGGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGYTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTAC</canonical_amplicon>
		<polymorphic_amplicon>CTCAACTACTGAAGTACCGTCATCGAGAACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGYTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24661</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>13997</contig_pos>
        <strand>+</strand>
        <context>AAGTACCATC[C/G]TCGAGYACGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATC</left_flank>
        <right_flank>TCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACC</canonical>
            <polymorphic>CAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCSTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>144 96 96 96 96 71 48 48 48 48 48 48 48 48 17</canonical_bands>
                <polymorphic_bands>144 119 96 96 96 96 48 48 48 48 48 48 48 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAACTACTGAAGTACCGTCAT</pcr_primer_p1>
		<pcr_primer_p2>TAGTTGAGCTGGATGGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTA</canonical_amplicon>
		<polymorphic_amplicon>CTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24662</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>14003</contig_pos>
        <strand>+</strand>
        <context>CATCSTCGAG[C/T]ACGACAGCMG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAG</left_flank>
        <right_flank>ACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAG</canonical>
            <polymorphic>CTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGYACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 21 19</canonical_bands>
                <polymorphic_bands>96 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 21 19</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 21 19</canonical_bands>
                <polymorphic_bands>96 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 21 19</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 30 21 19 18</canonical_bands>
                <polymorphic_bands>96 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 30 21 19 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAACTACTGAAGTACCGTCAT</pcr_primer_p1>
		<pcr_primer_p2>TAGTTGAGCTGGATGGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTA</canonical_amplicon>
		<polymorphic_amplicon>CTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24663</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>14012</contig_pos>
        <strand>+</strand>
        <context>GYACGACAGC[A/C]GAACCATCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGC</left_flank>
        <right_flank>GAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCGACTAC</canonical>
            <polymorphic>CGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCMGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCGACTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAACTACTGAAGTACCGTCAT</pcr_primer_p1>
		<pcr_primer_p2>TAGTTGAGCTGGATGGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTA</canonical_amplicon>
		<polymorphic_amplicon>CTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24664</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>16040</contig_pos>
        <strand></strand>
        <context>AACCATCCAG[T/C]TCAACTACTR</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAG</left_flank>
        <right_flank>TCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTC</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACAGCCGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTTAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTC</canonical>
            <polymorphic>CGACAGCCGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTTAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGYTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAACTACTGAAGTACCTTCCTC</pcr_primer_p1>
		<pcr_primer_p2>GTAGTTGAGCTGGATGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTAC</canonical_amplicon>
		<polymorphic_amplicon>TCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24665</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>16050</contig_pos>
        <strand></strand>
        <context>YTCAACTACT[G/A]AAKTACCTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACT</left_flank>
        <right_flank>AAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTTAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACG</canonical>
            <polymorphic>ACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTTAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTRAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAACTACTGAAGTACCGTCATC</pcr_primer_p1>
		<pcr_primer_p2>TAGTTGAGCTTGATGGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTTAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTRAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTA</canonical_amplicon>
		<polymorphic_amplicon>TCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTTAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTRAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24666</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>16053</contig_pos>
        <strand></strand>
        <context>AACTACTRAA[G/T]TACCTTCMTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAA</left_flank>
        <right_flank>TACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTTAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACA</canonical>
            <polymorphic>ATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTTAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAKTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>96 96 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 21 19</canonical_bands>
                <polymorphic_bands>96 96 96 48 48 48 48 48 48 48 48 48 48 48 48 48 48 21 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAACTACTGAAGTACCGTCATC</pcr_primer_p1>
		<pcr_primer_p2>TAGTTGAGCTTGATGGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTTAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAKTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTA</canonical_amplicon>
		<polymorphic_amplicon>TCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTTAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAKTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24667</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>16061</contig_pos>
        <strand></strand>
        <context>AAKTACCTTC[C/A]TCGAGCACRA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTC</left_flank>
        <right_flank>TCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACCAGTGAAGTACCTTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTTAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACC</canonical>
            <polymorphic>CAACCAGTGAAGTACCTTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTTAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCMTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>452 404 96 48</canonical_bands>
                <polymorphic_bands>500 452 48</polymorphic_bands>
            </assay>
            <assay>
                <site>CTCGAG</site>
                <isoschizomers>
                    <enzyme>BssHI</enzyme>
                    <enzyme>PaeR7I</enzyme>
                    <enzyme>SciI</enzyme>
                    <enzyme>Sfr274I</enzyme>
                    <enzyme>SlaI</enzyme>
                    <enzyme>TliI</enzyme>
                    <enzyme>XhoI</enzyme>
                </isoschizomers>
                <canonical_bands>452 404 96 48</canonical_bands>
                <polymorphic_bands>500 452 48</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>452 404 96 48</canonical_bands>
                <polymorphic_bands>500 452 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAACTACTGAAGTACCGTCATC</pcr_primer_p1>
		<pcr_primer_p2>TAGTTGAGCTTGATGGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTTAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCMTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTA</canonical_amplicon>
		<polymorphic_amplicon>TCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTTAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCMTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24668</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>16070</contig_pos>
        <strand></strand>
        <context>CMTCGAGCAC[G/A]ACAGCAGAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCAC</left_flank>
        <right_flank>ACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGAC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTACCTTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTTAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTC</canonical>
            <polymorphic>AAGTACCTTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTTAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACRACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAACTACTGAAGTACCGTCATC</pcr_primer_p1>
		<pcr_primer_p2>TAGTTGAGCTTGATGGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTTAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACRACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTA</canonical_amplicon>
		<polymorphic_amplicon>TCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTTAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACRACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24669</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>16115</contig_pos>
        <strand></strand>
        <context>CATCCTCGAG[C/T]ACGACAGCCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAG</left_flank>
        <right_flank>ACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCAC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTTAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAG</canonical>
            <polymorphic>CCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTTAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGYACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 21 19</canonical_bands>
                <polymorphic_bands>96 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 21 19</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 21 19</canonical_bands>
                <polymorphic_bands>96 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 21 19</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 27 21 21 19</canonical_bands>
                <polymorphic_bands>96 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 27 21 21 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAACTACTGAAGTACCGTCATC</pcr_primer_p1>
		<pcr_primer_p2>TAGTTGAGCTTGATGGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTTAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTA</canonical_amplicon>
		<polymorphic_amplicon>TCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTTAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGYACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24670</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>16218</contig_pos>
        <strand>+</strand>
        <context>GAGCACGACA[A/G]CAGAACCATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACA</left_flank>
        <right_flank>CAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTTAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACT</canonical>
            <polymorphic>ACCATCGTCGAGCACGACARCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTTAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTACCTTCATCGAGCAC</pcr_primer_p1>
		<pcr_primer_p2>GTAGTTGAGCTGGATGGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>191</pcr_amplicon_size>
		<canonical_amplicon>GAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</canonical_amplicon>
		<polymorphic_amplicon>GAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24671</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>16250</contig_pos>
        <strand>+</strand>
        <context>CCGAAGTACC[A/G]TCATCGAGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACC</left_flank>
        <right_flank>TCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTTAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGA</canonical>
            <polymorphic>GCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTTAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCRTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>192 144 144 96 96 96 96 48 48 21 19</canonical_bands>
                <polymorphic_bands>192 144 144 144 96 96 96 48 21 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAACTACTGAATTACCGTCATC</pcr_primer_p1>
		<pcr_primer_p2>GTAGTTGAGCTGGATGGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</canonical_amplicon>
		<polymorphic_amplicon>TCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCRTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24672</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>16277</contig_pos>
        <strand></strand>
        <context>CAGAACCATC[C/A]AGCTCAACTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATC</left_flank>
        <right_flank>AGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAG</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCACGACAGCAGAACCATCCAGCTTAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACC</canonical>
            <polymorphic>GCACGACAGCAGAACCATCCAGCTTAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCMAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAACTACTGAATTACCGTCATC</pcr_primer_p1>
		<pcr_primer_p2>GTAGTTGAGCTGGATGGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</canonical_amplicon>
		<polymorphic_amplicon>TCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24673</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>16289</contig_pos>
        <strand></strand>
        <context>GCTCAACTAC[T/C]GAAGTACCRT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</left_flank>
        <right_flank>GAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCATCCAGCTTAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCAC</canonical>
            <polymorphic>AACCATCCAGCTTAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACYGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAACTACTGAATTACCGTCATC</pcr_primer_p1>
		<pcr_primer_p2>GTAGTTGAGCTGGATGGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</canonical_amplicon>
		<polymorphic_amplicon>TCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACYGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24674</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>16298</contig_pos>
        <strand></strand>
        <context>CYGAAGTACC[A/G]TCRTCGAGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACC</left_flank>
        <right_flank>TCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGA</canonical>
            <polymorphic>GCTTAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCRTCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAACTACTGAATTACCGTCATC</pcr_primer_p1>
		<pcr_primer_p2>GTAGTTGAGCTGGATGGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</canonical_amplicon>
		<polymorphic_amplicon>TCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCRTCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24675</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>16301</contig_pos>
        <strand></strand>
        <context>AAGTACCRTC[G/A]TCGAGCACGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATC</left_flank>
        <right_flank>TCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACTACCGAAGTACCATCGTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACC</canonical>
            <polymorphic>TAACTACCGAAGTACCATCRTCGAGCACGAAAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>432 144 113 96 96 48 48 23</canonical_bands>
                <polymorphic_bands>432 144 113 96 96 71 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAACTACTGAATTACCGTCATC</pcr_primer_p1>
		<pcr_primer_p2>GTAGTTGAGCTGGATGGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</canonical_amplicon>
		<polymorphic_amplicon>TCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24676</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>16337</contig_pos>
        <strand></strand>
        <context>GCTCAACTAC[C/T]GAAKTACCGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</left_flank>
        <right_flank>GAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCAC</canonical>
            <polymorphic>AACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACYGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAACTACTGAATTACCGTCATC</pcr_primer_p1>
		<pcr_primer_p2>GTAGTTGAGCTGGATGGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACYGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</canonical_amplicon>
		<polymorphic_amplicon>TCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACYGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24677</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>16341</contig_pos>
        <strand></strand>
        <context>AACTACYGAA[G/T]TACCGTCATC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAA</left_flank>
        <right_flank>TACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACA</canonical>
            <polymorphic>ATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAKTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>96 96 96 48 48 48 48 48 48 48 48 48 48 48 48 48 48 21 19</canonical_bands>
                <polymorphic_bands>144 96 96 48 48 48 48 48 48 48 48 48 48 48 48 48 21 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAACTACTGAATTACCGTCATC</pcr_primer_p1>
		<pcr_primer_p2>GTAGTTGAGCTGGATGGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAKTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</canonical_amplicon>
		<polymorphic_amplicon>TCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAKTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24678</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>16373</contig_pos>
        <strand></strand>
        <context>CAGAACCATC[A/C]AGCTCAACTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATC</left_flank>
        <right_flank>AGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACC</canonical>
            <polymorphic>GCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCMAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAACTACTGAATTACCGTCATC</pcr_primer_p1>
		<pcr_primer_p2>GTAGTTGAGCTGGATGGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCMAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</canonical_amplicon>
		<polymorphic_amplicon>TCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCMAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24679</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>16394</contig_pos>
        <strand>+</strand>
        <context>CTGAAGTACC[A/T]TCRTCGAGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACC</left_flank>
        <right_flank>TCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGA</canonical>
            <polymorphic>GTTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCWTCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAACTACTGAATTACCGTCATC</pcr_primer_p1>
		<pcr_primer_p2>GTAGTTGAGCTGGATGGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>344</pcr_amplicon_size>
		<canonical_amplicon>TCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCWTCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</canonical_amplicon>
		<polymorphic_amplicon>TCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCWTCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24680</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>16397</contig_pos>
        <strand>+</strand>
        <context>AAGTACCWTC[A/G]TCGAGCACGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATC</left_flank>
        <right_flank>TCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACC</canonical>
            <polymorphic>CAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCRTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>407 144 144 96 96 65 48</canonical_bands>
                <polymorphic_bands>503 144 144 96 65 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAACTACTGAATTACCGTCATC</pcr_primer_p1>
		<pcr_primer_p2>GTAGTTGAGCTGGATGGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>344</pcr_amplicon_size>
		<canonical_amplicon>TCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCRTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</canonical_amplicon>
		<polymorphic_amplicon>TCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCRTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24681</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>16433</contig_pos>
        <strand></strand>
        <context>GCTCAACTAC[T/C]GAAKTACCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</left_flank>
        <right_flank>GAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCAC</canonical>
            <polymorphic>AACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACYGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAACTACTGAATTACCGTCATC</pcr_primer_p1>
		<pcr_primer_p2>GTAGTTGAGCTGGATGGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>344</pcr_amplicon_size>
		<canonical_amplicon>CTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</canonical_amplicon>
		<polymorphic_amplicon>CTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24682</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>16437</contig_pos>
        <strand></strand>
        <context>AACTACYGAA[T/G]TACCGTCATC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAA</left_flank>
        <right_flank>TACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACA</canonical>
            <polymorphic>ATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAAKTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>336 257 240 144 23</canonical_bands>
                <polymorphic_bands>497 336 144 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAACTACTGAATTACCGTCATC</pcr_primer_p1>
		<pcr_primer_p2>GTAGTTGAGCTGGATGGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>344</pcr_amplicon_size>
		<canonical_amplicon>ATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</canonical_amplicon>
		<polymorphic_amplicon>ATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24683</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>16473</contig_pos>
        <strand>+</strand>
        <context>ACCATCCAGC[A/T]CAACTACTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGC</left_flank>
        <right_flank>CAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCG</canonical>
            <polymorphic>GACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCWCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 47 41 27 21</canonical_bands>
                <polymorphic_bands>48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 47 41</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAACTACTGAATTACCGTCATC</pcr_primer_p1>
		<pcr_primer_p2>GTAGTTGAGCTGGATGGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>344</pcr_amplicon_size>
		<canonical_amplicon>TCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</canonical_amplicon>
		<polymorphic_amplicon>TCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCWCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24684</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>16533</contig_pos>
        <strand></strand>
        <context>AACTACTGAA[G/T]TACCGTCATC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAA</left_flank>
        <right_flank>TACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACA</canonical>
            <polymorphic>ATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAKTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>96 96 96 96 48 48 48 48 48 48 48 48 48 48 48 48 21 19</canonical_bands>
                <polymorphic_bands>96 96 96 96 96 48 48 48 48 48 48 48 48 48 48 21 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAACCATCCAGCTCAACTAC</pcr_primer_p1>
		<pcr_primer_p2>CTCGATGACGGTAATTCAGTA</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>AGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAG</canonical_amplicon>
		<polymorphic_amplicon>AGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAKTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24685</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>16577</contig_pos>
        <strand></strand>
        <context>GCTCAACTAC[C/T]GAAGTACCGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</left_flank>
        <right_flank>GAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCAC</canonical>
            <polymorphic>AACCATCCAGTTCAACTACTGAAGTACCATCCTCGAGCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACYGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAACCATCCAGCTCAACTAC</pcr_primer_p1>
		<pcr_primer_p2>CTCGATGACGGTAATTCAGTA</pcr_primer_p2>
		<pcr_amplicon_size>279</pcr_amplicon_size>
		<canonical_amplicon>AGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACYGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAG</canonical_amplicon>
		<polymorphic_amplicon>AGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACYGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24686</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>16613</contig_pos>
        <strand></strand>
        <context>CAGAACCATC[A/C]AGCTCAACTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATC</left_flank>
        <right_flank>AGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAG</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACC</canonical>
            <polymorphic>GCACGACAGCCGAACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCMAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAACCATCCAGCTCAACTAC</pcr_primer_p1>
		<pcr_primer_p2>CTCGATGACGGTAATTCAGTA</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>AGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCMAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAG</canonical_amplicon>
		<polymorphic_amplicon>AGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCMAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24687</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>16625</contig_pos>
        <strand>+</strand>
        <context>GCTCAACTAC[C/T]RAAGTACCRT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTAC</left_flank>
        <right_flank>GAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCAC</canonical>
            <polymorphic>AACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACYGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAACCATCCAGCTCAACTAC</pcr_primer_p1>
		<pcr_primer_p2>CTCGATGACGGTAATTCAGTA</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>AGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACYGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAG</canonical_amplicon>
		<polymorphic_amplicon>AGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACYGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24688</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>16626</contig_pos>
        <strand>+</strand>
        <context>CTCAACTACY[A/G]AAGTACCRTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACT</left_flank>
        <right_flank>AAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACG</canonical>
            <polymorphic>ACCATCTAGTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTRAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAACCATCCAGCTCAACTAC</pcr_primer_p1>
		<pcr_primer_p2>CTCGATGACGGTAATTCAGTA</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>AGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTRAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAG</canonical_amplicon>
		<polymorphic_amplicon>AGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTRAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24689</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>16634</contig_pos>
        <strand></strand>
        <context>CYRAAGTACC[A/G]TCGTCGAGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACC</left_flank>
        <right_flank>TCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATC</right_flank>
        <qual_score>33</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGA</canonical>
            <polymorphic>GTTCAACTACTGAAGTACCTTCATCGAGCACAACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCRTCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAACCATCCAGCTCAACTAC</pcr_primer_p1>
		<pcr_primer_p2>CTCGATGACGGTAATTCAGTA</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>AGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCRTCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAG</canonical_amplicon>
		<polymorphic_amplicon>AGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCRTCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24690</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>16709</contig_pos>
        <strand>+</strand>
        <context>CAGAACCATC[C/T]AGCTCAACTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATC</left_flank>
        <right_flank>AGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACAATCCAGCTCAACTACCGAAGTACCGTCATCGATCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACC</canonical>
            <polymorphic>GCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCYAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACAATCCAGCTCAACTACCGAAGTACCGTCATCGATCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAACCATCCAGCTCAACTAC</pcr_primer_p1>
		<pcr_primer_p2>CTCGATGACGGTAATTCAGTA</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>AGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAG</canonical_amplicon>
		<polymorphic_amplicon>AGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24691</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>16730</contig_pos>
        <strand>+</strand>
        <context>CTGAAGTACC[G/T]TCATCGAGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACC</left_flank>
        <right_flank>TCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACAATCCAGCTCAACTACCGAAGTACCGTCATCGATCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGA</canonical>
            <polymorphic>GCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCKTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACAATCCAGCTCAACTACCGAAGTACCGTCATCGATCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>144 96 96 96 96 96 96 69 48 48 48 48 19</canonical_bands>
                <polymorphic_bands>144 144 96 96 96 96 96 69 48 48 48 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAACCATCCAGCTCAACTAC</pcr_primer_p1>
		<pcr_primer_p2>CTCGATGACGGTAATTCAGTA</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>AGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCKTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAG</canonical_amplicon>
		<polymorphic_amplicon>AGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCKTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24692</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>16742</contig_pos>
        <strand>+</strand>
        <context>CATCGAGCAC[A/G]ACAGCAGAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCAC</left_flank>
        <right_flank>ACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACAATCCAGCTCAACTACCGAAGTACCGTCATCGATCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTC</canonical>
            <polymorphic>AAGTACCGTCATCGAGCACRACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACAATCCAGCTCAACTACCGAAGTACCGTCATCGATCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAACCATCAAGCTCAACTA</pcr_primer_p1>
		<pcr_primer_p2>TCGATGACGGTAATTCAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>279</pcr_amplicon_size>
		<canonical_amplicon>CAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGA</canonical_amplicon>
		<polymorphic_amplicon>CAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCACAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24693</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>17105</contig_pos>
        <strand>+</strand>
        <context>GCTCAACTAC[C/T]GAAKTACCGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTAC</left_flank>
        <right_flank>GAAGTACCGTCATCGAGCACGACAGCAGAACAATCCAGCTCAACTACCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACAATCCAGCTCAACTACCGAAGTACCGTCATCGATCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCCGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCAC</canonical>
            <polymorphic>AACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACYGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACAATCCAGCTCAACTACCGAAGTACCGTCATCGATCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCCGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTACCGAAGTACCGTCATC</pcr_primer_p1>
		<pcr_primer_p2>TAGTTGAGCTTGATGGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACAATCCAGCTCAACTACCGAAGTACCGTCATCGATCACGACAGCAGAACCATCAAGCTCAACTA</canonical_amplicon>
		<polymorphic_amplicon>AACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACAATCCAGCTCAACTACCGAAGTACCGTCATCGATCACGACAGCAGAACCATCAAGCTCAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24694</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>17109</contig_pos>
        <strand>+</strand>
        <context>AACTACYGAA[G/T]TACCGTCATC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAA</left_flank>
        <right_flank>TACCGTCATCGAGCACGACAGCAGAACAATCCAGCTCAACTACCGAAGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACAATCCAGCTCAACTACCGAAGTACCGTCATCGATCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCCGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACA</canonical>
            <polymorphic>ATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAKTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACAATCCAGCTCAACTACCGAAGTACCGTCATCGATCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCCGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>96 96 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 21 19</canonical_bands>
                <polymorphic_bands>144 96 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 21 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTACCGAAGTACCGTCATC</pcr_primer_p1>
		<pcr_primer_p2>TAGTTGAGCTTGATGGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACAATCCAGCTCAACTACCGAAGTACCGTCATCGATCACGACAGCAGAACCATCAAGCTCAACTA</canonical_amplicon>
		<polymorphic_amplicon>AACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACAATCCAGCTCAACTACCGAAGTACCGTCATCGATCACGACAGCAGAACCATCAAGCTCAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24695</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>17137</contig_pos>
        <strand>+</strand>
        <context>ACAGCAGAAC[A/C]ATCCAGCWCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAAC</left_flank>
        <right_flank>ATCCAGCTCAACTACCGAAGTACCGTCATCGATCACGACAGCAGAACCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACAATCCAGCTCAACTACCGAAGTACCGTCATCGATCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCCGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAG</canonical>
            <polymorphic>TCGAGCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACMATCCAGCTCAACTACCGAAGTACCGTCATCGATCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCCGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTACCGAAGTACCGTCATC</pcr_primer_p1>
		<pcr_primer_p2>TAGTTGAGCTTGATGGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACAATCCAGCTCAACTACCGAAGTACCGTCATCGATCACGACAGCAGAACCATCAAGCTCAACTA</canonical_amplicon>
		<polymorphic_amplicon>AACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACMATCCAGCTCAACTACCGAAGTACCGTCATCGATCACGACAGCAGAACCATCAAGCTCAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24696</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>17145</contig_pos>
        <strand>+</strand>
        <context>ACMATCCAGC[A/T]CAACTACYGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACAATCCAGC</left_flank>
        <right_flank>CAACTACCGAAGTACCGTCATCGATCACGACAGCAGAACCATCAAGCTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACAATCCAGCTCAACTACCGAAGTACCGTCATCGATCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCCGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCG</canonical>
            <polymorphic>GACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACAATCCAGCWCAACTACCGAAGTACCGTCATCGATCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCCGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>96 96 96 48 48 48 48 48 48 48 48 48 48 48 48 48 48 22 18</canonical_bands>
                <polymorphic_bands>96 96 96 96 48 48 48 48 48 48 48 48 48 48 48 48 22 18</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>96 61 48 48 48 48 48 48 48 48 48 48 48 48 48 48 48 35 35 22 18 13</canonical_bands>
                <polymorphic_bands>96 96 61 48 48 48 48 48 48 48 48 48 48 48 48 48 35 35 22 18 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTACCGAAGTACCGTCATC</pcr_primer_p1>
		<pcr_primer_p2>TAGTTGAGCTTGATGGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACAATCCAGCTCAACTACCGAAGTACCGTCATCGATCACGACAGCAGAACCATCAAGCTCAACTA</canonical_amplicon>
		<polymorphic_amplicon>AACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACAATCCAGCWCAACTACCGAAGTACCGTCATCGATCACGACAGCAGAACCATCAAGCTCAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24697</snp_id>
        <super_contig>c000900835.Contig1</super_contig>
        <contig_pos>17153</contig_pos>
        <strand>+</strand>
        <context>GCWCAACTAC[C/T]GAAGTACCGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCGAAGTACCGTCATCGAGCACGACAGCAGAACAATCCAGCTCAACTAC</left_flank>
        <right_flank>GAAGTACCGTCATCGATCACGACAGCAGAACCATCAAGCTCAACTACTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACAATCCAGCTCAACTACCGAAGTACCGTCATCGATCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCCGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCAC</canonical>
            <polymorphic>AACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACYGAAGTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAATTACCGTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACAATCCAGCTCAACTACCGAAGTACCGTCATCGATCACGACAGCAGAACCATCAAGCTCAACTACTGAAGTACCATCGTCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGTTCAACTACTGAAGTACCTTCCTCGAGCACGACAGCAGAACCATCCAGCTCAACTAGTGAAGTACCATCATCGAGCACGACAGCCGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCCGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCCGAACCATCCAGTTCAACCAGTGAAGTACCTTCATCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCATCGTCGAGCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTACCGAAGTACCGTCATC</pcr_primer_p1>
		<pcr_primer_p2>TAGTTGAGCTTGATGGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACAATCCAGCTCAACTACCGAAGTACCGTCATCGATCACGACAGCAGAACCATCAAGCTCAACTA</canonical_amplicon>
		<polymorphic_amplicon>AACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACCATCAAGCTCAACTACCGAAGTACCATCGTCGAGCACGACAGCAGAACCATCCAGCTCAACTACCGAAGTACCGTCATCGAGCACGACAGCAGAACAATCCAGCTCAACTACCGAAGTACCGTCATCGATCACGACAGCAGAACCATCAAGCTCAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24698</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>19043</contig_pos>
        <strand>+</strand>
        <context>TCTTCAAAAA[C/T]CGACTGGGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAA</left_flank>
        <right_flank>CGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCACCATCTCGCTGTCCCTATGTCACATCCGTCTCTCATGGACACAGTTCACCGACTTGTTGGCTCGAATGACCGTCAAACATCTCTACATTGATTTTTGCACATTCGATCCGTCTCTTATTTCTGACAAGGTAAGATAAGAAGATTTTTTTTCCAACAGCCGGGGGCAGAATTTTGAATAAGGTACTTCAGGGGTCGGTAGGGTACGGTGGTCACGGCCGGCCCCGACTTGCACAGCCTTAATGTTTTGCTAATTTCAAATTTTGCAGGTTCTGATGTCGTTACCGTATCTAGATACACTACAAATCCAATCGAGGTATCCATGCTTCTTGAATGAGCTCACGGATCAGACACTAATAAACTGGGCTACAAATTCGAATGTTCCGCGGACGATTCAACTGAGAAATGGATGTGCAAGCCGGATTACTGTAGAAGGCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATTTTTCAAAAACATAATTGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTA</canonical>
            <polymorphic>ACCACCATCTCGCTGTCCCTATGTCACATCCGTCTCTCATGGACACAGTTCACCGACTTGTTGGCTCGAATGACCGTCAAACATCTCTACATTGATTTTTGCACATTCGATCCGTCTCTTATTTCTGACAAGGTAAGATAAGAAGATTTTTTTTCCAACAGCCGGGGGCAGAATTTTGAATAAGGTACTTCAGGGGTCGGTAGGGTACGGTGGTCACGGCCGGCCCCGACTTGCACAGCCTTAATGTTTTGCTAATTTCAAATTTTGCAGGTTCTGATGTCGTTACCGTATCTAGATACACTACAAATCCAATCGAGGTATCCATGCTTCTTGAATGAGCTCACGGATCAGACACTAATAAACTGGGCTACAAATTCGAATGTTCCGCGGACGATTCAACTGAGAAATGGATGTGCAAGCCGGATTACTGTAGAAGGCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAAYCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATTTTTCAAAAACATAATTGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>312 206 124 104 78 67 63 41 5</canonical_bands>
                <polymorphic_bands>312 206 202 104 67 63 41 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAAGATGATGACCATGAGAT</pcr_primer_p1>
		<pcr_primer_p2>TGTAATTGGTTCTATTGGAAATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACA</canonical_amplicon>
		<polymorphic_amplicon>ATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAAYCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24699</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>19189</contig_pos>
        <strand>+</strand>
        <context>TCTTGCACTA[C/G]AGTTTTCGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTA</left_flank>
        <right_flank>AGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTTTCCAACAGCCGGGGGCAGAATTTTGAATAAGGTACTTCAGGGGTCGGTAGGGTACGGTGGTCACGGCCGGCCCCGACTTGCACAGCCTTAATGTTTTGCTAATTTCAAATTTTGCAGGTTCTGATGTCGTTACCGTATCTAGATACACTACAAATCCAATCGAGGTATCCATGCTTCTTGAATGAGCTCACGGATCAGACACTAATAAACTGGGCTACAAATTCGAATGTTCCGCGGACGATTCAACTGAGAAATGGATGTGCAAGCCGGATTACTGTAGAAGGCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATTTTTCAAAAACATAATTGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTAGAATTCAACCAGATCTTCCCCCACTTTCCAAGATTTTGGTCTCGATAGTGTCTGAAACACTAAGTATCATATTCGACTCCACAGCAAGCAGACCGGTCCGGGCCAAGCCAGGGTCGACCCGGCCCGACCCGAGGTTTAGGAAGTGT</canonical>
            <polymorphic>TTTTTTTTCCAACAGCCGGGGGCAGAATTTTGAATAAGGTACTTCAGGGGTCGGTAGGGTACGGTGGTCACGGCCGGCCCCGACTTGCACAGCCTTAATGTTTTGCTAATTTCAAATTTTGCAGGTTCTGATGTCGTTACCGTATCTAGATACACTACAAATCCAATCGAGGTATCCATGCTTCTTGAATGAGCTCACGGATCAGACACTAATAAACTGGGCTACAAATTCGAATGTTCCGCGGACGATTCAACTGAGAAATGGATGTGCAAGCCGGATTACTGTAGAAGGCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTASAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATTTTTCAAAAACATAATTGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTAGAATTCAACCAGATCTTCCCCCACTTTCCAAGATTTTGGTCTCGATAGTGTCTGAAACACTAAGTATCATATTCGACTCCACAGCAAGCAGACCGGTCCGGGCCAAGCCAGGGTCGACCCGGCCCGACCCGAGGTTTAGGAAGTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 282 215</canonical_bands>
                <polymorphic_bands>718 282</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>428 159 142 78 71 63 59</canonical_bands>
                <polymorphic_bands>428 230 142 78 63 59</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCGGCCTTCTTTTAGAT</pcr_primer_p1>
		<pcr_primer_p2>ATTCAATCGGAAAGTTTAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAAT</canonical_amplicon>
		<polymorphic_amplicon>ATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTASAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24700</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>19243</contig_pos>
        <strand>+</strand>
        <context>TGCCTAGGTT[A/T]TTTACATTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTT</left_flank>
        <right_flank>TTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGGTACGGTGGTCACGGCCGGCCCCGACTTGCACAGCCTTAATGTTTTGCTAATTTCAAATTTTGCAGGTTCTGATGTCGTTACCGTATCTAGATACACTACAAATCCAATCGAGGTATCCATGCTTCTTGAATGAGCTCACGGATCAGACACTAATAAACTGGGCTACAAATTCGAATGTTCCGCGGACGATTCAACTGAGAAATGGATGTGCAAGCCGGATTACTGTAGAAGGCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATTTTTCAAAAACATAATTGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTAGAATTCAACCAGATCTTCCCCCACTTTCCAAGATTTTGGTCTCGATAGTGTCTGAAACACTAAGTATCATATTCGACTCCACAGCAAGCAGACCGGTCCGGGCCAAGCCAGGGTCGACCCGGCCCGACCCGAGGTTTAGGAAGTGTCAATGATATTTGTGGCAGTGTGACCGATTGGGCCTATTCCGGTAGAGTTATGAA</canonical>
            <polymorphic>TAGGGTACGGTGGTCACGGCCGGCCCCGACTTGCACAGCCTTAATGTTTTGCTAATTTCAAATTTTGCAGGTTCTGATGTCGTTACCGTATCTAGATACACTACAAATCCAATCGAGGTATCCATGCTTCTTGAATGAGCTCACGGATCAGACACTAATAAACTGGGCTACAAATTCGAATGTTCCGCGGACGATTCAACTGAGAAATGGATGTGCAAGCCGGATTACTGTAGAAGGCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTWTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATTTTTCAAAAACATAATTGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTAGAATTCAACCAGATCTTCCCCCACTTTCCAAGATTTTGGTCTCGATAGTGTCTGAAACACTAAGTATCATATTCGACTCCACAGCAAGCAGACCGGTCCGGGCCAAGCCAGGGTCGACCCGGCCCGACCCGAGGTTTAGGAAGTGTCAATGATATTTGTGGCAGTGTGACCGATTGGGCCTATTCCGGTAGAGTTATGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCGGCCTTCTTTTAGAT</pcr_primer_p1>
		<pcr_primer_p2>ATTCAATCGGAAAGTTTAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAAT</canonical_amplicon>
		<polymorphic_amplicon>ATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTWTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24701</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>19260</contig_pos>
        <strand>+</strand>
        <context>TTCCAATTTA[C/T]TGTTTCWCYA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTA</left_flank>
        <right_flank>TGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCCGGCCCCGACTTGCACAGCCTTAATGTTTTGCTAATTTCAAATTTTGCAGGTTCTGATGTCGTTACCGTATCTAGATACACTACAAATCCAATCGAGGTATCCATGCTTCTTGAATGAGCTCACGGATCAGACACTAATAAACTGGGCTACAAATTCGAATGTTCCGCGGACGATTCAACTGAGAAATGGATGTGCAAGCCGGATTACTGTAGAAGGCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATTTTTCAAAAACATAATTGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTAGAATTCAACCAGATCTTCCCCCACTTTCCAAGATTTTGGTCTCGATAGTGTCTGAAACACTAAGTATCATATTCGACTCCACAGCAAGCAGACCGGTCCGGGCCAAGCCAGGGTCGACCCGGCCCGACCCGAGGTTTAGGAAGTGTCAATGATATTTGTGGCAGTGTGACCGATTGGGCCTATTCCGGTAGAGTTATGAAATCGATGGGTGGGCATC</canonical>
            <polymorphic>GGCCGGCCCCGACTTGCACAGCCTTAATGTTTTGCTAATTTCAAATTTTGCAGGTTCTGATGTCGTTACCGTATCTAGATACACTACAAATCCAATCGAGGTATCCATGCTTCTTGAATGAGCTCACGGATCAGACACTAATAAACTGGGCTACAAATTCGAATGTTCCGCGGACGATTCAACTGAGAAATGGATGTGCAAGCCGGATTACTGTAGAAGGCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTAYTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATTTTTCAAAAACATAATTGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTAGAATTCAACCAGATCTTCCCCCACTTTCCAAGATTTTGGTCTCGATAGTGTCTGAAACACTAAGTATCATATTCGACTCCACAGCAAGCAGACCGGTCCGGGCCAAGCCAGGGTCGACCCGGCCCGACCCGAGGTTTAGGAAGTGTCAATGATATTTGTGGCAGTGTGACCGATTGGGCCTATTCCGGTAGAGTTATGAAATCGATGGGTGGGCATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>499 159 142 71 70 59</canonical_bands>
                <polymorphic_bands>570 159 142 70 59</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTTCCAATAGAACCAATTACA</pcr_primer_p1>
		<pcr_primer_p2>AATCGATTTGATTGAATTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>CATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATTTTTCAAAAACATAATTGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATT</canonical_amplicon>
		<polymorphic_amplicon>CATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTAYTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATTTTTCAAAAACATAATTGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24702</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>19267</contig_pos>
        <strand>+</strand>
        <context>TTAYTGTTTC[A/T]CYAAAATTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTC</left_flank>
        <right_flank>CCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCGACTTGCACAGCCTTAATGTTTTGCTAATTTCAAATTTTGCAGGTTCTGATGTCGTTACCGTATCTAGATACACTACAAATCCAATCGAGGTATCCATGCTTCTTGAATGAGCTCACGGATCAGACACTAATAAACTGGGCTACAAATTCGAATGTTCCGCGGACGATTCAACTGAGAAATGGATGTGCAAGCCGGATTACTGTAGAAGGCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATTTTTCAAAAACATAATTGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTAGAATTCAACCAGATCTTCCCCCACTTTCCAAGATTTTGGTCTCGATAGTGTCTGAAACACTAAGTATCATATTCGACTCCACAGCAAGCAGACCGGTCCGGGCCAAGCCAGGGTCGACCCGGCCCGACCCGAGGTTTAGGAAGTGTCAATGATATTTGTGGCAGTGTGACCGATTGGGCCTATTCCGGTAGAGTTATGAAATCGATGGGTGGGCATCCACGCGT</canonical>
            <polymorphic>CCCGACTTGCACAGCCTTAATGTTTTGCTAATTTCAAATTTTGCAGGTTCTGATGTCGTTACCGTATCTAGATACACTACAAATCCAATCGAGGTATCCATGCTTCTTGAATGAGCTCACGGATCAGACACTAATAAACTGGGCTACAAATTCGAATGTTCCGCGGACGATTCAACTGAGAAATGGATGTGCAAGCCGGATTACTGTAGAAGGCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCWCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATTTTTCAAAAACATAATTGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTAGAATTCAACCAGATCTTCCCCCACTTTCCAAGATTTTGGTCTCGATAGTGTCTGAAACACTAAGTATCATATTCGACTCCACAGCAAGCAGACCGGTCCGGGCCAAGCCAGGGTCGACCCGGCCCGACCCGAGGTTTAGGAAGTGTCAATGATATTTGTGGCAGTGTGACCGATTGGGCCTATTCCGGTAGAGTTATGAAATCGATGGGTGGGCATCCACGCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTCCAATAGAACCAATTACA</pcr_primer_p1>
		<pcr_primer_p2>AATCGATTTGATTGAATTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>CATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATTTTTCAAAAACATAATTGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATT</canonical_amplicon>
		<polymorphic_amplicon>CATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCWCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATTTTTCAAAAACATAATTGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24703</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>19269</contig_pos>
        <strand>+</strand>
        <context>AYTGTTTCWC[C/T]AAAATTCCCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTC</left_flank>
        <right_flank>AAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACTTGCACAGCCTTAATGTTTTGCTAATTTCAAATTTTGCAGGTTCTGATGTCGTTACCGTATCTAGATACACTACAAATCCAATCGAGGTATCCATGCTTCTTGAATGAGCTCACGGATCAGACACTAATAAACTGGGCTACAAATTCGAATGTTCCGCGGACGATTCAACTGAGAAATGGATGTGCAAGCCGGATTACTGTAGAAGGCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATTTTTCAAAAACATAATTGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTAGAATTCAACCAGATCTTCCCCCACTTTCCAAGATTTTGGTCTCGATAGTGTCTGAAACACTAAGTATCATATTCGACTCCACAGCAAGCAGACCGGTCCGGGCCAAGCCAGGGTCGACCCGGCCCGACCCGAGGTTTAGGAAGTGTCAATGATATTTGTGGCAGTGTGACCGATTGGGCCTATTCCGGTAGAGTTATGAAATCGATGGGTGGGCATCCACGCGTCA</canonical>
            <polymorphic>CGACTTGCACAGCCTTAATGTTTTGCTAATTTCAAATTTTGCAGGTTCTGATGTCGTTACCGTATCTAGATACACTACAAATCCAATCGAGGTATCCATGCTTCTTGAATGAGCTCACGGATCAGACACTAATAAACTGGGCTACAAATTCGAATGTTCCGCGGACGATTCAACTGAGAAATGGATGTGCAAGCCGGATTACTGTAGAAGGCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCYAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATTTTTCAAAAACATAATTGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTAGAATTCAACCAGATCTTCCCCCACTTTCCAAGATTTTGGTCTCGATAGTGTCTGAAACACTAAGTATCATATTCGACTCCACAGCAAGCAGACCGGTCCGGGCCAAGCCAGGGTCGACCCGGCCCGACCCGAGGTTTAGGAAGTGTCAATGATATTTGTGGCAGTGTGACCGATTGGGCCTATTCCGGTAGAGTTATGAAATCGATGGGTGGGCATCCACGCGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTCCAATAGAACCAATTACA</pcr_primer_p1>
		<pcr_primer_p2>AATCGATTTGATTGAATTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>CATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATTTTTCAAAAACATAATTGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATT</canonical_amplicon>
		<polymorphic_amplicon>CATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCYAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATTTTTCAAAAACATAATTGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24704</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>19444</contig_pos>
        <strand>+</strand>
        <context>CAAATCGATT[C/T]CCATAAACAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATT</left_flank>
        <right_flank>CCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAAATGGATGTGCAAGCCGGATTACTGTAGAAGGCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATTTTTCAAAAACATAATTGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTAGAATTCAACCAGATCTTCCCCCACTTTCCAAGATTTTGGTCTCGATAGTGTCTGAAACACTAAGTATCATATTCGACTCCACAGCAAGCAGACCGGTCCGGGCCAAGCCAGGGTCGACCCGGCCCGACCCGAGGTTTAGGAAGTGTCAATGATATTTGTGGCAGTGTGACCGATTGGGCCTATTCCGGTAGAGTTATGAAATCGATGGGTGGGCATCCACGCGTCAATCTGGAATTACAATGGAATTGATGACAGGCTGGTGGTGTAATCATGGGAAAAGAGGGCTATGACTGATTAGGGTGGGGTTGGAATGGGGGTTCGAGGGATGATGTAAAATGGTGGTGTTGTTTTTTAGGGTTAAAGTAGACTAAGTGGCATGGCTGTCAAAAACAGGGCGGTGG</canonical>
            <polymorphic>GAGAAATGGATGTGCAAGCCGGATTACTGTAGAAGGCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATTTTTCAAAAACATAATTGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTYCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTAGAATTCAACCAGATCTTCCCCCACTTTCCAAGATTTTGGTCTCGATAGTGTCTGAAACACTAAGTATCATATTCGACTCCACAGCAAGCAGACCGGTCCGGGCCAAGCCAGGGTCGACCCGGCCCGACCCGAGGTTTAGGAAGTGTCAATGATATTTGTGGCAGTGTGACCGATTGGGCCTATTCCGGTAGAGTTATGAAATCGATGGGTGGGCATCCACGCGTCAATCTGGAATTACAATGGAATTGATGACAGGCTGGTGGTGTAATCATGGGAAAAGAGGGCTATGACTGATTAGGGTGGGGTTGGAATGGGGGTTCGAGGGATGATGTAAAATGGTGGTGTTGTTTTTTAGGGTTAAAGTAGACTAAGTGGCATGGCTGTCAAAAACAGGGCGGTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTACCTAAAACATTAATGAAA</pcr_primer_p1>
		<pcr_primer_p2>CTGTGGAGTCGAATATGATACTTA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTAGAATTCAACCAGATCTTCCCCCACTTTCCAAGATTTTGGTCTCGATAGTGTCTGAAACACTAAGTATCATATTCGACTCCACAG</canonical_amplicon>
		<polymorphic_amplicon>TTGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTYCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTAGAATTCAACCAGATCTTCCCCCACTTTCCAAGATTTTGGTCTCGATAGTGTCTGAAACACTAAGTATCATATTCGACTCCACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24705</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>21902</contig_pos>
        <strand>+</strand>
        <context>TTTATGATCA[G/T]AAACAAGCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCA</left_flank>
        <right_flank>AAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAAAAAGAAAACCTACCACATTGCTAGCAGTTCTCTTCAGATACCATTTGAATCTATCTTCTCCTTCGATTTCATATCCTTCGACTGCATTCGCCTTTTCAGTAGTTTGATTAACGATTTCAGACGATAAATCGACTAAGACAGTGTTTCCTGATGGGAGGGGCAAATGAGAATATTGGACTCTTGAAGAGATTGAACCATCGTTTAGGAACACATCAAAAAATAGGAAAGAACCGATAATTATTAAGCCTAATTGGAAATAATTGTTCATCTGAAAATGTTTTACTAAGCTGTGATAATTTTCAGAAGCATGAAAAATAAATTGGGGGGTCTTGCTATTTTTATAAACCAATTTCTTTTGATAGCAAGTCTCAAACAGTTTCAAAATTTCTAAAAGGCAGGCTTTCCAAAGGAAAAAGTAAGGTTTGCCCGAGAGATAGGTTTTTTCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCATAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACGATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAACAGTTCGCAGCTCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAAT</canonical>
            <polymorphic>TTTGAAAAAGAAAACCTACCACATTGCTAGCAGTTCTCTTCAGATACCATTTGAATCTATCTTCTCCTTCGATTTCATATCCTTCGACTGCATTCGCCTTTTCAGTAGTTTGATTAACGATTTCAGACGATAAATCGACTAAGACAGTGTTTCCTGATGGGAGGGGCAAATGAGAATATTGGACTCTTGAAGAGATTGAACCATCGTTTAGGAACACATCAAAAAATAGGAAAGAACCGATAATTATTAAGCCTAATTGGAAATAATTGTTCATCTGAAAATGTTTTACTAAGCTGTGATAATTTTCAGAAGCATGAAAAATAAATTGGGGGGTCTTGCTATTTTTATAAACCAATTTCTTTTGATAGCAAGTCTCAAACAGTTTCAAAATTTCTAAAAGGCAGGCTTTCCAAAGGAAAAAGTAAGGTTTGCCCGAGAGATAGGTTTTTTCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCAKAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACGATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAACAGTTCGCAGCTCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGATAGCAAGTCTCAAACAGT</pcr_primer_p1>
		<pcr_primer_p2>TTGGAGTTAAATTATGTTCTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGATAGCAAGTCTCAAACAGTTTCAAAATTTCTAAAAGGCAGGCTTTCCAAAGGAAAAAGTAAGGTTTGCCCGAGAGATAGGTTTTTTCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCATAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACGATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAA</canonical_amplicon>
		<polymorphic_amplicon>TTTGATAGCAAGTCTCAAACAGTTTCAAAATTTCTAAAAGGCAGGCTTTCCAAAGGAAAAAGTAAGGTTTGCCCGAGAGATAGGTTTTTTCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCAKAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACGATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24706</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>21948</contig_pos>
        <strand>+</strand>
        <context>ACGGGTTTCA[C/T]GACRATGAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCATAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCA</left_flank>
        <right_flank>GACGATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCATTTGAATCTATCTTCTCCTTCGATTTCATATCCTTCGACTGCATTCGCCTTTTCAGTAGTTTGATTAACGATTTCAGACGATAAATCGACTAAGACAGTGTTTCCTGATGGGAGGGGCAAATGAGAATATTGGACTCTTGAAGAGATTGAACCATCGTTTAGGAACACATCAAAAAATAGGAAAGAACCGATAATTATTAAGCCTAATTGGAAATAATTGTTCATCTGAAAATGTTTTACTAAGCTGTGATAATTTTCAGAAGCATGAAAAATAAATTGGGGGGTCTTGCTATTTTTATAAACCAATTTCTTTTGATAGCAAGTCTCAAACAGTTTCAAAATTTCTAAAAGGCAGGCTTTCCAAAGGAAAAAGTAAGGTTTGCCCGAGAGATAGGTTTTTTCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCATAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACGATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAACAGTTCGCAGCTCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATG</canonical>
            <polymorphic>CCATTTGAATCTATCTTCTCCTTCGATTTCATATCCTTCGACTGCATTCGCCTTTTCAGTAGTTTGATTAACGATTTCAGACGATAAATCGACTAAGACAGTGTTTCCTGATGGGAGGGGCAAATGAGAATATTGGACTCTTGAAGAGATTGAACCATCGTTTAGGAACACATCAAAAAATAGGAAAGAACCGATAATTATTAAGCCTAATTGGAAATAATTGTTCATCTGAAAATGTTTTACTAAGCTGTGATAATTTTCAGAAGCATGAAAAATAAATTGGGGGGTCTTGCTATTTTTATAAACCAATTTCTTTTGATAGCAAGTCTCAAACAGTTTCAAAATTTCTAAAAGGCAGGCTTTCCAAAGGAAAAAGTAAGGTTTGCCCGAGAGATAGGTTTTTTCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCATAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCAYGACGATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAACAGTTCGCAGCTCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>503 476 21</canonical_bands>
                <polymorphic_bands>524 476</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>408 267 210 94 21</canonical_bands>
                <polymorphic_bands>408 267 210 115</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>481 242 177 79 21</canonical_bands>
                <polymorphic_bands>481 242 177 100</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGATAGCAAGTCTCAAACAGT</pcr_primer_p1>
		<pcr_primer_p2>TTGGAGTTAAATTATGTTCTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGATAGCAAGTCTCAAACAGTTTCAAAATTTCTAAAAGGCAGGCTTTCCAAAGGAAAAAGTAAGGTTTGCCCGAGAGATAGGTTTTTTCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCATAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACGATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAA</canonical_amplicon>
		<polymorphic_amplicon>TTTGATAGCAAGTCTCAAACAGTTTCAAAATTTCTAAAAGGCAGGCTTTCCAAAGGAAAAAGTAAGGTTTGCCCGAGAGATAGGTTTTTTCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCATAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCAYGACGATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24707</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>21952</contig_pos>
        <strand>+</strand>
        <context>GTTTCAYGAC[A/G]ATGAATTATG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCATGAC</left_flank>
        <right_flank>ATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAATCTATCTTCTCCTTCGATTTCATATCCTTCGACTGCATTCGCCTTTTCAGTAGTTTGATTAACGATTTCAGACGATAAATCGACTAAGACAGTGTTTCCTGATGGGAGGGGCAAATGAGAATATTGGACTCTTGAAGAGATTGAACCATCGTTTAGGAACACATCAAAAAATAGGAAAGAACCGATAATTATTAAGCCTAATTGGAAATAATTGTTCATCTGAAAATGTTTTACTAAGCTGTGATAATTTTCAGAAGCATGAAAAATAAATTGGGGGGTCTTGCTATTTTTATAAACCAATTTCTTTTGATAGCAAGTCTCAAACAGTTTCAAAATTTCTAAAAGGCAGGCTTTCCAAAGGAAAAAGTAAGGTTTGCCCGAGAGATAGGTTTTTTCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCATAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACGATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAACAGTTCGCAGCTCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATGAAAC</canonical>
            <polymorphic>TTGAATCTATCTTCTCCTTCGATTTCATATCCTTCGACTGCATTCGCCTTTTCAGTAGTTTGATTAACGATTTCAGACGATAAATCGACTAAGACAGTGTTTCCTGATGGGAGGGGCAAATGAGAATATTGGACTCTTGAAGAGATTGAACCATCGTTTAGGAACACATCAAAAAATAGGAAAGAACCGATAATTATTAAGCCTAATTGGAAATAATTGTTCATCTGAAAATGTTTTACTAAGCTGTGATAATTTTCAGAAGCATGAAAAATAAATTGGGGGGTCTTGCTATTTTTATAAACCAATTTCTTTTGATAGCAAGTCTCAAACAGTTTCAAAATTTCTAAAAGGCAGGCTTTCCAAAGGAAAAAGTAAGGTTTGCCCGAGAGATAGGTTTTTTCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCATAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACRATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAACAGTTCGCAGCTCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATGAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGATAGCAAGTCTCAAACAGT</pcr_primer_p1>
		<pcr_primer_p2>TTGGAGTTAAATTATGTTCTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGATAGCAAGTCTCAAACAGTTTCAAAATTTCTAAAAGGCAGGCTTTCCAAAGGAAAAAGTAAGGTTTGCCCGAGAGATAGGTTTTTTCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCATAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACGATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAA</canonical_amplicon>
		<polymorphic_amplicon>TTTGATAGCAAGTCTCAAACAGTTTCAAAATTTCTAAAAGGCAGGCTTTCCAAAGGAAAAAGTAAGGTTTGCCCGAGAGATAGGTTTTTTCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCATAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACRATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24708</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>21964</contig_pos>
        <strand>+</strand>
        <context>TGAATTATGA[A/G]AACAATACCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACGATGAATTATGA</left_flank>
        <right_flank>AACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAACA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCCTTCGATTTCATATCCTTCGACTGCATTCGCCTTTTCAGTAGTTTGATTAACGATTTCAGACGATAAATCGACTAAGACAGTGTTTCCTGATGGGAGGGGCAAATGAGAATATTGGACTCTTGAAGAGATTGAACCATCGTTTAGGAACACATCAAAAAATAGGAAAGAACCGATAATTATTAAGCCTAATTGGAAATAATTGTTCATCTGAAAATGTTTTACTAAGCTGTGATAATTTTCAGAAGCATGAAAAATAAATTGGGGGGTCTTGCTATTTTTATAAACCAATTTCTTTTGATAGCAAGTCTCAAACAGTTTCAAAATTTCTAAAAGGCAGGCTTTCCAAAGGAAAAAGTAAGGTTTGCCCGAGAGATAGGTTTTTTCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCATAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACGATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAACAGTTCGCAGCTCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAAT</canonical>
            <polymorphic>TCTCCTTCGATTTCATATCCTTCGACTGCATTCGCCTTTTCAGTAGTTTGATTAACGATTTCAGACGATAAATCGACTAAGACAGTGTTTCCTGATGGGAGGGGCAAATGAGAATATTGGACTCTTGAAGAGATTGAACCATCGTTTAGGAACACATCAAAAAATAGGAAAGAACCGATAATTATTAAGCCTAATTGGAAATAATTGTTCATCTGAAAATGTTTTACTAAGCTGTGATAATTTTCAGAAGCATGAAAAATAAATTGGGGGGTCTTGCTATTTTTATAAACCAATTTCTTTTGATAGCAAGTCTCAAACAGTTTCAAAATTTCTAAAAGGCAGGCTTTCCAAAGGAAAAAGTAAGGTTTGCCCGAGAGATAGGTTTTTTCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCATAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACGATGAATTATGARAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAACAGTTCGCAGCTCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGATAGCAAGTCTCAAACAG</pcr_primer_p1>
		<pcr_primer_p2>CGAACTGTTGGAGTTAAATTATG</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TTTGATAGCAAGTCTCAAACAGTTTCAAAATTTCTAAAAGGCAGGCTTTCCAAAGGAAAAAGTAAGGTTTGCCCGAGAGATAGGTTTTTTCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCATAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACGATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAACAGTTCG</canonical_amplicon>
		<polymorphic_amplicon>TTTGATAGCAAGTCTCAAACAGTTTCAAAATTTCTAAAAGGCAGGCTTTCCAAAGGAAAAAGTAAGGTTTGCCCGAGAGATAGGTTTTTTCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCATAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACGATGAATTATGARAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAACAGTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24709</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>21987</contig_pos>
        <strand>+</strand>
        <context>CAGTGAATTT[C/T]GCAAAAGAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACGGGTTTCATGACGATGAATTATGAGAACAATACCATCCAGTGAATTT</left_flank>
        <right_flank>GCAAAAGAACATAATTTAACTCCAACAGTTCGCAGCTCATCAAGATGATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTGCATTCGCCTTTTCAGTAGTTTGATTAACGATTTCAGACGATAAATCGACTAAGACAGTGTTTCCTGATGGGAGGGGCAAATGAGAATATTGGACTCTTGAAGAGATTGAACCATCGTTTAGGAACACATCAAAAAATAGGAAAGAACCGATAATTATTAAGCCTAATTGGAAATAATTGTTCATCTGAAAATGTTTTACTAAGCTGTGATAATTTTCAGAAGCATGAAAAATAAATTGGGGGGTCTTGCTATTTTTATAAACCAATTTCTTTTGATAGCAAGTCTCAAACAGTTTCAAAATTTCTAAAAGGCAGGCTTTCCAAAGGAAAAAGTAAGGTTTGCCCGAGAGATAGGTTTTTTCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCATAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACGATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAACAGTTCGCAGCTCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATT</canonical>
            <polymorphic>GACTGCATTCGCCTTTTCAGTAGTTTGATTAACGATTTCAGACGATAAATCGACTAAGACAGTGTTTCCTGATGGGAGGGGCAAATGAGAATATTGGACTCTTGAAGAGATTGAACCATCGTTTAGGAACACATCAAAAAATAGGAAAGAACCGATAATTATTAAGCCTAATTGGAAATAATTGTTCATCTGAAAATGTTTTACTAAGCTGTGATAATTTTCAGAAGCATGAAAAATAAATTGGGGGGTCTTGCTATTTTTATAAACCAATTTCTTTTGATAGCAAGTCTCAAACAGTTTCAAAATTTCTAAAAGGCAGGCTTTCCAAAGGAAAAAGTAAGGTTTGCCCGAGAGATAGGTTTTTTCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCATAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACGATGAATTATGAGAACAATACCATCCAGTGAATTTYGCAAAAGAACATAATTTAACTCCAACAGTTCGCAGCTCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTTCCAAAGGAAAAAGTAA</pcr_primer_p1>
		<pcr_primer_p2>AGGATCTCATGGTCATCATCT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GCTTTCCAAAGGAAAAAGTAAGGTTTGCCCGAGAGATAGGTTTTTTCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCATAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACGATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAACAGTTCGCAGCTCATCAAGATGATGACCATGAGATCCT</canonical_amplicon>
		<polymorphic_amplicon>GCTTTCCAAAGGAAAAAGTAAGGTTTGCCCGAGAGATAGGTTTTTTCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCATAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACGATGAATTATGAGAACAATACCATCCAGTGAATTTYGCAAAAGAACATAATTTAACTCCAACAGTTCGCAGCTCATCAAGATGATGACCATGAGATCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24710</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>22087</contig_pos>
        <strand></strand>
        <context>TCTTCAAAAA[T/C]CGACTGGGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAA</left_flank>
        <right_flank>CGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTGAAGAGATTGAACCATCGTTTAGGAACACATCAAAAAATAGGAAAGAACCGATAATTATTAAGCCTAATTGGAAATAATTGTTCATCTGAAAATGTTTTACTAAGCTGTGATAATTTTCAGAAGCATGAAAAATAAATTGGGGGGTCTTGCTATTTTTATAAACCAATTTCTTTTGATAGCAAGTCTCAAACAGTTTCAAAATTTCTAAAAGGCAGGCTTTCCAAAGGAAAAAGTAAGGTTTGCCCGAGAGATAGGTTTTTTCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCATAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACGATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAACAGTTCGCAGCTCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTG</canonical>
            <polymorphic>CTTGAAGAGATTGAACCATCGTTTAGGAACACATCAAAAAATAGGAAAGAACCGATAATTATTAAGCCTAATTGGAAATAATTGTTCATCTGAAAATGTTTTACTAAGCTGTGATAATTTTCAGAAGCATGAAAAATAAATTGGGGGGTCTTGCTATTTTTATAAACCAATTTCTTTTGATAGCAAGTCTCAAACAGTTTCAAAATTTCTAAAAGGCAGGCTTTCCAAAGGAAAAAGTAAGGTTTGCCCGAGAGATAGGTTTTTTCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCATAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACGATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAACAGTTCGCAGCTCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAAYCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 312 104 78 5</canonical_bands>
                <polymorphic_bands>579 312 104 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAAGATGATGACCATGAGAT</pcr_primer_p1>
		<pcr_primer_p2>TGTAATTGGTTCTATTGGAAATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACA</canonical_amplicon>
		<polymorphic_amplicon>ATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAAYCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24711</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>22233</contig_pos>
        <strand></strand>
        <context>TCTTGCACTA[C/G]AGTTTTCGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTA</left_flank>
        <right_flank>AGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTCTTGCTATTTTTATAAACCAATTTCTTTTGATAGCAAGTCTCAAACAGTTTCAAAATTTCTAAAAGGCAGGCTTTCCAAAGGAAAAAGTAAGGTTTGCCCGAGAGATAGGTTTTTTCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCATAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACGATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAACAGTTCGCAGCTCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTGGAATTCAACCATTTCTGTCCCCATTTTCCCAGAGTTTGGTCTCGATAGTGTCTGAAACATAGCATCATATTTCTACTCCAATAAAAAGTGCAATCACCTGACCAACCCCTCCTCGGGGGCCAATTCGTGTAGATGGTATCCTTTTC</canonical>
            <polymorphic>GGTCTTGCTATTTTTATAAACCAATTTCTTTTGATAGCAAGTCTCAAACAGTTTCAAAATTTCTAAAAGGCAGGCTTTCCAAAGGAAAAAGTAAGGTTTGCCCGAGAGATAGGTTTTTTCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCATAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACGATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAACAGTTCGCAGCTCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTASAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTGGAATTCAACCATTTCTGTCCCCATTTTCCCAGAGTTTGGTCTCGATAGTGTCTGAAACATAGCATCATATTTCTACTCCAATAAAAAGTGCAATCACCTGACCAACCCCTCCTCGGGGGCCAATTCGTGTAGATGGTATCCTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>428 231 159 71 61 50</canonical_bands>
                <polymorphic_bands>428 231 230 61 50</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCGGCCTTCTTTTAGAT</pcr_primer_p1>
		<pcr_primer_p2>ATTCAATCGGAAAGTTTAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAAT</canonical_amplicon>
		<polymorphic_amplicon>ATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTASAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24712</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>22287</contig_pos>
        <strand></strand>
        <context>TGCCTAGGTT[T/A]TTTACATTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTT</left_flank>
        <right_flank>TTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAATTTCTAAAAGGCAGGCTTTCCAAAGGAAAAAGTAAGGTTTGCCCGAGAGATAGGTTTTTTCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCATAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACGATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAACAGTTCGCAGCTCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTGGAATTCAACCATTTCTGTCCCCATTTTCCCAGAGTTTGGTCTCGATAGTGTCTGAAACATAGCATCATATTTCTACTCCAATAAAAAGTGCAATCACCTGACCAACCCCTCCTCGGGGGCCAATTCGTGTAGATGGTATCCTTTTCCAGGGAAGAATTCGGTAACACTATGGACCCACATAATGAAAACTTTTGAAGTGT</canonical>
            <polymorphic>CAAAATTTCTAAAAGGCAGGCTTTCCAAAGGAAAAAGTAAGGTTTGCCCGAGAGATAGGTTTTTTCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCATAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACGATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAACAGTTCGCAGCTCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTWTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTGGAATTCAACCATTTCTGTCCCCATTTTCCCAGAGTTTGGTCTCGATAGTGTCTGAAACATAGCATCATATTTCTACTCCAATAAAAAGTGCAATCACCTGACCAACCCCTCCTCGGGGGCCAATTCGTGTAGATGGTATCCTTTTCCAGGGAAGAATTCGGTAACACTATGGACCCACATAATGAAAACTTTTGAAGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCGGCCTTCTTTTAGAT</pcr_primer_p1>
		<pcr_primer_p2>ATTCAATCGGAAAGTTTAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAAT</canonical_amplicon>
		<polymorphic_amplicon>ATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTWTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24713</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>22304</contig_pos>
        <strand></strand>
        <context>TTCCAATTTA[C/T]TGTTTCWCYA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTA</left_flank>
        <right_flank>TGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGCTTTCCAAAGGAAAAAGTAAGGTTTGCCCGAGAGATAGGTTTTTTCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCATAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACGATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAACAGTTCGCAGCTCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTGGAATTCAACCATTTCTGTCCCCATTTTCCCAGAGTTTGGTCTCGATAGTGTCTGAAACATAGCATCATATTTCTACTCCAATAAAAAGTGCAATCACCTGACCAACCCCTCCTCGGGGGCCAATTCGTGTAGATGGTATCCTTTTCCAGGGAAGAATTCGGTAACACTATGGACCCACATAATGAAAACTTTTGAAGTGTCCACAATACATTTTGCA</canonical>
            <polymorphic>AGGCTTTCCAAAGGAAAAAGTAAGGTTTGCCCGAGAGATAGGTTTTTTCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCATAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACGATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAACAGTTCGCAGCTCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTAYTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTGGAATTCAACCATTTCTGTCCCCATTTTCCCAGAGTTTGGTCTCGATAGTGTCTGAAACATAGCATCATATTTCTACTCCAATAAAAAGTGCAATCACCTGACCAACCCCTCCTCGGGGGCCAATTCGTGTAGATGGTATCCTTTTCCAGGGAAGAATTCGGTAACACTATGGACCCACATAATGAAAACTTTTGAAGTGTCCACAATACATTTTGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>499 210 159 71 61</canonical_bands>
                <polymorphic_bands>570 210 159 61</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTTCCAATAGAACCAATTACA</pcr_primer_p1>
		<pcr_primer_p2>AATCGATTTGATTGAATTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>CATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATT</canonical_amplicon>
		<polymorphic_amplicon>CATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTAYTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24714</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>22311</contig_pos>
        <strand></strand>
        <context>TTAYTGTTTC[T/A]CYAAAATTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTC</left_flank>
        <right_flank>CCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAAGGAAAAAGTAAGGTTTGCCCGAGAGATAGGTTTTTTCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCATAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACGATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAACAGTTCGCAGCTCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTGGAATTCAACCATTTCTGTCCCCATTTTCCCAGAGTTTGGTCTCGATAGTGTCTGAAACATAGCATCATATTTCTACTCCAATAAAAAGTGCAATCACCTGACCAACCCCTCCTCGGGGGCCAATTCGTGTAGATGGTATCCTTTTCCAGGGAAGAATTCGGTAACACTATGGACCCACATAATGAAAACTTTTGAAGTGTCCACAATACATTTTGCAGTGTGCC</canonical>
            <polymorphic>CCAAAGGAAAAAGTAAGGTTTGCCCGAGAGATAGGTTTTTTCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCATAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACGATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAACAGTTCGCAGCTCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCWCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTGGAATTCAACCATTTCTGTCCCCATTTTCCCAGAGTTTGGTCTCGATAGTGTCTGAAACATAGCATCATATTTCTACTCCAATAAAAAGTGCAATCACCTGACCAACCCCTCCTCGGGGGCCAATTCGTGTAGATGGTATCCTTTTCCAGGGAAGAATTCGGTAACACTATGGACCCACATAATGAAAACTTTTGAAGTGTCCACAATACATTTTGCAGTGTGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTCCAATAGAACCAATTACA</pcr_primer_p1>
		<pcr_primer_p2>AATCGATTTGATTGAATTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>CATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATT</canonical_amplicon>
		<polymorphic_amplicon>CATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCWCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24715</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>22313</contig_pos>
        <strand></strand>
        <context>AYTGTTTCWC[C/T]AAAATTCCCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTC</left_flank>
        <right_flank>AAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGGAAAAAGTAAGGTTTGCCCGAGAGATAGGTTTTTTCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCATAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACGATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAACAGTTCGCAGCTCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTGGAATTCAACCATTTCTGTCCCCATTTTCCCAGAGTTTGGTCTCGATAGTGTCTGAAACATAGCATCATATTTCTACTCCAATAAAAAGTGCAATCACCTGACCAACCCCTCCTCGGGGGCCAATTCGTGTAGATGGTATCCTTTTCCAGGGAAGAATTCGGTAACACTATGGACCCACATAATGAAAACTTTTGAAGTGTCCACAATACATTTTGCAGTGTGCCCG</canonical>
            <polymorphic>AAAGGAAAAAGTAAGGTTTGCCCGAGAGATAGGTTTTTTCTGCAACAAAATTTTATTGCAAGGGTTTCGCTGTAAGCGTTTATGATCATAAACAAGCTACGCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACGATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAACAGTTCGCAGCTCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCYAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTGGAATTCAACCATTTCTGTCCCCATTTTCCCAGAGTTTGGTCTCGATAGTGTCTGAAACATAGCATCATATTTCTACTCCAATAAAAAGTGCAATCACCTGACCAACCCCTCCTCGGGGGCCAATTCGTGTAGATGGTATCCTTTTCCAGGGAAGAATTCGGTAACACTATGGACCCACATAATGAAAACTTTTGAAGTGTCCACAATACATTTTGCAGTGTGCCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTCCAATAGAACCAATTACA</pcr_primer_p1>
		<pcr_primer_p2>AATCGATTTGATTGAATTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>CATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATT</canonical_amplicon>
		<polymorphic_amplicon>CATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCYAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24716</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>22413</contig_pos>
        <strand>+</strand>
        <context>aaatttttat[C/T]TTTCAAAAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTAT</left_flank>
        <right_flank>TTTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACGATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAACAGTTCGCAGCTCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTGGAATTCAACCATTTCTGTCCCCATTTTCCCAGAGTTTGGTCTCGATAGTGTCTGAAACATAGCATCATATTTCTACTCCAATAAAAAGTGCAATCACCTGACCAACCCCTCCTCGGGGGCCAATTCGTGTAGATGGTATCCTTTTCCAGGGAAGAATTCGGTAACACTATGGACCCACATAATGAAAACTTTTGAAGTGTCCACAATACATTTTGCAGTGTGCCCGACTGGACCGATTCCCGTAGAGTTATGAAATCGATGGGTGGGCATCCATGTGTCAATCTAGAAATACAATGGAATTGAAGACATGCTGGTGGTGTAATCAT</canonical>
            <polymorphic>GCAACGGGTTTCATGACAATGAAAACGGGTTTCATGACGATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAACAGTTCGCAGCTCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATYTTTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTGGAATTCAACCATTTCTGTCCCCATTTTCCCAGAGTTTGGTCTCGATAGTGTCTGAAACATAGCATCATATTTCTACTCCAATAAAAAGTGCAATCACCTGACCAACCCCTCCTCGGGGGCCAATTCGTGTAGATGGTATCCTTTTCCAGGGAAGAATTCGGTAACACTATGGACCCACATAATGAAAACTTTTGAAGTGTCCACAATACATTTTGCAGTGTGCCCGACTGGACCGATTCCCGTAGAGTTATGAAATCGATGGGTGGGCATCCATGTGTCAATCTAGAAATACAATGGAATTGAAGACATGCTGGTGGTGTAATCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTACAGCTGCCTAGGTT</pcr_primer_p1>
		<pcr_primer_p2>AGAGAAGGGCAAGATATGTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCT</canonical_amplicon>
		<polymorphic_amplicon>CAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATYTTTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24717</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>22448</contig_pos>
        <strand>+</strand>
        <context>AAACATTAAT[A/G]AAACAGGATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAAT</left_flank>
        <right_flank>AAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACAT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAACAGTTCGCAGCTCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTGGAATTCAACCATTTCTGTCCCCATTTTCCCAGAGTTTGGTCTCGATAGTGTCTGAAACATAGCATCATATTTCTACTCCAATAAAAAGTGCAATCACCTGACCAACCCCTCCTCGGGGGCCAATTCGTGTAGATGGTATCCTTTTCCAGGGAAGAATTCGGTAACACTATGGACCCACATAATGAAAACTTTTGAAGTGTCCACAATACATTTTGCAGTGTGCCCGACTGGACCGATTCCCGTAGAGTTATGAAATCGATGGGTGGGCATCCATGTGTCAATCTAGAAATACAATGGAATTGAAGACATGCTGGTGGTGTAATCATAGGCAAGGCTGTCGAAAATGACGGCCGGCCGGACG</canonical>
            <polymorphic>GACGATGAATTATGAGAACAATACCATCCAGTGAATTTCGCAAAAGAACATAATTTAACTCCAACAGTTCGCAGCTCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATRAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTGGAATTCAACCATTTCTGTCCCCATTTTCCCAGAGTTTGGTCTCGATAGTGTCTGAAACATAGCATCATATTTCTACTCCAATAAAAAGTGCAATCACCTGACCAACCCCTCCTCGGGGGCCAATTCGTGTAGATGGTATCCTTTTCCAGGGAAGAATTCGGTAACACTATGGACCCACATAATGAAAACTTTTGAAGTGTCCACAATACATTTTGCAGTGTGCCCGACTGGACCGATTCCCGTAGAGTTATGAAATCGATGGGTGGGCATCCATGTGTCAATCTAGAAATACAATGGAATTGAAGACATGCTGGTGGTGTAATCATAGGCAAGGCTGTCGAAAATGACGGCCGGCCGGACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTACAGCTGCCTAGGTT</pcr_primer_p1>
		<pcr_primer_p2>AGAGAAGGGCAAGATATGTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCT</canonical_amplicon>
		<polymorphic_amplicon>CAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATRAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24718</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>22488</contig_pos>
        <strand></strand>
        <context>CAAATCGATT[T/C]CCATAAACAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATT</left_flank>
        <right_flank>CCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAGAACATAATTTAACTCCAACAGTTCGCAGCTCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTGGAATTCAACCATTTCTGTCCCCATTTTCCCAGAGTTTGGTCTCGATAGTGTCTGAAACATAGCATCATATTTCTACTCCAATAAAAAGTGCAATCACCTGACCAACCCCTCCTCGGGGGCCAATTCGTGTAGATGGTATCCTTTTCCAGGGAAGAATTCGGTAACACTATGGACCCACATAATGAAAACTTTTGAAGTGTCCACAATACATTTTGCAGTGTGCCCGACTGGACCGATTCCCGTAGAGTTATGAAATCGATGGGTGGGCATCCATGTGTCAATCTAGAAATACAATGGAATTGAAGACATGCTGGTGGTGTAATCATAGGCAAGGCTGTCGAAAATGACGGCCGGCCGGACGTGCGGGGCCGAGGGAAACTTCATTCGAAATGAAAATGCTC</canonical>
            <polymorphic>CAAAAGAACATAATTTAACTCCAACAGTTCGCAGCTCATCAAGATGATGACCATGAGATCCTTGCAAGCCACCACATCCCAACCACCGTCTTCAAAAATCGACTGGGATTTCGGCCTTCTTTTAGATCCCGCTCAATCTGAAGCCTCGCTCCTTTCCCTACTCCTGTGCCCTGGCATCGAATCGAAAGTCACCGATGACTTCAGATCCCGACGCATCACGATGAGCCGTCAGAATCTTGCACTACAGTTTTCGCTCCCTTCCCCATTTCCAATAGAACCAATTACAGCTGCCTAGGTTTTTTACATTCCAATTTACTGTTTCTCCAAAATTCCCCAACTAAACTTTCCGATTGAATTGCTCACGGGTTGCACCCATTCCGTTACATTTCTTTCTTTGATTATGATTTTTATAATAAATTTTTATCTTTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTYCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTGGAATTCAACCATTTCTGTCCCCATTTTCCCAGAGTTTGGTCTCGATAGTGTCTGAAACATAGCATCATATTTCTACTCCAATAAAAAGTGCAATCACCTGACCAACCCCTCCTCGGGGGCCAATTCGTGTAGATGGTATCCTTTTCCAGGGAAGAATTCGGTAACACTATGGACCCACATAATGAAAACTTTTGAAGTGTCCACAATACATTTTGCAGTGTGCCCGACTGGACCGATTCCCGTAGAGTTATGAAATCGATGGGTGGGCATCCATGTGTCAATCTAGAAATACAATGGAATTGAAGACATGCTGGTGGTGTAATCATAGGCAAGGCTGTCGAAAATGACGGCCGGCCGGACGTGCGGGGCCGAGGGAAACTTCATTCGAAATGAAAATGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAAAAACATAAATGGTACCTAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAATATGATGCTATGTTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTTCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTGGAATTCAACCATTTCTGTCCCCATTTTCCCAGAGTTTGGTCTCGATAGTGTCTGAAACATAGCATCATATTTCT</canonical_amplicon>
		<polymorphic_amplicon>TTCAAAAACATAAATGGTACCTAAAACATTAATGAAACAGGATCCACAATTTCAAAATTCAATCAAATCGATTYCCATAAACATATCTTGCCCTTCTCTTCACATTTGTCGTCAATTTCCCCAAATACTTTTTGGGATAATCCGTCATTCGTAATGGACCAAACTTGAGTGTGGAATTCAACCATTTCTGTCCCCATTTTCCCAGAGTTTGGTCTCGATAGTGTCTGAAACATAGCATCATATTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24719</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>32929</contig_pos>
        <strand></strand>
        <context>aaatttttaa[A/T]atctctgata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAACATTGCTGATAATGAGACACACATTTTATCAGTTGACAAATTTTTAA</left_flank>
        <right_flank>ATCTCTGATAGGAACCGAGATAATAAAATACTATTTGAACAGTTACGGTA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATAACTTCTAAAAATGCTAGACTTCAGACCCAAGATTTCATTTTTGGTGTGACGTCTTCACAAATTGAATATCCATTTCAGATCTTACGAATTCTAATAATTACCCTTTAAACTAAGTACCGTAAGTGCTCTAATAGACCTTATAATTGGACCTTCGAGCCCAATTATCTTGGTTCCTATAAAAATCTTGTGCCTGATTTTCATATTTTTATTACGACATTTTAAACAACTATAGAAAACAGAATCCAGAGGTTTTATCTATTTTTAAAATCCCATTAAATTTTCATGGTGATCTTTTTCTTTTTATTTCGAGAGCTTGAACTTTATAAGACAAAAAAGCAAACAATGGTTAACATATTAGCACAGTTTAGGAGCCCACGAAAAATGTCAACTTTGAGCTCAATTAGCTCGGTTCTAGTTAAAGATATCAAAATTTTATCAACTAGTAAAACATTGCTGATAATGAGACACACATTTTATCAGTTGACAAATTTTTAAAATCTCTGATAGGAACCGAGATAATAAAATACTATTTGAACAGTTACGGTATATGTTCTGGTGTTCATTAACCCCAAAATAAATCTGTGAAATTTCGGAAAATAGTCTATGAACTCCGGTGCACATATTTACTTTGTTTCTGGAATGAAAAAGAAAGCAAATGTTTGTTTTCAATGAACTCTGCTCTTTAAAACCACACCGCTTTTTCAAAATTATCTCCAGGACCCATCTATGATGTATGGGGGTTTAAAGAAATGAAATGCGGGTGGGTGACGATGGAATTGAGATTTTTTGTTTCGGTGTTTTATATATTTGTTCTTCTGAAGGATGGGGGTTGTTGAACAGAATTTTCTTTAGTTTCAGAACTTAAAAAATGAATTTATTATTGAAAAAATGTTACTTAAAGATATGTCCAAAGTTACAAAATTCGAGTAAAAGGGAAATTCGAAAAATTCCTCTCCACTTTCCGGATCTATGAACATTCAAAGTTTGAACTTGGAA</canonical>
            <polymorphic>TATAACTTCTAAAAATGCTAGACTTCAGACCCAAGATTTCATTTTTGGTGTGACGTCTTCACAAATTGAATATCCATTTCAGATCTTACGAATTCTAATAATTACCCTTTAAACTAAGTACCGTAAGTGCTCTAATAGACCTTATAATTGGACCTTCGAGCCCAATTATCTTGGTTCCTATAAAAATCTTGTGCCTGATTTTCATATTTTTATTACGACATTTTAAACAACTATAGAAAACAGAATCCAGAGGTTTTATCTATTTTTAAAATCCCATTAAATTTTCATGGTGATCTTTTTCTTTTTATTTCGAGAGCTTGAACTTTATAAGACAAAAAAGCAAACAATGGTTAACATATTAGCACAGTTTAGGAGCCCACGAAAAATGTCAACTTTGAGCTCAATTAGCTCGGTTCTAGTTAAAGATATCAAAATTTTATCAACTAGTAAAACATTGCTGATAATGAGACACACATTTTATCAGTTGACAAATTTTTAAWATCTCTGATAGGAACCGAGATAATAAAATACTATTTGAACAGTTACGGTATATGTTCTGGTGTTCATTAACCCCAAAATAAATCTGTGAAATTTCGGAAAATAGTCTATGAACTCCGGTGCACATATTTACTTTGTTTCTGGAATGAAAAAGAAAGCAAATGTTTGTTTTCAATGAACTCTGCTCTTTAAAACCACACCGCTTTTTCAAAATTATCTCCAGGACCCATCTATGATGTATGGGGGTTTAAAGAAATGAAATGCGGGTGGGTGACGATGGAATTGAGATTTTTTGTTTCGGTGTTTTATATATTTGTTCTTCTGAAGGATGGGGGTTGTTGAACAGAATTTTCTTTAGTTTCAGAACTTAAAAAATGAATTTATTATTGAAAAAATGTTACTTAAAGATATGTCCAAAGTTACAAAATTCGAGTAAAAGGGAAATTCGAAAAATTCCTCTCCACTTTCCGGATCTATGAACATTCAAAGTTTGAACTTGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>253 230 191 114 110 59 43</canonical_bands>
                <polymorphic_bands>421 253 114 110 59 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAGAGCTTGAACTTTATAAGAC</pcr_primer_p1>
		<pcr_primer_p2>ACACCAGAACATATACCGTAACT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CGAGAGCTTGAACTTTATAAGACAAAAAAGCAAACAATGGTTAACATATTAGCACAGTTTAGGAGCCCACGAAAAATGTCAACTTTGAGCTCAATTAGCTCGGTTCTAGTTAAAGATATCAAAATTTTATCAACTAGTAAAACATTGCTGATAATGAGACACACATTTTATCAGTTGACAAATTTTTAAAATCTCTGATAGGAACCGAGATAATAAAATACTATTTGAACAGTTACGGTATATGTTCTGGTGT</canonical_amplicon>
		<polymorphic_amplicon>CGAGAGCTTGAACTTTATAAGACAAAAAAGCAAACAATGGTTAACATATTAGCACAGTTTAGGAGCCCACGAAAAATGTCAACTTTGAGCTCAATTAGCTCGGTTCTAGTTAAAGATATCAAAATTTTATCAACTAGTAAAACATTGCTGATAATGAGACACACATTTTATCAGTTGACAAATTTTTAAWATCTCTGATAGGAACCGAGATAATAAAATACTATTTGAACAGTTACGGTATATGTTCTGGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24720</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>48041</contig_pos>
        <strand></strand>
        <context>tcaattatct[C/T]ggttcctatg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGTTAAAGTGTTTACGGTTACAAACGCTGCACTAAAAACTCAATTATCT</left_flank>
        <right_flank>GGTTCCTATGAGAGATACCAAAAATCTGTCAATTGATAAAACATTCATCA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCATCGAGTTCTTGATGGAGTTTCTTCTGACACTCTGGATTGAAGCCGAGCCAGAGAATCGTGAATCCGATTCCACTTGACGTGGTGTCATGCCCTTCGAACATGAAAGTGTCCACTTCTTCACGAATATCTTCATCTGACAGTGTTCCTTTTTCTTTTTGAATTGTAAGGAGAAGATCCAAAAATGCTTTTCTTTTCCTGCTATTCTCCTCATTCTCCTCTTTCAGCAACTCTTTTCGATCATGGATAACCTGAAAAATTATTCGTGAGATTCTGTATGCGCACTTCTAGCTCAATTATCTCGCTTCCTTTAAGAGCTATCAAGAATCTGTGAACTGGTAAAATTTTAGTGATATTATAATAAATATTTTCTCAATTAACAAACTTTTGGTATTTCTTATGAGAACCGAGATAATTGAGCTCAAAGTTGACGGTATGGGTGGGGTTGTGTTAAAGTGTTTACGGTTACAAACGCTGCACTAAAAACTCAATTATCTCGGTTCCTATGAGAGATACCAAAAATCTGTCAATTGATAAAACATTCATCATAATATCACCAATATTTTATTATTTGACACATTTTTAATATCTCTCCTAGGAACCGAGTTTACGGTATTTTTGGAGTATTTATGCTCAAATTGAGCCCCTGTACTTTGAGCTCAATTATCTCGCTTGCTATAAAAGGTAACAAATATTCGTCAATTGATAAATTACTTATCATATTATAACCAATATTTTTTCAATTGACAGATTTTTGACATCTTTTATAGGAGCCGAGATAAATGAACTCAAAGTTGACAGTATTTTTTGAGTTTTATGCTCAAATTGAGCCCCTGCACTTTGAGATTAATTATCTCGCTTCCTTTAAGAGCAATCAAAAATTTGTAAACTAATAAAATATTGGTGATATTATAAAAAACATTTTGCCAGTTGACAATTTTTTGATATCTTGCACAGGAACCGAGATAAGTGAGCTTTCGAGCAACCATTTACGATAA</canonical>
            <polymorphic>CTTCATCGAGTTCTTGATGGAGTTTCTTCTGACACTCTGGATTGAAGCCGAGCCAGAGAATCGTGAATCCGATTCCACTTGACGTGGTGTCATGCCCTTCGAACATGAAAGTGTCCACTTCTTCACGAATATCTTCATCTGACAGTGTTCCTTTTTCTTTTTGAATTGTAAGGAGAAGATCCAAAAATGCTTTTCTTTTCCTGCTATTCTCCTCATTCTCCTCTTTCAGCAACTCTTTTCGATCATGGATAACCTGAAAAATTATTCGTGAGATTCTGTATGCGCACTTCTAGCTCAATTATCTCGCTTCCTTTAAGAGCTATCAAGAATCTGTGAACTGGTAAAATTTTAGTGATATTATAATAAATATTTTCTCAATTAACAAACTTTTGGTATTTCTTATGAGAACCGAGATAATTGAGCTCAAAGTTGACGGTATGGGTGGGGTTGTGTTAAAGTGTTTACGGTTACAAACGCTGCACTAAAAACTCAATTATCTYGGTTCCTATGAGAGATACCAAAAATCTGTCAATTGATAAAACATTCATCATAATATCACCAATATTTTATTATTTGACACATTTTTAATATCTCTCCTAGGAACCGAGTTTACGGTATTTTTGGAGTATTTATGCTCAAATTGAGCCCCTGTACTTTGAGCTCAATTATCTCGCTTGCTATAAAAGGTAACAAATATTCGTCAATTGATAAATTACTTATCATATTATAACCAATATTTTTTCAATTGACAGATTTTTGACATCTTTTATAGGAGCCGAGATAAATGAACTCAAAGTTGACAGTATTTTTTGAGTTTTATGCTCAAATTGAGCCCCTGCACTTTGAGATTAATTATCTCGCTTCCTTTAAGAGCAATCAAAAATTTGTAAACTAATAAAATATTGGTGATATTATAAAAAACATTTTGCCAGTTGACAATTTTTTGATATCTTGCACAGGAACCGAGATAAGTGAGCTTTCGAGCAACCATTTACGATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAATTATTCGTGAGATTCTG</pcr_primer_p1>
		<pcr_primer_p2>TTGAGCATAAATACTCCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>384</pcr_amplicon_size>
		<canonical_amplicon>GAAAAATTATTCGTGAGATTCTGTATGCGCACTTCTAGCTCAATTATCTCGCTTCCTTTAAGAGCTATCAAGAATCTGTGAACTGGTAAAATTTTAGTGATATTATAATAAATATTTTCTCAATTAACAAACTTTTGGTATTTCTTATGAGAACCGAGATAATTGAGCTCAAAGTTGACGGTATGGGTGGGGTTGTGTTAAAGTGTTTACGGTTACAAACGCTGCACTAAAAACTCAATTATCTCGGTTCCTATGAGAGATACCAAAAATCTGTCAATTGATAAAACATTCATCATAATATCACCAATATTTTATTATTTGACACATTTTTAATATCTCTCCTAGGAACCGAGTTTACGGTATTTTTGGAGTATTTATGCTCAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAATTATTCGTGAGATTCTGTATGCGCACTTCTAGCTCAATTATCTCGCTTCCTTTAAGAGCTATCAAGAATCTGTGAACTGGTAAAATTTTAGTGATATTATAATAAATATTTTCTCAATTAACAAACTTTTGGTATTTCTTATGAGAACCGAGATAATTGAGCTCAAAGTTGACGGTATGGGTGGGGTTGTGTTAAAGTGTTTACGGTTACAAACGCTGCACTAAAAACTCAATTATCTYGGTTCCTATGAGAGATACCAAAAATCTGTCAATTGATAAAACATTCATCATAATATCACCAATATTTTATTATTTGACACATTTTTAATATCTCTCCTAGGAACCGAGTTTACGGTATTTTTGGAGTATTTATGCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24721</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>48090</contig_pos>
        <strand></strand>
        <context>aaacattcat[C/T]ataatatcac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGGTTCCTATGAGAGATACCAAAAATCTGTCAATTGATAAAACATTCAT</left_flank>
        <right_flank>ATAATATCACCAATATTTTATTATTTGACACATTTTTAATATCTCTCCTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCCAGAGAATCGTGAATCCGATTCCACTTGACGTGGTGTCATGCCCTTCGAACATGAAAGTGTCCACTTCTTCACGAATATCTTCATCTGACAGTGTTCCTTTTTCTTTTTGAATTGTAAGGAGAAGATCCAAAAATGCTTTTCTTTTCCTGCTATTCTCCTCATTCTCCTCTTTCAGCAACTCTTTTCGATCATGGATAACCTGAAAAATTATTCGTGAGATTCTGTATGCGCACTTCTAGCTCAATTATCTCGCTTCCTTTAAGAGCTATCAAGAATCTGTGAACTGGTAAAATTTTAGTGATATTATAATAAATATTTTCTCAATTAACAAACTTTTGGTATTTCTTATGAGAACCGAGATAATTGAGCTCAAAGTTGACGGTATGGGTGGGGTTGTGTTAAAGTGTTTACGGTTACAAACGCTGCACTAAAAACTCAATTATCTCGGTTCCTATGAGAGATACCAAAAATCTGTCAATTGATAAAACATTCATCATAATATCACCAATATTTTATTATTTGACACATTTTTAATATCTCTCCTAGGAACCGAGTTTACGGTATTTTTGGAGTATTTATGCTCAAATTGAGCCCCTGTACTTTGAGCTCAATTATCTCGCTTGCTATAAAAGGTAACAAATATTCGTCAATTGATAAATTACTTATCATATTATAACCAATATTTTTTCAATTGACAGATTTTTGACATCTTTTATAGGAGCCGAGATAAATGAACTCAAAGTTGACAGTATTTTTTGAGTTTTATGCTCAAATTGAGCCCCTGCACTTTGAGATTAATTATCTCGCTTCCTTTAAGAGCAATCAAAAATTTGTAAACTAATAAAATATTGGTGATATTATAAAAAACATTTTGCCAGTTGACAATTTTTTGATATCTTGCACAGGAACCGAGATAAGTGAGCTTTCGAGCAACCATTTACGATAAGTTATCTTACCATTCTCACAAAATCATTGGTCAATTTCACATTTCGATC</canonical>
            <polymorphic>GAGCCAGAGAATCGTGAATCCGATTCCACTTGACGTGGTGTCATGCCCTTCGAACATGAAAGTGTCCACTTCTTCACGAATATCTTCATCTGACAGTGTTCCTTTTTCTTTTTGAATTGTAAGGAGAAGATCCAAAAATGCTTTTCTTTTCCTGCTATTCTCCTCATTCTCCTCTTTCAGCAACTCTTTTCGATCATGGATAACCTGAAAAATTATTCGTGAGATTCTGTATGCGCACTTCTAGCTCAATTATCTCGCTTCCTTTAAGAGCTATCAAGAATCTGTGAACTGGTAAAATTTTAGTGATATTATAATAAATATTTTCTCAATTAACAAACTTTTGGTATTTCTTATGAGAACCGAGATAATTGAGCTCAAAGTTGACGGTATGGGTGGGGTTGTGTTAAAGTGTTTACGGTTACAAACGCTGCACTAAAAACTCAATTATCTCGGTTCCTATGAGAGATACCAAAAATCTGTCAATTGATAAAACATTCATYATAATATCACCAATATTTTATTATTTGACACATTTTTAATATCTCTCCTAGGAACCGAGTTTACGGTATTTTTGGAGTATTTATGCTCAAATTGAGCCCCTGTACTTTGAGCTCAATTATCTCGCTTGCTATAAAAGGTAACAAATATTCGTCAATTGATAAATTACTTATCATATTATAACCAATATTTTTTCAATTGACAGATTTTTGACATCTTTTATAGGAGCCGAGATAAATGAACTCAAAGTTGACAGTATTTTTTGAGTTTTATGCTCAAATTGAGCCCCTGCACTTTGAGATTAATTATCTCGCTTCCTTTAAGAGCAATCAAAAATTTGTAAACTAATAAAATATTGGTGATATTATAAAAAACATTTTGCCAGTTGACAATTTTTTGATATCTTGCACAGGAACCGAGATAAGTGAGCTTTCGAGCAACCATTTACGATAAGTTATCTTACCATTCTCACAAAATCATTGGTCAATTTCACATTTCGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAATTATTCGTGAGATTCTG</pcr_primer_p1>
		<pcr_primer_p2>TTGAGCATAAATACTCCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>384</pcr_amplicon_size>
		<canonical_amplicon>GAAAAATTATTCGTGAGATTCTGTATGCGCACTTCTAGCTCAATTATCTCGCTTCCTTTAAGAGCTATCAAGAATCTGTGAACTGGTAAAATTTTAGTGATATTATAATAAATATTTTCTCAATTAACAAACTTTTGGTATTTCTTATGAGAACCGAGATAATTGAGCTCAAAGTTGACGGTATGGGTGGGGTTGTGTTAAAGTGTTTACGGTTACAAACGCTGCACTAAAAACTCAATTATCTCGGTTCCTATGAGAGATACCAAAAATCTGTCAATTGATAAAACATTCATCATAATATCACCAATATTTTATTATTTGACACATTTTTAATATCTCTCCTAGGAACCGAGTTTACGGTATTTTTGGAGTATTTATGCTCAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAATTATTCGTGAGATTCTGTATGCGCACTTCTAGCTCAATTATCTCGCTTCCTTTAAGAGCTATCAAGAATCTGTGAACTGGTAAAATTTTAGTGATATTATAATAAATATTTTCTCAATTAACAAACTTTTGGTATTTCTTATGAGAACCGAGATAATTGAGCTCAAAGTTGACGGTATGGGTGGGGTTGTGTTAAAGTGTTTACGGTTACAAACGCTGCACTAAAAACTCAATTATCTCGGTTCCTATGAGAGATACCAAAAATCTGTCAATTGATAAAACATTCATYATAATATCACCAATATTTTATTATTTGACACATTTTTAATATCTCTCCTAGGAACCGAGTTTACGGTATTTTTGGAGTATTTATGCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24722</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>48138</contig_pos>
        <strand>+</strand>
        <context>aatatctctc[A/C]taggaaccga</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCATAATATCACCAATATTTTATTATTTGACACATTTTTAATATCTCTC</left_flank>
        <right_flank>TAGGAACCGAGTTTACGGTATTTTTGGAGTATTTATGCTCAAATTGAGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGAACATGAAAGTGTCCACTTCTTCACGAATATCTTCATCTGACAGTGTTCCTTTTTCTTTTTGAATTGTAAGGAGAAGATCCAAAAATGCTTTTCTTTTCCTGCTATTCTCCTCATTCTCCTCTTTCAGCAACTCTTTTCGATCATGGATAACCTGAAAAATTATTCGTGAGATTCTGTATGCGCACTTCTAGCTCAATTATCTCGCTTCCTTTAAGAGCTATCAAGAATCTGTGAACTGGTAAAATTTTAGTGATATTATAATAAATATTTTCTCAATTAACAAACTTTTGGTATTTCTTATGAGAACCGAGATAATTGAGCTCAAAGTTGACGGTATGGGTGGGGTTGTGTTAAAGTGTTTACGGTTACAAACGCTGCACTAAAAACTCAATTATCTCGGTTCCTATGAGAGATACCAAAAATCTGTCAATTGATAAAACATTCATCATAATATCACCAATATTTTATTATTTGACACATTTTTAATATCTCTCCTAGGAACCGAGTTTACGGTATTTTTGGAGTATTTATGCTCAAATTGAGCCCCTGTACTTTGAGCTCAATTATCTCGCTTGCTATAAAAGGTAACAAATATTCGTCAATTGATAAATTACTTATCATATTATAACCAATATTTTTTCAATTGACAGATTTTTGACATCTTTTATAGGAGCCGAGATAAATGAACTCAAAGTTGACAGTATTTTTTGAGTTTTATGCTCAAATTGAGCCCCTGCACTTTGAGATTAATTATCTCGCTTCCTTTAAGAGCAATCAAAAATTTGTAAACTAATAAAATATTGGTGATATTATAAAAAACATTTTGCCAGTTGACAATTTTTTGATATCTTGCACAGGAACCGAGATAAGTGAGCTTTCGAGCAACCATTTACGATAAGTTATCTTACCATTCTCACAAAATCATTGGTCAATTTCACATTTCGATCAAACTCAAATCCAAGACCCGTCAAGTACCAAATTGGTTTCAACCAAAG</canonical>
            <polymorphic>TTCGAACATGAAAGTGTCCACTTCTTCACGAATATCTTCATCTGACAGTGTTCCTTTTTCTTTTTGAATTGTAAGGAGAAGATCCAAAAATGCTTTTCTTTTCCTGCTATTCTCCTCATTCTCCTCTTTCAGCAACTCTTTTCGATCATGGATAACCTGAAAAATTATTCGTGAGATTCTGTATGCGCACTTCTAGCTCAATTATCTCGCTTCCTTTAAGAGCTATCAAGAATCTGTGAACTGGTAAAATTTTAGTGATATTATAATAAATATTTTCTCAATTAACAAACTTTTGGTATTTCTTATGAGAACCGAGATAATTGAGCTCAAAGTTGACGGTATGGGTGGGGTTGTGTTAAAGTGTTTACGGTTACAAACGCTGCACTAAAAACTCAATTATCTCGGTTCCTATGAGAGATACCAAAAATCTGTCAATTGATAAAACATTCATCATAATATCACCAATATTTTATTATTTGACACATTTTTAATATCTCTCMTAGGAACCGAGTTTACGGTATTTTTGGAGTATTTATGCTCAAATTGAGCCCCTGTACTTTGAGCTCAATTATCTCGCTTGCTATAAAAGGTAACAAATATTCGTCAATTGATAAATTACTTATCATATTATAACCAATATTTTTTCAATTGACAGATTTTTGACATCTTTTATAGGAGCCGAGATAAATGAACTCAAAGTTGACAGTATTTTTTGAGTTTTATGCTCAAATTGAGCCCCTGCACTTTGAGATTAATTATCTCGCTTCCTTTAAGAGCAATCAAAAATTTGTAAACTAATAAAATATTGGTGATATTATAAAAAACATTTTGCCAGTTGACAATTTTTTGATATCTTGCACAGGAACCGAGATAAGTGAGCTTTCGAGCAACCATTTACGATAAGTTATCTTACCATTCTCACAAAATCATTGGTCAATTTCACATTTCGATCAAACTCAAATCCAAGACCCGTCAAGTACCAAATTGGTTTCAACCAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCTAGG</site>
                <isoschizomers>
                    <enzyme>AvrII</enzyme>
                    <enzyme>BlnI</enzyme>
                    <enzyme>BspA2I</enzyme>
                    <enzyme>XmaJI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 307 193</canonical_bands>
                <polymorphic_bands>807 193</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTATTCGTGAGATTCTGTATGC</pcr_primer_p1>
		<pcr_primer_p2>TGATTTTGTGAGAATGGTAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>766</pcr_amplicon_size>
		<canonical_amplicon>ATTATTCGTGAGATTCTGTATGCGCACTTCTAGCTCAATTATCTCGCTTCCTTTAAGAGCTATCAAGAATCTGTGAACTGGTAAAATTTTAGTGATATTATAATAAATATTTTCTCAATTAACAAACTTTTGGTATTTCTTATGAGAACCGAGATAATTGAGCTCAAAGTTGACGGTATGGGTGGGGTTGTGTTAAAGTGTTTACGGTTACAAACGCTGCACTAAAAACTCAATTATCTCGGTTCCTATGAGAGATACCAAAAATCTGTCAATTGATAAAACATTCATCATAATATCACCAATATTTTATTATTTGACACATTTTTAATATCTCTCCTAGGAACCGAGTTTACGGTATTTTTGGAGTATTTATGCTCAAATTGAGCCCCTGTACTTTGAGCTCAATTATCTCGCTTGCTATAAAAGGTAACAAATATTCGTCAATTGATAAATTACTTATCATATTATAACCAATATTTTTTCAATTGACAGATTTTTGACATCTTTTATAGGAGCCGAGATAAATGAACTCAAAGTTGACAGTATTTTTTGAGTTTTATGCTCAAATTGAGCCCCTGCACTTTGAGATTAATTATCTCGCTTCCTTTAAGAGCAATCAAAAATTTGTAAACTAATAAAATATTGGTGATATTATAAAAAACATTTTGCCAGTTGACAATTTTTTGATATCTTGCACAGGAACCGAGATAAGTGAGCTTTCGAGCAACCATTTACGATAAGTTATCTTACCATTCTCACAAAATCA</canonical_amplicon>
		<polymorphic_amplicon>ATTATTCGTGAGATTCTGTATGCGCACTTCTAGCTCAATTATCTCGCTTCCTTTAAGAGCTATCAAGAATCTGTGAACTGGTAAAATTTTAGTGATATTATAATAAATATTTTCTCAATTAACAAACTTTTGGTATTTCTTATGAGAACCGAGATAATTGAGCTCAAAGTTGACGGTATGGGTGGGGTTGTGTTAAAGTGTTTACGGTTACAAACGCTGCACTAAAAACTCAATTATCTCGGTTCCTATGAGAGATACCAAAAATCTGTCAATTGATAAAACATTCATCATAATATCACCAATATTTTATTATTTGACACATTTTTAATATCTCTCMTAGGAACCGAGTTTACGGTATTTTTGGAGTATTTATGCTCAAATTGAGCCCCTGTACTTTGAGCTCAATTATCTCGCTTGCTATAAAAGGTAACAAATATTCGTCAATTGATAAATTACTTATCATATTATAACCAATATTTTTTCAATTGACAGATTTTTGACATCTTTTATAGGAGCCGAGATAAATGAACTCAAAGTTGACAGTATTTTTTGAGTTTTATGCTCAAATTGAGCCCCTGCACTTTGAGATTAATTATCTCGCTTCCTTTAAGAGCAATCAAAAATTTGTAAACTAATAAAATATTGGTGATATTATAAAAAACATTTTGCCAGTTGACAATTTTTTGATATCTTGCACAGGAACCGAGATAAGTGAGCTTTCGAGCAACCATTTACGATAAGTTATCTTACCATTCTCACAAAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24723</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>48193</contig_pos>
        <strand></strand>
        <context>TGAGCCCCTG[T/C]actttgagct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AACCGAGTTTACGGTATTTTTGGAGTATTTATGCTCAAATTGAGCCCCTG</left_flank>
        <right_flank>ACTTTGAGCTCAATTATCTCGCTTGCTATAAAAGGTAACAAATATTCGTC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCTTTTTGAATTGTAAGGAGAAGATCCAAAAATGCTTTTCTTTTCCTGCTATTCTCCTCATTCTCCTCTTTCAGCAACTCTTTTCGATCATGGATAACCTGAAAAATTATTCGTGAGATTCTGTATGCGCACTTCTAGCTCAATTATCTCGCTTCCTTTAAGAGCTATCAAGAATCTGTGAACTGGTAAAATTTTAGTGATATTATAATAAATATTTTCTCAATTAACAAACTTTTGGTATTTCTTATGAGAACCGAGATAATTGAGCTCAAAGTTGACGGTATGGGTGGGGTTGTGTTAAAGTGTTTACGGTTACAAACGCTGCACTAAAAACTCAATTATCTCGGTTCCTATGAGAGATACCAAAAATCTGTCAATTGATAAAACATTCATCATAATATCACCAATATTTTATTATTTGACACATTTTTAATATCTCTCCTAGGAACCGAGTTTACGGTATTTTTGGAGTATTTATGCTCAAATTGAGCCCCTGTACTTTGAGCTCAATTATCTCGCTTGCTATAAAAGGTAACAAATATTCGTCAATTGATAAATTACTTATCATATTATAACCAATATTTTTTCAATTGACAGATTTTTGACATCTTTTATAGGAGCCGAGATAAATGAACTCAAAGTTGACAGTATTTTTTGAGTTTTATGCTCAAATTGAGCCCCTGCACTTTGAGATTAATTATCTCGCTTCCTTTAAGAGCAATCAAAAATTTGTAAACTAATAAAATATTGGTGATATTATAAAAAACATTTTGCCAGTTGACAATTTTTTGATATCTTGCACAGGAACCGAGATAAGTGAGCTTTCGAGCAACCATTTACGATAAGTTATCTTACCATTCTCACAAAATCATTGGTCAATTTCACATTTCGATCAAACTCAAATCCAAGACCCGTCAAGTACCAAATTGGTTTCAACCAAAGCCATGGGAACTTCATATGATTCCAAGTGATCTCTGAGATTCTTTTCACTGCATGA</canonical>
            <polymorphic>TTTTCTTTTTGAATTGTAAGGAGAAGATCCAAAAATGCTTTTCTTTTCCTGCTATTCTCCTCATTCTCCTCTTTCAGCAACTCTTTTCGATCATGGATAACCTGAAAAATTATTCGTGAGATTCTGTATGCGCACTTCTAGCTCAATTATCTCGCTTCCTTTAAGAGCTATCAAGAATCTGTGAACTGGTAAAATTTTAGTGATATTATAATAAATATTTTCTCAATTAACAAACTTTTGGTATTTCTTATGAGAACCGAGATAATTGAGCTCAAAGTTGACGGTATGGGTGGGGTTGTGTTAAAGTGTTTACGGTTACAAACGCTGCACTAAAAACTCAATTATCTCGGTTCCTATGAGAGATACCAAAAATCTGTCAATTGATAAAACATTCATCATAATATCACCAATATTTTATTATTTGACACATTTTTAATATCTCTCCTAGGAACCGAGTTTACGGTATTTTTGGAGTATTTATGCTCAAATTGAGCCCCTGYACTTTGAGCTCAATTATCTCGCTTGCTATAAAAGGTAACAAATATTCGTCAATTGATAAATTACTTATCATATTATAACCAATATTTTTTCAATTGACAGATTTTTGACATCTTTTATAGGAGCCGAGATAAATGAACTCAAAGTTGACAGTATTTTTTGAGTTTTATGCTCAAATTGAGCCCCTGCACTTTGAGATTAATTATCTCGCTTCCTTTAAGAGCAATCAAAAATTTGTAAACTAATAAAATATTGGTGATATTATAAAAAACATTTTGCCAGTTGACAATTTTTTGATATCTTGCACAGGAACCGAGATAAGTGAGCTTTCGAGCAACCATTTACGATAAGTTATCTTACCATTCTCACAAAATCATTGGTCAATTTCACATTTCGATCAAACTCAAATCCAAGACCCGTCAAGTACCAAATTGGTTTCAACCAAAGCCATGGGAACTTCATATGATTCCAAGTGATCTCTGAGATTCTTTTCACTGCATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 423 77</canonical_bands>
                <polymorphic_bands>923 77</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTATTCGTGAGATTCTGTATGC</pcr_primer_p1>
		<pcr_primer_p2>TGATTTTGTGAGAATGGTAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>766</pcr_amplicon_size>
		<canonical_amplicon>ATTATTCGTGAGATTCTGTATGCGCACTTCTAGCTCAATTATCTCGCTTCCTTTAAGAGCTATCAAGAATCTGTGAACTGGTAAAATTTTAGTGATATTATAATAAATATTTTCTCAATTAACAAACTTTTGGTATTTCTTATGAGAACCGAGATAATTGAGCTCAAAGTTGACGGTATGGGTGGGGTTGTGTTAAAGTGTTTACGGTTACAAACGCTGCACTAAAAACTCAATTATCTCGGTTCCTATGAGAGATACCAAAAATCTGTCAATTGATAAAACATTCATCATAATATCACCAATATTTTATTATTTGACACATTTTTAATATCTCTCCTAGGAACCGAGTTTACGGTATTTTTGGAGTATTTATGCTCAAATTGAGCCCCTGTACTTTGAGCTCAATTATCTCGCTTGCTATAAAAGGTAACAAATATTCGTCAATTGATAAATTACTTATCATATTATAACCAATATTTTTTCAATTGACAGATTTTTGACATCTTTTATAGGAGCCGAGATAAATGAACTCAAAGTTGACAGTATTTTTTGAGTTTTATGCTCAAATTGAGCCCCTGCACTTTGAGATTAATTATCTCGCTTCCTTTAAGAGCAATCAAAAATTTGTAAACTAATAAAATATTGGTGATATTATAAAAAACATTTTGCCAGTTGACAATTTTTTGATATCTTGCACAGGAACCGAGATAAGTGAGCTTTCGAGCAACCATTTACGATAAGTTATCTTACCATTCTCACAAAATCA</canonical_amplicon>
		<polymorphic_amplicon>ATTATTCGTGAGATTCTGTATGCGCACTTCTAGCTCAATTATCTCGCTTCCTTTAAGAGCTATCAAGAATCTGTGAACTGGTAAAATTTTAGTGATATTATAATAAATATTTTCTCAATTAACAAACTTTTGGTATTTCTTATGAGAACCGAGATAATTGAGCTCAAAGTTGACGGTATGGGTGGGGTTGTGTTAAAGTGTTTACGGTTACAAACGCTGCACTAAAAACTCAATTATCTCGGTTCCTATGAGAGATACCAAAAATCTGTCAATTGATAAAACATTCATCATAATATCACCAATATTTTATTATTTGACACATTTTTAATATCTCTCCTAGGAACCGAGTTTACGGTATTTTTGGAGTATTTATGCTCAAATTGAGCCCCTGYACTTTGAGCTCAATTATCTCGCTTGCTATAAAAGGTAACAAATATTCGTCAATTGATAAATTACTTATCATATTATAACCAATATTTTTTCAATTGACAGATTTTTGACATCTTTTATAGGAGCCGAGATAAATGAACTCAAAGTTGACAGTATTTTTTGAGTTTTATGCTCAAATTGAGCCCCTGCACTTTGAGATTAATTATCTCGCTTCCTTTAAGAGCAATCAAAAATTTGTAAACTAATAAAATATTGGTGATATTATAAAAAACATTTTGCCAGTTGACAATTTTTTGATATCTTGCACAGGAACCGAGATAAGTGAGCTTTCGAGCAACCATTTACGATAAGTTATCTTACCATTCTCACAAAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24724</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>48282</contig_pos>
        <strand></strand>
        <context>ccaatatttt[T/A]tcaattgaca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CAAATATTCGTCAATTGATAAATTACTTATCATATTATAACCAATATTTT</left_flank>
        <right_flank>TCAATTGACAGATTTTTGACATCTTTTATAGGAGCCGAGATAAATGAACT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCATGGATAACCTGAAAAATTATTCGTGAGATTCTGTATGCGCACTTCTAGCTCAATTATCTCGCTTCCTTTAAGAGCTATCAAGAATCTGTGAACTGGTAAAATTTTAGTGATATTATAATAAATATTTTCTCAATTAACAAACTTTTGGTATTTCTTATGAGAACCGAGATAATTGAGCTCAAAGTTGACGGTATGGGTGGGGTTGTGTTAAAGTGTTTACGGTTACAAACGCTGCACTAAAAACTCAATTATCTCGGTTCCTATGAGAGATACCAAAAATCTGTCAATTGATAAAACATTCATCATAATATCACCAATATTTTATTATTTGACACATTTTTAATATCTCTCCTAGGAACCGAGTTTACGGTATTTTTGGAGTATTTATGCTCAAATTGAGCCCCTGTACTTTGAGCTCAATTATCTCGCTTGCTATAAAAGGTAACAAATATTCGTCAATTGATAAATTACTTATCATATTATAACCAATATTTTTTCAATTGACAGATTTTTGACATCTTTTATAGGAGCCGAGATAAATGAACTCAAAGTTGACAGTATTTTTTGAGTTTTATGCTCAAATTGAGCCCCTGCACTTTGAGATTAATTATCTCGCTTCCTTTAAGAGCAATCAAAAATTTGTAAACTAATAAAATATTGGTGATATTATAAAAAACATTTTGCCAGTTGACAATTTTTTGATATCTTGCACAGGAACCGAGATAAGTGAGCTTTCGAGCAACCATTTACGATAAGTTATCTTACCATTCTCACAAAATCATTGGTCAATTTCACATTTCGATCAAACTCAAATCCAAGACCCGTCAAGTACCAAATTGGTTTCAACCAAAGCCATGGGAACTTCATATGATTCCAAGTGATCTCTGAGATTCTTTTCACTGCATGAACATATTCGTTATTCTGGCCGAGTTGGGCGTTCACTTGAATTCCCATAGCAGTTTCTAGAAGCACATTTTTCAAAATCCCGCAAAAATT</canonical>
            <polymorphic>ATCATGGATAACCTGAAAAATTATTCGTGAGATTCTGTATGCGCACTTCTAGCTCAATTATCTCGCTTCCTTTAAGAGCTATCAAGAATCTGTGAACTGGTAAAATTTTAGTGATATTATAATAAATATTTTCTCAATTAACAAACTTTTGGTATTTCTTATGAGAACCGAGATAATTGAGCTCAAAGTTGACGGTATGGGTGGGGTTGTGTTAAAGTGTTTACGGTTACAAACGCTGCACTAAAAACTCAATTATCTCGGTTCCTATGAGAGATACCAAAAATCTGTCAATTGATAAAACATTCATCATAATATCACCAATATTTTATTATTTGACACATTTTTAATATCTCTCCTAGGAACCGAGTTTACGGTATTTTTGGAGTATTTATGCTCAAATTGAGCCCCTGTACTTTGAGCTCAATTATCTCGCTTGCTATAAAAGGTAACAAATATTCGTCAATTGATAAATTACTTATCATATTATAACCAATATTTTWTCAATTGACAGATTTTTGACATCTTTTATAGGAGCCGAGATAAATGAACTCAAAGTTGACAGTATTTTTTGAGTTTTATGCTCAAATTGAGCCCCTGCACTTTGAGATTAATTATCTCGCTTCCTTTAAGAGCAATCAAAAATTTGTAAACTAATAAAATATTGGTGATATTATAAAAAACATTTTGCCAGTTGACAATTTTTTGATATCTTGCACAGGAACCGAGATAAGTGAGCTTTCGAGCAACCATTTACGATAAGTTATCTTACCATTCTCACAAAATCATTGGTCAATTTCACATTTCGATCAAACTCAAATCCAAGACCCGTCAAGTACCAAATTGGTTTCAACCAAAGCCATGGGAACTTCATATGATTCCAAGTGATCTCTGAGATTCTTTTCACTGCATGAACATATTCGTTATTCTGGCCGAGTTGGGCGTTCACTTGAATTCCCATAGCAGTTTCTAGAAGCACATTTTTCAAAATCCCGCAAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTATTCGTGAGATTCTGTATGC</pcr_primer_p1>
		<pcr_primer_p2>TGATTTTGTGAGAATGGTAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>766</pcr_amplicon_size>
		<canonical_amplicon>ATTATTCGTGAGATTCTGTATGCGCACTTCTAGCTCAATTATCTCGCTTCCTTTAAGAGCTATCAAGAATCTGTGAACTGGTAAAATTTTAGTGATATTATAATAAATATTTTCTCAATTAACAAACTTTTGGTATTTCTTATGAGAACCGAGATAATTGAGCTCAAAGTTGACGGTATGGGTGGGGTTGTGTTAAAGTGTTTACGGTTACAAACGCTGCACTAAAAACTCAATTATCTCGGTTCCTATGAGAGATACCAAAAATCTGTCAATTGATAAAACATTCATCATAATATCACCAATATTTTATTATTTGACACATTTTTAATATCTCTCCTAGGAACCGAGTTTACGGTATTTTTGGAGTATTTATGCTCAAATTGAGCCCCTGTACTTTGAGCTCAATTATCTCGCTTGCTATAAAAGGTAACAAATATTCGTCAATTGATAAATTACTTATCATATTATAACCAATATTTTTTCAATTGACAGATTTTTGACATCTTTTATAGGAGCCGAGATAAATGAACTCAAAGTTGACAGTATTTTTTGAGTTTTATGCTCAAATTGAGCCCCTGCACTTTGAGATTAATTATCTCGCTTCCTTTAAGAGCAATCAAAAATTTGTAAACTAATAAAATATTGGTGATATTATAAAAAACATTTTGCCAGTTGACAATTTTTTGATATCTTGCACAGGAACCGAGATAAGTGAGCTTTCGAGCAACCATTTACGATAAGTTATCTTACCATTCTCACAAAATCA</canonical_amplicon>
		<polymorphic_amplicon>ATTATTCGTGAGATTCTGTATGCGCACTTCTAGCTCAATTATCTCGCTTCCTTTAAGAGCTATCAAGAATCTGTGAACTGGTAAAATTTTAGTGATATTATAATAAATATTTTCTCAATTAACAAACTTTTGGTATTTCTTATGAGAACCGAGATAATTGAGCTCAAAGTTGACGGTATGGGTGGGGTTGTGTTAAAGTGTTTACGGTTACAAACGCTGCACTAAAAACTCAATTATCTCGGTTCCTATGAGAGATACCAAAAATCTGTCAATTGATAAAACATTCATCATAATATCACCAATATTTTATTATTTGACACATTTTTAATATCTCTCCTAGGAACCGAGTTTACGGTATTTTTGGAGTATTTATGCTCAAATTGAGCCCCTGTACTTTGAGCTCAATTATCTCGCTTGCTATAAAAGGTAACAAATATTCGTCAATTGATAAATTACTTATCATATTATAACCAATATTTTWTCAATTGACAGATTTTTGACATCTTTTATAGGAGCCGAGATAAATGAACTCAAAGTTGACAGTATTTTTTGAGTTTTATGCTCAAATTGAGCCCCTGCACTTTGAGATTAATTATCTCGCTTCCTTTAAGAGCAATCAAAAATTTGTAAACTAATAAAATATTGGTGATATTATAAAAAACATTTTGCCAGTTGACAATTTTTTGATATCTTGCACAGGAACCGAGATAAGTGAGCTTTCGAGCAACCATTTACGATAAGTTATCTTACCATTCTCACAAAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24725</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>48326</contig_pos>
        <strand></strand>
        <context>gccgagataa[A/G]tgaactcaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTTTTTCAATTGACAGATTTTTGACATCTTTTATAGGAGCCGAGATAA</left_flank>
        <right_flank>TGAACTCAAAGTTGACAGTATTTTTTGAGTTTTATGCTCAAATTGAGCCC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTCTAGCTCAATTATCTCGCTTCCTTTAAGAGCTATCAAGAATCTGTGAACTGGTAAAATTTTAGTGATATTATAATAAATATTTTCTCAATTAACAAACTTTTGGTATTTCTTATGAGAACCGAGATAATTGAGCTCAAAGTTGACGGTATGGGTGGGGTTGTGTTAAAGTGTTTACGGTTACAAACGCTGCACTAAAAACTCAATTATCTCGGTTCCTATGAGAGATACCAAAAATCTGTCAATTGATAAAACATTCATCATAATATCACCAATATTTTATTATTTGACACATTTTTAATATCTCTCCTAGGAACCGAGTTTACGGTATTTTTGGAGTATTTATGCTCAAATTGAGCCCCTGTACTTTGAGCTCAATTATCTCGCTTGCTATAAAAGGTAACAAATATTCGTCAATTGATAAATTACTTATCATATTATAACCAATATTTTTTCAATTGACAGATTTTTGACATCTTTTATAGGAGCCGAGATAAATGAACTCAAAGTTGACAGTATTTTTTGAGTTTTATGCTCAAATTGAGCCCCTGCACTTTGAGATTAATTATCTCGCTTCCTTTAAGAGCAATCAAAAATTTGTAAACTAATAAAATATTGGTGATATTATAAAAAACATTTTGCCAGTTGACAATTTTTTGATATCTTGCACAGGAACCGAGATAAGTGAGCTTTCGAGCAACCATTTACGATAAGTTATCTTACCATTCTCACAAAATCATTGGTCAATTTCACATTTCGATCAAACTCAAATCCAAGACCCGTCAAGTACCAAATTGGTTTCAACCAAAGCCATGGGAACTTCATATGATTCCAAGTGATCTCTGAGATTCTTTTCACTGCATGAACATATTCGTTATTCTGGCCGAGTTGGGCGTTCACTTGAATTCCCATAGCAGTTTCTAGAAGCACATTTTTCAAAATCCCGCAAAAATTATTAAATCTCACCACAAATAATATCCAGTGTACATCTCTTGAAA</canonical>
            <polymorphic>ACTTCTAGCTCAATTATCTCGCTTCCTTTAAGAGCTATCAAGAATCTGTGAACTGGTAAAATTTTAGTGATATTATAATAAATATTTTCTCAATTAACAAACTTTTGGTATTTCTTATGAGAACCGAGATAATTGAGCTCAAAGTTGACGGTATGGGTGGGGTTGTGTTAAAGTGTTTACGGTTACAAACGCTGCACTAAAAACTCAATTATCTCGGTTCCTATGAGAGATACCAAAAATCTGTCAATTGATAAAACATTCATCATAATATCACCAATATTTTATTATTTGACACATTTTTAATATCTCTCCTAGGAACCGAGTTTACGGTATTTTTGGAGTATTTATGCTCAAATTGAGCCCCTGTACTTTGAGCTCAATTATCTCGCTTGCTATAAAAGGTAACAAATATTCGTCAATTGATAAATTACTTATCATATTATAACCAATATTTTTTCAATTGACAGATTTTTGACATCTTTTATAGGAGCCGAGATAARTGAACTCAAAGTTGACAGTATTTTTTGAGTTTTATGCTCAAATTGAGCCCCTGCACTTTGAGATTAATTATCTCGCTTCCTTTAAGAGCAATCAAAAATTTGTAAACTAATAAAATATTGGTGATATTATAAAAAACATTTTGCCAGTTGACAATTTTTTGATATCTTGCACAGGAACCGAGATAAGTGAGCTTTCGAGCAACCATTTACGATAAGTTATCTTACCATTCTCACAAAATCATTGGTCAATTTCACATTTCGATCAAACTCAAATCCAAGACCCGTCAAGTACCAAATTGGTTTCAACCAAAGCCATGGGAACTTCATATGATTCCAAGTGATCTCTGAGATTCTTTTCACTGCATGAACATATTCGTTATTCTGGCCGAGTTGGGCGTTCACTTGAATTCCCATAGCAGTTTCTAGAAGCACATTTTTCAAAATCCCGCAAAAATTATTAAATCTCACCACAAATAATATCCAGTGTACATCTCTTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTATTCGTGAGATTCTGTATGC</pcr_primer_p1>
		<pcr_primer_p2>TGATTTTGTGAGAATGGTAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>766</pcr_amplicon_size>
		<canonical_amplicon>AATGAACTCAAAGTTGACAGTATTTTTTGAGTTTTATGCTCAAATTGAGCCCCTGCACTTTGAGATTAATTATCTCGCTTCCTTTAAGAGCAATCAAAAATTTGTAAACTAATAAAATATTGGTGATATTATAAAAAACATTTTGCCAGTTGACAATTTTTTGATATCTTGCACAGGAACCGAGATAAGTGAGCTTTCGAGCAACCATTTACGATAAGTTATCTTACCATTCTCACAAAATCA</canonical_amplicon>
		<polymorphic_amplicon>ARTGAACTCAAAGTTGACAGTATTTTTTGAGTTTTATGCTCAAATTGAGCCCCTGCACTTTGAGATTAATTATCTCGCTTCCTTTAAGAGCAATCAAAAATTTGTAAACTAATAAAATATTGGTGATATTATAAAAAACATTTTGCCAGTTGACAATTTTTTGATATCTTGCACAGGAACCGAGATAAGTGAGCTTTCGAGCAACCATTTACGATAAGTTATCTTACCATTCTCACAAAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24726</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>48391</contig_pos>
        <strand></strand>
        <context>actttgagat[T/C]aattatctcg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACAGTATTTTTTGAGTTTTATGCTCAAATTGAGCCCCTGCACTTTGAGAT</left_flank>
        <right_flank>AATTATCTCGCTTCCTTTAAGAGCAATCAAAAATTTGTAAACTAATAAAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTGATATTATAATAAATATTTTCTCAATTAACAAACTTTTGGTATTTCTTATGAGAACCGAGATAATTGAGCTCAAAGTTGACGGTATGGGTGGGGTTGTGTTAAAGTGTTTACGGTTACAAACGCTGCACTAAAAACTCAATTATCTCGGTTCCTATGAGAGATACCAAAAATCTGTCAATTGATAAAACATTCATCATAATATCACCAATATTTTATTATTTGACACATTTTTAATATCTCTCCTAGGAACCGAGTTTACGGTATTTTTGGAGTATTTATGCTCAAATTGAGCCCCTGTACTTTGAGCTCAATTATCTCGCTTGCTATAAAAGGTAACAAATATTCGTCAATTGATAAATTACTTATCATATTATAACCAATATTTTTTCAATTGACAGATTTTTGACATCTTTTATAGGAGCCGAGATAAATGAACTCAAAGTTGACAGTATTTTTTGAGTTTTATGCTCAAATTGAGCCCCTGCACTTTGAGATTAATTATCTCGCTTCCTTTAAGAGCAATCAAAAATTTGTAAACTAATAAAATATTGGTGATATTATAAAAAACATTTTGCCAGTTGACAATTTTTTGATATCTTGCACAGGAACCGAGATAAGTGAGCTTTCGAGCAACCATTTACGATAAGTTATCTTACCATTCTCACAAAATCATTGGTCAATTTCACATTTCGATCAAACTCAAATCCAAGACCCGTCAAGTACCAAATTGGTTTCAACCAAAGCCATGGGAACTTCATATGATTCCAAGTGATCTCTGAGATTCTTTTCACTGCATGAACATATTCGTTATTCTGGCCGAGTTGGGCGTTCACTTGAATTCCCATAGCAGTTTCTAGAAGCACATTTTTCAAAATCCCGCAAAAATTATTAAATCTCACCACAAATAATATCCAGTGTACATCTCTTGAAATACGGGAAACCATCAAAGAAATCGCCATCCACATGTGGCTCCACTGCCTCGACAAGAACTTCTGC</canonical>
            <polymorphic>AGTGATATTATAATAAATATTTTCTCAATTAACAAACTTTTGGTATTTCTTATGAGAACCGAGATAATTGAGCTCAAAGTTGACGGTATGGGTGGGGTTGTGTTAAAGTGTTTACGGTTACAAACGCTGCACTAAAAACTCAATTATCTCGGTTCCTATGAGAGATACCAAAAATCTGTCAATTGATAAAACATTCATCATAATATCACCAATATTTTATTATTTGACACATTTTTAATATCTCTCCTAGGAACCGAGTTTACGGTATTTTTGGAGTATTTATGCTCAAATTGAGCCCCTGTACTTTGAGCTCAATTATCTCGCTTGCTATAAAAGGTAACAAATATTCGTCAATTGATAAATTACTTATCATATTATAACCAATATTTTTTCAATTGACAGATTTTTGACATCTTTTATAGGAGCCGAGATAAATGAACTCAAAGTTGACAGTATTTTTTGAGTTTTATGCTCAAATTGAGCCCCTGCACTTTGAGATYAATTATCTCGCTTCCTTTAAGAGCAATCAAAAATTTGTAAACTAATAAAATATTGGTGATATTATAAAAAACATTTTGCCAGTTGACAATTTTTTGATATCTTGCACAGGAACCGAGATAAGTGAGCTTTCGAGCAACCATTTACGATAAGTTATCTTACCATTCTCACAAAATCATTGGTCAATTTCACATTTCGATCAAACTCAAATCCAAGACCCGTCAAGTACCAAATTGGTTTCAACCAAAGCCATGGGAACTTCATATGATTCCAAGTGATCTCTGAGATTCTTTTCACTGCATGAACATATTCGTTATTCTGGCCGAGTTGGGCGTTCACTTGAATTCCCATAGCAGTTTCTAGAAGCACATTTTTCAAAATCCCGCAAAAATTATTAAATCTCACCACAAATAATATCCAGTGTACATCTCTTGAAATACGGGAAACCATCAAAGAAATCGCCATCCACATGTGGCTCCACTGCCTCGACAAGAACTTCTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>376 264 132 107 74 29 18</canonical_bands>
                <polymorphic_bands>376 282 132 107 74 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTATTCGTGAGATTCTGTATGC</pcr_primer_p1>
		<pcr_primer_p2>TGATTTTGTGAGAATGGTAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>766</pcr_amplicon_size>
		<canonical_amplicon>TTAATTATCTCGCTTCCTTTAAGAGCAATCAAAAATTTGTAAACTAATAAAATATTGGTGATATTATAAAAAACATTTTGCCAGTTGACAATTTTTTGATATCTTGCACAGGAACCGAGATAAGTGAGCTTTCGAGCAACCATTTACGATAAGTTATCTTACCATTCTCACAAAATCA</canonical_amplicon>
		<polymorphic_amplicon>TYAATTATCTCGCTTCCTTTAAGAGCAATCAAAAATTTGTAAACTAATAAAATATTGGTGATATTATAAAAAACATTTTGCCAGTTGACAATTTTTTGATATCTTGCACAGGAACCGAGATAAGTGAGCTTTCGAGCAACCATTTACGATAAGTTATCTTACCATTCTCACAAAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24727</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>73397</contig_pos>
        <strand>+</strand>
        <context>GAAGAAAAAG[A/G]TGCGGAACGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATACATCGGAAGCATTGGAAAAAAATTGTACAAAATGGGAAGAAAAAG</left_flank>
        <right_flank>TGCGGAACGACGACGGGGAAACCCGAGAGGAAGCGGCGAAAAATCAGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAACAGAAAGTTCGATGATAAGCAGTGAAAATGAATAAAAATTGATTAAGGTAACTGTAGTTTTCGTTGTGGGACCGTAGGGCGTTTTCCTTCCATAACCTGCGAATTTTAAACTTAAAAATTGTTCGCATGACATAATTAAATTTTCTATTTTAACGATTTTTAAGATTTCTTCGAAAAATGAGTTTCTTCGAATTCCGCCTATTACAGTTCTTCCTATGACATAATTTTACTTTTTCAAACTTTTGTTTATTTTTTACACGACCCACTTCTCCTCTGTCCTGCACCAAGTTCAACTCGATTAAATGGAAGTTTCTAGAGAAAGATAGAACAGCAACATTAAAAAAATACTGATGGGGAATTATTATTTATATTATTGTTATGCTGAAAAATGAGTGGCGACTGGAAAGAGAAAAACAGTAGTAGGAAAGCAGAGAGAAAAATAAGACATACATCGGAAGCATTGGAAAAAAATTGTACAAAATGGGAAGAAAAAGATGCGGAACGACGACGGGGAAACCCGAGAGGAAGCGGCGAAAAATCAGAAGCAAGAAAAATTCAGAATTTATTATGTTATCACTTGAGCAGGAATCTTTCCGTGAACGTCGTCCTTCGCTGGGTTTCCCTCTAGTGGATCGGGCACGCCGGCGTCCTCCTTCAGCTGATCGATCAGCTCGCGTGCCGGTTTGAACACTTTGCCAGGCCGGAATGTCAGTTTTCGGGAGATGAGACCCATCTGAAAAAAAGATAAATTTGAATTTCAGGCATCTCGAAAGATCTTTTTTATCGCAAAATTTGCTACCGCTTCCGACCGCTACGCCGACACGCGACGCGTTCAAACTAGGCTTGATGGCAAGCTGCATCTGCCAACTTACATCACTGATCGGATAGATGATATGCATGTGAAGGTGATGAACGGAGAGCAGTGGTGGCAGGTGGAATCCGATGCGAAGCATGTCTTCGACAGTGTCCGCCTCGCCCTCCTTCTTCAGCTGCTC</canonical>
            <polymorphic>AATAACAGAAAGTTCGATGATAAGCAGTGAAAATGAATAAAAATTGATTAAGGTAACTGTAGTTTTCGTTGTGGGACCGTAGGGCGTTTTCCTTCCATAACCTGCGAATTTTAAACTTAAAAATTGTTCGCATGACATAATTAAATTTTCTATTTTAACGATTTTTAAGATTTCTTCGAAAAATGAGTTTCTTCGAATTCCGCCTATTACAGTTCTTCCTATGACATAATTTTACTTTTTCAAACTTTTGTTTATTTTTTACACGACCCACTTCTCCTCTGTCCTGCACCAAGTTCAACTCGATTAAATGGAAGTTTCTAGAGAAAGATAGAACAGCAACATTAAAAAAATACTGATGGGGAATTATTATTTATATTATTGTTATGCTGAAAAATGAGTGGCGACTGGAAAGAGAAAAACAGTAGTAGGAAAGCAGAGAGAAAAATAAGACATACATCGGAAGCATTGGAAAAAAATTGTACAAAATGGGAAGAAAAAGRTGCGGAACGACGACGGGGAAACCCGAGAGGAAGCGGCGAAAAATCAGAAGCAAGAAAAATTCAGAATTTATTATGTTATCACTTGAGCAGGAATCTTTCCGTGAACGTCGTCCTTCGCTGGGTTTCCCTCTAGTGGATCGGGCACGCCGGCGTCCTCCTTCAGCTGATCGATCAGCTCGCGTGCCGGTTTGAACACTTTGCCAGGCCGGAATGTCAGTTTTCGGGAGATGAGACCCATCTGAAAAAAAGATAAATTTGAATTTCAGGCATCTCGAAAGATCTTTTTTATCGCAAAATTTGCTACCGCTTCCGACCGCTACGCCGACACGCGACGCGTTCAAACTAGGCTTGATGGCAAGCTGCATCTGCCAACTTACATCACTGATCGGATAGATGATATGCATGTGAAGGTGATGAACGGAGAGCAGTGGTGGCAGGTGGAATCCGATGCGAAGCATGTCTTCGACAGTGTCCGCCTCGCCCTCCTTCTTCAGCTGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATACTGATGGGGAATTATTA</pcr_primer_p1>
		<pcr_primer_p2>ATTCCTGCTCAAGTGATAACATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAATACTGATGGGGAATTATTATTTATATTATTGTTATGCTGAAAAATGAGTGGCGACTGGAAAGAGAAAAACAGTAGTAGGAAAGCAGAGAGAAAAATAAGACATACATCGGAAGCATTGGAAAAAAATTGTACAAAATGGGAAGAAAAAGATGCGGAACGACGACGGGGAAACCCGAGAGGAAGCGGCGAAAAATCAGAAGCAAGAAAAATTCAGAATTTATTATGTTATCACTTGAGCAGGAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATACTGATGGGGAATTATTATTTATATTATTGTTATGCTGAAAAATGAGTGGCGACTGGAAAGAGAAAAACAGTAGTAGGAAAGCAGAGAGAAAAATAAGACATACATCGGAAGCATTGGAAAAAAATTGTACAAAATGGGAAGAAAAAGRTGCGGAACGACGACGGGGAAACCCGAGAGGAAGCGGCGAAAAATCAGAAGCAAGAAAAATTCAGAATTTATTATGTTATCACTTGAGCAGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24728</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>76054</contig_pos>
        <strand>+</strand>
        <context>CCCAACTTGT[G/T]KGCGTTTATA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCAGTTTTTAAAGTCAGATGGGTACTCTGTGTTGTTGTGGCCCAACTTGT</left_flank>
        <right_flank>TGCGTTTATATTCTTGTCACGTTTGGAACCTAAAATAGAGTTGGGAAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGGGCAAAGTTCGTTCTTTTCGGAAATACCTGTCATTTAGACAACAGGACACACTGGTTTAAATTTGAAATTTTCAATTGTTCATTTAGAATTCTAGAATTTTTCGGGTCTAAAAAGTAGTTGAGGAAAAAAAAGAAAAATTTTCTGGGGGATGAAAACGGACGGAGATTAAAATGGAGACGAAAAAAGGAGGGGAGAGTAGTAAACAGGAGAGAGGCGCAGCGTCCAAATAGAAATGAGAAGAACGGGTGCGAGAAGGAGAGAGAGAGAGAGAGAGAAAAGAAGGACAAAACAATTTGTGATGAGATAGAAACACACTGCAGACAAAACAACGACTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATGTGACACATATGATGATTGTGATGCATGGTCTCTTATCCGAGAGACCATGATAGGGAGCAGTTTTTAAAGTCAGATGGGTACTCTGTGTTGTTGTGGCCCAACTTGTTTGCGTTTATATTCTTGTCACGTTTGGAACCTAAAATAGAGTTGGGAAAGAAGGAATTTCGGGAAAATGTGAAGTCTCAATTTTCAGGTATTGAAAGTTTTTTTTTAAATACAGGTTCAAACATGGACAATCACTGGATATCCACAAAATAACAATGAATGATGCCACCTGAAAATCCAGAATGCATACCGTAACTTTGAGTCAATTTTTCTCGATTCCTAGAAAAGATATCAAAAAGTGATCAACTGATAAAATTTTGGTGATATTATGATAAACATTTTATCAGTTGAAAGATTTTTGATATCACTTACAGGGAGTGAGATTATTGAGCTCGAAGTGCACGCATAGAGCGCCACACAATACTGCACTCTGAGATCAATTACCTCGGTTCCTATAAGAGCTATCAAAGTTTTGTCAACTAATGAAATGTTGCTGATAATATGATAAGCATTTTATCAGTTGACAAAATTTAGATATTTCTATTAAGAGCCGAGGCTCAAA</canonical>
            <polymorphic>TTTCGGGCAAAGTTCGTTCTTTTCGGAAATACCTGTCATTTAGACAACAGGACACACTGGTTTAAATTTGAAATTTTCAATTGTTCATTTAGAATTCTAGAATTTTTCGGGTCTAAAAAGTAGTTGAGGAAAAAAAAGAAAAATTTTCTGGGGGATGAAAACGGACGGAGATTAAAATGGAGACGAAAAAAGGAGGGGAGAGTAGTAAACAGGAGAGAGGCGCAGCGTCCAAATAGAAATGAGAAGAACGGGTGCGAGAAGGAGAGAGAGAGAGAGAGAGAAAAGAAGGACAAAACAATTTGTGATGAGATAGAAACACACTGCAGACAAAACAACGACTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATGTGACACATATGATGATTGTGATGCATGGTCTCTTATCCGAGAGACCATGATAGGGAGCAGTTTTTAAAGTCAGATGGGTACTCTGTGTTGTTGTGGCCCAACTTGTKTGCGTTTATATTCTTGTCACGTTTGGAACCTAAAATAGAGTTGGGAAAGAAGGAATTTCGGGAAAATGTGAAGTCTCAATTTTCAGGTATTGAAAGTTTTTTTTTAAATACAGGTTCAAACATGGACAATCACTGGATATCCACAAAATAACAATGAATGATGCCACCTGAAAATCCAGAATGCATACCGTAACTTTGAGTCAATTTTTCTCGATTCCTAGAAAAGATATCAAAAAGTGATCAACTGATAAAATTTTGGTGATATTATGATAAACATTTTATCAGTTGAAAGATTTTTGATATCACTTACAGGGAGTGAGATTATTGAGCTCGAAGTGCACGCATAGAGCGCCACACAATACTGCACTCTGAGATCAATTACCTCGGTTCCTATAAGAGCTATCAAAGTTTTGTCAACTAATGAAATGTTGCTGATAATATGATAAGCATTTTATCAGTTGACAAAATTTAGATATTTCTATTAAGAGCCGAGGCTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATAGAAACACACTGCAGACA</pcr_primer_p1>
		<pcr_primer_p2>ATTCCTTCTTTCCCAACTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGATAGAAACACACTGCAGACAAAACAACGACTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATGTGACACATATGATGATTGTGATGCATGGTCTCTTATCCGAGAGACCATGATAGGGAGCAGTTTTTAAAGTCAGATGGGTACTCTGTGTTGTTGTGGCCCAACTTGTTTGCGTTTATATTCTTGTCACGTTTGGAACCTAAAATAGAGTTGGGAAAGAAGGAAT</canonical_amplicon>
		<polymorphic_amplicon>AGATAGAAACACACTGCAGACAAAACAACGACTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATGTGACACATATGATGATTGTGATGCATGGTCTCTTATCCGAGAGACCATGATAGGGAGCAGTTTTTAAAGTCAGATGGGTACTCTGTGTTGTTGTGGCCCAACTTGTKTGCGTTTATATTCTTGTCACGTTTGGAACCTAAAATAGAGTTGGGAAAGAAGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24729</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>76055</contig_pos>
        <strand>+</strand>
        <context>CCAACTTGTK[G/T]GCGTTTATAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAGTTTTTAAAGTCAGATGGGTACTCTGTGTTGTTGTGGCCCAACTTGTT</left_flank>
        <right_flank>GCGTTTATATTCTTGTCACGTTTGGAACCTAAAATAGAGTTGGGAAAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGGGCAAAGTTCGTTCTTTTCGGAAATACCTGTCATTTAGACAACAGGACACACTGGTTTAAATTTGAAATTTTCAATTGTTCATTTAGAATTCTAGAATTTTTCGGGTCTAAAAAGTAGTTGAGGAAAAAAAAGAAAAATTTTCTGGGGGATGAAAACGGACGGAGATTAAAATGGAGACGAAAAAAGGAGGGGAGAGTAGTAAACAGGAGAGAGGCGCAGCGTCCAAATAGAAATGAGAAGAACGGGTGCGAGAAGGAGAGAGAGAGAGAGAGAGAAAAGAAGGACAAAACAATTTGTGATGAGATAGAAACACACTGCAGACAAAACAACGACTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATGTGACACATATGATGATTGTGATGCATGGTCTCTTATCCGAGAGACCATGATAGGGAGCAGTTTTTAAAGTCAGATGGGTACTCTGTGTTGTTGTGGCCCAACTTGTTTGCGTTTATATTCTTGTCACGTTTGGAACCTAAAATAGAGTTGGGAAAGAAGGAATTTCGGGAAAATGTGAAGTCTCAATTTTCAGGTATTGAAAGTTTTTTTTTAAATACAGGTTCAAACATGGACAATCACTGGATATCCACAAAATAACAATGAATGATGCCACCTGAAAATCCAGAATGCATACCGTAACTTTGAGTCAATTTTTCTCGATTCCTAGAAAAGATATCAAAAAGTGATCAACTGATAAAATTTTGGTGATATTATGATAAACATTTTATCAGTTGAAAGATTTTTGATATCACTTACAGGGAGTGAGATTATTGAGCTCGAAGTGCACGCATAGAGCGCCACACAATACTGCACTCTGAGATCAATTACCTCGGTTCCTATAAGAGCTATCAAAGTTTTGTCAACTAATGAAATGTTGCTGATAATATGATAAGCATTTTATCAGTTGACAAAATTTAGATATTTCTATTAAGAGCCGAGGCTCAAAG</canonical>
            <polymorphic>TTCGGGCAAAGTTCGTTCTTTTCGGAAATACCTGTCATTTAGACAACAGGACACACTGGTTTAAATTTGAAATTTTCAATTGTTCATTTAGAATTCTAGAATTTTTCGGGTCTAAAAAGTAGTTGAGGAAAAAAAAGAAAAATTTTCTGGGGGATGAAAACGGACGGAGATTAAAATGGAGACGAAAAAAGGAGGGGAGAGTAGTAAACAGGAGAGAGGCGCAGCGTCCAAATAGAAATGAGAAGAACGGGTGCGAGAAGGAGAGAGAGAGAGAGAGAGAAAAGAAGGACAAAACAATTTGTGATGAGATAGAAACACACTGCAGACAAAACAACGACTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATGTGACACATATGATGATTGTGATGCATGGTCTCTTATCCGAGAGACCATGATAGGGAGCAGTTTTTAAAGTCAGATGGGTACTCTGTGTTGTTGTGGCCCAACTTGTTKGCGTTTATATTCTTGTCACGTTTGGAACCTAAAATAGAGTTGGGAAAGAAGGAATTTCGGGAAAATGTGAAGTCTCAATTTTCAGGTATTGAAAGTTTTTTTTTAAATACAGGTTCAAACATGGACAATCACTGGATATCCACAAAATAACAATGAATGATGCCACCTGAAAATCCAGAATGCATACCGTAACTTTGAGTCAATTTTTCTCGATTCCTAGAAAAGATATCAAAAAGTGATCAACTGATAAAATTTTGGTGATATTATGATAAACATTTTATCAGTTGAAAGATTTTTGATATCACTTACAGGGAGTGAGATTATTGAGCTCGAAGTGCACGCATAGAGCGCCACACAATACTGCACTCTGAGATCAATTACCTCGGTTCCTATAAGAGCTATCAAAGTTTTGTCAACTAATGAAATGTTGCTGATAATATGATAAGCATTTTATCAGTTGACAAAATTTAGATATTTCTATTAAGAGCCGAGGCTCAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATAGAAACACACTGCAGACA</pcr_primer_p1>
		<pcr_primer_p2>ATTCCTTCTTTCCCAACTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGATAGAAACACACTGCAGACAAAACAACGACTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATGTGACACATATGATGATTGTGATGCATGGTCTCTTATCCGAGAGACCATGATAGGGAGCAGTTTTTAAAGTCAGATGGGTACTCTGTGTTGTTGTGGCCCAACTTGTTTGCGTTTATATTCTTGTCACGTTTGGAACCTAAAATAGAGTTGGGAAAGAAGGAAT</canonical_amplicon>
		<polymorphic_amplicon>AGATAGAAACACACTGCAGACAAAACAACGACTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATGTGACACATATGATGATTGTGATGCATGGTCTCTTATCCGAGAGACCATGATAGGGAGCAGTTTTTAAAGTCAGATGGGTACTCTGTGTTGTTGTGGCCCAACTTGTTKGCGTTTATATTCTTGTCACGTTTGGAACCTAAAATAGAGTTGGGAAAGAAGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24730</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>98150</contig_pos>
        <strand>+</strand>
        <context>TGTGCAAACA[G/T]TTTTGGCTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACA</left_flank>
        <right_flank>TTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAAT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAAGATATCAAAAACCTGTCAACTGATGAAATTTGTGTGATATTATGATAAATATTTTATCAGTTGACACATTTTTGATATCTCTCACAAGAAATGAGAAAAATGGGGATAAAATTGACGGTTTAGGTGGGCTTCTATTAAGGGACAGTTACCTAGAAGATGGCTGAAAGGAAAGGGTTTTGCTTTTGTAAAAAAAAAACAAAAATTATGCTAAACAGAATCACAAAGTCATGACTCTTATAACTTAATCAATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATA</canonical>
            <polymorphic>TAAAAGATATCAAAAACCTGTCAACTGATGAAATTTGTGTGATATTATGATAAATATTTTATCAGTTGACACATTTTTGATATCTCTCACAAGAAATGAGAAAAATGGGGATAAAATTGACGGTTTAGGTGGGCTTCTATTAAGGGACAGTTACCTAGAAGATGGCTGAAAGGAAAGGGTTTTGCTTTTGTAAAAAAAAAACAAAAATTATGCTAAACAGAATCACAAAGTCATGACTCTTATAACTTAATCAATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAKTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 350 122 27</canonical_bands>
                <polymorphic_bands>851 122 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCAGAAAAATATTAGTGTGTGT</pcr_primer_p1>
		<pcr_primer_p2>TCCTTCTTCTATTATCCAAAACA</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>GCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGA</canonical_amplicon>
		<polymorphic_amplicon>GCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAKTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24731</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>98230</contig_pos>
        <strand>+</strand>
        <context>GAAGAAGGAG[A/G]CACATCTAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAG</left_flank>
        <right_flank>CACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCTCTCACAAGAAATGAGAAAAATGGGGATAAAATTGACGGTTTAGGTGGGCTTCTATTAAGGGACAGTTACCTAGAAGATGGCTGAAAGGAAAGGGTTTTGCTTTTGTAAAAAAAAAACAAAAATTATGCTAAACAGAATCACAAAGTCATGACTCTTATAACTTAATCAATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGC</canonical>
            <polymorphic>TATCTCTCACAAGAAATGAGAAAAATGGGGATAAAATTGACGGTTTAGGTGGGCTTCTATTAAGGGACAGTTACCTAGAAGATGGCTGAAAGGAAAGGGTTTTGCTTTTGTAAAAAAAAAACAAAAATTATGCTAAACAGAATCACAAAGTCATGACTCTTATAACTTAATCAATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGRCACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTCTCTGGAAAATAAGACT</pcr_primer_p1>
		<pcr_primer_p2>AAACAAAATCCTGCATACCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>374</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGRCACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24732</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>98281</contig_pos>
        <strand>+</strand>
        <context>AAAATTATGA[A/C]AATTGAAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGA</left_flank>
        <right_flank>AATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCTTCTATTAAGGGACAGTTACCTAGAAGATGGCTGAAAGGAAAGGGTTTTGCTTTTGTAAAAAAAAAACAAAAATTATGCTAAACAGAATCACAAAGTCATGACTCTTATAACTTAATCAATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAA</canonical>
            <polymorphic>GGCTTCTATTAAGGGACAGTTACCTAGAAGATGGCTGAAAGGAAAGGGTTTTGCTTTTGTAAAAAAAAAACAAAAATTATGCTAAACAGAATCACAAAGTCATGACTCTTATAACTTAATCAATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGAMAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTTTGGATAATAGAAGAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>AAACAAAATCCTGCATACCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>TGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>TGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGAMAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24733</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>98355</contig_pos>
        <strand>+</strand>
        <context>aaattgtcaa[C/T]kttgagcyca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAA</left_flank>
        <right_flank>TTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTATGCTAAACAGAATCACAAAGTCATGACTCTTATAACTTAATCAATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATT</canonical>
            <polymorphic>AATTATGCTAAACAGAATCACAAAGTCATGACTCTTATAACTTAATCAATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAAYTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>497 464 39</canonical_bands>
                <polymorphic_bands>961 39</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>497 222 116 81 45 39</canonical_bands>
                <polymorphic_bands>578 222 116 45 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAATAGATGGTTGGGATGATT</pcr_primer_p1>
		<pcr_primer_p2>AAACAAAATCCTGCATACCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAAYTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24734</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>98356</contig_pos>
        <strand>+</strand>
        <context>aattgtcaay[G/T]ttgagcycaw</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAAC</left_flank>
        <right_flank>TTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATGCTAAACAGAATCACAAAGTCATGACTCTTATAACTTAATCAATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTC</canonical>
            <polymorphic>ATTATGCTAAACAGAATCACAAAGTCATGACTCTTATAACTTAATCAATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACKTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATAGATGGTTGGGATGATT</pcr_primer_p1>
		<pcr_primer_p2>AAACAAAATCCTGCATACCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACKTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24735</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>98363</contig_pos>
        <strand>+</strand>
        <context>aaykttgagc[C/T]cawwtatcty</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGC</left_flank>
        <right_flank>CAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAACAGAATCACAAAGTCATGACTCTTATAACTTAATCAATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAA</canonical>
            <polymorphic>TAAACAGAATCACAAAGTCATGACTCTTATAACTTAATCAATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCYCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>262 236 155 129 129 84 5</canonical_bands>
                <polymorphic_bands>365 262 155 129 84 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 230 132 129 9</canonical_bands>
                <polymorphic_bands>629 230 132 9</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>500 239 132 129</canonical_bands>
                <polymorphic_bands>629 239 132</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>500 230 132 129 9</canonical_bands>
                <polymorphic_bands>629 230 132 9</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>205 162 138 129 129 62 60 32 31 24 17 6 5</canonical_bands>
                <polymorphic_bands>334 162 138 129 62 60 32 31 24 17 6 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>498 239 134 129</canonical_bands>
                <polymorphic_bands>627 239 134</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAATAGATGGTTGGGATGATT</pcr_primer_p1>
		<pcr_primer_p2>AAACAAAATCCTGCATACCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCYCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24736</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>98366</contig_pos>
        <strand>+</strand>
        <context>kttgagcyca[A/T]wtatctyggt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCA</left_flank>
        <right_flank>TTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGAATCACAAAGTCATGACTCTTATAACTTAATCAATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGT</canonical>
            <polymorphic>ACAGAATCACAAAGTCATGACTCTTATAACTTAATCAATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAWTTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>110 94 75 70 67 67 63 56 48 47 40 40 35 32 31 29 25 19 15 10 9 9 9</canonical_bands>
                <polymorphic_bands>110 94 75 70 67 67 63 56 50 48 47 40 40 35 32 29 25 15 10 9 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAATAGATGGTTGGGATGATT</pcr_primer_p1>
		<pcr_primer_p2>AAACAAAATCCTGCATACCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAWTTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24737</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>98367</contig_pos>
        <strand>+</strand>
        <context>ttgagcycaw[A/T]tatctyggtt</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAA</left_flank>
        <right_flank>TATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAATCACAAAGTCATGACTCTTATAACTTAATCAATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTG</canonical>
            <polymorphic>CAGAATCACAAAGTCATGACTCTTATAACTTAATCAATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAAWTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>110 94 75 70 67 67 63 56 47 47 40 40 35 32 31 29 25 19 16 10 9 9 9</canonical_bands>
                <polymorphic_bands>110 94 75 70 67 67 63 56 50 47 47 40 40 35 32 29 25 16 10 9 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAATAGATGGTTGGGATGATT</pcr_primer_p1>
		<pcr_primer_p2>AAACAAAATCCTGCATACCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAAWTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24738</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>98373</contig_pos>
        <strand>+</strand>
        <context>ycawwtatct[C/T]ggttcctrtr</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCT</left_flank>
        <right_flank>GGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACAAAGTCATGACTCTTATAACTTAATCAATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTGCAATAA</canonical>
            <polymorphic>CACAAAGTCATGACTCTTATAACTTAATCAATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTYGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTGCAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATAGATGGTTGGGATGATT</pcr_primer_p1>
		<pcr_primer_p2>AAACAAAATCCTGCATACCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTYGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24739</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>98381</contig_pos>
        <strand>+</strand>
        <context>ctyggttcct[A/G]traragrtaw</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCT</left_flank>
        <right_flank>TAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGACTCTTATAACTTAATCAATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTGCAATAAGCTAAGCT</canonical>
            <polymorphic>CATGACTCTTATAACTTAATCAATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTRTAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTGCAATAAGCTAAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATAGATGGTTGGGATGATT</pcr_primer_p1>
		<pcr_primer_p2>AAACAAAATCCTGCATACCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTRTAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24740</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>98383</contig_pos>
        <strand>+</strand>
        <context>yggttcctrt[A/G]aragrtawca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTAT</left_flank>
        <right_flank>AGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACTCTTATAACTTAATCAATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTGCAATAAGCTAAGCTCT</canonical>
            <polymorphic>TGACTCTTATAACTTAATCAATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATRAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTGCAATAAGCTAAGCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATAGATGGTTGGGATGATT</pcr_primer_p1>
		<pcr_primer_p2>AAACAAAATCCTGCATACCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATRAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24741</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>98385</contig_pos>
        <strand>+</strand>
        <context>gttcctrtra[A/G]agrtawcaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAA</left_flank>
        <right_flank>AGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCTTATAACTTAATCAATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTGCAATAAGCTAAGCTCTTG</canonical>
            <polymorphic>ACTCTTATAACTTAATCAATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAARAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTGCAATAAGCTAAGCTCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATAGATGGTTGGGATGATT</pcr_primer_p1>
		<pcr_primer_p2>AAACAAAATCCTGCATACCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAARAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24742</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>98388</contig_pos>
        <strand>+</strand>
        <context>cctrtrarag[A/G]tawcaaaaak</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAG</left_flank>
        <right_flank>TATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTATAACTTAATCAATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTGCAATAAGCTAAGCTCTTGGGT</canonical>
            <polymorphic>CTTATAACTTAATCAATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGRTATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTGCAATAAGCTAAGCTCTTGGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>501 368 73 58</canonical_bands>
                <polymorphic_bands>869 73 58</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAATAGATGGTTGGGATGATT</pcr_primer_p1>
		<pcr_primer_p2>AAACAAAATCCTGCATACCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGRTATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24743</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>98391</contig_pos>
        <strand>+</strand>
        <context>rtraragrta[A/T]caaaaaktkg</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATA</left_flank>
        <right_flank>CAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAACTTAATCAATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTGCAATAAGCTAAGCTCTTGGGTCCT</canonical>
            <polymorphic>ATAACTTAATCAATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATAWCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTGCAATAAGCTAAGCTCTTGGGTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>498 368 73 61</canonical_bands>
                <polymorphic_bands>866 73 61</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAATAGATGGTTGGGATGATT</pcr_primer_p1>
		<pcr_primer_p2>AAACAAAATCCTGCATACCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATAWCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24744</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>98398</contig_pos>
        <strand>+</strand>
        <context>rtawcaaaaa[G/T]tkgycaactg</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAA</left_flank>
        <right_flank>TTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCAATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTGCAATAAGCTAAGCTCTTGGGTCCTGCAAAAT</canonical>
            <polymorphic>AATCAATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAAKTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTGCAATAAGCTAAGCTCTTGGGTCCTGCAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>393 201 168 134 79 25</canonical_bands>
                <polymorphic_bands>393 247 201 134 25</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>110 94 75 70 67 67 63 56 47 47 40 40 35 32 31 29 25 19 16 10 9 9 9</canonical_bands>
                <polymorphic_bands>110 94 87 75 70 67 67 63 47 47 40 40 35 32 29 25 19 16 10 9 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAATAGATGGTTGGGATGATT</pcr_primer_p1>
		<pcr_primer_p2>AAACAAAATCCTGCATACCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAAKTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24745</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>98400</contig_pos>
        <strand>+</strand>
        <context>awcaaaaakt[G/T]gycaactgay</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATT</left_flank>
        <right_flank>GCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTGCAATAAGCTAAGCTCTTGGGTCCTGCAAAATGA</canonical>
            <polymorphic>TCAATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTKGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTGCAATAAGCTAAGCTCTTGGGTCCTGCAAAATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>391 203 168 134 79 25</canonical_bands>
                <polymorphic_bands>391 247 203 134 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAATAGATGGTTGGGATGATT</pcr_primer_p1>
		<pcr_primer_p2>AAACAAAATCCTGCATACCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTKGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24746</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>98402</contig_pos>
        <strand>+</strand>
        <context>caaaaaktkg[C/T]caactgayaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTG</left_flank>
        <right_flank>CAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTGCAATAAGCTAAGCTCTTGGGTCCTGCAAAATGAGG</canonical>
            <polymorphic>AATGATTCATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGYCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTGCAATAAGCTAAGCTCTTGGGTCCTGCAAAATGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATAGATGGTTGGGATGATT</pcr_primer_p1>
		<pcr_primer_p2>AAACAAAATCCTGCATACCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGYCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24747</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>98410</contig_pos>
        <strand>+</strand>
        <context>kgycaactga[C/T]aaaagattkc</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGA</left_flank>
        <right_flank>AAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTGCAATAAGCTAAGCTCTTGGGTCCTGCAAAATGAGGTCAGAGAC</canonical>
            <polymorphic>ATATAATTTTTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGAYAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTGCAATAAGCTAAGCTCTTGGGTCCTGCAAAATGAGGTCAGAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATAGATGGTTGGGATGATT</pcr_primer_p1>
		<pcr_primer_p2>AAACAAAATCCTGCATACCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGAYAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24748</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>98419</contig_pos>
        <strand></strand>
        <context>ayaaaagatt[G/T]ctgataatgt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATT</left_flank>
        <right_flank>CTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTGCAATAAGCTAAGCTCTTGGGTCCTGCAAAATGAGGTCAGAGACTTCAGTTGA</canonical>
            <polymorphic>TTTTGGCTCAAAGACAAGGAACAGGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTKCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTGCAATAAGCTAAGCTCTTGGGTCCTGCAAAATGAGGTCAGAGACTTCAGTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATAGATGGTTGGGATGATT</pcr_primer_p1>
		<pcr_primer_p2>AAACAAAATCCTGCATACCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTKCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24749</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>98442</contig_pos>
        <strand></strand>
        <context>taaacatttt[A/T]tcatttraca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTT</left_flank>
        <right_flank>TCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTGCAATAAGCTAAGCTCTTGGGTCCTGCAAAATGAGGTCAGAGACTTCAGTTGATTGGAATTTTGCACATATTCAAA</canonical>
            <polymorphic>GGAAACTGAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTWTCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTGCAATAAGCTAAGCTCTTGGGTCCTGCAAAATGAGGTCAGAGACTTCAGTTGATTGGAATTTTGCACATATTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATAGATGGTTGGGATGATT</pcr_primer_p1>
		<pcr_primer_p2>AAACAAAATCCTGCATACCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTWTCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24750</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>98449</contig_pos>
        <strand></strand>
        <context>tttwtcattt[A/G]acaatttttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTT</left_flank>
        <right_flank>ACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTGCAATAAGCTAAGCTCTTGGGTCCTGCAAAATGAGGTCAGAGACTTCAGTTGATTGGAATTTTGCACATATTCAAATAAGTTA</canonical>
            <polymorphic>GAGAGGAGCCATAGCCATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTRACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTGCAATAAGCTAAGCTCTTGGGTCCTGCAAAATGAGGTCAGAGACTTCAGTTGATTGGAATTTTGCACATATTCAAATAAGTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>203 180 172 146 121 113 35 30</canonical_bands>
                <polymorphic_bands>203 181 180 172 121 113 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAATAGATGGTTGGGATGATT</pcr_primer_p1>
		<pcr_primer_p2>AAACAAAATCCTGCATACCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTRACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24751</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>98464</contig_pos>
        <strand></strand>
        <context>ttttttgata[C/T]ctctcatagg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATA</left_flank>
        <right_flank>CTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTGCAATAAGCTAAGCTCTTGGGTCCTGCAAAATGAGGTCAGAGACTTCAGTTGATTGGAATTTTGCACATATTCAAATAAGTTAATTTTTGAAGTTTTC</canonical>
            <polymorphic>CATATTCACACACACACACACACACACACACGCCAGAAAAATATTAGTGTGTGTCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATAYCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTGCAATAAGCTAAGCTCTTGGGTCCTGCAAAATGAGGTCAGAGACTTCAGTTGATTGGAATTTTGCACATATTCAAATAAGTTAATTTTTGAAGTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCTNNNNNAGG</site>
                <isoschizomers>
                    <enzyme>BstENI</enzyme>
                    <enzyme>EcoNI</enzyme>
                    <enzyme>XagI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAATAGATGGTTGGGATGATT</pcr_primer_p1>
		<pcr_primer_p2>AAACAAAATCCTGCATACCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATAYCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24752</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>98517</contig_pos>
        <strand>+</strand>
        <context>GAGGTGGGCT[G/T]AGAGCAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCT</left_flank>
        <right_flank>AGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTGCAATAAGCTAAGCTCTTGGGTCCTGCAAAATGAGGTCAGAGACTTCAGTTGATTGGAATTTTGCACATATTCAAATAAGTTAATTTTTGAAGTTTTCTTTTTTTTTTTGAACAAGTACTTTTAAGAAAAAAAAAGGTAGTATTGCAGGAA</canonical>
            <polymorphic>TCTGAAAAATTGGTTTTTTTCTGAGAAAAATCCAAAAACTGCTTCTTCTTGAAAAACACTCGATAATGGTCGCTTACTTATACACTCAACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTKAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTGCAATAAGCTAAGCTCTTGGGTCCTGCAAAATGAGGTCAGAGACTTCAGTTGATTGGAATTTTGCACATATTCAAATAAGTTAATTTTTGAAGTTTTCTTTTTTTTTTTGAACAAGTACTTTTAAGAAAAAAAAAGGTAGTATTGCAGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATAGATGGTTGGGATGATT</pcr_primer_p1>
		<pcr_primer_p2>AAGCTTTATAAATTTCAGCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>341</pcr_amplicon_size>
		<canonical_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTT</canonical_amplicon>
		<polymorphic_amplicon>TAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTKAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24753</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>98604</contig_pos>
        <strand>+</strand>
        <context>ATTCTATTTT[A/T]AAAATGTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTT</left_flank>
        <right_flank>AAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTGCAATAAGCTAAGCTCTTGGGTCCTGCAAAATGAGGTCAGAGACTTCAGTTGATTGGAATTTTGCACATATTCAAATAAGTTAATTTTTGAAGTTTTCTTTTTTTTTTTGAACAAGTACTTTTAAGAAAAAAAAAGGTAGTATTGCAGGAAACCTAAGATTAAAAAATCAATTTAACTGAAACCCAAAGCATTGCATTTGCTCCGAAAGAAGCCCACCGTTTGAGCTCAATTATCTCG</canonical>
            <polymorphic>AACGTCTTTCTGAAAATTAAGCTAATTGAGTGGTCTGTGCAAACAGTTTTGGCTAGGTGCTGTCAATAGTTTTTCTCTCTGGAAAATAAGACTAATTTTGGTGTTTTGGATAATAGAAGAAGGAGACACATCTAAATAGATGGTTGGGATGATTTTTTTATGAGAGAAAATTATGACAATTGAAGAAAATTTGTGTTTAAAAATAAAAATAAAATTTGCTTCTGTCATAGAAACTCACCGAAATTGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAAAATTTGCCAACTGATAAAAGATTGCTGATAATGTGGTAAACATTTTATCATTTAACAATTTTTTGATACCTCTCATAGGAACTTAGTTAATTGAGCTCAAAGAGCACATATGAGGTGGGCTTAGAGCAAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTWAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTTTAGCCTCTAATATTTTTGAGCTCAATTACCTCGGTTCCTATGATAGATATCAAAAATGAGTCTACTGATAAATTGCTTATTATAACATCAGCAATATTTTGTCAGTTGACCATTTTTCGATATCTCTTAAAGGAATTGAGGTAATTCAGCTCAAAGTGCAATAAGCTAAGCTCTTGGGTCCTGCAAAATGAGGTCAGAGACTTCAGTTGATTGGAATTTTGCACATATTCAAATAAGTTAATTTTTGAAGTTTTCTTTTTTTTTTTGAACAAGTACTTTTAAGAAAAAAAAAGGTAGTATTGCAGGAAACCTAAGATTAAAAAATCAATTTAACTGAAACCCAAAGCATTGCATTTGCTCCGAAAGAAGCCCACCGTTTGAGCTCAATTATCTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 302 198</canonical_bands>
                <polymorphic_bands>802 198</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>203 180 146 121 111 65 41 38 35 30 17 13</canonical_bands>
                <polymorphic_bands>203 180 151 146 111 65 41 38 35 17 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTAGGTATGCAGGATTTTGT</pcr_primer_p1>
		<pcr_primer_p2>AACTAGCGAATTTGCATTGA</pcr_primer_p2>
		<pcr_amplicon_size>187</pcr_amplicon_size>
		<canonical_amplicon>AAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTTAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTT</canonical_amplicon>
		<polymorphic_amplicon>AAATTAGGTATGCAGGATTTTGTTTTGGCATTTTTTGCTGAAATTTATAAAGCTTCAGGCGGGTGAAACACATTCTATTTTWAAAATGTGAAAGTTTTGTATTTTCTCAATTAACCTATTTTCTGATACAGTACACCTTGATAAAAATATTCAGATTTCAGACGATTTCAATGCAAATTCGCTAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24754</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>116110</contig_pos>
        <strand>+</strand>
        <context>ACTACTACGA[C/T]CATACCAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTGATGGACCACTTCGTTGCGACCAACTCCAGCCAAGATACTACTACGA</left_flank>
        <right_flank>CATACCAAGAAGCATTGTGTCGCTTTCTGGTGGAGAGGATGCTTGGGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCGCTACGGATGCTGCCCAGATGGTGAAACCACCGCTTTGGGACCAAGAAACGACGGTTGCGACAACTGCCGTTACGCCAAGCACGGATGCTGTGAAGACGGAGAGACCAAGGCTTTGGGACCAGACAGAGCCGGATGCCCAGCCACCACCACCCCACCATTCCTCATGGGAGGAACTGTCGCTCCACACAAGATCGTCGCTTGCAACCAGTCTCAAGAAAGTGGAACCGTTTGCGGATCTGGATACAAACTTGTAAGTTAAAAACGCATTTTGAAAAATAGTCCCTGACTTCTTTCTAGGCCTGGCACTACGACACCACCGAAGGGCGATGCAACCAATTCTGGTACGGAGGATGCGGTGGAAACGACAACAACTTCGCCACTCAAGAGATGTGCGAGACCATCTGCGTCGAGCCACCAAGCAAGGGAAGATGCTACTTGCCACGTGTTGATGGACCACTTCGTTGCGACCAACTCCAGCCAAGATACTACTACGATCATACCAAGAAGCATTGTGTCGCTTTCTGGTGGAGAGGATGCTTGGGAAATGCCAACAACTTCAACTCGTTCGAAGAGTGCTCCATGTTCTGTAAGGATGTTGGACCATACGACGAACCAACCACTGCCGCCCCACCAGCTCCACAGAACATCCAGCAGCAATACGTCCCAACTCCACAGCCACAAGAAATCGATATCGTTTCTGATGATCAATCCCAACAGCAACCACAACCACAACAACCACAACAGCCAGCAGCTCCACAGCAGCCACGTCAATCTATGGAAGACATCTGCAGATCTCGTCAAGATGCCGGACCATGCGAGACCTATTCCGACCAATGGTTCTACAACGCCTTCTCCCAACAGTGCGAGACCTTCACCTATGGAGGATGCGGAGGAAATTTGAATCGTTTCCGCACCAAAGATGAATGCGAACGCAGATGCTTCTTTGTACATGGAGGTCAACCATCTTCGGAGCAAGCTCAACCAGCTCAAGCCGC</canonical>
            <polymorphic>ACTCGCTACGGATGCTGCCCAGATGGTGAAACCACCGCTTTGGGACCAAGAAACGACGGTTGCGACAACTGCCGTTACGCCAAGCACGGATGCTGTGAAGACGGAGAGACCAAGGCTTTGGGACCAGACAGAGCCGGATGCCCAGCCACCACCACCCCACCATTCCTCATGGGAGGAACTGTCGCTCCACACAAGATCGTCGCTTGCAACCAGTCTCAAGAAAGTGGAACCGTTTGCGGATCTGGATACAAACTTGTAAGTTAAAAACGCATTTTGAAAAATAGTCCCTGACTTCTTTCTAGGCCTGGCACTACGACACCACCGAAGGGCGATGCAACCAATTCTGGTACGGAGGATGCGGTGGAAACGACAACAACTTCGCCACTCAAGAGATGTGCGAGACCATCTGCGTCGAGCCACCAAGCAAGGGAAGATGCTACTTGCCACGTGTTGATGGACCACTTCGTTGCGACCAACTCCAGCCAAGATACTACTACGAYCATACCAAGAAGCATTGTGTCGCTTTCTGGTGGAGAGGATGCTTGGGAAATGCCAACAACTTCAACTCGTTCGAAGAGTGCTCCATGTTCTGTAAGGATGTTGGACCATACGACGAACCAACCACTGCCGCCCCACCAGCTCCACAGAACATCCAGCAGCAATACGTCCCAACTCCACAGCCACAAGAAATCGATATCGTTTCTGATGATCAATCCCAACAGCAACCACAACCACAACAACCACAACAGCCAGCAGCTCCACAGCAGCCACGTCAATCTATGGAAGACATCTGCAGATCTCGTCAAGATGCCGGACCATGCGAGACCTATTCCGACCAATGGTTCTACAACGCCTTCTCCCAACAGTGCGAGACCTTCACCTATGGAGGATGCGGAGGAAATTTGAATCGTTTCCGCACCAAAGATGAATGCGAACGCAGATGCTTCTTTGTACATGGAGGTCAACCATCTTCGGAGCAAGCTCAACCAGCTCAAGCCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>259 210 205 194 88 44</canonical_bands>
                <polymorphic_bands>469 205 194 88 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGGAAACGACAACAACTTC</pcr_primer_p1>
		<pcr_primer_p2>GTCCAACATCCTTACAGAACAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTGGAAACGACAACAACTTCGCCACTCAAGAGATGTGCGAGACCATCTGCGTCGAGCCACCAAGCAAGGGAAGATGCTACTTGCCACGTGTTGATGGACCACTTCGTTGCGACCAACTCCAGCCAAGATACTACTACGATCATACCAAGAAGCATTGTGTCGCTTTCTGGTGGAGAGGATGCTTGGGAAATGCCAACAACTTCAACTCGTTCGAAGAGTGCTCCATGTTCTGTAAGGATGTTGGAC</canonical_amplicon>
		<polymorphic_amplicon>GTGGAAACGACAACAACTTCGCCACTCAAGAGATGTGCGAGACCATCTGCGTCGAGCCACCAAGCAAGGGAAGATGCTACTTGCCACGTGTTGATGGACCACTTCGTTGCGACCAACTCCAGCCAAGATACTACTACGAYCATACCAAGAAGCATTGTGTCGCTTTCTGGTGGAGAGGATGCTTGGGAAATGCCAACAACTTCAACTCGTTCGAAGAGTGCTCCATGTTCTGTAAGGATGTTGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24755</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>164404</contig_pos>
        <strand></strand>
        <context>ccaatttgag[C/A]gtcattatct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TAGGTACCGTATCTGCTCTGAAAGATGCCCACCCATACGTCCAATTTGAG</left_flank>
        <right_flank>GTCATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGATAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCCACTAACCTTCAACTTTGAGTCGATTTATCTCGGTTCCTGTCCAAGATATCAAAAATTGGTCAACTGATAAAATGTTTTATGATAAACATTTTGTTCGCTACTTTTTGATATCTTTTACACAAAATGAGATAATCGAGCTTAAAATTGACGGTTTATTAGAGAGCTTAAGGTAATTTTAGGGTTTTACGGAGTTACGGAACGAATTTTCAGAACAAAAACTTCTAAATGTCAAAATAAAAATTCACAAGTTCCGAAAATTCACAAGTCCCGACTTAACCGGAAATTTCGCAAAAATTCAAAAAAATTAAAATTTTTTTTCCGGAAATTCTGAAATTCAGAACCGTCTGATGCTTTTTTTCGACATTTTAGAACTTTATAATTTTTTCCATATTTCTGTATTTCCATATAACGAAAAACCTGTAACCAGGACCCAAAATATCAGACATAGGTACCGTATCTGCTCTGAAAGATGCCCACCCATACGTCCAATTTGAGCGTCATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGATAAAATATTTGTGACATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATCTTGCATAGGAACTGAGAGAAATTGGCCTCAAACTTAACAGTTAGCAAATTCCAAAAGCCACTCGAGGAGTTGAACTAGTGGGCTCACTTTTGGATGTCTCGAGTTACTACCAACCAGTGTTGAGCAAAAATATAATTTTGCTTCACGGATGACGGGAGACCGAAACGGAACAAAACATTTTTGACGGAAGAAGGAAACCGGAAGACGGAAAATCGAGGAATTGAAATTTTTAAATTTGAATTAGAAAGTATTTTAGATTCGAATTTTGGCATCGGTTTTGCAGATAGACGGAAAAAAATAATTTCGAAAAAGTTGACTCAAAATTCAACAAGTCCTGAAAAATCTTAGTCTTCCGTTTATTGTGATTTTTCCGGAGTTTACGGAAGACAGAAGACGG</canonical>
            <polymorphic>CCCCACTAACCTTCAACTTTGAGTCGATTTATCTCGGTTCCTGTCCAAGATATCAAAAATTGGTCAACTGATAAAATGTTTTATGATAAACATTTTGTTCGCTACTTTTTGATATCTTTTACACAAAATGAGATAATCGAGCTTAAAATTGACGGTTTATTAGAGAGCTTAAGGTAATTTTAGGGTTTTACGGAGTTACGGAACGAATTTTCAGAACAAAAACTTCTAAATGTCAAAATAAAAATTCACAAGTTCCGAAAATTCACAAGTCCCGACTTAACCGGAAATTTCGCAAAAATTCAAAAAAATTAAAATTTTTTTTCCGGAAATTCTGAAATTCAGAACCGTCTGATGCTTTTTTTCGACATTTTAGAACTTTATAATTTTTTCCATATTTCTGTATTTCCATATAACGAAAAACCTGTAACCAGGACCCAAAATATCAGACATAGGTACCGTATCTGCTCTGAAAGATGCCCACCCATACGTCCAATTTGAGMGTCATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGATAAAATATTTGTGACATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATCTTGCATAGGAACTGAGAGAAATTGGCCTCAAACTTAACAGTTAGCAAATTCCAAAAGCCACTCGAGGAGTTGAACTAGTGGGCTCACTTTTGGATGTCTCGAGTTACTACCAACCAGTGTTGAGCAAAAATATAATTTTGCTTCACGGATGACGGGAGACCGAAACGGAACAAAACATTTTTGACGGAAGAAGGAAACCGGAAGACGGAAAATCGAGGAATTGAAATTTTTAAATTTGAATTAGAAAGTATTTTAGATTCGAATTTTGGCATCGGTTTTGCAGATAGACGGAAAAAAATAATTTCGAAAAAGTTGACTCAAAATTCAACAAGTCCTGAAAAATCTTAGTCTTCCGTTTATTGTGATTTTTCCGGAGTTTACGGAAGACAGAAGACGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGGTACCGTATCTGCTCTGA</pcr_primer_p1>
		<pcr_primer_p2>TAGTAACTCGAGACATCCAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>ATAGGTACCGTATCTGCTCTGAAAGATGCCCACCCATACGTCCAATTTGAGCGTCATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGATAAAATATTTGTGACATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATCTTGCATAGGAACTGAGAGAAATTGGCCTCAAACTTAACAGTTAGCAAATTCCAAAAGCCACTCGAGGAGTTGAACTAGTGGGCTCACTTTTGGATGTCTCGAGTTACTA</canonical_amplicon>
		<polymorphic_amplicon>ATAGGTACCGTATCTGCTCTGAAAGATGCCCACCCATACGTCCAATTTGAGMGTCATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGATAAAATATTTGTGACATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATCTTGCATAGGAACTGAGAGAAATTGGCCTCAAACTTAACAGTTAGCAAATTCCAAAAGCCACTCGAGGAGTTGAACTAGTGGGCTCACTTTTGGATGTCTCGAGTTACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24756</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>164452</contig_pos>
        <strand>+</strand>
        <context>tatcaactga[C/T]aaaayatttk</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCGTCATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGA</left_flank>
        <right_flank>AAAATATTTGTGACATTATGATAAACAATTTATCAGTTGACAGATTTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATATCAAAAATTGGTCAACTGATAAAATGTTTTATGATAAACATTTTGTTCGCTACTTTTTGATATCTTTTACACAAAATGAGATAATCGAGCTTAAAATTGACGGTTTATTAGAGAGCTTAAGGTAATTTTAGGGTTTTACGGAGTTACGGAACGAATTTTCAGAACAAAAACTTCTAAATGTCAAAATAAAAATTCACAAGTTCCGAAAATTCACAAGTCCCGACTTAACCGGAAATTTCGCAAAAATTCAAAAAAATTAAAATTTTTTTTCCGGAAATTCTGAAATTCAGAACCGTCTGATGCTTTTTTTCGACATTTTAGAACTTTATAATTTTTTCCATATTTCTGTATTTCCATATAACGAAAAACCTGTAACCAGGACCCAAAATATCAGACATAGGTACCGTATCTGCTCTGAAAGATGCCCACCCATACGTCCAATTTGAGCGTCATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGATAAAATATTTGTGACATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATCTTGCATAGGAACTGAGAGAAATTGGCCTCAAACTTAACAGTTAGCAAATTCCAAAAGCCACTCGAGGAGTTGAACTAGTGGGCTCACTTTTGGATGTCTCGAGTTACTACCAACCAGTGTTGAGCAAAAATATAATTTTGCTTCACGGATGACGGGAGACCGAAACGGAACAAAACATTTTTGACGGAAGAAGGAAACCGGAAGACGGAAAATCGAGGAATTGAAATTTTTAAATTTGAATTAGAAAGTATTTTAGATTCGAATTTTGGCATCGGTTTTGCAGATAGACGGAAAAAAATAATTTCGAAAAAGTTGACTCAAAATTCAACAAGTCCTGAAAAATCTTAGTCTTCCGTTTATTGTGATTTTTCCGGAGTTTACGGAAGACAGAAGACGGATCAAATTTTTCCGGACAGAAGACGGAAGCCGGAAGACGGGACAAAAA</canonical>
            <polymorphic>GATATCAAAAATTGGTCAACTGATAAAATGTTTTATGATAAACATTTTGTTCGCTACTTTTTGATATCTTTTACACAAAATGAGATAATCGAGCTTAAAATTGACGGTTTATTAGAGAGCTTAAGGTAATTTTAGGGTTTTACGGAGTTACGGAACGAATTTTCAGAACAAAAACTTCTAAATGTCAAAATAAAAATTCACAAGTTCCGAAAATTCACAAGTCCCGACTTAACCGGAAATTTCGCAAAAATTCAAAAAAATTAAAATTTTTTTTCCGGAAATTCTGAAATTCAGAACCGTCTGATGCTTTTTTTCGACATTTTAGAACTTTATAATTTTTTCCATATTTCTGTATTTCCATATAACGAAAAACCTGTAACCAGGACCCAAAATATCAGACATAGGTACCGTATCTGCTCTGAAAGATGCCCACCCATACGTCCAATTTGAGCGTCATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGAYAAAATATTTGTGACATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATCTTGCATAGGAACTGAGAGAAATTGGCCTCAAACTTAACAGTTAGCAAATTCCAAAAGCCACTCGAGGAGTTGAACTAGTGGGCTCACTTTTGGATGTCTCGAGTTACTACCAACCAGTGTTGAGCAAAAATATAATTTTGCTTCACGGATGACGGGAGACCGAAACGGAACAAAACATTTTTGACGGAAGAAGGAAACCGGAAGACGGAAAATCGAGGAATTGAAATTTTTAAATTTGAATTAGAAAGTATTTTAGATTCGAATTTTGGCATCGGTTTTGCAGATAGACGGAAAAAAATAATTTCGAAAAAGTTGACTCAAAATTCAACAAGTCCTGAAAAATCTTAGTCTTCCGTTTATTGTGATTTTTCCGGAGTTTACGGAAGACAGAAGACGGATCAAATTTTTCCGGACAGAAGACGGAAGCCGGAAGACGGGACAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACCGTATCTGCTCTGAAAGA</pcr_primer_p1>
		<pcr_primer_p2>TAGTAACTCGAGACATCCAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>TACCGTATCTGCTCTGAAAGATGCCCACCCATACGTCCAATTTGAGCGTCATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGATAAAATATTTGTGACATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATCTTGCATAGGAACTGAGAGAAATTGGCCTCAAACTTAACAGTTAGCAAATTCCAAAAGCCACTCGAGGAGTTGAACTAGTGGGCTCACTTTTGGATGTCTCGAGTTACTA</canonical_amplicon>
		<polymorphic_amplicon>TACCGTATCTGCTCTGAAAGATGCCCACCCATACGTCCAATTTGAGCGTCATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGAYAAAATATTTGTGACATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATCTTGCATAGGAACTGAGAGAAATTGGCCTCAAACTTAACAGTTAGCAAATTCCAAAAGCCACTCGAGGAGTTGAACTAGTGGGCTCACTTTTGGATGTCTCGAGTTACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24757</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>164457</contig_pos>
        <strand>+</strand>
        <context>actgayaaaa[C/T]atttktgaya</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGATAAAA</left_flank>
        <right_flank>ATTTGTGACATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAAATTGGTCAACTGATAAAATGTTTTATGATAAACATTTTGTTCGCTACTTTTTGATATCTTTTACACAAAATGAGATAATCGAGCTTAAAATTGACGGTTTATTAGAGAGCTTAAGGTAATTTTAGGGTTTTACGGAGTTACGGAACGAATTTTCAGAACAAAAACTTCTAAATGTCAAAATAAAAATTCACAAGTTCCGAAAATTCACAAGTCCCGACTTAACCGGAAATTTCGCAAAAATTCAAAAAAATTAAAATTTTTTTTCCGGAAATTCTGAAATTCAGAACCGTCTGATGCTTTTTTTCGACATTTTAGAACTTTATAATTTTTTCCATATTTCTGTATTTCCATATAACGAAAAACCTGTAACCAGGACCCAAAATATCAGACATAGGTACCGTATCTGCTCTGAAAGATGCCCACCCATACGTCCAATTTGAGCGTCATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGATAAAATATTTGTGACATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATCTTGCATAGGAACTGAGAGAAATTGGCCTCAAACTTAACAGTTAGCAAATTCCAAAAGCCACTCGAGGAGTTGAACTAGTGGGCTCACTTTTGGATGTCTCGAGTTACTACCAACCAGTGTTGAGCAAAAATATAATTTTGCTTCACGGATGACGGGAGACCGAAACGGAACAAAACATTTTTGACGGAAGAAGGAAACCGGAAGACGGAAAATCGAGGAATTGAAATTTTTAAATTTGAATTAGAAAGTATTTTAGATTCGAATTTTGGCATCGGTTTTGCAGATAGACGGAAAAAAATAATTTCGAAAAAGTTGACTCAAAATTCAACAAGTCCTGAAAAATCTTAGTCTTCCGTTTATTGTGATTTTTCCGGAGTTTACGGAAGACAGAAGACGGATCAAATTTTTCCGGACAGAAGACGGAAGCCGGAAGACGGGACAAAAAAAATC</canonical>
            <polymorphic>CAAAAATTGGTCAACTGATAAAATGTTTTATGATAAACATTTTGTTCGCTACTTTTTGATATCTTTTACACAAAATGAGATAATCGAGCTTAAAATTGACGGTTTATTAGAGAGCTTAAGGTAATTTTAGGGTTTTACGGAGTTACGGAACGAATTTTCAGAACAAAAACTTCTAAATGTCAAAATAAAAATTCACAAGTTCCGAAAATTCACAAGTCCCGACTTAACCGGAAATTTCGCAAAAATTCAAAAAAATTAAAATTTTTTTTCCGGAAATTCTGAAATTCAGAACCGTCTGATGCTTTTTTTCGACATTTTAGAACTTTATAATTTTTTCCATATTTCTGTATTTCCATATAACGAAAAACCTGTAACCAGGACCCAAAATATCAGACATAGGTACCGTATCTGCTCTGAAAGATGCCCACCCATACGTCCAATTTGAGCGTCATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGATAAAAYATTTGTGACATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATCTTGCATAGGAACTGAGAGAAATTGGCCTCAAACTTAACAGTTAGCAAATTCCAAAAGCCACTCGAGGAGTTGAACTAGTGGGCTCACTTTTGGATGTCTCGAGTTACTACCAACCAGTGTTGAGCAAAAATATAATTTTGCTTCACGGATGACGGGAGACCGAAACGGAACAAAACATTTTTGACGGAAGAAGGAAACCGGAAGACGGAAAATCGAGGAATTGAAATTTTTAAATTTGAATTAGAAAGTATTTTAGATTCGAATTTTGGCATCGGTTTTGCAGATAGACGGAAAAAAATAATTTCGAAAAAGTTGACTCAAAATTCAACAAGTCCTGAAAAATCTTAGTCTTCCGTTTATTGTGATTTTTCCGGAGTTTACGGAAGACAGAAGACGGATCAAATTTTTCCGGACAGAAGACGGAAGCCGGAAGACGGGACAAAAAAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACCGTATCTGCTCTGAAAGA</pcr_primer_p1>
		<pcr_primer_p2>TAGTAACTCGAGACATCCAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>TACCGTATCTGCTCTGAAAGATGCCCACCCATACGTCCAATTTGAGCGTCATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGATAAAATATTTGTGACATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATCTTGCATAGGAACTGAGAGAAATTGGCCTCAAACTTAACAGTTAGCAAATTCCAAAAGCCACTCGAGGAGTTGAACTAGTGGGCTCACTTTTGGATGTCTCGAGTTACTA</canonical_amplicon>
		<polymorphic_amplicon>TACCGTATCTGCTCTGAAAGATGCCCACCCATACGTCCAATTTGAGCGTCATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGATAAAAYATTTGTGACATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATCTTGCATAGGAACTGAGAGAAATTGGCCTCAAACTTAACAGTTAGCAAATTCCAAAAGCCACTCGAGGAGTTGAACTAGTGGGCTCACTTTTGGATGTCTCGAGTTACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24758</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>164462</contig_pos>
        <strand>+</strand>
        <context>yaaaayattt[G/T]tgayattatg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGATAAAATATTT</left_flank>
        <right_flank>TGACATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATCTTGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGGTCAACTGATAAAATGTTTTATGATAAACATTTTGTTCGCTACTTTTTGATATCTTTTACACAAAATGAGATAATCGAGCTTAAAATTGACGGTTTATTAGAGAGCTTAAGGTAATTTTAGGGTTTTACGGAGTTACGGAACGAATTTTCAGAACAAAAACTTCTAAATGTCAAAATAAAAATTCACAAGTTCCGAAAATTCACAAGTCCCGACTTAACCGGAAATTTCGCAAAAATTCAAAAAAATTAAAATTTTTTTTCCGGAAATTCTGAAATTCAGAACCGTCTGATGCTTTTTTTCGACATTTTAGAACTTTATAATTTTTTCCATATTTCTGTATTTCCATATAACGAAAAACCTGTAACCAGGACCCAAAATATCAGACATAGGTACCGTATCTGCTCTGAAAGATGCCCACCCATACGTCCAATTTGAGCGTCATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGATAAAATATTTGTGACATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATCTTGCATAGGAACTGAGAGAAATTGGCCTCAAACTTAACAGTTAGCAAATTCCAAAAGCCACTCGAGGAGTTGAACTAGTGGGCTCACTTTTGGATGTCTCGAGTTACTACCAACCAGTGTTGAGCAAAAATATAATTTTGCTTCACGGATGACGGGAGACCGAAACGGAACAAAACATTTTTGACGGAAGAAGGAAACCGGAAGACGGAAAATCGAGGAATTGAAATTTTTAAATTTGAATTAGAAAGTATTTTAGATTCGAATTTTGGCATCGGTTTTGCAGATAGACGGAAAAAAATAATTTCGAAAAAGTTGACTCAAAATTCAACAAGTCCTGAAAAATCTTAGTCTTCCGTTTATTGTGATTTTTCCGGAGTTTACGGAAGACAGAAGACGGATCAAATTTTTCCGGACAGAAGACGGAAGCCGGAAGACGGGACAAAAAAAATCACGGA</canonical>
            <polymorphic>ATTGGTCAACTGATAAAATGTTTTATGATAAACATTTTGTTCGCTACTTTTTGATATCTTTTACACAAAATGAGATAATCGAGCTTAAAATTGACGGTTTATTAGAGAGCTTAAGGTAATTTTAGGGTTTTACGGAGTTACGGAACGAATTTTCAGAACAAAAACTTCTAAATGTCAAAATAAAAATTCACAAGTTCCGAAAATTCACAAGTCCCGACTTAACCGGAAATTTCGCAAAAATTCAAAAAAATTAAAATTTTTTTTCCGGAAATTCTGAAATTCAGAACCGTCTGATGCTTTTTTTCGACATTTTAGAACTTTATAATTTTTTCCATATTTCTGTATTTCCATATAACGAAAAACCTGTAACCAGGACCCAAAATATCAGACATAGGTACCGTATCTGCTCTGAAAGATGCCCACCCATACGTCCAATTTGAGCGTCATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGATAAAATATTTKTGACATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATCTTGCATAGGAACTGAGAGAAATTGGCCTCAAACTTAACAGTTAGCAAATTCCAAAAGCCACTCGAGGAGTTGAACTAGTGGGCTCACTTTTGGATGTCTCGAGTTACTACCAACCAGTGTTGAGCAAAAATATAATTTTGCTTCACGGATGACGGGAGACCGAAACGGAACAAAACATTTTTGACGGAAGAAGGAAACCGGAAGACGGAAAATCGAGGAATTGAAATTTTTAAATTTGAATTAGAAAGTATTTTAGATTCGAATTTTGGCATCGGTTTTGCAGATAGACGGAAAAAAATAATTTCGAAAAAGTTGACTCAAAATTCAACAAGTCCTGAAAAATCTTAGTCTTCCGTTTATTGTGATTTTTCCGGAGTTTACGGAAGACAGAAGACGGATCAAATTTTTCCGGACAGAAGACGGAAGCCGGAAGACGGGACAAAAAAAATCACGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>219 215 125 103 87 80 65 33 26 20 17 6 4</canonical_bands>
                <polymorphic_bands>219 215 183 125 87 65 33 26 20 17 6 4</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>353 229 148 136 134</canonical_bands>
                <polymorphic_bands>353 282 229 136</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACCGTATCTGCTCTGAAAGA</pcr_primer_p1>
		<pcr_primer_p2>TAGTAACTCGAGACATCCAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>TACCGTATCTGCTCTGAAAGATGCCCACCCATACGTCCAATTTGAGCGTCATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGATAAAATATTTGTGACATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATCTTGCATAGGAACTGAGAGAAATTGGCCTCAAACTTAACAGTTAGCAAATTCCAAAAGCCACTCGAGGAGTTGAACTAGTGGGCTCACTTTTGGATGTCTCGAGTTACTA</canonical_amplicon>
		<polymorphic_amplicon>TACCGTATCTGCTCTGAAAGATGCCCACCCATACGTCCAATTTGAGCGTCATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGATAAAATATTTKTGACATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATCTTGCATAGGAACTGAGAGAAATTGGCCTCAAACTTAACAGTTAGCAAATTCCAAAAGCCACTCGAGGAGTTGAACTAGTGGGCTCACTTTTGGATGTCTCGAGTTACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24759</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>164466</contig_pos>
        <strand>+</strand>
        <context>ayatttktga[C/T]attatgataa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTTTCTATAAAAGATATCAAAAATGTATCAACTGATAAAATATTTGTGA</left_flank>
        <right_flank>ATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATCTTGCATAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCAACTGATAAAATGTTTTATGATAAACATTTTGTTCGCTACTTTTTGATATCTTTTACACAAAATGAGATAATCGAGCTTAAAATTGACGGTTTATTAGAGAGCTTAAGGTAATTTTAGGGTTTTACGGAGTTACGGAACGAATTTTCAGAACAAAAACTTCTAAATGTCAAAATAAAAATTCACAAGTTCCGAAAATTCACAAGTCCCGACTTAACCGGAAATTTCGCAAAAATTCAAAAAAATTAAAATTTTTTTTCCGGAAATTCTGAAATTCAGAACCGTCTGATGCTTTTTTTCGACATTTTAGAACTTTATAATTTTTTCCATATTTCTGTATTTCCATATAACGAAAAACCTGTAACCAGGACCCAAAATATCAGACATAGGTACCGTATCTGCTCTGAAAGATGCCCACCCATACGTCCAATTTGAGCGTCATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGATAAAATATTTGTGACATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATCTTGCATAGGAACTGAGAGAAATTGGCCTCAAACTTAACAGTTAGCAAATTCCAAAAGCCACTCGAGGAGTTGAACTAGTGGGCTCACTTTTGGATGTCTCGAGTTACTACCAACCAGTGTTGAGCAAAAATATAATTTTGCTTCACGGATGACGGGAGACCGAAACGGAACAAAACATTTTTGACGGAAGAAGGAAACCGGAAGACGGAAAATCGAGGAATTGAAATTTTTAAATTTGAATTAGAAAGTATTTTAGATTCGAATTTTGGCATCGGTTTTGCAGATAGACGGAAAAAAATAATTTCGAAAAAGTTGACTCAAAATTCAACAAGTCCTGAAAAATCTTAGTCTTCCGTTTATTGTGATTTTTCCGGAGTTTACGGAAGACAGAAGACGGATCAAATTTTTCCGGACAGAAGACGGAAGCCGGAAGACGGGACAAAAAAAATCACGGAAGAC</canonical>
            <polymorphic>GTCAACTGATAAAATGTTTTATGATAAACATTTTGTTCGCTACTTTTTGATATCTTTTACACAAAATGAGATAATCGAGCTTAAAATTGACGGTTTATTAGAGAGCTTAAGGTAATTTTAGGGTTTTACGGAGTTACGGAACGAATTTTCAGAACAAAAACTTCTAAATGTCAAAATAAAAATTCACAAGTTCCGAAAATTCACAAGTCCCGACTTAACCGGAAATTTCGCAAAAATTCAAAAAAATTAAAATTTTTTTTCCGGAAATTCTGAAATTCAGAACCGTCTGATGCTTTTTTTCGACATTTTAGAACTTTATAATTTTTTCCATATTTCTGTATTTCCATATAACGAAAAACCTGTAACCAGGACCCAAAATATCAGACATAGGTACCGTATCTGCTCTGAAAGATGCCCACCCATACGTCCAATTTGAGCGTCATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGATAAAATATTTGTGAYATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATCTTGCATAGGAACTGAGAGAAATTGGCCTCAAACTTAACAGTTAGCAAATTCCAAAAGCCACTCGAGGAGTTGAACTAGTGGGCTCACTTTTGGATGTCTCGAGTTACTACCAACCAGTGTTGAGCAAAAATATAATTTTGCTTCACGGATGACGGGAGACCGAAACGGAACAAAACATTTTTGACGGAAGAAGGAAACCGGAAGACGGAAAATCGAGGAATTGAAATTTTTAAATTTGAATTAGAAAGTATTTTAGATTCGAATTTTGGCATCGGTTTTGCAGATAGACGGAAAAAAATAATTTCGAAAAAGTTGACTCAAAATTCAACAAGTCCTGAAAAATCTTAGTCTTCCGTTTATTGTGATTTTTCCGGAGTTTACGGAAGACAGAAGACGGATCAAATTTTTCCGGACAGAAGACGGAAGCCGGAAGACGGGACAAAAAAAATCACGGAAGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>357 229 148 134 132</canonical_bands>
                <polymorphic_bands>357 282 229 132</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACCGTATCTGCTCTGAAAGA</pcr_primer_p1>
		<pcr_primer_p2>TAGTAACTCGAGACATCCAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>TACCGTATCTGCTCTGAAAGATGCCCACCCATACGTCCAATTTGAGCGTCATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGATAAAATATTTGTGACATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATCTTGCATAGGAACTGAGAGAAATTGGCCTCAAACTTAACAGTTAGCAAATTCCAAAAGCCACTCGAGGAGTTGAACTAGTGGGCTCACTTTTGGATGTCTCGAGTTACTA</canonical_amplicon>
		<polymorphic_amplicon>TACCGTATCTGCTCTGAAAGATGCCCACCCATACGTCCAATTTGAGCGTCATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGATAAAATATTTGTGAYATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATCTTGCATAGGAACTGAGAGAAATTGGCCTCAAACTTAACAGTTAGCAAATTCCAAAAGCCACTCGAGGAGTTGAACTAGTGGGCTCACTTTTGGATGTCTCGAGTTACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24760</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>164669</contig_pos>
        <strand></strand>
        <context>acgggagacc[G/A]aaacggaaca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AACCAGTGTTGAGCAAAAATATAATTTTGCTTCACGGATGACGGGAGACC</left_flank>
        <right_flank>AAACGGAACAAAACATTTTTGACGGAAGAAGGAAACCGGAAGACGGAAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGTCCCGACTTAACCGGAAATTTCGCAAAAATTCAAAAAAATTAAAATTTTTTTTCCGGAAATTCTGAAATTCAGAACCGTCTGATGCTTTTTTTCGACATTTTAGAACTTTATAATTTTTTCCATATTTCTGTATTTCCATATAACGAAAAACCTGTAACCAGGACCCAAAATATCAGACATAGGTACCGTATCTGCTCTGAAAGATGCCCACCCATACGTCCAATTTGAGCGTCATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGATAAAATATTTGTGACATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATCTTGCATAGGAACTGAGAGAAATTGGCCTCAAACTTAACAGTTAGCAAATTCCAAAAGCCACTCGAGGAGTTGAACTAGTGGGCTCACTTTTGGATGTCTCGAGTTACTACCAACCAGTGTTGAGCAAAAATATAATTTTGCTTCACGGATGACGGGAGACCGAAACGGAACAAAACATTTTTGACGGAAGAAGGAAACCGGAAGACGGAAAATCGAGGAATTGAAATTTTTAAATTTGAATTAGAAAGTATTTTAGATTCGAATTTTGGCATCGGTTTTGCAGATAGACGGAAAAAAATAATTTCGAAAAAGTTGACTCAAAATTCAACAAGTCCTGAAAAATCTTAGTCTTCCGTTTATTGTGATTTTTCCGGAGTTTACGGAAGACAGAAGACGGATCAAATTTTTCCGGACAGAAGACGGAAGCCGGAAGACGGGACAAAAAAAATCACGGAAGACGGTATTCCGCTCAACACTGCTACCAACTTAGCTAGTGGCGCAACATCGATCAATGTACACACGTCACGTCAAAAGGGATACCGTAGCTTCAAAAAACCCCGAAGTGTTCCTTACCTCCCCATCTTTACAACAAAATAACTCGACAACCTATTTTTTTGGATTTTGGAAATTGTGATTCTGATTTAAGAATCTCAAAATTGCTT</canonical>
            <polymorphic>CAAGTCCCGACTTAACCGGAAATTTCGCAAAAATTCAAAAAAATTAAAATTTTTTTTCCGGAAATTCTGAAATTCAGAACCGTCTGATGCTTTTTTTCGACATTTTAGAACTTTATAATTTTTTCCATATTTCTGTATTTCCATATAACGAAAAACCTGTAACCAGGACCCAAAATATCAGACATAGGTACCGTATCTGCTCTGAAAGATGCCCACCCATACGTCCAATTTGAGCGTCATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGATAAAATATTTGTGACATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATCTTGCATAGGAACTGAGAGAAATTGGCCTCAAACTTAACAGTTAGCAAATTCCAAAAGCCACTCGAGGAGTTGAACTAGTGGGCTCACTTTTGGATGTCTCGAGTTACTACCAACCAGTGTTGAGCAAAAATATAATTTTGCTTCACGGATGACGGGAGACCRAAACGGAACAAAACATTTTTGACGGAAGAAGGAAACCGGAAGACGGAAAATCGAGGAATTGAAATTTTTAAATTTGAATTAGAAAGTATTTTAGATTCGAATTTTGGCATCGGTTTTGCAGATAGACGGAAAAAAATAATTTCGAAAAAGTTGACTCAAAATTCAACAAGTCCTGAAAAATCTTAGTCTTCCGTTTATTGTGATTTTTCCGGAGTTTACGGAAGACAGAAGACGGATCAAATTTTTCCGGACAGAAGACGGAAGCCGGAAGACGGGACAAAAAAAATCACGGAAGACGGTATTCCGCTCAACACTGCTACCAACTTAGCTAGTGGCGCAACATCGATCAATGTACACACGTCACGTCAAAAGGGATACCGTAGCTTCAAAAAACCCCGAAGTGTTCCTTACCTCCCCATCTTTACAACAAAATAACTCGACAACCTATTTTTTTGGATTTTGGAAATTGTGATTCTGATTTAAGAATCTCAAAATTGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTCGAGTTACTACCAACCAG</pcr_primer_p1>
		<pcr_primer_p2>CTAGCTAAGTTGGTAGCAGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>399</pcr_amplicon_size>
		<canonical_amplicon>GTCTCGAGTTACTACCAACCAGTGTTGAGCAAAAATATAATTTTGCTTCACGGATGACGGGAGACCGAAACGGAACAAAACATTTTTGACGGAAGAAGGAAACCGGAAGACGGAAAATCGAGGAATTGAAATTTTTAAATTTGAATTAGAAAGTATTTTAGATTCGAATTTTGGCATCGGTTTTGCAGATAGACGGAAAAAAATAATTTCGAAAAAGTTGACTCAAAATTCAACAAGTCCTGAAAAATCTTAGTCTTCCGTTTATTGTGATTTTTCCGGAGTTTACGGAAGACAGAAGACGGATCAAATTTTTCCGGACAGAAGACGGAAGCCGGAAGACGGGACAAAAAAAATCACGGAAGACGGTATTCCGCTCAACACTGCTACCAACTTAGCTAG</canonical_amplicon>
		<polymorphic_amplicon>GTCTCGAGTTACTACCAACCAGTGTTGAGCAAAAATATAATTTTGCTTCACGGATGACGGGAGACCRAAACGGAACAAAACATTTTTGACGGAAGAAGGAAACCGGAAGACGGAAAATCGAGGAATTGAAATTTTTAAATTTGAATTAGAAAGTATTTTAGATTCGAATTTTGGCATCGGTTTTGCAGATAGACGGAAAAAAATAATTTCGAAAAAGTTGACTCAAAATTCAACAAGTCCTGAAAAATCTTAGTCTTCCGTTTATTGTGATTTTTCCGGAGTTTACGGAAGACAGAAGACGGATCAAATTTTTCCGGACAGAAGACGGAAGCCGGAAGACGGGACAAAAAAAATCACGGAAGACGGTATTCCGCTCAACACTGCTACCAACTTAGCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24761</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>164738</contig_pos>
        <strand></strand>
        <context>ttgaaatttt[T/A]aaatttgaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTGACGGAAGAAGGAAACCGGAAGACGGAAAATCGAGGAATTGAAATTTT</left_flank>
        <right_flank>AAATTTGAATTAGAAAGTATTTTAGATTCGAATTTTGGCATCGGTTTTGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTCAGAACCGTCTGATGCTTTTTTTCGACATTTTAGAACTTTATAATTTTTTCCATATTTCTGTATTTCCATATAACGAAAAACCTGTAACCAGGACCCAAAATATCAGACATAGGTACCGTATCTGCTCTGAAAGATGCCCACCCATACGTCCAATTTGAGCGTCATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGATAAAATATTTGTGACATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATCTTGCATAGGAACTGAGAGAAATTGGCCTCAAACTTAACAGTTAGCAAATTCCAAAAGCCACTCGAGGAGTTGAACTAGTGGGCTCACTTTTGGATGTCTCGAGTTACTACCAACCAGTGTTGAGCAAAAATATAATTTTGCTTCACGGATGACGGGAGACCGAAACGGAACAAAACATTTTTGACGGAAGAAGGAAACCGGAAGACGGAAAATCGAGGAATTGAAATTTTTAAATTTGAATTAGAAAGTATTTTAGATTCGAATTTTGGCATCGGTTTTGCAGATAGACGGAAAAAAATAATTTCGAAAAAGTTGACTCAAAATTCAACAAGTCCTGAAAAATCTTAGTCTTCCGTTTATTGTGATTTTTCCGGAGTTTACGGAAGACAGAAGACGGATCAAATTTTTCCGGACAGAAGACGGAAGCCGGAAGACGGGACAAAAAAAATCACGGAAGACGGTATTCCGCTCAACACTGCTACCAACTTAGCTAGTGGCGCAACATCGATCAATGTACACACGTCACGTCAAAAGGGATACCGTAGCTTCAAAAAACCCCGAAGTGTTCCTTACCTCCCCATCTTTACAACAAAATAACTCGACAACCTATTTTTTTGGATTTTGGAAATTGTGATTCTGATTTAAGAATCTCAAAATTGCTTCCGCCTAACAACGCCAACACAAAAGAACCTCAAATTGTTTTCGTTCCTATATTCATCAATCTATCGTTT</canonical>
            <polymorphic>AAATTCAGAACCGTCTGATGCTTTTTTTCGACATTTTAGAACTTTATAATTTTTTCCATATTTCTGTATTTCCATATAACGAAAAACCTGTAACCAGGACCCAAAATATCAGACATAGGTACCGTATCTGCTCTGAAAGATGCCCACCCATACGTCCAATTTGAGCGTCATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGATAAAATATTTGTGACATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATCTTGCATAGGAACTGAGAGAAATTGGCCTCAAACTTAACAGTTAGCAAATTCCAAAAGCCACTCGAGGAGTTGAACTAGTGGGCTCACTTTTGGATGTCTCGAGTTACTACCAACCAGTGTTGAGCAAAAATATAATTTTGCTTCACGGATGACGGGAGACCGAAACGGAACAAAACATTTTTGACGGAAGAAGGAAACCGGAAGACGGAAAATCGAGGAATTGAAATTTTWAAATTTGAATTAGAAAGTATTTTAGATTCGAATTTTGGCATCGGTTTTGCAGATAGACGGAAAAAAATAATTTCGAAAAAGTTGACTCAAAATTCAACAAGTCCTGAAAAATCTTAGTCTTCCGTTTATTGTGATTTTTCCGGAGTTTACGGAAGACAGAAGACGGATCAAATTTTTCCGGACAGAAGACGGAAGCCGGAAGACGGGACAAAAAAAATCACGGAAGACGGTATTCCGCTCAACACTGCTACCAACTTAGCTAGTGGCGCAACATCGATCAATGTACACACGTCACGTCAAAAGGGATACCGTAGCTTCAAAAAACCCCGAAGTGTTCCTTACCTCCCCATCTTTACAACAAAATAACTCGACAACCTATTTTTTTGGATTTTGGAAATTGTGATTCTGATTTAAGAATCTCAAAATTGCTTCCGCCTAACAACGCCAACACAAAAGAACCTCAAATTGTTTTCGTTCCTATATTCATCAATCTATCGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>412 262 196 89 41</canonical_bands>
                <polymorphic_bands>608 262 89 41</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTCGAGTTACTACCAACCAG</pcr_primer_p1>
		<pcr_primer_p2>CTAGCTAAGTTGGTAGCAGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>399</pcr_amplicon_size>
		<canonical_amplicon>GTCTCGAGTTACTACCAACCAGTGTTGAGCAAAAATATAATTTTGCTTCACGGATGACGGGAGACCGAAACGGAACAAAACATTTTTGACGGAAGAAGGAAACCGGAAGACGGAAAATCGAGGAATTGAAATTTTTAAATTTGAATTAGAAAGTATTTTAGATTCGAATTTTGGCATCGGTTTTGCAGATAGACGGAAAAAAATAATTTCGAAAAAGTTGACTCAAAATTCAACAAGTCCTGAAAAATCTTAGTCTTCCGTTTATTGTGATTTTTCCGGAGTTTACGGAAGACAGAAGACGGATCAAATTTTTCCGGACAGAAGACGGAAGCCGGAAGACGGGACAAAAAAAATCACGGAAGACGGTATTCCGCTCAACACTGCTACCAACTTAGCTAG</canonical_amplicon>
		<polymorphic_amplicon>GTCTCGAGTTACTACCAACCAGTGTTGAGCAAAAATATAATTTTGCTTCACGGATGACGGGAGACCGAAACGGAACAAAACATTTTTGACGGAAGAAGGAAACCGGAAGACGGAAAATCGAGGAATTGAAATTTTWAAATTTGAATTAGAAAGTATTTTAGATTCGAATTTTGGCATCGGTTTTGCAGATAGACGGAAAAAAATAATTTCGAAAAAGTTGACTCAAAATTCAACAAGTCCTGAAAAATCTTAGTCTTCCGTTTATTGTGATTTTTCCGGAGTTTACGGAAGACAGAAGACGGATCAAATTTTTCCGGACAGAAGACGGAAGCCGGAAGACGGGACAAAAAAAATCACGGAAGACGGTATTCCGCTCAACACTGCTACCAACTTAGCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24762</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>164755</contig_pos>
        <strand></strand>
        <context>gaattagaaa[G/C]tattttagat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CCGGAAGACGGAAAATCGAGGAATTGAAATTTTTAAATTTGAATTAGAAA</left_flank>
        <right_flank>TATTTTAGATTCGAATTTTGGCATCGGTTTTGCAGATAGACGGAAAAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCTTTTTTTCGACATTTTAGAACTTTATAATTTTTTCCATATTTCTGTATTTCCATATAACGAAAAACCTGTAACCAGGACCCAAAATATCAGACATAGGTACCGTATCTGCTCTGAAAGATGCCCACCCATACGTCCAATTTGAGCGTCATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGATAAAATATTTGTGACATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATCTTGCATAGGAACTGAGAGAAATTGGCCTCAAACTTAACAGTTAGCAAATTCCAAAAGCCACTCGAGGAGTTGAACTAGTGGGCTCACTTTTGGATGTCTCGAGTTACTACCAACCAGTGTTGAGCAAAAATATAATTTTGCTTCACGGATGACGGGAGACCGAAACGGAACAAAACATTTTTGACGGAAGAAGGAAACCGGAAGACGGAAAATCGAGGAATTGAAATTTTTAAATTTGAATTAGAAAGTATTTTAGATTCGAATTTTGGCATCGGTTTTGCAGATAGACGGAAAAAAATAATTTCGAAAAAGTTGACTCAAAATTCAACAAGTCCTGAAAAATCTTAGTCTTCCGTTTATTGTGATTTTTCCGGAGTTTACGGAAGACAGAAGACGGATCAAATTTTTCCGGACAGAAGACGGAAGCCGGAAGACGGGACAAAAAAAATCACGGAAGACGGTATTCCGCTCAACACTGCTACCAACTTAGCTAGTGGCGCAACATCGATCAATGTACACACGTCACGTCAAAAGGGATACCGTAGCTTCAAAAAACCCCGAAGTGTTCCTTACCTCCCCATCTTTACAACAAAATAACTCGACAACCTATTTTTTTGGATTTTGGAAATTGTGATTCTGATTTAAGAATCTCAAAATTGCTTCCGCCTAACAACGCCAACACAAAAGAACCTCAAATTGTTTTCGTTCCTATATTCATCAATCTATCGTTTCTGCTTATCGCTTCCCA</canonical>
            <polymorphic>ATGCTTTTTTTCGACATTTTAGAACTTTATAATTTTTTCCATATTTCTGTATTTCCATATAACGAAAAACCTGTAACCAGGACCCAAAATATCAGACATAGGTACCGTATCTGCTCTGAAAGATGCCCACCCATACGTCCAATTTGAGCGTCATTATCTCGGTTTCTATAAAAGATATCAAAAATGTATCAACTGATAAAATATTTGTGACATTATGATAAACAATTTATCAGTTGACAGATTTTTAATATCTTGCATAGGAACTGAGAGAAATTGGCCTCAAACTTAACAGTTAGCAAATTCCAAAAGCCACTCGAGGAGTTGAACTAGTGGGCTCACTTTTGGATGTCTCGAGTTACTACCAACCAGTGTTGAGCAAAAATATAATTTTGCTTCACGGATGACGGGAGACCGAAACGGAACAAAACATTTTTGACGGAAGAAGGAAACCGGAAGACGGAAAATCGAGGAATTGAAATTTTTAAATTTGAATTAGAAASTATTTTAGATTCGAATTTTGGCATCGGTTTTGCAGATAGACGGAAAAAAATAATTTCGAAAAAGTTGACTCAAAATTCAACAAGTCCTGAAAAATCTTAGTCTTCCGTTTATTGTGATTTTTCCGGAGTTTACGGAAGACAGAAGACGGATCAAATTTTTCCGGACAGAAGACGGAAGCCGGAAGACGGGACAAAAAAAATCACGGAAGACGGTATTCCGCTCAACACTGCTACCAACTTAGCTAGTGGCGCAACATCGATCAATGTACACACGTCACGTCAAAAGGGATACCGTAGCTTCAAAAAACCCCGAAGTGTTCCTTACCTCCCCATCTTTACAACAAAATAACTCGACAACCTATTTTTTTGGATTTTGGAAATTGTGATTCTGATTTAAGAATCTCAAAATTGCTTCCGCCTAACAACGCCAACACAAAAGAACCTCAAATTGTTTTCGTTCCTATATTCATCAATCTATCGTTTCTGCTTATCGCTTCCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTCGAGTTACTACCAACCAG</pcr_primer_p1>
		<pcr_primer_p2>CTAGCTAAGTTGGTAGCAGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>399</pcr_amplicon_size>
		<canonical_amplicon>GTCTCGAGTTACTACCAACCAGTGTTGAGCAAAAATATAATTTTGCTTCACGGATGACGGGAGACCGAAACGGAACAAAACATTTTTGACGGAAGAAGGAAACCGGAAGACGGAAAATCGAGGAATTGAAATTTTTAAATTTGAATTAGAAAGTATTTTAGATTCGAATTTTGGCATCGGTTTTGCAGATAGACGGAAAAAAATAATTTCGAAAAAGTTGACTCAAAATTCAACAAGTCCTGAAAAATCTTAGTCTTCCGTTTATTGTGATTTTTCCGGAGTTTACGGAAGACAGAAGACGGATCAAATTTTTCCGGACAGAAGACGGAAGCCGGAAGACGGGACAAAAAAAATCACGGAAGACGGTATTCCGCTCAACACTGCTACCAACTTAGCTAG</canonical_amplicon>
		<polymorphic_amplicon>GTCTCGAGTTACTACCAACCAGTGTTGAGCAAAAATATAATTTTGCTTCACGGATGACGGGAGACCGAAACGGAACAAAACATTTTTGACGGAAGAAGGAAACCGGAAGACGGAAAATCGAGGAATTGAAATTTTTAAATTTGAATTAGAAASTATTTTAGATTCGAATTTTGGCATCGGTTTTGCAGATAGACGGAAAAAAATAATTTCGAAAAAGTTGACTCAAAATTCAACAAGTCCTGAAAAATCTTAGTCTTCCGTTTATTGTGATTTTTCCGGAGTTTACGGAAGACAGAAGACGGATCAAATTTTTCCGGACAGAAGACGGAAGCCGGAAGACGGGACAAAAAAAATCACGGAAGACGGTATTCCGCTCAACACTGCTACCAACTTAGCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24763</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>166420</contig_pos>
        <strand>+</strand>
        <context>GTGTTAGATT[C/T]TAAGGAACAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATT</left_flank>
        <right_flank>TAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTGTTTATCATAAAATAACCAATATTTTACCAATTAACACATTTTTGATATCTCTTACAAGAACCGAGATAATCAAGCTTAAACAGCGCGCATCTTGGCGTTCCATCAGAGAGTTTACGGCTACTAGGTTCTCACTTTGAGCTTAATTATCTTAGCACCTGTAAGAGATATCAAAAATTGTTAGCTGACAAAATGTTTATCATAATATTATCAATATTTTATCAGTTGACAAAATTTTATTATTTTTTACAGAAATCGAGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACA</canonical>
            <polymorphic>AAACTGTTTATCATAAAATAACCAATATTTTACCAATTAACACATTTTTGATATCTCTTACAAGAACCGAGATAATCAAGCTTAAACAGCGCGCATCTTGGCGTTCCATCAGAGAGTTTACGGCTACTAGGTTCTCACTTTGAGCTTAATTATCTTAGCACCTGTAAGAGATATCAAAAATTGTTAGCTGACAAAATGTTTATCATAATATTATCAATATTTTATCAGTTGACAAAATTTTATTATTTTTTACAGAAATCGAGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTYTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>485 346 154 15</canonical_bands>
                <polymorphic_bands>485 361 154</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>292 228 190 103 101 54 17 15</canonical_bands>
                <polymorphic_bands>292 228 190 155 103 17 15</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>292 261 243 204</canonical_bands>
                <polymorphic_bands>465 292 243</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAATACGGTAAATTTAGTCAA</pcr_primer_p1>
		<pcr_primer_p2>GGAGTCTTAAAATCTAGGAATTGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCC</canonical_amplicon>
		<polymorphic_amplicon>GGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTYTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24764</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>166558</contig_pos>
        <strand></strand>
        <context>acactgtcac[A/C]tttgatccct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCAC</left_flank>
        <right_flank>TTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAGCTTAATTATCTTAGCACCTGTAAGAGATATCAAAAATTGTTAGCTGACAAAATGTTTATCATAATATTATCAATATTTTATCAGTTGACAAAATTTTATTATTTTTTACAGAAATCGAGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCT</canonical>
            <polymorphic>TTTGAGCTTAATTATCTTAGCACCTGTAAGAGATATCAAAAATTGTTAGCTGACAAAATGTTTATCATAATATTATCAATATTTTATCAGTTGACAAAATTTTATTATTTTTTACAGAAATCGAGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACMTTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGCCAATGACTCCAAATC</pcr_primer_p1>
		<pcr_primer_p2>AATTCGCTAAACCTGGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</canonical_amplicon>
		<polymorphic_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACMTTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24765</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>166581</contig_pos>
        <strand>+</strand>
        <context>tatctcggtt[C/T]ctatrmaagr</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTT</left_flank>
        <right_flank>CTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTAAGAGATATCAAAAATTGTTAGCTGACAAAATGTTTATCATAATATTATCAATATTTTATCAGTTGACAAAATTTTATTATTTTTTACAGAAATCGAGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCC</canonical>
            <polymorphic>CTGTAAGAGATATCAAAAATTGTTAGCTGACAAAATGTTTATCATAATATTATCAATATTTTATCAGTTGACAAAATTTTATTATTTTTTACAGAAATCGAGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTYCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>494 323 183</canonical_bands>
                <polymorphic_bands>817 183</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>462 369 133 36</canonical_bands>
                <polymorphic_bands>462 369 169</polymorphic_bands>
            </assay>
            <assay>
                <site>CCTNNNNNAGG</site>
                <isoschizomers>
                    <enzyme>BstENI</enzyme>
                    <enzyme>EcoNI</enzyme>
                    <enzyme>XagI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGCCAATGACTCCAAATC</pcr_primer_p1>
		<pcr_primer_p2>AATTCGCTAAACCTGGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</canonical_amplicon>
		<polymorphic_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTYCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24766</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>166586</contig_pos>
        <strand>+</strand>
        <context>cggttyctat[A/G]maagrtatca</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTAT</left_flank>
        <right_flank>CAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGATATCAAAAATTGTTAGCTGACAAAATGTTTATCATAATATTATCAATATTTTATCAGTTGACAAAATTTTATTATTTTTTACAGAAATCGAGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTT</canonical>
            <polymorphic>AGAGATATCAAAAATTGTTAGCTGACAAAATGTTTATCATAATATTATCAATATTTTATCAGTTGACAAAATTTTATTATTTTTTACAGAAATCGAGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATRCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 378 122</canonical_bands>
                <polymorphic_bands>878 122</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGCCAATGACTCCAAATC</pcr_primer_p1>
		<pcr_primer_p2>AATTCGCTAAACCTGGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</canonical_amplicon>
		<polymorphic_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATRCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24767</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>166587</contig_pos>
        <strand>+</strand>
        <context>ggttyctatr[A/C]aagrtatcaa</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATG</left_flank>
        <right_flank>AAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGATATCAAAAATTGTTAGCTGACAAAATGTTTATCATAATATTATCAATATTTTATCAGTTGACAAAATTTTATTATTTTTTACAGAAATCGAGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTT</canonical>
            <polymorphic>GAGATATCAAAAATTGTTAGCTGACAAAATGTTTATCATAATATTATCAATATTTTATCAGTTGACAAAATTTTATTATTTTTTACAGAAATCGAGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGMAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>499 378 123</canonical_bands>
                <polymorphic_bands>877 123</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGCCAATGACTCCAAATC</pcr_primer_p1>
		<pcr_primer_p2>AATTCGCTAAACCTGGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</canonical_amplicon>
		<polymorphic_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGMAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24768</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>166591</contig_pos>
        <strand>+</strand>
        <context>yctatrmaag[A/G]tatcaaaaat</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAG</left_flank>
        <right_flank>TATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCAAAAATTGTTAGCTGACAAAATGTTTATCATAATATTATCAATATTTTATCAGTTGACAAAATTTTATTATTTTTTACAGAAATCGAGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTA</canonical>
            <polymorphic>TATCAAAAATTGTTAGCTGACAAAATGTTTATCATAATATTATCAATATTTTATCAGTTGACAAAATTTTATTATTTTTTACAGAAATCGAGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGRTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>504 323 173</canonical_bands>
                <polymorphic_bands>827 173</polymorphic_bands>
            </assay>
            <assay>
                <site>CCTNNNNNAGG</site>
                <isoschizomers>
                    <enzyme>BstENI</enzyme>
                    <enzyme>EcoNI</enzyme>
                    <enzyme>XagI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGCCAATGACTCCAAATC</pcr_primer_p1>
		<pcr_primer_p2>AATTCGCTAAACCTGGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</canonical_amplicon>
		<polymorphic_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGRTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24769</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>166603</contig_pos>
        <strand>+</strand>
        <context>atcaaaaatg[C/T]rtcaactgac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATG</left_flank>
        <right_flank>GTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGCTGACAAAATGTTTATCATAATATTATCAATATTTTATCAGTTGACAAAATTTTATTATTTTTTACAGAAATCGAGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTATATCTTGCGTAT</canonical>
            <polymorphic>TTAGCTGACAAAATGTTTATCATAATATTATCAATATTTTATCAGTTGACAAAATTTTATTATTTTTTACAGAAATCGAGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGYGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTATATCTTGCGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGCCAATGACTCCAAATC</pcr_primer_p1>
		<pcr_primer_p2>AATTCGCTAAACCTGGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</canonical_amplicon>
		<polymorphic_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGYGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24770</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>166604</contig_pos>
        <strand>+</strand>
        <context>tcaaaaatgy[A/G]tcaactgaca</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGC</left_flank>
        <right_flank>TCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGCTGACAAAATGTTTATCATAATATTATCAATATTTTATCAGTTGACAAAATTTTATTATTTTTTACAGAAATCGAGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTATATCTTGCGTATC</canonical>
            <polymorphic>TAGCTGACAAAATGTTTATCATAATATTATCAATATTTTATCAGTTGACAAAATTTTATTATTTTTTACAGAAATCGAGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCRTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTATATCTTGCGTATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>453 315 90 51 46 45</canonical_bands>
                <polymorphic_bands>453 360 90 51 46</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>453 235 90 80 51 46 45</canonical_bands>
                <polymorphic_bands>453 235 125 90 51 46</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGCCAATGACTCCAAATC</pcr_primer_p1>
		<pcr_primer_p2>AATTCGCTAAACCTGGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</canonical_amplicon>
		<polymorphic_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCRTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24771</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>166655</contig_pos>
        <strand>+</strand>
        <context>atcagttgac[A/C]rmtttttrat</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGAC</left_flank>
        <right_flank>ACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTATTATTTTTTACAGAAATCGAGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTATATCTTGCGTATCCTACATTTTATAGAAGCATCAAAGAATTCAGAATTCAGAAGACATGTATCA</canonical>
            <polymorphic>AATTTTATTATTTTTTACAGAAATCGAGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACMACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTATATCTTGCGTATCCTACATTTTATAGAAGCATCAAAGAATTCAGAATTCAGAAGACATGTATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>180 143 136 100 84 69 63 46 36 31 31 25 17 13 10 8 6 2</canonical_bands>
                <polymorphic_bands>180 143 136 117 84 69 63 46 36 31 31 25 13 10 8 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGCCAATGACTCCAAATC</pcr_primer_p1>
		<pcr_primer_p2>AATTCGCTAAACCTGGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</canonical_amplicon>
		<polymorphic_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACMACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24772</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>166656</contig_pos>
        <strand>+</strand>
        <context>tcagttgacm[A/G]mtttttrata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACC</left_flank>
        <right_flank>CTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTATTATTTTTTACAGAAATCGAGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTATATCTTGCGTATCCTACATTTTATAGAAGCATCAAAGAATTCAGAATTCAGAAGACATGTATCAG</canonical>
            <polymorphic>ATTTTATTATTTTTTACAGAAATCGAGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCRCTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTATATCTTGCGTATCCTACATTTTATAGAAGCATCAAAGAATTCAGAATTCAGAAGACATGTATCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>180 143 136 100 85 68 63 46 36 31 31 25 17 13 10 8 6 2</canonical_bands>
                <polymorphic_bands>180 143 136 117 85 68 63 46 36 31 31 25 13 10 8 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGCCAATGACTCCAAATC</pcr_primer_p1>
		<pcr_primer_p2>AATTCGCTAAACCTGGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</canonical_amplicon>
		<polymorphic_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCRCTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24773</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>166657</contig_pos>
        <strand>+</strand>
        <context>cagttgacmr[A/C]tttttratat</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCA</left_flank>
        <right_flank>TTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTATTATTTTTTACAGAAATCGAGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTATATCTTGCGTATCCTACATTTTATAGAAGCATCAAAGAATTCAGAATTCAGAAGACATGTATCAGA</canonical>
            <polymorphic>TTTTATTATTTTTTACAGAAATCGAGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCAMTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTATATCTTGCGTATCCTACATTTTATAGAAGCATCAAAGAATTCAGAATTCAGAAGACATGTATCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>180 143 136 100 86 67 63 46 36 31 31 25 17 13 10 8 6 2</canonical_bands>
                <polymorphic_bands>180 143 136 117 86 67 63 46 36 31 31 25 13 10 8 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGCCAATGACTCCAAATC</pcr_primer_p1>
		<pcr_primer_p2>AATTCGCTAAACCTGGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</canonical_amplicon>
		<polymorphic_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCAMTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24774</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>166663</contig_pos>
        <strand>+</strand>
        <context>acmrmttttt[A/G]atatcwtkca</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTT</left_flank>
        <right_flank>ATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTTTTACAGAAATCGAGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTATATCTTGCGTATCCTACATTTTATAGAAGCATCAAAGAATTCAGAATTCAGAAGACATGTATCAGAATCCGT</canonical>
            <polymorphic>TATTTTTTACAGAAATCGAGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTRATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTATATCTTGCGTATCCTACATTTTATAGAAGCATCAAAGAATTCAGAATTCAGAAGACATGTATCAGAATCCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>502 281 217</canonical_bands>
                <polymorphic_bands>719 281</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGCCAATGACTCCAAATC</pcr_primer_p1>
		<pcr_primer_p2>AATTCGCTAAACCTGGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</canonical_amplicon>
		<polymorphic_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTRATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24775</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>166669</contig_pos>
        <strand>+</strand>
        <context>ttttratatc[A/T]tkcayaggaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATC</left_flank>
        <right_flank>TACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTACAGAAATCGAGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTATATCTTGCGTATCCTACATTTTATAGAAGCATCAAAGAATTCAGAATTCAGAAGACATGTATCAGAATCCGTACAAGA</canonical>
            <polymorphic>TTACAGAAATCGAGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCWTACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTATATCTTGCGTATCCTACATTTTATAGAAGCATCAAAGAATTCAGAATTCAGAAGACATGTATCAGAATCCGTACAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGCCAATGACTCCAAATC</pcr_primer_p1>
		<pcr_primer_p2>AATTCGCTAAACCTGGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</canonical_amplicon>
		<polymorphic_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCWTACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24776</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>166671</contig_pos>
        <strand>+</strand>
        <context>ttratatcwt[G/T/A]cayaggaayy</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T/A</alleles>
        <left_flank>TTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCAT</left_flank>
        <right_flank>CACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGAAATCGAGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTATATCTTGCGTATCCTACATTTTATAGAAGCATCAAAGAATTCAGAATTCAGAAGACATGTATCAGAATCCGTACAAGAAA</canonical>
            <polymorphic>ACAGAAATCGAGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATKCACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTATATCTTGCGTATCCTACATTTTATAGAAGCATCAAAGAATTCAGAATTCAGAAGACATGTATCAGAATCCGTACAAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGCCAATGACTCCAAATC</pcr_primer_p1>
		<pcr_primer_p2>AATTCGCTAAACCTGGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</canonical_amplicon>
		<polymorphic_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATKCACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24777</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>166674</contig_pos>
        <strand>+</strand>
        <context>atatcwtkca[C/T]aggaayygag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACA</left_flank>
        <right_flank>AGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAATCGAGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTATATCTTGCGTATCCTACATTTTATAGAAGCATCAAAGAATTCAGAATTCAGAAGACATGTATCAGAATCCGTACAAGAAATAG</canonical>
            <polymorphic>GAAATCGAGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACAYAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTATATCTTGCGTATCCTACATTTTATAGAAGCATCAAAGAATTCAGAATTCAGAAGACATGTATCAGAATCCGTACAAGAAATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>180 143 136 103 100 63 50 46 36 31 31 25 17 13 10 8 6 2</canonical_bands>
                <polymorphic_bands>180 160 136 103 100 63 50 46 36 31 31 25 13 10 8 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGCCAATGACTCCAAATC</pcr_primer_p1>
		<pcr_primer_p2>AATTCGCTAAACCTGGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</canonical_amplicon>
		<polymorphic_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACAYAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24778</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>166680</contig_pos>
        <strand>+</strand>
        <context>tkcayaggaa[C/T]ygagaraaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAA</left_flank>
        <right_flank>CGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTATATCTTGCGTATCCTACATTTTATAGAAGCATCAAAGAATTCAGAATTCAGAAGACATGTATCAGAATCCGTACAAGAAATAGAAGACG</canonical>
            <polymorphic>GAGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAAYCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTATATCTTGCGTATCCTACATTTTATAGAAGCATCAAAGAATTCAGAATTCAGAAGACATGTATCAGAATCCGTACAAGAAATAGAAGACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 329 111 49 12</canonical_bands>
                <polymorphic_bands>828 111 49 12</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>381 190 103 101 83 54 32 24 17 15</canonical_bands>
                <polymorphic_bands>381 205 103 101 83 54 32 24 17</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>396 261 204 83 32 24</canonical_bands>
                <polymorphic_bands>657 204 83 32 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGCCAATGACTCCAAATC</pcr_primer_p1>
		<pcr_primer_p2>AATTCGCTAAACCTGGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</canonical_amplicon>
		<polymorphic_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAAYCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24779</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>166681</contig_pos>
        <strand>+</strand>
        <context>kcayaggaay[C/T]gagaraaaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAAT</left_flank>
        <right_flank>GAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTATATCTTGCGTATCCTACATTTTATAGAAGCATCAAAGAATTCAGAATTCAGAAGACATGTATCAGAATCCGTACAAGAAATAGAAGACGT</canonical>
            <polymorphic>AGAAAATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATYGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTATATCTTGCGTATCCTACATTTTATAGAAGCATCAAAGAATTCAGAATTCAGAAGACATGTATCAGAATCCGTACAAGAAATAGAAGACGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 329 110 49 12</canonical_bands>
                <polymorphic_bands>829 110 49 12</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>381 190 103 101 83 54 31 25 17 15</canonical_bands>
                <polymorphic_bands>381 205 103 101 83 54 31 25 17</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>396 261 204 83 31 25</canonical_bands>
                <polymorphic_bands>657 204 83 31 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGCCAATGACTCCAAATC</pcr_primer_p1>
		<pcr_primer_p2>AATTCGCTAAACCTGGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</canonical_amplicon>
		<polymorphic_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATYGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24780</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>166686</contig_pos>
        <strand>+</strand>
        <context>ggaayygaga[A/G]aaaatgactc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGA</left_flank>
        <right_flank>AAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTATATCTTGCGTATCCTACATTTTATAGAAGCATCAAAGAATTCAGAATTCAGAAGACATGTATCAGAATCCGTACAAGAAATAGAAGACGTTTATT</canonical>
            <polymorphic>ATTAAGCTCAAAGTTGACGAGCTGGGAATCTATTAGTGGAAATACGGTAAATTTAGTCAAAGTAGATCAGACCCAAAGCTGGGGATTTCTATGTATTATTATGTCGACCCTGAATTCGAAAAACCCCGGAGTCCCAAGTTCCAATTACCATAAATTGATATGCTTCGAATTTCAAATATTGATGATCCCAAATTTCAAATCCCAAAAGTTATAGATCACAGAAGTGTTAGATTCTAAGGAACATTGGTCTGAGGATCTCAATCCAACAATTCCTAGATTTTAAGACTCCAATATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGARAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATTTTCAATTCTTGTAACTTCTTTTATACCTTTTCTCATTCTCTTTTTTCTTTTCCACAACTTGCCCCTCTAATGAAATTGAATGCCACAAAGTTGTAGAAACGAGTACCTACTACCAAAGATATCAGTTTTCACAAAATGTCCGCCGAGCTCTTGTCACATTGTAACAGGGATTACATGTCATGTTGAAAAGTGTTTTCTAGTGCAATTTGAAATTCATAAATTATGCTTCTTTTTCTTTTACTTTTTCCTACAAATTTAGAATTCACAGGAAACGAGTGAGGAGCAACGCATAATCTTCTAATGGATGTGAGATTCCTCCTCTTTTTCTATATCTTGCGTATCCTACATTTTATAGAAGCATCAAAGAATTCAGAATTCAGAAGACATGTATCAGAATCCGTACAAGAAATAGAAGACGTTTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGCCAATGACTCCAAATC</pcr_primer_p1>
		<pcr_primer_p2>AATTCGCTAAACCTGGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGAAAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</canonical_amplicon>
		<polymorphic_amplicon>TATGCCAATGACTCCAAATCGCAATGGCTCTGAAACCTCGTCATCCGTAAACCTCTTATAGAAGGGCCCCACACTGTCACATTTGATCCCTTATATCTCGGTTCCTATGCAAGGTATCAAAAATGCGTCAACTGACAAAACATTTTTGATATTATGATAAACAATTTATCAGTTGACCACTTTTTGATATCATACACAGGAATCGAGARAAAATGACTCAAAGTAAAAGTTGGGGACCCTTCTATTAGGACCTTCTATTAGAGGGCTCTCCAGGTTTAGCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24781</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>172569</contig_pos>
        <strand></strand>
        <context>tctcaaaaag[A/T]ggtcaactga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTCCTTTGAGCTCAATTATCTCGGTTCCTTGAAAAAATCTCAAAAAG</left_flank>
        <right_flank>GGTCAACTGATAAATTGTTATCATAATATCACCAACATTTTATTGGCTGA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCGAGATAATTGATCTCAAAGTGCACGAAAAAAATTATTGTCTAATTTGCAGGAATCATCTATGACAACTACGACACAACTAGGAAAATTCAACAAACTGTGGATGGAATCTATCGGTGAGCAAATTCAGATAGTTCCAACGTCTTCTAATAACTTCATTTCTTTCAGAATGGTAGTTGCCCTATTGCTCATCGTGATCGCTCTCATCATCATCGCCATATTCCTCATATGTTTCTTTCATTGCCGACGTCCGAACGAGGAGAGGTCGCCGCTTCACTCAAATCGCAAAAGTCATCCCATCGAAATCTGACCAATTCTTTCTCTTTCACCACTTTGCATAGCTGCTCGTGTTATGGGTCTCTGATTGTGTAACTATAATAAAACTCGTTTTTTGGAAATCTCCATTCTTCGAAAAATAAATAGATTCGGAAAACATCGAAAAAATATGAATTTCCTTTGAGCTCAATTATCTCGGTTCCTTGAAAAAATCTCAAAAAGAGGTCAACTGATAAATTGTTATCATAATATCACCAACATTTTATTGGCTGACAAATTTTTGATATATCTTCTTGGAACCGAGATAATTAAGCTCAAAGTTCATATATAGGATAAACTTTTAGTAGAGCATTTACAGCACTTTGAGCTTAATTATCTCGTTTCCTATGTCTCGGTTCCTATGTCAGAGATGTCAAACATGTGTCGACAAATAAATTGATTATCATAATATCACCAACATTTTATCAGTTGACAATCTTTTGATATCTCTCATAGGAACTTAGATAACTGAGCTCAAAGTGAACTTATGTTAGAGCAAATATGGTGGTCAACTTGAAGTCATGAAAAAGTATTTCAGAATTTTTTGATTTTTCTGAAAACTTCCGAGTATACTGACCAAAAATAGAGCTTCATTTTTGTAATTGACAACTTTTTCGTAAAAATCATACACAAATTCGAAAAAAGGTGCTTCTCGTACATGCTCTAATAGAAGCAAAATCTAGA</canonical>
            <polymorphic>ACCGAGATAATTGATCTCAAAGTGCACGAAAAAAATTATTGTCTAATTTGCAGGAATCATCTATGACAACTACGACACAACTAGGAAAATTCAACAAACTGTGGATGGAATCTATCGGTGAGCAAATTCAGATAGTTCCAACGTCTTCTAATAACTTCATTTCTTTCAGAATGGTAGTTGCCCTATTGCTCATCGTGATCGCTCTCATCATCATCGCCATATTCCTCATATGTTTCTTTCATTGCCGACGTCCGAACGAGGAGAGGTCGCCGCTTCACTCAAATCGCAAAAGTCATCCCATCGAAATCTGACCAATTCTTTCTCTTTCACCACTTTGCATAGCTGCTCGTGTTATGGGTCTCTGATTGTGTAACTATAATAAAACTCGTTTTTTGGAAATCTCCATTCTTCGAAAAATAAATAGATTCGGAAAACATCGAAAAAATATGAATTTCCTTTGAGCTCAATTATCTCGGTTCCTTGAAAAAATCTCAAAAAGWGGTCAACTGATAAATTGTTATCATAATATCACCAACATTTTATTGGCTGACAAATTTTTGATATATCTTCTTGGAACCGAGATAATTAAGCTCAAAGTTCATATATAGGATAAACTTTTAGTAGAGCATTTACAGCACTTTGAGCTTAATTATCTCGTTTCCTATGTCTCGGTTCCTATGTCAGAGATGTCAAACATGTGTCGACAAATAAATTGATTATCATAATATCACCAACATTTTATCAGTTGACAATCTTTTGATATCTCTCATAGGAACTTAGATAACTGAGCTCAAAGTGAACTTATGTTAGAGCAAATATGGTGGTCAACTTGAAGTCATGAAAAAGTATTTCAGAATTTTTTGATTTTTCTGAAAACTTCCGAGTATACTGACCAAAAATAGAGCTTCATTTTTGTAATTGACAACTTTTTCGTAAAAATCATACACAAATTCGAAAAAAGGTGCTTCTCGTACATGCTCTAATAGAAGCAAAATCTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATAAATAGATTCGGAAAACATC</pcr_primer_p1>
		<pcr_primer_p2>ATGTACGAGAAGCACCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>562</pcr_amplicon_size>
		<canonical_amplicon>AAATAAATAGATTCGGAAAACATCGAAAAAATATGAATTTCCTTTGAGCTCAATTATCTCGGTTCCTTGAAAAAATCTCAAAAAGAGGTCAACTGATAAATTGTTATCATAATATCACCAACATTTTATTGGCTGACAAATTTTTGATATATCTTCTTGGAACCGAGATAATTAAGCTCAAAGTTCATATATAGGATAAACTTTTAGTAGAGCATTTACAGCACTTTGAGCTTAATTATCTCGTTTCCTATGTCTCGGTTCCTATGTCAGAGATGTCAAACATGTGTCGACAAATAAATTGATTATCATAATATCACCAACATTTTATCAGTTGACAATCTTTTGATATCTCTCATAGGAACTTAGATAACTGAGCTCAAAGTGAACTTATGTTAGAGCAAATATGGTGGTCAACTTGAAGTCATGAAAAAGTATTTCAGAATTTTTTGATTTTTCTGAAAACTTCCGAGTATACTGACCAAAAATAGAGCTTCATTTTTGTAATTGACAACTTTTTCGTAAAAATCATACACAAATTCGAAAAAAGGTGCTTCTCGTACAT</canonical_amplicon>
		<polymorphic_amplicon>AAATAAATAGATTCGGAAAACATCGAAAAAATATGAATTTCCTTTGAGCTCAATTATCTCGGTTCCTTGAAAAAATCTCAAAAAGWGGTCAACTGATAAATTGTTATCATAATATCACCAACATTTTATTGGCTGACAAATTTTTGATATATCTTCTTGGAACCGAGATAATTAAGCTCAAAGTTCATATATAGGATAAACTTTTAGTAGAGCATTTACAGCACTTTGAGCTTAATTATCTCGTTTCCTATGTCTCGGTTCCTATGTCAGAGATGTCAAACATGTGTCGACAAATAAATTGATTATCATAATATCACCAACATTTTATCAGTTGACAATCTTTTGATATCTCTCATAGGAACTTAGATAACTGAGCTCAAAGTGAACTTATGTTAGAGCAAATATGGTGGTCAACTTGAAGTCATGAAAAAGTATTTCAGAATTTTTTGATTTTTCTGAAAACTTCCGAGTATACTGACCAAAAATAGAGCTTCATTTTTGTAATTGACAACTTTTTCGTAAAAATCATACACAAATTCGAAAAAAGGTGCTTCTCGTACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24782</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>172622</contig_pos>
        <strand></strand>
        <context>ttggctgaca[A/G]atttttgata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAACTGATAAATTGTTATCATAATATCACCAACATTTTATTGGCTGACA</left_flank>
        <right_flank>ATTTTTGATATATCTTCTTGGAACCGAGATAATTAAGCTCAAAGTTCATA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATCATCTATGACAACTACGACACAACTAGGAAAATTCAACAAACTGTGGATGGAATCTATCGGTGAGCAAATTCAGATAGTTCCAACGTCTTCTAATAACTTCATTTCTTTCAGAATGGTAGTTGCCCTATTGCTCATCGTGATCGCTCTCATCATCATCGCCATATTCCTCATATGTTTCTTTCATTGCCGACGTCCGAACGAGGAGAGGTCGCCGCTTCACTCAAATCGCAAAAGTCATCCCATCGAAATCTGACCAATTCTTTCTCTTTCACCACTTTGCATAGCTGCTCGTGTTATGGGTCTCTGATTGTGTAACTATAATAAAACTCGTTTTTTGGAAATCTCCATTCTTCGAAAAATAAATAGATTCGGAAAACATCGAAAAAATATGAATTTCCTTTGAGCTCAATTATCTCGGTTCCTTGAAAAAATCTCAAAAAGAGGTCAACTGATAAATTGTTATCATAATATCACCAACATTTTATTGGCTGACAAATTTTTGATATATCTTCTTGGAACCGAGATAATTAAGCTCAAAGTTCATATATAGGATAAACTTTTAGTAGAGCATTTACAGCACTTTGAGCTTAATTATCTCGTTTCCTATGTCTCGGTTCCTATGTCAGAGATGTCAAACATGTGTCGACAAATAAATTGATTATCATAATATCACCAACATTTTATCAGTTGACAATCTTTTGATATCTCTCATAGGAACTTAGATAACTGAGCTCAAAGTGAACTTATGTTAGAGCAAATATGGTGGTCAACTTGAAGTCATGAAAAAGTATTTCAGAATTTTTTGATTTTTCTGAAAACTTCCGAGTATACTGACCAAAAATAGAGCTTCATTTTTGTAATTGACAACTTTTTCGTAAAAATCATACACAAATTCGAAAAAAGGTGCTTCTCGTACATGCTCTAATAGAAGCAAAATCTAGACGTCTACTTTGAGCTCGATTTTCTCGGTTTCTATGAAAAATATTGAAAGTTTA</canonical>
            <polymorphic>GAATCATCTATGACAACTACGACACAACTAGGAAAATTCAACAAACTGTGGATGGAATCTATCGGTGAGCAAATTCAGATAGTTCCAACGTCTTCTAATAACTTCATTTCTTTCAGAATGGTAGTTGCCCTATTGCTCATCGTGATCGCTCTCATCATCATCGCCATATTCCTCATATGTTTCTTTCATTGCCGACGTCCGAACGAGGAGAGGTCGCCGCTTCACTCAAATCGCAAAAGTCATCCCATCGAAATCTGACCAATTCTTTCTCTTTCACCACTTTGCATAGCTGCTCGTGTTATGGGTCTCTGATTGTGTAACTATAATAAAACTCGTTTTTTGGAAATCTCCATTCTTCGAAAAATAAATAGATTCGGAAAACATCGAAAAAATATGAATTTCCTTTGAGCTCAATTATCTCGGTTCCTTGAAAAAATCTCAAAAAGAGGTCAACTGATAAATTGTTATCATAATATCACCAACATTTTATTGGCTGACARATTTTTGATATATCTTCTTGGAACCGAGATAATTAAGCTCAAAGTTCATATATAGGATAAACTTTTAGTAGAGCATTTACAGCACTTTGAGCTTAATTATCTCGTTTCCTATGTCTCGGTTCCTATGTCAGAGATGTCAAACATGTGTCGACAAATAAATTGATTATCATAATATCACCAACATTTTATCAGTTGACAATCTTTTGATATCTCTCATAGGAACTTAGATAACTGAGCTCAAAGTGAACTTATGTTAGAGCAAATATGGTGGTCAACTTGAAGTCATGAAAAAGTATTTCAGAATTTTTTGATTTTTCTGAAAACTTCCGAGTATACTGACCAAAAATAGAGCTTCATTTTTGTAATTGACAACTTTTTCGTAAAAATCATACACAAATTCGAAAAAAGGTGCTTCTCGTACATGCTCTAATAGAAGCAAAATCTAGACGTCTACTTTGAGCTCGATTTTCTCGGTTTCTATGAAAAATATTGAAAGTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>325 302 105 103 94 37 34</canonical_bands>
                <polymorphic_bands>405 325 105 94 37 34</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>189 144 136 105 64 63 62 47 40 37 34 32 31 16</canonical_bands>
                <polymorphic_bands>189 144 136 105 71 64 63 62 47 37 34 32 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATAAATAGATTCGGAAAACATC</pcr_primer_p1>
		<pcr_primer_p2>ATGTACGAGAAGCACCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>562</pcr_amplicon_size>
		<canonical_amplicon>AAATAAATAGATTCGGAAAACATCGAAAAAATATGAATTTCCTTTGAGCTCAATTATCTCGGTTCCTTGAAAAAATCTCAAAAAGAGGTCAACTGATAAATTGTTATCATAATATCACCAACATTTTATTGGCTGACAAATTTTTGATATATCTTCTTGGAACCGAGATAATTAAGCTCAAAGTTCATATATAGGATAAACTTTTAGTAGAGCATTTACAGCACTTTGAGCTTAATTATCTCGTTTCCTATGTCTCGGTTCCTATGTCAGAGATGTCAAACATGTGTCGACAAATAAATTGATTATCATAATATCACCAACATTTTATCAGTTGACAATCTTTTGATATCTCTCATAGGAACTTAGATAACTGAGCTCAAAGTGAACTTATGTTAGAGCAAATATGGTGGTCAACTTGAAGTCATGAAAAAGTATTTCAGAATTTTTTGATTTTTCTGAAAACTTCCGAGTATACTGACCAAAAATAGAGCTTCATTTTTGTAATTGACAACTTTTTCGTAAAAATCATACACAAATTCGAAAAAAGGTGCTTCTCGTACAT</canonical_amplicon>
		<polymorphic_amplicon>AAATAAATAGATTCGGAAAACATCGAAAAAATATGAATTTCCTTTGAGCTCAATTATCTCGGTTCCTTGAAAAAATCTCAAAAAGAGGTCAACTGATAAATTGTTATCATAATATCACCAACATTTTATTGGCTGACARATTTTTGATATATCTTCTTGGAACCGAGATAATTAAGCTCAAAGTTCATATATAGGATAAACTTTTAGTAGAGCATTTACAGCACTTTGAGCTTAATTATCTCGTTTCCTATGTCTCGGTTCCTATGTCAGAGATGTCAAACATGTGTCGACAAATAAATTGATTATCATAATATCACCAACATTTTATCAGTTGACAATCTTTTGATATCTCTCATAGGAACTTAGATAACTGAGCTCAAAGTGAACTTATGTTAGAGCAAATATGGTGGTCAACTTGAAGTCATGAAAAAGTATTTCAGAATTTTTTGATTTTTCTGAAAACTTCCGAGTATACTGACCAAAAATAGAGCTTCATTTTTGTAATTGACAACTTTTTCGTAAAAATCATACACAAATTCGAAAAAAGGTGCTTCTCGTACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24783</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>172798</contig_pos>
        <strand></strand>
        <context>atcataatat[C/T]accaacattt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTCAGAGATGTCAAACATGTGTCGACAAATAAATTGATTATCATAATAT</left_flank>
        <right_flank>ACCAACATTTTATCAGTTGACAATCTTTTGATATCTCTCATAGGAACTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTTTCTTTCATTGCCGACGTCCGAACGAGGAGAGGTCGCCGCTTCACTCAAATCGCAAAAGTCATCCCATCGAAATCTGACCAATTCTTTCTCTTTCACCACTTTGCATAGCTGCTCGTGTTATGGGTCTCTGATTGTGTAACTATAATAAAACTCGTTTTTTGGAAATCTCCATTCTTCGAAAAATAAATAGATTCGGAAAACATCGAAAAAATATGAATTTCCTTTGAGCTCAATTATCTCGGTTCCTTGAAAAAATCTCAAAAAGAGGTCAACTGATAAATTGTTATCATAATATCACCAACATTTTATTGGCTGACAAATTTTTGATATATCTTCTTGGAACCGAGATAATTAAGCTCAAAGTTCATATATAGGATAAACTTTTAGTAGAGCATTTACAGCACTTTGAGCTTAATTATCTCGTTTCCTATGTCTCGGTTCCTATGTCAGAGATGTCAAACATGTGTCGACAAATAAATTGATTATCATAATATCACCAACATTTTATCAGTTGACAATCTTTTGATATCTCTCATAGGAACTTAGATAACTGAGCTCAAAGTGAACTTATGTTAGAGCAAATATGGTGGTCAACTTGAAGTCATGAAAAAGTATTTCAGAATTTTTTGATTTTTCTGAAAACTTCCGAGTATACTGACCAAAAATAGAGCTTCATTTTTGTAATTGACAACTTTTTCGTAAAAATCATACACAAATTCGAAAAAAGGTGCTTCTCGTACATGCTCTAATAGAAGCAAAATCTAGACGTCTACTTTGAGCTCGATTTTCTCGGTTTCTATGAAAAATATTGAAAGTTTATTAACTAATAAAATATTGGTGATATTATGATATACAATTTATCAGTTGACAGATCTTTGATAATTTTTATAGGAACCGAGATAATTGAGCTCAAAATGCACATATATCAGATCAAGTACGTTAGTTTCTGTTAAAAGGATGCCTACCTTTGAGCTCAATTATCTCCCTTCCTGTGT</canonical>
            <polymorphic>ATGTTTCTTTCATTGCCGACGTCCGAACGAGGAGAGGTCGCCGCTTCACTCAAATCGCAAAAGTCATCCCATCGAAATCTGACCAATTCTTTCTCTTTCACCACTTTGCATAGCTGCTCGTGTTATGGGTCTCTGATTGTGTAACTATAATAAAACTCGTTTTTTGGAAATCTCCATTCTTCGAAAAATAAATAGATTCGGAAAACATCGAAAAAATATGAATTTCCTTTGAGCTCAATTATCTCGGTTCCTTGAAAAAATCTCAAAAAGAGGTCAACTGATAAATTGTTATCATAATATYACCAACATTTTATTGGCTGACAAATTTTTGATATATCTTCTTGGAACCGAGATAATTAAGCTCAAAGTTCATATATAGGATAAACTTTTAGTAGAGCATTTACAGCACTTTGAGCTTAATTATCTCGTTTCCTATGTCTCGGTTCCTATGTCAGAGATGTCAAACATGTGTCGACAAATAAATTGATTATCATAATATCACCAACATTTTATCAGTTGACAATCTTTTGATATCTCTCATAGGAACTTAGATAACTGAGCTCAAAGTGAACTTATGTTAGAGCAAATATGGTGGTCAACTTGAAGTCATGAAAAAGTATTTCAGAATTTTTTGATTTTTCTGAAAACTTCCGAGTATACTGACCAAAAATAGAGCTTCATTTTTGTAATTGACAACTTTTTCGTAAAAATCATACACAAATTCGAAAAAAGGTGCTTCTCGTACATGCTCTAATAGAAGCAAAATCTAGACGTCTACTTTGAGCTCGATTTTCTCGGTTTCTATGAAAAATATTGAAAGTTTATTAACTAATAAAATATTGGTGATATTATGATATACAATTTATCAGTTGACAGATCTTTGATAATTTTTATAGGAACCGAGATAATTGAGCTCAAAATGCACATATATCAGATCAAGTACGTTAGTTTCTGTTAAAAGGATGCCTACCTTTGAGCTCAATTATCTCCCTTCCTGTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>161 123 110 106 79 75 68 63 52 48 30 25 19 19 18 3 1</canonical_bands>
                <polymorphic_bands>267 123 110 79 75 68 63 52 48 30 25 19 19 18 3 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATAAATAGATTCGGAAAACATC</pcr_primer_p1>
		<pcr_primer_p2>ATGTACGAGAAGCACCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>562</pcr_amplicon_size>
		<canonical_amplicon>AAATAAATAGATTCGGAAAACATCGAAAAAATATGAATTTCCTTTGAGCTCAATTATCTCGGTTCCTTGAAAAAATCTCAAAAAGAGGTCAACTGATAAATTGTTATCATAATATYACCAACATTTTATTGGCTGACAAATTTTTGATATATCTTCTTGGAACCGAGATAATTAAGCTCAAAGTTCATATATAGGATAAACTTTTAGTAGAGCATTTACAGCACTTTGAGCTTAATTATCTCGTTTCCTATGTCTCGGTTCCTATGTCAGAGATGTCAAACATGTGTCGACAAATAAATTGATTATCATAATATCACCAACATTTTATCAGTTGACAATCTTTTGATATCTCTCATAGGAACTTAGATAACTGAGCTCAAAGTGAACTTATGTTAGAGCAAATATGGTGGTCAACTTGAAGTCATGAAAAAGTATTTCAGAATTTTTTGATTTTTCTGAAAACTTCCGAGTATACTGACCAAAAATAGAGCTTCATTTTTGTAATTGACAACTTTTTCGTAAAAATCATACACAAATTCGAAAAAAGGTGCTTCTCGTACAT</canonical_amplicon>
		<polymorphic_amplicon>AAATAAATAGATTCGGAAAACATCGAAAAAATATGAATTTCCTTTGAGCTCAATTATCTCGGTTCCTTGAAAAAATCTCAAAAAGAGGTCAACTGATAAATTGTTATCATAATATYACCAACATTTTATTGGCTGACAAATTTTTGATATATCTTCTTGGAACCGAGATAATTAAGCTCAAAGTTCATATATAGGATAAACTTTTAGTAGAGCATTTACAGCACTTTGAGCTTAATTATCTCGTTTCCTATGTCTCGGTTCCTATGTCAGAGATGTCAAACATGTGTCGACAAATAAATTGATTATCATAATATCACCAACATTTTATCAGTTGACAATCTTTTGATATCTCTCATAGGAACTTAGATAACTGAGCTCAAAGTGAACTTATGTTAGAGCAAATATGGTGGTCAACTTGAAGTCATGAAAAAGTATTTCAGAATTTTTTGATTTTTCTGAAAACTTCCGAGTATACTGACCAAAAATAGAGCTTCATTTTTGTAATTGACAACTTTTTCGTAAAAATCATACACAAATTCGAAAAAAGGTGCTTCTCGTACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24784</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>172991</contig_pos>
        <strand></strand>
        <context>tttgtaattg[A/G]caactttttc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAACTTCCGAGTATACTGACCAAAAATAGAGCTTCATTTTTGTAATTG</left_flank>
        <right_flank>CAACTTTTTCGTAAAAATCATACACAAATTCGAAAAAAGGTGCTTCTCGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATTCGGAAAACATCGAAAAAATATGAATTTCCTTTGAGCTCAATTATCTCGGTTCCTTGAAAAAATCTCAAAAAGAGGTCAACTGATAAATTGTTATCATAATATCACCAACATTTTATTGGCTGACAAATTTTTGATATATCTTCTTGGAACCGAGATAATTAAGCTCAAAGTTCATATATAGGATAAACTTTTAGTAGAGCATTTACAGCACTTTGAGCTTAATTATCTCGTTTCCTATGTCTCGGTTCCTATGTCAGAGATGTCAAACATGTGTCGACAAATAAATTGATTATCATAATATCACCAACATTTTATCAGTTGACAATCTTTTGATATCTCTCATAGGAACTTAGATAACTGAGCTCAAAGTGAACTTATGTTAGAGCAAATATGGTGGTCAACTTGAAGTCATGAAAAAGTATTTCAGAATTTTTTGATTTTTCTGAAAACTTCCGAGTATACTGACCAAAAATAGAGCTTCATTTTTGTAATTGACAACTTTTTCGTAAAAATCATACACAAATTCGAAAAAAGGTGCTTCTCGTACATGCTCTAATAGAAGCAAAATCTAGACGTCTACTTTGAGCTCGATTTTCTCGGTTTCTATGAAAAATATTGAAAGTTTATTAACTAATAAAATATTGGTGATATTATGATATACAATTTATCAGTTGACAGATCTTTGATAATTTTTATAGGAACCGAGATAATTGAGCTCAAAATGCACATATATCAGATCAAGTACGTTAGTTTCTGTTAAAAGGATGCCTACCTTTGAGCTCAATTATCTCCCTTCCTGTGTAAGATATCAAAAACGTGTCAATTGATAAAATATTGGTGGTATTATGATCAAAAAATTATCAGTTGACAGATTTTTTATATCTTTTGCGGGAACCGAGATAATTGAGCTCAAAGTCAAATGAAAACATCATAAATGAAAAAACATTTAAAATTCTTTTCTACTTTTTATTATGGCGAATCACAGTTTGAAAGAT</canonical>
            <polymorphic>AGATTCGGAAAACATCGAAAAAATATGAATTTCCTTTGAGCTCAATTATCTCGGTTCCTTGAAAAAATCTCAAAAAGAGGTCAACTGATAAATTGTTATCATAATATCACCAACATTTTATTGGCTGACAAATTTTTGATATATCTTCTTGGAACCGAGATAATTAAGCTCAAAGTTCATATATAGGATAAACTTTTAGTAGAGCATTTACAGCACTTTGAGCTTAATTATCTCGTTTCCTATGTCTCGGTTCCTATGTCAGAGATGTCAAACATGTGTCGACAAATAAATTGATTATCATAATATCACCAACATTTTATCAGTTGACAATCTTTTGATATCTCTCATAGGAACTTAGATAACTGAGCTCAAAGTGAACTTATGTTAGAGCAAATATGGTGGTCAACTTGAAGTCATGAAAAAGTATTTCAGAATTTTTTGATTTTTCTGAAAACTTCCGAGTATACTGACCAAAAATAGAGCTTCATTTTTGTAATTGRCAACTTTTTCGTAAAAATCATACACAAATTCGAAAAAAGGTGCTTCTCGTACATGCTCTAATAGAAGCAAAATCTAGACGTCTACTTTGAGCTCGATTTTCTCGGTTTCTATGAAAAATATTGAAAGTTTATTAACTAATAAAATATTGGTGATATTATGATATACAATTTATCAGTTGACAGATCTTTGATAATTTTTATAGGAACCGAGATAATTGAGCTCAAAATGCACATATATCAGATCAAGTACGTTAGTTTCTGTTAAAAGGATGCCTACCTTTGAGCTCAATTATCTCCCTTCCTGTGTAAGATATCAAAAACGTGTCAATTGATAAAATATTGGTGGTATTATGATCAAAAAATTATCAGTTGACAGATTTTTTATATCTTTTGCGGGAACCGAGATAATTGAGCTCAAAGTCAAATGAAAACATCATAAATGAAAAAACATTTAAAATTCTTTTCTACTTTTTATTATGGCGAATCACAGTTTGAAAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATAAATAGATTCGGAAAACATC</pcr_primer_p1>
		<pcr_primer_p2>ATGTACGAGAAGCACCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>562</pcr_amplicon_size>
		<canonical_amplicon>GACAACTTTTTCGTAAAAATCATACACAAATTCGAAAAAAGGTGCTTCTCGTACAT</canonical_amplicon>
		<polymorphic_amplicon>GRCAACTTTTTCGTAAAAATCATACACAAATTCGAAAAAAGGTGCTTCTCGTACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24785</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>175099</contig_pos>
        <strand></strand>
        <context>AATCGTTAAG[A/T]AAATTTTMCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGCCAATAAAAAATCCAAAGTTAATTGCGTCGTTAACTAAAATCGTTAAG</left_flank>
        <right_flank>AAATTTTACGGTTTTTCTTTTTCTCTATTTTTTAAGAGAAACTTTCTTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGTTAACATTTTTCATGTTTGTAACTTTTTTCTAGCTCTAACCGTTCTCGCAATATGCGTCTTTAAAGATTGCGCGCTCTGACAACGGGAGATAGAGACGCAGAGAAGAGAGAGCGCTCTCGTTTCTCTGCGTCTCCGCGAAACTGTAAAGGCGCATATCTCGAGAGCGGTTAAAGATATCAAAGTGCTGTAAACTGCAAAAATGAGAAAAATTTTATTCTGAACAATTTTCTTGTGGAAAATGTTTCGCCTAAACACAATGTGCCGAAATTTTGAAGATTTCAAAAAATCTTAAAAGGAATGTTTTCATGTGAAACGCTACTCCATCCATAATTACCAAACATCAGTGTCAAAAATAATTAATTTCAAAAACTCATTAGTTATTCTGCAGGACAAAAAATGGTCAATAATCAAAAGAAAGATGTCTCGTTTGTTTGCGAGATGGGGGCCAATAAAAAATCCAAAGTTAATTGCGTCGTTAACTAAAATCGTTAAGAAAATTTTACGGTTTTTCTTTTTCTCTATTTTTTAAGAGAAACTTTCTTTAGGAATTTTTGAAAACTAAAACCATGTCATCTAACCACACTGATAAAAGCCACCTCGTCTCCCCATACCATTAGCTTTCAGCCAAATTATCTCGGTTCCTATAGCAGATATTGAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTGACAGTAGTTTGCCTACTCTTTACGTTTATATTTGAGCCAATTTATCTCGGTTCCTATAGCAGATATTAAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTTACCAAACCTTTTGGCTCTCCGTTGATGCATGGCTTCAGTTTGCGCAAACCGTTGGC</canonical>
            <polymorphic>AATTGTTAACATTTTTCATGTTTGTAACTTTTTTCTAGCTCTAACCGTTCTCGCAATATGCGTCTTTAAAGATTGCGCGCTCTGACAACGGGAGATAGAGACGCAGAGAAGAGAGAGCGCTCTCGTTTCTCTGCGTCTCCGCGAAACTGTAAAGGCGCATATCTCGAGAGCGGTTAAAGATATCAAAGTGCTGTAAACTGCAAAAATGAGAAAAATTTTATTCTGAACAATTTTCTTGTGGAAAATGTTTCGCCTAAACACAATGTGCCGAAATTTTGAAGATTTCAAAAAATCTTAAAAGGAATGTTTTCATGTGAAACGCTACTCCATCCATAATTACCAAACATCAGTGTCAAAAATAATTAATTTCAAAAACTCATTAGTTATTCTGCAGGACAAAAAATGGTCAATAATCAAAAGAAAGATGTCTCGTTTGTTTGCGAGATGGGGGCCAATAAAAAATCCAAAGTTAATTGCGTCGTTAACTAAAATCGTTAAGWAAATTTTACGGTTTTTCTTTTTCTCTATTTTTTAAGAGAAACTTTCTTTAGGAATTTTTGAAAACTAAAACCATGTCATCTAACCACACTGATAAAAGCCACCTCGTCTCCCCATACCATTAGCTTTCAGCCAAATTATCTCGGTTCCTATAGCAGATATTGAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTGACAGTAGTTTGCCTACTCTTTACGTTTATATTTGAGCCAATTTATCTCGGTTCCTATAGCAGATATTAAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTTACCAAACCTTTTGGCTCTCCGTTGATGCATGGCTTCAGTTTGCGCAAACCGTTGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATAATTACCAAACATCAGTGT</pcr_primer_p1>
		<pcr_primer_p2>GATGACATGGTTTTAGTTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCATAATTACCAAACATCAGTGTCAAAAATAATTAATTTCAAAAACTCATTAGTTATTCTGCAGGACAAAAAATGGTCAATAATCAAAAGAAAGATGTCTCGTTTGTTTGCGAGATGGGGGCCAATAAAAAATCCAAAGTTAATTGCGTCGTTAACTAAAATCGTTAAGAAAATTTTACGGTTTTTCTTTTTCTCTATTTTTTAAGAGAAACTTTCTTTAGGAATTTTTGAAAACTAAAACCATGTCATC</canonical_amplicon>
		<polymorphic_amplicon>CCATAATTACCAAACATCAGTGTCAAAAATAATTAATTTCAAAAACTCATTAGTTATTCTGCAGGACAAAAAATGGTCAATAATCAAAAGAAAGATGTCTCGTTTGTTTGCGAGATGGGGGCCAATAAAAAATCCAAAGTTAATTGCGTCGTTAACTAAAATCGTTAAGWAAATTTTACGGTTTTTCTTTTTCTCTATTTTTTAAGAGAAACTTTCTTTAGGAATTTTTGAAAACTAAAACCATGTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24786</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>175107</contig_pos>
        <strand></strand>
        <context>AGWAAATTTT[A/C]CGGTTTTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAAATCCAAAGTTAATTGCGTCGTTAACTAAAATCGTTAAGAAAATTTT</left_flank>
        <right_flank>CGGTTTTTCTTTTTCTCTATTTTTTAAGAGAAACTTTCTTTAGGAATTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATTTTTCATGTTTGTAACTTTTTTCTAGCTCTAACCGTTCTCGCAATATGCGTCTTTAAAGATTGCGCGCTCTGACAACGGGAGATAGAGACGCAGAGAAGAGAGAGCGCTCTCGTTTCTCTGCGTCTCCGCGAAACTGTAAAGGCGCATATCTCGAGAGCGGTTAAAGATATCAAAGTGCTGTAAACTGCAAAAATGAGAAAAATTTTATTCTGAACAATTTTCTTGTGGAAAATGTTTCGCCTAAACACAATGTGCCGAAATTTTGAAGATTTCAAAAAATCTTAAAAGGAATGTTTTCATGTGAAACGCTACTCCATCCATAATTACCAAACATCAGTGTCAAAAATAATTAATTTCAAAAACTCATTAGTTATTCTGCAGGACAAAAAATGGTCAATAATCAAAAGAAAGATGTCTCGTTTGTTTGCGAGATGGGGGCCAATAAAAAATCCAAAGTTAATTGCGTCGTTAACTAAAATCGTTAAGAAAATTTTACGGTTTTTCTTTTTCTCTATTTTTTAAGAGAAACTTTCTTTAGGAATTTTTGAAAACTAAAACCATGTCATCTAACCACACTGATAAAAGCCACCTCGTCTCCCCATACCATTAGCTTTCAGCCAAATTATCTCGGTTCCTATAGCAGATATTGAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTGACAGTAGTTTGCCTACTCTTTACGTTTATATTTGAGCCAATTTATCTCGGTTCCTATAGCAGATATTAAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTTACCAAACCTTTTGGCTCTCCGTTGATGCATGGCTTCAGTTTGCGCAAACCGTTGGCTACTACAA</canonical>
            <polymorphic>ACATTTTTCATGTTTGTAACTTTTTTCTAGCTCTAACCGTTCTCGCAATATGCGTCTTTAAAGATTGCGCGCTCTGACAACGGGAGATAGAGACGCAGAGAAGAGAGAGCGCTCTCGTTTCTCTGCGTCTCCGCGAAACTGTAAAGGCGCATATCTCGAGAGCGGTTAAAGATATCAAAGTGCTGTAAACTGCAAAAATGAGAAAAATTTTATTCTGAACAATTTTCTTGTGGAAAATGTTTCGCCTAAACACAATGTGCCGAAATTTTGAAGATTTCAAAAAATCTTAAAAGGAATGTTTTCATGTGAAACGCTACTCCATCCATAATTACCAAACATCAGTGTCAAAAATAATTAATTTCAAAAACTCATTAGTTATTCTGCAGGACAAAAAATGGTCAATAATCAAAAGAAAGATGTCTCGTTTGTTTGCGAGATGGGGGCCAATAAAAAATCCAAAGTTAATTGCGTCGTTAACTAAAATCGTTAAGAAAATTTTMCGGTTTTTCTTTTTCTCTATTTTTTAAGAGAAACTTTCTTTAGGAATTTTTGAAAACTAAAACCATGTCATCTAACCACACTGATAAAAGCCACCTCGTCTCCCCATACCATTAGCTTTCAGCCAAATTATCTCGGTTCCTATAGCAGATATTGAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTGACAGTAGTTTGCCTACTCTTTACGTTTATATTTGAGCCAATTTATCTCGGTTCCTATAGCAGATATTAAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTTACCAAACCTTTTGGCTCTCCGTTGATGCATGGCTTCAGTTTGCGCAAACCGTTGGCTACTACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>362 231 144 102 78 38 31 14</canonical_bands>
                <polymorphic_bands>593 144 102 78 38 31 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATAATTACCAAACATCAGTGT</pcr_primer_p1>
		<pcr_primer_p2>GATGACATGGTTTTAGTTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCATAATTACCAAACATCAGTGTCAAAAATAATTAATTTCAAAAACTCATTAGTTATTCTGCAGGACAAAAAATGGTCAATAATCAAAAGAAAGATGTCTCGTTTGTTTGCGAGATGGGGGCCAATAAAAAATCCAAAGTTAATTGCGTCGTTAACTAAAATCGTTAAGAAAATTTTACGGTTTTTCTTTTTCTCTATTTTTTAAGAGAAACTTTCTTTAGGAATTTTTGAAAACTAAAACCATGTCATC</canonical_amplicon>
		<polymorphic_amplicon>CCATAATTACCAAACATCAGTGTCAAAAATAATTAATTTCAAAAACTCATTAGTTATTCTGCAGGACAAAAAATGGTCAATAATCAAAAGAAAGATGTCTCGTTTGTTTGCGAGATGGGGGCCAATAAAAAATCCAAAGTTAATTGCGTCGTTAACTAAAATCGTTAAGAAAATTTTMCGGTTTTTCTTTTTCTCTATTTTTTAAGAGAAACTTTCTTTAGGAATTTTTGAAAACTAAAACCATGTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24787</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>175229</contig_pos>
        <strand></strand>
        <context>ttagctttca[G/A]ccaawttatc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTAACCACACTGATAAAAGCCACCTCGTCTCCCCATACCATTAGCTTTCA</left_flank>
        <right_flank>CCAAATTATCTCGGTTCCTATAGCAGATATTGAAAATTGGTCAACTGATA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGCGTCTCCGCGAAACTGTAAAGGCGCATATCTCGAGAGCGGTTAAAGATATCAAAGTGCTGTAAACTGCAAAAATGAGAAAAATTTTATTCTGAACAATTTTCTTGTGGAAAATGTTTCGCCTAAACACAATGTGCCGAAATTTTGAAGATTTCAAAAAATCTTAAAAGGAATGTTTTCATGTGAAACGCTACTCCATCCATAATTACCAAACATCAGTGTCAAAAATAATTAATTTCAAAAACTCATTAGTTATTCTGCAGGACAAAAAATGGTCAATAATCAAAAGAAAGATGTCTCGTTTGTTTGCGAGATGGGGGCCAATAAAAAATCCAAAGTTAATTGCGTCGTTAACTAAAATCGTTAAGAAAATTTTACGGTTTTTCTTTTTCTCTATTTTTTAAGAGAAACTTTCTTTAGGAATTTTTGAAAACTAAAACCATGTCATCTAACCACACTGATAAAAGCCACCTCGTCTCCCCATACCATTAGCTTTCAGCCAAATTATCTCGGTTCCTATAGCAGATATTGAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTGACAGTAGTTTGCCTACTCTTTACGTTTATATTTGAGCCAATTTATCTCGGTTCCTATAGCAGATATTAAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTTACCAAACCTTTTGGCTCTCCGTTGATGCATGGCTTCAGTTTGCGCAAACCGTTGGCTACTACAATCGAAAATAGTATGGCGGACGACAGCAAGAAAATCCTCCGAAGCATTTTTTTGGACGAATTACCTATAAAAAAAAATTTACCTATAAAAAAAATTTTACTGGGTGGTTCAAATCAATCGAAA</canonical>
            <polymorphic>CTGCGTCTCCGCGAAACTGTAAAGGCGCATATCTCGAGAGCGGTTAAAGATATCAAAGTGCTGTAAACTGCAAAAATGAGAAAAATTTTATTCTGAACAATTTTCTTGTGGAAAATGTTTCGCCTAAACACAATGTGCCGAAATTTTGAAGATTTCAAAAAATCTTAAAAGGAATGTTTTCATGTGAAACGCTACTCCATCCATAATTACCAAACATCAGTGTCAAAAATAATTAATTTCAAAAACTCATTAGTTATTCTGCAGGACAAAAAATGGTCAATAATCAAAAGAAAGATGTCTCGTTTGTTTGCGAGATGGGGGCCAATAAAAAATCCAAAGTTAATTGCGTCGTTAACTAAAATCGTTAAGAAAATTTTACGGTTTTTCTTTTTCTCTATTTTTTAAGAGAAACTTTCTTTAGGAATTTTTGAAAACTAAAACCATGTCATCTAACCACACTGATAAAAGCCACCTCGTCTCCCCATACCATTAGCTTTCARCCAAATTATCTCGGTTCCTATAGCAGATATTGAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTGACAGTAGTTTGCCTACTCTTTACGTTTATATTTGAGCCAATTTATCTCGGTTCCTATAGCAGATATTAAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTTACCAAACCTTTTGGCTCTCCGTTGATGCATGGCTTCAGTTTGCGCAAACCGTTGGCTACTACAATCGAAAATAGTATGGCGGACGACAGCAAGAAAATCCTCCGAAGCATTTTTTTGGACGAATTACCTATAAAAAAAAATTTACCTATAAAAAAAATTTTACTGGGTGGTTCAAATCAATCGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>321 147 131 129 129 46 25 24 23 18 7</canonical_bands>
                <polymorphic_bands>321 147 136 131 129 46 25 24 23 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTCATCTAACCACACTGATAAA</pcr_primer_p1>
		<pcr_primer_p2>CGCCATACTATTTTCGATTG</pcr_primer_p2>
		<pcr_amplicon_size>452</pcr_amplicon_size>
		<canonical_amplicon>TGTCATCTAACCACACTGATAAAAGCCACCTCGTCTCCCCATACCATTAGCTTTCAGCCAAATTATCTCGGTTCCTATAGCAGATATTGAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTGACAGTAGTTTGCCTACTCTTTACGTTTATATTTGAGCCAATTTATCTCGGTTCCTATAGCAGATATTAAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTTACCAAACCTTTTGGCTCTCCGTTGATGCATGGCTTCAGTTTGCGCAAACCGTTGGCTACTACAATCGAAAATAGTATGGCG</canonical_amplicon>
		<polymorphic_amplicon>TGTCATCTAACCACACTGATAAAAGCCACCTCGTCTCCCCATACCATTAGCTTTCARCCAAATTATCTCGGTTCCTATAGCAGATATTGAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTGACAGTAGTTTGCCTACTCTTTACGTTTATATTTGAGCCAATTTATCTCGGTTCCTATAGCAGATATTAAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTTACCAAACCTTTTGGCTCTCCGTTGATGCATGGCTTCAGTTTGCGCAAACCGTTGGCTACTACAATCGAAAATAGTATGGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24788</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>175234</contig_pos>
        <strand></strand>
        <context>tttcarccaa[A/T]ttatctcggt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CACACTGATAAAAGCCACCTCGTCTCCCCATACCATTAGCTTTCAGCCAA</left_flank>
        <right_flank>TTATCTCGGTTCCTATAGCAGATATTGAAAATTGGTCAACTGATAAAATA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCCGCGAAACTGTAAAGGCGCATATCTCGAGAGCGGTTAAAGATATCAAAGTGCTGTAAACTGCAAAAATGAGAAAAATTTTATTCTGAACAATTTTCTTGTGGAAAATGTTTCGCCTAAACACAATGTGCCGAAATTTTGAAGATTTCAAAAAATCTTAAAAGGAATGTTTTCATGTGAAACGCTACTCCATCCATAATTACCAAACATCAGTGTCAAAAATAATTAATTTCAAAAACTCATTAGTTATTCTGCAGGACAAAAAATGGTCAATAATCAAAAGAAAGATGTCTCGTTTGTTTGCGAGATGGGGGCCAATAAAAAATCCAAAGTTAATTGCGTCGTTAACTAAAATCGTTAAGAAAATTTTACGGTTTTTCTTTTTCTCTATTTTTTAAGAGAAACTTTCTTTAGGAATTTTTGAAAACTAAAACCATGTCATCTAACCACACTGATAAAAGCCACCTCGTCTCCCCATACCATTAGCTTTCAGCCAAATTATCTCGGTTCCTATAGCAGATATTGAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTGACAGTAGTTTGCCTACTCTTTACGTTTATATTTGAGCCAATTTATCTCGGTTCCTATAGCAGATATTAAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTTACCAAACCTTTTGGCTCTCCGTTGATGCATGGCTTCAGTTTGCGCAAACCGTTGGCTACTACAATCGAAAATAGTATGGCGGACGACAGCAAGAAAATCCTCCGAAGCATTTTTTTGGACGAATTACCTATAAAAAAAAATTTACCTATAAAAAAAATTTTACTGGGTGGTTCAAATCAATCGAAAAAAAA</canonical>
            <polymorphic>TCTCCGCGAAACTGTAAAGGCGCATATCTCGAGAGCGGTTAAAGATATCAAAGTGCTGTAAACTGCAAAAATGAGAAAAATTTTATTCTGAACAATTTTCTTGTGGAAAATGTTTCGCCTAAACACAATGTGCCGAAATTTTGAAGATTTCAAAAAATCTTAAAAGGAATGTTTTCATGTGAAACGCTACTCCATCCATAATTACCAAACATCAGTGTCAAAAATAATTAATTTCAAAAACTCATTAGTTATTCTGCAGGACAAAAAATGGTCAATAATCAAAAGAAAGATGTCTCGTTTGTTTGCGAGATGGGGGCCAATAAAAAATCCAAAGTTAATTGCGTCGTTAACTAAAATCGTTAAGAAAATTTTACGGTTTTTCTTTTTCTCTATTTTTTAAGAGAAACTTTCTTTAGGAATTTTTGAAAACTAAAACCATGTCATCTAACCACACTGATAAAAGCCACCTCGTCTCCCCATACCATTAGCTTTCAGCCAAWTTATCTCGGTTCCTATAGCAGATATTGAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTGACAGTAGTTTGCCTACTCTTTACGTTTATATTTGAGCCAATTTATCTCGGTTCCTATAGCAGATATTAAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTTACCAAACCTTTTGGCTCTCCGTTGATGCATGGCTTCAGTTTGCGCAAACCGTTGGCTACTACAATCGAAAATAGTATGGCGGACGACAGCAAGAAAATCCTCCGAAGCATTTTTTTGGACGAATTACCTATAAAAAAAAATTTACCTATAAAAAAAATTTTACTGGGTGGTTCAAATCAATCGAAAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>137 107 81 78 63 54 51 48 48 43 41 41 36 32 31 30 26 17 17 15 4</canonical_bands>
                <polymorphic_bands>137 112 107 78 63 54 51 48 48 43 41 41 36 32 30 26 17 17 15 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACACTGATAAAAGCCACCT</pcr_primer_p1>
		<pcr_primer_p2>CGCCATACTATTTTCGATTG</pcr_primer_p2>
		<pcr_amplicon_size>441</pcr_amplicon_size>
		<canonical_amplicon>CACACTGATAAAAGCCACCTCGTCTCCCCATACCATTAGCTTTCAGCCAAATTATCTCGGTTCCTATAGCAGATATTGAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTGACAGTAGTTTGCCTACTCTTTACGTTTATATTTGAGCCAATTTATCTCGGTTCCTATAGCAGATATTAAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTTACCAAACCTTTTGGCTCTCCGTTGATGCATGGCTTCAGTTTGCGCAAACCGTTGGCTACTACAATCGAAAATAGTATGGCG</canonical_amplicon>
		<polymorphic_amplicon>CACACTGATAAAAGCCACCTCGTCTCCCCATACCATTAGCTTTCAGCCAAWTTATCTCGGTTCCTATAGCAGATATTGAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTGACAGTAGTTTGCCTACTCTTTACGTTTATATTTGAGCCAATTTATCTCGGTTCCTATAGCAGATATTAAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTTACCAAACCTTTTGGCTCTCCGTTGATGCATGGCTTCAGTTTGCGCAAACCGTTGGCTACTACAATCGAAAATAGTATGGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24789</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>175269</contig_pos>
        <strand></strand>
        <context>ttgaaaattg[G/A]tcaactgata</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTAGCTTTCAGCCAAATTATCTCGGTTCCTATAGCAGATATTGAAAATTG</left_flank>
        <right_flank>TCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAAC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGTTAAAGATATCAAAGTGCTGTAAACTGCAAAAATGAGAAAAATTTTATTCTGAACAATTTTCTTGTGGAAAATGTTTCGCCTAAACACAATGTGCCGAAATTTTGAAGATTTCAAAAAATCTTAAAAGGAATGTTTTCATGTGAAACGCTACTCCATCCATAATTACCAAACATCAGTGTCAAAAATAATTAATTTCAAAAACTCATTAGTTATTCTGCAGGACAAAAAATGGTCAATAATCAAAAGAAAGATGTCTCGTTTGTTTGCGAGATGGGGGCCAATAAAAAATCCAAAGTTAATTGCGTCGTTAACTAAAATCGTTAAGAAAATTTTACGGTTTTTCTTTTTCTCTATTTTTTAAGAGAAACTTTCTTTAGGAATTTTTGAAAACTAAAACCATGTCATCTAACCACACTGATAAAAGCCACCTCGTCTCCCCATACCATTAGCTTTCAGCCAAATTATCTCGGTTCCTATAGCAGATATTGAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTGACAGTAGTTTGCCTACTCTTTACGTTTATATTTGAGCCAATTTATCTCGGTTCCTATAGCAGATATTAAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTTACCAAACCTTTTGGCTCTCCGTTGATGCATGGCTTCAGTTTGCGCAAACCGTTGGCTACTACAATCGAAAATAGTATGGCGGACGACAGCAAGAAAATCCTCCGAAGCATTTTTTTGGACGAATTACCTATAAAAAAAAATTTACCTATAAAAAAAATTTTACTGGGTGGTTCAAATCAATCGAAAAAAAATGTCAAGTGGGTTCATCATGTCCGAAAAAAGAAAT</canonical>
            <polymorphic>CGGTTAAAGATATCAAAGTGCTGTAAACTGCAAAAATGAGAAAAATTTTATTCTGAACAATTTTCTTGTGGAAAATGTTTCGCCTAAACACAATGTGCCGAAATTTTGAAGATTTCAAAAAATCTTAAAAGGAATGTTTTCATGTGAAACGCTACTCCATCCATAATTACCAAACATCAGTGTCAAAAATAATTAATTTCAAAAACTCATTAGTTATTCTGCAGGACAAAAAATGGTCAATAATCAAAAGAAAGATGTCTCGTTTGTTTGCGAGATGGGGGCCAATAAAAAATCCAAAGTTAATTGCGTCGTTAACTAAAATCGTTAAGAAAATTTTACGGTTTTTCTTTTTCTCTATTTTTTAAGAGAAACTTTCTTTAGGAATTTTTGAAAACTAAAACCATGTCATCTAACCACACTGATAAAAGCCACCTCGTCTCCCCATACCATTAGCTTTCAGCCAAATTATCTCGGTTCCTATAGCAGATATTGAAAATTGRTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTGACAGTAGTTTGCCTACTCTTTACGTTTATATTTGAGCCAATTTATCTCGGTTCCTATAGCAGATATTAAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTTACCAAACCTTTTGGCTCTCCGTTGATGCATGGCTTCAGTTTGCGCAAACCGTTGGCTACTACAATCGAAAATAGTATGGCGGACGACAGCAAGAAAATCCTCCGAAGCATTTTTTTGGACGAATTACCTATAAAAAAAAATTTACCTATAAAAAAAATTTTACTGGGTGGTTCAAATCAATCGAAAAAAAATGTCAAGTGGGTTCATCATGTCCGAAAAAAGAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>313 278 189 79 51 45 45</canonical_bands>
                <polymorphic_bands>313 278 234 79 51 45</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>288 227 189 79 51 51 45 45 25</canonical_bands>
                <polymorphic_bands>288 234 227 79 51 51 45 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACACTGATAAAAGCCACCT</pcr_primer_p1>
		<pcr_primer_p2>CGCCATACTATTTTCGATTG</pcr_primer_p2>
		<pcr_amplicon_size>441</pcr_amplicon_size>
		<canonical_amplicon>CACACTGATAAAAGCCACCTCGTCTCCCCATACCATTAGCTTTCAGCCAAATTATCTCGGTTCCTATAGCAGATATTGAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTGACAGTAGTTTGCCTACTCTTTACGTTTATATTTGAGCCAATTTATCTCGGTTCCTATAGCAGATATTAAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTTACCAAACCTTTTGGCTCTCCGTTGATGCATGGCTTCAGTTTGCGCAAACCGTTGGCTACTACAATCGAAAATAGTATGGCG</canonical_amplicon>
		<polymorphic_amplicon>CACACTGATAAAAGCCACCTCGTCTCCCCATACCATTAGCTTTCAGCCAAATTATCTCGGTTCCTATAGCAGATATTGAAAATTGRTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTGACAGTAGTTTGCCTACTCTTTACGTTTATATTTGAGCCAATTTATCTCGGTTCCTATAGCAGATATTAAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTTACCAAACCTTTTGGCTCTCCGTTGATGCATGGCTTCAGTTTGCGCAAACCGTTGGCTACTACAATCGAAAATAGTATGGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24790</snp_id>
        <super_contig>c000901072.Contig1</super_contig>
        <contig_pos>175312</contig_pos>
        <strand></strand>
        <context>aataatttat[C/T]agttaaccac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTAT</left_flank>
        <right_flank>AGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTATTCTGAACAATTTTCTTGTGGAAAATGTTTCGCCTAAACACAATGTGCCGAAATTTTGAAGATTTCAAAAAATCTTAAAAGGAATGTTTTCATGTGAAACGCTACTCCATCCATAATTACCAAACATCAGTGTCAAAAATAATTAATTTCAAAAACTCATTAGTTATTCTGCAGGACAAAAAATGGTCAATAATCAAAAGAAAGATGTCTCGTTTGTTTGCGAGATGGGGGCCAATAAAAAATCCAAAGTTAATTGCGTCGTTAACTAAAATCGTTAAGAAAATTTTACGGTTTTTCTTTTTCTCTATTTTTTAAGAGAAACTTTCTTTAGGAATTTTTGAAAACTAAAACCATGTCATCTAACCACACTGATAAAAGCCACCTCGTCTCCCCATACCATTAGCTTTCAGCCAAATTATCTCGGTTCCTATAGCAGATATTGAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTGACAGTAGTTTGCCTACTCTTTACGTTTATATTTGAGCCAATTTATCTCGGTTCCTATAGCAGATATTAAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTTACCAAACCTTTTGGCTCTCCGTTGATGCATGGCTTCAGTTTGCGCAAACCGTTGGCTACTACAATCGAAAATAGTATGGCGGACGACAGCAAGAAAATCCTCCGAAGCATTTTTTTGGACGAATTACCTATAAAAAAAAATTTACCTATAAAAAAAATTTTACTGGGTGGTTCAAATCAATCGAAAAAAAATGTCAAGTGGGTTCATCATGTCCGAAAAAAGAAATTAAGGAAACTTGGAAAAATTAGAAGACGTCGAAAATTCTCTGG</canonical>
            <polymorphic>AATTTTATTCTGAACAATTTTCTTGTGGAAAATGTTTCGCCTAAACACAATGTGCCGAAATTTTGAAGATTTCAAAAAATCTTAAAAGGAATGTTTTCATGTGAAACGCTACTCCATCCATAATTACCAAACATCAGTGTCAAAAATAATTAATTTCAAAAACTCATTAGTTATTCTGCAGGACAAAAAATGGTCAATAATCAAAAGAAAGATGTCTCGTTTGTTTGCGAGATGGGGGCCAATAAAAAATCCAAAGTTAATTGCGTCGTTAACTAAAATCGTTAAGAAAATTTTACGGTTTTTCTTTTTCTCTATTTTTTAAGAGAAACTTTCTTTAGGAATTTTTGAAAACTAAAACCATGTCATCTAACCACACTGATAAAAGCCACCTCGTCTCCCCATACCATTAGCTTTCAGCCAAATTATCTCGGTTCCTATAGCAGATATTGAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATYAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTGACAGTAGTTTGCCTACTCTTTACGTTTATATTTGAGCCAATTTATCTCGGTTCCTATAGCAGATATTAAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTTACCAAACCTTTTGGCTCTCCGTTGATGCATGGCTTCAGTTTGCGCAAACCGTTGGCTACTACAATCGAAAATAGTATGGCGGACGACAGCAAGAAAATCCTCCGAAGCATTTTTTTGGACGAATTACCTATAAAAAAAAATTTACCTATAAAAAAAATTTTACTGGGTGGTTCAAATCAATCGAAAAAAAATGTCAAGTGGGTTCATCATGTCCGAAAAAAGAAATTAAGGAAACTTGGAAAAATTAGAAGACGTCGAAAATTCTCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACACTGATAAAAGCCACCT</pcr_primer_p1>
		<pcr_primer_p2>CGCCATACTATTTTCGATTG</pcr_primer_p2>
		<pcr_amplicon_size>441</pcr_amplicon_size>
		<canonical_amplicon>CACACTGATAAAAGCCACCTCGTCTCCCCATACCATTAGCTTTCAGCCAAATTATCTCGGTTCCTATAGCAGATATTGAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTGACAGTAGTTTGCCTACTCTTTACGTTTATATTTGAGCCAATTTATCTCGGTTCCTATAGCAGATATTAAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTTACCAAACCTTTTGGCTCTCCGTTGATGCATGGCTTCAGTTTGCGCAAACCGTTGGCTACTACAATCGAAAATAGTATGGCG</canonical_amplicon>
		<polymorphic_amplicon>CACACTGATAAAAGCCACCTCGTCTCCCCATACCATTAGCTTTCAGCCAAATTATCTCGGTTCCTATAGCAGATATTGAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATYAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTGACAGTAGTTTGCCTACTCTTTACGTTTATATTTGAGCCAATTTATCTCGGTTCCTATAGCAGATATTAAAAATTGGTCAACTGATAAAATATTGGTGATATTATGATAAATAATTTATCAGTTAACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATTGGCTCAAAGTTTACCAAACCTTTTGGCTCTCCGTTGATGCATGGCTTCAGTTTGCGCAAACCGTTGGCTACTACAATCGAAAATAGTATGGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24791</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>242211</contig_pos>
        <strand></strand>
        <context>ttccttattc[C/G]ttmttcctga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTC</left_flank>
        <right_flank>TTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTC</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATGCGCATTCTCGAAACAAAGAAGTTCACATTCATCATAAATCGAGTTTTTGAGTTTGAACACTTTTCCGTTGATGTTCACGCAAAAGCGATAATTGAGCGATTTGACTGTTCCCAGAATAAAGTTAATGTCATCAGTTGTTATGTTCAGAGTGTCAGCTCTCTCTTTTGGTACAATCTCAACACACTTGAATTTCTTCACATATTTCCACAGAAACCAATTCGTCAGATTTTTTTATAGTTTGATTGATTGTGACGTATGTTCTATCAATTTTGAATACGCTCATTAAAGGGTTGGTGACCAATTCCTTGCAATCTACAGCTTCATGGCCAACGAGATCAAAATTTTTGTAGAGGTACGTAAATATTCCCGCTGGGTTCACAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAAC</canonical>
            <polymorphic>CAATGCGCATTCTCGAAACAAAGAAGTTCACATTCATCATAAATCGAGTTTTTGAGTTTGAACACTTTTCCGTTGATGTTCACGCAAAAGCGATAATTGAGCGATTTGACTGTTCCCAGAATAAAGTTAATGTCATCAGTTGTTATGTTCAGAGTGTCAGCTCTCTCTTTTGGTACAATCTCAACACACTTGAATTTCTTCACATATTTCCACAGAAACCAATTCGTCAGATTTTTTTATAGTTTGATTGATTGTGACGTATGTTCTATCAATTTTGAATACGCTCATTAAAGGGTTGGTGACCAATTCCTTGCAATCTACAGCTTCATGGCCAACGAGATCAAAATTTTTGTAGAGGTACGTAAATATTCCCGCTGGGTTCACAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCSTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCCTTGCAATCTACAGC</pcr_primer_p1>
		<pcr_primer_p2>TCCCAGTTTTGAGATAGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>AATTCCTTGCAATCTACAGCTTCATGGCCAACGAGATCAAAATTTTTGTAGAGGTACGTAAATATTCCCGCTGGGTTCACAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCSTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGA</canonical_amplicon>
		<polymorphic_amplicon>AATTCCTTGCAATCTACAGCTTCATGGCCAACGAGATCAAAATTTTTGTAGAGGTACGTAAATATTCCCGCTGGGTTCACAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCSTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24792</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>242214</contig_pos>
        <strand></strand>
        <context>cttattcstt[A/C]ttcctgattt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTT</left_flank>
        <right_flank>TTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCGCATTCTCGAAACAAAGAAGTTCACATTCATCATAAATCGAGTTTTTGAGTTTGAACACTTTTCCGTTGATGTTCACGCAAAAGCGATAATTGAGCGATTTGACTGTTCCCAGAATAAAGTTAATGTCATCAGTTGTTATGTTCAGAGTGTCAGCTCTCTCTTTTGGTACAATCTCAACACACTTGAATTTCTTCACATATTTCCACAGAAACCAATTCGTCAGATTTTTTTATAGTTTGATTGATTGTGACGTATGTTCTATCAATTTTGAATACGCTCATTAAAGGGTTGGTGACCAATTCCTTGCAATCTACAGCTTCATGGCCAACGAGATCAAAATTTTTGTAGAGGTACGTAAATATTCCCGCTGGGTTCACAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGG</canonical>
            <polymorphic>TGCGCATTCTCGAAACAAAGAAGTTCACATTCATCATAAATCGAGTTTTTGAGTTTGAACACTTTTCCGTTGATGTTCACGCAAAAGCGATAATTGAGCGATTTGACTGTTCCCAGAATAAAGTTAATGTCATCAGTTGTTATGTTCAGAGTGTCAGCTCTCTCTTTTGGTACAATCTCAACACACTTGAATTTCTTCACATATTTCCACAGAAACCAATTCGTCAGATTTTTTTATAGTTTGATTGATTGTGACGTATGTTCTATCAATTTTGAATACGCTCATTAAAGGGTTGGTGACCAATTCCTTGCAATCTACAGCTTCATGGCCAACGAGATCAAAATTTTTGTAGAGGTACGTAAATATTCCCGCTGGGTTCACAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTMTTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCCTTGCAATCTACAGC</pcr_primer_p1>
		<pcr_primer_p2>TCCCAGTTTTGAGATAGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>AATTCCTTGCAATCTACAGCTTCATGGCCAACGAGATCAAAATTTTTGTAGAGGTACGTAAATATTCCCGCTGGGTTCACAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTMTTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGA</canonical_amplicon>
		<polymorphic_amplicon>AATTCCTTGCAATCTACAGCTTCATGGCCAACGAGATCAAAATTTTTGTAGAGGTACGTAAATATTCCCGCTGGGTTCACAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTMTTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24793</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>242310</contig_pos>
        <strand></strand>
        <context>TGCCGCGTAA[A/C]ATTTTGYTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAA</left_flank>
        <right_flank>ATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTT</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCGATTTGACTGTTCCCAGAATAAAGTTAATGTCATCAGTTGTTATGTTCAGAGTGTCAGCTCTCTCTTTTGGTACAATCTCAACACACTTGAATTTCTTCACATATTTCCACAGAAACCAATTCGTCAGATTTTTTTATAGTTTGATTGATTGTGACGTATGTTCTATCAATTTTGAATACGCTCATTAAAGGGTTGGTGACCAATTCCTTGCAATCTACAGCTTCATGGCCAACGAGATCAAAATTTTTGTAGAGGTACGTAAATATTCCCGCTGGGTTCACAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGTCGAGCATCATCTTTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGGCAAATTAACTTTTTGTTCACTCAAT</canonical>
            <polymorphic>AGCGATTTGACTGTTCCCAGAATAAAGTTAATGTCATCAGTTGTTATGTTCAGAGTGTCAGCTCTCTCTTTTGGTACAATCTCAACACACTTGAATTTCTTCACATATTTCCACAGAAACCAATTCGTCAGATTTTTTTATAGTTTGATTGATTGTGACGTATGTTCTATCAATTTTGAATACGCTCATTAAAGGGTTGGTGACCAATTCCTTGCAATCTACAGCTTCATGGCCAACGAGATCAAAATTTTTGTAGAGGTACGTAAATATTCCCGCTGGGTTCACAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAMATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGTCGAGCATCATCTTTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGGCAAATTAACTTTTTGTTCACTCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>190 152 136 135 135 93 55 40 28 28 8</canonical_bands>
                <polymorphic_bands>190 152 136 135 135 93 68 55 28 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>115 93 89 82 78 61 55 53 50 40 40 35 34 28 28 24 23 22 15 14 13 8</canonical_bands>
                <polymorphic_bands>115 93 89 82 78 61 55 53 53 50 40 35 34 28 28 24 23 22 15 14 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTATCTCAAAACTGGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>GGATACACTCGTTTTCTGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCC</canonical_amplicon>
		<polymorphic_amplicon>TTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAMATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24794</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>242317</contig_pos>
        <strand></strand>
        <context>TAAMATTTTG[C/T]TCARCGGAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTG</left_flank>
        <right_flank>TCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAAT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACTGTTCCCAGAATAAAGTTAATGTCATCAGTTGTTATGTTCAGAGTGTCAGCTCTCTCTTTTGGTACAATCTCAACACACTTGAATTTCTTCACATATTTCCACAGAAACCAATTCGTCAGATTTTTTTATAGTTTGATTGATTGTGACGTATGTTCTATCAATTTTGAATACGCTCATTAAAGGGTTGGTGACCAATTCCTTGCAATCTACAGCTTCATGGCCAACGAGATCAAAATTTTTGTAGAGGTACGTAAATATTCCCGCTGGGTTCACAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGTCGAGCATCATCTTTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGGCAAATTAACTTTTTGTTCACTCAATTTGAAAA</canonical>
            <polymorphic>TGACTGTTCCCAGAATAAAGTTAATGTCATCAGTTGTTATGTTCAGAGTGTCAGCTCTCTCTTTTGGTACAATCTCAACACACTTGAATTTCTTCACATATTTCCACAGAAACCAATTCGTCAGATTTTTTTATAGTTTGATTGATTGTGACGTATGTTCTATCAATTTTGAATACGCTCATTAAAGGGTTGGTGACCAATTCCTTGCAATCTACAGCTTCATGGCCAACGAGATCAAAATTTTTGTAGAGGTACGTAAATATTCCCGCTGGGTTCACAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGYTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGTCGAGCATCATCTTTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGGCAAATTAACTTTTTGTTCACTCAATTTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATCTCAAAACTGGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATACACTCGTTTTCTGTTCTGAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTAT</canonical_amplicon>
		<polymorphic_amplicon>TCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGYTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24795</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>242321</contig_pos>
        <strand></strand>
        <context>ATTTTGYTCA[A/G]CGGAGCAYYT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCA</left_flank>
        <right_flank>CGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTCCCAGAATAAAGTTAATGTCATCAGTTGTTATGTTCAGAGTGTCAGCTCTCTCTTTTGGTACAATCTCAACACACTTGAATTTCTTCACATATTTCCACAGAAACCAATTCGTCAGATTTTTTTATAGTTTGATTGATTGTGACGTATGTTCTATCAATTTTGAATACGCTCATTAAAGGGTTGGTGACCAATTCCTTGCAATCTACAGCTTCATGGCCAACGAGATCAAAATTTTTGTAGAGGTACGTAAATATTCCCGCTGGGTTCACAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGTCGAGCATCATCTTTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGGCAAATTAACTTTTTGTTCACTCAATTTGAAAAATTA</canonical>
            <polymorphic>TGTTCCCAGAATAAAGTTAATGTCATCAGTTGTTATGTTCAGAGTGTCAGCTCTCTCTTTTGGTACAATCTCAACACACTTGAATTTCTTCACATATTTCCACAGAAACCAATTCGTCAGATTTTTTTATAGTTTGATTGATTGTGACGTATGTTCTATCAATTTTGAATACGCTCATTAAAGGGTTGGTGACCAATTCCTTGCAATCTACAGCTTCATGGCCAACGAGATCAAAATTTTTGTAGAGGTACGTAAATATTCCCGCTGGGTTCACAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCARCGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGTCGAGCATCATCTTTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGGCAAATTAACTTTTTGTTCACTCAATTTGAAAAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATCTCAAAACTGGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATACACTCGTTTTCTGTTCTGAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTAT</canonical_amplicon>
		<polymorphic_amplicon>TCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCARCGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24796</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>242329</contig_pos>
        <strand></strand>
        <context>CARCGGAGCA[C/T]YTTTGCACCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCA</left_flank>
        <right_flank>CTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATAAAGTTAATGTCATCAGTTGTTATGTTCAGAGTGTCAGCTCTCTCTTTTGGTACAATCTCAACACACTTGAATTTCTTCACATATTTCCACAGAAACCAATTCGTCAGATTTTTTTATAGTTTGATTGATTGTGACGTATGTTCTATCAATTTTGAATACGCTCATTAAAGGGTTGGTGACCAATTCCTTGCAATCTACAGCTTCATGGCCAACGAGATCAAAATTTTTGTAGAGGTACGTAAATATTCCCGCTGGGTTCACAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGTCGAGCATCATCTTTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGGCAAATTAACTTTTTGTTCACTCAATTTGAAAAATTATGGCCTGG</canonical>
            <polymorphic>GAATAAAGTTAATGTCATCAGTTGTTATGTTCAGAGTGTCAGCTCTCTCTTTTGGTACAATCTCAACACACTTGAATTTCTTCACATATTTCCACAGAAACCAATTCGTCAGATTTTTTTATAGTTTGATTGATTGTGACGTATGTTCTATCAATTTTGAATACGCTCATTAAAGGGTTGGTGACCAATTCCTTGCAATCTACAGCTTCATGGCCAACGAGATCAAAATTTTTGTAGAGGTACGTAAATATTCCCGCTGGGTTCACAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCAYCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGTCGAGCATCATCTTTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGGCAAATTAACTTTTTGTTCACTCAATTTGAAAAATTATGGCCTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>179 146 129 107 82 60 55 45 44 38 30 26 25 14 10 8 2</canonical_bands>
                <polymorphic_bands>187 146 129 107 82 60 55 45 44 38 30 26 25 14 10 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTATCTCAAAACTGGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATACACTCGTTTTCTGTTCTGAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTAT</canonical_amplicon>
		<polymorphic_amplicon>TCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCAYCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24797</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>242330</contig_pos>
        <strand></strand>
        <context>ARCGGAGCAY[C/T]TTTGCACCGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCAC</left_flank>
        <right_flank>TTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAAAGTTAATGTCATCAGTTGTTATGTTCAGAGTGTCAGCTCTCTCTTTTGGTACAATCTCAACACACTTGAATTTCTTCACATATTTCCACAGAAACCAATTCGTCAGATTTTTTTATAGTTTGATTGATTGTGACGTATGTTCTATCAATTTTGAATACGCTCATTAAAGGGTTGGTGACCAATTCCTTGCAATCTACAGCTTCATGGCCAACGAGATCAAAATTTTTGTAGAGGTACGTAAATATTCCCGCTGGGTTCACAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGTCGAGCATCATCTTTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGGCAAATTAACTTTTTGTTCACTCAATTTGAAAAATTATGGCCTGGA</canonical>
            <polymorphic>AATAAAGTTAATGTCATCAGTTGTTATGTTCAGAGTGTCAGCTCTCTCTTTTGGTACAATCTCAACACACTTGAATTTCTTCACATATTTCCACAGAAACCAATTCGTCAGATTTTTTTATAGTTTGATTGATTGTGACGTATGTTCTATCAATTTTGAATACGCTCATTAAAGGGTTGGTGACCAATTCCTTGCAATCTACAGCTTCATGGCCAACGAGATCAAAATTTTTGTAGAGGTACGTAAATATTCCCGCTGGGTTCACAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACYTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGTCGAGCATCATCTTTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGGCAAATTAACTTTTTGTTCACTCAATTTGAAAAATTATGGCCTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATCTCAAAACTGGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATACACTCGTTTTCTGTTCTGAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTAT</canonical_amplicon>
		<polymorphic_amplicon>TCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACYTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24798</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>242388</contig_pos>
        <strand></strand>
        <context>TTATGCGTTT[T/A]TCTCAGTGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTT</left_flank>
        <right_flank>TCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTCAACACACTTGAATTTCTTCACATATTTCCACAGAAACCAATTCGTCAGATTTTTTTATAGTTTGATTGATTGTGACGTATGTTCTATCAATTTTGAATACGCTCATTAAAGGGTTGGTGACCAATTCCTTGCAATCTACAGCTTCATGGCCAACGAGATCAAAATTTTTGTAGAGGTACGTAAATATTCCCGCTGGGTTCACAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGTCGAGCATCATCTTTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGGCAAATTAACTTTTTGTTCACTCAATTTGAAAAATTATGGCCTGGACAACTGATAATTCACAATTATGATTTTGTTTTTTAGTTTTTTAATTCTAGTTTGAGAG</canonical>
            <polymorphic>ATCTCAACACACTTGAATTTCTTCACATATTTCCACAGAAACCAATTCGTCAGATTTTTTTATAGTTTGATTGATTGTGACGTATGTTCTATCAATTTTGAATACGCTCATTAAAGGGTTGGTGACCAATTCCTTGCAATCTACAGCTTCATGGCCAACGAGATCAAAATTTTTGTAGAGGTACGTAAATATTCCCGCTGGGTTCACAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTWTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGTCGAGCATCATCTTTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGGCAAATTAACTTTTTGTTCACTCAATTTGAAAAATTATGGCCTGGACAACTGATAATTCACAATTATGATTTTGTTTTTTAGTTTTTTAATTCTAGTTTGAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATCTCAAAACTGGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATACACTCGTTTTCTGTTCTGAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTAT</canonical_amplicon>
		<polymorphic_amplicon>TCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTWTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24799</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>242415</contig_pos>
        <strand></strand>
        <context>GAAATAAATT[A/T]GGTTTTTACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATT</left_flank>
        <right_flank>GGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGA</right_flank>
        <qual_score>46</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTCCACAGAAACCAATTCGTCAGATTTTTTTATAGTTTGATTGATTGTGACGTATGTTCTATCAATTTTGAATACGCTCATTAAAGGGTTGGTGACCAATTCCTTGCAATCTACAGCTTCATGGCCAACGAGATCAAAATTTTTGTAGAGGTACGTAAATATTCCCGCTGGGTTCACAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGTCGAGCATCATCTTTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGGCAAATTAACTTTTTGTTCACTCAATTTGAAAAATTATGGCCTGGACAACTGATAATTCACAATTATGATTTTGTTTTTTAGTTTTTTAATTCTAGTTTGAGAGTTCCCTCTTCATTTTTCTTGTTTGTGT</canonical>
            <polymorphic>TATTTCCACAGAAACCAATTCGTCAGATTTTTTTATAGTTTGATTGATTGTGACGTATGTTCTATCAATTTTGAATACGCTCATTAAAGGGTTGGTGACCAATTCCTTGCAATCTACAGCTTCATGGCCAACGAGATCAAAATTTTTGTAGAGGTACGTAAATATTCCCGCTGGGTTCACAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTWGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGTCGAGCATCATCTTTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGGCAAATTAACTTTTTGTTCACTCAATTTGAAAAATTATGGCCTGGACAACTGATAATTCACAATTATGATTTTGTTTTTTAGTTTTTTAATTCTAGTTTGAGAGTTCCCTCTTCATTTTTCTTGTTTGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATCTCAAAACTGGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATACACTCGTTTTCTGTTCTGAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTAT</canonical_amplicon>
		<polymorphic_amplicon>TCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTWGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24800</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>242450</contig_pos>
        <strand></strand>
        <context>CAGAAAAAAT[G/T]TCTRAAAAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAAT</left_flank>
        <right_flank>TCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTTTGATTGATTGTGACGTATGTTCTATCAATTTTGAATACGCTCATTAAAGGGTTGGTGACCAATTCCTTGCAATCTACAGCTTCATGGCCAACGAGATCAAAATTTTTGTAGAGGTACGTAAATATTCCCGCTGGGTTCACAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGTCGAGCATCATCTTTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGGCAAATTAACTTTTTGTTCACTCAATTTGAAAAATTATGGCCTGGACAACTGATAATTCACAATTATGATTTTGTTTTTTAGTTTTTTAATTCTAGTTTGAGAGTTCCCTCTTCATTTTTCTTGTTTGTGTCTCGGTTTGTGAGTTCTCTCTTCGTTGTTCGTGTT</canonical>
            <polymorphic>TAGTTTGATTGATTGTGACGTATGTTCTATCAATTTTGAATACGCTCATTAAAGGGTTGGTGACCAATTCCTTGCAATCTACAGCTTCATGGCCAACGAGATCAAAATTTTTGTAGAGGTACGTAAATATTCCCGCTGGGTTCACAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATKTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGTCGAGCATCATCTTTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGGCAAATTAACTTTTTGTTCACTCAATTTGAAAAATTATGGCCTGGACAACTGATAATTCACAATTATGATTTTGTTTTTTAGTTTTTTAATTCTAGTTTGAGAGTTCCCTCTTCATTTTTCTTGTTTGTGTCTCGGTTTGTGAGTTCTCTCTTCGTTGTTCGTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATCTCAAAACTGGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATACACTCGTTTTCTGTTCTGAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTAT</canonical_amplicon>
		<polymorphic_amplicon>TCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATKTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24801</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>242454</contig_pos>
        <strand></strand>
        <context>AAAAATKTCT[A/G]AAAAACGGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCT</left_flank>
        <right_flank>AAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGATTGATTGTGACGTATGTTCTATCAATTTTGAATACGCTCATTAAAGGGTTGGTGACCAATTCCTTGCAATCTACAGCTTCATGGCCAACGAGATCAAAATTTTTGTAGAGGTACGTAAATATTCCCGCTGGGTTCACAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGTCGAGCATCATCTTTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGGCAAATTAACTTTTTGTTCACTCAATTTGAAAAATTATGGCCTGGACAACTGATAATTCACAATTATGATTTTGTTTTTTAGTTTTTTAATTCTAGTTTGAGAGTTCCCTCTTCATTTTTCTTGTTTGTGTCTCGGTTTGTGAGTTCTCTCTTCGTTGTTCGTGTTTTAA</canonical>
            <polymorphic>TTGATTGATTGTGACGTATGTTCTATCAATTTTGAATACGCTCATTAAAGGGTTGGTGACCAATTCCTTGCAATCTACAGCTTCATGGCCAACGAGATCAAAATTTTTGTAGAGGTACGTAAATATTCCCGCTGGGTTCACAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTRAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGTCGAGCATCATCTTTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGGCAAATTAACTTTTTGTTCACTCAATTTGAAAAATTATGGCCTGGACAACTGATAATTCACAATTATGATTTTGTTTTTTAGTTTTTTAATTCTAGTTTGAGAGTTCCCTCTTCATTTTTCTTGTTTGTGTCTCGGTTTGTGAGTTCTCTCTTCGTTGTTCGTGTTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTATCTCAAAACTGGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>GGATACACTCGTTTTCTGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCC</canonical_amplicon>
		<polymorphic_amplicon>TTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTRAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24802</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>242479</contig_pos>
        <strand></strand>
        <context>TTTGACGAAT[G/T]CTTCGTCAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAAT</left_flank>
        <right_flank>CTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAATTTTGAATACGCTCATTAAAGGGTTGGTGACCAATTCCTTGCAATCTACAGCTTCATGGCCAACGAGATCAAAATTTTTGTAGAGGTACGTAAATATTCCCGCTGGGTTCACAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGTCGAGCATCATCTTTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGGCAAATTAACTTTTTGTTCACTCAATTTGAAAAATTATGGCCTGGACAACTGATAATTCACAATTATGATTTTGTTTTTTAGTTTTTTAATTCTAGTTTGAGAGTTCCCTCTTCATTTTTCTTGTTTGTGTCTCGGTTTGTGAGTTCTCTCTTCGTTGTTCGTGTTTTAAAATAAACAGTGTTTTTCAAGACAAA</canonical>
            <polymorphic>TCAATTTTGAATACGCTCATTAAAGGGTTGGTGACCAATTCCTTGCAATCTACAGCTTCATGGCCAACGAGATCAAAATTTTTGTAGAGGTACGTAAATATTCCCGCTGGGTTCACAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATKCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGTCGAGCATCATCTTTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGGCAAATTAACTTTTTGTTCACTCAATTTGAAAAATTATGGCCTGGACAACTGATAATTCACAATTATGATTTTGTTTTTTAGTTTTTTAATTCTAGTTTGAGAGTTCCCTCTTCATTTTTCTTGTTTGTGTCTCGGTTTGTGAGTTCTCTCTTCGTTGTTCGTGTTTTAAAATAAACAGTGTTTTTCAAGACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAAATCTTGGAAAAGTTATG</pcr_primer_p1>
		<pcr_primer_p2>CACGAACAACAGATGAGAATTA</pcr_primer_p2>
		<pcr_amplicon_size>978</pcr_amplicon_size>
		<canonical_amplicon>TGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGA</canonical_amplicon>
		<polymorphic_amplicon>TGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATKCTTCGTCAGAACAGAAAACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24803</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>242547</contig_pos>
        <strand></strand>
        <context>gaaaattccg[C/G]agcagaaatg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCG</left_flank>
        <right_flank>AGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGATCAAAATTTTTGTAGAGGTACGTAAATATTCCCGCTGGGTTCACAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGTCGAGCATCATCTTTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGGCAAATTAACTTTTTGTTCACTCAATTTGAAAAATTATGGCCTGGACAACTGATAATTCACAATTATGATTTTGTTTTTTAGTTTTTTAATTCTAGTTTGAGAGTTCCCTCTTCATTTTTCTTGTTTGTGTCTCGGTTTGTGAGTTCTCTCTTCGTTGTTCGTGTTTTAAAATAAACAGTGTTTTTCAAGACAAAAAGAAACCTTCCTTCGTTCGGAAATTCTTTCCTTCCTTATTCCTTATTCTTTATTCCTTATTCCGGGT</canonical>
            <polymorphic>GAGATCAAAATTTTTGTAGAGGTACGTAAATATTCCCGCTGGGTTCACAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGSAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGTCGAGCATCATCTTTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGGCAAATTAACTTTTTGTTCACTCAATTTGAAAAATTATGGCCTGGACAACTGATAATTCACAATTATGATTTTGTTTTTTAGTTTTTTAATTCTAGTTTGAGAGTTCCCTCTTCATTTTTCTTGTTTGTGTCTCGGTTTGTGAGTTCTCTCTTCGTTGTTCGTGTTTTAAAATAAACAGTGTTTTTCAAGACAAAAAGAAACCTTCCTTCGTTCGGAAATTCTTTCCTTCCTTATTCCTTATTCTTTATTCCTTATTCCGGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 242 219 36</canonical_bands>
                <polymorphic_bands>745 219 36</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>498 257 245</canonical_bands>
                <polymorphic_bands>743 257</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAACAGAAAACGAGTGTATCC</pcr_primer_p1>
		<pcr_primer_p2>AATTACTTTTCATTATTACCGTCAC</pcr_primer_p2>
		<pcr_amplicon_size>835</pcr_amplicon_size>
		<canonical_amplicon>AGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTA</canonical_amplicon>
		<polymorphic_amplicon>AGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGSAGCAGAAATGGCTAGATCTGGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24804</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>242611</contig_pos>
        <strand></strand>
        <context>agctttctcg[G/A]tcgkatytgg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCG</left_flank>
        <right_flank>TCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGTCGAGCATCATCTTTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGGCAAATTAACTTTTTGTTCACTCAATTTGAAAAATTATGGCCTGGACAACTGATAATTCACAATTATGATTTTGTTTTTTAGTTTTTTAATTCTAGTTTGAGAGTTCCCTCTTCATTTTTCTTGTTTGTGTCTCGGTTTGTGAGTTCTCTCTTCGTTGTTCGTGTTTTAAAATAAACAGTGTTTTTCAAGACAAAAAGAAACCTTCCTTCGTTCGGAAATTCTTTCCTTCCTTATTCCTTATTCTTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCGGATTTTAAATTTTTCATTCCTTATTCCT</canonical>
            <polymorphic>ATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGRTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGTCGAGCATCATCTTTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGGCAAATTAACTTTTTGTTCACTCAATTTGAAAAATTATGGCCTGGACAACTGATAATTCACAATTATGATTTTGTTTTTTAGTTTTTTAATTCTAGTTTGAGAGTTCCCTCTTCATTTTTCTTGTTTGTGTCTCGGTTTGTGAGTTCTCTCTTCGTTGTTCGTGTTTTAAAATAAACAGTGTTTTTCAAGACAAAAAGAAACCTTCCTTCGTTCGGAAATTCTTTCCTTCCTTATTCCTTATTCTTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCGGATTTTAAATTTTTCATTCCTTATTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAACAGAAAACGAGTGTATCC</pcr_primer_p1>
		<pcr_primer_p2>AATTACTTTTCATTATTACCGTCAC</pcr_primer_p2>
		<pcr_amplicon_size>835</pcr_amplicon_size>
		<canonical_amplicon>AGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCC</canonical_amplicon>
		<polymorphic_amplicon>AGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGRTCGGATCTGGTCAGAAAATCACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24805</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>242615</contig_pos>
        <strand></strand>
        <context>ttctcgrtcg[G/T]atytggtcag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCG</left_flank>
        <right_flank>ATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGTCGAGCATCATCTTTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGGCAAATTAACTTTTTGTTCACTCAATTTGAAAAATTATGGCCTGGACAACTGATAATTCACAATTATGATTTTGTTTTTTAGTTTTTTAATTCTAGTTTGAGAGTTCCCTCTTCATTTTTCTTGTTTGTGTCTCGGTTTGTGAGTTCTCTCTTCGTTGTTCGTGTTTTAAAATAAACAGTGTTTTTCAAGACAAAAAGAAACCTTCCTTCGTTCGGAAATTCTTTCCTTCCTTATTCCTTATTCTTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCGGATTTTAAATTTTTCATTCCTTATTCCTTATT</canonical>
            <polymorphic>CTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGKATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGTCGAGCATCATCTTTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGGCAAATTAACTTTTTGTTCACTCAATTTGAAAAATTATGGCCTGGACAACTGATAATTCACAATTATGATTTTGTTTTTTAGTTTTTTAATTCTAGTTTGAGAGTTCCCTCTTCATTTTTCTTGTTTGTGTCTCGGTTTGTGAGTTCTCTCTTCGTTGTTCGTGTTTTAAAATAAACAGTGTTTTTCAAGACAAAAAGAAACCTTCCTTCGTTCGGAAATTCTTTCCTTCCTTATTCCTTATTCTTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCGGATTTTAAATTTTTCATTCCTTATTCCTTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>480 446 53 21</canonical_bands>
                <polymorphic_bands>480 446 74</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>501 446 53</canonical_bands>
                <polymorphic_bands>554 446</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>331 326 116 95 46 32 21 17 10 6</canonical_bands>
                <polymorphic_bands>331 326 116 95 46 42 21 17 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAACAGAAAACGAGTGTATCC</pcr_primer_p1>
		<pcr_primer_p2>AATTACTTTTCATTATTACCGTCAC</pcr_primer_p2>
		<pcr_amplicon_size>835</pcr_amplicon_size>
		<canonical_amplicon>AGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATC</canonical_amplicon>
		<polymorphic_amplicon>AGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGKATCTGGTCAGAAAATCACCCGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24806</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>242618</contig_pos>
        <strand></strand>
        <context>tcgrtcgkat[C/T]tggtcagaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGAT</left_flank>
        <right_flank>TGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGTCGAGCATCATCTTTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGGCAAATTAACTTTTTGTTCACTCAATTTGAAAAATTATGGCCTGGACAACTGATAATTCACAATTATGATTTTGTTTTTTAGTTTTTTAATTCTAGTTTGAGAGTTCCCTCTTCATTTTTCTTGTTTGTGTCTCGGTTTGTGAGTTCTCTCTTCGTTGTTCGTGTTTTAAAATAAACAGTGTTTTTCAAGACAAAAAGAAACCTTCCTTCGTTCGGAAATTCTTTCCTTCCTTATTCCTTATTCTTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCGGATTTTAAATTTTTCATTCCTTATTCCTTATTCCT</canonical>
            <polymorphic>ATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATYTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGTCGAGCATCATCTTTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGGCAAATTAACTTTTTGTTCACTCAATTTGAAAAATTATGGCCTGGACAACTGATAATTCACAATTATGATTTTGTTTTTTAGTTTTTTAATTCTAGTTTGAGAGTTCCCTCTTCATTTTTCTTGTTTGTGTCTCGGTTTGTGAGTTCTCTCTTCGTTGTTCGTGTTTTAAAATAAACAGTGTTTTTCAAGACAAAAAGAAACCTTCCTTCGTTCGGAAATTCTTTCCTTCCTTATTCCTTATTCTTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCGGATTTTAAATTTTTCATTCCTTATTCCTTATTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>483 443 53 21</canonical_bands>
                <polymorphic_bands>483 443 74</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>504 443 53</canonical_bands>
                <polymorphic_bands>557 443</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAACAGAAAACGAGTGTATCC</pcr_primer_p1>
		<pcr_primer_p2>AATTACTTTTCATTATTACCGTCAC</pcr_primer_p2>
		<pcr_amplicon_size>835</pcr_amplicon_size>
		<canonical_amplicon>AGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGG</canonical_amplicon>
		<polymorphic_amplicon>AGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATYTGGTCAGAAAATCACCCGATCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24807</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>242635</contig_pos>
        <strand></strand>
        <context>gaaaatcacc[C/G]gatctggtcg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACC</left_flank>
        <right_flank>GATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGTCGAGCATCATCTTTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGGCAAATTAACTTTTTGTTCACTCAATTTGAAAAATTATGGCCTGGACAACTGATAATTCACAATTATGATTTTGTTTTTTAGTTTTTTAATTCTAGTTTGAGAGTTCCCTCTTCATTTTTCTTGTTTGTGTCTCGGTTTGTGAGTTCTCTCTTCGTTGTTCGTGTTTTAAAATAAACAGTGTTTTTCAAGACAAAAAGAAACCTTCCTTCGTTCGGAAATTCTTTCCTTCCTTATTCCTTATTCTTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCGGATTTTAAATTTTTCATTCCTTATTCCTTATTCCTTATTCCGGATTTTAAAA</canonical>
            <polymorphic>CCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCSGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGTCGAGCATCATCTTTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGGCAAATTAACTTTTTGTTCACTCAATTTGAAAAATTATGGCCTGGACAACTGATAATTCACAATTATGATTTTGTTTTTTAGTTTTTTAATTCTAGTTTGAGAGTTCCCTCTTCATTTTTCTTGTTTGTGTCTCGGTTTGTGAGTTCTCTCTTCGTTGTTCGTGTTTTAAAATAAACAGTGTTTTTCAAGACAAAAAGAAACCTTCCTTCGTTCGGAAATTCTTTCCTTCCTTATTCCTTATTCTTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCGGATTTTAAATTTTTCATTCCTTATTCCTTATTCCTTATTCCGGATTTTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAACAGAAAACGAGTGTATCC</pcr_primer_p1>
		<pcr_primer_p2>AATTACTTTTCATTATTACCGTCAC</pcr_primer_p2>
		<pcr_amplicon_size>835</pcr_amplicon_size>
		<canonical_amplicon>AGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTT</canonical_amplicon>
		<polymorphic_amplicon>AGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCSGATCTGGTCGGAAAATAAAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24808</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>242670</contig_pos>
        <strand></strand>
        <context>tccgaatctg[A/G]ttggaatttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTG</left_flank>
        <right_flank>TTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGTCGAGCATCATCTTTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGGCAAATTAACTTTTTGTTCACTCAATTTGAAAAATTATGGCCTGGACAACTGATAATTCACAATTATGATTTTGTTTTTTAGTTTTTTAATTCTAGTTTGAGAGTTCCCTCTTCATTTTTCTTGTTTGTGTCTCGGTTTGTGAGTTCTCTCTTCGTTGTTCGTGTTTTAAAATAAACAGTGTTTTTCAAGACAAAAAGAAACCTTCCTTCGTTCGGAAATTCTTTCCTTCCTTATTCCTTATTCTTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCGGATTTTAAATTTTTCATTCCTTATTCCTTATTCCTTATTCCGGATTTTAAAATTGTTATTCTTTAATCCTTATTCCTTATTCCTGAT</canonical>
            <polymorphic>TATTCCTTATTCCTGATTTTAAAATTGTTATTCCTTATTCCTTATTCCTGATTTTTTTTGTTATTCCTCTTCAAAAATTTAAAAATTTTTCTATCTCAAAACTGGGAAAAAAATTTGAACGCTCTAAATTGCCGCGTAAAATTTTGCTCAACGGAGCACCTTTGCACCGTTTTTCGTAAAATTTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTCAGTGTTTTTTTCGAAATAAATTAGGTTTTTACAATTACTAAATACTTCAGAAAAAATGTCTAAAAAACGGAGAAAGTTTGACGAATGCTTCGTCAGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGRTTGGAATTTTACTCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGTCGAGCATCATCTTTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGGCAAATTAACTTTTTGTTCACTCAATTTGAAAAATTATGGCCTGGACAACTGATAATTCACAATTATGATTTTGTTTTTTAGTTTTTTAATTCTAGTTTGAGAGTTCCCTCTTCATTTTTCTTGTTTGTGTCTCGGTTTGTGAGTTCTCTCTTCGTTGTTCGTGTTTTAAAATAAACAGTGTTTTTCAAGACAAAAAGAAACCTTCCTTCGTTCGGAAATTCTTTCCTTCCTTATTCCTTATTCTTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCGGATTTTAAATTTTTCATTCCTTATTCCTTATTCCTTATTCCGGATTTTAAAATTGTTATTCTTTAATCCTTATTCCTTATTCCTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>331 271 171 95 46 32 21 17 10 6</canonical_bands>
                <polymorphic_bands>337 271 171 95 46 32 21 17 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAACAGAAAACGAGTGTATCC</pcr_primer_p1>
		<pcr_primer_p2>AATTACTTTTCATTATTACCGTCAC</pcr_primer_p2>
		<pcr_amplicon_size>835</pcr_amplicon_size>
		<canonical_amplicon>AGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGATTGGAATTTTACTCGAATCTGGTT</canonical_amplicon>
		<polymorphic_amplicon>AGAACAGAAAACGAGTGTATCCCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGCAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGAAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCCGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGRTTGGAATTTTACTCGAATCTGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24809</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>292204</contig_pos>
        <strand>+</strand>
        <context>TGATGGTGAT[A/G]ATGMTGAAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATTCGTAAAACCAACTGATGTAAGTGAATACTCTGTGTTGATGGTGAT</left_flank>
        <right_flank>ATGCTGAAACGTAATGTATTCTAGCTACAATTTGTATTTGAAATGTTTTT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCACTGGTTATCCTCTGTCGAAATGAAGATGTCAAAAGTAGCTGTTTTTTTCAGTTTCAAAAAAAAAAAAGAAATCGGTGAGTGTGTGTGCGATAGCCTCGCCGAACCAATGCATCTCATTTCCTGCTCAACCAAGAAATTCATTTCAGAATGAGGCTCTTCTCCTACCCATCTCAACCATTCGTTTTCCATTCGTCCTCCCCTTTTTTTCCCATTCTTCAAATTGGCCCATAATTTCCGGATGGCTCTTTTTCTTCTCGTCACAAAAACCACGGCCCGTCTCATTTTCTGCAGATGTCCTAAATGAAATGAATGTGATGCGTTTTACGTTATTTTTGATGCGCCACGCCTATTCGCCATTCGGCTCTACCTCCTGTGCATTTGGCATCAGATTTGAAATGCGTTGCTCTTTCGCAACCGTCAGCACAGAGTGCTTCGACTTACACAGAATTCGTAAAACCAACTGATGTAAGTGAATACTCTGTGTTGATGGTGATGATGCTGAAACGTAATGTATTCTAGCTACAATTTGTATTTGAAATGTTTTTTTTTGTATTTCTATGACCTAAGAAATATATATGCACTTTCAAAAGGACAGATGACGTCTCTTTCTAGAAGATCTAAAAATGCACTTTCAAAATAAGTGAATTCTGGAAAACGAAGGAGGGAAAATAGTTTCTTGTCTCTCTTGTAATCTGCTGAATGATAGAAATTTCGAAACAAAGGAGCAATCGGAAAATGAAGTGTCTCTGAACATTTCTTGAGGTGACAACGCCTCATTTCTTGAAATGTGTAATTAAAAATTCTTAGATTTTGTGAGAAACAATCTTTGGCAGATAGTTCATTTGTTGTCATTTCTGTTCTAAAATAAATTTCAAAAAATTTTTCGTGTTTCTTCTATTATTTTATCATGTATTTCTTCAAATTTCCCCGAATTCTAACAAAGAATACGCAATATTTCTTTTTTTAAAGCTGAAAACAAGATTTTCGCATTTCTG</canonical>
            <polymorphic>TGTCACTGGTTATCCTCTGTCGAAATGAAGATGTCAAAAGTAGCTGTTTTTTTCAGTTTCAAAAAAAAAAAAGAAATCGGTGAGTGTGTGTGCGATAGCCTCGCCGAACCAATGCATCTCATTTCCTGCTCAACCAAGAAATTCATTTCAGAATGAGGCTCTTCTCCTACCCATCTCAACCATTCGTTTTCCATTCGTCCTCCCCTTTTTTTCCCATTCTTCAAATTGGCCCATAATTTCCGGATGGCTCTTTTTCTTCTCGTCACAAAAACCACGGCCCGTCTCATTTTCTGCAGATGTCCTAAATGAAATGAATGTGATGCGTTTTACGTTATTTTTGATGCGCCACGCCTATTCGCCATTCGGCTCTACCTCCTGTGCATTTGGCATCAGATTTGAAATGCGTTGCTCTTTCGCAACCGTCAGCACAGAGTGCTTCGACTTACACAGAATTCGTAAAACCAACTGATGTAAGTGAATACTCTGTGTTGATGGTGATRATGCTGAAACGTAATGTATTCTAGCTACAATTTGTATTTGAAATGTTTTTTTTTGTATTTCTATGACCTAAGAAATATATATGCACTTTCAAAAGGACAGATGACGTCTCTTTCTAGAAGATCTAAAAATGCACTTTCAAAATAAGTGAATTCTGGAAAACGAAGGAGGGAAAATAGTTTCTTGTCTCTCTTGTAATCTGCTGAATGATAGAAATTTCGAAACAAAGGAGCAATCGGAAAATGAAGTGTCTCTGAACATTTCTTGAGGTGACAACGCCTCATTTCTTGAAATGTGTAATTAAAAATTCTTAGATTTTGTGAGAAACAATCTTTGGCAGATAGTTCATTTGTTGTCATTTCTGTTCTAAAATAAATTTCAAAAAATTTTTCGTGTTTCTTCTATTATTTTATCATGTATTTCTTCAAATTTCCCCGAATTCTAACAAAGAATACGCAATATTTCTTTTTTTAAAGCTGAAAACAAGATTTTCGCATTTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGACTTACACAGAATTCGTAA</pcr_primer_p1>
		<pcr_primer_p2>ACAAGAAACTATTTTCCCTCCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCGACTTACACAGAATTCGTAAAACCAACTGATGTAAGTGAATACTCTGTGTTGATGGTGATGATGCTGAAACGTAATGTATTCTAGCTACAATTTGTATTTGAAATGTTTTTTTTTGTATTTCTATGACCTAAGAAATATATATGCACTTTCAAAAGGACAGATGACGTCTCTTTCTAGAAGATCTAAAAATGCACTTTCAAAATAAGTGAATTCTGGAAAACGAAGGAGGGAAAATAGTTTCTTGT</canonical_amplicon>
		<polymorphic_amplicon>TCGACTTACACAGAATTCGTAAAACCAACTGATGTAAGTGAATACTCTGTGTTGATGGTGATRATGCTGAAACGTAATGTATTCTAGCTACAATTTGTATTTGAAATGTTTTTTTTTGTATTTCTATGACCTAAGAAATATATATGCACTTTCAAAAGGACAGATGACGTCTCTTTCTAGAAGATCTAAAAATGCACTTTCAAAATAAGTGAATTCTGGAAAACGAAGGAGGGAAAATAGTTTCTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24810</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>292208</contig_pos>
        <strand>+</strand>
        <context>GGTGATRATG[A/C]TGAAACGTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCGTAAAACCAACTGATGTAAGTGAATACTCTGTGTTGATGGTGATGATG</left_flank>
        <right_flank>TGAAACGTAATGTATTCTAGCTACAATTTGTATTTGAAATGTTTTTTTTT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGGTTATCCTCTGTCGAAATGAAGATGTCAAAAGTAGCTGTTTTTTTCAGTTTCAAAAAAAAAAAAGAAATCGGTGAGTGTGTGTGCGATAGCCTCGCCGAACCAATGCATCTCATTTCCTGCTCAACCAAGAAATTCATTTCAGAATGAGGCTCTTCTCCTACCCATCTCAACCATTCGTTTTCCATTCGTCCTCCCCTTTTTTTCCCATTCTTCAAATTGGCCCATAATTTCCGGATGGCTCTTTTTCTTCTCGTCACAAAAACCACGGCCCGTCTCATTTTCTGCAGATGTCCTAAATGAAATGAATGTGATGCGTTTTACGTTATTTTTGATGCGCCACGCCTATTCGCCATTCGGCTCTACCTCCTGTGCATTTGGCATCAGATTTGAAATGCGTTGCTCTTTCGCAACCGTCAGCACAGAGTGCTTCGACTTACACAGAATTCGTAAAACCAACTGATGTAAGTGAATACTCTGTGTTGATGGTGATGATGCTGAAACGTAATGTATTCTAGCTACAATTTGTATTTGAAATGTTTTTTTTTGTATTTCTATGACCTAAGAAATATATATGCACTTTCAAAAGGACAGATGACGTCTCTTTCTAGAAGATCTAAAAATGCACTTTCAAAATAAGTGAATTCTGGAAAACGAAGGAGGGAAAATAGTTTCTTGTCTCTCTTGTAATCTGCTGAATGATAGAAATTTCGAAACAAAGGAGCAATCGGAAAATGAAGTGTCTCTGAACATTTCTTGAGGTGACAACGCCTCATTTCTTGAAATGTGTAATTAAAAATTCTTAGATTTTGTGAGAAACAATCTTTGGCAGATAGTTCATTTGTTGTCATTTCTGTTCTAAAATAAATTTCAAAAAATTTTTCGTGTTTCTTCTATTATTTTATCATGTATTTCTTCAAATTTCCCCGAATTCTAACAAAGAATACGCAATATTTCTTTTTTTAAAGCTGAAAACAAGATTTTCGCATTTCTGTGCA</canonical>
            <polymorphic>ACTGGTTATCCTCTGTCGAAATGAAGATGTCAAAAGTAGCTGTTTTTTTCAGTTTCAAAAAAAAAAAAGAAATCGGTGAGTGTGTGTGCGATAGCCTCGCCGAACCAATGCATCTCATTTCCTGCTCAACCAAGAAATTCATTTCAGAATGAGGCTCTTCTCCTACCCATCTCAACCATTCGTTTTCCATTCGTCCTCCCCTTTTTTTCCCATTCTTCAAATTGGCCCATAATTTCCGGATGGCTCTTTTTCTTCTCGTCACAAAAACCACGGCCCGTCTCATTTTCTGCAGATGTCCTAAATGAAATGAATGTGATGCGTTTTACGTTATTTTTGATGCGCCACGCCTATTCGCCATTCGGCTCTACCTCCTGTGCATTTGGCATCAGATTTGAAATGCGTTGCTCTTTCGCAACCGTCAGCACAGAGTGCTTCGACTTACACAGAATTCGTAAAACCAACTGATGTAAGTGAATACTCTGTGTTGATGGTGATGATGMTGAAACGTAATGTATTCTAGCTACAATTTGTATTTGAAATGTTTTTTTTTGTATTTCTATGACCTAAGAAATATATATGCACTTTCAAAAGGACAGATGACGTCTCTTTCTAGAAGATCTAAAAATGCACTTTCAAAATAAGTGAATTCTGGAAAACGAAGGAGGGAAAATAGTTTCTTGTCTCTCTTGTAATCTGCTGAATGATAGAAATTTCGAAACAAAGGAGCAATCGGAAAATGAAGTGTCTCTGAACATTTCTTGAGGTGACAACGCCTCATTTCTTGAAATGTGTAATTAAAAATTCTTAGATTTTGTGAGAAACAATCTTTGGCAGATAGTTCATTTGTTGTCATTTCTGTTCTAAAATAAATTTCAAAAAATTTTTCGTGTTTCTTCTATTATTTTATCATGTATTTCTTCAAATTTCCCCGAATTCTAACAAAGAATACGCAATATTTCTTTTTTTAAAGCTGAAAACAAGATTTTCGCATTTCTGTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGACTTACACAGAATTCGTAA</pcr_primer_p1>
		<pcr_primer_p2>ACAAGAAACTATTTTCCCTCCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCGACTTACACAGAATTCGTAAAACCAACTGATGTAAGTGAATACTCTGTGTTGATGGTGATGATGCTGAAACGTAATGTATTCTAGCTACAATTTGTATTTGAAATGTTTTTTTTTGTATTTCTATGACCTAAGAAATATATATGCACTTTCAAAAGGACAGATGACGTCTCTTTCTAGAAGATCTAAAAATGCACTTTCAAAATAAGTGAATTCTGGAAAACGAAGGAGGGAAAATAGTTTCTTGT</canonical_amplicon>
		<polymorphic_amplicon>TCGACTTACACAGAATTCGTAAAACCAACTGATGTAAGTGAATACTCTGTGTTGATGGTGATGATGMTGAAACGTAATGTATTCTAGCTACAATTTGTATTTGAAATGTTTTTTTTTGTATTTCTATGACCTAAGAAATATATATGCACTTTCAAAAGGACAGATGACGTCTCTTTCTAGAAGATCTAAAAATGCACTTTCAAAATAAGTGAATTCTGGAAAACGAAGGAGGGAAAATAGTTTCTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24811</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>292323</contig_pos>
        <strand>+</strand>
        <context>TCTTTCTAGA[A/G]GATCTAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAGAAATATATATGCACTTTCAAAAGGACAGATGACGTCTCTTTCTAGA</left_flank>
        <right_flank>GATCTAAAAATGCACTTTCAAAATAAGTGAATTCTGGAAAACGAAGGAGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTCCTGCTCAACCAAGAAATTCATTTCAGAATGAGGCTCTTCTCCTACCCATCTCAACCATTCGTTTTCCATTCGTCCTCCCCTTTTTTTCCCATTCTTCAAATTGGCCCATAATTTCCGGATGGCTCTTTTTCTTCTCGTCACAAAAACCACGGCCCGTCTCATTTTCTGCAGATGTCCTAAATGAAATGAATGTGATGCGTTTTACGTTATTTTTGATGCGCCACGCCTATTCGCCATTCGGCTCTACCTCCTGTGCATTTGGCATCAGATTTGAAATGCGTTGCTCTTTCGCAACCGTCAGCACAGAGTGCTTCGACTTACACAGAATTCGTAAAACCAACTGATGTAAGTGAATACTCTGTGTTGATGGTGATGATGCTGAAACGTAATGTATTCTAGCTACAATTTGTATTTGAAATGTTTTTTTTTGTATTTCTATGACCTAAGAAATATATATGCACTTTCAAAAGGACAGATGACGTCTCTTTCTAGAAGATCTAAAAATGCACTTTCAAAATAAGTGAATTCTGGAAAACGAAGGAGGGAAAATAGTTTCTTGTCTCTCTTGTAATCTGCTGAATGATAGAAATTTCGAAACAAAGGAGCAATCGGAAAATGAAGTGTCTCTGAACATTTCTTGAGGTGACAACGCCTCATTTCTTGAAATGTGTAATTAAAAATTCTTAGATTTTGTGAGAAACAATCTTTGGCAGATAGTTCATTTGTTGTCATTTCTGTTCTAAAATAAATTTCAAAAAATTTTTCGTGTTTCTTCTATTATTTTATCATGTATTTCTTCAAATTTCCCCGAATTCTAACAAAGAATACGCAATATTTCTTTTTTTAAAGCTGAAAACAAGATTTTCGCATTTCTGTGCAAACACCACCACGCGCAATTGCGGACCTGGGTTCGCAAACGTCGTGGTTCGCAACCGTCGCGTTTTCAACTGTCGGGTTCGCAAGTGTCGTGGTTCGCAAACGTCGCGGTTCGCAA</canonical>
            <polymorphic>CATTTCCTGCTCAACCAAGAAATTCATTTCAGAATGAGGCTCTTCTCCTACCCATCTCAACCATTCGTTTTCCATTCGTCCTCCCCTTTTTTTCCCATTCTTCAAATTGGCCCATAATTTCCGGATGGCTCTTTTTCTTCTCGTCACAAAAACCACGGCCCGTCTCATTTTCTGCAGATGTCCTAAATGAAATGAATGTGATGCGTTTTACGTTATTTTTGATGCGCCACGCCTATTCGCCATTCGGCTCTACCTCCTGTGCATTTGGCATCAGATTTGAAATGCGTTGCTCTTTCGCAACCGTCAGCACAGAGTGCTTCGACTTACACAGAATTCGTAAAACCAACTGATGTAAGTGAATACTCTGTGTTGATGGTGATGATGCTGAAACGTAATGTATTCTAGCTACAATTTGTATTTGAAATGTTTTTTTTTGTATTTCTATGACCTAAGAAATATATATGCACTTTCAAAAGGACAGATGACGTCTCTTTCTAGARGATCTAAAAATGCACTTTCAAAATAAGTGAATTCTGGAAAACGAAGGAGGGAAAATAGTTTCTTGTCTCTCTTGTAATCTGCTGAATGATAGAAATTTCGAAACAAAGGAGCAATCGGAAAATGAAGTGTCTCTGAACATTTCTTGAGGTGACAACGCCTCATTTCTTGAAATGTGTAATTAAAAATTCTTAGATTTTGTGAGAAACAATCTTTGGCAGATAGTTCATTTGTTGTCATTTCTGTTCTAAAATAAATTTCAAAAAATTTTTCGTGTTTCTTCTATTATTTTATCATGTATTTCTTCAAATTTCCCCGAATTCTAACAAAGAATACGCAATATTTCTTTTTTTAAAGCTGAAAACAAGATTTTCGCATTTCTGTGCAAACACCACCACGCGCAATTGCGGACCTGGGTTCGCAAACGTCGTGGTTCGCAACCGTCGCGTTTTCAACTGTCGGGTTCGCAAGTGTCGTGGTTCGCAAACGTCGCGGTTCGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTGAATACTCTGTGTTGATGGT</pcr_primer_p1>
		<pcr_primer_p2>GTTTCGAAATTTCTATCATTCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTGAATACTCTGTGTTGATGGTGATGATGCTGAAACGTAATGTATTCTAGCTACAATTTGTATTTGAAATGTTTTTTTTTGTATTTCTATGACCTAAGAAATATATATGCACTTTCAAAAGGACAGATGACGTCTCTTTCTAGAAGATCTAAAAATGCACTTTCAAAATAAGTGAATTCTGGAAAACGAAGGAGGGAAAATAGTTTCTTGTCTCTCTTGTAATCTGCTGAATGATAGAAATTTCGAAAC</canonical_amplicon>
		<polymorphic_amplicon>AGTGAATACTCTGTGTTGATGGTGATGATGCTGAAACGTAATGTATTCTAGCTACAATTTGTATTTGAAATGTTTTTTTTTGTATTTCTATGACCTAAGAAATATATATGCACTTTCAAAAGGACAGATGACGTCTCTTTCTAGARGATCTAAAAATGCACTTTCAAAATAAGTGAATTCTGGAAAACGAAGGAGGGAAAATAGTTTCTTGTCTCTCTTGTAATCTGCTGAATGATAGAAATTTCGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24812</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>292352</contig_pos>
        <strand>+</strand>
        <context>CAAAATAAGT[A/G]AATTCTGGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGATGACGTCTCTTTCTAGAAGATCTAAAAATGCACTTTCAAAATAAGT</left_flank>
        <right_flank>AATTCTGGAAAACGAAGGAGGGAAAATAGTTTCTTGTCTCTCTTGTAATC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAATGAGGCTCTTCTCCTACCCATCTCAACCATTCGTTTTCCATTCGTCCTCCCCTTTTTTTCCCATTCTTCAAATTGGCCCATAATTTCCGGATGGCTCTTTTTCTTCTCGTCACAAAAACCACGGCCCGTCTCATTTTCTGCAGATGTCCTAAATGAAATGAATGTGATGCGTTTTACGTTATTTTTGATGCGCCACGCCTATTCGCCATTCGGCTCTACCTCCTGTGCATTTGGCATCAGATTTGAAATGCGTTGCTCTTTCGCAACCGTCAGCACAGAGTGCTTCGACTTACACAGAATTCGTAAAACCAACTGATGTAAGTGAATACTCTGTGTTGATGGTGATGATGCTGAAACGTAATGTATTCTAGCTACAATTTGTATTTGAAATGTTTTTTTTTGTATTTCTATGACCTAAGAAATATATATGCACTTTCAAAAGGACAGATGACGTCTCTTTCTAGAAGATCTAAAAATGCACTTTCAAAATAAGTGAATTCTGGAAAACGAAGGAGGGAAAATAGTTTCTTGTCTCTCTTGTAATCTGCTGAATGATAGAAATTTCGAAACAAAGGAGCAATCGGAAAATGAAGTGTCTCTGAACATTTCTTGAGGTGACAACGCCTCATTTCTTGAAATGTGTAATTAAAAATTCTTAGATTTTGTGAGAAACAATCTTTGGCAGATAGTTCATTTGTTGTCATTTCTGTTCTAAAATAAATTTCAAAAAATTTTTCGTGTTTCTTCTATTATTTTATCATGTATTTCTTCAAATTTCCCCGAATTCTAACAAAGAATACGCAATATTTCTTTTTTTAAAGCTGAAAACAAGATTTTCGCATTTCTGTGCAAACACCACCACGCGCAATTGCGGACCTGGGTTCGCAAACGTCGTGGTTCGCAACCGTCGCGTTTTCAACTGTCGGGTTCGCAAGTGTCGTGGTTCGCAAACGTCGCGGTTCGCAACTGACGGGTTCGCAAACGTCTAGGAGCCG</canonical>
            <polymorphic>CAGAATGAGGCTCTTCTCCTACCCATCTCAACCATTCGTTTTCCATTCGTCCTCCCCTTTTTTTCCCATTCTTCAAATTGGCCCATAATTTCCGGATGGCTCTTTTTCTTCTCGTCACAAAAACCACGGCCCGTCTCATTTTCTGCAGATGTCCTAAATGAAATGAATGTGATGCGTTTTACGTTATTTTTGATGCGCCACGCCTATTCGCCATTCGGCTCTACCTCCTGTGCATTTGGCATCAGATTTGAAATGCGTTGCTCTTTCGCAACCGTCAGCACAGAGTGCTTCGACTTACACAGAATTCGTAAAACCAACTGATGTAAGTGAATACTCTGTGTTGATGGTGATGATGCTGAAACGTAATGTATTCTAGCTACAATTTGTATTTGAAATGTTTTTTTTTGTATTTCTATGACCTAAGAAATATATATGCACTTTCAAAAGGACAGATGACGTCTCTTTCTAGAAGATCTAAAAATGCACTTTCAAAATAAGTRAATTCTGGAAAACGAAGGAGGGAAAATAGTTTCTTGTCTCTCTTGTAATCTGCTGAATGATAGAAATTTCGAAACAAAGGAGCAATCGGAAAATGAAGTGTCTCTGAACATTTCTTGAGGTGACAACGCCTCATTTCTTGAAATGTGTAATTAAAAATTCTTAGATTTTGTGAGAAACAATCTTTGGCAGATAGTTCATTTGTTGTCATTTCTGTTCTAAAATAAATTTCAAAAAATTTTTCGTGTTTCTTCTATTATTTTATCATGTATTTCTTCAAATTTCCCCGAATTCTAACAAAGAATACGCAATATTTCTTTTTTTAAAGCTGAAAACAAGATTTTCGCATTTCTGTGCAAACACCACCACGCGCAATTGCGGACCTGGGTTCGCAAACGTCGTGGTTCGCAACCGTCGCGTTTTCAACTGTCGGGTTCGCAAGTGTCGTGGTTCGCAAACGTCGCGGTTCGCAACTGACGGGTTCGCAAACGTCTAGGAGCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>302 213 198 91 69 64 43 10 10</canonical_bands>
                <polymorphic_bands>302 262 213 91 69 43 10 10</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>302 287 213 198</canonical_bands>
                <polymorphic_bands>485 302 213</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>117 109 100 88 73 53 48 48 45 41 35 32 30 29 25 25 22 15 12 11 9 9 7 6 5 3 3</canonical_bands>
                <polymorphic_bands>117 115 109 88 73 53 48 48 45 41 35 32 30 29 25 25 22 12 11 9 9 7 6 5 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTGAATACTCTGTGTTGATGGT</pcr_primer_p1>
		<pcr_primer_p2>GTTTCGAAATTTCTATCATTCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTGAATACTCTGTGTTGATGGTGATGATGCTGAAACGTAATGTATTCTAGCTACAATTTGTATTTGAAATGTTTTTTTTTGTATTTCTATGACCTAAGAAATATATATGCACTTTCAAAAGGACAGATGACGTCTCTTTCTAGAAGATCTAAAAATGCACTTTCAAAATAAGTGAATTCTGGAAAACGAAGGAGGGAAAATAGTTTCTTGTCTCTCTTGTAATCTGCTGAATGATAGAAATTTCGAAAC</canonical_amplicon>
		<polymorphic_amplicon>AGTGAATACTCTGTGTTGATGGTGATGATGCTGAAACGTAATGTATTCTAGCTACAATTTGTATTTGAAATGTTTTTTTTTGTATTTCTATGACCTAAGAAATATATATGCACTTTCAAAAGGACAGATGACGTCTCTTTCTAGAAGATCTAAAAATGCACTTTCAAAATAAGTRAATTCTGGAAAACGAAGGAGGGAAAATAGTTTCTTGTCTCTCTTGTAATCTGCTGAATGATAGAAATTTCGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24813</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>292399</contig_pos>
        <strand>+</strand>
        <context>TCTCTCTTGT[A/G]ATCTGCTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTGAATTCTGGAAAACGAAGGAGGGAAAATAGTTTCTTGTCTCTCTTGT</left_flank>
        <right_flank>ATCTGCTGAATGATAGAAATTTCGAAACAAAGGAGCAATCGGAAAATGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTCCTCCCCTTTTTTTCCCATTCTTCAAATTGGCCCATAATTTCCGGATGGCTCTTTTTCTTCTCGTCACAAAAACCACGGCCCGTCTCATTTTCTGCAGATGTCCTAAATGAAATGAATGTGATGCGTTTTACGTTATTTTTGATGCGCCACGCCTATTCGCCATTCGGCTCTACCTCCTGTGCATTTGGCATCAGATTTGAAATGCGTTGCTCTTTCGCAACCGTCAGCACAGAGTGCTTCGACTTACACAGAATTCGTAAAACCAACTGATGTAAGTGAATACTCTGTGTTGATGGTGATGATGCTGAAACGTAATGTATTCTAGCTACAATTTGTATTTGAAATGTTTTTTTTTGTATTTCTATGACCTAAGAAATATATATGCACTTTCAAAAGGACAGATGACGTCTCTTTCTAGAAGATCTAAAAATGCACTTTCAAAATAAGTGAATTCTGGAAAACGAAGGAGGGAAAATAGTTTCTTGTCTCTCTTGTAATCTGCTGAATGATAGAAATTTCGAAACAAAGGAGCAATCGGAAAATGAAGTGTCTCTGAACATTTCTTGAGGTGACAACGCCTCATTTCTTGAAATGTGTAATTAAAAATTCTTAGATTTTGTGAGAAACAATCTTTGGCAGATAGTTCATTTGTTGTCATTTCTGTTCTAAAATAAATTTCAAAAAATTTTTCGTGTTTCTTCTATTATTTTATCATGTATTTCTTCAAATTTCCCCGAATTCTAACAAAGAATACGCAATATTTCTTTTTTTAAAGCTGAAAACAAGATTTTCGCATTTCTGTGCAAACACCACCACGCGCAATTGCGGACCTGGGTTCGCAAACGTCGTGGTTCGCAACCGTCGCGTTTTCAACTGTCGGGTTCGCAAGTGTCGTGGTTCGCAAACGTCGCGGTTCGCAACTGACGGGTTCGCAAACGTCTAGGAGCCGAAAAACTGGCTGCATGACATTTCGAGAATGAACATTTCGCAACTCTG</canonical>
            <polymorphic>CGTCCTCCCCTTTTTTTCCCATTCTTCAAATTGGCCCATAATTTCCGGATGGCTCTTTTTCTTCTCGTCACAAAAACCACGGCCCGTCTCATTTTCTGCAGATGTCCTAAATGAAATGAATGTGATGCGTTTTACGTTATTTTTGATGCGCCACGCCTATTCGCCATTCGGCTCTACCTCCTGTGCATTTGGCATCAGATTTGAAATGCGTTGCTCTTTCGCAACCGTCAGCACAGAGTGCTTCGACTTACACAGAATTCGTAAAACCAACTGATGTAAGTGAATACTCTGTGTTGATGGTGATGATGCTGAAACGTAATGTATTCTAGCTACAATTTGTATTTGAAATGTTTTTTTTTGTATTTCTATGACCTAAGAAATATATATGCACTTTCAAAAGGACAGATGACGTCTCTTTCTAGAAGATCTAAAAATGCACTTTCAAAATAAGTGAATTCTGGAAAACGAAGGAGGGAAAATAGTTTCTTGTCTCTCTTGTRATCTGCTGAATGATAGAAATTTCGAAACAAAGGAGCAATCGGAAAATGAAGTGTCTCTGAACATTTCTTGAGGTGACAACGCCTCATTTCTTGAAATGTGTAATTAAAAATTCTTAGATTTTGTGAGAAACAATCTTTGGCAGATAGTTCATTTGTTGTCATTTCTGTTCTAAAATAAATTTCAAAAAATTTTTCGTGTTTCTTCTATTATTTTATCATGTATTTCTTCAAATTTCCCCGAATTCTAACAAAGAATACGCAATATTTCTTTTTTTAAAGCTGAAAACAAGATTTTCGCATTTCTGTGCAAACACCACCACGCGCAATTGCGGACCTGGGTTCGCAAACGTCGTGGTTCGCAACCGTCGCGTTTTCAACTGTCGGGTTCGCAAGTGTCGTGGTTCGCAAACGTCGCGGTTCGCAACTGACGGGTTCGCAAACGTCTAGGAGCCGAAAAACTGGCTGCATGACATTTCGAGAATGAACATTTCGCAACTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAAAAATGCACTTTCAAAATAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTAGAACAGAAATGACAACAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTAAAAATGCACTTTCAAAATAAGTGAATTCTGGAAAACGAAGGAGGGAAAATAGTTTCTTGTCTCTCTTGTAATCTGCTGAATGATAGAAATTTCGAAACAAAGGAGCAATCGGAAAATGAAGTGTCTCTGAACATTTCTTGAGGTGACAACGCCTCATTTCTTGAAATGTGTAATTAAAAATTCTTAGATTTTGTGAGAAACAATCTTTGGCAGATAGTTCATTTGTTGTCATTTCTGTTCTAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTAAAAATGCACTTTCAAAATAAGTGAATTCTGGAAAACGAAGGAGGGAAAATAGTTTCTTGTCTCTCTTGTRATCTGCTGAATGATAGAAATTTCGAAACAAAGGAGCAATCGGAAAATGAAGTGTCTCTGAACATTTCTTGAGGTGACAACGCCTCATTTCTTGAAATGTGTAATTAAAAATTCTTAGATTTTGTGAGAAACAATCTTTGGCAGATAGTTCATTTGTTGTCATTTCTGTTCTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24814</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>310543</contig_pos>
        <strand></strand>
        <context>cattagttgg[C/G]acatttttaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTCAACTAATAAAATTTTTATCATAATATCAGCAACAATTCATTAGTTGG</left_flank>
        <right_flank>ACATTTTTAATATCTTTTTATGTAACATGAGATAATTGAGCTTAAAGTGC</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTCATCAGAAAGTAAAATTGAAAAAAAAGATGTGATGCATTTGTTAATACGGAGAGAGAACAGTTGTTAATACTGAGAGCAGGTGCCATTGCAGAGAGGTTGAACCGAGTTTGTTGCTGTCTTCTGGTAAACGTTTTTCGGAGATCTGTGATAAATGATAATTGGTTGCGGGATGATCAATGAAACAGTTATCACACTTTTAACAAAGAATCTGGACAACCAGAAATGTCACTCTATTGTCTAATATTGTTTGAATGAAACTGTTGTGACATTGTGAATCATTATCTGGACAGTAACACATGATTTTTTTGCAAGTGCTGACACATAATCAGAGCTGCCCCACCGCCGGCAGCACTAAAAAATACCCGTTAACACACTTTAAAAAGCTATCGTATGCTTACCCTTTGAGCTCAATTATCTCAATTCTTATAAGAGATAACAAAGGTATGTCAACTAATAAAATTTTTATCATAATATCAGCAACAATTCATTAGTTGGCACATTTTTAATATCTTTTTATGTAACATGAGATAATTGAGCTTAAAGTGCAAATATAGGGTAACCTTCTAGACGGTTTACAGTAAGTCACAACTTAATATTTTTAAACATTATTTTCGCGTTTTCTCTGAATTTCGACCGGTTCTTTGACAAATTTTGATCAAATTATACATAATAAGACCATAATTTGAAAAATTTGAAACGTTTCAAAATTTATAATGTAAAAATTATGTTAGTTCTCTCTCTACTGTTTTGCTATAGCTATAATAACAATTATTTCAAATCTTAGTCGCTTCTATTCAAGTTTTTTAACGATTTTCCGTATGTCTTGTGAATTTTGAAAACGAAGGCTGCGACCAATCGGTTCTTCTCCTTTGGCTCACCGTTGATTTTGATAGGCTTGAGTAAAACCACGAATTAAAGAGAAAAATTTTTATATTTTTCCTATTTTCAGATATTTCTAACTTCTCTACTTAATGCCATACATCAACAATTTTTTTC</canonical>
            <polymorphic>GGTCATCAGAAAGTAAAATTGAAAAAAAAGATGTGATGCATTTGTTAATACGGAGAGAGAACAGTTGTTAATACTGAGAGCAGGTGCCATTGCAGAGAGGTTGAACCGAGTTTGTTGCTGTCTTCTGGTAAACGTTTTTCGGAGATCTGTGATAAATGATAATTGGTTGCGGGATGATCAATGAAACAGTTATCACACTTTTAACAAAGAATCTGGACAACCAGAAATGTCACTCTATTGTCTAATATTGTTTGAATGAAACTGTTGTGACATTGTGAATCATTATCTGGACAGTAACACATGATTTTTTTGCAAGTGCTGACACATAATCAGAGCTGCCCCACCGCCGGCAGCACTAAAAAATACCCGTTAACACACTTTAAAAAGCTATCGTATGCTTACCCTTTGAGCTCAATTATCTCAATTCTTATAAGAGATAACAAAGGTATGTCAACTAATAAAATTTTTATCATAATATCAGCAACAATTCATTAGTTGGSACATTTTTAATATCTTTTTATGTAACATGAGATAATTGAGCTTAAAGTGCAAATATAGGGTAACCTTCTAGACGGTTTACAGTAAGTCACAACTTAATATTTTTAAACATTATTTTCGCGTTTTCTCTGAATTTCGACCGGTTCTTTGACAAATTTTGATCAAATTATACATAATAAGACCATAATTTGAAAAATTTGAAACGTTTCAAAATTTATAATGTAAAAATTATGTTAGTTCTCTCTCTACTGTTTTGCTATAGCTATAATAACAATTATTTCAAATCTTAGTCGCTTCTATTCAAGTTTTTTAACGATTTTCCGTATGTCTTGTGAATTTTGAAAACGAAGGCTGCGACCAATCGGTTCTTCTCCTTTGGCTCACCGTTGATTTTGATAGGCTTGAGTAAAACCACGAATTAAAGAGAAAAATTTTTATATTTTTCCTATTTTCAGATATTTCTAACTTCTCTACTTAATGCCATACATCAACAATTTTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>243 124 88 65 51 49 48 44 40 37 35 35 31 22 20 19 19 12 8 6 2 2</canonical_bands>
                <polymorphic_bands>243 172 88 65 51 49 44 40 37 35 35 31 22 20 19 19 12 8 6 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGCTGACACATAATCAGAGC</pcr_primer_p1>
		<pcr_primer_p2>GAAAACGCGAAAATAATGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>310</pcr_amplicon_size>
		<canonical_amplicon>GTGCTGACACATAATCAGAGCTGCCCCACCGCCGGCAGCACTAAAAAATACCCGTTAACACACTTTAAAAAGCTATCGTATGCTTACCCTTTGAGCTCAATTATCTCAATTCTTATAAGAGATAACAAAGGTATGTCAACTAATAAAATTTTTATCATAATATCAGCAACAATTCATTAGTTGGCACATTTTTAATATCTTTTTATGTAACATGAGATAATTGAGCTTAAAGTGCAAATATAGGGTAACCTTCTAGACGGTTTACAGTAAGTCACAACTTAATATTTTTAAACATTATTTTCGCGTTTTC</canonical_amplicon>
		<polymorphic_amplicon>GTGCTGACACATAATCAGAGCTGCCCCACCGCCGGCAGCACTAAAAAATACCCGTTAACACACTTTAAAAAGCTATCGTATGCTTACCCTTTGAGCTCAATTATCTCAATTCTTATAAGAGATAACAAAGGTATGTCAACTAATAAAATTTTTATCATAATATCAGCAACAATTCATTAGTTGGSACATTTTTAATATCTTTTTATGTAACATGAGATAATTGAGCTTAAAGTGCAAATATAGGGTAACCTTCTAGACGGTTTACAGTAAGTCACAACTTAATATTTTTAAACATTATTTTCGCGTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24815</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>310588</contig_pos>
        <strand>+</strand>
        <context>attgagctta[A/G]agtgcaaata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTGGCACATTTTTAATATCTTTTTATGTAACATGAGATAATTGAGCTTA</left_flank>
        <right_flank>AGTGCAAATATAGGGTAACCTTCTAGACGGTTTACAGTAAGTCACAACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATACGGAGAGAGAACAGTTGTTAATACTGAGAGCAGGTGCCATTGCAGAGAGGTTGAACCGAGTTTGTTGCTGTCTTCTGGTAAACGTTTTTCGGAGATCTGTGATAAATGATAATTGGTTGCGGGATGATCAATGAAACAGTTATCACACTTTTAACAAAGAATCTGGACAACCAGAAATGTCACTCTATTGTCTAATATTGTTTGAATGAAACTGTTGTGACATTGTGAATCATTATCTGGACAGTAACACATGATTTTTTTGCAAGTGCTGACACATAATCAGAGCTGCCCCACCGCCGGCAGCACTAAAAAATACCCGTTAACACACTTTAAAAAGCTATCGTATGCTTACCCTTTGAGCTCAATTATCTCAATTCTTATAAGAGATAACAAAGGTATGTCAACTAATAAAATTTTTATCATAATATCAGCAACAATTCATTAGTTGGCACATTTTTAATATCTTTTTATGTAACATGAGATAATTGAGCTTAAAGTGCAAATATAGGGTAACCTTCTAGACGGTTTACAGTAAGTCACAACTTAATATTTTTAAACATTATTTTCGCGTTTTCTCTGAATTTCGACCGGTTCTTTGACAAATTTTGATCAAATTATACATAATAAGACCATAATTTGAAAAATTTGAAACGTTTCAAAATTTATAATGTAAAAATTATGTTAGTTCTCTCTCTACTGTTTTGCTATAGCTATAATAACAATTATTTCAAATCTTAGTCGCTTCTATTCAAGTTTTTTAACGATTTTCCGTATGTCTTGTGAATTTTGAAAACGAAGGCTGCGACCAATCGGTTCTTCTCCTTTGGCTCACCGTTGATTTTGATAGGCTTGAGTAAAACCACGAATTAAAGAGAAAAATTTTTATATTTTTCCTATTTTCAGATATTTCTAACTTCTCTACTTAATGCCATACATCAACAATTTTTTTCTCAGCTGCATCATTTTTTGGAACCCTAAATCTCATTTTCCTTGTT</canonical>
            <polymorphic>TAATACGGAGAGAGAACAGTTGTTAATACTGAGAGCAGGTGCCATTGCAGAGAGGTTGAACCGAGTTTGTTGCTGTCTTCTGGTAAACGTTTTTCGGAGATCTGTGATAAATGATAATTGGTTGCGGGATGATCAATGAAACAGTTATCACACTTTTAACAAAGAATCTGGACAACCAGAAATGTCACTCTATTGTCTAATATTGTTTGAATGAAACTGTTGTGACATTGTGAATCATTATCTGGACAGTAACACATGATTTTTTTGCAAGTGCTGACACATAATCAGAGCTGCCCCACCGCCGGCAGCACTAAAAAATACCCGTTAACACACTTTAAAAAGCTATCGTATGCTTACCCTTTGAGCTCAATTATCTCAATTCTTATAAGAGATAACAAAGGTATGTCAACTAATAAAATTTTTATCATAATATCAGCAACAATTCATTAGTTGGCACATTTTTAATATCTTTTTATGTAACATGAGATAATTGAGCTTARAGTGCAAATATAGGGTAACCTTCTAGACGGTTTACAGTAAGTCACAACTTAATATTTTTAAACATTATTTTCGCGTTTTCTCTGAATTTCGACCGGTTCTTTGACAAATTTTGATCAAATTATACATAATAAGACCATAATTTGAAAAATTTGAAACGTTTCAAAATTTATAATGTAAAAATTATGTTAGTTCTCTCTCTACTGTTTTGCTATAGCTATAATAACAATTATTTCAAATCTTAGTCGCTTCTATTCAAGTTTTTTAACGATTTTCCGTATGTCTTGTGAATTTTGAAAACGAAGGCTGCGACCAATCGGTTCTTCTCCTTTGGCTCACCGTTGATTTTGATAGGCTTGAGTAAAACCACGAATTAAAGAGAAAAATTTTTATATTTTTCCTATTTTCAGATATTTCTAACTTCTCTACTTAATGCCATACATCAACAATTTTTTTCTCAGCTGCATCATTTTTTGGAACCCTAAATCTCATTTTCCTTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>205 169 133 127 109 72 56 52 35 23 10 9</canonical_bands>
                <polymorphic_bands>205 169 133 127 109 87 72 56 23 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGCTGACACATAATCAGAGC</pcr_primer_p1>
		<pcr_primer_p2>GAAAACGCGAAAATAATGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>310</pcr_amplicon_size>
		<canonical_amplicon>GTGCTGACACATAATCAGAGCTGCCCCACCGCCGGCAGCACTAAAAAATACCCGTTAACACACTTTAAAAAGCTATCGTATGCTTACCCTTTGAGCTCAATTATCTCAATTCTTATAAGAGATAACAAAGGTATGTCAACTAATAAAATTTTTATCATAATATCAGCAACAATTCATTAGTTGGCACATTTTTAATATCTTTTTATGTAACATGAGATAATTGAGCTTAAAGTGCAAATATAGGGTAACCTTCTAGACGGTTTACAGTAAGTCACAACTTAATATTTTTAAACATTATTTTCGCGTTTTC</canonical_amplicon>
		<polymorphic_amplicon>GTGCTGACACATAATCAGAGCTGCCCCACCGCCGGCAGCACTAAAAAATACCCGTTAACACACTTTAAAAAGCTATCGTATGCTTACCCTTTGAGCTCAATTATCTCAATTCTTATAAGAGATAACAAAGGTATGTCAACTAATAAAATTTTTATCATAATATCAGCAACAATTCATTAGTTGGCACATTTTTAATATCTTTTTATGTAACATGAGATAATTGAGCTTARAGTGCAAATATAGGGTAACCTTCTAGACGGTTTACAGTAAGTCACAACTTAATATTTTTAAACATTATTTTCGCGTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24816</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>310776</contig_pos>
        <strand>+</strand>
        <context>AAAATTATGT[C/T]AGTTCTCTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATTTGAAAAATTTGAAACGTTTCAAAATTTATAATGTAAAAATTATGT</left_flank>
        <right_flank>AGTTCTCTCTCTACTGTTTTGCTATAGCTATAATAACAATTATTTCAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTATTGTCTAATATTGTTTGAATGAAACTGTTGTGACATTGTGAATCATTATCTGGACAGTAACACATGATTTTTTTGCAAGTGCTGACACATAATCAGAGCTGCCCCACCGCCGGCAGCACTAAAAAATACCCGTTAACACACTTTAAAAAGCTATCGTATGCTTACCCTTTGAGCTCAATTATCTCAATTCTTATAAGAGATAACAAAGGTATGTCAACTAATAAAATTTTTATCATAATATCAGCAACAATTCATTAGTTGGCACATTTTTAATATCTTTTTATGTAACATGAGATAATTGAGCTTAAAGTGCAAATATAGGGTAACCTTCTAGACGGTTTACAGTAAGTCACAACTTAATATTTTTAAACATTATTTTCGCGTTTTCTCTGAATTTCGACCGGTTCTTTGACAAATTTTGATCAAATTATACATAATAAGACCATAATTTGAAAAATTTGAAACGTTTCAAAATTTATAATGTAAAAATTATGTTAGTTCTCTCTCTACTGTTTTGCTATAGCTATAATAACAATTATTTCAAATCTTAGTCGCTTCTATTCAAGTTTTTTAACGATTTTCCGTATGTCTTGTGAATTTTGAAAACGAAGGCTGCGACCAATCGGTTCTTCTCCTTTGGCTCACCGTTGATTTTGATAGGCTTGAGTAAAACCACGAATTAAAGAGAAAAATTTTTATATTTTTCCTATTTTCAGATATTTCTAACTTCTCTACTTAATGCCATACATCAACAATTTTTTTCTCAGCTGCATCATTTTTTGGAACCCTAAATCTCATTTTCCTTGTTTTTCAACAAATTTCCTAACACCCGTTTTCCACAGCTGTTTCCATACATGATGCAATTTCTTCCTCCCCCTCTCTTCTCGCAGCTATTCTGATTAGCATTAATCTCTTCCTCCTGTTTCAGGTGTTTTTACTTCCTGGTTCTAGAAACTCTGAAATATTTCCTCCTTCTTCTGCTCTCTCCTCTTTCAC</canonical>
            <polymorphic>TCTATTGTCTAATATTGTTTGAATGAAACTGTTGTGACATTGTGAATCATTATCTGGACAGTAACACATGATTTTTTTGCAAGTGCTGACACATAATCAGAGCTGCCCCACCGCCGGCAGCACTAAAAAATACCCGTTAACACACTTTAAAAAGCTATCGTATGCTTACCCTTTGAGCTCAATTATCTCAATTCTTATAAGAGATAACAAAGGTATGTCAACTAATAAAATTTTTATCATAATATCAGCAACAATTCATTAGTTGGCACATTTTTAATATCTTTTTATGTAACATGAGATAATTGAGCTTAAAGTGCAAATATAGGGTAACCTTCTAGACGGTTTACAGTAAGTCACAACTTAATATTTTTAAACATTATTTTCGCGTTTTCTCTGAATTTCGACCGGTTCTTTGACAAATTTTGATCAAATTATACATAATAAGACCATAATTTGAAAAATTTGAAACGTTTCAAAATTTATAATGTAAAAATTATGTYAGTTCTCTCTCTACTGTTTTGCTATAGCTATAATAACAATTATTTCAAATCTTAGTCGCTTCTATTCAAGTTTTTTAACGATTTTCCGTATGTCTTGTGAATTTTGAAAACGAAGGCTGCGACCAATCGGTTCTTCTCCTTTGGCTCACCGTTGATTTTGATAGGCTTGAGTAAAACCACGAATTAAAGAGAAAAATTTTTATATTTTTCCTATTTTCAGATATTTCTAACTTCTCTACTTAATGCCATACATCAACAATTTTTTTCTCAGCTGCATCATTTTTTGGAACCCTAAATCTCATTTTCCTTGTTTTTCAACAAATTTCCTAACACCCGTTTTCCACAGCTGTTTCCATACATGATGCAATTTCTTCCTCCCCCTCTCTTCTCGCAGCTATTCTGATTAGCATTAATCTCTTCCTCCTGTTTCAGGTGTTTTTACTTCCTGGTTCTAGAAACTCTGAAATATTTCCTCCTTCTTCTGCTCTCTCCTCTTTCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAAACATTATTTTCGCGTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTTTTCAAAATTCACAAGACATAC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTAAACATTATTTTCGCGTTTTCTCTGAATTTCGACCGGTTCTTTGACAAATTTTGATCAAATTATACATAATAAGACCATAATTTGAAAAATTTGAAACGTTTCAAAATTTATAATGTAAAAATTATGTTAGTTCTCTCTCTACTGTTTTGCTATAGCTATAATAACAATTATTTCAAATCTTAGTCGCTTCTATTCAAGTTTTTTAACGATTTTCCGTATGTCTTGTGAATTTTGAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TTAAACATTATTTTCGCGTTTTCTCTGAATTTCGACCGGTTCTTTGACAAATTTTGATCAAATTATACATAATAAGACCATAATTTGAAAAATTTGAAACGTTTCAAAATTTATAATGTAAAAATTATGTYAGTTCTCTCTCTACTGTTTTGCTATAGCTATAATAACAATTATTTCAAATCTTAGTCGCTTCTATTCAAGTTTTTTAACGATTTTCCGTATGTCTTGTGAATTTTGAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24817</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>310817</contig_pos>
        <strand></strand>
        <context>TAATAACAAT[T/C]ATTTCAAATC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAATTATGTTAGTTCTCTCTCTACTGTTTTGCTATAGCTATAATAACAAT</left_flank>
        <right_flank>ATTTCAAATCTTAGTCGCTTCTATTCAAGTTTTTTAACGATTTTCCGTAT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGAATCATTATCTGGACAGTAACACATGATTTTTTTGCAAGTGCTGACACATAATCAGAGCTGCCCCACCGCCGGCAGCACTAAAAAATACCCGTTAACACACTTTAAAAAGCTATCGTATGCTTACCCTTTGAGCTCAATTATCTCAATTCTTATAAGAGATAACAAAGGTATGTCAACTAATAAAATTTTTATCATAATATCAGCAACAATTCATTAGTTGGCACATTTTTAATATCTTTTTATGTAACATGAGATAATTGAGCTTAAAGTGCAAATATAGGGTAACCTTCTAGACGGTTTACAGTAAGTCACAACTTAATATTTTTAAACATTATTTTCGCGTTTTCTCTGAATTTCGACCGGTTCTTTGACAAATTTTGATCAAATTATACATAATAAGACCATAATTTGAAAAATTTGAAACGTTTCAAAATTTATAATGTAAAAATTATGTTAGTTCTCTCTCTACTGTTTTGCTATAGCTATAATAACAATTATTTCAAATCTTAGTCGCTTCTATTCAAGTTTTTTAACGATTTTCCGTATGTCTTGTGAATTTTGAAAACGAAGGCTGCGACCAATCGGTTCTTCTCCTTTGGCTCACCGTTGATTTTGATAGGCTTGAGTAAAACCACGAATTAAAGAGAAAAATTTTTATATTTTTCCTATTTTCAGATATTTCTAACTTCTCTACTTAATGCCATACATCAACAATTTTTTTCTCAGCTGCATCATTTTTTGGAACCCTAAATCTCATTTTCCTTGTTTTTCAACAAATTTCCTAACACCCGTTTTCCACAGCTGTTTCCATACATGATGCAATTTCTTCCTCCCCCTCTCTTCTCGCAGCTATTCTGATTAGCATTAATCTCTTCCTCCTGTTTCAGGTGTTTTTACTTCCTGGTTCTAGAAACTCTGAAATATTTCCTCCTTCTTCTGCTCTCTCCTCTTTCACCAACACCCACTTTGAACATGGGAAAATGTAATCTGCTTGAA</canonical>
            <polymorphic>GTGAATCATTATCTGGACAGTAACACATGATTTTTTTGCAAGTGCTGACACATAATCAGAGCTGCCCCACCGCCGGCAGCACTAAAAAATACCCGTTAACACACTTTAAAAAGCTATCGTATGCTTACCCTTTGAGCTCAATTATCTCAATTCTTATAAGAGATAACAAAGGTATGTCAACTAATAAAATTTTTATCATAATATCAGCAACAATTCATTAGTTGGCACATTTTTAATATCTTTTTATGTAACATGAGATAATTGAGCTTAAAGTGCAAATATAGGGTAACCTTCTAGACGGTTTACAGTAAGTCACAACTTAATATTTTTAAACATTATTTTCGCGTTTTCTCTGAATTTCGACCGGTTCTTTGACAAATTTTGATCAAATTATACATAATAAGACCATAATTTGAAAAATTTGAAACGTTTCAAAATTTATAATGTAAAAATTATGTTAGTTCTCTCTCTACTGTTTTGCTATAGCTATAATAACAATYATTTCAAATCTTAGTCGCTTCTATTCAAGTTTTTTAACGATTTTCCGTATGTCTTGTGAATTTTGAAAACGAAGGCTGCGACCAATCGGTTCTTCTCCTTTGGCTCACCGTTGATTTTGATAGGCTTGAGTAAAACCACGAATTAAAGAGAAAAATTTTTATATTTTTCCTATTTTCAGATATTTCTAACTTCTCTACTTAATGCCATACATCAACAATTTTTTTCTCAGCTGCATCATTTTTTGGAACCCTAAATCTCATTTTCCTTGTTTTTCAACAAATTTCCTAACACCCGTTTTCCACAGCTGTTTCCATACATGATGCAATTTCTTCCTCCCCCTCTCTTCTCGCAGCTATTCTGATTAGCATTAATCTCTTCCTCCTGTTTCAGGTGTTTTTACTTCCTGGTTCTAGAAACTCTGAAATATTTCCTCCTTCTTCTGCTCTCTCCTCTTTCACCAACACCCACTTTGAACATGGGAAAATGTAATCTGCTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>176 139 96 82 63 63 62 48 46 45 39 24 22 21 17 15 13 11 9 9</canonical_bands>
                <polymorphic_bands>176 139 108 96 82 63 63 48 45 39 24 22 21 17 15 13 11 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAAACATTATTTTCGCGTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTTTTCAAAATTCACAAGACATAC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTAAACATTATTTTCGCGTTTTCTCTGAATTTCGACCGGTTCTTTGACAAATTTTGATCAAATTATACATAATAAGACCATAATTTGAAAAATTTGAAACGTTTCAAAATTTATAATGTAAAAATTATGTTAGTTCTCTCTCTACTGTTTTGCTATAGCTATAATAACAATTATTTCAAATCTTAGTCGCTTCTATTCAAGTTTTTTAACGATTTTCCGTATGTCTTGTGAATTTTGAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TTAAACATTATTTTCGCGTTTTCTCTGAATTTCGACCGGTTCTTTGACAAATTTTGATCAAATTATACATAATAAGACCATAATTTGAAAAATTTGAAACGTTTCAAAATTTATAATGTAAAAATTATGTTAGTTCTCTCTCTACTGTTTTGCTATAGCTATAATAACAATYATTTCAAATCTTAGTCGCTTCTATTCAAGTTTTTTAACGATTTTCCGTATGTCTTGTGAATTTTGAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24818</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>314115</contig_pos>
        <strand>+</strand>
        <context>ATCAGTGTGT[A/T]TTTGTGTCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAACCAAACGCCCCCATCTCTTTCATTTTGCAGTCCTAGATCAGTGTGT</left_flank>
        <right_flank>TTTGTGTCAGATTCTGAGATTCTATATTCCAAAGAAAGGAACAATGTCCT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTCAAAACTGCCTTTTACTGACTACTTACTGAAATACGTGCCAAATGCATTTTCTTGACATCCGCTTTTCCCTCGGGAATCCATTCTAAAACGGGGCGAGCTATGAACTCTAAGACCCGAGAGTCCGTGTGTTTTTCCTTTCCCTCCTTTTCCAGCTTGACTTCTTTCCCCTTCGATTTCTGGTCGTTTGCAGTTCATTGTGAAACAGAAAAAATATTCGGTCCGAGAAAAAAGAAAAAACCCCAAATTTGGGATGTTGATTCGGTGAAACAAGCATGATTGGTATCGTTGCTCTGTGCCCAAGTTTTATTAGCAAATCGCATGTTGTTTGAAACATTGTCAGCTTCCGTCCGCAGGGTTTGTGTTTCTCGTCTCGTTAAGGGAGTGGCAACTGATGCCTCCCAAAAAAAGCCAAGTTTTCTTGGGGACGGCGCTATCTGATGCCCCAAACCAAACGCCCCCATCTCTTTCATTTTGCAGTCCTAGATCAGTGTGTTTTTGTGTCAGATTCTGAGATTCTATATTCCAAAGAAAGGAACAATGTCCTCGCAGCAAGGAGTCGCTATCAATGTTCGGGTATGATATCGGTATAGTGAGGTGACATTAGAAAGTTGTTGTGTGAATGTGTGTATCTGTCTCCTTCCCCCCTCATATCTTCTCACATTTTCTGTTCTATGGAGGTTCTTCTAACTTTCAACGCGTCCAATTCATCATTTGCAGCCTATGATTTCAACCCCTCAGAAATTTCTGACACCCTCCAATTAGTTCCGCTTCAACTCCGCCCCTTTTACTTTGTATAGCCGCCACCTGCCCAGAAACTCTCTCCATCATTCAGTTGTCATCAATTTCGTTTCAATTTCGTTTCCCTATCCCCCTCTGCCCTTTCAATTACGTTCCCTAGTATCATTTCTACTTTTCAGATGGCGGTGGAACTTGAGAGAACCGAGCAGGTTCGCTCGAAGATTCATATCAAGAATCCACTCTTAAGAAACGCCTT</canonical>
            <polymorphic>AATTTCAAAACTGCCTTTTACTGACTACTTACTGAAATACGTGCCAAATGCATTTTCTTGACATCCGCTTTTCCCTCGGGAATCCATTCTAAAACGGGGCGAGCTATGAACTCTAAGACCCGAGAGTCCGTGTGTTTTTCCTTTCCCTCCTTTTCCAGCTTGACTTCTTTCCCCTTCGATTTCTGGTCGTTTGCAGTTCATTGTGAAACAGAAAAAATATTCGGTCCGAGAAAAAAGAAAAAACCCCAAATTTGGGATGTTGATTCGGTGAAACAAGCATGATTGGTATCGTTGCTCTGTGCCCAAGTTTTATTAGCAAATCGCATGTTGTTTGAAACATTGTCAGCTTCCGTCCGCAGGGTTTGTGTTTCTCGTCTCGTTAAGGGAGTGGCAACTGATGCCTCCCAAAAAAAGCCAAGTTTTCTTGGGGACGGCGCTATCTGATGCCCCAAACCAAACGCCCCCATCTCTTTCATTTTGCAGTCCTAGATCAGTGTGTWTTTGTGTCAGATTCTGAGATTCTATATTCCAAAGAAAGGAACAATGTCCTCGCAGCAAGGAGTCGCTATCAATGTTCGGGTATGATATCGGTATAGTGAGGTGACATTAGAAAGTTGTTGTGTGAATGTGTGTATCTGTCTCCTTCCCCCCTCATATCTTCTCACATTTTCTGTTCTATGGAGGTTCTTCTAACTTTCAACGCGTCCAATTCATCATTTGCAGCCTATGATTTCAACCCCTCAGAAATTTCTGACACCCTCCAATTAGTTCCGCTTCAACTCCGCCCCTTTTACTTTGTATAGCCGCCACCTGCCCAGAAACTCTCTCCATCATTCAGTTGTCATCAATTTCGTTTCAATTTCGTTTCCCTATCCCCCTCTGCCCTTTCAATTACGTTCCCTAGTATCATTTCTACTTTTCAGATGGCGGTGGAACTTGAGAGAACCGAGCAGGTTCGCTCGAAGATTCATATCAAGAATCCACTCTTAAGAAACGCCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGTTTCTCGTCTCGTTAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTCTAATGTCACCTCACTATACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTGTTTCTCGTCTCGTTAAGGGAGTGGCAACTGATGCCTCCCAAAAAAAGCCAAGTTTTCTTGGGGACGGCGCTATCTGATGCCCCAAACCAAACGCCCCCATCTCTTTCATTTTGCAGTCCTAGATCAGTGTGTTTTTGTGTCAGATTCTGAGATTCTATATTCCAAAGAAAGGAACAATGTCCTCGCAGCAAGGAGTCGCTATCAATGTTCGGGTATGATATCGGTATAGTGAGGTGACATTAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TGTGTTTCTCGTCTCGTTAAGGGAGTGGCAACTGATGCCTCCCAAAAAAAGCCAAGTTTTCTTGGGGACGGCGCTATCTGATGCCCCAAACCAAACGCCCCCATCTCTTTCATTTTGCAGTCCTAGATCAGTGTGTWTTTGTGTCAGATTCTGAGATTCTATATTCCAAAGAAAGGAACAATGTCCTCGCAGCAAGGAGTCGCTATCAATGTTCGGGTATGATATCGGTATAGTGAGGTGACATTAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24819</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>314610</contig_pos>
        <strand>+</strand>
        <context>TCTTAAGAAA[C/T]GCCTTGTCCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCGAGCAGGTTCGCTCGAAGATTCATATCAAGAATCCACTCTTAAGAAA</left_flank>
        <right_flank>GCCTTGTCCGAATTCTTCGGAACCTTCATGCTTCTTTTCATCGGAATCGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTTTTTGTGTCAGATTCTGAGATTCTATATTCCAAAGAAAGGAACAATGTCCTCGCAGCAAGGAGTCGCTATCAATGTTCGGGTATGATATCGGTATAGTGAGGTGACATTAGAAAGTTGTTGTGTGAATGTGTGTATCTGTCTCCTTCCCCCCTCATATCTTCTCACATTTTCTGTTCTATGGAGGTTCTTCTAACTTTCAACGCGTCCAATTCATCATTTGCAGCCTATGATTTCAACCCCTCAGAAATTTCTGACACCCTCCAATTAGTTCCGCTTCAACTCCGCCCCTTTTACTTTGTATAGCCGCCACCTGCCCAGAAACTCTCTCCATCATTCAGTTGTCATCAATTTCGTTTCAATTTCGTTTCCCTATCCCCCTCTGCCCTTTCAATTACGTTCCCTAGTATCATTTCTACTTTTCAGATGGCGGTGGAACTTGAGAGAACCGAGCAGGTTCGCTCGAAGATTCATATCAAGAATCCACTCTTAAGAAACGCCTTGTCCGAATTCTTCGGAACCTTCATGCTTCTTTTCATCGGAATCGGAATCGTGATGCAATTCATTCTCTCGAATGAGAAGCTCAACACCTGGATCAACGTATGTCAAAATAGTCCTGCATGAGTTTCTTAGGGTTTTATTTCAGATCAATTTGGGATGGGGATTGGCCATCGCCTTCTGCGTCTACCTGTGCTCCAAGACATCCGGAGGACACTTCAACCCAGCTGTCTCCATTGCCTTCCTCACTCTTGGAAAGCTCCCACTCAAGGACTTCTTGGTCTACTGCGTCGTCCAAACCATCGGAGCCGCTCTTGGATCCCTCGCCGCCTTCGGACTTTACTACGGTATTTGTGATCATTACTGTAGCAATAATAAGTTTATTTTAGACCAAGTCAACAAGTTTGCCGGAGCTTACCGCACTATCATCGGAAGCAAAGCCACCGCTGCTTGCTTCTGCTCGTTCCCAGCATTCCATGTCTCCAACACCACTTGCTTCT</canonical>
            <polymorphic>GTGTTTTTGTGTCAGATTCTGAGATTCTATATTCCAAAGAAAGGAACAATGTCCTCGCAGCAAGGAGTCGCTATCAATGTTCGGGTATGATATCGGTATAGTGAGGTGACATTAGAAAGTTGTTGTGTGAATGTGTGTATCTGTCTCCTTCCCCCCTCATATCTTCTCACATTTTCTGTTCTATGGAGGTTCTTCTAACTTTCAACGCGTCCAATTCATCATTTGCAGCCTATGATTTCAACCCCTCAGAAATTTCTGACACCCTCCAATTAGTTCCGCTTCAACTCCGCCCCTTTTACTTTGTATAGCCGCCACCTGCCCAGAAACTCTCTCCATCATTCAGTTGTCATCAATTTCGTTTCAATTTCGTTTCCCTATCCCCCTCTGCCCTTTCAATTACGTTCCCTAGTATCATTTCTACTTTTCAGATGGCGGTGGAACTTGAGAGAACCGAGCAGGTTCGCTCGAAGATTCATATCAAGAATCCACTCTTAAGAAAYGCCTTGTCCGAATTCTTCGGAACCTTCATGCTTCTTTTCATCGGAATCGGAATCGTGATGCAATTCATTCTCTCGAATGAGAAGCTCAACACCTGGATCAACGTATGTCAAAATAGTCCTGCATGAGTTTCTTAGGGTTTTATTTCAGATCAATTTGGGATGGGGATTGGCCATCGCCTTCTGCGTCTACCTGTGCTCCAAGACATCCGGAGGACACTTCAACCCAGCTGTCTCCATTGCCTTCCTCACTCTTGGAAAGCTCCCACTCAAGGACTTCTTGGTCTACTGCGTCGTCCAAACCATCGGAGCCGCTCTTGGATCCCTCGCCGCCTTCGGACTTTACTACGGTATTTGTGATCATTACTGTAGCAATAATAAGTTTATTTTAGACCAAGTCAACAAGTTTGCCGGAGCTTACCGCACTATCATCGGAAGCAAAGCCACCGCTGCTTGCTTCTGCTCGTTCCCAGCATTCCATGTCTCCAACACCACTTGCTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTCCCTAGTATCATTTCTACTT</pcr_primer_p1>
		<pcr_primer_p2>TCTGAAATAAAACCCTAAGAAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTTCCCTAGTATCATTTCTACTTTTCAGATGGCGGTGGAACTTGAGAGAACCGAGCAGGTTCGCTCGAAGATTCATATCAAGAATCCACTCTTAAGAAACGCCTTGTCCGAATTCTTCGGAACCTTCATGCTTCTTTTCATCGGAATCGGAATCGTGATGCAATTCATTCTCTCGAATGAGAAGCTCAACACCTGGATCAACGTATGTCAAAATAGTCCTGCATGAGTTTCTTAGGGTTTTATTTCAGA</canonical_amplicon>
		<polymorphic_amplicon>CGTTCCCTAGTATCATTTCTACTTTTCAGATGGCGGTGGAACTTGAGAGAACCGAGCAGGTTCGCTCGAAGATTCATATCAAGAATCCACTCTTAAGAAAYGCCTTGTCCGAATTCTTCGGAACCTTCATGCTTCTTTTCATCGGAATCGGAATCGTGATGCAATTCATTCTCTCGAATGAGAAGCTCAACACCTGGATCAACGTATGTCAAAATAGTCCTGCATGAGTTTCTTAGGGTTTTATTTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24820</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>334649</contig_pos>
        <strand>+</strand>
        <context>CAAGATATTT[A/G]AAATGACGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGTGCAACCATTCAAAAGACGAGACAGGCTCCTTTTTCTCAAGATATTT</left_flank>
        <right_flank>AAATGACGGAAAAGAAGAAGAAAAAGAAAGGAAAAAGGTCTCTGTCAACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTGTGATTGAAATGTTAATCTTGGTCTTTTTTACACCCTCCGAAATGTGATCGGAAACTTGACATCCGAACTCCAGACTCCGGAAAATGATCAAAATGACCCTGATAACTCTGTTTTTCAAACAAACATTTTGAAGACAGCGATTTAGAAATTTAAAAAATCAATTTTCCTAGCTCCCAAAAAATTCTTGAAATTTAAAGTACACTCTAAATAGACTGAACGATCATTAACCGTCGCTCCTCTAATCAATCATTATAATAATTGTATGTGTGCATTTTGATAACCACCACCAACCCATCCAACAATCAAGTTTTTTCGCCGCTGCTGCAAATATAGTTCAACAAAAGCAAAAAAAGGAACTACGTATTTCTTTGAGTGAAGAAAAATGATAATTGCACGTTGGTTGAAGCGGGAAGAAAGAGGGAAAAGGAATTATTCACGATGAGGTTGTGCAACCATTCAAAAGACGAGACAGGCTCCTTTTTCTCAAGATATTTAAAATGACGGAAAAGAAGAAGAAAAAGAAAGGAAAAAGGTCTCTGTCAACCTTTTTGGAGAGACAAAGGGCGGATAGGGGTCCCCAAAAAAAAAAGACCAAATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAAGTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGGGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATTAGGTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAATTCTGATCAAAAAGAAATCATTAAGAAATCATCGAGATTAAGAAATCGTCGAGATAAGAGAGAAAAAAACGAGTCTAATTATGAAGATGAAAAGAAATTGAAAAAAAATGAGAGAAAGAAGAAAAAGTGCATGAGTATGCTTACTTTTTGAACAGATAGGAAGAGCAACTGTCGTTTGGGTACA</canonical>
            <polymorphic>ATCTGTGATTGAAATGTTAATCTTGGTCTTTTTTACACCCTCCGAAATGTGATCGGAAACTTGACATCCGAACTCCAGACTCCGGAAAATGATCAAAATGACCCTGATAACTCTGTTTTTCAAACAAACATTTTGAAGACAGCGATTTAGAAATTTAAAAAATCAATTTTCCTAGCTCCCAAAAAATTCTTGAAATTTAAAGTACACTCTAAATAGACTGAACGATCATTAACCGTCGCTCCTCTAATCAATCATTATAATAATTGTATGTGTGCATTTTGATAACCACCACCAACCCATCCAACAATCAAGTTTTTTCGCCGCTGCTGCAAATATAGTTCAACAAAAGCAAAAAAAGGAACTACGTATTTCTTTGAGTGAAGAAAAATGATAATTGCACGTTGGTTGAAGCGGGAAGAAAGAGGGAAAAGGAATTATTCACGATGAGGTTGTGCAACCATTCAAAAGACGAGACAGGCTCCTTTTTCTCAAGATATTTRAAATGACGGAAAAGAAGAAGAAAAAGAAAGGAAAAAGGTCTCTGTCAACCTTTTTGGAGAGACAAAGGGCGGATAGGGGTCCCCAAAAAAAAAAGACCAAATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAAGTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGGGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATTAGGTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAATTCTGATCAAAAAGAAATCATTAAGAAATCATCGAGATTAAGAAATCGTCGAGATAAGAGAGAAAAAAACGAGTCTAATTATGAAGATGAAAAGAAATTGAAAAAAAATGAGAGAAAGAAGAAAAAGTGCATGAGTATGCTTACTTTTTGAACAGATAGGAAGAGCAACTGTCGTTTGGGTACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 301 156 42</canonical_bands>
                <polymorphic_bands>802 156 42</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>339 269 146 138 42 32 17 17</canonical_bands>
                <polymorphic_bands>608 146 138 42 32 17 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTGCAAATATAGTTCAACAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTTGTCTCTCCAAAAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GCTGCAAATATAGTTCAACAAAAGCAAAAAAAGGAACTACGTATTTCTTTGAGTGAAGAAAAATGATAATTGCACGTTGGTTGAAGCGGGAAGAAAGAGGGAAAAGGAATTATTCACGATGAGGTTGTGCAACCATTCAAAAGACGAGACAGGCTCCTTTTTCTCAAGATATTTAAAATGACGGAAAAGAAGAAGAAAAAGAAAGGAAAAAGGTCTCTGTCAACCTTTTTGGAGAGACAAAG</canonical_amplicon>
		<polymorphic_amplicon>GCTGCAAATATAGTTCAACAAAAGCAAAAAAAGGAACTACGTATTTCTTTGAGTGAAGAAAAATGATAATTGCACGTTGGTTGAAGCGGGAAGAAAGAGGGAAAAGGAATTATTCACGATGAGGTTGTGCAACCATTCAAAAGACGAGACAGGCTCCTTTTTCTCAAGATATTTRAAATGACGGAAAAGAAGAAGAAAAAGAAAGGAAAAAGGTCTCTGTCAACCTTTTTGGAGAGACAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24821</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>334870</contig_pos>
        <strand></strand>
        <context>GAGGAGAGAG[G/A]GAGGGAGGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAGTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAG</left_flank>
        <right_flank>GAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATTAGGTCCT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGATCATTAACCGTCGCTCCTCTAATCAATCATTATAATAATTGTATGTGTGCATTTTGATAACCACCACCAACCCATCCAACAATCAAGTTTTTTCGCCGCTGCTGCAAATATAGTTCAACAAAAGCAAAAAAAGGAACTACGTATTTCTTTGAGTGAAGAAAAATGATAATTGCACGTTGGTTGAAGCGGGAAGAAAGAGGGAAAAGGAATTATTCACGATGAGGTTGTGCAACCATTCAAAAGACGAGACAGGCTCCTTTTTCTCAAGATATTTAAAATGACGGAAAAGAAGAAGAAAAAGAAAGGAAAAAGGTCTCTGTCAACCTTTTTGGAGAGACAAAGGGCGGATAGGGGTCCCCAAAAAAAAAAGACCAAATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAAGTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGGGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATTAGGTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAATTCTGATCAAAAAGAAATCATTAAGAAATCATCGAGATTAAGAAATCGTCGAGATAAGAGAGAAAAAAACGAGTCTAATTATGAAGATGAAAAGAAATTGAAAAAAAATGAGAGAAAGAAGAAAAAGTGCATGAGTATGCTTACTTTTTGAACAGATAGGAAGAGCAACTGTCGTTTGGGTACATTTTTGAGTGCAAAACAGAGGGAGAAAAGAAAAATGACTAGACTTAAAAAATGGGGAGGAAGGTATCAATCATAGCAGTTAAGGAAATCTAGAGAGAGAATTTTTCTGAGTCTGAATACAAATTGGGCAGGATTATGTTCATTTTAAAACACTTTGAATCCGAAAAAATACCGGAATTCATGTTTTCAATAGACTTTCGATTTCCAAAAAAAAAAGAATAG</canonical>
            <polymorphic>ACGATCATTAACCGTCGCTCCTCTAATCAATCATTATAATAATTGTATGTGTGCATTTTGATAACCACCACCAACCCATCCAACAATCAAGTTTTTTCGCCGCTGCTGCAAATATAGTTCAACAAAAGCAAAAAAAGGAACTACGTATTTCTTTGAGTGAAGAAAAATGATAATTGCACGTTGGTTGAAGCGGGAAGAAAGAGGGAAAAGGAATTATTCACGATGAGGTTGTGCAACCATTCAAAAGACGAGACAGGCTCCTTTTTCTCAAGATATTTAAAATGACGGAAAAGAAGAAGAAAAAGAAAGGAAAAAGGTCTCTGTCAACCTTTTTGGAGAGACAAAGGGCGGATAGGGGTCCCCAAAAAAAAAAGACCAAATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAAGTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGRGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATTAGGTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAATTCTGATCAAAAAGAAATCATTAAGAAATCATCGAGATTAAGAAATCGTCGAGATAAGAGAGAAAAAAACGAGTCTAATTATGAAGATGAAAAGAAATTGAAAAAAAATGAGAGAAAGAAGAAAAAGTGCATGAGTATGCTTACTTTTTGAACAGATAGGAAGAGCAACTGTCGTTTGGGTACATTTTTGAGTGCAAAACAGAGGGAGAAAAGAAAAATGACTAGACTTAAAAAATGGGGAGGAAGGTATCAATCATAGCAGTTAAGGAAATCTAGAGAGAGAATTTTTCTGAGTCTGAATACAAATTGGGCAGGATTATGTTCATTTTAAAACACTTTGAATCCGAAAAAATACCGGAATTCATGTTTTCAATAGACTTTCGATTTCCAAAAAAAAAAGAATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTGACAGAGACGAAAGTAGAG</pcr_primer_p1>
		<pcr_primer_p2>TCGATGATTTCTTAATGATTTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAAGTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGGGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATTAGGTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAATTCTGATCAAAAAGAAATCATTAAGAAATCATCGA</canonical_amplicon>
		<polymorphic_amplicon>ATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAAGTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGRGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATTAGGTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAATTCTGATCAAAAAGAAATCATTAAGAAATCATCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24822</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>334915</contig_pos>
        <strand>+</strand>
        <context>GAATCCATTA[A/G]GTCCTCGGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGAGGGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATTA</left_flank>
        <right_flank>GTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGTGTGCATTTTGATAACCACCACCAACCCATCCAACAATCAAGTTTTTTCGCCGCTGCTGCAAATATAGTTCAACAAAAGCAAAAAAAGGAACTACGTATTTCTTTGAGTGAAGAAAAATGATAATTGCACGTTGGTTGAAGCGGGAAGAAAGAGGGAAAAGGAATTATTCACGATGAGGTTGTGCAACCATTCAAAAGACGAGACAGGCTCCTTTTTCTCAAGATATTTAAAATGACGGAAAAGAAGAAGAAAAAGAAAGGAAAAAGGTCTCTGTCAACCTTTTTGGAGAGACAAAGGGCGGATAGGGGTCCCCAAAAAAAAAAGACCAAATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAAGTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGGGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATTAGGTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAATTCTGATCAAAAAGAAATCATTAAGAAATCATCGAGATTAAGAAATCGTCGAGATAAGAGAGAAAAAAACGAGTCTAATTATGAAGATGAAAAGAAATTGAAAAAAAATGAGAGAAAGAAGAAAAAGTGCATGAGTATGCTTACTTTTTGAACAGATAGGAAGAGCAACTGTCGTTTGGGTACATTTTTGAGTGCAAAACAGAGGGAGAAAAGAAAAATGACTAGACTTAAAAAATGGGGAGGAAGGTATCAATCATAGCAGTTAAGGAAATCTAGAGAGAGAATTTTTCTGAGTCTGAATACAAATTGGGCAGGATTATGTTCATTTTAAAACACTTTGAATCCGAAAAAATACCGGAATTCATGTTTTCAATAGACTTTCGATTTCCAAAAAAAAAAGAATAGTTGAAAAAAATAACTGAACCCCATCAACTACAAACGACGCGATTT</canonical>
            <polymorphic>TATGTGTGCATTTTGATAACCACCACCAACCCATCCAACAATCAAGTTTTTTCGCCGCTGCTGCAAATATAGTTCAACAAAAGCAAAAAAAGGAACTACGTATTTCTTTGAGTGAAGAAAAATGATAATTGCACGTTGGTTGAAGCGGGAAGAAAGAGGGAAAAGGAATTATTCACGATGAGGTTGTGCAACCATTCAAAAGACGAGACAGGCTCCTTTTTCTCAAGATATTTAAAATGACGGAAAAGAAGAAGAAAAAGAAAGGAAAAAGGTCTCTGTCAACCTTTTTGGAGAGACAAAGGGCGGATAGGGGTCCCCAAAAAAAAAAGACCAAATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAAGTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGGGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATTARGTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAATTCTGATCAAAAAGAAATCATTAAGAAATCATCGAGATTAAGAAATCGTCGAGATAAGAGAGAAAAAAACGAGTCTAATTATGAAGATGAAAAGAAATTGAAAAAAAATGAGAGAAAGAAGAAAAAGTGCATGAGTATGCTTACTTTTTGAACAGATAGGAAGAGCAACTGTCGTTTGGGTACATTTTTGAGTGCAAAACAGAGGGAGAAAAGAAAAATGACTAGACTTAAAAAATGGGGAGGAAGGTATCAATCATAGCAGTTAAGGAAATCTAGAGAGAGAATTTTTCTGAGTCTGAATACAAATTGGGCAGGATTATGTTCATTTTAAAACACTTTGAATCCGAAAAAATACCGGAATTCATGTTTTCAATAGACTTTCGATTTCCAAAAAAAAAAGAATAGTTGAAAAAAATAACTGAACCCCATCAACTACAAACGACGCGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>500 312 188</canonical_bands>
                <polymorphic_bands>688 312</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 312 188</canonical_bands>
                <polymorphic_bands>688 312</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>500 312 188</canonical_bands>
                <polymorphic_bands>688 312</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>500 312 188</canonical_bands>
                <polymorphic_bands>688 312</polymorphic_bands>
            </assay>
            <assay>
                <site>AGGWCCT</site>
                <isoschizomers>
                    <enzyme>Sse8647I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTGACAGAGACGAAAGTAGAG</pcr_primer_p1>
		<pcr_primer_p2>TCGATGATTTCTTAATGATTTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAAGTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGGGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATTAGGTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAATTCTGATCAAAAAGAAATCATTAAGAAATCATCGA</canonical_amplicon>
		<polymorphic_amplicon>ATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAAGTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGGGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATTARGTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAATTCTGATCAAAAAGAAATCATTAAGAAATCATCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24823</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>335029</contig_pos>
        <strand></strand>
        <context>ATAAGAGAGA[A/G]AAAAACGAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAATCATTAAGAAATCATCGAGATTAAGAAATCGTCGAGATAAGAGAGA</left_flank>
        <right_flank>AAAAACGAGTCTAATTATGAAGATGAAAAGAAATTGAAAAAAAATGAGAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAAAATGATAATTGCACGTTGGTTGAAGCGGGAAGAAAGAGGGAAAAGGAATTATTCACGATGAGGTTGTGCAACCATTCAAAAGACGAGACAGGCTCCTTTTTCTCAAGATATTTAAAATGACGGAAAAGAAGAAGAAAAAGAAAGGAAAAAGGTCTCTGTCAACCTTTTTGGAGAGACAAAGGGCGGATAGGGGTCCCCAAAAAAAAAAGACCAAATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAAGTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGGGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATTAGGTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAATTCTGATCAAAAAGAAATCATTAAGAAATCATCGAGATTAAGAAATCGTCGAGATAAGAGAGAAAAAAACGAGTCTAATTATGAAGATGAAAAGAAATTGAAAAAAAATGAGAGAAAGAAGAAAAAGTGCATGAGTATGCTTACTTTTTGAACAGATAGGAAGAGCAACTGTCGTTTGGGTACATTTTTGAGTGCAAAACAGAGGGAGAAAAGAAAAATGACTAGACTTAAAAAATGGGGAGGAAGGTATCAATCATAGCAGTTAAGGAAATCTAGAGAGAGAATTTTTCTGAGTCTGAATACAAATTGGGCAGGATTATGTTCATTTTAAAACACTTTGAATCCGAAAAAATACCGGAATTCATGTTTTCAATAGACTTTCGATTTCCAAAAAAAAAAGAATAGTTGAAAAAAATAACTGAACCCCATCAACTACAAACGACGCGATTTCCCGGGCCATATCATAAACGCACACATATAAAAATTTTGTACTAACATTTAAAAAGCTTGGAAACCTCTTTGCAAAAGTCGCCAGTGAACAAATATGACCCCCAACCTGTCATA</canonical>
            <polymorphic>AAGAAAAATGATAATTGCACGTTGGTTGAAGCGGGAAGAAAGAGGGAAAAGGAATTATTCACGATGAGGTTGTGCAACCATTCAAAAGACGAGACAGGCTCCTTTTTCTCAAGATATTTAAAATGACGGAAAAGAAGAAGAAAAAGAAAGGAAAAAGGTCTCTGTCAACCTTTTTGGAGAGACAAAGGGCGGATAGGGGTCCCCAAAAAAAAAAGACCAAATGTGACAGAGACGAAAGTAGAGCTATATATAAATTATCATAGAATATTCTACAGAAAAAGCAAAAGAAAAAGTACTAGGTCACCAGATATGACCAATCGGACAAAAATAGAGGAGAGAGGGAGGGAGGAATAGAGGGAGGAGGACTAAAAATAGGAATCCATTAGGTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAATTCTGATCAAAAAGAAATCATTAAGAAATCATCGAGATTAAGAAATCGTCGAGATAAGAGAGARAAAAACGAGTCTAATTATGAAGATGAAAAGAAATTGAAAAAAAATGAGAGAAAGAAGAAAAAGTGCATGAGTATGCTTACTTTTTGAACAGATAGGAAGAGCAACTGTCGTTTGGGTACATTTTTGAGTGCAAAACAGAGGGAGAAAAGAAAAATGACTAGACTTAAAAAATGGGGAGGAAGGTATCAATCATAGCAGTTAAGGAAATCTAGAGAGAGAATTTTTCTGAGTCTGAATACAAATTGGGCAGGATTATGTTCATTTTAAAACACTTTGAATCCGAAAAAATACCGGAATTCATGTTTTCAATAGACTTTCGATTTCCAAAAAAAAAAGAATAGTTGAAAAAAATAACTGAACCCCATCAACTACAAACGACGCGATTTCCCGGGCCATATCATAAACGCACACATATAAAAATTTTGTACTAACATTTAAAAAGCTTGGAAACCTCTTTGCAAAAGTCGCCAGTGAACAAATATGACCCCCAACCTGTCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAGGGAGGAGGACTAAAAATA</pcr_primer_p1>
		<pcr_primer_p2>TCCTATCTGTTCAAAAAGTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TAGAGGGAGGAGGACTAAAAATAGGAATCCATTAGGTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAATTCTGATCAAAAAGAAATCATTAAGAAATCATCGAGATTAAGAAATCGTCGAGATAAGAGAGAAAAAAACGAGTCTAATTATGAAGATGAAAAGAAATTGAAAAAAAATGAGAGAAAGAAGAAAAAGTGCATGAGTATGCTTACTTTTTGAACAGATAGGA</canonical_amplicon>
		<polymorphic_amplicon>TAGAGGGAGGAGGACTAAAAATAGGAATCCATTAGGTCCTCGGAGTAGACAAATGGGTGGCAGCAAAACGCAATTATGCGTACAATTCTGATCAAAAAGAAATCATTAAGAAATCATCGAGATTAAGAAATCGTCGAGATAAGAGAGARAAAAACGAGTCTAATTATGAAGATGAAAAGAAATTGAAAAAAAATGAGAGAAAGAAGAAAAAGTGCATGAGTATGCTTACTTTTTGAACAGATAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24824</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>359543</contig_pos>
        <strand></strand>
        <context>AATACGACCA[A/T]ATTTTAATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCTTTTTCCTGATTTCCTGTTGTTTTCGGTTAGTATCATCAATACGACCA</left_flank>
        <right_flank>ATTTTAATTGTCTCTTCTCTTTCTCTCTTCTTTAGTAGCCGTGCGATATT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATATTTTAGCTGATAAATTGTTAATCGTAATATCAACAGTATTTTACGAGTTGACAGATTTTTGACATCTTTCATATGAATCAAGATCATTGAATTCAAGATACAGGTATGGGCGGGCTTCTATTAGTGGAGTTACTGCAGTTTTATGAACGAAAAATTGTTTTCACAGAACGTTTAATTCAGTGATTAAAATTTTAAACTAGCAAAATTTGTTCAACATGGTCAATATCTGAATTCTCATCTCTGAATTTCTTATTATATCAAGCAAAAACATGTGTACTGTTTTCTTTTTCAATCGCACCCATTTCTCCATTGACCAATTGATATATTTCGAACCGCCTTGATTTTAGTACTAGACAATAAATATAATATTTTCAGAAAGTTATTGTTCACTACCATCCCTCTTAACAACCCTCCACCAATCATTAATATCAAATTTCCTGATACCTTTTTCCTGATTTCCTGTTGTTTTCGGTTAGTATCATCAATACGACCAAATTTTAATTGTCTCTTCTCTTTCTCTCTTCTTTAGTAGCCGTGCGATATTTCCGGTCACAAACGGTTGATGAGATGAGCAACAATAATATCTGTTTTCCACAAATGGGCCGACAGATGCCGGCGGCCATTACTCGCGTGTTCATAAAGGGCCGCTCACCGAACAATACTGTTATTAGCGCTACCGAACACACTCATCTGGAAAATGCACTAATCGAAAAAAGGCACTGCATTTCAAAGCATGAATGACTAATGAGAGACACACCGTTATGGACAAGTAGCCCAAAAAAAATTAGGGGTAAAGTGGCAATTAGTGGATAGGTCGTTACCCAAGTTTGACTTTTTTGTAATACTTCAGAACATCGAAAATCTACATACAGTAGTTTTACTCTTTTTGTCGGAAGATTTTTAAATTGAAGTGCGCGAAATTGGTGGAATTGTTCCATTCACCATCCGCGCCACCGCCAACAAAACACAAGGACAACCAAGAGAGAAGGAATTT</canonical>
            <polymorphic>AAAATATTTTAGCTGATAAATTGTTAATCGTAATATCAACAGTATTTTACGAGTTGACAGATTTTTGACATCTTTCATATGAATCAAGATCATTGAATTCAAGATACAGGTATGGGCGGGCTTCTATTAGTGGAGTTACTGCAGTTTTATGAACGAAAAATTGTTTTCACAGAACGTTTAATTCAGTGATTAAAATTTTAAACTAGCAAAATTTGTTCAACATGGTCAATATCTGAATTCTCATCTCTGAATTTCTTATTATATCAAGCAAAAACATGTGTACTGTTTTCTTTTTCAATCGCACCCATTTCTCCATTGACCAATTGATATATTTCGAACCGCCTTGATTTTAGTACTAGACAATAAATATAATATTTTCAGAAAGTTATTGTTCACTACCATCCCTCTTAACAACCCTCCACCAATCATTAATATCAAATTTCCTGATACCTTTTTCCTGATTTCCTGTTGTTTTCGGTTAGTATCATCAATACGACCAWATTTTAATTGTCTCTTCTCTTTCTCTCTTCTTTAGTAGCCGTGCGATATTTCCGGTCACAAACGGTTGATGAGATGAGCAACAATAATATCTGTTTTCCACAAATGGGCCGACAGATGCCGGCGGCCATTACTCGCGTGTTCATAAAGGGCCGCTCACCGAACAATACTGTTATTAGCGCTACCGAACACACTCATCTGGAAAATGCACTAATCGAAAAAAGGCACTGCATTTCAAAGCATGAATGACTAATGAGAGACACACCGTTATGGACAAGTAGCCCAAAAAAAATTAGGGGTAAAGTGGCAATTAGTGGATAGGTCGTTACCCAAGTTTGACTTTTTTGTAATACTTCAGAACATCGAAAATCTACATACAGTAGTTTTACTCTTTTTGTCGGAAGATTTTTAAATTGAAGTGCGCGAAATTGGTGGAATTGTTCCATTCACCATCCGCGCCACCGCCAACAAAACACAAGGACAACCAAGAGAGAAGGAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>496 188 98 95 62 26 16 14 5</canonical_bands>
                <polymorphic_bands>558 188 98 95 26 16 14 5</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>283 116 103 77 72 63 62 62 26 21 18 18 16 15 14 14 9 6 5</canonical_bands>
                <polymorphic_bands>283 116 103 77 72 68 63 62 26 21 18 18 16 15 14 14 9 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAAATTTCCTGATACCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCGGTAGCGCTAATAACAGTA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ATCAAATTTCCTGATACCTTTTTCCTGATTTCCTGTTGTTTTCGGTTAGTATCATCAATACGACCAAATTTTAATTGTCTCTTCTCTTTCTCTCTTCTTTAGTAGCCGTGCGATATTTCCGGTCACAAACGGTTGATGAGATGAGCAACAATAATATCTGTTTTCCACAAATGGGCCGACAGATGCCGGCGGCCATTACTCGCGTGTTCATAAAGGGCCGCTCACCGAACAATACTGTTATTAGCGCTACCGA</canonical_amplicon>
		<polymorphic_amplicon>ATCAAATTTCCTGATACCTTTTTCCTGATTTCCTGTTGTTTTCGGTTAGTATCATCAATACGACCAWATTTTAATTGTCTCTTCTCTTTCTCTCTTCTTTAGTAGCCGTGCGATATTTCCGGTCACAAACGGTTGATGAGATGAGCAACAATAATATCTGTTTTCCACAAATGGGCCGACAGATGCCGGCGGCCATTACTCGCGTGTTCATAAAGGGCCGCTCACCGAACAATACTGTTATTAGCGCTACCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24825</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>359569</contig_pos>
        <strand></strand>
        <context>TCTCTTTCTC[T/G]CTTCTTTWGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CGGTTAGTATCATCAATACGACCAAATTTTAATTGTCTCTTCTCTTTCTC</left_flank>
        <right_flank>CTTCTTTAGTAGCCGTGCGATATTTCCGGTCACAAACGGTTGATGAGATG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGTAATATCAACAGTATTTTACGAGTTGACAGATTTTTGACATCTTTCATATGAATCAAGATCATTGAATTCAAGATACAGGTATGGGCGGGCTTCTATTAGTGGAGTTACTGCAGTTTTATGAACGAAAAATTGTTTTCACAGAACGTTTAATTCAGTGATTAAAATTTTAAACTAGCAAAATTTGTTCAACATGGTCAATATCTGAATTCTCATCTCTGAATTTCTTATTATATCAAGCAAAAACATGTGTACTGTTTTCTTTTTCAATCGCACCCATTTCTCCATTGACCAATTGATATATTTCGAACCGCCTTGATTTTAGTACTAGACAATAAATATAATATTTTCAGAAAGTTATTGTTCACTACCATCCCTCTTAACAACCCTCCACCAATCATTAATATCAAATTTCCTGATACCTTTTTCCTGATTTCCTGTTGTTTTCGGTTAGTATCATCAATACGACCAAATTTTAATTGTCTCTTCTCTTTCTCTCTTCTTTAGTAGCCGTGCGATATTTCCGGTCACAAACGGTTGATGAGATGAGCAACAATAATATCTGTTTTCCACAAATGGGCCGACAGATGCCGGCGGCCATTACTCGCGTGTTCATAAAGGGCCGCTCACCGAACAATACTGTTATTAGCGCTACCGAACACACTCATCTGGAAAATGCACTAATCGAAAAAAGGCACTGCATTTCAAAGCATGAATGACTAATGAGAGACACACCGTTATGGACAAGTAGCCCAAAAAAAATTAGGGGTAAAGTGGCAATTAGTGGATAGGTCGTTACCCAAGTTTGACTTTTTTGTAATACTTCAGAACATCGAAAATCTACATACAGTAGTTTTACTCTTTTTGTCGGAAGATTTTTAAATTGAAGTGCGCGAAATTGGTGGAATTGTTCCATTCACCATCCGCGCCACCGCCAACAAAACACAAGGACAACCAAGAGAGAAGGAATTTGTCCGGATATTTGGCAGCCGTGACAA</canonical>
            <polymorphic>ATCGTAATATCAACAGTATTTTACGAGTTGACAGATTTTTGACATCTTTCATATGAATCAAGATCATTGAATTCAAGATACAGGTATGGGCGGGCTTCTATTAGTGGAGTTACTGCAGTTTTATGAACGAAAAATTGTTTTCACAGAACGTTTAATTCAGTGATTAAAATTTTAAACTAGCAAAATTTGTTCAACATGGTCAATATCTGAATTCTCATCTCTGAATTTCTTATTATATCAAGCAAAAACATGTGTACTGTTTTCTTTTTCAATCGCACCCATTTCTCCATTGACCAATTGATATATTTCGAACCGCCTTGATTTTAGTACTAGACAATAAATATAATATTTTCAGAAAGTTATTGTTCACTACCATCCCTCTTAACAACCCTCCACCAATCATTAATATCAAATTTCCTGATACCTTTTTCCTGATTTCCTGTTGTTTTCGGTTAGTATCATCAATACGACCAAATTTTAATTGTCTCTTCTCTTTCTCKCTTCTTTAGTAGCCGTGCGATATTTCCGGTCACAAACGGTTGATGAGATGAGCAACAATAATATCTGTTTTCCACAAATGGGCCGACAGATGCCGGCGGCCATTACTCGCGTGTTCATAAAGGGCCGCTCACCGAACAATACTGTTATTAGCGCTACCGAACACACTCATCTGGAAAATGCACTAATCGAAAAAAGGCACTGCATTTCAAAGCATGAATGACTAATGAGAGACACACCGTTATGGACAAGTAGCCCAAAAAAAATTAGGGGTAAAGTGGCAATTAGTGGATAGGTCGTTACCCAAGTTTGACTTTTTTGTAATACTTCAGAACATCGAAAATCTACATACAGTAGTTTTACTCTTTTTGTCGGAAGATTTTTAAATTGAAGTGCGCGAAATTGGTGGAATTGTTCCATTCACCATCCGCGCCACCGCCAACAAAACACAAGGACAACCAAGAGAGAAGGAATTTGTCCGGATATTTGGCAGCCGTGACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTTGTTTTCGGTTAGTATCAT</pcr_primer_p1>
		<pcr_primer_p2>ATTAGTGCATTTTCCAGATGAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTGTTGTTTTCGGTTAGTATCATCAATACGACCAAATTTTAATTGTCTCTTCTCTTTCTCTCTTCTTTAGTAGCCGTGCGATATTTCCGGTCACAAACGGTTGATGAGATGAGCAACAATAATATCTGTTTTCCACAAATGGGCCGACAGATGCCGGCGGCCATTACTCGCGTGTTCATAAAGGGCCGCTCACCGAACAATACTGTTATTAGCGCTACCGAACACACTCATCTGGAAAATGCACTAAT</canonical_amplicon>
		<polymorphic_amplicon>CTGTTGTTTTCGGTTAGTATCATCAATACGACCAAATTTTAATTGTCTCTTCTCTTTCTCKCTTCTTTAGTAGCCGTGCGATATTTCCGGTCACAAACGGTTGATGAGATGAGCAACAATAATATCTGTTTTCCACAAATGGGCCGACAGATGCCGGCGGCCATTACTCGCGTGTTCATAAAGGGCCGCTCACCGAACAATACTGTTATTAGCGCTACCGAACACACTCATCTGGAAAATGCACTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24826</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>359577</contig_pos>
        <strand></strand>
        <context>TCKCTTCTTT[A/T]GTAGCCGTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCATCAATACGACCAAATTTTAATTGTCTCTTCTCTTTCTCTCTTCTTT</left_flank>
        <right_flank>GTAGCCGTGCGATATTTCCGGTCACAAACGGTTGATGAGATGAGCAACAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAACAGTATTTTACGAGTTGACAGATTTTTGACATCTTTCATATGAATCAAGATCATTGAATTCAAGATACAGGTATGGGCGGGCTTCTATTAGTGGAGTTACTGCAGTTTTATGAACGAAAAATTGTTTTCACAGAACGTTTAATTCAGTGATTAAAATTTTAAACTAGCAAAATTTGTTCAACATGGTCAATATCTGAATTCTCATCTCTGAATTTCTTATTATATCAAGCAAAAACATGTGTACTGTTTTCTTTTTCAATCGCACCCATTTCTCCATTGACCAATTGATATATTTCGAACCGCCTTGATTTTAGTACTAGACAATAAATATAATATTTTCAGAAAGTTATTGTTCACTACCATCCCTCTTAACAACCCTCCACCAATCATTAATATCAAATTTCCTGATACCTTTTTCCTGATTTCCTGTTGTTTTCGGTTAGTATCATCAATACGACCAAATTTTAATTGTCTCTTCTCTTTCTCTCTTCTTTAGTAGCCGTGCGATATTTCCGGTCACAAACGGTTGATGAGATGAGCAACAATAATATCTGTTTTCCACAAATGGGCCGACAGATGCCGGCGGCCATTACTCGCGTGTTCATAAAGGGCCGCTCACCGAACAATACTGTTATTAGCGCTACCGAACACACTCATCTGGAAAATGCACTAATCGAAAAAAGGCACTGCATTTCAAAGCATGAATGACTAATGAGAGACACACCGTTATGGACAAGTAGCCCAAAAAAAATTAGGGGTAAAGTGGCAATTAGTGGATAGGTCGTTACCCAAGTTTGACTTTTTTGTAATACTTCAGAACATCGAAAATCTACATACAGTAGTTTTACTCTTTTTGTCGGAAGATTTTTAAATTGAAGTGCGCGAAATTGGTGGAATTGTTCCATTCACCATCCGCGCCACCGCCAACAAAACACAAGGACAACCAAGAGAGAAGGAATTTGTCCGGATATTTGGCAGCCGTGACAAACGACTGC</canonical>
            <polymorphic>ATCAACAGTATTTTACGAGTTGACAGATTTTTGACATCTTTCATATGAATCAAGATCATTGAATTCAAGATACAGGTATGGGCGGGCTTCTATTAGTGGAGTTACTGCAGTTTTATGAACGAAAAATTGTTTTCACAGAACGTTTAATTCAGTGATTAAAATTTTAAACTAGCAAAATTTGTTCAACATGGTCAATATCTGAATTCTCATCTCTGAATTTCTTATTATATCAAGCAAAAACATGTGTACTGTTTTCTTTTTCAATCGCACCCATTTCTCCATTGACCAATTGATATATTTCGAACCGCCTTGATTTTAGTACTAGACAATAAATATAATATTTTCAGAAAGTTATTGTTCACTACCATCCCTCTTAACAACCCTCCACCAATCATTAATATCAAATTTCCTGATACCTTTTTCCTGATTTCCTGTTGTTTTCGGTTAGTATCATCAATACGACCAAATTTTAATTGTCTCTTCTCTTTCTCTCTTCTTTWGTAGCCGTGCGATATTTCCGGTCACAAACGGTTGATGAGATGAGCAACAATAATATCTGTTTTCCACAAATGGGCCGACAGATGCCGGCGGCCATTACTCGCGTGTTCATAAAGGGCCGCTCACCGAACAATACTGTTATTAGCGCTACCGAACACACTCATCTGGAAAATGCACTAATCGAAAAAAGGCACTGCATTTCAAAGCATGAATGACTAATGAGAGACACACCGTTATGGACAAGTAGCCCAAAAAAAATTAGGGGTAAAGTGGCAATTAGTGGATAGGTCGTTACCCAAGTTTGACTTTTTTGTAATACTTCAGAACATCGAAAATCTACATACAGTAGTTTTACTCTTTTTGTCGGAAGATTTTTAAATTGAAGTGCGCGAAATTGGTGGAATTGTTCCATTCACCATCCGCGCCACCGCCAACAAAACACAAGGACAACCAAGAGAGAAGGAATTTGTCCGGATATTTGGCAGCCGTGACAAACGACTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTTGTTTTCGGTTAGTATCAT</pcr_primer_p1>
		<pcr_primer_p2>ATTAGTGCATTTTCCAGATGAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTGTTGTTTTCGGTTAGTATCATCAATACGACCAAATTTTAATTGTCTCTTCTCTTTCTCTCTTCTTTAGTAGCCGTGCGATATTTCCGGTCACAAACGGTTGATGAGATGAGCAACAATAATATCTGTTTTCCACAAATGGGCCGACAGATGCCGGCGGCCATTACTCGCGTGTTCATAAAGGGCCGCTCACCGAACAATACTGTTATTAGCGCTACCGAACACACTCATCTGGAAAATGCACTAAT</canonical_amplicon>
		<polymorphic_amplicon>CTGTTGTTTTCGGTTAGTATCATCAATACGACCAAATTTTAATTGTCTCTTCTCTTTCTCTCTTCTTTWGTAGCCGTGCGATATTTCCGGTCACAAACGGTTGATGAGATGAGCAACAATAATATCTGTTTTCCACAAATGGGCCGACAGATGCCGGCGGCCATTACTCGCGTGTTCATAAAGGGCCGCTCACCGAACAATACTGTTATTAGCGCTACCGAACACACTCATCTGGAAAATGCACTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24827</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>359588</contig_pos>
        <strand></strand>
        <context>GTAGCCGTGC[G/A]ATATTTCCGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GACCAAATTTTAATTGTCTCTTCTCTTTCTCTCTTCTTTAGTAGCCGTGC</left_flank>
        <right_flank>ATATTTCCGGTCACAAACGGTTGATGAGATGAGCAACAATAATATCTGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTACGAGTTGACAGATTTTTGACATCTTTCATATGAATCAAGATCATTGAATTCAAGATACAGGTATGGGCGGGCTTCTATTAGTGGAGTTACTGCAGTTTTATGAACGAAAAATTGTTTTCACAGAACGTTTAATTCAGTGATTAAAATTTTAAACTAGCAAAATTTGTTCAACATGGTCAATATCTGAATTCTCATCTCTGAATTTCTTATTATATCAAGCAAAAACATGTGTACTGTTTTCTTTTTCAATCGCACCCATTTCTCCATTGACCAATTGATATATTTCGAACCGCCTTGATTTTAGTACTAGACAATAAATATAATATTTTCAGAAAGTTATTGTTCACTACCATCCCTCTTAACAACCCTCCACCAATCATTAATATCAAATTTCCTGATACCTTTTTCCTGATTTCCTGTTGTTTTCGGTTAGTATCATCAATACGACCAAATTTTAATTGTCTCTTCTCTTTCTCTCTTCTTTAGTAGCCGTGCGATATTTCCGGTCACAAACGGTTGATGAGATGAGCAACAATAATATCTGTTTTCCACAAATGGGCCGACAGATGCCGGCGGCCATTACTCGCGTGTTCATAAAGGGCCGCTCACCGAACAATACTGTTATTAGCGCTACCGAACACACTCATCTGGAAAATGCACTAATCGAAAAAAGGCACTGCATTTCAAAGCATGAATGACTAATGAGAGACACACCGTTATGGACAAGTAGCCCAAAAAAAATTAGGGGTAAAGTGGCAATTAGTGGATAGGTCGTTACCCAAGTTTGACTTTTTTGTAATACTTCAGAACATCGAAAATCTACATACAGTAGTTTTACTCTTTTTGTCGGAAGATTTTTAAATTGAAGTGCGCGAAATTGGTGGAATTGTTCCATTCACCATCCGCGCCACCGCCAACAAAACACAAGGACAACCAAGAGAGAAGGAATTTGTCCGGATATTTGGCAGCCGTGACAAACGACTGCTTTATGAACCC</canonical>
            <polymorphic>TTTACGAGTTGACAGATTTTTGACATCTTTCATATGAATCAAGATCATTGAATTCAAGATACAGGTATGGGCGGGCTTCTATTAGTGGAGTTACTGCAGTTTTATGAACGAAAAATTGTTTTCACAGAACGTTTAATTCAGTGATTAAAATTTTAAACTAGCAAAATTTGTTCAACATGGTCAATATCTGAATTCTCATCTCTGAATTTCTTATTATATCAAGCAAAAACATGTGTACTGTTTTCTTTTTCAATCGCACCCATTTCTCCATTGACCAATTGATATATTTCGAACCGCCTTGATTTTAGTACTAGACAATAAATATAATATTTTCAGAAAGTTATTGTTCACTACCATCCCTCTTAACAACCCTCCACCAATCATTAATATCAAATTTCCTGATACCTTTTTCCTGATTTCCTGTTGTTTTCGGTTAGTATCATCAATACGACCAAATTTTAATTGTCTCTTCTCTTTCTCTCTTCTTTAGTAGCCGTGCRATATTTCCGGTCACAAACGGTTGATGAGATGAGCAACAATAATATCTGTTTTCCACAAATGGGCCGACAGATGCCGGCGGCCATTACTCGCGTGTTCATAAAGGGCCGCTCACCGAACAATACTGTTATTAGCGCTACCGAACACACTCATCTGGAAAATGCACTAATCGAAAAAAGGCACTGCATTTCAAAGCATGAATGACTAATGAGAGACACACCGTTATGGACAAGTAGCCCAAAAAAAATTAGGGGTAAAGTGGCAATTAGTGGATAGGTCGTTACCCAAGTTTGACTTTTTTGTAATACTTCAGAACATCGAAAATCTACATACAGTAGTTTTACTCTTTTTGTCGGAAGATTTTTAAATTGAAGTGCGCGAAATTGGTGGAATTGTTCCATTCACCATCCGCGCCACCGCCAACAAAACACAAGGACAACCAAGAGAGAAGGAATTTGTCCGGATATTTGGCAGCCGTGACAAACGACTGCTTTATGAACCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTTGTTTTCGGTTAGTATCAT</pcr_primer_p1>
		<pcr_primer_p2>ATTAGTGCATTTTCCAGATGAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTGTTGTTTTCGGTTAGTATCATCAATACGACCAAATTTTAATTGTCTCTTCTCTTTCTCTCTTCTTTAGTAGCCGTGCGATATTTCCGGTCACAAACGGTTGATGAGATGAGCAACAATAATATCTGTTTTCCACAAATGGGCCGACAGATGCCGGCGGCCATTACTCGCGTGTTCATAAAGGGCCGCTCACCGAACAATACTGTTATTAGCGCTACCGAACACACTCATCTGGAAAATGCACTAAT</canonical_amplicon>
		<polymorphic_amplicon>CTGTTGTTTTCGGTTAGTATCATCAATACGACCAAATTTTAATTGTCTCTTCTCTTTCTCTCTTCTTTAGTAGCCGTGCRATATTTCCGGTCACAAACGGTTGATGAGATGAGCAACAATAATATCTGTTTTCCACAAATGGGCCGACAGATGCCGGCGGCCATTACTCGCGTGTTCATAAAGGGCCGCTCACCGAACAATACTGTTATTAGCGCTACCGAACACACTCATCTGGAAAATGCACTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24828</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>359708</contig_pos>
        <strand></strand>
        <context>TCACCGAACA[A/G]TACTGTTATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATGCCGGCGGCCATTACTCGCGTGTTCATAAAGGGCCGCTCACCGAACA</left_flank>
        <right_flank>TACTGTTATTAGCGCTACCGAACACACTCATCTGGAAAATGCACTAATCG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCACAGAACGTTTAATTCAGTGATTAAAATTTTAAACTAGCAAAATTTGTTCAACATGGTCAATATCTGAATTCTCATCTCTGAATTTCTTATTATATCAAGCAAAAACATGTGTACTGTTTTCTTTTTCAATCGCACCCATTTCTCCATTGACCAATTGATATATTTCGAACCGCCTTGATTTTAGTACTAGACAATAAATATAATATTTTCAGAAAGTTATTGTTCACTACCATCCCTCTTAACAACCCTCCACCAATCATTAATATCAAATTTCCTGATACCTTTTTCCTGATTTCCTGTTGTTTTCGGTTAGTATCATCAATACGACCAAATTTTAATTGTCTCTTCTCTTTCTCTCTTCTTTAGTAGCCGTGCGATATTTCCGGTCACAAACGGTTGATGAGATGAGCAACAATAATATCTGTTTTCCACAAATGGGCCGACAGATGCCGGCGGCCATTACTCGCGTGTTCATAAAGGGCCGCTCACCGAACAATACTGTTATTAGCGCTACCGAACACACTCATCTGGAAAATGCACTAATCGAAAAAAGGCACTGCATTTCAAAGCATGAATGACTAATGAGAGACACACCGTTATGGACAAGTAGCCCAAAAAAAATTAGGGGTAAAGTGGCAATTAGTGGATAGGTCGTTACCCAAGTTTGACTTTTTTGTAATACTTCAGAACATCGAAAATCTACATACAGTAGTTTTACTCTTTTTGTCGGAAGATTTTTAAATTGAAGTGCGCGAAATTGGTGGAATTGTTCCATTCACCATCCGCGCCACCGCCAACAAAACACAAGGACAACCAAGAGAGAAGGAATTTGTCCGGATATTTGGCAGCCGTGACAAACGACTGCTTTATGAACCCGCCAATTTTGATGTCACACCTGCAGTTTTATACTTTCTTCGGTTTGTCGTGGTCTCTAATCTTGCGGGGAGGCCAATAAGGGACAATTTTTCTTTTTGTTGTCAATTAAAATGAAATGAT</canonical>
            <polymorphic>TTCACAGAACGTTTAATTCAGTGATTAAAATTTTAAACTAGCAAAATTTGTTCAACATGGTCAATATCTGAATTCTCATCTCTGAATTTCTTATTATATCAAGCAAAAACATGTGTACTGTTTTCTTTTTCAATCGCACCCATTTCTCCATTGACCAATTGATATATTTCGAACCGCCTTGATTTTAGTACTAGACAATAAATATAATATTTTCAGAAAGTTATTGTTCACTACCATCCCTCTTAACAACCCTCCACCAATCATTAATATCAAATTTCCTGATACCTTTTTCCTGATTTCCTGTTGTTTTCGGTTAGTATCATCAATACGACCAAATTTTAATTGTCTCTTCTCTTTCTCTCTTCTTTAGTAGCCGTGCGATATTTCCGGTCACAAACGGTTGATGAGATGAGCAACAATAATATCTGTTTTCCACAAATGGGCCGACAGATGCCGGCGGCCATTACTCGCGTGTTCATAAAGGGCCGCTCACCGAACARTACTGTTATTAGCGCTACCGAACACACTCATCTGGAAAATGCACTAATCGAAAAAAGGCACTGCATTTCAAAGCATGAATGACTAATGAGAGACACACCGTTATGGACAAGTAGCCCAAAAAAAATTAGGGGTAAAGTGGCAATTAGTGGATAGGTCGTTACCCAAGTTTGACTTTTTTGTAATACTTCAGAACATCGAAAATCTACATACAGTAGTTTTACTCTTTTTGTCGGAAGATTTTTAAATTGAAGTGCGCGAAATTGGTGGAATTGTTCCATTCACCATCCGCGCCACCGCCAACAAAACACAAGGACAACCAAGAGAGAAGGAATTTGTCCGGATATTTGGCAGCCGTGACAAACGACTGCTTTATGAACCCGCCAATTTTGATGTCACACCTGCAGTTTTATACTTTCTTCGGTTTGTCGTGGTCTCTAATCTTGCGGGGAGGCCAATAAGGGACAATTTTTCTTTTTGTTGTCAATTAAAATGAAATGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATGAGATGAGCAACAATAATA</pcr_primer_p1>
		<pcr_primer_p2>CTATCCACTAATTGCCACTTTAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TGATGAGATGAGCAACAATAATATCTGTTTTCCACAAATGGGCCGACAGATGCCGGCGGCCATTACTCGCGTGTTCATAAAGGGCCGCTCACCGAACAATACTGTTATTAGCGCTACCGAACACACTCATCTGGAAAATGCACTAATCGAAAAAAGGCACTGCATTTCAAAGCATGAATGACTAATGAGAGACACACCGTTATGGACAAGTAGCCCAAAAAAAATTAGGGGTAAAGTGGCAATTAGTGGATAG</canonical_amplicon>
		<polymorphic_amplicon>TGATGAGATGAGCAACAATAATATCTGTTTTCCACAAATGGGCCGACAGATGCCGGCGGCCATTACTCGCGTGTTCATAAAGGGCCGCTCACCGAACARTACTGTTATTAGCGCTACCGAACACACTCATCTGGAAAATGCACTAATCGAAAAAAGGCACTGCATTTCAAAGCATGAATGACTAATGAGAGACACACCGTTATGGACAAGTAGCCCAAAAAAAATTAGGGGTAAAGTGGCAATTAGTGGATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24829</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>360826</contig_pos>
        <strand>+</strand>
        <context>TCTTTTTACT[C/G]TCTTGCGCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTGACAACATATGGTCACCTGCTGTCTTCCAACTTGCTCCTCTTTTTACT</left_flank>
        <right_flank>TCTTGCGCAAAAAGTCAATTATATCCACCTTGTTGTTAGAATCACTGGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTACAAGAGATAGCAAAAATTTGTCAACTTATGGAATGTTTGTCGCAATATCAGCAAGGTGTTATCAATTAACAGGTTTTTGATATCTGTTAAAGCAATTGAGATAATCAAATTAAAAATATAGGAAGGCCTACTTTAGAGCGTTTAAGGTATATGAAATATACCTAGAACGTCTTTTGAATTTTATCAGCTTCATAAAAAACTTGCAAACGGTTAGAATGAATCTTTGAAAAGTTACCTTGACTTCCTATGGGATAGAACTCGATAATTATTATCATCTGTTATTTCAACTCACTTATTCAATGGATGCAATCAAACCTAACAAAAACAGCGTCACTAAAATGTAGGCGCAACATATTTAATTGACGATTAACTCTTCTTTCTCTGTCTCCCCTATATTCTCTTATCTAAAAAAACAATATCAAAAATGACATTTCCGGAGACAACTGACAACATATGGTCACCTGCTGTCTTCCAACTTGCTCCTCTTTTTACTGTCTTGCGCAAAAAGTCAATTATATCCACCTTGTTGTTAGAATCACTGGGCAATTAAGAAACAGTCGCCAAAGGTCATAATTAGGACAATGAGTTGAAAGTTGCCGAAGAAGAAAGCGAAAAAAAAAGAATAAGGGACCCCGTGAATTGACCACTTGTTGTCTATTATCCTTGTTTCTTGTCGGAAGTATTAGGAATACCCTTGAGACCATCCGATTCCCAACAGTCAGCTGCCATCATTGTCCCGCATCATTTGCTCATTTATGACTAATAATTGAGGAAAAGTATGGAGGAGATCTGCGGAGAAACAAATCGTCCTTGGCAAGCTGACAGACGGGGGGAGCGATGGATAATGAAGAGTATCAAATCGGAAGTATTATAGCATCATTTTCATGTTTTATGACTAATGAGGGACCAGAAATGAAAATGGAATGTAATGTTTCGCAGCTAAGAAAAAATACTACTGCTTTCAGAAATGTCAGCAAGTCAAATTTTTGAATTC</canonical>
            <polymorphic>TTTCTACAAGAGATAGCAAAAATTTGTCAACTTATGGAATGTTTGTCGCAATATCAGCAAGGTGTTATCAATTAACAGGTTTTTGATATCTGTTAAAGCAATTGAGATAATCAAATTAAAAATATAGGAAGGCCTACTTTAGAGCGTTTAAGGTATATGAAATATACCTAGAACGTCTTTTGAATTTTATCAGCTTCATAAAAAACTTGCAAACGGTTAGAATGAATCTTTGAAAAGTTACCTTGACTTCCTATGGGATAGAACTCGATAATTATTATCATCTGTTATTTCAACTCACTTATTCAATGGATGCAATCAAACCTAACAAAAACAGCGTCACTAAAATGTAGGCGCAACATATTTAATTGACGATTAACTCTTCTTTCTCTGTCTCCCCTATATTCTCTTATCTAAAAAAACAATATCAAAAATGACATTTCCGGAGACAACTGACAACATATGGTCACCTGCTGTCTTCCAACTTGCTCCTCTTTTTACTSTCTTGCGCAAAAAGTCAATTATATCCACCTTGTTGTTAGAATCACTGGGCAATTAAGAAACAGTCGCCAAAGGTCATAATTAGGACAATGAGTTGAAAGTTGCCGAAGAAGAAAGCGAAAAAAAAAGAATAAGGGACCCCGTGAATTGACCACTTGTTGTCTATTATCCTTGTTTCTTGTCGGAAGTATTAGGAATACCCTTGAGACCATCCGATTCCCAACAGTCAGCTGCCATCATTGTCCCGCATCATTTGCTCATTTATGACTAATAATTGAGGAAAAGTATGGAGGAGATCTGCGGAGAAACAAATCGTCCTTGGCAAGCTGACAGACGGGGGGAGCGATGGATAATGAAGAGTATCAAATCGGAAGTATTATAGCATCATTTTCATGTTTTATGACTAATGAGGGACCAGAAATGAAAATGGAATGTAATGTTTCGCAGCTAAGAAAAAATACTACTGCTTTCAGAAATGTCAGCAAGTCAAATTTTTGAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>284 277 215 161 63</canonical_bands>
                <polymorphic_bands>347 277 215 161</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCAAACCTAACAAAAACAGC</pcr_primer_p1>
		<pcr_primer_p2>ACTGTTTCTTAATTGCCCAGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATCAAACCTAACAAAAACAGCGTCACTAAAATGTAGGCGCAACATATTTAATTGACGATTAACTCTTCTTTCTCTGTCTCCCCTATATTCTCTTATCTAAAAAAACAATATCAAAAATGACATTTCCGGAGACAACTGACAACATATGGTCACCTGCTGTCTTCCAACTTGCTCCTCTTTTTACTGTCTTGCGCAAAAAGTCAATTATATCCACCTTGTTGTTAGAATCACTGGGCAATTAAGAAACAGT</canonical_amplicon>
		<polymorphic_amplicon>AATCAAACCTAACAAAAACAGCGTCACTAAAATGTAGGCGCAACATATTTAATTGACGATTAACTCTTCTTTCTCTGTCTCCCCTATATTCTCTTATCTAAAAAAACAATATCAAAAATGACATTTCCGGAGACAACTGACAACATATGGTCACCTGCTGTCTTCCAACTTGCTCCTCTTTTTACTSTCTTGCGCAAAAAGTCAATTATATCCACCTTGTTGTTAGAATCACTGGGCAATTAAGAAACAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24830</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>360944</contig_pos>
        <strand>+</strand>
        <context>GAAGAAAGCG[A/G]AAAAAAAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAAGGTCATAATTAGGACAATGAGTTGAAAGTTGCCGAAGAAGAAAGCG</left_flank>
        <right_flank>AAAAAAAAGAATAAGGGACCCCGTGAATTGACCACTTGTTGTCTATTATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATATAGGAAGGCCTACTTTAGAGCGTTTAAGGTATATGAAATATACCTAGAACGTCTTTTGAATTTTATCAGCTTCATAAAAAACTTGCAAACGGTTAGAATGAATCTTTGAAAAGTTACCTTGACTTCCTATGGGATAGAACTCGATAATTATTATCATCTGTTATTTCAACTCACTTATTCAATGGATGCAATCAAACCTAACAAAAACAGCGTCACTAAAATGTAGGCGCAACATATTTAATTGACGATTAACTCTTCTTTCTCTGTCTCCCCTATATTCTCTTATCTAAAAAAACAATATCAAAAATGACATTTCCGGAGACAACTGACAACATATGGTCACCTGCTGTCTTCCAACTTGCTCCTCTTTTTACTGTCTTGCGCAAAAAGTCAATTATATCCACCTTGTTGTTAGAATCACTGGGCAATTAAGAAACAGTCGCCAAAGGTCATAATTAGGACAATGAGTTGAAAGTTGCCGAAGAAGAAAGCGAAAAAAAAAGAATAAGGGACCCCGTGAATTGACCACTTGTTGTCTATTATCCTTGTTTCTTGTCGGAAGTATTAGGAATACCCTTGAGACCATCCGATTCCCAACAGTCAGCTGCCATCATTGTCCCGCATCATTTGCTCATTTATGACTAATAATTGAGGAAAAGTATGGAGGAGATCTGCGGAGAAACAAATCGTCCTTGGCAAGCTGACAGACGGGGGGAGCGATGGATAATGAAGAGTATCAAATCGGAAGTATTATAGCATCATTTTCATGTTTTATGACTAATGAGGGACCAGAAATGAAAATGGAATGTAATGTTTCGCAGCTAAGAAAAAATACTACTGCTTTCAGAAATGTCAGCAAGTCAAATTTTTGAATTCAAAAGTCGGAGGTCGGAATTCTTGACATCTCTAACAGCTATATCATAAAAATGCTGAAAATAACAAAATTAACTCAAATACAATGTGTACCGCTTTAAAACGTTTATCACTCTTTGCT</canonical>
            <polymorphic>AAAATATAGGAAGGCCTACTTTAGAGCGTTTAAGGTATATGAAATATACCTAGAACGTCTTTTGAATTTTATCAGCTTCATAAAAAACTTGCAAACGGTTAGAATGAATCTTTGAAAAGTTACCTTGACTTCCTATGGGATAGAACTCGATAATTATTATCATCTGTTATTTCAACTCACTTATTCAATGGATGCAATCAAACCTAACAAAAACAGCGTCACTAAAATGTAGGCGCAACATATTTAATTGACGATTAACTCTTCTTTCTCTGTCTCCCCTATATTCTCTTATCTAAAAAAACAATATCAAAAATGACATTTCCGGAGACAACTGACAACATATGGTCACCTGCTGTCTTCCAACTTGCTCCTCTTTTTACTGTCTTGCGCAAAAAGTCAATTATATCCACCTTGTTGTTAGAATCACTGGGCAATTAAGAAACAGTCGCCAAAGGTCATAATTAGGACAATGAGTTGAAAGTTGCCGAAGAAGAAAGCGRAAAAAAAAGAATAAGGGACCCCGTGAATTGACCACTTGTTGTCTATTATCCTTGTTTCTTGTCGGAAGTATTAGGAATACCCTTGAGACCATCCGATTCCCAACAGTCAGCTGCCATCATTGTCCCGCATCATTTGCTCATTTATGACTAATAATTGAGGAAAAGTATGGAGGAGATCTGCGGAGAAACAAATCGTCCTTGGCAAGCTGACAGACGGGGGGAGCGATGGATAATGAAGAGTATCAAATCGGAAGTATTATAGCATCATTTTCATGTTTTATGACTAATGAGGGACCAGAAATGAAAATGGAATGTAATGTTTCGCAGCTAAGAAAAAATACTACTGCTTTCAGAAATGTCAGCAAGTCAAATTTTTGAATTCAAAAGTCGGAGGTCGGAATTCTTGACATCTCTAACAGCTATATCATAAAAATGCTGAAAATAACAAAATTAACTCAAATACAATGTGTACCGCTTTAAAACGTTTATCACTCTTTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAATTATATCCACCTTGTTGTT</pcr_primer_p1>
		<pcr_primer_p2>TAGTCATAAATGAGCAAATGATG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCAATTATATCCACCTTGTTGTTAGAATCACTGGGCAATTAAGAAACAGTCGCCAAAGGTCATAATTAGGACAATGAGTTGAAAGTTGCCGAAGAAGAAAGCGAAAAAAAAAGAATAAGGGACCCCGTGAATTGACCACTTGTTGTCTATTATCCTTGTTTCTTGTCGGAAGTATTAGGAATACCCTTGAGACCATCCGATTCCCAACAGTCAGCTGCCATCATTGTCCCGCATCATTTGCTCATTTATGACTA</canonical_amplicon>
		<polymorphic_amplicon>TCAATTATATCCACCTTGTTGTTAGAATCACTGGGCAATTAAGAAACAGTCGCCAAAGGTCATAATTAGGACAATGAGTTGAAAGTTGCCGAAGAAGAAAGCGRAAAAAAAAGAATAAGGGACCCCGTGAATTGACCACTTGTTGTCTATTATCCTTGTTTCTTGTCGGAAGTATTAGGAATACCCTTGAGACCATCCGATTCCCAACAGTCAGCTGCCATCATTGTCCCGCATCATTTGCTCATTTATGACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24831</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>360962</contig_pos>
        <strand></strand>
        <context>AGAATAAGGG[A/G]CCCCGTGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATGAGTTGAAAGTTGCCGAAGAAGAAAGCGAAAAAAAAAGAATAAGGG</left_flank>
        <right_flank>CCCCGTGAATTGACCACTTGTTGTCTATTATCCTTGTTTCTTGTCGGAAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTAGAGCGTTTAAGGTATATGAAATATACCTAGAACGTCTTTTGAATTTTATCAGCTTCATAAAAAACTTGCAAACGGTTAGAATGAATCTTTGAAAAGTTACCTTGACTTCCTATGGGATAGAACTCGATAATTATTATCATCTGTTATTTCAACTCACTTATTCAATGGATGCAATCAAACCTAACAAAAACAGCGTCACTAAAATGTAGGCGCAACATATTTAATTGACGATTAACTCTTCTTTCTCTGTCTCCCCTATATTCTCTTATCTAAAAAAACAATATCAAAAATGACATTTCCGGAGACAACTGACAACATATGGTCACCTGCTGTCTTCCAACTTGCTCCTCTTTTTACTGTCTTGCGCAAAAAGTCAATTATATCCACCTTGTTGTTAGAATCACTGGGCAATTAAGAAACAGTCGCCAAAGGTCATAATTAGGACAATGAGTTGAAAGTTGCCGAAGAAGAAAGCGAAAAAAAAAGAATAAGGGACCCCGTGAATTGACCACTTGTTGTCTATTATCCTTGTTTCTTGTCGGAAGTATTAGGAATACCCTTGAGACCATCCGATTCCCAACAGTCAGCTGCCATCATTGTCCCGCATCATTTGCTCATTTATGACTAATAATTGAGGAAAAGTATGGAGGAGATCTGCGGAGAAACAAATCGTCCTTGGCAAGCTGACAGACGGGGGGAGCGATGGATAATGAAGAGTATCAAATCGGAAGTATTATAGCATCATTTTCATGTTTTATGACTAATGAGGGACCAGAAATGAAAATGGAATGTAATGTTTCGCAGCTAAGAAAAAATACTACTGCTTTCAGAAATGTCAGCAAGTCAAATTTTTGAATTCAAAAGTCGGAGGTCGGAATTCTTGACATCTCTAACAGCTATATCATAAAAATGCTGAAAATAACAAAATTAACTCAAATACAATGTGTACCGCTTTAAAACGTTTATCACTCTTTGCTGGAACCCTTAAAACAATT</canonical>
            <polymorphic>CTTTAGAGCGTTTAAGGTATATGAAATATACCTAGAACGTCTTTTGAATTTTATCAGCTTCATAAAAAACTTGCAAACGGTTAGAATGAATCTTTGAAAAGTTACCTTGACTTCCTATGGGATAGAACTCGATAATTATTATCATCTGTTATTTCAACTCACTTATTCAATGGATGCAATCAAACCTAACAAAAACAGCGTCACTAAAATGTAGGCGCAACATATTTAATTGACGATTAACTCTTCTTTCTCTGTCTCCCCTATATTCTCTTATCTAAAAAAACAATATCAAAAATGACATTTCCGGAGACAACTGACAACATATGGTCACCTGCTGTCTTCCAACTTGCTCCTCTTTTTACTGTCTTGCGCAAAAAGTCAATTATATCCACCTTGTTGTTAGAATCACTGGGCAATTAAGAAACAGTCGCCAAAGGTCATAATTAGGACAATGAGTTGAAAGTTGCCGAAGAAGAAAGCGAAAAAAAAAGAATAAGGGRCCCCGTGAATTGACCACTTGTTGTCTATTATCCTTGTTTCTTGTCGGAAGTATTAGGAATACCCTTGAGACCATCCGATTCCCAACAGTCAGCTGCCATCATTGTCCCGCATCATTTGCTCATTTATGACTAATAATTGAGGAAAAGTATGGAGGAGATCTGCGGAGAAACAAATCGTCCTTGGCAAGCTGACAGACGGGGGGAGCGATGGATAATGAAGAGTATCAAATCGGAAGTATTATAGCATCATTTTCATGTTTTATGACTAATGAGGGACCAGAAATGAAAATGGAATGTAATGTTTCGCAGCTAAGAAAAAATACTACTGCTTTCAGAAATGTCAGCAAGTCAAATTTTTGAATTCAAAAGTCGGAGGTCGGAATTCTTGACATCTCTAACAGCTATATCATAAAAATGCTGAAAATAACAAAATTAACTCAAATACAATGTGTACCGCTTTAAAACGTTTATCACTCTTTGCTGGAACCCTTAAAACAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>498 276 226</canonical_bands>
                <polymorphic_bands>774 226</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGGWCCC</site>
                <isoschizomers>
                    <enzyme>SanDI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAATTATATCCACCTTGTTGTT</pcr_primer_p1>
		<pcr_primer_p2>TAGTCATAAATGAGCAAATGATG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCAATTATATCCACCTTGTTGTTAGAATCACTGGGCAATTAAGAAACAGTCGCCAAAGGTCATAATTAGGACAATGAGTTGAAAGTTGCCGAAGAAGAAAGCGAAAAAAAAAGAATAAGGGACCCCGTGAATTGACCACTTGTTGTCTATTATCCTTGTTTCTTGTCGGAAGTATTAGGAATACCCTTGAGACCATCCGATTCCCAACAGTCAGCTGCCATCATTGTCCCGCATCATTTGCTCATTTATGACTA</canonical_amplicon>
		<polymorphic_amplicon>TCAATTATATCCACCTTGTTGTTAGAATCACTGGGCAATTAAGAAACAGTCGCCAAAGGTCATAATTAGGACAATGAGTTGAAAGTTGCCGAAGAAGAAAGCGAAAAAAAAAGAATAAGGGRCCCCGTGAATTGACCACTTGTTGTCTATTATCCTTGTTTCTTGTCGGAAGTATTAGGAATACCCTTGAGACCATCCGATTCCCAACAGTCAGCTGCCATCATTGTCCCGCATCATTTGCTCATTTATGACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24832</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>361024</contig_pos>
        <strand>+</strand>
        <context>ATTAGGAATA[C/T]CCTTGAGACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACCACTTGTTGTCTATTATCCTTGTTTCTTGTCGGAAGTATTAGGAATA</left_flank>
        <right_flank>CCTTGAGACCATCCGATTCCCAACAGTCAGCTGCCATCATTGTCCCGCAT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAAAACTTGCAAACGGTTAGAATGAATCTTTGAAAAGTTACCTTGACTTCCTATGGGATAGAACTCGATAATTATTATCATCTGTTATTTCAACTCACTTATTCAATGGATGCAATCAAACCTAACAAAAACAGCGTCACTAAAATGTAGGCGCAACATATTTAATTGACGATTAACTCTTCTTTCTCTGTCTCCCCTATATTCTCTTATCTAAAAAAACAATATCAAAAATGACATTTCCGGAGACAACTGACAACATATGGTCACCTGCTGTCTTCCAACTTGCTCCTCTTTTTACTGTCTTGCGCAAAAAGTCAATTATATCCACCTTGTTGTTAGAATCACTGGGCAATTAAGAAACAGTCGCCAAAGGTCATAATTAGGACAATGAGTTGAAAGTTGCCGAAGAAGAAAGCGAAAAAAAAAGAATAAGGGACCCCGTGAATTGACCACTTGTTGTCTATTATCCTTGTTTCTTGTCGGAAGTATTAGGAATACCCTTGAGACCATCCGATTCCCAACAGTCAGCTGCCATCATTGTCCCGCATCATTTGCTCATTTATGACTAATAATTGAGGAAAAGTATGGAGGAGATCTGCGGAGAAACAAATCGTCCTTGGCAAGCTGACAGACGGGGGGAGCGATGGATAATGAAGAGTATCAAATCGGAAGTATTATAGCATCATTTTCATGTTTTATGACTAATGAGGGACCAGAAATGAAAATGGAATGTAATGTTTCGCAGCTAAGAAAAAATACTACTGCTTTCAGAAATGTCAGCAAGTCAAATTTTTGAATTCAAAAGTCGGAGGTCGGAATTCTTGACATCTCTAACAGCTATATCATAAAAATGCTGAAAATAACAAAATTAACTCAAATACAATGTGTACCGCTTTAAAACGTTTATCACTCTTTGCTGGAACCCTTAAAACAATTCTGAAATGACGCTATTATTCTGTTTAGTTTACTCTATTCTATAGTTTTCAGGTAAACCGAAA</canonical>
            <polymorphic>TAAAAAACTTGCAAACGGTTAGAATGAATCTTTGAAAAGTTACCTTGACTTCCTATGGGATAGAACTCGATAATTATTATCATCTGTTATTTCAACTCACTTATTCAATGGATGCAATCAAACCTAACAAAAACAGCGTCACTAAAATGTAGGCGCAACATATTTAATTGACGATTAACTCTTCTTTCTCTGTCTCCCCTATATTCTCTTATCTAAAAAAACAATATCAAAAATGACATTTCCGGAGACAACTGACAACATATGGTCACCTGCTGTCTTCCAACTTGCTCCTCTTTTTACTGTCTTGCGCAAAAAGTCAATTATATCCACCTTGTTGTTAGAATCACTGGGCAATTAAGAAACAGTCGCCAAAGGTCATAATTAGGACAATGAGTTGAAAGTTGCCGAAGAAGAAAGCGAAAAAAAAAGAATAAGGGACCCCGTGAATTGACCACTTGTTGTCTATTATCCTTGTTTCTTGTCGGAAGTATTAGGAATAYCCTTGAGACCATCCGATTCCCAACAGTCAGCTGCCATCATTGTCCCGCATCATTTGCTCATTTATGACTAATAATTGAGGAAAAGTATGGAGGAGATCTGCGGAGAAACAAATCGTCCTTGGCAAGCTGACAGACGGGGGGAGCGATGGATAATGAAGAGTATCAAATCGGAAGTATTATAGCATCATTTTCATGTTTTATGACTAATGAGGGACCAGAAATGAAAATGGAATGTAATGTTTCGCAGCTAAGAAAAAATACTACTGCTTTCAGAAATGTCAGCAAGTCAAATTTTTGAATTCAAAAGTCGGAGGTCGGAATTCTTGACATCTCTAACAGCTATATCATAAAAATGCTGAAAATAACAAAATTAACTCAAATACAATGTGTACCGCTTTAAAACGTTTATCACTCTTTGCTGGAACCCTTAAAACAATTCTGAAATGACGCTATTATTCTGTTTAGTTTACTCTATTCTATAGTTTTCAGGTAAACCGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAATTATATCCACCTTGTTGTT</pcr_primer_p1>
		<pcr_primer_p2>TAGTCATAAATGAGCAAATGATG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCAATTATATCCACCTTGTTGTTAGAATCACTGGGCAATTAAGAAACAGTCGCCAAAGGTCATAATTAGGACAATGAGTTGAAAGTTGCCGAAGAAGAAAGCGAAAAAAAAAGAATAAGGGACCCCGTGAATTGACCACTTGTTGTCTATTATCCTTGTTTCTTGTCGGAAGTATTAGGAATACCCTTGAGACCATCCGATTCCCAACAGTCAGCTGCCATCATTGTCCCGCATCATTTGCTCATTTATGACTA</canonical_amplicon>
		<polymorphic_amplicon>TCAATTATATCCACCTTGTTGTTAGAATCACTGGGCAATTAAGAAACAGTCGCCAAAGGTCATAATTAGGACAATGAGTTGAAAGTTGCCGAAGAAGAAAGCGAAAAAAAAAGAATAAGGGACCCCGTGAATTGACCACTTGTTGTCTATTATCCTTGTTTCTTGTCGGAAGTATTAGGAATAYCCTTGAGACCATCCGATTCCCAACAGTCAGCTGCCATCATTGTCCCGCATCATTTGCTCATTTATGACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24833</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>361258</contig_pos>
        <strand>+</strand>
        <context>AAAATGGAAT[G/T]TAATGTTTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATCATTTTCATGTTTTATGACTAATGAGGGACCAGAAATGAAAATGGAAT</left_flank>
        <right_flank>TAATGTTTCGCAGCTAAGAAAAAATACTACTGCTTTCAGAAATGTCAGCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACATTTCCGGAGACAACTGACAACATATGGTCACCTGCTGTCTTCCAACTTGCTCCTCTTTTTACTGTCTTGCGCAAAAAGTCAATTATATCCACCTTGTTGTTAGAATCACTGGGCAATTAAGAAACAGTCGCCAAAGGTCATAATTAGGACAATGAGTTGAAAGTTGCCGAAGAAGAAAGCGAAAAAAAAAGAATAAGGGACCCCGTGAATTGACCACTTGTTGTCTATTATCCTTGTTTCTTGTCGGAAGTATTAGGAATACCCTTGAGACCATCCGATTCCCAACAGTCAGCTGCCATCATTGTCCCGCATCATTTGCTCATTTATGACTAATAATTGAGGAAAAGTATGGAGGAGATCTGCGGAGAAACAAATCGTCCTTGGCAAGCTGACAGACGGGGGGAGCGATGGATAATGAAGAGTATCAAATCGGAAGTATTATAGCATCATTTTCATGTTTTATGACTAATGAGGGACCAGAAATGAAAATGGAATGTAATGTTTCGCAGCTAAGAAAAAATACTACTGCTTTCAGAAATGTCAGCAAGTCAAATTTTTGAATTCAAAAGTCGGAGGTCGGAATTCTTGACATCTCTAACAGCTATATCATAAAAATGCTGAAAATAACAAAATTAACTCAAATACAATGTGTACCGCTTTAAAACGTTTATCACTCTTTGCTGGAACCCTTAAAACAATTCTGAAATGACGCTATTATTCTGTTTAGTTTACTCTATTCTATAGTTTTCAGGTAAACCGAAAAACTCTGAACTTTTTTTGAAGGATTTTGAAGTTTCCATGAAAATGTCTCAATATGAAGTACCTTAACTGTACTTTGTCATATTTTAGTAGGATTCGGAAACGGTCTGCATCACTATCTGAACAGCTTGCTGTCAGAAGTTGCGAGCGACGGTCGAGTCGAGAAAAGAATTTGATATCTGTTGGTTTACAAGTTTCCCTGGAAAACGATATCAGTTAATACATCTCACGGTGTGG</canonical>
            <polymorphic>GACATTTCCGGAGACAACTGACAACATATGGTCACCTGCTGTCTTCCAACTTGCTCCTCTTTTTACTGTCTTGCGCAAAAAGTCAATTATATCCACCTTGTTGTTAGAATCACTGGGCAATTAAGAAACAGTCGCCAAAGGTCATAATTAGGACAATGAGTTGAAAGTTGCCGAAGAAGAAAGCGAAAAAAAAAGAATAAGGGACCCCGTGAATTGACCACTTGTTGTCTATTATCCTTGTTTCTTGTCGGAAGTATTAGGAATACCCTTGAGACCATCCGATTCCCAACAGTCAGCTGCCATCATTGTCCCGCATCATTTGCTCATTTATGACTAATAATTGAGGAAAAGTATGGAGGAGATCTGCGGAGAAACAAATCGTCCTTGGCAAGCTGACAGACGGGGGGAGCGATGGATAATGAAGAGTATCAAATCGGAAGTATTATAGCATCATTTTCATGTTTTATGACTAATGAGGGACCAGAAATGAAAATGGAATKTAATGTTTCGCAGCTAAGAAAAAATACTACTGCTTTCAGAAATGTCAGCAAGTCAAATTTTTGAATTCAAAAGTCGGAGGTCGGAATTCTTGACATCTCTAACAGCTATATCATAAAAATGCTGAAAATAACAAAATTAACTCAAATACAATGTGTACCGCTTTAAAACGTTTATCACTCTTTGCTGGAACCCTTAAAACAATTCTGAAATGACGCTATTATTCTGTTTAGTTTACTCTATTCTATAGTTTTCAGGTAAACCGAAAAACTCTGAACTTTTTTTGAAGGATTTTGAAGTTTCCATGAAAATGTCTCAATATGAAGTACCTTAACTGTACTTTGTCATATTTTAGTAGGATTCGGAAACGGTCTGCATCACTATCTGAACAGCTTGCTGTCAGAAGTTGCGAGCGACGGTCGAGTCGAGAAAAGAATTTGATATCTGTTGGTTTACAAGTTTCCCTGGAAAACGATATCAGTTAATACATCTCACGGTGTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGAGTATCAAATCGGAAGTA</pcr_primer_p1>
		<pcr_primer_p2>TTTAAAGCGGTACACATTGTATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGAAGAGTATCAAATCGGAAGTATTATAGCATCATTTTCATGTTTTATGACTAATGAGGGACCAGAAATGAAAATGGAATGTAATGTTTCGCAGCTAAGAAAAAATACTACTGCTTTCAGAAATGTCAGCAAGTCAAATTTTTGAATTCAAAAGTCGGAGGTCGGAATTCTTGACATCTCTAACAGCTATATCATAAAAATGCTGAAAATAACAAAATTAACTCAAATACAATGTGTACCGCTTTAAA</canonical_amplicon>
		<polymorphic_amplicon>TGAAGAGTATCAAATCGGAAGTATTATAGCATCATTTTCATGTTTTATGACTAATGAGGGACCAGAAATGAAAATGGAATKTAATGTTTCGCAGCTAAGAAAAAATACTACTGCTTTCAGAAATGTCAGCAAGTCAAATTTTTGAATTCAAAAGTCGGAGGTCGGAATTCTTGACATCTCTAACAGCTATATCATAAAAATGCTGAAAATAACAAAATTAACTCAAATACAATGTGTACCGCTTTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24834</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>361334</contig_pos>
        <strand></strand>
        <context>TTCAAaagtc[G/T]gaggtcggaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTACTGCTTTCAGAAATGTCAGCAAGTCAAATTTTTGAATTCAAAAGTC</left_flank>
        <right_flank>GAGGTCGGAATTCTTGACATCTCTAACAGCTATATCATAAAAATGCTGAA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAGTCAATTATATCCACCTTGTTGTTAGAATCACTGGGCAATTAAGAAACAGTCGCCAAAGGTCATAATTAGGACAATGAGTTGAAAGTTGCCGAAGAAGAAAGCGAAAAAAAAAGAATAAGGGACCCCGTGAATTGACCACTTGTTGTCTATTATCCTTGTTTCTTGTCGGAAGTATTAGGAATACCCTTGAGACCATCCGATTCCCAACAGTCAGCTGCCATCATTGTCCCGCATCATTTGCTCATTTATGACTAATAATTGAGGAAAAGTATGGAGGAGATCTGCGGAGAAACAAATCGTCCTTGGCAAGCTGACAGACGGGGGGAGCGATGGATAATGAAGAGTATCAAATCGGAAGTATTATAGCATCATTTTCATGTTTTATGACTAATGAGGGACCAGAAATGAAAATGGAATGTAATGTTTCGCAGCTAAGAAAAAATACTACTGCTTTCAGAAATGTCAGCAAGTCAAATTTTTGAATTCAAAAGTCGGAGGTCGGAATTCTTGACATCTCTAACAGCTATATCATAAAAATGCTGAAAATAACAAAATTAACTCAAATACAATGTGTACCGCTTTAAAACGTTTATCACTCTTTGCTGGAACCCTTAAAACAATTCTGAAATGACGCTATTATTCTGTTTAGTTTACTCTATTCTATAGTTTTCAGGTAAACCGAAAAACTCTGAACTTTTTTTGAAGGATTTTGAAGTTTCCATGAAAATGTCTCAATATGAAGTACCTTAACTGTACTTTGTCATATTTTAGTAGGATTCGGAAACGGTCTGCATCACTATCTGAACAGCTTGCTGTCAGAAGTTGCGAGCGACGGTCGAGTCGAGAAAAGAATTTGATATCTGTTGGTTTACAAGTTTCCCTGGAAAACGATATCAGTTAATACATCTCACGGTGTGGTCAAGATTCTCATACTTGCCCGTTCTTCACTTGATTTGATTTTAGAGAGACCCTATCAATCAAGGGTTTTACCGAA</canonical>
            <polymorphic>AAAAAGTCAATTATATCCACCTTGTTGTTAGAATCACTGGGCAATTAAGAAACAGTCGCCAAAGGTCATAATTAGGACAATGAGTTGAAAGTTGCCGAAGAAGAAAGCGAAAAAAAAAGAATAAGGGACCCCGTGAATTGACCACTTGTTGTCTATTATCCTTGTTTCTTGTCGGAAGTATTAGGAATACCCTTGAGACCATCCGATTCCCAACAGTCAGCTGCCATCATTGTCCCGCATCATTTGCTCATTTATGACTAATAATTGAGGAAAAGTATGGAGGAGATCTGCGGAGAAACAAATCGTCCTTGGCAAGCTGACAGACGGGGGGAGCGATGGATAATGAAGAGTATCAAATCGGAAGTATTATAGCATCATTTTCATGTTTTATGACTAATGAGGGACCAGAAATGAAAATGGAATGTAATGTTTCGCAGCTAAGAAAAAATACTACTGCTTTCAGAAATGTCAGCAAGTCAAATTTTTGAATTCAAAAGTCKGAGGTCGGAATTCTTGACATCTCTAACAGCTATATCATAAAAATGCTGAAAATAACAAAATTAACTCAAATACAATGTGTACCGCTTTAAAACGTTTATCACTCTTTGCTGGAACCCTTAAAACAATTCTGAAATGACGCTATTATTCTGTTTAGTTTACTCTATTCTATAGTTTTCAGGTAAACCGAAAAACTCTGAACTTTTTTTGAAGGATTTTGAAGTTTCCATGAAAATGTCTCAATATGAAGTACCTTAACTGTACTTTGTCATATTTTAGTAGGATTCGGAAACGGTCTGCATCACTATCTGAACAGCTTGCTGTCAGAAGTTGCGAGCGACGGTCGAGTCGAGAAAAGAATTTGATATCTGTTGGTTTACAAGTTTCCCTGGAAAACGATATCAGTTAATACATCTCACGGTGTGGTCAAGATTCTCATACTTGCCCGTTCTTCACTTGATTTGATTTTAGAGAGACCCTATCAATCAAGGGTTTTACCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGAGTATCAAATCGGAAGTA</pcr_primer_p1>
		<pcr_primer_p2>TTTAAAGCGGTACACATTGTATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGAAGAGTATCAAATCGGAAGTATTATAGCATCATTTTCATGTTTTATGACTAATGAGGGACCAGAAATGAAAATGGAATGTAATGTTTCGCAGCTAAGAAAAAATACTACTGCTTTCAGAAATGTCAGCAAGTCAAATTTTTGAATTCAAAAGTCGGAGGTCGGAATTCTTGACATCTCTAACAGCTATATCATAAAAATGCTGAAAATAACAAAATTAACTCAAATACAATGTGTACCGCTTTAAA</canonical_amplicon>
		<polymorphic_amplicon>TGAAGAGTATCAAATCGGAAGTATTATAGCATCATTTTCATGTTTTATGACTAATGAGGGACCAGAAATGAAAATGGAATGTAATGTTTCGCAGCTAAGAAAAAATACTACTGCTTTCAGAAATGTCAGCAAGTCAAATTTTTGAATTCAAAAGTCKGAGGTCGGAATTCTTGACATCTCTAACAGCTATATCATAAAAATGCTGAAAATAACAAAATTAACTCAAATACAATGTGTACCGCTTTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24835</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>385844</contig_pos>
        <strand>+</strand>
        <context>CTCCAATAGT[C/T]ATGTGGAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTCGTTTGCTGATCCGGCAAGAATCACATATTGACGGTCTCCAATAGT</left_flank>
        <right_flank>ATGTGGAACTCGGGTGATGGCTAAAAAAAAAATCGAAATCTGACTAGGAA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAATATCATCGCAATTATCCAATTCCTTCTCCACAGATTCCACACCAGTCAGTGCTGCGTCAATACTGGACAACAACTGGTTAACCGAATTCTCGCTATCCATCATTGAATTGATATTGGCTCCATCCAACGACTGCAATTGCTCGGTGAGCATCTCGGCAAACGCATGAGCATCGCCAATTGTCAAGTTGGCTCTTTCAATGAGCTTTCGGAAATCCGCGTCTTCCTTTGCCGATACAGGTTGGTAGTCGCTGGCCATGGCGATGTCGTGCTCTGGGAGCTCAATGGGTATGATCGAGGCTTCTGCTTCGAGTTGTGGGAGAGAGAAGTTGCAAAAGTCGGGCATCTGGACAGGGAGATACTGGCAAGAGAGCTGAAATTGTCAAAATTTAGTTGGAATTGGAATGGAGAATTGTCACCTTATACAACTCTCGAATAAAATCATCCTTCTCGTTTGCTGATCCGGCAAGAATCACATATTGACGGTCTCCAATAGTTATGTGGAACTCGGGTGATGGCTAAAAAAAAAATCGAAATCTGACTAGGAATCTGCGGAAATCGTGTATTTTTAAGGTTAAGATCTACGATAAGAGCTCGCCCATGTGCTTATTAGAATCTGTCCACAATTTCATACCTTTTTTGGATTGATCCCATCAATTTCTCTGACTTCTCGAAGGTTGAACCGGTCTTTTTTCTTGAATGTATCATCCTTTTCTCCTTTGACAAAGTAGAGCCGTACAGCGATCGGGTGTTCGATAGTAACTACAACTGTGCAGTATTGTAGACAATCAATTCTTTAAAAAATTAAATTTTACCTGCCAAGCAGAGAAGCGTCTGATTTTTCTTCTTCTTTCCGTCCAATTTATTCACATTCACAATCGCCTGAATCCGTTCATCGTCCTTCTGGAAGAGTTGTCGTTGGATGATCTTCCTAATTGCAGACATTTGCTTCTGAAATAATTTTTAATGATGATTTTAACGATGAATCAGTGTAAAAA</canonical>
            <polymorphic>CAGAATATCATCGCAATTATCCAATTCCTTCTCCACAGATTCCACACCAGTCAGTGCTGCGTCAATACTGGACAACAACTGGTTAACCGAATTCTCGCTATCCATCATTGAATTGATATTGGCTCCATCCAACGACTGCAATTGCTCGGTGAGCATCTCGGCAAACGCATGAGCATCGCCAATTGTCAAGTTGGCTCTTTCAATGAGCTTTCGGAAATCCGCGTCTTCCTTTGCCGATACAGGTTGGTAGTCGCTGGCCATGGCGATGTCGTGCTCTGGGAGCTCAATGGGTATGATCGAGGCTTCTGCTTCGAGTTGTGGGAGAGAGAAGTTGCAAAAGTCGGGCATCTGGACAGGGAGATACTGGCAAGAGAGCTGAAATTGTCAAAATTTAGTTGGAATTGGAATGGAGAATTGTCACCTTATACAACTCTCGAATAAAATCATCCTTCTCGTTTGCTGATCCGGCAAGAATCACATATTGACGGTCTCCAATAGTYATGTGGAACTCGGGTGATGGCTAAAAAAAAAATCGAAATCTGACTAGGAATCTGCGGAAATCGTGTATTTTTAAGGTTAAGATCTACGATAAGAGCTCGCCCATGTGCTTATTAGAATCTGTCCACAATTTCATACCTTTTTTGGATTGATCCCATCAATTTCTCTGACTTCTCGAAGGTTGAACCGGTCTTTTTTCTTGAATGTATCATCCTTTTCTCCTTTGACAAAGTAGAGCCGTACAGCGATCGGGTGTTCGATAGTAACTACAACTGTGCAGTATTGTAGACAATCAATTCTTTAAAAAATTAAATTTTACCTGCCAAGCAGAGAAGCGTCTGATTTTTCTTCTTCTTTCCGTCCAATTTATTCACATTCACAATCGCCTGAATCCGTTCATCGTCCTTCTGGAAGAGTTGTCGTTGGATGATCTTCCTAATTGCAGACATTTGCTTCTGAAATAATTTTTAATGATGATTTTAACGATGAATCAGTGTAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTCAAAATTTAGTTGGAATTG</pcr_primer_p1>
		<pcr_primer_p2>TGGACAGATTCTAATAAGCACAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTGTCAAAATTTAGTTGGAATTGGAATGGAGAATTGTCACCTTATACAACTCTCGAATAAAATCATCCTTCTCGTTTGCTGATCCGGCAAGAATCACATATTGACGGTCTCCAATAGTTATGTGGAACTCGGGTGATGGCTAAAAAAAAAATCGAAATCTGACTAGGAATCTGCGGAAATCGTGTATTTTTAAGGTTAAGATCTACGATAAGAGCTCGCCCATGTGCTTATTAGAATCTGTCCA</canonical_amplicon>
		<polymorphic_amplicon>TTGTCAAAATTTAGTTGGAATTGGAATGGAGAATTGTCACCTTATACAACTCTCGAATAAAATCATCCTTCTCGTTTGCTGATCCGGCAAGAATCACATATTGACGGTCTCCAATAGTYATGTGGAACTCGGGTGATGGCTAAAAAAAAAATCGAAATCTGACTAGGAATCTGCGGAAATCGTGTATTTTTAAGGTTAAGATCTACGATAAGAGCTCGCCCATGTGCTTATTAGAATCTGTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24836</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>385867</contig_pos>
        <strand>+</strand>
        <context>GGTGATGGCT[A/G]AAAAAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCACATATTGACGGTCTCCAATAGTTATGTGGAACTCGGGTGATGGCT</left_flank>
        <right_flank>AAAAAAAAATCGAAATCTGACTAGGAATCTGCGGAAATCGTGTATTTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCCTTCTCCACAGATTCCACACCAGTCAGTGCTGCGTCAATACTGGACAACAACTGGTTAACCGAATTCTCGCTATCCATCATTGAATTGATATTGGCTCCATCCAACGACTGCAATTGCTCGGTGAGCATCTCGGCAAACGCATGAGCATCGCCAATTGTCAAGTTGGCTCTTTCAATGAGCTTTCGGAAATCCGCGTCTTCCTTTGCCGATACAGGTTGGTAGTCGCTGGCCATGGCGATGTCGTGCTCTGGGAGCTCAATGGGTATGATCGAGGCTTCTGCTTCGAGTTGTGGGAGAGAGAAGTTGCAAAAGTCGGGCATCTGGACAGGGAGATACTGGCAAGAGAGCTGAAATTGTCAAAATTTAGTTGGAATTGGAATGGAGAATTGTCACCTTATACAACTCTCGAATAAAATCATCCTTCTCGTTTGCTGATCCGGCAAGAATCACATATTGACGGTCTCCAATAGTTATGTGGAACTCGGGTGATGGCTAAAAAAAAAATCGAAATCTGACTAGGAATCTGCGGAAATCGTGTATTTTTAAGGTTAAGATCTACGATAAGAGCTCGCCCATGTGCTTATTAGAATCTGTCCACAATTTCATACCTTTTTTGGATTGATCCCATCAATTTCTCTGACTTCTCGAAGGTTGAACCGGTCTTTTTTCTTGAATGTATCATCCTTTTCTCCTTTGACAAAGTAGAGCCGTACAGCGATCGGGTGTTCGATAGTAACTACAACTGTGCAGTATTGTAGACAATCAATTCTTTAAAAAATTAAATTTTACCTGCCAAGCAGAGAAGCGTCTGATTTTTCTTCTTCTTTCCGTCCAATTTATTCACATTCACAATCGCCTGAATCCGTTCATCGTCCTTCTGGAAGAGTTGTCGTTGGATGATCTTCCTAATTGCAGACATTTGCTTCTGAAATAATTTTTAATGATGATTTTAACGATGAATCAGTGTAAAAAAAGACAAAATGAGCGAAACATTC</canonical>
            <polymorphic>ATTCCTTCTCCACAGATTCCACACCAGTCAGTGCTGCGTCAATACTGGACAACAACTGGTTAACCGAATTCTCGCTATCCATCATTGAATTGATATTGGCTCCATCCAACGACTGCAATTGCTCGGTGAGCATCTCGGCAAACGCATGAGCATCGCCAATTGTCAAGTTGGCTCTTTCAATGAGCTTTCGGAAATCCGCGTCTTCCTTTGCCGATACAGGTTGGTAGTCGCTGGCCATGGCGATGTCGTGCTCTGGGAGCTCAATGGGTATGATCGAGGCTTCTGCTTCGAGTTGTGGGAGAGAGAAGTTGCAAAAGTCGGGCATCTGGACAGGGAGATACTGGCAAGAGAGCTGAAATTGTCAAAATTTAGTTGGAATTGGAATGGAGAATTGTCACCTTATACAACTCTCGAATAAAATCATCCTTCTCGTTTGCTGATCCGGCAAGAATCACATATTGACGGTCTCCAATAGTTATGTGGAACTCGGGTGATGGCTRAAAAAAAAATCGAAATCTGACTAGGAATCTGCGGAAATCGTGTATTTTTAAGGTTAAGATCTACGATAAGAGCTCGCCCATGTGCTTATTAGAATCTGTCCACAATTTCATACCTTTTTTGGATTGATCCCATCAATTTCTCTGACTTCTCGAAGGTTGAACCGGTCTTTTTTCTTGAATGTATCATCCTTTTCTCCTTTGACAAAGTAGAGCCGTACAGCGATCGGGTGTTCGATAGTAACTACAACTGTGCAGTATTGTAGACAATCAATTCTTTAAAAAATTAAATTTTACCTGCCAAGCAGAGAAGCGTCTGATTTTTCTTCTTCTTTCCGTCCAATTTATTCACATTCACAATCGCCTGAATCCGTTCATCGTCCTTCTGGAAGAGTTGTCGTTGGATGATCTTCCTAATTGCAGACATTTGCTTCTGAAATAATTTTTAATGATGATTTTAACGATGAATCAGTGTAAAAAAAGACAAAATGAGCGAAACATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAATCACATATTGACGGTCT</pcr_primer_p1>
		<pcr_primer_p2>GAGAAAAGGATGATACATTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAATCACATATTGACGGTCTCCAATAGTTATGTGGAACTCGGGTGATGGCTAAAAAAAAAATCGAAATCTGACTAGGAATCTGCGGAAATCGTGTATTTTTAAGGTTAAGATCTACGATAAGAGCTCGCCCATGTGCTTATTAGAATCTGTCCACAATTTCATACCTTTTTTGGATTGATCCCATCAATTTCTCTGACTTCTCGAAGGTTGAACCGGTCTTTTTTCTTGAATGTATCATCCTTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>AAGAATCACATATTGACGGTCTCCAATAGTTATGTGGAACTCGGGTGATGGCTRAAAAAAAAATCGAAATCTGACTAGGAATCTGCGGAAATCGTGTATTTTTAAGGTTAAGATCTACGATAAGAGCTCGCCCATGTGCTTATTAGAATCTGTCCACAATTTCATACCTTTTTTGGATTGATCCCATCAATTTCTCTGACTTCTCGAAGGTTGAACCGGTCTTTTTTCTTGAATGTATCATCCTTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24837</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>389517</contig_pos>
        <strand>+</strand>
        <context>CGCTTTGAAG[C/T]GAATATTGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACCATGAATCATGATCAAGTGGTCACTTGCTTGCTGCAACGCTTTGAAG</left_flank>
        <right_flank>GAATATTGCATTCCGAGCAAAACCAATTGAAGAACTGTGGATGATGCTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAATATTCACCTGTTTCGAACGTTGGTGTATGTCAACGTCTTATACACAGTAGTTGCTCCCATGTAGCCATCTAGCGGAACACGCTTGATGTACCGACCATAGATGAAGGTGCTTTTCAAGCATGAGATCAAATCCTCGAATTCGGAAGCATCAGCAGTGGTAAGAAGATCACTCTTTGCCTCGTTGTAGCAAGCCAAACTGACGTTTCCAGCAACCACTGCTTGCAGTTCGCATTTTGCAAACAGGTAGTAAGCAGTTGTCATGATGGTCTGCTTTCCACGAGTTTCCAGGAATTCCCTGATGAAATCCGACGAGCGACGAGTGATGATTTGTCCCAGCAACTGTCCTGACGGCTTCTTGACCGGATCATGAATGTTGCCAAACTGCAAGATTAATGTAAAAAATCACGTTTTACCTTTGAGTCACTCACCACTGGCATTCTACCACAACCATGAATCATGATCAAGTGGTCACTTGCTTGCTGCAACGCTTTGAAGCGAATATTGCATTCCGAGCAAAACCAATTGAAGAACTGTGGATGATGCTTGGTCTCATGGTATTCCAGAGCAAATTGGGAGACAAAATCTTCGTTGCATCCACAACGAAGCATTGGGAACTGACGAGTCTTGGTCACTGGTCTAACTGGCGCTTCCATTTTGAGTGTTGGCATTTCCGTGACTTTTGGTGGTGTTGGTTCTGGAGGTGAAATATCAAGTGGAGGTGTCAGTGGTAAGAAATCGAGCTGTGGAAGGGATGAGACGTCTGTGCAGAGCTTTCTGTCAAACAAGTTCTCATCTGTATACCAAGGATCATCCTTGGATAATGGTTCTTCTTCCTCTGGTTTGTCCTCCTCATCATCCGTGTCCATATACCGTTTGATTCCCTCGAAAATGTCCAGCAAAACATTCTCGAATGGCTCTGGCTCCAGTCCACTAATGAATGGATCATACCCCGGTCTGAGGTCCTCCATGAACATGATCACCCGGAATACTTCCTAC</canonical>
            <polymorphic>CTAATATTCACCTGTTTCGAACGTTGGTGTATGTCAACGTCTTATACACAGTAGTTGCTCCCATGTAGCCATCTAGCGGAACACGCTTGATGTACCGACCATAGATGAAGGTGCTTTTCAAGCATGAGATCAAATCCTCGAATTCGGAAGCATCAGCAGTGGTAAGAAGATCACTCTTTGCCTCGTTGTAGCAAGCCAAACTGACGTTTCCAGCAACCACTGCTTGCAGTTCGCATTTTGCAAACAGGTAGTAAGCAGTTGTCATGATGGTCTGCTTTCCACGAGTTTCCAGGAATTCCCTGATGAAATCCGACGAGCGACGAGTGATGATTTGTCCCAGCAACTGTCCTGACGGCTTCTTGACCGGATCATGAATGTTGCCAAACTGCAAGATTAATGTAAAAAATCACGTTTTACCTTTGAGTCACTCACCACTGGCATTCTACCACAACCATGAATCATGATCAAGTGGTCACTTGCTTGCTGCAACGCTTTGAAGYGAATATTGCATTCCGAGCAAAACCAATTGAAGAACTGTGGATGATGCTTGGTCTCATGGTATTCCAGAGCAAATTGGGAGACAAAATCTTCGTTGCATCCACAACGAAGCATTGGGAACTGACGAGTCTTGGTCACTGGTCTAACTGGCGCTTCCATTTTGAGTGTTGGCATTTCCGTGACTTTTGGTGGTGTTGGTTCTGGAGGTGAAATATCAAGTGGAGGTGTCAGTGGTAAGAAATCGAGCTGTGGAAGGGATGAGACGTCTGTGCAGAGCTTTCTGTCAAACAAGTTCTCATCTGTATACCAAGGATCATCCTTGGATAATGGTTCTTCTTCCTCTGGTTTGTCCTCCTCATCATCCGTGTCCATATACCGTTTGATTCCCTCGAAAATGTCCAGCAAAACATTCTCGAATGGCTCTGGCTCCAGTCCACTAATGAATGGATCATACCCCGGTCTGAGGTCCTCCATGAACATGATCACCCGGAATACTTCCTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>495 286 100 82 37</canonical_bands>
                <polymorphic_bands>486 295 100 82 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCACGTTTTACCTTTGA</pcr_primer_p1>
		<pcr_primer_p2>GTTAGACCAGTGACCAAGACTC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCACGTTTTACCTTTGAGTCACTCACCACTGGCATTCTACCACAACCATGAATCATGATCAAGTGGTCACTTGCTTGCTGCAACGCTTTGAAGCGAATATTGCATTCCGAGCAAAACCAATTGAAGAACTGTGGATGATGCTTGGTCTCATGGTATTCCAGAGCAAATTGGGAGACAAAATCTTCGTTGCATCCACAACGAAGCATTGGGAACTGACGAGTCTTGGTCACTGGTCTAAC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCACGTTTTACCTTTGAGTCACTCACCACTGGCATTCTACCACAACCATGAATCATGATCAAGTGGTCACTTGCTTGCTGCAACGCTTTGAAGYGAATATTGCATTCCGAGCAAAACCAATTGAAGAACTGTGGATGATGCTTGGTCTCATGGTATTCCAGAGCAAATTGGGAGACAAAATCTTCGTTGCATCCACAACGAAGCATTGGGAACTGACGAGTCTTGGTCACTGGTCTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24838</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>389640</contig_pos>
        <strand>+</strand>
        <context>TGGGAACTGA[C/T]GAGTCTTGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGGGAGACAAAATCTTCGTTGCATCCACAACGAAGCATTGGGAACTGA</left_flank>
        <right_flank>GAGTCTTGGTCACTGGTCTAACTGGCGCTTCCATTTTGAGTGTTGGCATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAGATCAAATCCTCGAATTCGGAAGCATCAGCAGTGGTAAGAAGATCACTCTTTGCCTCGTTGTAGCAAGCCAAACTGACGTTTCCAGCAACCACTGCTTGCAGTTCGCATTTTGCAAACAGGTAGTAAGCAGTTGTCATGATGGTCTGCTTTCCACGAGTTTCCAGGAATTCCCTGATGAAATCCGACGAGCGACGAGTGATGATTTGTCCCAGCAACTGTCCTGACGGCTTCTTGACCGGATCATGAATGTTGCCAAACTGCAAGATTAATGTAAAAAATCACGTTTTACCTTTGAGTCACTCACCACTGGCATTCTACCACAACCATGAATCATGATCAAGTGGTCACTTGCTTGCTGCAACGCTTTGAAGCGAATATTGCATTCCGAGCAAAACCAATTGAAGAACTGTGGATGATGCTTGGTCTCATGGTATTCCAGAGCAAATTGGGAGACAAAATCTTCGTTGCATCCACAACGAAGCATTGGGAACTGACGAGTCTTGGTCACTGGTCTAACTGGCGCTTCCATTTTGAGTGTTGGCATTTCCGTGACTTTTGGTGGTGTTGGTTCTGGAGGTGAAATATCAAGTGGAGGTGTCAGTGGTAAGAAATCGAGCTGTGGAAGGGATGAGACGTCTGTGCAGAGCTTTCTGTCAAACAAGTTCTCATCTGTATACCAAGGATCATCCTTGGATAATGGTTCTTCTTCCTCTGGTTTGTCCTCCTCATCATCCGTGTCCATATACCGTTTGATTCCCTCGAAAATGTCCAGCAAAACATTCTCGAATGGCTCTGGCTCCAGTCCACTAATGAATGGATCATACCCCGGTCTGAGGTCCTCCATGAACATGATCACCCGGAATACTTCCTACAAAAAACTATATTGGTTGGCAATTACCGAAAAAAAAAACAGTAGTGGTGGTCAGAATAACGCCTGGGGGAGGGGAGCGAGAGAAAAATGGCGCGTAGAGGGGGAATGCAAAAAAAACGGGGAC</canonical>
            <polymorphic>ATGAGATCAAATCCTCGAATTCGGAAGCATCAGCAGTGGTAAGAAGATCACTCTTTGCCTCGTTGTAGCAAGCCAAACTGACGTTTCCAGCAACCACTGCTTGCAGTTCGCATTTTGCAAACAGGTAGTAAGCAGTTGTCATGATGGTCTGCTTTCCACGAGTTTCCAGGAATTCCCTGATGAAATCCGACGAGCGACGAGTGATGATTTGTCCCAGCAACTGTCCTGACGGCTTCTTGACCGGATCATGAATGTTGCCAAACTGCAAGATTAATGTAAAAAATCACGTTTTACCTTTGAGTCACTCACCACTGGCATTCTACCACAACCATGAATCATGATCAAGTGGTCACTTGCTTGCTGCAACGCTTTGAAGCGAATATTGCATTCCGAGCAAAACCAATTGAAGAACTGTGGATGATGCTTGGTCTCATGGTATTCCAGAGCAAATTGGGAGACAAAATCTTCGTTGCATCCACAACGAAGCATTGGGAACTGAYGAGTCTTGGTCACTGGTCTAACTGGCGCTTCCATTTTGAGTGTTGGCATTTCCGTGACTTTTGGTGGTGTTGGTTCTGGAGGTGAAATATCAAGTGGAGGTGTCAGTGGTAAGAAATCGAGCTGTGGAAGGGATGAGACGTCTGTGCAGAGCTTTCTGTCAAACAAGTTCTCATCTGTATACCAAGGATCATCCTTGGATAATGGTTCTTCTTCCTCTGGTTTGTCCTCCTCATCATCCGTGTCCATATACCGTTTGATTCCCTCGAAAATGTCCAGCAAAACATTCTCGAATGGCTCTGGCTCCAGTCCACTAATGAATGGATCATACCCCGGTCTGAGGTCCTCCATGAACATGATCACCCGGAATACTTCCTACAAAAAACTATATTGGTTGGCAATTACCGAAAAAAAAAACAGTAGTGGTGGTCAGAATAACGCCTGGGGGAGGGGAGCGAGAGAAAAATGGCGCGTAGAGGGGGAATGCAAAAAAAACGGGGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGGTATTCCAGAGCAAAT</pcr_primer_p1>
		<pcr_primer_p2>TACAGATGAGAACTTGTTTGACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CATGGTATTCCAGAGCAAATTGGGAGACAAAATCTTCGTTGCATCCACAACGAAGCATTGGGAACTGACGAGTCTTGGTCACTGGTCTAACTGGCGCTTCCATTTTGAGTGTTGGCATTTCCGTGACTTTTGGTGGTGTTGGTTCTGGAGGTGAAATATCAAGTGGAGGTGTCAGTGGTAAGAAATCGAGCTGTGGAAGGGATGAGACGTCTGTGCAGAGCTTTCTGTCAAACAAGTTCTCATCTGTA</canonical_amplicon>
		<polymorphic_amplicon>CATGGTATTCCAGAGCAAATTGGGAGACAAAATCTTCGTTGCATCCACAACGAAGCATTGGGAACTGAYGAGTCTTGGTCACTGGTCTAACTGGCGCTTCCATTTTGAGTGTTGGCATTTCCGTGACTTTTGGTGGTGTTGGTTCTGGAGGTGAAATATCAAGTGGAGGTGTCAGTGGTAAGAAATCGAGCTGTGGAAGGGATGAGACGTCTGTGCAGAGCTTTCTGTCAAACAAGTTCTCATCTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24839</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>411653</contig_pos>
        <strand>+</strand>
        <context>TCACGGATTT[A/C]TGGAGCCAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTGAGGATTCTCCAGTTGTCGCGGAGTTGAGCAAGCTTGTCACGGATTT</left_flank>
        <right_flank>TGGAGCCAAGAAGTGACCTTGTTGGATCATATCATTGGCAGCGCTGCTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTGGCTCGATTCTCTTCACATAAGCAGCTGGAACGAATCCTTGACGATCGTTGACCTCAACCTTCCACCAGTCCTTGTTGCTAGCGTTGAGAAGAGTGAGAACGTCTCCCTTCTTCATGGAAACCTCACGTGGAGATTTCTCCTGGTAGTCGTACAAAGCCAAGACACAGTCACGTCCCAACTGTCCCATTGGTTGCTCCTGGTACTTGCATTGAGAAGCTTGCTTACGAAGATCCTCAATGGTTCCCTTGAAAGCTTCCAAGTCAGACAACAGAGCACGGTGCTTCTTGAGAAGGGCCTCAGCCGAGTCTTCATCCTTTCCATAGTCGGTGGATCCAACGATTGGTTCCTTCTCACTCATCCAAGCGTCAGCCTCGTTGGCATCAGACAAGTATTGATGGGCTTGAAGGGAGTCATCGAGTTCTCCACGTCTCTTTTCAGCCTTGCTCTTGAGGATTCTCCAGTTGTCGCGGAGTTGAGCAAGCTTGTCACGGATTTCTGGAGCCAAGAAGTGACCTTGTTGGATCATATCATTGGCAGCGCTGCTAACGCTCTCGATTTGGCTGTCATGGTTGGCAATCTCAGCGATCAGAGCCTGTTGTTTTTTGATCAAGTTTTGAACTCCGATCAAGTCACGTCCACGGTTGGTCGATCCAGCAACCTGCTCCTTCTCACGAATCCAAGCCAACTCGTCTTCGATGTCACGGAAGAGTTGGTTACCTTGAAGAGATTCTCCAAGCTTTCTCTTTCTCTTCTCGAGTGGATCACGCAGAGCATTGTAGCGTTGTTGGAGAGCCTCCTGCTTGCGAATGATGACTGGAGCGTTGAAGTGTTCCTCCTGATGGAATTGTTGAGCGAGGTTCCTGATTCCGTCAACACGATCGTTGTGAGCGTTGAAATCAGACTCGAGGAGTCCAATCTTCTTCTGCAGGTTTTGAACCGACACCAAGTCCTTTCCATAGTCCTCCGAAGCAACTTGTCCTTCAAGCTCGCTGAGCC</canonical>
            <polymorphic>CCTGGCTCGATTCTCTTCACATAAGCAGCTGGAACGAATCCTTGACGATCGTTGACCTCAACCTTCCACCAGTCCTTGTTGCTAGCGTTGAGAAGAGTGAGAACGTCTCCCTTCTTCATGGAAACCTCACGTGGAGATTTCTCCTGGTAGTCGTACAAAGCCAAGACACAGTCACGTCCCAACTGTCCCATTGGTTGCTCCTGGTACTTGCATTGAGAAGCTTGCTTACGAAGATCCTCAATGGTTCCCTTGAAAGCTTCCAAGTCAGACAACAGAGCACGGTGCTTCTTGAGAAGGGCCTCAGCCGAGTCTTCATCCTTTCCATAGTCGGTGGATCCAACGATTGGTTCCTTCTCACTCATCCAAGCGTCAGCCTCGTTGGCATCAGACAAGTATTGATGGGCTTGAAGGGAGTCATCGAGTTCTCCACGTCTCTTTTCAGCCTTGCTCTTGAGGATTCTCCAGTTGTCGCGGAGTTGAGCAAGCTTGTCACGGATTTMTGGAGCCAAGAAGTGACCTTGTTGGATCATATCATTGGCAGCGCTGCTAACGCTCTCGATTTGGCTGTCATGGTTGGCAATCTCAGCGATCAGAGCCTGTTGTTTTTTGATCAAGTTTTGAACTCCGATCAAGTCACGTCCACGGTTGGTCGATCCAGCAACCTGCTCCTTCTCACGAATCCAAGCCAACTCGTCTTCGATGTCACGGAAGAGTTGGTTACCTTGAAGAGATTCTCCAAGCTTTCTCTTTCTCTTCTCGAGTGGATCACGCAGAGCATTGTAGCGTTGTTGGAGAGCCTCCTGCTTGCGAATGATGACTGGAGCGTTGAAGTGTTCCTCCTGATGGAATTGTTGAGCGAGGTTCCTGATTCCGTCAACACGATCGTTGTGAGCGTTGAAATCAGACTCGAGGAGTCCAATCTTCTTCTGCAGGTTTTGAACCGACACCAAGTCCTTTCCATAGTCCTCCGAAGCAACTTGTCCTTCAAGCTCGCTGAGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>288 162 136 119 83 82 55 50 25</canonical_bands>
                <polymorphic_bands>288 162 136 119 105 83 82 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAGTATTGATGGGCTTGA</pcr_primer_p1>
		<pcr_primer_p2>GACTTGATCGGAGTTCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACAAGTATTGATGGGCTTGAAGGGAGTCATCGAGTTCTCCACGTCTCTTTTCAGCCTTGCTCTTGAGGATTCTCCAGTTGTCGCGGAGTTGAGCAAGCTTGTCACGGATTTCTGGAGCCAAGAAGTGACCTTGTTGGATCATATCATTGGCAGCGCTGCTAACGCTCTCGATTTGGCTGTCATGGTTGGCAATCTCAGCGATCAGAGCCTGTTGTTTTTTGATCAAGTTTTGAACTCCGATCAAGTC</canonical_amplicon>
		<polymorphic_amplicon>ACAAGTATTGATGGGCTTGAAGGGAGTCATCGAGTTCTCCACGTCTCTTTTCAGCCTTGCTCTTGAGGATTCTCCAGTTGTCGCGGAGTTGAGCAAGCTTGTCACGGATTTMTGGAGCCAAGAAGTGACCTTGTTGGATCATATCATTGGCAGCGCTGCTAACGCTCTCGATTTGGCTGTCATGGTTGGCAATCTCAGCGATCAGAGCCTGTTGTTTTTTGATCAAGTTTTGAACTCCGATCAAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24840</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>433976</contig_pos>
        <strand>+</strand>
        <context>CCCAACGGCC[C/T]GATCTACTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGATCTGCTGACTCGAGTCAAATATTAGAAATTCAGTGGTCCCAACGGCC</left_flank>
        <right_flank>GATCTACTTTTTTCTTTTTTCAAGATCTTCTTTATAGGTGACGTGACTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTAAAAGGGCCCTGGTTTTTAAGTGTTAGGCATTCGAAGAAACAAGAAGGTGGGTGGGAATAGCCGGAAGTTGTTTCCTTTTTTTGCTTAAGCGGAATAAATTAGCAAAAACCAGCACTCTAAACAATAGTCTTCCATTGTTACAACTTTATGGACCTCTTTCTCCTTCCAGTGACCCTAAAATTTTGTTTGTTTGGCCGATATCAGCTCTAAACTCTAAACATTTTGCCAAACATCACCTTGGTGCCAAACAGTAAGAAAGTCGTTATGATAAGGAAATGTTTGCGCGGCGCGTACTTCCGCTTGATTAGTAGTTTCAATGACAAACGATCAAGAGGAGGCATTCCCCATTTTTCAATAACAAAAGTCTTGCACTTAGGTCGGAGGGACGGAAAAACCTAATTAATTTATGTGGAGCATCATGATGTGGATCACCATTTCAGCACATGATCTGCTGACTCGAGTCAAATATTAGAAATTCAGTGGTCCCAACGGCCTGATCTACTTTTTTCTTTTTTCAAGATCTTCTTTATAGGTGACGTGACTTGCTTCAAATGTCGCATGTCTGGGGTCGAAGGTCCCAAAGTTTGAAATAAATGCGAAGTGTCATTATACGATTTCACTTACATTTAGCCAAGTGACAAAAAGCTGAAGCAAAGAGATATTTACCTCCTGCAAAGATAGATTTTGAACGACGTTAAAAATAATTTCAAAGAGCTGAAATCCTAGGATGAGTGTTTGCAGGCAGTATACTGTAATAGGTATTATTGACTACTAACACGAGAACCTAAACACCTTGTAAACCCAGATTTTTTGAAATTTTCAGAACATGAAATTTCAGAACAGATTAGCCTATCTAGACACTTCTGCAAATTTTGTAAGCCGCTGCCAGTTTCAGCCGGGTTATATCAATTTCAGTACCGAAATTCGTGTTTCAACGCAAAAATAGTGATTTTCAATGCCGATTTGCTTAGTTTCTAGGTCGTTTCGGAACACGA</canonical>
            <polymorphic>TTTTAAAAGGGCCCTGGTTTTTAAGTGTTAGGCATTCGAAGAAACAAGAAGGTGGGTGGGAATAGCCGGAAGTTGTTTCCTTTTTTTGCTTAAGCGGAATAAATTAGCAAAAACCAGCACTCTAAACAATAGTCTTCCATTGTTACAACTTTATGGACCTCTTTCTCCTTCCAGTGACCCTAAAATTTTGTTTGTTTGGCCGATATCAGCTCTAAACTCTAAACATTTTGCCAAACATCACCTTGGTGCCAAACAGTAAGAAAGTCGTTATGATAAGGAAATGTTTGCGCGGCGCGTACTTCCGCTTGATTAGTAGTTTCAATGACAAACGATCAAGAGGAGGCATTCCCCATTTTTCAATAACAAAAGTCTTGCACTTAGGTCGGAGGGACGGAAAAACCTAATTAATTTATGTGGAGCATCATGATGTGGATCACCATTTCAGCACATGATCTGCTGACTCGAGTCAAATATTAGAAATTCAGTGGTCCCAACGGCCYGATCTACTTTTTTCTTTTTTCAAGATCTTCTTTATAGGTGACGTGACTTGCTTCAAATGTCGCATGTCTGGGGTCGAAGGTCCCAAAGTTTGAAATAAATGCGAAGTGTCATTATACGATTTCACTTACATTTAGCCAAGTGACAAAAAGCTGAAGCAAAGAGATATTTACCTCCTGCAAAGATAGATTTTGAACGACGTTAAAAATAATTTCAAAGAGCTGAAATCCTAGGATGAGTGTTTGCAGGCAGTATACTGTAATAGGTATTATTGACTACTAACACGAGAACCTAAACACCTTGTAAACCCAGATTTTTTGAAATTTTCAGAACATGAAATTTCAGAACAGATTAGCCTATCTAGACACTTCTGCAAATTTTGTAAGCCGCTGCCAGTTTCAGCCGGGTTATATCAATTTCAGTACCGAAATTCGTGTTTCAACGCAAAAATAGTGATTTTCAATGCCGATTTGCTTAGTTTCTAGGTCGTTTCGGAACACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAACAAAAGTCTTGCACTTAGG</pcr_primer_p1>
		<pcr_primer_p2>ACTTCGCATTTATTTCAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATAACAAAAGTCTTGCACTTAGGTCGGAGGGACGGAAAAACCTAATTAATTTATGTGGAGCATCATGATGTGGATCACCATTTCAGCACATGATCTGCTGACTCGAGTCAAATATTAGAAATTCAGTGGTCCCAACGGCCTGATCTACTTTTTTCTTTTTTCAAGATCTTCTTTATAGGTGACGTGACTTGCTTCAAATGTCGCATGTCTGGGGTCGAAGGTCCCAAAGTTTGAAATAAATGCGAAGT</canonical_amplicon>
		<polymorphic_amplicon>ATAACAAAAGTCTTGCACTTAGGTCGGAGGGACGGAAAAACCTAATTAATTTATGTGGAGCATCATGATGTGGATCACCATTTCAGCACATGATCTGCTGACTCGAGTCAAATATTAGAAATTCAGTGGTCCCAACGGCCYGATCTACTTTTTTCTTTTTTCAAGATCTTCTTTATAGGTGACGTGACTTGCTTCAAATGTCGCATGTCTGGGGTCGAAGGTCCCAAAGTTTGAAATAAATGCGAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24841</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>433993</contig_pos>
        <strand></strand>
        <context>CTTTTTTCTT[T/C]TTTCAAGATC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCAAATATTAGAAATTCAGTGGTCCCAACGGCCTGATCTACTTTTTTCTT</left_flank>
        <right_flank>TTTCAAGATCTTCTTTATAGGTGACGTGACTTGCTTCAAATGTCGCATGT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTAAGTGTTAGGCATTCGAAGAAACAAGAAGGTGGGTGGGAATAGCCGGAAGTTGTTTCCTTTTTTTGCTTAAGCGGAATAAATTAGCAAAAACCAGCACTCTAAACAATAGTCTTCCATTGTTACAACTTTATGGACCTCTTTCTCCTTCCAGTGACCCTAAAATTTTGTTTGTTTGGCCGATATCAGCTCTAAACTCTAAACATTTTGCCAAACATCACCTTGGTGCCAAACAGTAAGAAAGTCGTTATGATAAGGAAATGTTTGCGCGGCGCGTACTTCCGCTTGATTAGTAGTTTCAATGACAAACGATCAAGAGGAGGCATTCCCCATTTTTCAATAACAAAAGTCTTGCACTTAGGTCGGAGGGACGGAAAAACCTAATTAATTTATGTGGAGCATCATGATGTGGATCACCATTTCAGCACATGATCTGCTGACTCGAGTCAAATATTAGAAATTCAGTGGTCCCAACGGCCTGATCTACTTTTTTCTTTTTTCAAGATCTTCTTTATAGGTGACGTGACTTGCTTCAAATGTCGCATGTCTGGGGTCGAAGGTCCCAAAGTTTGAAATAAATGCGAAGTGTCATTATACGATTTCACTTACATTTAGCCAAGTGACAAAAAGCTGAAGCAAAGAGATATTTACCTCCTGCAAAGATAGATTTTGAACGACGTTAAAAATAATTTCAAAGAGCTGAAATCCTAGGATGAGTGTTTGCAGGCAGTATACTGTAATAGGTATTATTGACTACTAACACGAGAACCTAAACACCTTGTAAACCCAGATTTTTTGAAATTTTCAGAACATGAAATTTCAGAACAGATTAGCCTATCTAGACACTTCTGCAAATTTTGTAAGCCGCTGCCAGTTTCAGCCGGGTTATATCAATTTCAGTACCGAAATTCGTGTTTCAACGCAAAAATAGTGATTTTCAATGCCGATTTGCTTAGTTTCTAGGTCGTTTCGGAACACGAAATGTTTTGTACCTTAC</canonical>
            <polymorphic>TTTTTAAGTGTTAGGCATTCGAAGAAACAAGAAGGTGGGTGGGAATAGCCGGAAGTTGTTTCCTTTTTTTGCTTAAGCGGAATAAATTAGCAAAAACCAGCACTCTAAACAATAGTCTTCCATTGTTACAACTTTATGGACCTCTTTCTCCTTCCAGTGACCCTAAAATTTTGTTTGTTTGGCCGATATCAGCTCTAAACTCTAAACATTTTGCCAAACATCACCTTGGTGCCAAACAGTAAGAAAGTCGTTATGATAAGGAAATGTTTGCGCGGCGCGTACTTCCGCTTGATTAGTAGTTTCAATGACAAACGATCAAGAGGAGGCATTCCCCATTTTTCAATAACAAAAGTCTTGCACTTAGGTCGGAGGGACGGAAAAACCTAATTAATTTATGTGGAGCATCATGATGTGGATCACCATTTCAGCACATGATCTGCTGACTCGAGTCAAATATTAGAAATTCAGTGGTCCCAACGGCCTGATCTACTTTTTTCTTYTTTCAAGATCTTCTTTATAGGTGACGTGACTTGCTTCAAATGTCGCATGTCTGGGGTCGAAGGTCCCAAAGTTTGAAATAAATGCGAAGTGTCATTATACGATTTCACTTACATTTAGCCAAGTGACAAAAAGCTGAAGCAAAGAGATATTTACCTCCTGCAAAGATAGATTTTGAACGACGTTAAAAATAATTTCAAAGAGCTGAAATCCTAGGATGAGTGTTTGCAGGCAGTATACTGTAATAGGTATTATTGACTACTAACACGAGAACCTAAACACCTTGTAAACCCAGATTTTTTGAAATTTTCAGAACATGAAATTTCAGAACAGATTAGCCTATCTAGACACTTCTGCAAATTTTGTAAGCCGCTGCCAGTTTCAGCCGGGTTATATCAATTTCAGTACCGAAATTCGTGTTTCAACGCAAAAATAGTGATTTTCAATGCCGATTTGCTTAGTTTCTAGGTCGTTTCGGAACACGAAATGTTTTGTACCTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAACAAAAGTCTTGCACTTAGG</pcr_primer_p1>
		<pcr_primer_p2>ACTTCGCATTTATTTCAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATAACAAAAGTCTTGCACTTAGGTCGGAGGGACGGAAAAACCTAATTAATTTATGTGGAGCATCATGATGTGGATCACCATTTCAGCACATGATCTGCTGACTCGAGTCAAATATTAGAAATTCAGTGGTCCCAACGGCCTGATCTACTTTTTTCTTTTTTCAAGATCTTCTTTATAGGTGACGTGACTTGCTTCAAATGTCGCATGTCTGGGGTCGAAGGTCCCAAAGTTTGAAATAAATGCGAAGT</canonical_amplicon>
		<polymorphic_amplicon>ATAACAAAAGTCTTGCACTTAGGTCGGAGGGACGGAAAAACCTAATTAATTTATGTGGAGCATCATGATGTGGATCACCATTTCAGCACATGATCTGCTGACTCGAGTCAAATATTAGAAATTCAGTGGTCCCAACGGCCTGATCTACTTTTTTCTTYTTTCAAGATCTTCTTTATAGGTGACGTGACTTGCTTCAAATGTCGCATGTCTGGGGTCGAAGGTCCCAAAGTTTGAAATAAATGCGAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24842</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>468922</contig_pos>
        <strand></strand>
        <context>CGGGATCAAA[A/C]GATTGTCTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACCAGGGTAAGCATTTTAATATTGAGCTGACAATTTATCCCGGGATCAAA</left_flank>
        <right_flank>GATTGTCTCCCACATAACGGGATTAAGAACCAAATGAAGTCAATATTTCA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAACGGTTTGGGTGGGCATCTGTTAGAAGAAACACTGTAAGTCACAAGTGAAACACTATTTCAAAGTTTCCTTTTTTTCTCAGATCGAGATTTTTTCTACACTGTATGTTCTTTTTTAATAGGTATGCCAGCTGCTCCGGATAATTTCGACCTGCACGCTCTCGCTGATGCGCTCGATGAGTCTTCCGACTCGTCCACGGACAACGAGTCCATTAACGAGGAAATCAGTACAATCCAAAGACCGGACCCTGCCGTTCAGAGAGCCATCGCCCGAGAAGAGGAACTTGAACGCCGAGTAAGAATTAAATATAAATTTGTCTAAAGAGCTGATCAAATTTTTTCAGCGGAACATTGGCATCGCTCATATCAGAAGCTTTGGATACGTCATCCCATATAATATGCTTATTCAGCTTCTGCAGCTGATGAATCACCATCTTGCTCATTTCGAACCAGGGTAAGCATTTTAATATTGAGCTGACAATTTATCCCGGGATCAAAAGATTGTCTCCCACATAACGGGATTAAGAACCAAATGAAGTCAATATTTCAGAATGGAAACTCGTCTAGCTATCCAAGTCTGCCTGGTCTTGTACAACTACCCAGAGGTTATCGATGGATTCAACGATTATCTGTGGCTTGGGATCACTGTTCGCCGCGAGTTGGCAGGCGGCGAATTTCGCTACGTTATCTATTTTCCCGGCGGGTTCTGTGTAAGTCTCTCAAATTGAAACCAACTGGAATTATAATTGAATTTCAGTTCGTCCCCACCCCAGATCAATGTTATGAAAATTTGCCGGAAAACGATGAGGATGATCATGAGGCGTTCATGAGAGAGCGTCAGCAAGGAGAACGGTGGCTGGATAGCAGTAGCTCGGAAAATGAGCAAGAAGGCAATGATACAGATTCGATATCGGAGGGAGAGCATATTCCAAACGGAGAGCATTGAGAATTTGGATTTCATTTCCTATTGTTTTTTAGTAAACCGAACAGCATCTCTCA</canonical>
            <polymorphic>ACAACGGTTTGGGTGGGCATCTGTTAGAAGAAACACTGTAAGTCACAAGTGAAACACTATTTCAAAGTTTCCTTTTTTTCTCAGATCGAGATTTTTTCTACACTGTATGTTCTTTTTTAATAGGTATGCCAGCTGCTCCGGATAATTTCGACCTGCACGCTCTCGCTGATGCGCTCGATGAGTCTTCCGACTCGTCCACGGACAACGAGTCCATTAACGAGGAAATCAGTACAATCCAAAGACCGGACCCTGCCGTTCAGAGAGCCATCGCCCGAGAAGAGGAACTTGAACGCCGAGTAAGAATTAAATATAAATTTGTCTAAAGAGCTGATCAAATTTTTTCAGCGGAACATTGGCATCGCTCATATCAGAAGCTTTGGATACGTCATCCCATATAATATGCTTATTCAGCTTCTGCAGCTGATGAATCACCATCTTGCTCATTTCGAACCAGGGTAAGCATTTTAATATTGAGCTGACAATTTATCCCGGGATCAAAMGATTGTCTCCCACATAACGGGATTAAGAACCAAATGAAGTCAATATTTCAGAATGGAAACTCGTCTAGCTATCCAAGTCTGCCTGGTCTTGTACAACTACCCAGAGGTTATCGATGGATTCAACGATTATCTGTGGCTTGGGATCACTGTTCGCCGCGAGTTGGCAGGCGGCGAATTTCGCTACGTTATCTATTTTCCCGGCGGGTTCTGTGTAAGTCTCTCAAATTGAAACCAACTGGAATTATAATTGAATTTCAGTTCGTCCCCACCCCAGATCAATGTTATGAAAATTTGCCGGAAAACGATGAGGATGATCATGAGGCGTTCATGAGAGAGCGTCAGCAAGGAGAACGGTGGCTGGATAGCAGTAGCTCGGAAAATGAGCAAGAAGGCAATGATACAGATTCGATATCGGAGGGAGAGCATATTCCAAACGGAGAGCATTGAGAATTTGGATTTCATTTCCTATTGTTTTTTAGTAAACCGAACAGCATCTCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGTCTAAAGAGCTGATCAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGTTTCCATTCTGAAATATTGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTGTCTAAAGAGCTGATCAAATTTTTTCAGCGGAACATTGGCATCGCTCATATCAGAAGCTTTGGATACGTCATCCCATATAATATGCTTATTCAGCTTCTGCAGCTGATGAATCACCATCTTGCTCATTTCGAACCAGGGTAAGCATTTTAATATTGAGCTGACAATTTATCCCGGGATCAAAAGATTGTCTCCCACATAACGGGATTAAGAACCAAATGAAGTCAATATTTCAGAATGGAAACTC</canonical_amplicon>
		<polymorphic_amplicon>ATTTGTCTAAAGAGCTGATCAAATTTTTTCAGCGGAACATTGGCATCGCTCATATCAGAAGCTTTGGATACGTCATCCCATATAATATGCTTATTCAGCTTCTGCAGCTGATGAATCACCATCTTGCTCATTTCGAACCAGGGTAAGCATTTTAATATTGAGCTGACAATTTATCCCGGGATCAAAMGATTGTCTCCCACATAACGGGATTAAGAACCAAATGAAGTCAATATTTCAGAATGGAAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24843</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>469061</contig_pos>
        <strand></strand>
        <context>ATCTGTGGCT[T/C]GGGATCACTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTGTACAACTACCCAGAGGTTATCGATGGATTCAACGATTATCTGTGGCT</left_flank>
        <right_flank>GGGATCACTGTTCGCCGCGAGTTGGCAGGCGGCGAATTTCGCTACGTTAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATAATTTCGACCTGCACGCTCTCGCTGATGCGCTCGATGAGTCTTCCGACTCGTCCACGGACAACGAGTCCATTAACGAGGAAATCAGTACAATCCAAAGACCGGACCCTGCCGTTCAGAGAGCCATCGCCCGAGAAGAGGAACTTGAACGCCGAGTAAGAATTAAATATAAATTTGTCTAAAGAGCTGATCAAATTTTTTCAGCGGAACATTGGCATCGCTCATATCAGAAGCTTTGGATACGTCATCCCATATAATATGCTTATTCAGCTTCTGCAGCTGATGAATCACCATCTTGCTCATTTCGAACCAGGGTAAGCATTTTAATATTGAGCTGACAATTTATCCCGGGATCAAAAGATTGTCTCCCACATAACGGGATTAAGAACCAAATGAAGTCAATATTTCAGAATGGAAACTCGTCTAGCTATCCAAGTCTGCCTGGTCTTGTACAACTACCCAGAGGTTATCGATGGATTCAACGATTATCTGTGGCTTGGGATCACTGTTCGCCGCGAGTTGGCAGGCGGCGAATTTCGCTACGTTATCTATTTTCCCGGCGGGTTCTGTGTAAGTCTCTCAAATTGAAACCAACTGGAATTATAATTGAATTTCAGTTCGTCCCCACCCCAGATCAATGTTATGAAAATTTGCCGGAAAACGATGAGGATGATCATGAGGCGTTCATGAGAGAGCGTCAGCAAGGAGAACGGTGGCTGGATAGCAGTAGCTCGGAAAATGAGCAAGAAGGCAATGATACAGATTCGATATCGGAGGGAGAGCATATTCCAAACGGAGAGCATTGAGAATTTGGATTTCATTTCCTATTGTTTTTTAGTAAACCGAACAGCATCTCTCACATTTTTACGGTTGAATATAACTAATTCTCAAATGTTTTTCATTGTTGCCACTATTGTTCTGTAAGGTTATTCTTGACAAATTTTCCAAGTTTGCAAATTCCCGACTTCTTGATGAATTTTTCATTTTATTTCAAAATT</canonical>
            <polymorphic>GGATAATTTCGACCTGCACGCTCTCGCTGATGCGCTCGATGAGTCTTCCGACTCGTCCACGGACAACGAGTCCATTAACGAGGAAATCAGTACAATCCAAAGACCGGACCCTGCCGTTCAGAGAGCCATCGCCCGAGAAGAGGAACTTGAACGCCGAGTAAGAATTAAATATAAATTTGTCTAAAGAGCTGATCAAATTTTTTCAGCGGAACATTGGCATCGCTCATATCAGAAGCTTTGGATACGTCATCCCATATAATATGCTTATTCAGCTTCTGCAGCTGATGAATCACCATCTTGCTCATTTCGAACCAGGGTAAGCATTTTAATATTGAGCTGACAATTTATCCCGGGATCAAAAGATTGTCTCCCACATAACGGGATTAAGAACCAAATGAAGTCAATATTTCAGAATGGAAACTCGTCTAGCTATCCAAGTCTGCCTGGTCTTGTACAACTACCCAGAGGTTATCGATGGATTCAACGATTATCTGTGGCTYGGGATCACTGTTCGCCGCGAGTTGGCAGGCGGCGAATTTCGCTACGTTATCTATTTTCCCGGCGGGTTCTGTGTAAGTCTCTCAAATTGAAACCAACTGGAATTATAATTGAATTTCAGTTCGTCCCCACCCCAGATCAATGTTATGAAAATTTGCCGGAAAACGATGAGGATGATCATGAGGCGTTCATGAGAGAGCGTCAGCAAGGAGAACGGTGGCTGGATAGCAGTAGCTCGGAAAATGAGCAAGAAGGCAATGATACAGATTCGATATCGGAGGGAGAGCATATTCCAAACGGAGAGCATTGAGAATTTGGATTTCATTTCCTATTGTTTTTTAGTAAACCGAACAGCATCTCTCACATTTTTACGGTTGAATATAACTAATTCTCAAATGTTTTTCATTGTTGCCACTATTGTTCTGTAAGGTTATTCTTGACAAATTTTCCAAGTTTGCAAATTCCCGACTTCTTGATGAATTTTTCATTTTATTTCAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCATTTTAATATTGAGCTGACA</pcr_primer_p1>
		<pcr_primer_p2>CCGGGAAAATAGATAACGTAG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AGCATTTTAATATTGAGCTGACAATTTATCCCGGGATCAAAAGATTGTCTCCCACATAACGGGATTAAGAACCAAATGAAGTCAATATTTCAGAATGGAAACTCGTCTAGCTATCCAAGTCTGCCTGGTCTTGTACAACTACCCAGAGGTTATCGATGGATTCAACGATTATCTGTGGCTTGGGATCACTGTTCGCCGCGAGTTGGCAGGCGGCGAATTTCGCTACGTTATCTATTTTCCCGG</canonical_amplicon>
		<polymorphic_amplicon>AGCATTTTAATATTGAGCTGACAATTTATCCCGGGATCAAAAGATTGTCTCCCACATAACGGGATTAAGAACCAAATGAAGTCAATATTTCAGAATGGAAACTCGTCTAGCTATCCAAGTCTGCCTGGTCTTGTACAACTACCCAGAGGTTATCGATGGATTCAACGATTATCTGTGGCTYGGGATCACTGTTCGCCGCGAGTTGGCAGGCGGCGAATTTCGCTACGTTATCTATTTTCCCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24844</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>469099</contig_pos>
        <strand></strand>
        <context>GGCGGCGAAT[T/A]TCGCTACGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTATCTGTGGCTTGGGATCACTGTTCGCCGCGAGTTGGCAGGCGGCGAAT</left_flank>
        <right_flank>TCGCTACGTTATCTATTTTCCCGGCGGGTTCTGTGTAAGTCTCTCAAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAGTCTTCCGACTCGTCCACGGACAACGAGTCCATTAACGAGGAAATCAGTACAATCCAAAGACCGGACCCTGCCGTTCAGAGAGCCATCGCCCGAGAAGAGGAACTTGAACGCCGAGTAAGAATTAAATATAAATTTGTCTAAAGAGCTGATCAAATTTTTTCAGCGGAACATTGGCATCGCTCATATCAGAAGCTTTGGATACGTCATCCCATATAATATGCTTATTCAGCTTCTGCAGCTGATGAATCACCATCTTGCTCATTTCGAACCAGGGTAAGCATTTTAATATTGAGCTGACAATTTATCCCGGGATCAAAAGATTGTCTCCCACATAACGGGATTAAGAACCAAATGAAGTCAATATTTCAGAATGGAAACTCGTCTAGCTATCCAAGTCTGCCTGGTCTTGTACAACTACCCAGAGGTTATCGATGGATTCAACGATTATCTGTGGCTTGGGATCACTGTTCGCCGCGAGTTGGCAGGCGGCGAATTTCGCTACGTTATCTATTTTCCCGGCGGGTTCTGTGTAAGTCTCTCAAATTGAAACCAACTGGAATTATAATTGAATTTCAGTTCGTCCCCACCCCAGATCAATGTTATGAAAATTTGCCGGAAAACGATGAGGATGATCATGAGGCGTTCATGAGAGAGCGTCAGCAAGGAGAACGGTGGCTGGATAGCAGTAGCTCGGAAAATGAGCAAGAAGGCAATGATACAGATTCGATATCGGAGGGAGAGCATATTCCAAACGGAGAGCATTGAGAATTTGGATTTCATTTCCTATTGTTTTTTAGTAAACCGAACAGCATCTCTCACATTTTTACGGTTGAATATAACTAATTCTCAAATGTTTTTCATTGTTGCCACTATTGTTCTGTAAGGTTATTCTTGACAAATTTTCCAAGTTTGCAAATTCCCGACTTCTTGATGAATTTTTCATTTTATTTCAAAATTCAAAGGGTGGAACAAAGTGTGAATACAAATATCTAACA</canonical>
            <polymorphic>ATGAGTCTTCCGACTCGTCCACGGACAACGAGTCCATTAACGAGGAAATCAGTACAATCCAAAGACCGGACCCTGCCGTTCAGAGAGCCATCGCCCGAGAAGAGGAACTTGAACGCCGAGTAAGAATTAAATATAAATTTGTCTAAAGAGCTGATCAAATTTTTTCAGCGGAACATTGGCATCGCTCATATCAGAAGCTTTGGATACGTCATCCCATATAATATGCTTATTCAGCTTCTGCAGCTGATGAATCACCATCTTGCTCATTTCGAACCAGGGTAAGCATTTTAATATTGAGCTGACAATTTATCCCGGGATCAAAAGATTGTCTCCCACATAACGGGATTAAGAACCAAATGAAGTCAATATTTCAGAATGGAAACTCGTCTAGCTATCCAAGTCTGCCTGGTCTTGTACAACTACCCAGAGGTTATCGATGGATTCAACGATTATCTGTGGCTTGGGATCACTGTTCGCCGCGAGTTGGCAGGCGGCGAATWTCGCTACGTTATCTATTTTCCCGGCGGGTTCTGTGTAAGTCTCTCAAATTGAAACCAACTGGAATTATAATTGAATTTCAGTTCGTCCCCACCCCAGATCAATGTTATGAAAATTTGCCGGAAAACGATGAGGATGATCATGAGGCGTTCATGAGAGAGCGTCAGCAAGGAGAACGGTGGCTGGATAGCAGTAGCTCGGAAAATGAGCAAGAAGGCAATGATACAGATTCGATATCGGAGGGAGAGCATATTCCAAACGGAGAGCATTGAGAATTTGGATTTCATTTCCTATTGTTTTTTAGTAAACCGAACAGCATCTCTCACATTTTTACGGTTGAATATAACTAATTCTCAAATGTTTTTCATTGTTGCCACTATTGTTCTGTAAGGTTATTCTTGACAAATTTTCCAAGTTTGCAAATTCCCGACTTCTTGATGAATTTTTCATTTTATTTCAAAATTCAAAGGGTGGAACAAAGTGTGAATACAAATATCTAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>339 160 135 131 77 42 38 22 20 19 17</canonical_bands>
                <polymorphic_bands>416 160 135 131 42 38 22 20 19 17</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>193 160 146 124 75 56 50 42 38 22 20 19 17 16 11 6 5</canonical_bands>
                <polymorphic_bands>243 160 146 124 75 56 42 38 22 20 19 17 16 11 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACATAACGGGATTAAGAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTATAATTCCAGTTGGTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CCACATAACGGGATTAAGAACCAAATGAAGTCAATATTTCAGAATGGAAACTCGTCTAGCTATCCAAGTCTGCCTGGTCTTGTACAACTACCCAGAGGTTATCGATGGATTCAACGATTATCTGTGGCTTGGGATCACTGTTCGCCGCGAGTTGGCAGGCGGCGAATTTCGCTACGTTATCTATTTTCCCGGCGGGTTCTGTGTAAGTCTCTCAAATTGAAACCAACTGGAATTATAAT</canonical_amplicon>
		<polymorphic_amplicon>CCACATAACGGGATTAAGAACCAAATGAAGTCAATATTTCAGAATGGAAACTCGTCTAGCTATCCAAGTCTGCCTGGTCTTGTACAACTACCCAGAGGTTATCGATGGATTCAACGATTATCTGTGGCTTGGGATCACTGTTCGCCGCGAGTTGGCAGGCGGCGAATWTCGCTACGTTATCTATTTTCCCGGCGGGTTCTGTGTAAGTCTCTCAAATTGAAACCAACTGGAATTATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24845</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>469203</contig_pos>
        <strand></strand>
        <context>CCAGATCAAT[G/A]TTATGAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACCAACTGGAATTATAATTGAATTTCAGTTCGTCCCCACCCCAGATCAAT</left_flank>
        <right_flank>TTATGAAAATTTGCCGGAAAACGATGAGGATGATCATGAGGCGTTCATGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACTTGAACGCCGAGTAAGAATTAAATATAAATTTGTCTAAAGAGCTGATCAAATTTTTTCAGCGGAACATTGGCATCGCTCATATCAGAAGCTTTGGATACGTCATCCCATATAATATGCTTATTCAGCTTCTGCAGCTGATGAATCACCATCTTGCTCATTTCGAACCAGGGTAAGCATTTTAATATTGAGCTGACAATTTATCCCGGGATCAAAAGATTGTCTCCCACATAACGGGATTAAGAACCAAATGAAGTCAATATTTCAGAATGGAAACTCGTCTAGCTATCCAAGTCTGCCTGGTCTTGTACAACTACCCAGAGGTTATCGATGGATTCAACGATTATCTGTGGCTTGGGATCACTGTTCGCCGCGAGTTGGCAGGCGGCGAATTTCGCTACGTTATCTATTTTCCCGGCGGGTTCTGTGTAAGTCTCTCAAATTGAAACCAACTGGAATTATAATTGAATTTCAGTTCGTCCCCACCCCAGATCAATGTTATGAAAATTTGCCGGAAAACGATGAGGATGATCATGAGGCGTTCATGAGAGAGCGTCAGCAAGGAGAACGGTGGCTGGATAGCAGTAGCTCGGAAAATGAGCAAGAAGGCAATGATACAGATTCGATATCGGAGGGAGAGCATATTCCAAACGGAGAGCATTGAGAATTTGGATTTCATTTCCTATTGTTTTTTAGTAAACCGAACAGCATCTCTCACATTTTTACGGTTGAATATAACTAATTCTCAAATGTTTTTCATTGTTGCCACTATTGTTCTGTAAGGTTATTCTTGACAAATTTTCCAAGTTTGCAAATTCCCGACTTCTTGATGAATTTTTCATTTTATTTCAAAATTCAAAGGGTGGAACAAAGTGTGAATACAAATATCTAACACATTTCAGTTTTGTCAGAAATTTCAGTTGTCGGAGAATCCCAAAATACGTTTGGAAAAAAAGGAATGGAGAAGCGAAAAAAGAAACGTCACAGCCGGTAAAGCA</canonical>
            <polymorphic>GAACTTGAACGCCGAGTAAGAATTAAATATAAATTTGTCTAAAGAGCTGATCAAATTTTTTCAGCGGAACATTGGCATCGCTCATATCAGAAGCTTTGGATACGTCATCCCATATAATATGCTTATTCAGCTTCTGCAGCTGATGAATCACCATCTTGCTCATTTCGAACCAGGGTAAGCATTTTAATATTGAGCTGACAATTTATCCCGGGATCAAAAGATTGTCTCCCACATAACGGGATTAAGAACCAAATGAAGTCAATATTTCAGAATGGAAACTCGTCTAGCTATCCAAGTCTGCCTGGTCTTGTACAACTACCCAGAGGTTATCGATGGATTCAACGATTATCTGTGGCTTGGGATCACTGTTCGCCGCGAGTTGGCAGGCGGCGAATTTCGCTACGTTATCTATTTTCCCGGCGGGTTCTGTGTAAGTCTCTCAAATTGAAACCAACTGGAATTATAATTGAATTTCAGTTCGTCCCCACCCCAGATCAATRTTATGAAAATTTGCCGGAAAACGATGAGGATGATCATGAGGCGTTCATGAGAGAGCGTCAGCAAGGAGAACGGTGGCTGGATAGCAGTAGCTCGGAAAATGAGCAAGAAGGCAATGATACAGATTCGATATCGGAGGGAGAGCATATTCCAAACGGAGAGCATTGAGAATTTGGATTTCATTTCCTATTGTTTTTTAGTAAACCGAACAGCATCTCTCACATTTTTACGGTTGAATATAACTAATTCTCAAATGTTTTTCATTGTTGCCACTATTGTTCTGTAAGGTTATTCTTGACAAATTTTCCAAGTTTGCAAATTCCCGACTTCTTGATGAATTTTTCATTTTATTTCAAAATTCAAAGGGTGGAACAAAGTGTGAATACAAATATCTAACACATTTCAGTTTTGTCAGAAATTTCAGTTGTCGGAGAATCCCAAAATACGTTTGGAAAAAAAGGAATGGAGAAGCGAAAAAAGAAACGTCACAGCCGGTAAAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTGAAACCAACTGGAATTAT</pcr_primer_p1>
		<pcr_primer_p2>ATAGGAAATGAAATCCAAATTCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATTGAAACCAACTGGAATTATAATTGAATTTCAGTTCGTCCCCACCCCAGATCAATGTTATGAAAATTTGCCGGAAAACGATGAGGATGATCATGAGGCGTTCATGAGAGAGCGTCAGCAAGGAGAACGGTGGCTGGATAGCAGTAGCTCGGAAAATGAGCAAGAAGGCAATGATACAGATTCGATATCGGAGGGAGAGCATATTCCAAACGGAGAGCATTGAGAATTTGGATTTCATTTCCTAT</canonical_amplicon>
		<polymorphic_amplicon>AAATTGAAACCAACTGGAATTATAATTGAATTTCAGTTCGTCCCCACCCCAGATCAATRTTATGAAAATTTGCCGGAAAACGATGAGGATGATCATGAGGCGTTCATGAGAGAGCGTCAGCAAGGAGAACGGTGGCTGGATAGCAGTAGCTCGGAAAATGAGCAAGAAGGCAATGATACAGATTCGATATCGGAGGGAGAGCATATTCCAAACGGAGAGCATTGAGAATTTGGATTTCATTTCCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24846</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>482171</contig_pos>
        <strand>+</strand>
        <context>CATAAAAGGA[A/T]ATAAGAGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGATGTTTTATTACCTACATAGACTCAGTTGAAAATGATTCATAAAAGGA</left_flank>
        <right_flank>ATAAGAGAGAAGGGCAGAGAAAAGAGTGAATTGGCTTGAAGCTGAAGACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGATTCCAATGAAAGATCTCTAAATATTGTCCACTGATAAATTATTATCGTAATAATACTACCATTTCATCAATTTACTAAAATTCTGATTTCTTTGACAGGGATCAAGACAAACGAGCTCAAAGTTGAATGTTCATAGCCTTCTATGACATATGCTGGATCAAAAATACGGTATCTATCATATTACTAGAAAAAGAGATGTTTGAAAAAAATTAACTGATGTTGAAATATCAAATATATCCTATGTTCTTCATCAATCAAGTTTAAAATTTTTCAACTACCGTATCGCCTTTTCCAAATACTGCAATTAATTTTTTTTCCAAAACTACGAGTCCGTCAGCCTCCCACCAGCTATAAATTTCAAAACAGAAAACGTACCTACTATTTTGAGTTCATTGCCCAAATTATCCCAACGATTCATTGCTGGGACAGAATTTCACCGCGGATGTGATGTTTTATTACCTACATAGACTCAGTTGAAAATGATTCATAAAAGGAAATAAGAGAGAAGGGCAGAGAAAAGAGTGAATTGGCTTGAAGCTGAAGACCAAACTTATTTTGTGAAGAGAAACCGAGTTGGGAGTATGGAGGGGATGCGCCGGGAGGAAGGTTTGTGTCGGATCGGGGTGAAAAATTTAATTAAAATGCGAGAGGCAGGCACGGACAAACTTTTTCTCTCCACGTTCCACCTGCCAATGGGATAAACTTGCACTTTTACTGTATTTGAAGTGTCAACATCTCTTCTTTTTTCCTTTTTTTTTGTTTTTCCAGAAGCTTCTTCTTTTGGAGCTATTATGACGAAAAACAGACAGACAGAATGAAAATGAGTAACCGTGAAAAATAATGAAAACACGGAACACTGGAAGGCCATTAATTCCATTTTCAGACAAAAAGCTGAATCATCTTGAGAAATAGAAAAAGAGAAAAAATGGAAGAGACCAGGATCTTGTGGTTTTGGAAGATGAGAGGGTGCTCGGCGATTTTTCATTTAGAAGTCAC</canonical>
            <polymorphic>TCGATTCCAATGAAAGATCTCTAAATATTGTCCACTGATAAATTATTATCGTAATAATACTACCATTTCATCAATTTACTAAAATTCTGATTTCTTTGACAGGGATCAAGACAAACGAGCTCAAAGTTGAATGTTCATAGCCTTCTATGACATATGCTGGATCAAAAATACGGTATCTATCATATTACTAGAAAAAGAGATGTTTGAAAAAAATTAACTGATGTTGAAATATCAAATATATCCTATGTTCTTCATCAATCAAGTTTAAAATTTTTCAACTACCGTATCGCCTTTTCCAAATACTGCAATTAATTTTTTTTCCAAAACTACGAGTCCGTCAGCCTCCCACCAGCTATAAATTTCAAAACAGAAAACGTACCTACTATTTTGAGTTCATTGCCCAAATTATCCCAACGATTCATTGCTGGGACAGAATTTCACCGCGGATGTGATGTTTTATTACCTACATAGACTCAGTTGAAAATGATTCATAAAAGGAWATAAGAGAGAAGGGCAGAGAAAAGAGTGAATTGGCTTGAAGCTGAAGACCAAACTTATTTTGTGAAGAGAAACCGAGTTGGGAGTATGGAGGGGATGCGCCGGGAGGAAGGTTTGTGTCGGATCGGGGTGAAAAATTTAATTAAAATGCGAGAGGCAGGCACGGACAAACTTTTTCTCTCCACGTTCCACCTGCCAATGGGATAAACTTGCACTTTTACTGTATTTGAAGTGTCAACATCTCTTCTTTTTTCCTTTTTTTTTGTTTTTCCAGAAGCTTCTTCTTTTGGAGCTATTATGACGAAAAACAGACAGACAGAATGAAAATGAGTAACCGTGAAAAATAATGAAAACACGGAACACTGGAAGGCCATTAATTCCATTTTCAGACAAAAAGCTGAATCATCTTGAGAAATAGAAAAAGAGAAAAAATGGAAGAGACCAGGATCTTGTGGTTTTGGAAGATGAGAGGGTGCTCGGCGATTTTTCATTTAGAAGTCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCCAAAACTACGAGTCC</pcr_primer_p1>
		<pcr_primer_p2>TTCACAAAATAAGTTTGGTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCCAAAACTACGAGTCCGTCAGCCTCCCACCAGCTATAAATTTCAAAACAGAAAACGTACCTACTATTTTGAGTTCATTGCCCAAATTATCCCAACGATTCATTGCTGGGACAGAATTTCACCGCGGATGTGATGTTTTATTACCTACATAGACTCAGTTGAAAATGATTCATAAAAGGAAATAAGAGAGAAGGGCAGAGAAAAGAGTGAATTGGCTTGAAGCTGAAGACCAAACTTATTTTGTGAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCCAAAACTACGAGTCCGTCAGCCTCCCACCAGCTATAAATTTCAAAACAGAAAACGTACCTACTATTTTGAGTTCATTGCCCAAATTATCCCAACGATTCATTGCTGGGACAGAATTTCACCGCGGATGTGATGTTTTATTACCTACATAGACTCAGTTGAAAATGATTCATAAAAGGAWATAAGAGAGAAGGGCAGAGAAAAGAGTGAATTGGCTTGAAGCTGAAGACCAAACTTATTTTGTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24847</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>482360</contig_pos>
        <strand>+</strand>
        <context>TCCACGTTCC[A/G]CCTGCCAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTAAAATGCGAGAGGCAGGCACGGACAAACTTTTTCTCTCCACGTTCC</left_flank>
        <right_flank>CCTGCCAATGGGATAAACTTGCACTTTTACTGTATTTGAAGTGTCAACAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAAAAGAGATGTTTGAAAAAAATTAACTGATGTTGAAATATCAAATATATCCTATGTTCTTCATCAATCAAGTTTAAAATTTTTCAACTACCGTATCGCCTTTTCCAAATACTGCAATTAATTTTTTTTCCAAAACTACGAGTCCGTCAGCCTCCCACCAGCTATAAATTTCAAAACAGAAAACGTACCTACTATTTTGAGTTCATTGCCCAAATTATCCCAACGATTCATTGCTGGGACAGAATTTCACCGCGGATGTGATGTTTTATTACCTACATAGACTCAGTTGAAAATGATTCATAAAAGGAAATAAGAGAGAAGGGCAGAGAAAAGAGTGAATTGGCTTGAAGCTGAAGACCAAACTTATTTTGTGAAGAGAAACCGAGTTGGGAGTATGGAGGGGATGCGCCGGGAGGAAGGTTTGTGTCGGATCGGGGTGAAAAATTTAATTAAAATGCGAGAGGCAGGCACGGACAAACTTTTTCTCTCCACGTTCCACCTGCCAATGGGATAAACTTGCACTTTTACTGTATTTGAAGTGTCAACATCTCTTCTTTTTTCCTTTTTTTTTGTTTTTCCAGAAGCTTCTTCTTTTGGAGCTATTATGACGAAAAACAGACAGACAGAATGAAAATGAGTAACCGTGAAAAATAATGAAAACACGGAACACTGGAAGGCCATTAATTCCATTTTCAGACAAAAAGCTGAATCATCTTGAGAAATAGAAAAAGAGAAAAAATGGAAGAGACCAGGATCTTGTGGTTTTGGAAGATGAGAGGGTGCTCGGCGATTTTTCATTTAGAAGTCACGGGATTTTTTGTTGGGTTTAAGTAATTTATTTTGGGAGCAAAGCACAAGACTTTAGTGGAGATTCTCAATTGTCGATTTGAAATAAAAGAGTTACCGTAGTTGCTCTAATAGAAGCCCACCTTATACGTGGACTTTGAGTTCCATTATCTCATTTTCTACAAAAGATATCAAATATATGTCAACTGGTA</canonical>
            <polymorphic>AGAAAAAGAGATGTTTGAAAAAAATTAACTGATGTTGAAATATCAAATATATCCTATGTTCTTCATCAATCAAGTTTAAAATTTTTCAACTACCGTATCGCCTTTTCCAAATACTGCAATTAATTTTTTTTCCAAAACTACGAGTCCGTCAGCCTCCCACCAGCTATAAATTTCAAAACAGAAAACGTACCTACTATTTTGAGTTCATTGCCCAAATTATCCCAACGATTCATTGCTGGGACAGAATTTCACCGCGGATGTGATGTTTTATTACCTACATAGACTCAGTTGAAAATGATTCATAAAAGGAAATAAGAGAGAAGGGCAGAGAAAAGAGTGAATTGGCTTGAAGCTGAAGACCAAACTTATTTTGTGAAGAGAAACCGAGTTGGGAGTATGGAGGGGATGCGCCGGGAGGAAGGTTTGTGTCGGATCGGGGTGAAAAATTTAATTAAAATGCGAGAGGCAGGCACGGACAAACTTTTTCTCTCCACGTTCCRCCTGCCAATGGGATAAACTTGCACTTTTACTGTATTTGAAGTGTCAACATCTCTTCTTTTTTCCTTTTTTTTTGTTTTTCCAGAAGCTTCTTCTTTTGGAGCTATTATGACGAAAAACAGACAGACAGAATGAAAATGAGTAACCGTGAAAAATAATGAAAACACGGAACACTGGAAGGCCATTAATTCCATTTTCAGACAAAAAGCTGAATCATCTTGAGAAATAGAAAAAGAGAAAAAATGGAAGAGACCAGGATCTTGTGGTTTTGGAAGATGAGAGGGTGCTCGGCGATTTTTCATTTAGAAGTCACGGGATTTTTTGTTGGGTTTAAGTAATTTATTTTGGGAGCAAAGCACAAGACTTTAGTGGAGATTCTCAATTGTCGATTTGAAATAAAAGAGTTACCGTAGTTGCTCTAATAGAAGCCCACCTTATACGTGGACTTTGAGTTCCATTATCTCATTTTCTACAAAAGATATCAAATATATGTCAACTGGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>159 105 92 92 77 61 59 53 46 36 31 26 23 21 21 20 16 13 13 11 11 7 7</canonical_bands>
                <polymorphic_bands>159 105 92 92 77 61 59 53 46 36 31 30 26 21 21 20 16 13 13 11 11 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAACTTATTTTGTGAAGAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCATAATAGCTCCAAAAGAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCAAACTTATTTTGTGAAGAGAAACCGAGTTGGGAGTATGGAGGGGATGCGCCGGGAGGAAGGTTTGTGTCGGATCGGGGTGAAAAATTTAATTAAAATGCGAGAGGCAGGCACGGACAAACTTTTTCTCTCCACGTTCCACCTGCCAATGGGATAAACTTGCACTTTTACTGTATTTGAAGTGTCAACATCTCTTCTTTTTTCCTTTTTTTTTGTTTTTCCAGAAGCTTCTTCTTTTGGAGCTATTATGA</canonical_amplicon>
		<polymorphic_amplicon>CCAAACTTATTTTGTGAAGAGAAACCGAGTTGGGAGTATGGAGGGGATGCGCCGGGAGGAAGGTTTGTGTCGGATCGGGGTGAAAAATTTAATTAAAATGCGAGAGGCAGGCACGGACAAACTTTTTCTCTCCACGTTCCRCCTGCCAATGGGATAAACTTGCACTTTTACTGTATTTGAAGTGTCAACATCTCTTCTTTTTTCCTTTTTTTTTGTTTTTCCAGAAGCTTCTTCTTTTGGAGCTATTATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24848</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>482417</contig_pos>
        <strand>+</strand>
        <context>ACATCTCTTC[A/T]TTTTTCCTTW</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATGGGATAAACTTGCACTTTTACTGTATTTGAAGTGTCAACATCTCTTC</left_flank>
        <right_flank>TTTTTCCTTTTTTTTTGTTTTTCCAGAAGCTTCTTCTTTTGGAGCTATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCTTCATCAATCAAGTTTAAAATTTTTCAACTACCGTATCGCCTTTTCCAAATACTGCAATTAATTTTTTTTCCAAAACTACGAGTCCGTCAGCCTCCCACCAGCTATAAATTTCAAAACAGAAAACGTACCTACTATTTTGAGTTCATTGCCCAAATTATCCCAACGATTCATTGCTGGGACAGAATTTCACCGCGGATGTGATGTTTTATTACCTACATAGACTCAGTTGAAAATGATTCATAAAAGGAAATAAGAGAGAAGGGCAGAGAAAAGAGTGAATTGGCTTGAAGCTGAAGACCAAACTTATTTTGTGAAGAGAAACCGAGTTGGGAGTATGGAGGGGATGCGCCGGGAGGAAGGTTTGTGTCGGATCGGGGTGAAAAATTTAATTAAAATGCGAGAGGCAGGCACGGACAAACTTTTTCTCTCCACGTTCCACCTGCCAATGGGATAAACTTGCACTTTTACTGTATTTGAAGTGTCAACATCTCTTCTTTTTTCCTTTTTTTTTGTTTTTCCAGAAGCTTCTTCTTTTGGAGCTATTATGACGAAAAACAGACAGACAGAATGAAAATGAGTAACCGTGAAAAATAATGAAAACACGGAACACTGGAAGGCCATTAATTCCATTTTCAGACAAAAAGCTGAATCATCTTGAGAAATAGAAAAAGAGAAAAAATGGAAGAGACCAGGATCTTGTGGTTTTGGAAGATGAGAGGGTGCTCGGCGATTTTTCATTTAGAAGTCACGGGATTTTTTGTTGGGTTTAAGTAATTTATTTTGGGAGCAAAGCACAAGACTTTAGTGGAGATTCTCAATTGTCGATTTGAAATAAAAGAGTTACCGTAGTTGCTCTAATAGAAGCCCACCTTATACGTGGACTTTGAGTTCCATTATCTCATTTTCTACAAAAGATATCAAATATATGTCAACTGGTAGATTATTAATTATAATATCTCCAATATTTTATCAGCGGACAAGTTTTTGATACCTCT</canonical>
            <polymorphic>GTTCTTCATCAATCAAGTTTAAAATTTTTCAACTACCGTATCGCCTTTTCCAAATACTGCAATTAATTTTTTTTCCAAAACTACGAGTCCGTCAGCCTCCCACCAGCTATAAATTTCAAAACAGAAAACGTACCTACTATTTTGAGTTCATTGCCCAAATTATCCCAACGATTCATTGCTGGGACAGAATTTCACCGCGGATGTGATGTTTTATTACCTACATAGACTCAGTTGAAAATGATTCATAAAAGGAAATAAGAGAGAAGGGCAGAGAAAAGAGTGAATTGGCTTGAAGCTGAAGACCAAACTTATTTTGTGAAGAGAAACCGAGTTGGGAGTATGGAGGGGATGCGCCGGGAGGAAGGTTTGTGTCGGATCGGGGTGAAAAATTTAATTAAAATGCGAGAGGCAGGCACGGACAAACTTTTTCTCTCCACGTTCCACCTGCCAATGGGATAAACTTGCACTTTTACTGTATTTGAAGTGTCAACATCTCTTCWTTTTTCCTTTTTTTTTGTTTTTCCAGAAGCTTCTTCTTTTGGAGCTATTATGACGAAAAACAGACAGACAGAATGAAAATGAGTAACCGTGAAAAATAATGAAAACACGGAACACTGGAAGGCCATTAATTCCATTTTCAGACAAAAAGCTGAATCATCTTGAGAAATAGAAAAAGAGAAAAAATGGAAGAGACCAGGATCTTGTGGTTTTGGAAGATGAGAGGGTGCTCGGCGATTTTTCATTTAGAAGTCACGGGATTTTTTGTTGGGTTTAAGTAATTTATTTTGGGAGCAAAGCACAAGACTTTAGTGGAGATTCTCAATTGTCGATTTGAAATAAAAGAGTTACCGTAGTTGCTCTAATAGAAGCCCACCTTATACGTGGACTTTGAGTTCCATTATCTCATTTTCTACAAAAGATATCAAATATATGTCAACTGGTAGATTATTAATTATAATATCTCCAATATTTTATCAGCGGACAAGTTTTTGATACCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAACTTATTTTGTGAAGAGAA</pcr_primer_p1>
		<pcr_primer_p2>GTCATAATAGCTCCAAAAGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CCAAACTTATTTTGTGAAGAGAAACCGAGTTGGGAGTATGGAGGGGATGCGCCGGGAGGAAGGTTTGTGTCGGATCGGGGTGAAAAATTTAATTAAAATGCGAGAGGCAGGCACGGACAAACTTTTTCTCTCCACGTTCCACCTGCCAATGGGATAAACTTGCACTTTTACTGTATTTGAAGTGTCAACATCTCTTCTTTTTTCCTTTTTTTTTGTTTTTCCAGAAGCTTCTTCTTTTGGAGCTATTATGAC</canonical_amplicon>
		<polymorphic_amplicon>CCAAACTTATTTTGTGAAGAGAAACCGAGTTGGGAGTATGGAGGGGATGCGCCGGGAGGAAGGTTTGTGTCGGATCGGGGTGAAAAATTTAATTAAAATGCGAGAGGCAGGCACGGACAAACTTTTTCTCTCCACGTTCCACCTGCCAATGGGATAAACTTGCACTTTTACTGTATTTGAAGTGTCAACATCTCTTCWTTTTTCCTTTTTTTTTGTTTTTCCAGAAGCTTCTTCTTTTGGAGCTATTATGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24849</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>482427</contig_pos>
        <strand></strand>
        <context>WTTTTTCCTT[T/A]TTTTTTGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ACTTGCACTTTTACTGTATTTGAAGTGTCAACATCTCTTCTTTTTTCCTT</left_flank>
        <right_flank>TTTTTTGTTTTTCCAGAAGCTTCTTCTTTTGGAGCTATTATGACGAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCAAGTTTAAAATTTTTCAACTACCGTATCGCCTTTTCCAAATACTGCAATTAATTTTTTTTCCAAAACTACGAGTCCGTCAGCCTCCCACCAGCTATAAATTTCAAAACAGAAAACGTACCTACTATTTTGAGTTCATTGCCCAAATTATCCCAACGATTCATTGCTGGGACAGAATTTCACCGCGGATGTGATGTTTTATTACCTACATAGACTCAGTTGAAAATGATTCATAAAAGGAAATAAGAGAGAAGGGCAGAGAAAAGAGTGAATTGGCTTGAAGCTGAAGACCAAACTTATTTTGTGAAGAGAAACCGAGTTGGGAGTATGGAGGGGATGCGCCGGGAGGAAGGTTTGTGTCGGATCGGGGTGAAAAATTTAATTAAAATGCGAGAGGCAGGCACGGACAAACTTTTTCTCTCCACGTTCCACCTGCCAATGGGATAAACTTGCACTTTTACTGTATTTGAAGTGTCAACATCTCTTCTTTTTTCCTTTTTTTTTGTTTTTCCAGAAGCTTCTTCTTTTGGAGCTATTATGACGAAAAACAGACAGACAGAATGAAAATGAGTAACCGTGAAAAATAATGAAAACACGGAACACTGGAAGGCCATTAATTCCATTTTCAGACAAAAAGCTGAATCATCTTGAGAAATAGAAAAAGAGAAAAAATGGAAGAGACCAGGATCTTGTGGTTTTGGAAGATGAGAGGGTGCTCGGCGATTTTTCATTTAGAAGTCACGGGATTTTTTGTTGGGTTTAAGTAATTTATTTTGGGAGCAAAGCACAAGACTTTAGTGGAGATTCTCAATTGTCGATTTGAAATAAAAGAGTTACCGTAGTTGCTCTAATAGAAGCCCACCTTATACGTGGACTTTGAGTTCCATTATCTCATTTTCTACAAAAGATATCAAATATATGTCAACTGGTAGATTATTAATTATAATATCTCCAATATTTTATCAGCGGACAAGTTTTTGATACCTCTTATCATAACG</canonical>
            <polymorphic>AATCAAGTTTAAAATTTTTCAACTACCGTATCGCCTTTTCCAAATACTGCAATTAATTTTTTTTCCAAAACTACGAGTCCGTCAGCCTCCCACCAGCTATAAATTTCAAAACAGAAAACGTACCTACTATTTTGAGTTCATTGCCCAAATTATCCCAACGATTCATTGCTGGGACAGAATTTCACCGCGGATGTGATGTTTTATTACCTACATAGACTCAGTTGAAAATGATTCATAAAAGGAAATAAGAGAGAAGGGCAGAGAAAAGAGTGAATTGGCTTGAAGCTGAAGACCAAACTTATTTTGTGAAGAGAAACCGAGTTGGGAGTATGGAGGGGATGCGCCGGGAGGAAGGTTTGTGTCGGATCGGGGTGAAAAATTTAATTAAAATGCGAGAGGCAGGCACGGACAAACTTTTTCTCTCCACGTTCCACCTGCCAATGGGATAAACTTGCACTTTTACTGTATTTGAAGTGTCAACATCTCTTCTTTTTTCCTTWTTTTTTGTTTTTCCAGAAGCTTCTTCTTTTGGAGCTATTATGACGAAAAACAGACAGACAGAATGAAAATGAGTAACCGTGAAAAATAATGAAAACACGGAACACTGGAAGGCCATTAATTCCATTTTCAGACAAAAAGCTGAATCATCTTGAGAAATAGAAAAAGAGAAAAAATGGAAGAGACCAGGATCTTGTGGTTTTGGAAGATGAGAGGGTGCTCGGCGATTTTTCATTTAGAAGTCACGGGATTTTTTGTTGGGTTTAAGTAATTTATTTTGGGAGCAAAGCACAAGACTTTAGTGGAGATTCTCAATTGTCGATTTGAAATAAAAGAGTTACCGTAGTTGCTCTAATAGAAGCCCACCTTATACGTGGACTTTGAGTTCCATTATCTCATTTTCTACAAAAGATATCAAATATATGTCAACTGGTAGATTATTAATTATAATATCTCCAATATTTTATCAGCGGACAAGTTTTTGATACCTCTTATCATAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAACCGAGTTGGGAGTAT</pcr_primer_p1>
		<pcr_primer_p2>GTCTGTCTGTTTTTCGTCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGAAACCGAGTTGGGAGTATGGAGGGGATGCGCCGGGAGGAAGGTTTGTGTCGGATCGGGGTGAAAAATTTAATTAAAATGCGAGAGGCAGGCACGGACAAACTTTTTCTCTCCACGTTCCACCTGCCAATGGGATAAACTTGCACTTTTACTGTATTTGAAGTGTCAACATCTCTTCTTTTTTCCTTTTTTTTTGTTTTTCCAGAAGCTTCTTCTTTTGGAGCTATTATGACGAAAAACAGACAGAC</canonical_amplicon>
		<polymorphic_amplicon>AGAAACCGAGTTGGGAGTATGGAGGGGATGCGCCGGGAGGAAGGTTTGTGTCGGATCGGGGTGAAAAATTTAATTAAAATGCGAGAGGCAGGCACGGACAAACTTTTTCTCTCCACGTTCCACCTGCCAATGGGATAAACTTGCACTTTTACTGTATTTGAAGTGTCAACATCTCTTCTTTTTTCCTTWTTTTTTGTTTTTCCAGAAGCTTCTTCTTTTGGAGCTATTATGACGAAAAACAGACAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24850</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>484776</contig_pos>
        <strand></strand>
        <context>atctcagttc[T/C]tgagaaagat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAATGGAAGCTCTTCCAATCCTTTCAATGTGAATTCAATTATCTCAGTTC</left_flank>
        <right_flank>TGAGAAAGATATGAATTTTGCCAACTGAAAAATTATTCACCACAATATCA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCACTATTTTTCGGAATGATCAAAAAGATTTTTTGGTAAGAAGAATTTTCAGGCAGCTGCCAATTGTACGGAAGCACATGGTGACACGGATAGAGTCACTAACCACGTCATTTCTTAACAGAAGTTTGTTTCAATTTGACTCTAGTTAGTAGAAAGCAAATAGAGCCTGTAAGACATGAAAAAGTAGTAAAAATCAGTGAGGTTCAAGCAACTCAGCGGCTTCCAAAAATCGACTATTATCCTGTGATCTGAAACATTTTCTTGTCTTGAATTCAACTAATTACTAACTCGGTTTTTCCTTCATCTCCCAATTACTACAAATGTATGTCCCTGTTATATCTCCTAGTTTCATAGACATTTCACGTGTTAGTGGTTTTCTCCCCTTCGTTGAAATAAATAAATAAATAAATAAAATAAATAAATAAAACTCATTTACCGTTCCATCACTAATGGAAGCTCTTCCAATCCTTTCAATGTGAATTCAATTATCTCAGTTCTTGAGAAAGATATGAATTTTGCCAACTGAAAAATTATTCACCACAATATCATCGGCATTTTTTCAGTTATGAAATTTTTGATATCTTTCACAGGAATTATGAAGCTTGAAATTGACGGTTTAGATAAGTTTCTATCATAAGGAATACAATAATCGAAAACAAAGTAAACCTGAAAGTATGAAAAAATAGTTTCTATAAATCATAAAAAATTAAAGGGAGATCGAAAACGTGTACAATTCTATATTGATAAACCTAAAGCAAAGCAAAAATAAACGCTTTTCTTCATTTCCTGACATTCAAATTCTACAAAATATTTGATTTTTTTTCTAAATTTTTTCATAGGGAAGTCGTCATTTGTGAATTGACCACTAGGCTTGTAGAGGTAATTACGGCTAAGAAATATAACAATTCTCATTTTAAATTTTTAATAAAAATTTACTACAGGTATCTCAAACTACTACAAATCCAATCGATCAGATGAACAAACCACATTACCACTAA</canonical>
            <polymorphic>AACCACTATTTTTCGGAATGATCAAAAAGATTTTTTGGTAAGAAGAATTTTCAGGCAGCTGCCAATTGTACGGAAGCACATGGTGACACGGATAGAGTCACTAACCACGTCATTTCTTAACAGAAGTTTGTTTCAATTTGACTCTAGTTAGTAGAAAGCAAATAGAGCCTGTAAGACATGAAAAAGTAGTAAAAATCAGTGAGGTTCAAGCAACTCAGCGGCTTCCAAAAATCGACTATTATCCTGTGATCTGAAACATTTTCTTGTCTTGAATTCAACTAATTACTAACTCGGTTTTTCCTTCATCTCCCAATTACTACAAATGTATGTCCCTGTTATATCTCCTAGTTTCATAGACATTTCACGTGTTAGTGGTTTTCTCCCCTTCGTTGAAATAAATAAATAAATAAATAAAATAAATAAATAAAACTCATTTACCGTTCCATCACTAATGGAAGCTCTTCCAATCCTTTCAATGTGAATTCAATTATCTCAGTTCYTGAGAAAGATATGAATTTTGCCAACTGAAAAATTATTCACCACAATATCATCGGCATTTTTTCAGTTATGAAATTTTTGATATCTTTCACAGGAATTATGAAGCTTGAAATTGACGGTTTAGATAAGTTTCTATCATAAGGAATACAATAATCGAAAACAAAGTAAACCTGAAAGTATGAAAAAATAGTTTCTATAAATCATAAAAAATTAAAGGGAGATCGAAAACGTGTACAATTCTATATTGATAAACCTAAAGCAAAGCAAAAATAAACGCTTTTCTTCATTTCCTGACATTCAAATTCTACAAAATATTTGATTTTTTTTCTAAATTTTTTCATAGGGAAGTCGTCATTTGTGAATTGACCACTAGGCTTGTAGAGGTAATTACGGCTAAGAAATATAACAATTCTCATTTTAAATTTTTAATAAAAATTTACTACAGGTATCTCAAACTACTACAAATCCAATCGATCAGATGAACAAACCACATTACCACTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCATTTACCGTTCCATCA</pcr_primer_p1>
		<pcr_primer_p2>CAGGTTTACTTTGTTTTCGATTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ACTCATTTACCGTTCCATCACTAATGGAAGCTCTTCCAATCCTTTCAATGTGAATTCAATTATCTCAGTTCTTGAGAAAGATATGAATTTTGCCAACTGAAAAATTATTCACCACAATATCATCGGCATTTTTTCAGTTATGAAATTTTTGATATCTTTCACAGGAATTATGAAGCTTGAAATTGACGGTTTAGATAAGTTTCTATCATAAGGAATACAATAATCGAAAACAAAGTAAACCTG</canonical_amplicon>
		<polymorphic_amplicon>ACTCATTTACCGTTCCATCACTAATGGAAGCTCTTCCAATCCTTTCAATGTGAATTCAATTATCTCAGTTCYTGAGAAAGATATGAATTTTGCCAACTGAAAAATTATTCACCACAATATCATCGGCATTTTTTCAGTTATGAAATTTTTGATATCTTTCACAGGAATTATGAAGCTTGAAATTGACGGTTTAGATAAGTTTCTATCATAAGGAATACAATAATCGAAAACAAAGTAAACCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24851</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>574876</contig_pos>
        <strand>+</strand>
        <context>GTCATGTTTT[C/G]CCACAGTCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTTATGCAAAAGAACACACATTCCCACAGTGAGTACGCTGGTCATGTTTT</left_flank>
        <right_flank>CCACAGTCCTCGGATATTGTTATTTTTCCACATTATCAGAGTTGCTGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGATTTCAGTTAATTCTTGAAATTTTTCGAATTTTGGTATCCAAAAACCCTCCAACTAAAGTTTGTTTTCTTTAATAGAAGTCAATTCTAAGATGGCTGTTGAAAAAAAGAATCCCGTTTGCGTTCATTAGAGAAAATGCGGTAATTGATACCAGAAGTTTTGAGTTGCTTGGATTCCAAATCAAATGTCTTCGAAAGTTGGAGAATTTAGGTGAACCTGGGAAAGCTCAAAGCTTGTTAAAGATGGGCTCTAGATGTTTTGATATTTTTTAAAAAGCTCTATCCATCGGCTGCACATGTTCATAGAGACGTGGTCCATCAAAACTCTGAGACTAATTGAATTCTTGATCTTACAATTTGCATGAATCATATCCCAAAAAACTTCCGTTTGTTCTCTCTATGTGCCCCACACCCACACCCTTTGAAACAAGAAAAAGTGGTTTTAATCTTATGCAAAAGAACACACATTCCCACAGTGAGTACGCTGGTCATGTTTTGCCACAGTCCTCGGATATTGTTATTTTTCCACATTATCAGAGTTGCTGAAGTTTTGAACTTTTCTTTATCGTTCGCTCCAACGCCTCTGATTGGCTCCAAAAGCCGTACAAGTCTGAAAGAGGCGGGGTCAACGATGGTTTGCATATAAGGCGAATGCGCTCTTGAATTTGATCTCAGTTTCGTTATCTCCTTTTCTAACTTCACTGGAAATACCTTTTCATCTTTCAGGTGTCTATGATCCTCAACGATTGGGGAAACTCCCTCATGGGGGTGTATAAGGCAATCAATTGGGAACACATGGTAGTCCCATGTTATCTGCAAACTGTCATATTGATATATTTTCTTGGAGCCAACGTTTTCATGACCTACTATGATTACCCAAACTATACCAGTCTCCAACCGGGTACCACACATTTAGCCAGGTGCAATCTAAACATGCTAACGATCACCAGCACTTTCGTAACGGCTCAAGCTTTTGCCCAAGAGGTAGGTGGTTACTA</canonical>
            <polymorphic>GGTGATTTCAGTTAATTCTTGAAATTTTTCGAATTTTGGTATCCAAAAACCCTCCAACTAAAGTTTGTTTTCTTTAATAGAAGTCAATTCTAAGATGGCTGTTGAAAAAAAGAATCCCGTTTGCGTTCATTAGAGAAAATGCGGTAATTGATACCAGAAGTTTTGAGTTGCTTGGATTCCAAATCAAATGTCTTCGAAAGTTGGAGAATTTAGGTGAACCTGGGAAAGCTCAAAGCTTGTTAAAGATGGGCTCTAGATGTTTTGATATTTTTTAAAAAGCTCTATCCATCGGCTGCACATGTTCATAGAGACGTGGTCCATCAAAACTCTGAGACTAATTGAATTCTTGATCTTACAATTTGCATGAATCATATCCCAAAAAACTTCCGTTTGTTCTCTCTATGTGCCCCACACCCACACCCTTTGAAACAAGAAAAAGTGGTTTTAATCTTATGCAAAAGAACACACATTCCCACAGTGAGTACGCTGGTCATGTTTTSCCACAGTCCTCGGATATTGTTATTTTTCCACATTATCAGAGTTGCTGAAGTTTTGAACTTTTCTTTATCGTTCGCTCCAACGCCTCTGATTGGCTCCAAAAGCCGTACAAGTCTGAAAGAGGCGGGGTCAACGATGGTTTGCATATAAGGCGAATGCGCTCTTGAATTTGATCTCAGTTTCGTTATCTCCTTTTCTAACTTCACTGGAAATACCTTTTCATCTTTCAGGTGTCTATGATCCTCAACGATTGGGGAAACTCCCTCATGGGGGTGTATAAGGCAATCAATTGGGAACACATGGTAGTCCCATGTTATCTGCAAACTGTCATATTGATATATTTTCTTGGAGCCAACGTTTTCATGACCTACTATGATTACCCAAACTATACCAGTCTCCAACCGGGTACCACACATTTAGCCAGGTGCAATCTAAACATGCTAACGATCACCAGCACTTTCGTAACGGCTCAAGCTTTTGCCCAAGAGGTAGGTGGTTACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAAGTGGTTTTAATCTTATGC</pcr_primer_p1>
		<pcr_primer_p2>GAAACTGAGATCAAATTCAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAAAAGTGGTTTTAATCTTATGCAAAAGAACACACATTCCCACAGTGAGTACGCTGGTCATGTTTTGCCACAGTCCTCGGATATTGTTATTTTTCCACATTATCAGAGTTGCTGAAGTTTTGAACTTTTCTTTATCGTTCGCTCCAACGCCTCTGATTGGCTCCAAAAGCCGTACAAGTCTGAAAGAGGCGGGGTCAACGATGGTTTGCATATAAGGCGAATGCGCTCTTGAATTTGATCTCAGTTTC</canonical_amplicon>
		<polymorphic_amplicon>GAAAAAGTGGTTTTAATCTTATGCAAAAGAACACACATTCCCACAGTGAGTACGCTGGTCATGTTTTSCCACAGTCCTCGGATATTGTTATTTTTCCACATTATCAGAGTTGCTGAAGTTTTGAACTTTTCTTTATCGTTCGCTCCAACGCCTCTGATTGGCTCCAAAAGCCGTACAAGTCTGAAAGAGGCGGGGTCAACGATGGTTTGCATATAAGGCGAATGCGCTCTTGAATTTGATCTCAGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24852</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>581308</contig_pos>
        <strand>+</strand>
        <context>GAACAATTAA[A/C]KTAGGTGCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGTGGACCAACGAGTGTCATCAAATGAAGTGGCAATCTGGAACAATTAA</left_flank>
        <right_flank>GTAGGTGCGAGAAGACCGAGGAGGGGTGGTGGGGATGTAGAGAACAAGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTAAATGAAAAGTATTTAACCTAGGTTTGTTTTACATCCTCGAAAGTTCTCAAAATGATTTAAACTTAACAGCCGAGCTCTAGACTCTTGAAAATTGTCAAAAAGGTAGAAAAACAATTGCAAAATATTTTTTTATTGATATAGAAATAGAAATCTATAGAAAAAAAAACGCACCCTGATGTAAATTCTGTTCCTCGCTCTTTCATAATTTGGGTGGTTTTTGGCATGAAATTCATCGAGCCTAGCTCAATGTCTTGGTCATCAGTCAAAATTAGGATCACATTGTGTTGACTGAAAATCAGAAATTATCAGGTTTCAAAAAAACTTGGAAACTTACGAATCAACAAAATTGATAACCGCATTCGTACTAAAAACGAACGTGGAGAACAGAAACACCACGCAACTATTCCAATTCATAAATGTGTACTAAAAGGGACAACAATAAAAATGTGGACCAACGAGTGTCATCAAATGAAGTGGCAATCTGGAACAATTAAAGTAGGTGCGAGAAGACCGAGGAGGGGTGGTGGGGATGTAGAGAACAAGTGAAGTGGTTTGAGGCGAGCCCAACGATGTGTGAGGACCCCACTATTACACACTCACCTCATTCCTTTCACTCATTTGCCCACCAATCAAAAGAGTAACACCAATCGCCTCGGACAGATACTTTTCGAATTGTCCGCACTGAGATTCTTGACATTTTTTAACCAGGTCGTTTTTATTATGGCCATTCTTATTACAGACAAAATATAAATCCACCAGGTAAATGTATTCAGCAATTCAGGATTTTCAAATCAACTGGGAAGAGAGGAATCAAGGGGAGAAGGAATGCGGACAATAAAAGTTATGACAATAAAAAATGGAATGAGAAATTGGAAATTATTAGGACGATGTTACAATTAACTTGTTTGGGTGTGTTTTGAAGTCAGAGAAAACGTTCTGGGAACCAGCAACAATACAGGTGGGATTCAAAACATACAAAAAGGCCATGGCGAAAT</canonical>
            <polymorphic>TCGTAAATGAAAAGTATTTAACCTAGGTTTGTTTTACATCCTCGAAAGTTCTCAAAATGATTTAAACTTAACAGCCGAGCTCTAGACTCTTGAAAATTGTCAAAAAGGTAGAAAAACAATTGCAAAATATTTTTTTATTGATATAGAAATAGAAATCTATAGAAAAAAAAACGCACCCTGATGTAAATTCTGTTCCTCGCTCTTTCATAATTTGGGTGGTTTTTGGCATGAAATTCATCGAGCCTAGCTCAATGTCTTGGTCATCAGTCAAAATTAGGATCACATTGTGTTGACTGAAAATCAGAAATTATCAGGTTTCAAAAAAACTTGGAAACTTACGAATCAACAAAATTGATAACCGCATTCGTACTAAAAACGAACGTGGAGAACAGAAACACCACGCAACTATTCCAATTCATAAATGTGTACTAAAAGGGACAACAATAAAAATGTGGACCAACGAGTGTCATCAAATGAAGTGGCAATCTGGAACAATTAAMGTAGGTGCGAGAAGACCGAGGAGGGGTGGTGGGGATGTAGAGAACAAGTGAAGTGGTTTGAGGCGAGCCCAACGATGTGTGAGGACCCCACTATTACACACTCACCTCATTCCTTTCACTCATTTGCCCACCAATCAAAAGAGTAACACCAATCGCCTCGGACAGATACTTTTCGAATTGTCCGCACTGAGATTCTTGACATTTTTTAACCAGGTCGTTTTTATTATGGCCATTCTTATTACAGACAAAATATAAATCCACCAGGTAAATGTATTCAGCAATTCAGGATTTTCAAATCAACTGGGAAGAGAGGAATCAAGGGGAGAAGGAATGCGGACAATAAAAGTTATGACAATAAAAAATGGAATGAGAAATTGGAAATTATTAGGACGATGTTACAATTAACTTGTTTGGGTGTGTTTTGAAGTCAGAGAAAACGTTCTGGGAACCAGCAACAATACAGGTGGGATTCAAAACATACAAAAAGGCCATGGCGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAAGGGACAACAATAAAAATG</pcr_primer_p1>
		<pcr_primer_p2>ACAATTCGAAAAGTATCTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAAAAGGGACAACAATAAAAATGTGGACCAACGAGTGTCATCAAATGAAGTGGCAATCTGGAACAATTAAAGTAGGTGCGAGAAGACCGAGGAGGGGTGGTGGGGATGTAGAGAACAAGTGAAGTGGTTTGAGGCGAGCCCAACGATGTGTGAGGACCCCACTATTACACACTCACCTCATTCCTTTCACTCATTTGCCCACCAATCAAAAGAGTAACACCAATCGCCTCGGACAGATACTTTTCGAATTGT</canonical_amplicon>
		<polymorphic_amplicon>TAAAAGGGACAACAATAAAAATGTGGACCAACGAGTGTCATCAAATGAAGTGGCAATCTGGAACAATTAAMGTAGGTGCGAGAAGACCGAGGAGGGGTGGTGGGGATGTAGAGAACAAGTGAAGTGGTTTGAGGCGAGCCCAACGATGTGTGAGGACCCCACTATTACACACTCACCTCATTCCTTTCACTCATTTGCCCACCAATCAAAAGAGTAACACCAATCGCCTCGGACAGATACTTTTCGAATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24853</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>581309</contig_pos>
        <strand>+</strand>
        <context>AACAATTAAM[G/T]TAGGTGCGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTGGACCAACGAGTGTCATCAAATGAAGTGGCAATCTGGAACAATTAAA</left_flank>
        <right_flank>TAGGTGCGAGAAGACCGAGGAGGGGTGGTGGGGATGTAGAGAACAAGTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTAAATGAAAAGTATTTAACCTAGGTTTGTTTTACATCCTCGAAAGTTCTCAAAATGATTTAAACTTAACAGCCGAGCTCTAGACTCTTGAAAATTGTCAAAAAGGTAGAAAAACAATTGCAAAATATTTTTTTATTGATATAGAAATAGAAATCTATAGAAAAAAAAACGCACCCTGATGTAAATTCTGTTCCTCGCTCTTTCATAATTTGGGTGGTTTTTGGCATGAAATTCATCGAGCCTAGCTCAATGTCTTGGTCATCAGTCAAAATTAGGATCACATTGTGTTGACTGAAAATCAGAAATTATCAGGTTTCAAAAAAACTTGGAAACTTACGAATCAACAAAATTGATAACCGCATTCGTACTAAAAACGAACGTGGAGAACAGAAACACCACGCAACTATTCCAATTCATAAATGTGTACTAAAAGGGACAACAATAAAAATGTGGACCAACGAGTGTCATCAAATGAAGTGGCAATCTGGAACAATTAAAGTAGGTGCGAGAAGACCGAGGAGGGGTGGTGGGGATGTAGAGAACAAGTGAAGTGGTTTGAGGCGAGCCCAACGATGTGTGAGGACCCCACTATTACACACTCACCTCATTCCTTTCACTCATTTGCCCACCAATCAAAAGAGTAACACCAATCGCCTCGGACAGATACTTTTCGAATTGTCCGCACTGAGATTCTTGACATTTTTTAACCAGGTCGTTTTTATTATGGCCATTCTTATTACAGACAAAATATAAATCCACCAGGTAAATGTATTCAGCAATTCAGGATTTTCAAATCAACTGGGAAGAGAGGAATCAAGGGGAGAAGGAATGCGGACAATAAAAGTTATGACAATAAAAAATGGAATGAGAAATTGGAAATTATTAGGACGATGTTACAATTAACTTGTTTGGGTGTGTTTTGAAGTCAGAGAAAACGTTCTGGGAACCAGCAACAATACAGGTGGGATTCAAAACATACAAAAAGGCCATGGCGAAATT</canonical>
            <polymorphic>CGTAAATGAAAAGTATTTAACCTAGGTTTGTTTTACATCCTCGAAAGTTCTCAAAATGATTTAAACTTAACAGCCGAGCTCTAGACTCTTGAAAATTGTCAAAAAGGTAGAAAAACAATTGCAAAATATTTTTTTATTGATATAGAAATAGAAATCTATAGAAAAAAAAACGCACCCTGATGTAAATTCTGTTCCTCGCTCTTTCATAATTTGGGTGGTTTTTGGCATGAAATTCATCGAGCCTAGCTCAATGTCTTGGTCATCAGTCAAAATTAGGATCACATTGTGTTGACTGAAAATCAGAAATTATCAGGTTTCAAAAAAACTTGGAAACTTACGAATCAACAAAATTGATAACCGCATTCGTACTAAAAACGAACGTGGAGAACAGAAACACCACGCAACTATTCCAATTCATAAATGTGTACTAAAAGGGACAACAATAAAAATGTGGACCAACGAGTGTCATCAAATGAAGTGGCAATCTGGAACAATTAAAKTAGGTGCGAGAAGACCGAGGAGGGGTGGTGGGGATGTAGAGAACAAGTGAAGTGGTTTGAGGCGAGCCCAACGATGTGTGAGGACCCCACTATTACACACTCACCTCATTCCTTTCACTCATTTGCCCACCAATCAAAAGAGTAACACCAATCGCCTCGGACAGATACTTTTCGAATTGTCCGCACTGAGATTCTTGACATTTTTTAACCAGGTCGTTTTTATTATGGCCATTCTTATTACAGACAAAATATAAATCCACCAGGTAAATGTATTCAGCAATTCAGGATTTTCAAATCAACTGGGAAGAGAGGAATCAAGGGGAGAAGGAATGCGGACAATAAAAGTTATGACAATAAAAAATGGAATGAGAAATTGGAAATTATTAGGACGATGTTACAATTAACTTGTTTGGGTGTGTTTTGAAGTCAGAGAAAACGTTCTGGGAACCAGCAACAATACAGGTGGGATTCAAAACATACAAAAAGGCCATGGCGAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAAGGGACAACAATAAAAATG</pcr_primer_p1>
		<pcr_primer_p2>ACAATTCGAAAAGTATCTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAAAAGGGACAACAATAAAAATGTGGACCAACGAGTGTCATCAAATGAAGTGGCAATCTGGAACAATTAAAGTAGGTGCGAGAAGACCGAGGAGGGGTGGTGGGGATGTAGAGAACAAGTGAAGTGGTTTGAGGCGAGCCCAACGATGTGTGAGGACCCCACTATTACACACTCACCTCATTCCTTTCACTCATTTGCCCACCAATCAAAAGAGTAACACCAATCGCCTCGGACAGATACTTTTCGAATTGT</canonical_amplicon>
		<polymorphic_amplicon>TAAAAGGGACAACAATAAAAATGTGGACCAACGAGTGTCATCAAATGAAGTGGCAATCTGGAACAATTAAAKTAGGTGCGAGAAGACCGAGGAGGGGTGGTGGGGATGTAGAGAACAAGTGAAGTGGTTTGAGGCGAGCCCAACGATGTGTGAGGACCCCACTATTACACACTCACCTCATTCCTTTCACTCATTTGCCCACCAATCAAAAGAGTAACACCAATCGCCTCGGACAGATACTTTTCGAATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24854</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>594193</contig_pos>
        <strand>-</strand>
        <context>AGCGAGTGGG[A/C]GAGTCGGCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCTGGACTAACTTTAGAATACGTTTATCTATCGGTCCGTTAGCGAGTGGG</left_flank>
        <right_flank>GAGTCGGCAGCAGATGACGAAACACCGTTCTTACTAGAACCCTTCCTAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAAACGTCAATCTGCATGATTTTGAGAGTCATTTGAATGACTCATTCCGCACTCCTTTTCTTGAGACGACGTTAACACATGAAAAACAATCGATATACCAAAAGAATCTGCTCTCTCGGTTCAGAAAAATGATGGTTGTTGCAGCGGGTTTCGAAACAGAAACTACTGTAACATACCATACCTCTAACCTACAGAAAATGGGCAAGAACACCAAAGATAGTAGAAAAGGGAGTGGGTGAACTCGAAGGATTGTCTCTATCACATACAGCACGTATAGCCAGAATGAGAGATGAAACTTTTTAAACATTAAAATGTTTCTTTGAACTTTCAAATTCTGAAAGTTGAGCTTTGCAATCGGTGTATTTCAAACTCTGAATCCATGGACTGTCGAGCTGATCTTCATAGCCAATGTTTCTTTTCTCTGATAGTATGCACAATTCTTCGTGACCTGGACTAACTTTAGAATACGTTTATCTATCGGTCCGTTAGCGAGTGGGTGAGTCGGCAGCAGATGACGAAACACCGTTCTTACTAGAACCCTTCCTAAAGGGTACTTCGATTGACCAGGAAAAATGTTGCGCGGTCAGAGACACACGGATGCCCAGAAAAGACGACGCCTTCACTCTCGCTCTATATTGTGTTCCTATTAGCTAAGTGTGAATAACTAGAAGATAAAATTTTAGGGTGAGCCATAAGATGGAGGATTCTCATCGTCTAGAATAACGCTTTTATTTCCTTATCTAATCTTTTATCGCTCTTAAATGTCTATTACTGGGTTGCGCCCTAAAATAACTATCAATCCATATACCTCGCTCTCCTTCATTTTTGTTTCCTCTACTTCTGGGGACTTCTTCGCGACAACCTCACGAGTCGCTTCTCTCAAATTATTCTCCCCGCTTCGTTCTGGTACACACAGAAAATTTTCCTCTACTCCTATGCTCTCCCAAAAACAACCCCGCTGTCGTGTTGAACGGTTTTCTCTGTCCCTCCTCATGTAC</canonical>
            <polymorphic>AGAAAACGTCAATCTGCATGATTTTGAGAGTCATTTGAATGACTCATTCCGCACTCCTTTTCTTGAGACGACGTTAACACATGAAAAACAATCGATATACCAAAAGAATCTGCTCTCTCGGTTCAGAAAAATGATGGTTGTTGCAGCGGGTTTCGAAACAGAAACTACTGTAACATACCATACCTCTAACCTACAGAAAATGGGCAAGAACACCAAAGATAGTAGAAAAGGGAGTGGGTGAACTCGAAGGATTGTCTCTATCACATACAGCACGTATAGCCAGAATGAGAGATGAAACTTTTTAAACATTAAAATGTTTCTTTGAACTTTCAAATTCTGAAAGTTGAGCTTTGCAATCGGTGTATTTCAAACTCTGAATCCATGGACTGTCGAGCTGATCTTCATAGCCAATGTTTCTTTTCTCTGATAGTATGCACAATTCTTCGTGACCTGGACTAACTTTAGAATACGTTTATCTATCGGTCCGTTAGCGAGTGGGMGAGTCGGCAGCAGATGACGAAACACCGTTCTTACTAGAACCCTTCCTAAAGGGTACTTCGATTGACCAGGAAAAATGTTGCGCGGTCAGAGACACACGGATGCCCAGAAAAGACGACGCCTTCACTCTCGCTCTATATTGTGTTCCTATTAGCTAAGTGTGAATAACTAGAAGATAAAATTTTAGGGTGAGCCATAAGATGGAGGATTCTCATCGTCTAGAATAACGCTTTTATTTCCTTATCTAATCTTTTATCGCTCTTAAATGTCTATTACTGGGTTGCGCCCTAAAATAACTATCAATCCATATACCTCGCTCTCCTTCATTTTTGTTTCCTCTACTTCTGGGGACTTCTTCGCGACAACCTCACGAGTCGCTTCTCTCAAATTATTCTCCCCGCTTCGTTCTGGTACACACAGAAAATTTTCCTCTACTCCTATGCTCTCCCAAAAACAACCCCGCTGTCGTGTTGAACGGTTTTCTCTGTCCCTCCTCATGTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>179 133 90 74 70 53 53 49 45 32 28 28 26 24 23 23 18 17 12 9 4 4 2 2 2</canonical_bands>
                <polymorphic_bands>179 133 90 74 70 53 53 49 45 32 28 28 27 26 24 23 18 17 12 9 4 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAATGTTTCTTTTCTCTGATAG</pcr_primer_p1>
		<pcr_primer_p2>AGCTAATAGGAACACAATATAGAGC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCAATGTTTCTTTTCTCTGATAGTATGCACAATTCTTCGTGACCTGGACTAACTTTAGAATACGTTTATCTATCGGTCCGTTAGCGAGTGGGTGAGTCGGCAGCAGATGACGAAACACCGTTCTTACTAGAACCCTTCCTAAAGGGTACTTCGATTGACCAGGAAAAATGTTGCGCGGTCAGAGACACACGGATGCCCAGAAAAGACGACGCCTTCACTCTCGCTCTATATTGTGTTCCTATTAGCT</canonical_amplicon>
		<polymorphic_amplicon>CCAATGTTTCTTTTCTCTGATAGTATGCACAATTCTTCGTGACCTGGACTAACTTTAGAATACGTTTATCTATCGGTCCGTTAGCGAGTGGGMGAGTCGGCAGCAGATGACGAAACACCGTTCTTACTAGAACCCTTCCTAAAGGGTACTTCGATTGACCAGGAAAAATGTTGCGCGGTCAGAGACACACGGATGCCCAGAAAAGACGACGCCTTCACTCTCGCTCTATATTGTGTTCCTATTAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24855</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>594322</contig_pos>
        <strand>-</strand>
        <context>CCTTCACTCT[A/G]GCTCTATATT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCGCGGTCAGAGACACACGGATGCCCAGAAAAGACGACGCCTTCACTCT</left_flank>
        <right_flank>GCTCTATATTGTGTTCCTATTAGCTAAGTGTGAATAACTAGAAGATAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGATGGTTGTTGCAGCGGGTTTCGAAACAGAAACTACTGTAACATACCATACCTCTAACCTACAGAAAATGGGCAAGAACACCAAAGATAGTAGAAAAGGGAGTGGGTGAACTCGAAGGATTGTCTCTATCACATACAGCACGTATAGCCAGAATGAGAGATGAAACTTTTTAAACATTAAAATGTTTCTTTGAACTTTCAAATTCTGAAAGTTGAGCTTTGCAATCGGTGTATTTCAAACTCTGAATCCATGGACTGTCGAGCTGATCTTCATAGCCAATGTTTCTTTTCTCTGATAGTATGCACAATTCTTCGTGACCTGGACTAACTTTAGAATACGTTTATCTATCGGTCCGTTAGCGAGTGGGTGAGTCGGCAGCAGATGACGAAACACCGTTCTTACTAGAACCCTTCCTAAAGGGTACTTCGATTGACCAGGAAAAATGTTGCGCGGTCAGAGACACACGGATGCCCAGAAAAGACGACGCCTTCACTCTCGCTCTATATTGTGTTCCTATTAGCTAAGTGTGAATAACTAGAAGATAAAATTTTAGGGTGAGCCATAAGATGGAGGATTCTCATCGTCTAGAATAACGCTTTTATTTCCTTATCTAATCTTTTATCGCTCTTAAATGTCTATTACTGGGTTGCGCCCTAAAATAACTATCAATCCATATACCTCGCTCTCCTTCATTTTTGTTTCCTCTACTTCTGGGGACTTCTTCGCGACAACCTCACGAGTCGCTTCTCTCAAATTATTCTCCCCGCTTCGTTCTGGTACACACAGAAAATTTTCCTCTACTCCTATGCTCTCCCAAAAACAACCCCGCTGTCGTGTTGAACGGTTTTCTCTGTCCCTCCTCATGTACATCACAATTTTTCTTATCTCTCCGTAAAAGTACAACTGGGCCGTTGCATCGCGTCCCACATTTGGGCGATTCCTATTTTATTTTTCTCCTTATTGATTGATCATTCATATTTTGAATACGAAAATCATA</canonical>
            <polymorphic>AATGATGGTTGTTGCAGCGGGTTTCGAAACAGAAACTACTGTAACATACCATACCTCTAACCTACAGAAAATGGGCAAGAACACCAAAGATAGTAGAAAAGGGAGTGGGTGAACTCGAAGGATTGTCTCTATCACATACAGCACGTATAGCCAGAATGAGAGATGAAACTTTTTAAACATTAAAATGTTTCTTTGAACTTTCAAATTCTGAAAGTTGAGCTTTGCAATCGGTGTATTTCAAACTCTGAATCCATGGACTGTCGAGCTGATCTTCATAGCCAATGTTTCTTTTCTCTGATAGTATGCACAATTCTTCGTGACCTGGACTAACTTTAGAATACGTTTATCTATCGGTCCGTTAGCGAGTGGGTGAGTCGGCAGCAGATGACGAAACACCGTTCTTACTAGAACCCTTCCTAAAGGGTACTTCGATTGACCAGGAAAAATGTTGCGCGGTCAGAGACACACGGATGCCCAGAAAAGACGACGCCTTCACTCTRGCTCTATATTGTGTTCCTATTAGCTAAGTGTGAATAACTAGAAGATAAAATTTTAGGGTGAGCCATAAGATGGAGGATTCTCATCGTCTAGAATAACGCTTTTATTTCCTTATCTAATCTTTTATCGCTCTTAAATGTCTATTACTGGGTTGCGCCCTAAAATAACTATCAATCCATATACCTCGCTCTCCTTCATTTTTGTTTCCTCTACTTCTGGGGACTTCTTCGCGACAACCTCACGAGTCGCTTCTCTCAAATTATTCTCCCCGCTTCGTTCTGGTACACACAGAAAATTTTCCTCTACTCCTATGCTCTCCCAAAAACAACCCCGCTGTCGTGTTGAACGGTTTTCTCTGTCCCTCCTCATGTACATCACAATTTTTCTTATCTCTCCGTAAAAGTACAACTGGGCCGTTGCATCGCGTCCCACATTTGGGCGATTCCTATTTTATTTTTCTCCTTATTGATTGATCATTCATATTTTGAATACGAAAATCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTCTTACTAGAACCCTTCCTA</pcr_primer_p1>
		<pcr_primer_p2>AGACATTTAAGAGCGATAAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CGTTCTTACTAGAACCCTTCCTAAAGGGTACTTCGATTGACCAGGAAAAATGTTGCGCGGTCAGAGACACACGGATGCCCAGAAAAGACGACGCCTTCACTCTCGCTCTATATTGTGTTCCTATTAGCTAAGTGTGAATAACTAGAAGATAAAATTTTAGGGTGAGCCATAAGATGGAGGATTCTCATCGTCTAGAATAACGCTTTTATTTCCTTATCTAATCTTTTATCGCTCTTAAATGTCT</canonical_amplicon>
		<polymorphic_amplicon>CGTTCTTACTAGAACCCTTCCTAAAGGGTACTTCGATTGACCAGGAAAAATGTTGCGCGGTCAGAGACACACGGATGCCCAGAAAAGACGACGCCTTCACTCTRGCTCTATATTGTGTTCCTATTAGCTAAGTGTGAATAACTAGAAGATAAAATTTTAGGGTGAGCCATAAGATGGAGGATTCTCATCGTCTAGAATAACGCTTTTATTTCCTTATCTAATCTTTTATCGCTCTTAAATGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24856</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>594532</contig_pos>
        <strand>-</strand>
        <context>TGTTTCCTCT[C/T]CTTCTGGGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATAACTATCAATCCATATACCTCGCTCTCCTTCATTTTTGTTTCCTCT</left_flank>
        <right_flank>CTTCTGGGGACTTCTTCGCGACAACCTCACGAGTCGCTTCTCTCAAATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTTGAGCTTTGCAATCGGTGTATTTCAAACTCTGAATCCATGGACTGTCGAGCTGATCTTCATAGCCAATGTTTCTTTTCTCTGATAGTATGCACAATTCTTCGTGACCTGGACTAACTTTAGAATACGTTTATCTATCGGTCCGTTAGCGAGTGGGTGAGTCGGCAGCAGATGACGAAACACCGTTCTTACTAGAACCCTTCCTAAAGGGTACTTCGATTGACCAGGAAAAATGTTGCGCGGTCAGAGACACACGGATGCCCAGAAAAGACGACGCCTTCACTCTCGCTCTATATTGTGTTCCTATTAGCTAAGTGTGAATAACTAGAAGATAAAATTTTAGGGTGAGCCATAAGATGGAGGATTCTCATCGTCTAGAATAACGCTTTTATTTCCTTATCTAATCTTTTATCGCTCTTAAATGTCTATTACTGGGTTGCGCCCTAAAATAACTATCAATCCATATACCTCGCTCTCCTTCATTTTTGTTTCCTCTACTTCTGGGGACTTCTTCGCGACAACCTCACGAGTCGCTTCTCTCAAATTATTCTCCCCGCTTCGTTCTGGTACACACAGAAAATTTTCCTCTACTCCTATGCTCTCCCAAAAACAACCCCGCTGTCGTGTTGAACGGTTTTCTCTGTCCCTCCTCATGTACATCACAATTTTTCTTATCTCTCCGTAAAAGTACAACTGGGCCGTTGCATCGCGTCCCACATTTGGGCGATTCCTATTTTATTTTTCTCCTTATTGATTGATCATTCATATTTTGAATACGAAAATCATAGTTGTAATTGAGAACCCTAGCAATTGAGAAGATTAGTTTAAGGCTTTATTAGCGCATTCTGGTTCTGGGCCATTTTCATTTAGCGGGTGGTCCCAGAATAATCTGAAATACGTTAATCGGTCCGTTCACGACTCGGTTAAAAACTTTACAATCACATAATTATTTGAACTTTTCTAGTTTTTCAGCTGTTTACCGAATTCTATACACCTA</canonical>
            <polymorphic>AAAGTTGAGCTTTGCAATCGGTGTATTTCAAACTCTGAATCCATGGACTGTCGAGCTGATCTTCATAGCCAATGTTTCTTTTCTCTGATAGTATGCACAATTCTTCGTGACCTGGACTAACTTTAGAATACGTTTATCTATCGGTCCGTTAGCGAGTGGGTGAGTCGGCAGCAGATGACGAAACACCGTTCTTACTAGAACCCTTCCTAAAGGGTACTTCGATTGACCAGGAAAAATGTTGCGCGGTCAGAGACACACGGATGCCCAGAAAAGACGACGCCTTCACTCTCGCTCTATATTGTGTTCCTATTAGCTAAGTGTGAATAACTAGAAGATAAAATTTTAGGGTGAGCCATAAGATGGAGGATTCTCATCGTCTAGAATAACGCTTTTATTTCCTTATCTAATCTTTTATCGCTCTTAAATGTCTATTACTGGGTTGCGCCCTAAAATAACTATCAATCCATATACCTCGCTCTCCTTCATTTTTGTTTCCTCTYCTTCTGGGGACTTCTTCGCGACAACCTCACGAGTCGCTTCTCTCAAATTATTCTCCCCGCTTCGTTCTGGTACACACAGAAAATTTTCCTCTACTCCTATGCTCTCCCAAAAACAACCCCGCTGTCGTGTTGAACGGTTTTCTCTGTCCCTCCTCATGTACATCACAATTTTTCTTATCTCTCCGTAAAAGTACAACTGGGCCGTTGCATCGCGTCCCACATTTGGGCGATTCCTATTTTATTTTTCTCCTTATTGATTGATCATTCATATTTTGAATACGAAAATCATAGTTGTAATTGAGAACCCTAGCAATTGAGAAGATTAGTTTAAGGCTTTATTAGCGCATTCTGGTTCTGGGCCATTTTCATTTAGCGGGTGGTCCCAGAATAATCTGAAATACGTTAATCGGTCCGTTCACGACTCGGTTAAAAACTTTACAATCACATAATTATTTGAACTTTTCTAGTTTTTCAGCTGTTTACCGAATTCTATACACCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCCCTAAAATAACTATCAATC</pcr_primer_p1>
		<pcr_primer_p2>ACTTTTACGGAGAGATAAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGCCCTAAAATAACTATCAATCCATATACCTCGCTCTCCTTCATTTTTGTTTCCTCTACTTCTGGGGACTTCTTCGCGACAACCTCACGAGTCGCTTCTCTCAAATTATTCTCCCCGCTTCGTTCTGGTACACACAGAAAATTTTCCTCTACTCCTATGCTCTCCCAAAAACAACCCCGCTGTCGTGTTGAACGGTTTTCTCTGTCCCTCCTCATGTACATCACAATTTTTCTTATCTCTCCGTAAAAGT</canonical_amplicon>
		<polymorphic_amplicon>CGCCCTAAAATAACTATCAATCCATATACCTCGCTCTCCTTCATTTTTGTTTCCTCTYCTTCTGGGGACTTCTTCGCGACAACCTCACGAGTCGCTTCTCTCAAATTATTCTCCCCGCTTCGTTCTGGTACACACAGAAAATTTTCCTCTACTCCTATGCTCTCCCAAAAACAACCCCGCTGTCGTGTTGAACGGTTTTCTCTGTCCCTCCTCATGTACATCACAATTTTTCTTATCTCTCCGTAAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24857</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>594576</contig_pos>
        <strand>-</strand>
        <context>TCGCTTCTCT[A/G]AAATTATTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCTCTACTTCTGGGGACTTCTTCGCGACAACCTCACGAGTCGCTTCTCT</left_flank>
        <right_flank>AAATTATTCTCCCCGCTTCGTTCTGGTACACACAGAAAATTTTCCTCTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGACTGTCGAGCTGATCTTCATAGCCAATGTTTCTTTTCTCTGATAGTATGCACAATTCTTCGTGACCTGGACTAACTTTAGAATACGTTTATCTATCGGTCCGTTAGCGAGTGGGTGAGTCGGCAGCAGATGACGAAACACCGTTCTTACTAGAACCCTTCCTAAAGGGTACTTCGATTGACCAGGAAAAATGTTGCGCGGTCAGAGACACACGGATGCCCAGAAAAGACGACGCCTTCACTCTCGCTCTATATTGTGTTCCTATTAGCTAAGTGTGAATAACTAGAAGATAAAATTTTAGGGTGAGCCATAAGATGGAGGATTCTCATCGTCTAGAATAACGCTTTTATTTCCTTATCTAATCTTTTATCGCTCTTAAATGTCTATTACTGGGTTGCGCCCTAAAATAACTATCAATCCATATACCTCGCTCTCCTTCATTTTTGTTTCCTCTACTTCTGGGGACTTCTTCGCGACAACCTCACGAGTCGCTTCTCTCAAATTATTCTCCCCGCTTCGTTCTGGTACACACAGAAAATTTTCCTCTACTCCTATGCTCTCCCAAAAACAACCCCGCTGTCGTGTTGAACGGTTTTCTCTGTCCCTCCTCATGTACATCACAATTTTTCTTATCTCTCCGTAAAAGTACAACTGGGCCGTTGCATCGCGTCCCACATTTGGGCGATTCCTATTTTATTTTTCTCCTTATTGATTGATCATTCATATTTTGAATACGAAAATCATAGTTGTAATTGAGAACCCTAGCAATTGAGAAGATTAGTTTAAGGCTTTATTAGCGCATTCTGGTTCTGGGCCATTTTCATTTAGCGGGTGGTCCCAGAATAATCTGAAATACGTTAATCGGTCCGTTCACGACTCGGTTAAAAACTTTACAATCACATAATTATTTGAACTTTTCTAGTTTTTCAGCTGTTTACCGAATTCTATACACCTATTTTTTACACCTATTTTTTACGTTTTCAGTACGAAAACGGACCA</canonical>
            <polymorphic>GGACTGTCGAGCTGATCTTCATAGCCAATGTTTCTTTTCTCTGATAGTATGCACAATTCTTCGTGACCTGGACTAACTTTAGAATACGTTTATCTATCGGTCCGTTAGCGAGTGGGTGAGTCGGCAGCAGATGACGAAACACCGTTCTTACTAGAACCCTTCCTAAAGGGTACTTCGATTGACCAGGAAAAATGTTGCGCGGTCAGAGACACACGGATGCCCAGAAAAGACGACGCCTTCACTCTCGCTCTATATTGTGTTCCTATTAGCTAAGTGTGAATAACTAGAAGATAAAATTTTAGGGTGAGCCATAAGATGGAGGATTCTCATCGTCTAGAATAACGCTTTTATTTCCTTATCTAATCTTTTATCGCTCTTAAATGTCTATTACTGGGTTGCGCCCTAAAATAACTATCAATCCATATACCTCGCTCTCCTTCATTTTTGTTTCCTCTACTTCTGGGGACTTCTTCGCGACAACCTCACGAGTCGCTTCTCTRAAATTATTCTCCCCGCTTCGTTCTGGTACACACAGAAAATTTTCCTCTACTCCTATGCTCTCCCAAAAACAACCCCGCTGTCGTGTTGAACGGTTTTCTCTGTCCCTCCTCATGTACATCACAATTTTTCTTATCTCTCCGTAAAAGTACAACTGGGCCGTTGCATCGCGTCCCACATTTGGGCGATTCCTATTTTATTTTTCTCCTTATTGATTGATCATTCATATTTTGAATACGAAAATCATAGTTGTAATTGAGAACCCTAGCAATTGAGAAGATTAGTTTAAGGCTTTATTAGCGCATTCTGGTTCTGGGCCATTTTCATTTAGCGGGTGGTCCCAGAATAATCTGAAATACGTTAATCGGTCCGTTCACGACTCGGTTAAAAACTTTACAATCACATAATTATTTGAACTTTTCTAGTTTTTCAGCTGTTTACCGAATTCTATACACCTATTTTTTACACCTATTTTTTACGTTTTCAGTACGAAAACGGACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCCCTAAAATAACTATCAATC</pcr_primer_p1>
		<pcr_primer_p2>ACTTTTACGGAGAGATAAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGCCCTAAAATAACTATCAATCCATATACCTCGCTCTCCTTCATTTTTGTTTCCTCTACTTCTGGGGACTTCTTCGCGACAACCTCACGAGTCGCTTCTCTCAAATTATTCTCCCCGCTTCGTTCTGGTACACACAGAAAATTTTCCTCTACTCCTATGCTCTCCCAAAAACAACCCCGCTGTCGTGTTGAACGGTTTTCTCTGTCCCTCCTCATGTACATCACAATTTTTCTTATCTCTCCGTAAAAGT</canonical_amplicon>
		<polymorphic_amplicon>CGCCCTAAAATAACTATCAATCCATATACCTCGCTCTCCTTCATTTTTGTTTCCTCTACTTCTGGGGACTTCTTCGCGACAACCTCACGAGTCGCTTCTCTRAAATTATTCTCCCCGCTTCGTTCTGGTACACACAGAAAATTTTCCTCTACTCCTATGCTCTCCCAAAAACAACCCCGCTGTCGTGTTGAACGGTTTTCTCTGTCCCTCCTCATGTACATCACAATTTTTCTTATCTCTCCGTAAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24858</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>646305</contig_pos>
        <strand>+</strand>
        <context>ATTTATGCGG[A/T]TTGCACCCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTAATTATCGTATCGGCACCCTTTCGGTCAGCTCGTTTAGATTTATGCGG</left_flank>
        <right_flank>TTGCACCCATTTCTTAGAATTGTGAATCACAAAAGACTTTTCGCCTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCGGCGGACGTCTTCCATAGCTTCACTTCCTAATTGCAATGTGTTGCATTGCGCGCGATAAAAATCTTGATTAGAGGAGCTCATCTGGAGAGGGAGCACGAAACTTGGAATTGAGAGCAATCCTATATTTTCCATTGCAGGGCTCATCAAGAATCTGGAAGTGGCGCCTGGTGTCCAAAGAATCAAATCAACTCCCTTAGTAAGGAATGGCTTCAAATCTCCTTCTCCGTTGATACCGGTACCTTCAAAAAATCGTAAAGAACTATTAAATGTTGAAATTTTTGCAGTCATTACTTCTGTGGAGACTCAGGGACGTTATGACGACGGTCGAGGACAGGAGTACGCTACCGCATTCAAAATTCAGTATTGGCGACCTTCATTAAATGCCTGGGCATCCTATAAAGACGATTTCGAGCTAGAGGTTCGTCCTTTTCATTCAAAATGTCCGCTAATTATCGTATCGGCACCCTTTCGGTCAGCTCGTTTAGATTTATGCGGATTGCACCCATTTCTTAGAATTGTGAATCACAAAAGACTTTTCGCCTTTTTGTCGAACAATAGGGGAATATGACTTTTCTGGTCGTAATACTGTCGCTATACGAGCAACCGTGTTTGGGTGTGAATCAGCAAGGAACACATTTGAATACAGAGAAACCCGTTATCCGAGATTTATTACAAGGTCTTTTCTCAATCCGATTAGATATCAAGCCATTGAAATTCAAATTTCCGCTATATACAAATGCCATCATCATATTCACATTTCCCTTTAGTTTTTTGTTGTGTTTGATGGGAAAAGTGTATGGGACATCAATTTTTTGTTGTGTTTAGTGGATATCAAGAACAGAGGGGTCACGATAGACACGCTATACATTTTTAATGCCCTTTTCTTTCTGCAAAAGTAGCTCTCCTTGTACACCAGTACCACCACTCAGGGGTTCGAAATTGGTAGTTGGGGTAAATTAGTTGAAATTTGGACTGACAACAACAGGCAGCAGGCAC</canonical>
            <polymorphic>AGCGGCGGACGTCTTCCATAGCTTCACTTCCTAATTGCAATGTGTTGCATTGCGCGCGATAAAAATCTTGATTAGAGGAGCTCATCTGGAGAGGGAGCACGAAACTTGGAATTGAGAGCAATCCTATATTTTCCATTGCAGGGCTCATCAAGAATCTGGAAGTGGCGCCTGGTGTCCAAAGAATCAAATCAACTCCCTTAGTAAGGAATGGCTTCAAATCTCCTTCTCCGTTGATACCGGTACCTTCAAAAAATCGTAAAGAACTATTAAATGTTGAAATTTTTGCAGTCATTACTTCTGTGGAGACTCAGGGACGTTATGACGACGGTCGAGGACAGGAGTACGCTACCGCATTCAAAATTCAGTATTGGCGACCTTCATTAAATGCCTGGGCATCCTATAAAGACGATTTCGAGCTAGAGGTTCGTCCTTTTCATTCAAAATGTCCGCTAATTATCGTATCGGCACCCTTTCGGTCAGCTCGTTTAGATTTATGCGGWTTGCACCCATTTCTTAGAATTGTGAATCACAAAAGACTTTTCGCCTTTTTGTCGAACAATAGGGGAATATGACTTTTCTGGTCGTAATACTGTCGCTATACGAGCAACCGTGTTTGGGTGTGAATCAGCAAGGAACACATTTGAATACAGAGAAACCCGTTATCCGAGATTTATTACAAGGTCTTTTCTCAATCCGATTAGATATCAAGCCATTGAAATTCAAATTTCCGCTATATACAAATGCCATCATCATATTCACATTTCCCTTTAGTTTTTTGTTGTGTTTGATGGGAAAAGTGTATGGGACATCAATTTTTTGTTGTGTTTAGTGGATATCAAGAACAGAGGGGTCACGATAGACACGCTATACATTTTTAATGCCCTTTTCTTTCTGCAAAAGTAGCTCTCCTTGTACACCAGTACCACCACTCAGGGGTTCGAAATTGGTAGTTGGGGTAAATTAGTTGAAATTTGGACTGACAACAACAGGCAGCAGGCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCAAAATGTCCGCTAAT</pcr_primer_p1>
		<pcr_primer_p2>CTTGTAATAAATCTCGGATAACG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CATTCAAAATGTCCGCTAATTATCGTATCGGCACCCTTTCGGTCAGCTCGTTTAGATTTATGCGGATTGCACCCATTTCTTAGAATTGTGAATCACAAAAGACTTTTCGCCTTTTTGTCGAACAATAGGGGAATATGACTTTTCTGGTCGTAATACTGTCGCTATACGAGCAACCGTGTTTGGGTGTGAATCAGCAAGGAACACATTTGAATACAGAGAAACCCGTTATCCGAGATTTATTACAAG</canonical_amplicon>
		<polymorphic_amplicon>CATTCAAAATGTCCGCTAATTATCGTATCGGCACCCTTTCGGTCAGCTCGTTTAGATTTATGCGGWTTGCACCCATTTCTTAGAATTGTGAATCACAAAAGACTTTTCGCCTTTTTGTCGAACAATAGGGGAATATGACTTTTCTGGTCGTAATACTGTCGCTATACGAGCAACCGTGTTTGGGTGTGAATCAGCAAGGAACACATTTGAATACAGAGAAACCCGTTATCCGAGATTTATTACAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24859</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>646371</contig_pos>
        <strand></strand>
        <context>ACAATAGGGG[A/G]ATATGACTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAATTGTGAATCACAAAAGACTTTTCGCCTTTTTGTCGAACAATAGGGG</left_flank>
        <right_flank>ATATGACTTTTCTGGTCGTAATACTGTCGCTATACGAGCAACCGTGTTTG</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGATTAGAGGAGCTCATCTGGAGAGGGAGCACGAAACTTGGAATTGAGAGCAATCCTATATTTTCCATTGCAGGGCTCATCAAGAATCTGGAAGTGGCGCCTGGTGTCCAAAGAATCAAATCAACTCCCTTAGTAAGGAATGGCTTCAAATCTCCTTCTCCGTTGATACCGGTACCTTCAAAAAATCGTAAAGAACTATTAAATGTTGAAATTTTTGCAGTCATTACTTCTGTGGAGACTCAGGGACGTTATGACGACGGTCGAGGACAGGAGTACGCTACCGCATTCAAAATTCAGTATTGGCGACCTTCATTAAATGCCTGGGCATCCTATAAAGACGATTTCGAGCTAGAGGTTCGTCCTTTTCATTCAAAATGTCCGCTAATTATCGTATCGGCACCCTTTCGGTCAGCTCGTTTAGATTTATGCGGATTGCACCCATTTCTTAGAATTGTGAATCACAAAAGACTTTTCGCCTTTTTGTCGAACAATAGGGGAATATGACTTTTCTGGTCGTAATACTGTCGCTATACGAGCAACCGTGTTTGGGTGTGAATCAGCAAGGAACACATTTGAATACAGAGAAACCCGTTATCCGAGATTTATTACAAGGTCTTTTCTCAATCCGATTAGATATCAAGCCATTGAAATTCAAATTTCCGCTATATACAAATGCCATCATCATATTCACATTTCCCTTTAGTTTTTTGTTGTGTTTGATGGGAAAAGTGTATGGGACATCAATTTTTTGTTGTGTTTAGTGGATATCAAGAACAGAGGGGTCACGATAGACACGCTATACATTTTTAATGCCCTTTTCTTTCTGCAAAAGTAGCTCTCCTTGTACACCAGTACCACCACTCAGGGGTTCGAAATTGGTAGTTGGGGTAAATTAGTTGAAATTTGGACTGACAACAACAGGCAGCAGGCACACACTTGACACTTGTTTCTTGGCATTGTACTTGTAAGACGGATTGTCGTAAATGCGGTACCGATGG</canonical>
            <polymorphic>CTTGATTAGAGGAGCTCATCTGGAGAGGGAGCACGAAACTTGGAATTGAGAGCAATCCTATATTTTCCATTGCAGGGCTCATCAAGAATCTGGAAGTGGCGCCTGGTGTCCAAAGAATCAAATCAACTCCCTTAGTAAGGAATGGCTTCAAATCTCCTTCTCCGTTGATACCGGTACCTTCAAAAAATCGTAAAGAACTATTAAATGTTGAAATTTTTGCAGTCATTACTTCTGTGGAGACTCAGGGACGTTATGACGACGGTCGAGGACAGGAGTACGCTACCGCATTCAAAATTCAGTATTGGCGACCTTCATTAAATGCCTGGGCATCCTATAAAGACGATTTCGAGCTAGAGGTTCGTCCTTTTCATTCAAAATGTCCGCTAATTATCGTATCGGCACCCTTTCGGTCAGCTCGTTTAGATTTATGCGGATTGCACCCATTTCTTAGAATTGTGAATCACAAAAGACTTTTCGCCTTTTTGTCGAACAATAGGGGRATATGACTTTTCTGGTCGTAATACTGTCGCTATACGAGCAACCGTGTTTGGGTGTGAATCAGCAAGGAACACATTTGAATACAGAGAAACCCGTTATCCGAGATTTATTACAAGGTCTTTTCTCAATCCGATTAGATATCAAGCCATTGAAATTCAAATTTCCGCTATATACAAATGCCATCATCATATTCACATTTCCCTTTAGTTTTTTGTTGTGTTTGATGGGAAAAGTGTATGGGACATCAATTTTTTGTTGTGTTTAGTGGATATCAAGAACAGAGGGGTCACGATAGACACGCTATACATTTTTAATGCCCTTTTCTTTCTGCAAAAGTAGCTCTCCTTGTACACCAGTACCACCACTCAGGGGTTCGAAATTGGTAGTTGGGGTAAATTAGTTGAAATTTGGACTGACAACAACAGGCAGCAGGCACACACTTGACACTTGTTTCTTGGCATTGTACTTGTAAGACGGATTGTCGTAAATGCGGTACCGATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCAAAATGTCCGCTAAT</pcr_primer_p1>
		<pcr_primer_p2>CTTGTAATAAATCTCGGATAACG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CATTCAAAATGTCCGCTAATTATCGTATCGGCACCCTTTCGGTCAGCTCGTTTAGATTTATGCGGATTGCACCCATTTCTTAGAATTGTGAATCACAAAAGACTTTTCGCCTTTTTGTCGAACAATAGGGGAATATGACTTTTCTGGTCGTAATACTGTCGCTATACGAGCAACCGTGTTTGGGTGTGAATCAGCAAGGAACACATTTGAATACAGAGAAACCCGTTATCCGAGATTTATTACAAG</canonical_amplicon>
		<polymorphic_amplicon>CATTCAAAATGTCCGCTAATTATCGTATCGGCACCCTTTCGGTCAGCTCGTTTAGATTTATGCGGATTGCACCCATTTCTTAGAATTGTGAATCACAAAAGACTTTTCGCCTTTTTGTCGAACAATAGGGGRATATGACTTTTCTGGTCGTAATACTGTCGCTATACGAGCAACCGTGTTTGGGTGTGAATCAGCAAGGAACACATTTGAATACAGAGAAACCCGTTATCCGAGATTTATTACAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24860</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>684276</contig_pos>
        <strand></strand>
        <context>TAACCTTTTT[T/C]TACGTAGTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATCCTCGGCGACCTTTTCTTGAAATAGAAAATTTCACAGTTAACCTTTTT</left_flank>
        <right_flank>TACGTAGTAAATACCTAGGTTAATTTTAGTATGTGTCCCTCCCATTCTAA</right_flank>
        <qual_score>33</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTATTGTTTTGTGAAACGTGTAATGTGTCCTTTAAGTTCGAAGATAATCCCAAAAAAAAAATGTTTCTTTGTGTCTTAAAACAAAAAAACGGGCCTAAATTGCTCTCACAAAACCACCACCAGACCATATTTGTTTCGTTTTTCCTAGTTTATTTTTTGTTTCTCTTTCCACCGACAGCATGCATTTCTAGGCCTTTTGCGTCGCTATGTCTTGGTTCCGTTTTCTTTACGCACACGTTTGTGCTTCCATTTTTTGTTGAATATTTCACTTGGTTCTGTTCTCAAAAAACTAACCGAGCCGTGGATAATGGGACACTTTTTTGTTTTGGTTTGACATGGAAATAGTCAATGGTGTTTGTGTAGATCAAATGAACAAAGTAACGGTTGAATATTCAACTATTCAAGGAAACCATAATTGTTTTGAATTCTGAGAACTTCGAATCCCAGAATCCTCGGCGACCTTTTCTTGAAATAGAAAATTTCACAGTTAACCTTTTTTTACGTAGTAAATACCTAGGTTAATTTTAGTATGTGTCCCTCCCATTCTAAGATTAGCAGTGTCGCAAAAAAGAAGCATCGCACGTCATCATCATCATCTTTTTTTTACATGCATTGCTATAATCTGAAAGTCATTTAGGTCTACAAAATGTCCAACAAAACAATCTTGCTCAATTAATGGCTCTGTCCTTTTTATTCCAAATTACACTCGTTTTCGATTTGAGTGTTCTTATAAGACGCTCATTTTTGAACAACGGTCAAAAAGCGATGAGTGAGGCCTTTATTTCTTTCAGATGAGAATTTTTCTTTTTTTTTCGTCGACGAAAAAAATTGTTGAAAAACTCCTTAACCAAGTTAAAAGTGTGAATTAAATCAACTGCTGGGAAAAAATTCGAAGGCGTTTTTTTTCTTATTTTTTTGAGATGATTCTTGAGGTCCATTTTCCTAGAAAGCCAAAAAAAGAAAAGAAATTCAATTCCAATTTTCTAGCAATTACCTATC</canonical>
            <polymorphic>TCTATTGTTTTGTGAAACGTGTAATGTGTCCTTTAAGTTCGAAGATAATCCCAAAAAAAAAATGTTTCTTTGTGTCTTAAAACAAAAAAACGGGCCTAAATTGCTCTCACAAAACCACCACCAGACCATATTTGTTTCGTTTTTCCTAGTTTATTTTTTGTTTCTCTTTCCACCGACAGCATGCATTTCTAGGCCTTTTGCGTCGCTATGTCTTGGTTCCGTTTTCTTTACGCACACGTTTGTGCTTCCATTTTTTGTTGAATATTTCACTTGGTTCTGTTCTCAAAAAACTAACCGAGCCGTGGATAATGGGACACTTTTTTGTTTTGGTTTGACATGGAAATAGTCAATGGTGTTTGTGTAGATCAAATGAACAAAGTAACGGTTGAATATTCAACTATTCAAGGAAACCATAATTGTTTTGAATTCTGAGAACTTCGAATCCCAGAATCCTCGGCGACCTTTTCTTGAAATAGAAAATTTCACAGTTAACCTTTTTYTACGTAGTAAATACCTAGGTTAATTTTAGTATGTGTCCCTCCCATTCTAAGATTAGCAGTGTCGCAAAAAAGAAGCATCGCACGTCATCATCATCATCTTTTTTTTACATGCATTGCTATAATCTGAAAGTCATTTAGGTCTACAAAATGTCCAACAAAACAATCTTGCTCAATTAATGGCTCTGTCCTTTTTATTCCAAATTACACTCGTTTTCGATTTGAGTGTTCTTATAAGACGCTCATTTTTGAACAACGGTCAAAAAGCGATGAGTGAGGCCTTTATTTCTTTCAGATGAGAATTTTTCTTTTTTTTTCGTCGACGAAAAAAATTGTTGAAAAACTCCTTAACCAAGTTAAAAGTGTGAATTAAATCAACTGCTGGGAAAAAATTCGAAGGCGTTTTTTTTCTTATTTTTTTGAGATGATTCTTGAGGTCCATTTTCCTAGAAAGCCAAAAAAAGAAAAGAAATTCAATTCCAATTTTCTAGCAATTACCTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATAATTGTTTTGAATTCTGAG</pcr_primer_p1>
		<pcr_primer_p2>GTTTTGTTGGACATTTTGTAGAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCATAATTGTTTTGAATTCTGAGAACTTCGAATCCCAGAATCCTCGGCGACCTTTTCTTGAAATAGAAAATTTCACAGTTAACCTTTTTTTACGTAGTAAATACCTAGGTTAATTTTAGTATGTGTCCCTCCCATTCTAAGATTAGCAGTGTCGCAAAAAAGAAGCATCGCACGTCATCATCATCATCTTTTTTTTACATGCATTGCTATAATCTGAAAGTCATTTAGGTCTACAAAATGTCCAACAAAAC</canonical_amplicon>
		<polymorphic_amplicon>CCATAATTGTTTTGAATTCTGAGAACTTCGAATCCCAGAATCCTCGGCGACCTTTTCTTGAAATAGAAAATTTCACAGTTAACCTTTTTYTACGTAGTAAATACCTAGGTTAATTTTAGTATGTGTCCCTCCCATTCTAAGATTAGCAGTGTCGCAAAAAAGAAGCATCGCACGTCATCATCATCATCTTTTTTTTACATGCATTGCTATAATCTGAAAGTCATTTAGGTCTACAAAATGTCCAACAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24861</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>715904</contig_pos>
        <strand>-</strand>
        <context>TTTTTCGGGG[A/T]TTRCGGAWTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGGCGGCACCTTTTTTGAATTTTTCTCATTTTCCACGGCGTTTTTCGGGG</left_flank>
        <right_flank>TTCCGGATTTCTTTTGAACTTTTTCGCAATAATATTAGGAAAGTAGATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGCTCTGGATTTCGTATTCGACTCAAATATTTGAAAATTTCGGATTGAGTTCTGGGAAAGCCCAAACTGCCTCGCTGATTATGTCGTTGCCACAAGCTGTGATAAGTGTTGCGTTGTTAGGGTGAGTTAAGATTTGAAAAATAACCGTAGCTTCTACCAATGGGAACTACCGCATTTCCTCCTAGAGTCACGTTTCCTTAAAGGGGGACTCACAAGACAATTCGTTAACACTCCTCCGAATCCATTCTAAGCAACATATATTCTGGTTTGTACGTTCGATGAGAGATCACAAACCTGAACCATGCCAACGATAGCTGATCCCAGCACTTTGTCATTTGCAAGGAAAAGTTCGGGTACAATCGCGTAAGCCGATTCTCCACTGATCGCGGCAACTGATAGATCAAAAGTGGNNNNNNNNNNNNAAGCGGGAATTGAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTCTCATTTTCCACGGCGTTTTTCGGGGATTCCGGATTTCTTTTGAACTTTTTCGCAATAATATTAGGAAAGTAGATAACTTTTAACACATTTCAATGCAATAAAATTTTTTGGTCGGAGTCCCCCTTCAAACAGTCTGAACTGCGACTAAACTTTTGAAAAATTTGAATGGCGACCTAAATTTCAATTTTAAGACAATTGATTTCGGTACCTGTCGATAATATCAAAAAATCGTAAACTGATAAACTGTTTGAAGTATCATAATGACCAATTTGTTAGTTAACAAGTTTTCTATTTCATGGACAGGTACCGAGATGAGTCATGTCAAAATTGACACGGTAGGGACACTACTCATACAGGTTTTACGGTAATGTTTGTAATTGACAACATTTTTCTTAAATTCCATTTTGCTAAGATGAGTCGTTCAAAAAATGCAAAAAGTGAAGAAAAAAGCGCTAAAATGTGAGCCGTGCCATTTCAAAAGATATTTTTCTATGTTGGAATTGTATAAAAAATCTGTATTACAAAG</canonical>
            <polymorphic>CAGCTCTGGATTTCGTATTCGACTCAAATATTTGAAAATTTCGGATTGAGTTCTGGGAAAGCCCAAACTGCCTCGCTGATTATGTCGTTGCCACAAGCTGTGATAAGTGTTGCGTTGTTAGGGTGAGTTAAGATTTGAAAAATAACCGTAGCTTCTACCAATGGGAACTACCGCATTTCCTCCTAGAGTCACGTTTCCTTAAAGGGGGACTCACAAGACAATTCGTTAACACTCCTCCGAATCCATTCTAAGCAACATATATTCTGGTTTGTACGTTCGATGAGAGATCACAAACCTGAACCATGCCAACGATAGCTGATCCCAGCACTTTGTCATTTGCAAGGAAAAGTTCGGGTACAATCGCGTAAGCCGATTCTCCACTGATCGCGGCAACTGATAGATCAAAAGTGGNNNNNNNNNNNNAAGCGGGAATTGAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTCTCATTTTCCACGGCGTTTTTCGGGGWTTCCGGATTTCTTTTGAACTTTTTCGCAATAATATTAGGAAAGTAGATAACTTTTAACACATTTCAATGCAATAAAATTTTTTGGTCGGAGTCCCCCTTCAAACAGTCTGAACTGCGACTAAACTTTTGAAAAATTTGAATGGCGACCTAAATTTCAATTTTAAGACAATTGATTTCGGTACCTGTCGATAATATCAAAAAATCGTAAACTGATAAACTGTTTGAAGTATCATAATGACCAATTTGTTAGTTAACAAGTTTTCTATTTCATGGACAGGTACCGAGATGAGTCATGTCAAAATTGACACGGTAGGGACACTACTCATACAGGTTTTACGGTAATGTTTGTAATTGACAACATTTTTCTTAAATTCCATTTTGCTAAGATGAGTCGTTCAAAAAATGCAAAAAGTGAAGAAAAAAGCGCTAAAATGTGAGCCGTGCCATTTCAAAAGATATTTTTCTATGTTGGAATTGTATAAAAAATCTGTATTACAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>199 165 133 127 111 101 90 31 22 21</canonical_bands>
                <polymorphic_bands>217 199 165 133 111 101 31 22 21</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 239 133 127</canonical_bands>
                <polymorphic_bands>628 239 133</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGAAAAGTTCGGGTACAAT</pcr_primer_p1>
		<pcr_primer_p2>TAGTCGCAGTTCAGACTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>280</pcr_amplicon_size>
		<canonical_amplicon>AGGAAAAGTTCGGGTACAATCGCGTAAGCCGATTCTCCACTGATCGCGGCAACTGATAGATCAAAAGTGGNNNNNNNNNNNNAAGCGGGAATTGAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTCTCATTTTCCACGGCGTTTTTCGGGGATTCCGGATTTCTTTTGAACTTTTTCGCAATAATATTAGGAAAGTAGATAACTTTTAACACATTTCAATGCAATAAAATTTTTTGGTCGGAGTCCCCCTTCAAACAGTCTGAACTGCGACTA</canonical_amplicon>
		<polymorphic_amplicon>AGGAAAAGTTCGGGTACAATCGCGTAAGCCGATTCTCCACTGATCGCGGCAACTGATAGATCAAAAGTGGNNNNNNNNNNNNAAGCGGGAATTGAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTCTCATTTTCCACGGCGTTTTTCGGGGWTTCCGGATTTCTTTTGAACTTTTTCGCAATAATATTAGGAAAGTAGATAACTTTTAACACATTTCAATGCAATAAAATTTTTTGGTCGGAGTCCCCCTTCAAACAGTCTGAACTGCGACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24862</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>715907</contig_pos>
        <strand>-</strand>
        <context>TTCGGGGWTT[A/G]CGGAWTTCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGCACCTTTTTTGAATTTTTCTCATTTTCCACGGCGTTTTTCGGGGATT</left_flank>
        <right_flank>CGGATTTCTTTTGAACTTTTTCGCAATAATATTAGGAAAGTAGATAACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTGGATTTCGTATTCGACTCAAATATTTGAAAATTTCGGATTGAGTTCTGGGAAAGCCCAAACTGCCTCGCTGATTATGTCGTTGCCACAAGCTGTGATAAGTGTTGCGTTGTTAGGGTGAGTTAAGATTTGAAAAATAACCGTAGCTTCTACCAATGGGAACTACCGCATTTCCTCCTAGAGTCACGTTTCCTTAAAGGGGGACTCACAAGACAATTCGTTAACACTCCTCCGAATCCATTCTAAGCAACATATATTCTGGTTTGTACGTTCGATGAGAGATCACAAACCTGAACCATGCCAACGATAGCTGATCCCAGCACTTTGTCATTTGCAAGGAAAAGTTCGGGTACAATCGCGTAAGCCGATTCTCCACTGATCGCGGCAACTGATAGATCAAAAGTGGNNNNNNNNNNNNAAGCGGGAATTGAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTCTCATTTTCCACGGCGTTTTTCGGGGATTCCGGATTTCTTTTGAACTTTTTCGCAATAATATTAGGAAAGTAGATAACTTTTAACACATTTCAATGCAATAAAATTTTTTGGTCGGAGTCCCCCTTCAAACAGTCTGAACTGCGACTAAACTTTTGAAAAATTTGAATGGCGACCTAAATTTCAATTTTAAGACAATTGATTTCGGTACCTGTCGATAATATCAAAAAATCGTAAACTGATAAACTGTTTGAAGTATCATAATGACCAATTTGTTAGTTAACAAGTTTTCTATTTCATGGACAGGTACCGAGATGAGTCATGTCAAAATTGACACGGTAGGGACACTACTCATACAGGTTTTACGGTAATGTTTGTAATTGACAACATTTTTCTTAAATTCCATTTTGCTAAGATGAGTCGTTCAAAAAATGCAAAAAGTGAAGAAAAAAGCGCTAAAATGTGAGCCGTGCCATTTCAAAAGATATTTTTCTATGTTGGAATTGTATAAAAAATCTGTATTACAAAGTTG</canonical>
            <polymorphic>CTCTGGATTTCGTATTCGACTCAAATATTTGAAAATTTCGGATTGAGTTCTGGGAAAGCCCAAACTGCCTCGCTGATTATGTCGTTGCCACAAGCTGTGATAAGTGTTGCGTTGTTAGGGTGAGTTAAGATTTGAAAAATAACCGTAGCTTCTACCAATGGGAACTACCGCATTTCCTCCTAGAGTCACGTTTCCTTAAAGGGGGACTCACAAGACAATTCGTTAACACTCCTCCGAATCCATTCTAAGCAACATATATTCTGGTTTGTACGTTCGATGAGAGATCACAAACCTGAACCATGCCAACGATAGCTGATCCCAGCACTTTGTCATTTGCAAGGAAAAGTTCGGGTACAATCGCGTAAGCCGATTCTCCACTGATCGCGGCAACTGATAGATCAAAAGTGGNNNNNNNNNNNNAAGCGGGAATTGAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTCTCATTTTCCACGGCGTTTTTCGGGGATTRCGGATTTCTTTTGAACTTTTTCGCAATAATATTAGGAAAGTAGATAACTTTTAACACATTTCAATGCAATAAAATTTTTTGGTCGGAGTCCCCCTTCAAACAGTCTGAACTGCGACTAAACTTTTGAAAAATTTGAATGGCGACCTAAATTTCAATTTTAAGACAATTGATTTCGGTACCTGTCGATAATATCAAAAAATCGTAAACTGATAAACTGTTTGAAGTATCATAATGACCAATTTGTTAGTTAACAAGTTTTCTATTTCATGGACAGGTACCGAGATGAGTCATGTCAAAATTGACACGGTAGGGACACTACTCATACAGGTTTTACGGTAATGTTTGTAATTGACAACATTTTTCTTAAATTCCATTTTGCTAAGATGAGTCGTTCAAAAAATGCAAAAAGTGAAGAAAAAAGCGCTAAAATGTGAGCCGTGCCATTTCAAAAGATATTTTTCTATGTTGGAATTGTATAAAAAATCTGTATTACAAAGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCCGGA</site>
                <isoschizomers>
                    <enzyme>AccIII</enzyme>
                    <enzyme>BseAI</enzyme>
                    <enzyme>BsiMI</enzyme>
                    <enzyme>Bsp13I</enzyme>
                    <enzyme>BspEI</enzyme>
                    <enzyme>BspMII</enzyme>
                    <enzyme>Kpn2I</enzyme>
                    <enzyme>MroI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>199 165 133 127 114 101 90 31 22 18</canonical_bands>
                <polymorphic_bands>217 199 165 133 114 101 31 22 18</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>500 497 3</canonical_bands>
                <polymorphic_bands>997 3</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>504 236 133 127</canonical_bands>
                <polymorphic_bands>631 236 133</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGAAAAGTTCGGGTACAAT</pcr_primer_p1>
		<pcr_primer_p2>TAGTCGCAGTTCAGACTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>280</pcr_amplicon_size>
		<canonical_amplicon>AGGAAAAGTTCGGGTACAATCGCGTAAGCCGATTCTCCACTGATCGCGGCAACTGATAGATCAAAAGTGGNNNNNNNNNNNNAAGCGGGAATTGAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTCTCATTTTCCACGGCGTTTTTCGGGGATTCCGGATTTCTTTTGAACTTTTTCGCAATAATATTAGGAAAGTAGATAACTTTTAACACATTTCAATGCAATAAAATTTTTTGGTCGGAGTCCCCCTTCAAACAGTCTGAACTGCGACTA</canonical_amplicon>
		<polymorphic_amplicon>AGGAAAAGTTCGGGTACAATCGCGTAAGCCGATTCTCCACTGATCGCGGCAACTGATAGATCAAAAGTGGNNNNNNNNNNNNAAGCGGGAATTGAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTCTCATTTTCCACGGCGTTTTTCGGGGATTRCGGATTTCTTTTGAACTTTTTCGCAATAATATTAGGAAAGTAGATAACTTTTAACACATTTCAATGCAATAAAATTTTTTGGTCGGAGTCCCCCTTCAAACAGTCTGAACTGCGACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24863</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>715912</contig_pos>
        <strand>-</strand>
        <context>GGWTTRCGGA[A/T]TTCTTTTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCTTTTTTGAATTTTTCTCATTTTCCACGGCGTTTTTCGGGGATTCCGGA</left_flank>
        <right_flank>TTCTTTTGAACTTTTTCGCAATAATATTAGGAAAGTAGATAACTTTTAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTCGTATTCGACTCAAATATTTGAAAATTTCGGATTGAGTTCTGGGAAAGCCCAAACTGCCTCGCTGATTATGTCGTTGCCACAAGCTGTGATAAGTGTTGCGTTGTTAGGGTGAGTTAAGATTTGAAAAATAACCGTAGCTTCTACCAATGGGAACTACCGCATTTCCTCCTAGAGTCACGTTTCCTTAAAGGGGGACTCACAAGACAATTCGTTAACACTCCTCCGAATCCATTCTAAGCAACATATATTCTGGTTTGTACGTTCGATGAGAGATCACAAACCTGAACCATGCCAACGATAGCTGATCCCAGCACTTTGTCATTTGCAAGGAAAAGTTCGGGTACAATCGCGTAAGCCGATTCTCCACTGATCGCGGCAACTGATAGATCAAAAGTGGNNNNNNNNNNNNAAGCGGGAATTGAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTCTCATTTTCCACGGCGTTTTTCGGGGATTCCGGATTTCTTTTGAACTTTTTCGCAATAATATTAGGAAAGTAGATAACTTTTAACACATTTCAATGCAATAAAATTTTTTGGTCGGAGTCCCCCTTCAAACAGTCTGAACTGCGACTAAACTTTTGAAAAATTTGAATGGCGACCTAAATTTCAATTTTAAGACAATTGATTTCGGTACCTGTCGATAATATCAAAAAATCGTAAACTGATAAACTGTTTGAAGTATCATAATGACCAATTTGTTAGTTAACAAGTTTTCTATTTCATGGACAGGTACCGAGATGAGTCATGTCAAAATTGACACGGTAGGGACACTACTCATACAGGTTTTACGGTAATGTTTGTAATTGACAACATTTTTCTTAAATTCCATTTTGCTAAGATGAGTCGTTCAAAAAATGCAAAAAGTGAAGAAAAAAGCGCTAAAATGTGAGCCGTGCCATTTCAAAAGATATTTTTCTATGTTGGAATTGTATAAAAAATCTGTATTACAAAGTTGAAGCT</canonical>
            <polymorphic>GATTTCGTATTCGACTCAAATATTTGAAAATTTCGGATTGAGTTCTGGGAAAGCCCAAACTGCCTCGCTGATTATGTCGTTGCCACAAGCTGTGATAAGTGTTGCGTTGTTAGGGTGAGTTAAGATTTGAAAAATAACCGTAGCTTCTACCAATGGGAACTACCGCATTTCCTCCTAGAGTCACGTTTCCTTAAAGGGGGACTCACAAGACAATTCGTTAACACTCCTCCGAATCCATTCTAAGCAACATATATTCTGGTTTGTACGTTCGATGAGAGATCACAAACCTGAACCATGCCAACGATAGCTGATCCCAGCACTTTGTCATTTGCAAGGAAAAGTTCGGGTACAATCGCGTAAGCCGATTCTCCACTGATCGCGGCAACTGATAGATCAAAAGTGGNNNNNNNNNNNNAAGCGGGAATTGAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTCTCATTTTCCACGGCGTTTTTCGGGGATTCCGGAWTTCTTTTGAACTTTTTCGCAATAATATTAGGAAAGTAGATAACTTTTAACACATTTCAATGCAATAAAATTTTTTGGTCGGAGTCCCCCTTCAAACAGTCTGAACTGCGACTAAACTTTTGAAAAATTTGAATGGCGACCTAAATTTCAATTTTAAGACAATTGATTTCGGTACCTGTCGATAATATCAAAAAATCGTAAACTGATAAACTGTTTGAAGTATCATAATGACCAATTTGTTAGTTAACAAGTTTTCTATTTCATGGACAGGTACCGAGATGAGTCATGTCAAAATTGACACGGTAGGGACACTACTCATACAGGTTTTACGGTAATGTTTGTAATTGACAACATTTTTCTTAAATTCCATTTTGCTAAGATGAGTCGTTCAAAAAATGCAAAAAGTGAAGAAAAAAGCGCTAAAATGTGAGCCGTGCCATTTCAAAAGATATTTTTCTATGTTGGAATTGTATAAAAAATCTGTATTACAAAGTTGAAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAAAAGTTCGGGTACAAT</pcr_primer_p1>
		<pcr_primer_p2>TAGTCGCAGTTCAGACTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>280</pcr_amplicon_size>
		<canonical_amplicon>AGGAAAAGTTCGGGTACAATCGCGTAAGCCGATTCTCCACTGATCGCGGCAACTGATAGATCAAAAGTGGNNNNNNNNNNNNAAGCGGGAATTGAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTCTCATTTTCCACGGCGTTTTTCGGGGATTCCGGATTTCTTTTGAACTTTTTCGCAATAATATTAGGAAAGTAGATAACTTTTAACACATTTCAATGCAATAAAATTTTTTGGTCGGAGTCCCCCTTCAAACAGTCTGAACTGCGACTA</canonical_amplicon>
		<polymorphic_amplicon>AGGAAAAGTTCGGGTACAATCGCGTAAGCCGATTCTCCACTGATCGCGGCAACTGATAGATCAAAAGTGGNNNNNNNNNNNNAAGCGGGAATTGAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTCTCATTTTCCACGGCGTTTTTCGGGGATTCCGGAWTTCTTTTGAACTTTTTCGCAATAATATTAGGAAAGTAGATAACTTTTAACACATTTCAATGCAATAAAATTTTTTGGTCGGAGTCCCCCTTCAAACAGTCTGAACTGCGACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24864</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>715928</contig_pos>
        <strand>-</strand>
        <context>TTGAACTTTT[A/G]CGCAATAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCATTTTCCACGGCGTTTTTCGGGGATTCCGGATTTCTTTTGAACTTTT</left_flank>
        <right_flank>CGCAATAATATTAGGAAAGTAGATAACTTTTAACACATTTCAATGCAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAATATTTGAAAATTTCGGATTGAGTTCTGGGAAAGCCCAAACTGCCTCGCTGATTATGTCGTTGCCACAAGCTGTGATAAGTGTTGCGTTGTTAGGGTGAGTTAAGATTTGAAAAATAACCGTAGCTTCTACCAATGGGAACTACCGCATTTCCTCCTAGAGTCACGTTTCCTTAAAGGGGGACTCACAAGACAATTCGTTAACACTCCTCCGAATCCATTCTAAGCAACATATATTCTGGTTTGTACGTTCGATGAGAGATCACAAACCTGAACCATGCCAACGATAGCTGATCCCAGCACTTTGTCATTTGCAAGGAAAAGTTCGGGTACAATCGCGTAAGCCGATTCTCCACTGATCGCGGCAACTGATAGATCAAAAGTGGNNNNNNNNNNNNAAGCGGGAATTGAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTCTCATTTTCCACGGCGTTTTTCGGGGATTCCGGATTTCTTTTGAACTTTTTCGCAATAATATTAGGAAAGTAGATAACTTTTAACACATTTCAATGCAATAAAATTTTTTGGTCGGAGTCCCCCTTCAAACAGTCTGAACTGCGACTAAACTTTTGAAAAATTTGAATGGCGACCTAAATTTCAATTTTAAGACAATTGATTTCGGTACCTGTCGATAATATCAAAAAATCGTAAACTGATAAACTGTTTGAAGTATCATAATGACCAATTTGTTAGTTAACAAGTTTTCTATTTCATGGACAGGTACCGAGATGAGTCATGTCAAAATTGACACGGTAGGGACACTACTCATACAGGTTTTACGGTAATGTTTGTAATTGACAACATTTTTCTTAAATTCCATTTTGCTAAGATGAGTCGTTCAAAAAATGCAAAAAGTGAAGAAAAAAGCGCTAAAATGTGAGCCGTGCCATTTCAAAAGATATTTTTCTATGTTGGAATTGTATAAAAAATCTGTATTACAAAGTTGAAGCTCTAATATCTAACCGCC</canonical>
            <polymorphic>CAAATATTTGAAAATTTCGGATTGAGTTCTGGGAAAGCCCAAACTGCCTCGCTGATTATGTCGTTGCCACAAGCTGTGATAAGTGTTGCGTTGTTAGGGTGAGTTAAGATTTGAAAAATAACCGTAGCTTCTACCAATGGGAACTACCGCATTTCCTCCTAGAGTCACGTTTCCTTAAAGGGGGACTCACAAGACAATTCGTTAACACTCCTCCGAATCCATTCTAAGCAACATATATTCTGGTTTGTACGTTCGATGAGAGATCACAAACCTGAACCATGCCAACGATAGCTGATCCCAGCACTTTGTCATTTGCAAGGAAAAGTTCGGGTACAATCGCGTAAGCCGATTCTCCACTGATCGCGGCAACTGATAGATCAAAAGTGGNNNNNNNNNNNNAAGCGGGAATTGAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTCTCATTTTCCACGGCGTTTTTCGGGGATTCCGGATTTCTTTTGAACTTTTRCGCAATAATATTAGGAAAGTAGATAACTTTTAACACATTTCAATGCAATAAAATTTTTTGGTCGGAGTCCCCCTTCAAACAGTCTGAACTGCGACTAAACTTTTGAAAAATTTGAATGGCGACCTAAATTTCAATTTTAAGACAATTGATTTCGGTACCTGTCGATAATATCAAAAAATCGTAAACTGATAAACTGTTTGAAGTATCATAATGACCAATTTGTTAGTTAACAAGTTTTCTATTTCATGGACAGGTACCGAGATGAGTCATGTCAAAATTGACACGGTAGGGACACTACTCATACAGGTTTTACGGTAATGTTTGTAATTGACAACATTTTTCTTAAATTCCATTTTGCTAAGATGAGTCGTTCAAAAAATGCAAAAAGTGAAGAAAAAAGCGCTAAAATGTGAGCCGTGCCATTTCAAAAGATATTTTTCTATGTTGGAATTGTATAAAAAATCTGTATTACAAAGTTGAAGCTCTAATATCTAACCGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>504 277 219</canonical_bands>
                <polymorphic_bands>781 219</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAATTTTTCTCATTTTCCAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAAAAGTTTAGTCGCAGT</pcr_primer_p2>
		<pcr_amplicon_size>170</pcr_amplicon_size>
		<canonical_amplicon>TTGAATTTTTCTCATTTTCCACGGCGTTTTTCGGGGATTCCGGATTTCTTTTGAACTTTTTCGCAATAATATTAGGAAAGTAGATAACTTTTAACACATTTCAATGCAATAAAATTTTTTGGTCGGAGTCCCCCTTCAAACAGTCTGAACTGCGACTAAACTTTTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTGAATTTTTCTCATTTTCCACGGCGTTTTTCGGGGATTCCGGATTTCTTTTGAACTTTTRCGCAATAATATTAGGAAAGTAGATAACTTTTAACACATTTCAATGCAATAAAATTTTTTGGTCGGAGTCCCCCTTCAAACAGTCTGAACTGCGACTAAACTTTTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24865</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>715968</contig_pos>
        <strand>-</strand>
        <context>TTAACACATT[A/G]RAATGCAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAACTTTTTCGCAATAATATTAGGAAAGTAGATAACTTTTAACACATT</left_flank>
        <right_flank>CAATGCAATAAAATTTTTTGGTCGGAGTCCCCCTTCAAACAGTCTGAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTGCCTCGCTGATTATGTCGTTGCCACAAGCTGTGATAAGTGTTGCGTTGTTAGGGTGAGTTAAGATTTGAAAAATAACCGTAGCTTCTACCAATGGGAACTACCGCATTTCCTCCTAGAGTCACGTTTCCTTAAAGGGGGACTCACAAGACAATTCGTTAACACTCCTCCGAATCCATTCTAAGCAACATATATTCTGGTTTGTACGTTCGATGAGAGATCACAAACCTGAACCATGCCAACGATAGCTGATCCCAGCACTTTGTCATTTGCAAGGAAAAGTTCGGGTACAATCGCGTAAGCCGATTCTCCACTGATCGCGGCAACTGATAGATCAAAAGTGGNNNNNNNNNNNNAAGCGGGAATTGAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTCTCATTTTCCACGGCGTTTTTCGGGGATTCCGGATTTCTTTTGAACTTTTTCGCAATAATATTAGGAAAGTAGATAACTTTTAACACATTTCAATGCAATAAAATTTTTTGGTCGGAGTCCCCCTTCAAACAGTCTGAACTGCGACTAAACTTTTGAAAAATTTGAATGGCGACCTAAATTTCAATTTTAAGACAATTGATTTCGGTACCTGTCGATAATATCAAAAAATCGTAAACTGATAAACTGTTTGAAGTATCATAATGACCAATTTGTTAGTTAACAAGTTTTCTATTTCATGGACAGGTACCGAGATGAGTCATGTCAAAATTGACACGGTAGGGACACTACTCATACAGGTTTTACGGTAATGTTTGTAATTGACAACATTTTTCTTAAATTCCATTTTGCTAAGATGAGTCGTTCAAAAAATGCAAAAAGTGAAGAAAAAAGCGCTAAAATGTGAGCCGTGCCATTTCAAAAGATATTTTTCTATGTTGGAATTGTATAAAAAATCTGTATTACAAAGTTGAAGCTCTAATATCTAACCGCCAAACCAGTGTTATTAAATGTGATCAGTTTTATCGTCCAGC</canonical>
            <polymorphic>AAACTGCCTCGCTGATTATGTCGTTGCCACAAGCTGTGATAAGTGTTGCGTTGTTAGGGTGAGTTAAGATTTGAAAAATAACCGTAGCTTCTACCAATGGGAACTACCGCATTTCCTCCTAGAGTCACGTTTCCTTAAAGGGGGACTCACAAGACAATTCGTTAACACTCCTCCGAATCCATTCTAAGCAACATATATTCTGGTTTGTACGTTCGATGAGAGATCACAAACCTGAACCATGCCAACGATAGCTGATCCCAGCACTTTGTCATTTGCAAGGAAAAGTTCGGGTACAATCGCGTAAGCCGATTCTCCACTGATCGCGGCAACTGATAGATCAAAAGTGGNNNNNNNNNNNNAAGCGGGAATTGAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTCTCATTTTCCACGGCGTTTTTCGGGGATTCCGGATTTCTTTTGAACTTTTTCGCAATAATATTAGGAAAGTAGATAACTTTTAACACATTRCAATGCAATAAAATTTTTTGGTCGGAGTCCCCCTTCAAACAGTCTGAACTGCGACTAAACTTTTGAAAAATTTGAATGGCGACCTAAATTTCAATTTTAAGACAATTGATTTCGGTACCTGTCGATAATATCAAAAAATCGTAAACTGATAAACTGTTTGAAGTATCATAATGACCAATTTGTTAGTTAACAAGTTTTCTATTTCATGGACAGGTACCGAGATGAGTCATGTCAAAATTGACACGGTAGGGACACTACTCATACAGGTTTTACGGTAATGTTTGTAATTGACAACATTTTTCTTAAATTCCATTTTGCTAAGATGAGTCGTTCAAAAAATGCAAAAAGTGAAGAAAAAAGCGCTAAAATGTGAGCCGTGCCATTTCAAAAGATATTTTTCTATGTTGGAATTGTATAAAAAATCTGTATTACAAAGTTGAAGCTCTAATATCTAACCGCCAAACCAGTGTTATTAAATGTGATCAGTTTTATCGTCCAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAATTTTTCTCATTTTCCAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAAAAGTTTAGTCGCAGT</pcr_primer_p2>
		<pcr_amplicon_size>170</pcr_amplicon_size>
		<canonical_amplicon>TTGAATTTTTCTCATTTTCCACGGCGTTTTTCGGGGATTCCGGATTTCTTTTGAACTTTTTCGCAATAATATTAGGAAAGTAGATAACTTTTAACACATTTCAATGCAATAAAATTTTTTGGTCGGAGTCCCCCTTCAAACAGTCTGAACTGCGACTAAACTTTTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTGAATTTTTCTCATTTTCCACGGCGTTTTTCGGGGATTCCGGATTTCTTTTGAACTTTTTCGCAATAATATTAGGAAAGTAGATAACTTTTAACACATTRCAATGCAATAAAATTTTTTGGTCGGAGTCCCCCTTCAAACAGTCTGAACTGCGACTAAACTTTTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24866</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>715969</contig_pos>
        <strand>-</strand>
        <context>TAACACATTR[A/G]AATGCAATAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAACTTTTTCGCAATAATATTAGGAAAGTAGATAACTTTTAACACATTT</left_flank>
        <right_flank>AATGCAATAAAATTTTTTGGTCGGAGTCCCCCTTCAAACAGTCTGAACTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTGCCTCGCTGATTATGTCGTTGCCACAAGCTGTGATAAGTGTTGCGTTGTTAGGGTGAGTTAAGATTTGAAAAATAACCGTAGCTTCTACCAATGGGAACTACCGCATTTCCTCCTAGAGTCACGTTTCCTTAAAGGGGGACTCACAAGACAATTCGTTAACACTCCTCCGAATCCATTCTAAGCAACATATATTCTGGTTTGTACGTTCGATGAGAGATCACAAACCTGAACCATGCCAACGATAGCTGATCCCAGCACTTTGTCATTTGCAAGGAAAAGTTCGGGTACAATCGCGTAAGCCGATTCTCCACTGATCGCGGCAACTGATAGATCAAAAGTGGNNNNNNNNNNNNAAGCGGGAATTGAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTCTCATTTTCCACGGCGTTTTTCGGGGATTCCGGATTTCTTTTGAACTTTTTCGCAATAATATTAGGAAAGTAGATAACTTTTAACACATTTCAATGCAATAAAATTTTTTGGTCGGAGTCCCCCTTCAAACAGTCTGAACTGCGACTAAACTTTTGAAAAATTTGAATGGCGACCTAAATTTCAATTTTAAGACAATTGATTTCGGTACCTGTCGATAATATCAAAAAATCGTAAACTGATAAACTGTTTGAAGTATCATAATGACCAATTTGTTAGTTAACAAGTTTTCTATTTCATGGACAGGTACCGAGATGAGTCATGTCAAAATTGACACGGTAGGGACACTACTCATACAGGTTTTACGGTAATGTTTGTAATTGACAACATTTTTCTTAAATTCCATTTTGCTAAGATGAGTCGTTCAAAAAATGCAAAAAGTGAAGAAAAAAGCGCTAAAATGTGAGCCGTGCCATTTCAAAAGATATTTTTCTATGTTGGAATTGTATAAAAAATCTGTATTACAAAGTTGAAGCTCTAATATCTAACCGCCAAACCAGTGTTATTAAATGTGATCAGTTTTATCGTCCAGCT</canonical>
            <polymorphic>AACTGCCTCGCTGATTATGTCGTTGCCACAAGCTGTGATAAGTGTTGCGTTGTTAGGGTGAGTTAAGATTTGAAAAATAACCGTAGCTTCTACCAATGGGAACTACCGCATTTCCTCCTAGAGTCACGTTTCCTTAAAGGGGGACTCACAAGACAATTCGTTAACACTCCTCCGAATCCATTCTAAGCAACATATATTCTGGTTTGTACGTTCGATGAGAGATCACAAACCTGAACCATGCCAACGATAGCTGATCCCAGCACTTTGTCATTTGCAAGGAAAAGTTCGGGTACAATCGCGTAAGCCGATTCTCCACTGATCGCGGCAACTGATAGATCAAAAGTGGNNNNNNNNNNNNAAGCGGGAATTGAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTCTCATTTTCCACGGCGTTTTTCGGGGATTCCGGATTTCTTTTGAACTTTTTCGCAATAATATTAGGAAAGTAGATAACTTTTAACACATTTRAATGCAATAAAATTTTTTGGTCGGAGTCCCCCTTCAAACAGTCTGAACTGCGACTAAACTTTTGAAAAATTTGAATGGCGACCTAAATTTCAATTTTAAGACAATTGATTTCGGTACCTGTCGATAATATCAAAAAATCGTAAACTGATAAACTGTTTGAAGTATCATAATGACCAATTTGTTAGTTAACAAGTTTTCTATTTCATGGACAGGTACCGAGATGAGTCATGTCAAAATTGACACGGTAGGGACACTACTCATACAGGTTTTACGGTAATGTTTGTAATTGACAACATTTTTCTTAAATTCCATTTTGCTAAGATGAGTCGTTCAAAAAATGCAAAAAGTGAAGAAAAAAGCGCTAAAATGTGAGCCGTGCCATTTCAAAAGATATTTTTCTATGTTGGAATTGTATAAAAAATCTGTATTACAAAGTTGAAGCTCTAATATCTAACCGCCAAACCAGTGTTATTAAATGTGATCAGTTTTATCGTCCAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAATTTTTCTCATTTTCCAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAAAAGTTTAGTCGCAGT</pcr_primer_p2>
		<pcr_amplicon_size>170</pcr_amplicon_size>
		<canonical_amplicon>TTGAATTTTTCTCATTTTCCACGGCGTTTTTCGGGGATTCCGGATTTCTTTTGAACTTTTTCGCAATAATATTAGGAAAGTAGATAACTTTTAACACATTTCAATGCAATAAAATTTTTTGGTCGGAGTCCCCCTTCAAACAGTCTGAACTGCGACTAAACTTTTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTGAATTTTTCTCATTTTCCACGGCGTTTTTCGGGGATTCCGGATTTCTTTTGAACTTTTTCGCAATAATATTAGGAAAGTAGATAACTTTTAACACATTTRAATGCAATAAAATTTTTTGGTCGGAGTCCCCCTTCAAACAGTCTGAACTGCGACTAAACTTTTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24867</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>745382</contig_pos>
        <strand></strand>
        <context>aatgttggac[T/A]gttaaagaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TAATTTTTCCGTTATTTTCCATCAGTAACGTCGTAAAAAAAATGTTGGAC</left_flank>
        <right_flank>GTTAAAGAATTGACTGAAAACGCAAAAAATATCGAGAAGAAACCTAAAAA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGTTTTTCATCGGTATCAAAGTTTTTGGGGGTTACTGTAAAATGTTTGTTGTTTCATAGTAATCCTTCTCTGTCACTTATTTGACGACTTTTTGTGATAGTATTAAAACGAATAACGTCATCCCGATGTGTGAACATACAAAATACAAGTTTTGAGTAGAGTTGTTAATTTTTTTGGCTTTATGAGTAATCAACAGATTCGTATTTTGGATTCAGATCGTTTAGTCTTTTGTGGGAAATTGGAAATGTTTGACTAACTGACTCAGAACATGCTTGGGGGACCACAACTTATGTATCCGAAAAACGCTGTAGGAATGTTATACTGGTACAAAAAATCAGAGCTGTGAAGGAAAAACGGCGAATGCCGAAGGTCCCACAGCAACAACTACCGTTACTGGAAGATATTTTCGTTTTCAGGATTCGTTTTCTCATTTTCACTGCTTTTTGTTAATTTTTCCGTTATTTTCCATCAGTAACGTCGTAAAAAAAATGTTGGACTGTTAAAGAATTGACTGAAAACGCAAAAAATATCGAGAAGAAACCTAAAAATGAAAATGTTTTTAGTGTACGGTAGCGGTCGTTGTGGAACCTTCGGCCACGGGTTCTCGTCCACAGATGGTCATCATAATATGGAGCTTTAAATCTCAGAAGTTATGAACTTCACAAATCTTATTCTTTCTAAATGGAATTCCACTAAAAAAAATCATTCAAACCAAATATTTTCTTACCATCTATAAACGAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTCTGCTGTAAAACCTGCAATAGAAAGGTGTTCACACTGTCAAATTTGTCCCAATTATCTCAATTCCTATGCAAGATGTAAAAAATGTGCCAACTGACCAAACAATTCTGATATTGTGCTAAACGATTTTTATTTAAAGGTACTCATGTTACTCTGAAATTTTGAAGCTTTGAGTTCAAAATATACAGAGATGATTCACAAAAAAAATATTATTCGA</canonical>
            <polymorphic>TGAGTTTTTCATCGGTATCAAAGTTTTTGGGGGTTACTGTAAAATGTTTGTTGTTTCATAGTAATCCTTCTCTGTCACTTATTTGACGACTTTTTGTGATAGTATTAAAACGAATAACGTCATCCCGATGTGTGAACATACAAAATACAAGTTTTGAGTAGAGTTGTTAATTTTTTTGGCTTTATGAGTAATCAACAGATTCGTATTTTGGATTCAGATCGTTTAGTCTTTTGTGGGAAATTGGAAATGTTTGACTAACTGACTCAGAACATGCTTGGGGGACCACAACTTATGTATCCGAAAAACGCTGTAGGAATGTTATACTGGTACAAAAAATCAGAGCTGTGAAGGAAAAACGGCGAATGCCGAAGGTCCCACAGCAACAACTACCGTTACTGGAAGATATTTTCGTTTTCAGGATTCGTTTTCTCATTTTCACTGCTTTTTGTTAATTTTTCCGTTATTTTCCATCAGTAACGTCGTAAAAAAAATGTTGGACWGTTAAAGAATTGACTGAAAACGCAAAAAATATCGAGAAGAAACCTAAAAATGAAAATGTTTTTAGTGTACGGTAGCGGTCGTTGTGGAACCTTCGGCCACGGGTTCTCGTCCACAGATGGTCATCATAATATGGAGCTTTAAATCTCAGAAGTTATGAACTTCACAAATCTTATTCTTTCTAAATGGAATTCCACTAAAAAAAATCATTCAAACCAAATATTTTCTTACCATCTATAAACGAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTCTGCTGTAAAACCTGCAATAGAAAGGTGTTCACACTGTCAAATTTGTCCCAATTATCTCAATTCCTATGCAAGATGTAAAAAATGTGCCAACTGACCAAACAATTCTGATATTGTGCTAAACGATTTTTATTTAAAGGTACTCATGTTACTCTGAAATTTTGAAGCTTTGAGTTCAAAATATACAGAGATGATTCACAAAAAAAATATTATTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATCCGAAAAACGCTGTAG</pcr_primer_p1>
		<pcr_primer_p2>TAAAGCTCCATATTATGATGACC</pcr_primer_p2>
		<pcr_amplicon_size>348</pcr_amplicon_size>
		<canonical_amplicon>GTATCCGAAAAACGCTGTAGGAATGTTATACTGGTACAAAAAATCAGAGCTGTGAAGGAAAAACGGCGAATGCCGAAGGTCCCACAGCAACAACTACCGTTACTGGAAGATATTTTCGTTTTCAGGATTCGTTTTCTCATTTTCACTGCTTTTTGTTAATTTTTCCGTTATTTTCCATCAGTAACGTCGTAAAAAAAATGTTGGACTGTTAAAGAATTGACTGAAAACGCAAAAAATATCGAGAAGAAACCTAAAAATGAAAATGTTTTTAGTGTACGGTAGCGGTCGTTGTGGAACCTTCGGCCACGGGTTCTCGTCCACAGATGGTCATCATAATATGGAGCTTTA</canonical_amplicon>
		<polymorphic_amplicon>GTATCCGAAAAACGCTGTAGGAATGTTATACTGGTACAAAAAATCAGAGCTGTGAAGGAAAAACGGCGAATGCCGAAGGTCCCACAGCAACAACTACCGTTACTGGAAGATATTTTCGTTTTCAGGATTCGTTTTCTCATTTTCACTGCTTTTTGTTAATTTTTCCGTTATTTTCCATCAGTAACGTCGTAAAAAAAATGTTGGACWGTTAAAGAATTGACTGAAAACGCAAAAAATATCGAGAAGAAACCTAAAAATGAAAATGTTTTTAGTGTACGGTAGCGGTCGTTGTGGAACCTTCGGCCACGGGTTCTCGTCCACAGATGGTCATCATAATATGGAGCTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24868</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>745579</contig_pos>
        <strand>+</strand>
        <context>GAATTCCACT[A/T]AAAAAAMTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGAAGTTATGAACTTCACAAATCTTATTCTTTCTAAATGGAATTCCACT</left_flank>
        <right_flank>AAAAAAATCATTCAAACCAAATATTTTCTTACCATCTATAAACGAATTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTCGTATTTTGGATTCAGATCGTTTAGTCTTTTGTGGGAAATTGGAAATGTTTGACTAACTGACTCAGAACATGCTTGGGGGACCACAACTTATGTATCCGAAAAACGCTGTAGGAATGTTATACTGGTACAAAAAATCAGAGCTGTGAAGGAAAAACGGCGAATGCCGAAGGTCCCACAGCAACAACTACCGTTACTGGAAGATATTTTCGTTTTCAGGATTCGTTTTCTCATTTTCACTGCTTTTTGTTAATTTTTCCGTTATTTTCCATCAGTAACGTCGTAAAAAAAATGTTGGACTGTTAAAGAATTGACTGAAAACGCAAAAAATATCGAGAAGAAACCTAAAAATGAAAATGTTTTTAGTGTACGGTAGCGGTCGTTGTGGAACCTTCGGCCACGGGTTCTCGTCCACAGATGGTCATCATAATATGGAGCTTTAAATCTCAGAAGTTATGAACTTCACAAATCTTATTCTTTCTAAATGGAATTCCACTAAAAAAAATCATTCAAACCAAATATTTTCTTACCATCTATAAACGAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTCTGCTGTAAAACCTGCAATAGAAAGGTGTTCACACTGTCAAATTTGTCCCAATTATCTCAATTCCTATGCAAGATGTAAAAAATGTGCCAACTGACCAAACAATTCTGATATTGTGCTAAACGATTTTTATTTAAAGGTACTCATGTTACTCTGAAATTTTGAAGCTTTGAGTTCAAAATATACAGAGATGATTCACAAAAAAAATATTATTCGAAATTCTGAATTTGCAGACTGAATGAAACTTTGGAAGTGGACTACTCGGGTGTCTGCTGCGAAGACATGTGTTCGGCCGGTCAAACAACTCTAACAGTTTGCGATTCGGAGGGCAAAACGCATACTGATATATGTTCTTTCTACGTTGTAAGTGTCCTTTTTTCTGTTTCCGATATATTCCTGCTGTCGTCACAAAGA</canonical>
            <polymorphic>GATTCGTATTTTGGATTCAGATCGTTTAGTCTTTTGTGGGAAATTGGAAATGTTTGACTAACTGACTCAGAACATGCTTGGGGGACCACAACTTATGTATCCGAAAAACGCTGTAGGAATGTTATACTGGTACAAAAAATCAGAGCTGTGAAGGAAAAACGGCGAATGCCGAAGGTCCCACAGCAACAACTACCGTTACTGGAAGATATTTTCGTTTTCAGGATTCGTTTTCTCATTTTCACTGCTTTTTGTTAATTTTTCCGTTATTTTCCATCAGTAACGTCGTAAAAAAAATGTTGGACTGTTAAAGAATTGACTGAAAACGCAAAAAATATCGAGAAGAAACCTAAAAATGAAAATGTTTTTAGTGTACGGTAGCGGTCGTTGTGGAACCTTCGGCCACGGGTTCTCGTCCACAGATGGTCATCATAATATGGAGCTTTAAATCTCAGAAGTTATGAACTTCACAAATCTTATTCTTTCTAAATGGAATTCCACTWAAAAAAATCATTCAAACCAAATATTTTCTTACCATCTATAAACGAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTCTGCTGTAAAACCTGCAATAGAAAGGTGTTCACACTGTCAAATTTGTCCCAATTATCTCAATTCCTATGCAAGATGTAAAAAATGTGCCAACTGACCAAACAATTCTGATATTGTGCTAAACGATTTTTATTTAAAGGTACTCATGTTACTCTGAAATTTTGAAGCTTTGAGTTCAAAATATACAGAGATGATTCACAAAAAAAATATTATTCGAAATTCTGAATTTGCAGACTGAATGAAACTTTGGAAGTGGACTACTCGGGTGTCTGCTGCGAAGACATGTGTTCGGCCGGTCAAACAACTCTAACAGTTTGCGATTCGGAGGGCAAAACGCATACTGATATATGTTCTTTCTACGTTGTAAGTGTCCTTTTTTCTGTTTCCGATATATTCCTGCTGTCGTCACAAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCATCATAATATGGAGCTTTA</pcr_primer_p1>
		<pcr_primer_p2>CAGACAACCCATATCTTACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>170</pcr_amplicon_size>
		<canonical_amplicon>GGTCATCATAATATGGAGCTTTAAATCTCAGAAGTTATGAACTTCACAAATCTTATTCTTTCTAAATGGAATTCCACTAAAAAAAATCATTCAAACCAAATATTTTCTTACCATCTATAAACGAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTCTG</canonical_amplicon>
		<polymorphic_amplicon>GGTCATCATAATATGGAGCTTTAAATCTCAGAAGTTATGAACTTCACAAATCTTATTCTTTCTAAATGGAATTCCACTWAAAAAAATCATTCAAACCAAATATTTTCTTACCATCTATAAACGAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24869</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>745782</contig_pos>
        <strand>+</strand>
        <context>tctgatattg[A/G]gctaaacgat</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTATGCAAGATGTAAAAAATGTGCCAACTGACCAAACAATTCTGATATTG</left_flank>
        <right_flank>GCTAAACGATTTTTATTTAAAGGTACTCATGTTACTCTGAAATTTTGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATATTTTCGTTTTCAGGATTCGTTTTCTCATTTTCACTGCTTTTTGTTAATTTTTCCGTTATTTTCCATCAGTAACGTCGTAAAAAAAATGTTGGACTGTTAAAGAATTGACTGAAAACGCAAAAAATATCGAGAAGAAACCTAAAAATGAAAATGTTTTTAGTGTACGGTAGCGGTCGTTGTGGAACCTTCGGCCACGGGTTCTCGTCCACAGATGGTCATCATAATATGGAGCTTTAAATCTCAGAAGTTATGAACTTCACAAATCTTATTCTTTCTAAATGGAATTCCACTAAAAAAAATCATTCAAACCAAATATTTTCTTACCATCTATAAACGAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTCTGCTGTAAAACCTGCAATAGAAAGGTGTTCACACTGTCAAATTTGTCCCAATTATCTCAATTCCTATGCAAGATGTAAAAAATGTGCCAACTGACCAAACAATTCTGATATTGTGCTAAACGATTTTTATTTAAAGGTACTCATGTTACTCTGAAATTTTGAAGCTTTGAGTTCAAAATATACAGAGATGATTCACAAAAAAAATATTATTCGAAATTCTGAATTTGCAGACTGAATGAAACTTTGGAAGTGGACTACTCGGGTGTCTGCTGCGAAGACATGTGTTCGGCCGGTCAAACAACTCTAACAGTTTGCGATTCGGAGGGCAAAACGCATACTGATATATGTTCTTTCTACGTTGTAAGTGTCCTTTTTTCTGTTTCCGATATATTCCTGCTGTCGTCACAAAGATCACTTTATTAGGTTCAAAAAATCATCACACATTTTTTATAGTCTGTAGCCTTTACCCTTCATGGCAACGATGATGACAATCTCAAATTCGGTTGGGCTTTTTTTGTATCCTGCCAACATGATCAGAAAATCCTATAGCAGATCATATACGTTCTCATGGCTGTGACGTAGAATAGGTGTAAACTATTTCTGACAGTCTAGTT</canonical>
            <polymorphic>AGATATTTTCGTTTTCAGGATTCGTTTTCTCATTTTCACTGCTTTTTGTTAATTTTTCCGTTATTTTCCATCAGTAACGTCGTAAAAAAAATGTTGGACTGTTAAAGAATTGACTGAAAACGCAAAAAATATCGAGAAGAAACCTAAAAATGAAAATGTTTTTAGTGTACGGTAGCGGTCGTTGTGGAACCTTCGGCCACGGGTTCTCGTCCACAGATGGTCATCATAATATGGAGCTTTAAATCTCAGAAGTTATGAACTTCACAAATCTTATTCTTTCTAAATGGAATTCCACTAAAAAAAATCATTCAAACCAAATATTTTCTTACCATCTATAAACGAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTCTGCTGTAAAACCTGCAATAGAAAGGTGTTCACACTGTCAAATTTGTCCCAATTATCTCAATTCCTATGCAAGATGTAAAAAATGTGCCAACTGACCAAACAATTCTGATATTGRGCTAAACGATTTTTATTTAAAGGTACTCATGTTACTCTGAAATTTTGAAGCTTTGAGTTCAAAATATACAGAGATGATTCACAAAAAAAATATTATTCGAAATTCTGAATTTGCAGACTGAATGAAACTTTGGAAGTGGACTACTCGGGTGTCTGCTGCGAAGACATGTGTTCGGCCGGTCAAACAACTCTAACAGTTTGCGATTCGGAGGGCAAAACGCATACTGATATATGTTCTTTCTACGTTGTAAGTGTCCTTTTTTCTGTTTCCGATATATTCCTGCTGTCGTCACAAAGATCACTTTATTAGGTTCAAAAAATCATCACACATTTTTTATAGTCTGTAGCCTTTACCCTTCATGGCAACGATGATGACAATCTCAAATTCGGTTGGGCTTTTTTTGTATCCTGCCAACATGATCAGAAAATCCTATAGCAGATCATATACGTTCTCATGGCTGTGACGTAGAATAGGTGTAAACTATTTCTGACAGTCTAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>135 129 119 83 80 57 53 51 38 38 30 29 25 24 19 19 14 14 13 13 9 4 2 2</canonical_bands>
                <polymorphic_bands>135 129 119 109 83 57 53 51 38 38 30 25 24 19 19 14 14 13 13 9 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAACCAAATATTTTCTTACCA</pcr_primer_p1>
		<pcr_primer_p2>CAAAGCTTCAAAATTTCAGAGTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCAAACCAAATATTTTCTTACCATCTATAAACGAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTCTGCTGTAAAACCTGCAATAGAAAGGTGTTCACACTGTCAAATTTGTCCCAATTATCTCAATTCCTATGCAAGATGTAAAAAATGTGCCAACTGACCAAACAATTCTGATATTGTGCTAAACGATTTTTATTTAAAGGTACTCATGTTACTCTGAAATTTTGAAGCTTTG</canonical_amplicon>
		<polymorphic_amplicon>TCAAACCAAATATTTTCTTACCATCTATAAACGAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTCTGCTGTAAAACCTGCAATAGAAAGGTGTTCACACTGTCAAATTTGTCCCAATTATCTCAATTCCTATGCAAGATGTAAAAAATGTGCCAACTGACCAAACAATTCTGATATTGRGCTAAACGATTTTTATTTAAAGGTACTCATGTTACTCTGAAATTTTGAAGCTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24870</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>745801</contig_pos>
        <strand></strand>
        <context>atttTTATTT[A/G]AAGGTACTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTGCCAACTGACCAAACAATTCTGATATTGTGCTAAACGATTTTTATTT</left_flank>
        <right_flank>AAGGTACTCATGTTACTCTGAAATTTTGAAGCTTTGAGTTCAAAATATAC</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCGTTTTCTCATTTTCACTGCTTTTTGTTAATTTTTCCGTTATTTTCCATCAGTAACGTCGTAAAAAAAATGTTGGACTGTTAAAGAATTGACTGAAAACGCAAAAAATATCGAGAAGAAACCTAAAAATGAAAATGTTTTTAGTGTACGGTAGCGGTCGTTGTGGAACCTTCGGCCACGGGTTCTCGTCCACAGATGGTCATCATAATATGGAGCTTTAAATCTCAGAAGTTATGAACTTCACAAATCTTATTCTTTCTAAATGGAATTCCACTAAAAAAAATCATTCAAACCAAATATTTTCTTACCATCTATAAACGAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTCTGCTGTAAAACCTGCAATAGAAAGGTGTTCACACTGTCAAATTTGTCCCAATTATCTCAATTCCTATGCAAGATGTAAAAAATGTGCCAACTGACCAAACAATTCTGATATTGTGCTAAACGATTTTTATTTAAAGGTACTCATGTTACTCTGAAATTTTGAAGCTTTGAGTTCAAAATATACAGAGATGATTCACAAAAAAAATATTATTCGAAATTCTGAATTTGCAGACTGAATGAAACTTTGGAAGTGGACTACTCGGGTGTCTGCTGCGAAGACATGTGTTCGGCCGGTCAAACAACTCTAACAGTTTGCGATTCGGAGGGCAAAACGCATACTGATATATGTTCTTTCTACGTTGTAAGTGTCCTTTTTTCTGTTTCCGATATATTCCTGCTGTCGTCACAAAGATCACTTTATTAGGTTCAAAAAATCATCACACATTTTTTATAGTCTGTAGCCTTTACCCTTCATGGCAACGATGATGACAATCTCAAATTCGGTTGGGCTTTTTTTGTATCCTGCCAACATGATCAGAAAATCCTATAGCAGATCATATACGTTCTCATGGCTGTGACGTAGAATAGGTGTAAACTATTTCTGACAGTCTAGTTCATCGAACAAATTTTATTA</canonical>
            <polymorphic>ATTCGTTTTCTCATTTTCACTGCTTTTTGTTAATTTTTCCGTTATTTTCCATCAGTAACGTCGTAAAAAAAATGTTGGACTGTTAAAGAATTGACTGAAAACGCAAAAAATATCGAGAAGAAACCTAAAAATGAAAATGTTTTTAGTGTACGGTAGCGGTCGTTGTGGAACCTTCGGCCACGGGTTCTCGTCCACAGATGGTCATCATAATATGGAGCTTTAAATCTCAGAAGTTATGAACTTCACAAATCTTATTCTTTCTAAATGGAATTCCACTAAAAAAAATCATTCAAACCAAATATTTTCTTACCATCTATAAACGAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTCTGCTGTAAAACCTGCAATAGAAAGGTGTTCACACTGTCAAATTTGTCCCAATTATCTCAATTCCTATGCAAGATGTAAAAAATGTGCCAACTGACCAAACAATTCTGATATTGTGCTAAACGATTTTTATTTRAAGGTACTCATGTTACTCTGAAATTTTGAAGCTTTGAGTTCAAAATATACAGAGATGATTCACAAAAAAAATATTATTCGAAATTCTGAATTTGCAGACTGAATGAAACTTTGGAAGTGGACTACTCGGGTGTCTGCTGCGAAGACATGTGTTCGGCCGGTCAAACAACTCTAACAGTTTGCGATTCGGAGGGCAAAACGCATACTGATATATGTTCTTTCTACGTTGTAAGTGTCCTTTTTTCTGTTTCCGATATATTCCTGCTGTCGTCACAAAGATCACTTTATTAGGTTCAAAAAATCATCACACATTTTTTATAGTCTGTAGCCTTTACCCTTCATGGCAACGATGATGACAATCTCAAATTCGGTTGGGCTTTTTTTGTATCCTGCCAACATGATCAGAAAATCCTATAGCAGATCATATACGTTCTCATGGCTGTGACGTAGAATAGGTGTAAACTATTTCTGACAGTCTAGTTCATCGAACAAATTTTATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 278 221</canonical_bands>
                <polymorphic_bands>779 221</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 278 137 53 30</canonical_bands>
                <polymorphic_bands>780 137 53 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTTGCAAAATTTGTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>TTGTGAATCATCTCTGTATATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTCTGCTGTAAAACCTGCAATAGAAAGGTGTTCACACTGTCAAATTTGTCCCAATTATCTCAATTCCTATGCAAGATGTAAAAAATGTGCCAACTGACCAAACAATTCTGATATTGTGCTAAACGATTTTTATTTAAAGGTACTCATGTTACTCTGAAATTTTGAAGCTTTGAGTTCAAAATATACAGAGATGATTCACAA</canonical_amplicon>
		<polymorphic_amplicon>GAATTTGCAAAATTTGTTTGATTTGTTTTGTAAGATATGGGTTGTCTGCTGTAAAACCTGCAATAGAAAGGTGTTCACACTGTCAAATTTGTCCCAATTATCTCAATTCCTATGCAAGATGTAAAAAATGTGCCAACTGACCAAACAATTCTGATATTGTGCTAAACGATTTTTATTTRAAGGTACTCATGTTACTCTGAAATTTTGAAGCTTTGAGTTCAAAATATACAGAGATGATTCACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24871</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>747499</contig_pos>
        <strand>+</strand>
        <context>CTCTTCAATT[C/T]CACCAAACTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCTATGTCACCGTGAAAAATGTTACATATAAATACATACTCTTCAATT</left_flank>
        <right_flank>CACCAAACTGATCTCTGCTTCCGAAGAGGATATCAAACAGTAATTCATTA</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAATGAAGTCGCCAAGAAGAAACTATACTGAAAGAAATGGAACTATATGTTCATAAAGAGATACACAAGTTACGGTGGTTTGAAGGGTGAGAAATTAATAGGAATTATGGCTCTGGGGAAAAATTTGCTTTTTTGAAACAAAAATGGAAAAAAAAACTGAGAACGGGTCAAAGATTTACAAGATAATTGGTGTGTCTGGAAACTAAAACAATTGTTGTCAATTTTAGTTTCTGATCTACCAAAATTCGGTTTTAAAAAAAATTAATCTTTTGGATTTGACAATTAGACTGGATCGATTTCAACTCCATCAATGTCGATGGAGTTGTACTGGACGATCTTCGGTCGCTCGCGATGTTTTGAGATAATGTCGCAAATATCATCGTAGATCTGGAACAAGGAAATATTAGATAGCTTGGTTAGGAGATAGGGTTTGAAAAGTGTGTATTTTCTATGTCACCGTGAAAAATGTTACATATAAATACATACTCTTCAATTTCACCAAACTGATCTCTGCTTCCGAAGAGGATATCAAACAGTAATTCATTAAAACGTTCTAATAACAACAAAAGAATTCGGTCAGTTTATACATTTGTAACATCTTGAGTTGTTCCTTCTCAGAAAAGTTTTACATTACTATATGTCTCCGGCAATTTCGATTTCGAATACCGTAAATGCTCTACTAGAAGCTCACCCTATATCACTCGAACTCAATTATTTTAGTTCCTAGGTGAGATATCAAAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTTCAGTTAAAATGTGTTGACATATTTCAGAAGAACCAAGATAATTGTACTCGAAGTGCATTTATAGGATGGGCTTCTAACAGAGAAAGTTTATGAAGAACCCCAAAACTCAAAATTGACCCAATTCATTTTCGCTCCTAAGAATATTCAACTGTGTTACATTAACAATTTTTTAATAATAGTAAAGGGGAAAATTCTGCTGTTCAAAAAAATCAATATC</canonical>
            <polymorphic>AAAAAAATGAAGTCGCCAAGAAGAAACTATACTGAAAGAAATGGAACTATATGTTCATAAAGAGATACACAAGTTACGGTGGTTTGAAGGGTGAGAAATTAATAGGAATTATGGCTCTGGGGAAAAATTTGCTTTTTTGAAACAAAAATGGAAAAAAAAACTGAGAACGGGTCAAAGATTTACAAGATAATTGGTGTGTCTGGAAACTAAAACAATTGTTGTCAATTTTAGTTTCTGATCTACCAAAATTCGGTTTTAAAAAAAATTAATCTTTTGGATTTGACAATTAGACTGGATCGATTTCAACTCCATCAATGTCGATGGAGTTGTACTGGACGATCTTCGGTCGCTCGCGATGTTTTGAGATAATGTCGCAAATATCATCGTAGATCTGGAACAAGGAAATATTAGATAGCTTGGTTAGGAGATAGGGTTTGAAAAGTGTGTATTTTCTATGTCACCGTGAAAAATGTTACATATAAATACATACTCTTCAATTYCACCAAACTGATCTCTGCTTCCGAAGAGGATATCAAACAGTAATTCATTAAAACGTTCTAATAACAACAAAAGAATTCGGTCAGTTTATACATTTGTAACATCTTGAGTTGTTCCTTCTCAGAAAAGTTTTACATTACTATATGTCTCCGGCAATTTCGATTTCGAATACCGTAAATGCTCTACTAGAAGCTCACCCTATATCACTCGAACTCAATTATTTTAGTTCCTAGGTGAGATATCAAAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTTCAGTTAAAATGTGTTGACATATTTCAGAAGAACCAAGATAATTGTACTCGAAGTGCATTTATAGGATGGGCTTCTAACAGAGAAAGTTTATGAAGAACCCCAAAACTCAAAATTGACCCAATTCATTTTCGCTCCTAAGAATATTCAACTGTGTTACATTAACAATTTTTTAATAATAGTAAAGGGGAAAATTCTGCTGTTCAAAAAAATCAATATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATCATCGTAGATCTGGAACAA</pcr_primer_p1>
		<pcr_primer_p2>ACTTTTCTGAGAAGGAACAACTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATATCATCGTAGATCTGGAACAAGGAAATATTAGATAGCTTGGTTAGGAGATAGGGTTTGAAAAGTGTGTATTTTCTATGTCACCGTGAAAAATGTTACATATAAATACATACTCTTCAATTTCACCAAACTGATCTCTGCTTCCGAAGAGGATATCAAACAGTAATTCATTAAAACGTTCTAATAACAACAAAAGAATTCGGTCAGTTTATACATTTGTAACATCTTGAGTTGTTCCTTCTCAGAAAAGT</canonical_amplicon>
		<polymorphic_amplicon>ATATCATCGTAGATCTGGAACAAGGAAATATTAGATAGCTTGGTTAGGAGATAGGGTTTGAAAAGTGTGTATTTTCTATGTCACCGTGAAAAATGTTACATATAAATACATACTCTTCAATTYCACCAAACTGATCTCTGCTTCCGAAGAGGATATCAAACAGTAATTCATTAAAACGTTCTAATAACAACAAAAGAATTCGGTCAGTTTATACATTTGTAACATCTTGAGTTGTTCCTTCTCAGAAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24872</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>747669</contig_pos>
        <strand></strand>
        <context>ATTTCGAATa[C/A]cgtaaatgct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CAGAAAAGTTTTACATTACTATATGTCTCCGGCAATTTCGATTTCGAATA</left_flank>
        <right_flank>CGTAAATGCTCTACTAGAAGCTCACCCTATATCACTCGAACTCAATTATT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCAAAGATTTACAAGATAATTGGTGTGTCTGGAAACTAAAACAATTGTTGTCAATTTTAGTTTCTGATCTACCAAAATTCGGTTTTAAAAAAAATTAATCTTTTGGATTTGACAATTAGACTGGATCGATTTCAACTCCATCAATGTCGATGGAGTTGTACTGGACGATCTTCGGTCGCTCGCGATGTTTTGAGATAATGTCGCAAATATCATCGTAGATCTGGAACAAGGAAATATTAGATAGCTTGGTTAGGAGATAGGGTTTGAAAAGTGTGTATTTTCTATGTCACCGTGAAAAATGTTACATATAAATACATACTCTTCAATTTCACCAAACTGATCTCTGCTTCCGAAGAGGATATCAAACAGTAATTCATTAAAACGTTCTAATAACAACAAAAGAATTCGGTCAGTTTATACATTTGTAACATCTTGAGTTGTTCCTTCTCAGAAAAGTTTTACATTACTATATGTCTCCGGCAATTTCGATTTCGAATACCGTAAATGCTCTACTAGAAGCTCACCCTATATCACTCGAACTCAATTATTTTAGTTCCTAGGTGAGATATCAAAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTTCAGTTAAAATGTGTTGACATATTTCAGAAGAACCAAGATAATTGTACTCGAAGTGCATTTATAGGATGGGCTTCTAACAGAGAAAGTTTATGAAGAACCCCAAAACTCAAAATTGACCCAATTCATTTTCGCTCCTAAGAATATTCAACTGTGTTACATTAACAATTTTTTAATAATAGTAAAGGGGAAAATTCTGCTGTTCAAAAAAATCAATATCTTCGGCAGAAATTAAGATAAATTAGGTCAAAATTGATATTTGATATGACGTACTTTTCTTTCACAGGTTTTACATTACTGTATCACTTTTGGAAATTTGAATTCCAGTATTAGTGTCACCGCATTTTTTCTCTCCTACCCAAATTGCCAACTTTGAGCTCAATTATCTGA</canonical>
            <polymorphic>GTCAAAGATTTACAAGATAATTGGTGTGTCTGGAAACTAAAACAATTGTTGTCAATTTTAGTTTCTGATCTACCAAAATTCGGTTTTAAAAAAAATTAATCTTTTGGATTTGACAATTAGACTGGATCGATTTCAACTCCATCAATGTCGATGGAGTTGTACTGGACGATCTTCGGTCGCTCGCGATGTTTTGAGATAATGTCGCAAATATCATCGTAGATCTGGAACAAGGAAATATTAGATAGCTTGGTTAGGAGATAGGGTTTGAAAAGTGTGTATTTTCTATGTCACCGTGAAAAATGTTACATATAAATACATACTCTTCAATTTCACCAAACTGATCTCTGCTTCCGAAGAGGATATCAAACAGTAATTCATTAAAACGTTCTAATAACAACAAAAGAATTCGGTCAGTTTATACATTTGTAACATCTTGAGTTGTTCCTTCTCAGAAAAGTTTTACATTACTATATGTCTCCGGCAATTTCGATTTCGAATAMCGTAAATGCTCTACTAGAAGCTCACCCTATATCACTCGAACTCAATTATTTTAGTTCCTAGGTGAGATATCAAAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTTCAGTTAAAATGTGTTGACATATTTCAGAAGAACCAAGATAATTGTACTCGAAGTGCATTTATAGGATGGGCTTCTAACAGAGAAAGTTTATGAAGAACCCCAAAACTCAAAATTGACCCAATTCATTTTCGCTCCTAAGAATATTCAACTGTGTTACATTAACAATTTTTTAATAATAGTAAAGGGGAAAATTCTGCTGTTCAAAAAAATCAATATCTTCGGCAGAAATTAAGATAAATTAGGTCAAAATTGATATTTGATATGACGTACTTTTCTTTCACAGGTTTTACATTACTGTATCACTTTTGGAAATTTGAATTCCAGTATTAGTGTCACCGCATTTTTTCTCTCCTACCCAAATTGCCAACTTTGAGCTCAATTATCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>292 262 146 132 91 77</canonical_bands>
                <polymorphic_bands>394 292 146 91 77</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCTTCTCAGAAAAGTTTTACA</pcr_primer_p1>
		<pcr_primer_p2>TGTTAGAAGCCCATCCTATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCCTTCTCAGAAAAGTTTTACATTACTATATGTCTCCGGCAATTTCGATTTCGAATACCGTAAATGCTCTACTAGAAGCTCACCCTATATCACTCGAACTCAATTATTTTAGTTCCTAGGTGAGATATCAAAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTTCAGTTAAAATGTGTTGACATATTTCAGAAGAACCAAGATAATTGTACTCGAAGTGCATTTATAGGATGGGCTTCTAACA</canonical_amplicon>
		<polymorphic_amplicon>TTCCTTCTCAGAAAAGTTTTACATTACTATATGTCTCCGGCAATTTCGATTTCGAATAMCGTAAATGCTCTACTAGAAGCTCACCCTATATCACTCGAACTCAATTATTTTAGTTCCTAGGTGAGATATCAAAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTTCAGTTAAAATGTGTTGACATATTTCAGAAGAACCAAGATAATTGTACTCGAAGTGCATTTATAGGATGGGCTTCTAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24873</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>747741</contig_pos>
        <strand></strand>
        <context>gtgagatatc[A/G]aaagtttgtc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCACCCTATATCACTCGAACTCAATTATTTTAGTTCCTAGGTGAGATATC</left_flank>
        <right_flank>AAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTTCAGTTAAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAAATTCGGTTTTAAAAAAAATTAATCTTTTGGATTTGACAATTAGACTGGATCGATTTCAACTCCATCAATGTCGATGGAGTTGTACTGGACGATCTTCGGTCGCTCGCGATGTTTTGAGATAATGTCGCAAATATCATCGTAGATCTGGAACAAGGAAATATTAGATAGCTTGGTTAGGAGATAGGGTTTGAAAAGTGTGTATTTTCTATGTCACCGTGAAAAATGTTACATATAAATACATACTCTTCAATTTCACCAAACTGATCTCTGCTTCCGAAGAGGATATCAAACAGTAATTCATTAAAACGTTCTAATAACAACAAAAGAATTCGGTCAGTTTATACATTTGTAACATCTTGAGTTGTTCCTTCTCAGAAAAGTTTTACATTACTATATGTCTCCGGCAATTTCGATTTCGAATACCGTAAATGCTCTACTAGAAGCTCACCCTATATCACTCGAACTCAATTATTTTAGTTCCTAGGTGAGATATCAAAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTTCAGTTAAAATGTGTTGACATATTTCAGAAGAACCAAGATAATTGTACTCGAAGTGCATTTATAGGATGGGCTTCTAACAGAGAAAGTTTATGAAGAACCCCAAAACTCAAAATTGACCCAATTCATTTTCGCTCCTAAGAATATTCAACTGTGTTACATTAACAATTTTTTAATAATAGTAAAGGGGAAAATTCTGCTGTTCAAAAAAATCAATATCTTCGGCAGAAATTAAGATAAATTAGGTCAAAATTGATATTTGATATGACGTACTTTTCTTTCACAGGTTTTACATTACTGTATCACTTTTGGAAATTTGAATTCCAGTATTAGTGTCACCGCATTTTTTCTCTCCTACCCAAATTGCCAACTTTGAGCTCAATTATCTGAATTCCTGCAAGAGATATCAAAAAGTTTTCAAATGATAAATTATTCATCATGATATCATAAACGTTTTTTTAA</canonical>
            <polymorphic>CCAAAATTCGGTTTTAAAAAAAATTAATCTTTTGGATTTGACAATTAGACTGGATCGATTTCAACTCCATCAATGTCGATGGAGTTGTACTGGACGATCTTCGGTCGCTCGCGATGTTTTGAGATAATGTCGCAAATATCATCGTAGATCTGGAACAAGGAAATATTAGATAGCTTGGTTAGGAGATAGGGTTTGAAAAGTGTGTATTTTCTATGTCACCGTGAAAAATGTTACATATAAATACATACTCTTCAATTTCACCAAACTGATCTCTGCTTCCGAAGAGGATATCAAACAGTAATTCATTAAAACGTTCTAATAACAACAAAAGAATTCGGTCAGTTTATACATTTGTAACATCTTGAGTTGTTCCTTCTCAGAAAAGTTTTACATTACTATATGTCTCCGGCAATTTCGATTTCGAATACCGTAAATGCTCTACTAGAAGCTCACCCTATATCACTCGAACTCAATTATTTTAGTTCCTAGGTGAGATATCRAAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTTCAGTTAAAATGTGTTGACATATTTCAGAAGAACCAAGATAATTGTACTCGAAGTGCATTTATAGGATGGGCTTCTAACAGAGAAAGTTTATGAAGAACCCCAAAACTCAAAATTGACCCAATTCATTTTCGCTCCTAAGAATATTCAACTGTGTTACATTAACAATTTTTTAATAATAGTAAAGGGGAAAATTCTGCTGTTCAAAAAAATCAATATCTTCGGCAGAAATTAAGATAAATTAGGTCAAAATTGATATTTGATATGACGTACTTTTCTTTCACAGGTTTTACATTACTGTATCACTTTTGGAAATTTGAATTCCAGTATTAGTGTCACCGCATTTTTTCTCTCCTACCCAAATTGCCAACTTTGAGCTCAATTATCTGAATTCCTGCAAGAGATATCAAAAAGTTTTCAAATGATAAATTATTCATCATGATATCATAAACGTTTTTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCTTCTCAGAAAAGTTTTACA</pcr_primer_p1>
		<pcr_primer_p2>TGTTAGAAGCCCATCCTATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCCTTCTCAGAAAAGTTTTACATTACTATATGTCTCCGGCAATTTCGATTTCGAATACCGTAAATGCTCTACTAGAAGCTCACCCTATATCACTCGAACTCAATTATTTTAGTTCCTAGGTGAGATATCAAAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTTCAGTTAAAATGTGTTGACATATTTCAGAAGAACCAAGATAATTGTACTCGAAGTGCATTTATAGGATGGGCTTCTAACA</canonical_amplicon>
		<polymorphic_amplicon>TTCCTTCTCAGAAAAGTTTTACATTACTATATGTCTCCGGCAATTTCGATTTCGAATACCGTAAATGCTCTACTAGAAGCTCACCCTATATCACTCGAACTCAATTATTTTAGTTCCTAGGTGAGATATCRAAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTTCAGTTAAAATGTGTTGACATATTTCAGAAGAACCAAGATAATTGTACTCGAAGTGCATTTATAGGATGGGCTTCTAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24874</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>747783</contig_pos>
        <strand></strand>
        <context>aataaatttt[C/T]akttaaaatg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGATATCAAAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTT</left_flank>
        <right_flank>AGTTAAAATGTGTTGACATATTTCAGAAGAACCAAGATAATTGTACTCGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTAGACTGGATCGATTTCAACTCCATCAATGTCGATGGAGTTGTACTGGACGATCTTCGGTCGCTCGCGATGTTTTGAGATAATGTCGCAAATATCATCGTAGATCTGGAACAAGGAAATATTAGATAGCTTGGTTAGGAGATAGGGTTTGAAAAGTGTGTATTTTCTATGTCACCGTGAAAAATGTTACATATAAATACATACTCTTCAATTTCACCAAACTGATCTCTGCTTCCGAAGAGGATATCAAACAGTAATTCATTAAAACGTTCTAATAACAACAAAAGAATTCGGTCAGTTTATACATTTGTAACATCTTGAGTTGTTCCTTCTCAGAAAAGTTTTACATTACTATATGTCTCCGGCAATTTCGATTTCGAATACCGTAAATGCTCTACTAGAAGCTCACCCTATATCACTCGAACTCAATTATTTTAGTTCCTAGGTGAGATATCAAAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTTCAGTTAAAATGTGTTGACATATTTCAGAAGAACCAAGATAATTGTACTCGAAGTGCATTTATAGGATGGGCTTCTAACAGAGAAAGTTTATGAAGAACCCCAAAACTCAAAATTGACCCAATTCATTTTCGCTCCTAAGAATATTCAACTGTGTTACATTAACAATTTTTTAATAATAGTAAAGGGGAAAATTCTGCTGTTCAAAAAAATCAATATCTTCGGCAGAAATTAAGATAAATTAGGTCAAAATTGATATTTGATATGACGTACTTTTCTTTCACAGGTTTTACATTACTGTATCACTTTTGGAAATTTGAATTCCAGTATTAGTGTCACCGCATTTTTTCTCTCCTACCCAAATTGCCAACTTTGAGCTCAATTATCTGAATTCCTGCAAGAGATATCAAAAAGTTTTCAAATGATAAATTATTCATCATGATATCATAAACGTTTTTTTAATGACACATTTCAGATATCTTTTGCAGGAATCGAGATCATTAA</canonical>
            <polymorphic>AATTAGACTGGATCGATTTCAACTCCATCAATGTCGATGGAGTTGTACTGGACGATCTTCGGTCGCTCGCGATGTTTTGAGATAATGTCGCAAATATCATCGTAGATCTGGAACAAGGAAATATTAGATAGCTTGGTTAGGAGATAGGGTTTGAAAAGTGTGTATTTTCTATGTCACCGTGAAAAATGTTACATATAAATACATACTCTTCAATTTCACCAAACTGATCTCTGCTTCCGAAGAGGATATCAAACAGTAATTCATTAAAACGTTCTAATAACAACAAAAGAATTCGGTCAGTTTATACATTTGTAACATCTTGAGTTGTTCCTTCTCAGAAAAGTTTTACATTACTATATGTCTCCGGCAATTTCGATTTCGAATACCGTAAATGCTCTACTAGAAGCTCACCCTATATCACTCGAACTCAATTATTTTAGTTCCTAGGTGAGATATCAAAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTTYAGTTAAAATGTGTTGACATATTTCAGAAGAACCAAGATAATTGTACTCGAAGTGCATTTATAGGATGGGCTTCTAACAGAGAAAGTTTATGAAGAACCCCAAAACTCAAAATTGACCCAATTCATTTTCGCTCCTAAGAATATTCAACTGTGTTACATTAACAATTTTTTAATAATAGTAAAGGGGAAAATTCTGCTGTTCAAAAAAATCAATATCTTCGGCAGAAATTAAGATAAATTAGGTCAAAATTGATATTTGATATGACGTACTTTTCTTTCACAGGTTTTACATTACTGTATCACTTTTGGAAATTTGAATTCCAGTATTAGTGTCACCGCATTTTTTCTCTCCTACCCAAATTGCCAACTTTGAGCTCAATTATCTGAATTCCTGCAAGAGATATCAAAAAGTTTTCAAATGATAAATTATTCATCATGATATCATAAACGTTTTTTTAATGACACATTTCAGATATCTTTTGCAGGAATCGAGATCATTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCTTCTCAGAAAAGTTTTACA</pcr_primer_p1>
		<pcr_primer_p2>TGTTAGAAGCCCATCCTATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCCTTCTCAGAAAAGTTTTACATTACTATATGTCTCCGGCAATTTCGATTTCGAATACCGTAAATGCTCTACTAGAAGCTCACCCTATATCACTCGAACTCAATTATTTTAGTTCCTAGGTGAGATATCAAAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTTCAGTTAAAATGTGTTGACATATTTCAGAAGAACCAAGATAATTGTACTCGAAGTGCATTTATAGGATGGGCTTCTAACA</canonical_amplicon>
		<polymorphic_amplicon>TTCCTTCTCAGAAAAGTTTTACATTACTATATGTCTCCGGCAATTTCGATTTCGAATACCGTAAATGCTCTACTAGAAGCTCACCCTATATCACTCGAACTCAATTATTTTAGTTCCTAGGTGAGATATCAAAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTTYAGTTAAAATGTGTTGACATATTTCAGAAGAACCAAGATAATTGTACTCGAAGTGCATTTATAGGATGGGCTTCTAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24875</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>747785</contig_pos>
        <strand></strand>
        <context>taaattttya[G/T]ttaaaatgtg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATATCAAAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTTCA</left_flank>
        <right_flank>TTAAAATGTGTTGACATATTTCAGAAGAACCAAGATAATTGTACTCGAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGACTGGATCGATTTCAACTCCATCAATGTCGATGGAGTTGTACTGGACGATCTTCGGTCGCTCGCGATGTTTTGAGATAATGTCGCAAATATCATCGTAGATCTGGAACAAGGAAATATTAGATAGCTTGGTTAGGAGATAGGGTTTGAAAAGTGTGTATTTTCTATGTCACCGTGAAAAATGTTACATATAAATACATACTCTTCAATTTCACCAAACTGATCTCTGCTTCCGAAGAGGATATCAAACAGTAATTCATTAAAACGTTCTAATAACAACAAAAGAATTCGGTCAGTTTATACATTTGTAACATCTTGAGTTGTTCCTTCTCAGAAAAGTTTTACATTACTATATGTCTCCGGCAATTTCGATTTCGAATACCGTAAATGCTCTACTAGAAGCTCACCCTATATCACTCGAACTCAATTATTTTAGTTCCTAGGTGAGATATCAAAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTTCAGTTAAAATGTGTTGACATATTTCAGAAGAACCAAGATAATTGTACTCGAAGTGCATTTATAGGATGGGCTTCTAACAGAGAAAGTTTATGAAGAACCCCAAAACTCAAAATTGACCCAATTCATTTTCGCTCCTAAGAATATTCAACTGTGTTACATTAACAATTTTTTAATAATAGTAAAGGGGAAAATTCTGCTGTTCAAAAAAATCAATATCTTCGGCAGAAATTAAGATAAATTAGGTCAAAATTGATATTTGATATGACGTACTTTTCTTTCACAGGTTTTACATTACTGTATCACTTTTGGAAATTTGAATTCCAGTATTAGTGTCACCGCATTTTTTCTCTCCTACCCAAATTGCCAACTTTGAGCTCAATTATCTGAATTCCTGCAAGAGATATCAAAAAGTTTTCAAATGATAAATTATTCATCATGATATCATAAACGTTTTTTTAATGACACATTTCAGATATCTTTTGCAGGAATCGAGATCATTAAGC</canonical>
            <polymorphic>TTAGACTGGATCGATTTCAACTCCATCAATGTCGATGGAGTTGTACTGGACGATCTTCGGTCGCTCGCGATGTTTTGAGATAATGTCGCAAATATCATCGTAGATCTGGAACAAGGAAATATTAGATAGCTTGGTTAGGAGATAGGGTTTGAAAAGTGTGTATTTTCTATGTCACCGTGAAAAATGTTACATATAAATACATACTCTTCAATTTCACCAAACTGATCTCTGCTTCCGAAGAGGATATCAAACAGTAATTCATTAAAACGTTCTAATAACAACAAAAGAATTCGGTCAGTTTATACATTTGTAACATCTTGAGTTGTTCCTTCTCAGAAAAGTTTTACATTACTATATGTCTCCGGCAATTTCGATTTCGAATACCGTAAATGCTCTACTAGAAGCTCACCCTATATCACTCGAACTCAATTATTTTAGTTCCTAGGTGAGATATCAAAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTTCAKTTAAAATGTGTTGACATATTTCAGAAGAACCAAGATAATTGTACTCGAAGTGCATTTATAGGATGGGCTTCTAACAGAGAAAGTTTATGAAGAACCCCAAAACTCAAAATTGACCCAATTCATTTTCGCTCCTAAGAATATTCAACTGTGTTACATTAACAATTTTTTAATAATAGTAAAGGGGAAAATTCTGCTGTTCAAAAAAATCAATATCTTCGGCAGAAATTAAGATAAATTAGGTCAAAATTGATATTTGATATGACGTACTTTTCTTTCACAGGTTTTACATTACTGTATCACTTTTGGAAATTTGAATTCCAGTATTAGTGTCACCGCATTTTTTCTCTCCTACCCAAATTGCCAACTTTGAGCTCAATTATCTGAATTCCTGCAAGAGATATCAAAAAGTTTTCAAATGATAAATTATTCATCATGATATCATAAACGTTTTTTTAATGACACATTTCAGATATCTTTTGCAGGAATCGAGATCATTAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCTTCTCAGAAAAGTTTTACA</pcr_primer_p1>
		<pcr_primer_p2>TGTTAGAAGCCCATCCTATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCCTTCTCAGAAAAGTTTTACATTACTATATGTCTCCGGCAATTTCGATTTCGAATACCGTAAATGCTCTACTAGAAGCTCACCCTATATCACTCGAACTCAATTATTTTAGTTCCTAGGTGAGATATCAAAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTTCAGTTAAAATGTGTTGACATATTTCAGAAGAACCAAGATAATTGTACTCGAAGTGCATTTATAGGATGGGCTTCTAACA</canonical_amplicon>
		<polymorphic_amplicon>TTCCTTCTCAGAAAAGTTTTACATTACTATATGTCTCCGGCAATTTCGATTTCGAATACCGTAAATGCTCTACTAGAAGCTCACCCTATATCACTCGAACTCAATTATTTTAGTTCCTAGGTGAGATATCAAAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTTCAKTTAAAATGTGTTGACATATTTCAGAAGAACCAAGATAATTGTACTCGAAGTGCATTTATAGGATGGGCTTCTAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24876</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>747798</contig_pos>
        <strand></strand>
        <context>aaaatgtgtt[G/C]acatatttca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TGTCAACTGATAAAATATTGGTGTAAATAAATTTTCAGTTAAAATGTGTT</left_flank>
        <right_flank>ACATATTTCAGAAGAACCAAGATAATTGTACTCGAAGTGCATTTATAGGA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCAACTCCATCAATGTCGATGGAGTTGTACTGGACGATCTTCGGTCGCTCGCGATGTTTTGAGATAATGTCGCAAATATCATCGTAGATCTGGAACAAGGAAATATTAGATAGCTTGGTTAGGAGATAGGGTTTGAAAAGTGTGTATTTTCTATGTCACCGTGAAAAATGTTACATATAAATACATACTCTTCAATTTCACCAAACTGATCTCTGCTTCCGAAGAGGATATCAAACAGTAATTCATTAAAACGTTCTAATAACAACAAAAGAATTCGGTCAGTTTATACATTTGTAACATCTTGAGTTGTTCCTTCTCAGAAAAGTTTTACATTACTATATGTCTCCGGCAATTTCGATTTCGAATACCGTAAATGCTCTACTAGAAGCTCACCCTATATCACTCGAACTCAATTATTTTAGTTCCTAGGTGAGATATCAAAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTTCAGTTAAAATGTGTTGACATATTTCAGAAGAACCAAGATAATTGTACTCGAAGTGCATTTATAGGATGGGCTTCTAACAGAGAAAGTTTATGAAGAACCCCAAAACTCAAAATTGACCCAATTCATTTTCGCTCCTAAGAATATTCAACTGTGTTACATTAACAATTTTTTAATAATAGTAAAGGGGAAAATTCTGCTGTTCAAAAAAATCAATATCTTCGGCAGAAATTAAGATAAATTAGGTCAAAATTGATATTTGATATGACGTACTTTTCTTTCACAGGTTTTACATTACTGTATCACTTTTGGAAATTTGAATTCCAGTATTAGTGTCACCGCATTTTTTCTCTCCTACCCAAATTGCCAACTTTGAGCTCAATTATCTGAATTCCTGCAAGAGATATCAAAAAGTTTTCAAATGATAAATTATTCATCATGATATCATAAACGTTTTTTTAATGACACATTTCAGATATCTTTTGCAGGAATCGAGATCATTAAGCTCAAAGTGGATGG</canonical>
            <polymorphic>ATTTCAACTCCATCAATGTCGATGGAGTTGTACTGGACGATCTTCGGTCGCTCGCGATGTTTTGAGATAATGTCGCAAATATCATCGTAGATCTGGAACAAGGAAATATTAGATAGCTTGGTTAGGAGATAGGGTTTGAAAAGTGTGTATTTTCTATGTCACCGTGAAAAATGTTACATATAAATACATACTCTTCAATTTCACCAAACTGATCTCTGCTTCCGAAGAGGATATCAAACAGTAATTCATTAAAACGTTCTAATAACAACAAAAGAATTCGGTCAGTTTATACATTTGTAACATCTTGAGTTGTTCCTTCTCAGAAAAGTTTTACATTACTATATGTCTCCGGCAATTTCGATTTCGAATACCGTAAATGCTCTACTAGAAGCTCACCCTATATCACTCGAACTCAATTATTTTAGTTCCTAGGTGAGATATCAAAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTTCAGTTAAAATGTGTTSACATATTTCAGAAGAACCAAGATAATTGTACTCGAAGTGCATTTATAGGATGGGCTTCTAACAGAGAAAGTTTATGAAGAACCCCAAAACTCAAAATTGACCCAATTCATTTTCGCTCCTAAGAATATTCAACTGTGTTACATTAACAATTTTTTAATAATAGTAAAGGGGAAAATTCTGCTGTTCAAAAAAATCAATATCTTCGGCAGAAATTAAGATAAATTAGGTCAAAATTGATATTTGATATGACGTACTTTTCTTTCACAGGTTTTACATTACTGTATCACTTTTGGAAATTTGAATTCCAGTATTAGTGTCACCGCATTTTTTCTCTCCTACCCAAATTGCCAACTTTGAGCTCAATTATCTGAATTCCTGCAAGAGATATCAAAAAGTTTTCAAATGATAAATTATTCATCATGATATCATAAACGTTTTTTTAATGACACATTTCAGATATCTTTTGCAGGAATCGAGATCATTAAGCTCAAAGTGGATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>501 453 46</canonical_bands>
                <polymorphic_bands>547 453</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCTTCTCAGAAAAGTTTTACA</pcr_primer_p1>
		<pcr_primer_p2>TGTTAGAAGCCCATCCTATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCCTTCTCAGAAAAGTTTTACATTACTATATGTCTCCGGCAATTTCGATTTCGAATACCGTAAATGCTCTACTAGAAGCTCACCCTATATCACTCGAACTCAATTATTTTAGTTCCTAGGTGAGATATCAAAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTTCAGTTAAAATGTGTTGACATATTTCAGAAGAACCAAGATAATTGTACTCGAAGTGCATTTATAGGATGGGCTTCTAACA</canonical_amplicon>
		<polymorphic_amplicon>TTCCTTCTCAGAAAAGTTTTACATTACTATATGTCTCCGGCAATTTCGATTTCGAATACCGTAAATGCTCTACTAGAAGCTCACCCTATATCACTCGAACTCAATTATTTTAGTTCCTAGGTGAGATATCAAAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTTCAGTTAAAATGTGTTSACATATTTCAGAAGAACCAAGATAATTGTACTCGAAGTGCATTTATAGGATGGGCTTCTAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24877</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>747834</contig_pos>
        <strand></strand>
        <context>ttgtactcga[A/G]gtGCATTTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTAAAATGTGTTGACATATTTCAGAAGAACCAAGATAATTGTACTCGA</left_flank>
        <right_flank>GTGCATTTATAGGATGGGCTTCTAACAGAGAAAGTTTATGAAGAACCCCA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGATCTTCGGTCGCTCGCGATGTTTTGAGATAATGTCGCAAATATCATCGTAGATCTGGAACAAGGAAATATTAGATAGCTTGGTTAGGAGATAGGGTTTGAAAAGTGTGTATTTTCTATGTCACCGTGAAAAATGTTACATATAAATACATACTCTTCAATTTCACCAAACTGATCTCTGCTTCCGAAGAGGATATCAAACAGTAATTCATTAAAACGTTCTAATAACAACAAAAGAATTCGGTCAGTTTATACATTTGTAACATCTTGAGTTGTTCCTTCTCAGAAAAGTTTTACATTACTATATGTCTCCGGCAATTTCGATTTCGAATACCGTAAATGCTCTACTAGAAGCTCACCCTATATCACTCGAACTCAATTATTTTAGTTCCTAGGTGAGATATCAAAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTTCAGTTAAAATGTGTTGACATATTTCAGAAGAACCAAGATAATTGTACTCGAAGTGCATTTATAGGATGGGCTTCTAACAGAGAAAGTTTATGAAGAACCCCAAAACTCAAAATTGACCCAATTCATTTTCGCTCCTAAGAATATTCAACTGTGTTACATTAACAATTTTTTAATAATAGTAAAGGGGAAAATTCTGCTGTTCAAAAAAATCAATATCTTCGGCAGAAATTAAGATAAATTAGGTCAAAATTGATATTTGATATGACGTACTTTTCTTTCACAGGTTTTACATTACTGTATCACTTTTGGAAATTTGAATTCCAGTATTAGTGTCACCGCATTTTTTCTCTCCTACCCAAATTGCCAACTTTGAGCTCAATTATCTGAATTCCTGCAAGAGATATCAAAAAGTTTTCAAATGATAAATTATTCATCATGATATCATAAACGTTTTTTTAATGACACATTTCAGATATCTTTTGCAGGAATCGAGATCATTAAGCTCAAAGTGGATGGTTTAGAATAGCTTCTATCAGAGAAAATACGGTATGT</canonical>
            <polymorphic>ACGATCTTCGGTCGCTCGCGATGTTTTGAGATAATGTCGCAAATATCATCGTAGATCTGGAACAAGGAAATATTAGATAGCTTGGTTAGGAGATAGGGTTTGAAAAGTGTGTATTTTCTATGTCACCGTGAAAAATGTTACATATAAATACATACTCTTCAATTTCACCAAACTGATCTCTGCTTCCGAAGAGGATATCAAACAGTAATTCATTAAAACGTTCTAATAACAACAAAAGAATTCGGTCAGTTTATACATTTGTAACATCTTGAGTTGTTCCTTCTCAGAAAAGTTTTACATTACTATATGTCTCCGGCAATTTCGATTTCGAATACCGTAAATGCTCTACTAGAAGCTCACCCTATATCACTCGAACTCAATTATTTTAGTTCCTAGGTGAGATATCAAAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTTCAGTTAAAATGTGTTGACATATTTCAGAAGAACCAAGATAATTGTACTCGARGTGCATTTATAGGATGGGCTTCTAACAGAGAAAGTTTATGAAGAACCCCAAAACTCAAAATTGACCCAATTCATTTTCGCTCCTAAGAATATTCAACTGTGTTACATTAACAATTTTTTAATAATAGTAAAGGGGAAAATTCTGCTGTTCAAAAAAATCAATATCTTCGGCAGAAATTAAGATAAATTAGGTCAAAATTGATATTTGATATGACGTACTTTTCTTTCACAGGTTTTACATTACTGTATCACTTTTGGAAATTTGAATTCCAGTATTAGTGTCACCGCATTTTTTCTCTCCTACCCAAATTGCCAACTTTGAGCTCAATTATCTGAATTCCTGCAAGAGATATCAAAAAGTTTTCAAATGATAAATTATTCATCATGATATCATAAACGTTTTTTTAATGACACATTTCAGATATCTTTTGCAGGAATCGAGATCATTAAGCTCAAAGTGGATGGTTTAGAATAGCTTCTATCAGAGAAAATACGGTATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCTTCTCAGAAAAGTTTTACA</pcr_primer_p1>
		<pcr_primer_p2>TTTTGGGGTTCTTCATAAACT</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>TTCCTTCTCAGAAAAGTTTTACATTACTATATGTCTCCGGCAATTTCGATTTCGAATACCGTAAATGCTCTACTAGAAGCTCACCCTATATCACTCGAACTCAATTATTTTAGTTCCTAGGTGAGATATCAAAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTTCAGTTAAAATGTGTTGACATATTTCAGAAGAACCAAGATAATTGTACTCGAAGTGCATTTATAGGATGGGCTTCTAACAGAGAAAGTTTATGAAGAACCCCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTCCTTCTCAGAAAAGTTTTACATTACTATATGTCTCCGGCAATTTCGATTTCGAATACCGTAAATGCTCTACTAGAAGCTCACCCTATATCACTCGAACTCAATTATTTTAGTTCCTAGGTGAGATATCAAAAGTTTGTCAACTGATAAAATATTGGTGTAAATAAATTTTCAGTTAAAATGTGTTGACATATTTCAGAAGAACCAAGATAATTGTACTCGARGTGCATTTATAGGATGGGCTTCTAACAGAGAAAGTTTATGAAGAACCCCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24878</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>764195</contig_pos>
        <strand>+</strand>
        <context>AGAAAAAACC[A/G]AAAGGAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACCTGAAATGAAACTTTGTTAATGAATCAAAGAGAGAAAAGAAAAAACC</left_flank>
        <right_flank>AAAGGAAAATTGATACAAAACTGCTGAAAGTTCTGGGGAACAATGGTAAT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAATAATATTTAAATACAGGTAGCATTCACTCACTCATGATGTGGCAGAAGCGACTTCTTGTCAGATTCGCGTTATCTGAAAGCGGCATTGTGAACGCGTCGTAACAACGGGCGAATCCTGATAGGCTTTGCACGTATCGATAGTTCATTATTTCTTGGCGAATCGTTTGAAACTTCCTATGCGCTTTCGCCACAAACATTTGATTTGGGTGGTTTGACTCGCTTACTGTACAGATCACTCCATGGCTTCCGATGTTGAGCAGTTGCGGAAAAATGTAGCGATTTGGAATGTATTTTCGACGCAAGTCCATACGAAGTAAGGCATTGTCCCTGAAATTTTAACGGTGTCTGTTTTCTGTCGTATCGTTTCTCGCCAAAGTTGCTCATCAATTTTGAATAGAAAGAAAAAAAATTAGGAATTTTACCGGTTTTTTTTATCTTTGGTTTTACCTGAAATGAAACTTTGTTAATGAATCAAAGAGAGAAAAGAAAAAACCGAAAGGAAAATTGATACAAAACTGCTGAAAGTTCTGGGGAACAATGGTAATGATAAAACTAGAAGCGAGATAAATGCGTGATGCGCTCCACTCAATAACAGTTCTAACCCTCCGAAAAAAACAAAGAGTGTGAGGACAGGTAGTAACCAGCCAGTCACCCGTACTCACACCCACCAACAACTTACGCCACTCTGAGAGTGCAATAGAGCGCGTTTGGTCCCTTATAAAGCGCTGTTTTCTCAGAGTAGTCGATTCACATCACCTTATTAGGGTGCCACGTTGCGCATCTTTATACGTGTGCGGGTATGTAATGTAGAGGAATGCGAGGACCCCAGTCATTGTTGACCTTGTTTTGGTTACCAATCCAAATTTATTTATTTCACCGAATGGTATGAAACCCTTGATAAGTGGAAATTAGTATATTTGTGATCGGAATTCAATGAAATATTTTATGTATTCACAGTTCCGGTCAATACGATATACAAAAACATATCTTTTGGG</canonical>
            <polymorphic>AATAATAATATTTAAATACAGGTAGCATTCACTCACTCATGATGTGGCAGAAGCGACTTCTTGTCAGATTCGCGTTATCTGAAAGCGGCATTGTGAACGCGTCGTAACAACGGGCGAATCCTGATAGGCTTTGCACGTATCGATAGTTCATTATTTCTTGGCGAATCGTTTGAAACTTCCTATGCGCTTTCGCCACAAACATTTGATTTGGGTGGTTTGACTCGCTTACTGTACAGATCACTCCATGGCTTCCGATGTTGAGCAGTTGCGGAAAAATGTAGCGATTTGGAATGTATTTTCGACGCAAGTCCATACGAAGTAAGGCATTGTCCCTGAAATTTTAACGGTGTCTGTTTTCTGTCGTATCGTTTCTCGCCAAAGTTGCTCATCAATTTTGAATAGAAAGAAAAAAAATTAGGAATTTTACCGGTTTTTTTTATCTTTGGTTTTACCTGAAATGAAACTTTGTTAATGAATCAAAGAGAGAAAAGAAAAAACCRAAAGGAAAATTGATACAAAACTGCTGAAAGTTCTGGGGAACAATGGTAATGATAAAACTAGAAGCGAGATAAATGCGTGATGCGCTCCACTCAATAACAGTTCTAACCCTCCGAAAAAAACAAAGAGTGTGAGGACAGGTAGTAACCAGCCAGTCACCCGTACTCACACCCACCAACAACTTACGCCACTCTGAGAGTGCAATAGAGCGCGTTTGGTCCCTTATAAAGCGCTGTTTTCTCAGAGTAGTCGATTCACATCACCTTATTAGGGTGCCACGTTGCGCATCTTTATACGTGTGCGGGTATGTAATGTAGAGGAATGCGAGGACCCCAGTCATTGTTGACCTTGTTTTGGTTACCAATCCAAATTTATTTATTTCACCGAATGGTATGAAACCCTTGATAAGTGGAAATTAGTATATTTGTGATCGGAATTCAATGAAATATTTTATGTATTCACAGTTCCGGTCAATACGATATACAAAAACATATCTTTTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTACCTGAAATGAAACTTTG</pcr_primer_p1>
		<pcr_primer_p2>CTCAGAGTGGCGTAAGTTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTTACCTGAAATGAAACTTTGTTAATGAATCAAAGAGAGAAAAGAAAAAACCGAAAGGAAAATTGATACAAAACTGCTGAAAGTTCTGGGGAACAATGGTAATGATAAAACTAGAAGCGAGATAAATGCGTGATGCGCTCCACTCAATAACAGTTCTAACCCTCCGAAAAAAACAAAGAGTGTGAGGACAGGTAGTAACCAGCCAGTCACCCGTACTCACACCCACCAACAACTTACGCCACTCTGAG</canonical_amplicon>
		<polymorphic_amplicon>GTTTTACCTGAAATGAAACTTTGTTAATGAATCAAAGAGAGAAAAGAAAAAACCRAAAGGAAAATTGATACAAAACTGCTGAAAGTTCTGGGGAACAATGGTAATGATAAAACTAGAAGCGAGATAAATGCGTGATGCGCTCCACTCAATAACAGTTCTAACCCTCCGAAAAAAACAAAGAGTGTGAGGACAGGTAGTAACCAGCCAGTCACCCGTACTCACACCCACCAACAACTTACGCCACTCTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24879</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>764635</contig_pos>
        <strand>+</strand>
        <context>CGGAATTCAA[C/T]GAAATATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATGAAACCCTTGATAAGTGGAAATTAGTATATTTGTGATCGGAATTCAA</left_flank>
        <right_flank>GAAATATTTTATGTATTCACAGTTCCGGTCAATACGATATACAAAAACAT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTGGTTTTACCTGAAATGAAACTTTGTTAATGAATCAAAGAGAGAAAAGAAAAAACCGAAAGGAAAATTGATACAAAACTGCTGAAAGTTCTGGGGAACAATGGTAATGATAAAACTAGAAGCGAGATAAATGCGTGATGCGCTCCACTCAATAACAGTTCTAACCCTCCGAAAAAAACAAAGAGTGTGAGGACAGGTAGTAACCAGCCAGTCACCCGTACTCACACCCACCAACAACTTACGCCACTCTGAGAGTGCAATAGAGCGCGTTTGGTCCCTTATAAAGCGCTGTTTTCTCAGAGTAGTCGATTCACATCACCTTATTAGGGTGCCACGTTGCGCATCTTTATACGTGTGCGGGTATGTAATGTAGAGGAATGCGAGGACCCCAGTCATTGTTGACCTTGTTTTGGTTACCAATCCAAATTTATTTATTTCACCGAATGGTATGAAACCCTTGATAAGTGGAAATTAGTATATTTGTGATCGGAATTCAATGAAATATTTTATGTATTCACAGTTCCGGTCAATACGATATACAAAAACATATCTTTTGGGTTCATTTTGCTTATTTTCAGGAGTCTAGAGCACGGCTATCAAGTTTCCGATCACTTTGAAAATTTCGGGGTGGAAAACAGACGTAGATTAAAATTTTCAGTTTTCCAGCTATTTGCCGATTTTCGATCAAAAACATGTTTCACGATTTCAGTACAAAACTATCTTTTGAATCATCTTGATAGATAAGACTCCAAGTCAAAAGGTAACATCAAAAAGCAGGCGACCCACTTTTCCAATTGCAGCCCTTCTCGTTTTGAACTTATGGAATCAAGAAATTACCGTTCCGTTTGAACGATATCACTTGCATTGTTCTAGCCCTCTCCACTTTGCCTAAAATTTGATCAAAATTTTGCCAAAATTGGAAAAAAAACTCATGTATCAACCTCATATTTGGTTTCAATTTGACAATGAAATCTTCCAAATCTAGTAAACCTGTAAAA</canonical>
            <polymorphic>CTTTGGTTTTACCTGAAATGAAACTTTGTTAATGAATCAAAGAGAGAAAAGAAAAAACCGAAAGGAAAATTGATACAAAACTGCTGAAAGTTCTGGGGAACAATGGTAATGATAAAACTAGAAGCGAGATAAATGCGTGATGCGCTCCACTCAATAACAGTTCTAACCCTCCGAAAAAAACAAAGAGTGTGAGGACAGGTAGTAACCAGCCAGTCACCCGTACTCACACCCACCAACAACTTACGCCACTCTGAGAGTGCAATAGAGCGCGTTTGGTCCCTTATAAAGCGCTGTTTTCTCAGAGTAGTCGATTCACATCACCTTATTAGGGTGCCACGTTGCGCATCTTTATACGTGTGCGGGTATGTAATGTAGAGGAATGCGAGGACCCCAGTCATTGTTGACCTTGTTTTGGTTACCAATCCAAATTTATTTATTTCACCGAATGGTATGAAACCCTTGATAAGTGGAAATTAGTATATTTGTGATCGGAATTCAAYGAAATATTTTATGTATTCACAGTTCCGGTCAATACGATATACAAAAACATATCTTTTGGGTTCATTTTGCTTATTTTCAGGAGTCTAGAGCACGGCTATCAAGTTTCCGATCACTTTGAAAATTTCGGGGTGGAAAACAGACGTAGATTAAAATTTTCAGTTTTCCAGCTATTTGCCGATTTTCGATCAAAAACATGTTTCACGATTTCAGTACAAAACTATCTTTTGAATCATCTTGATAGATAAGACTCCAAGTCAAAAGGTAACATCAAAAAGCAGGCGACCCACTTTTCCAATTGCAGCCCTTCTCGTTTTGAACTTATGGAATCAAGAAATTACCGTTCCGTTTGAACGATATCACTTGCATTGTTCTAGCCCTCTCCACTTTGCCTAAAATTTGATCAAAATTTTGCCAAAATTGGAAAAAAAACTCATGTATCAACCTCATATTTGGTTTCAATTTGACAATGAAATCTTCCAAATCTAGTAAACCTGTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGGTATGAAACCCTTGATAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTGGAAGATTTCATTGTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>536</pcr_amplicon_size>
		<canonical_amplicon>ATGGTATGAAACCCTTGATAAGTGGAAATTAGTATATTTGTGATCGGAATTCAATGAAATATTTTATGTATTCACAGTTCCGGTCAATACGATATACAAAAACATATCTTTTGGGTTCATTTTGCTTATTTTCAGGAGTCTAGAGCACGGCTATCAAGTTTCCGATCACTTTGAAAATTTCGGGGTGGAAAACAGACGTAGATTAAAATTTTCAGTTTTCCAGCTATTTGCCGATTTTCGATCAAAAACATGTTTCACGATTTCAGTACAAAACTATCTTTTGAATCATCTTGATAGATAAGACTCCAAGTCAAAAGGTAACATCAAAAAGCAGGCGACCCACTTTTCCAATTGCAGCCCTTCTCGTTTTGAACTTATGGAATCAAGAAATTACCGTTCCGTTTGAACGATATCACTTGCATTGTTCTAGCCCTCTCCACTTTGCCTAAAATTTGATCAAAATTTTGCCAAAATTGGAAAAAAAACTCATGTATCAACCTCATATTTGGTTTCAATTTGACAATGAAATCTTCCAA</canonical_amplicon>
		<polymorphic_amplicon>ATGGTATGAAACCCTTGATAAGTGGAAATTAGTATATTTGTGATCGGAATTCAAYGAAATATTTTATGTATTCACAGTTCCGGTCAATACGATATACAAAAACATATCTTTTGGGTTCATTTTGCTTATTTTCAGGAGTCTAGAGCACGGCTATCAAGTTTCCGATCACTTTGAAAATTTCGGGGTGGAAAACAGACGTAGATTAAAATTTTCAGTTTTCCAGCTATTTGCCGATTTTCGATCAAAAACATGTTTCACGATTTCAGTACAAAACTATCTTTTGAATCATCTTGATAGATAAGACTCCAAGTCAAAAGGTAACATCAAAAAGCAGGCGACCCACTTTTCCAATTGCAGCCCTTCTCGTTTTGAACTTATGGAATCAAGAAATTACCGTTCCGTTTGAACGATATCACTTGCATTGTTCTAGCCCTCTCCACTTTGCCTAAAATTTGATCAAAATTTTGCCAAAATTGGAAAAAAAACTCATGTATCAACCTCATATTTGGTTTCAATTTGACAATGAAATCTTCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24880</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>765027</contig_pos>
        <strand></strand>
        <context>ccactttgcc[T/A]aaaatttgat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTCCGTTTGAACGATATCACTTGCATTGTTCTAGCCCTCTCCACTTTGCC</left_flank>
        <right_flank>AAAATTTGATCAAAATTTTGCCAAAATTGGAAAAAAAACTCATGTATCAA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCATTGTTGACCTTGTTTTGGTTACCAATCCAAATTTATTTATTTCACCGAATGGTATGAAACCCTTGATAAGTGGAAATTAGTATATTTGTGATCGGAATTCAATGAAATATTTTATGTATTCACAGTTCCGGTCAATACGATATACAAAAACATATCTTTTGGGTTCATTTTGCTTATTTTCAGGAGTCTAGAGCACGGCTATCAAGTTTCCGATCACTTTGAAAATTTCGGGGTGGAAAACAGACGTAGATTAAAATTTTCAGTTTTCCAGCTATTTGCCGATTTTCGATCAAAAACATGTTTCACGATTTCAGTACAAAACTATCTTTTGAATCATCTTGATAGATAAGACTCCAAGTCAAAAGGTAACATCAAAAAGCAGGCGACCCACTTTTCCAATTGCAGCCCTTCTCGTTTTGAACTTATGGAATCAAGAAATTACCGTTCCGTTTGAACGATATCACTTGCATTGTTCTAGCCCTCTCCACTTTGCCTAAAATTTGATCAAAATTTTGCCAAAATTGGAAAAAAAACTCATGTATCAACCTCATATTTGGTTTCAATTTGACAATGAAATCTTCCAAATCTAGTAAACCTGTAAAAATAATTCCCATTTAGCATGTTCAACATTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTGTTAAAATTTATCTATTTTTAAAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAAGGAAGAAAATTCAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCACCTGACAGCCTTTTTTTCAAGTCGCCGACAGTGGTTTTTTACGTTTTTTACCTGCCGAACATGAAATTGAAAAAAATCCGGAAATTTGCCACATAGGAAAGGCGCCCGCTGCCGTGGCCTAGGTTTCTCACTGAAAACCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTT</canonical>
            <polymorphic>AGTCATTGTTGACCTTGTTTTGGTTACCAATCCAAATTTATTTATTTCACCGAATGGTATGAAACCCTTGATAAGTGGAAATTAGTATATTTGTGATCGGAATTCAATGAAATATTTTATGTATTCACAGTTCCGGTCAATACGATATACAAAAACATATCTTTTGGGTTCATTTTGCTTATTTTCAGGAGTCTAGAGCACGGCTATCAAGTTTCCGATCACTTTGAAAATTTCGGGGTGGAAAACAGACGTAGATTAAAATTTTCAGTTTTCCAGCTATTTGCCGATTTTCGATCAAAAACATGTTTCACGATTTCAGTACAAAACTATCTTTTGAATCATCTTGATAGATAAGACTCCAAGTCAAAAGGTAACATCAAAAAGCAGGCGACCCACTTTTCCAATTGCAGCCCTTCTCGTTTTGAACTTATGGAATCAAGAAATTACCGTTCCGTTTGAACGATATCACTTGCATTGTTCTAGCCCTCTCCACTTTGCCWAAAATTTGATCAAAATTTTGCCAAAATTGGAAAAAAAACTCATGTATCAACCTCATATTTGGTTTCAATTTGACAATGAAATCTTCCAAATCTAGTAAACCTGTAAAAATAATTCCCATTTAGCATGTTCAACATTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTGTTAAAATTTATCTATTTTTAAAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAAGGAAGAAAATTCAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCACCTGACAGCCTTTTTTTCAAGTCGCCGACAGTGGTTTTTTACGTTTTTTACCTGCCGAACATGAAATTGAAAAAAATCCGGAAATTTGCCACATAGGAAAGGCGCCCGCTGCCGTGGCCTAGGTTTCTCACTGAAAACCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATATTTGTGATCGGAATTCAA</pcr_primer_p1>
		<pcr_primer_p2>TTGGAAGATTTCATTGTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>505</pcr_amplicon_size>
		<canonical_amplicon>GTATATTTGTGATCGGAATTCAATGAAATATTTTATGTATTCACAGTTCCGGTCAATACGATATACAAAAACATATCTTTTGGGTTCATTTTGCTTATTTTCAGGAGTCTAGAGCACGGCTATCAAGTTTCCGATCACTTTGAAAATTTCGGGGTGGAAAACAGACGTAGATTAAAATTTTCAGTTTTCCAGCTATTTGCCGATTTTCGATCAAAAACATGTTTCACGATTTCAGTACAAAACTATCTTTTGAATCATCTTGATAGATAAGACTCCAAGTCAAAAGGTAACATCAAAAAGCAGGCGACCCACTTTTCCAATTGCAGCCCTTCTCGTTTTGAACTTATGGAATCAAGAAATTACCGTTCCGTTTGAACGATATCACTTGCATTGTTCTAGCCCTCTCCACTTTGCCTAAAATTTGATCAAAATTTTGCCAAAATTGGAAAAAAAACTCATGTATCAACCTCATATTTGGTTTCAATTTGACAATGAAATCTTCCAA</canonical_amplicon>
		<polymorphic_amplicon>GTATATTTGTGATCGGAATTCAATGAAATATTTTATGTATTCACAGTTCCGGTCAATACGATATACAAAAACATATCTTTTGGGTTCATTTTGCTTATTTTCAGGAGTCTAGAGCACGGCTATCAAGTTTCCGATCACTTTGAAAATTTCGGGGTGGAAAACAGACGTAGATTAAAATTTTCAGTTTTCCAGCTATTTGCCGATTTTCGATCAAAAACATGTTTCACGATTTCAGTACAAAACTATCTTTTGAATCATCTTGATAGATAAGACTCCAAGTCAAAAGGTAACATCAAAAAGCAGGCGACCCACTTTTCCAATTGCAGCCCTTCTCGTTTTGAACTTATGGAATCAAGAAATTACCGTTCCGTTTGAACGATATCACTTGCATTGTTCTAGCCCTCTCCACTTTGCCWAAAATTTGATCAAAATTTTGCCAAAATTGGAAAAAAAACTCATGTATCAACCTCATATTTGGTTTCAATTTGACAATGAAATCTTCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24881</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>881830</contig_pos>
        <strand>+</strand>
        <context>GGATCTAAGA[G/T]CTTCACATTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTACCAAACGAAAACTATGCAGTTCTACCTACAACTTGGGGATCTAAGA</left_flank>
        <right_flank>CTTCACATTCTCGCTGCCACCAGCGGTCTTGTCTGGCACCTATCAGTACG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATTTGTTTTGAGAGGTATATTTCATTCTGATGAAATTCAAAAAAGGTTGTCAACTACGCTATTGAAAATATACTCTTGTACAGTTGGCCTGGAAAATTTCCGTTTAATTCAACAGCATTAACAATATTGTTTCAACAATTAAAGTAGGTTATTTTCTACAAAAAATAATGGAACAAACTTCTAACCAGTGCTGTATGCTGAGATGCCAATTTTTAAGAATATTGATGGGTTCCGATAGAGACCGTATTTTTTTTCTGGAACCGAATAGTTTTTAAATTTGTAAAAAGAAATTTTAACACTTTCTTAGTTCGAAATCAGCTTATTCTGCATTTTTGAGCAATGACGCACAATTGTTCGAAAAATCAAGTTGATTAAAATTATTCATTAATCATGTCTTCCATCTACTTTAATTACCTTTATCATGAAATGCCAAGATATGACATCAAATTTACCAAACGAAAACTATGCAGTTCTACCTACAACTTGGGGATCTAAGAGCTTCACATTCTCGCTGCCACCAGCGGTCTTGTCTGGCACCTATCAGTACGAGCAGATTCTCGTTCTTCCAACTACAGAGGTATTTTTTCTTTTTTCACAATATTCCTGAGGACCTTTTCCAAATCTTTCAGGGAACCACTCGTGTTAACGTTGTCGAAATCGGTAACGGTCAATCCTTCTACAGTTTCAATGTCACTTATGGAAACGCCCCAGCCGTTTACATTGGAACTCGCACCCCAGATAAACGTCCACGTACTTATCATGTGACTTCTGATAAAGATGTTCTGGTTAGTTTTCTCTTCCACTAGGAGTTTTTATTACATGGAGAGCATTTTATTGCTCAATTAGAGATCAACATCATTTCGTATTCAGATTGTTGCCGGAGTCACATGCGCTGGAGCCGATATAACCACGTGCGATCATGCGGCTTATATGCCTCATCCGCCAGCAGCTAGCGGTAAGAGCTTTGCAGATTGATCAACTTTCCGCCCTCACAAATC</canonical>
            <polymorphic>TGATTTGTTTTGAGAGGTATATTTCATTCTGATGAAATTCAAAAAAGGTTGTCAACTACGCTATTGAAAATATACTCTTGTACAGTTGGCCTGGAAAATTTCCGTTTAATTCAACAGCATTAACAATATTGTTTCAACAATTAAAGTAGGTTATTTTCTACAAAAAATAATGGAACAAACTTCTAACCAGTGCTGTATGCTGAGATGCCAATTTTTAAGAATATTGATGGGTTCCGATAGAGACCGTATTTTTTTTCTGGAACCGAATAGTTTTTAAATTTGTAAAAAGAAATTTTAACACTTTCTTAGTTCGAAATCAGCTTATTCTGCATTTTTGAGCAATGACGCACAATTGTTCGAAAAATCAAGTTGATTAAAATTATTCATTAATCATGTCTTCCATCTACTTTAATTACCTTTATCATGAAATGCCAAGATATGACATCAAATTTACCAAACGAAAACTATGCAGTTCTACCTACAACTTGGGGATCTAAGAKCTTCACATTCTCGCTGCCACCAGCGGTCTTGTCTGGCACCTATCAGTACGAGCAGATTCTCGTTCTTCCAACTACAGAGGTATTTTTTCTTTTTTCACAATATTCCTGAGGACCTTTTCCAAATCTTTCAGGGAACCACTCGTGTTAACGTTGTCGAAATCGGTAACGGTCAATCCTTCTACAGTTTCAATGTCACTTATGGAAACGCCCCAGCCGTTTACATTGGAACTCGCACCCCAGATAAACGTCCACGTACTTATCATGTGACTTCTGATAAAGATGTTCTGGTTAGTTTTCTCTTCCACTAGGAGTTTTTATTACATGGAGAGCATTTTATTGCTCAATTAGAGATCAACATCATTTCGTATTCAGATTGTTGCCGGAGTCACATGCGCTGGAGCCGATATAACCACGTGCGATCATGCGGCTTATATGCCTCATCCGCCAGCAGCTAGCGGTAAGAGCTTTGCAGATTGATCAACTTTCCGCCCTCACAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>451 320 180 36 13</canonical_bands>
                <polymorphic_bands>631 320 36 13</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>231 213 187 180 89 36 27 24 13</canonical_bands>
                <polymorphic_bands>393 231 187 89 36 27 24 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAATTTACCAAACGAAAACTA</pcr_primer_p1>
		<pcr_primer_p2>ACATTGAAACTGTAGAAGGATTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCAAATTTACCAAACGAAAACTATGCAGTTCTACCTACAACTTGGGGATCTAAGAGCTTCACATTCTCGCTGCCACCAGCGGTCTTGTCTGGCACCTATCAGTACGAGCAGATTCTCGTTCTTCCAACTACAGAGGTATTTTTTCTTTTTTCACAATATTCCTGAGGACCTTTTCCAAATCTTTCAGGGAACCACTCGTGTTAACGTTGTCGAAATCGGTAACGGTCAATCCTTCTACAGTTTCAATGT</canonical_amplicon>
		<polymorphic_amplicon>TCAAATTTACCAAACGAAAACTATGCAGTTCTACCTACAACTTGGGGATCTAAGAKCTTCACATTCTCGCTGCCACCAGCGGTCTTGTCTGGCACCTATCAGTACGAGCAGATTCTCGTTCTTCCAACTACAGAGGTATTTTTTCTTTTTTCACAATATTCCTGAGGACCTTTTCCAAATCTTTCAGGGAACCACTCGTGTTAACGTTGTCGAAATCGGTAACGGTCAATCCTTCTACAGTTTCAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24882</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>882283</contig_pos>
        <strand>+</strand>
        <context>CGCCAGCAGC[C/T]AGCGGTAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATATAACCACGTGCGATCATGCGGCTTATATGCCTCATCCGCCAGCAGC</left_flank>
        <right_flank>AGCGGTAAGAGCTTTGCAGATTGATCAACTTTCCGCCCTCACAAATCTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAACGAAAACTATGCAGTTCTACCTACAACTTGGGGATCTAAGAGCTTCACATTCTCGCTGCCACCAGCGGTCTTGTCTGGCACCTATCAGTACGAGCAGATTCTCGTTCTTCCAACTACAGAGGTATTTTTTCTTTTTTCACAATATTCCTGAGGACCTTTTCCAAATCTTTCAGGGAACCACTCGTGTTAACGTTGTCGAAATCGGTAACGGTCAATCCTTCTACAGTTTCAATGTCACTTATGGAAACGCCCCAGCCGTTTACATTGGAACTCGCACCCCAGATAAACGTCCACGTACTTATCATGTGACTTCTGATAAAGATGTTCTGGTTAGTTTTCTCTTCCACTAGGAGTTTTTATTACATGGAGAGCATTTTATTGCTCAATTAGAGATCAACATCATTTCGTATTCAGATTGTTGCCGGAGTCACATGCGCTGGAGCCGATATAACCACGTGCGATCATGCGGCTTATATGCCTCATCCGCCAGCAGCTAGCGGTAAGAGCTTTGCAGATTGATCAACTTTCCGCCCTCACAAATCTCATTGCTATACAAGGATAATCTAGGAGTTTTTTATGCATATCATGAATAGTAAAATGAACCTGGATTGATGAAAAAACACAAAGAAAATGTGATCAATTAAGATTGCTATGCATACGACTACTACGACGATGATCATGTCAGCTACCTGCCAACAACCACACAATTTTTCACCGACATTCCTGGAACATGCTTGGTTGGACAAAATGTAAAATTTGAAATAGAAAAAAACAGACAAAAAATGAGTAATTCCAGATCACAAGCATACTGAATGATGGGGTTGCCAAAACAATAACTATCAAGCCACAAATGGAATCTCCACTTTGGACGATCCAAACTACAAAACCTGATCAGACCGGAGTTGCTTTTCACAACGGGTAAGACACTTTATGAAAAAATTATTTTTCGAGAGACGAAATTGCGACTATATAAGATTACGTTTCAGAGGATCCAA</canonical>
            <polymorphic>CCAAACGAAAACTATGCAGTTCTACCTACAACTTGGGGATCTAAGAGCTTCACATTCTCGCTGCCACCAGCGGTCTTGTCTGGCACCTATCAGTACGAGCAGATTCTCGTTCTTCCAACTACAGAGGTATTTTTTCTTTTTTCACAATATTCCTGAGGACCTTTTCCAAATCTTTCAGGGAACCACTCGTGTTAACGTTGTCGAAATCGGTAACGGTCAATCCTTCTACAGTTTCAATGTCACTTATGGAAACGCCCCAGCCGTTTACATTGGAACTCGCACCCCAGATAAACGTCCACGTACTTATCATGTGACTTCTGATAAAGATGTTCTGGTTAGTTTTCTCTTCCACTAGGAGTTTTTATTACATGGAGAGCATTTTATTGCTCAATTAGAGATCAACATCATTTCGTATTCAGATTGTTGCCGGAGTCACATGCGCTGGAGCCGATATAACCACGTGCGATCATGCGGCTTATATGCCTCATCCGCCAGCAGCYAGCGGTAAGAGCTTTGCAGATTGATCAACTTTCCGCCCTCACAAATCTCATTGCTATACAAGGATAATCTAGGAGTTTTTTATGCATATCATGAATAGTAAAATGAACCTGGATTGATGAAAAAACACAAAGAAAATGTGATCAATTAAGATTGCTATGCATACGACTACTACGACGATGATCATGTCAGCTACCTGCCAACAACCACACAATTTTTCACCGACATTCCTGGAACATGCTTGGTTGGACAAAATGTAAAATTTGAAATAGAAAAAAACAGACAAAAAATGAGTAATTCCAGATCACAAGCATACTGAATGATGGGGTTGCCAAAACAATAACTATCAAGCCACAAATGGAATCTCCACTTTGGACGATCCAAACTACAAAACCTGATCAGACCGGAGTTGCTTTTCACAACGGGTAAGACACTTTATGAAAAAATTATTTTTCGAGAGACGAAATTGCGACTATATAAGATTACGTTTCAGAGGATCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>451 310 179 47 13</canonical_bands>
                <polymorphic_bands>464 310 179 47</polymorphic_bands>
            </assay>
            <assay>
                <site>GCTAGC</site>
                <isoschizomers>
                    <enzyme>AsuNHI</enzyme>
                    <enzyme>BmtI</enzyme>
                    <enzyme>NheI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>431 352 147 70</canonical_bands>
                <polymorphic_bands>431 352 217</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>213 187 179 159 151 47 27 24 13</canonical_bands>
                <polymorphic_bands>213 187 179 159 151 47 37 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGATCAACATCATTTCGTATTC</pcr_primer_p1>
		<pcr_primer_p2>GATCACATTTTCTTTGTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAGATCAACATCATTTCGTATTCAGATTGTTGCCGGAGTCACATGCGCTGGAGCCGATATAACCACGTGCGATCATGCGGCTTATATGCCTCATCCGCCAGCAGCTAGCGGTAAGAGCTTTGCAGATTGATCAACTTTCCGCCCTCACAAATCTCATTGCTATACAAGGATAATCTAGGAGTTTTTTATGCATATCATGAATAGTAAAATGAACCTGGATTGATGAAAAAACACAAAGAAAATGTGATC</canonical_amplicon>
		<polymorphic_amplicon>GAGATCAACATCATTTCGTATTCAGATTGTTGCCGGAGTCACATGCGCTGGAGCCGATATAACCACGTGCGATCATGCGGCTTATATGCCTCATCCGCCAGCAGCYAGCGGTAAGAGCTTTGCAGATTGATCAACTTTCCGCCCTCACAAATCTCATTGCTATACAAGGATAATCTAGGAGTTTTTTATGCATATCATGAATAGTAAAATGAACCTGGATTGATGAAAAAACACAAAGAAAATGTGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24883</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>928593</contig_pos>
        <strand>+</strand>
        <context>ATTGGAGTTA[C/G]GCCCCTAGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTACAGAATTTTTCGAATTTTCTAATTTTTCTCTCTGAAAATTGGAGTTA</left_flank>
        <right_flank>GCCCCTAGTCACAGTTAGGATCAGAAGTGAGTAGGAACTCAGCTAAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTCGTCGAGCACCAACGGATCGGCAGATCTTCCAGAGAAGCTCAAGTTGCACAGAGCCACTCTTCCAAGTATCACCACTACAGCCAGTGAGTCTGAAACGGGTTAACAGGGATGTTCGGTTTTAATTTCAAAAATACCGAAAATCTTTACTATTTTAGAAATGAAGTTCCAACACTTTGAAATCAAAATCCCGATCAAATAATTACTGGATTTTTTTTTCGGAATTCGAGATTTTTTGGACTATAATTTGTCAAAAGAGCGAGAAAACATTTTCTTGCGGGTCTCGAACGAAACTCCTGTCACTATTTTTTGGCGTTTATGAAATCTGTTTGTCACATTTTTGCGTTTCTGGGATGTGAAAAAGGTTTCCGAAATATCAAATTTTTGAAAATCGGAGTTTTCGACACTCCGAATAAGACATTCCGAACATCCCTGCGAGATTGGAAATCTACAGAATTTTTCGAATTTTCTAATTTTTCTCTCTGAAAATTGGAGTTAGGCCCCTAGTCACAGTTAGGATCAGAAGTGAGTAGGAACTCAGCTAAAAATCTGCGGAAACAGCCAATTCACCCAATACTCGTGTGTGAATGGGAGTCCACGTCATCACATGCGTGGCCCCCCGATTACCAGAGAGAAAATTATGATATCCACATTTTATGTGATTGCCTTTCCATTCCACACCCACAAACCCTTTTTTTTATTCCTCATCGAGAGCGCCATTCGTTTCTCAACGAACCCAAAGCCTGGTGACATATTTCGACAAAAATAAAAGCAGCGAAAAAATGCTATACTGTTTCAAAGGGTTTAGCCTACGATCTCGTATCGCAACATGGCTACCAGCGTGTCTACGTCGACAAAGTAAGCTCTCAAAATTAGTGTTTGTCATGTGTTCATAAGTTTACTTGCGAGGTTTGATTAGTGCTTTTCGACATACACACACATAGGTGAGAACCGACAGTTTAGTTGTACTTGTTAACATTTAACAATGTCGCTTTTATC</canonical>
            <polymorphic>CCTCGTCGAGCACCAACGGATCGGCAGATCTTCCAGAGAAGCTCAAGTTGCACAGAGCCACTCTTCCAAGTATCACCACTACAGCCAGTGAGTCTGAAACGGGTTAACAGGGATGTTCGGTTTTAATTTCAAAAATACCGAAAATCTTTACTATTTTAGAAATGAAGTTCCAACACTTTGAAATCAAAATCCCGATCAAATAATTACTGGATTTTTTTTTCGGAATTCGAGATTTTTTGGACTATAATTTGTCAAAAGAGCGAGAAAACATTTTCTTGCGGGTCTCGAACGAAACTCCTGTCACTATTTTTTGGCGTTTATGAAATCTGTTTGTCACATTTTTGCGTTTCTGGGATGTGAAAAAGGTTTCCGAAATATCAAATTTTTGAAAATCGGAGTTTTCGACACTCCGAATAAGACATTCCGAACATCCCTGCGAGATTGGAAATCTACAGAATTTTTCGAATTTTCTAATTTTTCTCTCTGAAAATTGGAGTTASGCCCCTAGTCACAGTTAGGATCAGAAGTGAGTAGGAACTCAGCTAAAAATCTGCGGAAACAGCCAATTCACCCAATACTCGTGTGTGAATGGGAGTCCACGTCATCACATGCGTGGCCCCCCGATTACCAGAGAGAAAATTATGATATCCACATTTTATGTGATTGCCTTTCCATTCCACACCCACAAACCCTTTTTTTTATTCCTCATCGAGAGCGCCATTCGTTTCTCAACGAACCCAAAGCCTGGTGACATATTTCGACAAAAATAAAAGCAGCGAAAAAATGCTATACTGTTTCAAAGGGTTTAGCCTACGATCTCGTATCGCAACATGGCTACCAGCGTGTCTACGTCGACAAAGTAAGCTCTCAAAATTAGTGTTTGTCATGTGTTCATAAGTTTACTTGCGAGGTTTGATTAGTGCTTTTCGACATACACACACATAGGTGAGAACCGACAGTTTAGTTGTACTTGTTAACATTTAACAATGTCGCTTTTATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 385 115</canonical_bands>
                <polymorphic_bands>615 385</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 383 115</canonical_bands>
                <polymorphic_bands>617 383</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 384 115</canonical_bands>
                <polymorphic_bands>616 384</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>417 136 127 66 54 41 41 30 27 25 20 16</canonical_bands>
                <polymorphic_bands>458 136 127 66 54 41 30 27 25 20 16</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATTGGAAATCTACAGAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAGGCAATCACATAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>AGATTGGAAATCTACAGAATTTTTCGAATTTTCTAATTTTTCTCTCTGAAAATTGGAGTTAGGCCCCTAGTCACAGTTAGGATCAGAAGTGAGTAGGAACTCAGCTAAAAATCTGCGGAAACAGCCAATTCACCCAATACTCGTGTGTGAATGGGAGTCCACGTCATCACATGCGTGGCCCCCCGATTACCAGAGAGAAAATTATGATATCCACATTTTATGTGATTGCCTTTC</canonical_amplicon>
		<polymorphic_amplicon>AGATTGGAAATCTACAGAATTTTTCGAATTTTCTAATTTTTCTCTCTGAAAATTGGAGTTASGCCCCTAGTCACAGTTAGGATCAGAAGTGAGTAGGAACTCAGCTAAAAATCTGCGGAAACAGCCAATTCACCCAATACTCGTGTGTGAATGGGAGTCCACGTCATCACATGCGTGGCCCCCCGATTACCAGAGAGAAAATTATGATATCCACATTTTATGTGATTGCCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24884</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>977104</contig_pos>
        <strand></strand>
        <context>ATAAATCGGT[T/C]ATTGTTTCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTGAATAAATGTTCAATAATCCGTTTCTTTCATAAAGGGATAAATCGGT</left_flank>
        <right_flank>ATTGTTTCAGAAAAACTATACAATAGACGTTTGATTTCCCAAGTTATAAT</right_flank>
        <qual_score>33</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACTGATAATAACGAACGAATAATTGCACGTTTGAGTGTTCGAGAAAACCCATTTTGAAGGTTAGTATTATTAAAGGGAGAGCAAGTTATTAATATTATTATTATTGTCAACTCGAGTAACGGATCATCCAGCTCGGTGTACAGGACAACAAATTCTGTAGAGACTGTCATGTGATGGGAAGCAATCAGCATTCTCGGGACATCGGCTTGGCGTCCAAATATCTTGATCAAGCCCACACGCAATTACCATATTGGATTGATCTCTGATGGCAGAGTCCTTGGAGCAGAATCGAAGAACTGTAAGATAAGTGTTTATTATCCCATACATCTCTTGTTTTTTGTTCCTTGTCGTCTATATTTTTTCACATGTACTGCAATCCGCAATAATCTTGTTTCAGCCGCGCGGATTATTATCTTTTTTGCACCATTAGTCACATTGAAATAACACATTGAATAAATGTTCAATAATCCGTTTCTTTCATAAAGGGATAAATCGGTTATTGTTTCAGAAAAACTATACAATAGACGTTTGATTTCCCAAGTTATAATTGGAAACAGATGTGAAAAACAAAATCCTGTATTTAACAAATTCTAAGCTCGACTATACGAAAAAAGAGGCACGAGGTTAAGCTGAGCAGTCTGGATTAAAATCAATTGGGGATGTTTTTTCAACTTACTTGATTCTTTCTTAGCTGGTCGGGGCCTTGGGGTATGATAGAAGGCGTTGGGGTCGTAAGCGGTAGTAGTTGGACGAGTAGCACGGGTTGGGGTTGTGACAGGGATCTGGAAAAATGTGAATCAGTTTTGTTTCAAAACTGGAAATATATTTCTTATCTACAGTATCGGTTTATTAAATTCACAAAAAAAACAGGTCTTTCAGTTGGTTTCCGGCCATTTTGACTATTTTCAGGAGTCTGGATCTGGGTTGCCAAGTTTTCAACCACTTTGAAAATTTTAGCGGATGTTAAGCATACCCAGATAGAAAACATTGCATTCACA</canonical>
            <polymorphic>ACACTGATAATAACGAACGAATAATTGCACGTTTGAGTGTTCGAGAAAACCCATTTTGAAGGTTAGTATTATTAAAGGGAGAGCAAGTTATTAATATTATTATTATTGTCAACTCGAGTAACGGATCATCCAGCTCGGTGTACAGGACAACAAATTCTGTAGAGACTGTCATGTGATGGGAAGCAATCAGCATTCTCGGGACATCGGCTTGGCGTCCAAATATCTTGATCAAGCCCACACGCAATTACCATATTGGATTGATCTCTGATGGCAGAGTCCTTGGAGCAGAATCGAAGAACTGTAAGATAAGTGTTTATTATCCCATACATCTCTTGTTTTTTGTTCCTTGTCGTCTATATTTTTTCACATGTACTGCAATCCGCAATAATCTTGTTTCAGCCGCGCGGATTATTATCTTTTTTGCACCATTAGTCACATTGAAATAACACATTGAATAAATGTTCAATAATCCGTTTCTTTCATAAAGGGATAAATCGGTYATTGTTTCAGAAAAACTATACAATAGACGTTTGATTTCCCAAGTTATAATTGGAAACAGATGTGAAAAACAAAATCCTGTATTTAACAAATTCTAAGCTCGACTATACGAAAAAAGAGGCACGAGGTTAAGCTGAGCAGTCTGGATTAAAATCAATTGGGGATGTTTTTTCAACTTACTTGATTCTTTCTTAGCTGGTCGGGGCCTTGGGGTATGATAGAAGGCGTTGGGGTCGTAAGCGGTAGTAGTTGGACGAGTAGCACGGGTTGGGGTTGTGACAGGGATCTGGAAAAATGTGAATCAGTTTTGTTTCAAAACTGGAAATATATTTCTTATCTACAGTATCGGTTTATTAAATTCACAAAAAAAACAGGTCTTTCAGTTGGTTTCCGGCCATTTTGACTATTTTCAGGAGTCTGGATCTGGGTTGCCAAGTTTTCAACCACTTTGAAAATTTTAGCGGATGTTAAGCATACCCAGATAGAAAACATTGCATTCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCCCATACATCTCTTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCACATCTGTTTCCAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATCCCATACATCTCTTGTTTTTTGTTCCTTGTCGTCTATATTTTTTCACATGTACTGCAATCCGCAATAATCTTGTTTCAGCCGCGCGGATTATTATCTTTTTTGCACCATTAGTCACATTGAAATAACACATTGAATAAATGTTCAATAATCCGTTTCTTTCATAAAGGGATAAATCGGTTATTGTTTCAGAAAAACTATACAATAGACGTTTGATTTCCCAAGTTATAATTGGAAACAGATGTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TATCCCATACATCTCTTGTTTTTTGTTCCTTGTCGTCTATATTTTTTCACATGTACTGCAATCCGCAATAATCTTGTTTCAGCCGCGCGGATTATTATCTTTTTTGCACCATTAGTCACATTGAAATAACACATTGAATAAATGTTCAATAATCCGTTTCTTTCATAAAGGGATAAATCGGTYATTGTTTCAGAAAAACTATACAATAGACGTTTGATTTCCCAAGTTATAATTGGAAACAGATGTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24885</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1003995</contig_pos>
        <strand>+</strand>
        <context>GAACAATTCA[G/T]TWAAACTGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAGAACAGAAAAACCATGAAACAAAAAGCGGCAAAATTCCGAACAATTCA</left_flank>
        <right_flank>TTAAACTGAGAGGTCCCGAGGACGCTCCGACAAAATTTGTTTATAGATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAGAAAAACGGGAGTAGGAGAAAACGAAGACGGAGTTCACTTTCAATTATTTTCTTCTTGCATAGAGCTTCGCTCCATCTAGTAAATTATTATAATGCCACCATCTGGCCTATCTAGTTGCTTTTGTTCCGGGGGATAAGTTTGAATATACACACTCTTTTTTAATTAAGCCAAAACACATCACTTATTTTTGCGAATTTCTGGGCAACAAAAAAACATACAAACGTTGTTATCTCAATTTAAATGCCTAATAGTTTTTCTTTACACTTCAAATGACCCCATCGTGTCGAAAGATTTTTTTCGCATCTTAGAAAAGTCCCAATAATGTGACAGCTCATTGCAACTCAATGTTACACCAAGAATAGGTTTTTTCTTGTGGAATGGAGTTAAAAAGAAGAGGTTGAACTTAAAAAACATGCAAATTCAAGAATAGTATGCGTATTTTTCAGAACAGAAAAACCATGAAACAAAAAGCGGCAAAATTCCGAACAATTCAGTTAAACTGAGAGGTCCCGAGGACGCTCCGACAAAATTTGTTTATAGATTAGGCCCGGATGAATGAGAAATCAACGGTCAGTGGGAGGAAAAAAGGGGAGGGGGATAAAAAGAAAAGATAAATCAATTTTTTTCTTATTGAAAACAAATTGGATTCCTCTTCCGAGAGAAAAAGTGCAAGATGAAGAGAGATCTCATCCTTTACACTTCATGCACCAAAATGTCGGCAAGTTCAGATGTCAAAAGGTGAGAACAATTTGTCATTCGGGAGATTATTAACAAGGTGTCAAAGAGAAAAAAGAGATAAAGAAAATTGGAAAATTTGGTCCTTGTGTTTTGAGGTATGTTGAACAGGATAAAGATTTCTTTTTAAATCCAATTGAAAATTGATGAAATTCCGATTGTTAAAAATTTTTGTTAACGGGCAAAAAAACATATACGTTCTCATCAACTTCAATTTTTTTGGATTTTTTCAGCTGCTTCTTGTCACTATTTCACTTTT</canonical>
            <polymorphic>GAAAAGAAAAACGGGAGTAGGAGAAAACGAAGACGGAGTTCACTTTCAATTATTTTCTTCTTGCATAGAGCTTCGCTCCATCTAGTAAATTATTATAATGCCACCATCTGGCCTATCTAGTTGCTTTTGTTCCGGGGGATAAGTTTGAATATACACACTCTTTTTTAATTAAGCCAAAACACATCACTTATTTTTGCGAATTTCTGGGCAACAAAAAAACATACAAACGTTGTTATCTCAATTTAAATGCCTAATAGTTTTTCTTTACACTTCAAATGACCCCATCGTGTCGAAAGATTTTTTTCGCATCTTAGAAAAGTCCCAATAATGTGACAGCTCATTGCAACTCAATGTTACACCAAGAATAGGTTTTTTCTTGTGGAATGGAGTTAAAAAGAAGAGGTTGAACTTAAAAAACATGCAAATTCAAGAATAGTATGCGTATTTTTCAGAACAGAAAAACCATGAAACAAAAAGCGGCAAAATTCCGAACAATTCAKTTAAACTGAGAGGTCCCGAGGACGCTCCGACAAAATTTGTTTATAGATTAGGCCCGGATGAATGAGAAATCAACGGTCAGTGGGAGGAAAAAAGGGGAGGGGGATAAAAAGAAAAGATAAATCAATTTTTTTCTTATTGAAAACAAATTGGATTCCTCTTCCGAGAGAAAAAGTGCAAGATGAAGAGAGATCTCATCCTTTACACTTCATGCACCAAAATGTCGGCAAGTTCAGATGTCAAAAGGTGAGAACAATTTGTCATTCGGGAGATTATTAACAAGGTGTCAAAGAGAAAAAAGAGATAAAGAAAATTGGAAAATTTGGTCCTTGTGTTTTGAGGTATGTTGAACAGGATAAAGATTTCTTTTTAAATCCAATTGAAAATTGATGAAATTCCGATTGTTAAAAATTTTTGTTAACGGGCAAAAAAACATATACGTTCTCATCAACTTCAATTTTTTTGGATTTTTTCAGCTGCTTCTTGTCACTATTTCACTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTATGCGTATTTTTCAGAACAG</pcr_primer_p1>
		<pcr_primer_p2>CTTCATCTTGCACTTTTTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGTATGCGTATTTTTCAGAACAGAAAAACCATGAAACAAAAAGCGGCAAAATTCCGAACAATTCAGTTAAACTGAGAGGTCCCGAGGACGCTCCGACAAAATTTGTTTATAGATTAGGCCCGGATGAATGAGAAATCAACGGTCAGTGGGAGGAAAAAAGGGGAGGGGGATAAAAAGAAAAGATAAATCAATTTTTTTCTTATTGAAAACAAATTGGATTCCTCTTCCGAGAGAAAAAGTGCAAGATGAAG</canonical_amplicon>
		<polymorphic_amplicon>AGTATGCGTATTTTTCAGAACAGAAAAACCATGAAACAAAAAGCGGCAAAATTCCGAACAATTCAKTTAAACTGAGAGGTCCCGAGGACGCTCCGACAAAATTTGTTTATAGATTAGGCCCGGATGAATGAGAAATCAACGGTCAGTGGGAGGAAAAAAGGGGAGGGGGATAAAAAGAAAAGATAAATCAATTTTTTTCTTATTGAAAACAAATTGGATTCCTCTTCCGAGAGAAAAAGTGCAAGATGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24886</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1003997</contig_pos>
        <strand>+</strand>
        <context>ACAATTCAKT[A/T]AAACTGAGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAACAGAAAAACCATGAAACAAAAAGCGGCAAAATTCCGAACAATTCAGT</left_flank>
        <right_flank>AAACTGAGAGGTCCCGAGGACGCTCCGACAAAATTTGTTTATAGATTAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGAAAAACGGGAGTAGGAGAAAACGAAGACGGAGTTCACTTTCAATTATTTTCTTCTTGCATAGAGCTTCGCTCCATCTAGTAAATTATTATAATGCCACCATCTGGCCTATCTAGTTGCTTTTGTTCCGGGGGATAAGTTTGAATATACACACTCTTTTTTAATTAAGCCAAAACACATCACTTATTTTTGCGAATTTCTGGGCAACAAAAAAACATACAAACGTTGTTATCTCAATTTAAATGCCTAATAGTTTTTCTTTACACTTCAAATGACCCCATCGTGTCGAAAGATTTTTTTCGCATCTTAGAAAAGTCCCAATAATGTGACAGCTCATTGCAACTCAATGTTACACCAAGAATAGGTTTTTTCTTGTGGAATGGAGTTAAAAAGAAGAGGTTGAACTTAAAAAACATGCAAATTCAAGAATAGTATGCGTATTTTTCAGAACAGAAAAACCATGAAACAAAAAGCGGCAAAATTCCGAACAATTCAGTTAAACTGAGAGGTCCCGAGGACGCTCCGACAAAATTTGTTTATAGATTAGGCCCGGATGAATGAGAAATCAACGGTCAGTGGGAGGAAAAAAGGGGAGGGGGATAAAAAGAAAAGATAAATCAATTTTTTTCTTATTGAAAACAAATTGGATTCCTCTTCCGAGAGAAAAAGTGCAAGATGAAGAGAGATCTCATCCTTTACACTTCATGCACCAAAATGTCGGCAAGTTCAGATGTCAAAAGGTGAGAACAATTTGTCATTCGGGAGATTATTAACAAGGTGTCAAAGAGAAAAAAGAGATAAAGAAAATTGGAAAATTTGGTCCTTGTGTTTTGAGGTATGTTGAACAGGATAAAGATTTCTTTTTAAATCCAATTGAAAATTGATGAAATTCCGATTGTTAAAAATTTTTGTTAACGGGCAAAAAAACATATACGTTCTCATCAACTTCAATTTTTTTGGATTTTTTCAGCTGCTTCTTGTCACTATTTCACTTTTCA</canonical>
            <polymorphic>AAAGAAAAACGGGAGTAGGAGAAAACGAAGACGGAGTTCACTTTCAATTATTTTCTTCTTGCATAGAGCTTCGCTCCATCTAGTAAATTATTATAATGCCACCATCTGGCCTATCTAGTTGCTTTTGTTCCGGGGGATAAGTTTGAATATACACACTCTTTTTTAATTAAGCCAAAACACATCACTTATTTTTGCGAATTTCTGGGCAACAAAAAAACATACAAACGTTGTTATCTCAATTTAAATGCCTAATAGTTTTTCTTTACACTTCAAATGACCCCATCGTGTCGAAAGATTTTTTTCGCATCTTAGAAAAGTCCCAATAATGTGACAGCTCATTGCAACTCAATGTTACACCAAGAATAGGTTTTTTCTTGTGGAATGGAGTTAAAAAGAAGAGGTTGAACTTAAAAAACATGCAAATTCAAGAATAGTATGCGTATTTTTCAGAACAGAAAAACCATGAAACAAAAAGCGGCAAAATTCCGAACAATTCAGTWAAACTGAGAGGTCCCGAGGACGCTCCGACAAAATTTGTTTATAGATTAGGCCCGGATGAATGAGAAATCAACGGTCAGTGGGAGGAAAAAAGGGGAGGGGGATAAAAAGAAAAGATAAATCAATTTTTTTCTTATTGAAAACAAATTGGATTCCTCTTCCGAGAGAAAAAGTGCAAGATGAAGAGAGATCTCATCCTTTACACTTCATGCACCAAAATGTCGGCAAGTTCAGATGTCAAAAGGTGAGAACAATTTGTCATTCGGGAGATTATTAACAAGGTGTCAAAGAGAAAAAAGAGATAAAGAAAATTGGAAAATTTGGTCCTTGTGTTTTGAGGTATGTTGAACAGGATAAAGATTTCTTTTTAAATCCAATTGAAAATTGATGAAATTCCGATTGTTAAAAATTTTTGTTAACGGGCAAAAAAACATATACGTTCTCATCAACTTCAATTTTTTTGGATTTTTTCAGCTGCTTCTTGTCACTATTTCACTTTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>273 163 147 94 91 86 74 35 20 13 4</canonical_bands>
                <polymorphic_bands>364 163 147 94 86 74 35 20 13 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTATGCGTATTTTTCAGAACAG</pcr_primer_p1>
		<pcr_primer_p2>CTTCATCTTGCACTTTTTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGTATGCGTATTTTTCAGAACAGAAAAACCATGAAACAAAAAGCGGCAAAATTCCGAACAATTCAGTTAAACTGAGAGGTCCCGAGGACGCTCCGACAAAATTTGTTTATAGATTAGGCCCGGATGAATGAGAAATCAACGGTCAGTGGGAGGAAAAAAGGGGAGGGGGATAAAAAGAAAAGATAAATCAATTTTTTTCTTATTGAAAACAAATTGGATTCCTCTTCCGAGAGAAAAAGTGCAAGATGAAG</canonical_amplicon>
		<polymorphic_amplicon>AGTATGCGTATTTTTCAGAACAGAAAAACCATGAAACAAAAAGCGGCAAAATTCCGAACAATTCAGTWAAACTGAGAGGTCCCGAGGACGCTCCGACAAAATTTGTTTATAGATTAGGCCCGGATGAATGAGAAATCAACGGTCAGTGGGAGGAAAAAAGGGGAGGGGGATAAAAAGAAAAGATAAATCAATTTTTTTCTTATTGAAAACAAATTGGATTCCTCTTCCGAGAGAAAAAGTGCAAGATGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24887</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1006255</contig_pos>
        <strand>+</strand>
        <context>AATTAAAAAA[A/T]TTTTTCCGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTCATAGATCGAGTACGGAAGATAGGCCATGTTTAGAAAAATTAAAAAA</left_flank>
        <right_flank>TTTTTCCGGGTTCCCTTTGGTTCACTAAATATCTTTTATAACCTGGATTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTTTCTCTATCTGCGTTTCTTATCAGAAGTACAACGCTCATATTACAAAAAATACCAATTATCATATATCACTTCAACGAAAAAGTCGGTTTCAATCAGATAACACCTCTCAGGTCAACGCACGGACTCCCAGCCAATAATTGTGAATAATTAATGGTAGCCAATGATTTGAGGCGAGGGATAATGGGCTCCAACTCAGCACACCTGACACCCTCTCGATTCACCCACATGATAAATCGTGTGGGTCCTTGGGATGCGCGTTGACCCCCCAATCGAAGAAAAATCCTTTTTGTTGAAAGTGTAACGAAAAAGCGATTGAGAGCTAATTGCTTGGTCGCGGTTGCTCATTCCGAGGAAATTCGCTTTTTGAACGCGTTTATTGGATTTTTTCATGACCTTATTCGAAGGCTCATGCTTTTTTAACCAGGAAAACAAAAATCACCTAATTGTCATAGATCGAGTACGGAAGATAGGCCATGTTTAGAAAAATTAAAAAATTTTTTCCGGGTTCCCTTTGGTTCACTAAATATCTTTTATAACCTGGATTGGATTTTGTTCCGGGTTTTGACTTCAACGGCATTTTTTCGGGATAACATAAACTTTGTAAAAAAGAAAATAAAAAACAAGAGATCTTCTCTAAGATTTCTTAGAACATCTTATTAACCAGTATAAATTTCTCGATGCACTCAAAAACCACAATTGTCAAAACACCAATTAAATGGGAATGGAGATGTGCCTGGAGCAGTGAGAAGTGCACACGGAAGTTAGGAATATGGACGCCTACTAGTAGAAGAATCACCCACCGGGTAATTTGATTATCATAGTCTCATGGTCGGCAAAAAAATCGAACAAACGGAGAAAAGAGAAAAATGTCGCAGAGTTATGAGAAACAAATTGTGAGAAAGACTCTGTGACAAACTTGTCTGTTGGGACCAAACGTGTTCGAAATTTGAATCAAAAAGAAAAAGAAGAAAAAACGAAACGAAAGACGAGTCGAG</canonical>
            <polymorphic>AACTTTCTCTATCTGCGTTTCTTATCAGAAGTACAACGCTCATATTACAAAAAATACCAATTATCATATATCACTTCAACGAAAAAGTCGGTTTCAATCAGATAACACCTCTCAGGTCAACGCACGGACTCCCAGCCAATAATTGTGAATAATTAATGGTAGCCAATGATTTGAGGCGAGGGATAATGGGCTCCAACTCAGCACACCTGACACCCTCTCGATTCACCCACATGATAAATCGTGTGGGTCCTTGGGATGCGCGTTGACCCCCCAATCGAAGAAAAATCCTTTTTGTTGAAAGTGTAACGAAAAAGCGATTGAGAGCTAATTGCTTGGTCGCGGTTGCTCATTCCGAGGAAATTCGCTTTTTGAACGCGTTTATTGGATTTTTTCATGACCTTATTCGAAGGCTCATGCTTTTTTAACCAGGAAAACAAAAATCACCTAATTGTCATAGATCGAGTACGGAAGATAGGCCATGTTTAGAAAAATTAAAAAAWTTTTTCCGGGTTCCCTTTGGTTCACTAAATATCTTTTATAACCTGGATTGGATTTTGTTCCGGGTTTTGACTTCAACGGCATTTTTTCGGGATAACATAAACTTTGTAAAAAAGAAAATAAAAAACAAGAGATCTTCTCTAAGATTTCTTAGAACATCTTATTAACCAGTATAAATTTCTCGATGCACTCAAAAACCACAATTGTCAAAACACCAATTAAATGGGAATGGAGATGTGCCTGGAGCAGTGAGAAGTGCACACGGAAGTTAGGAATATGGACGCCTACTAGTAGAAGAATCACCCACCGGGTAATTTGATTATCATAGTCTCATGGTCGGCAAAAAAATCGAACAAACGGAGAAAAGAGAAAAATGTCGCAGAGTTATGAGAAACAAATTGTGAGAAAGACTCTGTGACAAACTTGTCTGTTGGGACCAAACGTGTTCGAAATTTGAATCAAAAAGAAAAAGAAGAAAAAACGAAACGAAAGACGAGTCGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>358 275 176 139 52</canonical_bands>
                <polymorphic_bands>358 315 275 52</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>176 176 96 88 84 82 58 54 52 43 32 26 15 10 8</canonical_bands>
                <polymorphic_bands>184 176 96 88 84 82 58 54 52 43 32 26 15 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACCTAATTGTCATAGATCGAGTA</pcr_primer_p1>
		<pcr_primer_p2>AGTGCATCGAGAAATTTATACTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CACCTAATTGTCATAGATCGAGTACGGAAGATAGGCCATGTTTAGAAAAATTAAAAAATTTTTTCCGGGTTCCCTTTGGTTCACTAAATATCTTTTATAACCTGGATTGGATTTTGTTCCGGGTTTTGACTTCAACGGCATTTTTTCGGGATAACATAAACTTTGTAAAAAAGAAAATAAAAAACAAGAGATCTTCTCTAAGATTTCTTAGAACATCTTATTAACCAGTATAAATTTCTCGATGCACT</canonical_amplicon>
		<polymorphic_amplicon>CACCTAATTGTCATAGATCGAGTACGGAAGATAGGCCATGTTTAGAAAAATTAAAAAAWTTTTTCCGGGTTCCCTTTGGTTCACTAAATATCTTTTATAACCTGGATTGGATTTTGTTCCGGGTTTTGACTTCAACGGCATTTTTTCGGGATAACATAAACTTTGTAAAAAAGAAAATAAAAAACAAGAGATCTTCTCTAAGATTTCTTAGAACATCTTATTAACCAGTATAAATTTCTCGATGCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24888</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1011826</contig_pos>
        <strand></strand>
        <context>ttttaaatgt[G/C]ttgcataatg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TTTATCATAATATCATTAGTGGTTTGTCAGTTGGATAATTTTTTAAATGT</left_flank>
        <right_flank>TTGCATAATGCCTCTTGATTTACTCGAACTTGAGAGTGTGAGAGCCCTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATTTCTGTATTTGTATGTGAAACCGATCGAGCAACAGAGTGCAACAATGTTGGTAGCACCGAAATCTCGTGATATGAGGGCAGAGCAGATTAGGATGTTTGCCCTGAATGAAATTGTGAAAGCCAATTCTCATGTAAGTGGAAAAATTCCATATTCTATGACTCCGAATAATTCCGAGTTATCCGAGTAACAATAGTTTTTCGAAATAAATGTTTTTGTTAATGAAGTTTCGAATTTTTAAGGTACAATACCGACAAGAGTTTCTAGTTTTATTTATTTTTTACTTATTTTTGAAATTATCAACTCTTGAGAATGTATTACAGAATCGTTCGATTGACCAGAACATTCTAGAATCCCTGTGATAGAGGGCTCCTTAACTTCTGACTTTGAGACAAATTTGCTTGGTTTCTGACAAAAATATTTAAAAAATTGTCAACTGATAAATTTTTTATCATAATATCATTAGTGGTTTGTCAGTTGGATAATTTTTTAAATGTGTTGCATAATGCCTCTTGATTTACTCGAACTTGAGAGTGTGAGAGCCCTTTTATTACAGGTTTTACGGTATATTAAATATGAAAGGATTTTTTTTCGGTATTCTATATCTTTTAGCATGACATTGATAGATAAAATCAGTAGTATTTTGACAGTTACTGTAAATGTTACAGACTAAATTTACATGGACCAAAAACAAGCTAACATGGAATGACTCCCAAGTGTTACCCTTGAAAAAAATTGAGACCTAGATGATTGGAAAGAGCGTAAAAGATTTTAAAAAAATGAATAGACAATTTATTGTTCTTTTGAAAAAAAAAAATTTTGATTTTTTTCCCATTGATTGGATTATTGATTTTTTGAAAAAACCGAAGAATTTTTCAATATCTCAAAAATCCCAAGTTAACTTTTTTTCTTATTATGACCATTGAATTCAGCACGTTTGATTTACTATAGAAACATATCAACACCCCGGGGGAAATCATGCTCACACAAGTTATGCC</canonical>
            <polymorphic>TTATTTCTGTATTTGTATGTGAAACCGATCGAGCAACAGAGTGCAACAATGTTGGTAGCACCGAAATCTCGTGATATGAGGGCAGAGCAGATTAGGATGTTTGCCCTGAATGAAATTGTGAAAGCCAATTCTCATGTAAGTGGAAAAATTCCATATTCTATGACTCCGAATAATTCCGAGTTATCCGAGTAACAATAGTTTTTCGAAATAAATGTTTTTGTTAATGAAGTTTCGAATTTTTAAGGTACAATACCGACAAGAGTTTCTAGTTTTATTTATTTTTTACTTATTTTTGAAATTATCAACTCTTGAGAATGTATTACAGAATCGTTCGATTGACCAGAACATTCTAGAATCCCTGTGATAGAGGGCTCCTTAACTTCTGACTTTGAGACAAATTTGCTTGGTTTCTGACAAAAATATTTAAAAAATTGTCAACTGATAAATTTTTTATCATAATATCATTAGTGGTTTGTCAGTTGGATAATTTTTTAAATGTSTTGCATAATGCCTCTTGATTTACTCGAACTTGAGAGTGTGAGAGCCCTTTTATTACAGGTTTTACGGTATATTAAATATGAAAGGATTTTTTTTCGGTATTCTATATCTTTTAGCATGACATTGATAGATAAAATCAGTAGTATTTTGACAGTTACTGTAAATGTTACAGACTAAATTTACATGGACCAAAAACAAGCTAACATGGAATGACTCCCAAGTGTTACCCTTGAAAAAAATTGAGACCTAGATGATTGGAAAGAGCGTAAAAGATTTTAAAAAAATGAATAGACAATTTATTGTTCTTTTGAAAAAAAAAAATTTTGATTTTTTTCCCATTGATTGGATTATTGATTTTTTGAAAAAACCGAAGAATTTTTCAATATCTCAAAAATCCCAAGTTAACTTTTTTTCTTATTATGACCATTGAATTCAGCACGTTTGATTTACTATAGAAACATATCAACACCCCGGGGGAAATCATGCTCACACAAGTTATGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>221 215 181 107 47 38 30 30 22 22 21 21 17 13 11 2 2</canonical_bands>
                <polymorphic_bands>221 215 181 107 68 47 30 22 22 21 21 17 13 11 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCGATTGACCAGAACATT</pcr_primer_p1>
		<pcr_primer_p2>GCTAAAAGATATAGAATACCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>286</pcr_amplicon_size>
		<canonical_amplicon>GTTCGATTGACCAGAACATTCTAGAATCCCTGTGATAGAGGGCTCCTTAACTTCTGACTTTGAGACAAATTTGCTTGGTTTCTGACAAAAATATTTAAAAAATTGTCAACTGATAAATTTTTTATCATAATATCATTAGTGGTTTGTCAGTTGGATAATTTTTTAAATGTGTTGCATAATGCCTCTTGATTTACTCGAACTTGAGAGTGTGAGAGCCCTTTTATTACAGGTTTTACGGTATATTAAATATGAAAGGATTTTTTTTCGGTATTCTATATCTTTTAGC</canonical_amplicon>
		<polymorphic_amplicon>GTTCGATTGACCAGAACATTCTAGAATCCCTGTGATAGAGGGCTCCTTAACTTCTGACTTTGAGACAAATTTGCTTGGTTTCTGACAAAAATATTTAAAAAATTGTCAACTGATAAATTTTTTATCATAATATCATTAGTGGTTTGTCAGTTGGATAATTTTTTAAATGTSTTGCATAATGCCTCTTGATTTACTCGAACTTGAGAGTGTGAGAGCCCTTTTATTACAGGTTTTACGGTATATTAAATATGAAAGGATTTTTTTTCGGTATTCTATATCTTTTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24889</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1088625</contig_pos>
        <strand>+</strand>
        <context>ATTCGATAAC[C/T]TTTTTTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTTATTTTTACTATCGAGCGCCCGGTTTACTTTCGCAAATTCGATAAC</left_flank>
        <right_flank>TTTTTTTTTCATCCCTCCCATTTTCAAGGTTTCCTGAATTTTCCAATCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGGAAGGCGACCAAAAAGAAGGTTGTGATAGAAGGATTGAAATTTTGCAAATAATTATACTCCCTCGGTTGGGTCATGTGGTATACAAAACGGAATTCATTCGTATTATACGTATTTTCAACGATTTGGAGAGCTGTGTCTTTTCGTGAATTCATTTTCGTTTTTTTTTGTTTGAGGTTACAGTTCCACTAAATGGAAGCAAAATTTTGAATATTTCTATTCTAAATTGGGTACATTCATTCATTCATATGTCCGTGTTGCGTTTTCATCAAATTGCATGGTTCTTTATTTTTCTGCGTTTTCAGACTCGATTTTTTAATTTCTAAACTAGCAGGAAATCGATGGTTATCATCGAGTTTGATTCCCTTCTTCGTTATCGCTTTTTTGAAAGATTTTGGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCTATCTTATTTTTACTATCGAGCGCCCGGTTTACTTTCGCAAATTCGATAACTTTTTTTTTTCATCCCTCCCATTTTCAAGGTTTCCTGAATTTTCCAATCATCGAACGATCGGCTTTTGTGGATCTCAAAGATTTCATTCCCTTGCTCTTCTTTACGCGATAGGACAACCATTCCTTCATTTCATATATTATGCTTGAAGAAGAGAGAAAGCAATAAGAGGAAGTAATACTGAATCAGGCAGCAGACTCCATTAAAAGGCTCGGTGGCAGATAATGAGCGTTCAGTTGAAAATAGTAATTAGTGGCAGATAATCCAGGTAGAAGGCGACCAAGGAGCACATTGAAGGGAGGATTAAGATTTTGCGAGAAATTCGACTACCTCAGTTGGGTAACGTGGTATACGAAGTTGAATTCATTTATAAATATTTTCACAGAAAGATTTCAACAAAATTGGACCACATAGTCGAATCCGCGTTTTTTAATGGAAAATTTCGTGAAGTTTATTTAATTTCCGGAAAATTGTTGCAAAACCTATTGCAAAATTTTATGAAG</canonical>
            <polymorphic>GGTGGAAGGCGACCAAAAAGAAGGTTGTGATAGAAGGATTGAAATTTTGCAAATAATTATACTCCCTCGGTTGGGTCATGTGGTATACAAAACGGAATTCATTCGTATTATACGTATTTTCAACGATTTGGAGAGCTGTGTCTTTTCGTGAATTCATTTTCGTTTTTTTTTGTTTGAGGTTACAGTTCCACTAAATGGAAGCAAAATTTTGAATATTTCTATTCTAAATTGGGTACATTCATTCATTCATATGTCCGTGTTGCGTTTTCATCAAATTGCATGGTTCTTTATTTTTCTGCGTTTTCAGACTCGATTTTTTAATTTCTAAACTAGCAGGAAATCGATGGTTATCATCGAGTTTGATTCCCTTCTTCGTTATCGCTTTTTTGAAAGATTTTGGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCTATCTTATTTTTACTATCGAGCGCCCGGTTTACTTTCGCAAATTCGATAACYTTTTTTTTTCATCCCTCCCATTTTCAAGGTTTCCTGAATTTTCCAATCATCGAACGATCGGCTTTTGTGGATCTCAAAGATTTCATTCCCTTGCTCTTCTTTACGCGATAGGACAACCATTCCTTCATTTCATATATTATGCTTGAAGAAGAGAGAAAGCAATAAGAGGAAGTAATACTGAATCAGGCAGCAGACTCCATTAAAAGGCTCGGTGGCAGATAATGAGCGTTCAGTTGAAAATAGTAATTAGTGGCAGATAATCCAGGTAGAAGGCGACCAAGGAGCACATTGAAGGGAGGATTAAGATTTTGCGAGAAATTCGACTACCTCAGTTGGGTAACGTGGTATACGAAGTTGAATTCATTTATAAATATTTTCACAGAAAGATTTCAACAAAATTGGACCACATAGTCGAATCCGCGTTTTTTAATGGAAAATTTCGTGAAGTTTATTTAATTTCCGGAAAATTGTTGCAAAACCTATTGCAAAATTTTATGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACAACGCTTAATGTCACTCTG</pcr_primer_p1>
		<pcr_primer_p2>CTTTCTCTCTTCTTCAAGCATAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCTATCTTATTTTTACTATCGAGCGCCCGGTTTACTTTCGCAAATTCGATAACTTTTTTTTTTCATCCCTCCCATTTTCAAGGTTTCCTGAATTTTCCAATCATCGAACGATCGGCTTTTGTGGATCTCAAAGATTTCATTCCCTTGCTCTTCTTTACGCGATAGGACAACCATTCCTTCATTTCATATATTATGCTTGAAGAAGAGAGAAAG</canonical_amplicon>
		<polymorphic_amplicon>TACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCTATCTTATTTTTACTATCGAGCGCCCGGTTTACTTTCGCAAATTCGATAACYTTTTTTTTTCATCCCTCCCATTTTCAAGGTTTCCTGAATTTTCCAATCATCGAACGATCGGCTTTTGTGGATCTCAAAGATTTCATTCCCTTGCTCTTCTTTACGCGATAGGACAACCATTCCTTCATTTCATATATTATGCTTGAAGAAGAGAGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24890</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1090303</contig_pos>
        <strand>+</strand>
        <context>GAAAAGGCGT[C/T]AAAAATATTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACTTGATTATAAAATGGAGAAATAGTGAAGATCAATTGGGAAAAGGCGT</left_flank>
        <right_flank>AAAAATATTAAATTCATCGATGTTCAAATACACGGAGGAGTTCAAAATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAGCCACGATGAAACTTCTGAATTCCAAACTCACTGCTCACGCCGAGGATCAGCTTGTTTGCGCTCAACCCTTTCCCATCTCTCTGAAATCTTTCCCAATTTTAAAGTCCGAATTATAGATGTGAACGCGAAACTGTGGGATTCGAGTGTTTTCGGTGCAATGGATATGAACAAAATTATGGAGTGTGTCCAAAAAACAAGAATGTTGCAAATTGATGCAGAGTTTATCAATCGAGAAATGATACATTTGATGGAAAAAGTCAAATGCACCAGGAGATTATATTGCAAGGCGGAAAACACGATGGGATGTATTCTTAACGGGACACTTCAATGCTCAGATTGGATTGTTGCAGAAAACTTTCGATGGTTTGACGCTGAACAATTCCAAGATCTTCACTGTCAATTAATGCGCCTAGTGAAGACACGTATTACAACGCGAAACGTCGAAGACTTGATTATAAAATGGAGAAATAGTGAAGATCAATTGGGAAAAGGCGTCAAAAATATTAAATTCATCGATGTTCAAATACACGGAGGAGTTCAAAATTTTGATTTTTCAAGGGTTGGAGCGCAACCCAAAGGAAGTGTTGAGAGACCTAATGAATTCACGTAAGATCTATCAAATCTTTTTACTCAATTTTAAGATATTGTATTTCAGTGAGTTCAATTGTGATTATGACTTCACTAACGCTTTTGATATCATTCACCCAGATGGTACCCTAGCATCACTGAAGGTAGTTGAAGTACTTGACCGCGTCATGTTTGTTGTGTGGAACCGGTAAATTGGTATATTGTAATATTGTAGCTTATTGTACATTATTGTGACTCAATTTCAAATCTTTTTAGACCTAAATTACCACTTTGAATGTTGTTTAATGTAAACTATAATCCTCTTTAGTGTGTTTTATCAAAATAATTTAAAAATAATTCCTGAAATTTTGTTTCAGCTTCTTTCTTTCGTCTTTTGGATTCGTTTTTGCTTATTTTTTCTTGTGAATT</canonical>
            <polymorphic>TAAGCCACGATGAAACTTCTGAATTCCAAACTCACTGCTCACGCCGAGGATCAGCTTGTTTGCGCTCAACCCTTTCCCATCTCTCTGAAATCTTTCCCAATTTTAAAGTCCGAATTATAGATGTGAACGCGAAACTGTGGGATTCGAGTGTTTTCGGTGCAATGGATATGAACAAAATTATGGAGTGTGTCCAAAAAACAAGAATGTTGCAAATTGATGCAGAGTTTATCAATCGAGAAATGATACATTTGATGGAAAAAGTCAAATGCACCAGGAGATTATATTGCAAGGCGGAAAACACGATGGGATGTATTCTTAACGGGACACTTCAATGCTCAGATTGGATTGTTGCAGAAAACTTTCGATGGTTTGACGCTGAACAATTCCAAGATCTTCACTGTCAATTAATGCGCCTAGTGAAGACACGTATTACAACGCGAAACGTCGAAGACTTGATTATAAAATGGAGAAATAGTGAAGATCAATTGGGAAAAGGCGTYAAAAATATTAAATTCATCGATGTTCAAATACACGGAGGAGTTCAAAATTTTGATTTTTCAAGGGTTGGAGCGCAACCCAAAGGAAGTGTTGAGAGACCTAATGAATTCACGTAAGATCTATCAAATCTTTTTACTCAATTTTAAGATATTGTATTTCAGTGAGTTCAATTGTGATTATGACTTCACTAACGCTTTTGATATCATTCACCCAGATGGTACCCTAGCATCACTGAAGGTAGTTGAAGTACTTGACCGCGTCATGTTTGTTGTGTGGAACCGGTAAATTGGTATATTGTAATATTGTAGCTTATTGTACATTATTGTGACTCAATTTCAAATCTTTTTAGACCTAAATTACCACTTTGAATGTTGTTTAATGTAAACTATAATCCTCTTTAGTGTGTTTTATCAAAATAATTTAAAAATAATTCCTGAAATTTTGTTTCAGCTTCTTTCTTTCGTCTTTTGGATTCGTTTTTGCTTATTTTTTCTTGTGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAACGTCGAAGACTTGATTAT</pcr_primer_p1>
		<pcr_primer_p2>GTGAAGTCATAATCACAATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAACGTCGAAGACTTGATTATAAAATGGAGAAATAGTGAAGATCAATTGGGAAAAGGCGTCAAAAATATTAAATTCATCGATGTTCAAATACACGGAGGAGTTCAAAATTTTGATTTTTCAAGGGTTGGAGCGCAACCCAAAGGAAGTGTTGAGAGACCTAATGAATTCACGTAAGATCTATCAAATCTTTTTACTCAATTTTAAGATATTGTATTTCAGTGAGTTCAATTGTGATTATGACTTCAC</canonical_amplicon>
		<polymorphic_amplicon>GAAACGTCGAAGACTTGATTATAAAATGGAGAAATAGTGAAGATCAATTGGGAAAAGGCGTYAAAAATATTAAATTCATCGATGTTCAAATACACGGAGGAGTTCAAAATTTTGATTTTTCAAGGGTTGGAGCGCAACCCAAAGGAAGTGTTGAGAGACCTAATGAATTCACGTAAGATCTATCAAATCTTTTTACTCAATTTTAAGATATTGTATTTCAGTGAGTTCAATTGTGATTATGACTTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24891</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1090619</contig_pos>
        <strand>+</strand>
        <context>GCTTATTGTA[C/G]ATTATTGTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTTGTGTGGAACCGGTAAATTGGTATATTGTAATATTGTAGCTTATTGTA</left_flank>
        <right_flank>ATTATTGTGACTCAATTTCAAATCTTTTTAGACCTAAATTACCACTTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACGGGACACTTCAATGCTCAGATTGGATTGTTGCAGAAAACTTTCGATGGTTTGACGCTGAACAATTCCAAGATCTTCACTGTCAATTAATGCGCCTAGTGAAGACACGTATTACAACGCGAAACGTCGAAGACTTGATTATAAAATGGAGAAATAGTGAAGATCAATTGGGAAAAGGCGTCAAAAATATTAAATTCATCGATGTTCAAATACACGGAGGAGTTCAAAATTTTGATTTTTCAAGGGTTGGAGCGCAACCCAAAGGAAGTGTTGAGAGACCTAATGAATTCACGTAAGATCTATCAAATCTTTTTACTCAATTTTAAGATATTGTATTTCAGTGAGTTCAATTGTGATTATGACTTCACTAACGCTTTTGATATCATTCACCCAGATGGTACCCTAGCATCACTGAAGGTAGTTGAAGTACTTGACCGCGTCATGTTTGTTGTGTGGAACCGGTAAATTGGTATATTGTAATATTGTAGCTTATTGTACATTATTGTGACTCAATTTCAAATCTTTTTAGACCTAAATTACCACTTTGAATGTTGTTTAATGTAAACTATAATCCTCTTTAGTGTGTTTTATCAAAATAATTTAAAAATAATTCCTGAAATTTTGTTTCAGCTTCTTTCTTTCGTCTTTTGGATTCGTTTTTGCTTATTTTTTCTTGTGAATTTTCAAAATTTTTATTCCCCTCATCGCCGCCATTTTCTACACTTTTTGGCTGAAATTGTATTTAACAATATTTGCTCTGTTTGAATAAACCGTGATTAATTACGCTCAATGACACGTATTATAGAATTTCAGCTTCTAATTTGCTGGACGGAGCTAACAAATTTTTTTTCACAAATTCTCTTGCTCTCGCCATTTTTCGAGGTTTTGAGAAAAACTAAAAATTGTGGAGAAAAACGGCTGATGCCATTAGATTCAGCATCCCAAAAAACCTATAGGTTCCCAGTAACAAATGCCAGTCAAGTGTTTTAGGACTACAG</canonical>
            <polymorphic>TAACGGGACACTTCAATGCTCAGATTGGATTGTTGCAGAAAACTTTCGATGGTTTGACGCTGAACAATTCCAAGATCTTCACTGTCAATTAATGCGCCTAGTGAAGACACGTATTACAACGCGAAACGTCGAAGACTTGATTATAAAATGGAGAAATAGTGAAGATCAATTGGGAAAAGGCGTCAAAAATATTAAATTCATCGATGTTCAAATACACGGAGGAGTTCAAAATTTTGATTTTTCAAGGGTTGGAGCGCAACCCAAAGGAAGTGTTGAGAGACCTAATGAATTCACGTAAGATCTATCAAATCTTTTTACTCAATTTTAAGATATTGTATTTCAGTGAGTTCAATTGTGATTATGACTTCACTAACGCTTTTGATATCATTCACCCAGATGGTACCCTAGCATCACTGAAGGTAGTTGAAGTACTTGACCGCGTCATGTTTGTTGTGTGGAACCGGTAAATTGGTATATTGTAATATTGTAGCTTATTGTASATTATTGTGACTCAATTTCAAATCTTTTTAGACCTAAATTACCACTTTGAATGTTGTTTAATGTAAACTATAATCCTCTTTAGTGTGTTTTATCAAAATAATTTAAAAATAATTCCTGAAATTTTGTTTCAGCTTCTTTCTTTCGTCTTTTGGATTCGTTTTTGCTTATTTTTTCTTGTGAATTTTCAAAATTTTTATTCCCCTCATCGCCGCCATTTTCTACACTTTTTGGCTGAAATTGTATTTAACAATATTTGCTCTGTTTGAATAAACCGTGATTAATTACGCTCAATGACACGTATTATAGAATTTCAGCTTCTAATTTGCTGGACGGAGCTAACAAATTTTTTTTCACAAATTCTCTTGCTCTCGCCATTTTTCGAGGTTTTGAGAAAAACTAAAAATTGTGGAGAAAAACGGCTGATGCCATTAGATTCAGCATCCCAAAAAACCTATAGGTTCCCAGTAACAAATGCCAGTCAAGTGTTTTAGGACTACAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGTACA</site>
                <isoschizomers>
                    <enzyme>AauI</enzyme>
                    <enzyme>Bsp1407I</enzyme>
                    <enzyme>BsrGI</enzyme>
                    <enzyme>SspBI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 401 68 29</canonical_bands>
                <polymorphic_bands>570 401 29</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>496 381 110 13</canonical_bands>
                <polymorphic_bands>606 381 13</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>504 428 68</canonical_bands>
                <polymorphic_bands>572 428</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAATTGTGATTATGACTTCAC</pcr_primer_p1>
		<pcr_primer_p2>TTTGATAAAACACACTAAAGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCAATTGTGATTATGACTTCACTAACGCTTTTGATATCATTCACCCAGATGGTACCCTAGCATCACTGAAGGTAGTTGAAGTACTTGACCGCGTCATGTTTGTTGTGTGGAACCGGTAAATTGGTATATTGTAATATTGTAGCTTATTGTACATTATTGTGACTCAATTTCAAATCTTTTTAGACCTAAATTACCACTTTGAATGTTGTTTAATGTAAACTATAATCCTCTTTAGTGTGTTTTATCAAA</canonical_amplicon>
		<polymorphic_amplicon>TTCAATTGTGATTATGACTTCACTAACGCTTTTGATATCATTCACCCAGATGGTACCCTAGCATCACTGAAGGTAGTTGAAGTACTTGACCGCGTCATGTTTGTTGTGTGGAACCGGTAAATTGGTATATTGTAATATTGTAGCTTATTGTASATTATTGTGACTCAATTTCAAATCTTTTTAGACCTAAATTACCACTTTGAATGTTGTTTAATGTAAACTATAATCCTCTTTAGTGTGTTTTATCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24892</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1091694</contig_pos>
        <strand>+</strand>
        <context>TCTAAACGCA[G/T]GTAWGTAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATATGCGTGAATTCGTTTCTTTTCTCCACAAAAATGTATTCTAAACGCA</left_flank>
        <right_flank>GTATGTAATTATTATCATTATTATGGCGACAATCTCTTGAGGAGCCACAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATAATAAAGTGAGAATGTTCTGTTGGAATTTGTTGAAATAGTCTTAAAACAGTTGAAATTGACAGCTTGCACAAAAAATTGATGTCTCTATTCAATTTTTAGAAAATTTTATGTTCGGACGTTTTTGTCTTTTTTAAGGTTTTTGGAATAAATCCTGAATAACTTTGCACCTGGGTGAAATTTTGAGCTGAAATTGGTAGGAAATAGTTTGAGAATGCTCGTAGTCATGGTGCAATTGTTAAACCTAAGAACACAACTATGATTGTGACTAGTGTTTTACAGAAAGATATGCGTGAATTCGTTCACTTAGAAAAAAGTTAGAAACGAAAATATGAGATTTGGGGCTAAAAAACCATTTTTTGCAATTTTTCACATTCGAATTTGTAAAAAGACAGATGAAGCAAACTTGAGAACAAAACTATGATTGTGACTAGTGTTTTACAAAAAGATATGCGTGAATTCGTTTCTTTTCTCCACAAAAATGTATTCTAAACGCATGTATGTAATTATTATCATTATTATGGCGACAATCTCTTGAGGAGCCACACATCCACATCTCTTTCGAACACGATTCTATCATGGAGACGGTCGGATTGTCCTTGCCAAAATTCGAAGTATCTTGGAACGAGATGATATCCTCCCCAAGAATCCGGCTTCGTGATGGCATGGGATCCTTCACGCTCAGCTAGCTCAATGAGCTCCGTTCTCTTGGCTTCTAGGTACTGAAACTCGGATTTTTAGCTCAATTTCAGATATTGTCAAACAAATACCTGTCTGTCCGGAACCACTTCAGATTGAACACTCAACTTGGATGATATACGACTAGAAAGTGGTCTTTGGTTCCAGTAATTAACGGCCTTTTCGTCTTGAAGTTTCTCGACCACACCTTCCACGCGAACCTGAAAAATTTTTAATGTGATTCTCAAATTCGATCTTGTTAGATTAACCTGACGATTGACTTTCGGCCAGTAGAACAACATAGAAGCATTTGGATTTTC</canonical>
            <polymorphic>GAATAATAAAGTGAGAATGTTCTGTTGGAATTTGTTGAAATAGTCTTAAAACAGTTGAAATTGACAGCTTGCACAAAAAATTGATGTCTCTATTCAATTTTTAGAAAATTTTATGTTCGGACGTTTTTGTCTTTTTTAAGGTTTTTGGAATAAATCCTGAATAACTTTGCACCTGGGTGAAATTTTGAGCTGAAATTGGTAGGAAATAGTTTGAGAATGCTCGTAGTCATGGTGCAATTGTTAAACCTAAGAACACAACTATGATTGTGACTAGTGTTTTACAGAAAGATATGCGTGAATTCGTTCACTTAGAAAAAAGTTAGAAACGAAAATATGAGATTTGGGGCTAAAAAACCATTTTTTGCAATTTTTCACATTCGAATTTGTAAAAAGACAGATGAAGCAAACTTGAGAACAAAACTATGATTGTGACTAGTGTTTTACAAAAAGATATGCGTGAATTCGTTTCTTTTCTCCACAAAAATGTATTCTAAACGCAKGTATGTAATTATTATCATTATTATGGCGACAATCTCTTGAGGAGCCACACATCCACATCTCTTTCGAACACGATTCTATCATGGAGACGGTCGGATTGTCCTTGCCAAAATTCGAAGTATCTTGGAACGAGATGATATCCTCCCCAAGAATCCGGCTTCGTGATGGCATGGGATCCTTCACGCTCAGCTAGCTCAATGAGCTCCGTTCTCTTGGCTTCTAGGTACTGAAACTCGGATTTTTAGCTCAATTTCAGATATTGTCAAACAAATACCTGTCTGTCCGGAACCACTTCAGATTGAACACTCAACTTGGATGATATACGACTAGAAAGTGGTCTTTGGTTCCAGTAATTAACGGCCTTTTCGTCTTGAAGTTTCTCGACCACACCTTCCACGCGAACCTGAAAAATTTTTAATGTGATTCTCAAATTCGATCTTGTTAGATTAACCTGACGATTGACTTTCGGCCAGTAGAACAACATAGAAGCATTTGGATTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>333 270 228 87 82</canonical_bands>
                <polymorphic_bands>352 333 228 87</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGGTGCAATTGTTAAACCTA</pcr_primer_p1>
		<pcr_primer_p2>CGAAAGAGATGTGGATGTGT</pcr_primer_p2>
		<pcr_amplicon_size>338</pcr_amplicon_size>
		<canonical_amplicon>ATGGTGCAATTGTTAAACCTAAGAACACAACTATGATTGTGACTAGTGTTTTACAGAAAGATATGCGTGAATTCGTTCACTTAGAAAAAAGTTAGAAACGAAAATATGAGATTTGGGGCTAAAAAACCATTTTTTGCAATTTTTCACATTCGAATTTGTAAAAAGACAGATGAAGCAAACTTGAGAACAAAACTATGATTGTGACTAGTGTTTTACAAAAAGATATGCGTGAATTCGTTTCTTTTCTCCACAAAAATGTATTCTAAACGCATGTATGTAATTATTATCATTATTATGGCGACAATCTCTTGAGGAGCCACACATCCACATCTCTTTCG</canonical_amplicon>
		<polymorphic_amplicon>ATGGTGCAATTGTTAAACCTAAGAACACAACTATGATTGTGACTAGTGTTTTACAGAAAGATATGCGTGAATTCGTTCACTTAGAAAAAAGTTAGAAACGAAAATATGAGATTTGGGGCTAAAAAACCATTTTTTGCAATTTTTCACATTCGAATTTGTAAAAAGACAGATGAAGCAAACTTGAGAACAAAACTATGATTGTGACTAGTGTTTTACAAAAAGATATGCGTGAATTCGTTTCTTTTCTCCACAAAAATGTATTCTAAACGCAKGTATGTAATTATTATCATTATTATGGCGACAATCTCTTGAGGAGCCACACATCCACATCTCTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24893</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1091698</contig_pos>
        <strand>+</strand>
        <context>AACGCAKGTA[A/T]GTAATTATTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGCGTGAATTCGTTTCTTTTCTCCACAAAAATGTATTCTAAACGCATGTA</left_flank>
        <right_flank>GTAATTATTATCATTATTATGGCGACAATCTCTTGAGGAGCCACACATCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAAAGTGAGAATGTTCTGTTGGAATTTGTTGAAATAGTCTTAAAACAGTTGAAATTGACAGCTTGCACAAAAAATTGATGTCTCTATTCAATTTTTAGAAAATTTTATGTTCGGACGTTTTTGTCTTTTTTAAGGTTTTTGGAATAAATCCTGAATAACTTTGCACCTGGGTGAAATTTTGAGCTGAAATTGGTAGGAAATAGTTTGAGAATGCTCGTAGTCATGGTGCAATTGTTAAACCTAAGAACACAACTATGATTGTGACTAGTGTTTTACAGAAAGATATGCGTGAATTCGTTCACTTAGAAAAAAGTTAGAAACGAAAATATGAGATTTGGGGCTAAAAAACCATTTTTTGCAATTTTTCACATTCGAATTTGTAAAAAGACAGATGAAGCAAACTTGAGAACAAAACTATGATTGTGACTAGTGTTTTACAAAAAGATATGCGTGAATTCGTTTCTTTTCTCCACAAAAATGTATTCTAAACGCATGTATGTAATTATTATCATTATTATGGCGACAATCTCTTGAGGAGCCACACATCCACATCTCTTTCGAACACGATTCTATCATGGAGACGGTCGGATTGTCCTTGCCAAAATTCGAAGTATCTTGGAACGAGATGATATCCTCCCCAAGAATCCGGCTTCGTGATGGCATGGGATCCTTCACGCTCAGCTAGCTCAATGAGCTCCGTTCTCTTGGCTTCTAGGTACTGAAACTCGGATTTTTAGCTCAATTTCAGATATTGTCAAACAAATACCTGTCTGTCCGGAACCACTTCAGATTGAACACTCAACTTGGATGATATACGACTAGAAAGTGGTCTTTGGTTCCAGTAATTAACGGCCTTTTCGTCTTGAAGTTTCTCGACCACACCTTCCACGCGAACCTGAAAAATTTTTAATGTGATTCTCAAATTCGATCTTGTTAGATTAACCTGACGATTGACTTTCGGCCAGTAGAACAACATAGAAGCATTTGGATTTTCATCC</canonical>
            <polymorphic>AATAAAGTGAGAATGTTCTGTTGGAATTTGTTGAAATAGTCTTAAAACAGTTGAAATTGACAGCTTGCACAAAAAATTGATGTCTCTATTCAATTTTTAGAAAATTTTATGTTCGGACGTTTTTGTCTTTTTTAAGGTTTTTGGAATAAATCCTGAATAACTTTGCACCTGGGTGAAATTTTGAGCTGAAATTGGTAGGAAATAGTTTGAGAATGCTCGTAGTCATGGTGCAATTGTTAAACCTAAGAACACAACTATGATTGTGACTAGTGTTTTACAGAAAGATATGCGTGAATTCGTTCACTTAGAAAAAAGTTAGAAACGAAAATATGAGATTTGGGGCTAAAAAACCATTTTTTGCAATTTTTCACATTCGAATTTGTAAAAAGACAGATGAAGCAAACTTGAGAACAAAACTATGATTGTGACTAGTGTTTTACAAAAAGATATGCGTGAATTCGTTTCTTTTCTCCACAAAAATGTATTCTAAACGCATGTAWGTAATTATTATCATTATTATGGCGACAATCTCTTGAGGAGCCACACATCCACATCTCTTTCGAACACGATTCTATCATGGAGACGGTCGGATTGTCCTTGCCAAAATTCGAAGTATCTTGGAACGAGATGATATCCTCCCCAAGAATCCGGCTTCGTGATGGCATGGGATCCTTCACGCTCAGCTAGCTCAATGAGCTCCGTTCTCTTGGCTTCTAGGTACTGAAACTCGGATTTTTAGCTCAATTTCAGATATTGTCAAACAAATACCTGTCTGTCCGGAACCACTTCAGATTGAACACTCAACTTGGATGATATACGACTAGAAAGTGGTCTTTGGTTCCAGTAATTAACGGCCTTTTCGTCTTGAAGTTTCTCGACCACACCTTCCACGCGAACCTGAAAAATTTTTAATGTGATTCTCAAATTCGATCTTGTTAGATTAACCTGACGATTGACTTTCGGCCAGTAGAACAACATAGAAGCATTTGGATTTTCATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGGTGCAATTGTTAAACCTA</pcr_primer_p1>
		<pcr_primer_p2>CGAAAGAGATGTGGATGTGT</pcr_primer_p2>
		<pcr_amplicon_size>338</pcr_amplicon_size>
		<canonical_amplicon>ATGGTGCAATTGTTAAACCTAAGAACACAACTATGATTGTGACTAGTGTTTTACAGAAAGATATGCGTGAATTCGTTCACTTAGAAAAAAGTTAGAAACGAAAATATGAGATTTGGGGCTAAAAAACCATTTTTTGCAATTTTTCACATTCGAATTTGTAAAAAGACAGATGAAGCAAACTTGAGAACAAAACTATGATTGTGACTAGTGTTTTACAAAAAGATATGCGTGAATTCGTTTCTTTTCTCCACAAAAATGTATTCTAAACGCATGTATGTAATTATTATCATTATTATGGCGACAATCTCTTGAGGAGCCACACATCCACATCTCTTTCG</canonical_amplicon>
		<polymorphic_amplicon>ATGGTGCAATTGTTAAACCTAAGAACACAACTATGATTGTGACTAGTGTTTTACAGAAAGATATGCGTGAATTCGTTCACTTAGAAAAAAGTTAGAAACGAAAATATGAGATTTGGGGCTAAAAAACCATTTTTTGCAATTTTTCACATTCGAATTTGTAAAAAGACAGATGAAGCAAACTTGAGAACAAAACTATGATTGTGACTAGTGTTTTACAAAAAGATATGCGTGAATTCGTTTCTTTTCTCCACAAAAATGTATTCTAAACGCATGTAWGTAATTATTATCATTATTATGGCGACAATCTCTTGAGGAGCCACACATCCACATCTCTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24894</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1097950</contig_pos>
        <strand></strand>
        <context>ctcatctgaa[G/A]tatattagga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AACCCACCCACACTATCAACTTTTAACTCGATTATCTCGACTCATCTGAA</left_flank>
        <right_flank>TATATTAGGAATTTGTCAACTGATAAATTATGTATCATAATATCACCAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTATCAGATATCTGCCCTTGCTCACGTTTTCCTTGGATTATGGATGTTATTGGATCCCAAACGGAACTATATTTTGGACTTGGTGCACTTTTCCGAAAATGACCCACTGCTGGTGAGATTTAGAAAATTTCAGAAGTATTTTGAGTTGAAAAATTTCAGAAAGCCTCTGCATATGTCTCATTGGTTTGTGGATGTGCCCAACTGTTGGTCGGGTTCCTTGGGCTGTGTGGTGCAGTGAATAGAAGTCGATTTTTGTTGCTCATGGTGAGATTAATTCTTGGTCTATAAAGTTACAGGGTTTTTTCAGTTCGTGATGTTCCTGATCTGCACTTTTCTGGCTGATGTTGCAATGGGAACACTGTCGCTATTCTACAAAGACAAGGTGAGTGATTTTGTCGTTTTTTGTGTTGGTTTCAGTTCTGGGTTACCATTTTTCCTCTAATAAGAACCCACCCACACTATCAACTTTTAACTCGATTATCTCGACTCATCTGAAGTATATTAGGAATTTGTCAACTGATAAATTATGTATCATAATATCACCAATATTTCATTTGTCGAATTTTTTCATATCTTCTGACAAAATCTGAATAATTGATCCCAAAGTTGACGGTATCGGTTGCCTTTTAGCAGAGGAAATGCGGTAGTTGTTTCTCTCTCTCTTGACGTTTAGTTAGTTTTTAATCTCCTCAATTTCTGTTTGTTTTTATTTCTTTTAGAAGTTCGAGAAAACATTGTGATGATTGTTAATGTGTTCCATGTTTTTTTAACTTTTACAGTAATCCAACATAATCATTATTTACATAAGGTTTTTATTTGCACTGTGTGTTTATATAACTTTGAACATTAATAGAATTACTTCTTTAACTTTCACTTTTGAGCTCATTTATGTTAGTTCCTTCGAAATATGCCAAAAAGTTTCAACATAATATCCAAAACGTTATCAATTGTAACATTTTAATAGCATTTATAGAAACCGAGGTAATCAAGCTGAAAG</canonical>
            <polymorphic>ATTTTATCAGATATCTGCCCTTGCTCACGTTTTCCTTGGATTATGGATGTTATTGGATCCCAAACGGAACTATATTTTGGACTTGGTGCACTTTTCCGAAAATGACCCACTGCTGGTGAGATTTAGAAAATTTCAGAAGTATTTTGAGTTGAAAAATTTCAGAAAGCCTCTGCATATGTCTCATTGGTTTGTGGATGTGCCCAACTGTTGGTCGGGTTCCTTGGGCTGTGTGGTGCAGTGAATAGAAGTCGATTTTTGTTGCTCATGGTGAGATTAATTCTTGGTCTATAAAGTTACAGGGTTTTTTCAGTTCGTGATGTTCCTGATCTGCACTTTTCTGGCTGATGTTGCAATGGGAACACTGTCGCTATTCTACAAAGACAAGGTGAGTGATTTTGTCGTTTTTTGTGTTGGTTTCAGTTCTGGGTTACCATTTTTCCTCTAATAAGAACCCACCCACACTATCAACTTTTAACTCGATTATCTCGACTCATCTGAARTATATTAGGAATTTGTCAACTGATAAATTATGTATCATAATATCACCAATATTTCATTTGTCGAATTTTTTCATATCTTCTGACAAAATCTGAATAATTGATCCCAAAGTTGACGGTATCGGTTGCCTTTTAGCAGAGGAAATGCGGTAGTTGTTTCTCTCTCTCTTGACGTTTAGTTAGTTTTTAATCTCCTCAATTTCTGTTTGTTTTTATTTCTTTTAGAAGTTCGAGAAAACATTGTGATGATTGTTAATGTGTTCCATGTTTTTTTAACTTTTACAGTAATCCAACATAATCATTATTTACATAAGGTTTTTATTTGCACTGTGTGTTTATATAACTTTGAACATTAATAGAATTACTTCTTTAACTTTCACTTTTGAGCTCATTTATGTTAGTTCCTTCGAAATATGCCAAAAAGTTTCAACATAATATCCAAAACGTTATCAATTGTAACATTTTAATAGCATTTATAGAAACCGAGGTAATCAAGCTGAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTCTGGGTTACCATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCAAGAGAGAGAGAAACAACTACC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAGTTCTGGGTTACCATTTTTCCTCTAATAAGAACCCACCCACACTATCAACTTTTAACTCGATTATCTCGACTCATCTGAAGTATATTAGGAATTTGTCAACTGATAAATTATGTATCATAATATCACCAATATTTCATTTGTCGAATTTTTTCATATCTTCTGACAAAATCTGAATAATTGATCCCAAAGTTGACGGTATCGGTTGCCTTTTAGCAGAGGAAATGCGGTAGTTGTTTCTCTCTCTCTTGA</canonical_amplicon>
		<polymorphic_amplicon>CAGTTCTGGGTTACCATTTTTCCTCTAATAAGAACCCACCCACACTATCAACTTTTAACTCGATTATCTCGACTCATCTGAARTATATTAGGAATTTGTCAACTGATAAATTATGTATCATAATATCACCAATATTTCATTTGTCGAATTTTTTCATATCTTCTGACAAAATCTGAATAATTGATCCCAAAGTTGACGGTATCGGTTGCCTTTTAGCAGAGGAAATGCGGTAGTTGTTTCTCTCTCTCTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24895</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1119355</contig_pos>
        <strand>+</strand>
        <context>TTTTCATTTA[A/G]AAAATGGTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATTATGACAAACATTTCACCAGTTGATATATTTCCGTGTTTTCATTTA</left_flank>
        <right_flank>AAAATGGTAATCGAAATAAAAGTTCAAATACACTGCAGCTTTCAATTAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTTCGGGTGAAAATACCCCATTTGTCGGCTCAACCCCCCTAACGACCTAATCAACGGCTCAGGGGGTAAAAGAATATTTGCGAACAAAAAAGAATGGAAGACATGGCGTCAGAAACGTCTGATCCTATTCAAATAATGATTGTGAGCACTCCAAACCTGCCTAAGACATCGATTTGCTTAACTGTCGAAGATTTTACAGAGCCATTACGGTAAAGTGTAAACTAAAATGTACACCAGATTTCTATCTGTGGGGTTTCCATATTATTGAAAAGTTATTTTTATTCACTAATACATAAAACGTTAACTAAAACATTTTTAAATATCTTTTGACGTGACATTTGAAATACCGTAGACACTATAACAGAAGGTCACCCTATACTTGCACTTTGAGATTAATTACCTCAAAAAAAGTGATCAGAAATGTGTCAACTAATAAAACGTTGATGATATTATGACAAACATTTCACCAGTTGATATATTTCCGTGTTTTCATTTAGAAAATGGTAATCGAAATAAAAGTTCAAATACACTGCAGCTTTCAATTAGAGTAAAGATAACATTTGCTTTAAAAACACACAAAACCAAAAATGAAAAATGTGTTCCTTGGTTTCTGTAACCTAAAAATACAATTAGGTCCAGAAATCGAATAGATTTACATCATCGCCAATTCTCCCAAGGTTCCGATGAATATTATATGTGATGAAACTTCATGAACAATATTTTTACCCAGAACAAAACGATGATGCTGAGAAAACAAAATCATTGTTAATCTAAAATGAGAACAAATTTTAGCCGTCGCTCGCTACCAAAAGAGGAAAGCCCACGAAGCGGTCTCAAACCACATGACACGTTGGGAGCAGATGATCGACGTCAATCTGCTTGCAGTTTGGCTGAGCGCCGAATCGAGGAGCACAGGTGCGTAGATGAGCCGTGGATTGACAAGAAGTGTCATAATCCAATGTTACGGATTGATTCTTGTTTTTGGGATTTGACGCGG</canonical>
            <polymorphic>CAATTTCGGGTGAAAATACCCCATTTGTCGGCTCAACCCCCCTAACGACCTAATCAACGGCTCAGGGGGTAAAAGAATATTTGCGAACAAAAAAGAATGGAAGACATGGCGTCAGAAACGTCTGATCCTATTCAAATAATGATTGTGAGCACTCCAAACCTGCCTAAGACATCGATTTGCTTAACTGTCGAAGATTTTACAGAGCCATTACGGTAAAGTGTAAACTAAAATGTACACCAGATTTCTATCTGTGGGGTTTCCATATTATTGAAAAGTTATTTTTATTCACTAATACATAAAACGTTAACTAAAACATTTTTAAATATCTTTTGACGTGACATTTGAAATACCGTAGACACTATAACAGAAGGTCACCCTATACTTGCACTTTGAGATTAATTACCTCAAAAAAAGTGATCAGAAATGTGTCAACTAATAAAACGTTGATGATATTATGACAAACATTTCACCAGTTGATATATTTCCGTGTTTTCATTTARAAAATGGTAATCGAAATAAAAGTTCAAATACACTGCAGCTTTCAATTAGAGTAAAGATAACATTTGCTTTAAAAACACACAAAACCAAAAATGAAAAATGTGTTCCTTGGTTTCTGTAACCTAAAAATACAATTAGGTCCAGAAATCGAATAGATTTACATCATCGCCAATTCTCCCAAGGTTCCGATGAATATTATATGTGATGAAACTTCATGAACAATATTTTTACCCAGAACAAAACGATGATGCTGAGAAAACAAAATCATTGTTAATCTAAAATGAGAACAAATTTTAGCCGTCGCTCGCTACCAAAAGAGGAAAGCCCACGAAGCGGTCTCAAACCACATGACACGTTGGGAGCAGATGATCGACGTCAATCTGCTTGCAGTTTGGCTGAGCGCCGAATCGAGGAGCACAGGTGCGTAGATGAGCCGTGGATTGACAAGAAGTGTCATAATCCAATGTTACGGATTGATTCTTGTTTTTGGGATTTGACGCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAAATATCTTTTGACGTGACATT</pcr_primer_p1>
		<pcr_primer_p2>AGCAAATGTTATCTTTACTCTAATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAAATATCTTTTGACGTGACATTTGAAATACCGTAGACACTATAACAGAAGGTCACCCTATACTTGCACTTTGAGATTAATTACCTCAAAAAAAGTGATCAGAAATGTGTCAACTAATAAAACGTTGATGATATTATGACAAACATTTCACCAGTTGATATATTTCCGTGTTTTCATTTAGAAAATGGTAATCGAAATAAAAGTTCAAATACACTGCAGCTTTCAATTAGAGTAAAGATAACATTTGCT</canonical_amplicon>
		<polymorphic_amplicon>TTAAATATCTTTTGACGTGACATTTGAAATACCGTAGACACTATAACAGAAGGTCACCCTATACTTGCACTTTGAGATTAATTACCTCAAAAAAAGTGATCAGAAATGTGTCAACTAATAAAACGTTGATGATATTATGACAAACATTTCACCAGTTGATATATTTCCGTGTTTTCATTTARAAAATGGTAATCGAAATAAAAGTTCAAATACACTGCAGCTTTCAATTAGAGTAAAGATAACATTTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24896</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1119367</contig_pos>
        <strand>+</strand>
        <context>AAATGGTAAT[C/T]GARATAAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACATTTCACCAGTTGATATATTTCCGTGTTTTCATTTAGAAAATGGTAAT</left_flank>
        <right_flank>GAAATAAAAGTTCAAATACACTGCAGCTTTCAATTAGAGTAAAGATAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATACCCCATTTGTCGGCTCAACCCCCCTAACGACCTAATCAACGGCTCAGGGGGTAAAAGAATATTTGCGAACAAAAAAGAATGGAAGACATGGCGTCAGAAACGTCTGATCCTATTCAAATAATGATTGTGAGCACTCCAAACCTGCCTAAGACATCGATTTGCTTAACTGTCGAAGATTTTACAGAGCCATTACGGTAAAGTGTAAACTAAAATGTACACCAGATTTCTATCTGTGGGGTTTCCATATTATTGAAAAGTTATTTTTATTCACTAATACATAAAACGTTAACTAAAACATTTTTAAATATCTTTTGACGTGACATTTGAAATACCGTAGACACTATAACAGAAGGTCACCCTATACTTGCACTTTGAGATTAATTACCTCAAAAAAAGTGATCAGAAATGTGTCAACTAATAAAACGTTGATGATATTATGACAAACATTTCACCAGTTGATATATTTCCGTGTTTTCATTTAGAAAATGGTAATCGAAATAAAAGTTCAAATACACTGCAGCTTTCAATTAGAGTAAAGATAACATTTGCTTTAAAAACACACAAAACCAAAAATGAAAAATGTGTTCCTTGGTTTCTGTAACCTAAAAATACAATTAGGTCCAGAAATCGAATAGATTTACATCATCGCCAATTCTCCCAAGGTTCCGATGAATATTATATGTGATGAAACTTCATGAACAATATTTTTACCCAGAACAAAACGATGATGCTGAGAAAACAAAATCATTGTTAATCTAAAATGAGAACAAATTTTAGCCGTCGCTCGCTACCAAAAGAGGAAAGCCCACGAAGCGGTCTCAAACCACATGACACGTTGGGAGCAGATGATCGACGTCAATCTGCTTGCAGTTTGGCTGAGCGCCGAATCGAGGAGCACAGGTGCGTAGATGAGCCGTGGATTGACAAGAAGTGTCATAATCCAATGTTACGGATTGATTCTTGTTTTTGGGATTTGACGCGGGGCTCGGTGCCA</canonical>
            <polymorphic>AAAATACCCCATTTGTCGGCTCAACCCCCCTAACGACCTAATCAACGGCTCAGGGGGTAAAAGAATATTTGCGAACAAAAAAGAATGGAAGACATGGCGTCAGAAACGTCTGATCCTATTCAAATAATGATTGTGAGCACTCCAAACCTGCCTAAGACATCGATTTGCTTAACTGTCGAAGATTTTACAGAGCCATTACGGTAAAGTGTAAACTAAAATGTACACCAGATTTCTATCTGTGGGGTTTCCATATTATTGAAAAGTTATTTTTATTCACTAATACATAAAACGTTAACTAAAACATTTTTAAATATCTTTTGACGTGACATTTGAAATACCGTAGACACTATAACAGAAGGTCACCCTATACTTGCACTTTGAGATTAATTACCTCAAAAAAAGTGATCAGAAATGTGTCAACTAATAAAACGTTGATGATATTATGACAAACATTTCACCAGTTGATATATTTCCGTGTTTTCATTTAGAAAATGGTAATYGAAATAAAAGTTCAAATACACTGCAGCTTTCAATTAGAGTAAAGATAACATTTGCTTTAAAAACACACAAAACCAAAAATGAAAAATGTGTTCCTTGGTTTCTGTAACCTAAAAATACAATTAGGTCCAGAAATCGAATAGATTTACATCATCGCCAATTCTCCCAAGGTTCCGATGAATATTATATGTGATGAAACTTCATGAACAATATTTTTACCCAGAACAAAACGATGATGCTGAGAAAACAAAATCATTGTTAATCTAAAATGAGAACAAATTTTAGCCGTCGCTCGCTACCAAAAGAGGAAAGCCCACGAAGCGGTCTCAAACCACATGACACGTTGGGAGCAGATGATCGACGTCAATCTGCTTGCAGTTTGGCTGAGCGCCGAATCGAGGAGCACAGGTGCGTAGATGAGCCGTGGATTGACAAGAAGTGTCATAATCCAATGTTACGGATTGATTCTTGTTTTTGGGATTTGACGCGGGGCTCGGTGCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>323 222 161 135 105 38 16</canonical_bands>
                <polymorphic_bands>458 222 161 105 38 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAAATATCTTTTGACGTGACAT</pcr_primer_p1>
		<pcr_primer_p2>TGTGTTTTTAAAGCAAATGTTATC</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>TTTAAATATCTTTTGACGTGACATTTGAAATACCGTAGACACTATAACAGAAGGTCACCCTATACTTGCACTTTGAGATTAATTACCTCAAAAAAAGTGATCAGAAATGTGTCAACTAATAAAACGTTGATGATATTATGACAAACATTTCACCAGTTGATATATTTCCGTGTTTTCATTTAGAAAATGGTAATCGAAATAAAAGTTCAAATACACTGCAGCTTTCAATTAGAGTAAAGATAACATTTGCTTTAAAAACACA</canonical_amplicon>
		<polymorphic_amplicon>TTTAAATATCTTTTGACGTGACATTTGAAATACCGTAGACACTATAACAGAAGGTCACCCTATACTTGCACTTTGAGATTAATTACCTCAAAAAAAGTGATCAGAAATGTGTCAACTAATAAAACGTTGATGATATTATGACAAACATTTCACCAGTTGATATATTTCCGTGTTTTCATTTAGAAAATGGTAATYGAAATAAAAGTTCAAATACACTGCAGCTTTCAATTAGAGTAAAGATAACATTTGCTTTAAAAACACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24897</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1119370</contig_pos>
        <strand>+</strand>
        <context>TGGTAATYGA[A/G]ATAAAAGTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCACCAGTTGATATATTTCCGTGTTTTCATTTAGAAAATGGTAATCGA</left_flank>
        <right_flank>ATAAAAGTTCAAATACACTGCAGCTTTCAATTAGAGTAAAGATAACATTT</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATACCCCATTTGTCGGCTCAACCCCCCTAACGACCTAATCAACGGCTCAGGGGGTAAAAGAATATTTGCGAACAAAAAAGAATGGAAGACATGGCGTCAGAAACGTCTGATCCTATTCAAATAATGATTGTGAGCACTCCAAACCTGCCTAAGACATCGATTTGCTTAACTGTCGAAGATTTTACAGAGCCATTACGGTAAAGTGTAAACTAAAATGTACACCAGATTTCTATCTGTGGGGTTTCCATATTATTGAAAAGTTATTTTTATTCACTAATACATAAAACGTTAACTAAAACATTTTTAAATATCTTTTGACGTGACATTTGAAATACCGTAGACACTATAACAGAAGGTCACCCTATACTTGCACTTTGAGATTAATTACCTCAAAAAAAGTGATCAGAAATGTGTCAACTAATAAAACGTTGATGATATTATGACAAACATTTCACCAGTTGATATATTTCCGTGTTTTCATTTAGAAAATGGTAATCGAAATAAAAGTTCAAATACACTGCAGCTTTCAATTAGAGTAAAGATAACATTTGCTTTAAAAACACACAAAACCAAAAATGAAAAATGTGTTCCTTGGTTTCTGTAACCTAAAAATACAATTAGGTCCAGAAATCGAATAGATTTACATCATCGCCAATTCTCCCAAGGTTCCGATGAATATTATATGTGATGAAACTTCATGAACAATATTTTTACCCAGAACAAAACGATGATGCTGAGAAAACAAAATCATTGTTAATCTAAAATGAGAACAAATTTTAGCCGTCGCTCGCTACCAAAAGAGGAAAGCCCACGAAGCGGTCTCAAACCACATGACACGTTGGGAGCAGATGATCGACGTCAATCTGCTTGCAGTTTGGCTGAGCGCCGAATCGAGGAGCACAGGTGCGTAGATGAGCCGTGGATTGACAAGAAGTGTCATAATCCAATGTTACGGATTGATTCTTGTTTTTGGGATTTGACGCGGGGCTCGGTGCCATTT</canonical>
            <polymorphic>ATACCCCATTTGTCGGCTCAACCCCCCTAACGACCTAATCAACGGCTCAGGGGGTAAAAGAATATTTGCGAACAAAAAAGAATGGAAGACATGGCGTCAGAAACGTCTGATCCTATTCAAATAATGATTGTGAGCACTCCAAACCTGCCTAAGACATCGATTTGCTTAACTGTCGAAGATTTTACAGAGCCATTACGGTAAAGTGTAAACTAAAATGTACACCAGATTTCTATCTGTGGGGTTTCCATATTATTGAAAAGTTATTTTTATTCACTAATACATAAAACGTTAACTAAAACATTTTTAAATATCTTTTGACGTGACATTTGAAATACCGTAGACACTATAACAGAAGGTCACCCTATACTTGCACTTTGAGATTAATTACCTCAAAAAAAGTGATCAGAAATGTGTCAACTAATAAAACGTTGATGATATTATGACAAACATTTCACCAGTTGATATATTTCCGTGTTTTCATTTAGAAAATGGTAATCGARATAAAAGTTCAAATACACTGCAGCTTTCAATTAGAGTAAAGATAACATTTGCTTTAAAAACACACAAAACCAAAAATGAAAAATGTGTTCCTTGGTTTCTGTAACCTAAAAATACAATTAGGTCCAGAAATCGAATAGATTTACATCATCGCCAATTCTCCCAAGGTTCCGATGAATATTATATGTGATGAAACTTCATGAACAATATTTTTACCCAGAACAAAACGATGATGCTGAGAAAACAAAATCATTGTTAATCTAAAATGAGAACAAATTTTAGCCGTCGCTCGCTACCAAAAGAGGAAAGCCCACGAAGCGGTCTCAAACCACATGACACGTTGGGAGCAGATGATCGACGTCAATCTGCTTGCAGTTTGGCTGAGCGCCGAATCGAGGAGCACAGGTGCGTAGATGAGCCGTGGATTGACAAGAAGTGTCATAATCCAATGTTACGGATTGATTCTTGTTTTTGGGATTTGACGCGGGGCTCGGTGCCATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAAATATCTTTTGACGTGACAT</pcr_primer_p1>
		<pcr_primer_p2>TGTGTTTTTAAAGCAAATGTTATC</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>TTTAAATATCTTTTGACGTGACATTTGAAATACCGTAGACACTATAACAGAAGGTCACCCTATACTTGCACTTTGAGATTAATTACCTCAAAAAAAGTGATCAGAAATGTGTCAACTAATAAAACGTTGATGATATTATGACAAACATTTCACCAGTTGATATATTTCCGTGTTTTCATTTAGAAAATGGTAATCGAAATAAAAGTTCAAATACACTGCAGCTTTCAATTAGAGTAAAGATAACATTTGCTTTAAAAACACA</canonical_amplicon>
		<polymorphic_amplicon>TTTAAATATCTTTTGACGTGACATTTGAAATACCGTAGACACTATAACAGAAGGTCACCCTATACTTGCACTTTGAGATTAATTACCTCAAAAAAAGTGATCAGAAATGTGTCAACTAATAAAACGTTGATGATATTATGACAAACATTTCACCAGTTGATATATTTCCGTGTTTTCATTTAGAAAATGGTAATCGARATAAAAGTTCAAATACACTGCAGCTTTCAATTAGAGTAAAGATAACATTTGCTTTAAAAACACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24898</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1146865</contig_pos>
        <strand>+</strand>
        <context>ACTTGGACCA[A/G]ATGAACGTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTTCAGAGTCTGGAAAGCAGTATTCAGATGATCAAGGACTTGGACCA</left_flank>
        <right_flank>ATGAACGTAGATGCGGTCCAAACTACAGCTGCTCTGGAAGACCAGGATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGTATCAAACTCAAAATGGTTGATTTGGACGCTGAGATTGCCAAATTAAATATGCAAGTATGTTTTTATAGACATAAAACAAAAATCACATCACTTTTCGTTTTTTCCGCTTGTCTTTGCATAATTAAGGTGTTGAAAATGACAGCATATGTTATTAATAATGTGTGGATATGTAGTCTTATTTTGAGCTCAGTCAGTTCCGGAATTTTAGGGTGTTTTTAGATAGTTGGGGAATTTTCTTGGGAGCAGGAAGATTTTTAAAAAATTTGAGGCAGATTTCATGATGATATGTTACCTAATTCGTGGCAACCACCATGAGTTTTGTGGTTTTGAAATATTAATATTACCGATGAACAGAATTTTTTGAATTAAGTTTGAAATTTTTATAAATTTCCGATGTTCTAAGCTGATTATTATTTGTGTAGTCCCTCTAGGTAATGGAAAAAAATTTTTCAGAGTCTGGAAAGCAGTATTCAGATGATCAAGGACTTGGACCAGATGAACGTAGATGCGGTCCAAACTACAGCTGCTCTGGAAGACCAGGATGGTGGGTTCAATAGTTCAACACGGCATTCTTCGAGTTTTTGCGCTTCCCTTATCATTTTCACTCCCTATACAAACCCGCAATCAATAAATTTCAGAACAATTGGACAAAATCGAAGAGAATCTCAGCAAAGTGATCGACGACCTGAATGTAGTCTCAACAAACATCACCGCCATGGAGCATTACTGTGGCTGTGGAATTTTCCGAATTTTTTGGTTGGTCACTGATTTTTTTGCGACAACACGATAATGAAATGTTGTTATTTCAGCGCTCCATTCAAATATTTTCGAAAACGCGAGCGTGACATCATAAAGGAAGAAGTCTTGGAGTAAGAGTCAAACTTTTTATTGTCTCAAGTGGCCTGCATAGAAACAGTGTATTTCAGGAAAATGACGAGTCCGAAATTGCGTAGGAAGGAAGAGAGCAACACGGTGATTTTTAGGAGCTCTAATAA</canonical>
            <polymorphic>AACGTATCAAACTCAAAATGGTTGATTTGGACGCTGAGATTGCCAAATTAAATATGCAAGTATGTTTTTATAGACATAAAACAAAAATCACATCACTTTTCGTTTTTTCCGCTTGTCTTTGCATAATTAAGGTGTTGAAAATGACAGCATATGTTATTAATAATGTGTGGATATGTAGTCTTATTTTGAGCTCAGTCAGTTCCGGAATTTTAGGGTGTTTTTAGATAGTTGGGGAATTTTCTTGGGAGCAGGAAGATTTTTAAAAAATTTGAGGCAGATTTCATGATGATATGTTACCTAATTCGTGGCAACCACCATGAGTTTTGTGGTTTTGAAATATTAATATTACCGATGAACAGAATTTTTTGAATTAAGTTTGAAATTTTTATAAATTTCCGATGTTCTAAGCTGATTATTATTTGTGTAGTCCCTCTAGGTAATGGAAAAAAATTTTTCAGAGTCTGGAAAGCAGTATTCAGATGATCAAGGACTTGGACCARATGAACGTAGATGCGGTCCAAACTACAGCTGCTCTGGAAGACCAGGATGGTGGGTTCAATAGTTCAACACGGCATTCTTCGAGTTTTTGCGCTTCCCTTATCATTTTCACTCCCTATACAAACCCGCAATCAATAAATTTCAGAACAATTGGACAAAATCGAAGAGAATCTCAGCAAAGTGATCGACGACCTGAATGTAGTCTCAACAAACATCACCGCCATGGAGCATTACTGTGGCTGTGGAATTTTCCGAATTTTTTGGTTGGTCACTGATTTTTTTGCGACAACACGATAATGAAATGTTGTTATTTCAGCGCTCCATTCAAATATTTTCGAAAACGCGAGCGTGACATCATAAAGGAAGAAGTCTTGGAGTAAGAGTCAAACTTTTTATTGTCTCAAGTGGCCTGCATAGAAACAGTGTATTTCAGGAAAATGACGAGTCCGAAATTGCGTAGGAAGGAAGAGAGCAACACGGTGATTTTTAGGAGCTCTAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTCCCTCTAGGTAATGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTGAGATTCTCTTCGATTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGTCCCTCTAGGTAATGGAAAAAAATTTTTCAGAGTCTGGAAAGCAGTATTCAGATGATCAAGGACTTGGACCAGATGAACGTAGATGCGGTCCAAACTACAGCTGCTCTGGAAGACCAGGATGGTGGGTTCAATAGTTCAACACGGCATTCTTCGAGTTTTTGCGCTTCCCTTATCATTTTCACTCCCTATACAAACCCGCAATCAATAAATTTCAGAACAATTGGACAAAATCGAAGAGAATCTCAG</canonical_amplicon>
		<polymorphic_amplicon>TAGTCCCTCTAGGTAATGGAAAAAAATTTTTCAGAGTCTGGAAAGCAGTATTCAGATGATCAAGGACTTGGACCARATGAACGTAGATGCGGTCCAAACTACAGCTGCTCTGGAAGACCAGGATGGTGGGTTCAATAGTTCAACACGGCATTCTTCGAGTTTTTGCGCTTCCCTTATCATTTTCACTCCCTATACAAACCCGCAATCAATAAATTTCAGAACAATTGGACAAAATCGAAGAGAATCTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24899</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1147567</contig_pos>
        <strand></strand>
        <context>tgaaaatttc[G/A]cattcacaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAACTCTGAACTTTTTGGAGGTAGTAAAACAGACCTAGATTGAAAATTTC</left_flank>
        <right_flank>CATTCACAAAATTATTCAAAAATACCTAGTTTTTAAGCTATTTGCCGACT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAACAAACATCACCGCCATGGAGCATTACTGTGGCTGTGGAATTTTCCGAATTTTTTGGTTGGTCACTGATTTTTTTGCGACAACACGATAATGAAATGTTGTTATTTCAGCGCTCCATTCAAATATTTTCGAAAACGCGAGCGTGACATCATAAAGGAAGAAGTCTTGGAGTAAGAGTCAAACTTTTTATTGTCTCAAGTGGCCTGCATAGAAACAGTGTATTTCAGGAAAATGACGAGTCCGAAATTGCGTAGGAAGGAAGAGAGCAACACGGTGATTTTTAGGAGCTCTAATAAAAGAAGGGAGTCAACCGGGGATTTTATGAAAAGGTTTGTATTATATATGTACACTAACGGTCAATAAGATTTACAAAAACGTAACTTTCAGTTAATTTTTGACCGTTTCGACCATTTTCAGGAGTTTGGAGCTCGGTTGTCATATTCCCAATAACTCTGAACTTTTTGGAGGTAGTAAAACAGACCTAGATTGAAAATTTCGCATTCACAAAATTATTCAAAAATACCTAGTTTTTAAGCTATTTGCCGACTTCTCTAATAACTGTTTTCCGTCTTTTTCAGTACAAAACTGGACCAGAAAGGGGTGTCTTTCCGAAATCGGCATGAAAAACTAGCAACTATCAAAAAATTCTATGAATACAAAGTTTTCCATCTAGTCCTGTTTCACACCTTCCAAACTTTTCAAAGCGATGAAACACTCGACAGTCGAGCTCCAGTCTTCTGAAAATTTTCAAAATGGCCAAAAATCAACTGAAAAACACGTCTTTTTATAATAACCTTATTGTCCGGTATCGACGTTCTCAAATTGATTTTGAAGGGGTCAAAGTTTCTTTTTTTCAGATTAACATGCGACACAATCGAAGACGAATTAGAGCGTAATCTGATGCAAATCGATCAAGGGCTTGAATCTGTAAAAACTTGGCTGTTGATATGCACGTTCAACTCAAAATACAGGAACCAAAACTGAACAGAATCGAAGAG</canonical>
            <polymorphic>TCAACAAACATCACCGCCATGGAGCATTACTGTGGCTGTGGAATTTTCCGAATTTTTTGGTTGGTCACTGATTTTTTTGCGACAACACGATAATGAAATGTTGTTATTTCAGCGCTCCATTCAAATATTTTCGAAAACGCGAGCGTGACATCATAAAGGAAGAAGTCTTGGAGTAAGAGTCAAACTTTTTATTGTCTCAAGTGGCCTGCATAGAAACAGTGTATTTCAGGAAAATGACGAGTCCGAAATTGCGTAGGAAGGAAGAGAGCAACACGGTGATTTTTAGGAGCTCTAATAAAAGAAGGGAGTCAACCGGGGATTTTATGAAAAGGTTTGTATTATATATGTACACTAACGGTCAATAAGATTTACAAAAACGTAACTTTCAGTTAATTTTTGACCGTTTCGACCATTTTCAGGAGTTTGGAGCTCGGTTGTCATATTCCCAATAACTCTGAACTTTTTGGAGGTAGTAAAACAGACCTAGATTGAAAATTTCRCATTCACAAAATTATTCAAAAATACCTAGTTTTTAAGCTATTTGCCGACTTCTCTAATAACTGTTTTCCGTCTTTTTCAGTACAAAACTGGACCAGAAAGGGGTGTCTTTCCGAAATCGGCATGAAAAACTAGCAACTATCAAAAAATTCTATGAATACAAAGTTTTCCATCTAGTCCTGTTTCACACCTTCCAAACTTTTCAAAGCGATGAAACACTCGACAGTCGAGCTCCAGTCTTCTGAAAATTTTCAAAATGGCCAAAAATCAACTGAAAAACACGTCTTTTTATAATAACCTTATTGTCCGGTATCGACGTTCTCAAATTGATTTTGAAGGGGTCAAAGTTTCTTTTTTTCAGATTAACATGCGACACAATCGAAGACGAATTAGAGCGTAATCTGATGCAAATCGATCAAGGGCTTGAATCTGTAAAAACTTGGCTGTTGATATGCACGTTCAACTCAAAATACAGGAACCAAAACTGAACAGAATCGAAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTTTATGAAAAGGTTTGTATT</pcr_primer_p1>
		<pcr_primer_p2>CAAAATCAATTTGAGAACGTC</pcr_primer_p2>
		<pcr_amplicon_size>517</pcr_amplicon_size>
		<canonical_amplicon>GGATTTTATGAAAAGGTTTGTATTATATATGTACACTAACGGTCAATAAGATTTACAAAAACGTAACTTTCAGTTAATTTTTGACCGTTTCGACCATTTTCAGGAGTTTGGAGCTCGGTTGTCATATTCCCAATAACTCTGAACTTTTTGGAGGTAGTAAAACAGACCTAGATTGAAAATTTCGCATTCACAAAATTATTCAAAAATACCTAGTTTTTAAGCTATTTGCCGACTTCTCTAATAACTGTTTTCCGTCTTTTTCAGTACAAAACTGGACCAGAAAGGGGTGTCTTTCCGAAATCGGCATGAAAAACTAGCAACTATCAAAAAATTCTATGAATACAAAGTTTTCCATCTAGTCCTGTTTCACACCTTCCAAACTTTTCAAAGCGATGAAACACTCGACAGTCGAGCTCCAGTCTTCTGAAAATTTTCAAAATGGCCAAAAATCAACTGAAAAACACGTCTTTTTATAATAACCTTATTGTCCGGTATCGACGTTCTCAAATTGATTTTG</canonical_amplicon>
		<polymorphic_amplicon>GGATTTTATGAAAAGGTTTGTATTATATATGTACACTAACGGTCAATAAGATTTACAAAAACGTAACTTTCAGTTAATTTTTGACCGTTTCGACCATTTTCAGGAGTTTGGAGCTCGGTTGTCATATTCCCAATAACTCTGAACTTTTTGGAGGTAGTAAAACAGACCTAGATTGAAAATTTCRCATTCACAAAATTATTCAAAAATACCTAGTTTTTAAGCTATTTGCCGACTTCTCTAATAACTGTTTTCCGTCTTTTTCAGTACAAAACTGGACCAGAAAGGGGTGTCTTTCCGAAATCGGCATGAAAAACTAGCAACTATCAAAAAATTCTATGAATACAAAGTTTTCCATCTAGTCCTGTTTCACACCTTCCAAACTTTTCAAAGCGATGAAACACTCGACAGTCGAGCTCCAGTCTTCTGAAAATTTTCAAAATGGCCAAAAATCAACTGAAAAACACGTCTTTTTATAATAACCTTATTGTCCGGTATCGACGTTCTCAAATTGATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24900</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1147720</contig_pos>
        <strand></strand>
        <context>aaaaattcta[T/A]raatacaaag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GTGTCTTTCCGAAATCGGCATGAAAAACTAGCAACTATCAAAAAATTCTA</left_flank>
        <right_flank>GAATACAAAGTTTTCCATCTAGTCCTGTTTCACACCTTCCAAACTTTTCA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAGGAAGAAGTCTTGGAGTAAGAGTCAAACTTTTTATTGTCTCAAGTGGCCTGCATAGAAACAGTGTATTTCAGGAAAATGACGAGTCCGAAATTGCGTAGGAAGGAAGAGAGCAACACGGTGATTTTTAGGAGCTCTAATAAAAGAAGGGAGTCAACCGGGGATTTTATGAAAAGGTTTGTATTATATATGTACACTAACGGTCAATAAGATTTACAAAAACGTAACTTTCAGTTAATTTTTGACCGTTTCGACCATTTTCAGGAGTTTGGAGCTCGGTTGTCATATTCCCAATAACTCTGAACTTTTTGGAGGTAGTAAAACAGACCTAGATTGAAAATTTCGCATTCACAAAATTATTCAAAAATACCTAGTTTTTAAGCTATTTGCCGACTTCTCTAATAACTGTTTTCCGTCTTTTTCAGTACAAAACTGGACCAGAAAGGGGTGTCTTTCCGAAATCGGCATGAAAAACTAGCAACTATCAAAAAATTCTATGAATACAAAGTTTTCCATCTAGTCCTGTTTCACACCTTCCAAACTTTTCAAAGCGATGAAACACTCGACAGTCGAGCTCCAGTCTTCTGAAAATTTTCAAAATGGCCAAAAATCAACTGAAAAACACGTCTTTTTATAATAACCTTATTGTCCGGTATCGACGTTCTCAAATTGATTTTGAAGGGGTCAAAGTTTCTTTTTTTCAGATTAACATGCGACACAATCGAAGACGAATTAGAGCGTAATCTGATGCAAATCGATCAAGGGCTTGAATCTGTAAAAACTTGGCTGTTGATATGCACGTTCAACTCAAAATACAGGAACCAAAACTGAACAGAATCGAAGAGCTGGTACGTGTCGCGTCCCAATATAGTCTTGCACTTTGTCCCGCAAATCATCTGCTTATCAGTTATTATGTTTTGGTTTTTTTCCAGACCGAAACAAACGATTGTGTCGTGGAAGGTGTCAACGACAAGGTGAAAAAACTGCTGCATTAAGCC</canonical>
            <polymorphic>TAAAGGAAGAAGTCTTGGAGTAAGAGTCAAACTTTTTATTGTCTCAAGTGGCCTGCATAGAAACAGTGTATTTCAGGAAAATGACGAGTCCGAAATTGCGTAGGAAGGAAGAGAGCAACACGGTGATTTTTAGGAGCTCTAATAAAAGAAGGGAGTCAACCGGGGATTTTATGAAAAGGTTTGTATTATATATGTACACTAACGGTCAATAAGATTTACAAAAACGTAACTTTCAGTTAATTTTTGACCGTTTCGACCATTTTCAGGAGTTTGGAGCTCGGTTGTCATATTCCCAATAACTCTGAACTTTTTGGAGGTAGTAAAACAGACCTAGATTGAAAATTTCGCATTCACAAAATTATTCAAAAATACCTAGTTTTTAAGCTATTTGCCGACTTCTCTAATAACTGTTTTCCGTCTTTTTCAGTACAAAACTGGACCAGAAAGGGGTGTCTTTCCGAAATCGGCATGAAAAACTAGCAACTATCAAAAAATTCTAWGAATACAAAGTTTTCCATCTAGTCCTGTTTCACACCTTCCAAACTTTTCAAAGCGATGAAACACTCGACAGTCGAGCTCCAGTCTTCTGAAAATTTTCAAAATGGCCAAAAATCAACTGAAAAACACGTCTTTTTATAATAACCTTATTGTCCGGTATCGACGTTCTCAAATTGATTTTGAAGGGGTCAAAGTTTCTTTTTTTCAGATTAACATGCGACACAATCGAAGACGAATTAGAGCGTAATCTGATGCAAATCGATCAAGGGCTTGAATCTGTAAAAACTTGGCTGTTGATATGCACGTTCAACTCAAAATACAGGAACCAAAACTGAACAGAATCGAAGAGCTGGTACGTGTCGCGTCCCAATATAGTCTTGCACTTTGTCCCGCAAATCATCTGCTTATCAGTTATTATGTTTTGGTTTTTTTCCAGACCGAAACAAACGATTGTGTCGTGGAAGGTGTCAACGACAAGGTGAAAAAACTGCTGCATTAAGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTTTATGAAAAGGTTTGTATT</pcr_primer_p1>
		<pcr_primer_p2>CAAAATCAATTTGAGAACGTC</pcr_primer_p2>
		<pcr_amplicon_size>517</pcr_amplicon_size>
		<canonical_amplicon>GGATTTTATGAAAAGGTTTGTATTATATATGTACACTAACGGTCAATAAGATTTACAAAAACGTAACTTTCAGTTAATTTTTGACCGTTTCGACCATTTTCAGGAGTTTGGAGCTCGGTTGTCATATTCCCAATAACTCTGAACTTTTTGGAGGTAGTAAAACAGACCTAGATTGAAAATTTCGCATTCACAAAATTATTCAAAAATACCTAGTTTTTAAGCTATTTGCCGACTTCTCTAATAACTGTTTTCCGTCTTTTTCAGTACAAAACTGGACCAGAAAGGGGTGTCTTTCCGAAATCGGCATGAAAAACTAGCAACTATCAAAAAATTCTATGAATACAAAGTTTTCCATCTAGTCCTGTTTCACACCTTCCAAACTTTTCAAAGCGATGAAACACTCGACAGTCGAGCTCCAGTCTTCTGAAAATTTTCAAAATGGCCAAAAATCAACTGAAAAACACGTCTTTTTATAATAACCTTATTGTCCGGTATCGACGTTCTCAAATTGATTTTG</canonical_amplicon>
		<polymorphic_amplicon>GGATTTTATGAAAAGGTTTGTATTATATATGTACACTAACGGTCAATAAGATTTACAAAAACGTAACTTTCAGTTAATTTTTGACCGTTTCGACCATTTTCAGGAGTTTGGAGCTCGGTTGTCATATTCCCAATAACTCTGAACTTTTTGGAGGTAGTAAAACAGACCTAGATTGAAAATTTCGCATTCACAAAATTATTCAAAAATACCTAGTTTTTAAGCTATTTGCCGACTTCTCTAATAACTGTTTTCCGTCTTTTTCAGTACAAAACTGGACCAGAAAGGGGTGTCTTTCCGAAATCGGCATGAAAAACTAGCAACTATCAAAAAATTCTAWGAATACAAAGTTTTCCATCTAGTCCTGTTTCACACCTTCCAAACTTTTCAAAGCGATGAAACACTCGACAGTCGAGCTCCAGTCTTCTGAAAATTTTCAAAATGGCCAAAAATCAACTGAAAAACACGTCTTTTTATAATAACCTTATTGTCCGGTATCGACGTTCTCAAATTGATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24901</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1147721</contig_pos>
        <strand></strand>
        <context>aaaattctaw[G/A]aatacaaagt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGTCTTTCCGAAATCGGCATGAAAAACTAGCAACTATCAAAAAATTCTAT</left_flank>
        <right_flank>AATACAAAGTTTTCCATCTAGTCCTGTTTCACACCTTCCAAACTTTTCAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGGAAGAAGTCTTGGAGTAAGAGTCAAACTTTTTATTGTCTCAAGTGGCCTGCATAGAAACAGTGTATTTCAGGAAAATGACGAGTCCGAAATTGCGTAGGAAGGAAGAGAGCAACACGGTGATTTTTAGGAGCTCTAATAAAAGAAGGGAGTCAACCGGGGATTTTATGAAAAGGTTTGTATTATATATGTACACTAACGGTCAATAAGATTTACAAAAACGTAACTTTCAGTTAATTTTTGACCGTTTCGACCATTTTCAGGAGTTTGGAGCTCGGTTGTCATATTCCCAATAACTCTGAACTTTTTGGAGGTAGTAAAACAGACCTAGATTGAAAATTTCGCATTCACAAAATTATTCAAAAATACCTAGTTTTTAAGCTATTTGCCGACTTCTCTAATAACTGTTTTCCGTCTTTTTCAGTACAAAACTGGACCAGAAAGGGGTGTCTTTCCGAAATCGGCATGAAAAACTAGCAACTATCAAAAAATTCTATGAATACAAAGTTTTCCATCTAGTCCTGTTTCACACCTTCCAAACTTTTCAAAGCGATGAAACACTCGACAGTCGAGCTCCAGTCTTCTGAAAATTTTCAAAATGGCCAAAAATCAACTGAAAAACACGTCTTTTTATAATAACCTTATTGTCCGGTATCGACGTTCTCAAATTGATTTTGAAGGGGTCAAAGTTTCTTTTTTTCAGATTAACATGCGACACAATCGAAGACGAATTAGAGCGTAATCTGATGCAAATCGATCAAGGGCTTGAATCTGTAAAAACTTGGCTGTTGATATGCACGTTCAACTCAAAATACAGGAACCAAAACTGAACAGAATCGAAGAGCTGGTACGTGTCGCGTCCCAATATAGTCTTGCACTTTGTCCCGCAAATCATCTGCTTATCAGTTATTATGTTTTGGTTTTTTTCCAGACCGAAACAAACGATTGTGTCGTGGAAGGTGTCAACGACAAGGTGAAAAAACTGCTGCATTAAGCCG</canonical>
            <polymorphic>AAAGGAAGAAGTCTTGGAGTAAGAGTCAAACTTTTTATTGTCTCAAGTGGCCTGCATAGAAACAGTGTATTTCAGGAAAATGACGAGTCCGAAATTGCGTAGGAAGGAAGAGAGCAACACGGTGATTTTTAGGAGCTCTAATAAAAGAAGGGAGTCAACCGGGGATTTTATGAAAAGGTTTGTATTATATATGTACACTAACGGTCAATAAGATTTACAAAAACGTAACTTTCAGTTAATTTTTGACCGTTTCGACCATTTTCAGGAGTTTGGAGCTCGGTTGTCATATTCCCAATAACTCTGAACTTTTTGGAGGTAGTAAAACAGACCTAGATTGAAAATTTCGCATTCACAAAATTATTCAAAAATACCTAGTTTTTAAGCTATTTGCCGACTTCTCTAATAACTGTTTTCCGTCTTTTTCAGTACAAAACTGGACCAGAAAGGGGTGTCTTTCCGAAATCGGCATGAAAAACTAGCAACTATCAAAAAATTCTATRAATACAAAGTTTTCCATCTAGTCCTGTTTCACACCTTCCAAACTTTTCAAAGCGATGAAACACTCGACAGTCGAGCTCCAGTCTTCTGAAAATTTTCAAAATGGCCAAAAATCAACTGAAAAACACGTCTTTTTATAATAACCTTATTGTCCGGTATCGACGTTCTCAAATTGATTTTGAAGGGGTCAAAGTTTCTTTTTTTCAGATTAACATGCGACACAATCGAAGACGAATTAGAGCGTAATCTGATGCAAATCGATCAAGGGCTTGAATCTGTAAAAACTTGGCTGTTGATATGCACGTTCAACTCAAAATACAGGAACCAAAACTGAACAGAATCGAAGAGCTGGTACGTGTCGCGTCCCAATATAGTCTTGCACTTTGTCCCGCAAATCATCTGCTTATCAGTTATTATGTTTTGGTTTTTTTCCAGACCGAAACAAACGATTGTGTCGTGGAAGGTGTCAACGACAAGGTGAAAAAACTGCTGCATTAAGCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTTTATGAAAAGGTTTGTATT</pcr_primer_p1>
		<pcr_primer_p2>CAAAATCAATTTGAGAACGTC</pcr_primer_p2>
		<pcr_amplicon_size>517</pcr_amplicon_size>
		<canonical_amplicon>GGATTTTATGAAAAGGTTTGTATTATATATGTACACTAACGGTCAATAAGATTTACAAAAACGTAACTTTCAGTTAATTTTTGACCGTTTCGACCATTTTCAGGAGTTTGGAGCTCGGTTGTCATATTCCCAATAACTCTGAACTTTTTGGAGGTAGTAAAACAGACCTAGATTGAAAATTTCGCATTCACAAAATTATTCAAAAATACCTAGTTTTTAAGCTATTTGCCGACTTCTCTAATAACTGTTTTCCGTCTTTTTCAGTACAAAACTGGACCAGAAAGGGGTGTCTTTCCGAAATCGGCATGAAAAACTAGCAACTATCAAAAAATTCTATGAATACAAAGTTTTCCATCTAGTCCTGTTTCACACCTTCCAAACTTTTCAAAGCGATGAAACACTCGACAGTCGAGCTCCAGTCTTCTGAAAATTTTCAAAATGGCCAAAAATCAACTGAAAAACACGTCTTTTTATAATAACCTTATTGTCCGGTATCGACGTTCTCAAATTGATTTTG</canonical_amplicon>
		<polymorphic_amplicon>GGATTTTATGAAAAGGTTTGTATTATATATGTACACTAACGGTCAATAAGATTTACAAAAACGTAACTTTCAGTTAATTTTTGACCGTTTCGACCATTTTCAGGAGTTTGGAGCTCGGTTGTCATATTCCCAATAACTCTGAACTTTTTGGAGGTAGTAAAACAGACCTAGATTGAAAATTTCGCATTCACAAAATTATTCAAAAATACCTAGTTTTTAAGCTATTTGCCGACTTCTCTAATAACTGTTTTCCGTCTTTTTCAGTACAAAACTGGACCAGAAAGGGGTGTCTTTCCGAAATCGGCATGAAAAACTAGCAACTATCAAAAAATTCTATRAATACAAAGTTTTCCATCTAGTCCTGTTTCACACCTTCCAAACTTTTCAAAGCGATGAAACACTCGACAGTCGAGCTCCAGTCTTCTGAAAATTTTCAAAATGGCCAAAAATCAACTGAAAAACACGTCTTTTTATAATAACCTTATTGTCCGGTATCGACGTTCTCAAATTGATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24902</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1147745</contig_pos>
        <strand></strand>
        <context>ccatctagtc[C/G]tgtttcacac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AACTAGCAACTATCAAAAAATTCTATGAATACAAAGTTTTCCATCTAGTC</left_flank>
        <right_flank>TGTTTCACACCTTCCAAACTTTTCAAAGCGATGAAACACTCGACAGTCGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCAAACTTTTTATTGTCTCAAGTGGCCTGCATAGAAACAGTGTATTTCAGGAAAATGACGAGTCCGAAATTGCGTAGGAAGGAAGAGAGCAACACGGTGATTTTTAGGAGCTCTAATAAAAGAAGGGAGTCAACCGGGGATTTTATGAAAAGGTTTGTATTATATATGTACACTAACGGTCAATAAGATTTACAAAAACGTAACTTTCAGTTAATTTTTGACCGTTTCGACCATTTTCAGGAGTTTGGAGCTCGGTTGTCATATTCCCAATAACTCTGAACTTTTTGGAGGTAGTAAAACAGACCTAGATTGAAAATTTCGCATTCACAAAATTATTCAAAAATACCTAGTTTTTAAGCTATTTGCCGACTTCTCTAATAACTGTTTTCCGTCTTTTTCAGTACAAAACTGGACCAGAAAGGGGTGTCTTTCCGAAATCGGCATGAAAAACTAGCAACTATCAAAAAATTCTATGAATACAAAGTTTTCCATCTAGTCCTGTTTCACACCTTCCAAACTTTTCAAAGCGATGAAACACTCGACAGTCGAGCTCCAGTCTTCTGAAAATTTTCAAAATGGCCAAAAATCAACTGAAAAACACGTCTTTTTATAATAACCTTATTGTCCGGTATCGACGTTCTCAAATTGATTTTGAAGGGGTCAAAGTTTCTTTTTTTCAGATTAACATGCGACACAATCGAAGACGAATTAGAGCGTAATCTGATGCAAATCGATCAAGGGCTTGAATCTGTAAAAACTTGGCTGTTGATATGCACGTTCAACTCAAAATACAGGAACCAAAACTGAACAGAATCGAAGAGCTGGTACGTGTCGCGTCCCAATATAGTCTTGCACTTTGTCCCGCAAATCATCTGCTTATCAGTTATTATGTTTTGGTTTTTTTCCAGACCGAAACAAACGATTGTGTCGTGGAAGGTGTCAACGACAAGGTGAAAAAACTGCTGCATTAAGCCGTGTTGGCCAAAAAAGAGCATTCCA</canonical>
            <polymorphic>GTCAAACTTTTTATTGTCTCAAGTGGCCTGCATAGAAACAGTGTATTTCAGGAAAATGACGAGTCCGAAATTGCGTAGGAAGGAAGAGAGCAACACGGTGATTTTTAGGAGCTCTAATAAAAGAAGGGAGTCAACCGGGGATTTTATGAAAAGGTTTGTATTATATATGTACACTAACGGTCAATAAGATTTACAAAAACGTAACTTTCAGTTAATTTTTGACCGTTTCGACCATTTTCAGGAGTTTGGAGCTCGGTTGTCATATTCCCAATAACTCTGAACTTTTTGGAGGTAGTAAAACAGACCTAGATTGAAAATTTCGCATTCACAAAATTATTCAAAAATACCTAGTTTTTAAGCTATTTGCCGACTTCTCTAATAACTGTTTTCCGTCTTTTTCAGTACAAAACTGGACCAGAAAGGGGTGTCTTTCCGAAATCGGCATGAAAAACTAGCAACTATCAAAAAATTCTATGAATACAAAGTTTTCCATCTAGTCSTGTTTCACACCTTCCAAACTTTTCAAAGCGATGAAACACTCGACAGTCGAGCTCCAGTCTTCTGAAAATTTTCAAAATGGCCAAAAATCAACTGAAAAACACGTCTTTTTATAATAACCTTATTGTCCGGTATCGACGTTCTCAAATTGATTTTGAAGGGGTCAAAGTTTCTTTTTTTCAGATTAACATGCGACACAATCGAAGACGAATTAGAGCGTAATCTGATGCAAATCGATCAAGGGCTTGAATCTGTAAAAACTTGGCTGTTGATATGCACGTTCAACTCAAAATACAGGAACCAAAACTGAACAGAATCGAAGAGCTGGTACGTGTCGCGTCCCAATATAGTCTTGCACTTTGTCCCGCAAATCATCTGCTTATCAGTTATTATGTTTTGGTTTTTTTCCAGACCGAAACAAACGATTGTGTCGTGGAAGGTGTCAACGACAAGGTGAAAAAACTGCTGCATTAAGCCGTGTTGGCCAAAAAAGAGCATTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTTTATGAAAAGGTTTGTATT</pcr_primer_p1>
		<pcr_primer_p2>CAAAATCAATTTGAGAACGTC</pcr_primer_p2>
		<pcr_amplicon_size>517</pcr_amplicon_size>
		<canonical_amplicon>GGATTTTATGAAAAGGTTTGTATTATATATGTACACTAACGGTCAATAAGATTTACAAAAACGTAACTTTCAGTTAATTTTTGACCGTTTCGACCATTTTCAGGAGTTTGGAGCTCGGTTGTCATATTCCCAATAACTCTGAACTTTTTGGAGGTAGTAAAACAGACCTAGATTGAAAATTTCGCATTCACAAAATTATTCAAAAATACCTAGTTTTTAAGCTATTTGCCGACTTCTCTAATAACTGTTTTCCGTCTTTTTCAGTACAAAACTGGACCAGAAAGGGGTGTCTTTCCGAAATCGGCATGAAAAACTAGCAACTATCAAAAAATTCTATGAATACAAAGTTTTCCATCTAGTCCTGTTTCACACCTTCCAAACTTTTCAAAGCGATGAAACACTCGACAGTCGAGCTCCAGTCTTCTGAAAATTTTCAAAATGGCCAAAAATCAACTGAAAAACACGTCTTTTTATAATAACCTTATTGTCCGGTATCGACGTTCTCAAATTGATTTTG</canonical_amplicon>
		<polymorphic_amplicon>GGATTTTATGAAAAGGTTTGTATTATATATGTACACTAACGGTCAATAAGATTTACAAAAACGTAACTTTCAGTTAATTTTTGACCGTTTCGACCATTTTCAGGAGTTTGGAGCTCGGTTGTCATATTCCCAATAACTCTGAACTTTTTGGAGGTAGTAAAACAGACCTAGATTGAAAATTTCGCATTCACAAAATTATTCAAAAATACCTAGTTTTTAAGCTATTTGCCGACTTCTCTAATAACTGTTTTCCGTCTTTTTCAGTACAAAACTGGACCAGAAAGGGGTGTCTTTCCGAAATCGGCATGAAAAACTAGCAACTATCAAAAAATTCTATGAATACAAAGTTTTCCATCTAGTCSTGTTTCACACCTTCCAAACTTTTCAAAGCGATGAAACACTCGACAGTCGAGCTCCAGTCTTCTGAAAATTTTCAAAATGGCCAAAAATCAACTGAAAAACACGTCTTTTTATAATAACCTTATTGTCCGGTATCGACGTTCTCAAATTGATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24903</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1194268</contig_pos>
        <strand>+</strand>
        <context>CACACACACG[C/T]AGGGGCATCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAGGATGAGACAAAAACAGAAAAATATGGGTTGCTGGCACACACACG</left_flank>
        <right_flank>AGGGGCATCCACACACACACATAAAGGAGGACGACATTACTGGAAAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACCTCTTCCATACGGACGGCTGCAAGAATCCTTTTAGGGGCAATCTTTTTTGAAAATCACTAACTTGGATTTGGCTGCAAATAACTCTCTATGGAAGAGAGAAGACGGCGGGTATGGTCCTCGGTCTTATCGGCACGTTTGAGAAGATTCTCGAAATGTGAGTCTAGTTCGGTACGTTCGGCTTTCAGAAAAGTTTCTTCGGTGAGCTGAAACAAGAAAAATGAATTTCTGAGAGCTATAGGAGTCCATATAAGCCCTAACTGAAGAAATTGAACTTAGAATTCCAAAAAAGAAAACCCGCCAATTACAACGAACCTGCTTAGCTCTGCTGAAGAATCCTCCAGCATCACTGGCAATCTTTTTGAAGTTGAAATCCATGGCTGAGACGTCGTCACACTAATCTGAAAGGAAGTTTTAAAACTGAGGAAAAAATCTCGGGTCGAGGGAAAAAAAGGATGAGACAAAAACAGAAAAATATGGGTTGCTGGCACACACACGTAGGGGCATCCACACACACACATAAAGGAGGACGACATTACTGGAAAAAAACGGGGTGAATAAGAAGAAGAAGAAGAAGAAGACGATGGGCAATGTCGGTGTTGGTGGGAGGGGAGGAAAGGGCCCGACTATGAGGCAGGCACAAAAAATCGATGCGCGACTGCGCGTGCCGTTTTAAAGAGAAAAACGGGAAACGAAAAGTGACGGAACAAGTGGTGAAGAAGACGAATTTTTGAAAAAAAAAAACGAAAAAAGATGCGTGTACAACAAAAAACCGCAAGAGGTCGTTCATCTTTCTCAACATTCGTGCATCCATTTTTTTCTCCTTTTGAGCACCAATTCAAGATGTTACATTTTGTGAGAAACGGGGTTGTTATACATGCAATCAAATCTGTGAGAAGTGCAGTTTTTATTCGATTTCAAGTTTCTGAATAGCATATTAATGAGGAAAAACATTCCGACAAGCACTTTTTTGGTGCTTGGCAATAACTAAAATTTCGT</canonical>
            <polymorphic>GACCTCTTCCATACGGACGGCTGCAAGAATCCTTTTAGGGGCAATCTTTTTTGAAAATCACTAACTTGGATTTGGCTGCAAATAACTCTCTATGGAAGAGAGAAGACGGCGGGTATGGTCCTCGGTCTTATCGGCACGTTTGAGAAGATTCTCGAAATGTGAGTCTAGTTCGGTACGTTCGGCTTTCAGAAAAGTTTCTTCGGTGAGCTGAAACAAGAAAAATGAATTTCTGAGAGCTATAGGAGTCCATATAAGCCCTAACTGAAGAAATTGAACTTAGAATTCCAAAAAAGAAAACCCGCCAATTACAACGAACCTGCTTAGCTCTGCTGAAGAATCCTCCAGCATCACTGGCAATCTTTTTGAAGTTGAAATCCATGGCTGAGACGTCGTCACACTAATCTGAAAGGAAGTTTTAAAACTGAGGAAAAAATCTCGGGTCGAGGGAAAAAAAGGATGAGACAAAAACAGAAAAATATGGGTTGCTGGCACACACACGYAGGGGCATCCACACACACACATAAAGGAGGACGACATTACTGGAAAAAAACGGGGTGAATAAGAAGAAGAAGAAGAAGAAGACGATGGGCAATGTCGGTGTTGGTGGGAGGGGAGGAAAGGGCCCGACTATGAGGCAGGCACAAAAAATCGATGCGCGACTGCGCGTGCCGTTTTAAAGAGAAAAACGGGAAACGAAAAGTGACGGAACAAGTGGTGAAGAAGACGAATTTTTGAAAAAAAAAAACGAAAAAAGATGCGTGTACAACAAAAAACCGCAAGAGGTCGTTCATCTTTCTCAACATTCGTGCATCCATTTTTTTCTCCTTTTGAGCACCAATTCAAGATGTTACATTTTGTGAGAAACGGGGTTGTTATACATGCAATCAAATCTGTGAGAAGTGCAGTTTTTATTCGATTTCAAGTTTCTGAATAGCATATTAATGAGGAAAAACATTCCGACAAGCACTTTTTTGGTGCTTGGCAATAACTAAAATTTCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>503 212 136 110 39</canonical_bands>
                <polymorphic_bands>613 212 136 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCACACTAATCTGAAAGGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TCCCGTTTTTCTCTTTAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>299</pcr_amplicon_size>
		<canonical_amplicon>TCACACTAATCTGAAAGGAAGTTTTAAAACTGAGGAAAAAATCTCGGGTCGAGGGAAAAAAAGGATGAGACAAAAACAGAAAAATATGGGTTGCTGGCACACACACGTAGGGGCATCCACACACACACATAAAGGAGGACGACATTACTGGAAAAAAACGGGGTGAATAAGAAGAAGAAGAAGAAGAAGACGATGGGCAATGTCGGTGTTGGTGGGAGGGGAGGAAAGGGCCCGACTATGAGGCAGGCACAAAAAATCGATGCGCGACTGCGCGTGCCGTTTTAAAGAGAAAAACGGGA</canonical_amplicon>
		<polymorphic_amplicon>TCACACTAATCTGAAAGGAAGTTTTAAAACTGAGGAAAAAATCTCGGGTCGAGGGAAAAAAAGGATGAGACAAAAACAGAAAAATATGGGTTGCTGGCACACACACGYAGGGGCATCCACACACACACATAAAGGAGGACGACATTACTGGAAAAAAACGGGGTGAATAAGAAGAAGAAGAAGAAGAAGACGATGGGCAATGTCGGTGTTGGTGGGAGGGGAGGAAAGGGCCCGACTATGAGGCAGGCACAAAAAATCGATGCGCGACTGCGCGTGCCGTTTTAAAGAGAAAAACGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24904</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1227233</contig_pos>
        <strand></strand>
        <context>ACGATTGATA[G/A]CTCTAGAGGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAATTTGTGTGCGTTAGAAGAAGTTTAAAAATGGACACGAACGATTGATA</left_flank>
        <right_flank>CTCTAGAGGCATATAACGATGTTACGATTCAAAAAACAGGGAAAAATAGG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGGCCCTTACACTTTCAATTATCTCGATTCTTCAAGAAGATACCAAAAAGTGGTCTACATACAAAATACTTTTGCCATTCTGATAATCAAGTTATCTGTTGAGAACTTTAAAATAATAAAAAGTCTTACAAGAATCGAGAAAAATTGGCTCAATGTTAATAGTAAAGCATACTTGCAAAATCAGCGCCCGGGTTCTTCAATTTGAAAAAAAAATTGTAATTTCAGAAACATTTTCACATTTTTTTTTGAAAATTTTTTAATGGACATTTTTTATCTTGAAAAGTGTTTTACTTGACAGAAAAATCGTCCATTTTTTCAGTTGACCCCGAAAATTTTTTCAGAAAACCCAGGCCTGGCTGGGCCGAGCCAGGCCCTGGCCGGGCCAGGCCCTGTTTTGCCGGTTTCCTTGAATTATAGGAATACAAACCAAAAAAATCAGAGAGAAAGGAATTTGTGTGCGTTAGAAGAAGTTTAAAAATGGACACGAACGATTGATAGCTCTAGAGGCATATAACGATGTTACGATTCAAAAAACAGGGAAAAATAGGGGCTTGATCAGCAAAATATGATTGTTTGTGTGCTAACATAACATATGAATCAGAAGGTATACGGTATCAAGATTAATAATATTAATAATAAATTGAACAATAATATATTGAGATCATTGAAATAAAAAACAAGCGTCTTACAATGTTGCGCGTCTAATGAATGAGAAAAGAAGAGGAGCCAGAAGAAAAAAACAGATGTCTTACAAAATGAAGGAGAAGAAAGGGGCGCCTAATGAATTATGAGTTCGGACCGATGCGACATGACCTCGCCTTTTGTTTATATGTAGTTTTTTTTTGTCTTTTCTGGAGACATTCAAAAATAGTCTCTACTTTCTCAAGGATGGTAAGGCCTTCACACAGACACAGCAAAAATGTGTCGGCGGATTTCTTCTCAGAAGAGCGAAAACTGTTTATTTTGGCATAAACGTGTTTAGCATCGCAACCTTGACG</canonical>
            <polymorphic>TGAGGCCCTTACACTTTCAATTATCTCGATTCTTCAAGAAGATACCAAAAAGTGGTCTACATACAAAATACTTTTGCCATTCTGATAATCAAGTTATCTGTTGAGAACTTTAAAATAATAAAAAGTCTTACAAGAATCGAGAAAAATTGGCTCAATGTTAATAGTAAAGCATACTTGCAAAATCAGCGCCCGGGTTCTTCAATTTGAAAAAAAAATTGTAATTTCAGAAACATTTTCACATTTTTTTTTGAAAATTTTTTAATGGACATTTTTTATCTTGAAAAGTGTTTTACTTGACAGAAAAATCGTCCATTTTTTCAGTTGACCCCGAAAATTTTTTCAGAAAACCCAGGCCTGGCTGGGCCGAGCCAGGCCCTGGCCGGGCCAGGCCCTGTTTTGCCGGTTTCCTTGAATTATAGGAATACAAACCAAAAAAATCAGAGAGAAAGGAATTTGTGTGCGTTAGAAGAAGTTTAAAAATGGACACGAACGATTGATARCTCTAGAGGCATATAACGATGTTACGATTCAAAAAACAGGGAAAAATAGGGGCTTGATCAGCAAAATATGATTGTTTGTGTGCTAACATAACATATGAATCAGAAGGTATACGGTATCAAGATTAATAATATTAATAATAAATTGAACAATAATATATTGAGATCATTGAAATAAAAAACAAGCGTCTTACAATGTTGCGCGTCTAATGAATGAGAAAAGAAGAGGAGCCAGAAGAAAAAAACAGATGTCTTACAAAATGAAGGAGAAGAAAGGGGCGCCTAATGAATTATGAGTTCGGACCGATGCGACATGACCTCGCCTTTTGTTTATATGTAGTTTTTTTTTGTCTTTTCTGGAGACATTCAAAAATAGTCTCTACTTTCTCAAGGATGGTAAGGCCTTCACACAGACACAGCAAAAATGTGTCGGCGGATTTCTTCTCAGAAGAGCGAAAACTGTTTATTTTGGCATAAACGTGTTTAGCATCGCAACCTTGACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>442 323 183 52</canonical_bands>
                <polymorphic_bands>442 375 183</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>203 176 171 145 111 101 52 6 5 5 5 5 5 5 5</canonical_bands>
                <polymorphic_bands>203 176 171 163 145 101 6 5 5 5 5 5 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTTGTGTGCGTTAGAAGA</pcr_primer_p1>
		<pcr_primer_p2>AACATTGTAAGACGCTTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAATTTGTGTGCGTTAGAAGAAGTTTAAAAATGGACACGAACGATTGATAGCTCTAGAGGCATATAACGATGTTACGATTCAAAAAACAGGGAAAAATAGGGGCTTGATCAGCAAAATATGATTGTTTGTGTGCTAACATAACATATGAATCAGAAGGTATACGGTATCAAGATTAATAATATTAATAATAAATTGAACAATAATATATTGAGATCATTGAAATAAAAAACAAGCGTCTTACAATGTT</canonical_amplicon>
		<polymorphic_amplicon>GAATTTGTGTGCGTTAGAAGAAGTTTAAAAATGGACACGAACGATTGATARCTCTAGAGGCATATAACGATGTTACGATTCAAAAAACAGGGAAAAATAGGGGCTTGATCAGCAAAATATGATTGTTTGTGTGCTAACATAACATATGAATCAGAAGGTATACGGTATCAAGATTAATAATATTAATAATAAATTGAACAATAATATATTGAGATCATTGAAATAAAAAACAAGCGTCTTACAATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24905</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1227511</contig_pos>
        <strand></strand>
        <context>AGAAAGGGGC[G/T]CCTAATGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCCAGAAGAAAAAAACAGATGTCTTACAAAATGAAGGAGAAGAAAGGGGC</left_flank>
        <right_flank>CCTAATGAATTATGAGTTCGGACCGATGCGACATGACCTCGCCTTTTGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAAAGTGTTTTACTTGACAGAAAAATCGTCCATTTTTTCAGTTGACCCCGAAAATTTTTTCAGAAAACCCAGGCCTGGCTGGGCCGAGCCAGGCCCTGGCCGGGCCAGGCCCTGTTTTGCCGGTTTCCTTGAATTATAGGAATACAAACCAAAAAAATCAGAGAGAAAGGAATTTGTGTGCGTTAGAAGAAGTTTAAAAATGGACACGAACGATTGATAGCTCTAGAGGCATATAACGATGTTACGATTCAAAAAACAGGGAAAAATAGGGGCTTGATCAGCAAAATATGATTGTTTGTGTGCTAACATAACATATGAATCAGAAGGTATACGGTATCAAGATTAATAATATTAATAATAAATTGAACAATAATATATTGAGATCATTGAAATAAAAAACAAGCGTCTTACAATGTTGCGCGTCTAATGAATGAGAAAAGAAGAGGAGCCAGAAGAAAAAAACAGATGTCTTACAAAATGAAGGAGAAGAAAGGGGCGCCTAATGAATTATGAGTTCGGACCGATGCGACATGACCTCGCCTTTTGTTTATATGTAGTTTTTTTTTGTCTTTTCTGGAGACATTCAAAAATAGTCTCTACTTTCTCAAGGATGGTAAGGCCTTCACACAGACACAGCAAAAATGTGTCGGCGGATTTCTTCTCAGAAGAGCGAAAACTGTTTATTTTGGCATAAACGTGTTTAGCATCGCAACCTTGACGACGAAGGTGGGATGAAAAAAAAAACAGAACTACAAGGATGAGTCAGGTGGCGTTCAGACTGTTTCTCTCCTCTTTTCCAAACAACACGTAGATGTGAAGTTTAAGAAGAAGAATAAGAATGAGAAAAAGATTAAGCACGCATATTGCCTCGAGACGAACATCATGTACATGCTTGAATAGACCGAACTGAACTGTAATTGTGCGGTGAGGTGAAAATGAAAACATACAGATCAAGTCTGAGAGAAGAGATTGAGAAAACAGATGTGAGATTTGTTTTG</canonical>
            <polymorphic>TGAAAAGTGTTTTACTTGACAGAAAAATCGTCCATTTTTTCAGTTGACCCCGAAAATTTTTTCAGAAAACCCAGGCCTGGCTGGGCCGAGCCAGGCCCTGGCCGGGCCAGGCCCTGTTTTGCCGGTTTCCTTGAATTATAGGAATACAAACCAAAAAAATCAGAGAGAAAGGAATTTGTGTGCGTTAGAAGAAGTTTAAAAATGGACACGAACGATTGATAGCTCTAGAGGCATATAACGATGTTACGATTCAAAAAACAGGGAAAAATAGGGGCTTGATCAGCAAAATATGATTGTTTGTGTGCTAACATAACATATGAATCAGAAGGTATACGGTATCAAGATTAATAATATTAATAATAAATTGAACAATAATATATTGAGATCATTGAAATAAAAAACAAGCGTCTTACAATGTTGCGCGTCTAATGAATGAGAAAAGAAGAGGAGCCAGAAGAAAAAAACAGATGTCTTACAAAATGAAGGAGAAGAAAGGGGCKCCTAATGAATTATGAGTTCGGACCGATGCGACATGACCTCGCCTTTTGTTTATATGTAGTTTTTTTTTGTCTTTTCTGGAGACATTCAAAAATAGTCTCTACTTTCTCAAGGATGGTAAGGCCTTCACACAGACACAGCAAAAATGTGTCGGCGGATTTCTTCTCAGAAGAGCGAAAACTGTTTATTTTGGCATAAACGTGTTTAGCATCGCAACCTTGACGACGAAGGTGGGATGAAAAAAAAAACAGAACTACAAGGATGAGTCAGGTGGCGTTCAGACTGTTTCTCTCCTCTTTTCCAAACAACACGTAGATGTGAAGTTTAAGAAGAAGAATAAGAATGAGAAAAAGATTAAGCACGCATATTGCCTCGAGACGAACATCATGTACATGCTTGAATAGACCGAACTGAACTGTAATTGTGCGGTGAGGTGAAAATGAAAACATACAGATCAAGTCTGAGAGAAGAGATTGAGAAAACAGATGTGAGATTTGTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 422 78</canonical_bands>
                <polymorphic_bands>578 422</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCGCC</site>
                <isoschizomers>
                    <enzyme>BbeI</enzyme>
                    <enzyme>EgeI</enzyme>
                    <enzyme>EheI</enzyme>
                    <enzyme>KasI</enzyme>
                    <enzyme>Mly113I</enzyme>
                    <enzyme>NarI</enzyme>
                    <enzyme>SfoI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACAAGCGTCTTACAATGTT</pcr_primer_p1>
		<pcr_primer_p2>ACATTTTTGCTGTGTCTGTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAACAAGCGTCTTACAATGTTGCGCGTCTAATGAATGAGAAAAGAAGAGGAGCCAGAAGAAAAAAACAGATGTCTTACAAAATGAAGGAGAAGAAAGGGGCGCCTAATGAATTATGAGTTCGGACCGATGCGACATGACCTCGCCTTTTGTTTATATGTAGTTTTTTTTTGTCTTTTCTGGAGACATTCAAAAATAGTCTCTACTTTCTCAAGGATGGTAAGGCCTTCACACAGACACAGCAAAAATGT</canonical_amplicon>
		<polymorphic_amplicon>AAAACAAGCGTCTTACAATGTTGCGCGTCTAATGAATGAGAAAAGAAGAGGAGCCAGAAGAAAAAAACAGATGTCTTACAAAATGAAGGAGAAGAAAGGGGCKCCTAATGAATTATGAGTTCGGACCGATGCGACATGACCTCGCCTTTTGTTTATATGTAGTTTTTTTTTGTCTTTTCTGGAGACATTCAAAAATAGTCTCTACTTTCTCAAGGATGGTAAGGCCTTCACACAGACACAGCAAAAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24906</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1265926</contig_pos>
        <strand>+</strand>
        <context>GAAATGTGGT[C/T]AAAAAACTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGACAAATGGGAAGAGAAAATATACCTATTAGTTAGTTGAAATGTGGT</left_flank>
        <right_flank>AAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGGGCAGCAATTTTCACATGATGCGTATTTTGTGTATTCAGAGGCTGATGGGGATGTTGTACTTTGATCGGTTTGTGATGCGACGATTCCAGAGGTAGACCAATTTTATGATTTTTGTACGATTCTTGTTGCATTGATGTCAGCATACGAGTCGAGTCGAAACTGAAATGAGGAAATTTCATCGTCGTTGTATATTCTTCGTAATTTAGGTACAACGAAGATTTTGATAGAAAACGAACACAACTTTCTCCCGAAATATAACACAAAAGAACAATGAAAAGAAAAAAGAGGGGACTCGGTAAAACTGTCTTTGCGCAATCCTCGGCCGCGGAGATCCGTCGTTGTGTCGTTGTGTCTGCGCGCTCTCGTATCTAATGCACTCTCCTCCCTAACCTAATTTGGCATGGTCCTCTTCGTTTAGTTGTTAGCAAGTATATTCGCATCTGATAATGACAAATGGGAAGAGAAAATATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTT</canonical>
            <polymorphic>AGGGGCAGCAATTTTCACATGATGCGTATTTTGTGTATTCAGAGGCTGATGGGGATGTTGTACTTTGATCGGTTTGTGATGCGACGATTCCAGAGGTAGACCAATTTTATGATTTTTGTACGATTCTTGTTGCATTGATGTCAGCATACGAGTCGAGTCGAAACTGAAATGAGGAAATTTCATCGTCGTTGTATATTCTTCGTAATTTAGGTACAACGAAGATTTTGATAGAAAACGAACACAACTTTCTCCCGAAATATAACACAAAAGAACAATGAAAAGAAAAAAGAGGGGACTCGGTAAAACTGTCTTTGCGCAATCCTCGGCCGCGGAGATCCGTCGTTGTGTCGTTGTGTCTGCGCGCTCTCGTATCTAATGCACTCTCCTCCCTAACCTAATTTGGCATGGTCCTCTTCGTTTAGTTGTTAGCAAGTATATTCGCATCTGATAATGACAAATGGGAAGAGAAAATATACCTATTAGTTAGTTGAAATGTGGTYAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAATGACAAATGGGAAGAGAA</pcr_primer_p1>
		<pcr_primer_p2>GATTTTGTGAAATTTGCTTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATAATGACAAATGGGAAGAGAAAATATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATC</canonical_amplicon>
		<polymorphic_amplicon>ATAATGACAAATGGGAAGAGAAAATATACCTATTAGTTAGTTGAAATGTGGTYAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24907</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1266354</contig_pos>
        <strand>+</strand>
        <context>TGGATTCAGG[C/T]GGAATAGTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGG</left_flank>
        <right_flank>GGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAAGTATATTCGCATCTGATAATGACAAATGGGAAGAGAAAATATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATTTCATCATCTATCTCTGATGAACTCACTTTTTCTGATAAATTAAGTGTGTCTATGTTCCTCGCGTCGAACAGGACCAGTCGAAGATTGAGTTTTGCTGTATTCGAATGATTTTTGTTGAACAGTCTCTGACGTTGTCGAGGTCGAATTAGTCATAAAGTCATTATGCGGCACAACTGTATGTTGGCTTGAAGATGATACATCCATTGGAATGAACCCGAGCTCTTGACTGAAAAATTCATATTTTTTAGAGTTCCTATATTTTTTTTCTTTCGAAAAATGTTCGAGTACCTGAGACAGTCCATTGTAAAACAT</canonical>
            <polymorphic>GCAAGTATATTCGCATCTGATAATGACAAATGGGAAGAGAAAATATACCTATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGYGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATTTCATCATCTATCTCTGATGAACTCACTTTTTCTGATAAATTAAGTGTGTCTATGTTCCTCGCGTCGAACAGGACCAGTCGAAGATTGAGTTTTGCTGTATTCGAATGATTTTTGTTGAACAGTCTCTGACGTTGTCGAGGTCGAATTAGTCATAAAGTCATTATGCGGCACAACTGTATGTTGGCTTGAAGATGATACATCCATTGGAATGAACCCGAGCTCTTGACTGAAAAATTCATATTTTTTAGAGTTCCTATATTTTTTTTCTTTCGAAAAATGTTCGAGTACCTGAGACAGTCCATTGTAAAACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATAGAACGTACAGTTGAAGGAT</pcr_primer_p1>
		<pcr_primer_p2>AATAAAGGCATGTTTTTCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATT</canonical_amplicon>
		<polymorphic_amplicon>CATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGYGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24908</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1266403</contig_pos>
        <strand>+</strand>
        <context>AATKTWAAGA[A/G]WGTTAAAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGA</left_flank>
        <right_flank>AGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAA</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATTTCATCATCTATCTCTGATGAACTCACTTTTTCTGATAAATTAAGTGTGTCTATGTTCCTCGCGTCGAACAGGACCAGTCGAAGATTGAGTTTTGCTGTATTCGAATGATTTTTGTTGAACAGTCTCTGACGTTGTCGAGGTCGAATTAGTCATAAAGTCATTATGCGGCACAACTGTATGTTGGCTTGAAGATGATACATCCATTGGAATGAACCCGAGCTCTTGACTGAAAAATTCATATTTTTTAGAGTTCCTATATTTTTTTTCTTTCGAAAAATGTTCGAGTACCTGAGACAGTCCATTGTAAAACATTAAAATATTAGAATATGGTTAAAAGACAAAATGTTCATCACCATATCGA</canonical>
            <polymorphic>TATTAGTTAGTTGAAATGTGGTAAAAAAACTAATCAGTTCACCTTGCACCACTTATATATATTTTCTTTTATCAAAAACTCATCACCACCATCGTTCACCCGGTCAGCAGAAAAGTGTGTATAATTTCTAGCAGTTTTGTATGATGTGTCAATCAGGCTTCTAGAACAACTTATGAACAAATAGATAAGTATGACATACAAGCAAATTTCACAAAATCATAACCCTGACAAAACCGTTGGAGTGATGATTTGGTTTTTTGGTGTTGGAAACAATATAGAATACAAAAGGCAAGATATATAAAATAACGGAAGTAACGAAAAATTTAAAGTCACAGGAGACACGAATTTCAGCAGAAAATCGTTACGAGATAACAATGGAGAGTTTTGCACATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGARAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATTTCATCATCTATCTCTGATGAACTCACTTTTTCTGATAAATTAAGTGTGTCTATGTTCCTCGCGTCGAACAGGACCAGTCGAAGATTGAGTTTTGCTGTATTCGAATGATTTTTGTTGAACAGTCTCTGACGTTGTCGAGGTCGAATTAGTCATAAAGTCATTATGCGGCACAACTGTATGTTGGCTTGAAGATGATACATCCATTGGAATGAACCCGAGCTCTTGACTGAAAAATTCATATTTTTTAGAGTTCCTATATTTTTTTTCTTTCGAAAAATGTTCGAGTACCTGAGACAGTCCATTGTAAAACATTAAAATATTAGAATATGGTTAAAAGACAAAATGTTCATCACCATATCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATAGAACGTACAGTTGAAGGAT</pcr_primer_p1>
		<pcr_primer_p2>AATAAAGGCATGTTTTTCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGAGAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATT</canonical_amplicon>
		<polymorphic_amplicon>CATAGAACGTACAGTTGAAGGATTAACTAAAGTCAGAATTAAAAAGAAACCTGGATTCAGGCGGAATAGTAACATGGTTTGGGGTTAGAGAGGGAATATGAATGTTAAGARAGTTAAAAAGATTTGAAGAATTTTAAATGTCCTTGATTGTCCTGCAGGAAATTGGGCCTTTATGAAGATATGATAAACGTCTCAAGTACACGTCACGTTGTAGCCGGGAAAGTGGAGCACTGAAAAACATGCCTTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24909</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1267672</contig_pos>
        <strand>+</strand>
        <context>GAGAAATTCC[C/T]TTTTTTTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCC</left_flank>
        <right_flank>TTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATTTTGCTAAAACTGATTCATTAATCTCACTTTTCAGTAAGTTCCAAAGGCACTTTAATTTTATACTTGAGAAGCATTTTCAGCTTGCTCTCCAACTCCACAGTAGCATCTCGCAAGCGTTCATCGAATATATGTTTGAACTTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCTTTATAAAGATCCCCAAGACTTCATGGGATCCTTAGCATGAACGAAAAACAACTCACAGCATGGAAGGGCTAGTGCTTGGAAGATAACTCGTGATTGATCCGGTGTTGGAATATAGTATATTGCCTAGGGATGCAAATCTGAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAAAATTGCTAAAATGATTCGTCAAACTTACTGTTCAGTGAGCTCCAAAGGAACTTTCA</canonical>
            <polymorphic>CAAATTTTGCTAAAACTGATTCATTAATCTCACTTTTCAGTAAGTTCCAAAGGCACTTTAATTTTATACTTGAGAAGCATTTTCAGCTTGCTCTCCAACTCCACAGTAGCATCTCGCAAGCGTTCATCGAATATATGTTTGAACTTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCYTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCTTTATAAAGATCCCCAAGACTTCATGGGATCCTTAGCATGAACGAAAAACAACTCACAGCATGGAAGGGCTAGTGCTTGGAAGATAACTCGTGATTGATCCGGTGTTGGAATATAGTATATTGCCTAGGGATGCAAATCTGAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAAAATTGCTAAAATGATTCGTCAAACTTACTGTTCAGTGAGCTCCAAAGGAACTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTGCTAACATTTCTCTGAAT</pcr_primer_p1>
		<pcr_primer_p2>TGCTTACTGTTATAAAATGGACTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCA</canonical_amplicon>
		<polymorphic_amplicon>GAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCYTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24910</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1267772</contig_pos>
        <strand></strand>
        <context>acattttctg[G/T]gtttcgagaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTG</left_flank>
        <right_flank>GTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACAGTAGCATCTCGCAAGCGTTCATCGAATATATGTTTGAACTTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCTTTATAAAGATCCCCAAGACTTCATGGGATCCTTAGCATGAACGAAAAACAACTCACAGCATGGAAGGGCTAGTGCTTGGAAGATAACTCGTGATTGATCCGGTGTTGGAATATAGTATATTGCCTAGGGATGCAAATCTGAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAAAATTGCTAAAATGATTCGTCAAACTTACTGTTCAGTGAGCTCCAAAGGAACTTTCATTTTATACTCAAGAAGCATTTTCAGCTTGATTTCCAACTCCACATTAACATCTTTCAAACGTTCATCAAACAATGTGTTGAAGTTCTTCTTCAATCTGGA</canonical>
            <polymorphic>CCACAGTAGCATCTCGCAAGCGTTCATCGAATATATGTTTGAACTTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGKGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCTTTATAAAGATCCCCAAGACTTCATGGGATCCTTAGCATGAACGAAAAACAACTCACAGCATGGAAGGGCTAGTGCTTGGAAGATAACTCGTGATTGATCCGGTGTTGGAATATAGTATATTGCCTAGGGATGCAAATCTGAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAAAATTGCTAAAATGATTCGTCAAACTTACTGTTCAGTGAGCTCCAAAGGAACTTTCATTTTATACTCAAGAAGCATTTTCAGCTTGATTTCCAACTCCACATTAACATCTTTCAAACGTTCATCAAACAATGTGTTGAAGTTCTTCTTCAATCTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTGAAGCAGTCCATTTTAT</pcr_primer_p1>
		<pcr_primer_p2>AGAATGGGTCTCATAAAGCTATC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCT</canonical_amplicon>
		<polymorphic_amplicon>ACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGKGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24911</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1267801</contig_pos>
        <strand></strand>
        <context>gaaaatagtc[A/C]actgacaaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTC</left_flank>
        <right_flank>ACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATATATGTTTGAACTTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCTTTATAAAGATCCCCAAGACTTCATGGGATCCTTAGCATGAACGAAAAACAACTCACAGCATGGAAGGGCTAGTGCTTGGAAGATAACTCGTGATTGATCCGGTGTTGGAATATAGTATATTGCCTAGGGATGCAAATCTGAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAAAATTGCTAAAATGATTCGTCAAACTTACTGTTCAGTGAGCTCCAAAGGAACTTTCATTTTATACTCAAGAAGCATTTTCAGCTTGATTTCCAACTCCACATTAACATCTTTCAAACGTTCATCAAACAATGTGTTGAAGTTCTTCTTCAATCTGGAAACTGGTATCGCCAAGTTGTGCTCGGCTT</canonical>
            <polymorphic>AATATATGTTTGAACTTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCMACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCTTTATAAAGATCCCCAAGACTTCATGGGATCCTTAGCATGAACGAAAAACAACTCACAGCATGGAAGGGCTAGTGCTTGGAAGATAACTCGTGATTGATCCGGTGTTGGAATATAGTATATTGCCTAGGGATGCAAATCTGAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAAAATTGCTAAAATGATTCGTCAAACTTACTGTTCAGTGAGCTCCAAAGGAACTTTCATTTTATACTCAAGAAGCATTTTCAGCTTGATTTCCAACTCCACATTAACATCTTTCAAACGTTCATCAAACAATGTGTTGAAGTTCTTCTTCAATCTGGAAACTGGTATCGCCAAGTTGTGCTCGGCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCTGAAGCAGTCCATTTTAT</pcr_primer_p1>
		<pcr_primer_p2>AGAATGGGTCTCATAAAGCTATC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCT</canonical_amplicon>
		<polymorphic_amplicon>ACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCMACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24912</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1267816</contig_pos>
        <strand></strand>
        <context>acaaaatgtt[A/C]aatacgatat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTT</left_flank>
        <right_flank>AATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCTTTATAAAGATCCCCAAGACTTCATGGGATCCTTAGCATGAACGAAAAACAACTCACAGCATGGAAGGGCTAGTGCTTGGAAGATAACTCGTGATTGATCCGGTGTTGGAATATAGTATATTGCCTAGGGATGCAAATCTGAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAAAATTGCTAAAATGATTCGTCAAACTTACTGTTCAGTGAGCTCCAAAGGAACTTTCATTTTATACTCAAGAAGCATTTTCAGCTTGATTTCCAACTCCACATTAACATCTTTCAAACGTTCATCAAACAATGTGTTGAAGTTCTTCTTCAATCTGGAAACTGGTATCGCCAAGTTGTGCTCGGCTTTGAATTTTGCACAAA</canonical>
            <polymorphic>TTTCTAACCAATCTCGAAATTGTTATCGCCAGGTTGTGCTCGGTTTTGAATTTCTCACAGAATTTTTTCAAACAACATGATTTTGAGGATCCGTCCGTTGCAAGTTTCATAAATTCGTTTATCATTTTTGTATCCCATGAGTTGTTCCATTCGTAGCTTTCTGAAGTGCTAACATTTCTCTGAATTGTGCTTCTATTGGCAGTCTTTGATGTTGTCGAGGTCGCATTGGTCATGAAGGCATTATGCGCCACAACTTTATGTTGGCTTGAAGATGATACATCCATTGGAATGAATCCGAGTTCTTGTCTGAAAAATGCATATTTTTTTGGGTTCCTATATTTTTTCGAGAAATTCCTTTTTTTTTGAAAGATGTTCGAGCACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTMAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCTTTATAAAGATCCCCAAGACTTCATGGGATCCTTAGCATGAACGAAAAACAACTCACAGCATGGAAGGGCTAGTGCTTGGAAGATAACTCGTGATTGATCCGGTGTTGGAATATAGTATATTGCCTAGGGATGCAAATCTGAAAGCAATAAATAAACATTTTCAAAGTTGGTGAGACATCAAAAATTGCTAAAATGATTCGTCAAACTTACTGTTCAGTGAGCTCCAAAGGAACTTTCATTTTATACTCAAGAAGCATTTTCAGCTTGATTTCCAACTCCACATTAACATCTTTCAAACGTTCATCAAACAATGTGTTGAAGTTCTTCTTCAATCTGGAAACTGGTATCGCCAAGTTGTGCTCGGCTTTGAATTTTGCACAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>498 403 99</canonical_bands>
                <polymorphic_bands>901 99</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCTGAAGCAGTCCATTTTAT</pcr_primer_p1>
		<pcr_primer_p2>AGAATGGGTCTCATAAAGCTATC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTAAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCT</canonical_amplicon>
		<polymorphic_amplicon>ACCTGAAGCAGTCCATTTTATAACAGTAAGCATCTAATAGAATTGCACTCTGACGTCAATTTTGTGACATTTTCTGGGTTTCGAGAAAGATATCAGAAAATAGTCAACTGACAAAATGTTMAATACGATATTGAACATGTTTCTCAGATGAAAAATGTTTTGATATGTTTCACAGAAACTGAGAACAAGGGACAATCAACATTTTTACAAAAGTTTGATAGCTTTATGAGACCCATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24913</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1408130</contig_pos>
        <strand>+</strand>
        <context>GAAAAATGGA[A/G]AGTGTTGGCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGTTTAAGGGCAGGCCGACGGTGGAGTGTCAATTTCAAGAAAAATGGA</left_flank>
        <right_flank>AGTGTTGGCCTAGTGGAGAAGAAAGTTTTTCCGATAATAATGATAATGAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTGCGAATACGGTTCCGGCCATGATACCAGCGGACACTCCAAGCCATGCAATCCAGATTTGAACTTTCAAACTGTGAAACCATGTGCAGAACGATTCTGAAAAGGAAAAAAAAAGATTGCCTACATCACAAAAACCAAATAAATTTTTCTCACGTCTTGGTTGTTCGTCTTCCATTGTGACGACTTGAGTTTTTCCTTTCGGCGATGCGACCAAAGTAAGATCGTTGTTGTAGATATGATGCATGCACTGAAAAATGAGAATATTTGAAAAATATGTCTGTTAAGGGAGGGATAGAGAGTACGAAATGTGACTAGAACCCGCTTCCTCAGACCACTTATATATGCGTTCAAGTTGTTATCATCACAAAATCATTGTTGCACCATATGGCTCTTCTCACTATCAAACTTATCAGCTTCCCCCTATTGTTTTTACGCCCCTCCTCTCCATTGTTTAAGGGCAGGCCGACGGTGGAGTGTCAATTTCAAGAAAAATGGAAAGTGTTGGCCTAGTGGAGAAGAAAGTTTTTCCGATAATAATGATAATGACAAATGATTTTTGAAAAAAATGTCAAAGATCTCAAGCTGAAGGTGTGACTATTATAATCTTCGGACAAACGATCGATGGGGATTTTCCAATAAGATGTTTTGTATTTTACTATAAGTTTTACATGGGAAACCACTCAAAAATATTTTCTACTCATACATCTTGAAGACTCACCTGAAAACCAGCTTACAAATTGTTCTGCGAGTGCCAGAACGCGTTTTTTAGACGACAGAAAATACCAGAAAATCGATAAACTGGTCCGTTCTATGAACAGAAGACGATCAACTAACACACACAAGACGGTCCGCAGATGTTGACCTCCATCCCTAAAAATAGAGCTAGAAACGAAGAGGGTGCTAGAGAAAGAAGGTAGAGAAGACGTCTCCTGTTGCGAATAAGATAGCTGTTACCCGTTGTCTCTTTTCGGAAATCTAGATACTGTAATCATTCCAG</canonical>
            <polymorphic>GAATTGCGAATACGGTTCCGGCCATGATACCAGCGGACACTCCAAGCCATGCAATCCAGATTTGAACTTTCAAACTGTGAAACCATGTGCAGAACGATTCTGAAAAGGAAAAAAAAAGATTGCCTACATCACAAAAACCAAATAAATTTTTCTCACGTCTTGGTTGTTCGTCTTCCATTGTGACGACTTGAGTTTTTCCTTTCGGCGATGCGACCAAAGTAAGATCGTTGTTGTAGATATGATGCATGCACTGAAAAATGAGAATATTTGAAAAATATGTCTGTTAAGGGAGGGATAGAGAGTACGAAATGTGACTAGAACCCGCTTCCTCAGACCACTTATATATGCGTTCAAGTTGTTATCATCACAAAATCATTGTTGCACCATATGGCTCTTCTCACTATCAAACTTATCAGCTTCCCCCTATTGTTTTTACGCCCCTCCTCTCCATTGTTTAAGGGCAGGCCGACGGTGGAGTGTCAATTTCAAGAAAAATGGARAGTGTTGGCCTAGTGGAGAAGAAAGTTTTTCCGATAATAATGATAATGACAAATGATTTTTGAAAAAAATGTCAAAGATCTCAAGCTGAAGGTGTGACTATTATAATCTTCGGACAAACGATCGATGGGGATTTTCCAATAAGATGTTTTGTATTTTACTATAAGTTTTACATGGGAAACCACTCAAAAATATTTTCTACTCATACATCTTGAAGACTCACCTGAAAACCAGCTTACAAATTGTTCTGCGAGTGCCAGAACGCGTTTTTTAGACGACAGAAAATACCAGAAAATCGATAAACTGGTCCGTTCTATGAACAGAAGACGATCAACTAACACACACAAGACGGTCCGCAGATGTTGACCTCCATCCCTAAAAATAGAGCTAGAAACGAAGAGGGTGCTAGAGAAAGAAGGTAGAGAAGACGTCTCCTGTTGCGAATAAGATAGCTGTTACCCGTTGTCTCTTTTCGGAAATCTAGATACTGTAATCATTCCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACTTATATATGCGTTCAAGTT</pcr_primer_p1>
		<pcr_primer_p2>GCTTGAGATCTTTGACATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CCACTTATATATGCGTTCAAGTTGTTATCATCACAAAATCATTGTTGCACCATATGGCTCTTCTCACTATCAAACTTATCAGCTTCCCCCTATTGTTTTTACGCCCCTCCTCTCCATTGTTTAAGGGCAGGCCGACGGTGGAGTGTCAATTTCAAGAAAAATGGAAAGTGTTGGCCTAGTGGAGAAGAAAGTTTTTCCGATAATAATGATAATGACAAATGATTTTTGAAAAAAATGTCAAAGATCTCAAGC</canonical_amplicon>
		<polymorphic_amplicon>CCACTTATATATGCGTTCAAGTTGTTATCATCACAAAATCATTGTTGCACCATATGGCTCTTCTCACTATCAAACTTATCAGCTTCCCCCTATTGTTTTTACGCCCCTCCTCTCCATTGTTTAAGGGCAGGCCGACGGTGGAGTGTCAATTTCAAGAAAAATGGARAGTGTTGGCCTAGTGGAGAAGAAAGTTTTTCCGATAATAATGATAATGACAAATGATTTTTGAAAAAAATGTCAAAGATCTCAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24914</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1408306</contig_pos>
        <strand>+</strand>
        <context>TTTTACATGG[A/G]AAACCACTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGGGATTTTCCAATAAGATGTTTTGTATTTTACTATAAGTTTTACATGG</left_flank>
        <right_flank>AAACCACTCAAAAATATTTTCTACTCATACATCTTGAAGACTCACCTGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGTGACGACTTGAGTTTTTCCTTTCGGCGATGCGACCAAAGTAAGATCGTTGTTGTAGATATGATGCATGCACTGAAAAATGAGAATATTTGAAAAATATGTCTGTTAAGGGAGGGATAGAGAGTACGAAATGTGACTAGAACCCGCTTCCTCAGACCACTTATATATGCGTTCAAGTTGTTATCATCACAAAATCATTGTTGCACCATATGGCTCTTCTCACTATCAAACTTATCAGCTTCCCCCTATTGTTTTTACGCCCCTCCTCTCCATTGTTTAAGGGCAGGCCGACGGTGGAGTGTCAATTTCAAGAAAAATGGAAAGTGTTGGCCTAGTGGAGAAGAAAGTTTTTCCGATAATAATGATAATGACAAATGATTTTTGAAAAAAATGTCAAAGATCTCAAGCTGAAGGTGTGACTATTATAATCTTCGGACAAACGATCGATGGGGATTTTCCAATAAGATGTTTTGTATTTTACTATAAGTTTTACATGGGAAACCACTCAAAAATATTTTCTACTCATACATCTTGAAGACTCACCTGAAAACCAGCTTACAAATTGTTCTGCGAGTGCCAGAACGCGTTTTTTAGACGACAGAAAATACCAGAAAATCGATAAACTGGTCCGTTCTATGAACAGAAGACGATCAACTAACACACACAAGACGGTCCGCAGATGTTGACCTCCATCCCTAAAAATAGAGCTAGAAACGAAGAGGGTGCTAGAGAAAGAAGGTAGAGAAGACGTCTCCTGTTGCGAATAAGATAGCTGTTACCCGTTGTCTCTTTTCGGAAATCTAGATACTGTAATCATTCCAGAAAAAAAAACGATTTTTATGACGCACAAATTAATCTCTGTTCATTTCATCGAAACCCCTCCTGGCTTTTTTTGGTACATGTGAAAAAAGAGAAAAAAACCGAGGCAATAAAACAGTGGTTTCATATTCCTCCTGTATTCCACGTGCTTCCCCAAACAGTTCAATTTTTTGGATGGT</canonical>
            <polymorphic>ATTGTGACGACTTGAGTTTTTCCTTTCGGCGATGCGACCAAAGTAAGATCGTTGTTGTAGATATGATGCATGCACTGAAAAATGAGAATATTTGAAAAATATGTCTGTTAAGGGAGGGATAGAGAGTACGAAATGTGACTAGAACCCGCTTCCTCAGACCACTTATATATGCGTTCAAGTTGTTATCATCACAAAATCATTGTTGCACCATATGGCTCTTCTCACTATCAAACTTATCAGCTTCCCCCTATTGTTTTTACGCCCCTCCTCTCCATTGTTTAAGGGCAGGCCGACGGTGGAGTGTCAATTTCAAGAAAAATGGAAAGTGTTGGCCTAGTGGAGAAGAAAGTTTTTCCGATAATAATGATAATGACAAATGATTTTTGAAAAAAATGTCAAAGATCTCAAGCTGAAGGTGTGACTATTATAATCTTCGGACAAACGATCGATGGGGATTTTCCAATAAGATGTTTTGTATTTTACTATAAGTTTTACATGGRAAACCACTCAAAAATATTTTCTACTCATACATCTTGAAGACTCACCTGAAAACCAGCTTACAAATTGTTCTGCGAGTGCCAGAACGCGTTTTTTAGACGACAGAAAATACCAGAAAATCGATAAACTGGTCCGTTCTATGAACAGAAGACGATCAACTAACACACACAAGACGGTCCGCAGATGTTGACCTCCATCCCTAAAAATAGAGCTAGAAACGAAGAGGGTGCTAGAGAAAGAAGGTAGAGAAGACGTCTCCTGTTGCGAATAAGATAGCTGTTACCCGTTGTCTCTTTTCGGAAATCTAGATACTGTAATCATTCCAGAAAAAAAAACGATTTTTATGACGCACAAATTAATCTCTGTTCATTTCATCGAAACCCCTCCTGGCTTTTTTTGGTACATGTGAAAAAAGAGAAAAAAACCGAGGCAATAAAACAGTGGTTTCATATTCCTCCTGTATTCCACGTGCTTCCCCAAACAGTTCAATTTTTTGGATGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGCTGAAGGTGTGACTATTAT</pcr_primer_p1>
		<pcr_primer_p2>AGTTGATCGTCTTCTGTTCATAG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CAAGCTGAAGGTGTGACTATTATAATCTTCGGACAAACGATCGATGGGGATTTTCCAATAAGATGTTTTGTATTTTACTATAAGTTTTACATGGGAAACCACTCAAAAATATTTTCTACTCATACATCTTGAAGACTCACCTGAAAACCAGCTTACAAATTGTTCTGCGAGTGCCAGAACGCGTTTTTTAGACGACAGAAAATACCAGAAAATCGATAAACTGGTCCGTTCTATGAACAGAAGACGATCAACT</canonical_amplicon>
		<polymorphic_amplicon>CAAGCTGAAGGTGTGACTATTATAATCTTCGGACAAACGATCGATGGGGATTTTCCAATAAGATGTTTTGTATTTTACTATAAGTTTTACATGGRAAACCACTCAAAAATATTTTCTACTCATACATCTTGAAGACTCACCTGAAAACCAGCTTACAAATTGTTCTGCGAGTGCCAGAACGCGTTTTTTAGACGACAGAAAATACCAGAAAATCGATAAACTGGTCCGTTCTATGAACAGAAGACGATCAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24915</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1410676</contig_pos>
        <strand>+</strand>
        <context>GATGAAAACG[A/T]GGAGCTACTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGGCGTTCTGTCAGAGTCTTTACGGCACCTGCGGTACTTGATGAAAACG</left_flank>
        <right_flank>GGAGCTACTGTAAGAGAGACCTATGGTGAAGAACTAAAACCTGCGACTAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAAAAGAAGGTGAAAGTGGTCCGTCCGGAAAACATGCCAGTGACAGCGCCAAATTTTTTCGCAGGACAGGAATATGGATATTATCTGACGGAGATGGTCAATCGTGGAACCGAGACACTTTTGATGATTTACGAAAGTTAGTTTATTCTGTTTCAGAGGGATTTTTGGGAGGGTAGAACGGGAGGGATTAGAAAACATTTTTGACTAAGGATGTGGTACTGGGCTGGTATTACAGTATACATAGCAATTCAACTACAGTAAACACTCTACTAGAACGCTACCCGAATCGTCAAAACTGAGCCCATGTATCCCATTTTCCGTGAAAGATATCAAAATAGGTTAACTAATAAAATCTTGCTGATATCATGATAAACATTTTCTTAATCGACAATTTTTTGACATCTTTCAAAAGAAGTGAGATTCATAAGCTCAAAGTGGACGGTCCAAGTGGCGTTCTGTCAGAGTCTTTACGGCACCTGCGGTACTTGATGAAAACGTGGAGCTACTGTAAGAGAGACCTATGGTGAAGAACTAAAACCTGCGACTAAGTTTTTGACGTCACTGATACCGTATTCCCTCCGACATAAGCCCACCCACACCGTCAAATCTGAGCTCAATTATCTTGATTTCTATGAAAAATAGCAAGAAAATGTCAACTGATAATTTACTCATCATATTATCACCAATATTCTAACAGTTGTCAAAGTTTTAAAATTTTTTACAGTAATCGCGATAATTGAGCTCAAATTTGACGGTTTAGGTAGGTTTCTATTAGTAGAAATACGATAAATTGAATTACTGTAATTTTTGAAACTACTGTTAATTTTCAGAAAAAAACTTAAATTAAAAAGTTCTATCACTATACTTTAGGAGGGGGAATGCAGCTCATAATCAGTGAGGTTTTGTTTATATTTCTGGTGAATATATTGTAGTTAAGCTAGGGTGGCTGTAACGTTTGGACGTATTGTAGATTGTCGGGCCCTTTTCTAGTTTCGAGG</canonical>
            <polymorphic>AACAAAAGAAGGTGAAAGTGGTCCGTCCGGAAAACATGCCAGTGACAGCGCCAAATTTTTTCGCAGGACAGGAATATGGATATTATCTGACGGAGATGGTCAATCGTGGAACCGAGACACTTTTGATGATTTACGAAAGTTAGTTTATTCTGTTTCAGAGGGATTTTTGGGAGGGTAGAACGGGAGGGATTAGAAAACATTTTTGACTAAGGATGTGGTACTGGGCTGGTATTACAGTATACATAGCAATTCAACTACAGTAAACACTCTACTAGAACGCTACCCGAATCGTCAAAACTGAGCCCATGTATCCCATTTTCCGTGAAAGATATCAAAATAGGTTAACTAATAAAATCTTGCTGATATCATGATAAACATTTTCTTAATCGACAATTTTTTGACATCTTTCAAAAGAAGTGAGATTCATAAGCTCAAAGTGGACGGTCCAAGTGGCGTTCTGTCAGAGTCTTTACGGCACCTGCGGTACTTGATGAAAACGWGGAGCTACTGTAAGAGAGACCTATGGTGAAGAACTAAAACCTGCGACTAAGTTTTTGACGTCACTGATACCGTATTCCCTCCGACATAAGCCCACCCACACCGTCAAATCTGAGCTCAATTATCTTGATTTCTATGAAAAATAGCAAGAAAATGTCAACTGATAATTTACTCATCATATTATCACCAATATTCTAACAGTTGTCAAAGTTTTAAAATTTTTTACAGTAATCGCGATAATTGAGCTCAAATTTGACGGTTTAGGTAGGTTTCTATTAGTAGAAATACGATAAATTGAATTACTGTAATTTTTGAAACTACTGTTAATTTTCAGAAAAAAACTTAAATTAAAAAGTTCTATCACTATACTTTAGGAGGGGGAATGCAGCTCATAATCAGTGAGGTTTTGTTTATATTTCTGGTGAATATATTGTAGTTAAGCTAGGGTGGCTGTAACGTTTGGACGTATTGTAGATTGTCGGGCCCTTTTCTAGTTTCGAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>177 98 95 84 64 58 53 49 38 35 31 27 25 25 24 24 23 20 14 13 11 6 4 2</canonical_bands>
                <polymorphic_bands>177 98 95 84 64 58 53 51 49 38 35 31 25 25 24 23 20 14 13 11 6 4 2</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>497 396 61 38 8</canonical_bands>
                <polymorphic_bands>558 396 38 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTACTGGGCTGGTATTACA</pcr_primer_p1>
		<pcr_primer_p2>AAACTTAGTCGCAGGTTTTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>338</pcr_amplicon_size>
		<canonical_amplicon>GGTACTGGGCTGGTATTACAGTATACATAGCAATTCAACTACAGTAAACACTCTACTAGAACGCTACCCGAATCGTCAAAACTGAGCCCATGTATCCCATTTTCCGTGAAAGATATCAAAATAGGTTAACTAATAAAATCTTGCTGATATCATGATAAACATTTTCTTAATCGACAATTTTTTGACATCTTTCAAAAGAAGTGAGATTCATAAGCTCAAAGTGGACGGTCCAAGTGGCGTTCTGTCAGAGTCTTTACGGCACCTGCGGTACTTGATGAAAACGTGGAGCTACTGTAAGAGAGACCTATGGTGAAGAACTAAAACCTGCGACTAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>GGTACTGGGCTGGTATTACAGTATACATAGCAATTCAACTACAGTAAACACTCTACTAGAACGCTACCCGAATCGTCAAAACTGAGCCCATGTATCCCATTTTCCGTGAAAGATATCAAAATAGGTTAACTAATAAAATCTTGCTGATATCATGATAAACATTTTCTTAATCGACAATTTTTTGACATCTTTCAAAAGAAGTGAGATTCATAAGCTCAAAGTGGACGGTCCAAGTGGCGTTCTGTCAGAGTCTTTACGGCACCTGCGGTACTTGATGAAAACGWGGAGCTACTGTAAGAGAGACCTATGGTGAAGAACTAAAACCTGCGACTAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24916</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1413811</contig_pos>
        <strand></strand>
        <context>TCGGAagaga[G/A]agagagagag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGAGGTCACGCAAGTCCTAGGCGGAAAAATCGTAAAAAATTCGGAAGAGA</left_flank>
        <right_flank>AGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAAATATAAACAAAAAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAATCAAAGATTGCCAATAAAAAATGTCCTTTTTTGCATTCGATTCACTTTCGATGAAATAGTTTCATCATTTCTAGAATCTCCGATATGTTACACAAAACTTTTCATTTCTTCAGTTGGTTTGATTTTCTGATTGATGATAATCTAGTGTCTGAACCATTTTTCGAGAAAGTAAATCATGAATTGGAAAATCTCAATATAAAAGTTGGAGAATCTATTTGAATTTTCTGGAGCGTTCAACTTTCGAAAATCACTGAAAAACGTTGAAAGCGATTCTAGGAACTTTGAACCACTCAGAAATCTAGCAGTAGTTTATTCTTTTCAAAGTTTTTTTTGTCAATATTAAAATATAAAACTCACCAGCCTTGCTGTGCTCGATGATTCGGCAGTAGAAGACGATGTGATCCTCCGAAAATCGATAACGTCGACAAGAAAAGAACAGGGATATAGAGGTCACGCAAGTCCTAGGCGGAAAAATCGTAAAAAATTCGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAAATATAAACAAAAAAAATTTTCCAACAAAAAATGCAAAGGTGCTCCACCGATGCCTCGTATTTTTTGGTTCTCTTTGGCTCCGTAGTTCAAATAGATTGTCACCATTTCTCACTCACTCGGTCACGCTTCGACCCCCGGTCCTTCTTTTCCTGCGCGCCTCTACAACTTGTCTCTTTCTCATCGCGTTCCATTTGCTTTATCTTTTTTTTTGCTTCCTCGCAGTGAATGCAAGAGGACAAAACGGAGAAGGAGGAGTAGCTGGGGAGAGAGGCCAGCAGACTTTCTTTTCTTTTCTTCCTTTTTTTCCGTGTTTACTTTAATCATTTTCATTTCTGCACTATGATGCACTCCGTATCTTTTGTACTTTAATTTTAGGATTCCCGAATTTCTGAAATTTTCGAACCGAGTTTTAAGGTTATTAATTGTTGTCTGAATTCTGAACTCGTCGATCCTTGAAACGCTTGAA</canonical>
            <polymorphic>GCAATCAAAGATTGCCAATAAAAAATGTCCTTTTTTGCATTCGATTCACTTTCGATGAAATAGTTTCATCATTTCTAGAATCTCCGATATGTTACACAAAACTTTTCATTTCTTCAGTTGGTTTGATTTTCTGATTGATGATAATCTAGTGTCTGAACCATTTTTCGAGAAAGTAAATCATGAATTGGAAAATCTCAATATAAAAGTTGGAGAATCTATTTGAATTTTCTGGAGCGTTCAACTTTCGAAAATCACTGAAAAACGTTGAAAGCGATTCTAGGAACTTTGAACCACTCAGAAATCTAGCAGTAGTTTATTCTTTTCAAAGTTTTTTTTGTCAATATTAAAATATAAAACTCACCAGCCTTGCTGTGCTCGATGATTCGGCAGTAGAAGACGATGTGATCCTCCGAAAATCGATAACGTCGACAAGAAAAGAACAGGGATATAGAGGTCACGCAAGTCCTAGGCGGAAAAATCGTAAAAAATTCGGAAGAGARAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAAATATAAACAAAAAAAATTTTCCAACAAAAAATGCAAAGGTGCTCCACCGATGCCTCGTATTTTTTGGTTCTCTTTGGCTCCGTAGTTCAAATAGATTGTCACCATTTCTCACTCACTCGGTCACGCTTCGACCCCCGGTCCTTCTTTTCCTGCGCGCCTCTACAACTTGTCTCTTTCTCATCGCGTTCCATTTGCTTTATCTTTTTTTTTGCTTCCTCGCAGTGAATGCAAGAGGACAAAACGGAGAAGGAGGAGTAGCTGGGGAGAGAGGCCAGCAGACTTTCTTTTCTTTTCTTCCTTTTTTTCCGTGTTTACTTTAATCATTTTCATTTCTGCACTATGATGCACTCCGTATCTTTTGTACTTTAATTTTAGGATTCCCGAATTTCTGAAATTTTCGAACCGAGTTTTAAGGTTATTAATTGTTGTCTGAATTCTGAACTCGTCGATCCTTGAAACGCTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTAGAAGACGATGTGATCCT</pcr_primer_p1>
		<pcr_primer_p2>AAATGGTGACAATCTATTTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CAGTAGAAGACGATGTGATCCTCCGAAAATCGATAACGTCGACAAGAAAAGAACAGGGATATAGAGGTCACGCAAGTCCTAGGCGGAAAAATCGTAAAAAATTCGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAAATATAAACAAAAAAAATTTTCCAACAAAAAATGCAAAGGTGCTCCACCGATGCCTCGTATTTTTTGGTTCTCTTTGGCTCCGTAGTTCAAATAGATTGTCACCATTT</canonical_amplicon>
		<polymorphic_amplicon>CAGTAGAAGACGATGTGATCCTCCGAAAATCGATAACGTCGACAAGAAAAGAACAGGGATATAGAGGTCACGCAAGTCCTAGGCGGAAAAATCGTAAAAAATTCGGAAGAGARAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAAATATAAACAAAAAAAATTTTCCAACAAAAAATGCAAAGGTGCTCCACCGATGCCTCGTATTTTTTGGTTCTCTTTGGCTCCGTAGTTCAAATAGATTGTCACCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24917</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1413881</contig_pos>
        <strand>+</strand>
        <context>AAAAAATGCA[A/G]RGGTGCTCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGAGAGACAGAGAAATATAAACAAAAAAAATTTTCCAACAAAAAATGCA</left_flank>
        <right_flank>AGGTGCTCCACCGATGCCTCGTATTTTTTGGTTCTCTTTGGCTCCGTAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCTAGAATCTCCGATATGTTACACAAAACTTTTCATTTCTTCAGTTGGTTTGATTTTCTGATTGATGATAATCTAGTGTCTGAACCATTTTTCGAGAAAGTAAATCATGAATTGGAAAATCTCAATATAAAAGTTGGAGAATCTATTTGAATTTTCTGGAGCGTTCAACTTTCGAAAATCACTGAAAAACGTTGAAAGCGATTCTAGGAACTTTGAACCACTCAGAAATCTAGCAGTAGTTTATTCTTTTCAAAGTTTTTTTTGTCAATATTAAAATATAAAACTCACCAGCCTTGCTGTGCTCGATGATTCGGCAGTAGAAGACGATGTGATCCTCCGAAAATCGATAACGTCGACAAGAAAAGAACAGGGATATAGAGGTCACGCAAGTCCTAGGCGGAAAAATCGTAAAAAATTCGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAAATATAAACAAAAAAAATTTTCCAACAAAAAATGCAAAGGTGCTCCACCGATGCCTCGTATTTTTTGGTTCTCTTTGGCTCCGTAGTTCAAATAGATTGTCACCATTTCTCACTCACTCGGTCACGCTTCGACCCCCGGTCCTTCTTTTCCTGCGCGCCTCTACAACTTGTCTCTTTCTCATCGCGTTCCATTTGCTTTATCTTTTTTTTTGCTTCCTCGCAGTGAATGCAAGAGGACAAAACGGAGAAGGAGGAGTAGCTGGGGAGAGAGGCCAGCAGACTTTCTTTTCTTTTCTTCCTTTTTTTCCGTGTTTACTTTAATCATTTTCATTTCTGCACTATGATGCACTCCGTATCTTTTGTACTTTAATTTTAGGATTCCCGAATTTCTGAAATTTTCGAACCGAGTTTTAAGGTTATTAATTGTTGTCTGAATTCTGAACTCGTCGATCCTTGAAACGCTTGAAATGAGAATAAAACCAGCTGGCAAATGTTTGCGGCGCCAGGCATAGTTGTTCAAACACAACCACACACACA</canonical>
            <polymorphic>ATTTCTAGAATCTCCGATATGTTACACAAAACTTTTCATTTCTTCAGTTGGTTTGATTTTCTGATTGATGATAATCTAGTGTCTGAACCATTTTTCGAGAAAGTAAATCATGAATTGGAAAATCTCAATATAAAAGTTGGAGAATCTATTTGAATTTTCTGGAGCGTTCAACTTTCGAAAATCACTGAAAAACGTTGAAAGCGATTCTAGGAACTTTGAACCACTCAGAAATCTAGCAGTAGTTTATTCTTTTCAAAGTTTTTTTTGTCAATATTAAAATATAAAACTCACCAGCCTTGCTGTGCTCGATGATTCGGCAGTAGAAGACGATGTGATCCTCCGAAAATCGATAACGTCGACAAGAAAAGAACAGGGATATAGAGGTCACGCAAGTCCTAGGCGGAAAAATCGTAAAAAATTCGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAAATATAAACAAAAAAAATTTTCCAACAAAAAATGCARAGGTGCTCCACCGATGCCTCGTATTTTTTGGTTCTCTTTGGCTCCGTAGTTCAAATAGATTGTCACCATTTCTCACTCACTCGGTCACGCTTCGACCCCCGGTCCTTCTTTTCCTGCGCGCCTCTACAACTTGTCTCTTTCTCATCGCGTTCCATTTGCTTTATCTTTTTTTTTGCTTCCTCGCAGTGAATGCAAGAGGACAAAACGGAGAAGGAGGAGTAGCTGGGGAGAGAGGCCAGCAGACTTTCTTTTCTTTTCTTCCTTTTTTTCCGTGTTTACTTTAATCATTTTCATTTCTGCACTATGATGCACTCCGTATCTTTTGTACTTTAATTTTAGGATTCCCGAATTTCTGAAATTTTCGAACCGAGTTTTAAGGTTATTAATTGTTGTCTGAATTCTGAACTCGTCGATCCTTGAAACGCTTGAAATGAGAATAAAACCAGCTGGCAAATGTTTGCGGCGCCAGGCATAGTTGTTCAAACACAACCACACACACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTAGAAGACGATGTGATCCT</pcr_primer_p1>
		<pcr_primer_p2>AAATGGTGACAATCTATTTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CAGTAGAAGACGATGTGATCCTCCGAAAATCGATAACGTCGACAAGAAAAGAACAGGGATATAGAGGTCACGCAAGTCCTAGGCGGAAAAATCGTAAAAAATTCGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAAATATAAACAAAAAAAATTTTCCAACAAAAAATGCAAAGGTGCTCCACCGATGCCTCGTATTTTTTGGTTCTCTTTGGCTCCGTAGTTCAAATAGATTGTCACCATTT</canonical_amplicon>
		<polymorphic_amplicon>CAGTAGAAGACGATGTGATCCTCCGAAAATCGATAACGTCGACAAGAAAAGAACAGGGATATAGAGGTCACGCAAGTCCTAGGCGGAAAAATCGTAAAAAATTCGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAAATATAAACAAAAAAAATTTTCCAACAAAAAATGCARAGGTGCTCCACCGATGCCTCGTATTTTTTGGTTCTCTTTGGCTCCGTAGTTCAAATAGATTGTCACCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24918</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1413882</contig_pos>
        <strand>+</strand>
        <context>AAAAATGCAR[A/G]GGTGCTCCAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAGAGACAGAGAAATATAAACAAAAAAAATTTTCCAACAAAAAATGCAA</left_flank>
        <right_flank>GGTGCTCCACCGATGCCTCGTATTTTTTGGTTCTCTTTGGCTCCGTAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTAGAATCTCCGATATGTTACACAAAACTTTTCATTTCTTCAGTTGGTTTGATTTTCTGATTGATGATAATCTAGTGTCTGAACCATTTTTCGAGAAAGTAAATCATGAATTGGAAAATCTCAATATAAAAGTTGGAGAATCTATTTGAATTTTCTGGAGCGTTCAACTTTCGAAAATCACTGAAAAACGTTGAAAGCGATTCTAGGAACTTTGAACCACTCAGAAATCTAGCAGTAGTTTATTCTTTTCAAAGTTTTTTTTGTCAATATTAAAATATAAAACTCACCAGCCTTGCTGTGCTCGATGATTCGGCAGTAGAAGACGATGTGATCCTCCGAAAATCGATAACGTCGACAAGAAAAGAACAGGGATATAGAGGTCACGCAAGTCCTAGGCGGAAAAATCGTAAAAAATTCGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAAATATAAACAAAAAAAATTTTCCAACAAAAAATGCAAAGGTGCTCCACCGATGCCTCGTATTTTTTGGTTCTCTTTGGCTCCGTAGTTCAAATAGATTGTCACCATTTCTCACTCACTCGGTCACGCTTCGACCCCCGGTCCTTCTTTTCCTGCGCGCCTCTACAACTTGTCTCTTTCTCATCGCGTTCCATTTGCTTTATCTTTTTTTTTGCTTCCTCGCAGTGAATGCAAGAGGACAAAACGGAGAAGGAGGAGTAGCTGGGGAGAGAGGCCAGCAGACTTTCTTTTCTTTTCTTCCTTTTTTTCCGTGTTTACTTTAATCATTTTCATTTCTGCACTATGATGCACTCCGTATCTTTTGTACTTTAATTTTAGGATTCCCGAATTTCTGAAATTTTCGAACCGAGTTTTAAGGTTATTAATTGTTGTCTGAATTCTGAACTCGTCGATCCTTGAAACGCTTGAAATGAGAATAAAACCAGCTGGCAAATGTTTGCGGCGCCAGGCATAGTTGTTCAAACACAACCACACACACAC</canonical>
            <polymorphic>TTTCTAGAATCTCCGATATGTTACACAAAACTTTTCATTTCTTCAGTTGGTTTGATTTTCTGATTGATGATAATCTAGTGTCTGAACCATTTTTCGAGAAAGTAAATCATGAATTGGAAAATCTCAATATAAAAGTTGGAGAATCTATTTGAATTTTCTGGAGCGTTCAACTTTCGAAAATCACTGAAAAACGTTGAAAGCGATTCTAGGAACTTTGAACCACTCAGAAATCTAGCAGTAGTTTATTCTTTTCAAAGTTTTTTTTGTCAATATTAAAATATAAAACTCACCAGCCTTGCTGTGCTCGATGATTCGGCAGTAGAAGACGATGTGATCCTCCGAAAATCGATAACGTCGACAAGAAAAGAACAGGGATATAGAGGTCACGCAAGTCCTAGGCGGAAAAATCGTAAAAAATTCGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAAATATAAACAAAAAAAATTTTCCAACAAAAAATGCAARGGTGCTCCACCGATGCCTCGTATTTTTTGGTTCTCTTTGGCTCCGTAGTTCAAATAGATTGTCACCATTTCTCACTCACTCGGTCACGCTTCGACCCCCGGTCCTTCTTTTCCTGCGCGCCTCTACAACTTGTCTCTTTCTCATCGCGTTCCATTTGCTTTATCTTTTTTTTTGCTTCCTCGCAGTGAATGCAAGAGGACAAAACGGAGAAGGAGGAGTAGCTGGGGAGAGAGGCCAGCAGACTTTCTTTTCTTTTCTTCCTTTTTTTCCGTGTTTACTTTAATCATTTTCATTTCTGCACTATGATGCACTCCGTATCTTTTGTACTTTAATTTTAGGATTCCCGAATTTCTGAAATTTTCGAACCGAGTTTTAAGGTTATTAATTGTTGTCTGAATTCTGAACTCGTCGATCCTTGAAACGCTTGAAATGAGAATAAAACCAGCTGGCAAATGTTTGCGGCGCCAGGCATAGTTGTTCAAACACAACCACACACACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTAGAAGACGATGTGATCCT</pcr_primer_p1>
		<pcr_primer_p2>AAATGGTGACAATCTATTTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CAGTAGAAGACGATGTGATCCTCCGAAAATCGATAACGTCGACAAGAAAAGAACAGGGATATAGAGGTCACGCAAGTCCTAGGCGGAAAAATCGTAAAAAATTCGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAAATATAAACAAAAAAAATTTTCCAACAAAAAATGCAAAGGTGCTCCACCGATGCCTCGTATTTTTTGGTTCTCTTTGGCTCCGTAGTTCAAATAGATTGTCACCATTT</canonical_amplicon>
		<polymorphic_amplicon>CAGTAGAAGACGATGTGATCCTCCGAAAATCGATAACGTCGACAAGAAAAGAACAGGGATATAGAGGTCACGCAAGTCCTAGGCGGAAAAATCGTAAAAAATTCGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAAATATAAACAAAAAAAATTTTCCAACAAAAAATGCAARGGTGCTCCACCGATGCCTCGTATTTTTTGGTTCTCTTTGGCTCCGTAGTTCAAATAGATTGTCACCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24919</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1413929</contig_pos>
        <strand>+</strand>
        <context>TTGGCTCCGT[C/G]GTTCAAATAG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAAAGGTGCTCCACCGATGCCTCGTATTTTTTGGTTCTCTTTGGCTCCGT</left_flank>
        <right_flank>GTTCAAATAGATTGTCACCATTTCTCACTCACTCGGTCACGCTTCGACCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTTTGATTTTCTGATTGATGATAATCTAGTGTCTGAACCATTTTTCGAGAAAGTAAATCATGAATTGGAAAATCTCAATATAAAAGTTGGAGAATCTATTTGAATTTTCTGGAGCGTTCAACTTTCGAAAATCACTGAAAAACGTTGAAAGCGATTCTAGGAACTTTGAACCACTCAGAAATCTAGCAGTAGTTTATTCTTTTCAAAGTTTTTTTTGTCAATATTAAAATATAAAACTCACCAGCCTTGCTGTGCTCGATGATTCGGCAGTAGAAGACGATGTGATCCTCCGAAAATCGATAACGTCGACAAGAAAAGAACAGGGATATAGAGGTCACGCAAGTCCTAGGCGGAAAAATCGTAAAAAATTCGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAAATATAAACAAAAAAAATTTTCCAACAAAAAATGCAAAGGTGCTCCACCGATGCCTCGTATTTTTTGGTTCTCTTTGGCTCCGTAGTTCAAATAGATTGTCACCATTTCTCACTCACTCGGTCACGCTTCGACCCCCGGTCCTTCTTTTCCTGCGCGCCTCTACAACTTGTCTCTTTCTCATCGCGTTCCATTTGCTTTATCTTTTTTTTTGCTTCCTCGCAGTGAATGCAAGAGGACAAAACGGAGAAGGAGGAGTAGCTGGGGAGAGAGGCCAGCAGACTTTCTTTTCTTTTCTTCCTTTTTTTCCGTGTTTACTTTAATCATTTTCATTTCTGCACTATGATGCACTCCGTATCTTTTGTACTTTAATTTTAGGATTCCCGAATTTCTGAAATTTTCGAACCGAGTTTTAAGGTTATTAATTGTTGTCTGAATTCTGAACTCGTCGATCCTTGAAACGCTTGAAATGAGAATAAAACCAGCTGGCAAATGTTTGCGGCGCCAGGCATAGTTGTTCAAACACAACCACACACACACAATCGTCCGCATCATATGATGTGGCATCATCAGTTGAAAAAGTTTAA</canonical>
            <polymorphic>TGGTTTGATTTTCTGATTGATGATAATCTAGTGTCTGAACCATTTTTCGAGAAAGTAAATCATGAATTGGAAAATCTCAATATAAAAGTTGGAGAATCTATTTGAATTTTCTGGAGCGTTCAACTTTCGAAAATCACTGAAAAACGTTGAAAGCGATTCTAGGAACTTTGAACCACTCAGAAATCTAGCAGTAGTTTATTCTTTTCAAAGTTTTTTTTGTCAATATTAAAATATAAAACTCACCAGCCTTGCTGTGCTCGATGATTCGGCAGTAGAAGACGATGTGATCCTCCGAAAATCGATAACGTCGACAAGAAAAGAACAGGGATATAGAGGTCACGCAAGTCCTAGGCGGAAAAATCGTAAAAAATTCGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAAATATAAACAAAAAAAATTTTCCAACAAAAAATGCAAAGGTGCTCCACCGATGCCTCGTATTTTTTGGTTCTCTTTGGCTCCGTSGTTCAAATAGATTGTCACCATTTCTCACTCACTCGGTCACGCTTCGACCCCCGGTCCTTCTTTTCCTGCGCGCCTCTACAACTTGTCTCTTTCTCATCGCGTTCCATTTGCTTTATCTTTTTTTTTGCTTCCTCGCAGTGAATGCAAGAGGACAAAACGGAGAAGGAGGAGTAGCTGGGGAGAGAGGCCAGCAGACTTTCTTTTCTTTTCTTCCTTTTTTTCCGTGTTTACTTTAATCATTTTCATTTCTGCACTATGATGCACTCCGTATCTTTTGTACTTTAATTTTAGGATTCCCGAATTTCTGAAATTTTCGAACCGAGTTTTAAGGTTATTAATTGTTGTCTGAATTCTGAACTCGTCGATCCTTGAAACGCTTGAAATGAGAATAAAACCAGCTGGCAAATGTTTGCGGCGCCAGGCATAGTTGTTCAAACACAACCACACACACACAATCGTCCGCATCATATGATGTGGCATCATCAGTTGAAAAAGTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAGGTCACGCAAGTCCTA</pcr_primer_p1>
		<pcr_primer_p2>GATGAGAAAGAGACAAGTTGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>TAGAGGTCACGCAAGTCCTAGGCGGAAAAATCGTAAAAAATTCGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAAATATAAACAAAAAAAATTTTCCAACAAAAAATGCAAAGGTGCTCCACCGATGCCTCGTATTTTTTGGTTCTCTTTGGCTCCGTAGTTCAAATAGATTGTCACCATTTCTCACTCACTCGGTCACGCTTCGACCCCCGGTCCTTCTTTTCCTGCGCGCCTCTACAACTTGTCTCTTTCTCATC</canonical_amplicon>
		<polymorphic_amplicon>TAGAGGTCACGCAAGTCCTAGGCGGAAAAATCGTAAAAAATTCGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAAATATAAACAAAAAAAATTTTCCAACAAAAAATGCAAAGGTGCTCCACCGATGCCTCGTATTTTTTGGTTCTCTTTGGCTCCGTSGTTCAAATAGATTGTCACCATTTCTCACTCACTCGGTCACGCTTCGACCCCCGGTCCTTCTTTTCCTGCGCGCCTCTACAACTTGTCTCTTTCTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24920</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1414120</contig_pos>
        <strand>+</strand>
        <context>AGAGAGGCCA[A/G]CAGACTTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGCAAGAGGACAAAACGGAGAAGGAGGAGTAGCTGGGGAGAGAGGCCA</left_flank>
        <right_flank>CAGACTTTCTTTTCTTTTCTTCCTTTTTTTCCGTGTTTACTTTAATCATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGTTTATTCTTTTCAAAGTTTTTTTTGTCAATATTAAAATATAAAACTCACCAGCCTTGCTGTGCTCGATGATTCGGCAGTAGAAGACGATGTGATCCTCCGAAAATCGATAACGTCGACAAGAAAAGAACAGGGATATAGAGGTCACGCAAGTCCTAGGCGGAAAAATCGTAAAAAATTCGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAAATATAAACAAAAAAAATTTTCCAACAAAAAATGCAAAGGTGCTCCACCGATGCCTCGTATTTTTTGGTTCTCTTTGGCTCCGTAGTTCAAATAGATTGTCACCATTTCTCACTCACTCGGTCACGCTTCGACCCCCGGTCCTTCTTTTCCTGCGCGCCTCTACAACTTGTCTCTTTCTCATCGCGTTCCATTTGCTTTATCTTTTTTTTTGCTTCCTCGCAGTGAATGCAAGAGGACAAAACGGAGAAGGAGGAGTAGCTGGGGAGAGAGGCCAGCAGACTTTCTTTTCTTTTCTTCCTTTTTTTCCGTGTTTACTTTAATCATTTTCATTTCTGCACTATGATGCACTCCGTATCTTTTGTACTTTAATTTTAGGATTCCCGAATTTCTGAAATTTTCGAACCGAGTTTTAAGGTTATTAATTGTTGTCTGAATTCTGAACTCGTCGATCCTTGAAACGCTTGAAATGAGAATAAAACCAGCTGGCAAATGTTTGCGGCGCCAGGCATAGTTGTTCAAACACAACCACACACACACAATCGTCCGCATCATATGATGTGGCATCATCAGTTGAAAAAGTTTAAAATTTAGAGAAAAATTATTGTTTCGCAAGTAGTTGTTTCTATCTGAAAAACAACTCCTATTGGTCACTCGCTGTTTTTTTCTTCTTCCATTTCCTTTTTCGTCTTTCTTTTTTTCTCTCAATCCTCTTCCAAATTTGAAAAGAACACCTTCTTTTCTTTCTTCTTCCGCCCCCGCGAAAGTGTGTGATGAT</canonical>
            <polymorphic>TAGTTTATTCTTTTCAAAGTTTTTTTTGTCAATATTAAAATATAAAACTCACCAGCCTTGCTGTGCTCGATGATTCGGCAGTAGAAGACGATGTGATCCTCCGAAAATCGATAACGTCGACAAGAAAAGAACAGGGATATAGAGGTCACGCAAGTCCTAGGCGGAAAAATCGTAAAAAATTCGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAAATATAAACAAAAAAAATTTTCCAACAAAAAATGCAAAGGTGCTCCACCGATGCCTCGTATTTTTTGGTTCTCTTTGGCTCCGTAGTTCAAATAGATTGTCACCATTTCTCACTCACTCGGTCACGCTTCGACCCCCGGTCCTTCTTTTCCTGCGCGCCTCTACAACTTGTCTCTTTCTCATCGCGTTCCATTTGCTTTATCTTTTTTTTTGCTTCCTCGCAGTGAATGCAAGAGGACAAAACGGAGAAGGAGGAGTAGCTGGGGAGAGAGGCCARCAGACTTTCTTTTCTTTTCTTCCTTTTTTTCCGTGTTTACTTTAATCATTTTCATTTCTGCACTATGATGCACTCCGTATCTTTTGTACTTTAATTTTAGGATTCCCGAATTTCTGAAATTTTCGAACCGAGTTTTAAGGTTATTAATTGTTGTCTGAATTCTGAACTCGTCGATCCTTGAAACGCTTGAAATGAGAATAAAACCAGCTGGCAAATGTTTGCGGCGCCAGGCATAGTTGTTCAAACACAACCACACACACACAATCGTCCGCATCATATGATGTGGCATCATCAGTTGAAAAAGTTTAAAATTTAGAGAAAAATTATTGTTTCGCAAGTAGTTGTTTCTATCTGAAAAACAACTCCTATTGGTCACTCGCTGTTTTTTTCTTCTTCCATTTCCTTTTTCGTCTTTCTTTTTTTCTCTCAATCCTCTTCCAAATTTGAAAAGAACACCTTCTTTTCTTTCTTCTTCCGCCCCCGCGAAAGTGTGTGATGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>379 291 211 119</canonical_bands>
                <polymorphic_bands>379 330 291</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCCATTTGCTTTATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCAGACAACAATTAATAACCTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTCCATTTGCTTTATCTTTTTTTTTGCTTCCTCGCAGTGAATGCAAGAGGACAAAACGGAGAAGGAGGAGTAGCTGGGGAGAGAGGCCAGCAGACTTTCTTTTCTTTTCTTCCTTTTTTTCCGTGTTTACTTTAATCATTTTCATTTCTGCACTATGATGCACTCCGTATCTTTTGTACTTTAATTTTAGGATTCCCGAATTTCTGAAATTTTCGAACCGAGTTTTAAGGTTATTAATTGTTGTCTGA</canonical_amplicon>
		<polymorphic_amplicon>GTTCCATTTGCTTTATCTTTTTTTTTGCTTCCTCGCAGTGAATGCAAGAGGACAAAACGGAGAAGGAGGAGTAGCTGGGGAGAGAGGCCARCAGACTTTCTTTTCTTTTCTTCCTTTTTTTCCGTGTTTACTTTAATCATTTTCATTTCTGCACTATGATGCACTCCGTATCTTTTGTACTTTAATTTTAGGATTCCCGAATTTCTGAAATTTTCGAACCGAGTTTTAAGGTTATTAATTGTTGTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24921</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1414171</contig_pos>
        <strand>+</strand>
        <context>TTTAATCATT[G/T]TCATTTCTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAGACTTTCTTTTCTTTTCTTCCTTTTTTTCCGTGTTTACTTTAATCATT</left_flank>
        <right_flank>TCATTTCTGCACTATGATGCACTCCGTATCTTTTGTACTTTAATTTTAGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGCCTTGCTGTGCTCGATGATTCGGCAGTAGAAGACGATGTGATCCTCCGAAAATCGATAACGTCGACAAGAAAAGAACAGGGATATAGAGGTCACGCAAGTCCTAGGCGGAAAAATCGTAAAAAATTCGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAAATATAAACAAAAAAAATTTTCCAACAAAAAATGCAAAGGTGCTCCACCGATGCCTCGTATTTTTTGGTTCTCTTTGGCTCCGTAGTTCAAATAGATTGTCACCATTTCTCACTCACTCGGTCACGCTTCGACCCCCGGTCCTTCTTTTCCTGCGCGCCTCTACAACTTGTCTCTTTCTCATCGCGTTCCATTTGCTTTATCTTTTTTTTTGCTTCCTCGCAGTGAATGCAAGAGGACAAAACGGAGAAGGAGGAGTAGCTGGGGAGAGAGGCCAGCAGACTTTCTTTTCTTTTCTTCCTTTTTTTCCGTGTTTACTTTAATCATTTTCATTTCTGCACTATGATGCACTCCGTATCTTTTGTACTTTAATTTTAGGATTCCCGAATTTCTGAAATTTTCGAACCGAGTTTTAAGGTTATTAATTGTTGTCTGAATTCTGAACTCGTCGATCCTTGAAACGCTTGAAATGAGAATAAAACCAGCTGGCAAATGTTTGCGGCGCCAGGCATAGTTGTTCAAACACAACCACACACACACAATCGTCCGCATCATATGATGTGGCATCATCAGTTGAAAAAGTTTAAAATTTAGAGAAAAATTATTGTTTCGCAAGTAGTTGTTTCTATCTGAAAAACAACTCCTATTGGTCACTCGCTGTTTTTTTCTTCTTCCATTTCCTTTTTCGTCTTTCTTTTTTTCTCTCAATCCTCTTCCAAATTTGAAAAGAACACCTTCTTTTCTTTCTTCTTCCGCCCCCGCGAAAGTGTGTGATGATTTCATTTTCGCCCGCGATGTGTGTTGGTAGTAGAACACATTTGAATTTGAA</canonical>
            <polymorphic>CCAGCCTTGCTGTGCTCGATGATTCGGCAGTAGAAGACGATGTGATCCTCCGAAAATCGATAACGTCGACAAGAAAAGAACAGGGATATAGAGGTCACGCAAGTCCTAGGCGGAAAAATCGTAAAAAATTCGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAAATATAAACAAAAAAAATTTTCCAACAAAAAATGCAAAGGTGCTCCACCGATGCCTCGTATTTTTTGGTTCTCTTTGGCTCCGTAGTTCAAATAGATTGTCACCATTTCTCACTCACTCGGTCACGCTTCGACCCCCGGTCCTTCTTTTCCTGCGCGCCTCTACAACTTGTCTCTTTCTCATCGCGTTCCATTTGCTTTATCTTTTTTTTTGCTTCCTCGCAGTGAATGCAAGAGGACAAAACGGAGAAGGAGGAGTAGCTGGGGAGAGAGGCCAGCAGACTTTCTTTTCTTTTCTTCCTTTTTTTCCGTGTTTACTTTAATCATTKTCATTTCTGCACTATGATGCACTCCGTATCTTTTGTACTTTAATTTTAGGATTCCCGAATTTCTGAAATTTTCGAACCGAGTTTTAAGGTTATTAATTGTTGTCTGAATTCTGAACTCGTCGATCCTTGAAACGCTTGAAATGAGAATAAAACCAGCTGGCAAATGTTTGCGGCGCCAGGCATAGTTGTTCAAACACAACCACACACACACAATCGTCCGCATCATATGATGTGGCATCATCAGTTGAAAAAGTTTAAAATTTAGAGAAAAATTATTGTTTCGCAAGTAGTTGTTTCTATCTGAAAAACAACTCCTATTGGTCACTCGCTGTTTTTTTCTTCTTCCATTTCCTTTTTCGTCTTTCTTTTTTTCTCTCAATCCTCTTCCAAATTTGAAAAGAACACCTTCTTTTCTTTCTTCTTCCGCCCCCGCGAAAGTGTGTGATGATTTCATTTTCGCCCGCGATGTGTGTTGGTAGTAGAACACATTTGAATTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCCATTTGCTTTATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCAGACAACAATTAATAACCTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTCCATTTGCTTTATCTTTTTTTTTGCTTCCTCGCAGTGAATGCAAGAGGACAAAACGGAGAAGGAGGAGTAGCTGGGGAGAGAGGCCAGCAGACTTTCTTTTCTTTTCTTCCTTTTTTTCCGTGTTTACTTTAATCATTTTCATTTCTGCACTATGATGCACTCCGTATCTTTTGTACTTTAATTTTAGGATTCCCGAATTTCTGAAATTTTCGAACCGAGTTTTAAGGTTATTAATTGTTGTCTGA</canonical_amplicon>
		<polymorphic_amplicon>GTTCCATTTGCTTTATCTTTTTTTTTGCTTCCTCGCAGTGAATGCAAGAGGACAAAACGGAGAAGGAGGAGTAGCTGGGGAGAGAGGCCAGCAGACTTTCTTTTCTTTTCTTCCTTTTTTTCCGTGTTTACTTTAATCATTKTCATTTCTGCACTATGATGCACTCCGTATCTTTTGTACTTTAATTTTAGGATTCCCGAATTTCTGAAATTTTCGAACCGAGTTTTAAGGTTATTAATTGTTGTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24922</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1414220</contig_pos>
        <strand>+</strand>
        <context>TTTAATTTTA[C/G]GATTCCCGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTCATTTCTGCACTATGATGCACTCCGTATCTTTTGTACTTTAATTTTA</left_flank>
        <right_flank>GATTCCCGAATTTCTGAAATTTTCGAACCGAGTTTTAAGGTTATTAATTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGAAAATCGATAACGTCGACAAGAAAAGAACAGGGATATAGAGGTCACGCAAGTCCTAGGCGGAAAAATCGTAAAAAATTCGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAAATATAAACAAAAAAAATTTTCCAACAAAAAATGCAAAGGTGCTCCACCGATGCCTCGTATTTTTTGGTTCTCTTTGGCTCCGTAGTTCAAATAGATTGTCACCATTTCTCACTCACTCGGTCACGCTTCGACCCCCGGTCCTTCTTTTCCTGCGCGCCTCTACAACTTGTCTCTTTCTCATCGCGTTCCATTTGCTTTATCTTTTTTTTTGCTTCCTCGCAGTGAATGCAAGAGGACAAAACGGAGAAGGAGGAGTAGCTGGGGAGAGAGGCCAGCAGACTTTCTTTTCTTTTCTTCCTTTTTTTCCGTGTTTACTTTAATCATTTTCATTTCTGCACTATGATGCACTCCGTATCTTTTGTACTTTAATTTTAGGATTCCCGAATTTCTGAAATTTTCGAACCGAGTTTTAAGGTTATTAATTGTTGTCTGAATTCTGAACTCGTCGATCCTTGAAACGCTTGAAATGAGAATAAAACCAGCTGGCAAATGTTTGCGGCGCCAGGCATAGTTGTTCAAACACAACCACACACACACAATCGTCCGCATCATATGATGTGGCATCATCAGTTGAAAAAGTTTAAAATTTAGAGAAAAATTATTGTTTCGCAAGTAGTTGTTTCTATCTGAAAAACAACTCCTATTGGTCACTCGCTGTTTTTTTCTTCTTCCATTTCCTTTTTCGTCTTTCTTTTTTTCTCTCAATCCTCTTCCAAATTTGAAAAGAACACCTTCTTTTCTTTCTTCTTCCGCCCCCGCGAAAGTGTGTGATGATTTCATTTTCGCCCGCGATGTGTGTTGGTAGTAGAACACATTTGAATTTGAATCGACACATTTCGGTTAGATTCGTTAGAAAATCAAGAGAAATCTTTATT</canonical>
            <polymorphic>CCGAAAATCGATAACGTCGACAAGAAAAGAACAGGGATATAGAGGTCACGCAAGTCCTAGGCGGAAAAATCGTAAAAAATTCGGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAAATATAAACAAAAAAAATTTTCCAACAAAAAATGCAAAGGTGCTCCACCGATGCCTCGTATTTTTTGGTTCTCTTTGGCTCCGTAGTTCAAATAGATTGTCACCATTTCTCACTCACTCGGTCACGCTTCGACCCCCGGTCCTTCTTTTCCTGCGCGCCTCTACAACTTGTCTCTTTCTCATCGCGTTCCATTTGCTTTATCTTTTTTTTTGCTTCCTCGCAGTGAATGCAAGAGGACAAAACGGAGAAGGAGGAGTAGCTGGGGAGAGAGGCCAGCAGACTTTCTTTTCTTTTCTTCCTTTTTTTCCGTGTTTACTTTAATCATTTTCATTTCTGCACTATGATGCACTCCGTATCTTTTGTACTTTAATTTTASGATTCCCGAATTTCTGAAATTTTCGAACCGAGTTTTAAGGTTATTAATTGTTGTCTGAATTCTGAACTCGTCGATCCTTGAAACGCTTGAAATGAGAATAAAACCAGCTGGCAAATGTTTGCGGCGCCAGGCATAGTTGTTCAAACACAACCACACACACACAATCGTCCGCATCATATGATGTGGCATCATCAGTTGAAAAAGTTTAAAATTTAGAGAAAAATTATTGTTTCGCAAGTAGTTGTTTCTATCTGAAAAACAACTCCTATTGGTCACTCGCTGTTTTTTTCTTCTTCCATTTCCTTTTTCGTCTTTCTTTTTTTCTCTCAATCCTCTTCCAAATTTGAAAAGAACACCTTCTTTTCTTTCTTCTTCCGCCCCCGCGAAAGTGTGTGATGATTTCATTTTCGCCCGCGATGTGTGTTGGTAGTAGAACACATTTGAATTTGAATCGACACATTTCGGTTAGATTCGTTAGAAAATCAAGAGAAATCTTTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTTTCTTTTCTTCCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGGTTGTGTTTGAACAACTATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTTTCTTTTCTTCCTTTTTTTCCGTGTTTACTTTAATCATTTTCATTTCTGCACTATGATGCACTCCGTATCTTTTGTACTTTAATTTTAGGATTCCCGAATTTCTGAAATTTTCGAACCGAGTTTTAAGGTTATTAATTGTTGTCTGAATTCTGAACTCGTCGATCCTTGAAACGCTTGAAATGAGAATAAAACCAGCTGGCAAATGTTTGCGGCGCCAGGCATAGTTGTTCAAACACAACCA</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTTTCTTTTCTTCCTTTTTTTCCGTGTTTACTTTAATCATTTTCATTTCTGCACTATGATGCACTCCGTATCTTTTGTACTTTAATTTTASGATTCCCGAATTTCTGAAATTTTCGAACCGAGTTTTAAGGTTATTAATTGTTGTCTGAATTCTGAACTCGTCGATCCTTGAAACGCTTGAAATGAGAATAAAACCAGCTGGCAAATGTTTGCGGCGCCAGGCATAGTTGTTCAAACACAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24923</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1414331</contig_pos>
        <strand>+</strand>
        <context>AAACCAGCTG[A/G]CAAATGTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGAACTCGTCGATCCTTGAAACGCTTGAAATGAGAATAAAACCAGCTG</left_flank>
        <right_flank>CAAATGTTTGCGGCGCCAGGCATAGTTGTTCAAACACAACCACACACACA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGAGACAGAGAAATATAAACAAAAAAAATTTTCCAACAAAAAATGCAAAGGTGCTCCACCGATGCCTCGTATTTTTTGGTTCTCTTTGGCTCCGTAGTTCAAATAGATTGTCACCATTTCTCACTCACTCGGTCACGCTTCGACCCCCGGTCCTTCTTTTCCTGCGCGCCTCTACAACTTGTCTCTTTCTCATCGCGTTCCATTTGCTTTATCTTTTTTTTTGCTTCCTCGCAGTGAATGCAAGAGGACAAAACGGAGAAGGAGGAGTAGCTGGGGAGAGAGGCCAGCAGACTTTCTTTTCTTTTCTTCCTTTTTTTCCGTGTTTACTTTAATCATTTTCATTTCTGCACTATGATGCACTCCGTATCTTTTGTACTTTAATTTTAGGATTCCCGAATTTCTGAAATTTTCGAACCGAGTTTTAAGGTTATTAATTGTTGTCTGAATTCTGAACTCGTCGATCCTTGAAACGCTTGAAATGAGAATAAAACCAGCTGGCAAATGTTTGCGGCGCCAGGCATAGTTGTTCAAACACAACCACACACACACAATCGTCCGCATCATATGATGTGGCATCATCAGTTGAAAAAGTTTAAAATTTAGAGAAAAATTATTGTTTCGCAAGTAGTTGTTTCTATCTGAAAAACAACTCCTATTGGTCACTCGCTGTTTTTTTCTTCTTCCATTTCCTTTTTCGTCTTTCTTTTTTTCTCTCAATCCTCTTCCAAATTTGAAAAGAACACCTTCTTTTCTTTCTTCTTCCGCCCCCGCGAAAGTGTGTGATGATTTCATTTTCGCCCGCGATGTGTGTTGGTAGTAGAACACATTTGAATTTGAATCGACACATTTCGGTTAGATTCGTTAGAAAATCAAGAGAAATCTTTATTGAATTCAAGATGAGATTTATTGGAACCTAGAATAAACATTAATTCTTCACAAGACGTCTTCCAGAAAATCGGATGCAGAAGAGAAAAAAAGCCAGAGCGCTTCTTCCTCTT</canonical>
            <polymorphic>AGAGAGACAGAGAAATATAAACAAAAAAAATTTTCCAACAAAAAATGCAAAGGTGCTCCACCGATGCCTCGTATTTTTTGGTTCTCTTTGGCTCCGTAGTTCAAATAGATTGTCACCATTTCTCACTCACTCGGTCACGCTTCGACCCCCGGTCCTTCTTTTCCTGCGCGCCTCTACAACTTGTCTCTTTCTCATCGCGTTCCATTTGCTTTATCTTTTTTTTTGCTTCCTCGCAGTGAATGCAAGAGGACAAAACGGAGAAGGAGGAGTAGCTGGGGAGAGAGGCCAGCAGACTTTCTTTTCTTTTCTTCCTTTTTTTCCGTGTTTACTTTAATCATTTTCATTTCTGCACTATGATGCACTCCGTATCTTTTGTACTTTAATTTTAGGATTCCCGAATTTCTGAAATTTTCGAACCGAGTTTTAAGGTTATTAATTGTTGTCTGAATTCTGAACTCGTCGATCCTTGAAACGCTTGAAATGAGAATAAAACCAGCTGRCAAATGTTTGCGGCGCCAGGCATAGTTGTTCAAACACAACCACACACACACAATCGTCCGCATCATATGATGTGGCATCATCAGTTGAAAAAGTTTAAAATTTAGAGAAAAATTATTGTTTCGCAAGTAGTTGTTTCTATCTGAAAAACAACTCCTATTGGTCACTCGCTGTTTTTTTCTTCTTCCATTTCCTTTTTCGTCTTTCTTTTTTTCTCTCAATCCTCTTCCAAATTTGAAAAGAACACCTTCTTTTCTTTCTTCTTCCGCCCCCGCGAAAGTGTGTGATGATTTCATTTTCGCCCGCGATGTGTGTTGGTAGTAGAACACATTTGAATTTGAATCGACACATTTCGGTTAGATTCGTTAGAAAATCAAGAGAAATCTTTATTGAATTCAAGATGAGATTTATTGGAACCTAGAATAAACATTAATTCTTCACAAGACGTCTTCCAGAAAATCGGATGCAGAAGAGAAAAAAAGCCAGAGCGCTTCTTCCTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>303 211 199 168 119</canonical_bands>
                <polymorphic_bands>514 199 168 119</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGAGTTTTAAGGTTATTAATTG</pcr_primer_p1>
		<pcr_primer_p2>AGTGACCAATAGGAGTTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCGAGTTTTAAGGTTATTAATTGTTGTCTGAATTCTGAACTCGTCGATCCTTGAAACGCTTGAAATGAGAATAAAACCAGCTGGCAAATGTTTGCGGCGCCAGGCATAGTTGTTCAAACACAACCACACACACACAATCGTCCGCATCATATGATGTGGCATCATCAGTTGAAAAAGTTTAAAATTTAGAGAAAAATTATTGTTTCGCAAGTAGTTGTTTCTATCTGAAAAACAACTCCTATTGGTCACT</canonical_amplicon>
		<polymorphic_amplicon>CCGAGTTTTAAGGTTATTAATTGTTGTCTGAATTCTGAACTCGTCGATCCTTGAAACGCTTGAAATGAGAATAAAACCAGCTGRCAAATGTTTGCGGCGCCAGGCATAGTTGTTCAAACACAACCACACACACACAATCGTCCGCATCATATGATGTGGCATCATCAGTTGAAAAAGTTTAAAATTTAGAGAAAAATTATTGTTTCGCAAGTAGTTGTTTCTATCTGAAAAACAACTCCTATTGGTCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24924</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1431292</contig_pos>
        <strand></strand>
        <context>ctgatcttct[G/A]cggtgcagtt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GATTCTGTGCGAATTTCCACTGACCCTTTATCTGACGTCACTGATCTTCT</left_flank>
        <right_flank>CGGTGCAGTTTCCAAAATTTTCCTTCCTCTTCCAAGACAGTCCTTAAGTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGAACCACTATTGAGTCATTATGAAGATGTGGGCTAGAGCTCTGTTCGGTTGGAAACCCCAACAAACTTTTAATAAGTGGATTTGGGCCTATGGAGTACAAAATCTTCGAAATTTTGTCCTCCTTGCTGATTTTGACACTCTTATCGACGAAAAGAAGTGAAATCTTGCCAATTGAGCAAAATGATTCCTGCGATGTCTGAGCTAGCATTTGTTGATTTCGGGAGTTGGACTCCAAGGCAAACGACGTCTCGTCTGAGAAGACCTCTCCAGACGTCCATGTCGCGTGCGCTTGAGGAAGAGGTTTGCCTTCTCGAGCCGTATCAGCTTATTGACGGTAGAGAGAATGACCACTTTTTTCACCCATTGAAGGGTCATATTGAGCTTCTTCTTGGCAAGCTTTGTTATGGAATACCTGATATTTTGGTATTGCTAGCCATCGTTTTCATGATTCTGTGCGAATTTCCACTGACCCTTTATCTGACGTCACTGATCTTCTGCGGTGCAGTTTCCAAAATTTTCCTTCCTCTTCCAAGACAGTCCTTAAGTGTGCCAAGCCCCTGGAAATGCTTGATTGCATCACAAACGGTTCTGCTTGGAACCTGGAGACGTTTTATGACGGACTGTCGGCACTGCCTTTGTTTGAAAGGGCGATGAAGGAAGTAGGTTCGGATGGGAAGGTGCCATTCGCCTCAAAGTCAACGGATTGACTTGAAACTTTTCACAATAGTTGACAACAAGTTGATTAATAAAACAAAAATTATTATAGGTACGAGAAACGCACCAGGCGGTTACGCCATGGCGTCAAACTTTTTTGCGGGTAATTAACAGCCACCCTGTACTTAATTTCACAAAAATTGAAATCCAGAAATCCCAGAGTAAAAGAATCCAACCTTTCATGTAAATTCGAACTGTTTTTATTCTGATAGCTCAACAAAATCAGTTTATTTGAAACAGTTTTTTATATTGAGAATGTTTCAATTTTTTGAAAATTGAAATC</canonical>
            <polymorphic>CTCGAACCACTATTGAGTCATTATGAAGATGTGGGCTAGAGCTCTGTTCGGTTGGAAACCCCAACAAACTTTTAATAAGTGGATTTGGGCCTATGGAGTACAAAATCTTCGAAATTTTGTCCTCCTTGCTGATTTTGACACTCTTATCGACGAAAAGAAGTGAAATCTTGCCAATTGAGCAAAATGATTCCTGCGATGTCTGAGCTAGCATTTGTTGATTTCGGGAGTTGGACTCCAAGGCAAACGACGTCTCGTCTGAGAAGACCTCTCCAGACGTCCATGTCGCGTGCGCTTGAGGAAGAGGTTTGCCTTCTCGAGCCGTATCAGCTTATTGACGGTAGAGAGAATGACCACTTTTTTCACCCATTGAAGGGTCATATTGAGCTTCTTCTTGGCAAGCTTTGTTATGGAATACCTGATATTTTGGTATTGCTAGCCATCGTTTTCATGATTCTGTGCGAATTTCCACTGACCCTTTATCTGACGTCACTGATCTTCTRCGGTGCAGTTTCCAAAATTTTCCTTCCTCTTCCAAGACAGTCCTTAAGTGTGCCAAGCCCCTGGAAATGCTTGATTGCATCACAAACGGTTCTGCTTGGAACCTGGAGACGTTTTATGACGGACTGTCGGCACTGCCTTTGTTTGAAAGGGCGATGAAGGAAGTAGGTTCGGATGGGAAGGTGCCATTCGCCTCAAAGTCAACGGATTGACTTGAAACTTTTCACAATAGTTGACAACAAGTTGATTAATAAAACAAAAATTATTATAGGTACGAGAAACGCACCAGGCGGTTACGCCATGGCGTCAAACTTTTTTGCGGGTAATTAACAGCCACCCTGTACTTAATTTCACAAAAATTGAAATCCAGAAATCCCAGAGTAAAAGAATCCAACCTTTCATGTAAATTCGAACTGTTTTTATTCTGATAGCTCAACAAAATCAGTTTATTTGAAACAGTTTTTTATATTGAGAATGTTTCAATTTTTTGAAAATTGAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGTTGATTTCGGGAGTT</pcr_primer_p1>
		<pcr_primer_p2>GGATTTCAATTTTTGTGAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>657</pcr_amplicon_size>
		<canonical_amplicon>ATTTGTTGATTTCGGGAGTTGGACTCCAAGGCAAACGACGTCTCGTCTGAGAAGACCTCTCCAGACGTCCATGTCGCGTGCGCTTGAGGAAGAGGTTTGCCTTCTCGAGCCGTATCAGCTTATTGACGGTAGAGAGAATGACCACTTTTTTCACCCATTGAAGGGTCATATTGAGCTTCTTCTTGGCAAGCTTTGTTATGGAATACCTGATATTTTGGTATTGCTAGCCATCGTTTTCATGATTCTGTGCGAATTTCCACTGACCCTTTATCTGACGTCACTGATCTTCTGCGGTGCAGTTTCCAAAATTTTCCTTCCTCTTCCAAGACAGTCCTTAAGTGTGCCAAGCCCCTGGAAATGCTTGATTGCATCACAAACGGTTCTGCTTGGAACCTGGAGACGTTTTATGACGGACTGTCGGCACTGCCTTTGTTTGAAAGGGCGATGAAGGAAGTAGGTTCGGATGGGAAGGTGCCATTCGCCTCAAAGTCAACGGATTGACTTGAAACTTTTCACAATAGTTGACAACAAGTTGATTAATAAAACAAAAATTATTATAGGTACGAGAAACGCACCAGGCGGTTACGCCATGGCGTCAAACTTTTTTGCGGGTAATTAACAGCCACCCTGTACTTAATTTCACAAAAATTGAAATCC</canonical_amplicon>
		<polymorphic_amplicon>ATTTGTTGATTTCGGGAGTTGGACTCCAAGGCAAACGACGTCTCGTCTGAGAAGACCTCTCCAGACGTCCATGTCGCGTGCGCTTGAGGAAGAGGTTTGCCTTCTCGAGCCGTATCAGCTTATTGACGGTAGAGAGAATGACCACTTTTTTCACCCATTGAAGGGTCATATTGAGCTTCTTCTTGGCAAGCTTTGTTATGGAATACCTGATATTTTGGTATTGCTAGCCATCGTTTTCATGATTCTGTGCGAATTTCCACTGACCCTTTATCTGACGTCACTGATCTTCTRCGGTGCAGTTTCCAAAATTTTCCTTCCTCTTCCAAGACAGTCCTTAAGTGTGCCAAGCCCCTGGAAATGCTTGATTGCATCACAAACGGTTCTGCTTGGAACCTGGAGACGTTTTATGACGGACTGTCGGCACTGCCTTTGTTTGAAAGGGCGATGAAGGAAGTAGGTTCGGATGGGAAGGTGCCATTCGCCTCAAAGTCAACGGATTGACTTGAAACTTTTCACAATAGTTGACAACAAGTTGATTAATAAAACAAAAATTATTATAGGTACGAGAAACGCACCAGGCGGTTACGCCATGGCGTCAAACTTTTTTGCGGGTAATTAACAGCCACCCTGTACTTAATTTCACAAAAATTGAAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24925</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1453443</contig_pos>
        <strand>+</strand>
        <context>AATTCGTAAA[A/T]YTCGTAAACG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTACAATTTTACGAGTACCAAAAAATCCTAAAATCCGTAAAATTCGTAAA</left_flank>
        <right_flank>CTCGTAAACGTAAAATCACATCCCTGATACACATGTTCCAATTTCAGGAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACAACACATACACATCAGGGATGTGCGTAAAATTATTTATTTTACGAATTTCGTAAAACGTAAAATTTTACGAATTACAAACTCGTAAAATCGTAAAATCCGTAAAATCCGTAAAAAACTGAATCTTCTATTCAAATGAAAGAAAAACTGCATTTTCATCACTAAGCATTTGAGAAATGGTGTGCAATTATTTCAAACCGCAGAATTCAATGTTTTTGTAGGTGTTATCAATTTTCTGGAACTTTTTTTTTTTTAATTCTAAACTGGCGAAAAGACATTCAAAAATTGGAAAATATTTTTTGATAACAAAGAAAATTTCTGATTCGAATTTTTTGAATATGATCTACTCAAAATTAAATTAAAAACTTGATCATGGATATAAAAACTGCCAATTGATAAAAACACTTCCAGTTTTTACGAATTTTACGGATTAAATTTTACGACACTCGTACAATTTTACGAGTACCAAAAAATCCTAAAATCCGTAAAATTCGTAAATCTCGTAAACGTAAAATCACATCCCTGATACACATGTTCCAATTTCAGGATTTCCATAAAAAAGAGAGGTGCGCATCTTTTCTTTTCTCACAAAATGACAAATTTGGAATTCAAATTTGAACAATGGTTGATTGAGTGCAAATTGGTGGATGATGAGGTTGCAAAAAAGATGACAGCTATACGATTGAAAGAAACGAACCTTTGATTTATACCAAAAACAGAAAATGAGATAGCTTAAAAGTAGGTTCGGTGGTTTAAGGCATGAAAGTAAGGGCGGTGATTGATGACAGTATATCACAATTTTTAATTAAAATGGTGGTGGTTTCTCCTATATGAGTCCGTATAGTTTTTTAATTTTCGAAAACTGAGAGCCATATATCCACATCTATCCAGATTGATGGAGGACAGTAGATAAATGAAATTTTTAATGGAAATGTTTTCTACATCTTAGCCAGTTCACTGATCCATTGAACATGAGAAGGTAGGAGAATTTCAGTTTCT</canonical>
            <polymorphic>CACAACACATACACATCAGGGATGTGCGTAAAATTATTTATTTTACGAATTTCGTAAAACGTAAAATTTTACGAATTACAAACTCGTAAAATCGTAAAATCCGTAAAATCCGTAAAAAACTGAATCTTCTATTCAAATGAAAGAAAAACTGCATTTTCATCACTAAGCATTTGAGAAATGGTGTGCAATTATTTCAAACCGCAGAATTCAATGTTTTTGTAGGTGTTATCAATTTTCTGGAACTTTTTTTTTTTTAATTCTAAACTGGCGAAAAGACATTCAAAAATTGGAAAATATTTTTTGATAACAAAGAAAATTTCTGATTCGAATTTTTTGAATATGATCTACTCAAAATTAAATTAAAAACTTGATCATGGATATAAAAACTGCCAATTGATAAAAACACTTCCAGTTTTTACGAATTTTACGGATTAAATTTTACGACACTCGTACAATTTTACGAGTACCAAAAAATCCTAAAATCCGTAAAATTCGTAAAWCTCGTAAACGTAAAATCACATCCCTGATACACATGTTCCAATTTCAGGATTTCCATAAAAAAGAGAGGTGCGCATCTTTTCTTTTCTCACAAAATGACAAATTTGGAATTCAAATTTGAACAATGGTTGATTGAGTGCAAATTGGTGGATGATGAGGTTGCAAAAAAGATGACAGCTATACGATTGAAAGAAACGAACCTTTGATTTATACCAAAAACAGAAAATGAGATAGCTTAAAAGTAGGTTCGGTGGTTTAAGGCATGAAAGTAAGGGCGGTGATTGATGACAGTATATCACAATTTTTAATTAAAATGGTGGTGGTTTCTCCTATATGAGTCCGTATAGTTTTTTAATTTTCGAAAACTGAGAGCCATATATCCACATCTATCCAGATTGATGGAGGACAGTAGATAAATGAAATTTTTAATGGAAATGTTTTCTACATCTTAGCCAGTTCACTGATCCATTGAACATGAGAAGGTAGGAGAATTTCAGTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTGATAAAAACACTTCCAGT</pcr_primer_p1>
		<pcr_primer_p2>TCAATCAACCATTGTTCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAATTGATAAAAACACTTCCAGTTTTTACGAATTTTACGGATTAAATTTTACGACACTCGTACAATTTTACGAGTACCAAAAAATCCTAAAATCCGTAAAATTCGTAAATCTCGTAAACGTAAAATCACATCCCTGATACACATGTTCCAATTTCAGGATTTCCATAAAAAAGAGAGGTGCGCATCTTTTCTTTTCTCACAAAATGACAAATTTGGAATTCAAATTTGAACAATGGTTGATTGA</canonical_amplicon>
		<polymorphic_amplicon>CAATTGATAAAAACACTTCCAGTTTTTACGAATTTTACGGATTAAATTTTACGACACTCGTACAATTTTACGAGTACCAAAAAATCCTAAAATCCGTAAAATTCGTAAAWCTCGTAAACGTAAAATCACATCCCTGATACACATGTTCCAATTTCAGGATTTCCATAAAAAAGAGAGGTGCGCATCTTTTCTTTTCTCACAAAATGACAAATTTGGAATTCAAATTTGAACAATGGTTGATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24926</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1453444</contig_pos>
        <strand>+</strand>
        <context>ATTCGTAAAW[C/T]TCGTAAACGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACAATTTTACGAGTACCAAAAAATCCTAAAATCCGTAAAATTCGTAAAT</left_flank>
        <right_flank>TCGTAAACGTAAAATCACATCCCTGATACACATGTTCCAATTTCAGGATT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAACACATACACATCAGGGATGTGCGTAAAATTATTTATTTTACGAATTTCGTAAAACGTAAAATTTTACGAATTACAAACTCGTAAAATCGTAAAATCCGTAAAATCCGTAAAAAACTGAATCTTCTATTCAAATGAAAGAAAAACTGCATTTTCATCACTAAGCATTTGAGAAATGGTGTGCAATTATTTCAAACCGCAGAATTCAATGTTTTTGTAGGTGTTATCAATTTTCTGGAACTTTTTTTTTTTTAATTCTAAACTGGCGAAAAGACATTCAAAAATTGGAAAATATTTTTTGATAACAAAGAAAATTTCTGATTCGAATTTTTTGAATATGATCTACTCAAAATTAAATTAAAAACTTGATCATGGATATAAAAACTGCCAATTGATAAAAACACTTCCAGTTTTTACGAATTTTACGGATTAAATTTTACGACACTCGTACAATTTTACGAGTACCAAAAAATCCTAAAATCCGTAAAATTCGTAAATCTCGTAAACGTAAAATCACATCCCTGATACACATGTTCCAATTTCAGGATTTCCATAAAAAAGAGAGGTGCGCATCTTTTCTTTTCTCACAAAATGACAAATTTGGAATTCAAATTTGAACAATGGTTGATTGAGTGCAAATTGGTGGATGATGAGGTTGCAAAAAAGATGACAGCTATACGATTGAAAGAAACGAACCTTTGATTTATACCAAAAACAGAAAATGAGATAGCTTAAAAGTAGGTTCGGTGGTTTAAGGCATGAAAGTAAGGGCGGTGATTGATGACAGTATATCACAATTTTTAATTAAAATGGTGGTGGTTTCTCCTATATGAGTCCGTATAGTTTTTTAATTTTCGAAAACTGAGAGCCATATATCCACATCTATCCAGATTGATGGAGGACAGTAGATAAATGAAATTTTTAATGGAAATGTTTTCTACATCTTAGCCAGTTCACTGATCCATTGAACATGAGAAGGTAGGAGAATTTCAGTTTCTT</canonical>
            <polymorphic>ACAACACATACACATCAGGGATGTGCGTAAAATTATTTATTTTACGAATTTCGTAAAACGTAAAATTTTACGAATTACAAACTCGTAAAATCGTAAAATCCGTAAAATCCGTAAAAAACTGAATCTTCTATTCAAATGAAAGAAAAACTGCATTTTCATCACTAAGCATTTGAGAAATGGTGTGCAATTATTTCAAACCGCAGAATTCAATGTTTTTGTAGGTGTTATCAATTTTCTGGAACTTTTTTTTTTTTAATTCTAAACTGGCGAAAAGACATTCAAAAATTGGAAAATATTTTTTGATAACAAAGAAAATTTCTGATTCGAATTTTTTGAATATGATCTACTCAAAATTAAATTAAAAACTTGATCATGGATATAAAAACTGCCAATTGATAAAAACACTTCCAGTTTTTACGAATTTTACGGATTAAATTTTACGACACTCGTACAATTTTACGAGTACCAAAAAATCCTAAAATCCGTAAAATTCGTAAATYTCGTAAACGTAAAATCACATCCCTGATACACATGTTCCAATTTCAGGATTTCCATAAAAAAGAGAGGTGCGCATCTTTTCTTTTCTCACAAAATGACAAATTTGGAATTCAAATTTGAACAATGGTTGATTGAGTGCAAATTGGTGGATGATGAGGTTGCAAAAAAGATGACAGCTATACGATTGAAAGAAACGAACCTTTGATTTATACCAAAAACAGAAAATGAGATAGCTTAAAAGTAGGTTCGGTGGTTTAAGGCATGAAAGTAAGGGCGGTGATTGATGACAGTATATCACAATTTTTAATTAAAATGGTGGTGGTTTCTCCTATATGAGTCCGTATAGTTTTTTAATTTTCGAAAACTGAGAGCCATATATCCACATCTATCCAGATTGATGGAGGACAGTAGATAAATGAAATTTTTAATGGAAATGTTTTCTACATCTTAGCCAGTTCACTGATCCATTGAACATGAGAAGGTAGGAGAATTTCAGTTTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTGATAAAAACACTTCCAGT</pcr_primer_p1>
		<pcr_primer_p2>TCAATCAACCATTGTTCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAATTGATAAAAACACTTCCAGTTTTTACGAATTTTACGGATTAAATTTTACGACACTCGTACAATTTTACGAGTACCAAAAAATCCTAAAATCCGTAAAATTCGTAAATCTCGTAAACGTAAAATCACATCCCTGATACACATGTTCCAATTTCAGGATTTCCATAAAAAAGAGAGGTGCGCATCTTTTCTTTTCTCACAAAATGACAAATTTGGAATTCAAATTTGAACAATGGTTGATTGA</canonical_amplicon>
		<polymorphic_amplicon>CAATTGATAAAAACACTTCCAGTTTTTACGAATTTTACGGATTAAATTTTACGACACTCGTACAATTTTACGAGTACCAAAAAATCCTAAAATCCGTAAAATTCGTAAATYTCGTAAACGTAAAATCACATCCCTGATACACATGTTCCAATTTCAGGATTTCCATAAAAAAGAGAGGTGCGCATCTTTTCTTTTCTCACAAAATGACAAATTTGGAATTCAAATTTGAACAATGGTTGATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24927</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1494994</contig_pos>
        <strand>+</strand>
        <context>CTAATTTTTA[A/G]ATTCAAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTATTTTCAGTTTGTTTATAATGTGAGTTATAGTTATAGCTAATTTTTA</left_flank>
        <right_flank>ATTCAAAATTTATAGTTTTCATTAAAAACCGTTTTCAGGGATTTGGATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTATCTCGGAACGCTGTCAAACTGCAAATTGGTGTAGACACTCAAGTTGTGTGACTGGCATACAGGCATACAGATCAGAAAGTGCGATTCCTCTTCTTTTTCTTTTTTTTTCAATTTTTTTCTTACCTCTATTCCGAGTAGTGAAAGTCTTGTTTGCGTGCGTTTGTGCCACCATCATCTCCCACCAACCGGGGTTAATATTTGCAATGGTATTTACCCGAAGGAGACACGACTTAGAGAGTTTGAGACCGTCATTCATTCTTTTTGCCCCGTCCGATTTTCTCATTATCTTCGTTGATTTTATGATTACCACTGTACTTTTTCAGGAATCAGGAAAAATGAATTTCGAATTTTTGCGGACGCTGCACGGCTTCATCAATTTCATCCAAGTCTTGTTCGGATTCGCTGCTCTTTTTGCGTGCTCTTTCATCTGGAGGGATACTAATCTCTATTTTCAGTTTGTTTATAATGTGAGTTATAGTTATAGCTAATTTTTAAATTCAAAATTTATAGTTTTCATTAAAAACCGTTTTCAGGGATTTGGATGGCAAACTCTAGTTTTGGCAATATTGTTTTTCACTTGGATTTTTGCTGTAATGGTATTCCTGTCAAACCTCTTCGACAAAGATGTTGTTGGAACTATTGGAAAAATGAAGGTGAATTTAATAAATTACAGTCCCGGTCAATAAGATCTACAACTGTATATTTTTTGGTAGATTTTCGACCTTTTTGACCTTTTTAAGGAGTCTGGAGCTCGGCTGTCAAGTTTTCAATCTATTAGAAATTACTTGGAGGGTGTTAAACAGACCTCGATTTCAAACATTGATAGAGTTTTTTGAAGCGCCTCGTTTCTCAGCTAATTGTAGATGTCTGAAATATGCCAATTTTTTGACCAATTTTCGTACTGACAGCGTGAAAAACGGATGTCGTTCAGAAGTCGGCAAATAACTGAATAAAACAACTTCCAATATAAAGATACCATAAAAACTCTAATTTAA</canonical>
            <polymorphic>AACTATCTCGGAACGCTGTCAAACTGCAAATTGGTGTAGACACTCAAGTTGTGTGACTGGCATACAGGCATACAGATCAGAAAGTGCGATTCCTCTTCTTTTTCTTTTTTTTTCAATTTTTTTCTTACCTCTATTCCGAGTAGTGAAAGTCTTGTTTGCGTGCGTTTGTGCCACCATCATCTCCCACCAACCGGGGTTAATATTTGCAATGGTATTTACCCGAAGGAGACACGACTTAGAGAGTTTGAGACCGTCATTCATTCTTTTTGCCCCGTCCGATTTTCTCATTATCTTCGTTGATTTTATGATTACCACTGTACTTTTTCAGGAATCAGGAAAAATGAATTTCGAATTTTTGCGGACGCTGCACGGCTTCATCAATTTCATCCAAGTCTTGTTCGGATTCGCTGCTCTTTTTGCGTGCTCTTTCATCTGGAGGGATACTAATCTCTATTTTCAGTTTGTTTATAATGTGAGTTATAGTTATAGCTAATTTTTARATTCAAAATTTATAGTTTTCATTAAAAACCGTTTTCAGGGATTTGGATGGCAAACTCTAGTTTTGGCAATATTGTTTTTCACTTGGATTTTTGCTGTAATGGTATTCCTGTCAAACCTCTTCGACAAAGATGTTGTTGGAACTATTGGAAAAATGAAGGTGAATTTAATAAATTACAGTCCCGGTCAATAAGATCTACAACTGTATATTTTTTGGTAGATTTTCGACCTTTTTGACCTTTTTAAGGAGTCTGGAGCTCGGCTGTCAAGTTTTCAATCTATTAGAAATTACTTGGAGGGTGTTAAACAGACCTCGATTTCAAACATTGATAGAGTTTTTTGAAGCGCCTCGTTTCTCAGCTAATTGTAGATGTCTGAAATATGCCAATTTTTTGACCAATTTTCGTACTGACAGCGTGAAAAACGGATGTCGTTCAGAAGTCGGCAAATAACTGAATAAAACAACTTCCAATATAAAGATACCATAAAAACTCTAATTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>343 339 155 149 7 7</canonical_bands>
                <polymorphic_bands>343 339 156 155 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>300 197 196 143 76 60 25 3</canonical_bands>
                <polymorphic_bands>325 197 196 143 76 60 3</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>229 155 114 112 97 86 76 29 28 24 12 9 8 7 7 7</canonical_bands>
                <polymorphic_bands>229 155 114 112 97 86 76 29 28 24 15 12 9 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTCATCTGGAGGGATACTAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTATTAAATTCACCTTCATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTTTCATCTGGAGGGATACTAATCTCTATTTTCAGTTTGTTTATAATGTGAGTTATAGTTATAGCTAATTTTTAAATTCAAAATTTATAGTTTTCATTAAAAACCGTTTTCAGGGATTTGGATGGCAAACTCTAGTTTTGGCAATATTGTTTTTCACTTGGATTTTTGCTGTAATGGTATTCCTGTCAAACCTCTTCGACAAAGATGTTGTTGGAACTATTGGAAAAATGAAGGTGAATTTAATAAA</canonical_amplicon>
		<polymorphic_amplicon>CTTTCATCTGGAGGGATACTAATCTCTATTTTCAGTTTGTTTATAATGTGAGTTATAGTTATAGCTAATTTTTARATTCAAAATTTATAGTTTTCATTAAAAACCGTTTTCAGGGATTTGGATGGCAAACTCTAGTTTTGGCAATATTGTTTTTCACTTGGATTTTTGCTGTAATGGTATTCCTGTCAAACCTCTTCGACAAAGATGTTGTTGGAACTATTGGAAAAATGAAGGTGAATTTAATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24928</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1500469</contig_pos>
        <strand>+</strand>
        <context>TATTTATAGG[A/G]CATCTTGACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACATTAATGGAACAACCCAATATGAGAGAAAAATGTGTTTATTTATAGG</left_flank>
        <right_flank>CATCTTGACCTCAAAGAAACCAAACAACCACAGAAACTAGAAAAAGCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCCACTCGGGCAAGATGATCCCATTTTCAAAACACAAAGCCTTTCGTCAGTCCAAGCTATAATTTCGAAAATCTTCTTTGAAAAATCAAAATCGACTTACATTGACTAATCTGATTTATCATTCGATGAGGTGGCGGTGAGGAATATAGTGGAGCTCCTGATATAAGAGTCATACAGAAAAATGTGATGATTACAGTATACAAAAAATCCGACAATCGTGGCATGTCTGAAAAAATGGAATTCAAAACAAGTTTTATACGCTCAACAATACAACAATAACTGATGGAGTACAAAAGAAGTAGGCGGAATTTTGAAAAAAATATATATTCGGAGGCAAGCAGCTGTTTAATATTTGCATATAAAACCCGTATATGGCAAAACTTCAAAAACATAAATTTTCAAATAAAAGTTCAATTGCCTTTAAAAATTCTGAAAGAGATTCTGGGAGACATTAATGGAACAACCCAATATGAGAGAAAAATGTGTTTATTTATAGGACATCTTGACCTCAAAGAAACCAAACAACCACAGAAACTAGAAAAAGCTGATAAGAGAGCTTACGTTGACCGGTCAAGAACAAGTATAAAATTCAAAAATAGCTGAAATGTTTTGAACTGTGGCACAGATAAAAATATTTACCGTCTTCACAGAATGGCCGAGAACGGCCAAAAATATTCTGTGGTTTGATATTGTATCCGGTGAATCATTTTATTGTTCATGACTCAATTTGGAAAAAAAAATTATTGATTTCAAAGAACGGCTGTTTAAATTCAAAAAACCAACTTCTGTTTTTTTTCTACCATGAAAAAAAAATTGAAGAGTACATCAAGCTGGTATGATTATTTGATCAAACTCATATTTGCTCTTCGTACTAAATTCTTTACTTCCAACATACACATTTCGTCCTGTTTTGTGTAGAGTTTAACAATAAATTACTCGATTTATAAAAAAACTTTCAATAGAATAAAATAAAACATTTCGAAAAAAGGACACCTGGA</canonical>
            <polymorphic>AATCCACTCGGGCAAGATGATCCCATTTTCAAAACACAAAGCCTTTCGTCAGTCCAAGCTATAATTTCGAAAATCTTCTTTGAAAAATCAAAATCGACTTACATTGACTAATCTGATTTATCATTCGATGAGGTGGCGGTGAGGAATATAGTGGAGCTCCTGATATAAGAGTCATACAGAAAAATGTGATGATTACAGTATACAAAAAATCCGACAATCGTGGCATGTCTGAAAAAATGGAATTCAAAACAAGTTTTATACGCTCAACAATACAACAATAACTGATGGAGTACAAAAGAAGTAGGCGGAATTTTGAAAAAAATATATATTCGGAGGCAAGCAGCTGTTTAATATTTGCATATAAAACCCGTATATGGCAAAACTTCAAAAACATAAATTTTCAAATAAAAGTTCAATTGCCTTTAAAAATTCTGAAAGAGATTCTGGGAGACATTAATGGAACAACCCAATATGAGAGAAAAATGTGTTTATTTATAGGRCATCTTGACCTCAAAGAAACCAAACAACCACAGAAACTAGAAAAAGCTGATAAGAGAGCTTACGTTGACCGGTCAAGAACAAGTATAAAATTCAAAAATAGCTGAAATGTTTTGAACTGTGGCACAGATAAAAATATTTACCGTCTTCACAGAATGGCCGAGAACGGCCAAAAATATTCTGTGGTTTGATATTGTATCCGGTGAATCATTTTATTGTTCATGACTCAATTTGGAAAAAAAAATTATTGATTTCAAAGAACGGCTGTTTAAATTCAAAAAACCAACTTCTGTTTTTTTTCTACCATGAAAAAAAAATTGAAGAGTACATCAAGCTGGTATGATTATTTGATCAAACTCATATTTGCTCTTCGTACTAAATTCTTTACTTCCAACATACACATTTCGTCCTGTTTTGTGTAGAGTTTAACAATAAATTACTCGATTTATAAAAAAACTTTCAATAGAATAAAATAAAACATTTCGAAAAAAGGACACCTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATATGGCAAAACTTCAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CAGTTCAAAACATTTCAGCTATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTATATGGCAAAACTTCAAAAACATAAATTTTCAAATAAAAGTTCAATTGCCTTTAAAAATTCTGAAAGAGATTCTGGGAGACATTAATGGAACAACCCAATATGAGAGAAAAATGTGTTTATTTATAGGACATCTTGACCTCAAAGAAACCAAACAACCACAGAAACTAGAAAAAGCTGATAAGAGAGCTTACGTTGACCGGTCAAGAACAAGTATAAAATTCAAAAATAGCTGAAATGTTTTGAACTG</canonical_amplicon>
		<polymorphic_amplicon>GTATATGGCAAAACTTCAAAAACATAAATTTTCAAATAAAAGTTCAATTGCCTTTAAAAATTCTGAAAGAGATTCTGGGAGACATTAATGGAACAACCCAATATGAGAGAAAAATGTGTTTATTTATAGGRCATCTTGACCTCAAAGAAACCAAACAACCACAGAAACTAGAAAAAGCTGATAAGAGAGCTTACGTTGACCGGTCAAGAACAAGTATAAAATTCAAAAATAGCTGAAATGTTTTGAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24929</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1566672</contig_pos>
        <strand>+</strand>
        <context>aatttatctg[A/G]aggctgcaat</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGACGTCCACTTTGAAACTATTGAATTTCATCTGGCCTAAAATTTATCTG</left_flank>
        <right_flank>AGGCTGCAATTTGTAACCAAACCTTCTGGGTCTCTTTGAGCATGGTAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATGTAAATAGTGGAAAATTTACCTGATTCGCTAAAGCAGCTGGTTTTTTATACCGCTCCACATTAATGAATCATTAATCCGTTTGATTAGTTTGGAAAGGTCGAAAAGTCAAGAACTCAAGGTTTTTCTGAGGTATGCTCATTAAGTTAATATATGACTGGTTCTGTGATATAAGTGGTCCATCTTAATCTTGGTTGCTCTTTAATCTAATAGTTTGGCTTCTTGCAGGAACTACGAAAAGCAACTTACTAATGTAACGTTATTGATATTTTCTAATATTTTCAAAAAATGAAAAGCATGCACATCCACCCGAAAAGCTGAAACAGTGGCGCCCCAGCGAACTGTAGATATCACTACCTACTGAACATATCACACTTTTTGGCAGTGTCAAACACGCAACGACGAGCGAAACAAAGCGAGCGTTGATTTTCAATACTCAGATCATTTTGACGTCCACTTTGAAACTATTGAATTTCATCTGGCCTAAAATTTATCTGTAGGCTGCAATTTGTAACCAAACCTTCTGGGTCTCTTTGAGCATGGTAATTGGAAACCAACTCGAAAAATTATGAATTAGAGTTTTTTTATTTATCAATAATCATTTATCAATATTGGCTCCCACTAATTTTCAAATTCTCACTAACCTCTACTTCACTTTTTGGAACGATCAAATTCTTTTTTTGCTCCAGCTCCAACCGCTCACTCGACATCCTAGGGTTTGTAGTCGACATGTTTGAGATTCCTGAAATGTTTCGATTTCGATTCGAGAAAACACGGCATATTAAAAACAAGAGAGACGGTGAGTCGCCGGAAGAGAAGAGTGCATGCGGGGGCAAACCACAACAGAATTGAAATAACAGTCAAGGAAAGAGCGAATGGGAAGCGGGGCGGAGTCTTCTTCTTACCTAGCTAGAGAACAAAATCTCCGAGAGGCGCAGCATGTGAGAAGAGCTTCGCAGAGTCAGTGTTTGAATTGTAGCTGTAAAATCTGATTTTTG</canonical>
            <polymorphic>ACATGTAAATAGTGGAAAATTTACCTGATTCGCTAAAGCAGCTGGTTTTTTATACCGCTCCACATTAATGAATCATTAATCCGTTTGATTAGTTTGGAAAGGTCGAAAAGTCAAGAACTCAAGGTTTTTCTGAGGTATGCTCATTAAGTTAATATATGACTGGTTCTGTGATATAAGTGGTCCATCTTAATCTTGGTTGCTCTTTAATCTAATAGTTTGGCTTCTTGCAGGAACTACGAAAAGCAACTTACTAATGTAACGTTATTGATATTTTCTAATATTTTCAAAAAATGAAAAGCATGCACATCCACCCGAAAAGCTGAAACAGTGGCGCCCCAGCGAACTGTAGATATCACTACCTACTGAACATATCACACTTTTTGGCAGTGTCAAACACGCAACGACGAGCGAAACAAAGCGAGCGTTGATTTTCAATACTCAGATCATTTTGACGTCCACTTTGAAACTATTGAATTTCATCTGGCCTAAAATTTATCTGRAGGCTGCAATTTGTAACCAAACCTTCTGGGTCTCTTTGAGCATGGTAATTGGAAACCAACTCGAAAAATTATGAATTAGAGTTTTTTTATTTATCAATAATCATTTATCAATATTGGCTCCCACTAATTTTCAAATTCTCACTAACCTCTACTTCACTTTTTGGAACGATCAAATTCTTTTTTTGCTCCAGCTCCAACCGCTCACTCGACATCCTAGGGTTTGTAGTCGACATGTTTGAGATTCCTGAAATGTTTCGATTTCGATTCGAGAAAACACGGCATATTAAAAACAAGAGAGACGGTGAGTCGCCGGAAGAGAAGAGTGCATGCGGGGGCAAACCACAACAGAATTGAAATAACAGTCAAGGAAAGAGCGAATGGGAAGCGGGGCGGAGTCTTCTTCTTACCTAGCTAGAGAACAAAATCTCCGAGAGGCGCAGCATGTGAGAAGAGCTTCGCAGAGTCAGTGTTTGAATTGTAGCTGTAAAATCTGATTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 344 153</canonical_bands>
                <polymorphic_bands>656 344</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAGCAACTTACTAATGTAACG</pcr_primer_p1>
		<pcr_primer_p2>CCAATTACCATGCTCAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>315</pcr_amplicon_size>
		<canonical_amplicon>GAAAAGCAACTTACTAATGTAACGTTATTGATATTTTCTAATATTTTCAAAAAATGAAAAGCATGCACATCCACCCGAAAAGCTGAAACAGTGGCGCCCCAGCGAACTGTAGATATCACTACCTACTGAACATATCACACTTTTTGGCAGTGTCAAACACGCAACGACGAGCGAAACAAAGCGAGCGTTGATTTTCAATACTCAGATCATTTTGACGTCCACTTTGAAACTATTGAATTTCATCTGGCCTAAAATTTATCTGTAGGCTGCAATTTGTAACCAAACCTTCTGGGTCTCTTTGAGCATGGTAATTGG</canonical_amplicon>
		<polymorphic_amplicon>GAAAAGCAACTTACTAATGTAACGTTATTGATATTTTCTAATATTTTCAAAAAATGAAAAGCATGCACATCCACCCGAAAAGCTGAAACAGTGGCGCCCCAGCGAACTGTAGATATCACTACCTACTGAACATATCACACTTTTTGGCAGTGTCAAACACGCAACGACGAGCGAAACAAAGCGAGCGTTGATTTTCAATACTCAGATCATTTTGACGTCCACTTTGAAACTATTGAATTTCATCTGGCCTAAAATTTATCTGRAGGCTGCAATTTGTAACCAAACCTTCTGGGTCTCTTTGAGCATGGTAATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24930</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1577640</contig_pos>
        <strand>+</strand>
        <context>AATCTTTGGC[A/T]CTTGGTCTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAATCCTAACGGAAATCATTCACAAATCATGTTTCTCATCAATCTTTGGC</left_flank>
        <right_flank>CTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATATACTACTACTACGGAAAGATCTGCACAGCCGACAAACTTTGATTGGATTATAAATCTTTATTTCATATAGTTATGTAATTTTTTGATGCCTCAAGCTTCTTGATGTTTTGAAAGAAAACATTGCAATAATTCTGGAATAAAGATAAAACTAAAATTTATGATATTTTTTGTTTATTGCTCGAACTCAAGTTTCGTATTTAATTTTTCTTCAACAAAATTTTTTTGAAAAAAGTTGTTTTCCACTTTGAAAATACTTTAAAAATACAAAACGTTTGAGTTAACTATTGCAGCATAAAATACGAATGTCGAGCATCTTGCTCCGTTGCAGCACTTGACACGTTATCTCATAATTTCCTTTTTATCATTGTATTATTTTAGCTTTTTTCTCTGAAAATCCTGAAAAGGTAAATCTGTGTATGATTATAGCGGTCCGAGAAGAAAATAGCAATCCTAACGGAAATCATTCACAAATCATGTTTCTCATCAATCTTTGGCACTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTTCATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAACCTTGTTTGCTAGGTAAAATACCAGCTTTTTTACATGGCTGAATAACCCCATAAAATGAATTTAGATCAAGAACTCCCCCAAACTAGCGCTGAGAAAAAAGAATACAAGGAAAACTGTGCGGTGTGCTTTTGCAACTTTACCGAAATCACGTCAGAAAAGGGGGCGTGGCATAGTTATTATGAAACAATTCGATTGTTTACGCGTTCATCTGCGTGATTTTTTTTGATTTGACAATAGTGAGTCATTCATGGAAGCGAATAATAATTTTCTTGAGTCGTCATTCCTAAACACTCAGTGTCAGCTTTCATTCCGGACTGTTATATTCTCCTCCGTCTGTTTTTTCTTCTCGAACCG</canonical>
            <polymorphic>TATATACTACTACTACGGAAAGATCTGCACAGCCGACAAACTTTGATTGGATTATAAATCTTTATTTCATATAGTTATGTAATTTTTTGATGCCTCAAGCTTCTTGATGTTTTGAAAGAAAACATTGCAATAATTCTGGAATAAAGATAAAACTAAAATTTATGATATTTTTTGTTTATTGCTCGAACTCAAGTTTCGTATTTAATTTTTCTTCAACAAAATTTTTTTGAAAAAAGTTGTTTTCCACTTTGAAAATACTTTAAAAATACAAAACGTTTGAGTTAACTATTGCAGCATAAAATACGAATGTCGAGCATCTTGCTCCGTTGCAGCACTTGACACGTTATCTCATAATTTCCTTTTTATCATTGTATTATTTTAGCTTTTTTCTCTGAAAATCCTGAAAAGGTAAATCTGTGTATGATTATAGCGGTCCGAGAAGAAAATAGCAATCCTAACGGAAATCATTCACAAATCATGTTTCTCATCAATCTTTGGCWCTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTTCATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAACCTTGTTTGCTAGGTAAAATACCAGCTTTTTTACATGGCTGAATAACCCCATAAAATGAATTTAGATCAAGAACTCCCCCAAACTAGCGCTGAGAAAAAAGAATACAAGGAAAACTGTGCGGTGTGCTTTTGCAACTTTACCGAAATCACGTCAGAAAAGGGGGCGTGGCATAGTTATTATGAAACAATTCGATTGTTTACGCGTTCATCTGCGTGATTTTTTTTGATTTGACAATAGTGAGTCATTCATGGAAGCGAATAATAATTTTCTTGAGTCGTCATTCCTAAACACTCAGTGTCAGCTTTCATTCCGGACTGTTATATTCTCCTCCGTCTGTTTTTTCTTCTCGAACCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>217 189 88 78 57 52 51 48 38 29 29 24 23 19 19 18 7 7 5 2</canonical_bands>
                <polymorphic_bands>217 189 88 78 57 52 51 48 47 38 29 24 23 19 19 7 7 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAAAATCCTGAAAAGGTAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTAGCTGAATAATCCCATTAACA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAATCCTGAAAAGGTAAATCTGTGTATGATTATAGCGGTCCGAGAAGAAAATAGCAATCCTAACGGAAATCATTCACAAATCATGTTTCTCATCAATCTTTGGCACTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTTCATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAG</canonical_amplicon>
		<polymorphic_amplicon>CTGAAAATCCTGAAAAGGTAAATCTGTGTATGATTATAGCGGTCCGAGAAGAAAATAGCAATCCTAACGGAAATCATTCACAAATCATGTTTCTCATCAATCTTTGGCWCTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTTCATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24931</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1577705</contig_pos>
        <strand>+</strand>
        <context>CACATTTTTT[C/T]ATTCCATACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTT</left_flank>
        <right_flank>ATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGATTTTCATTCTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCATATAGTTATGTAATTTTTTGATGCCTCAAGCTTCTTGATGTTTTGAAAGAAAACATTGCAATAATTCTGGAATAAAGATAAAACTAAAATTTATGATATTTTTTGTTTATTGCTCGAACTCAAGTTTCGTATTTAATTTTTCTTCAACAAAATTTTTTTGAAAAAAGTTGTTTTCCACTTTGAAAATACTTTAAAAATACAAAACGTTTGAGTTAACTATTGCAGCATAAAATACGAATGTCGAGCATCTTGCTCCGTTGCAGCACTTGACACGTTATCTCATAATTTCCTTTTTATCATTGTATTATTTTAGCTTTTTTCTCTGAAAATCCTGAAAAGGTAAATCTGTGTATGATTATAGCGGTCCGAGAAGAAAATAGCAATCCTAACGGAAATCATTCACAAATCATGTTTCTCATCAATCTTTGGCACTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTTCATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAACCTTGTTTGCTAGGTAAAATACCAGCTTTTTTACATGGCTGAATAACCCCATAAAATGAATTTAGATCAAGAACTCCCCCAAACTAGCGCTGAGAAAAAAGAATACAAGGAAAACTGTGCGGTGTGCTTTTGCAACTTTACCGAAATCACGTCAGAAAAGGGGGCGTGGCATAGTTATTATGAAACAATTCGATTGTTTACGCGTTCATCTGCGTGATTTTTTTTGATTTGACAATAGTGAGTCATTCATGGAAGCGAATAATAATTTTCTTGAGTCGTCATTCCTAAACACTCAGTGTCAGCTTTCATTCCGGACTGTTATATTCTCCTCCGTCTGTTTTTTCTTCTCGAACCGTTATTTTCATCTTGGTCCGCTTTGATCATGTAGAGCCAACCAAAGTATAAAGTCTCAATTTTTCC</canonical>
            <polymorphic>TTCATATAGTTATGTAATTTTTTGATGCCTCAAGCTTCTTGATGTTTTGAAAGAAAACATTGCAATAATTCTGGAATAAAGATAAAACTAAAATTTATGATATTTTTTGTTTATTGCTCGAACTCAAGTTTCGTATTTAATTTTTCTTCAACAAAATTTTTTTGAAAAAAGTTGTTTTCCACTTTGAAAATACTTTAAAAATACAAAACGTTTGAGTTAACTATTGCAGCATAAAATACGAATGTCGAGCATCTTGCTCCGTTGCAGCACTTGACACGTTATCTCATAATTTCCTTTTTATCATTGTATTATTTTAGCTTTTTTCTCTGAAAATCCTGAAAAGGTAAATCTGTGTATGATTATAGCGGTCCGAGAAGAAAATAGCAATCCTAACGGAAATCATTCACAAATCATGTTTCTCATCAATCTTTGGCACTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTTYATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAACCTTGTTTGCTAGGTAAAATACCAGCTTTTTTACATGGCTGAATAACCCCATAAAATGAATTTAGATCAAGAACTCCCCCAAACTAGCGCTGAGAAAAAAGAATACAAGGAAAACTGTGCGGTGTGCTTTTGCAACTTTACCGAAATCACGTCAGAAAAGGGGGCGTGGCATAGTTATTATGAAACAATTCGATTGTTTACGCGTTCATCTGCGTGATTTTTTTTGATTTGACAATAGTGAGTCATTCATGGAAGCGAATAATAATTTTCTTGAGTCGTCATTCCTAAACACTCAGTGTCAGCTTTCATTCCGGACTGTTATATTCTCCTCCGTCTGTTTTTTCTTCTCGAACCGTTATTTTCATCTTGGTCCGCTTTGATCATGTAGAGCCAACCAAAGTATAAAGTCTCAATTTTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCATGTTTCTCATCAATCTTT</pcr_primer_p1>
		<pcr_primer_p2>GGGAGTTCTTGATCTAAATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCATGTTTCTCATCAATCTTTGGCACTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTTCATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAACCTTGTTTGCTAGGTAAAATACCAGCTTTTTTACATGGCTGAATAACCCCATAAAATGAATTTAGATCAAGAACTCCC</canonical_amplicon>
		<polymorphic_amplicon>AATCATGTTTCTCATCAATCTTTGGCACTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTTYATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAACCTTGTTTGCTAGGTAAAATACCAGCTTTTTTACATGGCTGAATAACCCCATAAAATGAATTTAGATCAAGAACTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24932</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1577745</contig_pos>
        <strand>+</strand>
        <context>AAACTCCCGA[C/T]TTTCATTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACATTTTTTCATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGA</left_flank>
        <right_flank>TTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAACCTTGTTTGC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGTTTTGAAAGAAAACATTGCAATAATTCTGGAATAAAGATAAAACTAAAATTTATGATATTTTTTGTTTATTGCTCGAACTCAAGTTTCGTATTTAATTTTTCTTCAACAAAATTTTTTTGAAAAAAGTTGTTTTCCACTTTGAAAATACTTTAAAAATACAAAACGTTTGAGTTAACTATTGCAGCATAAAATACGAATGTCGAGCATCTTGCTCCGTTGCAGCACTTGACACGTTATCTCATAATTTCCTTTTTATCATTGTATTATTTTAGCTTTTTTCTCTGAAAATCCTGAAAAGGTAAATCTGTGTATGATTATAGCGGTCCGAGAAGAAAATAGCAATCCTAACGGAAATCATTCACAAATCATGTTTCTCATCAATCTTTGGCACTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTTCATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAACCTTGTTTGCTAGGTAAAATACCAGCTTTTTTACATGGCTGAATAACCCCATAAAATGAATTTAGATCAAGAACTCCCCCAAACTAGCGCTGAGAAAAAAGAATACAAGGAAAACTGTGCGGTGTGCTTTTGCAACTTTACCGAAATCACGTCAGAAAAGGGGGCGTGGCATAGTTATTATGAAACAATTCGATTGTTTACGCGTTCATCTGCGTGATTTTTTTTGATTTGACAATAGTGAGTCATTCATGGAAGCGAATAATAATTTTCTTGAGTCGTCATTCCTAAACACTCAGTGTCAGCTTTCATTCCGGACTGTTATATTCTCCTCCGTCTGTTTTTTCTTCTCGAACCGTTATTTTCATCTTGGTCCGCTTTGATCATGTAGAGCCAACCAAAGTATAAAGTCTCAATTTTTCCACAATTTCAAAATATACTGGATCAAATTACACTGTTAGCA</canonical>
            <polymorphic>GATGTTTTGAAAGAAAACATTGCAATAATTCTGGAATAAAGATAAAACTAAAATTTATGATATTTTTTGTTTATTGCTCGAACTCAAGTTTCGTATTTAATTTTTCTTCAACAAAATTTTTTTGAAAAAAGTTGTTTTCCACTTTGAAAATACTTTAAAAATACAAAACGTTTGAGTTAACTATTGCAGCATAAAATACGAATGTCGAGCATCTTGCTCCGTTGCAGCACTTGACACGTTATCTCATAATTTCCTTTTTATCATTGTATTATTTTAGCTTTTTTCTCTGAAAATCCTGAAAAGGTAAATCTGTGTATGATTATAGCGGTCCGAGAAGAAAATAGCAATCCTAACGGAAATCATTCACAAATCATGTTTCTCATCAATCTTTGGCACTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTTCATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGAYTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAACCTTGTTTGCTAGGTAAAATACCAGCTTTTTTACATGGCTGAATAACCCCATAAAATGAATTTAGATCAAGAACTCCCCCAAACTAGCGCTGAGAAAAAAGAATACAAGGAAAACTGTGCGGTGTGCTTTTGCAACTTTACCGAAATCACGTCAGAAAAGGGGGCGTGGCATAGTTATTATGAAACAATTCGATTGTTTACGCGTTCATCTGCGTGATTTTTTTTGATTTGACAATAGTGAGTCATTCATGGAAGCGAATAATAATTTTCTTGAGTCGTCATTCCTAAACACTCAGTGTCAGCTTTCATTCCGGACTGTTATATTCTCCTCCGTCTGTTTTTTCTTCTCGAACCGTTATTTTCATCTTGGTCCGCTTTGATCATGTAGAGCCAACCAAAGTATAAAGTCTCAATTTTTCCACAATTTCAAAATATACTGGATCAAATTACACTGTTAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCATGTTTCTCATCAATCTTT</pcr_primer_p1>
		<pcr_primer_p2>GGGAGTTCTTGATCTAAATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCATGTTTCTCATCAATCTTTGGCACTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTTCATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAACCTTGTTTGCTAGGTAAAATACCAGCTTTTTTACATGGCTGAATAACCCCATAAAATGAATTTAGATCAAGAACTCCC</canonical_amplicon>
		<polymorphic_amplicon>AATCATGTTTCTCATCAATCTTTGGCACTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTTCATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGAYTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAACCTTGTTTGCTAGGTAAAATACCAGCTTTTTTACATGGCTGAATAACCCCATAAAATGAATTTAGATCAAGAACTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24933</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1577786</contig_pos>
        <strand>+</strand>
        <context>AGGTAAAAAA[C/T]YTTGYTTGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACTCCCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAA</left_flank>
        <right_flank>CTTGTTTGCTAGGTAAAATACCAGCTTTTTTACATGGCTGAATAACCCCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAAACTAAAATTTATGATATTTTTTGTTTATTGCTCGAACTCAAGTTTCGTATTTAATTTTTCTTCAACAAAATTTTTTTGAAAAAAGTTGTTTTCCACTTTGAAAATACTTTAAAAATACAAAACGTTTGAGTTAACTATTGCAGCATAAAATACGAATGTCGAGCATCTTGCTCCGTTGCAGCACTTGACACGTTATCTCATAATTTCCTTTTTATCATTGTATTATTTTAGCTTTTTTCTCTGAAAATCCTGAAAAGGTAAATCTGTGTATGATTATAGCGGTCCGAGAAGAAAATAGCAATCCTAACGGAAATCATTCACAAATCATGTTTCTCATCAATCTTTGGCACTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTTCATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAACCTTGTTTGCTAGGTAAAATACCAGCTTTTTTACATGGCTGAATAACCCCATAAAATGAATTTAGATCAAGAACTCCCCCAAACTAGCGCTGAGAAAAAAGAATACAAGGAAAACTGTGCGGTGTGCTTTTGCAACTTTACCGAAATCACGTCAGAAAAGGGGGCGTGGCATAGTTATTATGAAACAATTCGATTGTTTACGCGTTCATCTGCGTGATTTTTTTTGATTTGACAATAGTGAGTCATTCATGGAAGCGAATAATAATTTTCTTGAGTCGTCATTCCTAAACACTCAGTGTCAGCTTTCATTCCGGACTGTTATATTCTCCTCCGTCTGTTTTTTCTTCTCGAACCGTTATTTTCATCTTGGTCCGCTTTGATCATGTAGAGCCAACCAAAGTATAAAGTCTCAATTTTTCCACAATTTCAAAATATACTGGATCAAATTACACTGTTAGCATTGTGTATGGTATCCTTTTTGTATGGATTTCAGCAGTAGAT</canonical>
            <polymorphic>ATAAAACTAAAATTTATGATATTTTTTGTTTATTGCTCGAACTCAAGTTTCGTATTTAATTTTTCTTCAACAAAATTTTTTTGAAAAAAGTTGTTTTCCACTTTGAAAATACTTTAAAAATACAAAACGTTTGAGTTAACTATTGCAGCATAAAATACGAATGTCGAGCATCTTGCTCCGTTGCAGCACTTGACACGTTATCTCATAATTTCCTTTTTATCATTGTATTATTTTAGCTTTTTTCTCTGAAAATCCTGAAAAGGTAAATCTGTGTATGATTATAGCGGTCCGAGAAGAAAATAGCAATCCTAACGGAAATCATTCACAAATCATGTTTCTCATCAATCTTTGGCACTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTTCATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAAYCTTGTTTGCTAGGTAAAATACCAGCTTTTTTACATGGCTGAATAACCCCATAAAATGAATTTAGATCAAGAACTCCCCCAAACTAGCGCTGAGAAAAAAGAATACAAGGAAAACTGTGCGGTGTGCTTTTGCAACTTTACCGAAATCACGTCAGAAAAGGGGGCGTGGCATAGTTATTATGAAACAATTCGATTGTTTACGCGTTCATCTGCGTGATTTTTTTTGATTTGACAATAGTGAGTCATTCATGGAAGCGAATAATAATTTTCTTGAGTCGTCATTCCTAAACACTCAGTGTCAGCTTTCATTCCGGACTGTTATATTCTCCTCCGTCTGTTTTTTCTTCTCGAACCGTTATTTTCATCTTGGTCCGCTTTGATCATGTAGAGCCAACCAAAGTATAAAGTCTCAATTTTTCCACAATTTCAAAATATACTGGATCAAATTACACTGTTAGCATTGTGTATGGTATCCTTTTTGTATGGATTTCAGCAGTAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCATGTTTCTCATCAATCTTT</pcr_primer_p1>
		<pcr_primer_p2>GGGAGTTCTTGATCTAAATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCATGTTTCTCATCAATCTTTGGCACTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTTCATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAACCTTGTTTGCTAGGTAAAATACCAGCTTTTTTACATGGCTGAATAACCCCATAAAATGAATTTAGATCAAGAACTCCC</canonical_amplicon>
		<polymorphic_amplicon>AATCATGTTTCTCATCAATCTTTGGCACTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTTCATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAAYCTTGTTTGCTAGGTAAAATACCAGCTTTTTTACATGGCTGAATAACCCCATAAAATGAATTTAGATCAAGAACTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24934</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1577787</contig_pos>
        <strand>+</strand>
        <context>GGTAAAAAAY[C/T]TTGYTTGCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTCCCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAAC</left_flank>
        <right_flank>TTGTTTGCTAGGTAAAATACCAGCTTTTTTACATGGCTGAATAACCCCAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAACTAAAATTTATGATATTTTTTGTTTATTGCTCGAACTCAAGTTTCGTATTTAATTTTTCTTCAACAAAATTTTTTTGAAAAAAGTTGTTTTCCACTTTGAAAATACTTTAAAAATACAAAACGTTTGAGTTAACTATTGCAGCATAAAATACGAATGTCGAGCATCTTGCTCCGTTGCAGCACTTGACACGTTATCTCATAATTTCCTTTTTATCATTGTATTATTTTAGCTTTTTTCTCTGAAAATCCTGAAAAGGTAAATCTGTGTATGATTATAGCGGTCCGAGAAGAAAATAGCAATCCTAACGGAAATCATTCACAAATCATGTTTCTCATCAATCTTTGGCACTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTTCATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAACCTTGTTTGCTAGGTAAAATACCAGCTTTTTTACATGGCTGAATAACCCCATAAAATGAATTTAGATCAAGAACTCCCCCAAACTAGCGCTGAGAAAAAAGAATACAAGGAAAACTGTGCGGTGTGCTTTTGCAACTTTACCGAAATCACGTCAGAAAAGGGGGCGTGGCATAGTTATTATGAAACAATTCGATTGTTTACGCGTTCATCTGCGTGATTTTTTTTGATTTGACAATAGTGAGTCATTCATGGAAGCGAATAATAATTTTCTTGAGTCGTCATTCCTAAACACTCAGTGTCAGCTTTCATTCCGGACTGTTATATTCTCCTCCGTCTGTTTTTTCTTCTCGAACCGTTATTTTCATCTTGGTCCGCTTTGATCATGTAGAGCCAACCAAAGTATAAAGTCTCAATTTTTCCACAATTTCAAAATATACTGGATCAAATTACACTGTTAGCATTGTGTATGGTATCCTTTTTGTATGGATTTCAGCAGTAGATC</canonical>
            <polymorphic>TAAAACTAAAATTTATGATATTTTTTGTTTATTGCTCGAACTCAAGTTTCGTATTTAATTTTTCTTCAACAAAATTTTTTTGAAAAAAGTTGTTTTCCACTTTGAAAATACTTTAAAAATACAAAACGTTTGAGTTAACTATTGCAGCATAAAATACGAATGTCGAGCATCTTGCTCCGTTGCAGCACTTGACACGTTATCTCATAATTTCCTTTTTATCATTGTATTATTTTAGCTTTTTTCTCTGAAAATCCTGAAAAGGTAAATCTGTGTATGATTATAGCGGTCCGAGAAGAAAATAGCAATCCTAACGGAAATCATTCACAAATCATGTTTCTCATCAATCTTTGGCACTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTTCATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAACYTTGTTTGCTAGGTAAAATACCAGCTTTTTTACATGGCTGAATAACCCCATAAAATGAATTTAGATCAAGAACTCCCCCAAACTAGCGCTGAGAAAAAAGAATACAAGGAAAACTGTGCGGTGTGCTTTTGCAACTTTACCGAAATCACGTCAGAAAAGGGGGCGTGGCATAGTTATTATGAAACAATTCGATTGTTTACGCGTTCATCTGCGTGATTTTTTTTGATTTGACAATAGTGAGTCATTCATGGAAGCGAATAATAATTTTCTTGAGTCGTCATTCCTAAACACTCAGTGTCAGCTTTCATTCCGGACTGTTATATTCTCCTCCGTCTGTTTTTTCTTCTCGAACCGTTATTTTCATCTTGGTCCGCTTTGATCATGTAGAGCCAACCAAAGTATAAAGTCTCAATTTTTCCACAATTTCAAAATATACTGGATCAAATTACACTGTTAGCATTGTGTATGGTATCCTTTTTGTATGGATTTCAGCAGTAGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCATGTTTCTCATCAATCTTT</pcr_primer_p1>
		<pcr_primer_p2>GGGAGTTCTTGATCTAAATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCATGTTTCTCATCAATCTTTGGCACTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTTCATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAACCTTGTTTGCTAGGTAAAATACCAGCTTTTTTACATGGCTGAATAACCCCATAAAATGAATTTAGATCAAGAACTCCC</canonical_amplicon>
		<polymorphic_amplicon>AATCATGTTTCTCATCAATCTTTGGCACTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTTCATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAACYTTGTTTGCTAGGTAAAATACCAGCTTTTTTACATGGCTGAATAACCCCATAAAATGAATTTAGATCAAGAACTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24935</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1577791</contig_pos>
        <strand>+</strand>
        <context>AAAAAYYTTG[C/T]TTGCTAGGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAACCTTG</left_flank>
        <right_flank>TTGCTAGGTAAAATACCAGCTTTTTTACATGGCTGAATAACCCCATAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTAAAATTTATGATATTTTTTGTTTATTGCTCGAACTCAAGTTTCGTATTTAATTTTTCTTCAACAAAATTTTTTTGAAAAAAGTTGTTTTCCACTTTGAAAATACTTTAAAAATACAAAACGTTTGAGTTAACTATTGCAGCATAAAATACGAATGTCGAGCATCTTGCTCCGTTGCAGCACTTGACACGTTATCTCATAATTTCCTTTTTATCATTGTATTATTTTAGCTTTTTTCTCTGAAAATCCTGAAAAGGTAAATCTGTGTATGATTATAGCGGTCCGAGAAGAAAATAGCAATCCTAACGGAAATCATTCACAAATCATGTTTCTCATCAATCTTTGGCACTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTTCATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAACCTTGTTTGCTAGGTAAAATACCAGCTTTTTTACATGGCTGAATAACCCCATAAAATGAATTTAGATCAAGAACTCCCCCAAACTAGCGCTGAGAAAAAAGAATACAAGGAAAACTGTGCGGTGTGCTTTTGCAACTTTACCGAAATCACGTCAGAAAAGGGGGCGTGGCATAGTTATTATGAAACAATTCGATTGTTTACGCGTTCATCTGCGTGATTTTTTTTGATTTGACAATAGTGAGTCATTCATGGAAGCGAATAATAATTTTCTTGAGTCGTCATTCCTAAACACTCAGTGTCAGCTTTCATTCCGGACTGTTATATTCTCCTCCGTCTGTTTTTTCTTCTCGAACCGTTATTTTCATCTTGGTCCGCTTTGATCATGTAGAGCCAACCAAAGTATAAAGTCTCAATTTTTCCACAATTTCAAAATATACTGGATCAAATTACACTGTTAGCATTGTGTATGGTATCCTTTTTGTATGGATTTCAGCAGTAGATCCAAA</canonical>
            <polymorphic>ACTAAAATTTATGATATTTTTTGTTTATTGCTCGAACTCAAGTTTCGTATTTAATTTTTCTTCAACAAAATTTTTTTGAAAAAAGTTGTTTTCCACTTTGAAAATACTTTAAAAATACAAAACGTTTGAGTTAACTATTGCAGCATAAAATACGAATGTCGAGCATCTTGCTCCGTTGCAGCACTTGACACGTTATCTCATAATTTCCTTTTTATCATTGTATTATTTTAGCTTTTTTCTCTGAAAATCCTGAAAAGGTAAATCTGTGTATGATTATAGCGGTCCGAGAAGAAAATAGCAATCCTAACGGAAATCATTCACAAATCATGTTTCTCATCAATCTTTGGCACTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTTCATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAACCTTGYTTGCTAGGTAAAATACCAGCTTTTTTACATGGCTGAATAACCCCATAAAATGAATTTAGATCAAGAACTCCCCCAAACTAGCGCTGAGAAAAAAGAATACAAGGAAAACTGTGCGGTGTGCTTTTGCAACTTTACCGAAATCACGTCAGAAAAGGGGGCGTGGCATAGTTATTATGAAACAATTCGATTGTTTACGCGTTCATCTGCGTGATTTTTTTTGATTTGACAATAGTGAGTCATTCATGGAAGCGAATAATAATTTTCTTGAGTCGTCATTCCTAAACACTCAGTGTCAGCTTTCATTCCGGACTGTTATATTCTCCTCCGTCTGTTTTTTCTTCTCGAACCGTTATTTTCATCTTGGTCCGCTTTGATCATGTAGAGCCAACCAAAGTATAAAGTCTCAATTTTTCCACAATTTCAAAATATACTGGATCAAATTACACTGTTAGCATTGTGTATGGTATCCTTTTTGTATGGATTTCAGCAGTAGATCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCATGTTTCTCATCAATCTTT</pcr_primer_p1>
		<pcr_primer_p2>GGGAGTTCTTGATCTAAATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCATGTTTCTCATCAATCTTTGGCACTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTTCATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAACCTTGTTTGCTAGGTAAAATACCAGCTTTTTTACATGGCTGAATAACCCCATAAAATGAATTTAGATCAAGAACTCCC</canonical_amplicon>
		<polymorphic_amplicon>AATCATGTTTCTCATCAATCTTTGGCACTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTTCATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAACCTTGYTTGCTAGGTAAAATACCAGCTTTTTTACATGGCTGAATAACCCCATAAAATGAATTTAGATCAAGAACTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24936</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1577809</contig_pos>
        <strand>+</strand>
        <context>GTAAAATACC[A/T]GCTTTTTTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATGGGATTATTCAGCTAGGTAAAAAACCTTGTTTGCTAGGTAAAATACC</left_flank>
        <right_flank>GCTTTTTTACATGGCTGAATAACCCCATAAAATGAATTTAGATCAAGAAC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGTTTATTGCTCGAACTCAAGTTTCGTATTTAATTTTTCTTCAACAAAATTTTTTTGAAAAAAGTTGTTTTCCACTTTGAAAATACTTTAAAAATACAAAACGTTTGAGTTAACTATTGCAGCATAAAATACGAATGTCGAGCATCTTGCTCCGTTGCAGCACTTGACACGTTATCTCATAATTTCCTTTTTATCATTGTATTATTTTAGCTTTTTTCTCTGAAAATCCTGAAAAGGTAAATCTGTGTATGATTATAGCGGTCCGAGAAGAAAATAGCAATCCTAACGGAAATCATTCACAAATCATGTTTCTCATCAATCTTTGGCACTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTTCATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAACCTTGTTTGCTAGGTAAAATACCAGCTTTTTTACATGGCTGAATAACCCCATAAAATGAATTTAGATCAAGAACTCCCCCAAACTAGCGCTGAGAAAAAAGAATACAAGGAAAACTGTGCGGTGTGCTTTTGCAACTTTACCGAAATCACGTCAGAAAAGGGGGCGTGGCATAGTTATTATGAAACAATTCGATTGTTTACGCGTTCATCTGCGTGATTTTTTTTGATTTGACAATAGTGAGTCATTCATGGAAGCGAATAATAATTTTCTTGAGTCGTCATTCCTAAACACTCAGTGTCAGCTTTCATTCCGGACTGTTATATTCTCCTCCGTCTGTTTTTTCTTCTCGAACCGTTATTTTCATCTTGGTCCGCTTTGATCATGTAGAGCCAACCAAAGTATAAAGTCTCAATTTTTCCACAATTTCAAAATATACTGGATCAAATTACACTGTTAGCATTGTGTATGGTATCCTTTTTGTATGGATTTCAGCAGTAGATCCAAAAAATAGATCCCTTTTATG</canonical>
            <polymorphic>TTTTGTTTATTGCTCGAACTCAAGTTTCGTATTTAATTTTTCTTCAACAAAATTTTTTTGAAAAAAGTTGTTTTCCACTTTGAAAATACTTTAAAAATACAAAACGTTTGAGTTAACTATTGCAGCATAAAATACGAATGTCGAGCATCTTGCTCCGTTGCAGCACTTGACACGTTATCTCATAATTTCCTTTTTATCATTGTATTATTTTAGCTTTTTTCTCTGAAAATCCTGAAAAGGTAAATCTGTGTATGATTATAGCGGTCCGAGAAGAAAATAGCAATCCTAACGGAAATCATTCACAAATCATGTTTCTCATCAATCTTTGGCACTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTTCATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAACCTTGTTTGCTAGGTAAAATACCWGCTTTTTTACATGGCTGAATAACCCCATAAAATGAATTTAGATCAAGAACTCCCCCAAACTAGCGCTGAGAAAAAAGAATACAAGGAAAACTGTGCGGTGTGCTTTTGCAACTTTACCGAAATCACGTCAGAAAAGGGGGCGTGGCATAGTTATTATGAAACAATTCGATTGTTTACGCGTTCATCTGCGTGATTTTTTTTGATTTGACAATAGTGAGTCATTCATGGAAGCGAATAATAATTTTCTTGAGTCGTCATTCCTAAACACTCAGTGTCAGCTTTCATTCCGGACTGTTATATTCTCCTCCGTCTGTTTTTTCTTCTCGAACCGTTATTTTCATCTTGGTCCGCTTTGATCATGTAGAGCCAACCAAAGTATAAAGTCTCAATTTTTCCACAATTTCAAAATATACTGGATCAAATTACACTGTTAGCATTGTGTATGGTATCCTTTTTGTATGGATTTCAGCAGTAGATCCAAAAAATAGATCCCTTTTATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>277 251 222 213 37</canonical_bands>
                <polymorphic_bands>314 251 222 213</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>264 251 213 134 88 37 13</canonical_bands>
                <polymorphic_bands>264 251 213 134 88 50</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCATGTTTCTCATCAATCTTT</pcr_primer_p1>
		<pcr_primer_p2>GGGAGTTCTTGATCTAAATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCATGTTTCTCATCAATCTTTGGCACTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTTCATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAACCTTGTTTGCTAGGTAAAATACCAGCTTTTTTACATGGCTGAATAACCCCATAAAATGAATTTAGATCAAGAACTCCC</canonical_amplicon>
		<polymorphic_amplicon>AATCATGTTTCTCATCAATCTTTGGCACTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTTCATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAACCTTGTTTGCTAGGTAAAATACCWGCTTTTTTACATGGCTGAATAACCCCATAAAATGAATTTAGATCAAGAACTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24937</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1577908</contig_pos>
        <strand>+</strand>
        <context>AACTGTGCGG[C/T]GTGCTTTTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTCCCCCAAACTAGCGCTGAGAAAAAAGAATACAAGGAAAACTGTGCGG</left_flank>
        <right_flank>GTGCTTTTGCAACTTTACCGAAATCACGTCAGAAAAGGGGGCGTGGCATA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAACGTTTGAGTTAACTATTGCAGCATAAAATACGAATGTCGAGCATCTTGCTCCGTTGCAGCACTTGACACGTTATCTCATAATTTCCTTTTTATCATTGTATTATTTTAGCTTTTTTCTCTGAAAATCCTGAAAAGGTAAATCTGTGTATGATTATAGCGGTCCGAGAAGAAAATAGCAATCCTAACGGAAATCATTCACAAATCATGTTTCTCATCAATCTTTGGCACTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTTCATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAACCTTGTTTGCTAGGTAAAATACCAGCTTTTTTACATGGCTGAATAACCCCATAAAATGAATTTAGATCAAGAACTCCCCCAAACTAGCGCTGAGAAAAAAGAATACAAGGAAAACTGTGCGGTGTGCTTTTGCAACTTTACCGAAATCACGTCAGAAAAGGGGGCGTGGCATAGTTATTATGAAACAATTCGATTGTTTACGCGTTCATCTGCGTGATTTTTTTTGATTTGACAATAGTGAGTCATTCATGGAAGCGAATAATAATTTTCTTGAGTCGTCATTCCTAAACACTCAGTGTCAGCTTTCATTCCGGACTGTTATATTCTCCTCCGTCTGTTTTTTCTTCTCGAACCGTTATTTTCATCTTGGTCCGCTTTGATCATGTAGAGCCAACCAAAGTATAAAGTCTCAATTTTTCCACAATTTCAAAATATACTGGATCAAATTACACTGTTAGCATTGTGTATGGTATCCTTTTTGTATGGATTTCAGCAGTAGATCCAAAAAATAGATCCCTTTTATGTTTCATACAATTCGATATTTTGAGAATAATTGAAAGATACTGTAAATTTTTTCAGGACTTTAATGTAGACTTTTTTCTAAGAAAACTCAAAAAAAAATA</canonical>
            <polymorphic>CAAAACGTTTGAGTTAACTATTGCAGCATAAAATACGAATGTCGAGCATCTTGCTCCGTTGCAGCACTTGACACGTTATCTCATAATTTCCTTTTTATCATTGTATTATTTTAGCTTTTTTCTCTGAAAATCCTGAAAAGGTAAATCTGTGTATGATTATAGCGGTCCGAGAAGAAAATAGCAATCCTAACGGAAATCATTCACAAATCATGTTTCTCATCAATCTTTGGCACTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTTCATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAACCTTGTTTGCTAGGTAAAATACCAGCTTTTTTACATGGCTGAATAACCCCATAAAATGAATTTAGATCAAGAACTCCCCCAAACTAGCGCTGAGAAAAAAGAATACAAGGAAAACTGTGCGGYGTGCTTTTGCAACTTTACCGAAATCACGTCAGAAAAGGGGGCGTGGCATAGTTATTATGAAACAATTCGATTGTTTACGCGTTCATCTGCGTGATTTTTTTTGATTTGACAATAGTGAGTCATTCATGGAAGCGAATAATAATTTTCTTGAGTCGTCATTCCTAAACACTCAGTGTCAGCTTTCATTCCGGACTGTTATATTCTCCTCCGTCTGTTTTTTCTTCTCGAACCGTTATTTTCATCTTGGTCCGCTTTGATCATGTAGAGCCAACCAAAGTATAAAGTCTCAATTTTTCCACAATTTCAAAATATACTGGATCAAATTACACTGTTAGCATTGTGTATGGTATCCTTTTTGTATGGATTTCAGCAGTAGATCCAAAAAATAGATCCCTTTTATGTTTCATACAATTCGATATTTTGAGAATAATTGAAAGATACTGTAAATTTTTTCAGGACTTTAATGTAGACTTTTTTCTAAGAAAACTCAAAAAAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>189 158 123 78 66 52 51 48 38 30 29 24 23 19 19 18 14 7 7 5 2</canonical_bands>
                <polymorphic_bands>189 158 123 78 66 52 51 48 38 30 29 24 23 19 19 18 14 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAACCCCATAAAATGAATTTAGA</pcr_primer_p1>
		<pcr_primer_p2>GAGTGTTTAGGAATGACGACTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAACCCCATAAAATGAATTTAGATCAAGAACTCCCCCAAACTAGCGCTGAGAAAAAAGAATACAAGGAAAACTGTGCGGTGTGCTTTTGCAACTTTACCGAAATCACGTCAGAAAAGGGGGCGTGGCATAGTTATTATGAAACAATTCGATTGTTTACGCGTTCATCTGCGTGATTTTTTTTGATTTGACAATAGTGAGTCATTCATGGAAGCGAATAATAATTTTCTTGAGTCGTCATTCCTAAACACTC</canonical_amplicon>
		<polymorphic_amplicon>TAACCCCATAAAATGAATTTAGATCAAGAACTCCCCCAAACTAGCGCTGAGAAAAAAGAATACAAGGAAAACTGTGCGGYGTGCTTTTGCAACTTTACCGAAATCACGTCAGAAAAGGGGGCGTGGCATAGTTATTATGAAACAATTCGATTGTTTACGCGTTCATCTGCGTGATTTTTTTTGATTTGACAATAGTGAGTCATTCATGGAAGCGAATAATAATTTTCTTGAGTCGTCATTCCTAAACACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24938</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1577937</contig_pos>
        <strand>+</strand>
        <context>CGAAATCACG[C/T]CAGAAAAGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATACAAGGAAAACTGTGCGGTGTGCTTTTGCAACTTTACCGAAATCACG</left_flank>
        <right_flank>CAGAAAAGGGGGCGTGGCATAGTTATTATGAAACAATTCGATTGTTTACG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATACGAATGTCGAGCATCTTGCTCCGTTGCAGCACTTGACACGTTATCTCATAATTTCCTTTTTATCATTGTATTATTTTAGCTTTTTTCTCTGAAAATCCTGAAAAGGTAAATCTGTGTATGATTATAGCGGTCCGAGAAGAAAATAGCAATCCTAACGGAAATCATTCACAAATCATGTTTCTCATCAATCTTTGGCACTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTTCATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAACCTTGTTTGCTAGGTAAAATACCAGCTTTTTTACATGGCTGAATAACCCCATAAAATGAATTTAGATCAAGAACTCCCCCAAACTAGCGCTGAGAAAAAAGAATACAAGGAAAACTGTGCGGTGTGCTTTTGCAACTTTACCGAAATCACGTCAGAAAAGGGGGCGTGGCATAGTTATTATGAAACAATTCGATTGTTTACGCGTTCATCTGCGTGATTTTTTTTGATTTGACAATAGTGAGTCATTCATGGAAGCGAATAATAATTTTCTTGAGTCGTCATTCCTAAACACTCAGTGTCAGCTTTCATTCCGGACTGTTATATTCTCCTCCGTCTGTTTTTTCTTCTCGAACCGTTATTTTCATCTTGGTCCGCTTTGATCATGTAGAGCCAACCAAAGTATAAAGTCTCAATTTTTCCACAATTTCAAAATATACTGGATCAAATTACACTGTTAGCATTGTGTATGGTATCCTTTTTGTATGGATTTCAGCAGTAGATCCAAAAAATAGATCCCTTTTATGTTTCATACAATTCGATATTTTGAGAATAATTGAAAGATACTGTAAATTTTTTCAGGACTTTAATGTAGACTTTTTTCTAAGAAAACTCAAAAAAAAATATCTGTTCGACCCATACTATAGGCTTCCTT</canonical>
            <polymorphic>AAAATACGAATGTCGAGCATCTTGCTCCGTTGCAGCACTTGACACGTTATCTCATAATTTCCTTTTTATCATTGTATTATTTTAGCTTTTTTCTCTGAAAATCCTGAAAAGGTAAATCTGTGTATGATTATAGCGGTCCGAGAAGAAAATAGCAATCCTAACGGAAATCATTCACAAATCATGTTTCTCATCAATCTTTGGCACTTGGTCTCTTTATTTCACTCTGAACCAATGAAAAGTATTTCTTAATTGTTGTTCACATTTTTTCATTCCATACACGATGTTAAATTCTTCCTAAAACTCCCGATTTTCATTCTTGTTAATGGGATTATTCAGCTAGGTAAAAAACCTTGTTTGCTAGGTAAAATACCAGCTTTTTTACATGGCTGAATAACCCCATAAAATGAATTTAGATCAAGAACTCCCCCAAACTAGCGCTGAGAAAAAAGAATACAAGGAAAACTGTGCGGTGTGCTTTTGCAACTTTACCGAAATCACGYCAGAAAAGGGGGCGTGGCATAGTTATTATGAAACAATTCGATTGTTTACGCGTTCATCTGCGTGATTTTTTTTGATTTGACAATAGTGAGTCATTCATGGAAGCGAATAATAATTTTCTTGAGTCGTCATTCCTAAACACTCAGTGTCAGCTTTCATTCCGGACTGTTATATTCTCCTCCGTCTGTTTTTTCTTCTCGAACCGTTATTTTCATCTTGGTCCGCTTTGATCATGTAGAGCCAACCAAAGTATAAAGTCTCAATTTTTCCACAATTTCAAAATATACTGGATCAAATTACACTGTTAGCATTGTGTATGGTATCCTTTTTGTATGGATTTCAGCAGTAGATCCAAAAAATAGATCCCTTTTATGTTTCATACAATTCGATATTTTGAGAATAATTGAAAGATACTGTAAATTTTTTCAGGACTTTAATGTAGACTTTTTTCTAAGAAAACTCAAAAAAAAATATCTGTTCGACCCATACTATAGGCTTCCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>498 277 96 86 43</canonical_bands>
                <polymorphic_bands>775 96 86 43</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>503 453 44</canonical_bands>
                <polymorphic_bands>956 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAACCCCATAAAATGAATTTAGA</pcr_primer_p1>
		<pcr_primer_p2>GAGTGTTTAGGAATGACGACTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAACCCCATAAAATGAATTTAGATCAAGAACTCCCCCAAACTAGCGCTGAGAAAAAAGAATACAAGGAAAACTGTGCGGTGTGCTTTTGCAACTTTACCGAAATCACGTCAGAAAAGGGGGCGTGGCATAGTTATTATGAAACAATTCGATTGTTTACGCGTTCATCTGCGTGATTTTTTTTGATTTGACAATAGTGAGTCATTCATGGAAGCGAATAATAATTTTCTTGAGTCGTCATTCCTAAACACTC</canonical_amplicon>
		<polymorphic_amplicon>TAACCCCATAAAATGAATTTAGATCAAGAACTCCCCCAAACTAGCGCTGAGAAAAAAGAATACAAGGAAAACTGTGCGGTGTGCTTTTGCAACTTTACCGAAATCACGYCAGAAAAGGGGGCGTGGCATAGTTATTATGAAACAATTCGATTGTTTACGCGTTCATCTGCGTGATTTTTTTTGATTTGACAATAGTGAGTCATTCATGGAAGCGAATAATAATTTTCTTGAGTCGTCATTCCTAAACACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24939</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1579136</contig_pos>
        <strand>+</strand>
        <context>AGCTTATTTC[A/G]GAATCAATAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGAAAAAACGGTATTCCATGCTAGCAAGGTCTAGTCATAGCTTATTTC</left_flank>
        <right_flank>GAATCAATACTCCTCTCATTCTGTTCTGTATGAAATTTCCTATTTCTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGTCATGCGCAAGGAACAGCAATTGGCAGAGCATTTGCTCAACATGCCACTCTGCATCTTCTGCAACTGTTCCCACAAATCCGAAGATTGCCCAACTGTGGTGGATACGGTGAAAAGAATCGAAATTCTGTTGAAGAAGGAGTTGTGTCTCGTCTGCATGAGTCACAATAGAATCCTCTCGTGTCCAAGGGAATCGGTGATCTGCAGAATGTGCAACAAGATGAATCACCACGTCGCAATCTGCTATCTCAAAGATTTGAAGGTCCGAAAAGAGAAGTAATTGTTGTCCAAACCTTCGAATGCATATTCAATTTTGTTTGATTCGGTTATTTTGGCAAATTAAATTGAAAAATTGAGTTAAACAGAATTTTTTTTTTGAAATAAAGGGAAAAAGTAAATATCCACAATTTGACCAAAAAAGTATTTAAAAAACAAAGCTATGTGAGAAAAGAAAAAACGGTATTCCATGCTAGCAAGGTCTAGTCATAGCTTATTTCAGAATCAATACTCCTCTCATTCTGTTCTGTATGAAATTTCCTATTTCTTCTATTCAAGTCTCACAAGTGAAAGTCAGCAGAAACCACTCGCATAGCTCCTAAGAGCATGGTCAAAAGCCTATGAATCCGTTTTCAAAGTCTGTTTACAAGACCTTTGAAGTGCTGAAATTTCAGCTTCAGTACCAAAAATCCCATTTTCAGTGTAAAATCGACAATTTTCAAGTTTGATTTTTCTCCACTCCAAGGAGGTTTTTGGAGTTGAAACTTTTTGTATTATACTTATTGTCGGATTAAAAAAAGTGACACCTGAAAATCTCGGAGACAGCGCTCATGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTAGATAACAAATTTATTCATGTGAATCTAGTGGGATTTTCTGAACGAAATGTTGATTTCTTGATATAAAAACGATCGTTAGCATCTCTAGAATCTATTTTTATGCAAAAAACTAAAATTAAACGCGAAAGTA</canonical>
            <polymorphic>TTTGTCATGCGCAAGGAACAGCAATTGGCAGAGCATTTGCTCAACATGCCACTCTGCATCTTCTGCAACTGTTCCCACAAATCCGAAGATTGCCCAACTGTGGTGGATACGGTGAAAAGAATCGAAATTCTGTTGAAGAAGGAGTTGTGTCTCGTCTGCATGAGTCACAATAGAATCCTCTCGTGTCCAAGGGAATCGGTGATCTGCAGAATGTGCAACAAGATGAATCACCACGTCGCAATCTGCTATCTCAAAGATTTGAAGGTCCGAAAAGAGAAGTAATTGTTGTCCAAACCTTCGAATGCATATTCAATTTTGTTTGATTCGGTTATTTTGGCAAATTAAATTGAAAAATTGAGTTAAACAGAATTTTTTTTTTGAAATAAAGGGAAAAAGTAAATATCCACAATTTGACCAAAAAAGTATTTAAAAAACAAAGCTATGTGAGAAAAGAAAAAACGGTATTCCATGCTAGCAAGGTCTAGTCATAGCTTATTTCRGAATCAATACTCCTCTCATTCTGTTCTGTATGAAATTTCCTATTTCTTCTATTCAAGTCTCACAAGTGAAAGTCAGCAGAAACCACTCGCATAGCTCCTAAGAGCATGGTCAAAAGCCTATGAATCCGTTTTCAAAGTCTGTTTACAAGACCTTTGAAGTGCTGAAATTTCAGCTTCAGTACCAAAAATCCCATTTTCAGTGTAAAATCGACAATTTTCAAGTTTGATTTTTCTCCACTCCAAGGAGGTTTTTGGAGTTGAAACTTTTTGTATTATACTTATTGTCGGATTAAAAAAAGTGACACCTGAAAATCTCGGAGACAGCGCTCATGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTAGATAACAAATTTATTCATGTGAATCTAGTGGGATTTTCTGAACGAAATGTTGATTTCTTGATATAAAAACGATCGTTAGCATCTCTAGAATCTATTTTTATGCAAAAAACTAAAATTAAACGCGAAAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGTTTGATTCGGTTATTTT</pcr_primer_p1>
		<pcr_primer_p2>TGAGACTTGAATAGAAGAAATAGGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGTTTGATTCGGTTATTTTGGCAAATTAAATTGAAAAATTGAGTTAAACAGAATTTTTTTTTTGAAATAAAGGGAAAAAGTAAATATCCACAATTTGACCAAAAAAGTATTTAAAAAACAAAGCTATGTGAGAAAAGAAAAAACGGTATTCCATGCTAGCAAGGTCTAGTCATAGCTTATTTCAGAATCAATACTCCTCTCATTCTGTTCTGTATGAAATTTCCTATTTCTTCTATTCAAGTCTCA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGTTTGATTCGGTTATTTTGGCAAATTAAATTGAAAAATTGAGTTAAACAGAATTTTTTTTTTGAAATAAAGGGAAAAAGTAAATATCCACAATTTGACCAAAAAAGTATTTAAAAAACAAAGCTATGTGAGAAAAGAAAAAACGGTATTCCATGCTAGCAAGGTCTAGTCATAGCTTATTTCRGAATCAATACTCCTCTCATTCTGTTCTGTATGAAATTTCCTATTTCTTCTATTCAAGTCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24940</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1579203</contig_pos>
        <strand>+</strand>
        <context>GTCTCACAAG[G/T]GAAAGTCAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATTCTGTTCTGTATGAAATTTCCTATTTCTTCTATTCAAGTCTCACAAG</left_flank>
        <right_flank>GAAAGTCAGCAGAAACCACTCGCATAGCTCCTAAGAGCATGGTCAAAAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTGTTCCCACAAATCCGAAGATTGCCCAACTGTGGTGGATACGGTGAAAAGAATCGAAATTCTGTTGAAGAAGGAGTTGTGTCTCGTCTGCATGAGTCACAATAGAATCCTCTCGTGTCCAAGGGAATCGGTGATCTGCAGAATGTGCAACAAGATGAATCACCACGTCGCAATCTGCTATCTCAAAGATTTGAAGGTCCGAAAAGAGAAGTAATTGTTGTCCAAACCTTCGAATGCATATTCAATTTTGTTTGATTCGGTTATTTTGGCAAATTAAATTGAAAAATTGAGTTAAACAGAATTTTTTTTTTGAAATAAAGGGAAAAAGTAAATATCCACAATTTGACCAAAAAAGTATTTAAAAAACAAAGCTATGTGAGAAAAGAAAAAACGGTATTCCATGCTAGCAAGGTCTAGTCATAGCTTATTTCAGAATCAATACTCCTCTCATTCTGTTCTGTATGAAATTTCCTATTTCTTCTATTCAAGTCTCACAAGTGAAAGTCAGCAGAAACCACTCGCATAGCTCCTAAGAGCATGGTCAAAAGCCTATGAATCCGTTTTCAAAGTCTGTTTACAAGACCTTTGAAGTGCTGAAATTTCAGCTTCAGTACCAAAAATCCCATTTTCAGTGTAAAATCGACAATTTTCAAGTTTGATTTTTCTCCACTCCAAGGAGGTTTTTGGAGTTGAAACTTTTTGTATTATACTTATTGTCGGATTAAAAAAAGTGACACCTGAAAATCTCGGAGACAGCGCTCATGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTAGATAACAAATTTATTCATGTGAATCTAGTGGGATTTTCTGAACGAAATGTTGATTTCTTGATATAAAAACGATCGTTAGCATCTCTAGAATCTATTTTTATGCAAAAAACTAAAATTAAACGCGAAAGTAGATCGAACGAGCCGAAATTCTGAAATAATACGTTTTTGCCGCACTTTTTCGTAGATCAAAAAAGCTA</canonical>
            <polymorphic>ACTGTTCCCACAAATCCGAAGATTGCCCAACTGTGGTGGATACGGTGAAAAGAATCGAAATTCTGTTGAAGAAGGAGTTGTGTCTCGTCTGCATGAGTCACAATAGAATCCTCTCGTGTCCAAGGGAATCGGTGATCTGCAGAATGTGCAACAAGATGAATCACCACGTCGCAATCTGCTATCTCAAAGATTTGAAGGTCCGAAAAGAGAAGTAATTGTTGTCCAAACCTTCGAATGCATATTCAATTTTGTTTGATTCGGTTATTTTGGCAAATTAAATTGAAAAATTGAGTTAAACAGAATTTTTTTTTTGAAATAAAGGGAAAAAGTAAATATCCACAATTTGACCAAAAAAGTATTTAAAAAACAAAGCTATGTGAGAAAAGAAAAAACGGTATTCCATGCTAGCAAGGTCTAGTCATAGCTTATTTCAGAATCAATACTCCTCTCATTCTGTTCTGTATGAAATTTCCTATTTCTTCTATTCAAGTCTCACAAGKGAAAGTCAGCAGAAACCACTCGCATAGCTCCTAAGAGCATGGTCAAAAGCCTATGAATCCGTTTTCAAAGTCTGTTTACAAGACCTTTGAAGTGCTGAAATTTCAGCTTCAGTACCAAAAATCCCATTTTCAGTGTAAAATCGACAATTTTCAAGTTTGATTTTTCTCCACTCCAAGGAGGTTTTTGGAGTTGAAACTTTTTGTATTATACTTATTGTCGGATTAAAAAAAGTGACACCTGAAAATCTCGGAGACAGCGCTCATGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTAGATAACAAATTTATTCATGTGAATCTAGTGGGATTTTCTGAACGAAATGTTGATTTCTTGATATAAAAACGATCGTTAGCATCTCTAGAATCTATTTTTATGCAAAAAACTAAAATTAAACGCGAAAGTAGATCGAACGAGCCGAAATTCTGAAATAATACGTTTTTGCCGCACTTTTTCGTAGATCAAAAAAGCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>173 143 116 87 76 64 41 40 35 35 25 24 18 18 17 16 15 14 10 9 9 6 3 3 3</canonical_bands>
                <polymorphic_bands>173 143 116 87 76 64 41 40 35 35 25 24 23 18 18 16 15 14 10 9 9 3 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATACTCCTCTCATTCTGTTCTG</pcr_primer_p1>
		<pcr_primer_p2>AAAATCTAGGCAATTTTTGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>695</pcr_amplicon_size>
		<canonical_amplicon>AATACTCCTCTCATTCTGTTCTGTATGAAATTTCCTATTTCTTCTATTCAAGTCTCACAAGTGAAAGTCAGCAGAAACCACTCG</canonical_amplicon>
		<polymorphic_amplicon>AATACTCCTCTCATTCTGTTCTGTATGAAATTTCCTATTTCTTCTATTCAAGTCTCACAAGKGAAAGTCAGCAGAAACCACTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24941</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1611883</contig_pos>
        <strand>+</strand>
        <context>TTAGGTGATT[A/G]GGCAGCAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTAGTAAGTCTTTCCATGATTTCGTTTAGTGATGAGAAATTAGGTGATT</left_flank>
        <right_flank>GGCAGCAGTTCGAGAGGTTGATGCTTTTCGACTCGTTTACCGCGATGGTG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATGATGTTTTAGACGAAGGGAGAGAAGGAGGAGAGTTGAGGAAGAGTATAATATTTTTTCAGAAAAAAAACATATTTTCAGAGAATCAGACAAGTTGTTGATTTTCAGTCACAGGGATAAACAATTAGTTTTTCAATTGGGAAAGTTTCAGTTTTTGTAACAGGGAAAAATGACAAGTCAAGTTTTTTCGAGGGATTATTCGAAATTCAGAAAAAGTGGATTTACTGAACAGTTTAGTGGTTTTAGGAAAAAATAGAAAAAAAGTAGGGTTCTCATTCAAATGTGGTTTTTGATATTGTAACCAGTTAAACAGTACCATCAAGAGGATTATGGCGTCTTGATAGCTGGATAATCAGAATGAGATCACAGATGTTAAAAGGGAAGAGTTTTGAGTTTGAAAGGAAATGGAAAAGAATGAGAAAGGAGGAGATGAAAAGAAAAAATTCGTTTAGTAAGTCTTTCCATGATTTCGTTTAGTGATGAGAAATTAGGTGATTAGGCAGCAGTTCGAGAGGTTGATGCTTTTCGACTCGTTTACCGCGATGGTGTCAGCCATCTCTCCTCCTGGTACGAAACCGTACTTCATCTTGATCATGCGTCTGAAAATTTTCTTCAAATTTAGTTTTTCAAAGGTTTTTCAGTTCCTGTTTCAAGTTTTAGTACATTAATTGATGAAAAAATTGAACTCAATCAAGTGAAAGGGGGCGCCCTACATATTAGAGCATTCATTAAACTTTTTGAAGTGCTTCAATTATAGTCGACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAATTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATTTGCAGAAACAAGTTTTTGTCCTTACGT</canonical>
            <polymorphic>GAATGATGTTTTAGACGAAGGGAGAGAAGGAGGAGAGTTGAGGAAGAGTATAATATTTTTTCAGAAAAAAAACATATTTTCAGAGAATCAGACAAGTTGTTGATTTTCAGTCACAGGGATAAACAATTAGTTTTTCAATTGGGAAAGTTTCAGTTTTTGTAACAGGGAAAAATGACAAGTCAAGTTTTTTCGAGGGATTATTCGAAATTCAGAAAAAGTGGATTTACTGAACAGTTTAGTGGTTTTAGGAAAAAATAGAAAAAAAGTAGGGTTCTCATTCAAATGTGGTTTTTGATATTGTAACCAGTTAAACAGTACCATCAAGAGGATTATGGCGTCTTGATAGCTGGATAATCAGAATGAGATCACAGATGTTAAAAGGGAAGAGTTTTGAGTTTGAAAGGAAATGGAAAAGAATGAGAAAGGAGGAGATGAAAAGAAAAAATTCGTTTAGTAAGTCTTTCCATGATTTCGTTTAGTGATGAGAAATTAGGTGATTRGGCAGCAGTTCGAGAGGTTGATGCTTTTCGACTCGTTTACCGCGATGGTGTCAGCCATCTCTCCTCCTGGTACGAAACCGTACTTCATCTTGATCATGCGTCTGAAAATTTTCTTCAAATTTAGTTTTTCAAAGGTTTTTCAGTTCCTGTTTCAAGTTTTAGTACATTAATTGATGAAAAAATTGAACTCAATCAAGTGAAAGGGGGCGCCCTACATATTAGAGCATTCATTAAACTTTTTGAAGTGCTTCAATTATAGTCGACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAATTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATTTGCAGAAACAAGTTTTTGTCCTTACGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAATGAGAAAGGAGGAGAT</pcr_primer_p1>
		<pcr_primer_p2>TAAAACTTGAAACAGGAACTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGAATGAGAAAGGAGGAGATGAAAAGAAAAAATTCGTTTAGTAAGTCTTTCCATGATTTCGTTTAGTGATGAGAAATTAGGTGATTAGGCAGCAGTTCGAGAGGTTGATGCTTTTCGACTCGTTTACCGCGATGGTGTCAGCCATCTCTCCTCCTGGTACGAAACCGTACTTCATCTTGATCATGCGTCTGAAAATTTTCTTCAAATTTAGTTTTTCAAAGGTTTTTCAGTTCCTGTTTCAAGTTTTA</canonical_amplicon>
		<polymorphic_amplicon>AAAGAATGAGAAAGGAGGAGATGAAAAGAAAAAATTCGTTTAGTAAGTCTTTCCATGATTTCGTTTAGTGATGAGAAATTAGGTGATTRGGCAGCAGTTCGAGAGGTTGATGCTTTTCGACTCGTTTACCGCGATGGTGTCAGCCATCTCTCCTCCTGGTACGAAACCGTACTTCATCTTGATCATGCGTCTGAAAATTTTCTTCAAATTTAGTTTTTCAAAGGTTTTTCAGTTCCTGTTTCAAGTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24942</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1612014</contig_pos>
        <strand>+</strand>
        <context>TTAGTTTTTC[A/G]AAGGTTTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACTTCATCTTGATCATGCGTCTGAAAATTTTCTTCAAATTTAGTTTTTC</left_flank>
        <right_flank>AAGGTTTTTCAGTTCCTGTTTCAAGTTTTAGTACATTAATTGATGAAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCAATTGGGAAAGTTTCAGTTTTTGTAACAGGGAAAAATGACAAGTCAAGTTTTTTCGAGGGATTATTCGAAATTCAGAAAAAGTGGATTTACTGAACAGTTTAGTGGTTTTAGGAAAAAATAGAAAAAAAGTAGGGTTCTCATTCAAATGTGGTTTTTGATATTGTAACCAGTTAAACAGTACCATCAAGAGGATTATGGCGTCTTGATAGCTGGATAATCAGAATGAGATCACAGATGTTAAAAGGGAAGAGTTTTGAGTTTGAAAGGAAATGGAAAAGAATGAGAAAGGAGGAGATGAAAAGAAAAAATTCGTTTAGTAAGTCTTTCCATGATTTCGTTTAGTGATGAGAAATTAGGTGATTAGGCAGCAGTTCGAGAGGTTGATGCTTTTCGACTCGTTTACCGCGATGGTGTCAGCCATCTCTCCTCCTGGTACGAAACCGTACTTCATCTTGATCATGCGTCTGAAAATTTTCTTCAAATTTAGTTTTTCAAAGGTTTTTCAGTTCCTGTTTCAAGTTTTAGTACATTAATTGATGAAAAAATTGAACTCAATCAAGTGAAAGGGGGCGCCCTACATATTAGAGCATTCATTAAACTTTTTGAAGTGCTTCAATTATAGTCGACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAATTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATTTGCAGAAACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATA</canonical>
            <polymorphic>TTTTCAATTGGGAAAGTTTCAGTTTTTGTAACAGGGAAAAATGACAAGTCAAGTTTTTTCGAGGGATTATTCGAAATTCAGAAAAAGTGGATTTACTGAACAGTTTAGTGGTTTTAGGAAAAAATAGAAAAAAAGTAGGGTTCTCATTCAAATGTGGTTTTTGATATTGTAACCAGTTAAACAGTACCATCAAGAGGATTATGGCGTCTTGATAGCTGGATAATCAGAATGAGATCACAGATGTTAAAAGGGAAGAGTTTTGAGTTTGAAAGGAAATGGAAAAGAATGAGAAAGGAGGAGATGAAAAGAAAAAATTCGTTTAGTAAGTCTTTCCATGATTTCGTTTAGTGATGAGAAATTAGGTGATTAGGCAGCAGTTCGAGAGGTTGATGCTTTTCGACTCGTTTACCGCGATGGTGTCAGCCATCTCTCCTCCTGGTACGAAACCGTACTTCATCTTGATCATGCGTCTGAAAATTTTCTTCAAATTTAGTTTTTCRAAGGTTTTTCAGTTCCTGTTTCAAGTTTTAGTACATTAATTGATGAAAAAATTGAACTCAATCAAGTGAAAGGGGGCGCCCTACATATTAGAGCATTCATTAAACTTTTTGAAGTGCTTCAATTATAGTCGACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAATTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATTTGCAGAAACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTTAGTAAGTCTTTCCATGAT</pcr_primer_p1>
		<pcr_primer_p2>TCACTTGATTGAGTTCAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CGTTTAGTAAGTCTTTCCATGATTTCGTTTAGTGATGAGAAATTAGGTGATTAGGCAGCAGTTCGAGAGGTTGATGCTTTTCGACTCGTTTACCGCGATGGTGTCAGCCATCTCTCCTCCTGGTACGAAACCGTACTTCATCTTGATCATGCGTCTGAAAATTTTCTTCAAATTTAGTTTTTCAAAGGTTTTTCAGTTCCTGTTTCAAGTTTTAGTACATTAATTGATGAAAAAATTGAACTCAATCAAGTGA</canonical_amplicon>
		<polymorphic_amplicon>CGTTTAGTAAGTCTTTCCATGATTTCGTTTAGTGATGAGAAATTAGGTGATTAGGCAGCAGTTCGAGAGGTTGATGCTTTTCGACTCGTTTACCGCGATGGTGTCAGCCATCTCTCCTCCTGGTACGAAACCGTACTTCATCTTGATCATGCGTCTGAAAATTTTCTTCAAATTTAGTTTTTCRAAGGTTTTTCAGTTCCTGTTTCAAGTTTTAGTACATTAATTGATGAAAAAATTGAACTCAATCAAGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24943</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1612265</contig_pos>
        <strand>+</strand>
        <context>TTAAATATTT[G/T]CATTTAAYTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTT</left_flank>
        <right_flank>CATTTAATTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGAGTTTTGAGTTTGAAAGGAAATGGAAAAGAATGAGAAAGGAGGAGATGAAAAGAAAAAATTCGTTTAGTAAGTCTTTCCATGATTTCGTTTAGTGATGAGAAATTAGGTGATTAGGCAGCAGTTCGAGAGGTTGATGCTTTTCGACTCGTTTACCGCGATGGTGTCAGCCATCTCTCCTCCTGGTACGAAACCGTACTTCATCTTGATCATGCGTCTGAAAATTTTCTTCAAATTTAGTTTTTCAAAGGTTTTTCAGTTCCTGTTTCAAGTTTTAGTACATTAATTGATGAAAAAATTGAACTCAATCAAGTGAAAGGGGGCGCCCTACATATTAGAGCATTCATTAAACTTTTTGAAGTGCTTCAATTATAGTCGACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAATTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATTTGCAGAAACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTTTTTATAGAAAAAAATAGTTGAGTATTTTTTTTAATAATTTGATCCTAAAAATCCCATTATGAATTTCCTAACTTTCAACATTATGAAACCCCAAATTAATTTCAAACTAAGGAATTTTTTTAAATCAAAGGTCACATTCAATTTTCAATTTCG</canonical>
            <polymorphic>GAAGAGTTTTGAGTTTGAAAGGAAATGGAAAAGAATGAGAAAGGAGGAGATGAAAAGAAAAAATTCGTTTAGTAAGTCTTTCCATGATTTCGTTTAGTGATGAGAAATTAGGTGATTAGGCAGCAGTTCGAGAGGTTGATGCTTTTCGACTCGTTTACCGCGATGGTGTCAGCCATCTCTCCTCCTGGTACGAAACCGTACTTCATCTTGATCATGCGTCTGAAAATTTTCTTCAAATTTAGTTTTTCAAAGGTTTTTCAGTTCCTGTTTCAAGTTTTAGTACATTAATTGATGAAAAAATTGAACTCAATCAAGTGAAAGGGGGCGCCCTACATATTAGAGCATTCATTAAACTTTTTGAAGTGCTTCAATTATAGTCGACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTKCATTTAATTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATTTGCAGAAACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTTTTTATAGAAAAAAATAGTTGAGTATTTTTTTTAATAATTTGATCCTAAAAATCCCATTATGAATTTCCTAACTTTCAACATTATGAAACCCCAAATTAATTTCAAACTAAGGAATTTTTTTAAATCAAAGGTCACATTCAATTTTCAATTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCATTAAACTTTTTGAAGTGCT</pcr_primer_p1>
		<pcr_primer_p2>AATATCTAGTTTCAATATCCGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTCATTAAACTTTTTGAAGTGCTTCAATTATAGTCGACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAATTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATT</canonical_amplicon>
		<polymorphic_amplicon>TTCATTAAACTTTTTGAAGTGCTTCAATTATAGTCGACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTKCATTTAATTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24944</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1612273</contig_pos>
        <strand>+</strand>
        <context>TTKCATTTAA[C/T]TTTTTTCTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAA</left_flank>
        <right_flank>TTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAGTTTGAAAGGAAATGGAAAAGAATGAGAAAGGAGGAGATGAAAAGAAAAAATTCGTTTAGTAAGTCTTTCCATGATTTCGTTTAGTGATGAGAAATTAGGTGATTAGGCAGCAGTTCGAGAGGTTGATGCTTTTCGACTCGTTTACCGCGATGGTGTCAGCCATCTCTCCTCCTGGTACGAAACCGTACTTCATCTTGATCATGCGTCTGAAAATTTTCTTCAAATTTAGTTTTTCAAAGGTTTTTCAGTTCCTGTTTCAAGTTTTAGTACATTAATTGATGAAAAAATTGAACTCAATCAAGTGAAAGGGGGCGCCCTACATATTAGAGCATTCATTAAACTTTTTGAAGTGCTTCAATTATAGTCGACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAATTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATTTGCAGAAACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTTTTTATAGAAAAAAATAGTTGAGTATTTTTTTTAATAATTTGATCCTAAAAATCCCATTATGAATTTCCTAACTTTCAACATTATGAAACCCCAAATTAATTTCAAACTAAGGAATTTTTTTAAATCAAAGGTCACATTCAATTTTCAATTTCGAATTGTTC</canonical>
            <polymorphic>TTGAGTTTGAAAGGAAATGGAAAAGAATGAGAAAGGAGGAGATGAAAAGAAAAAATTCGTTTAGTAAGTCTTTCCATGATTTCGTTTAGTGATGAGAAATTAGGTGATTAGGCAGCAGTTCGAGAGGTTGATGCTTTTCGACTCGTTTACCGCGATGGTGTCAGCCATCTCTCCTCCTGGTACGAAACCGTACTTCATCTTGATCATGCGTCTGAAAATTTTCTTCAAATTTAGTTTTTCAAAGGTTTTTCAGTTCCTGTTTCAAGTTTTAGTACATTAATTGATGAAAAAATTGAACTCAATCAAGTGAAAGGGGGCGCCCTACATATTAGAGCATTCATTAAACTTTTTGAAGTGCTTCAATTATAGTCGACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAAYTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATTTGCAGAAACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTTTTTATAGAAAAAAATAGTTGAGTATTTTTTTTAATAATTTGATCCTAAAAATCCCATTATGAATTTCCTAACTTTCAACATTATGAAACCCCAAATTAATTTCAAACTAAGGAATTTTTTTAAATCAAAGGTCACATTCAATTTTCAATTTCGAATTGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>127 120 119 84 73 71 57 53 51 44 33 32 27 26 19 15 12 11 8 7 7 4</canonical_bands>
                <polymorphic_bands>153 127 119 84 73 71 57 53 51 44 32 27 26 19 15 12 11 8 7 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCATTAAACTTTTTGAAGTGCT</pcr_primer_p1>
		<pcr_primer_p2>AATATCTAGTTTCAATATCCGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTCATTAAACTTTTTGAAGTGCTTCAATTATAGTCGACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAATTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATT</canonical_amplicon>
		<polymorphic_amplicon>TTCATTAAACTTTTTGAAGTGCTTCAATTATAGTCGACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAAYTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24945</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1612287</contig_pos>
        <strand></strand>
        <context>TTTCTTATTT[C/T]AAAGCTCACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATTTGTATTATACAGATTAAATATTTTCATTTAATTTTTTTCTTATTT</left_flank>
        <right_flank>AAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGGAAAAGAATGAGAAAGGAGGAGATGAAAAGAAAAAATTCGTTTAGTAAGTCTTTCCATGATTTCGTTTAGTGATGAGAAATTAGGTGATTAGGCAGCAGTTCGAGAGGTTGATGCTTTTCGACTCGTTTACCGCGATGGTGTCAGCCATCTCTCCTCCTGGTACGAAACCGTACTTCATCTTGATCATGCGTCTGAAAATTTTCTTCAAATTTAGTTTTTCAAAGGTTTTTCAGTTCCTGTTTCAAGTTTTAGTACATTAATTGATGAAAAAATTGAACTCAATCAAGTGAAAGGGGGCGCCCTACATATTAGAGCATTCATTAAACTTTTTGAAGTGCTTCAATTATAGTCGACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAATTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATTTGCAGAAACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTTTTTATAGAAAAAAATAGTTGAGTATTTTTTTTAATAATTTGATCCTAAAAATCCCATTATGAATTTCCTAACTTTCAACATTATGAAACCCCAAATTAATTTCAAACTAAGGAATTTTTTTAAATCAAAGGTCACATTCAATTTTCAATTTCGAATTGTTCATTCTACTTCAGTG</canonical>
            <polymorphic>AAATGGAAAAGAATGAGAAAGGAGGAGATGAAAAGAAAAAATTCGTTTAGTAAGTCTTTCCATGATTTCGTTTAGTGATGAGAAATTAGGTGATTAGGCAGCAGTTCGAGAGGTTGATGCTTTTCGACTCGTTTACCGCGATGGTGTCAGCCATCTCTCCTCCTGGTACGAAACCGTACTTCATCTTGATCATGCGTCTGAAAATTTTCTTCAAATTTAGTTTTTCAAAGGTTTTTCAGTTCCTGTTTCAAGTTTTAGTACATTAATTGATGAAAAAATTGAACTCAATCAAGTGAAAGGGGGCGCCCTACATATTAGAGCATTCATTAAACTTTTTGAAGTGCTTCAATTATAGTCGACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAATTTTTTTCTTATTTYAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATTTGCAGAAACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTTTTTATAGAAAAAAATAGTTGAGTATTTTTTTTAATAATTTGATCCTAAAAATCCCATTATGAATTTCCTAACTTTCAACATTATGAAACCCCAAATTAATTTCAAACTAAGGAATTTTTTTAAATCAAAGGTCACATTCAATTTTCAATTTCGAATTGTTCATTCTACTTCAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCATTAAACTTTTTGAAGTGCT</pcr_primer_p1>
		<pcr_primer_p2>AATATCTAGTTTCAATATCCGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTCATTAAACTTTTTGAAGTGCTTCAATTATAGTCGACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAATTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATT</canonical_amplicon>
		<polymorphic_amplicon>TTCATTAAACTTTTTGAAGTGCTTCAATTATAGTCGACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAATTTTTTTCTTATTTYAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24946</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1612358</contig_pos>
        <strand>+</strand>
        <context>CTAGATATTT[G/T]CAGAAACAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATTT</left_flank>
        <right_flank>CAGAAACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAGTGATGAGAAATTAGGTGATTAGGCAGCAGTTCGAGAGGTTGATGCTTTTCGACTCGTTTACCGCGATGGTGTCAGCCATCTCTCCTCCTGGTACGAAACCGTACTTCATCTTGATCATGCGTCTGAAAATTTTCTTCAAATTTAGTTTTTCAAAGGTTTTTCAGTTCCTGTTTCAAGTTTTAGTACATTAATTGATGAAAAAATTGAACTCAATCAAGTGAAAGGGGGCGCCCTACATATTAGAGCATTCATTAAACTTTTTGAAGTGCTTCAATTATAGTCGACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAATTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATTTGCAGAAACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTTTTTATAGAAAAAAATAGTTGAGTATTTTTTTTAATAATTTGATCCTAAAAATCCCATTATGAATTTCCTAACTTTCAACATTATGAAACCCCAAATTAATTTCAAACTAAGGAATTTTTTTAAATCAAAGGTCACATTCAATTTTCAATTTCGAATTGTTCATTCTACTTCAGTGTTCCCTTCTTTCCAAAAAATCCAATTAAGCTTTTTTTTCAAATTTAGAAGAGAATGCAATGGTTTGACTCA</canonical>
            <polymorphic>TTAGTGATGAGAAATTAGGTGATTAGGCAGCAGTTCGAGAGGTTGATGCTTTTCGACTCGTTTACCGCGATGGTGTCAGCCATCTCTCCTCCTGGTACGAAACCGTACTTCATCTTGATCATGCGTCTGAAAATTTTCTTCAAATTTAGTTTTTCAAAGGTTTTTCAGTTCCTGTTTCAAGTTTTAGTACATTAATTGATGAAAAAATTGAACTCAATCAAGTGAAAGGGGGCGCCCTACATATTAGAGCATTCATTAAACTTTTTGAAGTGCTTCAATTATAGTCGACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAATTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATTTKCAGAAACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTTTTTATAGAAAAAAATAGTTGAGTATTTTTTTTAATAATTTGATCCTAAAAATCCCATTATGAATTTCCTAACTTTCAACATTATGAAACCCCAAATTAATTTCAAACTAAGGAATTTTTTTAAATCAAAGGTCACATTCAATTTTCAATTTCGAATTGTTCATTCTACTTCAGTGTTCCCTTCTTTCCAAAAAATCCAATTAAGCTTTTTTTTCAAATTTAGAAGAGAATGCAATGGTTTGACTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 485 15</canonical_bands>
                <polymorphic_bands>985 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGCTCTATCCACGTTTTG</pcr_primer_p1>
		<pcr_primer_p2>CAGGTTTCTCTAACTGGAGAGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAATTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATTTGCAGAAACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTG</canonical_amplicon>
		<polymorphic_amplicon>AATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAATTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATTTKCAGAAACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24947</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1612434</contig_pos>
        <strand>+</strand>
        <context>GACAATAAAC[C/T]GAAACACAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAAC</left_flank>
        <right_flank>GAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCCATCTCTCCTCCTGGTACGAAACCGTACTTCATCTTGATCATGCGTCTGAAAATTTTCTTCAAATTTAGTTTTTCAAAGGTTTTTCAGTTCCTGTTTCAAGTTTTAGTACATTAATTGATGAAAAAATTGAACTCAATCAAGTGAAAGGGGGCGCCCTACATATTAGAGCATTCATTAAACTTTTTGAAGTGCTTCAATTATAGTCGACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAATTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATTTGCAGAAACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTTTTTATAGAAAAAAATAGTTGAGTATTTTTTTTAATAATTTGATCCTAAAAATCCCATTATGAATTTCCTAACTTTCAACATTATGAAACCCCAAATTAATTTCAAACTAAGGAATTTTTTTAAATCAAAGGTCACATTCAATTTTCAATTTCGAATTGTTCATTCTACTTCAGTGTTCCCTTCTTTCCAAAAAATCCAATTAAGCTTTTTTTTCAAATTTAGAAGAGAATGCAATGGTTTGACTCATCTTGACCCTAATTTCCGTTTTTTTTCCCAATAATGGCTTTGTGCGAGCGAACCTCGACTCATTTGAAGAAAAGGC</canonical>
            <polymorphic>CAGCCATCTCTCCTCCTGGTACGAAACCGTACTTCATCTTGATCATGCGTCTGAAAATTTTCTTCAAATTTAGTTTTTCAAAGGTTTTTCAGTTCCTGTTTCAAGTTTTAGTACATTAATTGATGAAAAAATTGAACTCAATCAAGTGAAAGGGGGCGCCCTACATATTAGAGCATTCATTAAACTTTTTGAAGTGCTTCAATTATAGTCGACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAATTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATTTGCAGAAACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACYGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTTTTTATAGAAAAAAATAGTTGAGTATTTTTTTTAATAATTTGATCCTAAAAATCCCATTATGAATTTCCTAACTTTCAACATTATGAAACCCCAAATTAATTTCAAACTAAGGAATTTTTTTAAATCAAAGGTCACATTCAATTTTCAATTTCGAATTGTTCATTCTACTTCAGTGTTCCCTTCTTTCCAAAAAATCCAATTAAGCTTTTTTTTCAAATTTAGAAGAGAATGCAATGGTTTGACTCATCTTGACCCTAATTTCCGTTTTTTTTCCCAATAATGGCTTTGTGCGAGCGAACCTCGACTCATTTGAAGAAAAGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAGTTTTTGTCCTTACGTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTAACCGAGAAAAACAGACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTT</canonical_amplicon>
		<polymorphic_amplicon>ACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACYGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24948</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1612483</contig_pos>
        <strand>+</strand>
        <context>AAGATGAAAT[C/G]AATAWTTGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAAT</left_flank>
        <right_flank>AATATTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGAAAATTTTCTTCAAATTTAGTTTTTCAAAGGTTTTTCAGTTCCTGTTTCAAGTTTTAGTACATTAATTGATGAAAAAATTGAACTCAATCAAGTGAAAGGGGGCGCCCTACATATTAGAGCATTCATTAAACTTTTTGAAGTGCTTCAATTATAGTCGACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAATTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATTTGCAGAAACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTTTTTATAGAAAAAAATAGTTGAGTATTTTTTTTAATAATTTGATCCTAAAAATCCCATTATGAATTTCCTAACTTTCAACATTATGAAACCCCAAATTAATTTCAAACTAAGGAATTTTTTTAAATCAAAGGTCACATTCAATTTTCAATTTCGAATTGTTCATTCTACTTCAGTGTTCCCTTCTTTCCAAAAAATCCAATTAAGCTTTTTTTTCAAATTTAGAAGAGAATGCAATGGTTTGACTCATCTTGACCCTAATTTCCGTTTTTTTTCCCAATAATGGCTTTGTGCGAGCGAACCTCGACTCATTTGAAGAAAAGGCCATCTTCTTGAATAATGCACAGCTTTCCCACTATTATTCCGGTCCCTGT</canonical>
            <polymorphic>TCTGAAAATTTTCTTCAAATTTAGTTTTTCAAAGGTTTTTCAGTTCCTGTTTCAAGTTTTAGTACATTAATTGATGAAAAAATTGAACTCAATCAAGTGAAAGGGGGCGCCCTACATATTAGAGCATTCATTAAACTTTTTGAAGTGCTTCAATTATAGTCGACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAATTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATTTGCAGAAACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATSAATATTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTTTTTATAGAAAAAAATAGTTGAGTATTTTTTTTAATAATTTGATCCTAAAAATCCCATTATGAATTTCCTAACTTTCAACATTATGAAACCCCAAATTAATTTCAAACTAAGGAATTTTTTTAAATCAAAGGTCACATTCAATTTTCAATTTCGAATTGTTCATTCTACTTCAGTGTTCCCTTCTTTCCAAAAAATCCAATTAAGCTTTTTTTTCAAATTTAGAAGAGAATGCAATGGTTTGACTCATCTTGACCCTAATTTCCGTTTTTTTTCCCAATAATGGCTTTGTGCGAGCGAACCTCGACTCATTTGAAGAAAAGGCCATCTTCTTGAATAATGCACAGCTTTCCCACTATTATTCCGGTCCCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAGTTTTTGTCCTTACGTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTAACCGAGAAAAACAGACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTT</canonical_amplicon>
		<polymorphic_amplicon>ACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATSAATATTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24949</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1612488</contig_pos>
        <strand>+</strand>
        <context>GAAATSAATA[A/T]TTGATTAGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATA</left_flank>
        <right_flank>TTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTTCTTCAAATTTAGTTTTTCAAAGGTTTTTCAGTTCCTGTTTCAAGTTTTAGTACATTAATTGATGAAAAAATTGAACTCAATCAAGTGAAAGGGGGCGCCCTACATATTAGAGCATTCATTAAACTTTTTGAAGTGCTTCAATTATAGTCGACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAATTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATTTGCAGAAACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTTTTTATAGAAAAAAATAGTTGAGTATTTTTTTTAATAATTTGATCCTAAAAATCCCATTATGAATTTCCTAACTTTCAACATTATGAAACCCCAAATTAATTTCAAACTAAGGAATTTTTTTAAATCAAAGGTCACATTCAATTTTCAATTTCGAATTGTTCATTCTACTTCAGTGTTCCCTTCTTTCCAAAAAATCCAATTAAGCTTTTTTTTCAAATTTAGAAGAGAATGCAATGGTTTGACTCATCTTGACCCTAATTTCCGTTTTTTTTCCCAATAATGGCTTTGTGCGAGCGAACCTCGACTCATTTGAAGAAAAGGCCATCTTCTTGAATAATGCACAGCTTTCCCACTATTATTCCGGTCCCTGTTGGTA</canonical>
            <polymorphic>AAATTTTCTTCAAATTTAGTTTTTCAAAGGTTTTTCAGTTCCTGTTTCAAGTTTTAGTACATTAATTGATGAAAAAATTGAACTCAATCAAGTGAAAGGGGGCGCCCTACATATTAGAGCATTCATTAAACTTTTTGAAGTGCTTCAATTATAGTCGACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAATTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATTTGCAGAAACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATAWTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTTTTTATAGAAAAAAATAGTTGAGTATTTTTTTTAATAATTTGATCCTAAAAATCCCATTATGAATTTCCTAACTTTCAACATTATGAAACCCCAAATTAATTTCAAACTAAGGAATTTTTTTAAATCAAAGGTCACATTCAATTTTCAATTTCGAATTGTTCATTCTACTTCAGTGTTCCCTTCTTTCCAAAAAATCCAATTAAGCTTTTTTTTCAAATTTAGAAGAGAATGCAATGGTTTGACTCATCTTGACCCTAATTTCCGTTTTTTTTCCCAATAATGGCTTTGTGCGAGCGAACCTCGACTCATTTGAAGAAAAGGCCATCTTCTTGAATAATGCACAGCTTTCCCACTATTATTCCGGTCCCTGTTGGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 272 226</canonical_bands>
                <polymorphic_bands>728 272</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAGTTTTTGTCCTTACGTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTAACCGAGAAAAACAGACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTT</canonical_amplicon>
		<polymorphic_amplicon>ACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATAWTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24950</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1612510</contig_pos>
        <strand>+</strand>
        <context>TTGCTCACAT[G/T]TATAACTAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACAT</left_flank>
        <right_flank>TATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAAAGGTTTTTCAGTTCCTGTTTCAAGTTTTAGTACATTAATTGATGAAAAAATTGAACTCAATCAAGTGAAAGGGGGCGCCCTACATATTAGAGCATTCATTAAACTTTTTGAAGTGCTTCAATTATAGTCGACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAATTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATTTGCAGAAACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTTTTTATAGAAAAAAATAGTTGAGTATTTTTTTTAATAATTTGATCCTAAAAATCCCATTATGAATTTCCTAACTTTCAACATTATGAAACCCCAAATTAATTTCAAACTAAGGAATTTTTTTAAATCAAAGGTCACATTCAATTTTCAATTTCGAATTGTTCATTCTACTTCAGTGTTCCCTTCTTTCCAAAAAATCCAATTAAGCTTTTTTTTCAAATTTAGAAGAGAATGCAATGGTTTGACTCATCTTGACCCTAATTTCCGTTTTTTTTCCCAATAATGGCTTTGTGCGAGCGAACCTCGACTCATTTGAAGAAAAGGCCATCTTCTTGAATAATGCACAGCTTTCCCACTATTATTCCGGTCCCTGTTGGTATATAATCACTTCGAGACACTGA</canonical>
            <polymorphic>TTCAAAGGTTTTTCAGTTCCTGTTTCAAGTTTTAGTACATTAATTGATGAAAAAATTGAACTCAATCAAGTGAAAGGGGGCGCCCTACATATTAGAGCATTCATTAAACTTTTTGAAGTGCTTCAATTATAGTCGACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAATTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATTTGCAGAAACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATKTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTTTTTATAGAAAAAAATAGTTGAGTATTTTTTTTAATAATTTGATCCTAAAAATCCCATTATGAATTTCCTAACTTTCAACATTATGAAACCCCAAATTAATTTCAAACTAAGGAATTTTTTTAAATCAAAGGTCACATTCAATTTTCAATTTCGAATTGTTCATTCTACTTCAGTGTTCCCTTCTTTCCAAAAAATCCAATTAAGCTTTTTTTTCAAATTTAGAAGAGAATGCAATGGTTTGACTCATCTTGACCCTAATTTCCGTTTTTTTTCCCAATAATGGCTTTGTGCGAGCGAACCTCGACTCATTTGAAGAAAAGGCCATCTTCTTGAATAATGCACAGCTTTCCCACTATTATTCCGGTCCCTGTTGGTATATAATCACTTCGAGACACTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAGTTTTTGTCCTTACGTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTAACCGAGAAAAACAGACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTT</canonical_amplicon>
		<polymorphic_amplicon>ACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATKTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24951</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1612523</contig_pos>
        <strand>+</strand>
        <context>TAACTAATTT[C/T]ACCAACAAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATAACTAATTT</left_flank>
        <right_flank>ACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTTCCTGTTTCAAGTTTTAGTACATTAATTGATGAAAAAATTGAACTCAATCAAGTGAAAGGGGGCGCCCTACATATTAGAGCATTCATTAAACTTTTTGAAGTGCTTCAATTATAGTCGACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAATTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATTTGCAGAAACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTTTTTATAGAAAAAAATAGTTGAGTATTTTTTTTAATAATTTGATCCTAAAAATCCCATTATGAATTTCCTAACTTTCAACATTATGAAACCCCAAATTAATTTCAAACTAAGGAATTTTTTTAAATCAAAGGTCACATTCAATTTTCAATTTCGAATTGTTCATTCTACTTCAGTGTTCCCTTCTTTCCAAAAAATCCAATTAAGCTTTTTTTTCAAATTTAGAAGAGAATGCAATGGTTTGACTCATCTTGACCCTAATTTCCGTTTTTTTTCCCAATAATGGCTTTGTGCGAGCGAACCTCGACTCATTTGAAGAAAAGGCCATCTTCTTGAATAATGCACAGCTTTCCCACTATTATTCCGGTCCCTGTTGGTATATAATCACTTCGAGACACTGAACAAAAAATACGT</canonical>
            <polymorphic>CAGTTCCTGTTTCAAGTTTTAGTACATTAATTGATGAAAAAATTGAACTCAATCAAGTGAAAGGGGGCGCCCTACATATTAGAGCATTCATTAAACTTTTTGAAGTGCTTCAATTATAGTCGACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAATTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATTTGCAGAAACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATAACTAATTTYACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTTTTTATAGAAAAAAATAGTTGAGTATTTTTTTTAATAATTTGATCCTAAAAATCCCATTATGAATTTCCTAACTTTCAACATTATGAAACCCCAAATTAATTTCAAACTAAGGAATTTTTTTAAATCAAAGGTCACATTCAATTTTCAATTTCGAATTGTTCATTCTACTTCAGTGTTCCCTTCTTTCCAAAAAATCCAATTAAGCTTTTTTTTCAAATTTAGAAGAGAATGCAATGGTTTGACTCATCTTGACCCTAATTTCCGTTTTTTTTCCCAATAATGGCTTTGTGCGAGCGAACCTCGACTCATTTGAAGAAAAGGCCATCTTCTTGAATAATGCACAGCTTTCCCACTATTATTCCGGTCCCTGTTGGTATATAATCACTTCGAGACACTGAACAAAAAATACGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>222 135 115 94 59 58 51 48 41 33 32 20 18 18 17 11 10 10 8</canonical_bands>
                <polymorphic_bands>240 135 115 94 59 58 51 48 41 33 32 20 18 17 11 10 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAGTTTTTGTCCTTACGTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTAACCGAGAAAAACAGACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTT</canonical_amplicon>
		<polymorphic_amplicon>ACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATAACTAATTTYACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24952</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1612562</contig_pos>
        <strand>+</strand>
        <context>AAAGATGAAA[C/T]AAAGGAACCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAA</left_flank>
        <right_flank>AAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTGAACTCAATCAAGTGAAAGGGGGCGCCCTACATATTAGAGCATTCATTAAACTTTTTGAAGTGCTTCAATTATAGTCGACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAATTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATTTGCAGAAACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTTTTTATAGAAAAAAATAGTTGAGTATTTTTTTTAATAATTTGATCCTAAAAATCCCATTATGAATTTCCTAACTTTCAACATTATGAAACCCCAAATTAATTTCAAACTAAGGAATTTTTTTAAATCAAAGGTCACATTCAATTTTCAATTTCGAATTGTTCATTCTACTTCAGTGTTCCCTTCTTTCCAAAAAATCCAATTAAGCTTTTTTTTCAAATTTAGAAGAGAATGCAATGGTTTGACTCATCTTGACCCTAATTTCCGTTTTTTTTCCCAATAATGGCTTTGTGCGAGCGAACCTCGACTCATTTGAAGAAAAGGCCATCTTCTTGAATAATGCACAGCTTTCCCACTATTATTCCGGTCCCTGTTGGTATATAATCACTTCGAGACACTGAACAAAAAATACGTGTAGCATACATACATACCCAAGCCGTCTCTCTCTCTCTC</canonical>
            <polymorphic>AAATTGAACTCAATCAAGTGAAAGGGGGCGCCCTACATATTAGAGCATTCATTAAACTTTTTGAAGTGCTTCAATTATAGTCGACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAATTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATTTGCAGAAACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAAYAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTTTTTATAGAAAAAAATAGTTGAGTATTTTTTTTAATAATTTGATCCTAAAAATCCCATTATGAATTTCCTAACTTTCAACATTATGAAACCCCAAATTAATTTCAAACTAAGGAATTTTTTTAAATCAAAGGTCACATTCAATTTTCAATTTCGAATTGTTCATTCTACTTCAGTGTTCCCTTCTTTCCAAAAAATCCAATTAAGCTTTTTTTTCAAATTTAGAAGAGAATGCAATGGTTTGACTCATCTTGACCCTAATTTCCGTTTTTTTTCCCAATAATGGCTTTGTGCGAGCGAACCTCGACTCATTTGAAGAAAAGGCCATCTTCTTGAATAATGCACAGCTTTCCCACTATTATTCCGGTCCCTGTTGGTATATAATCACTTCGAGACACTGAACAAAAAATACGTGTAGCATACATACATACCCAAGCCGTCTCTCTCTCTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTCTCCAGTTAGAGAAACCTG</pcr_primer_p1>
		<pcr_primer_p2>TAAAAAGTTAACCGAGAAAAACA</pcr_primer_p2>
		<pcr_amplicon_size>221</pcr_amplicon_size>
		<canonical_amplicon>TACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTTTTTA</canonical_amplicon>
		<polymorphic_amplicon>TACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAAYAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24953</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1612586</contig_pos>
        <strand>+</strand>
        <context>ATTTTTTAAC[C/T]TTGAGTCTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAAC</left_flank>
        <right_flank>TTGAGTCTGTTTTTCTCGGTTAACTTTTTATAGAAAAAAATAGTTGAGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGGCGCCCTACATATTAGAGCATTCATTAAACTTTTTGAAGTGCTTCAATTATAGTCGACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAATTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATTTGCAGAAACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTTTTTATAGAAAAAAATAGTTGAGTATTTTTTTTAATAATTTGATCCTAAAAATCCCATTATGAATTTCCTAACTTTCAACATTATGAAACCCCAAATTAATTTCAAACTAAGGAATTTTTTTAAATCAAAGGTCACATTCAATTTTCAATTTCGAATTGTTCATTCTACTTCAGTGTTCCCTTCTTTCCAAAAAATCCAATTAAGCTTTTTTTTCAAATTTAGAAGAGAATGCAATGGTTTGACTCATCTTGACCCTAATTTCCGTTTTTTTTCCCAATAATGGCTTTGTGCGAGCGAACCTCGACTCATTTGAAGAAAAGGCCATCTTCTTGAATAATGCACAGCTTTCCCACTATTATTCCGGTCCCTGTTGGTATATAATCACTTCGAGACACTGAACAAAAAATACGTGTAGCATACATACATACCCAAGCCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC</canonical>
            <polymorphic>GGGGCGCCCTACATATTAGAGCATTCATTAAACTTTTTGAAGTGCTTCAATTATAGTCGACACTTACTCGGCAAGTCCAAGGAATGCTCTATCCACGTTTTGCCCGGTCTTGGCACTGGTCTCCATGAATGGAATTCCGTTCTCCTGGAATAATTTGTATTATACAGATTAAATATTTTCATTTAATTTTTTTCTTATTTCAAAGCTCACAGATGAGCACTATGAGTATTTATGCCTGAACATTGGAAACGGATATTGAAACTAGATATTTGCAGAAACAAGTTTTTGTCCTTACGTTTTTTGTAATTTTACTCTCCAGTTAGAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACYTTGAGTCTGTTTTTCTCGGTTAACTTTTTATAGAAAAAAATAGTTGAGTATTTTTTTTAATAATTTGATCCTAAAAATCCCATTATGAATTTCCTAACTTTCAACATTATGAAACCCCAAATTAATTTCAAACTAAGGAATTTTTTTAAATCAAAGGTCACATTCAATTTTCAATTTCGAATTGTTCATTCTACTTCAGTGTTCCCTTCTTTCCAAAAAATCCAATTAAGCTTTTTTTTCAAATTTAGAAGAGAATGCAATGGTTTGACTCATCTTGACCCTAATTTCCGTTTTTTTTCCCAATAATGGCTTTGTGCGAGCGAACCTCGACTCATTTGAAGAAAAGGCCATCTTCTTGAATAATGCACAGCTTTCCCACTATTATTCCGGTCCCTGTTGGTATATAATCACTTCGAGACACTGAACAAAAAATACGTGTAGCATACATACATACCCAAGCCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAAACCTGATACTGACAATAAA</pcr_primer_p1>
		<pcr_primer_p2>TGGGATTTTTAGGATCAAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>GAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACCTTGAGTCTGTTTTTCTCGGTTAACTTTTTATAGAAAAAAATAGTTGAGTATTTTTTTTAATAATTTGATCCTAAAAATCCCA</canonical_amplicon>
		<polymorphic_amplicon>GAGAAACCTGATACTGACAATAAACCGAAACACAGAAAAAAGTTTCTGTAGTTTTTCTTTAAAAAAGATGAAATCAATATTTGATTAGTGATTGCTCACATTTATAACTAATTTCACCAACAAGCGGTTGGGAAAACATCGCAAAAGATGAAATAAAGGAACCCGTAATTTTTTAACYTTGAGTCTGTTTTTCTCGGTTAACTTTTTATAGAAAAAAATAGTTGAGTATTTTTTTTAATAATTTGATCCTAAAAATCCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24954</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1624456</contig_pos>
        <strand>+</strand>
        <context>GTGTGATTTA[C/G]ATACGAAGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AACACACAAAGTGTGTGGGGTACATACAAAAAGGTTATTGGTGTGATTTA</left_flank>
        <right_flank>ATACGAAGATGGGACAGTTTCAAGAAGGCGCATTGACGATCCTTCTCTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAATGTGCCTCAATGTGTTTTTCTGTTCGCGATCTTCCAAAATTTTCGATTTTGTCAGAAACATGTGTGATAAAAACCGGGTCCCCTCCAGATGCAATTTTGCATCTTCTCTCTCATTTTCATTTTTATTTTCTTTTCATTTTCCCTCCGAAGCATTGGTCACCCAGACATTTACATTGTTGCCACCTGCCACCCAAAACCTGTTAGAATATTCTTTGGACTGGCCAATCAACACTTTCACACTTGCCGTTTGTGTATGTTTATCCGTAAAATCATCACTACCATCAACACTTTCAATTATTTTGTTTTATTTTCTTCATTTTTTCAAACAGTAGTGTGTACATCAAAAAAAGGGTAAAAATAGAAACAGTGTATGTTTTTAGTTGTTTTCGATTAGAAAAAAGGGTACAGTACAAATGTTCTGAAACTAGATCATAAATTAATTACAAACACACAAAGTGTGTGGGGTACATACAAAAAGGTTATTGGTGTGATTTAGATACGAAGATGGGACAGTTTCAAGAAGGCGCATTGACGATCCTTCTCTTCATTTATCAGCTTCTCGCAATTCAGTTGGATGTATTCATCGATGTTTCTGGAAGACTAAATAACCAAGGGATTTTTGAGATACTACAACTACAACTTACGGGTTTGACATTTTTTCGGTTTTTGGGAATCCAAACTTTAAGTGTGTGGACTCATCGTGGATACGGATGTTCACTTTTGGTTGCTCCATTAGCTTTGGCTCAGCTGGACGGAAAGTGGCGGAGCTGATTCTGAAAATATTACATTTTTTATATGAATCTAGATAAATATCCTGGACTCACGCTTCCCGAGTCATGAACTGGTTGAAAACAGCAGACTGAGCGACTCTGACAAGTTTTGGAGCTGACGACATGTTGTGAAGTTTTTGAAATTGAATATATCAGTTGACTGATGAGCCTTTAGTAGCCGATAGCCGGCTTTTATACACGATCCGCAAGGCGGGAGGCGGGGTGA</canonical>
            <polymorphic>TGAATGTGCCTCAATGTGTTTTTCTGTTCGCGATCTTCCAAAATTTTCGATTTTGTCAGAAACATGTGTGATAAAAACCGGGTCCCCTCCAGATGCAATTTTGCATCTTCTCTCTCATTTTCATTTTTATTTTCTTTTCATTTTCCCTCCGAAGCATTGGTCACCCAGACATTTACATTGTTGCCACCTGCCACCCAAAACCTGTTAGAATATTCTTTGGACTGGCCAATCAACACTTTCACACTTGCCGTTTGTGTATGTTTATCCGTAAAATCATCACTACCATCAACACTTTCAATTATTTTGTTTTATTTTCTTCATTTTTTCAAACAGTAGTGTGTACATCAAAAAAAGGGTAAAAATAGAAACAGTGTATGTTTTTAGTTGTTTTCGATTAGAAAAAAGGGTACAGTACAAATGTTCTGAAACTAGATCATAAATTAATTACAAACACACAAAGTGTGTGGGGTACATACAAAAAGGTTATTGGTGTGATTTASATACGAAGATGGGACAGTTTCAAGAAGGCGCATTGACGATCCTTCTCTTCATTTATCAGCTTCTCGCAATTCAGTTGGATGTATTCATCGATGTTTCTGGAAGACTAAATAACCAAGGGATTTTTGAGATACTACAACTACAACTTACGGGTTTGACATTTTTTCGGTTTTTGGGAATCCAAACTTTAAGTGTGTGGACTCATCGTGGATACGGATGTTCACTTTTGGTTGCTCCATTAGCTTTGGCTCAGCTGGACGGAAAGTGGCGGAGCTGATTCTGAAAATATTACATTTTTTATATGAATCTAGATAAATATCCTGGACTCACGCTTCCCGAGTCATGAACTGGTTGAAAACAGCAGACTGAGCGACTCTGACAAGTTTTGGAGCTGACGACATGTTGTGAAGTTTTTGAAATTGAATATATCAGTTGACTGATGAGCCTTTAGTAGCCGATAGCCGGCTTTTATACACGATCCGCAAGGCGGGAGGCGGGGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTTTAGTTGTTTTCGATTAGA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATCCCTTGGTTATTTAGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTTTTTAGTTGTTTTCGATTAGAAAAAAGGGTACAGTACAAATGTTCTGAAACTAGATCATAAATTAATTACAAACACACAAAGTGTGTGGGGTACATACAAAAAGGTTATTGGTGTGATTTAGATACGAAGATGGGACAGTTTCAAGAAGGCGCATTGACGATCCTTCTCTTCATTTATCAGCTTCTCGCAATTCAGTTGGATGTATTCATCGATGTTTCTGGAAGACTAAATAACCAAGGGATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TGTTTTTAGTTGTTTTCGATTAGAAAAAAGGGTACAGTACAAATGTTCTGAAACTAGATCATAAATTAATTACAAACACACAAAGTGTGTGGGGTACATACAAAAAGGTTATTGGTGTGATTTASATACGAAGATGGGACAGTTTCAAGAAGGCGCATTGACGATCCTTCTCTTCATTTATCAGCTTCTCGCAATTCAGTTGGATGTATTCATCGATGTTTCTGGAAGACTAAATAACCAAGGGATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24955</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1626860</contig_pos>
        <strand></strand>
        <context>TTAGATTCGC[T/A]TTGAATCATG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGC</left_flank>
        <right_flank>TTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAGGTCAGCGTCTATCAACGGAAGTTTGACTTATAGCATGGAAATTGTTGAGCTGGTGTTTCCTAAAATAGGCCAACTCCGTCATTTCCTTCTTATGCACACAAAAGGATGTTTAGAGAAAGTTCCGATACAATGACTTTTGACCAAAACAATGCAAGTCGTGAACACAAATTGTTTTTGTTTTTCTCCATCACAAAAGGTTTTGAGTATAGTTAACTGTTCCCCGTTCATCTTCCCAGGTTTGAAATGGCTTGTTTGAAAACACTCGATCACAAGTGCATAGGTATAAACAAGGAAAACCGGTTCAGTTTTTTGCAAACCACATGTACTTTTCAAATTGATAAGATTGTATTGTCTGAGAAGATTTGGGAGTTGTTTACCAGGAATTCTTAAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCG</canonical>
            <polymorphic>ACAAGGTCAGCGTCTATCAACGGAAGTTTGACTTATAGCATGGAAATTGTTGAGCTGGTGTTTCCTAAAATAGGCCAACTCCGTCATTTCCTTCTTATGCACACAAAAGGATGTTTAGAGAAAGTTCCGATACAATGACTTTTGACCAAAACAATGCAAGTCGTGAACACAAATTGTTTTTGTTTTTCTCCATCACAAAAGGTTTTGAGTATAGTTAACTGTTCCCCGTTCATCTTCCCAGGTTTGAAATGGCTTGTTTGAAAACACTCGATCACAAGTGCATAGGTATAAACAAGGAAAACCGGTTCAGTTTTTTGCAAACCACATGTACTTTTCAAATTGATAAGATTGTATTGTCTGAGAAGATTTGGGAGTTGTTTACCAGGAATTCTTAAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCWTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAGATTTGGGAGTTGTTTAC</pcr_primer_p1>
		<pcr_primer_p2>GATCTCATTGGTAAGCAACAATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAGAAGATTTGGGAGTTGTTTACCAGGAATTCTTAAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATC</canonical_amplicon>
		<polymorphic_amplicon>GAGAAGATTTGGGAGTTGTTTACCAGGAATTCTTAAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCWTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24956</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1626937</contig_pos>
        <strand></strand>
        <context>ATAATTGTAT[T/C]GATTTTATTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTAT</left_flank>
        <right_flank>GATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCCGTCATTTCCTTCTTATGCACACAAAAGGATGTTTAGAGAAAGTTCCGATACAATGACTTTTGACCAAAACAATGCAAGTCGTGAACACAAATTGTTTTTGTTTTTCTCCATCACAAAAGGTTTTGAGTATAGTTAACTGTTCCCCGTTCATCTTCCCAGGTTTGAAATGGCTTGTTTGAAAACACTCGATCACAAGTGCATAGGTATAAACAAGGAAAACCGGTTCAGTTTTTTGCAAACCACATGTACTTTTCAAATTGATAAGATTGTATTGTCTGAGAAGATTTGGGAGTTGTTTACCAGGAATTCTTAAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCGAAGCAAAAGCTCCTGCTCACTTCGATATTCCGACGAATCCATTCATCTTCTCTTTTTCAGATGTCCTCACTTTAATT</canonical>
            <polymorphic>ACTCCGTCATTTCCTTCTTATGCACACAAAAGGATGTTTAGAGAAAGTTCCGATACAATGACTTTTGACCAAAACAATGCAAGTCGTGAACACAAATTGTTTTTGTTTTTCTCCATCACAAAAGGTTTTGAGTATAGTTAACTGTTCCCCGTTCATCTTCCCAGGTTTGAAATGGCTTGTTTGAAAACACTCGATCACAAGTGCATAGGTATAAACAAGGAAAACCGGTTCAGTTTTTTGCAAACCACATGTACTTTTCAAATTGATAAGATTGTATTGTCTGAGAAGATTTGGGAGTTGTTTACCAGGAATTCTTAAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATYGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCGAAGCAAAAGCTCCTGCTCACTTCGATATTCCGACGAATCCATTCATCTTCTCTTTTTCAGATGTCCTCACTTTAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGTTTGACGAGTAATTTGAA</pcr_primer_p1>
		<pcr_primer_p2>CGTGTCTTGTGTGATGATGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACG</canonical_amplicon>
		<polymorphic_amplicon>AAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATYGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24957</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1626967</contig_pos>
        <strand></strand>
        <context>AATGAGATCT[C/G]TCAGATGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCT</left_flank>
        <right_flank>TCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGATGTTTAGAGAAAGTTCCGATACAATGACTTTTGACCAAAACAATGCAAGTCGTGAACACAAATTGTTTTTGTTTTTCTCCATCACAAAAGGTTTTGAGTATAGTTAACTGTTCCCCGTTCATCTTCCCAGGTTTGAAATGGCTTGTTTGAAAACACTCGATCACAAGTGCATAGGTATAAACAAGGAAAACCGGTTCAGTTTTTTGCAAACCACATGTACTTTTCAAATTGATAAGATTGTATTGTCTGAGAAGATTTGGGAGTTGTTTACCAGGAATTCTTAAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCGAAGCAAAAGCTCCTGCTCACTTCGATATTCCGACGAATCCATTCATCTTCTCTTTTTCAGATGTCCTCACTTTAATTTCGAATTCCTTACTTCAAACCAATTTGTGA</canonical>
            <polymorphic>AGGATGTTTAGAGAAAGTTCCGATACAATGACTTTTGACCAAAACAATGCAAGTCGTGAACACAAATTGTTTTTGTTTTTCTCCATCACAAAAGGTTTTGAGTATAGTTAACTGTTCCCCGTTCATCTTCCCAGGTTTGAAATGGCTTGTTTGAAAACACTCGATCACAAGTGCATAGGTATAAACAAGGAAAACCGGTTCAGTTTTTTGCAAACCACATGTACTTTTCAAATTGATAAGATTGTATTGTCTGAGAAGATTTGGGAGTTGTTTACCAGGAATTCTTAAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTSTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCGAAGCAAAAGCTCCTGCTCACTTCGATATTCCGACGAATCCATTCATCTTCTCTTTTTCAGATGTCCTCACTTTAATTTCGAATTCCTTACTTCAAACCAATTTGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>381 251 249 119</canonical_bands>
                <polymorphic_bands>630 251 119</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATGATTTGTGTTTTGAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>AAGAACATGAAGTTGGGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTT</canonical_amplicon>
		<polymorphic_amplicon>AGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTSTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24958</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1627022</contig_pos>
        <strand></strand>
        <context>AAGTTGGCAC[A/T]GAAACCCAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCAC</left_flank>
        <right_flank>GAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGAACACAAATTGTTTTTGTTTTTCTCCATCACAAAAGGTTTTGAGTATAGTTAACTGTTCCCCGTTCATCTTCCCAGGTTTGAAATGGCTTGTTTGAAAACACTCGATCACAAGTGCATAGGTATAAACAAGGAAAACCGGTTCAGTTTTTTGCAAACCACATGTACTTTTCAAATTGATAAGATTGTATTGTCTGAGAAGATTTGGGAGTTGTTTACCAGGAATTCTTAAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCGAAGCAAAAGCTCCTGCTCACTTCGATATTCCGACGAATCCATTCATCTTCTCTTTTTCAGATGTCCTCACTTTAATTTCGAATTCCTTACTTCAAACCAATTTGTGAAAGTCCTATATTCGAAACCAAATTTTTGATACTACCACCTAAAAGGTTTTTCTTT</canonical>
            <polymorphic>GTGAACACAAATTGTTTTTGTTTTTCTCCATCACAAAAGGTTTTGAGTATAGTTAACTGTTCCCCGTTCATCTTCCCAGGTTTGAAATGGCTTGTTTGAAAACACTCGATCACAAGTGCATAGGTATAAACAAGGAAAACCGGTTCAGTTTTTTGCAAACCACATGTACTTTTCAAATTGATAAGATTGTATTGTCTGAGAAGATTTGGGAGTTGTTTACCAGGAATTCTTAAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACWGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCGAAGCAAAAGCTCCTGCTCACTTCGATATTCCGACGAATCCATTCATCTTCTCTTTTTCAGATGTCCTCACTTTAATTTCGAATTCCTTACTTCAAACCAATTTGTGAAAGTCCTATATTCGAAACCAAATTTTTGATACTACCACCTAAAAGGTTTTTCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTATTGTTGCTTACCAATG</pcr_primer_p1>
		<pcr_primer_p2>CAAGTACATCGTCCACATGA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTG</canonical_amplicon>
		<polymorphic_amplicon>GATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACWGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24959</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1627120</contig_pos>
        <strand></strand>
        <context>GCTCATGATA[A/G]ATGGAACKGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATA</left_flank>
        <right_flank>ATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACACTCGATCACAAGTGCATAGGTATAAACAAGGAAAACCGGTTCAGTTTTTTGCAAACCACATGTACTTTTCAAATTGATAAGATTGTATTGTCTGAGAAGATTTGGGAGTTGTTTACCAGGAATTCTTAAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCGAAGCAAAAGCTCCTGCTCACTTCGATATTCCGACGAATCCATTCATCTTCTCTTTTTCAGATGTCCTCACTTTAATTTCGAATTCCTTACTTCAAACCAATTTGTGAAAGTCCTATATTCGAAACCAAATTTTTGATACTACCACCTAAAAGGTTTTTCTTTTTAGAACAGAAACGACAAAGAAAATTAGATGAATCACACTAAAGTAGGAGAAAAAAGAATAAAATTTGATTTCAAAAAGAAATTCTGATGCACGCAAC</canonical>
            <polymorphic>AAAACACTCGATCACAAGTGCATAGGTATAAACAAGGAAAACCGGTTCAGTTTTTTGCAAACCACATGTACTTTTCAAATTGATAAGATTGTATTGTCTGAGAAGATTTGGGAGTTGTTTACCAGGAATTCTTAAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATARATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCGAAGCAAAAGCTCCTGCTCACTTCGATATTCCGACGAATCCATTCATCTTCTCTTTTTCAGATGTCCTCACTTTAATTTCGAATTCCTTACTTCAAACCAATTTGTGAAAGTCCTATATTCGAAACCAAATTTTTGATACTACCACCTAAAAGGTTTTTCTTTTTAGAACAGAAACGACAAAGAAAATTAGATGAATCACACTAAAGTAGGAGAAAAAAGAATAAAATTTGATTTCAAAAAGAAATTCTGATGCACGCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTATTGTTGCTTACCAATG</pcr_primer_p1>
		<pcr_primer_p2>CAAGTACATCGTCCACATGA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTG</canonical_amplicon>
		<polymorphic_amplicon>GATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATARATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24960</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1627128</contig_pos>
        <strand></strand>
        <context>TARATGGAAC[G/T]GATRAGTCGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAAC</left_flank>
        <right_flank>GATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATCACAAGTGCATAGGTATAAACAAGGAAAACCGGTTCAGTTTTTTGCAAACCACATGTACTTTTCAAATTGATAAGATTGTATTGTCTGAGAAGATTTGGGAGTTGTTTACCAGGAATTCTTAAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCGAAGCAAAAGCTCCTGCTCACTTCGATATTCCGACGAATCCATTCATCTTCTCTTTTTCAGATGTCCTCACTTTAATTTCGAATTCCTTACTTCAAACCAATTTGTGAAAGTCCTATATTCGAAACCAAATTTTTGATACTACCACCTAAAAGGTTTTTCTTTTTAGAACAGAAACGACAAAGAAAATTAGATGAATCACACTAAAGTAGGAGAAAAAAGAATAAAATTTGATTTCAAAAAGAAATTCTGATGCACGCAACGCGAAGCA</canonical>
            <polymorphic>CGATCACAAGTGCATAGGTATAAACAAGGAAAACCGGTTCAGTTTTTTGCAAACCACATGTACTTTTCAAATTGATAAGATTGTATTGTCTGAGAAGATTTGGGAGTTGTTTACCAGGAATTCTTAAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACKGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCGAAGCAAAAGCTCCTGCTCACTTCGATATTCCGACGAATCCATTCATCTTCTCTTTTTCAGATGTCCTCACTTTAATTTCGAATTCCTTACTTCAAACCAATTTGTGAAAGTCCTATATTCGAAACCAAATTTTTGATACTACCACCTAAAAGGTTTTTCTTTTTAGAACAGAAACGACAAAGAAAATTAGATGAATCACACTAAAGTAGGAGAAAAAAGAATAAAATTTGATTTCAAAAAGAAATTCTGATGCACGCAACGCGAAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTATTGTTGCTTACCAATG</pcr_primer_p1>
		<pcr_primer_p2>CAAGTACATCGTCCACATGA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTG</canonical_amplicon>
		<polymorphic_amplicon>GATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACKGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24961</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1627132</contig_pos>
        <strand></strand>
        <context>TGGAACKGAT[A/G]AGTCGACGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGAT</left_flank>
        <right_flank>AGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACAAGTGCATAGGTATAAACAAGGAAAACCGGTTCAGTTTTTTGCAAACCACATGTACTTTTCAAATTGATAAGATTGTATTGTCTGAGAAGATTTGGGAGTTGTTTACCAGGAATTCTTAAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCGAAGCAAAAGCTCCTGCTCACTTCGATATTCCGACGAATCCATTCATCTTCTCTTTTTCAGATGTCCTCACTTTAATTTCGAATTCCTTACTTCAAACCAATTTGTGAAAGTCCTATATTCGAAACCAAATTTTTGATACTACCACCTAAAAGGTTTTTCTTTTTAGAACAGAAACGACAAAGAAAATTAGATGAATCACACTAAAGTAGGAGAAAAAAGAATAAAATTTGATTTCAAAAAGAAATTCTGATGCACGCAACGCGAAGCACGCG</canonical>
            <polymorphic>CACAAGTGCATAGGTATAAACAAGGAAAACCGGTTCAGTTTTTTGCAAACCACATGTACTTTTCAAATTGATAAGATTGTATTGTCTGAGAAGATTTGGGAGTTGTTTACCAGGAATTCTTAAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATRAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCGAAGCAAAAGCTCCTGCTCACTTCGATATTCCGACGAATCCATTCATCTTCTCTTTTTCAGATGTCCTCACTTTAATTTCGAATTCCTTACTTCAAACCAATTTGTGAAAGTCCTATATTCGAAACCAAATTTTTGATACTACCACCTAAAAGGTTTTTCTTTTTAGAACAGAAACGACAAAGAAAATTAGATGAATCACACTAAAGTAGGAGAAAAAAGAATAAAATTTGATTTCAAAAAGAAATTCTGATGCACGCAACGCGAAGCACGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACCCAACTTCATGTTCTT</pcr_primer_p1>
		<pcr_primer_p2>TCTTGATCAACGATCCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGA</canonical_amplicon>
		<polymorphic_amplicon>GAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATRAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24962</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1627146</contig_pos>
        <strand></strand>
        <context>CGACGAACTA[C/T]YATAGAAMGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTA</left_flank>
        <right_flank>TATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATAAACAAGGAAAACCGGTTCAGTTTTTTGCAAACCACATGTACTTTTCAAATTGATAAGATTGTATTGTCTGAGAAGATTTGGGAGTTGTTTACCAGGAATTCTTAAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCGAAGCAAAAGCTCCTGCTCACTTCGATATTCCGACGAATCCATTCATCTTCTCTTTTTCAGATGTCCTCACTTTAATTTCGAATTCCTTACTTCAAACCAATTTGTGAAAGTCCTATATTCGAAACCAAATTTTTGATACTACCACCTAAAAGGTTTTTCTTTTTAGAACAGAAACGACAAAGAAAATTAGATGAATCACACTAAAGTAGGAGAAAAAAGAATAAAATTTGATTTCAAAAAGAAATTCTGATGCACGCAACGCGAAGCACGCGTCGCCTTTAAAATT</canonical>
            <polymorphic>TATAAACAAGGAAAACCGGTTCAGTTTTTTGCAAACCACATGTACTTTTCAAATTGATAAGATTGTATTGTCTGAGAAGATTTGGGAGTTGTTTACCAGGAATTCTTAAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTAYTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCGAAGCAAAAGCTCCTGCTCACTTCGATATTCCGACGAATCCATTCATCTTCTCTTTTTCAGATGTCCTCACTTTAATTTCGAATTCCTTACTTCAAACCAATTTGTGAAAGTCCTATATTCGAAACCAAATTTTTGATACTACCACCTAAAAGGTTTTTCTTTTTAGAACAGAAACGACAAAGAAAATTAGATGAATCACACTAAAGTAGGAGAAAAAAGAATAAAATTTGATTTCAAAAAGAAATTCTGATGCACGCAACGCGAAGCACGCGTCGCCTTTAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAACCCAACTTCATGTTCTT</pcr_primer_p1>
		<pcr_primer_p2>TCTTGATCAACGATCCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGA</canonical_amplicon>
		<polymorphic_amplicon>GAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTAYTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24963</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1627147</contig_pos>
        <strand></strand>
        <context>GACGAACTAY[T/C]ATAGAAMGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTAC</left_flank>
        <right_flank>ATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAACAAGGAAAACCGGTTCAGTTTTTTGCAAACCACATGTACTTTTCAAATTGATAAGATTGTATTGTCTGAGAAGATTTGGGAGTTGTTTACCAGGAATTCTTAAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCGAAGCAAAAGCTCCTGCTCACTTCGATATTCCGACGAATCCATTCATCTTCTCTTTTTCAGATGTCCTCACTTTAATTTCGAATTCCTTACTTCAAACCAATTTGTGAAAGTCCTATATTCGAAACCAAATTTTTGATACTACCACCTAAAAGGTTTTTCTTTTTAGAACAGAAACGACAAAGAAAATTAGATGAATCACACTAAAGTAGGAGAAAAAAGAATAAAATTTGATTTCAAAAAGAAATTCTGATGCACGCAACGCGAAGCACGCGTCGCCTTTAAAATTC</canonical>
            <polymorphic>ATAAACAAGGAAAACCGGTTCAGTTTTTTGCAAACCACATGTACTTTTCAAATTGATAAGATTGTATTGTCTGAGAAGATTTGGGAGTTGTTTACCAGGAATTCTTAAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACYATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCGAAGCAAAAGCTCCTGCTCACTTCGATATTCCGACGAATCCATTCATCTTCTCTTTTTCAGATGTCCTCACTTTAATTTCGAATTCCTTACTTCAAACCAATTTGTGAAAGTCCTATATTCGAAACCAAATTTTTGATACTACCACCTAAAAGGTTTTTCTTTTTAGAACAGAAACGACAAAGAAAATTAGATGAATCACACTAAAGTAGGAGAAAAAAGAATAAAATTTGATTTCAAAAAGAAATTCTGATGCACGCAACGCGAAGCACGCGTCGCCTTTAAAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAACCCAACTTCATGTTCTT</pcr_primer_p1>
		<pcr_primer_p2>TCTTGATCAACGATCCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGA</canonical_amplicon>
		<polymorphic_amplicon>GAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACYATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24964</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1627154</contig_pos>
        <strand></strand>
        <context>TAYYATAGAA[A/C]GATCKGGTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAA</left_flank>
        <right_flank>GATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAAAACCGGTTCAGTTTTTTGCAAACCACATGTACTTTTCAAATTGATAAGATTGTATTGTCTGAGAAGATTTGGGAGTTGTTTACCAGGAATTCTTAAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCGAAGCAAAAGCTCCTGCTCACTTCGATATTCCGACGAATCCATTCATCTTCTCTTTTTCAGATGTCCTCACTTTAATTTCGAATTCCTTACTTCAAACCAATTTGTGAAAGTCCTATATTCGAAACCAAATTTTTGATACTACCACCTAAAAGGTTTTTCTTTTTAGAACAGAAACGACAAAGAAAATTAGATGAATCACACTAAAGTAGGAGAAAAAAGAATAAAATTTGATTTCAAAAAGAAATTCTGATGCACGCAACGCGAAGCACGCGTCGCCTTTAAAATTCGCCCAAA</canonical>
            <polymorphic>AGGAAAACCGGTTCAGTTTTTTGCAAACCACATGTACTTTTCAAATTGATAAGATTGTATTGTCTGAGAAGATTTGGGAGTTGTTTACCAGGAATTCTTAAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAMGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCGAAGCAAAAGCTCCTGCTCACTTCGATATTCCGACGAATCCATTCATCTTCTCTTTTTCAGATGTCCTCACTTTAATTTCGAATTCCTTACTTCAAACCAATTTGTGAAAGTCCTATATTCGAAACCAAATTTTTGATACTACCACCTAAAAGGTTTTTCTTTTTAGAACAGAAACGACAAAGAAAATTAGATGAATCACACTAAAGTAGGAGAAAAAAGAATAAAATTTGATTTCAAAAAGAAATTCTGATGCACGCAACGCGAAGCACGCGTCGCCTTTAAAATTCGCCCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>500 307 193</canonical_bands>
                <polymorphic_bands>693 307</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>319 307 193 150 15 8 8</canonical_bands>
                <polymorphic_bands>343 319 307 15 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAACCCAACTTCATGTTCTT</pcr_primer_p1>
		<pcr_primer_p2>TCTTGATCAACGATCCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGA</canonical_amplicon>
		<polymorphic_amplicon>GAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAMGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24965</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1627159</contig_pos>
        <strand></strand>
        <context>TAGAAMGATC[T/G]GGTTCATGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATC</left_flank>
        <right_flank>GGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCGGTTCAGTTTTTTGCAAACCACATGTACTTTTCAAATTGATAAGATTGTATTGTCTGAGAAGATTTGGGAGTTGTTTACCAGGAATTCTTAAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCGAAGCAAAAGCTCCTGCTCACTTCGATATTCCGACGAATCCATTCATCTTCTCTTTTTCAGATGTCCTCACTTTAATTTCGAATTCCTTACTTCAAACCAATTTGTGAAAGTCCTATATTCGAAACCAAATTTTTGATACTACCACCTAAAAGGTTTTTCTTTTTAGAACAGAAACGACAAAGAAAATTAGATGAATCACACTAAAGTAGGAGAAAAAAGAATAAAATTTGATTTCAAAAAGAAATTCTGATGCACGCAACGCGAAGCACGCGTCGCCTTTAAAATTCGCCCAAACATCG</canonical>
            <polymorphic>AACCGGTTCAGTTTTTTGCAAACCACATGTACTTTTCAAATTGATAAGATTGTATTGTCTGAGAAGATTTGGGAGTTGTTTACCAGGAATTCTTAAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCKGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCGAAGCAAAAGCTCCTGCTCACTTCGATATTCCGACGAATCCATTCATCTTCTCTTTTTCAGATGTCCTCACTTTAATTTCGAATTCCTTACTTCAAACCAATTTGTGAAAGTCCTATATTCGAAACCAAATTTTTGATACTACCACCTAAAAGGTTTTTCTTTTTAGAACAGAAACGACAAAGAAAATTAGATGAATCACACTAAAGTAGGAGAAAAAAGAATAAAATTTGATTTCAAAAAGAAATTCTGATGCACGCAACGCGAAGCACGCGTCGCCTTTAAAATTCGCCCAAACATCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>505 302 193</canonical_bands>
                <polymorphic_bands>698 302</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>324 302 193 150 15 8 8</canonical_bands>
                <polymorphic_bands>343 324 302 15 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAACCCAACTTCATGTTCTT</pcr_primer_p1>
		<pcr_primer_p2>TCTTGATCAACGATCCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGA</canonical_amplicon>
		<polymorphic_amplicon>GAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCKGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24966</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1627190</contig_pos>
        <strand></strand>
        <context>TTGCCGTCGG[C/T]GCCGTTTAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGG</left_flank>
        <right_flank>GCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTCAAATTGATAAGATTGTATTGTCTGAGAAGATTTGGGAGTTGTTTACCAGGAATTCTTAAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCGAAGCAAAAGCTCCTGCTCACTTCGATATTCCGACGAATCCATTCATCTTCTCTTTTTCAGATGTCCTCACTTTAATTTCGAATTCCTTACTTCAAACCAATTTGTGAAAGTCCTATATTCGAAACCAAATTTTTGATACTACCACCTAAAAGGTTTTTCTTTTTAGAACAGAAACGACAAAGAAAATTAGATGAATCACACTAAAGTAGGAGAAAAAAGAATAAAATTTGATTTCAAAAAGAAATTCTGATGCACGCAACGCGAAGCACGCGTCGCCTTTAAAATTCGCCCAAACATCGCCCAAGATTCGCCGAGGTGATGGTGGACGGC</canonical>
            <polymorphic>CTTTTCAAATTGATAAGATTGTATTGTCTGAGAAGATTTGGGAGTTGTTTACCAGGAATTCTTAAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGYGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCGAAGCAAAAGCTCCTGCTCACTTCGATATTCCGACGAATCCATTCATCTTCTCTTTTTCAGATGTCCTCACTTTAATTTCGAATTCCTTACTTCAAACCAATTTGTGAAAGTCCTATATTCGAAACCAAATTTTTGATACTACCACCTAAAAGGTTTTTCTTTTTAGAACAGAAACGACAAAGAAAATTAGATGAATCACACTAAAGTAGGAGAAAAAAGAATAAAATTTGATTTCAAAAAGAAATTCTGATGCACGCAACGCGAAGCACGCGTCGCCTTTAAAATTCGCCCAAACATCGCCCAAGATTCGCCGAGGTGATGGTGGACGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCGCC</site>
                <isoschizomers>
                    <enzyme>BbeI</enzyme>
                    <enzyme>EgeI</enzyme>
                    <enzyme>EheI</enzyme>
                    <enzyme>KasI</enzyme>
                    <enzyme>Mly113I</enzyme>
                    <enzyme>NarI</enzyme>
                    <enzyme>SfoI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAACCCAACTTCATGTTCTT</pcr_primer_p1>
		<pcr_primer_p2>TCTTGATCAACGATCCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGA</canonical_amplicon>
		<polymorphic_amplicon>GAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGYGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24967</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1627245</contig_pos>
        <strand></strand>
        <context>CGAATGAGAG[A/T]CYTTCTYGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAG</left_flank>
        <right_flank>CCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTCTTAAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCGAAGCAAAAGCTCCTGCTCACTTCGATATTCCGACGAATCCATTCATCTTCTCTTTTTCAGATGTCCTCACTTTAATTTCGAATTCCTTACTTCAAACCAATTTGTGAAAGTCCTATATTCGAAACCAAATTTTTGATACTACCACCTAAAAGGTTTTTCTTTTTAGAACAGAAACGACAAAGAAAATTAGATGAATCACACTAAAGTAGGAGAAAAAAGAATAAAATTTGATTTCAAAAAGAAATTCTGATGCACGCAACGCGAAGCACGCGTCGCCTTTAAAATTCGCCCAAACATCGCCCAAGATTCGCCGAGGTGATGGTGGACGGCGCAGCTGCCACAGATCTAGGAGCTTCCGGTTAAAAGCCGCCCAAATAACGCTCTA</canonical>
            <polymorphic>GAATTCTTAAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGWCCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCGAAGCAAAAGCTCCTGCTCACTTCGATATTCCGACGAATCCATTCATCTTCTCTTTTTCAGATGTCCTCACTTTAATTTCGAATTCCTTACTTCAAACCAATTTGTGAAAGTCCTATATTCGAAACCAAATTTTTGATACTACCACCTAAAAGGTTTTTCTTTTTAGAACAGAAACGACAAAGAAAATTAGATGAATCACACTAAAGTAGGAGAAAAAAGAATAAAATTTGATTTCAAAAAGAAATTCTGATGCACGCAACGCGAAGCACGCGTCGCCTTTAAAATTCGCCCAAACATCGCCCAAGATTCGCCGAGGTGATGGTGGACGGCGCAGCTGCCACAGATCTAGGAGCTTCCGGTTAAAAGCCGCCCAAATAACGCTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGGCATGTACAGAAGCTC</pcr_primer_p1>
		<pcr_primer_p2>TCGCTAGATCCCTAGATCCT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGA</canonical_amplicon>
		<polymorphic_amplicon>GATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGWCCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24968</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1627247</contig_pos>
        <strand></strand>
        <context>AATGAGAGWC[C/T]TTCTYGTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGAC</left_flank>
        <right_flank>TTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTTAAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCGAAGCAAAAGCTCCTGCTCACTTCGATATTCCGACGAATCCATTCATCTTCTCTTTTTCAGATGTCCTCACTTTAATTTCGAATTCCTTACTTCAAACCAATTTGTGAAAGTCCTATATTCGAAACCAAATTTTTGATACTACCACCTAAAAGGTTTTTCTTTTTAGAACAGAAACGACAAAGAAAATTAGATGAATCACACTAAAGTAGGAGAAAAAAGAATAAAATTTGATTTCAAAAAGAAATTCTGATGCACGCAACGCGAAGCACGCGTCGCCTTTAAAATTCGCCCAAACATCGCCCAAGATTCGCCGAGGTGATGGTGGACGGCGCAGCTGCCACAGATCTAGGAGCTTCCGGTTAAAAGCCGCCCAAATAACGCTCTAAA</canonical>
            <polymorphic>ATTCTTAAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACYTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCGAAGCAAAAGCTCCTGCTCACTTCGATATTCCGACGAATCCATTCATCTTCTCTTTTTCAGATGTCCTCACTTTAATTTCGAATTCCTTACTTCAAACCAATTTGTGAAAGTCCTATATTCGAAACCAAATTTTTGATACTACCACCTAAAAGGTTTTTCTTTTTAGAACAGAAACGACAAAGAAAATTAGATGAATCACACTAAAGTAGGAGAAAAAAGAATAAAATTTGATTTCAAAAAGAAATTCTGATGCACGCAACGCGAAGCACGCGTCGCCTTTAAAATTCGCCCAAACATCGCCCAAGATTCGCCGAGGTGATGGTGGACGGCGCAGCTGCCACAGATCTAGGAGCTTCCGGTTAAAAGCCGCCCAAATAACGCTCTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGGCATGTACAGAAGCTC</pcr_primer_p1>
		<pcr_primer_p2>TCGCTAGATCCCTAGATCCT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGA</canonical_amplicon>
		<polymorphic_amplicon>GATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACYTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24969</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1627252</contig_pos>
        <strand></strand>
        <context>GAGWCYTTCT[C/T]GTTTGGATCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCT</left_flank>
        <right_flank>GTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCGAAGCAAAAGCTCCTGCTCACTTCGATATTCCGACGAATCCATTCATCTTCTCTTTTTCAGATGTCCTCACTTTAATTTCGAATTCCTTACTTCAAACCAATTTGTGAAAGTCCTATATTCGAAACCAAATTTTTGATACTACCACCTAAAAGGTTTTTCTTTTTAGAACAGAAACGACAAAGAAAATTAGATGAATCACACTAAAGTAGGAGAAAAAAGAATAAAATTTGATTTCAAAAAGAAATTCTGATGCACGCAACGCGAAGCACGCGTCGCCTTTAAAATTCGCCCAAACATCGCCCAAGATTCGCCGAGGTGATGGTGGACGGCGCAGCTGCCACAGATCTAGGAGCTTCCGGTTAAAAGCCGCCCAAATAACGCTCTAAAGCCGC</canonical>
            <polymorphic>TAAAAGTTTGACGAGTAATTTGAAATAGTGTAGCTGAACAGATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTYGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCGAAGCAAAAGCTCCTGCTCACTTCGATATTCCGACGAATCCATTCATCTTCTCTTTTTCAGATGTCCTCACTTTAATTTCGAATTCCTTACTTCAAACCAATTTGTGAAAGTCCTATATTCGAAACCAAATTTTTGATACTACCACCTAAAAGGTTTTTCTTTTTAGAACAGAAACGACAAAGAAAATTAGATGAATCACACTAAAGTAGGAGAAAAAAGAATAAAATTTGATTTCAAAAAGAAATTCTGATGCACGCAACGCGAAGCACGCGTCGCCTTTAAAATTCGCCCAAACATCGCCCAAGATTCGCCGAGGTGATGGTGGACGGCGCAGCTGCCACAGATCTAGGAGCTTCCGGTTAAAAGCCGCCCAAATAACGCTCTAAAGCCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGGCATGTACAGAAGCTC</pcr_primer_p1>
		<pcr_primer_p2>TCGCTAGATCCCTAGATCCT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGA</canonical_amplicon>
		<polymorphic_amplicon>GATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTYGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24970</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1627293</contig_pos>
        <strand></strand>
        <context>ATTTGGAGTT[T/A]AGGTTTCGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTT</left_flank>
        <right_flank>AGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCGAAGCAAAAGCTCCTGCTCACTTCGATATTCCGACGAATCCATTCATCTTCTCTTTTTCAGATGTCCTCACTTTAATTTCGAATTCCTTACTTCAAACCAATTTGTGAAAGTCCTATATTCGAAACCAAATTTTTGATACTACCACCTAAAAGGTTTTTCTTTTTAGAACAGAAACGACAAAGAAAATTAGATGAATCACACTAAAGTAGGAGAAAAAAGAATAAAATTTGATTTCAAAAAGAAATTCTGATGCACGCAACGCGAAGCACGCGTCGCCTTTAAAATTCGCCCAAACATCGCCCAAGATTCGCCGAGGTGATGGTGGACGGCGCAGCTGCCACAGATCTAGGAGCTTCCGGTTAAAAGCCGCCCAAATAACGCTCTAAAGCCGCATCCACCCCTGTATTCGCCCTAAATTTGCAGGCCACAACCG</canonical>
            <polymorphic>ATGATTTGTGTTTTGAAAGTGGAGTTTGAAAGTGGAGTTTGGAGTGGAGTTATCTATTAGATTCGCTTTGAATCATGATGTGGGTAGAGTAGGCAGTAGTTGTCACTTGGGTGCTCTGAAAAAAAAAACAAAGATAATTGTATTGATTTTATTGTTGCTTACCAATGAGATCTCTCAGATGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCACAGAAACCCAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTGCTTTTCGAACACCGCCGATCCCAGATGGCATGTACAGAAGCTCATGATAAATGGAACGGATAAGTCGACGAACTACTATAGAAAGATCTGGTTCATGTGGACGATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTWAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCGAAGCAAAAGCTCCTGCTCACTTCGATATTCCGACGAATCCATTCATCTTCTCTTTTTCAGATGTCCTCACTTTAATTTCGAATTCCTTACTTCAAACCAATTTGTGAAAGTCCTATATTCGAAACCAAATTTTTGATACTACCACCTAAAAGGTTTTTCTTTTTAGAACAGAAACGACAAAGAAAATTAGATGAATCACACTAAAGTAGGAGAAAAAAGAATAAAATTTGATTTCAAAAAGAAATTCTGATGCACGCAACGCGAAGCACGCGTCGCCTTTAAAATTCGCCCAAACATCGCCCAAGATTCGCCGAGGTGATGGTGGACGGCGCAGCTGCCACAGATCTAGGAGCTTCCGGTTAAAAGCCGCCCAAATAACGCTCTAAAGCCGCATCCACCCCTGTATTCGCCCTAAATTTGCAGGCCACAACCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGACGTATTGGATTGATGAG</pcr_primer_p1>
		<pcr_primer_p2>TAAGGAATTCGAAATTAAAGTGA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTTAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCGAAGCAAAAGCTCCTGCTCACTTCGATATTCCGACGAATCCATTCATCTTCTCTTTTTCAGATGTCCTCACTTTAATTTCGAATTCCTTA</canonical_amplicon>
		<polymorphic_amplicon>CAGACGTATTGGATTGATGAGCCGAATGAGAGACCTTCTCGTTTGGATCGTTGATCAAGACGAAGCTGGAATTTGGAGTTWAGGTTTCGAAGGATCTAGGGTTTGAAGATCCAAGGATCTAGGGATCTAGCGATCCTCAGGTTCTTCGAAGCAAAAGCTCCTGCTCACTTCGATATTCCGACGAATCCATTCATCTTCTCTTTTTCAGATGTCCTCACTTTAATTTCGAATTCCTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24971</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1677047</contig_pos>
        <strand></strand>
        <context>cgtttacagt[T/A]caaaaacgga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ACAGAATTTTTGGAAAATCCCCAGTTATTCAGCTATTAGCCGTTTACAGT</left_flank>
        <right_flank>CAAAAACGGACCAAGAAGGGGCCTCTTTTCGAAACCGGCAAAAATCTTAA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGCCGATGTGATCAAATTCATCTTCTGTGGAGATTGCCCGAGATATTCTCCGAGTCCGTGAGCATATTGTGGTTTTGGTAGCCATAATGGGTATGAAGAGATGTCGGTGTTCTGCAAATTATGTGTGTACTTCCGGCAATTTCCACAACAGGTCAAGAATTCATGCGGAATGTCTAGCAACATCTTATCAAATTATCTGATTAAAGAGATTAAATGGGAAAATCACGCCATATACATTTCTCAAAGATACTGTAACATCTCCGATTTTCGAAGATCAACGAGGATACGCTAATTTATAAAATTACAAAAAAATCGAAAAAATCTGTTAGTGCTGTTCGATAAGATATACAAAAATGTATTTTTCAAGTAATTTGTGGTCAGTTTGACCTTATTCAAGAGTCTGGAGATTGGCTTTGGAGACAGGCCTAGATTGAAAAATTCGCATTCACAGAATTTTTGGAAAATCCCCAGTTATTCAGCTATTAGCCGTTTACAGTTCAAAAACGGACCAAGAAGGGGCCTCTTTTCGAAACCGGCAAAAATCTTAAAAACAAGGAATTTTCAAAAAACCCTATTAATGCCTGTTTTTTAATCTATGCCCGTTTACACCCTCTAAAATTTTCGAAGTGATCGGAAACTTAACAGCCGAGCTCCAGACTCTTGAAAATAATTGAAGTCGCTAACAATTATCTGAAAATACGTTCTTGTATACTTTATTGACCGGAACTGTATGCCTTGTCCTTTTAAAATTTCATACGTAAACAAATAAACACTTCAAAATGTAGTGGAACCAATGGAGTTCGTAATTGGCAAAAGTAGCTTCACTTTTTTCTCATTAAAAATAAATAGTGTTTCTTTTTGAACCCATTATTCCTATTTTTTTCAGAATCCACCACTTCAGAATCTATTAAACCTCACTTCATTATCTGTTGGATAATATAATCGCATAAACAGGCCACGATCTCCAAGCACTGTTCCGTCGATCATCAAATCCTTGC</canonical>
            <polymorphic>ATCGCCGATGTGATCAAATTCATCTTCTGTGGAGATTGCCCGAGATATTCTCCGAGTCCGTGAGCATATTGTGGTTTTGGTAGCCATAATGGGTATGAAGAGATGTCGGTGTTCTGCAAATTATGTGTGTACTTCCGGCAATTTCCACAACAGGTCAAGAATTCATGCGGAATGTCTAGCAACATCTTATCAAATTATCTGATTAAAGAGATTAAATGGGAAAATCACGCCATATACATTTCTCAAAGATACTGTAACATCTCCGATTTTCGAAGATCAACGAGGATACGCTAATTTATAAAATTACAAAAAAATCGAAAAAATCTGTTAGTGCTGTTCGATAAGATATACAAAAATGTATTTTTCAAGTAATTTGTGGTCAGTTTGACCTTATTCAAGAGTCTGGAGATTGGCTTTGGAGACAGGCCTAGATTGAAAAATTCGCATTCACAGAATTTTTGGAAAATCCCCAGTTATTCAGCTATTAGCCGTTTACAGTWCAAAAACGGACCAAGAAGGGGCCTCTTTTCGAAACCGGCAAAAATCTTAAAAACAAGGAATTTTCAAAAAACCCTATTAATGCCTGTTTTTTAATCTATGCCCGTTTACACCCTCTAAAATTTTCGAAGTGATCGGAAACTTAACAGCCGAGCTCCAGACTCTTGAAAATAATTGAAGTCGCTAACAATTATCTGAAAATACGTTCTTGTATACTTTATTGACCGGAACTGTATGCCTTGTCCTTTTAAAATTTCATACGTAAACAAATAAACACTTCAAAATGTAGTGGAACCAATGGAGTTCGTAATTGGCAAAAGTAGCTTCACTTTTTTCTCATTAAAAATAAATAGTGTTTCTTTTTGAACCCATTATTCCTATTTTTTTCAGAATCCACCACTTCAGAATCTATTAAACCTCACTTCATTATCTGTTGGATAATATAATCGCATAAACAGGCCACGATCTCCAAGCACTGTTCCGTCGATCATCAAATCCTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACGAGGATACGCTAATTTAT</pcr_primer_p1>
		<pcr_primer_p2>AATTTTAAAAGGACAAGGCATAC</pcr_primer_p2>
		<pcr_amplicon_size>476</pcr_amplicon_size>
		<canonical_amplicon>CAACGAGGATACGCTAATTTATAAAATTACAAAAAAATCGAAAAAATCTGTTAGTGCTGTTCGATAAGATATACAAAAATGTATTTTTCAAGTAATTTGTGGTCAGTTTGACCTTATTCAAGAGTCTGGAGATTGGCTTTGGAGACAGGCCTAGATTGAAAAATTCGCATTCACAGAATTTTTGGAAAATCCCCAGTTATTCAGCTATTAGCCGTTTACAGTTCAAAAACGGACCAAGAAGGGGCCTCTTTTCGAAACCGGCAAAAATCTTAAAAACAAGGAATTTTCAAAAAACCCTATTAATGCCTGTTTTTTAATCTATGCCCGTTTACACCCTCTAAAATTTTCGAAGTGATCGGAAACTTAACAGCCGAGCTCCAGACTCTTGAAAATAATTGAAGTCGCTAACAATTATCTGAAAATACGTTCTTGTATACTTTATTGACCGGAACTGTATGCCTTGTCCTTTTAAAATT</canonical_amplicon>
		<polymorphic_amplicon>CAACGAGGATACGCTAATTTATAAAATTACAAAAAAATCGAAAAAATCTGTTAGTGCTGTTCGATAAGATATACAAAAATGTATTTTTCAAGTAATTTGTGGTCAGTTTGACCTTATTCAAGAGTCTGGAGATTGGCTTTGGAGACAGGCCTAGATTGAAAAATTCGCATTCACAGAATTTTTGGAAAATCCCCAGTTATTCAGCTATTAGCCGTTTACAGTWCAAAAACGGACCAAGAAGGGGCCTCTTTTCGAAACCGGCAAAAATCTTAAAAACAAGGAATTTTCAAAAAACCCTATTAATGCCTGTTTTTTAATCTATGCCCGTTTACACCCTCTAAAATTTTCGAAGTGATCGGAAACTTAACAGCCGAGCTCCAGACTCTTGAAAATAATTGAAGTCGCTAACAATTATCTGAAAATACGTTCTTGTATACTTTATTGACCGGAACTGTATGCCTTGTCCTTTTAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24972</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1677092</contig_pos>
        <strand></strand>
        <context>ccggcaaaaa[T/C]cttaaaaaca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACAGTTCAAAAACGGACCAAGAAGGGGCCTCTTTTCGAAACCGGCAAAAA</left_flank>
        <right_flank>CTTAAAAACAAGGAATTTTCAAAAAACCCTATTAATGCCTGTTTTTTAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTCTCCGAGTCCGTGAGCATATTGTGGTTTTGGTAGCCATAATGGGTATGAAGAGATGTCGGTGTTCTGCAAATTATGTGTGTACTTCCGGCAATTTCCACAACAGGTCAAGAATTCATGCGGAATGTCTAGCAACATCTTATCAAATTATCTGATTAAAGAGATTAAATGGGAAAATCACGCCATATACATTTCTCAAAGATACTGTAACATCTCCGATTTTCGAAGATCAACGAGGATACGCTAATTTATAAAATTACAAAAAAATCGAAAAAATCTGTTAGTGCTGTTCGATAAGATATACAAAAATGTATTTTTCAAGTAATTTGTGGTCAGTTTGACCTTATTCAAGAGTCTGGAGATTGGCTTTGGAGACAGGCCTAGATTGAAAAATTCGCATTCACAGAATTTTTGGAAAATCCCCAGTTATTCAGCTATTAGCCGTTTACAGTTCAAAAACGGACCAAGAAGGGGCCTCTTTTCGAAACCGGCAAAAATCTTAAAAACAAGGAATTTTCAAAAAACCCTATTAATGCCTGTTTTTTAATCTATGCCCGTTTACACCCTCTAAAATTTTCGAAGTGATCGGAAACTTAACAGCCGAGCTCCAGACTCTTGAAAATAATTGAAGTCGCTAACAATTATCTGAAAATACGTTCTTGTATACTTTATTGACCGGAACTGTATGCCTTGTCCTTTTAAAATTTCATACGTAAACAAATAAACACTTCAAAATGTAGTGGAACCAATGGAGTTCGTAATTGGCAAAAGTAGCTTCACTTTTTTCTCATTAAAAATAAATAGTGTTTCTTTTTGAACCCATTATTCCTATTTTTTTCAGAATCCACCACTTCAGAATCTATTAAACCTCACTTCATTATCTGTTGGATAATATAATCGCATAAACAGGCCACGATCTCCAAGCACTGTTCCGTCGATCATCAAATCCTTGCACCCGACTTGGAACTGACCCGACACCTTACGTGTGAGCACTTGTG</canonical>
            <polymorphic>TATTCTCCGAGTCCGTGAGCATATTGTGGTTTTGGTAGCCATAATGGGTATGAAGAGATGTCGGTGTTCTGCAAATTATGTGTGTACTTCCGGCAATTTCCACAACAGGTCAAGAATTCATGCGGAATGTCTAGCAACATCTTATCAAATTATCTGATTAAAGAGATTAAATGGGAAAATCACGCCATATACATTTCTCAAAGATACTGTAACATCTCCGATTTTCGAAGATCAACGAGGATACGCTAATTTATAAAATTACAAAAAAATCGAAAAAATCTGTTAGTGCTGTTCGATAAGATATACAAAAATGTATTTTTCAAGTAATTTGTGGTCAGTTTGACCTTATTCAAGAGTCTGGAGATTGGCTTTGGAGACAGGCCTAGATTGAAAAATTCGCATTCACAGAATTTTTGGAAAATCCCCAGTTATTCAGCTATTAGCCGTTTACAGTTCAAAAACGGACCAAGAAGGGGCCTCTTTTCGAAACCGGCAAAAAYCTTAAAAACAAGGAATTTTCAAAAAACCCTATTAATGCCTGTTTTTTAATCTATGCCCGTTTACACCCTCTAAAATTTTCGAAGTGATCGGAAACTTAACAGCCGAGCTCCAGACTCTTGAAAATAATTGAAGTCGCTAACAATTATCTGAAAATACGTTCTTGTATACTTTATTGACCGGAACTGTATGCCTTGTCCTTTTAAAATTTCATACGTAAACAAATAAACACTTCAAAATGTAGTGGAACCAATGGAGTTCGTAATTGGCAAAAGTAGCTTCACTTTTTTCTCATTAAAAATAAATAGTGTTTCTTTTTGAACCCATTATTCCTATTTTTTTCAGAATCCACCACTTCAGAATCTATTAAACCTCACTTCATTATCTGTTGGATAATATAATCGCATAAACAGGCCACGATCTCCAAGCACTGTTCCGTCGATCATCAAATCCTTGCACCCGACTTGGAACTGACCCGACACCTTACGTGTGAGCACTTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACGAGGATACGCTAATTTAT</pcr_primer_p1>
		<pcr_primer_p2>AATTTTAAAAGGACAAGGCATAC</pcr_primer_p2>
		<pcr_amplicon_size>476</pcr_amplicon_size>
		<canonical_amplicon>CAACGAGGATACGCTAATTTATAAAATTACAAAAAAATCGAAAAAATCTGTTAGTGCTGTTCGATAAGATATACAAAAATGTATTTTTCAAGTAATTTGTGGTCAGTTTGACCTTATTCAAGAGTCTGGAGATTGGCTTTGGAGACAGGCCTAGATTGAAAAATTCGCATTCACAGAATTTTTGGAAAATCCCCAGTTATTCAGCTATTAGCCGTTTACAGTTCAAAAACGGACCAAGAAGGGGCCTCTTTTCGAAACCGGCAAAAATCTTAAAAACAAGGAATTTTCAAAAAACCCTATTAATGCCTGTTTTTTAATCTATGCCCGTTTACACCCTCTAAAATTTTCGAAGTGATCGGAAACTTAACAGCCGAGCTCCAGACTCTTGAAAATAATTGAAGTCGCTAACAATTATCTGAAAATACGTTCTTGTATACTTTATTGACCGGAACTGTATGCCTTGTCCTTTTAAAATT</canonical_amplicon>
		<polymorphic_amplicon>CAACGAGGATACGCTAATTTATAAAATTACAAAAAAATCGAAAAAATCTGTTAGTGCTGTTCGATAAGATATACAAAAATGTATTTTTCAAGTAATTTGTGGTCAGTTTGACCTTATTCAAGAGTCTGGAGATTGGCTTTGGAGACAGGCCTAGATTGAAAAATTCGCATTCACAGAATTTTTGGAAAATCCCCAGTTATTCAGCTATTAGCCGTTTACAGTTCAAAAACGGACCAAGAAGGGGCCTCTTTTCGAAACCGGCAAAAAYCTTAAAAACAAGGAATTTTCAAAAAACCCTATTAATGCCTGTTTTTTAATCTATGCCCGTTTACACCCTCTAAAATTTTCGAAGTGATCGGAAACTTAACAGCCGAGCTCCAGACTCTTGAAAATAATTGAAGTCGCTAACAATTATCTGAAAATACGTTCTTGTATACTTTATTGACCGGAACTGTATGCCTTGTCCTTTTAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24973</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1677410</contig_pos>
        <strand>+</strand>
        <context>GTTTCTTTTT[A/G]AACCCATTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAAAGTAGCTTCACTTTTTTCTCATTAAAAATAAATAGTGTTTCTTTTT</left_flank>
        <right_flank>AACCCATTATTCCTATTTTTTTCAGAATCCACCACTTCAGAATCTATTAA</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAAGTAATTTGTGGTCAGTTTGACCTTATTCAAGAGTCTGGAGATTGGCTTTGGAGACAGGCCTAGATTGAAAAATTCGCATTCACAGAATTTTTGGAAAATCCCCAGTTATTCAGCTATTAGCCGTTTACAGTTCAAAAACGGACCAAGAAGGGGCCTCTTTTCGAAACCGGCAAAAATCTTAAAAACAAGGAATTTTCAAAAAACCCTATTAATGCCTGTTTTTTAATCTATGCCCGTTTACACCCTCTAAAATTTTCGAAGTGATCGGAAACTTAACAGCCGAGCTCCAGACTCTTGAAAATAATTGAAGTCGCTAACAATTATCTGAAAATACGTTCTTGTATACTTTATTGACCGGAACTGTATGCCTTGTCCTTTTAAAATTTCATACGTAAACAAATAAACACTTCAAAATGTAGTGGAACCAATGGAGTTCGTAATTGGCAAAAGTAGCTTCACTTTTTTCTCATTAAAAATAAATAGTGTTTCTTTTTGAACCCATTATTCCTATTTTTTTCAGAATCCACCACTTCAGAATCTATTAAACCTCACTTCATTATCTGTTGGATAATATAATCGCATAAACAGGCCACGATCTCCAAGCACTGTTCCGTCGATCATCAAATCCTTGCACCCGACTTGGAACTGACCCGACACCTTACGTGTGAGCACTTGTGGTGACGAGATGAAACTACCCATTTTGTTTATCTGAAAAATATTACTTCAAGATTTCTGAAACCAACAAACAAAAAGTTTCAACCCATTTTGTACTTTTTGTATGGAACACACAGGGTTAAGTAAAAGAAAAGAAGACAAGGAGCTTAGAATATAAAGAAGAAAGAGAAAAGTGAAAATGAAAATGAAGGTTTTCCTCTCCTTTTTCCGTCTGAACTACAAAAAATTGAAGGGTTTGGTGGCAGCAATTCGACTAAGTCGTACGCAAAAGGAGAGACAAAAAATACGCACAAAAAATTACAGCCGTCCTCGGAGATAGC</canonical>
            <polymorphic>TTCAAGTAATTTGTGGTCAGTTTGACCTTATTCAAGAGTCTGGAGATTGGCTTTGGAGACAGGCCTAGATTGAAAAATTCGCATTCACAGAATTTTTGGAAAATCCCCAGTTATTCAGCTATTAGCCGTTTACAGTTCAAAAACGGACCAAGAAGGGGCCTCTTTTCGAAACCGGCAAAAATCTTAAAAACAAGGAATTTTCAAAAAACCCTATTAATGCCTGTTTTTTAATCTATGCCCGTTTACACCCTCTAAAATTTTCGAAGTGATCGGAAACTTAACAGCCGAGCTCCAGACTCTTGAAAATAATTGAAGTCGCTAACAATTATCTGAAAATACGTTCTTGTATACTTTATTGACCGGAACTGTATGCCTTGTCCTTTTAAAATTTCATACGTAAACAAATAAACACTTCAAAATGTAGTGGAACCAATGGAGTTCGTAATTGGCAAAAGTAGCTTCACTTTTTTCTCATTAAAAATAAATAGTGTTTCTTTTTRAACCCATTATTCCTATTTTTTTCAGAATCCACCACTTCAGAATCTATTAAACCTCACTTCATTATCTGTTGGATAATATAATCGCATAAACAGGCCACGATCTCCAAGCACTGTTCCGTCGATCATCAAATCCTTGCACCCGACTTGGAACTGACCCGACACCTTACGTGTGAGCACTTGTGGTGACGAGATGAAACTACCCATTTTGTTTATCTGAAAAATATTACTTCAAGATTTCTGAAACCAACAAACAAAAAGTTTCAACCCATTTTGTACTTTTTGTATGGAACACACAGGGTTAAGTAAAAGAAAAGAAGACAAGGAGCTTAGAATATAAAGAAGAAAGAGAAAAGTGAAAATGAAAATGAAGGTTTTCCTCTCCTTTTTCCGTCTGAACTACAAAAAATTGAAGGGTTTGGTGGCAGCAATTCGACTAAGTCGTACGCAAAAGGAGAGACAAAAAATACGCACAAAAAATTACAGCCGTCCTCGGAGATAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGCAAAAGTAGCTTCACT</pcr_primer_p1>
		<pcr_primer_p2>GTAGTTTCATCTCGTCACCAC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TTGGCAAAAGTAGCTTCACTTTTTTCTCATTAAAAATAAATAGTGTTTCTTTTTGAACCCATTATTCCTATTTTTTTCAGAATCCACCACTTCAGAATCTATTAAACCTCACTTCATTATCTGTTGGATAATATAATCGCATAAACAGGCCACGATCTCCAAGCACTGTTCCGTCGATCATCAAATCCTTGCACCCGACTTGGAACTGACCCGACACCTTACGTGTGAGCACTTGTGGTGACGAGATGAAACTAC</canonical_amplicon>
		<polymorphic_amplicon>TTGGCAAAAGTAGCTTCACTTTTTTCTCATTAAAAATAAATAGTGTTTCTTTTTRAACCCATTATTCCTATTTTTTTCAGAATCCACCACTTCAGAATCTATTAAACCTCACTTCATTATCTGTTGGATAATATAATCGCATAAACAGGCCACGATCTCCAAGCACTGTTCCGTCGATCATCAAATCCTTGCACCCGACTTGGAACTGACCCGACACCTTACGTGTGAGCACTTGTGGTGACGAGATGAAACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24974</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1736404</contig_pos>
        <strand></strand>
        <context>TTTTTGACAT[A/C]MTTTTTCCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACAT</left_flank>
        <right_flank>TTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAGCTCAATTATCTTGATTCCTGTCAAAGATATCATGATTTAATCAACTGATGAAATATTGTTGATATTATGATAAATAAGTTTTCAGTTGACACAATTTTGATATCTTTCACAGGAATCAAGATAATTGGGCTCAAAGTTGTTTGACGGTTTGTTTGGGATTCTATAAGAGGACGACGGTAATTTCAATTTTTTGAATACTTTAAAACTCTTGATTTTAAGCGGATTTTTAGAGTTAGCTTCCAGAAAGATTTTACAATTTTTTCGAGAATACACCGAAAAAAATAAACCGTAAAATTAAAAACCGTCGCTTTTTTTCCAAGATTCATTTTTTCTAAAAATCCATCGCAATAGTGTTTCGTATTGAGATCAAAGTATGTTTCTTTTCTTGCTTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAAAACACAAATAAACCCAATTAACCTATCAAAGATCTTCATTCCCGAAAGCTTTCCCATTAATCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCTTCCACATCCTCCCTGCGGTGTTTGCGGTTGGCACGATCGACTCGTGGATTCGTTGGAGACCAGGATAACGAGTCACACCAGTCACGTCCGAGATAAAAGTGACGATAGAGTACCATTATTCCGTAGATGGTTCTGAAAGTTTTTTTTTCAGTTTTTTTTTTCAAAAAAATTCGGAATGCGTTAAAGACTAATCAAGATAAGCAACTTACAAGAAAAATAGGACGACACCTCCTAAGGTAAGCAGCGATCCAGTAATCG</canonical>
            <polymorphic>AAGAGCTCAATTATCTTGATTCCTGTCAAAGATATCATGATTTAATCAACTGATGAAATATTGTTGATATTATGATAAATAAGTTTTCAGTTGACACAATTTTGATATCTTTCACAGGAATCAAGATAATTGGGCTCAAAGTTGTTTGACGGTTTGTTTGGGATTCTATAAGAGGACGACGGTAATTTCAATTTTTTGAATACTTTAAAACTCTTGATTTTAAGCGGATTTTTAGAGTTAGCTTCCAGAAAGATTTTACAATTTTTTCGAGAATACACCGAAAAAAATAAACCGTAAAATTAAAAACCGTCGCTTTTTTTCCAAGATTCATTTTTTCTAAAAATCCATCGCAATAGTGTTTCGTATTGAGATCAAAGTATGTTTCTTTTCTTGCTTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATMTTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAAAACACAAATAAACCCAATTAACCTATCAAAGATCTTCATTCCCGAAAGCTTTCCCATTAATCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCTTCCACATCCTCCCTGCGGTGTTTGCGGTTGGCACGATCGACTCGTGGATTCGTTGGAGACCAGGATAACGAGTCACACCAGTCACGTCCGAGATAAAAGTGACGATAGAGTACCATTATTCCGTAGATGGTTCTGAAAGTTTTTTTTTCAGTTTTTTTTTTCAAAAAAATTCGGAATGCGTTAAAGACTAATCAAGATAAGCAACTTACAAGAAAAATAGGACGACACCTCCTAAGGTAAGCAGCGATCCAGTAATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCGTTTCTGTGTAGATTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAATCCGTTAATAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATMTTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24975</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1736405</contig_pos>
        <strand>+</strand>
        <context>TTTTGACATM[A/C]TTTTTCCTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATA</left_flank>
        <right_flank>TTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGCTCAATTATCTTGATTCCTGTCAAAGATATCATGATTTAATCAACTGATGAAATATTGTTGATATTATGATAAATAAGTTTTCAGTTGACACAATTTTGATATCTTTCACAGGAATCAAGATAATTGGGCTCAAAGTTGTTTGACGGTTTGTTTGGGATTCTATAAGAGGACGACGGTAATTTCAATTTTTTGAATACTTTAAAACTCTTGATTTTAAGCGGATTTTTAGAGTTAGCTTCCAGAAAGATTTTACAATTTTTTCGAGAATACACCGAAAAAAATAAACCGTAAAATTAAAAACCGTCGCTTTTTTTCCAAGATTCATTTTTTCTAAAAATCCATCGCAATAGTGTTTCGTATTGAGATCAAAGTATGTTTCTTTTCTTGCTTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAAAACACAAATAAACCCAATTAACCTATCAAAGATCTTCATTCCCGAAAGCTTTCCCATTAATCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCTTCCACATCCTCCCTGCGGTGTTTGCGGTTGGCACGATCGACTCGTGGATTCGTTGGAGACCAGGATAACGAGTCACACCAGTCACGTCCGAGATAAAAGTGACGATAGAGTACCATTATTCCGTAGATGGTTCTGAAAGTTTTTTTTTCAGTTTTTTTTTTCAAAAAAATTCGGAATGCGTTAAAGACTAATCAAGATAAGCAACTTACAAGAAAAATAGGACGACACCTCCTAAGGTAAGCAGCGATCCAGTAATCGA</canonical>
            <polymorphic>AGAGCTCAATTATCTTGATTCCTGTCAAAGATATCATGATTTAATCAACTGATGAAATATTGTTGATATTATGATAAATAAGTTTTCAGTTGACACAATTTTGATATCTTTCACAGGAATCAAGATAATTGGGCTCAAAGTTGTTTGACGGTTTGTTTGGGATTCTATAAGAGGACGACGGTAATTTCAATTTTTTGAATACTTTAAAACTCTTGATTTTAAGCGGATTTTTAGAGTTAGCTTCCAGAAAGATTTTACAATTTTTTCGAGAATACACCGAAAAAAATAAACCGTAAAATTAAAAACCGTCGCTTTTTTTCCAAGATTCATTTTTTCTAAAAATCCATCGCAATAGTGTTTCGTATTGAGATCAAAGTATGTTTCTTTTCTTGCTTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATAMTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAAAACACAAATAAACCCAATTAACCTATCAAAGATCTTCATTCCCGAAAGCTTTCCCATTAATCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCTTCCACATCCTCCCTGCGGTGTTTGCGGTTGGCACGATCGACTCGTGGATTCGTTGGAGACCAGGATAACGAGTCACACCAGTCACGTCCGAGATAAAAGTGACGATAGAGTACCATTATTCCGTAGATGGTTCTGAAAGTTTTTTTTTCAGTTTTTTTTTTCAAAAAAATTCGGAATGCGTTAAAGACTAATCAAGATAAGCAACTTACAAGAAAAATAGGACGACACCTCCTAAGGTAAGCAGCGATCCAGTAATCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCGTTTCTGTGTAGATTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAATCCGTTAATAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATAMTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24976</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1736421</contig_pos>
        <strand>+</strand>
        <context>CCTGAGAGCT[G/T]GATTCTATTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCT</left_flank>
        <right_flank>GATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACT</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTCCTGTCAAAGATATCATGATTTAATCAACTGATGAAATATTGTTGATATTATGATAAATAAGTTTTCAGTTGACACAATTTTGATATCTTTCACAGGAATCAAGATAATTGGGCTCAAAGTTGTTTGACGGTTTGTTTGGGATTCTATAAGAGGACGACGGTAATTTCAATTTTTTGAATACTTTAAAACTCTTGATTTTAAGCGGATTTTTAGAGTTAGCTTCCAGAAAGATTTTACAATTTTTTCGAGAATACACCGAAAAAAATAAACCGTAAAATTAAAAACCGTCGCTTTTTTTCCAAGATTCATTTTTTCTAAAAATCCATCGCAATAGTGTTTCGTATTGAGATCAAAGTATGTTTCTTTTCTTGCTTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAAAACACAAATAAACCCAATTAACCTATCAAAGATCTTCATTCCCGAAAGCTTTCCCATTAATCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCTTCCACATCCTCCCTGCGGTGTTTGCGGTTGGCACGATCGACTCGTGGATTCGTTGGAGACCAGGATAACGAGTCACACCAGTCACGTCCGAGATAAAAGTGACGATAGAGTACCATTATTCCGTAGATGGTTCTGAAAGTTTTTTTTTCAGTTTTTTTTTTCAAAAAAATTCGGAATGCGTTAAAGACTAATCAAGATAAGCAACTTACAAGAAAAATAGGACGACACCTCCTAAGGTAAGCAGCGATCCAGTAATCGATTCGAAATCTTCCTTA</canonical>
            <polymorphic>GATTCCTGTCAAAGATATCATGATTTAATCAACTGATGAAATATTGTTGATATTATGATAAATAAGTTTTCAGTTGACACAATTTTGATATCTTTCACAGGAATCAAGATAATTGGGCTCAAAGTTGTTTGACGGTTTGTTTGGGATTCTATAAGAGGACGACGGTAATTTCAATTTTTTGAATACTTTAAAACTCTTGATTTTAAGCGGATTTTTAGAGTTAGCTTCCAGAAAGATTTTACAATTTTTTCGAGAATACACCGAAAAAAATAAACCGTAAAATTAAAAACCGTCGCTTTTTTTCCAAGATTCATTTTTTCTAAAAATCCATCGCAATAGTGTTTCGTATTGAGATCAAAGTATGTTTCTTTTCTTGCTTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCTKGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAAAACACAAATAAACCCAATTAACCTATCAAAGATCTTCATTCCCGAAAGCTTTCCCATTAATCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCTTCCACATCCTCCCTGCGGTGTTTGCGGTTGGCACGATCGACTCGTGGATTCGTTGGAGACCAGGATAACGAGTCACACCAGTCACGTCCGAGATAAAAGTGACGATAGAGTACCATTATTCCGTAGATGGTTCTGAAAGTTTTTTTTTCAGTTTTTTTTTTCAAAAAAATTCGGAATGCGTTAAAGACTAATCAAGATAAGCAACTTACAAGAAAAATAGGACGACACCTCCTAAGGTAAGCAGCGATCCAGTAATCGATTCGAAATCTTCCTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCGTTTCTGTGTAGATTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAATCCGTTAATAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCTKGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24977</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1736459</contig_pos>
        <strand>+</strand>
        <context>GAGGGACTTT[A/C]TCCAGAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTT</left_flank>
        <right_flank>TCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATT</right_flank>
        <qual_score>145</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATATTGTTGATATTATGATAAATAAGTTTTCAGTTGACACAATTTTGATATCTTTCACAGGAATCAAGATAATTGGGCTCAAAGTTGTTTGACGGTTTGTTTGGGATTCTATAAGAGGACGACGGTAATTTCAATTTTTTGAATACTTTAAAACTCTTGATTTTAAGCGGATTTTTAGAGTTAGCTTCCAGAAAGATTTTACAATTTTTTCGAGAATACACCGAAAAAAATAAACCGTAAAATTAAAAACCGTCGCTTTTTTTCCAAGATTCATTTTTTCTAAAAATCCATCGCAATAGTGTTTCGTATTGAGATCAAAGTATGTTTCTTTTCTTGCTTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAAAACACAAATAAACCCAATTAACCTATCAAAGATCTTCATTCCCGAAAGCTTTCCCATTAATCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCTTCCACATCCTCCCTGCGGTGTTTGCGGTTGGCACGATCGACTCGTGGATTCGTTGGAGACCAGGATAACGAGTCACACCAGTCACGTCCGAGATAAAAGTGACGATAGAGTACCATTATTCCGTAGATGGTTCTGAAAGTTTTTTTTTCAGTTTTTTTTTTCAAAAAAATTCGGAATGCGTTAAAGACTAATCAAGATAAGCAACTTACAAGAAAAATAGGACGACACCTCCTAAGGTAAGCAGCGATCCAGTAATCGATTCGAAATCTTCCTTAGCCATGCTGGCGACGACAACAACTGGAGTCATGACGCT</canonical>
            <polymorphic>AAATATTGTTGATATTATGATAAATAAGTTTTCAGTTGACACAATTTTGATATCTTTCACAGGAATCAAGATAATTGGGCTCAAAGTTGTTTGACGGTTTGTTTGGGATTCTATAAGAGGACGACGGTAATTTCAATTTTTTGAATACTTTAAAACTCTTGATTTTAAGCGGATTTTTAGAGTTAGCTTCCAGAAAGATTTTACAATTTTTTCGAGAATACACCGAAAAAAATAAACCGTAAAATTAAAAACCGTCGCTTTTTTTCCAAGATTCATTTTTTCTAAAAATCCATCGCAATAGTGTTTCGTATTGAGATCAAAGTATGTTTCTTTTCTTGCTTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTMTCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAAAACACAAATAAACCCAATTAACCTATCAAAGATCTTCATTCCCGAAAGCTTTCCCATTAATCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCTTCCACATCCTCCCTGCGGTGTTTGCGGTTGGCACGATCGACTCGTGGATTCGTTGGAGACCAGGATAACGAGTCACACCAGTCACGTCCGAGATAAAAGTGACGATAGAGTACCATTATTCCGTAGATGGTTCTGAAAGTTTTTTTTTCAGTTTTTTTTTTCAAAAAAATTCGGAATGCGTTAAAGACTAATCAAGATAAGCAACTTACAAGAAAAATAGGACGACACCTCCTAAGGTAAGCAGCGATCCAGTAATCGATTCGAAATCTTCCTTAGCCATGCTGGCGACGACAACAACTGGAGTCATGACGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCGTTTCTGTGTAGATTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAATCCGTTAATAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTMTCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24978</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1736473</contig_pos>
        <strand>+</strand>
        <context>AGAAAAACTT[C/T]CCRAATTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTT</left_flank>
        <right_flank>CCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATC</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATGATAAATAAGTTTTCAGTTGACACAATTTTGATATCTTTCACAGGAATCAAGATAATTGGGCTCAAAGTTGTTTGACGGTTTGTTTGGGATTCTATAAGAGGACGACGGTAATTTCAATTTTTTGAATACTTTAAAACTCTTGATTTTAAGCGGATTTTTAGAGTTAGCTTCCAGAAAGATTTTACAATTTTTTCGAGAATACACCGAAAAAAATAAACCGTAAAATTAAAAACCGTCGCTTTTTTTCCAAGATTCATTTTTTCTAAAAATCCATCGCAATAGTGTTTCGTATTGAGATCAAAGTATGTTTCTTTTCTTGCTTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAAAACACAAATAAACCCAATTAACCTATCAAAGATCTTCATTCCCGAAAGCTTTCCCATTAATCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCTTCCACATCCTCCCTGCGGTGTTTGCGGTTGGCACGATCGACTCGTGGATTCGTTGGAGACCAGGATAACGAGTCACACCAGTCACGTCCGAGATAAAAGTGACGATAGAGTACCATTATTCCGTAGATGGTTCTGAAAGTTTTTTTTTCAGTTTTTTTTTTCAAAAAAATTCGGAATGCGTTAAAGACTAATCAAGATAAGCAACTTACAAGAAAAATAGGACGACACCTCCTAAGGTAAGCAGCGATCCAGTAATCGATTCGAAATCTTCCTTAGCCATGCTGGCGACGACAACAACTGGAGTCATGACGCTGTAGAAACAAAAAA</canonical>
            <polymorphic>TTATGATAAATAAGTTTTCAGTTGACACAATTTTGATATCTTTCACAGGAATCAAGATAATTGGGCTCAAAGTTGTTTGACGGTTTGTTTGGGATTCTATAAGAGGACGACGGTAATTTCAATTTTTTGAATACTTTAAAACTCTTGATTTTAAGCGGATTTTTAGAGTTAGCTTCCAGAAAGATTTTACAATTTTTTCGAGAATACACCGAAAAAAATAAACCGTAAAATTAAAAACCGTCGCTTTTTTTCCAAGATTCATTTTTTCTAAAAATCCATCGCAATAGTGTTTCGTATTGAGATCAAAGTATGTTTCTTTTCTTGCTTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTYCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAAAACACAAATAAACCCAATTAACCTATCAAAGATCTTCATTCCCGAAAGCTTTCCCATTAATCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCTTCCACATCCTCCCTGCGGTGTTTGCGGTTGGCACGATCGACTCGTGGATTCGTTGGAGACCAGGATAACGAGTCACACCAGTCACGTCCGAGATAAAAGTGACGATAGAGTACCATTATTCCGTAGATGGTTCTGAAAGTTTTTTTTTCAGTTTTTTTTTTCAAAAAAATTCGGAATGCGTTAAAGACTAATCAAGATAAGCAACTTACAAGAAAAATAGGACGACACCTCCTAAGGTAAGCAGCGATCCAGTAATCGATTCGAAATCTTCCTTAGCCATGCTGGCGACGACAACAACTGGAGTCATGACGCTGTAGAAACAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>495 377 128</canonical_bands>
                <polymorphic_bands>623 377</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCGTTTCTGTGTAGATTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAATCCGTTAATAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTYCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24979</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1736476</contig_pos>
        <strand>+</strand>
        <context>AAAACTTYCC[A/G]AATTTTGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCC</left_flank>
        <right_flank>AATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCAC</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATAAATAAGTTTTCAGTTGACACAATTTTGATATCTTTCACAGGAATCAAGATAATTGGGCTCAAAGTTGTTTGACGGTTTGTTTGGGATTCTATAAGAGGACGACGGTAATTTCAATTTTTTGAATACTTTAAAACTCTTGATTTTAAGCGGATTTTTAGAGTTAGCTTCCAGAAAGATTTTACAATTTTTTCGAGAATACACCGAAAAAAATAAACCGTAAAATTAAAAACCGTCGCTTTTTTTCCAAGATTCATTTTTTCTAAAAATCCATCGCAATAGTGTTTCGTATTGAGATCAAAGTATGTTTCTTTTCTTGCTTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAAAACACAAATAAACCCAATTAACCTATCAAAGATCTTCATTCCCGAAAGCTTTCCCATTAATCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCTTCCACATCCTCCCTGCGGTGTTTGCGGTTGGCACGATCGACTCGTGGATTCGTTGGAGACCAGGATAACGAGTCACACCAGTCACGTCCGAGATAAAAGTGACGATAGAGTACCATTATTCCGTAGATGGTTCTGAAAGTTTTTTTTTCAGTTTTTTTTTTCAAAAAAATTCGGAATGCGTTAAAGACTAATCAAGATAAGCAACTTACAAGAAAAATAGGACGACACCTCCTAAGGTAAGCAGCGATCCAGTAATCGATTCGAAATCTTCCTTAGCCATGCTGGCGACGACAACAACTGGAGTCATGACGCTGTAGAAACAAAAAAGAT</canonical>
            <polymorphic>TGATAAATAAGTTTTCAGTTGACACAATTTTGATATCTTTCACAGGAATCAAGATAATTGGGCTCAAAGTTGTTTGACGGTTTGTTTGGGATTCTATAAGAGGACGACGGTAATTTCAATTTTTTGAATACTTTAAAACTCTTGATTTTAAGCGGATTTTTAGAGTTAGCTTCCAGAAAGATTTTACAATTTTTTCGAGAATACACCGAAAAAAATAAACCGTAAAATTAAAAACCGTCGCTTTTTTTCCAAGATTCATTTTTTCTAAAAATCCATCGCAATAGTGTTTCGTATTGAGATCAAAGTATGTTTCTTTTCTTGCTTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCRAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAAAACACAAATAAACCCAATTAACCTATCAAAGATCTTCATTCCCGAAAGCTTTCCCATTAATCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCTTCCACATCCTCCCTGCGGTGTTTGCGGTTGGCACGATCGACTCGTGGATTCGTTGGAGACCAGGATAACGAGTCACACCAGTCACGTCCGAGATAAAAGTGACGATAGAGTACCATTATTCCGTAGATGGTTCTGAAAGTTTTTTTTTCAGTTTTTTTTTTCAAAAAAATTCGGAATGCGTTAAAGACTAATCAAGATAAGCAACTTACAAGAAAAATAGGACGACACCTCCTAAGGTAAGCAGCGATCCAGTAATCGATTCGAAATCTTCCTTAGCCATGCTGGCGACGACAACAACTGGAGTCATGACGCTGTAGAAACAAAAAAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>347 337 163 118 35</canonical_bands>
                <polymorphic_bands>372 347 163 118</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCGTTTCTGTGTAGATTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAATCCGTTAATAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCRAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24980</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1736517</contig_pos>
        <strand>+</strand>
        <context>ATTACAAAGA[C/T]GAAATCCACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGA</left_flank>
        <right_flank>GAAATCCACAATTTTATTAACGGATTTCAAAAACACAAATAAACCCAATT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGGAATCAAGATAATTGGGCTCAAAGTTGTTTGACGGTTTGTTTGGGATTCTATAAGAGGACGACGGTAATTTCAATTTTTTGAATACTTTAAAACTCTTGATTTTAAGCGGATTTTTAGAGTTAGCTTCCAGAAAGATTTTACAATTTTTTCGAGAATACACCGAAAAAAATAAACCGTAAAATTAAAAACCGTCGCTTTTTTTCCAAGATTCATTTTTTCTAAAAATCCATCGCAATAGTGTTTCGTATTGAGATCAAAGTATGTTTCTTTTCTTGCTTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAAAACACAAATAAACCCAATTAACCTATCAAAGATCTTCATTCCCGAAAGCTTTCCCATTAATCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCTTCCACATCCTCCCTGCGGTGTTTGCGGTTGGCACGATCGACTCGTGGATTCGTTGGAGACCAGGATAACGAGTCACACCAGTCACGTCCGAGATAAAAGTGACGATAGAGTACCATTATTCCGTAGATGGTTCTGAAAGTTTTTTTTTCAGTTTTTTTTTTCAAAAAAATTCGGAATGCGTTAAAGACTAATCAAGATAAGCAACTTACAAGAAAAATAGGACGACACCTCCTAAGGTAAGCAGCGATCCAGTAATCGATTCGAAATCTTCCTTAGCCATGCTGGCGACGACAACAACTGGAGTCATGACGCTGTAGAAACAAAAAAGATGAAGTGGTATGCGTGTGTGTGGTTGTTTCGCCTTGCTCGGC</canonical>
            <polymorphic>ACAGGAATCAAGATAATTGGGCTCAAAGTTGTTTGACGGTTTGTTTGGGATTCTATAAGAGGACGACGGTAATTTCAATTTTTTGAATACTTTAAAACTCTTGATTTTAAGCGGATTTTTAGAGTTAGCTTCCAGAAAGATTTTACAATTTTTTCGAGAATACACCGAAAAAAATAAACCGTAAAATTAAAAACCGTCGCTTTTTTTCCAAGATTCATTTTTTCTAAAAATCCATCGCAATAGTGTTTCGTATTGAGATCAAAGTATGTTTCTTTTCTTGCTTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGAYGAAATCCACAATTTTATTAACGGATTTCAAAAACACAAATAAACCCAATTAACCTATCAAAGATCTTCATTCCCGAAAGCTTTCCCATTAATCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCTTCCACATCCTCCCTGCGGTGTTTGCGGTTGGCACGATCGACTCGTGGATTCGTTGGAGACCAGGATAACGAGTCACACCAGTCACGTCCGAGATAAAAGTGACGATAGAGTACCATTATTCCGTAGATGGTTCTGAAAGTTTTTTTTTCAGTTTTTTTTTTCAAAAAAATTCGGAATGCGTTAAAGACTAATCAAGATAAGCAACTTACAAGAAAAATAGGACGACACCTCCTAAGGTAAGCAGCGATCCAGTAATCGATTCGAAATCTTCCTTAGCCATGCTGGCGACGACAACAACTGGAGTCATGACGCTGTAGAAACAAAAAAGATGAAGTGGTATGCGTGTGTGTGGTTGTTTCGCCTTGCTCGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATGTTTTTAATAGAAAAGTGATG</pcr_primer_p1>
		<pcr_primer_p2>GGAATGAAGATCTTTGATAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>TGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAAAACACAAATAAACCCAATTAACCTATCAAAGATCTTCATTCC</canonical_amplicon>
		<polymorphic_amplicon>TGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGAYGAAATCCACAATTTTATTAACGGATTTCAAAAACACAAATAAACCCAATTAACCTATCAAAGATCTTCATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24981</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1736562</contig_pos>
        <strand>+</strand>
        <context>ACAAATAAAC[C/T]CAATTAACCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGATGAAATCCACAATTTTATTAACGGATTTCAAAAACACAAATAAAC</left_flank>
        <right_flank>CAATTAACCTATCAAAGATCTTCATTCCCGAAAGCTTTCCCATTAATCTG</right_flank>
        <qual_score>148</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGATTCTATAAGAGGACGACGGTAATTTCAATTTTTTGAATACTTTAAAACTCTTGATTTTAAGCGGATTTTTAGAGTTAGCTTCCAGAAAGATTTTACAATTTTTTCGAGAATACACCGAAAAAAATAAACCGTAAAATTAAAAACCGTCGCTTTTTTTCCAAGATTCATTTTTTCTAAAAATCCATCGCAATAGTGTTTCGTATTGAGATCAAAGTATGTTTCTTTTCTTGCTTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAAAACACAAATAAACCCAATTAACCTATCAAAGATCTTCATTCCCGAAAGCTTTCCCATTAATCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCTTCCACATCCTCCCTGCGGTGTTTGCGGTTGGCACGATCGACTCGTGGATTCGTTGGAGACCAGGATAACGAGTCACACCAGTCACGTCCGAGATAAAAGTGACGATAGAGTACCATTATTCCGTAGATGGTTCTGAAAGTTTTTTTTTCAGTTTTTTTTTTCAAAAAAATTCGGAATGCGTTAAAGACTAATCAAGATAAGCAACTTACAAGAAAAATAGGACGACACCTCCTAAGGTAAGCAGCGATCCAGTAATCGATTCGAAATCTTCCTTAGCCATGCTGGCGACGACAACAACTGGAGTCATGACGCTGTAGAAACAAAAAAGATGAAGTGGTATGCGTGTGTGTGGTTGTTTCGCCTTGCTCGGCGCCCCAGCGGCCGACTCGAAGACTTTTTTGTTGGCATTCAAGGTC</canonical>
            <polymorphic>TGGGATTCTATAAGAGGACGACGGTAATTTCAATTTTTTGAATACTTTAAAACTCTTGATTTTAAGCGGATTTTTAGAGTTAGCTTCCAGAAAGATTTTACAATTTTTTCGAGAATACACCGAAAAAAATAAACCGTAAAATTAAAAACCGTCGCTTTTTTTCCAAGATTCATTTTTTCTAAAAATCCATCGCAATAGTGTTTCGTATTGAGATCAAAGTATGTTTCTTTTCTTGCTTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAAAACACAAATAAACYCAATTAACCTATCAAAGATCTTCATTCCCGAAAGCTTTCCCATTAATCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCTTCCACATCCTCCCTGCGGTGTTTGCGGTTGGCACGATCGACTCGTGGATTCGTTGGAGACCAGGATAACGAGTCACACCAGTCACGTCCGAGATAAAAGTGACGATAGAGTACCATTATTCCGTAGATGGTTCTGAAAGTTTTTTTTTCAGTTTTTTTTTTCAAAAAAATTCGGAATGCGTTAAAGACTAATCAAGATAAGCAACTTACAAGAAAAATAGGACGACACCTCCTAAGGTAAGCAGCGATCCAGTAATCGATTCGAAATCTTCCTTAGCCATGCTGGCGACGACAACAACTGGAGTCATGACGCTGTAGAAACAAAAAAGATGAAGTGGTATGCGTGTGTGTGGTTGTTTCGCCTTGCTCGGCGCCCCAGCGGCCGACTCGAAGACTTTTTTGTTGGCATTCAAGGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTCAGGAGGGACTTT</pcr_primer_p1>
		<pcr_primer_p2>CTGGTGTGACTCGTTATCCT</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAAAACACAAATAAACCCAATTAACCTATCAAAGATCTTCATTCCCGAAAGCTTTCCCATTAATCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCTTCCACATCCTCCCTGCGGTGTTTGCGGTTGGCACGATCGACTCGTGGATTCGTTGGAGACCAGGATAACGAGTCACACCAG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAAAACACAAATAAACYCAATTAACCTATCAAAGATCTTCATTCCCGAAAGCTTTCCCATTAATCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCTTCCACATCCTCCCTGCGGTGTTTGCGGTTGGCACGATCGACTCGTGGATTCGTTGGAGACCAGGATAACGAGTCACACCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24982</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1736596</contig_pos>
        <strand>+</strand>
        <context>ATTCCCGAAA[A/G]CTTTCCCATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAACACAAATAAACCCAATTAACCTATCAAAGATCTTCATTCCCGAAA</left_flank>
        <right_flank>CTTTCCCATTAATCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCT</right_flank>
        <qual_score>148</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTGAATACTTTAAAACTCTTGATTTTAAGCGGATTTTTAGAGTTAGCTTCCAGAAAGATTTTACAATTTTTTCGAGAATACACCGAAAAAAATAAACCGTAAAATTAAAAACCGTCGCTTTTTTTCCAAGATTCATTTTTTCTAAAAATCCATCGCAATAGTGTTTCGTATTGAGATCAAAGTATGTTTCTTTTCTTGCTTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAAAACACAAATAAACCCAATTAACCTATCAAAGATCTTCATTCCCGAAAGCTTTCCCATTAATCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCTTCCACATCCTCCCTGCGGTGTTTGCGGTTGGCACGATCGACTCGTGGATTCGTTGGAGACCAGGATAACGAGTCACACCAGTCACGTCCGAGATAAAAGTGACGATAGAGTACCATTATTCCGTAGATGGTTCTGAAAGTTTTTTTTTCAGTTTTTTTTTTCAAAAAAATTCGGAATGCGTTAAAGACTAATCAAGATAAGCAACTTACAAGAAAAATAGGACGACACCTCCTAAGGTAAGCAGCGATCCAGTAATCGATTCGAAATCTTCCTTAGCCATGCTGGCGACGACAACAACTGGAGTCATGACGCTGTAGAAACAAAAAAGATGAAGTGGTATGCGTGTGTGTGGTTGTTTCGCCTTGCTCGGCGCCCCAGCGGCCGACTCGAAGACTTTTTTGTTGGCATTCAAGGTCGTAAATTTACCCCTTTATTACACTCCTAGACATT</canonical>
            <polymorphic>TTTTTGAATACTTTAAAACTCTTGATTTTAAGCGGATTTTTAGAGTTAGCTTCCAGAAAGATTTTACAATTTTTTCGAGAATACACCGAAAAAAATAAACCGTAAAATTAAAAACCGTCGCTTTTTTTCCAAGATTCATTTTTTCTAAAAATCCATCGCAATAGTGTTTCGTATTGAGATCAAAGTATGTTTCTTTTCTTGCTTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAAAACACAAATAAACCCAATTAACCTATCAAAGATCTTCATTCCCGAAARCTTTCCCATTAATCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCTTCCACATCCTCCCTGCGGTGTTTGCGGTTGGCACGATCGACTCGTGGATTCGTTGGAGACCAGGATAACGAGTCACACCAGTCACGTCCGAGATAAAAGTGACGATAGAGTACCATTATTCCGTAGATGGTTCTGAAAGTTTTTTTTTCAGTTTTTTTTTTCAAAAAAATTCGGAATGCGTTAAAGACTAATCAAGATAAGCAACTTACAAGAAAAATAGGACGACACCTCCTAAGGTAAGCAGCGATCCAGTAATCGATTCGAAATCTTCCTTAGCCATGCTGGCGACGACAACAACTGGAGTCATGACGCTGTAGAAACAAAAAAGATGAAGTGGTATGCGTGTGTGTGGTTGTTTCGCCTTGCTCGGCGCCCCAGCGGCCGACTCGAAGACTTTTTTGTTGGCATTCAAGGTCGTAAATTTACCCCTTTATTACACTCCTAGACATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>500 273 178 49</canonical_bands>
                <polymorphic_bands>678 273 49</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>326 273 178 105 69 49</canonical_bands>
                <polymorphic_bands>504 273 105 69 49</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAATTTTATTAACGGATTTCAA</pcr_primer_p1>
		<pcr_primer_p2>TACGGAATAATGGTACTCTATCG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACAATTTTATTAACGGATTTCAAAAACACAAATAAACCCAATTAACCTATCAAAGATCTTCATTCCCGAAAGCTTTCCCATTAATCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCTTCCACATCCTCCCTGCGGTGTTTGCGGTTGGCACGATCGACTCGTGGATTCGTTGGAGACCAGGATAACGAGTCACACCAGTCACGTCCGAGATAAAAGTGACGATAGAGTACCATTATTCCGTA</canonical_amplicon>
		<polymorphic_amplicon>ACAATTTTATTAACGGATTTCAAAAACACAAATAAACCCAATTAACCTATCAAAGATCTTCATTCCCGAAARCTTTCCCATTAATCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCTTCCACATCCTCCCTGCGGTGTTTGCGGTTGGCACGATCGACTCGTGGATTCGTTGGAGACCAGGATAACGAGTCACACCAGTCACGTCCGAGATAAAAGTGACGATAGAGTACCATTATTCCGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24983</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1736659</contig_pos>
        <strand>+</strand>
        <context>CACATCCTCC[A/C]TGCGGTGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCTTCCACATCCTCC</left_flank>
        <right_flank>TGCGGTGTTTGCGGTTGGCACGATCGACTCGTGGATTCGTTGGAGACCAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTACAATTTTTTCGAGAATACACCGAAAAAAATAAACCGTAAAATTAAAAACCGTCGCTTTTTTTCCAAGATTCATTTTTTCTAAAAATCCATCGCAATAGTGTTTCGTATTGAGATCAAAGTATGTTTCTTTTCTTGCTTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAAAACACAAATAAACCCAATTAACCTATCAAAGATCTTCATTCCCGAAAGCTTTCCCATTAATCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCTTCCACATCCTCCCTGCGGTGTTTGCGGTTGGCACGATCGACTCGTGGATTCGTTGGAGACCAGGATAACGAGTCACACCAGTCACGTCCGAGATAAAAGTGACGATAGAGTACCATTATTCCGTAGATGGTTCTGAAAGTTTTTTTTTCAGTTTTTTTTTTCAAAAAAATTCGGAATGCGTTAAAGACTAATCAAGATAAGCAACTTACAAGAAAAATAGGACGACACCTCCTAAGGTAAGCAGCGATCCAGTAATCGATTCGAAATCTTCCTTAGCCATGCTGGCGACGACAACAACTGGAGTCATGACGCTGTAGAAACAAAAAAGATGAAGTGGTATGCGTGTGTGTGGTTGTTTCGCCTTGCTCGGCGCCCCAGCGGCCGACTCGAAGACTTTTTTGTTGGCATTCAAGGTCGTAAATTTACCCCTTTATTACACTCCTAGACATTCCCATGACAACGATTGCAAGTTCAGAAGAGCTGACTAAATAGAAGAATCGTAAATTTTGTAAA</canonical>
            <polymorphic>TTACAATTTTTTCGAGAATACACCGAAAAAAATAAACCGTAAAATTAAAAACCGTCGCTTTTTTTCCAAGATTCATTTTTTCTAAAAATCCATCGCAATAGTGTTTCGTATTGAGATCAAAGTATGTTTCTTTTCTTGCTTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAAAACACAAATAAACCCAATTAACCTATCAAAGATCTTCATTCCCGAAAGCTTTCCCATTAATCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCTTCCACATCCTCCMTGCGGTGTTTGCGGTTGGCACGATCGACTCGTGGATTCGTTGGAGACCAGGATAACGAGTCACACCAGTCACGTCCGAGATAAAAGTGACGATAGAGTACCATTATTCCGTAGATGGTTCTGAAAGTTTTTTTTTCAGTTTTTTTTTTCAAAAAAATTCGGAATGCGTTAAAGACTAATCAAGATAAGCAACTTACAAGAAAAATAGGACGACACCTCCTAAGGTAAGCAGCGATCCAGTAATCGATTCGAAATCTTCCTTAGCCATGCTGGCGACGACAACAACTGGAGTCATGACGCTGTAGAAACAAAAAAGATGAAGTGGTATGCGTGTGTGTGGTTGTTTCGCCTTGCTCGGCGCCCCAGCGGCCGACTCGAAGACTTTTTTGTTGGCATTCAAGGTCGTAAATTTACCCCTTTATTACACTCCTAGACATTCCCATGACAACGATTGCAAGTTCAGAAGAGCTGACTAAATAGAAGAATCGTAAATTTTGTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAATTTTATTAACGGATTTCAA</pcr_primer_p1>
		<pcr_primer_p2>TACGGAATAATGGTACTCTATCG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACAATTTTATTAACGGATTTCAAAAACACAAATAAACCCAATTAACCTATCAAAGATCTTCATTCCCGAAAGCTTTCCCATTAATCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCTTCCACATCCTCCCTGCGGTGTTTGCGGTTGGCACGATCGACTCGTGGATTCGTTGGAGACCAGGATAACGAGTCACACCAGTCACGTCCGAGATAAAAGTGACGATAGAGTACCATTATTCCGTA</canonical_amplicon>
		<polymorphic_amplicon>ACAATTTTATTAACGGATTTCAAAAACACAAATAAACCCAATTAACCTATCAAAGATCTTCATTCCCGAAAGCTTTCCCATTAATCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCTTCCACATCCTCCMTGCGGTGTTTGCGGTTGGCACGATCGACTCGTGGATTCGTTGGAGACCAGGATAACGAGTCACACCAGTCACGTCCGAGATAAAAGTGACGATAGAGTACCATTATTCCGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24984</snp_id>
        <super_contig>c001001052.Contig1</super_contig>
        <contig_pos>1736706</contig_pos>
        <strand>+</strand>
        <context>TCGTTGGAGA[C/G]CAGGATAACG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCCCTGCGGTGTTTGCGGTTGGCACGATCGACTCGTGGATTCGTTGGAGA</left_flank>
        <right_flank>CAGGATAACGAGTCACACCAGTCACGTCCGAGATAAAAGTGACGATAGAG</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACCGTCGCTTTTTTTCCAAGATTCATTTTTTCTAAAAATCCATCGCAATAGTGTTTCGTATTGAGATCAAAGTATGTTTCTTTTCTTGCTTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAAAACACAAATAAACCCAATTAACCTATCAAAGATCTTCATTCCCGAAAGCTTTCCCATTAATCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCTTCCACATCCTCCCTGCGGTGTTTGCGGTTGGCACGATCGACTCGTGGATTCGTTGGAGACCAGGATAACGAGTCACACCAGTCACGTCCGAGATAAAAGTGACGATAGAGTACCATTATTCCGTAGATGGTTCTGAAAGTTTTTTTTTCAGTTTTTTTTTTCAAAAAAATTCGGAATGCGTTAAAGACTAATCAAGATAAGCAACTTACAAGAAAAATAGGACGACACCTCCTAAGGTAAGCAGCGATCCAGTAATCGATTCGAAATCTTCCTTAGCCATGCTGGCGACGACAACAACTGGAGTCATGACGCTGTAGAAACAAAAAAGATGAAGTGGTATGCGTGTGTGTGGTTGTTTCGCCTTGCTCGGCGCCCCAGCGGCCGACTCGAAGACTTTTTTGTTGGCATTCAAGGTCGTAAATTTACCCCTTTATTACACTCCTAGACATTCCCATGACAACGATTGCAAGTTCAGAAGAGCTGACTAAATAGAAGAATCGTAAATTTTGTAAATGGAAATAACTAGAGAGCGCATGAAAGAGAGGGAGAGATTTAGAGAA</canonical>
            <polymorphic>AAAACCGTCGCTTTTTTTCCAAGATTCATTTTTTCTAAAAATCCATCGCAATAGTGTTTCGTATTGAGATCAAAGTATGTTTCTTTTCTTGCTTTTTCGTTTCTGTGTAGATTTCAGAATTTCAGACATCCACAAAAATATCTAAATTGATGTTTTTAATAGAAAAGTGATGTATGTTCTAACTGATTTTTTGACATATTTTTTCCTGAGAGCTTGATTCTATTGGAGGTTGAAAAATTCAGGAGGGACTTTATCCAGAAAAACTTCCCAAATTTTGAAAAATATCATTTTGTATATCTAATTACAAAGATGAAATCCACAATTTTATTAACGGATTTCAAAAACACAAATAAACCCAATTAACCTATCAAAGATCTTCATTCCCGAAAGCTTTCCCATTAATCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCTTCCACATCCTCCCTGCGGTGTTTGCGGTTGGCACGATCGACTCGTGGATTCGTTGGAGASCAGGATAACGAGTCACACCAGTCACGTCCGAGATAAAAGTGACGATAGAGTACCATTATTCCGTAGATGGTTCTGAAAGTTTTTTTTTCAGTTTTTTTTTTCAAAAAAATTCGGAATGCGTTAAAGACTAATCAAGATAAGCAACTTACAAGAAAAATAGGACGACACCTCCTAAGGTAAGCAGCGATCCAGTAATCGATTCGAAATCTTCCTTAGCCATGCTGGCGACGACAACAACTGGAGTCATGACGCTGTAGAAACAAAAAAGATGAAGTGGTATGCGTGTGTGTGGTTGTTTCGCCTTGCTCGGCGCCCCAGCGGCCGACTCGAAGACTTTTTTGTTGGCATTCAAGGTCGTAAATTTACCCCTTTATTACACTCCTAGACATTCCCATGACAACGATTGCAAGTTCAGAAGAGCTGACTAAATAGAAGAATCGTAAATTTTGTAAATGGAAATAACTAGAGAGCGCATGAAAGAGAGGGAGAGATTTAGAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAATTTTATTAACGGATTTCAA</pcr_primer_p1>
		<pcr_primer_p2>TACGGAATAATGGTACTCTATCG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACAATTTTATTAACGGATTTCAAAAACACAAATAAACCCAATTAACCTATCAAAGATCTTCATTCCCGAAAGCTTTCCCATTAATCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCTTCCACATCCTCCCTGCGGTGTTTGCGGTTGGCACGATCGACTCGTGGATTCGTTGGAGACCAGGATAACGAGTCACACCAGTCACGTCCGAGATAAAAGTGACGATAGAGTACCATTATTCCGTA</canonical_amplicon>
		<polymorphic_amplicon>ACAATTTTATTAACGGATTTCAAAAACACAAATAAACCCAATTAACCTATCAAAGATCTTCATTCCCGAAAGCTTTCCCATTAATCTGGAATCGCACCACTGTTGCCTTTTTTGGGGTCGCTTCCACATCCTCCCTGCGGTGTTTGCGGTTGGCACGATCGACTCGTGGATTCGTTGGAGASCAGGATAACGAGTCACACCAGTCACGTCCGAGATAAAAGTGACGATAGAGTACCATTATTCCGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24985</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>10465</contig_pos>
        <strand></strand>
        <context>ACAAAGTCCA[A/G]CTATTTTAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATTTTTAGATCTCACACTCCATTTTCCTAGAATAAATTACAAAGTCCA</left_flank>
        <right_flank>CTATTTTAGACCTTGGAAACCCAATTTTACTGGCAATTTCCAGCTTCCAG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTAGCCCTTGAAACCTCAAAAAACAATTCCTGGGGATTTTCAAAGCCCATTTCTGACCTATTTTTAAGCGAAAAATGACCAACAAAATGGCCAATTCGGGATCCAAGAGTCCAAAAAACACAAATTTTGGCCATTTTCAGACATTTTCTAGCCAAAAAATGACTGCTTAAGCCTCAAAAATCACGAATTTCGGCCATTTTTCCGCCGCTTCCAGACATTTCAATGGCAAAAAGGCTTTTGAAAACGCTCACCCAAATAATCATCGGAATGCTCGAAACAGGCGTCACGATAGGCGAGGAATAGACAGGCGGCTTGTTCGGCAACGAGAAGCGAGCGAGTCAGAGGCATACAGTAGTCGAACAGGAGGTCGGATCTGAAATTTTCCATTGTTCCAGCTATTTTAGGCCTCGACAAGAGGCCAAAACTAGACCTAGACCCTCTAAAAACCAATTTTTAGATCTCACACTCCATTTTCCTAGAATAAATTACAAAGTCCAACTATTTTAGACCTTGGAAACCCAATTTTACTGGCAATTTCCAGCTTCCAGTCATTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATGTCGATGAAAATTTCAGGAAATGTCAAGGATAGACATCCCTGAAAATTTTAGAACACGCTCGCCAATTTCAGCAGAGTTATATCAGTTCAAAGTTTTAGTACTGAAATCCGTTGATTTGCATGCTTTACCACACATTCCATCCCCGAAATCCCTTTAAAACGAGTTTGAAGAGGGCCTGACATTTTACCGCCTTTCGAATCAAAAGTAAATCGCCGTGGTGTCGGGGATGTGGTGGGCGCCAGTAGTCACAAGGCTGTGGGTTCTCTAGTGCTTTTTCTTTGTTTTTCTTATTTTTTCTTATTTTGCGACATTTCAGGATCCCTCTGACATATGTTTCAAAATTTTATCAATTCAAGAGAGTATAGACAAAATTAAGGAAAACAATTTTTTTCAAAAATCTTCCAAAGGT</canonical>
            <polymorphic>TTCTAGCCCTTGAAACCTCAAAAAACAATTCCTGGGGATTTTCAAAGCCCATTTCTGACCTATTTTTAAGCGAAAAATGACCAACAAAATGGCCAATTCGGGATCCAAGAGTCCAAAAAACACAAATTTTGGCCATTTTCAGACATTTTCTAGCCAAAAAATGACTGCTTAAGCCTCAAAAATCACGAATTTCGGCCATTTTTCCGCCGCTTCCAGACATTTCAATGGCAAAAAGGCTTTTGAAAACGCTCACCCAAATAATCATCGGAATGCTCGAAACAGGCGTCACGATAGGCGAGGAATAGACAGGCGGCTTGTTCGGCAACGAGAAGCGAGCGAGTCAGAGGCATACAGTAGTCGAACAGGAGGTCGGATCTGAAATTTTCCATTGTTCCAGCTATTTTAGGCCTCGACAAGAGGCCAAAACTAGACCTAGACCCTCTAAAAACCAATTTTTAGATCTCACACTCCATTTTCCTAGAATAAATTACAAAGTCCARCTATTTTAGACCTTGGAAACCCAATTTTACTGGCAATTTCCAGCTTCCAGTCATTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATGTCGATGAAAATTTCAGGAAATGTCAAGGATAGACATCCCTGAAAATTTTAGAACACGCTCGCCAATTTCAGCAGAGTTATATCAGTTCAAAGTTTTAGTACTGAAATCCGTTGATTTGCATGCTTTACCACACATTCCATCCCCGAAATCCCTTTAAAACGAGTTTGAAGAGGGCCTGACATTTTACCGCCTTTCGAATCAAAAGTAAATCGCCGTGGTGTCGGGGATGTGGTGGGCGCCAGTAGTCACAAGGCTGTGGGTTCTCTAGTGCTTTTTCTTTGTTTTTCTTATTTTTTCTTATTTTGCGACATTTCAGGATCCCTCTGACATATGTTTCAAAATTTTATCAATTCAAGAGAGTATAGACAAAATTAAGGAAAACAATTTTTTTCAAAAATCTTCCAAAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTAGGCCTCGACAAGA</pcr_primer_p1>
		<pcr_primer_p2>GTTCTAAAATTTTCAGGGATGTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TATTTTAGGCCTCGACAAGAGGCCAAAACTAGACCTAGACCCTCTAAAAACCAATTTTTAGATCTCACACTCCATTTTCCTAGAATAAATTACAAAGTCCAACTATTTTAGACCTTGGAAACCCAATTTTACTGGCAATTTCCAGCTTCCAGTCATTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATGTCGATGAAAATTTCAGGAAATGTCAAGGATAGACATCCCTGAAAATTTTAGAAC</canonical_amplicon>
		<polymorphic_amplicon>TATTTTAGGCCTCGACAAGAGGCCAAAACTAGACCTAGACCCTCTAAAAACCAATTTTTAGATCTCACACTCCATTTTCCTAGAATAAATTACAAAGTCCARCTATTTTAGACCTTGGAAACCCAATTTTACTGGCAATTTCCAGCTTCCAGTCATTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATGTCGATGAAAATTTCAGGAAATGTCAAGGATAGACATCCCTGAAAATTTTAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24986</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>10556</contig_pos>
        <strand></strand>
        <context>CAGTTTGGAT[G/T]TCGATGAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAGCTTCCAGTCATTTTACAAGGGAACGACAACACCTCGTCAGTTTGGAT</left_flank>
        <right_flank>TCGATGAAAATTTCAGGAAATGTCAAGGATAGACATCCCTGAAAATTTTA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCAATTCGGGATCCAAGAGTCCAAAAAACACAAATTTTGGCCATTTTCAGACATTTTCTAGCCAAAAAATGACTGCTTAAGCCTCAAAAATCACGAATTTCGGCCATTTTTCCGCCGCTTCCAGACATTTCAATGGCAAAAAGGCTTTTGAAAACGCTCACCCAAATAATCATCGGAATGCTCGAAACAGGCGTCACGATAGGCGAGGAATAGACAGGCGGCTTGTTCGGCAACGAGAAGCGAGCGAGTCAGAGGCATACAGTAGTCGAACAGGAGGTCGGATCTGAAATTTTCCATTGTTCCAGCTATTTTAGGCCTCGACAAGAGGCCAAAACTAGACCTAGACCCTCTAAAAACCAATTTTTAGATCTCACACTCCATTTTCCTAGAATAAATTACAAAGTCCAACTATTTTAGACCTTGGAAACCCAATTTTACTGGCAATTTCCAGCTTCCAGTCATTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATGTCGATGAAAATTTCAGGAAATGTCAAGGATAGACATCCCTGAAAATTTTAGAACACGCTCGCCAATTTCAGCAGAGTTATATCAGTTCAAAGTTTTAGTACTGAAATCCGTTGATTTGCATGCTTTACCACACATTCCATCCCCGAAATCCCTTTAAAACGAGTTTGAAGAGGGCCTGACATTTTACCGCCTTTCGAATCAAAAGTAAATCGCCGTGGTGTCGGGGATGTGGTGGGCGCCAGTAGTCACAAGGCTGTGGGTTCTCTAGTGCTTTTTCTTTGTTTTTCTTATTTTTTCTTATTTTGCGACATTTCAGGATCCCTCTGACATATGTTTCAAAATTTTATCAATTCAAGAGAGTATAGACAAAATTAAGGAAAACAATTTTTTTCAAAAATCTTCCAAAGGTTTGAATACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAAGTG</canonical>
            <polymorphic>GCCAATTCGGGATCCAAGAGTCCAAAAAACACAAATTTTGGCCATTTTCAGACATTTTCTAGCCAAAAAATGACTGCTTAAGCCTCAAAAATCACGAATTTCGGCCATTTTTCCGCCGCTTCCAGACATTTCAATGGCAAAAAGGCTTTTGAAAACGCTCACCCAAATAATCATCGGAATGCTCGAAACAGGCGTCACGATAGGCGAGGAATAGACAGGCGGCTTGTTCGGCAACGAGAAGCGAGCGAGTCAGAGGCATACAGTAGTCGAACAGGAGGTCGGATCTGAAATTTTCCATTGTTCCAGCTATTTTAGGCCTCGACAAGAGGCCAAAACTAGACCTAGACCCTCTAAAAACCAATTTTTAGATCTCACACTCCATTTTCCTAGAATAAATTACAAAGTCCAACTATTTTAGACCTTGGAAACCCAATTTTACTGGCAATTTCCAGCTTCCAGTCATTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATKTCGATGAAAATTTCAGGAAATGTCAAGGATAGACATCCCTGAAAATTTTAGAACACGCTCGCCAATTTCAGCAGAGTTATATCAGTTCAAAGTTTTAGTACTGAAATCCGTTGATTTGCATGCTTTACCACACATTCCATCCCCGAAATCCCTTTAAAACGAGTTTGAAGAGGGCCTGACATTTTACCGCCTTTCGAATCAAAAGTAAATCGCCGTGGTGTCGGGGATGTGGTGGGCGCCAGTAGTCACAAGGCTGTGGGTTCTCTAGTGCTTTTTCTTTGTTTTTCTTATTTTTTCTTATTTTGCGACATTTCAGGATCCCTCTGACATATGTTTCAAAATTTTATCAATTCAAGAGAGTATAGACAAAATTAAGGAAAACAATTTTTTTCAAAAATCTTCCAAAGGTTTGAATACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTAGGCCTCGACAAGA</pcr_primer_p1>
		<pcr_primer_p2>GTTCTAAAATTTTCAGGGATGTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TATTTTAGGCCTCGACAAGAGGCCAAAACTAGACCTAGACCCTCTAAAAACCAATTTTTAGATCTCACACTCCATTTTCCTAGAATAAATTACAAAGTCCAACTATTTTAGACCTTGGAAACCCAATTTTACTGGCAATTTCCAGCTTCCAGTCATTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATGTCGATGAAAATTTCAGGAAATGTCAAGGATAGACATCCCTGAAAATTTTAGAAC</canonical_amplicon>
		<polymorphic_amplicon>TATTTTAGGCCTCGACAAGAGGCCAAAACTAGACCTAGACCCTCTAAAAACCAATTTTTAGATCTCACACTCCATTTTCCTAGAATAAATTACAAAGTCCAACTATTTTAGACCTTGGAAACCCAATTTTACTGGCAATTTCCAGCTTCCAGTCATTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATKTCGATGAAAATTTCAGGAAATGTCAAGGATAGACATCCCTGAAAATTTTAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24987</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>10575</contig_pos>
        <strand></strand>
        <context>AATTTCAGGA[A/T]ATGTCAAGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGGGAACGACAACACCTCGTCAGTTTGGATGTCGATGAAAATTTCAGGA</left_flank>
        <right_flank>ATGTCAAGGATAGACATCCCTGAAAATTTTAGAACACGCTCGCCAATTTC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCAAAAAACACAAATTTTGGCCATTTTCAGACATTTTCTAGCCAAAAAATGACTGCTTAAGCCTCAAAAATCACGAATTTCGGCCATTTTTCCGCCGCTTCCAGACATTTCAATGGCAAAAAGGCTTTTGAAAACGCTCACCCAAATAATCATCGGAATGCTCGAAACAGGCGTCACGATAGGCGAGGAATAGACAGGCGGCTTGTTCGGCAACGAGAAGCGAGCGAGTCAGAGGCATACAGTAGTCGAACAGGAGGTCGGATCTGAAATTTTCCATTGTTCCAGCTATTTTAGGCCTCGACAAGAGGCCAAAACTAGACCTAGACCCTCTAAAAACCAATTTTTAGATCTCACACTCCATTTTCCTAGAATAAATTACAAAGTCCAACTATTTTAGACCTTGGAAACCCAATTTTACTGGCAATTTCCAGCTTCCAGTCATTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATGTCGATGAAAATTTCAGGAAATGTCAAGGATAGACATCCCTGAAAATTTTAGAACACGCTCGCCAATTTCAGCAGAGTTATATCAGTTCAAAGTTTTAGTACTGAAATCCGTTGATTTGCATGCTTTACCACACATTCCATCCCCGAAATCCCTTTAAAACGAGTTTGAAGAGGGCCTGACATTTTACCGCCTTTCGAATCAAAAGTAAATCGCCGTGGTGTCGGGGATGTGGTGGGCGCCAGTAGTCACAAGGCTGTGGGTTCTCTAGTGCTTTTTCTTTGTTTTTCTTATTTTTTCTTATTTTGCGACATTTCAGGATCCCTCTGACATATGTTTCAAAATTTTATCAATTCAAGAGAGTATAGACAAAATTAAGGAAAACAATTTTTTTCAAAAATCTTCCAAAGGTTTGAATACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAAGTGGTTAACTAGTAAAATGTTT</canonical>
            <polymorphic>GTCCAAAAAACACAAATTTTGGCCATTTTCAGACATTTTCTAGCCAAAAAATGACTGCTTAAGCCTCAAAAATCACGAATTTCGGCCATTTTTCCGCCGCTTCCAGACATTTCAATGGCAAAAAGGCTTTTGAAAACGCTCACCCAAATAATCATCGGAATGCTCGAAACAGGCGTCACGATAGGCGAGGAATAGACAGGCGGCTTGTTCGGCAACGAGAAGCGAGCGAGTCAGAGGCATACAGTAGTCGAACAGGAGGTCGGATCTGAAATTTTCCATTGTTCCAGCTATTTTAGGCCTCGACAAGAGGCCAAAACTAGACCTAGACCCTCTAAAAACCAATTTTTAGATCTCACACTCCATTTTCCTAGAATAAATTACAAAGTCCAACTATTTTAGACCTTGGAAACCCAATTTTACTGGCAATTTCCAGCTTCCAGTCATTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATGTCGATGAAAATTTCAGGAWATGTCAAGGATAGACATCCCTGAAAATTTTAGAACACGCTCGCCAATTTCAGCAGAGTTATATCAGTTCAAAGTTTTAGTACTGAAATCCGTTGATTTGCATGCTTTACCACACATTCCATCCCCGAAATCCCTTTAAAACGAGTTTGAAGAGGGCCTGACATTTTACCGCCTTTCGAATCAAAAGTAAATCGCCGTGGTGTCGGGGATGTGGTGGGCGCCAGTAGTCACAAGGCTGTGGGTTCTCTAGTGCTTTTTCTTTGTTTTTCTTATTTTTTCTTATTTTGCGACATTTCAGGATCCCTCTGACATATGTTTCAAAATTTTATCAATTCAAGAGAGTATAGACAAAATTAAGGAAAACAATTTTTTTCAAAAATCTTCCAAAGGTTTGAATACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAAGTGGTTAACTAGTAAAATGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTAGACCTAGACCCTCTAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>ACTGATATAACTCTGCTGAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AACTAGACCTAGACCCTCTAAAAACCAATTTTTAGATCTCACACTCCATTTTCCTAGAATAAATTACAAAGTCCAACTATTTTAGACCTTGGAAACCCAATTTTACTGGCAATTTCCAGCTTCCAGTCATTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATGTCGATGAAAATTTCAGGAAATGTCAAGGATAGACATCCCTGAAAATTTTAGAACACGCTCGCCAATTTCAGCAGAGTTATATCAGT</canonical_amplicon>
		<polymorphic_amplicon>AACTAGACCTAGACCCTCTAAAAACCAATTTTTAGATCTCACACTCCATTTTCCTAGAATAAATTACAAAGTCCAACTATTTTAGACCTTGGAAACCCAATTTTACTGGCAATTTCCAGCTTCCAGTCATTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATGTCGATGAAAATTTCAGGAWATGTCAAGGATAGACATCCCTGAAAATTTTAGAACACGCTCGCCAATTTCAGCAGAGTTATATCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24988</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>10716</contig_pos>
        <strand></strand>
        <context>ccctttaaaa[C/G]gagtttgaag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTTGATTTGCATGCTTTACCACACATTCCATCCCCGAAATCCCTTTAAAA</left_flank>
        <right_flank>GAGTTTGAAGAGGGCCTGACATTTTACCGCCTTTCGAATCAAAAGTAAAT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCCAAATAATCATCGGAATGCTCGAAACAGGCGTCACGATAGGCGAGGAATAGACAGGCGGCTTGTTCGGCAACGAGAAGCGAGCGAGTCAGAGGCATACAGTAGTCGAACAGGAGGTCGGATCTGAAATTTTCCATTGTTCCAGCTATTTTAGGCCTCGACAAGAGGCCAAAACTAGACCTAGACCCTCTAAAAACCAATTTTTAGATCTCACACTCCATTTTCCTAGAATAAATTACAAAGTCCAACTATTTTAGACCTTGGAAACCCAATTTTACTGGCAATTTCCAGCTTCCAGTCATTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATGTCGATGAAAATTTCAGGAAATGTCAAGGATAGACATCCCTGAAAATTTTAGAACACGCTCGCCAATTTCAGCAGAGTTATATCAGTTCAAAGTTTTAGTACTGAAATCCGTTGATTTGCATGCTTTACCACACATTCCATCCCCGAAATCCCTTTAAAACGAGTTTGAAGAGGGCCTGACATTTTACCGCCTTTCGAATCAAAAGTAAATCGCCGTGGTGTCGGGGATGTGGTGGGCGCCAGTAGTCACAAGGCTGTGGGTTCTCTAGTGCTTTTTCTTTGTTTTTCTTATTTTTTCTTATTTTGCGACATTTCAGGATCCCTCTGACATATGTTTCAAAATTTTATCAATTCAAGAGAGTATAGACAAAATTAAGGAAAACAATTTTTTTCAAAAATCTTCCAAAGGTTTGAATACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAAGTGGTTAACTAGTAAAATGTTTATCAGGATATCAGCAACATTTTACTAGTTAGCCACTTTTTGATATCTTTGGCAGAAAATGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGAAGTTCTGGAATGTGGTGGTTTTGA</canonical>
            <polymorphic>ACCCAAATAATCATCGGAATGCTCGAAACAGGCGTCACGATAGGCGAGGAATAGACAGGCGGCTTGTTCGGCAACGAGAAGCGAGCGAGTCAGAGGCATACAGTAGTCGAACAGGAGGTCGGATCTGAAATTTTCCATTGTTCCAGCTATTTTAGGCCTCGACAAGAGGCCAAAACTAGACCTAGACCCTCTAAAAACCAATTTTTAGATCTCACACTCCATTTTCCTAGAATAAATTACAAAGTCCAACTATTTTAGACCTTGGAAACCCAATTTTACTGGCAATTTCCAGCTTCCAGTCATTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATGTCGATGAAAATTTCAGGAAATGTCAAGGATAGACATCCCTGAAAATTTTAGAACACGCTCGCCAATTTCAGCAGAGTTATATCAGTTCAAAGTTTTAGTACTGAAATCCGTTGATTTGCATGCTTTACCACACATTCCATCCCCGAAATCCCTTTAAAASGAGTTTGAAGAGGGCCTGACATTTTACCGCCTTTCGAATCAAAAGTAAATCGCCGTGGTGTCGGGGATGTGGTGGGCGCCAGTAGTCACAAGGCTGTGGGTTCTCTAGTGCTTTTTCTTTGTTTTTCTTATTTTTTCTTATTTTGCGACATTTCAGGATCCCTCTGACATATGTTTCAAAATTTTATCAATTCAAGAGAGTATAGACAAAATTAAGGAAAACAATTTTTTTCAAAAATCTTCCAAAGGTTTGAATACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAAGTGGTTAACTAGTAAAATGTTTATCAGGATATCAGCAACATTTTACTAGTTAGCCACTTTTTGATATCTTTGGCAGAAAATGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGAAGTTCTGGAATGTGGTGGTTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTTCAGCAGAGTTATATCAGTT</pcr_primer_p1>
		<pcr_primer_p2>CATCCCTGAAAATTTTAGAACA</pcr_primer_p2>
		<pcr_amplicon_size>997</pcr_amplicon_size>
		<canonical_amplicon>CAATTTCAGCAGAGTTATATCAGTTCAAAGTTTTAGTACTGAAATCCGTTGATTTGCATGCTTTACCACACATTCCATCCCCGAAATCCCTTTAAAACGAGTTTGAAGAGGGCCTGACA</canonical_amplicon>
		<polymorphic_amplicon>CAATTTCAGCAGAGTTATATCAGTTCAAAGTTTTAGTACTGAAATCCGTTGATTTGCATGCTTTACCACACATTCCATCCCCGAAATCCCTTTAAAASGAGTTTGAAGAGGGCCTGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24989</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>10734</contig_pos>
        <strand></strand>
        <context>aagagggcct[G/A]acattttacc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CCACACATTCCATCCCCGAAATCCCTTTAAAACGAGTTTGAAGAGGGCCT</left_flank>
        <right_flank>ACATTTTACCGCCTTTCGAATCAAAAGTAAATCGCCGTGGTGTCGGGGAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCTCGAAACAGGCGTCACGATAGGCGAGGAATAGACAGGCGGCTTGTTCGGCAACGAGAAGCGAGCGAGTCAGAGGCATACAGTAGTCGAACAGGAGGTCGGATCTGAAATTTTCCATTGTTCCAGCTATTTTAGGCCTCGACAAGAGGCCAAAACTAGACCTAGACCCTCTAAAAACCAATTTTTAGATCTCACACTCCATTTTCCTAGAATAAATTACAAAGTCCAACTATTTTAGACCTTGGAAACCCAATTTTACTGGCAATTTCCAGCTTCCAGTCATTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATGTCGATGAAAATTTCAGGAAATGTCAAGGATAGACATCCCTGAAAATTTTAGAACACGCTCGCCAATTTCAGCAGAGTTATATCAGTTCAAAGTTTTAGTACTGAAATCCGTTGATTTGCATGCTTTACCACACATTCCATCCCCGAAATCCCTTTAAAACGAGTTTGAAGAGGGCCTGACATTTTACCGCCTTTCGAATCAAAAGTAAATCGCCGTGGTGTCGGGGATGTGGTGGGCGCCAGTAGTCACAAGGCTGTGGGTTCTCTAGTGCTTTTTCTTTGTTTTTCTTATTTTTTCTTATTTTGCGACATTTCAGGATCCCTCTGACATATGTTTCAAAATTTTATCAATTCAAGAGAGTATAGACAAAATTAAGGAAAACAATTTTTTTCAAAAATCTTCCAAAGGTTTGAATACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAAGTGGTTAACTAGTAAAATGTTTATCAGGATATCAGCAACATTTTACTAGTTAGCCACTTTTTGATATCTTTGGCAGAAAATGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGAAGTTCTGGAATGTGGTGGTTTTGAAGCTCTGTTTTTGGACCT</canonical>
            <polymorphic>ATGCTCGAAACAGGCGTCACGATAGGCGAGGAATAGACAGGCGGCTTGTTCGGCAACGAGAAGCGAGCGAGTCAGAGGCATACAGTAGTCGAACAGGAGGTCGGATCTGAAATTTTCCATTGTTCCAGCTATTTTAGGCCTCGACAAGAGGCCAAAACTAGACCTAGACCCTCTAAAAACCAATTTTTAGATCTCACACTCCATTTTCCTAGAATAAATTACAAAGTCCAACTATTTTAGACCTTGGAAACCCAATTTTACTGGCAATTTCCAGCTTCCAGTCATTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATGTCGATGAAAATTTCAGGAAATGTCAAGGATAGACATCCCTGAAAATTTTAGAACACGCTCGCCAATTTCAGCAGAGTTATATCAGTTCAAAGTTTTAGTACTGAAATCCGTTGATTTGCATGCTTTACCACACATTCCATCCCCGAAATCCCTTTAAAACGAGTTTGAAGAGGGCCTRACATTTTACCGCCTTTCGAATCAAAAGTAAATCGCCGTGGTGTCGGGGATGTGGTGGGCGCCAGTAGTCACAAGGCTGTGGGTTCTCTAGTGCTTTTTCTTTGTTTTTCTTATTTTTTCTTATTTTGCGACATTTCAGGATCCCTCTGACATATGTTTCAAAATTTTATCAATTCAAGAGAGTATAGACAAAATTAAGGAAAACAATTTTTTTCAAAAATCTTCCAAAGGTTTGAATACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAAGTGGTTAACTAGTAAAATGTTTATCAGGATATCAGCAACATTTTACTAGTTAGCCACTTTTTGATATCTTTGGCAGAAAATGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGAAGTTCTGGAATGTGGTGGTTTTGAAGCTCTGTTTTTGGACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTTCAGCAGAGTTATATCAGTT</pcr_primer_p1>
		<pcr_primer_p2>CATCCCTGAAAATTTTAGAACA</pcr_primer_p2>
		<pcr_amplicon_size>997</pcr_amplicon_size>
		<canonical_amplicon>CAATTTCAGCAGAGTTATATCAGTTCAAAGTTTTAGTACTGAAATCCGTTGATTTGCATGCTTTACCACACATTCCATCCCCGAAATCCCTTTAAAACGAGTTTGAAGAGGGCCTGACATTTTACCGCCTTTCGAAT</canonical_amplicon>
		<polymorphic_amplicon>CAATTTCAGCAGAGTTATATCAGTTCAAAGTTTTAGTACTGAAATCCGTTGATTTGCATGCTTTACCACACATTCCATCCCCGAAATCCCTTTAAAACGAGTTTGAAGAGGGCCTRACATTTTACCGCCTTTCGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24990</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>13108</contig_pos>
        <strand>+</strand>
        <context>CTTCCAGAGC[A/T]TTYTTTCAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTCTGGATTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGC</left_flank>
        <right_flank>TTCTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTC</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCCAATCTGGCCAGAATACCAAAAGGGAGAGGGACTTGAGAGCGGGTTGAGAGAAGTTCGGAGCGGCTGTCTTGTCGATGACTGGACGATCAAGGATCACGATTTCCACGAGCTTGGTCCAGGCGACAGCTTCTTGCCATTTGGTTTGGGAGAGTGGTTTTTCCTGGAAAAACGAGTTTTTTAATGAAATTTTCCATAATTTCAGTTACATTCTGTCTATTTTGAGCTCGATTTCTCTAGTTCCAGGTCCCAAAATGCAGAATTTTTTGAGCCAAAAATCGTTATTTTTCCCTAAAATTTTCAGAATTTCATCTCCACTCTCTCTATTTTTTGAGCACAATTTCCATGACTTCAGCTATGAAGCGCTCTATTTCTAATCCCAATTTCTCTAGTTTCAGAGCCAAAACCTCTTATTTTAAGACTCTAATTTCTTAGCCTTGGACCCAAATTTCTGGATTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCATTCTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAATTAGCGTTCCCACTTCTTATACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATCCTTTTTCTCTTCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTTTATTATCTTCCAATTAGCTTCGTCCAGGTAATCCTACCTAATGACTACACCGTTGATTACCCAGCACCTCTTGCAGAACATCTGGTGGTCATCTAATCCCAACTAGCCAAAATCTATCTATCTCATCAGCTGCCAGCTGTGGAGTCCGGGTCATCTTGTGCCTGTTGCGTCGTAGGGGTCACCAGTGTTCTTCTCTGTCATCCACGCGCGCGCGGGCACATTGGACATATGGTGGTAAGAAGAAGAAGAAGGTGGTGATGTCATCTTATCTGGCACCAAGTCTTCGGGTCAGGGACGAA</canonical>
            <polymorphic>TCTCCAATCTGGCCAGAATACCAAAAGGGAGAGGGACTTGAGAGCGGGTTGAGAGAAGTTCGGAGCGGCTGTCTTGTCGATGACTGGACGATCAAGGATCACGATTTCCACGAGCTTGGTCCAGGCGACAGCTTCTTGCCATTTGGTTTGGGAGAGTGGTTTTTCCTGGAAAAACGAGTTTTTTAATGAAATTTTCCATAATTTCAGTTACATTCTGTCTATTTTGAGCTCGATTTCTCTAGTTCCAGGTCCCAAAATGCAGAATTTTTTGAGCCAAAAATCGTTATTTTTCCCTAAAATTTTCAGAATTTCATCTCCACTCTCTCTATTTTTTGAGCACAATTTCCATGACTTCAGCTATGAAGCGCTCTATTTCTAATCCCAATTTCTCTAGTTTCAGAGCCAAAACCTCTTATTTTAAGACTCTAATTTCTTAGCCTTGGACCCAAATTTCTGGATTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCWTTCTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAATTAGCGTTCCCACTTCTTATACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATCCTTTTTCTCTTCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTTTATTATCTTCCAATTAGCTTCGTCCAGGTAATCCTACCTAATGACTACACCGTTGATTACCCAGCACCTCTTGCAGAACATCTGGTGGTCATCTAATCCCAACTAGCCAAAATCTATCTATCTCATCAGCTGCCAGCTGTGGAGTCCGGGTCATCTTGTGCCTGTTGCGTCGTAGGGGTCACCAGTGTTCTTCTCTGTCATCCACGCGCGCGCGGGCACATTGGACATATGGTGGTAAGAAGAAGAAGAAGGTGGTGATGTCATCTTATCTGGCACCAAGTCTTCGGGTCAGGGACGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTTCATCTCCACTCTCTCTA</pcr_primer_p1>
		<pcr_primer_p2>CATAGGAAGTCCAAGAAATGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATTTCATCTCCACTCTCTCTATTTTTTGAGCACAATTTCCATGACTTCAGCTATGAAGCGCTCTATTTCTAATCCCAATTTCTCTAGTTTCAGAGCCAAAACCTCTTATTTTAAGACTCTAATTTCTTAGCCTTGGACCCAAATTTCTGGATTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCATTCTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTATG</canonical_amplicon>
		<polymorphic_amplicon>GAATTTCATCTCCACTCTCTCTATTTTTTGAGCACAATTTCCATGACTTCAGCTATGAAGCGCTCTATTTCTAATCCCAATTTCTCTAGTTTCAGAGCCAAAACCTCTTATTTTAAGACTCTAATTTCTTAGCCTTGGACCCAAATTTCTGGATTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCWTTCTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24991</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>13111</contig_pos>
        <strand>+</strand>
        <context>CCAGAGCWTT[C/T]TTTCAATCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTGGATTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCATT</left_flank>
        <right_flank>TTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTA</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAATCTGGCCAGAATACCAAAAGGGAGAGGGACTTGAGAGCGGGTTGAGAGAAGTTCGGAGCGGCTGTCTTGTCGATGACTGGACGATCAAGGATCACGATTTCCACGAGCTTGGTCCAGGCGACAGCTTCTTGCCATTTGGTTTGGGAGAGTGGTTTTTCCTGGAAAAACGAGTTTTTTAATGAAATTTTCCATAATTTCAGTTACATTCTGTCTATTTTGAGCTCGATTTCTCTAGTTCCAGGTCCCAAAATGCAGAATTTTTTGAGCCAAAAATCGTTATTTTTCCCTAAAATTTTCAGAATTTCATCTCCACTCTCTCTATTTTTTGAGCACAATTTCCATGACTTCAGCTATGAAGCGCTCTATTTCTAATCCCAATTTCTCTAGTTTCAGAGCCAAAACCTCTTATTTTAAGACTCTAATTTCTTAGCCTTGGACCCAAATTTCTGGATTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCATTCTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAATTAGCGTTCCCACTTCTTATACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATCCTTTTTCTCTTCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTTTATTATCTTCCAATTAGCTTCGTCCAGGTAATCCTACCTAATGACTACACCGTTGATTACCCAGCACCTCTTGCAGAACATCTGGTGGTCATCTAATCCCAACTAGCCAAAATCTATCTATCTCATCAGCTGCCAGCTGTGGAGTCCGGGTCATCTTGTGCCTGTTGCGTCGTAGGGGTCACCAGTGTTCTTCTCTGTCATCCACGCGCGCGCGGGCACATTGGACATATGGTGGTAAGAAGAAGAAGAAGGTGGTGATGTCATCTTATCTGGCACCAAGTCTTCGGGTCAGGGACGAATGA</canonical>
            <polymorphic>CCAATCTGGCCAGAATACCAAAAGGGAGAGGGACTTGAGAGCGGGTTGAGAGAAGTTCGGAGCGGCTGTCTTGTCGATGACTGGACGATCAAGGATCACGATTTCCACGAGCTTGGTCCAGGCGACAGCTTCTTGCCATTTGGTTTGGGAGAGTGGTTTTTCCTGGAAAAACGAGTTTTTTAATGAAATTTTCCATAATTTCAGTTACATTCTGTCTATTTTGAGCTCGATTTCTCTAGTTCCAGGTCCCAAAATGCAGAATTTTTTGAGCCAAAAATCGTTATTTTTCCCTAAAATTTTCAGAATTTCATCTCCACTCTCTCTATTTTTTGAGCACAATTTCCATGACTTCAGCTATGAAGCGCTCTATTTCTAATCCCAATTTCTCTAGTTTCAGAGCCAAAACCTCTTATTTTAAGACTCTAATTTCTTAGCCTTGGACCCAAATTTCTGGATTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCATTYTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAATTAGCGTTCCCACTTCTTATACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATCCTTTTTCTCTTCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTTTATTATCTTCCAATTAGCTTCGTCCAGGTAATCCTACCTAATGACTACACCGTTGATTACCCAGCACCTCTTGCAGAACATCTGGTGGTCATCTAATCCCAACTAGCCAAAATCTATCTATCTCATCAGCTGCCAGCTGTGGAGTCCGGGTCATCTTGTGCCTGTTGCGTCGTAGGGGTCACCAGTGTTCTTCTCTGTCATCCACGCGCGCGCGGGCACATTGGACATATGGTGGTAAGAAGAAGAAGAAGGTGGTGATGTCATCTTATCTGGCACCAAGTCTTCGGGTCAGGGACGAATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTCTGGATTTTGAATACGA</pcr_primer_p1>
		<pcr_primer_p2>GCGGTGTAGTCATTAAAGTAGTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATTTCTGGATTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCATTCTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAATTAGCGTTCCCACTTCTTATACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATCCTTTTTCTCTTCCCACCTCTATTCTCACTACTTTAATGACTACACCGC</canonical_amplicon>
		<polymorphic_amplicon>AATTTCTGGATTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCATTYTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAATTAGCGTTCCCACTTCTTATACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATCCTTTTTCTCTTCCCACCTCTATTCTCACTACTTTAATGACTACACCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24992</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>13138</contig_pos>
        <strand>+</strand>
        <context>CTAGCACCAA[A/G]TGCCTCATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCAGAGAATCTTCCAGAGCATTCTTTCAATCTCCTGCTTCTAGCACCAA</left_flank>
        <right_flank>TGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGGGACTTGAGAGCGGGTTGAGAGAAGTTCGGAGCGGCTGTCTTGTCGATGACTGGACGATCAAGGATCACGATTTCCACGAGCTTGGTCCAGGCGACAGCTTCTTGCCATTTGGTTTGGGAGAGTGGTTTTTCCTGGAAAAACGAGTTTTTTAATGAAATTTTCCATAATTTCAGTTACATTCTGTCTATTTTGAGCTCGATTTCTCTAGTTCCAGGTCCCAAAATGCAGAATTTTTTGAGCCAAAAATCGTTATTTTTCCCTAAAATTTTCAGAATTTCATCTCCACTCTCTCTATTTTTTGAGCACAATTTCCATGACTTCAGCTATGAAGCGCTCTATTTCTAATCCCAATTTCTCTAGTTTCAGAGCCAAAACCTCTTATTTTAAGACTCTAATTTCTTAGCCTTGGACCCAAATTTCTGGATTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCATTCTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAATTAGCGTTCCCACTTCTTATACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATCCTTTTTCTCTTCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTTTATTATCTTCCAATTAGCTTCGTCCAGGTAATCCTACCTAATGACTACACCGTTGATTACCCAGCACCTCTTGCAGAACATCTGGTGGTCATCTAATCCCAACTAGCCAAAATCTATCTATCTCATCAGCTGCCAGCTGTGGAGTCCGGGTCATCTTGTGCCTGTTGCGTCGTAGGGGTCACCAGTGTTCTTCTCTGTCATCCACGCGCGCGCGGGCACATTGGACATATGGTGGTAAGAAGAAGAAGAAGGTGGTGATGTCATCTTATCTGGCACCAAGTCTTCGGGTCAGGGACGAATGACTGGTGTGTGCAATAGGATGATGGCGT</canonical>
            <polymorphic>GAGGGACTTGAGAGCGGGTTGAGAGAAGTTCGGAGCGGCTGTCTTGTCGATGACTGGACGATCAAGGATCACGATTTCCACGAGCTTGGTCCAGGCGACAGCTTCTTGCCATTTGGTTTGGGAGAGTGGTTTTTCCTGGAAAAACGAGTTTTTTAATGAAATTTTCCATAATTTCAGTTACATTCTGTCTATTTTGAGCTCGATTTCTCTAGTTCCAGGTCCCAAAATGCAGAATTTTTTGAGCCAAAAATCGTTATTTTTCCCTAAAATTTTCAGAATTTCATCTCCACTCTCTCTATTTTTTGAGCACAATTTCCATGACTTCAGCTATGAAGCGCTCTATTTCTAATCCCAATTTCTCTAGTTTCAGAGCCAAAACCTCTTATTTTAAGACTCTAATTTCTTAGCCTTGGACCCAAATTTCTGGATTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCATTCTTTCAATCTCCTGCTTCTAGCACCAARTGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAATTAGCGTTCCCACTTCTTATACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATCCTTTTTCTCTTCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTTTATTATCTTCCAATTAGCTTCGTCCAGGTAATCCTACCTAATGACTACACCGTTGATTACCCAGCACCTCTTGCAGAACATCTGGTGGTCATCTAATCCCAACTAGCCAAAATCTATCTATCTCATCAGCTGCCAGCTGTGGAGTCCGGGTCATCTTGTGCCTGTTGCGTCGTAGGGGTCACCAGTGTTCTTCTCTGTCATCCACGCGCGCGCGGGCACATTGGACATATGGTGGTAAGAAGAAGAAGAAGGTGGTGATGTCATCTTATCTGGCACCAAGTCTTCGGGTCAGGGACGAATGACTGGTGTGTGCAATAGGATGATGGCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACNNNGTG</site>
                <isoschizomers>
                    <enzyme>AdeI</enzyme>
                    <enzyme>DraIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>186 161 71 71 63 55 54 48 33 21 21 20 20 19 18 17 17 17 17 16 14 12 9 7 6 3 2 2</canonical_bands>
                <polymorphic_bands>186 161 71 71 70 55 54 48 33 21 21 20 20 19 18 17 17 17 17 16 14 12 9 6 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAATACGAATTTTCAGTTC</pcr_primer_p1>
		<pcr_primer_p2>GATAATAAAGCGGTGTAGTCATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCATTCTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAATTAGCGTTCCCACTTCTTATACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATCCTTTTTCTCTTCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTTTATTATC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCATTCTTTCAATCTCCTGCTTCTAGCACCAARTGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAATTAGCGTTCCCACTTCTTATACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATCCTTTTTCTCTTCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTTTATTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24993</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>13192</contig_pos>
        <strand>+</strand>
        <context>TACCTTCCAA[A/G]TAGCGTTCCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAA</left_flank>
        <right_flank>TAGCGTTCCCACTTCTTATACTTCCTATGGTTTCCTACTGTAATTACCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGACGATCAAGGATCACGATTTCCACGAGCTTGGTCCAGGCGACAGCTTCTTGCCATTTGGTTTGGGAGAGTGGTTTTTCCTGGAAAAACGAGTTTTTTAATGAAATTTTCCATAATTTCAGTTACATTCTGTCTATTTTGAGCTCGATTTCTCTAGTTCCAGGTCCCAAAATGCAGAATTTTTTGAGCCAAAAATCGTTATTTTTCCCTAAAATTTTCAGAATTTCATCTCCACTCTCTCTATTTTTTGAGCACAATTTCCATGACTTCAGCTATGAAGCGCTCTATTTCTAATCCCAATTTCTCTAGTTTCAGAGCCAAAACCTCTTATTTTAAGACTCTAATTTCTTAGCCTTGGACCCAAATTTCTGGATTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCATTCTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAATTAGCGTTCCCACTTCTTATACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATCCTTTTTCTCTTCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTTTATTATCTTCCAATTAGCTTCGTCCAGGTAATCCTACCTAATGACTACACCGTTGATTACCCAGCACCTCTTGCAGAACATCTGGTGGTCATCTAATCCCAACTAGCCAAAATCTATCTATCTCATCAGCTGCCAGCTGTGGAGTCCGGGTCATCTTGTGCCTGTTGCGTCGTAGGGGTCACCAGTGTTCTTCTCTGTCATCCACGCGCGCGCGGGCACATTGGACATATGGTGGTAAGAAGAAGAAGAAGGTGGTGATGTCATCTTATCTGGCACCAAGTCTTCGGGTCAGGGACGAATGACTGGTGTGTGCAATAGGATGATGGCGTTGGTTCAACAGACGGTGGTGAGGTGGAGCATGGGTACGAAGTAACAGATGACAT</canonical>
            <polymorphic>TGGACGATCAAGGATCACGATTTCCACGAGCTTGGTCCAGGCGACAGCTTCTTGCCATTTGGTTTGGGAGAGTGGTTTTTCCTGGAAAAACGAGTTTTTTAATGAAATTTTCCATAATTTCAGTTACATTCTGTCTATTTTGAGCTCGATTTCTCTAGTTCCAGGTCCCAAAATGCAGAATTTTTTGAGCCAAAAATCGTTATTTTTCCCTAAAATTTTCAGAATTTCATCTCCACTCTCTCTATTTTTTGAGCACAATTTCCATGACTTCAGCTATGAAGCGCTCTATTTCTAATCCCAATTTCTCTAGTTTCAGAGCCAAAACCTCTTATTTTAAGACTCTAATTTCTTAGCCTTGGACCCAAATTTCTGGATTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCATTCTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAARTAGCGTTCCCACTTCTTATACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATCCTTTTTCTCTTCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTTTATTATCTTCCAATTAGCTTCGTCCAGGTAATCCTACCTAATGACTACACCGTTGATTACCCAGCACCTCTTGCAGAACATCTGGTGGTCATCTAATCCCAACTAGCCAAAATCTATCTATCTCATCAGCTGCCAGCTGTGGAGTCCGGGTCATCTTGTGCCTGTTGCGTCGTAGGGGTCACCAGTGTTCTTCTCTGTCATCCACGCGCGCGCGGGCACATTGGACATATGGTGGTAAGAAGAAGAAGAAGGTGGTGATGTCATCTTATCTGGCACCAAGTCTTCGGGTCAGGGACGAATGACTGGTGTGTGCAATAGGATGATGGCGTTGGTTCAACAGACGGTGGTGAGGTGGAGCATGGGTACGAAGTAACAGATGACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>372 105 101 87 63 44 44 43 35 34 21 21 11 10 9</canonical_bands>
                <polymorphic_bands>372 105 101 87 63 55 44 43 35 34 21 21 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAATACGAATTTTCAGTTC</pcr_primer_p1>
		<pcr_primer_p2>GATAATAAAGCGGTGTAGTCATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCATTCTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAATTAGCGTTCCCACTTCTTATACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATCCTTTTTCTCTTCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTTTATTATC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCATTCTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAARTAGCGTTCCCACTTCTTATACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATCCTTTTTCTCTTCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTTTATTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24994</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>13210</contig_pos>
        <strand></strand>
        <context>CCCACTTCTT[A/G]TACTTCCTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATGGATATGGTATACTGTAATTACCTTCCAATTAGCGTTCCCACTTCTT</left_flank>
        <right_flank>TACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATCC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTCCACGAGCTTGGTCCAGGCGACAGCTTCTTGCCATTTGGTTTGGGAGAGTGGTTTTTCCTGGAAAAACGAGTTTTTTAATGAAATTTTCCATAATTTCAGTTACATTCTGTCTATTTTGAGCTCGATTTCTCTAGTTCCAGGTCCCAAAATGCAGAATTTTTTGAGCCAAAAATCGTTATTTTTCCCTAAAATTTTCAGAATTTCATCTCCACTCTCTCTATTTTTTGAGCACAATTTCCATGACTTCAGCTATGAAGCGCTCTATTTCTAATCCCAATTTCTCTAGTTTCAGAGCCAAAACCTCTTATTTTAAGACTCTAATTTCTTAGCCTTGGACCCAAATTTCTGGATTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCATTCTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAATTAGCGTTCCCACTTCTTATACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATCCTTTTTCTCTTCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTTTATTATCTTCCAATTAGCTTCGTCCAGGTAATCCTACCTAATGACTACACCGTTGATTACCCAGCACCTCTTGCAGAACATCTGGTGGTCATCTAATCCCAACTAGCCAAAATCTATCTATCTCATCAGCTGCCAGCTGTGGAGTCCGGGTCATCTTGTGCCTGTTGCGTCGTAGGGGTCACCAGTGTTCTTCTCTGTCATCCACGCGCGCGCGGGCACATTGGACATATGGTGGTAAGAAGAAGAAGAAGGTGGTGATGTCATCTTATCTGGCACCAAGTCTTCGGGTCAGGGACGAATGACTGGTGTGTGCAATAGGATGATGGCGTTGGTTCAACAGACGGTGGTGAGGTGGAGCATGGGTACGAAGTAACAGATGACATAGAAAATCCCAAGAGGAA</canonical>
            <polymorphic>GATTTCCACGAGCTTGGTCCAGGCGACAGCTTCTTGCCATTTGGTTTGGGAGAGTGGTTTTTCCTGGAAAAACGAGTTTTTTAATGAAATTTTCCATAATTTCAGTTACATTCTGTCTATTTTGAGCTCGATTTCTCTAGTTCCAGGTCCCAAAATGCAGAATTTTTTGAGCCAAAAATCGTTATTTTTCCCTAAAATTTTCAGAATTTCATCTCCACTCTCTCTATTTTTTGAGCACAATTTCCATGACTTCAGCTATGAAGCGCTCTATTTCTAATCCCAATTTCTCTAGTTTCAGAGCCAAAACCTCTTATTTTAAGACTCTAATTTCTTAGCCTTGGACCCAAATTTCTGGATTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCATTCTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAATTAGCGTTCCCACTTCTTRTACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATCCTTTTTCTCTTCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTTTATTATCTTCCAATTAGCTTCGTCCAGGTAATCCTACCTAATGACTACACCGTTGATTACCCAGCACCTCTTGCAGAACATCTGGTGGTCATCTAATCCCAACTAGCCAAAATCTATCTATCTCATCAGCTGCCAGCTGTGGAGTCCGGGTCATCTTGTGCCTGTTGCGTCGTAGGGGTCACCAGTGTTCTTCTCTGTCATCCACGCGCGCGCGGGCACATTGGACATATGGTGGTAAGAAGAAGAAGAAGGTGGTGATGTCATCTTATCTGGCACCAAGTCTTCGGGTCAGGGACGAATGACTGGTGTGTGCAATAGGATGATGGCGTTGGTTCAACAGACGGTGGTGAGGTGGAGCATGGGTACGAAGTAACAGATGACATAGAAAATCCCAAGAGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAATACGAATTTTCAGTTC</pcr_primer_p1>
		<pcr_primer_p2>GATAATAAAGCGGTGTAGTCATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCATTCTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAATTAGCGTTCCCACTTCTTATACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATCCTTTTTCTCTTCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTTTATTATC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCATTCTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAATTAGCGTTCCCACTTCTTRTACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATCCTTTTTCTCTTCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTTTATTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24995</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>13259</contig_pos>
        <strand>+</strand>
        <context>AGCTTCTAAT[C/T]YTTTTTCTCY</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAAT</left_flank>
        <right_flank>CTTTTTCTCTTCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAGTGGTTTTTCCTGGAAAAACGAGTTTTTTAATGAAATTTTCCATAATTTCAGTTACATTCTGTCTATTTTGAGCTCGATTTCTCTAGTTCCAGGTCCCAAAATGCAGAATTTTTTGAGCCAAAAATCGTTATTTTTCCCTAAAATTTTCAGAATTTCATCTCCACTCTCTCTATTTTTTGAGCACAATTTCCATGACTTCAGCTATGAAGCGCTCTATTTCTAATCCCAATTTCTCTAGTTTCAGAGCCAAAACCTCTTATTTTAAGACTCTAATTTCTTAGCCTTGGACCCAAATTTCTGGATTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCATTCTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAATTAGCGTTCCCACTTCTTATACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATCCTTTTTCTCTTCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTTTATTATCTTCCAATTAGCTTCGTCCAGGTAATCCTACCTAATGACTACACCGTTGATTACCCAGCACCTCTTGCAGAACATCTGGTGGTCATCTAATCCCAACTAGCCAAAATCTATCTATCTCATCAGCTGCCAGCTGTGGAGTCCGGGTCATCTTGTGCCTGTTGCGTCGTAGGGGTCACCAGTGTTCTTCTCTGTCATCCACGCGCGCGCGGGCACATTGGACATATGGTGGTAAGAAGAAGAAGAAGGTGGTGATGTCATCTTATCTGGCACCAAGTCTTCGGGTCAGGGACGAATGACTGGTGTGTGCAATAGGATGATGGCGTTGGTTCAACAGACGGTGGTGAGGTGGAGCATGGGTACGAAGTAACAGATGACATAGAAAATCCCAAGAGGAAGAGGGACTGATGGTGTTCTGATCAAGAACTATAGGAAGATAGGATAGGA</canonical>
            <polymorphic>GAGAGTGGTTTTTCCTGGAAAAACGAGTTTTTTAATGAAATTTTCCATAATTTCAGTTACATTCTGTCTATTTTGAGCTCGATTTCTCTAGTTCCAGGTCCCAAAATGCAGAATTTTTTGAGCCAAAAATCGTTATTTTTCCCTAAAATTTTCAGAATTTCATCTCCACTCTCTCTATTTTTTGAGCACAATTTCCATGACTTCAGCTATGAAGCGCTCTATTTCTAATCCCAATTTCTCTAGTTTCAGAGCCAAAACCTCTTATTTTAAGACTCTAATTTCTTAGCCTTGGACCCAAATTTCTGGATTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCATTCTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAATTAGCGTTCCCACTTCTTATACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATYCTTTTTCTCTTCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTTTATTATCTTCCAATTAGCTTCGTCCAGGTAATCCTACCTAATGACTACACCGTTGATTACCCAGCACCTCTTGCAGAACATCTGGTGGTCATCTAATCCCAACTAGCCAAAATCTATCTATCTCATCAGCTGCCAGCTGTGGAGTCCGGGTCATCTTGTGCCTGTTGCGTCGTAGGGGTCACCAGTGTTCTTCTCTGTCATCCACGCGCGCGCGGGCACATTGGACATATGGTGGTAAGAAGAAGAAGAAGGTGGTGATGTCATCTTATCTGGCACCAAGTCTTCGGGTCAGGGACGAATGACTGGTGTGTGCAATAGGATGATGGCGTTGGTTCAACAGACGGTGGTGAGGTGGAGCATGGGTACGAAGTAACAGATGACATAGAAAATCCCAAGAGGAAGAGGGACTGATGGTGTTCTGATCAAGAACTATAGGAAGATAGGATAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAATACGAATTTTCAGTTC</pcr_primer_p1>
		<pcr_primer_p2>GATAATAAAGCGGTGTAGTCATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCATTCTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAATTAGCGTTCCCACTTCTTATACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATCCTTTTTCTCTTCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTTTATTATC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCATTCTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAATTAGCGTTCCCACTTCTTATACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATYCTTTTTCTCTTCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTTTATTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24996</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>13260</contig_pos>
        <strand>+</strand>
        <context>GCTTCTAATY[C/T]TTTTTCTCYT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATC</left_flank>
        <right_flank>TTTTTCTCTTCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGTGGTTTTTCCTGGAAAAACGAGTTTTTTAATGAAATTTTCCATAATTTCAGTTACATTCTGTCTATTTTGAGCTCGATTTCTCTAGTTCCAGGTCCCAAAATGCAGAATTTTTTGAGCCAAAAATCGTTATTTTTCCCTAAAATTTTCAGAATTTCATCTCCACTCTCTCTATTTTTTGAGCACAATTTCCATGACTTCAGCTATGAAGCGCTCTATTTCTAATCCCAATTTCTCTAGTTTCAGAGCCAAAACCTCTTATTTTAAGACTCTAATTTCTTAGCCTTGGACCCAAATTTCTGGATTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCATTCTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAATTAGCGTTCCCACTTCTTATACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATCCTTTTTCTCTTCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTTTATTATCTTCCAATTAGCTTCGTCCAGGTAATCCTACCTAATGACTACACCGTTGATTACCCAGCACCTCTTGCAGAACATCTGGTGGTCATCTAATCCCAACTAGCCAAAATCTATCTATCTCATCAGCTGCCAGCTGTGGAGTCCGGGTCATCTTGTGCCTGTTGCGTCGTAGGGGTCACCAGTGTTCTTCTCTGTCATCCACGCGCGCGCGGGCACATTGGACATATGGTGGTAAGAAGAAGAAGAAGGTGGTGATGTCATCTTATCTGGCACCAAGTCTTCGGGTCAGGGACGAATGACTGGTGTGTGCAATAGGATGATGGCGTTGGTTCAACAGACGGTGGTGAGGTGGAGCATGGGTACGAAGTAACAGATGACATAGAAAATCCCAAGAGGAAGAGGGACTGATGGTGTTCTGATCAAGAACTATAGGAAGATAGGATAGGAG</canonical>
            <polymorphic>AGAGTGGTTTTTCCTGGAAAAACGAGTTTTTTAATGAAATTTTCCATAATTTCAGTTACATTCTGTCTATTTTGAGCTCGATTTCTCTAGTTCCAGGTCCCAAAATGCAGAATTTTTTGAGCCAAAAATCGTTATTTTTCCCTAAAATTTTCAGAATTTCATCTCCACTCTCTCTATTTTTTGAGCACAATTTCCATGACTTCAGCTATGAAGCGCTCTATTTCTAATCCCAATTTCTCTAGTTTCAGAGCCAAAACCTCTTATTTTAAGACTCTAATTTCTTAGCCTTGGACCCAAATTTCTGGATTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCATTCTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAATTAGCGTTCCCACTTCTTATACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATCYTTTTTCTCTTCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTTTATTATCTTCCAATTAGCTTCGTCCAGGTAATCCTACCTAATGACTACACCGTTGATTACCCAGCACCTCTTGCAGAACATCTGGTGGTCATCTAATCCCAACTAGCCAAAATCTATCTATCTCATCAGCTGCCAGCTGTGGAGTCCGGGTCATCTTGTGCCTGTTGCGTCGTAGGGGTCACCAGTGTTCTTCTCTGTCATCCACGCGCGCGCGGGCACATTGGACATATGGTGGTAAGAAGAAGAAGAAGGTGGTGATGTCATCTTATCTGGCACCAAGTCTTCGGGTCAGGGACGAATGACTGGTGTGTGCAATAGGATGATGGCGTTGGTTCAACAGACGGTGGTGAGGTGGAGCATGGGTACGAAGTAACAGATGACATAGAAAATCCCAAGAGGAAGAGGGACTGATGGTGTTCTGATCAAGAACTATAGGAAGATAGGATAGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAATACGAATTTTCAGTTC</pcr_primer_p1>
		<pcr_primer_p2>GATAATAAAGCGGTGTAGTCATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCATTCTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAATTAGCGTTCCCACTTCTTATACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATCCTTTTTCTCTTCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTTTATTATC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCATTCTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAATTAGCGTTCCCACTTCTTATACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATCYTTTTTCTCTTCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTTTATTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24997</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>13269</contig_pos>
        <strand>+</strand>
        <context>YYTTTTTCTC[C/T]TCCCACCTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATCCTTTTTCTC</left_flank>
        <right_flank>TCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTTTATTATCTTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCTGGAAAAACGAGTTTTTTAATGAAATTTTCCATAATTTCAGTTACATTCTGTCTATTTTGAGCTCGATTTCTCTAGTTCCAGGTCCCAAAATGCAGAATTTTTTGAGCCAAAAATCGTTATTTTTCCCTAAAATTTTCAGAATTTCATCTCCACTCTCTCTATTTTTTGAGCACAATTTCCATGACTTCAGCTATGAAGCGCTCTATTTCTAATCCCAATTTCTCTAGTTTCAGAGCCAAAACCTCTTATTTTAAGACTCTAATTTCTTAGCCTTGGACCCAAATTTCTGGATTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCATTCTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAATTAGCGTTCCCACTTCTTATACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATCCTTTTTCTCTTCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTTTATTATCTTCCAATTAGCTTCGTCCAGGTAATCCTACCTAATGACTACACCGTTGATTACCCAGCACCTCTTGCAGAACATCTGGTGGTCATCTAATCCCAACTAGCCAAAATCTATCTATCTCATCAGCTGCCAGCTGTGGAGTCCGGGTCATCTTGTGCCTGTTGCGTCGTAGGGGTCACCAGTGTTCTTCTCTGTCATCCACGCGCGCGCGGGCACATTGGACATATGGTGGTAAGAAGAAGAAGAAGGTGGTGATGTCATCTTATCTGGCACCAAGTCTTCGGGTCAGGGACGAATGACTGGTGTGTGCAATAGGATGATGGCGTTGGTTCAACAGACGGTGGTGAGGTGGAGCATGGGTACGAAGTAACAGATGACATAGAAAATCCCAAGAGGAAGAGGGACTGATGGTGTTCTGATCAAGAACTATAGGAAGATAGGATAGGAGATAGCAACA</canonical>
            <polymorphic>TTTCCTGGAAAAACGAGTTTTTTAATGAAATTTTCCATAATTTCAGTTACATTCTGTCTATTTTGAGCTCGATTTCTCTAGTTCCAGGTCCCAAAATGCAGAATTTTTTGAGCCAAAAATCGTTATTTTTCCCTAAAATTTTCAGAATTTCATCTCCACTCTCTCTATTTTTTGAGCACAATTTCCATGACTTCAGCTATGAAGCGCTCTATTTCTAATCCCAATTTCTCTAGTTTCAGAGCCAAAACCTCTTATTTTAAGACTCTAATTTCTTAGCCTTGGACCCAAATTTCTGGATTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCATTCTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAATTAGCGTTCCCACTTCTTATACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATCCTTTTTCTCYTCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTTTATTATCTTCCAATTAGCTTCGTCCAGGTAATCCTACCTAATGACTACACCGTTGATTACCCAGCACCTCTTGCAGAACATCTGGTGGTCATCTAATCCCAACTAGCCAAAATCTATCTATCTCATCAGCTGCCAGCTGTGGAGTCCGGGTCATCTTGTGCCTGTTGCGTCGTAGGGGTCACCAGTGTTCTTCTCTGTCATCCACGCGCGCGCGGGCACATTGGACATATGGTGGTAAGAAGAAGAAGAAGGTGGTGATGTCATCTTATCTGGCACCAAGTCTTCGGGTCAGGGACGAATGACTGGTGTGTGCAATAGGATGATGGCGTTGGTTCAACAGACGGTGGTGAGGTGGAGCATGGGTACGAAGTAACAGATGACATAGAAAATCCCAAGAGGAAGAGGGACTGATGGTGTTCTGATCAAGAACTATAGGAAGATAGGATAGGAGATAGCAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCCAGAGAATCTTCCAGAG</pcr_primer_p1>
		<pcr_primer_p2>CGAAGCTAATTGGAAGATAATAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTCCAGAGAATCTTCCAGAGCATTCTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAATTAGCGTTCCCACTTCTTATACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATCCTTTTTCTCTTCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTTTATTATCTTCCAATTAGCTTCG</canonical_amplicon>
		<polymorphic_amplicon>GTTCCAGAGAATCTTCCAGAGCATTCTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAATTAGCGTTCCCACTTCTTATACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATCCTTTTTCTCYTCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTTTATTATCTTCCAATTAGCTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24998</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>13373</contig_pos>
        <strand>+</strand>
        <context>TGATTACCCA[A/G]CACCTCTTGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAGCTTCGTCCAGGTAATCCTACCTAATGACTACACCGTTGATTACCCA</left_flank>
        <right_flank>CACCTCTTGCAGAACATCTGGTGGTCATCTAATCCCAACTAGCCAAAATC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTGAGCCAAAAATCGTTATTTTTCCCTAAAATTTTCAGAATTTCATCTCCACTCTCTCTATTTTTTGAGCACAATTTCCATGACTTCAGCTATGAAGCGCTCTATTTCTAATCCCAATTTCTCTAGTTTCAGAGCCAAAACCTCTTATTTTAAGACTCTAATTTCTTAGCCTTGGACCCAAATTTCTGGATTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCATTCTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAATTAGCGTTCCCACTTCTTATACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATCCTTTTTCTCTTCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTTTATTATCTTCCAATTAGCTTCGTCCAGGTAATCCTACCTAATGACTACACCGTTGATTACCCAGCACCTCTTGCAGAACATCTGGTGGTCATCTAATCCCAACTAGCCAAAATCTATCTATCTCATCAGCTGCCAGCTGTGGAGTCCGGGTCATCTTGTGCCTGTTGCGTCGTAGGGGTCACCAGTGTTCTTCTCTGTCATCCACGCGCGCGCGGGCACATTGGACATATGGTGGTAAGAAGAAGAAGAAGGTGGTGATGTCATCTTATCTGGCACCAAGTCTTCGGGTCAGGGACGAATGACTGGTGTGTGCAATAGGATGATGGCGTTGGTTCAACAGACGGTGGTGAGGTGGAGCATGGGTACGAAGTAACAGATGACATAGAAAATCCCAAGAGGAAGAGGGACTGATGGTGTTCTGATCAAGAACTATAGGAAGATAGGATAGGAGATAGCAACACAGGTGCTCCTGGAGCTTAGGAGCGATGCTCAAGTCTTTCGAAAGATTCTGGAGTGATAATACTTATATATCCTATCATTTAGACGCTCAGATGCCTCCCAGAA</canonical>
            <polymorphic>TTTTTGAGCCAAAAATCGTTATTTTTCCCTAAAATTTTCAGAATTTCATCTCCACTCTCTCTATTTTTTGAGCACAATTTCCATGACTTCAGCTATGAAGCGCTCTATTTCTAATCCCAATTTCTCTAGTTTCAGAGCCAAAACCTCTTATTTTAAGACTCTAATTTCTTAGCCTTGGACCCAAATTTCTGGATTTTGAATACGAATTTTCAGTTCCAGAGAATCTTCCAGAGCATTCTTTCAATCTCCTGCTTCTAGCACCAAGTGCCTCATTTCTTGGACTTCCTATGGATATGGTATACTGTAATTACCTTCCAATTAGCGTTCCCACTTCTTATACTTCCTATGGTTTCCTACTGTAATTACCTCATAAATAGCTTCTAATCCTTTTTCTCTTCCCACCTCTATTCTCACTACTTTAATGACTACACCGCTTTATTATCTTCCAATTAGCTTCGTCCAGGTAATCCTACCTAATGACTACACCGTTGATTACCCARCACCTCTTGCAGAACATCTGGTGGTCATCTAATCCCAACTAGCCAAAATCTATCTATCTCATCAGCTGCCAGCTGTGGAGTCCGGGTCATCTTGTGCCTGTTGCGTCGTAGGGGTCACCAGTGTTCTTCTCTGTCATCCACGCGCGCGCGGGCACATTGGACATATGGTGGTAAGAAGAAGAAGAAGGTGGTGATGTCATCTTATCTGGCACCAAGTCTTCGGGTCAGGGACGAATGACTGGTGTGTGCAATAGGATGATGGCGTTGGTTCAACAGACGGTGGTGAGGTGGAGCATGGGTACGAAGTAACAGATGACATAGAAAATCCCAAGAGGAAGAGGGACTGATGGTGTTCTGATCAAGAACTATAGGAAGATAGGATAGGAGATAGCAACACAGGTGCTCCTGGAGCTTAGGAGCGATGCTCAAGTCTTTCGAAAGATTCTGGAGTGATAATACTTATATATCCTATCATTTAGACGCTCAGATGCCTCCCAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCANNNNNTGC</site>
                <isoschizomers>
                    <enzyme>ApaBI</enzyme>
                    <enzyme>BstAPI</enzyme>
                </isoschizomers>
                <canonical_bands>493 265 242</canonical_bands>
                <polymorphic_bands>735 265</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>402 264 242 92</canonical_bands>
                <polymorphic_bands>644 264 92</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGCTTTATTATCTTCCAATTA</pcr_primer_p1>
		<pcr_primer_p2>TCTTCTTCTTACCACCATATGTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CCGCTTTATTATCTTCCAATTAGCTTCGTCCAGGTAATCCTACCTAATGACTACACCGTTGATTACCCAGCACCTCTTGCAGAACATCTGGTGGTCATCTAATCCCAACTAGCCAAAATCTATCTATCTCATCAGCTGCCAGCTGTGGAGTCCGGGTCATCTTGTGCCTGTTGCGTCGTAGGGGTCACCAGTGTTCTTCTCTGTCATCCACGCGCGCGCGGGCACATTGGACATATGGTGGTAAGAAGAAGA</canonical_amplicon>
		<polymorphic_amplicon>CCGCTTTATTATCTTCCAATTAGCTTCGTCCAGGTAATCCTACCTAATGACTACACCGTTGATTACCCARCACCTCTTGCAGAACATCTGGTGGTCATCTAATCCCAACTAGCCAAAATCTATCTATCTCATCAGCTGCCAGCTGTGGAGTCCGGGTCATCTTGTGCCTGTTGCGTCGTAGGGGTCACCAGTGTTCTTCTCTGTCATCCACGCGCGCGCGGGCACATTGGACATATGGTGGTAAGAAGAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb24999</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>20509</contig_pos>
        <strand>+</strand>
        <context>GTAGTCCTGA[C/T]TTTTTTTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATGAAGACTGGTAAACTGTAGTTTGTAGTTTGTGCTTTGTAGTCCTGA</left_flank>
        <right_flank>TTTTTTTTCTTTTTTCGAAGATAAATTACTTCTATTTGGACCGGTTTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGAAGTCAATGCGTATACGATTCAGGAGAGAGGATGTGTTCATTTTAATGGACCAAAACGGGCGGTATGTATTACTTTCTTGAAATTTGAAGGGTGTTGAAGACATAGAACATTGTAAAAGGTTTCAAAAAAGACAAAACCGGAAGAGGAATCGAACCAAAGCCTTTCCGCACACTTGCGCACACCACATCCCCAACACCACGGCTGCAACTTGAGAGCTAGGAGGGGAACGCGGTTAAATGGTGGGGGCGCAGAGGGCGCCTCTCCACTTCTCAGGCGAGGGAAACAGTAAATCCTGAAAATCAAAAAAAGCGGAGAAATCTAAAAATTAACCATTTTTTCCAGATTTTCAACATTATCGTAATGGAGAGAAGCTCGAAAAGTTGGTCGCCATTCATTCCAGACTGGGAGAGAGTGTTCTCGACTGTCGAGAGAGAAGTTGCAGATAATGAAGACTGGTAAACTGTAGTTTGTAGTTTGTGCTTTGTAGTCCTGATTTTTTTTTCTTTTTTCGAAGATAAATTACTTCTATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTTTATGTTCAAGAGTCATTAACTGCCCCGAACGGTCCTTGTTCGGGATTCCAGAATCCGCCGATCAACGGCTTCGGAGGTGGCGGGGGAAGTTGAGGGCGAGAGAGTACGCCAGCGAGGAGAATTAGAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGGACAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAAACTTTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTCCGGGCCAAGGACTAAAACATTACCGGCTAAAAGAAGAAAATTGAAAACAAAAAGGGCAAGAAGACAATGATA</canonical>
            <polymorphic>ATTTGAAGTCAATGCGTATACGATTCAGGAGAGAGGATGTGTTCATTTTAATGGACCAAAACGGGCGGTATGTATTACTTTCTTGAAATTTGAAGGGTGTTGAAGACATAGAACATTGTAAAAGGTTTCAAAAAAGACAAAACCGGAAGAGGAATCGAACCAAAGCCTTTCCGCACACTTGCGCACACCACATCCCCAACACCACGGCTGCAACTTGAGAGCTAGGAGGGGAACGCGGTTAAATGGTGGGGGCGCAGAGGGCGCCTCTCCACTTCTCAGGCGAGGGAAACAGTAAATCCTGAAAATCAAAAAAAGCGGAGAAATCTAAAAATTAACCATTTTTTCCAGATTTTCAACATTATCGTAATGGAGAGAAGCTCGAAAAGTTGGTCGCCATTCATTCCAGACTGGGAGAGAGTGTTCTCGACTGTCGAGAGAGAAGTTGCAGATAATGAAGACTGGTAAACTGTAGTTTGTAGTTTGTGCTTTGTAGTCCTGAYTTTTTTTTCTTTTTTCGAAGATAAATTACTTCTATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTTTATGTTCAAGAGTCATTAACTGCCCCGAACGGTCCTTGTTCGGGATTCCAGAATCCGCCGATCAACGGCTTCGGAGGTGGCGGGGGAAGTTGAGGGCGAGAGAGTACGCCAGCGAGGAGAATTAGAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGGACAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAAACTTTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTCCGGGCCAAGGACTAAAACATTACCGGCTAAAAGAAGAAAATTGAAAACAAAAAGGGCAAGAAGACAATGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCGGAGAAATCTAAAAATTAAC</pcr_primer_p1>
		<pcr_primer_p2>AAATTCAATTCGAATACAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AGCGGAGAAATCTAAAAATTAACCATTTTTTCCAGATTTTCAACATTATCGTAATGGAGAGAAGCTCGAAAAGTTGGTCGCCATTCATTCCAGACTGGGAGAGAGTGTTCTCGACTGTCGAGAGAGAAGTTGCAGATAATGAAGACTGGTAAACTGTAGTTTGTAGTTTGTGCTTTGTAGTCCTGATTTTTTTTTCTTTTTTCGAAGATAAATTACTTCTATTTGGACCGGTTTTTGTATTCGAATTGAATTT</canonical_amplicon>
		<polymorphic_amplicon>AGCGGAGAAATCTAAAAATTAACCATTTTTTCCAGATTTTCAACATTATCGTAATGGAGAGAAGCTCGAAAAGTTGGTCGCCATTCATTCCAGACTGGGAGAGAGTGTTCTCGACTGTCGAGAGAGAAGTTGCAGATAATGAAGACTGGTAAACTGTAGTTTGTAGTTTGTGCTTTGTAGTCCTGAYTTTTTTTTCTTTTTTCGAAGATAAATTACTTCTATTTGGACCGGTTTTTGTATTCGAATTGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25000</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>20529</contig_pos>
        <strand></strand>
        <context>TTTTTTCGAA[G/A]ATAAATTACT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAGTTTGTAGTTTGTGCTTTGTAGTCCTGATTTTTTTTTCTTTTTTCGAA</left_flank>
        <right_flank>ATAAATTACTTCTATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATTCAGGAGAGAGGATGTGTTCATTTTAATGGACCAAAACGGGCGGTATGTATTACTTTCTTGAAATTTGAAGGGTGTTGAAGACATAGAACATTGTAAAAGGTTTCAAAAAAGACAAAACCGGAAGAGGAATCGAACCAAAGCCTTTCCGCACACTTGCGCACACCACATCCCCAACACCACGGCTGCAACTTGAGAGCTAGGAGGGGAACGCGGTTAAATGGTGGGGGCGCAGAGGGCGCCTCTCCACTTCTCAGGCGAGGGAAACAGTAAATCCTGAAAATCAAAAAAAGCGGAGAAATCTAAAAATTAACCATTTTTTCCAGATTTTCAACATTATCGTAATGGAGAGAAGCTCGAAAAGTTGGTCGCCATTCATTCCAGACTGGGAGAGAGTGTTCTCGACTGTCGAGAGAGAAGTTGCAGATAATGAAGACTGGTAAACTGTAGTTTGTAGTTTGTGCTTTGTAGTCCTGATTTTTTTTTCTTTTTTCGAAGATAAATTACTTCTATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTTTATGTTCAAGAGTCATTAACTGCCCCGAACGGTCCTTGTTCGGGATTCCAGAATCCGCCGATCAACGGCTTCGGAGGTGGCGGGGGAAGTTGAGGGCGAGAGAGTACGCCAGCGAGGAGAATTAGAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGGACAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAAACTTTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTCCGGGCCAAGGACTAAAACATTACCGGCTAAAAGAAGAAAATTGAAAACAAAAAGGGCAAGAAGACAATGATAAGGTTTTCAGCATTTTCAGA</canonical>
            <polymorphic>CGATTCAGGAGAGAGGATGTGTTCATTTTAATGGACCAAAACGGGCGGTATGTATTACTTTCTTGAAATTTGAAGGGTGTTGAAGACATAGAACATTGTAAAAGGTTTCAAAAAAGACAAAACCGGAAGAGGAATCGAACCAAAGCCTTTCCGCACACTTGCGCACACCACATCCCCAACACCACGGCTGCAACTTGAGAGCTAGGAGGGGAACGCGGTTAAATGGTGGGGGCGCAGAGGGCGCCTCTCCACTTCTCAGGCGAGGGAAACAGTAAATCCTGAAAATCAAAAAAAGCGGAGAAATCTAAAAATTAACCATTTTTTCCAGATTTTCAACATTATCGTAATGGAGAGAAGCTCGAAAAGTTGGTCGCCATTCATTCCAGACTGGGAGAGAGTGTTCTCGACTGTCGAGAGAGAAGTTGCAGATAATGAAGACTGGTAAACTGTAGTTTGTAGTTTGTGCTTTGTAGTCCTGATTTTTTTTTCTTTTTTCGAARATAAATTACTTCTATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTTTATGTTCAAGAGTCATTAACTGCCCCGAACGGTCCTTGTTCGGGATTCCAGAATCCGCCGATCAACGGCTTCGGAGGTGGCGGGGGAAGTTGAGGGCGAGAGAGTACGCCAGCGAGGAGAATTAGAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGGACAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAAACTTTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTCCGGGCCAAGGACTAAAACATTACCGGCTAAAAGAAGAAAATTGAAAACAAAAAGGGCAAGAAGACAATGATAAGGTTTTCAGCATTTTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAGAGAAGTTGCAGATAATGA</pcr_primer_p1>
		<pcr_primer_p2>GGGCAGTTAATGACTCTTGA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GAGAGAGAAGTTGCAGATAATGAAGACTGGTAAACTGTAGTTTGTAGTTTGTGCTTTGTAGTCCTGATTTTTTTTTCTTTTTTCGAAGATAAATTACTTCTATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTTTATGTTCAAGAGTCATTAACTGCCC</canonical_amplicon>
		<polymorphic_amplicon>GAGAGAGAAGTTGCAGATAATGAAGACTGGTAAACTGTAGTTTGTAGTTTGTGCTTTGTAGTCCTGATTTTTTTTTCTTTTTTCGAARATAAATTACTTCTATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTTTATGTTCAAGAGTCATTAACTGCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25001</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>20542</contig_pos>
        <strand></strand>
        <context>AAATTACTTC[T/C]ATTTGGACCG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTGCTTTGTAGTCCTGATTTTTTTTTCTTTTTTCGAAGATAAATTACTTC</left_flank>
        <right_flank>ATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGATGTGTTCATTTTAATGGACCAAAACGGGCGGTATGTATTACTTTCTTGAAATTTGAAGGGTGTTGAAGACATAGAACATTGTAAAAGGTTTCAAAAAAGACAAAACCGGAAGAGGAATCGAACCAAAGCCTTTCCGCACACTTGCGCACACCACATCCCCAACACCACGGCTGCAACTTGAGAGCTAGGAGGGGAACGCGGTTAAATGGTGGGGGCGCAGAGGGCGCCTCTCCACTTCTCAGGCGAGGGAAACAGTAAATCCTGAAAATCAAAAAAAGCGGAGAAATCTAAAAATTAACCATTTTTTCCAGATTTTCAACATTATCGTAATGGAGAGAAGCTCGAAAAGTTGGTCGCCATTCATTCCAGACTGGGAGAGAGTGTTCTCGACTGTCGAGAGAGAAGTTGCAGATAATGAAGACTGGTAAACTGTAGTTTGTAGTTTGTGCTTTGTAGTCCTGATTTTTTTTTCTTTTTTCGAAGATAAATTACTTCTATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTTTATGTTCAAGAGTCATTAACTGCCCCGAACGGTCCTTGTTCGGGATTCCAGAATCCGCCGATCAACGGCTTCGGAGGTGGCGGGGGAAGTTGAGGGCGAGAGAGTACGCCAGCGAGGAGAATTAGAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGGACAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAAACTTTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTCCGGGCCAAGGACTAAAACATTACCGGCTAAAAGAAGAAAATTGAAAACAAAAAGGGCAAGAAGACAATGATAAGGTTTTCAGCATTTTCAGAGTTCGAAATCAAG</canonical>
            <polymorphic>AGGATGTGTTCATTTTAATGGACCAAAACGGGCGGTATGTATTACTTTCTTGAAATTTGAAGGGTGTTGAAGACATAGAACATTGTAAAAGGTTTCAAAAAAGACAAAACCGGAAGAGGAATCGAACCAAAGCCTTTCCGCACACTTGCGCACACCACATCCCCAACACCACGGCTGCAACTTGAGAGCTAGGAGGGGAACGCGGTTAAATGGTGGGGGCGCAGAGGGCGCCTCTCCACTTCTCAGGCGAGGGAAACAGTAAATCCTGAAAATCAAAAAAAGCGGAGAAATCTAAAAATTAACCATTTTTTCCAGATTTTCAACATTATCGTAATGGAGAGAAGCTCGAAAAGTTGGTCGCCATTCATTCCAGACTGGGAGAGAGTGTTCTCGACTGTCGAGAGAGAAGTTGCAGATAATGAAGACTGGTAAACTGTAGTTTGTAGTTTGTGCTTTGTAGTCCTGATTTTTTTTTCTTTTTTCGAAGATAAATTACTTCYATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTTTATGTTCAAGAGTCATTAACTGCCCCGAACGGTCCTTGTTCGGGATTCCAGAATCCGCCGATCAACGGCTTCGGAGGTGGCGGGGGAAGTTGAGGGCGAGAGAGTACGCCAGCGAGGAGAATTAGAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGGACAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAAACTTTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTCCGGGCCAAGGACTAAAACATTACCGGCTAAAAGAAGAAAATTGAAAACAAAAAGGGCAAGAAGACAATGATAAGGTTTTCAGCATTTTCAGAGTTCGAAATCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAGAGAAGTTGCAGATAATGA</pcr_primer_p1>
		<pcr_primer_p2>GGGCAGTTAATGACTCTTGA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GAGAGAGAAGTTGCAGATAATGAAGACTGGTAAACTGTAGTTTGTAGTTTGTGCTTTGTAGTCCTGATTTTTTTTTCTTTTTTCGAAGATAAATTACTTCTATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTTTATGTTCAAGAGTCATTAACTGCCC</canonical_amplicon>
		<polymorphic_amplicon>GAGAGAGAAGTTGCAGATAATGAAGACTGGTAAACTGTAGTTTGTAGTTTGTGCTTTGTAGTCCTGATTTTTTTTTCTTTTTTCGAAGATAAATTACTTCYATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTTTATGTTCAAGAGTCATTAACTGCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25002</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>20577</contig_pos>
        <strand>+</strand>
        <context>ATTGAATTTG[A/C]GTTGAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGATAAATTACTTCTATTTGGACCGGTTTTTGTATTCGAATTGAATTTG</left_flank>
        <right_flank>GTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGTATTACTTTCTTGAAATTTGAAGGGTGTTGAAGACATAGAACATTGTAAAAGGTTTCAAAAAAGACAAAACCGGAAGAGGAATCGAACCAAAGCCTTTCCGCACACTTGCGCACACCACATCCCCAACACCACGGCTGCAACTTGAGAGCTAGGAGGGGAACGCGGTTAAATGGTGGGGGCGCAGAGGGCGCCTCTCCACTTCTCAGGCGAGGGAAACAGTAAATCCTGAAAATCAAAAAAAGCGGAGAAATCTAAAAATTAACCATTTTTTCCAGATTTTCAACATTATCGTAATGGAGAGAAGCTCGAAAAGTTGGTCGCCATTCATTCCAGACTGGGAGAGAGTGTTCTCGACTGTCGAGAGAGAAGTTGCAGATAATGAAGACTGGTAAACTGTAGTTTGTAGTTTGTGCTTTGTAGTCCTGATTTTTTTTTCTTTTTTCGAAGATAAATTACTTCTATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTTTATGTTCAAGAGTCATTAACTGCCCCGAACGGTCCTTGTTCGGGATTCCAGAATCCGCCGATCAACGGCTTCGGAGGTGGCGGGGGAAGTTGAGGGCGAGAGAGTACGCCAGCGAGGAGAATTAGAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGGACAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAAACTTTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTCCGGGCCAAGGACTAAAACATTACCGGCTAAAAGAAGAAAATTGAAAACAAAAAGGGCAAGAAGACAATGATAAGGTTTTCAGCATTTTCAGAGTTCGAAATCAAGCAATTTGACAAGGTGGAGTTGTTTTCGGCGCATCT</canonical>
            <polymorphic>TATGTATTACTTTCTTGAAATTTGAAGGGTGTTGAAGACATAGAACATTGTAAAAGGTTTCAAAAAAGACAAAACCGGAAGAGGAATCGAACCAAAGCCTTTCCGCACACTTGCGCACACCACATCCCCAACACCACGGCTGCAACTTGAGAGCTAGGAGGGGAACGCGGTTAAATGGTGGGGGCGCAGAGGGCGCCTCTCCACTTCTCAGGCGAGGGAAACAGTAAATCCTGAAAATCAAAAAAAGCGGAGAAATCTAAAAATTAACCATTTTTTCCAGATTTTCAACATTATCGTAATGGAGAGAAGCTCGAAAAGTTGGTCGCCATTCATTCCAGACTGGGAGAGAGTGTTCTCGACTGTCGAGAGAGAAGTTGCAGATAATGAAGACTGGTAAACTGTAGTTTGTAGTTTGTGCTTTGTAGTCCTGATTTTTTTTTCTTTTTTCGAAGATAAATTACTTCTATTTGGACCGGTTTTTGTATTCGAATTGAATTTGMGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTTTATGTTCAAGAGTCATTAACTGCCCCGAACGGTCCTTGTTCGGGATTCCAGAATCCGCCGATCAACGGCTTCGGAGGTGGCGGGGGAAGTTGAGGGCGAGAGAGTACGCCAGCGAGGAGAATTAGAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGGACAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAAACTTTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTCCGGGCCAAGGACTAAAACATTACCGGCTAAAAGAAGAAAATTGAAAACAAAAAGGGCAAGAAGACAATGATAAGGTTTTCAGCATTTTCAGAGTTCGAAATCAAGCAATTTGACAAGGTGGAGTTGTTTTCGGCGCATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAGAGAAGTTGCAGATAATGA</pcr_primer_p1>
		<pcr_primer_p2>GGGCAGTTAATGACTCTTGA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GAGAGAGAAGTTGCAGATAATGAAGACTGGTAAACTGTAGTTTGTAGTTTGTGCTTTGTAGTCCTGATTTTTTTTTCTTTTTTCGAAGATAAATTACTTCTATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTTTATGTTCAAGAGTCATTAACTGCCC</canonical_amplicon>
		<polymorphic_amplicon>GAGAGAGAAGTTGCAGATAATGAAGACTGGTAAACTGTAGTTTGTAGTTTGTGCTTTGTAGTCCTGATTTTTTTTTCTTTTTTCGAAGATAAATTACTTCTATTTGGACCGGTTTTTGTATTCGAATTGAATTTGMGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTTTATGTTCAAGAGTCATTAACTGCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25003</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>20658</contig_pos>
        <strand>+</strand>
        <context>attcaaaatt[G/T]tatGTTCAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATT</left_flank>
        <right_flank>TATGTTCAAGAGTCATTAACTGCCCCGAACGGTCCTTGTTCGGGATTCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAATCGAACCAAAGCCTTTCCGCACACTTGCGCACACCACATCCCCAACACCACGGCTGCAACTTGAGAGCTAGGAGGGGAACGCGGTTAAATGGTGGGGGCGCAGAGGGCGCCTCTCCACTTCTCAGGCGAGGGAAACAGTAAATCCTGAAAATCAAAAAAAGCGGAGAAATCTAAAAATTAACCATTTTTTCCAGATTTTCAACATTATCGTAATGGAGAGAAGCTCGAAAAGTTGGTCGCCATTCATTCCAGACTGGGAGAGAGTGTTCTCGACTGTCGAGAGAGAAGTTGCAGATAATGAAGACTGGTAAACTGTAGTTTGTAGTTTGTGCTTTGTAGTCCTGATTTTTTTTTCTTTTTTCGAAGATAAATTACTTCTATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTTTATGTTCAAGAGTCATTAACTGCCCCGAACGGTCCTTGTTCGGGATTCCAGAATCCGCCGATCAACGGCTTCGGAGGTGGCGGGGGAAGTTGAGGGCGAGAGAGTACGCCAGCGAGGAGAATTAGAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGGACAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAAACTTTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTCCGGGCCAAGGACTAAAACATTACCGGCTAAAAGAAGAAAATTGAAAACAAAAAGGGCAAGAAGACAATGATAAGGTTTTCAGCATTTTCAGAGTTCGAAATCAAGCAATTTGACAAGGTGGAGTTGTTTTCGGCGCATCTGCAAAAAAAAATTTTGGCTTTAAAAATTGTTTGTCTGAAATTTCCAAATTTTTAGCTCTAGAATGTTCTAGAATGGTCTAA</canonical>
            <polymorphic>AGGAATCGAACCAAAGCCTTTCCGCACACTTGCGCACACCACATCCCCAACACCACGGCTGCAACTTGAGAGCTAGGAGGGGAACGCGGTTAAATGGTGGGGGCGCAGAGGGCGCCTCTCCACTTCTCAGGCGAGGGAAACAGTAAATCCTGAAAATCAAAAAAAGCGGAGAAATCTAAAAATTAACCATTTTTTCCAGATTTTCAACATTATCGTAATGGAGAGAAGCTCGAAAAGTTGGTCGCCATTCATTCCAGACTGGGAGAGAGTGTTCTCGACTGTCGAGAGAGAAGTTGCAGATAATGAAGACTGGTAAACTGTAGTTTGTAGTTTGTGCTTTGTAGTCCTGATTTTTTTTTCTTTTTTCGAAGATAAATTACTTCTATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTKTATGTTCAAGAGTCATTAACTGCCCCGAACGGTCCTTGTTCGGGATTCCAGAATCCGCCGATCAACGGCTTCGGAGGTGGCGGGGGAAGTTGAGGGCGAGAGAGTACGCCAGCGAGGAGAATTAGAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGGACAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAAACTTTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTCCGGGCCAAGGACTAAAACATTACCGGCTAAAAGAAGAAAATTGAAAACAAAAAGGGCAAGAAGACAATGATAAGGTTTTCAGCATTTTCAGAGTTCGAAATCAAGCAATTTGACAAGGTGGAGTTGTTTTCGGCGCATCTGCAAAAAAAAATTTTGGCTTTAAAAATTGTTTGTCTGAAATTTCCAAATTTTTAGCTCTAGAATGTTCTAGAATGGTCTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>412 155 155 103 46 35 30 29 13 8 7 7</canonical_bands>
                <polymorphic_bands>412 162 155 103 46 35 30 29 13 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTGGACCGGTTTTTGTAT</pcr_primer_p1>
		<pcr_primer_p2>TCTTTTCTCTCTTTCTGATTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>ATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTTTATGTTCAAGAGTCATTAACTGCCCCGAACGGTCCTTGTTCGGGATTCCAGAATCCGCCGATCAACGGCTTCGGAGGTGGCGGGGGAAGTTGAGGGCGAGAGAGTACGCCAGCGAGGAGAATTAGAGAAATCAGAAAGAGAGAAAAGA</canonical_amplicon>
		<polymorphic_amplicon>ATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTKTATGTTCAAGAGTCATTAACTGCCCCGAACGGTCCTTGTTCGGGATTCCAGAATCCGCCGATCAACGGCTTCGGAGGTGGCGGGGGAAGTTGAGGGCGAGAGAGTACGCCAGCGAGGAGAATTAGAGAAATCAGAAAGAGAGAAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25004</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>20742</contig_pos>
        <strand>+</strand>
        <context>GAGGTGGCGG[G/T]GGAAGTTGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCTTGTTCGGGATTCCAGAATCCGCCGATCAACGGCTTCGGAGGTGGCGG</left_flank>
        <right_flank>GGAAGTTGAGGGCGAGAGAGTACGCCAGCGAGGAGAATTAGAGAAATCAG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCGGTTAAATGGTGGGGGCGCAGAGGGCGCCTCTCCACTTCTCAGGCGAGGGAAACAGTAAATCCTGAAAATCAAAAAAAGCGGAGAAATCTAAAAATTAACCATTTTTTCCAGATTTTCAACATTATCGTAATGGAGAGAAGCTCGAAAAGTTGGTCGCCATTCATTCCAGACTGGGAGAGAGTGTTCTCGACTGTCGAGAGAGAAGTTGCAGATAATGAAGACTGGTAAACTGTAGTTTGTAGTTTGTGCTTTGTAGTCCTGATTTTTTTTTCTTTTTTCGAAGATAAATTACTTCTATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTTTATGTTCAAGAGTCATTAACTGCCCCGAACGGTCCTTGTTCGGGATTCCAGAATCCGCCGATCAACGGCTTCGGAGGTGGCGGGGGAAGTTGAGGGCGAGAGAGTACGCCAGCGAGGAGAATTAGAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGGACAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAAACTTTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTCCGGGCCAAGGACTAAAACATTACCGGCTAAAAGAAGAAAATTGAAAACAAAAAGGGCAAGAAGACAATGATAAGGTTTTCAGCATTTTCAGAGTTCGAAATCAAGCAATTTGACAAGGTGGAGTTGTTTTCGGCGCATCTGCAAAAAAAAATTTTGGCTTTAAAAATTGTTTGTCTGAAATTTCCAAATTTTTAGCTCTAGAATGTTCTAGAATGGTCTAAAAATGATCCAAAAAAGTATTTAAAAAACTTTGCCACCGAGAGGAATCGAACCCGGGTCGTCAGATTGGTAGTTGAGAAATCCAC</canonical>
            <polymorphic>CGCGGTTAAATGGTGGGGGCGCAGAGGGCGCCTCTCCACTTCTCAGGCGAGGGAAACAGTAAATCCTGAAAATCAAAAAAAGCGGAGAAATCTAAAAATTAACCATTTTTTCCAGATTTTCAACATTATCGTAATGGAGAGAAGCTCGAAAAGTTGGTCGCCATTCATTCCAGACTGGGAGAGAGTGTTCTCGACTGTCGAGAGAGAAGTTGCAGATAATGAAGACTGGTAAACTGTAGTTTGTAGTTTGTGCTTTGTAGTCCTGATTTTTTTTTCTTTTTTCGAAGATAAATTACTTCTATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTTTATGTTCAAGAGTCATTAACTGCCCCGAACGGTCCTTGTTCGGGATTCCAGAATCCGCCGATCAACGGCTTCGGAGGTGGCGGKGGAAGTTGAGGGCGAGAGAGTACGCCAGCGAGGAGAATTAGAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGGACAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAAACTTTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTCCGGGCCAAGGACTAAAACATTACCGGCTAAAAGAAGAAAATTGAAAACAAAAAGGGCAAGAAGACAATGATAAGGTTTTCAGCATTTTCAGAGTTCGAAATCAAGCAATTTGACAAGGTGGAGTTGTTTTCGGCGCATCTGCAAAAAAAAATTTTGGCTTTAAAAATTGTTTGTCTGAAATTTCCAAATTTTTAGCTCTAGAATGTTCTAGAATGGTCTAAAAATGATCCAAAAAAGTATTTAAAAAACTTTGCCACCGAGAGGAATCGAACCCGGGTCGTCAGATTGGTAGTTGAGAAATCCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGGACCGGTTTTTGTAT</pcr_primer_p1>
		<pcr_primer_p2>TCTTTTCTCTCTTTCTGATTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>ATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTTTATGTTCAAGAGTCATTAACTGCCCCGAACGGTCCTTGTTCGGGATTCCAGAATCCGCCGATCAACGGCTTCGGAGGTGGCGGGGGAAGTTGAGGGCGAGAGAGTACGCCAGCGAGGAGAATTAGAGAAATCAGAAAGAGAGAAAAGA</canonical_amplicon>
		<polymorphic_amplicon>ATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTTTATGTTCAAGAGTCATTAACTGCCCCGAACGGTCCTTGTTCGGGATTCCAGAATCCGCCGATCAACGGCTTCGGAGGTGGCGGKGGAAGTTGAGGGCGAGAGAGTACGCCAGCGAGGAGAATTAGAGAAATCAGAAAGAGAGAAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25005</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>20782</contig_pos>
        <strand>+</strand>
        <context>GAGGAGAATT[A/T]GAGAAATCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGGTGGCGGGGGAAGTTGAGGGCGAGAGAGTACGCCAGCGAGGAGAATT</left_flank>
        <right_flank>GAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCAGGCGAGGGAAACAGTAAATCCTGAAAATCAAAAAAAGCGGAGAAATCTAAAAATTAACCATTTTTTCCAGATTTTCAACATTATCGTAATGGAGAGAAGCTCGAAAAGTTGGTCGCCATTCATTCCAGACTGGGAGAGAGTGTTCTCGACTGTCGAGAGAGAAGTTGCAGATAATGAAGACTGGTAAACTGTAGTTTGTAGTTTGTGCTTTGTAGTCCTGATTTTTTTTTCTTTTTTCGAAGATAAATTACTTCTATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTTTATGTTCAAGAGTCATTAACTGCCCCGAACGGTCCTTGTTCGGGATTCCAGAATCCGCCGATCAACGGCTTCGGAGGTGGCGGGGGAAGTTGAGGGCGAGAGAGTACGCCAGCGAGGAGAATTAGAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGGACAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAAACTTTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTCCGGGCCAAGGACTAAAACATTACCGGCTAAAAGAAGAAAATTGAAAACAAAAAGGGCAAGAAGACAATGATAAGGTTTTCAGCATTTTCAGAGTTCGAAATCAAGCAATTTGACAAGGTGGAGTTGTTTTCGGCGCATCTGCAAAAAAAAATTTTGGCTTTAAAAATTGTTTGTCTGAAATTTCCAAATTTTTAGCTCTAGAATGTTCTAGAATGGTCTAAAAATGATCCAAAAAAGTATTTAAAAAACTTTGCCACCGAGAGGAATCGAACCCGGGTCGTCAGATTGGTAGTTGAGAAATCCACTGAGCCAAATGCCCAGATTTTCGAAAATGTGCTATTTTAA</canonical>
            <polymorphic>TCTCAGGCGAGGGAAACAGTAAATCCTGAAAATCAAAAAAAGCGGAGAAATCTAAAAATTAACCATTTTTTCCAGATTTTCAACATTATCGTAATGGAGAGAAGCTCGAAAAGTTGGTCGCCATTCATTCCAGACTGGGAGAGAGTGTTCTCGACTGTCGAGAGAGAAGTTGCAGATAATGAAGACTGGTAAACTGTAGTTTGTAGTTTGTGCTTTGTAGTCCTGATTTTTTTTTCTTTTTTCGAAGATAAATTACTTCTATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTTTATGTTCAAGAGTCATTAACTGCCCCGAACGGTCCTTGTTCGGGATTCCAGAATCCGCCGATCAACGGCTTCGGAGGTGGCGGGGGAAGTTGAGGGCGAGAGAGTACGCCAGCGAGGAGAATTWGAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGGACAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAAACTTTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTCCGGGCCAAGGACTAAAACATTACCGGCTAAAAGAAGAAAATTGAAAACAAAAAGGGCAAGAAGACAATGATAAGGTTTTCAGCATTTTCAGAGTTCGAAATCAAGCAATTTGACAAGGTGGAGTTGTTTTCGGCGCATCTGCAAAAAAAAATTTTGGCTTTAAAAATTGTTTGTCTGAAATTTCCAAATTTTTAGCTCTAGAATGTTCTAGAATGGTCTAAAAATGATCCAAAAAAGTATTTAAAAAACTTTGCCACCGAGAGGAATCGAACCCGGGTCGTCAGATTGGTAGTTGAGAAATCCACTGAGCCAAATGCCCAGATTTTCGAAAATGTGCTATTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGGACCGGTTTTTGTAT</pcr_primer_p1>
		<pcr_primer_p2>GAAATTTCGAATTTAGCAAACA</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>ATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTTTATGTTCAAGAGTCATTAACTGCCCCGAACGGTCCTTGTTCGGGATTCCAGAATCCGCCGATCAACGGCTTCGGAGGTGGCGGGGGAAGTTGAGGGCGAGAGAGTACGCCAGCGAGGAGAATTAGAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGGACAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAAACTTTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTC</canonical_amplicon>
		<polymorphic_amplicon>ATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTTTATGTTCAAGAGTCATTAACTGCCCCGAACGGTCCTTGTTCGGGATTCCAGAATCCGCCGATCAACGGCTTCGGAGGTGGCGGGGGAAGTTGAGGGCGAGAGAGTACGCCAGCGAGGAGAATTWGAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGGACAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAAACTTTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25006</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>20847</contig_pos>
        <strand>+</strand>
        <context>ATGTATTGGG[A/G]CAACTTTTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGG</left_flank>
        <right_flank>CAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTCCAGATTTTCAACATTATCGTAATGGAGAGAAGCTCGAAAAGTTGGTCGCCATTCATTCCAGACTGGGAGAGAGTGTTCTCGACTGTCGAGAGAGAAGTTGCAGATAATGAAGACTGGTAAACTGTAGTTTGTAGTTTGTGCTTTGTAGTCCTGATTTTTTTTTCTTTTTTCGAAGATAAATTACTTCTATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTTTATGTTCAAGAGTCATTAACTGCCCCGAACGGTCCTTGTTCGGGATTCCAGAATCCGCCGATCAACGGCTTCGGAGGTGGCGGGGGAAGTTGAGGGCGAGAGAGTACGCCAGCGAGGAGAATTAGAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGGACAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAAACTTTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTCCGGGCCAAGGACTAAAACATTACCGGCTAAAAGAAGAAAATTGAAAACAAAAAGGGCAAGAAGACAATGATAAGGTTTTCAGCATTTTCAGAGTTCGAAATCAAGCAATTTGACAAGGTGGAGTTGTTTTCGGCGCATCTGCAAAAAAAAATTTTGGCTTTAAAAATTGTTTGTCTGAAATTTCCAAATTTTTAGCTCTAGAATGTTCTAGAATGGTCTAAAAATGATCCAAAAAAGTATTTAAAAAACTTTGCCACCGAGAGGAATCGAACCCGGGTCGTCAGATTGGTAGTTGAGAAATCCACTGAGCCAAATGCCCAGATTTTCGAAAATGTGCTATTTTAACGGTTTTCAAAATGTTTTTTAATGGTTTAAAGCTTATGTTGCGTTTTAAAACCTTTAAAAATGCA</canonical>
            <polymorphic>TTTTTTCCAGATTTTCAACATTATCGTAATGGAGAGAAGCTCGAAAAGTTGGTCGCCATTCATTCCAGACTGGGAGAGAGTGTTCTCGACTGTCGAGAGAGAAGTTGCAGATAATGAAGACTGGTAAACTGTAGTTTGTAGTTTGTGCTTTGTAGTCCTGATTTTTTTTTCTTTTTTCGAAGATAAATTACTTCTATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTTTATGTTCAAGAGTCATTAACTGCCCCGAACGGTCCTTGTTCGGGATTCCAGAATCCGCCGATCAACGGCTTCGGAGGTGGCGGGGGAAGTTGAGGGCGAGAGAGTACGCCAGCGAGGAGAATTAGAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGGRCAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAAACTTTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTCCGGGCCAAGGACTAAAACATTACCGGCTAAAAGAAGAAAATTGAAAACAAAAAGGGCAAGAAGACAATGATAAGGTTTTCAGCATTTTCAGAGTTCGAAATCAAGCAATTTGACAAGGTGGAGTTGTTTTCGGCGCATCTGCAAAAAAAAATTTTGGCTTTAAAAATTGTTTGTCTGAAATTTCCAAATTTTTAGCTCTAGAATGTTCTAGAATGGTCTAAAAATGATCCAAAAAAGTATTTAAAAAACTTTGCCACCGAGAGGAATCGAACCCGGGTCGTCAGATTGGTAGTTGAGAAATCCACTGAGCCAAATGCCCAGATTTTCGAAAATGTGCTATTTTAACGGTTTTCAAAATGTTTTTTAATGGTTTAAAGCTTATGTTGCGTTTTAAAACCTTTAAAAATGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAATCAGAAAGAGAGAAAAGA</pcr_primer_p1>
		<pcr_primer_p2>CTGAAAATGCTGAAAACCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGGACAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAAACTTTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTCCGGGCCAAGGACTAAAACATTACCGGCTAAAAGAAGAAAATTGAAAACAAAAAGGGCAAGAAGACAATGATAAGGTTTTCAGCATTTTCAG</canonical_amplicon>
		<polymorphic_amplicon>GAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGGRCAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAAACTTTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTCCGGGCCAAGGACTAAAACATTACCGGCTAAAAGAAGAAAATTGAAAACAAAAAGGGCAAGAAGACAATGATAAGGTTTTCAGCATTTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25007</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>20951</contig_pos>
        <strand>+</strand>
        <context>GCCAAGGACT[A/T]AAACATTACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTCCGGGCCAAGGACT</left_flank>
        <right_flank>AAACATTACCGGCTAAAAGAAGAAAATTGAAAACAAAAAGGGCAAGAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCAGATAATGAAGACTGGTAAACTGTAGTTTGTAGTTTGTGCTTTGTAGTCCTGATTTTTTTTTCTTTTTTCGAAGATAAATTACTTCTATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTTTATGTTCAAGAGTCATTAACTGCCCCGAACGGTCCTTGTTCGGGATTCCAGAATCCGCCGATCAACGGCTTCGGAGGTGGCGGGGGAAGTTGAGGGCGAGAGAGTACGCCAGCGAGGAGAATTAGAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGGACAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAAACTTTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTCCGGGCCAAGGACTAAAACATTACCGGCTAAAAGAAGAAAATTGAAAACAAAAAGGGCAAGAAGACAATGATAAGGTTTTCAGCATTTTCAGAGTTCGAAATCAAGCAATTTGACAAGGTGGAGTTGTTTTCGGCGCATCTGCAAAAAAAAATTTTGGCTTTAAAAATTGTTTGTCTGAAATTTCCAAATTTTTAGCTCTAGAATGTTCTAGAATGGTCTAAAAATGATCCAAAAAAGTATTTAAAAAACTTTGCCACCGAGAGGAATCGAACCCGGGTCGTCAGATTGGTAGTTGAGAAATCCACTGAGCCAAATGCCCAGATTTTCGAAAATGTGCTATTTTAACGGTTTTCAAAATGTTTTTTAATGGTTTAAAGCTTATGTTGCGTTTTAAAACCTTTAAAAATGCATATAAAATTTGCAGAATTCATATTTAGAGGCAGTTATGAGGGATGAAACTTTGTTTAGCACAGAAATTTCGAAAATTCGGATTTTTATCGAATTCTGGAATTAA</canonical>
            <polymorphic>TTGCAGATAATGAAGACTGGTAAACTGTAGTTTGTAGTTTGTGCTTTGTAGTCCTGATTTTTTTTTCTTTTTTCGAAGATAAATTACTTCTATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTTTATGTTCAAGAGTCATTAACTGCCCCGAACGGTCCTTGTTCGGGATTCCAGAATCCGCCGATCAACGGCTTCGGAGGTGGCGGGGGAAGTTGAGGGCGAGAGAGTACGCCAGCGAGGAGAATTAGAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGGACAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAAACTTTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTCCGGGCCAAGGACTWAAACATTACCGGCTAAAAGAAGAAAATTGAAAACAAAAAGGGCAAGAAGACAATGATAAGGTTTTCAGCATTTTCAGAGTTCGAAATCAAGCAATTTGACAAGGTGGAGTTGTTTTCGGCGCATCTGCAAAAAAAAATTTTGGCTTTAAAAATTGTTTGTCTGAAATTTCCAAATTTTTAGCTCTAGAATGTTCTAGAATGGTCTAAAAATGATCCAAAAAAGTATTTAAAAAACTTTGCCACCGAGAGGAATCGAACCCGGGTCGTCAGATTGGTAGTTGAGAAATCCACTGAGCCAAATGCCCAGATTTTCGAAAATGTGCTATTTTAACGGTTTTCAAAATGTTTTTTAATGGTTTAAAGCTTATGTTGCGTTTTAAAACCTTTAAAAATGCATATAAAATTTGCAGAATTCATATTTAGAGGCAGTTATGAGGGATGAAACTTTGTTTAGCACAGAAATTTCGAAAATTCGGATTTTTATCGAATTCTGGAATTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAATCAGAAAGAGAGAAAAGA</pcr_primer_p1>
		<pcr_primer_p2>CTGAAAATGCTGAAAACCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGGACAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAAACTTTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTCCGGGCCAAGGACTAAAACATTACCGGCTAAAAGAAGAAAATTGAAAACAAAAAGGGCAAGAAGACAATGATAAGGTTTTCAGCATTTTCAG</canonical_amplicon>
		<polymorphic_amplicon>GAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGGACAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAAACTTTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTCCGGGCCAAGGACTWAAACATTACCGGCTAAAAGAAGAAAATTGAAAACAAAAAGGGCAAGAAGACAATGATAAGGTTTTCAGCATTTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25008</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>20964</contig_pos>
        <strand>+</strand>
        <context>ACATTACCGG[C/T]TAAAARAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGTTTGCTAAATTCGAAATTTCCGGGCCAAGGACTAAAACATTACCGG</left_flank>
        <right_flank>TAAAAGAAGAAAATTGAAAACAAAAAGGGCAAGAAGACAATGATAAGGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGACTGGTAAACTGTAGTTTGTAGTTTGTGCTTTGTAGTCCTGATTTTTTTTTCTTTTTTCGAAGATAAATTACTTCTATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTTTATGTTCAAGAGTCATTAACTGCCCCGAACGGTCCTTGTTCGGGATTCCAGAATCCGCCGATCAACGGCTTCGGAGGTGGCGGGGGAAGTTGAGGGCGAGAGAGTACGCCAGCGAGGAGAATTAGAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGGACAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAAACTTTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTCCGGGCCAAGGACTAAAACATTACCGGCTAAAAGAAGAAAATTGAAAACAAAAAGGGCAAGAAGACAATGATAAGGTTTTCAGCATTTTCAGAGTTCGAAATCAAGCAATTTGACAAGGTGGAGTTGTTTTCGGCGCATCTGCAAAAAAAAATTTTGGCTTTAAAAATTGTTTGTCTGAAATTTCCAAATTTTTAGCTCTAGAATGTTCTAGAATGGTCTAAAAATGATCCAAAAAAGTATTTAAAAAACTTTGCCACCGAGAGGAATCGAACCCGGGTCGTCAGATTGGTAGTTGAGAAATCCACTGAGCCAAATGCCCAGATTTTCGAAAATGTGCTATTTTAACGGTTTTCAAAATGTTTTTTAATGGTTTAAAGCTTATGTTGCGTTTTAAAACCTTTAAAAATGCATATAAAATTTGCAGAATTCATATTTAGAGGCAGTTATGAGGGATGAAACTTTGTTTAGCACAGAAATTTCGAAAATTCGGATTTTTATCGAATTCTGGAATTAAAAAAGGTTGGAGT</canonical>
            <polymorphic>AGACTGGTAAACTGTAGTTTGTAGTTTGTGCTTTGTAGTCCTGATTTTTTTTTCTTTTTTCGAAGATAAATTACTTCTATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTTTATGTTCAAGAGTCATTAACTGCCCCGAACGGTCCTTGTTCGGGATTCCAGAATCCGCCGATCAACGGCTTCGGAGGTGGCGGGGGAAGTTGAGGGCGAGAGAGTACGCCAGCGAGGAGAATTAGAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGGACAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAAACTTTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTCCGGGCCAAGGACTAAAACATTACCGGYTAAAAGAAGAAAATTGAAAACAAAAAGGGCAAGAAGACAATGATAAGGTTTTCAGCATTTTCAGAGTTCGAAATCAAGCAATTTGACAAGGTGGAGTTGTTTTCGGCGCATCTGCAAAAAAAAATTTTGGCTTTAAAAATTGTTTGTCTGAAATTTCCAAATTTTTAGCTCTAGAATGTTCTAGAATGGTCTAAAAATGATCCAAAAAAGTATTTAAAAAACTTTGCCACCGAGAGGAATCGAACCCGGGTCGTCAGATTGGTAGTTGAGAAATCCACTGAGCCAAATGCCCAGATTTTCGAAAATGTGCTATTTTAACGGTTTTCAAAATGTTTTTTAATGGTTTAAAGCTTATGTTGCGTTTTAAAACCTTTAAAAATGCATATAAAATTTGCAGAATTCATATTTAGAGGCAGTTATGAGGGATGAAACTTTGTTTAGCACAGAAATTTCGAAAATTCGGATTTTTATCGAATTCTGGAATTAAAAAAGGTTGGAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>505 410 85</canonical_bands>
                <polymorphic_bands>915 85</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>262 215 150 131 114 68 38 22</canonical_bands>
                <polymorphic_bands>262 215 153 150 114 68 38</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAAATCAGAAAGAGAGAAAAGA</pcr_primer_p1>
		<pcr_primer_p2>CTGAAAATGCTGAAAACCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGGACAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAAACTTTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTCCGGGCCAAGGACTAAAACATTACCGGCTAAAAGAAGAAAATTGAAAACAAAAAGGGCAAGAAGACAATGATAAGGTTTTCAGCATTTTCAG</canonical_amplicon>
		<polymorphic_amplicon>GAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGGACAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAAACTTTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTCCGGGCCAAGGACTAAAACATTACCGGYTAAAAGAAGAAAATTGAAAACAAAAAGGGCAAGAAGACAATGATAAGGTTTTCAGCATTTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25009</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>20970</contig_pos>
        <strand>+</strand>
        <context>CCGGYTAAAA[A/G]AAGAAAATTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCTAAATTCGAAATTTCCGGGCCAAGGACTAAAACATTACCGGCTAAAA</left_flank>
        <right_flank>AAGAAAATTGAAAACAAAAAGGGCAAGAAGACAATGATAAGGTTTTCAGC</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAAACTGTAGTTTGTAGTTTGTGCTTTGTAGTCCTGATTTTTTTTTCTTTTTTCGAAGATAAATTACTTCTATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTTTATGTTCAAGAGTCATTAACTGCCCCGAACGGTCCTTGTTCGGGATTCCAGAATCCGCCGATCAACGGCTTCGGAGGTGGCGGGGGAAGTTGAGGGCGAGAGAGTACGCCAGCGAGGAGAATTAGAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGGACAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAAACTTTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTCCGGGCCAAGGACTAAAACATTACCGGCTAAAAGAAGAAAATTGAAAACAAAAAGGGCAAGAAGACAATGATAAGGTTTTCAGCATTTTCAGAGTTCGAAATCAAGCAATTTGACAAGGTGGAGTTGTTTTCGGCGCATCTGCAAAAAAAAATTTTGGCTTTAAAAATTGTTTGTCTGAAATTTCCAAATTTTTAGCTCTAGAATGTTCTAGAATGGTCTAAAAATGATCCAAAAAAGTATTTAAAAAACTTTGCCACCGAGAGGAATCGAACCCGGGTCGTCAGATTGGTAGTTGAGAAATCCACTGAGCCAAATGCCCAGATTTTCGAAAATGTGCTATTTTAACGGTTTTCAAAATGTTTTTTAATGGTTTAAAGCTTATGTTGCGTTTTAAAACCTTTAAAAATGCATATAAAATTTGCAGAATTCATATTTAGAGGCAGTTATGAGGGATGAAACTTTGTTTAGCACAGAAATTTCGAAAATTCGGATTTTTATCGAATTCTGGAATTAAAAAAGGTTGGAGTTTTGCT</canonical>
            <polymorphic>GTAAACTGTAGTTTGTAGTTTGTGCTTTGTAGTCCTGATTTTTTTTTCTTTTTTCGAAGATAAATTACTTCTATTTGGACCGGTTTTTGTATTCGAATTGAATTTGAGTTGAAAAATTGAAAAATCAAGAATTAAACAATAAAAAAAATTTTTTTAATAAAAAATGATTTATTCAAAATTCAAAATTTTATGTTCAAGAGTCATTAACTGCCCCGAACGGTCCTTGTTCGGGATTCCAGAATCCGCCGATCAACGGCTTCGGAGGTGGCGGGGGAAGTTGAGGGCGAGAGAGTACGCCAGCGAGGAGAATTAGAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGGACAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAAACTTTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTCCGGGCCAAGGACTAAAACATTACCGGCTAAAARAAGAAAATTGAAAACAAAAAGGGCAAGAAGACAATGATAAGGTTTTCAGCATTTTCAGAGTTCGAAATCAAGCAATTTGACAAGGTGGAGTTGTTTTCGGCGCATCTGCAAAAAAAAATTTTGGCTTTAAAAATTGTTTGTCTGAAATTTCCAAATTTTTAGCTCTAGAATGTTCTAGAATGGTCTAAAAATGATCCAAAAAAGTATTTAAAAAACTTTGCCACCGAGAGGAATCGAACCCGGGTCGTCAGATTGGTAGTTGAGAAATCCACTGAGCCAAATGCCCAGATTTTCGAAAATGTGCTATTTTAACGGTTTTCAAAATGTTTTTTAATGGTTTAAAGCTTATGTTGCGTTTTAAAACCTTTAAAAATGCATATAAAATTTGCAGAATTCATATTTAGAGGCAGTTATGAGGGATGAAACTTTGTTTAGCACAGAAATTTCGAAAATTCGGATTTTTATCGAATTCTGGAATTAAAAAAGGTTGGAGTTTTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAATCAGAAAGAGAGAAAAGA</pcr_primer_p1>
		<pcr_primer_p2>CTGAAAATGCTGAAAACCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGGACAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAAACTTTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTCCGGGCCAAGGACTAAAACATTACCGGCTAAAAGAAGAAAATTGAAAACAAAAAGGGCAAGAAGACAATGATAAGGTTTTCAGCATTTTCAG</canonical_amplicon>
		<polymorphic_amplicon>GAGAAATCAGAAAGAGAGAAAAGACGAATTTCAGCATTTTCAGACATAAAATACATGTATTGGGACAACTTTTTATACTCAAAAAACAGAGAAAACTAGTTTTTATAATTTTCAAACTTTAAATTGCGAAATTTGTTTGCTAAATTCGAAATTTCCGGGCCAAGGACTAAAACATTACCGGCTAAAARAAGAAAATTGAAAACAAAAAGGGCAAGAAGACAATGATAAGGTTTTCAGCATTTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25010</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>23389</contig_pos>
        <strand></strand>
        <context>gaatggtagg[C/T]caactttaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTTCCTCCTGCGCCCACCCTCCTAGGAGGAGCGCCTCAGGAATGGTAGG</left_flank>
        <right_flank>CAACTTTAAAGACGCATAGCTCAAAAACTACAGTAGCTAAAATTGTTTTG</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGCATGCATTTTGGTTCTTTTTTTCCTTCTCTTGGAGATAGGTGGTTTTTATATTTTTTGTAGTCAGGAAATACGGGATAATTCTGGAAATTTAGGAAACTCCTTATCCTTTTATTGCCCTTTAAACTCCAGAAAGTGGGCGGAGCTTCCTAGAAGAAAGTGGGCGGAGTTTCTAGCCATGTGTATCCTTTTCAAGCTAATAATTATTAAAGTGTTTCAATTATCCTTTTTTAAGCACCTCCTCCCCTCTTCCCATTTACAGAATTGTAGCTTTCTTAGAATCCCCCATTTGACCCTAATTATCTCGATTCACAATATAGTTACAAAAAAGGTGCCAACTAAAAAAATGTTGGAAATTTTATTTTACTTATTTTACTTGTTGACAACTTTTTTGTAACTTTCTTGGTTTCGGAGATATGCGCCTTTAAAGTTGACCTCCCCCGGCGCCCCTTCCTCCTGCGCCCACCCTCCTAGGAGGAGCGCCTCAGGAATGGTAGGCCAACTTTAAAGACGCATAGCTCAAAAACTACAGTAGCTAAAATTGTTTTGTTAATCAGTAAAATGTGCAGAATTAAATTTTACACATTTTATTACAACTTTTGAGTGACTCTTTTGGTTTTTGAGATATGCGCCTTTAAAAATAGGGTGCCTCTAGTCTCGGAAGAGGGGAGACGTACCCCTATTTTAAAGGCGCATAGCTCAATAACCACAAAAGTTACAAAAATGCTGTCAATTAGTAAAATGTGTAAAATTAAATTTCCTACATTTTACTAGTTGAGAACTTTTTGATATCTTTATTAGAACTTGAGTTATTCACTAATAAGTGTCTGATAATTACCAGTTCCCTATCTAAACTCACCGCCAAAAGAGGCATAAACAAAAAGGAAACTATGTCAACATTGTAAACATGCATATTTATTCATTTTCTCCTCTTTTATCGGAGAGTCATCACCCCCATTTGACCGCTTTTATCACTAAAAAATGCTCTTCTCTAACCAC</canonical>
            <polymorphic>GTGCATGCATTTTGGTTCTTTTTTTCCTTCTCTTGGAGATAGGTGGTTTTTATATTTTTTGTAGTCAGGAAATACGGGATAATTCTGGAAATTTAGGAAACTCCTTATCCTTTTATTGCCCTTTAAACTCCAGAAAGTGGGCGGAGCTTCCTAGAAGAAAGTGGGCGGAGTTTCTAGCCATGTGTATCCTTTTCAAGCTAATAATTATTAAAGTGTTTCAATTATCCTTTTTTAAGCACCTCCTCCCCTCTTCCCATTTACAGAATTGTAGCTTTCTTAGAATCCCCCATTTGACCCTAATTATCTCGATTCACAATATAGTTACAAAAAAGGTGCCAACTAAAAAAATGTTGGAAATTTTATTTTACTTATTTTACTTGTTGACAACTTTTTTGTAACTTTCTTGGTTTCGGAGATATGCGCCTTTAAAGTTGACCTCCCCCGGCGCCCCTTCCTCCTGCGCCCACCCTCCTAGGAGGAGCGCCTCAGGAATGGTAGGYCAACTTTAAAGACGCATAGCTCAAAAACTACAGTAGCTAAAATTGTTTTGTTAATCAGTAAAATGTGCAGAATTAAATTTTACACATTTTATTACAACTTTTGAGTGACTCTTTTGGTTTTTGAGATATGCGCCTTTAAAAATAGGGTGCCTCTAGTCTCGGAAGAGGGGAGACGTACCCCTATTTTAAAGGCGCATAGCTCAATAACCACAAAAGTTACAAAAATGCTGTCAATTAGTAAAATGTGTAAAATTAAATTTCCTACATTTTACTAGTTGAGAACTTTTTGATATCTTTATTAGAACTTGAGTTATTCACTAATAAGTGTCTGATAATTACCAGTTCCCTATCTAAACTCACCGCCAAAAGAGGCATAAACAAAAAGGAAACTATGTCAACATTGTAAACATGCATATTTATTCATTTTCTCCTCTTTTATCGGAGAGTCATCACCCCCATTTGACCGCTTTTATCACTAAAAAATGCTCTTCTCTAACCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>301 228 163 146 74 31 20 20 17</canonical_bands>
                <polymorphic_bands>301 248 163 146 74 31 20 17</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCCTAATTATCTCGATTCACA</pcr_primer_p1>
		<pcr_primer_p2>TGAGTTTAGATAGGGAACTGGTA</pcr_primer_p2>
		<pcr_amplicon_size>566</pcr_amplicon_size>
		<canonical_amplicon>ACCCTAATTATCTCGATTCACAATATAGTTACAAAAAAGGTGCCAACTAAAAAAATGTTGGAAATTTTATTTTACTTATTTTACTTGTTGACAACTTTTTTGTAACTTTCTTGGTTTCGGAGATATGCGCCTTTAAAGTTGACCTCCCCCGGCGCCCCTTCCTCCTGCGCCCACCCTCCTAGGAGGAGCGCCTCAGGAATGGTAGGCCAACTTTAAAGACGCATAGCTCAAAAACTACAGTAGCTAAAATTGTTTTGTTAATCAGTAAAATGTGCAGAATTAAATTTTACACATTTTATTACAACTTTTGAGTGACTCTTTTGGTTTTTGAGATATGCGCCTTTAAAAATAGGGTGCCTCTAGTCTCGGAAGAGGGGAGACGTACCCCTATTTTAAAGGCGCATAGCTCAATAACCACAAAAGTTACAAAAATGCTGTCAATTAGTAAAATGTGTAAAATTAAATTTCCTACATTTTACTAGTTGAGAACTTTTTGATATCTTTATTAGAACTTGAGTTATTCACTAATAAGTGTCTGATAATTACCAGTTCCCTATCTAAACTCA</canonical_amplicon>
		<polymorphic_amplicon>ACCCTAATTATCTCGATTCACAATATAGTTACAAAAAAGGTGCCAACTAAAAAAATGTTGGAAATTTTATTTTACTTATTTTACTTGTTGACAACTTTTTTGTAACTTTCTTGGTTTCGGAGATATGCGCCTTTAAAGTTGACCTCCCCCGGCGCCCCTTCCTCCTGCGCCCACCCTCCTAGGAGGAGCGCCTCAGGAATGGTAGGYCAACTTTAAAGACGCATAGCTCAAAAACTACAGTAGCTAAAATTGTTTTGTTAATCAGTAAAATGTGCAGAATTAAATTTTACACATTTTATTACAACTTTTGAGTGACTCTTTTGGTTTTTGAGATATGCGCCTTTAAAAATAGGGTGCCTCTAGTCTCGGAAGAGGGGAGACGTACCCCTATTTTAAAGGCGCATAGCTCAATAACCACAAAAGTTACAAAAATGCTGTCAATTAGTAAAATGTGTAAAATTAAATTTCCTACATTTTACTAGTTGAGAACTTTTTGATATCTTTATTAGAACTTGAGTTATTCACTAATAAGTGTCTGATAATTACCAGTTCCCTATCTAAACTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25011</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>27777</contig_pos>
        <strand></strand>
        <context>ttaaagatta[T/C]gggcactgag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AACTTTCTTATAGCACTTTTGGTTTTTGAGTTATGCGCCTTTAAAGATTA</left_flank>
        <right_flank>GGGCACTGAGGCAATGGCGCCTGAAAGAGAGGCGCGCCAACTTTAAAGGC</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCAACAAGTATCGTTTTCAAGGTTTTTTAGTGAGGTACTTGTGATTTTTTATATTTTCCTCCGACCAAAATTTTTTTGTCTGGACAGGATAAATGTGATCCGTAAAGCATTGTGTGTGCATTTTCCAAAAGACAAAAGCCGTTTTTTTCCTTGTTTGGAGAAGGGGAAAACGGTTCTCTGTTTCTCTGCGTCTCTCTATCTCTAAGCCCCCCCTAAGCTCAATTGAAATTCGGATTAGGCTTTGTTTGATGTTTATCCCCCCACTATGGGAAAAAGCGCATTTTGTTCTCGTTTTTTCGGATTTTTTCCTTTTTTAAGTTTTGGATTTTGGAATTTTAAAACTTTCCGGTAATTCTTCAAGCGTTCTTATACGGTCGGTGGTATAGAGGAGGGTCTAAACAGTTTAATGTGTACTAAGCAAGACTAGAGCTTTATTTTTGTAGTTGACAACTTTCTTATAGCACTTTTGGTTTTTGAGTTATGCGCCTTTAAAGATTATGGGCACTGAGGCAATGGCGCCTGAAAGAGAGGCGCGCCAACTTTAAAGGCCCATAGCTCAAAAACCAGAAAAGTTACAAAAAAGTTGTCAATTACAAAAATGAAGCTCTAGCCTTTTTTAGTTTACGGCGCAAATTTCTGGACCCTTGCTAACACGGTTTTTGAGCTATGCGCCTTTAACAATGAGGTGCCCTCTCCCCTCTTCCGGGCGCCTCGCCCAGAGGTACCTTATCTTTAAAGGCGCACTCAAAAACCAAAAGAGCTACAAAAAAGTAGTCAACTGCAAAAATGAAGCTCTAGTCTTGTTTAGTGTGATTTATAAATTTTTCTCAATTTCCGGTCGTTTAGAAGCTTCCTAATTCATCGAAGAACCTTGACACCATATGTTTGAAATGAATCCTGTCACCCTGAAAACCATATGGGATAGTATACCGCTTAATCTCAATATATTTCACACACACACACAGGAAACAGACGGTGGGGTGACTTTTGGGGAGAAAA</canonical>
            <polymorphic>CCCAACAAGTATCGTTTTCAAGGTTTTTTAGTGAGGTACTTGTGATTTTTTATATTTTCCTCCGACCAAAATTTTTTTGTCTGGACAGGATAAATGTGATCCGTAAAGCATTGTGTGTGCATTTTCCAAAAGACAAAAGCCGTTTTTTTCCTTGTTTGGAGAAGGGGAAAACGGTTCTCTGTTTCTCTGCGTCTCTCTATCTCTAAGCCCCCCCTAAGCTCAATTGAAATTCGGATTAGGCTTTGTTTGATGTTTATCCCCCCACTATGGGAAAAAGCGCATTTTGTTCTCGTTTTTTCGGATTTTTTCCTTTTTTAAGTTTTGGATTTTGGAATTTTAAAACTTTCCGGTAATTCTTCAAGCGTTCTTATACGGTCGGTGGTATAGAGGAGGGTCTAAACAGTTTAATGTGTACTAAGCAAGACTAGAGCTTTATTTTTGTAGTTGACAACTTTCTTATAGCACTTTTGGTTTTTGAGTTATGCGCCTTTAAAGATTAYGGGCACTGAGGCAATGGCGCCTGAAAGAGAGGCGCGCCAACTTTAAAGGCCCATAGCTCAAAAACCAGAAAAGTTACAAAAAAGTTGTCAATTACAAAAATGAAGCTCTAGCCTTTTTTAGTTTACGGCGCAAATTTCTGGACCCTTGCTAACACGGTTTTTGAGCTATGCGCCTTTAACAATGAGGTGCCCTCTCCCCTCTTCCGGGCGCCTCGCCCAGAGGTACCTTATCTTTAAAGGCGCACTCAAAAACCAAAAGAGCTACAAAAAAGTAGTCAACTGCAAAAATGAAGCTCTAGTCTTGTTTAGTGTGATTTATAAATTTTTCTCAATTTCCGGTCGTTTAGAAGCTTCCTAATTCATCGAAGAACCTTGACACCATATGTTTGAAATGAATCCTGTCACCCTGAAAACCATATGGGATAGTATACCGCTTAATCTCAATATATTTCACACACACACACAGGAAACAGACGGTGGGGTGACTTTTGGGGAGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTTTGGATTTTGGAATTTTA</pcr_primer_p1>
		<pcr_primer_p2>AGGTTCTTCGATGAATTAGGA</pcr_primer_p2>
		<pcr_amplicon_size>557</pcr_amplicon_size>
		<canonical_amplicon>AAGTTTTGGATTTTGGAATTTTAAAACTTTCCGGTAATTCTTCAAGCGTTCTTATACGGTCGGTGGTATAGAGGAGGGTCTAAACAGTTTAATGTGTACTAAGCAAGACTAGAGCTTTATTTTTGTAGTTGACAACTTTCTTATAGCACTTTTGGTTTTTGAGTTATGCGCCTTTAAAGATTATGGGCACTGAGGCAATGGCGCCTGAAAGAGAGGCGCGCCAACTTTAAAGGCCCATAGCTCAAAAACCAGAAAAGTTACAAAAAAGTTGTCAATTACAAAAATGAAGCTCTAGCCTTTTTTAGTTTACGGCGCAAATTTCTGGACCCTTGCTAACACGGTTTTTGAGCTATGCGCCTTTAACAATGAGGTGCCCTCTCCCCTCTTCCGGGCGCCTCGCCCAGAGGTACCTTATCTTTAAAGGCGCACTCAAAAACCAAAAGAGCTACAAAAAAGTAGTCAACTGCAAAAATGAAGCTCTAGTCTTGTTTAGTGTGATTTATAAATTTTTCTCAATTTCCGGTCGTTTAGAAGCTTCCTAATTCATCGAAGAACCT</canonical_amplicon>
		<polymorphic_amplicon>AAGTTTTGGATTTTGGAATTTTAAAACTTTCCGGTAATTCTTCAAGCGTTCTTATACGGTCGGTGGTATAGAGGAGGGTCTAAACAGTTTAATGTGTACTAAGCAAGACTAGAGCTTTATTTTTGTAGTTGACAACTTTCTTATAGCACTTTTGGTTTTTGAGTTATGCGCCTTTAAAGATTAYGGGCACTGAGGCAATGGCGCCTGAAAGAGAGGCGCGCCAACTTTAAAGGCCCATAGCTCAAAAACCAGAAAAGTTACAAAAAAGTTGTCAATTACAAAAATGAAGCTCTAGCCTTTTTTAGTTTACGGCGCAAATTTCTGGACCCTTGCTAACACGGTTTTTGAGCTATGCGCCTTTAACAATGAGGTGCCCTCTCCCCTCTTCCGGGCGCCTCGCCCAGAGGTACCTTATCTTTAAAGGCGCACTCAAAAACCAAAAGAGCTACAAAAAAGTAGTCAACTGCAAAAATGAAGCTCTAGTCTTGTTTAGTGTGATTTATAAATTTTTCTCAATTTCCGGTCGTTTAGAAGCTTCCTAATTCATCGAAGAACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25012</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>28982</contig_pos>
        <strand></strand>
        <context>ttatgacaaa[T/A]attttaccag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGCTACGAAGAAGTTGTCCACTAATGAAATGTGTAAAATTTTATGACAAA</left_flank>
        <right_flank>ATTTTACCAGCTTACAAAATTATTGTATCTTCAAAGGCAACTGAGATAAC</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCGTTAAAAATCTTTGGACCTAATTTTTCCACAAAAACGTTTACGGTCAAAAGGTACGGTAAGGGTCCAAAATGTTGTTATATATACTAAAAAAGAATAGAGCTTCATTTTTGTAATTGATAACTTTTTTGTAGCTCTTCTGGTTTTTGAGATATGCGTCTTTACATAAGCGCGGCGCCCGAAAAAACGGAGGGGCGCCTAGAGGCACCTTATTTTTAAAGGCGCATATCTCAAAAACCAAAAAAGCTACAAAAAAGTTATTACCTAATAAAATGTGTAAAAGTAAATTTGACACATTTTTCTAGTTAACCACTCTTTTGTAAATTTTTTGGTTTTTGTGTTATGCGCCTTTAAAAATAAGGTGCCTCTAGGCGCGGCACCCGTAAGAAGGCGGAGGGCACTAAAAGGCCCCTCGAATTTAAAGGCGCAGATCTCAAAAACCAAAAAAGCTACGAAGAAGTTGTCCACTAATGAAATGTGTAAAATTTTATGACAAATATTTTACCAGCTTACAAAATTATTGTATCTTCAAAGGCAACTGAGATAACCAGGCTTAAAGTAACGTCATCTAAATATTCTTTTTTTTTTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAATCCTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCATGTCATTGCTTTCCTTCGTTTTGTGTTCCTGGAGTATAAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAA</canonical>
            <polymorphic>ATTCGTTAAAAATCTTTGGACCTAATTTTTCCACAAAAACGTTTACGGTCAAAAGGTACGGTAAGGGTCCAAAATGTTGTTATATATACTAAAAAAGAATAGAGCTTCATTTTTGTAATTGATAACTTTTTTGTAGCTCTTCTGGTTTTTGAGATATGCGTCTTTACATAAGCGCGGCGCCCGAAAAAACGGAGGGGCGCCTAGAGGCACCTTATTTTTAAAGGCGCATATCTCAAAAACCAAAAAAGCTACAAAAAAGTTATTACCTAATAAAATGTGTAAAAGTAAATTTGACACATTTTTCTAGTTAACCACTCTTTTGTAAATTTTTTGGTTTTTGTGTTATGCGCCTTTAAAAATAAGGTGCCTCTAGGCGCGGCACCCGTAAGAAGGCGGAGGGCACTAAAAGGCCCCTCGAATTTAAAGGCGCAGATCTCAAAAACCAAAAAAGCTACGAAGAAGTTGTCCACTAATGAAATGTGTAAAATTTTATGACAAAWATTTTACCAGCTTACAAAATTATTGTATCTTCAAAGGCAACTGAGATAACCAGGCTTAAAGTAACGTCATCTAAATATTCTTTTTTTTTTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAATCCTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCATGTCATTGCTTTCCTTCGTTTTGTGTTCCTGGAGTATAAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 424 76</canonical_bands>
                <polymorphic_bands>576 424</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGACCTAATTTTTCCACAA</pcr_primer_p1>
		<pcr_primer_p2>ATTAGGAGAGGGAATGTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>593</pcr_amplicon_size>
		<canonical_amplicon>TGGACCTAATTTTTCCACAAAAACGTTTACGGTCAAAAGGTACGGTAAGGGTCCAAAATGTTGTTATATATACTAAAAAAGAATAGAGCTTCATTTTTGTAATTGATAACTTTTTTGTAGCTCTTCTGGTTTTTGAGATATGCGTCTTTACATAAGCGCGGCGCCCGAAAAAACGGAGGGGCGCCTAGAGGCACCTTATTTTTAAAGGCGCATATCTCAAAAACCAAAAAAGCTACAAAAAAGTTATTACCTAATAAAATGTGTAAAAGTAAATTTGACACATTTTTCTAGTTAACCACTCTTTTGTAAATTTTTTGGTTTTTGTGTTATGCGCCTTTAAAAATAAGGTGCCTCTAGGCGCGGCACCCGTAAGAAGGCGGAGGGCACTAAAAGGCCCCTCGAATTTAAAGGCGCAGATCTCAAAAACCAAAAAAGCTACGAAGAAGTTGTCCACTAATGAAATGTGTAAAATTTTATGACAAATATTTTACCAGCTTACAAAATTATTGTATCTTCAAAGGCAACTGAGATAACCAGGCTTAAAGTAACGTCATCTAAATATTCTTTTTTTTTTGAACATTCCCTCTCCTAAT</canonical_amplicon>
		<polymorphic_amplicon>TGGACCTAATTTTTCCACAAAAACGTTTACGGTCAAAAGGTACGGTAAGGGTCCAAAATGTTGTTATATATACTAAAAAAGAATAGAGCTTCATTTTTGTAATTGATAACTTTTTTGTAGCTCTTCTGGTTTTTGAGATATGCGTCTTTACATAAGCGCGGCGCCCGAAAAAACGGAGGGGCGCCTAGAGGCACCTTATTTTTAAAGGCGCATATCTCAAAAACCAAAAAAGCTACAAAAAAGTTATTACCTAATAAAATGTGTAAAAGTAAATTTGACACATTTTTCTAGTTAACCACTCTTTTGTAAATTTTTTGGTTTTTGTGTTATGCGCCTTTAAAAATAAGGTGCCTCTAGGCGCGGCACCCGTAAGAAGGCGGAGGGCACTAAAAGGCCCCTCGAATTTAAAGGCGCAGATCTCAAAAACCAAAAAAGCTACGAAGAAGTTGTCCACTAATGAAATGTGTAAAATTTTATGACAAAWATTTTACCAGCTTACAAAATTATTGTATCTTCAAAGGCAACTGAGATAACCAGGCTTAAAGTAACGTCATCTAAATATTCTTTTTTTTTTGAACATTCCCTCTCCTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25013</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>29063</contig_pos>
        <strand>+</strand>
        <context>CTAAATATTC[C/T]TTTTTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAAAGGCAACTGAGATAACCAGGCTTAAAGTAACGTCATCTAAATATTC</left_flank>
        <right_flank>TTTTTTTTTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAATCCTCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATATACTAAAAAAGAATAGAGCTTCATTTTTGTAATTGATAACTTTTTTGTAGCTCTTCTGGTTTTTGAGATATGCGTCTTTACATAAGCGCGGCGCCCGAAAAAACGGAGGGGCGCCTAGAGGCACCTTATTTTTAAAGGCGCATATCTCAAAAACCAAAAAAGCTACAAAAAAGTTATTACCTAATAAAATGTGTAAAAGTAAATTTGACACATTTTTCTAGTTAACCACTCTTTTGTAAATTTTTTGGTTTTTGTGTTATGCGCCTTTAAAAATAAGGTGCCTCTAGGCGCGGCACCCGTAAGAAGGCGGAGGGCACTAAAAGGCCCCTCGAATTTAAAGGCGCAGATCTCAAAAACCAAAAAAGCTACGAAGAAGTTGTCCACTAATGAAATGTGTAAAATTTTATGACAAATATTTTACCAGCTTACAAAATTATTGTATCTTCAAAGGCAACTGAGATAACCAGGCTTAAAGTAACGTCATCTAAATATTCTTTTTTTTTTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAATCCTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCATGTCATTGCTTTCCTTCGTTTTGTGTTCCTGGAGTATAAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTGGAGGCAAATTTTTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAACCGAGAGATTCAGAAA</canonical>
            <polymorphic>ATATATACTAAAAAAGAATAGAGCTTCATTTTTGTAATTGATAACTTTTTTGTAGCTCTTCTGGTTTTTGAGATATGCGTCTTTACATAAGCGCGGCGCCCGAAAAAACGGAGGGGCGCCTAGAGGCACCTTATTTTTAAAGGCGCATATCTCAAAAACCAAAAAAGCTACAAAAAAGTTATTACCTAATAAAATGTGTAAAAGTAAATTTGACACATTTTTCTAGTTAACCACTCTTTTGTAAATTTTTTGGTTTTTGTGTTATGCGCCTTTAAAAATAAGGTGCCTCTAGGCGCGGCACCCGTAAGAAGGCGGAGGGCACTAAAAGGCCCCTCGAATTTAAAGGCGCAGATCTCAAAAACCAAAAAAGCTACGAAGAAGTTGTCCACTAATGAAATGTGTAAAATTTTATGACAAATATTTTACCAGCTTACAAAATTATTGTATCTTCAAAGGCAACTGAGATAACCAGGCTTAAAGTAACGTCATCTAAATATTCYTTTTTTTTTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAATCCTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCATGTCATTGCTTTCCTTCGTTTTGTGTTCCTGGAGTATAAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTGGAGGCAAATTTTTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAACCGAGAGATTCAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGACCTAATTTTTCCACAA</pcr_primer_p1>
		<pcr_primer_p2>GAGAGATGACCTGGATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>634</pcr_amplicon_size>
		<canonical_amplicon>CTTTTTTTTTTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAATCCTCCCAAAATCCAGGTCATCTCTC</canonical_amplicon>
		<polymorphic_amplicon>CYTTTTTTTTTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAATCCTCCCAAAATCCAGGTCATCTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25014</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>29287</contig_pos>
        <strand>+</strand>
        <context>ATAATTTTCC[A/T]AAAAAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCC</left_flank>
        <right_flank>AAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTAACCACTCTTTTGTAAATTTTTTGGTTTTTGTGTTATGCGCCTTTAAAAATAAGGTGCCTCTAGGCGCGGCACCCGTAAGAAGGCGGAGGGCACTAAAAGGCCCCTCGAATTTAAAGGCGCAGATCTCAAAAACCAAAAAAGCTACGAAGAAGTTGTCCACTAATGAAATGTGTAAAATTTTATGACAAATATTTTACCAGCTTACAAAATTATTGTATCTTCAAAGGCAACTGAGATAACCAGGCTTAAAGTAACGTCATCTAAATATTCTTTTTTTTTTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAATCCTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCATGTCATTGCTTTCCTTCGTTTTGTGTTCCTGGAGTATAAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTGGAGGCAAATTTTTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAACCGAGAGATTCAGAAATTCGCGCCGCCTAGGACCCTCTTAGTTTCCTACACTCTCTCGCCGCTTCCCGAGAAGAAGAAGAAGAAGAAGCCGTTGAGAGGGGGGGGGGGGGCTTCTCCTTCTTCTTTTTCTTTTTCTTCTTTTCCGGAGACACCAATGTTTTATATACACATTCCACGACACATTTCACCACCACCACACATTTTCCACCCATCATTTTTATTCTTATTTTCCCTTTTTTT</canonical>
            <polymorphic>AGTTAACCACTCTTTTGTAAATTTTTTGGTTTTTGTGTTATGCGCCTTTAAAAATAAGGTGCCTCTAGGCGCGGCACCCGTAAGAAGGCGGAGGGCACTAAAAGGCCCCTCGAATTTAAAGGCGCAGATCTCAAAAACCAAAAAAGCTACGAAGAAGTTGTCCACTAATGAAATGTGTAAAATTTTATGACAAATATTTTACCAGCTTACAAAATTATTGTATCTTCAAAGGCAACTGAGATAACCAGGCTTAAAGTAACGTCATCTAAATATTCTTTTTTTTTTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAATCCTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCATGTCATTGCTTTCCTTCGTTTTGTGTTCCTGGAGTATAAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCCWAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTGGAGGCAAATTTTTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAACCGAGAGATTCAGAAATTCGCGCCGCCTAGGACCCTCTTAGTTTCCTACACTCTCTCGCCGCTTCCCGAGAAGAAGAAGAAGAAGAAGCCGTTGAGAGGGGGGGGGGGGGCTTCTCCTTCTTCTTTTTCTTTTTCTTCTTTTCCGGAGACACCAATGTTTTATATACACATTCCACGACACATTTCACCACCACCACACATTTTCCACCCATCATTTTTATTCTTATTTTCCCTTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTGTACAGATAGTACGGAAACT</pcr_primer_p1>
		<pcr_primer_p2>CAAGCAAAAATTTCAAGAGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTG</canonical_amplicon>
		<polymorphic_amplicon>AAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCCWAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25015</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>29448</contig_pos>
        <strand>+</strand>
        <context>TTTTGCTTGA[A/T]ATTTTTGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGA</left_flank>
        <right_flank>ATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCACTAATGAAATGTGTAAAATTTTATGACAAATATTTTACCAGCTTACAAAATTATTGTATCTTCAAAGGCAACTGAGATAACCAGGCTTAAAGTAACGTCATCTAAATATTCTTTTTTTTTTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAATCCTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCATGTCATTGCTTTCCTTCGTTTTGTGTTCCTGGAGTATAAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTGGAGGCAAATTTTTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAACCGAGAGATTCAGAAATTCGCGCCGCCTAGGACCCTCTTAGTTTCCTACACTCTCTCGCCGCTTCCCGAGAAGAAGAAGAAGAAGAAGCCGTTGAGAGGGGGGGGGGGGGCTTCTCCTTCTTCTTTTTCTTTTTCTTCTTTTCCGGAGACACCAATGTTTTATATACACATTCCACGACACATTTCACCACCACCACACATTTTCCACCCATCATTTTTATTCTTATTTTCCCTTTTTTTGTATTGCTCAAAATCTTTAATTGCAATTATCTCAATTCCTAGAATAGCTACCAAAAAGTAATTAATTATGAAAATTTATAACATTTCATTTTACATATTTTACTAGTTGATAACTTTTTTGTAACTTCCACGGTTTTTGAGATATGCGCCTTTAACCATGA</canonical>
            <polymorphic>CCACTAATGAAATGTGTAAAATTTTATGACAAATATTTTACCAGCTTACAAAATTATTGTATCTTCAAAGGCAACTGAGATAACCAGGCTTAAAGTAACGTCATCTAAATATTCTTTTTTTTTTGAACATTCCCTCTCCTAATCAAAAAAATCTAGAATCCTCCCAAAATCCAGGTCATCTCTCCCATAAGAAATCCACACCCATTCCATTTTCCACCTCATGTCATTGCTTTCCTTCGTTTTGTGTTCCTGGAGTATAAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAWATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTGGAGGCAAATTTTTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAACCGAGAGATTCAGAAATTCGCGCCGCCTAGGACCCTCTTAGTTTCCTACACTCTCTCGCCGCTTCCCGAGAAGAAGAAGAAGAAGAAGCCGTTGAGAGGGGGGGGGGGGGCTTCTCCTTCTTCTTTTTCTTTTTCTTCTTTTCCGGAGACACCAATGTTTTATATACACATTCCACGACACATTTCACCACCACCACACATTTTCCACCCATCATTTTTATTCTTATTTTCCCTTTTTTTGTATTGCTCAAAATCTTTAATTGCAATTATCTCAATTCCTAGAATAGCTACCAAAAAGTAATTAATTATGAAAATTTATAACATTTCATTTTACATATTTTACTAGTTGATAACTTTTTTGTAACTTCCACGGTTTTTGAGATATGCGCCTTTAACCATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>348 298 89 58 56 47 44 22 19 13 6</canonical_bands>
                <polymorphic_bands>348 298 89 71 56 47 44 22 19 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>263 244 89 56 40 37 34 32 26 24 22 20 19 18 16 13 13 9 9 6 6 4</canonical_bands>
                <polymorphic_bands>263 244 89 56 40 37 34 32 31 26 24 22 20 19 16 13 9 9 6 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACATTTTCCCAATTATTACACC</pcr_primer_p1>
		<pcr_primer_p2>CAGGGATTTTAGGCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTG</canonical_amplicon>
		<polymorphic_amplicon>TACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAWATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25016</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>29666</contig_pos>
        <strand></strand>
        <context>GGcttctcct[T/C]cttctttttc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGAAGAAGAAGAAGAAGAAGCCGTTGAGAGGGGGGGGGGGGGCTTCTCCT</left_flank>
        <right_flank>CTTCTTTTTCTTTTTCTTCTTTTCCGGAGACACCAATGTTTTATATACAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATGTCATTGCTTTCCTTCGTTTTGTGTTCCTGGAGTATAAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTGGAGGCAAATTTTTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAACCGAGAGATTCAGAAATTCGCGCCGCCTAGGACCCTCTTAGTTTCCTACACTCTCTCGCCGCTTCCCGAGAAGAAGAAGAAGAAGAAGCCGTTGAGAGGGGGGGGGGGGGCTTCTCCTTCTTCTTTTTCTTTTTCTTCTTTTCCGGAGACACCAATGTTTTATATACACATTCCACGACACATTTCACCACCACCACACATTTTCCACCCATCATTTTTATTCTTATTTTCCCTTTTTTTGTATTGCTCAAAATCTTTAATTGCAATTATCTCAATTCCTAGAATAGCTACCAAAAAGTAATTAATTATGAAAATTTATAACATTTCATTTTACATATTTTACTAGTTGATAACTTTTTTGTAACTTCCACGGTTTTTGAGATATGCGCCTTTAACCATGAGGTGCTCTCCCCCTCTTTTGCGCGCCCTGAGGTGCCCTATTTTTAAAGGCGCGTAGCTCAAAAACCAGAAAAGCTACAAAACAGTTATCAACTAGTAGAATGTGTAAAATTTGATTTTCTATGTTTTAACAGTTTGAATTTTAATTTTAAGTATTTTAGGGCCTGAGATAACTAGACTTAAAGCGGTGATATCTGAAATTTTGTTTTTTTAAACTTCA</canonical>
            <polymorphic>TCATGTCATTGCTTTCCTTCGTTTTGTGTTCCTGGAGTATAAACTGTACAGATAGTACGGAAACTATTTATTCAGAAACATGTAGTACATTTTCCCAATTATTACACCCCATAATTTTCCAAAAAAAAAAAAATCTAAAATCCGTGTCGAATTTCTAGGTCATTTGTATCCCGTTATATGTGAAATTGGCATGGGAAATTCGAATTTCCGGAAGTTTCCATAGAAAAATTATATATGTAAACATTAAATTTGTTTATTTTACTCTTGAAATTTTTGCTTGAAATTTTTGAAAAAAAAATAATTTTTTGAACAAAAAAATGCCTAAAATCCCTGGAGGCAAATTTTTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAACCGAGAGATTCAGAAATTCGCGCCGCCTAGGACCCTCTTAGTTTCCTACACTCTCTCGCCGCTTCCCGAGAAGAAGAAGAAGAAGAAGCCGTTGAGAGGGGGGGGGGGGGCTTCTCCTYCTTCTTTTTCTTTTTCTTCTTTTCCGGAGACACCAATGTTTTATATACACATTCCACGACACATTTCACCACCACCACACATTTTCCACCCATCATTTTTATTCTTATTTTCCCTTTTTTTGTATTGCTCAAAATCTTTAATTGCAATTATCTCAATTCCTAGAATAGCTACCAAAAAGTAATTAATTATGAAAATTTATAACATTTCATTTTACATATTTTACTAGTTGATAACTTTTTTGTAACTTCCACGGTTTTTGAGATATGCGCCTTTAACCATGAGGTGCTCTCCCCCTCTTTTGCGCGCCCTGAGGTGCCCTATTTTTAAAGGCGCGTAGCTCAAAAACCAGAAAAGCTACAAAACAGTTATCAACTAGTAGAATGTGTAAAATTTGATTTTCTATGTTTTAACAGTTTGAATTTTAATTTTAAGTATTTTAGGGCCTGAGATAACTAGACTTAAAGCGGTGATATCTGAAATTTTGTTTTTTTAAACTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGCCTCCTCAAAAACAAGT</pcr_primer_p1>
		<pcr_primer_p2>TAAAAATGATGGGTGGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAACCGAGAGATTCAGAAATTCGCGCCGCCTAGGACCCTCTTAGTTTCCTACACTCTCTCGCCGCTTCCCGAGAAGAAGAAGAAGAAGAAGCCGTTGAGAGGGGGGGGGGGGGCTTCTCCTTCTTCTTTTTCTTTTTCTTCTTTTCCGGAGACACCAATGTTTTATATACACATTCCACGACACATTTCACCACCACCACACATTTTCCACCCATCATTTTTA</canonical_amplicon>
		<polymorphic_amplicon>TTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAACCGAGAGATTCAGAAATTCGCGCCGCCTAGGACCCTCTTAGTTTCCTACACTCTCTCGCCGCTTCCCGAGAAGAAGAAGAAGAAGAAGCCGTTGAGAGGGGGGGGGGGGGCTTCTCCTYCTTCTTTTTCTTTTTCTTCTTTTCCGGAGACACCAATGTTTTATATACACATTCCACGACACATTTCACCACCACCACACATTTTCCACCCATCATTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25017</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>29969</contig_pos>
        <strand></strand>
        <context>ccctcttttg[C/A]gcgccctgag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GGTTTTTGAGATATGCGCCTTTAACCATGAGGTGCTCTCCCCCTCTTTTG</left_flank>
        <right_flank>GCGCCCTGAGGTGCCCTATTTTTAAAGGCGCGTAGCTCAAAAACCAGAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGAACAAAAAAATGCCTAAAATCCCTGGAGGCAAATTTTTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAACCGAGAGATTCAGAAATTCGCGCCGCCTAGGACCCTCTTAGTTTCCTACACTCTCTCGCCGCTTCCCGAGAAGAAGAAGAAGAAGAAGCCGTTGAGAGGGGGGGGGGGGGCTTCTCCTTCTTCTTTTTCTTTTTCTTCTTTTCCGGAGACACCAATGTTTTATATACACATTCCACGACACATTTCACCACCACCACACATTTTCCACCCATCATTTTTATTCTTATTTTCCCTTTTTTTGTATTGCTCAAAATCTTTAATTGCAATTATCTCAATTCCTAGAATAGCTACCAAAAAGTAATTAATTATGAAAATTTATAACATTTCATTTTACATATTTTACTAGTTGATAACTTTTTTGTAACTTCCACGGTTTTTGAGATATGCGCCTTTAACCATGAGGTGCTCTCCCCCTCTTTTGCGCGCCCTGAGGTGCCCTATTTTTAAAGGCGCGTAGCTCAAAAACCAGAAAAGCTACAAAACAGTTATCAACTAGTAGAATGTGTAAAATTTGATTTTCTATGTTTTAACAGTTTGAATTTTAATTTTAAGTATTTTAGGGCCTGAGATAACTAGACTTAAAGCGGTGATATCTGAAATTTTGTTTTTTTAAACTTCATCGTTGGTCAATTTTTTAAAAAGTTATATAGATCGATTGGAAATTTTCTGAAGACTGTTTTTCTTTTTTGAAAACCTCAAAAATTGTCATTTTAGGACGTTTTTACCCCGAAAAAGTGAGCTAAACTGACCCAGAGCGCGCTGAAAGCGCAATAGCCAAGGAAAGGGAGAGTGGCCACTTTGAGCTTGATTATCTCCATTTGTAGCAAAGATACAGAAAAGTTGTCAACTAACAAAATGTATATAATTAAATTTACAACATTTTTCGAATTTATTTTGTTATTGTCTATTTTTTAGAAACTGA</canonical>
            <polymorphic>TTTTGAACAAAAAAATGCCTAAAATCCCTGGAGGCAAATTTTTAGCCTCCTCAAAAACAAGTTGGTTTCTAAAGGAAACCGAGAGATTCAGAAATTCGCGCCGCCTAGGACCCTCTTAGTTTCCTACACTCTCTCGCCGCTTCCCGAGAAGAAGAAGAAGAAGAAGCCGTTGAGAGGGGGGGGGGGGGCTTCTCCTTCTTCTTTTTCTTTTTCTTCTTTTCCGGAGACACCAATGTTTTATATACACATTCCACGACACATTTCACCACCACCACACATTTTCCACCCATCATTTTTATTCTTATTTTCCCTTTTTTTGTATTGCTCAAAATCTTTAATTGCAATTATCTCAATTCCTAGAATAGCTACCAAAAAGTAATTAATTATGAAAATTTATAACATTTCATTTTACATATTTTACTAGTTGATAACTTTTTTGTAACTTCCACGGTTTTTGAGATATGCGCCTTTAACCATGAGGTGCTCTCCCCCTCTTTTGMGCGCCCTGAGGTGCCCTATTTTTAAAGGCGCGTAGCTCAAAAACCAGAAAAGCTACAAAACAGTTATCAACTAGTAGAATGTGTAAAATTTGATTTTCTATGTTTTAACAGTTTGAATTTTAATTTTAAGTATTTTAGGGCCTGAGATAACTAGACTTAAAGCGGTGATATCTGAAATTTTGTTTTTTTAAACTTCATCGTTGGTCAATTTTTTAAAAAGTTATATAGATCGATTGGAAATTTTCTGAAGACTGTTTTTCTTTTTTGAAAACCTCAAAAATTGTCATTTTAGGACGTTTTTACCCCGAAAAAGTGAGCTAAACTGACCCAGAGCGCGCTGAAAGCGCAATAGCCAAGGAAAGGGAGAGTGGCCACTTTGAGCTTGATTATCTCCATTTGTAGCAAAGATACAGAAAAGTTGTCAACTAACAAAATGTATATAATTAAATTTACAACATTTTTCGAATTTATTTTGTTATTGTCTATTTTTTAGAAACTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>403 305 165 98 29</canonical_bands>
                <polymorphic_bands>432 305 165 98</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>366 305 154 100 35 27 9 2 2</canonical_bands>
                <polymorphic_bands>366 305 154 100 37 27 9 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGCGC</site>
                <isoschizomers>
                    <enzyme>BsePI</enzyme>
                    <enzyme>BssHII</enzyme>
                    <enzyme>PauI</enzyme>
                </isoschizomers>
                <canonical_bands>499 334 167</canonical_bands>
                <polymorphic_bands>833 167</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 334 165</canonical_bands>
                <polymorphic_bands>835 165</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTTTTATTCTTATTTTCCCTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAGATATCACCGCTTTAAGTCTA</pcr_primer_p2>
		<pcr_amplicon_size>384</pcr_amplicon_size>
		<canonical_amplicon>CATTTTTATTCTTATTTTCCCTTTTTTTGTATTGCTCAAAATCTTTAATTGCAATTATCTCAATTCCTAGAATAGCTACCAAAAAGTAATTAATTATGAAAATTTATAACATTTCATTTTACATATTTTACTAGTTGATAACTTTTTTGTAACTTCCACGGTTTTTGAGATATGCGCCTTTAACCATGAGGTGCTCTCCCCCTCTTTTGCGCGCCCTGAGGTGCCCTATTTTTAAAGGCGCGTAGCTCAAAAACCAGAAAAGCTACAAAACAGTTATCAACTAGTAGAATGTGTAAAATTTGATTTTCTATGTTTTAACAGTTTGAATTTTAATTTTAAGTATTTTAGGGCCTGAGATAACTAGACTTAAAGCGGTGATATCTG</canonical_amplicon>
		<polymorphic_amplicon>CATTTTTATTCTTATTTTCCCTTTTTTTGTATTGCTCAAAATCTTTAATTGCAATTATCTCAATTCCTAGAATAGCTACCAAAAAGTAATTAATTATGAAAATTTATAACATTTCATTTTACATATTTTACTAGTTGATAACTTTTTTGTAACTTCCACGGTTTTTGAGATATGCGCCTTTAACCATGAGGTGCTCTCCCCCTCTTTTGMGCGCCCTGAGGTGCCCTATTTTTAAAGGCGCGTAGCTCAAAAACCAGAAAAGCTACAAAACAGTTATCAACTAGTAGAATGTGTAAAATTTGATTTTCTATGTTTTAACAGTTTGAATTTTAATTTTAAGTATTTTAGGGCCTGAGATAACTAGACTTAAAGCGGTGATATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25018</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>30444</contig_pos>
        <strand>+</strand>
        <context>AATTTATTTT[G/T]TTATTGTCTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTAACAAAATGTATATAATTAAATTTACAACATTTTTCGAATTTATTTT</left_flank>
        <right_flank>TTATTGTCTATTTTTTAGAAACTGAGATAACTATTGTAAAGCAAGGCGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAGGTGCTCTCCCCCTCTTTTGCGCGCCCTGAGGTGCCCTATTTTTAAAGGCGCGTAGCTCAAAAACCAGAAAAGCTACAAAACAGTTATCAACTAGTAGAATGTGTAAAATTTGATTTTCTATGTTTTAACAGTTTGAATTTTAATTTTAAGTATTTTAGGGCCTGAGATAACTAGACTTAAAGCGGTGATATCTGAAATTTTGTTTTTTTAAACTTCATCGTTGGTCAATTTTTTAAAAAGTTATATAGATCGATTGGAAATTTTCTGAAGACTGTTTTTCTTTTTTGAAAACCTCAAAAATTGTCATTTTAGGACGTTTTTACCCCGAAAAAGTGAGCTAAACTGACCCAGAGCGCGCTGAAAGCGCAATAGCCAAGGAAAGGGAGAGTGGCCACTTTGAGCTTGATTATCTCCATTTGTAGCAAAGATACAGAAAAGTTGTCAACTAACAAAATGTATATAATTAAATTTACAACATTTTTCGAATTTATTTTGTTATTGTCTATTTTTTAGAAACTGAGATAACTATTGTAAAGCAAGGCGACTTCAATTTCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATTGATTCGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAAT</canonical>
            <polymorphic>ATGAGGTGCTCTCCCCCTCTTTTGCGCGCCCTGAGGTGCCCTATTTTTAAAGGCGCGTAGCTCAAAAACCAGAAAAGCTACAAAACAGTTATCAACTAGTAGAATGTGTAAAATTTGATTTTCTATGTTTTAACAGTTTGAATTTTAATTTTAAGTATTTTAGGGCCTGAGATAACTAGACTTAAAGCGGTGATATCTGAAATTTTGTTTTTTTAAACTTCATCGTTGGTCAATTTTTTAAAAAGTTATATAGATCGATTGGAAATTTTCTGAAGACTGTTTTTCTTTTTTGAAAACCTCAAAAATTGTCATTTTAGGACGTTTTTACCCCGAAAAAGTGAGCTAAACTGACCCAGAGCGCGCTGAAAGCGCAATAGCCAAGGAAAGGGAGAGTGGCCACTTTGAGCTTGATTATCTCCATTTGTAGCAAAGATACAGAAAAGTTGTCAACTAACAAAATGTATATAATTAAATTTACAACATTTTTCGAATTTATTTTKTTATTGTCTATTTTTTAGAAACTGAGATAACTATTGTAAAGCAAGGCGACTTCAATTTCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATTGATTCGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTCATTTTAGGACGTTTTTAC</pcr_primer_p1>
		<pcr_primer_p2>AGTCGCCTTGCTTTACAATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTGTCATTTTAGGACGTTTTTACCCCGAAAAAGTGAGCTAAACTGACCCAGAGCGCGCTGAAAGCGCAATAGCCAAGGAAAGGGAGAGTGGCCACTTTGAGCTTGATTATCTCCATTTGTAGCAAAGATACAGAAAAGTTGTCAACTAACAAAATGTATATAATTAAATTTACAACATTTTTCGAATTTATTTTGTTATTGTCTATTTTTTAGAAACTGAGATAACTATTGTAAAGCAAGGCGACT</canonical_amplicon>
		<polymorphic_amplicon>TTGTCATTTTAGGACGTTTTTACCCCGAAAAAGTGAGCTAAACTGACCCAGAGCGCGCTGAAAGCGCAATAGCCAAGGAAAGGGAGAGTGGCCACTTTGAGCTTGATTATCTCCATTTGTAGCAAAGATACAGAAAAGTTGTCAACTAACAAAATGTATATAATTAAATTTACAACATTTTTCGAATTTATTTTKTTATTGTCTATTTTTTAGAAACTGAGATAACTATTGTAAAGCAAGGCGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25019</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>30701</contig_pos>
        <strand></strand>
        <context>aaaatagtta[G/A]aacaaagtag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTA</left_flank>
        <right_flank>AACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTT</right_flank>
        <qual_score>49</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGGAAATTTTCTGAAGACTGTTTTTCTTTTTTGAAAACCTCAAAAATTGTCATTTTAGGACGTTTTTACCCCGAAAAAGTGAGCTAAACTGACCCAGAGCGCGCTGAAAGCGCAATAGCCAAGGAAAGGGAGAGTGGCCACTTTGAGCTTGATTATCTCCATTTGTAGCAAAGATACAGAAAAGTTGTCAACTAACAAAATGTATATAATTAAATTTACAACATTTTTCGAATTTATTTTGTTATTGTCTATTTTTTAGAAACTGAGATAACTATTGTAAAGCAAGGCGACTTCAATTTCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATTGATTCGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGGGGAGAATAATTGTTATTTTAGGTCATTTTTAATGTTATGTTTCAGGCTAAAATTTTAGCATATGTGGCAAAAAGTTGAAAACCTGGTGTTCCCACAAAACTTTGTCTCTTTCTCCTTCTTCTATTCAACTTTTTTACATGCCTGACCGAGTTTTTGTGCTGCACA</canonical>
            <polymorphic>ATTGGAAATTTTCTGAAGACTGTTTTTCTTTTTTGAAAACCTCAAAAATTGTCATTTTAGGACGTTTTTACCCCGAAAAAGTGAGCTAAACTGACCCAGAGCGCGCTGAAAGCGCAATAGCCAAGGAAAGGGAGAGTGGCCACTTTGAGCTTGATTATCTCCATTTGTAGCAAAGATACAGAAAAGTTGTCAACTAACAAAATGTATATAATTAAATTTACAACATTTTTCGAATTTATTTTGTTATTGTCTATTTTTTAGAAACTGAGATAACTATTGTAAAGCAAGGCGACTTCAATTTCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATTGATTCGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTARAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGGGGAGAATAATTGTTATTTTAGGTCATTTTTAATGTTATGTTTCAGGCTAAAATTTTAGCATATGTGGCAAAAAGTTGAAAACCTGGTGTTCCCACAAAACTTTGTCTCTTTCTCCTTCTTCTATTCAACTTTTTTACATGCCTGACCGAGTTTTTGTGCTGCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATATAAGTTTTAAGGCCTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CCTAAAGGTTGGTGTCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>AAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGG</canonical_amplicon>
		<polymorphic_amplicon>AAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTARAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25020</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>30726</contig_pos>
        <strand></strand>
        <context>caagtaaaat[T/G]tataaaattt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAAT</left_flank>
        <right_flank>TATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTTTTTGAAAACCTCAAAAATTGTCATTTTAGGACGTTTTTACCCCGAAAAAGTGAGCTAAACTGACCCAGAGCGCGCTGAAAGCGCAATAGCCAAGGAAAGGGAGAGTGGCCACTTTGAGCTTGATTATCTCCATTTGTAGCAAAGATACAGAAAAGTTGTCAACTAACAAAATGTATATAATTAAATTTACAACATTTTTCGAATTTATTTTGTTATTGTCTATTTTTTAGAAACTGAGATAACTATTGTAAAGCAAGGCGACTTCAATTTCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATTGATTCGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGGGGAGAATAATTGTTATTTTAGGTCATTTTTAATGTTATGTTTCAGGCTAAAATTTTAGCATATGTGGCAAAAAGTTGAAAACCTGGTGTTCCCACAAAACTTTGTCTCTTTCTCCTTCTTCTATTCAACTTTTTTACATGCCTGACCGAGTTTTTGTGCTGCACATCGTCATAAAAGTTCATTCTATACA</canonical>
            <polymorphic>TTCTTTTTTGAAAACCTCAAAAATTGTCATTTTAGGACGTTTTTACCCCGAAAAAGTGAGCTAAACTGACCCAGAGCGCGCTGAAAGCGCAATAGCCAAGGAAAGGGAGAGTGGCCACTTTGAGCTTGATTATCTCCATTTGTAGCAAAGATACAGAAAAGTTGTCAACTAACAAAATGTATATAATTAAATTTACAACATTTTTCGAATTTATTTTGTTATTGTCTATTTTTTAGAAACTGAGATAACTATTGTAAAGCAAGGCGACTTCAATTTCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATTGATTCGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATKTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGGGGAGAATAATTGTTATTTTAGGTCATTTTTAATGTTATGTTTCAGGCTAAAATTTTAGCATATGTGGCAAAAAGTTGAAAACCTGGTGTTCCCACAAAACTTTGTCTCTTTCTCCTTCTTCTATTCAACTTTTTTACATGCCTGACCGAGTTTTTGTGCTGCACATCGTCATAAAAGTTCATTCTATACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>289 198 189 157 140 18 9</canonical_bands>
                <polymorphic_bands>298 198 189 157 140 18</polymorphic_bands>
            </assay>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>193 163 142 140 64 52 43 39 32 32 21 21 18 12 9 9 5 5</canonical_bands>
                <polymorphic_bands>193 163 142 140 64 52 48 43 32 32 21 21 18 12 9 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATATAAGTTTTAAGGCCTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CCTAAAGGTTGGTGTCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>AAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGG</canonical_amplicon>
		<polymorphic_amplicon>AAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATKTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25021</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>30745</contig_pos>
        <strand></strand>
        <context>ttaattttac[G/A]cattyyacta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTAC</left_flank>
        <right_flank>CATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATAT</right_flank>
        <qual_score>47</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTGTCATTTTAGGACGTTTTTACCCCGAAAAAGTGAGCTAAACTGACCCAGAGCGCGCTGAAAGCGCAATAGCCAAGGAAAGGGAGAGTGGCCACTTTGAGCTTGATTATCTCCATTTGTAGCAAAGATACAGAAAAGTTGTCAACTAACAAAATGTATATAATTAAATTTACAACATTTTTCGAATTTATTTTGTTATTGTCTATTTTTTAGAAACTGAGATAACTATTGTAAAGCAAGGCGACTTCAATTTCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATTGATTCGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGGGGAGAATAATTGTTATTTTAGGTCATTTTTAATGTTATGTTTCAGGCTAAAATTTTAGCATATGTGGCAAAAAGTTGAAAACCTGGTGTTCCCACAAAACTTTGTCTCTTTCTCCTTCTTCTATTCAACTTTTTTACATGCCTGACCGAGTTTTTGTGCTGCACATCGTCATAAAAGTTCATTCTATACAGACGAAGAGACGACACGCT</canonical>
            <polymorphic>AAAATTGTCATTTTAGGACGTTTTTACCCCGAAAAAGTGAGCTAAACTGACCCAGAGCGCGCTGAAAGCGCAATAGCCAAGGAAAGGGAGAGTGGCCACTTTGAGCTTGATTATCTCCATTTGTAGCAAAGATACAGAAAAGTTGTCAACTAACAAAATGTATATAATTAAATTTACAACATTTTTCGAATTTATTTTGTTATTGTCTATTTTTTAGAAACTGAGATAACTATTGTAAAGCAAGGCGACTTCAATTTCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATTGATTCGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACRCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGGGGAGAATAATTGTTATTTTAGGTCATTTTTAATGTTATGTTTCAGGCTAAAATTTTAGCATATGTGGCAAAAAGTTGAAAACCTGGTGTTCCCACAAAACTTTGTCTCTTTCTCCTTCTTCTATTCAACTTTTTTACATGCCTGACCGAGTTTTTGTGCTGCACATCGTCATAAAAGTTCATTCTATACAGACGAAGAGACGACACGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATATAAGTTTTAAGGCCTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CCTAAAGGTTGGTGTCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>AAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGG</canonical_amplicon>
		<polymorphic_amplicon>AAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACRCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25022</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>30750</contig_pos>
        <strand></strand>
        <context>tttacrcatt[T/C]yactagttga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATT</left_flank>
        <right_flank>TACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCC</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCATTTTAGGACGTTTTTACCCCGAAAAAGTGAGCTAAACTGACCCAGAGCGCGCTGAAAGCGCAATAGCCAAGGAAAGGGAGAGTGGCCACTTTGAGCTTGATTATCTCCATTTGTAGCAAAGATACAGAAAAGTTGTCAACTAACAAAATGTATATAATTAAATTTACAACATTTTTCGAATTTATTTTGTTATTGTCTATTTTTTAGAAACTGAGATAACTATTGTAAAGCAAGGCGACTTCAATTTCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATTGATTCGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGGGGAGAATAATTGTTATTTTAGGTCATTTTTAATGTTATGTTTCAGGCTAAAATTTTAGCATATGTGGCAAAAAGTTGAAAACCTGGTGTTCCCACAAAACTTTGTCTCTTTCTCCTTCTTCTATTCAACTTTTTTACATGCCTGACCGAGTTTTTGTGCTGCACATCGTCATAAAAGTTCATTCTATACAGACGAAGAGACGACACGCTTGAAT</canonical>
            <polymorphic>TGTCATTTTAGGACGTTTTTACCCCGAAAAAGTGAGCTAAACTGACCCAGAGCGCGCTGAAAGCGCAATAGCCAAGGAAAGGGAGAGTGGCCACTTTGAGCTTGATTATCTCCATTTGTAGCAAAGATACAGAAAAGTTGTCAACTAACAAAATGTATATAATTAAATTTACAACATTTTTCGAATTTATTTTGTTATTGTCTATTTTTTAGAAACTGAGATAACTATTGTAAAGCAAGGCGACTTCAATTTCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATTGATTCGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTYTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGGGGAGAATAATTGTTATTTTAGGTCATTTTTAATGTTATGTTTCAGGCTAAAATTTTAGCATATGTGGCAAAAAGTTGAAAACCTGGTGTTCCCACAAAACTTTGTCTCTTTCTCCTTCTTCTATTCAACTTTTTTACATGCCTGACCGAGTTTTTGTGCTGCACATCGTCATAAAAGTTCATTCTATACAGACGAAGAGACGACACGCTTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATATAAGTTTTAAGGCCTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CCTAAAGGTTGGTGTCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>AAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGG</canonical_amplicon>
		<polymorphic_amplicon>AAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTYTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25023</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>30751</contig_pos>
        <strand></strand>
        <context>ttacrcatty[T/C]actagttgat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTT</left_flank>
        <right_flank>ACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCATTTTAGGACGTTTTTACCCCGAAAAAGTGAGCTAAACTGACCCAGAGCGCGCTGAAAGCGCAATAGCCAAGGAAAGGGAGAGTGGCCACTTTGAGCTTGATTATCTCCATTTGTAGCAAAGATACAGAAAAGTTGTCAACTAACAAAATGTATATAATTAAATTTACAACATTTTTCGAATTTATTTTGTTATTGTCTATTTTTTAGAAACTGAGATAACTATTGTAAAGCAAGGCGACTTCAATTTCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATTGATTCGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGGGGAGAATAATTGTTATTTTAGGTCATTTTTAATGTTATGTTTCAGGCTAAAATTTTAGCATATGTGGCAAAAAGTTGAAAACCTGGTGTTCCCACAAAACTTTGTCTCTTTCTCCTTCTTCTATTCAACTTTTTTACATGCCTGACCGAGTTTTTGTGCTGCACATCGTCATAAAAGTTCATTCTATACAGACGAAGAGACGACACGCTTGAATG</canonical>
            <polymorphic>GTCATTTTAGGACGTTTTTACCCCGAAAAAGTGAGCTAAACTGACCCAGAGCGCGCTGAAAGCGCAATAGCCAAGGAAAGGGAGAGTGGCCACTTTGAGCTTGATTATCTCCATTTGTAGCAAAGATACAGAAAAGTTGTCAACTAACAAAATGTATATAATTAAATTTACAACATTTTTCGAATTTATTTTGTTATTGTCTATTTTTTAGAAACTGAGATAACTATTGTAAAGCAAGGCGACTTCAATTTCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATTGATTCGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTYACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGGGGAGAATAATTGTTATTTTAGGTCATTTTTAATGTTATGTTTCAGGCTAAAATTTTAGCATATGTGGCAAAAAGTTGAAAACCTGGTGTTCCCACAAAACTTTGTCTCTTTCTCCTTCTTCTATTCAACTTTTTTACATGCCTGACCGAGTTTTTGTGCTGCACATCGTCATAAAAGTTCATTCTATACAGACGAAGAGACGACACGCTTGAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATATAAGTTTTAAGGCCTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CCTAAAGGTTGGTGTCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>AAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGG</canonical_amplicon>
		<polymorphic_amplicon>AAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTYACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25024</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>30982</contig_pos>
        <strand>+</strand>
        <context>TCTTYAATGG[G/T]AATTGAGATA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGG</left_flank>
        <right_flank>AATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCAAGGCGACTTCAATTTCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATTGATTCGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGGGGAGAATAATTGTTATTTTAGGTCATTTTTAATGTTATGTTTCAGGCTAAAATTTTAGCATATGTGGCAAAAAGTTGAAAACCTGGTGTTCCCACAAAACTTTGTCTCTTTCTCCTTCTTCTATTCAACTTTTTTACATGCCTGACCGAGTTTTTGTGCTGCACATCGTCATAAAAGTTCATTCTATACAGACGAAGAGACGACACGCTTGAATGTTTAACGCTCTTTTTCATGTCGTCCGTTCTGTCGCTTTTCATCATCATTACCCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCATTCAATTTAATCTTTAATTTATATGTGTTTCTGTTGTTCTCCCTAGTACTACTAGTGCAACTACTATAGTTAATAGCGGGAACATTTCCCGT</canonical>
            <polymorphic>AAGCAAGGCGACTTCAATTTCCATTTTTGGCAACTTTACGCTAGACTAATTGGTCCGAAAATTATATAGATTGATTCGAAATATTTTGGAGCCTATTTTTCTTCTTTGGAATATTTAAAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGKAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGGGGAGAATAATTGTTATTTTAGGTCATTTTTAATGTTATGTTTCAGGCTAAAATTTTAGCATATGTGGCAAAAAGTTGAAAACCTGGTGTTCCCACAAAACTTTGTCTCTTTCTCCTTCTTCTATTCAACTTTTTTACATGCCTGACCGAGTTTTTGTGCTGCACATCGTCATAAAAGTTCATTCTATACAGACGAAGAGACGACACGCTTGAATGTTTAACGCTCTTTTTCATGTCGTCCGTTCTGTCGCTTTTCATCATCATTACCCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCATTCAATTTAATCTTTAATTTATATGTGTTTCTGTTGTTCTCCCTAGTACTACTAGTGCAACTACTATAGTTAATAGCGGGAACATTTCCCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATATAAGTTTTAAGGCCTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CCTAAAGGTTGGTGTCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>AAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGTAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGG</canonical_amplicon>
		<polymorphic_amplicon>AAAATATAAGTTTTAAGGCCTTTTCACCCCAAAAATGCGACAGCCAAAGAAAGGGAGAGTGCTCACTTTGAGCTTAGTTATCTCAATTCCTAAAATAGTTAGAACAAAGTAGTCAACAAGTAAAATTTATAAAATTTAATTTTACGCATTTTACTAGTTGATAACTTTTTTGTAACTTTTACGGTGTTTGAGATATGCGCCTTTAAAAATAGAGTACCTCTAGGCGTGGCGCAGAGGCGAGAAGGCGCTTCGAGTCCACCTATTTTTAAAGGCGCATAACTCAAAAACCAGAAAAAATACAAAAAAGTTGTCAACTAGTGAAATGTGTAGAATTTCATGGGAAATATCTTATTGGTTTTTAAAATTACTGTATCTTTAATGGKAATTGAGATAATTAGAGCTAAAGAAAAGCAACTTTTTTGACACCAACCTTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25025</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>32263</contig_pos>
        <strand></strand>
        <context>Gtcaacttgg[T/A]gcccatatat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CTTAGAGCTACCGTATACCCTGATCCCCTTCCCGAACCGTGTCAACTTGG</left_flank>
        <right_flank>GCCCATATATCTCATTTCCCGTAGAAGATATAAAAAAGTGGTGCATTGAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAACAATTTATCAGTTGACCACTTCTTGATACCTTTTATAGAAAGAGAGATAAATTAACTCAAAGTTGAGAGGCTGCCTAGCCGACAGCGTAGCTCTGTTGCAAGTGCCGACTTGTTAACTTTGAGCCAATTTATCTCATTTCCTGTGAAAGATATCAAAAAGTAATCAACTAACAAAATGTTTATTACAAAAGTATAAATATTTTATCTGTTGACCACTTTTTGATATCTTTCACAGGAAATGAGATGTTTGGGCTAAATGTTGACGGTTGACTAGTACTAAAGTAACTTCATCGGAATCTCCTTTTTGAAATTGTTTATCGTACTCAACATTTTTGAAAGTCACATAGATTGATTTATAAACAAATGTTGATTATATCTGAACCAAATTCAAGTCTAGTCAAGGCTTTCCAGCTTCAAACTTCAACCTCGAGCTAAACAAGAAAGCTTAGAGCTACCGTATACCCTGATCCCCTTCCCGAACCGTGTCAACTTGGTGCCCATATATCTCATTTCCCGTAGAAGATATAAAAAAGTGGTGCATTGATAAAATATTGTTGAATTTATGATAAACATTTTATCAGTTGACAAAATTTTGAGATCTTTCCTAGGATATGAGATAAATTGGCTCCAAACAGTGAGAAAGGTAGCTAGCTCAGCCAGCAAGCGCCGACTGGTCAACTTTGAACTCATTTATTTTATTTCCTGCAAAAGATATCAAAAAGTGGTCAACTGATAAAATATTGCTGAATTTATGAAAAACATTTTGTTAGTTGACAAAATTTTGATATCTTCTACAGGAAACGAGATATAAGAGCTCAAAGTTGAAAAATCGGTGGTAACTATGTTACAGTATTTACTAGGACACTTCTCGATGTTTTTTGTGCGTCTAGTTTTAAAAAAAAGCAGTATTTAATAGGCTAGGCTCCCCCATAACAACCATATTAACCCCACCCCGCAAAAGTGCCAGCAGATATATCATCAACAATTCCCCCCTC</canonical>
            <polymorphic>ATAAACAATTTATCAGTTGACCACTTCTTGATACCTTTTATAGAAAGAGAGATAAATTAACTCAAAGTTGAGAGGCTGCCTAGCCGACAGCGTAGCTCTGTTGCAAGTGCCGACTTGTTAACTTTGAGCCAATTTATCTCATTTCCTGTGAAAGATATCAAAAAGTAATCAACTAACAAAATGTTTATTACAAAAGTATAAATATTTTATCTGTTGACCACTTTTTGATATCTTTCACAGGAAATGAGATGTTTGGGCTAAATGTTGACGGTTGACTAGTACTAAAGTAACTTCATCGGAATCTCCTTTTTGAAATTGTTTATCGTACTCAACATTTTTGAAAGTCACATAGATTGATTTATAAACAAATGTTGATTATATCTGAACCAAATTCAAGTCTAGTCAAGGCTTTCCAGCTTCAAACTTCAACCTCGAGCTAAACAAGAAAGCTTAGAGCTACCGTATACCCTGATCCCCTTCCCGAACCGTGTCAACTTGGWGCCCATATATCTCATTTCCCGTAGAAGATATAAAAAAGTGGTGCATTGATAAAATATTGTTGAATTTATGATAAACATTTTATCAGTTGACAAAATTTTGAGATCTTTCCTAGGATATGAGATAAATTGGCTCCAAACAGTGAGAAAGGTAGCTAGCTCAGCCAGCAAGCGCCGACTGGTCAACTTTGAACTCATTTATTTTATTTCCTGCAAAAGATATCAAAAAGTGGTCAACTGATAAAATATTGCTGAATTTATGAAAAACATTTTGTTAGTTGACAAAATTTTGATATCTTCTACAGGAAACGAGATATAAGAGCTCAAAGTTGAAAAATCGGTGGTAACTATGTTACAGTATTTACTAGGACACTTCTCGATGTTTTTTGTGCGTCTAGTTTTAAAAAAAAGCAGTATTTAATAGGCTAGGCTCCCCCATAACAACCATATTAACCCCACCCCGCAAAAGTGCCAGCAGATATATCATCAACAATTCCCCCCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>503 318 179</canonical_bands>
                <polymorphic_bands>821 179</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>143 111 110 99 87 86 70 67 41 39 32 29 23 19 17 13 11 3</canonical_bands>
                <polymorphic_bands>143 111 110 99 87 86 70 67 50 41 32 29 23 19 17 13 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAAAGCTTAGAGCTACCGTAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAACATCGAGAAGTGTCCTA</pcr_primer_p2>
		<pcr_amplicon_size>442</pcr_amplicon_size>
		<canonical_amplicon>AAGAAAGCTTAGAGCTACCGTATACCCTGATCCCCTTCCCGAACCGTGTCAACTTGGTGCCCATATATCTCATTTCCCGTAGAAGATATAAAAAAGTGGTGCATTGATAAAATATTGTTGAATTTATGATAAACATTTTATCAGTTGACAAAATTTTGAGATCTTTCCTAGGATATGAGATAAATTGGCTCCAAACAGTGAGAAAGGTAGCTAGCTCAGCCAGCAAGCGCCGACTGGTCAACTTTGAACTCATTTATTTTATTTCCTGCAAAAGATATCAAAAAGTGGTCAACTGATAAAATATTGCTGAATTTATGAAAAACATTTTGTTAGTTGACAAAATTTTGATATCTTCTACAGGAAACGAGATATAAGAGCTCAAAGTTGAAAAATCGGTGGTAACTATGTTACAGTATTTACTAGGACACTTCTCGATGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAGAAAGCTTAGAGCTACCGTATACCCTGATCCCCTTCCCGAACCGTGTCAACTTGGWGCCCATATATCTCATTTCCCGTAGAAGATATAAAAAAGTGGTGCATTGATAAAATATTGTTGAATTTATGATAAACATTTTATCAGTTGACAAAATTTTGAGATCTTTCCTAGGATATGAGATAAATTGGCTCCAAACAGTGAGAAAGGTAGCTAGCTCAGCCAGCAAGCGCCGACTGGTCAACTTTGAACTCATTTATTTTATTTCCTGCAAAAGATATCAAAAAGTGGTCAACTGATAAAATATTGCTGAATTTATGAAAAACATTTTGTTAGTTGACAAAATTTTGATATCTTCTACAGGAAACGAGATATAAGAGCTCAAAGTTGAAAAATCGGTGGTAACTATGTTACAGTATTTACTAGGACACTTCTCGATGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25026</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>33671</contig_pos>
        <strand>+</strand>
        <context>GAATTGTGAA[A/T]TTTTTTTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAA</left_flank>
        <right_flank>TTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAGAAAAAAACATCCGATTCTTACAAAAATATGTCTCTACCTGTCTGTGTGACTCATTGAAAAAGTTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGACGCAGAGAAAATAAGAGGGAAAATAATAGAAAGTGTCATCTGTGTTGTTTGCTCGAAAACTTTTTAATTTCACCACTTATTTTCTGACTAGGTGACGTTTTTTTAATTCCGGAAATTCTAGAAATGCTGAAAATGCGCTCTACCAAACTTTTACGATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTT</canonical>
            <polymorphic>GAAAGAAAAAAACATCCGATTCTTACAAAAATATGTCTCTACCTGTCTGTGTGACTCATTGAAAAAGTTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGACGCAGAGAAAATAAGAGGGAAAATAATAGAAAGTGTCATCTGTGTTGTTTGCTCGAAAACTTTTTAATTTCACCACTTATTTTCTGACTAGGTGACGTTTTTTTAATTCCGGAAATTCTAGAAATGCTGAAAATGCGCTCTACCAAACTTTTACGATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAAWTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>256 166 119 117 104 77 60 17 13 13 13 12 10 8 8 7</canonical_bands>
                <polymorphic_bands>256 166 119 117 117 77 60 17 13 13 12 10 8 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>208 97 77 69 67 55 46 44 39 37 33 29 26 25 17 13 13 13 12 10 9 9 8 8 7 7 7 6 5 4</canonical_bands>
                <polymorphic_bands>208 97 77 69 67 55 46 44 39 37 33 29 26 25 20 17 13 13 12 10 9 9 8 8 7 7 6 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACATTTGGTGTCAAACACA</pcr_primer_p1>
		<pcr_primer_p2>AACAATTGATACAGAAAGTGGATA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTT</canonical_amplicon>
		<polymorphic_amplicon>AACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAAWTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25027</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>33726</contig_pos>
        <strand>+</strand>
        <context>TGAAAAAATT[C/G]TTTTTTWCGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATT</left_flank>
        <right_flank>TTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATTGAAAAAGTTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGACGCAGAGAAAATAAGAGGGAAAATAATAGAAAGTGTCATCTGTGTTGTTTGCTCGAAAACTTTTTAATTTCACCACTTATTTTCTGACTAGGTGACGTTTTTTTAATTCCGGAAATTCTAGAAATGCTGAAAATGCGCTCTACCAAACTTTTACGATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCG</canonical>
            <polymorphic>TCATTGAAAAAGTTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGACGCAGAGAAAATAAGAGGGAAAATAATAGAAAGTGTCATCTGTGTTGTTTGCTCGAAAACTTTTTAATTTCACCACTTATTTTCTGACTAGGTGACGTTTTTTTAATTCCGGAAATTCTAGAAATGCTGAAAATGCGCTCTACCAAACTTTTACGATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTSTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>201 166 119 117 104 77 60 39 29 17 13 13 12 10 8 8 7</canonical_bands>
                <polymorphic_bands>201 166 119 117 104 77 60 39 30 29 13 12 10 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGTCAAACACAAGAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>GAGCAACAATTGATACAGAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTC</canonical_amplicon>
		<polymorphic_amplicon>GGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTSTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25028</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>33733</contig_pos>
        <strand>+</strand>
        <context>ATTSTTTTTT[A/T]CGCAAAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTT</left_flank>
        <right_flank>CGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGTTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGACGCAGAGAAAATAAGAGGGAAAATAATAGAAAGTGTCATCTGTGTTGTTTGCTCGAAAACTTTTTAATTTCACCACTTATTTTCTGACTAGGTGACGTTTTTTTAATTCCGGAAATTCTAGAAATGCTGAAAATGCGCTCTACCAAACTTTTACGATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATT</canonical>
            <polymorphic>AAAAGTTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGACGCAGAGAAAATAAGAGGGAAAATAATAGAAAGTGTCATCTGTGTTGTTTGCTCGAAAACTTTTTAATTTCACCACTTATTTTCTGACTAGGTGACGTTTTTTTAATTCCGGAAATTCTAGAAATGCTGAAAATGCGCTCTACCAAACTTTTACGATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTWCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGTCAAACACAAGAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>GAGCAACAATTGATACAGAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTC</canonical_amplicon>
		<polymorphic_amplicon>GGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTWCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25029</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>33776</contig_pos>
        <strand>+</strand>
        <context>AGAATTGCTG[C/T]GAGRCCCATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTG</left_flank>
        <right_flank>GAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGACGCAGAGAAAATAAGAGGGAAAATAATAGAAAGTGTCATCTGTGTTGTTTGCTCGAAAACTTTTTAATTTCACCACTTATTTTCTGACTAGGTGACGTTTTTTTAATTCCGGAAATTCTAGAAATGCTGAAAATGCGCTCTACCAAACTTTTACGATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGG</canonical>
            <polymorphic>GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGACGCAGAGAAAATAAGAGGGAAAATAATAGAAAGTGTCATCTGTGTTGTTTGCTCGAAAACTTTTTAATTTCACCACTTATTTTCTGACTAGGTGACGTTTTTTTAATTCCGGAAATTCTAGAAATGCTGAAAATGCGCTCTACCAAACTTTTACGATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGYGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>499 232 186 83</canonical_bands>
                <polymorphic_bands>731 186 83</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>496 272 232</canonical_bands>
                <polymorphic_bands>728 272</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGTCAAACACAAGAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>GAGCAACAATTGATACAGAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTC</canonical_amplicon>
		<polymorphic_amplicon>GGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGYGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25030</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>33846</contig_pos>
        <strand>+</strand>
        <context>ATTATTTTTG[A/T]YTGATATCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTG</left_flank>
        <right_flank>CTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTCATCTGTGTTGTTTGCTCGAAAACTTTTTAATTTCACCACTTATTTTCTGACTAGGTGACGTTTTTTTAATTCCGGAAATTCTAGAAATGCTGAAAATGCGCTCTACCAAACTTTTACGATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTAAGACCTAGAAA</canonical>
            <polymorphic>GTGTCATCTGTGTTGTTTGCTCGAAAACTTTTTAATTTCACCACTTATTTTCTGACTAGGTGACGTTTTTTTAATTCCGGAAATTCTAGAAATGCTGAAAATGCGCTCTACCAAACTTTTACGATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGWCTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTAAGACCTAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATTTCGATTAAAAATAGTGA</pcr_primer_p1>
		<pcr_primer_p2>CGATTTTATTCTTTTGTTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>CAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCG</canonical_amplicon>
		<polymorphic_amplicon>CAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGWCTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25031</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>33881</contig_pos>
        <strand>+</strand>
        <context>TGTTGCTCAG[C/T]AAAAAAACAT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAG</left_flank>
        <right_flank>AAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCACCACTTATTTTCTGACTAGGTGACGTTTTTTTAATTCCGGAAATTCTAGAAATGCTGAAAATGCGCTCTACCAAACTTTTACGATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTAAGACCTAGAAACCCAAAATTTTGAATTTGATGGCCTAGAAAACCAA</canonical>
            <polymorphic>TTTCACCACTTATTTTCTGACTAGGTGACGTTTTTTTAATTCCGGAAATTCTAGAAATGCTGAAAATGCGCTCTACCAAACTTTTACGATATCCGGCGGGAAATTGAATTTTTAGATTTTTTTTTTCGCTATTTTCTTATGATTTAGGCTTTTTTGAATGTTTTTTCTCAACTTTCCACTTCAAATTCTTCAAAAAAACAGTTTTTTTCCAGAATCCTTCACTCGAACCCCATTCCGACGAACATTTGGTGTCAAACACAAGAAGAAGAGGGACGACGGGAATTGTGAATTTTTTTTTTAAATTTTCAAATTCTGAATTTGTCTGAAAATTTGCTGAAAAAATTTTTTTTTTCGCAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGYAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCGCTGCGAAACCCATCAAGAATTTTCTAAGCATGCGCCTTTAAAGGACTACGGTATTTATTGAAATTAATTTTTTTCCCTCATTTCTGGGTCAATTTTTGGCTTTAAAAAGCCAAAGAAGGCCGTTTTTCTCCTTAAAAATTCTCCAAAATTCAAAAATTCACTATTTTCAGCCACCCTCAACGTCCGCCGCTCAAATTCCACGTCTTCTAGCATCCGGAGTCGTCGAATTTCATCGGCCATCGTTAGCAGAGAAATGATTGTGGGTCCAGCGGCGATGCCGCCGAAACCGCCACAAGAACAGCTGGATAAGATGTTCGATGATGTTCTGGTAAGACCTAGAAACCCAAAATTTTGAATTTGATGGCCTAGAAAACCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>502 218 174 78 18 10</canonical_bands>
                <polymorphic_bands>676 218 78 18 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAATTTCGATTAAAAATAGTGA</pcr_primer_p1>
		<pcr_primer_p2>CGATTTTATTCTTTTGTTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>CAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGAAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCG</canonical_amplicon>
		<polymorphic_amplicon>CAAAATTTCGATTAAAAATAGTGAATAAAGAGAATTGCTGCGAGACCCATCAAACAAGTTTTAAACATGCGCCTTTCAAAGACTACGGTGTTTTAAAATAATTATTTTTGACTGATATCCACTTTCTGTATCAATTGTTGCTCAGYAAAAAAACATTTTTTATGAAAAAAATTCAAGAAATTAAAAATTACAATTGAAAACTTTAAGTTTGCTAAAAAATTGCTAAAAAACGGCATTTTTCGCTTAAAAACAACAAAAGAATAAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25032</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>40018</contig_pos>
        <strand>+</strand>
        <context>ATTGAAAGGG[C/T]CCCTCTAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCTAGTTGAAGAGTCCCCTCTAATTAAAGAGCCCTCTCTATTGAAAGGG</left_flank>
        <right_flank>CCCTCTAATAGAAGGCTCCCCTCTAATTGAAAAGCCCCCTCTGTAGTTGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGAAATCGAACGGCTGGAGCATAAGCTATCAGTGATGAGAATAATGTCGGAATTCGATGAATCCGCGGCTCTCCTGGAACCCCAATTGACACATGTAACAGCTGCATCGAAGTGTGCACGAGAAGCGGAGACGTTCCACGGTGTTCTAGAAGTAATCCTGGCTTTCGGAAACTATATGAATAGTGGAAAAAGGGGCGGAGCCTATGGATTCAAGCTATCGTCGCTGGATTCGCTAGCGATTCTCAAGTCGCAAACTGATAAGAGTTTGACACTGTTGCATATGATTGTGGCGGAGATTGAGACACATTTGTCGCATTTGAAGGTGAGAATTTTGAATTTTTTGTATTAGAAGGGTCCCTTTAATAGAAGGGCCTCTCTAATAGAAGGTCACTCTGAGAGGAGATTGGGAAAGTGACGCCCCCCCCCCCCCCCTAATTGAAGACCCCCCTCTAGTTGAAGAGTCCCCTCTAATTAAAGAGCCCTCTCTATTGAAAGGGCCCCTCTAATAGAAGGCTCCCCTCTAATTGAAAAGCCCCCTCTGTAGTTGAAGCCCTCCCCAGGTTTTACGGTATTTTCAATTTTCCAGACATTTGCTGATCAACTGAAATTCGTTGAGAAAGCCACCCATGTCCAATGGGACTCCATCTCCTCGGACATGAAAGATTTGGAACAAGGATTCAAAATGGCTGAAAAAGAGCAATCGCTGAAAGGAGCCGACTGCCCTGAAACCCTCCAAGAATTCCTAGAAACTCGGAAACAAAAAATGACGGATCTTGAGCAATCCTTCCAATTGGCCAAATCATCGTTCAAGGATTGCTGCGAATTCTACGGGGAGAACGAAAAAACCACTCCTCCCAACATCTTCTTCCAGAAGTTGGCTCACTTCGTCGCCAATTATAATAAGTGTCGACAGGAGAATGAGGCGAAGGCCGCTGCTGAGAAGGTAGGAAATGCTGAAAATTGTCTAGAAAGTGCTGAAAAATGACATAAAATATGAT</canonical>
            <polymorphic>TGTGAAATCGAACGGCTGGAGCATAAGCTATCAGTGATGAGAATAATGTCGGAATTCGATGAATCCGCGGCTCTCCTGGAACCCCAATTGACACATGTAACAGCTGCATCGAAGTGTGCACGAGAAGCGGAGACGTTCCACGGTGTTCTAGAAGTAATCCTGGCTTTCGGAAACTATATGAATAGTGGAAAAAGGGGCGGAGCCTATGGATTCAAGCTATCGTCGCTGGATTCGCTAGCGATTCTCAAGTCGCAAACTGATAAGAGTTTGACACTGTTGCATATGATTGTGGCGGAGATTGAGACACATTTGTCGCATTTGAAGGTGAGAATTTTGAATTTTTTGTATTAGAAGGGTCCCTTTAATAGAAGGGCCTCTCTAATAGAAGGTCACTCTGAGAGGAGATTGGGAAAGTGACGCCCCCCCCCCCCCCCTAATTGAAGACCCCCCTCTAGTTGAAGAGTCCCCTCTAATTAAAGAGCCCTCTCTATTGAAAGGGYCCCTCTAATAGAAGGCTCCCCTCTAATTGAAAAGCCCCCTCTGTAGTTGAAGCCCTCCCCAGGTTTTACGGTATTTTCAATTTTCCAGACATTTGCTGATCAACTGAAATTCGTTGAGAAAGCCACCCATGTCCAATGGGACTCCATCTCCTCGGACATGAAAGATTTGGAACAAGGATTCAAAATGGCTGAAAAAGAGCAATCGCTGAAAGGAGCCGACTGCCCTGAAACCCTCCAAGAATTCCTAGAAACTCGGAAACAAAAAATGACGGATCTTGAGCAATCCTTCCAATTGGCCAAATCATCGTTCAAGGATTGCTGCGAATTCTACGGGGAGAACGAAAAAACCACTCCTCCCAACATCTTCTTCCAGAAGTTGGCTCACTTCGTCGCCAATTATAATAAGTGTCGACAGGAGAATGAGGCGAAGGCCGCTGCTGAGAAGGTAGGAAATGCTGAAAATTGTCTAGAAAGTGCTGAAAAATGACATAAAATATGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGGCCC</site>
                <isoschizomers>
                    <enzyme>ApaI</enzyme>
                    <enzyme>Bsp120I</enzyme>
                    <enzyme>PspOMI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>503 355 126 16</canonical_bands>
                <polymorphic_bands>502 355 127 16</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>499 483 18</canonical_bands>
                <polymorphic_bands>517 483</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>499 381 120</canonical_bands>
                <polymorphic_bands>880 120</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>499 363 120 18</canonical_bands>
                <polymorphic_bands>517 363 120</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>373 297 135 126 69</canonical_bands>
                <polymorphic_bands>423 373 135 69</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>157 108 84 81 70 69 66 60 51 43 39 33 27 19 18 18 16 15 14 12</canonical_bands>
                <polymorphic_bands>157 108 84 81 70 69 66 60 51 43 39 34 33 27 19 18 15 14 12</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>503 355 126 16</canonical_bands>
                <polymorphic_bands>502 355 127 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTGAAGGTGAGAATTTTGAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTGAAAATACCGTAAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>ATTTGAAGGTGAGAATTTTGAATTTTTTGTATTAGAAGGGTCCCTTTAATAGAAGGGCCTCTCTAATAGAAGGTCACTCTGAGAGGAGATTGGGAAAGTGACGCCCCCCCCCCCCCCCTAATTGAAGACCCCCCTCTAGTTGAAGAGTCCCCTCTAATTAAAGAGCCCTCTCTATTGAAAGGGCCCCTCTAATAGAAGGCTCCCCTCTAATTGAAAAGCCCCCTCTGTAGTTGAAGCCCTCCCCAGGTTTTACGGTATTTTCAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTGAAGGTGAGAATTTTGAATTTTTTGTATTAGAAGGGTCCCTTTAATAGAAGGGCCTCTCTAATAGAAGGTCACTCTGAGAGGAGATTGGGAAAGTGACGCCCCCCCCCCCCCCCTAATTGAAGACCCCCCTCTAGTTGAAGAGTCCCCTCTAATTAAAGAGCCCTCTCTATTGAAAGGGYCCCTCTAATAGAAGGCTCCCCTCTAATTGAAAAGCCCCCTCTGTAGTTGAAGCCCTCCCCAGGTTTTACGGTATTTTCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25033</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>41824</contig_pos>
        <strand>+</strand>
        <context>TTTTTAATTG[A/T]AAAAAAAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATCTGAATGTCAAAAAAATGGAAAAAATGTCTAGGTTTTTTTTTAATTG</left_flank>
        <right_flank>AAAAAAAACATTTTTAAGTCTGTAATTGTCAGAAAATTCAGAATTTTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAATGCGGAATTTTCATAAAATCCCCAATTTTCAGGACTAAAACACACTGGTGGCACGACTCCGAACCGCCGAAAAATGTCAAAATCACCGTCGCCGGCGCCACGAAGCTCCGCCCCTCCACCAGTAGCACCTAAGACCCGAGTGGTCTCTGTGGAAAGGGATCGACAATAATTTTTTTTTGTTTTTTTCCCATTTTTCCCCTCAAAAATAGTCTAAATTGTCTAGATTTTCCCTTTTTTCCTTCTCTCTCATTCTTCATCTACACTCAACGGGCATTTCTTTTTCTGAAATTTCTGAGCATTTTCCCCCAAAAATAACTAAAAATCCGGTCCTTTGCTGTCATTTTTAACCGGTCCCCTCTCTTTCTCTCTCTGATTGTCTAATGGTGTAATAACAATGAAAAACCATCAATAATCACAAAAATTTATTGTGGGTCAAGATCTCAAAATCTGAATGTCAAAAAAATGGAAAAAATGTCTAGGTTTTTTTTTAATTGAAAAAAAAACATTTTTAAGTCTGTAATTGTCAGAAAATTCAGAATTTTTAAAAATTTTGAAATTTTAAATTTTCGAAAACAATTTAAAAAACAATTTTCTCTAATTTTTAAAGCAATTGGGTGGGAAAAGAGATAACGAGTGAAAAGCACTGCAAATGGAATCCCTCCATGTCCACGTGGCTTCGTGATGGTCCTCGTTGAAGAAGTGCTCGAGTTTGTGGATTCGTCTGGGAAAAAGTTAATTAGGGGAGGAGTTAATTGACTAATTGGAGGGAAAAATTGATTAAAAGTGTGATTTTTCATATGAAAGTACGGTTTTCTAGACCGCGACCGGCACCAATTTTAACGGTTTTTATATCAAAATGATCCTTAGAATGTCAGCTATCAGAATATATAAATTTCATAGAGAAACTCTAATTTTGAAGGGACCAACGGGTCCAAAAGAGTTACTAGCTTCTTTTTTGAAATCGGATTAATTTTGGGGATTTTCAAAGGCCCAAA</canonical>
            <polymorphic>TTTAATGCGGAATTTTCATAAAATCCCCAATTTTCAGGACTAAAACACACTGGTGGCACGACTCCGAACCGCCGAAAAATGTCAAAATCACCGTCGCCGGCGCCACGAAGCTCCGCCCCTCCACCAGTAGCACCTAAGACCCGAGTGGTCTCTGTGGAAAGGGATCGACAATAATTTTTTTTTGTTTTTTTCCCATTTTTCCCCTCAAAAATAGTCTAAATTGTCTAGATTTTCCCTTTTTTCCTTCTCTCTCATTCTTCATCTACACTCAACGGGCATTTCTTTTTCTGAAATTTCTGAGCATTTTCCCCCAAAAATAACTAAAAATCCGGTCCTTTGCTGTCATTTTTAACCGGTCCCCTCTCTTTCTCTCTCTGATTGTCTAATGGTGTAATAACAATGAAAAACCATCAATAATCACAAAAATTTATTGTGGGTCAAGATCTCAAAATCTGAATGTCAAAAAAATGGAAAAAATGTCTAGGTTTTTTTTTAATTGWAAAAAAAACATTTTTAAGTCTGTAATTGTCAGAAAATTCAGAATTTTTAAAAATTTTGAAATTTTAAATTTTCGAAAACAATTTAAAAAACAATTTTCTCTAATTTTTAAAGCAATTGGGTGGGAAAAGAGATAACGAGTGAAAAGCACTGCAAATGGAATCCCTCCATGTCCACGTGGCTTCGTGATGGTCCTCGTTGAAGAAGTGCTCGAGTTTGTGGATTCGTCTGGGAAAAAGTTAATTAGGGGAGGAGTTAATTGACTAATTGGAGGGAAAAATTGATTAAAAGTGTGATTTTTCATATGAAAGTACGGTTTTCTAGACCGCGACCGGCACCAATTTTAACGGTTTTTATATCAAAATGATCCTTAGAATGTCAGCTATCAGAATATATAAATTTCATAGAGAAACTCTAATTTTGAAGGGACCAACGGGTCCAAAAGAGTTACTAGCTTCTTTTTTGAAATCGGATTAATTTTGGGGATTTTCAAAGGCCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAATGAAAAACCATCAATAATC</pcr_primer_p1>
		<pcr_primer_p2>CTTTTCACTCGTTATCTCTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACAATGAAAAACCATCAATAATCACAAAAATTTATTGTGGGTCAAGATCTCAAAATCTGAATGTCAAAAAAATGGAAAAAATGTCTAGGTTTTTTTTTAATTGAAAAAAAAACATTTTTAAGTCTGTAATTGTCAGAAAATTCAGAATTTTTAAAAATTTTGAAATTTTAAATTTTCGAAAACAATTTAAAAAACAATTTTCTCTAATTTTTAAAGCAATTGGGTGGGAAAAGAGATAACGAGTGAAAAG</canonical_amplicon>
		<polymorphic_amplicon>ACAATGAAAAACCATCAATAATCACAAAAATTTATTGTGGGTCAAGATCTCAAAATCTGAATGTCAAAAAAATGGAAAAAATGTCTAGGTTTTTTTTTAATTGWAAAAAAAACATTTTTAAGTCTGTAATTGTCAGAAAATTCAGAATTTTTAAAAATTTTGAAATTTTAAATTTTCGAAAACAATTTAAAAAACAATTTTCTCTAATTTTTAAAGCAATTGGGTGGGAAAAGAGATAACGAGTGAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25036</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>176371</contig_pos>
        <strand>+</strand>
        <context>ATGCTTTTTT[C/G]TAGATTCGGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAATCTGCATCTGCATACCCTATTATTCAGTTCCCCCAAAATGCTTTTTT</left_flank>
        <right_flank>TAGATTCGGCTTGCCAGAAGACGCAAAACGACTCGGTTCTGATGATGCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGCTGGAAGTGTTGCTGCCGACGCTCATCAAGATCTCAACGATGATATTCTGAACGACGACCTACTGGACGTTCCAAGCATCGATGGGGATCTTCTGGGCGAGACGACGGCCAGTTCAATTGAAGAAGAGCAAAAAGAGACAGAGAAAGTAGAAAAGAAAGGAGAAATGGTGACCGCAGAAGTGATCCGGCTGACAAACCAGTGGATATTGTCACTGTTGAGCAAAATAAGCGAGCTAGAGCTATTCGATTCGGTCTCCCAGTCACTGCGGAGGATCTGGGCTCGGAAGATGCTAAAGCAGCAAGAGCTAAGAGGTAAGAACTAGTTTTTGATGTCGAATTGACGAATTTGGAGTCAATGTCCATGAATTTTGATTAAGGCTGTTCTAAAAAAAAAAAGAAAGTTTTTTTGAATTTGGACTGCTCAAAAATGTGCTAGAATTGTGCTAGAATCTGCATCTGCATACCCTATTATTCAGTTCCCCCAAAATGCTTTTTTCTAGATTCGGCTTGCCAGAAGACGCAAAACGACTCGGTTCTGATGATGCCAAGGCCAGAAGAGCCGAAAGATTCGGAATCCAATCTCCAGCTACTGCTAAACAAGAAAAGGACGAGAAACTGGCTGCTCGTGCCGCTCGTTTCGGTCTTCCAGTAGGCGGTGCCTCTCCAAAAGTGGGCGGAGCCACAAAGGACGCGAAGCTGGCTGAAAGAGCCAAAAGATTCGGAGGAGCTGTGGATGATGCGGAAATGGAGGCGAAAAAGAAGGCTCGATTGGAGAGATTTGGAAATGGATCGAAATAAATTAACCTTTTTTTGTTATTGTACATTTTTCTATTTTTATCTGTTTAGGAGAACATGTGTGATTTTGAGAGGGGAAAATTGGAAAAACTATTCGCTGAAAATTCTCTATTTCCGCTAATTACAAGCATTTCGAGCCATCCCCTTCGAGTTGAAAAATCGATTTACCTTCAAAAATTCCATAGTTCTCTCCGCCTCTCCC</canonical>
            <polymorphic>ATGCTGGAAGTGTTGCTGCCGACGCTCATCAAGATCTCAACGATGATATTCTGAACGACGACCTACTGGACGTTCCAAGCATCGATGGGGATCTTCTGGGCGAGACGACGGCCAGTTCAATTGAAGAAGAGCAAAAAGAGACAGAGAAAGTAGAAAAGAAAGGAGAAATGGTGACCGCAGAAGTGATCCGGCTGACAAACCAGTGGATATTGTCACTGTTGAGCAAAATAAGCGAGCTAGAGCTATTCGATTCGGTCTCCCAGTCACTGCGGAGGATCTGGGCTCGGAAGATGCTAAAGCAGCAAGAGCTAAGAGGTAAGAACTAGTTTTTGATGTCGAATTGACGAATTTGGAGTCAATGTCCATGAATTTTGATTAAGGCTGTTCTAAAAAAAAAAAGAAAGTTTTTTTGAATTTGGACTGCTCAAAAATGTGCTAGAATTGTGCTAGAATCTGCATCTGCATACCCTATTATTCAGTTCCCCCAAAATGCTTTTTTSTAGATTCGGCTTGCCAGAAGACGCAAAACGACTCGGTTCTGATGATGCCAAGGCCAGAAGAGCCGAAAGATTCGGAATCCAATCTCCAGCTACTGCTAAACAAGAAAAGGACGAGAAACTGGCTGCTCGTGCCGCTCGTTTCGGTCTTCCAGTAGGCGGTGCCTCTCCAAAAGTGGGCGGAGCCACAAAGGACGCGAAGCTGGCTGAAAGAGCCAAAAGATTCGGAGGAGCTGTGGATGATGCGGAAATGGAGGCGAAAAAGAAGGCTCGATTGGAGAGATTTGGAAATGGATCGAAATAAATTAACCTTTTTTTGTTATTGTACATTTTTCTATTTTTATCTGTTTAGGAGAACATGTGTGATTTTGAGAGGGGAAAATTGGAAAAACTATTCGCTGAAAATTCTCTATTTCCGCTAATTACAAGCATTTCGAGCCATCCCCTTCGAGTTGAAAAATCGATTTACCTTCAAAAATTCCATAGTTCTCTCCGCCTCTCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 237 113 86 53 11</canonical_bands>
                <polymorphic_bands>553 237 113 86 11</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>500 470 30</canonical_bands>
                <polymorphic_bands>970 30</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTTTGATTAAGGCTGTTCTA</pcr_primer_p1>
		<pcr_primer_p2>GTCCTTTTCTTGTTTAGCAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAATTTTGATTAAGGCTGTTCTAAAAAAAAAAAGAAAGTTTTTTTGAATTTGGACTGCTCAAAAATGTGCTAGAATTGTGCTAGAATCTGCATCTGCATACCCTATTATTCAGTTCCCCCAAAATGCTTTTTTCTAGATTCGGCTTGCCAGAAGACGCAAAACGACTCGGTTCTGATGATGCCAAGGCCAGAAGAGCCGAAAGATTCGGAATCCAATCTCCAGCTACTGCTAAACAAGAAAAGGAC</canonical_amplicon>
		<polymorphic_amplicon>GAATTTTGATTAAGGCTGTTCTAAAAAAAAAAAGAAAGTTTTTTTGAATTTGGACTGCTCAAAAATGTGCTAGAATTGTGCTAGAATCTGCATCTGCATACCCTATTATTCAGTTCCCCCAAAATGCTTTTTTSTAGATTCGGCTTGCCAGAAGACGCAAAACGACTCGGTTCTGATGATGCCAAGGCCAGAAGAGCCGAAAGATTCGGAATCCAATCTCCAGCTACTGCTAAACAAGAAAAGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25037</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>176602</contig_pos>
        <strand></strand>
        <context>TTCGGAGGAG[C/A]TGTGGATGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AGCCACAAAGGACGCGAAGCTGGCTGAAAGAGCCAAAAGATTCGGAGGAG</left_flank>
        <right_flank>TGTGGATGATGCGGAAATGGAGGCGAAAAAGAAGGCTCGATTGGAGAGAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGAGCTAGAGCTATTCGATTCGGTCTCCCAGTCACTGCGGAGGATCTGGGCTCGGAAGATGCTAAAGCAGCAAGAGCTAAGAGGTAAGAACTAGTTTTTGATGTCGAATTGACGAATTTGGAGTCAATGTCCATGAATTTTGATTAAGGCTGTTCTAAAAAAAAAAAGAAAGTTTTTTTGAATTTGGACTGCTCAAAAATGTGCTAGAATTGTGCTAGAATCTGCATCTGCATACCCTATTATTCAGTTCCCCCAAAATGCTTTTTTCTAGATTCGGCTTGCCAGAAGACGCAAAACGACTCGGTTCTGATGATGCCAAGGCCAGAAGAGCCGAAAGATTCGGAATCCAATCTCCAGCTACTGCTAAACAAGAAAAGGACGAGAAACTGGCTGCTCGTGCCGCTCGTTTCGGTCTTCCAGTAGGCGGTGCCTCTCCAAAAGTGGGCGGAGCCACAAAGGACGCGAAGCTGGCTGAAAGAGCCAAAAGATTCGGAGGAGCTGTGGATGATGCGGAAATGGAGGCGAAAAAGAAGGCTCGATTGGAGAGATTTGGAAATGGATCGAAATAAATTAACCTTTTTTTGTTATTGTACATTTTTCTATTTTTATCTGTTTAGGAGAACATGTGTGATTTTGAGAGGGGAAAATTGGAAAAACTATTCGCTGAAAATTCTCTATTTCCGCTAATTACAAGCATTTCGAGCCATCCCCTTCGAGTTGAAAAATCGATTTACCTTCAAAAATTCCATAGTTCTCTCCGCCTCTCCCGTCTCCCTTCAAAATTTCGTCGAAATTTCTAAACTTTTCCTATTATCCTTGTCAGAGAAAAAAAGGTTGAGTCGAAGTGTGTGCGATGTTTATAAACAAATATCTGAAAACGTAAACAACCGGAAACATTTGAAACGAGTGCGACAGTAACCCGGCGGGAAAATGTTAAATTTACCTGTTTTTTAGTTTTTCTCATATTTTGCAGCAAATTTCGTCGAATATGGTTTGTTT</canonical>
            <polymorphic>GCGAGCTAGAGCTATTCGATTCGGTCTCCCAGTCACTGCGGAGGATCTGGGCTCGGAAGATGCTAAAGCAGCAAGAGCTAAGAGGTAAGAACTAGTTTTTGATGTCGAATTGACGAATTTGGAGTCAATGTCCATGAATTTTGATTAAGGCTGTTCTAAAAAAAAAAAGAAAGTTTTTTTGAATTTGGACTGCTCAAAAATGTGCTAGAATTGTGCTAGAATCTGCATCTGCATACCCTATTATTCAGTTCCCCCAAAATGCTTTTTTCTAGATTCGGCTTGCCAGAAGACGCAAAACGACTCGGTTCTGATGATGCCAAGGCCAGAAGAGCCGAAAGATTCGGAATCCAATCTCCAGCTACTGCTAAACAAGAAAAGGACGAGAAACTGGCTGCTCGTGCCGCTCGTTTCGGTCTTCCAGTAGGCGGTGCCTCTCCAAAAGTGGGCGGAGCCACAAAGGACGCGAAGCTGGCTGAAAGAGCCAAAAGATTCGGAGGAGMTGTGGATGATGCGGAAATGGAGGCGAAAAAGAAGGCTCGATTGGAGAGATTTGGAAATGGATCGAAATAAATTAACCTTTTTTTGTTATTGTACATTTTTCTATTTTTATCTGTTTAGGAGAACATGTGTGATTTTGAGAGGGGAAAATTGGAAAAACTATTCGCTGAAAATTCTCTATTTCCGCTAATTACAAGCATTTCGAGCCATCCCCTTCGAGTTGAAAAATCGATTTACCTTCAAAAATTCCATAGTTCTCTCCGCCTCTCCCGTCTCCCTTCAAAATTTCGTCGAAATTTCTAAACTTTTCCTATTATCCTTGTCAGAGAAAAAAAGGTTGAGTCGAAGTGTGTGCGATGTTTATAAACAAATATCTGAAAACGTAAACAACCGGAAACATTTGAAACGAGTGCGACAGTAACCCGGCGGGAAAATGTTAAATTTACCTGTTTTTTAGTTTTTCTCATATTTTGCAGCAAATTTCGTCGAATATGGTTTGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>501 281 110 66 31 6 5</canonical_bands>
                <polymorphic_bands>532 281 110 66 6 5</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>296 169 128 73 60 44 40 36 33 27 26 18 17 9 9 6 5 4</canonical_bands>
                <polymorphic_bands>296 169 128 73 60 54 44 40 33 27 26 17 9 9 6 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATCTCCAGCTACTGCTAAAC</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGTTAATTTATTTCGATCC</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>CAATCTCCAGCTACTGCTAAACAAGAAAAGGACGAGAAACTGGCTGCTCGTGCCGCTCGTTTCGGTCTTCCAGTAGGCGGTGCCTCTCCAAAAGTGGGCGGAGCCACAAAGGACGCGAAGCTGGCTGAAAGAGCCAAAAGATTCGGAGGAGCTGTGGATGATGCGGAAATGGAGGCGAAAAAGAAGGCTCGATTGGAGAGATTTGGAAATGGATCGAAATAAATTAACCTTTT</canonical_amplicon>
		<polymorphic_amplicon>CAATCTCCAGCTACTGCTAAACAAGAAAAGGACGAGAAACTGGCTGCTCGTGCCGCTCGTTTCGGTCTTCCAGTAGGCGGTGCCTCTCCAAAAGTGGGCGGAGCCACAAAGGACGCGAAGCTGGCTGAAAGAGCCAAAAGATTCGGAGGAGMTGTGGATGATGCGGAAATGGAGGCGAAAAAGAAGGCTCGATTGGAGAGATTTGGAAATGGATCGAAATAAATTAACCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25038</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>190365</contig_pos>
        <strand>+</strand>
        <context>ATTTTAATGG[A/G]TCATGAATCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTTTCGAGGACTTTAACATCAAAATATTGATTTAAAAGATTTTAATGG</left_flank>
        <right_flank>TCATGAATCTTTCTTTTTGAAAAAAAAATCATCTAGAAATTCGAAATTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTCGAATTTCCAGCCCTTCCACATCATCCGCACCGGTCAAGCCTAAAAAGAAGAAAGAGAAGCAAGAGCCAAGATGTAATTCCCTTTTAAAACTCAAAAATTTTCATTAAACCTAAAATCTGAAAATTTCAGACGATACGTCTACTTCCACAATACCATTCACCCAGATGGCCAGCAGATATGATATGGACGCTGATAGTGACACAGAGCTGGCTGATTGTCTTCCATTCGCTTATATCGGTGATAAGTAAGTGATAAAAAGCTTGGAAAATGCCAAATTCTAGTTCTAAATGCTTGAAAACCCCTAAAAACCTCTTTTTCAGCCGAAAATGACAAATTTTGAGCTGAAAATCGCTATTGCTACCGGTGGCCGAGTTTTAGAAATTTCTAGGCCACCCCACCTCGGCCAGCTGTTTTTTTTTGGGAAAAACTGTCATTTTTTGGGCATTTTCGAGGACTTTAACATCAAAATATTGATTTAAAAGATTTTAATGGATCATGAATCTTTCTTTTTGAAAAAAAAATCATCTAGAAATTCGAAATTTCTAAAAAAATTTTTTTTCGAAAACATTAAATTTCTAAAATTGTCTGTGACACACTGAAAATAAACGAATTTTGCCTGAAAATATTGGAAAATCTCTGAAAAATCTTCGAAAAAATGGTGAAATAAGAGGAAAAACTATCGGTGACCTAGAAATTAAAAAAAGAACTCGGCGACCTCGAATTTTTGGTTGTTTTCAGCGACTTTGAGGGGTTTTTGAGCTCAAAATTTCGACGAAAAGCTATCAAAACACTGAAAACTTGATATTTTCCTCCAGATGGCGTACAGAATACAGTCGTGGAGTGCCGATCCCATGCGAGACTACTCTGCCACGTGCGGTTGTTATGGATGACGGCTTCGTTTTGAAGCCAAAAGACGACTATCGACATCCGGTGAAACGAATCGCTTGTTCTGATCGAGCAGAGTATTTTGATGAGGAGAGATTCGAGCTTTTG</canonical>
            <polymorphic>AATTTTCGAATTTCCAGCCCTTCCACATCATCCGCACCGGTCAAGCCTAAAAAGAAGAAAGAGAAGCAAGAGCCAAGATGTAATTCCCTTTTAAAACTCAAAAATTTTCATTAAACCTAAAATCTGAAAATTTCAGACGATACGTCTACTTCCACAATACCATTCACCCAGATGGCCAGCAGATATGATATGGACGCTGATAGTGACACAGAGCTGGCTGATTGTCTTCCATTCGCTTATATCGGTGATAAGTAAGTGATAAAAAGCTTGGAAAATGCCAAATTCTAGTTCTAAATGCTTGAAAACCCCTAAAAACCTCTTTTTCAGCCGAAAATGACAAATTTTGAGCTGAAAATCGCTATTGCTACCGGTGGCCGAGTTTTAGAAATTTCTAGGCCACCCCACCTCGGCCAGCTGTTTTTTTTTGGGAAAAACTGTCATTTTTTGGGCATTTTCGAGGACTTTAACATCAAAATATTGATTTAAAAGATTTTAATGGRTCATGAATCTTTCTTTTTGAAAAAAAAATCATCTAGAAATTCGAAATTTCTAAAAAAATTTTTTTTCGAAAACATTAAATTTCTAAAATTGTCTGTGACACACTGAAAATAAACGAATTTTGCCTGAAAATATTGGAAAATCTCTGAAAAATCTTCGAAAAAATGGTGAAATAAGAGGAAAAACTATCGGTGACCTAGAAATTAAAAAAAGAACTCGGCGACCTCGAATTTTTGGTTGTTTTCAGCGACTTTGAGGGGTTTTTGAGCTCAAAATTTCGACGAAAAGCTATCAAAACACTGAAAACTTGATATTTTCCTCCAGATGGCGTACAGAATACAGTCGTGGAGTGCCGATCCCATGCGAGACTACTCTGCCACGTGCGGTTGTTATGGATGACGGCTTCGTTTTGAAGCCAAAAGACGACTATCGACATCCGGTGAAACGAATCGCTTGTTCTGATCGAGCAGAGTATTTTGATGAGGAGAGATTCGAGCTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>498 354 106 42</canonical_bands>
                <polymorphic_bands>852 106 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGGGAAAAACTGTCATT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCGAAGATTTTTCAGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGGGAAAAACTGTCATTTTTTGGGCATTTTCGAGGACTTTAACATCAAAATATTGATTTAAAAGATTTTAATGGATCATGAATCTTTCTTTTTGAAAAAAAAATCATCTAGAAATTCGAAATTTCTAAAAAAATTTTTTTTCGAAAACATTAAATTTCTAAAATTGTCTGTGACACACTGAAAATAAACGAATTTTGCCTGAAAATATTGGAAAATCTCTGAAAAATCTTCGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGGGAAAAACTGTCATTTTTTGGGCATTTTCGAGGACTTTAACATCAAAATATTGATTTAAAAGATTTTAATGGRTCATGAATCTTTCTTTTTGAAAAAAAAATCATCTAGAAATTCGAAATTTCTAAAAAAATTTTTTTTCGAAAACATTAAATTTCTAAAATTGTCTGTGACACACTGAAAATAAACGAATTTTGCCTGAAAATATTGGAAAATCTCTGAAAAATCTTCGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25039</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>199186</contig_pos>
        <strand></strand>
        <context>CGGGCAAAGA[A/G]AAAGCGCACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAGGATTGAGGGTGTGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGA</left_flank>
        <right_flank>AAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACATCTGTACGC</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGATCAACTTTAAAGGTGCATAGCTCAAAAACTACGGTAGCTATAAAAAAGCCGTTGCCTACAAAAATGTGTAAAATTGAAATTTACGCATTTCACTAGTTAACCACTATTGTGTATCTTTCATGAGAAACGAGATAATTAGTCTCAGACTTTTTGCAAATTTTCGAAAAATTAAAACCCTTTTTGTCCTTATGACCTATAATTTTTGAGAAGTTCAAAAAACTTTTTTGGTTTTCTGAAAGTAAAAAATCTCTTTTCGAGTTTATCAGAATTTTCTAGAACTTTATATCTTTTCTCCTAAATATTTGAATTAGTAAATAATTCTAGCTTTAAATGATATTTTGGCATGAAGTAATTGCGAAAATTGAACGTGGAAGTCTTAAAGGTGGGGGGTTTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGGAGGCAAGGATTGAGGGTGTGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAAAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACATCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAACTTTACAAAATACCAAAAAATTCGTCAAAAACCCATTGAAGTTGACGCGCCCTTCGTCCGCTGGCGCCTAACTGACCGCGCCAACTTTAAAGACGCGTAGCTCAAAAACTACAGTAGCTAGAAAAAAGTTGTCAACTACAAAAATGAAACTCTAGTTTAAATCAGTTGATACATAAATTTTCAGACAATTTCAGCTTTTGCTGAAATCGTTATAAAGTTCTGAAAATCCTAAACCCGGGATAATCGAATTCTTGAGAAACAAAAAAAACGCGCGTGGGAAAAACGAAAAAACGCGAGCAATGAGCTTTTCAGAGAAAGTAGATCAAGAGATCTTTATAATGAGAGAGTCTAGAGAA</canonical>
            <polymorphic>GTGGATCAACTTTAAAGGTGCATAGCTCAAAAACTACGGTAGCTATAAAAAAGCCGTTGCCTACAAAAATGTGTAAAATTGAAATTTACGCATTTCACTAGTTAACCACTATTGTGTATCTTTCATGAGAAACGAGATAATTAGTCTCAGACTTTTTGCAAATTTTCGAAAAATTAAAACCCTTTTTGTCCTTATGACCTATAATTTTTGAGAAGTTCAAAAAACTTTTTTGGTTTTCTGAAAGTAAAAAATCTCTTTTCGAGTTTATCAGAATTTTCTAGAACTTTATATCTTTTCTCCTAAATATTTGAATTAGTAAATAATTCTAGCTTTAAATGATATTTTGGCATGAAGTAATTGCGAAAATTGAACGTGGAAGTCTTAAAGGTGGGGGGTTTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGGAGGCAAGGATTGAGGGTGTGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGARAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACATCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAACTTTACAAAATACCAAAAAATTCGTCAAAAACCCATTGAAGTTGACGCGCCCTTCGTCCGCTGGCGCCTAACTGACCGCGCCAACTTTAAAGACGCGTAGCTCAAAAACTACAGTAGCTAGAAAAAAGTTGTCAACTACAAAAATGAAACTCTAGTTTAAATCAGTTGATACATAAATTTTCAGACAATTTCAGCTTTTGCTGAAATCGTTATAAAGTTCTGAAAATCCTAAACCCGGGATAATCGAATTCTTGAGAAACAAAAAAAACGCGCGTGGGAAAAACGAAAAAACGCGAGCAATGAGCTTTTCAGAGAAAGTAGATCAAGAGATCTTTATAATGAGAGAGTCTAGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTAATTGCGAAAATTGAAC</pcr_primer_p1>
		<pcr_primer_p2>TAGAGTATGCATTCTACCGTGAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAGTAATTGCGAAAATTGAACGTGGAAGTCTTAAAGGTGGGGGGTTTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGGAGGCAAGGATTGAGGGTGTGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAAAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACATCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTA</canonical_amplicon>
		<polymorphic_amplicon>GAAGTAATTGCGAAAATTGAACGTGGAAGTCTTAAAGGTGGGGGGTTTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGGAGGCAAGGATTGAGGGTGTGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGARAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACATCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25040</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>199228</contig_pos>
        <strand></strand>
        <context>GAGGACGACA[T/G]CTGTACGCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GGCAAAGAAAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACA</left_flank>
        <right_flank>CTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATAAAAAAGCCGTTGCCTACAAAAATGTGTAAAATTGAAATTTACGCATTTCACTAGTTAACCACTATTGTGTATCTTTCATGAGAAACGAGATAATTAGTCTCAGACTTTTTGCAAATTTTCGAAAAATTAAAACCCTTTTTGTCCTTATGACCTATAATTTTTGAGAAGTTCAAAAAACTTTTTTGGTTTTCTGAAAGTAAAAAATCTCTTTTCGAGTTTATCAGAATTTTCTAGAACTTTATATCTTTTCTCCTAAATATTTGAATTAGTAAATAATTCTAGCTTTAAATGATATTTTGGCATGAAGTAATTGCGAAAATTGAACGTGGAAGTCTTAAAGGTGGGGGGTTTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGGAGGCAAGGATTGAGGGTGTGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAAAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACATCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAACTTTACAAAATACCAAAAAATTCGTCAAAAACCCATTGAAGTTGACGCGCCCTTCGTCCGCTGGCGCCTAACTGACCGCGCCAACTTTAAAGACGCGTAGCTCAAAAACTACAGTAGCTAGAAAAAAGTTGTCAACTACAAAAATGAAACTCTAGTTTAAATCAGTTGATACATAAATTTTCAGACAATTTCAGCTTTTGCTGAAATCGTTATAAAGTTCTGAAAATCCTAAACCCGGGATAATCGAATTCTTGAGAAACAAAAAAAACGCGCGTGGGAAAAACGAAAAAACGCGAGCAATGAGCTTTTCAGAGAAAGTAGATCAAGAGATCTTTATAATGAGAGAGTCTAGAGAAATCAGAGGAAAAAGGAAAATTGAAAAGAAAAGAATGTATTCT</canonical>
            <polymorphic>CTATAAAAAAGCCGTTGCCTACAAAAATGTGTAAAATTGAAATTTACGCATTTCACTAGTTAACCACTATTGTGTATCTTTCATGAGAAACGAGATAATTAGTCTCAGACTTTTTGCAAATTTTCGAAAAATTAAAACCCTTTTTGTCCTTATGACCTATAATTTTTGAGAAGTTCAAAAAACTTTTTTGGTTTTCTGAAAGTAAAAAATCTCTTTTCGAGTTTATCAGAATTTTCTAGAACTTTATATCTTTTCTCCTAAATATTTGAATTAGTAAATAATTCTAGCTTTAAATGATATTTTGGCATGAAGTAATTGCGAAAATTGAACGTGGAAGTCTTAAAGGTGGGGGGTTTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGGAGGCAAGGATTGAGGGTGTGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAAAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAKCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAACTTTACAAAATACCAAAAAATTCGTCAAAAACCCATTGAAGTTGACGCGCCCTTCGTCCGCTGGCGCCTAACTGACCGCGCCAACTTTAAAGACGCGTAGCTCAAAAACTACAGTAGCTAGAAAAAAGTTGTCAACTACAAAAATGAAACTCTAGTTTAAATCAGTTGATACATAAATTTTCAGACAATTTCAGCTTTTGCTGAAATCGTTATAAAGTTCTGAAAATCCTAAACCCGGGATAATCGAATTCTTGAGAAACAAAAAAAACGCGCGTGGGAAAAACGAAAAAACGCGAGCAATGAGCTTTTCAGAGAAAGTAGATCAAGAGATCTTTATAATGAGAGAGTCTAGAGAAATCAGAGGAAAAAGGAAAATTGAAAAGAAAAGAATGTATTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTAATTGCGAAAATTGAAC</pcr_primer_p1>
		<pcr_primer_p2>TAGAGTATGCATTCTACCGTGAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAGTAATTGCGAAAATTGAACGTGGAAGTCTTAAAGGTGGGGGGTTTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGGAGGCAAGGATTGAGGGTGTGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAAAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACATCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTA</canonical_amplicon>
		<polymorphic_amplicon>GAAGTAATTGCGAAAATTGAACGTGGAAGTCTTAAAGGTGGGGGGTTTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGGAGGCAAGGATTGAGGGTGTGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAAAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAKCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25041</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>199248</contig_pos>
        <strand></strand>
        <context>GAGTGACATT[T/A]AGYGTTGTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CCGATTGCATACATAAAGGCGAGGACGACATCTGTACGCAGAGTGACATT</left_flank>
        <right_flank>AGCGTTGTACACCGTCACGGTAGAATGCATACTCTAGCTACAAAAAAACT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAAAATGTGTAAAATTGAAATTTACGCATTTCACTAGTTAACCACTATTGTGTATCTTTCATGAGAAACGAGATAATTAGTCTCAGACTTTTTGCAAATTTTCGAAAAATTAAAACCCTTTTTGTCCTTATGACCTATAATTTTTGAGAAGTTCAAAAAACTTTTTTGGTTTTCTGAAAGTAAAAAATCTCTTTTCGAGTTTATCAGAATTTTCTAGAACTTTATATCTTTTCTCCTAAATATTTGAATTAGTAAATAATTCTAGCTTTAAATGATATTTTGGCATGAAGTAATTGCGAAAATTGAACGTGGAAGTCTTAAAGGTGGGGGGTTTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGGAGGCAAGGATTGAGGGTGTGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAAAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACATCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAACTTTACAAAATACCAAAAAATTCGTCAAAAACCCATTGAAGTTGACGCGCCCTTCGTCCGCTGGCGCCTAACTGACCGCGCCAACTTTAAAGACGCGTAGCTCAAAAACTACAGTAGCTAGAAAAAAGTTGTCAACTACAAAAATGAAACTCTAGTTTAAATCAGTTGATACATAAATTTTCAGACAATTTCAGCTTTTGCTGAAATCGTTATAAAGTTCTGAAAATCCTAAACCCGGGATAATCGAATTCTTGAGAAACAAAAAAAACGCGCGTGGGAAAAACGAAAAAACGCGAGCAATGAGCTTTTCAGAGAAAGTAGATCAAGAGATCTTTATAATGAGAGAGTCTAGAGAAATCAGAGGAAAAAGGAAAATTGAAAAGAAAAGAATGTATTCTATTGGGATTAAACGGATTAT</canonical>
            <polymorphic>ACAAAAATGTGTAAAATTGAAATTTACGCATTTCACTAGTTAACCACTATTGTGTATCTTTCATGAGAAACGAGATAATTAGTCTCAGACTTTTTGCAAATTTTCGAAAAATTAAAACCCTTTTTGTCCTTATGACCTATAATTTTTGAGAAGTTCAAAAAACTTTTTTGGTTTTCTGAAAGTAAAAAATCTCTTTTCGAGTTTATCAGAATTTTCTAGAACTTTATATCTTTTCTCCTAAATATTTGAATTAGTAAATAATTCTAGCTTTAAATGATATTTTGGCATGAAGTAATTGCGAAAATTGAACGTGGAAGTCTTAAAGGTGGGGGGTTTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGGAGGCAAGGATTGAGGGTGTGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAAAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACATCTGTACGCAGAGTGACATTWAGCGTTGTACACCGTCACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAACTTTACAAAATACCAAAAAATTCGTCAAAAACCCATTGAAGTTGACGCGCCCTTCGTCCGCTGGCGCCTAACTGACCGCGCCAACTTTAAAGACGCGTAGCTCAAAAACTACAGTAGCTAGAAAAAAGTTGTCAACTACAAAAATGAAACTCTAGTTTAAATCAGTTGATACATAAATTTTCAGACAATTTCAGCTTTTGCTGAAATCGTTATAAAGTTCTGAAAATCCTAAACCCGGGATAATCGAATTCTTGAGAAACAAAAAAAACGCGCGTGGGAAAAACGAAAAAACGCGAGCAATGAGCTTTTCAGAGAAAGTAGATCAAGAGATCTTTATAATGAGAGAGTCTAGAGAAATCAGAGGAAAAAGGAAAATTGAAAAGAAAAGAATGTATTCTATTGGGATTAAACGGATTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACGTGGAAGTCTTAAAGGTG</pcr_primer_p1>
		<pcr_primer_p2>ACAGGAGATTTTTCGTAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>AACGTGGAAGTCTTAAAGGTGGGGGGTTTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGGAGGCAAGGATTGAGGGTGTGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAAAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACATCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGT</canonical_amplicon>
		<polymorphic_amplicon>AACGTGGAAGTCTTAAAGGTGGGGGGTTTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGGAGGCAAGGATTGAGGGTGTGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAAAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACATCTGTACGCAGAGTGACATTWAGCGTTGTACACCGTCACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25042</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>199251</contig_pos>
        <strand></strand>
        <context>TGACATTWAG[C/T]GTTGTACACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGCATACATAAAGGCGAGGACGACATCTGTACGCAGAGTGACATTTAG</left_flank>
        <right_flank>GTTGTACACCGTCACGGTAGAATGCATACTCTAGCTACAAAAAAACTACG</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATGTGTAAAATTGAAATTTACGCATTTCACTAGTTAACCACTATTGTGTATCTTTCATGAGAAACGAGATAATTAGTCTCAGACTTTTTGCAAATTTTCGAAAAATTAAAACCCTTTTTGTCCTTATGACCTATAATTTTTGAGAAGTTCAAAAAACTTTTTTGGTTTTCTGAAAGTAAAAAATCTCTTTTCGAGTTTATCAGAATTTTCTAGAACTTTATATCTTTTCTCCTAAATATTTGAATTAGTAAATAATTCTAGCTTTAAATGATATTTTGGCATGAAGTAATTGCGAAAATTGAACGTGGAAGTCTTAAAGGTGGGGGGTTTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGGAGGCAAGGATTGAGGGTGTGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAAAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACATCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAACTTTACAAAATACCAAAAAATTCGTCAAAAACCCATTGAAGTTGACGCGCCCTTCGTCCGCTGGCGCCTAACTGACCGCGCCAACTTTAAAGACGCGTAGCTCAAAAACTACAGTAGCTAGAAAAAAGTTGTCAACTACAAAAATGAAACTCTAGTTTAAATCAGTTGATACATAAATTTTCAGACAATTTCAGCTTTTGCTGAAATCGTTATAAAGTTCTGAAAATCCTAAACCCGGGATAATCGAATTCTTGAGAAACAAAAAAAACGCGCGTGGGAAAAACGAAAAAACGCGAGCAATGAGCTTTTCAGAGAAAGTAGATCAAGAGATCTTTATAATGAGAGAGTCTAGAGAAATCAGAGGAAAAAGGAAAATTGAAAAGAAAAGAATGTATTCTATTGGGATTAAACGGATTATTAT</canonical>
            <polymorphic>AAAATGTGTAAAATTGAAATTTACGCATTTCACTAGTTAACCACTATTGTGTATCTTTCATGAGAAACGAGATAATTAGTCTCAGACTTTTTGCAAATTTTCGAAAAATTAAAACCCTTTTTGTCCTTATGACCTATAATTTTTGAGAAGTTCAAAAAACTTTTTTGGTTTTCTGAAAGTAAAAAATCTCTTTTCGAGTTTATCAGAATTTTCTAGAACTTTATATCTTTTCTCCTAAATATTTGAATTAGTAAATAATTCTAGCTTTAAATGATATTTTGGCATGAAGTAATTGCGAAAATTGAACGTGGAAGTCTTAAAGGTGGGGGGTTTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGGAGGCAAGGATTGAGGGTGTGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAAAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACATCTGTACGCAGAGTGACATTTAGYGTTGTACACCGTCACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAACTTTACAAAATACCAAAAAATTCGTCAAAAACCCATTGAAGTTGACGCGCCCTTCGTCCGCTGGCGCCTAACTGACCGCGCCAACTTTAAAGACGCGTAGCTCAAAAACTACAGTAGCTAGAAAAAAGTTGTCAACTACAAAAATGAAACTCTAGTTTAAATCAGTTGATACATAAATTTTCAGACAATTTCAGCTTTTGCTGAAATCGTTATAAAGTTCTGAAAATCCTAAACCCGGGATAATCGAATTCTTGAGAAACAAAAAAAACGCGCGTGGGAAAAACGAAAAAACGCGAGCAATGAGCTTTTCAGAGAAAGTAGATCAAGAGATCTTTATAATGAGAGAGTCTAGAGAAATCAGAGGAAAAAGGAAAATTGAAAAGAAAAGAATGTATTCTATTGGGATTAAACGGATTATTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACGTGGAAGTCTTAAAGGTG</pcr_primer_p1>
		<pcr_primer_p2>ACAGGAGATTTTTCGTAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>AACGTGGAAGTCTTAAAGGTGGGGGGTTTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGGAGGCAAGGATTGAGGGTGTGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAAAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACATCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGT</canonical_amplicon>
		<polymorphic_amplicon>AACGTGGAAGTCTTAAAGGTGGGGGGTTTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGGAGGCAAGGATTGAGGGTGTGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAAAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACATCTGTACGCAGAGTGACATTTAGYGTTGTACACCGTCACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25043</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>199332</contig_pos>
        <strand></strand>
        <context>CCTTTAAAAC[T/C]TTAMAAAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAAC</left_flank>
        <right_flank>TTACAAAATACCAAAAAATTCGTCAAAAACCCATTGAAGTTGACGCGCCC</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGACTTTTTGCAAATTTTCGAAAAATTAAAACCCTTTTTGTCCTTATGACCTATAATTTTTGAGAAGTTCAAAAAACTTTTTTGGTTTTCTGAAAGTAAAAAATCTCTTTTCGAGTTTATCAGAATTTTCTAGAACTTTATATCTTTTCTCCTAAATATTTGAATTAGTAAATAATTCTAGCTTTAAATGATATTTTGGCATGAAGTAATTGCGAAAATTGAACGTGGAAGTCTTAAAGGTGGGGGGTTTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGGAGGCAAGGATTGAGGGTGTGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAAAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACATCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAACTTTACAAAATACCAAAAAATTCGTCAAAAACCCATTGAAGTTGACGCGCCCTTCGTCCGCTGGCGCCTAACTGACCGCGCCAACTTTAAAGACGCGTAGCTCAAAAACTACAGTAGCTAGAAAAAAGTTGTCAACTACAAAAATGAAACTCTAGTTTAAATCAGTTGATACATAAATTTTCAGACAATTTCAGCTTTTGCTGAAATCGTTATAAAGTTCTGAAAATCCTAAACCCGGGATAATCGAATTCTTGAGAAACAAAAAAAACGCGCGTGGGAAAAACGAAAAAACGCGAGCAATGAGCTTTTCAGAGAAAGTAGATCAAGAGATCTTTATAATGAGAGAGTCTAGAGAAATCAGAGGAAAAAGGAAAATTGAAAAGAAAAGAATGTATTCTATTGGGATTAAACGGATTATTATTGTTATTTTCCTGATTATAGGTGAATAGAAATAATATAAAATGAGTATTTTTCATTTGAAAATCTTTTATTCGGAGGTTAG</canonical>
            <polymorphic>TCAGACTTTTTGCAAATTTTCGAAAAATTAAAACCCTTTTTGTCCTTATGACCTATAATTTTTGAGAAGTTCAAAAAACTTTTTTGGTTTTCTGAAAGTAAAAAATCTCTTTTCGAGTTTATCAGAATTTTCTAGAACTTTATATCTTTTCTCCTAAATATTTGAATTAGTAAATAATTCTAGCTTTAAATGATATTTTGGCATGAAGTAATTGCGAAAATTGAACGTGGAAGTCTTAAAGGTGGGGGGTTTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGGAGGCAAGGATTGAGGGTGTGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAAAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACATCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAACYTTACAAAATACCAAAAAATTCGTCAAAAACCCATTGAAGTTGACGCGCCCTTCGTCCGCTGGCGCCTAACTGACCGCGCCAACTTTAAAGACGCGTAGCTCAAAAACTACAGTAGCTAGAAAAAAGTTGTCAACTACAAAAATGAAACTCTAGTTTAAATCAGTTGATACATAAATTTTCAGACAATTTCAGCTTTTGCTGAAATCGTTATAAAGTTCTGAAAATCCTAAACCCGGGATAATCGAATTCTTGAGAAACAAAAAAAACGCGCGTGGGAAAAACGAAAAAACGCGAGCAATGAGCTTTTCAGAGAAAGTAGATCAAGAGATCTTTATAATGAGAGAGTCTAGAGAAATCAGAGGAAAAAGGAAAATTGAAAAGAAAAGAATGTATTCTATTGGGATTAAACGGATTATTATTGTTATTTTCCTGATTATAGGTGAATAGAAATAATATAAAATGAGTATTTTTCATTTGAAAATCTTTTATTCGGAGGTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATGCATACTCTAGCTACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTTATAACGATTTCAGCAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>GAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAACTTTACAAAATACCAAAAAATTCGTCAAAAACCCATTGAAGTTGACGCGCCCTTCGTCCGCTGGCGCCTAACTGACCGCGCCAACTTTAAAGACGCGTAGCTCAAAAACTACAGTAGCTAGAAAAAAGTTGTCAACTACAAAAATGAAACTCTAGTTTAAATCAGTTGATACATAAATTTTCAGACAATTTCAGCTTTTGCTGAAATCGTTATAAAG</canonical_amplicon>
		<polymorphic_amplicon>GAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAACYTTACAAAATACCAAAAAATTCGTCAAAAACCCATTGAAGTTGACGCGCCCTTCGTCCGCTGGCGCCTAACTGACCGCGCCAACTTTAAAGACGCGTAGCTCAAAAACTACAGTAGCTAGAAAAAAGTTGTCAACTACAAAAATGAAACTCTAGTTTAAATCAGTTGATACATAAATTTTCAGACAATTTCAGCTTTTGCTGAAATCGTTATAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25044</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>199336</contig_pos>
        <strand></strand>
        <context>TAAAACYTTA[C/A]AAAATACCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAACTTTA</left_flank>
        <right_flank>AAAATACCAAAAAATTCGTCAAAAACCCATTGAAGTTGACGCGCCCTTCG</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTTTGCAAATTTTCGAAAAATTAAAACCCTTTTTGTCCTTATGACCTATAATTTTTGAGAAGTTCAAAAAACTTTTTTGGTTTTCTGAAAGTAAAAAATCTCTTTTCGAGTTTATCAGAATTTTCTAGAACTTTATATCTTTTCTCCTAAATATTTGAATTAGTAAATAATTCTAGCTTTAAATGATATTTTGGCATGAAGTAATTGCGAAAATTGAACGTGGAAGTCTTAAAGGTGGGGGGTTTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGGAGGCAAGGATTGAGGGTGTGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAAAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACATCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAACTTTACAAAATACCAAAAAATTCGTCAAAAACCCATTGAAGTTGACGCGCCCTTCGTCCGCTGGCGCCTAACTGACCGCGCCAACTTTAAAGACGCGTAGCTCAAAAACTACAGTAGCTAGAAAAAAGTTGTCAACTACAAAAATGAAACTCTAGTTTAAATCAGTTGATACATAAATTTTCAGACAATTTCAGCTTTTGCTGAAATCGTTATAAAGTTCTGAAAATCCTAAACCCGGGATAATCGAATTCTTGAGAAACAAAAAAAACGCGCGTGGGAAAAACGAAAAAACGCGAGCAATGAGCTTTTCAGAGAAAGTAGATCAAGAGATCTTTATAATGAGAGAGTCTAGAGAAATCAGAGGAAAAAGGAAAATTGAAAAGAAAAGAATGTATTCTATTGGGATTAAACGGATTATTATTGTTATTTTCCTGATTATAGGTGAATAGAAATAATATAAAATGAGTATTTTTCATTTGAAAATCTTTTATTCGGAGGTTAGAGAG</canonical>
            <polymorphic>ACTTTTTGCAAATTTTCGAAAAATTAAAACCCTTTTTGTCCTTATGACCTATAATTTTTGAGAAGTTCAAAAAACTTTTTTGGTTTTCTGAAAGTAAAAAATCTCTTTTCGAGTTTATCAGAATTTTCTAGAACTTTATATCTTTTCTCCTAAATATTTGAATTAGTAAATAATTCTAGCTTTAAATGATATTTTGGCATGAAGTAATTGCGAAAATTGAACGTGGAAGTCTTAAAGGTGGGGGGTTTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGGAGGCAAGGATTGAGGGTGTGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAAAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACATCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAACTTTAMAAAATACCAAAAAATTCGTCAAAAACCCATTGAAGTTGACGCGCCCTTCGTCCGCTGGCGCCTAACTGACCGCGCCAACTTTAAAGACGCGTAGCTCAAAAACTACAGTAGCTAGAAAAAAGTTGTCAACTACAAAAATGAAACTCTAGTTTAAATCAGTTGATACATAAATTTTCAGACAATTTCAGCTTTTGCTGAAATCGTTATAAAGTTCTGAAAATCCTAAACCCGGGATAATCGAATTCTTGAGAAACAAAAAAAACGCGCGTGGGAAAAACGAAAAAACGCGAGCAATGAGCTTTTCAGAGAAAGTAGATCAAGAGATCTTTATAATGAGAGAGTCTAGAGAAATCAGAGGAAAAAGGAAAATTGAAAAGAAAAGAATGTATTCTATTGGGATTAAACGGATTATTATTGTTATTTTCCTGATTATAGGTGAATAGAAATAATATAAAATGAGTATTTTTCATTTGAAAATCTTTTATTCGGAGGTTAGAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATGCATACTCTAGCTACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTTATAACGATTTCAGCAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>GAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAACTTTACAAAATACCAAAAAATTCGTCAAAAACCCATTGAAGTTGACGCGCCCTTCGTCCGCTGGCGCCTAACTGACCGCGCCAACTTTAAAGACGCGTAGCTCAAAAACTACAGTAGCTAGAAAAAAGTTGTCAACTACAAAAATGAAACTCTAGTTTAAATCAGTTGATACATAAATTTTCAGACAATTTCAGCTTTTGCTGAAATCGTTATAAAG</canonical_amplicon>
		<polymorphic_amplicon>GAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAACTTTAMAAAATACCAAAAAATTCGTCAAAAACCCATTGAAGTTGACGCGCCCTTCGTCCGCTGGCGCCTAACTGACCGCGCCAACTTTAAAGACGCGTAGCTCAAAAACTACAGTAGCTAGAAAAAAGTTGTCAACTACAAAAATGAAACTCTAGTTTAAATCAGTTGATACATAAATTTTCAGACAATTTCAGCTTTTGCTGAAATCGTTATAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25045</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>199489</contig_pos>
        <strand></strand>
        <context>actctagttt[A/T]aatcagttga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTACAGTAGCTAGAAAAAAGTTGTCAACTACAAAAATGAAACTCTAGTTT</left_flank>
        <right_flank>AATCAGTTGATACATAAATTTTCAGACAATTTCAGCTTTTGCTGAAATCG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATTTGAATTAGTAAATAATTCTAGCTTTAAATGATATTTTGGCATGAAGTAATTGCGAAAATTGAACGTGGAAGTCTTAAAGGTGGGGGGTTTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGGAGGCAAGGATTGAGGGTGTGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAAAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACATCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAACTTTACAAAATACCAAAAAATTCGTCAAAAACCCATTGAAGTTGACGCGCCCTTCGTCCGCTGGCGCCTAACTGACCGCGCCAACTTTAAAGACGCGTAGCTCAAAAACTACAGTAGCTAGAAAAAAGTTGTCAACTACAAAAATGAAACTCTAGTTTAAATCAGTTGATACATAAATTTTCAGACAATTTCAGCTTTTGCTGAAATCGTTATAAAGTTCTGAAAATCCTAAACCCGGGATAATCGAATTCTTGAGAAACAAAAAAAACGCGCGTGGGAAAAACGAAAAAACGCGAGCAATGAGCTTTTCAGAGAAAGTAGATCAAGAGATCTTTATAATGAGAGAGTCTAGAGAAATCAGAGGAAAAAGGAAAATTGAAAAGAAAAGAATGTATTCTATTGGGATTAAACGGATTATTATTGTTATTTTCCTGATTATAGGTGAATAGAAATAATATAAAATGAGTATTTTTCATTTGAAAATCTTTTATTCGGAGGTTAGAGAGATTTGTATACAGTGGTGACTTCTAGAAGTTTCTGGAAAAAATTTTTCAAATAAAACTTTTGTTTGAAAAAATTATTAAGATGTAGGTAGAACATTATTATTTAAAAATTGATAAAAATTGTAGAACATTATCCGTTAACCGTATTCACTTGGC</canonical>
            <polymorphic>ATATTTGAATTAGTAAATAATTCTAGCTTTAAATGATATTTTGGCATGAAGTAATTGCGAAAATTGAACGTGGAAGTCTTAAAGGTGGGGGGTTTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGGAGGCAAGGATTGAGGGTGTGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAAAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACATCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAACTTTACAAAATACCAAAAAATTCGTCAAAAACCCATTGAAGTTGACGCGCCCTTCGTCCGCTGGCGCCTAACTGACCGCGCCAACTTTAAAGACGCGTAGCTCAAAAACTACAGTAGCTAGAAAAAAGTTGTCAACTACAAAAATGAAACTCTAGTTTWAATCAGTTGATACATAAATTTTCAGACAATTTCAGCTTTTGCTGAAATCGTTATAAAGTTCTGAAAATCCTAAACCCGGGATAATCGAATTCTTGAGAAACAAAAAAAACGCGCGTGGGAAAAACGAAAAAACGCGAGCAATGAGCTTTTCAGAGAAAGTAGATCAAGAGATCTTTATAATGAGAGAGTCTAGAGAAATCAGAGGAAAAAGGAAAATTGAAAAGAAAAGAATGTATTCTATTGGGATTAAACGGATTATTATTGTTATTTTCCTGATTATAGGTGAATAGAAATAATATAAAATGAGTATTTTTCATTTGAAAATCTTTTATTCGGAGGTTAGAGAGATTTGTATACAGTGGTGACTTCTAGAAGTTTCTGGAAAAAATTTTTCAAATAAAACTTTTGTTTGAAAAAATTATTAAGATGTAGGTAGAACATTATTATTTAAAAATTGATAAAAATTGTAGAACATTATCCGTTAACCGTATTCACTTGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>450 307 92 70 51 30</canonical_bands>
                <polymorphic_bands>520 307 92 51 30</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>257 249 175 92 70 50 34 29 26 18</canonical_bands>
                <polymorphic_bands>319 257 175 92 50 34 29 26 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACTACGAAAAATCTCCTGTC</pcr_primer_p1>
		<pcr_primer_p2>CTTTATAACGATTTCAGCAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>AAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAACTTTACAAAATACCAAAAAATTCGTCAAAAACCCATTGAAGTTGACGCGCCCTTCGTCCGCTGGCGCCTAACTGACCGCGCCAACTTTAAAGACGCGTAGCTCAAAAACTACAGTAGCTAGAAAAAAGTTGTCAACTACAAAAATGAAACTCTAGTTTAAATCAGTTGATACATAAATTTTCAGACAATTTCAGCTTTTGCTGAAATCGTTATAAAG</canonical_amplicon>
		<polymorphic_amplicon>AAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAACTTTACAAAATACCAAAAAATTCGTCAAAAACCCATTGAAGTTGACGCGCCCTTCGTCCGCTGGCGCCTAACTGACCGCGCCAACTTTAAAGACGCGTAGCTCAAAAACTACAGTAGCTAGAAAAAAGTTGTCAACTACAAAAATGAAACTCTAGTTTWAATCAGTTGATACATAAATTTTCAGACAATTTCAGCTTTTGCTGAAATCGTTATAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25046</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>199704</contig_pos>
        <strand></strand>
        <context>GAAAAAGGAA[A/C]ATTGAAAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAAGAGATCTTTATAATGAGAGAGTCTAGAGAAATCAGAGGAAAAAGGAA</left_flank>
        <right_flank>ATTGAAAAGAAAAGAATGTATTCTATTGGGATTAAACGGATTATTATTGT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATACATAAAGGCGAGGACGACATCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAACTTTACAAAATACCAAAAAATTCGTCAAAAACCCATTGAAGTTGACGCGCCCTTCGTCCGCTGGCGCCTAACTGACCGCGCCAACTTTAAAGACGCGTAGCTCAAAAACTACAGTAGCTAGAAAAAAGTTGTCAACTACAAAAATGAAACTCTAGTTTAAATCAGTTGATACATAAATTTTCAGACAATTTCAGCTTTTGCTGAAATCGTTATAAAGTTCTGAAAATCCTAAACCCGGGATAATCGAATTCTTGAGAAACAAAAAAAACGCGCGTGGGAAAAACGAAAAAACGCGAGCAATGAGCTTTTCAGAGAAAGTAGATCAAGAGATCTTTATAATGAGAGAGTCTAGAGAAATCAGAGGAAAAAGGAAAATTGAAAAGAAAAGAATGTATTCTATTGGGATTAAACGGATTATTATTGTTATTTTCCTGATTATAGGTGAATAGAAATAATATAAAATGAGTATTTTTCATTTGAAAATCTTTTATTCGGAGGTTAGAGAGATTTGTATACAGTGGTGACTTCTAGAAGTTTCTGGAAAAAATTTTTCAAATAAAACTTTTGTTTGAAAAAATTATTAAGATGTAGGTAGAACATTATTATTTAAAAATTGATAAAAATTGTAGAACATTATCCGTTAACCGTATTCACTTGGCATCGAAAGTTGATAATTCCAGTGCTGAAAATTTTATTTATTTTTTCAATACAATACACAATCCACAGAAACTATTAGTTTAATAAAGAATTTATATTGTTTATTACCTGTTTAATGATGAACTGTCAAGAAAGCGCTATTATTTTTGACGGCCCGTCTTCGAGGCGCAAATCTATGCAGACGGACCGTCGGCGGCGCGCAATTCGACTGCCGACT</canonical>
            <polymorphic>CATACATAAAGGCGAGGACGACATCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAACTTTACAAAATACCAAAAAATTCGTCAAAAACCCATTGAAGTTGACGCGCCCTTCGTCCGCTGGCGCCTAACTGACCGCGCCAACTTTAAAGACGCGTAGCTCAAAAACTACAGTAGCTAGAAAAAAGTTGTCAACTACAAAAATGAAACTCTAGTTTAAATCAGTTGATACATAAATTTTCAGACAATTTCAGCTTTTGCTGAAATCGTTATAAAGTTCTGAAAATCCTAAACCCGGGATAATCGAATTCTTGAGAAACAAAAAAAACGCGCGTGGGAAAAACGAAAAAACGCGAGCAATGAGCTTTTCAGAGAAAGTAGATCAAGAGATCTTTATAATGAGAGAGTCTAGAGAAATCAGAGGAAAAAGGAAMATTGAAAAGAAAAGAATGTATTCTATTGGGATTAAACGGATTATTATTGTTATTTTCCTGATTATAGGTGAATAGAAATAATATAAAATGAGTATTTTTCATTTGAAAATCTTTTATTCGGAGGTTAGAGAGATTTGTATACAGTGGTGACTTCTAGAAGTTTCTGGAAAAAATTTTTCAAATAAAACTTTTGTTTGAAAAAATTATTAAGATGTAGGTAGAACATTATTATTTAAAAATTGATAAAAATTGTAGAACATTATCCGTTAACCGTATTCACTTGGCATCGAAAGTTGATAATTCCAGTGCTGAAAATTTTATTTATTTTTTCAATACAATACACAATCCACAGAAACTATTAGTTTAATAAAGAATTTATATTGTTTATTACCTGTTTAATGATGAACTGTCAAGAAAGCGCTATTATTTTTGACGGCCCGTCTTCGAGGCGCAAATCTATGCAGACGGACCGTCGGCGGCGCGCAATTCGACTGCCGACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>172 157 144 127 112 60 59 51 36 30 16 15 11 10</canonical_bands>
                <polymorphic_bands>299 157 144 112 60 59 51 36 30 16 15 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAATCGTTATAAAGTTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TCACCTATAATCAGGAAAATAACA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TGAAATCGTTATAAAGTTCTGAAAATCCTAAACCCGGGATAATCGAATTCTTGAGAAACAAAAAAAACGCGCGTGGGAAAAACGAAAAAACGCGAGCAATGAGCTTTTCAGAGAAAGTAGATCAAGAGATCTTTATAATGAGAGAGTCTAGAGAAATCAGAGGAAAAAGGAAAATTGAAAAGAAAAGAATGTATTCTATTGGGATTAAACGGATTATTATTGTTATTTTCCTGATTATAGGTGA</canonical_amplicon>
		<polymorphic_amplicon>TGAAATCGTTATAAAGTTCTGAAAATCCTAAACCCGGGATAATCGAATTCTTGAGAAACAAAAAAAACGCGCGTGGGAAAAACGAAAAAACGCGAGCAATGAGCTTTTCAGAGAAAGTAGATCAAGAGATCTTTATAATGAGAGAGTCTAGAGAAATCAGAGGAAAAAGGAAMATTGAAAAGAAAAGAATGTATTCTATTGGGATTAAACGGATTATTATTGTTATTTTCCTGATTATAGGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25047</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>199730</contig_pos>
        <strand></strand>
        <context>ATGTATTCTA[T/A]TGGGATTARA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TAGAGAAATCAGAGGAAAAAGGAAAATTGAAAAGAAAAGAATGTATTCTA</left_flank>
        <right_flank>TGGGATTAAACGGATTATTATTGTTATTTTCCTGATTATAGGTGAATAGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAACTTTACAAAATACCAAAAAATTCGTCAAAAACCCATTGAAGTTGACGCGCCCTTCGTCCGCTGGCGCCTAACTGACCGCGCCAACTTTAAAGACGCGTAGCTCAAAAACTACAGTAGCTAGAAAAAAGTTGTCAACTACAAAAATGAAACTCTAGTTTAAATCAGTTGATACATAAATTTTCAGACAATTTCAGCTTTTGCTGAAATCGTTATAAAGTTCTGAAAATCCTAAACCCGGGATAATCGAATTCTTGAGAAACAAAAAAAACGCGCGTGGGAAAAACGAAAAAACGCGAGCAATGAGCTTTTCAGAGAAAGTAGATCAAGAGATCTTTATAATGAGAGAGTCTAGAGAAATCAGAGGAAAAAGGAAAATTGAAAAGAAAAGAATGTATTCTATTGGGATTAAACGGATTATTATTGTTATTTTCCTGATTATAGGTGAATAGAAATAATATAAAATGAGTATTTTTCATTTGAAAATCTTTTATTCGGAGGTTAGAGAGATTTGTATACAGTGGTGACTTCTAGAAGTTTCTGGAAAAAATTTTTCAAATAAAACTTTTGTTTGAAAAAATTATTAAGATGTAGGTAGAACATTATTATTTAAAAATTGATAAAAATTGTAGAACATTATCCGTTAACCGTATTCACTTGGCATCGAAAGTTGATAATTCCAGTGCTGAAAATTTTATTTATTTTTTCAATACAATACACAATCCACAGAAACTATTAGTTTAATAAAGAATTTATATTGTTTATTACCTGTTTAATGATGAACTGTCAAGAAAGCGCTATTATTTTTGACGGCCCGTCTTCGAGGCGCAAATCTATGCAGACGGACCGTCGGCGGCGCGCAATTCGACTGCCGACTGTTCGCTTTTCGGTAGTCCGCGCCCG</canonical>
            <polymorphic>GTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAACTTTACAAAATACCAAAAAATTCGTCAAAAACCCATTGAAGTTGACGCGCCCTTCGTCCGCTGGCGCCTAACTGACCGCGCCAACTTTAAAGACGCGTAGCTCAAAAACTACAGTAGCTAGAAAAAAGTTGTCAACTACAAAAATGAAACTCTAGTTTAAATCAGTTGATACATAAATTTTCAGACAATTTCAGCTTTTGCTGAAATCGTTATAAAGTTCTGAAAATCCTAAACCCGGGATAATCGAATTCTTGAGAAACAAAAAAAACGCGCGTGGGAAAAACGAAAAAACGCGAGCAATGAGCTTTTCAGAGAAAGTAGATCAAGAGATCTTTATAATGAGAGAGTCTAGAGAAATCAGAGGAAAAAGGAAAATTGAAAAGAAAAGAATGTATTCTAWTGGGATTAAACGGATTATTATTGTTATTTTCCTGATTATAGGTGAATAGAAATAATATAAAATGAGTATTTTTCATTTGAAAATCTTTTATTCGGAGGTTAGAGAGATTTGTATACAGTGGTGACTTCTAGAAGTTTCTGGAAAAAATTTTTCAAATAAAACTTTTGTTTGAAAAAATTATTAAGATGTAGGTAGAACATTATTATTTAAAAATTGATAAAAATTGTAGAACATTATCCGTTAACCGTATTCACTTGGCATCGAAAGTTGATAATTCCAGTGCTGAAAATTTTATTTATTTTTTCAATACAATACACAATCCACAGAAACTATTAGTTTAATAAAGAATTTATATTGTTTATTACCTGTTTAATGATGAACTGTCAAGAAAGCGCTATTATTTTTGACGGCCCGTCTTCGAGGCGCAAATCTATGCAGACGGACCGTCGGCGGCGCGCAATTCGACTGCCGACTGTTCGCTTTTCGGTAGTCCGCGCCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATGAGCTTTTCAGAGAAAGTA</pcr_primer_p1>
		<pcr_primer_p2>AGAAGTCACCACTGTATACAAATCT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>CAATGAGCTTTTCAGAGAAAGTAGATCAAGAGATCTTTATAATGAGAGAGTCTAGAGAAATCAGAGGAAAAAGGAAAATTGAAAAGAAAAGAATGTATTCTATTGGGATTAAACGGATTATTATTGTTATTTTCCTGATTATAGGTGAATAGAAATAATATAAAATGAGTATTTTTCATTTGAAAATCTTTTATTCGGAGGTTAGAGAGATTTGTATACAGTGGTGACTTCT</canonical_amplicon>
		<polymorphic_amplicon>CAATGAGCTTTTCAGAGAAAGTAGATCAAGAGATCTTTATAATGAGAGAGTCTAGAGAAATCAGAGGAAAAAGGAAAATTGAAAAGAAAAGAATGTATTCTAWTGGGATTAAACGGATTATTATTGTTATTTTCCTGATTATAGGTGAATAGAAATAATATAAAATGAGTATTTTTCATTTGAAAATCTTTTATTCGGAGGTTAGAGAGATTTGTATACAGTGGTGACTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25048</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>199739</contig_pos>
        <strand></strand>
        <context>AWTGGGATTA[A/G]ACGGATTATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGAGGAAAAAGGAAAATTGAAAAGAAAAGAATGTATTCTATTGGGATTA</left_flank>
        <right_flank>ACGGATTATTATTGTTATTTTCCTGATTATAGGTGAATAGAAATAATATA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAACTTTACAAAATACCAAAAAATTCGTCAAAAACCCATTGAAGTTGACGCGCCCTTCGTCCGCTGGCGCCTAACTGACCGCGCCAACTTTAAAGACGCGTAGCTCAAAAACTACAGTAGCTAGAAAAAAGTTGTCAACTACAAAAATGAAACTCTAGTTTAAATCAGTTGATACATAAATTTTCAGACAATTTCAGCTTTTGCTGAAATCGTTATAAAGTTCTGAAAATCCTAAACCCGGGATAATCGAATTCTTGAGAAACAAAAAAAACGCGCGTGGGAAAAACGAAAAAACGCGAGCAATGAGCTTTTCAGAGAAAGTAGATCAAGAGATCTTTATAATGAGAGAGTCTAGAGAAATCAGAGGAAAAAGGAAAATTGAAAAGAAAAGAATGTATTCTATTGGGATTAAACGGATTATTATTGTTATTTTCCTGATTATAGGTGAATAGAAATAATATAAAATGAGTATTTTTCATTTGAAAATCTTTTATTCGGAGGTTAGAGAGATTTGTATACAGTGGTGACTTCTAGAAGTTTCTGGAAAAAATTTTTCAAATAAAACTTTTGTTTGAAAAAATTATTAAGATGTAGGTAGAACATTATTATTTAAAAATTGATAAAAATTGTAGAACATTATCCGTTAACCGTATTCACTTGGCATCGAAAGTTGATAATTCCAGTGCTGAAAATTTTATTTATTTTTTCAATACAATACACAATCCACAGAAACTATTAGTTTAATAAAGAATTTATATTGTTTATTACCTGTTTAATGATGAACTGTCAAGAAAGCGCTATTATTTTTGACGGCCCGTCTTCGAGGCGCAAATCTATGCAGACGGACCGTCGGCGGCGCGCAATTCGACTGCCGACTGTTCGCTTTTCGGTAGTCCGCGCCCGGCGGTCCCC</canonical>
            <polymorphic>GTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAACTTTACAAAATACCAAAAAATTCGTCAAAAACCCATTGAAGTTGACGCGCCCTTCGTCCGCTGGCGCCTAACTGACCGCGCCAACTTTAAAGACGCGTAGCTCAAAAACTACAGTAGCTAGAAAAAAGTTGTCAACTACAAAAATGAAACTCTAGTTTAAATCAGTTGATACATAAATTTTCAGACAATTTCAGCTTTTGCTGAAATCGTTATAAAGTTCTGAAAATCCTAAACCCGGGATAATCGAATTCTTGAGAAACAAAAAAAACGCGCGTGGGAAAAACGAAAAAACGCGAGCAATGAGCTTTTCAGAGAAAGTAGATCAAGAGATCTTTATAATGAGAGAGTCTAGAGAAATCAGAGGAAAAAGGAAAATTGAAAAGAAAAGAATGTATTCTATTGGGATTARACGGATTATTATTGTTATTTTCCTGATTATAGGTGAATAGAAATAATATAAAATGAGTATTTTTCATTTGAAAATCTTTTATTCGGAGGTTAGAGAGATTTGTATACAGTGGTGACTTCTAGAAGTTTCTGGAAAAAATTTTTCAAATAAAACTTTTGTTTGAAAAAATTATTAAGATGTAGGTAGAACATTATTATTTAAAAATTGATAAAAATTGTAGAACATTATCCGTTAACCGTATTCACTTGGCATCGAAAGTTGATAATTCCAGTGCTGAAAATTTTATTTATTTTTTCAATACAATACACAATCCACAGAAACTATTAGTTTAATAAAGAATTTATATTGTTTATTACCTGTTTAATGATGAACTGTCAAGAAAGCGCTATTATTTTTGACGGCCCGTCTTCGAGGCGCAAATCTATGCAGACGGACCGTCGGCGGCGCGCAATTCGACTGCCGACTGTTCGCTTTTCGGTAGTCCGCGCCCGGCGGTCCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>249 175 139 97 92 86 70 34 32 26</canonical_bands>
                <polymorphic_bands>424 139 97 92 86 70 34 32 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATGAGCTTTTCAGAGAAAGTA</pcr_primer_p1>
		<pcr_primer_p2>AGAAGTCACCACTGTATACAAATCT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>CAATGAGCTTTTCAGAGAAAGTAGATCAAGAGATCTTTATAATGAGAGAGTCTAGAGAAATCAGAGGAAAAAGGAAAATTGAAAAGAAAAGAATGTATTCTATTGGGATTAAACGGATTATTATTGTTATTTTCCTGATTATAGGTGAATAGAAATAATATAAAATGAGTATTTTTCATTTGAAAATCTTTTATTCGGAGGTTAGAGAGATTTGTATACAGTGGTGACTTCT</canonical_amplicon>
		<polymorphic_amplicon>CAATGAGCTTTTCAGAGAAAGTAGATCAAGAGATCTTTATAATGAGAGAGTCTAGAGAAATCAGAGGAAAAAGGAAAATTGAAAAGAAAAGAATGTATTCTATTGGGATTARACGGATTATTATTGTTATTTTCCTGATTATAGGTGAATAGAAATAATATAAAATGAGTATTTTTCATTTGAAAATCTTTTATTCGGAGGTTAGAGAGATTTGTATACAGTGGTGACTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25049</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>203645</contig_pos>
        <strand>+</strand>
        <context>GAGTGATATC[A/C]GCGCTGAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATTTTAATTATGGACAACCACTGAAGTCACAATACAGTCGAGTGATATC</left_flank>
        <right_flank>GCGCTGAAATTAAAGAAATATTATAATTTTCAAAATGAAAAGTGTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCGCCAACTTTAAAGGCGCATAGCTCAAAATCTACGATAGCTAGAAAAATGAATTAATAAAAAAAACAAAGCACTAGTACCAAGCCTCATTTTTGCAGTTGACAACTTTTTTCTAATTGTCGTAGTTTTCGAGCTATGCACCTTTAAAGTTGGCGCGCCCTTCGTCCGCCGACGATTAATAGGGCGTGTAAACTTTAAAGACGCATATCTCAAAAACCGGAAAAGCTAGAAAAAAGTTATCAACTACAAAAATGAAGCTCTAGTTTTGTTTGCTAAAGTCTAAAAGTTTCAGACGTTTTCAGGAATGTTCGAATTACTCAAATTTGGAAAAAAAATGGGGCAAAAAAATTCAAAAATCAAAAAGTTTATTATAGAAAAGTTTTTACAAAGAGAAGAAAAAAAAAGAACAACACAACTGAATTGAGATGAATTTAAAAAAATATATAATTATTTTAATTATGGACAACCACTGAAGTCACAATACAGTCGAGTGATATCCGCGCTGAAATTAAAGAAATATTATAATTTTCAAAATGAAAAGTGTTTTTTTTTCTAAAATTTTCTTTGTCAACTCACAAAAATACAGAAGCGTATTTTTCATTTTCCTGACAAGCCAATTCCCAAGTTAGCTTGTTAACATTAGTTTGAGTGTCCAGAGTCTCAGTACTTCCCGGAAGGTCGGCCTGGAAATTAAAAAAAAATAAAATTAATTTTAAAAATATTGTAAACTCACTCTAAGCACAATCGAAGCACAAGATCCCATGTTATCCGTTTCACATGTTATTGTTGTGATTTTGCAAAGATCTTCTCTGTCTCTGGAATTTCAGAAAAATTCAAATTTCAAAAAAATTGCTTTCCAGAATTTTCTCAAAAAGCTCACATATAACTGAAAGTGGTACCTCCTGGCATTGTTGGTTTGATTGCTTCAATGTCACAGTTGAAACAAGCTTAAAAATCAAACTTTGGAAAATTTAAAAATTTCACTTTTTTGATCCCAAA</canonical>
            <polymorphic>CGCGCCAACTTTAAAGGCGCATAGCTCAAAATCTACGATAGCTAGAAAAATGAATTAATAAAAAAAACAAAGCACTAGTACCAAGCCTCATTTTTGCAGTTGACAACTTTTTTCTAATTGTCGTAGTTTTCGAGCTATGCACCTTTAAAGTTGGCGCGCCCTTCGTCCGCCGACGATTAATAGGGCGTGTAAACTTTAAAGACGCATATCTCAAAAACCGGAAAAGCTAGAAAAAAGTTATCAACTACAAAAATGAAGCTCTAGTTTTGTTTGCTAAAGTCTAAAAGTTTCAGACGTTTTCAGGAATGTTCGAATTACTCAAATTTGGAAAAAAAATGGGGCAAAAAAATTCAAAAATCAAAAAGTTTATTATAGAAAAGTTTTTACAAAGAGAAGAAAAAAAAAGAACAACACAACTGAATTGAGATGAATTTAAAAAAATATATAATTATTTTAATTATGGACAACCACTGAAGTCACAATACAGTCGAGTGATATCMGCGCTGAAATTAAAGAAATATTATAATTTTCAAAATGAAAAGTGTTTTTTTTTCTAAAATTTTCTTTGTCAACTCACAAAAATACAGAAGCGTATTTTTCATTTTCCTGACAAGCCAATTCCCAAGTTAGCTTGTTAACATTAGTTTGAGTGTCCAGAGTCTCAGTACTTCCCGGAAGGTCGGCCTGGAAATTAAAAAAAAATAAAATTAATTTTAAAAATATTGTAAACTCACTCTAAGCACAATCGAAGCACAAGATCCCATGTTATCCGTTTCACATGTTATTGTTGTGATTTTGCAAAGATCTTCTCTGTCTCTGGAATTTCAGAAAAATTCAAATTTCAAAAAAATTGCTTTCCAGAATTTTCTCAAAAAGCTCACATATAACTGAAAGTGGTACCTCCTGGCATTGTTGGTTTGATTGCTTCAATGTCACAGTTGAAACAAGCTTAAAAATCAAACTTTGGAAAATTTAAAAATTTCACTTTTTTGATCCCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 345 154 2</canonical_bands>
                <polymorphic_bands>844 154 2</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 332 167</canonical_bands>
                <polymorphic_bands>833 167</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAGTTTTTACAAAGAGAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTGTCAGGAAAATGAAAAATAC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GAAAAGTTTTTACAAAGAGAAGAAAAAAAAAGAACAACACAACTGAATTGAGATGAATTTAAAAAAATATATAATTATTTTAATTATGGACAACCACTGAAGTCACAATACAGTCGAGTGATATCCGCGCTGAAATTAAAGAAATATTATAATTTTCAAAATGAAAAGTGTTTTTTTTTCTAAAATTTTCTTTGTCAACTCACAAAAATACAGAAGCGTATTTTTCATTTTCCTGACAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAAGTTTTTACAAAGAGAAGAAAAAAAAAGAACAACACAACTGAATTGAGATGAATTTAAAAAAATATATAATTATTTTAATTATGGACAACCACTGAAGTCACAATACAGTCGAGTGATATCMGCGCTGAAATTAAAGAAATATTATAATTTTCAAAATGAAAAGTGTTTTTTTTTCTAAAATTTTCTTTGTCAACTCACAAAAATACAGAAGCGTATTTTTCATTTTCCTGACAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25050</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>203686</contig_pos>
        <strand>+</strand>
        <context>CAAAATGAAA[A/G]GTGTTTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTGATATCCGCGCTGAAATTAAAGAAATATTATAATTTTCAAAATGAAA</left_flank>
        <right_flank>GTGTTTTTTTTTCTAAAATTTTCTTTGTCAACTCACAAAAATACAGAAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGAAAAATGAATTAATAAAAAAAACAAAGCACTAGTACCAAGCCTCATTTTTGCAGTTGACAACTTTTTTCTAATTGTCGTAGTTTTCGAGCTATGCACCTTTAAAGTTGGCGCGCCCTTCGTCCGCCGACGATTAATAGGGCGTGTAAACTTTAAAGACGCATATCTCAAAAACCGGAAAAGCTAGAAAAAAGTTATCAACTACAAAAATGAAGCTCTAGTTTTGTTTGCTAAAGTCTAAAAGTTTCAGACGTTTTCAGGAATGTTCGAATTACTCAAATTTGGAAAAAAAATGGGGCAAAAAAATTCAAAAATCAAAAAGTTTATTATAGAAAAGTTTTTACAAAGAGAAGAAAAAAAAAGAACAACACAACTGAATTGAGATGAATTTAAAAAAATATATAATTATTTTAATTATGGACAACCACTGAAGTCACAATACAGTCGAGTGATATCCGCGCTGAAATTAAAGAAATATTATAATTTTCAAAATGAAAAGTGTTTTTTTTTCTAAAATTTTCTTTGTCAACTCACAAAAATACAGAAGCGTATTTTTCATTTTCCTGACAAGCCAATTCCCAAGTTAGCTTGTTAACATTAGTTTGAGTGTCCAGAGTCTCAGTACTTCCCGGAAGGTCGGCCTGGAAATTAAAAAAAAATAAAATTAATTTTAAAAATATTGTAAACTCACTCTAAGCACAATCGAAGCACAAGATCCCATGTTATCCGTTTCACATGTTATTGTTGTGATTTTGCAAAGATCTTCTCTGTCTCTGGAATTTCAGAAAAATTCAAATTTCAAAAAAATTGCTTTCCAGAATTTTCTCAAAAAGCTCACATATAACTGAAAGTGGTACCTCCTGGCATTGTTGGTTTGATTGCTTCAATGTCACAGTTGAAACAAGCTTAAAAATCAAACTTTGGAAAATTTAAAAATTTCACTTTTTTGATCCCAAAATTTATTTAAGAGCCCAATTTCTAAAACTCTGAAAACTGTT</canonical>
            <polymorphic>CTAGAAAAATGAATTAATAAAAAAAACAAAGCACTAGTACCAAGCCTCATTTTTGCAGTTGACAACTTTTTTCTAATTGTCGTAGTTTTCGAGCTATGCACCTTTAAAGTTGGCGCGCCCTTCGTCCGCCGACGATTAATAGGGCGTGTAAACTTTAAAGACGCATATCTCAAAAACCGGAAAAGCTAGAAAAAAGTTATCAACTACAAAAATGAAGCTCTAGTTTTGTTTGCTAAAGTCTAAAAGTTTCAGACGTTTTCAGGAATGTTCGAATTACTCAAATTTGGAAAAAAAATGGGGCAAAAAAATTCAAAAATCAAAAAGTTTATTATAGAAAAGTTTTTACAAAGAGAAGAAAAAAAAAGAACAACACAACTGAATTGAGATGAATTTAAAAAAATATATAATTATTTTAATTATGGACAACCACTGAAGTCACAATACAGTCGAGTGATATCCGCGCTGAAATTAAAGAAATATTATAATTTTCAAAATGAAARGTGTTTTTTTTTCTAAAATTTTCTTTGTCAACTCACAAAAATACAGAAGCGTATTTTTCATTTTCCTGACAAGCCAATTCCCAAGTTAGCTTGTTAACATTAGTTTGAGTGTCCAGAGTCTCAGTACTTCCCGGAAGGTCGGCCTGGAAATTAAAAAAAAATAAAATTAATTTTAAAAATATTGTAAACTCACTCTAAGCACAATCGAAGCACAAGATCCCATGTTATCCGTTTCACATGTTATTGTTGTGATTTTGCAAAGATCTTCTCTGTCTCTGGAATTTCAGAAAAATTCAAATTTCAAAAAAATTGCTTTCCAGAATTTTCTCAAAAAGCTCACATATAACTGAAAGTGGTACCTCCTGGCATTGTTGGTTTGATTGCTTCAATGTCACAGTTGAAACAAGCTTAAAAATCAAACTTTGGAAAATTTAAAAATTTCACTTTTTTGATCCCAAAATTTATTTAAGAGCCCAATTTCTAAAACTCTGAAAACTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAGTTTTTACAAAGAGAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTGTCAGGAAAATGAAAAATAC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GAAAAGTTTTTACAAAGAGAAGAAAAAAAAAGAACAACACAACTGAATTGAGATGAATTTAAAAAAATATATAATTATTTTAATTATGGACAACCACTGAAGTCACAATACAGTCGAGTGATATCCGCGCTGAAATTAAAGAAATATTATAATTTTCAAAATGAAAAGTGTTTTTTTTTCTAAAATTTTCTTTGTCAACTCACAAAAATACAGAAGCGTATTTTTCATTTTCCTGACAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAAGTTTTTACAAAGAGAAGAAAAAAAAAGAACAACACAACTGAATTGAGATGAATTTAAAAAAATATATAATTATTTTAATTATGGACAACCACTGAAGTCACAATACAGTCGAGTGATATCCGCGCTGAAATTAAAGAAATATTATAATTTTCAAAATGAAARGTGTTTTTTTTTCTAAAATTTTCTTTGTCAACTCACAAAAATACAGAAGCGTATTTTTCATTTTCCTGACAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25051</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>203839</contig_pos>
        <strand>+</strand>
        <context>CCTGGaaatt[A/T]aaaaaaaawa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTTGAGTGTCCAGAGTCTCAGTACTTCCCGGAAGGTCGGCCTGGAAATT</left_flank>
        <right_flank>AAAAAAAATAAAATTAATTTTAAAAATATTGTAAACTCACTCTAAGCACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAAAGACGCATATCTCAAAAACCGGAAAAGCTAGAAAAAAGTTATCAACTACAAAAATGAAGCTCTAGTTTTGTTTGCTAAAGTCTAAAAGTTTCAGACGTTTTCAGGAATGTTCGAATTACTCAAATTTGGAAAAAAAATGGGGCAAAAAAATTCAAAAATCAAAAAGTTTATTATAGAAAAGTTTTTACAAAGAGAAGAAAAAAAAAGAACAACACAACTGAATTGAGATGAATTTAAAAAAATATATAATTATTTTAATTATGGACAACCACTGAAGTCACAATACAGTCGAGTGATATCCGCGCTGAAATTAAAGAAATATTATAATTTTCAAAATGAAAAGTGTTTTTTTTTCTAAAATTTTCTTTGTCAACTCACAAAAATACAGAAGCGTATTTTTCATTTTCCTGACAAGCCAATTCCCAAGTTAGCTTGTTAACATTAGTTTGAGTGTCCAGAGTCTCAGTACTTCCCGGAAGGTCGGCCTGGAAATTAAAAAAAAATAAAATTAATTTTAAAAATATTGTAAACTCACTCTAAGCACAATCGAAGCACAAGATCCCATGTTATCCGTTTCACATGTTATTGTTGTGATTTTGCAAAGATCTTCTCTGTCTCTGGAATTTCAGAAAAATTCAAATTTCAAAAAAATTGCTTTCCAGAATTTTCTCAAAAAGCTCACATATAACTGAAAGTGGTACCTCCTGGCATTGTTGGTTTGATTGCTTCAATGTCACAGTTGAAACAAGCTTAAAAATCAAACTTTGGAAAATTTAAAAATTTCACTTTTTTGATCCCAAAATTTATTTAAGAGCCCAATTTCTAAAACTCTGAAAACTGTTTTTTGGAAATTGCAGCTAGTTTTAAACAAAAAAAAGTTGGGTTAAAATCAACAAGGGCTTCATGTTTGCAGTTGTCAACTTTTCTCTAGATACTGTAGTTTTTGAGGTATGCGCCTTTGAAGTTGACGCGCCCGTCGTCATTCCCCTGGGGCG</canonical>
            <polymorphic>TTTAAAGACGCATATCTCAAAAACCGGAAAAGCTAGAAAAAAGTTATCAACTACAAAAATGAAGCTCTAGTTTTGTTTGCTAAAGTCTAAAAGTTTCAGACGTTTTCAGGAATGTTCGAATTACTCAAATTTGGAAAAAAAATGGGGCAAAAAAATTCAAAAATCAAAAAGTTTATTATAGAAAAGTTTTTACAAAGAGAAGAAAAAAAAAGAACAACACAACTGAATTGAGATGAATTTAAAAAAATATATAATTATTTTAATTATGGACAACCACTGAAGTCACAATACAGTCGAGTGATATCCGCGCTGAAATTAAAGAAATATTATAATTTTCAAAATGAAAAGTGTTTTTTTTTCTAAAATTTTCTTTGTCAACTCACAAAAATACAGAAGCGTATTTTTCATTTTCCTGACAAGCCAATTCCCAAGTTAGCTTGTTAACATTAGTTTGAGTGTCCAGAGTCTCAGTACTTCCCGGAAGGTCGGCCTGGAAATTWAAAAAAAATAAAATTAATTTTAAAAATATTGTAAACTCACTCTAAGCACAATCGAAGCACAAGATCCCATGTTATCCGTTTCACATGTTATTGTTGTGATTTTGCAAAGATCTTCTCTGTCTCTGGAATTTCAGAAAAATTCAAATTTCAAAAAAATTGCTTTCCAGAATTTTCTCAAAAAGCTCACATATAACTGAAAGTGGTACCTCCTGGCATTGTTGGTTTGATTGCTTCAATGTCACAGTTGAAACAAGCTTAAAAATCAAACTTTGGAAAATTTAAAAATTTCACTTTTTTGATCCCAAAATTTATTTAAGAGCCCAATTTCTAAAACTCTGAAAACTGTTTTTTGGAAATTGCAGCTAGTTTTAAACAAAAAAAAGTTGGGTTAAAATCAACAAGGGCTTCATGTTTGCAGTTGTCAACTTTTCTCTAGATACTGTAGTTTTTGAGGTATGCGCCTTTGAAGTTGACGCGCCCGTCGTCATTCCCCTGGGGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>237 236 125 111 57 56 56 34 23 21 20 16 6 2</canonical_bands>
                <polymorphic_bands>237 236 125 111 73 56 56 34 23 21 20 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACAGAAGCGTATTTTTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCCAGAGACAGAGAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TACAGAAGCGTATTTTTCATTTTCCTGACAAGCCAATTCCCAAGTTAGCTTGTTAACATTAGTTTGAGTGTCCAGAGTCTCAGTACTTCCCGGAAGGTCGGCCTGGAAATTAAAAAAAAATAAAATTAATTTTAAAAATATTGTAAACTCACTCTAAGCACAATCGAAGCACAAGATCCCATGTTATCCGTTTCACATGTTATTGTTGTGATTTTGCAAAGATCTTCTCTGTCTCTGGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>TACAGAAGCGTATTTTTCATTTTCCTGACAAGCCAATTCCCAAGTTAGCTTGTTAACATTAGTTTGAGTGTCCAGAGTCTCAGTACTTCCCGGAAGGTCGGCCTGGAAATTWAAAAAAAATAAAATTAATTTTAAAAATATTGTAAACTCACTCTAAGCACAATCGAAGCACAAGATCCCATGTTATCCGTTTCACATGTTATTGTTGTGATTTTGCAAAGATCTTCTCTGTCTCTGGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25052</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>203848</contig_pos>
        <strand></strand>
        <context>twaaaaaaaa[T/A]aaaattaatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCCAGAGTCTCAGTACTTCCCGGAAGGTCGGCCTGGAAATTAAAAAAAAA</left_flank>
        <right_flank>AAAATTAATTTTAAAAATATTGTAAACTCACTCTAAGCACAATCGAAGCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATATCTCAAAAACCGGAAAAGCTAGAAAAAAGTTATCAACTACAAAAATGAAGCTCTAGTTTTGTTTGCTAAAGTCTAAAAGTTTCAGACGTTTTCAGGAATGTTCGAATTACTCAAATTTGGAAAAAAAATGGGGCAAAAAAATTCAAAAATCAAAAAGTTTATTATAGAAAAGTTTTTACAAAGAGAAGAAAAAAAAAGAACAACACAACTGAATTGAGATGAATTTAAAAAAATATATAATTATTTTAATTATGGACAACCACTGAAGTCACAATACAGTCGAGTGATATCCGCGCTGAAATTAAAGAAATATTATAATTTTCAAAATGAAAAGTGTTTTTTTTTCTAAAATTTTCTTTGTCAACTCACAAAAATACAGAAGCGTATTTTTCATTTTCCTGACAAGCCAATTCCCAAGTTAGCTTGTTAACATTAGTTTGAGTGTCCAGAGTCTCAGTACTTCCCGGAAGGTCGGCCTGGAAATTAAAAAAAAATAAAATTAATTTTAAAAATATTGTAAACTCACTCTAAGCACAATCGAAGCACAAGATCCCATGTTATCCGTTTCACATGTTATTGTTGTGATTTTGCAAAGATCTTCTCTGTCTCTGGAATTTCAGAAAAATTCAAATTTCAAAAAAATTGCTTTCCAGAATTTTCTCAAAAAGCTCACATATAACTGAAAGTGGTACCTCCTGGCATTGTTGGTTTGATTGCTTCAATGTCACAGTTGAAACAAGCTTAAAAATCAAACTTTGGAAAATTTAAAAATTTCACTTTTTTGATCCCAAAATTTATTTAAGAGCCCAATTTCTAAAACTCTGAAAACTGTTTTTTGGAAATTGCAGCTAGTTTTAAACAAAAAAAAGTTGGGTTAAAATCAACAAGGGCTTCATGTTTGCAGTTGTCAACTTTTCTCTAGATACTGTAGTTTTTGAGGTATGCGCCTTTGAAGTTGACGCGCCCGTCGTCATTCCCCTGGGGCGCGTTTACTT</canonical>
            <polymorphic>GCATATCTCAAAAACCGGAAAAGCTAGAAAAAAGTTATCAACTACAAAAATGAAGCTCTAGTTTTGTTTGCTAAAGTCTAAAAGTTTCAGACGTTTTCAGGAATGTTCGAATTACTCAAATTTGGAAAAAAAATGGGGCAAAAAAATTCAAAAATCAAAAAGTTTATTATAGAAAAGTTTTTACAAAGAGAAGAAAAAAAAAGAACAACACAACTGAATTGAGATGAATTTAAAAAAATATATAATTATTTTAATTATGGACAACCACTGAAGTCACAATACAGTCGAGTGATATCCGCGCTGAAATTAAAGAAATATTATAATTTTCAAAATGAAAAGTGTTTTTTTTTCTAAAATTTTCTTTGTCAACTCACAAAAATACAGAAGCGTATTTTTCATTTTCCTGACAAGCCAATTCCCAAGTTAGCTTGTTAACATTAGTTTGAGTGTCCAGAGTCTCAGTACTTCCCGGAAGGTCGGCCTGGAAATTAAAAAAAAAWAAAATTAATTTTAAAAATATTGTAAACTCACTCTAAGCACAATCGAAGCACAAGATCCCATGTTATCCGTTTCACATGTTATTGTTGTGATTTTGCAAAGATCTTCTCTGTCTCTGGAATTTCAGAAAAATTCAAATTTCAAAAAAATTGCTTTCCAGAATTTTCTCAAAAAGCTCACATATAACTGAAAGTGGTACCTCCTGGCATTGTTGGTTTGATTGCTTCAATGTCACAGTTGAAACAAGCTTAAAAATCAAACTTTGGAAAATTTAAAAATTTCACTTTTTTGATCCCAAAATTTATTTAAGAGCCCAATTTCTAAAACTCTGAAAACTGTTTTTTGGAAATTGCAGCTAGTTTTAAACAAAAAAAAGTTGGGTTAAAATCAACAAGGGCTTCATGTTTGCAGTTGTCAACTTTTCTCTAGATACTGTAGTTTTTGAGGTATGCGCCTTTGAAGTTGACGCGCCCGTCGTCATTCCCCTGGGGCGCGTTTACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACAGAAGCGTATTTTTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCCAGAGACAGAGAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TACAGAAGCGTATTTTTCATTTTCCTGACAAGCCAATTCCCAAGTTAGCTTGTTAACATTAGTTTGAGTGTCCAGAGTCTCAGTACTTCCCGGAAGGTCGGCCTGGAAATTAAAAAAAAATAAAATTAATTTTAAAAATATTGTAAACTCACTCTAAGCACAATCGAAGCACAAGATCCCATGTTATCCGTTTCACATGTTATTGTTGTGATTTTGCAAAGATCTTCTCTGTCTCTGGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>TACAGAAGCGTATTTTTCATTTTCCTGACAAGCCAATTCCCAAGTTAGCTTGTTAACATTAGTTTGAGTGTCCAGAGTCTCAGTACTTCCCGGAAGGTCGGCCTGGAAATTAAAAAAAAAWAAAATTAATTTTAAAAATATTGTAAACTCACTCTAAGCACAATCGAAGCACAAGATCCCATGTTATCCGTTTCACATGTTATTGTTGTGATTTTGCAAAGATCTTCTCTGTCTCTGGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25053</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>203989</contig_pos>
        <strand></strand>
        <context>TTCAAATTTC[A/C]AAAAAATTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTGCAAAGATCTTCTCTGTCTCTGGAATTTCAGAAAAATTCAAATTTC</left_flank>
        <right_flank>AAAAAATTGCTTTCCAGAATTTTCTCAAAAAGCTCACATATAACTGAAAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATTCAAAAATCAAAAAGTTTATTATAGAAAAGTTTTTACAAAGAGAAGAAAAAAAAAGAACAACACAACTGAATTGAGATGAATTTAAAAAAATATATAATTATTTTAATTATGGACAACCACTGAAGTCACAATACAGTCGAGTGATATCCGCGCTGAAATTAAAGAAATATTATAATTTTCAAAATGAAAAGTGTTTTTTTTTCTAAAATTTTCTTTGTCAACTCACAAAAATACAGAAGCGTATTTTTCATTTTCCTGACAAGCCAATTCCCAAGTTAGCTTGTTAACATTAGTTTGAGTGTCCAGAGTCTCAGTACTTCCCGGAAGGTCGGCCTGGAAATTAAAAAAAAATAAAATTAATTTTAAAAATATTGTAAACTCACTCTAAGCACAATCGAAGCACAAGATCCCATGTTATCCGTTTCACATGTTATTGTTGTGATTTTGCAAAGATCTTCTCTGTCTCTGGAATTTCAGAAAAATTCAAATTTCAAAAAAATTGCTTTCCAGAATTTTCTCAAAAAGCTCACATATAACTGAAAGTGGTACCTCCTGGCATTGTTGGTTTGATTGCTTCAATGTCACAGTTGAAACAAGCTTAAAAATCAAACTTTGGAAAATTTAAAAATTTCACTTTTTTGATCCCAAAATTTATTTAAGAGCCCAATTTCTAAAACTCTGAAAACTGTTTTTTGGAAATTGCAGCTAGTTTTAAACAAAAAAAAGTTGGGTTAAAATCAACAAGGGCTTCATGTTTGCAGTTGTCAACTTTTCTCTAGATACTGTAGTTTTTGAGGTATGCGCCTTTGAAGTTGACGCGCCCGTCGTCATTCCCCTGGGGCGCGTTTACTTTAAAGACGCATAGCTCAAAAACTACTGTAGCTAAAAAAAAGTTGCTAACTAATAAAATGTGTAAAATGTAATTTTACATATTTTCAAAGTTTTCCAGTGTTTTCTATAATATCTCTTGTTTAAAGGCGCATAGCACAAAAA</canonical>
            <polymorphic>AAAAATTCAAAAATCAAAAAGTTTATTATAGAAAAGTTTTTACAAAGAGAAGAAAAAAAAAGAACAACACAACTGAATTGAGATGAATTTAAAAAAATATATAATTATTTTAATTATGGACAACCACTGAAGTCACAATACAGTCGAGTGATATCCGCGCTGAAATTAAAGAAATATTATAATTTTCAAAATGAAAAGTGTTTTTTTTTCTAAAATTTTCTTTGTCAACTCACAAAAATACAGAAGCGTATTTTTCATTTTCCTGACAAGCCAATTCCCAAGTTAGCTTGTTAACATTAGTTTGAGTGTCCAGAGTCTCAGTACTTCCCGGAAGGTCGGCCTGGAAATTAAAAAAAAATAAAATTAATTTTAAAAATATTGTAAACTCACTCTAAGCACAATCGAAGCACAAGATCCCATGTTATCCGTTTCACATGTTATTGTTGTGATTTTGCAAAGATCTTCTCTGTCTCTGGAATTTCAGAAAAATTCAAATTTCMAAAAAATTGCTTTCCAGAATTTTCTCAAAAAGCTCACATATAACTGAAAGTGGTACCTCCTGGCATTGTTGGTTTGATTGCTTCAATGTCACAGTTGAAACAAGCTTAAAAATCAAACTTTGGAAAATTTAAAAATTTCACTTTTTTGATCCCAAAATTTATTTAAGAGCCCAATTTCTAAAACTCTGAAAACTGTTTTTTGGAAATTGCAGCTAGTTTTAAACAAAAAAAAGTTGGGTTAAAATCAACAAGGGCTTCATGTTTGCAGTTGTCAACTTTTCTCTAGATACTGTAGTTTTTGAGGTATGCGCCTTTGAAGTTGACGCGCCCGTCGTCATTCCCCTGGGGCGCGTTTACTTTAAAGACGCATAGCTCAAAAACTACTGTAGCTAAAAAAAAGTTGCTAACTAATAAAATGTGTAAAATGTAATTTTACATATTTTCAAAGTTTTCCAGTGTTTTCTATAATATCTCTTGTTTAAAGGCGCATAGCACAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCACATGTTATTGTTGTGATTTT</pcr_primer_p1>
		<pcr_primer_p2>AGAAATTGGGCTCTTAAATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCACATGTTATTGTTGTGATTTTGCAAAGATCTTCTCTGTCTCTGGAATTTCAGAAAAATTCAAATTTCAAAAAAATTGCTTTCCAGAATTTTCTCAAAAAGCTCACATATAACTGAAAGTGGTACCTCCTGGCATTGTTGGTTTGATTGCTTCAATGTCACAGTTGAAACAAGCTTAAAAATCAAACTTTGGAAAATTTAAAAATTTCACTTTTTTGATCCCAAAATTTATTTAAGAGCCCAATTTCT</canonical_amplicon>
		<polymorphic_amplicon>TCACATGTTATTGTTGTGATTTTGCAAAGATCTTCTCTGTCTCTGGAATTTCAGAAAAATTCAAATTTCMAAAAAATTGCTTTCCAGAATTTTCTCAAAAAGCTCACATATAACTGAAAGTGGTACCTCCTGGCATTGTTGGTTTGATTGCTTCAATGTCACAGTTGAAACAAGCTTAAAAATCAAACTTTGGAAAATTTAAAAATTTCACTTTTTTGATCCCAAAATTTATTTAAGAGCCCAATTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25054</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>206133</contig_pos>
        <strand></strand>
        <context>TTCTGGAGAT[T/C]TTGTGACGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CGTGGACGTCTTCTGAATCATCTGAATCCTCAAAAATGTCTTCTGGAGAT</left_flank>
        <right_flank>TTGTGACGACATCTTCCAGAATTCCAGAACCTCCACCGAAAATTCCAGTG</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGGGTGCGATTCCACTCGGTGGAAAAATCGTTTTGCTTCGTTTTCCAGAGCATTTTCGGAGCGTTTGAGAACATTCTAGATGTCAAAAATCGGAATTTTCAAAAAAAAAAAATTAAAAGATCACAGATTTTCAGAAAACCCAGAAATCCAAATACATAGATTTTCAGACCAAATTTTTTTTTGAGCTACCTTTTTTTTTGATCTACCATCATTATTAAGTTCAATAGTTATTAGTGGAGGTACCTGTTTTTTTTTGATTTTCATCATTTTTGATTTTTAAGTATTTTTAGTTTCAACAATTTCTAAAATTTCCAGAAAATGAGCAATCCACCAATCACAATGTACCAACGACATATTCTAGCTCAACTGATAGAATCTGGACTTTCAAATGATCAAATAATCAATCAATATCGTTTGATCTACGCTCGCAACCAAGAATTTCTGAAGACGTGGACGTCTTCTGAATCATCTGAATCCTCAAAAATGTCTTCTGGAGATTTTGTGACGACATCTTCCAGAATTCCAGAACCTCCACCGAAAATTCCAGTGATTTTCCGGAAAATCGATAATTATGATGAAAATTATGATCCACGAAGACTGGGAATATTGTTGAATTTGAGCAAAAAGAATCTGGGAGAACATGTGAGGAAATGGAAAATTGCTATAAATTTGACAACCGCAGAATTGGCTGGAAGAGTTGGTAGGTTGAACTTTTTCGAATTTTTTCAAATTTTTTTAAAAATTGGATTTTTTGAAATTTTCGATTTTTGACATCTAGAAACTTCTAGAATTGCCTTAAATGCTCTAAAAAAGTAGCAAAACCTTTTGCCGCCAAGAGGAATCGAACCTGGGTCGTCAGATTGGTAGTGGAAATTTCGGAAAATCCCACTGAGCCATTTGTGCATTTTCGGAAAAATCGCTCAAAAACACAAAAAAAAGAAATCTTGAGTGCTAGAAACTATTTTTATCATTTTTTCCGAGAAATTTGAATCTAGAATA</canonical>
            <polymorphic>CCGGGTGCGATTCCACTCGGTGGAAAAATCGTTTTGCTTCGTTTTCCAGAGCATTTTCGGAGCGTTTGAGAACATTCTAGATGTCAAAAATCGGAATTTTCAAAAAAAAAAAATTAAAAGATCACAGATTTTCAGAAAACCCAGAAATCCAAATACATAGATTTTCAGACCAAATTTTTTTTTGAGCTACCTTTTTTTTTGATCTACCATCATTATTAAGTTCAATAGTTATTAGTGGAGGTACCTGTTTTTTTTTGATTTTCATCATTTTTGATTTTTAAGTATTTTTAGTTTCAACAATTTCTAAAATTTCCAGAAAATGAGCAATCCACCAATCACAATGTACCAACGACATATTCTAGCTCAACTGATAGAATCTGGACTTTCAAATGATCAAATAATCAATCAATATCGTTTGATCTACGCTCGCAACCAAGAATTTCTGAAGACGTGGACGTCTTCTGAATCATCTGAATCCTCAAAAATGTCTTCTGGAGATYTTGTGACGACATCTTCCAGAATTCCAGAACCTCCACCGAAAATTCCAGTGATTTTCCGGAAAATCGATAATTATGATGAAAATTATGATCCACGAAGACTGGGAATATTGTTGAATTTGAGCAAAAAGAATCTGGGAGAACATGTGAGGAAATGGAAAATTGCTATAAATTTGACAACCGCAGAATTGGCTGGAAGAGTTGGTAGGTTGAACTTTTTCGAATTTTTTCAAATTTTTTTAAAAATTGGATTTTTTGAAATTTTCGATTTTTGACATCTAGAAACTTCTAGAATTGCCTTAAATGCTCTAAAAAAGTAGCAAAACCTTTTGCCGCCAAGAGGAATCGAACCTGGGTCGTCAGATTGGTAGTGGAAATTTCGGAAAATCCCACTGAGCCATTTGTGCATTTTCGGAAAAATCGCTCAAAAACACAAAAAAAAGAAATCTTGAGTGCTAGAAACTATTTTTATCATTTTTTCCGAGAAATTTGAATCTAGAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGACATATTCTAGCTCAACTGAT</pcr_primer_p1>
		<pcr_primer_p2>GTCTTCGTGGATCATAATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGACATATTCTAGCTCAACTGATAGAATCTGGACTTTCAAATGATCAAATAATCAATCAATATCGTTTGATCTACGCTCGCAACCAAGAATTTCTGAAGACGTGGACGTCTTCTGAATCATCTGAATCCTCAAAAATGTCTTCTGGAGATTTTGTGACGACATCTTCCAGAATTCCAGAACCTCCACCGAAAATTCCAGTGATTTTCCGGAAAATCGATAATTATGATGAAAATTATGATCCACGAAGAC</canonical_amplicon>
		<polymorphic_amplicon>CGACATATTCTAGCTCAACTGATAGAATCTGGACTTTCAAATGATCAAATAATCAATCAATATCGTTTGATCTACGCTCGCAACCAAGAATTTCTGAAGACGTGGACGTCTTCTGAATCATCTGAATCCTCAAAAATGTCTTCTGGAGATYTTGTGACGACATCTTCCAGAATTCCAGAACCTCCACCGAAAATTCCAGTGATTTTCCGGAAAATCGATAATTATGATGAAAATTATGATCCACGAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25055</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>206387</contig_pos>
        <strand></strand>
        <context>ttggattttt[T/A]raaattttcg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGGTTGAACTTTTTCGAATTTTTTCAAATTTTTTTAAAAATTGGATTTTT</left_flank>
        <right_flank>GAAATTTTCGATTTTTGACATCTAGAAACTTCTAGAATTGCCTTAAATGC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGATTTTCATCATTTTTGATTTTTAAGTATTTTTAGTTTCAACAATTTCTAAAATTTCCAGAAAATGAGCAATCCACCAATCACAATGTACCAACGACATATTCTAGCTCAACTGATAGAATCTGGACTTTCAAATGATCAAATAATCAATCAATATCGTTTGATCTACGCTCGCAACCAAGAATTTCTGAAGACGTGGACGTCTTCTGAATCATCTGAATCCTCAAAAATGTCTTCTGGAGATTTTGTGACGACATCTTCCAGAATTCCAGAACCTCCACCGAAAATTCCAGTGATTTTCCGGAAAATCGATAATTATGATGAAAATTATGATCCACGAAGACTGGGAATATTGTTGAATTTGAGCAAAAAGAATCTGGGAGAACATGTGAGGAAATGGAAAATTGCTATAAATTTGACAACCGCAGAATTGGCTGGAAGAGTTGGTAGGTTGAACTTTTTCGAATTTTTTCAAATTTTTTTAAAAATTGGATTTTTTGAAATTTTCGATTTTTGACATCTAGAAACTTCTAGAATTGCCTTAAATGCTCTAAAAAAGTAGCAAAACCTTTTGCCGCCAAGAGGAATCGAACCTGGGTCGTCAGATTGGTAGTGGAAATTTCGGAAAATCCCACTGAGCCATTTGTGCATTTTCGGAAAAATCGCTCAAAAACACAAAAAAAAGAAATCTTGAGTGCTAGAAACTATTTTTATCATTTTTTCCGAGAAATTTGAATCTAGAATAGGTATTTCCATCGAGTTCGGAAAAAAAAACTTTTTTTCAAAAATTAGGATTTTTTGAAATTTTCGATTTTTGACATCTAGAAACTTCTAGAATAGCCTTAAATGCTTTAAAAAGGAAGAAAAAAAAGGTTTGCCGCTTAGTGGAATTGAACCTGTGTAGTCAAATTGGTAGTGGAAATGTTGAAATATCCCACTGAGCCATTTGTGCGTTTTCTGGAAAATCGCTCAAAAACACTGGAAAACGGAAATTTCAGA</canonical>
            <polymorphic>TTGATTTTCATCATTTTTGATTTTTAAGTATTTTTAGTTTCAACAATTTCTAAAATTTCCAGAAAATGAGCAATCCACCAATCACAATGTACCAACGACATATTCTAGCTCAACTGATAGAATCTGGACTTTCAAATGATCAAATAATCAATCAATATCGTTTGATCTACGCTCGCAACCAAGAATTTCTGAAGACGTGGACGTCTTCTGAATCATCTGAATCCTCAAAAATGTCTTCTGGAGATTTTGTGACGACATCTTCCAGAATTCCAGAACCTCCACCGAAAATTCCAGTGATTTTCCGGAAAATCGATAATTATGATGAAAATTATGATCCACGAAGACTGGGAATATTGTTGAATTTGAGCAAAAAGAATCTGGGAGAACATGTGAGGAAATGGAAAATTGCTATAAATTTGACAACCGCAGAATTGGCTGGAAGAGTTGGTAGGTTGAACTTTTTCGAATTTTTTCAAATTTTTTTAAAAATTGGATTTTTWGAAATTTTCGATTTTTGACATCTAGAAACTTCTAGAATTGCCTTAAATGCTCTAAAAAAGTAGCAAAACCTTTTGCCGCCAAGAGGAATCGAACCTGGGTCGTCAGATTGGTAGTGGAAATTTCGGAAAATCCCACTGAGCCATTTGTGCATTTTCGGAAAAATCGCTCAAAAACACAAAAAAAAGAAATCTTGAGTGCTAGAAACTATTTTTATCATTTTTTCCGAGAAATTTGAATCTAGAATAGGTATTTCCATCGAGTTCGGAAAAAAAAACTTTTTTTCAAAAATTAGGATTTTTTGAAATTTTCGATTTTTGACATCTAGAAACTTCTAGAATAGCCTTAAATGCTTTAAAAAGGAAGAAAAAAAAGGTTTGCCGCTTAGTGGAATTGAACCTGTGTAGTCAAATTGGTAGTGGAAATGTTGAAATATCCCACTGAGCCATTTGTGCGTTTTCTGGAAAATCGCTCAAAAACACTGGAAAACGGAAATTTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGAGTTGGTAGGTTGAACTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTCGTAGTGCAGACACC</pcr_primer_p2>
		<pcr_amplicon_size>688</pcr_amplicon_size>
		<canonical_amplicon>GAAGAGTTGGTAGGTTGAACTTTTTCGAATTTTTTCAAATTTTTTTAAAAATTGGATTTTTTGAAATTTTCGATTTTTGAC</canonical_amplicon>
		<polymorphic_amplicon>GAAGAGTTGGTAGGTTGAACTTTTTCGAATTTTTTCAAATTTTTTTAAAAATTGGATTTTTWGAAATTTTCGATTTTTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25056</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>206388</contig_pos>
        <strand></strand>
        <context>tggatttttw[G/A]aaattttcga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGTTGAACTTTTTCGAATTTTTTCAAATTTTTTTAAAAATTGGATTTTTT</left_flank>
        <right_flank>AAATTTTCGATTTTTGACATCTAGAAACTTCTAGAATTGCCTTAAATGCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATTTTCATCATTTTTGATTTTTAAGTATTTTTAGTTTCAACAATTTCTAAAATTTCCAGAAAATGAGCAATCCACCAATCACAATGTACCAACGACATATTCTAGCTCAACTGATAGAATCTGGACTTTCAAATGATCAAATAATCAATCAATATCGTTTGATCTACGCTCGCAACCAAGAATTTCTGAAGACGTGGACGTCTTCTGAATCATCTGAATCCTCAAAAATGTCTTCTGGAGATTTTGTGACGACATCTTCCAGAATTCCAGAACCTCCACCGAAAATTCCAGTGATTTTCCGGAAAATCGATAATTATGATGAAAATTATGATCCACGAAGACTGGGAATATTGTTGAATTTGAGCAAAAAGAATCTGGGAGAACATGTGAGGAAATGGAAAATTGCTATAAATTTGACAACCGCAGAATTGGCTGGAAGAGTTGGTAGGTTGAACTTTTTCGAATTTTTTCAAATTTTTTTAAAAATTGGATTTTTTGAAATTTTCGATTTTTGACATCTAGAAACTTCTAGAATTGCCTTAAATGCTCTAAAAAAGTAGCAAAACCTTTTGCCGCCAAGAGGAATCGAACCTGGGTCGTCAGATTGGTAGTGGAAATTTCGGAAAATCCCACTGAGCCATTTGTGCATTTTCGGAAAAATCGCTCAAAAACACAAAAAAAAGAAATCTTGAGTGCTAGAAACTATTTTTATCATTTTTTCCGAGAAATTTGAATCTAGAATAGGTATTTCCATCGAGTTCGGAAAAAAAAACTTTTTTTCAAAAATTAGGATTTTTTGAAATTTTCGATTTTTGACATCTAGAAACTTCTAGAATAGCCTTAAATGCTTTAAAAAGGAAGAAAAAAAAGGTTTGCCGCTTAGTGGAATTGAACCTGTGTAGTCAAATTGGTAGTGGAAATGTTGAAATATCCCACTGAGCCATTTGTGCGTTTTCTGGAAAATCGCTCAAAAACACTGGAAAACGGAAATTTCAGAG</canonical>
            <polymorphic>TGATTTTCATCATTTTTGATTTTTAAGTATTTTTAGTTTCAACAATTTCTAAAATTTCCAGAAAATGAGCAATCCACCAATCACAATGTACCAACGACATATTCTAGCTCAACTGATAGAATCTGGACTTTCAAATGATCAAATAATCAATCAATATCGTTTGATCTACGCTCGCAACCAAGAATTTCTGAAGACGTGGACGTCTTCTGAATCATCTGAATCCTCAAAAATGTCTTCTGGAGATTTTGTGACGACATCTTCCAGAATTCCAGAACCTCCACCGAAAATTCCAGTGATTTTCCGGAAAATCGATAATTATGATGAAAATTATGATCCACGAAGACTGGGAATATTGTTGAATTTGAGCAAAAAGAATCTGGGAGAACATGTGAGGAAATGGAAAATTGCTATAAATTTGACAACCGCAGAATTGGCTGGAAGAGTTGGTAGGTTGAACTTTTTCGAATTTTTTCAAATTTTTTTAAAAATTGGATTTTTTRAAATTTTCGATTTTTGACATCTAGAAACTTCTAGAATTGCCTTAAATGCTCTAAAAAAGTAGCAAAACCTTTTGCCGCCAAGAGGAATCGAACCTGGGTCGTCAGATTGGTAGTGGAAATTTCGGAAAATCCCACTGAGCCATTTGTGCATTTTCGGAAAAATCGCTCAAAAACACAAAAAAAAGAAATCTTGAGTGCTAGAAACTATTTTTATCATTTTTTCCGAGAAATTTGAATCTAGAATAGGTATTTCCATCGAGTTCGGAAAAAAAAACTTTTTTTCAAAAATTAGGATTTTTTGAAATTTTCGATTTTTGACATCTAGAAACTTCTAGAATAGCCTTAAATGCTTTAAAAAGGAAGAAAAAAAAGGTTTGCCGCTTAGTGGAATTGAACCTGTGTAGTCAAATTGGTAGTGGAAATGTTGAAATATCCCACTGAGCCATTTGTGCGTTTTCTGGAAAATCGCTCAAAAACACTGGAAAACGGAAATTTCAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGAGTTGGTAGGTTGAACTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTCGTAGTGCAGACACC</pcr_primer_p2>
		<pcr_amplicon_size>688</pcr_amplicon_size>
		<canonical_amplicon>GAAGAGTTGGTAGGTTGAACTTTTTCGAATTTTTTCAAATTTTTTTAAAAATTGGATTTTTTGAAATTTTCGATTTTTGACA</canonical_amplicon>
		<polymorphic_amplicon>GAAGAGTTGGTAGGTTGAACTTTTTCGAATTTTTTCAAATTTTTTTAAAAATTGGATTTTTTRAAATTTTCGATTTTTGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25057</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>206426</contig_pos>
        <strand></strand>
        <context>cttctagaat[T/A]gccttaaatg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATTGGATTTTTTGAAATTTTCGATTTTTGACATCTAGAAACTTCTAGAAT</left_flank>
        <right_flank>GCCTTAAATGCTCTAAAAAAGTAGCAAAACCTTTTGCCGCCAAGAGGAAT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAACAATTTCTAAAATTTCCAGAAAATGAGCAATCCACCAATCACAATGTACCAACGACATATTCTAGCTCAACTGATAGAATCTGGACTTTCAAATGATCAAATAATCAATCAATATCGTTTGATCTACGCTCGCAACCAAGAATTTCTGAAGACGTGGACGTCTTCTGAATCATCTGAATCCTCAAAAATGTCTTCTGGAGATTTTGTGACGACATCTTCCAGAATTCCAGAACCTCCACCGAAAATTCCAGTGATTTTCCGGAAAATCGATAATTATGATGAAAATTATGATCCACGAAGACTGGGAATATTGTTGAATTTGAGCAAAAAGAATCTGGGAGAACATGTGAGGAAATGGAAAATTGCTATAAATTTGACAACCGCAGAATTGGCTGGAAGAGTTGGTAGGTTGAACTTTTTCGAATTTTTTCAAATTTTTTTAAAAATTGGATTTTTTGAAATTTTCGATTTTTGACATCTAGAAACTTCTAGAATTGCCTTAAATGCTCTAAAAAAGTAGCAAAACCTTTTGCCGCCAAGAGGAATCGAACCTGGGTCGTCAGATTGGTAGTGGAAATTTCGGAAAATCCCACTGAGCCATTTGTGCATTTTCGGAAAAATCGCTCAAAAACACAAAAAAAAGAAATCTTGAGTGCTAGAAACTATTTTTATCATTTTTTCCGAGAAATTTGAATCTAGAATAGGTATTTCCATCGAGTTCGGAAAAAAAAACTTTTTTTCAAAAATTAGGATTTTTTGAAATTTTCGATTTTTGACATCTAGAAACTTCTAGAATAGCCTTAAATGCTTTAAAAAGGAAGAAAAAAAAGGTTTGCCGCTTAGTGGAATTGAACCTGTGTAGTCAAATTGGTAGTGGAAATGTTGAAATATCCCACTGAGCCATTTGTGCGTTTTCTGGAAAATCGCTCAAAAACACTGGAAAACGGAAATTTCAGAGTTAGAAATTAGTTTTATGGCCTTTTTTGAGTAATTTTG</canonical>
            <polymorphic>TCAACAATTTCTAAAATTTCCAGAAAATGAGCAATCCACCAATCACAATGTACCAACGACATATTCTAGCTCAACTGATAGAATCTGGACTTTCAAATGATCAAATAATCAATCAATATCGTTTGATCTACGCTCGCAACCAAGAATTTCTGAAGACGTGGACGTCTTCTGAATCATCTGAATCCTCAAAAATGTCTTCTGGAGATTTTGTGACGACATCTTCCAGAATTCCAGAACCTCCACCGAAAATTCCAGTGATTTTCCGGAAAATCGATAATTATGATGAAAATTATGATCCACGAAGACTGGGAATATTGTTGAATTTGAGCAAAAAGAATCTGGGAGAACATGTGAGGAAATGGAAAATTGCTATAAATTTGACAACCGCAGAATTGGCTGGAAGAGTTGGTAGGTTGAACTTTTTCGAATTTTTTCAAATTTTTTTAAAAATTGGATTTTTTGAAATTTTCGATTTTTGACATCTAGAAACTTCTAGAATWGCCTTAAATGCTCTAAAAAAGTAGCAAAACCTTTTGCCGCCAAGAGGAATCGAACCTGGGTCGTCAGATTGGTAGTGGAAATTTCGGAAAATCCCACTGAGCCATTTGTGCATTTTCGGAAAAATCGCTCAAAAACACAAAAAAAAGAAATCTTGAGTGCTAGAAACTATTTTTATCATTTTTTCCGAGAAATTTGAATCTAGAATAGGTATTTCCATCGAGTTCGGAAAAAAAAACTTTTTTTCAAAAATTAGGATTTTTTGAAATTTTCGATTTTTGACATCTAGAAACTTCTAGAATAGCCTTAAATGCTTTAAAAAGGAAGAAAAAAAAGGTTTGCCGCTTAGTGGAATTGAACCTGTGTAGTCAAATTGGTAGTGGAAATGTTGAAATATCCCACTGAGCCATTTGTGCGTTTTCTGGAAAATCGCTCAAAAACACTGGAAAACGGAAATTTCAGAGTTAGAAATTAGTTTTATGGCCTTTTTTGAGTAATTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>130 111 86 83 83 82 58 44 36 33 33 28 26 21 19 16 16 15 15 12 12 10 10 9 7 5</canonical_bands>
                <polymorphic_bands>130 116 111 86 83 82 58 44 36 33 28 26 21 19 16 16 15 15 12 12 10 10 9 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGAGTTGGTAGGTTGAACTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTCGTAGTGCAGACACC</pcr_primer_p2>
		<pcr_amplicon_size>688</pcr_amplicon_size>
		<canonical_amplicon>GAAGAGTTGGTAGGTTGAACTTTTTCGAATTTTTTCAAATTTTTTTAAAAATTGGATTTTTTGAAATTTTCGATTTTTGACATCTAGAAACTTCTAGAATTGCCTTAAATGCTCTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAAGAGTTGGTAGGTTGAACTTTTTCGAATTTTTTCAAATTTTTTTAAAAATTGGATTTTTTGAAATTTTCGATTTTTGACATCTAGAAACTTCTAGAATWGCCTTAAATGCTCTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25058</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>236630</contig_pos>
        <strand></strand>
        <context>ttgtcaaaaa[G/A]tttyctcaca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GCTGTCAATTACAAAATTGAAGCTCTATTTTCATTCTATATTGTCAAAAA</left_flank>
        <right_flank>TTTTCTCACAAATCGGAAAATTACGAATAATTTTTTTCAAGACTTCAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCCAAACGGGCGAGGGGCGGGTCAACTTTAAAAGCGCATATTTCAAAAACTACGGTAGCTAGAAAAACTTAGCAAATTGAAAAAATGTGTAAAATTAAGTTTTAAATTCACTCATAATTATAAAATATGTCTAGGTACTGTAGTTTGAAGGTGTGCGTCTTTAAATTGGGCATGCTCTTCTGCTTGGCTCGCCCCAGGCGTACAGTAGGCAGACCAAATTTAAAGGCGCATACCTCAAGAACCACGGTAGCTAGAAAAAAGATGTCAATTAAAAAAGTATGTGAAATTAAATTTTACATTTACTGTTGTTAAAAAATTAGGTCTTGCTACTGTAGTTTTGGAGCTATGAGTCTTTAAAGTTAACGCACCTCATAGCCTGGCGCGCCATTCTGATGGGTGCGTCGCATTTAAAGGCGCATATCTCAAAAACTACAGTAGCTAGAAAAAAGCTGTCAATTACAAAATTGAAGCTCTATTTTCATTCTATATTGTCAAAAAGTTTTCTCACAAATCGGAAAATTACGAATAATTTTTTTCAAGACTTCAAAATTAGATTCTCATTCTTTCAAAAAGTATAAAATTTTCTAATATTGTTTTCCAAAATTTTGGCTCTATTGGTCCCCACTTTTTTTTGCCCAATTTTTTCTTGAATATTGAACTTTCCACCCAAGAAAATATCTGTACTTTTCTTCTCCTTTTAGGTCAAAAAACGTGGGATTCTTGAGAAAAATTTTTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAATATTTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACAGAAAACAAGTTATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAATTCGAGAAAAATTTTTTTTTTCTAAACATTCTGAAATTCCAGAAAACAATTTTTTTAGGTTGCCTCCCTCTCATTTGTGGAACGTTGTGCCGCAAAAGTGATCGGTCAAATTCCTGACGTCTCTTATCAAATGGCT</canonical>
            <polymorphic>CGCCAAACGGGCGAGGGGCGGGTCAACTTTAAAAGCGCATATTTCAAAAACTACGGTAGCTAGAAAAACTTAGCAAATTGAAAAAATGTGTAAAATTAAGTTTTAAATTCACTCATAATTATAAAATATGTCTAGGTACTGTAGTTTGAAGGTGTGCGTCTTTAAATTGGGCATGCTCTTCTGCTTGGCTCGCCCCAGGCGTACAGTAGGCAGACCAAATTTAAAGGCGCATACCTCAAGAACCACGGTAGCTAGAAAAAAGATGTCAATTAAAAAAGTATGTGAAATTAAATTTTACATTTACTGTTGTTAAAAAATTAGGTCTTGCTACTGTAGTTTTGGAGCTATGAGTCTTTAAAGTTAACGCACCTCATAGCCTGGCGCGCCATTCTGATGGGTGCGTCGCATTTAAAGGCGCATATCTCAAAAACTACAGTAGCTAGAAAAAAGCTGTCAATTACAAAATTGAAGCTCTATTTTCATTCTATATTGTCAAAAARTTTTCTCACAAATCGGAAAATTACGAATAATTTTTTTCAAGACTTCAAAATTAGATTCTCATTCTTTCAAAAAGTATAAAATTTTCTAATATTGTTTTCCAAAATTTTGGCTCTATTGGTCCCCACTTTTTTTTGCCCAATTTTTTCTTGAATATTGAACTTTCCACCCAAGAAAATATCTGTACTTTTCTTCTCCTTTTAGGTCAAAAAACGTGGGATTCTTGAGAAAAATTTTTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAATATTTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACAGAAAACAAGTTATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAATTCGAGAAAAATTTTTTTTTTCTAAACATTCTGAAATTCCAGAAAACAATTTTTTTAGGTTGCCTCCCTCTCATTTGTGGAACGTTGTGCCGCAAAAGTGATCGGTCAAATTCCTGACGTCTCTTATCAAATGGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAAAGCATCCAAAGTGGT</pcr_primer_p1>
		<pcr_primer_p2>TTATACTTTTTGAAAGAATGAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>745</pcr_amplicon_size>
		<canonical_amplicon>AGTTTTCTCACAAATCGGAAAATTACGAATAATTTTTTTCAAGACTTCAAAATTAGATTCTCATTCTTTCAAAAAGTATAA</canonical_amplicon>
		<polymorphic_amplicon>ARTTTTCTCACAAATCGGAAAATTACGAATAATTTTTTTCAAGACTTCAAAATTAGATTCTCATTCTTTCAAAAAGTATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25059</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>236634</contig_pos>
        <strand></strand>
        <context>caaaaarttt[T/C]ctcacaaatc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCAATTACAAAATTGAAGCTCTATTTTCATTCTATATTGTCAAAAAGTTT</left_flank>
        <right_flank>CTCACAAATCGGAAAATTACGAATAATTTTTTTCAAGACTTCAAAATTAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACGGGCGAGGGGCGGGTCAACTTTAAAAGCGCATATTTCAAAAACTACGGTAGCTAGAAAAACTTAGCAAATTGAAAAAATGTGTAAAATTAAGTTTTAAATTCACTCATAATTATAAAATATGTCTAGGTACTGTAGTTTGAAGGTGTGCGTCTTTAAATTGGGCATGCTCTTCTGCTTGGCTCGCCCCAGGCGTACAGTAGGCAGACCAAATTTAAAGGCGCATACCTCAAGAACCACGGTAGCTAGAAAAAAGATGTCAATTAAAAAAGTATGTGAAATTAAATTTTACATTTACTGTTGTTAAAAAATTAGGTCTTGCTACTGTAGTTTTGGAGCTATGAGTCTTTAAAGTTAACGCACCTCATAGCCTGGCGCGCCATTCTGATGGGTGCGTCGCATTTAAAGGCGCATATCTCAAAAACTACAGTAGCTAGAAAAAAGCTGTCAATTACAAAATTGAAGCTCTATTTTCATTCTATATTGTCAAAAAGTTTTCTCACAAATCGGAAAATTACGAATAATTTTTTTCAAGACTTCAAAATTAGATTCTCATTCTTTCAAAAAGTATAAAATTTTCTAATATTGTTTTCCAAAATTTTGGCTCTATTGGTCCCCACTTTTTTTTGCCCAATTTTTTCTTGAATATTGAACTTTCCACCCAAGAAAATATCTGTACTTTTCTTCTCCTTTTAGGTCAAAAAACGTGGGATTCTTGAGAAAAATTTTTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAATATTTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACAGAAAACAAGTTATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAATTCGAGAAAAATTTTTTTTTTCTAAACATTCTGAAATTCCAGAAAACAATTTTTTTAGGTTGCCTCCCTCTCATTTGTGGAACGTTGTGCCGCAAAAGTGATCGGTCAAATTCCTGACGTCTCTTATCAAATGGCTCTTG</canonical>
            <polymorphic>AAACGGGCGAGGGGCGGGTCAACTTTAAAAGCGCATATTTCAAAAACTACGGTAGCTAGAAAAACTTAGCAAATTGAAAAAATGTGTAAAATTAAGTTTTAAATTCACTCATAATTATAAAATATGTCTAGGTACTGTAGTTTGAAGGTGTGCGTCTTTAAATTGGGCATGCTCTTCTGCTTGGCTCGCCCCAGGCGTACAGTAGGCAGACCAAATTTAAAGGCGCATACCTCAAGAACCACGGTAGCTAGAAAAAAGATGTCAATTAAAAAAGTATGTGAAATTAAATTTTACATTTACTGTTGTTAAAAAATTAGGTCTTGCTACTGTAGTTTTGGAGCTATGAGTCTTTAAAGTTAACGCACCTCATAGCCTGGCGCGCCATTCTGATGGGTGCGTCGCATTTAAAGGCGCATATCTCAAAAACTACAGTAGCTAGAAAAAAGCTGTCAATTACAAAATTGAAGCTCTATTTTCATTCTATATTGTCAAAAAGTTTYCTCACAAATCGGAAAATTACGAATAATTTTTTTCAAGACTTCAAAATTAGATTCTCATTCTTTCAAAAAGTATAAAATTTTCTAATATTGTTTTCCAAAATTTTGGCTCTATTGGTCCCCACTTTTTTTTGCCCAATTTTTTCTTGAATATTGAACTTTCCACCCAAGAAAATATCTGTACTTTTCTTCTCCTTTTAGGTCAAAAAACGTGGGATTCTTGAGAAAAATTTTTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAATATTTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACAGAAAACAAGTTATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAATTCGAGAAAAATTTTTTTTTTCTAAACATTCTGAAATTCCAGAAAACAATTTTTTTAGGTTGCCTCCCTCTCATTTGTGGAACGTTGTGCCGCAAAAGTGATCGGTCAAATTCCTGACGTCTCTTATCAAATGGCTCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAAAGCATCCAAAGTGGT</pcr_primer_p1>
		<pcr_primer_p2>TTATACTTTTTGAAAGAATGAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>745</pcr_amplicon_size>
		<canonical_amplicon>TTCTCACAAATCGGAAAATTACGAATAATTTTTTTCAAGACTTCAAAATTAGATTCTCATTCTTTCAAAAAGTATAA</canonical_amplicon>
		<polymorphic_amplicon>TYCTCACAAATCGGAAAATTACGAATAATTTTTTTCAAGACTTCAAAATTAGATTCTCATTCTTTCAAAAAGTATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25060</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>237006</contig_pos>
        <strand>+</strand>
        <context>TCGAGAAAAA[A/C]TTTTTTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAATTCGAGAAAAA</left_flank>
        <right_flank>TTTTTTTTTCTAAACATTCTGAAATTCCAGAAAACAATTTTTTTAGGTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTGGCGCGCCATTCTGATGGGTGCGTCGCATTTAAAGGCGCATATCTCAAAAACTACAGTAGCTAGAAAAAAGCTGTCAATTACAAAATTGAAGCTCTATTTTCATTCTATATTGTCAAAAAGTTTTCTCACAAATCGGAAAATTACGAATAATTTTTTTCAAGACTTCAAAATTAGATTCTCATTCTTTCAAAAAGTATAAAATTTTCTAATATTGTTTTCCAAAATTTTGGCTCTATTGGTCCCCACTTTTTTTTGCCCAATTTTTTCTTGAATATTGAACTTTCCACCCAAGAAAATATCTGTACTTTTCTTCTCCTTTTAGGTCAAAAAACGTGGGATTCTTGAGAAAAATTTTTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAATATTTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACAGAAAACAAGTTATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAATTCGAGAAAAATTTTTTTTTTCTAAACATTCTGAAATTCCAGAAAACAATTTTTTTAGGTTGCCTCCCTCTCATTTGTGGAACGTTGTGCCGCAAAAGTGATCGGTCAAATTCCTGACGTCTCTTATCAAATGGCTCTTGACGATCTTCTGAAAGCAGATCATCTGGAAGAAGGCGTTGCTGAAAATCAGCTATTCATCGGAAAAACCTATTTGGCTATGGGCAATTTGGTCAAGGCCAAGAAATGGTTGGTCAAGGTAAAGAATTGCAAAAAAGTGAGACACCAAAAATGCGTCAAGGTACTAGAAATGCGCCAGGTCATTAGAAATGTGTCAAGTCCCTATAAATGCGTCAGAGACACTAAAAAGGCGCCAAGTCACCGAAAATGCGCCAATACACGGGAAATGCGTTAAGTCATTGAAAAGGCACCAAGTCACCCAAAATGCGTCATGAGGTTCAAGATTTTTTCATAGACACTAAAAGCGCGTCAAGGCACCAAAAGCGCGCCAAGGC</canonical>
            <polymorphic>CCTGGCGCGCCATTCTGATGGGTGCGTCGCATTTAAAGGCGCATATCTCAAAAACTACAGTAGCTAGAAAAAAGCTGTCAATTACAAAATTGAAGCTCTATTTTCATTCTATATTGTCAAAAAGTTTTCTCACAAATCGGAAAATTACGAATAATTTTTTTCAAGACTTCAAAATTAGATTCTCATTCTTTCAAAAAGTATAAAATTTTCTAATATTGTTTTCCAAAATTTTGGCTCTATTGGTCCCCACTTTTTTTTGCCCAATTTTTTCTTGAATATTGAACTTTCCACCCAAGAAAATATCTGTACTTTTCTTCTCCTTTTAGGTCAAAAAACGTGGGATTCTTGAGAAAAATTTTTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAATATTTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACAGAAAACAAGTTATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAATTCGAGAAAAAMTTTTTTTTTCTAAACATTCTGAAATTCCAGAAAACAATTTTTTTAGGTTGCCTCCCTCTCATTTGTGGAACGTTGTGCCGCAAAAGTGATCGGTCAAATTCCTGACGTCTCTTATCAAATGGCTCTTGACGATCTTCTGAAAGCAGATCATCTGGAAGAAGGCGTTGCTGAAAATCAGCTATTCATCGGAAAAACCTATTTGGCTATGGGCAATTTGGTCAAGGCCAAGAAATGGTTGGTCAAGGTAAAGAATTGCAAAAAAGTGAGACACCAAAAATGCGTCAAGGTACTAGAAATGCGCCAGGTCATTAGAAATGTGTCAAGTCCCTATAAATGCGTCAGAGACACTAAAAAGGCGCCAAGTCACCGAAAATGCGCCAATACACGGGAAATGCGTTAAGTCATTGAAAAGGCACCAAGTCACCCAAAATGCGTCATGAGGTTCAAGATTTTTTCATAGACACTAAAAGCGCGTCAAGGCACCAAAAGCGCGCCAAGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>404 203 127 83 74 50 25 23 11</canonical_bands>
                <polymorphic_bands>404 203 127 83 74 50 36 23</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>250 115 91 83 79 61 55 50 39 36 31 25 23 20 13 11 10 8</canonical_bands>
                <polymorphic_bands>250 115 91 83 79 61 55 50 39 36 36 31 23 20 13 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTGTCACTTTTTAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AATTTGACCGATCACTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAATATTTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACAGAAAACAAGTTATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAATTCGAGAAAAATTTTTTTTTTCTAAACATTCTGAAATTCCAGAAAACAATTTTTTTAGGTTGCCTCCCTCTCATTTGTGGAACGTTGTGCCGCAAAAGTGATCGGTCAAATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTGTCACTTTTTAGTTTTTTTTTTGTTGAAAATATTTGTAAATTCTGAAGTACTTTGTACCTGCAAAAGGAGACAGAAAACAAGTTATAAATCTATTCTAGAACAAAAAATCGATTGGAAAAAAATTCGAGAAAAAMTTTTTTTTTCTAAACATTCTGAAATTCCAGAAAACAATTTTTTTAGGTTGCCTCCCTCTCATTTGTGGAACGTTGTGCCGCAAAAGTGATCGGTCAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25061</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>239801</contig_pos>
        <strand></strand>
        <context>AAATTCAAAT[C/T]TTGAAAATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTCTGAAATTCTCATAGAAATTGTTTCAAAAAAACTGGAAAATTCAAAT</left_flank>
        <right_flank>TTGAAAATTCAGAACTTCCAAAAATTGTGATTTTTAGAAAATGTGATATT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTTACATGACTTGTGAGACGAGCAGCACAGCAAATAGTAGTAATATAATCCAGCGCCGCATCGGCGCCATTTGTGTTACCTGCAAAATTTGAAAGGTTTGGCGGAAATTCAAATTTCTATTCAGATTTTAAAGTTTAGATAATTGAGATGAGTAAACAGGAAAAATTGAGCCCAAATTCAGAGAATTAAAAATTTCAAAAAAGAGCCAAAAAACTTTTTTTTGGATTTCCTGAAAAAGGAAAAAAATAGGGAGAACTTGAAAAGAAAATTATAGGTTTCGGGGACATTTTTAGGTAAAAAAGTGGAGTTTTTTTCTATTTTTAGAATCTTTTTTTTTGGGATTTTTTTTTCTGGAAAATTGGAAAAAATGTGTGTGGGAAGAAAAAAGGATAATCAATGAGGAAATGGATCAAATTAGGTCAGAAAAAGAGGAAAATATGAGTCTTTGGTCTGAAATTCTCATAGAAATTGTTTCAAAAAAACTGGAAAATTCAAATCTTGAAAATTCAGAACTTCCAAAAATTGTGATTTTTAGAAAATGTGATATTAAAAATTCAAATTTTGAAAGAAAACAAAAATTTTCGAAAGCTGAGAAATCTAGCAATTCTGAAAACCCAAAACTTTTCCAATAATCAAAAAATTCTGATTTTCTCAAAATCCTAAATTTTAAGAAAATCTGAAATATCTGAAAATCCAAAAAATTTAAGAAACCTGAAATTTCTAGAAATCCCAAATTTAGAAAAATCTAGAATTTTTGAAAATCAATAAATTTGGAAATTTCTAAAAATTCAAACATTTTGGAAAATCTATAATTTCCTAAAATCTAGAAAATTTAGAAATCTGATGTTTCTGAAAATCCAAAATTTCTAAAAATCAACTTTCCAACATTTAAACAAGAGTTTCGAATTTTCTGAAATTCTGGATTTTCAGACTTTTTTTTTTGAAATCTCTGAACCTTTAAAAAATGACGTGGCTTTTTTTTCACAATCTGTGTCCAA</canonical>
            <polymorphic>AACTTACATGACTTGTGAGACGAGCAGCACAGCAAATAGTAGTAATATAATCCAGCGCCGCATCGGCGCCATTTGTGTTACCTGCAAAATTTGAAAGGTTTGGCGGAAATTCAAATTTCTATTCAGATTTTAAAGTTTAGATAATTGAGATGAGTAAACAGGAAAAATTGAGCCCAAATTCAGAGAATTAAAAATTTCAAAAAAGAGCCAAAAAACTTTTTTTTGGATTTCCTGAAAAAGGAAAAAAATAGGGAGAACTTGAAAAGAAAATTATAGGTTTCGGGGACATTTTTAGGTAAAAAAGTGGAGTTTTTTTCTATTTTTAGAATCTTTTTTTTTGGGATTTTTTTTTCTGGAAAATTGGAAAAAATGTGTGTGGGAAGAAAAAAGGATAATCAATGAGGAAATGGATCAAATTAGGTCAGAAAAAGAGGAAAATATGAGTCTTTGGTCTGAAATTCTCATAGAAATTGTTTCAAAAAAACTGGAAAATTCAAATYTTGAAAATTCAGAACTTCCAAAAATTGTGATTTTTAGAAAATGTGATATTAAAAATTCAAATTTTGAAAGAAAACAAAAATTTTCGAAAGCTGAGAAATCTAGCAATTCTGAAAACCCAAAACTTTTCCAATAATCAAAAAATTCTGATTTTCTCAAAATCCTAAATTTTAAGAAAATCTGAAATATCTGAAAATCCAAAAAATTTAAGAAACCTGAAATTTCTAGAAATCCCAAATTTAGAAAAATCTAGAATTTTTGAAAATCAATAAATTTGGAAATTTCTAAAAATTCAAACATTTTGGAAAATCTATAATTTCCTAAAATCTAGAAAATTTAGAAATCTGATGTTTCTGAAAATCCAAAATTTCTAAAAATCAACTTTCCAACATTTAAACAAGAGTTTCGAATTTTCTGAAATTCTGGATTTTCAGACTTTTTTTTTTGAAATCTCTGAACCTTTAAAAAATGACGTGGCTTTTTTTTCACAATCTGTGTCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>231 223 147 122 95 79 78 25</canonical_bands>
                <polymorphic_bands>370 231 122 95 79 78 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGGATAATCAATGAGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGTTTTGGGTTTTCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AAAAGGATAATCAATGAGGAAATGGATCAAATTAGGTCAGAAAAAGAGGAAAATATGAGTCTTTGGTCTGAAATTCTCATAGAAATTGTTTCAAAAAAACTGGAAAATTCAAATCTTGAAAATTCAGAACTTCCAAAAATTGTGATTTTTAGAAAATGTGATATTAAAAATTCAAATTTTGAAAGAAAACAAAAATTTTCGAAAGCTGAGAAATCTAGCAATTCTGAAAACCCAAAACTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGGATAATCAATGAGGAAATGGATCAAATTAGGTCAGAAAAAGAGGAAAATATGAGTCTTTGGTCTGAAATTCTCATAGAAATTGTTTCAAAAAAACTGGAAAATTCAAATYTTGAAAATTCAGAACTTCCAAAAATTGTGATTTTTAGAAAATGTGATATTAAAAATTCAAATTTTGAAAGAAAACAAAAATTTTCGAAAGCTGAGAAATCTAGCAATTCTGAAAACCCAAAACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25062</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>239852</contig_pos>
        <strand></strand>
        <context>ATGTGATATT[A/G]AAAATTCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAAAATTCAGAACTTCCAAAAATTGTGATTTTTAGAAAATGTGATATT</left_flank>
        <right_flank>AAAATTCAAATTTTGAAAGAAAACAAAAATTTTCGAAAGCTGAGAAATCT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGCGCCGCATCGGCGCCATTTGTGTTACCTGCAAAATTTGAAAGGTTTGGCGGAAATTCAAATTTCTATTCAGATTTTAAAGTTTAGATAATTGAGATGAGTAAACAGGAAAAATTGAGCCCAAATTCAGAGAATTAAAAATTTCAAAAAAGAGCCAAAAAACTTTTTTTTGGATTTCCTGAAAAAGGAAAAAAATAGGGAGAACTTGAAAAGAAAATTATAGGTTTCGGGGACATTTTTAGGTAAAAAAGTGGAGTTTTTTTCTATTTTTAGAATCTTTTTTTTTGGGATTTTTTTTTCTGGAAAATTGGAAAAAATGTGTGTGGGAAGAAAAAAGGATAATCAATGAGGAAATGGATCAAATTAGGTCAGAAAAAGAGGAAAATATGAGTCTTTGGTCTGAAATTCTCATAGAAATTGTTTCAAAAAAACTGGAAAATTCAAATCTTGAAAATTCAGAACTTCCAAAAATTGTGATTTTTAGAAAATGTGATATTAAAAATTCAAATTTTGAAAGAAAACAAAAATTTTCGAAAGCTGAGAAATCTAGCAATTCTGAAAACCCAAAACTTTTCCAATAATCAAAAAATTCTGATTTTCTCAAAATCCTAAATTTTAAGAAAATCTGAAATATCTGAAAATCCAAAAAATTTAAGAAACCTGAAATTTCTAGAAATCCCAAATTTAGAAAAATCTAGAATTTTTGAAAATCAATAAATTTGGAAATTTCTAAAAATTCAAACATTTTGGAAAATCTATAATTTCCTAAAATCTAGAAAATTTAGAAATCTGATGTTTCTGAAAATCCAAAATTTCTAAAAATCAACTTTCCAACATTTAAACAAGAGTTTCGAATTTTCTGAAATTCTGGATTTTCAGACTTTTTTTTTTGAAATCTCTGAACCTTTAAAAAATGACGTGGCTTTTTTTTCACAATCTGTGTCCAATTATAGAATTTTCAATTCTTTTCTCAAAAACTAGACGGGGCAAAAATTTAA</canonical>
            <polymorphic>CCAGCGCCGCATCGGCGCCATTTGTGTTACCTGCAAAATTTGAAAGGTTTGGCGGAAATTCAAATTTCTATTCAGATTTTAAAGTTTAGATAATTGAGATGAGTAAACAGGAAAAATTGAGCCCAAATTCAGAGAATTAAAAATTTCAAAAAAGAGCCAAAAAACTTTTTTTTGGATTTCCTGAAAAAGGAAAAAAATAGGGAGAACTTGAAAAGAAAATTATAGGTTTCGGGGACATTTTTAGGTAAAAAAGTGGAGTTTTTTTCTATTTTTAGAATCTTTTTTTTTGGGATTTTTTTTTCTGGAAAATTGGAAAAAATGTGTGTGGGAAGAAAAAAGGATAATCAATGAGGAAATGGATCAAATTAGGTCAGAAAAAGAGGAAAATATGAGTCTTTGGTCTGAAATTCTCATAGAAATTGTTTCAAAAAAACTGGAAAATTCAAATCTTGAAAATTCAGAACTTCCAAAAATTGTGATTTTTAGAAAATGTGATATTRAAAATTCAAATTTTGAAAGAAAACAAAAATTTTCGAAAGCTGAGAAATCTAGCAATTCTGAAAACCCAAAACTTTTCCAATAATCAAAAAATTCTGATTTTCTCAAAATCCTAAATTTTAAGAAAATCTGAAATATCTGAAAATCCAAAAAATTTAAGAAACCTGAAATTTCTAGAAATCCCAAATTTAGAAAAATCTAGAATTTTTGAAAATCAATAAATTTGGAAATTTCTAAAAATTCAAACATTTTGGAAAATCTATAATTTCCTAAAATCTAGAAAATTTAGAAATCTGATGTTTCTGAAAATCCAAAATTTCTAAAAATCAACTTTCCAACATTTAAACAAGAGTTTCGAATTTTCTGAAATTCTGGATTTTCAGACTTTTTTTTTTGAAATCTCTGAACCTTTAAAAAATGACGTGGCTTTTTTTTCACAATCTGTGTCCAATTATAGAATTTTCAATTCTTTTCTCAAAAACTAGACGGGGCAAAAATTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>361 186 120 88 79 69 58 36 3</canonical_bands>
                <polymorphic_bands>481 186 88 79 69 58 36 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGGATAATCAATGAGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGTTTTGGGTTTTCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AAAAGGATAATCAATGAGGAAATGGATCAAATTAGGTCAGAAAAAGAGGAAAATATGAGTCTTTGGTCTGAAATTCTCATAGAAATTGTTTCAAAAAAACTGGAAAATTCAAATCTTGAAAATTCAGAACTTCCAAAAATTGTGATTTTTAGAAAATGTGATATTAAAAATTCAAATTTTGAAAGAAAACAAAAATTTTCGAAAGCTGAGAAATCTAGCAATTCTGAAAACCCAAAACTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGGATAATCAATGAGGAAATGGATCAAATTAGGTCAGAAAAAGAGGAAAATATGAGTCTTTGGTCTGAAATTCTCATAGAAATTGTTTCAAAAAAACTGGAAAATTCAAATCTTGAAAATTCAGAACTTCCAAAAATTGTGATTTTTAGAAAATGTGATATTRAAAATTCAAATTTTGAAAGAAAACAAAAATTTTCGAAAGCTGAGAAATCTAGCAATTCTGAAAACCCAAAACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25063</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>240015</contig_pos>
        <strand></strand>
        <context>TTTAAGAAAC[C/T]tgaaatttct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTTTAAGAAAATCTGAAATATCTGAAAATCCAAAAAATTTAAGAAAC</left_flank>
        <right_flank>TGAAATTTCTAGAAATCCCAAATTTAGAAAAATCTAGAATTTTTGAAAAT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTTTTTTGGATTTCCTGAAAAAGGAAAAAAATAGGGAGAACTTGAAAAGAAAATTATAGGTTTCGGGGACATTTTTAGGTAAAAAAGTGGAGTTTTTTTCTATTTTTAGAATCTTTTTTTTTGGGATTTTTTTTTCTGGAAAATTGGAAAAAATGTGTGTGGGAAGAAAAAAGGATAATCAATGAGGAAATGGATCAAATTAGGTCAGAAAAAGAGGAAAATATGAGTCTTTGGTCTGAAATTCTCATAGAAATTGTTTCAAAAAAACTGGAAAATTCAAATCTTGAAAATTCAGAACTTCCAAAAATTGTGATTTTTAGAAAATGTGATATTAAAAATTCAAATTTTGAAAGAAAACAAAAATTTTCGAAAGCTGAGAAATCTAGCAATTCTGAAAACCCAAAACTTTTCCAATAATCAAAAAATTCTGATTTTCTCAAAATCCTAAATTTTAAGAAAATCTGAAATATCTGAAAATCCAAAAAATTTAAGAAACCTGAAATTTCTAGAAATCCCAAATTTAGAAAAATCTAGAATTTTTGAAAATCAATAAATTTGGAAATTTCTAAAAATTCAAACATTTTGGAAAATCTATAATTTCCTAAAATCTAGAAAATTTAGAAATCTGATGTTTCTGAAAATCCAAAATTTCTAAAAATCAACTTTCCAACATTTAAACAAGAGTTTCGAATTTTCTGAAATTCTGGATTTTCAGACTTTTTTTTTTGAAATCTCTGAACCTTTAAAAAATGACGTGGCTTTTTTTTCACAATCTGTGTCCAATTATAGAATTTTCAATTCTTTTCTCAAAAACTAGACGGGGCAAAAATTTAAAATTCATGGTCCAAAAAAAAAAAGATTTGTCACTATGAATTTCGAATTCTGTGAGATTTTTGGCTCGGTTCCAGAAAAATGTTTTTGAAACTTTTTTTTGAAAAAAAAAATTTATCCTAAACCAAAAATCTTGAGACCACTTGAAAAGTTTCTTTTTTCGAAA</canonical>
            <polymorphic>ACTTTTTTTTGGATTTCCTGAAAAAGGAAAAAAATAGGGAGAACTTGAAAAGAAAATTATAGGTTTCGGGGACATTTTTAGGTAAAAAAGTGGAGTTTTTTTCTATTTTTAGAATCTTTTTTTTTGGGATTTTTTTTTCTGGAAAATTGGAAAAAATGTGTGTGGGAAGAAAAAAGGATAATCAATGAGGAAATGGATCAAATTAGGTCAGAAAAAGAGGAAAATATGAGTCTTTGGTCTGAAATTCTCATAGAAATTGTTTCAAAAAAACTGGAAAATTCAAATCTTGAAAATTCAGAACTTCCAAAAATTGTGATTTTTAGAAAATGTGATATTAAAAATTCAAATTTTGAAAGAAAACAAAAATTTTCGAAAGCTGAGAAATCTAGCAATTCTGAAAACCCAAAACTTTTCCAATAATCAAAAAATTCTGATTTTCTCAAAATCCTAAATTTTAAGAAAATCTGAAATATCTGAAAATCCAAAAAATTTAAGAAACYTGAAATTTCTAGAAATCCCAAATTTAGAAAAATCTAGAATTTTTGAAAATCAATAAATTTGGAAATTTCTAAAAATTCAAACATTTTGGAAAATCTATAATTTCCTAAAATCTAGAAAATTTAGAAATCTGATGTTTCTGAAAATCCAAAATTTCTAAAAATCAACTTTCCAACATTTAAACAAGAGTTTCGAATTTTCTGAAATTCTGGATTTTCAGACTTTTTTTTTTGAAATCTCTGAACCTTTAAAAAATGACGTGGCTTTTTTTTCACAATCTGTGTCCAATTATAGAATTTTCAATTCTTTTCTCAAAAACTAGACGGGGCAAAAATTTAAAATTCATGGTCCAAAAAAAAAAAGATTTGTCACTATGAATTTCGAATTCTGTGAGATTTTTGGCTCGGTTCCAGAAAAATGTTTTTGAAACTTTTTTTTGAAAAAAAAAATTTATCCTAAACCAAAAATCTTGAGACCACTTGAAAAGTTTCTTTTTTCGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAAACTTTTCCAATAATCAA</pcr_primer_p1>
		<pcr_primer_p2>TAAAGGTTCAGAGATTTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>346</pcr_amplicon_size>
		<canonical_amplicon>CCAAAACTTTTCCAATAATCAAAAAATTCTGATTTTCTCAAAATCCTAAATTTTAAGAAAATCTGAAATATCTGAAAATCCAAAAAATTTAAGAAACCTGAAATTTCTAGAAATCCCAAATTTAGAAAAATCTAGAATTTTTGAAAATCAATAAATTTGGAAATTTCTAAAAATTCAAACATTTTGGAAAATCTATAATTTCCTAAAATCTAGAAAATTTAGAAATCTGATGTTTCTGAAAATCCAAAATTTCTAAAAATCAACTTTCCAACATTTAAACAAGAGTTTCGAATTTTCTGAAATTCTGGATTTTCAGACTTTTTTTTTTGAAATCTCTGAACCTTTA</canonical_amplicon>
		<polymorphic_amplicon>CCAAAACTTTTCCAATAATCAAAAAATTCTGATTTTCTCAAAATCCTAAATTTTAAGAAAATCTGAAATATCTGAAAATCCAAAAAATTTAAGAAACYTGAAATTTCTAGAAATCCCAAATTTAGAAAAATCTAGAATTTTTGAAAATCAATAAATTTGGAAATTTCTAAAAATTCAAACATTTTGGAAAATCTATAATTTCCTAAAATCTAGAAAATTTAGAAATCTGATGTTTCTGAAAATCCAAAATTTCTAAAAATCAACTTTCCAACATTTAAACAAGAGTTTCGAATTTTCTGAAATTCTGGATTTTCAGACTTTTTTTTTTGAAATCTCTGAACCTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25064</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>328825</contig_pos>
        <strand></strand>
        <context>AAGTggtctg[A/C]taaatattta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACCGATTTCTACTTTTTTCAAAATTGAAACTTACTGGAAAAGTGGTCTG</left_flank>
        <right_flank>TAAATATTTAGCAGGCCAACGAGTCGCAGAGAAAGCTTTTGCAAAAAATT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCGAGACATGCTTTTCGCCAATAAGCCACGTCCCAAATTCGCCAAAAAGACGCAAGAGTCGGAGCAACTCAAGGTTCCAGGAGCACCATCTAAATAATTAGCTTTTTTTTTGCTTATTTTTAGCACATTTTTGTCATTTCCAGTGTTTTCTTGCCCCCGATTTTCTCTCTAATCATGTTTTTCTTTGTACTAGCTGTAAAAATCCCTTTTTCCTAGCGCGATTTTTTGTCAAAATTCTCATCTTGTTTTCTAGCCCCGCCCCTTTTTCCCGCCCCCGCTGTACAGATCTCTCCCTGTCTGTCTTTAAAAAAGAAGCATTTTCTGATTTATATATATTAAGCACCGTTTTCCCCTCTTTCCTCTGTATTCCAGATCATTGTATAAATTTTTGAAGGAATCCCTTTTTTTGCAAGTTTTAAAGCATTTCTCCGACGGTTTTATAAGAATTAACCGATTTCTACTTTTTTCAAAATTGAAACTTACTGGAAAAGTGGTCTGATAAATATTTAGCAGGCCAACGAGTCGCAGAGAAAGCTTTTGCAAAAAATTCTGAAAAATGGTCCAAATGTCATGTTTCTACGATGATTTTGAGAAAAGTTATGGAGGAAACGAAAATTTGGGTCTGCTAAATAGCAGGCCAAGGAGAGACGCAGAGAAACGAGAACATTGGTCTGCTAATGTTCGAATAGCAGGCTAATTCTCCTTTTTTCTCTGCGTCTCGTGGGTCTGCTAATGTTTTTGGCGTGCGAAATCATTAGCAGGCCCACGGGGCATGGGTCTGCTAATATTTTGAAAAGACGCAGAGAAACGAGAGCATTGGTCTGCTGAATATTTAGAAACATTAGCAGACCACTTTTTCTCTGCGTCTCGTGTTTTTGGCACGCGAAACATTAGCAGACCCACGGGGCATGGGTCTGCTAATGTTGTGAAGAGACGCTGAGAAACGATAGCATTGGTCTGCTAATGTTTTAAGTGCGCGGAAAACATTAGCAGACCACT</canonical>
            <polymorphic>CCCGAGACATGCTTTTCGCCAATAAGCCACGTCCCAAATTCGCCAAAAAGACGCAAGAGTCGGAGCAACTCAAGGTTCCAGGAGCACCATCTAAATAATTAGCTTTTTTTTTGCTTATTTTTAGCACATTTTTGTCATTTCCAGTGTTTTCTTGCCCCCGATTTTCTCTCTAATCATGTTTTTCTTTGTACTAGCTGTAAAAATCCCTTTTTCCTAGCGCGATTTTTTGTCAAAATTCTCATCTTGTTTTCTAGCCCCGCCCCTTTTTCCCGCCCCCGCTGTACAGATCTCTCCCTGTCTGTCTTTAAAAAAGAAGCATTTTCTGATTTATATATATTAAGCACCGTTTTCCCCTCTTTCCTCTGTATTCCAGATCATTGTATAAATTTTTGAAGGAATCCCTTTTTTTGCAAGTTTTAAAGCATTTCTCCGACGGTTTTATAAGAATTAACCGATTTCTACTTTTTTCAAAATTGAAACTTACTGGAAAAGTGGTCTGMTAAATATTTAGCAGGCCAACGAGTCGCAGAGAAAGCTTTTGCAAAAAATTCTGAAAAATGGTCCAAATGTCATGTTTCTACGATGATTTTGAGAAAAGTTATGGAGGAAACGAAAATTTGGGTCTGCTAAATAGCAGGCCAAGGAGAGACGCAGAGAAACGAGAACATTGGTCTGCTAATGTTCGAATAGCAGGCTAATTCTCCTTTTTTCTCTGCGTCTCGTGGGTCTGCTAATGTTTTTGGCGTGCGAAATCATTAGCAGGCCCACGGGGCATGGGTCTGCTAATATTTTGAAAAGACGCAGAGAAACGAGAGCATTGGTCTGCTGAATATTTAGAAACATTAGCAGACCACTTTTTCTCTGCGTCTCGTGTTTTTGGCACGCGAAACATTAGCAGACCCACGGGGCATGGGTCTGCTAATGTTGTGAAGAGACGCTGAGAAACGATAGCATTGGTCTGCTAATGTTTTAAGTGCGCGGAAAACATTAGCAGACCACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>448 262 107 67 62 54</canonical_bands>
                <polymorphic_bands>448 262 121 107 62</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAATTAACCGATTTCTACTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTCTCTTCACAACATTAGCAGAC</pcr_primer_p2>
		<pcr_amplicon_size>494</pcr_amplicon_size>
		<canonical_amplicon>AAGAATTAACCGATTTCTACTTTTTTCAAAATTGAAACTTACTGGAAAAGTGGTCTGATAAATATTTAGCAGGCCAACGAGTCGCAGAGAAAGCTTTTGCAAAAAATTCTGAAAAATGGTCCAAATGTCATGTTTCTACGATGATTTTGAGAAAAGTTATGGAGGAAACGAAAATTTGGGTCTGCTAAATAGCAGGCCAAGGAGAGACGCAGAGAAACGAGAACATTGGTCTGCTAATGTTCGAATAGCAGGCTAATTCTCCTTTTTTCTCTGCGTCTCGTGGGTCTGCTAATGTTTTTGGCGTGCGAAATCATTAGCAGGCCCACGGGGCATGGGTCTGCTAATATTTTGAAAAGACGCAGAGAAACGAGAGCATTGGTCTGCTGAATATTTAGAAACATTAGCAGACCACTTTTTCTCTGCGTCTCGTGTTTTTGGCACGCGAAACATTAGCAGACCCACGGGGCATGGGTCTGCTAATGTTGTGAAGAGAC</canonical_amplicon>
		<polymorphic_amplicon>AAGAATTAACCGATTTCTACTTTTTTCAAAATTGAAACTTACTGGAAAAGTGGTCTGMTAAATATTTAGCAGGCCAACGAGTCGCAGAGAAAGCTTTTGCAAAAAATTCTGAAAAATGGTCCAAATGTCATGTTTCTACGATGATTTTGAGAAAAGTTATGGAGGAAACGAAAATTTGGGTCTGCTAAATAGCAGGCCAAGGAGAGACGCAGAGAAACGAGAACATTGGTCTGCTAATGTTCGAATAGCAGGCTAATTCTCCTTTTTTCTCTGCGTCTCGTGGGTCTGCTAATGTTTTTGGCGTGCGAAATCATTAGCAGGCCCACGGGGCATGGGTCTGCTAATATTTTGAAAAGACGCAGAGAAACGAGAGCATTGGTCTGCTGAATATTTAGAAACATTAGCAGACCACTTTTTCTCTGCGTCTCGTGTTTTTGGCACGCGAAACATTAGCAGACCCACGGGGCATGGGTCTGCTAATGTTGTGAAGAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25065</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>367729</contig_pos>
        <strand></strand>
        <context>acgagacgca[G/A]agaawgagat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAAATAGCTAGCAGGCCAATGCCGCAACATTAGCAGACCAACGAGACGCA</left_flank>
        <right_flank>AGAATGAGATGGAGCGTTGGCTTGCTAGCTATTTAGCAGACCAATGATCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAAAAAAAAACCAAGATTTTTTCGAGTTAGCAAAATTAAAACAGCTATATCTTAAAAACTCGTAAAGCCTGCAAAATTTTGTCAACCATAAAAATGTGTAGCTTGAAATTTTACATATAATATTAGTTGACAACTTTTTTCTAGCTACCGTAGTTTTTGAGTTATGCGCCTTTAAAGTTTGCATGCATACGCGTTGGCCTGCTAAATAGCTAGCAGGCCAATGCCGCAACATTAGCAGACCAACGAGACGCAAAGAAAGAGATGGAGCGTTGGCTTGCTTGCTATTTAGCAGACCAATGCTCTCGTTTCTCTGCGTCTCTTTGGGTCTGCTAGCTATTTAGCAGACCCATTTAAGCGTGCAATCTTAAATTGCATGCATAAGCGTTGGCCTGCTAAATAGCTAGCAGGCCAATTCTGTCTCGCTTCTCTGCGTCTCTTTGGGTCTGCTAAATAGCTAGCAGGCCAATGCCGCAACATTAGCAGACCAACGAGACGCAGAGAATGAGATGGAGCGTTGGCTTGCTAGCTATTTAGCAGACCAATGATCTCGTTTCTCTGCGTCTCTTTGGGTCTGCTAGCTATTTAGCAGACCAATTTAAAGCAATCTTAAAACGCTGCTATCTCCAAAACTACGGTAGCTAGAAAAAGTTGTCAACTACAAAAATGTGTAAACTTTTACGCTCTACAATTTTGATAAAATTTCGCTAGCTTTTCAGGTTTTTGAGATAGAGCGCGTTTTCCTCAGGTTTGGATGTCGTAAAAGCTGGCGCCAACTTCAAAAGCGCATATCTTAAAAACTACGGTAGCTAGGAAAATATTGTCAACTACAAAAATATAGCTCTAGCTTTGTTTTATGTATTTTCCTGTTTCAAAAAGGTCCGGGAAGCTTTTAGCTGGATTTTCAGAGCCATCTGACACTTGACACTAAAAACTAAACTAAACTAAAAAAACTAGAGAGAGCATAAGAACAAACCCCCTTAGCTATAAAAAATTTATGC</canonical>
            <polymorphic>AACAAAAAAAAACCAAGATTTTTTCGAGTTAGCAAAATTAAAACAGCTATATCTTAAAAACTCGTAAAGCCTGCAAAATTTTGTCAACCATAAAAATGTGTAGCTTGAAATTTTACATATAATATTAGTTGACAACTTTTTTCTAGCTACCGTAGTTTTTGAGTTATGCGCCTTTAAAGTTTGCATGCATACGCGTTGGCCTGCTAAATAGCTAGCAGGCCAATGCCGCAACATTAGCAGACCAACGAGACGCAAAGAAAGAGATGGAGCGTTGGCTTGCTTGCTATTTAGCAGACCAATGCTCTCGTTTCTCTGCGTCTCTTTGGGTCTGCTAGCTATTTAGCAGACCCATTTAAGCGTGCAATCTTAAATTGCATGCATAAGCGTTGGCCTGCTAAATAGCTAGCAGGCCAATTCTGTCTCGCTTCTCTGCGTCTCTTTGGGTCTGCTAAATAGCTAGCAGGCCAATGCCGCAACATTAGCAGACCAACGAGACGCARAGAATGAGATGGAGCGTTGGCTTGCTAGCTATTTAGCAGACCAATGATCTCGTTTCTCTGCGTCTCTTTGGGTCTGCTAGCTATTTAGCAGACCAATTTAAAGCAATCTTAAAACGCTGCTATCTCCAAAACTACGGTAGCTAGAAAAAGTTGTCAACTACAAAAATGTGTAAACTTTTACGCTCTACAATTTTGATAAAATTTCGCTAGCTTTTCAGGTTTTTGAGATAGAGCGCGTTTTCCTCAGGTTTGGATGTCGTAAAAGCTGGCGCCAACTTCAAAAGCGCATATCTTAAAAACTACGGTAGCTAGGAAAATATTGTCAACTACAAAAATATAGCTCTAGCTTTGTTTTATGTATTTTCCTGTTTCAAAAAGGTCCGGGAAGCTTTTAGCTGGATTTTCAGAGCCATCTGACACTTGACACTAAAAACTAAACTAAACTAAAAAAACTAGAGAGAGCATAAGAACAAACCCCCTTAGCTATAAAAAATTTATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGTTATGAGGAAAACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTAGTGTCAAGTGTCAGATG</pcr_primer_p2>
		<pcr_amplicon_size>948</pcr_amplicon_size>
		<canonical_amplicon>AGAGAATGAGATGGAGCGTTGGCTTGCTAGCTATTTAGCAGACCAATGATCTCGTTTCTCTGCGTCTCTTTGGGTCTGCTAGCTATTTAGCAGACCAATTTAAAGCAATCTTAAAACGCTGCTATCTCCAAAACTACGGTAGCTAGAAAAAGTTGTCAACTACAAAAATGTGTAAACTTTTACGCTCTACAATTTTGATAAAATTTCGCTAGCTTTTCAGGTTTTTGAGATAGAGCGCGTTTTCCTCAGGTTTGGATGTCGTAAAAGCTGGCGCCAACTTCAAAAGCGCATATCTTAAAAACTACGGTAGCTAGGAAAATATTGTCAACTACAAAAATATAGCTCTAGCTTTGTTTTATGTATTTTCCTGTTTCAAAAAGGTCCGGGAAGCTTTTAGCTGGATTTTCAGAGCCATCTGACACTTGACACTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ARAGAATGAGATGGAGCGTTGGCTTGCTAGCTATTTAGCAGACCAATGATCTCGTTTCTCTGCGTCTCTTTGGGTCTGCTAGCTATTTAGCAGACCAATTTAAAGCAATCTTAAAACGCTGCTATCTCCAAAACTACGGTAGCTAGAAAAAGTTGTCAACTACAAAAATGTGTAAACTTTTACGCTCTACAATTTTGATAAAATTTCGCTAGCTTTTCAGGTTTTTGAGATAGAGCGCGTTTTCCTCAGGTTTGGATGTCGTAAAAGCTGGCGCCAACTTCAAAAGCGCATATCTTAAAAACTACGGTAGCTAGGAAAATATTGTCAACTACAAAAATATAGCTCTAGCTTTGTTTTATGTATTTTCCTGTTTCAAAAAGGTCCGGGAAGCTTTTAGCTGGATTTTCAGAGCCATCTGACACTTGACACTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25066</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>367734</contig_pos>
        <strand></strand>
        <context>acgcaragaa[T/A]gagatggagc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGCTAGCAGGCCAATGCCGCAACATTAGCAGACCAACGAGACGCAGAGAA</left_flank>
        <right_flank>GAGATGGAGCGTTGGCTTGCTAGCTATTTAGCAGACCAATGATCTCGTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAACCAAGATTTTTTCGAGTTAGCAAAATTAAAACAGCTATATCTTAAAAACTCGTAAAGCCTGCAAAATTTTGTCAACCATAAAAATGTGTAGCTTGAAATTTTACATATAATATTAGTTGACAACTTTTTTCTAGCTACCGTAGTTTTTGAGTTATGCGCCTTTAAAGTTTGCATGCATACGCGTTGGCCTGCTAAATAGCTAGCAGGCCAATGCCGCAACATTAGCAGACCAACGAGACGCAAAGAAAGAGATGGAGCGTTGGCTTGCTTGCTATTTAGCAGACCAATGCTCTCGTTTCTCTGCGTCTCTTTGGGTCTGCTAGCTATTTAGCAGACCCATTTAAGCGTGCAATCTTAAATTGCATGCATAAGCGTTGGCCTGCTAAATAGCTAGCAGGCCAATTCTGTCTCGCTTCTCTGCGTCTCTTTGGGTCTGCTAAATAGCTAGCAGGCCAATGCCGCAACATTAGCAGACCAACGAGACGCAGAGAATGAGATGGAGCGTTGGCTTGCTAGCTATTTAGCAGACCAATGATCTCGTTTCTCTGCGTCTCTTTGGGTCTGCTAGCTATTTAGCAGACCAATTTAAAGCAATCTTAAAACGCTGCTATCTCCAAAACTACGGTAGCTAGAAAAAGTTGTCAACTACAAAAATGTGTAAACTTTTACGCTCTACAATTTTGATAAAATTTCGCTAGCTTTTCAGGTTTTTGAGATAGAGCGCGTTTTCCTCAGGTTTGGATGTCGTAAAAGCTGGCGCCAACTTCAAAAGCGCATATCTTAAAAACTACGGTAGCTAGGAAAATATTGTCAACTACAAAAATATAGCTCTAGCTTTGTTTTATGTATTTTCCTGTTTCAAAAAGGTCCGGGAAGCTTTTAGCTGGATTTTCAGAGCCATCTGACACTTGACACTAAAAACTAAACTAAACTAAAAAAACTAGAGAGAGCATAAGAACAAACCCCCTTAGCTATAAAAAATTTATGCTCTTT</canonical>
            <polymorphic>AAAAAAACCAAGATTTTTTCGAGTTAGCAAAATTAAAACAGCTATATCTTAAAAACTCGTAAAGCCTGCAAAATTTTGTCAACCATAAAAATGTGTAGCTTGAAATTTTACATATAATATTAGTTGACAACTTTTTTCTAGCTACCGTAGTTTTTGAGTTATGCGCCTTTAAAGTTTGCATGCATACGCGTTGGCCTGCTAAATAGCTAGCAGGCCAATGCCGCAACATTAGCAGACCAACGAGACGCAAAGAAAGAGATGGAGCGTTGGCTTGCTTGCTATTTAGCAGACCAATGCTCTCGTTTCTCTGCGTCTCTTTGGGTCTGCTAGCTATTTAGCAGACCCATTTAAGCGTGCAATCTTAAATTGCATGCATAAGCGTTGGCCTGCTAAATAGCTAGCAGGCCAATTCTGTCTCGCTTCTCTGCGTCTCTTTGGGTCTGCTAAATAGCTAGCAGGCCAATGCCGCAACATTAGCAGACCAACGAGACGCAGAGAAWGAGATGGAGCGTTGGCTTGCTAGCTATTTAGCAGACCAATGATCTCGTTTCTCTGCGTCTCTTTGGGTCTGCTAGCTATTTAGCAGACCAATTTAAAGCAATCTTAAAACGCTGCTATCTCCAAAACTACGGTAGCTAGAAAAAGTTGTCAACTACAAAAATGTGTAAACTTTTACGCTCTACAATTTTGATAAAATTTCGCTAGCTTTTCAGGTTTTTGAGATAGAGCGCGTTTTCCTCAGGTTTGGATGTCGTAAAAGCTGGCGCCAACTTCAAAAGCGCATATCTTAAAAACTACGGTAGCTAGGAAAATATTGTCAACTACAAAAATATAGCTCTAGCTTTGTTTTATGTATTTTCCTGTTTCAAAAAGGTCCGGGAAGCTTTTAGCTGGATTTTCAGAGCCATCTGACACTTGACACTAAAAACTAAACTAAACTAAAAAAACTAGAGAGAGCATAAGAACAAACCCCCTTAGCTATAAAAAATTTATGCTCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGTTATGAGGAAAACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTAGTGTCAAGTGTCAGATG</pcr_primer_p2>
		<pcr_amplicon_size>948</pcr_amplicon_size>
		<canonical_amplicon>ATGAGATGGAGCGTTGGCTTGCTAGCTATTTAGCAGACCAATGATCTCGTTTCTCTGCGTCTCTTTGGGTCTGCTAGCTATTTAGCAGACCAATTTAAAGCAATCTTAAAACGCTGCTATCTCCAAAACTACGGTAGCTAGAAAAAGTTGTCAACTACAAAAATGTGTAAACTTTTACGCTCTACAATTTTGATAAAATTTCGCTAGCTTTTCAGGTTTTTGAGATAGAGCGCGTTTTCCTCAGGTTTGGATGTCGTAAAAGCTGGCGCCAACTTCAAAAGCGCATATCTTAAAAACTACGGTAGCTAGGAAAATATTGTCAACTACAAAAATATAGCTCTAGCTTTGTTTTATGTATTTTCCTGTTTCAAAAAGGTCCGGGAAGCTTTTAGCTGGATTTTCAGAGCCATCTGACACTTGACACTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AWGAGATGGAGCGTTGGCTTGCTAGCTATTTAGCAGACCAATGATCTCGTTTCTCTGCGTCTCTTTGGGTCTGCTAGCTATTTAGCAGACCAATTTAAAGCAATCTTAAAACGCTGCTATCTCCAAAACTACGGTAGCTAGAAAAAGTTGTCAACTACAAAAATGTGTAAACTTTTACGCTCTACAATTTTGATAAAATTTCGCTAGCTTTTCAGGTTTTTGAGATAGAGCGCGTTTTCCTCAGGTTTGGATGTCGTAAAAGCTGGCGCCAACTTCAAAAGCGCATATCTTAAAAACTACGGTAGCTAGGAAAATATTGTCAACTACAAAAATATAGCTCTAGCTTTGTTTTATGTATTTTCCTGTTTCAAAAAGGTCCGGGAAGCTTTTAGCTGGATTTTCAGAGCCATCTGACACTTGACACTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25067</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>367776</contig_pos>
        <strand></strand>
        <context>cagaccaatg[A/C]tctcgtttct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCAGAGAATGAGATGGAGCGTTGGCTTGCTAGCTATTTAGCAGACCAATG</left_flank>
        <right_flank>TCTCGTTTCTCTGCGTCTCTTTGGGTCTGCTAGCTATTTAGCAGACCAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATATCTTAAAAACTCGTAAAGCCTGCAAAATTTTGTCAACCATAAAAATGTGTAGCTTGAAATTTTACATATAATATTAGTTGACAACTTTTTTCTAGCTACCGTAGTTTTTGAGTTATGCGCCTTTAAAGTTTGCATGCATACGCGTTGGCCTGCTAAATAGCTAGCAGGCCAATGCCGCAACATTAGCAGACCAACGAGACGCAAAGAAAGAGATGGAGCGTTGGCTTGCTTGCTATTTAGCAGACCAATGCTCTCGTTTCTCTGCGTCTCTTTGGGTCTGCTAGCTATTTAGCAGACCCATTTAAGCGTGCAATCTTAAATTGCATGCATAAGCGTTGGCCTGCTAAATAGCTAGCAGGCCAATTCTGTCTCGCTTCTCTGCGTCTCTTTGGGTCTGCTAAATAGCTAGCAGGCCAATGCCGCAACATTAGCAGACCAACGAGACGCAGAGAATGAGATGGAGCGTTGGCTTGCTAGCTATTTAGCAGACCAATGATCTCGTTTCTCTGCGTCTCTTTGGGTCTGCTAGCTATTTAGCAGACCAATTTAAAGCAATCTTAAAACGCTGCTATCTCCAAAACTACGGTAGCTAGAAAAAGTTGTCAACTACAAAAATGTGTAAACTTTTACGCTCTACAATTTTGATAAAATTTCGCTAGCTTTTCAGGTTTTTGAGATAGAGCGCGTTTTCCTCAGGTTTGGATGTCGTAAAAGCTGGCGCCAACTTCAAAAGCGCATATCTTAAAAACTACGGTAGCTAGGAAAATATTGTCAACTACAAAAATATAGCTCTAGCTTTGTTTTATGTATTTTCCTGTTTCAAAAAGGTCCGGGAAGCTTTTAGCTGGATTTTCAGAGCCATCTGACACTTGACACTAAAAACTAAACTAAACTAAAAAAACTAGAGAGAGCATAAGAACAAACCCCCTTAGCTATAAAAAATTTATGCTCTTTTTCTTCTGCTCTTCTTTGTGGTTCTCCATTCTCTTTTTTATT</canonical>
            <polymorphic>TATATCTTAAAAACTCGTAAAGCCTGCAAAATTTTGTCAACCATAAAAATGTGTAGCTTGAAATTTTACATATAATATTAGTTGACAACTTTTTTCTAGCTACCGTAGTTTTTGAGTTATGCGCCTTTAAAGTTTGCATGCATACGCGTTGGCCTGCTAAATAGCTAGCAGGCCAATGCCGCAACATTAGCAGACCAACGAGACGCAAAGAAAGAGATGGAGCGTTGGCTTGCTTGCTATTTAGCAGACCAATGCTCTCGTTTCTCTGCGTCTCTTTGGGTCTGCTAGCTATTTAGCAGACCCATTTAAGCGTGCAATCTTAAATTGCATGCATAAGCGTTGGCCTGCTAAATAGCTAGCAGGCCAATTCTGTCTCGCTTCTCTGCGTCTCTTTGGGTCTGCTAAATAGCTAGCAGGCCAATGCCGCAACATTAGCAGACCAACGAGACGCAGAGAATGAGATGGAGCGTTGGCTTGCTAGCTATTTAGCAGACCAATGMTCTCGTTTCTCTGCGTCTCTTTGGGTCTGCTAGCTATTTAGCAGACCAATTTAAAGCAATCTTAAAACGCTGCTATCTCCAAAACTACGGTAGCTAGAAAAAGTTGTCAACTACAAAAATGTGTAAACTTTTACGCTCTACAATTTTGATAAAATTTCGCTAGCTTTTCAGGTTTTTGAGATAGAGCGCGTTTTCCTCAGGTTTGGATGTCGTAAAAGCTGGCGCCAACTTCAAAAGCGCATATCTTAAAAACTACGGTAGCTAGGAAAATATTGTCAACTACAAAAATATAGCTCTAGCTTTGTTTTATGTATTTTCCTGTTTCAAAAAGGTCCGGGAAGCTTTTAGCTGGATTTTCAGAGCCATCTGACACTTGACACTAAAAACTAAACTAAACTAAAAAAACTAGAGAGAGCATAAGAACAAACCCCCTTAGCTATAAAAAATTTATGCTCTTTTTCTTCTGCTCTTCTTTGTGGTTCTCCATTCTCTTTTTTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAGTTATGAGGAAAACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTAGTGTCAAGTGTCAGATG</pcr_primer_p2>
		<pcr_amplicon_size>948</pcr_amplicon_size>
		<canonical_amplicon>GATCTCGTTTCTCTGCGTCTCTTTGGGTCTGCTAGCTATTTAGCAGACCAATTTAAAGCAATCTTAAAACGCTGCTATCTCCAAAACTACGGTAGCTAGAAAAAGTTGTCAACTACAAAAATGTGTAAACTTTTACGCTCTACAATTTTGATAAAATTTCGCTAGCTTTTCAGGTTTTTGAGATAGAGCGCGTTTTCCTCAGGTTTGGATGTCGTAAAAGCTGGCGCCAACTTCAAAAGCGCATATCTTAAAAACTACGGTAGCTAGGAAAATATTGTCAACTACAAAAATATAGCTCTAGCTTTGTTTTATGTATTTTCCTGTTTCAAAAAGGTCCGGGAAGCTTTTAGCTGGATTTTCAGAGCCATCTGACACTTGACACTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GMTCTCGTTTCTCTGCGTCTCTTTGGGTCTGCTAGCTATTTAGCAGACCAATTTAAAGCAATCTTAAAACGCTGCTATCTCCAAAACTACGGTAGCTAGAAAAAGTTGTCAACTACAAAAATGTGTAAACTTTTACGCTCTACAATTTTGATAAAATTTCGCTAGCTTTTCAGGTTTTTGAGATAGAGCGCGTTTTCCTCAGGTTTGGATGTCGTAAAAGCTGGCGCCAACTTCAAAAGCGCATATCTTAAAAACTACGGTAGCTAGGAAAATATTGTCAACTACAAAAATATAGCTCTAGCTTTGTTTTATGTATTTTCCTGTTTCAAAAAGGTCCGGGAAGCTTTTAGCTGGATTTTCAGAGCCATCTGACACTTGACACTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25068</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>368002</contig_pos>
        <strand></strand>
        <context>aagctggcgc[C/T]aacttcaaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGAGATAGAGCGCGTTTTCCTCAGGTTTGGATGTCGTAAAAGCTGGCGC</left_flank>
        <right_flank>AACTTCAAAAGCGCATATCTTAAAAACTACGGTAGCTAGGAAAATATTGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCTTGCTTGCTATTTAGCAGACCAATGCTCTCGTTTCTCTGCGTCTCTTTGGGTCTGCTAGCTATTTAGCAGACCCATTTAAGCGTGCAATCTTAAATTGCATGCATAAGCGTTGGCCTGCTAAATAGCTAGCAGGCCAATTCTGTCTCGCTTCTCTGCGTCTCTTTGGGTCTGCTAAATAGCTAGCAGGCCAATGCCGCAACATTAGCAGACCAACGAGACGCAGAGAATGAGATGGAGCGTTGGCTTGCTAGCTATTTAGCAGACCAATGATCTCGTTTCTCTGCGTCTCTTTGGGTCTGCTAGCTATTTAGCAGACCAATTTAAAGCAATCTTAAAACGCTGCTATCTCCAAAACTACGGTAGCTAGAAAAAGTTGTCAACTACAAAAATGTGTAAACTTTTACGCTCTACAATTTTGATAAAATTTCGCTAGCTTTTCAGGTTTTTGAGATAGAGCGCGTTTTCCTCAGGTTTGGATGTCGTAAAAGCTGGCGCCAACTTCAAAAGCGCATATCTTAAAAACTACGGTAGCTAGGAAAATATTGTCAACTACAAAAATATAGCTCTAGCTTTGTTTTATGTATTTTCCTGTTTCAAAAAGGTCCGGGAAGCTTTTAGCTGGATTTTCAGAGCCATCTGACACTTGACACTAAAAACTAAACTAAACTAAAAAAACTAGAGAGAGCATAAGAACAAACCCCCTTAGCTATAAAAAATTTATGCTCTTTTTCTTCTGCTCTTCTTTGTGGTTCTCCATTCTCTTTTTTATTTTCTTATCTCTTTTTTTTCTGAAAAAAAGTGTTTTTTGGCATTTTGTACGTCATAAAAACGAAAAAACGCCGGGATGGGAACAAAGTGGTGGTGTTCCTCGTTTAACACGAAATTTGAGATTTTTAAACCGGTCCAGTACATATTTTTAAAGAAAAATTGAGCTAAAATTTTCGATCCAAAAAAAATTTTTTTTCAAAATGTTTTTTTCCTGAATAACATAGTTTT</canonical>
            <polymorphic>GGCTTGCTTGCTATTTAGCAGACCAATGCTCTCGTTTCTCTGCGTCTCTTTGGGTCTGCTAGCTATTTAGCAGACCCATTTAAGCGTGCAATCTTAAATTGCATGCATAAGCGTTGGCCTGCTAAATAGCTAGCAGGCCAATTCTGTCTCGCTTCTCTGCGTCTCTTTGGGTCTGCTAAATAGCTAGCAGGCCAATGCCGCAACATTAGCAGACCAACGAGACGCAGAGAATGAGATGGAGCGTTGGCTTGCTAGCTATTTAGCAGACCAATGATCTCGTTTCTCTGCGTCTCTTTGGGTCTGCTAGCTATTTAGCAGACCAATTTAAAGCAATCTTAAAACGCTGCTATCTCCAAAACTACGGTAGCTAGAAAAAGTTGTCAACTACAAAAATGTGTAAACTTTTACGCTCTACAATTTTGATAAAATTTCGCTAGCTTTTCAGGTTTTTGAGATAGAGCGCGTTTTCCTCAGGTTTGGATGTCGTAAAAGCTGGCGCYAACTTCAAAAGCGCATATCTTAAAAACTACGGTAGCTAGGAAAATATTGTCAACTACAAAAATATAGCTCTAGCTTTGTTTTATGTATTTTCCTGTTTCAAAAAGGTCCGGGAAGCTTTTAGCTGGATTTTCAGAGCCATCTGACACTTGACACTAAAAACTAAACTAAACTAAAAAAACTAGAGAGAGCATAAGAACAAACCCCCTTAGCTATAAAAAATTTATGCTCTTTTTCTTCTGCTCTTCTTTGTGGTTCTCCATTCTCTTTTTTATTTTCTTATCTCTTTTTTTTCTGAAAAAAAGTGTTTTTTGGCATTTTGTACGTCATAAAAACGAAAAAACGCCGGGATGGGAACAAAGTGGTGGTGTTCCTCGTTTAACACGAAATTTGAGATTTTTAAACCGGTCCAGTACATATTTTTAAAGAAAAATTGAGCTAAAATTTTCGATCCAAAAAAAATTTTTTTTCAAAATGTTTTTTTCCTGAATAACATAGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCGCC</site>
                <isoschizomers>
                    <enzyme>BbeI</enzyme>
                    <enzyme>EgeI</enzyme>
                    <enzyme>EheI</enzyme>
                    <enzyme>KasI</enzyme>
                    <enzyme>Mly113I</enzyme>
                    <enzyme>NarI</enzyme>
                    <enzyme>SfoI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAGTTATGAGGAAAACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTAGTGTCAAGTGTCAGATG</pcr_primer_p2>
		<pcr_amplicon_size>948</pcr_amplicon_size>
		<canonical_amplicon>CCAACTTCAAAAGCGCATATCTTAAAAACTACGGTAGCTAGGAAAATATTGTCAACTACAAAAATATAGCTCTAGCTTTGTTTTATGTATTTTCCTGTTTCAAAAAGGTCCGGGAAGCTTTTAGCTGGATTTTCAGAGCCATCTGACACTTGACACTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CYAACTTCAAAAGCGCATATCTTAAAAACTACGGTAGCTAGGAAAATATTGTCAACTACAAAAATATAGCTCTAGCTTTGTTTTATGTATTTTCCTGTTTCAAAAAGGTCCGGGAAGCTTTTAGCTGGATTTTCAGAGCCATCTGACACTTGACACTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25069</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>368023</contig_pos>
        <strand></strand>
        <context>gcgcatatct[T/C]aaaaactacg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCAGGTTTGGATGTCGTAAAAGCTGGCGCCAACTTCAAAAGCGCATATCT</left_flank>
        <right_flank>AAAAACTACGGTAGCTAGGAAAATATTGTCAACTACAAAAATATAGCTCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCAATGCTCTCGTTTCTCTGCGTCTCTTTGGGTCTGCTAGCTATTTAGCAGACCCATTTAAGCGTGCAATCTTAAATTGCATGCATAAGCGTTGGCCTGCTAAATAGCTAGCAGGCCAATTCTGTCTCGCTTCTCTGCGTCTCTTTGGGTCTGCTAAATAGCTAGCAGGCCAATGCCGCAACATTAGCAGACCAACGAGACGCAGAGAATGAGATGGAGCGTTGGCTTGCTAGCTATTTAGCAGACCAATGATCTCGTTTCTCTGCGTCTCTTTGGGTCTGCTAGCTATTTAGCAGACCAATTTAAAGCAATCTTAAAACGCTGCTATCTCCAAAACTACGGTAGCTAGAAAAAGTTGTCAACTACAAAAATGTGTAAACTTTTACGCTCTACAATTTTGATAAAATTTCGCTAGCTTTTCAGGTTTTTGAGATAGAGCGCGTTTTCCTCAGGTTTGGATGTCGTAAAAGCTGGCGCCAACTTCAAAAGCGCATATCTTAAAAACTACGGTAGCTAGGAAAATATTGTCAACTACAAAAATATAGCTCTAGCTTTGTTTTATGTATTTTCCTGTTTCAAAAAGGTCCGGGAAGCTTTTAGCTGGATTTTCAGAGCCATCTGACACTTGACACTAAAAACTAAACTAAACTAAAAAAACTAGAGAGAGCATAAGAACAAACCCCCTTAGCTATAAAAAATTTATGCTCTTTTTCTTCTGCTCTTCTTTGTGGTTCTCCATTCTCTTTTTTATTTTCTTATCTCTTTTTTTTCTGAAAAAAAGTGTTTTTTGGCATTTTGTACGTCATAAAAACGAAAAAACGCCGGGATGGGAACAAAGTGGTGGTGTTCCTCGTTTAACACGAAATTTGAGATTTTTAAACCGGTCCAGTACATATTTTTAAAGAAAAATTGAGCTAAAATTTTCGATCCAAAAAAAATTTTTTTTCAAAATGTTTTTTTCCTGAATAACATAGTTTTATGTACATTTTCAGTCTTCGA</canonical>
            <polymorphic>ACCAATGCTCTCGTTTCTCTGCGTCTCTTTGGGTCTGCTAGCTATTTAGCAGACCCATTTAAGCGTGCAATCTTAAATTGCATGCATAAGCGTTGGCCTGCTAAATAGCTAGCAGGCCAATTCTGTCTCGCTTCTCTGCGTCTCTTTGGGTCTGCTAAATAGCTAGCAGGCCAATGCCGCAACATTAGCAGACCAACGAGACGCAGAGAATGAGATGGAGCGTTGGCTTGCTAGCTATTTAGCAGACCAATGATCTCGTTTCTCTGCGTCTCTTTGGGTCTGCTAGCTATTTAGCAGACCAATTTAAAGCAATCTTAAAACGCTGCTATCTCCAAAACTACGGTAGCTAGAAAAAGTTGTCAACTACAAAAATGTGTAAACTTTTACGCTCTACAATTTTGATAAAATTTCGCTAGCTTTTCAGGTTTTTGAGATAGAGCGCGTTTTCCTCAGGTTTGGATGTCGTAAAAGCTGGCGCCAACTTCAAAAGCGCATATCTYAAAAACTACGGTAGCTAGGAAAATATTGTCAACTACAAAAATATAGCTCTAGCTTTGTTTTATGTATTTTCCTGTTTCAAAAAGGTCCGGGAAGCTTTTAGCTGGATTTTCAGAGCCATCTGACACTTGACACTAAAAACTAAACTAAACTAAAAAAACTAGAGAGAGCATAAGAACAAACCCCCTTAGCTATAAAAAATTTATGCTCTTTTTCTTCTGCTCTTCTTTGTGGTTCTCCATTCTCTTTTTTATTTTCTTATCTCTTTTTTTTCTGAAAAAAAGTGTTTTTTGGCATTTTGTACGTCATAAAAACGAAAAAACGCCGGGATGGGAACAAAGTGGTGGTGTTCCTCGTTTAACACGAAATTTGAGATTTTTAAACCGGTCCAGTACATATTTTTAAAGAAAAATTGAGCTAAAATTTTCGATCCAAAAAAAATTTTTTTTCAAAATGTTTTTTTCCTGAATAACATAGTTTTATGTACATTTTCAGTCTTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>357 231 184 100 59 23 21 14 11</canonical_bands>
                <polymorphic_bands>541 231 100 59 23 21 14 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAGTTATGAGGAAAACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTAGTGTCAAGTGTCAGATG</pcr_primer_p2>
		<pcr_amplicon_size>948</pcr_amplicon_size>
		<canonical_amplicon>TTAAAAACTACGGTAGCTAGGAAAATATTGTCAACTACAAAAATATAGCTCTAGCTTTGTTTTATGTATTTTCCTGTTTCAAAAAGGTCCGGGAAGCTTTTAGCTGGATTTTCAGAGCCATCTGACACTTGACACTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TYAAAAACTACGGTAGCTAGGAAAATATTGTCAACTACAAAAATATAGCTCTAGCTTTGTTTTATGTATTTTCCTGTTTCAAAAAGGTCCGGGAAGCTTTTAGCTGGATTTTCAGAGCCATCTGACACTTGACACTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25070</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>372616</contig_pos>
        <strand>+</strand>
        <context>TTTTGGTGCT[G/T]GTTAATAATG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCAATTTGTCTTTTTGGTGTCGTTGGAAATGCGTTGACCATTTTGGTGCT</left_flank>
        <right_flank>GTTAATAATGATTTTATGTCCAGGTGAGCAGTTTTGAAAGAAAAAAAAGT</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATCATCCGATTGCGATAAAAATTGATATCACGATTTGAAATGCCATAAAAAACACTAAGTTGGAACAAAATTCAAAAAATTTAAAAATTAAAAAAAATTTTTTCAATTTTTAGAAATTCCAGTTTTTTTTTCTTTTAATCTGTTTGTCCAGATATCCACTTCTACATCTTCTTTTTCTTCTTCTTCTTCTTCATTCTCTCCAGACCCATCATCTCCCCCATTTTTCCTCCCGTATGCAAGCACATAAAAATTTCTCGAAAAATCATTAAAAAACTAAAAACTTTCTTCCCCCATGTGTCCATCTGTAAATCCCGATTTCCAGATGTCCACTTGATCCCAGAAAGAGCACAAAAAGCCATGGACTCGAGTTCTCTATGCCTTCCGGAATCACAGCTTCGACTGTCTGGATCAACGCTGGAATCATTTTTGTATACTGTACTCTTCCCGCCAATTTGTCTTTTTGGTGTCGTTGGAAATGCGTTGACCATTTTGGTGCTGGTTAATAATGATTTTATGTCCAGGTGAGCAGTTTTGAAAGAAAAAAAAGTAAATCATTTGAAAAGGAATATGAAGAAAACGGAGAATTTGAATACCTATACTCTACCTATCAAATGATTTTTGACCATTTTCAAGAGCCTGTATCTCAGCTTTCAAGTTTCCGATTTCTTTGAAAATTTCAGAATATACAAAGCAAGAATAGAACTTTACTTTTTTAGTTGACATCTTTTTCTAGCTACCGTAGTTTTTGAGCTATGCGCCTTTAAAGTTGGCGCGCCTCCCCCACTGGTGGGCGGCGACCAGTGGGGGAGCAGGTCCACTTTAAAGGCGCATATCTCAAAAAGTGCACTAGCTAGACAAGTTGAGCAACCTATGAAAATGTGAGAAATTTGATTTTGAACATTTTAGTAGTTGACATCTTTTTTCTAGATACCGTAGTTTTTGAGATTTTTGCCTTTAAAGTTGGCTGACCGGTGGCAGAGAAGGGTTGCGATAGTTGG</canonical>
            <polymorphic>AAATCATCCGATTGCGATAAAAATTGATATCACGATTTGAAATGCCATAAAAAACACTAAGTTGGAACAAAATTCAAAAAATTTAAAAATTAAAAAAAATTTTTTCAATTTTTAGAAATTCCAGTTTTTTTTTCTTTTAATCTGTTTGTCCAGATATCCACTTCTACATCTTCTTTTTCTTCTTCTTCTTCTTCATTCTCTCCAGACCCATCATCTCCCCCATTTTTCCTCCCGTATGCAAGCACATAAAAATTTCTCGAAAAATCATTAAAAAACTAAAAACTTTCTTCCCCCATGTGTCCATCTGTAAATCCCGATTTCCAGATGTCCACTTGATCCCAGAAAGAGCACAAAAAGCCATGGACTCGAGTTCTCTATGCCTTCCGGAATCACAGCTTCGACTGTCTGGATCAACGCTGGAATCATTTTTGTATACTGTACTCTTCCCGCCAATTTGTCTTTTTGGTGTCGTTGGAAATGCGTTGACCATTTTGGTGCTKGTTAATAATGATTTTATGTCCAGGTGAGCAGTTTTGAAAGAAAAAAAAGTAAATCATTTGAAAAGGAATATGAAGAAAACGGAGAATTTGAATACCTATACTCTACCTATCAAATGATTTTTGACCATTTTCAAGAGCCTGTATCTCAGCTTTCAAGTTTCCGATTTCTTTGAAAATTTCAGAATATACAAAGCAAGAATAGAACTTTACTTTTTTAGTTGACATCTTTTTCTAGCTACCGTAGTTTTTGAGCTATGCGCCTTTAAAGTTGGCGCGCCTCCCCCACTGGTGGGCGGCGACCAGTGGGGGAGCAGGTCCACTTTAAAGGCGCATATCTCAAAAAGTGCACTAGCTAGACAAGTTGAGCAACCTATGAAAATGTGAGAAATTTGATTTTGAACATTTTAGTAGTTGACATCTTTTTTCTAGATACCGTAGTTTTTGAGATTTTTGCCTTTAAAGTTGGCTGACCGGTGGCAGAGAAGGGTTGCGATAGTTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>XcmI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAGATGTCCACTTGAT</pcr_primer_p1>
		<pcr_primer_p2>TCCTTTTCAAATGATTTACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAGATGTCCACTTGATCCCAGAAAGAGCACAAAAAGCCATGGACTCGAGTTCTCTATGCCTTCCGGAATCACAGCTTCGACTGTCTGGATCAACGCTGGAATCATTTTTGTATACTGTACTCTTCCCGCCAATTTGTCTTTTTGGTGTCGTTGGAAATGCGTTGACCATTTTGGTGCTGGTTAATAATGATTTTATGTCCAGGTGAGCAGTTTTGAAAGAAAAAAAAGTAAATCATTTGAAAAGGA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAGATGTCCACTTGATCCCAGAAAGAGCACAAAAAGCCATGGACTCGAGTTCTCTATGCCTTCCGGAATCACAGCTTCGACTGTCTGGATCAACGCTGGAATCATTTTTGTATACTGTACTCTTCCCGCCAATTTGTCTTTTTGGTGTCGTTGGAAATGCGTTGACCATTTTGGTGCTKGTTAATAATGATTTTATGTCCAGGTGAGCAGTTTTGAAAGAAAAAAAAGTAAATCATTTGAAAAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25072</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>393872</contig_pos>
        <strand></strand>
        <context>aaaaatgtgt[A/G]aaatttkatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTCTAAAACTAAGAAAGCTAGAAAAAAGTTGTAAACTACAAAAATGTGT</left_flank>
        <right_flank>AAATTTTATTATCTTAATTTTATTTGTTAACATTATTTTCCTAGCTTTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGGAAAACCCAAAAGAGCTAGAAAAAAGTTGTAGTTACTCCTCCCTTTGCAAACGATGAGTTGCAGAGCGCTCCCGTTTTTCTGTGTGGCCACTTTAAAGGCGCATATCTCAAACAATAGGAAAGCTAGAAAAAAGTGGAAAACCACAAAAATGTAAAGCATAAAATTTTCCATATTTTCCTTTTTTCAAAATTCATCTAGCTTTAAAACTAACCGAGTTACACCCCTTTTTCGGAAAGAGAGACGCGAAGAAGCGAGAGTGCTCTCGTTTCTCTGCGTCTCCTCCATTACCTCTAGTTAGAGGGTTATATCTCAGGAACTGTTAGAGCTAGAAGAAATATTCTAAGAAAATTTGAACTCTGTTCTCTGTATGCTTCAAAATGAATATGAACGCCCTAAGTATAAGAAATTTCATTTAAAAGAGACTACCTTCCTTTAAAGGCGCATACCTCTAAAACTAAGAAAGCTAGAAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATTATCTTAATTTTATTTGTTAACATTATTTTCCTAGCTTTTACAATTTTTAAGATATGACGCCTAGAAGAAGAAATACCATTTTTTCACAAATTCAGCTAACCCCTTTGGAAAATCTTTGGAAAATCCAGGAAATGTCTGATCCCAATTCTTGAGCCTTATTTTTGGAGTTTGATCTTTGTTCATTTTGTATGAGCGTCATTCGGAAAACTCCAAAATTCATTTTTTGAATGAATCACTAAAATTTTTCTGTTATTTTTGATCCATTTCTATCCGTTTTGGCTCCGCCCACTTTTTCCAGTTATCCAGATCATTTTATTTTTTGCTTTGTCATTTTGTACCTCATCTTATATATAGTACTTATGTTTTTGGAATTTTTGAAATATTTTTTTTCAAAATTCTAAAATTTAGATTTTTCCAGAAAATGAACAAAAATGATTACATTATCCTGGCACAAACTCTAAACACTATTTGCTATGTGATCACAATTGCA</canonical>
            <polymorphic>CCGGAAAACCCAAAAGAGCTAGAAAAAAGTTGTAGTTACTCCTCCCTTTGCAAACGATGAGTTGCAGAGCGCTCCCGTTTTTCTGTGTGGCCACTTTAAAGGCGCATATCTCAAACAATAGGAAAGCTAGAAAAAAGTGGAAAACCACAAAAATGTAAAGCATAAAATTTTCCATATTTTCCTTTTTTCAAAATTCATCTAGCTTTAAAACTAACCGAGTTACACCCCTTTTTCGGAAAGAGAGACGCGAAGAAGCGAGAGTGCTCTCGTTTCTCTGCGTCTCCTCCATTACCTCTAGTTAGAGGGTTATATCTCAGGAACTGTTAGAGCTAGAAGAAATATTCTAAGAAAATTTGAACTCTGTTCTCTGTATGCTTCAAAATGAATATGAACGCCCTAAGTATAAGAAATTTCATTTAAAAGAGACTACCTTCCTTTAAAGGCGCATACCTCTAAAACTAAGAAAGCTAGAAAAAAGTTGTAAACTACAAAAATGTGTRAAATTTTATTATCTTAATTTTATTTGTTAACATTATTTTCCTAGCTTTTACAATTTTTAAGATATGACGCCTAGAAGAAGAAATACCATTTTTTCACAAATTCAGCTAACCCCTTTGGAAAATCTTTGGAAAATCCAGGAAATGTCTGATCCCAATTCTTGAGCCTTATTTTTGGAGTTTGATCTTTGTTCATTTTGTATGAGCGTCATTCGGAAAACTCCAAAATTCATTTTTTGAATGAATCACTAAAATTTTTCTGTTATTTTTGATCCATTTCTATCCGTTTTGGCTCCGCCCACTTTTTCCAGTTATCCAGATCATTTTATTTTTTGCTTTGTCATTTTGTACCTCATCTTATATATAGTACTTATGTTTTTGGAATTTTTGAAATATTTTTTTTCAAAATTCTAAAATTTAGATTTTTCCAGAAAATGAACAAAAATGATTACATTATCCTGGCACAAACTCTAAACACTATTTGCTATGTGATCACAATTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGAACGCCCTAAGTATAAGAA</pcr_primer_p1>
		<pcr_primer_p2>CTGGATTTTCCAAAGATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATGAACGCCCTAAGTATAAGAAATTTCATTTAAAAGAGACTACCTTCCTTTAAAGGCGCATACCTCTAAAACTAAGAAAGCTAGAAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATTATCTTAATTTTATTTGTTAACATTATTTTCCTAGCTTTTACAATTTTTAAGATATGACGCCTAGAAGAAGAAATACCATTTTTTCACAAATTCAGCTAACCCCTTTGGAAAATCTTTGGAAAATCCAG</canonical_amplicon>
		<polymorphic_amplicon>TATGAACGCCCTAAGTATAAGAAATTTCATTTAAAAGAGACTACCTTCCTTTAAAGGCGCATACCTCTAAAACTAAGAAAGCTAGAAAAAAGTTGTAAACTACAAAAATGTGTRAAATTTTATTATCTTAATTTTATTTGTTAACATTATTTTCCTAGCTTTTACAATTTTTAAGATATGACGCCTAGAAGAAGAAATACCATTTTTTCACAAATTCAGCTAACCCCTTTGGAAAATCTTTGGAAAATCCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25073</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>393879</contig_pos>
        <strand></strand>
        <context>tgtraaattt[T/G]attatcttaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AACTAAGAAAGCTAGAAAAAAGTTGTAAACTACAAAAATGTGTAAAATTT</left_flank>
        <right_flank>ATTATCTTAATTTTATTTGTTAACATTATTTTCCTAGCTTTTACAATTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCCAAAAGAGCTAGAAAAAAGTTGTAGTTACTCCTCCCTTTGCAAACGATGAGTTGCAGAGCGCTCCCGTTTTTCTGTGTGGCCACTTTAAAGGCGCATATCTCAAACAATAGGAAAGCTAGAAAAAAGTGGAAAACCACAAAAATGTAAAGCATAAAATTTTCCATATTTTCCTTTTTTCAAAATTCATCTAGCTTTAAAACTAACCGAGTTACACCCCTTTTTCGGAAAGAGAGACGCGAAGAAGCGAGAGTGCTCTCGTTTCTCTGCGTCTCCTCCATTACCTCTAGTTAGAGGGTTATATCTCAGGAACTGTTAGAGCTAGAAGAAATATTCTAAGAAAATTTGAACTCTGTTCTCTGTATGCTTCAAAATGAATATGAACGCCCTAAGTATAAGAAATTTCATTTAAAAGAGACTACCTTCCTTTAAAGGCGCATACCTCTAAAACTAAGAAAGCTAGAAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATTATCTTAATTTTATTTGTTAACATTATTTTCCTAGCTTTTACAATTTTTAAGATATGACGCCTAGAAGAAGAAATACCATTTTTTCACAAATTCAGCTAACCCCTTTGGAAAATCTTTGGAAAATCCAGGAAATGTCTGATCCCAATTCTTGAGCCTTATTTTTGGAGTTTGATCTTTGTTCATTTTGTATGAGCGTCATTCGGAAAACTCCAAAATTCATTTTTTGAATGAATCACTAAAATTTTTCTGTTATTTTTGATCCATTTCTATCCGTTTTGGCTCCGCCCACTTTTTCCAGTTATCCAGATCATTTTATTTTTTGCTTTGTCATTTTGTACCTCATCTTATATATAGTACTTATGTTTTTGGAATTTTTGAAATATTTTTTTTCAAAATTCTAAAATTTAGATTTTTCCAGAAAATGAACAAAAATGATTACATTATCCTGGCACAAACTCTAAACACTATTTGCTATGTGATCACAATTGCAGTGGGAA</canonical>
            <polymorphic>ACCCAAAAGAGCTAGAAAAAAGTTGTAGTTACTCCTCCCTTTGCAAACGATGAGTTGCAGAGCGCTCCCGTTTTTCTGTGTGGCCACTTTAAAGGCGCATATCTCAAACAATAGGAAAGCTAGAAAAAAGTGGAAAACCACAAAAATGTAAAGCATAAAATTTTCCATATTTTCCTTTTTTCAAAATTCATCTAGCTTTAAAACTAACCGAGTTACACCCCTTTTTCGGAAAGAGAGACGCGAAGAAGCGAGAGTGCTCTCGTTTCTCTGCGTCTCCTCCATTACCTCTAGTTAGAGGGTTATATCTCAGGAACTGTTAGAGCTAGAAGAAATATTCTAAGAAAATTTGAACTCTGTTCTCTGTATGCTTCAAAATGAATATGAACGCCCTAAGTATAAGAAATTTCATTTAAAAGAGACTACCTTCCTTTAAAGGCGCATACCTCTAAAACTAAGAAAGCTAGAAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTKATTATCTTAATTTTATTTGTTAACATTATTTTCCTAGCTTTTACAATTTTTAAGATATGACGCCTAGAAGAAGAAATACCATTTTTTCACAAATTCAGCTAACCCCTTTGGAAAATCTTTGGAAAATCCAGGAAATGTCTGATCCCAATTCTTGAGCCTTATTTTTGGAGTTTGATCTTTGTTCATTTTGTATGAGCGTCATTCGGAAAACTCCAAAATTCATTTTTTGAATGAATCACTAAAATTTTTCTGTTATTTTTGATCCATTTCTATCCGTTTTGGCTCCGCCCACTTTTTCCAGTTATCCAGATCATTTTATTTTTTGCTTTGTCATTTTGTACCTCATCTTATATATAGTACTTATGTTTTTGGAATTTTTGAAATATTTTTTTTCAAAATTCTAAAATTTAGATTTTTCCAGAAAATGAACAAAAATGATTACATTATCCTGGCACAAACTCTAAACACTATTTGCTATGTGATCACAATTGCAGTGGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGAACGCCCTAAGTATAAGAA</pcr_primer_p1>
		<pcr_primer_p2>CTGGATTTTCCAAAGATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATGAACGCCCTAAGTATAAGAAATTTCATTTAAAAGAGACTACCTTCCTTTAAAGGCGCATACCTCTAAAACTAAGAAAGCTAGAAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATTATCTTAATTTTATTTGTTAACATTATTTTCCTAGCTTTTACAATTTTTAAGATATGACGCCTAGAAGAAGAAATACCATTTTTTCACAAATTCAGCTAACCCCTTTGGAAAATCTTTGGAAAATCCAG</canonical_amplicon>
		<polymorphic_amplicon>TATGAACGCCCTAAGTATAAGAAATTTCATTTAAAAGAGACTACCTTCCTTTAAAGGCGCATACCTCTAAAACTAAGAAAGCTAGAAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTKATTATCTTAATTTTATTTGTTAACATTATTTTCCTAGCTTTTACAATTTTTAAGATATGACGCCTAGAAGAAGAAATACCATTTTTTCACAAATTCAGCTAACCCCTTTGGAAAATCTTTGGAAAATCCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25074</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>393912</contig_pos>
        <strand></strand>
        <context>acattatttt[C/T]ctagctttta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATGTGTAAAATTTTATTATCTTAATTTTATTTGTTAACATTATTTT</left_flank>
        <right_flank>CTAGCTTTTACAATTTTTAAGATATGACGCCTAGAAGAAGAAATACCATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCCCTTTGCAAACGATGAGTTGCAGAGCGCTCCCGTTTTTCTGTGTGGCCACTTTAAAGGCGCATATCTCAAACAATAGGAAAGCTAGAAAAAAGTGGAAAACCACAAAAATGTAAAGCATAAAATTTTCCATATTTTCCTTTTTTCAAAATTCATCTAGCTTTAAAACTAACCGAGTTACACCCCTTTTTCGGAAAGAGAGACGCGAAGAAGCGAGAGTGCTCTCGTTTCTCTGCGTCTCCTCCATTACCTCTAGTTAGAGGGTTATATCTCAGGAACTGTTAGAGCTAGAAGAAATATTCTAAGAAAATTTGAACTCTGTTCTCTGTATGCTTCAAAATGAATATGAACGCCCTAAGTATAAGAAATTTCATTTAAAAGAGACTACCTTCCTTTAAAGGCGCATACCTCTAAAACTAAGAAAGCTAGAAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATTATCTTAATTTTATTTGTTAACATTATTTTCCTAGCTTTTACAATTTTTAAGATATGACGCCTAGAAGAAGAAATACCATTTTTTCACAAATTCAGCTAACCCCTTTGGAAAATCTTTGGAAAATCCAGGAAATGTCTGATCCCAATTCTTGAGCCTTATTTTTGGAGTTTGATCTTTGTTCATTTTGTATGAGCGTCATTCGGAAAACTCCAAAATTCATTTTTTGAATGAATCACTAAAATTTTTCTGTTATTTTTGATCCATTTCTATCCGTTTTGGCTCCGCCCACTTTTTCCAGTTATCCAGATCATTTTATTTTTTGCTTTGTCATTTTGTACCTCATCTTATATATAGTACTTATGTTTTTGGAATTTTTGAAATATTTTTTTTCAAAATTCTAAAATTTAGATTTTTCCAGAAAATGAACAAAAATGATTACATTATCCTGGCACAAACTCTAAACACTATTTGCTATGTGATCACAATTGCAGTGGGAATCGGAGGCAACTTTTGGGTTTCTTGGAAGGTGA</canonical>
            <polymorphic>CCTCCCTTTGCAAACGATGAGTTGCAGAGCGCTCCCGTTTTTCTGTGTGGCCACTTTAAAGGCGCATATCTCAAACAATAGGAAAGCTAGAAAAAAGTGGAAAACCACAAAAATGTAAAGCATAAAATTTTCCATATTTTCCTTTTTTCAAAATTCATCTAGCTTTAAAACTAACCGAGTTACACCCCTTTTTCGGAAAGAGAGACGCGAAGAAGCGAGAGTGCTCTCGTTTCTCTGCGTCTCCTCCATTACCTCTAGTTAGAGGGTTATATCTCAGGAACTGTTAGAGCTAGAAGAAATATTCTAAGAAAATTTGAACTCTGTTCTCTGTATGCTTCAAAATGAATATGAACGCCCTAAGTATAAGAAATTTCATTTAAAAGAGACTACCTTCCTTTAAAGGCGCATACCTCTAAAACTAAGAAAGCTAGAAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATTATCTTAATTTTATTTGTTAACATTATTTTYCTAGCTTTTACAATTTTTAAGATATGACGCCTAGAAGAAGAAATACCATTTTTTCACAAATTCAGCTAACCCCTTTGGAAAATCTTTGGAAAATCCAGGAAATGTCTGATCCCAATTCTTGAGCCTTATTTTTGGAGTTTGATCTTTGTTCATTTTGTATGAGCGTCATTCGGAAAACTCCAAAATTCATTTTTTGAATGAATCACTAAAATTTTTCTGTTATTTTTGATCCATTTCTATCCGTTTTGGCTCCGCCCACTTTTTCCAGTTATCCAGATCATTTTATTTTTTGCTTTGTCATTTTGTACCTCATCTTATATATAGTACTTATGTTTTTGGAATTTTTGAAATATTTTTTTTCAAAATTCTAAAATTTAGATTTTTCCAGAAAATGAACAAAAATGATTACATTATCCTGGCACAAACTCTAAACACTATTTGCTATGTGATCACAATTGCAGTGGGAATCGGAGGCAACTTTTGGGTTTCTTGGAAGGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGAACGCCCTAAGTATAAGAA</pcr_primer_p1>
		<pcr_primer_p2>CTGGATTTTCCAAAGATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATGAACGCCCTAAGTATAAGAAATTTCATTTAAAAGAGACTACCTTCCTTTAAAGGCGCATACCTCTAAAACTAAGAAAGCTAGAAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATTATCTTAATTTTATTTGTTAACATTATTTTCCTAGCTTTTACAATTTTTAAGATATGACGCCTAGAAGAAGAAATACCATTTTTTCACAAATTCAGCTAACCCCTTTGGAAAATCTTTGGAAAATCCAG</canonical_amplicon>
		<polymorphic_amplicon>TATGAACGCCCTAAGTATAAGAAATTTCATTTAAAAGAGACTACCTTCCTTTAAAGGCGCATACCTCTAAAACTAAGAAAGCTAGAAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATTATCTTAATTTTATTTGTTAACATTATTTTYCTAGCTTTTACAATTTTTAAGATATGACGCCTAGAAGAAGAAATACCATTTTTTCACAAATTCAGCTAACCCCTTTGGAAAATCTTTGGAAAATCCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25075</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>397788</contig_pos>
        <strand></strand>
        <context>tcatctagct[C/T]ttaaattagc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTAGAACATAAAATTTTACACAACTTCCTCTTTCCAAAATTCATCTAGCT</left_flank>
        <right_flank>TTAAATTAGCCGAGTTACCCCTTTTTGCAAGTCAGAGAGGCGAGAGCGCT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAGTATAAAAATTCAGAAAATTCCAAAAAAAAATTTTTTTTCAAAAAAAATTTTTTTTTTCAAAAACTTTCAAAACTCCAGGCAGTTCCAACCGTATCAACTGCACATCAATTCTGCGCATTCGTCGTACTGTAACTGCATTTGTCATTGTGTACCTAGTCTGTTGGACTCCTTACTGGTGCCTTTTTTGGCTCCTTTCCTTTTTCCCAATCGCCAATAACTGGATGGTTGTGGTCTCTACGTTTACCCACCTGCTACCGTATATTTCGTGCACCGCGTATCCGGTGATTCTAACAGCAATCAATAAGGGAATTCGAAGTGCACATTCGACAATTATGACTAGTCAGAGAAAGAAGTTGATGACGATTCGAGCTGGGGCTTATCAGGTAACTTTGAAACGAAATATCTCAAAAACCAAGCTAGGAGAATATTTATAACTACCAAAATGTAGAACATAAAATTTTACACAACTTCCTCTTTCCAAAATTCATCTAGCTCTTAAATTAGCCGAGTTACCCCTTTTTGCAAGTCAGAGAGGCGAGAGCGCTCTCGTTTCTCTGCGTCTCCCCCCTCCCTCTCCCTAGTGATGGAGGGCGTGCTTTCCTGGCTTAATTTTAAAACGTTATATCTCAAAAACTAAAACAGCTACTAAATTATTTACAACTACAAAGATGTGTAAAATTTAATGCTTTACAATTTTGTAGTTAAAACAATTTTGCTAGCTATTCTAGTTTTGGAGATACAGCTTGTCAAAAAAGGTAAACTCTTTTTCTCACTATTTTGAGTTTATTTCAAGGACGGTAGGAGCTACAAAAATGGTCCCAACTAGAAAAACGCGCCAAATTACAATCTTAAGCCAAAAAACTTTCAGATGATAACCGCACAACTTGGATTTGTGCAAACGTGGCTGCGAGACGATCAGAATGGCGGCACACTAGCTCCAAGTCTGATTAGTCCCAGATGGAGCTCTTCTGGAAGTGTTGGAATTTCGAAAATCC</canonical>
            <polymorphic>GAGAGTATAAAAATTCAGAAAATTCCAAAAAAAAATTTTTTTTCAAAAAAAATTTTTTTTTTCAAAAACTTTCAAAACTCCAGGCAGTTCCAACCGTATCAACTGCACATCAATTCTGCGCATTCGTCGTACTGTAACTGCATTTGTCATTGTGTACCTAGTCTGTTGGACTCCTTACTGGTGCCTTTTTTGGCTCCTTTCCTTTTTCCCAATCGCCAATAACTGGATGGTTGTGGTCTCTACGTTTACCCACCTGCTACCGTATATTTCGTGCACCGCGTATCCGGTGATTCTAACAGCAATCAATAAGGGAATTCGAAGTGCACATTCGACAATTATGACTAGTCAGAGAAAGAAGTTGATGACGATTCGAGCTGGGGCTTATCAGGTAACTTTGAAACGAAATATCTCAAAAACCAAGCTAGGAGAATATTTATAACTACCAAAATGTAGAACATAAAATTTTACACAACTTCCTCTTTCCAAAATTCATCTAGCTYTTAAATTAGCCGAGTTACCCCTTTTTGCAAGTCAGAGAGGCGAGAGCGCTCTCGTTTCTCTGCGTCTCCCCCCTCCCTCTCCCTAGTGATGGAGGGCGTGCTTTCCTGGCTTAATTTTAAAACGTTATATCTCAAAAACTAAAACAGCTACTAAATTATTTACAACTACAAAGATGTGTAAAATTTAATGCTTTACAATTTTGTAGTTAAAACAATTTTGCTAGCTATTCTAGTTTTGGAGATACAGCTTGTCAAAAAAGGTAAACTCTTTTTCTCACTATTTTGAGTTTATTTCAAGGACGGTAGGAGCTACAAAAATGGTCCCAACTAGAAAAACGCGCCAAATTACAATCTTAAGCCAAAAAACTTTCAGATGATAACCGCACAACTTGGATTTGTGCAAACGTGGCTGCGAGACGATCAGAATGGCGGCACACTAGCTCCAAGTCTGATTAGTCCCAGATGGAGCTCTTCTGGAAGTGTTGGAATTTCGAAAATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCTTATCAGGTAACTTTGAAAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATAGTGAGAAAAAGAGTTTACCT</pcr_primer_p2>
		<pcr_amplicon_size>406</pcr_amplicon_size>
		<canonical_amplicon>GGCTTATCAGGTAACTTTGAAACGAAATATCTCAAAAACCAAGCTAGGAGAATATTTATAACTACCAAAATGTAGAACATAAAATTTTACACAACTTCCTCTTTCCAAAATTCATCTAGCTCTTAAATTAGCCGAGTTACCCCTTTTTGCAAGTCAGAGAGGCGAGAGCGCTCTCGTTTCTCTGCGTCTCCCCCCTCCCTCTCCCTAGTGATGGAGGGCGTGCTTTCCTGGCTTAATTTTAAAACGTTATATCTCAAAAACTAAAACAGCTACTAAATTATTTACAACTACAAAGATGTGTAAAATTTAATGCTTTACAATTTTGTAGTTAAAACAATTTTGCTAGCTATTCTAGTTTTGGAGATACAGCTTGTCAAAAAAGGTAAACTCTTTTTCTCACTATTTT</canonical_amplicon>
		<polymorphic_amplicon>GGCTTATCAGGTAACTTTGAAACGAAATATCTCAAAAACCAAGCTAGGAGAATATTTATAACTACCAAAATGTAGAACATAAAATTTTACACAACTTCCTCTTTCCAAAATTCATCTAGCTYTTAAATTAGCCGAGTTACCCCTTTTTGCAAGTCAGAGAGGCGAGAGCGCTCTCGTTTCTCTGCGTCTCCCCCCTCCCTCTCCCTAGTGATGGAGGGCGTGCTTTCCTGGCTTAATTTTAAAACGTTATATCTCAAAAACTAAAACAGCTACTAAATTATTTACAACTACAAAGATGTGTAAAATTTAATGCTTTACAATTTTGTAGTTAAAACAATTTTGCTAGCTATTCTAGTTTTGGAGATACAGCTTGTCAAAAAAGGTAAACTCTTTTTCTCACTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25076</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>397912</contig_pos>
        <strand></strand>
        <context>attttaaaac[G/T]ttatatctca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCCCTCTCCCTAGTGATGGAGGGCGTGCTTTCCTGGCTTAATTTTAAAAC</left_flank>
        <right_flank>TTATATCTCAAAAACTAAAACAGCTACTAAATTATTTACAACTACAAAGA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTCGTACTGTAACTGCATTTGTCATTGTGTACCTAGTCTGTTGGACTCCTTACTGGTGCCTTTTTTGGCTCCTTTCCTTTTTCCCAATCGCCAATAACTGGATGGTTGTGGTCTCTACGTTTACCCACCTGCTACCGTATATTTCGTGCACCGCGTATCCGGTGATTCTAACAGCAATCAATAAGGGAATTCGAAGTGCACATTCGACAATTATGACTAGTCAGAGAAAGAAGTTGATGACGATTCGAGCTGGGGCTTATCAGGTAACTTTGAAACGAAATATCTCAAAAACCAAGCTAGGAGAATATTTATAACTACCAAAATGTAGAACATAAAATTTTACACAACTTCCTCTTTCCAAAATTCATCTAGCTCTTAAATTAGCCGAGTTACCCCTTTTTGCAAGTCAGAGAGGCGAGAGCGCTCTCGTTTCTCTGCGTCTCCCCCCTCCCTCTCCCTAGTGATGGAGGGCGTGCTTTCCTGGCTTAATTTTAAAACGTTATATCTCAAAAACTAAAACAGCTACTAAATTATTTACAACTACAAAGATGTGTAAAATTTAATGCTTTACAATTTTGTAGTTAAAACAATTTTGCTAGCTATTCTAGTTTTGGAGATACAGCTTGTCAAAAAAGGTAAACTCTTTTTCTCACTATTTTGAGTTTATTTCAAGGACGGTAGGAGCTACAAAAATGGTCCCAACTAGAAAAACGCGCCAAATTACAATCTTAAGCCAAAAAACTTTCAGATGATAACCGCACAACTTGGATTTGTGCAAACGTGGCTGCGAGACGATCAGAATGGCGGCACACTAGCTCCAAGTCTGATTAGTCCCAGATGGAGCTCTTCTGGAAGTGTTGGAATTTCGAAAATCCACGTGTCAAGTGTAGATGTCGAAGAGGATGAGGAGCCACCGACGACTCAGATCTTTTTGTAGTAGATCAAAACTTTTTTGTCTTTTTCGTCATATTTTTTAAGGCATCTCATGTTTTCGGGTCG</canonical>
            <polymorphic>CGTCGTACTGTAACTGCATTTGTCATTGTGTACCTAGTCTGTTGGACTCCTTACTGGTGCCTTTTTTGGCTCCTTTCCTTTTTCCCAATCGCCAATAACTGGATGGTTGTGGTCTCTACGTTTACCCACCTGCTACCGTATATTTCGTGCACCGCGTATCCGGTGATTCTAACAGCAATCAATAAGGGAATTCGAAGTGCACATTCGACAATTATGACTAGTCAGAGAAAGAAGTTGATGACGATTCGAGCTGGGGCTTATCAGGTAACTTTGAAACGAAATATCTCAAAAACCAAGCTAGGAGAATATTTATAACTACCAAAATGTAGAACATAAAATTTTACACAACTTCCTCTTTCCAAAATTCATCTAGCTCTTAAATTAGCCGAGTTACCCCTTTTTGCAAGTCAGAGAGGCGAGAGCGCTCTCGTTTCTCTGCGTCTCCCCCCTCCCTCTCCCTAGTGATGGAGGGCGTGCTTTCCTGGCTTAATTTTAAAACKTTATATCTCAAAAACTAAAACAGCTACTAAATTATTTACAACTACAAAGATGTGTAAAATTTAATGCTTTACAATTTTGTAGTTAAAACAATTTTGCTAGCTATTCTAGTTTTGGAGATACAGCTTGTCAAAAAAGGTAAACTCTTTTTCTCACTATTTTGAGTTTATTTCAAGGACGGTAGGAGCTACAAAAATGGTCCCAACTAGAAAAACGCGCCAAATTACAATCTTAAGCCAAAAAACTTTCAGATGATAACCGCACAACTTGGATTTGTGCAAACGTGGCTGCGAGACGATCAGAATGGCGGCACACTAGCTCCAAGTCTGATTAGTCCCAGATGGAGCTCTTCTGGAAGTGTTGGAATTTCGAAAATCCACGTGTCAAGTGTAGATGTCGAAGAGGATGAGGAGCCACCGACGACTCAGATCTTTTTGTAGTAGATCAAAACTTTTTTGTCTTTTTCGTCATATTTTTTAAGGCATCTCATGTTTTCGGGTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>380 282 123 118 97</canonical_bands>
                <polymorphic_bands>662 123 118 97</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCTTATCAGGTAACTTTGAAAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATAGTGAGAAAAAGAGTTTACCT</pcr_primer_p2>
		<pcr_amplicon_size>406</pcr_amplicon_size>
		<canonical_amplicon>GGCTTATCAGGTAACTTTGAAACGAAATATCTCAAAAACCAAGCTAGGAGAATATTTATAACTACCAAAATGTAGAACATAAAATTTTACACAACTTCCTCTTTCCAAAATTCATCTAGCTCTTAAATTAGCCGAGTTACCCCTTTTTGCAAGTCAGAGAGGCGAGAGCGCTCTCGTTTCTCTGCGTCTCCCCCCTCCCTCTCCCTAGTGATGGAGGGCGTGCTTTCCTGGCTTAATTTTAAAACGTTATATCTCAAAAACTAAAACAGCTACTAAATTATTTACAACTACAAAGATGTGTAAAATTTAATGCTTTACAATTTTGTAGTTAAAACAATTTTGCTAGCTATTCTAGTTTTGGAGATACAGCTTGTCAAAAAAGGTAAACTCTTTTTCTCACTATTTT</canonical_amplicon>
		<polymorphic_amplicon>GGCTTATCAGGTAACTTTGAAACGAAATATCTCAAAAACCAAGCTAGGAGAATATTTATAACTACCAAAATGTAGAACATAAAATTTTACACAACTTCCTCTTTCCAAAATTCATCTAGCTCTTAAATTAGCCGAGTTACCCCTTTTTGCAAGTCAGAGAGGCGAGAGCGCTCTCGTTTCTCTGCGTCTCCCCCCTCCCTCTCCCTAGTGATGGAGGGCGTGCTTTCCTGGCTTAATTTTAAAACKTTATATCTCAAAAACTAAAACAGCTACTAAATTATTTACAACTACAAAGATGTGTAAAATTTAATGCTTTACAATTTTGTAGTTAAAACAATTTTGCTAGCTATTCTAGTTTTGGAGATACAGCTTGTCAAAAAAGGTAAACTCTTTTTCTCACTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25077</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>397997</contig_pos>
        <strand></strand>
        <context>ttttgtagtt[A/G]aaacaatttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTACAACTACAAAGATGTGTAAAATTTAATGCTTTACAATTTTGTAGTT</left_flank>
        <right_flank>AAACAATTTTGCTAGCTATTCTAGTTTTGGAGATACAGCTTGTCAAAAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATCGCCAATAACTGGATGGTTGTGGTCTCTACGTTTACCCACCTGCTACCGTATATTTCGTGCACCGCGTATCCGGTGATTCTAACAGCAATCAATAAGGGAATTCGAAGTGCACATTCGACAATTATGACTAGTCAGAGAAAGAAGTTGATGACGATTCGAGCTGGGGCTTATCAGGTAACTTTGAAACGAAATATCTCAAAAACCAAGCTAGGAGAATATTTATAACTACCAAAATGTAGAACATAAAATTTTACACAACTTCCTCTTTCCAAAATTCATCTAGCTCTTAAATTAGCCGAGTTACCCCTTTTTGCAAGTCAGAGAGGCGAGAGCGCTCTCGTTTCTCTGCGTCTCCCCCCTCCCTCTCCCTAGTGATGGAGGGCGTGCTTTCCTGGCTTAATTTTAAAACGTTATATCTCAAAAACTAAAACAGCTACTAAATTATTTACAACTACAAAGATGTGTAAAATTTAATGCTTTACAATTTTGTAGTTAAAACAATTTTGCTAGCTATTCTAGTTTTGGAGATACAGCTTGTCAAAAAAGGTAAACTCTTTTTCTCACTATTTTGAGTTTATTTCAAGGACGGTAGGAGCTACAAAAATGGTCCCAACTAGAAAAACGCGCCAAATTACAATCTTAAGCCAAAAAACTTTCAGATGATAACCGCACAACTTGGATTTGTGCAAACGTGGCTGCGAGACGATCAGAATGGCGGCACACTAGCTCCAAGTCTGATTAGTCCCAGATGGAGCTCTTCTGGAAGTGTTGGAATTTCGAAAATCCACGTGTCAAGTGTAGATGTCGAAGAGGATGAGGAGCCACCGACGACTCAGATCTTTTTGTAGTAGATCAAAACTTTTTTGTCTTTTTCGTCATATTTTTTAAGGCATCTCATGTTTTCGGGTCGTTTTTAAAGCTGAAATAAACGTTTTTTTTCAAATCTTCGTGAAAATCGATATTTCTGAAACTATAAAACATCAAGTTAGCTCAAA</canonical>
            <polymorphic>CAATCGCCAATAACTGGATGGTTGTGGTCTCTACGTTTACCCACCTGCTACCGTATATTTCGTGCACCGCGTATCCGGTGATTCTAACAGCAATCAATAAGGGAATTCGAAGTGCACATTCGACAATTATGACTAGTCAGAGAAAGAAGTTGATGACGATTCGAGCTGGGGCTTATCAGGTAACTTTGAAACGAAATATCTCAAAAACCAAGCTAGGAGAATATTTATAACTACCAAAATGTAGAACATAAAATTTTACACAACTTCCTCTTTCCAAAATTCATCTAGCTCTTAAATTAGCCGAGTTACCCCTTTTTGCAAGTCAGAGAGGCGAGAGCGCTCTCGTTTCTCTGCGTCTCCCCCCTCCCTCTCCCTAGTGATGGAGGGCGTGCTTTCCTGGCTTAATTTTAAAACGTTATATCTCAAAAACTAAAACAGCTACTAAATTATTTACAACTACAAAGATGTGTAAAATTTAATGCTTTACAATTTTGTAGTTRAAACAATTTTGCTAGCTATTCTAGTTTTGGAGATACAGCTTGTCAAAAAAGGTAAACTCTTTTTCTCACTATTTTGAGTTTATTTCAAGGACGGTAGGAGCTACAAAAATGGTCCCAACTAGAAAAACGCGCCAAATTACAATCTTAAGCCAAAAAACTTTCAGATGATAACCGCACAACTTGGATTTGTGCAAACGTGGCTGCGAGACGATCAGAATGGCGGCACACTAGCTCCAAGTCTGATTAGTCCCAGATGGAGCTCTTCTGGAAGTGTTGGAATTTCGAAAATCCACGTGTCAAGTGTAGATGTCGAAGAGGATGAGGAGCCACCGACGACTCAGATCTTTTTGTAGTAGATCAAAACTTTTTTGTCTTTTTCGTCATATTTTTTAAGGCATCTCATGTTTTCGGGTCGTTTTTAAAGCTGAAATAAACGTTTTTTTTCAAATCTTCGTGAAAATCGATATTTCTGAAACTATAAAACATCAAGTTAGCTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>292 245 147 110 81 68 29 22 6</canonical_bands>
                <polymorphic_bands>292 245 169 110 81 68 29 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCTTATCAGGTAACTTTGAAAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATAGTGAGAAAAAGAGTTTACCT</pcr_primer_p2>
		<pcr_amplicon_size>406</pcr_amplicon_size>
		<canonical_amplicon>GGCTTATCAGGTAACTTTGAAACGAAATATCTCAAAAACCAAGCTAGGAGAATATTTATAACTACCAAAATGTAGAACATAAAATTTTACACAACTTCCTCTTTCCAAAATTCATCTAGCTCTTAAATTAGCCGAGTTACCCCTTTTTGCAAGTCAGAGAGGCGAGAGCGCTCTCGTTTCTCTGCGTCTCCCCCCTCCCTCTCCCTAGTGATGGAGGGCGTGCTTTCCTGGCTTAATTTTAAAACGTTATATCTCAAAAACTAAAACAGCTACTAAATTATTTACAACTACAAAGATGTGTAAAATTTAATGCTTTACAATTTTGTAGTTAAAACAATTTTGCTAGCTATTCTAGTTTTGGAGATACAGCTTGTCAAAAAAGGTAAACTCTTTTTCTCACTATTTT</canonical_amplicon>
		<polymorphic_amplicon>GGCTTATCAGGTAACTTTGAAACGAAATATCTCAAAAACCAAGCTAGGAGAATATTTATAACTACCAAAATGTAGAACATAAAATTTTACACAACTTCCTCTTTCCAAAATTCATCTAGCTCTTAAATTAGCCGAGTTACCCCTTTTTGCAAGTCAGAGAGGCGAGAGCGCTCTCGTTTCTCTGCGTCTCCCCCCTCCCTCTCCCTAGTGATGGAGGGCGTGCTTTCCTGGCTTAATTTTAAAACGTTATATCTCAAAAACTAAAACAGCTACTAAATTATTTACAACTACAAAGATGTGTAAAATTTAATGCTTTACAATTTTGTAGTTRAAACAATTTTGCTAGCTATTCTAGTTTTGGAGATACAGCTTGTCAAAAAAGGTAAACTCTTTTTCTCACTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25078</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>398019</contig_pos>
        <strand></strand>
        <context>ctagctattc[T/C]agttttggag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAATTTAATGCTTTACAATTTTGTAGTTAAAACAATTTTGCTAGCTATTC</left_flank>
        <right_flank>AGTTTTGGAGATACAGCTTGTCAAAAAAGGTAAACTCTTTTTCTCACTAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGGTCTCTACGTTTACCCACCTGCTACCGTATATTTCGTGCACCGCGTATCCGGTGATTCTAACAGCAATCAATAAGGGAATTCGAAGTGCACATTCGACAATTATGACTAGTCAGAGAAAGAAGTTGATGACGATTCGAGCTGGGGCTTATCAGGTAACTTTGAAACGAAATATCTCAAAAACCAAGCTAGGAGAATATTTATAACTACCAAAATGTAGAACATAAAATTTTACACAACTTCCTCTTTCCAAAATTCATCTAGCTCTTAAATTAGCCGAGTTACCCCTTTTTGCAAGTCAGAGAGGCGAGAGCGCTCTCGTTTCTCTGCGTCTCCCCCCTCCCTCTCCCTAGTGATGGAGGGCGTGCTTTCCTGGCTTAATTTTAAAACGTTATATCTCAAAAACTAAAACAGCTACTAAATTATTTACAACTACAAAGATGTGTAAAATTTAATGCTTTACAATTTTGTAGTTAAAACAATTTTGCTAGCTATTCTAGTTTTGGAGATACAGCTTGTCAAAAAAGGTAAACTCTTTTTCTCACTATTTTGAGTTTATTTCAAGGACGGTAGGAGCTACAAAAATGGTCCCAACTAGAAAAACGCGCCAAATTACAATCTTAAGCCAAAAAACTTTCAGATGATAACCGCACAACTTGGATTTGTGCAAACGTGGCTGCGAGACGATCAGAATGGCGGCACACTAGCTCCAAGTCTGATTAGTCCCAGATGGAGCTCTTCTGGAAGTGTTGGAATTTCGAAAATCCACGTGTCAAGTGTAGATGTCGAAGAGGATGAGGAGCCACCGACGACTCAGATCTTTTTGTAGTAGATCAAAACTTTTTTGTCTTTTTCGTCATATTTTTTAAGGCATCTCATGTTTTCGGGTCGTTTTTAAAGCTGAAATAAACGTTTTTTTTCAAATCTTCGTGAAAATCGATATTTCTGAAACTATAAAACATCAAGTTAGCTCAAAAATGTGCTCTGGAACCCCTAAA</canonical>
            <polymorphic>TGTGGTCTCTACGTTTACCCACCTGCTACCGTATATTTCGTGCACCGCGTATCCGGTGATTCTAACAGCAATCAATAAGGGAATTCGAAGTGCACATTCGACAATTATGACTAGTCAGAGAAAGAAGTTGATGACGATTCGAGCTGGGGCTTATCAGGTAACTTTGAAACGAAATATCTCAAAAACCAAGCTAGGAGAATATTTATAACTACCAAAATGTAGAACATAAAATTTTACACAACTTCCTCTTTCCAAAATTCATCTAGCTCTTAAATTAGCCGAGTTACCCCTTTTTGCAAGTCAGAGAGGCGAGAGCGCTCTCGTTTCTCTGCGTCTCCCCCCTCCCTCTCCCTAGTGATGGAGGGCGTGCTTTCCTGGCTTAATTTTAAAACGTTATATCTCAAAAACTAAAACAGCTACTAAATTATTTACAACTACAAAGATGTGTAAAATTTAATGCTTTACAATTTTGTAGTTAAAACAATTTTGCTAGCTATTCYAGTTTTGGAGATACAGCTTGTCAAAAAAGGTAAACTCTTTTTCTCACTATTTTGAGTTTATTTCAAGGACGGTAGGAGCTACAAAAATGGTCCCAACTAGAAAAACGCGCCAAATTACAATCTTAAGCCAAAAAACTTTCAGATGATAACCGCACAACTTGGATTTGTGCAAACGTGGCTGCGAGACGATCAGAATGGCGGCACACTAGCTCCAAGTCTGATTAGTCCCAGATGGAGCTCTTCTGGAAGTGTTGGAATTTCGAAAATCCACGTGTCAAGTGTAGATGTCGAAGAGGATGAGGAGCCACCGACGACTCAGATCTTTTTGTAGTAGATCAAAACTTTTTTGTCTTTTTCGTCATATTTTTTAAGGCATCTCATGTTTTCGGGTCGTTTTTAAAGCTGAAATAAACGTTTTTTTTCAAATCTTCGTGAAAATCGATATTTCTGAAACTATAAAACATCAAGTTAGCTCAAAAATGTGCTCTGGAACCCCTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>294 138 111 109 98 89 80 72 9</canonical_bands>
                <polymorphic_bands>294 138 111 109 107 89 80 72</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCTTATCAGGTAACTTTGAAAC</pcr_primer_p1>
		<pcr_primer_p2>AAACTCAAAATAGTGAGAAAAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>412</pcr_amplicon_size>
		<canonical_amplicon>GGCTTATCAGGTAACTTTGAAACGAAATATCTCAAAAACCAAGCTAGGAGAATATTTATAACTACCAAAATGTAGAACATAAAATTTTACACAACTTCCTCTTTCCAAAATTCATCTAGCTCTTAAATTAGCCGAGTTACCCCTTTTTGCAAGTCAGAGAGGCGAGAGCGCTCTCGTTTCTCTGCGTCTCCCCCCTCCCTCTCCCTAGTGATGGAGGGCGTGCTTTCCTGGCTTAATTTTAAAACGTTATATCTCAAAAACTAAAACAGCTACTAAATTATTTACAACTACAAAGATGTGTAAAATTTAATGCTTTACAATTTTGTAGTTAAAACAATTTTGCTAGCTATTCTAGTTTTGGAGATACAGCTTGTCAAAAAAGGTAAACTCTTTTTCTCACTATTTTGAGTTT</canonical_amplicon>
		<polymorphic_amplicon>GGCTTATCAGGTAACTTTGAAACGAAATATCTCAAAAACCAAGCTAGGAGAATATTTATAACTACCAAAATGTAGAACATAAAATTTTACACAACTTCCTCTTTCCAAAATTCATCTAGCTCTTAAATTAGCCGAGTTACCCCTTTTTGCAAGTCAGAGAGGCGAGAGCGCTCTCGTTTCTCTGCGTCTCCCCCCTCCCTCTCCCTAGTGATGGAGGGCGTGCTTTCCTGGCTTAATTTTAAAACGTTATATCTCAAAAACTAAAACAGCTACTAAATTATTTACAACTACAAAGATGTGTAAAATTTAATGCTTTACAATTTTGTAGTTAAAACAATTTTGCTAGCTATTCYAGTTTTGGAGATACAGCTTGTCAAAAAAGGTAAACTCTTTTTCTCACTATTTTGAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25079</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>407925</contig_pos>
        <strand>+</strand>
        <context>AAATTAATGG[C/T]AAAAAACAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAGAAAAATAATGAGCAGTTTGAAAACTTTGAGGGAGAAAATTAATGG</left_flank>
        <right_flank>AAAAAACAAAAAAAAAGAAATAGGATGGCAACAGGAATGCATAGAAACCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTCTAAAAATTTCAAAAAAATCCGAAAATCTTCAAATTCTAAAAATTCTCGAAATTCTGTAAATTCTAAGAATTTCAAAACATTCAAATATCTGGATTTTTCAGAAAATTTAACGTTTCTAGAAGTTTCAGAATTTAAGACTTCATATTCTGAAAATCTCAAAAAATTGAAAATTCTGAAAATTATAAAAATTGAAAATTCTAAAATAATTAGTTTATAGAGGATTTCAAATTTTCTGAAAATTCAAAAATTTTAACCTTAAAATTTCAGATTTTAACCTTAAAATTTCAGATTTTCAGCAAAAAAGAGCAAGAAAAACGGTGGAAAATGAGCGAAAATAGAGTTTTAGGCCCAAAATAATTTATTTTCGTATTTTTGTTTTTCGAAAAAAAAGGATAAATCCGTTGCCTAGCAACCAAAAGGATCAAAACTCTTTAAGAGAAATTAGAAGAAAAATAATGAGCAGTTTGAAAACTTTGAGGGAGAAAATTAATGGAAAAAAACAAAAAAAAAGAAATAGGATGGCAACAGGAATGCATAGAAACCGAAGAAAAACCCGGAAATCGGATATTGAACCTGAAAATAATTGCGAAATTCAGCCTCAAACCCCTTAAAAACCTATAAACCCCCAAAAAATCCATCAAAAACTATGTAAATCAAGATTTTTCGAAATTTTGGTCAGATGGCCTAGTGGTTTTTTGGACACGAAAATTTAGGAGTCTCAACACCAGGGTTCGATTCCACTCGGTGGCAAACCTTTTTTGCTTTTATTTAGAGTATGGTTTAGGAGTTCCGGATGTTTTTTTTTCAGATTTTCAGATTTTCGGAAAATTTTTTGAAAATTCAAAAATTTCGATTTCCAAAAAGTATCTAATATTGAGGTTTTTTAGTTTAAAAAGTTAAAAGTCATCTCTGGAACCCAAGAAAACCCCCAAAAACTCATGAAAAATCATAAAAATCGCGATTTTTTAAAATTTTGGTCAGATGGCCTGGTGGA</canonical>
            <polymorphic>AAATTCTAAAAATTTCAAAAAAATCCGAAAATCTTCAAATTCTAAAAATTCTCGAAATTCTGTAAATTCTAAGAATTTCAAAACATTCAAATATCTGGATTTTTCAGAAAATTTAACGTTTCTAGAAGTTTCAGAATTTAAGACTTCATATTCTGAAAATCTCAAAAAATTGAAAATTCTGAAAATTATAAAAATTGAAAATTCTAAAATAATTAGTTTATAGAGGATTTCAAATTTTCTGAAAATTCAAAAATTTTAACCTTAAAATTTCAGATTTTAACCTTAAAATTTCAGATTTTCAGCAAAAAAGAGCAAGAAAAACGGTGGAAAATGAGCGAAAATAGAGTTTTAGGCCCAAAATAATTTATTTTCGTATTTTTGTTTTTCGAAAAAAAAGGATAAATCCGTTGCCTAGCAACCAAAAGGATCAAAACTCTTTAAGAGAAATTAGAAGAAAAATAATGAGCAGTTTGAAAACTTTGAGGGAGAAAATTAATGGYAAAAAACAAAAAAAAAGAAATAGGATGGCAACAGGAATGCATAGAAACCGAAGAAAAACCCGGAAATCGGATATTGAACCTGAAAATAATTGCGAAATTCAGCCTCAAACCCCTTAAAAACCTATAAACCCCCAAAAAATCCATCAAAAACTATGTAAATCAAGATTTTTCGAAATTTTGGTCAGATGGCCTAGTGGTTTTTTGGACACGAAAATTTAGGAGTCTCAACACCAGGGTTCGATTCCACTCGGTGGCAAACCTTTTTTGCTTTTATTTAGAGTATGGTTTAGGAGTTCCGGATGTTTTTTTTTCAGATTTTCAGATTTTCGGAAAATTTTTTGAAAATTCAAAAATTTCGATTTCCAAAAAGTATCTAATATTGAGGTTTTTTAGTTTAAAAAGTTAAAAGTCATCTCTGGAACCCAAGAAAACCCCCAAAAACTCATGAAAAATCATAAAAATCGCGATTTTTTAAAATTTTGGTCAGATGGCCTGGTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAGCGAAAATAGAGTTTTAGG</pcr_primer_p1>
		<pcr_primer_p2>CAGGTTCAATATCCGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATGAGCGAAAATAGAGTTTTAGGCCCAAAATAATTTATTTTCGTATTTTTGTTTTTCGAAAAAAAAGGATAAATCCGTTGCCTAGCAACCAAAAGGATCAAAACTCTTTAAGAGAAATTAGAAGAAAAATAATGAGCAGTTTGAAAACTTTGAGGGAGAAAATTAATGGAAAAAAACAAAAAAAAAGAAATAGGATGGCAACAGGAATGCATAGAAACCGAAGAAAAACCCGGAAATCGGATATTGAACCTG</canonical_amplicon>
		<polymorphic_amplicon>ATGAGCGAAAATAGAGTTTTAGGCCCAAAATAATTTATTTTCGTATTTTTGTTTTTCGAAAAAAAAGGATAAATCCGTTGCCTAGCAACCAAAAGGATCAAAACTCTTTAAGAGAAATTAGAAGAAAAATAATGAGCAGTTTGAAAACTTTGAGGGAGAAAATTAATGGYAAAAAACAAAAAAAAAGAAATAGGATGGCAACAGGAATGCATAGAAACCGAAGAAAAACCCGGAAATCGGATATTGAACCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25080</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>409542</contig_pos>
        <strand>+</strand>
        <context>ACAAACTTCC[A/T]GRAAAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGGTTTTTTAATCTAGAAAAATAGAAGGAACACAAAATTACAAACTTCC</left_flank>
        <right_flank>GAAAAAAAAAACATTTTTCTTAAAATTTCTAAATACTATAATTTCTTACT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAATCTTCAAGAATTTTTCAGTTTTGTCAAAAAACAACCGAGTTACGGTAATATTACATTTTTTGGGTCCCACCACGAAAATTTCGAAAAAAACAAAAGTGTTCAAATATAGTCATGTTTATACTCATTTTGAAGCTCTCAATATGGTCAATCTAGGAAAACCATTTTCATGTTGAAAAAAATCGAAATTTGATCTAGTATTTGTCCATTTACAGAATTTTTGCTGTCTCGAAAATTTTGAACTACTGTAACTTTGCTCATATTCCATCAAAATAGTCATATTTATACTTATTTTGAAGCTCTCAATGACCCAAACTCAGATTATTCTAACAGTTGAATTGTCACTTTACTTAATTGCGGTTTTTGGTGGGGTTTCAATTTATCGAAAATTCGGAAAGTACTAAATGATAAAACATTTTTTTTTTTGATCCTACCTAGTTAACAAATTTGGTTTTTTAATCTAGAAAAATAGAAGGAACACAAAATTACAAACTTCCAGAAAAAAAAAACATTTTTCTTAAAATTTCTAAATACTATAATTTCTTACTGTCCAAATTATCCTAATTAACTGAAACGTCTTTTTTTCAGACTGTGCTTAAAAGTGCTATTGTTGCTGAGCCATAACACTTCGAAACTTGGTAATAATCCAAATAATTTATATAATTGATCAAAATAAAAATAAATAATTAAGTATTTTTGTAATTAAAACTTCTGAATTGCATTCTTCAAATCCTCTCTAGCCTTCTGTTTCTCCTTTTTGCTAGCCTTTCCTGTAAGATATAAACAATTATTTTCCGCAAAAAGAATTAATTGGTCCAATTAACACTCACCGTTAATTATGCCAGTCAATTTACAAAATGGGCAACATCTCCAATCGTTTCCACCATGTTTTAGGACACATTCTCTGCATACCGTATGCGAACAACCTAACTGTCGTTTCACAATTCGCACGGTTTCGTACAATTTGTCTTGGTCCATAGAAATTGCTAAACAGGCAA</canonical>
            <polymorphic>CAAAATCTTCAAGAATTTTTCAGTTTTGTCAAAAAACAACCGAGTTACGGTAATATTACATTTTTTGGGTCCCACCACGAAAATTTCGAAAAAAACAAAAGTGTTCAAATATAGTCATGTTTATACTCATTTTGAAGCTCTCAATATGGTCAATCTAGGAAAACCATTTTCATGTTGAAAAAAATCGAAATTTGATCTAGTATTTGTCCATTTACAGAATTTTTGCTGTCTCGAAAATTTTGAACTACTGTAACTTTGCTCATATTCCATCAAAATAGTCATATTTATACTTATTTTGAAGCTCTCAATGACCCAAACTCAGATTATTCTAACAGTTGAATTGTCACTTTACTTAATTGCGGTTTTTGGTGGGGTTTCAATTTATCGAAAATTCGGAAAGTACTAAATGATAAAACATTTTTTTTTTTGATCCTACCTAGTTAACAAATTTGGTTTTTTAATCTAGAAAAATAGAAGGAACACAAAATTACAAACTTCCWGAAAAAAAAAACATTTTTCTTAAAATTTCTAAATACTATAATTTCTTACTGTCCAAATTATCCTAATTAACTGAAACGTCTTTTTTTCAGACTGTGCTTAAAAGTGCTATTGTTGCTGAGCCATAACACTTCGAAACTTGGTAATAATCCAAATAATTTATATAATTGATCAAAATAAAAATAAATAATTAAGTATTTTTGTAATTAAAACTTCTGAATTGCATTCTTCAAATCCTCTCTAGCCTTCTGTTTCTCCTTTTTGCTAGCCTTTCCTGTAAGATATAAACAATTATTTTCCGCAAAAAGAATTAATTGGTCCAATTAACACTCACCGTTAATTATGCCAGTCAATTTACAAAATGGGCAACATCTCCAATCGTTTCCACCATGTTTTAGGACACATTCTCTGCATACCGTATGCGAACAACCTAACTGTCGTTTCACAATTCGCACGGTTTCGTACAATTTGTCTTGGTCCATAGAAATTGCTAAACAGGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGAAAGTACTAAATGATAAAACA</pcr_primer_p1>
		<pcr_primer_p2>TTACCAAGTTTCGAAGTGTTATG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CGGAAAGTACTAAATGATAAAACATTTTTTTTTTTGATCCTACCTAGTTAACAAATTTGGTTTTTTAATCTAGAAAAATAGAAGGAACACAAAATTACAAACTTCCAGAAAAAAAAAACATTTTTCTTAAAATTTCTAAATACTATAATTTCTTACTGTCCAAATTATCCTAATTAACTGAAACGTCTTTTTTTCAGACTGTGCTTAAAAGTGCTATTGTTGCTGAGCCATAACACTTCGAAACTTGGTAA</canonical_amplicon>
		<polymorphic_amplicon>CGGAAAGTACTAAATGATAAAACATTTTTTTTTTTGATCCTACCTAGTTAACAAATTTGGTTTTTTAATCTAGAAAAATAGAAGGAACACAAAATTACAAACTTCCWGAAAAAAAAAACATTTTTCTTAAAATTTCTAAATACTATAATTTCTTACTGTCCAAATTATCCTAATTAACTGAAACGTCTTTTTTTCAGACTGTGCTTAAAAGTGCTATTGTTGCTGAGCCATAACACTTCGAAACTTGGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25081</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>409544</contig_pos>
        <strand>+</strand>
        <context>AAACTTCCWG[A/G]AAAAAAAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTTTTTTAATCTAGAAAAATAGAAGGAACACAAAATTACAAACTTCCAG</left_flank>
        <right_flank>AAAAAAAAACATTTTTCTTAAAATTTCTAAATACTATAATTTCTTACTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATCTTCAAGAATTTTTCAGTTTTGTCAAAAAACAACCGAGTTACGGTAATATTACATTTTTTGGGTCCCACCACGAAAATTTCGAAAAAAACAAAAGTGTTCAAATATAGTCATGTTTATACTCATTTTGAAGCTCTCAATATGGTCAATCTAGGAAAACCATTTTCATGTTGAAAAAAATCGAAATTTGATCTAGTATTTGTCCATTTACAGAATTTTTGCTGTCTCGAAAATTTTGAACTACTGTAACTTTGCTCATATTCCATCAAAATAGTCATATTTATACTTATTTTGAAGCTCTCAATGACCCAAACTCAGATTATTCTAACAGTTGAATTGTCACTTTACTTAATTGCGGTTTTTGGTGGGGTTTCAATTTATCGAAAATTCGGAAAGTACTAAATGATAAAACATTTTTTTTTTTGATCCTACCTAGTTAACAAATTTGGTTTTTTAATCTAGAAAAATAGAAGGAACACAAAATTACAAACTTCCAGAAAAAAAAAACATTTTTCTTAAAATTTCTAAATACTATAATTTCTTACTGTCCAAATTATCCTAATTAACTGAAACGTCTTTTTTTCAGACTGTGCTTAAAAGTGCTATTGTTGCTGAGCCATAACACTTCGAAACTTGGTAATAATCCAAATAATTTATATAATTGATCAAAATAAAAATAAATAATTAAGTATTTTTGTAATTAAAACTTCTGAATTGCATTCTTCAAATCCTCTCTAGCCTTCTGTTTCTCCTTTTTGCTAGCCTTTCCTGTAAGATATAAACAATTATTTTCCGCAAAAAGAATTAATTGGTCCAATTAACACTCACCGTTAATTATGCCAGTCAATTTACAAAATGGGCAACATCTCCAATCGTTTCCACCATGTTTTAGGACACATTCTCTGCATACCGTATGCGAACAACCTAACTGTCGTTTCACAATTCGCACGGTTTCGTACAATTTGTCTTGGTCCATAGAAATTGCTAAACAGGCAAAA</canonical>
            <polymorphic>AAATCTTCAAGAATTTTTCAGTTTTGTCAAAAAACAACCGAGTTACGGTAATATTACATTTTTTGGGTCCCACCACGAAAATTTCGAAAAAAACAAAAGTGTTCAAATATAGTCATGTTTATACTCATTTTGAAGCTCTCAATATGGTCAATCTAGGAAAACCATTTTCATGTTGAAAAAAATCGAAATTTGATCTAGTATTTGTCCATTTACAGAATTTTTGCTGTCTCGAAAATTTTGAACTACTGTAACTTTGCTCATATTCCATCAAAATAGTCATATTTATACTTATTTTGAAGCTCTCAATGACCCAAACTCAGATTATTCTAACAGTTGAATTGTCACTTTACTTAATTGCGGTTTTTGGTGGGGTTTCAATTTATCGAAAATTCGGAAAGTACTAAATGATAAAACATTTTTTTTTTTGATCCTACCTAGTTAACAAATTTGGTTTTTTAATCTAGAAAAATAGAAGGAACACAAAATTACAAACTTCCAGRAAAAAAAAACATTTTTCTTAAAATTTCTAAATACTATAATTTCTTACTGTCCAAATTATCCTAATTAACTGAAACGTCTTTTTTTCAGACTGTGCTTAAAAGTGCTATTGTTGCTGAGCCATAACACTTCGAAACTTGGTAATAATCCAAATAATTTATATAATTGATCAAAATAAAAATAAATAATTAAGTATTTTTGTAATTAAAACTTCTGAATTGCATTCTTCAAATCCTCTCTAGCCTTCTGTTTCTCCTTTTTGCTAGCCTTTCCTGTAAGATATAAACAATTATTTTCCGCAAAAAGAATTAATTGGTCCAATTAACACTCACCGTTAATTATGCCAGTCAATTTACAAAATGGGCAACATCTCCAATCGTTTCCACCATGTTTTAGGACACATTCTCTGCATACCGTATGCGAACAACCTAACTGTCGTTTCACAATTCGCACGGTTTCGTACAATTTGTCTTGGTCCATAGAAATTGCTAAACAGGCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>504 233 220 35 8</canonical_bands>
                <polymorphic_bands>539 233 220 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGAAAGTACTAAATGATAAAACA</pcr_primer_p1>
		<pcr_primer_p2>TTACCAAGTTTCGAAGTGTTATG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CGGAAAGTACTAAATGATAAAACATTTTTTTTTTTGATCCTACCTAGTTAACAAATTTGGTTTTTTAATCTAGAAAAATAGAAGGAACACAAAATTACAAACTTCCAGAAAAAAAAAACATTTTTCTTAAAATTTCTAAATACTATAATTTCTTACTGTCCAAATTATCCTAATTAACTGAAACGTCTTTTTTTCAGACTGTGCTTAAAAGTGCTATTGTTGCTGAGCCATAACACTTCGAAACTTGGTAA</canonical_amplicon>
		<polymorphic_amplicon>CGGAAAGTACTAAATGATAAAACATTTTTTTTTTTGATCCTACCTAGTTAACAAATTTGGTTTTTTAATCTAGAAAAATAGAAGGAACACAAAATTACAAACTTCCAGRAAAAAAAAACATTTTTCTTAAAATTTCTAAATACTATAATTTCTTACTGTCCAAATTATCCTAATTAACTGAAACGTCTTTTTTTCAGACTGTGCTTAAAAGTGCTATTGTTGCTGAGCCATAACACTTCGAAACTTGGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25082</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>409556</contig_pos>
        <strand></strand>
        <context>AAAAAAAACA[T/G]TTTTCTTAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TAGAAAAATAGAAGGAACACAAAATTACAAACTTCCAGAAAAAAAAAACA</left_flank>
        <right_flank>TTTTCTTAAAATTTCTAAATACTATAATTTCTTACTGTCCAAATTATCCT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTCAGTTTTGTCAAAAAACAACCGAGTTACGGTAATATTACATTTTTTGGGTCCCACCACGAAAATTTCGAAAAAAACAAAAGTGTTCAAATATAGTCATGTTTATACTCATTTTGAAGCTCTCAATATGGTCAATCTAGGAAAACCATTTTCATGTTGAAAAAAATCGAAATTTGATCTAGTATTTGTCCATTTACAGAATTTTTGCTGTCTCGAAAATTTTGAACTACTGTAACTTTGCTCATATTCCATCAAAATAGTCATATTTATACTTATTTTGAAGCTCTCAATGACCCAAACTCAGATTATTCTAACAGTTGAATTGTCACTTTACTTAATTGCGGTTTTTGGTGGGGTTTCAATTTATCGAAAATTCGGAAAGTACTAAATGATAAAACATTTTTTTTTTTGATCCTACCTAGTTAACAAATTTGGTTTTTTAATCTAGAAAAATAGAAGGAACACAAAATTACAAACTTCCAGAAAAAAAAAACATTTTTCTTAAAATTTCTAAATACTATAATTTCTTACTGTCCAAATTATCCTAATTAACTGAAACGTCTTTTTTTCAGACTGTGCTTAAAAGTGCTATTGTTGCTGAGCCATAACACTTCGAAACTTGGTAATAATCCAAATAATTTATATAATTGATCAAAATAAAAATAAATAATTAAGTATTTTTGTAATTAAAACTTCTGAATTGCATTCTTCAAATCCTCTCTAGCCTTCTGTTTCTCCTTTTTGCTAGCCTTTCCTGTAAGATATAAACAATTATTTTCCGCAAAAAGAATTAATTGGTCCAATTAACACTCACCGTTAATTATGCCAGTCAATTTACAAAATGGGCAACATCTCCAATCGTTTCCACCATGTTTTAGGACACATTCTCTGCATACCGTATGCGAACAACCTAACTGTCGTTTCACAATTCGCACGGTTTCGTACAATTTGTCTTGGTCCATAGAAATTGCTAAACAGGCAAAAACACACATTTTA</canonical>
            <polymorphic>ATTTTTCAGTTTTGTCAAAAAACAACCGAGTTACGGTAATATTACATTTTTTGGGTCCCACCACGAAAATTTCGAAAAAAACAAAAGTGTTCAAATATAGTCATGTTTATACTCATTTTGAAGCTCTCAATATGGTCAATCTAGGAAAACCATTTTCATGTTGAAAAAAATCGAAATTTGATCTAGTATTTGTCCATTTACAGAATTTTTGCTGTCTCGAAAATTTTGAACTACTGTAACTTTGCTCATATTCCATCAAAATAGTCATATTTATACTTATTTTGAAGCTCTCAATGACCCAAACTCAGATTATTCTAACAGTTGAATTGTCACTTTACTTAATTGCGGTTTTTGGTGGGGTTTCAATTTATCGAAAATTCGGAAAGTACTAAATGATAAAACATTTTTTTTTTTGATCCTACCTAGTTAACAAATTTGGTTTTTTAATCTAGAAAAATAGAAGGAACACAAAATTACAAACTTCCAGAAAAAAAAAACAKTTTTCTTAAAATTTCTAAATACTATAATTTCTTACTGTCCAAATTATCCTAATTAACTGAAACGTCTTTTTTTCAGACTGTGCTTAAAAGTGCTATTGTTGCTGAGCCATAACACTTCGAAACTTGGTAATAATCCAAATAATTTATATAATTGATCAAAATAAAAATAAATAATTAAGTATTTTTGTAATTAAAACTTCTGAATTGCATTCTTCAAATCCTCTCTAGCCTTCTGTTTCTCCTTTTTGCTAGCCTTTCCTGTAAGATATAAACAATTATTTTCCGCAAAAAGAATTAATTGGTCCAATTAACACTCACCGTTAATTATGCCAGTCAATTTACAAAATGGGCAACATCTCCAATCGTTTCCACCATGTTTTAGGACACATTCTCTGCATACCGTATGCGAACAACCTAACTGTCGTTTCACAATTCGCACGGTTTCGTACAATTTGTCTTGGTCCATAGAAATTGCTAAACAGGCAAAAACACACATTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGAAAGTACTAAATGATAAAACA</pcr_primer_p1>
		<pcr_primer_p2>TTACCAAGTTTCGAAGTGTTATG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CGGAAAGTACTAAATGATAAAACATTTTTTTTTTTGATCCTACCTAGTTAACAAATTTGGTTTTTTAATCTAGAAAAATAGAAGGAACACAAAATTACAAACTTCCAGAAAAAAAAAACATTTTTCTTAAAATTTCTAAATACTATAATTTCTTACTGTCCAAATTATCCTAATTAACTGAAACGTCTTTTTTTCAGACTGTGCTTAAAAGTGCTATTGTTGCTGAGCCATAACACTTCGAAACTTGGTAA</canonical_amplicon>
		<polymorphic_amplicon>CGGAAAGTACTAAATGATAAAACATTTTTTTTTTTGATCCTACCTAGTTAACAAATTTGGTTTTTTAATCTAGAAAAATAGAAGGAACACAAAATTACAAACTTCCAGAAAAAAAAAACAKTTTTCTTAAAATTTCTAAATACTATAATTTCTTACTGTCCAAATTATCCTAATTAACTGAAACGTCTTTTTTTCAGACTGTGCTTAAAAGTGCTATTGTTGCTGAGCCATAACACTTCGAAACTTGGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25083</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>409567</contig_pos>
        <strand></strand>
        <context>TTTTCTTAAA[A/G]TTTCTAAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGGAACACAAAATTACAAACTTCCAGAAAAAAAAAACATTTTTCTTAAA</left_flank>
        <right_flank>TTTCTAAATACTATAATTTCTTACTGTCCAAATTATCCTAATTAACTGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTCAAAAAACAACCGAGTTACGGTAATATTACATTTTTTGGGTCCCACCACGAAAATTTCGAAAAAAACAAAAGTGTTCAAATATAGTCATGTTTATACTCATTTTGAAGCTCTCAATATGGTCAATCTAGGAAAACCATTTTCATGTTGAAAAAAATCGAAATTTGATCTAGTATTTGTCCATTTACAGAATTTTTGCTGTCTCGAAAATTTTGAACTACTGTAACTTTGCTCATATTCCATCAAAATAGTCATATTTATACTTATTTTGAAGCTCTCAATGACCCAAACTCAGATTATTCTAACAGTTGAATTGTCACTTTACTTAATTGCGGTTTTTGGTGGGGTTTCAATTTATCGAAAATTCGGAAAGTACTAAATGATAAAACATTTTTTTTTTTGATCCTACCTAGTTAACAAATTTGGTTTTTTAATCTAGAAAAATAGAAGGAACACAAAATTACAAACTTCCAGAAAAAAAAAACATTTTTCTTAAAATTTCTAAATACTATAATTTCTTACTGTCCAAATTATCCTAATTAACTGAAACGTCTTTTTTTCAGACTGTGCTTAAAAGTGCTATTGTTGCTGAGCCATAACACTTCGAAACTTGGTAATAATCCAAATAATTTATATAATTGATCAAAATAAAAATAAATAATTAAGTATTTTTGTAATTAAAACTTCTGAATTGCATTCTTCAAATCCTCTCTAGCCTTCTGTTTCTCCTTTTTGCTAGCCTTTCCTGTAAGATATAAACAATTATTTTCCGCAAAAAGAATTAATTGGTCCAATTAACACTCACCGTTAATTATGCCAGTCAATTTACAAAATGGGCAACATCTCCAATCGTTTCCACCATGTTTTAGGACACATTCTCTGCATACCGTATGCGAACAACCTAACTGTCGTTTCACAATTCGCACGGTTTCGTACAATTTGTCTTGGTCCATAGAAATTGCTAAACAGGCAAAAACACACATTTTAAGTACAAAAGC</canonical>
            <polymorphic>TTGTCAAAAAACAACCGAGTTACGGTAATATTACATTTTTTGGGTCCCACCACGAAAATTTCGAAAAAAACAAAAGTGTTCAAATATAGTCATGTTTATACTCATTTTGAAGCTCTCAATATGGTCAATCTAGGAAAACCATTTTCATGTTGAAAAAAATCGAAATTTGATCTAGTATTTGTCCATTTACAGAATTTTTGCTGTCTCGAAAATTTTGAACTACTGTAACTTTGCTCATATTCCATCAAAATAGTCATATTTATACTTATTTTGAAGCTCTCAATGACCCAAACTCAGATTATTCTAACAGTTGAATTGTCACTTTACTTAATTGCGGTTTTTGGTGGGGTTTCAATTTATCGAAAATTCGGAAAGTACTAAATGATAAAACATTTTTTTTTTTGATCCTACCTAGTTAACAAATTTGGTTTTTTAATCTAGAAAAATAGAAGGAACACAAAATTACAAACTTCCAGAAAAAAAAAACATTTTTCTTAAARTTTCTAAATACTATAATTTCTTACTGTCCAAATTATCCTAATTAACTGAAACGTCTTTTTTTCAGACTGTGCTTAAAAGTGCTATTGTTGCTGAGCCATAACACTTCGAAACTTGGTAATAATCCAAATAATTTATATAATTGATCAAAATAAAAATAAATAATTAAGTATTTTTGTAATTAAAACTTCTGAATTGCATTCTTCAAATCCTCTCTAGCCTTCTGTTTCTCCTTTTTGCTAGCCTTTCCTGTAAGATATAAACAATTATTTTCCGCAAAAAGAATTAATTGGTCCAATTAACACTCACCGTTAATTATGCCAGTCAATTTACAAAATGGGCAACATCTCCAATCGTTTCCACCATGTTTTAGGACACATTCTCTGCATACCGTATGCGAACAACCTAACTGTCGTTTCACAATTCGCACGGTTTCGTACAATTTGTCTTGGTCCATAGAAATTGCTAAACAGGCAAAAACACACATTTTAAGTACAAAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>502 154 107 77 57 56 29 18</canonical_bands>
                <polymorphic_bands>579 154 107 57 56 29 18</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>107 103 95 90 71 57 56 42 39 38 29 24 23 20 19 19 18 17 16 16 16 16 14 13 11 9 9 9 4</canonical_bands>
                <polymorphic_bands>107 103 95 90 71 57 56 54 42 39 29 24 23 20 19 19 18 17 16 16 16 14 13 11 9 9 9 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGAAAGTACTAAATGATAAAACA</pcr_primer_p1>
		<pcr_primer_p2>TTACCAAGTTTCGAAGTGTTATG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CGGAAAGTACTAAATGATAAAACATTTTTTTTTTTGATCCTACCTAGTTAACAAATTTGGTTTTTTAATCTAGAAAAATAGAAGGAACACAAAATTACAAACTTCCAGAAAAAAAAAACATTTTTCTTAAAATTTCTAAATACTATAATTTCTTACTGTCCAAATTATCCTAATTAACTGAAACGTCTTTTTTTCAGACTGTGCTTAAAAGTGCTATTGTTGCTGAGCCATAACACTTCGAAACTTGGTAA</canonical_amplicon>
		<polymorphic_amplicon>CGGAAAGTACTAAATGATAAAACATTTTTTTTTTTGATCCTACCTAGTTAACAAATTTGGTTTTTTAATCTAGAAAAATAGAAGGAACACAAAATTACAAACTTCCAGAAAAAAAAAACATTTTTCTTAAARTTTCTAAATACTATAATTTCTTACTGTCCAAATTATCCTAATTAACTGAAACGTCTTTTTTTCAGACTGTGCTTAAAAGTGCTATTGTTGCTGAGCCATAACACTTCGAAACTTGGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25084</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>409741</contig_pos>
        <strand></strand>
        <context>ttaagtattt[T/A]tgtaattaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CCAAATAATTTATATAATTGATCAAAATAAAAATAAATAATTAAGTATTT</left_flank>
        <right_flank>TGTAATTAAAACTTCTGAATTGCATTCTTCAAATCCTCTCTAGCCTTCTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATTTGTCCATTTACAGAATTTTTGCTGTCTCGAAAATTTTGAACTACTGTAACTTTGCTCATATTCCATCAAAATAGTCATATTTATACTTATTTTGAAGCTCTCAATGACCCAAACTCAGATTATTCTAACAGTTGAATTGTCACTTTACTTAATTGCGGTTTTTGGTGGGGTTTCAATTTATCGAAAATTCGGAAAGTACTAAATGATAAAACATTTTTTTTTTTGATCCTACCTAGTTAACAAATTTGGTTTTTTAATCTAGAAAAATAGAAGGAACACAAAATTACAAACTTCCAGAAAAAAAAAACATTTTTCTTAAAATTTCTAAATACTATAATTTCTTACTGTCCAAATTATCCTAATTAACTGAAACGTCTTTTTTTCAGACTGTGCTTAAAAGTGCTATTGTTGCTGAGCCATAACACTTCGAAACTTGGTAATAATCCAAATAATTTATATAATTGATCAAAATAAAAATAAATAATTAAGTATTTTTGTAATTAAAACTTCTGAATTGCATTCTTCAAATCCTCTCTAGCCTTCTGTTTCTCCTTTTTGCTAGCCTTTCCTGTAAGATATAAACAATTATTTTCCGCAAAAAGAATTAATTGGTCCAATTAACACTCACCGTTAATTATGCCAGTCAATTTACAAAATGGGCAACATCTCCAATCGTTTCCACCATGTTTTAGGACACATTCTCTGCATACCGTATGCGAACAACCTAACTGTCGTTTCACAATTCGCACGGTTTCGTACAATTTGTCTTGGTCCATAGAAATTGCTAAACAGGCAAAAACACACATTTTAAGTACAAAAGCAGCAAGTGCCGACTAAAAATGAAAGAGGAGATCGACTTTGAAGCAATTTTCGAAAAATCGCGGTATCTTTTCTCACCGCGAGAGATTTTAATCGAATAATAGCTTGAAACACTCAAAAATAGATTCTTTACAATAATTTGACAAAAGAAATTATTAAAACACCGAACAATTTGA</canonical>
            <polymorphic>GTATTTGTCCATTTACAGAATTTTTGCTGTCTCGAAAATTTTGAACTACTGTAACTTTGCTCATATTCCATCAAAATAGTCATATTTATACTTATTTTGAAGCTCTCAATGACCCAAACTCAGATTATTCTAACAGTTGAATTGTCACTTTACTTAATTGCGGTTTTTGGTGGGGTTTCAATTTATCGAAAATTCGGAAAGTACTAAATGATAAAACATTTTTTTTTTTGATCCTACCTAGTTAACAAATTTGGTTTTTTAATCTAGAAAAATAGAAGGAACACAAAATTACAAACTTCCAGAAAAAAAAAACATTTTTCTTAAAATTTCTAAATACTATAATTTCTTACTGTCCAAATTATCCTAATTAACTGAAACGTCTTTTTTTCAGACTGTGCTTAAAAGTGCTATTGTTGCTGAGCCATAACACTTCGAAACTTGGTAATAATCCAAATAATTTATATAATTGATCAAAATAAAAATAAATAATTAAGTATTTWTGTAATTAAAACTTCTGAATTGCATTCTTCAAATCCTCTCTAGCCTTCTGTTTCTCCTTTTTGCTAGCCTTTCCTGTAAGATATAAACAATTATTTTCCGCAAAAAGAATTAATTGGTCCAATTAACACTCACCGTTAATTATGCCAGTCAATTTACAAAATGGGCAACATCTCCAATCGTTTCCACCATGTTTTAGGACACATTCTCTGCATACCGTATGCGAACAACCTAACTGTCGTTTCACAATTCGCACGGTTTCGTACAATTTGTCTTGGTCCATAGAAATTGCTAAACAGGCAAAAACACACATTTTAAGTACAAAAGCAGCAAGTGCCGACTAAAAATGAAAGAGGAGATCGACTTTGAAGCAATTTTCGAAAAATCGCGGTATCTTTTCTCACCGCGAGAGATTTTAATCGAATAATAGCTTGAAACACTCAAAAATAGATTCTTTACAATAATTTGACAAAAGAAATTATTAAAACACCGAACAATTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAAATTATCCTAATTAACTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TGCGGAAAATAATTGTTTATATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCAAATTATCCTAATTAACTGAAACGTCTTTTTTTCAGACTGTGCTTAAAAGTGCTATTGTTGCTGAGCCATAACACTTCGAAACTTGGTAATAATCCAAATAATTTATATAATTGATCAAAATAAAAATAAATAATTAAGTATTTTTGTAATTAAAACTTCTGAATTGCATTCTTCAAATCCTCTCTAGCCTTCTGTTTCTCCTTTTTGCTAGCCTTTCCTGTAAGATATAAACAATTATTTTCCGCA</canonical_amplicon>
		<polymorphic_amplicon>TCCAAATTATCCTAATTAACTGAAACGTCTTTTTTTCAGACTGTGCTTAAAAGTGCTATTGTTGCTGAGCCATAACACTTCGAAACTTGGTAATAATCCAAATAATTTATATAATTGATCAAAATAAAAATAAATAATTAAGTATTTWTGTAATTAAAACTTCTGAATTGCATTCTTCAAATCCTCTCTAGCCTTCTGTTTCTCCTTTTTGCTAGCCTTTCCTGTAAGATATAAACAATTATTTTCCGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25085</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>452404</contig_pos>
        <strand></strand>
        <context>cgctcagcat[T/A]aaattygaca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGAACGATAGAAGCTATCAAAATGTTGTCAACTCCAAAATCGCTCAGCAT</left_flank>
        <right_flank>AAATTCGACATATTTTTGTAGTTTTGCCCTTCCTGCTAGCTACCGAGGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTCCGCCCATTTTGGGGCCAAACCAGGAATTCTCTTATTTATCTCGCCATTATATCAAAACCCAATGATATATTCTAACTGTTTCTCAGGGACGTTTTACGTTTTACCTTACCTATCCGTCGTTTCTCTAGACCCTCTCGATTTCCCATACTATTTCCTTTTTCCTTTTTCGAAAATGTTGCACTTTTCGTATGCGAAAAAACCGTTAAACCGCCCATCTCGGGGGTAGAAGATGGCGAAGACCCGTGTAGATATTCTGTTATTGATGATTTATCTGATCGAAACGGTCGGAGGGAATGTTCTCGAAGACCGAAAAATAAAAAGAAAATACGGGCGGTCGTTTTTCCATTAGGAGACGATAACTGATGACGACAAGGCAAATTTTTGCAACATAAGTTTTCATGAAAATCGGGGGTGGAGCGCGCCAACTTTAAAGGCGCATATCTCAAGAACGATAGAAGCTATCAAAATGTTGTCAACTCCAAAATCGCTCAGCATTAAATTCGACATATTTTTGTAGTTTTGCCCTTCCTGCTAGCTACCGAGGTTTTGAAGATATGCGCCTTTAAAGTTAACGCGTGCAAATGTGGGATGGGTGAGACGCTGGCGCCGCGCAAAAGTTTAAAGGCGCGTATCTCAAGAACGATAAAAGCAATTAAATTTTTGTTAATTACGAAATTGCTCAGCATAAAATTTGGCATACTTTTATAATTTACCTCTTTTTGCTAGCTACCGTAGTTTTTGAGATATGCACCTTTAAAGCTAGCTCACCCTTGTCTACCGCTTCCTCTGTCACATGAAAGGGGGCGGCGGGTGGTTAACTTTAAAGACGCATATCTCTAAAACGACTGTAGCTAACAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATGCTGAGCAATTTTGTAGTTGACAGTTTTTAAATAGCTTTTTTATTTTTTTCGATATGAATTTTTGAGAAAGTTCGGATTTTTTTAAAATTTCAAACCGAAATC</canonical>
            <polymorphic>GCTCCGCCCATTTTGGGGCCAAACCAGGAATTCTCTTATTTATCTCGCCATTATATCAAAACCCAATGATATATTCTAACTGTTTCTCAGGGACGTTTTACGTTTTACCTTACCTATCCGTCGTTTCTCTAGACCCTCTCGATTTCCCATACTATTTCCTTTTTCCTTTTTCGAAAATGTTGCACTTTTCGTATGCGAAAAAACCGTTAAACCGCCCATCTCGGGGGTAGAAGATGGCGAAGACCCGTGTAGATATTCTGTTATTGATGATTTATCTGATCGAAACGGTCGGAGGGAATGTTCTCGAAGACCGAAAAATAAAAAGAAAATACGGGCGGTCGTTTTTCCATTAGGAGACGATAACTGATGACGACAAGGCAAATTTTTGCAACATAAGTTTTCATGAAAATCGGGGGTGGAGCGCGCCAACTTTAAAGGCGCATATCTCAAGAACGATAGAAGCTATCAAAATGTTGTCAACTCCAAAATCGCTCAGCATWAAATTCGACATATTTTTGTAGTTTTGCCCTTCCTGCTAGCTACCGAGGTTTTGAAGATATGCGCCTTTAAAGTTAACGCGTGCAAATGTGGGATGGGTGAGACGCTGGCGCCGCGCAAAAGTTTAAAGGCGCGTATCTCAAGAACGATAAAAGCAATTAAATTTTTGTTAATTACGAAATTGCTCAGCATAAAATTTGGCATACTTTTATAATTTACCTCTTTTTGCTAGCTACCGTAGTTTTTGAGATATGCACCTTTAAAGCTAGCTCACCCTTGTCTACCGCTTCCTCTGTCACATGAAAGGGGGCGGCGGGTGGTTAACTTTAAAGACGCATATCTCTAAAACGACTGTAGCTAACAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATGCTGAGCAATTTTGTAGTTGACAGTTTTTAAATAGCTTTTTTATTTTTTTCGATATGAATTTTTGAGAAAGTTCGGATTTTTTTAAAATTTCAAACCGAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>225 207 100 90 68 67 61 55 50 34 20 11 6 6</canonical_bands>
                <polymorphic_bands>225 207 135 100 90 61 55 50 34 20 11 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTGCAACATAAGTTTTCAT</pcr_primer_p1>
		<pcr_primer_p2>TGTAACTGATTTCGGTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>626</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTGCAACATAAGTTTTCATGAAAATCGGGGGTGGAGCGCGCCAACTTTAAAGGCGCATATCTCAAGAACGATAGAAGCTATCAAAATGTTGTCAACTCCAAAATCGCTCAGCATTAAATTCGACATATTTTTGTA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTGCAACATAAGTTTTCATGAAAATCGGGGGTGGAGCGCGCCAACTTTAAAGGCGCATATCTCAAGAACGATAGAAGCTATCAAAATGTTGTCAACTCCAAAATCGCTCAGCATWAAATTCGACATATTTTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25086</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>452410</contig_pos>
        <strand></strand>
        <context>gcatwaaatt[C/T]gacatatttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAGAAGCTATCAAAATGTTGTCAACTCCAAAATCGCTCAGCATTAAATT</left_flank>
        <right_flank>GACATATTTTTGTAGTTTTGCCCTTCCTGCTAGCTACCGAGGTTTTGAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCATTTTGGGGCCAAACCAGGAATTCTCTTATTTATCTCGCCATTATATCAAAACCCAATGATATATTCTAACTGTTTCTCAGGGACGTTTTACGTTTTACCTTACCTATCCGTCGTTTCTCTAGACCCTCTCGATTTCCCATACTATTTCCTTTTTCCTTTTTCGAAAATGTTGCACTTTTCGTATGCGAAAAAACCGTTAAACCGCCCATCTCGGGGGTAGAAGATGGCGAAGACCCGTGTAGATATTCTGTTATTGATGATTTATCTGATCGAAACGGTCGGAGGGAATGTTCTCGAAGACCGAAAAATAAAAAGAAAATACGGGCGGTCGTTTTTCCATTAGGAGACGATAACTGATGACGACAAGGCAAATTTTTGCAACATAAGTTTTCATGAAAATCGGGGGTGGAGCGCGCCAACTTTAAAGGCGCATATCTCAAGAACGATAGAAGCTATCAAAATGTTGTCAACTCCAAAATCGCTCAGCATTAAATTCGACATATTTTTGTAGTTTTGCCCTTCCTGCTAGCTACCGAGGTTTTGAAGATATGCGCCTTTAAAGTTAACGCGTGCAAATGTGGGATGGGTGAGACGCTGGCGCCGCGCAAAAGTTTAAAGGCGCGTATCTCAAGAACGATAAAAGCAATTAAATTTTTGTTAATTACGAAATTGCTCAGCATAAAATTTGGCATACTTTTATAATTTACCTCTTTTTGCTAGCTACCGTAGTTTTTGAGATATGCACCTTTAAAGCTAGCTCACCCTTGTCTACCGCTTCCTCTGTCACATGAAAGGGGGCGGCGGGTGGTTAACTTTAAAGACGCATATCTCTAAAACGACTGTAGCTAACAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATGCTGAGCAATTTTGTAGTTGACAGTTTTTAAATAGCTTTTTTATTTTTTTCGATATGAATTTTTGAGAAAGTTCGGATTTTTTTAAAATTTCAAACCGAAATCAGTTAC</canonical>
            <polymorphic>CCCATTTTGGGGCCAAACCAGGAATTCTCTTATTTATCTCGCCATTATATCAAAACCCAATGATATATTCTAACTGTTTCTCAGGGACGTTTTACGTTTTACCTTACCTATCCGTCGTTTCTCTAGACCCTCTCGATTTCCCATACTATTTCCTTTTTCCTTTTTCGAAAATGTTGCACTTTTCGTATGCGAAAAAACCGTTAAACCGCCCATCTCGGGGGTAGAAGATGGCGAAGACCCGTGTAGATATTCTGTTATTGATGATTTATCTGATCGAAACGGTCGGAGGGAATGTTCTCGAAGACCGAAAAATAAAAAGAAAATACGGGCGGTCGTTTTTCCATTAGGAGACGATAACTGATGACGACAAGGCAAATTTTTGCAACATAAGTTTTCATGAAAATCGGGGGTGGAGCGCGCCAACTTTAAAGGCGCATATCTCAAGAACGATAGAAGCTATCAAAATGTTGTCAACTCCAAAATCGCTCAGCATTAAATTYGACATATTTTTGTAGTTTTGCCCTTCCTGCTAGCTACCGAGGTTTTGAAGATATGCGCCTTTAAAGTTAACGCGTGCAAATGTGGGATGGGTGAGACGCTGGCGCCGCGCAAAAGTTTAAAGGCGCGTATCTCAAGAACGATAAAAGCAATTAAATTTTTGTTAATTACGAAATTGCTCAGCATAAAATTTGGCATACTTTTATAATTTACCTCTTTTTGCTAGCTACCGTAGTTTTTGAGATATGCACCTTTAAAGCTAGCTCACCCTTGTCTACCGCTTCCTCTGTCACATGAAAGGGGGCGGCGGGTGGTTAACTTTAAAGACGCATATCTCTAAAACGACTGTAGCTAACAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATGCTGAGCAATTTTGTAGTTGACAGTTTTTAAATAGCTTTTTTATTTTTTTCGATATGAATTTTTGAGAAAGTTCGGATTTTTTTAAAATTTCAAACCGAAATCAGTTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>352 197 158 121 65 33 29 23 22</canonical_bands>
                <polymorphic_bands>352 279 197 65 33 29 23 22</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>442 201 134 109 58 32 24</canonical_bands>
                <polymorphic_bands>643 134 109 58 32 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTGCAACATAAGTTTTCAT</pcr_primer_p1>
		<pcr_primer_p2>TGTAACTGATTTCGGTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>626</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTGCAACATAAGTTTTCATGAAAATCGGGGGTGGAGCGCGCCAACTTTAAAGGCGCATATCTCAAGAACGATAGAAGCTATCAAAATGTTGTCAACTCCAAAATCGCTCAGCATTAAATTCGACATATTTTTGTAGTTTTG</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTGCAACATAAGTTTTCATGAAAATCGGGGGTGGAGCGCGCCAACTTTAAAGGCGCATATCTCAAGAACGATAGAAGCTATCAAAATGTTGTCAACTCCAAAATCGCTCAGCATTAAATTYGACATATTTTTGTAGTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25087</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>452432</contig_pos>
        <strand></strand>
        <context>gtagttttgc[C/A]cttcctgcta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CAACTCCAAAATCGCTCAGCATTAAATTCGACATATTTTTGTAGTTTTGC</left_flank>
        <right_flank>CTTCCTGCTAGCTACCGAGGTTTTGAAGATATGCGCCTTTAAAGTTAACG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCTCTTATTTATCTCGCCATTATATCAAAACCCAATGATATATTCTAACTGTTTCTCAGGGACGTTTTACGTTTTACCTTACCTATCCGTCGTTTCTCTAGACCCTCTCGATTTCCCATACTATTTCCTTTTTCCTTTTTCGAAAATGTTGCACTTTTCGTATGCGAAAAAACCGTTAAACCGCCCATCTCGGGGGTAGAAGATGGCGAAGACCCGTGTAGATATTCTGTTATTGATGATTTATCTGATCGAAACGGTCGGAGGGAATGTTCTCGAAGACCGAAAAATAAAAAGAAAATACGGGCGGTCGTTTTTCCATTAGGAGACGATAACTGATGACGACAAGGCAAATTTTTGCAACATAAGTTTTCATGAAAATCGGGGGTGGAGCGCGCCAACTTTAAAGGCGCATATCTCAAGAACGATAGAAGCTATCAAAATGTTGTCAACTCCAAAATCGCTCAGCATTAAATTCGACATATTTTTGTAGTTTTGCCCTTCCTGCTAGCTACCGAGGTTTTGAAGATATGCGCCTTTAAAGTTAACGCGTGCAAATGTGGGATGGGTGAGACGCTGGCGCCGCGCAAAAGTTTAAAGGCGCGTATCTCAAGAACGATAAAAGCAATTAAATTTTTGTTAATTACGAAATTGCTCAGCATAAAATTTGGCATACTTTTATAATTTACCTCTTTTTGCTAGCTACCGTAGTTTTTGAGATATGCACCTTTAAAGCTAGCTCACCCTTGTCTACCGCTTCCTCTGTCACATGAAAGGGGGCGGCGGGTGGTTAACTTTAAAGACGCATATCTCTAAAACGACTGTAGCTAACAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATGCTGAGCAATTTTGTAGTTGACAGTTTTTAAATAGCTTTTTTATTTTTTTCGATATGAATTTTTGAGAAAGTTCGGATTTTTTTAAAATTTCAAACCGAAATCAGTTACAGATAAATTATGAAAACTCTAA</canonical>
            <polymorphic>AATTCTCTTATTTATCTCGCCATTATATCAAAACCCAATGATATATTCTAACTGTTTCTCAGGGACGTTTTACGTTTTACCTTACCTATCCGTCGTTTCTCTAGACCCTCTCGATTTCCCATACTATTTCCTTTTTCCTTTTTCGAAAATGTTGCACTTTTCGTATGCGAAAAAACCGTTAAACCGCCCATCTCGGGGGTAGAAGATGGCGAAGACCCGTGTAGATATTCTGTTATTGATGATTTATCTGATCGAAACGGTCGGAGGGAATGTTCTCGAAGACCGAAAAATAAAAAGAAAATACGGGCGGTCGTTTTTCCATTAGGAGACGATAACTGATGACGACAAGGCAAATTTTTGCAACATAAGTTTTCATGAAAATCGGGGGTGGAGCGCGCCAACTTTAAAGGCGCATATCTCAAGAACGATAGAAGCTATCAAAATGTTGTCAACTCCAAAATCGCTCAGCATTAAATTCGACATATTTTTGTAGTTTTGCMCTTCCTGCTAGCTACCGAGGTTTTGAAGATATGCGCCTTTAAAGTTAACGCGTGCAAATGTGGGATGGGTGAGACGCTGGCGCCGCGCAAAAGTTTAAAGGCGCGTATCTCAAGAACGATAAAAGCAATTAAATTTTTGTTAATTACGAAATTGCTCAGCATAAAATTTGGCATACTTTTATAATTTACCTCTTTTTGCTAGCTACCGTAGTTTTTGAGATATGCACCTTTAAAGCTAGCTCACCCTTGTCTACCGCTTCCTCTGTCACATGAAAGGGGGCGGCGGGTGGTTAACTTTAAAGACGCATATCTCTAAAACGACTGTAGCTAACAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATGCTGAGCAATTTTGTAGTTGACAGTTTTTAAATAGCTTTTTTATTTTTTTCGATATGAATTTTTGAGAAAGTTCGGATTTTTTTAAAATTTCAAACCGAAATCAGTTACAGATAAATTATGAAAACTCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTGCAACATAAGTTTTCAT</pcr_primer_p1>
		<pcr_primer_p2>TGTAACTGATTTCGGTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>626</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTGCAACATAAGTTTTCATGAAAATCGGGGGTGGAGCGCGCCAACTTTAAAGGCGCATATCTCAAGAACGATAGAAGCTATCAAAATGTTGTCAACTCCAAAATCGCTCAGCATTAAATTCGACATATTTTTGTAGTTTTGCCCTTCCTGCTAGCTACCGAGGTTTTGAAGATATGCGCCTTTAAAGTTAACGCGTGCAAATGTGGGATGGGTGAGACGCTGGCGCCGCGCAAAAGTTTAAAGGCGCGTATCTCAAGAACGATAAAAGCAATTAAATTTTTGTTAATTACGAAATTGCTCAGCATAAAATTTGGCATACTTTTATAATTTACCTCTTTTTGCTAGCTACCGTAGTTTTTGAGATATGCACCTTTAAAGCTAGCTCACCCTTGTCTACCGCTTCCTCTGTCACATGAAAGGGGGCGGCGGGTGGTTAACTTTAAAGACGCATATCTCTAAAACGACTGTAGCTAACAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATGCTGAGCAATTTTGTAGTTGACAGTTTTTAAATAGCTTTTTTATTTTTTTCGATATGAATTTTTGAGAAAGTTCGGATTTTTTTAAAATTTCAAACCGAAATCAGTTACA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTGCAACATAAGTTTTCATGAAAATCGGGGGTGGAGCGCGCCAACTTTAAAGGCGCATATCTCAAGAACGATAGAAGCTATCAAAATGTTGTCAACTCCAAAATCGCTCAGCATTAAATTCGACATATTTTTGTAGTTTTGCMCTTCCTGCTAGCTACCGAGGTTTTGAAGATATGCGCCTTTAAAGTTAACGCGTGCAAATGTGGGATGGGTGAGACGCTGGCGCCGCGCAAAAGTTTAAAGGCGCGTATCTCAAGAACGATAAAAGCAATTAAATTTTTGTTAATTACGAAATTGCTCAGCATAAAATTTGGCATACTTTTATAATTTACCTCTTTTTGCTAGCTACCGTAGTTTTTGAGATATGCACCTTTAAAGCTAGCTCACCCTTGTCTACCGCTTCCTCTGTCACATGAAAGGGGGCGGCGGGTGGTTAACTTTAAAGACGCATATCTCTAAAACGACTGTAGCTAACAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATGCTGAGCAATTTTGTAGTTGACAGTTTTTAAATAGCTTTTTTATTTTTTTCGATATGAATTTTTGAGAAAGTTCGGATTTTTTTAAAATTTCAAACCGAAATCAGTTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25088</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>452521</contig_pos>
        <strand></strand>
        <context>ggcgccgcgc[A/C]aaagtttaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTAAAGTTAACGCGTGCAAATGTGGGATGGGTGAGACGCTGGCGCCGCGC</left_flank>
        <right_flank>AAAGTTTAAAGGCGCGTATCTCAAGAACGATAAAAGCAATTAAATTTTTG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGTCGTTTCTCTAGACCCTCTCGATTTCCCATACTATTTCCTTTTTCCTTTTTCGAAAATGTTGCACTTTTCGTATGCGAAAAAACCGTTAAACCGCCCATCTCGGGGGTAGAAGATGGCGAAGACCCGTGTAGATATTCTGTTATTGATGATTTATCTGATCGAAACGGTCGGAGGGAATGTTCTCGAAGACCGAAAAATAAAAAGAAAATACGGGCGGTCGTTTTTCCATTAGGAGACGATAACTGATGACGACAAGGCAAATTTTTGCAACATAAGTTTTCATGAAAATCGGGGGTGGAGCGCGCCAACTTTAAAGGCGCATATCTCAAGAACGATAGAAGCTATCAAAATGTTGTCAACTCCAAAATCGCTCAGCATTAAATTCGACATATTTTTGTAGTTTTGCCCTTCCTGCTAGCTACCGAGGTTTTGAAGATATGCGCCTTTAAAGTTAACGCGTGCAAATGTGGGATGGGTGAGACGCTGGCGCCGCGCAAAAGTTTAAAGGCGCGTATCTCAAGAACGATAAAAGCAATTAAATTTTTGTTAATTACGAAATTGCTCAGCATAAAATTTGGCATACTTTTATAATTTACCTCTTTTTGCTAGCTACCGTAGTTTTTGAGATATGCACCTTTAAAGCTAGCTCACCCTTGTCTACCGCTTCCTCTGTCACATGAAAGGGGGCGGCGGGTGGTTAACTTTAAAGACGCATATCTCTAAAACGACTGTAGCTAACAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATGCTGAGCAATTTTGTAGTTGACAGTTTTTAAATAGCTTTTTTATTTTTTTCGATATGAATTTTTGAGAAAGTTCGGATTTTTTTAAAATTTCAAACCGAAATCAGTTACAGATAAATTATGAAAACTCTAACATTCAAGAACTTTTTTTTTTGAAAATTAGGCAACAATAATAAAAATTATTTGAACAATTTATTTAGCACCAGAAACAAAAAAAAAACG</canonical>
            <polymorphic>CCGTCGTTTCTCTAGACCCTCTCGATTTCCCATACTATTTCCTTTTTCCTTTTTCGAAAATGTTGCACTTTTCGTATGCGAAAAAACCGTTAAACCGCCCATCTCGGGGGTAGAAGATGGCGAAGACCCGTGTAGATATTCTGTTATTGATGATTTATCTGATCGAAACGGTCGGAGGGAATGTTCTCGAAGACCGAAAAATAAAAAGAAAATACGGGCGGTCGTTTTTCCATTAGGAGACGATAACTGATGACGACAAGGCAAATTTTTGCAACATAAGTTTTCATGAAAATCGGGGGTGGAGCGCGCCAACTTTAAAGGCGCATATCTCAAGAACGATAGAAGCTATCAAAATGTTGTCAACTCCAAAATCGCTCAGCATTAAATTCGACATATTTTTGTAGTTTTGCCCTTCCTGCTAGCTACCGAGGTTTTGAAGATATGCGCCTTTAAAGTTAACGCGTGCAAATGTGGGATGGGTGAGACGCTGGCGCCGCGCMAAAGTTTAAAGGCGCGTATCTCAAGAACGATAAAAGCAATTAAATTTTTGTTAATTACGAAATTGCTCAGCATAAAATTTGGCATACTTTTATAATTTACCTCTTTTTGCTAGCTACCGTAGTTTTTGAGATATGCACCTTTAAAGCTAGCTCACCCTTGTCTACCGCTTCCTCTGTCACATGAAAGGGGGCGGCGGGTGGTTAACTTTAAAGACGCATATCTCTAAAACGACTGTAGCTAACAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATGCTGAGCAATTTTGTAGTTGACAGTTTTTAAATAGCTTTTTTATTTTTTTCGATATGAATTTTTGAGAAAGTTCGGATTTTTTTAAAATTTCAAACCGAAATCAGTTACAGATAAATTATGAAAACTCTAACATTCAAGAACTTTTTTTTTTGAAAATTAGGCAACAATAATAAAAATTATTTGAACAATTTATTTAGCACCAGAAACAAAAAAAAAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTGCAACATAAGTTTTCAT</pcr_primer_p1>
		<pcr_primer_p2>TGTAACTGATTTCGGTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>626</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTGCAACATAAGTTTTCATGAAAATCGGGGGTGGAGCGCGCCAACTTTAAAGGCGCATATCTCAAGAACGATAGAAGCTATCAAAATGTTGTCAACTCCAAAATCGCTCAGCATTAAATTCGACATATTTTTGTAGTTTTGCCCTTCCTGCTAGCTACCGAGGTTTTGAAGATATGCGCCTTTAAAGTTAACGCGTGCAAATGTGGGATGGGTGAGACGCTGGCGCCGCGCAAAAGTTTAAAGGCGCGTATCTCAAGAACGATAAAAGCAATTAAATTTTTGTTAATTACGAAATTGCTCAGCATAAAATTTGGCATACTTTTATAATTTACCTCTTTTTGCTAGCTACCGTAGTTTTTGAGATATGCACCTTTAAAGCTAGCTCACCCTTGTCTACCGCTTCCTCTGTCACATGAAAGGGGGCGGCGGGTGGTTAACTTTAAAGACGCATATCTCTAAAACGACTGTAGCTAACAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATGCTGAGCAATTTTGTAGTTGACAGTTTTTAAATAGCTTTTTTATTTTTTTCGATATGAATTTTTGAGAAAGTTCGGATTTTTTTAAAATTTCAAACCGAAATCAGTTACA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTGCAACATAAGTTTTCATGAAAATCGGGGGTGGAGCGCGCCAACTTTAAAGGCGCATATCTCAAGAACGATAGAAGCTATCAAAATGTTGTCAACTCCAAAATCGCTCAGCATTAAATTCGACATATTTTTGTAGTTTTGCCCTTCCTGCTAGCTACCGAGGTTTTGAAGATATGCGCCTTTAAAGTTAACGCGTGCAAATGTGGGATGGGTGAGACGCTGGCGCCGCGCMAAAGTTTAAAGGCGCGTATCTCAAGAACGATAAAAGCAATTAAATTTTTGTTAATTACGAAATTGCTCAGCATAAAATTTGGCATACTTTTATAATTTACCTCTTTTTGCTAGCTACCGTAGTTTTTGAGATATGCACCTTTAAAGCTAGCTCACCCTTGTCTACCGCTTCCTCTGTCACATGAAAGGGGGCGGCGGGTGGTTAACTTTAAAGACGCATATCTCTAAAACGACTGTAGCTAACAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATGCTGAGCAATTTTGTAGTTGACAGTTTTTAAATAGCTTTTTTATTTTTTTCGATATGAATTTTTGAGAAAGTTCGGATTTTTTTAAAATTTCAAACCGAAATCAGTTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25089</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>452613</contig_pos>
        <strand></strand>
        <context>gcatactttt[A/G]taatttacct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTTTTGTTAATTACGAAATTGCTCAGCATAAAATTTGGCATACTTTT</left_flank>
        <right_flank>TAATTTACCTCTTTTTGCTAGCTACCGTAGTTTTTGAGATATGCACCTTT</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCGCCCATCTCGGGGGTAGAAGATGGCGAAGACCCGTGTAGATATTCTGTTATTGATGATTTATCTGATCGAAACGGTCGGAGGGAATGTTCTCGAAGACCGAAAAATAAAAAGAAAATACGGGCGGTCGTTTTTCCATTAGGAGACGATAACTGATGACGACAAGGCAAATTTTTGCAACATAAGTTTTCATGAAAATCGGGGGTGGAGCGCGCCAACTTTAAAGGCGCATATCTCAAGAACGATAGAAGCTATCAAAATGTTGTCAACTCCAAAATCGCTCAGCATTAAATTCGACATATTTTTGTAGTTTTGCCCTTCCTGCTAGCTACCGAGGTTTTGAAGATATGCGCCTTTAAAGTTAACGCGTGCAAATGTGGGATGGGTGAGACGCTGGCGCCGCGCAAAAGTTTAAAGGCGCGTATCTCAAGAACGATAAAAGCAATTAAATTTTTGTTAATTACGAAATTGCTCAGCATAAAATTTGGCATACTTTTATAATTTACCTCTTTTTGCTAGCTACCGTAGTTTTTGAGATATGCACCTTTAAAGCTAGCTCACCCTTGTCTACCGCTTCCTCTGTCACATGAAAGGGGGCGGCGGGTGGTTAACTTTAAAGACGCATATCTCTAAAACGACTGTAGCTAACAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATGCTGAGCAATTTTGTAGTTGACAGTTTTTAAATAGCTTTTTTATTTTTTTCGATATGAATTTTTGAGAAAGTTCGGATTTTTTTAAAATTTCAAACCGAAATCAGTTACAGATAAATTATGAAAACTCTAACATTCAAGAACTTTTTTTTTTGAAAATTAGGCAACAATAATAAAAATTATTTGAACAATTTATTTAGCACCAGAAACAAAAAAAAAACGCAAAGAAAGGCAAGAAAATCATATGGAGAACAGAATTTTTGGAATTTTAGAAAAATTAAGGCATAGAAAGCTCAAAAAGACCTGAGATTTTG</canonical>
            <polymorphic>AACCGCCCATCTCGGGGGTAGAAGATGGCGAAGACCCGTGTAGATATTCTGTTATTGATGATTTATCTGATCGAAACGGTCGGAGGGAATGTTCTCGAAGACCGAAAAATAAAAAGAAAATACGGGCGGTCGTTTTTCCATTAGGAGACGATAACTGATGACGACAAGGCAAATTTTTGCAACATAAGTTTTCATGAAAATCGGGGGTGGAGCGCGCCAACTTTAAAGGCGCATATCTCAAGAACGATAGAAGCTATCAAAATGTTGTCAACTCCAAAATCGCTCAGCATTAAATTCGACATATTTTTGTAGTTTTGCCCTTCCTGCTAGCTACCGAGGTTTTGAAGATATGCGCCTTTAAAGTTAACGCGTGCAAATGTGGGATGGGTGAGACGCTGGCGCCGCGCAAAAGTTTAAAGGCGCGTATCTCAAGAACGATAAAAGCAATTAAATTTTTGTTAATTACGAAATTGCTCAGCATAAAATTTGGCATACTTTTRTAATTTACCTCTTTTTGCTAGCTACCGTAGTTTTTGAGATATGCACCTTTAAAGCTAGCTCACCCTTGTCTACCGCTTCCTCTGTCACATGAAAGGGGGCGGCGGGTGGTTAACTTTAAAGACGCATATCTCTAAAACGACTGTAGCTAACAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATGCTGAGCAATTTTGTAGTTGACAGTTTTTAAATAGCTTTTTTATTTTTTTCGATATGAATTTTTGAGAAAGTTCGGATTTTTTTAAAATTTCAAACCGAAATCAGTTACAGATAAATTATGAAAACTCTAACATTCAAGAACTTTTTTTTTTGAAAATTAGGCAACAATAATAAAAATTATTTGAACAATTTATTTAGCACCAGAAACAAAAAAAAAACGCAAAGAAAGGCAAGAAAATCATATGGAGAACAGAATTTTTGGAATTTTAGAAAAATTAAGGCATAGAAAGCTCAAAAAGACCTGAGATTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTGCAACATAAGTTTTCAT</pcr_primer_p1>
		<pcr_primer_p2>TGTAACTGATTTCGGTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>626</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTGCAACATAAGTTTTCATGAAAATCGGGGGTGGAGCGCGCCAACTTTAAAGGCGCATATCTCAAGAACGATAGAAGCTATCAAAATGTTGTCAACTCCAAAATCGCTCAGCATTAAATTCGACATATTTTTGTAGTTTTGCCCTTCCTGCTAGCTACCGAGGTTTTGAAGATATGCGCCTTTAAAGTTAACGCGTGCAAATGTGGGATGGGTGAGACGCTGGCGCCGCGCAAAAGTTTAAAGGCGCGTATCTCAAGAACGATAAAAGCAATTAAATTTTTGTTAATTACGAAATTGCTCAGCATAAAATTTGGCATACTTTTATAATTTACCTCTTTTTGCTAGCTACCGTAGTTTTTGAGATATGCACCTTTAAAGCTAGCTCACCCTTGTCTACCGCTTCCTCTGTCACATGAAAGGGGGCGGCGGGTGGTTAACTTTAAAGACGCATATCTCTAAAACGACTGTAGCTAACAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATGCTGAGCAATTTTGTAGTTGACAGTTTTTAAATAGCTTTTTTATTTTTTTCGATATGAATTTTTGAGAAAGTTCGGATTTTTTTAAAATTTCAAACCGAAATCAGTTACA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTGCAACATAAGTTTTCATGAAAATCGGGGGTGGAGCGCGCCAACTTTAAAGGCGCATATCTCAAGAACGATAGAAGCTATCAAAATGTTGTCAACTCCAAAATCGCTCAGCATTAAATTCGACATATTTTTGTAGTTTTGCCCTTCCTGCTAGCTACCGAGGTTTTGAAGATATGCGCCTTTAAAGTTAACGCGTGCAAATGTGGGATGGGTGAGACGCTGGCGCCGCGCAAAAGTTTAAAGGCGCGTATCTCAAGAACGATAAAAGCAATTAAATTTTTGTTAATTACGAAATTGCTCAGCATAAAATTTGGCATACTTTTRTAATTTACCTCTTTTTGCTAGCTACCGTAGTTTTTGAGATATGCACCTTTAAAGCTAGCTCACCCTTGTCTACCGCTTCCTCTGTCACATGAAAGGGGGCGGCGGGTGGTTAACTTTAAAGACGCATATCTCTAAAACGACTGTAGCTAACAAAAAGTTGTAAACTACAAAAATGTGTAAAATTTTATGCTGAGCAATTTTGTAGTTGACAGTTTTTAAATAGCTTTTTTATTTTTTTCGATATGAATTTTTGAGAAAGTTCGGATTTTTTTAAAATTTCAAACCGAAATCAGTTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25090</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>467500</contig_pos>
        <strand>+</strand>
        <context>TTCGTTTTCC[A/C]GGGGTTTCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTTCTCCCCAAATTTTTAATTGAATTCTGAATATCTAATTTCGTTTTCC</left_flank>
        <right_flank>GGGGTTTCTATGGTGATTTTTCAGACATTTTCAGCTGATTTTCAGCTTGA</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATAAACATGACATACTTTCCGAAATTTTGATTTTTGACAACTCACCCCACCTTCCACAGAATTTCAATTTTTGGACCCCTTGTGCGCCTTTAAAATCAAAAAACCAAAGTTGAGCAAACCTAGTCATGTTTATACTTATTTTGTAGCTCTTATACTTATTTTGTACTCAATCCTGGCAAATTTAACTATAACTAAGAAACTTCGGAAGAAAAAAAATCTTTCCTAAAAAATCCTATGTTTCATTTTCAGTCAAAGTGCGGGGGAGTGTAAGTGACGAAAGGCTAGACGGAAATTATATATTTTCTCATGACACCTTTTTTTGTCAGAGTGCACTTTTAGCCGGAATTCAAGGTCTTTTTTTTGATGACCTTCTAGAAGTTTCTGAGAGTACTGAAAAATTGATTTTCAGAGAATTTTTTCTAGAAATTTCTAGAAAACTTTTTCAGAAAGTTCTCCCCAAATTTTTAATTGAATTCTGAATATCTAATTTCGTTTTCCCGGGGTTTCTATGGTGATTTTTCAGACATTTTCAGCTGATTTTCAGCTTGAAAATTTTCGAAATTTTGAGAAAAAAGACCTACTAGCATTTGTGGCGACTACTGTAGTTTGAAAAGTTCGCTCCTTCTCGAAATCAAACATTTTTTGAATACAAACTGTTCCAGACATGGAATCCACGGAGAGGTGCTGAAAATAGTTTTTTTGATATTGAAAAAAAAAAATTTTTCTAGAAATTTTTTAAAATTTAGAAATAGTAGAATCTCTAAAAATCAAGATTCCCCAGTGATTTTGTAGACTTTTCTGGAATTAATGAAATCTGAAATTTCAGACATTTTTTACAATTAAAAAAAAATTCCAAAGAATCTGAAAATCTGAAAATTCAGACATGAAAAAAATTTTTTTTGAATTTTAAAATGAAAAAAAAAATTCCAAAAAATTAAAAAATCTGAAATTTCATACATTATTTAAAATTTAAAAAAAAATTCCAAAAAATCTGAAAAT</canonical>
            <polymorphic>TATAAACATGACATACTTTCCGAAATTTTGATTTTTGACAACTCACCCCACCTTCCACAGAATTTCAATTTTTGGACCCCTTGTGCGCCTTTAAAATCAAAAAACCAAAGTTGAGCAAACCTAGTCATGTTTATACTTATTTTGTAGCTCTTATACTTATTTTGTACTCAATCCTGGCAAATTTAACTATAACTAAGAAACTTCGGAAGAAAAAAAATCTTTCCTAAAAAATCCTATGTTTCATTTTCAGTCAAAGTGCGGGGGAGTGTAAGTGACGAAAGGCTAGACGGAAATTATATATTTTCTCATGACACCTTTTTTTGTCAGAGTGCACTTTTAGCCGGAATTCAAGGTCTTTTTTTTGATGACCTTCTAGAAGTTTCTGAGAGTACTGAAAAATTGATTTTCAGAGAATTTTTTCTAGAAATTTCTAGAAAACTTTTTCAGAAAGTTCTCCCCAAATTTTTAATTGAATTCTGAATATCTAATTTCGTTTTCCMGGGGTTTCTATGGTGATTTTTCAGACATTTTCAGCTGATTTTCAGCTTGAAAATTTTCGAAATTTTGAGAAAAAAGACCTACTAGCATTTGTGGCGACTACTGTAGTTTGAAAAGTTCGCTCCTTCTCGAAATCAAACATTTTTTGAATACAAACTGTTCCAGACATGGAATCCACGGAGAGGTGCTGAAAATAGTTTTTTTGATATTGAAAAAAAAAAATTTTTCTAGAAATTTTTTAAAATTTAGAAATAGTAGAATCTCTAAAAATCAAGATTCCCCAGTGATTTTGTAGACTTTTCTGGAATTAATGAAATCTGAAATTTCAGACATTTTTTACAATTAAAAAAAAATTCCAAAGAATCTGAAAATCTGAAAATTCAGACATGAAAAAAATTTTTTTTGAATTTTAAAATGAAAAAAAAAATTCCAAAAAATTAAAAAATCTGAAATTTCATACATTATTTAAAATTTAAAAAAAAATTCCAAAAAATCTGAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>498 327 174 1</canonical_bands>
                <polymorphic_bands>498 327 175</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 341 158</canonical_bands>
                <polymorphic_bands>659 341</polymorphic_bands>
            </assay>
            <assay>
                <site>CCCGGG</site>
                <isoschizomers>
                    <enzyme>Cfr9I</enzyme>
                    <enzyme>PspAI</enzyme>
                    <enzyme>SmaI</enzyme>
                    <enzyme>XmaCI</enzyme>
                    <enzyme>XmaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTCTCCCCAAATTTTTAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAACTATTTTCAGCACCTCTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAGTTCTCCCCAAATTTTTAATTGAATTCTGAATATCTAATTTCGTTTTCCCGGGGTTTCTATGGTGATTTTTCAGACATTTTCAGCTGATTTTCAGCTTGAAAATTTTCGAAATTTTGAGAAAAAAGACCTACTAGCATTTGTGGCGACTACTGTAGTTTGAAAAGTTCGCTCCTTCTCGAAATCAAACATTTTTTGAATACAAACTGTTCCAGACATGGAATCCACGGAGAGGTGCTGAAAATAGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAGTTCTCCCCAAATTTTTAATTGAATTCTGAATATCTAATTTCGTTTTCCMGGGGTTTCTATGGTGATTTTTCAGACATTTTCAGCTGATTTTCAGCTTGAAAATTTTCGAAATTTTGAGAAAAAAGACCTACTAGCATTTGTGGCGACTACTGTAGTTTGAAAAGTTCGCTCCTTCTCGAAATCAAACATTTTTTGAATACAAACTGTTCCAGACATGGAATCCACGGAGAGGTGCTGAAAATAGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25091</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>467555</contig_pos>
        <strand>+</strand>
        <context>GCTTGAAAAT[G/T]TTCGAAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCTATGGTGATTTTTCAGACATTTTCAGCTGATTTTCAGCTTGAAAAT</left_flank>
        <right_flank>TTCGAAATTTTGAGAAAAAAGACCTACTAGCATTTGTGGCGACTACTGTA</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACAGAATTTCAATTTTTGGACCCCTTGTGCGCCTTTAAAATCAAAAAACCAAAGTTGAGCAAACCTAGTCATGTTTATACTTATTTTGTAGCTCTTATACTTATTTTGTACTCAATCCTGGCAAATTTAACTATAACTAAGAAACTTCGGAAGAAAAAAAATCTTTCCTAAAAAATCCTATGTTTCATTTTCAGTCAAAGTGCGGGGGAGTGTAAGTGACGAAAGGCTAGACGGAAATTATATATTTTCTCATGACACCTTTTTTTGTCAGAGTGCACTTTTAGCCGGAATTCAAGGTCTTTTTTTTGATGACCTTCTAGAAGTTTCTGAGAGTACTGAAAAATTGATTTTCAGAGAATTTTTTCTAGAAATTTCTAGAAAACTTTTTCAGAAAGTTCTCCCCAAATTTTTAATTGAATTCTGAATATCTAATTTCGTTTTCCCGGGGTTTCTATGGTGATTTTTCAGACATTTTCAGCTGATTTTCAGCTTGAAAATTTTCGAAATTTTGAGAAAAAAGACCTACTAGCATTTGTGGCGACTACTGTAGTTTGAAAAGTTCGCTCCTTCTCGAAATCAAACATTTTTTGAATACAAACTGTTCCAGACATGGAATCCACGGAGAGGTGCTGAAAATAGTTTTTTTGATATTGAAAAAAAAAAATTTTTCTAGAAATTTTTTAAAATTTAGAAATAGTAGAATCTCTAAAAATCAAGATTCCCCAGTGATTTTGTAGACTTTTCTGGAATTAATGAAATCTGAAATTTCAGACATTTTTTACAATTAAAAAAAAATTCCAAAGAATCTGAAAATCTGAAAATTCAGACATGAAAAAAATTTTTTTTGAATTTTAAAATGAAAAAAAAAATTCCAAAAAATTAAAAAATCTGAAATTTCATACATTATTTAAAATTTAAAAAAAAATTCCAAAAAATCTGAAAATTCAGAAAAAAGTCAAAAAATTGTTTTTTTCAAAATTTACGTAGTTTGTAGTCTCC</canonical>
            <polymorphic>CACAGAATTTCAATTTTTGGACCCCTTGTGCGCCTTTAAAATCAAAAAACCAAAGTTGAGCAAACCTAGTCATGTTTATACTTATTTTGTAGCTCTTATACTTATTTTGTACTCAATCCTGGCAAATTTAACTATAACTAAGAAACTTCGGAAGAAAAAAAATCTTTCCTAAAAAATCCTATGTTTCATTTTCAGTCAAAGTGCGGGGGAGTGTAAGTGACGAAAGGCTAGACGGAAATTATATATTTTCTCATGACACCTTTTTTTGTCAGAGTGCACTTTTAGCCGGAATTCAAGGTCTTTTTTTTGATGACCTTCTAGAAGTTTCTGAGAGTACTGAAAAATTGATTTTCAGAGAATTTTTTCTAGAAATTTCTAGAAAACTTTTTCAGAAAGTTCTCCCCAAATTTTTAATTGAATTCTGAATATCTAATTTCGTTTTCCCGGGGTTTCTATGGTGATTTTTCAGACATTTTCAGCTGATTTTCAGCTTGAAAATKTTCGAAATTTTGAGAAAAAAGACCTACTAGCATTTGTGGCGACTACTGTAGTTTGAAAAGTTCGCTCCTTCTCGAAATCAAACATTTTTTGAATACAAACTGTTCCAGACATGGAATCCACGGAGAGGTGCTGAAAATAGTTTTTTTGATATTGAAAAAAAAAAATTTTTCTAGAAATTTTTTAAAATTTAGAAATAGTAGAATCTCTAAAAATCAAGATTCCCCAGTGATTTTGTAGACTTTTCTGGAATTAATGAAATCTGAAATTTCAGACATTTTTTACAATTAAAAAAAAATTCCAAAGAATCTGAAAATCTGAAAATTCAGACATGAAAAAAATTTTTTTTGAATTTTAAAATGAAAAAAAAAATTCCAAAAAATTAAAAAATCTGAAATTTCATACATTATTTAAAATTTAAAAAAAAATTCCAAAAAATCTGAAAATTCAGAAAAAAGTCAAAAAATTGTTTTTTTCAAAATTTACGTAGTTTGTAGTCTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>165 158 119 79 79 68 35 35 30 26 25 23 20 19 18 17 13 12 12 12 11 10 9 5</canonical_bands>
                <polymorphic_bands>165 158 119 88 79 68 35 35 30 26 25 23 20 19 18 17 13 12 12 12 11 10 5</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>158 113 112 65 63 53 53 35 26 23 20 20 19 19 18 17 16 15 15 15 14 13 12 12 11 11 10 10 9 7 6 5 5</canonical_bands>
                <polymorphic_bands>158 113 112 74 63 53 53 35 26 23 20 20 19 19 18 17 16 15 15 15 14 13 12 12 11 11 10 10 7 6 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAATTTTTAATTGAATTCTGA</pcr_primer_p1>
		<pcr_primer_p2>AAAAACTATTTTCAGCACCTCTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CCAAATTTTTAATTGAATTCTGAATATCTAATTTCGTTTTCCCGGGGTTTCTATGGTGATTTTTCAGACATTTTCAGCTGATTTTCAGCTTGAAAATTTTCGAAATTTTGAGAAAAAAGACCTACTAGCATTTGTGGCGACTACTGTAGTTTGAAAAGTTCGCTCCTTCTCGAAATCAAACATTTTTTGAATACAAACTGTTCCAGACATGGAATCCACGGAGAGGTGCTGAAAATAGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CCAAATTTTTAATTGAATTCTGAATATCTAATTTCGTTTTCCCGGGGTTTCTATGGTGATTTTTCAGACATTTTCAGCTGATTTTCAGCTTGAAAATKTTCGAAATTTTGAGAAAAAAGACCTACTAGCATTTGTGGCGACTACTGTAGTTTGAAAAGTTCGCTCCTTCTCGAAATCAAACATTTTTTGAATACAAACTGTTCCAGACATGGAATCCACGGAGAGGTGCTGAAAATAGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25092</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>467576</contig_pos>
        <strand>+</strand>
        <context>TGAGAAAAAA[A/G]ACCTACTAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTTTCAGCTGATTTTCAGCTTGAAAATTTTCGAAATTTTGAGAAAAAA</left_flank>
        <right_flank>ACCTACTAGCATTTGTGGCGACTACTGTAGTTTGAAAAGTTCGCTCCTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCCTTGTGCGCCTTTAAAATCAAAAAACCAAAGTTGAGCAAACCTAGTCATGTTTATACTTATTTTGTAGCTCTTATACTTATTTTGTACTCAATCCTGGCAAATTTAACTATAACTAAGAAACTTCGGAAGAAAAAAAATCTTTCCTAAAAAATCCTATGTTTCATTTTCAGTCAAAGTGCGGGGGAGTGTAAGTGACGAAAGGCTAGACGGAAATTATATATTTTCTCATGACACCTTTTTTTGTCAGAGTGCACTTTTAGCCGGAATTCAAGGTCTTTTTTTTGATGACCTTCTAGAAGTTTCTGAGAGTACTGAAAAATTGATTTTCAGAGAATTTTTTCTAGAAATTTCTAGAAAACTTTTTCAGAAAGTTCTCCCCAAATTTTTAATTGAATTCTGAATATCTAATTTCGTTTTCCCGGGGTTTCTATGGTGATTTTTCAGACATTTTCAGCTGATTTTCAGCTTGAAAATTTTCGAAATTTTGAGAAAAAAGACCTACTAGCATTTGTGGCGACTACTGTAGTTTGAAAAGTTCGCTCCTTCTCGAAATCAAACATTTTTTGAATACAAACTGTTCCAGACATGGAATCCACGGAGAGGTGCTGAAAATAGTTTTTTTGATATTGAAAAAAAAAAATTTTTCTAGAAATTTTTTAAAATTTAGAAATAGTAGAATCTCTAAAAATCAAGATTCCCCAGTGATTTTGTAGACTTTTCTGGAATTAATGAAATCTGAAATTTCAGACATTTTTTACAATTAAAAAAAAATTCCAAAGAATCTGAAAATCTGAAAATTCAGACATGAAAAAAATTTTTTTTGAATTTTAAAATGAAAAAAAAAATTCCAAAAAATTAAAAAATCTGAAATTTCATACATTATTTAAAATTTAAAAAAAAATTCCAAAAAATCTGAAAATTCAGAAAAAAGTCAAAAAATTGTTTTTTTCAAAATTTACGTAGTTTGTAGTCTCCTTCACCTATCTGATCTTTTTT</canonical>
            <polymorphic>CCCCTTGTGCGCCTTTAAAATCAAAAAACCAAAGTTGAGCAAACCTAGTCATGTTTATACTTATTTTGTAGCTCTTATACTTATTTTGTACTCAATCCTGGCAAATTTAACTATAACTAAGAAACTTCGGAAGAAAAAAAATCTTTCCTAAAAAATCCTATGTTTCATTTTCAGTCAAAGTGCGGGGGAGTGTAAGTGACGAAAGGCTAGACGGAAATTATATATTTTCTCATGACACCTTTTTTTGTCAGAGTGCACTTTTAGCCGGAATTCAAGGTCTTTTTTTTGATGACCTTCTAGAAGTTTCTGAGAGTACTGAAAAATTGATTTTCAGAGAATTTTTTCTAGAAATTTCTAGAAAACTTTTTCAGAAAGTTCTCCCCAAATTTTTAATTGAATTCTGAATATCTAATTTCGTTTTCCCGGGGTTTCTATGGTGATTTTTCAGACATTTTCAGCTGATTTTCAGCTTGAAAATTTTCGAAATTTTGAGAAAAAARACCTACTAGCATTTGTGGCGACTACTGTAGTTTGAAAAGTTCGCTCCTTCTCGAAATCAAACATTTTTTGAATACAAACTGTTCCAGACATGGAATCCACGGAGAGGTGCTGAAAATAGTTTTTTTGATATTGAAAAAAAAAAATTTTTCTAGAAATTTTTTAAAATTTAGAAATAGTAGAATCTCTAAAAATCAAGATTCCCCAGTGATTTTGTAGACTTTTCTGGAATTAATGAAATCTGAAATTTCAGACATTTTTTACAATTAAAAAAAAATTCCAAAGAATCTGAAAATCTGAAAATTCAGACATGAAAAAAATTTTTTTTGAATTTTAAAATGAAAAAAAAAATTCCAAAAAATTAAAAAATCTGAAATTTCATACATTATTTAAAATTTAAAAAAAAATTCCAAAAAATCTGAAAATTCAGAAAAAAGTCAAAAAATTGTTTTTTTCAAAATTTACGTAGTTTGTAGTCTCCTTCACCTATCTGATCTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAATTTTTAATTGAATTCTGA</pcr_primer_p1>
		<pcr_primer_p2>AAAAACTATTTTCAGCACCTCTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CCAAATTTTTAATTGAATTCTGAATATCTAATTTCGTTTTCCCGGGGTTTCTATGGTGATTTTTCAGACATTTTCAGCTGATTTTCAGCTTGAAAATTTTCGAAATTTTGAGAAAAAAGACCTACTAGCATTTGTGGCGACTACTGTAGTTTGAAAAGTTCGCTCCTTCTCGAAATCAAACATTTTTTGAATACAAACTGTTCCAGACATGGAATCCACGGAGAGGTGCTGAAAATAGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CCAAATTTTTAATTGAATTCTGAATATCTAATTTCGTTTTCCCGGGGTTTCTATGGTGATTTTTCAGACATTTTCAGCTGATTTTCAGCTTGAAAATTTTCGAAATTTTGAGAAAAAARACCTACTAGCATTTGTGGCGACTACTGTAGTTTGAAAAGTTCGCTCCTTCTCGAAATCAAACATTTTTTGAATACAAACTGTTCCAGACATGGAATCCACGGAGAGGTGCTGAAAATAGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25093</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>490860</contig_pos>
        <strand></strand>
        <context>AAGTCTTTTT[T/C]CMAWTTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATTTGAAAATCTAGTTCAAAAATGTCCTAAATATCATGGAAGTCTTTTT</left_flank>
        <right_flank>CCAATTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACCAAATTTGGAGAAGAAGAATACATTTTTCTTATCCATATTTTTTTCTCACTTGATCTACTAGTTTTTCTTCTAATTTCGACCTTTTCTGTCACTTTTTTTTTCTTCTTCTTCTTCTTTTTCTATATTCAGAGAAGGAAAAAGAAGAAGAAGAAGACCTTGATGAACATCATTCCAATAAGAGAAATTGATGAATGAATCATTGAAAATCAAAAGAATACCGCAAAATTTATGGTTTTCATAATTTGGAGAAGTGGAAGGAAAAGAAGAAGAAGGATTCAGAATCCCCGTTCAAAAAATCTGGTTCTGACGTTTTTAATATTCCTAGATTAGGCACAATTTTCTTATTTCCATAGCGTCAAAACAAACCAAAAAAATAATTTTCTTCTCCAGATTTGGTCTTCTCCAAATCTGGTCTTCTCCAGATTTTGGATGGACCAATTCCAAAATTTGAAAATCTAGTTCAAAAATGTCCTAAATATCATGGAAGTCTTTTTTCCAATTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTCCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTAGTTCAAAAATGTCCTAAATATCTTGGAAGTTTTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAGGTCTTCCCCAGATTCTGGATGAACAAATTCAAAATCAACATTTCTCAAAATTTCAAAGTTCTGAAATTTTCCAAAGAGATATGCGCCTTTAAACTTGACTAATCCCCTTGTATTTGCTTTCCAATGTGTCTGTAGGCCAAAAAAGGGGACTTTCTCAAGTTCCCATGACCAAAAAGGGGAACAAATAGAATGAAATGAACACTAAATTTCCGCCCGACCTAGTTTAACGGGTTCATCTTATATCACATTCTCTCATACACATCAAAAGAAATGTGCCGAAACCTAAAAAAGAGGTTTCCCACCCTAAAATAGCCTATTTTAGGTTAAAA</canonical>
            <polymorphic>AGACCAAATTTGGAGAAGAAGAATACATTTTTCTTATCCATATTTTTTTCTCACTTGATCTACTAGTTTTTCTTCTAATTTCGACCTTTTCTGTCACTTTTTTTTTCTTCTTCTTCTTCTTTTTCTATATTCAGAGAAGGAAAAAGAAGAAGAAGAAGACCTTGATGAACATCATTCCAATAAGAGAAATTGATGAATGAATCATTGAAAATCAAAAGAATACCGCAAAATTTATGGTTTTCATAATTTGGAGAAGTGGAAGGAAAAGAAGAAGAAGGATTCAGAATCCCCGTTCAAAAAATCTGGTTCTGACGTTTTTAATATTCCTAGATTAGGCACAATTTTCTTATTTCCATAGCGTCAAAACAAACCAAAAAAATAATTTTCTTCTCCAGATTTGGTCTTCTCCAAATCTGGTCTTCTCCAGATTTTGGATGGACCAATTCCAAAATTTGAAAATCTAGTTCAAAAATGTCCTAAATATCATGGAAGTCTTTTTYCCAATTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTCCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTAGTTCAAAAATGTCCTAAATATCTTGGAAGTTTTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAGGTCTTCCCCAGATTCTGGATGAACAAATTCAAAATCAACATTTCTCAAAATTTCAAAGTTCTGAAATTTTCCAAAGAGATATGCGCCTTTAAACTTGACTAATCCCCTTGTATTTGCTTTCCAATGTGTCTGTAGGCCAAAAAAGGGGACTTTCTCAAGTTCCCATGACCAAAAAGGGGAACAAATAGAATGAAATGAACACTAAATTTCCGCCCGACCTAGTTTAACGGGTTCATCTTATATCACATTCTCTCATACACATCAAAAGAAATGTGCCGAAACCTAAAAAAGAGGTTTCCCACCCTAAAATAGCCTATTTTAGGTTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAAATTTGAAAATCTAGTTCA</pcr_primer_p1>
		<pcr_primer_p2>GAAGACCTAATTTGGAGAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>CCAAAATTTGAAAATCTAGTTCAAAAATGTCCTAAATATCATGGAAGTCTTTTTTCCAATTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTCCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTAGTTCAAAAATGTCCTAAATATCTTGGAAGTTTTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAGGTCTTC</canonical_amplicon>
		<polymorphic_amplicon>CCAAAATTTGAAAATCTAGTTCAAAAATGTCCTAAATATCATGGAAGTCTTTTTYCCAATTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTCCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTAGTTCAAAAATGTCCTAAATATCTTGGAAGTTTTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAGGTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25094</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>490862</contig_pos>
        <strand></strand>
        <context>GTCTTTTTYC[C/A]AWTTTTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTGAAAATCTAGTTCAAAAATGTCCTAAATATCATGGAAGTCTTTTTTC</left_flank>
        <right_flank>AATTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTCC</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAAATTTGGAGAAGAAGAATACATTTTTCTTATCCATATTTTTTTCTCACTTGATCTACTAGTTTTTCTTCTAATTTCGACCTTTTCTGTCACTTTTTTTTTCTTCTTCTTCTTCTTTTTCTATATTCAGAGAAGGAAAAAGAAGAAGAAGAAGACCTTGATGAACATCATTCCAATAAGAGAAATTGATGAATGAATCATTGAAAATCAAAAGAATACCGCAAAATTTATGGTTTTCATAATTTGGAGAAGTGGAAGGAAAAGAAGAAGAAGGATTCAGAATCCCCGTTCAAAAAATCTGGTTCTGACGTTTTTAATATTCCTAGATTAGGCACAATTTTCTTATTTCCATAGCGTCAAAACAAACCAAAAAAATAATTTTCTTCTCCAGATTTGGTCTTCTCCAAATCTGGTCTTCTCCAGATTTTGGATGGACCAATTCCAAAATTTGAAAATCTAGTTCAAAAATGTCCTAAATATCATGGAAGTCTTTTTTCCAATTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTCCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTAGTTCAAAAATGTCCTAAATATCTTGGAAGTTTTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAGGTCTTCCCCAGATTCTGGATGAACAAATTCAAAATCAACATTTCTCAAAATTTCAAAGTTCTGAAATTTTCCAAAGAGATATGCGCCTTTAAACTTGACTAATCCCCTTGTATTTGCTTTCCAATGTGTCTGTAGGCCAAAAAAGGGGACTTTCTCAAGTTCCCATGACCAAAAAGGGGAACAAATAGAATGAAATGAACACTAAATTTCCGCCCGACCTAGTTTAACGGGTTCATCTTATATCACATTCTCTCATACACATCAAAAGAAATGTGCCGAAACCTAAAAAAGAGGTTTCCCACCCTAAAATAGCCTATTTTAGGTTAAAAAT</canonical>
            <polymorphic>ACCAAATTTGGAGAAGAAGAATACATTTTTCTTATCCATATTTTTTTCTCACTTGATCTACTAGTTTTTCTTCTAATTTCGACCTTTTCTGTCACTTTTTTTTTCTTCTTCTTCTTCTTTTTCTATATTCAGAGAAGGAAAAAGAAGAAGAAGAAGACCTTGATGAACATCATTCCAATAAGAGAAATTGATGAATGAATCATTGAAAATCAAAAGAATACCGCAAAATTTATGGTTTTCATAATTTGGAGAAGTGGAAGGAAAAGAAGAAGAAGGATTCAGAATCCCCGTTCAAAAAATCTGGTTCTGACGTTTTTAATATTCCTAGATTAGGCACAATTTTCTTATTTCCATAGCGTCAAAACAAACCAAAAAAATAATTTTCTTCTCCAGATTTGGTCTTCTCCAAATCTGGTCTTCTCCAGATTTTGGATGGACCAATTCCAAAATTTGAAAATCTAGTTCAAAAATGTCCTAAATATCATGGAAGTCTTTTTTCMAATTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTCCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTAGTTCAAAAATGTCCTAAATATCTTGGAAGTTTTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAGGTCTTCCCCAGATTCTGGATGAACAAATTCAAAATCAACATTTCTCAAAATTTCAAAGTTCTGAAATTTTCCAAAGAGATATGCGCCTTTAAACTTGACTAATCCCCTTGTATTTGCTTTCCAATGTGTCTGTAGGCCAAAAAAGGGGACTTTCTCAAGTTCCCATGACCAAAAAGGGGAACAAATAGAATGAAATGAACACTAAATTTCCGCCCGACCTAGTTTAACGGGTTCATCTTATATCACATTCTCTCATACACATCAAAAGAAATGTGCCGAAACCTAAAAAAGAGGTTTCCCACCCTAAAATAGCCTATTTTAGGTTAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAAATTTGAAAATCTAGTTCA</pcr_primer_p1>
		<pcr_primer_p2>GAAGACCTAATTTGGAGAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>CCAAAATTTGAAAATCTAGTTCAAAAATGTCCTAAATATCATGGAAGTCTTTTTTCCAATTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTCCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTAGTTCAAAAATGTCCTAAATATCTTGGAAGTTTTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAGGTCTTC</canonical_amplicon>
		<polymorphic_amplicon>CCAAAATTTGAAAATCTAGTTCAAAAATGTCCTAAATATCATGGAAGTCTTTTTTCMAATTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTCCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTAGTTCAAAAATGTCCTAAATATCTTGGAAGTTTTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAGGTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25095</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>490864</contig_pos>
        <strand></strand>
        <context>CTTTTTYCMA[A/T]TTTTTTTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAAAATCTAGTTCAAAAATGTCCTAAATATCATGGAAGTCTTTTTTCCA</left_flank>
        <right_flank>TTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTCCAG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAATTTGGAGAAGAAGAATACATTTTTCTTATCCATATTTTTTTCTCACTTGATCTACTAGTTTTTCTTCTAATTTCGACCTTTTCTGTCACTTTTTTTTTCTTCTTCTTCTTCTTTTTCTATATTCAGAGAAGGAAAAAGAAGAAGAAGAAGACCTTGATGAACATCATTCCAATAAGAGAAATTGATGAATGAATCATTGAAAATCAAAAGAATACCGCAAAATTTATGGTTTTCATAATTTGGAGAAGTGGAAGGAAAAGAAGAAGAAGGATTCAGAATCCCCGTTCAAAAAATCTGGTTCTGACGTTTTTAATATTCCTAGATTAGGCACAATTTTCTTATTTCCATAGCGTCAAAACAAACCAAAAAAATAATTTTCTTCTCCAGATTTGGTCTTCTCCAAATCTGGTCTTCTCCAGATTTTGGATGGACCAATTCCAAAATTTGAAAATCTAGTTCAAAAATGTCCTAAATATCATGGAAGTCTTTTTTCCAATTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTCCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTAGTTCAAAAATGTCCTAAATATCTTGGAAGTTTTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAGGTCTTCCCCAGATTCTGGATGAACAAATTCAAAATCAACATTTCTCAAAATTTCAAAGTTCTGAAATTTTCCAAAGAGATATGCGCCTTTAAACTTGACTAATCCCCTTGTATTTGCTTTCCAATGTGTCTGTAGGCCAAAAAAGGGGACTTTCTCAAGTTCCCATGACCAAAAAGGGGAACAAATAGAATGAAATGAACACTAAATTTCCGCCCGACCTAGTTTAACGGGTTCATCTTATATCACATTCTCTCATACACATCAAAAGAAATGTGCCGAAACCTAAAAAAGAGGTTTCCCACCCTAAAATAGCCTATTTTAGGTTAAAAATGG</canonical>
            <polymorphic>CAAATTTGGAGAAGAAGAATACATTTTTCTTATCCATATTTTTTTCTCACTTGATCTACTAGTTTTTCTTCTAATTTCGACCTTTTCTGTCACTTTTTTTTTCTTCTTCTTCTTCTTTTTCTATATTCAGAGAAGGAAAAAGAAGAAGAAGAAGACCTTGATGAACATCATTCCAATAAGAGAAATTGATGAATGAATCATTGAAAATCAAAAGAATACCGCAAAATTTATGGTTTTCATAATTTGGAGAAGTGGAAGGAAAAGAAGAAGAAGGATTCAGAATCCCCGTTCAAAAAATCTGGTTCTGACGTTTTTAATATTCCTAGATTAGGCACAATTTTCTTATTTCCATAGCGTCAAAACAAACCAAAAAAATAATTTTCTTCTCCAGATTTGGTCTTCTCCAAATCTGGTCTTCTCCAGATTTTGGATGGACCAATTCCAAAATTTGAAAATCTAGTTCAAAAATGTCCTAAATATCATGGAAGTCTTTTTTCCAWTTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTCCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTAGTTCAAAAATGTCCTAAATATCTTGGAAGTTTTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAGGTCTTCCCCAGATTCTGGATGAACAAATTCAAAATCAACATTTCTCAAAATTTCAAAGTTCTGAAATTTTCCAAAGAGATATGCGCCTTTAAACTTGACTAATCCCCTTGTATTTGCTTTCCAATGTGTCTGTAGGCCAAAAAAGGGGACTTTCTCAAGTTCCCATGACCAAAAAGGGGAACAAATAGAATGAAATGAACACTAAATTTCCGCCCGACCTAGTTTAACGGGTTCATCTTATATCACATTCTCTCATACACATCAAAAGAAATGTGCCGAAACCTAAAAAAGAGGTTTCCCACCCTAAAATAGCCTATTTTAGGTTAAAAATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>148 140 129 111 95 70 61 53 41 41 31 23 16 16 15 8 2</canonical_bands>
                <polymorphic_bands>148 140 129 111 95 70 68 61 41 41 31 23 16 16 8 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAAATTTGAAAATCTAGTTCA</pcr_primer_p1>
		<pcr_primer_p2>GAAGACCTAATTTGGAGAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>CCAAAATTTGAAAATCTAGTTCAAAAATGTCCTAAATATCATGGAAGTCTTTTTTCCAATTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTCCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTAGTTCAAAAATGTCCTAAATATCTTGGAAGTTTTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAGGTCTTC</canonical_amplicon>
		<polymorphic_amplicon>CCAAAATTTGAAAATCTAGTTCAAAAATGTCCTAAATATCATGGAAGTCTTTTTTCCAWTTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTCCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTAGTTCAAAAATGTCCTAAATATCTTGGAAGTTTTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAGGTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25096</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>490951</contig_pos>
        <strand>+</strand>
        <context>CCTAAATCTA[A/G]TTCAAAAATG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCGCCTTCTCCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTA</left_flank>
        <right_flank>TTCAAAAATGTCCTAAATATCTTGGAAGTTTTTTACCAATATTTTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTCACTTTTTTTTTCTTCTTCTTCTTCTTTTTCTATATTCAGAGAAGGAAAAAGAAGAAGAAGAAGACCTTGATGAACATCATTCCAATAAGAGAAATTGATGAATGAATCATTGAAAATCAAAAGAATACCGCAAAATTTATGGTTTTCATAATTTGGAGAAGTGGAAGGAAAAGAAGAAGAAGGATTCAGAATCCCCGTTCAAAAAATCTGGTTCTGACGTTTTTAATATTCCTAGATTAGGCACAATTTTCTTATTTCCATAGCGTCAAAACAAACCAAAAAAATAATTTTCTTCTCCAGATTTGGTCTTCTCCAAATCTGGTCTTCTCCAGATTTTGGATGGACCAATTCCAAAATTTGAAAATCTAGTTCAAAAATGTCCTAAATATCATGGAAGTCTTTTTTCCAATTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTCCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTAGTTCAAAAATGTCCTAAATATCTTGGAAGTTTTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAGGTCTTCCCCAGATTCTGGATGAACAAATTCAAAATCAACATTTCTCAAAATTTCAAAGTTCTGAAATTTTCCAAAGAGATATGCGCCTTTAAACTTGACTAATCCCCTTGTATTTGCTTTCCAATGTGTCTGTAGGCCAAAAAAGGGGACTTTCTCAAGTTCCCATGACCAAAAAGGGGAACAAATAGAATGAAATGAACACTAAATTTCCGCCCGACCTAGTTTAACGGGTTCATCTTATATCACATTCTCTCATACACATCAAAAGAAATGTGCCGAAACCTAAAAAAGAGGTTTCCCACCCTAAAATAGCCTATTTTAGGTTAAAAATGGGACATTTTAAGCCCAGAAAAAGCCCTAAACTATAAAAAGAGCACTTGAAAATTGTATATTTCCCCTCTTTTCCAAAATTTCAACACT</canonical>
            <polymorphic>TGTCACTTTTTTTTTCTTCTTCTTCTTCTTTTTCTATATTCAGAGAAGGAAAAAGAAGAAGAAGAAGACCTTGATGAACATCATTCCAATAAGAGAAATTGATGAATGAATCATTGAAAATCAAAAGAATACCGCAAAATTTATGGTTTTCATAATTTGGAGAAGTGGAAGGAAAAGAAGAAGAAGGATTCAGAATCCCCGTTCAAAAAATCTGGTTCTGACGTTTTTAATATTCCTAGATTAGGCACAATTTTCTTATTTCCATAGCGTCAAAACAAACCAAAAAAATAATTTTCTTCTCCAGATTTGGTCTTCTCCAAATCTGGTCTTCTCCAGATTTTGGATGGACCAATTCCAAAATTTGAAAATCTAGTTCAAAAATGTCCTAAATATCATGGAAGTCTTTTTTCCAATTTTTTTTCAAAAAATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTCCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTARTTCAAAAATGTCCTAAATATCTTGGAAGTTTTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAGGTCTTCCCCAGATTCTGGATGAACAAATTCAAAATCAACATTTCTCAAAATTTCAAAGTTCTGAAATTTTCCAAAGAGATATGCGCCTTTAAACTTGACTAATCCCCTTGTATTTGCTTTCCAATGTGTCTGTAGGCCAAAAAAGGGGACTTTCTCAAGTTCCCATGACCAAAAAGGGGAACAAATAGAATGAAATGAACACTAAATTTCCGCCCGACCTAGTTTAACGGGTTCATCTTATATCACATTCTCTCATACACATCAAAAGAAATGTGCCGAAACCTAAAAAAGAGGTTTCCCACCCTAAAATAGCCTATTTTAGGTTAAAAATGGGACATTTTAAGCCCAGAAAAAGCCCTAAACTATAAAAAGAGCACTTGAAAATTGTATATTTCCCCTCTTTTCCAAAATTTCAACACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>302 236 201 134 127</canonical_bands>
                <polymorphic_bands>429 236 201 134</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCTTCTTCTTCTCCAGGT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTAAAGGCGCATATCTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTCCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTAGTTCAAAAATGTCCTAAATATCTTGGAAGTTTTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAGGTCTTCCCCAGATTCTGGATGAACAAATTCAAAATCAACATTTCTCAAAATTTCAAAGTTCTGAAATTTTCCAAAGAGATATGCGCCTTTAAACTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCTTCTTCTTCTCCAGGTTCCGCCTTCTCCAGATTCTGGATGGACCATTTTCAAAAATCCTAAATCTARTTCAAAAATGTCCTAAATATCTTGGAAGTTTTTTACCAATATTTTTTTTTGCAAAAATCTCTTCTTCTTCTCCAAATTAGGTCTTCCCCAGATTCTGGATGAACAAATTCAAAATCAACATTTCTCAAAATTTCAAAGTTCTGAAATTTTCCAAAGAGATATGCGCCTTTAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25097</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>492987</contig_pos>
        <strand></strand>
        <context>actacaaaaa[A/T]atgtaaaatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCATAACTCAAAAACTACTGTAGCTAGAAACACTTCGTAAACTACAAAAA</left_flank>
        <right_flank>ATGTAAAATTTTATGATCTACATTTTTCTAGTTTTTTTTTTTCTGATAAC</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAATTTTGGAAAAAAGTACCCCTCCCTCCCCCCCACTCCCATTGGTTTGGCAAAATTTAAAGTTCAAACTTTTGACAATCCATATCTTCCTTAATTTTTGGATTAGATTTATGATTATTATACCAAAATAAGGGATAAGATACGCTTAACAGTTGTACAATTGACAAATTTTAAAGCCTTTAAAGTCGGCCCAACTGGCGCCGCCTACCGCCCCCCCCCCCCCGCCGTTGGGGGTCGGCTAACTTTAAAGGCGCACATCTCCTAAACTACTGTAGTTATACAAAAATTGTTAATTGCAAAATTGTGTGAAATTTTATTTTGAGCAATATTTCAATTGACAATTTTTAACTGTTTTTTTTAGTTTTTGGGTTATGCGCTTTTAAAGAAAGGGCGCCCCTCCCCTCGTCCTCTCCCTCGCTGTTAGAGCGCGCGTTAACTTTAAAGACGCATAACTCAAAAACTACTGTAGCTAGAAACACTTCGTAAACTACAAAAAAATGTAAAATTTTATGATCTACATTTTTCTAGTTTTTTTTTTTCTGATAACTACAGTAGTTCTTGAGATATGCGCCTTTAGAGTACCATAGACCTCAGAGCATTCCAAAAAGCGTTACATTTTCAATTGTTTTTCGGCACACACTTGTCCTTGTACCATTGGTTGTCGGTTAAATGAGGATTACGGTCTTCTTCCCTTTTTCTTCTTATTGAAAAGAAGAAAAAGAAGACGGCACAACACTTGACCGTCAAGACACAAAACAGTAGGAGAGGGGACTGTCTGCTTGCGGCAAATCTTGGCTGGGAAGAGGCACCTGTCACATGGACCCCTAGGAAATGATGGATTAGAAACATTTCTTCTAAGAATTCCGACATGAATAAATAGGATTTATGGGGTGCAGAGAGTTTCAAGTAGATTGGGTTTCCACCTCAATTTAAGACCTAAATATGTTTGACCTCTGGGGGGTACATTTTTTGATAGGAACTTTCACTTCTTTTTGAA</canonical>
            <polymorphic>TTGAAATTTTGGAAAAAAGTACCCCTCCCTCCCCCCCACTCCCATTGGTTTGGCAAAATTTAAAGTTCAAACTTTTGACAATCCATATCTTCCTTAATTTTTGGATTAGATTTATGATTATTATACCAAAATAAGGGATAAGATACGCTTAACAGTTGTACAATTGACAAATTTTAAAGCCTTTAAAGTCGGCCCAACTGGCGCCGCCTACCGCCCCCCCCCCCCCGCCGTTGGGGGTCGGCTAACTTTAAAGGCGCACATCTCCTAAACTACTGTAGTTATACAAAAATTGTTAATTGCAAAATTGTGTGAAATTTTATTTTGAGCAATATTTCAATTGACAATTTTTAACTGTTTTTTTTAGTTTTTGGGTTATGCGCTTTTAAAGAAAGGGCGCCCCTCCCCTCGTCCTCTCCCTCGCTGTTAGAGCGCGCGTTAACTTTAAAGACGCATAACTCAAAAACTACTGTAGCTAGAAACACTTCGTAAACTACAAAAAWATGTAAAATTTTATGATCTACATTTTTCTAGTTTTTTTTTTTCTGATAACTACAGTAGTTCTTGAGATATGCGCCTTTAGAGTACCATAGACCTCAGAGCATTCCAAAAAGCGTTACATTTTCAATTGTTTTTCGGCACACACTTGTCCTTGTACCATTGGTTGTCGGTTAAATGAGGATTACGGTCTTCTTCCCTTTTTCTTCTTATTGAAAAGAAGAAAAAGAAGACGGCACAACACTTGACCGTCAAGACACAAAACAGTAGGAGAGGGGACTGTCTGCTTGCGGCAAATCTTGGCTGGGAAGAGGCACCTGTCACATGGACCCCTAGGAAATGATGGATTAGAAACATTTCTTCTAAGAATTCCGACATGAATAAATAGGATTTATGGGGTGCAGAGAGTTTCAAGTAGATTGGGTTTCCACCTCAATTTAAGACCTAAATATGTTTGACCTCTGGGGGGTACATTTTTTGATAGGAACTTTCACTTCTTTTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATAAGATACGCTTAACAGTTG</pcr_primer_p1>
		<pcr_primer_p2>GAATGCTCTGAGGTCTATGGT</pcr_primer_p2>
		<pcr_amplicon_size>469</pcr_amplicon_size>
		<canonical_amplicon>GGATAAGATACGCTTAACAGTTGTACAATTGACAAATTTTAAAGCCTTTAAAGTCGGCCCAACTGGCGCCGCCTACCGCCCCCCCCCCCCCGCCGTTGGGGGTCGGCTAACTTTAAAGGCGCACATCTCCTAAACTACTGTAGTTATACAAAAATTGTTAATTGCAAAATTGTGTGAAATTTTATTTTGAGCAATATTTCAATTGACAATTTTTAACTGTTTTTTTTAGTTTTTGGGTTATGCGCTTTTAAAGAAAGGGCGCCCCTCCCCTCGTCCTCTCCCTCGCTGTTAGAGCGCGCGTTAACTTTAAAGACGCATAACTCAAAAACTACTGTAGCTAGAAACACTTCGTAAACTACAAAAAAATGTAAAATTTTATGATCTACATTTTTCTAGTTTTTTTTTTTCTGATAACTACAGTAGTTCTTGAGATATGCGCCTTTAGAGTACCATAGACCTCAGAGCATTC</canonical_amplicon>
		<polymorphic_amplicon>GGATAAGATACGCTTAACAGTTGTACAATTGACAAATTTTAAAGCCTTTAAAGTCGGCCCAACTGGCGCCGCCTACCGCCCCCCCCCCCCCGCCGTTGGGGGTCGGCTAACTTTAAAGGCGCACATCTCCTAAACTACTGTAGTTATACAAAAATTGTTAATTGCAAAATTGTGTGAAATTTTATTTTGAGCAATATTTCAATTGACAATTTTTAACTGTTTTTTTTAGTTTTTGGGTTATGCGCTTTTAAAGAAAGGGCGCCCCTCCCCTCGTCCTCTCCCTCGCTGTTAGAGCGCGCGTTAACTTTAAAGACGCATAACTCAAAAACTACTGTAGCTAGAAACACTTCGTAAACTACAAAAAWATGTAAAATTTTATGATCTACATTTTTCTAGTTTTTTTTTTTCTGATAACTACAGTAGTTCTTGAGATATGCGCCTTTAGAGTACCATAGACCTCAGAGCATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25098</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>493156</contig_pos>
        <strand>+</strand>
        <context>TGGTTGTCGG[C/T]TAAATGAGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCAATTGTTTTTCGGCACACACTTGTCCTTGTACCATTGGTTGTCGG</left_flank>
        <right_flank>TAAATGAGGATTACGGTCTTCTTCCCTTTTTCTTCTTATTGAAAAGAAGA</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTAAAGCCTTTAAAGTCGGCCCAACTGGCGCCGCCTACCGCCCCCCCCCCCCCGCCGTTGGGGGTCGGCTAACTTTAAAGGCGCACATCTCCTAAACTACTGTAGTTATACAAAAATTGTTAATTGCAAAATTGTGTGAAATTTTATTTTGAGCAATATTTCAATTGACAATTTTTAACTGTTTTTTTTAGTTTTTGGGTTATGCGCTTTTAAAGAAAGGGCGCCCCTCCCCTCGTCCTCTCCCTCGCTGTTAGAGCGCGCGTTAACTTTAAAGACGCATAACTCAAAAACTACTGTAGCTAGAAACACTTCGTAAACTACAAAAAAATGTAAAATTTTATGATCTACATTTTTCTAGTTTTTTTTTTTCTGATAACTACAGTAGTTCTTGAGATATGCGCCTTTAGAGTACCATAGACCTCAGAGCATTCCAAAAAGCGTTACATTTTCAATTGTTTTTCGGCACACACTTGTCCTTGTACCATTGGTTGTCGGTTAAATGAGGATTACGGTCTTCTTCCCTTTTTCTTCTTATTGAAAAGAAGAAAAAGAAGACGGCACAACACTTGACCGTCAAGACACAAAACAGTAGGAGAGGGGACTGTCTGCTTGCGGCAAATCTTGGCTGGGAAGAGGCACCTGTCACATGGACCCCTAGGAAATGATGGATTAGAAACATTTCTTCTAAGAATTCCGACATGAATAAATAGGATTTATGGGGTGCAGAGAGTTTCAAGTAGATTGGGTTTCCACCTCAATTTAAGACCTAAATATGTTTGACCTCTGGGGGGTACATTTTTTGATAGGAACTTTCACTTCTTTTTGAATTTATACGGAAGTTACGTTTTCCAAACTGGATTTTAACAAAGCATAAATTAAAAAATCGAGTTCAGGACCCTTTAAAACCCTGAAAACCAATTAAAAACCGTGAAAGTTCCAATTTTTCGGAAATATGCAAATGTGGCCTAGTGGGATTTTTGACAACCAAACTTGGAA</canonical>
            <polymorphic>AATTTTAAAGCCTTTAAAGTCGGCCCAACTGGCGCCGCCTACCGCCCCCCCCCCCCCGCCGTTGGGGGTCGGCTAACTTTAAAGGCGCACATCTCCTAAACTACTGTAGTTATACAAAAATTGTTAATTGCAAAATTGTGTGAAATTTTATTTTGAGCAATATTTCAATTGACAATTTTTAACTGTTTTTTTTAGTTTTTGGGTTATGCGCTTTTAAAGAAAGGGCGCCCCTCCCCTCGTCCTCTCCCTCGCTGTTAGAGCGCGCGTTAACTTTAAAGACGCATAACTCAAAAACTACTGTAGCTAGAAACACTTCGTAAACTACAAAAAAATGTAAAATTTTATGATCTACATTTTTCTAGTTTTTTTTTTTCTGATAACTACAGTAGTTCTTGAGATATGCGCCTTTAGAGTACCATAGACCTCAGAGCATTCCAAAAAGCGTTACATTTTCAATTGTTTTTCGGCACACACTTGTCCTTGTACCATTGGTTGTCGGYTAAATGAGGATTACGGTCTTCTTCCCTTTTTCTTCTTATTGAAAAGAAGAAAAAGAAGACGGCACAACACTTGACCGTCAAGACACAAAACAGTAGGAGAGGGGACTGTCTGCTTGCGGCAAATCTTGGCTGGGAAGAGGCACCTGTCACATGGACCCCTAGGAAATGATGGATTAGAAACATTTCTTCTAAGAATTCCGACATGAATAAATAGGATTTATGGGGTGCAGAGAGTTTCAAGTAGATTGGGTTTCCACCTCAATTTAAGACCTAAATATGTTTGACCTCTGGGGGGTACATTTTTTGATAGGAACTTTCACTTCTTTTTGAATTTATACGGAAGTTACGTTTTCCAAACTGGATTTTAACAAAGCATAAATTAAAAAATCGAGTTCAGGACCCTTTAAAACCCTGAAAACCAATTAAAAACCGTGAAAGTTCCAATTTTTCGGAAATATGCAAATGTGGCCTAGTGGGATTTTTGACAACCAAACTTGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>264 227 101 77 65 55 53 45 35 24 19 15 9 6 5</canonical_bands>
                <polymorphic_bands>491 101 77 65 55 53 45 35 24 19 15 9 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTTACATTTTCAATTGTTTTTC</pcr_primer_p1>
		<pcr_primer_p2>AAGAAATGTTTCTAATCCATCATT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CGTTACATTTTCAATTGTTTTTCGGCACACACTTGTCCTTGTACCATTGGTTGTCGGTTAAATGAGGATTACGGTCTTCTTCCCTTTTTCTTCTTATTGAAAAGAAGAAAAAGAAGACGGCACAACACTTGACCGTCAAGACACAAAACAGTAGGAGAGGGGACTGTCTGCTTGCGGCAAATCTTGGCTGGGAAGAGGCACCTGTCACATGGACCCCTAGGAAATGATGGATTAGAAACATTTCTT</canonical_amplicon>
		<polymorphic_amplicon>CGTTACATTTTCAATTGTTTTTCGGCACACACTTGTCCTTGTACCATTGGTTGTCGGYTAAATGAGGATTACGGTCTTCTTCCCTTTTTCTTCTTATTGAAAAGAAGAAAAAGAAGACGGCACAACACTTGACCGTCAAGACACAAAACAGTAGGAGAGGGGACTGTCTGCTTGCGGCAAATCTTGGCTGGGAAGAGGCACCTGTCACATGGACCCCTAGGAAATGATGGATTAGAAACATTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25099</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>493345</contig_pos>
        <strand>+</strand>
        <context>AACATTTCTT[C/T]TAAGAATTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCACCTGTCACATGGACCCCTAGGAAATGATGGATTAGAAACATTTCTT</left_flank>
        <right_flank>TAAGAATTCCGACATGAATAAATAGGATTTATGGGGTGCAGAGAGTTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTAGTTTTTGGGTTATGCGCTTTTAAAGAAAGGGCGCCCCTCCCCTCGTCCTCTCCCTCGCTGTTAGAGCGCGCGTTAACTTTAAAGACGCATAACTCAAAAACTACTGTAGCTAGAAACACTTCGTAAACTACAAAAAAATGTAAAATTTTATGATCTACATTTTTCTAGTTTTTTTTTTTCTGATAACTACAGTAGTTCTTGAGATATGCGCCTTTAGAGTACCATAGACCTCAGAGCATTCCAAAAAGCGTTACATTTTCAATTGTTTTTCGGCACACACTTGTCCTTGTACCATTGGTTGTCGGTTAAATGAGGATTACGGTCTTCTTCCCTTTTTCTTCTTATTGAAAAGAAGAAAAAGAAGACGGCACAACACTTGACCGTCAAGACACAAAACAGTAGGAGAGGGGACTGTCTGCTTGCGGCAAATCTTGGCTGGGAAGAGGCACCTGTCACATGGACCCCTAGGAAATGATGGATTAGAAACATTTCTTCTAAGAATTCCGACATGAATAAATAGGATTTATGGGGTGCAGAGAGTTTCAAGTAGATTGGGTTTCCACCTCAATTTAAGACCTAAATATGTTTGACCTCTGGGGGGTACATTTTTTGATAGGAACTTTCACTTCTTTTTGAATTTATACGGAAGTTACGTTTTCCAAACTGGATTTTAACAAAGCATAAATTAAAAAATCGAGTTCAGGACCCTTTAAAACCCTGAAAACCAATTAAAAACCGTGAAAGTTCCAATTTTTCGGAAATATGCAAATGTGGCCTAGTGGGATTTTTGACAACCAAACTTGGAAAATCACTACCCGGGTTCAATACCTCTTAGTGGAGAACTTTTTTTTCCGTTTTTTTGGAGCATTTTTAGGAGCATTTTAGGATGTTTTGGACATTATTTGCATGTTTTTAGGGCTCATATTTTGGAAAATTGACTTTTTGCCATTTTTTAGAATTTTTTTTTTAATTTTGAAGTTTCAAAATCAGAATTT</canonical>
            <polymorphic>TTTTAGTTTTTGGGTTATGCGCTTTTAAAGAAAGGGCGCCCCTCCCCTCGTCCTCTCCCTCGCTGTTAGAGCGCGCGTTAACTTTAAAGACGCATAACTCAAAAACTACTGTAGCTAGAAACACTTCGTAAACTACAAAAAAATGTAAAATTTTATGATCTACATTTTTCTAGTTTTTTTTTTTCTGATAACTACAGTAGTTCTTGAGATATGCGCCTTTAGAGTACCATAGACCTCAGAGCATTCCAAAAAGCGTTACATTTTCAATTGTTTTTCGGCACACACTTGTCCTTGTACCATTGGTTGTCGGTTAAATGAGGATTACGGTCTTCTTCCCTTTTTCTTCTTATTGAAAAGAAGAAAAAGAAGACGGCACAACACTTGACCGTCAAGACACAAAACAGTAGGAGAGGGGACTGTCTGCTTGCGGCAAATCTTGGCTGGGAAGAGGCACCTGTCACATGGACCCCTAGGAAATGATGGATTAGAAACATTTCTTYTAAGAATTCCGACATGAATAAATAGGATTTATGGGGTGCAGAGAGTTTCAAGTAGATTGGGTTTCCACCTCAATTTAAGACCTAAATATGTTTGACCTCTGGGGGGTACATTTTTTGATAGGAACTTTCACTTCTTTTTGAATTTATACGGAAGTTACGTTTTCCAAACTGGATTTTAACAAAGCATAAATTAAAAAATCGAGTTCAGGACCCTTTAAAACCCTGAAAACCAATTAAAAACCGTGAAAGTTCCAATTTTTCGGAAATATGCAAATGTGGCCTAGTGGGATTTTTGACAACCAAACTTGGAAAATCACTACCCGGGTTCAATACCTCTTAGTGGAGAACTTTTTTTTCCGTTTTTTTGGAGCATTTTTAGGAGCATTTTAGGATGTTTTGGACATTATTTGCATGTTTTTAGGGCTCATATTTTGGAAAATTGACTTTTTGCCATTTTTTAGAATTTTTTTTTTAATTTTGAAGTTTCAAAATCAGAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>336 265 235 164</canonical_bands>
                <polymorphic_bands>601 235 164</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACACAAAACAGTAGGAGAGG</pcr_primer_p1>
		<pcr_primer_p2>TCAAAAAGAAGTGAAAGTTCCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGACACAAAACAGTAGGAGAGGGGACTGTCTGCTTGCGGCAAATCTTGGCTGGGAAGAGGCACCTGTCACATGGACCCCTAGGAAATGATGGATTAGAAACATTTCTTCTAAGAATTCCGACATGAATAAATAGGATTTATGGGGTGCAGAGAGTTTCAAGTAGATTGGGTTTCCACCTCAATTTAAGACCTAAATATGTTTGACCTCTGGGGGGTACATTTTTTGATAGGAACTTTCACTTCTTTTTGA</canonical_amplicon>
		<polymorphic_amplicon>AGACACAAAACAGTAGGAGAGGGGACTGTCTGCTTGCGGCAAATCTTGGCTGGGAAGAGGCACCTGTCACATGGACCCCTAGGAAATGATGGATTAGAAACATTTCTTYTAAGAATTCCGACATGAATAAATAGGATTTATGGGGTGCAGAGAGTTTCAAGTAGATTGGGTTTCCACCTCAATTTAAGACCTAAATATGTTTGACCTCTGGGGGGTACATTTTTTGATAGGAACTTTCACTTCTTTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25100</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>519715</contig_pos>
        <strand>+</strand>
        <context>TCCCAAATTG[C/T]AAAAAAAAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCCCAATTTTTTCAAATTCAATTTTCCCCCTTTTTCTTGTCCCAAATTG</left_flank>
        <right_flank>AAAAAAAAGTATCCCAAGTGAGCAAAAACCCCTGTTTCCCGAGCTGCTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCTTATTTTTTGGAAATTTTGGGGGTATACATTTTTTAAATCGATTTTTTGAAATTTCAAAAAATTGAAAGTTTATAGCATTATATATTTTTACAATGCTCAGAAAATTTCCTTTGTTTTAATATTAAAATCAAAACTATTGGTTGCCTAAGCACCAAGTTATGAAACTTTGAAAAAATTTTTTCAAAAAAATCTTTTTTTTTTGAAAATTTTTGGGATGCATTTTTGGAATCGAGTTTTTGAACTTGCGAAAAATTATAAGTATTTAGAAAATTATATTTTCAAAAAGCTAAGAAAATTAACATTCTATTAACACTAAAACCAAAAAAATCGGTTGTCTAGGCACCGAGTTATGAAACCTTGAAAATTGAAAAAAATTTTATACCTGGATTCCACCTACACACAACCAAATCCCATCCAATTATCCACCCTCTTAACCTAACCTTCTCCCAATTTTTTCAAATTCAATTTTCCCCCTTTTTCTTGTCCCAAATTGAAAAAAAAAGTATCCCAAGTGAGCAAAAACCCCTGTTTCCCGAGCTGCTGGGGACCTTTTAAGATTGAATTTTGACATAGATCGACAAGAGAGTATGGAAAATTGAGAGACGCAGACAGATTAGGGTGTGACACTTTTTGTTTCGAAATTCGATTTTTTTTTTTGGGAATTTTTTTTTGAATTTTCTGCTGATTCCAAACGTCTTCTGAAGCTTCCAGAAGCTTTTAGAAAACTCAAAAATTTGAAAAAAGGAAGAAAAAGTTTATATACCCCCAGGGACCACTTATCATGAAGCTGTCAGCACCAGAATACAATGCCAAAACATTGGGATTTTGGAAAAAAAATTTTTTGAGCCTTAAAAGTTTTTCCAGGCGACGCACTTCTTCTCACCATGGACATCATCATTGCATCGTTCGATTCGATTTCGGAAGTTGATATGGTATCTAGAGATTGAGAGACGCAGAGATATTTTTACAAAAAAATATTCCAGGACTACACTCT</canonical>
            <polymorphic>AAATCTTATTTTTTGGAAATTTTGGGGGTATACATTTTTTAAATCGATTTTTTGAAATTTCAAAAAATTGAAAGTTTATAGCATTATATATTTTTACAATGCTCAGAAAATTTCCTTTGTTTTAATATTAAAATCAAAACTATTGGTTGCCTAAGCACCAAGTTATGAAACTTTGAAAAAATTTTTTCAAAAAAATCTTTTTTTTTTGAAAATTTTTGGGATGCATTTTTGGAATCGAGTTTTTGAACTTGCGAAAAATTATAAGTATTTAGAAAATTATATTTTCAAAAAGCTAAGAAAATTAACATTCTATTAACACTAAAACCAAAAAAATCGGTTGTCTAGGCACCGAGTTATGAAACCTTGAAAATTGAAAAAAATTTTATACCTGGATTCCACCTACACACAACCAAATCCCATCCAATTATCCACCCTCTTAACCTAACCTTCTCCCAATTTTTTCAAATTCAATTTTCCCCCTTTTTCTTGTCCCAAATTGYAAAAAAAAGTATCCCAAGTGAGCAAAAACCCCTGTTTCCCGAGCTGCTGGGGACCTTTTAAGATTGAATTTTGACATAGATCGACAAGAGAGTATGGAAAATTGAGAGACGCAGACAGATTAGGGTGTGACACTTTTTGTTTCGAAATTCGATTTTTTTTTTTGGGAATTTTTTTTTGAATTTTCTGCTGATTCCAAACGTCTTCTGAAGCTTCCAGAAGCTTTTAGAAAACTCAAAAATTTGAAAAAAGGAAGAAAAAGTTTATATACCCCCAGGGACCACTTATCATGAAGCTGTCAGCACCAGAATACAATGCCAAAACATTGGGATTTTGGAAAAAAAATTTTTTGAGCCTTAAAAGTTTTTCCAGGCGACGCACTTCTTCTCACCATGGACATCATCATTGCATCGTTCGATTCGATTTCGGAAGTTGATATGGTATCTAGAGATTGAGAGACGCAGAGATATTTTTACAAAAAAATATTCCAGGACTACACTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTTATGAAACCTTGAAAATTG</pcr_primer_p1>
		<pcr_primer_p2>TCCATACTCTCTTGTCGATCTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAGTTATGAAACCTTGAAAATTGAAAAAAATTTTATACCTGGATTCCACCTACACACAACCAAATCCCATCCAATTATCCACCCTCTTAACCTAACCTTCTCCCAATTTTTTCAAATTCAATTTTCCCCCTTTTTCTTGTCCCAAATTGAAAAAAAAAGTATCCCAAGTGAGCAAAAACCCCTGTTTCCCGAGCTGCTGGGGACCTTTTAAGATTGAATTTTGACATAGATCGACAAGAGAGTATGGA</canonical_amplicon>
		<polymorphic_amplicon>GAGTTATGAAACCTTGAAAATTGAAAAAAATTTTATACCTGGATTCCACCTACACACAACCAAATCCCATCCAATTATCCACCCTCTTAACCTAACCTTCTCCCAATTTTTTCAAATTCAATTTTCCCCCTTTTTCTTGTCCCAAATTGYAAAAAAAAGTATCCCAAGTGAGCAAAAACCCCTGTTTCCCGAGCTGCTGGGGACCTTTTAAGATTGAATTTTGACATAGATCGACAAGAGAGTATGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25101</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>582753</contig_pos>
        <strand>+</strand>
        <context>AAAGACTACG[A/G]AAAATTTGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATAACCTATGGAAAATCGCTAACCGATGGGGACGTCGTAAAAGACTACG</left_flank>
        <right_flank>AAAATTTGATGAGCAAGGGCAGCAAATTGATCTATCAACCAACGAACAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCTATTTTTCTTTCATTTTTTAGCGGTTTTCCGAAAAATGCATGAATGGCCCAGTGGGATTTTCAGCACAATCTGAAGACCCGGGTTCGGTTCCACTCGGTGGCAAACCTTTTTTATTTTTGTGTAGACCATTTTTAGACTATCATAGAACAATCTAGAGCTGGAATTTGGGAATTTTGAAAAATCTGCAATTTTTTGGAAAAATTTTTTTGTCTGAAATTTTCAGATTTTTCAAAAAATTCTAAAATTCCTGCTCTAGACTGTTATAGAATGGTCTAAAAATGGTCCAAACGAAGAGCAAAAAGGTTTGCCACCAGGTGGAATCGAACCTGGGTCGTCAGATTGTACTTAAAATCCCACTGAGCCATCTGAGCATTTTTTGGAAAAACGCTCAAAAATCATGAAAAATAACCCTTTTTGGTTCAAAATATTTGACATTTTCCAGACAATAACCTATGGAAAATCGCTAACCGATGGGGACGTCGTAAAAGACTACGTAAAATTTGATGAGCAAGGGCAGCAAATTGATCTATCAACCAACGAACAGGCCACAACTACAGTACAACCAAAAATCAACAATTTCGTGTTCACCACCACCCCAATGTCCCCGCGGATCATTCCCGAACCTGGAGCATTGAGCCTGATAGAATCTGATGAAGGAAACAATGAAGCTCTCTATATTACTGGCAAATGGTGGATTTGGGGAATCTATTTTGGATTCATCGCTGGAACACTCTTGACGTTGGGTATTGGTGGAGGACTGTTTTATGTGCTAAGACGCACTGTGTTTAGTGTTTGGTTAGTTTTAAAGTATAGGAAATTTTATGAGCTATATCTTTTGTAGTTTACAAAATTTGGATAGGTACTGTAGTTTTTGAGATATGCGCTTTTAAAGGTCGTGCGCGCTCTGTAGAAGAGGTGAGGAAGGCGCCATCTTTGAAGGTGCATTTCTCAAAAACCATGGAAGTTATCAAACTTTGGTAAACAACAAAAATGTA</canonical>
            <polymorphic>ATTCTATTTTTCTTTCATTTTTTAGCGGTTTTCCGAAAAATGCATGAATGGCCCAGTGGGATTTTCAGCACAATCTGAAGACCCGGGTTCGGTTCCACTCGGTGGCAAACCTTTTTTATTTTTGTGTAGACCATTTTTAGACTATCATAGAACAATCTAGAGCTGGAATTTGGGAATTTTGAAAAATCTGCAATTTTTTGGAAAAATTTTTTTGTCTGAAATTTTCAGATTTTTCAAAAAATTCTAAAATTCCTGCTCTAGACTGTTATAGAATGGTCTAAAAATGGTCCAAACGAAGAGCAAAAAGGTTTGCCACCAGGTGGAATCGAACCTGGGTCGTCAGATTGTACTTAAAATCCCACTGAGCCATCTGAGCATTTTTTGGAAAAACGCTCAAAAATCATGAAAAATAACCCTTTTTGGTTCAAAATATTTGACATTTTCCAGACAATAACCTATGGAAAATCGCTAACCGATGGGGACGTCGTAAAAGACTACGRAAAATTTGATGAGCAAGGGCAGCAAATTGATCTATCAACCAACGAACAGGCCACAACTACAGTACAACCAAAAATCAACAATTTCGTGTTCACCACCACCCCAATGTCCCCGCGGATCATTCCCGAACCTGGAGCATTGAGCCTGATAGAATCTGATGAAGGAAACAATGAAGCTCTCTATATTACTGGCAAATGGTGGATTTGGGGAATCTATTTTGGATTCATCGCTGGAACACTCTTGACGTTGGGTATTGGTGGAGGACTGTTTTATGTGCTAAGACGCACTGTGTTTAGTGTTTGGTTAGTTTTAAAGTATAGGAAATTTTATGAGCTATATCTTTTGTAGTTTACAAAATTTGGATAGGTACTGTAGTTTTTGAGATATGCGCTTTTAAAGGTCGTGCGCGCTCTGTAGAAGAGGTGAGGAAGGCGCCATCTTTGAAGGTGCATTTCTCAAAAACCATGGAAGTTATCAAACTTTGGTAAACAACAAAAATGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TACGTA</site>
                <isoschizomers>
                    <enzyme>BstSNI</enzyme>
                    <enzyme>Eco105I</enzyme>
                    <enzyme>SnaBI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>482 258 245 15</canonical_bands>
                <polymorphic_bands>482 260 258</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGGTTCAAAATATTTGACATT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTCCTTCATCAGATTCTATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTGGTTCAAAATATTTGACATTTTCCAGACAATAACCTATGGAAAATCGCTAACCGATGGGGACGTCGTAAAAGACTACGTAAAATTTGATGAGCAAGGGCAGCAAATTGATCTATCAACCAACGAACAGGCCACAACTACAGTACAACCAAAAATCAACAATTTCGTGTTCACCACCACCCCAATGTCCCCGCGGATCATTCCCGAACCTGGAGCATTGAGCCTGATAGAATCTGATGAAGGAAACA</canonical_amplicon>
		<polymorphic_amplicon>TTTGGTTCAAAATATTTGACATTTTCCAGACAATAACCTATGGAAAATCGCTAACCGATGGGGACGTCGTAAAAGACTACGRAAAATTTGATGAGCAAGGGCAGCAAATTGATCTATCAACCAACGAACAGGCCACAACTACAGTACAACCAAAAATCAACAATTTCGTGTTCACCACCACCCCAATGTCCCCGCGGATCATTCCCGAACCTGGAGCATTGAGCCTGATAGAATCTGATGAAGGAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25102</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>582789</contig_pos>
        <strand>+</strand>
        <context>ATTGATCTAT[C/T]AACCAACGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTAAAAGACTACGTAAAATTTGATGAGCAAGGGCAGCAAATTGATCTAT</left_flank>
        <right_flank>AACCAACGAACAGGCCACAACTACAGTACAACCAAAAATCAACAATTTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATGCATGAATGGCCCAGTGGGATTTTCAGCACAATCTGAAGACCCGGGTTCGGTTCCACTCGGTGGCAAACCTTTTTTATTTTTGTGTAGACCATTTTTAGACTATCATAGAACAATCTAGAGCTGGAATTTGGGAATTTTGAAAAATCTGCAATTTTTTGGAAAAATTTTTTTGTCTGAAATTTTCAGATTTTTCAAAAAATTCTAAAATTCCTGCTCTAGACTGTTATAGAATGGTCTAAAAATGGTCCAAACGAAGAGCAAAAAGGTTTGCCACCAGGTGGAATCGAACCTGGGTCGTCAGATTGTACTTAAAATCCCACTGAGCCATCTGAGCATTTTTTGGAAAAACGCTCAAAAATCATGAAAAATAACCCTTTTTGGTTCAAAATATTTGACATTTTCCAGACAATAACCTATGGAAAATCGCTAACCGATGGGGACGTCGTAAAAGACTACGTAAAATTTGATGAGCAAGGGCAGCAAATTGATCTATCAACCAACGAACAGGCCACAACTACAGTACAACCAAAAATCAACAATTTCGTGTTCACCACCACCCCAATGTCCCCGCGGATCATTCCCGAACCTGGAGCATTGAGCCTGATAGAATCTGATGAAGGAAACAATGAAGCTCTCTATATTACTGGCAAATGGTGGATTTGGGGAATCTATTTTGGATTCATCGCTGGAACACTCTTGACGTTGGGTATTGGTGGAGGACTGTTTTATGTGCTAAGACGCACTGTGTTTAGTGTTTGGTTAGTTTTAAAGTATAGGAAATTTTATGAGCTATATCTTTTGTAGTTTACAAAATTTGGATAGGTACTGTAGTTTTTGAGATATGCGCTTTTAAAGGTCGTGCGCGCTCTGTAGAAGAGGTGAGGAAGGCGCCATCTTTGAAGGTGCATTTCTCAAAAACCATGGAAGTTATCAAACTTTGGTAAACAACAAAAATGTAGAGCGTTAAGTTTCACACATTTCTGTAATTTACCAA</canonical>
            <polymorphic>AAAATGCATGAATGGCCCAGTGGGATTTTCAGCACAATCTGAAGACCCGGGTTCGGTTCCACTCGGTGGCAAACCTTTTTTATTTTTGTGTAGACCATTTTTAGACTATCATAGAACAATCTAGAGCTGGAATTTGGGAATTTTGAAAAATCTGCAATTTTTTGGAAAAATTTTTTTGTCTGAAATTTTCAGATTTTTCAAAAAATTCTAAAATTCCTGCTCTAGACTGTTATAGAATGGTCTAAAAATGGTCCAAACGAAGAGCAAAAAGGTTTGCCACCAGGTGGAATCGAACCTGGGTCGTCAGATTGTACTTAAAATCCCACTGAGCCATCTGAGCATTTTTTGGAAAAACGCTCAAAAATCATGAAAAATAACCCTTTTTGGTTCAAAATATTTGACATTTTCCAGACAATAACCTATGGAAAATCGCTAACCGATGGGGACGTCGTAAAAGACTACGTAAAATTTGATGAGCAAGGGCAGCAAATTGATCTATYAACCAACGAACAGGCCACAACTACAGTACAACCAAAAATCAACAATTTCGTGTTCACCACCACCCCAATGTCCCCGCGGATCATTCCCGAACCTGGAGCATTGAGCCTGATAGAATCTGATGAAGGAAACAATGAAGCTCTCTATATTACTGGCAAATGGTGGATTTGGGGAATCTATTTTGGATTCATCGCTGGAACACTCTTGACGTTGGGTATTGGTGGAGGACTGTTTTATGTGCTAAGACGCACTGTGTTTAGTGTTTGGTTAGTTTTAAAGTATAGGAAATTTTATGAGCTATATCTTTTGTAGTTTACAAAATTTGGATAGGTACTGTAGTTTTTGAGATATGCGCTTTTAAAGGTCGTGCGCGCTCTGTAGAAGAGGTGAGGAAGGCGCCATCTTTGAAGGTGCATTTCTCAAAAACCATGGAAGTTATCAAACTTTGGTAAACAACAAAAATGTAGAGCGTTAAGTTTCACACATTTCTGTAATTTACCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGGTTCAAAATATTTGACATT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTCCTTCATCAGATTCTATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTGGTTCAAAATATTTGACATTTTCCAGACAATAACCTATGGAAAATCGCTAACCGATGGGGACGTCGTAAAAGACTACGTAAAATTTGATGAGCAAGGGCAGCAAATTGATCTATCAACCAACGAACAGGCCACAACTACAGTACAACCAAAAATCAACAATTTCGTGTTCACCACCACCCCAATGTCCCCGCGGATCATTCCCGAACCTGGAGCATTGAGCCTGATAGAATCTGATGAAGGAAACA</canonical_amplicon>
		<polymorphic_amplicon>TTTGGTTCAAAATATTTGACATTTTCCAGACAATAACCTATGGAAAATCGCTAACCGATGGGGACGTCGTAAAAGACTACGTAAAATTTGATGAGCAAGGGCAGCAAATTGATCTATYAACCAACGAACAGGCCACAACTACAGTACAACCAAAAATCAACAATTTCGTGTTCACCACCACCCCAATGTCCCCGCGGATCATTCCCGAACCTGGAGCATTGAGCCTGATAGAATCTGATGAAGGAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25103</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>625456</contig_pos>
        <strand>+</strand>
        <context>GAGATCAAAA[C/T]TTTTTTTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGTGCTCAATAAAAGTCATCATCATGATGCTATTCAAAGAGATCAAAA</left_flank>
        <right_flank>TTTTTTTTTAAATCTCAATTTTTTGATCAAAAAATACACTTTTAGGTCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTGGATCAGTGGGTTTTTTGGTTGTCAGATTACCAATCTGACCACTCAGGTTCGATTCCACACGGTGGCTAATTTTTTTTATTTTTATGTTGAGTACTGTAGACTAGTTTAGATGGCCTAAAATGCCTGAAAAGGCCTTTTCCGGTCATTGCTCATTGTTAGCGAGCTACCGTAATCCCTAGAAAGCTACTAAAAGCTACAATTTTCATGTCCAGTGGGGCGAAATTGCATAGCTGTCATGTTTCTGTGGAAAAAAAACGAAAATTATAGGGTCCAGGAGCCTCTAAGGGTCCTAATGAGGGGTTGTAAAAGGACTACGGTAGATTTTTTCTAGAATTTTCTAGAAAATTTCCCCAGATTATGATGTTTCTTATTTTGAGTACTACACACTAATCTTCAATTACTCCCACTTCAAAAAATATCTAATCTCGGGTGGGATAAGGTGATTTGTGCTCAATAAAAGTCATCATCATGATGCTATTCAAAGAGATCAAAATTTTTTTTTTAAATCTCAATTTTTTGATCAAAAAATACACTTTTAGGTCAGGTCAAACATTCCTAAAACGACACGCAGGAGACTGAATCAAATGAAAGATTCAGAAGGGCAACTTTTGGATTGCTCAGCTTTAAAATTTCCGGTTTGGAAGATTTTGGACCCTTTCCGGACCATCTAAACTAGCCTACTGTACTCCTCACAAAAATAAAAAAAGTTTGGAGCCAGGTGGAATCGAACCCGGGTCGTGAGATTGGTAGTCGGGAAAAATCCCACTGAGCCAAAAGTGCAATTTTCAGAAAATCGGTCAAAAACAGCTTTAAACCTCGAAATTTCGATTTTTAAACTAGTTTTTTGAGCTTTTCAATCAATTTTGACTTTAGACGCCTTTTGTCCAGCCGTTTTCCAACCAATTTAGCTGAATTCTGGGTCATTGCTCATTCTTAACAAATTCTAGGCTCGTTTAGGTAGTTTTAGGCCCTTTCAGGCCCTCTACACTAGCCT</canonical>
            <polymorphic>CTTTTGGATCAGTGGGTTTTTTGGTTGTCAGATTACCAATCTGACCACTCAGGTTCGATTCCACACGGTGGCTAATTTTTTTTATTTTTATGTTGAGTACTGTAGACTAGTTTAGATGGCCTAAAATGCCTGAAAAGGCCTTTTCCGGTCATTGCTCATTGTTAGCGAGCTACCGTAATCCCTAGAAAGCTACTAAAAGCTACAATTTTCATGTCCAGTGGGGCGAAATTGCATAGCTGTCATGTTTCTGTGGAAAAAAAACGAAAATTATAGGGTCCAGGAGCCTCTAAGGGTCCTAATGAGGGGTTGTAAAAGGACTACGGTAGATTTTTTCTAGAATTTTCTAGAAAATTTCCCCAGATTATGATGTTTCTTATTTTGAGTACTACACACTAATCTTCAATTACTCCCACTTCAAAAAATATCTAATCTCGGGTGGGATAAGGTGATTTGTGCTCAATAAAAGTCATCATCATGATGCTATTCAAAGAGATCAAAAYTTTTTTTTTAAATCTCAATTTTTTGATCAAAAAATACACTTTTAGGTCAGGTCAAACATTCCTAAAACGACACGCAGGAGACTGAATCAAATGAAAGATTCAGAAGGGCAACTTTTGGATTGCTCAGCTTTAAAATTTCCGGTTTGGAAGATTTTGGACCCTTTCCGGACCATCTAAACTAGCCTACTGTACTCCTCACAAAAATAAAAAAAGTTTGGAGCCAGGTGGAATCGAACCCGGGTCGTGAGATTGGTAGTCGGGAAAAATCCCACTGAGCCAAAAGTGCAATTTTCAGAAAATCGGTCAAAAACAGCTTTAAACCTCGAAATTTCGATTTTTAAACTAGTTTTTTGAGCTTTTCAATCAATTTTGACTTTAGACGCCTTTTGTCCAGCCGTTTTCCAACCAATTTAGCTGAATTCTGGGTCATTGCTCATTCTTAACAAATTCTAGGCTCGTTTAGGTAGTTTTAGGCCCTTTCAGGCCCTCTACACTAGCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>337 193 148 136 91 55 28 12</canonical_bands>
                <polymorphic_bands>337 284 193 91 55 28 12</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>153 130 117 96 73 72 55 52 42 40 39 39 28 23 19 12 10</canonical_bands>
                <polymorphic_bands>153 130 117 115 73 72 55 52 42 40 39 39 28 23 12 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCCAGATTATGATGTTTCTTAT</pcr_primer_p1>
		<pcr_primer_p2>CTGAATCTTTCATTTGATTCAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCCCAGATTATGATGTTTCTTATTTTGAGTACTACACACTAATCTTCAATTACTCCCACTTCAAAAAATATCTAATCTCGGGTGGGATAAGGTGATTTGTGCTCAATAAAAGTCATCATCATGATGCTATTCAAAGAGATCAAAATTTTTTTTTTAAATCTCAATTTTTTGATCAAAAAATACACTTTTAGGTCAGGTCAAACATTCCTAAAACGACACGCAGGAGACTGAATCAAATGAAAGATTCAG</canonical_amplicon>
		<polymorphic_amplicon>CCCCAGATTATGATGTTTCTTATTTTGAGTACTACACACTAATCTTCAATTACTCCCACTTCAAAAAATATCTAATCTCGGGTGGGATAAGGTGATTTGTGCTCAATAAAAGTCATCATCATGATGCTATTCAAAGAGATCAAAAYTTTTTTTTTAAATCTCAATTTTTTGATCAAAAAATACACTTTTAGGTCAGGTCAAACATTCCTAAAACGACACGCAGGAGACTGAATCAAATGAAAGATTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25104</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>625495</contig_pos>
        <strand></strand>
        <context>AAAAAATACA[C/T]TTTTAGGTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAGATCAAAATTTTTTTTTTAAATCTCAATTTTTTGATCAAAAAATACA</left_flank>
        <right_flank>TTTTAGGTCAGGTCAAACATTCCTAAAACGACACGCAGGAGACTGAATCA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGACCACTCAGGTTCGATTCCACACGGTGGCTAATTTTTTTTATTTTTATGTTGAGTACTGTAGACTAGTTTAGATGGCCTAAAATGCCTGAAAAGGCCTTTTCCGGTCATTGCTCATTGTTAGCGAGCTACCGTAATCCCTAGAAAGCTACTAAAAGCTACAATTTTCATGTCCAGTGGGGCGAAATTGCATAGCTGTCATGTTTCTGTGGAAAAAAAACGAAAATTATAGGGTCCAGGAGCCTCTAAGGGTCCTAATGAGGGGTTGTAAAAGGACTACGGTAGATTTTTTCTAGAATTTTCTAGAAAATTTCCCCAGATTATGATGTTTCTTATTTTGAGTACTACACACTAATCTTCAATTACTCCCACTTCAAAAAATATCTAATCTCGGGTGGGATAAGGTGATTTGTGCTCAATAAAAGTCATCATCATGATGCTATTCAAAGAGATCAAAATTTTTTTTTTAAATCTCAATTTTTTGATCAAAAAATACACTTTTAGGTCAGGTCAAACATTCCTAAAACGACACGCAGGAGACTGAATCAAATGAAAGATTCAGAAGGGCAACTTTTGGATTGCTCAGCTTTAAAATTTCCGGTTTGGAAGATTTTGGACCCTTTCCGGACCATCTAAACTAGCCTACTGTACTCCTCACAAAAATAAAAAAAGTTTGGAGCCAGGTGGAATCGAACCCGGGTCGTGAGATTGGTAGTCGGGAAAAATCCCACTGAGCCAAAAGTGCAATTTTCAGAAAATCGGTCAAAAACAGCTTTAAACCTCGAAATTTCGATTTTTAAACTAGTTTTTTGAGCTTTTCAATCAATTTTGACTTTAGACGCCTTTTGTCCAGCCGTTTTCCAACCAATTTAGCTGAATTCTGGGTCATTGCTCATTCTTAACAAATTCTAGGCTCGTTTAGGTAGTTTTAGGCCCTTTCAGGCCCTCTACACTAGCCTACTGTACTCTACACAAAAACAAAAAAAGTTTGGTACTAA</canonical>
            <polymorphic>TCTGACCACTCAGGTTCGATTCCACACGGTGGCTAATTTTTTTTATTTTTATGTTGAGTACTGTAGACTAGTTTAGATGGCCTAAAATGCCTGAAAAGGCCTTTTCCGGTCATTGCTCATTGTTAGCGAGCTACCGTAATCCCTAGAAAGCTACTAAAAGCTACAATTTTCATGTCCAGTGGGGCGAAATTGCATAGCTGTCATGTTTCTGTGGAAAAAAAACGAAAATTATAGGGTCCAGGAGCCTCTAAGGGTCCTAATGAGGGGTTGTAAAAGGACTACGGTAGATTTTTTCTAGAATTTTCTAGAAAATTTCCCCAGATTATGATGTTTCTTATTTTGAGTACTACACACTAATCTTCAATTACTCCCACTTCAAAAAATATCTAATCTCGGGTGGGATAAGGTGATTTGTGCTCAATAAAAGTCATCATCATGATGCTATTCAAAGAGATCAAAATTTTTTTTTTAAATCTCAATTTTTTGATCAAAAAATACAYTTTTAGGTCAGGTCAAACATTCCTAAAACGACACGCAGGAGACTGAATCAAATGAAAGATTCAGAAGGGCAACTTTTGGATTGCTCAGCTTTAAAATTTCCGGTTTGGAAGATTTTGGACCCTTTCCGGACCATCTAAACTAGCCTACTGTACTCCTCACAAAAATAAAAAAAGTTTGGAGCCAGGTGGAATCGAACCCGGGTCGTGAGATTGGTAGTCGGGAAAAATCCCACTGAGCCAAAAGTGCAATTTTCAGAAAATCGGTCAAAAACAGCTTTAAACCTCGAAATTTCGATTTTTAAACTAGTTTTTTGAGCTTTTCAATCAATTTTGACTTTAGACGCCTTTTGTCCAGCCGTTTTCCAACCAATTTAGCTGAATTCTGGGTCATTGCTCATTCTTAACAAATTCTAGGCTCGTTTAGGTAGTTTTAGGCCCTTTCAGGCCCTCTACACTAGCCTACTGTACTCTACACAAAAACAAAAAAAGTTTGGTACTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>208 150 138 126 83 34 32 29 26 26 25 20 20 19 16 14 10 8 7 5 2 2</canonical_bands>
                <polymorphic_bands>208 150 138 126 117 32 29 26 26 25 20 20 19 16 14 10 8 7 5 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCCAGATTATGATGTTTCTTAT</pcr_primer_p1>
		<pcr_primer_p2>CTGAATCTTTCATTTGATTCAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCCCAGATTATGATGTTTCTTATTTTGAGTACTACACACTAATCTTCAATTACTCCCACTTCAAAAAATATCTAATCTCGGGTGGGATAAGGTGATTTGTGCTCAATAAAAGTCATCATCATGATGCTATTCAAAGAGATCAAAATTTTTTTTTTAAATCTCAATTTTTTGATCAAAAAATACACTTTTAGGTCAGGTCAAACATTCCTAAAACGACACGCAGGAGACTGAATCAAATGAAAGATTCAG</canonical_amplicon>
		<polymorphic_amplicon>CCCCAGATTATGATGTTTCTTATTTTGAGTACTACACACTAATCTTCAATTACTCCCACTTCAAAAAATATCTAATCTCGGGTGGGATAAGGTGATTTGTGCTCAATAAAAGTCATCATCATGATGCTATTCAAAGAGATCAAAATTTTTTTTTTAAATCTCAATTTTTTGATCAAAAAATACAYTTTTAGGTCAGGTCAAACATTCCTAAAACGACACGCAGGAGACTGAATCAAATGAAAGATTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25105</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>625679</contig_pos>
        <strand></strand>
        <context>gtttggagcc[A/G]ggtggaatcg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTAAACTAGCCTACTGTACTCCTCACAAAAATAAAAAAAGTTTGGAGCC</left_flank>
        <right_flank>GGTGGAATCGAACCCGGGTCGTGAGATTGGTAGTCGGGAAAAATCCCACT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAAATTGCATAGCTGTCATGTTTCTGTGGAAAAAAAACGAAAATTATAGGGTCCAGGAGCCTCTAAGGGTCCTAATGAGGGGTTGTAAAAGGACTACGGTAGATTTTTTCTAGAATTTTCTAGAAAATTTCCCCAGATTATGATGTTTCTTATTTTGAGTACTACACACTAATCTTCAATTACTCCCACTTCAAAAAATATCTAATCTCGGGTGGGATAAGGTGATTTGTGCTCAATAAAAGTCATCATCATGATGCTATTCAAAGAGATCAAAATTTTTTTTTTAAATCTCAATTTTTTGATCAAAAAATACACTTTTAGGTCAGGTCAAACATTCCTAAAACGACACGCAGGAGACTGAATCAAATGAAAGATTCAGAAGGGCAACTTTTGGATTGCTCAGCTTTAAAATTTCCGGTTTGGAAGATTTTGGACCCTTTCCGGACCATCTAAACTAGCCTACTGTACTCCTCACAAAAATAAAAAAAGTTTGGAGCCAGGTGGAATCGAACCCGGGTCGTGAGATTGGTAGTCGGGAAAAATCCCACTGAGCCAAAAGTGCAATTTTCAGAAAATCGGTCAAAAACAGCTTTAAACCTCGAAATTTCGATTTTTAAACTAGTTTTTTGAGCTTTTCAATCAATTTTGACTTTAGACGCCTTTTGTCCAGCCGTTTTCCAACCAATTTAGCTGAATTCTGGGTCATTGCTCATTCTTAACAAATTCTAGGCTCGTTTAGGTAGTTTTAGGCCCTTTCAGGCCCTCTACACTAGCCTACTGTACTCTACACAAAAACAAAAAAAGTTTGGTACTAAGTGGGATCGAACCGGGGTCGTGAGATTGGTAGTCGGGAAAAATCCCACTGAGCCAAAAGTGCAATTTTCAGAAAATCGCCTTTTCAAAGCGTTTAGGGTAATTTTTAGGGGTTCTAAATTAGTTTTTCGTGATTTTTAAGCAATTTTAAATCTGGAACACTTTTTTCGCACCCCTTTCCAGTCA</canonical>
            <polymorphic>CGAAATTGCATAGCTGTCATGTTTCTGTGGAAAAAAAACGAAAATTATAGGGTCCAGGAGCCTCTAAGGGTCCTAATGAGGGGTTGTAAAAGGACTACGGTAGATTTTTTCTAGAATTTTCTAGAAAATTTCCCCAGATTATGATGTTTCTTATTTTGAGTACTACACACTAATCTTCAATTACTCCCACTTCAAAAAATATCTAATCTCGGGTGGGATAAGGTGATTTGTGCTCAATAAAAGTCATCATCATGATGCTATTCAAAGAGATCAAAATTTTTTTTTTAAATCTCAATTTTTTGATCAAAAAATACACTTTTAGGTCAGGTCAAACATTCCTAAAACGACACGCAGGAGACTGAATCAAATGAAAGATTCAGAAGGGCAACTTTTGGATTGCTCAGCTTTAAAATTTCCGGTTTGGAAGATTTTGGACCCTTTCCGGACCATCTAAACTAGCCTACTGTACTCCTCACAAAAATAAAAAAAGTTTGGAGCCRGGTGGAATCGAACCCGGGTCGTGAGATTGGTAGTCGGGAAAAATCCCACTGAGCCAAAAGTGCAATTTTCAGAAAATCGGTCAAAAACAGCTTTAAACCTCGAAATTTCGATTTTTAAACTAGTTTTTTGAGCTTTTCAATCAATTTTGACTTTAGACGCCTTTTGTCCAGCCGTTTTCCAACCAATTTAGCTGAATTCTGGGTCATTGCTCATTCTTAACAAATTCTAGGCTCGTTTAGGTAGTTTTAGGCCCTTTCAGGCCCTCTACACTAGCCTACTGTACTCTACACAAAAACAAAAAAAGTTTGGTACTAAGTGGGATCGAACCGGGGTCGTGAGATTGGTAGTCGGGAAAAATCCCACTGAGCCAAAAGTGCAATTTTCAGAAAATCGCCTTTTCAAAGCGTTTAGGGTAATTTTTAGGGGTTCTAAATTAGTTTTTCGTGATTTTTAAGCAATTTTAAATCTGGAACACTTTTTTCGCACCCCTTTCCAGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>501 444 55</canonical_bands>
                <polymorphic_bands>945 55</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACCATCTAAACTAGCCTACTGTACT</pcr_primer_p1>
		<pcr_primer_p2>CAATCTTGTTGAACCCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>872</pcr_amplicon_size>
		<canonical_amplicon>GACCATCTAAACTAGCCTACTGTACTCCTCACAAAAATAAAAAAAGTTTGGAGCCAGGTGGAATCGAACCCGGGT</canonical_amplicon>
		<polymorphic_amplicon>GACCATCTAAACTAGCCTACTGTACTCCTCACAAAAATAAAAAAAGTTTGGAGCCRGGTGGAATCGAACCCGGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25106</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>625697</contig_pos>
        <strand></strand>
        <context>tcgaacccgg[G/T]tcgtgagatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTCCTCACAAAAATAAAAAAAGTTTGGAGCCAGGTGGAATCGAACCCGG</left_flank>
        <right_flank>TCGTGAGATTGGTAGTCGGGAAAAATCCCACTGAGCCAAAAGTGCAATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTTTCTGTGGAAAAAAAACGAAAATTATAGGGTCCAGGAGCCTCTAAGGGTCCTAATGAGGGGTTGTAAAAGGACTACGGTAGATTTTTTCTAGAATTTTCTAGAAAATTTCCCCAGATTATGATGTTTCTTATTTTGAGTACTACACACTAATCTTCAATTACTCCCACTTCAAAAAATATCTAATCTCGGGTGGGATAAGGTGATTTGTGCTCAATAAAAGTCATCATCATGATGCTATTCAAAGAGATCAAAATTTTTTTTTTAAATCTCAATTTTTTGATCAAAAAATACACTTTTAGGTCAGGTCAAACATTCCTAAAACGACACGCAGGAGACTGAATCAAATGAAAGATTCAGAAGGGCAACTTTTGGATTGCTCAGCTTTAAAATTTCCGGTTTGGAAGATTTTGGACCCTTTCCGGACCATCTAAACTAGCCTACTGTACTCCTCACAAAAATAAAAAAAGTTTGGAGCCAGGTGGAATCGAACCCGGGTCGTGAGATTGGTAGTCGGGAAAAATCCCACTGAGCCAAAAGTGCAATTTTCAGAAAATCGGTCAAAAACAGCTTTAAACCTCGAAATTTCGATTTTTAAACTAGTTTTTTGAGCTTTTCAATCAATTTTGACTTTAGACGCCTTTTGTCCAGCCGTTTTCCAACCAATTTAGCTGAATTCTGGGTCATTGCTCATTCTTAACAAATTCTAGGCTCGTTTAGGTAGTTTTAGGCCCTTTCAGGCCCTCTACACTAGCCTACTGTACTCTACACAAAAACAAAAAAAGTTTGGTACTAAGTGGGATCGAACCGGGGTCGTGAGATTGGTAGTCGGGAAAAATCCCACTGAGCCAAAAGTGCAATTTTCAGAAAATCGCCTTTTCAAAGCGTTTAGGGTAATTTTTAGGGGTTCTAAATTAGTTTTTCGTGATTTTTAAGCAATTTTAAATCTGGAACACTTTTTTCGCACCCCTTTCCAGTCAATCTAGCTCACTTTTGAA</canonical>
            <polymorphic>ATGTTTCTGTGGAAAAAAAACGAAAATTATAGGGTCCAGGAGCCTCTAAGGGTCCTAATGAGGGGTTGTAAAAGGACTACGGTAGATTTTTTCTAGAATTTTCTAGAAAATTTCCCCAGATTATGATGTTTCTTATTTTGAGTACTACACACTAATCTTCAATTACTCCCACTTCAAAAAATATCTAATCTCGGGTGGGATAAGGTGATTTGTGCTCAATAAAAGTCATCATCATGATGCTATTCAAAGAGATCAAAATTTTTTTTTTAAATCTCAATTTTTTGATCAAAAAATACACTTTTAGGTCAGGTCAAACATTCCTAAAACGACACGCAGGAGACTGAATCAAATGAAAGATTCAGAAGGGCAACTTTTGGATTGCTCAGCTTTAAAATTTCCGGTTTGGAAGATTTTGGACCCTTTCCGGACCATCTAAACTAGCCTACTGTACTCCTCACAAAAATAAAAAAAGTTTGGAGCCAGGTGGAATCGAACCCGGKTCGTGAGATTGGTAGTCGGGAAAAATCCCACTGAGCCAAAAGTGCAATTTTCAGAAAATCGGTCAAAAACAGCTTTAAACCTCGAAATTTCGATTTTTAAACTAGTTTTTTGAGCTTTTCAATCAATTTTGACTTTAGACGCCTTTTGTCCAGCCGTTTTCCAACCAATTTAGCTGAATTCTGGGTCATTGCTCATTCTTAACAAATTCTAGGCTCGTTTAGGTAGTTTTAGGCCCTTTCAGGCCCTCTACACTAGCCTACTGTACTCTACACAAAAACAAAAAAAGTTTGGTACTAAGTGGGATCGAACCGGGGTCGTGAGATTGGTAGTCGGGAAAAATCCCACTGAGCCAAAAGTGCAATTTTCAGAAAATCGCCTTTTCAAAGCGTTTAGGGTAATTTTTAGGGGTTCTAAATTAGTTTTTCGTGATTTTTAAGCAATTTTAAATCTGGAACACTTTTTTCGCACCCCTTTCCAGTCAATCTAGCTCACTTTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 305 190</canonical_bands>
                <polymorphic_bands>810 190</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>495 315 190</canonical_bands>
                <polymorphic_bands>810 190</polymorphic_bands>
            </assay>
            <assay>
                <site>CCCGGG</site>
                <isoschizomers>
                    <enzyme>Cfr9I</enzyme>
                    <enzyme>PspAI</enzyme>
                    <enzyme>SmaI</enzyme>
                    <enzyme>XmaCI</enzyme>
                    <enzyme>XmaI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTAGCCTACTGTACTCCTCAC</pcr_primer_p1>
		<pcr_primer_p2>CAATCTTGTTGAACCCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>864</pcr_amplicon_size>
		<canonical_amplicon>AAACTAGCCTACTGTACTCCTCACAAAAATAAAAAAAGTTTGGAGCCAGGTGGAATCGAACCCGGGTCGTGAGATTGGTAGTCGG</canonical_amplicon>
		<polymorphic_amplicon>AAACTAGCCTACTGTACTCCTCACAAAAATAAAAAAAGTTTGGAGCCAGGTGGAATCGAACCCGGKTCGTGAGATTGGTAGTCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25107</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>625739</contig_pos>
        <strand></strand>
        <context>tgagccaaaa[G/A]tgcaattttc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAACCCGGGTCGTGAGATTGGTAGTCGGGAAAAATCCCACTGAGCCAAAA</left_flank>
        <right_flank>TGCAATTTTCAGAAAATCGGTCAAAAACAGCTTTAAACCTCGAAATTTCG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTCTAAGGGTCCTAATGAGGGGTTGTAAAAGGACTACGGTAGATTTTTTCTAGAATTTTCTAGAAAATTTCCCCAGATTATGATGTTTCTTATTTTGAGTACTACACACTAATCTTCAATTACTCCCACTTCAAAAAATATCTAATCTCGGGTGGGATAAGGTGATTTGTGCTCAATAAAAGTCATCATCATGATGCTATTCAAAGAGATCAAAATTTTTTTTTTAAATCTCAATTTTTTGATCAAAAAATACACTTTTAGGTCAGGTCAAACATTCCTAAAACGACACGCAGGAGACTGAATCAAATGAAAGATTCAGAAGGGCAACTTTTGGATTGCTCAGCTTTAAAATTTCCGGTTTGGAAGATTTTGGACCCTTTCCGGACCATCTAAACTAGCCTACTGTACTCCTCACAAAAATAAAAAAAGTTTGGAGCCAGGTGGAATCGAACCCGGGTCGTGAGATTGGTAGTCGGGAAAAATCCCACTGAGCCAAAAGTGCAATTTTCAGAAAATCGGTCAAAAACAGCTTTAAACCTCGAAATTTCGATTTTTAAACTAGTTTTTTGAGCTTTTCAATCAATTTTGACTTTAGACGCCTTTTGTCCAGCCGTTTTCCAACCAATTTAGCTGAATTCTGGGTCATTGCTCATTCTTAACAAATTCTAGGCTCGTTTAGGTAGTTTTAGGCCCTTTCAGGCCCTCTACACTAGCCTACTGTACTCTACACAAAAACAAAAAAAGTTTGGTACTAAGTGGGATCGAACCGGGGTCGTGAGATTGGTAGTCGGGAAAAATCCCACTGAGCCAAAAGTGCAATTTTCAGAAAATCGCCTTTTCAAAGCGTTTAGGGTAATTTTTAGGGGTTCTAAATTAGTTTTTCGTGATTTTTAAGCAATTTTAAATCTGGAACACTTTTTTCGCACCCCTTTCCAGTCAATCTAGCTCACTTTTGAAGCGTTGCTCATTCTTAACAAATTTAGGCCAATTTTCGCCTTT</canonical>
            <polymorphic>CCTCTAAGGGTCCTAATGAGGGGTTGTAAAAGGACTACGGTAGATTTTTTCTAGAATTTTCTAGAAAATTTCCCCAGATTATGATGTTTCTTATTTTGAGTACTACACACTAATCTTCAATTACTCCCACTTCAAAAAATATCTAATCTCGGGTGGGATAAGGTGATTTGTGCTCAATAAAAGTCATCATCATGATGCTATTCAAAGAGATCAAAATTTTTTTTTTAAATCTCAATTTTTTGATCAAAAAATACACTTTTAGGTCAGGTCAAACATTCCTAAAACGACACGCAGGAGACTGAATCAAATGAAAGATTCAGAAGGGCAACTTTTGGATTGCTCAGCTTTAAAATTTCCGGTTTGGAAGATTTTGGACCCTTTCCGGACCATCTAAACTAGCCTACTGTACTCCTCACAAAAATAAAAAAAGTTTGGAGCCAGGTGGAATCGAACCCGGGTCGTGAGATTGGTAGTCGGGAAAAATCCCACTGAGCCAAAARTGCAATTTTCAGAAAATCGGTCAAAAACAGCTTTAAACCTCGAAATTTCGATTTTTAAACTAGTTTTTTGAGCTTTTCAATCAATTTTGACTTTAGACGCCTTTTGTCCAGCCGTTTTCCAACCAATTTAGCTGAATTCTGGGTCATTGCTCATTCTTAACAAATTCTAGGCTCGTTTAGGTAGTTTTAGGCCCTTTCAGGCCCTCTACACTAGCCTACTGTACTCTACACAAAAACAAAAAAAGTTTGGTACTAAGTGGGATCGAACCGGGGTCGTGAGATTGGTAGTCGGGAAAAATCCCACTGAGCCAAAAGTGCAATTTTCAGAAAATCGCCTTTTCAAAGCGTTTAGGGTAATTTTTAGGGGTTCTAAATTAGTTTTTCGTGATTTTTAAGCAATTTTAAATCTGGAACACTTTTTTCGCACCCCTTTCCAGTCAATCTAGCTCACTTTTGAAGCGTTGCTCATTCTTAACAAATTTAGGCCAATTTTCGCCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>208 126 107 83 70 50 34 29 29 28 26 25 25 24 20 20 19 19 14 14 11 10 7 2</canonical_bands>
                <polymorphic_bands>222 126 107 83 70 50 34 29 29 28 26 25 25 24 20 20 19 19 14 11 10 7 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTAGCCTACTGTACTCCTCAC</pcr_primer_p1>
		<pcr_primer_p2>CAATCTTGTTGAACCCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>864</pcr_amplicon_size>
		<canonical_amplicon>AAACTAGCCTACTGTACTCCTCACAAAAATAAAAAAAGTTTGGAGCCAGGTGGAATCGAACCCGGGTCGTGAGATTGGTAGTCGGGAAAAATCCCACTGAGCCAAAAGTGCAATTTTCAGAAAATCG</canonical_amplicon>
		<polymorphic_amplicon>AAACTAGCCTACTGTACTCCTCACAAAAATAAAAAAAGTTTGGAGCCAGGTGGAATCGAACCCGGGTCGTGAGATTGGTAGTCGGGAAAAATCCCACTGAGCCAAAARTGCAATTTTCAGAAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25108</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>625946</contig_pos>
        <strand></strand>
        <context>tcaggccctc[T/C]acactagcct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTAACAAATTCTAGGCTCGTTTAGGTAGTTTTAGGCCCTTTCAGGCCCTC</left_flank>
        <right_flank>ACACTAGCCTACTGTACTCTACACAAAAACAAAAAAAGTTTGGTACTAAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATCAAAATTTTTTTTTTAAATCTCAATTTTTTGATCAAAAAATACACTTTTAGGTCAGGTCAAACATTCCTAAAACGACACGCAGGAGACTGAATCAAATGAAAGATTCAGAAGGGCAACTTTTGGATTGCTCAGCTTTAAAATTTCCGGTTTGGAAGATTTTGGACCCTTTCCGGACCATCTAAACTAGCCTACTGTACTCCTCACAAAAATAAAAAAAGTTTGGAGCCAGGTGGAATCGAACCCGGGTCGTGAGATTGGTAGTCGGGAAAAATCCCACTGAGCCAAAAGTGCAATTTTCAGAAAATCGGTCAAAAACAGCTTTAAACCTCGAAATTTCGATTTTTAAACTAGTTTTTTGAGCTTTTCAATCAATTTTGACTTTAGACGCCTTTTGTCCAGCCGTTTTCCAACCAATTTAGCTGAATTCTGGGTCATTGCTCATTCTTAACAAATTCTAGGCTCGTTTAGGTAGTTTTAGGCCCTTTCAGGCCCTCTACACTAGCCTACTGTACTCTACACAAAAACAAAAAAAGTTTGGTACTAAGTGGGATCGAACCGGGGTCGTGAGATTGGTAGTCGGGAAAAATCCCACTGAGCCAAAAGTGCAATTTTCAGAAAATCGCCTTTTCAAAGCGTTTAGGGTAATTTTTAGGGGTTCTAAATTAGTTTTTCGTGATTTTTAAGCAATTTTAAATCTGGAACACTTTTTTCGCACCCCTTTCCAGTCAATCTAGCTCACTTTTGAAGCGTTGCTCATTCTTAACAAATTTAGGCCAATTTTCGCCTTTCTAGACCTTTCCAGGCCCTCTAAACAAGTCTACAGTACTCTACACAAAAATAAAAAAGGTTTGGTATAAGGTGGAATCGAACCGGGGCCGTGAGATTGATAGTCGGGGATAATCCCACTGAGCCAAAAGTGCGATTATCAGGAAATCGATCAGAGACAGCAGAAAAATGTTCTTAGGTGGTTTTTAGGGTTTCTAAGCTATTTTAAG</canonical>
            <polymorphic>AGATCAAAATTTTTTTTTTAAATCTCAATTTTTTGATCAAAAAATACACTTTTAGGTCAGGTCAAACATTCCTAAAACGACACGCAGGAGACTGAATCAAATGAAAGATTCAGAAGGGCAACTTTTGGATTGCTCAGCTTTAAAATTTCCGGTTTGGAAGATTTTGGACCCTTTCCGGACCATCTAAACTAGCCTACTGTACTCCTCACAAAAATAAAAAAAGTTTGGAGCCAGGTGGAATCGAACCCGGGTCGTGAGATTGGTAGTCGGGAAAAATCCCACTGAGCCAAAAGTGCAATTTTCAGAAAATCGGTCAAAAACAGCTTTAAACCTCGAAATTTCGATTTTTAAACTAGTTTTTTGAGCTTTTCAATCAATTTTGACTTTAGACGCCTTTTGTCCAGCCGTTTTCCAACCAATTTAGCTGAATTCTGGGTCATTGCTCATTCTTAACAAATTCTAGGCTCGTTTAGGTAGTTTTAGGCCCTTTCAGGCCCTCYACACTAGCCTACTGTACTCTACACAAAAACAAAAAAAGTTTGGTACTAAGTGGGATCGAACCGGGGTCGTGAGATTGGTAGTCGGGAAAAATCCCACTGAGCCAAAAGTGCAATTTTCAGAAAATCGCCTTTTCAAAGCGTTTAGGGTAATTTTTAGGGGTTCTAAATTAGTTTTTCGTGATTTTTAAGCAATTTTAAATCTGGAACACTTTTTTCGCACCCCTTTCCAGTCAATCTAGCTCACTTTTGAAGCGTTGCTCATTCTTAACAAATTTAGGCCAATTTTCGCCTTTCTAGACCTTTCCAGGCCCTCTAAACAAGTCTACAGTACTCTACACAAAAATAAAAAAGGTTTGGTATAAGGTGGAATCGAACCGGGGCCGTGAGATTGATAGTCGGGGATAATCCCACTGAGCCAAAAGTGCGATTATCAGGAAATCGATCAGAGACAGCAGAAAAATGTTCTTAGGTGGTTTTTAGGGTTTCTAAGCTATTTTAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTAGCCTACTGTACTCCTCAC</pcr_primer_p1>
		<pcr_primer_p2>CAATCTTGTTGAACCCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>864</pcr_amplicon_size>
		<canonical_amplicon>AAACTAGCCTACTGTACTCCTCACAAAAATAAAAAAAGTTTGGAGCCAGGTGGAATCGAACCCGGGTCGTGAGATTGGTAGTCGGGAAAAATCCCACTGAGCCAAAAGTGCAATTTTCAGAAAATCGGTCAAAAACAGCTTTAAACCTCGAAATTTCGATTTTTAAACTAGTTTTTTGAGCTTTTCAATCAATTTTGACTTTAGACGCCTTTTGTCCAGCCGTTTTCCAACCAATTTAGCTGAATTCTGGGTCATTGCTCATTCTTAACAAATTCTAGGCTCGTTTAGGTAGTTTTAGGCCCTTTCAGGCCCTCTACACTAGCCTACTGTACTC</canonical_amplicon>
		<polymorphic_amplicon>AAACTAGCCTACTGTACTCCTCACAAAAATAAAAAAAGTTTGGAGCCAGGTGGAATCGAACCCGGGTCGTGAGATTGGTAGTCGGGAAAAATCCCACTGAGCCAAAAGTGCAATTTTCAGAAAATCGGTCAAAAACAGCTTTAAACCTCGAAATTTCGATTTTTAAACTAGTTTTTTGAGCTTTTCAATCAATTTTGACTTTAGACGCCTTTTGTCCAGCCGTTTTCCAACCAATTTAGCTGAATTCTGGGTCATTGCTCATTCTTAACAAATTCTAGGCTCGTTTAGGTAGTTTTAGGCCCTTTCAGGCCCTCYACACTAGCCTACTGTACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25109</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>720961</contig_pos>
        <strand></strand>
        <context>gaaccTTTTT[T/C]CMAAAAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCCCAAAATAGGTGCCCAAAATTTAAAGGCGCTTTGTTAAGAACCTTTTT</left_flank>
        <right_flank>CCAAAAAAAAAAAAACTTACATTGACAGCCACTGACATGACAAATTCAAA</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAATGTGAACCATTTTTATAGTTAGTAATTTTATTTGGTTAGCTATATTGATTCTTAAGATATGCGCCTTTAAACTTGGCATACCCCTTTGGGGCCGGGGGGAAAAAGTGCACCAACTTTAAAGGCGCATAACTCAAAGACTAGCAGAGCTATCAAAAATATTTTAACTAAAACAATGTTGAAAATAAAAAATTAAACATTTTAGTAGTTTGTAGGTTTTTGTAGCTATCTTGGTTCCTGAGATATGCGCCTTTAAAGTTGGCGTTTCCCCAGGGCGCCGGGGAAAAGGCGCCGCCAAATTTGAAGGCGCATAACTCAAAAACTAACATAGCTATCAAAAATACTTAAATTACAAAAATGTAGATTATAAAGTTTTAAACATGTTTGTAGTTAGCAAAATTTAGGTAGCTTTTTCGATTCTTGAGATATGCTCCTTTAAAGTTTGCGCCCAAAATAGGTGCCCAAAATTTAAAGGCGCTTTGTTAAGAACCTTTTTTCCAAAAAAAAAAAAACTTACATTGACAGCCACTGACATGACAAATTCAAAAATCGACATTGTCAATTGCTCATTGAAGACGTCCTGAAACAAGAAAATTATTTTGAAATCTCCAAAATTCAAATTCCCGCCAACCCTTTCCACTCACCCCACTCCACCATAGCACCGCATAGGCCGTAGTCATAATACACAACGGGACCGACGTTCCAAACCATGGCCAAATGAGCACTTTTAGGTACTGTAAATTTTTTTTTTTTAACTTTTGTTTGGCGCCAAATTCAAATTTTTTCATTTTTTTTAAATTGAGGTACCTTATATGCTGCATAGAGCAGTAACGCAGAGGTAAGGAGGTTGAGGATGGAAAAGATAACGCAGACAATTATGATGACATACATGGCTGGAATTTCAGACTTTTGGGAATTTTTAAATTTTTAAAAATTCCAAAAATTACCATTAGCTCTCCGCCGCTCCGGGGTTTCTGTATAGATCTGATACAAACCT</canonical>
            <polymorphic>TTGAAATGTGAACCATTTTTATAGTTAGTAATTTTATTTGGTTAGCTATATTGATTCTTAAGATATGCGCCTTTAAACTTGGCATACCCCTTTGGGGCCGGGGGGAAAAAGTGCACCAACTTTAAAGGCGCATAACTCAAAGACTAGCAGAGCTATCAAAAATATTTTAACTAAAACAATGTTGAAAATAAAAAATTAAACATTTTAGTAGTTTGTAGGTTTTTGTAGCTATCTTGGTTCCTGAGATATGCGCCTTTAAAGTTGGCGTTTCCCCAGGGCGCCGGGGAAAAGGCGCCGCCAAATTTGAAGGCGCATAACTCAAAAACTAACATAGCTATCAAAAATACTTAAATTACAAAAATGTAGATTATAAAGTTTTAAACATGTTTGTAGTTAGCAAAATTTAGGTAGCTTTTTCGATTCTTGAGATATGCTCCTTTAAAGTTTGCGCCCAAAATAGGTGCCCAAAATTTAAAGGCGCTTTGTTAAGAACCTTTTTYCCAAAAAAAAAAAAACTTACATTGACAGCCACTGACATGACAAATTCAAAAATCGACATTGTCAATTGCTCATTGAAGACGTCCTGAAACAAGAAAATTATTTTGAAATCTCCAAAATTCAAATTCCCGCCAACCCTTTCCACTCACCCCACTCCACCATAGCACCGCATAGGCCGTAGTCATAATACACAACGGGACCGACGTTCCAAACCATGGCCAAATGAGCACTTTTAGGTACTGTAAATTTTTTTTTTTTAACTTTTGTTTGGCGCCAAATTCAAATTTTTTCATTTTTTTTAAATTGAGGTACCTTATATGCTGCATAGAGCAGTAACGCAGAGGTAAGGAGGTTGAGGATGGAAAAGATAACGCAGACAATTATGATGACATACATGGCTGGAATTTCAGACTTTTGGGAATTTTTAAATTTTTAAAAATTCCAAAAATTACCATTAGCTCTCCGCCGCTCCGGGGTTTCTGTATAGATCTGATACAAACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTGGGAACCTAGAAATCTTA</pcr_primer_p1>
		<pcr_primer_p2>CGATTTTTGAATTTGTCATGT</pcr_primer_p2>
		<pcr_amplicon_size>593</pcr_amplicon_size>
		<canonical_amplicon>TTCCAAAAAAAAAAAAACTTACATTGACAGCCACTGACATGACAAATTCAAAAATCG</canonical_amplicon>
		<polymorphic_amplicon>TYCCAAAAAAAAAAAAACTTACATTGACAGCCACTGACATGACAAATTCAAAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25110</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>720963</contig_pos>
        <strand></strand>
        <context>accTTTTTYC[C/A]AAAAAAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CCAAAATAGGTGCCCAAAATTTAAAGGCGCTTTGTTAAGAACCTTTTTTC</left_flank>
        <right_flank>AAAAAAAAAAAAACTTACATTGACAGCCACTGACATGACAAATTCAAAAA</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATGTGAACCATTTTTATAGTTAGTAATTTTATTTGGTTAGCTATATTGATTCTTAAGATATGCGCCTTTAAACTTGGCATACCCCTTTGGGGCCGGGGGGAAAAAGTGCACCAACTTTAAAGGCGCATAACTCAAAGACTAGCAGAGCTATCAAAAATATTTTAACTAAAACAATGTTGAAAATAAAAAATTAAACATTTTAGTAGTTTGTAGGTTTTTGTAGCTATCTTGGTTCCTGAGATATGCGCCTTTAAAGTTGGCGTTTCCCCAGGGCGCCGGGGAAAAGGCGCCGCCAAATTTGAAGGCGCATAACTCAAAAACTAACATAGCTATCAAAAATACTTAAATTACAAAAATGTAGATTATAAAGTTTTAAACATGTTTGTAGTTAGCAAAATTTAGGTAGCTTTTTCGATTCTTGAGATATGCTCCTTTAAAGTTTGCGCCCAAAATAGGTGCCCAAAATTTAAAGGCGCTTTGTTAAGAACCTTTTTTCCAAAAAAAAAAAAACTTACATTGACAGCCACTGACATGACAAATTCAAAAATCGACATTGTCAATTGCTCATTGAAGACGTCCTGAAACAAGAAAATTATTTTGAAATCTCCAAAATTCAAATTCCCGCCAACCCTTTCCACTCACCCCACTCCACCATAGCACCGCATAGGCCGTAGTCATAATACACAACGGGACCGACGTTCCAAACCATGGCCAAATGAGCACTTTTAGGTACTGTAAATTTTTTTTTTTTAACTTTTGTTTGGCGCCAAATTCAAATTTTTTCATTTTTTTTAAATTGAGGTACCTTATATGCTGCATAGAGCAGTAACGCAGAGGTAAGGAGGTTGAGGATGGAAAAGATAACGCAGACAATTATGATGACATACATGGCTGGAATTTCAGACTTTTGGGAATTTTTAAATTTTTAAAAATTCCAAAAATTACCATTAGCTCTCCGCCGCTCCGGGGTTTCTGTATAGATCTGATACAAACCTGG</canonical>
            <polymorphic>GAAATGTGAACCATTTTTATAGTTAGTAATTTTATTTGGTTAGCTATATTGATTCTTAAGATATGCGCCTTTAAACTTGGCATACCCCTTTGGGGCCGGGGGGAAAAAGTGCACCAACTTTAAAGGCGCATAACTCAAAGACTAGCAGAGCTATCAAAAATATTTTAACTAAAACAATGTTGAAAATAAAAAATTAAACATTTTAGTAGTTTGTAGGTTTTTGTAGCTATCTTGGTTCCTGAGATATGCGCCTTTAAAGTTGGCGTTTCCCCAGGGCGCCGGGGAAAAGGCGCCGCCAAATTTGAAGGCGCATAACTCAAAAACTAACATAGCTATCAAAAATACTTAAATTACAAAAATGTAGATTATAAAGTTTTAAACATGTTTGTAGTTAGCAAAATTTAGGTAGCTTTTTCGATTCTTGAGATATGCTCCTTTAAAGTTTGCGCCCAAAATAGGTGCCCAAAATTTAAAGGCGCTTTGTTAAGAACCTTTTTTCMAAAAAAAAAAAAACTTACATTGACAGCCACTGACATGACAAATTCAAAAATCGACATTGTCAATTGCTCATTGAAGACGTCCTGAAACAAGAAAATTATTTTGAAATCTCCAAAATTCAAATTCCCGCCAACCCTTTCCACTCACCCCACTCCACCATAGCACCGCATAGGCCGTAGTCATAATACACAACGGGACCGACGTTCCAAACCATGGCCAAATGAGCACTTTTAGGTACTGTAAATTTTTTTTTTTTAACTTTTGTTTGGCGCCAAATTCAAATTTTTTCATTTTTTTTAAATTGAGGTACCTTATATGCTGCATAGAGCAGTAACGCAGAGGTAAGGAGGTTGAGGATGGAAAAGATAACGCAGACAATTATGATGACATACATGGCTGGAATTTCAGACTTTTGGGAATTTTTAAATTTTTAAAAATTCCAAAAATTACCATTAGCTCTCCGCCGCTCCGGGGTTTCTGTATAGATCTGATACAAACCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTGGGAACCTAGAAATCTTA</pcr_primer_p1>
		<pcr_primer_p2>CGATTTTTGAATTTGTCATGT</pcr_primer_p2>
		<pcr_amplicon_size>593</pcr_amplicon_size>
		<canonical_amplicon>CCAAAAAAAAAAAAACTTACATTGACAGCCACTGACATGACAAATTCAAAAATCG</canonical_amplicon>
		<polymorphic_amplicon>CMAAAAAAAAAAAAACTTACATTGACAGCCACTGACATGACAAATTCAAAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25111</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>721300</contig_pos>
        <strand>+</strand>
        <context>CAGTAACGCA[G/T]AGGTAAGGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATTTTTTTTAAATTGAGGTACCTTATATGCTGCATAGAGCAGTAACGCA</left_flank>
        <right_flank>AGGTAAGGAGGTTGAGGATGGAAAAGATAACGCAGACAATTATGATGACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATACTTAAATTACAAAAATGTAGATTATAAAGTTTTAAACATGTTTGTAGTTAGCAAAATTTAGGTAGCTTTTTCGATTCTTGAGATATGCTCCTTTAAAGTTTGCGCCCAAAATAGGTGCCCAAAATTTAAAGGCGCTTTGTTAAGAACCTTTTTTCCAAAAAAAAAAAAACTTACATTGACAGCCACTGACATGACAAATTCAAAAATCGACATTGTCAATTGCTCATTGAAGACGTCCTGAAACAAGAAAATTATTTTGAAATCTCCAAAATTCAAATTCCCGCCAACCCTTTCCACTCACCCCACTCCACCATAGCACCGCATAGGCCGTAGTCATAATACACAACGGGACCGACGTTCCAAACCATGGCCAAATGAGCACTTTTAGGTACTGTAAATTTTTTTTTTTTAACTTTTGTTTGGCGCCAAATTCAAATTTTTTCATTTTTTTTAAATTGAGGTACCTTATATGCTGCATAGAGCAGTAACGCAGAGGTAAGGAGGTTGAGGATGGAAAAGATAACGCAGACAATTATGATGACATACATGGCTGGAATTTCAGACTTTTGGGAATTTTTAAATTTTTAAAAATTCCAAAAATTACCATTAGCTCTCCGCCGCTCCGGGGTTTCTGTATAGATCTGATACAAACCTGGAAATCTCGCCTGGAAGCCATCGATTCTGAAATTTTCAGAATTTTAAGAAAAACATTTTTTGTCTGAAATTAAAGACTTACGCCCCAGTGGCCGGCAATTGTCGATTCTCATATTCAGCCAGAATATTCTTCACCACCTGAAATTGCCATCCCAATATTCCAAATTGGATGAAGCAGTAAATCTGAAATTGTATTTTTGAAAATTTTTGTTTGGCGCCAAAATTTAAAGCTTACTATATTCCAAACAGCGATTGCTATAGTGGCACCCCGTAGGCAGTATAACGGGTCCGCCATTCAAAGGAGGCGGGAACTTGAATTTTGAATTCGTACCTGTAATA</canonical>
            <polymorphic>AAAAATACTTAAATTACAAAAATGTAGATTATAAAGTTTTAAACATGTTTGTAGTTAGCAAAATTTAGGTAGCTTTTTCGATTCTTGAGATATGCTCCTTTAAAGTTTGCGCCCAAAATAGGTGCCCAAAATTTAAAGGCGCTTTGTTAAGAACCTTTTTTCCAAAAAAAAAAAAACTTACATTGACAGCCACTGACATGACAAATTCAAAAATCGACATTGTCAATTGCTCATTGAAGACGTCCTGAAACAAGAAAATTATTTTGAAATCTCCAAAATTCAAATTCCCGCCAACCCTTTCCACTCACCCCACTCCACCATAGCACCGCATAGGCCGTAGTCATAATACACAACGGGACCGACGTTCCAAACCATGGCCAAATGAGCACTTTTAGGTACTGTAAATTTTTTTTTTTTAACTTTTGTTTGGCGCCAAATTCAAATTTTTTCATTTTTTTTAAATTGAGGTACCTTATATGCTGCATAGAGCAGTAACGCAKAGGTAAGGAGGTTGAGGATGGAAAAGATAACGCAGACAATTATGATGACATACATGGCTGGAATTTCAGACTTTTGGGAATTTTTAAATTTTTAAAAATTCCAAAAATTACCATTAGCTCTCCGCCGCTCCGGGGTTTCTGTATAGATCTGATACAAACCTGGAAATCTCGCCTGGAAGCCATCGATTCTGAAATTTTCAGAATTTTAAGAAAAACATTTTTTGTCTGAAATTAAAGACTTACGCCCCAGTGGCCGGCAATTGTCGATTCTCATATTCAGCCAGAATATTCTTCACCACCTGAAATTGCCATCCCAATATTCCAAATTGGATGAAGCAGTAAATCTGAAATTGTATTTTTGAAAATTTTTGTTTGGCGCCAAAATTTAAAGCTTACTATATTCCAAACAGCGATTGCTATAGTGGCACCCCGTAGGCAGTATAACGGGTCCGCCATTCAAAGGAGGCGGGAACTTGAATTTTGAATTCGTACCTGTAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAATGAGCACTTTTAGGTACTG</pcr_primer_p1>
		<pcr_primer_p2>GGAGAGCTAATGGTAATTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CAAATGAGCACTTTTAGGTACTGTAAATTTTTTTTTTTTAACTTTTGTTTGGCGCCAAATTCAAATTTTTTCATTTTTTTTAAATTGAGGTACCTTATATGCTGCATAGAGCAGTAACGCAGAGGTAAGGAGGTTGAGGATGGAAAAGATAACGCAGACAATTATGATGACATACATGGCTGGAATTTCAGACTTTTGGGAATTTTTAAATTTTTAAAAATTCCAAAAATTACCATTAGCTCTCC</canonical_amplicon>
		<polymorphic_amplicon>CAAATGAGCACTTTTAGGTACTGTAAATTTTTTTTTTTTAACTTTTGTTTGGCGCCAAATTCAAATTTTTTCATTTTTTTTAAATTGAGGTACCTTATATGCTGCATAGAGCAGTAACGCAKAGGTAAGGAGGTTGAGGATGGAAAAGATAACGCAGACAATTATGATGACATACATGGCTGGAATTTCAGACTTTTGGGAATTTTTAAATTTTTAAAAATTCCAAAAATTACCATTAGCTCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25112</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>721457</contig_pos>
        <strand>+</strand>
        <context>ATCTGATACA[A/G]RCCTGGAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTACCATTAGCTCTCCGCCGCTCCGGGGTTTCTGTATAGATCTGATACA</left_flank>
        <right_flank>ACCTGGAAATCTCGCCTGGAAGCCATCGATTCTGAAATTTTCAGAATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCCAAAAAAAAAAAAACTTACATTGACAGCCACTGACATGACAAATTCAAAAATCGACATTGTCAATTGCTCATTGAAGACGTCCTGAAACAAGAAAATTATTTTGAAATCTCCAAAATTCAAATTCCCGCCAACCCTTTCCACTCACCCCACTCCACCATAGCACCGCATAGGCCGTAGTCATAATACACAACGGGACCGACGTTCCAAACCATGGCCAAATGAGCACTTTTAGGTACTGTAAATTTTTTTTTTTTAACTTTTGTTTGGCGCCAAATTCAAATTTTTTCATTTTTTTTAAATTGAGGTACCTTATATGCTGCATAGAGCAGTAACGCAGAGGTAAGGAGGTTGAGGATGGAAAAGATAACGCAGACAATTATGATGACATACATGGCTGGAATTTCAGACTTTTGGGAATTTTTAAATTTTTAAAAATTCCAAAAATTACCATTAGCTCTCCGCCGCTCCGGGGTTTCTGTATAGATCTGATACAAACCTGGAAATCTCGCCTGGAAGCCATCGATTCTGAAATTTTCAGAATTTTAAGAAAAACATTTTTTGTCTGAAATTAAAGACTTACGCCCCAGTGGCCGGCAATTGTCGATTCTCATATTCAGCCAGAATATTCTTCACCACCTGAAATTGCCATCCCAATATTCCAAATTGGATGAAGCAGTAAATCTGAAATTGTATTTTTGAAAATTTTTGTTTGGCGCCAAAATTTAAAGCTTACTATATTCCAAACAGCGATTGCTATAGTGGCACCCCGTAGGCAGTATAACGGGTCCGCCATTCAAAGGAGGCGGGAACTTGAATTTTGAATTCGTACCTGTAATATTAAAATTTAAGAATAAATTCTAAAAAAATTTGCATGAGTCACAAGATGTATATACAATTGGAGGAGAAATGTATGAAATAAGAGAGAGAGAGAGAGAGAGAGAGAGACGCACAGAGGAAGAGAAAAGCAAACAAACAGTGCGGGTAGGCAGGTGAG</canonical>
            <polymorphic>TTTTCCAAAAAAAAAAAAACTTACATTGACAGCCACTGACATGACAAATTCAAAAATCGACATTGTCAATTGCTCATTGAAGACGTCCTGAAACAAGAAAATTATTTTGAAATCTCCAAAATTCAAATTCCCGCCAACCCTTTCCACTCACCCCACTCCACCATAGCACCGCATAGGCCGTAGTCATAATACACAACGGGACCGACGTTCCAAACCATGGCCAAATGAGCACTTTTAGGTACTGTAAATTTTTTTTTTTTAACTTTTGTTTGGCGCCAAATTCAAATTTTTTCATTTTTTTTAAATTGAGGTACCTTATATGCTGCATAGAGCAGTAACGCAGAGGTAAGGAGGTTGAGGATGGAAAAGATAACGCAGACAATTATGATGACATACATGGCTGGAATTTCAGACTTTTGGGAATTTTTAAATTTTTAAAAATTCCAAAAATTACCATTAGCTCTCCGCCGCTCCGGGGTTTCTGTATAGATCTGATACARACCTGGAAATCTCGCCTGGAAGCCATCGATTCTGAAATTTTCAGAATTTTAAGAAAAACATTTTTTGTCTGAAATTAAAGACTTACGCCCCAGTGGCCGGCAATTGTCGATTCTCATATTCAGCCAGAATATTCTTCACCACCTGAAATTGCCATCCCAATATTCCAAATTGGATGAAGCAGTAAATCTGAAATTGTATTTTTGAAAATTTTTGTTTGGCGCCAAAATTTAAAGCTTACTATATTCCAAACAGCGATTGCTATAGTGGCACCCCGTAGGCAGTATAACGGGTCCGCCATTCAAAGGAGGCGGGAACTTGAATTTTGAATTCGTACCTGTAATATTAAAATTTAAGAATAAATTCTAAAAAAATTTGCATGAGTCACAAGATGTATATACAATTGGAGGAGAAATGTATGAAATAAGAGAGAGAGAGAGAGAGAGAGAGAGACGCACAGAGGAAGAGAAAAGCAAACAAACAGTGCGGGTAGGCAGGTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAATTACCATTAGCTCTCC</pcr_primer_p1>
		<pcr_primer_p2>CAATTTCAGATTTACTGCTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATTACCATTAGCTCTCCGCCGCTCCGGGGTTTCTGTATAGATCTGATACAAACCTGGAAATCTCGCCTGGAAGCCATCGATTCTGAAATTTTCAGAATTTTAAGAAAAACATTTTTTGTCTGAAATTAAAGACTTACGCCCCAGTGGCCGGCAATTGTCGATTCTCATATTCAGCCAGAATATTCTTCACCACCTGAAATTGCCATCCCAATATTCCAAATTGGATGAAGCAGTAAATCTGAAATTG</canonical_amplicon>
		<polymorphic_amplicon>CAAAAATTACCATTAGCTCTCCGCCGCTCCGGGGTTTCTGTATAGATCTGATACARACCTGGAAATCTCGCCTGGAAGCCATCGATTCTGAAATTTTCAGAATTTTAAGAAAAACATTTTTTGTCTGAAATTAAAGACTTACGCCCCAGTGGCCGGCAATTGTCGATTCTCATATTCAGCCAGAATATTCTTCACCACCTGAAATTGCCATCCCAATATTCCAAATTGGATGAAGCAGTAAATCTGAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25113</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>721458</contig_pos>
        <strand>+</strand>
        <context>TCTGATACAR[A/G]CCTGGAAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTACCATTAGCTCTCCGCCGCTCCGGGGTTTCTGTATAGATCTGATACAA</left_flank>
        <right_flank>CCTGGAAATCTCGCCTGGAAGCCATCGATTCTGAAATTTTCAGAATTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCAAAAAAAAAAAAACTTACATTGACAGCCACTGACATGACAAATTCAAAAATCGACATTGTCAATTGCTCATTGAAGACGTCCTGAAACAAGAAAATTATTTTGAAATCTCCAAAATTCAAATTCCCGCCAACCCTTTCCACTCACCCCACTCCACCATAGCACCGCATAGGCCGTAGTCATAATACACAACGGGACCGACGTTCCAAACCATGGCCAAATGAGCACTTTTAGGTACTGTAAATTTTTTTTTTTTAACTTTTGTTTGGCGCCAAATTCAAATTTTTTCATTTTTTTTAAATTGAGGTACCTTATATGCTGCATAGAGCAGTAACGCAGAGGTAAGGAGGTTGAGGATGGAAAAGATAACGCAGACAATTATGATGACATACATGGCTGGAATTTCAGACTTTTGGGAATTTTTAAATTTTTAAAAATTCCAAAAATTACCATTAGCTCTCCGCCGCTCCGGGGTTTCTGTATAGATCTGATACAAACCTGGAAATCTCGCCTGGAAGCCATCGATTCTGAAATTTTCAGAATTTTAAGAAAAACATTTTTTGTCTGAAATTAAAGACTTACGCCCCAGTGGCCGGCAATTGTCGATTCTCATATTCAGCCAGAATATTCTTCACCACCTGAAATTGCCATCCCAATATTCCAAATTGGATGAAGCAGTAAATCTGAAATTGTATTTTTGAAAATTTTTGTTTGGCGCCAAAATTTAAAGCTTACTATATTCCAAACAGCGATTGCTATAGTGGCACCCCGTAGGCAGTATAACGGGTCCGCCATTCAAAGGAGGCGGGAACTTGAATTTTGAATTCGTACCTGTAATATTAAAATTTAAGAATAAATTCTAAAAAAATTTGCATGAGTCACAAGATGTATATACAATTGGAGGAGAAATGTATGAAATAAGAGAGAGAGAGAGAGAGAGAGAGAGACGCACAGAGGAAGAGAAAAGCAAACAAACAGTGCGGGTAGGCAGGTGAGC</canonical>
            <polymorphic>TTTCCAAAAAAAAAAAAACTTACATTGACAGCCACTGACATGACAAATTCAAAAATCGACATTGTCAATTGCTCATTGAAGACGTCCTGAAACAAGAAAATTATTTTGAAATCTCCAAAATTCAAATTCCCGCCAACCCTTTCCACTCACCCCACTCCACCATAGCACCGCATAGGCCGTAGTCATAATACACAACGGGACCGACGTTCCAAACCATGGCCAAATGAGCACTTTTAGGTACTGTAAATTTTTTTTTTTTAACTTTTGTTTGGCGCCAAATTCAAATTTTTTCATTTTTTTTAAATTGAGGTACCTTATATGCTGCATAGAGCAGTAACGCAGAGGTAAGGAGGTTGAGGATGGAAAAGATAACGCAGACAATTATGATGACATACATGGCTGGAATTTCAGACTTTTGGGAATTTTTAAATTTTTAAAAATTCCAAAAATTACCATTAGCTCTCCGCCGCTCCGGGGTTTCTGTATAGATCTGATACAARCCTGGAAATCTCGCCTGGAAGCCATCGATTCTGAAATTTTCAGAATTTTAAGAAAAACATTTTTTGTCTGAAATTAAAGACTTACGCCCCAGTGGCCGGCAATTGTCGATTCTCATATTCAGCCAGAATATTCTTCACCACCTGAAATTGCCATCCCAATATTCCAAATTGGATGAAGCAGTAAATCTGAAATTGTATTTTTGAAAATTTTTGTTTGGCGCCAAAATTTAAAGCTTACTATATTCCAAACAGCGATTGCTATAGTGGCACCCCGTAGGCAGTATAACGGGTCCGCCATTCAAAGGAGGCGGGAACTTGAATTTTGAATTCGTACCTGTAATATTAAAATTTAAGAATAAATTCTAAAAAAATTTGCATGAGTCACAAGATGTATATACAATTGGAGGAGAAATGTATGAAATAAGAGAGAGAGAGAGAGAGAGAGAGAGACGCACAGAGGAAGAGAAAAGCAAACAAACAGTGCGGGTAGGCAGGTGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAATTACCATTAGCTCTCC</pcr_primer_p1>
		<pcr_primer_p2>CAATTTCAGATTTACTGCTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATTACCATTAGCTCTCCGCCGCTCCGGGGTTTCTGTATAGATCTGATACAAACCTGGAAATCTCGCCTGGAAGCCATCGATTCTGAAATTTTCAGAATTTTAAGAAAAACATTTTTTGTCTGAAATTAAAGACTTACGCCCCAGTGGCCGGCAATTGTCGATTCTCATATTCAGCCAGAATATTCTTCACCACCTGAAATTGCCATCCCAATATTCCAAATTGGATGAAGCAGTAAATCTGAAATTG</canonical_amplicon>
		<polymorphic_amplicon>CAAAAATTACCATTAGCTCTCCGCCGCTCCGGGGTTTCTGTATAGATCTGATACAARCCTGGAAATCTCGCCTGGAAGCCATCGATTCTGAAATTTTCAGAATTTTAAGAAAAACATTTTTTGTCTGAAATTAAAGACTTACGCCCCAGTGGCCGGCAATTGTCGATTCTCATATTCAGCCAGAATATTCTTCACCACCTGAAATTGCCATCCCAATATTCCAAATTGGATGAAGCAGTAAATCTGAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25114</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>723125</contig_pos>
        <strand></strand>
        <context>aacttctgga[C/T]ggaagttgag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGA</left_flank>
        <right_flank>GGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTAGTTAACAATTTTAATCTAGCTATCTTTGTTTTTGAGTTATACGATTTTGAAGTTGACTTGTTTTTTTGTTGATTTTCTGAATTTTAATCAATCAATTTGGCCAGATTCTGACATTTTAATCAATTCCAAAAACTTGAGAGCGTCATATTCTTTTTTTTTCATTCTATCCGTTAAGTTTCCTTTCTTGGTTTGTTGAAATCCCAATTTTTTAGGCATCGTGACTCTCTTGTGTAAGGACCAGCTTCTAAATCTTGTGAACCTTGTGATGAAGGAACTAGAAAAATGATAGATCCACATTTGGCTCCATTTTGAAAGGATCTTTCTTCTTCCAGGCTGAATATCTAGCCTTCTAGACAATATACAAAAAATTGTCAACTATGAAAATGTAGATCTCAAAATTTAGTACATATCACTACTTGACTACTATTTGTTACCTAAATTGGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAGTATATTCTGATCCAAATGTTAAGCATGATATCTACATTTC</canonical>
            <polymorphic>TTTTTTTAGTTAACAATTTTAATCTAGCTATCTTTGTTTTTGAGTTATACGATTTTGAAGTTGACTTGTTTTTTTGTTGATTTTCTGAATTTTAATCAATCAATTTGGCCAGATTCTGACATTTTAATCAATTCCAAAAACTTGAGAGCGTCATATTCTTTTTTTTTCATTCTATCCGTTAAGTTTCCTTTCTTGGTTTGTTGAAATCCCAATTTTTTAGGCATCGTGACTCTCTTGTGTAAGGACCAGCTTCTAAATCTTGTGAACCTTGTGATGAAGGAACTAGAAAAATGATAGATCCACATTTGGCTCCATTTTGAAAGGATCTTTCTTCTTCCAGGCTGAATATCTAGCCTTCTAGACAATATACAAAAAATTGTCAACTATGAAAATGTAGATCTCAAAATTTAGTACATATCACTACTTGACTACTATTTGTTACCTAAATTGGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGAYGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAGTATATTCTGATCCAAATGTTAAGCATGATATCTACATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTAAATTGGTTCAAGAGATAAT</pcr_primer_p1>
		<pcr_primer_p2>CTTCGAGACTCCAGATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>520</pcr_amplicon_size>
		<canonical_amplicon>ACCTAAATTGGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAG</canonical_amplicon>
		<polymorphic_amplicon>ACCTAAATTGGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGAYGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25115</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>723221</contig_pos>
        <strand></strand>
        <context>gtcggattat[G/A]gccggaattt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTAT</left_flank>
        <right_flank>GCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATCAATTTGGCCAGATTCTGACATTTTAATCAATTCCAAAAACTTGAGAGCGTCATATTCTTTTTTTTTCATTCTATCCGTTAAGTTTCCTTTCTTGGTTTGTTGAAATCCCAATTTTTTAGGCATCGTGACTCTCTTGTGTAAGGACCAGCTTCTAAATCTTGTGAACCTTGTGATGAAGGAACTAGAAAAATGATAGATCCACATTTGGCTCCATTTTGAAAGGATCTTTCTTCTTCCAGGCTGAATATCTAGCCTTCTAGACAATATACAAAAAATTGTCAACTATGAAAATGTAGATCTCAAAATTTAGTACATATCACTACTTGACTACTATTTGTTACCTAAATTGGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAGTATATTCTGATCCAAATGTTAAGCATGATATCTACATTTCGTTTAGTAGCATTGTATATTGTTGGAAAGCTTATAAAATATCCTACAAACTAATACAACTGTTGTTCATTTAGCTGGAATCTCAAGAGCTTATAGA</canonical>
            <polymorphic>CAATCAATTTGGCCAGATTCTGACATTTTAATCAATTCCAAAAACTTGAGAGCGTCATATTCTTTTTTTTTCATTCTATCCGTTAAGTTTCCTTTCTTGGTTTGTTGAAATCCCAATTTTTTAGGCATCGTGACTCTCTTGTGTAAGGACCAGCTTCTAAATCTTGTGAACCTTGTGATGAAGGAACTAGAAAAATGATAGATCCACATTTGGCTCCATTTTGAAAGGATCTTTCTTCTTCCAGGCTGAATATCTAGCCTTCTAGACAATATACAAAAAATTGTCAACTATGAAAATGTAGATCTCAAAATTTAGTACATATCACTACTTGACTACTATTTGTTACCTAAATTGGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATRGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAGTATATTCTGATCCAAATGTTAAGCATGATATCTACATTTCGTTTAGTAGCATTGTATATTGTTGGAAAGCTTATAAAATATCCTACAAACTAATACAACTGTTGTTCATTTAGCTGGAATCTCAAGAGCTTATAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>489 457 42 12</canonical_bands>
                <polymorphic_bands>531 457 12</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>489 459 42 10</canonical_bands>
                <polymorphic_bands>531 459 10</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>141 129 124 111 77 63 60 44 38 36 34 32 26 15 14 13 12 12 8 7 4</canonical_bands>
                <polymorphic_bands>141 129 124 115 111 63 60 44 36 34 32 26 15 14 13 12 12 8 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTCAAGAGATAATTAGCGTTAC</pcr_primer_p1>
		<pcr_primer_p2>CTTCGAGACTCCAGATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>511</pcr_amplicon_size>
		<canonical_amplicon>GGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAG</canonical_amplicon>
		<polymorphic_amplicon>GGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATRGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25116</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>723283</contig_pos>
        <strand></strand>
        <context>ttgtcggatc[T/A]tggtcggctt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATC</left_flank>
        <right_flank>TGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTTTTCATTCTATCCGTTAAGTTTCCTTTCTTGGTTTGTTGAAATCCCAATTTTTTAGGCATCGTGACTCTCTTGTGTAAGGACCAGCTTCTAAATCTTGTGAACCTTGTGATGAAGGAACTAGAAAAATGATAGATCCACATTTGGCTCCATTTTGAAAGGATCTTTCTTCTTCCAGGCTGAATATCTAGCCTTCTAGACAATATACAAAAAATTGTCAACTATGAAAATGTAGATCTCAAAATTTAGTACATATCACTACTTGACTACTATTTGTTACCTAAATTGGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAGTATATTCTGATCCAAATGTTAAGCATGATATCTACATTTCGTTTAGTAGCATTGTATATTGTTGGAAAGCTTATAAAATATCCTACAAACTAATACAACTGTTGTTCATTTAGCTGGAATCTCAAGAGCTTATAGAGTGGGATCTTTGGTATAACTGGGATTCTAAGTCTTAGCTTGTAACCTTCGCCTAACTTTCTC</canonical>
            <polymorphic>TTTTTTTTTCATTCTATCCGTTAAGTTTCCTTTCTTGGTTTGTTGAAATCCCAATTTTTTAGGCATCGTGACTCTCTTGTGTAAGGACCAGCTTCTAAATCTTGTGAACCTTGTGATGAAGGAACTAGAAAAATGATAGATCCACATTTGGCTCCATTTTGAAAGGATCTTTCTTCTTCCAGGCTGAATATCTAGCCTTCTAGACAATATACAAAAAATTGTCAACTATGAAAATGTAGATCTCAAAATTTAGTACATATCACTACTTGACTACTATTTGTTACCTAAATTGGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCWTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAGTATATTCTGATCCAAATGTTAAGCATGATATCTACATTTCGTTTAGTAGCATTGTATATTGTTGGAAAGCTTATAAAATATCCTACAAACTAATACAACTGTTGTTCATTTAGCTGGAATCTCAAGAGCTTATAGAGTGGGATCTTTGGTATAACTGGGATTCTAAGTCTTAGCTTGTAACCTTCGCCTAACTTTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>447 138 134 123 73 58 27</canonical_bands>
                <polymorphic_bands>570 138 134 73 58 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTCAAGAGATAATTAGCGTTAC</pcr_primer_p1>
		<pcr_primer_p2>CTTCGAGACTCCAGATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>511</pcr_amplicon_size>
		<canonical_amplicon>GGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAG</canonical_amplicon>
		<polymorphic_amplicon>GGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCWTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25117</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>723361</contig_pos>
        <strand></strand>
        <context>ctgagtAGTT[T/A]CTGTTACCCC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTT</left_flank>
        <right_flank>CTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTAAGGACCAGCTTCTAAATCTTGTGAACCTTGTGATGAAGGAACTAGAAAAATGATAGATCCACATTTGGCTCCATTTTGAAAGGATCTTTCTTCTTCCAGGCTGAATATCTAGCCTTCTAGACAATATACAAAAAATTGTCAACTATGAAAATGTAGATCTCAAAATTTAGTACATATCACTACTTGACTACTATTTGTTACCTAAATTGGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAGTATATTCTGATCCAAATGTTAAGCATGATATCTACATTTCGTTTAGTAGCATTGTATATTGTTGGAAAGCTTATAAAATATCCTACAAACTAATACAACTGTTGTTCATTTAGCTGGAATCTCAAGAGCTTATAGAGTGGGATCTTTGGTATAACTGGGATTCTAAGTCTTAGCTTGTAACCTTCGCCTAACTTTCTCTTTTCAAAAAAAAAAAATAATTTCTCTCCTCAAGGTCTTTTTGACACTTTCCTCTTCTTCATGTATTGTCTGTGCCCT</canonical>
            <polymorphic>GTGTAAGGACCAGCTTCTAAATCTTGTGAACCTTGTGATGAAGGAACTAGAAAAATGATAGATCCACATTTGGCTCCATTTTGAAAGGATCTTTCTTCTTCCAGGCTGAATATCTAGCCTTCTAGACAATATACAAAAAATTGTCAACTATGAAAATGTAGATCTCAAAATTTAGTACATATCACTACTTGACTACTATTTGTTACCTAAATTGGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTWCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAGTATATTCTGATCCAAATGTTAAGCATGATATCTACATTTCGTTTAGTAGCATTGTATATTGTTGGAAAGCTTATAAAATATCCTACAAACTAATACAACTGTTGTTCATTTAGCTGGAATCTCAAGAGCTTATAGAGTGGGATCTTTGGTATAACTGGGATTCTAAGTCTTAGCTTGTAACCTTCGCCTAACTTTCTCTTTTCAAAAAAAAAAAATAATTTCTCTCCTCAAGGTCTTTTTGACACTTTCCTCTTCTTCATGTATTGTCTGTGCCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTCAAGAGATAATTAGCGTTAC</pcr_primer_p1>
		<pcr_primer_p2>CTTCGAGACTCCAGATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>511</pcr_amplicon_size>
		<canonical_amplicon>GGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAG</canonical_amplicon>
		<polymorphic_amplicon>GGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTWCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25118</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>723372</contig_pos>
        <strand></strand>
        <context>CTGTTACCCC[A/C]TCCTCCCccc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCC</left_flank>
        <right_flank>TCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTTCTAAATCTTGTGAACCTTGTGATGAAGGAACTAGAAAAATGATAGATCCACATTTGGCTCCATTTTGAAAGGATCTTTCTTCTTCCAGGCTGAATATCTAGCCTTCTAGACAATATACAAAAAATTGTCAACTATGAAAATGTAGATCTCAAAATTTAGTACATATCACTACTTGACTACTATTTGTTACCTAAATTGGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAGTATATTCTGATCCAAATGTTAAGCATGATATCTACATTTCGTTTAGTAGCATTGTATATTGTTGGAAAGCTTATAAAATATCCTACAAACTAATACAACTGTTGTTCATTTAGCTGGAATCTCAAGAGCTTATAGAGTGGGATCTTTGGTATAACTGGGATTCTAAGTCTTAGCTTGTAACCTTCGCCTAACTTTCTCTTTTCAAAAAAAAAAAATAATTTCTCTCCTCAAGGTCTTTTTGACACTTTCCTCTTCTTCATGTATTGTCTGTGCCCTCTTACTATCTA</canonical>
            <polymorphic>AGCTTCTAAATCTTGTGAACCTTGTGATGAAGGAACTAGAAAAATGATAGATCCACATTTGGCTCCATTTTGAAAGGATCTTTCTTCTTCCAGGCTGAATATCTAGCCTTCTAGACAATATACAAAAAATTGTCAACTATGAAAATGTAGATCTCAAAATTTAGTACATATCACTACTTGACTACTATTTGTTACCTAAATTGGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCMTCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAGTATATTCTGATCCAAATGTTAAGCATGATATCTACATTTCGTTTAGTAGCATTGTATATTGTTGGAAAGCTTATAAAATATCCTACAAACTAATACAACTGTTGTTCATTTAGCTGGAATCTCAAGAGCTTATAGAGTGGGATCTTTGGTATAACTGGGATTCTAAGTCTTAGCTTGTAACCTTCGCCTAACTTTCTCTTTTCAAAAAAAAAAAATAATTTCTCTCCTCAAGGTCTTTTTGACACTTTCCTCTTCTTCATGTATTGTCTGTGCCCTCTTACTATCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTCAAGAGATAATTAGCGTTAC</pcr_primer_p1>
		<pcr_primer_p2>CTTCGAGACTCCAGATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>511</pcr_amplicon_size>
		<canonical_amplicon>GGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAG</canonical_amplicon>
		<polymorphic_amplicon>GGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCMTCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25119</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>723451</contig_pos>
        <strand></strand>
        <context>gtcaattagc[G/A]aaatgtttat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGC</left_flank>
        <right_flank>AAATGTTTATCATAATATTACCTATATTTTATCAATTAACAAGGTTCAGA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTCTTCTTCCAGGCTGAATATCTAGCCTTCTAGACAATATACAAAAAATTGTCAACTATGAAAATGTAGATCTCAAAATTTAGTACATATCACTACTTGACTACTATTTGTTACCTAAATTGGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAGTATATTCTGATCCAAATGTTAAGCATGATATCTACATTTCGTTTAGTAGCATTGTATATTGTTGGAAAGCTTATAAAATATCCTACAAACTAATACAACTGTTGTTCATTTAGCTGGAATCTCAAGAGCTTATAGAGTGGGATCTTTGGTATAACTGGGATTCTAAGTCTTAGCTTGTAACCTTCGCCTAACTTTCTCTTTTCAAAAAAAAAAAATAATTTCTCTCCTCAAGGTCTTTTTGACACTTTCCTCTTCTTCATGTATTGTCTGTGCCCTCTTACTATCTATCAACATGTGTTCTTCTCTCCTTCTTCTTCATTTTTCTACCGCCACCACCGCCGTTGCGTTCTTCCTCTTCTTCTTGCT</canonical>
            <polymorphic>CTTTCTTCTTCCAGGCTGAATATCTAGCCTTCTAGACAATATACAAAAAATTGTCAACTATGAAAATGTAGATCTCAAAATTTAGTACATATCACTACTTGACTACTATTTGTTACCTAAATTGGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCRAAATGTTTATCATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAGTATATTCTGATCCAAATGTTAAGCATGATATCTACATTTCGTTTAGTAGCATTGTATATTGTTGGAAAGCTTATAAAATATCCTACAAACTAATACAACTGTTGTTCATTTAGCTGGAATCTCAAGAGCTTATAGAGTGGGATCTTTGGTATAACTGGGATTCTAAGTCTTAGCTTGTAACCTTCGCCTAACTTTCTCTTTTCAAAAAAAAAAAATAATTTCTCTCCTCAAGGTCTTTTTGACACTTTCCTCTTCTTCATGTATTGTCTGTGCCCTCTTACTATCTATCAACATGTGTTCTTCTCTCCTTCTTCTTCATTTTTCTACCGCCACCACCGCCGTTGCGTTCTTCCTCTTCTTCTTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTCAAGAGATAATTAGCGTTAC</pcr_primer_p1>
		<pcr_primer_p2>CTTCGAGACTCCAGATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>511</pcr_amplicon_size>
		<canonical_amplicon>GGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAG</canonical_amplicon>
		<polymorphic_amplicon>GGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCRAAATGTTTATCATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25120</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>723462</contig_pos>
        <strand></strand>
        <context>aaatgtttat[C/T]ataatattay</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTAT</left_flank>
        <right_flank>ATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGGCTGAATATCTAGCCTTCTAGACAATATACAAAAAATTGTCAACTATGAAAATGTAGATCTCAAAATTTAGTACATATCACTACTTGACTACTATTTGTTACCTAAATTGGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAGTATATTCTGATCCAAATGTTAAGCATGATATCTACATTTCGTTTAGTAGCATTGTATATTGTTGGAAAGCTTATAAAATATCCTACAAACTAATACAACTGTTGTTCATTTAGCTGGAATCTCAAGAGCTTATAGAGTGGGATCTTTGGTATAACTGGGATTCTAAGTCTTAGCTTGTAACCTTCGCCTAACTTTCTCTTTTCAAAAAAAAAAAATAATTTCTCTCCTCAAGGTCTTTTTGACACTTTCCTCTTCTTCATGTATTGTCTGTGCCCTCTTACTATCTATCAACATGTGTTCTTCTCTCCTTCTTCTTCATTTTTCTACCGCCACCACCGCCGTTGCGTTCTTCCTCTTCTTCTTGCTAACCAAACCCC</canonical>
            <polymorphic>CAGGCTGAATATCTAGCCTTCTAGACAATATACAAAAAATTGTCAACTATGAAAATGTAGATCTCAAAATTTAGTACATATCACTACTTGACTACTATTTGTTACCTAAATTGGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATYATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAGTATATTCTGATCCAAATGTTAAGCATGATATCTACATTTCGTTTAGTAGCATTGTATATTGTTGGAAAGCTTATAAAATATCCTACAAACTAATACAACTGTTGTTCATTTAGCTGGAATCTCAAGAGCTTATAGAGTGGGATCTTTGGTATAACTGGGATTCTAAGTCTTAGCTTGTAACCTTCGCCTAACTTTCTCTTTTCAAAAAAAAAAAATAATTTCTCTCCTCAAGGTCTTTTTGACACTTTCCTCTTCTTCATGTATTGTCTGTGCCCTCTTACTATCTATCAACATGTGTTCTTCTCTCCTTCTTCTTCATTTTTCTACCGCCACCACCGCCGTTGCGTTCTTCCTCTTCTTCTTGCTAACCAAACCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTCAAGAGATAATTAGCGTTAC</pcr_primer_p1>
		<pcr_primer_p2>CTTCGAGACTCCAGATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>511</pcr_amplicon_size>
		<canonical_amplicon>GGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAG</canonical_amplicon>
		<polymorphic_amplicon>GGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATYATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25121</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>723472</contig_pos>
        <strand></strand>
        <context>yataatatta[C/T]ctatatttta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTA</left_flank>
        <right_flank>CTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTAGCCTTCTAGACAATATACAAAAAATTGTCAACTATGAAAATGTAGATCTCAAAATTTAGTACATATCACTACTTGACTACTATTTGTTACCTAAATTGGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAGTATATTCTGATCCAAATGTTAAGCATGATATCTACATTTCGTTTAGTAGCATTGTATATTGTTGGAAAGCTTATAAAATATCCTACAAACTAATACAACTGTTGTTCATTTAGCTGGAATCTCAAGAGCTTATAGAGTGGGATCTTTGGTATAACTGGGATTCTAAGTCTTAGCTTGTAACCTTCGCCTAACTTTCTCTTTTCAAAAAAAAAAAATAATTTCTCTCCTCAAGGTCTTTTTGACACTTTCCTCTTCTTCATGTATTGTCTGTGCCCTCTTACTATCTATCAACATGTGTTCTTCTCTCCTTCTTCTTCATTTTTCTACCGCCACCACCGCCGTTGCGTTCTTCCTCTTCTTCTTGCTAACCAAACCCCTACATAACAC</canonical>
            <polymorphic>ATCTAGCCTTCTAGACAATATACAAAAAATTGTCAACTATGAAAATGTAGATCTCAAAATTTAGTACATATCACTACTTGACTACTATTTGTTACCTAAATTGGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTAYCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAGTATATTCTGATCCAAATGTTAAGCATGATATCTACATTTCGTTTAGTAGCATTGTATATTGTTGGAAAGCTTATAAAATATCCTACAAACTAATACAACTGTTGTTCATTTAGCTGGAATCTCAAGAGCTTATAGAGTGGGATCTTTGGTATAACTGGGATTCTAAGTCTTAGCTTGTAACCTTCGCCTAACTTTCTCTTTTCAAAAAAAAAAAATAATTTCTCTCCTCAAGGTCTTTTTGACACTTTCCTCTTCTTCATGTATTGTCTGTGCCCTCTTACTATCTATCAACATGTGTTCTTCTCTCCTTCTTCTTCATTTTTCTACCGCCACCACCGCCGTTGCGTTCTTCCTCTTCTTCTTGCTAACCAAACCCCTACATAACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTCAAGAGATAATTAGCGTTAC</pcr_primer_p1>
		<pcr_primer_p2>CTTCGAGACTCCAGATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>511</pcr_amplicon_size>
		<canonical_amplicon>GGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAG</canonical_amplicon>
		<polymorphic_amplicon>GGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTAYCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25122</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>723489</contig_pos>
        <strand></strand>
        <context>tttatcaatt[A/G]acaaggttca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGTCAATTAGCGAAATGTTTATCATAATATTACCTATATTTTATCAATT</left_flank>
        <right_flank>ACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAAT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATACAAAAAATTGTCAACTATGAAAATGTAGATCTCAAAATTTAGTACATATCACTACTTGACTACTATTTGTTACCTAAATTGGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAGTATATTCTGATCCAAATGTTAAGCATGATATCTACATTTCGTTTAGTAGCATTGTATATTGTTGGAAAGCTTATAAAATATCCTACAAACTAATACAACTGTTGTTCATTTAGCTGGAATCTCAAGAGCTTATAGAGTGGGATCTTTGGTATAACTGGGATTCTAAGTCTTAGCTTGTAACCTTCGCCTAACTTTCTCTTTTCAAAAAAAAAAAATAATTTCTCTCCTCAAGGTCTTTTTGACACTTTCCTCTTCTTCATGTATTGTCTGTGCCCTCTTACTATCTATCAACATGTGTTCTTCTCTCCTTCTTCTTCATTTTTCTACCGCCACCACCGCCGTTGCGTTCTTCCTCTTCTTCTTGCTAACCAAACCCCTACATAACACAACCTTTCCTCCTCGAC</canonical>
            <polymorphic>ATATACAAAAAATTGTCAACTATGAAAATGTAGATCTCAAAATTTAGTACATATCACTACTTGACTACTATTTGTTACCTAAATTGGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTACCTATATTTTATCAATTRACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAGTATATTCTGATCCAAATGTTAAGCATGATATCTACATTTCGTTTAGTAGCATTGTATATTGTTGGAAAGCTTATAAAATATCCTACAAACTAATACAACTGTTGTTCATTTAGCTGGAATCTCAAGAGCTTATAGAGTGGGATCTTTGGTATAACTGGGATTCTAAGTCTTAGCTTGTAACCTTCGCCTAACTTTCTCTTTTCAAAAAAAAAAAATAATTTCTCTCCTCAAGGTCTTTTTGACACTTTCCTCTTCTTCATGTATTGTCTGTGCCCTCTTACTATCTATCAACATGTGTTCTTCTCTCCTTCTTCTTCATTTTTCTACCGCCACCACCGCCGTTGCGTTCTTCCTCTTCTTCTTGCTAACCAAACCCCTACATAACACAACCTTTCCTCCTCGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>385 257 241 65 52</canonical_bands>
                <polymorphic_bands>385 306 257 52</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTCAAGAGATAATTAGCGTTAC</pcr_primer_p1>
		<pcr_primer_p2>CTTCGAGACTCCAGATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>511</pcr_amplicon_size>
		<canonical_amplicon>GGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTACCTATATTTTATCAATTAACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAG</canonical_amplicon>
		<polymorphic_amplicon>GGTTCAAGAGATAATTAGCGTTACTCGGCTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGAAGGGTTCGGCTTTTGGACGGATCTTGGTCAGATTTTGGTCAGAAGTCCCACTGGCAGTAGTGGGACGGACATTGGTCGGATTATGGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGGAAGCTGGCCGGCAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAACCTGACCAAGCTCCGGTCAGAAGTAACCGACGACGCCTGAGTAGTTTCTGTTACCCCATCCTCCCCCCTCTAGCTTGCAACTTTGAGCTCTTTTATCTCGATTACTGTAGTAGATATCAAAAAGCAGTCAATTAGCGAAATGTTTATCATAATATTACCTATATTTTATCAATTRACAAGGTTCAGATATTTTTTACAGGAACCGAGATATATGGGCTCAAAAATTGAGCCTCAAAGTTAACTGGTTTTTTTCAAATCTGGAGTCTCGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25123</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>728558</contig_pos>
        <strand>+</strand>
        <context>CATAATGTAC[G/T]AAAAAGCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGTCTGAAAATGTTTTTAATAGATTGGAAATAGAACTTTACATAATGTAC</left_flank>
        <right_flank>AAAAAGCAAAAAGGTTAAAAAAAGCTTCTTCCGTTGCGGGGAATCGAACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCCAGTGCTACCCTCCCGACTCATGGTACATGACCGACTTGGACCACCTGACCCATCGTGTGCTTCGACGCCTTCAGGACTTGTCGCCTCTGCGTCAGACGCTTGAAGAAGAGGAAGGAGAGGCAGAAGCAGCTGGAAGTTCCGGAATCGATTGGACCCTTTGCCCAGATAAACAGGTTGAGGAGATCTCCTCAAGTACTGCCGATTAATTTAAATTATCTTTTTCTTCTTCAATTTTTTTTTGTATGTAAAATTGTGTCCCCACTCGACGTGATGATATCCCAGTTTTTTTTATTTGTTTCTTATCTTAACTACAGTATTCTGCCAAACATTTTGTTTCACTTCTAGACTTTAGACAATTTTGGTTGTGCCAATAAATGCTCTGCAATTGTGCTCAAATTCATTTTAGACCCCTTTTACAAAAACTTAGTCCAGAGCCATGCTGGACGTCTGAAAATGTTTTTAATAGATTGGAAATAGAACTTTACATAATGTACAAAAAAGCAAAAAGGTTAAAAAAAGCTTCTTCCGTTGCGGGGAATCGAACCCCGGCCTTATGGGTGAGATCACTCGGTGGAAAATCATCGGATAGCATTGAAAAATAGCTGGGTAAATAGGAAATTTAATCTTGCGTTGGATAAACTCGGCTGCGGCTGTCGTCTTTTGGGCGAAAGTTAAGGCTTTGCCGTCTTTTGAGCGAACTATGAGCACCTTTTGGGCGAATTGTTCGATTTTATAAGCGTTCGAATTCGTCGTACCCCCGCGTAATCTGGCCAAACAACGCCCAATAGATGGCCAACCTTTGCCCAAAAGACGACAGCCGCAGCCGAGAAGTGTAGAAATTCTGAAATACTATAATTTTAAGATTAGAGAAATCGATTTGTTTAATTTTATGCCTTTATGCCGCGTTCTAAGTAGACTCCAGGAACTGGAAATTGCGTCCAAAGCTGCCAATTTTTCCAGACAGCATTGAAATGTAGCTTGATAGATAGGAAATT</canonical>
            <polymorphic>TTTCCAGTGCTACCCTCCCGACTCATGGTACATGACCGACTTGGACCACCTGACCCATCGTGTGCTTCGACGCCTTCAGGACTTGTCGCCTCTGCGTCAGACGCTTGAAGAAGAGGAAGGAGAGGCAGAAGCAGCTGGAAGTTCCGGAATCGATTGGACCCTTTGCCCAGATAAACAGGTTGAGGAGATCTCCTCAAGTACTGCCGATTAATTTAAATTATCTTTTTCTTCTTCAATTTTTTTTTGTATGTAAAATTGTGTCCCCACTCGACGTGATGATATCCCAGTTTTTTTTATTTGTTTCTTATCTTAACTACAGTATTCTGCCAAACATTTTGTTTCACTTCTAGACTTTAGACAATTTTGGTTGTGCCAATAAATGCTCTGCAATTGTGCTCAAATTCATTTTAGACCCCTTTTACAAAAACTTAGTCCAGAGCCATGCTGGACGTCTGAAAATGTTTTTAATAGATTGGAAATAGAACTTTACATAATGTACKAAAAAGCAAAAAGGTTAAAAAAAGCTTCTTCCGTTGCGGGGAATCGAACCCCGGCCTTATGGGTGAGATCACTCGGTGGAAAATCATCGGATAGCATTGAAAAATAGCTGGGTAAATAGGAAATTTAATCTTGCGTTGGATAAACTCGGCTGCGGCTGTCGTCTTTTGGGCGAAAGTTAAGGCTTTGCCGTCTTTTGAGCGAACTATGAGCACCTTTTGGGCGAATTGTTCGATTTTATAAGCGTTCGAATTCGTCGTACCCCCGCGTAATCTGGCCAAACAACGCCCAATAGATGGCCAACCTTTGCCCAAAAGACGACAGCCGCAGCCGAGAAGTGTAGAAATTCTGAAATACTATAATTTTAAGATTAGAGAAATCGATTTGTTTAATTTTATGCCTTTATGCCGCGTTCTAAGTAGACTCCAGGAACTGGAAATTGCGTCCAAAGCTGCCAATTTTTCCAGACAGCATTGAAATGTAGCTTGATAGATAGGAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGTACA</site>
                <isoschizomers>
                    <enzyme>AauI</enzyme>
                    <enzyme>Bsp1407I</enzyme>
                    <enzyme>BsrGI</enzyme>
                    <enzyme>SspBI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>505 298 197</canonical_bands>
                <polymorphic_bands>803 197</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAAATGCTCTGCAATTGTG</pcr_primer_p1>
		<pcr_primer_p2>TTTCCTATTTACCCAGCTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATAAATGCTCTGCAATTGTGCTCAAATTCATTTTAGACCCCTTTTACAAAAACTTAGTCCAGAGCCATGCTGGACGTCTGAAAATGTTTTTAATAGATTGGAAATAGAACTTTACATAATGTACAAAAAAGCAAAAAGGTTAAAAAAAGCTTCTTCCGTTGCGGGGAATCGAACCCCGGCCTTATGGGTGAGATCACTCGGTGGAAAATCATCGGATAGCATTGAAAAATAGCTGGGTAAATAGGAAA</canonical_amplicon>
		<polymorphic_amplicon>AATAAATGCTCTGCAATTGTGCTCAAATTCATTTTAGACCCCTTTTACAAAAACTTAGTCCAGAGCCATGCTGGACGTCTGAAAATGTTTTTAATAGATTGGAAATAGAACTTTACATAATGTACKAAAAAGCAAAAAGGTTAAAAAAAGCTTCTTCCGTTGCGGGGAATCGAACCCCGGCCTTATGGGTGAGATCACTCGGTGGAAAATCATCGGATAGCATTGAAAAATAGCTGGGTAAATAGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25124</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>732753</contig_pos>
        <strand>-</strand>
        <context>ATTTACCCAG[A/G]TATTTTTCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAG</left_flank>
        <right_flank>TATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCATAAACTCGAGTTCAAGTTTTATTATGATTGGTACCATTTGTATCAAATGGAAATTGTACATGGAATATACGAAATTCGGAGGCATGCAGACAATCAGAAAGCCATTCTTTCTATTGAATCTGTTGAAAGCCGTTTTTTTTTGGAATTTCTATGTGGTTTAAGGTAATTTCCAGAGCCTTACGATTGTTTTAAGGTAATTCATAGTTAATTCATAGTTAGTTCAATGTAAAGCAAGCAATATTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTC</canonical>
            <polymorphic>ATCATAAACTCGAGTTCAAGTTTTATTATGATTGGTACCATTTGTATCAAATGGAAATTGTACATGGAATATACGAAATTCGGAGGCATGCAGACAATCAGAAAGCCATTCTTTCTATTGAATCTGTTGAAAGCCGTTTTTTTTTGGAATTTCTATGTGGTTTAAGGTAATTTCCAGAGCCTTACGATTGTTTTAAGGTAATTCATAGTTAATTCATAGTTAGTTCAATGTAAAGCAAGCAATATTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGRTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>337 244 228 162 29</canonical_bands>
                <polymorphic_bands>406 337 228 29</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>228 158 157 105 92 70 46 42 30 29 28 15</canonical_bands>
                <polymorphic_bands>228 158 157 112 105 92 46 30 29 28 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAATTTCCACACTTTATC</pcr_primer_p1>
		<pcr_primer_p2>CATAAATCCTAACCACTAGACCA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGRTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25125</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>732865</contig_pos>
        <strand>-</strand>
        <context>TACTCTCTCG[C/T]ACCRTCCACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCG</left_flank>
        <right_flank>ACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTATTGAATCTGTTGAAAGCCGTTTTTTTTTGGAATTTCTATGTGGTTTAAGGTAATTTCCAGAGCCTTACGATTGTTTTAAGGTAATTCATAGTTAATTCATAGTTAGTTCAATGTAAAGCAAGCAATATTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTCTAGAATTGTTTTTCGTTGAAAAAAAAAATGTTCTGCAACAATTCTTCCAATTTTTGGATTAGCGAAAACTTTGAAAATTATAATCCATTAATTTCGGATTTGTTTGGAATTA</canonical>
            <polymorphic>TTCTATTGAATCTGTTGAAAGCCGTTTTTTTTTGGAATTTCTATGTGGTTTAAGGTAATTTCCAGAGCCTTACGATTGTTTTAAGGTAATTCATAGTTAATTCATAGTTAGTTCAATGTAAAGCAAGCAATATTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGYACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTCTAGAATTGTTTTTCGTTGAAAAAAAAAATGTTCTGCAACAATTCTTCCAATTTTTGGATTAGCGAAAACTTTGAAAATTATAATCCATTAATTTCGGATTTGTTTGGAATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>300 168 129 69 50 47 46 36 31 20 17 15 12 12 12 11 8 7 6 2 2</canonical_bands>
                <polymorphic_bands>300 168 129 69 57 47 46 36 31 20 17 15 12 12 12 11 8 6 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAATTTCCACACTTTATC</pcr_primer_p1>
		<pcr_primer_p2>CATAAATCCTAACCACTAGACCA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGYACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25126</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>732869</contig_pos>
        <strand>-</strand>
        <context>CTCTCGYACC[A/G]TCCACTTTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACC</left_flank>
        <right_flank>TCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGAATCTGTTGAAAGCCGTTTTTTTTTGGAATTTCTATGTGGTTTAAGGTAATTTCCAGAGCCTTACGATTGTTTTAAGGTAATTCATAGTTAATTCATAGTTAGTTCAATGTAAAGCAAGCAATATTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTCTAGAATTGTTTTTCGTTGAAAAAAAAAATGTTCTGCAACAATTCTTCCAATTTTTGGATTAGCGAAAACTTTGAAAATTATAATCCATTAATTTCGGATTTGTTTGGAATTAAAAA</canonical>
            <polymorphic>ATTGAATCTGTTGAAAGCCGTTTTTTTTTGGAATTTCTATGTGGTTTAAGGTAATTTCCAGAGCCTTACGATTGTTTTAAGGTAATTCATAGTTAATTCATAGTTAGTTCAATGTAAAGCAAGCAATATTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCRTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTCTAGAATTGTTTTTCGTTGAAAAAAAAAATGTTCTGCAACAATTCTTCCAATTTTTGGATTAGCGAAAACTTTGAAAATTATAATCCATTAATTTCGGATTTGTTTGGAATTAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAATTTCCACACTTTATC</pcr_primer_p1>
		<pcr_primer_p2>CATAAATCCTAACCACTAGACCA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCRTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25127</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>732886</contig_pos>
        <strand>-</strand>
        <context>TTCCCCCTCA[A/T]ATRTGTACGC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCA</left_flank>
        <right_flank>ATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGTTTTTTTTTGGAATTTCTATGTGGTTTAAGGTAATTTCCAGAGCCTTACGATTGTTTTAAGGTAATTCATAGTTAATTCATAGTTAGTTCAATGTAAAGCAAGCAATATTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTCTAGAATTGTTTTTCGTTGAAAAAAAAAATGTTCTGCAACAATTCTTCCAATTTTTGGATTAGCGAAAACTTTGAAAATTATAATCCATTAATTTCGGATTTGTTTGGAATTAAAAAAGTTTTTAGGTCCGCGG</canonical>
            <polymorphic>CCGTTTTTTTTTGGAATTTCTATGTGGTTTAAGGTAATTTCCAGAGCCTTACGATTGTTTTAAGGTAATTCATAGTTAATTCATAGTTAGTTCAATGTAAAGCAAGCAATATTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCAWATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTCTAGAATTGTTTTTCGTTGAAAAAAAAAATGTTCTGCAACAATTCTTCCAATTTTTGGATTAGCGAAAACTTTGAAAATTATAATCCATTAATTTCGGATTTGTTTGGAATTAAAAAAGTTTTTAGGTCCGCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>499 264 237</canonical_bands>
                <polymorphic_bands>763 237</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>300 189 129 69 50 46 36 31 26 20 17 15 12 12 12 11 8 7 6 2 2</canonical_bands>
                <polymorphic_bands>300 189 129 69 50 46 36 31 26 20 18 17 15 12 12 11 8 7 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAATTTCCACACTTTATC</pcr_primer_p1>
		<pcr_primer_p2>CATAAATCCTAACCACTAGACCA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCAWATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25128</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>732889</contig_pos>
        <strand>-</strand>
        <context>CCCCTCAWAT[A/G]TGTACGCCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACAT</left_flank>
        <right_flank>TGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTTTTGGAATTTCTATGTGGTTTAAGGTAATTTCCAGAGCCTTACGATTGTTTTAAGGTAATTCATAGTTAATTCATAGTTAGTTCAATGTAAAGCAAGCAATATTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTCTAGAATTGTTTTTCGTTGAAAAAAAAAATGTTCTGCAACAATTCTTCCAATTTTTGGATTAGCGAAAACTTTGAAAATTATAATCCATTAATTTCGGATTTGTTTGGAATTAAAAAAGTTTTTAGGTCCGCGGTTA</canonical>
            <polymorphic>TTTTTTTTTGGAATTTCTATGTGGTTTAAGGTAATTTCCAGAGCCTTACGATTGTTTTAAGGTAATTCATAGTTAATTCATAGTTAGTTCAATGTAAAGCAAGCAATATTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATRTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTCTAGAATTGTTTTTCGTTGAAAAAAAAAATGTTCTGCAACAATTCTTCCAATTTTTGGATTAGCGAAAACTTTGAAAATTATAATCCATTAATTTCGGATTTGTTTGGAATTAAAAAAGTTTTTAGGTCCGCGGTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>496 264 240</canonical_bands>
                <polymorphic_bands>760 240</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>300 192 129 69 50 46 36 31 23 20 17 15 12 12 12 11 8 7 6 2 2</canonical_bands>
                <polymorphic_bands>300 192 129 69 50 46 36 31 23 20 17 17 15 12 12 12 8 7 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAATTTCCACACTTTATC</pcr_primer_p1>
		<pcr_primer_p2>CATAAATCCTAACCACTAGACCA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATRTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25129</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>732901</contig_pos>
        <strand>-</strand>
        <context>GTACGCCCTC[A/G]ACTCCCCTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTC</left_flank>
        <right_flank>ACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCTATGTGGTTTAAGGTAATTTCCAGAGCCTTACGATTGTTTTAAGGTAATTCATAGTTAATTCATAGTTAGTTCAATGTAAAGCAAGCAATATTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTCTAGAATTGTTTTTCGTTGAAAAAAAAAATGTTCTGCAACAATTCTTCCAATTTTTGGATTAGCGAAAACTTTGAAAATTATAATCCATTAATTTCGGATTTGTTTGGAATTAAAAAAGTTTTTAGGTCCGCGGTTATTCTTAACTTTT</canonical>
            <polymorphic>ATTTCTATGTGGTTTAAGGTAATTTCCAGAGCCTTACGATTGTTTTAAGGTAATTCATAGTTAATTCATAGTTAGTTCAATGTAAAGCAAGCAATATTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCRACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTCTAGAATTGTTTTTCGTTGAAAAAAAAAATGTTCTGCAACAATTCTTCCAATTTTTGGATTAGCGAAAACTTTGAAAATTATAATCCATTAATTTCGGATTTGTTTGGAATTAAAAAAGTTTTTAGGTCCGCGGTTATTCTTAACTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>300 204 129 69 50 46 36 31 20 17 15 12 12 12 11 11 8 7 6 2 2</canonical_bands>
                <polymorphic_bands>300 204 129 69 50 46 36 31 26 20 17 12 12 12 11 8 7 6 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTCCACACTTTATCCAATG</pcr_primer_p1>
		<pcr_primer_p2>GAGCCATAAATCCTAACCACTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTC</canonical_amplicon>
		<polymorphic_amplicon>AATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCRACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25130</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>732997</contig_pos>
        <strand>-</strand>
        <context>ACGGAAGAAG[G/T]TTTTTTACCC</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAG</left_flank>
        <right_flank>TTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTCTAGAATTGTTTTTCGTTGAAAAAAAAAATGTTCTGCAACAATTCTTCCAATTTTTGGATTAGCGAAAACTTTGAAAATTATAATCCATTAATTTCGGATTTGTTTGGAATTAAAAAAGTTTTTAGGTCCGCGGTTATTCTTAACTTTTCGATAATCCTAAGTTCCTTGATTTTGTATGTATTCATGATAATTCGGAATGTAAAAAATCAAAAAATCAATTATCGATTTTCCTATTTCCGGCTGT</canonical>
            <polymorphic>TTAACTTCAAATGCATTTTCAGAGTCAAAAACCCCGACCAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGKTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTCTAGAATTGTTTTTCGTTGAAAAAAAAAATGTTCTGCAACAATTCTTCCAATTTTTGGATTAGCGAAAACTTTGAAAATTATAATCCATTAATTTCGGATTTGTTTGGAATTAAAAAAGTTTTTAGGTCCGCGGTTATTCTTAACTTTTCGATAATCCTAAGTTCCTTGATTTTGTATGTATTCATGATAATTCGGAATGTAAAAAATCAAAAAATCAATTATCGATTTTCCTATTTCCGGCTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>273 244 228 162 93</canonical_bands>
                <polymorphic_bands>472 273 162 93</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>269 228 157 93 92 70 42 30 15 4</canonical_bands>
                <polymorphic_bands>269 258 157 93 92 70 42 15 4</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGGTCTAGTGGTTAGGATTTA</pcr_primer_p1>
		<pcr_primer_p2>CGTGTCTCTAAGAAAAATGTGAT</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>TGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACG</canonical_amplicon>
		<polymorphic_amplicon>TGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGKTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25131</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>733035</contig_pos>
        <strand>-</strand>
        <context>ATTATGTAAA[C/T]TTCWATTTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAA</left_flank>
        <right_flank>TTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTCTAGAATTGTTTTTCGTTGAAAAAAAAAATGTTCTGCAACAATTCTTCCAATTTTTGGATTAGCGAAAACTTTGAAAATTATAATCCATTAATTTCGGATTTGTTTGGAATTAAAAAAGTTTTTAGGTCCGCGGTTATTCTTAACTTTTCGATAATCCTAAGTTCCTTGATTTTGTATGTATTCATGATAATTCGGAATGTAAAAAATCAAAAAATCAATTATCGATTTTCCTATTTCCGGCTGTTCCATGTCAATTTCTTTTTTATGGCCCTCTATATTCTT</canonical>
            <polymorphic>CAACAAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAYTTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTCTAGAATTGTTTTTCGTTGAAAAAAAAAATGTTCTGCAACAATTCTTCCAATTTTTGGATTAGCGAAAACTTTGAAAATTATAATCCATTAATTTCGGATTTGTTTGGAATTAAAAAAGTTTTTAGGTCCGCGGTTATTCTTAACTTTTCGATAATCCTAAGTTCCTTGATTTTGTATGTATTCATGATAATTCGGAATGTAAAAAATCAAAAAATCAATTATCGATTTTCCTATTTCCGGCTGTTCCATGTCAATTTCTTTTTTATGGCCCTCTATATTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>306 304 169 127 69 25</canonical_bands>
                <polymorphic_bands>373 306 169 127 25</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>299 127 122 81 64 36 36 31 30 28 27 27 25 18 16 14 9 5 5</canonical_bands>
                <polymorphic_bands>304 127 122 81 64 36 36 31 30 28 27 27 25 18 16 14 9 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGGTCTAGTGGTTAGGATTTA</pcr_primer_p1>
		<pcr_primer_p2>CGTGTCTCTAAGAAAAATGTGAT</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>TGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACG</canonical_amplicon>
		<polymorphic_amplicon>TGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAYTTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25132</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>733039</contig_pos>
        <strand>-</strand>
        <context>TGTAAAYTTC[A/T]ATTTCCAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTC</left_flank>
        <right_flank>ATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTCTAGAATTGTTTTTCGTTGAAAAAAAAAATGTTCTGCAACAATTCTTCCAATTTTTGGATTAGCGAAAACTTTGAAAATTATAATCCATTAATTTCGGATTTGTTTGGAATTAAAAAAGTTTTTAGGTCCGCGGTTATTCTTAACTTTTCGATAATCCTAAGTTCCTTGATTTTGTATGTATTCATGATAATTCGGAATGTAAAAAATCAAAAAATCAATTATCGATTTTCCTATTTCCGGCTGTTCCATGTCAATTTCTTTTTTATGGCCCTCTATATTCTTTGTG</canonical>
            <polymorphic>AAGAATCGCTATATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCWATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTCTAGAATTGTTTTTCGTTGAAAAAAAAAATGTTCTGCAACAATTCTTCCAATTTTTGGATTAGCGAAAACTTTGAAAATTATAATCCATTAATTTCGGATTTGTTTGGAATTAAAAAAGTTTTTAGGTCCGCGGTTATTCTTAACTTTTCGATAATCCTAAGTTCCTTGATTTTGTATGTATTCATGATAATTCGGAATGTAAAAAATCAAAAAATCAATTATCGATTTTCCTATTTCCGGCTGTTCCATGTCAATTTCTTTTTTATGGCCCTCTATATTCTTTGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>299 127 122 81 64 36 36 34 28 27 27 27 25 18 16 14 9 5 5</canonical_bands>
                <polymorphic_bands>299 127 122 81 69 36 36 34 28 27 27 27 25 18 16 14 9 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGGTCTAGTGGTTAGGATTTA</pcr_primer_p1>
		<pcr_primer_p2>CGTGTCTCTAAGAAAAATGTGAT</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>TGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACG</canonical_amplicon>
		<polymorphic_amplicon>TGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCWATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25133</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>733050</contig_pos>
        <strand>-</strand>
        <context>ATTTCCAATC[A/C]ATTGAGCATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATC</left_flank>
        <right_flank>ATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTCTAGAATTGTTTTTCGTTGAAAAAAAAAATGTTCTGCAACAATTCTTCCAATTTTTGGATTAGCGAAAACTTTGAAAATTATAATCCATTAATTTCGGATTTGTTTGGAATTAAAAAAGTTTTTAGGTCCGCGGTTATTCTTAACTTTTCGATAATCCTAAGTTCCTTGATTTTGTATGTATTCATGATAATTCGGAATGTAAAAAATCAAAAAATCAATTATCGATTTTCCTATTTCCGGCTGTTCCATGTCAATTTCTTTTTTATGGCCCTCTATATTCTTTGTGGAATTTTTCTA</canonical>
            <polymorphic>TATTTTATCAAATATCAATTTCATTTTGCTATCTATCAAGCTATCTGCCAATGTTTTCCAATGATCTTGACTCGAGTTACAGTTAAATCAATGTCAAAAATATGGTAAATACAAAGATGCGTATTCATCTAGCCTTAAAATTATGATATTTCAGAATTTCCACACTTTATCCAATGTAAAATTCAATTTCCTATTTACCCAGCTATTTTTCAATGTTCTCCGATGATTTTCCACCGAGTTATAGCCTTCTCTTTATATCAGTCACACTTTATCATTAACTTCCCCTCTGCCCCTCCTCCTTCTCTACTCTCTCGCACCCTCCACTTTCCCCCTCACATGTGTACGCCCTCCACTCCCCTCTTCCCCACGCTCCGTTGTGGTCTAGTGGTTAGGATTTATGGCTCTCACCCATAAGGCCGGGGTTCGATTCCCCGCAACGGAAGAAGCTTTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCMATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAAACTTCTAGAATTGTTTTTCGTTGAAAAAAAAAATGTTCTGCAACAATTCTTCCAATTTTTGGATTAGCGAAAACTTTGAAAATTATAATCCATTAATTTCGGATTTGTTTGGAATTAAAAAAGTTTTTAGGTCCGCGGTTATTCTTAACTTTTCGATAATCCTAAGTTCCTTGATTTTGTATGTATTCATGATAATTCGGAATGTAAAAAATCAAAAAATCAATTATCGATTTTCCTATTTCCGGCTGTTCCATGTCAATTTCTTTTTTATGGCCCTCTATATTCTTTGTGGAATTTTTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>498 427 75</canonical_bands>
                <polymorphic_bands>925 75</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>352 195 158 74 74 74 73</canonical_bands>
                <polymorphic_bands>352 232 195 74 74 73</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTACCCTTTTTGCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCTAACTTCAAACAAATTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCGATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTACCCTTTTTGCTTTTTTGTACATTATGTAAAATTCAATTTCCAATCMATTGAGCATATTTTAAAGTTGTATTTTAACTCCGCACCTTGTTATGTATATGAATTTTAAGTTCCTGTCCTTCAGACGATCACATTTTTCTTAGAGACACGCGTTGCGGTCGCGTCGCGATTGAACTTGAAAACACCTGCTTTTGTGGGTAAAAATCGAAAAAAAATGAGACAGCTGAAAATTTGTTTGAAGTTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25134</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>770472</contig_pos>
        <strand></strand>
        <context>catttcagtt[A/G]gctcaagtag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGTGCAATATTTTAAGCTTCACAACTTTCTAGTTGACACATTTCAGTT</left_flank>
        <right_flank>GCTCAAGTAGTTGTGGAAATATGCGCCTTTAAAGTTGGCCTCCCTTCTCC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCGCTCATCCATTGTCCCATAATTGGACGGACGCCTTCTGGAGTGTGGCAGACCGAGTCGTACTTGTCCTTGGTCACCATCCATGTCTTCGATTCGACACGAGCGACGTCGCGTGGGTCAGTGCGGCAGAGATAGCTGGAAAATTCAAGAGTTTGAGGATATCAAAGTTTGAAGCTTGAAAAATCTAGCTAAACATTATTGGGACGGTTTGAAATTATCAGATCTAGTGAACAAAATGCGAGCTTCATTTTTGTAGTTGACAACTTTTTTATAGCTAGCTTGGTTTTTGAGATATGCGCTTTTCTAGTAAGCGTCCACAATTAGCAGGCCACGCTCTCGTCGCATGTGCCCCCTGTTTGCTTTAGCAGTCCCCAATTCCAGGCGCCACAACTTCAAAGGCGCATATCTCAAAAACCAAGATAGCTATGAAAAAGTTGAAAACTAGAAAAATGTGCAATATTTTAAGCTTCACAACTTTCTAGTTGACACATTTCAGTTAGCTCAAGTAGTTGTGGAAATATGCGCCTTTAAAGTTGGCCTCCCTTCTCCCCTACGCCGCCGCCGCCGCCGGTGGGAGTCGCCTAACTTTAAAGGCGCATATCTCAAAAACCGTAAAAGCTAGGAAAAAGTTGTCAACTAGAAAAATGAAGCTCTATTTCTGTTTTATATTATTTGAGAATTTCAGACAATTCCTTTAAACTTTGAACCTATTTTATCAAGTCCCAAAGTTTCAATTTCAAGCTAGAGTCAAGATTTTCGACCCCTTGGTCCGCAGAGATCATTTTTCCTGCAGCCTATCTTCAAAAATCATAGCCCAAAGTGACAAACAACGTTGATTTCTTGGCCCCCTGCAGAAAAAAAATCAACCCAAAAATATCAGAAACATTTTTTTTTGTTGTTTCTTTCCCATCACATAGATCTCTCTTCTCACTACGTGAAGAATGGCAAGATTGATGAGAGAAAAGAGGTAAACAAGAGATAAATGATAAACTGATAGTG</canonical>
            <polymorphic>CTCGCTCATCCATTGTCCCATAATTGGACGGACGCCTTCTGGAGTGTGGCAGACCGAGTCGTACTTGTCCTTGGTCACCATCCATGTCTTCGATTCGACACGAGCGACGTCGCGTGGGTCAGTGCGGCAGAGATAGCTGGAAAATTCAAGAGTTTGAGGATATCAAAGTTTGAAGCTTGAAAAATCTAGCTAAACATTATTGGGACGGTTTGAAATTATCAGATCTAGTGAACAAAATGCGAGCTTCATTTTTGTAGTTGACAACTTTTTTATAGCTAGCTTGGTTTTTGAGATATGCGCTTTTCTAGTAAGCGTCCACAATTAGCAGGCCACGCTCTCGTCGCATGTGCCCCCTGTTTGCTTTAGCAGTCCCCAATTCCAGGCGCCACAACTTCAAAGGCGCATATCTCAAAAACCAAGATAGCTATGAAAAAGTTGAAAACTAGAAAAATGTGCAATATTTTAAGCTTCACAACTTTCTAGTTGACACATTTCAGTTRGCTCAAGTAGTTGTGGAAATATGCGCCTTTAAAGTTGGCCTCCCTTCTCCCCTACGCCGCCGCCGCCGCCGGTGGGAGTCGCCTAACTTTAAAGGCGCATATCTCAAAAACCGTAAAAGCTAGGAAAAAGTTGTCAACTAGAAAAATGAAGCTCTATTTCTGTTTTATATTATTTGAGAATTTCAGACAATTCCTTTAAACTTTGAACCTATTTTATCAAGTCCCAAAGTTTCAATTTCAAGCTAGAGTCAAGATTTTCGACCCCTTGGTCCGCAGAGATCATTTTTCCTGCAGCCTATCTTCAAAAATCATAGCCCAAAGTGACAAACAACGTTGATTTCTTGGCCCCCTGCAGAAAAAAAATCAACCCAAAAATATCAGAAACATTTTTTTTTGTTGTTTCTTTCCCATCACATAGATCTCTCTTCTCACTACGTGAAGAATGGCAAGATTGATGAGAGAAAAGAGGTAAACAAGAGATAAATGATAAACTGATAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>258 145 136 118 91 54 43 39 34 32 32 14 4</canonical_bands>
                <polymorphic_bands>258 152 145 136 91 54 43 39 32 32 14 4</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>155 136 95 91 81 54 52 50 43 39 37 34 32 32 31 20 14 4</canonical_bands>
                <polymorphic_bands>155 136 95 91 81 71 54 52 50 43 39 32 32 31 20 14 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTCAAGAGTTTGAGGATA</pcr_primer_p1>
		<pcr_primer_p2>AAACTTTGGGACTTGATAAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>593</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTCAAGAGTTTGAGGATATCAAAGTTTGAAGCTTGAAAAATCTAGCTAAACATTATTGGGACGGTTTGAAATTATCAGATCTAGTGAACAAAATGCGAGCTTCATTTTTGTAGTTGACAACTTTTTTATAGCTAGCTTGGTTTTTGAGATATGCGCTTTTCTAGTAAGCGTCCACAATTAGCAGGCCACGCTCTCGTCGCATGTGCCCCCTGTTTGCTTTAGCAGTCCCCAATTCCAGGCGCCACAACTTCAAAGGCGCATATCTCAAAAACCAAGATAGCTATGAAAAAGTTGAAAACTAGAAAAATGTGCAATATTTTAAGCTTCACAACTTTCTAGTTGACACATTTCAGTTAGCTCAAGTAGTTGTGGAAATATGCGCCTTTAAAGTTGGCCTCCCTTCTCCCCTACGCCGCCGCCGCCGCCGGTGGGAGTCGCCTAACTTTAAAGGCGCATATCTCAAAAACCGTAAAAGCTAGGAAAAAGTTGTCAACTAGAAAAATGAAGCTCTATTTCTGTTTTATATTATTTGAGAATTTCAGACAATTCCTTTAAACTTTGAACCTATTTTATCAAGTCCCAAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTCAAGAGTTTGAGGATATCAAAGTTTGAAGCTTGAAAAATCTAGCTAAACATTATTGGGACGGTTTGAAATTATCAGATCTAGTGAACAAAATGCGAGCTTCATTTTTGTAGTTGACAACTTTTTTATAGCTAGCTTGGTTTTTGAGATATGCGCTTTTCTAGTAAGCGTCCACAATTAGCAGGCCACGCTCTCGTCGCATGTGCCCCCTGTTTGCTTTAGCAGTCCCCAATTCCAGGCGCCACAACTTCAAAGGCGCATATCTCAAAAACCAAGATAGCTATGAAAAAGTTGAAAACTAGAAAAATGTGCAATATTTTAAGCTTCACAACTTTCTAGTTGACACATTTCAGTTRGCTCAAGTAGTTGTGGAAATATGCGCCTTTAAAGTTGGCCTCCCTTCTCCCCTACGCCGCCGCCGCCGCCGGTGGGAGTCGCCTAACTTTAAAGGCGCATATCTCAAAAACCGTAAAAGCTAGGAAAAAGTTGTCAACTAGAAAAATGAAGCTCTATTTCTGTTTTATATTATTTGAGAATTTCAGACAATTCCTTTAAACTTTGAACCTATTTTATCAAGTCCCAAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25135</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>770567</contig_pos>
        <strand></strand>
        <context>aactttaaag[G/C]cgcatatctc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TTCTCCCCTACGCCGCCGCCGCCGCCGGTGGGAGTCGCCTAACTTTAAAG</left_flank>
        <right_flank>CGCATATCTCAAAAACCGTAAAAGCTAGGAAAAAGTTGTCAACTAGAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGACACGAGCGACGTCGCGTGGGTCAGTGCGGCAGAGATAGCTGGAAAATTCAAGAGTTTGAGGATATCAAAGTTTGAAGCTTGAAAAATCTAGCTAAACATTATTGGGACGGTTTGAAATTATCAGATCTAGTGAACAAAATGCGAGCTTCATTTTTGTAGTTGACAACTTTTTTATAGCTAGCTTGGTTTTTGAGATATGCGCTTTTCTAGTAAGCGTCCACAATTAGCAGGCCACGCTCTCGTCGCATGTGCCCCCTGTTTGCTTTAGCAGTCCCCAATTCCAGGCGCCACAACTTCAAAGGCGCATATCTCAAAAACCAAGATAGCTATGAAAAAGTTGAAAACTAGAAAAATGTGCAATATTTTAAGCTTCACAACTTTCTAGTTGACACATTTCAGTTAGCTCAAGTAGTTGTGGAAATATGCGCCTTTAAAGTTGGCCTCCCTTCTCCCCTACGCCGCCGCCGCCGCCGGTGGGAGTCGCCTAACTTTAAAGGCGCATATCTCAAAAACCGTAAAAGCTAGGAAAAAGTTGTCAACTAGAAAAATGAAGCTCTATTTCTGTTTTATATTATTTGAGAATTTCAGACAATTCCTTTAAACTTTGAACCTATTTTATCAAGTCCCAAAGTTTCAATTTCAAGCTAGAGTCAAGATTTTCGACCCCTTGGTCCGCAGAGATCATTTTTCCTGCAGCCTATCTTCAAAAATCATAGCCCAAAGTGACAAACAACGTTGATTTCTTGGCCCCCTGCAGAAAAAAAATCAACCCAAAAATATCAGAAACATTTTTTTTTGTTGTTTCTTTCCCATCACATAGATCTCTCTTCTCACTACGTGAAGAATGGCAAGATTGATGAGAGAAAAGAGGTAAACAAGAGATAAATGATAAACTGATAGTGTAGGTGATCGGCAGAGGGCAGATCAAATGATCGGGAGAGTGCAAAGTATGCGTTTTGGACTTTGAGAGTGGTCAGAAAAACTTTGACGCCTAAAA</canonical>
            <polymorphic>CGACACGAGCGACGTCGCGTGGGTCAGTGCGGCAGAGATAGCTGGAAAATTCAAGAGTTTGAGGATATCAAAGTTTGAAGCTTGAAAAATCTAGCTAAACATTATTGGGACGGTTTGAAATTATCAGATCTAGTGAACAAAATGCGAGCTTCATTTTTGTAGTTGACAACTTTTTTATAGCTAGCTTGGTTTTTGAGATATGCGCTTTTCTAGTAAGCGTCCACAATTAGCAGGCCACGCTCTCGTCGCATGTGCCCCCTGTTTGCTTTAGCAGTCCCCAATTCCAGGCGCCACAACTTCAAAGGCGCATATCTCAAAAACCAAGATAGCTATGAAAAAGTTGAAAACTAGAAAAATGTGCAATATTTTAAGCTTCACAACTTTCTAGTTGACACATTTCAGTTAGCTCAAGTAGTTGTGGAAATATGCGCCTTTAAAGTTGGCCTCCCTTCTCCCCTACGCCGCCGCCGCCGCCGGTGGGAGTCGCCTAACTTTAAAGSCGCATATCTCAAAAACCGTAAAAGCTAGGAAAAAGTTGTCAACTAGAAAAATGAAGCTCTATTTCTGTTTTATATTATTTGAGAATTTCAGACAATTCCTTTAAACTTTGAACCTATTTTATCAAGTCCCAAAGTTTCAATTTCAAGCTAGAGTCAAGATTTTCGACCCCTTGGTCCGCAGAGATCATTTTTCCTGCAGCCTATCTTCAAAAATCATAGCCCAAAGTGACAAACAACGTTGATTTCTTGGCCCCCTGCAGAAAAAAAATCAACCCAAAAATATCAGAAACATTTTTTTTTGTTGTTTCTTTCCCATCACATAGATCTCTCTTCTCACTACGTGAAGAATGGCAAGATTGATGAGAGAAAAGAGGTAAACAAGAGATAAATGATAAACTGATAGTGTAGGTGATCGGCAGAGGGCAGATCAAATGATCGGGAGAGTGCAAAGTATGCGTTTTGGACTTTGAGAGTGGTCAGAAAAACTTTGACGCCTAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>498 204 123 86 72 17</canonical_bands>
                <polymorphic_bands>570 204 123 86 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTCAAGAGTTTGAGGATA</pcr_primer_p1>
		<pcr_primer_p2>AAACTTTGGGACTTGATAAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>593</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTCAAGAGTTTGAGGATATCAAAGTTTGAAGCTTGAAAAATCTAGCTAAACATTATTGGGACGGTTTGAAATTATCAGATCTAGTGAACAAAATGCGAGCTTCATTTTTGTAGTTGACAACTTTTTTATAGCTAGCTTGGTTTTTGAGATATGCGCTTTTCTAGTAAGCGTCCACAATTAGCAGGCCACGCTCTCGTCGCATGTGCCCCCTGTTTGCTTTAGCAGTCCCCAATTCCAGGCGCCACAACTTCAAAGGCGCATATCTCAAAAACCAAGATAGCTATGAAAAAGTTGAAAACTAGAAAAATGTGCAATATTTTAAGCTTCACAACTTTCTAGTTGACACATTTCAGTTAGCTCAAGTAGTTGTGGAAATATGCGCCTTTAAAGTTGGCCTCCCTTCTCCCCTACGCCGCCGCCGCCGCCGGTGGGAGTCGCCTAACTTTAAAGGCGCATATCTCAAAAACCGTAAAAGCTAGGAAAAAGTTGTCAACTAGAAAAATGAAGCTCTATTTCTGTTTTATATTATTTGAGAATTTCAGACAATTCCTTTAAACTTTGAACCTATTTTATCAAGTCCCAAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTCAAGAGTTTGAGGATATCAAAGTTTGAAGCTTGAAAAATCTAGCTAAACATTATTGGGACGGTTTGAAATTATCAGATCTAGTGAACAAAATGCGAGCTTCATTTTTGTAGTTGACAACTTTTTTATAGCTAGCTTGGTTTTTGAGATATGCGCTTTTCTAGTAAGCGTCCACAATTAGCAGGCCACGCTCTCGTCGCATGTGCCCCCTGTTTGCTTTAGCAGTCCCCAATTCCAGGCGCCACAACTTCAAAGGCGCATATCTCAAAAACCAAGATAGCTATGAAAAAGTTGAAAACTAGAAAAATGTGCAATATTTTAAGCTTCACAACTTTCTAGTTGACACATTTCAGTTAGCTCAAGTAGTTGTGGAAATATGCGCCTTTAAAGTTGGCCTCCCTTCTCCCCTACGCCGCCGCCGCCGCCGGTGGGAGTCGCCTAACTTTAAAGSCGCATATCTCAAAAACCGTAAAAGCTAGGAAAAAGTTGTCAACTAGAAAAATGAAGCTCTATTTCTGTTTTATATTATTTGAGAATTTCAGACAATTCCTTTAAACTTTGAACCTATTTTATCAAGTCCCAAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25136</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>774033</contig_pos>
        <strand>+</strand>
        <context>AATMWTTCTG[C/T]AAAAAAWTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCCCATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAATATTTCTG</left_flank>
        <right_flank>AAAAAATTTCTTAAAAGTTCTAACAATATTCCAAAGATTGGTTAGTATAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACTTTAAAGGCGCATATACTCAAAACTACAGTAGGTAGAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGGCTTGTTTTATGTATTCTGAAATTTCTAGGATCTCAAAGTTGACTTTTTGAGATTTTCCATTTTTTTTCCAGCTTGTTTAATGTCCAGCAGGACTTTAAGGTCATAAATTTAGAATCCAAAAGTAACATAATCTCTTCATATTTAAAGTAATTCAGGCATATTGATAAGATTAACATATCAAAGTTCTCTGAATAAAAAACTTTTTTTTATTTACTCAAATATAGAAATTGCATAGGCACTAGAGTGCAAACTACAAATACTAAAATTTGAAATTTCCAAAAATTTCAAAATATAGGTAGTTCCCTACTAAAAAAAATCCAATTACATATTTATAAAAGCCACTTGGCATAATCCTATGAACTAGTTTTTCTGGAACCCCATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAATATTTCTGAAAAAAATTTCTTAAAAGTTCTAACAATATTCCAAAGATTGGTTAGTATACAAAAATCCCTAGTCAAATTGGAGTTGGCCCCGGACAAAAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAGCAGACCAAAAAATCTGAAAATTTCAGAAATCAGAGAGTGGACTTAGATCTTCATTTTTGTAGTTGACAACTTTTTTCTAGCTACCGTAGTTTTTGAGATATCCGCCTTTAAAGTTAGTTAACCTACTTGGCGCCCCTACCCTCCCTTTCCGCCGCCGCCTGTGAGGGTCGCCAAACTTTCAAAGCGCATACCTCAAAAACGGGAATAGTTTTCAAAAAGGTGTCAACTACAAAAAAGTACAAATTGAAATTTGACACATTTTTGCAATTTACCACTTTTCGCTAGCTACCGTAGTTTTGGAGATACGCGCCTTTGAACTTTGAGCGCGGCAAATACGAGGAGAGGG</canonical>
            <polymorphic>TAACTTTAAAGGCGCATATACTCAAAACTACAGTAGGTAGAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGGCTTGTTTTATGTATTCTGAAATTTCTAGGATCTCAAAGTTGACTTTTTGAGATTTTCCATTTTTTTTCCAGCTTGTTTAATGTCCAGCAGGACTTTAAGGTCATAAATTTAGAATCCAAAAGTAACATAATCTCTTCATATTTAAAGTAATTCAGGCATATTGATAAGATTAACATATCAAAGTTCTCTGAATAAAAAACTTTTTTTTATTTACTCAAATATAGAAATTGCATAGGCACTAGAGTGCAAACTACAAATACTAAAATTTGAAATTTCCAAAAATTTCAAAATATAGGTAGTTCCCTACTAAAAAAAATCCAATTACATATTTATAAAAGCCACTTGGCATAATCCTATGAACTAGTTTTTCTGGAACCCCATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAATATTTCTGYAAAAAATTTCTTAAAAGTTCTAACAATATTCCAAAGATTGGTTAGTATACAAAAATCCCTAGTCAAATTGGAGTTGGCCCCGGACAAAAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAGCAGACCAAAAAATCTGAAAATTTCAGAAATCAGAGAGTGGACTTAGATCTTCATTTTTGTAGTTGACAACTTTTTTCTAGCTACCGTAGTTTTTGAGATATCCGCCTTTAAAGTTAGTTAACCTACTTGGCGCCCCTACCCTCCCTTTCCGCCGCCGCCTGTGAGGGTCGCCAAACTTTCAAAGCGCATACCTCAAAAACGGGAATAGTTTTCAAAAAGGTGTCAACTACAAAAAAGTACAAATTGAAATTTGACACATTTTTGCAATTTACCACTTTTCGCTAGCTACCGTAGTTTTGGAGATACGCGCCTTTGAACTTTGAGCGCGGCAAATACGAGGAGAGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>314 234 172 171 92 10 7</canonical_bands>
                <polymorphic_bands>405 314 172 92 10 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATAAAAGCCACTTGGCATAA</pcr_primer_p1>
		<pcr_primer_p2>CTCACCTCCTTTAAAATGTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATAAAAGCCACTTGGCATAATCCTATGAACTAGTTTTTCTGGAACCCCATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAATATTTCTGAAAAAAATTTCTTAAAAGTTCTAACAATATTCCAAAGATTGGTTAGTATACAAAAATCCCTAGTCAAATTGGAGTTGGCCCCGGACAAAAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAG</canonical_amplicon>
		<polymorphic_amplicon>TATAAAAGCCACTTGGCATAATCCTATGAACTAGTTTTTCTGGAACCCCATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAATATTTCTGYAAAAAATTTCTTAAAAGTTCTAACAATATTCCAAAGATTGGTTAGTATACAAAAATCCCTAGTCAAATTGGAGTTGGCCCCGGACAAAAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25137</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>774040</contig_pos>
        <strand>+</strand>
        <context>CTGYAAAAAA[A/T]TTCTTAAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTCTTGCCACCCAACATAATTTTCGAGATAAAATATTTCTGAAAAAAA</left_flank>
        <right_flank>TTCTTAAAAGTTCTAACAATATTCCAAAGATTGGTTAGTATACAAAAATC</right_flank>
        <qual_score>130</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGGCGCATATACTCAAAACTACAGTAGGTAGAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGGCTTGTTTTATGTATTCTGAAATTTCTAGGATCTCAAAGTTGACTTTTTGAGATTTTCCATTTTTTTTCCAGCTTGTTTAATGTCCAGCAGGACTTTAAGGTCATAAATTTAGAATCCAAAAGTAACATAATCTCTTCATATTTAAAGTAATTCAGGCATATTGATAAGATTAACATATCAAAGTTCTCTGAATAAAAAACTTTTTTTTATTTACTCAAATATAGAAATTGCATAGGCACTAGAGTGCAAACTACAAATACTAAAATTTGAAATTTCCAAAAATTTCAAAATATAGGTAGTTCCCTACTAAAAAAAATCCAATTACATATTTATAAAAGCCACTTGGCATAATCCTATGAACTAGTTTTTCTGGAACCCCATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAATATTTCTGAAAAAAATTTCTTAAAAGTTCTAACAATATTCCAAAGATTGGTTAGTATACAAAAATCCCTAGTCAAATTGGAGTTGGCCCCGGACAAAAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAGCAGACCAAAAAATCTGAAAATTTCAGAAATCAGAGAGTGGACTTAGATCTTCATTTTTGTAGTTGACAACTTTTTTCTAGCTACCGTAGTTTTTGAGATATCCGCCTTTAAAGTTAGTTAACCTACTTGGCGCCCCTACCCTCCCTTTCCGCCGCCGCCTGTGAGGGTCGCCAAACTTTCAAAGCGCATACCTCAAAAACGGGAATAGTTTTCAAAAAGGTGTCAACTACAAAAAAGTACAAATTGAAATTTGACACATTTTTGCAATTTACCACTTTTCGCTAGCTACCGTAGTTTTGGAGATACGCGCCTTTGAACTTTGAGCGCGGCAAATACGAGGAGAGGGGTGAAAG</canonical>
            <polymorphic>AAAGGCGCATATACTCAAAACTACAGTAGGTAGAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGGCTTGTTTTATGTATTCTGAAATTTCTAGGATCTCAAAGTTGACTTTTTGAGATTTTCCATTTTTTTTCCAGCTTGTTTAATGTCCAGCAGGACTTTAAGGTCATAAATTTAGAATCCAAAAGTAACATAATCTCTTCATATTTAAAGTAATTCAGGCATATTGATAAGATTAACATATCAAAGTTCTCTGAATAAAAAACTTTTTTTTATTTACTCAAATATAGAAATTGCATAGGCACTAGAGTGCAAACTACAAATACTAAAATTTGAAATTTCCAAAAATTTCAAAATATAGGTAGTTCCCTACTAAAAAAAATCCAATTACATATTTATAAAAGCCACTTGGCATAATCCTATGAACTAGTTTTTCTGGAACCCCATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAATATTTCTGAAAAAAAWTTCTTAAAAGTTCTAACAATATTCCAAAGATTGGTTAGTATACAAAAATCCCTAGTCAAATTGGAGTTGGCCCCGGACAAAAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAGCAGACCAAAAAATCTGAAAATTTCAGAAATCAGAGAGTGGACTTAGATCTTCATTTTTGTAGTTGACAACTTTTTTCTAGCTACCGTAGTTTTTGAGATATCCGCCTTTAAAGTTAGTTAACCTACTTGGCGCCCCTACCCTCCCTTTCCGCCGCCGCCTGTGAGGGTCGCCAAACTTTCAAAGCGCATACCTCAAAAACGGGAATAGTTTTCAAAAAGGTGTCAACTACAAAAAAGTACAAATTGAAATTTGACACATTTTTGCAATTTACCACTTTTCGCTAGCTACCGTAGTTTTGGAGATACGCGCCTTTGAACTTTGAGCGCGGCAAATACGAGGAGAGGGGTGAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>229 158 149 106 101 87 86 67 10 7</canonical_bands>
                <polymorphic_bands>250 229 158 106 87 86 67 10 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>223 88 87 86 81 77 67 61 43 40 39 38 29 18 10 7 6</canonical_bands>
                <polymorphic_bands>223 90 88 87 86 81 77 67 43 40 39 38 18 10 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATAAAAGCCACTTGGCATAA</pcr_primer_p1>
		<pcr_primer_p2>CTCACCTCCTTTAAAATGTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATAAAAGCCACTTGGCATAATCCTATGAACTAGTTTTTCTGGAACCCCATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAATATTTCTGAAAAAAATTTCTTAAAAGTTCTAACAATATTCCAAAGATTGGTTAGTATACAAAAATCCCTAGTCAAATTGGAGTTGGCCCCGGACAAAAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAG</canonical_amplicon>
		<polymorphic_amplicon>TATAAAAGCCACTTGGCATAATCCTATGAACTAGTTTTTCTGGAACCCCATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAATATTTCTGAAAAAAAWTTCTTAAAAGTTCTAACAATATTCCAAAGATTGGTTAGTATACAAAAATCCCTAGTCAAATTGGAGTTGGCCCCGGACAAAAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25138</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>774199</contig_pos>
        <strand></strand>
        <context>AGACcaaaaa[A/G]tctgaaaatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAGCAGACCAAAAA</left_flank>
        <right_flank>TCTGAAAATTTCAGAAATCAGAGAGTGGACTTAGATCTTCATTTTTGTAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTAAGGTCATAAATTTAGAATCCAAAAGTAACATAATCTCTTCATATTTAAAGTAATTCAGGCATATTGATAAGATTAACATATCAAAGTTCTCTGAATAAAAAACTTTTTTTTATTTACTCAAATATAGAAATTGCATAGGCACTAGAGTGCAAACTACAAATACTAAAATTTGAAATTTCCAAAAATTTCAAAATATAGGTAGTTCCCTACTAAAAAAAATCCAATTACATATTTATAAAAGCCACTTGGCATAATCCTATGAACTAGTTTTTCTGGAACCCCATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAATATTTCTGAAAAAAATTTCTTAAAAGTTCTAACAATATTCCAAAGATTGGTTAGTATACAAAAATCCCTAGTCAAATTGGAGTTGGCCCCGGACAAAAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAGCAGACCAAAAAATCTGAAAATTTCAGAAATCAGAGAGTGGACTTAGATCTTCATTTTTGTAGTTGACAACTTTTTTCTAGCTACCGTAGTTTTTGAGATATCCGCCTTTAAAGTTAGTTAACCTACTTGGCGCCCCTACCCTCCCTTTCCGCCGCCGCCTGTGAGGGTCGCCAAACTTTCAAAGCGCATACCTCAAAAACGGGAATAGTTTTCAAAAAGGTGTCAACTACAAAAAAGTACAAATTGAAATTTGACACATTTTTGCAATTTACCACTTTTCGCTAGCTACCGTAGTTTTGGAGATACGCGCCTTTGAACTTTGAGCGCGGCAAATACGAGGAGAGGGGTGAAAGGATGCCTCCTTGGGAGCAGCGCGCTAAATTTAAAGGCGCATATTTCAAAAACCAGAATAGTTAAGAAAAAGTTGTCAACTACAAAAATGAAGCTCGCATTTTTCAGCACTTCAAACAAAGACGCCTATAGAATTCACAAATCAACACAAACCAGTGAAA</canonical>
            <polymorphic>ACTTTAAGGTCATAAATTTAGAATCCAAAAGTAACATAATCTCTTCATATTTAAAGTAATTCAGGCATATTGATAAGATTAACATATCAAAGTTCTCTGAATAAAAAACTTTTTTTTATTTACTCAAATATAGAAATTGCATAGGCACTAGAGTGCAAACTACAAATACTAAAATTTGAAATTTCCAAAAATTTCAAAATATAGGTAGTTCCCTACTAAAAAAAATCCAATTACATATTTATAAAAGCCACTTGGCATAATCCTATGAACTAGTTTTTCTGGAACCCCATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAATATTTCTGAAAAAAATTTCTTAAAAGTTCTAACAATATTCCAAAGATTGGTTAGTATACAAAAATCCCTAGTCAAATTGGAGTTGGCCCCGGACAAAAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAGCAGACCAAAAARTCTGAAAATTTCAGAAATCAGAGAGTGGACTTAGATCTTCATTTTTGTAGTTGACAACTTTTTTCTAGCTACCGTAGTTTTTGAGATATCCGCCTTTAAAGTTAGTTAACCTACTTGGCGCCCCTACCCTCCCTTTCCGCCGCCGCCTGTGAGGGTCGCCAAACTTTCAAAGCGCATACCTCAAAAACGGGAATAGTTTTCAAAAAGGTGTCAACTACAAAAAAGTACAAATTGAAATTTGACACATTTTTGCAATTTACCACTTTTCGCTAGCTACCGTAGTTTTGGAGATACGCGCCTTTGAACTTTGAGCGCGGCAAATACGAGGAGAGGGGTGAAAGGATGCCTCCTTGGGAGCAGCGCGCTAAATTTAAAGGCGCATATTTCAAAAACCAGAATAGTTAAGAAAAAGTTGTCAACTACAAAAATGAAGCTCGCATTTTTCAGCACTTCAAACAAAGACGCCTATAGAATTCACAAATCAACACAAACCAGTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACGAAATGAAGATCCAAAT</pcr_primer_p1>
		<pcr_primer_p2>TATAGGCGTCTTTGTTTGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>549</pcr_amplicon_size>
		<canonical_amplicon>AAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAGCAGACCAAAAAATCTGAAAATTTCAGAAATCAGAGAGTGGACTTAGATCTTCATTTTTGTAGTTGACAACTTTTTTCTAGCTACCGTAGTTTTTGAGATATCCGCCTTTAAAGTTAGTTAACCTACTTGGCGCCCCTACCCTCCCTTTCCGCCGCCGCCTGTGAGGGTCGCCAAACTTTCAAAGCGCATACCTCAAAAACGGGAATAGTTTTCAAAAAGGTGTCAACTACAAAAAAGTACAAATTGAAATTTGACACATTTTTGCAATTTACCACTTTTCGCTAGCTACCGTAGTTTTGGAGATACGCGCCTTTGAACTTTGAGCGCGGCAAATACGAGGAGAGGGGTGAAAGGATGCCTCCTTGGGAGCAGCGCGCTAAATTTAAAGGCGCATATTTCAAAAACCAGAATAGTTAAGAAAAAGTTGTCAACTACAAAAATGAAGCTCGCATTTTTCAGCACTTCAAACAAAGACGCCTATA</canonical_amplicon>
		<polymorphic_amplicon>AAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAGCAGACCAAAAARTCTGAAAATTTCAGAAATCAGAGAGTGGACTTAGATCTTCATTTTTGTAGTTGACAACTTTTTTCTAGCTACCGTAGTTTTTGAGATATCCGCCTTTAAAGTTAGTTAACCTACTTGGCGCCCCTACCCTCCCTTTCCGCCGCCGCCTGTGAGGGTCGCCAAACTTTCAAAGCGCATACCTCAAAAACGGGAATAGTTTTCAAAAAGGTGTCAACTACAAAAAAGTACAAATTGAAATTTGACACATTTTTGCAATTTACCACTTTTCGCTAGCTACCGTAGTTTTGGAGATACGCGCCTTTGAACTTTGAGCGCGGCAAATACGAGGAGAGGGGTGAAAGGATGCCTCCTTGGGAGCAGCGCGCTAAATTTAAAGGCGCATATTTCAAAAACCAGAATAGTTAAGAAAAAGTTGTCAACTACAAAAATGAAGCTCGCATTTTTCAGCACTTCAAACAAAGACGCCTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25139</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>774430</contig_pos>
        <strand></strand>
        <context>aaaagtacaa[A/C]ttgaaatttg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCAAAAACGGGAATAGTTTTCAAAAAGGTGTCAACTACAAAAAAGTACAA</left_flank>
        <right_flank>TTGAAATTTGACACATTTTTGCAATTTACCACTTTTCGCTAGCTACCGTA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACATATTTATAAAAGCCACTTGGCATAATCCTATGAACTAGTTTTTCTGGAACCCCATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAATATTTCTGAAAAAAATTTCTTAAAAGTTCTAACAATATTCCAAAGATTGGTTAGTATACAAAAATCCCTAGTCAAATTGGAGTTGGCCCCGGACAAAAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAGCAGACCAAAAAATCTGAAAATTTCAGAAATCAGAGAGTGGACTTAGATCTTCATTTTTGTAGTTGACAACTTTTTTCTAGCTACCGTAGTTTTTGAGATATCCGCCTTTAAAGTTAGTTAACCTACTTGGCGCCCCTACCCTCCCTTTCCGCCGCCGCCTGTGAGGGTCGCCAAACTTTCAAAGCGCATACCTCAAAAACGGGAATAGTTTTCAAAAAGGTGTCAACTACAAAAAAGTACAAATTGAAATTTGACACATTTTTGCAATTTACCACTTTTCGCTAGCTACCGTAGTTTTGGAGATACGCGCCTTTGAACTTTGAGCGCGGCAAATACGAGGAGAGGGGTGAAAGGATGCCTCCTTGGGAGCAGCGCGCTAAATTTAAAGGCGCATATTTCAAAAACCAGAATAGTTAAGAAAAAGTTGTCAACTACAAAAATGAAGCTCGCATTTTTCAGCACTTCAAACAAAGACGCCTATAGAATTCACAAATCAACACAAACCAGTGAAAGCTACGCAGTGTAAGACGAAAAATGGTTTTTTTGGCTTTTTCAAACTAGAAGGGACTTAAATTTTCAGATGAGGACCCAAAAATCGTCCTAGACAAACTTCCCGGCGTCTTTCGCATCTTATCAGCCATCAATCTTCAAAACCAGCTAACCAACAGGACTATCAAAATGGATACTGTAGTTCAGGAGATTCTAAACCTGAAAAGTCTCAAGGATTTAGAGAGTTTTGATAA</canonical>
            <polymorphic>TACATATTTATAAAAGCCACTTGGCATAATCCTATGAACTAGTTTTTCTGGAACCCCATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAATATTTCTGAAAAAAATTTCTTAAAAGTTCTAACAATATTCCAAAGATTGGTTAGTATACAAAAATCCCTAGTCAAATTGGAGTTGGCCCCGGACAAAAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAGCAGACCAAAAAATCTGAAAATTTCAGAAATCAGAGAGTGGACTTAGATCTTCATTTTTGTAGTTGACAACTTTTTTCTAGCTACCGTAGTTTTTGAGATATCCGCCTTTAAAGTTAGTTAACCTACTTGGCGCCCCTACCCTCCCTTTCCGCCGCCGCCTGTGAGGGTCGCCAAACTTTCAAAGCGCATACCTCAAAAACGGGAATAGTTTTCAAAAAGGTGTCAACTACAAAAAAGTACAAMTTGAAATTTGACACATTTTTGCAATTTACCACTTTTCGCTAGCTACCGTAGTTTTGGAGATACGCGCCTTTGAACTTTGAGCGCGGCAAATACGAGGAGAGGGGTGAAAGGATGCCTCCTTGGGAGCAGCGCGCTAAATTTAAAGGCGCATATTTCAAAAACCAGAATAGTTAAGAAAAAGTTGTCAACTACAAAAATGAAGCTCGCATTTTTCAGCACTTCAAACAAAGACGCCTATAGAATTCACAAATCAACACAAACCAGTGAAAGCTACGCAGTGTAAGACGAAAAATGGTTTTTTTGGCTTTTTCAAACTAGAAGGGACTTAAATTTTCAGATGAGGACCCAAAAATCGTCCTAGACAAACTTCCCGGCGTCTTTCGCATCTTATCAGCCATCAATCTTCAAAACCAGCTAACCAACAGGACTATCAAAATGGATACTGTAGTTCAGGAGATTCTAAACCTGAAAAGTCTCAAGGATTTAGAGAGTTTTGATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>223 172 114 104 88 78 67 61 40 29 18 6</canonical_bands>
                <polymorphic_bands>229 172 114 104 88 78 67 61 40 29 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTAAAGGAGGTGAGCAGAC</pcr_primer_p1>
		<pcr_primer_p2>TATAGGCGTCTTTGTTTGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>498</pcr_amplicon_size>
		<canonical_amplicon>TTTTAAAGGAGGTGAGCAGACCAAAAAATCTGAAAATTTCAGAAATCAGAGAGTGGACTTAGATCTTCATTTTTGTAGTTGACAACTTTTTTCTAGCTACCGTAGTTTTTGAGATATCCGCCTTTAAAGTTAGTTAACCTACTTGGCGCCCCTACCCTCCCTTTCCGCCGCCGCCTGTGAGGGTCGCCAAACTTTCAAAGCGCATACCTCAAAAACGGGAATAGTTTTCAAAAAGGTGTCAACTACAAAAAAGTACAAATTGAAATTTGACACATTTTTGCAATTTACCACTTTTCGCTAGCTACCGTAGTTTTGGAGATACGCGCCTTTGAACTTTGAGCGCGGCAAATACGAGGAGAGGGGTGAAAGGATGCCTCCTTGGGAGCAGCGCGCTAAATTTAAAGGCGCATATTTCAAAAACCAGAATAGTTAAGAAAAAGTTGTCAACTACAAAAATGAAGCTCGCATTTTTCAGCACTTCAAACAAAGACGCCTATA</canonical_amplicon>
		<polymorphic_amplicon>TTTTAAAGGAGGTGAGCAGACCAAAAAATCTGAAAATTTCAGAAATCAGAGAGTGGACTTAGATCTTCATTTTTGTAGTTGACAACTTTTTTCTAGCTACCGTAGTTTTTGAGATATCCGCCTTTAAAGTTAGTTAACCTACTTGGCGCCCCTACCCTCCCTTTCCGCCGCCGCCTGTGAGGGTCGCCAAACTTTCAAAGCGCATACCTCAAAAACGGGAATAGTTTTCAAAAAGGTGTCAACTACAAAAAAGTACAAMTTGAAATTTGACACATTTTTGCAATTTACCACTTTTCGCTAGCTACCGTAGTTTTGGAGATACGCGCCTTTGAACTTTGAGCGCGGCAAATACGAGGAGAGGGGTGAAAGGATGCCTCCTTGGGAGCAGCGCGCTAAATTTAAAGGCGCATATTTCAAAAACCAGAATAGTTAAGAAAAAGTTGTCAACTACAAAAATGAAGCTCGCATTTTTCAGCACTTCAAACAAAGACGCCTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25140</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>774487</contig_pos>
        <strand></strand>
        <context>cgtagttttg[G/A]agatacgcgc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTGACACATTTTTGCAATTTACCACTTTTCGCTAGCTACCGTAGTTTTG</left_flank>
        <right_flank>AGATACGCGCCTTTGAACTTTGAGCGCGGCAAATACGAGGAGAGGGGTGA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAATATTTCTGAAAAAAATTTCTTAAAAGTTCTAACAATATTCCAAAGATTGGTTAGTATACAAAAATCCCTAGTCAAATTGGAGTTGGCCCCGGACAAAAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAGCAGACCAAAAAATCTGAAAATTTCAGAAATCAGAGAGTGGACTTAGATCTTCATTTTTGTAGTTGACAACTTTTTTCTAGCTACCGTAGTTTTTGAGATATCCGCCTTTAAAGTTAGTTAACCTACTTGGCGCCCCTACCCTCCCTTTCCGCCGCCGCCTGTGAGGGTCGCCAAACTTTCAAAGCGCATACCTCAAAAACGGGAATAGTTTTCAAAAAGGTGTCAACTACAAAAAAGTACAAATTGAAATTTGACACATTTTTGCAATTTACCACTTTTCGCTAGCTACCGTAGTTTTGGAGATACGCGCCTTTGAACTTTGAGCGCGGCAAATACGAGGAGAGGGGTGAAAGGATGCCTCCTTGGGAGCAGCGCGCTAAATTTAAAGGCGCATATTTCAAAAACCAGAATAGTTAAGAAAAAGTTGTCAACTACAAAAATGAAGCTCGCATTTTTCAGCACTTCAAACAAAGACGCCTATAGAATTCACAAATCAACACAAACCAGTGAAAGCTACGCAGTGTAAGACGAAAAATGGTTTTTTTGGCTTTTTCAAACTAGAAGGGACTTAAATTTTCAGATGAGGACCCAAAAATCGTCCTAGACAAACTTCCCGGCGTCTTTCGCATCTTATCAGCCATCAATCTTCAAAACCAGCTAACCAACAGGACTATCAAAATGGATACTGTAGTTCAGGAGATTCTAAACCTGAAAAGTCTCAAGGATTTAGAGAGTTTTGATAAACAAAAAGTCGATGAATTTGCTGATAAGATATCTAGAGCCGATTTTAGCTCTGATCT</canonical>
            <polymorphic>ATTTTTCTTGCCACCCAACATAATTTTCGAGATAAAATATTTCTGAAAAAAATTTCTTAAAAGTTCTAACAATATTCCAAAGATTGGTTAGTATACAAAAATCCCTAGTCAAATTGGAGTTGGCCCCGGACAAAAACGAAATGAAGATCCAAATTTTGGTGGTTGTTGCTTTTTTGGTTCTACATTTTAAAGGAGGTGAGCAGACCAAAAAATCTGAAAATTTCAGAAATCAGAGAGTGGACTTAGATCTTCATTTTTGTAGTTGACAACTTTTTTCTAGCTACCGTAGTTTTTGAGATATCCGCCTTTAAAGTTAGTTAACCTACTTGGCGCCCCTACCCTCCCTTTCCGCCGCCGCCTGTGAGGGTCGCCAAACTTTCAAAGCGCATACCTCAAAAACGGGAATAGTTTTCAAAAAGGTGTCAACTACAAAAAAGTACAAATTGAAATTTGACACATTTTTGCAATTTACCACTTTTCGCTAGCTACCGTAGTTTTGRAGATACGCGCCTTTGAACTTTGAGCGCGGCAAATACGAGGAGAGGGGTGAAAGGATGCCTCCTTGGGAGCAGCGCGCTAAATTTAAAGGCGCATATTTCAAAAACCAGAATAGTTAAGAAAAAGTTGTCAACTACAAAAATGAAGCTCGCATTTTTCAGCACTTCAAACAAAGACGCCTATAGAATTCACAAATCAACACAAACCAGTGAAAGCTACGCAGTGTAAGACGAAAAATGGTTTTTTTGGCTTTTTCAAACTAGAAGGGACTTAAATTTTCAGATGAGGACCCAAAAATCGTCCTAGACAAACTTCCCGGCGTCTTTCGCATCTTATCAGCCATCAATCTTCAAAACCAGCTAACCAACAGGACTATCAAAATGGATACTGTAGTTCAGGAGATTCTAAACCTGAAAAGTCTCAAGGATTTAGAGAGTTTTGATAAACAAAAAGTCGATGAATTTGCTGATAAGATATCTAGAGCCGATTTTAGCTCTGATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTAAAGGAGGTGAGCAGAC</pcr_primer_p1>
		<pcr_primer_p2>TATAGGCGTCTTTGTTTGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>498</pcr_amplicon_size>
		<canonical_amplicon>TTTTAAAGGAGGTGAGCAGACCAAAAAATCTGAAAATTTCAGAAATCAGAGAGTGGACTTAGATCTTCATTTTTGTAGTTGACAACTTTTTTCTAGCTACCGTAGTTTTTGAGATATCCGCCTTTAAAGTTAGTTAACCTACTTGGCGCCCCTACCCTCCCTTTCCGCCGCCGCCTGTGAGGGTCGCCAAACTTTCAAAGCGCATACCTCAAAAACGGGAATAGTTTTCAAAAAGGTGTCAACTACAAAAAAGTACAAATTGAAATTTGACACATTTTTGCAATTTACCACTTTTCGCTAGCTACCGTAGTTTTGGAGATACGCGCCTTTGAACTTTGAGCGCGGCAAATACGAGGAGAGGGGTGAAAGGATGCCTCCTTGGGAGCAGCGCGCTAAATTTAAAGGCGCATATTTCAAAAACCAGAATAGTTAAGAAAAAGTTGTCAACTACAAAAATGAAGCTCGCATTTTTCAGCACTTCAAACAAAGACGCCTATA</canonical_amplicon>
		<polymorphic_amplicon>TTTTAAAGGAGGTGAGCAGACCAAAAAATCTGAAAATTTCAGAAATCAGAGAGTGGACTTAGATCTTCATTTTTGTAGTTGACAACTTTTTTCTAGCTACCGTAGTTTTTGAGATATCCGCCTTTAAAGTTAGTTAACCTACTTGGCGCCCCTACCCTCCCTTTCCGCCGCCGCCTGTGAGGGTCGCCAAACTTTCAAAGCGCATACCTCAAAAACGGGAATAGTTTTCAAAAAGGTGTCAACTACAAAAAAGTACAAATTGAAATTTGACACATTTTTGCAATTTACCACTTTTCGCTAGCTACCGTAGTTTTGRAGATACGCGCCTTTGAACTTTGAGCGCGGCAAATACGAGGAGAGGGGTGAAAGGATGCCTCCTTGGGAGCAGCGCGCTAAATTTAAAGGCGCATATTTCAAAAACCAGAATAGTTAAGAAAAAGTTGTCAACTACAAAAATGAAGCTCGCATTTTTCAGCACTTCAAACAAAGACGCCTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25141</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>786334</contig_pos>
        <strand>+</strand>
        <context>TTCGATATTT[A/C]GAGAAGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTAAAAATTGAAAAAAAAAATCGAAAAAAGAGCACTACAATTCGATATTT</left_flank>
        <right_flank>GAGAAGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGCTACAAACTGCAAAATTGCTCAGCATAAAATTTTCTACAATTTGATTACAAAAACATCTACCTGGCCCTCAAAAAAGTCCTCTGTATTCGCGACCAATGAAACACCTTCGGGTCGACATGAGACGAAAGGTTTGCCTGAAAAATTGAAACTAAAAAAGAAGTTTTTTGGTCAATTTCTCTCAGAAAGTCCAATTACACCCTCCACTACACTCACCAACTATTCGATTTTCGAACGTTTTCGCTTCGCTGATGTTTCCGGAACAGAGGAAGAACACCTGTAATTTTCTCGCCCTTCTTGTGTTTTTTTTTTTGGGATTTCCGGGATTTTCCATTTGACCTAGAATCCCTAGAGTCCCGGAAATTTCACTTACCGTTAAATATAGTAAAGAGTTTTGTAGAGAAAAAGAAGAAGAAGATGGGAAAATGAACATTCTGGAAAAAAAATCTAAAAATTGAAAAAAAAAATCGAAAAAAGAGCACTACAATTCGATATTTAGAGAAGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTT</canonical>
            <polymorphic>AAAGCTACAAACTGCAAAATTGCTCAGCATAAAATTTTCTACAATTTGATTACAAAAACATCTACCTGGCCCTCAAAAAAGTCCTCTGTATTCGCGACCAATGAAACACCTTCGGGTCGACATGAGACGAAAGGTTTGCCTGAAAAATTGAAACTAAAAAAGAAGTTTTTTGGTCAATTTCTCTCAGAAAGTCCAATTACACCCTCCACTACACTCACCAACTATTCGATTTTCGAACGTTTTCGCTTCGCTGATGTTTCCGGAACAGAGGAAGAACACCTGTAATTTTCTCGCCCTTCTTGTGTTTTTTTTTTTGGGATTTCCGGGATTTTCCATTTGACCTAGAATCCCTAGAGTCCCGGAAATTTCACTTACCGTTAAATATAGTAAAGAGTTTTGTAGAGAAAAAGAAGAAGAAGATGGGAAAATGAACATTCTGGAAAAAAAATCTAAAAATTGAAAAAAAAAATCGAAAAAAGAGCACTACAATTCGATATTTMGAGAAGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATGAACATTCTGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATAAAAAGGTGTCAAATGTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>718</pcr_amplicon_size>
		<canonical_amplicon>GAAAATGAACATTCTGGAAAAAAAATCTAAAAATTGAAAAAAAAAATCGAAAAAAGAGCACTACAATTCGATATTTAGAGAAGAAAAAGGTTCTGAAAC</canonical_amplicon>
		<polymorphic_amplicon>GAAAATGAACATTCTGGAAAAAAAATCTAAAAATTGAAAAAAAAAATCGAAAAAAGAGCACTACAATTCGATATTTMGAGAAGAAAAAGGTTCTGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25142</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>786366</contig_pos>
        <strand>+</strand>
        <context>CAGTTATAAA[C/T]GATTTAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACTACAATTCGATATTTAGAGAAGAAAAAGGTTCTGAAACAGTTATAAA</left_flank>
        <right_flank>GATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAA</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTCTACAATTTGATTACAAAAACATCTACCTGGCCCTCAAAAAAGTCCTCTGTATTCGCGACCAATGAAACACCTTCGGGTCGACATGAGACGAAAGGTTTGCCTGAAAAATTGAAACTAAAAAAGAAGTTTTTTGGTCAATTTCTCTCAGAAAGTCCAATTACACCCTCCACTACACTCACCAACTATTCGATTTTCGAACGTTTTCGCTTCGCTGATGTTTCCGGAACAGAGGAAGAACACCTGTAATTTTCTCGCCCTTCTTGTGTTTTTTTTTTTGGGATTTCCGGGATTTTCCATTTGACCTAGAATCCCTAGAGTCCCGGAAATTTCACTTACCGTTAAATATAGTAAAGAGTTTTGTAGAGAAAAAGAAGAAGAAGATGGGAAAATGAACATTCTGGAAAAAAAATCTAAAAATTGAAAAAAAAAATCGAAAAAAGAGCACTACAATTCGATATTTAGAGAAGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAG</canonical>
            <polymorphic>AATTTTCTACAATTTGATTACAAAAACATCTACCTGGCCCTCAAAAAAGTCCTCTGTATTCGCGACCAATGAAACACCTTCGGGTCGACATGAGACGAAAGGTTTGCCTGAAAAATTGAAACTAAAAAAGAAGTTTTTTGGTCAATTTCTCTCAGAAAGTCCAATTACACCCTCCACTACACTCACCAACTATTCGATTTTCGAACGTTTTCGCTTCGCTGATGTTTCCGGAACAGAGGAAGAACACCTGTAATTTTCTCGCCCTTCTTGTGTTTTTTTTTTTGGGATTTCCGGGATTTTCCATTTGACCTAGAATCCCTAGAGTCCCGGAAATTTCACTTACCGTTAAATATAGTAAAGAGTTTTGTAGAGAAAAAGAAGAAGAAGATGGGAAAATGAACATTCTGGAAAAAAAATCTAAAAATTGAAAAAAAAAATCGAAAAAAGAGCACTACAATTCGATATTTAGAGAAGAAAAAGGTTCTGAAACAGTTATAAAYGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGAGCACTACAATTCGATA</pcr_primer_p1>
		<pcr_primer_p2>ATAAAAAGGTGTCAAATGTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>668</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGAGCACTACAATTCGATATTTAGAGAAGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATA</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGAGCACTACAATTCGATATTTAGAGAAGAAAAAGGTTCTGAAACAGTTATAAAYGATTTAAAATAGTCTGAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25143</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>786380</contig_pos>
        <strand>+</strand>
        <context>TTAAAATAGT[C/T]TSAAAATAtg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTAGAGAAGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGT</left_flank>
        <right_flank>TGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATTACAAAAACATCTACCTGGCCCTCAAAAAAGTCCTCTGTATTCGCGACCAATGAAACACCTTCGGGTCGACATGAGACGAAAGGTTTGCCTGAAAAATTGAAACTAAAAAAGAAGTTTTTTGGTCAATTTCTCTCAGAAAGTCCAATTACACCCTCCACTACACTCACCAACTATTCGATTTTCGAACGTTTTCGCTTCGCTGATGTTTCCGGAACAGAGGAAGAACACCTGTAATTTTCTCGCCCTTCTTGTGTTTTTTTTTTTGGGATTTCCGGGATTTTCCATTTGACCTAGAATCCCTAGAGTCCCGGAAATTTCACTTACCGTTAAATATAGTAAAGAGTTTTGTAGAGAAAAAGAAGAAGAAGATGGGAAAATGAACATTCTGGAAAAAAAATCTAAAAATTGAAAAAAAAAATCGAAAAAAGAGCACTACAATTCGATATTTAGAGAAGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACT</canonical>
            <polymorphic>TGATTACAAAAACATCTACCTGGCCCTCAAAAAAGTCCTCTGTATTCGCGACCAATGAAACACCTTCGGGTCGACATGAGACGAAAGGTTTGCCTGAAAAATTGAAACTAAAAAAGAAGTTTTTTGGTCAATTTCTCTCAGAAAGTCCAATTACACCCTCCACTACACTCACCAACTATTCGATTTTCGAACGTTTTCGCTTCGCTGATGTTTCCGGAACAGAGGAAGAACACCTGTAATTTTCTCGCCCTTCTTGTGTTTTTTTTTTTGGGATTTCCGGGATTTTCCATTTGACCTAGAATCCCTAGAGTCCCGGAAATTTCACTTACCGTTAAATATAGTAAAGAGTTTTGTAGAGAAAAAGAAGAAGAAGATGGGAAAATGAACATTCTGGAAAAAAAATCTAAAAATTGAAAAAAAAAATCGAAAAAAGAGCACTACAATTCGATATTTAGAGAAGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTYTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>375 331 140 124 30</canonical_bands>
                <polymorphic_bands>375 331 154 140</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGAGCACTACAATTCGATA</pcr_primer_p1>
		<pcr_primer_p2>ATAAAAAGGTGTCAAATGTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>668</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGAGCACTACAATTCGATATTTAGAGAAGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGAGCACTACAATTCGATATTTAGAGAAGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTYTGAAAATATGAAAAATTACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25144</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>786382</contig_pos>
        <strand>+</strand>
        <context>AAAATAGTYT[C/G]AAAATAtgaa</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTAGAGAAGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCT</left_flank>
        <right_flank>AAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTACAAAAACATCTACCTGGCCCTCAAAAAAGTCCTCTGTATTCGCGACCAATGAAACACCTTCGGGTCGACATGAGACGAAAGGTTTGCCTGAAAAATTGAAACTAAAAAAGAAGTTTTTTGGTCAATTTCTCTCAGAAAGTCCAATTACACCCTCCACTACACTCACCAACTATTCGATTTTCGAACGTTTTCGCTTCGCTGATGTTTCCGGAACAGAGGAAGAACACCTGTAATTTTCTCGCCCTTCTTGTGTTTTTTTTTTTGGGATTTCCGGGATTTTCCATTTGACCTAGAATCCCTAGAGTCCCGGAAATTTCACTTACCGTTAAATATAGTAAAGAGTTTTGTAGAGAAAAAGAAGAAGAAGATGGGAAAATGAACATTCTGGAAAAAAAATCTAAAAATTGAAAAAAAAAATCGAAAAAAGAGCACTACAATTCGATATTTAGAGAAGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCA</canonical>
            <polymorphic>ATTACAAAAACATCTACCTGGCCCTCAAAAAAGTCCTCTGTATTCGCGACCAATGAAACACCTTCGGGTCGACATGAGACGAAAGGTTTGCCTGAAAAATTGAAACTAAAAAAGAAGTTTTTTGGTCAATTTCTCTCAGAAAGTCCAATTACACCCTCCACTACACTCACCAACTATTCGATTTTCGAACGTTTTCGCTTCGCTGATGTTTCCGGAACAGAGGAAGAACACCTGTAATTTTCTCGCCCTTCTTGTGTTTTTTTTTTTGGGATTTCCGGGATTTTCCATTTGACCTAGAATCCCTAGAGTCCCGGAAATTTCACTTACCGTTAAATATAGTAAAGAGTTTTGTAGAGAAAAAGAAGAAGAAGATGGGAAAATGAACATTCTGGAAAAAAAATCTAAAAATTGAAAAAAAAAATCGAAAAAAGAGCACTACAATTCGATATTTAGAGAAGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTSAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>377 331 138 124 30</canonical_bands>
                <polymorphic_bands>377 331 154 138</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGAGCACTACAATTCGATA</pcr_primer_p1>
		<pcr_primer_p2>ATAAAAAGGTGTCAAATGTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>668</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGAGCACTACAATTCGATATTTAGAGAAGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGAGCACTACAATTCGATATTTAGAGAAGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTSAAAATATGAAAAATTACAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25145</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>786516</contig_pos>
        <strand></strand>
        <context>gatccacctg[G/A]gactaaattt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTG</left_flank>
        <right_flank>GACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCAGAAAGTCCAATTACACCCTCCACTACACTCACCAACTATTCGATTTTCGAACGTTTTCGCTTCGCTGATGTTTCCGGAACAGAGGAAGAACACCTGTAATTTTCTCGCCCTTCTTGTGTTTTTTTTTTTGGGATTTCCGGGATTTTCCATTTGACCTAGAATCCCTAGAGTCCCGGAAATTTCACTTACCGTTAAATATAGTAAAGAGTTTTGTAGAGAAAAAGAAGAAGAAGATGGGAAAATGAACATTCTGGAAAAAAAATCTAAAAATTGAAAAAAAAAATCGAAAAAAGAGCACTACAATTCGATATTTAGAGAAGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGTATCCAAAAGTGGGTCAAAATTTGGGAGTAAAAGGATTAG</canonical>
            <polymorphic>CTCAGAAAGTCCAATTACACCCTCCACTACACTCACCAACTATTCGATTTTCGAACGTTTTCGCTTCGCTGATGTTTCCGGAACAGAGGAAGAACACCTGTAATTTTCTCGCCCTTCTTGTGTTTTTTTTTTTGGGATTTCCGGGATTTTCCATTTGACCTAGAATCCCTAGAGTCCCGGAAATTTCACTTACCGTTAAATATAGTAAAGAGTTTTGTAGAGAAAAAGAAGAAGAAGATGGGAAAATGAACATTCTGGAAAAAAAATCTAAAAATTGAAAAAAAAAATCGAAAAAAGAGCACTACAATTCGATATTTAGAGAAGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGRGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGTATCCAAAAGTGGGTCAAAATTTGGGAGTAAAAGGATTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>304 287 216 142 35 16</canonical_bands>
                <polymorphic_bands>304 303 216 142 35</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>480 287 217 16</canonical_bands>
                <polymorphic_bands>480 303 217</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAAAAGGTTCTGAAACAGTTA</pcr_primer_p1>
		<pcr_primer_p2>ACATAAAAAGGTGTCAAATGTGT</pcr_primer_p2>
		<pcr_amplicon_size>639</pcr_amplicon_size>
		<canonical_amplicon>AGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGT</canonical_amplicon>
		<polymorphic_amplicon>AGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGRGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25146</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>786580</contig_pos>
        <strand></strand>
        <context>tctagatgtc[G/A]aaaatcgrga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTC</left_flank>
        <right_flank>AAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGCTGATGTTTCCGGAACAGAGGAAGAACACCTGTAATTTTCTCGCCCTTCTTGTGTTTTTTTTTTTGGGATTTCCGGGATTTTCCATTTGACCTAGAATCCCTAGAGTCCCGGAAATTTCACTTACCGTTAAATATAGTAAAGAGTTTTGTAGAGAAAAAGAAGAAGAAGATGGGAAAATGAACATTCTGGAAAAAAAATCTAAAAATTGAAAAAAAAAATCGAAAAAAGAGCACTACAATTCGATATTTAGAGAAGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGTATCCAAAAGTGGGTCAAAATTTGGGAGTAAAAGGATTAGAATTTTAAATCCAGAAAATAAGTAGAATAGGAGGTTTTTATGGGTTATGGTGGTGTCCTTGAAC</canonical>
            <polymorphic>TTCGCTGATGTTTCCGGAACAGAGGAAGAACACCTGTAATTTTCTCGCCCTTCTTGTGTTTTTTTTTTTGGGATTTCCGGGATTTTCCATTTGACCTAGAATCCCTAGAGTCCCGGAAATTTCACTTACCGTTAAATATAGTAAAGAGTTTTGTAGAGAAAAAGAAGAAGAAGATGGGAAAATGAACATTCTGGAAAAAAAATCTAAAAATTGAAAAAAAAAATCGAAAAAAGAGCACTACAATTCGATATTTAGAGAAGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCRAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGTATCCAAAAGTGGGTCAAAATTTGGGAGTAAAAGGATTAGAATTTTAAATCCAGAAAATAAGTAGAATAGGAGGTTTTTATGGGTTATGGTGGTGTCCTTGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>307 225 216 150 37 37 21 7</canonical_bands>
                <polymorphic_bands>307 225 216 150 44 37 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAAAAGGTTCTGAAACAGTTA</pcr_primer_p1>
		<pcr_primer_p2>ACATAAAAAGGTGTCAAATGTGT</pcr_primer_p2>
		<pcr_amplicon_size>639</pcr_amplicon_size>
		<canonical_amplicon>AGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGT</canonical_amplicon>
		<polymorphic_amplicon>AGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCRAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25147</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>786588</contig_pos>
        <strand></strand>
        <context>tcraaaatcg[A/G]gattttcaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCG</left_flank>
        <right_flank>GATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTTCCGGAACAGAGGAAGAACACCTGTAATTTTCTCGCCCTTCTTGTGTTTTTTTTTTTGGGATTTCCGGGATTTTCCATTTGACCTAGAATCCCTAGAGTCCCGGAAATTTCACTTACCGTTAAATATAGTAAAGAGTTTTGTAGAGAAAAAGAAGAAGAAGATGGGAAAATGAACATTCTGGAAAAAAAATCTAAAAATTGAAAAAAAAAATCGAAAAAAGAGCACTACAATTCGATATTTAGAGAAGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGTATCCAAAAGTGGGTCAAAATTTGGGAGTAAAAGGATTAGAATTTTAAATCCAGAAAATAAGTAGAATAGGAGGTTTTTATGGGTTATGGTGGTGTCCTTGAACTGTATTTG</canonical>
            <polymorphic>TGTTTCCGGAACAGAGGAAGAACACCTGTAATTTTCTCGCCCTTCTTGTGTTTTTTTTTTTGGGATTTCCGGGATTTTCCATTTGACCTAGAATCCCTAGAGTCCCGGAAATTTCACTTACCGTTAAATATAGTAAAGAGTTTTGTAGAGAAAAAGAAGAAGAAGATGGGAAAATGAACATTCTGGAAAAAAAATCTAAAAATTGAAAAAAAAAATCGAAAAAAGAGCACTACAATTCGATATTTAGAGAAGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGRGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGTATCCAAAAGTGGGTCAAAATTTGGGAGTAAAAGGATTAGAATTTTAAATCCAGAAAATAAGTAGAATAGGAGGTTTTTATGGGTTATGGTGGTGTCCTTGAACTGTATTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>315 217 216 150 37 37 21 7</canonical_bands>
                <polymorphic_bands>315 217 216 150 44 37 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAAAAGGTTCTGAAACAGTTA</pcr_primer_p1>
		<pcr_primer_p2>ACATAAAAAGGTGTCAAATGTGT</pcr_primer_p2>
		<pcr_amplicon_size>639</pcr_amplicon_size>
		<canonical_amplicon>AGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGT</canonical_amplicon>
		<polymorphic_amplicon>AGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGRGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25148</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>786650</contig_pos>
        <strand></strand>
        <context>caaaatttgt[G/T]gaaaatatga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGT</left_flank>
        <right_flank>GAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATTTCCGGGATTTTCCATTTGACCTAGAATCCCTAGAGTCCCGGAAATTTCACTTACCGTTAAATATAGTAAAGAGTTTTGTAGAGAAAAAGAAGAAGAAGATGGGAAAATGAACATTCTGGAAAAAAAATCTAAAAATTGAAAAAAAAAATCGAAAAAAGAGCACTACAATTCGATATTTAGAGAAGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGTATCCAAAAGTGGGTCAAAATTTGGGAGTAAAAGGATTAGAATTTTAAATCCAGAAAATAAGTAGAATAGGAGGTTTTTATGGGTTATGGTGGTGTCCTTGAACTGTATTTGCATAATAATATAGCTATGGACCACACCTTGTTATGCAACACATTCGTCATTGCTAATCCTAT</canonical>
            <polymorphic>GGATTTCCGGGATTTTCCATTTGACCTAGAATCCCTAGAGTCCCGGAAATTTCACTTACCGTTAAATATAGTAAAGAGTTTTGTAGAGAAAAAGAAGAAGAAGATGGGAAAATGAACATTCTGGAAAAAAAATCTAAAAATTGAAAAAAAAAATCGAAAAAAGAGCACTACAATTCGATATTTAGAGAAGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTKGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGTATCCAAAAGTGGGTCAAAATTTGGGAGTAAAAGGATTAGAATTTTAAATCCAGAAAATAAGTAGAATAGGAGGTTTTTATGGGTTATGGTGGTGTCCTTGAACTGTATTTGCATAATAATATAGCTATGGACCACACCTTGTTATGCAACACATTCGTCATTGCTAATCCTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>145 139 113 80 75 66 54 41 40 35 31 29 27 22 22 18 18 15 13 9 3 3 2</canonical_bands>
                <polymorphic_bands>166 145 113 80 75 66 54 41 40 35 31 29 22 22 18 18 15 13 9 3 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAAAAGGTTCTGAAACAGTTA</pcr_primer_p1>
		<pcr_primer_p2>ACATAAAAAGGTGTCAAATGTGT</pcr_primer_p2>
		<pcr_amplicon_size>639</pcr_amplicon_size>
		<canonical_amplicon>AGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGT</canonical_amplicon>
		<polymorphic_amplicon>AGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTKGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25149</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>786671</contig_pos>
        <strand></strand>
        <context>atttcagcgc[G/A]aawacacttg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGC</left_flank>
        <right_flank>AATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACCTAGAATCCCTAGAGTCCCGGAAATTTCACTTACCGTTAAATATAGTAAAGAGTTTTGTAGAGAAAAAGAAGAAGAAGATGGGAAAATGAACATTCTGGAAAAAAAATCTAAAAATTGAAAAAAAAAATCGAAAAAAGAGCACTACAATTCGATATTTAGAGAAGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGTATCCAAAAGTGGGTCAAAATTTGGGAGTAAAAGGATTAGAATTTTAAATCCAGAAAATAAGTAGAATAGGAGGTTTTTATGGGTTATGGTGGTGTCCTTGAACTGTATTTGCATAATAATATAGCTATGGACCACACCTTGTTATGCAACACATTCGTCATTGCTAATCCTATAGATGAAAACTTCTGATAAGA</canonical>
            <polymorphic>TGACCTAGAATCCCTAGAGTCCCGGAAATTTCACTTACCGTTAAATATAGTAAAGAGTTTTGTAGAGAAAAAGAAGAAGAAGATGGGAAAATGAACATTCTGGAAAAAAAATCTAAAAATTGAAAAAAAAAATCGAAAAAAGAGCACTACAATTCGATATTTAGAGAAGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCRAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGTATCCAAAAGTGGGTCAAAATTTGGGAGTAAAAGGATTAGAATTTTAAATCCAGAAAATAAGTAGAATAGGAGGTTTTTATGGGTTATGGTGGTGTCCTTGAACTGTATTTGCATAATAATATAGCTATGGACCACACCTTGTTATGCAACACATTCGTCATTGCTAATCCTATAGATGAAAACTTCTGATAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAAAAGGTTCTGAAACAGTTA</pcr_primer_p1>
		<pcr_primer_p2>ACATAAAAAGGTGTCAAATGTGT</pcr_primer_p2>
		<pcr_amplicon_size>639</pcr_amplicon_size>
		<canonical_amplicon>AGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGT</canonical_amplicon>
		<polymorphic_amplicon>AGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCRAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25150</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>786674</contig_pos>
        <strand></strand>
        <context>tcagcgcraa[T/A]acacttgaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAA</left_flank>
        <right_flank>ACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTAGAATCCCTAGAGTCCCGGAAATTTCACTTACCGTTAAATATAGTAAAGAGTTTTGTAGAGAAAAAGAAGAAGAAGATGGGAAAATGAACATTCTGGAAAAAAAATCTAAAAATTGAAAAAAAAAATCGAAAAAAGAGCACTACAATTCGATATTTAGAGAAGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGTATCCAAAAGTGGGTCAAAATTTGGGAGTAAAAGGATTAGAATTTTAAATCCAGAAAATAAGTAGAATAGGAGGTTTTTATGGGTTATGGTGGTGTCCTTGAACTGTATTTGCATAATAATATAGCTATGGACCACACCTTGTTATGCAACACATTCGTCATTGCTAATCCTATAGATGAAAACTTCTGATAAGATCC</canonical>
            <polymorphic>CCTAGAATCCCTAGAGTCCCGGAAATTTCACTTACCGTTAAATATAGTAAAGAGTTTTGTAGAGAAAAAGAAGAAGAAGATGGGAAAATGAACATTCTGGAAAAAAAATCTAAAAATTGAAAAAAAAAATCGAAAAAAGAGCACTACAATTCGATATTTAGAGAAGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAAWACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGTATCCAAAAGTGGGTCAAAATTTGGGAGTAAAAGGATTAGAATTTTAAATCCAGAAAATAAGTAGAATAGGAGGTTTTTATGGGTTATGGTGGTGTCCTTGAACTGTATTTGCATAATAATATAGCTATGGACCACACCTTGTTATGCAACACATTCGTCATTGCTAATCCTATAGATGAAAACTTCTGATAAGATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAAAGGTTCTGAAACAGTTA</pcr_primer_p1>
		<pcr_primer_p2>ACATAAAAAGGTGTCAAATGTGT</pcr_primer_p2>
		<pcr_amplicon_size>639</pcr_amplicon_size>
		<canonical_amplicon>AGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGT</canonical_amplicon>
		<polymorphic_amplicon>AGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAAWACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25151</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>786716</contig_pos>
        <strand></strand>
        <context>aaagtccatt[T/A]ttycagtatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATT</left_flank>
        <right_flank>TTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAGTAAAGAGTTTTGTAGAGAAAAAGAAGAAGAAGATGGGAAAATGAACATTCTGGAAAAAAAATCTAAAAATTGAAAAAAAAAATCGAAAAAAGAGCACTACAATTCGATATTTAGAGAAGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGTATCCAAAAGTGGGTCAAAATTTGGGAGTAAAAGGATTAGAATTTTAAATCCAGAAAATAAGTAGAATAGGAGGTTTTTATGGGTTATGGTGGTGTCCTTGAACTGTATTTGCATAATAATATAGCTATGGACCACACCTTGTTATGCAACACATTCGTCATTGCTAATCCTATAGATGAAAACTTCTGATAAGATCCAAAAAAGGCCGCCTGTGGCCAGAAAATCTAAAGGAAATGGGC</canonical>
            <polymorphic>TATAGTAAAGAGTTTTGTAGAGAAAAAGAAGAAGAAGATGGGAAAATGAACATTCTGGAAAAAAAATCTAAAAATTGAAAAAAAAAATCGAAAAAAGAGCACTACAATTCGATATTTAGAGAAGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTWTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGTATCCAAAAGTGGGTCAAAATTTGGGAGTAAAAGGATTAGAATTTTAAATCCAGAAAATAAGTAGAATAGGAGGTTTTTATGGGTTATGGTGGTGTCCTTGAACTGTATTTGCATAATAATATAGCTATGGACCACACCTTGTTATGCAACACATTCGTCATTGCTAATCCTATAGATGAAAACTTCTGATAAGATCCAAAAAAGGCCGCCTGTGGCCAGAAAATCTAAAGGAAATGGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAAAGGTTCTGAAACAGTTA</pcr_primer_p1>
		<pcr_primer_p2>ACATAAAAAGGTGTCAAATGTGT</pcr_primer_p2>
		<pcr_amplicon_size>639</pcr_amplicon_size>
		<canonical_amplicon>AGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGT</canonical_amplicon>
		<polymorphic_amplicon>AGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTWTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25152</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>786719</contig_pos>
        <strand></strand>
        <context>gtccattwtt[T/C]cagtattttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTT</left_flank>
        <right_flank>CAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGAT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTAAAGAGTTTTGTAGAGAAAAAGAAGAAGAAGATGGGAAAATGAACATTCTGGAAAAAAAATCTAAAAATTGAAAAAAAAAATCGAAAAAAGAGCACTACAATTCGATATTTAGAGAAGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGTATCCAAAAGTGGGTCAAAATTTGGGAGTAAAAGGATTAGAATTTTAAATCCAGAAAATAAGTAGAATAGGAGGTTTTTATGGGTTATGGTGGTGTCCTTGAACTGTATTTGCATAATAATATAGCTATGGACCACACCTTGTTATGCAACACATTCGTCATTGCTAATCCTATAGATGAAAACTTCTGATAAGATCCAAAAAAGGCCGCCTGTGGCCAGAAAATCTAAAGGAAATGGGCCCA</canonical>
            <polymorphic>AGTAAAGAGTTTTGTAGAGAAAAAGAAGAAGAAGATGGGAAAATGAACATTCTGGAAAAAAAATCTAAAAATTGAAAAAAAAAATCGAAAAAAGAGCACTACAATTCGATATTTAGAGAAGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTYCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGTATCCAAAAGTGGGTCAAAATTTGGGAGTAAAAGGATTAGAATTTTAAATCCAGAAAATAAGTAGAATAGGAGGTTTTTATGGGTTATGGTGGTGTCCTTGAACTGTATTTGCATAATAATATAGCTATGGACCACACCTTGTTATGCAACACATTCGTCATTGCTAATCCTATAGATGAAAACTTCTGATAAGATCCAAAAAAGGCCGCCTGTGGCCAGAAAATCTAAAGGAAATGGGCCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAAAGGTTCTGAAACAGTTA</pcr_primer_p1>
		<pcr_primer_p2>ACATAAAAAGGTGTCAAATGTGT</pcr_primer_p2>
		<pcr_amplicon_size>639</pcr_amplicon_size>
		<canonical_amplicon>AGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTTCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGT</canonical_amplicon>
		<polymorphic_amplicon>AGAAAAAGGTTCTGAAACAGTTATAAATGATTTAAAATAGTCTGAAAATATGAAAAATTACAAAAAACTACCCTAGAAATCCATTTTTGAGCAATTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTGGAATTTTGCACTACCAACCTAACTACCCGGGTTCGGATCCACCTGGGACTAAATTTTTTTGCTAATTTTTTCGAGCGTTTTTAGACTATTCTGGAGCATTCTAGATGTCGAAAATCGAGATTTTCAAAAAAATCTCATTTTTTGAAAATTTTCGAAAAAATACTTTTTTCAAAATTTGTGGAAAATATGAATTTCAGCGCGAATACACTTGAAAAATGTGGAAAAAATACTCTGCAAAGTCCATTTTTYCAGTATTTTTAAGCTTTTTTCCAAAAAATGCAAAAATGGCGCAGTGGGATTTTCGAGATTTCCACCACCAATCTAACAACCCGGGTTCAAATCCATTTAGTGGCAAAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25153</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>787324</contig_pos>
        <strand>+</strand>
        <context>AAATCGAGAA[A/G]AGGARGRGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCAGAATCCTGAATCTATTTAGAAATCGAAATGAAAAGGAAATCGAGAA</left_flank>
        <right_flank>AGGAAGGGGTCATTTTGGGGGTCATTTGGAGGGGAGGAGGAGACAGAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGTATCCAAAAGTGGGTCAAAATTTGGGAGTAAAAGGATTAGAATTTTAAATCCAGAAAATAAGTAGAATAGGAGGTTTTTATGGGTTATGGTGGTGTCCTTGAACTGTATTTGCATAATAATATAGCTATGGACCACACCTTGTTATGCAACACATTCGTCATTGCTAATCCTATAGATGAAAACTTCTGATAAGATCCAAAAAAGGCCGCCTGTGGCCAGAAAATCTAAAGGAAATGGGCCCAAAATGGCAAAAATGAGTTTAGACGGGGTTTTTCAAGATTCTGGGATTCTGAATTCTCAGAATCCTGAATCTATTTAGAAATCGAAATGAAAAGGAAATCGAGAAAAGGAAGGGGTCATTTTGGGGGTCATTTGGAGGGGAGGAGGAGACAGAAATGTGACAGTTTCGAGGGGGAAGGGGGCAATTTATTTAATAGCTATGTTGGTTTAGGTATCCACTTTTTGAGGAGGTATATCTCAACAACTATGGTAGCTAGCAGGAAAGTGTTAATTGCGGAAATGTGTAAAATTTTACGCTCTACATTTTTGCAATTTACAAAAAATGGATAAGCATCCTTGTTTTTGTGATATGTGCTTTTATAAATGGCGCTTTCTCAAGAGGGCGCCGGAAAGGCCAAATTTAAAGGCGCATATCTCAAAAACTACTGTAATTACAAAAAATTTGTCATCTAAAAAAATGTTTGAAATTTTATGTTCTACATTTTTGCAGTTAACCACTGTTGGATAGTAATCGTAGTTTTCGAGATATGCGCCTTTAAAGTTTGACTTCTCTCCGCCGCCGCCGCTCCCACCACAGGAGCGGAGTGTATGCAAAGTTTAAAGCCGT</canonical>
            <polymorphic>AAACGTTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGTATCCAAAAGTGGGTCAAAATTTGGGAGTAAAAGGATTAGAATTTTAAATCCAGAAAATAAGTAGAATAGGAGGTTTTTATGGGTTATGGTGGTGTCCTTGAACTGTATTTGCATAATAATATAGCTATGGACCACACCTTGTTATGCAACACATTCGTCATTGCTAATCCTATAGATGAAAACTTCTGATAAGATCCAAAAAAGGCCGCCTGTGGCCAGAAAATCTAAAGGAAATGGGCCCAAAATGGCAAAAATGAGTTTAGACGGGGTTTTTCAAGATTCTGGGATTCTGAATTCTCAGAATCCTGAATCTATTTAGAAATCGAAATGAAAAGGAAATCGAGAARAGGAAGGGGTCATTTTGGGGGTCATTTGGAGGGGAGGAGGAGACAGAAATGTGACAGTTTCGAGGGGGAAGGGGGCAATTTATTTAATAGCTATGTTGGTTTAGGTATCCACTTTTTGAGGAGGTATATCTCAACAACTATGGTAGCTAGCAGGAAAGTGTTAATTGCGGAAATGTGTAAAATTTTACGCTCTACATTTTTGCAATTTACAAAAAATGGATAAGCATCCTTGTTTTTGTGATATGTGCTTTTATAAATGGCGCTTTCTCAAGAGGGCGCCGGAAAGGCCAAATTTAAAGGCGCATATCTCAAAAACTACTGTAATTACAAAAAATTTGTCATCTAAAAAAATGTTTGAAATTTTATGTTCTACATTTTTGCAGTTAACCACTGTTGGATAGTAATCGTAGTTTTCGAGATATGCGCCTTTAAAGTTTGACTTCTCTCCGCCGCCGCCGCTCCCACCACAGGAGCGGAGTGTATGCAAAGTTTAAAGCCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTGCTAATCCTATAGATGAAA</pcr_primer_p1>
		<pcr_primer_p2>AACTGTCACATTTCTGTCTCCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCATTGCTAATCCTATAGATGAAAACTTCTGATAAGATCCAAAAAAGGCCGCCTGTGGCCAGAAAATCTAAAGGAAATGGGCCCAAAATGGCAAAAATGAGTTTAGACGGGGTTTTTCAAGATTCTGGGATTCTGAATTCTCAGAATCCTGAATCTATTTAGAAATCGAAATGAAAAGGAAATCGAGAAAAGGAAGGGGTCATTTTGGGGGTCATTTGGAGGGGAGGAGGAGACAGAAATGTGACAGTT</canonical_amplicon>
		<polymorphic_amplicon>TCATTGCTAATCCTATAGATGAAAACTTCTGATAAGATCCAAAAAAGGCCGCCTGTGGCCAGAAAATCTAAAGGAAATGGGCCCAAAATGGCAAAAATGAGTTTAGACGGGGTTTTTCAAGATTCTGGGATTCTGAATTCTCAGAATCCTGAATCTATTTAGAAATCGAAATGAAAAGGAAATCGAGAARAGGAAGGGGTCATTTTGGGGGTCATTTGGAGGGGAGGAGGAGACAGAAATGTGACAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25154</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>787329</contig_pos>
        <strand>+</strand>
        <context>GAGAARAGGA[A/G]GRGGTCATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCCTGAATCTATTTAGAAATCGAAATGAAAAGGAAATCGAGAAAAGGA</left_flank>
        <right_flank>GGGGTCATTTTGGGGGTCATTTGGAGGGGAGGAGGAGACAGAAATGTGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGTATCCAAAAGTGGGTCAAAATTTGGGAGTAAAAGGATTAGAATTTTAAATCCAGAAAATAAGTAGAATAGGAGGTTTTTATGGGTTATGGTGGTGTCCTTGAACTGTATTTGCATAATAATATAGCTATGGACCACACCTTGTTATGCAACACATTCGTCATTGCTAATCCTATAGATGAAAACTTCTGATAAGATCCAAAAAAGGCCGCCTGTGGCCAGAAAATCTAAAGGAAATGGGCCCAAAATGGCAAAAATGAGTTTAGACGGGGTTTTTCAAGATTCTGGGATTCTGAATTCTCAGAATCCTGAATCTATTTAGAAATCGAAATGAAAAGGAAATCGAGAAAAGGAAGGGGTCATTTTGGGGGTCATTTGGAGGGGAGGAGGAGACAGAAATGTGACAGTTTCGAGGGGGAAGGGGGCAATTTATTTAATAGCTATGTTGGTTTAGGTATCCACTTTTTGAGGAGGTATATCTCAACAACTATGGTAGCTAGCAGGAAAGTGTTAATTGCGGAAATGTGTAAAATTTTACGCTCTACATTTTTGCAATTTACAAAAAATGGATAAGCATCCTTGTTTTTGTGATATGTGCTTTTATAAATGGCGCTTTCTCAAGAGGGCGCCGGAAAGGCCAAATTTAAAGGCGCATATCTCAAAAACTACTGTAATTACAAAAAATTTGTCATCTAAAAAAATGTTTGAAATTTTATGTTCTACATTTTTGCAGTTAACCACTGTTGGATAGTAATCGTAGTTTTCGAGATATGCGCCTTTAAAGTTTGACTTCTCTCCGCCGCCGCCGCTCCCACCACAGGAGCGGAGTGTATGCAAAGTTTAAAGCCGTATATC</canonical>
            <polymorphic>TTTTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGTATCCAAAAGTGGGTCAAAATTTGGGAGTAAAAGGATTAGAATTTTAAATCCAGAAAATAAGTAGAATAGGAGGTTTTTATGGGTTATGGTGGTGTCCTTGAACTGTATTTGCATAATAATATAGCTATGGACCACACCTTGTTATGCAACACATTCGTCATTGCTAATCCTATAGATGAAAACTTCTGATAAGATCCAAAAAAGGCCGCCTGTGGCCAGAAAATCTAAAGGAAATGGGCCCAAAATGGCAAAAATGAGTTTAGACGGGGTTTTTCAAGATTCTGGGATTCTGAATTCTCAGAATCCTGAATCTATTTAGAAATCGAAATGAAAAGGAAATCGAGAAAAGGARGGGGTCATTTTGGGGGTCATTTGGAGGGGAGGAGGAGACAGAAATGTGACAGTTTCGAGGGGGAAGGGGGCAATTTATTTAATAGCTATGTTGGTTTAGGTATCCACTTTTTGAGGAGGTATATCTCAACAACTATGGTAGCTAGCAGGAAAGTGTTAATTGCGGAAATGTGTAAAATTTTACGCTCTACATTTTTGCAATTTACAAAAAATGGATAAGCATCCTTGTTTTTGTGATATGTGCTTTTATAAATGGCGCTTTCTCAAGAGGGCGCCGGAAAGGCCAAATTTAAAGGCGCATATCTCAAAAACTACTGTAATTACAAAAAATTTGTCATCTAAAAAAATGTTTGAAATTTTATGTTCTACATTTTTGCAGTTAACCACTGTTGGATAGTAATCGTAGTTTTCGAGATATGCGCCTTTAAAGTTTGACTTCTCTCCGCCGCCGCCGCTCCCACCACAGGAGCGGAGTGTATGCAAAGTTTAAAGCCGTATATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTGCTAATCCTATAGATGAAA</pcr_primer_p1>
		<pcr_primer_p2>AACTGTCACATTTCTGTCTCCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCATTGCTAATCCTATAGATGAAAACTTCTGATAAGATCCAAAAAAGGCCGCCTGTGGCCAGAAAATCTAAAGGAAATGGGCCCAAAATGGCAAAAATGAGTTTAGACGGGGTTTTTCAAGATTCTGGGATTCTGAATTCTCAGAATCCTGAATCTATTTAGAAATCGAAATGAAAAGGAAATCGAGAAAAGGAAGGGGTCATTTTGGGGGTCATTTGGAGGGGAGGAGGAGACAGAAATGTGACAGTT</canonical_amplicon>
		<polymorphic_amplicon>TCATTGCTAATCCTATAGATGAAAACTTCTGATAAGATCCAAAAAAGGCCGCCTGTGGCCAGAAAATCTAAAGGAAATGGGCCCAAAATGGCAAAAATGAGTTTAGACGGGGTTTTTCAAGATTCTGGGATTCTGAATTCTCAGAATCCTGAATCTATTTAGAAATCGAAATGAAAAGGAAATCGAGAAAAGGARGGGGTCATTTTGGGGGTCATTTGGAGGGGAGGAGGAGACAGAAATGTGACAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25155</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>787331</contig_pos>
        <strand>+</strand>
        <context>GAARAGGARG[A/G]GGTCATTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCTGAATCTATTTAGAAATCGAAATGAAAAGGAAATCGAGAAAAGGAAG</left_flank>
        <right_flank>GGTCATTTTGGGGGTCATTTGGAGGGGAGGAGGAGACAGAAATGTGACAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGTATCCAAAAGTGGGTCAAAATTTGGGAGTAAAAGGATTAGAATTTTAAATCCAGAAAATAAGTAGAATAGGAGGTTTTTATGGGTTATGGTGGTGTCCTTGAACTGTATTTGCATAATAATATAGCTATGGACCACACCTTGTTATGCAACACATTCGTCATTGCTAATCCTATAGATGAAAACTTCTGATAAGATCCAAAAAAGGCCGCCTGTGGCCAGAAAATCTAAAGGAAATGGGCCCAAAATGGCAAAAATGAGTTTAGACGGGGTTTTTCAAGATTCTGGGATTCTGAATTCTCAGAATCCTGAATCTATTTAGAAATCGAAATGAAAAGGAAATCGAGAAAAGGAAGGGGTCATTTTGGGGGTCATTTGGAGGGGAGGAGGAGACAGAAATGTGACAGTTTCGAGGGGGAAGGGGGCAATTTATTTAATAGCTATGTTGGTTTAGGTATCCACTTTTTGAGGAGGTATATCTCAACAACTATGGTAGCTAGCAGGAAAGTGTTAATTGCGGAAATGTGTAAAATTTTACGCTCTACATTTTTGCAATTTACAAAAAATGGATAAGCATCCTTGTTTTTGTGATATGTGCTTTTATAAATGGCGCTTTCTCAAGAGGGCGCCGGAAAGGCCAAATTTAAAGGCGCATATCTCAAAAACTACTGTAATTACAAAAAATTTGTCATCTAAAAAAATGTTTGAAATTTTATGTTCTACATTTTTGCAGTTAACCACTGTTGGATAGTAATCGTAGTTTTCGAGATATGCGCCTTTAAAGTTTGACTTCTCTCCGCCGCCGCCGCTCCCACCACAGGAGCGGAGTGTATGCAAAGTTTAAAGCCGTATATCTC</canonical>
            <polymorphic>TTTGCTCCTTTTTAGAGCACTTTAGACTATTTTAGAAGATTCTAGAACTCAAATTATGTGAAAAAAATTCCCAGAAGTTCAATTTTCGCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGTATCCAAAAGTGGGTCAAAATTTGGGAGTAAAAGGATTAGAATTTTAAATCCAGAAAATAAGTAGAATAGGAGGTTTTTATGGGTTATGGTGGTGTCCTTGAACTGTATTTGCATAATAATATAGCTATGGACCACACCTTGTTATGCAACACATTCGTCATTGCTAATCCTATAGATGAAAACTTCTGATAAGATCCAAAAAAGGCCGCCTGTGGCCAGAAAATCTAAAGGAAATGGGCCCAAAATGGCAAAAATGAGTTTAGACGGGGTTTTTCAAGATTCTGGGATTCTGAATTCTCAGAATCCTGAATCTATTTAGAAATCGAAATGAAAAGGAAATCGAGAAAAGGAAGRGGTCATTTTGGGGGTCATTTGGAGGGGAGGAGGAGACAGAAATGTGACAGTTTCGAGGGGGAAGGGGGCAATTTATTTAATAGCTATGTTGGTTTAGGTATCCACTTTTTGAGGAGGTATATCTCAACAACTATGGTAGCTAGCAGGAAAGTGTTAATTGCGGAAATGTGTAAAATTTTACGCTCTACATTTTTGCAATTTACAAAAAATGGATAAGCATCCTTGTTTTTGTGATATGTGCTTTTATAAATGGCGCTTTCTCAAGAGGGCGCCGGAAAGGCCAAATTTAAAGGCGCATATCTCAAAAACTACTGTAATTACAAAAAATTTGTCATCTAAAAAAATGTTTGAAATTTTATGTTCTACATTTTTGCAGTTAACCACTGTTGGATAGTAATCGTAGTTTTCGAGATATGCGCCTTTAAAGTTTGACTTCTCTCCGCCGCCGCCGCTCCCACCACAGGAGCGGAGTGTATGCAAAGTTTAAAGCCGTATATCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTGCTAATCCTATAGATGAAA</pcr_primer_p1>
		<pcr_primer_p2>AAACTGTCACATTTCTGTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCATTGCTAATCCTATAGATGAAAACTTCTGATAAGATCCAAAAAAGGCCGCCTGTGGCCAGAAAATCTAAAGGAAATGGGCCCAAAATGGCAAAAATGAGTTTAGACGGGGTTTTTCAAGATTCTGGGATTCTGAATTCTCAGAATCCTGAATCTATTTAGAAATCGAAATGAAAAGGAAATCGAGAAAAGGAAGGGGTCATTTTGGGGGTCATTTGGAGGGGAGGAGGAGACAGAAATGTGACAGTTT</canonical_amplicon>
		<polymorphic_amplicon>TCATTGCTAATCCTATAGATGAAAACTTCTGATAAGATCCAAAAAAGGCCGCCTGTGGCCAGAAAATCTAAAGGAAATGGGCCCAAAATGGCAAAAATGAGTTTAGACGGGGTTTTTCAAGATTCTGGGATTCTGAATTCTCAGAATCCTGAATCTATTTAGAAATCGAAATGAAAAGGAAATCGAGAAAAGGAAGRGGTCATTTTGGGGGTCATTTGGAGGGGAGGAGGAGACAGAAATGTGACAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25156</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>787418</contig_pos>
        <strand>+</strand>
        <context>TTAATAGCTA[C/T]GKTGGTTTAg</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGAAATGTGACAGTTTCGAGGGGGAAGGGGGCAATTTATTTAATAGCTA</left_flank>
        <right_flank>GTTGGTTTAGGTATCCACTTTTTGAGGAGGTATATCTCAACAACTATGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGTATCCAAAAGTGGGTCAAAATTTGGGAGTAAAAGGATTAGAATTTTAAATCCAGAAAATAAGTAGAATAGGAGGTTTTTATGGGTTATGGTGGTGTCCTTGAACTGTATTTGCATAATAATATAGCTATGGACCACACCTTGTTATGCAACACATTCGTCATTGCTAATCCTATAGATGAAAACTTCTGATAAGATCCAAAAAAGGCCGCCTGTGGCCAGAAAATCTAAAGGAAATGGGCCCAAAATGGCAAAAATGAGTTTAGACGGGGTTTTTCAAGATTCTGGGATTCTGAATTCTCAGAATCCTGAATCTATTTAGAAATCGAAATGAAAAGGAAATCGAGAAAAGGAAGGGGTCATTTTGGGGGTCATTTGGAGGGGAGGAGGAGACAGAAATGTGACAGTTTCGAGGGGGAAGGGGGCAATTTATTTAATAGCTATGTTGGTTTAGGTATCCACTTTTTGAGGAGGTATATCTCAACAACTATGGTAGCTAGCAGGAAAGTGTTAATTGCGGAAATGTGTAAAATTTTACGCTCTACATTTTTGCAATTTACAAAAAATGGATAAGCATCCTTGTTTTTGTGATATGTGCTTTTATAAATGGCGCTTTCTCAAGAGGGCGCCGGAAAGGCCAAATTTAAAGGCGCATATCTCAAAAACTACTGTAATTACAAAAAATTTGTCATCTAAAAAAATGTTTGAAATTTTATGTTCTACATTTTTGCAGTTAACCACTGTTGGATAGTAATCGTAGTTTTCGAGATATGCGCCTTTAAAGTTTGACTTCTCTCCGCCGCCGCCGCTCCCACCACAGGAGCGGAGTGTATGCAAAGTTTAAAGCCGTATATCTCGAAAACTACAATAGTTGTCAACAAATTGTTGACTAACTAAATGTGTAAAATGTTCTACATTTTTTTTTGAGCTATCTTGTTTTTAAC</canonical>
            <polymorphic>GCTAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGTATCCAAAAGTGGGTCAAAATTTGGGAGTAAAAGGATTAGAATTTTAAATCCAGAAAATAAGTAGAATAGGAGGTTTTTATGGGTTATGGTGGTGTCCTTGAACTGTATTTGCATAATAATATAGCTATGGACCACACCTTGTTATGCAACACATTCGTCATTGCTAATCCTATAGATGAAAACTTCTGATAAGATCCAAAAAAGGCCGCCTGTGGCCAGAAAATCTAAAGGAAATGGGCCCAAAATGGCAAAAATGAGTTTAGACGGGGTTTTTCAAGATTCTGGGATTCTGAATTCTCAGAATCCTGAATCTATTTAGAAATCGAAATGAAAAGGAAATCGAGAAAAGGAAGGGGTCATTTTGGGGGTCATTTGGAGGGGAGGAGGAGACAGAAATGTGACAGTTTCGAGGGGGAAGGGGGCAATTTATTTAATAGCTAYGTTGGTTTAGGTATCCACTTTTTGAGGAGGTATATCTCAACAACTATGGTAGCTAGCAGGAAAGTGTTAATTGCGGAAATGTGTAAAATTTTACGCTCTACATTTTTGCAATTTACAAAAAATGGATAAGCATCCTTGTTTTTGTGATATGTGCTTTTATAAATGGCGCTTTCTCAAGAGGGCGCCGGAAAGGCCAAATTTAAAGGCGCATATCTCAAAAACTACTGTAATTACAAAAAATTTGTCATCTAAAAAAATGTTTGAAATTTTATGTTCTACATTTTTGCAGTTAACCACTGTTGGATAGTAATCGTAGTTTTCGAGATATGCGCCTTTAAAGTTTGACTTCTCTCCGCCGCCGCCGCTCCCACCACAGGAGCGGAGTGTATGCAAAGTTTAAAGCCGTATATCTCGAAAACTACAATAGTTGTCAACAAATTGTTGACTAACTAAATGTGTAAAATGTTCTACATTTTTTTTTGAGCTATCTTGTTTTTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGAGACAGAAATGTGACAG</pcr_primer_p1>
		<pcr_primer_p2>CGAAGTTAAAAACAAGATAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>562</pcr_amplicon_size>
		<canonical_amplicon>GAGGAGACAGAAATGTGACAGTTTCGAGGGGGAAGGGGGCAATTTATTTAATAGCTATGTTGGTTTAGGTATCCACTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAGGAGACAGAAATGTGACAGTTTCGAGGGGGAAGGGGGCAATTTATTTAATAGCTAYGTTGGTTTAGGTATCCACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25157</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>787420</contig_pos>
        <strand>+</strand>
        <context>AATAGCTAYG[G/T]TGGTTTAggt</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAATGTGACAGTTTCGAGGGGGAAGGGGGCAATTTATTTAATAGCTATG</left_flank>
        <right_flank>TGGTTTAGGTATCCACTTTTTGAGGAGGTATATCTCAACAACTATGGTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGTATCCAAAAGTGGGTCAAAATTTGGGAGTAAAAGGATTAGAATTTTAAATCCAGAAAATAAGTAGAATAGGAGGTTTTTATGGGTTATGGTGGTGTCCTTGAACTGTATTTGCATAATAATATAGCTATGGACCACACCTTGTTATGCAACACATTCGTCATTGCTAATCCTATAGATGAAAACTTCTGATAAGATCCAAAAAAGGCCGCCTGTGGCCAGAAAATCTAAAGGAAATGGGCCCAAAATGGCAAAAATGAGTTTAGACGGGGTTTTTCAAGATTCTGGGATTCTGAATTCTCAGAATCCTGAATCTATTTAGAAATCGAAATGAAAAGGAAATCGAGAAAAGGAAGGGGTCATTTTGGGGGTCATTTGGAGGGGAGGAGGAGACAGAAATGTGACAGTTTCGAGGGGGAAGGGGGCAATTTATTTAATAGCTATGTTGGTTTAGGTATCCACTTTTTGAGGAGGTATATCTCAACAACTATGGTAGCTAGCAGGAAAGTGTTAATTGCGGAAATGTGTAAAATTTTACGCTCTACATTTTTGCAATTTACAAAAAATGGATAAGCATCCTTGTTTTTGTGATATGTGCTTTTATAAATGGCGCTTTCTCAAGAGGGCGCCGGAAAGGCCAAATTTAAAGGCGCATATCTCAAAAACTACTGTAATTACAAAAAATTTGTCATCTAAAAAAATGTTTGAAATTTTATGTTCTACATTTTTGCAGTTAACCACTGTTGGATAGTAATCGTAGTTTTCGAGATATGCGCCTTTAAAGTTTGACTTCTCTCCGCCGCCGCCGCTCCCACCACAGGAGCGGAGTGTATGCAAAGTTTAAAGCCGTATATCTCGAAAACTACAATAGTTGTCAACAAATTGTTGACTAACTAAATGTGTAAAATGTTCTACATTTTTTTTTGAGCTATCTTGTTTTTAACTT</canonical>
            <polymorphic>TAATTTTTCAAAAAATGTTTTCTGAATGTTTCAAACACATTTGACACCTTTTTATGTATCCAAAAGTGGGTCAAAATTTGGGAGTAAAAGGATTAGAATTTTAAATCCAGAAAATAAGTAGAATAGGAGGTTTTTATGGGTTATGGTGGTGTCCTTGAACTGTATTTGCATAATAATATAGCTATGGACCACACCTTGTTATGCAACACATTCGTCATTGCTAATCCTATAGATGAAAACTTCTGATAAGATCCAAAAAAGGCCGCCTGTGGCCAGAAAATCTAAAGGAAATGGGCCCAAAATGGCAAAAATGAGTTTAGACGGGGTTTTTCAAGATTCTGGGATTCTGAATTCTCAGAATCCTGAATCTATTTAGAAATCGAAATGAAAAGGAAATCGAGAAAAGGAAGGGGTCATTTTGGGGGTCATTTGGAGGGGAGGAGGAGACAGAAATGTGACAGTTTCGAGGGGGAAGGGGGCAATTTATTTAATAGCTATGKTGGTTTAGGTATCCACTTTTTGAGGAGGTATATCTCAACAACTATGGTAGCTAGCAGGAAAGTGTTAATTGCGGAAATGTGTAAAATTTTACGCTCTACATTTTTGCAATTTACAAAAAATGGATAAGCATCCTTGTTTTTGTGATATGTGCTTTTATAAATGGCGCTTTCTCAAGAGGGCGCCGGAAAGGCCAAATTTAAAGGCGCATATCTCAAAAACTACTGTAATTACAAAAAATTTGTCATCTAAAAAAATGTTTGAAATTTTATGTTCTACATTTTTGCAGTTAACCACTGTTGGATAGTAATCGTAGTTTTCGAGATATGCGCCTTTAAAGTTTGACTTCTCTCCGCCGCCGCCGCTCCCACCACAGGAGCGGAGTGTATGCAAAGTTTAAAGCCGTATATCTCGAAAACTACAATAGTTGTCAACAAATTGTTGACTAACTAAATGTGTAAAATGTTCTACATTTTTTTTTGAGCTATCTTGTTTTTAACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGAGACAGAAATGTGACAG</pcr_primer_p1>
		<pcr_primer_p2>CGAAGTTAAAAACAAGATAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>562</pcr_amplicon_size>
		<canonical_amplicon>GAGGAGACAGAAATGTGACAGTTTCGAGGGGGAAGGGGGCAATTTATTTAATAGCTATGTTGGTTTAGGTATCCACTTTTTG</canonical_amplicon>
		<polymorphic_amplicon>GAGGAGACAGAAATGTGACAGTTTCGAGGGGGAAGGGGGCAATTTATTTAATAGCTATGKTGGTTTAGGTATCCACTTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25158</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>805894</contig_pos>
        <strand>+</strand>
        <context>GCCAATTCAG[C/T]ATACAGTAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATCCTCGAGTTTCAGAAGCAACCAAAGGATTTGATCGAGCCAATTCAG</left_flank>
        <right_flank>ATACAGTAAGAAAATGAGGATTACTGCGAAATTCTGGAATTCGCAATTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAGTATTTCGTTTGGTGCAAAGAGAGAAAGGCCGATTATGATGTTGTCATATTCTCTGAAAACGCGAATATCCAAATTGGAACATGGCTGAAATTGAATTTATCACTGGACCAGCTATCTCAAGAGTATCTGGAATGTCCCAATTTTACAGTAATCCCATATCCAGTTCATACAACTTTCCCATCTAAAAATAACCAATTATGCTTAACATTGGAGTTAGATATTCCAGAAGGTTCACAGAACCTTTCACATCCATTTGTGGGAGAGATTATGTAAGTCTATCTGTGTGTCAAAGTGTCTAGATGTCCCATTTTTTCAGAAATATCATTGAACCATTTAGACAAACCGGGAGATATTCGATAACTATAATGAGGAAAAAAATCGGAACACAAATTGGATGGTTCTTGACAGCGAAACAATTGGTGACATTTTTTTTTGAAAAATACAGTAATCCTCGAGTTTCAGAAGCAACCAAAGGATTTGATCGAGCCAATTCAGTATACAGTAAGAAAATGAGGATTACTGCGAAATTCTGGAATTCGCAATTTTTCAGATTAATCTTCAACATGTTGCGAGACATCATATATCAAGGAGAGATGTGGTGAGAATATATTGTCCCAACTGCACTAGAAATGCGTCAAGACACTCAGACGTATTTTCAAAGAACTGATACGTTGGCGCATTTCTGGTGCCTTGGCGCATTTGCCGTAACTGGACGCTTTGCTGGTTGTCCAAACATTTTTTTTTGATTCCGTGACGCGTTTCTTGTGCATTCGCGCGTTATTAGTGCTCCTTCTTTCAGCTCGAACCAGATTCTCCACCCCAAACTGCACCCAGATATTCTCGTAATCAGCACCAGACCGACATTCTGGGCTCACAATTTGATACGTTGCTCAATACTGTAGGACTGAAAAAAAAACATTTGGACGTCTGGAAATAAGAATTTTGCAGACTAACCGACCTTCTACAAGTTCCAATCAACCTGGAAATTGGAATCCA</canonical>
            <polymorphic>TAAGTATTTCGTTTGGTGCAAAGAGAGAAAGGCCGATTATGATGTTGTCATATTCTCTGAAAACGCGAATATCCAAATTGGAACATGGCTGAAATTGAATTTATCACTGGACCAGCTATCTCAAGAGTATCTGGAATGTCCCAATTTTACAGTAATCCCATATCCAGTTCATACAACTTTCCCATCTAAAAATAACCAATTATGCTTAACATTGGAGTTAGATATTCCAGAAGGTTCACAGAACCTTTCACATCCATTTGTGGGAGAGATTATGTAAGTCTATCTGTGTGTCAAAGTGTCTAGATGTCCCATTTTTTCAGAAATATCATTGAACCATTTAGACAAACCGGGAGATATTCGATAACTATAATGAGGAAAAAAATCGGAACACAAATTGGATGGTTCTTGACAGCGAAACAATTGGTGACATTTTTTTTTGAAAAATACAGTAATCCTCGAGTTTCAGAAGCAACCAAAGGATTTGATCGAGCCAATTCAGYATACAGTAAGAAAATGAGGATTACTGCGAAATTCTGGAATTCGCAATTTTTCAGATTAATCTTCAACATGTTGCGAGACATCATATATCAAGGAGAGATGTGGTGAGAATATATTGTCCCAACTGCACTAGAAATGCGTCAAGACACTCAGACGTATTTTCAAAGAACTGATACGTTGGCGCATTTCTGGTGCCTTGGCGCATTTGCCGTAACTGGACGCTTTGCTGGTTGTCCAAACATTTTTTTTTGATTCCGTGACGCGTTTCTTGTGCATTCGCGCGTTATTAGTGCTCCTTCTTTCAGCTCGAACCAGATTCTCCACCCCAAACTGCACCCAGATATTCTCGTAATCAGCACCAGACCGACATTCTGGGCTCACAATTTGATACGTTGCTCAATACTGTAGGACTGAAAAAAAAACATTTGGACGTCTGGAAATAAGAATTTTGCAGACTAACCGACCTTCTACAAGTTCCAATCAACCTGGAAATTGGAATCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTATAC</site>
                <isoschizomers>
                    <enzyme>BssNAI</enzyme>
                    <enzyme>Bst1107I</enzyme>
                    <enzyme>BstZ17I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 265 236</canonical_bands>
                <polymorphic_bands>764 236</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAATACAGTAATCCTCGAGTT</pcr_primer_p1>
		<pcr_primer_p2>CAACGTATCAGTTCTTTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GAAAAATACAGTAATCCTCGAGTTTCAGAAGCAACCAAAGGATTTGATCGAGCCAATTCAGTATACAGTAAGAAAATGAGGATTACTGCGAAATTCTGGAATTCGCAATTTTTCAGATTAATCTTCAACATGTTGCGAGACATCATATATCAAGGAGAGATGTGGTGAGAATATATTGTCCCAACTGCACTAGAAATGCGTCAAGACACTCAGACGTATTTTCAAAGAACTGATACGTTG</canonical_amplicon>
		<polymorphic_amplicon>GAAAAATACAGTAATCCTCGAGTTTCAGAAGCAACCAAAGGATTTGATCGAGCCAATTCAGYATACAGTAAGAAAATGAGGATTACTGCGAAATTCTGGAATTCGCAATTTTTCAGATTAATCTTCAACATGTTGCGAGACATCATATATCAAGGAGAGATGTGGTGAGAATATATTGTCCCAACTGCACTAGAAATGCGTCAAGACACTCAGACGTATTTTCAAAGAACTGATACGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25159</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>805921</contig_pos>
        <strand>+</strand>
        <context>AGGATTACTG[C/T]GAAATTCTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGATTTGATCGAGCCAATTCAGTATACAGTAAGAAAATGAGGATTACTG</left_flank>
        <right_flank>GAAATTCTGGAATTCGCAATTTTTCAGATTAATCTTCAACATGTTGCGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGGCCGATTATGATGTTGTCATATTCTCTGAAAACGCGAATATCCAAATTGGAACATGGCTGAAATTGAATTTATCACTGGACCAGCTATCTCAAGAGTATCTGGAATGTCCCAATTTTACAGTAATCCCATATCCAGTTCATACAACTTTCCCATCTAAAAATAACCAATTATGCTTAACATTGGAGTTAGATATTCCAGAAGGTTCACAGAACCTTTCACATCCATTTGTGGGAGAGATTATGTAAGTCTATCTGTGTGTCAAAGTGTCTAGATGTCCCATTTTTTCAGAAATATCATTGAACCATTTAGACAAACCGGGAGATATTCGATAACTATAATGAGGAAAAAAATCGGAACACAAATTGGATGGTTCTTGACAGCGAAACAATTGGTGACATTTTTTTTTGAAAAATACAGTAATCCTCGAGTTTCAGAAGCAACCAAAGGATTTGATCGAGCCAATTCAGTATACAGTAAGAAAATGAGGATTACTGCGAAATTCTGGAATTCGCAATTTTTCAGATTAATCTTCAACATGTTGCGAGACATCATATATCAAGGAGAGATGTGGTGAGAATATATTGTCCCAACTGCACTAGAAATGCGTCAAGACACTCAGACGTATTTTCAAAGAACTGATACGTTGGCGCATTTCTGGTGCCTTGGCGCATTTGCCGTAACTGGACGCTTTGCTGGTTGTCCAAACATTTTTTTTTGATTCCGTGACGCGTTTCTTGTGCATTCGCGCGTTATTAGTGCTCCTTCTTTCAGCTCGAACCAGATTCTCCACCCCAAACTGCACCCAGATATTCTCGTAATCAGCACCAGACCGACATTCTGGGCTCACAATTTGATACGTTGCTCAATACTGTAGGACTGAAAAAAAAACATTTGGACGTCTGGAAATAAGAATTTTGCAGACTAACCGACCTTCTACAAGTTCCAATCAACCTGGAAATTGGAATCCAGTTCAAACAACAGTAAGACAATATACT</canonical>
            <polymorphic>AAAGGCCGATTATGATGTTGTCATATTCTCTGAAAACGCGAATATCCAAATTGGAACATGGCTGAAATTGAATTTATCACTGGACCAGCTATCTCAAGAGTATCTGGAATGTCCCAATTTTACAGTAATCCCATATCCAGTTCATACAACTTTCCCATCTAAAAATAACCAATTATGCTTAACATTGGAGTTAGATATTCCAGAAGGTTCACAGAACCTTTCACATCCATTTGTGGGAGAGATTATGTAAGTCTATCTGTGTGTCAAAGTGTCTAGATGTCCCATTTTTTCAGAAATATCATTGAACCATTTAGACAAACCGGGAGATATTCGATAACTATAATGAGGAAAAAAATCGGAACACAAATTGGATGGTTCTTGACAGCGAAACAATTGGTGACATTTTTTTTTGAAAAATACAGTAATCCTCGAGTTTCAGAAGCAACCAAAGGATTTGATCGAGCCAATTCAGTATACAGTAAGAAAATGAGGATTACTGYGAAATTCTGGAATTCGCAATTTTTCAGATTAATCTTCAACATGTTGCGAGACATCATATATCAAGGAGAGATGTGGTGAGAATATATTGTCCCAACTGCACTAGAAATGCGTCAAGACACTCAGACGTATTTTCAAAGAACTGATACGTTGGCGCATTTCTGGTGCCTTGGCGCATTTGCCGTAACTGGACGCTTTGCTGGTTGTCCAAACATTTTTTTTTGATTCCGTGACGCGTTTCTTGTGCATTCGCGCGTTATTAGTGCTCCTTCTTTCAGCTCGAACCAGATTCTCCACCCCAAACTGCACCCAGATATTCTCGTAATCAGCACCAGACCGACATTCTGGGCTCACAATTTGATACGTTGCTCAATACTGTAGGACTGAAAAAAAAACATTTGGACGTCTGGAAATAAGAATTTTGCAGACTAACCGACCTTCTACAAGTTCCAATCAACCTGGAAATTGGAATCCAGTTCAAACAACAGTAAGACAATATACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAATACAGTAATCCTCGAGTT</pcr_primer_p1>
		<pcr_primer_p2>CAACGTATCAGTTCTTTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GAAAAATACAGTAATCCTCGAGTTTCAGAAGCAACCAAAGGATTTGATCGAGCCAATTCAGTATACAGTAAGAAAATGAGGATTACTGCGAAATTCTGGAATTCGCAATTTTTCAGATTAATCTTCAACATGTTGCGAGACATCATATATCAAGGAGAGATGTGGTGAGAATATATTGTCCCAACTGCACTAGAAATGCGTCAAGACACTCAGACGTATTTTCAAAGAACTGATACGTTG</canonical_amplicon>
		<polymorphic_amplicon>GAAAAATACAGTAATCCTCGAGTTTCAGAAGCAACCAAAGGATTTGATCGAGCCAATTCAGTATACAGTAAGAAAATGAGGATTACTGYGAAATTCTGGAATTCGCAATTTTTCAGATTAATCTTCAACATGTTGCGAGACATCATATATCAAGGAGAGATGTGGTGAGAATATATTGTCCCAACTGCACTAGAAATGCGTCAAGACACTCAGACGTATTTTCAAAGAACTGATACGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25160</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>805995</contig_pos>
        <strand>+</strand>
        <context>AGGAGAGATG[A/T]GGTGAGAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAGATTAATCTTCAACATGTTGCGAGACATCATATATCAAGGAGAGATG</left_flank>
        <right_flank>GGTGAGAATATATTGTCCCAACTGCACTAGAAATGCGTCAAGACACTCAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCACTGGACCAGCTATCTCAAGAGTATCTGGAATGTCCCAATTTTACAGTAATCCCATATCCAGTTCATACAACTTTCCCATCTAAAAATAACCAATTATGCTTAACATTGGAGTTAGATATTCCAGAAGGTTCACAGAACCTTTCACATCCATTTGTGGGAGAGATTATGTAAGTCTATCTGTGTGTCAAAGTGTCTAGATGTCCCATTTTTTCAGAAATATCATTGAACCATTTAGACAAACCGGGAGATATTCGATAACTATAATGAGGAAAAAAATCGGAACACAAATTGGATGGTTCTTGACAGCGAAACAATTGGTGACATTTTTTTTTGAAAAATACAGTAATCCTCGAGTTTCAGAAGCAACCAAAGGATTTGATCGAGCCAATTCAGTATACAGTAAGAAAATGAGGATTACTGCGAAATTCTGGAATTCGCAATTTTTCAGATTAATCTTCAACATGTTGCGAGACATCATATATCAAGGAGAGATGTGGTGAGAATATATTGTCCCAACTGCACTAGAAATGCGTCAAGACACTCAGACGTATTTTCAAAGAACTGATACGTTGGCGCATTTCTGGTGCCTTGGCGCATTTGCCGTAACTGGACGCTTTGCTGGTTGTCCAAACATTTTTTTTTGATTCCGTGACGCGTTTCTTGTGCATTCGCGCGTTATTAGTGCTCCTTCTTTCAGCTCGAACCAGATTCTCCACCCCAAACTGCACCCAGATATTCTCGTAATCAGCACCAGACCGACATTCTGGGCTCACAATTTGATACGTTGCTCAATACTGTAGGACTGAAAAAAAAACATTTGGACGTCTGGAAATAAGAATTTTGCAGACTAACCGACCTTCTACAAGTTCCAATCAACCTGGAAATTGGAATCCAGTTCAAACAACAGTAAGACAATATACTAGTGTATATTTCGGATAGTTTTGTAACAATATAATTTCAGAGAACTTCTCGCCCACAGCGATCATCATCGAGAC</canonical>
            <polymorphic>TATCACTGGACCAGCTATCTCAAGAGTATCTGGAATGTCCCAATTTTACAGTAATCCCATATCCAGTTCATACAACTTTCCCATCTAAAAATAACCAATTATGCTTAACATTGGAGTTAGATATTCCAGAAGGTTCACAGAACCTTTCACATCCATTTGTGGGAGAGATTATGTAAGTCTATCTGTGTGTCAAAGTGTCTAGATGTCCCATTTTTTCAGAAATATCATTGAACCATTTAGACAAACCGGGAGATATTCGATAACTATAATGAGGAAAAAAATCGGAACACAAATTGGATGGTTCTTGACAGCGAAACAATTGGTGACATTTTTTTTTGAAAAATACAGTAATCCTCGAGTTTCAGAAGCAACCAAAGGATTTGATCGAGCCAATTCAGTATACAGTAAGAAAATGAGGATTACTGCGAAATTCTGGAATTCGCAATTTTTCAGATTAATCTTCAACATGTTGCGAGACATCATATATCAAGGAGAGATGWGGTGAGAATATATTGTCCCAACTGCACTAGAAATGCGTCAAGACACTCAGACGTATTTTCAAAGAACTGATACGTTGGCGCATTTCTGGTGCCTTGGCGCATTTGCCGTAACTGGACGCTTTGCTGGTTGTCCAAACATTTTTTTTTGATTCCGTGACGCGTTTCTTGTGCATTCGCGCGTTATTAGTGCTCCTTCTTTCAGCTCGAACCAGATTCTCCACCCCAAACTGCACCCAGATATTCTCGTAATCAGCACCAGACCGACATTCTGGGCTCACAATTTGATACGTTGCTCAATACTGTAGGACTGAAAAAAAAACATTTGGACGTCTGGAAATAAGAATTTTGCAGACTAACCGACCTTCTACAAGTTCCAATCAACCTGGAAATTGGAATCCAGTTCAAACAACAGTAAGACAATATACTAGTGTATATTTCGGATAGTTTTGTAACAATATAATTTCAGAGAACTTCTCGCCCACAGCGATCATCATCGAGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>176 153 132 92 65 51 46 36 31 26 23 22 22 19 19 19 14 12 12 12 8 5 3 2</canonical_bands>
                <polymorphic_bands>179 153 132 92 65 51 46 36 31 26 23 22 22 19 19 19 14 12 12 12 8 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAATACAGTAATCCTCGAGTT</pcr_primer_p1>
		<pcr_primer_p2>CAACGTATCAGTTCTTTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GAAAAATACAGTAATCCTCGAGTTTCAGAAGCAACCAAAGGATTTGATCGAGCCAATTCAGTATACAGTAAGAAAATGAGGATTACTGCGAAATTCTGGAATTCGCAATTTTTCAGATTAATCTTCAACATGTTGCGAGACATCATATATCAAGGAGAGATGTGGTGAGAATATATTGTCCCAACTGCACTAGAAATGCGTCAAGACACTCAGACGTATTTTCAAAGAACTGATACGTTG</canonical_amplicon>
		<polymorphic_amplicon>GAAAAATACAGTAATCCTCGAGTTTCAGAAGCAACCAAAGGATTTGATCGAGCCAATTCAGTATACAGTAAGAAAATGAGGATTACTGCGAAATTCTGGAATTCGCAATTTTTCAGATTAATCTTCAACATGTTGCGAGACATCATATATCAAGGAGAGATGWGGTGAGAATATATTGTCCCAACTGCACTAGAAATGCGTCAAGACACTCAGACGTATTTTCAAAGAACTGATACGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25161</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>806040</contig_pos>
        <strand>+</strand>
        <context>GCGTCAAGAC[A/G]CTCAGACGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGATGTGGTGAGAATATATTGTCCCAACTGCACTAGAAATGCGTCAAGAC</left_flank>
        <right_flank>CTCAGACGTATTTTCAAAGAACTGATACGTTGGCGCATTTCTGGTGCCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACAGTAATCCCATATCCAGTTCATACAACTTTCCCATCTAAAAATAACCAATTATGCTTAACATTGGAGTTAGATATTCCAGAAGGTTCACAGAACCTTTCACATCCATTTGTGGGAGAGATTATGTAAGTCTATCTGTGTGTCAAAGTGTCTAGATGTCCCATTTTTTCAGAAATATCATTGAACCATTTAGACAAACCGGGAGATATTCGATAACTATAATGAGGAAAAAAATCGGAACACAAATTGGATGGTTCTTGACAGCGAAACAATTGGTGACATTTTTTTTTGAAAAATACAGTAATCCTCGAGTTTCAGAAGCAACCAAAGGATTTGATCGAGCCAATTCAGTATACAGTAAGAAAATGAGGATTACTGCGAAATTCTGGAATTCGCAATTTTTCAGATTAATCTTCAACATGTTGCGAGACATCATATATCAAGGAGAGATGTGGTGAGAATATATTGTCCCAACTGCACTAGAAATGCGTCAAGACACTCAGACGTATTTTCAAAGAACTGATACGTTGGCGCATTTCTGGTGCCTTGGCGCATTTGCCGTAACTGGACGCTTTGCTGGTTGTCCAAACATTTTTTTTTGATTCCGTGACGCGTTTCTTGTGCATTCGCGCGTTATTAGTGCTCCTTCTTTCAGCTCGAACCAGATTCTCCACCCCAAACTGCACCCAGATATTCTCGTAATCAGCACCAGACCGACATTCTGGGCTCACAATTTGATACGTTGCTCAATACTGTAGGACTGAAAAAAAAACATTTGGACGTCTGGAAATAAGAATTTTGCAGACTAACCGACCTTCTACAAGTTCCAATCAACCTGGAAATTGGAATCCAGTTCAAACAACAGTAAGACAATATACTAGTGTATATTTCGGATAGTTTTGTAACAATATAATTTCAGAGAACTTCTCGCCCACAGCGATCATCATCGAGACCAAGGAATGAGGTTAGTAGCACCAGAAATGCGCCAATGCACCGGA</canonical>
            <polymorphic>TTACAGTAATCCCATATCCAGTTCATACAACTTTCCCATCTAAAAATAACCAATTATGCTTAACATTGGAGTTAGATATTCCAGAAGGTTCACAGAACCTTTCACATCCATTTGTGGGAGAGATTATGTAAGTCTATCTGTGTGTCAAAGTGTCTAGATGTCCCATTTTTTCAGAAATATCATTGAACCATTTAGACAAACCGGGAGATATTCGATAACTATAATGAGGAAAAAAATCGGAACACAAATTGGATGGTTCTTGACAGCGAAACAATTGGTGACATTTTTTTTTGAAAAATACAGTAATCCTCGAGTTTCAGAAGCAACCAAAGGATTTGATCGAGCCAATTCAGTATACAGTAAGAAAATGAGGATTACTGCGAAATTCTGGAATTCGCAATTTTTCAGATTAATCTTCAACATGTTGCGAGACATCATATATCAAGGAGAGATGTGGTGAGAATATATTGTCCCAACTGCACTAGAAATGCGTCAAGACRCTCAGACGTATTTTCAAAGAACTGATACGTTGGCGCATTTCTGGTGCCTTGGCGCATTTGCCGTAACTGGACGCTTTGCTGGTTGTCCAAACATTTTTTTTTGATTCCGTGACGCGTTTCTTGTGCATTCGCGCGTTATTAGTGCTCCTTCTTTCAGCTCGAACCAGATTCTCCACCCCAAACTGCACCCAGATATTCTCGTAATCAGCACCAGACCGACATTCTGGGCTCACAATTTGATACGTTGCTCAATACTGTAGGACTGAAAAAAAAACATTTGGACGTCTGGAAATAAGAATTTTGCAGACTAACCGACCTTCTACAAGTTCCAATCAACCTGGAAATTGGAATCCAGTTCAAACAACAGTAAGACAATATACTAGTGTATATTTCGGATAGTTTTGTAACAATATAATTTCAGAGAACTTCTCGCCCACAGCGATCATCATCGAGACCAAGGAATGAGGTTAGTAGCACCAGAAATGCGCCAATGCACCGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>176 153 92 92 65 51 46 40 36 31 26 23 22 22 19 19 19 14 12 12 12 8 5 3 2</canonical_bands>
                <polymorphic_bands>176 153 92 92 65 65 51 40 36 31 26 23 22 22 19 19 14 12 12 12 8 5 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAGACATCATATATCAAGGAGA</pcr_primer_p1>
		<pcr_primer_p2>CTGAAAGAAGGAGCACTAATAAC</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>CGAGACATCATATATCAAGGAGAGATGTGGTGAGAATATATTGTCCCAACTGCACTAGAAATGCGTCAAGACACTCAGACGTATTTTCAAAGAACTGATACGTTGGCGCATTTCTGGTGCCTTGGCGCATTTGCCGTAACTGGACGCTTTGCTGGTTGTCCAAACATTTTTTTTTGATTCCGTGACGCGTTTCTTGTGCATTCGCGCGTTATTAGTGCTCCTTCTTTCAG</canonical_amplicon>
		<polymorphic_amplicon>CGAGACATCATATATCAAGGAGAGATGTGGTGAGAATATATTGTCCCAACTGCACTAGAAATGCGTCAAGACRCTCAGACGTATTTTCAAAGAACTGATACGTTGGCGCATTTCTGGTGCCTTGGCGCATTTGCCGTAACTGGACGCTTTGCTGGTTGTCCAAACATTTTTTTTTGATTCCGTGACGCGTTTCTTGTGCATTCGCGCGTTATTAGTGCTCCTTCTTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25162</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>806107</contig_pos>
        <strand>+</strand>
        <context>TTTGCCGTAA[C/T]TGGACGCTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGAACTGATACGTTGGCGCATTTCTGGTGCCTTGGCGCATTTGCCGTAA</left_flank>
        <right_flank>TGGACGCTTTGCTGGTTGTCCAAACATTTTTTTTTGATTCCGTGACGCGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGTTAGATATTCCAGAAGGTTCACAGAACCTTTCACATCCATTTGTGGGAGAGATTATGTAAGTCTATCTGTGTGTCAAAGTGTCTAGATGTCCCATTTTTTCAGAAATATCATTGAACCATTTAGACAAACCGGGAGATATTCGATAACTATAATGAGGAAAAAAATCGGAACACAAATTGGATGGTTCTTGACAGCGAAACAATTGGTGACATTTTTTTTTGAAAAATACAGTAATCCTCGAGTTTCAGAAGCAACCAAAGGATTTGATCGAGCCAATTCAGTATACAGTAAGAAAATGAGGATTACTGCGAAATTCTGGAATTCGCAATTTTTCAGATTAATCTTCAACATGTTGCGAGACATCATATATCAAGGAGAGATGTGGTGAGAATATATTGTCCCAACTGCACTAGAAATGCGTCAAGACACTCAGACGTATTTTCAAAGAACTGATACGTTGGCGCATTTCTGGTGCCTTGGCGCATTTGCCGTAACTGGACGCTTTGCTGGTTGTCCAAACATTTTTTTTTGATTCCGTGACGCGTTTCTTGTGCATTCGCGCGTTATTAGTGCTCCTTCTTTCAGCTCGAACCAGATTCTCCACCCCAAACTGCACCCAGATATTCTCGTAATCAGCACCAGACCGACATTCTGGGCTCACAATTTGATACGTTGCTCAATACTGTAGGACTGAAAAAAAAACATTTGGACGTCTGGAAATAAGAATTTTGCAGACTAACCGACCTTCTACAAGTTCCAATCAACCTGGAAATTGGAATCCAGTTCAAACAACAGTAAGACAATATACTAGTGTATATTTCGGATAGTTTTGTAACAATATAATTTCAGAGAACTTCTCGCCCACAGCGATCATCATCGAGACCAAGGAATGAGGTTAGTAGCACCAGAAATGCGCCAATGCACCGGAACGATGTCAAGAGCCTTTTTGAGAAACAAAGTTATTTTTCAGACATCTGCTCAAACAACAACTTCAA</canonical>
            <polymorphic>GGAGTTAGATATTCCAGAAGGTTCACAGAACCTTTCACATCCATTTGTGGGAGAGATTATGTAAGTCTATCTGTGTGTCAAAGTGTCTAGATGTCCCATTTTTTCAGAAATATCATTGAACCATTTAGACAAACCGGGAGATATTCGATAACTATAATGAGGAAAAAAATCGGAACACAAATTGGATGGTTCTTGACAGCGAAACAATTGGTGACATTTTTTTTTGAAAAATACAGTAATCCTCGAGTTTCAGAAGCAACCAAAGGATTTGATCGAGCCAATTCAGTATACAGTAAGAAAATGAGGATTACTGCGAAATTCTGGAATTCGCAATTTTTCAGATTAATCTTCAACATGTTGCGAGACATCATATATCAAGGAGAGATGTGGTGAGAATATATTGTCCCAACTGCACTAGAAATGCGTCAAGACACTCAGACGTATTTTCAAAGAACTGATACGTTGGCGCATTTCTGGTGCCTTGGCGCATTTGCCGTAAYTGGACGCTTTGCTGGTTGTCCAAACATTTTTTTTTGATTCCGTGACGCGTTTCTTGTGCATTCGCGCGTTATTAGTGCTCCTTCTTTCAGCTCGAACCAGATTCTCCACCCCAAACTGCACCCAGATATTCTCGTAATCAGCACCAGACCGACATTCTGGGCTCACAATTTGATACGTTGCTCAATACTGTAGGACTGAAAAAAAAACATTTGGACGTCTGGAAATAAGAATTTTGCAGACTAACCGACCTTCTACAAGTTCCAATCAACCTGGAAATTGGAATCCAGTTCAAACAACAGTAAGACAATATACTAGTGTATATTTCGGATAGTTTTGTAACAATATAATTTCAGAGAACTTCTCGCCCACAGCGATCATCATCGAGACCAAGGAATGAGGTTAGTAGCACCAGAAATGCGCCAATGCACCGGAACGATGTCAAGAGCCTTTTTGAGAAACAAAGTTATTTTTCAGACATCTGCTCAAACAACAACTTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>295 285 210 164 46</canonical_bands>
                <polymorphic_bands>331 295 210 164</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAGACGTATTTTCAAAGAACT</pcr_primer_p1>
		<pcr_primer_p2>TTGAGCAACGTATCAAATTGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTCAGACGTATTTTCAAAGAACTGATACGTTGGCGCATTTCTGGTGCCTTGGCGCATTTGCCGTAACTGGACGCTTTGCTGGTTGTCCAAACATTTTTTTTTGATTCCGTGACGCGTTTCTTGTGCATTCGCGCGTTATTAGTGCTCCTTCTTTCAGCTCGAACCAGATTCTCCACCCCAAACTGCACCCAGATATTCTCGTAATCAGCACCAGACCGACATTCTGGGCTCACAATTTGATACGTTGCTCAA</canonical_amplicon>
		<polymorphic_amplicon>CTCAGACGTATTTTCAAAGAACTGATACGTTGGCGCATTTCTGGTGCCTTGGCGCATTTGCCGTAAYTGGACGCTTTGCTGGTTGTCCAAACATTTTTTTTTGATTCCGTGACGCGTTTCTTGTGCATTCGCGCGTTATTAGTGCTCCTTCTTTCAGCTCGAACCAGATTCTCCACCCCAAACTGCACCCAGATATTCTCGTAATCAGCACCAGACCGACATTCTGGGCTCACAATTTGATACGTTGCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25163</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>828762</contig_pos>
        <strand>+</strand>
        <context>CCCTTTACAA[C/T]GTGTGTGTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCGCCCTTTACAA</left_flank>
        <right_flank>GTGTGTGTGTGTGTGTTTTCATCTGTGTGTCTGCGCCTCTCCAAGATTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGCGGAGCCTAGTCGTGTTTATACTCATTTGAAAGCCCATAACGTCCAAATTTTGAAAATGCAAGTTTTATGCGAAAATTCGTTAAAACAGCCGAGTTACGACCAAATCAATATTTTTTGAAAAAAATTCGAAAATTGATTTTTGGACATAACTTTGAAAATTCTTGAAATTTCTCAACTAAACATTCATTTTTGAATTTGCCACGTTTAGATCTTCAAAATGAGTATAATCATGATCTAATTCCCAAAGAATTCAAAATTTCCGACCCCTATGCGCCTTTAATGTCGAATATTGAAAGTGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTTTCAACGCCCTAAATTCATAAATCAAAACAAAATTTATAAAAATCGAGAAACGAAATGGTCGTTTCTCTGTGTCTCTTTTCCTTGTTTTTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCGCCCTTTACAATGTGTGTGTGTGTGTGTTTTCATCTGTGTGTCTGCGCCTCTCCAAGATTATACTCTCTCGTTTTCTATTTCTTTTTCTTCTATTTATCGAATATATATATATATTCGTTATTGTTTATTTTATACATGAATCATTTTATTTTGTAATTTTGTATTTTTGAAAATTTTTCAAAAATTAGAAACCTAATAAAATTAGAGTTTAAAAATCTGAAAAAAAAATCCTTGATTTGTCAATTTTCAGACTGAAATTTCAGTTTTTAGATATATTTTTTCAAGATCTTTCAAAACTCGTTAAAAATTTGAAAATCCAGAATTTTGAGGATTCTGGAAGAGCCAAAATTCTTTTTCCCTCGATTTTCTTTCTTTTTCTCTGCGTCTCGTGTTACACAAAATCTCTAGTTTTTTTTTCCTTTTCACTCACGGATAGGATGGGGGGAAGATAAGTGGAGTAAAACAGAAAGAAACATCTAGAACTTTTTTCTTTTTTTTTTCCTCTCGATTT</canonical>
            <polymorphic>TGGGCGGAGCCTAGTCGTGTTTATACTCATTTGAAAGCCCATAACGTCCAAATTTTGAAAATGCAAGTTTTATGCGAAAATTCGTTAAAACAGCCGAGTTACGACCAAATCAATATTTTTTGAAAAAAATTCGAAAATTGATTTTTGGACATAACTTTGAAAATTCTTGAAATTTCTCAACTAAACATTCATTTTTGAATTTGCCACGTTTAGATCTTCAAAATGAGTATAATCATGATCTAATTCCCAAAGAATTCAAAATTTCCGACCCCTATGCGCCTTTAATGTCGAATATTGAAAGTGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTTTCAACGCCCTAAATTCATAAATCAAAACAAAATTTATAAAAATCGAGAAACGAAATGGTCGTTTCTCTGTGTCTCTTTTCCTTGTTTTTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCGCCCTTTACAAYGTGTGTGTGTGTGTGTTTTCATCTGTGTGTCTGCGCCTCTCCAAGATTATACTCTCTCGTTTTCTATTTCTTTTTCTTCTATTTATCGAATATATATATATATTCGTTATTGTTTATTTTATACATGAATCATTTTATTTTGTAATTTTGTATTTTTGAAAATTTTTCAAAAATTAGAAACCTAATAAAATTAGAGTTTAAAAATCTGAAAAAAAAATCCTTGATTTGTCAATTTTCAGACTGAAATTTCAGTTTTTAGATATATTTTTTCAAGATCTTTCAAAACTCGTTAAAAATTTGAAAATCCAGAATTTTGAGGATTCTGGAAGAGCCAAAATTCTTTTTCCCTCGATTTTCTTTCTTTTTCTCTGCGTCTCGTGTTACACAAAATCTCTAGTTTTTTTTTCCTTTTCACTCACGGATAGGATGGGGGGAAGATAAGTGGAGTAAAACAGAAAGAAACATCTAGAACTTTTTTCTTTTTTTTTTCCTCTCGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGGTCGTTTCTCTGTGTC</pcr_primer_p1>
		<pcr_primer_p2>TTCGATAAATAGAAGAAAAAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>196</pcr_amplicon_size>
		<canonical_amplicon>AATGGTCGTTTCTCTGTGTCTCTTTTCCTTGTTTTTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCGCCCTTTACAATGTGTGTGTGTGTGTGTTTTCATCTGTGTGTCTGCGCCTCTCCAAGATTATACTCTCTCGTTTTCTATTTCTTTTTCTTCTATTTATCGAA</canonical_amplicon>
		<polymorphic_amplicon>AATGGTCGTTTCTCTGTGTCTCTTTTCCTTGTTTTTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCGCCCTTTACAAYGTGTGTGTGTGTGTGTTTTCATCTGTGTGTCTGCGCCTCTCCAAGATTATACTCTCTCGTTTTCTATTTCTTTTTCTTCTATTTATCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25164</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>828975</contig_pos>
        <strand>+</strand>
        <context>AATCTGAAAA[A/T]AAAATCCTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTCAAAAATTAGAAACCTAATAAAATTAGAGTTTAAAAATCTGAAAA</left_flank>
        <right_flank>AAAATCCTTGATTTGTCAATTTTCAGACTGAAATTTCAGTTTTTAGATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTTCAAAATGAGTATAATCATGATCTAATTCCCAAAGAATTCAAAATTTCCGACCCCTATGCGCCTTTAATGTCGAATATTGAAAGTGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTTTCAACGCCCTAAATTCATAAATCAAAACAAAATTTATAAAAATCGAGAAACGAAATGGTCGTTTCTCTGTGTCTCTTTTCCTTGTTTTTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCGCCCTTTACAATGTGTGTGTGTGTGTGTTTTCATCTGTGTGTCTGCGCCTCTCCAAGATTATACTCTCTCGTTTTCTATTTCTTTTTCTTCTATTTATCGAATATATATATATATTCGTTATTGTTTATTTTATACATGAATCATTTTATTTTGTAATTTTGTATTTTTGAAAATTTTTCAAAAATTAGAAACCTAATAAAATTAGAGTTTAAAAATCTGAAAAAAAAATCCTTGATTTGTCAATTTTCAGACTGAAATTTCAGTTTTTAGATATATTTTTTCAAGATCTTTCAAAACTCGTTAAAAATTTGAAAATCCAGAATTTTGAGGATTCTGGAAGAGCCAAAATTCTTTTTCCCTCGATTTTCTTTCTTTTTCTCTGCGTCTCGTGTTACACAAAATCTCTAGTTTTTTTTTCCTTTTCACTCACGGATAGGATGGGGGGAAGATAAGTGGAGTAAAACAGAAAGAAACATCTAGAACTTTTTTCTTTTTTTTTTCCTCTCGATTTTCAGTCATTTTCAGTAATAATCTTTTCAATTTTGGATATTTTCAAGTTATAGTCATATTTTTAAAATTATCACATCAAGAGCTTTCAAATGAGTATAAACACGACTAGGCTCCGCCCATGTTGAGTTTTATGACTTTAAAGGCGCACAGGGGTCCGAAGTTTTGAAGTTTTTGGGAATAAAGTCATGATTATACTCATTTTGAAGCTCTAAAC</canonical>
            <polymorphic>ATCTTCAAAATGAGTATAATCATGATCTAATTCCCAAAGAATTCAAAATTTCCGACCCCTATGCGCCTTTAATGTCGAATATTGAAAGTGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTTTCAACGCCCTAAATTCATAAATCAAAACAAAATTTATAAAAATCGAGAAACGAAATGGTCGTTTCTCTGTGTCTCTTTTCCTTGTTTTTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCGCCCTTTACAATGTGTGTGTGTGTGTGTTTTCATCTGTGTGTCTGCGCCTCTCCAAGATTATACTCTCTCGTTTTCTATTTCTTTTTCTTCTATTTATCGAATATATATATATATTCGTTATTGTTTATTTTATACATGAATCATTTTATTTTGTAATTTTGTATTTTTGAAAATTTTTCAAAAATTAGAAACCTAATAAAATTAGAGTTTAAAAATCTGAAAAWAAAATCCTTGATTTGTCAATTTTCAGACTGAAATTTCAGTTTTTAGATATATTTTTTCAAGATCTTTCAAAACTCGTTAAAAATTTGAAAATCCAGAATTTTGAGGATTCTGGAAGAGCCAAAATTCTTTTTCCCTCGATTTTCTTTCTTTTTCTCTGCGTCTCGTGTTACACAAAATCTCTAGTTTTTTTTTCCTTTTCACTCACGGATAGGATGGGGGGAAGATAAGTGGAGTAAAACAGAAAGAAACATCTAGAACTTTTTTCTTTTTTTTTTCCTCTCGATTTTCAGTCATTTTCAGTAATAATCTTTTCAATTTTGGATATTTTCAAGTTATAGTCATATTTTTAAAATTATCACATCAAGAGCTTTCAAATGAGTATAAACACGACTAGGCTCCGCCCATGTTGAGTTTTATGACTTTAAAGGCGCACAGGGGTCCGAAGTTTTGAAGTTTTTGGGAATAAAGTCATGATTATACTCATTTTGAAGCTCTAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCGTTTTCTATTTCTTTTTCTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAATTTTTAACGAGTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTCGTTTTCTATTTCTTTTTCTTCTATTTATCGAATATATATATATATTCGTTATTGTTTATTTTATACATGAATCATTTTATTTTGTAATTTTGTATTTTTGAAAATTTTTCAAAAATTAGAAACCTAATAAAATTAGAGTTTAAAAATCTGAAAAAAAAATCCTTGATTTGTCAATTTTCAGACTGAAATTTCAGTTTTTAGATATATTTTTTCAAGATCTTTCAAAACTCGTTAAAAATTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTCGTTTTCTATTTCTTTTTCTTCTATTTATCGAATATATATATATATTCGTTATTGTTTATTTTATACATGAATCATTTTATTTTGTAATTTTGTATTTTTGAAAATTTTTCAAAAATTAGAAACCTAATAAAATTAGAGTTTAAAAATCTGAAAAWAAAATCCTTGATTTGTCAATTTTCAGACTGAAATTTCAGTTTTTAGATATATTTTTTCAAGATCTTTCAAAACTCGTTAAAAATTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25165</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>829168</contig_pos>
        <strand></strand>
        <context>AGTTTTTTTT[T/C]CCTTTTCACT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCTTTCTTTTTCTCTGCGTCTCGTGTTACACAAAATCTCTAGTTTTTTTT</left_flank>
        <right_flank>CCTTTTCACTCACGGATAGGATGGGGGGAAGATAAGTGGAGTAAAACAGA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGTGTCTCTTTTCCTTGTTTTTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCGCCCTTTACAATGTGTGTGTGTGTGTGTTTTCATCTGTGTGTCTGCGCCTCTCCAAGATTATACTCTCTCGTTTTCTATTTCTTTTTCTTCTATTTATCGAATATATATATATATTCGTTATTGTTTATTTTATACATGAATCATTTTATTTTGTAATTTTGTATTTTTGAAAATTTTTCAAAAATTAGAAACCTAATAAAATTAGAGTTTAAAAATCTGAAAAAAAAATCCTTGATTTGTCAATTTTCAGACTGAAATTTCAGTTTTTAGATATATTTTTTCAAGATCTTTCAAAACTCGTTAAAAATTTGAAAATCCAGAATTTTGAGGATTCTGGAAGAGCCAAAATTCTTTTTCCCTCGATTTTCTTTCTTTTTCTCTGCGTCTCGTGTTACACAAAATCTCTAGTTTTTTTTTCCTTTTCACTCACGGATAGGATGGGGGGAAGATAAGTGGAGTAAAACAGAAAGAAACATCTAGAACTTTTTTCTTTTTTTTTTCCTCTCGATTTTCAGTCATTTTCAGTAATAATCTTTTCAATTTTGGATATTTTCAAGTTATAGTCATATTTTTAAAATTATCACATCAAGAGCTTTCAAATGAGTATAAACACGACTAGGCTCCGCCCATGTTGAGTTTTATGACTTTAAAGGCGCACAGGGGTCCGAAGTTTTGAAGTTTTTGGGAATAAAGTCATGATTATACTCATTTTGAAGCTCTAAACGTGGAAAATTCAAAAATGTATGTTTAGTTGAGAAATTTCGAAAATTTTCAAATTAATGTCCAAAAACCAAATTTCGAATTTTTTCACAAAAATATTGATTTGGTCGTAACTCGGTTGTTTTAACGAATTCTTGCATAAAACTTGCATTTTAAAAGTTTGGACGTTATGGGCTTTCAAATGAGTATAAACACGG</canonical>
            <polymorphic>TCTGTGTCTCTTTTCCTTGTTTTTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCGCCCTTTACAATGTGTGTGTGTGTGTGTTTTCATCTGTGTGTCTGCGCCTCTCCAAGATTATACTCTCTCGTTTTCTATTTCTTTTTCTTCTATTTATCGAATATATATATATATTCGTTATTGTTTATTTTATACATGAATCATTTTATTTTGTAATTTTGTATTTTTGAAAATTTTTCAAAAATTAGAAACCTAATAAAATTAGAGTTTAAAAATCTGAAAAAAAAATCCTTGATTTGTCAATTTTCAGACTGAAATTTCAGTTTTTAGATATATTTTTTCAAGATCTTTCAAAACTCGTTAAAAATTTGAAAATCCAGAATTTTGAGGATTCTGGAAGAGCCAAAATTCTTTTTCCCTCGATTTTCTTTCTTTTTCTCTGCGTCTCGTGTTACACAAAATCTCTAGTTTTTTTTYCCTTTTCACTCACGGATAGGATGGGGGGAAGATAAGTGGAGTAAAACAGAAAGAAACATCTAGAACTTTTTTCTTTTTTTTTTCCTCTCGATTTTCAGTCATTTTCAGTAATAATCTTTTCAATTTTGGATATTTTCAAGTTATAGTCATATTTTTAAAATTATCACATCAAGAGCTTTCAAATGAGTATAAACACGACTAGGCTCCGCCCATGTTGAGTTTTATGACTTTAAAGGCGCACAGGGGTCCGAAGTTTTGAAGTTTTTGGGAATAAAGTCATGATTATACTCATTTTGAAGCTCTAAACGTGGAAAATTCAAAAATGTATGTTTAGTTGAGAAATTTCGAAAATTTTCAAATTAATGTCCAAAAACCAAATTTCGAATTTTTTCACAAAAATATTGATTTGGTCGTAACTCGGTTGTTTTAACGAATTCTTGCATAAAACTTGCATTTTAAAAGTTTGGACGTTATGGGCTTTCAAATGAGTATAAACACGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGATTTGTCAATTTTCAGACT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTCTTTCTGTTTTACTCCAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTTGATTTGTCAATTTTCAGACTGAAATTTCAGTTTTTAGATATATTTTTTCAAGATCTTTCAAAACTCGTTAAAAATTTGAAAATCCAGAATTTTGAGGATTCTGGAAGAGCCAAAATTCTTTTTCCCTCGATTTTCTTTCTTTTTCTCTGCGTCTCGTGTTACACAAAATCTCTAGTTTTTTTTTCCTTTTCACTCACGGATAGGATGGGGGGAAGATAAGTGGAGTAAAACAGAAAGAAACA</canonical_amplicon>
		<polymorphic_amplicon>CTTGATTTGTCAATTTTCAGACTGAAATTTCAGTTTTTAGATATATTTTTTCAAGATCTTTCAAAACTCGTTAAAAATTTGAAAATCCAGAATTTTGAGGATTCTGGAAGAGCCAAAATTCTTTTTCCCTCGATTTTCTTTCTTTTTCTCTGCGTCTCGTGTTACACAAAATCTCTAGTTTTTTTTYCCTTTTCACTCACGGATAGGATGGGGGGAAGATAAGTGGAGTAAAACAGAAAGAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25167</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>830328</contig_pos>
        <strand></strand>
        <context>gagtaaactg[C/T]aaaacttaga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATGAGTTCAGGTACGTTTTTTCGCTAGGTACAGTAATACGAGTAAACTG</left_flank>
        <right_flank>AAAACTTAGATTTGAGTTTGGCTCAATGAGAGCTTCAAAATGGTACCCCA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATGAAAGCTCTTCAATTAATTGGATTACTGTAGATTTTAAAAATCGCTAAAAACAAAATTATCGTTTCAACATCTTAGTTTCCCTCTATCTCGCTAGTTCTTTGCTCATTTTTGCTTGCTTTTTTTCGCATTTCTCCTGAAATTTTTCCAGATTCTATGCACATTCAATATTTTGTAAATCAATCTACCCAACGGCTTTATCCACTCGGAATACATGAAAATGATGCGTATTTCTATGTGGATACTGTAGGATCTCTGGATTTTGTCACTATCGACGTCCGATTCCCAAATAATTGGCACAAAATTGGCCAATTTTCTCGAGAAGACGTTTCTTATGGATTTCCAGCACTTTCTCCAGATGCTAATTTCATTTTTGTGCTCTTTTTGAAAATGGCAGATGACTGCGTTTTTGGTGTCAAGCGAATTCACTTGGAAACTGGAAAAGAGGATGAGTTCAGGTACGTTTTTTCGCTAGGTACAGTAATACGAGTAAACTGCAAAACTTAGATTTGAGTTTGGCTCAATGAGAGCTTCAAAATGGTACCCCACAAGCCTAGGTTTGACGCAGAGGCGTTATTTTGGACACCTATGCGCCTTTAAAGTCAAAATTTCAAAATGGGCGGAGTCTAGTCTTGTTTATACTCATTTCGAAGCCCATAACGTCCGAATTTTGAAAATGCAAGTTTTATGCAGAAATTCGTTAAAACGAACGAGTTAGGACCAAATCAATATTTTTGTGAAAAAATGCGAAATTTGGTTTTTGGACATAACTTTGTTATTTGTCGAAAATTTCCAACTAAACATAAATTTTTGAATTTGCCACGTTTAGAGCTTCAAAATGAGTATAATCATGACCTACTTTCCAGAAGCTTCCTAATTTCGGACCCCTATGCGCCTTTAAAGTCGAAGATTCAAAATGGGCGGAGTCTAGTCTTGTTTATGCTCATTTCGAAGCTCATAACAAGTTGATTTCAAAAATGCAACATTCGTTACTAGGA</canonical>
            <polymorphic>AAATGAAAGCTCTTCAATTAATTGGATTACTGTAGATTTTAAAAATCGCTAAAAACAAAATTATCGTTTCAACATCTTAGTTTCCCTCTATCTCGCTAGTTCTTTGCTCATTTTTGCTTGCTTTTTTTCGCATTTCTCCTGAAATTTTTCCAGATTCTATGCACATTCAATATTTTGTAAATCAATCTACCCAACGGCTTTATCCACTCGGAATACATGAAAATGATGCGTATTTCTATGTGGATACTGTAGGATCTCTGGATTTTGTCACTATCGACGTCCGATTCCCAAATAATTGGCACAAAATTGGCCAATTTTCTCGAGAAGACGTTTCTTATGGATTTCCAGCACTTTCTCCAGATGCTAATTTCATTTTTGTGCTCTTTTTGAAAATGGCAGATGACTGCGTTTTTGGTGTCAAGCGAATTCACTTGGAAACTGGAAAAGAGGATGAGTTCAGGTACGTTTTTTCGCTAGGTACAGTAATACGAGTAAACTGYAAAACTTAGATTTGAGTTTGGCTCAATGAGAGCTTCAAAATGGTACCCCACAAGCCTAGGTTTGACGCAGAGGCGTTATTTTGGACACCTATGCGCCTTTAAAGTCAAAATTTCAAAATGGGCGGAGTCTAGTCTTGTTTATACTCATTTCGAAGCCCATAACGTCCGAATTTTGAAAATGCAAGTTTTATGCAGAAATTCGTTAAAACGAACGAGTTAGGACCAAATCAATATTTTTGTGAAAAAATGCGAAATTTGGTTTTTGGACATAACTTTGTTATTTGTCGAAAATTTCCAACTAAACATAAATTTTTGAATTTGCCACGTTTAGAGCTTCAAAATGAGTATAATCATGACCTACTTTCCAGAAGCTTCCTAATTTCGGACCCCTATGCGCCTTTAAAGTCGAAGATTCAAAATGGGCGGAGTCTAGTCTTGTTTATGCTCATTTCGAAGCTCATAACAAGTTGATTTCAAAAATGCAACATTCGTTACTAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>338 290 182 161 18 11</canonical_bands>
                <polymorphic_bands>520 290 161 18 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATGAGTTCAGGTACGTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTGGGAAATTCTGAGTCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>964</pcr_amplicon_size>
		<canonical_amplicon>GGATGAGTTCAGGTACGTTTTTTCGCTAGGTACAGTAATACGAGTAAACTGCAAAACTTAGATTTGAGTTTGGC</canonical_amplicon>
		<polymorphic_amplicon>GGATGAGTTCAGGTACGTTTTTTCGCTAGGTACAGTAATACGAGTAAACTGYAAAACTTAGATTTGAGTTTGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25168</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>830471</contig_pos>
        <strand></strand>
        <context>tcttgtttat[A/G]ctcatttyga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCGCCTTTAAAGTCAAAATTTCAAAATGGGCGGAGTCTAGTCTTGTTTAT</left_flank>
        <right_flank>CTCATTTCGAAGCCCATAACGTCCGAATTTTGAAAATGCAAGTTTTATGC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTCCAGATTCTATGCACATTCAATATTTTGTAAATCAATCTACCCAACGGCTTTATCCACTCGGAATACATGAAAATGATGCGTATTTCTATGTGGATACTGTAGGATCTCTGGATTTTGTCACTATCGACGTCCGATTCCCAAATAATTGGCACAAAATTGGCCAATTTTCTCGAGAAGACGTTTCTTATGGATTTCCAGCACTTTCTCCAGATGCTAATTTCATTTTTGTGCTCTTTTTGAAAATGGCAGATGACTGCGTTTTTGGTGTCAAGCGAATTCACTTGGAAACTGGAAAAGAGGATGAGTTCAGGTACGTTTTTTCGCTAGGTACAGTAATACGAGTAAACTGCAAAACTTAGATTTGAGTTTGGCTCAATGAGAGCTTCAAAATGGTACCCCACAAGCCTAGGTTTGACGCAGAGGCGTTATTTTGGACACCTATGCGCCTTTAAAGTCAAAATTTCAAAATGGGCGGAGTCTAGTCTTGTTTATACTCATTTCGAAGCCCATAACGTCCGAATTTTGAAAATGCAAGTTTTATGCAGAAATTCGTTAAAACGAACGAGTTAGGACCAAATCAATATTTTTGTGAAAAAATGCGAAATTTGGTTTTTGGACATAACTTTGTTATTTGTCGAAAATTTCCAACTAAACATAAATTTTTGAATTTGCCACGTTTAGAGCTTCAAAATGAGTATAATCATGACCTACTTTCCAGAAGCTTCCTAATTTCGGACCCCTATGCGCCTTTAAAGTCGAAGATTCAAAATGGGCGGAGTCTAGTCTTGTTTATGCTCATTTCGAAGCTCATAACAAGTTGATTTCAAAAATGCAACATTCGTTACTAGGATATTGCAAAATAACATAAATAGGACCGAAACATGGGATATTTGGAATTTTAGAAAATTTTATTTTTCCCCTAATTTCCTTTATTTTTGATATTTTGAGCAGCCAACTGTACCACAAATTTTCTTTAACGACAAGCTTCAAAAT</canonical>
            <polymorphic>ATTTTTCCAGATTCTATGCACATTCAATATTTTGTAAATCAATCTACCCAACGGCTTTATCCACTCGGAATACATGAAAATGATGCGTATTTCTATGTGGATACTGTAGGATCTCTGGATTTTGTCACTATCGACGTCCGATTCCCAAATAATTGGCACAAAATTGGCCAATTTTCTCGAGAAGACGTTTCTTATGGATTTCCAGCACTTTCTCCAGATGCTAATTTCATTTTTGTGCTCTTTTTGAAAATGGCAGATGACTGCGTTTTTGGTGTCAAGCGAATTCACTTGGAAACTGGAAAAGAGGATGAGTTCAGGTACGTTTTTTCGCTAGGTACAGTAATACGAGTAAACTGCAAAACTTAGATTTGAGTTTGGCTCAATGAGAGCTTCAAAATGGTACCCCACAAGCCTAGGTTTGACGCAGAGGCGTTATTTTGGACACCTATGCGCCTTTAAAGTCAAAATTTCAAAATGGGCGGAGTCTAGTCTTGTTTATRCTCATTTCGAAGCCCATAACGTCCGAATTTTGAAAATGCAAGTTTTATGCAGAAATTCGTTAAAACGAACGAGTTAGGACCAAATCAATATTTTTGTGAAAAAATGCGAAATTTGGTTTTTGGACATAACTTTGTTATTTGTCGAAAATTTCCAACTAAACATAAATTTTTGAATTTGCCACGTTTAGAGCTTCAAAATGAGTATAATCATGACCTACTTTCCAGAAGCTTCCTAATTTCGGACCCCTATGCGCCTTTAAAGTCGAAGATTCAAAATGGGCGGAGTCTAGTCTTGTTTATGCTCATTTCGAAGCTCATAACAAGTTGATTTCAAAAATGCAACATTCGTTACTAGGATATTGCAAAATAACATAAATAGGACCGAAACATGGGATATTTGGAATTTTAGAAAATTTTATTTTTCCCCTAATTTCCTTTATTTTTGATATTTTGAGCAGCCAACTGTACCACAAATTTTCTTTAACGACAAGCTTCAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATGAGTTCAGGTACGTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTGGGAAATTCTGAGTCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>964</pcr_amplicon_size>
		<canonical_amplicon>GGATGAGTTCAGGTACGTTTTTTCGCTAGGTACAGTAATACGAGTAAACTGCAAAACTTAGATTTGAGTTTGGCTCAATGAGAGCTTCAAAATGGTACCCCACAAGCCTAGGTTTGACGCAGAGGCGTTATTTTGGACACCTATGCGCCTTTAAAGTCAAAATTTCAAAATGGGCGGAGTCTAGTCTTGTTTATACTCATTTCGAAGCCCATAACGT</canonical_amplicon>
		<polymorphic_amplicon>GGATGAGTTCAGGTACGTTTTTTCGCTAGGTACAGTAATACGAGTAAACTGCAAAACTTAGATTTGAGTTTGGCTCAATGAGAGCTTCAAAATGGTACCCCACAAGCCTAGGTTTGACGCAGAGGCGTTATTTTGGACACCTATGCGCCTTTAAAGTCAAAATTTCAAAATGGGCGGAGTCTAGTCTTGTTTATRCTCATTTCGAAGCCCATAACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25169</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>830479</contig_pos>
        <strand></strand>
        <context>atrctcattt[C/T]gaagcycata</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGTCAAAATTTCAAAATGGGCGGAGTCTAGTCTTGTTTATACTCATTT</left_flank>
        <right_flank>GAAGCCCATAACGTCCGAATTTTGAAAATGCAAGTTTTATGCAGAAATTC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATTCTATGCACATTCAATATTTTGTAAATCAATCTACCCAACGGCTTTATCCACTCGGAATACATGAAAATGATGCGTATTTCTATGTGGATACTGTAGGATCTCTGGATTTTGTCACTATCGACGTCCGATTCCCAAATAATTGGCACAAAATTGGCCAATTTTCTCGAGAAGACGTTTCTTATGGATTTCCAGCACTTTCTCCAGATGCTAATTTCATTTTTGTGCTCTTTTTGAAAATGGCAGATGACTGCGTTTTTGGTGTCAAGCGAATTCACTTGGAAACTGGAAAAGAGGATGAGTTCAGGTACGTTTTTTCGCTAGGTACAGTAATACGAGTAAACTGCAAAACTTAGATTTGAGTTTGGCTCAATGAGAGCTTCAAAATGGTACCCCACAAGCCTAGGTTTGACGCAGAGGCGTTATTTTGGACACCTATGCGCCTTTAAAGTCAAAATTTCAAAATGGGCGGAGTCTAGTCTTGTTTATACTCATTTCGAAGCCCATAACGTCCGAATTTTGAAAATGCAAGTTTTATGCAGAAATTCGTTAAAACGAACGAGTTAGGACCAAATCAATATTTTTGTGAAAAAATGCGAAATTTGGTTTTTGGACATAACTTTGTTATTTGTCGAAAATTTCCAACTAAACATAAATTTTTGAATTTGCCACGTTTAGAGCTTCAAAATGAGTATAATCATGACCTACTTTCCAGAAGCTTCCTAATTTCGGACCCCTATGCGCCTTTAAAGTCGAAGATTCAAAATGGGCGGAGTCTAGTCTTGTTTATGCTCATTTCGAAGCTCATAACAAGTTGATTTCAAAAATGCAACATTCGTTACTAGGATATTGCAAAATAACATAAATAGGACCGAAACATGGGATATTTGGAATTTTAGAAAATTTTATTTTTCCCCTAATTTCCTTTATTTTTGATATTTTGAGCAGCCAACTGTACCACAAATTTTCTTTAACGACAAGCTTCAAAATGAGTATAA</canonical>
            <polymorphic>AGATTCTATGCACATTCAATATTTTGTAAATCAATCTACCCAACGGCTTTATCCACTCGGAATACATGAAAATGATGCGTATTTCTATGTGGATACTGTAGGATCTCTGGATTTTGTCACTATCGACGTCCGATTCCCAAATAATTGGCACAAAATTGGCCAATTTTCTCGAGAAGACGTTTCTTATGGATTTCCAGCACTTTCTCCAGATGCTAATTTCATTTTTGTGCTCTTTTTGAAAATGGCAGATGACTGCGTTTTTGGTGTCAAGCGAATTCACTTGGAAACTGGAAAAGAGGATGAGTTCAGGTACGTTTTTTCGCTAGGTACAGTAATACGAGTAAACTGCAAAACTTAGATTTGAGTTTGGCTCAATGAGAGCTTCAAAATGGTACCCCACAAGCCTAGGTTTGACGCAGAGGCGTTATTTTGGACACCTATGCGCCTTTAAAGTCAAAATTTCAAAATGGGCGGAGTCTAGTCTTGTTTATACTCATTTYGAAGCCCATAACGTCCGAATTTTGAAAATGCAAGTTTTATGCAGAAATTCGTTAAAACGAACGAGTTAGGACCAAATCAATATTTTTGTGAAAAAATGCGAAATTTGGTTTTTGGACATAACTTTGTTATTTGTCGAAAATTTCCAACTAAACATAAATTTTTGAATTTGCCACGTTTAGAGCTTCAAAATGAGTATAATCATGACCTACTTTCCAGAAGCTTCCTAATTTCGGACCCCTATGCGCCTTTAAAGTCGAAGATTCAAAATGGGCGGAGTCTAGTCTTGTTTATGCTCATTTCGAAGCTCATAACAAGTTGATTTCAAAAATGCAACATTCGTTACTAGGATATTGCAAAATAACATAAATAGGACCGAAACATGGGATATTTGGAATTTTAGAAAATTTTATTTTTCCCCTAATTTCCTTTATTTTTGATATTTTGAGCAGCCAACTGTACCACAAATTTTCTTTAACGACAAGCTTCAAAATGAGTATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>499 301 200</canonical_bands>
                <polymorphic_bands>800 200</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>330 199 135 124 121 46 45</canonical_bands>
                <polymorphic_bands>465 199 124 121 46 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATGAGTTCAGGTACGTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTGGGAAATTCTGAGTCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>964</pcr_amplicon_size>
		<canonical_amplicon>GGATGAGTTCAGGTACGTTTTTTCGCTAGGTACAGTAATACGAGTAAACTGCAAAACTTAGATTTGAGTTTGGCTCAATGAGAGCTTCAAAATGGTACCCCACAAGCCTAGGTTTGACGCAGAGGCGTTATTTTGGACACCTATGCGCCTTTAAAGTCAAAATTTCAAAATGGGCGGAGTCTAGTCTTGTTTATACTCATTTCGAAGCCCATAACGTCCGAATTT</canonical_amplicon>
		<polymorphic_amplicon>GGATGAGTTCAGGTACGTTTTTTCGCTAGGTACAGTAATACGAGTAAACTGCAAAACTTAGATTTGAGTTTGGCTCAATGAGAGCTTCAAAATGGTACCCCACAAGCCTAGGTTTGACGCAGAGGCGTTATTTTGGACACCTATGCGCCTTTAAAGTCAAAATTTCAAAATGGGCGGAGTCTAGTCTTGTTTATACTCATTTYGAAGCCCATAACGTCCGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25170</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>830485</contig_pos>
        <strand></strand>
        <context>atttygaagc[C/T]cataacgtcc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATTTCAAAATGGGCGGAGTCTAGTCTTGTTTATACTCATTTCGAAGC</left_flank>
        <right_flank>CATAACGTCCGAATTTTGAAAATGCAAGTTTTATGCAGAAATTCGTTAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGCACATTCAATATTTTGTAAATCAATCTACCCAACGGCTTTATCCACTCGGAATACATGAAAATGATGCGTATTTCTATGTGGATACTGTAGGATCTCTGGATTTTGTCACTATCGACGTCCGATTCCCAAATAATTGGCACAAAATTGGCCAATTTTCTCGAGAAGACGTTTCTTATGGATTTCCAGCACTTTCTCCAGATGCTAATTTCATTTTTGTGCTCTTTTTGAAAATGGCAGATGACTGCGTTTTTGGTGTCAAGCGAATTCACTTGGAAACTGGAAAAGAGGATGAGTTCAGGTACGTTTTTTCGCTAGGTACAGTAATACGAGTAAACTGCAAAACTTAGATTTGAGTTTGGCTCAATGAGAGCTTCAAAATGGTACCCCACAAGCCTAGGTTTGACGCAGAGGCGTTATTTTGGACACCTATGCGCCTTTAAAGTCAAAATTTCAAAATGGGCGGAGTCTAGTCTTGTTTATACTCATTTCGAAGCCCATAACGTCCGAATTTTGAAAATGCAAGTTTTATGCAGAAATTCGTTAAAACGAACGAGTTAGGACCAAATCAATATTTTTGTGAAAAAATGCGAAATTTGGTTTTTGGACATAACTTTGTTATTTGTCGAAAATTTCCAACTAAACATAAATTTTTGAATTTGCCACGTTTAGAGCTTCAAAATGAGTATAATCATGACCTACTTTCCAGAAGCTTCCTAATTTCGGACCCCTATGCGCCTTTAAAGTCGAAGATTCAAAATGGGCGGAGTCTAGTCTTGTTTATGCTCATTTCGAAGCTCATAACAAGTTGATTTCAAAAATGCAACATTCGTTACTAGGATATTGCAAAATAACATAAATAGGACCGAAACATGGGATATTTGGAATTTTAGAAAATTTTATTTTTCCCCTAATTTCCTTTATTTTTGATATTTTGAGCAGCCAACTGTACCACAAATTTTCTTTAACGACAAGCTTCAAAATGAGTATAATCATGA</canonical>
            <polymorphic>TATGCACATTCAATATTTTGTAAATCAATCTACCCAACGGCTTTATCCACTCGGAATACATGAAAATGATGCGTATTTCTATGTGGATACTGTAGGATCTCTGGATTTTGTCACTATCGACGTCCGATTCCCAAATAATTGGCACAAAATTGGCCAATTTTCTCGAGAAGACGTTTCTTATGGATTTCCAGCACTTTCTCCAGATGCTAATTTCATTTTTGTGCTCTTTTTGAAAATGGCAGATGACTGCGTTTTTGGTGTCAAGCGAATTCACTTGGAAACTGGAAAAGAGGATGAGTTCAGGTACGTTTTTTCGCTAGGTACAGTAATACGAGTAAACTGCAAAACTTAGATTTGAGTTTGGCTCAATGAGAGCTTCAAAATGGTACCCCACAAGCCTAGGTTTGACGCAGAGGCGTTATTTTGGACACCTATGCGCCTTTAAAGTCAAAATTTCAAAATGGGCGGAGTCTAGTCTTGTTTATACTCATTTCGAAGCYCATAACGTCCGAATTTTGAAAATGCAAGTTTTATGCAGAAATTCGTTAAAACGAACGAGTTAGGACCAAATCAATATTTTTGTGAAAAAATGCGAAATTTGGTTTTTGGACATAACTTTGTTATTTGTCGAAAATTTCCAACTAAACATAAATTTTTGAATTTGCCACGTTTAGAGCTTCAAAATGAGTATAATCATGACCTACTTTCCAGAAGCTTCCTAATTTCGGACCCCTATGCGCCTTTAAAGTCGAAGATTCAAAATGGGCGGAGTCTAGTCTTGTTTATGCTCATTTCGAAGCTCATAACAAGTTGATTTCAAAAATGCAACATTCGTTACTAGGATATTGCAAAATAACATAAATAGGACCGAAACATGGGATATTTGGAATTTTAGAAAATTTTATTTTTCCCCTAATTTCCTTTATTTTTGATATTTTGAGCAGCCAACTGTACCACAAATTTTCTTTAACGACAAGCTTCAAAATGAGTATAATCATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>211 178 145 113 101 85 40 38 33 23 22 11</canonical_bands>
                <polymorphic_bands>279 211 145 113 85 40 38 33 23 22 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATGAGTTCAGGTACGTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTGGGAAATTCTGAGTCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>964</pcr_amplicon_size>
		<canonical_amplicon>GGATGAGTTCAGGTACGTTTTTTCGCTAGGTACAGTAATACGAGTAAACTGCAAAACTTAGATTTGAGTTTGGCTCAATGAGAGCTTCAAAATGGTACCCCACAAGCCTAGGTTTGACGCAGAGGCGTTATTTTGGACACCTATGCGCCTTTAAAGTCAAAATTTCAAAATGGGCGGAGTCTAGTCTTGTTTATACTCATTTCGAAGCCCATAACGTCCGAATTTTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGATGAGTTCAGGTACGTTTTTTCGCTAGGTACAGTAATACGAGTAAACTGCAAAACTTAGATTTGAGTTTGGCTCAATGAGAGCTTCAAAATGGTACCCCACAAGCCTAGGTTTGACGCAGAGGCGTTATTTTGGACACCTATGCGCCTTTAAAGTCAAAATTTCAAAATGGGCGGAGTCTAGTCTTGTTTATACTCATTTCGAAGCYCATAACGTCCGAATTTTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25171</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>830503</contig_pos>
        <strand></strand>
        <context>tccgaatttt[G/A]aaaatgcaag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAGTCTAGTCTTGTTTATACTCATTTCGAAGCCCATAACGTCCGAATTTT</left_flank>
        <right_flank>AAAATGCAAGTTTTATGCAGAAATTCGTTAAAACGAACGAGTTAGGACCA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTAAATCAATCTACCCAACGGCTTTATCCACTCGGAATACATGAAAATGATGCGTATTTCTATGTGGATACTGTAGGATCTCTGGATTTTGTCACTATCGACGTCCGATTCCCAAATAATTGGCACAAAATTGGCCAATTTTCTCGAGAAGACGTTTCTTATGGATTTCCAGCACTTTCTCCAGATGCTAATTTCATTTTTGTGCTCTTTTTGAAAATGGCAGATGACTGCGTTTTTGGTGTCAAGCGAATTCACTTGGAAACTGGAAAAGAGGATGAGTTCAGGTACGTTTTTTCGCTAGGTACAGTAATACGAGTAAACTGCAAAACTTAGATTTGAGTTTGGCTCAATGAGAGCTTCAAAATGGTACCCCACAAGCCTAGGTTTGACGCAGAGGCGTTATTTTGGACACCTATGCGCCTTTAAAGTCAAAATTTCAAAATGGGCGGAGTCTAGTCTTGTTTATACTCATTTCGAAGCCCATAACGTCCGAATTTTGAAAATGCAAGTTTTATGCAGAAATTCGTTAAAACGAACGAGTTAGGACCAAATCAATATTTTTGTGAAAAAATGCGAAATTTGGTTTTTGGACATAACTTTGTTATTTGTCGAAAATTTCCAACTAAACATAAATTTTTGAATTTGCCACGTTTAGAGCTTCAAAATGAGTATAATCATGACCTACTTTCCAGAAGCTTCCTAATTTCGGACCCCTATGCGCCTTTAAAGTCGAAGATTCAAAATGGGCGGAGTCTAGTCTTGTTTATGCTCATTTCGAAGCTCATAACAAGTTGATTTCAAAAATGCAACATTCGTTACTAGGATATTGCAAAATAACATAAATAGGACCGAAACATGGGATATTTGGAATTTTAGAAAATTTTATTTTTCCCCTAATTTCCTTTATTTTTGATATTTTGAGCAGCCAACTGTACCACAAATTTTCTTTAACGACAAGCTTCAAAATGAGTATAATCATGACCTAGTTTTCCTGAATTT</canonical>
            <polymorphic>TGTAAATCAATCTACCCAACGGCTTTATCCACTCGGAATACATGAAAATGATGCGTATTTCTATGTGGATACTGTAGGATCTCTGGATTTTGTCACTATCGACGTCCGATTCCCAAATAATTGGCACAAAATTGGCCAATTTTCTCGAGAAGACGTTTCTTATGGATTTCCAGCACTTTCTCCAGATGCTAATTTCATTTTTGTGCTCTTTTTGAAAATGGCAGATGACTGCGTTTTTGGTGTCAAGCGAATTCACTTGGAAACTGGAAAAGAGGATGAGTTCAGGTACGTTTTTTCGCTAGGTACAGTAATACGAGTAAACTGCAAAACTTAGATTTGAGTTTGGCTCAATGAGAGCTTCAAAATGGTACCCCACAAGCCTAGGTTTGACGCAGAGGCGTTATTTTGGACACCTATGCGCCTTTAAAGTCAAAATTTCAAAATGGGCGGAGTCTAGTCTTGTTTATACTCATTTCGAAGCCCATAACGTCCGAATTTTRAAAATGCAAGTTTTATGCAGAAATTCGTTAAAACGAACGAGTTAGGACCAAATCAATATTTTTGTGAAAAAATGCGAAATTTGGTTTTTGGACATAACTTTGTTATTTGTCGAAAATTTCCAACTAAACATAAATTTTTGAATTTGCCACGTTTAGAGCTTCAAAATGAGTATAATCATGACCTACTTTCCAGAAGCTTCCTAATTTCGGACCCCTATGCGCCTTTAAAGTCGAAGATTCAAAATGGGCGGAGTCTAGTCTTGTTTATGCTCATTTCGAAGCTCATAACAAGTTGATTTCAAAAATGCAACATTCGTTACTAGGATATTGCAAAATAACATAAATAGGACCGAAACATGGGATATTTGGAATTTTAGAAAATTTTATTTTTCCCCTAATTTCCTTTATTTTTGATATTTTGAGCAGCCAACTGTACCACAAATTTTCTTTAACGACAAGCTTCAAAATGAGTATAATCATGACCTAGTTTTCCTGAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATGAGTTCAGGTACGTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTGGGAAATTCTGAGTCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>964</pcr_amplicon_size>
		<canonical_amplicon>GGATGAGTTCAGGTACGTTTTTTCGCTAGGTACAGTAATACGAGTAAACTGCAAAACTTAGATTTGAGTTTGGCTCAATGAGAGCTTCAAAATGGTACCCCACAAGCCTAGGTTTGACGCAGAGGCGTTATTTTGGACACCTATGCGCCTTTAAAGTCAAAATTTCAAAATGGGCGGAGTCTAGTCTTGTTTATACTCATTTCGAAGCCCATAACGTCCGAATTTTGAAAATGCAAGTTTTATGCAGAA</canonical_amplicon>
		<polymorphic_amplicon>GGATGAGTTCAGGTACGTTTTTTCGCTAGGTACAGTAATACGAGTAAACTGCAAAACTTAGATTTGAGTTTGGCTCAATGAGAGCTTCAAAATGGTACCCCACAAGCCTAGGTTTGACGCAGAGGCGTTATTTTGGACACCTATGCGCCTTTAAAGTCAAAATTTCAAAATGGGCGGAGTCTAGTCTTGTTTATACTCATTTCGAAGCCCATAACGTCCGAATTTTRAAAATGCAAGTTTTATGCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25173</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>856485</contig_pos>
        <strand></strand>
        <context>ttgtttgata[C/T]acacaacatt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAGAAAAAAGTTGTCAACTGCAAAACTGAAGCTCTAATGTTGTTTGATA</left_flank>
        <right_flank>ACACAACATTTTTCAAAAAGATTAGAGTAAGCTAAATTATTTTGCTGGAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAGCTCTGAAGCCTCCTGGCTGTCTGGACAGCAGCGATGAAGGTTGAGAAAGATATTTGTCTAGAAAAATGAGTGTAGTTTGGTTTAAAATTGAGATATCACAAAAATTCAAAATAGAGGTTATAGGGCTTGAAAAGAGCTACAAAATGATAAAATAAACACTATGTTTTGAATTTTGGGGCTTTTATTAAAGGGGGTATAGCCTCCCTAGGTAAAAGGTATGTAACTATCTTCCAATTAGAGATTTTCGAAAACTTTAAAATTAGTACTGTAGGGTTTCAGAGGACCTACAAAACGATATAAAATTTGAATTTTTGCAATACTTAGTTTTTTAGATTTGCGCCTTTAAAGTTGACGCGGCGCCAGCCCGGGGGGAGGGGGGTTGGGGAAGGCGCCTGGTGAGCGGCGCTTCAAGTTTAAAGGCGCATAACTCAAAAACTACGGTAGATAGAAAAAAGTTGTCAACTGCAAAACTGAAGCTCTAATGTTGTTTGATACACACAACATTTTTCAAAAAGATTAGAGTAAGCTAAATTATTTTGCTGGAACTCCAAAATTAAAAAAGGTTTTTTTTTGAAATAATGGGGAAATGTAACTTTCTCAAATGTTTTTATGTGTTCAAACTTTTCAGATTATGATGAAATTTACAAAACAAAACTAGAGCTTCATTTTGCAATCAACATATCTTTTTTAGCTATAATAGTTTTCGAGATATGCTCCTTTAAAGATAACACACCTCTTATTTGGGAGAGGGGGGGGGGCGTGCCAACTTTAAAGGCGCATATCTCAAAAACTAGGCTAGCTATGAAAAATCAATCAACTGCAAAAATGAAGCTCTAGTTTTGATTCATGTATTCTGGAAATTTCAGACAAAAATGTTCGAAAGCTTTTAAGTTATGGTATTTCTAAACAAAAAAGGTGCGAACTCGATTTTTTGCATCTTTTATAAAAGTTTAAGAAAAGGACCATACATTTCGCCAAGTGCATCTTTGAGCAAA</canonical>
            <polymorphic>ATAAGCTCTGAAGCCTCCTGGCTGTCTGGACAGCAGCGATGAAGGTTGAGAAAGATATTTGTCTAGAAAAATGAGTGTAGTTTGGTTTAAAATTGAGATATCACAAAAATTCAAAATAGAGGTTATAGGGCTTGAAAAGAGCTACAAAATGATAAAATAAACACTATGTTTTGAATTTTGGGGCTTTTATTAAAGGGGGTATAGCCTCCCTAGGTAAAAGGTATGTAACTATCTTCCAATTAGAGATTTTCGAAAACTTTAAAATTAGTACTGTAGGGTTTCAGAGGACCTACAAAACGATATAAAATTTGAATTTTTGCAATACTTAGTTTTTTAGATTTGCGCCTTTAAAGTTGACGCGGCGCCAGCCCGGGGGGAGGGGGGTTGGGGAAGGCGCCTGGTGAGCGGCGCTTCAAGTTTAAAGGCGCATAACTCAAAAACTACGGTAGATAGAAAAAAGTTGTCAACTGCAAAACTGAAGCTCTAATGTTGTTTGATAYACACAACATTTTTCAAAAAGATTAGAGTAAGCTAAATTATTTTGCTGGAACTCCAAAATTAAAAAAGGTTTTTTTTTGAAATAATGGGGAAATGTAACTTTCTCAAATGTTTTTATGTGTTCAAACTTTTCAGATTATGATGAAATTTACAAAACAAAACTAGAGCTTCATTTTGCAATCAACATATCTTTTTTAGCTATAATAGTTTTCGAGATATGCTCCTTTAAAGATAACACACCTCTTATTTGGGAGAGGGGGGGGGGCGTGCCAACTTTAAAGGCGCATATCTCAAAAACTAGGCTAGCTATGAAAAATCAATCAACTGCAAAAATGAAGCTCTAGTTTTGATTCATGTATTCTGGAAATTTCAGACAAAAATGTTCGAAAGCTTTTAAGTTATGGTATTTCTAAACAAAAAAGGTGCGAACTCGATTTTTTGCATCTTTTATAAAAGTTTAAGAAAAGGACCATACATTTCGCCAAGTGCATCTTTGAGCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>240 156 116 116 98 77 63 60 30 26 14 2 2</canonical_bands>
                <polymorphic_bands>240 156 116 116 100 77 63 60 30 26 14 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGACCTACAAAACGATATAAA</pcr_primer_p1>
		<pcr_primer_p2>GTTACATTTCCCCATTATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>315</pcr_amplicon_size>
		<canonical_amplicon>GAGGACCTACAAAACGATATAAAATTTGAATTTTTGCAATACTTAGTTTTTTAGATTTGCGCCTTTAAAGTTGACGCGGCGCCAGCCCGGGGGGAGGGGGGTTGGGGAAGGCGCCTGGTGAGCGGCGCTTCAAGTTTAAAGGCGCATAACTCAAAAACTACGGTAGATAGAAAAAAGTTGTCAACTGCAAAACTGAAGCTCTAATGTTGTTTGATACACACAACATTTTTCAAAAAGATTAGAGTAAGCTAAATTATTTTGCTGGAACTCCAAAATTAAAAAAGGTTTTTTTTTGAAATAATGGGGAAATGTAAC</canonical_amplicon>
		<polymorphic_amplicon>GAGGACCTACAAAACGATATAAAATTTGAATTTTTGCAATACTTAGTTTTTTAGATTTGCGCCTTTAAAGTTGACGCGGCGCCAGCCCGGGGGGAGGGGGGTTGGGGAAGGCGCCTGGTGAGCGGCGCTTCAAGTTTAAAGGCGCATAACTCAAAAACTACGGTAGATAGAAAAAAGTTGTCAACTGCAAAACTGAAGCTCTAATGTTGTTTGATAYACACAACATTTTTCAAAAAGATTAGAGTAAGCTAAATTATTTTGCTGGAACTCCAAAATTAAAAAAGGTTTTTTTTTGAAATAATGGGGAAATGTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25174</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>856505</contig_pos>
        <strand></strand>
        <context>ttttcaaaaa[G/A]attagagtaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GCAAAACTGAAGCTCTAATGTTGTTTGATACACACAACATTTTTCAAAAA</left_flank>
        <right_flank>ATTAGAGTAAGCTAAATTATTTTGCTGGAACTCCAAAATTAAAAAAGGTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTGTCTGGACAGCAGCGATGAAGGTTGAGAAAGATATTTGTCTAGAAAAATGAGTGTAGTTTGGTTTAAAATTGAGATATCACAAAAATTCAAAATAGAGGTTATAGGGCTTGAAAAGAGCTACAAAATGATAAAATAAACACTATGTTTTGAATTTTGGGGCTTTTATTAAAGGGGGTATAGCCTCCCTAGGTAAAAGGTATGTAACTATCTTCCAATTAGAGATTTTCGAAAACTTTAAAATTAGTACTGTAGGGTTTCAGAGGACCTACAAAACGATATAAAATTTGAATTTTTGCAATACTTAGTTTTTTAGATTTGCGCCTTTAAAGTTGACGCGGCGCCAGCCCGGGGGGAGGGGGGTTGGGGAAGGCGCCTGGTGAGCGGCGCTTCAAGTTTAAAGGCGCATAACTCAAAAACTACGGTAGATAGAAAAAAGTTGTCAACTGCAAAACTGAAGCTCTAATGTTGTTTGATACACACAACATTTTTCAAAAAGATTAGAGTAAGCTAAATTATTTTGCTGGAACTCCAAAATTAAAAAAGGTTTTTTTTTGAAATAATGGGGAAATGTAACTTTCTCAAATGTTTTTATGTGTTCAAACTTTTCAGATTATGATGAAATTTACAAAACAAAACTAGAGCTTCATTTTGCAATCAACATATCTTTTTTAGCTATAATAGTTTTCGAGATATGCTCCTTTAAAGATAACACACCTCTTATTTGGGAGAGGGGGGGGGGCGTGCCAACTTTAAAGGCGCATATCTCAAAAACTAGGCTAGCTATGAAAAATCAATCAACTGCAAAAATGAAGCTCTAGTTTTGATTCATGTATTCTGGAAATTTCAGACAAAAATGTTCGAAAGCTTTTAAGTTATGGTATTTCTAAACAAAAAAGGTGCGAACTCGATTTTTTGCATCTTTTATAAAAGTTTAAGAAAAGGACCATACATTTCGCCAAGTGCATCTTTGAGCAAACACTTCTATTGCCATTTCAC</canonical>
            <polymorphic>GCTGTCTGGACAGCAGCGATGAAGGTTGAGAAAGATATTTGTCTAGAAAAATGAGTGTAGTTTGGTTTAAAATTGAGATATCACAAAAATTCAAAATAGAGGTTATAGGGCTTGAAAAGAGCTACAAAATGATAAAATAAACACTATGTTTTGAATTTTGGGGCTTTTATTAAAGGGGGTATAGCCTCCCTAGGTAAAAGGTATGTAACTATCTTCCAATTAGAGATTTTCGAAAACTTTAAAATTAGTACTGTAGGGTTTCAGAGGACCTACAAAACGATATAAAATTTGAATTTTTGCAATACTTAGTTTTTTAGATTTGCGCCTTTAAAGTTGACGCGGCGCCAGCCCGGGGGGAGGGGGGTTGGGGAAGGCGCCTGGTGAGCGGCGCTTCAAGTTTAAAGGCGCATAACTCAAAAACTACGGTAGATAGAAAAAAGTTGTCAACTGCAAAACTGAAGCTCTAATGTTGTTTGATACACACAACATTTTTCAAAAARATTAGAGTAAGCTAAATTATTTTGCTGGAACTCCAAAATTAAAAAAGGTTTTTTTTTGAAATAATGGGGAAATGTAACTTTCTCAAATGTTTTTATGTGTTCAAACTTTTCAGATTATGATGAAATTTACAAAACAAAACTAGAGCTTCATTTTGCAATCAACATATCTTTTTTAGCTATAATAGTTTTCGAGATATGCTCCTTTAAAGATAACACACCTCTTATTTGGGAGAGGGGGGGGGGCGTGCCAACTTTAAAGGCGCATATCTCAAAAACTAGGCTAGCTATGAAAAATCAATCAACTGCAAAAATGAAGCTCTAGTTTTGATTCATGTATTCTGGAAATTTCAGACAAAAATGTTCGAAAGCTTTTAAGTTATGGTATTTCTAAACAAAAAAGGTGCGAACTCGATTTTTTGCATCTTTTATAAAAGTTTAAGAAAAGGACCATACATTTCGCCAAGTGCATCTTTGAGCAAACACTTCTATTGCCATTTCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGACCTACAAAACGATATAAA</pcr_primer_p1>
		<pcr_primer_p2>GTTACATTTCCCCATTATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>315</pcr_amplicon_size>
		<canonical_amplicon>GAGGACCTACAAAACGATATAAAATTTGAATTTTTGCAATACTTAGTTTTTTAGATTTGCGCCTTTAAAGTTGACGCGGCGCCAGCCCGGGGGGAGGGGGGTTGGGGAAGGCGCCTGGTGAGCGGCGCTTCAAGTTTAAAGGCGCATAACTCAAAAACTACGGTAGATAGAAAAAAGTTGTCAACTGCAAAACTGAAGCTCTAATGTTGTTTGATACACACAACATTTTTCAAAAAGATTAGAGTAAGCTAAATTATTTTGCTGGAACTCCAAAATTAAAAAAGGTTTTTTTTTGAAATAATGGGGAAATGTAAC</canonical_amplicon>
		<polymorphic_amplicon>GAGGACCTACAAAACGATATAAAATTTGAATTTTTGCAATACTTAGTTTTTTAGATTTGCGCCTTTAAAGTTGACGCGGCGCCAGCCCGGGGGGAGGGGGGTTGGGGAAGGCGCCTGGTGAGCGGCGCTTCAAGTTTAAAGGCGCATAACTCAAAAACTACGGTAGATAGAAAAAAGTTGTCAACTGCAAAACTGAAGCTCTAATGTTGTTTGATACACACAACATTTTTCAAAAARATTAGAGTAAGCTAAATTATTTTGCTGGAACTCCAAAATTAAAAAAGGTTTTTTTTTGAAATAATGGGGAAATGTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25175</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>872430</contig_pos>
        <strand></strand>
        <context>gaaattagca[G/T]accgaaaatg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAGACCCAGTTGGGTCTGCTAGACTACAAACTACAAAATTGAAATTAGCA</left_flank>
        <right_flank>ACCGAAAATGCATTTCTATTCTAAAATCCGTCATTTTTGCTCAAAATTAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGTGAAAATGAAAATTGGGTCTGCTAGACTACAAACTACATTTTTCAAGAAATCGAGCTTGGTAGGATTCCCTAGTTGGTATGCTAGCTCCGAAAATGTAGTTTGTAGTCTGGCATATCAGACAAGTTTCCGTGGAGCCTAGGATCTAGACTACAAACTATAAAATTGGAATTAGCAGAGCCAACATTTTTTAGAGCGTTTTTTGAGCATTTTTCTCGATTGTAGGCTTATTTTTGCTCAATTTTTCGAATGAAGACGTCAGACTCCTGGTTTTTCCTTTCTTAGAAGTGGAAAAAAATGACAAAATGGTGGTGAAAAATGAAAATTGGTCTGCTAGACTACAAACTACAATTCTCAAGAAATCGAGCTTGGCAGGATTCCCTTGTTGGTATGCTAGCTCCGCAGATGTAGTTTGTAGTCTGCCAGAATTAACGATTCCCGAGATAGCAGACCCAGTTGGGTCTGCTAGACTACAAACTACAAAATTGAAATTAGCAGACCGAAAATGCATTTCTATTCTAAAATCCGTCATTTTTGCTCAAAATTAATTATTTAAAATCGATTCTAGTCTAGTTTTTGTTCATTTTTCCACACCTGCAACCGCAAATTGCATCCAACACCTCCAACGATGAGCAATTCACGACTTCCAGTGTGTGCCATCGCTCTTTCAGTGATCTCGATGAGCATAGCGAAAACTGTCTCCTGGAGGGAGAAGCACAGGTCCGCCGGTGTGTATTCTCTAGATTCTAGGAGTTGTGGAGCGCGGGATTCGATGCAAGACAGGATTCCCGATAAGGAGACGTCCATTCCCTGGAAATTTTGAAAAATTTTATTTGGCCATTTTAGGCCTAAAAATTTCAGATTTTCAGGAATTTTTTAAACTTGCCTTGACGGTATATGGTAGCTCGAAGAGCTTAGCTCCAGATTTTGCCAGTTGCTCAATATTATATCCAGGCGATGGAGCATTTGGAAGCTTCAAAACTCGAGCAAATCGATCC</canonical>
            <polymorphic>TGAGTGAAAATGAAAATTGGGTCTGCTAGACTACAAACTACATTTTTCAAGAAATCGAGCTTGGTAGGATTCCCTAGTTGGTATGCTAGCTCCGAAAATGTAGTTTGTAGTCTGGCATATCAGACAAGTTTCCGTGGAGCCTAGGATCTAGACTACAAACTATAAAATTGGAATTAGCAGAGCCAACATTTTTTAGAGCGTTTTTTGAGCATTTTTCTCGATTGTAGGCTTATTTTTGCTCAATTTTTCGAATGAAGACGTCAGACTCCTGGTTTTTCCTTTCTTAGAAGTGGAAAAAAATGACAAAATGGTGGTGAAAAATGAAAATTGGTCTGCTAGACTACAAACTACAATTCTCAAGAAATCGAGCTTGGCAGGATTCCCTTGTTGGTATGCTAGCTCCGCAGATGTAGTTTGTAGTCTGCCAGAATTAACGATTCCCGAGATAGCAGACCCAGTTGGGTCTGCTAGACTACAAACTACAAAATTGAAATTAGCAKACCGAAAATGCATTTCTATTCTAAAATCCGTCATTTTTGCTCAAAATTAATTATTTAAAATCGATTCTAGTCTAGTTTTTGTTCATTTTTCCACACCTGCAACCGCAAATTGCATCCAACACCTCCAACGATGAGCAATTCACGACTTCCAGTGTGTGCCATCGCTCTTTCAGTGATCTCGATGAGCATAGCGAAAACTGTCTCCTGGAGGGAGAAGCACAGGTCCGCCGGTGTGTATTCTCTAGATTCTAGGAGTTGTGGAGCGCGGGATTCGATGCAAGACAGGATTCCCGATAAGGAGACGTCCATTCCCTGGAAATTTTGAAAAATTTTATTTGGCCATTTTAGGCCTAAAAATTTCAGATTTTCAGGAATTTTTTAAACTTGCCTTGACGGTATATGGTAGCTCGAAGAGCTTAGCTCCAGATTTTGCCAGTTGCTCAATATTATATCCAGGCGATGGAGCATTTGGAAGCTTCAAAACTCGAGCAAATCGATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTGGTGAAAAATGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGGAAAAATGAACAAAAACTAGA</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>TGGTGGTGAAAAATGAAAATTGGTCTGCTAGACTACAAACTACAATTCTCAAGAAATCGAGCTTGGCAGGATTCCCTTGTTGGTATGCTAGCTCCGCAGATGTAGTTTGTAGTCTGCCAGAATTAACGATTCCCGAGATAGCAGACCCAGTTGGGTCTGCTAGACTACAAACTACAAAATTGAAATTAGCAGACCGAAAATGCATTTCTATTCTAAAATCCGTCATTTTTGCTCAAAATTAATTATTTAAAATCGATTCTAGTCTAGTTTTTGTTCATTTTTCCA</canonical_amplicon>
		<polymorphic_amplicon>TGGTGGTGAAAAATGAAAATTGGTCTGCTAGACTACAAACTACAATTCTCAAGAAATCGAGCTTGGCAGGATTCCCTTGTTGGTATGCTAGCTCCGCAGATGTAGTTTGTAGTCTGCCAGAATTAACGATTCCCGAGATAGCAGACCCAGTTGGGTCTGCTAGACTACAAACTACAAAATTGAAATTAGCAKACCGAAAATGCATTTCTATTCTAAAATCCGTCATTTTTGCTCAAAATTAATTATTTAAAATCGATTCTAGTCTAGTTTTTGTTCATTTTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25176</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>872805</contig_pos>
        <strand>+</strand>
        <context>TTTTCWGGAA[C/T]TTTTTAAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATTTTATTTGGCCATTTTAGGCCTAAAAATTTCAGATTTTCAGGAA</left_flank>
        <right_flank>TTTTTAAACTTGCCTTGACGGTATATGGTAGCTCGAAGAGCTTAGCTCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGATTCCCTTGTTGGTATGCTAGCTCCGCAGATGTAGTTTGTAGTCTGCCAGAATTAACGATTCCCGAGATAGCAGACCCAGTTGGGTCTGCTAGACTACAAACTACAAAATTGAAATTAGCAGACCGAAAATGCATTTCTATTCTAAAATCCGTCATTTTTGCTCAAAATTAATTATTTAAAATCGATTCTAGTCTAGTTTTTGTTCATTTTTCCACACCTGCAACCGCAAATTGCATCCAACACCTCCAACGATGAGCAATTCACGACTTCCAGTGTGTGCCATCGCTCTTTCAGTGATCTCGATGAGCATAGCGAAAACTGTCTCCTGGAGGGAGAAGCACAGGTCCGCCGGTGTGTATTCTCTAGATTCTAGGAGTTGTGGAGCGCGGGATTCGATGCAAGACAGGATTCCCGATAAGGAGACGTCCATTCCCTGGAAATTTTGAAAAATTTTATTTGGCCATTTTAGGCCTAAAAATTTCAGATTTTCAGGAATTTTTTAAACTTGCCTTGACGGTATATGGTAGCTCGAAGAGCTTAGCTCCAGATTTTGCCAGTTGCTCAATATTATATCCAGGCGATGGAGCATTTGGAAGCTTCAAAACTCGAGCAAATCGATCCAAACAATTTCCGACGGCGATATCAATGGTCTCACCGAAGATACGGTAGCGCTTGTTGGGTAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTACAATTTCATAAATAGCAGACCAAAACCAAAAAAAAGCCCACTTTTCGTGTAAAATTTGTTATTTTTT</canonical>
            <polymorphic>AGGATTCCCTTGTTGGTATGCTAGCTCCGCAGATGTAGTTTGTAGTCTGCCAGAATTAACGATTCCCGAGATAGCAGACCCAGTTGGGTCTGCTAGACTACAAACTACAAAATTGAAATTAGCAGACCGAAAATGCATTTCTATTCTAAAATCCGTCATTTTTGCTCAAAATTAATTATTTAAAATCGATTCTAGTCTAGTTTTTGTTCATTTTTCCACACCTGCAACCGCAAATTGCATCCAACACCTCCAACGATGAGCAATTCACGACTTCCAGTGTGTGCCATCGCTCTTTCAGTGATCTCGATGAGCATAGCGAAAACTGTCTCCTGGAGGGAGAAGCACAGGTCCGCCGGTGTGTATTCTCTAGATTCTAGGAGTTGTGGAGCGCGGGATTCGATGCAAGACAGGATTCCCGATAAGGAGACGTCCATTCCCTGGAAATTTTGAAAAATTTTATTTGGCCATTTTAGGCCTAAAAATTTCAGATTTTCAGGAAYTTTTTAAACTTGCCTTGACGGTATATGGTAGCTCGAAGAGCTTAGCTCCAGATTTTGCCAGTTGCTCAATATTATATCCAGGCGATGGAGCATTTGGAAGCTTCAAAACTCGAGCAAATCGATCCAAACAATTTCCGACGGCGATATCAATGGTCTCACCGAAGATACGGTAGCGCTTGTTGGGTAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTACAATTTCATAAATAGCAGACCAAAACCAAAAAAAAGCCCACTTTTCGTGTAAAATTTGTTATTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>488 442 28 17 15 10</canonical_bands>
                <polymorphic_bands>505 442 28 15 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>305 181 132 59 57 53 53 51 29 28 17 15 10 6 4</canonical_bands>
                <polymorphic_bands>305 181 149 59 57 53 53 51 29 28 15 10 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGGTGTGTATTCTCTAGATTC</pcr_primer_p1>
		<pcr_primer_p2>CCTGGATATAATATTGAGCAACT</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>CCGGTGTGTATTCTCTAGATTCTAGGAGTTGTGGAGCGCGGGATTCGATGCAAGACAGGATTCCCGATAAGGAGACGTCCATTCCCTGGAAATTTTGAAAAATTTTATTTGGCCATTTTAGGCCTAAAAATTTCAGATTTTCAGGAATTTTTTAAACTTGCCTTGACGGTATATGGTAGCTCGAAGAGCTTAGCTCCAGATTTTGCCAGTTGCTCAATATTATATCCAGG</canonical_amplicon>
		<polymorphic_amplicon>CCGGTGTGTATTCTCTAGATTCTAGGAGTTGTGGAGCGCGGGATTCGATGCAAGACAGGATTCCCGATAAGGAGACGTCCATTCCCTGGAAATTTTGAAAAATTTTATTTGGCCATTTTAGGCCTAAAAATTTCAGATTTTCAGGAAYTTTTTAAACTTGCCTTGACGGTATATGGTAGCTCGAAGAGCTTAGCTCCAGATTTTGCCAGTTGCTCAATATTATATCCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25177</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>872831</contig_pos>
        <strand>+</strand>
        <context>TGACGGTATA[C/T]GGTAGCTCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAAAAATTTCAGATTTTCAGGAATTTTTTAAACTTGCCTTGACGGTATA</left_flank>
        <right_flank>GGTAGCTCGAAGAGCTTAGCTCCAGATTTTGCCAGTTGCTCAATATTATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGCAGATGTAGTTTGTAGTCTGCCAGAATTAACGATTCCCGAGATAGCAGACCCAGTTGGGTCTGCTAGACTACAAACTACAAAATTGAAATTAGCAGACCGAAAATGCATTTCTATTCTAAAATCCGTCATTTTTGCTCAAAATTAATTATTTAAAATCGATTCTAGTCTAGTTTTTGTTCATTTTTCCACACCTGCAACCGCAAATTGCATCCAACACCTCCAACGATGAGCAATTCACGACTTCCAGTGTGTGCCATCGCTCTTTCAGTGATCTCGATGAGCATAGCGAAAACTGTCTCCTGGAGGGAGAAGCACAGGTCCGCCGGTGTGTATTCTCTAGATTCTAGGAGTTGTGGAGCGCGGGATTCGATGCAAGACAGGATTCCCGATAAGGAGACGTCCATTCCCTGGAAATTTTGAAAAATTTTATTTGGCCATTTTAGGCCTAAAAATTTCAGATTTTCAGGAATTTTTTAAACTTGCCTTGACGGTATATGGTAGCTCGAAGAGCTTAGCTCCAGATTTTGCCAGTTGCTCAATATTATATCCAGGCGATGGAGCATTTGGAAGCTTCAAAACTCGAGCAAATCGATCCAAACAATTTCCGACGGCGATATCAATGGTCTCACCGAAGATACGGTAGCGCTTGTTGGGTAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTACAATTTCATAAATAGCAGACCAAAACCAAAAAAAAGCCCACTTTTCGTGTAAAATTTGTTATTTTTTCTGAAATTTCTTCAAATTTCAAAAAT</canonical>
            <polymorphic>CCGCAGATGTAGTTTGTAGTCTGCCAGAATTAACGATTCCCGAGATAGCAGACCCAGTTGGGTCTGCTAGACTACAAACTACAAAATTGAAATTAGCAGACCGAAAATGCATTTCTATTCTAAAATCCGTCATTTTTGCTCAAAATTAATTATTTAAAATCGATTCTAGTCTAGTTTTTGTTCATTTTTCCACACCTGCAACCGCAAATTGCATCCAACACCTCCAACGATGAGCAATTCACGACTTCCAGTGTGTGCCATCGCTCTTTCAGTGATCTCGATGAGCATAGCGAAAACTGTCTCCTGGAGGGAGAAGCACAGGTCCGCCGGTGTGTATTCTCTAGATTCTAGGAGTTGTGGAGCGCGGGATTCGATGCAAGACAGGATTCCCGATAAGGAGACGTCCATTCCCTGGAAATTTTGAAAAATTTTATTTGGCCATTTTAGGCCTAAAAATTTCAGATTTTCAGGAATTTTTTAAACTTGCCTTGACGGTATAYGGTAGCTCGAAGAGCTTAGCTCCAGATTTTGCCAGTTGCTCAATATTATATCCAGGCGATGGAGCATTTGGAAGCTTCAAAACTCGAGCAAATCGATCCAAACAATTTCCGACGGCGATATCAATGGTCTCACCGAAGATACGGTAGCGCTTGTTGGGTAGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTACAATTTCATAAATAGCAGACCAAAACCAAAAAAAAGCCCACTTTTCGTGTAAAATTTGTTATTTTTTCTGAAATTTCTTCAAATTTCAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGGTGTGTATTCTCTAGATTC</pcr_primer_p1>
		<pcr_primer_p2>CCTGGATATAATATTGAGCAACT</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>CCGGTGTGTATTCTCTAGATTCTAGGAGTTGTGGAGCGCGGGATTCGATGCAAGACAGGATTCCCGATAAGGAGACGTCCATTCCCTGGAAATTTTGAAAAATTTTATTTGGCCATTTTAGGCCTAAAAATTTCAGATTTTCAGGAATTTTTTAAACTTGCCTTGACGGTATATGGTAGCTCGAAGAGCTTAGCTCCAGATTTTGCCAGTTGCTCAATATTATATCCAGG</canonical_amplicon>
		<polymorphic_amplicon>CCGGTGTGTATTCTCTAGATTCTAGGAGTTGTGGAGCGCGGGATTCGATGCAAGACAGGATTCCCGATAAGGAGACGTCCATTCCCTGGAAATTTTGAAAAATTTTATTTGGCCATTTTAGGCCTAAAAATTTCAGATTTTCAGGAATTTTTTAAACTTGCCTTGACGGTATAYGGTAGCTCGAAGAGCTTAGCTCCAGATTTTGCCAGTTGCTCAATATTATATCCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25178</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>900048</contig_pos>
        <strand>+</strand>
        <context>TCCTCATCAG[A/T]TGGAATCATA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTGGCCCTCTCCTTGGCCTCCTTCTCAGCCGCCGCATCCTCCTCATCAG</left_flank>
        <right_flank>TGGAATCATATAAATCTCGCGAATCTCTTCTGGAGACTTCCCTTTAATCA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGCCGCTAACTTTAAAGGCGCGTAATTGTGCTCAAAATTGAGGAATCTTAAAATTTCAAAAACTTGAATTGTGTAACTCTTCAAGCACTACTTTTGCGCCTTTAAAAACGCGGAGAAGCGAGAGCCCCTTTGAAATAGTGCACAGGGTAACTTTAAAGGCGCATATCTCACGAACCGGTTGAGCTAACAAAAAGATAAAAATACCAAAATGTGTAAAATTTCAAGTTCTATCTTTTGTAAGTTGACCATTTTTATCTAGCTGTTTTAGTTTTGAAGATATGACAAGAAAAATTTATTGATGTTCTAAAAAAGGGGAAAAATAGAGGGGCGTACGGTTTAAGGTACTAGGGGGTAAGTAAGAAAATTCAAATTCAAATAATTATTTGGCATCGGATGTAGATGGTGCTTCTCCTTCTCCAGCAGCAGCAGTCTCTCCAGCAGCCTCTTTCTTGGCCCTCTCCTTGGCCTCCTTCTCAGCCGCCGCATCCTCCTCATCAGTTGGAATCATATAAATCTCGCGAATCTCTTCTGGAGACTTCCCTTTAATCATCATGGCCACCTGCTTGCAGCAATAGGTCAGCAACTCCTTGATCTCCAAATAATTAACAGCAATGACCAAGTCAAACAATTTCCCATCCTTATCAATTCCCTCCAAGAACTTCTGATCCCATTCTGGAACGTTGACCTGTTTTGGAGGCTTGTATCTTCTGGAGGCGTTGGAATCCCCTTGTGATGCTCACACCACTCCACTGCGATCTTGAGAATGTCTCCGTCAATGTTGTCGAATGGGAATGGGTTGGCTTTGGCTTGTTCCTCAGTGTAGCCGAGGTTGGAAATCATTCCATCGATCAGGGCAGAGTGTTGAAGGGCGCCAGCACTGACTTTGATGACGACCTTGTCTTTGCCGTGAACGTAGTAGAACGATTCGGGGGCTTCTGGAGCAGCAACAGATTCTGGGGCAGTGGTTGGTTCAGCAGGGGAAGCAGAAGACGTTCCTTG</canonical>
            <polymorphic>GCGCCGCTAACTTTAAAGGCGCGTAATTGTGCTCAAAATTGAGGAATCTTAAAATTTCAAAAACTTGAATTGTGTAACTCTTCAAGCACTACTTTTGCGCCTTTAAAAACGCGGAGAAGCGAGAGCCCCTTTGAAATAGTGCACAGGGTAACTTTAAAGGCGCATATCTCACGAACCGGTTGAGCTAACAAAAAGATAAAAATACCAAAATGTGTAAAATTTCAAGTTCTATCTTTTGTAAGTTGACCATTTTTATCTAGCTGTTTTAGTTTTGAAGATATGACAAGAAAAATTTATTGATGTTCTAAAAAAGGGGAAAAATAGAGGGGCGTACGGTTTAAGGTACTAGGGGGTAAGTAAGAAAATTCAAATTCAAATAATTATTTGGCATCGGATGTAGATGGTGCTTCTCCTTCTCCAGCAGCAGCAGTCTCTCCAGCAGCCTCTTTCTTGGCCCTCTCCTTGGCCTCCTTCTCAGCCGCCGCATCCTCCTCATCAGWTGGAATCATATAAATCTCGCGAATCTCTTCTGGAGACTTCCCTTTAATCATCATGGCCACCTGCTTGCAGCAATAGGTCAGCAACTCCTTGATCTCCAAATAATTAACAGCAATGACCAAGTCAAACAATTTCCCATCCTTATCAATTCCCTCCAAGAACTTCTGATCCCATTCTGGAACGTTGACCTGTTTTGGAGGCTTGTATCTTCTGGAGGCGTTGGAATCCCCTTGTGATGCTCACACCACTCCACTGCGATCTTGAGAATGTCTCCGTCAATGTTGTCGAATGGGAATGGGTTGGCTTTGGCTTGTTCCTCAGTGTAGCCGAGGTTGGAAATCATTCCATCGATCAGGGCAGAGTGTTGAAGGGCGCCAGCACTGACTTTGATGACGACCTTGTCTTTGCCGTGAACGTAGTAGAACGATTCGGGGGCTTCTGGAGCAGCAACAGATTCTGGGGCAGTGGTTGGTTCAGCAGGGGAAGCAGAAGACGTTCCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGGGGGTAAGTAAGAAAATTCA</pcr_primer_p1>
		<pcr_primer_p2>ATCAAGGAGTTGCTGACCTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TAGGGGGTAAGTAAGAAAATTCAAATTCAAATAATTATTTGGCATCGGATGTAGATGGTGCTTCTCCTTCTCCAGCAGCAGCAGTCTCTCCAGCAGCCTCTTTCTTGGCCCTCTCCTTGGCCTCCTTCTCAGCCGCCGCATCCTCCTCATCAGTTGGAATCATATAAATCTCGCGAATCTCTTCTGGAGACTTCCCTTTAATCATCATGGCCACCTGCTTGCAGCAATAGGTCAGCAACTCCTTGAT</canonical_amplicon>
		<polymorphic_amplicon>TAGGGGGTAAGTAAGAAAATTCAAATTCAAATAATTATTTGGCATCGGATGTAGATGGTGCTTCTCCTTCTCCAGCAGCAGCAGTCTCTCCAGCAGCCTCTTTCTTGGCCCTCTCCTTGGCCTCCTTCTCAGCCGCCGCATCCTCCTCATCAGWTGGAATCATATAAATCTCGCGAATCTCTTCTGGAGACTTCCCTTTAATCATCATGGCCACCTGCTTGCAGCAATAGGTCAGCAACTCCTTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25179</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>901784</contig_pos>
        <strand></strand>
        <context>cctttaaaga[A/T]acagcaccta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAAAATGTTTGCTAGCTACAGTAGTTCAGGAGATATGCGCCTTTAAAGA</left_flank>
        <right_flank>ACAGCACCTAGATAATAAAGGCGCAGAAAGAGTACGCATTCTTTAAAGGC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAATTTCCAGCCAAAAATAGCTTAAAGTAGGTCGAAAATGACTTAAAATAGCTTGAAATTGGTCACAATTACTCTAAAAAGGCTCAAAAATAATCTTAAAATCTCAAAAATTCGTTTAAAACGGTCTAGAAATCACTCTCAAACGACTAAAATAAGAAAAAATCACTTAAAGAGCTCAAAAAGTGCTCAAAATAAGTCGAAAATGGCTTAAAATAGTTCAAAAATGACTTGAAACATGTCAAAAATAGTCCTAGAAAATCCAAAATTTGATCTAAAACAGTTTGAAACCCCCCGTTTTGGTAGATCACTACTGTAGATCACTCCCAAAAAATATCATATAGGATGGCGCCCCCAACTTTAAAGGCGCATAACTCAAAAACTACTGTAGCTAGCAAAGTTTTGAAAATTGTAAATTATAGTACATTTAATTTTCTTCAAAATACAGTTTTAAAATGTTTGCTAGCTACAGTAGTTCAGGAGATATGCGCCTTTAAAGAAACAGCACCTAGATAATAAAGGCGCAGAAAGAGTACGCATTCTTTAAAGGCGCATATCTCAAAAACTACTGTAGTTAGCAAAGTTTTGTAAATTACAAAATTGCTCAACATAAGATTTTACACATTTTGCATTTTTTACAATTTTGATAGCTTTAACGGTTCGCGAGATATGCGCCATTAAAGCTGGCCGCGCCCCCCCCAACCATCTCCTCCCCATTTATTGCTCGCTAGCTTCATACCTCGAAAGCTACGGTAGCTAGTAGAATTTTGCAGCATGTGAATTATAGAAACTGTCATGTTCTTCCTGATTCAATTTATCGCATTTCGATGACTACAGTAGTTCATGAGGCTGCGTCTTTTCCAGTAAGATCTTCCCAGGAGCCAAGAGACTTTGAGATAATGAATCTCAACAGGTGACAGTCCAATTAGTACATAATTAGGCTTTTATGATGGATGGTGGTATTTGAGATGTCACAGACACTCTAGATAAGATGTAAGTAT</canonical>
            <polymorphic>CCAAATTTCCAGCCAAAAATAGCTTAAAGTAGGTCGAAAATGACTTAAAATAGCTTGAAATTGGTCACAATTACTCTAAAAAGGCTCAAAAATAATCTTAAAATCTCAAAAATTCGTTTAAAACGGTCTAGAAATCACTCTCAAACGACTAAAATAAGAAAAAATCACTTAAAGAGCTCAAAAAGTGCTCAAAATAAGTCGAAAATGGCTTAAAATAGTTCAAAAATGACTTGAAACATGTCAAAAATAGTCCTAGAAAATCCAAAATTTGATCTAAAACAGTTTGAAACCCCCCGTTTTGGTAGATCACTACTGTAGATCACTCCCAAAAAATATCATATAGGATGGCGCCCCCAACTTTAAAGGCGCATAACTCAAAAACTACTGTAGCTAGCAAAGTTTTGAAAATTGTAAATTATAGTACATTTAATTTTCTTCAAAATACAGTTTTAAAATGTTTGCTAGCTACAGTAGTTCAGGAGATATGCGCCTTTAAAGAWACAGCACCTAGATAATAAAGGCGCAGAAAGAGTACGCATTCTTTAAAGGCGCATATCTCAAAAACTACTGTAGTTAGCAAAGTTTTGTAAATTACAAAATTGCTCAACATAAGATTTTACACATTTTGCATTTTTTACAATTTTGATAGCTTTAACGGTTCGCGAGATATGCGCCATTAAAGCTGGCCGCGCCCCCCCCAACCATCTCCTCCCCATTTATTGCTCGCTAGCTTCATACCTCGAAAGCTACGGTAGCTAGTAGAATTTTGCAGCATGTGAATTATAGAAACTGTCATGTTCTTCCTGATTCAATTTATCGCATTTCGATGACTACAGTAGTTCATGAGGCTGCGTCTTTTCCAGTAAGATCTTCCCAGGAGCCAAGAGACTTTGAGATAATGAATCTCAACAGGTGACAGTCCAATTAGTACATAATTAGGCTTTTATGATGGATGGTGGTATTTGAGATGTCACAGACACTCTAGATAAGATGTAAGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTACTGTAGATCACTCCCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAGCTAGCGAGCAATAAATG</pcr_primer_p2>
		<pcr_amplicon_size>424</pcr_amplicon_size>
		<canonical_amplicon>CTACTGTAGATCACTCCCAAAAAATATCATATAGGATGGCGCCCCCAACTTTAAAGGCGCATAACTCAAAAACTACTGTAGCTAGCAAAGTTTTGAAAATTGTAAATTATAGTACATTTAATTTTCTTCAAAATACAGTTTTAAAATGTTTGCTAGCTACAGTAGTTCAGGAGATATGCGCCTTTAAAGAAACAGCACCTAGATAATAAAGGCGCAGAAAGAGTACGCATTCTTTAAAGGCGCATATCTCAAAAACTACTGTAGTTAGCAAAGTTTTGTAAATTACAAAATTGCTCAACATAAGATTTTACACATTTTGCATTTTTTACAATTTTGATAGCTTTAACGGTTCGCGAGATATGCGCCATTAAAGCTGGCCGCGCCCCCCCCAACCATCTCCTCCCCATTTATTGCTCGCTAGCTT</canonical_amplicon>
		<polymorphic_amplicon>CTACTGTAGATCACTCCCAAAAAATATCATATAGGATGGCGCCCCCAACTTTAAAGGCGCATAACTCAAAAACTACTGTAGCTAGCAAAGTTTTGAAAATTGTAAATTATAGTACATTTAATTTTCTTCAAAATACAGTTTTAAAATGTTTGCTAGCTACAGTAGTTCAGGAGATATGCGCCTTTAAAGAWACAGCACCTAGATAATAAAGGCGCAGAAAGAGTACGCATTCTTTAAAGGCGCATATCTCAAAAACTACTGTAGTTAGCAAAGTTTTGTAAATTACAAAATTGCTCAACATAAGATTTTACACATTTTGCATTTTTTACAATTTTGATAGCTTTAACGGTTCGCGAGATATGCGCCATTAAAGCTGGCCGCGCCCCCCCCAACCATCTCCTCCCCATTTATTGCTCGCTAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25180</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>911066</contig_pos>
        <strand></strand>
        <context>gggcccatgc[G/C]cctttaaagt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TGACCTACCCCCGAGAGTCAGGTGTTAGGACCCCTCATGGGGGCCCATGC</left_flank>
        <right_flank>CCTTTAAAGTCGGAAAATTCGAAATGGGAGGAGCCTAGTCGTGTTTAGGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAACCGTTCGCCCAGGACGATGAGCAATGTTTGGATAGGCACATTTCCGAGGGTGGCAAGAATATGAGGTACGGTATTTGGAAACTGTTAAAAGATTTAGATTTAGCGTGAAAAATCCTTTAAAATGATTATAAGCACGAATAGACTCCGCCCATTTTCAAATTTTGTCGAATTTTGACTTTAAAGGTGCATAGGGGGTTCGAATCTGAAAATTCCAGGAAAGTAGGTCATGATTATACTCATTTTAAAACTGAAACTCTAATAAATACAAAAATCGCACTTTTACACAGAAAACTTGATAAATAAAAAAGTTATTGGGAAAGCAAGATTTTGGAAATTTTTTTGAAATTTTTAGTTTTCCTTATAACTTTTTCAGATTTCAACATTTTCCGTTAAAACTTAATTTTTCGTGTTTTTCGCGTTGAGAGCTTCAAAATGAGTATAAACATGACCTACCCCCGAGAGTCAGGTGTTAGGACCCCTCATGGGGGCCCATGCGCCTTTAAAGTCGGAAAATTCGAAATGGGAGGAGCCTAGTCGTGTTTAGGCTCATTTCAAAGCATTTGTCACGAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGAAATTTTCAGCGTGGGCGAGCGACAACTGCTCTGCCTGTGCCGAGCGTTGCTCCGCGGAGCCCGAATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTG</canonical>
            <polymorphic>GAAACCGTTCGCCCAGGACGATGAGCAATGTTTGGATAGGCACATTTCCGAGGGTGGCAAGAATATGAGGTACGGTATTTGGAAACTGTTAAAAGATTTAGATTTAGCGTGAAAAATCCTTTAAAATGATTATAAGCACGAATAGACTCCGCCCATTTTCAAATTTTGTCGAATTTTGACTTTAAAGGTGCATAGGGGGTTCGAATCTGAAAATTCCAGGAAAGTAGGTCATGATTATACTCATTTTAAAACTGAAACTCTAATAAATACAAAAATCGCACTTTTACACAGAAAACTTGATAAATAAAAAAGTTATTGGGAAAGCAAGATTTTGGAAATTTTTTTGAAATTTTTAGTTTTCCTTATAACTTTTTCAGATTTCAACATTTTCCGTTAAAACTTAATTTTTCGTGTTTTTCGCGTTGAGAGCTTCAAAATGAGTATAAACATGACCTACCCCCGAGAGTCAGGTGTTAGGACCCCTCATGGGGGCCCATGCSCCTTTAAAGTCGGAAAATTCGAAATGGGAGGAGCCTAGTCGTGTTTAGGCTCATTTCAAAGCATTTGTCACGAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGAAATTTTCAGCGTGGGCGAGCGACAACTGCTCTGCCTGTGCCGAGCGTTGCTCCGCGGAGCCCGAATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 411 64 25</canonical_bands>
                <polymorphic_bands>911 64 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAATATGAGGTACGGTATTTG</pcr_primer_p1>
		<pcr_primer_p2>TCAGAATTCAGAGATTGTGTGTA</pcr_primer_p2>
		<pcr_amplicon_size>556</pcr_amplicon_size>
		<canonical_amplicon>AAGAATATGAGGTACGGTATTTGGAAACTGTTAAAAGATTTAGATTTAGCGTGAAAAATCCTTTAAAATGATTATAAGCACGAATAGACTCCGCCCATTTTCAAATTTTGTCGAATTTTGACTTTAAAGGTGCATAGGGGGTTCGAATCTGAAAATTCCAGGAAAGTAGGTCATGATTATACTCATTTTAAAACTGAAACTCTAATAAATACAAAAATCGCACTTTTACACAGAAAACTTGATAAATAAAAAAGTTATTGGGAAAGCAAGATTTTGGAAATTTTTTTGAAATTTTTAGTTTTCCTTATAACTTTTTCAGATTTCAACATTTTCCGTTAAAACTTAATTTTTCGTGTTTTTCGCGTTGAGAGCTTCAAAATGAGTATAAACATGACCTACCCCCGAGAGTCAGGTGTTAGGACCCCTCATGGGGGCCCATGCGCCTTTAAAGTCGGAAAATTCGAAATGGGAGGAGCCTAGTCGTGTTTAGGCTCATTTCAAAGCATTTGTCACGAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGA</canonical_amplicon>
		<polymorphic_amplicon>AAGAATATGAGGTACGGTATTTGGAAACTGTTAAAAGATTTAGATTTAGCGTGAAAAATCCTTTAAAATGATTATAAGCACGAATAGACTCCGCCCATTTTCAAATTTTGTCGAATTTTGACTTTAAAGGTGCATAGGGGGTTCGAATCTGAAAATTCCAGGAAAGTAGGTCATGATTATACTCATTTTAAAACTGAAACTCTAATAAATACAAAAATCGCACTTTTACACAGAAAACTTGATAAATAAAAAAGTTATTGGGAAAGCAAGATTTTGGAAATTTTTTTGAAATTTTTAGTTTTCCTTATAACTTTTTCAGATTTCAACATTTTCCGTTAAAACTTAATTTTTCGTGTTTTTCGCGTTGAGAGCTTCAAAATGAGTATAAACATGACCTACCCCCGAGAGTCAGGTGTTAGGACCCCTCATGGGGGCCCATGCSCCTTTAAAGTCGGAAAATTCGAAATGGGAGGAGCCTAGTCGTGTTTAGGCTCATTTCAAAGCATTTGTCACGAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25181</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>911087</contig_pos>
        <strand></strand>
        <context>cggaaaattc[G/A]aaatgggagg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTGTTAGGACCCCTCATGGGGGCCCATGCGCCTTTAAAGTCGGAAAATTC</left_flank>
        <right_flank>AAATGGGAGGAGCCTAGTCGTGTTTAGGCTCATTTCAAAGCATTTGTCAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGCAATGTTTGGATAGGCACATTTCCGAGGGTGGCAAGAATATGAGGTACGGTATTTGGAAACTGTTAAAAGATTTAGATTTAGCGTGAAAAATCCTTTAAAATGATTATAAGCACGAATAGACTCCGCCCATTTTCAAATTTTGTCGAATTTTGACTTTAAAGGTGCATAGGGGGTTCGAATCTGAAAATTCCAGGAAAGTAGGTCATGATTATACTCATTTTAAAACTGAAACTCTAATAAATACAAAAATCGCACTTTTACACAGAAAACTTGATAAATAAAAAAGTTATTGGGAAAGCAAGATTTTGGAAATTTTTTTGAAATTTTTAGTTTTCCTTATAACTTTTTCAGATTTCAACATTTTCCGTTAAAACTTAATTTTTCGTGTTTTTCGCGTTGAGAGCTTCAAAATGAGTATAAACATGACCTACCCCCGAGAGTCAGGTGTTAGGACCCCTCATGGGGGCCCATGCGCCTTTAAAGTCGGAAAATTCGAAATGGGAGGAGCCTAGTCGTGTTTAGGCTCATTTCAAAGCATTTGTCACGAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGAAATTTTCAGCGTGGGCGAGCGACAACTGCTCTGCCTGTGCCGAGCGTTGCTCCGCGGAGCCCGAATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTA</canonical>
            <polymorphic>TGAGCAATGTTTGGATAGGCACATTTCCGAGGGTGGCAAGAATATGAGGTACGGTATTTGGAAACTGTTAAAAGATTTAGATTTAGCGTGAAAAATCCTTTAAAATGATTATAAGCACGAATAGACTCCGCCCATTTTCAAATTTTGTCGAATTTTGACTTTAAAGGTGCATAGGGGGTTCGAATCTGAAAATTCCAGGAAAGTAGGTCATGATTATACTCATTTTAAAACTGAAACTCTAATAAATACAAAAATCGCACTTTTACACAGAAAACTTGATAAATAAAAAAGTTATTGGGAAAGCAAGATTTTGGAAATTTTTTTGAAATTTTTAGTTTTCCTTATAACTTTTTCAGATTTCAACATTTTCCGTTAAAACTTAATTTTTCGTGTTTTTCGCGTTGAGAGCTTCAAAATGAGTATAAACATGACCTACCCCCGAGAGTCAGGTGTTAGGACCCCTCATGGGGGCCCATGCGCCTTTAAAGTCGGAAAATTCRAAATGGGAGGAGCCTAGTCGTGTTTAGGCTCATTTCAAAGCATTTGTCACGAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGAAATTTTCAGCGTGGGCGAGCGACAACTGCTCTGCCTGTGCCGAGCGTTGCTCCGCGGAGCCCGAATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>353 318 180 149</canonical_bands>
                <polymorphic_bands>671 180 149</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>318 228 149 148 125 32</canonical_bands>
                <polymorphic_bands>546 149 148 125 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAATATGAGGTACGGTATTTG</pcr_primer_p1>
		<pcr_primer_p2>TCAGAATTCAGAGATTGTGTGTA</pcr_primer_p2>
		<pcr_amplicon_size>556</pcr_amplicon_size>
		<canonical_amplicon>AAGAATATGAGGTACGGTATTTGGAAACTGTTAAAAGATTTAGATTTAGCGTGAAAAATCCTTTAAAATGATTATAAGCACGAATAGACTCCGCCCATTTTCAAATTTTGTCGAATTTTGACTTTAAAGGTGCATAGGGGGTTCGAATCTGAAAATTCCAGGAAAGTAGGTCATGATTATACTCATTTTAAAACTGAAACTCTAATAAATACAAAAATCGCACTTTTACACAGAAAACTTGATAAATAAAAAAGTTATTGGGAAAGCAAGATTTTGGAAATTTTTTTGAAATTTTTAGTTTTCCTTATAACTTTTTCAGATTTCAACATTTTCCGTTAAAACTTAATTTTTCGTGTTTTTCGCGTTGAGAGCTTCAAAATGAGTATAAACATGACCTACCCCCGAGAGTCAGGTGTTAGGACCCCTCATGGGGGCCCATGCGCCTTTAAAGTCGGAAAATTCGAAATGGGAGGAGCCTAGTCGTGTTTAGGCTCATTTCAAAGCATTTGTCACGAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGA</canonical_amplicon>
		<polymorphic_amplicon>AAGAATATGAGGTACGGTATTTGGAAACTGTTAAAAGATTTAGATTTAGCGTGAAAAATCCTTTAAAATGATTATAAGCACGAATAGACTCCGCCCATTTTCAAATTTTGTCGAATTTTGACTTTAAAGGTGCATAGGGGGTTCGAATCTGAAAATTCCAGGAAAGTAGGTCATGATTATACTCATTTTAAAACTGAAACTCTAATAAATACAAAAATCGCACTTTTACACAGAAAACTTGATAAATAAAAAAGTTATTGGGAAAGCAAGATTTTGGAAATTTTTTTGAAATTTTTAGTTTTCCTTATAACTTTTTCAGATTTCAACATTTTCCGTTAAAACTTAATTTTTCGTGTTTTTCGCGTTGAGAGCTTCAAAATGAGTATAAACATGACCTACCCCCGAGAGTCAGGTGTTAGGACCCCTCATGGGGGCCCATGCGCCTTTAAAGTCGGAAAATTCRAAATGGGAGGAGCCTAGTCGTGTTTAGGCTCATTTCAAAGCATTTGTCACGAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25182</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>911115</contig_pos>
        <strand></strand>
        <context>tcgtgtttag[G/A]ctcatttyaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGCCTTTAAAGTCGGAAAATTCGAAATGGGAGGAGCCTAGTCGTGTTTAG</left_flank>
        <right_flank>CTCATTTCAAAGCATTTGTCACGAGGATTCCAAATTTCCTAGTACACACA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGGGTGGCAAGAATATGAGGTACGGTATTTGGAAACTGTTAAAAGATTTAGATTTAGCGTGAAAAATCCTTTAAAATGATTATAAGCACGAATAGACTCCGCCCATTTTCAAATTTTGTCGAATTTTGACTTTAAAGGTGCATAGGGGGTTCGAATCTGAAAATTCCAGGAAAGTAGGTCATGATTATACTCATTTTAAAACTGAAACTCTAATAAATACAAAAATCGCACTTTTACACAGAAAACTTGATAAATAAAAAAGTTATTGGGAAAGCAAGATTTTGGAAATTTTTTTGAAATTTTTAGTTTTCCTTATAACTTTTTCAGATTTCAACATTTTCCGTTAAAACTTAATTTTTCGTGTTTTTCGCGTTGAGAGCTTCAAAATGAGTATAAACATGACCTACCCCCGAGAGTCAGGTGTTAGGACCCCTCATGGGGGCCCATGCGCCTTTAAAGTCGGAAAATTCGAAATGGGAGGAGCCTAGTCGTGTTTAGGCTCATTTCAAAGCATTTGTCACGAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGAAATTTTCAGCGTGGGCGAGCGACAACTGCTCTGCCTGTGCCGAGCGTTGCTCCGCGGAGCCCGAATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAA</canonical>
            <polymorphic>GAGGGTGGCAAGAATATGAGGTACGGTATTTGGAAACTGTTAAAAGATTTAGATTTAGCGTGAAAAATCCTTTAAAATGATTATAAGCACGAATAGACTCCGCCCATTTTCAAATTTTGTCGAATTTTGACTTTAAAGGTGCATAGGGGGTTCGAATCTGAAAATTCCAGGAAAGTAGGTCATGATTATACTCATTTTAAAACTGAAACTCTAATAAATACAAAAATCGCACTTTTACACAGAAAACTTGATAAATAAAAAAGTTATTGGGAAAGCAAGATTTTGGAAATTTTTTTGAAATTTTTAGTTTTCCTTATAACTTTTTCAGATTTCAACATTTTCCGTTAAAACTTAATTTTTCGTGTTTTTCGCGTTGAGAGCTTCAAAATGAGTATAAACATGACCTACCCCCGAGAGTCAGGTGTTAGGACCCCTCATGGGGGCCCATGCGCCTTTAAAGTCGGAAAATTCGAAATGGGAGGAGCCTAGTCGTGTTTAGRCTCATTTCAAAGCATTTGTCACGAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGAAATTTTCAGCGTGGGCGAGCGACAACTGCTCTGCCTGTGCCGAGCGTTGCTCCGCGGAGCCCGAATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>380 222 124 63 43 41 39 30 28 16 14</canonical_bands>
                <polymorphic_bands>380 222 140 63 43 41 39 30 28 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAATATGAGGTACGGTATTTG</pcr_primer_p1>
		<pcr_primer_p2>TCAGAATTCAGAGATTGTGTGTA</pcr_primer_p2>
		<pcr_amplicon_size>556</pcr_amplicon_size>
		<canonical_amplicon>AAGAATATGAGGTACGGTATTTGGAAACTGTTAAAAGATTTAGATTTAGCGTGAAAAATCCTTTAAAATGATTATAAGCACGAATAGACTCCGCCCATTTTCAAATTTTGTCGAATTTTGACTTTAAAGGTGCATAGGGGGTTCGAATCTGAAAATTCCAGGAAAGTAGGTCATGATTATACTCATTTTAAAACTGAAACTCTAATAAATACAAAAATCGCACTTTTACACAGAAAACTTGATAAATAAAAAAGTTATTGGGAAAGCAAGATTTTGGAAATTTTTTTGAAATTTTTAGTTTTCCTTATAACTTTTTCAGATTTCAACATTTTCCGTTAAAACTTAATTTTTCGTGTTTTTCGCGTTGAGAGCTTCAAAATGAGTATAAACATGACCTACCCCCGAGAGTCAGGTGTTAGGACCCCTCATGGGGGCCCATGCGCCTTTAAAGTCGGAAAATTCGAAATGGGAGGAGCCTAGTCGTGTTTAGGCTCATTTCAAAGCATTTGTCACGAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGA</canonical_amplicon>
		<polymorphic_amplicon>AAGAATATGAGGTACGGTATTTGGAAACTGTTAAAAGATTTAGATTTAGCGTGAAAAATCCTTTAAAATGATTATAAGCACGAATAGACTCCGCCCATTTTCAAATTTTGTCGAATTTTGACTTTAAAGGTGCATAGGGGGTTCGAATCTGAAAATTCCAGGAAAGTAGGTCATGATTATACTCATTTTAAAACTGAAACTCTAATAAATACAAAAATCGCACTTTTACACAGAAAACTTGATAAATAAAAAAGTTATTGGGAAAGCAAGATTTTGGAAATTTTTTTGAAATTTTTAGTTTTCCTTATAACTTTTTCAGATTTCAACATTTTCCGTTAAAACTTAATTTTTCGTGTTTTTCGCGTTGAGAGCTTCAAAATGAGTATAAACATGACCTACCCCCGAGAGTCAGGTGTTAGGACCCCTCATGGGGGCCCATGCGCCTTTAAAGTCGGAAAATTCGAAATGGGAGGAGCCTAGTCGTGTTTAGRCTCATTTCAAAGCATTTGTCACGAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25183</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>911123</contig_pos>
        <strand></strand>
        <context>agrctcattt[C/T]aaagcatttg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGTCGGAAAATTCGAAATGGGAGGAGCCTAGTCGTGTTTAGGCTCATTT</left_flank>
        <right_flank>AAAGCATTTGTCACGAGGATTCCAAATTTCCTAGTACACACAATCTCTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGAATATGAGGTACGGTATTTGGAAACTGTTAAAAGATTTAGATTTAGCGTGAAAAATCCTTTAAAATGATTATAAGCACGAATAGACTCCGCCCATTTTCAAATTTTGTCGAATTTTGACTTTAAAGGTGCATAGGGGGTTCGAATCTGAAAATTCCAGGAAAGTAGGTCATGATTATACTCATTTTAAAACTGAAACTCTAATAAATACAAAAATCGCACTTTTACACAGAAAACTTGATAAATAAAAAAGTTATTGGGAAAGCAAGATTTTGGAAATTTTTTTGAAATTTTTAGTTTTCCTTATAACTTTTTCAGATTTCAACATTTTCCGTTAAAACTTAATTTTTCGTGTTTTTCGCGTTGAGAGCTTCAAAATGAGTATAAACATGACCTACCCCCGAGAGTCAGGTGTTAGGACCCCTCATGGGGGCCCATGCGCCTTTAAAGTCGGAAAATTCGAAATGGGAGGAGCCTAGTCGTGTTTAGGCTCATTTCAAAGCATTTGTCACGAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGAAATTTTCAGCGTGGGCGAGCGACAACTGCTCTGCCTGTGCCGAGCGTTGCTCCGCGGAGCCCGAATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAA</canonical>
            <polymorphic>CAAGAATATGAGGTACGGTATTTGGAAACTGTTAAAAGATTTAGATTTAGCGTGAAAAATCCTTTAAAATGATTATAAGCACGAATAGACTCCGCCCATTTTCAAATTTTGTCGAATTTTGACTTTAAAGGTGCATAGGGGGTTCGAATCTGAAAATTCCAGGAAAGTAGGTCATGATTATACTCATTTTAAAACTGAAACTCTAATAAATACAAAAATCGCACTTTTACACAGAAAACTTGATAAATAAAAAAGTTATTGGGAAAGCAAGATTTTGGAAATTTTTTTGAAATTTTTAGTTTTCCTTATAACTTTTTCAGATTTCAACATTTTCCGTTAAAACTTAATTTTTCGTGTTTTTCGCGTTGAGAGCTTCAAAATGAGTATAAACATGACCTACCCCCGAGAGTCAGGTGTTAGGACCCCTCATGGGGGCCCATGCGCCTTTAAAGTCGGAAAATTCGAAATGGGAGGAGCCTAGTCGTGTTTAGGCTCATTTYAAAGCATTTGTCACGAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGAAATTTTCAGCGTGGGCGAGCGACAACTGCTCTGCCTGTGCCGAGCGTTGCTCCGCGGAGCCCGAATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAATATGAGGTACGGTATTTG</pcr_primer_p1>
		<pcr_primer_p2>TCAGAATTCAGAGATTGTGTGTA</pcr_primer_p2>
		<pcr_amplicon_size>556</pcr_amplicon_size>
		<canonical_amplicon>AAGAATATGAGGTACGGTATTTGGAAACTGTTAAAAGATTTAGATTTAGCGTGAAAAATCCTTTAAAATGATTATAAGCACGAATAGACTCCGCCCATTTTCAAATTTTGTCGAATTTTGACTTTAAAGGTGCATAGGGGGTTCGAATCTGAAAATTCCAGGAAAGTAGGTCATGATTATACTCATTTTAAAACTGAAACTCTAATAAATACAAAAATCGCACTTTTACACAGAAAACTTGATAAATAAAAAAGTTATTGGGAAAGCAAGATTTTGGAAATTTTTTTGAAATTTTTAGTTTTCCTTATAACTTTTTCAGATTTCAACATTTTCCGTTAAAACTTAATTTTTCGTGTTTTTCGCGTTGAGAGCTTCAAAATGAGTATAAACATGACCTACCCCCGAGAGTCAGGTGTTAGGACCCCTCATGGGGGCCCATGCGCCTTTAAAGTCGGAAAATTCGAAATGGGAGGAGCCTAGTCGTGTTTAGGCTCATTTCAAAGCATTTGTCACGAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGA</canonical_amplicon>
		<polymorphic_amplicon>AAGAATATGAGGTACGGTATTTGGAAACTGTTAAAAGATTTAGATTTAGCGTGAAAAATCCTTTAAAATGATTATAAGCACGAATAGACTCCGCCCATTTTCAAATTTTGTCGAATTTTGACTTTAAAGGTGCATAGGGGGTTCGAATCTGAAAATTCCAGGAAAGTAGGTCATGATTATACTCATTTTAAAACTGAAACTCTAATAAATACAAAAATCGCACTTTTACACAGAAAACTTGATAAATAAAAAAGTTATTGGGAAAGCAAGATTTTGGAAATTTTTTTGAAATTTTTAGTTTTCCTTATAACTTTTTCAGATTTCAACATTTTCCGTTAAAACTTAATTTTTCGTGTTTTTCGCGTTGAGAGCTTCAAAATGAGTATAAACATGACCTACCCCCGAGAGTCAGGTGTTAGGACCCCTCATGGGGGCCCATGCGCCTTTAAAGTCGGAAAATTCGAAATGGGAGGAGCCTAGTCGTGTTTAGGCTCATTTYAAAGCATTTGTCACGAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25184</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>911138</contig_pos>
        <strand></strand>
        <context>catttgtcac[G/A]aggattccaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAATGGGAGGAGCCTAGTCGTGTTTAGGCTCATTTCAAAGCATTTGTCAC</left_flank>
        <right_flank>AGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGAAATTTTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGTATTTGGAAACTGTTAAAAGATTTAGATTTAGCGTGAAAAATCCTTTAAAATGATTATAAGCACGAATAGACTCCGCCCATTTTCAAATTTTGTCGAATTTTGACTTTAAAGGTGCATAGGGGGTTCGAATCTGAAAATTCCAGGAAAGTAGGTCATGATTATACTCATTTTAAAACTGAAACTCTAATAAATACAAAAATCGCACTTTTACACAGAAAACTTGATAAATAAAAAAGTTATTGGGAAAGCAAGATTTTGGAAATTTTTTTGAAATTTTTAGTTTTCCTTATAACTTTTTCAGATTTCAACATTTTCCGTTAAAACTTAATTTTTCGTGTTTTTCGCGTTGAGAGCTTCAAAATGAGTATAAACATGACCTACCCCCGAGAGTCAGGTGTTAGGACCCCTCATGGGGGCCCATGCGCCTTTAAAGTCGGAAAATTCGAAATGGGAGGAGCCTAGTCGTGTTTAGGCTCATTTCAAAGCATTTGTCACGAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGAAATTTTCAGCGTGGGCGAGCGACAACTGCTCTGCCTGTGCCGAGCGTTGCTCCGCGGAGCCCGAATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATT</canonical>
            <polymorphic>CGGTATTTGGAAACTGTTAAAAGATTTAGATTTAGCGTGAAAAATCCTTTAAAATGATTATAAGCACGAATAGACTCCGCCCATTTTCAAATTTTGTCGAATTTTGACTTTAAAGGTGCATAGGGGGTTCGAATCTGAAAATTCCAGGAAAGTAGGTCATGATTATACTCATTTTAAAACTGAAACTCTAATAAATACAAAAATCGCACTTTTACACAGAAAACTTGATAAATAAAAAAGTTATTGGGAAAGCAAGATTTTGGAAATTTTTTTGAAATTTTTAGTTTTCCTTATAACTTTTTCAGATTTCAACATTTTCCGTTAAAACTTAATTTTTCGTGTTTTTCGCGTTGAGAGCTTCAAAATGAGTATAAACATGACCTACCCCCGAGAGTCAGGTGTTAGGACCCCTCATGGGGGCCCATGCGCCTTTAAAGTCGGAAAATTCGAAATGGGAGGAGCCTAGTCGTGTTTAGGCTCATTTCAAAGCATTTGTCACRAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGAAATTTTCAGCGTGGGCGAGCGACAACTGCTCTGCCTGTGCCGAGCGTTGCTCCGCGGAGCCCGAATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>339 204 180 158 112 7</canonical_bands>
                <polymorphic_bands>451 204 180 158 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAATATGAGGTACGGTATTTG</pcr_primer_p1>
		<pcr_primer_p2>CGGTTACAGTATCCACAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>666</pcr_amplicon_size>
		<canonical_amplicon>CGAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGAAATTTTCAGCGTGGGCGAGCGACAACTGCTCTGCCTGTGCCGAGCGTTGCTCCGCGGAGCCCGAATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCG</canonical_amplicon>
		<polymorphic_amplicon>CRAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGAAATTTTCAGCGTGGGCGAGCGACAACTGCTCTGCCTGTGCCGAGCGTTGCTCCGCGGAGCCCGAATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25185</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>911419</contig_pos>
        <strand></strand>
        <context>caccacaaat[T/G]tttttatttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAAT</left_flank>
        <right_flank>TTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGTTTTCCTTATAACTTTTTCAGATTTCAACATTTTCCGTTAAAACTTAATTTTTCGTGTTTTTCGCGTTGAGAGCTTCAAAATGAGTATAAACATGACCTACCCCCGAGAGTCAGGTGTTAGGACCCCTCATGGGGGCCCATGCGCCTTTAAAGTCGGAAAATTCGAAATGGGAGGAGCCTAGTCGTGTTTAGGCTCATTTCAAAGCATTTGTCACGAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGAAATTTTCAGCGTGGGCGAGCGACAACTGCTCTGCCTGTGCCGAGCGTTGCTCCGCGGAGCCCGAATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATC</canonical>
            <polymorphic>TAGTTTTCCTTATAACTTTTTCAGATTTCAACATTTTCCGTTAAAACTTAATTTTTCGTGTTTTTCGCGTTGAGAGCTTCAAAATGAGTATAAACATGACCTACCCCCGAGAGTCAGGTGTTAGGACCCCTCATGGGGGCCCATGCGCCTTTAAAGTCGGAAAATTCGAAATGGGAGGAGCCTAGTCGTGTTTAGGCTCATTTCAAAGCATTTGTCACGAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGAAATTTTCAGCGTGGGCGAGCGACAACTGCTCTGCCTGTGCCGAGCGTTGCTCCGCGGAGCCCGAATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATKTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>235 162 96 93 88 70 66 45 40 35 28 25 9 8</canonical_bands>
                <polymorphic_bands>263 162 96 93 88 70 66 45 40 35 25 9 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>114 113 96 93 76 70 66 62 49 45 35 28 28 26 25 19 18 12 9 8 8</canonical_bands>
                <polymorphic_bands>114 113 104 96 93 70 66 62 49 45 35 28 26 25 19 18 12 9 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCGTAGACTCGGATAGGTAAG</pcr_primer_p1>
		<pcr_primer_p2>AGGACTACGATTCTGGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>646</pcr_amplicon_size>
		<canonical_amplicon>AATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTC</canonical_amplicon>
		<polymorphic_amplicon>AATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATKTTTTTATTTTCAATGTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25186</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>911434</contig_pos>
        <strand></strand>
        <context>tattttcaat[G/A]ttttygaaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAAT</left_flank>
        <right_flank>TTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTTCAGATTTCAACATTTTCCGTTAAAACTTAATTTTTCGTGTTTTTCGCGTTGAGAGCTTCAAAATGAGTATAAACATGACCTACCCCCGAGAGTCAGGTGTTAGGACCCCTCATGGGGGCCCATGCGCCTTTAAAGTCGGAAAATTCGAAATGGGAGGAGCCTAGTCGTGTTTAGGCTCATTTCAAAGCATTTGTCACGAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGAAATTTTCAGCGTGGGCGAGCGACAACTGCTCTGCCTGTGCCGAGCGTTGCTCCGCGGAGCCCGAATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAA</canonical>
            <polymorphic>CTTTTTCAGATTTCAACATTTTCCGTTAAAACTTAATTTTTCGTGTTTTTCGCGTTGAGAGCTTCAAAATGAGTATAAACATGACCTACCCCCGAGAGTCAGGTGTTAGGACCCCTCATGGGGGCCCATGCGCCTTTAAAGTCGGAAAATTCGAAATGGGAGGAGCCTAGTCGTGTTTAGGCTCATTTCAAAGCATTTGTCACGAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGAAATTTTCAGCGTGGGCGAGCGACAACTGCTCTGCCTGTGCCGAGCGTTGCTCCGCGGAGCCCGAATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATRTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTAGACTCGGATAGGTAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>AGGACTACGATTCTGGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>643</pcr_amplicon_size>
		<canonical_amplicon>CGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATRTTTTCGAAAAATTTTAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25187</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>911439</contig_pos>
        <strand></strand>
        <context>tcaatrtttt[C/T]gaaaaatttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTT</left_flank>
        <right_flank>GAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGATTTCAACATTTTCCGTTAAAACTTAATTTTTCGTGTTTTTCGCGTTGAGAGCTTCAAAATGAGTATAAACATGACCTACCCCCGAGAGTCAGGTGTTAGGACCCCTCATGGGGGCCCATGCGCCTTTAAAGTCGGAAAATTCGAAATGGGAGGAGCCTAGTCGTGTTTAGGCTCATTTCAAAGCATTTGTCACGAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGAAATTTTCAGCGTGGGCGAGCGACAACTGCTCTGCCTGTGCCGAGCGTTGCTCCGCGGAGCCCGAATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAAATTAA</canonical>
            <polymorphic>TCAGATTTCAACATTTTCCGTTAAAACTTAATTTTTCGTGTTTTTCGCGTTGAGAGCTTCAAAATGAGTATAAACATGACCTACCCCCGAGAGTCAGGTGTTAGGACCCCTCATGGGGGCCCATGCGCCTTTAAAGTCGGAAAATTCGAAATGGGAGGAGCCTAGTCGTGTTTAGGCTCATTTCAAAGCATTTGTCACGAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGAAATTTTCAGCGTGGGCGAGCGACAACTGCTCTGCCTGTGCCGAGCGTTGCTCCGCGGAGCCCGAATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTYGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAAATTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>491 353 146 10</canonical_bands>
                <polymorphic_bands>844 146 10</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>480 228 147 125 11 9</canonical_bands>
                <polymorphic_bands>605 228 147 11 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTAGACTCGGATAGGTAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>AGGACTACGATTCTGGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>643</pcr_amplicon_size>
		<canonical_amplicon>CGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCG</canonical_amplicon>
		<polymorphic_amplicon>CGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTYGAAAAATTTTAAAATTATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25188</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>911450</contig_pos>
        <strand></strand>
        <context>gaaaaatttt[A/T]aaattatcgt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTT</left_flank>
        <right_flank>AAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTTCCGTTAAAACTTAATTTTTCGTGTTTTTCGCGTTGAGAGCTTCAAAATGAGTATAAACATGACCTACCCCCGAGAGTCAGGTGTTAGGACCCCTCATGGGGGCCCATGCGCCTTTAAAGTCGGAAAATTCGAAATGGGAGGAGCCTAGTCGTGTTTAGGCTCATTTCAAAGCATTTGTCACGAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGAAATTTTCAGCGTGGGCGAGCGACAACTGCTCTGCCTGTGCCGAGCGTTGCTCCGCGGAGCCCGAATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAAATTAATGTTTCAAATC</canonical>
            <polymorphic>CATTTTCCGTTAAAACTTAATTTTTCGTGTTTTTCGCGTTGAGAGCTTCAAAATGAGTATAAACATGACCTACCCCCGAGAGTCAGGTGTTAGGACCCCTCATGGGGGCCCATGCGCCTTTAAAGTCGGAAAATTCGAAATGGGAGGAGCCTAGTCGTGTTTAGGCTCATTTCAAAGCATTTGTCACGAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGAAATTTTCAGCGTGGGCGAGCGACAACTGCTCTGCCTGTGCCGAGCGTTGCTCCGCGGAGCCCGAATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTWAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAAATTAATGTTTCAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>404 378 121 65 32</canonical_bands>
                <polymorphic_bands>410 404 121 65</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>378 132 103 95 91 73 65 32 14 10 7</canonical_bands>
                <polymorphic_bands>410 132 103 95 91 73 65 14 10 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTAGACTCGGATAGGTAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>AGGACTACGATTCTGGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>643</pcr_amplicon_size>
		<canonical_amplicon>CGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGG</canonical_amplicon>
		<polymorphic_amplicon>CGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTWAAATTATCGTGATTAGCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25189</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>911614</contig_pos>
        <strand></strand>
        <context>cttgccacaa[A/C]aaattcaaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAA</left_flank>
        <right_flank>AAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTT</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCATTTCAAAGCATTTGTCACGAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGAAATTTTCAGCGTGGGCGAGCGACAACTGCTCTGCCTGTGCCGAGCGTTGCTCCGCGGAGCCCGAATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAAATTAATGTTTCAAATCAAAATTCTCAGAAATAAACTTGTTATGTTGAAAAAAAGAGACACTTCCAGAATCGTAGTCCTTGATGCCGGACGGGTCGCCGAATTCGACACTCCCTCAAATTTGTTGCTCAATCCGGATTCGTTGTATTCTCAGCTATTAAATGAGAAAAATAGAAAACAGTG</canonical>
            <polymorphic>GCTCATTTCAAAGCATTTGTCACGAGGATTCCAAATTTCCTAGTACACACAATCTCTGAATTCTGAAATTTTCAGCGTGGGCGAGCGACAACTGCTCTGCCTGTGCCGAGCGTTGCTCCGCGGAGCCCGAATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAMAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAAATTAATGTTTCAAATCAAAATTCTCAGAAATAAACTTGTTATGTTGAAAAAAAGAGACACTTCCAGAATCGTAGTCCTTGATGCCGGACGGGTCGCCGAATTCGACACTCCCTCAAATTTGTTGCTCAATCCGGATTCGTTGTATTCTCAGCTATTAAATGAGAAAAATAGAAAACAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTAGACTCGGATAGGTAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>AGGACTACGATTCTGGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>643</pcr_amplicon_size>
		<canonical_amplicon>CGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAAATTAATGTTTCAAATCAAAATTCTCAGAAATAAACTTGTTATGTTGAAAAAAAGAGACACTTCCAGAATCGTAGTCCT</canonical_amplicon>
		<polymorphic_amplicon>CGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAMAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAAATTAATGTTTCAAATCAAAATTCTCAGAAATAAACTTGTTATGTTGAAAAAAAGAGACACTTCCAGAATCGTAGTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25190</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>911655</contig_pos>
        <strand></strand>
        <context>cttcaaaatt[T/C]gaaaaagtta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATT</left_flank>
        <right_flank>GAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTACACACAATCTCTGAATTCTGAAATTTTCAGCGTGGGCGAGCGACAACTGCTCTGCCTGTGCCGAGCGTTGCTCCGCGGAGCCCGAATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAAATTAATGTTTCAAATCAAAATTCTCAGAAATAAACTTGTTATGTTGAAAAAAAGAGACACTTCCAGAATCGTAGTCCTTGATGCCGGACGGGTCGCCGAATTCGACACTCCCTCAAATTTGTTGCTCAATCCGGATTCGTTGTATTCTCAGCTATTAAATGAGAAAAATAGAAAACAGTGATTTTTGATTCTTTTTTGTTTTGCCAGAGAAAATAAAAATA</canonical>
            <polymorphic>AGTACACACAATCTCTGAATTCTGAAATTTTCAGCGTGGGCGAGCGACAACTGCTCTGCCTGTGCCGAGCGTTGCTCCGCGGAGCCCGAATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTYGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAAATTAATGTTTCAAATCAAAATTCTCAGAAATAAACTTGTTATGTTGAAAAAAAGAGACACTTCCAGAATCGTAGTCCTTGATGCCGGACGGGTCGCCGAATTCGACACTCCCTCAAATTTGTTGCTCAATCCGGATTCGTTGTATTCTCAGCTATTAAATGAGAAAAATAGAAAACAGTGATTTTTGATTCTTTTTTGTTTTGCCAGAGAAAATAAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>235 106 102 93 88 80 70 45 40 35 28 27 17 17 9 8</canonical_bands>
                <polymorphic_bands>235 106 102 93 88 80 75 70 45 28 27 17 17 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTAGACTCGGATAGGTAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>AGGACTACGATTCTGGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>643</pcr_amplicon_size>
		<canonical_amplicon>CGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAAATTAATGTTTCAAATCAAAATTCTCAGAAATAAACTTGTTATGTTGAAAAAAAGAGACACTTCCAGAATCGTAGTCCT</canonical_amplicon>
		<polymorphic_amplicon>CGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTYGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAAATTAATGTTTCAAATCAAAATTCTCAGAAATAAACTTGTTATGTTGAAAAAAAGAGACACTTCCAGAATCGTAGTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25191</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>911724</contig_pos>
        <strand></strand>
        <context>cataatttct[T/A]tatttttcag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCT</left_flank>
        <right_flank>TATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATTAGCAAGTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTTGCTCCGCGGAGCCCGAATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAAATTAATGTTTCAAATCAAAATTCTCAGAAATAAACTTGTTATGTTGAAAAAAAGAGACACTTCCAGAATCGTAGTCCTTGATGCCGGACGGGTCGCCGAATTCGACACTCCCTCAAATTTGTTGCTCAATCCGGATTCGTTGTATTCTCAGCTATTAAATGAGAAAAATAGAAAACAGTGATTTTTGATTCTTTTTTGTTTTGCCAGAGAAAATAAAAATATCGAATTCTAATTAATTTTTTTTCAAAATTTTTTTTTCAAAATGCGTTTTCTTGTCTATTATATATTGT</canonical>
            <polymorphic>CGTTGCTCCGCGGAGCCCGAATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTWTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAAATTAATGTTTCAAATCAAAATTCTCAGAAATAAACTTGTTATGTTGAAAAAAAGAGACACTTCCAGAATCGTAGTCCTTGATGCCGGACGGGTCGCCGAATTCGACACTCCCTCAAATTTGTTGCTCAATCCGGATTCGTTGTATTCTCAGCTATTAAATGAGAAAAATAGAAAACAGTGATTTTTGATTCTTTTTTGTTTTGCCAGAGAAAATAAAAATATCGAATTCTAATTAATTTTTTTTCAAAATTTTTTTTTCAAAATGCGTTTTCTTGTCTATTATATATTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTAGACTCGGATAGGTAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>AGGACTACGATTCTGGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>643</pcr_amplicon_size>
		<canonical_amplicon>CGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAAATTAATGTTTCAAATCAAAATTCTCAGAAATAAACTTGTTATGTTGAAAAAAAGAGACACTTCCAGAATCGTAGTCCT</canonical_amplicon>
		<polymorphic_amplicon>CGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTWTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAAATTAATGTTTCAAATCAAAATTCTCAGAAATAAACTTGTTATGTTGAAAAAAAGAGACACTTCCAGAATCGTAGTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25192</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>911744</contig_pos>
        <strand></strand>
        <context>gaaattttga[A/G]aaatgttaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGA</left_flank>
        <right_flank>AAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTAT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAAATTAATGTTTCAAATCAAAATTCTCAGAAATAAACTTGTTATGTTGAAAAAAAGAGACACTTCCAGAATCGTAGTCCTTGATGCCGGACGGGTCGCCGAATTCGACACTCCCTCAAATTTGTTGCTCAATCCGGATTCGTTGTATTCTCAGCTATTAAATGAGAAAAATAGAAAACAGTGATTTTTGATTCTTTTTTGTTTTGCCAGAGAAAATAAAAATATCGAATTCTAATTAATTTTTTTTCAAAATTTTTTTTTCAAAATGCGTTTTCTTGTCTATTATATATTGTAAACAGGTCGAACTTTATAT</canonical>
            <polymorphic>ATCGTGATTCTGGACGAGGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGARAAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAAATTAATGTTTCAAATCAAAATTCTCAGAAATAAACTTGTTATGTTGAAAAAAAGAGACACTTCCAGAATCGTAGTCCTTGATGCCGGACGGGTCGCCGAATTCGACACTCCCTCAAATTTGTTGCTCAATCCGGATTCGTTGTATTCTCAGCTATTAAATGAGAAAAATAGAAAACAGTGATTTTTGATTCTTTTTTGTTTTGCCAGAGAAAATAAAAATATCGAATTCTAATTAATTTTTTTTCAAAATTTTTTTTTCAAAATGCGTTTTCTTGTCTATTATATATTGTAAACAGGTCGAACTTTATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTAGACTCGGATAGGTAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>AGGACTACGATTCTGGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>643</pcr_amplicon_size>
		<canonical_amplicon>CGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAAATTAATGTTTCAAATCAAAATTCTCAGAAATAAACTTGTTATGTTGAAAAAAAGAGACACTTCCAGAATCGTAGTCCT</canonical_amplicon>
		<polymorphic_amplicon>CGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGARAAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAAATTAATGTTTCAAATCAAAATTCTCAGAAATAAACTTGTTATGTTGAAAAAAAGAGACACTTCCAGAATCGTAGTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25193</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>911757</contig_pos>
        <strand></strand>
        <context>atgttaaaat[T/A]atcrtgatya</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAAT</left_flank>
        <right_flank>ATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGAGGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAAATTAATGTTTCAAATCAAAATTCTCAGAAATAAACTTGTTATGTTGAAAAAAAGAGACACTTCCAGAATCGTAGTCCTTGATGCCGGACGGGTCGCCGAATTCGACACTCCCTCAAATTTGTTGCTCAATCCGGATTCGTTGTATTCTCAGCTATTAAATGAGAAAAATAGAAAACAGTGATTTTTGATTCTTTTTTGTTTTGCCAGAGAAAATAAAAATATCGAATTCTAATTAATTTTTTTTCAAAATTTTTTTTTCAAAATGCGTTTTCTTGTCTATTATATATTGTAAACAGGTCGAACTTTATATCATTTTGCTCTAT</canonical>
            <polymorphic>ACGAGGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATWATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAAATTAATGTTTCAAATCAAAATTCTCAGAAATAAACTTGTTATGTTGAAAAAAAGAGACACTTCCAGAATCGTAGTCCTTGATGCCGGACGGGTCGCCGAATTCGACACTCCCTCAAATTTGTTGCTCAATCCGGATTCGTTGTATTCTCAGCTATTAAATGAGAAAAATAGAAAACAGTGATTTTTGATTCTTTTTTGTTTTGCCAGAGAAAATAAAAATATCGAATTCTAATTAATTTTTTTTCAAAATTTTTTTTTCAAAATGCGTTTTCTTGTCTATTATATATTGTAAACAGGTCGAACTTTATATCATTTTGCTCTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>109 102 93 80 76 76 70 62 45 37 35 28 28 26 19 19 18 17 13 12 9 8 8 6 4</canonical_bands>
                <polymorphic_bands>109 102 93 88 80 76 76 62 45 37 35 28 28 26 19 19 17 13 12 9 8 8 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTAGACTCGGATAGGTAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>AGGACTACGATTCTGGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>643</pcr_amplicon_size>
		<canonical_amplicon>CGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAAATTAATGTTTCAAATCAAAATTCTCAGAAATAAACTTGTTATGTTGAAAAAAAGAGACACTTCCAGAATCGTAGTCCT</canonical_amplicon>
		<polymorphic_amplicon>CGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATWATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAAATTAATGTTTCAAATCAAAATTCTCAGAAATAAACTTGTTATGTTGAAAAAAAGAGACACTTCCAGAATCGTAGTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25194</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>911761</contig_pos>
        <strand></strand>
        <context>taaaatwatc[A/G]tgatyagcaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATC</left_flank>
        <right_flank>TGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAAATTAATGTTTCAAATCAAAATTCTCAGAAATAAACTTGTTATGTTGAAAAAAAGAGACACTTCCAGAATCGTAGTCCTTGATGCCGGACGGGTCGCCGAATTCGACACTCCCTCAAATTTGTTGCTCAATCCGGATTCGTTGTATTCTCAGCTATTAAATGAGAAAAATAGAAAACAGTGATTTTTGATTCTTTTTTGTTTTGCCAGAGAAAATAAAAATATCGAATTCTAATTAATTTTTTTTCAAAATTTTTTTTTCAAAATGCGTTTTCTTGTCTATTATATATTGTAAACAGGTCGAACTTTATATCATTTTGCTCTATAGAA</canonical>
            <polymorphic>GGCGACGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCRTGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAAATTAATGTTTCAAATCAAAATTCTCAGAAATAAACTTGTTATGTTGAAAAAAAGAGACACTTCCAGAATCGTAGTCCTTGATGCCGGACGGGTCGCCGAATTCGACACTCCCTCAAATTTGTTGCTCAATCCGGATTCGTTGTATTCTCAGCTATTAAATGAGAAAAATAGAAAACAGTGATTTTTGATTCTTTTTTGTTTTGCCAGAGAAAATAAAAATATCGAATTCTAATTAATTTTTTTTCAAAATTTTTTTTTCAAAATGCGTTTTCTTGTCTATTATATATTGTAAACAGGTCGAACTTTATATCATTTTGCTCTATAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>463 264 235 38</canonical_bands>
                <polymorphic_bands>463 302 235</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTAGACTCGGATAGGTAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>AGGACTACGATTCTGGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>643</pcr_amplicon_size>
		<canonical_amplicon>CGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAAATTAATGTTTCAAATCAAAATTCTCAGAAATAAACTTGTTATGTTGAAAAAAAGAGACACTTCCAGAATCGTAGTCCT</canonical_amplicon>
		<polymorphic_amplicon>CGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCRTGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAAATTAATGTTTCAAATCAAAATTCTCAGAAATAAACTTGTTATGTTGAAAAAAAGAGACACTTCCAGAATCGTAGTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25195</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>911766</contig_pos>
        <strand></strand>
        <context>twatcrtgat[T/C]agcaagtttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGAT</left_flank>
        <right_flank>AGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAAATTAATGTTTCAAATCAAAATTCTCAGAAATAAACTTGTTATGTTGAAAAAAAGAGACACTTCCAGAATCGTAGTCCTTGATGCCGGACGGGTCGCCGAATTCGACACTCCCTCAAATTTGTTGCTCAATCCGGATTCGTTGTATTCTCAGCTATTAAATGAGAAAAATAGAAAACAGTGATTTTTGATTCTTTTTTGTTTTGCCAGAGAAAATAAAAATATCGAATTCTAATTAATTTTTTTTCAAAATTTTTTTTTCAAAATGCGTTTTCTTGTCTATTATATATTGTAAACAGGTCGAACTTTATATCATTTTGCTCTATAGAATCTGA</canonical>
            <polymorphic>CGGCTTCTGTGGATACTGTAACCGATGGAATTGTTCAAAGAGCCATTCGACAACACTTTCCCAAATCCACGACAATTTCCATTGCTCATCGTTTGGACACAATCGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATYAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAAATTAATGTTTCAAATCAAAATTCTCAGAAATAAACTTGTTATGTTGAAAAAAAGAGACACTTCCAGAATCGTAGTCCTTGATGCCGGACGGGTCGCCGAATTCGACACTCCCTCAAATTTGTTGCTCAATCCGGATTCGTTGTATTCTCAGCTATTAAATGAGAAAAATAGAAAACAGTGATTTTTGATTCTTTTTTGTTTTGCCAGAGAAAATAAAAATATCGAATTCTAATTAATTTTTTTTCAAAATTTTTTTTTCAAAATGCGTTTTCTTGTCTATTATATATTGTAAACAGGTCGAACTTTATATCATTTTGCTCTATAGAATCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTAGACTCGGATAGGTAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>AGGACTACGATTCTGGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>643</pcr_amplicon_size>
		<canonical_amplicon>CGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATTAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAAATTAATGTTTCAAATCAAAATTCTCAGAAATAAACTTGTTATGTTGAAAAAAAGAGACACTTCCAGAATCGTAGTCCT</canonical_amplicon>
		<polymorphic_amplicon>CGTAGACTCGGATAGGTAAGTTTGCAAAAATCTTGTTTTCACCACAAATTTTTTTATTTTCAATGTTTTCGAAAAATTTTAAAATTATCGTGATTAGCAGGTTTTGCGCTTTAAAATGAGTATAAACATGTCATACTTTCCTCAAATTTCAAAAATTCGGGCCCCCTATGCGCCTTTAAAGTCACAAAATCAAAGTGGGAGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTCTTGCCACAAAAAATTCAAAAATCAACATTTCATTCAAAAACTTCAAAATTTGAAAAAGTTATGATGAAAACTTTAATTTTCACAAAAATTTCCAATATCTTGTTTTCCCCATAATTTCTTTATTTTTCAGAAATTTTGAAAAATGTTAAAATTATCATGATYAGCAAGTTTTGCGCTTCAAAAAGAGTATAAACATGACCTACTTTGCTCAACTTTCAAAATTCGGACCCTCTATGCGCCTTAAAGTCAAAAAACCGGATTTTTTCAAAATGGGCGGAGCCTAGCCGTGATTATACTCATTTTGAAGCTCTCATCGAGCTGAATTCGAAAATTAATGTTTCAAATCAAAATTCTCAGAAATAAACTTGTTATGTTGAAAAAAAGAGACACTTCCAGAATCGTAGTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25197</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>966119</contig_pos>
        <strand></strand>
        <context>tcgaaatgtt[T/G]taatatctaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTT</left_flank>
        <right_flank>TAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACACGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTAGAATGTTTTAGGAACGTCTGAAATTGCTCTAAAAAAGAAGCAAAAAAGTTTGCCACCGAGAGGAATCGAACCCGGGTCGTTAGATTGGTAGTGGAATCTTCGAAAATCCCACTGAGCCATACGGGCATTTTTTTGAAAAATCGCATAAAAACACTGGAAAAACGGCATTTTTCGAGGTGGAAACTATTATCGTCATTTTTCTCAAGTTTTTTTGGTTTAAAAGTTTTATTTTCAATCAAATTTTGAAAATTTTTTTTCAAAAATTATGATTTTTTCAAAATTGCTTTCATTTTTCTTCAGTTTTCCATCAGCTGTTTGTTTCAAGTGTTAAAAGTTTTTGTTTCAATACCCCTTTTTTCAGATTCCTATTCAAAATGGATCACATCAAAAAGACACAAATGCCCCATTCAAAATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTTTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACACGGCTAGGCTTCGCCTTGTTTAGTTTTTTGACAATTTTTGACTTTAAAGGCGCAGAGGGGGTCCGAATTTTGAAATTAGAGGAAAGTAGGTCATGTTTATACTCATTTCGTAGCTTAAAACGTGAGAAATTCAATAATTTTAATTTCAGTCCGAAATAATGAAAATACAGAAAGTTATGAGGAAAACTAAAAATTTCAGAAAAATTTCGAAAGCTTTGTTTTCCCCATAACTTTCTTATTTCACAAGATTTTCGAATAAAAATTGATTTTCTATTATTTCACATTAAATGCTTCAAAATGAGTATAATCATGACCCACTTCCCTCGAATTTCTAAATTCCGACCCCCCATGCGCCTTTAAAGTCCAAAAATCAAAGTGGGCGGAGCCTAATCGTGTTTATACTCATTTTGAAGCTCTCAGTGTGAAAAGTTGATTAAAATTAGTTGCAGTCAA</canonical>
            <polymorphic>TCTAGAATGTTTTAGGAACGTCTGAAATTGCTCTAAAAAAGAAGCAAAAAAGTTTGCCACCGAGAGGAATCGAACCCGGGTCGTTAGATTGGTAGTGGAATCTTCGAAAATCCCACTGAGCCATACGGGCATTTTTTTGAAAAATCGCATAAAAACACTGGAAAAACGGCATTTTTCGAGGTGGAAACTATTATCGTCATTTTTCTCAAGTTTTTTTGGTTTAAAAGTTTTATTTTCAATCAAATTTTGAAAATTTTTTTTCAAAAATTATGATTTTTTCAAAATTGCTTTCATTTTTCTTCAGTTTTCCATCAGCTGTTTGTTTCAAGTGTTAAAAGTTTTTGTTTCAATACCCCTTTTTTCAGATTCCTATTCAAAATGGATCACATCAAAAAGACACAAATGCCCCATTCAAAATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTKTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACACGGCTAGGCTTCGCCTTGTTTAGTTTTTTGACAATTTTTGACTTTAAAGGCGCAGAGGGGGTCCGAATTTTGAAATTAGAGGAAAGTAGGTCATGTTTATACTCATTTCGTAGCTTAAAACGTGAGAAATTCAATAATTTTAATTTCAGTCCGAAATAATGAAAATACAGAAAGTTATGAGGAAAACTAAAAATTTCAGAAAAATTTCGAAAGCTTTGTTTTCCCCATAACTTTCTTATTTCACAAGATTTTCGAATAAAAATTGATTTTCTATTATTTCACATTAAATGCTTCAAAATGAGTATAATCATGACCCACTTCCCTCGAATTTCTAAATTCCGACCCCCCATGCGCCTTTAAAGTCCAAAAATCAAAGTGGGCGGAGCCTAATCGTGTTTATACTCATTTTGAAGCTCTCAGTGTGAAAAGTTGATTAAAATTAGTTGCAGTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>221 168 144 111 91 77 73 71 25 19</canonical_bands>
                <polymorphic_bands>259 221 144 111 77 73 71 25 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCAAAAGAGCCAGGTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGGCGAAATCTGAAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>641</pcr_amplicon_size>
		<canonical_amplicon>AATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTTTAATATCTAAATTCAGGAC</canonical_amplicon>
		<polymorphic_amplicon>AATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTKTAATATCTAAATTCAGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25198</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>966167</contig_pos>
        <strand></strand>
        <context>agtataaaca[C/T]grctaggctt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACA</left_flank>
        <right_flank>GGCTAGGCTTCGCCTTGTTTAGTTTTTTGACAATTTTTGACTTTAAAGGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGTTTGCCACCGAGAGGAATCGAACCCGGGTCGTTAGATTGGTAGTGGAATCTTCGAAAATCCCACTGAGCCATACGGGCATTTTTTTGAAAAATCGCATAAAAACACTGGAAAAACGGCATTTTTCGAGGTGGAAACTATTATCGTCATTTTTCTCAAGTTTTTTTGGTTTAAAAGTTTTATTTTCAATCAAATTTTGAAAATTTTTTTTCAAAAATTATGATTTTTTCAAAATTGCTTTCATTTTTCTTCAGTTTTCCATCAGCTGTTTGTTTCAAGTGTTAAAAGTTTTTGTTTCAATACCCCTTTTTTCAGATTCCTATTCAAAATGGATCACATCAAAAAGACACAAATGCCCCATTCAAAATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTTTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACACGGCTAGGCTTCGCCTTGTTTAGTTTTTTGACAATTTTTGACTTTAAAGGCGCAGAGGGGGTCCGAATTTTGAAATTAGAGGAAAGTAGGTCATGTTTATACTCATTTCGTAGCTTAAAACGTGAGAAATTCAATAATTTTAATTTCAGTCCGAAATAATGAAAATACAGAAAGTTATGAGGAAAACTAAAAATTTCAGAAAAATTTCGAAAGCTTTGTTTTCCCCATAACTTTCTTATTTCACAAGATTTTCGAATAAAAATTGATTTTCTATTATTTCACATTAAATGCTTCAAAATGAGTATAATCATGACCCACTTCCCTCGAATTTCTAAATTCCGACCCCCCATGCGCCTTTAAAGTCCAAAAATCAAAGTGGGCGGAGCCTAATCGTGTTTATACTCATTTTGAAGCTCTCAGTGTGAAAAGTTGATTAAAATTAGTTGCAGTCAAAAATATAGAAAATTGACAAAGTTATGACTGCAAACGTAATTTTTCAGA</canonical>
            <polymorphic>AAAGTTTGCCACCGAGAGGAATCGAACCCGGGTCGTTAGATTGGTAGTGGAATCTTCGAAAATCCCACTGAGCCATACGGGCATTTTTTTGAAAAATCGCATAAAAACACTGGAAAAACGGCATTTTTCGAGGTGGAAACTATTATCGTCATTTTTCTCAAGTTTTTTTGGTTTAAAAGTTTTATTTTCAATCAAATTTTGAAAATTTTTTTTCAAAAATTATGATTTTTTCAAAATTGCTTTCATTTTTCTTCAGTTTTCCATCAGCTGTTTGTTTCAAGTGTTAAAAGTTTTTGTTTCAATACCCCTTTTTTCAGATTCCTATTCAAAATGGATCACATCAAAAAGACACAAATGCCCCATTCAAAATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTTTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACAYGGCTAGGCTTCGCCTTGTTTAGTTTTTTGACAATTTTTGACTTTAAAGGCGCAGAGGGGGTCCGAATTTTGAAATTAGAGGAAAGTAGGTCATGTTTATACTCATTTCGTAGCTTAAAACGTGAGAAATTCAATAATTTTAATTTCAGTCCGAAATAATGAAAATACAGAAAGTTATGAGGAAAACTAAAAATTTCAGAAAAATTTCGAAAGCTTTGTTTTCCCCATAACTTTCTTATTTCACAAGATTTTCGAATAAAAATTGATTTTCTATTATTTCACATTAAATGCTTCAAAATGAGTATAATCATGACCCACTTCCCTCGAATTTCTAAATTCCGACCCCCCATGCGCCTTTAAAGTCCAAAAATCAAAGTGGGCGGAGCCTAATCGTGTTTATACTCATTTTGAAGCTCTCAGTGTGAAAAGTTGATTAAAATTAGTTGCAGTCAAAAATATAGAAAATTGACAAAGTTATGACTGCAAACGTAATTTTTCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>148 148 124 119 77 61 55 42 38 38 36 27 26 18 17 13 11 2</canonical_bands>
                <polymorphic_bands>272 148 119 77 61 55 42 38 38 36 27 26 18 17 13 11 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCAAAAGAGCCAGGTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGGCGAAATCTGAAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>641</pcr_amplicon_size>
		<canonical_amplicon>AATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTTTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACACGGCTAGGCTTCGCCTTGTT</canonical_amplicon>
		<polymorphic_amplicon>AATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTTTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACAYGGCTAGGCTTCGCCTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25199</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>966169</contig_pos>
        <strand></strand>
        <context>tataaacayg[G/A]ctaggcttcg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACACG</left_flank>
        <right_flank>CTAGGCTTCGCCTTGTTTAGTTTTTTGACAATTTTTGACTTTAAAGGCGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTTGCCACCGAGAGGAATCGAACCCGGGTCGTTAGATTGGTAGTGGAATCTTCGAAAATCCCACTGAGCCATACGGGCATTTTTTTGAAAAATCGCATAAAAACACTGGAAAAACGGCATTTTTCGAGGTGGAAACTATTATCGTCATTTTTCTCAAGTTTTTTTGGTTTAAAAGTTTTATTTTCAATCAAATTTTGAAAATTTTTTTTCAAAAATTATGATTTTTTCAAAATTGCTTTCATTTTTCTTCAGTTTTCCATCAGCTGTTTGTTTCAAGTGTTAAAAGTTTTTGTTTCAATACCCCTTTTTTCAGATTCCTATTCAAAATGGATCACATCAAAAAGACACAAATGCCCCATTCAAAATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTTTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACACGGCTAGGCTTCGCCTTGTTTAGTTTTTTGACAATTTTTGACTTTAAAGGCGCAGAGGGGGTCCGAATTTTGAAATTAGAGGAAAGTAGGTCATGTTTATACTCATTTCGTAGCTTAAAACGTGAGAAATTCAATAATTTTAATTTCAGTCCGAAATAATGAAAATACAGAAAGTTATGAGGAAAACTAAAAATTTCAGAAAAATTTCGAAAGCTTTGTTTTCCCCATAACTTTCTTATTTCACAAGATTTTCGAATAAAAATTGATTTTCTATTATTTCACATTAAATGCTTCAAAATGAGTATAATCATGACCCACTTCCCTCGAATTTCTAAATTCCGACCCCCCATGCGCCTTTAAAGTCCAAAAATCAAAGTGGGCGGAGCCTAATCGTGTTTATACTCATTTTGAAGCTCTCAGTGTGAAAAGTTGATTAAAATTAGTTGCAGTCAAAAATATAGAAAATTGACAAAGTTATGACTGCAAACGTAATTTTTCAGATT</canonical>
            <polymorphic>AGTTTGCCACCGAGAGGAATCGAACCCGGGTCGTTAGATTGGTAGTGGAATCTTCGAAAATCCCACTGAGCCATACGGGCATTTTTTTGAAAAATCGCATAAAAACACTGGAAAAACGGCATTTTTCGAGGTGGAAACTATTATCGTCATTTTTCTCAAGTTTTTTTGGTTTAAAAGTTTTATTTTCAATCAAATTTTGAAAATTTTTTTTCAAAAATTATGATTTTTTCAAAATTGCTTTCATTTTTCTTCAGTTTTCCATCAGCTGTTTGTTTCAAGTGTTAAAAGTTTTTGTTTCAATACCCCTTTTTTCAGATTCCTATTCAAAATGGATCACATCAAAAAGACACAAATGCCCCATTCAAAATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTTTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACACGRCTAGGCTTCGCCTTGTTTAGTTTTTTGACAATTTTTGACTTTAAAGGCGCAGAGGGGGTCCGAATTTTGAAATTAGAGGAAAGTAGGTCATGTTTATACTCATTTCGTAGCTTAAAACGTGAGAAATTCAATAATTTTAATTTCAGTCCGAAATAATGAAAATACAGAAAGTTATGAGGAAAACTAAAAATTTCAGAAAAATTTCGAAAGCTTTGTTTTCCCCATAACTTTCTTATTTCACAAGATTTTCGAATAAAAATTGATTTTCTATTATTTCACATTAAATGCTTCAAAATGAGTATAATCATGACCCACTTCCCTCGAATTTCTAAATTCCGACCCCCCATGCGCCTTTAAAGTCCAAAAATCAAAGTGGGCGGAGCCTAATCGTGTTTATACTCATTTTGAAGCTCTCAGTGTGAAAAGTTGATTAAAATTAGTTGCAGTCAAAAATATAGAAAATTGACAAAGTTATGACTGCAAACGTAATTTTTCAGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>195 172 111 105 101 100 90 70 28 23 5</canonical_bands>
                <polymorphic_bands>195 172 111 105 101 100 90 70 28 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCAAAAGAGCCAGGTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGGCGAAATCTGAAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>641</pcr_amplicon_size>
		<canonical_amplicon>AATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTTTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACACGGCTAGGCTTCGCCTTGTTTA</canonical_amplicon>
		<polymorphic_amplicon>AATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTTTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACACGRCTAGGCTTCGCCTTGTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25200</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>966305</contig_pos>
        <strand></strand>
        <context>attcaataat[T/A]yyaatttcag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GGTCATGTTTATACTCATTTCGTAGCTTAAAACGTGAGAAATTCAATAAT</left_flank>
        <right_flank>TTAATTTCAGTCCGAAATAATGAAAATACAGAAAGTTATGAGGAAAACTA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTATTATCGTCATTTTTCTCAAGTTTTTTTGGTTTAAAAGTTTTATTTTCAATCAAATTTTGAAAATTTTTTTTCAAAAATTATGATTTTTTCAAAATTGCTTTCATTTTTCTTCAGTTTTCCATCAGCTGTTTGTTTCAAGTGTTAAAAGTTTTTGTTTCAATACCCCTTTTTTCAGATTCCTATTCAAAATGGATCACATCAAAAAGACACAAATGCCCCATTCAAAATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTTTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACACGGCTAGGCTTCGCCTTGTTTAGTTTTTTGACAATTTTTGACTTTAAAGGCGCAGAGGGGGTCCGAATTTTGAAATTAGAGGAAAGTAGGTCATGTTTATACTCATTTCGTAGCTTAAAACGTGAGAAATTCAATAATTTTAATTTCAGTCCGAAATAATGAAAATACAGAAAGTTATGAGGAAAACTAAAAATTTCAGAAAAATTTCGAAAGCTTTGTTTTCCCCATAACTTTCTTATTTCACAAGATTTTCGAATAAAAATTGATTTTCTATTATTTCACATTAAATGCTTCAAAATGAGTATAATCATGACCCACTTCCCTCGAATTTCTAAATTCCGACCCCCCATGCGCCTTTAAAGTCCAAAAATCAAAGTGGGCGGAGCCTAATCGTGTTTATACTCATTTTGAAGCTCTCAGTGTGAAAAGTTGATTAAAATTAGTTGCAGTCAAAAATATAGAAAATTGACAAAGTTATGACTGCAAACGTAATTTTTCAGATTTCGCCAAATCTGTATTTCAATCGATTTGCGAGGAAATCAATCAAATCATCAAGGAATCCGAGAAAATAGAAAATGTCTTTAAGACTCCGCCCATTTCTGACCACGCCCCCTTTTTGGATGCCTTGATTTCCTACAT</canonical>
            <polymorphic>ACTATTATCGTCATTTTTCTCAAGTTTTTTTGGTTTAAAAGTTTTATTTTCAATCAAATTTTGAAAATTTTTTTTCAAAAATTATGATTTTTTCAAAATTGCTTTCATTTTTCTTCAGTTTTCCATCAGCTGTTTGTTTCAAGTGTTAAAAGTTTTTGTTTCAATACCCCTTTTTTCAGATTCCTATTCAAAATGGATCACATCAAAAAGACACAAATGCCCCATTCAAAATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTTTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACACGGCTAGGCTTCGCCTTGTTTAGTTTTTTGACAATTTTTGACTTTAAAGGCGCAGAGGGGGTCCGAATTTTGAAATTAGAGGAAAGTAGGTCATGTTTATACTCATTTCGTAGCTTAAAACGTGAGAAATTCAATAATWTTAATTTCAGTCCGAAATAATGAAAATACAGAAAGTTATGAGGAAAACTAAAAATTTCAGAAAAATTTCGAAAGCTTTGTTTTCCCCATAACTTTCTTATTTCACAAGATTTTCGAATAAAAATTGATTTTCTATTATTTCACATTAAATGCTTCAAAATGAGTATAATCATGACCCACTTCCCTCGAATTTCTAAATTCCGACCCCCCATGCGCCTTTAAAGTCCAAAAATCAAAGTGGGCGGAGCCTAATCGTGTTTATACTCATTTTGAAGCTCTCAGTGTGAAAAGTTGATTAAAATTAGTTGCAGTCAAAAATATAGAAAATTGACAAAGTTATGACTGCAAACGTAATTTTTCAGATTTCGCCAAATCTGTATTTCAATCGATTTGCGAGGAAATCAATCAAATCATCAAGGAATCCGAGAAAATAGAAAATGTCTTTAAGACTCCGCCCATTTCTGACCACGCCCCCTTTTTGGATGCCTTGATTTCCTACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>152 149 103 70 66 60 58 56 54 50 33 27 26 17 15 14 11 9 8 8 8 6</canonical_bands>
                <polymorphic_bands>152 149 103 70 66 60 58 56 54 50 33 27 26 17 15 14 14 11 9 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCAAAAGAGCCAGGTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGGCGAAATCTGAAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>641</pcr_amplicon_size>
		<canonical_amplicon>AATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTTTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACACGGCTAGGCTTCGCCTTGTTTAGTTTTTTGACAATTTTTGACTTTAAAGGCGCAGAGGGGGTCCGAATTTTGAAATTAGAGGAAAGTAGGTCATGTTTATACTCATTTCGTAGCTTAAAACGTGAGAAATTCAATAATTTTAATTTCAGTCCGAAATAATGAAAATACAGAAAGTTATGAGGAAAACTAAAAATTTCAGAAAAATTTCGAAAGCTTTGTTTTCCCCATAACTTTCTTATTTCACAAGATTTTCGAATAAAAATTGATTTTCTATTATTTCACATTAAATGCTTCAAAATGAGTATAATCATGACCCACTTCCCTCGAATTTCTAAATTCCGACCCCCCATGCGCCTTTAAAGTCCAAAAATCAAAGTGGGCGGAGCCTAATCGTGTTTATACTCATTTTGAAGCTCTCAGTGTGAAAAGTTGATTAAAATTAGTTGCAGTCAAAAATATAGAAAATTGACAAAGTTATGACTGCAAACGTAATTTTTCAGATTTCGCCA</canonical_amplicon>
		<polymorphic_amplicon>AATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTTTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACACGGCTAGGCTTCGCCTTGTTTAGTTTTTTGACAATTTTTGACTTTAAAGGCGCAGAGGGGGTCCGAATTTTGAAATTAGAGGAAAGTAGGTCATGTTTATACTCATTTCGTAGCTTAAAACGTGAGAAATTCAATAATWTTAATTTCAGTCCGAAATAATGAAAATACAGAAAGTTATGAGGAAAACTAAAAATTTCAGAAAAATTTCGAAAGCTTTGTTTTCCCCATAACTTTCTTATTTCACAAGATTTTCGAATAAAAATTGATTTTCTATTATTTCACATTAAATGCTTCAAAATGAGTATAATCATGACCCACTTCCCTCGAATTTCTAAATTCCGACCCCCCATGCGCCTTTAAAGTCCAAAAATCAAAGTGGGCGGAGCCTAATCGTGTTTATACTCATTTTGAAGCTCTCAGTGTGAAAAGTTGATTAAAATTAGTTGCAGTCAAAAATATAGAAAATTGACAAAGTTATGACTGCAAACGTAATTTTTCAGATTTCGCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25201</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>966306</contig_pos>
        <strand></strand>
        <context>ttcaataatw[T/C]yaatttcagt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTCATGTTTATACTCATTTCGTAGCTTAAAACGTGAGAAATTCAATAATT</left_flank>
        <right_flank>TAATTTCAGTCCGAAATAATGAAAATACAGAAAGTTATGAGGAAAACTAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATTATCGTCATTTTTCTCAAGTTTTTTTGGTTTAAAAGTTTTATTTTCAATCAAATTTTGAAAATTTTTTTTCAAAAATTATGATTTTTTCAAAATTGCTTTCATTTTTCTTCAGTTTTCCATCAGCTGTTTGTTTCAAGTGTTAAAAGTTTTTGTTTCAATACCCCTTTTTTCAGATTCCTATTCAAAATGGATCACATCAAAAAGACACAAATGCCCCATTCAAAATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTTTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACACGGCTAGGCTTCGCCTTGTTTAGTTTTTTGACAATTTTTGACTTTAAAGGCGCAGAGGGGGTCCGAATTTTGAAATTAGAGGAAAGTAGGTCATGTTTATACTCATTTCGTAGCTTAAAACGTGAGAAATTCAATAATTTTAATTTCAGTCCGAAATAATGAAAATACAGAAAGTTATGAGGAAAACTAAAAATTTCAGAAAAATTTCGAAAGCTTTGTTTTCCCCATAACTTTCTTATTTCACAAGATTTTCGAATAAAAATTGATTTTCTATTATTTCACATTAAATGCTTCAAAATGAGTATAATCATGACCCACTTCCCTCGAATTTCTAAATTCCGACCCCCCATGCGCCTTTAAAGTCCAAAAATCAAAGTGGGCGGAGCCTAATCGTGTTTATACTCATTTTGAAGCTCTCAGTGTGAAAAGTTGATTAAAATTAGTTGCAGTCAAAAATATAGAAAATTGACAAAGTTATGACTGCAAACGTAATTTTTCAGATTTCGCCAAATCTGTATTTCAATCGATTTGCGAGGAAATCAATCAAATCATCAAGGAATCCGAGAAAATAGAAAATGTCTTTAAGACTCCGCCCATTTCTGACCACGCCCCCTTTTTGGATGCCTTGATTTCCTACATA</canonical>
            <polymorphic>CTATTATCGTCATTTTTCTCAAGTTTTTTTGGTTTAAAAGTTTTATTTTCAATCAAATTTTGAAAATTTTTTTTCAAAAATTATGATTTTTTCAAAATTGCTTTCATTTTTCTTCAGTTTTCCATCAGCTGTTTGTTTCAAGTGTTAAAAGTTTTTGTTTCAATACCCCTTTTTTCAGATTCCTATTCAAAATGGATCACATCAAAAAGACACAAATGCCCCATTCAAAATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTTTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACACGGCTAGGCTTCGCCTTGTTTAGTTTTTTGACAATTTTTGACTTTAAAGGCGCAGAGGGGGTCCGAATTTTGAAATTAGAGGAAAGTAGGTCATGTTTATACTCATTTCGTAGCTTAAAACGTGAGAAATTCAATAATTYTAATTTCAGTCCGAAATAATGAAAATACAGAAAGTTATGAGGAAAACTAAAAATTTCAGAAAAATTTCGAAAGCTTTGTTTTCCCCATAACTTTCTTATTTCACAAGATTTTCGAATAAAAATTGATTTTCTATTATTTCACATTAAATGCTTCAAAATGAGTATAATCATGACCCACTTCCCTCGAATTTCTAAATTCCGACCCCCCATGCGCCTTTAAAGTCCAAAAATCAAAGTGGGCGGAGCCTAATCGTGTTTATACTCATTTTGAAGCTCTCAGTGTGAAAAGTTGATTAAAATTAGTTGCAGTCAAAAATATAGAAAATTGACAAAGTTATGACTGCAAACGTAATTTTTCAGATTTCGCCAAATCTGTATTTCAATCGATTTGCGAGGAAATCAATCAAATCATCAAGGAATCCGAGAAAATAGAAAATGTCTTTAAGACTCCGCCCATTTCTGACCACGCCCCCTTTTTGGATGCCTTGATTTCCTACATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>168 148 144 111 91 77 73 71 58 34 25</canonical_bands>
                <polymorphic_bands>169 168 148 111 91 77 73 71 58 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCAAAAGAGCCAGGTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGGCGAAATCTGAAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>641</pcr_amplicon_size>
		<canonical_amplicon>AATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTTTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACACGGCTAGGCTTCGCCTTGTTTAGTTTTTTGACAATTTTTGACTTTAAAGGCGCAGAGGGGGTCCGAATTTTGAAATTAGAGGAAAGTAGGTCATGTTTATACTCATTTCGTAGCTTAAAACGTGAGAAATTCAATAATTTTAATTTCAGTCCGAAATAATGAAAATACAGAAAGTTATGAGGAAAACTAAAAATTTCAGAAAAATTTCGAAAGCTTTGTTTTCCCCATAACTTTCTTATTTCACAAGATTTTCGAATAAAAATTGATTTTCTATTATTTCACATTAAATGCTTCAAAATGAGTATAATCATGACCCACTTCCCTCGAATTTCTAAATTCCGACCCCCCATGCGCCTTTAAAGTCCAAAAATCAAAGTGGGCGGAGCCTAATCGTGTTTATACTCATTTTGAAGCTCTCAGTGTGAAAAGTTGATTAAAATTAGTTGCAGTCAAAAATATAGAAAATTGACAAAGTTATGACTGCAAACGTAATTTTTCAGATTTCGCCA</canonical_amplicon>
		<polymorphic_amplicon>AATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTTTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACACGGCTAGGCTTCGCCTTGTTTAGTTTTTTGACAATTTTTGACTTTAAAGGCGCAGAGGGGGTCCGAATTTTGAAATTAGAGGAAAGTAGGTCATGTTTATACTCATTTCGTAGCTTAAAACGTGAGAAATTCAATAATTYTAATTTCAGTCCGAAATAATGAAAATACAGAAAGTTATGAGGAAAACTAAAAATTTCAGAAAAATTTCGAAAGCTTTGTTTTCCCCATAACTTTCTTATTTCACAAGATTTTCGAATAAAAATTGATTTTCTATTATTTCACATTAAATGCTTCAAAATGAGTATAATCATGACCCACTTCCCTCGAATTTCTAAATTCCGACCCCCCATGCGCCTTTAAAGTCCAAAAATCAAAGTGGGCGGAGCCTAATCGTGTTTATACTCATTTTGAAGCTCTCAGTGTGAAAAGTTGATTAAAATTAGTTGCAGTCAAAAATATAGAAAATTGACAAAGTTATGACTGCAAACGTAATTTTTCAGATTTCGCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25202</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>966307</contig_pos>
        <strand></strand>
        <context>tcaataatwy[T/C]aatttcagtc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCATGTTTATACTCATTTCGTAGCTTAAAACGTGAGAAATTCAATAATTT</left_flank>
        <right_flank>AATTTCAGTCCGAAATAATGAAAATACAGAAAGTTATGAGGAAAACTAAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTATCGTCATTTTTCTCAAGTTTTTTTGGTTTAAAAGTTTTATTTTCAATCAAATTTTGAAAATTTTTTTTCAAAAATTATGATTTTTTCAAAATTGCTTTCATTTTTCTTCAGTTTTCCATCAGCTGTTTGTTTCAAGTGTTAAAAGTTTTTGTTTCAATACCCCTTTTTTCAGATTCCTATTCAAAATGGATCACATCAAAAAGACACAAATGCCCCATTCAAAATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTTTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACACGGCTAGGCTTCGCCTTGTTTAGTTTTTTGACAATTTTTGACTTTAAAGGCGCAGAGGGGGTCCGAATTTTGAAATTAGAGGAAAGTAGGTCATGTTTATACTCATTTCGTAGCTTAAAACGTGAGAAATTCAATAATTTTAATTTCAGTCCGAAATAATGAAAATACAGAAAGTTATGAGGAAAACTAAAAATTTCAGAAAAATTTCGAAAGCTTTGTTTTCCCCATAACTTTCTTATTTCACAAGATTTTCGAATAAAAATTGATTTTCTATTATTTCACATTAAATGCTTCAAAATGAGTATAATCATGACCCACTTCCCTCGAATTTCTAAATTCCGACCCCCCATGCGCCTTTAAAGTCCAAAAATCAAAGTGGGCGGAGCCTAATCGTGTTTATACTCATTTTGAAGCTCTCAGTGTGAAAAGTTGATTAAAATTAGTTGCAGTCAAAAATATAGAAAATTGACAAAGTTATGACTGCAAACGTAATTTTTCAGATTTCGCCAAATCTGTATTTCAATCGATTTGCGAGGAAATCAATCAAATCATCAAGGAATCCGAGAAAATAGAAAATGTCTTTAAGACTCCGCCCATTTCTGACCACGCCCCCTTTTTGGATGCCTTGATTTCCTACATAA</canonical>
            <polymorphic>TATTATCGTCATTTTTCTCAAGTTTTTTTGGTTTAAAAGTTTTATTTTCAATCAAATTTTGAAAATTTTTTTTCAAAAATTATGATTTTTTCAAAATTGCTTTCATTTTTCTTCAGTTTTCCATCAGCTGTTTGTTTCAAGTGTTAAAAGTTTTTGTTTCAATACCCCTTTTTTCAGATTCCTATTCAAAATGGATCACATCAAAAAGACACAAATGCCCCATTCAAAATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTTTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACACGGCTAGGCTTCGCCTTGTTTAGTTTTTTGACAATTTTTGACTTTAAAGGCGCAGAGGGGGTCCGAATTTTGAAATTAGAGGAAAGTAGGTCATGTTTATACTCATTTCGTAGCTTAAAACGTGAGAAATTCAATAATTTYAATTTCAGTCCGAAATAATGAAAATACAGAAAGTTATGAGGAAAACTAAAAATTTCAGAAAAATTTCGAAAGCTTTGTTTTCCCCATAACTTTCTTATTTCACAAGATTTTCGAATAAAAATTGATTTTCTATTATTTCACATTAAATGCTTCAAAATGAGTATAATCATGACCCACTTCCCTCGAATTTCTAAATTCCGACCCCCCATGCGCCTTTAAAGTCCAAAAATCAAAGTGGGCGGAGCCTAATCGTGTTTATACTCATTTTGAAGCTCTCAGTGTGAAAAGTTGATTAAAATTAGTTGCAGTCAAAAATATAGAAAATTGACAAAGTTATGACTGCAAACGTAATTTTTCAGATTTCGCCAAATCTGTATTTCAATCGATTTGCGAGGAAATCAATCAAATCATCAAGGAATCCGAGAAAATAGAAAATGTCTTTAAGACTCCGCCCATTTCTGACCACGCCCCCTTTTTGGATGCCTTGATTTCCTACATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>168 148 144 111 91 77 73 71 59 33 25</canonical_bands>
                <polymorphic_bands>169 168 148 111 91 77 73 71 59 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCAAAAGAGCCAGGTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGGCGAAATCTGAAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>641</pcr_amplicon_size>
		<canonical_amplicon>AATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTTTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACACGGCTAGGCTTCGCCTTGTTTAGTTTTTTGACAATTTTTGACTTTAAAGGCGCAGAGGGGGTCCGAATTTTGAAATTAGAGGAAAGTAGGTCATGTTTATACTCATTTCGTAGCTTAAAACGTGAGAAATTCAATAATTTTAATTTCAGTCCGAAATAATGAAAATACAGAAAGTTATGAGGAAAACTAAAAATTTCAGAAAAATTTCGAAAGCTTTGTTTTCCCCATAACTTTCTTATTTCACAAGATTTTCGAATAAAAATTGATTTTCTATTATTTCACATTAAATGCTTCAAAATGAGTATAATCATGACCCACTTCCCTCGAATTTCTAAATTCCGACCCCCCATGCGCCTTTAAAGTCCAAAAATCAAAGTGGGCGGAGCCTAATCGTGTTTATACTCATTTTGAAGCTCTCAGTGTGAAAAGTTGATTAAAATTAGTTGCAGTCAAAAATATAGAAAATTGACAAAGTTATGACTGCAAACGTAATTTTTCAGATTTCGCCA</canonical_amplicon>
		<polymorphic_amplicon>AATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTTTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACACGGCTAGGCTTCGCCTTGTTTAGTTTTTTGACAATTTTTGACTTTAAAGGCGCAGAGGGGGTCCGAATTTTGAAATTAGAGGAAAGTAGGTCATGTTTATACTCATTTCGTAGCTTAAAACGTGAGAAATTCAATAATTTYAATTTCAGTCCGAAATAATGAAAATACAGAAAGTTATGAGGAAAACTAAAAATTTCAGAAAAATTTCGAAAGCTTTGTTTTCCCCATAACTTTCTTATTTCACAAGATTTTCGAATAAAAATTGATTTTCTATTATTTCACATTAAATGCTTCAAAATGAGTATAATCATGACCCACTTCCCTCGAATTTCTAAATTCCGACCCCCCATGCGCCTTTAAAGTCCAAAAATCAAAGTGGGCGGAGCCTAATCGTGTTTATACTCATTTTGAAGCTCTCAGTGTGAAAAGTTGATTAAAATTAGTTGCAGTCAAAAATATAGAAAATTGACAAAGTTATGACTGCAAACGTAATTTTTCAGATTTCGCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25203</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>966333</contig_pos>
        <strand></strand>
        <context>taatgaaaat[A/G]cagaaagtta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAACGTGAGAAATTCAATAATTTTAATTTCAGTCCGAAATAATGAAAAT</left_flank>
        <right_flank>CAGAAAGTTATGAGGAAAACTAAAAATTTCAGAAAAATTTCGAAAGCTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGTTTAAAAGTTTTATTTTCAATCAAATTTTGAAAATTTTTTTTCAAAAATTATGATTTTTTCAAAATTGCTTTCATTTTTCTTCAGTTTTCCATCAGCTGTTTGTTTCAAGTGTTAAAAGTTTTTGTTTCAATACCCCTTTTTTCAGATTCCTATTCAAAATGGATCACATCAAAAAGACACAAATGCCCCATTCAAAATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTTTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACACGGCTAGGCTTCGCCTTGTTTAGTTTTTTGACAATTTTTGACTTTAAAGGCGCAGAGGGGGTCCGAATTTTGAAATTAGAGGAAAGTAGGTCATGTTTATACTCATTTCGTAGCTTAAAACGTGAGAAATTCAATAATTTTAATTTCAGTCCGAAATAATGAAAATACAGAAAGTTATGAGGAAAACTAAAAATTTCAGAAAAATTTCGAAAGCTTTGTTTTCCCCATAACTTTCTTATTTCACAAGATTTTCGAATAAAAATTGATTTTCTATTATTTCACATTAAATGCTTCAAAATGAGTATAATCATGACCCACTTCCCTCGAATTTCTAAATTCCGACCCCCCATGCGCCTTTAAAGTCCAAAAATCAAAGTGGGCGGAGCCTAATCGTGTTTATACTCATTTTGAAGCTCTCAGTGTGAAAAGTTGATTAAAATTAGTTGCAGTCAAAAATATAGAAAATTGACAAAGTTATGACTGCAAACGTAATTTTTCAGATTTCGCCAAATCTGTATTTCAATCGATTTGCGAGGAAATCAATCAAATCATCAAGGAATCCGAGAAAATAGAAAATGTCTTTAAGACTCCGCCCATTTCTGACCACGCCCCCTTTTTGGATGCCTTGATTTCCTACATAAAATTGGCTGGAAAATTCGAGAACGCG</canonical>
            <polymorphic>TTTGGTTTAAAAGTTTTATTTTCAATCAAATTTTGAAAATTTTTTTTCAAAAATTATGATTTTTTCAAAATTGCTTTCATTTTTCTTCAGTTTTCCATCAGCTGTTTGTTTCAAGTGTTAAAAGTTTTTGTTTCAATACCCCTTTTTTCAGATTCCTATTCAAAATGGATCACATCAAAAAGACACAAATGCCCCATTCAAAATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTTTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACACGGCTAGGCTTCGCCTTGTTTAGTTTTTTGACAATTTTTGACTTTAAAGGCGCAGAGGGGGTCCGAATTTTGAAATTAGAGGAAAGTAGGTCATGTTTATACTCATTTCGTAGCTTAAAACGTGAGAAATTCAATAATTTTAATTTCAGTCCGAAATAATGAAAATRCAGAAAGTTATGAGGAAAACTAAAAATTTCAGAAAAATTTCGAAAGCTTTGTTTTCCCCATAACTTTCTTATTTCACAAGATTTTCGAATAAAAATTGATTTTCTATTATTTCACATTAAATGCTTCAAAATGAGTATAATCATGACCCACTTCCCTCGAATTTCTAAATTCCGACCCCCCATGCGCCTTTAAAGTCCAAAAATCAAAGTGGGCGGAGCCTAATCGTGTTTATACTCATTTTGAAGCTCTCAGTGTGAAAAGTTGATTAAAATTAGTTGCAGTCAAAAATATAGAAAATTGACAAAGTTATGACTGCAAACGTAATTTTTCAGATTTCGCCAAATCTGTATTTCAATCGATTTGCGAGGAAATCAATCAAATCATCAAGGAATCCGAGAAAATAGAAAATGTCTTTAAGACTCCGCCCATTTCTGACCACGCCCCCTTTTTGGATGCCTTGATTTCCTACATAAAATTGGCTGGAAAATTCGAGAACGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCAAAAGAGCCAGGTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGGCGAAATCTGAAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>641</pcr_amplicon_size>
		<canonical_amplicon>AATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTTTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACACGGCTAGGCTTCGCCTTGTTTAGTTTTTTGACAATTTTTGACTTTAAAGGCGCAGAGGGGGTCCGAATTTTGAAATTAGAGGAAAGTAGGTCATGTTTATACTCATTTCGTAGCTTAAAACGTGAGAAATTCAATAATTTTAATTTCAGTCCGAAATAATGAAAATACAGAAAGTTATGAGGAAAACTAAAAATTTCAGAAAAATTTCGAAAGCTTTGTTTTCCCCATAACTTTCTTATTTCACAAGATTTTCGAATAAAAATTGATTTTCTATTATTTCACATTAAATGCTTCAAAATGAGTATAATCATGACCCACTTCCCTCGAATTTCTAAATTCCGACCCCCCATGCGCCTTTAAAGTCCAAAAATCAAAGTGGGCGGAGCCTAATCGTGTTTATACTCATTTTGAAGCTCTCAGTGTGAAAAGTTGATTAAAATTAGTTGCAGTCAAAAATATAGAAAATTGACAAAGTTATGACTGCAAACGTAATTTTTCAGATTTCGCCA</canonical_amplicon>
		<polymorphic_amplicon>AATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTTTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACACGGCTAGGCTTCGCCTTGTTTAGTTTTTTGACAATTTTTGACTTTAAAGGCGCAGAGGGGGTCCGAATTTTGAAATTAGAGGAAAGTAGGTCATGTTTATACTCATTTCGTAGCTTAAAACGTGAGAAATTCAATAATTTTAATTTCAGTCCGAAATAATGAAAATRCAGAAAGTTATGAGGAAAACTAAAAATTTCAGAAAAATTTCGAAAGCTTTGTTTTCCCCATAACTTTCTTATTTCACAAGATTTTCGAATAAAAATTGATTTTCTATTATTTCACATTAAATGCTTCAAAATGAGTATAATCATGACCCACTTCCCTCGAATTTCTAAATTCCGACCCCCCATGCGCCTTTAAAGTCCAAAAATCAAAGTGGGCGGAGCCTAATCGTGTTTATACTCATTTTGAAGCTCTCAGTGTGAAAAGTTGATTAAAATTAGTTGCAGTCAAAAATATAGAAAATTGACAAAGTTATGACTGCAAACGTAATTTTTCAGATTTCGCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25204</snp_id>
        <super_contig>c001001095.Contig1</super_contig>
        <contig_pos>966357</contig_pos>
        <strand></strand>
        <context>ggaaaactaa[A/G]aatttcagaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATTTCAGTCCGAAATAATGAAAATACAGAAAGTTATGAGGAAAACTAA</left_flank>
        <right_flank>AATTTCAGAAAAATTTCGAAAGCTTTGTTTTCCCCATAACTTTCTTATTT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAAATTTTGAAAATTTTTTTTCAAAAATTATGATTTTTTCAAAATTGCTTTCATTTTTCTTCAGTTTTCCATCAGCTGTTTGTTTCAAGTGTTAAAAGTTTTTGTTTCAATACCCCTTTTTTCAGATTCCTATTCAAAATGGATCACATCAAAAAGACACAAATGCCCCATTCAAAATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTTTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACACGGCTAGGCTTCGCCTTGTTTAGTTTTTTGACAATTTTTGACTTTAAAGGCGCAGAGGGGGTCCGAATTTTGAAATTAGAGGAAAGTAGGTCATGTTTATACTCATTTCGTAGCTTAAAACGTGAGAAATTCAATAATTTTAATTTCAGTCCGAAATAATGAAAATACAGAAAGTTATGAGGAAAACTAAAAATTTCAGAAAAATTTCGAAAGCTTTGTTTTCCCCATAACTTTCTTATTTCACAAGATTTTCGAATAAAAATTGATTTTCTATTATTTCACATTAAATGCTTCAAAATGAGTATAATCATGACCCACTTCCCTCGAATTTCTAAATTCCGACCCCCCATGCGCCTTTAAAGTCCAAAAATCAAAGTGGGCGGAGCCTAATCGTGTTTATACTCATTTTGAAGCTCTCAGTGTGAAAAGTTGATTAAAATTAGTTGCAGTCAAAAATATAGAAAATTGACAAAGTTATGACTGCAAACGTAATTTTTCAGATTTCGCCAAATCTGTATTTCAATCGATTTGCGAGGAAATCAATCAAATCATCAAGGAATCCGAGAAAATAGAAAATGTCTTTAAGACTCCGCCCATTTCTGACCACGCCCCCTTTTTGGATGCCTTGATTTCCTACATAAAATTGGCTGGAAAATTCGAGAACGCGTTGGAGAAAATTGGAATGTTGGAG</canonical>
            <polymorphic>ATCAAATTTTGAAAATTTTTTTTCAAAAATTATGATTTTTTCAAAATTGCTTTCATTTTTCTTCAGTTTTCCATCAGCTGTTTGTTTCAAGTGTTAAAAGTTTTTGTTTCAATACCCCTTTTTTCAGATTCCTATTCAAAATGGATCACATCAAAAAGACACAAATGCCCCATTCAAAATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTTTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACACGGCTAGGCTTCGCCTTGTTTAGTTTTTTGACAATTTTTGACTTTAAAGGCGCAGAGGGGGTCCGAATTTTGAAATTAGAGGAAAGTAGGTCATGTTTATACTCATTTCGTAGCTTAAAACGTGAGAAATTCAATAATTTTAATTTCAGTCCGAAATAATGAAAATACAGAAAGTTATGAGGAAAACTAARAATTTCAGAAAAATTTCGAAAGCTTTGTTTTCCCCATAACTTTCTTATTTCACAAGATTTTCGAATAAAAATTGATTTTCTATTATTTCACATTAAATGCTTCAAAATGAGTATAATCATGACCCACTTCCCTCGAATTTCTAAATTCCGACCCCCCATGCGCCTTTAAAGTCCAAAAATCAAAGTGGGCGGAGCCTAATCGTGTTTATACTCATTTTGAAGCTCTCAGTGTGAAAAGTTGATTAAAATTAGTTGCAGTCAAAAATATAGAAAATTGACAAAGTTATGACTGCAAACGTAATTTTTCAGATTTCGCCAAATCTGTATTTCAATCGATTTGCGAGGAAATCAATCAAATCATCAAGGAATCCGAGAAAATAGAAAATGTCTTTAAGACTCCGCCCATTTCTGACCACGCCCCCTTTTTGGATGCCTTGATTTCCTACATAAAATTGGCTGGAAAATTCGAGAACGCGTTGGAGAAAATTGGAATGTTGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>319 183 124 103 64 62 60 38 15 11 9 8 4</canonical_bands>
                <polymorphic_bands>319 183 124 103 75 62 60 38 15 9 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCAAAAGAGCCAGGTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGGCGAAATCTGAAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>641</pcr_amplicon_size>
		<canonical_amplicon>AATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTTTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACACGGCTAGGCTTCGCCTTGTTTAGTTTTTTGACAATTTTTGACTTTAAAGGCGCAGAGGGGGTCCGAATTTTGAAATTAGAGGAAAGTAGGTCATGTTTATACTCATTTCGTAGCTTAAAACGTGAGAAATTCAATAATTTTAATTTCAGTCCGAAATAATGAAAATACAGAAAGTTATGAGGAAAACTAAAAATTTCAGAAAAATTTCGAAAGCTTTGTTTTCCCCATAACTTTCTTATTTCACAAGATTTTCGAATAAAAATTGATTTTCTATTATTTCACATTAAATGCTTCAAAATGAGTATAATCATGACCCACTTCCCTCGAATTTCTAAATTCCGACCCCCCATGCGCCTTTAAAGTCCAAAAATCAAAGTGGGCGGAGCCTAATCGTGTTTATACTCATTTTGAAGCTCTCAGTGTGAAAAGTTGATTAAAATTAGTTGCAGTCAAAAATATAGAAAATTGACAAAGTTATGACTGCAAACGTAATTTTTCAGATTTCGCCA</canonical_amplicon>
		<polymorphic_amplicon>AATCAAAAGAGCCAGGTAAAATTTTGTTTTTCAAAATTCAAAAACAGTATAACTTTTGTATTTCATGAGCAATCTCGAAATGTTTTAATATCTAAATTCAGGACGTCTAAAGCTTCAAAATGAGTATAAACACGGCTAGGCTTCGCCTTGTTTAGTTTTTTGACAATTTTTGACTTTAAAGGCGCAGAGGGGGTCCGAATTTTGAAATTAGAGGAAAGTAGGTCATGTTTATACTCATTTCGTAGCTTAAAACGTGAGAAATTCAATAATTTTAATTTCAGTCCGAAATAATGAAAATACAGAAAGTTATGAGGAAAACTAARAATTTCAGAAAAATTTCGAAAGCTTTGTTTTCCCCATAACTTTCTTATTTCACAAGATTTTCGAATAAAAATTGATTTTCTATTATTTCACATTAAATGCTTCAAAATGAGTATAATCATGACCCACTTCCCTCGAATTTCTAAATTCCGACCCCCCATGCGCCTTTAAAGTCCAAAAATCAAAGTGGGCGGAGCCTAATCGTGTTTATACTCATTTTGAAGCTCTCAGTGTGAAAAGTTGATTAAAATTAGTTGCAGTCAAAAATATAGAAAATTGACAAAGTTATGACTGCAAACGTAATTTTTCAGATTTCGCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25205</snp_id>
        <super_contig>c001001125.Contig1</super_contig>
        <contig_pos>19168</contig_pos>
        <strand>+</strand>
        <context>TTGTTAGGGG[A/T]TTTTTTTTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGAAAATTTCGCAGTTCAAAAACTTCCATTTTGAAGACCTTGTTAGGGG</left_flank>
        <right_flank>TTTTTTTTAAATTTTGAAATTATGAGTCAAATTCTGAAAATAAAACGGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATAAAACTACTAGGCCATTCAAATATTCACCACCAGTCGGTTTGCGCCCCTTCGGGGCTGAACCTTCTGGCCTCCGGTTACAGTACCCGTTATCTTAAAAAAAAACGTTTCTCCACTTTTATTCAGGGCATAAAAATAGGAAATTATGAAATTCGGTGTAATAGGAATTAGAAATTTTATGATGCCATATTTCCTCTAATGGAAGCTCATGGACTTCTATTTTTCAACTTCTTTCTCAGGGTGAACTTCTATTAGAAGGTCGGCTTCTATTTTTCAACAATTTATTTTCAAAAAAAAAATCAGAAATTTGACAATTCGGAAGCTAAGAATTCTGAAATTCAATGTTTTGAAAAATTCGACATTTCATTCTGCAATTGTAAATTTCAAAATTCTGACGGTTTCTACATATTAGAGGAAATACAGTTATCGAAATTTTCAGAACTTTAGTTGAAAATTTCGCAGTTCAAAAACTTCCATTTTGAAGACCTTGTTAGGGGTTTTTTTTTAAATTTTGAAATTATGAGTCAAATTCTGAAAATAAAACGGCGAATACAAAAGTCGGTTTACACTTTACAGTGGCTGAGCCTCTTTTATTTAAAATCTCGGAACTCTAAATTTTGAAAACTCAGTAAGTCAGGAATACGGAAATCCAGGAATTTATAAACTGAAATTTCGGAAAGTTTTATATTTGAAAGTTCCGAAAAATGCGAATTCGGAAGTTCTTCTCCGATTTTGAACCTCCGGTGAGAATTTCAATATTTCCTGTTTCTCAGTTTTCGAACAGCTGAAATCTTTTATTTTCGAACTCAGAATCTCAAAAATTCATATTTTCTAGGAAGTGTAACGCTAGCAGAGATTTTCGGATTCCGGATTTCGTGATTTTTTTCATTGCGGATTCCGAGAAAAAATTTTAATCCGGATTAAAAAAATATTTGTTAACTTGCAAGAATTCGCTGTCTTTTCTGAACTTCCGCGACTAAAAAGGCAAAAATATAGTT</canonical>
            <polymorphic>TAATAAAACTACTAGGCCATTCAAATATTCACCACCAGTCGGTTTGCGCCCCTTCGGGGCTGAACCTTCTGGCCTCCGGTTACAGTACCCGTTATCTTAAAAAAAAACGTTTCTCCACTTTTATTCAGGGCATAAAAATAGGAAATTATGAAATTCGGTGTAATAGGAATTAGAAATTTTATGATGCCATATTTCCTCTAATGGAAGCTCATGGACTTCTATTTTTCAACTTCTTTCTCAGGGTGAACTTCTATTAGAAGGTCGGCTTCTATTTTTCAACAATTTATTTTCAAAAAAAAAATCAGAAATTTGACAATTCGGAAGCTAAGAATTCTGAAATTCAATGTTTTGAAAAATTCGACATTTCATTCTGCAATTGTAAATTTCAAAATTCTGACGGTTTCTACATATTAGAGGAAATACAGTTATCGAAATTTTCAGAACTTTAGTTGAAAATTTCGCAGTTCAAAAACTTCCATTTTGAAGACCTTGTTAGGGGWTTTTTTTTAAATTTTGAAATTATGAGTCAAATTCTGAAAATAAAACGGCGAATACAAAAGTCGGTTTACACTTTACAGTGGCTGAGCCTCTTTTATTTAAAATCTCGGAACTCTAAATTTTGAAAACTCAGTAAGTCAGGAATACGGAAATCCAGGAATTTATAAACTGAAATTTCGGAAAGTTTTATATTTGAAAGTTCCGAAAAATGCGAATTCGGAAGTTCTTCTCCGATTTTGAACCTCCGGTGAGAATTTCAATATTTCCTGTTTCTCAGTTTTCGAACAGCTGAAATCTTTTATTTTCGAACTCAGAATCTCAAAAATTCATATTTTCTAGGAAGTGTAACGCTAGCAGAGATTTTCGGATTCCGGATTTCGTGATTTTTTTCATTGCGGATTCCGAGAAAAAATTTTAATCCGGATTAAAAAAATATTTGTTAACTTGCAAGAATTCGCTGTCTTTTCTGAACTTCCGCGACTAAAAAGGCAAAAATATAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTTTCTACATATTAGAGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CGTATTCCTGACTTACTGAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGGTTTCTACATATTAGAGGAAATACAGTTATCGAAATTTTCAGAACTTTAGTTGAAAATTTCGCAGTTCAAAAACTTCCATTTTGAAGACCTTGTTAGGGGTTTTTTTTTAAATTTTGAAATTATGAGTCAAATTCTGAAAATAAAACGGCGAATACAAAAGTCGGTTTACACTTTACAGTGGCTGAGCCTCTTTTATTTAAAATCTCGGAACTCTAAATTTTGAAAACTCAGTAAGTCAGGAATACG</canonical_amplicon>
		<polymorphic_amplicon>CGGTTTCTACATATTAGAGGAAATACAGTTATCGAAATTTTCAGAACTTTAGTTGAAAATTTCGCAGTTCAAAAACTTCCATTTTGAAGACCTTGTTAGGGGWTTTTTTTTAAATTTTGAAATTATGAGTCAAATTCTGAAAATAAAACGGCGAATACAAAAGTCGGTTTACACTTTACAGTGGCTGAGCCTCTTTTATTTAAAATCTCGGAACTCTAAATTTTGAAAACTCAGTAAGTCAGGAATACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25206</snp_id>
        <super_contig>c001001125.Contig1</super_contig>
        <contig_pos>19190</contig_pos>
        <strand></strand>
        <context>TTTTGAAATT[A/C]TGAGTCAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACTTCCATTTTGAAGACCTTGTTAGGGGTTTTTTTTTAAATTTTGAAATT</left_flank>
        <right_flank>TGAGTCAAATTCTGAAAATAAAACGGCGAATACAAAAGTCGGTTTACACT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATATTCACCACCAGTCGGTTTGCGCCCCTTCGGGGCTGAACCTTCTGGCCTCCGGTTACAGTACCCGTTATCTTAAAAAAAAACGTTTCTCCACTTTTATTCAGGGCATAAAAATAGGAAATTATGAAATTCGGTGTAATAGGAATTAGAAATTTTATGATGCCATATTTCCTCTAATGGAAGCTCATGGACTTCTATTTTTCAACTTCTTTCTCAGGGTGAACTTCTATTAGAAGGTCGGCTTCTATTTTTCAACAATTTATTTTCAAAAAAAAAATCAGAAATTTGACAATTCGGAAGCTAAGAATTCTGAAATTCAATGTTTTGAAAAATTCGACATTTCATTCTGCAATTGTAAATTTCAAAATTCTGACGGTTTCTACATATTAGAGGAAATACAGTTATCGAAATTTTCAGAACTTTAGTTGAAAATTTCGCAGTTCAAAAACTTCCATTTTGAAGACCTTGTTAGGGGTTTTTTTTTAAATTTTGAAATTATGAGTCAAATTCTGAAAATAAAACGGCGAATACAAAAGTCGGTTTACACTTTACAGTGGCTGAGCCTCTTTTATTTAAAATCTCGGAACTCTAAATTTTGAAAACTCAGTAAGTCAGGAATACGGAAATCCAGGAATTTATAAACTGAAATTTCGGAAAGTTTTATATTTGAAAGTTCCGAAAAATGCGAATTCGGAAGTTCTTCTCCGATTTTGAACCTCCGGTGAGAATTTCAATATTTCCTGTTTCTCAGTTTTCGAACAGCTGAAATCTTTTATTTTCGAACTCAGAATCTCAAAAATTCATATTTTCTAGGAAGTGTAACGCTAGCAGAGATTTTCGGATTCCGGATTTCGTGATTTTTTTCATTGCGGATTCCGAGAAAAAATTTTAATCCGGATTAAAAAAATATTTGTTAACTTGCAAGAATTCGCTGTCTTTTCTGAACTTCCGCGACTAAAAAGGCAAAAATATAGTTTTTAAAATTTTTCTTCCCATTT</canonical>
            <polymorphic>AAATATTCACCACCAGTCGGTTTGCGCCCCTTCGGGGCTGAACCTTCTGGCCTCCGGTTACAGTACCCGTTATCTTAAAAAAAAACGTTTCTCCACTTTTATTCAGGGCATAAAAATAGGAAATTATGAAATTCGGTGTAATAGGAATTAGAAATTTTATGATGCCATATTTCCTCTAATGGAAGCTCATGGACTTCTATTTTTCAACTTCTTTCTCAGGGTGAACTTCTATTAGAAGGTCGGCTTCTATTTTTCAACAATTTATTTTCAAAAAAAAAATCAGAAATTTGACAATTCGGAAGCTAAGAATTCTGAAATTCAATGTTTTGAAAAATTCGACATTTCATTCTGCAATTGTAAATTTCAAAATTCTGACGGTTTCTACATATTAGAGGAAATACAGTTATCGAAATTTTCAGAACTTTAGTTGAAAATTTCGCAGTTCAAAAACTTCCATTTTGAAGACCTTGTTAGGGGTTTTTTTTTAAATTTTGAAATTMTGAGTCAAATTCTGAAAATAAAACGGCGAATACAAAAGTCGGTTTACACTTTACAGTGGCTGAGCCTCTTTTATTTAAAATCTCGGAACTCTAAATTTTGAAAACTCAGTAAGTCAGGAATACGGAAATCCAGGAATTTATAAACTGAAATTTCGGAAAGTTTTATATTTGAAAGTTCCGAAAAATGCGAATTCGGAAGTTCTTCTCCGATTTTGAACCTCCGGTGAGAATTTCAATATTTCCTGTTTCTCAGTTTTCGAACAGCTGAAATCTTTTATTTTCGAACTCAGAATCTCAAAAATTCATATTTTCTAGGAAGTGTAACGCTAGCAGAGATTTTCGGATTCCGGATTTCGTGATTTTTTTCATTGCGGATTCCGAGAAAAAATTTTAATCCGGATTAAAAAAATATTTGTTAACTTGCAAGAATTCGCTGTCTTTTCTGAACTTCCGCGACTAAAAAGGCAAAAATATAGTTTTTAAAATTTTTCTTCCCATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTTTCTACATATTAGAGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CGTATTCCTGACTTACTGAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGGTTTCTACATATTAGAGGAAATACAGTTATCGAAATTTTCAGAACTTTAGTTGAAAATTTCGCAGTTCAAAAACTTCCATTTTGAAGACCTTGTTAGGGGTTTTTTTTTAAATTTTGAAATTATGAGTCAAATTCTGAAAATAAAACGGCGAATACAAAAGTCGGTTTACACTTTACAGTGGCTGAGCCTCTTTTATTTAAAATCTCGGAACTCTAAATTTTGAAAACTCAGTAAGTCAGGAATACG</canonical_amplicon>
		<polymorphic_amplicon>CGGTTTCTACATATTAGAGGAAATACAGTTATCGAAATTTTCAGAACTTTAGTTGAAAATTTCGCAGTTCAAAAACTTCCATTTTGAAGACCTTGTTAGGGGTTTTTTTTTAAATTTTGAAATTMTGAGTCAAATTCTGAAAATAAAACGGCGAATACAAAAGTCGGTTTACACTTTACAGTGGCTGAGCCTCTTTTATTTAAAATCTCGGAACTCTAAATTTTGAAAACTCAGTAAGTCAGGAATACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25207</snp_id>
        <super_contig>c001001125.Contig1</super_contig>
        <contig_pos>19208</contig_pos>
        <strand></strand>
        <context>AATTCTGAAA[A/T]TAAAACGGCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGTTAGGGGTTTTTTTTTAAATTTTGAAATTATGAGTCAAATTCTGAAA</left_flank>
        <right_flank>TAAAACGGCGAATACAAAAGTCGGTTTACACTTTACAGTGGCTGAGCCTC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTTGCGCCCCTTCGGGGCTGAACCTTCTGGCCTCCGGTTACAGTACCCGTTATCTTAAAAAAAAACGTTTCTCCACTTTTATTCAGGGCATAAAAATAGGAAATTATGAAATTCGGTGTAATAGGAATTAGAAATTTTATGATGCCATATTTCCTCTAATGGAAGCTCATGGACTTCTATTTTTCAACTTCTTTCTCAGGGTGAACTTCTATTAGAAGGTCGGCTTCTATTTTTCAACAATTTATTTTCAAAAAAAAAATCAGAAATTTGACAATTCGGAAGCTAAGAATTCTGAAATTCAATGTTTTGAAAAATTCGACATTTCATTCTGCAATTGTAAATTTCAAAATTCTGACGGTTTCTACATATTAGAGGAAATACAGTTATCGAAATTTTCAGAACTTTAGTTGAAAATTTCGCAGTTCAAAAACTTCCATTTTGAAGACCTTGTTAGGGGTTTTTTTTTAAATTTTGAAATTATGAGTCAAATTCTGAAAATAAAACGGCGAATACAAAAGTCGGTTTACACTTTACAGTGGCTGAGCCTCTTTTATTTAAAATCTCGGAACTCTAAATTTTGAAAACTCAGTAAGTCAGGAATACGGAAATCCAGGAATTTATAAACTGAAATTTCGGAAAGTTTTATATTTGAAAGTTCCGAAAAATGCGAATTCGGAAGTTCTTCTCCGATTTTGAACCTCCGGTGAGAATTTCAATATTTCCTGTTTCTCAGTTTTCGAACAGCTGAAATCTTTTATTTTCGAACTCAGAATCTCAAAAATTCATATTTTCTAGGAAGTGTAACGCTAGCAGAGATTTTCGGATTCCGGATTTCGTGATTTTTTTCATTGCGGATTCCGAGAAAAAATTTTAATCCGGATTAAAAAAATATTTGTTAACTTGCAAGAATTCGCTGTCTTTTCTGAACTTCCGCGACTAAAAAGGCAAAAATATAGTTTTTAAAATTTTTCTTCCCATTTGAAGAACTCAAAATTTCG</canonical>
            <polymorphic>GGTTTGCGCCCCTTCGGGGCTGAACCTTCTGGCCTCCGGTTACAGTACCCGTTATCTTAAAAAAAAACGTTTCTCCACTTTTATTCAGGGCATAAAAATAGGAAATTATGAAATTCGGTGTAATAGGAATTAGAAATTTTATGATGCCATATTTCCTCTAATGGAAGCTCATGGACTTCTATTTTTCAACTTCTTTCTCAGGGTGAACTTCTATTAGAAGGTCGGCTTCTATTTTTCAACAATTTATTTTCAAAAAAAAAATCAGAAATTTGACAATTCGGAAGCTAAGAATTCTGAAATTCAATGTTTTGAAAAATTCGACATTTCATTCTGCAATTGTAAATTTCAAAATTCTGACGGTTTCTACATATTAGAGGAAATACAGTTATCGAAATTTTCAGAACTTTAGTTGAAAATTTCGCAGTTCAAAAACTTCCATTTTGAAGACCTTGTTAGGGGTTTTTTTTTAAATTTTGAAATTATGAGTCAAATTCTGAAAWTAAAACGGCGAATACAAAAGTCGGTTTACACTTTACAGTGGCTGAGCCTCTTTTATTTAAAATCTCGGAACTCTAAATTTTGAAAACTCAGTAAGTCAGGAATACGGAAATCCAGGAATTTATAAACTGAAATTTCGGAAAGTTTTATATTTGAAAGTTCCGAAAAATGCGAATTCGGAAGTTCTTCTCCGATTTTGAACCTCCGGTGAGAATTTCAATATTTCCTGTTTCTCAGTTTTCGAACAGCTGAAATCTTTTATTTTCGAACTCAGAATCTCAAAAATTCATATTTTCTAGGAAGTGTAACGCTAGCAGAGATTTTCGGATTCCGGATTTCGTGATTTTTTTCATTGCGGATTCCGAGAAAAAATTTTAATCCGGATTAAAAAAATATTTGTTAACTTGCAAGAATTCGCTGTCTTTTCTGAACTTCCGCGACTAAAAAGGCAAAAATATAGTTTTTAAAATTTTTCTTCCCATTTGAAGAACTCAAAATTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTTTCTACATATTAGAGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CGTATTCCTGACTTACTGAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGGTTTCTACATATTAGAGGAAATACAGTTATCGAAATTTTCAGAACTTTAGTTGAAAATTTCGCAGTTCAAAAACTTCCATTTTGAAGACCTTGTTAGGGGTTTTTTTTTAAATTTTGAAATTATGAGTCAAATTCTGAAAATAAAACGGCGAATACAAAAGTCGGTTTACACTTTACAGTGGCTGAGCCTCTTTTATTTAAAATCTCGGAACTCTAAATTTTGAAAACTCAGTAAGTCAGGAATACG</canonical_amplicon>
		<polymorphic_amplicon>CGGTTTCTACATATTAGAGGAAATACAGTTATCGAAATTTTCAGAACTTTAGTTGAAAATTTCGCAGTTCAAAAACTTCCATTTTGAAGACCTTGTTAGGGGTTTTTTTTTAAATTTTGAAATTATGAGTCAAATTCTGAAAWTAAAACGGCGAATACAAAAGTCGGTTTACACTTTACAGTGGCTGAGCCTCTTTTATTTAAAATCTCGGAACTCTAAATTTTGAAAACTCAGTAAGTCAGGAATACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25209</snp_id>
        <super_contig>c001001125.Contig1</super_contig>
        <contig_pos>34405</contig_pos>
        <strand></strand>
        <context>taaaatgtcg[T/C]agttctgaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAATCATGGGGTTCTACAACAATTGCGCACTATGCGGTTCTAAAATGTCG</left_flank>
        <right_flank>AGTTCTGAAATGACCTAGTTGCAAAACTTCGCAGTTATAGAACGCCCGAT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGCATCCAGAAGTTCGGCAGATCTTGTCACGGCTTCCGCTGATTGCTCATGGTGGATTGCAGAGTGAGTTCTCTTTTCGGGGGGAAATTGCGCTTGAAATAGACTGAAAATGACCGAGAAATCGCATAGTTCTGAAACGTCTGGTTGAAGTTTCGCAACCGTCACGTTATAGAACGATTGCGAGATGACCTAGTTCTGAAACGTGGCCATTTCGAAACCGTGACGGTATAGAACGATTGCGAAATCGCCGGTTCTGAAACGTCGCAGTTCTGAAATGCCCTGGTTCTAGAAAGTCGCAGTTATAAAACTGACGGTTCTCCCCTTTCCTAGAAATCGGGCAGTACCAAAGACGTCACAGTTCTAAAACGTCGTAGTTATTTAACGTCCGGTTCTGAAACCTCGTGATTCTAAAACGTCCTGTCATAACGTTTCGCAACTGACCGTTTCGCAATCATGGGGTTCTACAACAATTGCGCACTATGCGGTTCTAAAATGTCGTAGTTCTGAAATGACCTAGTTGCAAAACTTCGCAGTTATAGAACGCCCGATTTAAAAACATTTAAAGTTACCTAACTCTACTGCGACAAAACCTTTTGGCTCTCGGTCCAAAAAGTTCTAAAACGTCGCAGTTCTAAAATCTCCCATTTTCAGTTCTGATGCGAGAGCCCGTCTCATCGGACAAACGAGATATTCATGCTGGATTCTGTAAAGAAGCTTGTCAACTGCTTCAAGTGGTCGCTGGGAAGAAGATACATTTCGATCATCACGCCAAAGAGATTCGATCATCGGTTAGTTATAGAAAACGTCGCAGTTCTAAAATGTAATAACAAGTCCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAATTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGCAGTTCTAGAACTTCCTTAAAAGTTCAAAAACATCGCAGTTCTAAAA</canonical>
            <polymorphic>AGGCATCCAGAAGTTCGGCAGATCTTGTCACGGCTTCCGCTGATTGCTCATGGTGGATTGCAGAGTGAGTTCTCTTTTCGGGGGGAAATTGCGCTTGAAATAGACTGAAAATGACCGAGAAATCGCATAGTTCTGAAACGTCTGGTTGAAGTTTCGCAACCGTCACGTTATAGAACGATTGCGAGATGACCTAGTTCTGAAACGTGGCCATTTCGAAACCGTGACGGTATAGAACGATTGCGAAATCGCCGGTTCTGAAACGTCGCAGTTCTGAAATGCCCTGGTTCTAGAAAGTCGCAGTTATAAAACTGACGGTTCTCCCCTTTCCTAGAAATCGGGCAGTACCAAAGACGTCACAGTTCTAAAACGTCGTAGTTATTTAACGTCCGGTTCTGAAACCTCGTGATTCTAAAACGTCCTGTCATAACGTTTCGCAACTGACCGTTTCGCAATCATGGGGTTCTACAACAATTGCGCACTATGCGGTTCTAAAATGTCGYAGTTCTGAAATGACCTAGTTGCAAAACTTCGCAGTTATAGAACGCCCGATTTAAAAACATTTAAAGTTACCTAACTCTACTGCGACAAAACCTTTTGGCTCTCGGTCCAAAAAGTTCTAAAACGTCGCAGTTCTAAAATCTCCCATTTTCAGTTCTGATGCGAGAGCCCGTCTCATCGGACAAACGAGATATTCATGCTGGATTCTGTAAAGAAGCTTGTCAACTGCTTCAAGTGGTCGCTGGGAAGAAGATACATTTCGATCATCACGCCAAAGAGATTCGATCATCGGTTAGTTATAGAAAACGTCGCAGTTCTAAAATGTAATAACAAGTCCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAATTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGCAGTTCTAGAACTTCCTTAAAAGTTCAAAAACATCGCAGTTCTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGATGACCTAGTTCTGAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATATCTCGTTTGTCCGATGA</pcr_primer_p2>
		<pcr_amplicon_size>511</pcr_amplicon_size>
		<canonical_amplicon>CGAGATGACCTAGTTCTGAAACGTGGCCATTTCGAAACCGTGACGGTATAGAACGATTGCGAAATCGCCGGTTCTGAAACGTCGCAGTTCTGAAATGCCCTGGTTCTAGAAAGTCGCAGTTATAAAACTGACGGTTCTCCCCTTTCCTAGAAATCGGGCAGTACCAAAGACGTCACAGTTCTAAAACGTCGTAGTTATTTAACGTCCGGTTCTGAAACCTCGTGATTCTAAAACGTCCTGTCATAACGTTTCGCAACTGACCGTTTCGCAATCATGGGGTTCTACAACAATTGCGCACTATGCGGTTCTAAAATGTCGTAGTTCTGAAATGACCTAGTTGCAAAACTTCGCAGTTATAGAACGCCCGATTTAAAAACATTTAAAGTTACCTAACTCTACTGCGACAAAACCTTTTGGCTCTCGGTCCAAAAAGTTCTAAAACGTCGCAGTTCTAAAATCTCCCATTTTCAGTTCTGATGCGAGAGCCCGTCTCATCGGACAAACGAGATAT</canonical_amplicon>
		<polymorphic_amplicon>CGAGATGACCTAGTTCTGAAACGTGGCCATTTCGAAACCGTGACGGTATAGAACGATTGCGAAATCGCCGGTTCTGAAACGTCGCAGTTCTGAAATGCCCTGGTTCTAGAAAGTCGCAGTTATAAAACTGACGGTTCTCCCCTTTCCTAGAAATCGGGCAGTACCAAAGACGTCACAGTTCTAAAACGTCGTAGTTATTTAACGTCCGGTTCTGAAACCTCGTGATTCTAAAACGTCCTGTCATAACGTTTCGCAACTGACCGTTTCGCAATCATGGGGTTCTACAACAATTGCGCACTATGCGGTTCTAAAATGTCGYAGTTCTGAAATGACCTAGTTGCAAAACTTCGCAGTTATAGAACGCCCGATTTAAAAACATTTAAAGTTACCTAACTCTACTGCGACAAAACCTTTTGGCTCTCGGTCCAAAAAGTTCTAAAACGTCGCAGTTCTAAAATCTCCCATTTTCAGTTCTGATGCGAGAGCCCGTCTCATCGGACAAACGAGATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25210</snp_id>
        <super_contig>c001001125.Contig1</super_contig>
        <contig_pos>34479</contig_pos>
        <strand></strand>
        <context>aagttaccta[A/G]ctcwactgcg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACTTCGCAGTTATAGAACGCCCGATTTAAAAACATTTAAAGTTACCTA</left_flank>
        <right_flank>CTCTACTGCGACAAAACCTTTTGGCTCTCGGTCCAAAAAGTTCTAAAACG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCGGGGGGAAATTGCGCTTGAAATAGACTGAAAATGACCGAGAAATCGCATAGTTCTGAAACGTCTGGTTGAAGTTTCGCAACCGTCACGTTATAGAACGATTGCGAGATGACCTAGTTCTGAAACGTGGCCATTTCGAAACCGTGACGGTATAGAACGATTGCGAAATCGCCGGTTCTGAAACGTCGCAGTTCTGAAATGCCCTGGTTCTAGAAAGTCGCAGTTATAAAACTGACGGTTCTCCCCTTTCCTAGAAATCGGGCAGTACCAAAGACGTCACAGTTCTAAAACGTCGTAGTTATTTAACGTCCGGTTCTGAAACCTCGTGATTCTAAAACGTCCTGTCATAACGTTTCGCAACTGACCGTTTCGCAATCATGGGGTTCTACAACAATTGCGCACTATGCGGTTCTAAAATGTCGTAGTTCTGAAATGACCTAGTTGCAAAACTTCGCAGTTATAGAACGCCCGATTTAAAAACATTTAAAGTTACCTAACTCTACTGCGACAAAACCTTTTGGCTCTCGGTCCAAAAAGTTCTAAAACGTCGCAGTTCTAAAATCTCCCATTTTCAGTTCTGATGCGAGAGCCCGTCTCATCGGACAAACGAGATATTCATGCTGGATTCTGTAAAGAAGCTTGTCAACTGCTTCAAGTGGTCGCTGGGAAGAAGATACATTTCGATCATCACGCCAAAGAGATTCGATCATCGGTTAGTTATAGAAAACGTCGCAGTTCTAAAATGTAATAACAAGTCCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAATTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGCAGTTCTAGAACTTCCTTAAAAGTTCAAAAACATCGCAGTTCTAAAATGTCTTCAAAGTTCTAGAACGTCGTAGTTCTAAAATGTCCTCATAAAGTTCTAAAATGTCGCAGTTCTAAAATG</canonical>
            <polymorphic>TTTTCGGGGGGAAATTGCGCTTGAAATAGACTGAAAATGACCGAGAAATCGCATAGTTCTGAAACGTCTGGTTGAAGTTTCGCAACCGTCACGTTATAGAACGATTGCGAGATGACCTAGTTCTGAAACGTGGCCATTTCGAAACCGTGACGGTATAGAACGATTGCGAAATCGCCGGTTCTGAAACGTCGCAGTTCTGAAATGCCCTGGTTCTAGAAAGTCGCAGTTATAAAACTGACGGTTCTCCCCTTTCCTAGAAATCGGGCAGTACCAAAGACGTCACAGTTCTAAAACGTCGTAGTTATTTAACGTCCGGTTCTGAAACCTCGTGATTCTAAAACGTCCTGTCATAACGTTTCGCAACTGACCGTTTCGCAATCATGGGGTTCTACAACAATTGCGCACTATGCGGTTCTAAAATGTCGTAGTTCTGAAATGACCTAGTTGCAAAACTTCGCAGTTATAGAACGCCCGATTTAAAAACATTTAAAGTTACCTARCTCTACTGCGACAAAACCTTTTGGCTCTCGGTCCAAAAAGTTCTAAAACGTCGCAGTTCTAAAATCTCCCATTTTCAGTTCTGATGCGAGAGCCCGTCTCATCGGACAAACGAGATATTCATGCTGGATTCTGTAAAGAAGCTTGTCAACTGCTTCAAGTGGTCGCTGGGAAGAAGATACATTTCGATCATCACGCCAAAGAGATTCGATCATCGGTTAGTTATAGAAAACGTCGCAGTTCTAAAATGTAATAACAAGTCCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAATTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGCAGTTCTAGAACTTCCTTAAAAGTTCAAAAACATCGCAGTTCTAAAATGTCTTCAAAGTTCTAGAACGTCGTAGTTCTAAAATGTCCTCATAAAGTTCTAAAATGTCGCAGTTCTAAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGATGACCTAGTTCTGAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATATCTCGTTTGTCCGATGA</pcr_primer_p2>
		<pcr_amplicon_size>511</pcr_amplicon_size>
		<canonical_amplicon>CGAGATGACCTAGTTCTGAAACGTGGCCATTTCGAAACCGTGACGGTATAGAACGATTGCGAAATCGCCGGTTCTGAAACGTCGCAGTTCTGAAATGCCCTGGTTCTAGAAAGTCGCAGTTATAAAACTGACGGTTCTCCCCTTTCCTAGAAATCGGGCAGTACCAAAGACGTCACAGTTCTAAAACGTCGTAGTTATTTAACGTCCGGTTCTGAAACCTCGTGATTCTAAAACGTCCTGTCATAACGTTTCGCAACTGACCGTTTCGCAATCATGGGGTTCTACAACAATTGCGCACTATGCGGTTCTAAAATGTCGTAGTTCTGAAATGACCTAGTTGCAAAACTTCGCAGTTATAGAACGCCCGATTTAAAAACATTTAAAGTTACCTAACTCTACTGCGACAAAACCTTTTGGCTCTCGGTCCAAAAAGTTCTAAAACGTCGCAGTTCTAAAATCTCCCATTTTCAGTTCTGATGCGAGAGCCCGTCTCATCGGACAAACGAGATAT</canonical_amplicon>
		<polymorphic_amplicon>CGAGATGACCTAGTTCTGAAACGTGGCCATTTCGAAACCGTGACGGTATAGAACGATTGCGAAATCGCCGGTTCTGAAACGTCGCAGTTCTGAAATGCCCTGGTTCTAGAAAGTCGCAGTTATAAAACTGACGGTTCTCCCCTTTCCTAGAAATCGGGCAGTACCAAAGACGTCACAGTTCTAAAACGTCGTAGTTATTTAACGTCCGGTTCTGAAACCTCGTGATTCTAAAACGTCCTGTCATAACGTTTCGCAACTGACCGTTTCGCAATCATGGGGTTCTACAACAATTGCGCACTATGCGGTTCTAAAATGTCGTAGTTCTGAAATGACCTAGTTGCAAAACTTCGCAGTTATAGAACGCCCGATTTAAAAACATTTAAAGTTACCTARCTCTACTGCGACAAAACCTTTTGGCTCTCGGTCCAAAAAGTTCTAAAACGTCGCAGTTCTAAAATCTCCCATTTTCAGTTCTGATGCGAGAGCCCGTCTCATCGGACAAACGAGATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25211</snp_id>
        <super_contig>c001001125.Contig1</super_contig>
        <contig_pos>34483</contig_pos>
        <strand></strand>
        <context>tacctarctc[T/A]actgcgacaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTCGCAGTTATAGAACGCCCGATTTAAAAACATTTAAAGTTACCTAACTC</left_flank>
        <right_flank>ACTGCGACAAAACCTTTTGGCTCTCGGTCCAAAAAGTTCTAAAACGTCGC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGGGGGAAATTGCGCTTGAAATAGACTGAAAATGACCGAGAAATCGCATAGTTCTGAAACGTCTGGTTGAAGTTTCGCAACCGTCACGTTATAGAACGATTGCGAGATGACCTAGTTCTGAAACGTGGCCATTTCGAAACCGTGACGGTATAGAACGATTGCGAAATCGCCGGTTCTGAAACGTCGCAGTTCTGAAATGCCCTGGTTCTAGAAAGTCGCAGTTATAAAACTGACGGTTCTCCCCTTTCCTAGAAATCGGGCAGTACCAAAGACGTCACAGTTCTAAAACGTCGTAGTTATTTAACGTCCGGTTCTGAAACCTCGTGATTCTAAAACGTCCTGTCATAACGTTTCGCAACTGACCGTTTCGCAATCATGGGGTTCTACAACAATTGCGCACTATGCGGTTCTAAAATGTCGTAGTTCTGAAATGACCTAGTTGCAAAACTTCGCAGTTATAGAACGCCCGATTTAAAAACATTTAAAGTTACCTAACTCTACTGCGACAAAACCTTTTGGCTCTCGGTCCAAAAAGTTCTAAAACGTCGCAGTTCTAAAATCTCCCATTTTCAGTTCTGATGCGAGAGCCCGTCTCATCGGACAAACGAGATATTCATGCTGGATTCTGTAAAGAAGCTTGTCAACTGCTTCAAGTGGTCGCTGGGAAGAAGATACATTTCGATCATCACGCCAAAGAGATTCGATCATCGGTTAGTTATAGAAAACGTCGCAGTTCTAAAATGTAATAACAAGTCCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAATTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGCAGTTCTAGAACTTCCTTAAAAGTTCAAAAACATCGCAGTTCTAAAATGTCTTCAAAGTTCTAGAACGTCGTAGTTCTAAAATGTCCTCATAAAGTTCTAAAATGTCGCAGTTCTAAAATGTCCT</canonical>
            <polymorphic>CGGGGGGAAATTGCGCTTGAAATAGACTGAAAATGACCGAGAAATCGCATAGTTCTGAAACGTCTGGTTGAAGTTTCGCAACCGTCACGTTATAGAACGATTGCGAGATGACCTAGTTCTGAAACGTGGCCATTTCGAAACCGTGACGGTATAGAACGATTGCGAAATCGCCGGTTCTGAAACGTCGCAGTTCTGAAATGCCCTGGTTCTAGAAAGTCGCAGTTATAAAACTGACGGTTCTCCCCTTTCCTAGAAATCGGGCAGTACCAAAGACGTCACAGTTCTAAAACGTCGTAGTTATTTAACGTCCGGTTCTGAAACCTCGTGATTCTAAAACGTCCTGTCATAACGTTTCGCAACTGACCGTTTCGCAATCATGGGGTTCTACAACAATTGCGCACTATGCGGTTCTAAAATGTCGTAGTTCTGAAATGACCTAGTTGCAAAACTTCGCAGTTATAGAACGCCCGATTTAAAAACATTTAAAGTTACCTAACTCWACTGCGACAAAACCTTTTGGCTCTCGGTCCAAAAAGTTCTAAAACGTCGCAGTTCTAAAATCTCCCATTTTCAGTTCTGATGCGAGAGCCCGTCTCATCGGACAAACGAGATATTCATGCTGGATTCTGTAAAGAAGCTTGTCAACTGCTTCAAGTGGTCGCTGGGAAGAAGATACATTTCGATCATCACGCCAAAGAGATTCGATCATCGGTTAGTTATAGAAAACGTCGCAGTTCTAAAATGTAATAACAAGTCCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAATTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGCAGTTCTAGAACTTCCTTAAAAGTTCAAAAACATCGCAGTTCTAAAATGTCTTCAAAGTTCTAGAACGTCGTAGTTCTAAAATGTCCTCATAAAGTTCTAAAATGTCGCAGTTCTAAAATGTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGATGACCTAGTTCTGAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATATCTCGTTTGTCCGATGA</pcr_primer_p2>
		<pcr_amplicon_size>511</pcr_amplicon_size>
		<canonical_amplicon>CGAGATGACCTAGTTCTGAAACGTGGCCATTTCGAAACCGTGACGGTATAGAACGATTGCGAAATCGCCGGTTCTGAAACGTCGCAGTTCTGAAATGCCCTGGTTCTAGAAAGTCGCAGTTATAAAACTGACGGTTCTCCCCTTTCCTAGAAATCGGGCAGTACCAAAGACGTCACAGTTCTAAAACGTCGTAGTTATTTAACGTCCGGTTCTGAAACCTCGTGATTCTAAAACGTCCTGTCATAACGTTTCGCAACTGACCGTTTCGCAATCATGGGGTTCTACAACAATTGCGCACTATGCGGTTCTAAAATGTCGTAGTTCTGAAATGACCTAGTTGCAAAACTTCGCAGTTATAGAACGCCCGATTTAAAAACATTTAAAGTTACCTAACTCTACTGCGACAAAACCTTTTGGCTCTCGGTCCAAAAAGTTCTAAAACGTCGCAGTTCTAAAATCTCCCATTTTCAGTTCTGATGCGAGAGCCCGTCTCATCGGACAAACGAGATAT</canonical_amplicon>
		<polymorphic_amplicon>CGAGATGACCTAGTTCTGAAACGTGGCCATTTCGAAACCGTGACGGTATAGAACGATTGCGAAATCGCCGGTTCTGAAACGTCGCAGTTCTGAAATGCCCTGGTTCTAGAAAGTCGCAGTTATAAAACTGACGGTTCTCCCCTTTCCTAGAAATCGGGCAGTACCAAAGACGTCACAGTTCTAAAACGTCGTAGTTATTTAACGTCCGGTTCTGAAACCTCGTGATTCTAAAACGTCCTGTCATAACGTTTCGCAACTGACCGTTTCGCAATCATGGGGTTCTACAACAATTGCGCACTATGCGGTTCTAAAATGTCGTAGTTCTGAAATGACCTAGTTGCAAAACTTCGCAGTTATAGAACGCCCGATTTAAAAACATTTAAAGTTACCTAACTCWACTGCGACAAAACCTTTTGGCTCTCGGTCCAAAAAGTTCTAAAACGTCGCAGTTCTAAAATCTCCCATTTTCAGTTCTGATGCGAGAGCCCGTCTCATCGGACAAACGAGATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25212</snp_id>
        <super_contig>c001001125.Contig1</super_contig>
        <contig_pos>34508</contig_pos>
        <strand></strand>
        <context>ttttggctct[C/T]ggtccaaaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAACATTTAAAGTTACCTAACTCTACTGCGACAAAACCTTTTGGCTCT</left_flank>
        <right_flank>GGTCCAAAAAGTTCTAAAACGTCGCAGTTCTAAAATCTCCCATTTTCAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGAAAATGACCGAGAAATCGCATAGTTCTGAAACGTCTGGTTGAAGTTTCGCAACCGTCACGTTATAGAACGATTGCGAGATGACCTAGTTCTGAAACGTGGCCATTTCGAAACCGTGACGGTATAGAACGATTGCGAAATCGCCGGTTCTGAAACGTCGCAGTTCTGAAATGCCCTGGTTCTAGAAAGTCGCAGTTATAAAACTGACGGTTCTCCCCTTTCCTAGAAATCGGGCAGTACCAAAGACGTCACAGTTCTAAAACGTCGTAGTTATTTAACGTCCGGTTCTGAAACCTCGTGATTCTAAAACGTCCTGTCATAACGTTTCGCAACTGACCGTTTCGCAATCATGGGGTTCTACAACAATTGCGCACTATGCGGTTCTAAAATGTCGTAGTTCTGAAATGACCTAGTTGCAAAACTTCGCAGTTATAGAACGCCCGATTTAAAAACATTTAAAGTTACCTAACTCTACTGCGACAAAACCTTTTGGCTCTCGGTCCAAAAAGTTCTAAAACGTCGCAGTTCTAAAATCTCCCATTTTCAGTTCTGATGCGAGAGCCCGTCTCATCGGACAAACGAGATATTCATGCTGGATTCTGTAAAGAAGCTTGTCAACTGCTTCAAGTGGTCGCTGGGAAGAAGATACATTTCGATCATCACGCCAAAGAGATTCGATCATCGGTTAGTTATAGAAAACGTCGCAGTTCTAAAATGTAATAACAAGTCCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAATTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGCAGTTCTAGAACTTCCTTAAAAGTTCAAAAACATCGCAGTTCTAAAATGTCTTCAAAGTTCTAGAACGTCGTAGTTCTAAAATGTCCTCATAAAGTTCTAAAATGTCGCAGTTCTAAAATGTCCTAAAAAGTTCTAAACCGTCCCCTATT</canonical>
            <polymorphic>ACTGAAAATGACCGAGAAATCGCATAGTTCTGAAACGTCTGGTTGAAGTTTCGCAACCGTCACGTTATAGAACGATTGCGAGATGACCTAGTTCTGAAACGTGGCCATTTCGAAACCGTGACGGTATAGAACGATTGCGAAATCGCCGGTTCTGAAACGTCGCAGTTCTGAAATGCCCTGGTTCTAGAAAGTCGCAGTTATAAAACTGACGGTTCTCCCCTTTCCTAGAAATCGGGCAGTACCAAAGACGTCACAGTTCTAAAACGTCGTAGTTATTTAACGTCCGGTTCTGAAACCTCGTGATTCTAAAACGTCCTGTCATAACGTTTCGCAACTGACCGTTTCGCAATCATGGGGTTCTACAACAATTGCGCACTATGCGGTTCTAAAATGTCGTAGTTCTGAAATGACCTAGTTGCAAAACTTCGCAGTTATAGAACGCCCGATTTAAAAACATTTAAAGTTACCTAACTCTACTGCGACAAAACCTTTTGGCTCTYGGTCCAAAAAGTTCTAAAACGTCGCAGTTCTAAAATCTCCCATTTTCAGTTCTGATGCGAGAGCCCGTCTCATCGGACAAACGAGATATTCATGCTGGATTCTGTAAAGAAGCTTGTCAACTGCTTCAAGTGGTCGCTGGGAAGAAGATACATTTCGATCATCACGCCAAAGAGATTCGATCATCGGTTAGTTATAGAAAACGTCGCAGTTCTAAAATGTAATAACAAGTCCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAATTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGCAGTTCTAGAACTTCCTTAAAAGTTCAAAAACATCGCAGTTCTAAAATGTCTTCAAAGTTCTAGAACGTCGTAGTTCTAAAATGTCCTCATAAAGTTCTAAAATGTCGCAGTTCTAAAATGTCCTAAAAAGTTCTAAACCGTCCCCTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGATGACCTAGTTCTGAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATATCTCGTTTGTCCGATGA</pcr_primer_p2>
		<pcr_amplicon_size>511</pcr_amplicon_size>
		<canonical_amplicon>CGAGATGACCTAGTTCTGAAACGTGGCCATTTCGAAACCGTGACGGTATAGAACGATTGCGAAATCGCCGGTTCTGAAACGTCGCAGTTCTGAAATGCCCTGGTTCTAGAAAGTCGCAGTTATAAAACTGACGGTTCTCCCCTTTCCTAGAAATCGGGCAGTACCAAAGACGTCACAGTTCTAAAACGTCGTAGTTATTTAACGTCCGGTTCTGAAACCTCGTGATTCTAAAACGTCCTGTCATAACGTTTCGCAACTGACCGTTTCGCAATCATGGGGTTCTACAACAATTGCGCACTATGCGGTTCTAAAATGTCGTAGTTCTGAAATGACCTAGTTGCAAAACTTCGCAGTTATAGAACGCCCGATTTAAAAACATTTAAAGTTACCTAACTCTACTGCGACAAAACCTTTTGGCTCTCGGTCCAAAAAGTTCTAAAACGTCGCAGTTCTAAAATCTCCCATTTTCAGTTCTGATGCGAGAGCCCGTCTCATCGGACAAACGAGATAT</canonical_amplicon>
		<polymorphic_amplicon>CGAGATGACCTAGTTCTGAAACGTGGCCATTTCGAAACCGTGACGGTATAGAACGATTGCGAAATCGCCGGTTCTGAAACGTCGCAGTTCTGAAATGCCCTGGTTCTAGAAAGTCGCAGTTATAAAACTGACGGTTCTCCCCTTTCCTAGAAATCGGGCAGTACCAAAGACGTCACAGTTCTAAAACGTCGTAGTTATTTAACGTCCGGTTCTGAAACCTCGTGATTCTAAAACGTCCTGTCATAACGTTTCGCAACTGACCGTTTCGCAATCATGGGGTTCTACAACAATTGCGCACTATGCGGTTCTAAAATGTCGTAGTTCTGAAATGACCTAGTTGCAAAACTTCGCAGTTATAGAACGCCCGATTTAAAAACATTTAAAGTTACCTAACTCTACTGCGACAAAACCTTTTGGCTCTYGGTCCAAAAAGTTCTAAAACGTCGCAGTTCTAAAATCTCCCATTTTCAGTTCTGATGCGAGAGCCCGTCTCATCGGACAAACGAGATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25213</snp_id>
        <super_contig>c001001125.Contig1</super_contig>
        <contig_pos>34519</contig_pos>
        <strand></strand>
        <context>ggtccaaaaa[G/T]ttctaaaacg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGTTACCTAACTCTACTGCGACAAAACCTTTTGGCTCTCGGTCCAAAAA</left_flank>
        <right_flank>TTCTAAAACGTCGCAGTTCTAAAATCTCCCATTTTCAGTTCTGATGCGAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGAGAAATCGCATAGTTCTGAAACGTCTGGTTGAAGTTTCGCAACCGTCACGTTATAGAACGATTGCGAGATGACCTAGTTCTGAAACGTGGCCATTTCGAAACCGTGACGGTATAGAACGATTGCGAAATCGCCGGTTCTGAAACGTCGCAGTTCTGAAATGCCCTGGTTCTAGAAAGTCGCAGTTATAAAACTGACGGTTCTCCCCTTTCCTAGAAATCGGGCAGTACCAAAGACGTCACAGTTCTAAAACGTCGTAGTTATTTAACGTCCGGTTCTGAAACCTCGTGATTCTAAAACGTCCTGTCATAACGTTTCGCAACTGACCGTTTCGCAATCATGGGGTTCTACAACAATTGCGCACTATGCGGTTCTAAAATGTCGTAGTTCTGAAATGACCTAGTTGCAAAACTTCGCAGTTATAGAACGCCCGATTTAAAAACATTTAAAGTTACCTAACTCTACTGCGACAAAACCTTTTGGCTCTCGGTCCAAAAAGTTCTAAAACGTCGCAGTTCTAAAATCTCCCATTTTCAGTTCTGATGCGAGAGCCCGTCTCATCGGACAAACGAGATATTCATGCTGGATTCTGTAAAGAAGCTTGTCAACTGCTTCAAGTGGTCGCTGGGAAGAAGATACATTTCGATCATCACGCCAAAGAGATTCGATCATCGGTTAGTTATAGAAAACGTCGCAGTTCTAAAATGTAATAACAAGTCCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAATTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGCAGTTCTAGAACTTCCTTAAAAGTTCAAAAACATCGCAGTTCTAAAATGTCTTCAAAGTTCTAGAACGTCGTAGTTCTAAAATGTCCTCATAAAGTTCTAAAATGTCGCAGTTCTAAAATGTCCTAAAAAGTTCTAAACCGTCCCCTATTCTTCCAGGACA</canonical>
            <polymorphic>CCGAGAAATCGCATAGTTCTGAAACGTCTGGTTGAAGTTTCGCAACCGTCACGTTATAGAACGATTGCGAGATGACCTAGTTCTGAAACGTGGCCATTTCGAAACCGTGACGGTATAGAACGATTGCGAAATCGCCGGTTCTGAAACGTCGCAGTTCTGAAATGCCCTGGTTCTAGAAAGTCGCAGTTATAAAACTGACGGTTCTCCCCTTTCCTAGAAATCGGGCAGTACCAAAGACGTCACAGTTCTAAAACGTCGTAGTTATTTAACGTCCGGTTCTGAAACCTCGTGATTCTAAAACGTCCTGTCATAACGTTTCGCAACTGACCGTTTCGCAATCATGGGGTTCTACAACAATTGCGCACTATGCGGTTCTAAAATGTCGTAGTTCTGAAATGACCTAGTTGCAAAACTTCGCAGTTATAGAACGCCCGATTTAAAAACATTTAAAGTTACCTAACTCTACTGCGACAAAACCTTTTGGCTCTCGGTCCAAAAAKTTCTAAAACGTCGCAGTTCTAAAATCTCCCATTTTCAGTTCTGATGCGAGAGCCCGTCTCATCGGACAAACGAGATATTCATGCTGGATTCTGTAAAGAAGCTTGTCAACTGCTTCAAGTGGTCGCTGGGAAGAAGATACATTTCGATCATCACGCCAAAGAGATTCGATCATCGGTTAGTTATAGAAAACGTCGCAGTTCTAAAATGTAATAACAAGTCCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAATTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGCAGTTCTAGAACTTCCTTAAAAGTTCAAAAACATCGCAGTTCTAAAATGTCTTCAAAGTTCTAGAACGTCGTAGTTCTAAAATGTCCTCATAAAGTTCTAAAATGTCGCAGTTCTAAAATGTCCTAAAAAGTTCTAAACCGTCCCCTATTCTTCCAGGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGATGACCTAGTTCTGAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATATCTCGTTTGTCCGATGA</pcr_primer_p2>
		<pcr_amplicon_size>511</pcr_amplicon_size>
		<canonical_amplicon>CGAGATGACCTAGTTCTGAAACGTGGCCATTTCGAAACCGTGACGGTATAGAACGATTGCGAAATCGCCGGTTCTGAAACGTCGCAGTTCTGAAATGCCCTGGTTCTAGAAAGTCGCAGTTATAAAACTGACGGTTCTCCCCTTTCCTAGAAATCGGGCAGTACCAAAGACGTCACAGTTCTAAAACGTCGTAGTTATTTAACGTCCGGTTCTGAAACCTCGTGATTCTAAAACGTCCTGTCATAACGTTTCGCAACTGACCGTTTCGCAATCATGGGGTTCTACAACAATTGCGCACTATGCGGTTCTAAAATGTCGTAGTTCTGAAATGACCTAGTTGCAAAACTTCGCAGTTATAGAACGCCCGATTTAAAAACATTTAAAGTTACCTAACTCTACTGCGACAAAACCTTTTGGCTCTCGGTCCAAAAAGTTCTAAAACGTCGCAGTTCTAAAATCTCCCATTTTCAGTTCTGATGCGAGAGCCCGTCTCATCGGACAAACGAGATAT</canonical_amplicon>
		<polymorphic_amplicon>CGAGATGACCTAGTTCTGAAACGTGGCCATTTCGAAACCGTGACGGTATAGAACGATTGCGAAATCGCCGGTTCTGAAACGTCGCAGTTCTGAAATGCCCTGGTTCTAGAAAGTCGCAGTTATAAAACTGACGGTTCTCCCCTTTCCTAGAAATCGGGCAGTACCAAAGACGTCACAGTTCTAAAACGTCGTAGTTATTTAACGTCCGGTTCTGAAACCTCGTGATTCTAAAACGTCCTGTCATAACGTTTCGCAACTGACCGTTTCGCAATCATGGGGTTCTACAACAATTGCGCACTATGCGGTTCTAAAATGTCGTAGTTCTGAAATGACCTAGTTGCAAAACTTCGCAGTTATAGAACGCCCGATTTAAAAACATTTAAAGTTACCTAACTCTACTGCGACAAAACCTTTTGGCTCTCGGTCCAAAAAKTTCTAAAACGTCGCAGTTCTAAAATCTCCCATTTTCAGTTCTGATGCGAGAGCCCGTCTCATCGGACAAACGAGATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25214</snp_id>
        <super_contig>c001001125.Contig1</super_contig>
        <contig_pos>34739</contig_pos>
        <strand></strand>
        <context>aataacaagt[C/T]ctgaaacgtc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATCGGTTAGTTATAGAAAACGTCGCAGTTCTAAAATGTAATAACAAGT</left_flank>
        <right_flank>CTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGTAG</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGGGCAGTACCAAAGACGTCACAGTTCTAAAACGTCGTAGTTATTTAACGTCCGGTTCTGAAACCTCGTGATTCTAAAACGTCCTGTCATAACGTTTCGCAACTGACCGTTTCGCAATCATGGGGTTCTACAACAATTGCGCACTATGCGGTTCTAAAATGTCGTAGTTCTGAAATGACCTAGTTGCAAAACTTCGCAGTTATAGAACGCCCGATTTAAAAACATTTAAAGTTACCTAACTCTACTGCGACAAAACCTTTTGGCTCTCGGTCCAAAAAGTTCTAAAACGTCGCAGTTCTAAAATCTCCCATTTTCAGTTCTGATGCGAGAGCCCGTCTCATCGGACAAACGAGATATTCATGCTGGATTCTGTAAAGAAGCTTGTCAACTGCTTCAAGTGGTCGCTGGGAAGAAGATACATTTCGATCATCACGCCAAAGAGATTCGATCATCGGTTAGTTATAGAAAACGTCGCAGTTCTAAAATGTAATAACAAGTCCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAATTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGCAGTTCTAGAACTTCCTTAAAAGTTCAAAAACATCGCAGTTCTAAAATGTCTTCAAAGTTCTAGAACGTCGTAGTTCTAAAATGTCCTCATAAAGTTCTAAAATGTCGCAGTTCTAAAATGTCCTAAAAAGTTCTAAACCGTCCCCTATTCTTCCAGGACAAGTCCCACCGTCAATGGGTCGTCGAGAACACGCCAGTAAGCTTCAACCAAGTCGAACTTCTTCAACTAATCCACGATCATCTCATCAAAAATCAACTGGACAATGTGGCATCACTTCTGAAGACAGAAGCGAAACTTCCCGATCGTCCAGCATCTCGATCCAACAGCACAACGTCGTTCCTCTCGAAACCCTTACCGAGTACCGGCAACAATTTCTCCAA</canonical>
            <polymorphic>TCGGGCAGTACCAAAGACGTCACAGTTCTAAAACGTCGTAGTTATTTAACGTCCGGTTCTGAAACCTCGTGATTCTAAAACGTCCTGTCATAACGTTTCGCAACTGACCGTTTCGCAATCATGGGGTTCTACAACAATTGCGCACTATGCGGTTCTAAAATGTCGTAGTTCTGAAATGACCTAGTTGCAAAACTTCGCAGTTATAGAACGCCCGATTTAAAAACATTTAAAGTTACCTAACTCTACTGCGACAAAACCTTTTGGCTCTCGGTCCAAAAAGTTCTAAAACGTCGCAGTTCTAAAATCTCCCATTTTCAGTTCTGATGCGAGAGCCCGTCTCATCGGACAAACGAGATATTCATGCTGGATTCTGTAAAGAAGCTTGTCAACTGCTTCAAGTGGTCGCTGGGAAGAAGATACATTTCGATCATCACGCCAAAGAGATTCGATCATCGGTTAGTTATAGAAAACGTCGCAGTTCTAAAATGTAATAACAAGTYCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAATTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGCAGTTCTAGAACTTCCTTAAAAGTTCAAAAACATCGCAGTTCTAAAATGTCTTCAAAGTTCTAGAACGTCGTAGTTCTAAAATGTCCTCATAAAGTTCTAAAATGTCGCAGTTCTAAAATGTCCTAAAAAGTTCTAAACCGTCCCCTATTCTTCCAGGACAAGTCCCACCGTCAATGGGTCGTCGAGAACACGCCAGTAAGCTTCAACCAAGTCGAACTTCTTCAACTAATCCACGATCATCTCATCAAAAATCAACTGGACAATGTGGCATCACTTCTGAAGACAGAAGCGAAACTTCCCGATCGTCCAGCATCTCGATCCAACAGCACAACGTCGTTCCTCTCGAAACCCTTACCGAGTACCGGCAACAATTTCTCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>432 125 123 115 68 55 38 28 16</canonical_bands>
                <polymorphic_bands>557 123 115 68 55 38 28 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCGATCATCGGTTAGTTATAG</pcr_primer_p1>
		<pcr_primer_p2>GGGACGGTTTAGAACTTTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>ATTCGATCATCGGTTAGTTATAGAAAACGTCGCAGTTCTAAAATGTAATAACAAGTCCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAATTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGCAGTTCTAGAACTTCCTTAAAAGTTCAAAAACATCGCAGTTCTAAAATGTCTTCAAAGTTCTAGAACGTCGTAGTTCTAAAATGTCCTCATAAAGTTCTAAAATGTCGCAGTTCTAAAATGTCCTAAAAAGTTCTAAACCGTCCC</canonical_amplicon>
		<polymorphic_amplicon>ATTCGATCATCGGTTAGTTATAGAAAACGTCGCAGTTCTAAAATGTAATAACAAGTYCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAATTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGCAGTTCTAGAACTTCCTTAAAAGTTCAAAAACATCGCAGTTCTAAAATGTCTTCAAAGTTCTAGAACGTCGTAGTTCTAAAATGTCCTCATAAAGTTCTAAAATGTCGCAGTTCTAAAATGTCCTAAAAAGTTCTAAACCGTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25215</snp_id>
        <super_contig>c001001125.Contig1</super_contig>
        <contig_pos>34798</contig_pos>
        <strand></strand>
        <context>agttctaaaa[T/C]ktccttaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGTAGTTCTAAAA</left_flank>
        <right_flank>GTCCTTAAAAATTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTC</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAACCTCGTGATTCTAAAACGTCCTGTCATAACGTTTCGCAACTGACCGTTTCGCAATCATGGGGTTCTACAACAATTGCGCACTATGCGGTTCTAAAATGTCGTAGTTCTGAAATGACCTAGTTGCAAAACTTCGCAGTTATAGAACGCCCGATTTAAAAACATTTAAAGTTACCTAACTCTACTGCGACAAAACCTTTTGGCTCTCGGTCCAAAAAGTTCTAAAACGTCGCAGTTCTAAAATCTCCCATTTTCAGTTCTGATGCGAGAGCCCGTCTCATCGGACAAACGAGATATTCATGCTGGATTCTGTAAAGAAGCTTGTCAACTGCTTCAAGTGGTCGCTGGGAAGAAGATACATTTCGATCATCACGCCAAAGAGATTCGATCATCGGTTAGTTATAGAAAACGTCGCAGTTCTAAAATGTAATAACAAGTCCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAATTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGCAGTTCTAGAACTTCCTTAAAAGTTCAAAAACATCGCAGTTCTAAAATGTCTTCAAAGTTCTAGAACGTCGTAGTTCTAAAATGTCCTCATAAAGTTCTAAAATGTCGCAGTTCTAAAATGTCCTAAAAAGTTCTAAACCGTCCCCTATTCTTCCAGGACAAGTCCCACCGTCAATGGGTCGTCGAGAACACGCCAGTAAGCTTCAACCAAGTCGAACTTCTTCAACTAATCCACGATCATCTCATCAAAAATCAACTGGACAATGTGGCATCACTTCTGAAGACAGAAGCGAAACTTCCCGATCGTCCAGCATCTCGATCCAACAGCACAACGTCGTTCCTCTCGAAACCCTTACCGAGTACCGGCAACAATTTCTCCAAAATCCATGACGTCTTCCCGACGCTCGCTCCGAGAACTCTGGAATCCGAAATCGGAGGAA</canonical>
            <polymorphic>TGAAACCTCGTGATTCTAAAACGTCCTGTCATAACGTTTCGCAACTGACCGTTTCGCAATCATGGGGTTCTACAACAATTGCGCACTATGCGGTTCTAAAATGTCGTAGTTCTGAAATGACCTAGTTGCAAAACTTCGCAGTTATAGAACGCCCGATTTAAAAACATTTAAAGTTACCTAACTCTACTGCGACAAAACCTTTTGGCTCTCGGTCCAAAAAGTTCTAAAACGTCGCAGTTCTAAAATCTCCCATTTTCAGTTCTGATGCGAGAGCCCGTCTCATCGGACAAACGAGATATTCATGCTGGATTCTGTAAAGAAGCTTGTCAACTGCTTCAAGTGGTCGCTGGGAAGAAGATACATTTCGATCATCACGCCAAAGAGATTCGATCATCGGTTAGTTATAGAAAACGTCGCAGTTCTAAAATGTAATAACAAGTCCTGAAACGTCGTAGTTCTAAAAYGTCCTTAAAAGTTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAATTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGCAGTTCTAGAACTTCCTTAAAAGTTCAAAAACATCGCAGTTCTAAAATGTCTTCAAAGTTCTAGAACGTCGTAGTTCTAAAATGTCCTCATAAAGTTCTAAAATGTCGCAGTTCTAAAATGTCCTAAAAAGTTCTAAACCGTCCCCTATTCTTCCAGGACAAGTCCCACCGTCAATGGGTCGTCGAGAACACGCCAGTAAGCTTCAACCAAGTCGAACTTCTTCAACTAATCCACGATCATCTCATCAAAAATCAACTGGACAATGTGGCATCACTTCTGAAGACAGAAGCGAAACTTCCCGATCGTCCAGCATCTCGATCCAACAGCACAACGTCGTTCCTCTCGAAACCCTTACCGAGTACCGGCAACAATTTCTCCAAAATCCATGACGTCTTCCCGACGCTCGCTCCGAGAACTCTGGAATCCGAAATCGGAGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCGATCATCGGTTAGTTATAG</pcr_primer_p1>
		<pcr_primer_p2>GGGACGGTTTAGAACTTTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>ATTCGATCATCGGTTAGTTATAGAAAACGTCGCAGTTCTAAAATGTAATAACAAGTCCTGAAACGTCGTAGTTCTAAAAYGTCCTTAAAAGTTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAATTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGCAGTTCTAGAACTTCCTTAAAAGTTCAAAAACATCGCAGTTCTAAAATGTCTTCAAAGTTCTAGAACGTCGTAGTTCTAAAATGTCCTCATAAAGTTCTAAAATGTCGCAGTTCTAAAATGTCCTAAAAAGTTCTAAACCGTCCC</canonical_amplicon>
		<polymorphic_amplicon>ATTCGATCATCGGTTAGTTATAGAAAACGTCGCAGTTCTAAAATGTAATAACAAGTCCTGAAACGTCGTAGTTCTAAAAYGTCCTTAAAAGTTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAATTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGCAGTTCTAGAACTTCCTTAAAAGTTCAAAAACATCGCAGTTCTAAAATGTCTTCAAAGTTCTAGAACGTCGTAGTTCTAAAATGTCCTCATAAAGTTCTAAAATGTCGCAGTTCTAAAATGTCCTAAAAAGTTCTAAACCGTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25216</snp_id>
        <super_contig>c001001125.Contig1</super_contig>
        <contig_pos>34799</contig_pos>
        <strand></strand>
        <context>gttctaaaay[G/T]tccttaaaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGTAGTTCTAAAAT</left_flank>
        <right_flank>TCCTTAAAAATTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAACCTCGTGATTCTAAAACGTCCTGTCATAACGTTTCGCAACTGACCGTTTCGCAATCATGGGGTTCTACAACAATTGCGCACTATGCGGTTCTAAAATGTCGTAGTTCTGAAATGACCTAGTTGCAAAACTTCGCAGTTATAGAACGCCCGATTTAAAAACATTTAAAGTTACCTAACTCTACTGCGACAAAACCTTTTGGCTCTCGGTCCAAAAAGTTCTAAAACGTCGCAGTTCTAAAATCTCCCATTTTCAGTTCTGATGCGAGAGCCCGTCTCATCGGACAAACGAGATATTCATGCTGGATTCTGTAAAGAAGCTTGTCAACTGCTTCAAGTGGTCGCTGGGAAGAAGATACATTTCGATCATCACGCCAAAGAGATTCGATCATCGGTTAGTTATAGAAAACGTCGCAGTTCTAAAATGTAATAACAAGTCCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAATTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGCAGTTCTAGAACTTCCTTAAAAGTTCAAAAACATCGCAGTTCTAAAATGTCTTCAAAGTTCTAGAACGTCGTAGTTCTAAAATGTCCTCATAAAGTTCTAAAATGTCGCAGTTCTAAAATGTCCTAAAAAGTTCTAAACCGTCCCCTATTCTTCCAGGACAAGTCCCACCGTCAATGGGTCGTCGAGAACACGCCAGTAAGCTTCAACCAAGTCGAACTTCTTCAACTAATCCACGATCATCTCATCAAAAATCAACTGGACAATGTGGCATCACTTCTGAAGACAGAAGCGAAACTTCCCGATCGTCCAGCATCTCGATCCAACAGCACAACGTCGTTCCTCTCGAAACCCTTACCGAGTACCGGCAACAATTTCTCCAAAATCCATGACGTCTTCCCGACGCTCGCTCCGAGAACTCTGGAATCCGAAATCGGAGGAAT</canonical>
            <polymorphic>GAAACCTCGTGATTCTAAAACGTCCTGTCATAACGTTTCGCAACTGACCGTTTCGCAATCATGGGGTTCTACAACAATTGCGCACTATGCGGTTCTAAAATGTCGTAGTTCTGAAATGACCTAGTTGCAAAACTTCGCAGTTATAGAACGCCCGATTTAAAAACATTTAAAGTTACCTAACTCTACTGCGACAAAACCTTTTGGCTCTCGGTCCAAAAAGTTCTAAAACGTCGCAGTTCTAAAATCTCCCATTTTCAGTTCTGATGCGAGAGCCCGTCTCATCGGACAAACGAGATATTCATGCTGGATTCTGTAAAGAAGCTTGTCAACTGCTTCAAGTGGTCGCTGGGAAGAAGATACATTTCGATCATCACGCCAAAGAGATTCGATCATCGGTTAGTTATAGAAAACGTCGCAGTTCTAAAATGTAATAACAAGTCCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGTAGTTCTAAAATKTCCTTAAAAATTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGCAGTTCTAGAACTTCCTTAAAAGTTCAAAAACATCGCAGTTCTAAAATGTCTTCAAAGTTCTAGAACGTCGTAGTTCTAAAATGTCCTCATAAAGTTCTAAAATGTCGCAGTTCTAAAATGTCCTAAAAAGTTCTAAACCGTCCCCTATTCTTCCAGGACAAGTCCCACCGTCAATGGGTCGTCGAGAACACGCCAGTAAGCTTCAACCAAGTCGAACTTCTTCAACTAATCCACGATCATCTCATCAAAAATCAACTGGACAATGTGGCATCACTTCTGAAGACAGAAGCGAAACTTCCCGATCGTCCAGCATCTCGATCCAACAGCACAACGTCGTTCCTCTCGAAACCCTTACCGAGTACCGGCAACAATTTCTCCAAAATCCATGACGTCTTCCCGACGCTCGCTCCGAGAACTCTGGAATCCGAAATCGGAGGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCGATCATCGGTTAGTTATAG</pcr_primer_p1>
		<pcr_primer_p2>GGGACGGTTTAGAACTTTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>ATTCGATCATCGGTTAGTTATAGAAAACGTCGCAGTTCTAAAATGTAATAACAAGTCCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAATTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGCAGTTCTAGAACTTCCTTAAAAGTTCAAAAACATCGCAGTTCTAAAATGTCTTCAAAGTTCTAGAACGTCGTAGTTCTAAAATGTCCTCATAAAGTTCTAAAATGTCGCAGTTCTAAAATGTCCTAAAAAGTTCTAAACCGTCCC</canonical_amplicon>
		<polymorphic_amplicon>ATTCGATCATCGGTTAGTTATAGAAAACGTCGCAGTTCTAAAATGTAATAACAAGTCCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGTAGTTCTAAAATKTCCTTAAAAATTCTGAAACGTCGTAGTTCTAAAATGTCCTTAAAAGTTCTGAAACGTCGCAGTTCTAGAACTTCCTTAAAAGTTCAAAAACATCGCAGTTCTAAAATGTCTTCAAAGTTCTAGAACGTCGTAGTTCTAAAATGTCCTCATAAAGTTCTAAAATGTCGCAGTTCTAAAATGTCCTAAAAAGTTCTAAACCGTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25217</snp_id>
        <super_contig>c001001275.Contig1</super_contig>
        <contig_pos>38720</contig_pos>
        <strand>+</strand>
        <context>TCTGAAAACC[G/T]GAATTTCTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATATAAGACGGTAGAAATTTGAAGAATTTTTTTCCTCATTTCTGAAAACC</left_flank>
        <right_flank>GAATTTCTCAAATTTTATGTAGAAAAAGAACAGAGTTAATAGAAAGAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTCTCATCTTCTTCTTCTGTTTCTCATCACTGGCTTGGTATTTTTACAAGAAAACGAATTGTGGTGAGTGATCGATCTGCACTTTATAAACTGTATTTCCTCTGCTAGGCACTTCTTCTTACATTGTTTAAAGGAGGGAGAGAAGAGGGTTTTTCGGAGTTACGGTATGCATTTTCACCTGATGGTGCACAGTGATTAGTGTGATTAGCCCATATATCTCATTTCCTATGGTATCAAAAAGTGGTCAACTTATAAACTATTTATCATAATATCAAAAACATTTTGTCCGTCTGAACTTTCCTGATATCTTTCACGGAAATTGAGATGATTGAGCTCAAAGCGCAAAAATAGGGTGGCTTTCTATGAGAGTGTTTACTCTAGGTTCCCCAAGTTTAACTATTTAAGATTTTTTCCAGATATCCTCCCCCACGATCACACGGAATCAATATAAGACGGTAGAAATTTGAAGAATTTTTTTCCTCATTTCTGAAAACCTGAATTTCTCAAATTTTATGTAGAAAAAGAACAGAGTTAATAGAAAGAACAAAAGTTTTTCGAAAAGTTTGTCTGTTCCACAGATTTCGTCCAGTTTCGTTCCAAAAAAAATTTAGTGTTGTCTTGCCTTTTTACAATTCAGAAATTTTCTGTATGAATATTCCAGAAATTAGTCAAAGTTATAGAAAATGTTTATTTGATGGATCTGAAAATGATCTTGAACAAAAAATAGGTGGACAAATTAAAATTGGACAGTGTGGACAGTTGGGACAGTAGTTTGCTCAAATCCGGGCGACAACCAATCTTCCTGCATTTTGAACTTCTTGATGCTCTGTGCCTTCTTTTCTTCTACAGGCACAGGTCCTGGGCGATGATGCGCATAAAGGACCCGATCCATATGCGATCCTCTAGAAGTCCGTTTGACACATATCGCGAACAACGAGCTGCGATGAGTCTCATATGTGTGCGATGCGGAAGAGGCTGAATCGAGTGTTCCGAATG</canonical>
            <polymorphic>ATTTTTCTCATCTTCTTCTTCTGTTTCTCATCACTGGCTTGGTATTTTTACAAGAAAACGAATTGTGGTGAGTGATCGATCTGCACTTTATAAACTGTATTTCCTCTGCTAGGCACTTCTTCTTACATTGTTTAAAGGAGGGAGAGAAGAGGGTTTTTCGGAGTTACGGTATGCATTTTCACCTGATGGTGCACAGTGATTAGTGTGATTAGCCCATATATCTCATTTCCTATGGTATCAAAAAGTGGTCAACTTATAAACTATTTATCATAATATCAAAAACATTTTGTCCGTCTGAACTTTCCTGATATCTTTCACGGAAATTGAGATGATTGAGCTCAAAGCGCAAAAATAGGGTGGCTTTCTATGAGAGTGTTTACTCTAGGTTCCCCAAGTTTAACTATTTAAGATTTTTTCCAGATATCCTCCCCCACGATCACACGGAATCAATATAAGACGGTAGAAATTTGAAGAATTTTTTTCCTCATTTCTGAAAACCKGAATTTCTCAAATTTTATGTAGAAAAAGAACAGAGTTAATAGAAAGAACAAAAGTTTTTCGAAAAGTTTGTCTGTTCCACAGATTTCGTCCAGTTTCGTTCCAAAAAAAATTTAGTGTTGTCTTGCCTTTTTACAATTCAGAAATTTTCTGTATGAATATTCCAGAAATTAGTCAAAGTTATAGAAAATGTTTATTTGATGGATCTGAAAATGATCTTGAACAAAAAATAGGTGGACAAATTAAAATTGGACAGTGTGGACAGTTGGGACAGTAGTTTGCTCAAATCCGGGCGACAACCAATCTTCCTGCATTTTGAACTTCTTGATGCTCTGTGCCTTCTTTTCTTCTACAGGCACAGGTCCTGGGCGATGATGCGCATAAAGGACCCGATCCATATGCGATCCTCTAGAAGTCCGTTTGACACATATCGCGAACAACGAGCTGCGATGAGTCTCATATGTGTGCGATGCGGAAGAGGCTGAATCGAGTGTTCCGAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGGTTCCCCAAGTTTAACTATT</pcr_primer_p1>
		<pcr_primer_p2>GTAAAAAGGCAAGACAACACTAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAGGTTCCCCAAGTTTAACTATTTAAGATTTTTTCCAGATATCCTCCCCCACGATCACACGGAATCAATATAAGACGGTAGAAATTTGAAGAATTTTTTTCCTCATTTCTGAAAACCTGAATTTCTCAAATTTTATGTAGAAAAAGAACAGAGTTAATAGAAAGAACAAAAGTTTTTCGAAAAGTTTGTCTGTTCCACAGATTTCGTCCAGTTTCGTTCCAAAAAAAATTTAGTGTTGTCTTGCCTTTTTAC</canonical_amplicon>
		<polymorphic_amplicon>TAGGTTCCCCAAGTTTAACTATTTAAGATTTTTTCCAGATATCCTCCCCCACGATCACACGGAATCAATATAAGACGGTAGAAATTTGAAGAATTTTTTTCCTCATTTCTGAAAACCKGAATTTCTCAAATTTTATGTAGAAAAAGAACAGAGTTAATAGAAAGAACAAAAGTTTTTCGAAAAGTTTGTCTGTTCCACAGATTTCGTCCAGTTTCGTTCCAAAAAAAATTTAGTGTTGTCTTGCCTTTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25218</snp_id>
        <super_contig>c001001275.Contig1</super_contig>
        <contig_pos>38775</contig_pos>
        <strand>+</strand>
        <context>AGAACAAAAG[G/T]WTTTCGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCTCAAATTTTATGTAGAAAAAGAACAGAGTTAATAGAAAGAACAAAAG</left_flank>
        <right_flank>TTTTCGAAAAGTTTGTCTGTTCCACAGATTTCGTCCAGTTTCGTTCCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACGAATTGTGGTGAGTGATCGATCTGCACTTTATAAACTGTATTTCCTCTGCTAGGCACTTCTTCTTACATTGTTTAAAGGAGGGAGAGAAGAGGGTTTTTCGGAGTTACGGTATGCATTTTCACCTGATGGTGCACAGTGATTAGTGTGATTAGCCCATATATCTCATTTCCTATGGTATCAAAAAGTGGTCAACTTATAAACTATTTATCATAATATCAAAAACATTTTGTCCGTCTGAACTTTCCTGATATCTTTCACGGAAATTGAGATGATTGAGCTCAAAGCGCAAAAATAGGGTGGCTTTCTATGAGAGTGTTTACTCTAGGTTCCCCAAGTTTAACTATTTAAGATTTTTTCCAGATATCCTCCCCCACGATCACACGGAATCAATATAAGACGGTAGAAATTTGAAGAATTTTTTTCCTCATTTCTGAAAACCTGAATTTCTCAAATTTTATGTAGAAAAAGAACAGAGTTAATAGAAAGAACAAAAGTTTTTCGAAAAGTTTGTCTGTTCCACAGATTTCGTCCAGTTTCGTTCCAAAAAAAATTTAGTGTTGTCTTGCCTTTTTACAATTCAGAAATTTTCTGTATGAATATTCCAGAAATTAGTCAAAGTTATAGAAAATGTTTATTTGATGGATCTGAAAATGATCTTGAACAAAAAATAGGTGGACAAATTAAAATTGGACAGTGTGGACAGTTGGGACAGTAGTTTGCTCAAATCCGGGCGACAACCAATCTTCCTGCATTTTGAACTTCTTGATGCTCTGTGCCTTCTTTTCTTCTACAGGCACAGGTCCTGGGCGATGATGCGCATAAAGGACCCGATCCATATGCGATCCTCTAGAAGTCCGTTTGACACATATCGCGAACAACGAGCTGCGATGAGTCTCATATGTGTGCGATGCGGAAGAGGCTGAATCGAGTGTTCCGAATGCGCACGTATCCTAGATGGATTCTAGGTGGGTGGGCGATGTGTGCGATATGGGTCT</canonical>
            <polymorphic>AAACGAATTGTGGTGAGTGATCGATCTGCACTTTATAAACTGTATTTCCTCTGCTAGGCACTTCTTCTTACATTGTTTAAAGGAGGGAGAGAAGAGGGTTTTTCGGAGTTACGGTATGCATTTTCACCTGATGGTGCACAGTGATTAGTGTGATTAGCCCATATATCTCATTTCCTATGGTATCAAAAAGTGGTCAACTTATAAACTATTTATCATAATATCAAAAACATTTTGTCCGTCTGAACTTTCCTGATATCTTTCACGGAAATTGAGATGATTGAGCTCAAAGCGCAAAAATAGGGTGGCTTTCTATGAGAGTGTTTACTCTAGGTTCCCCAAGTTTAACTATTTAAGATTTTTTCCAGATATCCTCCCCCACGATCACACGGAATCAATATAAGACGGTAGAAATTTGAAGAATTTTTTTCCTCATTTCTGAAAACCTGAATTTCTCAAATTTTATGTAGAAAAAGAACAGAGTTAATAGAAAGAACAAAAGKTTTTCGAAAAGTTTGTCTGTTCCACAGATTTCGTCCAGTTTCGTTCCAAAAAAAATTTAGTGTTGTCTTGCCTTTTTACAATTCAGAAATTTTCTGTATGAATATTCCAGAAATTAGTCAAAGTTATAGAAAATGTTTATTTGATGGATCTGAAAATGATCTTGAACAAAAAATAGGTGGACAAATTAAAATTGGACAGTGTGGACAGTTGGGACAGTAGTTTGCTCAAATCCGGGCGACAACCAATCTTCCTGCATTTTGAACTTCTTGATGCTCTGTGCCTTCTTTTCTTCTACAGGCACAGGTCCTGGGCGATGATGCGCATAAAGGACCCGATCCATATGCGATCCTCTAGAAGTCCGTTTGACACATATCGCGAACAACGAGCTGCGATGAGTCTCATATGTGTGCGATGCGGAAGAGGCTGAATCGAGTGTTCCGAATGCGCACGTATCCTAGATGGATTCTAGGTGGGTGGGCGATGTGTGCGATATGGGTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGGTTCCCCAAGTTTAACTATT</pcr_primer_p1>
		<pcr_primer_p2>GTAAAAAGGCAAGACAACACTAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAGGTTCCCCAAGTTTAACTATTTAAGATTTTTTCCAGATATCCTCCCCCACGATCACACGGAATCAATATAAGACGGTAGAAATTTGAAGAATTTTTTTCCTCATTTCTGAAAACCTGAATTTCTCAAATTTTATGTAGAAAAAGAACAGAGTTAATAGAAAGAACAAAAGTTTTTCGAAAAGTTTGTCTGTTCCACAGATTTCGTCCAGTTTCGTTCCAAAAAAAATTTAGTGTTGTCTTGCCTTTTTAC</canonical_amplicon>
		<polymorphic_amplicon>TAGGTTCCCCAAGTTTAACTATTTAAGATTTTTTCCAGATATCCTCCCCCACGATCACACGGAATCAATATAAGACGGTAGAAATTTGAAGAATTTTTTTCCTCATTTCTGAAAACCTGAATTTCTCAAATTTTATGTAGAAAAAGAACAGAGTTAATAGAAAGAACAAAAGKTTTTCGAAAAGTTTGTCTGTTCCACAGATTTCGTCCAGTTTCGTTCCAAAAAAAATTTAGTGTTGTCTTGCCTTTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25219</snp_id>
        <super_contig>c001001275.Contig1</super_contig>
        <contig_pos>38776</contig_pos>
        <strand>+</strand>
        <context>GAACAAAAGK[A/T]TTTCGAAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTCAAATTTTATGTAGAAAAAGAACAGAGTTAATAGAAAGAACAAAAGT</left_flank>
        <right_flank>TTTCGAAAAGTTTGTCTGTTCCACAGATTTCGTCCAGTTTCGTTCCAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGAATTGTGGTGAGTGATCGATCTGCACTTTATAAACTGTATTTCCTCTGCTAGGCACTTCTTCTTACATTGTTTAAAGGAGGGAGAGAAGAGGGTTTTTCGGAGTTACGGTATGCATTTTCACCTGATGGTGCACAGTGATTAGTGTGATTAGCCCATATATCTCATTTCCTATGGTATCAAAAAGTGGTCAACTTATAAACTATTTATCATAATATCAAAAACATTTTGTCCGTCTGAACTTTCCTGATATCTTTCACGGAAATTGAGATGATTGAGCTCAAAGCGCAAAAATAGGGTGGCTTTCTATGAGAGTGTTTACTCTAGGTTCCCCAAGTTTAACTATTTAAGATTTTTTCCAGATATCCTCCCCCACGATCACACGGAATCAATATAAGACGGTAGAAATTTGAAGAATTTTTTTCCTCATTTCTGAAAACCTGAATTTCTCAAATTTTATGTAGAAAAAGAACAGAGTTAATAGAAAGAACAAAAGTTTTTCGAAAAGTTTGTCTGTTCCACAGATTTCGTCCAGTTTCGTTCCAAAAAAAATTTAGTGTTGTCTTGCCTTTTTACAATTCAGAAATTTTCTGTATGAATATTCCAGAAATTAGTCAAAGTTATAGAAAATGTTTATTTGATGGATCTGAAAATGATCTTGAACAAAAAATAGGTGGACAAATTAAAATTGGACAGTGTGGACAGTTGGGACAGTAGTTTGCTCAAATCCGGGCGACAACCAATCTTCCTGCATTTTGAACTTCTTGATGCTCTGTGCCTTCTTTTCTTCTACAGGCACAGGTCCTGGGCGATGATGCGCATAAAGGACCCGATCCATATGCGATCCTCTAGAAGTCCGTTTGACACATATCGCGAACAACGAGCTGCGATGAGTCTCATATGTGTGCGATGCGGAAGAGGCTGAATCGAGTGTTCCGAATGCGCACGTATCCTAGATGGATTCTAGGTGGGTGGGCGATGTGTGCGATATGGGTCTG</canonical>
            <polymorphic>AACGAATTGTGGTGAGTGATCGATCTGCACTTTATAAACTGTATTTCCTCTGCTAGGCACTTCTTCTTACATTGTTTAAAGGAGGGAGAGAAGAGGGTTTTTCGGAGTTACGGTATGCATTTTCACCTGATGGTGCACAGTGATTAGTGTGATTAGCCCATATATCTCATTTCCTATGGTATCAAAAAGTGGTCAACTTATAAACTATTTATCATAATATCAAAAACATTTTGTCCGTCTGAACTTTCCTGATATCTTTCACGGAAATTGAGATGATTGAGCTCAAAGCGCAAAAATAGGGTGGCTTTCTATGAGAGTGTTTACTCTAGGTTCCCCAAGTTTAACTATTTAAGATTTTTTCCAGATATCCTCCCCCACGATCACACGGAATCAATATAAGACGGTAGAAATTTGAAGAATTTTTTTCCTCATTTCTGAAAACCTGAATTTCTCAAATTTTATGTAGAAAAAGAACAGAGTTAATAGAAAGAACAAAAGTWTTTCGAAAAGTTTGTCTGTTCCACAGATTTCGTCCAGTTTCGTTCCAAAAAAAATTTAGTGTTGTCTTGCCTTTTTACAATTCAGAAATTTTCTGTATGAATATTCCAGAAATTAGTCAAAGTTATAGAAAATGTTTATTTGATGGATCTGAAAATGATCTTGAACAAAAAATAGGTGGACAAATTAAAATTGGACAGTGTGGACAGTTGGGACAGTAGTTTGCTCAAATCCGGGCGACAACCAATCTTCCTGCATTTTGAACTTCTTGATGCTCTGTGCCTTCTTTTCTTCTACAGGCACAGGTCCTGGGCGATGATGCGCATAAAGGACCCGATCCATATGCGATCCTCTAGAAGTCCGTTTGACACATATCGCGAACAACGAGCTGCGATGAGTCTCATATGTGTGCGATGCGGAAGAGGCTGAATCGAGTGTTCCGAATGCGCACGTATCCTAGATGGATTCTAGGTGGGTGGGCGATGTGTGCGATATGGGTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGGTTCCCCAAGTTTAACTATT</pcr_primer_p1>
		<pcr_primer_p2>GTAAAAAGGCAAGACAACACTAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAGGTTCCCCAAGTTTAACTATTTAAGATTTTTTCCAGATATCCTCCCCCACGATCACACGGAATCAATATAAGACGGTAGAAATTTGAAGAATTTTTTTCCTCATTTCTGAAAACCTGAATTTCTCAAATTTTATGTAGAAAAAGAACAGAGTTAATAGAAAGAACAAAAGTTTTTCGAAAAGTTTGTCTGTTCCACAGATTTCGTCCAGTTTCGTTCCAAAAAAAATTTAGTGTTGTCTTGCCTTTTTAC</canonical_amplicon>
		<polymorphic_amplicon>TAGGTTCCCCAAGTTTAACTATTTAAGATTTTTTCCAGATATCCTCCCCCACGATCACACGGAATCAATATAAGACGGTAGAAATTTGAAGAATTTTTTTCCTCATTTCTGAAAACCTGAATTTCTCAAATTTTATGTAGAAAAAGAACAGAGTTAATAGAAAGAACAAAAGTWTTTCGAAAAGTTTGTCTGTTCCACAGATTTCGTCCAGTTTCGTTCCAAAAAAAATTTAGTGTTGTCTTGCCTTTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25220</snp_id>
        <super_contig>c001001275.Contig1</super_contig>
        <contig_pos>38823</contig_pos>
        <strand>+</strand>
        <context>GTTTCGTTCC[A/T]AAAAAAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTTTTTCGAAAAGTTTGTCTGTTCCACAGATTTCGTCCAGTTTCGTTCC</left_flank>
        <right_flank>AAAAAAATTTAGTGTTGTCTTGCCTTTTTACAATTCAGAAATTTTCTGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTGCTAGGCACTTCTTCTTACATTGTTTAAAGGAGGGAGAGAAGAGGGTTTTTCGGAGTTACGGTATGCATTTTCACCTGATGGTGCACAGTGATTAGTGTGATTAGCCCATATATCTCATTTCCTATGGTATCAAAAAGTGGTCAACTTATAAACTATTTATCATAATATCAAAAACATTTTGTCCGTCTGAACTTTCCTGATATCTTTCACGGAAATTGAGATGATTGAGCTCAAAGCGCAAAAATAGGGTGGCTTTCTATGAGAGTGTTTACTCTAGGTTCCCCAAGTTTAACTATTTAAGATTTTTTCCAGATATCCTCCCCCACGATCACACGGAATCAATATAAGACGGTAGAAATTTGAAGAATTTTTTTCCTCATTTCTGAAAACCTGAATTTCTCAAATTTTATGTAGAAAAAGAACAGAGTTAATAGAAAGAACAAAAGTTTTTCGAAAAGTTTGTCTGTTCCACAGATTTCGTCCAGTTTCGTTCCAAAAAAAATTTAGTGTTGTCTTGCCTTTTTACAATTCAGAAATTTTCTGTATGAATATTCCAGAAATTAGTCAAAGTTATAGAAAATGTTTATTTGATGGATCTGAAAATGATCTTGAACAAAAAATAGGTGGACAAATTAAAATTGGACAGTGTGGACAGTTGGGACAGTAGTTTGCTCAAATCCGGGCGACAACCAATCTTCCTGCATTTTGAACTTCTTGATGCTCTGTGCCTTCTTTTCTTCTACAGGCACAGGTCCTGGGCGATGATGCGCATAAAGGACCCGATCCATATGCGATCCTCTAGAAGTCCGTTTGACACATATCGCGAACAACGAGCTGCGATGAGTCTCATATGTGTGCGATGCGGAAGAGGCTGAATCGAGTGTTCCGAATGCGCACGTATCCTAGATGGATTCTAGGTGGGTGGGCGATGTGTGCGATATGGGTCTGATACGGTAGGCCGACTACAACACTCCGAAATCCCTGATACGCGCATT</canonical>
            <polymorphic>CTCTGCTAGGCACTTCTTCTTACATTGTTTAAAGGAGGGAGAGAAGAGGGTTTTTCGGAGTTACGGTATGCATTTTCACCTGATGGTGCACAGTGATTAGTGTGATTAGCCCATATATCTCATTTCCTATGGTATCAAAAAGTGGTCAACTTATAAACTATTTATCATAATATCAAAAACATTTTGTCCGTCTGAACTTTCCTGATATCTTTCACGGAAATTGAGATGATTGAGCTCAAAGCGCAAAAATAGGGTGGCTTTCTATGAGAGTGTTTACTCTAGGTTCCCCAAGTTTAACTATTTAAGATTTTTTCCAGATATCCTCCCCCACGATCACACGGAATCAATATAAGACGGTAGAAATTTGAAGAATTTTTTTCCTCATTTCTGAAAACCTGAATTTCTCAAATTTTATGTAGAAAAAGAACAGAGTTAATAGAAAGAACAAAAGTTTTTCGAAAAGTTTGTCTGTTCCACAGATTTCGTCCAGTTTCGTTCCWAAAAAAATTTAGTGTTGTCTTGCCTTTTTACAATTCAGAAATTTTCTGTATGAATATTCCAGAAATTAGTCAAAGTTATAGAAAATGTTTATTTGATGGATCTGAAAATGATCTTGAACAAAAAATAGGTGGACAAATTAAAATTGGACAGTGTGGACAGTTGGGACAGTAGTTTGCTCAAATCCGGGCGACAACCAATCTTCCTGCATTTTGAACTTCTTGATGCTCTGTGCCTTCTTTTCTTCTACAGGCACAGGTCCTGGGCGATGATGCGCATAAAGGACCCGATCCATATGCGATCCTCTAGAAGTCCGTTTGACACATATCGCGAACAACGAGCTGCGATGAGTCTCATATGTGTGCGATGCGGAAGAGGCTGAATCGAGTGTTCCGAATGCGCACGTATCCTAGATGGATTCTAGGTGGGTGGGCGATGTGTGCGATATGGGTCTGATACGGTAGGCCGACTACAACACTCCGAAATCCCTGATACGCGCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGACGGTAGAAATTTGAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TTCAGATCCATCAAATAAACATT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AAGACGGTAGAAATTTGAAGAATTTTTTTCCTCATTTCTGAAAACCTGAATTTCTCAAATTTTATGTAGAAAAAGAACAGAGTTAATAGAAAGAACAAAAGTTTTTCGAAAAGTTTGTCTGTTCCACAGATTTCGTCCAGTTTCGTTCCAAAAAAAATTTAGTGTTGTCTTGCCTTTTTACAATTCAGAAATTTTCTGTATGAATATTCCAGAAATTAGTCAAAGTTATAGAAAATGTTTATTTGATGGATCTGAA</canonical_amplicon>
		<polymorphic_amplicon>AAGACGGTAGAAATTTGAAGAATTTTTTTCCTCATTTCTGAAAACCTGAATTTCTCAAATTTTATGTAGAAAAAGAACAGAGTTAATAGAAAGAACAAAAGTTTTTCGAAAAGTTTGTCTGTTCCACAGATTTCGTCCAGTTTCGTTCCWAAAAAAATTTAGTGTTGTCTTGCCTTTTTACAATTCAGAAATTTTCTGTATGAATATTCCAGAAATTAGTCAAAGTTATAGAAAATGTTTATTTGATGGATCTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25221</snp_id>
        <super_contig>c001001275.Contig1</super_contig>
        <contig_pos>39012</contig_pos>
        <strand>+</strand>
        <context>CAAATCCGGG[C/T]GACAACCAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAATTGGACAGTGTGGACAGTTGGGACAGTAGTTTGCTCAAATCCGGG</left_flank>
        <right_flank>GACAACCAATCTTCCTGCATTTTGAACTTCTTGATGCTCTGTGCCTTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTGAACTTTCCTGATATCTTTCACGGAAATTGAGATGATTGAGCTCAAAGCGCAAAAATAGGGTGGCTTTCTATGAGAGTGTTTACTCTAGGTTCCCCAAGTTTAACTATTTAAGATTTTTTCCAGATATCCTCCCCCACGATCACACGGAATCAATATAAGACGGTAGAAATTTGAAGAATTTTTTTCCTCATTTCTGAAAACCTGAATTTCTCAAATTTTATGTAGAAAAAGAACAGAGTTAATAGAAAGAACAAAAGTTTTTCGAAAAGTTTGTCTGTTCCACAGATTTCGTCCAGTTTCGTTCCAAAAAAAATTTAGTGTTGTCTTGCCTTTTTACAATTCAGAAATTTTCTGTATGAATATTCCAGAAATTAGTCAAAGTTATAGAAAATGTTTATTTGATGGATCTGAAAATGATCTTGAACAAAAAATAGGTGGACAAATTAAAATTGGACAGTGTGGACAGTTGGGACAGTAGTTTGCTCAAATCCGGGCGACAACCAATCTTCCTGCATTTTGAACTTCTTGATGCTCTGTGCCTTCTTTTCTTCTACAGGCACAGGTCCTGGGCGATGATGCGCATAAAGGACCCGATCCATATGCGATCCTCTAGAAGTCCGTTTGACACATATCGCGAACAACGAGCTGCGATGAGTCTCATATGTGTGCGATGCGGAAGAGGCTGAATCGAGTGTTCCGAATGCGCACGTATCCTAGATGGATTCTAGGTGGGTGGGCGATGTGTGCGATATGGGTCTGATACGGTAGGCCGACTACAACACTCCGAAATCCCTGATACGCGCATTGTTTACCGTAAATCCACACCGGCAACTTTGTCAATTTTTCGTCAATTCGAGCCTACATTTCTGGTTTTTCGATTATTCTTTTTTTTTTTTTGTGAAAAAGAGTTATGGCAGACTAAAAAATCGCTGAATTCTTGCAGAAACATGTCTTTCACTCGTCAATTGCTATGTTTTTCGCCAAAATAGGTGATA</canonical>
            <polymorphic>GTCTGAACTTTCCTGATATCTTTCACGGAAATTGAGATGATTGAGCTCAAAGCGCAAAAATAGGGTGGCTTTCTATGAGAGTGTTTACTCTAGGTTCCCCAAGTTTAACTATTTAAGATTTTTTCCAGATATCCTCCCCCACGATCACACGGAATCAATATAAGACGGTAGAAATTTGAAGAATTTTTTTCCTCATTTCTGAAAACCTGAATTTCTCAAATTTTATGTAGAAAAAGAACAGAGTTAATAGAAAGAACAAAAGTTTTTCGAAAAGTTTGTCTGTTCCACAGATTTCGTCCAGTTTCGTTCCAAAAAAAATTTAGTGTTGTCTTGCCTTTTTACAATTCAGAAATTTTCTGTATGAATATTCCAGAAATTAGTCAAAGTTATAGAAAATGTTTATTTGATGGATCTGAAAATGATCTTGAACAAAAAATAGGTGGACAAATTAAAATTGGACAGTGTGGACAGTTGGGACAGTAGTTTGCTCAAATCCGGGYGACAACCAATCTTCCTGCATTTTGAACTTCTTGATGCTCTGTGCCTTCTTTTCTTCTACAGGCACAGGTCCTGGGCGATGATGCGCATAAAGGACCCGATCCATATGCGATCCTCTAGAAGTCCGTTTGACACATATCGCGAACAACGAGCTGCGATGAGTCTCATATGTGTGCGATGCGGAAGAGGCTGAATCGAGTGTTCCGAATGCGCACGTATCCTAGATGGATTCTAGGTGGGTGGGCGATGTGTGCGATATGGGTCTGATACGGTAGGCCGACTACAACACTCCGAAATCCCTGATACGCGCATTGTTTACCGTAAATCCACACCGGCAACTTTGTCAATTTTTCGTCAATTCGAGCCTACATTTCTGGTTTTTCGATTATTCTTTTTTTTTTTTTGTGAAAAAGAGTTATGGCAGACTAAAAAATCGCTGAATTCTTGCAGAAACATGTCTTTCACTCGTCAATTGCTATGTTTTTCGCCAAAATAGGTGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATGTTTATTTGATGGATCTG</pcr_primer_p1>
		<pcr_primer_p2>GATATGTGTCAAACGGACTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAATGTTTATTTGATGGATCTGAAAATGATCTTGAACAAAAAATAGGTGGACAAATTAAAATTGGACAGTGTGGACAGTTGGGACAGTAGTTTGCTCAAATCCGGGCGACAACCAATCTTCCTGCATTTTGAACTTCTTGATGCTCTGTGCCTTCTTTTCTTCTACAGGCACAGGTCCTGGGCGATGATGCGCATAAAGGACCCGATCCATATGCGATCCTCTAGAAGTCCGTTTGACACATATC</canonical_amplicon>
		<polymorphic_amplicon>AAAATGTTTATTTGATGGATCTGAAAATGATCTTGAACAAAAAATAGGTGGACAAATTAAAATTGGACAGTGTGGACAGTTGGGACAGTAGTTTGCTCAAATCCGGGYGACAACCAATCTTCCTGCATTTTGAACTTCTTGATGCTCTGTGCCTTCTTTTCTTCTACAGGCACAGGTCCTGGGCGATGATGCGCATAAAGGACCCGATCCATATGCGATCCTCTAGAAGTCCGTTTGACACATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25222</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>70095</contig_pos>
        <strand>+</strand>
        <context>CATTTATTTT[C/G]AATTGCTCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAGAGTGGGGGGATAGAAGGAAAATGAAGTAGGACAGGTACATTTATTTT</left_flank>
        <right_flank>AATTGCTCTTTTCTTTTGAATCGAAAAAAAGTTGAAATTTGAAAAGTGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTACTACACCGAAAAGTAAATATATCAAAAGTGCTATTAACCATTTTGAATATTGTCCAGTATCATCGAACTTCCGTCTCATTTTTGTCGCATCTGTAAAAAATGGGAAGTGTGTAGAAGAGCAAGAAGAAAAGGTCCACAAATAGGGGGAGTTCCATTAAAAAGGCGAAAAAAGGCAAAAAGGAGGAGTAGGAGGCACAAATCGGAAGATAAAGCCAACATGGCAGAGGAGAAACGAGGTCATGAATAATTAATAGCTGGAATTGGAATATGTTGAAAAAGTACTTCAAAAAGGTTCTAGTTTTTGTAGATCCTCGATCCTATGAGAAAGTGTAGAAGGAAAAAGAAGAACATCGGAAAAGGTGGAAGAGAAAAAATAGAAGGAATTTCAGGAGCACAAAAAAAGGAAAAGAGAGGGAGGCGCCAATTTGAATGGACATTTTTGGGGTAGAGTGGGGGGATAGAAGGAAAATGAAGTAGGACAGGTACATTTATTTTCAATTGCTCTTTTCTTTTGAATCGAAAAAAAGTTGAAATTTGAAAAGTGCGGATTTATTAAATTTTTTGATAATTCTCTTAAAATGTGATGTAGTTAAACTACTAGAAAATCAGGATGACGAAATTTAATATTTCAAAACTTGACTCATTCACAACTACACTGTTATTATGAACTTTCCTTTTATTTGCAGTTGGAAGGTAATGTCTGCAGTATTCAGTATTTTGAATTTTCATTATTTTCAAACGGGTATCAAATTCCAAAATGAAGCACCGCAATGGGGTGGTTTTGCATAACAATTGCAATGAATCCGTAGCTCTATAAATAGTAAACGAAAAGAAGATGAGAATATCGTGGCACTCGACGATCAGTCTCCAGGAACAATGCTTCAAGAAATAGAAGAAACTGAATAGATGATTGGAAGACACGGAAGGATTCTGGCGAAAGTCTGTAGACGGACATAGAGGGAGTCAGATTAATAATGAGCTGCAGGGAAGAAGTTG</canonical>
            <polymorphic>TCTACTACACCGAAAAGTAAATATATCAAAAGTGCTATTAACCATTTTGAATATTGTCCAGTATCATCGAACTTCCGTCTCATTTTTGTCGCATCTGTAAAAAATGGGAAGTGTGTAGAAGAGCAAGAAGAAAAGGTCCACAAATAGGGGGAGTTCCATTAAAAAGGCGAAAAAAGGCAAAAAGGAGGAGTAGGAGGCACAAATCGGAAGATAAAGCCAACATGGCAGAGGAGAAACGAGGTCATGAATAATTAATAGCTGGAATTGGAATATGTTGAAAAAGTACTTCAAAAAGGTTCTAGTTTTTGTAGATCCTCGATCCTATGAGAAAGTGTAGAAGGAAAAAGAAGAACATCGGAAAAGGTGGAAGAGAAAAAATAGAAGGAATTTCAGGAGCACAAAAAAAGGAAAAGAGAGGGAGGCGCCAATTTGAATGGACATTTTTGGGGTAGAGTGGGGGGATAGAAGGAAAATGAAGTAGGACAGGTACATTTATTTTSAATTGCTCTTTTCTTTTGAATCGAAAAAAAGTTGAAATTTGAAAAGTGCGGATTTATTAAATTTTTTGATAATTCTCTTAAAATGTGATGTAGTTAAACTACTAGAAAATCAGGATGACGAAATTTAATATTTCAAAACTTGACTCATTCACAACTACACTGTTATTATGAACTTTCCTTTTATTTGCAGTTGGAAGGTAATGTCTGCAGTATTCAGTATTTTGAATTTTCATTATTTTCAAACGGGTATCAAATTCCAAAATGAAGCACCGCAATGGGGTGGTTTTGCATAACAATTGCAATGAATCCGTAGCTCTATAAATAGTAAACGAAAAGAAGATGAGAATATCGTGGCACTCGACGATCAGTCTCCAGGAACAATGCTTCAAGAAATAGAAGAAACTGAATAGATGATTGGAAGACACGGAAGGATTCTGGCGAAAGTCTGTAGACGGACATAGAGGGAGTCAGATTAATAATGAGCTGCAGGGAAGAAGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>500 294 206</canonical_bands>
                <polymorphic_bands>794 206</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGATCCTCGATCCTATGAGA</pcr_primer_p1>
		<pcr_primer_p2>ATAAATCCGCACTTTTCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAGATCCTCGATCCTATGAGAAAGTGTAGAAGGAAAAAGAAGAACATCGGAAAAGGTGGAAGAGAAAAAATAGAAGGAATTTCAGGAGCACAAAAAAAGGAAAAGAGAGGGAGGCGCCAATTTGAATGGACATTTTTGGGGTAGAGTGGGGGGATAGAAGGAAAATGAAGTAGGACAGGTACATTTATTTTCAATTGCTCTTTTCTTTTGAATCGAAAAAAAGTTGAAATTTGAAAAGTGCGGATTTAT</canonical_amplicon>
		<polymorphic_amplicon>GTAGATCCTCGATCCTATGAGAAAGTGTAGAAGGAAAAAGAAGAACATCGGAAAAGGTGGAAGAGAAAAAATAGAAGGAATTTCAGGAGCACAAAAAAAGGAAAAGAGAGGGAGGCGCCAATTTGAATGGACATTTTTGGGGTAGAGTGGGGGGATAGAAGGAAAATGAAGTAGGACAGGTACATTTATTTTSAATTGCTCTTTTCTTTTGAATCGAAAAAAAGTTGAAATTTGAAAAGTGCGGATTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25223</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>111991</contig_pos>
        <strand></strand>
        <context>CTCCCTGCAC[T/G]TCACAATCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATTCCTTCACGTTCGTACCCGCTAACCATACGACTACGCACTCCCTGCAC</left_flank>
        <right_flank>TCACAATCAGTATGCATTCTTATATGGGTAGGCAGTAAAACATTATTGAT</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTGTTGCGTTTGCATAAATTTGTTGGAACATCTTGTTCACCGCAGCATCTCCTTCCAATTTCTCCTCTTCTTCATCCTTGACTGCTTGTTTCTCAATCGCGTCCCAGTTCTTTTTCACGTTGGAAATAGGAGTTGTACTCGGGATAAACTCCGTTGGCGAAGTGGTTGGTGCAGAGGCAGCGATACCTTGTCCATCGCTTAGAAGAGAATTCCAGCGGGAGAACCGGGCACTTTTCGGGAGGCGAATTTCAATCTGAAATGAACTTGGAAGTAGACAAAAAAAAGTGCTTAAAAGTAATTATTTTAGTTTTGTTGACAGTCAGACCACATGTATCGCTTTTGAGGGAATGATCATCACGGTTGTGAAAAACCGCTAACACTCGGCTTATTGTCACTCAGCGAGTGACTCATCATCCTGTCTTCTAAACGGGAAACGAACCAGTCTTGATTCCTTCACGTTCGTACCCGCTAACCATACGACTACGCACTCCCTGCACTTCACAATCAGTATGCATTCTTATATGGGTAGGCAGTAAAACATTATTGATTGCGTTTCAGTTGAAAACAAACCTTGGCAGGTGTGCACTTGACGGTGACATCTTCACTAGTGACTTGGCCGAACAGTTCTCCGTCGAAAAGAACGTCTTCTAACTGATTCACTGTCAGGTGGTTATCATCCGAGATAATAACTTTGCAATCCTCTAATGGCACACCACGTTTCAAAATTGTCAAGACCACATCTGTATCCGATTGAAACCAATCATGTCTGAAAAATGAAAACGATGAGCAATGGGTTCGATAGAATCAATCGAATCACGGCTTCATTTAGTGTTTTTCCAAATAAATTATTTCTCAACCATTCAAATGGCGATTGGAAAAACTTACCTCGGTTTTGTACTCATTTTGATGCAGCTCTGCAATTATTCCTTCGAATTCAGTTTGCACAAACATAGAGAAGTATTCAGAAGGCATCTAAACCTCTAAAACTGTTGCTCCAG</canonical>
            <polymorphic>ATCTGTTGCGTTTGCATAAATTTGTTGGAACATCTTGTTCACCGCAGCATCTCCTTCCAATTTCTCCTCTTCTTCATCCTTGACTGCTTGTTTCTCAATCGCGTCCCAGTTCTTTTTCACGTTGGAAATAGGAGTTGTACTCGGGATAAACTCCGTTGGCGAAGTGGTTGGTGCAGAGGCAGCGATACCTTGTCCATCGCTTAGAAGAGAATTCCAGCGGGAGAACCGGGCACTTTTCGGGAGGCGAATTTCAATCTGAAATGAACTTGGAAGTAGACAAAAAAAAGTGCTTAAAAGTAATTATTTTAGTTTTGTTGACAGTCAGACCACATGTATCGCTTTTGAGGGAATGATCATCACGGTTGTGAAAAACCGCTAACACTCGGCTTATTGTCACTCAGCGAGTGACTCATCATCCTGTCTTCTAAACGGGAAACGAACCAGTCTTGATTCCTTCACGTTCGTACCCGCTAACCATACGACTACGCACTCCCTGCACKTCACAATCAGTATGCATTCTTATATGGGTAGGCAGTAAAACATTATTGATTGCGTTTCAGTTGAAAACAAACCTTGGCAGGTGTGCACTTGACGGTGACATCTTCACTAGTGACTTGGCCGAACAGTTCTCCGTCGAAAAGAACGTCTTCTAACTGATTCACTGTCAGGTGGTTATCATCCGAGATAATAACTTTGCAATCCTCTAATGGCACACCACGTTTCAAAATTGTCAAGACCACATCTGTATCCGATTGAAACCAATCATGTCTGAAAAATGAAAACGATGAGCAATGGGTTCGATAGAATCAATCGAATCACGGCTTCATTTAGTGTTTTTCCAAATAAATTATTTCTCAACCATTCAAATGGCGATTGGAAAAACTTACCTCGGTTTTGTACTCATTTTGATGCAGCTCTGCAATTATTCCTTCGAATTCAGTTTGCACAAACATAGAGAAGTATTCAGAAGGCATCTAAACCTCTAAAACTGTTGCTCCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGACAGTCAGACCACATGTAT</pcr_primer_p1>
		<pcr_primer_p2>AAACGCAATCAATAATGTTTTAC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTGACAGTCAGACCACATGTATCGCTTTTGAGGGAATGATCATCACGGTTGTGAAAAACCGCTAACACTCGGCTTATTGTCACTCAGCGAGTGACTCATCATCCTGTCTTCTAAACGGGAAACGAACCAGTCTTGATTCCTTCACGTTCGTACCCGCTAACCATACGACTACGCACTCCCTGCACTTCACAATCAGTATGCATTCTTATATGGGTAGGCAGTAAAACATTATTGATTGCGTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGACAGTCAGACCACATGTATCGCTTTTGAGGGAATGATCATCACGGTTGTGAAAAACCGCTAACACTCGGCTTATTGTCACTCAGCGAGTGACTCATCATCCTGTCTTCTAAACGGGAAACGAACCAGTCTTGATTCCTTCACGTTCGTACCCGCTAACCATACGACTACGCACTCCCTGCACKTCACAATCAGTATGCATTCTTATATGGGTAGGCAGTAAAACATTATTGATTGCGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25224</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>112304</contig_pos>
        <strand></strand>
        <context>AGAATCAATC[G/A]AATCACGGCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCATGTCTGAAAAATGAAAACGATGAGCAATGGGTTCGATAGAATCAATC</left_flank>
        <right_flank>AATCACGGCTTCATTTAGTGTTTTTCCAAATAAATTATTTCTCAACCATT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTGACAGTCAGACCACATGTATCGCTTTTGAGGGAATGATCATCACGGTTGTGAAAAACCGCTAACACTCGGCTTATTGTCACTCAGCGAGTGACTCATCATCCTGTCTTCTAAACGGGAAACGAACCAGTCTTGATTCCTTCACGTTCGTACCCGCTAACCATACGACTACGCACTCCCTGCACTTCACAATCAGTATGCATTCTTATATGGGTAGGCAGTAAAACATTATTGATTGCGTTTCAGTTGAAAACAAACCTTGGCAGGTGTGCACTTGACGGTGACATCTTCACTAGTGACTTGGCCGAACAGTTCTCCGTCGAAAAGAACGTCTTCTAACTGATTCACTGTCAGGTGGTTATCATCCGAGATAATAACTTTGCAATCCTCTAATGGCACACCACGTTTCAAAATTGTCAAGACCACATCTGTATCCGATTGAAACCAATCATGTCTGAAAAATGAAAACGATGAGCAATGGGTTCGATAGAATCAATCGAATCACGGCTTCATTTAGTGTTTTTCCAAATAAATTATTTCTCAACCATTCAAATGGCGATTGGAAAAACTTACCTCGGTTTTGTACTCATTTTGATGCAGCTCTGCAATTATTCCTTCGAATTCAGTTTGCACAAACATAGAGAAGTATTCAGAAGGCATCTAAACCTCTAAAACTGTTGCTCCAGAAGAAAACGCTTCAAAAGATTCAATAGGTTCATTTTATTTCAGTGAAACTCGGGTGTAAAGGAAACATTACCACCGGAAAGGGGGATAGGAGGGAGAATACATTGAATAAATTAAAGAGAAAATGAAAAGAAAATCAATCATGACCACTCCCGATTTAGAGGGTTCCAAGATGATCCTTGACCTGCTGCTTGGTGAGTCGGTGGAATCCAGTTGCATTGCAGATGGCCACCTCCACATTGCCCTCGTTCATTCCAACATCGAAAGATTCTCTGAGAGTTAAAAGAGCGGTGTGAATTCCATCATCAAGTTCAA</canonical>
            <polymorphic>GTTGACAGTCAGACCACATGTATCGCTTTTGAGGGAATGATCATCACGGTTGTGAAAAACCGCTAACACTCGGCTTATTGTCACTCAGCGAGTGACTCATCATCCTGTCTTCTAAACGGGAAACGAACCAGTCTTGATTCCTTCACGTTCGTACCCGCTAACCATACGACTACGCACTCCCTGCACTTCACAATCAGTATGCATTCTTATATGGGTAGGCAGTAAAACATTATTGATTGCGTTTCAGTTGAAAACAAACCTTGGCAGGTGTGCACTTGACGGTGACATCTTCACTAGTGACTTGGCCGAACAGTTCTCCGTCGAAAAGAACGTCTTCTAACTGATTCACTGTCAGGTGGTTATCATCCGAGATAATAACTTTGCAATCCTCTAATGGCACACCACGTTTCAAAATTGTCAAGACCACATCTGTATCCGATTGAAACCAATCATGTCTGAAAAATGAAAACGATGAGCAATGGGTTCGATAGAATCAATCRAATCACGGCTTCATTTAGTGTTTTTCCAAATAAATTATTTCTCAACCATTCAAATGGCGATTGGAAAAACTTACCTCGGTTTTGTACTCATTTTGATGCAGCTCTGCAATTATTCCTTCGAATTCAGTTTGCACAAACATAGAGAAGTATTCAGAAGGCATCTAAACCTCTAAAACTGTTGCTCCAGAAGAAAACGCTTCAAAAGATTCAATAGGTTCATTTTATTTCAGTGAAACTCGGGTGTAAAGGAAACATTACCACCGGAAAGGGGGATAGGAGGGAGAATACATTGAATAAATTAAAGAGAAAATGAAAAGAAAATCAATCATGACCACTCCCGATTTAGAGGGTTCCAAGATGATCCTTGACCTGCTGCTTGGTGAGTCGGTGGAATCCAGTTGCATTGCAGATGGCCACCTCCACATTGCCCTCGTTCATTCCAACATCGAAAGATTCTCTGAGAGTTAAAAGAGCGGTGTGAATTCCATCATCAAGTTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>328 322 164 120 53 13</canonical_bands>
                <polymorphic_bands>328 322 164 133 53</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>207 205 177 148 94 61 48 42 9 9</canonical_bands>
                <polymorphic_bands>214 207 177 148 94 61 48 42 9</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>207 205 186 148 136 61 48 9</canonical_bands>
                <polymorphic_bands>214 207 186 148 136 61 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGTCAAGACCACATCTGTATC</pcr_primer_p1>
		<pcr_primer_p2>AGATGCCTTCTGAATACTTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTGTCAAGACCACATCTGTATCCGATTGAAACCAATCATGTCTGAAAAATGAAAACGATGAGCAATGGGTTCGATAGAATCAATCGAATCACGGCTTCATTTAGTGTTTTTCCAAATAAATTATTTCTCAACCATTCAAATGGCGATTGGAAAAACTTACCTCGGTTTTGTACTCATTTTGATGCAGCTCTGCAATTATTCCTTCGAATTCAGTTTGCACAAACATAGAGAAGTATTCAGAAGGCATCT</canonical_amplicon>
		<polymorphic_amplicon>ATTGTCAAGACCACATCTGTATCCGATTGAAACCAATCATGTCTGAAAAATGAAAACGATGAGCAATGGGTTCGATAGAATCAATCRAATCACGGCTTCATTTAGTGTTTTTCCAAATAAATTATTTCTCAACCATTCAAATGGCGATTGGAAAAACTTACCTCGGTTTTGTACTCATTTTGATGCAGCTCTGCAATTATTCCTTCGAATTCAGTTTGCACAAACATAGAGAAGTATTCAGAAGGCATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25225</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>112384</contig_pos>
        <strand></strand>
        <context>CTTACCTCGG[T/G]TTTGTACTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATAAATTATTTCTCAACCATTCAAATGGCGATTGGAAAAACTTACCTCGG</left_flank>
        <right_flank>TTTGTACTCATTTTGATGCAGCTCTGCAATTATTCCTTCGAATTCAGTTT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACTCAGCGAGTGACTCATCATCCTGTCTTCTAAACGGGAAACGAACCAGTCTTGATTCCTTCACGTTCGTACCCGCTAACCATACGACTACGCACTCCCTGCACTTCACAATCAGTATGCATTCTTATATGGGTAGGCAGTAAAACATTATTGATTGCGTTTCAGTTGAAAACAAACCTTGGCAGGTGTGCACTTGACGGTGACATCTTCACTAGTGACTTGGCCGAACAGTTCTCCGTCGAAAAGAACGTCTTCTAACTGATTCACTGTCAGGTGGTTATCATCCGAGATAATAACTTTGCAATCCTCTAATGGCACACCACGTTTCAAAATTGTCAAGACCACATCTGTATCCGATTGAAACCAATCATGTCTGAAAAATGAAAACGATGAGCAATGGGTTCGATAGAATCAATCGAATCACGGCTTCATTTAGTGTTTTTCCAAATAAATTATTTCTCAACCATTCAAATGGCGATTGGAAAAACTTACCTCGGTTTTGTACTCATTTTGATGCAGCTCTGCAATTATTCCTTCGAATTCAGTTTGCACAAACATAGAGAAGTATTCAGAAGGCATCTAAACCTCTAAAACTGTTGCTCCAGAAGAAAACGCTTCAAAAGATTCAATAGGTTCATTTTATTTCAGTGAAACTCGGGTGTAAAGGAAACATTACCACCGGAAAGGGGGATAGGAGGGAGAATACATTGAATAAATTAAAGAGAAAATGAAAAGAAAATCAATCATGACCACTCCCGATTTAGAGGGTTCCAAGATGATCCTTGACCTGCTGCTTGGTGAGTCGGTGGAATCCAGTTGCATTGCAGATGGCCACCTCCACATTGCCCTCGTTCATTCCAACATCGAAAGATTCTCTGAGAGTTAAAAGAGCGGTGTGAATTCCATCATCAAGTTCAAGAGCCTCGGTGAACCGCTTCTCCAGGAATGTTTTGGCATTGACGTCGTTTTTGCCGAGAGCAGTTGCTTTCCAGGCGAAA</canonical>
            <polymorphic>TCACTCAGCGAGTGACTCATCATCCTGTCTTCTAAACGGGAAACGAACCAGTCTTGATTCCTTCACGTTCGTACCCGCTAACCATACGACTACGCACTCCCTGCACTTCACAATCAGTATGCATTCTTATATGGGTAGGCAGTAAAACATTATTGATTGCGTTTCAGTTGAAAACAAACCTTGGCAGGTGTGCACTTGACGGTGACATCTTCACTAGTGACTTGGCCGAACAGTTCTCCGTCGAAAAGAACGTCTTCTAACTGATTCACTGTCAGGTGGTTATCATCCGAGATAATAACTTTGCAATCCTCTAATGGCACACCACGTTTCAAAATTGTCAAGACCACATCTGTATCCGATTGAAACCAATCATGTCTGAAAAATGAAAACGATGAGCAATGGGTTCGATAGAATCAATCGAATCACGGCTTCATTTAGTGTTTTTCCAAATAAATTATTTCTCAACCATTCAAATGGCGATTGGAAAAACTTACCTCGGKTTTGTACTCATTTTGATGCAGCTCTGCAATTATTCCTTCGAATTCAGTTTGCACAAACATAGAGAAGTATTCAGAAGGCATCTAAACCTCTAAAACTGTTGCTCCAGAAGAAAACGCTTCAAAAGATTCAATAGGTTCATTTTATTTCAGTGAAACTCGGGTGTAAAGGAAACATTACCACCGGAAAGGGGGATAGGAGGGAGAATACATTGAATAAATTAAAGAGAAAATGAAAAGAAAATCAATCATGACCACTCCCGATTTAGAGGGTTCCAAGATGATCCTTGACCTGCTGCTTGGTGAGTCGGTGGAATCCAGTTGCATTGCAGATGGCCACCTCCACATTGCCCTCGTTCATTCCAACATCGAAAGATTCTCTGAGAGTTAAAAGAGCGGTGTGAATTCCATCATCAAGTTCAAGAGCCTCGGTGAACCGCTTCTCCAGGAATGTTTTGGCATTGACGTCGTTTTTGCCGAGAGCAGTTGCTTTCCAGGCGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGTCAAGACCACATCTGTATC</pcr_primer_p1>
		<pcr_primer_p2>AGATGCCTTCTGAATACTTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTGTCAAGACCACATCTGTATCCGATTGAAACCAATCATGTCTGAAAAATGAAAACGATGAGCAATGGGTTCGATAGAATCAATCGAATCACGGCTTCATTTAGTGTTTTTCCAAATAAATTATTTCTCAACCATTCAAATGGCGATTGGAAAAACTTACCTCGGTTTTGTACTCATTTTGATGCAGCTCTGCAATTATTCCTTCGAATTCAGTTTGCACAAACATAGAGAAGTATTCAGAAGGCATCT</canonical_amplicon>
		<polymorphic_amplicon>ATTGTCAAGACCACATCTGTATCCGATTGAAACCAATCATGTCTGAAAAATGAAAACGATGAGCAATGGGTTCGATAGAATCAATCGAATCACGGCTTCATTTAGTGTTTTTCCAAATAAATTATTTCTCAACCATTCAAATGGCGATTGGAAAAACTTACCTCGGKTTTGTACTCATTTTGATGCAGCTCTGCAATTATTCCTTCGAATTCAGTTTGCACAAACATAGAGAAGTATTCAGAAGGCATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25226</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>177759</contig_pos>
        <strand>+</strand>
        <context>TGTGAATTGA[C/T]TCACCGGCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGCGATTTTGTAGGGGAAAAGACAAAGAAAGGGAGATGCTGTGAATTGA</left_flank>
        <right_flank>TCACCGGCATTCTGGTGGCCTGGAAAGAAAGTTGAAAAATAAAAGGAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGATTCAAAATCTGGAAAAATCAAACTTTCTCTGGCAGCAAAATAAAATATTCGAGTTTGTTACAGCACCCAGAAAGTCCTCGGATCCCTTTTGTTGCCAATAACATCCAGAGGAAAAAAAACAAAAAAAAACGAGTAAACTTTGTCAACTGCAAGAAGAAAAGAAACGAAAAAAAACATTTTTCGAAGCTCATGACAACTATGGTGACACCACGGAGTCGTAGAAAAGTAGACAAGGAAGTGAAAAAAAGAAAAAAAAAGAAAAGATTCAAATGAAAAATTGCCGTAAGAAGAGCATCCTTCATTTGCGACGTGGCAGAGAATGCACCTATCTGGACGTCTCCTAAGGAAAAGAGAAAAAGAGAAGAAGAAAAAATGAAATGATCCATCATCAAAATGTGGCAGATGACGACTCCAGGAAGCTGTGCTGACAGAAACAAAAACGAAAATGCGATTTTGTAGGGGAAAAGACAAAGAAAGGGAGATGCTGTGAATTGATTCACCGGCATTCTGGTGGCCTGGAAAGAAAGTTGAAAAATAAAAGGAAAACATGACGTGTAGAAAATGAGAAATTAAATCGGAAGAGCCGGATCATCTTCAGGATTTCAGGAATCAAAATGTTCCTATAACATCATAAAAAAAGATTAATGAAGGTTCATAAAATTAATCCAGAAGTAACGATATTCGAGTCAAATCACCGAACTATTTTAAAACTAATTCAATGCCACAAACTAAACAGTAATCAGTTTTCTGAAATTTTTCGGTCGAACAGTACGCATTAAAATAATTAGATTAAATAAATTTCCATCAAATTGGATTGAAAATCAGCACTCATCGAATTGATGGGCGGAGTGAAAACTATTATTCTGGTACAAAAAATGGGAGCTGTGGAAGAGAAACGACGAGCAAAAGTCCCACGACGAAAACTACAGTAACCTAAGAATGTTTTGATTTTTAGGATTTATTTCTCGTTTTTCACCGTTTCTCCTCGAGTTTTTT</canonical>
            <polymorphic>CGGATTCAAAATCTGGAAAAATCAAACTTTCTCTGGCAGCAAAATAAAATATTCGAGTTTGTTACAGCACCCAGAAAGTCCTCGGATCCCTTTTGTTGCCAATAACATCCAGAGGAAAAAAAACAAAAAAAAACGAGTAAACTTTGTCAACTGCAAGAAGAAAAGAAACGAAAAAAAACATTTTTCGAAGCTCATGACAACTATGGTGACACCACGGAGTCGTAGAAAAGTAGACAAGGAAGTGAAAAAAAGAAAAAAAAAGAAAAGATTCAAATGAAAAATTGCCGTAAGAAGAGCATCCTTCATTTGCGACGTGGCAGAGAATGCACCTATCTGGACGTCTCCTAAGGAAAAGAGAAAAAGAGAAGAAGAAAAAATGAAATGATCCATCATCAAAATGTGGCAGATGACGACTCCAGGAAGCTGTGCTGACAGAAACAAAAACGAAAATGCGATTTTGTAGGGGAAAAGACAAAGAAAGGGAGATGCTGTGAATTGAYTCACCGGCATTCTGGTGGCCTGGAAAGAAAGTTGAAAAATAAAAGGAAAACATGACGTGTAGAAAATGAGAAATTAAATCGGAAGAGCCGGATCATCTTCAGGATTTCAGGAATCAAAATGTTCCTATAACATCATAAAAAAAGATTAATGAAGGTTCATAAAATTAATCCAGAAGTAACGATATTCGAGTCAAATCACCGAACTATTTTAAAACTAATTCAATGCCACAAACTAAACAGTAATCAGTTTTCTGAAATTTTTCGGTCGAACAGTACGCATTAAAATAATTAGATTAAATAAATTTCCATCAAATTGGATTGAAAATCAGCACTCATCGAATTGATGGGCGGAGTGAAAACTATTATTCTGGTACAAAAAATGGGAGCTGTGGAAGAGAAACGACGAGCAAAAGTCCCACGACGAAAACTACAGTAACCTAAGAATGTTTTGATTTTTAGGATTTATTTCTCGTTTTTCACCGTTTCTCCTCGAGTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>266 261 242 231</canonical_bands>
                <polymorphic_bands>492 266 242</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>389 264 231 113 3</canonical_bands>
                <polymorphic_bands>389 344 264 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCCTAAGGAAAAGAGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTCTTCCGATTTAATTTCTCAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTCCTAAGGAAAAGAGAAAAAGAGAAGAAGAAAAAATGAAATGATCCATCATCAAAATGTGGCAGATGACGACTCCAGGAAGCTGTGCTGACAGAAACAAAAACGAAAATGCGATTTTGTAGGGGAAAAGACAAAGAAAGGGAGATGCTGTGAATTGATTCACCGGCATTCTGGTGGCCTGGAAAGAAAGTTGAAAAATAAAAGGAAAACATGACGTGTAGAAAATGAGAAATTAAATCGGAAGAG</canonical_amplicon>
		<polymorphic_amplicon>TCTCCTAAGGAAAAGAGAAAAAGAGAAGAAGAAAAAATGAAATGATCCATCATCAAAATGTGGCAGATGACGACTCCAGGAAGCTGTGCTGACAGAAACAAAAACGAAAATGCGATTTTGTAGGGGAAAAGACAAAGAAAGGGAGATGCTGTGAATTGAYTCACCGGCATTCTGGTGGCCTGGAAAGAAAGTTGAAAAATAAAAGGAAAACATGACGTGTAGAAAATGAGAAATTAAATCGGAAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25227</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>177820</contig_pos>
        <strand>+</strand>
        <context>CATGACGTGT[A/T]GAAAATGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTGGTGGCCTGGAAAGAAAGTTGAAAAATAAAAGGAAAACATGACGTGT</left_flank>
        <right_flank>GAAAATGAGAAATTAAATCGGAAGAGCCGGATCATCTTCAGGATTTCAGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTACAGCACCCAGAAAGTCCTCGGATCCCTTTTGTTGCCAATAACATCCAGAGGAAAAAAAACAAAAAAAAACGAGTAAACTTTGTCAACTGCAAGAAGAAAAGAAACGAAAAAAAACATTTTTCGAAGCTCATGACAACTATGGTGACACCACGGAGTCGTAGAAAAGTAGACAAGGAAGTGAAAAAAAGAAAAAAAAAGAAAAGATTCAAATGAAAAATTGCCGTAAGAAGAGCATCCTTCATTTGCGACGTGGCAGAGAATGCACCTATCTGGACGTCTCCTAAGGAAAAGAGAAAAAGAGAAGAAGAAAAAATGAAATGATCCATCATCAAAATGTGGCAGATGACGACTCCAGGAAGCTGTGCTGACAGAAACAAAAACGAAAATGCGATTTTGTAGGGGAAAAGACAAAGAAAGGGAGATGCTGTGAATTGATTCACCGGCATTCTGGTGGCCTGGAAAGAAAGTTGAAAAATAAAAGGAAAACATGACGTGTAGAAAATGAGAAATTAAATCGGAAGAGCCGGATCATCTTCAGGATTTCAGGAATCAAAATGTTCCTATAACATCATAAAAAAAGATTAATGAAGGTTCATAAAATTAATCCAGAAGTAACGATATTCGAGTCAAATCACCGAACTATTTTAAAACTAATTCAATGCCACAAACTAAACAGTAATCAGTTTTCTGAAATTTTTCGGTCGAACAGTACGCATTAAAATAATTAGATTAAATAAATTTCCATCAAATTGGATTGAAAATCAGCACTCATCGAATTGATGGGCGGAGTGAAAACTATTATTCTGGTACAAAAAATGGGAGCTGTGGAAGAGAAACGACGAGCAAAAGTCCCACGACGAAAACTACAGTAACCTAAGAATGTTTTGATTTTTAGGATTTATTTCTCGTTTTTCACCGTTTCTCCTCGAGTTTTTTATGTCATTTTTCATCATAAAAATCGGAAGCCACCGGCGTTTTGTACCAGAAAAATAAGAAA</canonical>
            <polymorphic>TTACAGCACCCAGAAAGTCCTCGGATCCCTTTTGTTGCCAATAACATCCAGAGGAAAAAAAACAAAAAAAAACGAGTAAACTTTGTCAACTGCAAGAAGAAAAGAAACGAAAAAAAACATTTTTCGAAGCTCATGACAACTATGGTGACACCACGGAGTCGTAGAAAAGTAGACAAGGAAGTGAAAAAAAGAAAAAAAAAGAAAAGATTCAAATGAAAAATTGCCGTAAGAAGAGCATCCTTCATTTGCGACGTGGCAGAGAATGCACCTATCTGGACGTCTCCTAAGGAAAAGAGAAAAAGAGAAGAAGAAAAAATGAAATGATCCATCATCAAAATGTGGCAGATGACGACTCCAGGAAGCTGTGCTGACAGAAACAAAAACGAAAATGCGATTTTGTAGGGGAAAAGACAAAGAAAGGGAGATGCTGTGAATTGATTCACCGGCATTCTGGTGGCCTGGAAAGAAAGTTGAAAAATAAAAGGAAAACATGACGTGTWGAAAATGAGAAATTAAATCGGAAGAGCCGGATCATCTTCAGGATTTCAGGAATCAAAATGTTCCTATAACATCATAAAAAAAGATTAATGAAGGTTCATAAAATTAATCCAGAAGTAACGATATTCGAGTCAAATCACCGAACTATTTTAAAACTAATTCAATGCCACAAACTAAACAGTAATCAGTTTTCTGAAATTTTTCGGTCGAACAGTACGCATTAAAATAATTAGATTAAATAAATTTCCATCAAATTGGATTGAAAATCAGCACTCATCGAATTGATGGGCGGAGTGAAAACTATTATTCTGGTACAAAAAATGGGAGCTGTGGAAGAGAAACGACGAGCAAAAGTCCCACGACGAAAACTACAGTAACCTAAGAATGTTTTGATTTTTAGGATTTATTTCTCGTTTTTCACCGTTTCTCCTCGAGTTTTTTATGTCATTTTTCATCATAAAAATCGGAAGCCACCGGCGTTTTGTACCAGAAAAATAAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGTAGGGGAAAAGACAA</pcr_primer_p1>
		<pcr_primer_p2>TGATTTGACTCGAATATCGTTAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGTAGGGGAAAAGACAAAGAAAGGGAGATGCTGTGAATTGATTCACCGGCATTCTGGTGGCCTGGAAAGAAAGTTGAAAAATAAAAGGAAAACATGACGTGTAGAAAATGAGAAATTAAATCGGAAGAGCCGGATCATCTTCAGGATTTCAGGAATCAAAATGTTCCTATAACATCATAAAAAAAGATTAATGAAGGTTCATAAAATTAATCCAGAAGTAACGATATTCGAGTCAAATCA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGTAGGGGAAAAGACAAAGAAAGGGAGATGCTGTGAATTGATTCACCGGCATTCTGGTGGCCTGGAAAGAAAGTTGAAAAATAAAAGGAAAACATGACGTGTWGAAAATGAGAAATTAAATCGGAAGAGCCGGATCATCTTCAGGATTTCAGGAATCAAAATGTTCCTATAACATCATAAAAAAAGATTAATGAAGGTTCATAAAATTAATCCAGAAGTAACGATATTCGAGTCAAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25228</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>177861</contig_pos>
        <strand>+</strand>
        <context>ATCATCTTCA[C/G]GATTTCAGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATGACGTGTAGAAAATGAGAAATTAAATCGGAAGAGCCGGATCATCTTCA</left_flank>
        <right_flank>GATTTCAGGAATCAAAATGTTCCTATAACATCATAAAAAAAGATTAATGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACATCCAGAGGAAAAAAAACAAAAAAAAACGAGTAAACTTTGTCAACTGCAAGAAGAAAAGAAACGAAAAAAAACATTTTTCGAAGCTCATGACAACTATGGTGACACCACGGAGTCGTAGAAAAGTAGACAAGGAAGTGAAAAAAAGAAAAAAAAAGAAAAGATTCAAATGAAAAATTGCCGTAAGAAGAGCATCCTTCATTTGCGACGTGGCAGAGAATGCACCTATCTGGACGTCTCCTAAGGAAAAGAGAAAAAGAGAAGAAGAAAAAATGAAATGATCCATCATCAAAATGTGGCAGATGACGACTCCAGGAAGCTGTGCTGACAGAAACAAAAACGAAAATGCGATTTTGTAGGGGAAAAGACAAAGAAAGGGAGATGCTGTGAATTGATTCACCGGCATTCTGGTGGCCTGGAAAGAAAGTTGAAAAATAAAAGGAAAACATGACGTGTAGAAAATGAGAAATTAAATCGGAAGAGCCGGATCATCTTCAGGATTTCAGGAATCAAAATGTTCCTATAACATCATAAAAAAAGATTAATGAAGGTTCATAAAATTAATCCAGAAGTAACGATATTCGAGTCAAATCACCGAACTATTTTAAAACTAATTCAATGCCACAAACTAAACAGTAATCAGTTTTCTGAAATTTTTCGGTCGAACAGTACGCATTAAAATAATTAGATTAAATAAATTTCCATCAAATTGGATTGAAAATCAGCACTCATCGAATTGATGGGCGGAGTGAAAACTATTATTCTGGTACAAAAAATGGGAGCTGTGGAAGAGAAACGACGAGCAAAAGTCCCACGACGAAAACTACAGTAACCTAAGAATGTTTTGATTTTTAGGATTTATTTCTCGTTTTTCACCGTTTCTCCTCGAGTTTTTTATGTCATTTTTCATCATAAAAATCGGAAGCCACCGGCGTTTTGTACCAGAAAAATAAGAAAACAGAAAAACGACAAGTGAAATTGAAACAATTGCCAAGAGT</canonical>
            <polymorphic>TAACATCCAGAGGAAAAAAAACAAAAAAAAACGAGTAAACTTTGTCAACTGCAAGAAGAAAAGAAACGAAAAAAAACATTTTTCGAAGCTCATGACAACTATGGTGACACCACGGAGTCGTAGAAAAGTAGACAAGGAAGTGAAAAAAAGAAAAAAAAAGAAAAGATTCAAATGAAAAATTGCCGTAAGAAGAGCATCCTTCATTTGCGACGTGGCAGAGAATGCACCTATCTGGACGTCTCCTAAGGAAAAGAGAAAAAGAGAAGAAGAAAAAATGAAATGATCCATCATCAAAATGTGGCAGATGACGACTCCAGGAAGCTGTGCTGACAGAAACAAAAACGAAAATGCGATTTTGTAGGGGAAAAGACAAAGAAAGGGAGATGCTGTGAATTGATTCACCGGCATTCTGGTGGCCTGGAAAGAAAGTTGAAAAATAAAAGGAAAACATGACGTGTAGAAAATGAGAAATTAAATCGGAAGAGCCGGATCATCTTCASGATTTCAGGAATCAAAATGTTCCTATAACATCATAAAAAAAGATTAATGAAGGTTCATAAAATTAATCCAGAAGTAACGATATTCGAGTCAAATCACCGAACTATTTTAAAACTAATTCAATGCCACAAACTAAACAGTAATCAGTTTTCTGAAATTTTTCGGTCGAACAGTACGCATTAAAATAATTAGATTAAATAAATTTCCATCAAATTGGATTGAAAATCAGCACTCATCGAATTGATGGGCGGAGTGAAAACTATTATTCTGGTACAAAAAATGGGAGCTGTGGAAGAGAAACGACGAGCAAAAGTCCCACGACGAAAACTACAGTAACCTAAGAATGTTTTGATTTTTAGGATTTATTTCTCGTTTTTCACCGTTTCTCCTCGAGTTTTTTATGTCATTTTTCATCATAAAAATCGGAAGCCACCGGCGTTTTGTACCAGAAAAATAAGAAAACAGAAAAACGACAAGTGAAATTGAAACAATTGCCAAGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAAAGAAAGTTGAAAAATAAA</pcr_primer_p1>
		<pcr_primer_p2>CGAAAAATTTCAGAAAACTGAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TGGAAAGAAAGTTGAAAAATAAAAGGAAAACATGACGTGTAGAAAATGAGAAATTAAATCGGAAGAGCCGGATCATCTTCAGGATTTCAGGAATCAAAATGTTCCTATAACATCATAAAAAAAGATTAATGAAGGTTCATAAAATTAATCCAGAAGTAACGATATTCGAGTCAAATCACCGAACTATTTTAAAACTAATTCAATGCCACAAACTAAACAGTAATCAGTTTTCTGAAATTTTTCG</canonical_amplicon>
		<polymorphic_amplicon>TGGAAAGAAAGTTGAAAAATAAAAGGAAAACATGACGTGTAGAAAATGAGAAATTAAATCGGAAGAGCCGGATCATCTTCASGATTTCAGGAATCAAAATGTTCCTATAACATCATAAAAAAAGATTAATGAAGGTTCATAAAATTAATCCAGAAGTAACGATATTCGAGTCAAATCACCGAACTATTTTAAAACTAATTCAATGCCACAAACTAAACAGTAATCAGTTTTCTGAAATTTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25229</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>177963</contig_pos>
        <strand>+</strand>
        <context>AATCACCGAA[C/T]TATTTTAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTTCATAAAATTAATCCAGAAGTAACGATATTCGAGTCAAATCACCGAA</left_flank>
        <right_flank>TATTTTAAAACTAATTCAATGCCACAAACTAAACAGTAATCAGTTTTCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGACACCACGGAGTCGTAGAAAAGTAGACAAGGAAGTGAAAAAAAGAAAAAAAAAGAAAAGATTCAAATGAAAAATTGCCGTAAGAAGAGCATCCTTCATTTGCGACGTGGCAGAGAATGCACCTATCTGGACGTCTCCTAAGGAAAAGAGAAAAAGAGAAGAAGAAAAAATGAAATGATCCATCATCAAAATGTGGCAGATGACGACTCCAGGAAGCTGTGCTGACAGAAACAAAAACGAAAATGCGATTTTGTAGGGGAAAAGACAAAGAAAGGGAGATGCTGTGAATTGATTCACCGGCATTCTGGTGGCCTGGAAAGAAAGTTGAAAAATAAAAGGAAAACATGACGTGTAGAAAATGAGAAATTAAATCGGAAGAGCCGGATCATCTTCAGGATTTCAGGAATCAAAATGTTCCTATAACATCATAAAAAAAGATTAATGAAGGTTCATAAAATTAATCCAGAAGTAACGATATTCGAGTCAAATCACCGAACTATTTTAAAACTAATTCAATGCCACAAACTAAACAGTAATCAGTTTTCTGAAATTTTTCGGTCGAACAGTACGCATTAAAATAATTAGATTAAATAAATTTCCATCAAATTGGATTGAAAATCAGCACTCATCGAATTGATGGGCGGAGTGAAAACTATTATTCTGGTACAAAAAATGGGAGCTGTGGAAGAGAAACGACGAGCAAAAGTCCCACGACGAAAACTACAGTAACCTAAGAATGTTTTGATTTTTAGGATTTATTTCTCGTTTTTCACCGTTTCTCCTCGAGTTTTTTATGTCATTTTTCATCATAAAAATCGGAAGCCACCGGCGTTTTGTACCAGAAAAATAAGAAAACAGAAAAACGACAAGTGAAATTGAAACAATTGCCAAGAGTCGATATCAGAAACTCAATTGAAACAATCCAAGTTTTGTTCTCATTTCTGTGTATTGGATTGAAAGAGGATAAGAAGACGACGACACACATGTTTCGACAGTT</canonical>
            <polymorphic>GGTGACACCACGGAGTCGTAGAAAAGTAGACAAGGAAGTGAAAAAAAGAAAAAAAAAGAAAAGATTCAAATGAAAAATTGCCGTAAGAAGAGCATCCTTCATTTGCGACGTGGCAGAGAATGCACCTATCTGGACGTCTCCTAAGGAAAAGAGAAAAAGAGAAGAAGAAAAAATGAAATGATCCATCATCAAAATGTGGCAGATGACGACTCCAGGAAGCTGTGCTGACAGAAACAAAAACGAAAATGCGATTTTGTAGGGGAAAAGACAAAGAAAGGGAGATGCTGTGAATTGATTCACCGGCATTCTGGTGGCCTGGAAAGAAAGTTGAAAAATAAAAGGAAAACATGACGTGTAGAAAATGAGAAATTAAATCGGAAGAGCCGGATCATCTTCAGGATTTCAGGAATCAAAATGTTCCTATAACATCATAAAAAAAGATTAATGAAGGTTCATAAAATTAATCCAGAAGTAACGATATTCGAGTCAAATCACCGAAYTATTTTAAAACTAATTCAATGCCACAAACTAAACAGTAATCAGTTTTCTGAAATTTTTCGGTCGAACAGTACGCATTAAAATAATTAGATTAAATAAATTTCCATCAAATTGGATTGAAAATCAGCACTCATCGAATTGATGGGCGGAGTGAAAACTATTATTCTGGTACAAAAAATGGGAGCTGTGGAAGAGAAACGACGAGCAAAAGTCCCACGACGAAAACTACAGTAACCTAAGAATGTTTTGATTTTTAGGATTTATTTCTCGTTTTTCACCGTTTCTCCTCGAGTTTTTTATGTCATTTTTCATCATAAAAATCGGAAGCCACCGGCGTTTTGTACCAGAAAAATAAGAAAACAGAAAAACGACAAGTGAAATTGAAACAATTGCCAAGAGTCGATATCAGAAACTCAATTGAAACAATCCAAGTTTTGTTCTCATTTCTGTGTATTGGATTGAAAGAGGATAAGAAGACGACGACACACATGTTTCGACAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAAAGAAAGTTGAAAAATAAA</pcr_primer_p1>
		<pcr_primer_p2>CGAAAAATTTCAGAAAACTGAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TGGAAAGAAAGTTGAAAAATAAAAGGAAAACATGACGTGTAGAAAATGAGAAATTAAATCGGAAGAGCCGGATCATCTTCAGGATTTCAGGAATCAAAATGTTCCTATAACATCATAAAAAAAGATTAATGAAGGTTCATAAAATTAATCCAGAAGTAACGATATTCGAGTCAAATCACCGAACTATTTTAAAACTAATTCAATGCCACAAACTAAACAGTAATCAGTTTTCTGAAATTTTTCG</canonical_amplicon>
		<polymorphic_amplicon>TGGAAAGAAAGTTGAAAAATAAAAGGAAAACATGACGTGTAGAAAATGAGAAATTAAATCGGAAGAGCCGGATCATCTTCAGGATTTCAGGAATCAAAATGTTCCTATAACATCATAAAAAAAGATTAATGAAGGTTCATAAAATTAATCCAGAAGTAACGATATTCGAGTCAAATCACCGAAYTATTTTAAAACTAATTCAATGCCACAAACTAAACAGTAATCAGTTTTCTGAAATTTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25230</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>177997</contig_pos>
        <strand>+</strand>
        <context>ACAAACTAAA[A/C]AGTAATCAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAGTCAAATCACCGAACTATTTTAAAACTAATTCAATGCCACAAACTAAA</left_flank>
        <right_flank>AGTAATCAGTTTTCTGAAATTTTTCGGTCGAACAGTACGCATTAAAATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGTGAAAAAAAGAAAAAAAAAGAAAAGATTCAAATGAAAAATTGCCGTAAGAAGAGCATCCTTCATTTGCGACGTGGCAGAGAATGCACCTATCTGGACGTCTCCTAAGGAAAAGAGAAAAAGAGAAGAAGAAAAAATGAAATGATCCATCATCAAAATGTGGCAGATGACGACTCCAGGAAGCTGTGCTGACAGAAACAAAAACGAAAATGCGATTTTGTAGGGGAAAAGACAAAGAAAGGGAGATGCTGTGAATTGATTCACCGGCATTCTGGTGGCCTGGAAAGAAAGTTGAAAAATAAAAGGAAAACATGACGTGTAGAAAATGAGAAATTAAATCGGAAGAGCCGGATCATCTTCAGGATTTCAGGAATCAAAATGTTCCTATAACATCATAAAAAAAGATTAATGAAGGTTCATAAAATTAATCCAGAAGTAACGATATTCGAGTCAAATCACCGAACTATTTTAAAACTAATTCAATGCCACAAACTAAACAGTAATCAGTTTTCTGAAATTTTTCGGTCGAACAGTACGCATTAAAATAATTAGATTAAATAAATTTCCATCAAATTGGATTGAAAATCAGCACTCATCGAATTGATGGGCGGAGTGAAAACTATTATTCTGGTACAAAAAATGGGAGCTGTGGAAGAGAAACGACGAGCAAAAGTCCCACGACGAAAACTACAGTAACCTAAGAATGTTTTGATTTTTAGGATTTATTTCTCGTTTTTCACCGTTTCTCCTCGAGTTTTTTATGTCATTTTTCATCATAAAAATCGGAAGCCACCGGCGTTTTGTACCAGAAAAATAAGAAAACAGAAAAACGACAAGTGAAATTGAAACAATTGCCAAGAGTCGATATCAGAAACTCAATTGAAACAATCCAAGTTTTGTTCTCATTTCTGTGTATTGGATTGAAAGAGGATAAGAAGACGACGACACACATGTTTCGACAGTTGCTTCTCGGTGCGATCTGTGCTCTTTTTGTATAG</canonical>
            <polymorphic>GAAGTGAAAAAAAGAAAAAAAAAGAAAAGATTCAAATGAAAAATTGCCGTAAGAAGAGCATCCTTCATTTGCGACGTGGCAGAGAATGCACCTATCTGGACGTCTCCTAAGGAAAAGAGAAAAAGAGAAGAAGAAAAAATGAAATGATCCATCATCAAAATGTGGCAGATGACGACTCCAGGAAGCTGTGCTGACAGAAACAAAAACGAAAATGCGATTTTGTAGGGGAAAAGACAAAGAAAGGGAGATGCTGTGAATTGATTCACCGGCATTCTGGTGGCCTGGAAAGAAAGTTGAAAAATAAAAGGAAAACATGACGTGTAGAAAATGAGAAATTAAATCGGAAGAGCCGGATCATCTTCAGGATTTCAGGAATCAAAATGTTCCTATAACATCATAAAAAAAGATTAATGAAGGTTCATAAAATTAATCCAGAAGTAACGATATTCGAGTCAAATCACCGAACTATTTTAAAACTAATTCAATGCCACAAACTAAAMAGTAATCAGTTTTCTGAAATTTTTCGGTCGAACAGTACGCATTAAAATAATTAGATTAAATAAATTTCCATCAAATTGGATTGAAAATCAGCACTCATCGAATTGATGGGCGGAGTGAAAACTATTATTCTGGTACAAAAAATGGGAGCTGTGGAAGAGAAACGACGAGCAAAAGTCCCACGACGAAAACTACAGTAACCTAAGAATGTTTTGATTTTTAGGATTTATTTCTCGTTTTTCACCGTTTCTCCTCGAGTTTTTTATGTCATTTTTCATCATAAAAATCGGAAGCCACCGGCGTTTTGTACCAGAAAAATAAGAAAACAGAAAAACGACAAGTGAAATTGAAACAATTGCCAAGAGTCGATATCAGAAACTCAATTGAAACAATCCAAGTTTTGTTCTCATTTCTGTGTATTGGATTGAAAGAGGATAAGAAGACGACGACACACATGTTTCGACAGTTGCTTCTCGGTGCGATCTGTGCTCTTTTTGTATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 220 160 49 37 33</canonical_bands>
                <polymorphic_bands>534 220 160 49 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTCAGGAATCAAAATGTTC</pcr_primer_p1>
		<pcr_primer_p2>AATTCGATGAGTGCTGATTT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GATTTCAGGAATCAAAATGTTCCTATAACATCATAAAAAAAGATTAATGAAGGTTCATAAAATTAATCCAGAAGTAACGATATTCGAGTCAAATCACCGAACTATTTTAAAACTAATTCAATGCCACAAACTAAACAGTAATCAGTTTTCTGAAATTTTTCGGTCGAACAGTACGCATTAAAATAATTAGATTAAATAAATTTCCATCAAATTGGATTGAAAATCAGCACTCATCGAATT</canonical_amplicon>
		<polymorphic_amplicon>GATTTCAGGAATCAAAATGTTCCTATAACATCATAAAAAAAGATTAATGAAGGTTCATAAAATTAATCCAGAAGTAACGATATTCGAGTCAAATCACCGAACTATTTTAAAACTAATTCAATGCCACAAACTAAAMAGTAATCAGTTTTCTGAAATTTTTCGGTCGAACAGTACGCATTAAAATAATTAGATTAAATAAATTTCCATCAAATTGGATTGAAAATCAGCACTCATCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25231</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>178112</contig_pos>
        <strand>+</strand>
        <context>GATGGGCGGA[G/T]TGAAAACTat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCCATCAAATTGGATTGAAAATCAGCACTCATCGAATTGATGGGCGGA</left_flank>
        <right_flank>TGAAAACTATTATTCTGGTACAAAAAATGGGAGCTGTGGAAGAGAAACGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGAAAAAGAGAAGAAGAAAAAATGAAATGATCCATCATCAAAATGTGGCAGATGACGACTCCAGGAAGCTGTGCTGACAGAAACAAAAACGAAAATGCGATTTTGTAGGGGAAAAGACAAAGAAAGGGAGATGCTGTGAATTGATTCACCGGCATTCTGGTGGCCTGGAAAGAAAGTTGAAAAATAAAAGGAAAACATGACGTGTAGAAAATGAGAAATTAAATCGGAAGAGCCGGATCATCTTCAGGATTTCAGGAATCAAAATGTTCCTATAACATCATAAAAAAAGATTAATGAAGGTTCATAAAATTAATCCAGAAGTAACGATATTCGAGTCAAATCACCGAACTATTTTAAAACTAATTCAATGCCACAAACTAAACAGTAATCAGTTTTCTGAAATTTTTCGGTCGAACAGTACGCATTAAAATAATTAGATTAAATAAATTTCCATCAAATTGGATTGAAAATCAGCACTCATCGAATTGATGGGCGGAGTGAAAACTATTATTCTGGTACAAAAAATGGGAGCTGTGGAAGAGAAACGACGAGCAAAAGTCCCACGACGAAAACTACAGTAACCTAAGAATGTTTTGATTTTTAGGATTTATTTCTCGTTTTTCACCGTTTCTCCTCGAGTTTTTTATGTCATTTTTCATCATAAAAATCGGAAGCCACCGGCGTTTTGTACCAGAAAAATAAGAAAACAGAAAAACGACAAGTGAAATTGAAACAATTGCCAAGAGTCGATATCAGAAACTCAATTGAAACAATCCAAGTTTTGTTCTCATTTCTGTGTATTGGATTGAAAGAGGATAAGAAGACGACGACACACATGTTTCGACAGTTGCTTCTCGGTGCGATCTGTGCTCTTTTTGTATAGGGGAATCAATTTTGCCACATGTTTTGAGAGGAGAATGAGAAAAAATGTCTTCCTCCCGGCACATTGGCAAAAAAGTTCTCTTACTCTTGATCTCATATTCTTTTCACTCCTCAGT</canonical>
            <polymorphic>AGAGAAAAAGAGAAGAAGAAAAAATGAAATGATCCATCATCAAAATGTGGCAGATGACGACTCCAGGAAGCTGTGCTGACAGAAACAAAAACGAAAATGCGATTTTGTAGGGGAAAAGACAAAGAAAGGGAGATGCTGTGAATTGATTCACCGGCATTCTGGTGGCCTGGAAAGAAAGTTGAAAAATAAAAGGAAAACATGACGTGTAGAAAATGAGAAATTAAATCGGAAGAGCCGGATCATCTTCAGGATTTCAGGAATCAAAATGTTCCTATAACATCATAAAAAAAGATTAATGAAGGTTCATAAAATTAATCCAGAAGTAACGATATTCGAGTCAAATCACCGAACTATTTTAAAACTAATTCAATGCCACAAACTAAACAGTAATCAGTTTTCTGAAATTTTTCGGTCGAACAGTACGCATTAAAATAATTAGATTAAATAAATTTCCATCAAATTGGATTGAAAATCAGCACTCATCGAATTGATGGGCGGAKTGAAAACTATTATTCTGGTACAAAAAATGGGAGCTGTGGAAGAGAAACGACGAGCAAAAGTCCCACGACGAAAACTACAGTAACCTAAGAATGTTTTGATTTTTAGGATTTATTTCTCGTTTTTCACCGTTTCTCCTCGAGTTTTTTATGTCATTTTTCATCATAAAAATCGGAAGCCACCGGCGTTTTGTACCAGAAAAATAAGAAAACAGAAAAACGACAAGTGAAATTGAAACAATTGCCAAGAGTCGATATCAGAAACTCAATTGAAACAATCCAAGTTTTGTTCTCATTTCTGTGTATTGGATTGAAAGAGGATAAGAAGACGACGACACACATGTTTCGACAGTTGCTTCTCGGTGCGATCTGTGCTCTTTTTGTATAGGGGAATCAATTTTGCCACATGTTTTGAGAGGAGAATGAGAAAAAATGTCTTCCTCCCGGCACATTGGCAAAAAAGTTCTCTTACTCTTGATCTCATATTCTTTTCACTCCTCAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>139 103 74 65 61 53 49 47 45 44 42 36 34 31 30 27 26 26 24 14 10 9 9 2</canonical_bands>
                <polymorphic_bands>139 103 74 65 61 60 53 49 47 45 44 42 34 31 30 27 26 26 14 10 9 9 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCGAACAGTACGCATTAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTTATTTTTCTGGTACAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>298</pcr_amplicon_size>
		<canonical_amplicon>GTCGAACAGTACGCATTAAAATAATTAGATTAAATAAATTTCCATCAAATTGGATTGAAAATCAGCACTCATCGAATTGATGGGCGGAGTGAAAACTATTATTCTGGTACAAAAAATGGGAGCTGTGGAAGAGAAACGACGAGCAAAAGTCCCACGACGAAAACTACAGTAACCTAAGAATGTTTTGATTTTTAGGATTTATTTCTCGTTTTTCACCGTTTCTCCTCGAGTTTTTTATGTCATTTTTCATCATAAAAATCGGAAGCCACCGGCGTTTTGTACCAGAAAAATAAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTCGAACAGTACGCATTAAAATAATTAGATTAAATAAATTTCCATCAAATTGGATTGAAAATCAGCACTCATCGAATTGATGGGCGGAKTGAAAACTATTATTCTGGTACAAAAAATGGGAGCTGTGGAAGAGAAACGACGAGCAAAAGTCCCACGACGAAAACTACAGTAACCTAAGAATGTTTTGATTTTTAGGATTTATTTCTCGTTTTTCACCGTTTCTCCTCGAGTTTTTTATGTCATTTTTCATCATAAAAATCGGAAGCCACCGGCGTTTTGTACCAGAAAAATAAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25232</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>178371</contig_pos>
        <strand>+</strand>
        <context>TCGATATCAG[A/G]AACTCAATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAGAAAAACGACAAGTGAAATTGAAACAATTGCCAAGAGTCGATATCAG</left_flank>
        <right_flank>AACTCAATTGAAACAATCCAAGTTTTGTTCTCATTTCTGTGTATTGGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAAAATGTTCCTATAACATCATAAAAAAAGATTAATGAAGGTTCATAAAATTAATCCAGAAGTAACGATATTCGAGTCAAATCACCGAACTATTTTAAAACTAATTCAATGCCACAAACTAAACAGTAATCAGTTTTCTGAAATTTTTCGGTCGAACAGTACGCATTAAAATAATTAGATTAAATAAATTTCCATCAAATTGGATTGAAAATCAGCACTCATCGAATTGATGGGCGGAGTGAAAACTATTATTCTGGTACAAAAAATGGGAGCTGTGGAAGAGAAACGACGAGCAAAAGTCCCACGACGAAAACTACAGTAACCTAAGAATGTTTTGATTTTTAGGATTTATTTCTCGTTTTTCACCGTTTCTCCTCGAGTTTTTTATGTCATTTTTCATCATAAAAATCGGAAGCCACCGGCGTTTTGTACCAGAAAAATAAGAAAACAGAAAAACGACAAGTGAAATTGAAACAATTGCCAAGAGTCGATATCAGAAACTCAATTGAAACAATCCAAGTTTTGTTCTCATTTCTGTGTATTGGATTGAAAGAGGATAAGAAGACGACGACACACATGTTTCGACAGTTGCTTCTCGGTGCGATCTGTGCTCTTTTTGTATAGGGGAATCAATTTTGCCACATGTTTTGAGAGGAGAATGAGAAAAAATGTCTTCCTCCCGGCACATTGGCAAAAAAGTTCTCTTACTCTTGATCTCATATTCTTTTCACTCCTCAGTCAACTCGAAAATTCATTTTCTGAAAAAAAAACGTCAAAAAACAGAAAACGAGGAGGAGGTGATTCTAGAGGAGTGTCTTAAATTCTCTCATCAAGATGAATAAGTTATAAGTGTATCCCCTCCTACCTACATTCGGTTTCGACGTCTTCTTTTTTAGTATCTCTGTGACATCATTTTGATCTTCTTATAAGCGAACCGAATCAGTGAAAAAAGGAAGAAGAAGAAGATGGAAGCGAGGCTTTGAACAAGGAAAAAAAAG</canonical>
            <polymorphic>ATCAAAATGTTCCTATAACATCATAAAAAAAGATTAATGAAGGTTCATAAAATTAATCCAGAAGTAACGATATTCGAGTCAAATCACCGAACTATTTTAAAACTAATTCAATGCCACAAACTAAACAGTAATCAGTTTTCTGAAATTTTTCGGTCGAACAGTACGCATTAAAATAATTAGATTAAATAAATTTCCATCAAATTGGATTGAAAATCAGCACTCATCGAATTGATGGGCGGAGTGAAAACTATTATTCTGGTACAAAAAATGGGAGCTGTGGAAGAGAAACGACGAGCAAAAGTCCCACGACGAAAACTACAGTAACCTAAGAATGTTTTGATTTTTAGGATTTATTTCTCGTTTTTCACCGTTTCTCCTCGAGTTTTTTATGTCATTTTTCATCATAAAAATCGGAAGCCACCGGCGTTTTGTACCAGAAAAATAAGAAAACAGAAAAACGACAAGTGAAATTGAAACAATTGCCAAGAGTCGATATCAGRAACTCAATTGAAACAATCCAAGTTTTGTTCTCATTTCTGTGTATTGGATTGAAAGAGGATAAGAAGACGACGACACACATGTTTCGACAGTTGCTTCTCGGTGCGATCTGTGCTCTTTTTGTATAGGGGAATCAATTTTGCCACATGTTTTGAGAGGAGAATGAGAAAAAATGTCTTCCTCCCGGCACATTGGCAAAAAAGTTCTCTTACTCTTGATCTCATATTCTTTTCACTCCTCAGTCAACTCGAAAATTCATTTTCTGAAAAAAAAACGTCAAAAAACAGAAAACGAGGAGGAGGTGATTCTAGAGGAGTGTCTTAAATTCTCTCATCAAGATGAATAAGTTATAAGTGTATCCCCTCCTACCTACATTCGGTTTCGACGTCTTCTTTTTTAGTATCTCTGTGACATCATTTTGATCTTCTTATAAGCGAACCGAATCAGTGAAAAAAGGAAGAAGAAGAAGATGGAAGCGAGGCTTTGAACAAGGAAAAAAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>272 264 238 141 85</canonical_bands>
                <polymorphic_bands>349 272 238 141</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTACCAGAAAAATAAGAAAACA</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCATTCTCCTCTCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TTGTACCAGAAAAATAAGAAAACAGAAAAACGACAAGTGAAATTGAAACAATTGCCAAGAGTCGATATCAGAAACTCAATTGAAACAATCCAAGTTTTGTTCTCATTTCTGTGTATTGGATTGAAAGAGGATAAGAAGACGACGACACACATGTTTCGACAGTTGCTTCTCGGTGCGATCTGTGCTCTTTTTGTATAGGGGAATCAATTTTGCCACATGTTTTGAGAGGAGAATGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TTGTACCAGAAAAATAAGAAAACAGAAAAACGACAAGTGAAATTGAAACAATTGCCAAGAGTCGATATCAGRAACTCAATTGAAACAATCCAAGTTTTGTTCTCATTTCTGTGTATTGGATTGAAAGAGGATAAGAAGACGACGACACACATGTTTCGACAGTTGCTTCTCGGTGCGATCTGTGCTCTTTTTGTATAGGGGAATCAATTTTGCCACATGTTTTGAGAGGAGAATGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25233</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>288296</contig_pos>
        <strand>+</strand>
        <context>TGTAGTAGTT[C/G]ATGTTCATTG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGTACGGTTTCATATAGAATCCAGTTTTTGTTGGAAAGCTTGTAGTAGTT</left_flank>
        <right_flank>ATGTTCATTGATGTTCACTGAAAAGCAACGAAACAAAGTAAAAATTTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCATTTTCCAAGCATGAGAAATCGAGTTAAAGATGCAAATACTCCAAGTTCTGTTTATTAAATGTCGTACTTTGATATTATTCCCAATCGTACAATACGGGTGCAAAGAATAAAAGTTAACTGTTTTCGTGAATAACATAATACTGAACAAAAAATTGACCATCTGATGCACTTTTCGAGCTAATATCAATACTGTCTCCATATTCTGGAGTACTCCATCCGAGTATTTGATCAACAGGTCTCACACTGAAACCGTTTGCGTCTCCCAGTTTCACAGAATTCACCGACACCGATGAATCATCTGCCAAAGAATCCGATTGCCTAGGAAGATAAATATTGTAAAAGAGAATATGTCCCTTGCACTCACATTGGCTCCAACAAAACTTCCGCTACTAGAAAATGAGTTGACTCTATCCATATTTATCAAAATGTTCCCATCTGGTCGGTTGTACGGTTTCATATAGAATCCAGTTTTTGTTGGAAAGCTTGTAGTAGTTGATGTTCATTGATGTTCACTGAAAAGCAACGAAACAAAGTAAAAATTTTGATTTGTTTCAACTTACAATAGTTAGGAAATATTTCGAACTGAATACCTTTGTGGACTTTCATGTAAAAGATTGGAGTGCTGATTGAGAAAGGTTCAATATATGAGAAGAATCTGAAACAATGTTAAGATTACGTAGGTAAAGGGGAACTGTTGAAAAACTGCAAAGTGACATCTGAAGAAGCACAAACTGGCGAATGGCTGCTAGTAAGCATCCGAAGGAAAACTGACGGGTCGTTGACGGACTATCGACGGACCATCATTTTTTCGGCAGCCGCCCTGTACTTGTGTATAAACAAAATTCAAACTCACTTCATATTATCTGTGTAGACACAGGATTAGAAAATATTTGAGAATACGATTTTTGAATTCCATTCTTTGGTACACCTGGATATATAAAAACCGAAGAGTTCTCGGATTGGACCCAGTTATTGACCGTACTAGACTGATACGG</canonical>
            <polymorphic>GATCATTTTCCAAGCATGAGAAATCGAGTTAAAGATGCAAATACTCCAAGTTCTGTTTATTAAATGTCGTACTTTGATATTATTCCCAATCGTACAATACGGGTGCAAAGAATAAAAGTTAACTGTTTTCGTGAATAACATAATACTGAACAAAAAATTGACCATCTGATGCACTTTTCGAGCTAATATCAATACTGTCTCCATATTCTGGAGTACTCCATCCGAGTATTTGATCAACAGGTCTCACACTGAAACCGTTTGCGTCTCCCAGTTTCACAGAATTCACCGACACCGATGAATCATCTGCCAAAGAATCCGATTGCCTAGGAAGATAAATATTGTAAAAGAGAATATGTCCCTTGCACTCACATTGGCTCCAACAAAACTTCCGCTACTAGAAAATGAGTTGACTCTATCCATATTTATCAAAATGTTCCCATCTGGTCGGTTGTACGGTTTCATATAGAATCCAGTTTTTGTTGGAAAGCTTGTAGTAGTTSATGTTCATTGATGTTCACTGAAAAGCAACGAAACAAAGTAAAAATTTTGATTTGTTTCAACTTACAATAGTTAGGAAATATTTCGAACTGAATACCTTTGTGGACTTTCATGTAAAAGATTGGAGTGCTGATTGAGAAAGGTTCAATATATGAGAAGAATCTGAAACAATGTTAAGATTACGTAGGTAAAGGGGAACTGTTGAAAAACTGCAAAGTGACATCTGAAGAAGCACAAACTGGCGAATGGCTGCTAGTAAGCATCCGAAGGAAAACTGACGGGTCGTTGACGGACTATCGACGGACCATCATTTTTTCGGCAGCCGCCCTGTACTTGTGTATAAACAAAATTCAAACTCACTTCATATTATCTGTGTAGACACAGGATTAGAAAATATTTGAGAATACGATTTTTGAATTCCATTCTTTGGTACACCTGGATATATAAAAACCGAAGAGTTCTCGGATTGGACCCAGTTATTGACCGTACTAGACTGATACGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTTCCGCTACTAGAAAATGAG</pcr_primer_p1>
		<pcr_primer_p2>AATCAGCACTCCAATCTTTTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACTTCCGCTACTAGAAAATGAGTTGACTCTATCCATATTTATCAAAATGTTCCCATCTGGTCGGTTGTACGGTTTCATATAGAATCCAGTTTTTGTTGGAAAGCTTGTAGTAGTTGATGTTCATTGATGTTCACTGAAAAGCAACGAAACAAAGTAAAAATTTTGATTTGTTTCAACTTACAATAGTTAGGAAATATTTCGAACTGAATACCTTTGTGGACTTTCATGTAAAAGATTGGAGTGCTGATT</canonical_amplicon>
		<polymorphic_amplicon>AACTTCCGCTACTAGAAAATGAGTTGACTCTATCCATATTTATCAAAATGTTCCCATCTGGTCGGTTGTACGGTTTCATATAGAATCCAGTTTTTGTTGGAAAGCTTGTAGTAGTTSATGTTCATTGATGTTCACTGAAAAGCAACGAAACAAAGTAAAAATTTTGATTTGTTTCAACTTACAATAGTTAGGAAATATTTCGAACTGAATACCTTTGTGGACTTTCATGTAAAAGATTGGAGTGCTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25234</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>288537</contig_pos>
        <strand>+</strand>
        <context>CACAAACTGG[C/T]GAATGGCTGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGGAACTGTTGAAAAACTGCAAAGTGACATCTGAAGAAGCACAAACTGG</left_flank>
        <right_flank>GAATGGCTGCTAGTAAGCATCCGAAGGAAAACTGACGGGTCGTTGACGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCACACTGAAACCGTTTGCGTCTCCCAGTTTCACAGAATTCACCGACACCGATGAATCATCTGCCAAAGAATCCGATTGCCTAGGAAGATAAATATTGTAAAAGAGAATATGTCCCTTGCACTCACATTGGCTCCAACAAAACTTCCGCTACTAGAAAATGAGTTGACTCTATCCATATTTATCAAAATGTTCCCATCTGGTCGGTTGTACGGTTTCATATAGAATCCAGTTTTTGTTGGAAAGCTTGTAGTAGTTGATGTTCATTGATGTTCACTGAAAAGCAACGAAACAAAGTAAAAATTTTGATTTGTTTCAACTTACAATAGTTAGGAAATATTTCGAACTGAATACCTTTGTGGACTTTCATGTAAAAGATTGGAGTGCTGATTGAGAAAGGTTCAATATATGAGAAGAATCTGAAACAATGTTAAGATTACGTAGGTAAAGGGGAACTGTTGAAAAACTGCAAAGTGACATCTGAAGAAGCACAAACTGGCGAATGGCTGCTAGTAAGCATCCGAAGGAAAACTGACGGGTCGTTGACGGACTATCGACGGACCATCATTTTTTCGGCAGCCGCCCTGTACTTGTGTATAAACAAAATTCAAACTCACTTCATATTATCTGTGTAGACACAGGATTAGAAAATATTTGAGAATACGATTTTTGAATTCCATTCTTTGGTACACCTGGATATATAAAAACCGAAGAGTTCTCGGATTGGACCCAGTTATTGACCGTACTAGACTGATACGGTACCACTGAAACGTTGGAATTCAGAAACACTAGTGTACAGTTTTCTGGTTTAGTCTCATCAAAATGTATTGTCTGTTGCTGATCCACATCGTATACGTAAAAATTGTTGTCTGAAACATCGTTTGGGTTTGAACTTCAGCATAAGAATCATGAAACCATTTTTACCATTCATTTGTCTTCTAGTGGTCATGTACAAAAATCCAGTCAGAAATCTCATATCAATATCTGTCAAGTTTGAAAT</canonical>
            <polymorphic>TCTCACACTGAAACCGTTTGCGTCTCCCAGTTTCACAGAATTCACCGACACCGATGAATCATCTGCCAAAGAATCCGATTGCCTAGGAAGATAAATATTGTAAAAGAGAATATGTCCCTTGCACTCACATTGGCTCCAACAAAACTTCCGCTACTAGAAAATGAGTTGACTCTATCCATATTTATCAAAATGTTCCCATCTGGTCGGTTGTACGGTTTCATATAGAATCCAGTTTTTGTTGGAAAGCTTGTAGTAGTTGATGTTCATTGATGTTCACTGAAAAGCAACGAAACAAAGTAAAAATTTTGATTTGTTTCAACTTACAATAGTTAGGAAATATTTCGAACTGAATACCTTTGTGGACTTTCATGTAAAAGATTGGAGTGCTGATTGAGAAAGGTTCAATATATGAGAAGAATCTGAAACAATGTTAAGATTACGTAGGTAAAGGGGAACTGTTGAAAAACTGCAAAGTGACATCTGAAGAAGCACAAACTGGYGAATGGCTGCTAGTAAGCATCCGAAGGAAAACTGACGGGTCGTTGACGGACTATCGACGGACCATCATTTTTTCGGCAGCCGCCCTGTACTTGTGTATAAACAAAATTCAAACTCACTTCATATTATCTGTGTAGACACAGGATTAGAAAATATTTGAGAATACGATTTTTGAATTCCATTCTTTGGTACACCTGGATATATAAAAACCGAAGAGTTCTCGGATTGGACCCAGTTATTGACCGTACTAGACTGATACGGTACCACTGAAACGTTGGAATTCAGAAACACTAGTGTACAGTTTTCTGGTTTAGTCTCATCAAAATGTATTGTCTGTTGCTGATCCACATCGTATACGTAAAAATTGTTGTCTGAAACATCGTTTGGGTTTGAACTTCAGCATAAGAATCATGAAACCATTTTTACCATTCATTTGTCTTCTAGTGGTCATGTACAAAAATCCAGTCAGAAATCTCATATCAATATCTGTCAAGTTTGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAAAAGATTGGAGTGCTGATT</pcr_primer_p1>
		<pcr_primer_p2>TGAAGTGAGTTTGAATTTTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTAAAAGATTGGAGTGCTGATTGAGAAAGGTTCAATATATGAGAAGAATCTGAAACAATGTTAAGATTACGTAGGTAAAGGGGAACTGTTGAAAAACTGCAAAGTGACATCTGAAGAAGCACAAACTGGCGAATGGCTGCTAGTAAGCATCCGAAGGAAAACTGACGGGTCGTTGACGGACTATCGACGGACCATCATTTTTTCGGCAGCCGCCCTGTACTTGTGTATAAACAAAATTCAAACTCACTTCA</canonical_amplicon>
		<polymorphic_amplicon>GTAAAAGATTGGAGTGCTGATTGAGAAAGGTTCAATATATGAGAAGAATCTGAAACAATGTTAAGATTACGTAGGTAAAGGGGAACTGTTGAAAAACTGCAAAGTGACATCTGAAGAAGCACAAACTGGYGAATGGCTGCTAGTAAGCATCCGAAGGAAAACTGACGGGTCGTTGACGGACTATCGACGGACCATCATTTTTTCGGCAGCCGCCCTGTACTTGTGTATAAACAAAATTCAAACTCACTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25235</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>293015</contig_pos>
        <strand>+</strand>
        <context>CAAATWTTGT[A/G]TGAAGTTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAACATTCCTAGTTTTGTAAAGAACTGTCATTTGAAGTTCAAATGTTGT</left_flank>
        <right_flank>TGAAGTTCAATTTTGAACTAACACTGAGATATGTGTGGAATTGAGTTGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAGTTAACAATTTATCTTGACAAGCCCTATGTCCAAATGGTAGTACTTGTCTCACTTTCTCTGAATCCGTTGCGTGGTATTCTGGGAAACAATCCAAAGTTTTTGCAGGAGTCGTGTGAAGTGCCTCTCTAATTCTGACAACGAATCCGATTCCAGTGAAAATTGCGGAGTTAACCTTCAGAGCAGTTACGTCGACAACTTTCCGATCCTCTCGAATGTAGTTGAAATGTGAAAGTTTTTGACCTTTTCTCATTTCGAATGGTAAAAACTTTCCAGAAGAATAGTTGAATCGAACAGGCATCATATTATCAGATTCGAGAGAATGGGAGTTGTGAAGAGTGACTGCACGAACACTGTGATCAGCGCGGAAAATGATAGCATGGGAAACTAATTTTTGATGTTCCAAAGAATTTACTCGGTGGGAAATTGCGTTTCCATCCTGAAAAAAAAACATTCCTAGTTTTGTAAAGAACTGTCATTTGAAGTTCAAATGTTGTTTGAAGTTCAATTTTGAACTAACACTGAGATATGTGTGGAATTGAGTTGACGTAGTTTCCAAATTTAGAGGATTTCTGTGACGGAGACCTCTGTATCTATGCTCCACGACTTCTCCGTTTCCAATTTTAATTTCAGCATGATACTCTCCCATTTGATGAAAAACGTTTCCCGTACGGTACCTAGAAAACAGTCAAGGACATTTAAAAAATATTTTACAAACTTTTCAATCGTTTTCAAATTCTCAGCCAACTCAAGCGGTTTTTCGTGATAAACATCTGTGAAAGACTTCAATGGCGCATTGGAATAGAAGAATCTTGCATTTGTAACACATCTCCACCATCCAGAGAGAATGATAAAATGAGAATTTCCATCGTTATCCTTGAGATACCCACGGAAGTTGATCCTCCACTTTCGGAATGGATTTCGAAGTTCAATAATAAGAGGACCGCAGATTATGGTACGGTTTTCAGCAAAATATGCATCGAATGATCCTGAATACA</canonical>
            <polymorphic>ACCAGTTAACAATTTATCTTGACAAGCCCTATGTCCAAATGGTAGTACTTGTCTCACTTTCTCTGAATCCGTTGCGTGGTATTCTGGGAAACAATCCAAAGTTTTTGCAGGAGTCGTGTGAAGTGCCTCTCTAATTCTGACAACGAATCCGATTCCAGTGAAAATTGCGGAGTTAACCTTCAGAGCAGTTACGTCGACAACTTTCCGATCCTCTCGAATGTAGTTGAAATGTGAAAGTTTTTGACCTTTTCTCATTTCGAATGGTAAAAACTTTCCAGAAGAATAGTTGAATCGAACAGGCATCATATTATCAGATTCGAGAGAATGGGAGTTGTGAAGAGTGACTGCACGAACACTGTGATCAGCGCGGAAAATGATAGCATGGGAAACTAATTTTTGATGTTCCAAAGAATTTACTCGGTGGGAAATTGCGTTTCCATCCTGAAAAAAAAACATTCCTAGTTTTGTAAAGAACTGTCATTTGAAGTTCAAATGTTGTRTGAAGTTCAATTTTGAACTAACACTGAGATATGTGTGGAATTGAGTTGACGTAGTTTCCAAATTTAGAGGATTTCTGTGACGGAGACCTCTGTATCTATGCTCCACGACTTCTCCGTTTCCAATTTTAATTTCAGCATGATACTCTCCCATTTGATGAAAAACGTTTCCCGTACGGTACCTAGAAAACAGTCAAGGACATTTAAAAAATATTTTACAAACTTTTCAATCGTTTTCAAATTCTCAGCCAACTCAAGCGGTTTTTCGTGATAAACATCTGTGAAAGACTTCAATGGCGCATTGGAATAGAAGAATCTTGCATTTGTAACACATCTCCACCATCCAGAGAGAATGATAAAATGAGAATTTCCATCGTTATCCTTGAGATACCCACGGAAGTTGATCCTCCACTTTCGGAATGGATTTCGAAGTTCAATAATAAGAGGACCGCAGATTATGGTACGGTTTTCAGCAAAATATGCATCGAATGATCCTGAATACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGATGTTCCAAAGAATTTACTC</pcr_primer_p1>
		<pcr_primer_p2>GAGAGTATCATGCTGAAATTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTGATGTTCCAAAGAATTTACTCGGTGGGAAATTGCGTTTCCATCCTGAAAAAAAAACATTCCTAGTTTTGTAAAGAACTGTCATTTGAAGTTCAAATGTTGTTTGAAGTTCAATTTTGAACTAACACTGAGATATGTGTGGAATTGAGTTGACGTAGTTTCCAAATTTAGAGGATTTCTGTGACGGAGACCTCTGTATCTATGCTCCACGACTTCTCCGTTTCCAATTTTAATTTCAGCATGATACTCTC</canonical_amplicon>
		<polymorphic_amplicon>TTGATGTTCCAAAGAATTTACTCGGTGGGAAATTGCGTTTCCATCCTGAAAAAAAAACATTCCTAGTTTTGTAAAGAACTGTCATTTGAAGTTCAAATGTTGTRTGAAGTTCAATTTTGAACTAACACTGAGATATGTGTGGAATTGAGTTGACGTAGTTTCCAAATTTAGAGGATTTCTGTGACGGAGACCTCTGTATCTATGCTCCACGACTTCTCCGTTTCCAATTTTAATTTCAGCATGATACTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25236</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>329603</contig_pos>
        <strand>+</strand>
        <context>TCAGAAGCTT[A/G]GTTCAAGTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGATATGAGGAATGATCTTTAAATGATGCATGCATTATTCAGAAGCTT</left_flank>
        <right_flank>GTTCAAGTTCCGTCTACCAAATTACGTCCCACGGGACCATCAACTATATA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCTAAACAATCTTCAATTACATTTTTCTAGATTGTTTACCACTACACTCACCTCAAAATATCTCTCTGATACTCCACTATGCTTATAATATGTGCACCTAAAATCAGATTGATCTTTTATTTTTCCAGAAGTCACGTTAGCATACCTAATTGATTTCAAAGTGGAATTGGTTTCCACTTTTGATCGAAATGTAAGAACACCTTTTGTTGATAAATGCACATATTCATTCAGTTCGTGGGGCACACAATCGTCTTCGGGACTGAAATTTATAATTGGTTTTTTCTTTTCTTTTTTTTCCTTAATCAACTTCTTATCAGATTCAAAGCTGACGTAAATTTAGAATGCACTGTTTGGAAGGAGCACCAAAGGCACACACGAGCTCAAAGTTTTTCAAAAACTATTGCTCTCTCGATTGTTTGATCTTTCATTACCGAGGAATGATCTTTAAATGATATGAGGAATGATCTTTAAATGATGCATGCATTATTCAGAAGCTTGGTTCAAGTTCCGTCTACCAAATTACGTCCCACGGGACCATCAACTATATAAAATGACCAAAATGAGCTTAAAACATAAATCAGATAAGATTGTTCTTCGATTTTATTATTTTTCGTATCTTTTTTCCTATTCCCAGGAACTGGTTCACCAAATCTAGTACCTCTAGAAAACAAAAAGTCAAAACTCAACAAGAAGATGTTGATTTAGATACTTCCTGTTTTTCTGTTTTTCTTTATATTACACAACCTTATTAATTTCAAAAAAACTTACTCTATTTCGTAGACTCCATCTTCCACATCATAGTTTGCAAAAAATATGAAGGGAAACTTACAATGGTTAGCCAGGAGCGTTCTTGTATCTGAAAGTTACCATCGAGTTTTCAACCATATTGAAAGATCATTATTTTGCAAAAATCCAGCTACTTTTTTCTAAACGCTGTTTCTCTTTTATTAGAAAACTTGATTATATACCTTGCATTGAGTAGGCGTACTCAAACGGGT</canonical>
            <polymorphic>AATCTAAACAATCTTCAATTACATTTTTCTAGATTGTTTACCACTACACTCACCTCAAAATATCTCTCTGATACTCCACTATGCTTATAATATGTGCACCTAAAATCAGATTGATCTTTTATTTTTCCAGAAGTCACGTTAGCATACCTAATTGATTTCAAAGTGGAATTGGTTTCCACTTTTGATCGAAATGTAAGAACACCTTTTGTTGATAAATGCACATATTCATTCAGTTCGTGGGGCACACAATCGTCTTCGGGACTGAAATTTATAATTGGTTTTTTCTTTTCTTTTTTTTCCTTAATCAACTTCTTATCAGATTCAAAGCTGACGTAAATTTAGAATGCACTGTTTGGAAGGAGCACCAAAGGCACACACGAGCTCAAAGTTTTTCAAAAACTATTGCTCTCTCGATTGTTTGATCTTTCATTACCGAGGAATGATCTTTAAATGATATGAGGAATGATCTTTAAATGATGCATGCATTATTCAGAAGCTTRGTTCAAGTTCCGTCTACCAAATTACGTCCCACGGGACCATCAACTATATAAAATGACCAAAATGAGCTTAAAACATAAATCAGATAAGATTGTTCTTCGATTTTATTATTTTTCGTATCTTTTTTCCTATTCCCAGGAACTGGTTCACCAAATCTAGTACCTCTAGAAAACAAAAAGTCAAAACTCAACAAGAAGATGTTGATTTAGATACTTCCTGTTTTTCTGTTTTTCTTTATATTACACAACCTTATTAATTTCAAAAAAACTTACTCTATTTCGTAGACTCCATCTTCCACATCATAGTTTGCAAAAAATATGAAGGGAAACTTACAATGGTTAGCCAGGAGCGTTCTTGTATCTGAAAGTTACCATCGAGTTTTCAACCATATTGAAAGATCATTATTTTGCAAAAATCCAGCTACTTTTTTCTAAACGCTGTTTCTCTTTTATTAGAAAACTTGATTATATACCTTGCATTGAGTAGGCGTACTCAAACGGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGTAAATTTAGAATGCACTGTT</pcr_primer_p1>
		<pcr_primer_p2>TATGTTTTAAGCTCATTTTGGTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACGTAAATTTAGAATGCACTGTTTGGAAGGAGCACCAAAGGCACACACGAGCTCAAAGTTTTTCAAAAACTATTGCTCTCTCGATTGTTTGATCTTTCATTACCGAGGAATGATCTTTAAATGATATGAGGAATGATCTTTAAATGATGCATGCATTATTCAGAAGCTTGGTTCAAGTTCCGTCTACCAAATTACGTCCCACGGGACCATCAACTATATAAAATGACCAAAATGAGCTTAAAACATA</canonical_amplicon>
		<polymorphic_amplicon>ACGTAAATTTAGAATGCACTGTTTGGAAGGAGCACCAAAGGCACACACGAGCTCAAAGTTTTTCAAAAACTATTGCTCTCTCGATTGTTTGATCTTTCATTACCGAGGAATGATCTTTAAATGATATGAGGAATGATCTTTAAATGATGCATGCATTATTCAGAAGCTTRGTTCAAGTTCCGTCTACCAAATTACGTCCCACGGGACCATCAACTATATAAAATGACCAAAATGAGCTTAAAACATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25237</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>329716</contig_pos>
        <strand>+</strand>
        <context>TTATTATTTT[C/T]CGTATCTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAGCTTAAAACATAAATCAGATAAGATTGTTCTTCGATTTTATTATTTT</left_flank>
        <right_flank>CGTATCTTTTTTCCTATTCCCAGGAACTGGTTCACCAAATCTAGTACCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTTTTATTTTTCCAGAAGTCACGTTAGCATACCTAATTGATTTCAAAGTGGAATTGGTTTCCACTTTTGATCGAAATGTAAGAACACCTTTTGTTGATAAATGCACATATTCATTCAGTTCGTGGGGCACACAATCGTCTTCGGGACTGAAATTTATAATTGGTTTTTTCTTTTCTTTTTTTTCCTTAATCAACTTCTTATCAGATTCAAAGCTGACGTAAATTTAGAATGCACTGTTTGGAAGGAGCACCAAAGGCACACACGAGCTCAAAGTTTTTCAAAAACTATTGCTCTCTCGATTGTTTGATCTTTCATTACCGAGGAATGATCTTTAAATGATATGAGGAATGATCTTTAAATGATGCATGCATTATTCAGAAGCTTGGTTCAAGTTCCGTCTACCAAATTACGTCCCACGGGACCATCAACTATATAAAATGACCAAAATGAGCTTAAAACATAAATCAGATAAGATTGTTCTTCGATTTTATTATTTTTCGTATCTTTTTTCCTATTCCCAGGAACTGGTTCACCAAATCTAGTACCTCTAGAAAACAAAAAGTCAAAACTCAACAAGAAGATGTTGATTTAGATACTTCCTGTTTTTCTGTTTTTCTTTATATTACACAACCTTATTAATTTCAAAAAAACTTACTCTATTTCGTAGACTCCATCTTCCACATCATAGTTTGCAAAAAATATGAAGGGAAACTTACAATGGTTAGCCAGGAGCGTTCTTGTATCTGAAAGTTACCATCGAGTTTTCAACCATATTGAAAGATCATTATTTTGCAAAAATCCAGCTACTTTTTTCTAAACGCTGTTTCTCTTTTATTAGAAAACTTGATTATATACCTTGCATTGAGTAGGCGTACTCAAACGGGTAACTGGGTCCAACCATCGGGTTGAAATTCGCATTTTTAGTGATACCAACAGTGATCACAATAATTAGAAAAGCAATGAGCAGAAATATAAAACTTGGGAAAAAATGTTGAAAA</canonical>
            <polymorphic>ATCTTTTATTTTTCCAGAAGTCACGTTAGCATACCTAATTGATTTCAAAGTGGAATTGGTTTCCACTTTTGATCGAAATGTAAGAACACCTTTTGTTGATAAATGCACATATTCATTCAGTTCGTGGGGCACACAATCGTCTTCGGGACTGAAATTTATAATTGGTTTTTTCTTTTCTTTTTTTTCCTTAATCAACTTCTTATCAGATTCAAAGCTGACGTAAATTTAGAATGCACTGTTTGGAAGGAGCACCAAAGGCACACACGAGCTCAAAGTTTTTCAAAAACTATTGCTCTCTCGATTGTTTGATCTTTCATTACCGAGGAATGATCTTTAAATGATATGAGGAATGATCTTTAAATGATGCATGCATTATTCAGAAGCTTGGTTCAAGTTCCGTCTACCAAATTACGTCCCACGGGACCATCAACTATATAAAATGACCAAAATGAGCTTAAAACATAAATCAGATAAGATTGTTCTTCGATTTTATTATTTTYCGTATCTTTTTTCCTATTCCCAGGAACTGGTTCACCAAATCTAGTACCTCTAGAAAACAAAAAGTCAAAACTCAACAAGAAGATGTTGATTTAGATACTTCCTGTTTTTCTGTTTTTCTTTATATTACACAACCTTATTAATTTCAAAAAAACTTACTCTATTTCGTAGACTCCATCTTCCACATCATAGTTTGCAAAAAATATGAAGGGAAACTTACAATGGTTAGCCAGGAGCGTTCTTGTATCTGAAAGTTACCATCGAGTTTTCAACCATATTGAAAGATCATTATTTTGCAAAAATCCAGCTACTTTTTTCTAAACGCTGTTTCTCTTTTATTAGAAAACTTGATTATATACCTTGCATTGAGTAGGCGTACTCAAACGGGTAACTGGGTCCAACCATCGGGTTGAAATTCGCATTTTTAGTGATACCAACAGTGATCACAATAATTAGAAAAGCAATGAGCAGAAATATAAAACTTGGGAAAAAATGTTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCAAAATGAGCTTAAAACATA</pcr_primer_p1>
		<pcr_primer_p2>ACTATGATGTGGAAGATGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACCAAAATGAGCTTAAAACATAAATCAGATAAGATTGTTCTTCGATTTTATTATTTTTCGTATCTTTTTTCCTATTCCCAGGAACTGGTTCACCAAATCTAGTACCTCTAGAAAACAAAAAGTCAAAACTCAACAAGAAGATGTTGATTTAGATACTTCCTGTTTTTCTGTTTTTCTTTATATTACACAACCTTATTAATTTCAAAAAAACTTACTCTATTTCGTAGACTCCATCTTCCACATCATAGT</canonical_amplicon>
		<polymorphic_amplicon>GACCAAAATGAGCTTAAAACATAAATCAGATAAGATTGTTCTTCGATTTTATTATTTTYCGTATCTTTTTTCCTATTCCCAGGAACTGGTTCACCAAATCTAGTACCTCTAGAAAACAAAAAGTCAAAACTCAACAAGAAGATGTTGATTTAGATACTTCCTGTTTTTCTGTTTTTCTTTATATTACACAACCTTATTAATTTCAAAAAAACTTACTCTATTTCGTAGACTCCATCTTCCACATCATAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25238</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>330904</contig_pos>
        <strand>+</strand>
        <context>CCGTTGAACT[A/G]ACTATGAGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAATTCACGTTTAGTCTATCCTCACGGCTCAATATGGTTCCGTTGAACT</left_flank>
        <right_flank>ACTATGAGATCTCTGGAGATTTGCTTGCAATCTCAATCGATAAGTTAACT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTAATGAACAAAGTTGAGCATGATGGAAATATGTATGGGAACCACTTGTTGCTTTTTGAGTAAGTTCTCAGCACATTTTGGTGTGAGAAAGGAACGTTGTGACAACAAATCGAATATTGTGAATTCAAGCGAAACCCCTGTTCTTGGTAACTTTCTAATACATTTTCATGCAGTTTCATTAAAGAAAAGGGAAAAGAAACATTGTTTTTGTCTGCCATCTGTTTATTGAAGGAACTAAAAACTTCCAAAAATGTAGATCAATGGATTTCCTTTTATCCATTGGCGTTTGAACTGTTTCCGTGTGCACCGTTTTCATGATTTATATTTTTCATTTTCTGGTTTATGCGAATGCTCTTCGTCATCTATTTCTTAGCATAATCTACCCGCTTATTAACCAAAATACTTGAAATCGAACCAATTTCGGTCAGGTGATAGTCAAACTTGTAGACGAATTCACGTTTAGTCTATCCTCACGGCTCAATATGGTTCCGTTGAACTGACTATGAGATCTCTGGAGATTTGCTTGCAATCTCAATCGATAAGTTAACTCCAGATTTTCTTTGTTTTCCAAACTGCTAGCCAAAAAGTATGACGAGAATTTAGACATTTTAGAATTTACAAGGTACAATTATTGGTGTGTTTCAGTTTTCCCAGTTCTTTGAAACAAACTTTTTTTTGAACTAGAGTTTACTTGAGTCAAATTCAGCAGACTTTCTTCCATTTATATATAGGAGGATACATTTATTAGTTTCTCATCTGTTCACTTATTCTGAGAATATCCCCTGTTTTGTTTCTCGCCATTTCAGAATAACAATTTTCGGAGGTCTCCAAGGATATCCAATTTCTGTGTAATTGTCGCCTCCCCTATATCTTCCTTTCCTTTTATTAGCCAATTGACTATCTCTTCTCATTACTGAATTTTTTCAAAGATCCCCAATCGAAGTAATGTCAGATAATATCAGTTTAACAGTTATTCAAACCAATGTAAGTTCCTCCTGG</canonical>
            <polymorphic>GTTAATGAACAAAGTTGAGCATGATGGAAATATGTATGGGAACCACTTGTTGCTTTTTGAGTAAGTTCTCAGCACATTTTGGTGTGAGAAAGGAACGTTGTGACAACAAATCGAATATTGTGAATTCAAGCGAAACCCCTGTTCTTGGTAACTTTCTAATACATTTTCATGCAGTTTCATTAAAGAAAAGGGAAAAGAAACATTGTTTTTGTCTGCCATCTGTTTATTGAAGGAACTAAAAACTTCCAAAAATGTAGATCAATGGATTTCCTTTTATCCATTGGCGTTTGAACTGTTTCCGTGTGCACCGTTTTCATGATTTATATTTTTCATTTTCTGGTTTATGCGAATGCTCTTCGTCATCTATTTCTTAGCATAATCTACCCGCTTATTAACCAAAATACTTGAAATCGAACCAATTTCGGTCAGGTGATAGTCAAACTTGTAGACGAATTCACGTTTAGTCTATCCTCACGGCTCAATATGGTTCCGTTGAACTRACTATGAGATCTCTGGAGATTTGCTTGCAATCTCAATCGATAAGTTAACTCCAGATTTTCTTTGTTTTCCAAACTGCTAGCCAAAAAGTATGACGAGAATTTAGACATTTTAGAATTTACAAGGTACAATTATTGGTGTGTTTCAGTTTTCCCAGTTCTTTGAAACAAACTTTTTTTTGAACTAGAGTTTACTTGAGTCAAATTCAGCAGACTTTCTTCCATTTATATATAGGAGGATACATTTATTAGTTTCTCATCTGTTCACTTATTCTGAGAATATCCCCTGTTTTGTTTCTCGCCATTTCAGAATAACAATTTTCGGAGGTCTCCAAGGATATCCAATTTCTGTGTAATTGTCGCCTCCCCTATATCTTCCTTTCCTTTTATTAGCCAATTGACTATCTCTTCTCATTACTGAATTTTTTCAAAGATCCCCAATCGAAGTAATGTCAGATAATATCAGTTTAACAGTTATTCAAACCAATGTAAGTTCCTCCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCGTTTTCATGATTTATATTT</pcr_primer_p1>
		<pcr_primer_p2>ATCTGGAGTTAACTTATCGATTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CACCGTTTTCATGATTTATATTTTTCATTTTCTGGTTTATGCGAATGCTCTTCGTCATCTATTTCTTAGCATAATCTACCCGCTTATTAACCAAAATACTTGAAATCGAACCAATTTCGGTCAGGTGATAGTCAAACTTGTAGACGAATTCACGTTTAGTCTATCCTCACGGCTCAATATGGTTCCGTTGAACTGACTATGAGATCTCTGGAGATTTGCTTGCAATCTCAATCGATAAGTTAACTCCAGAT</canonical_amplicon>
		<polymorphic_amplicon>CACCGTTTTCATGATTTATATTTTTCATTTTCTGGTTTATGCGAATGCTCTTCGTCATCTATTTCTTAGCATAATCTACCCGCTTATTAACCAAAATACTTGAAATCGAACCAATTTCGGTCAGGTGATAGTCAAACTTGTAGACGAATTCACGTTTAGTCTATCCTCACGGCTCAATATGGTTCCGTTGAACTRACTATGAGATCTCTGGAGATTTGCTTGCAATCTCAATCGATAAGTTAACTCCAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25239</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>331130</contig_pos>
        <strand>+</strand>
        <context>CTTCCATTTA[A/T]ATATAGGAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGAACTAGAGTTTACTTGAGTCAAATTCAGCAGACTTTCTTCCATTTA</left_flank>
        <right_flank>ATATAGGAGGATACATTTATTAGTTTCTCATCTGTTCACTTATTCTGAGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAGGAACTAAAAACTTCCAAAAATGTAGATCAATGGATTTCCTTTTATCCATTGGCGTTTGAACTGTTTCCGTGTGCACCGTTTTCATGATTTATATTTTTCATTTTCTGGTTTATGCGAATGCTCTTCGTCATCTATTTCTTAGCATAATCTACCCGCTTATTAACCAAAATACTTGAAATCGAACCAATTTCGGTCAGGTGATAGTCAAACTTGTAGACGAATTCACGTTTAGTCTATCCTCACGGCTCAATATGGTTCCGTTGAACTGACTATGAGATCTCTGGAGATTTGCTTGCAATCTCAATCGATAAGTTAACTCCAGATTTTCTTTGTTTTCCAAACTGCTAGCCAAAAAGTATGACGAGAATTTAGACATTTTAGAATTTACAAGGTACAATTATTGGTGTGTTTCAGTTTTCCCAGTTCTTTGAAACAAACTTTTTTTTGAACTAGAGTTTACTTGAGTCAAATTCAGCAGACTTTCTTCCATTTATATATAGGAGGATACATTTATTAGTTTCTCATCTGTTCACTTATTCTGAGAATATCCCCTGTTTTGTTTCTCGCCATTTCAGAATAACAATTTTCGGAGGTCTCCAAGGATATCCAATTTCTGTGTAATTGTCGCCTCCCCTATATCTTCCTTTCCTTTTATTAGCCAATTGACTATCTCTTCTCATTACTGAATTTTTTCAAAGATCCCCAATCGAAGTAATGTCAGATAATATCAGTTTAACAGTTATTCAAACCAATGTAAGTTCCTCCTGGAATGTCTATGACAAGTTTCTTTTCTTCCAGACTTTAAATGACATAATTATCTTCCCAATATACTTTTATTTGTATTTATGTATCACATTGTTTAGTCAGATATCTGTTTTACTTCTCGTCATATTTAAGACTCCAGTCTTGTTTAAAGATTTTCGAATATTTCTGATAAACTCTTCGTCACTCCAGATTGCAATGTGCTTGGTGGTTGTTTTCACACAAGTCAGGT</canonical>
            <polymorphic>TTGAAGGAACTAAAAACTTCCAAAAATGTAGATCAATGGATTTCCTTTTATCCATTGGCGTTTGAACTGTTTCCGTGTGCACCGTTTTCATGATTTATATTTTTCATTTTCTGGTTTATGCGAATGCTCTTCGTCATCTATTTCTTAGCATAATCTACCCGCTTATTAACCAAAATACTTGAAATCGAACCAATTTCGGTCAGGTGATAGTCAAACTTGTAGACGAATTCACGTTTAGTCTATCCTCACGGCTCAATATGGTTCCGTTGAACTGACTATGAGATCTCTGGAGATTTGCTTGCAATCTCAATCGATAAGTTAACTCCAGATTTTCTTTGTTTTCCAAACTGCTAGCCAAAAAGTATGACGAGAATTTAGACATTTTAGAATTTACAAGGTACAATTATTGGTGTGTTTCAGTTTTCCCAGTTCTTTGAAACAAACTTTTTTTTGAACTAGAGTTTACTTGAGTCAAATTCAGCAGACTTTCTTCCATTTAWATATAGGAGGATACATTTATTAGTTTCTCATCTGTTCACTTATTCTGAGAATATCCCCTGTTTTGTTTCTCGCCATTTCAGAATAACAATTTTCGGAGGTCTCCAAGGATATCCAATTTCTGTGTAATTGTCGCCTCCCCTATATCTTCCTTTCCTTTTATTAGCCAATTGACTATCTCTTCTCATTACTGAATTTTTTCAAAGATCCCCAATCGAAGTAATGTCAGATAATATCAGTTTAACAGTTATTCAAACCAATGTAAGTTCCTCCTGGAATGTCTATGACAAGTTTCTTTTCTTCCAGACTTTAAATGACATAATTATCTTCCCAATATACTTTTATTTGTATTTATGTATCACATTGTTTAGTCAGATATCTGTTTTACTTCTCGTCATATTTAAGACTCCAGTCTTGTTTAAAGATTTTCGAATATTTCTGATAAACTCTTCGTCACTCCAGATTGCAATGTGCTTGGTGGTTGTTTTCACACAAGTCAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTGCTAGCCAAAAAGTATGAC</pcr_primer_p1>
		<pcr_primer_p2>CCGAAAATTGTTATTCTGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTGCTAGCCAAAAAGTATGACGAGAATTTAGACATTTTAGAATTTACAAGGTACAATTATTGGTGTGTTTCAGTTTTCCCAGTTCTTTGAAACAAACTTTTTTTTGAACTAGAGTTTACTTGAGTCAAATTCAGCAGACTTTCTTCCATTTATATATAGGAGGATACATTTATTAGTTTCTCATCTGTTCACTTATTCTGAGAATATCCCCTGTTTTGTTTCTCGCCATTTCAGAATAACAATTTTCGG</canonical_amplicon>
		<polymorphic_amplicon>ACTGCTAGCCAAAAAGTATGACGAGAATTTAGACATTTTAGAATTTACAAGGTACAATTATTGGTGTGTTTCAGTTTTCCCAGTTCTTTGAAACAAACTTTTTTTTGAACTAGAGTTTACTTGAGTCAAATTCAGCAGACTTTCTTCCATTTAWATATAGGAGGATACATTTATTAGTTTCTCATCTGTTCACTTATTCTGAGAATATCCCCTGTTTTGTTTCTCGCCATTTCAGAATAACAATTTTCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25240</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>474933</contig_pos>
        <strand>+</strand>
        <context>TGTGTTGCAG[A/C]YTTCTTGTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCATTTTTATTTCTATAAAACCAGTTATCTTGTTTCCTCTGTGTTGCAG</left_flank>
        <right_flank>CTTCTTGTCGCCTACACGAAGAAACAATTTCTCGACAACTATTCGACTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTCCCTAGCTTTTAACTTTAAGCTTATTTATCTCGGTTTTTGATATAAAAAGTTTGTCAACTAATAAATTTTTGATCATAATAGCATAAACATTATATCGCACATTTTAGATATCTTTTACAGGAAGCGGGATAATTGAGCTCAAACTCTGTTTCCTGAACTTTTGTTTCATCCTATAGGTTTTCGAAAGCTTTTTATTTTCTTTCAACCCATCCATCTTTAATTTCCCTAAAAAAACCATAAAAAAGATTGACAGTCACATTATTACCTTTCCGAAACCCATAATGATAAAACAACGACTTCCGTAATTCTCCCCATCAACTTTCCTCTCTCTCTCACTGTAATCCCAAGAAATTGCCTAAATCCGTTGAGTAATTCGATTAAAGTCACATCAAGCGCAACGACACTTATCCCTCTCCTCCTGCCGATTTCATTCAATTACCCATTCATCATTTTTATTTCTATAAAACCAGTTATCTTGTTTCCTCTGTGTTGCAGCCTTCTTGTCGCCTACACGAAGAAACAATTTCTCGACAACTATTCGACTACGGTATTCGACAATTGGGCGGTTTCGGTGCACATTGATCACAAAAGTTATGCGGTCAGCTTGTTTGATACTGCTGGTCAGGTATGGACTTTCAATTTTTTCTTCAAATGCAATTCAGTGACCGATATTTTTTCGGATTACGATTACGAACACCTTCCATTTAATTAGATGAGCAAACAGAATTTCTTTCAAACAATTCGTGTGGAATTTAGGTGTGAAAGAAAAGAGAAACAGCTTTGAATTGTTTGCTTTCAATTAACTTTTCGAGTTTTCTCTCTTCCCGAATTGGGTCAATCAAGCCGTTCTAATAAAACCGAAATGTACTTTTTCAGGGAAGTTACGAAAAGATTCGATGTCTGAGCTATCCACACACAAATATTTTTCTTGTATGCTTTTCAATGACCGATAAGAATACATTGGAGTCATGCAGAACTATTTGGATACCAGAAATC</canonical>
            <polymorphic>GGTCCCTAGCTTTTAACTTTAAGCTTATTTATCTCGGTTTTTGATATAAAAAGTTTGTCAACTAATAAATTTTTGATCATAATAGCATAAACATTATATCGCACATTTTAGATATCTTTTACAGGAAGCGGGATAATTGAGCTCAAACTCTGTTTCCTGAACTTTTGTTTCATCCTATAGGTTTTCGAAAGCTTTTTATTTTCTTTCAACCCATCCATCTTTAATTTCCCTAAAAAAACCATAAAAAAGATTGACAGTCACATTATTACCTTTCCGAAACCCATAATGATAAAACAACGACTTCCGTAATTCTCCCCATCAACTTTCCTCTCTCTCTCACTGTAATCCCAAGAAATTGCCTAAATCCGTTGAGTAATTCGATTAAAGTCACATCAAGCGCAACGACACTTATCCCTCTCCTCCTGCCGATTTCATTCAATTACCCATTCATCATTTTTATTTCTATAAAACCAGTTATCTTGTTTCCTCTGTGTTGCAGMCTTCTTGTCGCCTACACGAAGAAACAATTTCTCGACAACTATTCGACTACGGTATTCGACAATTGGGCGGTTTCGGTGCACATTGATCACAAAAGTTATGCGGTCAGCTTGTTTGATACTGCTGGTCAGGTATGGACTTTCAATTTTTTCTTCAAATGCAATTCAGTGACCGATATTTTTTCGGATTACGATTACGAACACCTTCCATTTAATTAGATGAGCAAACAGAATTTCTTTCAAACAATTCGTGTGGAATTTAGGTGTGAAAGAAAAGAGAAACAGCTTTGAATTGTTTGCTTTCAATTAACTTTTCGAGTTTTCTCTCTTCCCGAATTGGGTCAATCAAGCCGTTCTAATAAAACCGAAATGTACTTTTTCAGGGAAGTTACGAAAAGATTCGATGTCTGAGCTATCCACACACAAATATTTTTCTTGTATGCTTTTCAATGACCGATAAGAATACATTGGAGTCATGCAGAACTATTTGGATACCAGAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>308 175 118 108 91 65 62 50 14 9</canonical_bands>
                <polymorphic_bands>416 175 118 91 65 62 50 14 9</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTCGATTAAAGTCACATCAAG</pcr_primer_p1>
		<pcr_primer_p2>AGCAGTATCAAACAAGCTGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTCGATTAAAGTCACATCAAGCGCAACGACACTTATCCCTCTCCTCCTGCCGATTTCATTCAATTACCCATTCATCATTTTTATTTCTATAAAACCAGTTATCTTGTTTCCTCTGTGTTGCAGCCTTCTTGTCGCCTACACGAAGAAACAATTTCTCGACAACTATTCGACTACGGTATTCGACAATTGGGCGGTTTCGGTGCACATTGATCACAAAAGTTATGCGGTCAGCTTGTTTGATACTGCT</canonical_amplicon>
		<polymorphic_amplicon>AATTCGATTAAAGTCACATCAAGCGCAACGACACTTATCCCTCTCCTCCTGCCGATTTCATTCAATTACCCATTCATCATTTTTATTTCTATAAAACCAGTTATCTTGTTTCCTCTGTGTTGCAGMCTTCTTGTCGCCTACACGAAGAAACAATTTCTCGACAACTATTCGACTACGGTATTCGACAATTGGGCGGTTTCGGTGCACATTGATCACAAAAGTTATGCGGTCAGCTTGTTTGATACTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25241</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>474934</contig_pos>
        <strand>+</strand>
        <context>GTGTTGCAGM[C/T]TTCTTGTCGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATTTTTATTTCTATAAAACCAGTTATCTTGTTTCCTCTGTGTTGCAGC</left_flank>
        <right_flank>TTCTTGTCGCCTACACGAAGAAACAATTTCTCGACAACTATTCGACTACG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCCCTAGCTTTTAACTTTAAGCTTATTTATCTCGGTTTTTGATATAAAAAGTTTGTCAACTAATAAATTTTTGATCATAATAGCATAAACATTATATCGCACATTTTAGATATCTTTTACAGGAAGCGGGATAATTGAGCTCAAACTCTGTTTCCTGAACTTTTGTTTCATCCTATAGGTTTTCGAAAGCTTTTTATTTTCTTTCAACCCATCCATCTTTAATTTCCCTAAAAAAACCATAAAAAAGATTGACAGTCACATTATTACCTTTCCGAAACCCATAATGATAAAACAACGACTTCCGTAATTCTCCCCATCAACTTTCCTCTCTCTCTCACTGTAATCCCAAGAAATTGCCTAAATCCGTTGAGTAATTCGATTAAAGTCACATCAAGCGCAACGACACTTATCCCTCTCCTCCTGCCGATTTCATTCAATTACCCATTCATCATTTTTATTTCTATAAAACCAGTTATCTTGTTTCCTCTGTGTTGCAGCCTTCTTGTCGCCTACACGAAGAAACAATTTCTCGACAACTATTCGACTACGGTATTCGACAATTGGGCGGTTTCGGTGCACATTGATCACAAAAGTTATGCGGTCAGCTTGTTTGATACTGCTGGTCAGGTATGGACTTTCAATTTTTTCTTCAAATGCAATTCAGTGACCGATATTTTTTCGGATTACGATTACGAACACCTTCCATTTAATTAGATGAGCAAACAGAATTTCTTTCAAACAATTCGTGTGGAATTTAGGTGTGAAAGAAAAGAGAAACAGCTTTGAATTGTTTGCTTTCAATTAACTTTTCGAGTTTTCTCTCTTCCCGAATTGGGTCAATCAAGCCGTTCTAATAAAACCGAAATGTACTTTTTCAGGGAAGTTACGAAAAGATTCGATGTCTGAGCTATCCACACACAAATATTTTTCTTGTATGCTTTTCAATGACCGATAAGAATACATTGGAGTCATGCAGAACTATTTGGATACCAGAAATCA</canonical>
            <polymorphic>GTCCCTAGCTTTTAACTTTAAGCTTATTTATCTCGGTTTTTGATATAAAAAGTTTGTCAACTAATAAATTTTTGATCATAATAGCATAAACATTATATCGCACATTTTAGATATCTTTTACAGGAAGCGGGATAATTGAGCTCAAACTCTGTTTCCTGAACTTTTGTTTCATCCTATAGGTTTTCGAAAGCTTTTTATTTTCTTTCAACCCATCCATCTTTAATTTCCCTAAAAAAACCATAAAAAAGATTGACAGTCACATTATTACCTTTCCGAAACCCATAATGATAAAACAACGACTTCCGTAATTCTCCCCATCAACTTTCCTCTCTCTCTCACTGTAATCCCAAGAAATTGCCTAAATCCGTTGAGTAATTCGATTAAAGTCACATCAAGCGCAACGACACTTATCCCTCTCCTCCTGCCGATTTCATTCAATTACCCATTCATCATTTTTATTTCTATAAAACCAGTTATCTTGTTTCCTCTGTGTTGCAGCYTTCTTGTCGCCTACACGAAGAAACAATTTCTCGACAACTATTCGACTACGGTATTCGACAATTGGGCGGTTTCGGTGCACATTGATCACAAAAGTTATGCGGTCAGCTTGTTTGATACTGCTGGTCAGGTATGGACTTTCAATTTTTTCTTCAAATGCAATTCAGTGACCGATATTTTTTCGGATTACGATTACGAACACCTTCCATTTAATTAGATGAGCAAACAGAATTTCTTTCAAACAATTCGTGTGGAATTTAGGTGTGAAAGAAAAGAGAAACAGCTTTGAATTGTTTGCTTTCAATTAACTTTTCGAGTTTTCTCTCTTCCCGAATTGGGTCAATCAAGCCGTTCTAATAAAACCGAAATGTACTTTTTCAGGGAAGTTACGAAAAGATTCGATGTCTGAGCTATCCACACACAAATATTTTTCTTGTATGCTTTTCAATGACCGATAAGAATACATTGGAGTCATGCAGAACTATTTGGATACCAGAAATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>308 175 118 108 92 65 62 50 14 8</canonical_bands>
                <polymorphic_bands>416 175 118 92 65 62 50 14 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTCGATTAAAGTCACATCAAG</pcr_primer_p1>
		<pcr_primer_p2>AGCAGTATCAAACAAGCTGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTCGATTAAAGTCACATCAAGCGCAACGACACTTATCCCTCTCCTCCTGCCGATTTCATTCAATTACCCATTCATCATTTTTATTTCTATAAAACCAGTTATCTTGTTTCCTCTGTGTTGCAGCCTTCTTGTCGCCTACACGAAGAAACAATTTCTCGACAACTATTCGACTACGGTATTCGACAATTGGGCGGTTTCGGTGCACATTGATCACAAAAGTTATGCGGTCAGCTTGTTTGATACTGCT</canonical_amplicon>
		<polymorphic_amplicon>AATTCGATTAAAGTCACATCAAGCGCAACGACACTTATCCCTCTCCTCCTGCCGATTTCATTCAATTACCCATTCATCATTTTTATTTCTATAAAACCAGTTATCTTGTTTCCTCTGTGTTGCAGCYTTCTTGTCGCCTACACGAAGAAACAATTTCTCGACAACTATTCGACTACGGTATTCGACAATTGGGCGGTTTCGGTGCACATTGATCACAAAAGTTATGCGGTCAGCTTGTTTGATACTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25242</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>535701</contig_pos>
        <strand>+</strand>
        <context>GCGCCACTTC[C/G]GTATACTACG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAAACTGACTTGTTATTGTTGCCCAATTCTAATCCATCCGGCGCCACTTC</left_flank>
        <right_flank>GTATACTACGAGCTCCTGTGGCTCCTACCTATTTCTCTCCGCGCACCTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATATAAGAGCTCAAAGTTGACGACTTGGGGGCATTGTATTTGAGTGCTTGCGGTATGTTCATTATTGGATTACGGTAGAACATTTCTGATTCCGATATTCCGAGTTCCGAGAAACATATTTTATACCGGATTTCGCTTCACAAAAGAGTCATTCTGGACATTTCTGGTACTCACGTATCCTTCATGTTTTACTACAGCAAGGGTTCATGAGATGAAGAATACATATATCTTCACTGGTTTTCTACGTCCCTGATTGCTCAACTAAAACTATGTAGGTTTATGTGAACAGTTATTTGTGATAAATCTAGTTTCGATGTCGTTGAGCAAACAAAGTTTTGAGAAAAAATAGATCTTCTCCAGTTGTTAATACACCTTATTTTATTTGCGAATTAAGGTGACCAGATGTATTCAACCTCTCAATAAACTATTCCAAAATAGTGTTTTTCTTAAACTGACTTGTTATTGTTGCCCAATTCTAATCCATCCGGCGCCACTTCGGTATACTACGAGCTCCTGTGGCTCCTACCTATTTCTCTCCGCGCACCTTCATCATTTTGTCTTTCGCCCAATGTCAACAGAGACCGTTTTTTCTCATCTCCCTGCTTGCTCGTTTTGTGTTCTTTCTCTTTGACAGTGCAGCTTCTTCACCGATCGACGGATCACTTTCGTTGTCTAGAATCTCTCTGATTCTTGTACTTTTTCACCAAAAGAAGATCCTGCGCAGTTCGTTTTTTTGTGGGCGGAGTCTACATTGGTACAGTTCATTTGTCAGAGAGAGACTCGACAATCTTGTGTCTCTTTTTCTCTTCTCTACACTTTTATAGATGTTTTCATCCTCTCTTAAATCGATCTTAAAATTTTCAGAACTTGACGGCAATTCATTACGCGCGGCTCCGCCACAAGAACGGCATAAGGCGGTTATGGTGAATTGTTGAAATGAATTGGTCCAGATGTACTTTTGTACTCTTTTCTCTCTTCATAGTTTTAAATGCAAAAAC</canonical>
            <polymorphic>CGATATAAGAGCTCAAAGTTGACGACTTGGGGGCATTGTATTTGAGTGCTTGCGGTATGTTCATTATTGGATTACGGTAGAACATTTCTGATTCCGATATTCCGAGTTCCGAGAAACATATTTTATACCGGATTTCGCTTCACAAAAGAGTCATTCTGGACATTTCTGGTACTCACGTATCCTTCATGTTTTACTACAGCAAGGGTTCATGAGATGAAGAATACATATATCTTCACTGGTTTTCTACGTCCCTGATTGCTCAACTAAAACTATGTAGGTTTATGTGAACAGTTATTTGTGATAAATCTAGTTTCGATGTCGTTGAGCAAACAAAGTTTTGAGAAAAAATAGATCTTCTCCAGTTGTTAATACACCTTATTTTATTTGCGAATTAAGGTGACCAGATGTATTCAACCTCTCAATAAACTATTCCAAAATAGTGTTTTTCTTAAACTGACTTGTTATTGTTGCCCAATTCTAATCCATCCGGCGCCACTTCSGTATACTACGAGCTCCTGTGGCTCCTACCTATTTCTCTCCGCGCACCTTCATCATTTTGTCTTTCGCCCAATGTCAACAGAGACCGTTTTTTCTCATCTCCCTGCTTGCTCGTTTTGTGTTCTTTCTCTTTGACAGTGCAGCTTCTTCACCGATCGACGGATCACTTTCGTTGTCTAGAATCTCTCTGATTCTTGTACTTTTTCACCAAAAGAAGATCCTGCGCAGTTCGTTTTTTTGTGGGCGGAGTCTACATTGGTACAGTTCATTTGTCAGAGAGAGACTCGACAATCTTGTGTCTCTTTTTCTCTTCTCTACACTTTTATAGATGTTTTCATCCTCTCTTAAATCGATCTTAAAATTTTCAGAACTTGACGGCAATTCATTACGCGCGGCTCCGCCACAAGAACGGCATAAGGCGGTTATGGTGAATTGTTGAAATGAATTGGTCCAGATGTACTTTTGTACTCTTTTCTCTCTTCATAGTTTTAAATGCAAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGGTGACCAGATGTATTCAA</pcr_primer_p1>
		<pcr_primer_p2>ACTGTCAAAGAGAAAGAACACAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TAAGGTGACCAGATGTATTCAACCTCTCAATAAACTATTCCAAAATAGTGTTTTTCTTAAACTGACTTGTTATTGTTGCCCAATTCTAATCCATCCGGCGCCACTTCGGTATACTACGAGCTCCTGTGGCTCCTACCTATTTCTCTCCGCGCACCTTCATCATTTTGTCTTTCGCCCAATGTCAACAGAGACCGTTTTTTCTCATCTCCCTGCTTGCTCGTTTTGTGTTCTTTCTCTTTGACAGT</canonical_amplicon>
		<polymorphic_amplicon>TAAGGTGACCAGATGTATTCAACCTCTCAATAAACTATTCCAAAATAGTGTTTTTCTTAAACTGACTTGTTATTGTTGCCCAATTCTAATCCATCCGGCGCCACTTCSGTATACTACGAGCTCCTGTGGCTCCTACCTATTTCTCTCCGCGCACCTTCATCATTTTGTCTTTCGCCCAATGTCAACAGAGACCGTTTTTTCTCATCTCCCTGCTTGCTCGTTTTGTGTTCTTTCTCTTTGACAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25243</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>535768</contig_pos>
        <strand>+</strand>
        <context>TTGTCTTTCG[C/G]CCAATGTCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGTGGCTCCTACCTATTTCTCTCCGCGCACCTTCATCATTTTGTCTTTCG</left_flank>
        <right_flank>CCAATGTCAACAGAGACCGTTTTTTCTCATCTCCCTGCTTGCTCGTTTTG</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGATTACGGTAGAACATTTCTGATTCCGATATTCCGAGTTCCGAGAAACATATTTTATACCGGATTTCGCTTCACAAAAGAGTCATTCTGGACATTTCTGGTACTCACGTATCCTTCATGTTTTACTACAGCAAGGGTTCATGAGATGAAGAATACATATATCTTCACTGGTTTTCTACGTCCCTGATTGCTCAACTAAAACTATGTAGGTTTATGTGAACAGTTATTTGTGATAAATCTAGTTTCGATGTCGTTGAGCAAACAAAGTTTTGAGAAAAAATAGATCTTCTCCAGTTGTTAATACACCTTATTTTATTTGCGAATTAAGGTGACCAGATGTATTCAACCTCTCAATAAACTATTCCAAAATAGTGTTTTTCTTAAACTGACTTGTTATTGTTGCCCAATTCTAATCCATCCGGCGCCACTTCGGTATACTACGAGCTCCTGTGGCTCCTACCTATTTCTCTCCGCGCACCTTCATCATTTTGTCTTTCGCCCAATGTCAACAGAGACCGTTTTTTCTCATCTCCCTGCTTGCTCGTTTTGTGTTCTTTCTCTTTGACAGTGCAGCTTCTTCACCGATCGACGGATCACTTTCGTTGTCTAGAATCTCTCTGATTCTTGTACTTTTTCACCAAAAGAAGATCCTGCGCAGTTCGTTTTTTTGTGGGCGGAGTCTACATTGGTACAGTTCATTTGTCAGAGAGAGACTCGACAATCTTGTGTCTCTTTTTCTCTTCTCTACACTTTTATAGATGTTTTCATCCTCTCTTAAATCGATCTTAAAATTTTCAGAACTTGACGGCAATTCATTACGCGCGGCTCCGCCACAAGAACGGCATAAGGCGGTTATGGTGAATTGTTGAAATGAATTGGTCCAGATGTACTTTTGTACTCTTTTCTCTCTTCATAGTTTTAAATGCAAAAACTCAAAAGACACCGCTGTGTGGATCCTGTGATAAGGATTCATGTCCAGATGTTTCAGGATGTAATTTG</canonical>
            <polymorphic>TGGATTACGGTAGAACATTTCTGATTCCGATATTCCGAGTTCCGAGAAACATATTTTATACCGGATTTCGCTTCACAAAAGAGTCATTCTGGACATTTCTGGTACTCACGTATCCTTCATGTTTTACTACAGCAAGGGTTCATGAGATGAAGAATACATATATCTTCACTGGTTTTCTACGTCCCTGATTGCTCAACTAAAACTATGTAGGTTTATGTGAACAGTTATTTGTGATAAATCTAGTTTCGATGTCGTTGAGCAAACAAAGTTTTGAGAAAAAATAGATCTTCTCCAGTTGTTAATACACCTTATTTTATTTGCGAATTAAGGTGACCAGATGTATTCAACCTCTCAATAAACTATTCCAAAATAGTGTTTTTCTTAAACTGACTTGTTATTGTTGCCCAATTCTAATCCATCCGGCGCCACTTCGGTATACTACGAGCTCCTGTGGCTCCTACCTATTTCTCTCCGCGCACCTTCATCATTTTGTCTTTCGSCCAATGTCAACAGAGACCGTTTTTTCTCATCTCCCTGCTTGCTCGTTTTGTGTTCTTTCTCTTTGACAGTGCAGCTTCTTCACCGATCGACGGATCACTTTCGTTGTCTAGAATCTCTCTGATTCTTGTACTTTTTCACCAAAAGAAGATCCTGCGCAGTTCGTTTTTTTGTGGGCGGAGTCTACATTGGTACAGTTCATTTGTCAGAGAGAGACTCGACAATCTTGTGTCTCTTTTTCTCTTCTCTACACTTTTATAGATGTTTTCATCCTCTCTTAAATCGATCTTAAAATTTTCAGAACTTGACGGCAATTCATTACGCGCGGCTCCGCCACAAGAACGGCATAAGGCGGTTATGGTGAATTGTTGAAATGAATTGGTCCAGATGTACTTTTGTACTCTTTTCTCTCTTCATAGTTTTAAATGCAAAAACTCAAAAGACACCGCTGTGTGGATCCTGTGATAAGGATTCATGTCCAGATGTTTCAGGATGTAATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTGTTGCCCAATTCTAATC</pcr_primer_p1>
		<pcr_primer_p2>TTTGGTGAAAAAGTACAAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTATTGTTGCCCAATTCTAATCCATCCGGCGCCACTTCGGTATACTACGAGCTCCTGTGGCTCCTACCTATTTCTCTCCGCGCACCTTCATCATTTTGTCTTTCGCCCAATGTCAACAGAGACCGTTTTTTCTCATCTCCCTGCTTGCTCGTTTTGTGTTCTTTCTCTTTGACAGTGCAGCTTCTTCACCGATCGACGGATCACTTTCGTTGTCTAGAATCTCTCTGATTCTTGTACTTTTTCACCAAA</canonical_amplicon>
		<polymorphic_amplicon>TTATTGTTGCCCAATTCTAATCCATCCGGCGCCACTTCGGTATACTACGAGCTCCTGTGGCTCCTACCTATTTCTCTCCGCGCACCTTCATCATTTTGTCTTTCGSCCAATGTCAACAGAGACCGTTTTTTCTCATCTCCCTGCTTGCTCGTTTTGTGTTCTTTCTCTTTGACAGTGCAGCTTCTTCACCGATCGACGGATCACTTTCGTTGTCTAGAATCTCTCTGATTCTTGTACTTTTTCACCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25244</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>577475</contig_pos>
        <strand></strand>
        <context>gctgaaaaat[G/A]aataactgag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGCGCTCTGACGCGAATACTGTAGAAGTATCGACGCGCATGCTGAAAAAT</left_flank>
        <right_flank>AATAACTGAGTCGCTACACAGAGAATTTTGCGACCTAAAGAAAAAAAAAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGGACGACGGGAAAAGCAGAGAGACTTCTTCTCACCTGAAGACGTGCCGCCGAACAGAGAAAAGCGAGAGGAGACGAAGAATGAAAAGTGTGTGTGTTTGTTTTGAAAGCAAACTTGCAAATAAACTTCATATATCCGGGAAAAAGTAGAATGTAACTATGTATATTAATTGAGAAAGATACATGAACTTTGGAGCGAGAAATTGATACTTATTCAGTAAAAAAAGAGAGGAGAGCTTATCGCTTAAAGTTTAATTTCTAAAAGAGTTGGGAATACAAGTATTTTATCACTTTTTGATATTTCACAGACAAAGAGGTATATGGGTTTAAAGTTGACGGTTTGGGGATGTGGAGATTCTATTAGAGCGTATACAATACTTTCGCAATATTGAGAGTGTAGCTTCAGCACACGGTGAATTTTTTAGGACGGTGAATTTTCTAATGTAAATGCGCTCTGACGCGAATACTGTAGAAGTATCGACGCGCATGCTGAAAAATGAATAACTGAGTCGCTACACAGAGAATTTTGCGACCTAAAGAAAAAAAAAGGCGCGAAAAAAAAATTTAAAATACGTTCTGGAAAAATCGCAGTGTCAGCACGGTTAACCATCTCGTATAAAAAAAATACACCAATATTCTCTATTCATAGAATTATATTCCATGCTGAATGATTTCAAAAGGATCGATGCAGGAGTGCCAAAACAGTGTTATCTAATGTTTAATTAAAAGTCCAGCCTTTTAGCTTGCACCGGAACAGAGAAAAAATGACTTTTGCTGCCCCTCGAGCGTTGAAAAATCCTCAGATTTCGAATAACCATAAAACCTTCATGAGAAGGGTCCCTCTAATAGAAGTGCCCTCCGAGGTGGACTTGGAAAAAATAGGAGAGTCCCTTCAAAATGTGTTCTTTGAAATTCAAAAGAAAAAAAATTCGAACGTTTTAATAAAATCTGTTCCGGATATTCCTCAATTTCATAGAAACGAAACTCAAAAAATGCTCA</canonical>
            <polymorphic>GTGGGACGACGGGAAAAGCAGAGAGACTTCTTCTCACCTGAAGACGTGCCGCCGAACAGAGAAAAGCGAGAGGAGACGAAGAATGAAAAGTGTGTGTGTTTGTTTTGAAAGCAAACTTGCAAATAAACTTCATATATCCGGGAAAAAGTAGAATGTAACTATGTATATTAATTGAGAAAGATACATGAACTTTGGAGCGAGAAATTGATACTTATTCAGTAAAAAAAGAGAGGAGAGCTTATCGCTTAAAGTTTAATTTCTAAAAGAGTTGGGAATACAAGTATTTTATCACTTTTTGATATTTCACAGACAAAGAGGTATATGGGTTTAAAGTTGACGGTTTGGGGATGTGGAGATTCTATTAGAGCGTATACAATACTTTCGCAATATTGAGAGTGTAGCTTCAGCACACGGTGAATTTTTTAGGACGGTGAATTTTCTAATGTAAATGCGCTCTGACGCGAATACTGTAGAAGTATCGACGCGCATGCTGAAAAATRAATAACTGAGTCGCTACACAGAGAATTTTGCGACCTAAAGAAAAAAAAAGGCGCGAAAAAAAAATTTAAAATACGTTCTGGAAAAATCGCAGTGTCAGCACGGTTAACCATCTCGTATAAAAAAAATACACCAATATTCTCTATTCATAGAATTATATTCCATGCTGAATGATTTCAAAAGGATCGATGCAGGAGTGCCAAAACAGTGTTATCTAATGTTTAATTAAAAGTCCAGCCTTTTAGCTTGCACCGGAACAGAGAAAAAATGACTTTTGCTGCCCCTCGAGCGTTGAAAAATCCTCAGATTTCGAATAACCATAAAACCTTCATGAGAAGGGTCCCTCTAATAGAAGTGCCCTCCGAGGTGGACTTGGAAAAAATAGGAGAGTCCCTTCAAAATGTGTTCTTTGAAATTCAAAAGAAAAAAAATTCGAACGTTTTAATAAAATCTGTTCCGGATATTCCTCAATTTCATAGAAACGAAACTCAAAAAATGCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATGTGGAGATTCTATTAGAGC</pcr_primer_p1>
		<pcr_primer_p2>TGAATAGAGAATATTGGTGTATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>302</pcr_amplicon_size>
		<canonical_amplicon>GGATGTGGAGATTCTATTAGAGCGTATACAATACTTTCGCAATATTGAGAGTGTAGCTTCAGCACACGGTGAATTTTTTAGGACGGTGAATTTTCTAATGTAAATGCGCTCTGACGCGAATACTGTAGAAGTATCGACGCGCATGCTGAAAAATGAATAACTGAGTCGCTACACAGAGAATTTTGCGACCTAAAGAAAAAAAAAGGCGCGAAAAAAAAATTTAAAATACGTTCTGGAAAAATCGCAGTGTCAGCACGGTTAACCATCTCGTATAAAAAAAATACACCAATATTCTCTATTCA</canonical_amplicon>
		<polymorphic_amplicon>GGATGTGGAGATTCTATTAGAGCGTATACAATACTTTCGCAATATTGAGAGTGTAGCTTCAGCACACGGTGAATTTTTTAGGACGGTGAATTTTCTAATGTAAATGCGCTCTGACGCGAATACTGTAGAAGTATCGACGCGCATGCTGAAAAATRAATAACTGAGTCGCTACACAGAGAATTTTGCGACCTAAAGAAAAAAAAAGGCGCGAAAAAAAAATTTAAAATACGTTCTGGAAAAATCGCAGTGTCAGCACGGTTAACCATCTCGTATAAAAAAAATACACCAATATTCTCTATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25245</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>578012</contig_pos>
        <strand></strand>
        <context>tgaatttttt[G/A]aatgagaatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCAAAAAATGCTCAATTTTTGTGAAATTGATAGATTTTCATGAATTTTTT</left_flank>
        <right_flank>AATGAGAATTCACCGATTTTTGAATGAAAATTTTCGGAGATGCTGGCCGG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAAAAAAAAGGCGCGAAAAAAAAATTTAAAATACGTTCTGGAAAAATCGCAGTGTCAGCACGGTTAACCATCTCGTATAAAAAAAATACACCAATATTCTCTATTCATAGAATTATATTCCATGCTGAATGATTTCAAAAGGATCGATGCAGGAGTGCCAAAACAGTGTTATCTAATGTTTAATTAAAAGTCCAGCCTTTTAGCTTGCACCGGAACAGAGAAAAAATGACTTTTGCTGCCCCTCGAGCGTTGAAAAATCCTCAGATTTCGAATAACCATAAAACCTTCATGAGAAGGGTCCCTCTAATAGAAGTGCCCTCCGAGGTGGACTTGGAAAAAATAGGAGAGTCCCTTCAAAATGTGTTCTTTGAAATTCAAAAGAAAAAAAATTCGAACGTTTTAATAAAATCTGTTCCGGATATTCCTCAATTTCATAGAAACGAAACTCAAAAAATGCTCAATTTTTGTGAAATTGATAGATTTTCATGAATTTTTTGAATGAGAATTCACCGATTTTTGAATGAAAATTTTCGGAGATGCTGGCCGGAAAAATAGAAAGACCCCCTCTAATTGAAGAGCCCCGAAGTTACCTTGGAACTATAGAAGCCCTTCTAATACAGGATTTACGGTAAATGAAGTCGATAAAACAGTGATTCTCAAGACAACCTCTGATGCGTATTGATCAGTTAGTTAAAAGAATGAAAAAAAACCAACTCGAAATTCTTTTTCATAACCTTTCCATTACAGGTTTTTTCTCCTTCATCAAACTGTAGGCGGATTGCTTTAATCCCTCTATCTCTCCATTATTTCGATTGTGAACTTTGTGTGATGCATTCAGTGTATTTTCAACTTGAGACTGATCTTTTTCAAATTTTAAAGTTTTATTCATCATAATATCGTCCTCTTCAGTGAGCATAAAAAACAAATTGATATATAGAATTCGATCATAGAAACACAACCAGTTCAATGAGCTATTCTAATCGATTTTTGTCTATAA</canonical>
            <polymorphic>AAGAAAAAAAAAGGCGCGAAAAAAAAATTTAAAATACGTTCTGGAAAAATCGCAGTGTCAGCACGGTTAACCATCTCGTATAAAAAAAATACACCAATATTCTCTATTCATAGAATTATATTCCATGCTGAATGATTTCAAAAGGATCGATGCAGGAGTGCCAAAACAGTGTTATCTAATGTTTAATTAAAAGTCCAGCCTTTTAGCTTGCACCGGAACAGAGAAAAAATGACTTTTGCTGCCCCTCGAGCGTTGAAAAATCCTCAGATTTCGAATAACCATAAAACCTTCATGAGAAGGGTCCCTCTAATAGAAGTGCCCTCCGAGGTGGACTTGGAAAAAATAGGAGAGTCCCTTCAAAATGTGTTCTTTGAAATTCAAAAGAAAAAAAATTCGAACGTTTTAATAAAATCTGTTCCGGATATTCCTCAATTTCATAGAAACGAAACTCAAAAAATGCTCAATTTTTGTGAAATTGATAGATTTTCATGAATTTTTTRAATGAGAATTCACCGATTTTTGAATGAAAATTTTCGGAGATGCTGGCCGGAAAAATAGAAAGACCCCCTCTAATTGAAGAGCCCCGAAGTTACCTTGGAACTATAGAAGCCCTTCTAATACAGGATTTACGGTAAATGAAGTCGATAAAACAGTGATTCTCAAGACAACCTCTGATGCGTATTGATCAGTTAGTTAAAAGAATGAAAAAAAACCAACTCGAAATTCTTTTTCATAACCTTTCCATTACAGGTTTTTTCTCCTTCATCAAACTGTAGGCGGATTGCTTTAATCCCTCTATCTCTCCATTATTTCGATTGTGAACTTTGTGTGATGCATTCAGTGTATTTTCAACTTGAGACTGATCTTTTTCAAATTTTAAAGTTTTATTCATCATAATATCGTCCTCTTCAGTGAGCATAAAAAACAAATTGATATATAGAATTCGATCATAGAAACACAACCAGTTCAATGAGCTATTCTAATCGATTTTTGTCTATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGATATTCCTCAATTTCATAG</pcr_primer_p1>
		<pcr_primer_p2>GTTGTCTTGAGAATCACTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CGGATATTCCTCAATTTCATAGAAACGAAACTCAAAAAATGCTCAATTTTTGTGAAATTGATAGATTTTCATGAATTTTTTGAATGAGAATTCACCGATTTTTGAATGAAAATTTTCGGAGATGCTGGCCGGAAAAATAGAAAGACCCCCTCTAATTGAAGAGCCCCGAAGTTACCTTGGAACTATAGAAGCCCTTCTAATACAGGATTTACGGTAAATGAAGTCGATAAAACAGTGATTCTCAAGACAAC</canonical_amplicon>
		<polymorphic_amplicon>CGGATATTCCTCAATTTCATAGAAACGAAACTCAAAAAATGCTCAATTTTTGTGAAATTGATAGATTTTCATGAATTTTTTRAATGAGAATTCACCGATTTTTGAATGAAAATTTTCGGAGATGCTGGCCGGAAAAATAGAAAGACCCCCTCTAATTGAAGAGCCCCGAAGTTACCTTGGAACTATAGAAGCCCTTCTAATACAGGATTTACGGTAAATGAAGTCGATAAAACAGTGATTCTCAAGACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25246</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>579701</contig_pos>
        <strand>+</strand>
        <context>ATAGAAACTA[A/G]GAGAACCTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACATCAGAACATATCAATGTAAGAAAAATGAATAGTTTCATAGAAACTA</left_flank>
        <right_flank>GAGAACCTGGAAAACGTTCACTGGATATAAGCGAGCAGTCTCTAAAGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGGTGATGAGCTTCCTCTGAAATGTTGAAAATTATAGAATTTCAACTTTTGTAGGTATTCTCCAAGTTTTTCCAATTCTTTGTGACATTTCTTGTGTTTATATCGTTCTCTATTTTTATTGGGACCTCTAAACTTTTTTGGGACCCCTAATTGTTTTTCGGACCCCAATTTTATTTTTGGACCTCTAAACTATAAAAGAGCCCTACTTTCTGTTTCGAGCCAAAGGCCGGTCTTTCTGAAGGAACTAAAGATTATGTGTTTAATCTTACGTTTTCCATCCACCGAGTCCAGATCTTGATGTACCAGCAAAAACACTTCTTCCCGTGACTCCCGACCCTCCGATACCTGCACCTCTTCCGAGTCCACCTCCTCTTCCGACTCCAGCTCTTGCTCCACCGCCACCTCTTCCACCACCTCCACCGCCTCGTCCACCACCACCTCGTGCGATTACATCAGAACATATCAATGTAAGAAAAATGAATAGTTTCATAGAAACTAGGAGAACCTGGAAAACGTTCACTGGATATAAGCGAGCAGTCTCTAAAGAAAAAAACGACACAAAAACGGTAATGAAGTTGGCTGGTTGAATGTGAAATGCGAAAATTTATTTTCTTTTCTTTGATATCCATTTCAGATGAAGGAGACGAATGGAAACAGGGGAGAAAAAAAATAGAAGAGAGGATTCAGATGAAGTCAACATAAGGGGGAAAAGGCGAGAGAAAAGAAGAAGTGTCAGTGACCAGTGATGAGCCATTGAGACAGCAGAGAGATTAGAGAGAAAAAAGGAATAGATACACAGCTCTTCAGAACAAACAATGTGGTACTAATACAAAAAGTGAGAATTGATGATCAGATTAATAGCATGTGGGTGACAAAGAAATTGGATAAAAATCTGTTGAGAGATGGGAATTGATGATGGGCTCTATCCAATCACATGATGAACGTTTATTGATTCTATTCCCCTTGCGCAGCCCTGTATACAACAAGGGGAAGGCCGGT</canonical>
            <polymorphic>CAGGTGATGAGCTTCCTCTGAAATGTTGAAAATTATAGAATTTCAACTTTTGTAGGTATTCTCCAAGTTTTTCCAATTCTTTGTGACATTTCTTGTGTTTATATCGTTCTCTATTTTTATTGGGACCTCTAAACTTTTTTGGGACCCCTAATTGTTTTTCGGACCCCAATTTTATTTTTGGACCTCTAAACTATAAAAGAGCCCTACTTTCTGTTTCGAGCCAAAGGCCGGTCTTTCTGAAGGAACTAAAGATTATGTGTTTAATCTTACGTTTTCCATCCACCGAGTCCAGATCTTGATGTACCAGCAAAAACACTTCTTCCCGTGACTCCCGACCCTCCGATACCTGCACCTCTTCCGAGTCCACCTCCTCTTCCGACTCCAGCTCTTGCTCCACCGCCACCTCTTCCACCACCTCCACCGCCTCGTCCACCACCACCTCGTGCGATTACATCAGAACATATCAATGTAAGAAAAATGAATAGTTTCATAGAAACTARGAGAACCTGGAAAACGTTCACTGGATATAAGCGAGCAGTCTCTAAAGAAAAAAACGACACAAAAACGGTAATGAAGTTGGCTGGTTGAATGTGAAATGCGAAAATTTATTTTCTTTTCTTTGATATCCATTTCAGATGAAGGAGACGAATGGAAACAGGGGAGAAAAAAAATAGAAGAGAGGATTCAGATGAAGTCAACATAAGGGGGAAAAGGCGAGAGAAAAGAAGAAGTGTCAGTGACCAGTGATGAGCCATTGAGACAGCAGAGAGATTAGAGAGAAAAAAGGAATAGATACACAGCTCTTCAGAACAAACAATGTGGTACTAATACAAAAAGTGAGAATTGATGATCAGATTAATAGCATGTGGGTGACAAAGAAATTGGATAAAAATCTGTTGAGAGATGGGAATTGATGATGGGCTCTATCCAATCACATGATGAACGTTTATTGATTCTATTCCCCTTGCGCAGCCCTGTATACAACAAGGGGAAGGCCGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGATTACATCAGAACATATCA</pcr_primer_p1>
		<pcr_primer_p2>ACTTCATCTGAATCCTCTCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCGATTACATCAGAACATATCAATGTAAGAAAAATGAATAGTTTCATAGAAACTAGGAGAACCTGGAAAACGTTCACTGGATATAAGCGAGCAGTCTCTAAAGAAAAAAACGACACAAAAACGGTAATGAAGTTGGCTGGTTGAATGTGAAATGCGAAAATTTATTTTCTTTTCTTTGATATCCATTTCAGATGAAGGAGACGAATGGAAACAGGGGAGAAAAAAAATAGAAGAGAGGATTCAGATGAAGT</canonical_amplicon>
		<polymorphic_amplicon>GCGATTACATCAGAACATATCAATGTAAGAAAAATGAATAGTTTCATAGAAACTARGAGAACCTGGAAAACGTTCACTGGATATAAGCGAGCAGTCTCTAAAGAAAAAAACGACACAAAAACGGTAATGAAGTTGGCTGGTTGAATGTGAAATGCGAAAATTTATTTTCTTTTCTTTGATATCCATTTCAGATGAAGGAGACGAATGGAAACAGGGGAGAAAAAAAATAGAAGAGAGGATTCAGATGAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25247</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>636684</contig_pos>
        <strand>+</strand>
        <context>GTATTCATCT[G/T]AATAAAGCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTATGGGTTGTGGGTCCACCCTTTTAATAGCCACAGTGAGTATTCATCT</left_flank>
        <right_flank>AATAAAGCATAACTATTCAAAATTTCAGATAAGAGTGTGCTATATTATGA</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATATTGTTTTTTCTATCATACTATCAATAGTTTTAAAATGGAAGGTATGGATTTCAACATTCTCAACACTGTTGTATTTTTATTTTCAGTGTAAAGTATTTGAATCCAGCAATCATTTTACTCTCATATTTTACTTCTGCACTGCGGTAGTCATTCTTGGGAGCTTGTTGTATACTGTCACCACATTTACCCTACTGTATTTCAAAAGTATCAGACACATCTTCTTGATTATGTTTCTTTTTATTCAAATGGCGTTGAAGTTTTGCGCTCCTTTCATCTCACCAGTTATCACCACAATGACATTTCTTTACTCTTTCTCTTTTGTTTTTCAGAGAACTGAAACTTTGAAAACAGCATTTCAATCGAAAACTGGGTAGATTAATACAACCCAATACACTATTTAAAATGTCAAATTCAGATCTCGAACCATTTGGATAATATCTTCAGTGTATGGGTTGTGGGTCCACCCTTTTAATAGCCACAGTGAGTATTCATCTTAATAAAGCATAACTATTCAAAATTTCAGATAAGAGTGTGCTATATTATGACACCAATCACTATTTGTATCAGCTGATTTCTATAAATCTATTTGATTGTTTTATAATACTTTGTACAACAATACTGGTTGGTATCAAACTTTTGAATGTTTACAAACACCCGAAACATCTTTCAAATTATGAAATTGCAAGTTTAATTCATGTTACTGTAATATTATTCTTTCAACACGTTGGTCTTCAGGAAACATTCTCAAAATGAGACTATTTTAATTTCAGATTTTATTTATATTCAACCTAGTTATGCTAAATAGCTCTAATGTGGAAAGATTGGAAAGTTTGAAAAACGTTCTTATGGAAAAACGCGGCACCTGGCAAATTTTTTGCATATTTGGCCCATTTTCTTATCCATATTCAATTCTGTCCAGTGCGATGTTTTCAGGGCCTAAAACGGATTTTCATACAATGAGATCTGTTACTTTTGATGCCAGAAGAATGAGAAGC</canonical>
            <polymorphic>TTATATTGTTTTTTCTATCATACTATCAATAGTTTTAAAATGGAAGGTATGGATTTCAACATTCTCAACACTGTTGTATTTTTATTTTCAGTGTAAAGTATTTGAATCCAGCAATCATTTTACTCTCATATTTTACTTCTGCACTGCGGTAGTCATTCTTGGGAGCTTGTTGTATACTGTCACCACATTTACCCTACTGTATTTCAAAAGTATCAGACACATCTTCTTGATTATGTTTCTTTTTATTCAAATGGCGTTGAAGTTTTGCGCTCCTTTCATCTCACCAGTTATCACCACAATGACATTTCTTTACTCTTTCTCTTTTGTTTTTCAGAGAACTGAAACTTTGAAAACAGCATTTCAATCGAAAACTGGGTAGATTAATACAACCCAATACACTATTTAAAATGTCAAATTCAGATCTCGAACCATTTGGATAATATCTTCAGTGTATGGGTTGTGGGTCCACCCTTTTAATAGCCACAGTGAGTATTCATCTKAATAAAGCATAACTATTCAAAATTTCAGATAAGAGTGTGCTATATTATGACACCAATCACTATTTGTATCAGCTGATTTCTATAAATCTATTTGATTGTTTTATAATACTTTGTACAACAATACTGGTTGGTATCAAACTTTTGAATGTTTACAAACACCCGAAACATCTTTCAAATTATGAAATTGCAAGTTTAATTCATGTTACTGTAATATTATTCTTTCAACACGTTGGTCTTCAGGAAACATTCTCAAAATGAGACTATTTTAATTTCAGATTTTATTTATATTCAACCTAGTTATGCTAAATAGCTCTAATGTGGAAAGATTGGAAAGTTTGAAAAACGTTCTTATGGAAAAACGCGGCACCTGGCAAATTTTTTGCATATTTGGCCCATTTTCTTATCCATATTCAATTCTGTCCAGTGCGATGTTTTCAGGGCCTAAAACGGATTTTCATACAATGAGATCTGTTACTTTTGATGCCAGAAGAATGAGAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>346 234 194 73 71 35 25 22</canonical_bands>
                <polymorphic_bands>346 234 219 73 71 35 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTTTTGTTTTTCAGAGAACTG</pcr_primer_p1>
		<pcr_primer_p2>ACAAATAGTGATTGGTGTCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCTTTTGTTTTTCAGAGAACTGAAACTTTGAAAACAGCATTTCAATCGAAAACTGGGTAGATTAATACAACCCAATACACTATTTAAAATGTCAAATTCAGATCTCGAACCATTTGGATAATATCTTCAGTGTATGGGTTGTGGGTCCACCCTTTTAATAGCCACAGTGAGTATTCATCTTAATAAAGCATAACTATTCAAAATTTCAGATAAGAGTGTGCTATATTATGACACCAATCACTATTTGT</canonical_amplicon>
		<polymorphic_amplicon>CTCTTTTGTTTTTCAGAGAACTGAAACTTTGAAAACAGCATTTCAATCGAAAACTGGGTAGATTAATACAACCCAATACACTATTTAAAATGTCAAATTCAGATCTCGAACCATTTGGATAATATCTTCAGTGTATGGGTTGTGGGTCCACCCTTTTAATAGCCACAGTGAGTATTCATCTKAATAAAGCATAACTATTCAAAATTTCAGATAAGAGTGTGCTATATTATGACACCAATCACTATTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25248</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>661600</contig_pos>
        <strand>+</strand>
        <context>GATGAATCAG[C/T]AAAAAAAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTTCAGAGAGTGGTGGTCCTTTTTGAAATTGGATAAAGATGAATCAG</left_flank>
        <right_flank>AAAAAAAACATGGGACTCAATGTCTTCCTTTTTTGAATTTATGCAAAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAACAACTTTTTTGTATTATGTACATGAACAGAGAAAAATTGACATAAAGTTAATTACGGTAATCAATGATTTATCTTTCTTTTAGTTCTGACCTAATTAACGGTAGCTCAAAAGTTCAATAGATTCTAACAATGTCACCTCGATCTGTTACGTATGTGTATTGACTCCTTAATCTTAAATCCATTATTTAACCTAATATTCGATGTGTTGTTTTATAATTTGTAATTAATTTTTGCATGCTTTCAGAAAATGTAAACTCTATAAAAATCAACATCAGAGTGCAAAAAAACAGCAAAAAAACGTAGTGAATGTACCTTACTGATTGAGTTACGGAAGAGAATTTGAGTTTTGCGTCAGGCAGGTGCACGCCAGTGACGAGGCACAGAAATATGGAAGATGAGAGGAATTGCGTGGAATTTGATCTGTTTTTGGTTGAAAATCGAAGATAATTTTCAGAGAGTGGTGGTCCTTTTTGAAATTGGATAAAGATGAATCAGAAAAAAAAACATGGGACTCAATGTCTTCCTTTTTTGAATTTATGCAAAACAATAAACTAAATTAAAGTTGCGTTGTACAATTTGAAGGAATAATAAGGAAGAGTAAAATGTCATCAAAGTCTTTGAAACAAAAGCCAGAGCTGGAGAAAAAGAAGAAGAAGAAGTCAGTCAAGGAAAGAATATAAACTACAAATGAGATATTAGAATAGGTCAGTGACCTTTTTGAAAAAAAAAAATATGAAGTGACTTGTTGAGTGATGTTGTCTTCTTCTTTTATAGCAAAACAGTTTGCAATTCTGAATTTAATTTGACATAGATTCAGAGAAGGGGAGGAAGTAGACAGAAAACAAGTGACAGAGGCAACTTTTTCTTCTTATGATTATGTTTGATTTGGTTATGTCTGGGAATTTCATTGTTTTTCAAAGAATTCCCAGTTATGATTTCTCCTGGGTGCGAAGTAAAGCAAAAGAATCGTGCAAAATCAAAAAAGAAAGTGGGAGT</canonical>
            <polymorphic>TTAACAACTTTTTTGTATTATGTACATGAACAGAGAAAAATTGACATAAAGTTAATTACGGTAATCAATGATTTATCTTTCTTTTAGTTCTGACCTAATTAACGGTAGCTCAAAAGTTCAATAGATTCTAACAATGTCACCTCGATCTGTTACGTATGTGTATTGACTCCTTAATCTTAAATCCATTATTTAACCTAATATTCGATGTGTTGTTTTATAATTTGTAATTAATTTTTGCATGCTTTCAGAAAATGTAAACTCTATAAAAATCAACATCAGAGTGCAAAAAAACAGCAAAAAAACGTAGTGAATGTACCTTACTGATTGAGTTACGGAAGAGAATTTGAGTTTTGCGTCAGGCAGGTGCACGCCAGTGACGAGGCACAGAAATATGGAAGATGAGAGGAATTGCGTGGAATTTGATCTGTTTTTGGTTGAAAATCGAAGATAATTTTCAGAGAGTGGTGGTCCTTTTTGAAATTGGATAAAGATGAATCAGYAAAAAAAACATGGGACTCAATGTCTTCCTTTTTTGAATTTATGCAAAACAATAAACTAAATTAAAGTTGCGTTGTACAATTTGAAGGAATAATAAGGAAGAGTAAAATGTCATCAAAGTCTTTGAAACAAAAGCCAGAGCTGGAGAAAAAGAAGAAGAAGAAGTCAGTCAAGGAAAGAATATAAACTACAAATGAGATATTAGAATAGGTCAGTGACCTTTTTGAAAAAAAAAAATATGAAGTGACTTGTTGAGTGATGTTGTCTTCTTCTTTTATAGCAAAACAGTTTGCAATTCTGAATTTAATTTGACATAGATTCAGAGAAGGGGAGGAAGTAGACAGAAAACAAGTGACAGAGGCAACTTTTTCTTCTTATGATTATGTTTGATTTGGTTATGTCTGGGAATTTCATTGTTTTTCAAAGAATTCCCAGTTATGATTTCTCCTGGGTGCGAAGTAAAGCAAAAGAATCGTGCAAAATCAAAAAAGAAAGTGGGAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>299 180 179 156 91 41 31 23</canonical_bands>
                <polymorphic_bands>340 180 179 156 91 31 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGTTGAAAATCGAAGATAAT</pcr_primer_p1>
		<pcr_primer_p2>ATTCTTTCCTTGACTGACTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGGTTGAAAATCGAAGATAATTTTCAGAGAGTGGTGGTCCTTTTTGAAATTGGATAAAGATGAATCAGAAAAAAAAACATGGGACTCAATGTCTTCCTTTTTTGAATTTATGCAAAACAATAAACTAAATTAAAGTTGCGTTGTACAATTTGAAGGAATAATAAGGAAGAGTAAAATGTCATCAAAGTCTTTGAAACAAAAGCCAGAGCTGGAGAAAAAGAAGAAGAAGAAGTCAGTCAAGGAAAGAAT</canonical_amplicon>
		<polymorphic_amplicon>TTGGTTGAAAATCGAAGATAATTTTCAGAGAGTGGTGGTCCTTTTTGAAATTGGATAAAGATGAATCAGYAAAAAAAACATGGGACTCAATGTCTTCCTTTTTTGAATTTATGCAAAACAATAAACTAAATTAAAGTTGCGTTGTACAATTTGAAGGAATAATAAGGAAGAGTAAAATGTCATCAAAGTCTTTGAAACAAAAGCCAGAGCTGGAGAAAAAGAAGAAGAAGAAGTCAGTCAAGGAAAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25249</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>665637</contig_pos>
        <strand>+</strand>
        <context>TTTCATTGGA[C/T]CCCTGCGTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCTTTACTTGCAATCTTCTATTCCGAATTTTTATTGTAATTTCATTGGA</left_flank>
        <right_flank>CCCTGCGTTCTAATATCCCTGTTTCAAAACGGGTTCGTCCTCTTCTCTTA</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAAAGGGTCGAAATATTATTTTCAGAACTTATTACATAAATCTCGATGAGCTTAATAAAAATGCGTCGACGCCATTCGTTTTCGAATATTCGTTTAAAGATGCCTATGGAATTACAGGGTTGGGTTCCATTTAATGTTATTATTTTTAAAATATATATTTTTGTTTTCAGAGATATCACACCGAATGCTGTTTCCGATGTTCTTGAAAAAATGAAAACCAACGACAGTTTGTTCATGACTTATATCAATTACAACACTGCTTTCTGGAATCCAGTGATGCCAGTGGATGAATATAAGTAAGTGGACATTGTATAGTTTGAGAAAGATAAAATTCTATTTCAGAGGAGCCCAATTGTGTTCTATGGAGTACGCCGACTATCCTCGATACCAAACATGTCTCTCAAAATACGAAAAATCTGCACATAATGATCTGAAACTTCCCATCTTCTCTTTACTTGCAATCTTCTATTCCGAATTTTTATTGTAATTTCATTGGACCCCTGCGTTCTAATATCCCTGTTTCAAAACGGGTTCGTCCTCTTCTCTTACTAAAAAACAAACTCTGAAAACCTTACAAGGGAAGGTTTTTCACAACGGTTGAGAATTTGCTCAAAATTTGTACAAAGGTACTTTCGAACATGCTGAATAAGAATTCGAAAAAATTTTTAGCCCGTTCTCAGAAAAAAGAAATATGGCCTCTGAAAGTGCTTTCAGTACTAAATTTTGACCAAAAACATGCATTTTTCGAGGCTAAAAATTAGTTTTACAGGGTTTTTTTGAGTGCGAAATTAATTTTTGAACATTTTTCTATTTTTTAAAACAGTTTTTGAAAAATATTTTTTTTGAAAACTTTTGAAAAAAATCACCATGGGGTCCCCCGCACTTCGAAAGTGATTTTTTGAAAATTATTTGAAAAGTTCGAAAAAATGTTCCAATTATTCAGAAACGATAAAAATAGCATCCTGACAAAATTTGACAGCCCAATGTTGTCGTTGGGC</canonical>
            <polymorphic>TCAAAAGGGTCGAAATATTATTTTCAGAACTTATTACATAAATCTCGATGAGCTTAATAAAAATGCGTCGACGCCATTCGTTTTCGAATATTCGTTTAAAGATGCCTATGGAATTACAGGGTTGGGTTCCATTTAATGTTATTATTTTTAAAATATATATTTTTGTTTTCAGAGATATCACACCGAATGCTGTTTCCGATGTTCTTGAAAAAATGAAAACCAACGACAGTTTGTTCATGACTTATATCAATTACAACACTGCTTTCTGGAATCCAGTGATGCCAGTGGATGAATATAAGTAAGTGGACATTGTATAGTTTGAGAAAGATAAAATTCTATTTCAGAGGAGCCCAATTGTGTTCTATGGAGTACGCCGACTATCCTCGATACCAAACATGTCTCTCAAAATACGAAAAATCTGCACATAATGATCTGAAACTTCCCATCTTCTCTTTACTTGCAATCTTCTATTCCGAATTTTTATTGTAATTTCATTGGAYCCCTGCGTTCTAATATCCCTGTTTCAAAACGGGTTCGTCCTCTTCTCTTACTAAAAAACAAACTCTGAAAACCTTACAAGGGAAGGTTTTTCACAACGGTTGAGAATTTGCTCAAAATTTGTACAAAGGTACTTTCGAACATGCTGAATAAGAATTCGAAAAAATTTTTAGCCCGTTCTCAGAAAAAAGAAATATGGCCTCTGAAAGTGCTTTCAGTACTAAATTTTGACCAAAAACATGCATTTTTCGAGGCTAAAAATTAGTTTTACAGGGTTTTTTTGAGTGCGAAATTAATTTTTGAACATTTTTCTATTTTTTAAAACAGTTTTTGAAAAATATTTTTTTTGAAAACTTTTGAAAAAAATCACCATGGGGTCCCCCGCACTTCGAAAGTGATTTTTTGAAAATTATTTGAAAAGTTCGAAAAAATGTTCCAATTATTCAGAAACGATAAAAATAGCATCCTGACAAAATTTGACAGCCCAATGTTGTCGTTGGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>497 377 126</canonical_bands>
                <polymorphic_bands>874 126</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>497 377 126</canonical_bands>
                <polymorphic_bands>874 126</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGACATTGTATAGTTTGAGAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTAGTAAGAGAAGAGGACGAACC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGGACATTGTATAGTTTGAGAAAGATAAAATTCTATTTCAGAGGAGCCCAATTGTGTTCTATGGAGTACGCCGACTATCCTCGATACCAAACATGTCTCTCAAAATACGAAAAATCTGCACATAATGATCTGAAACTTCCCATCTTCTCTTTACTTGCAATCTTCTATTCCGAATTTTTATTGTAATTTCATTGGACCCCTGCGTTCTAATATCCCTGTTTCAAAACGGGTTCGTCCTCTTCTCTTACTAA</canonical_amplicon>
		<polymorphic_amplicon>TGGACATTGTATAGTTTGAGAAAGATAAAATTCTATTTCAGAGGAGCCCAATTGTGTTCTATGGAGTACGCCGACTATCCTCGATACCAAACATGTCTCTCAAAATACGAAAAATCTGCACATAATGATCTGAAACTTCCCATCTTCTCTTTACTTGCAATCTTCTATTCCGAATTTTTATTGTAATTTCATTGGAYCCCTGCGTTCTAATATCCCTGTTTCAAAACGGGTTCGTCCTCTTCTCTTACTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25250</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>667552</contig_pos>
        <strand>+</strand>
        <context>TCTCTTGCAA[A/G]ATCATACGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCCAATTCAGCTCAATCATTCTCTTCGTTTTCGTCTCTTTCTCTTGCAA</left_flank>
        <right_flank>ATCATACGGTTCATCATCTTCTTCACACGCCGGTAGTTGTGATTCCTCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGAAGAAGATGTGAAGATTGAATTAGCACCGTTGGTTTTTTTAATCCCTTCTAATTCATTTTTTTTGTTTTTTGCAGATTCGGACCTGTTCATTCGGTTCATATGTGCACTTTGGATGCCTGTCAGGCTTTTGTGACTTTTCGAAATTCTCCGGAAATGTCAGCACGGAAAATAGTTTCGAAACTTTTCAAATTGACAACTGGAGTACTGTTCGTAGGAGATTTCGTATGGACGATTTGTAAGCCAGAAGAATGGAAGAAATGTATGGAAACCCCATTGGATGATTTGGATGGAGTTGAGAATGTGAGCTCGGCTGGACAAGGAATTACGGTTGATGAGTTGACTGATATCTTCACGAATTTCATGCAACATAATTCTTCAGTAAGGATGTCTGGTTAGAACGTTAAAGTTTTGAATCCATTTTCAGATGTCTCCAGTGTCCGTCTTCTCCAATTCAGCTCAATCATTCTCTTCGTTTTCGTCTCTTTCTCTTGCAAAATCATACGGTTCATCATCTTCTTCACACGCCGGTAGTTGTGATTCCTCCGCGACAATCACCCCATTCTCTTTCTACCCCGCTCAAAAATCTTCTGGTTTGTCTTTATAGCTCATTCTCAAGTCAATCATCTAAATTTTTAAAGGTTTCATCAATCTGCCGCCTCCTTATCACATTCTTCCGGATACCGCCTTCTTTCGTCGCACCAAAATCGTTCCACCTCCGCCAATCAAACCGGTTTCATTGACTCAAAACATCATGGATTGCTATATCAGCAGTATCCGAAAAGGCGATTCTGAATTGAACAGAAGCCGTCAAACGTCGATCGGTTCGAAAATGGAATTGGAGTGCAATTGGTGCAATTCGTTGTAATCTTCTCTTCTCTTTTATAATGTTTCGTTTTTCTAAATTTTGAAGACAAGTTCGATAAATATTTTAGAAGTTTATTCACATGTTTTTATACAGGTCAATGAAATATTTCGTTTCTCTGTCAGACAGAAGA</canonical>
            <polymorphic>ACTGAAGAAGATGTGAAGATTGAATTAGCACCGTTGGTTTTTTTAATCCCTTCTAATTCATTTTTTTTGTTTTTTGCAGATTCGGACCTGTTCATTCGGTTCATATGTGCACTTTGGATGCCTGTCAGGCTTTTGTGACTTTTCGAAATTCTCCGGAAATGTCAGCACGGAAAATAGTTTCGAAACTTTTCAAATTGACAACTGGAGTACTGTTCGTAGGAGATTTCGTATGGACGATTTGTAAGCCAGAAGAATGGAAGAAATGTATGGAAACCCCATTGGATGATTTGGATGGAGTTGAGAATGTGAGCTCGGCTGGACAAGGAATTACGGTTGATGAGTTGACTGATATCTTCACGAATTTCATGCAACATAATTCTTCAGTAAGGATGTCTGGTTAGAACGTTAAAGTTTTGAATCCATTTTCAGATGTCTCCAGTGTCCGTCTTCTCCAATTCAGCTCAATCATTCTCTTCGTTTTCGTCTCTTTCTCTTGCAARATCATACGGTTCATCATCTTCTTCACACGCCGGTAGTTGTGATTCCTCCGCGACAATCACCCCATTCTCTTTCTACCCCGCTCAAAAATCTTCTGGTTTGTCTTTATAGCTCATTCTCAAGTCAATCATCTAAATTTTTAAAGGTTTCATCAATCTGCCGCCTCCTTATCACATTCTTCCGGATACCGCCTTCTTTCGTCGCACCAAAATCGTTCCACCTCCGCCAATCAAACCGGTTTCATTGACTCAAAACATCATGGATTGCTATATCAGCAGTATCCGAAAAGGCGATTCTGAATTGAACAGAAGCCGTCAAACGTCGATCGGTTCGAAAATGGAATTGGAGTGCAATTGGTGCAATTCGTTGTAATCTTCTCTTCTCTTTTATAATGTTTCGTTTTTCTAAATTTTGAAGACAAGTTCGATAAATATTTTAGAAGTTTATTCACATGTTTTTATACAGGTCAATGAAATATTTCGTTTCTCTGTCAGACAGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATGCAACATAATTCTTCAGTA</pcr_primer_p1>
		<pcr_primer_p2>TGAGCTATAAAGACAAACCAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCATGCAACATAATTCTTCAGTAAGGATGTCTGGTTAGAACGTTAAAGTTTTGAATCCATTTTCAGATGTCTCCAGTGTCCGTCTTCTCCAATTCAGCTCAATCATTCTCTTCGTTTTCGTCTCTTTCTCTTGCAAAATCATACGGTTCATCATCTTCTTCACACGCCGGTAGTTGTGATTCCTCCGCGACAATCACCCCATTCTCTTTCTACCCCGCTCAAAAATCTTCTGGTTTGTCTTTATAGCTCA</canonical_amplicon>
		<polymorphic_amplicon>TCATGCAACATAATTCTTCAGTAAGGATGTCTGGTTAGAACGTTAAAGTTTTGAATCCATTTTCAGATGTCTCCAGTGTCCGTCTTCTCCAATTCAGCTCAATCATTCTCTTCGTTTTCGTCTCTTTCTCTTGCAARATCATACGGTTCATCATCTTCTTCACACGCCGGTAGTTGTGATTCCTCCGCGACAATCACCCCATTCTCTTTCTACCCCGCTCAAAAATCTTCTGGTTTGTCTTTATAGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25251</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>676460</contig_pos>
        <strand>+</strand>
        <context>ACGACAGCTC[C/T]ATCGTATCGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTTCGGATCGATAAGGTGCAGTGCAGCTCCCTTCTGAAACGACAGCTC</left_flank>
        <right_flank>ATCGTATCGATCATTGCGGCACACACGCGCATGAGGCACAGCTTTCGCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAAACACCCTTAAATATGCTAAACCTGTTACCACTGCTCCCTTCTCAATTTTTCGGTTCATCTCATTTGGAATATCCTTTGCCCCGAAAAACATGAAGGGCTCCTGATGATGATGAGGATGATGATGATGAATCGGGAGCATACACATATTCAAGCACATCTTCTTCTCTTCTCTTTTCTCTATGTGTCATTCATTTGATTATCTTTTCACTGCTCTCTGGCTGAAACGAGGCAGAAAAAAGGAGGAAAAAAGCATGTGAGCTTGAAAAGAGAACCATTCTCTTCAAGATCCTTACTCTCTCGCATTCCAACGCATTCACCATCGCATTGAGAAGGAAGAAAAAAGACGACGTCATCTGTAAAAAAGAGAGAGAGAAGACTCATGAGATCTGTGTGTGTGCGTGTGTGAGTGTGCTCGTCGAACCGGAGCCAACGGAGAGAGAGGCCTTCTTCGGATCGATAAGGTGCAGTGCAGCTCCCTTCTGAAACGACAGCTCCATCGTATCGATCATTGCGGCACACACGCGCATGAGGCACAGCTTTCGCCCCCACCACCTCTACATCGTCTTCGTCTTCTTTTTCTTTTCCTTTTTTCTTTTTCTTTTCCCTCGCCTGTCTCGCTCTGCTTTCCGCGCCGCCCACTTTTTCAGCACCGATCGGACGGCTCAACAAAACTGACAGCTTTTTTTCTCGTTTCTTGAATTTGCGATAGGCGCGCGCAAAGAAAAGATTTTGGAATTTCCGTTTCGCTGTCATGTATAAATGAGTTATATGTTTTTGTGTTTTGTCTTTCTGAAATTACAAGTTGAATTTGTCCTTTTTCACTTCATCAGCTCATTCTTATTCCGATCTTGTTCGACGTCACTCTCTGTGTCTTTAGTATGATAAATTAGAAGCAGTTCCGGGCTTGAGGGAGACACATGTCAATCTTTTTTCTCTGTTTCGGAAATTAGCAAATCTCAAAAAGGGATTTATGAAATTTATGAATTGGCAAAACA</canonical>
            <polymorphic>CAGAAACACCCTTAAATATGCTAAACCTGTTACCACTGCTCCCTTCTCAATTTTTCGGTTCATCTCATTTGGAATATCCTTTGCCCCGAAAAACATGAAGGGCTCCTGATGATGATGAGGATGATGATGATGAATCGGGAGCATACACATATTCAAGCACATCTTCTTCTCTTCTCTTTTCTCTATGTGTCATTCATTTGATTATCTTTTCACTGCTCTCTGGCTGAAACGAGGCAGAAAAAAGGAGGAAAAAAGCATGTGAGCTTGAAAAGAGAACCATTCTCTTCAAGATCCTTACTCTCTCGCATTCCAACGCATTCACCATCGCATTGAGAAGGAAGAAAAAAGACGACGTCATCTGTAAAAAAGAGAGAGAGAAGACTCATGAGATCTGTGTGTGTGCGTGTGTGAGTGTGCTCGTCGAACCGGAGCCAACGGAGAGAGAGGCCTTCTTCGGATCGATAAGGTGCAGTGCAGCTCCCTTCTGAAACGACAGCTCYATCGTATCGATCATTGCGGCACACACGCGCATGAGGCACAGCTTTCGCCCCCACCACCTCTACATCGTCTTCGTCTTCTTTTTCTTTTCCTTTTTTCTTTTTCTTTTCCCTCGCCTGTCTCGCTCTGCTTTCCGCGCCGCCCACTTTTTCAGCACCGATCGGACGGCTCAACAAAACTGACAGCTTTTTTTCTCGTTTCTTGAATTTGCGATAGGCGCGCGCAAAGAAAAGATTTTGGAATTTCCGTTTCGCTGTCATGTATAAATGAGTTATATGTTTTTGTGTTTTGTCTTTCTGAAATTACAAGTTGAATTTGTCCTTTTTCACTTCATCAGCTCATTCTTATTCCGATCTTGTTCGACGTCACTCTCTGTGTCTTTAGTATGATAAATTAGAAGCAGTTCCGGGCTTGAGGGAGACACATGTCAATCTTTTTTCTCTGTTTCGGAAATTAGCAAATCTCAAAAAGGGATTTATGAAATTTATGAATTGGCAAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTTCGGATCGATAAGGT</pcr_primer_p1>
		<pcr_primer_p2>CAAATTCAAGAAACGAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>CTTCTTCGGATCGATAAGGTGCAGTGCAGCTCCCTTCTGAAACGACAGCTCCATCGTATCGATCATTGCGGCACACACGCGCATGAGGCACAGCTTTCGCCCCCACCACCTCTACATCGTCTTCGTCTTCTTTTTCTTTTCCTTTTTTCTTTTTCTTTTCCCTCGCCTGTCTCGCTCTGCTTTCCGCGCCGCCCACTTTTTCAGCACCGATCGGACGGCTCAACAAAACTGACAGCTTTTTTTCTCGTTTCTTGAATTTG</canonical_amplicon>
		<polymorphic_amplicon>CTTCTTCGGATCGATAAGGTGCAGTGCAGCTCCCTTCTGAAACGACAGCTCYATCGTATCGATCATTGCGGCACACACGCGCATGAGGCACAGCTTTCGCCCCCACCACCTCTACATCGTCTTCGTCTTCTTTTTCTTTTCCTTTTTTCTTTTTCTTTTCCCTCGCCTGTCTCGCTCTGCTTTCCGCGCCGCCCACTTTTTCAGCACCGATCGGACGGCTCAACAAAACTGACAGCTTTTTTTCTCGTTTCTTGAATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25252</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>710155</contig_pos>
        <strand>+</strand>
        <context>ACCCATCATA[G/T]GYATGCCACT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CACGTTTGGGCTCTCCTTCTTGTCCTGGAATTAGAGACGTACCCATCATA</left_flank>
        <right_flank>GTATGCCACTTTCAAGTTGCCAATTAATACGCTCAATTTACAGAACCACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAATCGTCTATCGAATCGGAAGTGTGGGACACGATACATTCCTATGTTTGTGGGACATCACAAACGAAATTCTCAACAAAGGTAATCATCGTCGTCATCGAAATTCGACAATTATTGCAACAAATGCCGCCTTAGATATCGATCACTTGTCCGGAAAGCTCGAGGATCTACCTGAGCTGTCACCTGGTGTCGGAGAACCAAGCACAAACTCTGAGCAACCACTACTCGACGCGAATCGACCAGCCCCACCACAAGAAAAGCCCCCAAAGAAGAAGCGTTTCAACAGAAAAGCTTTTGGACTTTCGAAGTTCACCTCTTCTGGAAACGCAAGTACAAGTACCAGTGCTGTAGGAAGTAGAGCTAATCCAACAAATGCCAACGCATCCAGTGTTGACATGTAAATTTTGTTCAATCCGATGAGAAAAAAGTAATTCTCGTTTCAGAGTCGCACGTTTGGGCTCTCCTTCTTGTCCTGGAATTAGAGACGTACCCATCATAGGTATGCCACTTTCAAGTTGCCAATTAATACGCTCAATTTACAGAACCACTTACATGCAAGAAAGTTTCTCATGATCGTTTGACAGTGCTTGAGTTCAGAAAGGACTGTGTTGTTACTGCGTGCCAAGAAGGCTTCATTTGCACTTGGAGCCGGCCATCTGACCGAGACGACGTGAAACAAGATAATCTCAGTTCAACAGCGGCTGCGACGCCAGAATCAGAACAGAAACCTTCTGTTTCGGCCACCGCATCGTTTGGTTATGGATCAGAAATATCGAACGGTGTTACTGGATCTCGTTCGTCTAGTAACTTCAGTACCCGTAAGTTCGACACATCCCTGATTCTTTACTAACCCATCTGAAGCATTCTAGATGAGCTACAACAACTCCGCTCGCCGAATGCCACATCTCCTTCATATCGAGTGGGCGCCAGTACTTCTGCTTATCACCGTCCCATGTATGCATGGCAAAACGCCAACTAACTATCCTTCAACGGGTATTT</canonical>
            <polymorphic>GAAATCGTCTATCGAATCGGAAGTGTGGGACACGATACATTCCTATGTTTGTGGGACATCACAAACGAAATTCTCAACAAAGGTAATCATCGTCGTCATCGAAATTCGACAATTATTGCAACAAATGCCGCCTTAGATATCGATCACTTGTCCGGAAAGCTCGAGGATCTACCTGAGCTGTCACCTGGTGTCGGAGAACCAAGCACAAACTCTGAGCAACCACTACTCGACGCGAATCGACCAGCCCCACCACAAGAAAAGCCCCCAAAGAAGAAGCGTTTCAACAGAAAAGCTTTTGGACTTTCGAAGTTCACCTCTTCTGGAAACGCAAGTACAAGTACCAGTGCTGTAGGAAGTAGAGCTAATCCAACAAATGCCAACGCATCCAGTGTTGACATGTAAATTTTGTTCAATCCGATGAGAAAAAAGTAATTCTCGTTTCAGAGTCGCACGTTTGGGCTCTCCTTCTTGTCCTGGAATTAGAGACGTACCCATCATAKGTATGCCACTTTCAAGTTGCCAATTAATACGCTCAATTTACAGAACCACTTACATGCAAGAAAGTTTCTCATGATCGTTTGACAGTGCTTGAGTTCAGAAAGGACTGTGTTGTTACTGCGTGCCAAGAAGGCTTCATTTGCACTTGGAGCCGGCCATCTGACCGAGACGACGTGAAACAAGATAATCTCAGTTCAACAGCGGCTGCGACGCCAGAATCAGAACAGAAACCTTCTGTTTCGGCCACCGCATCGTTTGGTTATGGATCAGAAATATCGAACGGTGTTACTGGATCTCGTTCGTCTAGTAACTTCAGTACCCGTAAGTTCGACACATCCCTGATTCTTTACTAACCCATCTGAAGCATTCTAGATGAGCTACAACAACTCCGCTCGCCGAATGCCACATCTCCTTCATATCGAGTGGGCGCCAGTACTTCTGCTTATCACCGTCCCATGTATGCATGGCAAAACGCCAACTAACTATCCTTCAACGGGTATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>494 307 190 9</canonical_bands>
                <polymorphic_bands>801 190 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTACCAGTGCTGTAGGAAGTA</pcr_primer_p1>
		<pcr_primer_p2>GTCAAACGATCATGAGAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGTACCAGTGCTGTAGGAAGTAGAGCTAATCCAACAAATGCCAACGCATCCAGTGTTGACATGTAAATTTTGTTCAATCCGATGAGAAAAAAGTAATTCTCGTTTCAGAGTCGCACGTTTGGGCTCTCCTTCTTGTCCTGGAATTAGAGACGTACCCATCATAGGTATGCCACTTTCAAGTTGCCAATTAATACGCTCAATTTACAGAACCACTTACATGCAAGAAAGTTTCTCATGATCGTTTGAC</canonical_amplicon>
		<polymorphic_amplicon>AAGTACCAGTGCTGTAGGAAGTAGAGCTAATCCAACAAATGCCAACGCATCCAGTGTTGACATGTAAATTTTGTTCAATCCGATGAGAAAAAAGTAATTCTCGTTTCAGAGTCGCACGTTTGGGCTCTCCTTCTTGTCCTGGAATTAGAGACGTACCCATCATAKGTATGCCACTTTCAAGTTGCCAATTAATACGCTCAATTTACAGAACCACTTACATGCAAGAAAGTTTCTCATGATCGTTTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25253</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>710157</contig_pos>
        <strand>+</strand>
        <context>CCATCATAKG[C/T]ATGCCACTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTTTGGGCTCTCCTTCTTGTCCTGGAATTAGAGACGTACCCATCATAGG</left_flank>
        <right_flank>ATGCCACTTTCAAGTTGCCAATTAATACGCTCAATTTACAGAACCACTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCGTCTATCGAATCGGAAGTGTGGGACACGATACATTCCTATGTTTGTGGGACATCACAAACGAAATTCTCAACAAAGGTAATCATCGTCGTCATCGAAATTCGACAATTATTGCAACAAATGCCGCCTTAGATATCGATCACTTGTCCGGAAAGCTCGAGGATCTACCTGAGCTGTCACCTGGTGTCGGAGAACCAAGCACAAACTCTGAGCAACCACTACTCGACGCGAATCGACCAGCCCCACCACAAGAAAAGCCCCCAAAGAAGAAGCGTTTCAACAGAAAAGCTTTTGGACTTTCGAAGTTCACCTCTTCTGGAAACGCAAGTACAAGTACCAGTGCTGTAGGAAGTAGAGCTAATCCAACAAATGCCAACGCATCCAGTGTTGACATGTAAATTTTGTTCAATCCGATGAGAAAAAAGTAATTCTCGTTTCAGAGTCGCACGTTTGGGCTCTCCTTCTTGTCCTGGAATTAGAGACGTACCCATCATAGGTATGCCACTTTCAAGTTGCCAATTAATACGCTCAATTTACAGAACCACTTACATGCAAGAAAGTTTCTCATGATCGTTTGACAGTGCTTGAGTTCAGAAAGGACTGTGTTGTTACTGCGTGCCAAGAAGGCTTCATTTGCACTTGGAGCCGGCCATCTGACCGAGACGACGTGAAACAAGATAATCTCAGTTCAACAGCGGCTGCGACGCCAGAATCAGAACAGAAACCTTCTGTTTCGGCCACCGCATCGTTTGGTTATGGATCAGAAATATCGAACGGTGTTACTGGATCTCGTTCGTCTAGTAACTTCAGTACCCGTAAGTTCGACACATCCCTGATTCTTTACTAACCCATCTGAAGCATTCTAGATGAGCTACAACAACTCCGCTCGCCGAATGCCACATCTCCTTCATATCGAGTGGGCGCCAGTACTTCTGCTTATCACCGTCCCATGTATGCATGGCAAAACGCCAACTAACTATCCTTCAACGGGTATTTTG</canonical>
            <polymorphic>AATCGTCTATCGAATCGGAAGTGTGGGACACGATACATTCCTATGTTTGTGGGACATCACAAACGAAATTCTCAACAAAGGTAATCATCGTCGTCATCGAAATTCGACAATTATTGCAACAAATGCCGCCTTAGATATCGATCACTTGTCCGGAAAGCTCGAGGATCTACCTGAGCTGTCACCTGGTGTCGGAGAACCAAGCACAAACTCTGAGCAACCACTACTCGACGCGAATCGACCAGCCCCACCACAAGAAAAGCCCCCAAAGAAGAAGCGTTTCAACAGAAAAGCTTTTGGACTTTCGAAGTTCACCTCTTCTGGAAACGCAAGTACAAGTACCAGTGCTGTAGGAAGTAGAGCTAATCCAACAAATGCCAACGCATCCAGTGTTGACATGTAAATTTTGTTCAATCCGATGAGAAAAAAGTAATTCTCGTTTCAGAGTCGCACGTTTGGGCTCTCCTTCTTGTCCTGGAATTAGAGACGTACCCATCATAGGYATGCCACTTTCAAGTTGCCAATTAATACGCTCAATTTACAGAACCACTTACATGCAAGAAAGTTTCTCATGATCGTTTGACAGTGCTTGAGTTCAGAAAGGACTGTGTTGTTACTGCGTGCCAAGAAGGCTTCATTTGCACTTGGAGCCGGCCATCTGACCGAGACGACGTGAAACAAGATAATCTCAGTTCAACAGCGGCTGCGACGCCAGAATCAGAACAGAAACCTTCTGTTTCGGCCACCGCATCGTTTGGTTATGGATCAGAAATATCGAACGGTGTTACTGGATCTCGTTCGTCTAGTAACTTCAGTACCCGTAAGTTCGACACATCCCTGATTCTTTACTAACCCATCTGAAGCATTCTAGATGAGCTACAACAACTCCGCTCGCCGAATGCCACATCTCCTTCATATCGAGTGGGCGCCAGTACTTCTGCTTATCACCGTCCCATGTATGCATGGCAAAACGCCAACTAACTATCCTTCAACGGGTATTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTACCAGTGCTGTAGGAAGTA</pcr_primer_p1>
		<pcr_primer_p2>GTCAAACGATCATGAGAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGTACCAGTGCTGTAGGAAGTAGAGCTAATCCAACAAATGCCAACGCATCCAGTGTTGACATGTAAATTTTGTTCAATCCGATGAGAAAAAAGTAATTCTCGTTTCAGAGTCGCACGTTTGGGCTCTCCTTCTTGTCCTGGAATTAGAGACGTACCCATCATAGGTATGCCACTTTCAAGTTGCCAATTAATACGCTCAATTTACAGAACCACTTACATGCAAGAAAGTTTCTCATGATCGTTTGAC</canonical_amplicon>
		<polymorphic_amplicon>AAGTACCAGTGCTGTAGGAAGTAGAGCTAATCCAACAAATGCCAACGCATCCAGTGTTGACATGTAAATTTTGTTCAATCCGATGAGAAAAAAGTAATTCTCGTTTCAGAGTCGCACGTTTGGGCTCTCCTTCTTGTCCTGGAATTAGAGACGTACCCATCATAGGYATGCCACTTTCAAGTTGCCAATTAATACGCTCAATTTACAGAACCACTTACATGCAAGAAAGTTTCTCATGATCGTTTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25254</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>713138</contig_pos>
        <strand>+</strand>
        <context>TGTCGTTTGA[G/T]CGACAGTTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGGTTGCCACGTGTTCGTTTGATCTACTTGTGGAGCCCATGTCGTTTGA</left_flank>
        <right_flank>CGACAGTTGGTTGTGGTCGAATAGGAGCTGGTGTTACTGGGTTGGAAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCTTTGGCCTGATTTTAAAATTACGAATTTCTCGCTTCTTTTTTATCGTTGTTATCTCTCTATCCTTGAATCTCAACACGAACTTATTATCAATTTTCTCGGTTATCACAGGTTTTTGATGATTTCATTCTCTTCCAATCTTTGTCGGTGTATGGTATTTATAAACTTTATTTTGATCAATGTACAATTTTCACAATCCTCTCCAACCGAATGGTGGGGGTCCAGGAGGAGGTGGTCCCCATGGTGGAGGTGGTCTTCCCCACCACGGACCCCGTCTCCATGGTGGCCGATGATGCCAACCTTCGAAATCCGGAGGTGGTGGTCCTCTATCGCGCCAATGTGGGGGTGGAGGTCCTCTTTCTCGCCATTCCGGATTCCATCTTTCTGCTTGAGGTTGCTGATTATCTTGGTCCCAATTACTCTGTTGGGGTTGCTGTTCTTGTTGAGATGGTTGCCACGTGTTCGTTTGATCTACTTGTGGAGCCCATGTCGTTTGAGCGACAGTTGGTTGTGGTCGAATAGGAGCTGGTGTTACTGGGTTGGAAAGTGGAACAGGAACCGATGCAACACCAGGTGGTCCTCTAAAAGTTAAAAAAACAATAAGTAAAAAGTTGAAACAATTGAGGCCCTACGAAAGCGCGAGAGACGAAAACGCGAGAAACGAAAGCGCGAGAAACGAAAGCGCGAGAAAGGGGCGGGGCTTAACAGTCCAGTGCGGCGCATTGTAAAAGTAGTGTTCAAATGCTGATTTTCTTGTAAATTTAAACATTAAATTACTGTAAACAGTCGGTAAAGGCATTAGACAAGCTATTCCACACAAAAACGTTTAAAATATAGTGAAACTCTCAAAGTTGGACGGGAAAATGTATTGCTTCGTTTGTATCATATTTTTTTTCGTTTCCGAGCTAAAAATTGAAATAGCAAACAAGCAATAAGTAACCCGTGAATGTGTTCATTGCTTTGTCAGACATGCTCCATTACTTGTTTCAAATTTTTTA</canonical>
            <polymorphic>TTCCTTTGGCCTGATTTTAAAATTACGAATTTCTCGCTTCTTTTTTATCGTTGTTATCTCTCTATCCTTGAATCTCAACACGAACTTATTATCAATTTTCTCGGTTATCACAGGTTTTTGATGATTTCATTCTCTTCCAATCTTTGTCGGTGTATGGTATTTATAAACTTTATTTTGATCAATGTACAATTTTCACAATCCTCTCCAACCGAATGGTGGGGGTCCAGGAGGAGGTGGTCCCCATGGTGGAGGTGGTCTTCCCCACCACGGACCCCGTCTCCATGGTGGCCGATGATGCCAACCTTCGAAATCCGGAGGTGGTGGTCCTCTATCGCGCCAATGTGGGGGTGGAGGTCCTCTTTCTCGCCATTCCGGATTCCATCTTTCTGCTTGAGGTTGCTGATTATCTTGGTCCCAATTACTCTGTTGGGGTTGCTGTTCTTGTTGAGATGGTTGCCACGTGTTCGTTTGATCTACTTGTGGAGCCCATGTCGTTTGAKCGACAGTTGGTTGTGGTCGAATAGGAGCTGGTGTTACTGGGTTGGAAAGTGGAACAGGAACCGATGCAACACCAGGTGGTCCTCTAAAAGTTAAAAAAACAATAAGTAAAAAGTTGAAACAATTGAGGCCCTACGAAAGCGCGAGAGACGAAAACGCGAGAAACGAAAGCGCGAGAAACGAAAGCGCGAGAAAGGGGCGGGGCTTAACAGTCCAGTGCGGCGCATTGTAAAAGTAGTGTTCAAATGCTGATTTTCTTGTAAATTTAAACATTAAATTACTGTAAACAGTCGGTAAAGGCATTAGACAAGCTATTCCACACAAAAACGTTTAAAATATAGTGAAACTCTCAAAGTTGGACGGGAAAATGTATTGCTTCGTTTGTATCATATTTTTTTTCGTTTCCGAGCTAAAAATTGAAATAGCAAACAAGCAATAAGTAACCCGTGAATGTGTTCATTGCTTTGTCAGACATGCTCCATTACTTGTTTCAAATTTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGGTTGCTGATTATCTTG</pcr_primer_p1>
		<pcr_primer_p2>CCTCAATTGTTTCAACTTTTTAC</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TTGAGGTTGCTGATTATCTTGGTCCCAATTACTCTGTTGGGGTTGCTGTTCTTGTTGAGATGGTTGCCACGTGTTCGTTTGATCTACTTGTGGAGCCCATGTCGTTTGAGCGACAGTTGGTTGTGGTCGAATAGGAGCTGGTGTTACTGGGTTGGAAAGTGGAACAGGAACCGATGCAACACCAGGTGGTCCTCTAAAAGTTAAAAAAACAATAAGTAAAAAGTTGAAACAATTGAGG</canonical_amplicon>
		<polymorphic_amplicon>TTGAGGTTGCTGATTATCTTGGTCCCAATTACTCTGTTGGGGTTGCTGTTCTTGTTGAGATGGTTGCCACGTGTTCGTTTGATCTACTTGTGGAGCCCATGTCGTTTGAKCGACAGTTGGTTGTGGTCGAATAGGAGCTGGTGTTACTGGGTTGGAAAGTGGAACAGGAACCGATGCAACACCAGGTGGTCCTCTAAAAGTTAAAAAAACAATAAGTAAAAAGTTGAAACAATTGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25255</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>718591</contig_pos>
        <strand>+</strand>
        <context>ATAAAAGTTT[A/G]RAAAATTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTCTGTTTCCATTTGACCTGGAAAAATAAGAATACATAAATAAAAGTTT</left_flank>
        <right_flank>AAAAATTGAAAATTAACCTCGGATTTCATTTTTCTTGATATCTGGATGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGAACCCAACACTTTCGCGATGCCTGGCAGTTGGGAAAAGCAATAATCATAAACCTTTTCTCAAGTTATTCGTTAAAATCTTTCAACTCTTTCTCAATTGTTTTTTCTCATTCTTTGCACAAAAACTCCAGAAATTTTCTGTTTCATCATGAAGAATTAACGGAGACAGGTGGGTGTCTAATCCCACTACAGTAAGACAACCGAGAGATTTGAGACATTTGTACCCTCGTACATCATGATGAGAGAAAAGTGTGCGTTTCCACTTCCTTTATTGAAAGAAAATCTTTGGAATACCCACAAAAAGTATTTTATACTTTGTAAAAATTCAGAATCAAAAAATGTTTATCACAAAAATTTAACAAGAGGAAGAGTTCAGTAAACTTTCGAAGCTTCCTTATAGTCTTTCATCCCATCGATTCTCTACGATTTTCGCAATTTGTTCTTCTTTGTCTGTTTCCATTTGACCTGGAAAAATAAGAATACATAAATAAAAGTTTGAAAAATTGAAAATTAACCTCGGATTTCATTTTTCTTGATATCTGGATGAGGGTTTCGTAGACATTCGTAGACAGAATCCATAATTATGTCTTCTTTTTCAAGATCATGTTCACTTATTTCTCTCAAGTAATCTAGATAGTATCCGATGTTTCTTTCCTGTTTATAGAGCAGTTAAGAGTTCATAATAAAAAATTAAACTCACCGAATAAAAAACTGTAACCCATCTATTCGGTTCAACCCTCTTCTTCTTTTCCTTGATTCCCAGAACTGCTCCTCCTCTTCTATGAAATGTATCTGTTTCGGGATCACGACACAAAATATACATAGGCATAAAAGATGACCCAAACTGAAATAAATTTTAAGATCTGATGGTTTTTCAAAAGGTCCTCACTTCAACTTTCAGATTTTGATCCCACGACTCTTATAAAAACTTTGTGAGGGCATTTTCGCGTCCTATAAACGAAAAAGTTCGAAAGACACGTAAACCCATATTCACCATC</canonical>
            <polymorphic>TTCGAACCCAACACTTTCGCGATGCCTGGCAGTTGGGAAAAGCAATAATCATAAACCTTTTCTCAAGTTATTCGTTAAAATCTTTCAACTCTTTCTCAATTGTTTTTTCTCATTCTTTGCACAAAAACTCCAGAAATTTTCTGTTTCATCATGAAGAATTAACGGAGACAGGTGGGTGTCTAATCCCACTACAGTAAGACAACCGAGAGATTTGAGACATTTGTACCCTCGTACATCATGATGAGAGAAAAGTGTGCGTTTCCACTTCCTTTATTGAAAGAAAATCTTTGGAATACCCACAAAAAGTATTTTATACTTTGTAAAAATTCAGAATCAAAAAATGTTTATCACAAAAATTTAACAAGAGGAAGAGTTCAGTAAACTTTCGAAGCTTCCTTATAGTCTTTCATCCCATCGATTCTCTACGATTTTCGCAATTTGTTCTTCTTTGTCTGTTTCCATTTGACCTGGAAAAATAAGAATACATAAATAAAAGTTTRAAAAATTGAAAATTAACCTCGGATTTCATTTTTCTTGATATCTGGATGAGGGTTTCGTAGACATTCGTAGACAGAATCCATAATTATGTCTTCTTTTTCAAGATCATGTTCACTTATTTCTCTCAAGTAATCTAGATAGTATCCGATGTTTCTTTCCTGTTTATAGAGCAGTTAAGAGTTCATAATAAAAAATTAAACTCACCGAATAAAAAACTGTAACCCATCTATTCGGTTCAACCCTCTTCTTCTTTTCCTTGATTCCCAGAACTGCTCCTCCTCTTCTATGAAATGTATCTGTTTCGGGATCACGACACAAAATATACATAGGCATAAAAGATGACCCAAACTGAAATAAATTTTAAGATCTGATGGTTTTTCAAAAGGTCCTCACTTCAACTTTCAGATTTTGATCCCACGACTCTTATAAAAACTTTGTGAGGGCATTTTCGCGTCCTATAAACGAAAAAGTTCGAAAGACACGTAAACCCATATTCACCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTTTCGAAGCTTCCTTATAG</pcr_primer_p1>
		<pcr_primer_p2>CTTGAGAGAAATAAGTGAACATGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAACTTTCGAAGCTTCCTTATAGTCTTTCATCCCATCGATTCTCTACGATTTTCGCAATTTGTTCTTCTTTGTCTGTTTCCATTTGACCTGGAAAAATAAGAATACATAAATAAAAGTTTGAAAAATTGAAAATTAACCTCGGATTTCATTTTTCTTGATATCTGGATGAGGGTTTCGTAGACATTCGTAGACAGAATCCATAATTATGTCTTCTTTTTCAAGATCATGTTCACTTATTTCTCTCAAG</canonical_amplicon>
		<polymorphic_amplicon>AAACTTTCGAAGCTTCCTTATAGTCTTTCATCCCATCGATTCTCTACGATTTTCGCAATTTGTTCTTCTTTGTCTGTTTCCATTTGACCTGGAAAAATAAGAATACATAAATAAAAGTTTRAAAAATTGAAAATTAACCTCGGATTTCATTTTTCTTGATATCTGGATGAGGGTTTCGTAGACATTCGTAGACAGAATCCATAATTATGTCTTCTTTTTCAAGATCATGTTCACTTATTTCTCTCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25256</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>718592</contig_pos>
        <strand>+</strand>
        <context>TAAAAGTTTR[A/G]AAAATTGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCTGTTTCCATTTGACCTGGAAAAATAAGAATACATAAATAAAAGTTTG</left_flank>
        <right_flank>AAAATTGAAAATTAACCTCGGATTTCATTTTTCTTGATATCTGGATGAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGAACCCAACACTTTCGCGATGCCTGGCAGTTGGGAAAAGCAATAATCATAAACCTTTTCTCAAGTTATTCGTTAAAATCTTTCAACTCTTTCTCAATTGTTTTTTCTCATTCTTTGCACAAAAACTCCAGAAATTTTCTGTTTCATCATGAAGAATTAACGGAGACAGGTGGGTGTCTAATCCCACTACAGTAAGACAACCGAGAGATTTGAGACATTTGTACCCTCGTACATCATGATGAGAGAAAAGTGTGCGTTTCCACTTCCTTTATTGAAAGAAAATCTTTGGAATACCCACAAAAAGTATTTTATACTTTGTAAAAATTCAGAATCAAAAAATGTTTATCACAAAAATTTAACAAGAGGAAGAGTTCAGTAAACTTTCGAAGCTTCCTTATAGTCTTTCATCCCATCGATTCTCTACGATTTTCGCAATTTGTTCTTCTTTGTCTGTTTCCATTTGACCTGGAAAAATAAGAATACATAAATAAAAGTTTGAAAAATTGAAAATTAACCTCGGATTTCATTTTTCTTGATATCTGGATGAGGGTTTCGTAGACATTCGTAGACAGAATCCATAATTATGTCTTCTTTTTCAAGATCATGTTCACTTATTTCTCTCAAGTAATCTAGATAGTATCCGATGTTTCTTTCCTGTTTATAGAGCAGTTAAGAGTTCATAATAAAAAATTAAACTCACCGAATAAAAAACTGTAACCCATCTATTCGGTTCAACCCTCTTCTTCTTTTCCTTGATTCCCAGAACTGCTCCTCCTCTTCTATGAAATGTATCTGTTTCGGGATCACGACACAAAATATACATAGGCATAAAAGATGACCCAAACTGAAATAAATTTTAAGATCTGATGGTTTTTCAAAAGGTCCTCACTTCAACTTTCAGATTTTGATCCCACGACTCTTATAAAAACTTTGTGAGGGCATTTTCGCGTCCTATAAACGAAAAAGTTCGAAAGACACGTAAACCCATATTCACCATCA</canonical>
            <polymorphic>TCGAACCCAACACTTTCGCGATGCCTGGCAGTTGGGAAAAGCAATAATCATAAACCTTTTCTCAAGTTATTCGTTAAAATCTTTCAACTCTTTCTCAATTGTTTTTTCTCATTCTTTGCACAAAAACTCCAGAAATTTTCTGTTTCATCATGAAGAATTAACGGAGACAGGTGGGTGTCTAATCCCACTACAGTAAGACAACCGAGAGATTTGAGACATTTGTACCCTCGTACATCATGATGAGAGAAAAGTGTGCGTTTCCACTTCCTTTATTGAAAGAAAATCTTTGGAATACCCACAAAAAGTATTTTATACTTTGTAAAAATTCAGAATCAAAAAATGTTTATCACAAAAATTTAACAAGAGGAAGAGTTCAGTAAACTTTCGAAGCTTCCTTATAGTCTTTCATCCCATCGATTCTCTACGATTTTCGCAATTTGTTCTTCTTTGTCTGTTTCCATTTGACCTGGAAAAATAAGAATACATAAATAAAAGTTTGRAAAATTGAAAATTAACCTCGGATTTCATTTTTCTTGATATCTGGATGAGGGTTTCGTAGACATTCGTAGACAGAATCCATAATTATGTCTTCTTTTTCAAGATCATGTTCACTTATTTCTCTCAAGTAATCTAGATAGTATCCGATGTTTCTTTCCTGTTTATAGAGCAGTTAAGAGTTCATAATAAAAAATTAAACTCACCGAATAAAAAACTGTAACCCATCTATTCGGTTCAACCCTCTTCTTCTTTTCCTTGATTCCCAGAACTGCTCCTCCTCTTCTATGAAATGTATCTGTTTCGGGATCACGACACAAAATATACATAGGCATAAAAGATGACCCAAACTGAAATAAATTTTAAGATCTGATGGTTTTTCAAAAGGTCCTCACTTCAACTTTCAGATTTTGATCCCACGACTCTTATAAAAACTTTGTGAGGGCATTTTCGCGTCCTATAAACGAAAAAGTTCGAAAGACACGTAAACCCATATTCACCATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTTTCGAAGCTTCCTTATAG</pcr_primer_p1>
		<pcr_primer_p2>CTTGAGAGAAATAAGTGAACATGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAACTTTCGAAGCTTCCTTATAGTCTTTCATCCCATCGATTCTCTACGATTTTCGCAATTTGTTCTTCTTTGTCTGTTTCCATTTGACCTGGAAAAATAAGAATACATAAATAAAAGTTTGAAAAATTGAAAATTAACCTCGGATTTCATTTTTCTTGATATCTGGATGAGGGTTTCGTAGACATTCGTAGACAGAATCCATAATTATGTCTTCTTTTTCAAGATCATGTTCACTTATTTCTCTCAAG</canonical_amplicon>
		<polymorphic_amplicon>AAACTTTCGAAGCTTCCTTATAGTCTTTCATCCCATCGATTCTCTACGATTTTCGCAATTTGTTCTTCTTTGTCTGTTTCCATTTGACCTGGAAAAATAAGAATACATAAATAAAAGTTTGRAAAATTGAAAATTAACCTCGGATTTCATTTTTCTTGATATCTGGATGAGGGTTTCGTAGACATTCGTAGACAGAATCCATAATTATGTCTTCTTTTTCAAGATCATGTTCACTTATTTCTCTCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25257</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>747421</contig_pos>
        <strand>+</strand>
        <context>AAGCGCTCAA[A/G]GAAAACAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCCGGTCATTCCGTTTGCCCATTCGTTTATTTTCACCTCAAGCGCTCAA</left_flank>
        <right_flank>GAAAACAAAAGACTTCAGATGCCATTTGCAGATGCTTTGTTCTTTCTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTAGCGTTGTAAAAATGTACTTTGTCTTCTTCTAGGAAAGCAAAAAACGAGTTGATTTTAGACCTTCTGAATTTCTCAATTTCGAGTTACCGAGTTTCAAAATTAGGAATTTAGAGCTTTCCTAACTTTTATAATTCCGGGTTTCTGACGTTCTGAAGTTCTGGATTTCTGAGATTTTAAACTCCAACAAGTTCCCGAATTTCTGATTATCTGAATTCTTGAATTTTAAATTTCAGAATCTCTAAAATTGAGTCAAAGCATGACCACGAATTTTCAAGTTGATTCAAGTTTTTCCCAACACAGAAATAAATGCATTCAAGCCAGAACCCCTGTCTGGTTGCAATCAAATGGTGAAAAAGTATGTGCTTCTCCGTAATTAGTGACCACACCAATCCGAAATCATCACTGATTCTAATCTCCAAAACACACACACTTTTCGTCCGGTTGCTCCGGTCATTCCGTTTGCCCATTCGTTTATTTTCACCTCAAGCGCTCAAAGAAAACAAAAGACTTCAGATGCCATTTGCAGATGCTTTGTTCTTTCTCTTTTTCAGTGAATCACACATTCCTCATTACACAATTTATGTTCACAGCTATTTTTCTTCCTATTAATTTTTTATTTCGAATGAAATCCTCCTTCTCTTTCTCATAATTAGAGCTAATTTTGTTGCAACTGTCACTTACATATTTCTGTGTAGATGTTTGAAAATATTATACTTTAAAAAAGAACATGTAAACAAATATTGTTTCCAATTATTTTACAGTATCAATGCGCGATTACTCATGCTCCGCTCGCGCTTTTGTTTTATTTTTGGGCATACTTCTATTTTGGGTTTCTACCGTTTTCATATACATTTTCAGATAGTTGTTGGTGAGAATGAAAAAACTACTACTCTCAATTTTTATACTAACCACTTTAACTAACTCTCAGAATACGTAAGTTCCAAAATATTGGGTACTTATTTTCGGCTGCAACTAACACACTAACATTTCAGGAA</canonical>
            <polymorphic>ATTTAGCGTTGTAAAAATGTACTTTGTCTTCTTCTAGGAAAGCAAAAAACGAGTTGATTTTAGACCTTCTGAATTTCTCAATTTCGAGTTACCGAGTTTCAAAATTAGGAATTTAGAGCTTTCCTAACTTTTATAATTCCGGGTTTCTGACGTTCTGAAGTTCTGGATTTCTGAGATTTTAAACTCCAACAAGTTCCCGAATTTCTGATTATCTGAATTCTTGAATTTTAAATTTCAGAATCTCTAAAATTGAGTCAAAGCATGACCACGAATTTTCAAGTTGATTCAAGTTTTTCCCAACACAGAAATAAATGCATTCAAGCCAGAACCCCTGTCTGGTTGCAATCAAATGGTGAAAAAGTATGTGCTTCTCCGTAATTAGTGACCACACCAATCCGAAATCATCACTGATTCTAATCTCCAAAACACACACACTTTTCGTCCGGTTGCTCCGGTCATTCCGTTTGCCCATTCGTTTATTTTCACCTCAAGCGCTCAARGAAAACAAAAGACTTCAGATGCCATTTGCAGATGCTTTGTTCTTTCTCTTTTTCAGTGAATCACACATTCCTCATTACACAATTTATGTTCACAGCTATTTTTCTTCCTATTAATTTTTTATTTCGAATGAAATCCTCCTTCTCTTTCTCATAATTAGAGCTAATTTTGTTGCAACTGTCACTTACATATTTCTGTGTAGATGTTTGAAAATATTATACTTTAAAAAAGAACATGTAAACAAATATTGTTTCCAATTATTTTACAGTATCAATGCGCGATTACTCATGCTCCGCTCGCGCTTTTGTTTTATTTTTGGGCATACTTCTATTTTGGGTTTCTACCGTTTTCATATACATTTTCAGATAGTTGTTGGTGAGAATGAAAAAACTACTACTCTCAATTTTTATACTAACCACTTTAACTAACTCTCAGAATACGTAAGTTCCAAAATATTGGGTACTTATTTTCGGCTGCAACTAACACACTAACATTTCAGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCACTGATTCTAATCTCCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TATGAGAAAGAGAAGGAGGATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCACTGATTCTAATCTCCAAAACACACACACTTTTCGTCCGGTTGCTCCGGTCATTCCGTTTGCCCATTCGTTTATTTTCACCTCAAGCGCTCAAAGAAAACAAAAGACTTCAGATGCCATTTGCAGATGCTTTGTTCTTTCTCTTTTTCAGTGAATCACACATTCCTCATTACACAATTTATGTTCACAGCTATTTTTCTTCCTATTAATTTTTTATTTCGAATGAAATCCTCCTTCTCTTTCTCATA</canonical_amplicon>
		<polymorphic_amplicon>TCACTGATTCTAATCTCCAAAACACACACACTTTTCGTCCGGTTGCTCCGGTCATTCCGTTTGCCCATTCGTTTATTTTCACCTCAAGCGCTCAARGAAAACAAAAGACTTCAGATGCCATTTGCAGATGCTTTGTTCTTTCTCTTTTTCAGTGAATCACACATTCCTCATTACACAATTTATGTTCACAGCTATTTTTCTTCCTATTAATTTTTTATTTCGAATGAAATCCTCCTTCTCTTTCTCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25258</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>865485</contig_pos>
        <strand>+</strand>
        <context>CATAAATTTA[A/G]CGACTCCACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAGAAGTTTCGAAATAAGAGTTTGAACTTTATCGTCCTCCATAAATTTA</left_flank>
        <right_flank>CGACTCCACTGAAATTCTTTTTCAATTCTTCCTTATCTTCAGGTTTAAGA</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGACGCTGAAATTCAAACATTGACTCCTGAAACTAAAAAGTTTGTGACTGAATTGCTGGGAATTGGACGCGCAATTTACACTGCTCAAATAGTTGGAGTTCCACTTGACCCCAAAGAAGTTCTTCCAGTTTTCGCAAAGTATGATTTTTAGGAATTAACTTTCTTCTCAATCAGTTTTGTTTCAGGCAATTCCCATCATTCAAATCTCTTCCGGATACTAACAAAGAAGAATTGAAGAACGCATTCCTCGGTCTTTACAAATTCGCATCCAATGATAAAATCAAGGTCGAGATAGATAAGTTGTTGTGATAACATTGACTGTGATTTGTGTTTTCTTGGTTGTTTTTTGTTTAACAACAATTTTCAAAGATAAAGAATTTATTAGCTTCTATAAAAGTTTTCATGAAAATGTACATTATTATAATTTAATGCTCATCGTTAGTCTTCTCGAGAAGTTTCGAAATAAGAGTTTGAACTTTATCGTCCTCCATAAATTTAACGACTCCACTGAAATTCTTTTTCAATTCTTCCTTATCTTCAGGTTTAAGAGCCTTGTAGGAGGCGGCTTGACTGAAAACAAAACATATATCCGATATTATAATTCTGAAATGACACTTACGTCTCGATGAGAAGCTTGATTTCGGAGCTGCTAATTTTCTCTCCATTGACAGATCTGGCATACAATCCTCTTCCACCGGCAATCAATTCTTGAATGAATGCTTTTGGCTCCTCACTCATTCCATTGATCTTCTTTTGCAATTTAGCCTGAAGCTTCTCAGCTTTCTCTCCCAATTCTGGTGATTTTTCCTTCAGAGCAGCAATTAATTGGTCTTCGTTCTTGAAATCCTTGTAGTTCTTGAAAACATCTTTCACTTTTTCCTTCTCATCACCAGACAAGTCCTTGTAGGCTTCAACGACTTCAGAAGGGAGAATATCCTTATGTTCCTTGAGAAGTTGAGTGAATAGGGATGGTTCTCCGGTTGGTGCAGCCAGTGAAAA</canonical>
            <polymorphic>TGGACGCTGAAATTCAAACATTGACTCCTGAAACTAAAAAGTTTGTGACTGAATTGCTGGGAATTGGACGCGCAATTTACACTGCTCAAATAGTTGGAGTTCCACTTGACCCCAAAGAAGTTCTTCCAGTTTTCGCAAAGTATGATTTTTAGGAATTAACTTTCTTCTCAATCAGTTTTGTTTCAGGCAATTCCCATCATTCAAATCTCTTCCGGATACTAACAAAGAAGAATTGAAGAACGCATTCCTCGGTCTTTACAAATTCGCATCCAATGATAAAATCAAGGTCGAGATAGATAAGTTGTTGTGATAACATTGACTGTGATTTGTGTTTTCTTGGTTGTTTTTTGTTTAACAACAATTTTCAAAGATAAAGAATTTATTAGCTTCTATAAAAGTTTTCATGAAAATGTACATTATTATAATTTAATGCTCATCGTTAGTCTTCTCGAGAAGTTTCGAAATAAGAGTTTGAACTTTATCGTCCTCCATAAATTTARCGACTCCACTGAAATTCTTTTTCAATTCTTCCTTATCTTCAGGTTTAAGAGCCTTGTAGGAGGCGGCTTGACTGAAAACAAAACATATATCCGATATTATAATTCTGAAATGACACTTACGTCTCGATGAGAAGCTTGATTTCGGAGCTGCTAATTTTCTCTCCATTGACAGATCTGGCATACAATCCTCTTCCACCGGCAATCAATTCTTGAATGAATGCTTTTGGCTCCTCACTCATTCCATTGATCTTCTTTTGCAATTTAGCCTGAAGCTTCTCAGCTTTCTCTCCCAATTCTGGTGATTTTTCCTTCAGAGCAGCAATTAATTGGTCTTCGTTCTTGAAATCCTTGTAGTTCTTGAAAACATCTTTCACTTTTTCCTTCTCATCACCAGACAAGTCCTTGTAGGCTTCAACGACTTCAGAAGGGAGAATATCCTTATGTTCCTTGAGAAGTTGAGTGAATAGGGATGGTTCTCCGGTTGGTGCAGCCAGTGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>278 196 177 156 75 70 48</canonical_bands>
                <polymorphic_bands>278 196 177 156 118 75</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAATGCTCATCGTTAGTCTTC</pcr_primer_p1>
		<pcr_primer_p2>TCTGTCAATGGAGAGAAAATTAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTAATGCTCATCGTTAGTCTTCTCGAGAAGTTTCGAAATAAGAGTTTGAACTTTATCGTCCTCCATAAATTTAACGACTCCACTGAAATTCTTTTTCAATTCTTCCTTATCTTCAGGTTTAAGAGCCTTGTAGGAGGCGGCTTGACTGAAAACAAAACATATATCCGATATTATAATTCTGAAATGACACTTACGTCTCGATGAGAAGCTTGATTTCGGAGCTGCTAATTTTCTCTCCATTGACAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTAATGCTCATCGTTAGTCTTCTCGAGAAGTTTCGAAATAAGAGTTTGAACTTTATCGTCCTCCATAAATTTARCGACTCCACTGAAATTCTTTTTCAATTCTTCCTTATCTTCAGGTTTAAGAGCCTTGTAGGAGGCGGCTTGACTGAAAACAAAACATATATCCGATATTATAATTCTGAAATGACACTTACGTCTCGATGAGAAGCTTGATTTCGGAGCTGCTAATTTTCTCTCCATTGACAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25259</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>865564</contig_pos>
        <strand>+</strand>
        <context>TGACTGAAAA[A/C]ARAACATATA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCCTTATCTTCAGGTTTAAGAGCCTTGTAGGAGGCGGCTTGACTGAAAA</left_flank>
        <right_flank>AAAACATATATCCGATATTATAATTCTGAAATGACACTTACGTCTCGATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTGCTCAAATAGTTGGAGTTCCACTTGACCCCAAAGAAGTTCTTCCAGTTTTCGCAAAGTATGATTTTTAGGAATTAACTTTCTTCTCAATCAGTTTTGTTTCAGGCAATTCCCATCATTCAAATCTCTTCCGGATACTAACAAAGAAGAATTGAAGAACGCATTCCTCGGTCTTTACAAATTCGCATCCAATGATAAAATCAAGGTCGAGATAGATAAGTTGTTGTGATAACATTGACTGTGATTTGTGTTTTCTTGGTTGTTTTTTGTTTAACAACAATTTTCAAAGATAAAGAATTTATTAGCTTCTATAAAAGTTTTCATGAAAATGTACATTATTATAATTTAATGCTCATCGTTAGTCTTCTCGAGAAGTTTCGAAATAAGAGTTTGAACTTTATCGTCCTCCATAAATTTAACGACTCCACTGAAATTCTTTTTCAATTCTTCCTTATCTTCAGGTTTAAGAGCCTTGTAGGAGGCGGCTTGACTGAAAACAAAACATATATCCGATATTATAATTCTGAAATGACACTTACGTCTCGATGAGAAGCTTGATTTCGGAGCTGCTAATTTTCTCTCCATTGACAGATCTGGCATACAATCCTCTTCCACCGGCAATCAATTCTTGAATGAATGCTTTTGGCTCCTCACTCATTCCATTGATCTTCTTTTGCAATTTAGCCTGAAGCTTCTCAGCTTTCTCTCCCAATTCTGGTGATTTTTCCTTCAGAGCAGCAATTAATTGGTCTTCGTTCTTGAAATCCTTGTAGTTCTTGAAAACATCTTTCACTTTTTCCTTCTCATCACCAGACAAGTCCTTGTAGGCTTCAACGACTTCAGAAGGGAGAATATCCTTATGTTCCTTGAGAAGTTGAGTGAATAGGGATGGTTCTCCGGTTGGTGCAGCCAGTGAAAAGCCAACGAATGCAACGAAAAAGAGGTTGAATGCAAGAAGACGTGACATGTTGATGTTGCTCATCGTTTCTATCAAAACT</canonical>
            <polymorphic>CACTGCTCAAATAGTTGGAGTTCCACTTGACCCCAAAGAAGTTCTTCCAGTTTTCGCAAAGTATGATTTTTAGGAATTAACTTTCTTCTCAATCAGTTTTGTTTCAGGCAATTCCCATCATTCAAATCTCTTCCGGATACTAACAAAGAAGAATTGAAGAACGCATTCCTCGGTCTTTACAAATTCGCATCCAATGATAAAATCAAGGTCGAGATAGATAAGTTGTTGTGATAACATTGACTGTGATTTGTGTTTTCTTGGTTGTTTTTTGTTTAACAACAATTTTCAAAGATAAAGAATTTATTAGCTTCTATAAAAGTTTTCATGAAAATGTACATTATTATAATTTAATGCTCATCGTTAGTCTTCTCGAGAAGTTTCGAAATAAGAGTTTGAACTTTATCGTCCTCCATAAATTTAACGACTCCACTGAAATTCTTTTTCAATTCTTCCTTATCTTCAGGTTTAAGAGCCTTGTAGGAGGCGGCTTGACTGAAAAMAAAACATATATCCGATATTATAATTCTGAAATGACACTTACGTCTCGATGAGAAGCTTGATTTCGGAGCTGCTAATTTTCTCTCCATTGACAGATCTGGCATACAATCCTCTTCCACCGGCAATCAATTCTTGAATGAATGCTTTTGGCTCCTCACTCATTCCATTGATCTTCTTTTGCAATTTAGCCTGAAGCTTCTCAGCTTTCTCTCCCAATTCTGGTGATTTTTCCTTCAGAGCAGCAATTAATTGGTCTTCGTTCTTGAAATCCTTGTAGTTCTTGAAAACATCTTTCACTTTTTCCTTCTCATCACCAGACAAGTCCTTGTAGGCTTCAACGACTTCAGAAGGGAGAATATCCTTATGTTCCTTGAGAAGTTGAGTGAATAGGGATGGTTCTCCGGTTGGTGCAGCCAGTGAAAAGCCAACGAATGCAACGAAAAAGAGGTTGAATGCAAGAAGACGTGACATGTTGATGTTGCTCATCGTTTCTATCAAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAATGCTCATCGTTAGTCTTC</pcr_primer_p1>
		<pcr_primer_p2>TCTGTCAATGGAGAGAAAATTAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTAATGCTCATCGTTAGTCTTCTCGAGAAGTTTCGAAATAAGAGTTTGAACTTTATCGTCCTCCATAAATTTAACGACTCCACTGAAATTCTTTTTCAATTCTTCCTTATCTTCAGGTTTAAGAGCCTTGTAGGAGGCGGCTTGACTGAAAACAAAACATATATCCGATATTATAATTCTGAAATGACACTTACGTCTCGATGAGAAGCTTGATTTCGGAGCTGCTAATTTTCTCTCCATTGACAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTAATGCTCATCGTTAGTCTTCTCGAGAAGTTTCGAAATAAGAGTTTGAACTTTATCGTCCTCCATAAATTTAACGACTCCACTGAAATTCTTTTTCAATTCTTCCTTATCTTCAGGTTTAAGAGCCTTGTAGGAGGCGGCTTGACTGAAAAMAAAACATATATCCGATATTATAATTCTGAAATGACACTTACGTCTCGATGAGAAGCTTGATTTCGGAGCTGCTAATTTTCTCTCCATTGACAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25260</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>865566</contig_pos>
        <strand>+</strand>
        <context>ACTGAAAAMA[A/G]AACATATATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTTATCTTCAGGTTTAAGAGCCTTGTAGGAGGCGGCTTGACTGAAAACA</left_flank>
        <right_flank>AACATATATCCGATATTATAATTCTGAAATGACACTTACGTCTCGATGAG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGCTCAAATAGTTGGAGTTCCACTTGACCCCAAAGAAGTTCTTCCAGTTTTCGCAAAGTATGATTTTTAGGAATTAACTTTCTTCTCAATCAGTTTTGTTTCAGGCAATTCCCATCATTCAAATCTCTTCCGGATACTAACAAAGAAGAATTGAAGAACGCATTCCTCGGTCTTTACAAATTCGCATCCAATGATAAAATCAAGGTCGAGATAGATAAGTTGTTGTGATAACATTGACTGTGATTTGTGTTTTCTTGGTTGTTTTTTGTTTAACAACAATTTTCAAAGATAAAGAATTTATTAGCTTCTATAAAAGTTTTCATGAAAATGTACATTATTATAATTTAATGCTCATCGTTAGTCTTCTCGAGAAGTTTCGAAATAAGAGTTTGAACTTTATCGTCCTCCATAAATTTAACGACTCCACTGAAATTCTTTTTCAATTCTTCCTTATCTTCAGGTTTAAGAGCCTTGTAGGAGGCGGCTTGACTGAAAACAAAACATATATCCGATATTATAATTCTGAAATGACACTTACGTCTCGATGAGAAGCTTGATTTCGGAGCTGCTAATTTTCTCTCCATTGACAGATCTGGCATACAATCCTCTTCCACCGGCAATCAATTCTTGAATGAATGCTTTTGGCTCCTCACTCATTCCATTGATCTTCTTTTGCAATTTAGCCTGAAGCTTCTCAGCTTTCTCTCCCAATTCTGGTGATTTTTCCTTCAGAGCAGCAATTAATTGGTCTTCGTTCTTGAAATCCTTGTAGTTCTTGAAAACATCTTTCACTTTTTCCTTCTCATCACCAGACAAGTCCTTGTAGGCTTCAACGACTTCAGAAGGGAGAATATCCTTATGTTCCTTGAGAAGTTGAGTGAATAGGGATGGTTCTCCGGTTGGTGCAGCCAGTGAAAAGCCAACGAATGCAACGAAAAAGAGGTTGAATGCAAGAAGACGTGACATGTTGATGTTGCTCATCGTTTCTATCAAAACTCT</canonical>
            <polymorphic>CTGCTCAAATAGTTGGAGTTCCACTTGACCCCAAAGAAGTTCTTCCAGTTTTCGCAAAGTATGATTTTTAGGAATTAACTTTCTTCTCAATCAGTTTTGTTTCAGGCAATTCCCATCATTCAAATCTCTTCCGGATACTAACAAAGAAGAATTGAAGAACGCATTCCTCGGTCTTTACAAATTCGCATCCAATGATAAAATCAAGGTCGAGATAGATAAGTTGTTGTGATAACATTGACTGTGATTTGTGTTTTCTTGGTTGTTTTTTGTTTAACAACAATTTTCAAAGATAAAGAATTTATTAGCTTCTATAAAAGTTTTCATGAAAATGTACATTATTATAATTTAATGCTCATCGTTAGTCTTCTCGAGAAGTTTCGAAATAAGAGTTTGAACTTTATCGTCCTCCATAAATTTAACGACTCCACTGAAATTCTTTTTCAATTCTTCCTTATCTTCAGGTTTAAGAGCCTTGTAGGAGGCGGCTTGACTGAAAACARAACATATATCCGATATTATAATTCTGAAATGACACTTACGTCTCGATGAGAAGCTTGATTTCGGAGCTGCTAATTTTCTCTCCATTGACAGATCTGGCATACAATCCTCTTCCACCGGCAATCAATTCTTGAATGAATGCTTTTGGCTCCTCACTCATTCCATTGATCTTCTTTTGCAATTTAGCCTGAAGCTTCTCAGCTTTCTCTCCCAATTCTGGTGATTTTTCCTTCAGAGCAGCAATTAATTGGTCTTCGTTCTTGAAATCCTTGTAGTTCTTGAAAACATCTTTCACTTTTTCCTTCTCATCACCAGACAAGTCCTTGTAGGCTTCAACGACTTCAGAAGGGAGAATATCCTTATGTTCCTTGAGAAGTTGAGTGAATAGGGATGGTTCTCCGGTTGGTGCAGCCAGTGAAAAGCCAACGAATGCAACGAAAAAGAGGTTGAATGCAAGAAGACGTGACATGTTGATGTTGCTCATCGTTTCTATCAAAACTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAATGCTCATCGTTAGTCTTC</pcr_primer_p1>
		<pcr_primer_p2>TCTGTCAATGGAGAGAAAATTAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTAATGCTCATCGTTAGTCTTCTCGAGAAGTTTCGAAATAAGAGTTTGAACTTTATCGTCCTCCATAAATTTAACGACTCCACTGAAATTCTTTTTCAATTCTTCCTTATCTTCAGGTTTAAGAGCCTTGTAGGAGGCGGCTTGACTGAAAACAAAACATATATCCGATATTATAATTCTGAAATGACACTTACGTCTCGATGAGAAGCTTGATTTCGGAGCTGCTAATTTTCTCTCCATTGACAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTAATGCTCATCGTTAGTCTTCTCGAGAAGTTTCGAAATAAGAGTTTGAACTTTATCGTCCTCCATAAATTTAACGACTCCACTGAAATTCTTTTTCAATTCTTCCTTATCTTCAGGTTTAAGAGCCTTGTAGGAGGCGGCTTGACTGAAAACARAACATATATCCGATATTATAATTCTGAAATGACACTTACGTCTCGATGAGAAGCTTGATTTCGGAGCTGCTAATTTTCTCTCCATTGACAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25261</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>882530</contig_pos>
        <strand></strand>
        <context>tgaggtccaa[G/T]ttgacggttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGATAAATTTTTGATACCTTTCACAGGAAGCAAGATAATTGAGGTCCAA</left_flank>
        <right_flank>TTGACGGTTTGAGTGGACTTCCATTAGAGGAAATGCGGTATCACTTGGTA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAGAAATACACAGTGTGCAGCAGTCATTGCAATACTTGGAGCAATAAGGACTCCCCCACAAACATTTGTGTAACCGTCTGGGAAACGAGTGATAACCGAAACCAGTGAAAGTGTATCTGAGAATGGAATTTGATTGAATCATTAAAAAATTATTCACCTAGTGAATTGGCTCTGAATCCATCGATTATTGCGAATACAACCTGGAAAAAGGGAGAAAAGAAAAGAAATAGAAACAATACTTTCATGTTGAATCAGTAAAACAAAATCTTTCAGGATATATACCAAAATCTATGTTGTTGTAGGAGATTATGTTTAGAATCAACATTTCCTATTTCCTCTAATAGAAGCCCACTCAACTTTGATCTCAATCATCTCGATTCCTGTTAAAGATTGCAAGAAATTGTCAATTGATAAAATGTTGGTGATATTGTGATAATAATTTATAAGTTGATAAATTTTTGATACCTTTCACAGGAAGCAAGATAATTGAGGTCCAAGTTGACGGTTTGAGTGGACTTCCATTAGAGGAAATGCGGTATCACTTGGTATTTTGAAACATCTTTCAAAACCTTCGATTAGCCATGAAAAAAGGCGTTGGCTAAAAATGCTAAGTGTAAATGCTGCTGATCGGTCATTGGTTGAAGACTTATGCACATTTTCAATTTCCTGTCTTACCTAAATTGATCAAATCTTTTTAATTCTGTGTGCCCCTCCTGCGTATGTGGTACTGTAAGGACATTTTTCCTCAGTTCAACTGATAAGAGACGATGAGTCTCTAGGTCTCGCAATCACACAACGCTTCTCATAAACCTCCTCTCTCATTTACTCTCTTCCAGAAACATAAAATTCAATTTGTATTGAAGTCTTCTCGAAGATTCAATTCCTCAACTTTTCTCACATCATTAATTTTGATTTCGTATACTTTTCAGACACGAAAATGCAAATCAATCTTGTTTGGTTTTTGCTATCACCTCTTTTCATTGAAGTCGAATCACCTG</canonical>
            <polymorphic>TTCAGAAATACACAGTGTGCAGCAGTCATTGCAATACTTGGAGCAATAAGGACTCCCCCACAAACATTTGTGTAACCGTCTGGGAAACGAGTGATAACCGAAACCAGTGAAAGTGTATCTGAGAATGGAATTTGATTGAATCATTAAAAAATTATTCACCTAGTGAATTGGCTCTGAATCCATCGATTATTGCGAATACAACCTGGAAAAAGGGAGAAAAGAAAAGAAATAGAAACAATACTTTCATGTTGAATCAGTAAAACAAAATCTTTCAGGATATATACCAAAATCTATGTTGTTGTAGGAGATTATGTTTAGAATCAACATTTCCTATTTCCTCTAATAGAAGCCCACTCAACTTTGATCTCAATCATCTCGATTCCTGTTAAAGATTGCAAGAAATTGTCAATTGATAAAATGTTGGTGATATTGTGATAATAATTTATAAGTTGATAAATTTTTGATACCTTTCACAGGAAGCAAGATAATTGAGGTCCAAKTTGACGGTTTGAGTGGACTTCCATTAGAGGAAATGCGGTATCACTTGGTATTTTGAAACATCTTTCAAAACCTTCGATTAGCCATGAAAAAAGGCGTTGGCTAAAAATGCTAAGTGTAAATGCTGCTGATCGGTCATTGGTTGAAGACTTATGCACATTTTCAATTTCCTGTCTTACCTAAATTGATCAAATCTTTTTAATTCTGTGTGCCCCTCCTGCGTATGTGGTACTGTAAGGACATTTTTCCTCAGTTCAACTGATAAGAGACGATGAGTCTCTAGGTCTCGCAATCACACAACGCTTCTCATAAACCTCCTCTCTCATTTACTCTCTTCCAGAAACATAAAATTCAATTTGTATTGAAGTCTTCTCGAAGATTCAATTCCTCAACTTTTCTCACATCATTAATTTTGATTTCGTATACTTTTCAGACACGAAAATGCAAATCAATCTTGTTTGGTTTTTGCTATCACCTCTTTTCATTGAAGTCGAATCACCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 406 79 13</canonical_bands>
                <polymorphic_bands>515 406 79</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTTAGAATCAACATTTCCTATTT</pcr_primer_p1>
		<pcr_primer_p2>GTTTCAAAATACCAAGTGATACC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTTTAGAATCAACATTTCCTATTTCCTCTAATAGAAGCCCACTCAACTTTGATCTCAATCATCTCGATTCCTGTTAAAGATTGCAAGAAATTGTCAATTGATAAAATGTTGGTGATATTGTGATAATAATTTATAAGTTGATAAATTTTTGATACCTTTCACAGGAAGCAAGATAATTGAGGTCCAAGTTGACGGTTTGAGTGGACTTCCATTAGAGGAAATGCGGTATCACTTGGTATTTTGAAAC</canonical_amplicon>
		<polymorphic_amplicon>TGTTTAGAATCAACATTTCCTATTTCCTCTAATAGAAGCCCACTCAACTTTGATCTCAATCATCTCGATTCCTGTTAAAGATTGCAAGAAATTGTCAATTGATAAAATGTTGGTGATATTGTGATAATAATTTATAAGTTGATAAATTTTTGATACCTTTCACAGGAAGCAAGATAATTGAGGTCCAAKTTGACGGTTTGAGTGGACTTCCATTAGAGGAAATGCGGTATCACTTGGTATTTTGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25262</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>882557</contig_pos>
        <strand>+</strand>
        <context>acttccatta[A/G]aggAAATGCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGCAAGATAATTGAGGTCCAAGTTGACGGTTTGAGTGGACTTCCATTA</left_flank>
        <right_flank>AGGAAATGCGGTATCACTTGGTATTTTGAAACATCTTTCAAAACCTTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGCAATACTTGGAGCAATAAGGACTCCCCCACAAACATTTGTGTAACCGTCTGGGAAACGAGTGATAACCGAAACCAGTGAAAGTGTATCTGAGAATGGAATTTGATTGAATCATTAAAAAATTATTCACCTAGTGAATTGGCTCTGAATCCATCGATTATTGCGAATACAACCTGGAAAAAGGGAGAAAAGAAAAGAAATAGAAACAATACTTTCATGTTGAATCAGTAAAACAAAATCTTTCAGGATATATACCAAAATCTATGTTGTTGTAGGAGATTATGTTTAGAATCAACATTTCCTATTTCCTCTAATAGAAGCCCACTCAACTTTGATCTCAATCATCTCGATTCCTGTTAAAGATTGCAAGAAATTGTCAATTGATAAAATGTTGGTGATATTGTGATAATAATTTATAAGTTGATAAATTTTTGATACCTTTCACAGGAAGCAAGATAATTGAGGTCCAAGTTGACGGTTTGAGTGGACTTCCATTAGAGGAAATGCGGTATCACTTGGTATTTTGAAACATCTTTCAAAACCTTCGATTAGCCATGAAAAAAGGCGTTGGCTAAAAATGCTAAGTGTAAATGCTGCTGATCGGTCATTGGTTGAAGACTTATGCACATTTTCAATTTCCTGTCTTACCTAAATTGATCAAATCTTTTTAATTCTGTGTGCCCCTCCTGCGTATGTGGTACTGTAAGGACATTTTTCCTCAGTTCAACTGATAAGAGACGATGAGTCTCTAGGTCTCGCAATCACACAACGCTTCTCATAAACCTCCTCTCTCATTTACTCTCTTCCAGAAACATAAAATTCAATTTGTATTGAAGTCTTCTCGAAGATTCAATTCCTCAACTTTTCTCACATCATTAATTTTGATTTCGTATACTTTTCAGACACGAAAATGCAAATCAATCTTGTTTGGTTTTTGCTATCACCTCTTTTCATTGAAGTCGAATCACCTGAATATAGAGGATGCGCTGAATTCCAGA</canonical>
            <polymorphic>ATTGCAATACTTGGAGCAATAAGGACTCCCCCACAAACATTTGTGTAACCGTCTGGGAAACGAGTGATAACCGAAACCAGTGAAAGTGTATCTGAGAATGGAATTTGATTGAATCATTAAAAAATTATTCACCTAGTGAATTGGCTCTGAATCCATCGATTATTGCGAATACAACCTGGAAAAAGGGAGAAAAGAAAAGAAATAGAAACAATACTTTCATGTTGAATCAGTAAAACAAAATCTTTCAGGATATATACCAAAATCTATGTTGTTGTAGGAGATTATGTTTAGAATCAACATTTCCTATTTCCTCTAATAGAAGCCCACTCAACTTTGATCTCAATCATCTCGATTCCTGTTAAAGATTGCAAGAAATTGTCAATTGATAAAATGTTGGTGATATTGTGATAATAATTTATAAGTTGATAAATTTTTGATACCTTTCACAGGAAGCAAGATAATTGAGGTCCAAGTTGACGGTTTGAGTGGACTTCCATTARAGGAAATGCGGTATCACTTGGTATTTTGAAACATCTTTCAAAACCTTCGATTAGCCATGAAAAAAGGCGTTGGCTAAAAATGCTAAGTGTAAATGCTGCTGATCGGTCATTGGTTGAAGACTTATGCACATTTTCAATTTCCTGTCTTACCTAAATTGATCAAATCTTTTTAATTCTGTGTGCCCCTCCTGCGTATGTGGTACTGTAAGGACATTTTTCCTCAGTTCAACTGATAAGAGACGATGAGTCTCTAGGTCTCGCAATCACACAACGCTTCTCATAAACCTCCTCTCTCATTTACTCTCTTCCAGAAACATAAAATTCAATTTGTATTGAAGTCTTCTCGAAGATTCAATTCCTCAACTTTTCTCACATCATTAATTTTGATTTCGTATACTTTTCAGACACGAAAATGCAAATCAATCTTGTTTGGTTTTTGCTATCACCTCTTTTCATTGAAGTCGAATCACCTGAATATAGAGGATGCGCTGAATTCCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTAGAATCAACATTTCCTATTT</pcr_primer_p1>
		<pcr_primer_p2>TAATCGAAGGTTTTGAAAGATG</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>TGTTTAGAATCAACATTTCCTATTTCCTCTAATAGAAGCCCACTCAACTTTGATCTCAATCATCTCGATTCCTGTTAAAGATTGCAAGAAATTGTCAATTGATAAAATGTTGGTGATATTGTGATAATAATTTATAAGTTGATAAATTTTTGATACCTTTCACAGGAAGCAAGATAATTGAGGTCCAAGTTGACGGTTTGAGTGGACTTCCATTAGAGGAAATGCGGTATCACTTGGTATTTTGAAACATCTTTCAAAACCTTCGATTA</canonical_amplicon>
		<polymorphic_amplicon>TGTTTAGAATCAACATTTCCTATTTCCTCTAATAGAAGCCCACTCAACTTTGATCTCAATCATCTCGATTCCTGTTAAAGATTGCAAGAAATTGTCAATTGATAAAATGTTGGTGATATTGTGATAATAATTTATAAGTTGATAAATTTTTGATACCTTTCACAGGAAGCAAGATAATTGAGGTCCAAGTTGACGGTTTGAGTGGACTTCCATTARAGGAAATGCGGTATCACTTGGTATTTTGAAACATCTTTCAAAACCTTCGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25263</snp_id>
        <super_contig>c001101125.Contig1</super_contig>
        <contig_pos>884839</contig_pos>
        <strand></strand>
        <context>TGCCACGATT[G/T]CTACCGCTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACGAATGGCTCCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATT</left_flank>
        <right_flank>CTACCGCTATATGCTATTGTCTACAAAAATATCGCGATAAGTACAGGAGG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAGTGTTATTAAACCTCCTTTCAGAATCCAGTTATAGCACATACTCCGAAAATAGTGAAGGAGCATTTACCAACTTTAACTACTACTATCCAATGAACAGTAAGATGATTTTGGGAAGAGGTAATTACAAGTGAAAATATAAATTTCAGAAACCGCTGTAGTTTTTCTGGAACTTAAGGAACAGCCTAAGATCAAAACAAACCTGGACAATCTTTACCCTTGTTGCAAATTCCATAGAAGTGGGTTACTTTTTTTTTGAATCCGCTTTTGATGATATGTTGGTTTCAGTTGAAGTTTCGTCATGTTTGAATAACTATATGAATTCATACGAGGACATATCTAAATGCCTCTCAAATATTGTGACGCAAGATAAAAAATGCCTCAGTCAACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAACGCCATGGTACTACGAATGGCTCCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATATGCTATTGTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTCCGAGCCAAACACGACAGCGGACTGATGCGTTTGATTTATTATTAATCTTGTTCTTGTAGTTCCTGTTGATGTTAATTTAAATAAATTGTTAAACCTGTATTAGAAAGGCTCCTTCAAAGAAAGGGTCCTCTAATAGAAGGGCCTTTCGAGAGGAACTTATAATCATTGAACGTCTCCTTTCAGAATGAGTTGTTTGATTTTGGTGAAATTGATAGATTTTGAAAAATATATGAGTCCCCTCTAATTGAAGGACACCTGTAATAAAAGGGCCCTCCGGAGGTACCGTGGACGTCCCTTACAACGCCTCGTACGTGGGTGAAACTTCTGACCCACAAACTGCATTTTACCATATTTTACAGAGAATATGAATTTGATAAACTTATAAAACACTTGGTTTCCATCTATACAAGGCAAGCCATATAGAAAACAGGAAAATCAA</canonical>
            <polymorphic>GAGAGTGTTATTAAACCTCCTTTCAGAATCCAGTTATAGCACATACTCCGAAAATAGTGAAGGAGCATTTACCAACTTTAACTACTACTATCCAATGAACAGTAAGATGATTTTGGGAAGAGGTAATTACAAGTGAAAATATAAATTTCAGAAACCGCTGTAGTTTTTCTGGAACTTAAGGAACAGCCTAAGATCAAAACAAACCTGGACAATCTTTACCCTTGTTGCAAATTCCATAGAAGTGGGTTACTTTTTTTTTGAATCCGCTTTTGATGATATGTTGGTTTCAGTTGAAGTTTCGTCATGTTTGAATAACTATATGAATTCATACGAGGACATATCTAAATGCCTCTCAAATATTGTGACGCAAGATAAAAAATGCCTCAGTCAACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAACGCCATGGTACTACGAATGGCTCCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTKCTACCGCTATATGCTATTGTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTCCGAGCCAAACACGACAGCGGACTGATGCGTTTGATTTATTATTAATCTTGTTCTTGTAGTTCCTGTTGATGTTAATTTAAATAAATTGTTAAACCTGTATTAGAAAGGCTCCTTCAAAGAAAGGGTCCTCTAATAGAAGGGCCTTTCGAGAGGAACTTATAATCATTGAACGTCTCCTTTCAGAATGAGTTGTTTGATTTTGGTGAAATTGATAGATTTTGAAAAATATATGAGTCCCCTCTAATTGAAGGACACCTGTAATAAAAGGGCCCTCCGGAGGTACCGTGGACGTCCCTTACAACGCCTCGTACGTGGGTGAAACTTCTGACCCACAAACTGCATTTTACCATATTTTACAGAGAATATGAATTTGATAAACTTATAAAACACTTGGTTTCCATCTATACAAGGCAAGCCATATAGAAAACAGGAAAATCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAATTCATACGAGGACATATCTA</pcr_primer_p1>
		<pcr_primer_p2>GAAGTAGACACCCTCCTGTACTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TGAATTCATACGAGGACATATCTAAATGCCTCTCAAATATTGTGACGCAAGATAAAAAATGCCTCAGTCAACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAACGCCATGGTACTACGAATGGCTCCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTGCTACCGCTATATGCTATTGTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTC</canonical_amplicon>
		<polymorphic_amplicon>TGAATTCATACGAGGACATATCTAAATGCCTCTCAAATATTGTGACGCAAGATAAAAAATGCCTCAGTCAACTTCAAAAAGCGAAGAGAGTTCTTGAAAGAAACGAAGAAAATCAAACGCCATGGTACTACGAATGGCTCCGCTATATGCTTGAAATATCATGCTATCTTGCCACGATTKCTACCGCTATATGCTATTGTCTACAAAAATATCGCGATAAGTACAGGAGGGTGTCTACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25264</snp_id>
        <super_contig>c001200895.Contig2</super_contig>
        <contig_pos>17868</contig_pos>
        <strand>+</strand>
        <context>ACATTTACGT[C/T]CAATCATTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCCTCGACTTTCGCTCGAGTAATTTCTCTGACCTGAATTACATTTACGT</left_flank>
        <right_flank>CAATCATTTCTCTGATTTCTCATACCTGCCAGACTGGTTCGCCGTCTTCA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGTGTTAGAAGACCGCTCAAATCAATGGTCTAAGAAACAGAAATTAACAAAGAACATTTTTATTATCAAATGCACACGAACAAAAGGTTATACGACAGACGAATCATCTGTTTCTACCTTTTCAGTGGGATCTTCCAATCGGTTTGGGTCTGCCAAGCGCTTCGCTTCTTTTGGGGCAGATTCGTCTGGCTTCTCGTACATGTCAGCGTCAACCACTGTGTATGTCCAATTTTTTCGGGTTTTTTTTTCGAGATCTACAATTTTACTGTTAGTTTTCTTCTTAATGTTGTAGTTTGGACCTACTTTTCTGAACAGTTGCCCATTTATCCGGGAATCGGTTCACAAAATCTTTGACAACTTCGTGATTCAATTCTTCAGGAAAATTTTCAAGTGGTTCCCAGCTAGTTGAACCATCAAGATCCCAGGTTACAAAAAGCACAATCTTCTTACCCTCGACTTTCGCTCGAGTAATTTCTCTGACCTGAATTACATTTACGTTCAATCATTTCTCTGATTTCTCATACCTGCCAGACTGGTTCGCCGTCTTCATCTTCCTCTTGCTCCCCCTCTCCTTGTACTTCTTCATCCATTTTTTTGTCTTCTCCAGTCGCCAAGCTTTTCTCTAGACCATCAGAAGCAGCCATCTAAAAAAATTTCAAATTCCGAAGAAAACAGTTGTTTCGGACTAGAATAATAGTAAGCGTTTTTTAGAGAGGAAAACTCATGTTTTCTTTGAAGGATAGGAATACTTCGCAAAAATAGGAAAAACAACTCGAGGGAGGAAACTAGAAAATTGAACATTTTCATGTCAGATGGATTTTCTCTTCACTGCCTTTACTTTGAAATTTCGAAACTTAATTTGTGACCGTGCTTTTGATAACTGTTTGAATGTCATGGATAACCCCAGTTTTAATCATAACTGCAAATTCAAAAAAAAACGAATTCCGAGGTAAAAACATTCAAAAAACACACCCAAACAATGGTGCTATAGCATGCTAA</canonical>
            <polymorphic>CCGTGTTAGAAGACCGCTCAAATCAATGGTCTAAGAAACAGAAATTAACAAAGAACATTTTTATTATCAAATGCACACGAACAAAAGGTTATACGACAGACGAATCATCTGTTTCTACCTTTTCAGTGGGATCTTCCAATCGGTTTGGGTCTGCCAAGCGCTTCGCTTCTTTTGGGGCAGATTCGTCTGGCTTCTCGTACATGTCAGCGTCAACCACTGTGTATGTCCAATTTTTTCGGGTTTTTTTTTCGAGATCTACAATTTTACTGTTAGTTTTCTTCTTAATGTTGTAGTTTGGACCTACTTTTCTGAACAGTTGCCCATTTATCCGGGAATCGGTTCACAAAATCTTTGACAACTTCGTGATTCAATTCTTCAGGAAAATTTTCAAGTGGTTCCCAGCTAGTTGAACCATCAAGATCCCAGGTTACAAAAAGCACAATCTTCTTACCCTCGACTTTCGCTCGAGTAATTTCTCTGACCTGAATTACATTTACGTYCAATCATTTCTCTGATTTCTCATACCTGCCAGACTGGTTCGCCGTCTTCATCTTCCTCTTGCTCCCCCTCTCCTTGTACTTCTTCATCCATTTTTTTGTCTTCTCCAGTCGCCAAGCTTTTCTCTAGACCATCAGAAGCAGCCATCTAAAAAAATTTCAAATTCCGAAGAAAACAGTTGTTTCGGACTAGAATAATAGTAAGCGTTTTTTAGAGAGGAAAACTCATGTTTTCTTTGAAGGATAGGAATACTTCGCAAAAATAGGAAAAACAACTCGAGGGAGGAAACTAGAAAATTGAACATTTTCATGTCAGATGGATTTTCTCTTCACTGCCTTTACTTTGAAATTTCGAAACTTAATTTGTGACCGTGCTTTTGATAACTGTTTGAATGTCATGGATAACCCCAGTTTTAATCATAACTGCAAATTCAAAAAAAAACGAATTCCGAGGTAAAAACATTCAAAAAACACACCCAAACAATGGTGCTATAGCATGCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAAGCACAATCTTCTTACC</pcr_primer_p1>
		<pcr_primer_p2>CAACTGTTTTCTTCGGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAAAAGCACAATCTTCTTACCCTCGACTTTCGCTCGAGTAATTTCTCTGACCTGAATTACATTTACGTTCAATCATTTCTCTGATTTCTCATACCTGCCAGACTGGTTCGCCGTCTTCATCTTCCTCTTGCTCCCCCTCTCCTTGTACTTCTTCATCCATTTTTTTGTCTTCTCCAGTCGCCAAGCTTTTCTCTAGACCATCAGAAGCAGCCATCTAAAAAAATTTCAAATTCCGAAGAAAACAGTTG</canonical_amplicon>
		<polymorphic_amplicon>CAAAAAGCACAATCTTCTTACCCTCGACTTTCGCTCGAGTAATTTCTCTGACCTGAATTACATTTACGTYCAATCATTTCTCTGATTTCTCATACCTGCCAGACTGGTTCGCCGTCTTCATCTTCCTCTTGCTCCCCCTCTCCTTGTACTTCTTCATCCATTTTTTTGTCTTCTCCAGTCGCCAAGCTTTTCTCTAGACCATCAGAAGCAGCCATCTAAAAAAATTTCAAATTCCGAAGAAAACAGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25265</snp_id>
        <super_contig>c001200895.Contig2</super_contig>
        <contig_pos>18096</contig_pos>
        <strand>+</strand>
        <context>AAAACTCATG[C/T]TTTCTTTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTTTCGGACTAGAATAATAGTAAGCGTTTTTTAGAGAGGAAAACTCATG</left_flank>
        <right_flank>TTTCTTTGAAGGATAGGAATACTTCGCAAAAATAGGAAAAACAACTCGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTTTCGGGTTTTTTTTTCGAGATCTACAATTTTACTGTTAGTTTTCTTCTTAATGTTGTAGTTTGGACCTACTTTTCTGAACAGTTGCCCATTTATCCGGGAATCGGTTCACAAAATCTTTGACAACTTCGTGATTCAATTCTTCAGGAAAATTTTCAAGTGGTTCCCAGCTAGTTGAACCATCAAGATCCCAGGTTACAAAAAGCACAATCTTCTTACCCTCGACTTTCGCTCGAGTAATTTCTCTGACCTGAATTACATTTACGTTCAATCATTTCTCTGATTTCTCATACCTGCCAGACTGGTTCGCCGTCTTCATCTTCCTCTTGCTCCCCCTCTCCTTGTACTTCTTCATCCATTTTTTTGTCTTCTCCAGTCGCCAAGCTTTTCTCTAGACCATCAGAAGCAGCCATCTAAAAAAATTTCAAATTCCGAAGAAAACAGTTGTTTCGGACTAGAATAATAGTAAGCGTTTTTTAGAGAGGAAAACTCATGTTTTCTTTGAAGGATAGGAATACTTCGCAAAAATAGGAAAAACAACTCGAGGGAGGAAACTAGAAAATTGAACATTTTCATGTCAGATGGATTTTCTCTTCACTGCCTTTACTTTGAAATTTCGAAACTTAATTTGTGACCGTGCTTTTGATAACTGTTTGAATGTCATGGATAACCCCAGTTTTAATCATAACTGCAAATTCAAAAAAAAACGAATTCCGAGGTAAAAACATTCAAAAAACACACCCAAACAATGGTGCTATAGCATGCTAAACAACGCGCGATGCCGTTATCGCGGAGTGTCGTTGGAAGCGCGACAATTTCACATGCTTCGTTTTAGAGTAAAAATCGTTTTGTCTTCCGAAGTCATCATTGTTTTGTCATATTATTGATTTAGATGCTTCGAGCAGGAGCCTCTCGATGTCTCGTGGTCGGAAATTCGACGTTGCGTTGCCTCTCAACTGGCAAGGACAATTTGCCTGTCACCAGATCTCACGACGC</canonical>
            <polymorphic>AATTTTTTCGGGTTTTTTTTTCGAGATCTACAATTTTACTGTTAGTTTTCTTCTTAATGTTGTAGTTTGGACCTACTTTTCTGAACAGTTGCCCATTTATCCGGGAATCGGTTCACAAAATCTTTGACAACTTCGTGATTCAATTCTTCAGGAAAATTTTCAAGTGGTTCCCAGCTAGTTGAACCATCAAGATCCCAGGTTACAAAAAGCACAATCTTCTTACCCTCGACTTTCGCTCGAGTAATTTCTCTGACCTGAATTACATTTACGTTCAATCATTTCTCTGATTTCTCATACCTGCCAGACTGGTTCGCCGTCTTCATCTTCCTCTTGCTCCCCCTCTCCTTGTACTTCTTCATCCATTTTTTTGTCTTCTCCAGTCGCCAAGCTTTTCTCTAGACCATCAGAAGCAGCCATCTAAAAAAATTTCAAATTCCGAAGAAAACAGTTGTTTCGGACTAGAATAATAGTAAGCGTTTTTTAGAGAGGAAAACTCATGYTTTCTTTGAAGGATAGGAATACTTCGCAAAAATAGGAAAAACAACTCGAGGGAGGAAACTAGAAAATTGAACATTTTCATGTCAGATGGATTTTCTCTTCACTGCCTTTACTTTGAAATTTCGAAACTTAATTTGTGACCGTGCTTTTGATAACTGTTTGAATGTCATGGATAACCCCAGTTTTAATCATAACTGCAAATTCAAAAAAAAACGAATTCCGAGGTAAAAACATTCAAAAAACACACCCAAACAATGGTGCTATAGCATGCTAAACAACGCGCGATGCCGTTATCGCGGAGTGTCGTTGGAAGCGCGACAATTTCACATGCTTCGTTTTAGAGTAAAAATCGTTTTGTCTTCCGAAGTCATCATTGTTTTGTCATATTATTGATTTAGATGCTTCGAGCAGGAGCCTCTCGATGTCTCGTGGTCGGAAATTCGACGTTGCGTTGCCTCTCAACTGGCAAGGACAATTTGCCTGTCACCAGATCTCACGACGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAGTTGTTTCGGACTAGAATA</pcr_primer_p1>
		<pcr_primer_p2>GTTATGATTAAAACTGGGGTTATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACAGTTGTTTCGGACTAGAATAATAGTAAGCGTTTTTTAGAGAGGAAAACTCATGTTTTCTTTGAAGGATAGGAATACTTCGCAAAAATAGGAAAAACAACTCGAGGGAGGAAACTAGAAAATTGAACATTTTCATGTCAGATGGATTTTCTCTTCACTGCCTTTACTTTGAAATTTCGAAACTTAATTTGTGACCGTGCTTTTGATAACTGTTTGAATGTCATGGATAACCCCAGTTTTAATCATAAC</canonical_amplicon>
		<polymorphic_amplicon>AACAGTTGTTTCGGACTAGAATAATAGTAAGCGTTTTTTAGAGAGGAAAACTCATGYTTTCTTTGAAGGATAGGAATACTTCGCAAAAATAGGAAAAACAACTCGAGGGAGGAAACTAGAAAATTGAACATTTTCATGTCAGATGGATTTTCTCTTCACTGCCTTTACTTTGAAATTTCGAAACTTAATTTGTGACCGTGCTTTTGATAACTGTTTGAATGTCATGGATAACCCCAGTTTTAATCATAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25266</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>9470</contig_pos>
        <strand>+</strand>
        <context>AAAAATTGAA[A/T]AACCTACTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAAAATAAAGGAAATTCTCTAAAATACTTTTGAAATCTCAAAAATTGAA</left_flank>
        <right_flank>AACCTACTCAATGGATGATGAAAAAAGCAAAAAGGACAAAGAAATGACGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATTCAAAATTCATTAATTTTCAGAAAAAGAAGTGGTCAATTCTACGGCTGTCCACTTACCGTAGTCCTCACACTTATCATTTCAATCAAATGCTTCTTCATCGTAGCTTGGATATACCGAGAGTACGGTAATTTCGATTTCCGGTGTACGGCATGGAATGGGCAGATTGCTGATAGCATGTACAGATCAAGACGGTGGACATTGTGAGTTGTTTTCTGTAGTTCTACCGTAATCCCTTAGAAATTGTAAAATATTAGATTTTTCTTTTACTGTAGTTTCAAACAATTTCCATAATGGTACTCTAGTCTACCGTAATCCGTTCAAAATTTTTAAAATTCTAAATCTGGCTCTCTAGACGGATTACTGTAGCTTTCTACAAGTCAGCTAGAACTAGACAAGAAATATGAAATGAGAAAATTATGGTACTGTAGACAATTCGAAAATTTTTAAAATAAAGGAAATTCTCTAAAATACTTTTGAAATCTCAAAAATTGAAGAACCTACTCAATGGATGATGAAAAAAGCAAAAAGGACAAAGAAATGACGGATTATGACTATGCTGGGGAACAGGATGCTTTACCGGACACACGAAAAAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTAGATCAACGTCCACTTCCACTGATTTACATCCTCCAAAAATTGATCCTCGTTTGGATTTCGGACCACTTCCACCGAATTTTCAACGCCGAATTGACAGTAATCATATTCCTGATATCAGTGATAATGATAATGGAGATG</canonical>
            <polymorphic>GAAATTCAAAATTCATTAATTTTCAGAAAAAGAAGTGGTCAATTCTACGGCTGTCCACTTACCGTAGTCCTCACACTTATCATTTCAATCAAATGCTTCTTCATCGTAGCTTGGATATACCGAGAGTACGGTAATTTCGATTTCCGGTGTACGGCATGGAATGGGCAGATTGCTGATAGCATGTACAGATCAAGACGGTGGACATTGTGAGTTGTTTTCTGTAGTTCTACCGTAATCCCTTAGAAATTGTAAAATATTAGATTTTTCTTTTACTGTAGTTTCAAACAATTTCCATAATGGTACTCTAGTCTACCGTAATCCGTTCAAAATTTTTAAAATTCTAAATCTGGCTCTCTAGACGGATTACTGTAGCTTTCTACAAGTCAGCTAGAACTAGACAAGAAATATGAAATGAGAAAATTATGGTACTGTAGACAATTCGAAAATTTTTAAAATAAAGGAAATTCTCTAAAATACTTTTGAAATCTCAAAAATTGAAWAACCTACTCAATGGATGATGAAAAAAGCAAAAAGGACAAAGAAATGACGGATTATGACTATGCTGGGGAACAGGATGCTTTACCGGACACACGAAAAAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTAGATCAACGTCCACTTCCACTGATTTACATCCTCCAAAAATTGATCCTCGTTTGGATTTCGGACCACTTCCACCGAATTTTCAACGCCGAATTGACAGTAATCATATTCCTGATATCAGTGATAATGATAATGGAGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTTCTACAAGTCAGCTAGAAC</pcr_primer_p1>
		<pcr_primer_p2>TCACTAATGAACCATTCTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GCTTTCTACAAGTCAGCTAGAACTAGACAAGAAATATGAAATGAGAAAATTATGGTACTGTAGACAATTCGAAAATTTTTAAAATAAAGGAAATTCTCTAAAATACTTTTGAAATCTCAAAAATTGAAGAACCTACTCAATGGATGATGAAAAAAGCAAAAAGGACAAAGAAATGACGGATTATGACTATGCTGGGGAACAGGATGCTTTACCGGACACACGAAAAAAGAGAATGGTTCATTAGTGA</canonical_amplicon>
		<polymorphic_amplicon>GCTTTCTACAAGTCAGCTAGAACTAGACAAGAAATATGAAATGAGAAAATTATGGTACTGTAGACAATTCGAAAATTTTTAAAATAAAGGAAATTCTCTAAAATACTTTTGAAATCTCAAAAATTGAAWAACCTACTCAATGGATGATGAAAAAAGCAAAAAGGACAAAGAAATGACGGATTATGACTATGCTGGGGAACAGGATGCTTTACCGGACACACGAAAAAAGAGAATGGTTCATTAGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25267</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>9627</contig_pos>
        <strand></strand>
        <context>cgaaaattcc[G/T]aaaattmawa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCC</left_flank>
        <right_flank>AAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAATGGGCAGATTGCTGATAGCATGTACAGATCAAGACGGTGGACATTGTGAGTTGTTTTCTGTAGTTCTACCGTAATCCCTTAGAAATTGTAAAATATTAGATTTTTCTTTTACTGTAGTTTCAAACAATTTCCATAATGGTACTCTAGTCTACCGTAATCCGTTCAAAATTTTTAAAATTCTAAATCTGGCTCTCTAGACGGATTACTGTAGCTTTCTACAAGTCAGCTAGAACTAGACAAGAAATATGAAATGAGAAAATTATGGTACTGTAGACAATTCGAAAATTTTTAAAATAAAGGAAATTCTCTAAAATACTTTTGAAATCTCAAAAATTGAAGAACCTACTCAATGGATGATGAAAAAAGCAAAAAGGACAAAGAAATGACGGATTATGACTATGCTGGGGAACAGGATGCTTTACCGGACACACGAAAAAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTAGATCAACGTCCACTTCCACTGATTTACATCCTCCAAAAATTGATCCTCGTTTGGATTTCGGACCACTTCCACCGAATTTTCAACGCCGAATTGACAGTAATCATATTCCTGATATCAGTGATAATGATAATGGAGATGATGATCTACCAATGACTACAATGGTTACTTTAACCAATACTCAAATCATTCCGTTATCTGGAGAAGAAAGTGGAGTTGTTAAGTGAGTCTTGGGAGGGTTTGGGGCACTTGTAGTTTATAGTCTTTGTAGTCAGTGTAGTTCTCTTTTCAGCATACT</canonical>
            <polymorphic>GGAATGGGCAGATTGCTGATAGCATGTACAGATCAAGACGGTGGACATTGTGAGTTGTTTTCTGTAGTTCTACCGTAATCCCTTAGAAATTGTAAAATATTAGATTTTTCTTTTACTGTAGTTTCAAACAATTTCCATAATGGTACTCTAGTCTACCGTAATCCGTTCAAAATTTTTAAAATTCTAAATCTGGCTCTCTAGACGGATTACTGTAGCTTTCTACAAGTCAGCTAGAACTAGACAAGAAATATGAAATGAGAAAATTATGGTACTGTAGACAATTCGAAAATTTTTAAAATAAAGGAAATTCTCTAAAATACTTTTGAAATCTCAAAAATTGAAGAACCTACTCAATGGATGATGAAAAAAGCAAAAAGGACAAAGAAATGACGGATTATGACTATGCTGGGGAACAGGATGCTTTACCGGACACACGAAAAAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCKAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTAGATCAACGTCCACTTCCACTGATTTACATCCTCCAAAAATTGATCCTCGTTTGGATTTCGGACCACTTCCACCGAATTTTCAACGCCGAATTGACAGTAATCATATTCCTGATATCAGTGATAATGATAATGGAGATGATGATCTACCAATGACTACAATGGTTACTTTAACCAATACTCAAATCATTCCGTTATCTGGAGAAGAAAGTGGAGTTGTTAAGTGAGTCTTGGGAGGGTTTGGGGCACTTGTAGTTTATAGTCTTTGTAGTCAGTGTAGTTCTCTTTTCAGCATACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>499 235 166 83 17</canonical_bands>
                <polymorphic_bands>516 235 166 83</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGAGAATGGTTCATTAGTGAGT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTTCTTCTTTTCTTTGTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAG</canonical_amplicon>
		<polymorphic_amplicon>AAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCKAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25268</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>9634</contig_pos>
        <strand></strand>
        <context>tcckaaaatt[A/C]awaaattckr</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATT</left_flank>
        <right_flank>AAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAGATTGCTGATAGCATGTACAGATCAAGACGGTGGACATTGTGAGTTGTTTTCTGTAGTTCTACCGTAATCCCTTAGAAATTGTAAAATATTAGATTTTTCTTTTACTGTAGTTTCAAACAATTTCCATAATGGTACTCTAGTCTACCGTAATCCGTTCAAAATTTTTAAAATTCTAAATCTGGCTCTCTAGACGGATTACTGTAGCTTTCTACAAGTCAGCTAGAACTAGACAAGAAATATGAAATGAGAAAATTATGGTACTGTAGACAATTCGAAAATTTTTAAAATAAAGGAAATTCTCTAAAATACTTTTGAAATCTCAAAAATTGAAGAACCTACTCAATGGATGATGAAAAAAGCAAAAAGGACAAAGAAATGACGGATTATGACTATGCTGGGGAACAGGATGCTTTACCGGACACACGAAAAAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTAGATCAACGTCCACTTCCACTGATTTACATCCTCCAAAAATTGATCCTCGTTTGGATTTCGGACCACTTCCACCGAATTTTCAACGCCGAATTGACAGTAATCATATTCCTGATATCAGTGATAATGATAATGGAGATGATGATCTACCAATGACTACAATGGTTACTTTAACCAATACTCAAATCATTCCGTTATCTGGAGAAGAAAGTGGAGTTGTTAAGTGAGTCTTGGGAGGGTTTGGGGCACTTGTAGTTTATAGTCTTTGTAGTCAGTGTAGTTCTCTTTTCAGCATACTTGGGAAN</canonical>
            <polymorphic>GCAGATTGCTGATAGCATGTACAGATCAAGACGGTGGACATTGTGAGTTGTTTTCTGTAGTTCTACCGTAATCCCTTAGAAATTGTAAAATATTAGATTTTTCTTTTACTGTAGTTTCAAACAATTTCCATAATGGTACTCTAGTCTACCGTAATCCGTTCAAAATTTTTAAAATTCTAAATCTGGCTCTCTAGACGGATTACTGTAGCTTTCTACAAGTCAGCTAGAACTAGACAAGAAATATGAAATGAGAAAATTATGGTACTGTAGACAATTCGAAAATTTTTAAAATAAAGGAAATTCTCTAAAATACTTTTGAAATCTCAAAAATTGAAGAACCTACTCAATGGATGATGAAAAAAGCAAAAAGGACAAAGAAATGACGGATTATGACTATGCTGGGGAACAGGATGCTTTACCGGACACACGAAAAAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTMAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTAGATCAACGTCCACTTCCACTGATTTACATCCTCCAAAAATTGATCCTCGTTTGGATTTCGGACCACTTCCACCGAATTTTCAACGCCGAATTGACAGTAATCATATTCCTGATATCAGTGATAATGATAATGGAGATGATGATCTACCAATGACTACAATGGTTACTTTAACCAATACTCAAATCATTCCGTTATCTGGAGAAGAAAGTGGAGTTGTTAAGTGAGTCTTGGGAGGGTTTGGGGCACTTGTAGTTTATAGTCTTTGTAGTCAGTGTAGTTCTCTTTTCAGCATACTTGGGAAN</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>302 212 169 117 85 49 34 16 9 7</canonical_bands>
                <polymorphic_bands>302 246 169 117 85 49 16 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGAGAATGGTTCATTAGTGAGT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTTCTTCTTTTCTTTGTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAG</canonical_amplicon>
		<polymorphic_amplicon>AAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTMAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25269</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>9636</contig_pos>
        <strand></strand>
        <context>ckaaaattma[A/T]aaattckraa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAA</left_flank>
        <right_flank>AAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATTGCTGATAGCATGTACAGATCAAGACGGTGGACATTGTGAGTTGTTTTCTGTAGTTCTACCGTAATCCCTTAGAAATTGTAAAATATTAGATTTTTCTTTTACTGTAGTTTCAAACAATTTCCATAATGGTACTCTAGTCTACCGTAATCCGTTCAAAATTTTTAAAATTCTAAATCTGGCTCTCTAGACGGATTACTGTAGCTTTCTACAAGTCAGCTAGAACTAGACAAGAAATATGAAATGAGAAAATTATGGTACTGTAGACAATTCGAAAATTTTTAAAATAAAGGAAATTCTCTAAAATACTTTTGAAATCTCAAAAATTGAAGAACCTACTCAATGGATGATGAAAAAAGCAAAAAGGACAAAGAAATGACGGATTATGACTATGCTGGGGAACAGGATGCTTTACCGGACACACGAAAAAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTAGATCAACGTCCACTTCCACTGATTTACATCCTCCAAAAATTGATCCTCGTTTGGATTTCGGACCACTTCCACCGAATTTTCAACGCCGAATTGACAGTAATCATATTCCTGATATCAGTGATAATGATAATGGAGATGATGATCTACCAATGACTACAATGGTTACTTTAACCAATACTCAAATCATTCCGTTATCTGGAGAAGAAAGTGGAGTTGTTAAGTGAGTCTTGGGAGGGTTTGGGGCACTTGTAGTTTATAGTCTTTGTAGTCAGTGTAGTTCTCTTTTCAGCATACTTGGGAANNN</canonical>
            <polymorphic>AGATTGCTGATAGCATGTACAGATCAAGACGGTGGACATTGTGAGTTGTTTTCTGTAGTTCTACCGTAATCCCTTAGAAATTGTAAAATATTAGATTTTTCTTTTACTGTAGTTTCAAACAATTTCCATAATGGTACTCTAGTCTACCGTAATCCGTTCAAAATTTTTAAAATTCTAAATCTGGCTCTCTAGACGGATTACTGTAGCTTTCTACAAGTCAGCTAGAACTAGACAAGAAATATGAAATGAGAAAATTATGGTACTGTAGACAATTCGAAAATTTTTAAAATAAAGGAAATTCTCTAAAATACTTTTGAAATCTCAAAAATTGAAGAACCTACTCAATGGATGATGAAAAAAGCAAAAAGGACAAAGAAATGACGGATTATGACTATGCTGGGGAACAGGATGCTTTACCGGACACACGAAAAAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAWAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTAGATCAACGTCCACTTCCACTGATTTACATCCTCCAAAAATTGATCCTCGTTTGGATTTCGGACCACTTCCACCGAATTTTCAACGCCGAATTGACAGTAATCATATTCCTGATATCAGTGATAATGATAATGGAGATGATGATCTACCAATGACTACAATGGTTACTTTAACCAATACTCAAATCATTCCGTTATCTGGAGAAGAAAGTGGAGTTGTTAAGTGAGTCTTGGGAGGGTTTGGGGCACTTGTAGTTTATAGTCTTTGTAGTCAGTGTAGTTCTCTTTTCAGCATACTTGGGAANNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAGAATGGTTCATTAGTGAGT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTTCTTCTTTTCTTTGTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAG</canonical_amplicon>
		<polymorphic_amplicon>AAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAWAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25270</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>9643</contig_pos>
        <strand></strand>
        <context>tmawaaattc[T/G]raaattctaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTC</left_flank>
        <right_flank>GAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTA</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATAGCATGTACAGATCAAGACGGTGGACATTGTGAGTTGTTTTCTGTAGTTCTACCGTAATCCCTTAGAAATTGTAAAATATTAGATTTTTCTTTTACTGTAGTTTCAAACAATTTCCATAATGGTACTCTAGTCTACCGTAATCCGTTCAAAATTTTTAAAATTCTAAATCTGGCTCTCTAGACGGATTACTGTAGCTTTCTACAAGTCAGCTAGAACTAGACAAGAAATATGAAATGAGAAAATTATGGTACTGTAGACAATTCGAAAATTTTTAAAATAAAGGAAATTCTCTAAAATACTTTTGAAATCTCAAAAATTGAAGAACCTACTCAATGGATGATGAAAAAAGCAAAAAGGACAAAGAAATGACGGATTATGACTATGCTGGGGAACAGGATGCTTTACCGGACACACGAAAAAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTAGATCAACGTCCACTTCCACTGATTTACATCCTCCAAAAATTGATCCTCGTTTGGATTTCGGACCACTTCCACCGAATTTTCAACGCCGAATTGACAGTAATCATATTCCTGATATCAGTGATAATGATAATGGAGATGATGATCTACCAATGACTACAATGGTTACTTTAACCAATACTCAAATCATTCCGTTATCTGGAGAAGAAAGTGGAGTTGTTAAGTGAGTCTTGGGAGGGTTTGGGGCACTTGTAGTTTATAGTCTTTGTAGTCAGTGTAGTTCTCTTTTCAGCATACTTGGGAANNNNNNNNNN</canonical>
            <polymorphic>TGATAGCATGTACAGATCAAGACGGTGGACATTGTGAGTTGTTTTCTGTAGTTCTACCGTAATCCCTTAGAAATTGTAAAATATTAGATTTTTCTTTTACTGTAGTTTCAAACAATTTCCATAATGGTACTCTAGTCTACCGTAATCCGTTCAAAATTTTTAAAATTCTAAATCTGGCTCTCTAGACGGATTACTGTAGCTTTCTACAAGTCAGCTAGAACTAGACAAGAAATATGAAATGAGAAAATTATGGTACTGTAGACAATTCGAAAATTTTTAAAATAAAGGAAATTCTCTAAAATACTTTTGAAATCTCAAAAATTGAAGAACCTACTCAATGGATGATGAAAAAAGCAAAAAGGACAAAGAAATGACGGATTATGACTATGCTGGGGAACAGGATGCTTTACCGGACACACGAAAAAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCKGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTAGATCAACGTCCACTTCCACTGATTTACATCCTCCAAAAATTGATCCTCGTTTGGATTTCGGACCACTTCCACCGAATTTTCAACGCCGAATTGACAGTAATCATATTCCTGATATCAGTGATAATGATAATGGAGATGATGATCTACCAATGACTACAATGGTTACTTTAACCAATACTCAAATCATTCCGTTATCTGGAGAAGAAAGTGGAGTTGTTAAGTGAGTCTTGGGAGGGTTTGGGGCACTTGTAGTTTATAGTCTTTGTAGTCAGTGTAGTTCTCTTTTCAGCATACTTGGGAANNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAGAATGGTTCATTAGTGAGT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTTCTTCTTTTCTTTGTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAG</canonical_amplicon>
		<polymorphic_amplicon>AAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCKGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25271</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>9644</contig_pos>
        <strand></strand>
        <context>mawaaattck[G/A]aaattctaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCT</left_flank>
        <right_flank>AAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAA</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATAGCATGTACAGATCAAGACGGTGGACATTGTGAGTTGTTTTCTGTAGTTCTACCGTAATCCCTTAGAAATTGTAAAATATTAGATTTTTCTTTTACTGTAGTTTCAAACAATTTCCATAATGGTACTCTAGTCTACCGTAATCCGTTCAAAATTTTTAAAATTCTAAATCTGGCTCTCTAGACGGATTACTGTAGCTTTCTACAAGTCAGCTAGAACTAGACAAGAAATATGAAATGAGAAAATTATGGTACTGTAGACAATTCGAAAATTTTTAAAATAAAGGAAATTCTCTAAAATACTTTTGAAATCTCAAAAATTGAAGAACCTACTCAATGGATGATGAAAAAAGCAAAAAGGACAAAGAAATGACGGATTATGACTATGCTGGGGAACAGGATGCTTTACCGGACACACGAAAAAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTAGATCAACGTCCACTTCCACTGATTTACATCCTCCAAAAATTGATCCTCGTTTGGATTTCGGACCACTTCCACCGAATTTTCAACGCCGAATTGACAGTAATCATATTCCTGATATCAGTGATAATGATAATGGAGATGATGATCTACCAATGACTACAATGGTTACTTTAACCAATACTCAAATCATTCCGTTATCTGGAGAAGAAAGTGGAGTTGTTAAGTGAGTCTTGGGAGGGTTTGGGGCACTTGTAGTTTATAGTCTTTGTAGTCAGTGTAGTTCTCTTTTCAGCATACTTGGGAANNNNNNNNNNN</canonical>
            <polymorphic>GATAGCATGTACAGATCAAGACGGTGGACATTGTGAGTTGTTTTCTGTAGTTCTACCGTAATCCCTTAGAAATTGTAAAATATTAGATTTTTCTTTTACTGTAGTTTCAAACAATTTCCATAATGGTACTCTAGTCTACCGTAATCCGTTCAAAATTTTTAAAATTCTAAATCTGGCTCTCTAGACGGATTACTGTAGCTTTCTACAAGTCAGCTAGAACTAGACAAGAAATATGAAATGAGAAAATTATGGTACTGTAGACAATTCGAAAATTTTTAAAATAAAGGAAATTCTCTAAAATACTTTTGAAATCTCAAAAATTGAAGAACCTACTCAATGGATGATGAAAAAAGCAAAAAGGACAAAGAAATGACGGATTATGACTATGCTGGGGAACAGGATGCTTTACCGGACACACGAAAAAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTRAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTAGATCAACGTCCACTTCCACTGATTTACATCCTCCAAAAATTGATCCTCGTTTGGATTTCGGACCACTTCCACCGAATTTTCAACGCCGAATTGACAGTAATCATATTCCTGATATCAGTGATAATGATAATGGAGATGATGATCTACCAATGACTACAATGGTTACTTTAACCAATACTCAAATCATTCCGTTATCTGGAGAAGAAAGTGGAGTTGTTAAGTGAGTCTTGGGAGGGTTTGGGGCACTTGTAGTTTATAGTCTTTGTAGTCAGTGTAGTTCTCTTTTCAGCATACTTGGGAANNNNNNNNNNN</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>482 252 166 83 17</canonical_bands>
                <polymorphic_bands>482 252 166 100</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGAGAATGGTTCATTAGTGAGT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTTCTTCTTTTCTTTGTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAG</canonical_amplicon>
		<polymorphic_amplicon>AAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTRAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25272</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>9685</contig_pos>
        <strand></strand>
        <context>ttaaattttc[T/A]aaattttaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTC</left_flank>
        <right_flank>AAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTGTAGTTCTACCGTAATCCCTTAGAAATTGTAAAATATTAGATTTTTCTTTTACTGTAGTTTCAAACAATTTCCATAATGGTACTCTAGTCTACCGTAATCCGTTCAAAATTTTTAAAATTCTAAATCTGGCTCTCTAGACGGATTACTGTAGCTTTCTACAAGTCAGCTAGAACTAGACAAGAAATATGAAATGAGAAAATTATGGTACTGTAGACAATTCGAAAATTTTTAAAATAAAGGAAATTCTCTAAAATACTTTTGAAATCTCAAAAATTGAAGAACCTACTCAATGGATGATGAAAAAAGCAAAAAGGACAAAGAAATGACGGATTATGACTATGCTGGGGAACAGGATGCTTTACCGGACACACGAAAAAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTAGATCAACGTCCACTTCCACTGATTTACATCCTCCAAAAATTGATCCTCGTTTGGATTTCGGACCACTTCCACCGAATTTTCAACGCCGAATTGACAGTAATCATATTCCTGATATCAGTGATAATGATAATGGAGATGATGATCTACCAATGACTACAATGGTTACTTTAACCAATACTCAAATCATTCCGTTATCTGGAGAAGAAAGTGGAGTTGTTAAGTGAGTCTTGGGAGGGTTTGGGGCACTTGTAGTTTATAGTCTTTGTAGTCAGTGTAGTTCTCTTTTCAGCATACTTGGGAANNNNNNNNNNNGGGCCTTCGCGGGCCCTGCCATAACTTTTTTCAGAATCAAT</canonical>
            <polymorphic>TTTCTGTAGTTCTACCGTAATCCCTTAGAAATTGTAAAATATTAGATTTTTCTTTTACTGTAGTTTCAAACAATTTCCATAATGGTACTCTAGTCTACCGTAATCCGTTCAAAATTTTTAAAATTCTAAATCTGGCTCTCTAGACGGATTACTGTAGCTTTCTACAAGTCAGCTAGAACTAGACAAGAAATATGAAATGAGAAAATTATGGTACTGTAGACAATTCGAAAATTTTTAAAATAAAGGAAATTCTCTAAAATACTTTTGAAATCTCAAAAATTGAAGAACCTACTCAATGGATGATGAAAAAAGCAAAAAGGACAAAGAAATGACGGATTATGACTATGCTGGGGAACAGGATGCTTTACCGGACACACGAAAAAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCWAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTAGATCAACGTCCACTTCCACTGATTTACATCCTCCAAAAATTGATCCTCGTTTGGATTTCGGACCACTTCCACCGAATTTTCAACGCCGAATTGACAGTAATCATATTCCTGATATCAGTGATAATGATAATGGAGATGATGATCTACCAATGACTACAATGGTTACTTTAACCAATACTCAAATCATTCCGTTATCTGGAGAAGAAAGTGGAGTTGTTAAGTGAGTCTTGGGAGGGTTTGGGGCACTTGTAGTTTATAGTCTTTGTAGTCAGTGTAGTTCTCTTTTCAGCATACTTGGGAANNNNNNNNNNNGGGCCTTCGCGGGCCCTGCCATAACTTTTTTCAGAATCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAGAATGGTTCATTAGTGAGT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTTCTTCTTTTCTTTGTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAG</canonical_amplicon>
		<polymorphic_amplicon>AAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCWAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25273</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>9757</contig_pos>
        <strand></strand>
        <context>aactcccgaa[A/G]atgatgaCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAA</left_flank>
        <right_flank>ATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCCATAATGGTACTCTAGTCTACCGTAATCCGTTCAAAATTTTTAAAATTCTAAATCTGGCTCTCTAGACGGATTACTGTAGCTTTCTACAAGTCAGCTAGAACTAGACAAGAAATATGAAATGAGAAAATTATGGTACTGTAGACAATTCGAAAATTTTTAAAATAAAGGAAATTCTCTAAAATACTTTTGAAATCTCAAAAATTGAAGAACCTACTCAATGGATGATGAAAAAAGCAAAAAGGACAAAGAAATGACGGATTATGACTATGCTGGGGAACAGGATGCTTTACCGGACACACGAAAAAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTAGATCAACGTCCACTTCCACTGATTTACATCCTCCAAAAATTGATCCTCGTTTGGATTTCGGACCACTTCCACCGAATTTTCAACGCCGAATTGACAGTAATCATATTCCTGATATCAGTGATAATGATAATGGAGATGATGATCTACCAATGACTACAATGGTTACTTTAACCAATACTCAAATCATTCCGTTATCTGGAGAAGAAAGTGGAGTTGTTAAGTGAGTCTTGGGAGGGTTTGGGGCACTTGTAGTTTATAGTCTTTGTAGTCAGTGTAGTTCTCTTTTCAGCATACTTGGGAANNNNNNNNNNNGGGCCTTCGCGGGCCCTGCCATAACTTTTTTCAGAATCAATGTTTTCGAACCAACTCAATTAGATATGATAAAGATTCACGAGTACTACAAAACGGTATAATTTGGAATACTG</canonical>
            <polymorphic>ATTTCCATAATGGTACTCTAGTCTACCGTAATCCGTTCAAAATTTTTAAAATTCTAAATCTGGCTCTCTAGACGGATTACTGTAGCTTTCTACAAGTCAGCTAGAACTAGACAAGAAATATGAAATGAGAAAATTATGGTACTGTAGACAATTCGAAAATTTTTAAAATAAAGGAAATTCTCTAAAATACTTTTGAAATCTCAAAAATTGAAGAACCTACTCAATGGATGATGAAAAAAGCAAAAAGGACAAAGAAATGACGGATTATGACTATGCTGGGGAACAGGATGCTTTACCGGACACACGAAAAAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAARATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTAGATCAACGTCCACTTCCACTGATTTACATCCTCCAAAAATTGATCCTCGTTTGGATTTCGGACCACTTCCACCGAATTTTCAACGCCGAATTGACAGTAATCATATTCCTGATATCAGTGATAATGATAATGGAGATGATGATCTACCAATGACTACAATGGTTACTTTAACCAATACTCAAATCATTCCGTTATCTGGAGAAGAAAGTGGAGTTGTTAAGTGAGTCTTGGGAGGGTTTGGGGCACTTGTAGTTTATAGTCTTTGTAGTCAGTGTAGTTCTCTTTTCAGCATACTTGGGAANNNNNNNNNNNGGGCCTTCGCGGGCCCTGCCATAACTTTTTTCAGAATCAATGTTTTCGAACCAACTCAATTAGATATGATAAAGATTCACGAGTACTACAAAACGGTATAATTTGGAATACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAGAATGGTTCATTAGTGAGT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTTCTTCTTTTCTTTGTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAG</canonical_amplicon>
		<polymorphic_amplicon>AAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAARATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25274</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>9918</contig_pos>
        <strand>+</strand>
        <context>ATTTTCAACG[A/C]CGAATTGACA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAATTGATCCTCGTTTGGATTTCGGACCACTTCCACCGAATTTTCAACG</left_flank>
        <right_flank>CGAATTGACAGTAATCATATTCCTGATATCAGTGATAATGATAATGGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAAAATAAAGGAAATTCTCTAAAATACTTTTGAAATCTCAAAAATTGAAGAACCTACTCAATGGATGATGAAAAAAGCAAAAAGGACAAAGAAATGACGGATTATGACTATGCTGGGGAACAGGATGCTTTACCGGACACACGAAAAAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTAGATCAACGTCCACTTCCACTGATTTACATCCTCCAAAAATTGATCCTCGTTTGGATTTCGGACCACTTCCACCGAATTTTCAACGCCGAATTGACAGTAATCATATTCCTGATATCAGTGATAATGATAATGGAGATGATGATCTACCAATGACTACAATGGTTACTTTAACCAATACTCAAATCATTCCGTTATCTGGAGAAGAAAGTGGAGTTGTTAAGTGAGTCTTGGGAGGGTTTGGGGCACTTGTAGTTTATAGTCTTTGTAGTCAGTGTAGTTCTCTTTTCAGCATACTTGGGAANNNNNNNNNNNGGGCCTTCGCGGGCCCTGCCATAACTTTTTTCAGAATCAATGTTTTCGAACCAACTCAATTAGATATGATAAAGATTCACGAGTACTACAAAACGGTATAATTTGGAATACTGTATCATATCTGATTTAGTTGGTTCGAAAATATTGATTCTGAAAGAAATTATGGCAGGGTCCGCCAAGGCCCAGCAAAGGCCCAGATTACAAGTATGCATTTCAGCCAATTCCAAAGAAAGCATTTTTCAGAATGAAAACCATTCGAAATCGTGTCGAAAAA</canonical>
            <polymorphic>TTTAAAATAAAGGAAATTCTCTAAAATACTTTTGAAATCTCAAAAATTGAAGAACCTACTCAATGGATGATGAAAAAAGCAAAAAGGACAAAGAAATGACGGATTATGACTATGCTGGGGAACAGGATGCTTTACCGGACACACGAAAAAAGAGAATGGTTCATTAGTGAGTCCCTAAAGTTCTAAAATTCATGAATTCGAAAATTCCGAAAATTAAAAAATTCTGAAATTCTAAAGTTTCAAGATTTTAAAATTCTTAAATTTTCTAAATTTTAAATTTTAAAAAATCAATTTTCAGCGAAAAATCTGACCCCCGAAAATTCTCAAAAACTCCCGAAAATGATGACGATGATGATAACGCGAAAACCGATGTGATCAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTAGATCAACGTCCACTTCCACTGATTTACATCCTCCAAAAATTGATCCTCGTTTGGATTTCGGACCACTTCCACCGAATTTTCAACGMCGAATTGACAGTAATCATATTCCTGATATCAGTGATAATGATAATGGAGATGATGATCTACCAATGACTACAATGGTTACTTTAACCAATACTCAAATCATTCCGTTATCTGGAGAAGAAAGTGGAGTTGTTAAGTGAGTCTTGGGAGGGTTTGGGGCACTTGTAGTTTATAGTCTTTGTAGTCAGTGTAGTTCTCTTTTCAGCATACTTGGGAANNNNNNNNNNNGGGCCTTCGCGGGCCCTGCCATAACTTTTTTCAGAATCAATGTTTTCGAACCAACTCAATTAGATATGATAAAGATTCACGAGTACTACAAAACGGTATAATTTGGAATACTGTATCATATCTGATTTAGTTGGTTCGAAAATATTGATTCTGAAAGAAATTATGGCAGGGTCCGCCAAGGCCCAGCAAAGGCCCAGATTACAAGTATGCATTTCAGCCAATTCCAAAGAAAGCATTTTTCAGAATGAAAACCATTCGAAATCGTGTCGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACAAAGAAAAGAAGAAAAAGA</pcr_primer_p1>
		<pcr_primer_p2>TCCACTTTCTTCTCCAGATAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTAGATCAACGTCCACTTCCACTGATTTACATCCTCCAAAAATTGATCCTCGTTTGGATTTCGGACCACTTCCACCGAATTTTCAACGCCGAATTGACAGTAATCATATTCCTGATATCAGTGATAATGATAATGGAGATGATGATCTACCAATGACTACAATGGTTACTTTAACCAATACTCAAATCATTCCGTTATCTGGAGAAGAAAGTGGA</canonical_amplicon>
		<polymorphic_amplicon>CAACAAAGAAAAGAAGAAAAAGAAGCCGTTATACGGTAGATCAACGTCCACTTCCACTGATTTACATCCTCCAAAAATTGATCCTCGTTTGGATTTCGGACCACTTCCACCGAATTTTCAACGMCGAATTGACAGTAATCATATTCCTGATATCAGTGATAATGATAATGGAGATGATGATCTACCAATGACTACAATGGTTACTTTAACCAATACTCAAATCATTCCGTTATCTGGAGAAGAAAGTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25275</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>12199</contig_pos>
        <strand>+</strand>
        <context>AACAGAAAAT[A/G]CCAATTCCGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAAT</left_flank>
        <right_flank>CCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTGACCAGGAGGCGCGGAAAGTGACATCAAGGAAGCTTGGCTATTTTGAGCTCAATGATCACGATTCCTATGCATGATATCAAAAATCTGTAAACTACAAAAATGTAGGTGATATTATGATAAACATTTTATCAGTTGACAAATTGTTTGATTTCTTCTGAAGGAACAGAGATAATTGAGCTCAGAGTTGACTGTTTGTATAGGTATTCGTGGTATTTTAAGGCTAACTCTCAAAATTCAGACTAATTTTTTTCAAACTTCATTAATGAAAACCATTTTTATTGCTATGCAATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACC</canonical>
            <polymorphic>AAAGTGACCAGGAGGCGCGGAAAGTGACATCAAGGAAGCTTGGCTATTTTGAGCTCAATGATCACGATTCCTATGCATGATATCAAAAATCTGTAAACTACAAAAATGTAGGTGATATTATGATAAACATTTTATCAGTTGACAAATTGTTTGATTTCTTCTGAAGGAACAGAGATAATTGAGCTCAGAGTTGACTGTTTGTATAGGTATTCGTGGTATTTTAAGGCTAACTCTCAAAATTCAGACTAATTTTTTTCAAACTTCATTAATGAAAACCATTTTTATTGCTATGCAATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATRCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTAGTTCCAGTTTTTGTGGTA</pcr_primer_p1>
		<pcr_primer_p2>TTCCTTCATGCTATCAATTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATRCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25276</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>12470</contig_pos>
        <strand>+</strand>
        <context>ACATCCGTTT[C/T]ATCAGCYTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTT</left_flank>
        <right_flank>ATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACCATTTTTATTGCTATGCAATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAGTTTCAAGATATTTTTTACTGAAAATCCTTGAAGCTGTCATGAACCATTATGTCTTTGAA</canonical>
            <polymorphic>AAAACCATTTTTATTGCTATGCAATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTYATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAGTTTCAAGATATTTTTTACTGAAAATCCTTGAAGCTGTCATGAACCATTATGTCTTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>499 456 45</canonical_bands>
                <polymorphic_bands>544 456</polymorphic_bands>
            </assay>
            <assay>
                <site>GATNNNNATC</site>
                <isoschizomers>
                    <enzyme>BsaBI</enzyme>
                    <enzyme>Bse8I</enzyme>
                    <enzyme>BseJI</enzyme>
                    <enzyme>BsiBI</enzyme>
                    <enzyme>BsrBRI</enzyme>
                    <enzyme>MamI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCATATTTTATGTCACTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>GAAACATTTGCAAGGTAATTAGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTYATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25277</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>12477</contig_pos>
        <strand>+</strand>
        <context>TTTYATCAGC[C/T]TCTTCYCACA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGC</left_flank>
        <right_flank>TCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTATTGCTATGCAATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAGTTTCAAGATATTTTTTACTGAAAATCCTTGAAGCTGTCATGAACCATTATGTCTTTGAATTTGTAG</canonical>
            <polymorphic>TTTTTATTGCTATGCAATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCYTCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAGTTTCAAGATATTTTTTACTGAAAATCCTTGAAGCTGTCATGAACCATTATGTCTTTGAATTTGTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATNNNNATC</site>
                <isoschizomers>
                    <enzyme>BsaBI</enzyme>
                    <enzyme>Bse8I</enzyme>
                    <enzyme>BseJI</enzyme>
                    <enzyme>BsiBI</enzyme>
                    <enzyme>BsrBRI</enzyme>
                    <enzyme>MamI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCATATTTTATGTCACTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>GAAACATTTGCAAGGTAATTAGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCYTCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25278</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>12483</contig_pos>
        <strand>+</strand>
        <context>CAGCYTCTTC[C/T]CACATTTTYA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTC</left_flank>
        <right_flank>CACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCTATGCAATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAGTTTCAAGATATTTTTTACTGAAAATCCTTGAAGCTGTCATGAACCATTATGTCTTTGAATTTGTAGCCTATT</canonical>
            <polymorphic>TTGCTATGCAATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCYCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAGTTTCAAGATATTTTTTACTGAAAATCCTTGAAGCTGTCATGAACCATTATGTCTTTGAATTTGTAGCCTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCATATTTTATGTCACTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>GAAACATTTGCAAGGTAATTAGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCYCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25279</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>12492</contig_pos>
        <strand>+</strand>
        <context>CYCACATTTT[C/T]ATTGCTGKAT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTT</left_flank>
        <right_flank>ATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAGTTTCAAGATATTTTTTACTGAAAATCCTTGAAGCTGTCATGAACCATTATGTCTTTGAATTTGTAGCCTATTCCACTAGCT</canonical>
            <polymorphic>AATAAGAAAACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTYATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAGTTTCAAGATATTTTTTACTGAAAATCCTTGAAGCTGTCATGAACCATTATGTCTTTGAATTTGTAGCCTATTCCACTAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>498 213 145 102 42</canonical_bands>
                <polymorphic_bands>643 213 102 42</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>209 201 149 112 76 65 57 26 24 19 17 16 13 12 4</canonical_bands>
                <polymorphic_bands>214 209 201 112 76 57 26 24 19 17 16 13 12 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCATATTTTATGTCACTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>GAAACATTTGCAAGGTAATTAGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTYATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25280</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>12500</contig_pos>
        <strand>+</strand>
        <context>TTYATTGCTG[G/T]ATCATAAGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTG</left_flank>
        <right_flank>ATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAGTTTCAAGATATTTTTTACTGAAAATCCTTGAAGCTGTCATGAACCATTATGTCTTTGAATTTGTAGCCTATTCCACTAGCTGGCCATGT</canonical>
            <polymorphic>AACAAGTAAATAGAAACCAGGAAAAGTTCAATATCTAGCTGTTGGAGCTCCAGTAGTCGTTGCAGCCTTCGTTGTTCCTGTATTGGTTTTAGTTCCAGTTTTTGTGGTATTCCCAGTCGCCGTGGTCCCTCCAGTCGTTGTTCCAGTCATTGACTGTCCTGGTGTAGATGCTTTCTTCTTCTTACAGTAACAGAAAATGCCAATTCCGATGGCAAGAATGGCAATGACTCCAATAACTCCTCCAATGATAAATGGAATCATTTTATTGGAATCATTTGCGGTAGTTGAGTAGATGGACGCGGTAGTTGGGTAGAATTGATAGCATGAAGGAATTTCTGGAACAATTACAATAGTTTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGKATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTCGAAAAGTCTCACAAATATTTTCGTCCATCAGTTCTGAAATTAATTGGTTTTTTCTTCAATTCCTCAAAACCCTACCTTGGATTAATTCCTTTATTCAATTCACCGAAATCGATTTTTCTCTCGTTTCTCCTATTGAGCATCACGATTGAAGTTTTGGTTATTCTTCGTGGCAGTGACTTTAGTGTTTTTTGTCTTTTTTGTCTTTTTCTTCAACCTTTTATAGCAAACGCATCTAGGGTACTAAACCAGTGCTGTGCTGGGCAAAGGGTACCAGACCGGTCAGTGGTCAATAGGTTAAATTAGTGCCAAAAAAAAGTTTCAAGATATTTTTTACTGAAAATCCTTGAAGCTGTCATGAACCATTATGTCTTTGAATTTGTAGCCTATTCCACTAGCTGGCCATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>501 365 69 65</canonical_bands>
                <polymorphic_bands>570 365 65</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>415 340 97 86 62</canonical_bands>
                <polymorphic_bands>415 340 183 62</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>504 365 69 62</canonical_bands>
                <polymorphic_bands>573 365 62</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCATATTTTATGTCACTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>GAAACATTTGCAAGGTAATTAGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGCATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTCATATTTTATGTCACTGTTCCATCTCACCATTCTTCGCCTCTATGCAATATTTACTGAATGCCTCCTCAGCAGCAGGTTTACAATCTCCGACGATTTTATGGACATCCGTTTGATCAGCATCTTCGCACATTTTAATTGCTGKATCATAAGGAACAGGATCACATTTGTCCGCACGAATCGGGCACTCATTCTTGAACCAATTGTATCTAAAAATACTAATTACCTTGCAAATGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25281</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>38320</contig_pos>
        <strand>+</strand>
        <context>ACCGTCTCGG[A/T]GRCGATTCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGAGAAAAGTTGCCTTTTCACCACAAAAGAACTGCTTTTGACCGTCTCGG</left_flank>
        <right_flank>GACGATTCGACGATTTAGTCTGTATTCCGGGAAAATGAGGATAAATGGAA</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTTTATGAAATTCACCAGTTTCAGAATAAATAAGACTTTCATGAGACTATCTTAACTGTGACTGAATCTGACTTGGTCAAAATAAAATAGTAACATCTGGCTAAACAGAGGCGGAATAAAGATATCTACATATATACATCCACAACAACAAGAAAAAAGGCATTTGGATGGTAATGAAAAAAGAGAAAGATGAAGAAAACAAGTTACTAACTAACTAACCACAAATGGCTATAGACGGTTTAAAGTAGCAAATTTGCAGAAGGAAATTTCTGGGATTCTACCGGGACTAGACAAATAAAATATAGACTTTCAGAATTCCCATTTTCAGGCTTTCGAATGATACCCAAGTCGGGTCGTAACTAAGATATTTATCTGATTTATACAGGCTTCAAAACTTGACACATAAAATTTCGAAAAAAAAACATTTTTTGAAGTGCCTAAAACACTCGAGAAAAGTTGCCTTTTCACCACAAAAGAACTGCTTTTGACCGTCTCGGTGACGATTCGACGATTTAGTCTGTATTCCGGGAAAATGAGGATAAATGGAATGAAGAGGGCGTATATGCAAATCGCAAAAGATGCTATCCGCGCGCCCCCAAAGGATTATATGAGGTGGAAACTTACAAACCTCCAAGATTCGTTCCCTACTTGCTTTATGAGGTGTGGAAAGGTGAATATCCGGGTATATCCACATCCTAAAAAAAGAAAAAAAGATTTGACCCAGGCAGGGATCGAACCTGCAATCTTCTGATTAGAAGTCAGACGCCTTATCCATTAGGCCACAAGGCCACGAGAGACTAGAGGTGGTGAGGGCGTACAAGTGTGTGTGTGTGTGCACTAGGCGGTGGCCGGCGCAGCCGACTGGCAGGAGATGAGTCATGTGGTGTGTGTTATTTTTTGTGGATTTTTTTTCAAAGAAGAGAAAAAAGAAAAAGGGAGAACCAAGAAGGAAGAAGATGAAACCAATTGTAAATAGTCACTGAATAGTGAAAGCTTTT</canonical>
            <polymorphic>TGTTTTATGAAATTCACCAGTTTCAGAATAAATAAGACTTTCATGAGACTATCTTAACTGTGACTGAATCTGACTTGGTCAAAATAAAATAGTAACATCTGGCTAAACAGAGGCGGAATAAAGATATCTACATATATACATCCACAACAACAAGAAAAAAGGCATTTGGATGGTAATGAAAAAAGAGAAAGATGAAGAAAACAAGTTACTAACTAACTAACCACAAATGGCTATAGACGGTTTAAAGTAGCAAATTTGCAGAAGGAAATTTCTGGGATTCTACCGGGACTAGACAAATAAAATATAGACTTTCAGAATTCCCATTTTCAGGCTTTCGAATGATACCCAAGTCGGGTCGTAACTAAGATATTTATCTGATTTATACAGGCTTCAAAACTTGACACATAAAATTTCGAAAAAAAAACATTTTTTGAAGTGCCTAAAACACTCGAGAAAAGTTGCCTTTTCACCACAAAAGAACTGCTTTTGACCGTCTCGGWGACGATTCGACGATTTAGTCTGTATTCCGGGAAAATGAGGATAAATGGAATGAAGAGGGCGTATATGCAAATCGCAAAAGATGCTATCCGCGCGCCCCCAAAGGATTATATGAGGTGGAAACTTACAAACCTCCAAGATTCGTTCCCTACTTGCTTTATGAGGTGTGGAAAGGTGAATATCCGGGTATATCCACATCCTAAAAAAAGAAAAAAAGATTTGACCCAGGCAGGGATCGAACCTGCAATCTTCTGATTAGAAGTCAGACGCCTTATCCATTAGGCCACAAGGCCACGAGAGACTAGAGGTGGTGAGGGCGTACAAGTGTGTGTGTGTGTGCACTAGGCGGTGGCCGGCGCAGCCGACTGGCAGGAGATGAGTCATGTGGTGTGTGTTATTTTTTGTGGATTTTTTTTCAAAGAAGAGAAAAAAGAAAAAGGGAGAACCAAGAAGGAAGAAGATGAAACCAATTGTAAATAGTCACTGAATAGTGAAAGCTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>180 116 91 82 79 77 48 46 36 35 29 22 18 16 16 14 12 10 10 9 9 8 8 3 3 3 2 2 2 2 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>180 145 91 82 79 77 48 46 36 35 22 18 16 16 14 12 10 10 9 9 8 8 3 3 3 2 2 2 2 2 2 2 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>479 153 141 113 59 32 23</canonical_bands>
                <polymorphic_bands>620 153 113 59 32 23</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>479 439 59 23</canonical_bands>
                <polymorphic_bands>918 59 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGATTTATACAGGCTTCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTCCACCTCATATAATCCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGATTTATACAGGCTTCAAAACTTGACACATAAAATTTCGAAAAAAAAACATTTTTTGAAGTGCCTAAAACACTCGAGAAAAGTTGCCTTTTCACCACAAAAGAACTGCTTTTGACCGTCTCGGTGACGATTCGACGATTTAGTCTGTATTCCGGGAAAATGAGGATAAATGGAATGAAGAGGGCGTATATGCAAATCGCAAAAGATGCTATCCGCGCGCCCCCAAAGGATTATATGAGGTGGAAACTT</canonical_amplicon>
		<polymorphic_amplicon>CTGATTTATACAGGCTTCAAAACTTGACACATAAAATTTCGAAAAAAAAACATTTTTTGAAGTGCCTAAAACACTCGAGAAAAGTTGCCTTTTCACCACAAAAGAACTGCTTTTGACCGTCTCGGWGACGATTCGACGATTTAGTCTGTATTCCGGGAAAATGAGGATAAATGGAATGAAGAGGGCGTATATGCAAATCGCAAAAGATGCTATCCGCGCGCCCCCAAAGGATTATATGAGGTGGAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25282</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>38322</contig_pos>
        <strand>+</strand>
        <context>CGTCTCGGWG[A/G]CGATTCGACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAAAGTTGCCTTTTCACCACAAAAGAACTGCTTTTGACCGTCTCGGTG</left_flank>
        <right_flank>CGATTCGACGATTTAGTCTGTATTCCGGGAAAATGAGGATAAATGGAATG</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTATGAAATTCACCAGTTTCAGAATAAATAAGACTTTCATGAGACTATCTTAACTGTGACTGAATCTGACTTGGTCAAAATAAAATAGTAACATCTGGCTAAACAGAGGCGGAATAAAGATATCTACATATATACATCCACAACAACAAGAAAAAAGGCATTTGGATGGTAATGAAAAAAGAGAAAGATGAAGAAAACAAGTTACTAACTAACTAACCACAAATGGCTATAGACGGTTTAAAGTAGCAAATTTGCAGAAGGAAATTTCTGGGATTCTACCGGGACTAGACAAATAAAATATAGACTTTCAGAATTCCCATTTTCAGGCTTTCGAATGATACCCAAGTCGGGTCGTAACTAAGATATTTATCTGATTTATACAGGCTTCAAAACTTGACACATAAAATTTCGAAAAAAAAACATTTTTTGAAGTGCCTAAAACACTCGAGAAAAGTTGCCTTTTCACCACAAAAGAACTGCTTTTGACCGTCTCGGTGACGATTCGACGATTTAGTCTGTATTCCGGGAAAATGAGGATAAATGGAATGAAGAGGGCGTATATGCAAATCGCAAAAGATGCTATCCGCGCGCCCCCAAAGGATTATATGAGGTGGAAACTTACAAACCTCCAAGATTCGTTCCCTACTTGCTTTATGAGGTGTGGAAAGGTGAATATCCGGGTATATCCACATCCTAAAAAAAGAAAAAAAGATTTGACCCAGGCAGGGATCGAACCTGCAATCTTCTGATTAGAAGTCAGACGCCTTATCCATTAGGCCACAAGGCCACGAGAGACTAGAGGTGGTGAGGGCGTACAAGTGTGTGTGTGTGTGCACTAGGCGGTGGCCGGCGCAGCCGACTGGCAGGAGATGAGTCATGTGGTGTGTGTTATTTTTTGTGGATTTTTTTTCAAAGAAGAGAAAAAAGAAAAAGGGAGAACCAAGAAGGAAGAAGATGAAACCAATTGTAAATAGTCACTGAATAGTGAAAGCTTTTTT</canonical>
            <polymorphic>TTTTATGAAATTCACCAGTTTCAGAATAAATAAGACTTTCATGAGACTATCTTAACTGTGACTGAATCTGACTTGGTCAAAATAAAATAGTAACATCTGGCTAAACAGAGGCGGAATAAAGATATCTACATATATACATCCACAACAACAAGAAAAAAGGCATTTGGATGGTAATGAAAAAAGAGAAAGATGAAGAAAACAAGTTACTAACTAACTAACCACAAATGGCTATAGACGGTTTAAAGTAGCAAATTTGCAGAAGGAAATTTCTGGGATTCTACCGGGACTAGACAAATAAAATATAGACTTTCAGAATTCCCATTTTCAGGCTTTCGAATGATACCCAAGTCGGGTCGTAACTAAGATATTTATCTGATTTATACAGGCTTCAAAACTTGACACATAAAATTTCGAAAAAAAAACATTTTTTGAAGTGCCTAAAACACTCGAGAAAAGTTGCCTTTTCACCACAAAAGAACTGCTTTTGACCGTCTCGGTGRCGATTCGACGATTTAGTCTGTATTCCGGGAAAATGAGGATAAATGGAATGAAGAGGGCGTATATGCAAATCGCAAAAGATGCTATCCGCGCGCCCCCAAAGGATTATATGAGGTGGAAACTTACAAACCTCCAAGATTCGTTCCCTACTTGCTTTATGAGGTGTGGAAAGGTGAATATCCGGGTATATCCACATCCTAAAAAAAGAAAAAAAGATTTGACCCAGGCAGGGATCGAACCTGCAATCTTCTGATTAGAAGTCAGACGCCTTATCCATTAGGCCACAAGGCCACGAGAGACTAGAGGTGGTGAGGGCGTACAAGTGTGTGTGTGTGTGCACTAGGCGGTGGCCGGCGCAGCCGACTGGCAGGAGATGAGTCATGTGGTGTGTGTTATTTTTTGTGGATTTTTTTTCAAAGAAGAGAAAAAAGAAAAAGGGAGAACCAAGAAGGAAGAAGATGAAACCAATTGTAAATAGTCACTGAATAGTGAAAGCTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>479 153 141 113 57 32 25</canonical_bands>
                <polymorphic_bands>620 153 113 57 32 25</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>479 439 57 25</canonical_bands>
                <polymorphic_bands>918 57 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGATTTATACAGGCTTCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTCCACCTCATATAATCCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGATTTATACAGGCTTCAAAACTTGACACATAAAATTTCGAAAAAAAAACATTTTTTGAAGTGCCTAAAACACTCGAGAAAAGTTGCCTTTTCACCACAAAAGAACTGCTTTTGACCGTCTCGGTGACGATTCGACGATTTAGTCTGTATTCCGGGAAAATGAGGATAAATGGAATGAAGAGGGCGTATATGCAAATCGCAAAAGATGCTATCCGCGCGCCCCCAAAGGATTATATGAGGTGGAAACTT</canonical_amplicon>
		<polymorphic_amplicon>CTGATTTATACAGGCTTCAAAACTTGACACATAAAATTTCGAAAAAAAAACATTTTTTGAAGTGCCTAAAACACTCGAGAAAAGTTGCCTTTTCACCACAAAAGAACTGCTTTTGACCGTCTCGGTGRCGATTCGACGATTTAGTCTGTATTCCGGGAAAATGAGGATAAATGGAATGAAGAGGGCGTATATGCAAATCGCAAAAGATGCTATCCGCGCGCCCCCAAAGGATTATATGAGGTGGAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25283</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>38359</contig_pos>
        <strand>+</strand>
        <context>GGGAAAATGA[A/G]GATAAATGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACCGTCTCGGTGACGATTCGACGATTTAGTCTGTATTCCGGGAAAATGA</left_flank>
        <right_flank>GATAAATGGAATGAAGAGGGCGTATATGCAAATCGCAAAAGATGCTATCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCATGAGACTATCTTAACTGTGACTGAATCTGACTTGGTCAAAATAAAATAGTAACATCTGGCTAAACAGAGGCGGAATAAAGATATCTACATATATACATCCACAACAACAAGAAAAAAGGCATTTGGATGGTAATGAAAAAAGAGAAAGATGAAGAAAACAAGTTACTAACTAACTAACCACAAATGGCTATAGACGGTTTAAAGTAGCAAATTTGCAGAAGGAAATTTCTGGGATTCTACCGGGACTAGACAAATAAAATATAGACTTTCAGAATTCCCATTTTCAGGCTTTCGAATGATACCCAAGTCGGGTCGTAACTAAGATATTTATCTGATTTATACAGGCTTCAAAACTTGACACATAAAATTTCGAAAAAAAAACATTTTTTGAAGTGCCTAAAACACTCGAGAAAAGTTGCCTTTTCACCACAAAAGAACTGCTTTTGACCGTCTCGGTGACGATTCGACGATTTAGTCTGTATTCCGGGAAAATGAGGATAAATGGAATGAAGAGGGCGTATATGCAAATCGCAAAAGATGCTATCCGCGCGCCCCCAAAGGATTATATGAGGTGGAAACTTACAAACCTCCAAGATTCGTTCCCTACTTGCTTTATGAGGTGTGGAAAGGTGAATATCCGGGTATATCCACATCCTAAAAAAAGAAAAAAAGATTTGACCCAGGCAGGGATCGAACCTGCAATCTTCTGATTAGAAGTCAGACGCCTTATCCATTAGGCCACAAGGCCACGAGAGACTAGAGGTGGTGAGGGCGTACAAGTGTGTGTGTGTGTGCACTAGGCGGTGGCCGGCGCAGCCGACTGGCAGGAGATGAGTCATGTGGTGTGTGTTATTTTTTGTGGATTTTTTTTCAAAGAAGAGAAAAAAGAAAAAGGGAGAACCAAGAAGGAAGAAGATGAAACCAATTGTAAATAGTCACTGAATAGTGAAAGCTTTTTTTCTACGTCATATAAGGGGGGTTGAAGGGCTAAAAGTG</canonical>
            <polymorphic>TTCATGAGACTATCTTAACTGTGACTGAATCTGACTTGGTCAAAATAAAATAGTAACATCTGGCTAAACAGAGGCGGAATAAAGATATCTACATATATACATCCACAACAACAAGAAAAAAGGCATTTGGATGGTAATGAAAAAAGAGAAAGATGAAGAAAACAAGTTACTAACTAACTAACCACAAATGGCTATAGACGGTTTAAAGTAGCAAATTTGCAGAAGGAAATTTCTGGGATTCTACCGGGACTAGACAAATAAAATATAGACTTTCAGAATTCCCATTTTCAGGCTTTCGAATGATACCCAAGTCGGGTCGTAACTAAGATATTTATCTGATTTATACAGGCTTCAAAACTTGACACATAAAATTTCGAAAAAAAAACATTTTTTGAAGTGCCTAAAACACTCGAGAAAAGTTGCCTTTTCACCACAAAAGAACTGCTTTTGACCGTCTCGGTGACGATTCGACGATTTAGTCTGTATTCCGGGAAAATGARGATAAATGGAATGAAGAGGGCGTATATGCAAATCGCAAAAGATGCTATCCGCGCGCCCCCAAAGGATTATATGAGGTGGAAACTTACAAACCTCCAAGATTCGTTCCCTACTTGCTTTATGAGGTGTGGAAAGGTGAATATCCGGGTATATCCACATCCTAAAAAAAGAAAAAAAGATTTGACCCAGGCAGGGATCGAACCTGCAATCTTCTGATTAGAAGTCAGACGCCTTATCCATTAGGCCACAAGGCCACGAGAGACTAGAGGTGGTGAGGGCGTACAAGTGTGTGTGTGTGTGCACTAGGCGGTGGCCGGCGCAGCCGACTGGCAGGAGATGAGTCATGTGGTGTGTGTTATTTTTTGTGGATTTTTTTTCAAAGAAGAGAAAAAAGAAAAAGGGAGAACCAAGAAGGAAGAAGATGAAACCAATTGTAAATAGTCACTGAATAGTGAAAGCTTTTTTTCTACGTCATATAAGGGGGGTTGAAGGGCTAAAAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGATTTATACAGGCTTCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTCCACCTCATATAATCCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGATTTATACAGGCTTCAAAACTTGACACATAAAATTTCGAAAAAAAAACATTTTTTGAAGTGCCTAAAACACTCGAGAAAAGTTGCCTTTTCACCACAAAAGAACTGCTTTTGACCGTCTCGGTGACGATTCGACGATTTAGTCTGTATTCCGGGAAAATGAGGATAAATGGAATGAAGAGGGCGTATATGCAAATCGCAAAAGATGCTATCCGCGCGCCCCCAAAGGATTATATGAGGTGGAAACTT</canonical_amplicon>
		<polymorphic_amplicon>CTGATTTATACAGGCTTCAAAACTTGACACATAAAATTTCGAAAAAAAAACATTTTTTGAAGTGCCTAAAACACTCGAGAAAAGTTGCCTTTTCACCACAAAAGAACTGCTTTTGACCGTCTCGGTGACGATTCGACGATTTAGTCTGTATTCCGGGAAAATGARGATAAATGGAATGAAGAGGGCGTATATGCAAATCGCAAAAGATGCTATCCGCGCGCCCCCAAAGGATTATATGAGGTGGAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25284</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>39769</contig_pos>
        <strand>+</strand>
        <context>CCCAGGAAAA[A/T]CCACAACAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGGAAAAACCCGGGAAAAAAAACTATATTCAAAAAATGACCCAGGAAAA</left_flank>
        <right_flank>CCACAACAATTCATAAATGCAAATCTCGATGATGACACAAAAACAGTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGAAAAATAACCAGAAAACCATTAAACCAAAATTTTCAGAAAAATTGAAAAATTTTTGAGTTATGTGCCTTTAAAGTCTACAGTAACTCGAAAATATAACTTCCATTGGTTTTTCGGCGAGAAAAAGGTTTAAAATGTTGAGAAAAGCTATAATTACGCCATTTAATGAGTTCAATAGTTCTATTTCCGCAAAAAGTTTCAGAAAAATCATTAAAAAAAGCTTTAAACCAGAGTTTCCGGGAACATTACGAAGAATGCATCTTCAAATACTACAGTAACCGTTTTTCGTTTGTAATTGAGTTTTCACTGAAAAAGTAACAATTTCTTAGAATTTTGCAATTATTTTGTCTGAAAAAAACCCGAAAGTTTTTGTTTTTTGAGTTACGAAATGTGCTCGAGCGCAAAATGTAAATACCGTAGTAAAAACTAGCCTTAATCTCGAGAAGAATGGAAAAACCCGGGAAAAAAAACTATATTCAAAAAATGACCCAGGAAAAACCACAACAATTCATAAATGCAAATCTCGATGATGACACAAAAACAGTTTCTAGCTACGCAGCGCGGCAAAACAGAAAGACGATTCGAAAGCTAACGGGATAAAAATGTACAAGAAAGGGAAAGGGAAGAGAGGAAAGGCCTGTGTGTTATCTTCTTCATTCCGATGGAAGAACCTGATGAATCTGTAGAGAAGACGTCAATTGGAGACGCAGACGTCTGGCGAGAAGAAGAAGCTGATATGATCAATTAGGGGATGTTGTCACTTTGGAGATGGATATGGGAATGTTAGACATTTCGGAAACAATTGTCCCGACCTTGTGATGATCACACTAAAAATATATGCCGTATGACATTATTGTTTTACAGTTTTCTCAGTTTCTGTAAGAGATATCAAATATCTGTCAACCATGAAAATGTAGGTGGCATTATGGCAAACATTTTATCAGTTGACCACTTCTCGATTTCTTTTACACGAATCGAGATAATTGAGCTCAAAGTGA</canonical>
            <polymorphic>GAAGAAAAATAACCAGAAAACCATTAAACCAAAATTTTCAGAAAAATTGAAAAATTTTTGAGTTATGTGCCTTTAAAGTCTACAGTAACTCGAAAATATAACTTCCATTGGTTTTTCGGCGAGAAAAAGGTTTAAAATGTTGAGAAAAGCTATAATTACGCCATTTAATGAGTTCAATAGTTCTATTTCCGCAAAAAGTTTCAGAAAAATCATTAAAAAAAGCTTTAAACCAGAGTTTCCGGGAACATTACGAAGAATGCATCTTCAAATACTACAGTAACCGTTTTTCGTTTGTAATTGAGTTTTCACTGAAAAAGTAACAATTTCTTAGAATTTTGCAATTATTTTGTCTGAAAAAAACCCGAAAGTTTTTGTTTTTTGAGTTACGAAATGTGCTCGAGCGCAAAATGTAAATACCGTAGTAAAAACTAGCCTTAATCTCGAGAAGAATGGAAAAACCCGGGAAAAAAAACTATATTCAAAAAATGACCCAGGAAAAWCCACAACAATTCATAAATGCAAATCTCGATGATGACACAAAAACAGTTTCTAGCTACGCAGCGCGGCAAAACAGAAAGACGATTCGAAAGCTAACGGGATAAAAATGTACAAGAAAGGGAAAGGGAAGAGAGGAAAGGCCTGTGTGTTATCTTCTTCATTCCGATGGAAGAACCTGATGAATCTGTAGAGAAGACGTCAATTGGAGACGCAGACGTCTGGCGAGAAGAAGAAGCTGATATGATCAATTAGGGGATGTTGTCACTTTGGAGATGGATATGGGAATGTTAGACATTTCGGAAACAATTGTCCCGACCTTGTGATGATCACACTAAAAATATATGCCGTATGACATTATTGTTTTACAGTTTTCTCAGTTTCTGTAAGAGATATCAAATATCTGTCAACCATGAAAATGTAGGTGGCATTATGGCAAACATTTTATCAGTTGACCACTTCTCGATTTCTTTTACACGAATCGAGATAATTGAGCTCAAAGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGTAGTAAAAACTAGCCTTAATC</pcr_primer_p1>
		<pcr_primer_p2>GGAATGAAGAAGATAACACACAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CCGTAGTAAAAACTAGCCTTAATCTCGAGAAGAATGGAAAAACCCGGGAAAAAAAACTATATTCAAAAAATGACCCAGGAAAAACCACAACAATTCATAAATGCAAATCTCGATGATGACACAAAAACAGTTTCTAGCTACGCAGCGCGGCAAAACAGAAAGACGATTCGAAAGCTAACGGGATAAAAATGTACAAGAAAGGGAAAGGGAAGAGAGGAAAGGCCTGTGTGTTATCTTCTTCATTCC</canonical_amplicon>
		<polymorphic_amplicon>CCGTAGTAAAAACTAGCCTTAATCTCGAGAAGAATGGAAAAACCCGGGAAAAAAAACTATATTCAAAAAATGACCCAGGAAAAWCCACAACAATTCATAAATGCAAATCTCGATGATGACACAAAAACAGTTTCTAGCTACGCAGCGCGGCAAAACAGAAAGACGATTCGAAAGCTAACGGGATAAAAATGTACAAGAAAGGGAAAGGGAAGAGAGGAAAGGCCTGTGTGTTATCTTCTTCATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25285</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>52158</contig_pos>
        <strand></strand>
        <context>CATAGAGAAC[C/G]CCCATGAGGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAAC</left_flank>
        <right_flank>CCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAAAACTTCCAAAAATCCATGTCTGCTCAAACTTATCAAATGCACAAAACTGCTCTATTGAGCCTTTTAATGCAATTGTTGCTTCCTGGAATTCTAATTATCATTCCATTATGCATTTATATGTTTGTAGTCGTCACAGAGGCGATTCATTTGCAAGGTACAAACTACAAAGACTACAAACTACGAAAATATATTGTTTTTGAAAATCAAAATTCAGAATTTGCAACCAACACACAATTCATGATCGCCTCACATTCGATGTGTTCTTGTTTGGTGATGATCTTCAGTAATCCAAATTATCGAAAATGTTTGAAAACGAAGATTTTCAGCAGTTTTGGGTATTTATTAAAAGATTGGAGATTTACAAAAAAAACCAAAATTTCGTAAAATTTCGAAAATTTCGAAAATTAAAAAACAGAAATTCGGAAAACCCAAAAAGTTTTTAAAGGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCG</canonical>
            <polymorphic>TCCAAAACTTCCAAAAATCCATGTCTGCTCAAACTTATCAAATGCACAAAACTGCTCTATTGAGCCTTTTAATGCAATTGTTGCTTCCTGGAATTCTAATTATCATTCCATTATGCATTTATATGTTTGTAGTCGTCACAGAGGCGATTCATTTGCAAGGTACAAACTACAAAGACTACAAACTACGAAAATATATTGTTTTTGAAAATCAAAATTCAGAATTTGCAACCAACACACAATTCATGATCGCCTCACATTCGATGTGTTCTTGTTTGGTGATGATCTTCAGTAATCCAAATTATCGAAAATGTTTGAAAACGAAGATTTTCAGCAGTTTTGGGTATTTATTAAAAGATTGGAGATTTACAAAAAAAACCAAAATTTCGTAAAATTTCGAAAATTTCGAAAATTAAAAAACAGAAATTCGGAAAACCCAAAAAGTTTTTAAAGGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACSCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>507 493</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACAGAAATTCGGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>AATTTTAAAGGAGGCGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAAAACAGAAATTCGGAAAACCCAAAAAGTTTTTAAAGGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATT</canonical_amplicon>
		<polymorphic_amplicon>AAAAACAGAAATTCGGAAAACCCAAAAAGTTTTTAAAGGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACSCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25286</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>52209</contig_pos>
        <strand></strand>
        <context>CAGCGCTGCT[A/G]CCGGCTGAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCT</left_flank>
        <right_flank>CCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGCTCTATTGAGCCTTTTAATGCAATTGTTGCTTCCTGGAATTCTAATTATCATTCCATTATGCATTTATATGTTTGTAGTCGTCACAGAGGCGATTCATTTGCAAGGTACAAACTACAAAGACTACAAACTACGAAAATATATTGTTTTTGAAAATCAAAATTCAGAATTTGCAACCAACACACAATTCATGATCGCCTCACATTCGATGTGTTCTTGTTTGGTGATGATCTTCAGTAATCCAAATTATCGAAAATGTTTGAAAACGAAGATTTTCAGCAGTTTTGGGTATTTATTAAAAGATTGGAGATTTACAAAAAAAACCAAAATTTCGTAAAATTTCGAAAATTTCGAAAATTAAAAAACAGAAATTCGGAAAACCCAAAAAGTTTTTAAAGGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAATTGGT</canonical>
            <polymorphic>CTGCTCTATTGAGCCTTTTAATGCAATTGTTGCTTCCTGGAATTCTAATTATCATTCCATTATGCATTTATATGTTTGTAGTCGTCACAGAGGCGATTCATTTGCAAGGTACAAACTACAAAGACTACAAACTACGAAAATATATTGTTTTTGAAAATCAAAATTCAGAATTTGCAACCAACACACAATTCATGATCGCCTCACATTCGATGTGTTCTTGTTTGGTGATGATCTTCAGTAATCCAAATTATCGAAAATGTTTGAAAACGAAGATTTTCAGCAGTTTTGGGTATTTATTAAAAGATTGGAGATTTACAAAAAAAACCAAAATTTCGTAAAATTTCGAAAATTTCGAAAATTAAAAAACAGAAATTCGGAAAACCCAAAAAGTTTTTAAAGGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTRCCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAATTGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCCTGATATTTTGCATAGA</pcr_primer_p1>
		<pcr_primer_p2>CCACCAAAGTTCGATTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGG</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTRCCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25287</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>52253</contig_pos>
        <strand></strand>
        <context>CGACCGATGG[T/C]CTACATAAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGG</left_flank>
        <right_flank>CTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAATTATCATTCCATTATGCATTTATATGTTTGTAGTCGTCACAGAGGCGATTCATTTGCAAGGTACAAACTACAAAGACTACAAACTACGAAAATATATTGTTTTTGAAAATCAAAATTCAGAATTTGCAACCAACACACAATTCATGATCGCCTCACATTCGATGTGTTCTTGTTTGGTGATGATCTTCAGTAATCCAAATTATCGAAAATGTTTGAAAACGAAGATTTTCAGCAGTTTTGGGTATTTATTAAAAGATTGGAGATTTACAAAAAAAACCAAAATTTCGTAAAATTTCGAAAATTTCGAAAATTAAAAAACAGAAATTCGGAAAACCCAAAAAGTTTTTAAAGGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAATTGGTTTCTATTTGGTCTGGTTTCAATCGCCAAAAATGAAGGGATACAA</canonical>
            <polymorphic>CTAATTATCATTCCATTATGCATTTATATGTTTGTAGTCGTCACAGAGGCGATTCATTTGCAAGGTACAAACTACAAAGACTACAAACTACGAAAATATATTGTTTTTGAAAATCAAAATTCAGAATTTGCAACCAACACACAATTCATGATCGCCTCACATTCGATGTGTTCTTGTTTGGTGATGATCTTCAGTAATCCAAATTATCGAAAATGTTTGAAAACGAAGATTTTCAGCAGTTTTGGGTATTTATTAAAAGATTGGAGATTTACAAAAAAAACCAAAATTTCGTAAAATTTCGAAAATTTCGAAAATTAAAAAACAGAAATTCGGAAAACCCAAAAAGTTTTTAAAGGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGYCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAATTGGTTTCTATTTGGTCTGGTTTCAATCGCCAAAAATGAAGGGATACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GACNNNNNGTC</site>
                <isoschizomers>
                    <enzyme>AhdI</enzyme>
                    <enzyme>AspEI</enzyme>
                    <enzyme>Eam1105I</enzyme>
                    <enzyme>EclHKI</enzyme>
                    <enzyme>NruGI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCCTGATATTTTGCATAGA</pcr_primer_p1>
		<pcr_primer_p2>CCACCAAAGTTCGATTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGG</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGYCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25288</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>52267</contig_pos>
        <strand></strand>
        <context>CATAAGCGCG[G/C]CGCGATTTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCG</left_flank>
        <right_flank>CGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTATGCATTTATATGTTTGTAGTCGTCACAGAGGCGATTCATTTGCAAGGTACAAACTACAAAGACTACAAACTACGAAAATATATTGTTTTTGAAAATCAAAATTCAGAATTTGCAACCAACACACAATTCATGATCGCCTCACATTCGATGTGTTCTTGTTTGGTGATGATCTTCAGTAATCCAAATTATCGAAAATGTTTGAAAACGAAGATTTTCAGCAGTTTTGGGTATTTATTAAAAGATTGGAGATTTACAAAAAAAACCAAAATTTCGTAAAATTTCGAAAATTTCGAAAATTAAAAAACAGAAATTCGGAAAACCCAAAAAGTTTTTAAAGGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAATTGGTTTCTATTTGGTCTGGTTTCAATCGCCAAAAATGAAGGGATACAAGTATTGTTTGTGTT</canonical>
            <polymorphic>ATTATGCATTTATATGTTTGTAGTCGTCACAGAGGCGATTCATTTGCAAGGTACAAACTACAAAGACTACAAACTACGAAAATATATTGTTTTTGAAAATCAAAATTCAGAATTTGCAACCAACACACAATTCATGATCGCCTCACATTCGATGTGTTCTTGTTTGGTGATGATCTTCAGTAATCCAAATTATCGAAAATGTTTGAAAACGAAGATTTTCAGCAGTTTTGGGTATTTATTAAAAGATTGGAGATTTACAAAAAAAACCAAAATTTCGTAAAATTTCGAAAATTTCGAAAATTAAAAAACAGAAATTCGGAAAACCCAAAAAGTTTTTAAAGGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGSCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAATTGGTTTCTATTTGGTCTGGTTTCAATCGCCAAAAATGAAGGGATACAAGTATTGTTTGTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>498 436 27 26 8 5</canonical_bands>
                <polymorphic_bands>503 436 27 26 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 421 61 18</canonical_bands>
                <polymorphic_bands>561 421 18</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCCTGATATTTTGCATAGA</pcr_primer_p1>
		<pcr_primer_p2>CCACCAAAGTTCGATTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGG</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGSCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25289</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>52351</contig_pos>
        <strand></strand>
        <context>AACAGAAACA[A/G]TACAAATCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACA</left_flank>
        <right_flank>TACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTGTTTTTGAAAATCAAAATTCAGAATTTGCAACCAACACACAATTCATGATCGCCTCACATTCGATGTGTTCTTGTTTGGTGATGATCTTCAGTAATCCAAATTATCGAAAATGTTTGAAAACGAAGATTTTCAGCAGTTTTGGGTATTTATTAAAAGATTGGAGATTTACAAAAAAAACCAAAATTTCGTAAAATTTCGAAAATTTCGAAAATTAAAAAACAGAAATTCGGAAAACCCAAAAAGTTTTTAAAGGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAATTGGTTTCTATTTGGTCTGGTTTCAATCGCCAAAAATGAAGGGATACAAGTATTGTTTGTGTTATTTACAGGTAAAATTGAAAGTCCAGAAATTCAGAATCACAGATTTTCAGAATATCAGGTTTTCGGAATATTCGAATCGCAAAA</canonical>
            <polymorphic>TATTGTTTTTGAAAATCAAAATTCAGAATTTGCAACCAACACACAATTCATGATCGCCTCACATTCGATGTGTTCTTGTTTGGTGATGATCTTCAGTAATCCAAATTATCGAAAATGTTTGAAAACGAAGATTTTCAGCAGTTTTGGGTATTTATTAAAAGATTGGAGATTTACAAAAAAAACCAAAATTTCGTAAAATTTCGAAAATTTCGAAAATTAAAAAACAGAAATTCGGAAAACCCAAAAAGTTTTTAAAGGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACARTACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAATTGGTTTCTATTTGGTCTGGTTTCAATCGCCAAAAATGAAGGGATACAAGTATTGTTTGTGTTATTTACAGGTAAAATTGAAAGTCCAGAAATTCAGAATCACAGATTTTCAGAATATCAGGTTTTCGGAATATTCGAATCGCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTGATATTTTGCATAGAGAAC</pcr_primer_p1>
		<pcr_primer_p2>GGTACATAGAATGACAGGTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>431</pcr_amplicon_size>
		<canonical_amplicon>TCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACC</canonical_amplicon>
		<polymorphic_amplicon>TCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACARTACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25290</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>52411</contig_pos>
        <strand></strand>
        <context>ATAGTGAGAC[G/A]AATKTCACAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGAC</left_flank>
        <right_flank>AATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATTCGATGTGTTCTTGTTTGGTGATGATCTTCAGTAATCCAAATTATCGAAAATGTTTGAAAACGAAGATTTTCAGCAGTTTTGGGTATTTATTAAAAGATTGGAGATTTACAAAAAAAACCAAAATTTCGTAAAATTTCGAAAATTTCGAAAATTAAAAAACAGAAATTCGGAAAACCCAAAAAGTTTTTAAAGGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAATTGGTTTCTATTTGGTCTGGTTTCAATCGCCAAAAATGAAGGGATACAAGTATTGTTTGTGTTATTTACAGGTAAAATTGAAAGTCCAGAAATTCAGAATCACAGATTTTCAGAATATCAGGTTTTCGGAATATTCGAATCGCAAAATTTGAAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCA</canonical>
            <polymorphic>ACATTCGATGTGTTCTTGTTTGGTGATGATCTTCAGTAATCCAAATTATCGAAAATGTTTGAAAACGAAGATTTTCAGCAGTTTTGGGTATTTATTAAAAGATTGGAGATTTACAAAAAAAACCAAAATTTCGTAAAATTTCGAAAATTTCGAAAATTAAAAAACAGAAATTCGGAAAACCCAAAAAGTTTTTAAAGGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACRAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAATTGGTTTCTATTTGGTCTGGTTTCAATCGCCAAAAATGAAGGGATACAAGTATTGTTTGTGTTATTTACAGGTAAAATTGAAAGTCCAGAAATTCAGAATCACAGATTTTCAGAATATCAGGTTTTCGGAATATTCGAATCGCAAAATTTGAAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>270 206 126 113 100 55 26 23 10 9 8 8 8 8 8 8 8 6</canonical_bands>
                <polymorphic_bands>370 206 126 113 55 26 23 10 9 8 8 8 8 8 8 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTGATATTTTGCATAGAGAAC</pcr_primer_p1>
		<pcr_primer_p2>GGTACATAGAATGACAGGTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>431</pcr_amplicon_size>
		<canonical_amplicon>TCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACC</canonical_amplicon>
		<polymorphic_amplicon>TCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACRAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25291</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>52415</contig_pos>
        <strand></strand>
        <context>TGAGACRAAT[T/G]TCACAAATGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAAT</left_flank>
        <right_flank>TCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGATGTGTTCTTGTTTGGTGATGATCTTCAGTAATCCAAATTATCGAAAATGTTTGAAAACGAAGATTTTCAGCAGTTTTGGGTATTTATTAAAAGATTGGAGATTTACAAAAAAAACCAAAATTTCGTAAAATTTCGAAAATTTCGAAAATTAAAAAACAGAAATTCGGAAAACCCAAAAAGTTTTTAAAGGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAATTGGTTTCTATTTGGTCTGGTTTCAATCGCCAAAAATGAAGGGATACAAGTATTGTTTGTGTTATTTACAGGTAAAATTGAAAGTCCAGAAATTCAGAATCACAGATTTTCAGAATATCAGGTTTTCGGAATATTCGAATCGCAAAATTTGAAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAA</canonical>
            <polymorphic>TCGATGTGTTCTTGTTTGGTGATGATCTTCAGTAATCCAAATTATCGAAAATGTTTGAAAACGAAGATTTTCAGCAGTTTTGGGTATTTATTAAAAGATTGGAGATTTACAAAAAAAACCAAAATTTCGTAAAATTTCGAAAATTTCGAAAATTAAAAAACAGAAATTCGGAAAACCCAAAAAGTTTTTAAAGGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATKTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAATTGGTTTCTATTTGGTCTGGTTTCAATCGCCAAAAATGAAGGGATACAAGTATTGTTTGTGTTATTTACAGGTAAAATTGAAAGTCCAGAAATTCAGAATCACAGATTTTCAGAATATCAGGTTTTCGGAATATTCGAATCGCAAAATTTGAAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>270 206 122 113 100 55 26 23 10 10 9 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>370 206 122 113 55 26 23 10 10 9 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>206 181 100 83 77 55 46 39 34 26 15 14 12 10 10 9 9 9 9 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>206 181 146 83 77 55 39 34 26 15 14 12 10 10 9 9 9 9 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTGATATTTTGCATAGAGAAC</pcr_primer_p1>
		<pcr_primer_p2>GGTACATAGAATGACAGGTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>431</pcr_amplicon_size>
		<canonical_amplicon>TCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACC</canonical_amplicon>
		<polymorphic_amplicon>TCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATKTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25292</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>52457</contig_pos>
        <strand></strand>
        <context>cttttttttt[A/T]aattaaagaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTT</left_flank>
        <right_flank>AATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCGAAAATGTTTGAAAACGAAGATTTTCAGCAGTTTTGGGTATTTATTAAAAGATTGGAGATTTACAAAAAAAACCAAAATTTCGTAAAATTTCGAAAATTTCGAAAATTAAAAAACAGAAATTCGGAAAACCCAAAAAGTTTTTAAAGGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAATTGGTTTCTATTTGGTCTGGTTTCAATCGCCAAAAATGAAGGGATACAAGTATTGTTTGTGTTATTTACAGGTAAAATTGAAAGTCCAGAAATTCAGAATCACAGATTTTCAGAATATCAGGTTTTCGGAATATTCGAATCGCAAAATTTGAAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATT</canonical>
            <polymorphic>TATCGAAAATGTTTGAAAACGAAGATTTTCAGCAGTTTTGGGTATTTATTAAAAGATTGGAGATTTACAAAAAAAACCAAAATTTCGTAAAATTTCGAAAATTTCGAAAATTAAAAAACAGAAATTCGGAAAACCCAAAAAGTTTTTAAAGGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTWAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAATTGGTTTCTATTTGGTCTGGTTTCAATCGCCAAAAATGAAGGGATACAAGTATTGTTTGTGTTATTTACAGGTAAAATTGAAAGTCCAGAAATTCAGAATCACAGATTTTCAGAATATCAGGTTTTCGGAATATTCGAATCGCAAAATTTGAAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 205 147 147</canonical_bands>
                <polymorphic_bands>648 205 147</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>256 205 202 135 62 49 35 17 17 12 5 5</canonical_bands>
                <polymorphic_bands>256 205 202 135 62 49 35 17 17 17 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGCTGGAAATAGTTTCAATAAT</pcr_primer_p1>
		<pcr_primer_p2>ACTCATTGGATTTTGAGAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGT</canonical_amplicon>
		<polymorphic_amplicon>CTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTWAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25293</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>52469</contig_pos>
        <strand></strand>
        <context>attaaagaaa[G/A]ttwttttttr</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAA</left_flank>
        <right_flank>TTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAAACGAAGATTTTCAGCAGTTTTGGGTATTTATTAAAAGATTGGAGATTTACAAAAAAAACCAAAATTTCGTAAAATTTCGAAAATTTCGAAAATTAAAAAACAGAAATTCGGAAAACCCAAAAAGTTTTTAAAGGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAATTGGTTTCTATTTGGTCTGGTTTCAATCGCCAAAAATGAAGGGATACAAGTATTGTTTGTGTTATTTACAGGTAAAATTGAAAGTCCAGAAATTCAGAATCACAGATTTTCAGAATATCAGGTTTTCGGAATATTCGAATCGCAAAATTTGAAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGA</canonical>
            <polymorphic>TTGAAAACGAAGATTTTCAGCAGTTTTGGGTATTTATTAAAAGATTGGAGATTTACAAAAAAAACCAAAATTTCGTAAAATTTCGAAAATTTCGAAAATTAAAAAACAGAAATTCGGAAAACCCAAAAAGTTTTTAAAGGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAARTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAATTGGTTTCTATTTGGTCTGGTTTCAATCGCCAAAAATGAAGGGATACAAGTATTGTTTGTGTTATTTACAGGTAAAATTGAAAGTCCAGAAATTCAGAATCACAGATTTTCAGAATATCAGGTTTTCGGAATATTCGAATCGCAAAATTTGAAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGCTGGAAATAGTTTCAATAAT</pcr_primer_p1>
		<pcr_primer_p2>ACTCATTGGATTTTGAGAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGT</canonical_amplicon>
		<polymorphic_amplicon>CTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAARTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25294</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>52472</contig_pos>
        <strand></strand>
        <context>aaagaaartt[T/A]ttttttratg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTT</left_flank>
        <right_flank>TTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACGAAGATTTTCAGCAGTTTTGGGTATTTATTAAAAGATTGGAGATTTACAAAAAAAACCAAAATTTCGTAAAATTTCGAAAATTTCGAAAATTAAAAAACAGAAATTCGGAAAACCCAAAAAGTTTTTAAAGGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAATTGGTTTCTATTTGGTCTGGTTTCAATCGCCAAAAATGAAGGGATACAAGTATTGTTTGTGTTATTTACAGGTAAAATTGAAAGTCCAGAAATTCAGAATCACAGATTTTCAGAATATCAGGTTTTCGGAATATTCGAATCGCAAAATTTGAAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAAT</canonical>
            <polymorphic>AAAACGAAGATTTTCAGCAGTTTTGGGTATTTATTAAAAGATTGGAGATTTACAAAAAAAACCAAAATTTCGTAAAATTTCGAAAATTTCGAAAATTAAAAAACAGAAATTCGGAAAACCCAAAAAGTTTTTAAAGGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTWTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAATTGGTTTCTATTTGGTCTGGTTTCAATCGCCAAAAATGAAGGGATACAAGTATTGTTTGTGTTATTTACAGGTAAAATTGAAAGTCCAGAAATTCAGAATCACAGATTTTCAGAATATCAGGTTTTCGGAATATTCGAATCGCAAAATTTGAAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGCTGGAAATAGTTTCAATAAT</pcr_primer_p1>
		<pcr_primer_p2>ACTCATTGGATTTTGAGAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGT</canonical_amplicon>
		<polymorphic_amplicon>CTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTWTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25295</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>52479</contig_pos>
        <strand></strand>
        <context>rttwtttttt[A/G]atgtcaaaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTT</left_flank>
        <right_flank>ATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATTTTCAGCAGTTTTGGGTATTTATTAAAAGATTGGAGATTTACAAAAAAAACCAAAATTTCGTAAAATTTCGAAAATTTCGAAAATTAAAAAACAGAAATTCGGAAAACCCAAAAAGTTTTTAAAGGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAATTGGTTTCTATTTGGTCTGGTTTCAATCGCCAAAAATGAAGGGATACAAGTATTGTTTGTGTTATTTACAGGTAAAATTGAAAGTCCAGAAATTCAGAATCACAGATTTTCAGAATATCAGGTTTTCGGAATATTCGAATCGCAAAATTTGAAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAA</canonical>
            <polymorphic>AGATTTTCAGCAGTTTTGGGTATTTATTAAAAGATTGGAGATTTACAAAAAAAACCAAAATTTCGTAAAATTTCGAAAATTTCGAAAATTAAAAAACAGAAATTCGGAAAACCCAAAAAGTTTTTAAAGGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTRATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAATTGGTTTCTATTTGGTCTGGTTTCAATCGCCAAAAATGAAGGGATACAAGTATTGTTTGTGTTATTTACAGGTAAAATTGAAAGTCCAGAAATTCAGAATCACAGATTTTCAGAATATCAGGTTTTCGGAATATTCGAATCGCAAAATTTGAAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>278 205 202 135 62 35 27 17 17 12 5 5</canonical_bands>
                <polymorphic_bands>278 205 202 135 62 35 34 27 12 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGCTGGAAATAGTTTCAATAAT</pcr_primer_p1>
		<pcr_primer_p2>ACTCATTGGATTTTGAGAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGT</canonical_amplicon>
		<polymorphic_amplicon>CTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTRATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25296</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>52504</contig_pos>
        <strand></strand>
        <context>ttaatCATTC[C/A]CTACGCAATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTC</left_flank>
        <right_flank>CTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAAAAGATTGGAGATTTACAAAAAAAACCAAAATTTCGTAAAATTTCGAAAATTTCGAAAATTAAAAAACAGAAATTCGGAAAACCCAAAAAGTTTTTAAAGGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAATTGGTTTCTATTTGGTCTGGTTTCAATCGCCAAAAATGAAGGGATACAAGTATTGTTTGTGTTATTTACAGGTAAAATTGAAAGTCCAGAAATTCAGAATCACAGATTTTCAGAATATCAGGTTTTCGGAATATTCGAATCGCAAAATTTGAAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAAT</canonical>
            <polymorphic>ATTAAAAGATTGGAGATTTACAAAAAAAACCAAAATTTCGTAAAATTTCGAAAATTTCGAAAATTAAAAAACAGAAATTCGGAAAACCCAAAAAGTTTTTAAAGGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCMCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAATTGGTTTCTATTTGGTCTGGTTTCAATCGCCAAAAATGAAGGGATACAAGTATTGTTTGTGTTATTTACAGGTAAAATTGAAAGTCCAGAAATTCAGAATCACAGATTTTCAGAATATCAGGTTTTCGGAATATTCGAATCGCAAAATTTGAAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGCTGGAAATAGTTTCAATAAT</pcr_primer_p1>
		<pcr_primer_p2>ACTCATTGGATTTTGAGAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGT</canonical_amplicon>
		<polymorphic_amplicon>CTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCMCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25297</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>52538</contig_pos>
        <strand></strand>
        <context>TTTTTCTCTC[G/A]ATTTTTTCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTC</left_flank>
        <right_flank>ATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCGTAAAATTTCGAAAATTTCGAAAATTAAAAAACAGAAATTCGGAAAACCCAAAAAGTTTTTAAAGGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAATTGGTTTCTATTTGGTCTGGTTTCAATCGCCAAAAATGAAGGGATACAAGTATTGTTTGTGTTATTTACAGGTAAAATTGAAAGTCCAGAAATTCAGAATCACAGATTTTCAGAATATCAGGTTTTCGGAATATTCGAATCGCAAAATTTGAAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTC</canonical>
            <polymorphic>ATTTCGTAAAATTTCGAAAATTTCGAAAATTAAAAAACAGAAATTCGGAAAACCCAAAAAGTTTTTAAAGGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCRATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAATTGGTTTCTATTTGGTCTGGTTTCAATCGCCAAAAATGAAGGGATACAAGTATTGTTTGTGTTATTTACAGGTAAAATTGAAAGTCCAGAAATTCAGAATCACAGATTTTCAGAATATCAGGTTTTCGGAATATTCGAATCGCAAAATTTGAAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>303 297 198 178 15 9</canonical_bands>
                <polymorphic_bands>481 297 198 15 9</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>358 255 112 98 88 41 24 24</canonical_bands>
                <polymorphic_bands>613 112 98 88 41 24 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGCTGGAAATAGTTTCAATAAT</pcr_primer_p1>
		<pcr_primer_p2>ACTCATTGGATTTTGAGAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGT</canonical_amplicon>
		<polymorphic_amplicon>CTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCRATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25298</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>52578</contig_pos>
        <strand></strand>
        <context>ATATTCGTAA[T/C]YAGTCATTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAA</left_flank>
        <right_flank>CAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTCGGAAAACCCAAAAAGTTTTTAAAGGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAATTGGTTTCTATTTGGTCTGGTTTCAATCGCCAAAAATGAAGGGATACAAGTATTGTTTGTGTTATTTACAGGTAAAATTGAAAGTCCAGAAATTCAGAATCACAGATTTTCAGAATATCAGGTTTTCGGAATATTCGAATCGCAAAATTTGAAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCGAATTAGAGAGTTCAA</canonical>
            <polymorphic>AAATTCGGAAAACCCAAAAAGTTTTTAAAGGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAAYCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAATTGGTTTCTATTTGGTCTGGTTTCAATCGCCAAAAATGAAGGGATACAAGTATTGTTTGTGTTATTTACAGGTAAAATTGAAAGTCCAGAAATTCAGAATCACAGATTTTCAGAATATCAGGTTTTCGGAATATTCGAATCGCAAAATTTGAAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCGAATTAGAGAGTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTGGAAATAGTTTCAATAATGT</pcr_primer_p1>
		<pcr_primer_p2>TCCAGCAATTATATGTAAAGTCAG</pcr_primer_p2>
		<pcr_amplicon_size>306</pcr_amplicon_size>
		<canonical_amplicon>GCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGA</canonical_amplicon>
		<polymorphic_amplicon>GCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAAYCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25299</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>52579</contig_pos>
        <strand></strand>
        <context>TATTCGTAAY[C/T]AGTCATTTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAAT</left_flank>
        <right_flank>AGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCAT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCGGAAAACCCAAAAAGTTTTTAAAGGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAATTGGTTTCTATTTGGTCTGGTTTCAATCGCCAAAAATGAAGGGATACAAGTATTGTTTGTGTTATTTACAGGTAAAATTGAAAGTCCAGAAATTCAGAATCACAGATTTTCAGAATATCAGGTTTTCGGAATATTCGAATCGCAAAATTTGAAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCGAATTAGAGAGTTCAAA</canonical>
            <polymorphic>AATTCGGAAAACCCAAAAAGTTTTTAAAGGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATYAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAATTGGTTTCTATTTGGTCTGGTTTCAATCGCCAAAAATGAAGGGATACAAGTATTGTTTGTGTTATTTACAGGTAAAATTGAAAGTCCAGAAATTCAGAATCACAGATTTTCAGAATATCAGGTTTTCGGAATATTCGAATCGCAAAATTTGAAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCGAATTAGAGAGTTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTGGAAATAGTTTCAATAATGT</pcr_primer_p1>
		<pcr_primer_p2>TCCAGCAATTATATGTAAAGTCAG</pcr_primer_p2>
		<pcr_amplicon_size>306</pcr_amplicon_size>
		<canonical_amplicon>GCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGA</canonical_amplicon>
		<polymorphic_amplicon>GCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATYAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25300</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>52655</contig_pos>
        <strand></strand>
        <context>CTACTTATTA[C/T]CCGCTGACTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTA</left_flank>
        <right_flank>CCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAAT</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAATTGGTTTCTATTTGGTCTGGTTTCAATCGCCAAAAATGAAGGGATACAAGTATTGTTTGTGTTATTTACAGGTAAAATTGAAAGTCCAGAAATTCAGAATCACAGATTTTCAGAATATCAGGTTTTCGGAATATTCGAATCGCAAAATTTGAAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCGAATTAGAGAGTTCAAAATTGTAGTTCGTAGTTTTGTAGTCTTACGTGTAAACCACCAGAACCACTGAAACGGCTCCAATTCCAGCAACAGCT</canonical>
            <polymorphic>ACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCTGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAATTTTTTTTCAGTGTATTGAAAATATTCAACAGAAACAATACAAATCGAACTTTGGTGGAGCCTGCTGGAAATAGTTTCAATAATGTGATAGTGAGACGAATTTCACAAATGGACCATTGATTTTTGATTTTAACTTTTTTTTTAAATTAAAGAAAGTTTTTTTTTAATGTCAAAATATAATTAATCATTCCCTACGCAATCCATTTTTTTCTATTTTTTCTCTCGATTTTTTCACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTAYCCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAATTGGTTTCTATTTGGTCTGGTTTCAATCGCCAAAAATGAAGGGATACAAGTATTGTTTGTGTTATTTACAGGTAAAATTGAAAGTCCAGAAATTCAGAATCACAGATTTTCAGAATATCAGGTTTTCGGAATATTCGAATCGCAAAATTTGAAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCGAATTAGAGAGTTCAAAATTGTAGTTCGTAGTTTTGTAGTCTTACGTGTAAACCACCAGAACCACTGAAACGGCTCCAATTCCAGCAACAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTGTCATTCTATGTACCTGAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTCTGGACTTTCAATTTTACC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTACCCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAATTGGTTTCTATTTGGTCTGGTTTCAATCGCCAAAAATGAAGGGATACAAGTATTGTTTGTGTTATTTACAGGTAAAATTGAAAGTCCAGAAAT</canonical_amplicon>
		<polymorphic_amplicon>ACCTGTCATTCTATGTACCTGATATTCGTAATCAGTCATTTCCATTCATTTTTTCTCTCAAAATCCAATGAGTCCGTCTCCATGTCCCAGCAGTATCCCTACTTATTAYCCGCTGACTTTACATATAATTGCTGGAATTTCCATTCCAATTAACTTAATTGGTTTCTATTTGGTCTGGTTTCAATCGCCAAAAATGAAGGGATACAAGTATTGTTTGTGTTATTTACAGGTAAAATTGAAAGTCCAGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25301</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>62486</contig_pos>
        <strand>+</strand>
        <context>GTTAACAATT[C/T]TCTGGAGTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTTGCGTTTTTTCTCCAATTTCCATTTCCCTATCTCTTGTTAACAATT</left_flank>
        <right_flank>TCTGGAGTCTAGTGAGCCGATATTATCAGAGATTATCAAAAATGCTCCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATATATAAGGAAGATTCAAAATCACAAAGATCGGAATAGGACGAGATACAGTCTAAAGCATTTTTGGGCAGGTATGGGCCCAAAATCTAATCTCGCCAAAATATGCCTTGTTTATACTCATTTCGAAGCTTAAGACCTGAGAAACTCAAAACTTCCCAAAAAAAATTTCGAAGTATTTCGGAATCTTCCAATTCTGAGAAATCTGGCTCCTTAAATGTTTATCTTGCTATCTTCTAATTTCACCGACTCACCCCCCACGTTCCTCACAATCAGTAGACAAACAGTAAGCGGAGGTCCAGTTGTGGGCGGAGCCAAGGGGCAATTTATAAAAATAGGGGCCTAATTCTTATTTGGTAACTATTTTTTTCGTATTTTTCTAAATTTTCAAAATGGAGTCTTCCAATTTTCCATCAGTTTGAACATTCTTCAAAAAATTGGATTTCAAAAATCTTGCGTTTTTTCTCCAATTTCCATTTCCCTATCTCTTGTTAACAATTCTCTGGAGTCTAGTGAGCCGATATTATCAGAGATTATCAAAAATGCTCCAGATTTTGATTGGTTTTGCACATTCCAATGGCTGATGATGATCTGTCTTTTATGATTTTTCTTCCGAAATCCGATTCTCAGGAAACTTTGAATGTACGTTATTTTTTAAAATTCCAATGTTTTCAGTCTTCGATTTCTAGAACCTTCTTGAAGGTTCCAAAAAACTCAATTTCCCTTTTTTTACGGCTTTTTTCAAAAGACCCAAAAAAAATTTAATGTTTTCCATCTTTAATTGTACTTTGGATTTTGGCGGCAACTCAAAAAACTTTTAATTTGATCTAGGGATTTCCATGAAAATTTTTTTTCGGTTTTCCGAAATTTCGAAAACTTTTTAGAGACCCAAAAATATGATGAAAATGAAAAGGATTACTGTAGAGAAAAACATTAGAAAATCCAAAAAAATTACTGTAGGAAAGAATTAATTGAAAATCAAAAGGATTACTGTAAGGAGA</canonical>
            <polymorphic>TTATATATAAGGAAGATTCAAAATCACAAAGATCGGAATAGGACGAGATACAGTCTAAAGCATTTTTGGGCAGGTATGGGCCCAAAATCTAATCTCGCCAAAATATGCCTTGTTTATACTCATTTCGAAGCTTAAGACCTGAGAAACTCAAAACTTCCCAAAAAAAATTTCGAAGTATTTCGGAATCTTCCAATTCTGAGAAATCTGGCTCCTTAAATGTTTATCTTGCTATCTTCTAATTTCACCGACTCACCCCCCACGTTCCTCACAATCAGTAGACAAACAGTAAGCGGAGGTCCAGTTGTGGGCGGAGCCAAGGGGCAATTTATAAAAATAGGGGCCTAATTCTTATTTGGTAACTATTTTTTTCGTATTTTTCTAAATTTTCAAAATGGAGTCTTCCAATTTTCCATCAGTTTGAACATTCTTCAAAAAATTGGATTTCAAAAATCTTGCGTTTTTTCTCCAATTTCCATTTCCCTATCTCTTGTTAACAATTYTCTGGAGTCTAGTGAGCCGATATTATCAGAGATTATCAAAAATGCTCCAGATTTTGATTGGTTTTGCACATTCCAATGGCTGATGATGATCTGTCTTTTATGATTTTTCTTCCGAAATCCGATTCTCAGGAAACTTTGAATGTACGTTATTTTTTAAAATTCCAATGTTTTCAGTCTTCGATTTCTAGAACCTTCTTGAAGGTTCCAAAAAACTCAATTTCCCTTTTTTTACGGCTTTTTTCAAAAGACCCAAAAAAAATTTAATGTTTTCCATCTTTAATTGTACTTTGGATTTTGGCGGCAACTCAAAAAACTTTTAATTTGATCTAGGGATTTCCATGAAAATTTTTTTTCGGTTTTCCGAAATTTCGAAAACTTTTTAGAGACCCAAAAATATGATGAAAATGAAAAGGATTACTGTAGAGAAAAACATTAGAAAATCCAAAAAAATTACTGTAGGAAAGAATTAATTGAAAATCAAAAGGATTACTGTAAGGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCTTCCAATTTTCCATCAG</pcr_primer_p1>
		<pcr_primer_p2>GTACATTCAAAGTTTCCTGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTCTTCCAATTTTCCATCAGTTTGAACATTCTTCAAAAAATTGGATTTCAAAAATCTTGCGTTTTTTCTCCAATTTCCATTTCCCTATCTCTTGTTAACAATTCTCTGGAGTCTAGTGAGCCGATATTATCAGAGATTATCAAAAATGCTCCAGATTTTGATTGGTTTTGCACATTCCAATGGCTGATGATGATCTGTCTTTTATGATTTTTCTTCCGAAATCCGATTCTCAGGAAACTTTGAATGTAC</canonical_amplicon>
		<polymorphic_amplicon>AGTCTTCCAATTTTCCATCAGTTTGAACATTCTTCAAAAAATTGGATTTCAAAAATCTTGCGTTTTTTCTCCAATTTCCATTTCCCTATCTCTTGTTAACAATTYTCTGGAGTCTAGTGAGCCGATATTATCAGAGATTATCAAAAATGCTCCAGATTTTGATTGGTTTTGCACATTCCAATGGCTGATGATGATCTGTCTTTTATGATTTTTCTTCCGAAATCCGATTCTCAGGAAACTTTGAATGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25302</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>62670</contig_pos>
        <strand>+</strand>
        <context>GTCTTCGATT[C/T]CTAGAACCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTGAATGTACGTTATTTTTTAAAATTCCAATGTTTTCAGTCTTCGATT</left_flank>
        <right_flank>CTAGAACCTTCTTGAAGGTTCCAAAAAACTCAATTTCCCTTTTTTTACGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTTCCAATTCTGAGAAATCTGGCTCCTTAAATGTTTATCTTGCTATCTTCTAATTTCACCGACTCACCCCCCACGTTCCTCACAATCAGTAGACAAACAGTAAGCGGAGGTCCAGTTGTGGGCGGAGCCAAGGGGCAATTTATAAAAATAGGGGCCTAATTCTTATTTGGTAACTATTTTTTTCGTATTTTTCTAAATTTTCAAAATGGAGTCTTCCAATTTTCCATCAGTTTGAACATTCTTCAAAAAATTGGATTTCAAAAATCTTGCGTTTTTTCTCCAATTTCCATTTCCCTATCTCTTGTTAACAATTCTCTGGAGTCTAGTGAGCCGATATTATCAGAGATTATCAAAAATGCTCCAGATTTTGATTGGTTTTGCACATTCCAATGGCTGATGATGATCTGTCTTTTATGATTTTTCTTCCGAAATCCGATTCTCAGGAAACTTTGAATGTACGTTATTTTTTAAAATTCCAATGTTTTCAGTCTTCGATTTCTAGAACCTTCTTGAAGGTTCCAAAAAACTCAATTTCCCTTTTTTTACGGCTTTTTTCAAAAGACCCAAAAAAAATTTAATGTTTTCCATCTTTAATTGTACTTTGGATTTTGGCGGCAACTCAAAAAACTTTTAATTTGATCTAGGGATTTCCATGAAAATTTTTTTTCGGTTTTCCGAAATTTCGAAAACTTTTTAGAGACCCAAAAATATGATGAAAATGAAAAGGATTACTGTAGAGAAAAACATTAGAAAATCCAAAAAAATTACTGTAGGAAAGAATTAATTGAAAATCAAAAGGATTACTGTAAGGAGAAAAAAATTCGTGAATGAGAAGGGTTACTGTAGAAAACATTTGAAATTTAAAAGGATTACTGTAGAAAAAATGTTTGAAAACTGAAAGGATTACTGTACGGACAAAATATTGGAAAAATAGAAGCATTACTGTAGTGAAAGAGTATTTGAAAATCAAAAGGATTACTGTAAGGATAACATATTCA</canonical>
            <polymorphic>ATCTTCCAATTCTGAGAAATCTGGCTCCTTAAATGTTTATCTTGCTATCTTCTAATTTCACCGACTCACCCCCCACGTTCCTCACAATCAGTAGACAAACAGTAAGCGGAGGTCCAGTTGTGGGCGGAGCCAAGGGGCAATTTATAAAAATAGGGGCCTAATTCTTATTTGGTAACTATTTTTTTCGTATTTTTCTAAATTTTCAAAATGGAGTCTTCCAATTTTCCATCAGTTTGAACATTCTTCAAAAAATTGGATTTCAAAAATCTTGCGTTTTTTCTCCAATTTCCATTTCCCTATCTCTTGTTAACAATTCTCTGGAGTCTAGTGAGCCGATATTATCAGAGATTATCAAAAATGCTCCAGATTTTGATTGGTTTTGCACATTCCAATGGCTGATGATGATCTGTCTTTTATGATTTTTCTTCCGAAATCCGATTCTCAGGAAACTTTGAATGTACGTTATTTTTTAAAATTCCAATGTTTTCAGTCTTCGATTYCTAGAACCTTCTTGAAGGTTCCAAAAAACTCAATTTCCCTTTTTTTACGGCTTTTTTCAAAAGACCCAAAAAAAATTTAATGTTTTCCATCTTTAATTGTACTTTGGATTTTGGCGGCAACTCAAAAAACTTTTAATTTGATCTAGGGATTTCCATGAAAATTTTTTTTCGGTTTTCCGAAATTTCGAAAACTTTTTAGAGACCCAAAAATATGATGAAAATGAAAAGGATTACTGTAGAGAAAAACATTAGAAAATCCAAAAAAATTACTGTAGGAAAGAATTAATTGAAAATCAAAAGGATTACTGTAAGGAGAAAAAAATTCGTGAATGAGAAGGGTTACTGTAGAAAACATTTGAAATTTAAAAGGATTACTGTAGAAAAAATGTTTGAAAACTGAAAGGATTACTGTACGGACAAAATATTGGAAAAATAGAAGCATTACTGTAGTGAAAGAGTATTTGAAAATCAAAAGGATTACTGTAAGGATAACATATTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>318 314 175 80 58 45 10</canonical_bands>
                <polymorphic_bands>318 314 175 80 68 45</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTATGATTTTTCTTCCGAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATGGAAATCCCTAGATCAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTTATGATTTTTCTTCCGAAATCCGATTCTCAGGAAACTTTGAATGTACGTTATTTTTTAAAATTCCAATGTTTTCAGTCTTCGATTTCTAGAACCTTCTTGAAGGTTCCAAAAAACTCAATTTCCCTTTTTTTACGGCTTTTTTCAAAAGACCCAAAAAAAATTTAATGTTTTCCATCTTTAATTGTACTTTGGATTTTGGCGGCAACTCAAAAAACTTTTAATTTGATCTAGGGATTTCCAT</canonical_amplicon>
		<polymorphic_amplicon>TTTTATGATTTTTCTTCCGAAATCCGATTCTCAGGAAACTTTGAATGTACGTTATTTTTTAAAATTCCAATGTTTTCAGTCTTCGATTYCTAGAACCTTCTTGAAGGTTCCAAAAAACTCAATTTCCCTTTTTTTACGGCTTTTTTCAAAAGACCCAAAAAAAATTTAATGTTTTCCATCTTTAATTGTACTTTGGATTTTGGCGGCAACTCAAAAAACTTTTAATTTGATCTAGGGATTTCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25303</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>62721</contig_pos>
        <strand></strand>
        <context>TTTTTTACGG[C/T]TTTTTTCAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAGAACCTTCTTGAAGGTTCCAAAAAACTCAATTTCCCTTTTTTTACGG</left_flank>
        <right_flank>TTTTTTCAAAAGACCCAAAAAAAATTTAATGTTTTCCATCTTTAATTGTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAATTTCACCGACTCACCCCCCACGTTCCTCACAATCAGTAGACAAACAGTAAGCGGAGGTCCAGTTGTGGGCGGAGCCAAGGGGCAATTTATAAAAATAGGGGCCTAATTCTTATTTGGTAACTATTTTTTTCGTATTTTTCTAAATTTTCAAAATGGAGTCTTCCAATTTTCCATCAGTTTGAACATTCTTCAAAAAATTGGATTTCAAAAATCTTGCGTTTTTTCTCCAATTTCCATTTCCCTATCTCTTGTTAACAATTCTCTGGAGTCTAGTGAGCCGATATTATCAGAGATTATCAAAAATGCTCCAGATTTTGATTGGTTTTGCACATTCCAATGGCTGATGATGATCTGTCTTTTATGATTTTTCTTCCGAAATCCGATTCTCAGGAAACTTTGAATGTACGTTATTTTTTAAAATTCCAATGTTTTCAGTCTTCGATTTCTAGAACCTTCTTGAAGGTTCCAAAAAACTCAATTTCCCTTTTTTTACGGCTTTTTTCAAAAGACCCAAAAAAAATTTAATGTTTTCCATCTTTAATTGTACTTTGGATTTTGGCGGCAACTCAAAAAACTTTTAATTTGATCTAGGGATTTCCATGAAAATTTTTTTTCGGTTTTCCGAAATTTCGAAAACTTTTTAGAGACCCAAAAATATGATGAAAATGAAAAGGATTACTGTAGAGAAAAACATTAGAAAATCCAAAAAAATTACTGTAGGAAAGAATTAATTGAAAATCAAAAGGATTACTGTAAGGAGAAAAAAATTCGTGAATGAGAAGGGTTACTGTAGAAAACATTTGAAATTTAAAAGGATTACTGTAGAAAAAATGTTTGAAAACTGAAAGGATTACTGTACGGACAAAATATTGGAAAAATAGAAGCATTACTGTAGTGAAAGAGTATTTGAAAATCAAAAGGATTACTGTAAGGATAACATATTCAAAAAATTAAAAGGACTACTGTAGGGAAAGAATATTGGAAAATTAGAAGGAT</canonical>
            <polymorphic>CTAATTTCACCGACTCACCCCCCACGTTCCTCACAATCAGTAGACAAACAGTAAGCGGAGGTCCAGTTGTGGGCGGAGCCAAGGGGCAATTTATAAAAATAGGGGCCTAATTCTTATTTGGTAACTATTTTTTTCGTATTTTTCTAAATTTTCAAAATGGAGTCTTCCAATTTTCCATCAGTTTGAACATTCTTCAAAAAATTGGATTTCAAAAATCTTGCGTTTTTTCTCCAATTTCCATTTCCCTATCTCTTGTTAACAATTCTCTGGAGTCTAGTGAGCCGATATTATCAGAGATTATCAAAAATGCTCCAGATTTTGATTGGTTTTGCACATTCCAATGGCTGATGATGATCTGTCTTTTATGATTTTTCTTCCGAAATCCGATTCTCAGGAAACTTTGAATGTACGTTATTTTTTAAAATTCCAATGTTTTCAGTCTTCGATTTCTAGAACCTTCTTGAAGGTTCCAAAAAACTCAATTTCCCTTTTTTTACGGYTTTTTTCAAAAGACCCAAAAAAAATTTAATGTTTTCCATCTTTAATTGTACTTTGGATTTTGGCGGCAACTCAAAAAACTTTTAATTTGATCTAGGGATTTCCATGAAAATTTTTTTTCGGTTTTCCGAAATTTCGAAAACTTTTTAGAGACCCAAAAATATGATGAAAATGAAAAGGATTACTGTAGAGAAAAACATTAGAAAATCCAAAAAAATTACTGTAGGAAAGAATTAATTGAAAATCAAAAGGATTACTGTAAGGAGAAAAAAATTCGTGAATGAGAAGGGTTACTGTAGAAAACATTTGAAATTTAAAAGGATTACTGTAGAAAAAATGTTTGAAAACTGAAAGGATTACTGTACGGACAAAATATTGGAAAAATAGAAGCATTACTGTAGTGAAAGAGTATTTGAAAATCAAAAGGATTACTGTAAGGATAACATATTCAAAAAATTAAAAGGACTACTGTAGGGAAAGAATATTGGAAAATTAGAAGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>501 176 155 78 63 27</canonical_bands>
                <polymorphic_bands>656 176 78 63 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTATGATTTTTCTTCCGAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATGGAAATCCCTAGATCAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTTATGATTTTTCTTCCGAAATCCGATTCTCAGGAAACTTTGAATGTACGTTATTTTTTAAAATTCCAATGTTTTCAGTCTTCGATTTCTAGAACCTTCTTGAAGGTTCCAAAAAACTCAATTTCCCTTTTTTTACGGCTTTTTTCAAAAGACCCAAAAAAAATTTAATGTTTTCCATCTTTAATTGTACTTTGGATTTTGGCGGCAACTCAAAAAACTTTTAATTTGATCTAGGGATTTCCAT</canonical_amplicon>
		<polymorphic_amplicon>TTTTATGATTTTTCTTCCGAAATCCGATTCTCAGGAAACTTTGAATGTACGTTATTTTTTAAAATTCCAATGTTTTCAGTCTTCGATTTCTAGAACCTTCTTGAAGGTTCCAAAAAACTCAATTTCCCTTTTTTTACGGYTTTTTTCAAAAGACCCAAAAAAAATTTAATGTTTTCCATCTTTAATTGTACTTTGGATTTTGGCGGCAACTCAAAAAACTTTTAATTTGATCTAGGGATTTCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25304</snp_id>
        <super_contig>c001200954.Contig3</super_contig>
        <contig_pos>62915</contig_pos>
        <strand></strand>
        <context>tgtagagaaa[A/T]acattagaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTAGAGACCCAAAAATATGATGAAAATGAAAAGGATTACTGTAGAGAAA</left_flank>
        <right_flank>ACATTAGAAAATCCAAAAAAATTACTGTAGGAAAGAATTAATTGAAAATC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAAATTGGATTTCAAAAATCTTGCGTTTTTTCTCCAATTTCCATTTCCCTATCTCTTGTTAACAATTCTCTGGAGTCTAGTGAGCCGATATTATCAGAGATTATCAAAAATGCTCCAGATTTTGATTGGTTTTGCACATTCCAATGGCTGATGATGATCTGTCTTTTATGATTTTTCTTCCGAAATCCGATTCTCAGGAAACTTTGAATGTACGTTATTTTTTAAAATTCCAATGTTTTCAGTCTTCGATTTCTAGAACCTTCTTGAAGGTTCCAAAAAACTCAATTTCCCTTTTTTTACGGCTTTTTTCAAAAGACCCAAAAAAAATTTAATGTTTTCCATCTTTAATTGTACTTTGGATTTTGGCGGCAACTCAAAAAACTTTTAATTTGATCTAGGGATTTCCATGAAAATTTTTTTTCGGTTTTCCGAAATTTCGAAAACTTTTTAGAGACCCAAAAATATGATGAAAATGAAAAGGATTACTGTAGAGAAAAACATTAGAAAATCCAAAAAAATTACTGTAGGAAAGAATTAATTGAAAATCAAAAGGATTACTGTAAGGAGAAAAAAATTCGTGAATGAGAAGGGTTACTGTAGAAAACATTTGAAATTTAAAAGGATTACTGTAGAAAAAATGTTTGAAAACTGAAAGGATTACTGTACGGACAAAATATTGGAAAAATAGAAGCATTACTGTAGTGAAAGAGTATTTGAAAATCAAAAGGATTACTGTAAGGATAACATATTCAAAAAATTAAAAGGACTACTGTAGGGAAAGAATATTGGAAAATTAGAAGGATTACTGTAGTGAAAGAGCATTTGATAATTAAAATGATTACTGTAGGGGAAAAATATTGGGAAATGAAAAGGATTACTGTAGAGAAAAACATTAGAAAATCCAAAAGATTACTGTTGGAAAGAATTATTGAAAATCAAAAGCATTGCTGTAAGGAAAAAATAATTTCTGAACGAGAAGGGTTACTGTAGAAGAATC</canonical>
            <polymorphic>CAAAAAATTGGATTTCAAAAATCTTGCGTTTTTTCTCCAATTTCCATTTCCCTATCTCTTGTTAACAATTCTCTGGAGTCTAGTGAGCCGATATTATCAGAGATTATCAAAAATGCTCCAGATTTTGATTGGTTTTGCACATTCCAATGGCTGATGATGATCTGTCTTTTATGATTTTTCTTCCGAAATCCGATTCTCAGGAAACTTTGAATGTACGTTATTTTTTAAAATTCCAATGTTTTCAGTCTTCGATTTCTAGAACCTTCTTGAAGGTTCCAAAAAACTCAATTTCCCTTTTTTTACGGCTTTTTTCAAAAGACCCAAAAAAAATTTAATGTTTTCCATCTTTAATTGTACTTTGGATTTTGGCGGCAACTCAAAAAACTTTTAATTTGATCTAGGGATTTCCATGAAAATTTTTTTTCGGTTTTCCGAAATTTCGAAAACTTTTTAGAGACCCAAAAATATGATGAAAATGAAAAGGATTACTGTAGAGAAAWACATTAGAAAATCCAAAAAAATTACTGTAGGAAAGAATTAATTGAAAATCAAAAGGATTACTGTAAGGAGAAAAAAATTCGTGAATGAGAAGGGTTACTGTAGAAAACATTTGAAATTTAAAAGGATTACTGTAGAAAAAATGTTTGAAAACTGAAAGGATTACTGTACGGACAAAATATTGGAAAAATAGAAGCATTACTGTAGTGAAAGAGTATTTGAAAATCAAAAGGATTACTGTAAGGATAACATATTCAAAAAATTAAAAGGACTACTGTAGGGAAAGAATATTGGAAAATTAGAAGGATTACTGTAGTGAAAGAGCATTTGATAATTAAAATGATTACTGTAGGGGAAAAATATTGGGAAATGAAAAGGATTACTGTAGAGAAAAACATTAGAAAATCCAAAAGATTACTGTTGGAAAGAATTATTGAAAATCAAAAGCATTGCTGTAAGGAAAAAATAATTTCTGAACGAGAAGGGTTACTGTAGAAGAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTAATTTGATCTAGGGATTTC</pcr_primer_p1>
		<pcr_primer_p2>ATCAAGTTTTGGAATTTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>845</pcr_amplicon_size>
		<canonical_amplicon>CTTTTAATTTGATCTAGGGATTTCCATGAAAATTTTTTTTCGGTTTTCCGAAATTTCGAAAACTTTTTAGAGACCCAAAAATATGATGAAAATGAAAAGGATTACTGTAGAGAAAAACATTAGAAAATCCAAAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CTTTTAATTTGATCTAGGGATTTCCATGAAAATTTTTTTTCGGTTTTCCGAAATTTCGAAAACTTTTTAGAGACCCAAAAATATGATGAAAATGAAAAGGATTACTGTAGAGAAAWACATTAGAAAATCCAAAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25305</snp_id>
        <super_contig>c001201154.Contig1</super_contig>
        <contig_pos>36091</contig_pos>
        <strand>+</strand>
        <context>CGTTTATTTT[A/G]CAGGTCCAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGAAGGTTGTTTATTTCTCGGTCTTTTTTTTCAAATTTCGTTTATTTT</left_flank>
        <right_flank>CAGGTCCAAGTCTTCACAGGCGTTTGCAGCGATAATCGTTGCAATCCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTAAATCAAGACTATGGGCTTCAGTTACATTAGACATGCAGGATTATCTTGTGAAACCAGAACCACATTCGTTGGTTGTGTTTAGAGTTGGAGAGTTTTCATTGAATTCTTTCCCGGATTTAGTGACAATTGTACAGGGAACCAGGGTAAGAATAGGGACAGAGTTCTTCTAAAAATTCTATTTTTTTTTGTAGACCAACAATCGCCCAGCAATCAAAGTAATAGAAAACGAGGAATGTAAGAATTGTGAAAAGAACGGGACTCGTCGATTCGATATCCGGAAAGGAGAATTCATTCAACCCAAAAACATGGCGTTGGGAATTATTAAAATGGGAACATTTTTTGATTTATTAGAAGATGGATCACTCGATTTATTGGTTGAATATGATTTGGGAAATGAGACACGATTTGGATTTGTGTATTGTCCTGATAAGGGAGATACTACGTTTTTGAAGGTTGTTTATTTCTCGGTCTTTTTTTTCAAATTTCGTTTATTTTCCAGGTCCAAGTCTTCACAGGCGTTTGCAGCGATAATCGTTGCAATCCAAAATCGAATGAAATTGGTTCAAGTATCTCAATGACTGGTGCCTGTGCATCATTCTCGATGACCGATGGATGGGGTGGAAGTACTCAAAGTGTTGCATGTCAAGTTCCAGCTTCTTCAAATCGAGCACTTTATCTACCATTCTTGCTTTACGGTCTTGGAAGAAGTCCCAATTTTGTTGATGAGGTAAGCTAAAAAGTGAATATTTCAAAAATTCACAATGCTTTCAGCTCAACATCGCTATTCCGAAATACGCGGATCGCAAAGAGGACTGGAAGCACAGTTTGAAACAAATCGTTCCGAATTCCCGTATCATTGTTCTGCCACCGTCTCCTGAGTATCCACACTGGACTAGTCGGCTCTATGTTACACCATCAGCACTTATTGTACAGGTTAGTTTTGAAAAGAAAATGATGAAAACCTCAAAACTCCCATGCATAAATTTCACTCTCAGC</canonical>
            <polymorphic>TGTAAATCAAGACTATGGGCTTCAGTTACATTAGACATGCAGGATTATCTTGTGAAACCAGAACCACATTCGTTGGTTGTGTTTAGAGTTGGAGAGTTTTCATTGAATTCTTTCCCGGATTTAGTGACAATTGTACAGGGAACCAGGGTAAGAATAGGGACAGAGTTCTTCTAAAAATTCTATTTTTTTTTGTAGACCAACAATCGCCCAGCAATCAAAGTAATAGAAAACGAGGAATGTAAGAATTGTGAAAAGAACGGGACTCGTCGATTCGATATCCGGAAAGGAGAATTCATTCAACCCAAAAACATGGCGTTGGGAATTATTAAAATGGGAACATTTTTTGATTTATTAGAAGATGGATCACTCGATTTATTGGTTGAATATGATTTGGGAAATGAGACACGATTTGGATTTGTGTATTGTCCTGATAAGGGAGATACTACGTTTTTGAAGGTTGTTTATTTCTCGGTCTTTTTTTTCAAATTTCGTTTATTTTRCAGGTCCAAGTCTTCACAGGCGTTTGCAGCGATAATCGTTGCAATCCAAAATCGAATGAAATTGGTTCAAGTATCTCAATGACTGGTGCCTGTGCATCATTCTCGATGACCGATGGATGGGGTGGAAGTACTCAAAGTGTTGCATGTCAAGTTCCAGCTTCTTCAAATCGAGCACTTTATCTACCATTCTTGCTTTACGGTCTTGGAAGAAGTCCCAATTTTGTTGATGAGGTAAGCTAAAAAGTGAATATTTCAAAAATTCACAATGCTTTCAGCTCAACATCGCTATTCCGAAATACGCGGATCGCAAAGAGGACTGGAAGCACAGTTTGAAACAAATCGTTCCGAATTCCCGTATCATTGTTCTGCCACCGTCTCCTGAGTATCCACACTGGACTAGTCGGCTCTATGTTACACCATCAGCACTTATTGTACAGGTTAGTTTTGAAAAGAAAATGATGAAAACCTCAAAACTCCCATGCATAAATTTCACTCTCAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>499 357 115 29</canonical_bands>
                <polymorphic_bands>856 115 29</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>499 357 144</canonical_bands>
                <polymorphic_bands>856 144</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAGATACTACGTTTTTGAAGGT</pcr_primer_p1>
		<pcr_primer_p2>GTAGATAAAGTGCTCGATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGAGATACTACGTTTTTGAAGGTTGTTTATTTCTCGGTCTTTTTTTTCAAATTTCGTTTATTTTCCAGGTCCAAGTCTTCACAGGCGTTTGCAGCGATAATCGTTGCAATCCAAAATCGAATGAAATTGGTTCAAGTATCTCAATGACTGGTGCCTGTGCATCATTCTCGATGACCGATGGATGGGGTGGAAGTACTCAAAGTGTTGCATGTCAAGTTCCAGCTTCTTCAAATCGAGCACTTTATCTAC</canonical_amplicon>
		<polymorphic_amplicon>GGAGATACTACGTTTTTGAAGGTTGTTTATTTCTCGGTCTTTTTTTTCAAATTTCGTTTATTTTRCAGGTCCAAGTCTTCACAGGCGTTTGCAGCGATAATCGTTGCAATCCAAAATCGAATGAAATTGGTTCAAGTATCTCAATGACTGGTGCCTGTGCATCATTCTCGATGACCGATGGATGGGGTGGAAGTACTCAAAGTGTTGCATGTCAAGTTCCAGCTTCTTCAAATCGAGCACTTTATCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25306</snp_id>
        <super_contig>c001201229.Contig1</super_contig>
        <contig_pos>88816</contig_pos>
        <strand>+</strand>
        <context>GCTGTGATTT[A/G]TTCATTGTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGATGAAGAGAGGAAGAAAAAAGTGAGTGAGATTGTTCGGCTGTGATTT</left_flank>
        <right_flank>TTCATTGTTTATATTCTTTCAGAAGAAATGTACTTCTCCAAACGGACCGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTCAAGTTGATTTTTTTCATGTTAGTTATTCATCAATGAATGTTACAGAACCACCACCATCATATTCTCGTGAAGATCCTTACCGGAGTAGTAGCCGGGTGTCAAACTCTCGTAGACGACACCGGTCTGGAAGCTCATCGGACGAAAAAGAACAGTCCCAACGGAGTTCCAGTAGAAGGCATCATCGCAGGACAGATTCGAGTAATCGATCTATGGATAACGGAGATGATAAAGGTGTTGTGAAAGAAACGACGGTGATCAAACTGGAAAAGCGCAGTATCAAATATGGATCAGGAGAAATGTATGAGCAGGTTCACATCAGGAAAAGAACGGCCGTGATACGAGGAAAAGAACAACAATTGGAAGATATATCTTCAGACGAAAATAATTCGGCTTCTGTTTCCGGTTCTACAAGTACCAGCACCACTGCAACCTACCCAGACCTCTCTGATGAAGAGAGGAAGAAAAAAGTGAGTGAGATTGTTCGGCTGTGATTTGTTCATTGTTTATATTCTTTCAGAAGAAATGTACTTCTCCAAACGGACCGGCTAAAGGAGCTAAAGCATTTGGGTGGTCTGACATTGATGAATCTGATGATGACAATAGAATTCGAAGAGGTGGAAGATCGAAGAAAAATGAATCGGAACGGAAGTCTCGCCTACTGACGTCGTCATCTTCGAAACGAGACATTTCGAATTCGCAGGCTAGTAGTACCCCGAATCTAAAATCTTCAAGAACTCCTCCACCTCCTCCGCCATCAAGAGGGCACCCGCTACATCCAATGCAGCATCCAAATGCTTATCCGGTCCATCATCCACATCATATACCACCGCCACCGCACATGATGCCTTTCTACCCGATGCCTCCACATCATCTACCTCATGGACCGCCTGTCCCAATGATGATCCCTCCAGCAATGAGTAATAAAGGAATAGCCAATTGCGATTTTCGTCAACCACCTCCCGGATTTATTTCATCATTCACAACATCGTATCCTC</canonical>
            <polymorphic>ACTTCAAGTTGATTTTTTTCATGTTAGTTATTCATCAATGAATGTTACAGAACCACCACCATCATATTCTCGTGAAGATCCTTACCGGAGTAGTAGCCGGGTGTCAAACTCTCGTAGACGACACCGGTCTGGAAGCTCATCGGACGAAAAAGAACAGTCCCAACGGAGTTCCAGTAGAAGGCATCATCGCAGGACAGATTCGAGTAATCGATCTATGGATAACGGAGATGATAAAGGTGTTGTGAAAGAAACGACGGTGATCAAACTGGAAAAGCGCAGTATCAAATATGGATCAGGAGAAATGTATGAGCAGGTTCACATCAGGAAAAGAACGGCCGTGATACGAGGAAAAGAACAACAATTGGAAGATATATCTTCAGACGAAAATAATTCGGCTTCTGTTTCCGGTTCTACAAGTACCAGCACCACTGCAACCTACCCAGACCTCTCTGATGAAGAGAGGAAGAAAAAAGTGAGTGAGATTGTTCGGCTGTGATTTRTTCATTGTTTATATTCTTTCAGAAGAAATGTACTTCTCCAAACGGACCGGCTAAAGGAGCTAAAGCATTTGGGTGGTCTGACATTGATGAATCTGATGATGACAATAGAATTCGAAGAGGTGGAAGATCGAAGAAAAATGAATCGGAACGGAAGTCTCGCCTACTGACGTCGTCATCTTCGAAACGAGACATTTCGAATTCGCAGGCTAGTAGTACCCCGAATCTAAAATCTTCAAGAACTCCTCCACCTCCTCCGCCATCAAGAGGGCACCCGCTACATCCAATGCAGCATCCAAATGCTTATCCGGTCCATCATCCACATCATATACCACCGCCACCGCACATGATGCCTTTCTACCCGATGCCTCCACATCATCTACCTCATGGACCGCCTGTCCCAATGATGATCCCTCCAGCAATGAGTAATAAAGGAATAGCCAATTGCGATTTTCGTCAACCACCTCCCGGATTTATTTCATCATTCACAACATCGTATCCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAACAACAATTGGAAGATA</pcr_primer_p1>
		<pcr_primer_p2>CATCAGATTCATCAATGTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAACAACAATTGGAAGATATATCTTCAGACGAAAATAATTCGGCTTCTGTTTCCGGTTCTACAAGTACCAGCACCACTGCAACCTACCCAGACCTCTCTGATGAAGAGAGGAAGAAAAAAGTGAGTGAGATTGTTCGGCTGTGATTTGTTCATTGTTTATATTCTTTCAGAAGAAATGTACTTCTCCAAACGGACCGGCTAAAGGAGCTAAAGCATTTGGGTGGTCTGACATTGATGAATCTGATG</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAACAACAATTGGAAGATATATCTTCAGACGAAAATAATTCGGCTTCTGTTTCCGGTTCTACAAGTACCAGCACCACTGCAACCTACCCAGACCTCTCTGATGAAGAGAGGAAGAAAAAAGTGAGTGAGATTGTTCGGCTGTGATTTRTTCATTGTTTATATTCTTTCAGAAGAAATGTACTTCTCCAAACGGACCGGCTAAAGGAGCTAAAGCATTTGGGTGGTCTGACATTGATGAATCTGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25307</snp_id>
        <super_contig>c001201229.Contig1</super_contig>
        <contig_pos>88978</contig_pos>
        <strand>+</strand>
        <context>AAGTCTCGCC[A/T]ACTGACGTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGAAGAGGTGGAAGATCGAAGAAAAATGAATCGGAACGGAAGTCTCGCC</left_flank>
        <right_flank>ACTGACGTCGTCATCTTCGAAACGAGACATTTCGAATTCGCAGGCTAGTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGGAGTTCCAGTAGAAGGCATCATCGCAGGACAGATTCGAGTAATCGATCTATGGATAACGGAGATGATAAAGGTGTTGTGAAAGAAACGACGGTGATCAAACTGGAAAAGCGCAGTATCAAATATGGATCAGGAGAAATGTATGAGCAGGTTCACATCAGGAAAAGAACGGCCGTGATACGAGGAAAAGAACAACAATTGGAAGATATATCTTCAGACGAAAATAATTCGGCTTCTGTTTCCGGTTCTACAAGTACCAGCACCACTGCAACCTACCCAGACCTCTCTGATGAAGAGAGGAAGAAAAAAGTGAGTGAGATTGTTCGGCTGTGATTTGTTCATTGTTTATATTCTTTCAGAAGAAATGTACTTCTCCAAACGGACCGGCTAAAGGAGCTAAAGCATTTGGGTGGTCTGACATTGATGAATCTGATGATGACAATAGAATTCGAAGAGGTGGAAGATCGAAGAAAAATGAATCGGAACGGAAGTCTCGCCTACTGACGTCGTCATCTTCGAAACGAGACATTTCGAATTCGCAGGCTAGTAGTACCCCGAATCTAAAATCTTCAAGAACTCCTCCACCTCCTCCGCCATCAAGAGGGCACCCGCTACATCCAATGCAGCATCCAAATGCTTATCCGGTCCATCATCCACATCATATACCACCGCCACCGCACATGATGCCTTTCTACCCGATGCCTCCACATCATCTACCTCATGGACCGCCTGTCCCAATGATGATCCCTCCAGCAATGAGTAATAAAGGAATAGCCAATTGCGATTTTCGTCAACCACCTCCCGGATTTATTTCATCATTCACAACATCGTATCCTCCGGTTCCTAATATTCCACCTCCTTCCGCAATACCGGTCCGATATCAAGCTCCACATCTTCCCCAACCTGGATTGGTCCATATTACCTCTTTGTCGGCAATTCCAGACGCCGCTGAGGGCGTTCCAGGACCTCCATCCTTGCGTCCTTCCCAAAGAACTGATA</canonical>
            <polymorphic>ACGGAGTTCCAGTAGAAGGCATCATCGCAGGACAGATTCGAGTAATCGATCTATGGATAACGGAGATGATAAAGGTGTTGTGAAAGAAACGACGGTGATCAAACTGGAAAAGCGCAGTATCAAATATGGATCAGGAGAAATGTATGAGCAGGTTCACATCAGGAAAAGAACGGCCGTGATACGAGGAAAAGAACAACAATTGGAAGATATATCTTCAGACGAAAATAATTCGGCTTCTGTTTCCGGTTCTACAAGTACCAGCACCACTGCAACCTACCCAGACCTCTCTGATGAAGAGAGGAAGAAAAAAGTGAGTGAGATTGTTCGGCTGTGATTTGTTCATTGTTTATATTCTTTCAGAAGAAATGTACTTCTCCAAACGGACCGGCTAAAGGAGCTAAAGCATTTGGGTGGTCTGACATTGATGAATCTGATGATGACAATAGAATTCGAAGAGGTGGAAGATCGAAGAAAAATGAATCGGAACGGAAGTCTCGCCWACTGACGTCGTCATCTTCGAAACGAGACATTTCGAATTCGCAGGCTAGTAGTACCCCGAATCTAAAATCTTCAAGAACTCCTCCACCTCCTCCGCCATCAAGAGGGCACCCGCTACATCCAATGCAGCATCCAAATGCTTATCCGGTCCATCATCCACATCATATACCACCGCCACCGCACATGATGCCTTTCTACCCGATGCCTCCACATCATCTACCTCATGGACCGCCTGTCCCAATGATGATCCCTCCAGCAATGAGTAATAAAGGAATAGCCAATTGCGATTTTCGTCAACCACCTCCCGGATTTATTTCATCATTCACAACATCGTATCCTCCGGTTCCTAATATTCCACCTCCTTCCGCAATACCGGTCCGATATCAAGCTCCACATCTTCCCCAACCTGGATTGGTCCATATTACCTCTTTGTCGGCAATTCCAGACGCCGCTGAGGGCGTTCCAGGACCTCCATCCTTGCGTCCTTCCCAAAGAACTGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATGAATCTGATGATGACAATA</pcr_primer_p1>
		<pcr_primer_p2>GTGGTATATGATGTGGATGATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGATGAATCTGATGATGACAATAGAATTCGAAGAGGTGGAAGATCGAAGAAAAATGAATCGGAACGGAAGTCTCGCCTACTGACGTCGTCATCTTCGAAACGAGACATTTCGAATTCGCAGGCTAGTAGTACCCCGAATCTAAAATCTTCAAGAACTCCTCCACCTCCTCCGCCATCAAGAGGGCACCCGCTACATCCAATGCAGCATCCAAATGCTTATCCGGTCCATCATCCACATCATATACCAC</canonical_amplicon>
		<polymorphic_amplicon>TGATGAATCTGATGATGACAATAGAATTCGAAGAGGTGGAAGATCGAAGAAAAATGAATCGGAACGGAAGTCTCGCCWACTGACGTCGTCATCTTCGAAACGAGACATTTCGAATTCGCAGGCTAGTAGTACCCCGAATCTAAAATCTTCAAGAACTCCTCCACCTCCTCCGCCATCAAGAGGGCACCCGCTACATCCAATGCAGCATCCAAATGCTTATCCGGTCCATCATCCACATCATATACCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25308</snp_id>
        <super_contig>c001201229.Contig1</super_contig>
        <contig_pos>89031</contig_pos>
        <strand>+</strand>
        <context>GGCTAGTAGT[A/G]CCCCGAATCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGACGTCGTCATCTTCGAAACGAGACATTTCGAATTCGCAGGCTAGTAGT</left_flank>
        <right_flank>CCCCGAATCTAAAATCTTCAAGAACTCCTCCACCTCCTCCGCCATCAAGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGATAACGGAGATGATAAAGGTGTTGTGAAAGAAACGACGGTGATCAAACTGGAAAAGCGCAGTATCAAATATGGATCAGGAGAAATGTATGAGCAGGTTCACATCAGGAAAAGAACGGCCGTGATACGAGGAAAAGAACAACAATTGGAAGATATATCTTCAGACGAAAATAATTCGGCTTCTGTTTCCGGTTCTACAAGTACCAGCACCACTGCAACCTACCCAGACCTCTCTGATGAAGAGAGGAAGAAAAAAGTGAGTGAGATTGTTCGGCTGTGATTTGTTCATTGTTTATATTCTTTCAGAAGAAATGTACTTCTCCAAACGGACCGGCTAAAGGAGCTAAAGCATTTGGGTGGTCTGACATTGATGAATCTGATGATGACAATAGAATTCGAAGAGGTGGAAGATCGAAGAAAAATGAATCGGAACGGAAGTCTCGCCTACTGACGTCGTCATCTTCGAAACGAGACATTTCGAATTCGCAGGCTAGTAGTACCCCGAATCTAAAATCTTCAAGAACTCCTCCACCTCCTCCGCCATCAAGAGGGCACCCGCTACATCCAATGCAGCATCCAAATGCTTATCCGGTCCATCATCCACATCATATACCACCGCCACCGCACATGATGCCTTTCTACCCGATGCCTCCACATCATCTACCTCATGGACCGCCTGTCCCAATGATGATCCCTCCAGCAATGAGTAATAAAGGAATAGCCAATTGCGATTTTCGTCAACCACCTCCCGGATTTATTTCATCATTCACAACATCGTATCCTCCGGTTCCTAATATTCCACCTCCTTCCGCAATACCGGTCCGATATCAAGCTCCACATCTTCCCCAACCTGGATTGGTCCATATTACCTCTTTGTCGGCAATTCCAGACGCCGCTGAGGGCGTTCCAGGACCTCCATCCTTGCGTCCTTCCCAAAGAACTGATAGTAGTCGTAATTCGGAGTCGCCCGAGGGGCATAATATCACTCTTCAACAAAGA</canonical>
            <polymorphic>TGGATAACGGAGATGATAAAGGTGTTGTGAAAGAAACGACGGTGATCAAACTGGAAAAGCGCAGTATCAAATATGGATCAGGAGAAATGTATGAGCAGGTTCACATCAGGAAAAGAACGGCCGTGATACGAGGAAAAGAACAACAATTGGAAGATATATCTTCAGACGAAAATAATTCGGCTTCTGTTTCCGGTTCTACAAGTACCAGCACCACTGCAACCTACCCAGACCTCTCTGATGAAGAGAGGAAGAAAAAAGTGAGTGAGATTGTTCGGCTGTGATTTGTTCATTGTTTATATTCTTTCAGAAGAAATGTACTTCTCCAAACGGACCGGCTAAAGGAGCTAAAGCATTTGGGTGGTCTGACATTGATGAATCTGATGATGACAATAGAATTCGAAGAGGTGGAAGATCGAAGAAAAATGAATCGGAACGGAAGTCTCGCCTACTGACGTCGTCATCTTCGAAACGAGACATTTCGAATTCGCAGGCTAGTAGTRCCCCGAATCTAAAATCTTCAAGAACTCCTCCACCTCCTCCGCCATCAAGAGGGCACCCGCTACATCCAATGCAGCATCCAAATGCTTATCCGGTCCATCATCCACATCATATACCACCGCCACCGCACATGATGCCTTTCTACCCGATGCCTCCACATCATCTACCTCATGGACCGCCTGTCCCAATGATGATCCCTCCAGCAATGAGTAATAAAGGAATAGCCAATTGCGATTTTCGTCAACCACCTCCCGGATTTATTTCATCATTCACAACATCGTATCCTCCGGTTCCTAATATTCCACCTCCTTCCGCAATACCGGTCCGATATCAAGCTCCACATCTTCCCCAACCTGGATTGGTCCATATTACCTCTTTGTCGGCAATTCCAGACGCCGCTGAGGGCGTTCCAGGACCTCCATCCTTGCGTCCTTCCCAAAGAACTGATAGTAGTCGTAATTCGGAGTCGCCCGAGGGGCATAATATCACTCTTCAACAAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 203 183 113</canonical_bands>
                <polymorphic_bands>684 203 113</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATGAATCTGATGATGACAATA</pcr_primer_p1>
		<pcr_primer_p2>GTGGTATATGATGTGGATGATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGATGAATCTGATGATGACAATAGAATTCGAAGAGGTGGAAGATCGAAGAAAAATGAATCGGAACGGAAGTCTCGCCTACTGACGTCGTCATCTTCGAAACGAGACATTTCGAATTCGCAGGCTAGTAGTACCCCGAATCTAAAATCTTCAAGAACTCCTCCACCTCCTCCGCCATCAAGAGGGCACCCGCTACATCCAATGCAGCATCCAAATGCTTATCCGGTCCATCATCCACATCATATACCAC</canonical_amplicon>
		<polymorphic_amplicon>TGATGAATCTGATGATGACAATAGAATTCGAAGAGGTGGAAGATCGAAGAAAAATGAATCGGAACGGAAGTCTCGCCTACTGACGTCGTCATCTTCGAAACGAGACATTTCGAATTCGCAGGCTAGTAGTRCCCCGAATCTAAAATCTTCAAGAACTCCTCCACCTCCTCCGCCATCAAGAGGGCACCCGCTACATCCAATGCAGCATCCAAATGCTTATCCGGTCCATCATCCACATCATATACCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25309</snp_id>
        <super_contig>c001201229.Contig1</super_contig>
        <contig_pos>89170</contig_pos>
        <strand>+</strand>
        <context>ATGATGCCTT[A/T]CTACCCGATG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCGGTCCATCATCCACATCATATACCACCGCCACCGCACATGATGCCTT</left_flank>
        <right_flank>CTACCCGATGCCTCCACATCATCTACCTCATGGACCGCCTGTCCCAATGA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAACAATTGGAAGATATATCTTCAGACGAAAATAATTCGGCTTCTGTTTCCGGTTCTACAAGTACCAGCACCACTGCAACCTACCCAGACCTCTCTGATGAAGAGAGGAAGAAAAAAGTGAGTGAGATTGTTCGGCTGTGATTTGTTCATTGTTTATATTCTTTCAGAAGAAATGTACTTCTCCAAACGGACCGGCTAAAGGAGCTAAAGCATTTGGGTGGTCTGACATTGATGAATCTGATGATGACAATAGAATTCGAAGAGGTGGAAGATCGAAGAAAAATGAATCGGAACGGAAGTCTCGCCTACTGACGTCGTCATCTTCGAAACGAGACATTTCGAATTCGCAGGCTAGTAGTACCCCGAATCTAAAATCTTCAAGAACTCCTCCACCTCCTCCGCCATCAAGAGGGCACCCGCTACATCCAATGCAGCATCCAAATGCTTATCCGGTCCATCATCCACATCATATACCACCGCCACCGCACATGATGCCTTTCTACCCGATGCCTCCACATCATCTACCTCATGGACCGCCTGTCCCAATGATGATCCCTCCAGCAATGAGTAATAAAGGAATAGCCAATTGCGATTTTCGTCAACCACCTCCCGGATTTATTTCATCATTCACAACATCGTATCCTCCGGTTCCTAATATTCCACCTCCTTCCGCAATACCGGTCCGATATCAAGCTCCACATCTTCCCCAACCTGGATTGGTCCATATTACCTCTTTGTCGGCAATTCCAGACGCCGCTGAGGGCGTTCCAGGACCTCCATCCTTGCGTCCTTCCCAAAGAACTGATAGTAGTCGTAATTCGGAGTCGCCCGAGGGGCATAATATCACTCTTCAACAAAGATTCTCACAGTTATTCGGCGCAAAGAAGGAAGAACAAGCTCAGAGTTTTGAAGTTGAAAGAAGAGAGTATGCTCCCAGGAACTTTGAACCTCAAGATGATCGACATTCTTTGGAAGATATGGATGTTGAAGTTTCTAGTG</canonical>
            <polymorphic>ACAACAATTGGAAGATATATCTTCAGACGAAAATAATTCGGCTTCTGTTTCCGGTTCTACAAGTACCAGCACCACTGCAACCTACCCAGACCTCTCTGATGAAGAGAGGAAGAAAAAAGTGAGTGAGATTGTTCGGCTGTGATTTGTTCATTGTTTATATTCTTTCAGAAGAAATGTACTTCTCCAAACGGACCGGCTAAAGGAGCTAAAGCATTTGGGTGGTCTGACATTGATGAATCTGATGATGACAATAGAATTCGAAGAGGTGGAAGATCGAAGAAAAATGAATCGGAACGGAAGTCTCGCCTACTGACGTCGTCATCTTCGAAACGAGACATTTCGAATTCGCAGGCTAGTAGTACCCCGAATCTAAAATCTTCAAGAACTCCTCCACCTCCTCCGCCATCAAGAGGGCACCCGCTACATCCAATGCAGCATCCAAATGCTTATCCGGTCCATCATCCACATCATATACCACCGCCACCGCACATGATGCCTTWCTACCCGATGCCTCCACATCATCTACCTCATGGACCGCCTGTCCCAATGATGATCCCTCCAGCAATGAGTAATAAAGGAATAGCCAATTGCGATTTTCGTCAACCACCTCCCGGATTTATTTCATCATTCACAACATCGTATCCTCCGGTTCCTAATATTCCACCTCCTTCCGCAATACCGGTCCGATATCAAGCTCCACATCTTCCCCAACCTGGATTGGTCCATATTACCTCTTTGTCGGCAATTCCAGACGCCGCTGAGGGCGTTCCAGGACCTCCATCCTTGCGTCCTTCCCAAAGAACTGATAGTAGTCGTAATTCGGAGTCGCCCGAGGGGCATAATATCACTCTTCAACAAAGATTCTCACAGTTATTCGGCGCAAAGAAGGAAGAACAAGCTCAGAGTTTTGAAGTTGAAAGAAGAGAGTATGCTCCCAGGAACTTTGAACCTCAAGATGATCGACATTCTTTGGAAGATATGGATGTTGAAGTTTCTAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATCTAAAATCTTCAAGAACTC</pcr_primer_p1>
		<pcr_primer_p2>GCAATTGGCTATTCCTTTATTA</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>CGAATCTAAAATCTTCAAGAACTCCTCCACCTCCTCCGCCATCAAGAGGGCACCCGCTACATCCAATGCAGCATCCAAATGCTTATCCGGTCCATCATCCACATCATATACCACCGCCACCGCACATGATGCCTTTCTACCCGATGCCTCCACATCATCTACCTCATGGACCGCCTGTCCCAATGATGATCCCTCCAGCAATGAGTAATAAAGGAATAGCCAATTGC</canonical_amplicon>
		<polymorphic_amplicon>CGAATCTAAAATCTTCAAGAACTCCTCCACCTCCTCCGCCATCAAGAGGGCACCCGCTACATCCAATGCAGCATCCAAATGCTTATCCGGTCCATCATCCACATCATATACCACCGCCACCGCACATGATGCCTTWCTACCCGATGCCTCCACATCATCTACCTCATGGACCGCCTGTCCCAATGATGATCCCTCCAGCAATGAGTAATAAAGGAATAGCCAATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25310</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>36118</contig_pos>
        <strand></strand>
        <context>CTCGAAACTT[C/T]ATCGAGWTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTACGGTATATATTATTTCCAGAAGAAACCTCCGCAGCTGCTCGAAACTT</left_flank>
        <right_flank>ATCGAGATCTCGTGGACTGCTGTCCATTTTTCATTGAGAAACTTGGATTT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTTGCCGGATTGGTTCAAAAGAGATGTTGTTGGTTTCTTGGATTTCAAATCAAGGTGAGTGAAATGTTTTGGATTTTGCAAATTTAAATTTTTTCGAAAAATGTTTGGAAAGTGATTTTTGAACCGAATTGTTCGACAAACTGAAAAAATGACAAAAATTCAAAAAATCGAAATTTAAGTTTTCAAAATTTAGGAATATGAACGAATTTTTTAAAAATCCTTATAAAAAATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTTAGCCTATATATCTCATTTACTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATACCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATATATTATTTCCAGAAGAAACCTCCGCAGCTGCTCGAAACTTCATCGAGATCTCGTGGACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTACAAAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGATAGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACATTAGTACCTAAAGGATTGGATATTGAGAAG</canonical>
            <polymorphic>CAATTTGCCGGATTGGTTCAAAAGAGATGTTGTTGGTTTCTTGGATTTCAAATCAAGGTGAGTGAAATGTTTTGGATTTTGCAAATTTAAATTTTTTCGAAAAATGTTTGGAAAGTGATTTTTGAACCGAATTGTTCGACAAACTGAAAAAATGACAAAAATTCAAAAAATCGAAATTTAAGTTTTCAAAATTTAGGAATATGAACGAATTTTTTAAAAATCCTTATAAAAAATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTTAGCCTATATATCTCATTTACTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATACCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATATATTATTTCCAGAAGAAACCTCCGCAGCTGCTCGAAACTTYATCGAGATCTCGTGGACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTACAAAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGATAGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACATTAGTACCTAAAGGATTGGATATTGAGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTAGGAATATGAACGAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGAAAAATCCAAGTTTCTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>365</pcr_amplicon_size>
		<canonical_amplicon>ATTTAGGAATATGAACGAATTTTTTAAAAATCCTTATAAAAAATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTTAGCCTATATATCTCATTTACTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATACCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATATATTATTTCCAGAAGAAACCTCCGCAGCTGCTCGAAACTTCATCGAGATCTCGTGGACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTAGGAATATGAACGAATTTTTTAAAAATCCTTATAAAAAATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTTAGCCTATATATCTCATTTACTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATACCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATATATTATTTCCAGAAGAAACCTCCGCAGCTGCTCGAAACTTYATCGAGATCTCGTGGACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25311</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>36125</contig_pos>
        <strand></strand>
        <context>CTTYATCGAG[A/T]TCTCGTGGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATATATTATTTCCAGAAGAAACCTCCGCAGCTGCTCGAAACTTCATCGAG</left_flank>
        <right_flank>TCTCGTGGACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGGATTGGTTCAAAAGAGATGTTGTTGGTTTCTTGGATTTCAAATCAAGGTGAGTGAAATGTTTTGGATTTTGCAAATTTAAATTTTTTCGAAAAATGTTTGGAAAGTGATTTTTGAACCGAATTGTTCGACAAACTGAAAAAATGACAAAAATTCAAAAAATCGAAATTTAAGTTTTCAAAATTTAGGAATATGAACGAATTTTTTAAAAATCCTTATAAAAAATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTTAGCCTATATATCTCATTTACTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATACCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATATATTATTTCCAGAAGAAACCTCCGCAGCTGCTCGAAACTTCATCGAGATCTCGTGGACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTACAAAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGATAGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACATTAGTACCTAAAGGATTGGATATTGAGAAGTTTTCAC</canonical>
            <polymorphic>CCGGATTGGTTCAAAAGAGATGTTGTTGGTTTCTTGGATTTCAAATCAAGGTGAGTGAAATGTTTTGGATTTTGCAAATTTAAATTTTTTCGAAAAATGTTTGGAAAGTGATTTTTGAACCGAATTGTTCGACAAACTGAAAAAATGACAAAAATTCAAAAAATCGAAATTTAAGTTTTCAAAATTTAGGAATATGAACGAATTTTTTAAAAATCCTTATAAAAAATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTTAGCCTATATATCTCATTTACTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATACCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATATATTATTTCCAGAAGAAACCTCCGCAGCTGCTCGAAACTTCATCGAGWTCTCGTGGACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTACAAAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGATAGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACATTAGTACCTAAAGGATTGGATATTGAGAAGTTTTCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>502 258 157 83</canonical_bands>
                <polymorphic_bands>585 258 157</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>340 302 141 121 61 35</canonical_bands>
                <polymorphic_bands>340 302 141 121 96</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTAGGAATATGAACGAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>GGACAAGAAAAATCCAAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>369</pcr_amplicon_size>
		<canonical_amplicon>ATTTAGGAATATGAACGAATTTTTTAAAAATCCTTATAAAAAATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTTAGCCTATATATCTCATTTACTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATACCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATATATTATTTCCAGAAGAAACCTCCGCAGCTGCTCGAAACTTCATCGAGATCTCGTGGACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCC</canonical_amplicon>
		<polymorphic_amplicon>ATTTAGGAATATGAACGAATTTTTTAAAAATCCTTATAAAAAATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTTAGCCTATATATCTCATTTACTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATACCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATATATTATTTCCAGAAGAAACCTCCGCAGCTGCTCGAAACTTCATCGAGWTCTCGTGGACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25312</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>36212</contig_pos>
        <strand></strand>
        <context>TCCACGGACT[A/C]YARAACTATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACT</left_flank>
        <right_flank>CAAAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGAAAAATGTTTGGAAAGTGATTTTTGAACCGAATTGTTCGACAAACTGAAAAAATGACAAAAATTCAAAAAATCGAAATTTAAGTTTTCAAAATTTAGGAATATGAACGAATTTTTTAAAAATCCTTATAAAAAATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTTAGCCTATATATCTCATTTACTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATACCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATATATTATTTCCAGAAGAAACCTCCGCAGCTGCTCGAAACTTCATCGAGATCTCGTGGACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTACAAAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGATAGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACATTAGTACCTAAAGGATTGGATATTGAGAAGTTTTCACATGTCAAACGTCTGAAGATTAAAGTTGAAGATTCGGAATGGGATGTTCCGAAAATTCAAAATTTGATAATGGTGAGATCTCTACAGT</canonical>
            <polymorphic>TTTCGAAAAATGTTTGGAAAGTGATTTTTGAACCGAATTGTTCGACAAACTGAAAAAATGACAAAAATTCAAAAAATCGAAATTTAAGTTTTCAAAATTTAGGAATATGAACGAATTTTTTAAAAATCCTTATAAAAAATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTTAGCCTATATATCTCATTTACTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATACCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATATATTATTTCCAGAAGAAACCTCCGCAGCTGCTCGAAACTTCATCGAGATCTCGTGGACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTMCAAAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGATAGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACATTAGTACCTAAAGGATTGGATATTGAGAAGTTTTCACATGTCAAACGTCTGAAGATTAAAGTTGAAGATTCGGAATGGGATGTTCCGAAAATTCAAAATTTGATAATGGTGAGATCTCTACAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTGCTGTCCATTTTTCAT</pcr_primer_p1>
		<pcr_primer_p2>GTCGGAAAAGTCTACAGTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>207</pcr_amplicon_size>
		<canonical_amplicon>GACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTACAAAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGAC</canonical_amplicon>
		<polymorphic_amplicon>GACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTMCAAAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25313</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>36213</contig_pos>
        <strand></strand>
        <context>CCACGGACTM[C/T]ARAACTATCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTA</left_flank>
        <right_flank>AAAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGAAAAATGTTTGGAAAGTGATTTTTGAACCGAATTGTTCGACAAACTGAAAAAATGACAAAAATTCAAAAAATCGAAATTTAAGTTTTCAAAATTTAGGAATATGAACGAATTTTTTAAAAATCCTTATAAAAAATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTTAGCCTATATATCTCATTTACTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATACCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATATATTATTTCCAGAAGAAACCTCCGCAGCTGCTCGAAACTTCATCGAGATCTCGTGGACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTACAAAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGATAGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACATTAGTACCTAAAGGATTGGATATTGAGAAGTTTTCACATGTCAAACGTCTGAAGATTAAAGTTGAAGATTCGGAATGGGATGTTCCGAAAATTCAAAATTTGATAATGGTGAGATCTCTACAGTA</canonical>
            <polymorphic>TTCGAAAAATGTTTGGAAAGTGATTTTTGAACCGAATTGTTCGACAAACTGAAAAAATGACAAAAATTCAAAAAATCGAAATTTAAGTTTTCAAAATTTAGGAATATGAACGAATTTTTTAAAAATCCTTATAAAAAATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTTAGCCTATATATCTCATTTACTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATACCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATATATTATTTCCAGAAGAAACCTCCGCAGCTGCTCGAAACTTCATCGAGATCTCGTGGACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTAYAAAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGATAGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACATTAGTACCTAAAGGATTGGATATTGAGAAGTTTTCACATGTCAAACGTCTGAAGATTAAAGTTGAAGATTCGGAATGGGATGTTCCGAAAATTCAAAATTTGATAATGGTGAGATCTCTACAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTGCTGTCCATTTTTCAT</pcr_primer_p1>
		<pcr_primer_p2>GTCGGAAAAGTCTACAGTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>207</pcr_amplicon_size>
		<canonical_amplicon>GACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTACAAAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGAC</canonical_amplicon>
		<polymorphic_amplicon>GACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTAYAAAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25314</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>36215</contig_pos>
        <strand></strand>
        <context>ACGGACTMYA[A/G]AACTATCACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTACA</left_flank>
        <right_flank>AACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAAAAATGTTTGGAAAGTGATTTTTGAACCGAATTGTTCGACAAACTGAAAAAATGACAAAAATTCAAAAAATCGAAATTTAAGTTTTCAAAATTTAGGAATATGAACGAATTTTTTAAAAATCCTTATAAAAAATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTTAGCCTATATATCTCATTTACTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATACCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATATATTATTTCCAGAAGAAACCTCCGCAGCTGCTCGAAACTTCATCGAGATCTCGTGGACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTACAAAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGATAGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACATTAGTACCTAAAGGATTGGATATTGAGAAGTTTTCACATGTCAAACGTCTGAAGATTAAAGTTGAAGATTCGGAATGGGATGTTCCGAAAATTCAAAATTTGATAATGGTGAGATCTCTACAGTAAT</canonical>
            <polymorphic>CGAAAAATGTTTGGAAAGTGATTTTTGAACCGAATTGTTCGACAAACTGAAAAAATGACAAAAATTCAAAAAATCGAAATTTAAGTTTTCAAAATTTAGGAATATGAACGAATTTTTTAAAAATCCTTATAAAAAATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTTAGCCTATATATCTCATTTACTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATACCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATATATTATTTCCAGAAGAAACCTCCGCAGCTGCTCGAAACTTCATCGAGATCTCGTGGACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTACARAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGATAGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACATTAGTACCTAAAGGATTGGATATTGAGAAGTTTTCACATGTCAAACGTCTGAAGATTAAAGTTGAAGATTCGGAATGGGATGTTCCGAAAATTCAAAATTTGATAATGGTGAGATCTCTACAGTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTGCTGTCCATTTTTCAT</pcr_primer_p1>
		<pcr_primer_p2>GTCGGAAAAGTCTACAGTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>207</pcr_amplicon_size>
		<canonical_amplicon>GACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTACAAAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGAC</canonical_amplicon>
		<polymorphic_amplicon>GACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTACARAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25315</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>36354</contig_pos>
        <strand></strand>
        <context>AAAAGTCAAA[G/A]ATGGTGATTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAA</left_flank>
        <right_flank>ATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTTAGCCTATATATCTCATTTACTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATACCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATATATTATTTCCAGAAGAAACCTCCGCAGCTGCTCGAAACTTCATCGAGATCTCGTGGACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTACAAAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGATAGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACATTAGTACCTAAAGGATTGGATATTGAGAAGTTTTCACATGTCAAACGTCTGAAGATTAAAGTTGAAGATTCGGAATGGGATGTTCCGAAAATTCAAAATTTGATAATGGTGAGATCTCTACAGTAATGGACAAAACAACCTGTGAAAGAATTTTCTAGAATTTCAAACGACAAAATCATCCAGTCGGCTCTTTTTTCTCGATTCTTGTATATTTCCGTCCCAAAGGTTCAGAAAGAGAGGAAGAGGAAATTCCCACGCCAATCATT</canonical>
            <polymorphic>CCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTTAGCCTATATATCTCATTTACTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATACCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATATATTATTTCCAGAAGAAACCTCCGCAGCTGCTCGAAACTTCATCGAGATCTCGTGGACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTACAAAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAARATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGATAGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACATTAGTACCTAAAGGATTGGATATTGAGAAGTTTTCACATGTCAAACGTCTGAAGATTAAAGTTGAAGATTCGGAATGGGATGTTCCGAAAATTCAAAATTTGATAATGGTGAGATCTCTACAGTAATGGACAAAACAACCTGTGAAAGAATTTTCTAGAATTTCAAACGACAAAATCATCCAGTCGGCTCTTTTTTCTCGATTCTTGTATATTTCCGTCCCAAAGGTTCAGAAAGAGAGGAAGAGGAAATTCCCACGCCAATCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAAGTAATCCAAGATTTCCTA</pcr_primer_p1>
		<pcr_primer_p2>TTCGAATCTTATAGTTTCCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAA</canonical_amplicon>
		<polymorphic_amplicon>CTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAARATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25316</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>36373</contig_pos>
        <strand></strand>
        <context>TGATGAAATT[G/A]AGAAAATCRC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATT</left_flank>
        <right_flank>AGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGACACCCGGATCGTCCACTTTTAGCCTATATATCTCATTTACTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATACCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATATATTATTTCCAGAAGAAACCTCCGCAGCTGCTCGAAACTTCATCGAGATCTCGTGGACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTACAAAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGATAGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACATTAGTACCTAAAGGATTGGATATTGAGAAGTTTTCACATGTCAAACGTCTGAAGATTAAAGTTGAAGATTCGGAATGGGATGTTCCGAAAATTCAAAATTTGATAATGGTGAGATCTCTACAGTAATGGACAAAACAACCTGTGAAAGAATTTTCTAGAATTTCAAACGACAAAATCATCCAGTCGGCTCTTTTTTCTCGATTCTTGTATATTTCCGTCCCAAAGGTTCAGAAAGAGAGGAAGAGGAAATTCCCACGCCAATCATTGTTGATGAAGTGTAAGATT</canonical>
            <polymorphic>ACGACACCCGGATCGTCCACTTTTAGCCTATATATCTCATTTACTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATACCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATATATTATTTCCAGAAGAAACCTCCGCAGCTGCTCGAAACTTCATCGAGATCTCGTGGACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTACAAAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTRAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGATAGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACATTAGTACCTAAAGGATTGGATATTGAGAAGTTTTCACATGTCAAACGTCTGAAGATTAAAGTTGAAGATTCGGAATGGGATGTTCCGAAAATTCAAAATTTGATAATGGTGAGATCTCTACAGTAATGGACAAAACAACCTGTGAAAGAATTTTCTAGAATTTCAAACGACAAAATCATCCAGTCGGCTCTTTTTTCTCGATTCTTGTATATTTCCGTCCCAAAGGTTCAGAAAGAGAGGAAGAGGAAATTCCCACGCCAATCATTGTTGATGAAGTGTAAGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAAGTAATCCAAGATTTCCTA</pcr_primer_p1>
		<pcr_primer_p2>TTCGAATCTTATAGTTTCCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAA</canonical_amplicon>
		<polymorphic_amplicon>CTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTRAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25317</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>36382</contig_pos>
        <strand></strand>
        <context>TRAGAAAATC[G/A]CAAAGGAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATC</left_flank>
        <right_flank>CAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATCGTCCACTTTTAGCCTATATATCTCATTTACTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATACCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATATATTATTTCCAGAAGAAACCTCCGCAGCTGCTCGAAACTTCATCGAGATCTCGTGGACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTACAAAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGATAGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACATTAGTACCTAAAGGATTGGATATTGAGAAGTTTTCACATGTCAAACGTCTGAAGATTAAAGTTGAAGATTCGGAATGGGATGTTCCGAAAATTCAAAATTTGATAATGGTGAGATCTCTACAGTAATGGACAAAACAACCTGTGAAAGAATTTTCTAGAATTTCAAACGACAAAATCATCCAGTCGGCTCTTTTTTCTCGATTCTTGTATATTTCCGTCCCAAAGGTTCAGAAAGAGAGGAAGAGGAAATTCCCACGCCAATCATTGTTGATGAAGTGTAAGATTTTGAGATTT</canonical>
            <polymorphic>GGATCGTCCACTTTTAGCCTATATATCTCATTTACTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATACCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATATATTATTTCCAGAAGAAACCTCCGCAGCTGCTCGAAACTTCATCGAGATCTCGTGGACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTACAAAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATCRCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGATAGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACATTAGTACCTAAAGGATTGGATATTGAGAAGTTTTCACATGTCAAACGTCTGAAGATTAAAGTTGAAGATTCGGAATGGGATGTTCCGAAAATTCAAAATTTGATAATGGTGAGATCTCTACAGTAATGGACAAAACAACCTGTGAAAGAATTTTCTAGAATTTCAAACGACAAAATCATCCAGTCGGCTCTTTTTTCTCGATTCTTGTATATTTCCGTCCCAAAGGTTCAGAAAGAGAGGAAGAGGAAATTCCCACGCCAATCATTGTTGATGAAGTGTAAGATTTTGAGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAAGTAATCCAAGATTTCCTA</pcr_primer_p1>
		<pcr_primer_p2>TTCGAATCTTATAGTTTCCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAA</canonical_amplicon>
		<polymorphic_amplicon>CTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATCRCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25318</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>36403</contig_pos>
        <strand></strand>
        <context>TTTCAAAATT[A/C]GAGTGAAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATT</left_flank>
        <right_flank>GAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATATCTCATTTACTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATACCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATATATTATTTCCAGAAGAAACCTCCGCAGCTGCTCGAAACTTCATCGAGATCTCGTGGACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTACAAAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGATAGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACATTAGTACCTAAAGGATTGGATATTGAGAAGTTTTCACATGTCAAACGTCTGAAGATTAAAGTTGAAGATTCGGAATGGGATGTTCCGAAAATTCAAAATTTGATAATGGTGAGATCTCTACAGTAATGGACAAAACAACCTGTGAAAGAATTTTCTAGAATTTCAAACGACAAAATCATCCAGTCGGCTCTTTTTTCTCGATTCTTGTATATTTCCGTCCCAAAGGTTCAGAAAGAGAGGAAGAGGAAATTCCCACGCCAATCATTGTTGATGAAGTGTAAGATTTTGAGATTTTCCAAAAATTGAAATATCCGA</canonical>
            <polymorphic>TATATCTCATTTACTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATACCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATATATTATTTCCAGAAGAAACCTCCGCAGCTGCTCGAAACTTCATCGAGATCTCGTGGACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTACAAAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTMGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGATAGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACATTAGTACCTAAAGGATTGGATATTGAGAAGTTTTCACATGTCAAACGTCTGAAGATTAAAGTTGAAGATTCGGAATGGGATGTTCCGAAAATTCAAAATTTGATAATGGTGAGATCTCTACAGTAATGGACAAAACAACCTGTGAAAGAATTTTCTAGAATTTCAAACGACAAAATCATCCAGTCGGCTCTTTTTTCTCGATTCTTGTATATTTCCGTCCCAAAGGTTCAGAAAGAGAGGAAGAGGAAATTCCCACGCCAATCATTGTTGATGAAGTGTAAGATTTTGAGATTTTCCAAAAATTGAAATATCCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAAGTAATCCAAGATTTCCTA</pcr_primer_p1>
		<pcr_primer_p2>TTCGAATCTTATAGTTTCCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAA</canonical_amplicon>
		<polymorphic_amplicon>CTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTMGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25319</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>36420</contig_pos>
        <strand></strand>
        <context>AGAAAATTAT[C/G]TGGTACAGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTGAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTAT</left_flank>
        <right_flank>TGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATACCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATATATTATTTCCAGAAGAAACCTCCGCAGCTGCTCGAAACTTCATCGAGATCTCGTGGACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTACAAAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGATAGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACATTAGTACCTAAAGGATTGGATATTGAGAAGTTTTCACATGTCAAACGTCTGAAGATTAAAGTTGAAGATTCGGAATGGGATGTTCCGAAAATTCAAAATTTGATAATGGTGAGATCTCTACAGTAATGGACAAAACAACCTGTGAAAGAATTTTCTAGAATTTCAAACGACAAAATCATCCAGTCGGCTCTTTTTTCTCGATTCTTGTATATTTCCGTCCCAAAGGTTCAGAAAGAGAGGAAGAGGAAATTCCCACGCCAATCATTGTTGATGAAGTGTAAGATTTTGAGATTTTCCAAAAATTGAAATATCCGAAATTTTCAGAAAAATCC</canonical>
            <polymorphic>GAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATACCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATATATTATTTCCAGAAGAAACCTCCGCAGCTGCTCGAAACTTCATCGAGATCTCGTGGACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTACAAAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATSTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGATAGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACATTAGTACCTAAAGGATTGGATATTGAGAAGTTTTCACATGTCAAACGTCTGAAGATTAAAGTTGAAGATTCGGAATGGGATGTTCCGAAAATTCAAAATTTGATAATGGTGAGATCTCTACAGTAATGGACAAAACAACCTGTGAAAGAATTTTCTAGAATTTCAAACGACAAAATCATCCAGTCGGCTCTTTTTTCTCGATTCTTGTATATTTCCGTCCCAAAGGTTCAGAAAGAGAGGAAGAGGAAATTCCCACGCCAATCATTGTTGATGAAGTGTAAGATTTTGAGATTTTCCAAAAATTGAAATATCCGAAATTTTCAGAAAAATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAAGTAATCCAAGATTTCCTA</pcr_primer_p1>
		<pcr_primer_p2>TTCGAATCTTATAGTTTCCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAA</canonical_amplicon>
		<polymorphic_amplicon>CTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATSTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25320</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>36543</contig_pos>
        <strand></strand>
        <context>AAAGGCTGAT[A/G]GAAACGGAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGAT</left_flank>
        <right_flank>GAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACATTAGT</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGGGTGTCGTTCTATTAGAGGTTTTACGGTATATATTATTTCCAGAAGAAACCTCCGCAGCTGCTCGAAACTTCATCGAGATCTCGTGGACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTACAAAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGATAGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACATTAGTACCTAAAGGATTGGATATTGAGAAGTTTTCACATGTCAAACGTCTGAAGATTAAAGTTGAAGATTCGGAATGGGATGTTCCGAAAATTCAAAATTTGATAATGGTGAGATCTCTACAGTAATGGACAAAACAACCTGTGAAAGAATTTTCTAGAATTTCAAACGACAAAATCATCCAGTCGGCTCTTTTTTCTCGATTCTTGTATATTTCCGTCCCAAAGGTTCAGAAAGAGAGGAAGAGGAAATTCCCACGCCAATCATTGTTGATGAAGTGTAAGATTTTGAGATTTTCCAAAAATTGAAATATCCGAAATTTTCAGAAAAATCCTTCCGAAATCCGGTTACTATTTCCGGATGCCAAATAAGAACCATTTTTTGCGAGTGCATAGATTAGAGAATGGAATTGAAGGACTTGTGAGGGATAATAACGAATATATTGAATATTTTATTT</canonical>
            <polymorphic>CCGGGTGTCGTTCTATTAGAGGTTTTACGGTATATATTATTTCCAGAAGAAACCTCCGCAGCTGCTCGAAACTTCATCGAGATCTCGTGGACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTACAAAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGATRGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACATTAGTACCTAAAGGATTGGATATTGAGAAGTTTTCACATGTCAAACGTCTGAAGATTAAAGTTGAAGATTCGGAATGGGATGTTCCGAAAATTCAAAATTTGATAATGGTGAGATCTCTACAGTAATGGACAAAACAACCTGTGAAAGAATTTTCTAGAATTTCAAACGACAAAATCATCCAGTCGGCTCTTTTTTCTCGATTCTTGTATATTTCCGTCCCAAAGGTTCAGAAAGAGAGGAAGAGGAAATTCCCACGCCAATCATTGTTGATGAAGTGTAAGATTTTGAGATTTTCCAAAAATTGAAATATCCGAAATTTTCAGAAAAATCCTTCCGAAATCCGGTTACTATTTCCGGATGCCAAATAAGAACCATTTTTTGCGAGTGCATAGATTAGAGAATGGAATTGAAGGACTTGTGAGGGATAATAACGAATATATTGAATATTTTATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGAGCTCTGGAAACTATAAG</pcr_primer_p1>
		<pcr_primer_p2>TGTTTTGTCCATTACTGTAGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGGAGCTCTGGAAACTATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGATAGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACATTAGTACCTAAAGGATTGGATATTGAGAAGTTTTCACATGTCAAACGTCTGAAGATTAAAGTTGAAGATTCGGAATGGGATGTTCCGAAAATTCAAAATTTGATAATGGTGAGATCTCTACAGTAATGGACAAAACA</canonical_amplicon>
		<polymorphic_amplicon>TTGGAGCTCTGGAAACTATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGATRGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACATTAGTACCTAAAGGATTGGATATTGAGAAGTTTTCACATGTCAAACGTCTGAAGATTAAAGTTGAAGATTCGGAATGGGATGTTCCGAAAATTCAAAATTTGATAATGGTGAGATCTCTACAGTAATGGACAAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25321</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>36589</contig_pos>
        <strand></strand>
        <context>AACATCTACA[T/G]TASTACCTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TGATAGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACA</left_flank>
        <right_flank>TAGTACCTAAAGGATTGGATATTGAGAAGTTTTCACATGTCAAACGTCTG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAACCTCCGCAGCTGCTCGAAACTTCATCGAGATCTCGTGGACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTACAAAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGATAGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACATTAGTACCTAAAGGATTGGATATTGAGAAGTTTTCACATGTCAAACGTCTGAAGATTAAAGTTGAAGATTCGGAATGGGATGTTCCGAAAATTCAAAATTTGATAATGGTGAGATCTCTACAGTAATGGACAAAACAACCTGTGAAAGAATTTTCTAGAATTTCAAACGACAAAATCATCCAGTCGGCTCTTTTTTCTCGATTCTTGTATATTTCCGTCCCAAAGGTTCAGAAAGAGAGGAAGAGGAAATTCCCACGCCAATCATTGTTGATGAAGTGTAAGATTTTGAGATTTTCCAAAAATTGAAATATCCGAAATTTTCAGAAAAATCCTTCCGAAATCCGGTTACTATTTCCGGATGCCAAATAAGAACCATTTTTTGCGAGTGCATAGATTAGAGAATGGAATTGAAGGACTTGTGAGGGATAATAACGAATATATTGAATATTTTATTTTGTGAAAATTTATTTTTGGTTTTTTGAATAGTATTGAATAAGATTA</canonical>
            <polymorphic>AAGAAACCTCCGCAGCTGCTCGAAACTTCATCGAGATCTCGTGGACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTACAAAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGATAGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACAKTAGTACCTAAAGGATTGGATATTGAGAAGTTTTCACATGTCAAACGTCTGAAGATTAAAGTTGAAGATTCGGAATGGGATGTTCCGAAAATTCAAAATTTGATAATGGTGAGATCTCTACAGTAATGGACAAAACAACCTGTGAAAGAATTTTCTAGAATTTCAAACGACAAAATCATCCAGTCGGCTCTTTTTTCTCGATTCTTGTATATTTCCGTCCCAAAGGTTCAGAAAGAGAGGAAGAGGAAATTCCCACGCCAATCATTGTTGATGAAGTGTAAGATTTTGAGATTTTCCAAAAATTGAAATATCCGAAATTTTCAGAAAAATCCTTCCGAAATCCGGTTACTATTTCCGGATGCCAAATAAGAACCATTTTTTGCGAGTGCATAGATTAGAGAATGGAATTGAAGGACTTGTGAGGGATAATAACGAATATATTGAATATTTTATTTTGTGAAAATTTATTTTTGGTTTTTTGAATAGTATTGAATAAGATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGAGCTCTGGAAACTATAAG</pcr_primer_p1>
		<pcr_primer_p2>TGTTTTGTCCATTACTGTAGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGGAGCTCTGGAAACTATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGATAGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACATTAGTACCTAAAGGATTGGATATTGAGAAGTTTTCACATGTCAAACGTCTGAAGATTAAAGTTGAAGATTCGGAATGGGATGTTCCGAAAATTCAAAATTTGATAATGGTGAGATCTCTACAGTAATGGACAAAACA</canonical_amplicon>
		<polymorphic_amplicon>TTGGAGCTCTGGAAACTATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGATAGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACAKTAGTACCTAAAGGATTGGATATTGAGAAGTTTTCACATGTCAAACGTCTGAAGATTAAAGTTGAAGATTCGGAATGGGATGTTCCGAAAATTCAAAATTTGATAATGGTGAGATCTCTACAGTAATGGACAAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25322</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>36592</contig_pos>
        <strand></strand>
        <context>ATCTACAKTA[G/C]TACCTAAAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TAGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACATTA</left_flank>
        <right_flank>TACCTAAAGGATTGGATATTGAGAAGTTTTCACATGTCAAACGTCTGAAG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACCTCCGCAGCTGCTCGAAACTTCATCGAGATCTCGTGGACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTACAAAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGATAGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACATTAGTACCTAAAGGATTGGATATTGAGAAGTTTTCACATGTCAAACGTCTGAAGATTAAAGTTGAAGATTCGGAATGGGATGTTCCGAAAATTCAAAATTTGATAATGGTGAGATCTCTACAGTAATGGACAAAACAACCTGTGAAAGAATTTTCTAGAATTTCAAACGACAAAATCATCCAGTCGGCTCTTTTTTCTCGATTCTTGTATATTTCCGTCCCAAAGGTTCAGAAAGAGAGGAAGAGGAAATTCCCACGCCAATCATTGTTGATGAAGTGTAAGATTTTGAGATTTTCCAAAAATTGAAATATCCGAAATTTTCAGAAAAATCCTTCCGAAATCCGGTTACTATTTCCGGATGCCAAATAAGAACCATTTTTTGCGAGTGCATAGATTAGAGAATGGAATTGAAGGACTTGTGAGGGATAATAACGAATATATTGAATATTTTATTTTGTGAAAATTTATTTTTGGTTTTTTGAATAGTATTGAATAAGATTATCG</canonical>
            <polymorphic>AAACCTCCGCAGCTGCTCGAAACTTCATCGAGATCTCGTGGACTGCTGTCCATTTTTCATTGAGAAACTTGGATTTTTCTTGTCCGTCTCTAGAATTTCCATTTATTTCTCCACGGACTACAAAACTATCACAAAGCATTCTTATTCTAAAAATGAAAATACATTTACTGAAGTAATCCAAGATTTCCTACGACTTTTCCAAAACTCGAAATCTATTGTGAACGAGTTGACTGTAGACTTTTCCGACTTGGAAAAGTCAAAGATGGTGATTGATGAAATTGAGAAAATCGCAAAGGAGAATTTCAAAATTAGAGTGAAGAAAATTATCTGGTACAGCTGCCCGAACAACTTATCTGCAGTTCAATTTGTTAACTTTATTACTGTTGGAGCTCTGGAAACTATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGATAGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACATTASTACCTAAAGGATTGGATATTGAGAAGTTTTCACATGTCAAACGTCTGAAGATTAAAGTTGAAGATTCGGAATGGGATGTTCCGAAAATTCAAAATTTGATAATGGTGAGATCTCTACAGTAATGGACAAAACAACCTGTGAAAGAATTTTCTAGAATTTCAAACGACAAAATCATCCAGTCGGCTCTTTTTTCTCGATTCTTGTATATTTCCGTCCCAAAGGTTCAGAAAGAGAGGAAGAGGAAATTCCCACGCCAATCATTGTTGATGAAGTGTAAGATTTTGAGATTTTCCAAAAATTGAAATATCCGAAATTTTCAGAAAAATCCTTCCGAAATCCGGTTACTATTTCCGGATGCCAAATAAGAACCATTTTTTGCGAGTGCATAGATTAGAGAATGGAATTGAAGGACTTGTGAGGGATAATAACGAATATATTGAATATTTTATTTTGTGAAAATTTATTTTTGGTTTTTTGAATAGTATTGAATAAGATTATCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 332 169</canonical_bands>
                <polymorphic_bands>668 332</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGAGCTCTGGAAACTATAAG</pcr_primer_p1>
		<pcr_primer_p2>TGTTTTGTCCATTACTGTAGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGGAGCTCTGGAAACTATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGATAGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACATTAGTACCTAAAGGATTGGATATTGAGAAGTTTTCACATGTCAAACGTCTGAAGATTAAAGTTGAAGATTCGGAATGGGATGTTCCGAAAATTCAAAATTTGATAATGGTGAGATCTCTACAGTAATGGACAAAACA</canonical_amplicon>
		<polymorphic_amplicon>TTGGAGCTCTGGAAACTATAAGATTCGAATATCAACATGGGAACTTGGAAATGATAAAAAGGCTGATAGAAACGGAGCAATGGAAGCAGGCAGAAGAGATAACAACATCTACATTASTACCTAAAGGATTGGATATTGAGAAGTTTTCACATGTCAAACGTCTGAAGATTAAAGTTGAAGATTCGGAATGGGATGTTCCGAAAATTCAAAATTTGATAATGGTGAGATCTCTACAGTAATGGACAAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25323</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>77457</contig_pos>
        <strand>+</strand>
        <context>GACGGTCCTG[A/G]MAAATAGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGTGAGCTTGTGACAGAGAGCCAGTTGATGGGAATAAGTGACGGTCCTG</left_flank>
        <right_flank>CAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATGGTTTGAAAAAAAGCGGATTGTACGGAGAGATACTGAAAAATCAATAAGTGACATCGACAAACAGATTGACCATCTGGACACTGACCGTTTTATTAATATGCATTCGGCGATTCTCCACGACGAGAATCCCATCGGTATTAGGTGTCGATGGCAAGAACGCCTGATCAATGGGTAAATTTCGATAAGACAGTTTATAAGGGGTTAGATGAAGATCAAATGTTATATAGCATGTCGGGTACTTTTCGCTGTATTTGATATCGCTGGTGGGGCCGATGCGACGGACGACTTCTTGCTGGGGATTCGAAAATTCCACGTAGAATTTTATCGGCGCGGTTTTCTCCTTTTCCTTTCGGTAGGTGACGATGATGTCGCCTGAGAAGCCGTCGACGGATCCTTCGTTTTTGAGTTTTCGCCAGTCAAATTGCCACGTCAGATAGGCACAGTCAGTGAGCTTGTGACAGAGAGCCAGTTGATGGGAATAAGTGACGGTCCTGGCAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATTGACGAATTGACGTCGTCGCTAGTGTACTCAATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAAATGTCCAAAATTGAAATTTGCGCCAAAAGAAAACAACGCAAAGTGCAAACACCGACTCTGCGTACTTTTGCTTACCGTACTCTCCACCGATTTTTTCTGCAATTTTTGATTTTTTTCTTGCTTGAAAATCTTCAAAAATCAGTGTTTTTTCAGGCATTTCCCCGTAGTGCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGTTATAAA</canonical>
            <polymorphic>ACATGGTTTGAAAAAAAGCGGATTGTACGGAGAGATACTGAAAAATCAATAAGTGACATCGACAAACAGATTGACCATCTGGACACTGACCGTTTTATTAATATGCATTCGGCGATTCTCCACGACGAGAATCCCATCGGTATTAGGTGTCGATGGCAAGAACGCCTGATCAATGGGTAAATTTCGATAAGACAGTTTATAAGGGGTTAGATGAAGATCAAATGTTATATAGCATGTCGGGTACTTTTCGCTGTATTTGATATCGCTGGTGGGGCCGATGCGACGGACGACTTCTTGCTGGGGATTCGAAAATTCCACGTAGAATTTTATCGGCGCGGTTTTCTCCTTTTCCTTTCGGTAGGTGACGATGATGTCGCCTGAGAAGCCGTCGACGGATCCTTCGTTTTTGAGTTTTCGCCAGTCAAATTGCCACGTCAGATAGGCACAGTCAGTGAGCTTGTGACAGAGAGCCAGTTGATGGGAATAAGTGACGGTCCTGRCAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATTGACGAATTGACGTCGTCGCTAGTGTACTCAATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAAATGTCCAAAATTGAAATTTGCGCCAAAAGAAAACAACGCAAAGTGCAAACACCGACTCTGCGTACTTTTGCTTACCGTACTCTCCACCGATTTTTTCTGCAATTTTTGATTTTTTTCTTGCTTGAAAATCTTCAAAAATCAGTGTTTTTTCAGGCATTTCCCCGTAGTGCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGTTATAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>497 455 48</canonical_bands>
                <polymorphic_bands>545 455</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>497 455 48</canonical_bands>
                <polymorphic_bands>545 455</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTTCTCCTTTTCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>CACAAAAGAGCTGGACAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTTTTCTCCTTTTCCTTTCGGTAGGTGACGATGATGTCGCCTGAGAAGCCGTCGACGGATCCTTCGTTTTTGAGTTTTCGCCAGTCAAATTGCCACGTCAGATAGGCACAGTCAGTGAGCTTGTGACAGAGAGCCAGTTGATGGGAATAAGTGACGGTCCTGGCAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTG</canonical_amplicon>
		<polymorphic_amplicon>GGTTTTCTCCTTTTCCTTTCGGTAGGTGACGATGATGTCGCCTGAGAAGCCGTCGACGGATCCTTCGTTTTTGAGTTTTCGCCAGTCAAATTGCCACGTCAGATAGGCACAGTCAGTGAGCTTGTGACAGAGAGCCAGTTGATGGGAATAAGTGACGGTCCTGRCAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25324</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>77458</contig_pos>
        <strand>+</strand>
        <context>ACGGTCCTGR[A/C]AAATAGATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTGAGCTTGTGACAGAGAGCCAGTTGATGGGAATAAGTGACGGTCCTGG</left_flank>
        <right_flank>AAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGGTTTGAAAAAAAGCGGATTGTACGGAGAGATACTGAAAAATCAATAAGTGACATCGACAAACAGATTGACCATCTGGACACTGACCGTTTTATTAATATGCATTCGGCGATTCTCCACGACGAGAATCCCATCGGTATTAGGTGTCGATGGCAAGAACGCCTGATCAATGGGTAAATTTCGATAAGACAGTTTATAAGGGGTTAGATGAAGATCAAATGTTATATAGCATGTCGGGTACTTTTCGCTGTATTTGATATCGCTGGTGGGGCCGATGCGACGGACGACTTCTTGCTGGGGATTCGAAAATTCCACGTAGAATTTTATCGGCGCGGTTTTCTCCTTTTCCTTTCGGTAGGTGACGATGATGTCGCCTGAGAAGCCGTCGACGGATCCTTCGTTTTTGAGTTTTCGCCAGTCAAATTGCCACGTCAGATAGGCACAGTCAGTGAGCTTGTGACAGAGAGCCAGTTGATGGGAATAAGTGACGGTCCTGGCAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATTGACGAATTGACGTCGTCGCTAGTGTACTCAATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAAATGTCCAAAATTGAAATTTGCGCCAAAAGAAAACAACGCAAAGTGCAAACACCGACTCTGCGTACTTTTGCTTACCGTACTCTCCACCGATTTTTTCTGCAATTTTTGATTTTTTTCTTGCTTGAAAATCTTCAAAAATCAGTGTTTTTTCAGGCATTTCCCCGTAGTGCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGTTATAAAT</canonical>
            <polymorphic>CATGGTTTGAAAAAAAGCGGATTGTACGGAGAGATACTGAAAAATCAATAAGTGACATCGACAAACAGATTGACCATCTGGACACTGACCGTTTTATTAATATGCATTCGGCGATTCTCCACGACGAGAATCCCATCGGTATTAGGTGTCGATGGCAAGAACGCCTGATCAATGGGTAAATTTCGATAAGACAGTTTATAAGGGGTTAGATGAAGATCAAATGTTATATAGCATGTCGGGTACTTTTCGCTGTATTTGATATCGCTGGTGGGGCCGATGCGACGGACGACTTCTTGCTGGGGATTCGAAAATTCCACGTAGAATTTTATCGGCGCGGTTTTCTCCTTTTCCTTTCGGTAGGTGACGATGATGTCGCCTGAGAAGCCGTCGACGGATCCTTCGTTTTTGAGTTTTCGCCAGTCAAATTGCCACGTCAGATAGGCACAGTCAGTGAGCTTGTGACAGAGAGCCAGTTGATGGGAATAAGTGACGGTCCTGGMAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATTGACGAATTGACGTCGTCGCTAGTGTACTCAATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAAATGTCCAAAATTGAAATTTGCGCCAAAAGAAAACAACGCAAAGTGCAAACACCGACTCTGCGTACTTTTGCTTACCGTACTCTCCACCGATTTTTTCTGCAATTTTTGATTTTTTTCTTGCTTGAAAATCTTCAAAAATCAGTGTTTTTTCAGGCATTTCCCCGTAGTGCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGTTATAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTTCTCCTTTTCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>CACAAAAGAGCTGGACAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTTTTCTCCTTTTCCTTTCGGTAGGTGACGATGATGTCGCCTGAGAAGCCGTCGACGGATCCTTCGTTTTTGAGTTTTCGCCAGTCAAATTGCCACGTCAGATAGGCACAGTCAGTGAGCTTGTGACAGAGAGCCAGTTGATGGGAATAAGTGACGGTCCTGGCAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTG</canonical_amplicon>
		<polymorphic_amplicon>GGTTTTCTCCTTTTCCTTTCGGTAGGTGACGATGATGTCGCCTGAGAAGCCGTCGACGGATCCTTCGTTTTTGAGTTTTCGCCAGTCAAATTGCCACGTCAGATAGGCACAGTCAGTGAGCTTGTGACAGAGAGCCAGTTGATGGGAATAAGTGACGGTCCTGGMAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25325</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>77480</contig_pos>
        <strand>+</strand>
        <context>TAGGTTTAAA[A/C]ATTGAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTTGATGGGAATAAGTGACGGTCCTGGCAAATAGATTTTTAGGTTTAAA</left_flank>
        <right_flank>ATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTC</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTACGGAGAGATACTGAAAAATCAATAAGTGACATCGACAAACAGATTGACCATCTGGACACTGACCGTTTTATTAATATGCATTCGGCGATTCTCCACGACGAGAATCCCATCGGTATTAGGTGTCGATGGCAAGAACGCCTGATCAATGGGTAAATTTCGATAAGACAGTTTATAAGGGGTTAGATGAAGATCAAATGTTATATAGCATGTCGGGTACTTTTCGCTGTATTTGATATCGCTGGTGGGGCCGATGCGACGGACGACTTCTTGCTGGGGATTCGAAAATTCCACGTAGAATTTTATCGGCGCGGTTTTCTCCTTTTCCTTTCGGTAGGTGACGATGATGTCGCCTGAGAAGCCGTCGACGGATCCTTCGTTTTTGAGTTTTCGCCAGTCAAATTGCCACGTCAGATAGGCACAGTCAGTGAGCTTGTGACAGAGAGCCAGTTGATGGGAATAAGTGACGGTCCTGGCAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATTGACGAATTGACGTCGTCGCTAGTGTACTCAATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAAATGTCCAAAATTGAAATTTGCGCCAAAAGAAAACAACGCAAAGTGCAAACACCGACTCTGCGTACTTTTGCTTACCGTACTCTCCACCGATTTTTTCTGCAATTTTTGATTTTTTTCTTGCTTGAAAATCTTCAAAAATCAGTGTTTTTTCAGGCATTTCCCCGTAGTGCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGTTATAAATTATTGTTTCTTCTCTAATTTTT</canonical>
            <polymorphic>TGTACGGAGAGATACTGAAAAATCAATAAGTGACATCGACAAACAGATTGACCATCTGGACACTGACCGTTTTATTAATATGCATTCGGCGATTCTCCACGACGAGAATCCCATCGGTATTAGGTGTCGATGGCAAGAACGCCTGATCAATGGGTAAATTTCGATAAGACAGTTTATAAGGGGTTAGATGAAGATCAAATGTTATATAGCATGTCGGGTACTTTTCGCTGTATTTGATATCGCTGGTGGGGCCGATGCGACGGACGACTTCTTGCTGGGGATTCGAAAATTCCACGTAGAATTTTATCGGCGCGGTTTTCTCCTTTTCCTTTCGGTAGGTGACGATGATGTCGCCTGAGAAGCCGTCGACGGATCCTTCGTTTTTGAGTTTTCGCCAGTCAAATTGCCACGTCAGATAGGCACAGTCAGTGAGCTTGTGACAGAGAGCCAGTTGATGGGAATAAGTGACGGTCCTGGCAAATAGATTTTTAGGTTTAAAMATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATTGACGAATTGACGTCGTCGCTAGTGTACTCAATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAAATGTCCAAAATTGAAATTTGCGCCAAAAGAAAACAACGCAAAGTGCAAACACCGACTCTGCGTACTTTTGCTTACCGTACTCTCCACCGATTTTTTCTGCAATTTTTGATTTTTTTCTTGCTTGAAAATCTTCAAAAATCAGTGTTTTTTCAGGCATTTCCCCGTAGTGCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGTTATAAATTATTGTTTCTTCTCTAATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>156 131 102 98 86 84 81 64 54 30 25 19 18 15 12 8 7 6 4</canonical_bands>
                <polymorphic_bands>156 131 113 102 86 84 81 64 54 30 25 19 18 12 8 7 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTTGATGGGAATAAGTGAC</pcr_primer_p1>
		<pcr_primer_p2>CACTTTGCGTTGTTTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAGTTGATGGGAATAAGTGACGGTCCTGGCAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATTGACGAATTGACGTCGTCGCTAGTGTACTCAATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAAATGTCCAAAATTGAAATTTGCGCCAAAAGAAAACAACGCAAAGTG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTGATGGGAATAAGTGACGGTCCTGGCAAATAGATTTTTAGGTTTAAAMATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATTGACGAATTGACGTCGTCGCTAGTGTACTCAATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAAATGTCCAAAATTGAAATTTGCGCCAAAAGAAAACAACGCAAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25326</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>77552</contig_pos>
        <strand>+</strand>
        <context>TGTCGATAAT[A/T]KACGAATTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAAT</left_flank>
        <right_flank>GACGAATTGACGTCGTCGCTAGTGTACTCAATCGGTGAAAAGCACATTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTAATATGCATTCGGCGATTCTCCACGACGAGAATCCCATCGGTATTAGGTGTCGATGGCAAGAACGCCTGATCAATGGGTAAATTTCGATAAGACAGTTTATAAGGGGTTAGATGAAGATCAAATGTTATATAGCATGTCGGGTACTTTTCGCTGTATTTGATATCGCTGGTGGGGCCGATGCGACGGACGACTTCTTGCTGGGGATTCGAAAATTCCACGTAGAATTTTATCGGCGCGGTTTTCTCCTTTTCCTTTCGGTAGGTGACGATGATGTCGCCTGAGAAGCCGTCGACGGATCCTTCGTTTTTGAGTTTTCGCCAGTCAAATTGCCACGTCAGATAGGCACAGTCAGTGAGCTTGTGACAGAGAGCCAGTTGATGGGAATAAGTGACGGTCCTGGCAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATTGACGAATTGACGTCGTCGCTAGTGTACTCAATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAAATGTCCAAAATTGAAATTTGCGCCAAAAGAAAACAACGCAAAGTGCAAACACCGACTCTGCGTACTTTTGCTTACCGTACTCTCCACCGATTTTTTCTGCAATTTTTGATTTTTTTCTTGCTTGAAAATCTTCAAAAATCAGTGTTTTTTCAGGCATTTCCCCGTAGTGCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGTTATAAATTATTGTTTCTTCTCTAATTTTTTTTTCTTTTCTAGATCCTGTTGATTCTTATGCAAAAAAAATTTAAAATTTGAAAAACCGCTAAAATGAACAA</canonical>
            <polymorphic>TATTAATATGCATTCGGCGATTCTCCACGACGAGAATCCCATCGGTATTAGGTGTCGATGGCAAGAACGCCTGATCAATGGGTAAATTTCGATAAGACAGTTTATAAGGGGTTAGATGAAGATCAAATGTTATATAGCATGTCGGGTACTTTTCGCTGTATTTGATATCGCTGGTGGGGCCGATGCGACGGACGACTTCTTGCTGGGGATTCGAAAATTCCACGTAGAATTTTATCGGCGCGGTTTTCTCCTTTTCCTTTCGGTAGGTGACGATGATGTCGCCTGAGAAGCCGTCGACGGATCCTTCGTTTTTGAGTTTTCGCCAGTCAAATTGCCACGTCAGATAGGCACAGTCAGTGAGCTTGTGACAGAGAGCCAGTTGATGGGAATAAGTGACGGTCCTGGCAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATWGACGAATTGACGTCGTCGCTAGTGTACTCAATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAAATGTCCAAAATTGAAATTTGCGCCAAAAGAAAACAACGCAAAGTGCAAACACCGACTCTGCGTACTTTTGCTTACCGTACTCTCCACCGATTTTTTCTGCAATTTTTGATTTTTTTCTTGCTTGAAAATCTTCAAAAATCAGTGTTTTTTCAGGCATTTCCCCGTAGTGCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGTTATAAATTATTGTTTCTTCTCTAATTTTTTTTTCTTTTCTAGATCCTGTTGATTCTTATGCAAAAAAAATTTAAAATTTGAAAAACCGCTAAAATGAACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>131 102 98 86 84 84 81 64 54 45 30 27 25 19 18 15 12 8 7 6 4</canonical_bands>
                <polymorphic_bands>131 102 98 86 84 84 81 64 62 45 30 27 25 19 18 15 12 7 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTTGATGGGAATAAGTGAC</pcr_primer_p1>
		<pcr_primer_p2>CACTTTGCGTTGTTTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAGTTGATGGGAATAAGTGACGGTCCTGGCAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATTGACGAATTGACGTCGTCGCTAGTGTACTCAATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAAATGTCCAAAATTGAAATTTGCGCCAAAAGAAAACAACGCAAAGTG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTGATGGGAATAAGTGACGGTCCTGGCAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATWGACGAATTGACGTCGTCGCTAGTGTACTCAATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAAATGTCCAAAATTGAAATTTGCGCCAAAAGAAAACAACGCAAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25327</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>77553</contig_pos>
        <strand>+</strand>
        <context>GTCGATAATW[G/T]ACGAATTGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATT</left_flank>
        <right_flank>ACGAATTGACGTCGTCGCTAGTGTACTCAATCGGTGAAAAGCACATTTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAATATGCATTCGGCGATTCTCCACGACGAGAATCCCATCGGTATTAGGTGTCGATGGCAAGAACGCCTGATCAATGGGTAAATTTCGATAAGACAGTTTATAAGGGGTTAGATGAAGATCAAATGTTATATAGCATGTCGGGTACTTTTCGCTGTATTTGATATCGCTGGTGGGGCCGATGCGACGGACGACTTCTTGCTGGGGATTCGAAAATTCCACGTAGAATTTTATCGGCGCGGTTTTCTCCTTTTCCTTTCGGTAGGTGACGATGATGTCGCCTGAGAAGCCGTCGACGGATCCTTCGTTTTTGAGTTTTCGCCAGTCAAATTGCCACGTCAGATAGGCACAGTCAGTGAGCTTGTGACAGAGAGCCAGTTGATGGGAATAAGTGACGGTCCTGGCAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATTGACGAATTGACGTCGTCGCTAGTGTACTCAATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAAATGTCCAAAATTGAAATTTGCGCCAAAAGAAAACAACGCAAAGTGCAAACACCGACTCTGCGTACTTTTGCTTACCGTACTCTCCACCGATTTTTTCTGCAATTTTTGATTTTTTTCTTGCTTGAAAATCTTCAAAAATCAGTGTTTTTTCAGGCATTTCCCCGTAGTGCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGTTATAAATTATTGTTTCTTCTCTAATTTTTTTTTCTTTTCTAGATCCTGTTGATTCTTATGCAAAAAAAATTTAAAATTTGAAAAACCGCTAAAATGAACAAC</canonical>
            <polymorphic>ATTAATATGCATTCGGCGATTCTCCACGACGAGAATCCCATCGGTATTAGGTGTCGATGGCAAGAACGCCTGATCAATGGGTAAATTTCGATAAGACAGTTTATAAGGGGTTAGATGAAGATCAAATGTTATATAGCATGTCGGGTACTTTTCGCTGTATTTGATATCGCTGGTGGGGCCGATGCGACGGACGACTTCTTGCTGGGGATTCGAAAATTCCACGTAGAATTTTATCGGCGCGGTTTTCTCCTTTTCCTTTCGGTAGGTGACGATGATGTCGCCTGAGAAGCCGTCGACGGATCCTTCGTTTTTGAGTTTTCGCCAGTCAAATTGCCACGTCAGATAGGCACAGTCAGTGAGCTTGTGACAGAGAGCCAGTTGATGGGAATAAGTGACGGTCCTGGCAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATTKACGAATTGACGTCGTCGCTAGTGTACTCAATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAAATGTCCAAAATTGAAATTTGCGCCAAAAGAAAACAACGCAAAGTGCAAACACCGACTCTGCGTACTTTTGCTTACCGTACTCTCCACCGATTTTTTCTGCAATTTTTGATTTTTTTCTTGCTTGAAAATCTTCAAAAATCAGTGTTTTTTCAGGCATTTCCCCGTAGTGCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGTTATAAATTATTGTTTCTTCTCTAATTTTTTTTTCTTTTCTAGATCCTGTTGATTCTTATGCAAAAAAAATTTAAAATTTGAAAAACCGCTAAAATGAACAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTGATGGGAATAAGTGAC</pcr_primer_p1>
		<pcr_primer_p2>CACTTTGCGTTGTTTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAGTTGATGGGAATAAGTGACGGTCCTGGCAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATTGACGAATTGACGTCGTCGCTAGTGTACTCAATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAAATGTCCAAAATTGAAATTTGCGCCAAAAGAAAACAACGCAAAGTG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTGATGGGAATAAGTGACGGTCCTGGCAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATTKACGAATTGACGTCGTCGCTAGTGTACTCAATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAAATGTCCAAAATTGAAATTTGCGCCAAAAGAAAACAACGCAAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25328</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>77582</contig_pos>
        <strand>+</strand>
        <context>TAGTGTACTC[A/G]ATCGGTGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCTCTTTTGTGTCGATAATTGACGAATTGACGTCGTCGCTAGTGTACTC</left_flank>
        <right_flank>ATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAA</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGAATCCCATCGGTATTAGGTGTCGATGGCAAGAACGCCTGATCAATGGGTAAATTTCGATAAGACAGTTTATAAGGGGTTAGATGAAGATCAAATGTTATATAGCATGTCGGGTACTTTTCGCTGTATTTGATATCGCTGGTGGGGCCGATGCGACGGACGACTTCTTGCTGGGGATTCGAAAATTCCACGTAGAATTTTATCGGCGCGGTTTTCTCCTTTTCCTTTCGGTAGGTGACGATGATGTCGCCTGAGAAGCCGTCGACGGATCCTTCGTTTTTGAGTTTTCGCCAGTCAAATTGCCACGTCAGATAGGCACAGTCAGTGAGCTTGTGACAGAGAGCCAGTTGATGGGAATAAGTGACGGTCCTGGCAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATTGACGAATTGACGTCGTCGCTAGTGTACTCAATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAAATGTCCAAAATTGAAATTTGCGCCAAAAGAAAACAACGCAAAGTGCAAACACCGACTCTGCGTACTTTTGCTTACCGTACTCTCCACCGATTTTTTCTGCAATTTTTGATTTTTTTCTTGCTTGAAAATCTTCAAAAATCAGTGTTTTTTCAGGCATTTCCCCGTAGTGCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGTTATAAATTATTGTTTCTTCTCTAATTTTTTTTTCTTTTCTAGATCCTGTTGATTCTTATGCAAAAAAAATTTAAAATTTGAAAAACCGCTAAAATGAACAACTACGGTCGACAAAAATGTGCAAACACCGA</canonical>
            <polymorphic>CGAGAATCCCATCGGTATTAGGTGTCGATGGCAAGAACGCCTGATCAATGGGTAAATTTCGATAAGACAGTTTATAAGGGGTTAGATGAAGATCAAATGTTATATAGCATGTCGGGTACTTTTCGCTGTATTTGATATCGCTGGTGGGGCCGATGCGACGGACGACTTCTTGCTGGGGATTCGAAAATTCCACGTAGAATTTTATCGGCGCGGTTTTCTCCTTTTCCTTTCGGTAGGTGACGATGATGTCGCCTGAGAAGCCGTCGACGGATCCTTCGTTTTTGAGTTTTCGCCAGTCAAATTGCCACGTCAGATAGGCACAGTCAGTGAGCTTGTGACAGAGAGCCAGTTGATGGGAATAAGTGACGGTCCTGGCAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATTGACGAATTGACGTCGTCGCTAGTGTACTCRATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAAATGTCCAAAATTGAAATTTGCGCCAAAAGAAAACAACGCAAAGTGCAAACACCGACTCTGCGTACTTTTGCTTACCGTACTCTCCACCGATTTTTTCTGCAATTTTTGATTTTTTTCTTGCTTGAAAATCTTCAAAAATCAGTGTTTTTTCAGGCATTTCCCCGTAGTGCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGTTATAAATTATTGTTTCTTCTCTAATTTTTTTTTCTTTTCTAGATCCTGTTGATTCTTATGCAAAAAAAATTTAAAATTTGAAAAACCGCTAAAATGAACAACTACGGTCGACAAAAATGTGCAAACACCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTGATGGGAATAAGTGAC</pcr_primer_p1>
		<pcr_primer_p2>CACTTTGCGTTGTTTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAGTTGATGGGAATAAGTGACGGTCCTGGCAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATTGACGAATTGACGTCGTCGCTAGTGTACTCAATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAAATGTCCAAAATTGAAATTTGCGCCAAAAGAAAACAACGCAAAGTG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTGATGGGAATAAGTGACGGTCCTGGCAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATTGACGAATTGACGTCGTCGCTAGTGTACTCRATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAAATGTCCAAAATTGAAATTTGCGCCAAAAGAAAACAACGCAAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25329</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>77847</contig_pos>
        <strand></strand>
        <context>CAGAAAAATA[A/G]GTAAAAATAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGTGCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATA</left_flank>
        <right_flank>GTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATAC</right_flank>
        <qual_score>47</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGGATCCTTCGTTTTTGAGTTTTCGCCAGTCAAATTGCCACGTCAGATAGGCACAGTCAGTGAGCTTGTGACAGAGAGCCAGTTGATGGGAATAAGTGACGGTCCTGGCAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATTGACGAATTGACGTCGTCGCTAGTGTACTCAATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAAATGTCCAAAATTGAAATTTGCGCCAAAAGAAAACAACGCAAAGTGCAAACACCGACTCTGCGTACTTTTGCTTACCGTACTCTCCACCGATTTTTTCTGCAATTTTTGATTTTTTTCTTGCTTGAAAATCTTCAAAAATCAGTGTTTTTTCAGGCATTTCCCCGTAGTGCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGTTATAAATTATTGTTTCTTCTCTAATTTTTTTTTCTTTTCTAGATCCTGTTGATTCTTATGCAAAAAAAATTTAAAATTTGAAAAACCGCTAAAATGAACAACTACGGTCGACAAAAATGTGCAAACACCGACTCTGCGTACATTTGCTGACCGTACTCTCCACTGATTTTTTCTCAGATTTTTTGTCATTTTTGCTCGAAAATCTTCCAAATTATTTGACTTTCTTTTTTATTTTTTGCATTTTTCCGTACGTCTAAAATCGAAAAAAAAATGTCTAAATTCAAAAAATATGTAAAAATGTGTCTGAAAAATTTTTTTCAGCAATCTCCAGACTGCTCCCGAAACTGCAATTCGTGTCTTTCATCTTTTTTTCCTTCAAAAATAATAGCTTTTTAT</canonical>
            <polymorphic>GACGGATCCTTCGTTTTTGAGTTTTCGCCAGTCAAATTGCCACGTCAGATAGGCACAGTCAGTGAGCTTGTGACAGAGAGCCAGTTGATGGGAATAAGTGACGGTCCTGGCAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATTGACGAATTGACGTCGTCGCTAGTGTACTCAATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAAATGTCCAAAATTGAAATTTGCGCCAAAAGAAAACAACGCAAAGTGCAAACACCGACTCTGCGTACTTTTGCTTACCGTACTCTCCACCGATTTTTTCTGCAATTTTTGATTTTTTTCTTGCTTGAAAATCTTCAAAAATCAGTGTTTTTTCAGGCATTTCCCCGTAGTGCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATARGTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGTTATAAATTATTGTTTCTTCTCTAATTTTTTTTTCTTTTCTAGATCCTGTTGATTCTTATGCAAAAAAAATTTAAAATTTGAAAAACCGCTAAAATGAACAACTACGGTCGACAAAAATGTGCAAACACCGACTCTGCGTACATTTGCTGACCGTACTCTCCACTGATTTTTTCTCAGATTTTTTGTCATTTTTGCTCGAAAATCTTCCAAATTATTTGACTTTCTTTTTTATTTTTTGCATTTTTCCGTACGTCTAAAATCGAAAAAAAAATGTCTAAATTCAAAAAATATGTAAAAATGTGTCTGAAAAATTTTTTTCAGCAATCTCCAGACTGCTCCCGAAACTGCAATTCGTGTCTTTCATCTTTTTTTCCTTCAAAAATAATAGCTTTTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAAAACAACGCAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>GAGCAGTATGGAGTGTTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAAGAAAACAACGCAAAGTGCAAACACCGACTCTGCGTACTTTTGCTTACCGTACTCTCCACCGATTTTTTCTGCAATTTTTGATTTTTTTCTTGCTTGAAAATCTTCAAAAATCAGTGTTTTTTCAGGCATTTCCCCGTAGTGCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATACTGCTC</canonical_amplicon>
		<polymorphic_amplicon>AAAGAAAACAACGCAAAGTGCAAACACCGACTCTGCGTACTTTTGCTTACCGTACTCTCCACCGATTTTTTCTGCAATTTTTGATTTTTTTCTTGCTTGAAAATCTTCAAAAATCAGTGTTTTTTCAGGCATTTCCCCGTAGTGCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATARGTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATACTGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25330</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>77877</contig_pos>
        <strand>+</strand>
        <context>ATTGAAATCG[A/G]TTTTTTTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCG</left_flank>
        <right_flank>TTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCAAATTGCCACGTCAGATAGGCACAGTCAGTGAGCTTGTGACAGAGAGCCAGTTGATGGGAATAAGTGACGGTCCTGGCAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATTGACGAATTGACGTCGTCGCTAGTGTACTCAATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAAATGTCCAAAATTGAAATTTGCGCCAAAAGAAAACAACGCAAAGTGCAAACACCGACTCTGCGTACTTTTGCTTACCGTACTCTCCACCGATTTTTTCTGCAATTTTTGATTTTTTTCTTGCTTGAAAATCTTCAAAAATCAGTGTTTTTTCAGGCATTTCCCCGTAGTGCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGTTATAAATTATTGTTTCTTCTCTAATTTTTTTTTCTTTTCTAGATCCTGTTGATTCTTATGCAAAAAAAATTTAAAATTTGAAAAACCGCTAAAATGAACAACTACGGTCGACAAAAATGTGCAAACACCGACTCTGCGTACATTTGCTGACCGTACTCTCCACTGATTTTTTCTCAGATTTTTTGTCATTTTTGCTCGAAAATCTTCCAAATTATTTGACTTTCTTTTTTATTTTTTGCATTTTTCCGTACGTCTAAAATCGAAAAAAAAATGTCTAAATTCAAAAAATATGTAAAAATGTGTCTGAAAAATTTTTTTCAGCAATCTCCAGACTGCTCCCGAAACTGCAATTCGTGTCTTTCATCTTTTTTTCCTTCAAAAATAATAGCTTTTTATTTGTTTTTCACTGAATTTTGTCTTCTTTGT</canonical>
            <polymorphic>GTCAAATTGCCACGTCAGATAGGCACAGTCAGTGAGCTTGTGACAGAGAGCCAGTTGATGGGAATAAGTGACGGTCCTGGCAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATTGACGAATTGACGTCGTCGCTAGTGTACTCAATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAAATGTCCAAAATTGAAATTTGCGCCAAAAGAAAACAACGCAAAGTGCAAACACCGACTCTGCGTACTTTTGCTTACCGTACTCTCCACCGATTTTTTCTGCAATTTTTGATTTTTTTCTTGCTTGAAAATCTTCAAAAATCAGTGTTTTTTCAGGCATTTCCCCGTAGTGCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCGRTTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGTTATAAATTATTGTTTCTTCTCTAATTTTTTTTTCTTTTCTAGATCCTGTTGATTCTTATGCAAAAAAAATTTAAAATTTGAAAAACCGCTAAAATGAACAACTACGGTCGACAAAAATGTGCAAACACCGACTCTGCGTACATTTGCTGACCGTACTCTCCACTGATTTTTTCTCAGATTTTTTGTCATTTTTGCTCGAAAATCTTCCAAATTATTTGACTTTCTTTTTTATTTTTTGCATTTTTCCGTACGTCTAAAATCGAAAAAAAAATGTCTAAATTCAAAAAATATGTAAAAATGTGTCTGAAAAATTTTTTTCAGCAATCTCCAGACTGCTCCCGAAACTGCAATTCGTGTCTTTCATCTTTTTTTCCTTCAAAAATAATAGCTTTTTATTTGTTTTTCACTGAATTTTGTCTTCTTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAAGCTTGACAAATTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TGTTCATTTTAGCGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGTTATAAATTATTGTTTCTTCTCTAATTTTTTTTTCTTTTCTAGATCCTGTTGATTCTTATGCAAAAAAAATTTAAAATTTGAAAAACCGCTAAAATGAACA</canonical_amplicon>
		<polymorphic_amplicon>GCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCGRTTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGTTATAAATTATTGTTTCTTCTCTAATTTTTTTTTCTTTTCTAGATCCTGTTGATTCTTATGCAAAAAAAATTTAAAATTTGAAAAACCGCTAAAATGAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25331</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>77933</contig_pos>
        <strand></strand>
        <context>attaattttg[T/A]ttttttttct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTG</left_flank>
        <right_flank>TTTTTTTTCTTTTAAAGTTATAAATTATTGTTTCTTCTCTAATTTTTTTT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGGGAATAAGTGACGGTCCTGGCAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATTGACGAATTGACGTCGTCGCTAGTGTACTCAATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAAATGTCCAAAATTGAAATTTGCGCCAAAAGAAAACAACGCAAAGTGCAAACACCGACTCTGCGTACTTTTGCTTACCGTACTCTCCACCGATTTTTTCTGCAATTTTTGATTTTTTTCTTGCTTGAAAATCTTCAAAAATCAGTGTTTTTTCAGGCATTTCCCCGTAGTGCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGTTATAAATTATTGTTTCTTCTCTAATTTTTTTTTCTTTTCTAGATCCTGTTGATTCTTATGCAAAAAAAATTTAAAATTTGAAAAACCGCTAAAATGAACAACTACGGTCGACAAAAATGTGCAAACACCGACTCTGCGTACATTTGCTGACCGTACTCTCCACTGATTTTTTCTCAGATTTTTTGTCATTTTTGCTCGAAAATCTTCCAAATTATTTGACTTTCTTTTTTATTTTTTGCATTTTTCCGTACGTCTAAAATCGAAAAAAAAATGTCTAAATTCAAAAAATATGTAAAAATGTGTCTGAAAAATTTTTTTCAGCAATCTCCAGACTGCTCCCGAAACTGCAATTCGTGTCTTTCATCTTTTTTTCCTTCAAAAATAATAGCTTTTTATTTGTTTTTCACTGAATTTTGTCTTCTTTGTTTATGCTTGCTTACAAATTTTCTGCAGAAAAATGTAAAATTTGAAAAACCGCTTAA</canonical>
            <polymorphic>GATGGGAATAAGTGACGGTCCTGGCAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATTGACGAATTGACGTCGTCGCTAGTGTACTCAATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAAATGTCCAAAATTGAAATTTGCGCCAAAAGAAAACAACGCAAAGTGCAAACACCGACTCTGCGTACTTTTGCTTACCGTACTCTCCACCGATTTTTTCTGCAATTTTTGATTTTTTTCTTGCTTGAAAATCTTCAAAAATCAGTGTTTTTTCAGGCATTTCCCCGTAGTGCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGWTTTTTTTTCTTTTAAAGTTATAAATTATTGTTTCTTCTCTAATTTTTTTTTCTTTTCTAGATCCTGTTGATTCTTATGCAAAAAAAATTTAAAATTTGAAAAACCGCTAAAATGAACAACTACGGTCGACAAAAATGTGCAAACACCGACTCTGCGTACATTTGCTGACCGTACTCTCCACTGATTTTTTCTCAGATTTTTTGTCATTTTTGCTCGAAAATCTTCCAAATTATTTGACTTTCTTTTTTATTTTTTGCATTTTTCCGTACGTCTAAAATCGAAAAAAAAATGTCTAAATTCAAAAAATATGTAAAAATGTGTCTGAAAAATTTTTTTCAGCAATCTCCAGACTGCTCCCGAAACTGCAATTCGTGTCTTTCATCTTTTTTTCCTTCAAAAATAATAGCTTTTTATTTGTTTTTCACTGAATTTTGTCTTCTTTGTTTATGCTTGCTTACAAATTTTCTGCAGAAAAATGTAAAATTTGAAAAACCGCTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAAGCTTGACAAATTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TGTTCATTTTAGCGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGTTATAAATTATTGTTTCTTCTCTAATTTTTTTTTCTTTTCTAGATCCTGTTGATTCTTATGCAAAAAAAATTTAAAATTTGAAAAACCGCTAAAATGAACA</canonical_amplicon>
		<polymorphic_amplicon>GCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGWTTTTTTTTCTTTTAAAGTTATAAATTATTGTTTCTTCTCTAATTTTTTTTTCTTTTCTAGATCCTGTTGATTCTTATGCAAAAAAAATTTAAAATTTGAAAAACCGCTAAAATGAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25332</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>77951</contig_pos>
        <strand></strand>
        <context>tcttttaaag[T/C]twtaaattat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAG</left_flank>
        <right_flank>TATAAATTATTGTTTCTTCTCTAATTTTTTTTTCTTTTCTAGATCCTGTT</right_flank>
        <qual_score>50</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTGGCAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATTGACGAATTGACGTCGTCGCTAGTGTACTCAATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAAATGTCCAAAATTGAAATTTGCGCCAAAAGAAAACAACGCAAAGTGCAAACACCGACTCTGCGTACTTTTGCTTACCGTACTCTCCACCGATTTTTTCTGCAATTTTTGATTTTTTTCTTGCTTGAAAATCTTCAAAAATCAGTGTTTTTTCAGGCATTTCCCCGTAGTGCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGTTATAAATTATTGTTTCTTCTCTAATTTTTTTTTCTTTTCTAGATCCTGTTGATTCTTATGCAAAAAAAATTTAAAATTTGAAAAACCGCTAAAATGAACAACTACGGTCGACAAAAATGTGCAAACACCGACTCTGCGTACATTTGCTGACCGTACTCTCCACTGATTTTTTCTCAGATTTTTTGTCATTTTTGCTCGAAAATCTTCCAAATTATTTGACTTTCTTTTTTATTTTTTGCATTTTTCCGTACGTCTAAAATCGAAAAAAAAATGTCTAAATTCAAAAAATATGTAAAAATGTGTCTGAAAAATTTTTTTCAGCAATCTCCAGACTGCTCCCGAAACTGCAATTCGTGTCTTTCATCTTTTTTTCCTTCAAAAATAATAGCTTTTTATTTGTTTTTCACTGAATTTTGTCTTCTTTGTTTATGCTTGCTTACAAATTTTCTGCAGAAAAATGTAAAATTTGAAAAACCGCTTAAATGAACAACTACGGTCGG</canonical>
            <polymorphic>TCCTGGCAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATTGACGAATTGACGTCGTCGCTAGTGTACTCAATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAAATGTCCAAAATTGAAATTTGCGCCAAAAGAAAACAACGCAAAGTGCAAACACCGACTCTGCGTACTTTTGCTTACCGTACTCTCCACCGATTTTTTCTGCAATTTTTGATTTTTTTCTTGCTTGAAAATCTTCAAAAATCAGTGTTTTTTCAGGCATTTCCCCGTAGTGCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGYTATAAATTATTGTTTCTTCTCTAATTTTTTTTTCTTTTCTAGATCCTGTTGATTCTTATGCAAAAAAAATTTAAAATTTGAAAAACCGCTAAAATGAACAACTACGGTCGACAAAAATGTGCAAACACCGACTCTGCGTACATTTGCTGACCGTACTCTCCACTGATTTTTTCTCAGATTTTTTGTCATTTTTGCTCGAAAATCTTCCAAATTATTTGACTTTCTTTTTTATTTTTTGCATTTTTCCGTACGTCTAAAATCGAAAAAAAAATGTCTAAATTCAAAAAATATGTAAAAATGTGTCTGAAAAATTTTTTTCAGCAATCTCCAGACTGCTCCCGAAACTGCAATTCGTGTCTTTCATCTTTTTTTCCTTCAAAAATAATAGCTTTTTATTTGTTTTTCACTGAATTTTGTCTTCTTTGTTTATGCTTGCTTACAAATTTTCTGCAGAAAAATGTAAAATTTGAAAAACCGCTTAAATGAACAACTACGGTCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTAAGCTTGACAAATTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TGTTCATTTTAGCGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGTTATAAATTATTGTTTCTTCTCTAATTTTTTTTTCTTTTCTAGATCCTGTTGATTCTTATGCAAAAAAAATTTAAAATTTGAAAAACCGCTAAAATGAACA</canonical_amplicon>
		<polymorphic_amplicon>GCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGYTATAAATTATTGTTTCTTCTCTAATTTTTTTTTCTTTTCTAGATCCTGTTGATTCTTATGCAAAAAAAATTTAAAATTTGAAAAACCGCTAAAATGAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25333</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>77953</contig_pos>
        <strand></strand>
        <context>ttttaaagyt[A/T]taaattattG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGTT</left_flank>
        <right_flank>TAAATTATTGTTTCTTCTCTAATTTTTTTTTCTTTTCTAGATCCTGTTGA</right_flank>
        <qual_score>50</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGGCAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATTGACGAATTGACGTCGTCGCTAGTGTACTCAATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAAATGTCCAAAATTGAAATTTGCGCCAAAAGAAAACAACGCAAAGTGCAAACACCGACTCTGCGTACTTTTGCTTACCGTACTCTCCACCGATTTTTTCTGCAATTTTTGATTTTTTTCTTGCTTGAAAATCTTCAAAAATCAGTGTTTTTTCAGGCATTTCCCCGTAGTGCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGTTATAAATTATTGTTTCTTCTCTAATTTTTTTTTCTTTTCTAGATCCTGTTGATTCTTATGCAAAAAAAATTTAAAATTTGAAAAACCGCTAAAATGAACAACTACGGTCGACAAAAATGTGCAAACACCGACTCTGCGTACATTTGCTGACCGTACTCTCCACTGATTTTTTCTCAGATTTTTTGTCATTTTTGCTCGAAAATCTTCCAAATTATTTGACTTTCTTTTTTATTTTTTGCATTTTTCCGTACGTCTAAAATCGAAAAAAAAATGTCTAAATTCAAAAAATATGTAAAAATGTGTCTGAAAAATTTTTTTCAGCAATCTCCAGACTGCTCCCGAAACTGCAATTCGTGTCTTTCATCTTTTTTTCCTTCAAAAATAATAGCTTTTTATTTGTTTTTCACTGAATTTTGTCTTCTTTGTTTATGCTTGCTTACAAATTTTCTGCAGAAAAATGTAAAATTTGAAAAACCGCTTAAATGAACAACTACGGTCGGCA</canonical>
            <polymorphic>CTGGCAAATAGATTTTTAGGTTTAAAAATTGAAAAATATCAAATTTACCAGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATTGACGAATTGACGTCGTCGCTAGTGTACTCAATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAAATGTCCAAAATTGAAATTTGCGCCAAAAGAAAACAACGCAAAGTGCAAACACCGACTCTGCGTACTTTTGCTTACCGTACTCTCCACCGATTTTTTCTGCAATTTTTGATTTTTTTCTTGCTTGAAAATCTTCAAAAATCAGTGTTTTTTCAGGCATTTCCCCGTAGTGCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGTTWTAAATTATTGTTTCTTCTCTAATTTTTTTTTCTTTTCTAGATCCTGTTGATTCTTATGCAAAAAAAATTTAAAATTTGAAAAACCGCTAAAATGAACAACTACGGTCGACAAAAATGTGCAAACACCGACTCTGCGTACATTTGCTGACCGTACTCTCCACTGATTTTTTCTCAGATTTTTTGTCATTTTTGCTCGAAAATCTTCCAAATTATTTGACTTTCTTTTTTATTTTTTGCATTTTTCCGTACGTCTAAAATCGAAAAAAAAATGTCTAAATTCAAAAAATATGTAAAAATGTGTCTGAAAAATTTTTTTCAGCAATCTCCAGACTGCTCCCGAAACTGCAATTCGTGTCTTTCATCTTTTTTTCCTTCAAAAATAATAGCTTTTTATTTGTTTTTCACTGAATTTTGTCTTCTTTGTTTATGCTTGCTTACAAATTTTCTGCAGAAAAATGTAAAATTTGAAAAACCGCTTAAATGAACAACTACGGTCGGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTAAGCTTGACAAATTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TGTTCATTTTAGCGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGTTATAAATTATTGTTTCTTCTCTAATTTTTTTTTCTTTTCTAGATCCTGTTGATTCTTATGCAAAAAAAATTTAAAATTTGAAAAACCGCTAAAATGAACA</canonical_amplicon>
		<polymorphic_amplicon>GCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGTTWTAAATTATTGTTTCTTCTCTAATTTTTTTTTCTTTTCTAGATCCTGTTGATTCTTATGCAAAAAAAATTTAAAATTTGAAAAACCGCTAAAATGAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25334</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>78002</contig_pos>
        <strand>+</strand>
        <context>AGATCCTGTT[G/T]ATTCTTATGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATAAATTATTGTTTCTTCTCTAATTTTTTTTTCTTTTCTAGATCCTGTT</left_flank>
        <right_flank>ATTCTTATGCAAAAAAAATTTAAAATTTGAAAAACCGCTAAAATGAACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATTGACGAATTGACGTCGTCGCTAGTGTACTCAATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAAATGTCCAAAATTGAAATTTGCGCCAAAAGAAAACAACGCAAAGTGCAAACACCGACTCTGCGTACTTTTGCTTACCGTACTCTCCACCGATTTTTTCTGCAATTTTTGATTTTTTTCTTGCTTGAAAATCTTCAAAAATCAGTGTTTTTTCAGGCATTTCCCCGTAGTGCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGTTATAAATTATTGTTTCTTCTCTAATTTTTTTTTCTTTTCTAGATCCTGTTGATTCTTATGCAAAAAAAATTTAAAATTTGAAAAACCGCTAAAATGAACAACTACGGTCGACAAAAATGTGCAAACACCGACTCTGCGTACATTTGCTGACCGTACTCTCCACTGATTTTTTCTCAGATTTTTTGTCATTTTTGCTCGAAAATCTTCCAAATTATTTGACTTTCTTTTTTATTTTTTGCATTTTTCCGTACGTCTAAAATCGAAAAAAAAATGTCTAAATTCAAAAAATATGTAAAAATGTGTCTGAAAAATTTTTTTCAGCAATCTCCAGACTGCTCCCGAAACTGCAATTCGTGTCTTTCATCTTTTTTTCCTTCAAAAATAATAGCTTTTTATTTGTTTTTCACTGAATTTTGTCTTCTTTGTTTATGCTTGCTTACAAATTTTCTGCAGAAAAATGTAAAATTTGAAAAACCGCTTAAATGAACAACTACGGTCGGCAAAAGTGTGCAAACACCGACTCTCCGTACTTTTGCTGACCGTACTCTCCA</canonical>
            <polymorphic>AGGTTAAACCATCCTTTGAGCCTCTGTCCAGCTCTTTTGTGTCGATAATTGACGAATTGACGTCGTCGCTAGTGTACTCAATCGGTGAAAAGCACATTTTTTGGCTGAAAATGAGAAAAATCGACAAAAAATGTCCAAAATTGAAATTTGCGCCAAAAGAAAACAACGCAAAGTGCAAACACCGACTCTGCGTACTTTTGCTTACCGTACTCTCCACCGATTTTTTCTGCAATTTTTGATTTTTTTCTTGCTTGAAAATCTTCAAAAATCAGTGTTTTTTCAGGCATTTCCCCGTAGTGCTAAGCTTGACAAATTGAAAAAAATCCTTAAAATTCAGAAAAATAAGTAAAAATACAATTTTCGGATTGAAATCGTTTTTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGTTATAAATTATTGTTTCTTCTCTAATTTTTTTTTCTTTTCTAGATCCTGTTKATTCTTATGCAAAAAAAATTTAAAATTTGAAAAACCGCTAAAATGAACAACTACGGTCGACAAAAATGTGCAAACACCGACTCTGCGTACATTTGCTGACCGTACTCTCCACTGATTTTTTCTCAGATTTTTTGTCATTTTTGCTCGAAAATCTTCCAAATTATTTGACTTTCTTTTTTATTTTTTGCATTTTTCCGTACGTCTAAAATCGAAAAAAAAATGTCTAAATTCAAAAAATATGTAAAAATGTGTCTGAAAAATTTTTTTCAGCAATCTCCAGACTGCTCCCGAAACTGCAATTCGTGTCTTTCATCTTTTTTTCCTTCAAAAATAATAGCTTTTTATTTGTTTTTCACTGAATTTTGTCTTCTTTGTTTATGCTTGCTTACAAATTTTCTGCAGAAAAATGTAAAATTTGAAAAACCGCTTAAATGAACAACTACGGTCGGCAAAAGTGTGCAAACACCGACTCTCCGTACTTTTGCTGACCGTACTCTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>389 316 184 79 32</canonical_bands>
                <polymorphic_bands>395 389 184 32</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGAACACTCCATACTGC</pcr_primer_p1>
		<pcr_primer_p2>ATCAGTGGAGAGTACGGTCA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGTTATAAATTATTGTTTCTTCTCTAATTTTTTTTTCTTTTCTAGATCCTGTTGATTCTTATGCAAAAAAAATTTAAAATTTGAAAAACCGCTAAAATGAACAACTACGGTCGACAAAAATGTGCAAACACCGACTCTGCGTACATTTGCTGACCGTACTCTCCACTGAT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGAACACTCCATACTGCTCCGGAAACTGCACTTCTTCTAATTAATTTTGTTTTTTTTTCTTTTAAAGTTATAAATTATTGTTTCTTCTCTAATTTTTTTTTCTTTTCTAGATCCTGTTKATTCTTATGCAAAAAAAATTTAAAATTTGAAAAACCGCTAAAATGAACAACTACGGTCGACAAAAATGTGCAAACACCGACTCTGCGTACATTTGCTGACCGTACTCTCCACTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25335</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>83113</contig_pos>
        <strand>+</strand>
        <context>TTGATTTTTT[C/T]AGTTTTYAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTT</left_flank>
        <right_flank>AGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTGGAATGTATCTATGGGGAGCTGAAGAGAACGACAAAATGCGAAAAGGATTATGCGACAATTCGAATGGTTCTGATCGACAAAAGTTCTAGAATGCACTTTCAGAAGTTCAAAATTTGGAAGCCAATTTTTCAGGGTTTTCAGGATTTTCGGAAATGAAGAAGCTGTCGACCTGATTCGAGAAAAATCATGAACGAGGTTTCTAGAAAGACAGAATCCATCCTATTCATTTTCTCTTGGAAAATAGTCCGCAAAATTTGAAAATGGCTGAAAAAGCTGAAAATTTTCAGCCAAACTTCGCTTGAAAAGTTTTTTTAGCACAATTCTTAGCTGGAAATCATGATTTTCTAATTTTTATATACTAAAAATTGGTATAATTTGCCGGTGCACACTTTCGGCGCTAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATGGACTAGAAAATGGTACTAGTCAAATTTCTCAACCAATGTTGGTCTGCAGCGAATGGAGAAGCTTAAAAAACTGAAAATTGTGAACGAAACTTAAGGAAAATTTATGGTTAGACTAACTTTTAAGCT</canonical>
            <polymorphic>CGTGGAATGTATCTATGGGGAGCTGAAGAGAACGACAAAATGCGAAAAGGATTATGCGACAATTCGAATGGTTCTGATCGACAAAAGTTCTAGAATGCACTTTCAGAAGTTCAAAATTTGGAAGCCAATTTTTCAGGGTTTTCAGGATTTTCGGAAATGAAGAAGCTGTCGACCTGATTCGAGAAAAATCATGAACGAGGTTTCTAGAAAGACAGAATCCATCCTATTCATTTTCTCTTGGAAAATAGTCCGCAAAATTTGAAAATGGCTGAAAAAGCTGAAAATTTTCAGCCAAACTTCGCTTGAAAAGTTTTTTTAGCACAATTCTTAGCTGGAAATCATGATTTTCTAATTTTTATATACTAAAAATTGGTATAATTTGCCGGTGCACACTTTCGGCGCTAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTYAGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATGGACTAGAAAATGGTACTAGTCAAATTTCTCAACCAATGTTGGTCTGCAGCGAATGGAGAAGCTTAAAAAACTGAAAATTGTGAACGAAACTTAAGGAAAATTTATGGTTAGACTAACTTTTAAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAATTCTTAGCTGGAAATCAT</pcr_primer_p1>
		<pcr_primer_p2>TTGTGCCAGTAACTTTTTCTAGT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACAATTCTTAGCTGGAAATCATGATTTTCTAATTTTTATATACTAAAAATTGGTATAATTTGCCGGTGCACACTTTCGGCGCTAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAA</canonical_amplicon>
		<polymorphic_amplicon>ACAATTCTTAGCTGGAAATCATGATTTTCTAATTTTTATATACTAAAAATTGGTATAATTTGCCGGTGCACACTTTCGGCGCTAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTYAGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25336</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>83120</contig_pos>
        <strand>+</strand>
        <context>TTTYAGTTTT[C/T]AGATCACRAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTT</left_flank>
        <right_flank>AGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTATCTATGGGGAGCTGAAGAGAACGACAAAATGCGAAAAGGATTATGCGACAATTCGAATGGTTCTGATCGACAAAAGTTCTAGAATGCACTTTCAGAAGTTCAAAATTTGGAAGCCAATTTTTCAGGGTTTTCAGGATTTTCGGAAATGAAGAAGCTGTCGACCTGATTCGAGAAAAATCATGAACGAGGTTTCTAGAAAGACAGAATCCATCCTATTCATTTTCTCTTGGAAAATAGTCCGCAAAATTTGAAAATGGCTGAAAAAGCTGAAAATTTTCAGCCAAACTTCGCTTGAAAAGTTTTTTTAGCACAATTCTTAGCTGGAAATCATGATTTTCTAATTTTTATATACTAAAAATTGGTATAATTTGCCGGTGCACACTTTCGGCGCTAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATGGACTAGAAAATGGTACTAGTCAAATTTCTCAACCAATGTTGGTCTGCAGCGAATGGAGAAGCTTAAAAAACTGAAAATTGTGAACGAAACTTAAGGAAAATTTATGGTTAGACTAACTTTTAAGCTAAAAATC</canonical>
            <polymorphic>TGTATCTATGGGGAGCTGAAGAGAACGACAAAATGCGAAAAGGATTATGCGACAATTCGAATGGTTCTGATCGACAAAAGTTCTAGAATGCACTTTCAGAAGTTCAAAATTTGGAAGCCAATTTTTCAGGGTTTTCAGGATTTTCGGAAATGAAGAAGCTGTCGACCTGATTCGAGAAAAATCATGAACGAGGTTTCTAGAAAGACAGAATCCATCCTATTCATTTTCTCTTGGAAAATAGTCCGCAAAATTTGAAAATGGCTGAAAAAGCTGAAAATTTTCAGCCAAACTTCGCTTGAAAAGTTTTTTTAGCACAATTCTTAGCTGGAAATCATGATTTTCTAATTTTTATATACTAAAAATTGGTATAATTTGCCGGTGCACACTTTCGGCGCTAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTYAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATGGACTAGAAAATGGTACTAGTCAAATTTCTCAACCAATGTTGGTCTGCAGCGAATGGAGAAGCTTAAAAAACTGAAAATTGTGAACGAAACTTAAGGAAAATTTATGGTTAGACTAACTTTTAAGCTAAAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>355 333 166 68 48 30</canonical_bands>
                <polymorphic_bands>688 166 68 48 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAATTCTTAGCTGGAAATCAT</pcr_primer_p1>
		<pcr_primer_p2>TTGTGCCAGTAACTTTTTCTAGT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACAATTCTTAGCTGGAAATCATGATTTTCTAATTTTTATATACTAAAAATTGGTATAATTTGCCGGTGCACACTTTCGGCGCTAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAA</canonical_amplicon>
		<polymorphic_amplicon>ACAATTCTTAGCTGGAAATCATGATTTTCTAATTTTTATATACTAAAAATTGGTATAATTTGCCGGTGCACACTTTCGGCGCTAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTYAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25337</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>83128</contig_pos>
        <strand>+</strand>
        <context>TTYAGATCAC[A/G]AAAATMTGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCAC</left_flank>
        <right_flank>AAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGGGAGCTGAAGAGAACGACAAAATGCGAAAAGGATTATGCGACAATTCGAATGGTTCTGATCGACAAAAGTTCTAGAATGCACTTTCAGAAGTTCAAAATTTGGAAGCCAATTTTTCAGGGTTTTCAGGATTTTCGGAAATGAAGAAGCTGTCGACCTGATTCGAGAAAAATCATGAACGAGGTTTCTAGAAAGACAGAATCCATCCTATTCATTTTCTCTTGGAAAATAGTCCGCAAAATTTGAAAATGGCTGAAAAAGCTGAAAATTTTCAGCCAAACTTCGCTTGAAAAGTTTTTTTAGCACAATTCTTAGCTGGAAATCATGATTTTCTAATTTTTATATACTAAAAATTGGTATAATTTGCCGGTGCACACTTTCGGCGCTAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATGGACTAGAAAATGGTACTAGTCAAATTTCTCAACCAATGTTGGTCTGCAGCGAATGGAGAAGCTTAAAAAACTGAAAATTGTGAACGAAACTTAAGGAAAATTTATGGTTAGACTAACTTTTAAGCTAAAAATCTATTTCAC</canonical>
            <polymorphic>TGGGGAGCTGAAGAGAACGACAAAATGCGAAAAGGATTATGCGACAATTCGAATGGTTCTGATCGACAAAAGTTCTAGAATGCACTTTCAGAAGTTCAAAATTTGGAAGCCAATTTTTCAGGGTTTTCAGGATTTTCGGAAATGAAGAAGCTGTCGACCTGATTCGAGAAAAATCATGAACGAGGTTTCTAGAAAGACAGAATCCATCCTATTCATTTTCTCTTGGAAAATAGTCCGCAAAATTTGAAAATGGCTGAAAAAGCTGAAAATTTTCAGCCAAACTTCGCTTGAAAAGTTTTTTTAGCACAATTCTTAGCTGGAAATCATGATTTTCTAATTTTTATATACTAAAAATTGGTATAATTTGCCGGTGCACACTTTCGGCGCTAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACRAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATGGACTAGAAAATGGTACTAGTCAAATTTCTCAACCAATGTTGGTCTGCAGCGAATGGAGAAGCTTAAAAAACTGAAAATTGTGAACGAAACTTAAGGAAAATTTATGGTTAGACTAACTTTTAAGCTAAAAATCTATTTCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>333 172 170 136 75 53 37 14 10</canonical_bands>
                <polymorphic_bands>505 170 136 75 53 37 14 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAATTCTTAGCTGGAAATCAT</pcr_primer_p1>
		<pcr_primer_p2>TGTTGTGCCAGTAACTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACAATTCTTAGCTGGAAATCATGATTTTCTAATTTTTATATACTAAAAATTGGTATAATTTGCCGGTGCACACTTTCGGCGCTAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACA</canonical_amplicon>
		<polymorphic_amplicon>ACAATTCTTAGCTGGAAATCATGATTTTCTAATTTTTATATACTAAAAATTGGTATAATTTGCCGGTGCACACTTTCGGCGCTAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACRAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25338</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>83134</contig_pos>
        <strand>+</strand>
        <context>TCACRAAAAT[A/C]TGTGAGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAAT</left_flank>
        <right_flank>TGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTGAAGAGAACGACAAAATGCGAAAAGGATTATGCGACAATTCGAATGGTTCTGATCGACAAAAGTTCTAGAATGCACTTTCAGAAGTTCAAAATTTGGAAGCCAATTTTTCAGGGTTTTCAGGATTTTCGGAAATGAAGAAGCTGTCGACCTGATTCGAGAAAAATCATGAACGAGGTTTCTAGAAAGACAGAATCCATCCTATTCATTTTCTCTTGGAAAATAGTCCGCAAAATTTGAAAATGGCTGAAAAAGCTGAAAATTTTCAGCCAAACTTCGCTTGAAAAGTTTTTTTAGCACAATTCTTAGCTGGAAATCATGATTTTCTAATTTTTATATACTAAAAATTGGTATAATTTGCCGGTGCACACTTTCGGCGCTAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATGGACTAGAAAATGGTACTAGTCAAATTTCTCAACCAATGTTGGTCTGCAGCGAATGGAGAAGCTTAAAAAACTGAAAATTGTGAACGAAACTTAAGGAAAATTTATGGTTAGACTAACTTTTAAGCTAAAAATCTATTTCACACATCT</canonical>
            <polymorphic>GCTGAAGAGAACGACAAAATGCGAAAAGGATTATGCGACAATTCGAATGGTTCTGATCGACAAAAGTTCTAGAATGCACTTTCAGAAGTTCAAAATTTGGAAGCCAATTTTTCAGGGTTTTCAGGATTTTCGGAAATGAAGAAGCTGTCGACCTGATTCGAGAAAAATCATGAACGAGGTTTCTAGAAAGACAGAATCCATCCTATTCATTTTCTCTTGGAAAATAGTCCGCAAAATTTGAAAATGGCTGAAAAAGCTGAAAATTTTCAGCCAAACTTCGCTTGAAAAGTTTTTTTAGCACAATTCTTAGCTGGAAATCATGATTTTCTAATTTTTATATACTAAAAATTGGTATAATTTGCCGGTGCACACTTTCGGCGCTAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATMTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATGGACTAGAAAATGGTACTAGTCAAATTTCTCAACCAATGTTGGTCTGCAGCGAATGGAGAAGCTTAAAAAACTGAAAATTGTGAACGAAACTTAAGGAAAATTTATGGTTAGACTAACTTTTAAGCTAAAAATCTATTTCACACATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAAGCGAAATCTTAAAGACAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATCAGTATAACCGCAAGT</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>CTAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTT</canonical_amplicon>
		<polymorphic_amplicon>CTAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATMTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25339</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>83286</contig_pos>
        <strand>+</strand>
        <context>TTTAAGTCAC[C/T]AAAATCGGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCAC</left_flank>
        <right_flank>AAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGATTCGAGAAAAATCATGAACGAGGTTTCTAGAAAGACAGAATCCATCCTATTCATTTTCTCTTGGAAAATAGTCCGCAAAATTTGAAAATGGCTGAAAAAGCTGAAAATTTTCAGCCAAACTTCGCTTGAAAAGTTTTTTTAGCACAATTCTTAGCTGGAAATCATGATTTTCTAATTTTTATATACTAAAAATTGGTATAATTTGCCGGTGCACACTTTCGGCGCTAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATGGACTAGAAAATGGTACTAGTCAAATTTCTCAACCAATGTTGGTCTGCAGCGAATGGAGAAGCTTAAAAAACTGAAAATTGTGAACGAAACTTAAGGAAAATTTATGGTTAGACTAACTTTTAAGCTAAAAATCTATTTCACACATCTTTAAATCATAAAACTCGGTGAAAAATGAGAAAAAAATGACTCAGAACTTGCAGTTTGCACACTTCTGGCGCCAAAAAAATCACAGAACCTAAAACACAGGAAAATGTGAAAATATGCTTCAAACTTAATGAAAACTTCAAACTAGCACAATT</canonical>
            <polymorphic>CTGATTCGAGAAAAATCATGAACGAGGTTTCTAGAAAGACAGAATCCATCCTATTCATTTTCTCTTGGAAAATAGTCCGCAAAATTTGAAAATGGCTGAAAAAGCTGAAAATTTTCAGCCAAACTTCGCTTGAAAAGTTTTTTTAGCACAATTCTTAGCTGGAAATCATGATTTTCTAATTTTTATATACTAAAAATTGGTATAATTTGCCGGTGCACACTTTCGGCGCTAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACYAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATGGACTAGAAAATGGTACTAGTCAAATTTCTCAACCAATGTTGGTCTGCAGCGAATGGAGAAGCTTAAAAAACTGAAAATTGTGAACGAAACTTAAGGAAAATTTATGGTTAGACTAACTTTTAAGCTAAAAATCTATTTCACACATCTTTAAATCATAAAACTCGGTGAAAAATGAGAAAAAAATGACTCAGAACTTGCAGTTTGCACACTTCTGGCGCCAAAAAAATCACAGAACCTAAAACACAGGAAAATGTGAAAATATGCTTCAAACTTAATGAAAACTTCAAACTAGCACAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTAGAAAAAGTTACTGGCACAA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGAAACATTTGTTCACCT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>ACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>ACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACYAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25340</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>83302</contig_pos>
        <strand>+</strand>
        <context>CGGTAAAAAA[A/T]TAGAAAAGRG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAA</left_flank>
        <right_flank>TAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGAACGAGGTTTCTAGAAAGACAGAATCCATCCTATTCATTTTCTCTTGGAAAATAGTCCGCAAAATTTGAAAATGGCTGAAAAAGCTGAAAATTTTCAGCCAAACTTCGCTTGAAAAGTTTTTTTAGCACAATTCTTAGCTGGAAATCATGATTTTCTAATTTTTATATACTAAAAATTGGTATAATTTGCCGGTGCACACTTTCGGCGCTAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATGGACTAGAAAATGGTACTAGTCAAATTTCTCAACCAATGTTGGTCTGCAGCGAATGGAGAAGCTTAAAAAACTGAAAATTGTGAACGAAACTTAAGGAAAATTTATGGTTAGACTAACTTTTAAGCTAAAAATCTATTTCACACATCTTTAAATCATAAAACTCGGTGAAAAATGAGAAAAAAATGACTCAGAACTTGCAGTTTGCACACTTCTGGCGCCAAAAAAATCACAGAACCTAAAACACAGGAAAATGTGAAAATATGCTTCAAACTTAATGAAAACTTCAAACTAGCACAATTTTGACCTGAAAAATCG</canonical>
            <polymorphic>CATGAACGAGGTTTCTAGAAAGACAGAATCCATCCTATTCATTTTCTCTTGGAAAATAGTCCGCAAAATTTGAAAATGGCTGAAAAAGCTGAAAATTTTCAGCCAAACTTCGCTTGAAAAGTTTTTTTAGCACAATTCTTAGCTGGAAATCATGATTTTCTAATTTTTATATACTAAAAATTGGTATAATTTGCCGGTGCACACTTTCGGCGCTAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAAWTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATGGACTAGAAAATGGTACTAGTCAAATTTCTCAACCAATGTTGGTCTGCAGCGAATGGAGAAGCTTAAAAAACTGAAAATTGTGAACGAAACTTAAGGAAAATTTATGGTTAGACTAACTTTTAAGCTAAAAATCTATTTCACACATCTTTAAATCATAAAACTCGGTGAAAAATGAGAAAAAAATGACTCAGAACTTGCAGTTTGCACACTTCTGGCGCCAAAAAAATCACAGAACCTAAAACACAGGAAAATGTGAAAATATGCTTCAAACTTAATGAAAACTTCAAACTAGCACAATTTTGACCTGAAAAATCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>197 107 93 77 70 66 53 51 42 40 28 27 23 20 17 17 17 14 14 9 9 9</canonical_bands>
                <polymorphic_bands>197 135 107 77 70 66 53 51 40 28 27 23 20 17 17 17 14 14 9 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTAGAAAAAGTTACTGGCACAA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGAAACATTTGTTCACCT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>ACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>ACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAAWTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25341</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>83311</contig_pos>
        <strand>+</strand>
        <context>AWTAGAAAAG[A/G]GACACTAGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAG</left_flank>
        <right_flank>GACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTTCTAGAAAGACAGAATCCATCCTATTCATTTTCTCTTGGAAAATAGTCCGCAAAATTTGAAAATGGCTGAAAAAGCTGAAAATTTTCAGCCAAACTTCGCTTGAAAAGTTTTTTTAGCACAATTCTTAGCTGGAAATCATGATTTTCTAATTTTTATATACTAAAAATTGGTATAATTTGCCGGTGCACACTTTCGGCGCTAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATGGACTAGAAAATGGTACTAGTCAAATTTCTCAACCAATGTTGGTCTGCAGCGAATGGAGAAGCTTAAAAAACTGAAAATTGTGAACGAAACTTAAGGAAAATTTATGGTTAGACTAACTTTTAAGCTAAAAATCTATTTCACACATCTTTAAATCATAAAACTCGGTGAAAAATGAGAAAAAAATGACTCAGAACTTGCAGTTTGCACACTTCTGGCGCCAAAAAAATCACAGAACCTAAAACACAGGAAAATGTGAAAATATGCTTCAAACTTAATGAAAACTTCAAACTAGCACAATTTTGACCTGAAAAATCGATTTTTCTA</canonical>
            <polymorphic>GGTTTCTAGAAAGACAGAATCCATCCTATTCATTTTCTCTTGGAAAATAGTCCGCAAAATTTGAAAATGGCTGAAAAAGCTGAAAATTTTCAGCCAAACTTCGCTTGAAAAGTTTTTTTAGCACAATTCTTAGCTGGAAATCATGATTTTCTAATTTTTATATACTAAAAATTGGTATAATTTGCCGGTGCACACTTTCGGCGCTAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGRGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATGGACTAGAAAATGGTACTAGTCAAATTTCTCAACCAATGTTGGTCTGCAGCGAATGGAGAAGCTTAAAAAACTGAAAATTGTGAACGAAACTTAAGGAAAATTTATGGTTAGACTAACTTTTAAGCTAAAAATCTATTTCACACATCTTTAAATCATAAAACTCGGTGAAAAATGAGAAAAAAATGACTCAGAACTTGCAGTTTGCACACTTCTGGCGCCAAAAAAATCACAGAACCTAAAACACAGGAAAATGTGAAAATATGCTTCAAACTTAATGAAAACTTCAAACTAGCACAATTTTGACCTGAAAAATCGATTTTTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>123 109 98 67 59 59 58 40 40 39 39 37 30 28 25 22 22 21 21 14 12 12 12 3 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>123 109 98 67 59 59 58 40 40 39 39 37 31 30 25 22 22 21 21 14 12 12 12 2 2 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 354 115 29</canonical_bands>
                <polymorphic_bands>531 354 115</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>502 469 29</canonical_bands>
                <polymorphic_bands>531 469</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTAGAAAAAGTTACTGGCACAA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGAAACATTTGTTCACCT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>ACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>ACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGRGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25342</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>83352</contig_pos>
        <strand>+</strand>
        <context>CCGGCGCCAA[G/T]CGAAATCTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAA</left_flank>
        <right_flank>CGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAAATAGTCCGCAAAATTTGAAAATGGCTGAAAAAGCTGAAAATTTTCAGCCAAACTTCGCTTGAAAAGTTTTTTTAGCACAATTCTTAGCTGGAAATCATGATTTTCTAATTTTTATATACTAAAAATTGGTATAATTTGCCGGTGCACACTTTCGGCGCTAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATGGACTAGAAAATGGTACTAGTCAAATTTCTCAACCAATGTTGGTCTGCAGCGAATGGAGAAGCTTAAAAAACTGAAAATTGTGAACGAAACTTAAGGAAAATTTATGGTTAGACTAACTTTTAAGCTAAAAATCTATTTCACACATCTTTAAATCATAAAACTCGGTGAAAAATGAGAAAAAAATGACTCAGAACTTGCAGTTTGCACACTTCTGGCGCCAAAAAAATCACAGAACCTAAAACACAGGAAAATGTGAAAATATGCTTCAAACTTAATGAAAACTTCAAACTAGCACAATTTTGACCTGAAAAATCGATTTTTCTAATTCGGAAAACACGAAAATCGGTGGGAAATGAGAAAAATGG</canonical>
            <polymorphic>GGAAAATAGTCCGCAAAATTTGAAAATGGCTGAAAAAGCTGAAAATTTTCAGCCAAACTTCGCTTGAAAAGTTTTTTTAGCACAATTCTTAGCTGGAAATCATGATTTTCTAATTTTTATATACTAAAAATTGGTATAATTTGCCGGTGCACACTTTCGGCGCTAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAKCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATGGACTAGAAAATGGTACTAGTCAAATTTCTCAACCAATGTTGGTCTGCAGCGAATGGAGAAGCTTAAAAAACTGAAAATTGTGAACGAAACTTAAGGAAAATTTATGGTTAGACTAACTTTTAAGCTAAAAATCTATTTCACACATCTTTAAATCATAAAACTCGGTGAAAAATGAGAAAAAAATGACTCAGAACTTGCAGTTTGCACACTTCTGGCGCCAAAAAAATCACAGAACCTAAAACACAGGAAAATGTGAAAATATGCTTCAAACTTAATGAAAACTTCAAACTAGCACAATTTTGACCTGAAAAATCGATTTTTCTAATTCGGAAAACACGAAAATCGGTGGGAAATGAGAAAAATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTTAAAACTCTTGGGAAACTT</pcr_primer_p1>
		<pcr_primer_p2>CGTGATCTGAAAACTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACG</canonical_amplicon>
		<polymorphic_amplicon>ATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAKCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25343</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>83432</contig_pos>
        <strand>+</strand>
        <context>TTTGAGCTGA[A/C]AATTTGATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGA</left_flank>
        <right_flank>AATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACAATTCTTAGCTGGAAATCATGATTTTCTAATTTTTATATACTAAAAATTGGTATAATTTGCCGGTGCACACTTTCGGCGCTAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATGGACTAGAAAATGGTACTAGTCAAATTTCTCAACCAATGTTGGTCTGCAGCGAATGGAGAAGCTTAAAAAACTGAAAATTGTGAACGAAACTTAAGGAAAATTTATGGTTAGACTAACTTTTAAGCTAAAAATCTATTTCACACATCTTTAAATCATAAAACTCGGTGAAAAATGAGAAAAAAATGACTCAGAACTTGCAGTTTGCACACTTCTGGCGCCAAAAAAATCACAGAACCTAAAACACAGGAAAATGTGAAAATATGCTTCAAACTTAATGAAAACTTCAAACTAGCACAATTTTGACCTGAAAAATCGATTTTTCTAATTCGGAAAACACGAAAATCGGTGGGAAATGAGAAAAATGGGCTAGAAACTGGTACCAGCAGAAACTCGCCGGTTAACTTGGTGAGAGAACTTCGAAAAGCTTTAAAAGCTGAAACTCATG</canonical>
            <polymorphic>CACAATTCTTAGCTGGAAATCATGATTTTCTAATTTTTATATACTAAAAATTGGTATAATTTGCCGGTGCACACTTTCGGCGCTAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAMAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATGGACTAGAAAATGGTACTAGTCAAATTTCTCAACCAATGTTGGTCTGCAGCGAATGGAGAAGCTTAAAAAACTGAAAATTGTGAACGAAACTTAAGGAAAATTTATGGTTAGACTAACTTTTAAGCTAAAAATCTATTTCACACATCTTTAAATCATAAAACTCGGTGAAAAATGAGAAAAAAATGACTCAGAACTTGCAGTTTGCACACTTCTGGCGCCAAAAAAATCACAGAACCTAAAACACAGGAAAATGTGAAAATATGCTTCAAACTTAATGAAAACTTCAAACTAGCACAATTTTGACCTGAAAAATCGATTTTTCTAATTCGGAAAACACGAAAATCGGTGGGAAATGAGAAAAATGGGCTAGAAACTGGTACCAGCAGAAACTCGCCGGTTAACTTGGTGAGAGAACTTCGAAAAGCTTTAAAAGCTGAAACTCATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>347 175 167 158 77 76</canonical_bands>
                <polymorphic_bands>347 325 175 77 76</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTGCGGTTATACTGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CATTTTTCTCGTTTCTCACC</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>ACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATG</canonical_amplicon>
		<polymorphic_amplicon>ACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25344</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>83500</contig_pos>
        <strand>+</strand>
        <context>CTAGAAAATG[A/G]TACTAKTCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATGGACTAGAAAATG</left_flank>
        <right_flank>TACTAGTCAAATTTCTCAACCAATGTTGGTCTGCAGCGAATGGAGAAGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCACACTTTCGGCGCTAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATGGACTAGAAAATGGTACTAGTCAAATTTCTCAACCAATGTTGGTCTGCAGCGAATGGAGAAGCTTAAAAAACTGAAAATTGTGAACGAAACTTAAGGAAAATTTATGGTTAGACTAACTTTTAAGCTAAAAATCTATTTCACACATCTTTAAATCATAAAACTCGGTGAAAAATGAGAAAAAAATGACTCAGAACTTGCAGTTTGCACACTTCTGGCGCCAAAAAAATCACAGAACCTAAAACACAGGAAAATGTGAAAATATGCTTCAAACTTAATGAAAACTTCAAACTAGCACAATTTTGACCTGAAAAATCGATTTTTCTAATTCGGAAAACACGAAAATCGGTGGGAAATGAGAAAAATGGGCTAGAAACTGGTACCAGCAGAAACTCGCCGGTTAACTTGGTGAGAGAACTTCGAAAAGCTTTAAAAGCTGAAACTCATGTTTAAACTTATTTGGGAAACTTGTAGTTATACTAATTTTTATTAAAAAATTCATATTTTTGCAGTTTT</canonical>
            <polymorphic>GCACACTTTCGGCGCTAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATGGACTAGAAAATGRTACTAGTCAAATTTCTCAACCAATGTTGGTCTGCAGCGAATGGAGAAGCTTAAAAAACTGAAAATTGTGAACGAAACTTAAGGAAAATTTATGGTTAGACTAACTTTTAAGCTAAAAATCTATTTCACACATCTTTAAATCATAAAACTCGGTGAAAAATGAGAAAAAAATGACTCAGAACTTGCAGTTTGCACACTTCTGGCGCCAAAAAAATCACAGAACCTAAAACACAGGAAAATGTGAAAATATGCTTCAAACTTAATGAAAACTTCAAACTAGCACAATTTTGACCTGAAAAATCGATTTTTCTAATTCGGAAAACACGAAAATCGGTGGGAAATGAGAAAAATGGGCTAGAAACTGGTACCAGCAGAAACTCGCCGGTTAACTTGGTGAGAGAACTTCGAAAAGCTTTAAAAGCTGAAACTCATGTTTAAACTTATTTGGGAAACTTGTAGTTATACTAATTTTTATTAAAAAATTCATATTTTTGCAGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 364 135</canonical_bands>
                <polymorphic_bands>865 135</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTCAAAATTGGTGAAAACA</pcr_primer_p1>
		<pcr_primer_p2>AAGATGTGTGAAATAGATTTTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATGGACTAGAAAATGGTACTAGTCAAATTTCTCAACCAATGTTGGTCTGCAGCGAATGGAGAAGCTTAAAAAACTGAAAATTGTGAACGAAACTTAAGGAAAATTTATGGTTAGACTAACTTTTAAGCTAAAAATCTATTTCACACATCTT</canonical_amplicon>
		<polymorphic_amplicon>GTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATGGACTAGAAAATGRTACTAGTCAAATTTCTCAACCAATGTTGGTCTGCAGCGAATGGAGAAGCTTAAAAAACTGAAAATTGTGAACGAAACTTAAGGAAAATTTATGGTTAGACTAACTTTTAAGCTAAAAATCTATTTCACACATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25345</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>83506</contig_pos>
        <strand>+</strand>
        <context>AATGRTACTA[G/T]TCAAATTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATCACGAAAATCGGTGAGAAACGAGAAAAATGGACTAGAAAATGGTACTA</left_flank>
        <right_flank>TCAAATTTCTCAACCAATGTTGGTCTGCAGCGAATGGAGAAGCTTAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGGCGCTAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATGGACTAGAAAATGGTACTAGTCAAATTTCTCAACCAATGTTGGTCTGCAGCGAATGGAGAAGCTTAAAAAACTGAAAATTGTGAACGAAACTTAAGGAAAATTTATGGTTAGACTAACTTTTAAGCTAAAAATCTATTTCACACATCTTTAAATCATAAAACTCGGTGAAAAATGAGAAAAAAATGACTCAGAACTTGCAGTTTGCACACTTCTGGCGCCAAAAAAATCACAGAACCTAAAACACAGGAAAATGTGAAAATATGCTTCAAACTTAATGAAAACTTCAAACTAGCACAATTTTGACCTGAAAAATCGATTTTTCTAATTCGGAAAACACGAAAATCGGTGGGAAATGAGAAAAATGGGCTAGAAACTGGTACCAGCAGAAACTCGCCGGTTAACTTGGTGAGAGAACTTCGAAAAGCTTTAAAAGCTGAAACTCATGTTTAAACTTATTTGGGAAACTTGTAGTTATACTAATTTTTATTAAAAAATTCATATTTTTGCAGTTTTCAATTA</canonical>
            <polymorphic>TTTCGGCGCTAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATGGACTAGAAAATGGTACTAKTCAAATTTCTCAACCAATGTTGGTCTGCAGCGAATGGAGAAGCTTAAAAAACTGAAAATTGTGAACGAAACTTAAGGAAAATTTATGGTTAGACTAACTTTTAAGCTAAAAATCTATTTCACACATCTTTAAATCATAAAACTCGGTGAAAAATGAGAAAAAAATGACTCAGAACTTGCAGTTTGCACACTTCTGGCGCCAAAAAAATCACAGAACCTAAAACACAGGAAAATGTGAAAATATGCTTCAAACTTAATGAAAACTTCAAACTAGCACAATTTTGACCTGAAAAATCGATTTTTCTAATTCGGAAAACACGAAAATCGGTGGGAAATGAGAAAAATGGGCTAGAAACTGGTACCAGCAGAAACTCGCCGGTTAACTTGGTGAGAGAACTTCGAAAAGCTTTAAAAGCTGAAACTCATGTTTAAACTTATTTGGGAAACTTGTAGTTATACTAATTTTTATTAAAAAATTCATATTTTTGCAGTTTTCAATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACTAGT</site>
                <isoschizomers>
                    <enzyme>AhlI</enzyme>
                    <enzyme>BcuI</enzyme>
                    <enzyme>SpeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>273 174 159 152 151 78 13</canonical_bands>
                <polymorphic_bands>286 174 159 152 151 78</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTCAAAATTGGTGAAAACA</pcr_primer_p1>
		<pcr_primer_p2>AAGATGTGTGAAATAGATTTTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATGGACTAGAAAATGGTACTAGTCAAATTTCTCAACCAATGTTGGTCTGCAGCGAATGGAGAAGCTTAAAAAACTGAAAATTGTGAACGAAACTTAAGGAAAATTTATGGTTAGACTAACTTTTAAGCTAAAAATCTATTTCACACATCTT</canonical_amplicon>
		<polymorphic_amplicon>GTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATGGACTAGAAAATGGTACTAKTCAAATTTCTCAACCAATGTTGGTCTGCAGCGAATGGAGAAGCTTAAAAAACTGAAAATTGTGAACGAAACTTAAGGAAAATTTATGGTTAGACTAACTTTTAAGCTAAAAATCTATTTCACACATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25346</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>83525</contig_pos>
        <strand>+</strand>
        <context>CTCAACCAAT[G/T]TTGGTCTGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACGAGAAAAATGGACTAGAAAATGGTACTAGTCAAATTTCTCAACCAAT</left_flank>
        <right_flank>TTGGTCTGCAGCGAATGGAGAAGCTTAAAAAACTGAAAATTGTGAACGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATGGACTAGAAAATGGTACTAGTCAAATTTCTCAACCAATGTTGGTCTGCAGCGAATGGAGAAGCTTAAAAAACTGAAAATTGTGAACGAAACTTAAGGAAAATTTATGGTTAGACTAACTTTTAAGCTAAAAATCTATTTCACACATCTTTAAATCATAAAACTCGGTGAAAAATGAGAAAAAAATGACTCAGAACTTGCAGTTTGCACACTTCTGGCGCCAAAAAAATCACAGAACCTAAAACACAGGAAAATGTGAAAATATGCTTCAAACTTAATGAAAACTTCAAACTAGCACAATTTTGACCTGAAAAATCGATTTTTCTAATTCGGAAAACACGAAAATCGGTGGGAAATGAGAAAAATGGGCTAGAAACTGGTACCAGCAGAAACTCGCCGGTTAACTTGGTGAGAGAACTTCGAAAAGCTTTAAAAGCTGAAACTCATGTTTAAACTTATTTGGGAAACTTGTAGTTATACTAATTTTTATTAAAAAATTCATATTTTTGCAGTTTTCAATTACAAAAATCGGTGAGAAATG</canonical>
            <polymorphic>CTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATGGACTAGAAAATGGTACTAGTCAAATTTCTCAACCAATKTTGGTCTGCAGCGAATGGAGAAGCTTAAAAAACTGAAAATTGTGAACGAAACTTAAGGAAAATTTATGGTTAGACTAACTTTTAAGCTAAAAATCTATTTCACACATCTTTAAATCATAAAACTCGGTGAAAAATGAGAAAAAAATGACTCAGAACTTGCAGTTTGCACACTTCTGGCGCCAAAAAAATCACAGAACCTAAAACACAGGAAAATGTGAAAATATGCTTCAAACTTAATGAAAACTTCAAACTAGCACAATTTTGACCTGAAAAATCGATTTTTCTAATTCGGAAAACACGAAAATCGGTGGGAAATGAGAAAAATGGGCTAGAAACTGGTACCAGCAGAAACTCGCCGGTTAACTTGGTGAGAGAACTTCGAAAAGCTTTAAAAGCTGAAACTCATGTTTAAACTTATTTGGGAAACTTGTAGTTATACTAATTTTTATTAAAAAATTCATATTTTTGCAGTTTTCAATTACAAAAATCGGTGAGAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTCAAAATTGGTGAAAACA</pcr_primer_p1>
		<pcr_primer_p2>AAGATGTGTGAAATAGATTTTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATGGACTAGAAAATGGTACTAGTCAAATTTCTCAACCAATGTTGGTCTGCAGCGAATGGAGAAGCTTAAAAAACTGAAAATTGTGAACGAAACTTAAGGAAAATTTATGGTTAGACTAACTTTTAAGCTAAAAATCTATTTCACACATCTT</canonical_amplicon>
		<polymorphic_amplicon>GTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCTGTGAGAAAAGAGAAAAATTGACTAGAAAAAGTTACTGGCACAACATCGCCAGTAAGCTTCAAAAGCTGAAAATCATGTTAAAACTCTTGGGAAACTTGCGGTTATACTGATTTTTTACAGAAAATTCTTATTTTTAAACTTTTAAGTCACAAAAATCGGTAAAAAATTAGAAAAGTGACACTAGGACTTGCATTGGTTGCACACTTCCGGCGCCAAGCGAAATCTTAAAGACAAAAAAAGGTGAACAAATGTTTCAAAATTGGTGAAAACAGCGAATTAGACTAATTTTGAGCTGAAAATTTGATTTTTTCAGTTTTCAGATCACGAAAATCGGTGAGAAACGAGAAAAATGGACTAGAAAATGGTACTAGTCAAATTTCTCAACCAATKTTGGTCTGCAGCGAATGGAGAAGCTTAAAAAACTGAAAATTGTGAACGAAACTTAAGGAAAATTTATGGTTAGACTAACTTTTAAGCTAAAAATCTATTTCACACATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25347</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>114807</contig_pos>
        <strand>+</strand>
        <context>TTACGTGGTG[C/T]ATTTTTYAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTAAAAGTGAAAATTGAATTGTTATCAAAATTCAATTGTTACGTGGTG</left_flank>
        <right_flank>ATTTTTCAAACAATTTTTGGCGGATAAAAAAGAGCGAAACATTTGGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTAATTTTCCTAAGCGATTACAGATTGTTACTATTAGTATTAGTCAGTGATTCAGTAACCAAAACACGAGCAAATTGTCAACAATCTTTTTTTCTTGGGGGATTTTTTAGATCAAATAATGCTTTGTGGAAAACTTCAAAGAGTAATTTGATTGAGGTTCATGTGTCTTGAGGGAGGTTTGTAGTTTGGTAGATCAAAACTATTAGATTTTTTGCTCTTGAGCTATGCGGGCGGGACTCATTAAAGGCTCTGATAGTGGCCCACCCAATACTTTAACTTTGAGCTCAATTATCTTGGTTCTTTTAAAAGATATCAAGAATTTCACAACTGATAAATTATTTATCATAATACCACCATTATATTATCAGTTGACAAATTTTTGATATCTCTCATAGGAACCGAGATAATTAGGGTCAAACGGGATGATATTTTAAAGGAGCTACAAAGATATTAAAAGTGAAAATTGAATTGTTATCAAAATTCAATTGTTACGTGGTGAATTTTTCAAACAATTTTTGGCGGATAAAAAAGAGCGAAACATTTGGAAAATTATTAGAAAAACATTTGGAAAATTATTAGAAAAAAATTATTAGAAAAATTCAGGAGCACTGAAGCCTGGAGCCCTGAAGTAAGGAGCTCTGGGGTTAGGAGCCCTCTGGCCGGGAGCCCTGGGTTTAGGAGCAAGGCCAAATGCTGGTTTAGGATCTAAAAACTAGCGTGGTGTTCTGAAGAAATCTACTGTAAAATTGAAGATCGTTTTTTTTTCAATTCCTGGAACTGAAATCAGACAATTCATGCATTCAGAGCGTTCCTGATGGTTCAGACTGAAAATAAGAAGAAACTATGTGATTGATATTACCACCCATTTCTTTGTTGACCACTTTTCAAACCTCTTACAGGAATTGAGAATAAGTGGTTCCAAGTTCACTGTGTTACCGTAGCGTGCACATTAGGCTCAATTATGTCGATTCCTATGAAAGATCTCAAAAAATTTGTCAA</canonical>
            <polymorphic>ACTAATTTTCCTAAGCGATTACAGATTGTTACTATTAGTATTAGTCAGTGATTCAGTAACCAAAACACGAGCAAATTGTCAACAATCTTTTTTTCTTGGGGGATTTTTTAGATCAAATAATGCTTTGTGGAAAACTTCAAAGAGTAATTTGATTGAGGTTCATGTGTCTTGAGGGAGGTTTGTAGTTTGGTAGATCAAAACTATTAGATTTTTTGCTCTTGAGCTATGCGGGCGGGACTCATTAAAGGCTCTGATAGTGGCCCACCCAATACTTTAACTTTGAGCTCAATTATCTTGGTTCTTTTAAAAGATATCAAGAATTTCACAACTGATAAATTATTTATCATAATACCACCATTATATTATCAGTTGACAAATTTTTGATATCTCTCATAGGAACCGAGATAATTAGGGTCAAACGGGATGATATTTTAAAGGAGCTACAAAGATATTAAAAGTGAAAATTGAATTGTTATCAAAATTCAATTGTTACGTGGTGYATTTTTCAAACAATTTTTGGCGGATAAAAAAGAGCGAAACATTTGGAAAATTATTAGAAAAACATTTGGAAAATTATTAGAAAAAAATTATTAGAAAAATTCAGGAGCACTGAAGCCTGGAGCCCTGAAGTAAGGAGCTCTGGGGTTAGGAGCCCTCTGGCCGGGAGCCCTGGGTTTAGGAGCAAGGCCAAATGCTGGTTTAGGATCTAAAAACTAGCGTGGTGTTCTGAAGAAATCTACTGTAAAATTGAAGATCGTTTTTTTTTCAATTCCTGGAACTGAAATCAGACAATTCATGCATTCAGAGCGTTCCTGATGGTTCAGACTGAAAATAAGAAGAAACTATGTGATTGATATTACCACCCATTTCTTTGTTGACCACTTTTCAAACCTCTTACAGGAATTGAGAATAAGTGGTTCCAAGTTCACTGTGTTACCGTAGCGTGCACATTAGGCTCAATTATGTCGATTCCTATGAAAGATCTCAAAAAATTTGTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>393 318 104 98 57 20 10</canonical_bands>
                <polymorphic_bands>393 318 118 104 57 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>148 142 111 72 70 57 56 41 37 32 31 31 23 23 22 16 15 14 12 12 12 10 5 5 3</canonical_bands>
                <polymorphic_bands>148 142 111 72 70 57 56 41 37 32 31 31 27 23 23 22 16 14 12 12 10 5 5 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGCTCTTGAGCTATGC</pcr_primer_p1>
		<pcr_primer_p2>TTTCTAATAATTTTCCAAATGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>351</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGCTCTTGAGCTATGCGGGCGGGACTCATTAAAGGCTCTGATAGTGGCCCACCCAATACTTTAACTTTGAGCTCAATTATCTTGGTTCTTTTAAAAGATATCAAGAATTTCACAACTGATAAATTATTTATCATAATACCACCATTATATTATCAGTTGACAAATTTTTGATATCTCTCATAGGAACCGAGATAATTAGGGTCAAACGGGATGATATTTTAAAGGAGCTACAAAGATATTAAAAGTGAAAATTGAATTGTTATCAAAATTCAATTGTTACGTGGTGAATTTTTCAAACAATTTTTGGCGGATAAAAAAGAGCGAAACATTTGGAAAATTATTAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGCTCTTGAGCTATGCGGGCGGGACTCATTAAAGGCTCTGATAGTGGCCCACCCAATACTTTAACTTTGAGCTCAATTATCTTGGTTCTTTTAAAAGATATCAAGAATTTCACAACTGATAAATTATTTATCATAATACCACCATTATATTATCAGTTGACAAATTTTTGATATCTCTCATAGGAACCGAGATAATTAGGGTCAAACGGGATGATATTTTAAAGGAGCTACAAAGATATTAAAAGTGAAAATTGAATTGTTATCAAAATTCAATTGTTACGTGGTGYATTTTTCAAACAATTTTTGGCGGATAAAAAAGAGCGAAACATTTGGAAAATTATTAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25348</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>114814</contig_pos>
        <strand>+</strand>
        <context>GTGYATTTTT[C/T]AAACAATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTGAAAATTGAATTGTTATCAAAATTCAATTGTTACGTGGTGAATTTTT</left_flank>
        <right_flank>AAACAATTTTTGGCGGATAAAAAAGAGCGAAACATTTGGAAAATTATTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCTAAGCGATTACAGATTGTTACTATTAGTATTAGTCAGTGATTCAGTAACCAAAACACGAGCAAATTGTCAACAATCTTTTTTTCTTGGGGGATTTTTTAGATCAAATAATGCTTTGTGGAAAACTTCAAAGAGTAATTTGATTGAGGTTCATGTGTCTTGAGGGAGGTTTGTAGTTTGGTAGATCAAAACTATTAGATTTTTTGCTCTTGAGCTATGCGGGCGGGACTCATTAAAGGCTCTGATAGTGGCCCACCCAATACTTTAACTTTGAGCTCAATTATCTTGGTTCTTTTAAAAGATATCAAGAATTTCACAACTGATAAATTATTTATCATAATACCACCATTATATTATCAGTTGACAAATTTTTGATATCTCTCATAGGAACCGAGATAATTAGGGTCAAACGGGATGATATTTTAAAGGAGCTACAAAGATATTAAAAGTGAAAATTGAATTGTTATCAAAATTCAATTGTTACGTGGTGAATTTTTCAAACAATTTTTGGCGGATAAAAAAGAGCGAAACATTTGGAAAATTATTAGAAAAACATTTGGAAAATTATTAGAAAAAAATTATTAGAAAAATTCAGGAGCACTGAAGCCTGGAGCCCTGAAGTAAGGAGCTCTGGGGTTAGGAGCCCTCTGGCCGGGAGCCCTGGGTTTAGGAGCAAGGCCAAATGCTGGTTTAGGATCTAAAAACTAGCGTGGTGTTCTGAAGAAATCTACTGTAAAATTGAAGATCGTTTTTTTTTCAATTCCTGGAACTGAAATCAGACAATTCATGCATTCAGAGCGTTCCTGATGGTTCAGACTGAAAATAAGAAGAAACTATGTGATTGATATTACCACCCATTTCTTTGTTGACCACTTTTCAAACCTCTTACAGGAATTGAGAATAAGTGGTTCCAAGTTCACTGTGTTACCGTAGCGTGCACATTAGGCTCAATTATGTCGATTCCTATGAAAGATCTCAAAAAATTTGTCAACTGATAA</canonical>
            <polymorphic>TTCCTAAGCGATTACAGATTGTTACTATTAGTATTAGTCAGTGATTCAGTAACCAAAACACGAGCAAATTGTCAACAATCTTTTTTTCTTGGGGGATTTTTTAGATCAAATAATGCTTTGTGGAAAACTTCAAAGAGTAATTTGATTGAGGTTCATGTGTCTTGAGGGAGGTTTGTAGTTTGGTAGATCAAAACTATTAGATTTTTTGCTCTTGAGCTATGCGGGCGGGACTCATTAAAGGCTCTGATAGTGGCCCACCCAATACTTTAACTTTGAGCTCAATTATCTTGGTTCTTTTAAAAGATATCAAGAATTTCACAACTGATAAATTATTTATCATAATACCACCATTATATTATCAGTTGACAAATTTTTGATATCTCTCATAGGAACCGAGATAATTAGGGTCAAACGGGATGATATTTTAAAGGAGCTACAAAGATATTAAAAGTGAAAATTGAATTGTTATCAAAATTCAATTGTTACGTGGTGAATTTTTYAAACAATTTTTGGCGGATAAAAAAGAGCGAAACATTTGGAAAATTATTAGAAAAACATTTGGAAAATTATTAGAAAAAAATTATTAGAAAAATTCAGGAGCACTGAAGCCTGGAGCCCTGAAGTAAGGAGCTCTGGGGTTAGGAGCCCTCTGGCCGGGAGCCCTGGGTTTAGGAGCAAGGCCAAATGCTGGTTTAGGATCTAAAAACTAGCGTGGTGTTCTGAAGAAATCTACTGTAAAATTGAAGATCGTTTTTTTTTCAATTCCTGGAACTGAAATCAGACAATTCATGCATTCAGAGCGTTCCTGATGGTTCAGACTGAAAATAAGAAGAAACTATGTGATTGATATTACCACCCATTTCTTTGTTGACCACTTTTCAAACCTCTTACAGGAATTGAGAATAAGTGGTTCCAAGTTCACTGTGTTACCGTAGCGTGCACATTAGGCTCAATTATGTCGATTCCTATGAAAGATCTCAAAAAATTTGTCAACTGATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGCTCTTGAGCTATGC</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTCTAATAATTTTCCAAATGT</pcr_primer_p2>
		<pcr_amplicon_size>354</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGCTCTTGAGCTATGCGGGCGGGACTCATTAAAGGCTCTGATAGTGGCCCACCCAATACTTTAACTTTGAGCTCAATTATCTTGGTTCTTTTAAAAGATATCAAGAATTTCACAACTGATAAATTATTTATCATAATACCACCATTATATTATCAGTTGACAAATTTTTGATATCTCTCATAGGAACCGAGATAATTAGGGTCAAACGGGATGATATTTTAAAGGAGCTACAAAGATATTAAAAGTGAAAATTGAATTGTTATCAAAATTCAATTGTTACGTGGTGAATTTTTCAAACAATTTTTGGCGGATAAAAAAGAGCGAAACATTTGGAAAATTATTAGAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGCTCTTGAGCTATGCGGGCGGGACTCATTAAAGGCTCTGATAGTGGCCCACCCAATACTTTAACTTTGAGCTCAATTATCTTGGTTCTTTTAAAAGATATCAAGAATTTCACAACTGATAAATTATTTATCATAATACCACCATTATATTATCAGTTGACAAATTTTTGATATCTCTCATAGGAACCGAGATAATTAGGGTCAAACGGGATGATATTTTAAAGGAGCTACAAAGATATTAAAAGTGAAAATTGAATTGTTATCAAAATTCAATTGTTACGTGGTGAATTTTTYAAACAATTTTTGGCGGATAAAAAAGAGCGAAACATTTGGAAAATTATTAGAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25349</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>117153</contig_pos>
        <strand></strand>
        <context>GATCACAGAA[T/G]CCTGTAAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CCGTATAGAAAAACTGTCAAAGAGTTGTTTGGACACAACGGATCACAGAA</left_flank>
        <right_flank>CCTGTAAGTTGGTTTTAGAAAGCTACAGTTTTGCAAAAATATATTTTCAG</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTATCAGTCTTATGTAGTTCTCGATGGAGTTTTGAAGGTCTGAAGTTTGATAACAGTCGGATAAATGATGAAAACTTTTCAGATCGTTCCTGCTATTGTGCTTCCAATACTGGCTGTTCTATTGATAAGAGAATTGAAGAAGGCAGAAGTTTCCAGAAAGAAAATGTCTGTATCTTCTCAAAGCGCTAACAATTCTGATAACACTTCTAAATTGGTTATCATTATGACAATCACTTGTATTTGTGCTGAAGGACCAATGGGAATAGCATTTGTACTTGAAGGTTTAGTAGATGATGTTCCAAAATTGAGGTTGAAAAAACCACTGGGATAGATAGTCTGTAAATATGGTATTTCAGAGAAATAGTCACCTGGTTCGAGTCAATTATTTACACTTCCGTCATTTTGAACGCAACTACTCACTTTATTGTCTGCCTCAGAGTTTCTACACCGTATAGAAAAACTGTCAAAGAGTTGTTTGGACACAACGGATCACAGAATCCTGTAAGTTGGTTTTAGAAAGCTACAGTTTTGCAAAAATATATTTTCAGATAACAATAACTCCAAAAATCAGTTCAGCAAGTATTGTTACACAGAGACAAGTGGATGCCAGGATAGATGGCTAAACTGATTTATTGTATTCTTGAAGGCTAAAATATGATAATAATTGTAAGAGAAATACAATAAATGTGATACTTTTATTTTAAACTTGTCAAAACTACCATCATCCCAGCAAACAGGCTGGTGGTTTTAAGAACAACTTTTTTTGAAAATCAGCTAGCCAAAACAGATCTAAAATATGTTCGTAATTGAAGGCCCCTTCCACGGGCTTTTTACTGTAGACACCCATGACAGATTCCCATGCGTCTACAAAAACAGGCAAAGATGTGAAGGCAAGTGAAGGAACATGGGAAAATATGAAATTGGGGACGGCGGTCTATCCATGACACGGTCAGGTGGAAGTATGAGTCAGGGAAGCCACGCCTCCCGTGGTCCCATGA</canonical>
            <polymorphic>ATCTATCAGTCTTATGTAGTTCTCGATGGAGTTTTGAAGGTCTGAAGTTTGATAACAGTCGGATAAATGATGAAAACTTTTCAGATCGTTCCTGCTATTGTGCTTCCAATACTGGCTGTTCTATTGATAAGAGAATTGAAGAAGGCAGAAGTTTCCAGAAAGAAAATGTCTGTATCTTCTCAAAGCGCTAACAATTCTGATAACACTTCTAAATTGGTTATCATTATGACAATCACTTGTATTTGTGCTGAAGGACCAATGGGAATAGCATTTGTACTTGAAGGTTTAGTAGATGATGTTCCAAAATTGAGGTTGAAAAAACCACTGGGATAGATAGTCTGTAAATATGGTATTTCAGAGAAATAGTCACCTGGTTCGAGTCAATTATTTACACTTCCGTCATTTTGAACGCAACTACTCACTTTATTGTCTGCCTCAGAGTTTCTACACCGTATAGAAAAACTGTCAAAGAGTTGTTTGGACACAACGGATCACAGAAKCCTGTAAGTTGGTTTTAGAAAGCTACAGTTTTGCAAAAATATATTTTCAGATAACAATAACTCCAAAAATCAGTTCAGCAAGTATTGTTACACAGAGACAAGTGGATGCCAGGATAGATGGCTAAACTGATTTATTGTATTCTTGAAGGCTAAAATATGATAATAATTGTAAGAGAAATACAATAAATGTGATACTTTTATTTTAAACTTGTCAAAACTACCATCATCCCAGCAAACAGGCTGGTGGTTTTAAGAACAACTTTTTTTGAAAATCAGCTAGCCAAAACAGATCTAAAATATGTTCGTAATTGAAGGCCCCTTCCACGGGCTTTTTACTGTAGACACCCATGACAGATTCCCATGCGTCTACAAAAACAGGCAAAGATGTGAAGGCAAGTGAAGGAACATGGGAAAATATGAAATTGGGGACGGCGGTCTATCCATGACACGGTCAGGTGGAAGTATGAGTCAGGGAAGCCACGCCTCCCGTGGTCCCATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>378 357 119 112 34</canonical_bands>
                <polymorphic_bands>476 378 112 34</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>497 357 146</canonical_bands>
                <polymorphic_bands>854 146</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATTTACACTTCCGTCATTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAATCAGTTTAGCCATCTATCCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTATTTACACTTCCGTCATTTTGAACGCAACTACTCACTTTATTGTCTGCCTCAGAGTTTCTACACCGTATAGAAAAACTGTCAAAGAGTTGTTTGGACACAACGGATCACAGAATCCTGTAAGTTGGTTTTAGAAAGCTACAGTTTTGCAAAAATATATTTTCAGATAACAATAACTCCAAAAATCAGTTCAGCAAGTATTGTTACACAGAGACAAGTGGATGCCAGGATAGATGGCTAAACTGATTT</canonical_amplicon>
		<polymorphic_amplicon>TTATTTACACTTCCGTCATTTTGAACGCAACTACTCACTTTATTGTCTGCCTCAGAGTTTCTACACCGTATAGAAAAACTGTCAAAGAGTTGTTTGGACACAACGGATCACAGAAKCCTGTAAGTTGGTTTTAGAAAGCTACAGTTTTGCAAAAATATATTTTCAGATAACAATAACTCCAAAAATCAGTTCAGCAAGTATTGTTACACAGAGACAAGTGGATGCCAGGATAGATGGCTAAACTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25350</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>117316</contig_pos>
        <strand>+</strand>
        <context>AAATATGATA[A/C]TAATTGTAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATAGATGGCTAAACTGATTTATTGTATTCTTGAAGGCTAAAATATGATA</left_flank>
        <right_flank>TAATTGTAAGAGAAATACAATAAATGTGATACTTTTATTTTAAACTTGTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGTCTGTATCTTCTCAAAGCGCTAACAATTCTGATAACACTTCTAAATTGGTTATCATTATGACAATCACTTGTATTTGTGCTGAAGGACCAATGGGAATAGCATTTGTACTTGAAGGTTTAGTAGATGATGTTCCAAAATTGAGGTTGAAAAAACCACTGGGATAGATAGTCTGTAAATATGGTATTTCAGAGAAATAGTCACCTGGTTCGAGTCAATTATTTACACTTCCGTCATTTTGAACGCAACTACTCACTTTATTGTCTGCCTCAGAGTTTCTACACCGTATAGAAAAACTGTCAAAGAGTTGTTTGGACACAACGGATCACAGAATCCTGTAAGTTGGTTTTAGAAAGCTACAGTTTTGCAAAAATATATTTTCAGATAACAATAACTCCAAAAATCAGTTCAGCAAGTATTGTTACACAGAGACAAGTGGATGCCAGGATAGATGGCTAAACTGATTTATTGTATTCTTGAAGGCTAAAATATGATAATAATTGTAAGAGAAATACAATAAATGTGATACTTTTATTTTAAACTTGTCAAAACTACCATCATCCCAGCAAACAGGCTGGTGGTTTTAAGAACAACTTTTTTTGAAAATCAGCTAGCCAAAACAGATCTAAAATATGTTCGTAATTGAAGGCCCCTTCCACGGGCTTTTTACTGTAGACACCCATGACAGATTCCCATGCGTCTACAAAAACAGGCAAAGATGTGAAGGCAAGTGAAGGAACATGGGAAAATATGAAATTGGGGACGGCGGTCTATCCATGACACGGTCAGGTGGAAGTATGAGTCAGGGAAGCCACGCCTCCCGTGGTCCCATGAGAAAATGGTTGGGGAAACAGAGGGATGAGGCACAGCATGATGAGACACACCCTACAAACACGCTTGGTCAGCCGGTTGCGACCGTGTAGCTCAGCAGATGGTAGCGGTACCTTCATCATTTGGATCACAAGCTCAGCCCCTATCGCTCTGTGAGACTGCCATT</canonical>
            <polymorphic>AAATGTCTGTATCTTCTCAAAGCGCTAACAATTCTGATAACACTTCTAAATTGGTTATCATTATGACAATCACTTGTATTTGTGCTGAAGGACCAATGGGAATAGCATTTGTACTTGAAGGTTTAGTAGATGATGTTCCAAAATTGAGGTTGAAAAAACCACTGGGATAGATAGTCTGTAAATATGGTATTTCAGAGAAATAGTCACCTGGTTCGAGTCAATTATTTACACTTCCGTCATTTTGAACGCAACTACTCACTTTATTGTCTGCCTCAGAGTTTCTACACCGTATAGAAAAACTGTCAAAGAGTTGTTTGGACACAACGGATCACAGAATCCTGTAAGTTGGTTTTAGAAAGCTACAGTTTTGCAAAAATATATTTTCAGATAACAATAACTCCAAAAATCAGTTCAGCAAGTATTGTTACACAGAGACAAGTGGATGCCAGGATAGATGGCTAAACTGATTTATTGTATTCTTGAAGGCTAAAATATGATAMTAATTGTAAGAGAAATACAATAAATGTGATACTTTTATTTTAAACTTGTCAAAACTACCATCATCCCAGCAAACAGGCTGGTGGTTTTAAGAACAACTTTTTTTGAAAATCAGCTAGCCAAAACAGATCTAAAATATGTTCGTAATTGAAGGCCCCTTCCACGGGCTTTTTACTGTAGACACCCATGACAGATTCCCATGCGTCTACAAAAACAGGCAAAGATGTGAAGGCAAGTGAAGGAACATGGGAAAATATGAAATTGGGGACGGCGGTCTATCCATGACACGGTCAGGTGGAAGTATGAGTCAGGGAAGCCACGCCTCCCGTGGTCCCATGAGAAAATGGTTGGGGAAACAGAGGGATGAGGCACAGCATGATGAGACACACCCTACAAACACGCTTGGTCAGCCGGTTGCGACCGTGTAGCTCAGCAGATGGTAGCGGTACCTTCATCATTTGGATCACAAGCTCAGCCCCTATCGCTCTGTGAGACTGCCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGATAGATGGCTAAACTGATTT</pcr_primer_p1>
		<pcr_primer_p2>CTGTCATGGGTGTCTACAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AGGATAGATGGCTAAACTGATTTATTGTATTCTTGAAGGCTAAAATATGATAATAATTGTAAGAGAAATACAATAAATGTGATACTTTTATTTTAAACTTGTCAAAACTACCATCATCCCAGCAAACAGGCTGGTGGTTTTAAGAACAACTTTTTTTGAAAATCAGCTAGCCAAAACAGATCTAAAATATGTTCGTAATTGAAGGCCCCTTCCACGGGCTTTTTACTGTAGACACCCATGACAG</canonical_amplicon>
		<polymorphic_amplicon>AGGATAGATGGCTAAACTGATTTATTGTATTCTTGAAGGCTAAAATATGATAMTAATTGTAAGAGAAATACAATAAATGTGATACTTTTATTTTAAACTTGTCAAAACTACCATCATCCCAGCAAACAGGCTGGTGGTTTTAAGAACAACTTTTTTTGAAAATCAGCTAGCCAAAACAGATCTAAAATATGTTCGTAATTGAAGGCCCCTTCCACGGGCTTTTTACTGTAGACACCCATGACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25351</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>117334</contig_pos>
        <strand>+</strand>
        <context>AAGAGAAATA[A/C]AATAAATGTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTATTGTATTCTTGAAGGCTAAAATATGATAATAATTGTAAGAGAAATA</left_flank>
        <right_flank>AATAAATGTGATACTTTTATTTTAAACTTGTCAAAACTACCATCATCCCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGCGCTAACAATTCTGATAACACTTCTAAATTGGTTATCATTATGACAATCACTTGTATTTGTGCTGAAGGACCAATGGGAATAGCATTTGTACTTGAAGGTTTAGTAGATGATGTTCCAAAATTGAGGTTGAAAAAACCACTGGGATAGATAGTCTGTAAATATGGTATTTCAGAGAAATAGTCACCTGGTTCGAGTCAATTATTTACACTTCCGTCATTTTGAACGCAACTACTCACTTTATTGTCTGCCTCAGAGTTTCTACACCGTATAGAAAAACTGTCAAAGAGTTGTTTGGACACAACGGATCACAGAATCCTGTAAGTTGGTTTTAGAAAGCTACAGTTTTGCAAAAATATATTTTCAGATAACAATAACTCCAAAAATCAGTTCAGCAAGTATTGTTACACAGAGACAAGTGGATGCCAGGATAGATGGCTAAACTGATTTATTGTATTCTTGAAGGCTAAAATATGATAATAATTGTAAGAGAAATACAATAAATGTGATACTTTTATTTTAAACTTGTCAAAACTACCATCATCCCAGCAAACAGGCTGGTGGTTTTAAGAACAACTTTTTTTGAAAATCAGCTAGCCAAAACAGATCTAAAATATGTTCGTAATTGAAGGCCCCTTCCACGGGCTTTTTACTGTAGACACCCATGACAGATTCCCATGCGTCTACAAAAACAGGCAAAGATGTGAAGGCAAGTGAAGGAACATGGGAAAATATGAAATTGGGGACGGCGGTCTATCCATGACACGGTCAGGTGGAAGTATGAGTCAGGGAAGCCACGCCTCCCGTGGTCCCATGAGAAAATGGTTGGGGAAACAGAGGGATGAGGCACAGCATGATGAGACACACCCTACAAACACGCTTGGTCAGCCGGTTGCGACCGTGTAGCTCAGCAGATGGTAGCGGTACCTTCATCATTTGGATCACAAGCTCAGCCCCTATCGCTCTGTGAGACTGCCATTAAATGCTCTTTCAAGAGT</canonical>
            <polymorphic>AAAGCGCTAACAATTCTGATAACACTTCTAAATTGGTTATCATTATGACAATCACTTGTATTTGTGCTGAAGGACCAATGGGAATAGCATTTGTACTTGAAGGTTTAGTAGATGATGTTCCAAAATTGAGGTTGAAAAAACCACTGGGATAGATAGTCTGTAAATATGGTATTTCAGAGAAATAGTCACCTGGTTCGAGTCAATTATTTACACTTCCGTCATTTTGAACGCAACTACTCACTTTATTGTCTGCCTCAGAGTTTCTACACCGTATAGAAAAACTGTCAAAGAGTTGTTTGGACACAACGGATCACAGAATCCTGTAAGTTGGTTTTAGAAAGCTACAGTTTTGCAAAAATATATTTTCAGATAACAATAACTCCAAAAATCAGTTCAGCAAGTATTGTTACACAGAGACAAGTGGATGCCAGGATAGATGGCTAAACTGATTTATTGTATTCTTGAAGGCTAAAATATGATAATAATTGTAAGAGAAATAMAATAAATGTGATACTTTTATTTTAAACTTGTCAAAACTACCATCATCCCAGCAAACAGGCTGGTGGTTTTAAGAACAACTTTTTTTGAAAATCAGCTAGCCAAAACAGATCTAAAATATGTTCGTAATTGAAGGCCCCTTCCACGGGCTTTTTACTGTAGACACCCATGACAGATTCCCATGCGTCTACAAAAACAGGCAAAGATGTGAAGGCAAGTGAAGGAACATGGGAAAATATGAAATTGGGGACGGCGGTCTATCCATGACACGGTCAGGTGGAAGTATGAGTCAGGGAAGCCACGCCTCCCGTGGTCCCATGAGAAAATGGTTGGGGAAACAGAGGGATGAGGCACAGCATGATGAGACACACCCTACAAACACGCTTGGTCAGCCGGTTGCGACCGTGTAGCTCAGCAGATGGTAGCGGTACCTTCATCATTTGGATCACAAGCTCAGCCCCTATCGCTCTGTGAGACTGCCATTAAATGCTCTTTCAAGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGATAGATGGCTAAACTGATTT</pcr_primer_p1>
		<pcr_primer_p2>CTGTCATGGGTGTCTACAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AGGATAGATGGCTAAACTGATTTATTGTATTCTTGAAGGCTAAAATATGATAATAATTGTAAGAGAAATACAATAAATGTGATACTTTTATTTTAAACTTGTCAAAACTACCATCATCCCAGCAAACAGGCTGGTGGTTTTAAGAACAACTTTTTTTGAAAATCAGCTAGCCAAAACAGATCTAAAATATGTTCGTAATTGAAGGCCCCTTCCACGGGCTTTTTACTGTAGACACCCATGACAG</canonical_amplicon>
		<polymorphic_amplicon>AGGATAGATGGCTAAACTGATTTATTGTATTCTTGAAGGCTAAAATATGATAATAATTGTAAGAGAAATAMAATAAATGTGATACTTTTATTTTAAACTTGTCAAAACTACCATCATCCCAGCAAACAGGCTGGTGGTTTTAAGAACAACTTTTTTTGAAAATCAGCTAGCCAAAACAGATCTAAAATATGTTCGTAATTGAAGGCCCCTTCCACGGGCTTTTTACTGTAGACACCCATGACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25352</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>117558</contig_pos>
        <strand>+</strand>
        <context>AAGTGAAGGA[A/G]CATGGGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCCCATGCGTCTACAAAAACAGGCAAAGATGTGAAGGCAAGTGAAGGA</left_flank>
        <right_flank>CATGGGAAAATATGAAATTGGGGACGGCGGTCTATCCATGACACGGTCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAACGCAACTACTCACTTTATTGTCTGCCTCAGAGTTTCTACACCGTATAGAAAAACTGTCAAAGAGTTGTTTGGACACAACGGATCACAGAATCCTGTAAGTTGGTTTTAGAAAGCTACAGTTTTGCAAAAATATATTTTCAGATAACAATAACTCCAAAAATCAGTTCAGCAAGTATTGTTACACAGAGACAAGTGGATGCCAGGATAGATGGCTAAACTGATTTATTGTATTCTTGAAGGCTAAAATATGATAATAATTGTAAGAGAAATACAATAAATGTGATACTTTTATTTTAAACTTGTCAAAACTACCATCATCCCAGCAAACAGGCTGGTGGTTTTAAGAACAACTTTTTTTGAAAATCAGCTAGCCAAAACAGATCTAAAATATGTTCGTAATTGAAGGCCCCTTCCACGGGCTTTTTACTGTAGACACCCATGACAGATTCCCATGCGTCTACAAAAACAGGCAAAGATGTGAAGGCAAGTGAAGGAACATGGGAAAATATGAAATTGGGGACGGCGGTCTATCCATGACACGGTCAGGTGGAAGTATGAGTCAGGGAAGCCACGCCTCCCGTGGTCCCATGAGAAAATGGTTGGGGAAACAGAGGGATGAGGCACAGCATGATGAGACACACCCTACAAACACGCTTGGTCAGCCGGTTGCGACCGTGTAGCTCAGCAGATGGTAGCGGTACCTTCATCATTTGGATCACAAGCTCAGCCCCTATCGCTCTGTGAGACTGCCATTAAATGCTCTTTCAAGAGTTGAACTCGTGGCCTCAATCGTAGATGAACAGCGCCACTCCCACCTGAGCTAAGCGGTCGTAAACCTGCCAATGGTCTAGCAAAGCGGCGTTTCACCTTAAACCTTTTGCAGTCCTATAGTCTTTAAAGCTAATTTGAGTTTCTATGCTGTTTAACTTTCTCACTTCTAATCTAACTTTTCGGTAAACCATTCAATTCCATTTTTTACTTTTTCCTACGCCCCAT</canonical>
            <polymorphic>TGAACGCAACTACTCACTTTATTGTCTGCCTCAGAGTTTCTACACCGTATAGAAAAACTGTCAAAGAGTTGTTTGGACACAACGGATCACAGAATCCTGTAAGTTGGTTTTAGAAAGCTACAGTTTTGCAAAAATATATTTTCAGATAACAATAACTCCAAAAATCAGTTCAGCAAGTATTGTTACACAGAGACAAGTGGATGCCAGGATAGATGGCTAAACTGATTTATTGTATTCTTGAAGGCTAAAATATGATAATAATTGTAAGAGAAATACAATAAATGTGATACTTTTATTTTAAACTTGTCAAAACTACCATCATCCCAGCAAACAGGCTGGTGGTTTTAAGAACAACTTTTTTTGAAAATCAGCTAGCCAAAACAGATCTAAAATATGTTCGTAATTGAAGGCCCCTTCCACGGGCTTTTTACTGTAGACACCCATGACAGATTCCCATGCGTCTACAAAAACAGGCAAAGATGTGAAGGCAAGTGAAGGARCATGGGAAAATATGAAATTGGGGACGGCGGTCTATCCATGACACGGTCAGGTGGAAGTATGAGTCAGGGAAGCCACGCCTCCCGTGGTCCCATGAGAAAATGGTTGGGGAAACAGAGGGATGAGGCACAGCATGATGAGACACACCCTACAAACACGCTTGGTCAGCCGGTTGCGACCGTGTAGCTCAGCAGATGGTAGCGGTACCTTCATCATTTGGATCACAAGCTCAGCCCCTATCGCTCTGTGAGACTGCCATTAAATGCTCTTTCAAGAGTTGAACTCGTGGCCTCAATCGTAGATGAACAGCGCCACTCCCACCTGAGCTAAGCGGTCGTAAACCTGCCAATGGTCTAGCAAAGCGGCGTTTCACCTTAAACCTTTTGCAGTCCTATAGTCTTTAAAGCTAATTTGAGTTTCTATGCTGTTTAACTTTCTCACTTCTAATCTAACTTTTCGGTAAACCATTCAATTCCATTTTTTACTTTTTCCTACGCCCCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTGGTTTTAAGAACAACTTT</pcr_primer_p1>
		<pcr_primer_p2>CTGACTCATACTTCCACCTGAC</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>TGGTGGTTTTAAGAACAACTTTTTTTGAAAATCAGCTAGCCAAAACAGATCTAAAATATGTTCGTAATTGAAGGCCCCTTCCACGGGCTTTTTACTGTAGACACCCATGACAGATTCCCATGCGTCTACAAAAACAGGCAAAGATGTGAAGGCAAGTGAAGGAACATGGGAAAATATGAAATTGGGGACGGCGGTCTATCCATGACACGGTCAGGTGGAAGTATGAGTCAG</canonical_amplicon>
		<polymorphic_amplicon>TGGTGGTTTTAAGAACAACTTTTTTTGAAAATCAGCTAGCCAAAACAGATCTAAAATATGTTCGTAATTGAAGGCCCCTTCCACGGGCTTTTTACTGTAGACACCCATGACAGATTCCCATGCGTCTACAAAAACAGGCAAAGATGTGAAGGCAAGTGAAGGARCATGGGAAAATATGAAATTGGGGACGGCGGTCTATCCATGACACGGTCAGGTGGAAGTATGAGTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25353</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>117770</contig_pos>
        <strand>+</strand>
        <context>GTACCTTCAT[C/T]ATTTGGATCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCAGCCGGTTGCGACCGTGTAGCTCAGCAGATGGTAGCGGTACCTTCAT</left_flank>
        <right_flank>ATTTGGATCACAAGCTCAGCCCCTATCGCTCTGTGAGACTGCCATTAAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGCTAAACTGATTTATTGTATTCTTGAAGGCTAAAATATGATAATAATTGTAAGAGAAATACAATAAATGTGATACTTTTATTTTAAACTTGTCAAAACTACCATCATCCCAGCAAACAGGCTGGTGGTTTTAAGAACAACTTTTTTTGAAAATCAGCTAGCCAAAACAGATCTAAAATATGTTCGTAATTGAAGGCCCCTTCCACGGGCTTTTTACTGTAGACACCCATGACAGATTCCCATGCGTCTACAAAAACAGGCAAAGATGTGAAGGCAAGTGAAGGAACATGGGAAAATATGAAATTGGGGACGGCGGTCTATCCATGACACGGTCAGGTGGAAGTATGAGTCAGGGAAGCCACGCCTCCCGTGGTCCCATGAGAAAATGGTTGGGGAAACAGAGGGATGAGGCACAGCATGATGAGACACACCCTACAAACACGCTTGGTCAGCCGGTTGCGACCGTGTAGCTCAGCAGATGGTAGCGGTACCTTCATCATTTGGATCACAAGCTCAGCCCCTATCGCTCTGTGAGACTGCCATTAAATGCTCTTTCAAGAGTTGAACTCGTGGCCTCAATCGTAGATGAACAGCGCCACTCCCACCTGAGCTAAGCGGTCGTAAACCTGCCAATGGTCTAGCAAAGCGGCGTTTCACCTTAAACCTTTTGCAGTCCTATAGTCTTTAAAGCTAATTTGAGTTTCTATGCTGTTTAACTTTCTCACTTCTAATCTAACTTTTCGGTAAACCATTCAATTCCATTTTTTACTTTTTCCTACGCCCCATCTTCCTTTCCCATGCCCCATCTTCCGTCTTCACCACCTCCTCAACACGTGCGCGTTTTCCCACGTCCCTTTAATTTCGTCTTGATGAGGGCGTGGTCCCTTTTTTTCCACCTGTACAAGATAACATAAGACCATATCATTTTTGTGTCCCACTACTTTCTTGTTTTTGACTCATCACTGCAGAATTTGAATTCTTTCCCATAGGCTCCGTCG</canonical>
            <polymorphic>ATGGCTAAACTGATTTATTGTATTCTTGAAGGCTAAAATATGATAATAATTGTAAGAGAAATACAATAAATGTGATACTTTTATTTTAAACTTGTCAAAACTACCATCATCCCAGCAAACAGGCTGGTGGTTTTAAGAACAACTTTTTTTGAAAATCAGCTAGCCAAAACAGATCTAAAATATGTTCGTAATTGAAGGCCCCTTCCACGGGCTTTTTACTGTAGACACCCATGACAGATTCCCATGCGTCTACAAAAACAGGCAAAGATGTGAAGGCAAGTGAAGGAACATGGGAAAATATGAAATTGGGGACGGCGGTCTATCCATGACACGGTCAGGTGGAAGTATGAGTCAGGGAAGCCACGCCTCCCGTGGTCCCATGAGAAAATGGTTGGGGAAACAGAGGGATGAGGCACAGCATGATGAGACACACCCTACAAACACGCTTGGTCAGCCGGTTGCGACCGTGTAGCTCAGCAGATGGTAGCGGTACCTTCATYATTTGGATCACAAGCTCAGCCCCTATCGCTCTGTGAGACTGCCATTAAATGCTCTTTCAAGAGTTGAACTCGTGGCCTCAATCGTAGATGAACAGCGCCACTCCCACCTGAGCTAAGCGGTCGTAAACCTGCCAATGGTCTAGCAAAGCGGCGTTTCACCTTAAACCTTTTGCAGTCCTATAGTCTTTAAAGCTAATTTGAGTTTCTATGCTGTTTAACTTTCTCACTTCTAATCTAACTTTTCGGTAAACCATTCAATTCCATTTTTTACTTTTTCCTACGCCCCATCTTCCTTTCCCATGCCCCATCTTCCGTCTTCACCACCTCCTCAACACGTGCGCGTTTTCCCACGTCCCTTTAATTTCGTCTTGATGAGGGCGTGGTCCCTTTTTTTCCACCTGTACAAGATAACATAAGACCATATCATTTTTGTGTCCCACTACTTTCTTGTTTTTGACTCATCACTGCAGAATTTGAATTCTTTCCCATAGGCTCCGTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAGGTGGAAGTATGAGTCAG</pcr_primer_p1>
		<pcr_primer_p2>TTCAACTCTTGAAAGAGCATTTA</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>GTCAGGTGGAAGTATGAGTCAGGGAAGCCACGCCTCCCGTGGTCCCATGAGAAAATGGTTGGGGAAACAGAGGGATGAGGCACAGCATGATGAGACACACCCTACAAACACGCTTGGTCAGCCGGTTGCGACCGTGTAGCTCAGCAGATGGTAGCGGTACCTTCATCATTTGGATCACAAGCTCAGCCCCTATCGCTCTGTGAGACTGCCATTAAATGCTCTTTCAAGAGTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GTCAGGTGGAAGTATGAGTCAGGGAAGCCACGCCTCCCGTGGTCCCATGAGAAAATGGTTGGGGAAACAGAGGGATGAGGCACAGCATGATGAGACACACCCTACAAACACGCTTGGTCAGCCGGTTGCGACCGTGTAGCTCAGCAGATGGTAGCGGTACCTTCATYATTTGGATCACAAGCTCAGCCCCTATCGCTCTGTGAGACTGCCATTAAATGCTCTTTCAAGAGTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25354</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>132160</contig_pos>
        <strand>+</strand>
        <context>TTTTTTCAAA[C/T]TACGATAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATTTTGGAGCACTTTCCTGTAAGTGAGTAAGACATGAATTTTTTCAAA</left_flank>
        <right_flank>TACGATAATTAATTTTTAGTGCTTGTGCTGCGTTTTTTCGTAGAGTCATC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTTCTACACCACCGCCCAACGCAAGGCTTACTGTGCTTCCACTTGCAAACTTTGCTAGACTTCTTTCTCTTGACAAGACGGGTACTCGACGACGATGATAAATTAGAAGACGAATCTAGCTTAATTTTATTGTCACATTCAATTATGCCTGACCAGCAGAGTATGTCCAATAAATTTTCTTTATCGTCTTTTTCCGATCTTCCAGTCAGAGACCACTCACCAGGTCACACAGACTACACCACCCTGTTTTGATCTTTTTGGTTGTTCTTTGTTTGTCTGCGTATCTTTTTGTACGCAACGCGTCTGTCATACTCGTAGTCATTGATTTTCTAAAATATGTTGTACCTTTTTCTATTGTCCCTCAAAAAACTACACTCGTAGTTTATTGATTTCACAAAATATGTCTAGTATTCTATGCGGTGTTTGTGAACAGACTTCGGATTCTTTCAATTTTGGAGCACTTTCCTGTAAGTGAGTAAGACATGAATTTTTTCAAACTACGATAATTAATTTTTAGTGCTTGTGCTGCGTTTTTTCGTAGAGTCATCGCTTCTAACAGGATTCCAAAAGTACAATGTGATAGAAAATGCGACCTGACAAGTCGAATTTTAAGGCGGTTATGTTCAAATTTCCGTTATCAAAAATGCCTAAAGATTGGGATGGATTCGAAGATGGTTAAATCTGGAAAACCGGAGGAACCGAGTATTCTGGAAGAACTAAAACAATCATATCGAAATCCCGAAGAGCTCAGAAGGCAAACTTTCAAAAATGATGGACAGTCCAAATTGGTGTTTTTTTTGAGGAAATGGATAATTTGTGTAGAATTGATATAAATTTGATAATGGATACTTTGATGAAGACTTTCACGAGGCTGTCTTCTCCAATGCAAAATAATCAACATCGATGTCTAATTTCGAACTTCTTGGGACCTTTTATAATTGTGGATCAGTGTTTTCTATCAGTTGGTGAGTTGAGTATTTCGTGGTCTGTATCCATCG</canonical>
            <polymorphic>ACCTTCTACACCACCGCCCAACGCAAGGCTTACTGTGCTTCCACTTGCAAACTTTGCTAGACTTCTTTCTCTTGACAAGACGGGTACTCGACGACGATGATAAATTAGAAGACGAATCTAGCTTAATTTTATTGTCACATTCAATTATGCCTGACCAGCAGAGTATGTCCAATAAATTTTCTTTATCGTCTTTTTCCGATCTTCCAGTCAGAGACCACTCACCAGGTCACACAGACTACACCACCCTGTTTTGATCTTTTTGGTTGTTCTTTGTTTGTCTGCGTATCTTTTTGTACGCAACGCGTCTGTCATACTCGTAGTCATTGATTTTCTAAAATATGTTGTACCTTTTTCTATTGTCCCTCAAAAAACTACACTCGTAGTTTATTGATTTCACAAAATATGTCTAGTATTCTATGCGGTGTTTGTGAACAGACTTCGGATTCTTTCAATTTTGGAGCACTTTCCTGTAAGTGAGTAAGACATGAATTTTTTCAAAYTACGATAATTAATTTTTAGTGCTTGTGCTGCGTTTTTTCGTAGAGTCATCGCTTCTAACAGGATTCCAAAAGTACAATGTGATAGAAAATGCGACCTGACAAGTCGAATTTTAAGGCGGTTATGTTCAAATTTCCGTTATCAAAAATGCCTAAAGATTGGGATGGATTCGAAGATGGTTAAATCTGGAAAACCGGAGGAACCGAGTATTCTGGAAGAACTAAAACAATCATATCGAAATCCCGAAGAGCTCAGAAGGCAAACTTTCAAAAATGATGGACAGTCCAAATTGGTGTTTTTTTTGAGGAAATGGATAATTTGTGTAGAATTGATATAAATTTGATAATGGATACTTTGATGAAGACTTTCACGAGGCTGTCTTCTCCAATGCAAAATAATCAACATCGATGTCTAATTTCGAACTTCTTGGGACCTTTTATAATTGTGGATCAGTGTTTTCTATCAGTTGGTGAGTTGAGTATTTCGTGGTCTGTATCCATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGTATTCTATGCGGTGTTTGT</pcr_primer_p1>
		<pcr_primer_p2>CAATCTTTAGGCATTTTTGATAA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CTAGTATTCTATGCGGTGTTTGTGAACAGACTTCGGATTCTTTCAATTTTGGAGCACTTTCCTGTAAGTGAGTAAGACATGAATTTTTTCAAACTACGATAATTAATTTTTAGTGCTTGTGCTGCGTTTTTTCGTAGAGTCATCGCTTCTAACAGGATTCCAAAAGTACAATGTGATAGAAAATGCGACCTGACAAGTCGAATTTTAAGGCGGTTATGTTCAAATTTCCGTTATCAAAAATGCCTAAAGATTG</canonical_amplicon>
		<polymorphic_amplicon>CTAGTATTCTATGCGGTGTTTGTGAACAGACTTCGGATTCTTTCAATTTTGGAGCACTTTCCTGTAAGTGAGTAAGACATGAATTTTTTCAAAYTACGATAATTAATTTTTAGTGCTTGTGCTGCGTTTTTTCGTAGAGTCATCGCTTCTAACAGGATTCCAAAAGTACAATGTGATAGAAAATGCGACCTGACAAGTCGAATTTTAAGGCGGTTATGTTCAAATTTCCGTTATCAAAAATGCCTAAAGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25355</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>132454</contig_pos>
        <strand>+</strand>
        <context>CAAATTGGTG[A/G]TTTTTTTGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGAGCTCAGAAGGCAAACTTTCAAAAATGATGGACAGTCCAAATTGGTG</left_flank>
        <right_flank>TTTTTTTGAGGAAATGGATAATTTGTGTAGAATTGATATAAATTTGATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGCAACGCGTCTGTCATACTCGTAGTCATTGATTTTCTAAAATATGTTGTACCTTTTTCTATTGTCCCTCAAAAAACTACACTCGTAGTTTATTGATTTCACAAAATATGTCTAGTATTCTATGCGGTGTTTGTGAACAGACTTCGGATTCTTTCAATTTTGGAGCACTTTCCTGTAAGTGAGTAAGACATGAATTTTTTCAAACTACGATAATTAATTTTTAGTGCTTGTGCTGCGTTTTTTCGTAGAGTCATCGCTTCTAACAGGATTCCAAAAGTACAATGTGATAGAAAATGCGACCTGACAAGTCGAATTTTAAGGCGGTTATGTTCAAATTTCCGTTATCAAAAATGCCTAAAGATTGGGATGGATTCGAAGATGGTTAAATCTGGAAAACCGGAGGAACCGAGTATTCTGGAAGAACTAAAACAATCATATCGAAATCCCGAAGAGCTCAGAAGGCAAACTTTCAAAAATGATGGACAGTCCAAATTGGTGTTTTTTTTGAGGAAATGGATAATTTGTGTAGAATTGATATAAATTTGATAATGGATACTTTGATGAAGACTTTCACGAGGCTGTCTTCTCCAATGCAAAATAATCAACATCGATGTCTAATTTCGAACTTCTTGGGACCTTTTATAATTGTGGATCAGTGTTTTCTATCAGTTGGTGAGTTGAGTATTTCGTGGTCTGTATCCATCGAAAATTCAAAAAGCTGTATCTTGGCTCTTAGAAAAGCTAGAAACTTGAAATTTAGGCAAAAAAGTGTAGATCTTTTACTATAAGTTTGTTCCTCATGACATTTTACATGTTTCTGTCTAAATTTTGAGTTTCTAGCTCGTCTAGGAGCCAAAATATGGCTATTCGAAGTTTTGAAGGCTAGAAACGTAGCGTGTCTCGTCGTCTGCGCCTCTAGCCTACAAAATTTCAAACAGCCGTATCTTGGCTCTTAGATGAGCTAGATACTCAAAATTTAGATAGAAATCTGTAAATCTT</canonical>
            <polymorphic>ACGCAACGCGTCTGTCATACTCGTAGTCATTGATTTTCTAAAATATGTTGTACCTTTTTCTATTGTCCCTCAAAAAACTACACTCGTAGTTTATTGATTTCACAAAATATGTCTAGTATTCTATGCGGTGTTTGTGAACAGACTTCGGATTCTTTCAATTTTGGAGCACTTTCCTGTAAGTGAGTAAGACATGAATTTTTTCAAACTACGATAATTAATTTTTAGTGCTTGTGCTGCGTTTTTTCGTAGAGTCATCGCTTCTAACAGGATTCCAAAAGTACAATGTGATAGAAAATGCGACCTGACAAGTCGAATTTTAAGGCGGTTATGTTCAAATTTCCGTTATCAAAAATGCCTAAAGATTGGGATGGATTCGAAGATGGTTAAATCTGGAAAACCGGAGGAACCGAGTATTCTGGAAGAACTAAAACAATCATATCGAAATCCCGAAGAGCTCAGAAGGCAAACTTTCAAAAATGATGGACAGTCCAAATTGGTGRTTTTTTTGAGGAAATGGATAATTTGTGTAGAATTGATATAAATTTGATAATGGATACTTTGATGAAGACTTTCACGAGGCTGTCTTCTCCAATGCAAAATAATCAACATCGATGTCTAATTTCGAACTTCTTGGGACCTTTTATAATTGTGGATCAGTGTTTTCTATCAGTTGGTGAGTTGAGTATTTCGTGGTCTGTATCCATCGAAAATTCAAAAAGCTGTATCTTGGCTCTTAGAAAAGCTAGAAACTTGAAATTTAGGCAAAAAAGTGTAGATCTTTTACTATAAGTTTGTTCCTCATGACATTTTACATGTTTCTGTCTAAATTTTGAGTTTCTAGCTCGTCTAGGAGCCAAAATATGGCTATTCGAAGTTTTGAAGGCTAGAAACGTAGCGTGTCTCGTCGTCTGCGCCTCTAGCCTACAAAATTTCAAACAGCCGTATCTTGGCTCTTAGATGAGCTAGATACTCAAAATTTAGATAGAAATCTGTAAATCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTATGTTCAAATTTCCGTTATC</pcr_primer_p1>
		<pcr_primer_p2>TGAAAGTCTTCATCAAAGTATCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTATGTTCAAATTTCCGTTATCAAAAATGCCTAAAGATTGGGATGGATTCGAAGATGGTTAAATCTGGAAAACCGGAGGAACCGAGTATTCTGGAAGAACTAAAACAATCATATCGAAATCCCGAAGAGCTCAGAAGGCAAACTTTCAAAAATGATGGACAGTCCAAATTGGTGTTTTTTTTGAGGAAATGGATAATTTGTGTAGAATTGATATAAATTTGATAATGGATACTTTGATGAAGACTTTCA</canonical_amplicon>
		<polymorphic_amplicon>GTTATGTTCAAATTTCCGTTATCAAAAATGCCTAAAGATTGGGATGGATTCGAAGATGGTTAAATCTGGAAAACCGGAGGAACCGAGTATTCTGGAAGAACTAAAACAATCATATCGAAATCCCGAAGAGCTCAGAAGGCAAACTTTCAAAAATGATGGACAGTCCAAATTGGTGRTTTTTTTGAGGAAATGGATAATTTGTGTAGAATTGATATAAATTTGATAATGGATACTTTGATGAAGACTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25356</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>132471</contig_pos>
        <strand></strand>
        <context>TGAGGAAATG[G/A]ATAATTTGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACTTTCAAAAATGATGGACAGTCCAAATTGGTGTTTTTTTTGAGGAAATG</left_flank>
        <right_flank>ATAATTTGTGTAGAATTGATATAAATTTGATAATGGATACTTTGATGAAG</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTCGTAGTCATTGATTTTCTAAAATATGTTGTACCTTTTTCTATTGTCCCTCAAAAAACTACACTCGTAGTTTATTGATTTCACAAAATATGTCTAGTATTCTATGCGGTGTTTGTGAACAGACTTCGGATTCTTTCAATTTTGGAGCACTTTCCTGTAAGTGAGTAAGACATGAATTTTTTCAAACTACGATAATTAATTTTTAGTGCTTGTGCTGCGTTTTTTCGTAGAGTCATCGCTTCTAACAGGATTCCAAAAGTACAATGTGATAGAAAATGCGACCTGACAAGTCGAATTTTAAGGCGGTTATGTTCAAATTTCCGTTATCAAAAATGCCTAAAGATTGGGATGGATTCGAAGATGGTTAAATCTGGAAAACCGGAGGAACCGAGTATTCTGGAAGAACTAAAACAATCATATCGAAATCCCGAAGAGCTCAGAAGGCAAACTTTCAAAAATGATGGACAGTCCAAATTGGTGTTTTTTTTGAGGAAATGGATAATTTGTGTAGAATTGATATAAATTTGATAATGGATACTTTGATGAAGACTTTCACGAGGCTGTCTTCTCCAATGCAAAATAATCAACATCGATGTCTAATTTCGAACTTCTTGGGACCTTTTATAATTGTGGATCAGTGTTTTCTATCAGTTGGTGAGTTGAGTATTTCGTGGTCTGTATCCATCGAAAATTCAAAAAGCTGTATCTTGGCTCTTAGAAAAGCTAGAAACTTGAAATTTAGGCAAAAAAGTGTAGATCTTTTACTATAAGTTTGTTCCTCATGACATTTTACATGTTTCTGTCTAAATTTTGAGTTTCTAGCTCGTCTAGGAGCCAAAATATGGCTATTCGAAGTTTTGAAGGCTAGAAACGTAGCGTGTCTCGTCGTCTGCGCCTCTAGCCTACAAAATTTCAAACAGCCGTATCTTGGCTCTTAGATGAGCTAGATACTCAAAATTTAGATAGAAATCTGTAAATCTTGAGAGGAACAAATTGGT</canonical>
            <polymorphic>TACTCGTAGTCATTGATTTTCTAAAATATGTTGTACCTTTTTCTATTGTCCCTCAAAAAACTACACTCGTAGTTTATTGATTTCACAAAATATGTCTAGTATTCTATGCGGTGTTTGTGAACAGACTTCGGATTCTTTCAATTTTGGAGCACTTTCCTGTAAGTGAGTAAGACATGAATTTTTTCAAACTACGATAATTAATTTTTAGTGCTTGTGCTGCGTTTTTTCGTAGAGTCATCGCTTCTAACAGGATTCCAAAAGTACAATGTGATAGAAAATGCGACCTGACAAGTCGAATTTTAAGGCGGTTATGTTCAAATTTCCGTTATCAAAAATGCCTAAAGATTGGGATGGATTCGAAGATGGTTAAATCTGGAAAACCGGAGGAACCGAGTATTCTGGAAGAACTAAAACAATCATATCGAAATCCCGAAGAGCTCAGAAGGCAAACTTTCAAAAATGATGGACAGTCCAAATTGGTGTTTTTTTTGAGGAAATGRATAATTTGTGTAGAATTGATATAAATTTGATAATGGATACTTTGATGAAGACTTTCACGAGGCTGTCTTCTCCAATGCAAAATAATCAACATCGATGTCTAATTTCGAACTTCTTGGGACCTTTTATAATTGTGGATCAGTGTTTTCTATCAGTTGGTGAGTTGAGTATTTCGTGGTCTGTATCCATCGAAAATTCAAAAAGCTGTATCTTGGCTCTTAGAAAAGCTAGAAACTTGAAATTTAGGCAAAAAAGTGTAGATCTTTTACTATAAGTTTGTTCCTCATGACATTTTACATGTTTCTGTCTAAATTTTGAGTTTCTAGCTCGTCTAGGAGCCAAAATATGGCTATTCGAAGTTTTGAAGGCTAGAAACGTAGCGTGTCTCGTCGTCTGCGCCTCTAGCCTACAAAATTTCAAACAGCCGTATCTTGGCTCTTAGATGAGCTAGATACTCAAAATTTAGATAGAAATCTGTAAATCTTGAGAGGAACAAATTGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTATGTTCAAATTTCCGTTATC</pcr_primer_p1>
		<pcr_primer_p2>TGAAAGTCTTCATCAAAGTATCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTATGTTCAAATTTCCGTTATCAAAAATGCCTAAAGATTGGGATGGATTCGAAGATGGTTAAATCTGGAAAACCGGAGGAACCGAGTATTCTGGAAGAACTAAAACAATCATATCGAAATCCCGAAGAGCTCAGAAGGCAAACTTTCAAAAATGATGGACAGTCCAAATTGGTGTTTTTTTTGAGGAAATGGATAATTTGTGTAGAATTGATATAAATTTGATAATGGATACTTTGATGAAGACTTTCA</canonical_amplicon>
		<polymorphic_amplicon>GTTATGTTCAAATTTCCGTTATCAAAAATGCCTAAAGATTGGGATGGATTCGAAGATGGTTAAATCTGGAAAACCGGAGGAACCGAGTATTCTGGAAGAACTAAAACAATCATATCGAAATCCCGAAGAGCTCAGAAGGCAAACTTTCAAAAATGATGGACAGTCCAAATTGGTGTTTTTTTTGAGGAAATGRATAATTTGTGTAGAATTGATATAAATTTGATAATGGATACTTTGATGAAGACTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25357</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>132539</contig_pos>
        <strand>+</strand>
        <context>CGAGGCTGTC[C/T]TCTCCAATGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATATAAATTTGATAATGGATACTTTGATGAAGACTTTCACGAGGCTGTC</left_flank>
        <right_flank>TCTCCAATGCAAAATAATCAACATCGATGTCTAATTTCGAACTTCTTGGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAGTTTATTGATTTCACAAAATATGTCTAGTATTCTATGCGGTGTTTGTGAACAGACTTCGGATTCTTTCAATTTTGGAGCACTTTCCTGTAAGTGAGTAAGACATGAATTTTTTCAAACTACGATAATTAATTTTTAGTGCTTGTGCTGCGTTTTTTCGTAGAGTCATCGCTTCTAACAGGATTCCAAAAGTACAATGTGATAGAAAATGCGACCTGACAAGTCGAATTTTAAGGCGGTTATGTTCAAATTTCCGTTATCAAAAATGCCTAAAGATTGGGATGGATTCGAAGATGGTTAAATCTGGAAAACCGGAGGAACCGAGTATTCTGGAAGAACTAAAACAATCATATCGAAATCCCGAAGAGCTCAGAAGGCAAACTTTCAAAAATGATGGACAGTCCAAATTGGTGTTTTTTTTGAGGAAATGGATAATTTGTGTAGAATTGATATAAATTTGATAATGGATACTTTGATGAAGACTTTCACGAGGCTGTCTTCTCCAATGCAAAATAATCAACATCGATGTCTAATTTCGAACTTCTTGGGACCTTTTATAATTGTGGATCAGTGTTTTCTATCAGTTGGTGAGTTGAGTATTTCGTGGTCTGTATCCATCGAAAATTCAAAAAGCTGTATCTTGGCTCTTAGAAAAGCTAGAAACTTGAAATTTAGGCAAAAAAGTGTAGATCTTTTACTATAAGTTTGTTCCTCATGACATTTTACATGTTTCTGTCTAAATTTTGAGTTTCTAGCTCGTCTAGGAGCCAAAATATGGCTATTCGAAGTTTTGAAGGCTAGAAACGTAGCGTGTCTCGTCGTCTGCGCCTCTAGCCTACAAAATTTCAAACAGCCGTATCTTGGCTCTTAGATGAGCTAGATACTCAAAATTTAGATAGAAATCTGTAAATCTTGAGAGGAACAAATTGGTGTCGTGAGGAGCAAAACCTCTGAAGTTGGCAAGGGTAGAGACACAGTGAGCATTGTTGTCTGCTGCTC</canonical>
            <polymorphic>GTAGTTTATTGATTTCACAAAATATGTCTAGTATTCTATGCGGTGTTTGTGAACAGACTTCGGATTCTTTCAATTTTGGAGCACTTTCCTGTAAGTGAGTAAGACATGAATTTTTTCAAACTACGATAATTAATTTTTAGTGCTTGTGCTGCGTTTTTTCGTAGAGTCATCGCTTCTAACAGGATTCCAAAAGTACAATGTGATAGAAAATGCGACCTGACAAGTCGAATTTTAAGGCGGTTATGTTCAAATTTCCGTTATCAAAAATGCCTAAAGATTGGGATGGATTCGAAGATGGTTAAATCTGGAAAACCGGAGGAACCGAGTATTCTGGAAGAACTAAAACAATCATATCGAAATCCCGAAGAGCTCAGAAGGCAAACTTTCAAAAATGATGGACAGTCCAAATTGGTGTTTTTTTTGAGGAAATGGATAATTTGTGTAGAATTGATATAAATTTGATAATGGATACTTTGATGAAGACTTTCACGAGGCTGTCYTCTCCAATGCAAAATAATCAACATCGATGTCTAATTTCGAACTTCTTGGGACCTTTTATAATTGTGGATCAGTGTTTTCTATCAGTTGGTGAGTTGAGTATTTCGTGGTCTGTATCCATCGAAAATTCAAAAAGCTGTATCTTGGCTCTTAGAAAAGCTAGAAACTTGAAATTTAGGCAAAAAAGTGTAGATCTTTTACTATAAGTTTGTTCCTCATGACATTTTACATGTTTCTGTCTAAATTTTGAGTTTCTAGCTCGTCTAGGAGCCAAAATATGGCTATTCGAAGTTTTGAAGGCTAGAAACGTAGCGTGTCTCGTCGTCTGCGCCTCTAGCCTACAAAATTTCAAACAGCCGTATCTTGGCTCTTAGATGAGCTAGATACTCAAAATTTAGATAGAAATCTGTAAATCTTGAGAGGAACAAATTGGTGTCGTGAGGAGCAAAACCTCTGAAGTTGGCAAGGGTAGAGACACAGTGAGCATTGTTGTCTGCTGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGTATTCTGGAAGAACTAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTGATCCACAATTATAAAAGGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGAGTATTCTGGAAGAACTAAAACAATCATATCGAAATCCCGAAGAGCTCAGAAGGCAAACTTTCAAAAATGATGGACAGTCCAAATTGGTGTTTTTTTTGAGGAAATGGATAATTTGTGTAGAATTGATATAAATTTGATAATGGATACTTTGATGAAGACTTTCACGAGGCTGTCTTCTCCAATGCAAAATAATCAACATCGATGTCTAATTTCGAACTTCTTGGGACCTTTTATAATTGTGGATCAG</canonical_amplicon>
		<polymorphic_amplicon>CGAGTATTCTGGAAGAACTAAAACAATCATATCGAAATCCCGAAGAGCTCAGAAGGCAAACTTTCAAAAATGATGGACAGTCCAAATTGGTGTTTTTTTTGAGGAAATGGATAATTTGTGTAGAATTGATATAAATTTGATAATGGATACTTTGATGAAGACTTTCACGAGGCTGTCYTCTCCAATGCAAAATAATCAACATCGATGTCTAATTTCGAACTTCTTGGGACCTTTTATAATTGTGGATCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25358</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>165825</contig_pos>
        <strand></strand>
        <context>gacaacgttt[T/C]gtcatctttc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATAAAATATTTGTGACGTTATGATAAGCAATTTATCAGTTGACAACGTTT</left_flank>
        <right_flank>GTCATCTTTCACAGAAACTGAGAAATATTAGCTCAAAGTTAGATGTTGGG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAATGAAAAGGTATTTTTAATCTGAATTCGGAAAATGACATTTTTGTTGTTCGAAAAAAGAAAACTTTTACGTTTTTGTAACTTTGAGATATTTTTATAACTTTGAGTTTTTGTAACTTTGAGATAGGGTTTTCAAATTTTTGGTTTCTTATATATTGACTCCTAGGAACGCGATAATTCGAGTTTCGAAAAAAAAAATAAAATAAGAAGAAAATAATGTTATCAAAACAAAGTTATCACTATAAAAATATCCACAATTGTGTTTCTGAAAACAATTTTCATTGTTTTTTTGAATTTTCATGATTATTGGTCTTATCAGTGCCAAAAACAAGTTAAGCAAAAAACATTGAAGTTTTAAAATAGCTTAATGTAGTTCACCTATCCAACGAGTACATTTCAGCTAGTTTTTCGGCTCTTCCATGCAAAATATCAAGAATGTGTCAATTGATAAAATATTTGTGACGTTATGATAAGCAATTTATCAGTTGACAACGTTTTGTCATCTTTCACAGAAACTGAGAAATATTAGCTCAAAGTTAGATGTTGGGAGATCCTTCTATTACAGGTTTCACGATATGTGTGGTGCGGATTTTAGCAAGTTGATAAAATTACATAACATTTATTATTCTTGAAAAATAATCACATTTATGAGATAACTCAAATTTTGGTAATGGTCCAATTCATCTTCCGACTATCTGATCGGTTACAATCTACAACTTTAGATTCTTTCTTCTTTCGCATTGTCCAAAAAACTAGAACTGCTTCAATGGCACATCCGAATAGTTTTGTAACTCCTCCATACGGACCGATATTCTGTTTAAAAATGTTTAAAGGAAAACGATAATTGATTACCTGGAAACTGAAAAATTGAGTTGTCGAAAACTGTCTTGCAATGATATTTGGCAGAAAATGAAATATAAAAACAATGGATGACTCAATAAGTGCAAGACGATTGACCTGAAAGTTTCAGATTCTTCATGATCGAAAAATAGAATTAA</canonical>
            <polymorphic>GGAAATGAAAAGGTATTTTTAATCTGAATTCGGAAAATGACATTTTTGTTGTTCGAAAAAAGAAAACTTTTACGTTTTTGTAACTTTGAGATATTTTTATAACTTTGAGTTTTTGTAACTTTGAGATAGGGTTTTCAAATTTTTGGTTTCTTATATATTGACTCCTAGGAACGCGATAATTCGAGTTTCGAAAAAAAAAATAAAATAAGAAGAAAATAATGTTATCAAAACAAAGTTATCACTATAAAAATATCCACAATTGTGTTTCTGAAAACAATTTTCATTGTTTTTTTGAATTTTCATGATTATTGGTCTTATCAGTGCCAAAAACAAGTTAAGCAAAAAACATTGAAGTTTTAAAATAGCTTAATGTAGTTCACCTATCCAACGAGTACATTTCAGCTAGTTTTTCGGCTCTTCCATGCAAAATATCAAGAATGTGTCAATTGATAAAATATTTGTGACGTTATGATAAGCAATTTATCAGTTGACAACGTTTYGTCATCTTTCACAGAAACTGAGAAATATTAGCTCAAAGTTAGATGTTGGGAGATCCTTCTATTACAGGTTTCACGATATGTGTGGTGCGGATTTTAGCAAGTTGATAAAATTACATAACATTTATTATTCTTGAAAAATAATCACATTTATGAGATAACTCAAATTTTGGTAATGGTCCAATTCATCTTCCGACTATCTGATCGGTTACAATCTACAACTTTAGATTCTTTCTTCTTTCGCATTGTCCAAAAAACTAGAACTGCTTCAATGGCACATCCGAATAGTTTTGTAACTCCTCCATACGGACCGATATTCTGTTTAAAAATGTTTAAAGGAAAACGATAATTGATTACCTGGAAACTGAAAAATTGAGTTGTCGAAAACTGTCTTGCAATGATATTTGGCAGAAAATGAAATATAAAAACAATGGATGACTCAATAAGTGCAAGACGATTGACCTGAAAGTTTCAGATTCTTCATGATCGAAAAATAGAATTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGTTCACCTATCCAACGAGTA</pcr_primer_p1>
		<pcr_primer_p2>GAATTGGACCATTACCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>313</pcr_amplicon_size>
		<canonical_amplicon>GTAGTTCACCTATCCAACGAGTACATTTCAGCTAGTTTTTCGGCTCTTCCATGCAAAATATCAAGAATGTGTCAATTGATAAAATATTTGTGACGTTATGATAAGCAATTTATCAGTTGACAACGTTTTGTCATCTTTCACAGAAACTGAGAAATATTAGCTCAAAGTTAGATGTTGGGAGATCCTTCTATTACAGGTTTCACGATATGTGTGGTGCGGATTTTAGCAAGTTGATAAAATTACATAACATTTATTATTCTTGAAAAATAATCACATTTATGAGATAACTCAAATTTTGGTAATGGTCCAATTC</canonical_amplicon>
		<polymorphic_amplicon>GTAGTTCACCTATCCAACGAGTACATTTCAGCTAGTTTTTCGGCTCTTCCATGCAAAATATCAAGAATGTGTCAATTGATAAAATATTTGTGACGTTATGATAAGCAATTTATCAGTTGACAACGTTTYGTCATCTTTCACAGAAACTGAGAAATATTAGCTCAAAGTTAGATGTTGGGAGATCCTTCTATTACAGGTTTCACGATATGTGTGGTGCGGATTTTAGCAAGTTGATAAAATTACATAACATTTATTATTCTTGAAAAATAATCACATTTATGAGATAACTCAAATTTTGGTAATGGTCCAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25359</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>165844</contig_pos>
        <strand></strand>
        <context>tcacagaaac[T/C]gagaaawatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATGATAAGCAATTTATCAGTTGACAACGTTTTGTCATCTTTCACAGAAAC</left_flank>
        <right_flank>GAGAAATATTAGCTCAAAGTTAGATGTTGGGAGATCCTTCTATTACAGGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATCTGAATTCGGAAAATGACATTTTTGTTGTTCGAAAAAAGAAAACTTTTACGTTTTTGTAACTTTGAGATATTTTTATAACTTTGAGTTTTTGTAACTTTGAGATAGGGTTTTCAAATTTTTGGTTTCTTATATATTGACTCCTAGGAACGCGATAATTCGAGTTTCGAAAAAAAAAATAAAATAAGAAGAAAATAATGTTATCAAAACAAAGTTATCACTATAAAAATATCCACAATTGTGTTTCTGAAAACAATTTTCATTGTTTTTTTGAATTTTCATGATTATTGGTCTTATCAGTGCCAAAAACAAGTTAAGCAAAAAACATTGAAGTTTTAAAATAGCTTAATGTAGTTCACCTATCCAACGAGTACATTTCAGCTAGTTTTTCGGCTCTTCCATGCAAAATATCAAGAATGTGTCAATTGATAAAATATTTGTGACGTTATGATAAGCAATTTATCAGTTGACAACGTTTTGTCATCTTTCACAGAAACTGAGAAATATTAGCTCAAAGTTAGATGTTGGGAGATCCTTCTATTACAGGTTTCACGATATGTGTGGTGCGGATTTTAGCAAGTTGATAAAATTACATAACATTTATTATTCTTGAAAAATAATCACATTTATGAGATAACTCAAATTTTGGTAATGGTCCAATTCATCTTCCGACTATCTGATCGGTTACAATCTACAACTTTAGATTCTTTCTTCTTTCGCATTGTCCAAAAAACTAGAACTGCTTCAATGGCACATCCGAATAGTTTTGTAACTCCTCCATACGGACCGATATTCTGTTTAAAAATGTTTAAAGGAAAACGATAATTGATTACCTGGAAACTGAAAAATTGAGTTGTCGAAAACTGTCTTGCAATGATATTTGGCAGAAAATGAAATATAAAAACAATGGATGACTCAATAAGTGCAAGACGATTGACCTGAAAGTTTCAGATTCTTCATGATCGAAAAATAGAATTAAGCTCACTCTTGTAAGTTTG</canonical>
            <polymorphic>TAATCTGAATTCGGAAAATGACATTTTTGTTGTTCGAAAAAAGAAAACTTTTACGTTTTTGTAACTTTGAGATATTTTTATAACTTTGAGTTTTTGTAACTTTGAGATAGGGTTTTCAAATTTTTGGTTTCTTATATATTGACTCCTAGGAACGCGATAATTCGAGTTTCGAAAAAAAAAATAAAATAAGAAGAAAATAATGTTATCAAAACAAAGTTATCACTATAAAAATATCCACAATTGTGTTTCTGAAAACAATTTTCATTGTTTTTTTGAATTTTCATGATTATTGGTCTTATCAGTGCCAAAAACAAGTTAAGCAAAAAACATTGAAGTTTTAAAATAGCTTAATGTAGTTCACCTATCCAACGAGTACATTTCAGCTAGTTTTTCGGCTCTTCCATGCAAAATATCAAGAATGTGTCAATTGATAAAATATTTGTGACGTTATGATAAGCAATTTATCAGTTGACAACGTTTTGTCATCTTTCACAGAAACYGAGAAATATTAGCTCAAAGTTAGATGTTGGGAGATCCTTCTATTACAGGTTTCACGATATGTGTGGTGCGGATTTTAGCAAGTTGATAAAATTACATAACATTTATTATTCTTGAAAAATAATCACATTTATGAGATAACTCAAATTTTGGTAATGGTCCAATTCATCTTCCGACTATCTGATCGGTTACAATCTACAACTTTAGATTCTTTCTTCTTTCGCATTGTCCAAAAAACTAGAACTGCTTCAATGGCACATCCGAATAGTTTTGTAACTCCTCCATACGGACCGATATTCTGTTTAAAAATGTTTAAAGGAAAACGATAATTGATTACCTGGAAACTGAAAAATTGAGTTGTCGAAAACTGTCTTGCAATGATATTTGGCAGAAAATGAAATATAAAAACAATGGATGACTCAATAAGTGCAAGACGATTGACCTGAAAGTTTCAGATTCTTCATGATCGAAAAATAGAATTAAGCTCACTCTTGTAAGTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAGNNNCTG</site>
                <isoschizomers>
                    <enzyme>AlwNI</enzyme>
                    <enzyme>CaiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGTTCACCTATCCAACGAGTA</pcr_primer_p1>
		<pcr_primer_p2>GAATTGGACCATTACCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>313</pcr_amplicon_size>
		<canonical_amplicon>GTAGTTCACCTATCCAACGAGTACATTTCAGCTAGTTTTTCGGCTCTTCCATGCAAAATATCAAGAATGTGTCAATTGATAAAATATTTGTGACGTTATGATAAGCAATTTATCAGTTGACAACGTTTTGTCATCTTTCACAGAAACTGAGAAATATTAGCTCAAAGTTAGATGTTGGGAGATCCTTCTATTACAGGTTTCACGATATGTGTGGTGCGGATTTTAGCAAGTTGATAAAATTACATAACATTTATTATTCTTGAAAAATAATCACATTTATGAGATAACTCAAATTTTGGTAATGGTCCAATTC</canonical_amplicon>
		<polymorphic_amplicon>GTAGTTCACCTATCCAACGAGTACATTTCAGCTAGTTTTTCGGCTCTTCCATGCAAAATATCAAGAATGTGTCAATTGATAAAATATTTGTGACGTTATGATAAGCAATTTATCAGTTGACAACGTTTTGTCATCTTTCACAGAAACYGAGAAATATTAGCTCAAAGTTAGATGTTGGGAGATCCTTCTATTACAGGTTTCACGATATGTGTGGTGCGGATTTTAGCAAGTTGATAAAATTACATAACATTTATTATTCTTGAAAAATAATCACATTTATGAGATAACTCAAATTTTGGTAATGGTCCAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25360</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>165851</contig_pos>
        <strand></strand>
        <context>aacygagaaa[T/A]attagctcaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GCAATTTATCAGTTGACAACGTTTTGTCATCTTTCACAGAAACTGAGAAA</left_flank>
        <right_flank>ATTAGCTCAAAGTTAGATGTTGGGAGATCCTTCTATTACAGGTTTCACGA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTCGGAAAATGACATTTTTGTTGTTCGAAAAAAGAAAACTTTTACGTTTTTGTAACTTTGAGATATTTTTATAACTTTGAGTTTTTGTAACTTTGAGATAGGGTTTTCAAATTTTTGGTTTCTTATATATTGACTCCTAGGAACGCGATAATTCGAGTTTCGAAAAAAAAAATAAAATAAGAAGAAAATAATGTTATCAAAACAAAGTTATCACTATAAAAATATCCACAATTGTGTTTCTGAAAACAATTTTCATTGTTTTTTTGAATTTTCATGATTATTGGTCTTATCAGTGCCAAAAACAAGTTAAGCAAAAAACATTGAAGTTTTAAAATAGCTTAATGTAGTTCACCTATCCAACGAGTACATTTCAGCTAGTTTTTCGGCTCTTCCATGCAAAATATCAAGAATGTGTCAATTGATAAAATATTTGTGACGTTATGATAAGCAATTTATCAGTTGACAACGTTTTGTCATCTTTCACAGAAACTGAGAAATATTAGCTCAAAGTTAGATGTTGGGAGATCCTTCTATTACAGGTTTCACGATATGTGTGGTGCGGATTTTAGCAAGTTGATAAAATTACATAACATTTATTATTCTTGAAAAATAATCACATTTATGAGATAACTCAAATTTTGGTAATGGTCCAATTCATCTTCCGACTATCTGATCGGTTACAATCTACAACTTTAGATTCTTTCTTCTTTCGCATTGTCCAAAAAACTAGAACTGCTTCAATGGCACATCCGAATAGTTTTGTAACTCCTCCATACGGACCGATATTCTGTTTAAAAATGTTTAAAGGAAAACGATAATTGATTACCTGGAAACTGAAAAATTGAGTTGTCGAAAACTGTCTTGCAATGATATTTGGCAGAAAATGAAATATAAAAACAATGGATGACTCAATAAGTGCAAGACGATTGACCTGAAAGTTTCAGATTCTTCATGATCGAAAAATAGAATTAAGCTCACTCTTGTAAGTTTGAATCCTT</canonical>
            <polymorphic>AATTCGGAAAATGACATTTTTGTTGTTCGAAAAAAGAAAACTTTTACGTTTTTGTAACTTTGAGATATTTTTATAACTTTGAGTTTTTGTAACTTTGAGATAGGGTTTTCAAATTTTTGGTTTCTTATATATTGACTCCTAGGAACGCGATAATTCGAGTTTCGAAAAAAAAAATAAAATAAGAAGAAAATAATGTTATCAAAACAAAGTTATCACTATAAAAATATCCACAATTGTGTTTCTGAAAACAATTTTCATTGTTTTTTTGAATTTTCATGATTATTGGTCTTATCAGTGCCAAAAACAAGTTAAGCAAAAAACATTGAAGTTTTAAAATAGCTTAATGTAGTTCACCTATCCAACGAGTACATTTCAGCTAGTTTTTCGGCTCTTCCATGCAAAATATCAAGAATGTGTCAATTGATAAAATATTTGTGACGTTATGATAAGCAATTTATCAGTTGACAACGTTTTGTCATCTTTCACAGAAACTGAGAAAWATTAGCTCAAAGTTAGATGTTGGGAGATCCTTCTATTACAGGTTTCACGATATGTGTGGTGCGGATTTTAGCAAGTTGATAAAATTACATAACATTTATTATTCTTGAAAAATAATCACATTTATGAGATAACTCAAATTTTGGTAATGGTCCAATTCATCTTCCGACTATCTGATCGGTTACAATCTACAACTTTAGATTCTTTCTTCTTTCGCATTGTCCAAAAAACTAGAACTGCTTCAATGGCACATCCGAATAGTTTTGTAACTCCTCCATACGGACCGATATTCTGTTTAAAAATGTTTAAAGGAAAACGATAATTGATTACCTGGAAACTGAAAAATTGAGTTGTCGAAAACTGTCTTGCAATGATATTTGGCAGAAAATGAAATATAAAAACAATGGATGACTCAATAAGTGCAAGACGATTGACCTGAAAGTTTCAGATTCTTCATGATCGAAAAATAGAATTAAGCTCACTCTTGTAAGTTTGAATCCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 430 70</canonical_bands>
                <polymorphic_bands>570 430</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGTTCACCTATCCAACGAGTA</pcr_primer_p1>
		<pcr_primer_p2>GAATTGGACCATTACCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>313</pcr_amplicon_size>
		<canonical_amplicon>GTAGTTCACCTATCCAACGAGTACATTTCAGCTAGTTTTTCGGCTCTTCCATGCAAAATATCAAGAATGTGTCAATTGATAAAATATTTGTGACGTTATGATAAGCAATTTATCAGTTGACAACGTTTTGTCATCTTTCACAGAAACTGAGAAATATTAGCTCAAAGTTAGATGTTGGGAGATCCTTCTATTACAGGTTTCACGATATGTGTGGTGCGGATTTTAGCAAGTTGATAAAATTACATAACATTTATTATTCTTGAAAAATAATCACATTTATGAGATAACTCAAATTTTGGTAATGGTCCAATTC</canonical_amplicon>
		<polymorphic_amplicon>GTAGTTCACCTATCCAACGAGTACATTTCAGCTAGTTTTTCGGCTCTTCCATGCAAAATATCAAGAATGTGTCAATTGATAAAATATTTGTGACGTTATGATAAGCAATTTATCAGTTGACAACGTTTTGTCATCTTTCACAGAAACTGAGAAAWATTAGCTCAAAGTTAGATGTTGGGAGATCCTTCTATTACAGGTTTCACGATATGTGTGGTGCGGATTTTAGCAAGTTGATAAAATTACATAACATTTATTATTCTTGAAAAATAATCACATTTATGAGATAACTCAAATTTTGGTAATGGTCCAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25361</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>165953</contig_pos>
        <strand>+</strand>
        <context>ACATTTATTA[C/T]TCTTGAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGTGTGGTGCGGATTTTAGCAAGTTGATAAAATTACATAACATTTATTA</left_flank>
        <right_flank>TCTTGAAAAATAATCACATTTATGAGATAACTCAAATTTTGGTAATGGTC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGTTTTCAAATTTTTGGTTTCTTATATATTGACTCCTAGGAACGCGATAATTCGAGTTTCGAAAAAAAAAATAAAATAAGAAGAAAATAATGTTATCAAAACAAAGTTATCACTATAAAAATATCCACAATTGTGTTTCTGAAAACAATTTTCATTGTTTTTTTGAATTTTCATGATTATTGGTCTTATCAGTGCCAAAAACAAGTTAAGCAAAAAACATTGAAGTTTTAAAATAGCTTAATGTAGTTCACCTATCCAACGAGTACATTTCAGCTAGTTTTTCGGCTCTTCCATGCAAAATATCAAGAATGTGTCAATTGATAAAATATTTGTGACGTTATGATAAGCAATTTATCAGTTGACAACGTTTTGTCATCTTTCACAGAAACTGAGAAATATTAGCTCAAAGTTAGATGTTGGGAGATCCTTCTATTACAGGTTTCACGATATGTGTGGTGCGGATTTTAGCAAGTTGATAAAATTACATAACATTTATTATTCTTGAAAAATAATCACATTTATGAGATAACTCAAATTTTGGTAATGGTCCAATTCATCTTCCGACTATCTGATCGGTTACAATCTACAACTTTAGATTCTTTCTTCTTTCGCATTGTCCAAAAAACTAGAACTGCTTCAATGGCACATCCGAATAGTTTTGTAACTCCTCCATACGGACCGATATTCTGTTTAAAAATGTTTAAAGGAAAACGATAATTGATTACCTGGAAACTGAAAAATTGAGTTGTCGAAAACTGTCTTGCAATGATATTTGGCAGAAAATGAAATATAAAAACAATGGATGACTCAATAAGTGCAAGACGATTGACCTGAAAGTTTCAGATTCTTCATGATCGAAAAATAGAATTAAGCTCACTCTTGTAAGTTTGAATCCTTCAGTTTTCATCATATTGTTAATGATAAACAGTTTGATACATAATAGCGAAGAAAATATAAAAGTCAATGCGAAAACTGTCTGAAAAAAATATAGAATCTGTA</canonical>
            <polymorphic>GGGTTTTCAAATTTTTGGTTTCTTATATATTGACTCCTAGGAACGCGATAATTCGAGTTTCGAAAAAAAAAATAAAATAAGAAGAAAATAATGTTATCAAAACAAAGTTATCACTATAAAAATATCCACAATTGTGTTTCTGAAAACAATTTTCATTGTTTTTTTGAATTTTCATGATTATTGGTCTTATCAGTGCCAAAAACAAGTTAAGCAAAAAACATTGAAGTTTTAAAATAGCTTAATGTAGTTCACCTATCCAACGAGTACATTTCAGCTAGTTTTTCGGCTCTTCCATGCAAAATATCAAGAATGTGTCAATTGATAAAATATTTGTGACGTTATGATAAGCAATTTATCAGTTGACAACGTTTTGTCATCTTTCACAGAAACTGAGAAATATTAGCTCAAAGTTAGATGTTGGGAGATCCTTCTATTACAGGTTTCACGATATGTGTGGTGCGGATTTTAGCAAGTTGATAAAATTACATAACATTTATTAYTCTTGAAAAATAATCACATTTATGAGATAACTCAAATTTTGGTAATGGTCCAATTCATCTTCCGACTATCTGATCGGTTACAATCTACAACTTTAGATTCTTTCTTCTTTCGCATTGTCCAAAAAACTAGAACTGCTTCAATGGCACATCCGAATAGTTTTGTAACTCCTCCATACGGACCGATATTCTGTTTAAAAATGTTTAAAGGAAAACGATAATTGATTACCTGGAAACTGAAAAATTGAGTTGTCGAAAACTGTCTTGCAATGATATTTGGCAGAAAATGAAATATAAAAACAATGGATGACTCAATAAGTGCAAGACGATTGACCTGAAAGTTTCAGATTCTTCATGATCGAAAAATAGAATTAAGCTCACTCTTGTAAGTTTGAATCCTTCAGTTTTCATCATATTGTTAATGATAAACAGTTTGATACATAATAGCGAAGAAAATATAAAAGTCAATGCGAAAACTGTCTGAAAAAAATATAGAATCTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGTTCACCTATCCAACGAGTA</pcr_primer_p1>
		<pcr_primer_p2>GAATTGGACCATTACCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>313</pcr_amplicon_size>
		<canonical_amplicon>GTAGTTCACCTATCCAACGAGTACATTTCAGCTAGTTTTTCGGCTCTTCCATGCAAAATATCAAGAATGTGTCAATTGATAAAATATTTGTGACGTTATGATAAGCAATTTATCAGTTGACAACGTTTTGTCATCTTTCACAGAAACTGAGAAATATTAGCTCAAAGTTAGATGTTGGGAGATCCTTCTATTACAGGTTTCACGATATGTGTGGTGCGGATTTTAGCAAGTTGATAAAATTACATAACATTTATTATTCTTGAAAAATAATCACATTTATGAGATAACTCAAATTTTGGTAATGGTCCAATTC</canonical_amplicon>
		<polymorphic_amplicon>GTAGTTCACCTATCCAACGAGTACATTTCAGCTAGTTTTTCGGCTCTTCCATGCAAAATATCAAGAATGTGTCAATTGATAAAATATTTGTGACGTTATGATAAGCAATTTATCAGTTGACAACGTTTTGTCATCTTTCACAGAAACTGAGAAATATTAGCTCAAAGTTAGATGTTGGGAGATCCTTCTATTACAGGTTTCACGATATGTGTGGTGCGGATTTTAGCAAGTTGATAAAATTACATAACATTTATTAYTCTTGAAAAATAATCACATTTATGAGATAACTCAAATTTTGGTAATGGTCCAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25362</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>165979</contig_pos>
        <strand>+</strand>
        <context>ACATTTATGA[A/G]ATAACTCAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATAAAATTACATAACATTTATTATTCTTGAAAAATAATCACATTTATGA</left_flank>
        <right_flank>ATAACTCAAATTTTGGTAATGGTCCAATTCATCTTCCGACTATCTGATCG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATTGACTCCTAGGAACGCGATAATTCGAGTTTCGAAAAAAAAAATAAAATAAGAAGAAAATAATGTTATCAAAACAAAGTTATCACTATAAAAATATCCACAATTGTGTTTCTGAAAACAATTTTCATTGTTTTTTTGAATTTTCATGATTATTGGTCTTATCAGTGCCAAAAACAAGTTAAGCAAAAAACATTGAAGTTTTAAAATAGCTTAATGTAGTTCACCTATCCAACGAGTACATTTCAGCTAGTTTTTCGGCTCTTCCATGCAAAATATCAAGAATGTGTCAATTGATAAAATATTTGTGACGTTATGATAAGCAATTTATCAGTTGACAACGTTTTGTCATCTTTCACAGAAACTGAGAAATATTAGCTCAAAGTTAGATGTTGGGAGATCCTTCTATTACAGGTTTCACGATATGTGTGGTGCGGATTTTAGCAAGTTGATAAAATTACATAACATTTATTATTCTTGAAAAATAATCACATTTATGAGATAACTCAAATTTTGGTAATGGTCCAATTCATCTTCCGACTATCTGATCGGTTACAATCTACAACTTTAGATTCTTTCTTCTTTCGCATTGTCCAAAAAACTAGAACTGCTTCAATGGCACATCCGAATAGTTTTGTAACTCCTCCATACGGACCGATATTCTGTTTAAAAATGTTTAAAGGAAAACGATAATTGATTACCTGGAAACTGAAAAATTGAGTTGTCGAAAACTGTCTTGCAATGATATTTGGCAGAAAATGAAATATAAAAACAATGGATGACTCAATAAGTGCAAGACGATTGACCTGAAAGTTTCAGATTCTTCATGATCGAAAAATAGAATTAAGCTCACTCTTGTAAGTTTGAATCCTTCAGTTTTCATCATATTGTTAATGATAAACAGTTTGATACATAATAGCGAAGAAAATATAAAAGTCAATGCGAAAACTGTCTGAAAAAAATATAGAATCTGTACTCGAAAATTCTTAAAGGATCATACC</canonical>
            <polymorphic>ATATTGACTCCTAGGAACGCGATAATTCGAGTTTCGAAAAAAAAAATAAAATAAGAAGAAAATAATGTTATCAAAACAAAGTTATCACTATAAAAATATCCACAATTGTGTTTCTGAAAACAATTTTCATTGTTTTTTTGAATTTTCATGATTATTGGTCTTATCAGTGCCAAAAACAAGTTAAGCAAAAAACATTGAAGTTTTAAAATAGCTTAATGTAGTTCACCTATCCAACGAGTACATTTCAGCTAGTTTTTCGGCTCTTCCATGCAAAATATCAAGAATGTGTCAATTGATAAAATATTTGTGACGTTATGATAAGCAATTTATCAGTTGACAACGTTTTGTCATCTTTCACAGAAACTGAGAAATATTAGCTCAAAGTTAGATGTTGGGAGATCCTTCTATTACAGGTTTCACGATATGTGTGGTGCGGATTTTAGCAAGTTGATAAAATTACATAACATTTATTATTCTTGAAAAATAATCACATTTATGARATAACTCAAATTTTGGTAATGGTCCAATTCATCTTCCGACTATCTGATCGGTTACAATCTACAACTTTAGATTCTTTCTTCTTTCGCATTGTCCAAAAAACTAGAACTGCTTCAATGGCACATCCGAATAGTTTTGTAACTCCTCCATACGGACCGATATTCTGTTTAAAAATGTTTAAAGGAAAACGATAATTGATTACCTGGAAACTGAAAAATTGAGTTGTCGAAAACTGTCTTGCAATGATATTTGGCAGAAAATGAAATATAAAAACAATGGATGACTCAATAAGTGCAAGACGATTGACCTGAAAGTTTCAGATTCTTCATGATCGAAAAATAGAATTAAGCTCACTCTTGTAAGTTTGAATCCTTCAGTTTTCATCATATTGTTAATGATAAACAGTTTGATACATAATAGCGAAGAAAATATAAAAGTCAATGCGAAAACTGTCTGAAAAAAATATAGAATCTGTACTCGAAAATTCTTAAAGGATCATACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGTTCACCTATCCAACGAGTA</pcr_primer_p1>
		<pcr_primer_p2>TAGATTGTAACCGATCAGATAGTC</pcr_primer_p2>
		<pcr_amplicon_size>344</pcr_amplicon_size>
		<canonical_amplicon>GTAGTTCACCTATCCAACGAGTACATTTCAGCTAGTTTTTCGGCTCTTCCATGCAAAATATCAAGAATGTGTCAATTGATAAAATATTTGTGACGTTATGATAAGCAATTTATCAGTTGACAACGTTTTGTCATCTTTCACAGAAACTGAGAAATATTAGCTCAAAGTTAGATGTTGGGAGATCCTTCTATTACAGGTTTCACGATATGTGTGGTGCGGATTTTAGCAAGTTGATAAAATTACATAACATTTATTATTCTTGAAAAATAATCACATTTATGAGATAACTCAAATTTTGGTAATGGTCCAATTCATCTTCCGACTATCTGATCGGTTACAATCTA</canonical_amplicon>
		<polymorphic_amplicon>GTAGTTCACCTATCCAACGAGTACATTTCAGCTAGTTTTTCGGCTCTTCCATGCAAAATATCAAGAATGTGTCAATTGATAAAATATTTGTGACGTTATGATAAGCAATTTATCAGTTGACAACGTTTTGTCATCTTTCACAGAAACTGAGAAATATTAGCTCAAAGTTAGATGTTGGGAGATCCTTCTATTACAGGTTTCACGATATGTGTGGTGCGGATTTTAGCAAGTTGATAAAATTACATAACATTTATTATTCTTGAAAAATAATCACATTTATGARATAACTCAAATTTTGGTAATGGTCCAATTCATCTTCCGACTATCTGATCGGTTACAATCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25363</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>166089</contig_pos>
        <strand>+</strand>
        <context>ACTAGAACTG[A/C]TTCAATGGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TACAACTTTAGATTCTTTCTTCTTTCGCATTGTCCAAAAAACTAGAACTG</left_flank>
        <right_flank>TTCAATGGCACATCCGAATAGTTTTGTAACTCCTCCATACGGACCGATAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTGAAAACAATTTTCATTGTTTTTTTGAATTTTCATGATTATTGGTCTTATCAGTGCCAAAAACAAGTTAAGCAAAAAACATTGAAGTTTTAAAATAGCTTAATGTAGTTCACCTATCCAACGAGTACATTTCAGCTAGTTTTTCGGCTCTTCCATGCAAAATATCAAGAATGTGTCAATTGATAAAATATTTGTGACGTTATGATAAGCAATTTATCAGTTGACAACGTTTTGTCATCTTTCACAGAAACTGAGAAATATTAGCTCAAAGTTAGATGTTGGGAGATCCTTCTATTACAGGTTTCACGATATGTGTGGTGCGGATTTTAGCAAGTTGATAAAATTACATAACATTTATTATTCTTGAAAAATAATCACATTTATGAGATAACTCAAATTTTGGTAATGGTCCAATTCATCTTCCGACTATCTGATCGGTTACAATCTACAACTTTAGATTCTTTCTTCTTTCGCATTGTCCAAAAAACTAGAACTGCTTCAATGGCACATCCGAATAGTTTTGTAACTCCTCCATACGGACCGATATTCTGTTTAAAAATGTTTAAAGGAAAACGATAATTGATTACCTGGAAACTGAAAAATTGAGTTGTCGAAAACTGTCTTGCAATGATATTTGGCAGAAAATGAAATATAAAAACAATGGATGACTCAATAAGTGCAAGACGATTGACCTGAAAGTTTCAGATTCTTCATGATCGAAAAATAGAATTAAGCTCACTCTTGTAAGTTTGAATCCTTCAGTTTTCATCATATTGTTAATGATAAACAGTTTGATACATAATAGCGAAGAAAATATAAAAGTCAATGCGAAAACTGTCTGAAAAAAATATAGAATCTGTACTCGAAAATTCTTAAAGGATCATACCGATTTATGAGTGGTCCAATAGCTATAAAAACAAGCATTTATTGCACAACCAAAAGCTGCGCAATTTTTCGGAATATTCAGATGAAAGTCGCAGGGTCCGTATAGAACCAC</canonical>
            <polymorphic>TTTCTGAAAACAATTTTCATTGTTTTTTTGAATTTTCATGATTATTGGTCTTATCAGTGCCAAAAACAAGTTAAGCAAAAAACATTGAAGTTTTAAAATAGCTTAATGTAGTTCACCTATCCAACGAGTACATTTCAGCTAGTTTTTCGGCTCTTCCATGCAAAATATCAAGAATGTGTCAATTGATAAAATATTTGTGACGTTATGATAAGCAATTTATCAGTTGACAACGTTTTGTCATCTTTCACAGAAACTGAGAAATATTAGCTCAAAGTTAGATGTTGGGAGATCCTTCTATTACAGGTTTCACGATATGTGTGGTGCGGATTTTAGCAAGTTGATAAAATTACATAACATTTATTATTCTTGAAAAATAATCACATTTATGAGATAACTCAAATTTTGGTAATGGTCCAATTCATCTTCCGACTATCTGATCGGTTACAATCTACAACTTTAGATTCTTTCTTCTTTCGCATTGTCCAAAAAACTAGAACTGMTTCAATGGCACATCCGAATAGTTTTGTAACTCCTCCATACGGACCGATATTCTGTTTAAAAATGTTTAAAGGAAAACGATAATTGATTACCTGGAAACTGAAAAATTGAGTTGTCGAAAACTGTCTTGCAATGATATTTGGCAGAAAATGAAATATAAAAACAATGGATGACTCAATAAGTGCAAGACGATTGACCTGAAAGTTTCAGATTCTTCATGATCGAAAAATAGAATTAAGCTCACTCTTGTAAGTTTGAATCCTTCAGTTTTCATCATATTGTTAATGATAAACAGTTTGATACATAATAGCGAAGAAAATATAAAAGTCAATGCGAAAACTGTCTGAAAAAAATATAGAATCTGTACTCGAAAATTCTTAAAGGATCATACCGATTTATGAGTGGTCCAATAGCTATAAAAACAAGCATTTATTGCACAACCAAAAGCTGCGCAATTTTTCGGAATATTCAGATGAAAGTCGCAGGGTCCGTATAGAACCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>505 425 70</canonical_bands>
                <polymorphic_bands>930 70</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTGATCGGTTACAATCTACAA</pcr_primer_p1>
		<pcr_primer_p2>CTTATTGAGTCATCCATTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCTGATCGGTTACAATCTACAACTTTAGATTCTTTCTTCTTTCGCATTGTCCAAAAAACTAGAACTGCTTCAATGGCACATCCGAATAGTTTTGTAACTCCTCCATACGGACCGATATTCTGTTTAAAAATGTTTAAAGGAAAACGATAATTGATTACCTGGAAACTGAAAAATTGAGTTGTCGAAAACTGTCTTGCAATGATATTTGGCAGAAAATGAAATATAAAAACAATGGATGACTCAATAAG</canonical_amplicon>
		<polymorphic_amplicon>ATCTGATCGGTTACAATCTACAACTTTAGATTCTTTCTTCTTTCGCATTGTCCAAAAAACTAGAACTGMTTCAATGGCACATCCGAATAGTTTTGTAACTCCTCCATACGGACCGATATTCTGTTTAAAAATGTTTAAAGGAAAACGATAATTGATTACCTGGAAACTGAAAAATTGAGTTGTCGAAAACTGTCTTGCAATGATATTTGGCAGAAAATGAAATATAAAAACAATGGATGACTCAATAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25364</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>166153</contig_pos>
        <strand>+</strand>
        <context>GTTTAAAAAT[G/T]TTTAAAGGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCGAATAGTTTTGTAACTCCTCCATACGGACCGATATTCTGTTTAAAAAT</left_flank>
        <right_flank>TTTAAAGGAAAACGATAATTGATTACCTGGAAACTGAAAAATTGAGTTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAAGTTAAGCAAAAAACATTGAAGTTTTAAAATAGCTTAATGTAGTTCACCTATCCAACGAGTACATTTCAGCTAGTTTTTCGGCTCTTCCATGCAAAATATCAAGAATGTGTCAATTGATAAAATATTTGTGACGTTATGATAAGCAATTTATCAGTTGACAACGTTTTGTCATCTTTCACAGAAACTGAGAAATATTAGCTCAAAGTTAGATGTTGGGAGATCCTTCTATTACAGGTTTCACGATATGTGTGGTGCGGATTTTAGCAAGTTGATAAAATTACATAACATTTATTATTCTTGAAAAATAATCACATTTATGAGATAACTCAAATTTTGGTAATGGTCCAATTCATCTTCCGACTATCTGATCGGTTACAATCTACAACTTTAGATTCTTTCTTCTTTCGCATTGTCCAAAAAACTAGAACTGCTTCAATGGCACATCCGAATAGTTTTGTAACTCCTCCATACGGACCGATATTCTGTTTAAAAATGTTTAAAGGAAAACGATAATTGATTACCTGGAAACTGAAAAATTGAGTTGTCGAAAACTGTCTTGCAATGATATTTGGCAGAAAATGAAATATAAAAACAATGGATGACTCAATAAGTGCAAGACGATTGACCTGAAAGTTTCAGATTCTTCATGATCGAAAAATAGAATTAAGCTCACTCTTGTAAGTTTGAATCCTTCAGTTTTCATCATATTGTTAATGATAAACAGTTTGATACATAATAGCGAAGAAAATATAAAAGTCAATGCGAAAACTGTCTGAAAAAAATATAGAATCTGTACTCGAAAATTCTTAAAGGATCATACCGATTTATGAGTGGTCCAATAGCTATAAAAACAAGCATTTATTGCACAACCAAAAGCTGCGCAATTTTTCGGAATATTCAGATGAAAGTCGCAGGGTCCGTATAGAACCACGTCTTCAGTCAATCCGAATAACATTGCTAGCAAAAGAAATATGATGTTCGGACAGCGGTGGCGA</canonical>
            <polymorphic>AACAAGTTAAGCAAAAAACATTGAAGTTTTAAAATAGCTTAATGTAGTTCACCTATCCAACGAGTACATTTCAGCTAGTTTTTCGGCTCTTCCATGCAAAATATCAAGAATGTGTCAATTGATAAAATATTTGTGACGTTATGATAAGCAATTTATCAGTTGACAACGTTTTGTCATCTTTCACAGAAACTGAGAAATATTAGCTCAAAGTTAGATGTTGGGAGATCCTTCTATTACAGGTTTCACGATATGTGTGGTGCGGATTTTAGCAAGTTGATAAAATTACATAACATTTATTATTCTTGAAAAATAATCACATTTATGAGATAACTCAAATTTTGGTAATGGTCCAATTCATCTTCCGACTATCTGATCGGTTACAATCTACAACTTTAGATTCTTTCTTCTTTCGCATTGTCCAAAAAACTAGAACTGCTTCAATGGCACATCCGAATAGTTTTGTAACTCCTCCATACGGACCGATATTCTGTTTAAAAATKTTTAAAGGAAAACGATAATTGATTACCTGGAAACTGAAAAATTGAGTTGTCGAAAACTGTCTTGCAATGATATTTGGCAGAAAATGAAATATAAAAACAATGGATGACTCAATAAGTGCAAGACGATTGACCTGAAAGTTTCAGATTCTTCATGATCGAAAAATAGAATTAAGCTCACTCTTGTAAGTTTGAATCCTTCAGTTTTCATCATATTGTTAATGATAAACAGTTTGATACATAATAGCGAAGAAAATATAAAAGTCAATGCGAAAACTGTCTGAAAAAAATATAGAATCTGTACTCGAAAATTCTTAAAGGATCATACCGATTTATGAGTGGTCCAATAGCTATAAAAACAAGCATTTATTGCACAACCAAAAGCTGCGCAATTTTTCGGAATATTCAGATGAAAGTCGCAGGGTCCGTATAGAACCACGTCTTCAGTCAATCCGAATAACATTGCTAGCAAAAGAAATATGATGTTCGGACAGCGGTGGCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTGATCGGTTACAATCTACAA</pcr_primer_p1>
		<pcr_primer_p2>CTTATTGAGTCATCCATTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCTGATCGGTTACAATCTACAACTTTAGATTCTTTCTTCTTTCGCATTGTCCAAAAAACTAGAACTGCTTCAATGGCACATCCGAATAGTTTTGTAACTCCTCCATACGGACCGATATTCTGTTTAAAAATGTTTAAAGGAAAACGATAATTGATTACCTGGAAACTGAAAAATTGAGTTGTCGAAAACTGTCTTGCAATGATATTTGGCAGAAAATGAAATATAAAAACAATGGATGACTCAATAAG</canonical_amplicon>
		<polymorphic_amplicon>ATCTGATCGGTTACAATCTACAACTTTAGATTCTTTCTTCTTTCGCATTGTCCAAAAAACTAGAACTGCTTCAATGGCACATCCGAATAGTTTTGTAACTCCTCCATACGGACCGATATTCTGTTTAAAAATKTTTAAAGGAAAACGATAATTGATTACCTGGAAACTGAAAAATTGAGTTGTCGAAAACTGTCTTGCAATGATATTTGGCAGAAAATGAAATATAAAAACAATGGATGACTCAATAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25365</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>166362</contig_pos>
        <strand>+</strand>
        <context>CAGTTTTCAT[C/T]ATATTGTTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATAGAATTAAGCTCACTCTTGTAAGTTTGAATCCTTCAGTTTTCAT</left_flank>
        <right_flank>ATATTGTTAATGATAAACAGTTTGATACATAATAGCGAAGAAAATATAAA</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTAGATGTTGGGAGATCCTTCTATTACAGGTTTCACGATATGTGTGGTGCGGATTTTAGCAAGTTGATAAAATTACATAACATTTATTATTCTTGAAAAATAATCACATTTATGAGATAACTCAAATTTTGGTAATGGTCCAATTCATCTTCCGACTATCTGATCGGTTACAATCTACAACTTTAGATTCTTTCTTCTTTCGCATTGTCCAAAAAACTAGAACTGCTTCAATGGCACATCCGAATAGTTTTGTAACTCCTCCATACGGACCGATATTCTGTTTAAAAATGTTTAAAGGAAAACGATAATTGATTACCTGGAAACTGAAAAATTGAGTTGTCGAAAACTGTCTTGCAATGATATTTGGCAGAAAATGAAATATAAAAACAATGGATGACTCAATAAGTGCAAGACGATTGACCTGAAAGTTTCAGATTCTTCATGATCGAAAAATAGAATTAAGCTCACTCTTGTAAGTTTGAATCCTTCAGTTTTCATCATATTGTTAATGATAAACAGTTTGATACATAATAGCGAAGAAAATATAAAAGTCAATGCGAAAACTGTCTGAAAAAAATATAGAATCTGTACTCGAAAATTCTTAAAGGATCATACCGATTTATGAGTGGTCCAATAGCTATAAAAACAAGCATTTATTGCACAACCAAAAGCTGCGCAATTTTTCGGAATATTCAGATGAAAGTCGCAGGGTCCGTATAGAACCACGTCTTCAGTCAATCCGAATAACATTGCTAGCAAAAGAAATATGATGTTCGGACAGCGGTGGCGATAGTTGTGAAAGAAGATTGGAGCATATGCAGCCTGAAAAAAAGCAAGTGCGCTCTACTGATAATTCTTAAAACCTGCTTACTATCATTCTTTCAATTGCCACTGATAGTACTATTATAGACCGACATGATCCAACATTTGACGCTGATAGCGATAGATAGAACATGAAATTTTGATATTCAGAAAGGTGCTTTGAAAAATATGAATACA</canonical>
            <polymorphic>GTTAGATGTTGGGAGATCCTTCTATTACAGGTTTCACGATATGTGTGGTGCGGATTTTAGCAAGTTGATAAAATTACATAACATTTATTATTCTTGAAAAATAATCACATTTATGAGATAACTCAAATTTTGGTAATGGTCCAATTCATCTTCCGACTATCTGATCGGTTACAATCTACAACTTTAGATTCTTTCTTCTTTCGCATTGTCCAAAAAACTAGAACTGCTTCAATGGCACATCCGAATAGTTTTGTAACTCCTCCATACGGACCGATATTCTGTTTAAAAATGTTTAAAGGAAAACGATAATTGATTACCTGGAAACTGAAAAATTGAGTTGTCGAAAACTGTCTTGCAATGATATTTGGCAGAAAATGAAATATAAAAACAATGGATGACTCAATAAGTGCAAGACGATTGACCTGAAAGTTTCAGATTCTTCATGATCGAAAAATAGAATTAAGCTCACTCTTGTAAGTTTGAATCCTTCAGTTTTCATYATATTGTTAATGATAAACAGTTTGATACATAATAGCGAAGAAAATATAAAAGTCAATGCGAAAACTGTCTGAAAAAAATATAGAATCTGTACTCGAAAATTCTTAAAGGATCATACCGATTTATGAGTGGTCCAATAGCTATAAAAACAAGCATTTATTGCACAACCAAAAGCTGCGCAATTTTTCGGAATATTCAGATGAAAGTCGCAGGGTCCGTATAGAACCACGTCTTCAGTCAATCCGAATAACATTGCTAGCAAAAGAAATATGATGTTCGGACAGCGGTGGCGATAGTTGTGAAAGAAGATTGGAGCATATGCAGCCTGAAAAAAAGCAAGTGCGCTCTACTGATAATTCTTAAAACCTGCTTACTATCATTCTTTCAATTGCCACTGATAGTACTATTATAGACCGACATGATCCAACATTTGACGCTGATAGCGATAGATAGAACATGAAATTTTGATATTCAGAAAGGTGCTTTGAAAAATATGAATACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATATTTGGCAGAAAATGAAATA</pcr_primer_p1>
		<pcr_primer_p2>TCCTTTAAGAATTTTCGAGTACA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GATATTTGGCAGAAAATGAAATATAAAAACAATGGATGACTCAATAAGTGCAAGACGATTGACCTGAAAGTTTCAGATTCTTCATGATCGAAAAATAGAATTAAGCTCACTCTTGTAAGTTTGAATCCTTCAGTTTTCATCATATTGTTAATGATAAACAGTTTGATACATAATAGCGAAGAAAATATAAAAGTCAATGCGAAAACTGTCTGAAAAAAATATAGAATCTGTACTCGAAAATTCTTAAAGGA</canonical_amplicon>
		<polymorphic_amplicon>GATATTTGGCAGAAAATGAAATATAAAAACAATGGATGACTCAATAAGTGCAAGACGATTGACCTGAAAGTTTCAGATTCTTCATGATCGAAAAATAGAATTAAGCTCACTCTTGTAAGTTTGAATCCTTCAGTTTTCATYATATTGTTAATGATAAACAGTTTGATACATAATAGCGAAGAAAATATAAAAGTCAATGCGAAAACTGTCTGAAAAAAATATAGAATCTGTACTCGAAAATTCTTAAAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25370</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>169884</contig_pos>
        <strand>+</strand>
        <context>ATACAACTTT[C/T]CTAAATTTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGTTGAGCAAAGAAACTTTTATTCAAGTTACTGTATGTGATACAACTTT</left_flank>
        <right_flank>CTAAATTTCCGAAAACCATATAACTTTTTGCCAGTTTCTCGATATTTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATCATAATATCACAAACATTTTATCAACTGACAAATTTTTAATATCTTGCACAGGACATGAGAAAAAATAGCACAAACTTGACAGCTCTTCTATTACAGTTTCCCCGGTATGAAGTACTTTTTTGACAACTGTCAAAAATGACTAAATCTTGAAAATCCTATCATAAAAGCGTCCGATTTTTGTTCTAAAGGTTGCAGGTCACAGCTGAGAAGCGGGCAAAAAAAATTTTTTTTGAAAATTTCTGATTGGAAAAAAAAGGAAAAAATTCCGGCAAAAAATAATCATGATTTACGTCAGGGATTTTTTTCGAAATTAAAGAAAACAAAAAATTAAAAAATTGAAAAAAATATGATTTCTGAAGAATGAACGCATTCTTTCTGAGAATTTGAATAAGAAAAAATTGAAAAGTTTTGAGAAAATCCCAATGTTTGTGAAATGAGAACAAAAAGTTGAGCAAAGAAACTTTTATTCAAGTTACTGTATGTGATACAACTTTTCTAAATTTCCGAAAACCATATAACTTTTTGCCAGTTTCTCGATATTTTGAAGACATTGAAAAATTCAAAAAACCATGAAAAATCGAGTTCAGACAAAATAAAATAGTTGTAAAAACTTCTCCTTTGTCTACCAGAACCCATAAATACTGGTTGTCCGGGAAGATGAGCGTCAAAAAATCCATGATACCATATGGTGCACAATAGATGAAGTAGAATATTGTCATTATGGAAATCATTTTCGCTATGTGGAGCCTGTAATTTTGGTTTTTGAAGGAGGTGAGGCATCAAAAAATTTTATGGGATTGTTTGGGGAAAAAATCGCGGCCGCATAGCTCAGCCGGAAGCGGTGCTGAACCCCTGATGTTATTCATGAGTTCAACTCCTTATTAAGGTGCTCTAGGCAAAATATCTTCAAAAACTTTTTCAGGAAAAACTTACCTTTTCAAACGCAGATTTTTCTGAATCAACTCTTTGGCAGATTTTCGTATTAGATAGATCAA</canonical>
            <polymorphic>TCATCATAATATCACAAACATTTTATCAACTGACAAATTTTTAATATCTTGCACAGGACATGAGAAAAAATAGCACAAACTTGACAGCTCTTCTATTACAGTTTCCCCGGTATGAAGTACTTTTTTGACAACTGTCAAAAATGACTAAATCTTGAAAATCCTATCATAAAAGCGTCCGATTTTTGTTCTAAAGGTTGCAGGTCACAGCTGAGAAGCGGGCAAAAAAAATTTTTTTTGAAAATTTCTGATTGGAAAAAAAAGGAAAAAATTCCGGCAAAAAATAATCATGATTTACGTCAGGGATTTTTTTCGAAATTAAAGAAAACAAAAAATTAAAAAATTGAAAAAAATATGATTTCTGAAGAATGAACGCATTCTTTCTGAGAATTTGAATAAGAAAAAATTGAAAAGTTTTGAGAAAATCCCAATGTTTGTGAAATGAGAACAAAAAGTTGAGCAAAGAAACTTTTATTCAAGTTACTGTATGTGATACAACTTTYCTAAATTTCCGAAAACCATATAACTTTTTGCCAGTTTCTCGATATTTTGAAGACATTGAAAAATTCAAAAAACCATGAAAAATCGAGTTCAGACAAAATAAAATAGTTGTAAAAACTTCTCCTTTGTCTACCAGAACCCATAAATACTGGTTGTCCGGGAAGATGAGCGTCAAAAAATCCATGATACCATATGGTGCACAATAGATGAAGTAGAATATTGTCATTATGGAAATCATTTTCGCTATGTGGAGCCTGTAATTTTGGTTTTTGAAGGAGGTGAGGCATCAAAAAATTTTATGGGATTGTTTGGGGAAAAAATCGCGGCCGCATAGCTCAGCCGGAAGCGGTGCTGAACCCCTGATGTTATTCATGAGTTCAACTCCTTATTAAGGTGCTCTAGGCAAAATATCTTCAAAAACTTTTTCAGGAAAAACTTACCTTTTCAAACGCAGATTTTTCTGAATCAACTCTTTGGCAGATTTTCGTATTAGATAGATCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTGAAAAGTTTTGAGAAAATC</pcr_primer_p1>
		<pcr_primer_p2>CAGTATTTATGGGTTCTGGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATTGAAAAGTTTTGAGAAAATCCCAATGTTTGTGAAATGAGAACAAAAAGTTGAGCAAAGAAACTTTTATTCAAGTTACTGTATGTGATACAACTTTTCTAAATTTCCGAAAACCATATAACTTTTTGCCAGTTTCTCGATATTTTGAAGACATTGAAAAATTCAAAAAACCATGAAAAATCGAGTTCAGACAAAATAAAATAGTTGTAAAAACTTCTCCTTTGTCTACCAGAACCCATAAATACTG</canonical_amplicon>
		<polymorphic_amplicon>AAATTGAAAAGTTTTGAGAAAATCCCAATGTTTGTGAAATGAGAACAAAAAGTTGAGCAAAGAAACTTTTATTCAAGTTACTGTATGTGATACAACTTTYCTAAATTTCCGAAAACCATATAACTTTTTGCCAGTTTCTCGATATTTTGAAGACATTGAAAAATTCAAAAAACCATGAAAAATCGAGTTCAGACAAAATAAAATAGTTGTAAAAACTTCTCCTTTGTCTACCAGAACCCATAAATACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25371</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>169914</contig_pos>
        <strand>+</strand>
        <context>ATAACTTTTT[A/G]SCAGTTTCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTGTATGTGATACAACTTTTCTAAATTTCCGAAAACCATATAACTTTTT</left_flank>
        <right_flank>CCAGTTTCTCGATATTTTGAAGACATTGAAAAATTCAAAAAACCATGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACAAATTTTTAATATCTTGCACAGGACATGAGAAAAAATAGCACAAACTTGACAGCTCTTCTATTACAGTTTCCCCGGTATGAAGTACTTTTTTGACAACTGTCAAAAATGACTAAATCTTGAAAATCCTATCATAAAAGCGTCCGATTTTTGTTCTAAAGGTTGCAGGTCACAGCTGAGAAGCGGGCAAAAAAAATTTTTTTTGAAAATTTCTGATTGGAAAAAAAAGGAAAAAATTCCGGCAAAAAATAATCATGATTTACGTCAGGGATTTTTTTCGAAATTAAAGAAAACAAAAAATTAAAAAATTGAAAAAAATATGATTTCTGAAGAATGAACGCATTCTTTCTGAGAATTTGAATAAGAAAAAATTGAAAAGTTTTGAGAAAATCCCAATGTTTGTGAAATGAGAACAAAAAGTTGAGCAAAGAAACTTTTATTCAAGTTACTGTATGTGATACAACTTTTCTAAATTTCCGAAAACCATATAACTTTTTGCCAGTTTCTCGATATTTTGAAGACATTGAAAAATTCAAAAAACCATGAAAAATCGAGTTCAGACAAAATAAAATAGTTGTAAAAACTTCTCCTTTGTCTACCAGAACCCATAAATACTGGTTGTCCGGGAAGATGAGCGTCAAAAAATCCATGATACCATATGGTGCACAATAGATGAAGTAGAATATTGTCATTATGGAAATCATTTTCGCTATGTGGAGCCTGTAATTTTGGTTTTTGAAGGAGGTGAGGCATCAAAAAATTTTATGGGATTGTTTGGGGAAAAAATCGCGGCCGCATAGCTCAGCCGGAAGCGGTGCTGAACCCCTGATGTTATTCATGAGTTCAACTCCTTATTAAGGTGCTCTAGGCAAAATATCTTCAAAAACTTTTTCAGGAAAAACTTACCTTTTCAAACGCAGATTTTTCTGAATCAACTCTTTGGCAGATTTTCGTATTAGATAGATCAAGGAAATGGCTAAAACCGGGTGAATGAGAAT</canonical>
            <polymorphic>TGACAAATTTTTAATATCTTGCACAGGACATGAGAAAAAATAGCACAAACTTGACAGCTCTTCTATTACAGTTTCCCCGGTATGAAGTACTTTTTTGACAACTGTCAAAAATGACTAAATCTTGAAAATCCTATCATAAAAGCGTCCGATTTTTGTTCTAAAGGTTGCAGGTCACAGCTGAGAAGCGGGCAAAAAAAATTTTTTTTGAAAATTTCTGATTGGAAAAAAAAGGAAAAAATTCCGGCAAAAAATAATCATGATTTACGTCAGGGATTTTTTTCGAAATTAAAGAAAACAAAAAATTAAAAAATTGAAAAAAATATGATTTCTGAAGAATGAACGCATTCTTTCTGAGAATTTGAATAAGAAAAAATTGAAAAGTTTTGAGAAAATCCCAATGTTTGTGAAATGAGAACAAAAAGTTGAGCAAAGAAACTTTTATTCAAGTTACTGTATGTGATACAACTTTTCTAAATTTCCGAAAACCATATAACTTTTTRCCAGTTTCTCGATATTTTGAAGACATTGAAAAATTCAAAAAACCATGAAAAATCGAGTTCAGACAAAATAAAATAGTTGTAAAAACTTCTCCTTTGTCTACCAGAACCCATAAATACTGGTTGTCCGGGAAGATGAGCGTCAAAAAATCCATGATACCATATGGTGCACAATAGATGAAGTAGAATATTGTCATTATGGAAATCATTTTCGCTATGTGGAGCCTGTAATTTTGGTTTTTGAAGGAGGTGAGGCATCAAAAAATTTTATGGGATTGTTTGGGGAAAAAATCGCGGCCGCATAGCTCAGCCGGAAGCGGTGCTGAACCCCTGATGTTATTCATGAGTTCAACTCCTTATTAAGGTGCTCTAGGCAAAATATCTTCAAAAACTTTTTCAGGAAAAACTTACCTTTTCAAACGCAGATTTTTCTGAATCAACTCTTTGGCAGATTTTCGTATTAGATAGATCAAGGAAATGGCTAAAACCGGGTGAATGAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTGAAAAGTTTTGAGAAAATC</pcr_primer_p1>
		<pcr_primer_p2>CAGTATTTATGGGTTCTGGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATTGAAAAGTTTTGAGAAAATCCCAATGTTTGTGAAATGAGAACAAAAAGTTGAGCAAAGAAACTTTTATTCAAGTTACTGTATGTGATACAACTTTTCTAAATTTCCGAAAACCATATAACTTTTTGCCAGTTTCTCGATATTTTGAAGACATTGAAAAATTCAAAAAACCATGAAAAATCGAGTTCAGACAAAATAAAATAGTTGTAAAAACTTCTCCTTTGTCTACCAGAACCCATAAATACTG</canonical_amplicon>
		<polymorphic_amplicon>AAATTGAAAAGTTTTGAGAAAATCCCAATGTTTGTGAAATGAGAACAAAAAGTTGAGCAAAGAAACTTTTATTCAAGTTACTGTATGTGATACAACTTTTCTAAATTTCCGAAAACCATATAACTTTTTRCCAGTTTCTCGATATTTTGAAGACATTGAAAAATTCAAAAAACCATGAAAAATCGAGTTCAGACAAAATAAAATAGTTGTAAAAACTTCTCCTTTGTCTACCAGAACCCATAAATACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25372</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>169915</contig_pos>
        <strand>+</strand>
        <context>TAACTTTTTR[C/G]CAGTTTCTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTGTATGTGATACAACTTTTCTAAATTTCCGAAAACCATATAACTTTTTG</left_flank>
        <right_flank>CAGTTTCTCGATATTTTGAAGACATTGAAAAATTCAAAAAACCATGAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACAAATTTTTAATATCTTGCACAGGACATGAGAAAAAATAGCACAAACTTGACAGCTCTTCTATTACAGTTTCCCCGGTATGAAGTACTTTTTTGACAACTGTCAAAAATGACTAAATCTTGAAAATCCTATCATAAAAGCGTCCGATTTTTGTTCTAAAGGTTGCAGGTCACAGCTGAGAAGCGGGCAAAAAAAATTTTTTTTGAAAATTTCTGATTGGAAAAAAAAGGAAAAAATTCCGGCAAAAAATAATCATGATTTACGTCAGGGATTTTTTTCGAAATTAAAGAAAACAAAAAATTAAAAAATTGAAAAAAATATGATTTCTGAAGAATGAACGCATTCTTTCTGAGAATTTGAATAAGAAAAAATTGAAAAGTTTTGAGAAAATCCCAATGTTTGTGAAATGAGAACAAAAAGTTGAGCAAAGAAACTTTTATTCAAGTTACTGTATGTGATACAACTTTTCTAAATTTCCGAAAACCATATAACTTTTTGCCAGTTTCTCGATATTTTGAAGACATTGAAAAATTCAAAAAACCATGAAAAATCGAGTTCAGACAAAATAAAATAGTTGTAAAAACTTCTCCTTTGTCTACCAGAACCCATAAATACTGGTTGTCCGGGAAGATGAGCGTCAAAAAATCCATGATACCATATGGTGCACAATAGATGAAGTAGAATATTGTCATTATGGAAATCATTTTCGCTATGTGGAGCCTGTAATTTTGGTTTTTGAAGGAGGTGAGGCATCAAAAAATTTTATGGGATTGTTTGGGGAAAAAATCGCGGCCGCATAGCTCAGCCGGAAGCGGTGCTGAACCCCTGATGTTATTCATGAGTTCAACTCCTTATTAAGGTGCTCTAGGCAAAATATCTTCAAAAACTTTTTCAGGAAAAACTTACCTTTTCAAACGCAGATTTTTCTGAATCAACTCTTTGGCAGATTTTCGTATTAGATAGATCAAGGAAATGGCTAAAACCGGGTGAATGAGAATA</canonical>
            <polymorphic>GACAAATTTTTAATATCTTGCACAGGACATGAGAAAAAATAGCACAAACTTGACAGCTCTTCTATTACAGTTTCCCCGGTATGAAGTACTTTTTTGACAACTGTCAAAAATGACTAAATCTTGAAAATCCTATCATAAAAGCGTCCGATTTTTGTTCTAAAGGTTGCAGGTCACAGCTGAGAAGCGGGCAAAAAAAATTTTTTTTGAAAATTTCTGATTGGAAAAAAAAGGAAAAAATTCCGGCAAAAAATAATCATGATTTACGTCAGGGATTTTTTTCGAAATTAAAGAAAACAAAAAATTAAAAAATTGAAAAAAATATGATTTCTGAAGAATGAACGCATTCTTTCTGAGAATTTGAATAAGAAAAAATTGAAAAGTTTTGAGAAAATCCCAATGTTTGTGAAATGAGAACAAAAAGTTGAGCAAAGAAACTTTTATTCAAGTTACTGTATGTGATACAACTTTTCTAAATTTCCGAAAACCATATAACTTTTTGSCAGTTTCTCGATATTTTGAAGACATTGAAAAATTCAAAAAACCATGAAAAATCGAGTTCAGACAAAATAAAATAGTTGTAAAAACTTCTCCTTTGTCTACCAGAACCCATAAATACTGGTTGTCCGGGAAGATGAGCGTCAAAAAATCCATGATACCATATGGTGCACAATAGATGAAGTAGAATATTGTCATTATGGAAATCATTTTCGCTATGTGGAGCCTGTAATTTTGGTTTTTGAAGGAGGTGAGGCATCAAAAAATTTTATGGGATTGTTTGGGGAAAAAATCGCGGCCGCATAGCTCAGCCGGAAGCGGTGCTGAACCCCTGATGTTATTCATGAGTTCAACTCCTTATTAAGGTGCTCTAGGCAAAATATCTTCAAAAACTTTTTCAGGAAAAACTTACCTTTTCAAACGCAGATTTTTCTGAATCAACTCTTTGGCAGATTTTCGTATTAGATAGATCAAGGAAATGGCTAAAACCGGGTGAATGAGAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTGAAAAGTTTTGAGAAAATC</pcr_primer_p1>
		<pcr_primer_p2>CAGTATTTATGGGTTCTGGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATTGAAAAGTTTTGAGAAAATCCCAATGTTTGTGAAATGAGAACAAAAAGTTGAGCAAAGAAACTTTTATTCAAGTTACTGTATGTGATACAACTTTTCTAAATTTCCGAAAACCATATAACTTTTTGCCAGTTTCTCGATATTTTGAAGACATTGAAAAATTCAAAAAACCATGAAAAATCGAGTTCAGACAAAATAAAATAGTTGTAAAAACTTCTCCTTTGTCTACCAGAACCCATAAATACTG</canonical_amplicon>
		<polymorphic_amplicon>AAATTGAAAAGTTTTGAGAAAATCCCAATGTTTGTGAAATGAGAACAAAAAGTTGAGCAAAGAAACTTTTATTCAAGTTACTGTATGTGATACAACTTTTCTAAATTTCCGAAAACCATATAACTTTTTGSCAGTTTCTCGATATTTTGAAGACATTGAAAAATTCAAAAAACCATGAAAAATCGAGTTCAGACAAAATAAAATAGTTGTAAAAACTTCTCCTTTGTCTACCAGAACCCATAAATACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25373</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>170118</contig_pos>
        <strand>+</strand>
        <context>TTATGGAAAT[C/G]ATTTTCGCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATACCATATGGTGCACAATAGATGAAGTAGAATATTGTCATTATGGAAAT</left_flank>
        <right_flank>ATTTTCGCTATGTGGAGCCTGTAATTTTGGTTTTTGAAGGAGGTGAGGCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAAATTTCTGATTGGAAAAAAAAGGAAAAAATTCCGGCAAAAAATAATCATGATTTACGTCAGGGATTTTTTTCGAAATTAAAGAAAACAAAAAATTAAAAAATTGAAAAAAATATGATTTCTGAAGAATGAACGCATTCTTTCTGAGAATTTGAATAAGAAAAAATTGAAAAGTTTTGAGAAAATCCCAATGTTTGTGAAATGAGAACAAAAAGTTGAGCAAAGAAACTTTTATTCAAGTTACTGTATGTGATACAACTTTTCTAAATTTCCGAAAACCATATAACTTTTTGCCAGTTTCTCGATATTTTGAAGACATTGAAAAATTCAAAAAACCATGAAAAATCGAGTTCAGACAAAATAAAATAGTTGTAAAAACTTCTCCTTTGTCTACCAGAACCCATAAATACTGGTTGTCCGGGAAGATGAGCGTCAAAAAATCCATGATACCATATGGTGCACAATAGATGAAGTAGAATATTGTCATTATGGAAATCATTTTCGCTATGTGGAGCCTGTAATTTTGGTTTTTGAAGGAGGTGAGGCATCAAAAAATTTTATGGGATTGTTTGGGGAAAAAATCGCGGCCGCATAGCTCAGCCGGAAGCGGTGCTGAACCCCTGATGTTATTCATGAGTTCAACTCCTTATTAAGGTGCTCTAGGCAAAATATCTTCAAAAACTTTTTCAGGAAAAACTTACCTTTTCAAACGCAGATTTTTCTGAATCAACTCTTTGGCAGATTTTCGTATTAGATAGATCAAGGAAATGGCTAAAACCGGGTGAATGAGAATAATCAACAATTGAGTTCCTCCACTGACCAATTCCATTATTTCTAGTTCTTCAAAAATGAAAAACGAAAAATTAACTTTAAAATAAAAAAGAGAAGATAACGTGATGCTAATGGAATAAACAAAAAGGACTATACAGTAACCACATGCTGGTTTTGATATCCATTGATTAGGCCTTGATTTTTTCAGAATCAGTAACCTCAAAAG</canonical>
            <polymorphic>TTGAAAATTTCTGATTGGAAAAAAAAGGAAAAAATTCCGGCAAAAAATAATCATGATTTACGTCAGGGATTTTTTTCGAAATTAAAGAAAACAAAAAATTAAAAAATTGAAAAAAATATGATTTCTGAAGAATGAACGCATTCTTTCTGAGAATTTGAATAAGAAAAAATTGAAAAGTTTTGAGAAAATCCCAATGTTTGTGAAATGAGAACAAAAAGTTGAGCAAAGAAACTTTTATTCAAGTTACTGTATGTGATACAACTTTTCTAAATTTCCGAAAACCATATAACTTTTTGCCAGTTTCTCGATATTTTGAAGACATTGAAAAATTCAAAAAACCATGAAAAATCGAGTTCAGACAAAATAAAATAGTTGTAAAAACTTCTCCTTTGTCTACCAGAACCCATAAATACTGGTTGTCCGGGAAGATGAGCGTCAAAAAATCCATGATACCATATGGTGCACAATAGATGAAGTAGAATATTGTCATTATGGAAATSATTTTCGCTATGTGGAGCCTGTAATTTTGGTTTTTGAAGGAGGTGAGGCATCAAAAAATTTTATGGGATTGTTTGGGGAAAAAATCGCGGCCGCATAGCTCAGCCGGAAGCGGTGCTGAACCCCTGATGTTATTCATGAGTTCAACTCCTTATTAAGGTGCTCTAGGCAAAATATCTTCAAAAACTTTTTCAGGAAAAACTTACCTTTTCAAACGCAGATTTTTCTGAATCAACTCTTTGGCAGATTTTCGTATTAGATAGATCAAGGAAATGGCTAAAACCGGGTGAATGAGAATAATCAACAATTGAGTTCCTCCACTGACCAATTCCATTATTTCTAGTTCTTCAAAAATGAAAAACGAAAAATTAACTTTAAAATAAAAAAGAGAAGATAACGTGATGCTAATGGAATAAACAAAAAGGACTATACAGTAACCACATGCTGGTTTTGATATCCATTGATTAGGCCTTGATTTTTTCAGAATCAGTAACCTCAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCTACCAGAACCCATAAATAC</pcr_primer_p1>
		<pcr_primer_p2>GAATAACATCAGGGGTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TGTCTACCAGAACCCATAAATACTGGTTGTCCGGGAAGATGAGCGTCAAAAAATCCATGATACCATATGGTGCACAATAGATGAAGTAGAATATTGTCATTATGGAAATCATTTTCGCTATGTGGAGCCTGTAATTTTGGTTTTTGAAGGAGGTGAGGCATCAAAAAATTTTATGGGATTGTTTGGGGAAAAAATCGCGGCCGCATAGCTCAGCCGGAAGCGGTGCTGAACCCCTGATGTTATTC</canonical_amplicon>
		<polymorphic_amplicon>TGTCTACCAGAACCCATAAATACTGGTTGTCCGGGAAGATGAGCGTCAAAAAATCCATGATACCATATGGTGCACAATAGATGAAGTAGAATATTGTCATTATGGAAATSATTTTCGCTATGTGGAGCCTGTAATTTTGGTTTTTGAAGGAGGTGAGGCATCAAAAAATTTTATGGGATTGTTTGGGGAAAAAATCGCGGCCGCATAGCTCAGCCGGAAGCGGTGCTGAACCCCTGATGTTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25374</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>170158</contig_pos>
        <strand>+</strand>
        <context>GTTTTTGAAG[A/G]AGGTGAGGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATGGAAATCATTTTCGCTATGTGGAGCCTGTAATTTTGGTTTTTGAAG</left_flank>
        <right_flank>AGGTGAGGCATCAAAAAATTTTATGGGATTGTTTGGGGAAAAAATCGCGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAAATAATCATGATTTACGTCAGGGATTTTTTTCGAAATTAAAGAAAACAAAAAATTAAAAAATTGAAAAAAATATGATTTCTGAAGAATGAACGCATTCTTTCTGAGAATTTGAATAAGAAAAAATTGAAAAGTTTTGAGAAAATCCCAATGTTTGTGAAATGAGAACAAAAAGTTGAGCAAAGAAACTTTTATTCAAGTTACTGTATGTGATACAACTTTTCTAAATTTCCGAAAACCATATAACTTTTTGCCAGTTTCTCGATATTTTGAAGACATTGAAAAATTCAAAAAACCATGAAAAATCGAGTTCAGACAAAATAAAATAGTTGTAAAAACTTCTCCTTTGTCTACCAGAACCCATAAATACTGGTTGTCCGGGAAGATGAGCGTCAAAAAATCCATGATACCATATGGTGCACAATAGATGAAGTAGAATATTGTCATTATGGAAATCATTTTCGCTATGTGGAGCCTGTAATTTTGGTTTTTGAAGGAGGTGAGGCATCAAAAAATTTTATGGGATTGTTTGGGGAAAAAATCGCGGCCGCATAGCTCAGCCGGAAGCGGTGCTGAACCCCTGATGTTATTCATGAGTTCAACTCCTTATTAAGGTGCTCTAGGCAAAATATCTTCAAAAACTTTTTCAGGAAAAACTTACCTTTTCAAACGCAGATTTTTCTGAATCAACTCTTTGGCAGATTTTCGTATTAGATAGATCAAGGAAATGGCTAAAACCGGGTGAATGAGAATAATCAACAATTGAGTTCCTCCACTGACCAATTCCATTATTTCTAGTTCTTCAAAAATGAAAAACGAAAAATTAACTTTAAAATAAAAAAGAGAAGATAACGTGATGCTAATGGAATAAACAAAAAGGACTATACAGTAACCACATGCTGGTTTTGATATCCATTGATTAGGCCTTGATTTTTTCAGAATCAGTAACCTCAAAAGTGCCAAATACACTCCCAGCCAGACGGATGTTTGCTCCAGA</canonical>
            <polymorphic>CAAAAAATAATCATGATTTACGTCAGGGATTTTTTTCGAAATTAAAGAAAACAAAAAATTAAAAAATTGAAAAAAATATGATTTCTGAAGAATGAACGCATTCTTTCTGAGAATTTGAATAAGAAAAAATTGAAAAGTTTTGAGAAAATCCCAATGTTTGTGAAATGAGAACAAAAAGTTGAGCAAAGAAACTTTTATTCAAGTTACTGTATGTGATACAACTTTTCTAAATTTCCGAAAACCATATAACTTTTTGCCAGTTTCTCGATATTTTGAAGACATTGAAAAATTCAAAAAACCATGAAAAATCGAGTTCAGACAAAATAAAATAGTTGTAAAAACTTCTCCTTTGTCTACCAGAACCCATAAATACTGGTTGTCCGGGAAGATGAGCGTCAAAAAATCCATGATACCATATGGTGCACAATAGATGAAGTAGAATATTGTCATTATGGAAATCATTTTCGCTATGTGGAGCCTGTAATTTTGGTTTTTGAAGRAGGTGAGGCATCAAAAAATTTTATGGGATTGTTTGGGGAAAAAATCGCGGCCGCATAGCTCAGCCGGAAGCGGTGCTGAACCCCTGATGTTATTCATGAGTTCAACTCCTTATTAAGGTGCTCTAGGCAAAATATCTTCAAAAACTTTTTCAGGAAAAACTTACCTTTTCAAACGCAGATTTTTCTGAATCAACTCTTTGGCAGATTTTCGTATTAGATAGATCAAGGAAATGGCTAAAACCGGGTGAATGAGAATAATCAACAATTGAGTTCCTCCACTGACCAATTCCATTATTTCTAGTTCTTCAAAAATGAAAAACGAAAAATTAACTTTAAAATAAAAAAGAGAAGATAACGTGATGCTAATGGAATAAACAAAAAGGACTATACAGTAACCACATGCTGGTTTTGATATCCATTGATTAGGCCTTGATTTTTTCAGAATCAGTAACCTCAAAAGTGCCAAATACACTCCCAGCCAGACGGATGTTTGCTCCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGGTGCACAATAGATGAAGTAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAAGATATTTTGCCTAGA</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>ATGGTGCACAATAGATGAAGTAGAATATTGTCATTATGGAAATCATTTTCGCTATGTGGAGCCTGTAATTTTGGTTTTTGAAGGAGGTGAGGCATCAAAAAATTTTATGGGATTGTTTGGGGAAAAAATCGCGGCCGCATAGCTCAGCCGGAAGCGGTGCTGAACCCCTGATGTTATTCATGAGTTCAACTCCTTATTAAGGTGCTCTAGGCAAAATATCTTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATGGTGCACAATAGATGAAGTAGAATATTGTCATTATGGAAATCATTTTCGCTATGTGGAGCCTGTAATTTTGGTTTTTGAAGRAGGTGAGGCATCAAAAAATTTTATGGGATTGTTTGGGGAAAAAATCGCGGCCGCATAGCTCAGCCGGAAGCGGTGCTGAACCCCTGATGTTATTCATGAGTTCAACTCCTTATTAAGGTGCTCTAGGCAAAATATCTTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25375</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>170311</contig_pos>
        <strand>+</strand>
        <context>AACTTTTTCA[A/G]GAAAAACTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAACTCCTTATTAAGGTGCTCTAGGCAAAATATCTTCAAAAACTTTTTCA</left_flank>
        <right_flank>GAAAAACTTACCTTTTCAAACGCAGATTTTTCTGAATCAACTCTTTGGCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTTTGTGAAATGAGAACAAAAAGTTGAGCAAAGAAACTTTTATTCAAGTTACTGTATGTGATACAACTTTTCTAAATTTCCGAAAACCATATAACTTTTTGCCAGTTTCTCGATATTTTGAAGACATTGAAAAATTCAAAAAACCATGAAAAATCGAGTTCAGACAAAATAAAATAGTTGTAAAAACTTCTCCTTTGTCTACCAGAACCCATAAATACTGGTTGTCCGGGAAGATGAGCGTCAAAAAATCCATGATACCATATGGTGCACAATAGATGAAGTAGAATATTGTCATTATGGAAATCATTTTCGCTATGTGGAGCCTGTAATTTTGGTTTTTGAAGGAGGTGAGGCATCAAAAAATTTTATGGGATTGTTTGGGGAAAAAATCGCGGCCGCATAGCTCAGCCGGAAGCGGTGCTGAACCCCTGATGTTATTCATGAGTTCAACTCCTTATTAAGGTGCTCTAGGCAAAATATCTTCAAAAACTTTTTCAGGAAAAACTTACCTTTTCAAACGCAGATTTTTCTGAATCAACTCTTTGGCAGATTTTCGTATTAGATAGATCAAGGAAATGGCTAAAACCGGGTGAATGAGAATAATCAACAATTGAGTTCCTCCACTGACCAATTCCATTATTTCTAGTTCTTCAAAAATGAAAAACGAAAAATTAACTTTAAAATAAAAAAGAGAAGATAACGTGATGCTAATGGAATAAACAAAAAGGACTATACAGTAACCACATGCTGGTTTTGATATCCATTGATTAGGCCTTGATTTTTTCAGAATCAGTAACCTCAAAAGTGCCAAATACACTCCCAGCCAGACGGATGTTTGCTCCAGAATGTCTCGTTGAAGCTCACGAATCCATAGCTCATCTCCAGATGTTTTTTCGCAGATAAAAGGGGGAAACCAGATGGGTTTAATTTTATCAATAACAATAACGGATAACCTTATCAAATCACTGAAAGCGATTGCAATCAAAATATAGCTTGCG</canonical>
            <polymorphic>ATGTTTGTGAAATGAGAACAAAAAGTTGAGCAAAGAAACTTTTATTCAAGTTACTGTATGTGATACAACTTTTCTAAATTTCCGAAAACCATATAACTTTTTGCCAGTTTCTCGATATTTTGAAGACATTGAAAAATTCAAAAAACCATGAAAAATCGAGTTCAGACAAAATAAAATAGTTGTAAAAACTTCTCCTTTGTCTACCAGAACCCATAAATACTGGTTGTCCGGGAAGATGAGCGTCAAAAAATCCATGATACCATATGGTGCACAATAGATGAAGTAGAATATTGTCATTATGGAAATCATTTTCGCTATGTGGAGCCTGTAATTTTGGTTTTTGAAGGAGGTGAGGCATCAAAAAATTTTATGGGATTGTTTGGGGAAAAAATCGCGGCCGCATAGCTCAGCCGGAAGCGGTGCTGAACCCCTGATGTTATTCATGAGTTCAACTCCTTATTAAGGTGCTCTAGGCAAAATATCTTCAAAAACTTTTTCARGAAAAACTTACCTTTTCAAACGCAGATTTTTCTGAATCAACTCTTTGGCAGATTTTCGTATTAGATAGATCAAGGAAATGGCTAAAACCGGGTGAATGAGAATAATCAACAATTGAGTTCCTCCACTGACCAATTCCATTATTTCTAGTTCTTCAAAAATGAAAAACGAAAAATTAACTTTAAAATAAAAAAGAGAAGATAACGTGATGCTAATGGAATAAACAAAAAGGACTATACAGTAACCACATGCTGGTTTTGATATCCATTGATTAGGCCTTGATTTTTTCAGAATCAGTAACCTCAAAAGTGCCAAATACACTCCCAGCCAGACGGATGTTTGCTCCAGAATGTCTCGTTGAAGCTCACGAATCCATAGCTCATCTCCAGATGTTTTTTCGCAGATAAAAGGGGGAAACCAGATGGGTTTAATTTTATCAATAACAATAACGGATAACCTTATCAAATCACTGAAAGCGATTGCAATCAAAATATAGCTTGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTTTATGGGATTGTTTG</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTGATTATTCTCATTCACC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTTTATGGGATTGTTTGGGGAAAAAATCGCGGCCGCATAGCTCAGCCGGAAGCGGTGCTGAACCCCTGATGTTATTCATGAGTTCAACTCCTTATTAAGGTGCTCTAGGCAAAATATCTTCAAAAACTTTTTCAGGAAAAACTTACCTTTTCAAACGCAGATTTTTCTGAATCAACTCTTTGGCAGATTTTCGTATTAGATAGATCAAGGAAATGGCTAAAACCGGGTGAATGAGAATAATCAACAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTTTATGGGATTGTTTGGGGAAAAAATCGCGGCCGCATAGCTCAGCCGGAAGCGGTGCTGAACCCCTGATGTTATTCATGAGTTCAACTCCTTATTAAGGTGCTCTAGGCAAAATATCTTCAAAAACTTTTTCARGAAAAACTTACCTTTTCAAACGCAGATTTTTCTGAATCAACTCTTTGGCAGATTTTCGTATTAGATAGATCAAGGAAATGGCTAAAACCGGGTGAATGAGAATAATCAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25376</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>170355</contig_pos>
        <strand>+</strand>
        <context>GAATCAACTC[C/T]TTGGCAGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCAGGAAAAACTTACCTTTTCAAACGCAGATTTTTCTGAATCAACTC</left_flank>
        <right_flank>TTGGCAGATTTTCGTATTAGATAGATCAAGGAAATGGCTAAAACCGGGTG</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAAGTTACTGTATGTGATACAACTTTTCTAAATTTCCGAAAACCATATAACTTTTTGCCAGTTTCTCGATATTTTGAAGACATTGAAAAATTCAAAAAACCATGAAAAATCGAGTTCAGACAAAATAAAATAGTTGTAAAAACTTCTCCTTTGTCTACCAGAACCCATAAATACTGGTTGTCCGGGAAGATGAGCGTCAAAAAATCCATGATACCATATGGTGCACAATAGATGAAGTAGAATATTGTCATTATGGAAATCATTTTCGCTATGTGGAGCCTGTAATTTTGGTTTTTGAAGGAGGTGAGGCATCAAAAAATTTTATGGGATTGTTTGGGGAAAAAATCGCGGCCGCATAGCTCAGCCGGAAGCGGTGCTGAACCCCTGATGTTATTCATGAGTTCAACTCCTTATTAAGGTGCTCTAGGCAAAATATCTTCAAAAACTTTTTCAGGAAAAACTTACCTTTTCAAACGCAGATTTTTCTGAATCAACTCTTTGGCAGATTTTCGTATTAGATAGATCAAGGAAATGGCTAAAACCGGGTGAATGAGAATAATCAACAATTGAGTTCCTCCACTGACCAATTCCATTATTTCTAGTTCTTCAAAAATGAAAAACGAAAAATTAACTTTAAAATAAAAAAGAGAAGATAACGTGATGCTAATGGAATAAACAAAAAGGACTATACAGTAACCACATGCTGGTTTTGATATCCATTGATTAGGCCTTGATTTTTTCAGAATCAGTAACCTCAAAAGTGCCAAATACACTCCCAGCCAGACGGATGTTTGCTCCAGAATGTCTCGTTGAAGCTCACGAATCCATAGCTCATCTCCAGATGTTTTTTCGCAGATAAAAGGGGGAAACCAGATGGGTTTAATTTTATCAATAACAATAACGGATAACCTTATCAAATCACTGAAAGCGATTGCAATCAAAATATAGCTTGCGCTACATAGACTTTTGACACAAAATTGAGAGTTGTGAAATGTTGA</canonical>
            <polymorphic>TTCAAGTTACTGTATGTGATACAACTTTTCTAAATTTCCGAAAACCATATAACTTTTTGCCAGTTTCTCGATATTTTGAAGACATTGAAAAATTCAAAAAACCATGAAAAATCGAGTTCAGACAAAATAAAATAGTTGTAAAAACTTCTCCTTTGTCTACCAGAACCCATAAATACTGGTTGTCCGGGAAGATGAGCGTCAAAAAATCCATGATACCATATGGTGCACAATAGATGAAGTAGAATATTGTCATTATGGAAATCATTTTCGCTATGTGGAGCCTGTAATTTTGGTTTTTGAAGGAGGTGAGGCATCAAAAAATTTTATGGGATTGTTTGGGGAAAAAATCGCGGCCGCATAGCTCAGCCGGAAGCGGTGCTGAACCCCTGATGTTATTCATGAGTTCAACTCCTTATTAAGGTGCTCTAGGCAAAATATCTTCAAAAACTTTTTCAGGAAAAACTTACCTTTTCAAACGCAGATTTTTCTGAATCAACTCYTTGGCAGATTTTCGTATTAGATAGATCAAGGAAATGGCTAAAACCGGGTGAATGAGAATAATCAACAATTGAGTTCCTCCACTGACCAATTCCATTATTTCTAGTTCTTCAAAAATGAAAAACGAAAAATTAACTTTAAAATAAAAAAGAGAAGATAACGTGATGCTAATGGAATAAACAAAAAGGACTATACAGTAACCACATGCTGGTTTTGATATCCATTGATTAGGCCTTGATTTTTTCAGAATCAGTAACCTCAAAAGTGCCAAATACACTCCCAGCCAGACGGATGTTTGCTCCAGAATGTCTCGTTGAAGCTCACGAATCCATAGCTCATCTCCAGATGTTTTTTCGCAGATAAAAGGGGGAAACCAGATGGGTTTAATTTTATCAATAACAATAACGGATAACCTTATCAAATCACTGAAAGCGATTGCAATCAAAATATAGCTTGCGCTACATAGACTTTTGACACAAAATTGAGAGTTGTGAAATGTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAGGCAAAATATCTTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CATTAGCATCACGTTATCTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTAGGCAAAATATCTTCAAAAACTTTTTCAGGAAAAACTTACCTTTTCAAACGCAGATTTTTCTGAATCAACTCTTTGGCAGATTTTCGTATTAGATAGATCAAGGAAATGGCTAAAACCGGGTGAATGAGAATAATCAACAATTGAGTTCCTCCACTGACCAATTCCATTATTTCTAGTTCTTCAAAAATGAAAAACGAAAAATTAACTTTAAAATAAAAAAGAGAAGATAACGTGATGCTAATG</canonical_amplicon>
		<polymorphic_amplicon>TCTAGGCAAAATATCTTCAAAAACTTTTTCAGGAAAAACTTACCTTTTCAAACGCAGATTTTTCTGAATCAACTCYTTGGCAGATTTTCGTATTAGATAGATCAAGGAAATGGCTAAAACCGGGTGAATGAGAATAATCAACAATTGAGTTCCTCCACTGACCAATTCCATTATTTCTAGTTCTTCAAAAATGAAAAACGAAAAATTAACTTTAAAATAAAAAAGAGAAGATAACGTGATGCTAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25377</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>172981</contig_pos>
        <strand>+</strand>
        <context>AGAAAACAAC[A/G]AAAAAAACCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAACAGTTTTTTCCGAGATTTGAAACTTGCATGATTCCCAGAAAACAAC</left_flank>
        <right_flank>AAAAAAACCAATAGAAACTGATTTATTTACAAGTCGTTGAAGGTTTCGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTTGAAATTTCAGTATTTTGATGTGAAAATTAAAACTTTTGAAATTCACTACTTGTTATATTATGCTAGTAACCTAGCTAAATTGGCTCAAAGTTAAGAGTTAGGGCTAAGGCTTCCATTTCGGTCGGTCGAAAATCGCCGACCGATAGCCGACCGATTTTGTGCCTTTGCGCATCGAAACACGATTTTTTGCGTACGAAATACTTTATTTTACGACAAACAAGGCACTTAGTGAGTAATTTGTCGTAAAATACAATGCAGCGTATGCAAAAACGTTGACACGCAAATGCACGAAAACGACCGGTTGTCGGTCGGCGGGGTCGGTGGTCGGTGGGTCAGCTAAATTTCCCGACCGAATGGAAGCCTTATTAGGGGCCCTCCTACCGCAAGTTTCCGCAAGTTTCACCTAAAACTGACATTTCTATTTTTGATGATCTGAATGTATGAACAGTTTTTTCCGAGATTTGAAACTTGCATGATTCCCAGAAAACAACAAAAAAAACCAATAGAAACTGATTTATTTACAAGTCGTTGAAGGTTTCGCTAATTCAACCGTGTTCCATGCCCGACAACCATACAATTGTTTAGCAGTTTCTCGATATCTTGAAGACATTGAAAAGTTCAAAAAACAATGAGAAATCGAGTTCAGACAAAATAAAATAGTTGTGAATACTCCTCCTTTGTCTATCAAAACCCATAAATATTGATTTTCCGGGGTTAGGAGAATTACAAAGTCCAGGATACCATATGGTGCACAACAGATAAAGTAGAATATTGTCATGATTAAAATCATTTTTGCCGCGCGGATTCTGAAAATTTAAAGAATTATTTTGAATTAAAATTTCAAAAAACTGGAGTGTGTCTCAAAATGATGTTTTTTTTCAAATAAATAGCCCTTCTATTATAGGTGCTCTTCAATTAGAATGATTCTTCTAATACAGGTTCTACGGTATCCAATATTCGAATTTGAACAGTTTTTACGTTTAGAACTATTT</canonical>
            <polymorphic>ATTTTTTTGAAATTTCAGTATTTTGATGTGAAAATTAAAACTTTTGAAATTCACTACTTGTTATATTATGCTAGTAACCTAGCTAAATTGGCTCAAAGTTAAGAGTTAGGGCTAAGGCTTCCATTTCGGTCGGTCGAAAATCGCCGACCGATAGCCGACCGATTTTGTGCCTTTGCGCATCGAAACACGATTTTTTGCGTACGAAATACTTTATTTTACGACAAACAAGGCACTTAGTGAGTAATTTGTCGTAAAATACAATGCAGCGTATGCAAAAACGTTGACACGCAAATGCACGAAAACGACCGGTTGTCGGTCGGCGGGGTCGGTGGTCGGTGGGTCAGCTAAATTTCCCGACCGAATGGAAGCCTTATTAGGGGCCCTCCTACCGCAAGTTTCCGCAAGTTTCACCTAAAACTGACATTTCTATTTTTGATGATCTGAATGTATGAACAGTTTTTTCCGAGATTTGAAACTTGCATGATTCCCAGAAAACAACRAAAAAAACCAATAGAAACTGATTTATTTACAAGTCGTTGAAGGTTTCGCTAATTCAACCGTGTTCCATGCCCGACAACCATACAATTGTTTAGCAGTTTCTCGATATCTTGAAGACATTGAAAAGTTCAAAAAACAATGAGAAATCGAGTTCAGACAAAATAAAATAGTTGTGAATACTCCTCCTTTGTCTATCAAAACCCATAAATATTGATTTTCCGGGGTTAGGAGAATTACAAAGTCCAGGATACCATATGGTGCACAACAGATAAAGTAGAATATTGTCATGATTAAAATCATTTTTGCCGCGCGGATTCTGAAAATTTAAAGAATTATTTTGAATTAAAATTTCAAAAAACTGGAGTGTGTCTCAAAATGATGTTTTTTTTCAAATAAATAGCCCTTCTATTATAGGTGCTCTTCAATTAGAATGATTCTTCTAATACAGGTTCTACGGTATCCAATATTCGAATTTGAACAGTTTTTACGTTTAGAACTATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGTTTCACCTAAAACTGACAT</pcr_primer_p1>
		<pcr_primer_p2>AACTCGATTTCTCATTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAGTTTCACCTAAAACTGACATTTCTATTTTTGATGATCTGAATGTATGAACAGTTTTTTCCGAGATTTGAAACTTGCATGATTCCCAGAAAACAACAAAAAAAACCAATAGAAACTGATTTATTTACAAGTCGTTGAAGGTTTCGCTAATTCAACCGTGTTCCATGCCCGACAACCATACAATTGTTTAGCAGTTTCTCGATATCTTGAAGACATTGAAAAGTTCAAAAAACAATGAGAAATCGAGTT</canonical_amplicon>
		<polymorphic_amplicon>CAAGTTTCACCTAAAACTGACATTTCTATTTTTGATGATCTGAATGTATGAACAGTTTTTTCCGAGATTTGAAACTTGCATGATTCCCAGAAAACAACRAAAAAAACCAATAGAAACTGATTTATTTACAAGTCGTTGAAGGTTTCGCTAATTCAACCGTGTTCCATGCCCGACAACCATACAATTGTTTAGCAGTTTCTCGATATCTTGAAGACATTGAAAAGTTCAAAAAACAATGAGAAATCGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25378</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>173198</contig_pos>
        <strand>+</strand>
        <context>TATTGATTTT[C/T]CGGGGTTAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTTGTGAATACTCCTCCTTTGTCTATCAAAACCCATAAATATTGATTTT</left_flank>
        <right_flank>CGGGGTTAGGAGAATTACAAAGTCCAGGATACCATATGGTGCACAACAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGACAAACAAGGCACTTAGTGAGTAATTTGTCGTAAAATACAATGCAGCGTATGCAAAAACGTTGACACGCAAATGCACGAAAACGACCGGTTGTCGGTCGGCGGGGTCGGTGGTCGGTGGGTCAGCTAAATTTCCCGACCGAATGGAAGCCTTATTAGGGGCCCTCCTACCGCAAGTTTCCGCAAGTTTCACCTAAAACTGACATTTCTATTTTTGATGATCTGAATGTATGAACAGTTTTTTCCGAGATTTGAAACTTGCATGATTCCCAGAAAACAACAAAAAAAACCAATAGAAACTGATTTATTTACAAGTCGTTGAAGGTTTCGCTAATTCAACCGTGTTCCATGCCCGACAACCATACAATTGTTTAGCAGTTTCTCGATATCTTGAAGACATTGAAAAGTTCAAAAAACAATGAGAAATCGAGTTCAGACAAAATAAAATAGTTGTGAATACTCCTCCTTTGTCTATCAAAACCCATAAATATTGATTTTCCGGGGTTAGGAGAATTACAAAGTCCAGGATACCATATGGTGCACAACAGATAAAGTAGAATATTGTCATGATTAAAATCATTTTTGCCGCGCGGATTCTGAAAATTTAAAGAATTATTTTGAATTAAAATTTCAAAAAACTGGAGTGTGTCTCAAAATGATGTTTTTTTTCAAATAAATAGCCCTTCTATTATAGGTGCTCTTCAATTAGAATGATTCTTCTAATACAGGTTCTACGGTATCCAATATTCGAATTTGAACAGTTTTTACGTTTAGAACTATTTTAAATTTTATTCATTATGAACGAAACTTTGCGTAGGTGGTGGCCAGTGTGTCCTTTTGACACGACTTCGAGAAATTTTTCGAGGAATTTCTCGAATTTTCCAAAAATTGTTCGAAAAAATTTTCGAGACGAATTCATTTTGCAGTGGTGGCCTAACTTTTGCAAATTTGGTTTTCTAGGCCACCACTTTAAAATGACAGAATAAATGAGAAAATAAT</canonical>
            <polymorphic>ACGACAAACAAGGCACTTAGTGAGTAATTTGTCGTAAAATACAATGCAGCGTATGCAAAAACGTTGACACGCAAATGCACGAAAACGACCGGTTGTCGGTCGGCGGGGTCGGTGGTCGGTGGGTCAGCTAAATTTCCCGACCGAATGGAAGCCTTATTAGGGGCCCTCCTACCGCAAGTTTCCGCAAGTTTCACCTAAAACTGACATTTCTATTTTTGATGATCTGAATGTATGAACAGTTTTTTCCGAGATTTGAAACTTGCATGATTCCCAGAAAACAACAAAAAAAACCAATAGAAACTGATTTATTTACAAGTCGTTGAAGGTTTCGCTAATTCAACCGTGTTCCATGCCCGACAACCATACAATTGTTTAGCAGTTTCTCGATATCTTGAAGACATTGAAAAGTTCAAAAAACAATGAGAAATCGAGTTCAGACAAAATAAAATAGTTGTGAATACTCCTCCTTTGTCTATCAAAACCCATAAATATTGATTTTYCGGGGTTAGGAGAATTACAAAGTCCAGGATACCATATGGTGCACAACAGATAAAGTAGAATATTGTCATGATTAAAATCATTTTTGCCGCGCGGATTCTGAAAATTTAAAGAATTATTTTGAATTAAAATTTCAAAAAACTGGAGTGTGTCTCAAAATGATGTTTTTTTTCAAATAAATAGCCCTTCTATTATAGGTGCTCTTCAATTAGAATGATTCTTCTAATACAGGTTCTACGGTATCCAATATTCGAATTTGAACAGTTTTTACGTTTAGAACTATTTTAAATTTTATTCATTATGAACGAAACTTTGCGTAGGTGGTGGCCAGTGTGTCCTTTTGACACGACTTCGAGAAATTTTTCGAGGAATTTCTCGAATTTTCCAAAAATTGTTCGAAAAAATTTTCGAGACGAATTCATTTTGCAGTGGTGGCCTAACTTTTGCAAATTTGGTTTTCTAGGCCACCACTTTAAAATGACAGAATAAATGAGAAAATAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>501 475 24</canonical_bands>
                <polymorphic_bands>525 475</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>494 348 95 63</canonical_bands>
                <polymorphic_bands>842 95 63</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 411 89</canonical_bands>
                <polymorphic_bands>911 89</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAATCGAGTTCAGACAAAATA</pcr_primer_p1>
		<pcr_primer_p2>AAAACATCATTTTGAGACACACT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AGAAATCGAGTTCAGACAAAATAAAATAGTTGTGAATACTCCTCCTTTGTCTATCAAAACCCATAAATATTGATTTTCCGGGGTTAGGAGAATTACAAAGTCCAGGATACCATATGGTGCACAACAGATAAAGTAGAATATTGTCATGATTAAAATCATTTTTGCCGCGCGGATTCTGAAAATTTAAAGAATTATTTTGAATTAAAATTTCAAAAAACTGGAGTGTGTCTCAAAATGATGTTTT</canonical_amplicon>
		<polymorphic_amplicon>AGAAATCGAGTTCAGACAAAATAAAATAGTTGTGAATACTCCTCCTTTGTCTATCAAAACCCATAAATATTGATTTTYCGGGGTTAGGAGAATTACAAAGTCCAGGATACCATATGGTGCACAACAGATAAAGTAGAATATTGTCATGATTAAAATCATTTTTGCCGCGCGGATTCTGAAAATTTAAAGAATTATTTTGAATTAAAATTTCAAAAAACTGGAGTGTGTCTCAAAATGATGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25379</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>173338</contig_pos>
        <strand>+</strand>
        <context>TTTCAAAAAA[C/T]TGGAGTGTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGCGGATTCTGAAAATTTAAAGAATTATTTTGAATTAAAATTTCAAAAAA</left_flank>
        <right_flank>TGGAGTGTGTCTCAAAATGATGTTTTTTTTCAAATAAATAGCCCTTCTAT</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGAATGGAAGCCTTATTAGGGGCCCTCCTACCGCAAGTTTCCGCAAGTTTCACCTAAAACTGACATTTCTATTTTTGATGATCTGAATGTATGAACAGTTTTTTCCGAGATTTGAAACTTGCATGATTCCCAGAAAACAACAAAAAAAACCAATAGAAACTGATTTATTTACAAGTCGTTGAAGGTTTCGCTAATTCAACCGTGTTCCATGCCCGACAACCATACAATTGTTTAGCAGTTTCTCGATATCTTGAAGACATTGAAAAGTTCAAAAAACAATGAGAAATCGAGTTCAGACAAAATAAAATAGTTGTGAATACTCCTCCTTTGTCTATCAAAACCCATAAATATTGATTTTCCGGGGTTAGGAGAATTACAAAGTCCAGGATACCATATGGTGCACAACAGATAAAGTAGAATATTGTCATGATTAAAATCATTTTTGCCGCGCGGATTCTGAAAATTTAAAGAATTATTTTGAATTAAAATTTCAAAAAACTGGAGTGTGTCTCAAAATGATGTTTTTTTTCAAATAAATAGCCCTTCTATTATAGGTGCTCTTCAATTAGAATGATTCTTCTAATACAGGTTCTACGGTATCCAATATTCGAATTTGAACAGTTTTTACGTTTAGAACTATTTTAAATTTTATTCATTATGAACGAAACTTTGCGTAGGTGGTGGCCAGTGTGTCCTTTTGACACGACTTCGAGAAATTTTTCGAGGAATTTCTCGAATTTTCCAAAAATTGTTCGAAAAAATTTTCGAGACGAATTCATTTTGCAGTGGTGGCCTAACTTTTGCAAATTTGGTTTTCTAGGCCACCACTTTAAAATGACAGAATAAATGAGAAAATAATGTCAGCAACGACGAAAAACTGAAAAAAAAGTCGCAAGCGACACTCCGAAATTCCGCATCGCGCATTGTTTAGCACATTTCACGAGAAAATTCGAGGAATCCGTTCCTCGAAAAAAAATTTCGAGGAATTTCTCGAAAATT</canonical>
            <polymorphic>CCGAATGGAAGCCTTATTAGGGGCCCTCCTACCGCAAGTTTCCGCAAGTTTCACCTAAAACTGACATTTCTATTTTTGATGATCTGAATGTATGAACAGTTTTTTCCGAGATTTGAAACTTGCATGATTCCCAGAAAACAACAAAAAAAACCAATAGAAACTGATTTATTTACAAGTCGTTGAAGGTTTCGCTAATTCAACCGTGTTCCATGCCCGACAACCATACAATTGTTTAGCAGTTTCTCGATATCTTGAAGACATTGAAAAGTTCAAAAAACAATGAGAAATCGAGTTCAGACAAAATAAAATAGTTGTGAATACTCCTCCTTTGTCTATCAAAACCCATAAATATTGATTTTCCGGGGTTAGGAGAATTACAAAGTCCAGGATACCATATGGTGCACAACAGATAAAGTAGAATATTGTCATGATTAAAATCATTTTTGCCGCGCGGATTCTGAAAATTTAAAGAATTATTTTGAATTAAAATTTCAAAAAAYTGGAGTGTGTCTCAAAATGATGTTTTTTTTCAAATAAATAGCCCTTCTATTATAGGTGCTCTTCAATTAGAATGATTCTTCTAATACAGGTTCTACGGTATCCAATATTCGAATTTGAACAGTTTTTACGTTTAGAACTATTTTAAATTTTATTCATTATGAACGAAACTTTGCGTAGGTGGTGGCCAGTGTGTCCTTTTGACACGACTTCGAGAAATTTTTCGAGGAATTTCTCGAATTTTCCAAAAATTGTTCGAAAAAATTTTCGAGACGAATTCATTTTGCAGTGGTGGCCTAACTTTTGCAAATTTGGTTTTCTAGGCCACCACTTTAAAATGACAGAATAAATGAGAAAATAATGTCAGCAACGACGAAAAACTGAAAAAAAAGTCGCAAGCGACACTCCGAAATTCCGCATCGCGCATTGTTTAGCACATTTCACGAGAAAATTCGAGGAATCCGTTCCTCGAAAAAAAATTTCGAGGAATTTCTCGAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTGTCTATCAAAACCCATAAA</pcr_primer_p1>
		<pcr_primer_p2>TCATTCTAATTGAAGAGCACCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTTGTCTATCAAAACCCATAAATATTGATTTTCCGGGGTTAGGAGAATTACAAAGTCCAGGATACCATATGGTGCACAACAGATAAAGTAGAATATTGTCATGATTAAAATCATTTTTGCCGCGCGGATTCTGAAAATTTAAAGAATTATTTTGAATTAAAATTTCAAAAAACTGGAGTGTGTCTCAAAATGATGTTTTTTTTCAAATAAATAGCCCTTCTATTATAGGTGCTCTTCAATTAGAATGA</canonical_amplicon>
		<polymorphic_amplicon>CTTTGTCTATCAAAACCCATAAATATTGATTTTCCGGGGTTAGGAGAATTACAAAGTCCAGGATACCATATGGTGCACAACAGATAAAGTAGAATATTGTCATGATTAAAATCATTTTTGCCGCGCGGATTCTGAAAATTTAAAGAATTATTTTGAATTAAAATTTCAAAAAAYTGGAGTGTGTCTCAAAATGATGTTTTTTTTCAAATAAATAGCCCTTCTATTATAGGTGCTCTTCAATTAGAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25380</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>187727</contig_pos>
        <strand>+</strand>
        <context>AAATTTCCAG[A/T]TTCCTAGCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGGTTCTTAAATTTTCAGATACTTAAATTTTTCGAATTCAAAATTTCCAG</left_flank>
        <right_flank>TTCCTAGCTTTTCCGATTTTGAAACTCTGAGATTCTGAGTTTCCAAGACT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGAGATTCTGTAATTCTGAAAGATTCTGAGACTCTGAGACTCTGAGATTCTGAAATTCTGATACACTGAAAATCTGAGATTTTGAGATTCTGCGATTCTGAGATTCTGAGATTCTGAGATCCCGAGATTCTGAGATTCTGAGATTCTGAGATTCCGAGATTCTGAGATTCTAATATATCCCGATTCCTAGATTTTCCGATTCTGAAATTCTGAAAATCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGTGATTCTGAGAATCTGAAAATCTGAGATTCTGAGATTCTGAGATTTTGTGATTCTGAGATTCTGAGATTCCGAGATTCTGAGATTCTGATATTCTCAGCTTCTGAAAACAAGAAAACAACAGTATGAGATCTCATTTCATTCAATTGACAAGTATCGAGAGGTAAAATCTGCTTTTCAGAAATTCCGCGGTTCTTAAATTTTCAGATACTTAAATTTTTCGAATTCAAAATTTCCAGATTCCTAGCTTTTCCGATTTTGAAACTCTGAGATTCTGAGTTTCCAAGACTTTGACAGCCTGTACTCTGTACTGTACTCTGTCTGTAAATTCGTATGTCCCATTTCTGATGTATTCAATCCCACCTATTTTTCCGAGAGGTTTCGGATAAACATTCCGAATTTCGTAACATTGTTTTGACCACTTATCATTCTTCGTTTGATGACTGGTCATTCGAGCTTTTTTCTGCCACGTCATCATCTTTTTTCTCTAGGTCTCCTCTCTTGTCATACAGTCTTTTTTTTTTCGATGGACGTCCTCTCCACACACTCTTTCAATTTCTCTATTTCTTTTTTTTTCTCGGAGAAAACAGCCCGCATAAAAGCCTGGTCATTTCCTCATATTTCTCAGTTTTTAAAGCAGAAAATTGTTCCTCGAAGTTTATTTTGTTTCTGATCATCTTTTCTTTCTTTTTTTATGATTTTAGCTGATAGACATCTTGATATACAGACATTCGGATAGA</canonical>
            <polymorphic>TCTGAGATTCTGTAATTCTGAAAGATTCTGAGACTCTGAGACTCTGAGATTCTGAAATTCTGATACACTGAAAATCTGAGATTTTGAGATTCTGCGATTCTGAGATTCTGAGATTCTGAGATCCCGAGATTCTGAGATTCTGAGATTCTGAGATTCCGAGATTCTGAGATTCTAATATATCCCGATTCCTAGATTTTCCGATTCTGAAATTCTGAAAATCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGTGATTCTGAGAATCTGAAAATCTGAGATTCTGAGATTCTGAGATTTTGTGATTCTGAGATTCTGAGATTCCGAGATTCTGAGATTCTGATATTCTCAGCTTCTGAAAACAAGAAAACAACAGTATGAGATCTCATTTCATTCAATTGACAAGTATCGAGAGGTAAAATCTGCTTTTCAGAAATTCCGCGGTTCTTAAATTTTCAGATACTTAAATTTTTCGAATTCAAAATTTCCAGWTTCCTAGCTTTTCCGATTTTGAAACTCTGAGATTCTGAGTTTCCAAGACTTTGACAGCCTGTACTCTGTACTGTACTCTGTCTGTAAATTCGTATGTCCCATTTCTGATGTATTCAATCCCACCTATTTTTCCGAGAGGTTTCGGATAAACATTCCGAATTTCGTAACATTGTTTTGACCACTTATCATTCTTCGTTTGATGACTGGTCATTCGAGCTTTTTTCTGCCACGTCATCATCTTTTTTCTCTAGGTCTCCTCTCTTGTCATACAGTCTTTTTTTTTTCGATGGACGTCCTCTCCACACACTCTTTCAATTTCTCTATTTCTTTTTTTTTCTCGGAGAAAACAGCCCGCATAAAAGCCTGGTCATTTCCTCATATTTCTCAGTTTTTAAAGCAGAAAATTGTTCCTCGAAGTTTATTTTGTTTCTGATCATCTTTTCTTTCTTTTTTTATGATTTTAGCTGATAGACATCTTGATATACAGACATTCGGATAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>469 155 40 32 24 18 16 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6</canonical_bands>
                <polymorphic_bands>469 187 40 24 18 16 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>480 237 123 78 58 24</canonical_bands>
                <polymorphic_bands>558 237 123 58 24</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>469 155 40 32 24 24 18 16 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6</canonical_bands>
                <polymorphic_bands>469 187 40 24 24 18 16 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAACAAGAAAACAACAGTATGA</pcr_primer_p1>
		<pcr_primer_p2>GAATACATCAGAAATGGGACATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAACAAGAAAACAACAGTATGAGATCTCATTTCATTCAATTGACAAGTATCGAGAGGTAAAATCTGCTTTTCAGAAATTCCGCGGTTCTTAAATTTTCAGATACTTAAATTTTTCGAATTCAAAATTTCCAGATTCCTAGCTTTTCCGATTTTGAAACTCTGAGATTCTGAGTTTCCAAGACTTTGACAGCCTGTACTCTGTACTGTACTCTGTCTGTAAATTCGTATGTCCCATTTCTGATGTATTC</canonical_amplicon>
		<polymorphic_amplicon>GAAAACAAGAAAACAACAGTATGAGATCTCATTTCATTCAATTGACAAGTATCGAGAGGTAAAATCTGCTTTTCAGAAATTCCGCGGTTCTTAAATTTTCAGATACTTAAATTTTTCGAATTCAAAATTTCCAGWTTCCTAGCTTTTCCGATTTTGAAACTCTGAGATTCTGAGTTTCCAAGACTTTGACAGCCTGTACTCTGTACTGTACTCTGTCTGTAAATTCGTATGTCCCATTTCTGATGTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25381</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>188055</contig_pos>
        <strand>+</strand>
        <context>TCTCTATTTC[A/G]TTTTTTTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTTCGATGGACGTCCTCTCCACACACTCTTTCAATTTCTCTATTTC</left_flank>
        <right_flank>TTTTTTTTCTCGGAGAAAACAGCCCGCATAAAAGCCTGGTCATTTCCTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCCGAGATTCTGAGATTCTGATATTCTCAGCTTCTGAAAACAAGAAAACAACAGTATGAGATCTCATTTCATTCAATTGACAAGTATCGAGAGGTAAAATCTGCTTTTCAGAAATTCCGCGGTTCTTAAATTTTCAGATACTTAAATTTTTCGAATTCAAAATTTCCAGATTCCTAGCTTTTCCGATTTTGAAACTCTGAGATTCTGAGTTTCCAAGACTTTGACAGCCTGTACTCTGTACTGTACTCTGTCTGTAAATTCGTATGTCCCATTTCTGATGTATTCAATCCCACCTATTTTTCCGAGAGGTTTCGGATAAACATTCCGAATTTCGTAACATTGTTTTGACCACTTATCATTCTTCGTTTGATGACTGGTCATTCGAGCTTTTTTCTGCCACGTCATCATCTTTTTTCTCTAGGTCTCCTCTCTTGTCATACAGTCTTTTTTTTTTCGATGGACGTCCTCTCCACACACTCTTTCAATTTCTCTATTTCTTTTTTTTTCTCGGAGAAAACAGCCCGCATAAAAGCCTGGTCATTTCCTCATATTTCTCAGTTTTTAAAGCAGAAAATTGTTCCTCGAAGTTTATTTTGTTTCTGATCATCTTTTCTTTCTTTTTTTATGATTTTAGCTGATAGACATCTTGATATACAGACATTCGGATAGATCCTCTCTCTCACTCTCTCCGTACTGAAAGACATCTGGATATACAGACACTCGGGACAGCCTCTCGCACTTTCTCTCTCTCACTCGCCTTCTCCAAGTCACCGTTACTCACATACTGTTAGTTACAGTACGAGCACAACCGAACTTGAAGCCTTCGCTTCCGACGTCGCCGCTACCACGAACCCAATCGTGATGATCGAGATGGTCCCGGTCAACAAGAAATATCTCCCAAGCAAGCACCAAGATCTTCTTCTGAAATCCTGAAATTCTGACATTCTGAAAGGTTCAGATTCTGCTTTTCAAATATTCCGTGGTTCTTAAATTTTCAG</canonical>
            <polymorphic>ATTCCGAGATTCTGAGATTCTGATATTCTCAGCTTCTGAAAACAAGAAAACAACAGTATGAGATCTCATTTCATTCAATTGACAAGTATCGAGAGGTAAAATCTGCTTTTCAGAAATTCCGCGGTTCTTAAATTTTCAGATACTTAAATTTTTCGAATTCAAAATTTCCAGATTCCTAGCTTTTCCGATTTTGAAACTCTGAGATTCTGAGTTTCCAAGACTTTGACAGCCTGTACTCTGTACTGTACTCTGTCTGTAAATTCGTATGTCCCATTTCTGATGTATTCAATCCCACCTATTTTTCCGAGAGGTTTCGGATAAACATTCCGAATTTCGTAACATTGTTTTGACCACTTATCATTCTTCGTTTGATGACTGGTCATTCGAGCTTTTTTCTGCCACGTCATCATCTTTTTTCTCTAGGTCTCCTCTCTTGTCATACAGTCTTTTTTTTTTCGATGGACGTCCTCTCCACACACTCTTTCAATTTCTCTATTTCRTTTTTTTTCTCGGAGAAAACAGCCCGCATAAAAGCCTGGTCATTTCCTCATATTTCTCAGTTTTTAAAGCAGAAAATTGTTCCTCGAAGTTTATTTTGTTTCTGATCATCTTTTCTTTCTTTTTTTATGATTTTAGCTGATAGACATCTTGATATACAGACATTCGGATAGATCCTCTCTCTCACTCTCTCCGTACTGAAAGACATCTGGATATACAGACACTCGGGACAGCCTCTCGCACTTTCTCTCTCTCACTCGCCTTCTCCAAGTCACCGTTACTCACATACTGTTAGTTACAGTACGAGCACAACCGAACTTGAAGCCTTCGCTTCCGACGTCGCCGCTACCACGAACCCAATCGTGATGATCGAGATGGTCCCGGTCAACAAGAAATATCTCCCAAGCAAGCACCAAGATCTTCTTCTGAAATCCTGAAATTCTGACATTCTGAAAGGTTCAGATTCTGCTTTTCAAATATTCCGTGGTTCTTAAATTTTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTATCATTCTTCGTTTGATGA</pcr_primer_p1>
		<pcr_primer_p2>AAACAAAATAAACTTCGAGGAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTTATCATTCTTCGTTTGATGACTGGTCATTCGAGCTTTTTTCTGCCACGTCATCATCTTTTTTCTCTAGGTCTCCTCTCTTGTCATACAGTCTTTTTTTTTTCGATGGACGTCCTCTCCACACACTCTTTCAATTTCTCTATTTCTTTTTTTTTCTCGGAGAAAACAGCCCGCATAAAAGCCTGGTCATTTCCTCATATTTCTCAGTTTTTAAAGCAGAAAATTGTTCCTCGAAGTTTATTTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>ACTTATCATTCTTCGTTTGATGACTGGTCATTCGAGCTTTTTTCTGCCACGTCATCATCTTTTTTCTCTAGGTCTCCTCTCTTGTCATACAGTCTTTTTTTTTTCGATGGACGTCCTCTCCACACACTCTTTCAATTTCTCTATTTCRTTTTTTTTCTCGGAGAAAACAGCCCGCATAAAAGCCTGGTCATTTCCTCATATTTCTCAGTTTTTAAAGCAGAAAATTGTTCCTCGAAGTTTATTTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25382</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>190536</contig_pos>
        <strand>+</strand>
        <context>TATTGTCTAT[C/G]AGAACCTGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGAGAATCATAGAGGAGTTTCATTCGTCAGGAAAAAACGTTATTGTCTAT</left_flank>
        <right_flank>AGAACCTGCTGTTTTGGACCACTATCCTTATCACCGAGTTCGACCGTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGTTTGAAACTGAGCTGTCCGCTCTTTATCTGGTGAGAAATGGGAAATTGTAGCTTACAATTAGTTTATACTCTCAGATGACGCCCAATATCCATTCAAGTCTCACCAATCAGAAATACATCTATAAATCCCAGCTTCTTGCGATCCTTCAGAAAATCGGTGAGGTTCCGATAATCCAGTTGTTGCCCAGAGAAGACTCCAAGTACTATGTCCTTCATTCGATCATAGCCATCTACCTGAGAACCAAAGAAAGCCAAATGAAGGATCCATTTGAGTTGATGACCTATGACGACGATCAGCTCGCGCACTTGGAAGCTATCATCAGCGTCCAGACTTTGACGTTCCAGGGAGAAGATTTGGATCCGTCGACCAGCTTGGAAAACATCATCGCCAAATTCAAAGCCCTTTTGCCTACGCACCCGAAGGATCAAAAACACAAGCGACTTCAGAGAATCATAGAGGAGTTTCATTCGTCAGGAAAAAACGTTATTGTCTATCAGAACCTGCTGTTTTGGACCACTATCCTTATCACCGAGTTCGACCGTTTTTTGGCTGCTCTTCCAGCTTATCAAGGCCCTACTCTTGTCAGAGTCTTCCATGACGACTTTGCCGGAAAATTCGTTTTGGAAAGGGAACTACTCGGGCTGGGAAATCCTGAAACAGTCGAAATCGAGACATTGAGAACTGTGGACTTCAAGAAGATTCGTGAATGGCAGAAAGAGAACAACCTTCCAGTTTCGCCAATGGGACCCGACCCGTATATGATGGACCAATATGAGGTAGGAAGAACGACATCTAGAAATTTAGAAAAAAAAATACAATTTTTCAGTTTGTCATAATGAGGATCCCAAGAACCTTCTTCCGCTCAATCCCGATCCCAGCCTGGTCCAAAAAGTATTTCCACCACGTGACTGAAGTTTTGATTGAGATACTTAGAGACATCATTTCAATCAGATGTGTCTTCCAGAACCTTCGTATGAAGCGTCTAGAAAAGCTCT</canonical>
            <polymorphic>GAAGTTTGAAACTGAGCTGTCCGCTCTTTATCTGGTGAGAAATGGGAAATTGTAGCTTACAATTAGTTTATACTCTCAGATGACGCCCAATATCCATTCAAGTCTCACCAATCAGAAATACATCTATAAATCCCAGCTTCTTGCGATCCTTCAGAAAATCGGTGAGGTTCCGATAATCCAGTTGTTGCCCAGAGAAGACTCCAAGTACTATGTCCTTCATTCGATCATAGCCATCTACCTGAGAACCAAAGAAAGCCAAATGAAGGATCCATTTGAGTTGATGACCTATGACGACGATCAGCTCGCGCACTTGGAAGCTATCATCAGCGTCCAGACTTTGACGTTCCAGGGAGAAGATTTGGATCCGTCGACCAGCTTGGAAAACATCATCGCCAAATTCAAAGCCCTTTTGCCTACGCACCCGAAGGATCAAAAACACAAGCGACTTCAGAGAATCATAGAGGAGTTTCATTCGTCAGGAAAAAACGTTATTGTCTATSAGAACCTGCTGTTTTGGACCACTATCCTTATCACCGAGTTCGACCGTTTTTTGGCTGCTCTTCCAGCTTATCAAGGCCCTACTCTTGTCAGAGTCTTCCATGACGACTTTGCCGGAAAATTCGTTTTGGAAAGGGAACTACTCGGGCTGGGAAATCCTGAAACAGTCGAAATCGAGACATTGAGAACTGTGGACTTCAAGAAGATTCGTGAATGGCAGAAAGAGAACAACCTTCCAGTTTCGCCAATGGGACCCGACCCGTATATGATGGACCAATATGAGGTAGGAAGAACGACATCTAGAAATTTAGAAAAAAAAATACAATTTTTCAGTTTGTCATAATGAGGATCCCAAGAACCTTCTTCCGCTCAATCCCGATCCCAGCCTGGTCCAAAAAGTATTTCCACCACGTGACTGAAGTTTTGATTGAGATACTTAGAGACATCATTTCAATCAGATGTGTCTTCCAGAACCTTCGTATGAAGCGTCTAGAAAAGCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAGNNNCTG</site>
                <isoschizomers>
                    <enzyme>AlwNI</enzyme>
                    <enzyme>CaiI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>365 279 89 78 51 45 39 36 18</canonical_bands>
                <polymorphic_bands>365 279 140 78 45 39 36 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCGACTTCAGAGAATCATAGA</pcr_primer_p1>
		<pcr_primer_p2>ACAGTTCTCAATGTCTCGATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCGACTTCAGAGAATCATAGAGGAGTTTCATTCGTCAGGAAAAAACGTTATTGTCTATCAGAACCTGCTGTTTTGGACCACTATCCTTATCACCGAGTTCGACCGTTTTTTGGCTGCTCTTCCAGCTTATCAAGGCCCTACTCTTGTCAGAGTCTTCCATGACGACTTTGCCGGAAAATTCGTTTTGGAAAGGGAACTACTCGGGCTGGGAAATCCTGAAACAGTCGAAATCGAGACATTGAGAACTGT</canonical_amplicon>
		<polymorphic_amplicon>AGCGACTTCAGAGAATCATAGAGGAGTTTCATTCGTCAGGAAAAAACGTTATTGTCTATSAGAACCTGCTGTTTTGGACCACTATCCTTATCACCGAGTTCGACCGTTTTTTGGCTGCTCTTCCAGCTTATCAAGGCCCTACTCTTGTCAGAGTCTTCCATGACGACTTTGCCGGAAAATTCGTTTTGGAAAGGGAACTACTCGGGCTGGGAAATCCTGAAACAGTCGAAATCGAGACATTGAGAACTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25383</snp_id>
        <super_contig>c001300716.Contig3</super_contig>
        <contig_pos>197813</contig_pos>
        <strand>+</strand>
        <context>TTTTTCTCAC[C/G]TCCAAGTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAGGAACCGAGATTATTGAGCTCGTCTGGCGTTCAATAAGTTTTTCTCAC</left_flank>
        <right_flank>TCCAAGTTTTGAAGCTTGAGCGAAAGCACGATCCGGATATCAAGACAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATCAATTTTATTTCGGTTACTGTCGAAGACATCAAAAAGTGATCATCTGATAAACTATTTCTGATAATATCGTAAACATTTTATCAGTTGATCAATTTTGATATCTCTCAGAGGTACTGGGATAATTTTGCTAAAGATTAAAGTGCTATTTGGGCTTAAATATCTTGGTTCCTTCAAAAGATATCAAGAAACTCCCAACTGATAAAATATTTATGATAAAATCACCAACATTTTATCAGCGGATACAATTTTGAAATCACTCATAGAAATATAGATAATTAAGCTCAAAGATCACGTACAGGACTACGGTGTACCAAAATGAAGCTCTACTTTTGAGCACCATTATCTTGGCTCCTTTGAAAGATTTCAAGAAACTCCCAACTGATGAAATATTCATCATAGTATCACCAACATTTTATCAGTTAAAAAATTTTTTCATATCTTTCAAAGGAACCGAGATTATTGAGCTCGTCTGGCGTTCAATAAGTTTTTCTCACCTCCAAGTTTTGAAGCTTGAGCGAAAGCACGATCCGGATATCAAGACAATACATTGGTCTTTTATCCTGGAGAATCTCCTCGAGCTGTACAGTATCCATTTCACACCGTTTCATCTCTCTCAACAGCTCAAATCCAAGAACATAACTGTTTTTTTCCTCCTTGAACAAACGAACGAAAGCAGTTTTTGGACCCTGAACTACAGGATAAGGAGTGAACCACGACTTGTTGTTATTGATAAAATTGTTGAATTCGACAGTGATAATATACATCATGTTAATCAAGTAGTCATAAAACGTATGGTTATTGTGCACTGGTCGTTCCTCGTGACTAATTATCAGGACTTTGCGGAGGCTTGTAAATTCTGGATCATATTTATTGACTGGCATCATCGCTTTGATTGTCTCGAAAACATATTCAATCGTCTTCTGCTTCTTCTGCGTTATTTTAAACTTTCTACCCGTATGCCTCGCCAGTCTGAATCTATCGGTGACGTGCTTTTG</canonical>
            <polymorphic>GAATCAATTTTATTTCGGTTACTGTCGAAGACATCAAAAAGTGATCATCTGATAAACTATTTCTGATAATATCGTAAACATTTTATCAGTTGATCAATTTTGATATCTCTCAGAGGTACTGGGATAATTTTGCTAAAGATTAAAGTGCTATTTGGGCTTAAATATCTTGGTTCCTTCAAAAGATATCAAGAAACTCCCAACTGATAAAATATTTATGATAAAATCACCAACATTTTATCAGCGGATACAATTTTGAAATCACTCATAGAAATATAGATAATTAAGCTCAAAGATCACGTACAGGACTACGGTGTACCAAAATGAAGCTCTACTTTTGAGCACCATTATCTTGGCTCCTTTGAAAGATTTCAAGAAACTCCCAACTGATGAAATATTCATCATAGTATCACCAACATTTTATCAGTTAAAAAATTTTTTCATATCTTTCAAAGGAACCGAGATTATTGAGCTCGTCTGGCGTTCAATAAGTTTTTCTCACSTCCAAGTTTTGAAGCTTGAGCGAAAGCACGATCCGGATATCAAGACAATACATTGGTCTTTTATCCTGGAGAATCTCCTCGAGCTGTACAGTATCCATTTCACACCGTTTCATCTCTCTCAACAGCTCAAATCCAAGAACATAACTGTTTTTTTCCTCCTTGAACAAACGAACGAAAGCAGTTTTTGGACCCTGAACTACAGGATAAGGAGTGAACCACGACTTGTTGTTATTGATAAAATTGTTGAATTCGACAGTGATAATATACATCATGTTAATCAAGTAGTCATAAAACGTATGGTTATTGTGCACTGGTCGTTCCTCGTGACTAATTATCAGGACTTTGCGGAGGCTTGTAAATTCTGGATCATATTTATTGACTGGCATCATCGCTTTGATTGTCTCGAAAACATATTCAATCGTCTTCTGCTTCTTCTGCGTTATTTTAAACTTTCTACCCGTATGCCTCGCCAGTCTGAATCTATCGGTGACGTGCTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTACCAAAATGAAGCTCTACT</pcr_primer_p1>
		<pcr_primer_p2>CCAGGATAAAAGACCAATGTAT</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>GTGTACCAAAATGAAGCTCTACTTTTGAGCACCATTATCTTGGCTCCTTTGAAAGATTTCAAGAAACTCCCAACTGATGAAATATTCATCATAGTATCACCAACATTTTATCAGTTAAAAAATTTTTTCATATCTTTCAAAGGAACCGAGATTATTGAGCTCGTCTGGCGTTCAATAAGTTTTTCTCACCTCCAAGTTTTGAAGCTTGAGCGAAAGCACGATCCGGATATCAAGACAATACATTGGTCTTTTATCCTGG</canonical_amplicon>
		<polymorphic_amplicon>GTGTACCAAAATGAAGCTCTACTTTTGAGCACCATTATCTTGGCTCCTTTGAAAGATTTCAAGAAACTCCCAACTGATGAAATATTCATCATAGTATCACCAACATTTTATCAGTTAAAAAATTTTTTCATATCTTTCAAAGGAACCGAGATTATTGAGCTCGTCTGGCGTTCAATAAGTTTTTCTCACSTCCAAGTTTTGAAGCTTGAGCGAAAGCACGATCCGGATATCAAGACAATACATTGGTCTTTTATCCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25384</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>46225</contig_pos>
        <strand>+</strand>
        <context>CAAAAATTCG[A/G]AAATTTCGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCG</left_flank>
        <right_flank>AAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGATAGTGTTCGATGAACATCCAGTTCCACTTGATTCCATTCTTTATGATTTTTCAATTCTTCAAGTGATAATTCTGGTTGATCCTGGAAAGAACAAATTTTGAACTTTAGGAGCAAAACATAGAATTTTGAGCATTTTAGGTACAAAAATCCAAATTTTTACAAATTTACAAATTTTTTCAATGAAAAATGAGCCAAATTTTCGATTTTTAGGTCATTTTATCGATTATTTTAGAGCTATTTTCAAGTTTGGGTCAATTTTTTAACATGAACAATTAATCCAAAATTATAAGTTTTCGAATAAAAATGGCGAAAATTTGAACTTTATGAGACTTTTGACATATAATTTGAAGGGAAATATGGAAATTTTTATATTTTTTTAACTTCACAAAATCCGAACTTTTATCCATTTTCCCCCTTAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCCCATTTTTCGGGTCGAATTTCATAAATGTTCTGGATTTTTTGCTGTTTTCAGAGTAATTTTCATAACTTTTACAGTCAAATTTCGCAGATTTTTTAATCAAAATTTCGTGATTTCTTGTGAATTTTTTCAATTTTTTTTCTGGATTGATTTTTATGAATTTTCAACTTTTTTACCTCAAAAATCGGCGTTTCCTCGTCAAAATCCGACTGCGCCGACTCGAAATCCGAATCGTAGGACGATGAGACGTCGTCTAGAAGTTTCAAAATATCAGTTTTTTGAAATTTGTTACTTTTTACTTACCCAAATCATCATTTTGCACCAAATT</canonical>
            <polymorphic>CGAGATAGTGTTCGATGAACATCCAGTTCCACTTGATTCCATTCTTTATGATTTTTCAATTCTTCAAGTGATAATTCTGGTTGATCCTGGAAAGAACAAATTTTGAACTTTAGGAGCAAAACATAGAATTTTGAGCATTTTAGGTACAAAAATCCAAATTTTTACAAATTTACAAATTTTTTCAATGAAAAATGAGCCAAATTTTCGATTTTTAGGTCATTTTATCGATTATTTTAGAGCTATTTTCAAGTTTGGGTCAATTTTTTAACATGAACAATTAATCCAAAATTATAAGTTTTCGAATAAAAATGGCGAAAATTTGAACTTTATGAGACTTTTGACATATAATTTGAAGGGAAATATGGAAATTTTTATATTTTTTTAACTTCACAAAATCCGAACTTTTATCCATTTTCCCCCTTAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGRAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCCCATTTTTCGGGTCGAATTTCATAAATGTTCTGGATTTTTTGCTGTTTTCAGAGTAATTTTCATAACTTTTACAGTCAAATTTCGCAGATTTTTTAATCAAAATTTCGTGATTTCTTGTGAATTTTTTCAATTTTTTTTCTGGATTGATTTTTATGAATTTTCAACTTTTTTACCTCAAAAATCGGCGTTTCCTCGTCAAAATCCGACTGCGCCGACTCGAAATCCGAATCGTAGGACGATGAGACGTCGTCTAGAAGTTTCAAAATATCAGTTTTTTGAAATTTGTTACTTTTTACTTACCCAAATCATCATTTTGCACCAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAAACTTGCACAAAAATAAGC</pcr_primer_p1>
		<pcr_primer_p2>GGAAAAATGAAACTAAAAATCAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCC</canonical_amplicon>
		<polymorphic_amplicon>TAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGRAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25385</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>46288</contig_pos>
        <strand>+</strand>
        <context>TTTCCAGATR[A/G]ATTCTTCTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATG</left_flank>
        <right_flank>ATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAGTGATAATTCTGGTTGATCCTGGAAAGAACAAATTTTGAACTTTAGGAGCAAAACATAGAATTTTGAGCATTTTAGGTACAAAAATCCAAATTTTTACAAATTTACAAATTTTTTCAATGAAAAATGAGCCAAATTTTCGATTTTTAGGTCATTTTATCGATTATTTTAGAGCTATTTTCAAGTTTGGGTCAATTTTTTAACATGAACAATTAATCCAAAATTATAAGTTTTCGAATAAAAATGGCGAAAATTTGAACTTTATGAGACTTTTGACATATAATTTGAAGGGAAATATGGAAATTTTTATATTTTTTTAACTTCACAAAATCCGAACTTTTATCCATTTTCCCCCTTAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCCCATTTTTCGGGTCGAATTTCATAAATGTTCTGGATTTTTTGCTGTTTTCAGAGTAATTTTCATAACTTTTACAGTCAAATTTCGCAGATTTTTTAATCAAAATTTCGTGATTTCTTGTGAATTTTTTCAATTTTTTTTCTGGATTGATTTTTATGAATTTTCAACTTTTTTACCTCAAAAATCGGCGTTTCCTCGTCAAAATCCGACTGCGCCGACTCGAAATCCGAATCGTAGGACGATGAGACGTCGTCTAGAAGTTTCAAAATATCAGTTTTTTGAAATTTGTTACTTTTTACTTACCCAAATCATCATTTTGCACCAAATTCGCCGATAAAACCGGCCAAATCGTTGCTCGAAACTCGTCGTCCACGAGGCCGCCGGAGCTGAT</canonical>
            <polymorphic>TCAAGTGATAATTCTGGTTGATCCTGGAAAGAACAAATTTTGAACTTTAGGAGCAAAACATAGAATTTTGAGCATTTTAGGTACAAAAATCCAAATTTTTACAAATTTACAAATTTTTTCAATGAAAAATGAGCCAAATTTTCGATTTTTAGGTCATTTTATCGATTATTTTAGAGCTATTTTCAAGTTTGGGTCAATTTTTTAACATGAACAATTAATCCAAAATTATAAGTTTTCGAATAAAAATGGCGAAAATTTGAACTTTATGAGACTTTTGACATATAATTTGAAGGGAAATATGGAAATTTTTATATTTTTTTAACTTCACAAAATCCGAACTTTTATCCATTTTCCCCCTTAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGRATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCCCATTTTTCGGGTCGAATTTCATAAATGTTCTGGATTTTTTGCTGTTTTCAGAGTAATTTTCATAACTTTTACAGTCAAATTTCGCAGATTTTTTAATCAAAATTTCGTGATTTCTTGTGAATTTTTTCAATTTTTTTTCTGGATTGATTTTTATGAATTTTCAACTTTTTTACCTCAAAAATCGGCGTTTCCTCGTCAAAATCCGACTGCGCCGACTCGAAATCCGAATCGTAGGACGATGAGACGTCGTCTAGAAGTTTCAAAATATCAGTTTTTTGAAATTTGTTACTTTTTACTTACCCAAATCATCATTTTGCACCAAATTCGCCGATAAAACCGGCCAAATCGTTGCTCGAAACTCGTCGTCCACGAGGCCGCCGGAGCTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>500 326 162 12</canonical_bands>
                <polymorphic_bands>826 162 12</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 338 162</canonical_bands>
                <polymorphic_bands>838 162</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAAACTTGCACAAAAATAAGC</pcr_primer_p1>
		<pcr_primer_p2>GGAAAAATGAAACTAAAAATCAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCC</canonical_amplicon>
		<polymorphic_amplicon>TAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGRATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25386</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>46319</contig_pos>
        <strand>+</strand>
        <context>TTTTTGTTGT[A/G]TTAAGAACGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGT</left_flank>
        <right_flank>TTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAAATTTTGAACTTTAGGAGCAAAACATAGAATTTTGAGCATTTTAGGTACAAAAATCCAAATTTTTACAAATTTACAAATTTTTTCAATGAAAAATGAGCCAAATTTTCGATTTTTAGGTCATTTTATCGATTATTTTAGAGCTATTTTCAAGTTTGGGTCAATTTTTTAACATGAACAATTAATCCAAAATTATAAGTTTTCGAATAAAAATGGCGAAAATTTGAACTTTATGAGACTTTTGACATATAATTTGAAGGGAAATATGGAAATTTTTATATTTTTTTAACTTCACAAAATCCGAACTTTTATCCATTTTCCCCCTTAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCCCATTTTTCGGGTCGAATTTCATAAATGTTCTGGATTTTTTGCTGTTTTCAGAGTAATTTTCATAACTTTTACAGTCAAATTTCGCAGATTTTTTAATCAAAATTTCGTGATTTCTTGTGAATTTTTTCAATTTTTTTTCTGGATTGATTTTTATGAATTTTCAACTTTTTTACCTCAAAAATCGGCGTTTCCTCGTCAAAATCCGACTGCGCCGACTCGAAATCCGAATCGTAGGACGATGAGACGTCGTCTAGAAGTTTCAAAATATCAGTTTTTTGAAATTTGTTACTTTTTACTTACCCAAATCATCATTTTGCACCAAATTCGCCGATAAAACCGGCCAAATCGTTGCTCGAAACTCGTCGTCCACGAGGCCGCCGGAGCTGATCGCAAAATCACGAAGTTCGTCTGAAAATTTT</canonical>
            <polymorphic>AACAAATTTTGAACTTTAGGAGCAAAACATAGAATTTTGAGCATTTTAGGTACAAAAATCCAAATTTTTACAAATTTACAAATTTTTTCAATGAAAAATGAGCCAAATTTTCGATTTTTAGGTCATTTTATCGATTATTTTAGAGCTATTTTCAAGTTTGGGTCAATTTTTTAACATGAACAATTAATCCAAAATTATAAGTTTTCGAATAAAAATGGCGAAAATTTGAACTTTATGAGACTTTTGACATATAATTTGAAGGGAAATATGGAAATTTTTATATTTTTTTAACTTCACAAAATCCGAACTTTTATCCATTTTCCCCCTTAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTRTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCCCATTTTTCGGGTCGAATTTCATAAATGTTCTGGATTTTTTGCTGTTTTCAGAGTAATTTTCATAACTTTTACAGTCAAATTTCGCAGATTTTTTAATCAAAATTTCGTGATTTCTTGTGAATTTTTTCAATTTTTTTTCTGGATTGATTTTTATGAATTTTCAACTTTTTTACCTCAAAAATCGGCGTTTCCTCGTCAAAATCCGACTGCGCCGACTCGAAATCCGAATCGTAGGACGATGAGACGTCGTCTAGAAGTTTCAAAATATCAGTTTTTTGAAATTTGTTACTTTTTACTTACCCAAATCATCATTTTGCACCAAATTCGCCGATAAAACCGGCCAAATCGTTGCTCGAAACTCGTCGTCCACGAGGCCGCCGGAGCTGATCGCAAAATCACGAAGTTCGTCTGAAAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAAACTTGCACAAAAATAAGC</pcr_primer_p1>
		<pcr_primer_p2>GGAAAAATGAAACTAAAAATCAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCC</canonical_amplicon>
		<polymorphic_amplicon>TAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTRTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25387</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>46343</contig_pos>
        <strand>+</strand>
        <context>TCATRATTTT[A/G]AAGCCAGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTT</left_flank>
        <right_flank>AAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACATAGAATTTTGAGCATTTTAGGTACAAAAATCCAAATTTTTACAAATTTACAAATTTTTTCAATGAAAAATGAGCCAAATTTTCGATTTTTAGGTCATTTTATCGATTATTTTAGAGCTATTTTCAAGTTTGGGTCAATTTTTTAACATGAACAATTAATCCAAAATTATAAGTTTTCGAATAAAAATGGCGAAAATTTGAACTTTATGAGACTTTTGACATATAATTTGAAGGGAAATATGGAAATTTTTATATTTTTTTAACTTCACAAAATCCGAACTTTTATCCATTTTCCCCCTTAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCCCATTTTTCGGGTCGAATTTCATAAATGTTCTGGATTTTTTGCTGTTTTCAGAGTAATTTTCATAACTTTTACAGTCAAATTTCGCAGATTTTTTAATCAAAATTTCGTGATTTCTTGTGAATTTTTTCAATTTTTTTTCTGGATTGATTTTTATGAATTTTCAACTTTTTTACCTCAAAAATCGGCGTTTCCTCGTCAAAATCCGACTGCGCCGACTCGAAATCCGAATCGTAGGACGATGAGACGTCGTCTAGAAGTTTCAAAATATCAGTTTTTTGAAATTTGTTACTTTTTACTTACCCAAATCATCATTTTGCACCAAATTCGCCGATAAAACCGGCCAAATCGTTGCTCGAAACTCGTCGTCCACGAGGCCGCCGGAGCTGATCGCAAAATCACGAAGTTCGTCTGAAAATTTTGGGCGGGGATTTTGAATTTTTGAA</canonical>
            <polymorphic>AAACATAGAATTTTGAGCATTTTAGGTACAAAAATCCAAATTTTTACAAATTTACAAATTTTTTCAATGAAAAATGAGCCAAATTTTCGATTTTTAGGTCATTTTATCGATTATTTTAGAGCTATTTTCAAGTTTGGGTCAATTTTTTAACATGAACAATTAATCCAAAATTATAAGTTTTCGAATAAAAATGGCGAAAATTTGAACTTTATGAGACTTTTGACATATAATTTGAAGGGAAATATGGAAATTTTTATATTTTTTTAACTTCACAAAATCCGAACTTTTATCCATTTTCCCCCTTAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTRAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCCCATTTTTCGGGTCGAATTTCATAAATGTTCTGGATTTTTTGCTGTTTTCAGAGTAATTTTCATAACTTTTACAGTCAAATTTCGCAGATTTTTTAATCAAAATTTCGTGATTTCTTGTGAATTTTTTCAATTTTTTTTCTGGATTGATTTTTATGAATTTTCAACTTTTTTACCTCAAAAATCGGCGTTTCCTCGTCAAAATCCGACTGCGCCGACTCGAAATCCGAATCGTAGGACGATGAGACGTCGTCTAGAAGTTTCAAAATATCAGTTTTTTGAAATTTGTTACTTTTTACTTACCCAAATCATCATTTTGCACCAAATTCGCCGATAAAACCGGCCAAATCGTTGCTCGAAACTCGTCGTCCACGAGGCCGCCGGAGCTGATCGCAAAATCACGAAGTTCGTCTGAAAATTTTGGGCGGGGATTTTGAATTTTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>350 174 151 147 104 39 22 13</canonical_bands>
                <polymorphic_bands>350 174 173 147 104 39 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAAACTTGCACAAAAATAAGC</pcr_primer_p1>
		<pcr_primer_p2>GGAAAAATGAAACTAAAAATCAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTTAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCC</canonical_amplicon>
		<polymorphic_amplicon>TAAAAACTTGCACAAAAATAAGCTTTTTTCAGGTAATTTTTCATGATTTTTGAGAAAAATTTTTCGGCCAAAAATTCGTAAATTTCGAGTAAATTGTGGATTTTTTGGACTGATTTTTCAGATTTTCAAGTTTTCCAGATGGATTCTTCTGAATTTTCGGTTTTTTTGTTGTTTTAAGAACGATTTTCATGATTTTRAAGCCAGTTTTCGCAGACTTTTCATTGGAATTTCTTGATTTTTAGTTTCATTTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25388</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>68596</contig_pos>
        <strand>+</strand>
        <context>TTGGGATTTT[A/C]GAAAGAWTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTGAATTTCGTAGTTCTGAAATTGGATTATTTTGGGATTTTTGGGATTTT</left_flank>
        <right_flank>GAAAGATTTTTTAGATTTCAGACTTTCAAAACTCAAAAATTTGGATTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGTGGAAGATGATGAATTTGAGGGGATTCTGATGGTGGTGTCGACGGAATTTTTGTGGAATTTGGAAAATCGGGAATTAGGGGCGTGGCTTCAGCATCGACTTCGGAGTTGTAGCCGAGTTGGTGAGGGGACATGTTATCGTAGATTGGAATGCTGAAAATCGATATTTTGAGATTCTGAATATTTAAAATTCAGAGATTTCGGGATTTTAAGGTTCTAAATTTTTGAAATTTCGAACAAAAAATTTTGGTCCGAAGTACAGATTCTTAGAATTCTGAAAGTTTAAAATTTCTAAAAATTTGAGTTTTTGAAAATTTTCAAATTCATATAATTTTCCTTACTTATAACTCGGCGGTGTGGGATGTCGAATCACTTTTGGTTTTTCCGGTTTTTTCAAATTTTCGTTTTTCAATTTTTTCGATTTCAGCATCGCCGCAGACTCGTCTCCGTGAATTTCGTAGTTCTGAAATTGGATTATTTTGGGATTTTTGGGATTTTCGAAAGATTTTTTAGATTTCAGACTTTCAAAACTCAAAAATTTGGATTTTTTGAAGTATGTTTGGGATTTTCTCAGAACAAATTTCGAATTTTTAATTCTGGAGATCTGAATTTTCTAGAATTTTCAGATTTTTATAATTTCTGAATCTTGGAATTTGGGATTTTTCAGATTTTTAGAGAGGTAATTTTTTGAGAATTTCAAATTTTTAGGTTGCAGAGATGAGAATTTTCAAAGAACTCGAAAGTTGAAAAGTTTTGAAATTTTTTGAACTTTCAAAACTTTAAAAAATAAGAATTTTCAGAAATTTTCCCAGAATTTCCCAAAAACTCTCCCATACTTTCGGCGGAAATGGTCGAACTTGTTGTGTGTACTCCAGAAGGCTGCGCAAATCGACATGATGAATTTTGAATAAATATTTCAAATCGATCGCCGAATTCAAGCCGATTCCCGTTCTTCCAGCTGCAAAAAATTTAGATTTTCGGAAATTTTGAATTTTTTAA</canonical>
            <polymorphic>CGGTGGAAGATGATGAATTTGAGGGGATTCTGATGGTGGTGTCGACGGAATTTTTGTGGAATTTGGAAAATCGGGAATTAGGGGCGTGGCTTCAGCATCGACTTCGGAGTTGTAGCCGAGTTGGTGAGGGGACATGTTATCGTAGATTGGAATGCTGAAAATCGATATTTTGAGATTCTGAATATTTAAAATTCAGAGATTTCGGGATTTTAAGGTTCTAAATTTTTGAAATTTCGAACAAAAAATTTTGGTCCGAAGTACAGATTCTTAGAATTCTGAAAGTTTAAAATTTCTAAAAATTTGAGTTTTTGAAAATTTTCAAATTCATATAATTTTCCTTACTTATAACTCGGCGGTGTGGGATGTCGAATCACTTTTGGTTTTTCCGGTTTTTTCAAATTTTCGTTTTTCAATTTTTTCGATTTCAGCATCGCCGCAGACTCGTCTCCGTGAATTTCGTAGTTCTGAAATTGGATTATTTTGGGATTTTTGGGATTTTMGAAAGATTTTTTAGATTTCAGACTTTCAAAACTCAAAAATTTGGATTTTTTGAAGTATGTTTGGGATTTTCTCAGAACAAATTTCGAATTTTTAATTCTGGAGATCTGAATTTTCTAGAATTTTCAGATTTTTATAATTTCTGAATCTTGGAATTTGGGATTTTTCAGATTTTTAGAGAGGTAATTTTTTGAGAATTTCAAATTTTTAGGTTGCAGAGATGAGAATTTTCAAAGAACTCGAAAGTTGAAAAGTTTTGAAATTTTTTGAACTTTCAAAACTTTAAAAAATAAGAATTTTCAGAAATTTTCCCAGAATTTCCCAAAAACTCTCCCATACTTTCGGCGGAAATGGTCGAACTTGTTGTGTGTACTCCAGAAGGCTGCGCAAATCGACATGATGAATTTTGAATAAATATTTCAAATCGATCGCCGAATTCAAGCCGATTCCCGTTCTTCCAGCTGCAAAAAATTTAGATTTTCGGAAATTTTGAATTTTTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>416 265 234 85</canonical_bands>
                <polymorphic_bands>416 350 234</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>154 132 115 85 80 76 72 64 56 53 43 37 33</canonical_bands>
                <polymorphic_bands>165 154 132 115 76 72 64 56 53 43 37 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAATCACTTTTGGTTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CTAGAAAATTCAGATCTCCAGAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGAATCACTTTTGGTTTTTCCGGTTTTTTCAAATTTTCGTTTTTCAATTTTTTCGATTTCAGCATCGCCGCAGACTCGTCTCCGTGAATTTCGTAGTTCTGAAATTGGATTATTTTGGGATTTTTGGGATTTTCGAAAGATTTTTTAGATTTCAGACTTTCAAAACTCAAAAATTTGGATTTTTTGAAGTATGTTTGGGATTTTCTCAGAACAAATTTCGAATTTTTAATTCTGGAGATCTGAATTTTCTAG</canonical_amplicon>
		<polymorphic_amplicon>CGAATCACTTTTGGTTTTTCCGGTTTTTTCAAATTTTCGTTTTTCAATTTTTTCGATTTCAGCATCGCCGCAGACTCGTCTCCGTGAATTTCGTAGTTCTGAAATTGGATTATTTTGGGATTTTTGGGATTTTMGAAAGATTTTTTAGATTTCAGACTTTCAAAACTCAAAAATTTGGATTTTTTGAAGTATGTTTGGGATTTTCTCAGAACAAATTTCGAATTTTTAATTCTGGAGATCTGAATTTTCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25389</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>68603</contig_pos>
        <strand>+</strand>
        <context>TTTMGAAAGA[A/T]TTTTTAGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGTAGTTCTGAAATTGGATTATTTTGGGATTTTTGGGATTTTCGAAAGA</left_flank>
        <right_flank>TTTTTAGATTTCAGACTTTCAAAACTCAAAAATTTGGATTTTTTGAAGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATGATGAATTTGAGGGGATTCTGATGGTGGTGTCGACGGAATTTTTGTGGAATTTGGAAAATCGGGAATTAGGGGCGTGGCTTCAGCATCGACTTCGGAGTTGTAGCCGAGTTGGTGAGGGGACATGTTATCGTAGATTGGAATGCTGAAAATCGATATTTTGAGATTCTGAATATTTAAAATTCAGAGATTTCGGGATTTTAAGGTTCTAAATTTTTGAAATTTCGAACAAAAAATTTTGGTCCGAAGTACAGATTCTTAGAATTCTGAAAGTTTAAAATTTCTAAAAATTTGAGTTTTTGAAAATTTTCAAATTCATATAATTTTCCTTACTTATAACTCGGCGGTGTGGGATGTCGAATCACTTTTGGTTTTTCCGGTTTTTTCAAATTTTCGTTTTTCAATTTTTTCGATTTCAGCATCGCCGCAGACTCGTCTCCGTGAATTTCGTAGTTCTGAAATTGGATTATTTTGGGATTTTTGGGATTTTCGAAAGATTTTTTAGATTTCAGACTTTCAAAACTCAAAAATTTGGATTTTTTGAAGTATGTTTGGGATTTTCTCAGAACAAATTTCGAATTTTTAATTCTGGAGATCTGAATTTTCTAGAATTTTCAGATTTTTATAATTTCTGAATCTTGGAATTTGGGATTTTTCAGATTTTTAGAGAGGTAATTTTTTGAGAATTTCAAATTTTTAGGTTGCAGAGATGAGAATTTTCAAAGAACTCGAAAGTTGAAAAGTTTTGAAATTTTTTGAACTTTCAAAACTTTAAAAAATAAGAATTTTCAGAAATTTTCCCAGAATTTCCCAAAAACTCTCCCATACTTTCGGCGGAAATGGTCGAACTTGTTGTGTGTACTCCAGAAGGCTGCGCAAATCGACATGATGAATTTTGAATAAATATTTCAAATCGATCGCCGAATTCAAGCCGATTCCCGTTCTTCCAGCTGCAAAAAATTTAGATTTTCGGAAATTTTGAATTTTTTAAAAAATGT</canonical>
            <polymorphic>AGATGATGAATTTGAGGGGATTCTGATGGTGGTGTCGACGGAATTTTTGTGGAATTTGGAAAATCGGGAATTAGGGGCGTGGCTTCAGCATCGACTTCGGAGTTGTAGCCGAGTTGGTGAGGGGACATGTTATCGTAGATTGGAATGCTGAAAATCGATATTTTGAGATTCTGAATATTTAAAATTCAGAGATTTCGGGATTTTAAGGTTCTAAATTTTTGAAATTTCGAACAAAAAATTTTGGTCCGAAGTACAGATTCTTAGAATTCTGAAAGTTTAAAATTTCTAAAAATTTGAGTTTTTGAAAATTTTCAAATTCATATAATTTTCCTTACTTATAACTCGGCGGTGTGGGATGTCGAATCACTTTTGGTTTTTCCGGTTTTTTCAAATTTTCGTTTTTCAATTTTTTCGATTTCAGCATCGCCGCAGACTCGTCTCCGTGAATTTCGTAGTTCTGAAATTGGATTATTTTGGGATTTTTGGGATTTTCGAAAGAWTTTTTAGATTTCAGACTTTCAAAACTCAAAAATTTGGATTTTTTGAAGTATGTTTGGGATTTTCTCAGAACAAATTTCGAATTTTTAATTCTGGAGATCTGAATTTTCTAGAATTTTCAGATTTTTATAATTTCTGAATCTTGGAATTTGGGATTTTTCAGATTTTTAGAGAGGTAATTTTTTGAGAATTTCAAATTTTTAGGTTGCAGAGATGAGAATTTTCAAAGAACTCGAAAGTTGAAAAGTTTTGAAATTTTTTGAACTTTCAAAACTTTAAAAAATAAGAATTTTCAGAAATTTTCCCAGAATTTCCCAAAAACTCTCCCATACTTTCGGCGGAAATGGTCGAACTTGTTGTGTGTACTCCAGAAGGCTGCGCAAATCGACATGATGAATTTTGAATAAATATTTCAAATCGATCGCCGAATTCAAGCCGATTCCCGTTCTTCCAGCTGCAAAAAATTTAGATTTTCGGAAATTTTGAATTTTTTAAAAAATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATCACTTTTGGTTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CTAGAAAATTCAGATCTCCAGAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGAATCACTTTTGGTTTTTCCGGTTTTTTCAAATTTTCGTTTTTCAATTTTTTCGATTTCAGCATCGCCGCAGACTCGTCTCCGTGAATTTCGTAGTTCTGAAATTGGATTATTTTGGGATTTTTGGGATTTTCGAAAGATTTTTTAGATTTCAGACTTTCAAAACTCAAAAATTTGGATTTTTTGAAGTATGTTTGGGATTTTCTCAGAACAAATTTCGAATTTTTAATTCTGGAGATCTGAATTTTCTAG</canonical_amplicon>
		<polymorphic_amplicon>CGAATCACTTTTGGTTTTTCCGGTTTTTTCAAATTTTCGTTTTTCAATTTTTTCGATTTCAGCATCGCCGCAGACTCGTCTCCGTGAATTTCGTAGTTCTGAAATTGGATTATTTTGGGATTTTTGGGATTTTCGAAAGAWTTTTTAGATTTCAGACTTTCAAAACTCAAAAATTTGGATTTTTTGAAGTATGTTTGGGATTTTCTCAGAACAAATTTCGAATTTTTAATTCTGGAGATCTGAATTTTCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25390</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>68639</contig_pos>
        <strand>+</strand>
        <context>TCAAAAATTT[G/T]GATTTTTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGATTTTCGAAAGATTTTTTAGATTTCAGACTTTCAAAACTCAAAAATTT</left_flank>
        <right_flank>GATTTTTTGAAGTATGTTTGGGATTTTCTCAGAACAAATTTCGAATTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGGAATTTTTGTGGAATTTGGAAAATCGGGAATTAGGGGCGTGGCTTCAGCATCGACTTCGGAGTTGTAGCCGAGTTGGTGAGGGGACATGTTATCGTAGATTGGAATGCTGAAAATCGATATTTTGAGATTCTGAATATTTAAAATTCAGAGATTTCGGGATTTTAAGGTTCTAAATTTTTGAAATTTCGAACAAAAAATTTTGGTCCGAAGTACAGATTCTTAGAATTCTGAAAGTTTAAAATTTCTAAAAATTTGAGTTTTTGAAAATTTTCAAATTCATATAATTTTCCTTACTTATAACTCGGCGGTGTGGGATGTCGAATCACTTTTGGTTTTTCCGGTTTTTTCAAATTTTCGTTTTTCAATTTTTTCGATTTCAGCATCGCCGCAGACTCGTCTCCGTGAATTTCGTAGTTCTGAAATTGGATTATTTTGGGATTTTTGGGATTTTCGAAAGATTTTTTAGATTTCAGACTTTCAAAACTCAAAAATTTGGATTTTTTGAAGTATGTTTGGGATTTTCTCAGAACAAATTTCGAATTTTTAATTCTGGAGATCTGAATTTTCTAGAATTTTCAGATTTTTATAATTTCTGAATCTTGGAATTTGGGATTTTTCAGATTTTTAGAGAGGTAATTTTTTGAGAATTTCAAATTTTTAGGTTGCAGAGATGAGAATTTTCAAAGAACTCGAAAGTTGAAAAGTTTTGAAATTTTTTGAACTTTCAAAACTTTAAAAAATAAGAATTTTCAGAAATTTTCCCAGAATTTCCCAAAAACTCTCCCATACTTTCGGCGGAAATGGTCGAACTTGTTGTGTGTACTCCAGAAGGCTGCGCAAATCGACATGATGAATTTTGAATAAATATTTCAAATCGATCGCCGAATTCAAGCCGATTCCCGTTCTTCCAGCTGCAAAAAATTTAGATTTTCGGAAATTTTGAATTTTTTAAAAAATGTTGTTCTTCTGTGCATCCTGATGTCCACAGATGTTTC</canonical>
            <polymorphic>GACGGAATTTTTGTGGAATTTGGAAAATCGGGAATTAGGGGCGTGGCTTCAGCATCGACTTCGGAGTTGTAGCCGAGTTGGTGAGGGGACATGTTATCGTAGATTGGAATGCTGAAAATCGATATTTTGAGATTCTGAATATTTAAAATTCAGAGATTTCGGGATTTTAAGGTTCTAAATTTTTGAAATTTCGAACAAAAAATTTTGGTCCGAAGTACAGATTCTTAGAATTCTGAAAGTTTAAAATTTCTAAAAATTTGAGTTTTTGAAAATTTTCAAATTCATATAATTTTCCTTACTTATAACTCGGCGGTGTGGGATGTCGAATCACTTTTGGTTTTTCCGGTTTTTTCAAATTTTCGTTTTTCAATTTTTTCGATTTCAGCATCGCCGCAGACTCGTCTCCGTGAATTTCGTAGTTCTGAAATTGGATTATTTTGGGATTTTTGGGATTTTCGAAAGATTTTTTAGATTTCAGACTTTCAAAACTCAAAAATTTKGATTTTTTGAAGTATGTTTGGGATTTTCTCAGAACAAATTTCGAATTTTTAATTCTGGAGATCTGAATTTTCTAGAATTTTCAGATTTTTATAATTTCTGAATCTTGGAATTTGGGATTTTTCAGATTTTTAGAGAGGTAATTTTTTGAGAATTTCAAATTTTTAGGTTGCAGAGATGAGAATTTTCAAAGAACTCGAAAGTTGAAAAGTTTTGAAATTTTTTGAACTTTCAAAACTTTAAAAAATAAGAATTTTCAGAAATTTTCCCAGAATTTCCCAAAAACTCTCCCATACTTTCGGCGGAAATGGTCGAACTTGTTGTGTGTACTCCAGAAGGCTGCGCAAATCGACATGATGAATTTTGAATAAATATTTCAAATCGATCGCCGAATTCAAGCCGATTCCCGTTCTTCCAGCTGCAAAAAATTTAGATTTTCGGAAATTTTGAATTTTTTAAAAAATGTTGTTCTTCTGTGCATCCTGATGTCCACAGATGTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATCACTTTTGGTTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CTAGAAAATTCAGATCTCCAGAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGAATCACTTTTGGTTTTTCCGGTTTTTTCAAATTTTCGTTTTTCAATTTTTTCGATTTCAGCATCGCCGCAGACTCGTCTCCGTGAATTTCGTAGTTCTGAAATTGGATTATTTTGGGATTTTTGGGATTTTCGAAAGATTTTTTAGATTTCAGACTTTCAAAACTCAAAAATTTGGATTTTTTGAAGTATGTTTGGGATTTTCTCAGAACAAATTTCGAATTTTTAATTCTGGAGATCTGAATTTTCTAG</canonical_amplicon>
		<polymorphic_amplicon>CGAATCACTTTTGGTTTTTCCGGTTTTTTCAAATTTTCGTTTTTCAATTTTTTCGATTTCAGCATCGCCGCAGACTCGTCTCCGTGAATTTCGTAGTTCTGAAATTGGATTATTTTGGGATTTTTGGGATTTTCGAAAGATTTTTTAGATTTCAGACTTTCAAAACTCAAAAATTTKGATTTTTTGAAGTATGTTTGGGATTTTCTCAGAACAAATTTCGAATTTTTAATTCTGGAGATCTGAATTTTCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25391</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>69552</contig_pos>
        <strand>+</strand>
        <context>CTCGCTGCGG[G/T]ACMTTGYTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAAATCGAAAATCATTGCAAAATACAGTAGTTGCAGTTCTCGCTGCGG</left_flank>
        <right_flank>ACATTGCTACAAAACGCGGCATGCGCCTTTAAACGGACTACTGTAGGTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGCTGCAAAAAATTTAGATTTTCGGAAATTTTGAATTTTTTAAAAAATGTTGTTCTTCTGTGCATCCTGATGTCCACAGATGTTTCAAAAACATTCTTAAAGATTTTTAGATCGTCTTAAATTTATAAAGCCGAAAATTGCTTTTCCTGAAAAATCGATTTTTCAATTTTTTTTCCAGAATTTTTCCATATTTCCCGAACGAACAATTCTCCAGAAGTGCTCGACACGTGTCACCCATCGTCGTCAGCTTATCGGCGACTAGACCAACGAGCCGGGCATGCGCAGCTTCGTCGATGCTCGTAAAATGCAAATTGTCGACAATACGGCTTATCGAATCGCGTAAATTCTAGAAAATTCGAATTTTTCGACCCTAAAAACGGGTTTTTCGGCAAAAACTCACATGTAAAACTGCATTTTCCGGTGTCATCGTGCGCAAGTAACTTCTGAAAAAAAATCGAAAATCATTGCAAAATACAGTAGTTGCAGTTCTCGCTGCGGTACATTGCTACAAAACGCGGCATGCGCCTTTAAACGGACTACTGTAGGTGAATTTTTTGCAGATGTTTTGTTTTTTTTGTCGTTTTCGGCCTATTTCCACCTATTTCCGTAGATTTTTTTGCAAAAAAGAGAGAAAAGTTGAAAAAGAAGATGTTTATTGATGTCTGGGTGCAGTGCGGACCATTCCGAAACAAGCAAAGTGCTCAAATAGACAAAAAAGAATACAATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAAACTAAAGAAACAAGAAGATTAACATACAGAAATCTGGAAAAAAGTGAGTAAATTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATC</canonical>
            <polymorphic>CAGCTGCAAAAAATTTAGATTTTCGGAAATTTTGAATTTTTTAAAAAATGTTGTTCTTCTGTGCATCCTGATGTCCACAGATGTTTCAAAAACATTCTTAAAGATTTTTAGATCGTCTTAAATTTATAAAGCCGAAAATTGCTTTTCCTGAAAAATCGATTTTTCAATTTTTTTTCCAGAATTTTTCCATATTTCCCGAACGAACAATTCTCCAGAAGTGCTCGACACGTGTCACCCATCGTCGTCAGCTTATCGGCGACTAGACCAACGAGCCGGGCATGCGCAGCTTCGTCGATGCTCGTAAAATGCAAATTGTCGACAATACGGCTTATCGAATCGCGTAAATTCTAGAAAATTCGAATTTTTCGACCCTAAAAACGGGTTTTTCGGCAAAAACTCACATGTAAAACTGCATTTTCCGGTGTCATCGTGCGCAAGTAACTTCTGAAAAAAAATCGAAAATCATTGCAAAATACAGTAGTTGCAGTTCTCGCTGCGGKACATTGCTACAAAACGCGGCATGCGCCTTTAAACGGACTACTGTAGGTGAATTTTTTGCAGATGTTTTGTTTTTTTTGTCGTTTTCGGCCTATTTCCACCTATTTCCGTAGATTTTTTTGCAAAAAAGAGAGAAAAGTTGAAAAAGAAGATGTTTATTGATGTCTGGGTGCAGTGCGGACCATTCCGAAACAAGCAAAGTGCTCAAATAGACAAAAAAGAATACAATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAAACTAAAGAAACAAGAAGATTAACATACAGAAATCTGGAAAAAAGTGAGTAAATTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATCGAATCGCGTAAATTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAACAAAACATCTGCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTATCGAATCGCGTAAATTCTAGAAAATTCGAATTTTTCGACCCTAAAAACGGGTTTTTCGGCAAAAACTCACATGTAAAACTGCATTTTCCGGTGTCATCGTGCGCAAGTAACTTCTGAAAAAAAATCGAAAATCATTGCAAAATACAGTAGTTGCAGTTCTCGCTGCGGTACATTGCTACAAAACGCGGCATGCGCCTTTAAACGGACTACTGTAGGTGAATTTTTTGCAGATGTTTTGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTATCGAATCGCGTAAATTCTAGAAAATTCGAATTTTTCGACCCTAAAAACGGGTTTTTCGGCAAAAACTCACATGTAAAACTGCATTTTCCGGTGTCATCGTGCGCAAGTAACTTCTGAAAAAAAATCGAAAATCATTGCAAAATACAGTAGTTGCAGTTCTCGCTGCGGKACATTGCTACAAAACGCGGCATGCGCCTTTAAACGGACTACTGTAGGTGAATTTTTTGCAGATGTTTTGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25392</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>69555</contig_pos>
        <strand>+</strand>
        <context>GCTGCGGKAC[A/C]TTGYTACAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATCGAAAATCATTGCAAAATACAGTAGTTGCAGTTCTCGCTGCGGTAC</left_flank>
        <right_flank>TTGCTACAAAACGCGGCATGCGCCTTTAAACGGACTACTGTAGGTGAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGCAAAAAATTTAGATTTTCGGAAATTTTGAATTTTTTAAAAAATGTTGTTCTTCTGTGCATCCTGATGTCCACAGATGTTTCAAAAACATTCTTAAAGATTTTTAGATCGTCTTAAATTTATAAAGCCGAAAATTGCTTTTCCTGAAAAATCGATTTTTCAATTTTTTTTCCAGAATTTTTCCATATTTCCCGAACGAACAATTCTCCAGAAGTGCTCGACACGTGTCACCCATCGTCGTCAGCTTATCGGCGACTAGACCAACGAGCCGGGCATGCGCAGCTTCGTCGATGCTCGTAAAATGCAAATTGTCGACAATACGGCTTATCGAATCGCGTAAATTCTAGAAAATTCGAATTTTTCGACCCTAAAAACGGGTTTTTCGGCAAAAACTCACATGTAAAACTGCATTTTCCGGTGTCATCGTGCGCAAGTAACTTCTGAAAAAAAATCGAAAATCATTGCAAAATACAGTAGTTGCAGTTCTCGCTGCGGTACATTGCTACAAAACGCGGCATGCGCCTTTAAACGGACTACTGTAGGTGAATTTTTTGCAGATGTTTTGTTTTTTTTGTCGTTTTCGGCCTATTTCCACCTATTTCCGTAGATTTTTTTGCAAAAAAGAGAGAAAAGTTGAAAAAGAAGATGTTTATTGATGTCTGGGTGCAGTGCGGACCATTCCGAAACAAGCAAAGTGCTCAAATAGACAAAAAAGAATACAATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAAACTAAAGAAACAAGAAGATTAACATACAGAAATCTGGAAAAAAGTGAGTAAATTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAG</canonical>
            <polymorphic>CTGCAAAAAATTTAGATTTTCGGAAATTTTGAATTTTTTAAAAAATGTTGTTCTTCTGTGCATCCTGATGTCCACAGATGTTTCAAAAACATTCTTAAAGATTTTTAGATCGTCTTAAATTTATAAAGCCGAAAATTGCTTTTCCTGAAAAATCGATTTTTCAATTTTTTTTCCAGAATTTTTCCATATTTCCCGAACGAACAATTCTCCAGAAGTGCTCGACACGTGTCACCCATCGTCGTCAGCTTATCGGCGACTAGACCAACGAGCCGGGCATGCGCAGCTTCGTCGATGCTCGTAAAATGCAAATTGTCGACAATACGGCTTATCGAATCGCGTAAATTCTAGAAAATTCGAATTTTTCGACCCTAAAAACGGGTTTTTCGGCAAAAACTCACATGTAAAACTGCATTTTCCGGTGTCATCGTGCGCAAGTAACTTCTGAAAAAAAATCGAAAATCATTGCAAAATACAGTAGTTGCAGTTCTCGCTGCGGTACMTTGCTACAAAACGCGGCATGCGCCTTTAAACGGACTACTGTAGGTGAATTTTTTGCAGATGTTTTGTTTTTTTTGTCGTTTTCGGCCTATTTCCACCTATTTCCGTAGATTTTTTTGCAAAAAAGAGAGAAAAGTTGAAAAAGAAGATGTTTATTGATGTCTGGGTGCAGTGCGGACCATTCCGAAACAAGCAAAGTGCTCAAATAGACAAAAAAGAATACAATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAAACTAAAGAAACAAGAAGATTAACATACAGAAATCTGGAAAAAAGTGAGTAAATTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATCGAATCGCGTAAATTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAACAAAACATCTGCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTATCGAATCGCGTAAATTCTAGAAAATTCGAATTTTTCGACCCTAAAAACGGGTTTTTCGGCAAAAACTCACATGTAAAACTGCATTTTCCGGTGTCATCGTGCGCAAGTAACTTCTGAAAAAAAATCGAAAATCATTGCAAAATACAGTAGTTGCAGTTCTCGCTGCGGTACATTGCTACAAAACGCGGCATGCGCCTTTAAACGGACTACTGTAGGTGAATTTTTTGCAGATGTTTTGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTATCGAATCGCGTAAATTCTAGAAAATTCGAATTTTTCGACCCTAAAAACGGGTTTTTCGGCAAAAACTCACATGTAAAACTGCATTTTCCGGTGTCATCGTGCGCAAGTAACTTCTGAAAAAAAATCGAAAATCATTGCAAAATACAGTAGTTGCAGTTCTCGCTGCGGTACMTTGCTACAAAACGCGGCATGCGCCTTTAAACGGACTACTGTAGGTGAATTTTTTGCAGATGTTTTGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25393</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>69559</contig_pos>
        <strand>+</strand>
        <context>CGGKACMTTG[C/T]TACAAAACGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAAAATCATTGCAAAATACAGTAGTTGCAGTTCTCGCTGCGGTACATTG</left_flank>
        <right_flank>TACAAAACGCGGCATGCGCCTTTAAACGGACTACTGTAGGTGAATTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAATTTAGATTTTCGGAAATTTTGAATTTTTTAAAAAATGTTGTTCTTCTGTGCATCCTGATGTCCACAGATGTTTCAAAAACATTCTTAAAGATTTTTAGATCGTCTTAAATTTATAAAGCCGAAAATTGCTTTTCCTGAAAAATCGATTTTTCAATTTTTTTTCCAGAATTTTTCCATATTTCCCGAACGAACAATTCTCCAGAAGTGCTCGACACGTGTCACCCATCGTCGTCAGCTTATCGGCGACTAGACCAACGAGCCGGGCATGCGCAGCTTCGTCGATGCTCGTAAAATGCAAATTGTCGACAATACGGCTTATCGAATCGCGTAAATTCTAGAAAATTCGAATTTTTCGACCCTAAAAACGGGTTTTTCGGCAAAAACTCACATGTAAAACTGCATTTTCCGGTGTCATCGTGCGCAAGTAACTTCTGAAAAAAAATCGAAAATCATTGCAAAATACAGTAGTTGCAGTTCTCGCTGCGGTACATTGCTACAAAACGCGGCATGCGCCTTTAAACGGACTACTGTAGGTGAATTTTTTGCAGATGTTTTGTTTTTTTTGTCGTTTTCGGCCTATTTCCACCTATTTCCGTAGATTTTTTTGCAAAAAAGAGAGAAAAGTTGAAAAAGAAGATGTTTATTGATGTCTGGGTGCAGTGCGGACCATTCCGAAACAAGCAAAGTGCTCAAATAGACAAAAAAGAATACAATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAAACTAAAGAAACAAGAAGATTAACATACAGAAATCTGGAAAAAAGTGAGTAAATTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAGTCGA</canonical>
            <polymorphic>AAAAAATTTAGATTTTCGGAAATTTTGAATTTTTTAAAAAATGTTGTTCTTCTGTGCATCCTGATGTCCACAGATGTTTCAAAAACATTCTTAAAGATTTTTAGATCGTCTTAAATTTATAAAGCCGAAAATTGCTTTTCCTGAAAAATCGATTTTTCAATTTTTTTTCCAGAATTTTTCCATATTTCCCGAACGAACAATTCTCCAGAAGTGCTCGACACGTGTCACCCATCGTCGTCAGCTTATCGGCGACTAGACCAACGAGCCGGGCATGCGCAGCTTCGTCGATGCTCGTAAAATGCAAATTGTCGACAATACGGCTTATCGAATCGCGTAAATTCTAGAAAATTCGAATTTTTCGACCCTAAAAACGGGTTTTTCGGCAAAAACTCACATGTAAAACTGCATTTTCCGGTGTCATCGTGCGCAAGTAACTTCTGAAAAAAAATCGAAAATCATTGCAAAATACAGTAGTTGCAGTTCTCGCTGCGGTACATTGYTACAAAACGCGGCATGCGCCTTTAAACGGACTACTGTAGGTGAATTTTTTGCAGATGTTTTGTTTTTTTTGTCGTTTTCGGCCTATTTCCACCTATTTCCGTAGATTTTTTTGCAAAAAAGAGAGAAAAGTTGAAAAAGAAGATGTTTATTGATGTCTGGGTGCAGTGCGGACCATTCCGAAACAAGCAAAGTGCTCAAATAGACAAAAAAGAATACAATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAAACTAAAGAAACAAGAAGATTAACATACAGAAATCTGGAAAAAAGTGAGTAAATTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAGTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATCGAATCGCGTAAATTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAACAAAACATCTGCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTATCGAATCGCGTAAATTCTAGAAAATTCGAATTTTTCGACCCTAAAAACGGGTTTTTCGGCAAAAACTCACATGTAAAACTGCATTTTCCGGTGTCATCGTGCGCAAGTAACTTCTGAAAAAAAATCGAAAATCATTGCAAAATACAGTAGTTGCAGTTCTCGCTGCGGTACATTGCTACAAAACGCGGCATGCGCCTTTAAACGGACTACTGTAGGTGAATTTTTTGCAGATGTTTTGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTATCGAATCGCGTAAATTCTAGAAAATTCGAATTTTTCGACCCTAAAAACGGGTTTTTCGGCAAAAACTCACATGTAAAACTGCATTTTCCGGTGTCATCGTGCGCAAGTAACTTCTGAAAAAAAATCGAAAATCATTGCAAAATACAGTAGTTGCAGTTCTCGCTGCGGTACATTGYTACAAAACGCGGCATGCGCCTTTAAACGGACTACTGTAGGTGAATTTTTTGCAGATGTTTTGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25394</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>69675</contig_pos>
        <strand>+</strand>
        <context>TTTTTTTGCA[A/G]AAAAGAGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTGTCGTTTTCGGCCTATTTCCACCTATTTCCGTAGATTTTTTTGCA</left_flank>
        <right_flank>AAAAGAGAGAAAAGTTGAAAAAGAAGATGTTTATTGATGTCTGGGTGCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATAAAGCCGAAAATTGCTTTTCCTGAAAAATCGATTTTTCAATTTTTTTTCCAGAATTTTTCCATATTTCCCGAACGAACAATTCTCCAGAAGTGCTCGACACGTGTCACCCATCGTCGTCAGCTTATCGGCGACTAGACCAACGAGCCGGGCATGCGCAGCTTCGTCGATGCTCGTAAAATGCAAATTGTCGACAATACGGCTTATCGAATCGCGTAAATTCTAGAAAATTCGAATTTTTCGACCCTAAAAACGGGTTTTTCGGCAAAAACTCACATGTAAAACTGCATTTTCCGGTGTCATCGTGCGCAAGTAACTTCTGAAAAAAAATCGAAAATCATTGCAAAATACAGTAGTTGCAGTTCTCGCTGCGGTACATTGCTACAAAACGCGGCATGCGCCTTTAAACGGACTACTGTAGGTGAATTTTTTGCAGATGTTTTGTTTTTTTTGTCGTTTTCGGCCTATTTCCACCTATTTCCGTAGATTTTTTTGCAAAAAAGAGAGAAAAGTTGAAAAAGAAGATGTTTATTGATGTCTGGGTGCAGTGCGGACCATTCCGAAACAAGCAAAGTGCTCAAATAGACAAAAAAGAATACAATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAAACTAAAGAAACAAGAAGATTAACATACAGAAATCTGGAAAAAAGTGAGTAAATTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAGTCGAAGTGTGTACTCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGAATGTTTTCCTCTGAACATTTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAA</canonical>
            <polymorphic>TTATAAAGCCGAAAATTGCTTTTCCTGAAAAATCGATTTTTCAATTTTTTTTCCAGAATTTTTCCATATTTCCCGAACGAACAATTCTCCAGAAGTGCTCGACACGTGTCACCCATCGTCGTCAGCTTATCGGCGACTAGACCAACGAGCCGGGCATGCGCAGCTTCGTCGATGCTCGTAAAATGCAAATTGTCGACAATACGGCTTATCGAATCGCGTAAATTCTAGAAAATTCGAATTTTTCGACCCTAAAAACGGGTTTTTCGGCAAAAACTCACATGTAAAACTGCATTTTCCGGTGTCATCGTGCGCAAGTAACTTCTGAAAAAAAATCGAAAATCATTGCAAAATACAGTAGTTGCAGTTCTCGCTGCGGTACATTGCTACAAAACGCGGCATGCGCCTTTAAACGGACTACTGTAGGTGAATTTTTTGCAGATGTTTTGTTTTTTTTGTCGTTTTCGGCCTATTTCCACCTATTTCCGTAGATTTTTTTGCARAAAAGAGAGAAAAGTTGAAAAAGAAGATGTTTATTGATGTCTGGGTGCAGTGCGGACCATTCCGAAACAAGCAAAGTGCTCAAATAGACAAAAAAGAATACAATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAAACTAAAGAAACAAGAAGATTAACATACAGAAATCTGGAAAAAAGTGAGTAAATTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAGTCGAAGTGTGTACTCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGAATGTTTTCCTCTGAACATTTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAAACGGACTACTGTAGGTGAA</pcr_primer_p1>
		<pcr_primer_p2>TAGTTTTTCATGGGGTTTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAAACGGACTACTGTAGGTGAATTTTTTGCAGATGTTTTGTTTTTTTTGTCGTTTTCGGCCTATTTCCACCTATTTCCGTAGATTTTTTTGCAAAAAAGAGAGAAAAGTTGAAAAAGAAGATGTTTATTGATGTCTGGGTGCAGTGCGGACCATTCCGAAACAAGCAAAGTGCTCAAATAGACAAAAAAGAATACAATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAAACTA</canonical_amplicon>
		<polymorphic_amplicon>TTAAACGGACTACTGTAGGTGAATTTTTTGCAGATGTTTTGTTTTTTTTGTCGTTTTCGGCCTATTTCCACCTATTTCCGTAGATTTTTTTGCARAAAAGAGAGAAAAGTTGAAAAAGAAGATGTTTATTGATGTCTGGGTGCAGTGCGGACCATTCCGAAACAAGCAAAGTGCTCAAATAGACAAAAAAGAATACAATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25395</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>69744</contig_pos>
        <strand>+</strand>
        <context>ATTCCGAAAC[A/G]AGCAAAGTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAGAAGATGTTTATTGATGTCTGGGTGCAGTGCGGACCATTCCGAAAC</left_flank>
        <right_flank>AGCAAAGTGCTCAAATAGACAAAAAAGAATACAATTTTCGAAAATCAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCCGAACGAACAATTCTCCAGAAGTGCTCGACACGTGTCACCCATCGTCGTCAGCTTATCGGCGACTAGACCAACGAGCCGGGCATGCGCAGCTTCGTCGATGCTCGTAAAATGCAAATTGTCGACAATACGGCTTATCGAATCGCGTAAATTCTAGAAAATTCGAATTTTTCGACCCTAAAAACGGGTTTTTCGGCAAAAACTCACATGTAAAACTGCATTTTCCGGTGTCATCGTGCGCAAGTAACTTCTGAAAAAAAATCGAAAATCATTGCAAAATACAGTAGTTGCAGTTCTCGCTGCGGTACATTGCTACAAAACGCGGCATGCGCCTTTAAACGGACTACTGTAGGTGAATTTTTTGCAGATGTTTTGTTTTTTTTGTCGTTTTCGGCCTATTTCCACCTATTTCCGTAGATTTTTTTGCAAAAAAGAGAGAAAAGTTGAAAAAGAAGATGTTTATTGATGTCTGGGTGCAGTGCGGACCATTCCGAAACAAGCAAAGTGCTCAAATAGACAAAAAAGAATACAATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAAACTAAAGAAACAAGAAGATTAACATACAGAAATCTGGAAAAAAGTGAGTAAATTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAGTCGAAGTGTGTACTCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGAATGTTTTCCTCTGAACATTTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAAAAAAAAAATCAATGTTCTTACTTTGCCGCTGGAATTCTGATATCCAATTTAGCCGTTGAACGTGTCGAA</canonical>
            <polymorphic>TTCCCGAACGAACAATTCTCCAGAAGTGCTCGACACGTGTCACCCATCGTCGTCAGCTTATCGGCGACTAGACCAACGAGCCGGGCATGCGCAGCTTCGTCGATGCTCGTAAAATGCAAATTGTCGACAATACGGCTTATCGAATCGCGTAAATTCTAGAAAATTCGAATTTTTCGACCCTAAAAACGGGTTTTTCGGCAAAAACTCACATGTAAAACTGCATTTTCCGGTGTCATCGTGCGCAAGTAACTTCTGAAAAAAAATCGAAAATCATTGCAAAATACAGTAGTTGCAGTTCTCGCTGCGGTACATTGCTACAAAACGCGGCATGCGCCTTTAAACGGACTACTGTAGGTGAATTTTTTGCAGATGTTTTGTTTTTTTTGTCGTTTTCGGCCTATTTCCACCTATTTCCGTAGATTTTTTTGCAAAAAAGAGAGAAAAGTTGAAAAAGAAGATGTTTATTGATGTCTGGGTGCAGTGCGGACCATTCCGAAACRAGCAAAGTGCTCAAATAGACAAAAAAGAATACAATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAAACTAAAGAAACAAGAAGATTAACATACAGAAATCTGGAAAAAAGTGAGTAAATTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAGTCGAAGTGTGTACTCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGAATGTTTTCCTCTGAACATTTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAAAAAAAAAATCAATGTTCTTACTTTGCCGCTGGAATTCTGATATCCAATTTAGCCGTTGAACGTGTCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAAAGAAGATGTTTATTGATG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCCCATTTTCTATTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGAAAAAGAAGATGTTTATTGATGTCTGGGTGCAGTGCGGACCATTCCGAAACAAGCAAAGTGCTCAAATAGACAAAAAAGAATACAATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAAACTAAAGAAACAAGAAGATTAACATACAGAAATCTGGAAAAAAGTGAGTAAATTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TGAAAAAGAAGATGTTTATTGATGTCTGGGTGCAGTGCGGACCATTCCGAAACRAGCAAAGTGCTCAAATAGACAAAAAAGAATACAATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAAACTAAAGAAACAAGAAGATTAACATACAGAAATCTGGAAAAAAGTGAGTAAATTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25396</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>69757</contig_pos>
        <strand>+</strand>
        <context>CAAAGTGCTC[A/G]AATAGACAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTGATGTCTGGGTGCAGTGCGGACCATTCCGAAACAAGCAAAGTGCTC</left_flank>
        <right_flank>AATAGACAAAAAAGAATACAATTTTCGAAAATCAAAGAAACGGAAAACAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCTCCAGAAGTGCTCGACACGTGTCACCCATCGTCGTCAGCTTATCGGCGACTAGACCAACGAGCCGGGCATGCGCAGCTTCGTCGATGCTCGTAAAATGCAAATTGTCGACAATACGGCTTATCGAATCGCGTAAATTCTAGAAAATTCGAATTTTTCGACCCTAAAAACGGGTTTTTCGGCAAAAACTCACATGTAAAACTGCATTTTCCGGTGTCATCGTGCGCAAGTAACTTCTGAAAAAAAATCGAAAATCATTGCAAAATACAGTAGTTGCAGTTCTCGCTGCGGTACATTGCTACAAAACGCGGCATGCGCCTTTAAACGGACTACTGTAGGTGAATTTTTTGCAGATGTTTTGTTTTTTTTGTCGTTTTCGGCCTATTTCCACCTATTTCCGTAGATTTTTTTGCAAAAAAGAGAGAAAAGTTGAAAAAGAAGATGTTTATTGATGTCTGGGTGCAGTGCGGACCATTCCGAAACAAGCAAAGTGCTCAAATAGACAAAAAAGAATACAATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAAACTAAAGAAACAAGAAGATTAACATACAGAAATCTGGAAAAAAGTGAGTAAATTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAGTCGAAGTGTGTACTCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGAATGTTTTCCTCTGAACATTTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAAAAAAAAAATCAATGTTCTTACTTTGCCGCTGGAATTCTGATATCCAATTTAGCCGTTGAACGTGTCGAATGCGACCCGACGA</canonical>
            <polymorphic>AATTCTCCAGAAGTGCTCGACACGTGTCACCCATCGTCGTCAGCTTATCGGCGACTAGACCAACGAGCCGGGCATGCGCAGCTTCGTCGATGCTCGTAAAATGCAAATTGTCGACAATACGGCTTATCGAATCGCGTAAATTCTAGAAAATTCGAATTTTTCGACCCTAAAAACGGGTTTTTCGGCAAAAACTCACATGTAAAACTGCATTTTCCGGTGTCATCGTGCGCAAGTAACTTCTGAAAAAAAATCGAAAATCATTGCAAAATACAGTAGTTGCAGTTCTCGCTGCGGTACATTGCTACAAAACGCGGCATGCGCCTTTAAACGGACTACTGTAGGTGAATTTTTTGCAGATGTTTTGTTTTTTTTGTCGTTTTCGGCCTATTTCCACCTATTTCCGTAGATTTTTTTGCAAAAAAGAGAGAAAAGTTGAAAAAGAAGATGTTTATTGATGTCTGGGTGCAGTGCGGACCATTCCGAAACAAGCAAAGTGCTCRAATAGACAAAAAAGAATACAATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAAACTAAAGAAACAAGAAGATTAACATACAGAAATCTGGAAAAAAGTGAGTAAATTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAGTCGAAGTGTGTACTCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGAATGTTTTCCTCTGAACATTTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAAAAAAAAAATCAATGTTCTTACTTTGCCGCTGGAATTCTGATATCCAATTTAGCCGTTGAACGTGTCGAATGCGACCCGACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAAAGAAGATGTTTATTGATG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCCCATTTTCTATTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGAAAAAGAAGATGTTTATTGATGTCTGGGTGCAGTGCGGACCATTCCGAAACAAGCAAAGTGCTCAAATAGACAAAAAAGAATACAATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAAACTAAAGAAACAAGAAGATTAACATACAGAAATCTGGAAAAAAGTGAGTAAATTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TGAAAAAGAAGATGTTTATTGATGTCTGGGTGCAGTGCGGACCATTCCGAAACAAGCAAAGTGCTCRAATAGACAAAAAAGAATACAATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAAACTAAAGAAACAAGAAGATTAACATACAGAAATCTGGAAAAAAGTGAGTAAATTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25397</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>69776</contig_pos>
        <strand>+</strand>
        <context>AAAAAGAATA[A/C]AATTTTCGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCGGACCATTCCGAAACAAGCAAAGTGCTCAAATAGACAAAAAAGAATA</left_flank>
        <right_flank>AATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACGTGTCACCCATCGTCGTCAGCTTATCGGCGACTAGACCAACGAGCCGGGCATGCGCAGCTTCGTCGATGCTCGTAAAATGCAAATTGTCGACAATACGGCTTATCGAATCGCGTAAATTCTAGAAAATTCGAATTTTTCGACCCTAAAAACGGGTTTTTCGGCAAAAACTCACATGTAAAACTGCATTTTCCGGTGTCATCGTGCGCAAGTAACTTCTGAAAAAAAATCGAAAATCATTGCAAAATACAGTAGTTGCAGTTCTCGCTGCGGTACATTGCTACAAAACGCGGCATGCGCCTTTAAACGGACTACTGTAGGTGAATTTTTTGCAGATGTTTTGTTTTTTTTGTCGTTTTCGGCCTATTTCCACCTATTTCCGTAGATTTTTTTGCAAAAAAGAGAGAAAAGTTGAAAAAGAAGATGTTTATTGATGTCTGGGTGCAGTGCGGACCATTCCGAAACAAGCAAAGTGCTCAAATAGACAAAAAAGAATACAATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAAACTAAAGAAACAAGAAGATTAACATACAGAAATCTGGAAAAAAGTGAGTAAATTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAGTCGAAGTGTGTACTCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGAATGTTTTCCTCTGAACATTTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAAAAAAAAAATCAATGTTCTTACTTTGCCGCTGGAATTCTGATATCCAATTTAGCCGTTGAACGTGTCGAATGCGACCCGACGACGGTAGTGGTATTCAGAAT</canonical>
            <polymorphic>ACACGTGTCACCCATCGTCGTCAGCTTATCGGCGACTAGACCAACGAGCCGGGCATGCGCAGCTTCGTCGATGCTCGTAAAATGCAAATTGTCGACAATACGGCTTATCGAATCGCGTAAATTCTAGAAAATTCGAATTTTTCGACCCTAAAAACGGGTTTTTCGGCAAAAACTCACATGTAAAACTGCATTTTCCGGTGTCATCGTGCGCAAGTAACTTCTGAAAAAAAATCGAAAATCATTGCAAAATACAGTAGTTGCAGTTCTCGCTGCGGTACATTGCTACAAAACGCGGCATGCGCCTTTAAACGGACTACTGTAGGTGAATTTTTTGCAGATGTTTTGTTTTTTTTGTCGTTTTCGGCCTATTTCCACCTATTTCCGTAGATTTTTTTGCAAAAAAGAGAGAAAAGTTGAAAAAGAAGATGTTTATTGATGTCTGGGTGCAGTGCGGACCATTCCGAAACAAGCAAAGTGCTCAAATAGACAAAAAAGAATAMAATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAAACTAAAGAAACAAGAAGATTAACATACAGAAATCTGGAAAAAAGTGAGTAAATTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAGTCGAAGTGTGTACTCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGAATGTTTTCCTCTGAACATTTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAAAAAAAAAATCAATGTTCTTACTTTGCCGCTGGAATTCTGATATCCAATTTAGCCGTTGAACGTGTCGAATGCGACCCGACGACGGTAGTGGTATTCAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAAAGAAGATGTTTATTGATG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCCCATTTTCTATTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGAAAAAGAAGATGTTTATTGATGTCTGGGTGCAGTGCGGACCATTCCGAAACAAGCAAAGTGCTCAAATAGACAAAAAAGAATACAATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAAACTAAAGAAACAAGAAGATTAACATACAGAAATCTGGAAAAAAGTGAGTAAATTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TGAAAAAGAAGATGTTTATTGATGTCTGGGTGCAGTGCGGACCATTCCGAAACAAGCAAAGTGCTCAAATAGACAAAAAAGAATAMAATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAAACTAAAGAAACAAGAAGATTAACATACAGAAATCTGGAAAAAAGTGAGTAAATTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25398</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>69948</contig_pos>
        <strand>+</strand>
        <context>TATTCTAAAG[A/G]CTACAAGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAG</left_flank>
        <right_flank>CTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCACATGTAAAACTGCATTTTCCGGTGTCATCGTGCGCAAGTAACTTCTGAAAAAAAATCGAAAATCATTGCAAAATACAGTAGTTGCAGTTCTCGCTGCGGTACATTGCTACAAAACGCGGCATGCGCCTTTAAACGGACTACTGTAGGTGAATTTTTTGCAGATGTTTTGTTTTTTTTGTCGTTTTCGGCCTATTTCCACCTATTTCCGTAGATTTTTTTGCAAAAAAGAGAGAAAAGTTGAAAAAGAAGATGTTTATTGATGTCTGGGTGCAGTGCGGACCATTCCGAAACAAGCAAAGTGCTCAAATAGACAAAAAAGAATACAATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAAACTAAAGAAACAAGAAGATTAACATACAGAAATCTGGAAAAAAGTGAGTAAATTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAGTCGAAGTGTGTACTCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGAATGTTTTCCTCTGAACATTTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAAAAAAAAAATCAATGTTCTTACTTTGCCGCTGGAATTCTGATATCCAATTTAGCCGTTGAACGTGTCGAATGCGACCCGACGACGGTAGTGGTATTCAGAATTTGATCGTTGAATTCACGGCCGACAATGATAATCCATCCGGCTTGTTTGGGTTTTGGCCATTGTGGGAGGTGCATTTGAGAGTTGTTCTGTAAGATTTCGGCATTTTTGGGATTATGAATTCTAGAATTGCGGAATTTTTGGTACCCAAATTTTTGAATTTGGAGCCGTTTT</canonical>
            <polymorphic>CTCACATGTAAAACTGCATTTTCCGGTGTCATCGTGCGCAAGTAACTTCTGAAAAAAAATCGAAAATCATTGCAAAATACAGTAGTTGCAGTTCTCGCTGCGGTACATTGCTACAAAACGCGGCATGCGCCTTTAAACGGACTACTGTAGGTGAATTTTTTGCAGATGTTTTGTTTTTTTTGTCGTTTTCGGCCTATTTCCACCTATTTCCGTAGATTTTTTTGCAAAAAAGAGAGAAAAGTTGAAAAAGAAGATGTTTATTGATGTCTGGGTGCAGTGCGGACCATTCCGAAACAAGCAAAGTGCTCAAATAGACAAAAAAGAATACAATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAAACTAAAGAAACAAGAAGATTAACATACAGAAATCTGGAAAAAAGTGAGTAAATTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGRCTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAGTCGAAGTGTGTACTCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGAATGTTTTCCTCTGAACATTTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAAAAAAAAAATCAATGTTCTTACTTTGCCGCTGGAATTCTGATATCCAATTTAGCCGTTGAACGTGTCGAATGCGACCCGACGACGGTAGTGGTATTCAGAATTTGATCGTTGAATTCACGGCCGACAATGATAATCCATCCGGCTTGTTTGGGTTTTGGCCATTGTGGGAGGTGCATTTGAGAGTTGTTCTGTAAGATTTCGGCATTTTTGGGATTATGAATTCTAGAATTGCGGAATTTTTGGTACCCAAATTTTTGAATTTGGAGCCGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATGAAAAACTAAAGAAACAAG</pcr_primer_p1>
		<pcr_primer_p2>TACACACTTCGACTGGATGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCATGAAAAACTAAAGAAACAAGAAGATTAACATACAGAAATCTGGAAAAAAGTGAGTAAATTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAGTCGAAGTGTGTA</canonical_amplicon>
		<polymorphic_amplicon>CCATGAAAAACTAAAGAAACAAGAAGATTAACATACAGAAATCTGGAAAAAAGTGAGTAAATTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGRCTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAGTCGAAGTGTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25399</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>69968</contig_pos>
        <strand>+</strand>
        <context>AGATATGAAA[A/G]AGCGATGAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAA</left_flank>
        <right_flank>AGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCGGTGTCATCGTGCGCAAGTAACTTCTGAAAAAAAATCGAAAATCATTGCAAAATACAGTAGTTGCAGTTCTCGCTGCGGTACATTGCTACAAAACGCGGCATGCGCCTTTAAACGGACTACTGTAGGTGAATTTTTTGCAGATGTTTTGTTTTTTTTGTCGTTTTCGGCCTATTTCCACCTATTTCCGTAGATTTTTTTGCAAAAAAGAGAGAAAAGTTGAAAAAGAAGATGTTTATTGATGTCTGGGTGCAGTGCGGACCATTCCGAAACAAGCAAAGTGCTCAAATAGACAAAAAAGAATACAATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAAACTAAAGAAACAAGAAGATTAACATACAGAAATCTGGAAAAAAGTGAGTAAATTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAGTCGAAGTGTGTACTCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGAATGTTTTCCTCTGAACATTTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAAAAAAAAAATCAATGTTCTTACTTTGCCGCTGGAATTCTGATATCCAATTTAGCCGTTGAACGTGTCGAATGCGACCCGACGACGGTAGTGGTATTCAGAATTTGATCGTTGAATTCACGGCCGACAATGATAATCCATCCGGCTTGTTTGGGTTTTGGCCATTGTGGGAGGTGCATTTGAGAGTTGTTCTGTAAGATTTCGGCATTTTTGGGATTATGAATTCTAGAATTGCGGAATTTTTGGTACCCAAATTTTTGAATTTGGAGCCGTTTTTAGATGCTCAAAGCATTGTT</canonical>
            <polymorphic>TTCCGGTGTCATCGTGCGCAAGTAACTTCTGAAAAAAAATCGAAAATCATTGCAAAATACAGTAGTTGCAGTTCTCGCTGCGGTACATTGCTACAAAACGCGGCATGCGCCTTTAAACGGACTACTGTAGGTGAATTTTTTGCAGATGTTTTGTTTTTTTTGTCGTTTTCGGCCTATTTCCACCTATTTCCGTAGATTTTTTTGCAAAAAAGAGAGAAAAGTTGAAAAAGAAGATGTTTATTGATGTCTGGGTGCAGTGCGGACCATTCCGAAACAAGCAAAGTGCTCAAATAGACAAAAAAGAATACAATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAAACTAAAGAAACAAGAAGATTAACATACAGAAATCTGGAAAAAAGTGAGTAAATTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAARAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAGTCGAAGTGTGTACTCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGAATGTTTTCCTCTGAACATTTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAAAAAAAAAATCAATGTTCTTACTTTGCCGCTGGAATTCTGATATCCAATTTAGCCGTTGAACGTGTCGAATGCGACCCGACGACGGTAGTGGTATTCAGAATTTGATCGTTGAATTCACGGCCGACAATGATAATCCATCCGGCTTGTTTGGGTTTTGGCCATTGTGGGAGGTGCATTTGAGAGTTGTTCTGTAAGATTTCGGCATTTTTGGGATTATGAATTCTAGAATTGCGGAATTTTTGGTACCCAAATTTTTGAATTTGGAGCCGTTTTTAGATGCTCAAAGCATTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACAATAGAAAATGGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTAAATTTGCGTATTTCAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAGTCGAAGTGTGTACTCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGAATGTTTTCCTCTGAACATTTTTATCATTGAAATACGCAAATTTAA</canonical_amplicon>
		<polymorphic_amplicon>AAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAARAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAGTCGAAGTGTGTACTCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGAATGTTTTCCTCTGAACATTTTTATCATTGAAATACGCAAATTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25400</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>70119</contig_pos>
        <strand>+</strand>
        <context>CGGAAAGCGA[A/G]TGTTTTCCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGA</left_flank>
        <right_flank>TGTTTTCCTCTGAACATTTTTATCATTGAAATACGCAAATTTAAGCTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTTTTTTTGTCGTTTTCGGCCTATTTCCACCTATTTCCGTAGATTTTTTTGCAAAAAAGAGAGAAAAGTTGAAAAAGAAGATGTTTATTGATGTCTGGGTGCAGTGCGGACCATTCCGAAACAAGCAAAGTGCTCAAATAGACAAAAAAGAATACAATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAAACTAAAGAAACAAGAAGATTAACATACAGAAATCTGGAAAAAAGTGAGTAAATTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAGTCGAAGTGTGTACTCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGAATGTTTTCCTCTGAACATTTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAAAAAAAAAATCAATGTTCTTACTTTGCCGCTGGAATTCTGATATCCAATTTAGCCGTTGAACGTGTCGAATGCGACCCGACGACGGTAGTGGTATTCAGAATTTGATCGTTGAATTCACGGCCGACAATGATAATCCATCCGGCTTGTTTGGGTTTTGGCCATTGTGGGAGGTGCATTTGAGAGTTGTTCTGTAAGATTTCGGCATTTTTGGGATTATGAATTCTAGAATTGCGGAATTTTTGGTACCCAAATTTTTGAATTTGGAGCCGTTTTTAGATGCTCAAAGCATTGTTGCAAACAGGCCGGCCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAACAAGATATTTTGACGGATTTGATATATGATAGATCTCGACGAGGTCCATCTTACCTATACCAGGATGTTCGACTTGTTATATACTAACATGCCGCCC</canonical>
            <polymorphic>TGTTTTTTTTGTCGTTTTCGGCCTATTTCCACCTATTTCCGTAGATTTTTTTGCAAAAAAGAGAGAAAAGTTGAAAAAGAAGATGTTTATTGATGTCTGGGTGCAGTGCGGACCATTCCGAAACAAGCAAAGTGCTCAAATAGACAAAAAAGAATACAATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAAACTAAAGAAACAAGAAGATTAACATACAGAAATCTGGAAAAAAGTGAGTAAATTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAGTCGAAGTGTGTACTCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGARTGTTTTCCTCTGAACATTTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAAAAAAAAAATCAATGTTCTTACTTTGCCGCTGGAATTCTGATATCCAATTTAGCCGTTGAACGTGTCGAATGCGACCCGACGACGGTAGTGGTATTCAGAATTTGATCGTTGAATTCACGGCCGACAATGATAATCCATCCGGCTTGTTTGGGTTTTGGCCATTGTGGGAGGTGCATTTGAGAGTTGTTCTGTAAGATTTCGGCATTTTTGGGATTATGAATTCTAGAATTGCGGAATTTTTGGTACCCAAATTTTTGAATTTGGAGCCGTTTTTAGATGCTCAAAGCATTGTTGCAAACAGGCCGGCCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAACAAGATATTTTGACGGATTTGATATATGATAGATCTCGACGAGGTCCATCTTACCTATACCAGGATGTTCGACTTGTTATATACTAACATGCCGCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAATATTTAAGAAACATCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>CGATCAAATTCTGAATACCACTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAATATTTAAGAAACATCCAGTCGAAGTGTGTACTCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGAATGTTTTCCTCTGAACATTTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAAAAAAAAAATCAATGTTCTTACTTTGCCGCTGGAATTCTGATATCCAATTTAGCCGTTGAACGTGTCGAATGCGACCCGACGACGGTAGTGGTATTCAGAATTTGATCG</canonical_amplicon>
		<polymorphic_amplicon>TCAATATTTAAGAAACATCCAGTCGAAGTGTGTACTCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGARTGTTTTCCTCTGAACATTTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAAAAAAAAAATCAATGTTCTTACTTTGCCGCTGGAATTCTGATATCCAATTTAGCCGTTGAACGTGTCGAATGCGACCCGACGACGGTAGTGGTATTCAGAATTTGATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25401</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>70134</contig_pos>
        <strand>+</strand>
        <context>TTCCTCTGAA[A/C]ATTTTTATCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGATAGCAATCGCTGAGAATGTAAACGGAAAGCGAATGTTTTCCTCTGAA</left_flank>
        <right_flank>ATTTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAAAAAAAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGGCCTATTTCCACCTATTTCCGTAGATTTTTTTGCAAAAAAGAGAGAAAAGTTGAAAAAGAAGATGTTTATTGATGTCTGGGTGCAGTGCGGACCATTCCGAAACAAGCAAAGTGCTCAAATAGACAAAAAAGAATACAATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAAACTAAAGAAACAAGAAGATTAACATACAGAAATCTGGAAAAAAGTGAGTAAATTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAGTCGAAGTGTGTACTCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGAATGTTTTCCTCTGAACATTTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAAAAAAAAAATCAATGTTCTTACTTTGCCGCTGGAATTCTGATATCCAATTTAGCCGTTGAACGTGTCGAATGCGACCCGACGACGGTAGTGGTATTCAGAATTTGATCGTTGAATTCACGGCCGACAATGATAATCCATCCGGCTTGTTTGGGTTTTGGCCATTGTGGGAGGTGCATTTGAGAGTTGTTCTGTAAGATTTCGGCATTTTTGGGATTATGAATTCTAGAATTGCGGAATTTTTGGTACCCAAATTTTTGAATTTGGAGCCGTTTTTAGATGCTCAAAGCATTGTTGCAAACAGGCCGGCCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAACAAGATATTTTGACGGATTTGATATATGATAGATCTCGACGAGGTCCATCTTACCTATACCAGGATGTTCGACTTGTTATATACTAACATGCCGCCCACCATGTTAAATTAG</canonical>
            <polymorphic>TTTCGGCCTATTTCCACCTATTTCCGTAGATTTTTTTGCAAAAAAGAGAGAAAAGTTGAAAAAGAAGATGTTTATTGATGTCTGGGTGCAGTGCGGACCATTCCGAAACAAGCAAAGTGCTCAAATAGACAAAAAAGAATACAATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAAACTAAAGAAACAAGAAGATTAACATACAGAAATCTGGAAAAAAGTGAGTAAATTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAGTCGAAGTGTGTACTCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGAATGTTTTCCTCTGAAMATTTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAAAAAAAAAATCAATGTTCTTACTTTGCCGCTGGAATTCTGATATCCAATTTAGCCGTTGAACGTGTCGAATGCGACCCGACGACGGTAGTGGTATTCAGAATTTGATCGTTGAATTCACGGCCGACAATGATAATCCATCCGGCTTGTTTGGGTTTTGGCCATTGTGGGAGGTGCATTTGAGAGTTGTTCTGTAAGATTTCGGCATTTTTGGGATTATGAATTCTAGAATTGCGGAATTTTTGGTACCCAAATTTTTGAATTTGGAGCCGTTTTTAGATGCTCAAAGCATTGTTGCAAACAGGCCGGCCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAACAAGATATTTTGACGGATTTGATATATGATAGATCTCGACGAGGTCCATCTTACCTATACCAGGATGTTCGACTTGTTATATACTAACATGCCGCCCACCATGTTAAATTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAATATTTAAGAAACATCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>CGATCAAATTCTGAATACCACTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAATATTTAAGAAACATCCAGTCGAAGTGTGTACTCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGAATGTTTTCCTCTGAACATTTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAAAAAAAAAATCAATGTTCTTACTTTGCCGCTGGAATTCTGATATCCAATTTAGCCGTTGAACGTGTCGAATGCGACCCGACGACGGTAGTGGTATTCAGAATTTGATCG</canonical_amplicon>
		<polymorphic_amplicon>TCAATATTTAAGAAACATCCAGTCGAAGTGTGTACTCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGAATGTTTTCCTCTGAAMATTTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAAAAAAAAAATCAATGTTCTTACTTTGCCGCTGGAATTCTGATATCCAATTTAGCCGTTGAACGTGTCGAATGCGACCCGACGACGGTAGTGGTATTCAGAATTTGATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25402</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>70235</contig_pos>
        <strand>+</strand>
        <context>TAGCCGTTGA[A/G]CGTGTCGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATGTTCTTACTTTGCCGCTGGAATTCTGATATCCAATTTAGCCGTTGA</left_flank>
        <right_flank>CGTGTCGAATGCGACCCGACGACGGTAGTGGTATTCAGAATTTGATCGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCGAAACAAGCAAAGTGCTCAAATAGACAAAAAAGAATACAATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAAACTAAAGAAACAAGAAGATTAACATACAGAAATCTGGAAAAAAGTGAGTAAATTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAGTCGAAGTGTGTACTCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGAATGTTTTCCTCTGAACATTTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAAAAAAAAAATCAATGTTCTTACTTTGCCGCTGGAATTCTGATATCCAATTTAGCCGTTGAACGTGTCGAATGCGACCCGACGACGGTAGTGGTATTCAGAATTTGATCGTTGAATTCACGGCCGACAATGATAATCCATCCGGCTTGTTTGGGTTTTGGCCATTGTGGGAGGTGCATTTGAGAGTTGTTCTGTAAGATTTCGGCATTTTTGGGATTATGAATTCTAGAATTGCGGAATTTTTGGTACCCAAATTTTTGAATTTGGAGCCGTTTTTAGATGCTCAAAGCATTGTTGCAAACAGGCCGGCCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAACAAGATATTTTGACGGATTTGATATATGATAGATCTCGACGAGGTCCATCTTACCTATACCAGGATGTTCGACTTGTTATATACTAACATGCCGCCCACCATGTTAAATTAGCTTAGAAAACACACCAATTGGAAATCAGACAATTTCTAGGTCATAGAAGTTGGTGGACTAGAAAACTCGACTTACAAAAGTTAAGCCATCCCGACACAAAA</canonical>
            <polymorphic>TCCGAAACAAGCAAAGTGCTCAAATAGACAAAAAAGAATACAATTTTCGAAAATCAAAGAAACGGAAAACACCTAGAAAACCCCATGAAAAACTAAAGAAACAAGAAGATTAACATACAGAAATCTGGAAAAAAGTGAGTAAATTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAGTCGAAGTGTGTACTCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGAATGTTTTCCTCTGAACATTTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAAAAAAAAAATCAATGTTCTTACTTTGCCGCTGGAATTCTGATATCCAATTTAGCCGTTGARCGTGTCGAATGCGACCCGACGACGGTAGTGGTATTCAGAATTTGATCGTTGAATTCACGGCCGACAATGATAATCCATCCGGCTTGTTTGGGTTTTGGCCATTGTGGGAGGTGCATTTGAGAGTTGTTCTGTAAGATTTCGGCATTTTTGGGATTATGAATTCTAGAATTGCGGAATTTTTGGTACCCAAATTTTTGAATTTGGAGCCGTTTTTAGATGCTCAAAGCATTGTTGCAAACAGGCCGGCCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAACAAGATATTTTGACGGATTTGATATATGATAGATCTCGACGAGGTCCATCTTACCTATACCAGGATGTTCGACTTGTTATATACTAACATGCCGCCCACCATGTTAAATTAGCTTAGAAAACACACCAATTGGAAATCAGACAATTTCTAGGTCATAGAAGTTGGTGGACTAGAAAACTCGACTTACAAAAGTTAAGCCATCCCGACACAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTATCATTGAAATACGCAAAT</pcr_primer_p1>
		<pcr_primer_p2>CGAAATCTTACAGAACAACTCTC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAAAAAAAAAATCAATGTTCTTACTTTGCCGCTGGAATTCTGATATCCAATTTAGCCGTTGAACGTGTCGAATGCGACCCGACGACGGTAGTGGTATTCAGAATTTGATCGTTGAATTCACGGCCGACAATGATAATCCATCCGGCTTGTTTGGGTTTTGGCCATTGTGGGAGGTGCATTTGAGAGTTGTTCTGTAAGATTTCG</canonical_amplicon>
		<polymorphic_amplicon>TTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAAAAAAAAAATCAATGTTCTTACTTTGCCGCTGGAATTCTGATATCCAATTTAGCCGTTGARCGTGTCGAATGCGACCCGACGACGGTAGTGGTATTCAGAATTTGATCGTTGAATTCACGGCCGACAATGATAATCCATCCGGCTTGTTTGGGTTTTGGCCATTGTGGGAGGTGCATTTGAGAGTTGTTCTGTAAGATTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25403</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>70378</contig_pos>
        <strand>+</strand>
        <context>AAGATTTCGG[C/G]ATTTTTSGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTGGCCATTGTGGGAGGTGCATTTGAGAGTTGTTCTGTAAGATTTCGG</left_flank>
        <right_flank>ATTTTTGGGATTATGAATTCTAGAATTGCGGAATTTTTGGTACCCAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAGTCGAAGTGTGTACTCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGAATGTTTTCCTCTGAACATTTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAAAAAAAAAATCAATGTTCTTACTTTGCCGCTGGAATTCTGATATCCAATTTAGCCGTTGAACGTGTCGAATGCGACCCGACGACGGTAGTGGTATTCAGAATTTGATCGTTGAATTCACGGCCGACAATGATAATCCATCCGGCTTGTTTGGGTTTTGGCCATTGTGGGAGGTGCATTTGAGAGTTGTTCTGTAAGATTTCGGCATTTTTGGGATTATGAATTCTAGAATTGCGGAATTTTTGGTACCCAAATTTTTGAATTTGGAGCCGTTTTTAGATGCTCAAAGCATTGTTGCAAACAGGCCGGCCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAACAAGATATTTTGACGGATTTGATATATGATAGATCTCGACGAGGTCCATCTTACCTATACCAGGATGTTCGACTTGTTATATACTAACATGCCGCCCACCATGTTAAATTAGCTTAGAAAACACACCAATTGGAAATCAGACAATTTCTAGGTCATAGAAGTTGGTGGACTAGAAAACTCGACTTACAAAAGTTAAGCCATCCCGACACAAAAGACTTATCAGTGTGTAAGAGGAGGGGCGTGATGATGAGATTAGGTACGTGGACTGTCCAGAAGTCATTTGAAACTGTTATAGTCCATAATAATACTTGCATTATCATATTGAATGAATGCTTATTTCCCGATGGATAATTTGA</canonical>
            <polymorphic>TTTTAACACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAGTCGAAGTGTGTACTCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGAATGTTTTCCTCTGAACATTTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAAAAAAAAAATCAATGTTCTTACTTTGCCGCTGGAATTCTGATATCCAATTTAGCCGTTGAACGTGTCGAATGCGACCCGACGACGGTAGTGGTATTCAGAATTTGATCGTTGAATTCACGGCCGACAATGATAATCCATCCGGCTTGTTTGGGTTTTGGCCATTGTGGGAGGTGCATTTGAGAGTTGTTCTGTAAGATTTCGGSATTTTTGGGATTATGAATTCTAGAATTGCGGAATTTTTGGTACCCAAATTTTTGAATTTGGAGCCGTTTTTAGATGCTCAAAGCATTGTTGCAAACAGGCCGGCCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAACAAGATATTTTGACGGATTTGATATATGATAGATCTCGACGAGGTCCATCTTACCTATACCAGGATGTTCGACTTGTTATATACTAACATGCCGCCCACCATGTTAAATTAGCTTAGAAAACACACCAATTGGAAATCAGACAATTTCTAGGTCATAGAAGTTGGTGGACTAGAAAACTCGACTTACAAAAGTTAAGCCATCCCGACACAAAAGACTTATCAGTGTGTAAGAGGAGGGGCGTGATGATGAGATTAGGTACGTGGACTGTCCAGAAGTCATTTGAAACTGTTATAGTCCATAATAATACTTGCATTATCATATTGAATGAATGCTTATTTCCCGATGGATAATTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTCAGAATTTGATCGTTGAAT</pcr_primer_p1>
		<pcr_primer_p2>TTCTGAAGCCGAGTTATCTG</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TATTCAGAATTTGATCGTTGAATTCACGGCCGACAATGATAATCCATCCGGCTTGTTTGGGTTTTGGCCATTGTGGGAGGTGCATTTGAGAGTTGTTCTGTAAGATTTCGGCATTTTTGGGATTATGAATTCTAGAATTGCGGAATTTTTGGTACCCAAATTTTTGAATTTGGAGCCGTTTTTAGATGCTCAAAGCATTGTTGCAAACAGGCCGGCCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAA</canonical_amplicon>
		<polymorphic_amplicon>TATTCAGAATTTGATCGTTGAATTCACGGCCGACAATGATAATCCATCCGGCTTGTTTGGGTTTTGGCCATTGTGGGAGGTGCATTTGAGAGTTGTTCTGTAAGATTTCGGSATTTTTGGGATTATGAATTCTAGAATTGCGGAATTTTTGGTACCCAAATTTTTGAATTTGGAGCCGTTTTTAGATGCTCAAAGCATTGTTGCAAACAGGCCGGCCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25404</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>70385</contig_pos>
        <strand>+</strand>
        <context>CGGSATTTTT[C/G]GGATTMTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CATTGTGGGAGGTGCATTTGAGAGTTGTTCTGTAAGATTTCGGCATTTTT</left_flank>
        <right_flank>GGATTATGAATTCTAGAATTGCGGAATTTTTGGTACCCAAATTTTTGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAGTCGAAGTGTGTACTCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGAATGTTTTCCTCTGAACATTTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAAAAAAAAAATCAATGTTCTTACTTTGCCGCTGGAATTCTGATATCCAATTTAGCCGTTGAACGTGTCGAATGCGACCCGACGACGGTAGTGGTATTCAGAATTTGATCGTTGAATTCACGGCCGACAATGATAATCCATCCGGCTTGTTTGGGTTTTGGCCATTGTGGGAGGTGCATTTGAGAGTTGTTCTGTAAGATTTCGGCATTTTTGGGATTATGAATTCTAGAATTGCGGAATTTTTGGTACCCAAATTTTTGAATTTGGAGCCGTTTTTAGATGCTCAAAGCATTGTTGCAAACAGGCCGGCCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAACAAGATATTTTGACGGATTTGATATATGATAGATCTCGACGAGGTCCATCTTACCTATACCAGGATGTTCGACTTGTTATATACTAACATGCCGCCCACCATGTTAAATTAGCTTAGAAAACACACCAATTGGAAATCAGACAATTTCTAGGTCATAGAAGTTGGTGGACTAGAAAACTCGACTTACAAAAGTTAAGCCATCCCGACACAAAAGACTTATCAGTGTGTAAGAGGAGGGGCGTGATGATGAGATTAGGTACGTGGACTGTCCAGAAGTCATTTGAAACTGTTATAGTCCATAATAATACTTGCATTATCATATTGAATGAATGCTTATTTCCCGATGGATAATTTGAACTAACT</canonical>
            <polymorphic>ACAGCTTTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAGTCGAAGTGTGTACTCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGAATGTTTTCCTCTGAACATTTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAAAAAAAAAATCAATGTTCTTACTTTGCCGCTGGAATTCTGATATCCAATTTAGCCGTTGAACGTGTCGAATGCGACCCGACGACGGTAGTGGTATTCAGAATTTGATCGTTGAATTCACGGCCGACAATGATAATCCATCCGGCTTGTTTGGGTTTTGGCCATTGTGGGAGGTGCATTTGAGAGTTGTTCTGTAAGATTTCGGCATTTTTSGGATTATGAATTCTAGAATTGCGGAATTTTTGGTACCCAAATTTTTGAATTTGGAGCCGTTTTTAGATGCTCAAAGCATTGTTGCAAACAGGCCGGCCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAACAAGATATTTTGACGGATTTGATATATGATAGATCTCGACGAGGTCCATCTTACCTATACCAGGATGTTCGACTTGTTATATACTAACATGCCGCCCACCATGTTAAATTAGCTTAGAAAACACACCAATTGGAAATCAGACAATTTCTAGGTCATAGAAGTTGGTGGACTAGAAAACTCGACTTACAAAAGTTAAGCCATCCCGACACAAAAGACTTATCAGTGTGTAAGAGGAGGGGCGTGATGATGAGATTAGGTACGTGGACTGTCCAGAAGTCATTTGAAACTGTTATAGTCCATAATAATACTTGCATTATCATATTGAATGAATGCTTATTTCCCGATGGATAATTTGAACTAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTCAGAATTTGATCGTTGAAT</pcr_primer_p1>
		<pcr_primer_p2>TTCTGAAGCCGAGTTATCTG</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TATTCAGAATTTGATCGTTGAATTCACGGCCGACAATGATAATCCATCCGGCTTGTTTGGGTTTTGGCCATTGTGGGAGGTGCATTTGAGAGTTGTTCTGTAAGATTTCGGCATTTTTGGGATTATGAATTCTAGAATTGCGGAATTTTTGGTACCCAAATTTTTGAATTTGGAGCCGTTTTTAGATGCTCAAAGCATTGTTGCAAACAGGCCGGCCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAA</canonical_amplicon>
		<polymorphic_amplicon>TATTCAGAATTTGATCGTTGAATTCACGGCCGACAATGATAATCCATCCGGCTTGTTTGGGTTTTGGCCATTGTGGGAGGTGCATTTGAGAGTTGTTCTGTAAGATTTCGGCATTTTTSGGATTATGAATTCTAGAATTGCGGAATTTTTGGTACCCAAATTTTTGAATTTGGAGCCGTTTTTAGATGCTCAAAGCATTGTTGCAAACAGGCCGGCCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25405</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>70391</contig_pos>
        <strand>+</strand>
        <context>TTTTSGGATT[A/C]TGAATTCTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGGAGGTGCATTTGAGAGTTGTTCTGTAAGATTTCGGCATTTTTGGGATT</left_flank>
        <right_flank>TGAATTCTAGAATTGCGGAATTTTTGGTACCCAAATTTTTGAATTTGGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAGTCGAAGTGTGTACTCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGAATGTTTTCCTCTGAACATTTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAAAAAAAAAATCAATGTTCTTACTTTGCCGCTGGAATTCTGATATCCAATTTAGCCGTTGAACGTGTCGAATGCGACCCGACGACGGTAGTGGTATTCAGAATTTGATCGTTGAATTCACGGCCGACAATGATAATCCATCCGGCTTGTTTGGGTTTTGGCCATTGTGGGAGGTGCATTTGAGAGTTGTTCTGTAAGATTTCGGCATTTTTGGGATTATGAATTCTAGAATTGCGGAATTTTTGGTACCCAAATTTTTGAATTTGGAGCCGTTTTTAGATGCTCAAAGCATTGTTGCAAACAGGCCGGCCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAACAAGATATTTTGACGGATTTGATATATGATAGATCTCGACGAGGTCCATCTTACCTATACCAGGATGTTCGACTTGTTATATACTAACATGCCGCCCACCATGTTAAATTAGCTTAGAAAACACACCAATTGGAAATCAGACAATTTCTAGGTCATAGAAGTTGGTGGACTAGAAAACTCGACTTACAAAAGTTAAGCCATCCCGACACAAAAGACTTATCAGTGTGTAAGAGGAGGGGCGTGATGATGAGATTAGGTACGTGGACTGTCCAGAAGTCATTTGAAACTGTTATAGTCCATAATAATACTTGCATTATCATATTGAATGAATGCTTATTTCCCGATGGATAATTTGAACTAACTAAGGAC</canonical>
            <polymorphic>TTTTGGGAGGCACTGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAGTCGAAGTGTGTACTCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGAATGTTTTCCTCTGAACATTTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAAAAAAAAAATCAATGTTCTTACTTTGCCGCTGGAATTCTGATATCCAATTTAGCCGTTGAACGTGTCGAATGCGACCCGACGACGGTAGTGGTATTCAGAATTTGATCGTTGAATTCACGGCCGACAATGATAATCCATCCGGCTTGTTTGGGTTTTGGCCATTGTGGGAGGTGCATTTGAGAGTTGTTCTGTAAGATTTCGGCATTTTTGGGATTMTGAATTCTAGAATTGCGGAATTTTTGGTACCCAAATTTTTGAATTTGGAGCCGTTTTTAGATGCTCAAAGCATTGTTGCAAACAGGCCGGCCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAACAAGATATTTTGACGGATTTGATATATGATAGATCTCGACGAGGTCCATCTTACCTATACCAGGATGTTCGACTTGTTATATACTAACATGCCGCCCACCATGTTAAATTAGCTTAGAAAACACACCAATTGGAAATCAGACAATTTCTAGGTCATAGAAGTTGGTGGACTAGAAAACTCGACTTACAAAAGTTAAGCCATCCCGACACAAAAGACTTATCAGTGTGTAAGAGGAGGGGCGTGATGATGAGATTAGGTACGTGGACTGTCCAGAAGTCATTTGAAACTGTTATAGTCCATAATAATACTTGCATTATCATATTGAATGAATGCTTATTTCCCGATGGATAATTTGAACTAACTAAGGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTCAGAATTTGATCGTTGAAT</pcr_primer_p1>
		<pcr_primer_p2>TTCTGAAGCCGAGTTATCTG</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TATTCAGAATTTGATCGTTGAATTCACGGCCGACAATGATAATCCATCCGGCTTGTTTGGGTTTTGGCCATTGTGGGAGGTGCATTTGAGAGTTGTTCTGTAAGATTTCGGCATTTTTGGGATTATGAATTCTAGAATTGCGGAATTTTTGGTACCCAAATTTTTGAATTTGGAGCCGTTTTTAGATGCTCAAAGCATTGTTGCAAACAGGCCGGCCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAA</canonical_amplicon>
		<polymorphic_amplicon>TATTCAGAATTTGATCGTTGAATTCACGGCCGACAATGATAATCCATCCGGCTTGTTTGGGTTTTGGCCATTGTGGGAGGTGCATTTGAGAGTTGTTCTGTAAGATTTCGGCATTTTTGGGATTMTGAATTCTAGAATTGCGGAATTTTTGGTACCCAAATTTTTGAATTTGGAGCCGTTTTTAGATGCTCAAAGCATTGTTGCAAACAGGCCGGCCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25406</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>70404</contig_pos>
        <strand>+</strand>
        <context>AATTCTAGAA[C/T]TGCGGAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGAGTTGTTCTGTAAGATTTCGGCATTTTTGGGATTATGAATTCTAGAA</left_flank>
        <right_flank>TGCGGAATTTTTGGTACCCAAATTTTTGAATTTGGAGCCGTTTTTAGATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAGTCGAAGTGTGTACTCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGAATGTTTTCCTCTGAACATTTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAAAAAAAAAATCAATGTTCTTACTTTGCCGCTGGAATTCTGATATCCAATTTAGCCGTTGAACGTGTCGAATGCGACCCGACGACGGTAGTGGTATTCAGAATTTGATCGTTGAATTCACGGCCGACAATGATAATCCATCCGGCTTGTTTGGGTTTTGGCCATTGTGGGAGGTGCATTTGAGAGTTGTTCTGTAAGATTTCGGCATTTTTGGGATTATGAATTCTAGAATTGCGGAATTTTTGGTACCCAAATTTTTGAATTTGGAGCCGTTTTTAGATGCTCAAAGCATTGTTGCAAACAGGCCGGCCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAACAAGATATTTTGACGGATTTGATATATGATAGATCTCGACGAGGTCCATCTTACCTATACCAGGATGTTCGACTTGTTATATACTAACATGCCGCCCACCATGTTAAATTAGCTTAGAAAACACACCAATTGGAAATCAGACAATTTCTAGGTCATAGAAGTTGGTGGACTAGAAAACTCGACTTACAAAAGTTAAGCCATCCCGACACAAAAGACTTATCAGTGTGTAAGAGGAGGGGCGTGATGATGAGATTAGGTACGTGGACTGTCCAGAAGTCATTTGAAACTGTTATAGTCCATAATAATACTTGCATTATCATATTGAATGAATGCTTATTTCCCGATGGATAATTTGAACTAACTAAGGACTGAATCCAGCGGA</canonical>
            <polymorphic>TGGGAGATGAGAAACAATAGAAAATGGGAAAAATATTCTAAAGACTACAAGAAAGATATGAAAAAGCGATGAGTCATCTGGGAACAAAAAATCGAAAATTCTAGAAATTTCCAACAAAAACAAGGAAAATCAATATTTAAGAAACATCCAGTCGAAGTGTGTACTCTTGGTCGATTCCCAGATAGCAATCGCTGAGAATGTAAACGGAAAGCGAATGTTTTCCTCTGAACATTTTTATCATTGAAATACGCAAATTTAAGCTATTCTAGAAAAAAAAAATCAATGTTCTTACTTTGCCGCTGGAATTCTGATATCCAATTTAGCCGTTGAACGTGTCGAATGCGACCCGACGACGGTAGTGGTATTCAGAATTTGATCGTTGAATTCACGGCCGACAATGATAATCCATCCGGCTTGTTTGGGTTTTGGCCATTGTGGGAGGTGCATTTGAGAGTTGTTCTGTAAGATTTCGGCATTTTTGGGATTATGAATTCTAGAAYTGCGGAATTTTTGGTACCCAAATTTTTGAATTTGGAGCCGTTTTTAGATGCTCAAAGCATTGTTGCAAACAGGCCGGCCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAACAAGATATTTTGACGGATTTGATATATGATAGATCTCGACGAGGTCCATCTTACCTATACCAGGATGTTCGACTTGTTATATACTAACATGCCGCCCACCATGTTAAATTAGCTTAGAAAACACACCAATTGGAAATCAGACAATTTCTAGGTCATAGAAGTTGGTGGACTAGAAAACTCGACTTACAAAAGTTAAGCCATCCCGACACAAAAGACTTATCAGTGTGTAAGAGGAGGGGCGTGATGATGAGATTAGGTACGTGGACTGTCCAGAAGTCATTTGAAACTGTTATAGTCCATAATAATACTTGCATTATCATATTGAATGAATGCTTATTTCCCGATGGATAATTTGAACTAACTAAGGACTGAATCCAGCGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>207 196 147 107 96 53 51 33 21 15 15 13 13 9 8 8 8</canonical_bands>
                <polymorphic_bands>207 196 147 107 96 53 51 33 21 16 15 15 13 13 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCATTTGAGAGTTGTTCTGTAAG</pcr_primer_p1>
		<pcr_primer_p2>GTCGAACATCCTGGTATAGGTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCATTTGAGAGTTGTTCTGTAAGATTTCGGCATTTTTGGGATTATGAATTCTAGAATTGCGGAATTTTTGGTACCCAAATTTTTGAATTTGGAGCCGTTTTTAGATGCTCAAAGCATTGTTGCAAACAGGCCGGCCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAACAAGATATTTTGACGGATTTGATATATGATAGATCTCGACGAGGTCCATCTTACCTATACCAGGATGTTCGAC</canonical_amplicon>
		<polymorphic_amplicon>GCATTTGAGAGTTGTTCTGTAAGATTTCGGCATTTTTGGGATTATGAATTCTAGAAYTGCGGAATTTTTGGTACCCAAATTTTTGAATTTGGAGCCGTTTTTAGATGCTCAAAGCATTGTTGCAAACAGGCCGGCCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAACAAGATATTTTGACGGATTTGATATATGATAGATCTCGACGAGGTCCATCTTACCTATACCAGGATGTTCGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25407</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>80868</contig_pos>
        <strand>-</strand>
        <context>GATTTCTGTA[G/T]GTTAATCTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCCCAAAAAGCTGTGTTAAAATTTACTCACTTTTTTCCAGATTTCTGTA</left_flank>
        <right_flank>GTTAATCTTCTTGTTTCTTTAGTTTTTCATGGGGTTTTCTAGGTGTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACCTCCCACAATGGCCAAAACCCAAACAAGCCGGATGGATTATCATTGTCGGCCGTGAATTCAACGATCAAATTCTGAATACCACTACCGTCGTCGGGTCGCATTCGACACGTTCAACGGCTAAATTGGATATCAGAATTCCAGCGGCAAAGTAAGAACATTGATTTTTTTTTTCTAGAATAGCTTAAATTTGCGTATTTCAATGATAAAAATGTTCAGAGGAAAACATTCGCTTTCCGTTTACATTCTCAGCGATTGCTATCTGGGAATCGACCAAGAGTACACACTTCGACTGGATGTTTCTTAAATTATTGATTTTCCTTGTTTTTGTTGGAAATTTCTAGAATTTTCGATTTTTTGTTCCCAGATGACTCATCGCTTTTTCATATCTTTCTTGTAGTCTTTAGAATATTTTTCCCATTTTCTATTGTTTCTCATCTCCCAGTGCCTCCCAAAAAGCTGTGTTAAAATTTACTCACTTTTTTCCAGATTTCTGTATGTTAATCTTCTTGTTTCTTTAGTTTTTCATGGGGTTTTCTAGGTGTTTTCCGTTTCTTTGATTTTCGAAAATTGTATTCTTTTTTGTCTATTTGAGCACTTTGCTTGTTTCGGAATGGTCCGCACTGCACCCAGACATCAATAAACATCTTCTTTTTCAACTTTTCTCTCTTTTTTGCAAAAAAATCTACGGAAATAGGTGGAAATAGGCCGAAAACGACAAAAAAAACAAAACATCTGCAAAAAATTCACCTACAGTAGTCCGTTTAAAGGCGCATGCCGCGTTTTGTAGCAATGTACCGCAGCGAGAACTGCAACTACTGTATTTTGCAATGATTTTCGATTTTTTTTCAGAAAGTTACTTGCGCACGATGACACCGGAAAAATGCAGTTTTACATGTGAGTTTTTGCCGAAAAACCCGTTTTTAGGGTCGAAAAATTGGAATTTTCTAGAATTTACGCGATTCGATAAGCCGTATTGTCGACAATTTGCATTTTACG</canonical>
            <polymorphic>CACCTCCCACAATGGCCAAAACCCAAACAAGCCGGATGGATTATCATTGTCGGCCGTGAATTCAACGATCAAATTCTGAATACCACTACCGTCGTCGGGTCGCATTCGACACGTTCAACGGCTAAATTGGATATCAGAATTCCAGCGGCAAAGTAAGAACATTGATTTTTTTTTTCTAGAATAGCTTAAATTTGCGTATTTCAATGATAAAAATGTTCAGAGGAAAACATTCGCTTTCCGTTTACATTCTCAGCGATTGCTATCTGGGAATCGACCAAGAGTACACACTTCGACTGGATGTTTCTTAAATTATTGATTTTCCTTGTTTTTGTTGGAAATTTCTAGAATTTTCGATTTTTTGTTCCCAGATGACTCATCGCTTTTTCATATCTTTCTTGTAGTCTTTAGAATATTTTTCCCATTTTCTATTGTTTCTCATCTCCCAGTGCCTCCCAAAAAGCTGTGTTAAAATTTACTCACTTTTTTCCAGATTTCTGTAKGTTAATCTTCTTGTTTCTTTAGTTTTTCATGGGGTTTTCTAGGTGTTTTCCGTTTCTTTGATTTTCGAAAATTGTATTCTTTTTTGTCTATTTGAGCACTTTGCTTGTTTCGGAATGGTCCGCACTGCACCCAGACATCAATAAACATCTTCTTTTTCAACTTTTCTCTCTTTTTTGCAAAAAAATCTACGGAAATAGGTGGAAATAGGCCGAAAACGACAAAAAAAACAAAACATCTGCAAAAAATTCACCTACAGTAGTCCGTTTAAAGGCGCATGCCGCGTTTTGTAGCAATGTACCGCAGCGAGAACTGCAACTACTGTATTTTGCAATGATTTTCGATTTTTTTTCAGAAAGTTACTTGCGCACGATGACACCGGAAAAATGCAGTTTTACATGTGAGTTTTTGCCGAAAAACCCGTTTTTAGGGTCGAAAAATTGGAATTTTCTAGAATTTACGCGATTCGATAAGCCGTATTGTCGACAATTTGCATTTTACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCCCATTTTCTATTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TGAAAAAGAAGATGTTTATTGATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCCCATTTTCTATTGTTTCTCATCTCCCAGTGCCTCCCAAAAAGCTGTGTTAAAATTTACTCACTTTTTTCCAGATTTCTGTATGTTAATCTTCTTGTTTCTTTAGTTTTTCATGGGGTTTTCTAGGTGTTTTCCGTTTCTTTGATTTTCGAAAATTGTATTCTTTTTTGTCTATTTGAGCACTTTGCTTGTTTCGGAATGGTCCGCACTGCACCCAGACATCAATAAACATCTTCTTTTTCA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCCCATTTTCTATTGTTTCTCATCTCCCAGTGCCTCCCAAAAAGCTGTGTTAAAATTTACTCACTTTTTTCCAGATTTCTGTAKGTTAATCTTCTTGTTTCTTTAGTTTTTCATGGGGTTTTCTAGGTGTTTTCCGTTTCTTTGATTTTCGAAAATTGTATTCTTTTTTGTCTATTTGAGCACTTTGCTTGTTTCGGAATGGTCCGCACTGCACCCAGACATCAATAAACATCTTCTTTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25408</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>80946</contig_pos>
        <strand>-</strand>
        <context>AAAATTGTAT[A/G]CTTTTTTGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATGGGGTTTTCTAGGTGTTTTCCGTTTCTTTGATTTTCGAAAATTGTAT</left_flank>
        <right_flank>CTTTTTTGTCTATTTGAGCACTTTGCTTGTTTCGGAATGGTCCGCACTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATACCACTACCGTCGTCGGGTCGCATTCGACACGTTCAACGGCTAAATTGGATATCAGAATTCCAGCGGCAAAGTAAGAACATTGATTTTTTTTTTCTAGAATAGCTTAAATTTGCGTATTTCAATGATAAAAATGTTCAGAGGAAAACATTCGCTTTCCGTTTACATTCTCAGCGATTGCTATCTGGGAATCGACCAAGAGTACACACTTCGACTGGATGTTTCTTAAATTATTGATTTTCCTTGTTTTTGTTGGAAATTTCTAGAATTTTCGATTTTTTGTTCCCAGATGACTCATCGCTTTTTCATATCTTTCTTGTAGTCTTTAGAATATTTTTCCCATTTTCTATTGTTTCTCATCTCCCAGTGCCTCCCAAAAAGCTGTGTTAAAATTTACTCACTTTTTTCCAGATTTCTGTATGTTAATCTTCTTGTTTCTTTAGTTTTTCATGGGGTTTTCTAGGTGTTTTCCGTTTCTTTGATTTTCGAAAATTGTATTCTTTTTTGTCTATTTGAGCACTTTGCTTGTTTCGGAATGGTCCGCACTGCACCCAGACATCAATAAACATCTTCTTTTTCAACTTTTCTCTCTTTTTTGCAAAAAAATCTACGGAAATAGGTGGAAATAGGCCGAAAACGACAAAAAAAACAAAACATCTGCAAAAAATTCACCTACAGTAGTCCGTTTAAAGGCGCATGCCGCGTTTTGTAGCAATGTACCGCAGCGAGAACTGCAACTACTGTATTTTGCAATGATTTTCGATTTTTTTTCAGAAAGTTACTTGCGCACGATGACACCGGAAAAATGCAGTTTTACATGTGAGTTTTTGCCGAAAAACCCGTTTTTAGGGTCGAAAAATTGGAATTTTCTAGAATTTACGCGATTCGATAAGCCGTATTGTCGACAATTTGCATTTTACGAGCATCGACGAAGCTGCGCATGCCCGGCTCGTTGGTCTANTCNCCAATAACCTNACNACNATGGATTACACNTTTCCA</canonical>
            <polymorphic>AATACCACTACCGTCGTCGGGTCGCATTCGACACGTTCAACGGCTAAATTGGATATCAGAATTCCAGCGGCAAAGTAAGAACATTGATTTTTTTTTTCTAGAATAGCTTAAATTTGCGTATTTCAATGATAAAAATGTTCAGAGGAAAACATTCGCTTTCCGTTTACATTCTCAGCGATTGCTATCTGGGAATCGACCAAGAGTACACACTTCGACTGGATGTTTCTTAAATTATTGATTTTCCTTGTTTTTGTTGGAAATTTCTAGAATTTTCGATTTTTTGTTCCCAGATGACTCATCGCTTTTTCATATCTTTCTTGTAGTCTTTAGAATATTTTTCCCATTTTCTATTGTTTCTCATCTCCCAGTGCCTCCCAAAAAGCTGTGTTAAAATTTACTCACTTTTTTCCAGATTTCTGTATGTTAATCTTCTTGTTTCTTTAGTTTTTCATGGGGTTTTCTAGGTGTTTTCCGTTTCTTTGATTTTCGAAAATTGTATRCTTTTTTGTCTATTTGAGCACTTTGCTTGTTTCGGAATGGTCCGCACTGCACCCAGACATCAATAAACATCTTCTTTTTCAACTTTTCTCTCTTTTTTGCAAAAAAATCTACGGAAATAGGTGGAAATAGGCCGAAAACGACAAAAAAAACAAAACATCTGCAAAAAATTCACCTACAGTAGTCCGTTTAAAGGCGCATGCCGCGTTTTGTAGCAATGTACCGCAGCGAGAACTGCAACTACTGTATTTTGCAATGATTTTCGATTTTTTTTCAGAAAGTTACTTGCGCACGATGACACCGGAAAAATGCAGTTTTACATGTGAGTTTTTGCCGAAAAACCCGTTTTTAGGGTCGAAAAATTGGAATTTTCTAGAATTTACGCGATTCGATAAGCCGTATTGTCGACAATTTGCATTTTACGAGCATCGACGAAGCTGCGCATGCCCGGCTCGTTGGTCTANTCNCCAATAACCTNACNACNATGGATTACACNTTTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCCCATTTTCTATTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TGAAAAAGAAGATGTTTATTGATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCCCATTTTCTATTGTTTCTCATCTCCCAGTGCCTCCCAAAAAGCTGTGTTAAAATTTACTCACTTTTTTCCAGATTTCTGTATGTTAATCTTCTTGTTTCTTTAGTTTTTCATGGGGTTTTCTAGGTGTTTTCCGTTTCTTTGATTTTCGAAAATTGTATTCTTTTTTGTCTATTTGAGCACTTTGCTTGTTTCGGAATGGTCCGCACTGCACCCAGACATCAATAAACATCTTCTTTTTCA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCCCATTTTCTATTGTTTCTCATCTCCCAGTGCCTCCCAAAAAGCTGTGTTAAAATTTACTCACTTTTTTCCAGATTTCTGTATGTTAATCTTCTTGTTTCTTTAGTTTTTCATGGGGTTTTCTAGGTGTTTTCCGTTTCTTTGATTTTCGAAAATTGTATRCTTTTTTGTCTATTTGAGCACTTTGCTTGTTTCGGAATGGTCCGCACTGCACCCAGACATCAATAAACATCTTCTTTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25409</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>82631</contig_pos>
        <strand></strand>
        <context>ctagaatttt[C/G]aGTCTGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTT</left_flank>
        <right_flank>AGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTT</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGATCGCCGAGAGAACGAGCGTCTTCGTAATTTAGATGAGGAAGGCATAGAAGGGGATGATCGTCGTGCCATCTGAAAGAGAAAAACAAACGAATTTCAATCAATTATCGATTTTTCAAAACAAACCTAGCAGAATGACACATTTGTTGCAACAAGACAATATTCATAGTTGCACTCAACCAATTTTTGAGTCTTGCCATTTCTCTCATCGCTTGCAAAATGCGAATACACTGATCCAGAACACTCTTCAAATCGGTCCGGTAATCGGTTGGGAGAAGGGTTCGCATGAAATGAGCTTGGAATAGAAGGTGTGCTTTACATGCCGATGTTCCCATTACTGATGTTGAGAAACGGACTCGCAGCTTTTTCTGGAAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAATATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCA</canonical>
            <polymorphic>GATGATCGCCGAGAGAACGAGCGTCTTCGTAATTTAGATGAGGAAGGCATAGAAGGGGATGATCGTCGTGCCATCTGAAAGAGAAAAACAAACGAATTTCAATCAATTATCGATTTTTCAAAACAAACCTAGCAGAATGACACATTTGTTGCAACAAGACAATATTCATAGTTGCACTCAACCAATTTTTGAGTCTTGCCATTTCTCTCATCGCTTGCAAAATGCGAATACACTGATCCAGAACACTCTTCAAATCGGTCCGGTAATCGGTTGGGAGAAGGGTTCGCATGAAATGAGCTTGGAATAGAAGGTGTGCTTTACATGCCGATGTTCCCATTACTGATGTTGAGAAACGGACTCGCAGCTTTTTCTGGAAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTSAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAATATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCGGGAGAGTAGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CAACATTTTCCGAATTCACT</pcr_primer_p2>
		<pcr_amplicon_size>389</pcr_amplicon_size>
		<canonical_amplicon>AAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTG</canonical_amplicon>
		<polymorphic_amplicon>AAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTSAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25410</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>82658</contig_pos>
        <strand>-</strand>
        <context>TACTTCAAAG[C/T]TTTTGTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAG</left_flank>
        <right_flank>TTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTAATTTAGATGAGGAAGGCATAGAAGGGGATGATCGTCGTGCCATCTGAAAGAGAAAAACAAACGAATTTCAATCAATTATCGATTTTTCAAAACAAACCTAGCAGAATGACACATTTGTTGCAACAAGACAATATTCATAGTTGCACTCAACCAATTTTTGAGTCTTGCCATTTCTCTCATCGCTTGCAAAATGCGAATACACTGATCCAGAACACTCTTCAAATCGGTCCGGTAATCGGTTGGGAGAAGGGTTCGCATGAAATGAGCTTGGAATAGAAGGTGTGCTTTACATGCCGATGTTCCCATTACTGATGTTGAGAAACGGACTCGCAGCTTTTTCTGGAAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAATATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTT</canonical>
            <polymorphic>CGTAATTTAGATGAGGAAGGCATAGAAGGGGATGATCGTCGTGCCATCTGAAAGAGAAAAACAAACGAATTTCAATCAATTATCGATTTTTCAAAACAAACCTAGCAGAATGACACATTTGTTGCAACAAGACAATATTCATAGTTGCACTCAACCAATTTTTGAGTCTTGCCATTTCTCTCATCGCTTGCAAAATGCGAATACACTGATCCAGAACACTCTTCAAATCGGTCCGGTAATCGGTTGGGAGAAGGGTTCGCATGAAATGAGCTTGGAATAGAAGGTGTGCTTTACATGCCGATGTTCCCATTACTGATGTTGAGAAACGGACTCGCAGCTTTTTCTGGAAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGYTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAATATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCGGGAGAGTAGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CAACATTTTCCGAATTCACT</pcr_primer_p2>
		<pcr_amplicon_size>389</pcr_amplicon_size>
		<canonical_amplicon>AAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTG</canonical_amplicon>
		<polymorphic_amplicon>AAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGYTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25411</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>82695</contig_pos>
        <strand></strand>
        <context>TACATTACTA[A/G]ATTATCAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTA</left_flank>
        <right_flank>ATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCGTGCCATCTGAAAGAGAAAAACAAACGAATTTCAATCAATTATCGATTTTTCAAAACAAACCTAGCAGAATGACACATTTGTTGCAACAAGACAATATTCATAGTTGCACTCAACCAATTTTTGAGTCTTGCCATTTCTCTCATCGCTTGCAAAATGCGAATACACTGATCCAGAACACTCTTCAAATCGGTCCGGTAATCGGTTGGGAGAAGGGTTCGCATGAAATGAGCTTGGAATAGAAGGTGTGCTTTACATGCCGATGTTCCCATTACTGATGTTGAGAAACGGACTCGCAGCTTTTTCTGGAAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAATATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAGGATTTCCGAATTTCTGAAATCCAGAAGTTCTTAA</canonical>
            <polymorphic>GTCGTGCCATCTGAAAGAGAAAAACAAACGAATTTCAATCAATTATCGATTTTTCAAAACAAACCTAGCAGAATGACACATTTGTTGCAACAAGACAATATTCATAGTTGCACTCAACCAATTTTTGAGTCTTGCCATTTCTCTCATCGCTTGCAAAATGCGAATACACTGATCCAGAACACTCTTCAAATCGGTCCGGTAATCGGTTGGGAGAAGGGTTCGCATGAAATGAGCTTGGAATAGAAGGTGTGCTTTACATGCCGATGTTCCCATTACTGATGTTGAGAAACGGACTCGCAGCTTTTTCTGGAAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTARATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAATATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAGGATTTCCGAATTTCTGAAATCCAGAAGTTCTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>208 79 70 42 40 34 33 30 28 26 25 24 24 19 18 18 17 17 17 17 16 15 15 12 10 10 9 9 9 9 9 8 8 8 8 8 8 8 7 7 7 7 7</canonical_bands>
                <polymorphic_bands>208 79 79 42 40 34 33 30 28 26 25 24 24 19 18 18 17 17 17 17 16 15 15 12 10 10 9 9 9 9 8 8 8 8 8 8 8 7 7 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCGGGAGAGTAGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CAACATTTTCCGAATTCACT</pcr_primer_p2>
		<pcr_amplicon_size>389</pcr_amplicon_size>
		<canonical_amplicon>AAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTG</canonical_amplicon>
		<polymorphic_amplicon>AAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTARATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25412</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>82717</contig_pos>
        <strand>-</strand>
        <context>TTCGAAAAGT[A/G/C/T]TACAATTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G/C/T</alleles>
        <left_flank>TTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGT</left_flank>
        <right_flank>TACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAAACGAATTTCAATCAATTATCGATTTTTCAAAACAAACCTAGCAGAATGACACATTTGTTGCAACAAGACAATATTCATAGTTGCACTCAACCAATTTTTGAGTCTTGCCATTTCTCTCATCGCTTGCAAAATGCGAATACACTGATCCAGAACACTCTTCAAATCGGTCCGGTAATCGGTTGGGAGAAGGGTTCGCATGAAATGAGCTTGGAATAGAAGGTGTGCTTTACATGCCGATGTTCCCATTACTGATGTTGAGAAACGGACTCGCAGCTTTTTCTGGAAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAATATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAGGATTTCCGAATTTCTGAAATCCAGAAGTTCTTAAATCTACCCTACCTGCAACTCGG</canonical>
            <polymorphic>AACAAACGAATTTCAATCAATTATCGATTTTTCAAAACAAACCTAGCAGAATGACACATTTGTTGCAACAAGACAATATTCATAGTTGCACTCAACCAATTTTTGAGTCTTGCCATTTCTCTCATCGCTTGCAAAATGCGAATACACTGATCCAGAACACTCTTCAAATCGGTCCGGTAATCGGTTGGGAGAAGGGTTCGCATGAAATGAGCTTGGAATAGAAGGTGTGCTTTACATGCCGATGTTCCCATTACTGATGTTGAGAAACGGACTCGCAGCTTTTTCTGGAAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTRTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAATATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAGGATTTCCGAATTTCTGAAATCCAGAAGTTCTTAAATCTACCCTACCTGCAACTCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCGGGAGAGTAGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CAACATTTTCCGAATTCACT</pcr_primer_p2>
		<pcr_amplicon_size>389</pcr_amplicon_size>
		<canonical_amplicon>AAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTG</canonical_amplicon>
		<polymorphic_amplicon>AAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTRTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25413</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>82754</contig_pos>
        <strand></strand>
        <context>Attttctgat[T/C]attttgaaca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGAT</left_flank>
        <right_flank>ATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAACCTAGCAGAATGACACATTTGTTGCAACAAGACAATATTCATAGTTGCACTCAACCAATTTTTGAGTCTTGCCATTTCTCTCATCGCTTGCAAAATGCGAATACACTGATCCAGAACACTCTTCAAATCGGTCCGGTAATCGGTTGGGAGAAGGGTTCGCATGAAATGAGCTTGGAATAGAAGGTGTGCTTTACATGCCGATGTTCCCATTACTGATGTTGAGAAACGGACTCGCAGCTTTTTCTGGAAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAATATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAGGATTTCCGAATTTCTGAAATCCAGAAGTTCTTAAATCTACCCTACCTGCAACTCGGTATTAATCAAATCCTCATTGTGTCGAACCGGAATCTC</canonical>
            <polymorphic>CAAACCTAGCAGAATGACACATTTGTTGCAACAAGACAATATTCATAGTTGCACTCAACCAATTTTTGAGTCTTGCCATTTCTCTCATCGCTTGCAAAATGCGAATACACTGATCCAGAACACTCTTCAAATCGGTCCGGTAATCGGTTGGGAGAAGGGTTCGCATGAAATGAGCTTGGAATAGAAGGTGTGCTTTACATGCCGATGTTCCCATTACTGATGTTGAGAAACGGACTCGCAGCTTTTTCTGGAAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATYATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAATATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAGGATTTCCGAATTTCTGAAATCCAGAAGTTCTTAAATCTACCCTACCTGCAACTCGGTATTAATCAAATCCTCATTGTGTCGAACCGGAATCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCGGGAGAGTAGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CAACATTTTCCGAATTCACT</pcr_primer_p2>
		<pcr_amplicon_size>389</pcr_amplicon_size>
		<canonical_amplicon>AAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTG</canonical_amplicon>
		<polymorphic_amplicon>AAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATYATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25414</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>82782</contig_pos>
        <strand></strand>
        <context>attccaagtt[A/T]tccaaatttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTT</left_flank>
        <right_flank>TCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACAAGACAATATTCATAGTTGCACTCAACCAATTTTTGAGTCTTGCCATTTCTCTCATCGCTTGCAAAATGCGAATACACTGATCCAGAACACTCTTCAAATCGGTCCGGTAATCGGTTGGGAGAAGGGTTCGCATGAAATGAGCTTGGAATAGAAGGTGTGCTTTACATGCCGATGTTCCCATTACTGATGTTGAGAAACGGACTCGCAGCTTTTTCTGGAAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAATATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAGGATTTCCGAATTTCTGAAATCCAGAAGTTCTTAAATCTACCCTACCTGCAACTCGGTATTAATCAAATCCTCATTGTGTCGAACCGGAATCTCCGCATACTCCGGCACATCTGTCAACGCC</canonical>
            <polymorphic>CAACAAGACAATATTCATAGTTGCACTCAACCAATTTTTGAGTCTTGCCATTTCTCTCATCGCTTGCAAAATGCGAATACACTGATCCAGAACACTCTTCAAATCGGTCCGGTAATCGGTTGGGAGAAGGGTTCGCATGAAATGAGCTTGGAATAGAAGGTGTGCTTTACATGCCGATGTTCCCATTACTGATGTTGAGAAACGGACTCGCAGCTTTTTCTGGAAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTWTCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAATATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAGGATTTCCGAATTTCTGAAATCCAGAAGTTCTTAAATCTACCCTACCTGCAACTCGGTATTAATCAAATCCTCATTGTGTCGAACCGGAATCTCCGCATACTCCGGCACATCTGTCAACGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCGGGAGAGTAGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CAACATTTTCCGAATTCACT</pcr_primer_p2>
		<pcr_amplicon_size>389</pcr_amplicon_size>
		<canonical_amplicon>AAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTG</canonical_amplicon>
		<polymorphic_amplicon>AAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTWTCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25415</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>82803</contig_pos>
        <strand></strand>
        <context>ggaatttcga[A/G]attctgaatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGA</left_flank>
        <right_flank>ATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCACTCAACCAATTTTTGAGTCTTGCCATTTCTCTCATCGCTTGCAAAATGCGAATACACTGATCCAGAACACTCTTCAAATCGGTCCGGTAATCGGTTGGGAGAAGGGTTCGCATGAAATGAGCTTGGAATAGAAGGTGTGCTTTACATGCCGATGTTCCCATTACTGATGTTGAGAAACGGACTCGCAGCTTTTTCTGGAAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAATATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAGGATTTCCGAATTTCTGAAATCCAGAAGTTCTTAAATCTACCCTACCTGCAACTCGGTATTAATCAAATCCTCATTGTGTCGAACCGGAATCTCCGCATACTCCGGCACATCTGTCAACGCCTTCAACATCTGTTCAACAGTA</canonical>
            <polymorphic>TGCACTCAACCAATTTTTGAGTCTTGCCATTTCTCTCATCGCTTGCAAAATGCGAATACACTGATCCAGAACACTCTTCAAATCGGTCCGGTAATCGGTTGGGAGAAGGGTTCGCATGAAATGAGCTTGGAATAGAAGGTGTGCTTTACATGCCGATGTTCCCATTACTGATGTTGAGAAACGGACTCGCAGCTTTTTCTGGAAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGARATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAATATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAGGATTTCCGAATTTCTGAAATCCAGAAGTTCTTAAATCTACCCTACCTGCAACTCGGTATTAATCAAATCCTCATTGTGTCGAACCGGAATCTCCGCATACTCCGGCACATCTGTCAACGCCTTCAACATCTGTTCAACAGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>219 134 79 76 42 41 40 35 32 25 24 24 19 19 18 17 17 17 16 10 9 9 9 8 8 8 8 8 8 7 7 7</canonical_bands>
                <polymorphic_bands>219 134 79 76 42 41 40 35 32 25 24 24 19 19 18 17 17 17 16 15 10 9 9 9 8 8 8 8 8 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>233 196 160 114 91 81 58 42 25</canonical_bands>
                <polymorphic_bands>287 233 160 114 81 58 42 25</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>208 134 70 42 40 34 33 28 25 24 24 19 18 18 17 17 17 17 16 15 15 12 11 10 9 9 9 9 9 8 8 8 8 8 8 8 7 7 7 7 7</canonical_bands>
                <polymorphic_bands>208 134 70 42 40 34 33 28 25 24 24 19 18 18 17 17 17 17 16 15 15 15 12 11 10 9 9 9 9 9 8 8 8 8 8 8 7 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCGGGAGAGTAGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CAACATTTTCCGAATTCACT</pcr_primer_p2>
		<pcr_amplicon_size>389</pcr_amplicon_size>
		<canonical_amplicon>AAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTG</canonical_amplicon>
		<polymorphic_amplicon>AAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGARATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25416</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>82905</contig_pos>
        <strand>-</strand>
        <context>AAATTCTGAA[A/G/T/C]ATTTCCAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G/T/C</alleles>
        <left_flank>TCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAA</left_flank>
        <right_flank>ATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAAGGGTTCGCATGAAATGAGCTTGGAATAGAAGGTGTGCTTTACATGCCGATGTTCCCATTACTGATGTTGAGAAACGGACTCGCAGCTTTTTCTGGAAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAATATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAGGATTTCCGAATTTCTGAAATCCAGAAGTTCTTAAATCTACCCTACCTGCAACTCGGTATTAATCAAATCCTCATTGTGTCGAACCGGAATCTCCGCATACTCCGGCACATCTGTCAACGCCTTCAACATCTGTTCAACAGTACATCCCGAATGCAACGTCTTCACCAAGAATCGAATCGTTTCGTGTTGCAAATAATAAACCGATGCGATTCTACCAAACGCCGTCGGTCCGATGATGTCATTC</canonical>
            <polymorphic>GAGAAGGGTTCGCATGAAATGAGCTTGGAATAGAAGGTGTGCTTTACATGCCGATGTTCCCATTACTGATGTTGAGAAACGGACTCGCAGCTTTTTCTGGAAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAARATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAGGATTTCCGAATTTCTGAAATCCAGAAGTTCTTAAATCTACCCTACCTGCAACTCGGTATTAATCAAATCCTCATTGTGTCGAACCGGAATCTCCGCATACTCCGGCACATCTGTCAACGCCTTCAACATCTGTTCAACAGTACATCCCGAATGCAACGTCTTCACCAAGAATCGAATCGTTTCGTGTTGCAAATAATAAACCGATGCGATTCTACCAAACGCCGTCGGTCCGATGATGTCATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCGGGAGAGTAGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCTGAAAATCTGTAATTTTGATAGTT</pcr_primer_p2>
		<pcr_amplicon_size>484</pcr_amplicon_size>
		<canonical_amplicon>AAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAATATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGA</canonical_amplicon>
		<polymorphic_amplicon>AAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAARATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25417</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>82918</contig_pos>
        <strand>-</strand>
        <context>TTCCAAATAA[A/G/C/T]TTGCAACATT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G/C/T</alleles>
        <left_flank>GTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAATATTTCCAAATAA</left_flank>
        <right_flank>TTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAAATGAGCTTGGAATAGAAGGTGTGCTTTACATGCCGATGTTCCCATTACTGATGTTGAGAAACGGACTCGCAGCTTTTTCTGGAAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAATATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAGGATTTCCGAATTTCTGAAATCCAGAAGTTCTTAAATCTACCCTACCTGCAACTCGGTATTAATCAAATCCTCATTGTGTCGAACCGGAATCTCCGCATACTCCGGCACATCTGTCAACGCCTTCAACATCTGTTCAACAGTACATCCCGAATGCAACGTCTTCACCAAGAATCGAATCGTTTCGTGTTGCAAATAATAAACCGATGCGATTCTACCAAACGCCGTCGGTCCGATGATGTCATTCTCCGAATCCACGT</canonical>
            <polymorphic>ATGAAATGAGCTTGGAATAGAAGGTGTGCTTTACATGCCGATGTTCCCATTACTGATGTTGAGAAACGGACTCGCAGCTTTTTCTGGAAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAATATTTCCAAATAARTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAGGATTTCCGAATTTCTGAAATCCAGAAGTTCTTAAATCTACCCTACCTGCAACTCGGTATTAATCAAATCCTCATTGTGTCGAACCGGAATCTCCGCATACTCCGGCACATCTGTCAACGCCTTCAACATCTGTTCAACAGTACATCCCGAATGCAACGTCTTCACCAAGAATCGAATCGTTTCGTGTTGCAAATAATAAACCGATGCGATTCTACCAAACGCCGTCGGTCCGATGATGTCATTCTCCGAATCCACGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCGGGAGAGTAGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCTGAAAATCTGTAATTTTGATAGTT</pcr_primer_p2>
		<pcr_amplicon_size>484</pcr_amplicon_size>
		<canonical_amplicon>AAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAATATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGA</canonical_amplicon>
		<polymorphic_amplicon>AAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAATATTTCCAAATAARTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25418</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>83005</contig_pos>
        <strand>-</strand>
        <context>TCGAATCTTT[A/T]TAATTTTCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTTGTAAACTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTT</left_flank>
        <right_flank>TAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAATATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAGGATTTCCGAATTTCTGAAATCCAGAAGTTCTTAAATCTACCCTACCTGCAACTCGGTATTAATCAAATCCTCATTGTGTCGAACCGGAATCTCCGCATACTCCGGCACATCTGTCAACGCCTTCAACATCTGTTCAACAGTACATCCCGAATGCAACGTCTTCACCAAGAATCGAATCGTTTCGTGTTGCAAATAATAAACCGATGCGATTCTACCAAACGCCGTCGGTCCGATGATGTCATTCTCCGAATCCACGTGGATACATTCCGATTCGAGGAGCTCCGAAACAGAGCCATCGACGATTTGAGAAATGAATTTGAGCATTGATTCTTCGGAATCTTCAT</canonical>
            <polymorphic>AAATCGGGAGAGTAGGAAATTTTGAAAATTTCGAATTTCTGAGTTTTCAGCTATTTTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAATATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTWTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAGGATTTCCGAATTTCTGAAATCCAGAAGTTCTTAAATCTACCCTACCTGCAACTCGGTATTAATCAAATCCTCATTGTGTCGAACCGGAATCTCCGCATACTCCGGCACATCTGTCAACGCCTTCAACATCTGTTCAACAGTACATCCCGAATGCAACGTCTTCACCAAGAATCGAATCGTTTCGTGTTGCAAATAATAAACCGATGCGATTCTACCAAACGCCGTCGGTCCGATGATGTCATTCTCCGAATCCACGTGGATACATTCCGATTCGAGGAGCTCCGAAACAGAGCCATCGACGATTTGAGAAATGAATTTGAGCATTGATTCTTCGGAATCTTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>285 236 132 103 99 55 55 28 7</canonical_bands>
                <polymorphic_bands>285 236 132 110 103 99 28 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGAAAATGTTGAAATTCTG</pcr_primer_p1>
		<pcr_primer_p2>CGAAAATATAGAAATGCTGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>CGGAAAATGTTGAAATTCTGAATATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCG</canonical_amplicon>
		<polymorphic_amplicon>CGGAAAATGTTGAAATTCTGAATATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTWTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25419</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>83060</contig_pos>
        <strand>-</strand>
        <context>TTTAGGTATT[A/G/T/C]TKAGTTTCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G/T/C</alleles>
        <left_flank>TTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATT</left_flank>
        <right_flank>TAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAATATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAGGATTTCCGAATTTCTGAAATCCAGAAGTTCTTAAATCTACCCTACCTGCAACTCGGTATTAATCAAATCCTCATTGTGTCGAACCGGAATCTCCGCATACTCCGGCACATCTGTCAACGCCTTCAACATCTGTTCAACAGTACATCCCGAATGCAACGTCTTCACCAAGAATCGAATCGTTTCGTGTTGCAAATAATAAACCGATGCGATTCTACCAAACGCCGTCGGTCCGATGATGTCATTCTCCGAATCCACGTGGATACATTCCGATTCGAGGAGCTCCGAAACAGAGCCATCGACGATTTGAGAAATGAATTTGAGCATTGATTCTTCGGAATCTTCATCTAGACCATAATAATTGGGATTGGCAAATAGTCTTCGATAGAGATAGGTTCCTGA</canonical>
            <polymorphic>TTGGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAATATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTRTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAGGATTTCCGAATTTCTGAAATCCAGAAGTTCTTAAATCTACCCTACCTGCAACTCGGTATTAATCAAATCCTCATTGTGTCGAACCGGAATCTCCGCATACTCCGGCACATCTGTCAACGCCTTCAACATCTGTTCAACAGTACATCCCGAATGCAACGTCTTCACCAAGAATCGAATCGTTTCGTGTTGCAAATAATAAACCGATGCGATTCTACCAAACGCCGTCGGTCCGATGATGTCATTCTCCGAATCCACGTGGATACATTCCGATTCGAGGAGCTCCGAAACAGAGCCATCGACGATTTGAGAAATGAATTTGAGCATTGATTCTTCGGAATCTTCATCTAGACCATAATAATTGGGATTGGCAAATAGTCTTCGATAGAGATAGGTTCCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>340 181 132 103 99 55 55 28 7</canonical_bands>
                <polymorphic_bands>340 187 181 103 99 55 28 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATCAAAATTACAGATTTTCAGATT</pcr_primer_p1>
		<pcr_primer_p2>GCAGGTAGGGTAGATTTAAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAGGATTTCCGAATTTCTGAAATCCAGAAGTTCTTAAATCTACCCTACCTGC</canonical_amplicon>
		<polymorphic_amplicon>CTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTRTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAGGATTTCCGAATTTCTGAAATCCAGAAGTTCTTAAATCTACCCTACCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25420</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>83062</contig_pos>
        <strand>-</strand>
        <context>TAGGTATTRT[G/T/A/C]AGTTTCTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T/A/C</alleles>
        <left_flank>TCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTT</left_flank>
        <right_flank>AGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAATATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAGGATTTCCGAATTTCTGAAATCCAGAAGTTCTTAAATCTACCCTACCTGCAACTCGGTATTAATCAAATCCTCATTGTGTCGAACCGGAATCTCCGCATACTCCGGCACATCTGTCAACGCCTTCAACATCTGTTCAACAGTACATCCCGAATGCAACGTCTTCACCAAGAATCGAATCGTTTCGTGTTGCAAATAATAAACCGATGCGATTCTACCAAACGCCGTCGGTCCGATGATGTCATTCTCCGAATCCACGTGGATACATTCCGATTCGAGGAGCTCCGAAACAGAGCCATCGACGATTTGAGAAATGAATTTGAGCATTGATTCTTCGGAATCTTCATCTAGACCATAATAATTGGGATTGGCAAATAGTCTTCGATAGAGATAGGTTCCTGATA</canonical>
            <polymorphic>GGGATTTCGGTTCTCTGAAATTCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAATATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTKAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAGGATTTCCGAATTTCTGAAATCCAGAAGTTCTTAAATCTACCCTACCTGCAACTCGGTATTAATCAAATCCTCATTGTGTCGAACCGGAATCTCCGCATACTCCGGCACATCTGTCAACGCCTTCAACATCTGTTCAACAGTACATCCCGAATGCAACGTCTTCACCAAGAATCGAATCGTTTCGTGTTGCAAATAATAAACCGATGCGATTCTACCAAACGCCGTCGGTCCGATGATGTCATTCTCCGAATCCACGTGGATACATTCCGATTCGAGGAGCTCCGAAACAGAGCCATCGACGATTTGAGAAATGAATTTGAGCATTGATTCTTCGGAATCTTCATCTAGACCATAATAATTGGGATTGGCAAATAGTCTTCGATAGAGATAGGTTCCTGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>342 179 132 103 99 55 55 28 7</canonical_bands>
                <polymorphic_bands>342 187 179 103 99 55 28 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATCAAAATTACAGATTTTCAGATT</pcr_primer_p1>
		<pcr_primer_p2>GCAGGTAGGGTAGATTTAAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAGGATTTCCGAATTTCTGAAATCCAGAAGTTCTTAAATCTACCCTACCTGC</canonical_amplicon>
		<polymorphic_amplicon>CTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTKAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAGGATTTCCGAATTTCTGAAATCCAGAAGTTCTTAAATCTACCCTACCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25421</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>83083</contig_pos>
        <strand>-</strand>
        <context>TTTTCGAATT[A/G/C/T]CTGAAAATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G/C/T</alleles>
        <left_flank>TTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATT</left_flank>
        <right_flank>CTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAATATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAGGATTTCCGAATTTCTGAAATCCAGAAGTTCTTAAATCTACCCTACCTGCAACTCGGTATTAATCAAATCCTCATTGTGTCGAACCGGAATCTCCGCATACTCCGGCACATCTGTCAACGCCTTCAACATCTGTTCAACAGTACATCCCGAATGCAACGTCTTCACCAAGAATCGAATCGTTTCGTGTTGCAAATAATAAACCGATGCGATTCTACCAAACGCCGTCGGTCCGATGATGTCATTCTCCGAATCCACGTGGATACATTCCGATTCGAGGAGCTCCGAAACAGAGCCATCGACGATTTGAGAAATGAATTTGAGCATTGATTCTTCGGAATCTTCATCTAGACCATAATAATTGGGATTGGCAAATAGTCTTCGATAGAGATAGGTTCCTGATAGATACTCAACAATTCCCTGCT</canonical>
            <polymorphic>TCCAAGTATTTCGAAATTTGAACGAACTTCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAATATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTRCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAGGATTTCCGAATTTCTGAAATCCAGAAGTTCTTAAATCTACCCTACCTGCAACTCGGTATTAATCAAATCCTCATTGTGTCGAACCGGAATCTCCGCATACTCCGGCACATCTGTCAACGCCTTCAACATCTGTTCAACAGTACATCCCGAATGCAACGTCTTCACCAAGAATCGAATCGTTTCGTGTTGCAAATAATAAACCGATGCGATTCTACCAAACGCCGTCGGTCCGATGATGTCATTCTCCGAATCCACGTGGATACATTCCGATTCGAGGAGCTCCGAAACAGAGCCATCGACGATTTGAGAAATGAATTTGAGCATTGATTCTTCGGAATCTTCATCTAGACCATAATAATTGGGATTGGCAAATAGTCTTCGATAGAGATAGGTTCCTGATAGATACTCAACAATTCCCTGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>305 109 79 76 41 40 35 32 25 24 24 19 19 18 17 17 16 14 10 9 9 8 8 8 8 8 8 7 7</canonical_bands>
                <polymorphic_bands>305 109 79 76 41 40 35 32 25 24 24 19 19 18 18 17 17 16 14 9 9 8 8 8 8 8 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>505 226 200 69</canonical_bands>
                <polymorphic_bands>705 226 69</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>227 202 199 125 99 50 38 33 27</canonical_bands>
                <polymorphic_bands>326 202 199 125 50 38 33 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATCAAAATTACAGATTTTCAGATT</pcr_primer_p1>
		<pcr_primer_p2>GCAGGTAGGGTAGATTTAAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAGGATTTCCGAATTTCTGAAATCCAGAAGTTCTTAAATCTACCCTACCTGC</canonical_amplicon>
		<polymorphic_amplicon>CTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTRCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAGGATTTCCGAATTTCTGAAATCCAGAAGTTCTTAAATCTACCCTACCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25422</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>83111</contig_pos>
        <strand>-</strand>
        <context>TCGAAAATTC[A/T]GAATTTACAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTC</left_flank>
        <right_flank>GAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAATATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAGGATTTCCGAATTTCTGAAATCCAGAAGTTCTTAAATCTACCCTACCTGCAACTCGGTATTAATCAAATCCTCATTGTGTCGAACCGGAATCTCCGCATACTCCGGCACATCTGTCAACGCCTTCAACATCTGTTCAACAGTACATCCCGAATGCAACGTCTTCACCAAGAATCGAATCGTTTCGTGTTGCAAATAATAAACCGATGCGATTCTACCAAACGCCGTCGGTCCGATGATGTCATTCTCCGAATCCACGTGGATACATTCCGATTCGAGGAGCTCCGAAACAGAGCCATCGACGATTTGAGAAATGAATTTGAGCATTGATTCTTCGGAATCTTCATCTAGACCATAATAATTGGGATTGGCAAATAGTCTTCGATAGAGATAGGTTCCTGATAGATACTCAACAATTCCCTGCTTTGAATCAATTGTTCCGGCTGAAATTTC</canonical>
            <polymorphic>TCCGAATTTCTAGAATTTTCAGTCTGAAAAATCGAATACTTCAAAGTTTTTGTTTTTTTTTCAGTATTTTACCTACATTACTAAATTATCAGAATTTCGAAAAGTCTACAATTTTTAGTTTTCAAATTTTTAATTTTCTGATTATTTTGAACATTCAGAAATTCCAAGTTATCCAAATTTTGGAATTTCGAAATTCTGAATTCTTCGATTTCTAGAATACCCTAACTTTTAAATTACTGAATTTCTAGAATTTTCGGTTTTTTAGTGAATTCGGAAAATGTTGAAATTCTGAATATTTCCAAATAACTTGCAACATTTTGAGAAAATTTCTTTAAAAATTAAAAATTTTGTAAACTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCWGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAGGATTTCCGAATTTCTGAAATCCAGAAGTTCTTAAATCTACCCTACCTGCAACTCGGTATTAATCAAATCCTCATTGTGTCGAACCGGAATCTCCGCATACTCCGGCACATCTGTCAACGCCTTCAACATCTGTTCAACAGTACATCCCGAATGCAACGTCTTCACCAAGAATCGAATCGTTTCGTGTTGCAAATAATAAACCGATGCGATTCTACCAAACGCCGTCGGTCCGATGATGTCATTCTCCGAATCCACGTGGATACATTCCGATTCGAGGAGCTCCGAAACAGAGCCATCGACGATTTGAGAAATGAATTTGAGCATTGATTCTTCGGAATCTTCATCTAGACCATAATAATTGGGATTGGCAAATAGTCTTCGATAGAGATAGGTTCCTGATAGATACTCAACAATTCCCTGCTTTGAATCAATTGTTCCGGCTGAAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATCAAAATTACAGATTTTCAGATT</pcr_primer_p1>
		<pcr_primer_p2>GCAGGTAGGGTAGATTTAAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCTGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAGGATTTCCGAATTTCTGAAATCCAGAAGTTCTTAAATCTACCCTACCTGC</canonical_amplicon>
		<polymorphic_amplicon>CTATCAAAATTACAGATTTTCAGATTTTTTCGAATCTTTTTAATTTTCATAATTCTGAAAATAAAAATTTTCAAATTTACGAATTTTAGGTATTTTAAGTTTCTGAATTTTCGAATTCCTGAAAATTCAGGTTTTTCGAAAATTCWGAATTTACAAATTTTCAGCATTTCTATATTTTCGAATTTGCCTTTTTTAGGATTTCCGAATTTCTGAAATCCAGAAGTTCTTAAATCTACCCTACCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25423</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>89888</contig_pos>
        <strand>+</strand>
        <context>TTTCGAGGCA[C/T]TTCTTGTCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAACAATTTCGCGTTTTTTTTCGGTTATTTTAAGACAATTTCGAGGCA</left_flank>
        <right_flank>TTCTTGTCGATTTGGGACTATAATCACGCCATATCACCCGCTTACCTGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCGATTCTCTCGCTTTCTTCCGCTCGATTTTCTCGATCCAGGTGATTGGAATGTTGATGATCTGAAACACAAAATTTTGATTTTTTTTTCCAAAAAAAATTTGTTTTTGGTGATTCATGGACATTATTGCAGATTGAAAATCCAGACAATTTTAGACAGATTACAGATCAAAAAATTAAAAAAAATCCCGAGATCCGAGTTTTCTTTTCTAGGTCATGACCTGGAGTTTTCTAGGTCATGGCCCAATTTTTCCTTGGTCATGACCTACTTTTTCTAAGCCGTGACTTACTTTTTTCTAGTTCATGACCTGCATTTTTCTAGGCCATGACCCAATTTTTTCTAGTCATGACCTAATTTTTTTTAAATTCCAAAATTTGTTCTACCCAGAAACTTTAGAATGTCAAAAGGACTATTTCTGACTATTTCAATACTTGCCATAGTCCATTTTTCAACAATTTCGCGTTTTTTTTCGGTTATTTTAAGACAATTTCGAGGCATTTCTTGTCGATTTGGGACTATAATCACGCCATATCACCCGCTTACCTGTATAAACTGTCTCAATGAGCACTGATTCAACCACATCTGCTTCTCAACACACTTGGCAACTCCCAAAAATGCGTTGGCCGCCTGGCTCCACCCATTTTTAAGAACCATTTCGAACATTGCTCGACACAGACGTCCAGCGTTCTGTTGGACATACAATTGCTCAGACATTAGTGCAGAATTACGAGTTTGAGTTCGAGAGATTAAAGATTGAAGAAGGACATTGACTTTGCCAGCAACACTTGCCAAACCACCGGCACGTACTGGAAGAATGCATCCGAAACTCATTAGCTCTTCCAAATCGTTGATTTCCTCTTCGCGACACTGCAAAAAAATGAGACATTTGGCAACTAAACACTTCAGAACCAGTCATGTCGCACCCTTTATGAAATGTTTAGTTGCCAAATGATCATCAAGCTTACCATTTCGCAACTGGATGTTCTAGAACCAATTTC</canonical>
            <polymorphic>ATCCGATTCTCTCGCTTTCTTCCGCTCGATTTTCTCGATCCAGGTGATTGGAATGTTGATGATCTGAAACACAAAATTTTGATTTTTTTTTCCAAAAAAAATTTGTTTTTGGTGATTCATGGACATTATTGCAGATTGAAAATCCAGACAATTTTAGACAGATTACAGATCAAAAAATTAAAAAAAATCCCGAGATCCGAGTTTTCTTTTCTAGGTCATGACCTGGAGTTTTCTAGGTCATGGCCCAATTTTTCCTTGGTCATGACCTACTTTTTCTAAGCCGTGACTTACTTTTTTCTAGTTCATGACCTGCATTTTTCTAGGCCATGACCCAATTTTTTCTAGTCATGACCTAATTTTTTTTAAATTCCAAAATTTGTTCTACCCAGAAACTTTAGAATGTCAAAAGGACTATTTCTGACTATTTCAATACTTGCCATAGTCCATTTTTCAACAATTTCGCGTTTTTTTTCGGTTATTTTAAGACAATTTCGAGGCAYTTCTTGTCGATTTGGGACTATAATCACGCCATATCACCCGCTTACCTGTATAAACTGTCTCAATGAGCACTGATTCAACCACATCTGCTTCTCAACACACTTGGCAACTCCCAAAAATGCGTTGGCCGCCTGGCTCCACCCATTTTTAAGAACCATTTCGAACATTGCTCGACACAGACGTCCAGCGTTCTGTTGGACATACAATTGCTCAGACATTAGTGCAGAATTACGAGTTTGAGTTCGAGAGATTAAAGATTGAAGAAGGACATTGACTTTGCCAGCAACACTTGCCAAACCACCGGCACGTACTGGAAGAATGCATCCGAAACTCATTAGCTCTTCCAAATCGTTGATTTCCTCTTCGCGACACTGCAAAAAAATGAGACATTTGGCAACTAAACACTTCAGAACCAGTCATGTCGCACCCTTTATGAAATGTTTAGTTGCCAAATGATCATCAAGCTTACCATTTCGCAACTGGATGTTCTAGAACCAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTCAATACTTGCCATAGTCC</pcr_primer_p1>
		<pcr_primer_p2>AATGTTCGAAATGGTTCTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TATTTCAATACTTGCCATAGTCCATTTTTCAACAATTTCGCGTTTTTTTTCGGTTATTTTAAGACAATTTCGAGGCATTTCTTGTCGATTTGGGACTATAATCACGCCATATCACCCGCTTACCTGTATAAACTGTCTCAATGAGCACTGATTCAACCACATCTGCTTCTCAACACACTTGGCAACTCCCAAAAATGCGTTGGCCGCCTGGCTCCACCCATTTTTAAGAACCATTTCGAACATT</canonical_amplicon>
		<polymorphic_amplicon>TATTTCAATACTTGCCATAGTCCATTTTTCAACAATTTCGCGTTTTTTTTCGGTTATTTTAAGACAATTTCGAGGCAYTTCTTGTCGATTTGGGACTATAATCACGCCATATCACCCGCTTACCTGTATAAACTGTCTCAATGAGCACTGATTCAACCACATCTGCTTCTCAACACACTTGGCAACTCCCAAAAATGCGTTGGCCGCCTGGCTCCACCCATTTTTAAGAACCATTTCGAACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25424</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>91170</contig_pos>
        <strand></strand>
        <context>atattagacc[A/G]attccagtca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAGGTATTCGGTTCTGGAAAAAATGGATCATTTTAGTAGATATTAGACC</left_flank>
        <right_flank>ATTCCAGTCAATTTTGGACCATTTTAAGACAGTTTTAGGCCTTTTATAGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCGATTTTCCTCCAAAATGGACATTTCGCAACCGTTCTAAAATGACCGGTTCTGAAACTTCGCGGTTATAATATGGTGCGGTTCTTAAGCGTCGCGGTTTTAAAATGTTGTAGTTTTAAAATATCGCGGTTCTAAAACGTCGCATTTCTAAAACTTTACAGTTCTAAAATGACGCGGTTCTAAAATGTCAAAGATCTGAAAAATTGCTGTTATAAAACGTCGCGGTTCTAAAACATCCCAGTTGCGAAATGACCTTTTTTCGTAGATTTTGAACCTTAATATTCGCGAATTCCGTTGCCATTGAAACCAGACCCAAAACCATATCATCCGGCATAAAAGACGTAAATGCGACCGGTAGTCCAACGCCTTTTTCTGCTTCATTCAACAATTGAATCGTCTCGTATTTCACATAAAAATTCGATGCGATTCGTCCCAAATCCGTCGAATTCAGGTATTCGGTTCTGGAAAAAATGGATCATTTTAGTAGATATTAGACCAATTCCAGTCAATTTTGGACCATTTTAAGACAGTTTTAGGCCTTTTATAGTCAATTTTTGGACTATTATTCGTCATATTTGACCCCTTCTAGTCAATTTTAAACCTCTACTCACGCCATATCATATCGAATCATTTTATTCTGATCCAATTGAATCGCCGCTTCTCGAATTACATTTCCAAAGTGATCACGTAGATTTGGATCTCGTTCTATGGCATTATAAGCGATACCATAAGCCATTGGGTTCTGAAAAATTAGAATTTTGTACTTTTTCGGCTTCGGGACGTTTTAGAACTGACAACTTCGCAACCGCGGTTCTAAAACGTCCGGTTGCGGAATGACCGGTTCTGAAACTACCAAGATCCCCAAACCTCACCTTAATAGCTCTGGTATACATGTAAGTATACGTCAACCATTCGACACCCTCATCAATTGTGGATACTGTACCCAGTGCCACCTCAGCATTCAAATTATCATGAAGACGTGCGTAGAAGTTGGATTC</canonical>
            <polymorphic>AACCGATTTTCCTCCAAAATGGACATTTCGCAACCGTTCTAAAATGACCGGTTCTGAAACTTCGCGGTTATAATATGGTGCGGTTCTTAAGCGTCGCGGTTTTAAAATGTTGTAGTTTTAAAATATCGCGGTTCTAAAACGTCGCATTTCTAAAACTTTACAGTTCTAAAATGACGCGGTTCTAAAATGTCAAAGATCTGAAAAATTGCTGTTATAAAACGTCGCGGTTCTAAAACATCCCAGTTGCGAAATGACCTTTTTTCGTAGATTTTGAACCTTAATATTCGCGAATTCCGTTGCCATTGAAACCAGACCCAAAACCATATCATCCGGCATAAAAGACGTAAATGCGACCGGTAGTCCAACGCCTTTTTCTGCTTCATTCAACAATTGAATCGTCTCGTATTTCACATAAAAATTCGATGCGATTCGTCCCAAATCCGTCGAATTCAGGTATTCGGTTCTGGAAAAAATGGATCATTTTAGTAGATATTAGACCRATTCCAGTCAATTTTGGACCATTTTAAGACAGTTTTAGGCCTTTTATAGTCAATTTTTGGACTATTATTCGTCATATTTGACCCCTTCTAGTCAATTTTAAACCTCTACTCACGCCATATCATATCGAATCATTTTATTCTGATCCAATTGAATCGCCGCTTCTCGAATTACATTTCCAAAGTGATCACGTAGATTTGGATCTCGTTCTATGGCATTATAAGCGATACCATAAGCCATTGGGTTCTGAAAAATTAGAATTTTGTACTTTTTCGGCTTCGGGACGTTTTAGAACTGACAACTTCGCAACCGCGGTTCTAAAACGTCCGGTTGCGGAATGACCGGTTCTGAAACTACCAAGATCCCCAAACCTCACCTTAATAGCTCTGGTATACATGTAAGTATACGTCAACCATTCGACACCCTCATCAATTGTGGATACTGTACCCAGTGCCACCTCAGCATTCAAATTATCATGAAGACGTGCGTAGAAGTTGGATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>203 172 99 86 84 53 53 42 42 38 34 30 28 20 10 6</canonical_bands>
                <polymorphic_bands>203 172 99 86 84 63 53 42 42 38 34 30 28 20 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTCTCGTATTTCACATAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATCAGAATAAAATGATTCGATATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGTCTCGTATTTCACATAAAAATTCGATGCGATTCGTCCCAAATCCGTCGAATTCAGGTATTCGGTTCTGGAAAAAATGGATCATTTTAGTAGATATTAGACCAATTCCAGTCAATTTTGGACCATTTTAAGACAGTTTTAGGCCTTTTATAGTCAATTTTTGGACTATTATTCGTCATATTTGACCCCTTCTAGTCAATTTTAAACCTCTACTCACGCCATATCATATCGAATCATTTTATTCTGAT</canonical_amplicon>
		<polymorphic_amplicon>CGTCTCGTATTTCACATAAAAATTCGATGCGATTCGTCCCAAATCCGTCGAATTCAGGTATTCGGTTCTGGAAAAAATGGATCATTTTAGTAGATATTAGACCRATTCCAGTCAATTTTGGACCATTTTAAGACAGTTTTAGGCCTTTTATAGTCAATTTTTGGACTATTATTCGTCATATTTGACCCCTTCTAGTCAATTTTAAACCTCTACTCACGCCATATCATATCGAATCATTTTATTCTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25425</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>91190</contig_pos>
        <strand></strand>
        <context>aattttggac[C/T]attttaagac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATGGATCATTTTAGTAGATATTAGACCAATTCCAGTCAATTTTGGAC</left_flank>
        <right_flank>ATTTTAAGACAGTTTTAGGCCTTTTATAGTCAATTTTTGGACTATTATTC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGACATTTCGCAACCGTTCTAAAATGACCGGTTCTGAAACTTCGCGGTTATAATATGGTGCGGTTCTTAAGCGTCGCGGTTTTAAAATGTTGTAGTTTTAAAATATCGCGGTTCTAAAACGTCGCATTTCTAAAACTTTACAGTTCTAAAATGACGCGGTTCTAAAATGTCAAAGATCTGAAAAATTGCTGTTATAAAACGTCGCGGTTCTAAAACATCCCAGTTGCGAAATGACCTTTTTTCGTAGATTTTGAACCTTAATATTCGCGAATTCCGTTGCCATTGAAACCAGACCCAAAACCATATCATCCGGCATAAAAGACGTAAATGCGACCGGTAGTCCAACGCCTTTTTCTGCTTCATTCAACAATTGAATCGTCTCGTATTTCACATAAAAATTCGATGCGATTCGTCCCAAATCCGTCGAATTCAGGTATTCGGTTCTGGAAAAAATGGATCATTTTAGTAGATATTAGACCAATTCCAGTCAATTTTGGACCATTTTAAGACAGTTTTAGGCCTTTTATAGTCAATTTTTGGACTATTATTCGTCATATTTGACCCCTTCTAGTCAATTTTAAACCTCTACTCACGCCATATCATATCGAATCATTTTATTCTGATCCAATTGAATCGCCGCTTCTCGAATTACATTTCCAAAGTGATCACGTAGATTTGGATCTCGTTCTATGGCATTATAAGCGATACCATAAGCCATTGGGTTCTGAAAAATTAGAATTTTGTACTTTTTCGGCTTCGGGACGTTTTAGAACTGACAACTTCGCAACCGCGGTTCTAAAACGTCCGGTTGCGGAATGACCGGTTCTGAAACTACCAAGATCCCCAAACCTCACCTTAATAGCTCTGGTATACATGTAAGTATACGTCAACCATTCGACACCCTCATCAATTGTGGATACTGTACCCAGTGCCACCTCAGCATTCAAATTATCATGAAGACGTGCGTAGAAGTTGGATTCAATCGGATTCTGATGGACCA</canonical>
            <polymorphic>GGACATTTCGCAACCGTTCTAAAATGACCGGTTCTGAAACTTCGCGGTTATAATATGGTGCGGTTCTTAAGCGTCGCGGTTTTAAAATGTTGTAGTTTTAAAATATCGCGGTTCTAAAACGTCGCATTTCTAAAACTTTACAGTTCTAAAATGACGCGGTTCTAAAATGTCAAAGATCTGAAAAATTGCTGTTATAAAACGTCGCGGTTCTAAAACATCCCAGTTGCGAAATGACCTTTTTTCGTAGATTTTGAACCTTAATATTCGCGAATTCCGTTGCCATTGAAACCAGACCCAAAACCATATCATCCGGCATAAAAGACGTAAATGCGACCGGTAGTCCAACGCCTTTTTCTGCTTCATTCAACAATTGAATCGTCTCGTATTTCACATAAAAATTCGATGCGATTCGTCCCAAATCCGTCGAATTCAGGTATTCGGTTCTGGAAAAAATGGATCATTTTAGTAGATATTAGACCAATTCCAGTCAATTTTGGACYATTTTAAGACAGTTTTAGGCCTTTTATAGTCAATTTTTGGACTATTATTCGTCATATTTGACCCCTTCTAGTCAATTTTAAACCTCTACTCACGCCATATCATATCGAATCATTTTATTCTGATCCAATTGAATCGCCGCTTCTCGAATTACATTTCCAAAGTGATCACGTAGATTTGGATCTCGTTCTATGGCATTATAAGCGATACCATAAGCCATTGGGTTCTGAAAAATTAGAATTTTGTACTTTTTCGGCTTCGGGACGTTTTAGAACTGACAACTTCGCAACCGCGGTTCTAAAACGTCCGGTTGCGGAATGACCGGTTCTGAAACTACCAAGATCCCCAAACCTCACCTTAATAGCTCTGGTATACATGTAAGTATACGTCAACCATTCGACACCCTCATCAATTGTGGATACTGTACCCAGTGCCACCTCAGCATTCAAATTATCATGAAGACGTGCGTAGAAGTTGGATTCAATCGGATTCTGATGGACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>499 496 5</canonical_bands>
                <polymorphic_bands>995 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>499 496 5</canonical_bands>
                <polymorphic_bands>995 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTCTCGTATTTCACATAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATCAGAATAAAATGATTCGATATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGTCTCGTATTTCACATAAAAATTCGATGCGATTCGTCCCAAATCCGTCGAATTCAGGTATTCGGTTCTGGAAAAAATGGATCATTTTAGTAGATATTAGACCAATTCCAGTCAATTTTGGACCATTTTAAGACAGTTTTAGGCCTTTTATAGTCAATTTTTGGACTATTATTCGTCATATTTGACCCCTTCTAGTCAATTTTAAACCTCTACTCACGCCATATCATATCGAATCATTTTATTCTGAT</canonical_amplicon>
		<polymorphic_amplicon>CGTCTCGTATTTCACATAAAAATTCGATGCGATTCGTCCCAAATCCGTCGAATTCAGGTATTCGGTTCTGGAAAAAATGGATCATTTTAGTAGATATTAGACCAATTCCAGTCAATTTTGGACYATTTTAAGACAGTTTTAGGCCTTTTATAGTCAATTTTTGGACTATTATTCGTCATATTTGACCCCTTCTAGTCAATTTTAAACCTCTACTCACGCCATATCATATCGAATCATTTTATTCTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25426</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>91237</contig_pos>
        <strand></strand>
        <context>ttggactatt[A/C]ttcgtcatat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GACCATTTTAAGACAGTTTTAGGCCTTTTATAGTCAATTTTTGGACTATT</left_flank>
        <right_flank>TTCGTCATATTTGACCCCTTCTAGTCAATTTTAAACCTCTACTCACGCCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATAATATGGTGCGGTTCTTAAGCGTCGCGGTTTTAAAATGTTGTAGTTTTAAAATATCGCGGTTCTAAAACGTCGCATTTCTAAAACTTTACAGTTCTAAAATGACGCGGTTCTAAAATGTCAAAGATCTGAAAAATTGCTGTTATAAAACGTCGCGGTTCTAAAACATCCCAGTTGCGAAATGACCTTTTTTCGTAGATTTTGAACCTTAATATTCGCGAATTCCGTTGCCATTGAAACCAGACCCAAAACCATATCATCCGGCATAAAAGACGTAAATGCGACCGGTAGTCCAACGCCTTTTTCTGCTTCATTCAACAATTGAATCGTCTCGTATTTCACATAAAAATTCGATGCGATTCGTCCCAAATCCGTCGAATTCAGGTATTCGGTTCTGGAAAAAATGGATCATTTTAGTAGATATTAGACCAATTCCAGTCAATTTTGGACCATTTTAAGACAGTTTTAGGCCTTTTATAGTCAATTTTTGGACTATTATTCGTCATATTTGACCCCTTCTAGTCAATTTTAAACCTCTACTCACGCCATATCATATCGAATCATTTTATTCTGATCCAATTGAATCGCCGCTTCTCGAATTACATTTCCAAAGTGATCACGTAGATTTGGATCTCGTTCTATGGCATTATAAGCGATACCATAAGCCATTGGGTTCTGAAAAATTAGAATTTTGTACTTTTTCGGCTTCGGGACGTTTTAGAACTGACAACTTCGCAACCGCGGTTCTAAAACGTCCGGTTGCGGAATGACCGGTTCTGAAACTACCAAGATCCCCAAACCTCACCTTAATAGCTCTGGTATACATGTAAGTATACGTCAACCATTCGACACCCTCATCAATTGTGGATACTGTACCCAGTGCCACCTCAGCATTCAAATTATCATGAAGACGTGCGTAGAAGTTGGATTCAATCGGATTCTGATGGACCAGCATCGTCAGATATTTATCAATTTTATCTCTCGTCGTTATGATGATT</canonical>
            <polymorphic>TTATAATATGGTGCGGTTCTTAAGCGTCGCGGTTTTAAAATGTTGTAGTTTTAAAATATCGCGGTTCTAAAACGTCGCATTTCTAAAACTTTACAGTTCTAAAATGACGCGGTTCTAAAATGTCAAAGATCTGAAAAATTGCTGTTATAAAACGTCGCGGTTCTAAAACATCCCAGTTGCGAAATGACCTTTTTTCGTAGATTTTGAACCTTAATATTCGCGAATTCCGTTGCCATTGAAACCAGACCCAAAACCATATCATCCGGCATAAAAGACGTAAATGCGACCGGTAGTCCAACGCCTTTTTCTGCTTCATTCAACAATTGAATCGTCTCGTATTTCACATAAAAATTCGATGCGATTCGTCCCAAATCCGTCGAATTCAGGTATTCGGTTCTGGAAAAAATGGATCATTTTAGTAGATATTAGACCAATTCCAGTCAATTTTGGACCATTTTAAGACAGTTTTAGGCCTTTTATAGTCAATTTTTGGACTATTMTTCGTCATATTTGACCCCTTCTAGTCAATTTTAAACCTCTACTCACGCCATATCATATCGAATCATTTTATTCTGATCCAATTGAATCGCCGCTTCTCGAATTACATTTCCAAAGTGATCACGTAGATTTGGATCTCGTTCTATGGCATTATAAGCGATACCATAAGCCATTGGGTTCTGAAAAATTAGAATTTTGTACTTTTTCGGCTTCGGGACGTTTTAGAACTGACAACTTCGCAACCGCGGTTCTAAAACGTCCGGTTGCGGAATGACCGGTTCTGAAACTACCAAGATCCCCAAACCTCACCTTAATAGCTCTGGTATACATGTAAGTATACGTCAACCATTCGACACCCTCATCAATTGTGGATACTGTACCCAGTGCCACCTCAGCATTCAAATTATCATGAAGACGTGCGTAGAAGTTGGATTCAATCGGATTCTGATGGACCAGCATCGTCAGATATTTATCAATTTTATCTCTCGTCGTTATGATGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTCTCGTATTTCACATAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATCAGAATAAAATGATTCGATATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGTCTCGTATTTCACATAAAAATTCGATGCGATTCGTCCCAAATCCGTCGAATTCAGGTATTCGGTTCTGGAAAAAATGGATCATTTTAGTAGATATTAGACCAATTCCAGTCAATTTTGGACCATTTTAAGACAGTTTTAGGCCTTTTATAGTCAATTTTTGGACTATTATTCGTCATATTTGACCCCTTCTAGTCAATTTTAAACCTCTACTCACGCCATATCATATCGAATCATTTTATTCTGAT</canonical_amplicon>
		<polymorphic_amplicon>CGTCTCGTATTTCACATAAAAATTCGATGCGATTCGTCCCAAATCCGTCGAATTCAGGTATTCGGTTCTGGAAAAAATGGATCATTTTAGTAGATATTAGACCAATTCCAGTCAATTTTGGACCATTTTAAGACAGTTTTAGGCCTTTTATAGTCAATTTTTGGACTATTMTTCGTCATATTTGACCCCTTCTAGTCAATTTTAAACCTCTACTCACGCCATATCATATCGAATCATTTTATTCTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25427</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>91255</contig_pos>
        <strand></strand>
        <context>tatttgaccc[C/T]ttytagtcaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAGGCCTTTTATAGTCAATTTTTGGACTATTATTCGTCATATTTGACCC</left_flank>
        <right_flank>TTCTAGTCAATTTTAAACCTCTACTCACGCCATATCATATCGAATCATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTAAGCGTCGCGGTTTTAAAATGTTGTAGTTTTAAAATATCGCGGTTCTAAAACGTCGCATTTCTAAAACTTTACAGTTCTAAAATGACGCGGTTCTAAAATGTCAAAGATCTGAAAAATTGCTGTTATAAAACGTCGCGGTTCTAAAACATCCCAGTTGCGAAATGACCTTTTTTCGTAGATTTTGAACCTTAATATTCGCGAATTCCGTTGCCATTGAAACCAGACCCAAAACCATATCATCCGGCATAAAAGACGTAAATGCGACCGGTAGTCCAACGCCTTTTTCTGCTTCATTCAACAATTGAATCGTCTCGTATTTCACATAAAAATTCGATGCGATTCGTCCCAAATCCGTCGAATTCAGGTATTCGGTTCTGGAAAAAATGGATCATTTTAGTAGATATTAGACCAATTCCAGTCAATTTTGGACCATTTTAAGACAGTTTTAGGCCTTTTATAGTCAATTTTTGGACTATTATTCGTCATATTTGACCCCTTCTAGTCAATTTTAAACCTCTACTCACGCCATATCATATCGAATCATTTTATTCTGATCCAATTGAATCGCCGCTTCTCGAATTACATTTCCAAAGTGATCACGTAGATTTGGATCTCGTTCTATGGCATTATAAGCGATACCATAAGCCATTGGGTTCTGAAAAATTAGAATTTTGTACTTTTTCGGCTTCGGGACGTTTTAGAACTGACAACTTCGCAACCGCGGTTCTAAAACGTCCGGTTGCGGAATGACCGGTTCTGAAACTACCAAGATCCCCAAACCTCACCTTAATAGCTCTGGTATACATGTAAGTATACGTCAACCATTCGACACCCTCATCAATTGTGGATACTGTACCCAGTGCCACCTCAGCATTCAAATTATCATGAAGACGTGCGTAGAAGTTGGATTCAATCGGATTCTGATGGACCAGCATCGTCAGATATTTATCAATTTTATCTCTCGTCGTTATGATGATTCCATGTCCCTCGTTTTCG</canonical>
            <polymorphic>CTTAAGCGTCGCGGTTTTAAAATGTTGTAGTTTTAAAATATCGCGGTTCTAAAACGTCGCATTTCTAAAACTTTACAGTTCTAAAATGACGCGGTTCTAAAATGTCAAAGATCTGAAAAATTGCTGTTATAAAACGTCGCGGTTCTAAAACATCCCAGTTGCGAAATGACCTTTTTTCGTAGATTTTGAACCTTAATATTCGCGAATTCCGTTGCCATTGAAACCAGACCCAAAACCATATCATCCGGCATAAAAGACGTAAATGCGACCGGTAGTCCAACGCCTTTTTCTGCTTCATTCAACAATTGAATCGTCTCGTATTTCACATAAAAATTCGATGCGATTCGTCCCAAATCCGTCGAATTCAGGTATTCGGTTCTGGAAAAAATGGATCATTTTAGTAGATATTAGACCAATTCCAGTCAATTTTGGACCATTTTAAGACAGTTTTAGGCCTTTTATAGTCAATTTTTGGACTATTATTCGTCATATTTGACCCYTTCTAGTCAATTTTAAACCTCTACTCACGCCATATCATATCGAATCATTTTATTCTGATCCAATTGAATCGCCGCTTCTCGAATTACATTTCCAAAGTGATCACGTAGATTTGGATCTCGTTCTATGGCATTATAAGCGATACCATAAGCCATTGGGTTCTGAAAAATTAGAATTTTGTACTTTTTCGGCTTCGGGACGTTTTAGAACTGACAACTTCGCAACCGCGGTTCTAAAACGTCCGGTTGCGGAATGACCGGTTCTGAAACTACCAAGATCCCCAAACCTCACCTTAATAGCTCTGGTATACATGTAAGTATACGTCAACCATTCGACACCCTCATCAATTGTGGATACTGTACCCAGTGCCACCTCAGCATTCAAATTATCATGAAGACGTGCGTAGAAGTTGGATTCAATCGGATTCTGATGGACCAGCATCGTCAGATATTTATCAATTTTATCTCTCGTCGTTATGATGATTCCATGTCCCTCGTTTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTCTCGTATTTCACATAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATCAGAATAAAATGATTCGATATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGTCTCGTATTTCACATAAAAATTCGATGCGATTCGTCCCAAATCCGTCGAATTCAGGTATTCGGTTCTGGAAAAAATGGATCATTTTAGTAGATATTAGACCAATTCCAGTCAATTTTGGACCATTTTAAGACAGTTTTAGGCCTTTTATAGTCAATTTTTGGACTATTATTCGTCATATTTGACCCCTTCTAGTCAATTTTAAACCTCTACTCACGCCATATCATATCGAATCATTTTATTCTGAT</canonical_amplicon>
		<polymorphic_amplicon>CGTCTCGTATTTCACATAAAAATTCGATGCGATTCGTCCCAAATCCGTCGAATTCAGGTATTCGGTTCTGGAAAAAATGGATCATTTTAGTAGATATTAGACCAATTCCAGTCAATTTTGGACCATTTTAAGACAGTTTTAGGCCTTTTATAGTCAATTTTTGGACTATTATTCGTCATATTTGACCCYTTCTAGTCAATTTTAAACCTCTACTCACGCCATATCATATCGAATCATTTTATTCTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25428</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>91258</contig_pos>
        <strand></strand>
        <context>ttgacccytt[C/T]tagtcaattt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCCTTTTATAGTCAATTTTTGGACTATTATTCGTCATATTTGACCCCTT</left_flank>
        <right_flank>TAGTCAATTTTAAACCTCTACTCACGCCATATCATATCGAATCATTTTAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCGTCGCGGTTTTAAAATGTTGTAGTTTTAAAATATCGCGGTTCTAAAACGTCGCATTTCTAAAACTTTACAGTTCTAAAATGACGCGGTTCTAAAATGTCAAAGATCTGAAAAATTGCTGTTATAAAACGTCGCGGTTCTAAAACATCCCAGTTGCGAAATGACCTTTTTTCGTAGATTTTGAACCTTAATATTCGCGAATTCCGTTGCCATTGAAACCAGACCCAAAACCATATCATCCGGCATAAAAGACGTAAATGCGACCGGTAGTCCAACGCCTTTTTCTGCTTCATTCAACAATTGAATCGTCTCGTATTTCACATAAAAATTCGATGCGATTCGTCCCAAATCCGTCGAATTCAGGTATTCGGTTCTGGAAAAAATGGATCATTTTAGTAGATATTAGACCAATTCCAGTCAATTTTGGACCATTTTAAGACAGTTTTAGGCCTTTTATAGTCAATTTTTGGACTATTATTCGTCATATTTGACCCCTTCTAGTCAATTTTAAACCTCTACTCACGCCATATCATATCGAATCATTTTATTCTGATCCAATTGAATCGCCGCTTCTCGAATTACATTTCCAAAGTGATCACGTAGATTTGGATCTCGTTCTATGGCATTATAAGCGATACCATAAGCCATTGGGTTCTGAAAAATTAGAATTTTGTACTTTTTCGGCTTCGGGACGTTTTAGAACTGACAACTTCGCAACCGCGGTTCTAAAACGTCCGGTTGCGGAATGACCGGTTCTGAAACTACCAAGATCCCCAAACCTCACCTTAATAGCTCTGGTATACATGTAAGTATACGTCAACCATTCGACACCCTCATCAATTGTGGATACTGTACCCAGTGCCACCTCAGCATTCAAATTATCATGAAGACGTGCGTAGAAGTTGGATTCAATCGGATTCTGATGGACCAGCATCGTCAGATATTTATCAATTTTATCTCTCGTCGTTATGATGATTCCATGTCCCTCGTTTTCGAAT</canonical>
            <polymorphic>AAGCGTCGCGGTTTTAAAATGTTGTAGTTTTAAAATATCGCGGTTCTAAAACGTCGCATTTCTAAAACTTTACAGTTCTAAAATGACGCGGTTCTAAAATGTCAAAGATCTGAAAAATTGCTGTTATAAAACGTCGCGGTTCTAAAACATCCCAGTTGCGAAATGACCTTTTTTCGTAGATTTTGAACCTTAATATTCGCGAATTCCGTTGCCATTGAAACCAGACCCAAAACCATATCATCCGGCATAAAAGACGTAAATGCGACCGGTAGTCCAACGCCTTTTTCTGCTTCATTCAACAATTGAATCGTCTCGTATTTCACATAAAAATTCGATGCGATTCGTCCCAAATCCGTCGAATTCAGGTATTCGGTTCTGGAAAAAATGGATCATTTTAGTAGATATTAGACCAATTCCAGTCAATTTTGGACCATTTTAAGACAGTTTTAGGCCTTTTATAGTCAATTTTTGGACTATTATTCGTCATATTTGACCCCTTYTAGTCAATTTTAAACCTCTACTCACGCCATATCATATCGAATCATTTTATTCTGATCCAATTGAATCGCCGCTTCTCGAATTACATTTCCAAAGTGATCACGTAGATTTGGATCTCGTTCTATGGCATTATAAGCGATACCATAAGCCATTGGGTTCTGAAAAATTAGAATTTTGTACTTTTTCGGCTTCGGGACGTTTTAGAACTGACAACTTCGCAACCGCGGTTCTAAAACGTCCGGTTGCGGAATGACCGGTTCTGAAACTACCAAGATCCCCAAACCTCACCTTAATAGCTCTGGTATACATGTAAGTATACGTCAACCATTCGACACCCTCATCAATTGTGGATACTGTACCCAGTGCCACCTCAGCATTCAAATTATCATGAAGACGTGCGTAGAAGTTGGATTCAATCGGATTCTGATGGACCAGCATCGTCAGATATTTATCAATTTTATCTCTCGTCGTTATGATGATTCCATGTCCCTCGTTTTCGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTCTCGTATTTCACATAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATCAGAATAAAATGATTCGATATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGTCTCGTATTTCACATAAAAATTCGATGCGATTCGTCCCAAATCCGTCGAATTCAGGTATTCGGTTCTGGAAAAAATGGATCATTTTAGTAGATATTAGACCAATTCCAGTCAATTTTGGACCATTTTAAGACAGTTTTAGGCCTTTTATAGTCAATTTTTGGACTATTATTCGTCATATTTGACCCCTTCTAGTCAATTTTAAACCTCTACTCACGCCATATCATATCGAATCATTTTATTCTGAT</canonical_amplicon>
		<polymorphic_amplicon>CGTCTCGTATTTCACATAAAAATTCGATGCGATTCGTCCCAAATCCGTCGAATTCAGGTATTCGGTTCTGGAAAAAATGGATCATTTTAGTAGATATTAGACCAATTCCAGTCAATTTTGGACCATTTTAAGACAGTTTTAGGCCTTTTATAGTCAATTTTTGGACTATTATTCGTCATATTTGACCCCTTYTAGTCAATTTTAAACCTCTACTCACGCCATATCATATCGAATCATTTTATTCTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25429</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>93621</contig_pos>
        <strand></strand>
        <context>cagaaatttg[A/G]aaaatctcga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTG</left_flank>
        <right_flank>AAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTCGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAACTTTTTAAAAACTCCCACTTCTGTGTCAACGGCACCGGTCGGAATCTGCCATCGAAAAAGAACAGTCCCTTATAAGGATTAACTCTCAAAAATCGAGCGACATCAATATAATTGGGCAACGTAGCTGATAATCCAACAATTCGAATTCCAGACTGTGACATTTCAACCTGTCGAAGTGTTCTCGCAACCAATGTCTCAATAACTGGACCTCTTTCGTCGTGTAGCAAATGAACTTCATCGATGATTAGTAGGCGGACTGTGTTGATTATGGAGTTATCACTGGATGATTTTCGAGTGATTACATCCCATTTCTCGGGTGTTAACACTAGCATCTGGGTGTCGGCCACTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTCTAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGAAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTAAAATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAAGTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAAT</canonical>
            <polymorphic>TTTAACTTTTTAAAAACTCCCACTTCTGTGTCAACGGCACCGGTCGGAATCTGCCATCGAAAAAGAACAGTCCCTTATAAGGATTAACTCTCAAAAATCGAGCGACATCAATATAATTGGGCAACGTAGCTGATAATCCAACAATTCGAATTCCAGACTGTGACATTTCAACCTGTCGAAGTGTTCTCGCAACCAATGTCTCAATAACTGGACCTCTTTCGTCGTGTAGCAAATGAACTTCATCGATGATTAGTAGGCGGACTGTGTTGATTATGGAGTTATCACTGGATGATTTTCGAGTGATTACATCCCATTTCTCGGGTGTTAACACTAGCATCTGGGTGTCGGCCACTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGRAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTCTAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGAAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTAAAATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAAGTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCATTTCGAGACAGTTGAGT</pcr_primer_p1>
		<pcr_primer_p2>GATTATCTATATTGCACCTATGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>833</pcr_amplicon_size>
		<canonical_amplicon>CTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGA</canonical_amplicon>
		<polymorphic_amplicon>CTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGRAAAATCTCGAAATTTCAGAAATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25430</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>93645</contig_pos>
        <strand></strand>
        <context>ttcagaaatt[G/C]agaaattcwa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATT</left_flank>
        <right_flank>AGAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAG</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGTGTCAACGGCACCGGTCGGAATCTGCCATCGAAAAAGAACAGTCCCTTATAAGGATTAACTCTCAAAAATCGAGCGACATCAATATAATTGGGCAACGTAGCTGATAATCCAACAATTCGAATTCCAGACTGTGACATTTCAACCTGTCGAAGTGTTCTCGCAACCAATGTCTCAATAACTGGACCTCTTTCGTCGTGTAGCAAATGAACTTCATCGATGATTAGTAGGCGGACTGTGTTGATTATGGAGTTATCACTGGATGATTTTCGAGTGATTACATCCCATTTCTCGGGTGTTAACACTAGCATCTGGGTGTCGGCCACTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTCTAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGAAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTAAAATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAAGTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAATGTTGGATATCTGGAATTTTCGAGA</canonical>
            <polymorphic>TCTGTGTCAACGGCACCGGTCGGAATCTGCCATCGAAAAAGAACAGTCCCTTATAAGGATTAACTCTCAAAAATCGAGCGACATCAATATAATTGGGCAACGTAGCTGATAATCCAACAATTCGAATTCCAGACTGTGACATTTCAACCTGTCGAAGTGTTCTCGCAACCAATGTCTCAATAACTGGACCTCTTTCGTCGTGTAGCAAATGAACTTCATCGATGATTAGTAGGCGGACTGTGTTGATTATGGAGTTATCACTGGATGATTTTCGAGTGATTACATCCCATTTCTCGGGTGTTAACACTAGCATCTGGGTGTCGGCCACTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTSAGAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTCTAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGAAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTAAAATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAAGTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAATGTTGGATATCTGGAATTTTCGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCATTTCGAGACAGTTGAGT</pcr_primer_p1>
		<pcr_primer_p2>GATTATCTATATTGCACCTATGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>833</pcr_amplicon_size>
		<canonical_amplicon>CTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTCG</canonical_amplicon>
		<polymorphic_amplicon>CTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTSAGAAATTCTAAAATTCGGTAACTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25431</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>93654</contig_pos>
        <strand></strand>
        <context>tsagaaattc[T/A]aaaattcggt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTC</left_flank>
        <right_flank>AAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGGCACCGGTCGGAATCTGCCATCGAAAAAGAACAGTCCCTTATAAGGATTAACTCTCAAAAATCGAGCGACATCAATATAATTGGGCAACGTAGCTGATAATCCAACAATTCGAATTCCAGACTGTGACATTTCAACCTGTCGAAGTGTTCTCGCAACCAATGTCTCAATAACTGGACCTCTTTCGTCGTGTAGCAAATGAACTTCATCGATGATTAGTAGGCGGACTGTGTTGATTATGGAGTTATCACTGGATGATTTTCGAGTGATTACATCCCATTTCTCGGGTGTTAACACTAGCATCTGGGTGTCGGCCACTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTCTAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGAAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTAAAATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAAGTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAATGTTGGATATCTGGAATTTTCGAGATTTTGGGAT</canonical>
            <polymorphic>ACGGCACCGGTCGGAATCTGCCATCGAAAAAGAACAGTCCCTTATAAGGATTAACTCTCAAAAATCGAGCGACATCAATATAATTGGGCAACGTAGCTGATAATCCAACAATTCGAATTCCAGACTGTGACATTTCAACCTGTCGAAGTGTTCTCGCAACCAATGTCTCAATAACTGGACCTCTTTCGTCGTGTAGCAAATGAACTTCATCGATGATTAGTAGGCGGACTGTGTTGATTATGGAGTTATCACTGGATGATTTTCGAGTGATTACATCCCATTTCTCGGGTGTTAACACTAGCATCTGGGTGTCGGCCACTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCWAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTCTAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGAAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTAAAATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAAGTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAATGTTGGATATCTGGAATTTTCGAGATTTTGGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCATTTCGAGACAGTTGAGT</pcr_primer_p1>
		<pcr_primer_p2>GATTATCTATATTGCACCTATGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>833</pcr_amplicon_size>
		<canonical_amplicon>CTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTCGAAAGTTCAG</canonical_amplicon>
		<polymorphic_amplicon>CTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCWAAAATTCGGTAACTCGAAAGTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25432</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>93669</contig_pos>
        <strand></strand>
        <context>ttcggtaact[C/A]gaaagttcag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACT</left_flank>
        <right_flank>GAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTGCCATCGAAAAAGAACAGTCCCTTATAAGGATTAACTCTCAAAAATCGAGCGACATCAATATAATTGGGCAACGTAGCTGATAATCCAACAATTCGAATTCCAGACTGTGACATTTCAACCTGTCGAAGTGTTCTCGCAACCAATGTCTCAATAACTGGACCTCTTTCGTCGTGTAGCAAATGAACTTCATCGATGATTAGTAGGCGGACTGTGTTGATTATGGAGTTATCACTGGATGATTTTCGAGTGATTACATCCCATTTCTCGGGTGTTAACACTAGCATCTGGGTGTCGGCCACTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTCTAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGAAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTAAAATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAAGTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAATGTTGGATATCTGGAATTTTCGAGATTTTGGGATTCTGAATAATTCCCG</canonical>
            <polymorphic>ATCTGCCATCGAAAAAGAACAGTCCCTTATAAGGATTAACTCTCAAAAATCGAGCGACATCAATATAATTGGGCAACGTAGCTGATAATCCAACAATTCGAATTCCAGACTGTGACATTTCAACCTGTCGAAGTGTTCTCGCAACCAATGTCTCAATAACTGGACCTCTTTCGTCGTGTAGCAAATGAACTTCATCGATGATTAGTAGGCGGACTGTGTTGATTATGGAGTTATCACTGGATGATTTTCGAGTGATTACATCCCATTTCTCGGGTGTTAACACTAGCATCTGGGTGTCGGCCACTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTMGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTCTAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGAAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTAAAATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAAGTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAATGTTGGATATCTGGAATTTTCGAGATTTTGGGATTCTGAATAATTCCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>176 128 76 73 67 63 59 53 52 48 41 40 40 30 28 16 10</canonical_bands>
                <polymorphic_bands>216 128 76 73 67 63 59 53 52 48 41 40 30 28 16 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCATTTCGAGACAGTTGAGT</pcr_primer_p1>
		<pcr_primer_p2>GATTATCTATATTGCACCTATGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>833</pcr_amplicon_size>
		<canonical_amplicon>CTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCA</canonical_amplicon>
		<polymorphic_amplicon>CTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTMGAAAGTTCAGAAATTCAGAATTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25433</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>93722</contig_pos>
        <strand></strand>
        <context>agcttcagaa[A/G]ttctgaattt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAA</left_flank>
        <right_flank>TTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATTTT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGACATCAATATAATTGGGCAACGTAGCTGATAATCCAACAATTCGAATTCCAGACTGTGACATTTCAACCTGTCGAAGTGTTCTCGCAACCAATGTCTCAATAACTGGACCTCTTTCGTCGTGTAGCAAATGAACTTCATCGATGATTAGTAGGCGGACTGTGTTGATTATGGAGTTATCACTGGATGATTTTCGAGTGATTACATCCCATTTCTCGGGTGTTAACACTAGCATCTGGGTGTCGGCCACTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTCTAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGAAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTAAAATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAAGTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAATGTTGGATATCTGGAATTTTCGAGATTTTGGGATTCTGAATAATTCCCGAATTTTGAATATGTTCAGCATCTTCAGGATTTTCCAGAATCTTCTTCTTACCT</canonical>
            <polymorphic>GCGACATCAATATAATTGGGCAACGTAGCTGATAATCCAACAATTCGAATTCCAGACTGTGACATTTCAACCTGTCGAAGTGTTCTCGCAACCAATGTCTCAATAACTGGACCTCTTTCGTCGTGTAGCAAATGAACTTCATCGATGATTAGTAGGCGGACTGTGTTGATTATGGAGTTATCACTGGATGATTTTCGAGTGATTACATCCCATTTCTCGGGTGTTAACACTAGCATCTGGGTGTCGGCCACTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAARTTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTCTAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGAAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTAAAATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAAGTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAATGTTGGATATCTGGAATTTTCGAGATTTTGGGATTCTGAATAATTCCCGAATTTTGAATATGTTCAGCATCTTCAGGATTTTCCAGAATCTTCTTCTTACCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>280 53 50 47 46 35 34 33 32 32 24 24 24 23 20 17 17 17 16 15 11 9 9 9 9 8 8 8 8 8 8 8 8 8 7 7 7 7 7 7</canonical_bands>
                <polymorphic_bands>280 53 50 47 46 40 35 34 32 32 24 24 24 23 20 17 17 17 16 15 11 9 9 9 9 8 8 8 8 8 8 8 8 8 7 7 7 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>280 53 50 46 34 33 32 32 28 27 24 24 23 20 17 16 16 15 13 11 9 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7 7 7 7 6</canonical_bands>
                <polymorphic_bands>280 53 50 46 40 34 32 32 28 27 24 24 23 20 17 16 16 15 13 11 9 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7 7 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCATTTCGAGACAGTTGAGT</pcr_primer_p1>
		<pcr_primer_p2>GATTATCTATATTGCACCTATGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>833</pcr_amplicon_size>
		<canonical_amplicon>CTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGACTT</canonical_amplicon>
		<polymorphic_amplicon>CTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAARTTCTGAATTTCCAAATCTCAGACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25434</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>93745</contig_pos>
        <strand></strand>
        <context>aaatctcaga[C/A]tttgagaatc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGA</left_flank>
        <right_flank>TTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTAGCTGATAATCCAACAATTCGAATTCCAGACTGTGACATTTCAACCTGTCGAAGTGTTCTCGCAACCAATGTCTCAATAACTGGACCTCTTTCGTCGTGTAGCAAATGAACTTCATCGATGATTAGTAGGCGGACTGTGTTGATTATGGAGTTATCACTGGATGATTTTCGAGTGATTACATCCCATTTCTCGGGTGTTAACACTAGCATCTGGGTGTCGGCCACTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTCTAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGAAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTAAAATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAAGTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAATGTTGGATATCTGGAATTTTCGAGATTTTGGGATTCTGAATAATTCCCGAATTTTGAATATGTTCAGCATCTTCAGGATTTTCCAGAATCTTCTTCTTACCTTCAATCCCAACGGTGCCAATCTC</canonical>
            <polymorphic>CGTAGCTGATAATCCAACAATTCGAATTCCAGACTGTGACATTTCAACCTGTCGAAGTGTTCTCGCAACCAATGTCTCAATAACTGGACCTCTTTCGTCGTGTAGCAAATGAACTTCATCGATGATTAGTAGGCGGACTGTGTTGATTATGGAGTTATCACTGGATGATTTTCGAGTGATTACATCCCATTTCTCGGGTGTTAACACTAGCATCTGGGTGTCGGCCACTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGAMTTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTCTAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGAAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTAAAATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAAGTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAATGTTGGATATCTGGAATTTTCGAGATTTTGGGATTCTGAATAATTCCCGAATTTTGAATATGTTCAGCATCTTCAGGATTTTCCAGAATCTTCTTCTTACCTTCAATCCCAACGGTGCCAATCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCATTTCGAGACAGTTGAGT</pcr_primer_p1>
		<pcr_primer_p2>GATTATCTATATTGCACCTATGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>833</pcr_amplicon_size>
		<canonical_amplicon>CTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATT</canonical_amplicon>
		<polymorphic_amplicon>CTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGAMTTTGAGAATCTCAGAATTTCAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25435</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>93823</contig_pos>
        <strand></strand>
        <context>cagaaattga[G/A]aaattcwaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGA</left_flank>
        <right_flank>AAATTCTAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAACTGGACCTCTTTCGTCGTGTAGCAAATGAACTTCATCGATGATTAGTAGGCGGACTGTGTTGATTATGGAGTTATCACTGGATGATTTTCGAGTGATTACATCCCATTTCTCGGGTGTTAACACTAGCATCTGGGTGTCGGCCACTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTCTAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGAAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTAAAATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAAGTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAATGTTGGATATCTGGAATTTTCGAGATTTTGGGATTCTGAATAATTCCCGAATTTTGAATATGTTCAGCATCTTCAGGATTTTCCAGAATCTTCTTCTTACCTTCAATCCCAACGGTGCCAATCTCTTCCCGAACGATTCGGTCATTTCAGTTGCCAACGCTTTCATAGGTGCAATATAGATAATCTTAAAGTCGTCCTTCATA</canonical>
            <polymorphic>AATAACTGGACCTCTTTCGTCGTGTAGCAAATGAACTTCATCGATGATTAGTAGGCGGACTGTGTTGATTATGGAGTTATCACTGGATGATTTTCGAGTGATTACATCCCATTTCTCGGGTGTTAACACTAGCATCTGGGTGTCGGCCACTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGARAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTCTAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGAAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTAAAATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAAGTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAATGTTGGATATCTGGAATTTTCGAGATTTTGGGATTCTGAATAATTCCCGAATTTTGAATATGTTCAGCATCTTCAGGATTTTCCAGAATCTTCTTCTTACCTTCAATCCCAACGGTGCCAATCTCTTCCCGAACGATTCGGTCATTTCAGTTGCCAACGCTTTCATAGGTGCAATATAGATAATCTTAAAGTCGTCCTTCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCATTTCGAGACAGTTGAGT</pcr_primer_p1>
		<pcr_primer_p2>GATTATCTATATTGCACCTATGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>833</pcr_amplicon_size>
		<canonical_amplicon>CTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGARAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTCTAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGAAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTAAAATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAAGTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAATGTTGGATATCTGGAATTTTCGAGATTTTGGGATTCTGAATAATTCCCGAATTTTGAATATGTTCAGCATCTTCAGGATTTTCCAGAATCTTCTTCTTACCTTCAATCCCAACGGTGCCAATCTCTTCCCGAACGATTCGGTCATTTCAGTTGCCAACGCTTTCATAGGTGCAATATAGATAATC</canonical_amplicon>
		<polymorphic_amplicon>CTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGARAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTCTAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGAAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTAAAATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAAGTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAATGTTGGATATCTGGAATTTTCGAGATTTTGGGATTCTGAATAATTCCCGAATTTTGAATATGTTCAGCATCTTCAGGATTTTCCAGAATCTTCTTCTTACCTTCAATCCCAACGGTGCCAATCTCTTCCCGAACGATTCGGTCATTTCAGTTGCCAACGCTTTCATAGGTGCAATATAGATAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25436</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>93830</contig_pos>
        <strand></strand>
        <context>tgaraaattc[T/A]aaaatttgga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTC</left_flank>
        <right_flank>AAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGAAAATTC</right_flank>
        <qual_score>49</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGACCTCTTTCGTCGTGTAGCAAATGAACTTCATCGATGATTAGTAGGCGGACTGTGTTGATTATGGAGTTATCACTGGATGATTTTCGAGTGATTACATCCCATTTCTCGGGTGTTAACACTAGCATCTGGGTGTCGGCCACTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTCTAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGAAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTAAAATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAAGTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAATGTTGGATATCTGGAATTTTCGAGATTTTGGGATTCTGAATAATTCCCGAATTTTGAATATGTTCAGCATCTTCAGGATTTTCCAGAATCTTCTTCTTACCTTCAATCCCAACGGTGCCAATCTCTTCCCGAACGATTCGGTCATTTCAGTTGCCAACGCTTTCATAGGTGCAATATAGATAATCTTAAAGTCGTCCTTCATAATTTCTC</canonical>
            <polymorphic>GGACCTCTTTCGTCGTGTAGCAAATGAACTTCATCGATGATTAGTAGGCGGACTGTGTTGATTATGGAGTTATCACTGGATGATTTTCGAGTGATTACATCCCATTTCTCGGGTGTTAACACTAGCATCTGGGTGTCGGCCACTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTCWAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGAAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTAAAATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAAGTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAATGTTGGATATCTGGAATTTTCGAGATTTTGGGATTCTGAATAATTCCCGAATTTTGAATATGTTCAGCATCTTCAGGATTTTCCAGAATCTTCTTCTTACCTTCAATCCCAACGGTGCCAATCTCTTCCCGAACGATTCGGTCATTTCAGTTGCCAACGCTTTCATAGGTGCAATATAGATAATCTTAAAGTCGTCCTTCATAATTTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCATTTCGAGACAGTTGAGT</pcr_primer_p1>
		<pcr_primer_p2>GATTATCTATATTGCACCTATGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>833</pcr_amplicon_size>
		<canonical_amplicon>CTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTCTAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGAAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTAAAATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAAGTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAATGTTGGATATCTGGAATTTTCGAGATTTTGGGATTCTGAATAATTCCCGAATTTTGAATATGTTCAGCATCTTCAGGATTTTCCAGAATCTTCTTCTTACCTTCAATCCCAACGGTGCCAATCTCTTCCCGAACGATTCGGTCATTTCAGTTGCCAACGCTTTCATAGGTGCAATATAGATAATC</canonical_amplicon>
		<polymorphic_amplicon>CTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTCWAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGAAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTAAAATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAAGTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAATGTTGGATATCTGGAATTTTCGAGATTTTGGGATTCTGAATAATTCCCGAATTTTGAATATGTTCAGCATCTTCAGGATTTTCCAGAATCTTCTTCTTACCTTCAATCCCAACGGTGCCAATCTCTTCCCGAACGATTCGGTCATTTCAGTTGCCAACGCTTTCATAGGTGCAATATAGATAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25437</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>93874</contig_pos>
        <strand></strand>
        <context>aaaatcagag[A/G]aaattcggaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTCTAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAG</left_flank>
        <right_flank>AAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTAAAATTCGAT</right_flank>
        <qual_score>50</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGCGGACTGTGTTGATTATGGAGTTATCACTGGATGATTTTCGAGTGATTACATCCCATTTCTCGGGTGTTAACACTAGCATCTGGGTGTCGGCCACTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTCTAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGAAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTAAAATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAAGTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAATGTTGGATATCTGGAATTTTCGAGATTTTGGGATTCTGAATAATTCCCGAATTTTGAATATGTTCAGCATCTTCAGGATTTTCCAGAATCTTCTTCTTACCTTCAATCCCAACGGTGCCAATCTCTTCCCGAACGATTCGGTCATTTCAGTTGCCAACGCTTTCATAGGTGCAATATAGATAATCTTAAAGTCGTCCTTCATAATTTCTCCTCTCGAATTCTGATGCTCATGAATTGTATTCAAAATTGTCAAC</canonical>
            <polymorphic>TAGGCGGACTGTGTTGATTATGGAGTTATCACTGGATGATTTTCGAGTGATTACATCCCATTTCTCGGGTGTTAACACTAGCATCTGGGTGTCGGCCACTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTCTAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGRAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTAAAATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAAGTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAATGTTGGATATCTGGAATTTTCGAGATTTTGGGATTCTGAATAATTCCCGAATTTTGAATATGTTCAGCATCTTCAGGATTTTCCAGAATCTTCTTCTTACCTTCAATCCCAACGGTGCCAATCTCTTCCCGAACGATTCGGTCATTTCAGTTGCCAACGCTTTCATAGGTGCAATATAGATAATCTTAAAGTCGTCCTTCATAATTTCTCCTCTCGAATTCTGATGCTCATGAATTGTATTCAAAATTGTCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCATTTCGAGACAGTTGAGT</pcr_primer_p1>
		<pcr_primer_p2>GATTATCTATATTGCACCTATGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>833</pcr_amplicon_size>
		<canonical_amplicon>CTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTCTAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGAAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTAAAATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAAGTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAATGTTGGATATCTGGAATTTTCGAGATTTTGGGATTCTGAATAATTCCCGAATTTTGAATATGTTCAGCATCTTCAGGATTTTCCAGAATCTTCTTCTTACCTTCAATCCCAACGGTGCCAATCTCTTCCCGAACGATTCGGTCATTTCAGTTGCCAACGCTTTCATAGGTGCAATATAGATAATC</canonical_amplicon>
		<polymorphic_amplicon>CTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTCTAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGRAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTAAAATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAAGTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAATGTTGGATATCTGGAATTTTCGAGATTTTGGGATTCTGAATAATTCCCGAATTTTGAATATGTTCAGCATCTTCAGGATTTTCCAGAATCTTCTTCTTACCTTCAATCCCAACGGTGCCAATCTCTTCCCGAACGATTCGGTCATTTCAGTTGCCAACGCTTTCATAGGTGCAATATAGATAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25438</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>93916</contig_pos>
        <strand></strand>
        <context>caaaacctta[A/G]aattcgataa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCAGAGAAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTA</left_flank>
        <right_flank>AATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAGTGATTACATCCCATTTCTCGGGTGTTAACACTAGCATCTGGGTGTCGGCCACTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTCTAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGAAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTAAAATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAAGTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAATGTTGGATATCTGGAATTTTCGAGATTTTGGGATTCTGAATAATTCCCGAATTTTGAATATGTTCAGCATCTTCAGGATTTTCCAGAATCTTCTTCTTACCTTCAATCCCAACGGTGCCAATCTCTTCCCGAACGATTCGGTCATTTCAGTTGCCAACGCTTTCATAGGTGCAATATAGATAATCTTAAAGTCGTCCTTCATAATTTCTCCTCTCGAATTCTGATGCTCATGAATTGTATTCAAAATTGTCAACATTGCGATGTTCGTTTTTCCGGCTCCAGTCGGTGCACAAATC</canonical>
            <polymorphic>TCGAGTGATTACATCCCATTTCTCGGGTGTTAACACTAGCATCTGGGTGTCGGCCACTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTCTAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGAAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTARAATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAAGTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAATGTTGGATATCTGGAATTTTCGAGATTTTGGGATTCTGAATAATTCCCGAATTTTGAATATGTTCAGCATCTTCAGGATTTTCCAGAATCTTCTTCTTACCTTCAATCCCAACGGTGCCAATCTCTTCCCGAACGATTCGGTCATTTCAGTTGCCAACGCTTTCATAGGTGCAATATAGATAATCTTAAAGTCGTCCTTCATAATTTCTCCTCTCGAATTCTGATGCTCATGAATTGTATTCAAAATTGTCAACATTGCGATGTTCGTTTTTCCGGCTCCAGTCGGTGCACAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>167 133 80 50 46 35 34 33 32 32 24 24 24 23 20 17 17 17 16 15 11 9 9 9 9 8 8 8 8 8 8 8 8 8 7 7 7 7 7 7</canonical_bands>
                <polymorphic_bands>167 133 80 58 50 46 35 33 32 32 24 24 23 20 17 17 17 16 15 11 9 9 9 9 8 8 8 8 8 8 8 8 8 7 7 7 7 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>467 199 194 110 30</canonical_bands>
                <polymorphic_bands>661 199 110 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCATTTCGAGACAGTTGAGT</pcr_primer_p1>
		<pcr_primer_p2>GATTATCTATATTGCACCTATGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>833</pcr_amplicon_size>
		<canonical_amplicon>CTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTCTAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGAAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTAAAATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAAGTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAATGTTGGATATCTGGAATTTTCGAGATTTTGGGATTCTGAATAATTCCCGAATTTTGAATATGTTCAGCATCTTCAGGATTTTCCAGAATCTTCTTCTTACCTTCAATCCCAACGGTGCCAATCTCTTCCCGAACGATTCGGTCATTTCAGTTGCCAACGCTTTCATAGGTGCAATATAGATAATC</canonical_amplicon>
		<polymorphic_amplicon>CTTCATTTCGAGACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTCTAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGAAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTARAATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAAGTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAATGTTGGATATCTGGAATTTTCGAGATTTTGGGATTCTGAATAATTCCCGAATTTTGAATATGTTCAGCATCTTCAGGATTTTCCAGAATCTTCTTCTTACCTTCAATCCCAACGGTGCCAATCTCTTCCCGAACGATTCGGTCATTTCAGTTGCCAACGCTTTCATAGGTGCAATATAGATAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25439</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>93983</contig_pos>
        <strand></strand>
        <context>cagatttcaa[G/A]tttctagaat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAA</left_flank>
        <right_flank>TTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTCTAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGAAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTAAAATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAAGTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAATGTTGGATATCTGGAATTTTCGAGATTTTGGGATTCTGAATAATTCCCGAATTTTGAATATGTTCAGCATCTTCAGGATTTTCCAGAATCTTCTTCTTACCTTCAATCCCAACGGTGCCAATCTCTTCCCGAACGATTCGGTCATTTCAGTTGCCAACGCTTTCATAGGTGCAATATAGATAATCTTAAAGTCGTCCTTCATAATTTCTCCTCTCGAATTCTGATGCTCATGAATTGTATTCAAAATTGTCAACATTGCGATGTTCGTTTTTCCGGCTCCAGTCGGTGCACAAATCAGAAGATTCTCTTTGGTTTTGTACGCTTGTTCGAATACGATCGATTGGATCACGTTCAGCTTTTCGA</canonical>
            <polymorphic>GACAGTTGAGTGTCTCCGGTCAACTCTTTCACCTGAAAAATAGCGAGTTTATGAGAATATTTGGAAAATTCGAAAATTCTGAATATCGAGATTTAGAAATTTAGAAATTCTCAAAATTCAAAAAATTCAGAAATTTGAAAAATCTCGAAATTTCAGAAATTGAGAAATTCTAAAATTCGGTAACTCGAAAGTTCAGAAATTCAGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTCTAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGAAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTAAAATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAARTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAATGTTGGATATCTGGAATTTTCGAGATTTTGGGATTCTGAATAATTCCCGAATTTTGAATATGTTCAGCATCTTCAGGATTTTCCAGAATCTTCTTCTTACCTTCAATCCCAACGGTGCCAATCTCTTCCCGAACGATTCGGTCATTTCAGTTGCCAACGCTTTCATAGGTGCAATATAGATAATCTTAAAGTCGTCCTTCATAATTTCTCCTCTCGAATTCTGATGCTCATGAATTGTATTCAAAATTGTCAACATTGCGATGTTCGTTTTTCCGGCTCCAGTCGGTGCACAAATCAGAAGATTCTCTTTGGTTTTGTACGCTTGTTCGAATACGATCGATTGGATCACGTTCAGCTTTTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCATTTCGAGACAGTTGAGT</pcr_primer_p1>
		<pcr_primer_p2>GATTATCTATATTGCACCTATGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>833</pcr_amplicon_size>
		<canonical_amplicon>AGTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAATGTTGGATATCTGGAATTTTCGAGATTTTGGGATTCTGAATAATTCCCGAATTTTGAATATGTTCAGCATCTTCAGGATTTTCCAGAATCTTCTTCTTACCTTCAATCCCAACGGTGCCAATCTCTTCCCGAACGATTCGGTCATTTCAGTTGCCAACGCTTTCATAGGTGCAATATAGATAATC</canonical_amplicon>
		<polymorphic_amplicon>ARTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAATGTTGGATATCTGGAATTTTCGAGATTTTGGGATTCTGAATAATTCCCGAATTTTGAATATGTTCAGCATCTTCAGGATTTTCCAGAATCTTCTTCTTACCTTCAATCCCAACGGTGCCAATCTCTTCCCGAACGATTCGGTCATTTCAGTTGCCAACGCTTTCATAGGTGCAATATAGATAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25440</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>94185</contig_pos>
        <strand></strand>
        <context>tgaatatgtt[C/T]agcatcttca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTTCGAGATTTTGGGATTCTGAATAATTCCCGAATTTTGAATATGTT</left_flank>
        <right_flank>AGCATCTTCAGGATTTTCCAGAATCTTCTTCTTACCTTCAATCCCAACGG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTCTAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGAAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTAAAATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAAGTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAATGTTGGATATCTGGAATTTTCGAGATTTTGGGATTCTGAATAATTCCCGAATTTTGAATATGTTCAGCATCTTCAGGATTTTCCAGAATCTTCTTCTTACCTTCAATCCCAACGGTGCCAATCTCTTCCCGAACGATTCGGTCATTTCAGTTGCCAACGCTTTCATAGGTGCAATATAGATAATCTTAAAGTCGTCCTTCATAATTTCTCCTCTCGAATTCTGATGCTCATGAATTGTATTCAAAATTGTCAACATTGCGATGTTCGTTTTTCCGGCTCCAGTCGGTGCACAAATCAGAAGATTCTCTTTGGTTTTGTACGCTTGTTCGAATACGATCGATTGGATCACGTTCAGCTTTTCGAAACCCTGGAAAAATTTGAGAAATTAAGAGATGGAGGCATTTTTAGAGCATTTCGGCTCATTTTTTACAATTTTAGGTTTCTGGCAGTGGACCACAAGACCATTTTTAGCGAATTTCGAACCACTTTCTTAGGTTTTGGACCGTTTTGAACGAAATTCGGGTCACTTTTAGACCAAATTTGGAAAGTTTAAAATCAATCTTGA</canonical>
            <polymorphic>AGAATTTCAGAACTTCAGCATCTTATAGCTTCAGAAATTCTGAATTTCCAAATCTCAGACTTTGAGAATCTCAGAATTTCAAATTTTCAGAATTTTATAGCTTCAGATTTTCAGAATTTCTAAATTTCAGAAATTGAGAAATTCTAAAATTTGGAAATTCGAAATTTCAGAATTTCTAAAAATCAGAGAAAATTCGGAATTTTTTAGAATCTCAGAACTTCAAAACCTTAAAATTCGATAATTTTAGAACTCCAGAATTTCAAAACTTTGTCTTTTGAGTATTTTTACAGATTTCAAGTTTCTAGAATTTCAGAATCTTTCAAGTCCAGAGAATACGAAAGGAAGCTCAAAAATTCTAAATTTCGAAACTTCAGAATTTATCTAAAATTCAAAAAATTCAGAACGTAAGAATTTTCGAATTTTAAAAACCTCAAATGTTGGATATCTGGAATTTTCGAGATTTTGGGATTCTGAATAATTCCCGAATTTTGAATATGTTYAGCATCTTCAGGATTTTCCAGAATCTTCTTCTTACCTTCAATCCCAACGGTGCCAATCTCTTCCCGAACGATTCGGTCATTTCAGTTGCCAACGCTTTCATAGGTGCAATATAGATAATCTTAAAGTCGTCCTTCATAATTTCTCCTCTCGAATTCTGATGCTCATGAATTGTATTCAAAATTGTCAACATTGCGATGTTCGTTTTTCCGGCTCCAGTCGGTGCACAAATCAGAAGATTCTCTTTGGTTTTGTACGCTTGTTCGAATACGATCGATTGGATCACGTTCAGCTTTTCGAAACCCTGGAAAAATTTGAGAAATTAAGAGATGGAGGCATTTTTAGAGCATTTCGGCTCATTTTTTACAATTTTAGGTTTCTGGCAGTGGACCACAAGACCATTTTTAGCGAATTTCGAACCACTTTCTTAGGTTTTGGACCGTTTTGAACGAAATTCGGGTCACTTTTAGACCAAATTTGGAAAGTTTAAAATCAATCTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCATTTCGAGACAGTTGAGT</pcr_primer_p1>
		<pcr_primer_p2>GATTATCTATATTGCACCTATGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>833</pcr_amplicon_size>
		<canonical_amplicon>TCAGCATCTTCAGGATTTTCCAGAATCTTCTTCTTACCTTCAATCCCAACGGTGCCAATCTCTTCCCGAACGATTCGGTCATTTCAGTTGCCAACGCTTTCATAGGTGCAATATAGATAATC</canonical_amplicon>
		<polymorphic_amplicon>TYAGCATCTTCAGGATTTTCCAGAATCTTCTTCTTACCTTCAATCCCAACGGTGCCAATCTCTTCCCGAACGATTCGGTCATTTCAGTTGCCAACGCTTTCATAGGTGCAATATAGATAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25441</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>96054</contig_pos>
        <strand></strand>
        <context>AATTAAAAAA[T/A]TACAWAMAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GAGTTCCGGAATCTCAAAATTAAAATTACAACATTTCATTAATTAAAAAA</left_flank>
        <right_flank>TACATAAAGTAAAATTACAAAATTTCGAAAATTAGAAACTTCGGAGTTTC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATCTCAGAATCTCAAATGCTCCAAATTTGAGAATGTCACAATTACCGAATTCTGGAACTTTGGAATTTATTATTTTAGAATTTAAGTCAAAATCTCGAAATGGCAATATTTCAAAACTTTTCAGAAATTCTGAATCTTCAAAAATTCGAGTTTAGAATTCTAAAATTCCAAAGTTCGCAGAAAATCGGAATCTCGAAATTCCAAAATCTTGATATTCCAAAAATTCAGAATGAAGCATTTTCCAGAATCTCCCGTAATTCTAGAATTTGAGTTTTTTTCACAAATTAAAAATTTTTGAATTTCAGAATCTCAAAATCTTTGAATTTTGAAAATCACAAAAGATCGAAATATAGGATAATAGGCATTTTAGATTTTTAGAATCTTTCAGAATTTCGAAATTTCAAAATTCAAAATTCCAGAATTATGGATTTTCGAATTACAGAAATAGAGTTCCGGAATCTCAAAATTAAAATTACAACATTTCATTAATTAAAAAATTACATAAAGTAAAATTACAAAATTTCGAAAATTAGAAACTTCGGAGTTTCAGTTTCTTCCAAAGTTCAAAAATTTGGAAAATTTCAGATTTCACCTGTATTTCCTTTTTTGCCAATTCCAGCTCCAACTTCTCCTCATCCCCAAACGCATGTATCACTCGATTCAACTCTCTTCTCGTTCGTTTTTCCTCTTTCCGCATTTCTCGCCGTTTCTCATTTTGTGACGTCGATTGGACACTGACAGTTTGCAGAAATCCAGGTACTGATGGCTGAAAAAGTAGGGGGAATTTGAAATTTTTCGAATTTAATGGAATTTAATTGGTTACGGTATGCTTTATTTTTTGTAGTTCCTGGGAACAATAGTACAACTACAGTAAACCTGAATTCTAGATGAAGATACTGTAGCTACTCTAGAGCTACAGTATCTACAGTGAAATGTCTACAGTAAGCCGGCCGTATAAACAACAGGTAAACCTAACCACGTGGAGTTTTCAAATAGCT</canonical>
            <polymorphic>AAATCTCAGAATCTCAAATGCTCCAAATTTGAGAATGTCACAATTACCGAATTCTGGAACTTTGGAATTTATTATTTTAGAATTTAAGTCAAAATCTCGAAATGGCAATATTTCAAAACTTTTCAGAAATTCTGAATCTTCAAAAATTCGAGTTTAGAATTCTAAAATTCCAAAGTTCGCAGAAAATCGGAATCTCGAAATTCCAAAATCTTGATATTCCAAAAATTCAGAATGAAGCATTTTCCAGAATCTCCCGTAATTCTAGAATTTGAGTTTTTTTCACAAATTAAAAATTTTTGAATTTCAGAATCTCAAAATCTTTGAATTTTGAAAATCACAAAAGATCGAAATATAGGATAATAGGCATTTTAGATTTTTAGAATCTTTCAGAATTTCGAAATTTCAAAATTCAAAATTCCAGAATTATGGATTTTCGAATTACAGAAATAGAGTTCCGGAATCTCAAAATTAAAATTACAACATTTCATTAATTAAAAAAWTACATAAAGTAAAATTACAAAATTTCGAAAATTAGAAACTTCGGAGTTTCAGTTTCTTCCAAAGTTCAAAAATTTGGAAAATTTCAGATTTCACCTGTATTTCCTTTTTTGCCAATTCCAGCTCCAACTTCTCCTCATCCCCAAACGCATGTATCACTCGATTCAACTCTCTTCTCGTTCGTTTTTCCTCTTTCCGCATTTCTCGCCGTTTCTCATTTTGTGACGTCGATTGGACACTGACAGTTTGCAGAAATCCAGGTACTGATGGCTGAAAAAGTAGGGGGAATTTGAAATTTTTCGAATTTAATGGAATTTAATTGGTTACGGTATGCTTTATTTTTTGTAGTTCCTGGGAACAATAGTACAACTACAGTAAACCTGAATTCTAGATGAAGATACTGTAGCTACTCTAGAGCTACAGTATCTACAGTGAAATGTCTACAGTAAGCCGGCCGTATAAACAACAGGTAAACCTAACCACGTGGAGTTTTCAAATAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>171 119 67 66 47 41 34 34 33 30 25 25 24 19 17 17 16 16 15 15 15 13 10 9 9 9 8 8 8 8 8 8 8 8 8 7 7 7 6 5</canonical_bands>
                <polymorphic_bands>171 119 67 66 47 41 34 34 33 30 25 25 24 23 19 17 17 16 16 15 15 13 10 9 9 9 8 8 8 8 8 8 8 8 7 7 7 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGGATTCCAGAATTTCAGA</pcr_primer_p1>
		<pcr_primer_p2>AATTTTTGAACTTTGGAAGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>695</pcr_amplicon_size>
		<canonical_amplicon>ATTACATAAAGTAAAATTACAAAATTTCGAAAATTAGAAACTTCGGAGTTTCAGTTTCTTCCAAAGTTCAAAAATT</canonical_amplicon>
		<polymorphic_amplicon>AWTACATAAAGTAAAATTACAAAATTTCGAAAATTAGAAACTTCGGAGTTTCAGTTTCTTCCAAAGTTCAAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25442</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>96059</contig_pos>
        <strand></strand>
        <context>AAAAAWTACA[T/A]AMAGTAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CCGGAATCTCAAAATTAAAATTACAACATTTCATTAATTAAAAAATTACA</left_flank>
        <right_flank>AAAGTAAAATTACAAAATTTCGAAAATTAGAAACTTCGGAGTTTCAGTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGAATCTCAAATGCTCCAAATTTGAGAATGTCACAATTACCGAATTCTGGAACTTTGGAATTTATTATTTTAGAATTTAAGTCAAAATCTCGAAATGGCAATATTTCAAAACTTTTCAGAAATTCTGAATCTTCAAAAATTCGAGTTTAGAATTCTAAAATTCCAAAGTTCGCAGAAAATCGGAATCTCGAAATTCCAAAATCTTGATATTCCAAAAATTCAGAATGAAGCATTTTCCAGAATCTCCCGTAATTCTAGAATTTGAGTTTTTTTCACAAATTAAAAATTTTTGAATTTCAGAATCTCAAAATCTTTGAATTTTGAAAATCACAAAAGATCGAAATATAGGATAATAGGCATTTTAGATTTTTAGAATCTTTCAGAATTTCGAAATTTCAAAATTCAAAATTCCAGAATTATGGATTTTCGAATTACAGAAATAGAGTTCCGGAATCTCAAAATTAAAATTACAACATTTCATTAATTAAAAAATTACATAAAGTAAAATTACAAAATTTCGAAAATTAGAAACTTCGGAGTTTCAGTTTCTTCCAAAGTTCAAAAATTTGGAAAATTTCAGATTTCACCTGTATTTCCTTTTTTGCCAATTCCAGCTCCAACTTCTCCTCATCCCCAAACGCATGTATCACTCGATTCAACTCTCTTCTCGTTCGTTTTTCCTCTTTCCGCATTTCTCGCCGTTTCTCATTTTGTGACGTCGATTGGACACTGACAGTTTGCAGAAATCCAGGTACTGATGGCTGAAAAAGTAGGGGGAATTTGAAATTTTTCGAATTTAATGGAATTTAATTGGTTACGGTATGCTTTATTTTTTGTAGTTCCTGGGAACAATAGTACAACTACAGTAAACCTGAATTCTAGATGAAGATACTGTAGCTACTCTAGAGCTACAGTATCTACAGTGAAATGTCTACAGTAAGCCGGCCGTATAAACAACAGGTAAACCTAACCACGTGGAGTTTTCAAATAGCTACAGT</canonical>
            <polymorphic>TCAGAATCTCAAATGCTCCAAATTTGAGAATGTCACAATTACCGAATTCTGGAACTTTGGAATTTATTATTTTAGAATTTAAGTCAAAATCTCGAAATGGCAATATTTCAAAACTTTTCAGAAATTCTGAATCTTCAAAAATTCGAGTTTAGAATTCTAAAATTCCAAAGTTCGCAGAAAATCGGAATCTCGAAATTCCAAAATCTTGATATTCCAAAAATTCAGAATGAAGCATTTTCCAGAATCTCCCGTAATTCTAGAATTTGAGTTTTTTTCACAAATTAAAAATTTTTGAATTTCAGAATCTCAAAATCTTTGAATTTTGAAAATCACAAAAGATCGAAATATAGGATAATAGGCATTTTAGATTTTTAGAATCTTTCAGAATTTCGAAATTTCAAAATTCAAAATTCCAGAATTATGGATTTTCGAATTACAGAAATAGAGTTCCGGAATCTCAAAATTAAAATTACAACATTTCATTAATTAAAAAATTACAWAAAGTAAAATTACAAAATTTCGAAAATTAGAAACTTCGGAGTTTCAGTTTCTTCCAAAGTTCAAAAATTTGGAAAATTTCAGATTTCACCTGTATTTCCTTTTTTGCCAATTCCAGCTCCAACTTCTCCTCATCCCCAAACGCATGTATCACTCGATTCAACTCTCTTCTCGTTCGTTTTTCCTCTTTCCGCATTTCTCGCCGTTTCTCATTTTGTGACGTCGATTGGACACTGACAGTTTGCAGAAATCCAGGTACTGATGGCTGAAAAAGTAGGGGGAATTTGAAATTTTTCGAATTTAATGGAATTTAATTGGTTACGGTATGCTTTATTTTTTGTAGTTCCTGGGAACAATAGTACAACTACAGTAAACCTGAATTCTAGATGAAGATACTGTAGCTACTCTAGAGCTACAGTATCTACAGTGAAATGTCTACAGTAAGCCGGCCGTATAAACAACAGGTAAACCTAACCACGTGGAGTTTTCAAATAGCTACAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGATTCCAGAATTTCAGA</pcr_primer_p1>
		<pcr_primer_p2>AATTTTTGAACTTTGGAAGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>695</pcr_amplicon_size>
		<canonical_amplicon>ATAAAGTAAAATTACAAAATTTCGAAAATTAGAAACTTCGGAGTTTCAGTTTCTTCCAAAGTTCAAAAATT</canonical_amplicon>
		<polymorphic_amplicon>AWAAAGTAAAATTACAAAATTTCGAAAATTAGAAACTTCGGAGTTTCAGTTTCTTCCAAAGTTCAAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25443</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>96061</contig_pos>
        <strand></strand>
        <context>AAAWTACAWA[A/C]AGTAAAATTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGAATCTCAAAATTAAAATTACAACATTTCATTAATTAAAAAATTACATA</left_flank>
        <right_flank>AGTAAAATTACAAAATTTCGAAAATTAGAAACTTCGGAGTTTCAGTTTCT</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATCTCAAATGCTCCAAATTTGAGAATGTCACAATTACCGAATTCTGGAACTTTGGAATTTATTATTTTAGAATTTAAGTCAAAATCTCGAAATGGCAATATTTCAAAACTTTTCAGAAATTCTGAATCTTCAAAAATTCGAGTTTAGAATTCTAAAATTCCAAAGTTCGCAGAAAATCGGAATCTCGAAATTCCAAAATCTTGATATTCCAAAAATTCAGAATGAAGCATTTTCCAGAATCTCCCGTAATTCTAGAATTTGAGTTTTTTTCACAAATTAAAAATTTTTGAATTTCAGAATCTCAAAATCTTTGAATTTTGAAAATCACAAAAGATCGAAATATAGGATAATAGGCATTTTAGATTTTTAGAATCTTTCAGAATTTCGAAATTTCAAAATTCAAAATTCCAGAATTATGGATTTTCGAATTACAGAAATAGAGTTCCGGAATCTCAAAATTAAAATTACAACATTTCATTAATTAAAAAATTACATAAAGTAAAATTACAAAATTTCGAAAATTAGAAACTTCGGAGTTTCAGTTTCTTCCAAAGTTCAAAAATTTGGAAAATTTCAGATTTCACCTGTATTTCCTTTTTTGCCAATTCCAGCTCCAACTTCTCCTCATCCCCAAACGCATGTATCACTCGATTCAACTCTCTTCTCGTTCGTTTTTCCTCTTTCCGCATTTCTCGCCGTTTCTCATTTTGTGACGTCGATTGGACACTGACAGTTTGCAGAAATCCAGGTACTGATGGCTGAAAAAGTAGGGGGAATTTGAAATTTTTCGAATTTAATGGAATTTAATTGGTTACGGTATGCTTTATTTTTTGTAGTTCCTGGGAACAATAGTACAACTACAGTAAACCTGAATTCTAGATGAAGATACTGTAGCTACTCTAGAGCTACAGTATCTACAGTGAAATGTCTACAGTAAGCCGGCCGTATAAACAACAGGTAAACCTAACCACGTGGAGTTTTCAAATAGCTACAGTAT</canonical>
            <polymorphic>AGAATCTCAAATGCTCCAAATTTGAGAATGTCACAATTACCGAATTCTGGAACTTTGGAATTTATTATTTTAGAATTTAAGTCAAAATCTCGAAATGGCAATATTTCAAAACTTTTCAGAAATTCTGAATCTTCAAAAATTCGAGTTTAGAATTCTAAAATTCCAAAGTTCGCAGAAAATCGGAATCTCGAAATTCCAAAATCTTGATATTCCAAAAATTCAGAATGAAGCATTTTCCAGAATCTCCCGTAATTCTAGAATTTGAGTTTTTTTCACAAATTAAAAATTTTTGAATTTCAGAATCTCAAAATCTTTGAATTTTGAAAATCACAAAAGATCGAAATATAGGATAATAGGCATTTTAGATTTTTAGAATCTTTCAGAATTTCGAAATTTCAAAATTCAAAATTCCAGAATTATGGATTTTCGAATTACAGAAATAGAGTTCCGGAATCTCAAAATTAAAATTACAACATTTCATTAATTAAAAAATTACATAMAGTAAAATTACAAAATTTCGAAAATTAGAAACTTCGGAGTTTCAGTTTCTTCCAAAGTTCAAAAATTTGGAAAATTTCAGATTTCACCTGTATTTCCTTTTTTGCCAATTCCAGCTCCAACTTCTCCTCATCCCCAAACGCATGTATCACTCGATTCAACTCTCTTCTCGTTCGTTTTTCCTCTTTCCGCATTTCTCGCCGTTTCTCATTTTGTGACGTCGATTGGACACTGACAGTTTGCAGAAATCCAGGTACTGATGGCTGAAAAAGTAGGGGGAATTTGAAATTTTTCGAATTTAATGGAATTTAATTGGTTACGGTATGCTTTATTTTTTGTAGTTCCTGGGAACAATAGTACAACTACAGTAAACCTGAATTCTAGATGAAGATACTGTAGCTACTCTAGAGCTACAGTATCTACAGTGAAATGTCTACAGTAAGCCGGCCGTATAAACAACAGGTAAACCTAACCACGTGGAGTTTTCAAATAGCTACAGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGATTCCAGAATTTCAGA</pcr_primer_p1>
		<pcr_primer_p2>AATTTTTGAACTTTGGAAGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>695</pcr_amplicon_size>
		<canonical_amplicon>AAAGTAAAATTACAAAATTTCGAAAATTAGAAACTTCGGAGTTTCAGTTTCTTCCAAAGTTCAAAAATT</canonical_amplicon>
		<polymorphic_amplicon>AMAGTAAAATTACAAAATTTCGAAAATTAGAAACTTCGGAGTTTCAGTTTCTTCCAAAGTTCAAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25444</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>96076</contig_pos>
        <strand></strand>
        <context>AAATTACAAA[A/C]TTTCGAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATTACAACATTTCATTAATTAAAAAATTACATAAAGTAAAATTACAAA</left_flank>
        <right_flank>TTTCGAAAATTAGAAACTTCGGAGTTTCAGTTTCTTCCAAAGTTCAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAATTTGAGAATGTCACAATTACCGAATTCTGGAACTTTGGAATTTATTATTTTAGAATTTAAGTCAAAATCTCGAAATGGCAATATTTCAAAACTTTTCAGAAATTCTGAATCTTCAAAAATTCGAGTTTAGAATTCTAAAATTCCAAAGTTCGCAGAAAATCGGAATCTCGAAATTCCAAAATCTTGATATTCCAAAAATTCAGAATGAAGCATTTTCCAGAATCTCCCGTAATTCTAGAATTTGAGTTTTTTTCACAAATTAAAAATTTTTGAATTTCAGAATCTCAAAATCTTTGAATTTTGAAAATCACAAAAGATCGAAATATAGGATAATAGGCATTTTAGATTTTTAGAATCTTTCAGAATTTCGAAATTTCAAAATTCAAAATTCCAGAATTATGGATTTTCGAATTACAGAAATAGAGTTCCGGAATCTCAAAATTAAAATTACAACATTTCATTAATTAAAAAATTACATAAAGTAAAATTACAAAATTTCGAAAATTAGAAACTTCGGAGTTTCAGTTTCTTCCAAAGTTCAAAAATTTGGAAAATTTCAGATTTCACCTGTATTTCCTTTTTTGCCAATTCCAGCTCCAACTTCTCCTCATCCCCAAACGCATGTATCACTCGATTCAACTCTCTTCTCGTTCGTTTTTCCTCTTTCCGCATTTCTCGCCGTTTCTCATTTTGTGACGTCGATTGGACACTGACAGTTTGCAGAAATCCAGGTACTGATGGCTGAAAAAGTAGGGGGAATTTGAAATTTTTCGAATTTAATGGAATTTAATTGGTTACGGTATGCTTTATTTTTTGTAGTTCCTGGGAACAATAGTACAACTACAGTAAACCTGAATTCTAGATGAAGATACTGTAGCTACTCTAGAGCTACAGTATCTACAGTGAAATGTCTACAGTAAGCCGGCCGTATAAACAACAGGTAAACCTAACCACGTGGAGTTTTCAAATAGCTACAGTATACCTACAGTATAACC</canonical>
            <polymorphic>CCAAATTTGAGAATGTCACAATTACCGAATTCTGGAACTTTGGAATTTATTATTTTAGAATTTAAGTCAAAATCTCGAAATGGCAATATTTCAAAACTTTTCAGAAATTCTGAATCTTCAAAAATTCGAGTTTAGAATTCTAAAATTCCAAAGTTCGCAGAAAATCGGAATCTCGAAATTCCAAAATCTTGATATTCCAAAAATTCAGAATGAAGCATTTTCCAGAATCTCCCGTAATTCTAGAATTTGAGTTTTTTTCACAAATTAAAAATTTTTGAATTTCAGAATCTCAAAATCTTTGAATTTTGAAAATCACAAAAGATCGAAATATAGGATAATAGGCATTTTAGATTTTTAGAATCTTTCAGAATTTCGAAATTTCAAAATTCAAAATTCCAGAATTATGGATTTTCGAATTACAGAAATAGAGTTCCGGAATCTCAAAATTAAAATTACAACATTTCATTAATTAAAAAATTACATAAAGTAAAATTACAAAMTTTCGAAAATTAGAAACTTCGGAGTTTCAGTTTCTTCCAAAGTTCAAAAATTTGGAAAATTTCAGATTTCACCTGTATTTCCTTTTTTGCCAATTCCAGCTCCAACTTCTCCTCATCCCCAAACGCATGTATCACTCGATTCAACTCTCTTCTCGTTCGTTTTTCCTCTTTCCGCATTTCTCGCCGTTTCTCATTTTGTGACGTCGATTGGACACTGACAGTTTGCAGAAATCCAGGTACTGATGGCTGAAAAAGTAGGGGGAATTTGAAATTTTTCGAATTTAATGGAATTTAATTGGTTACGGTATGCTTTATTTTTTGTAGTTCCTGGGAACAATAGTACAACTACAGTAAACCTGAATTCTAGATGAAGATACTGTAGCTACTCTAGAGCTACAGTATCTACAGTGAAATGTCTACAGTAAGCCGGCCGTATAAACAACAGGTAAACCTAACCACGTGGAGTTTTCAAATAGCTACAGTATACCTACAGTATAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>205 141 107 71 67 50 47 42 33 26 25 24 24 17 16 15 13 10 9 9 8 8 8 8 7 7 3</canonical_bands>
                <polymorphic_bands>205 157 141 71 67 47 42 33 26 25 24 24 17 16 15 13 10 9 9 8 8 8 8 7 7 3</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>171 141 67 66 47 41 34 34 33 30 25 24 19 17 17 16 16 15 15 15 13 10 9 9 9 8 8 8 8 8 8 8 8 8 7 7 7 6 5 3</canonical_bands>
                <polymorphic_bands>171 141 67 66 47 41 34 34 33 30 25 24 19 17 17 17 16 16 15 15 15 13 10 9 9 8 8 8 8 8 8 8 8 7 7 7 6 5 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAGAAGATCAGAAGCTTGAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTTTGAACTTTGGAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>730</pcr_amplicon_size>
		<canonical_amplicon>AATTTCGAAAATTAGAAACTTCGGAGTTTCAGTTTCTTCCAAAGTTCAAAAATTT</canonical_amplicon>
		<polymorphic_amplicon>AMTTTCGAAAATTAGAAACTTCGGAGTTTCAGTTTCTTCCAAAGTTCAAAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25445</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>96130</contig_pos>
        <strand></strand>
        <context>TCAAAAATTT[G/T]GAAAATTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGAAAATTAGAAACTTCGGAGTTTCAGTTTCTTCCAAAGTTCAAAAATTT</left_flank>
        <right_flank>GAAAATTTCAGATTTCACCTGTATTTCCTTTTTTGCCAATTCCAGCTCCA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGAATTTAAGTCAAAATCTCGAAATGGCAATATTTCAAAACTTTTCAGAAATTCTGAATCTTCAAAAATTCGAGTTTAGAATTCTAAAATTCCAAAGTTCGCAGAAAATCGGAATCTCGAAATTCCAAAATCTTGATATTCCAAAAATTCAGAATGAAGCATTTTCCAGAATCTCCCGTAATTCTAGAATTTGAGTTTTTTTCACAAATTAAAAATTTTTGAATTTCAGAATCTCAAAATCTTTGAATTTTGAAAATCACAAAAGATCGAAATATAGGATAATAGGCATTTTAGATTTTTAGAATCTTTCAGAATTTCGAAATTTCAAAATTCAAAATTCCAGAATTATGGATTTTCGAATTACAGAAATAGAGTTCCGGAATCTCAAAATTAAAATTACAACATTTCATTAATTAAAAAATTACATAAAGTAAAATTACAAAATTTCGAAAATTAGAAACTTCGGAGTTTCAGTTTCTTCCAAAGTTCAAAAATTTGGAAAATTTCAGATTTCACCTGTATTTCCTTTTTTGCCAATTCCAGCTCCAACTTCTCCTCATCCCCAAACGCATGTATCACTCGATTCAACTCTCTTCTCGTTCGTTTTTCCTCTTTCCGCATTTCTCGCCGTTTCTCATTTTGTGACGTCGATTGGACACTGACAGTTTGCAGAAATCCAGGTACTGATGGCTGAAAAAGTAGGGGGAATTTGAAATTTTTCGAATTTAATGGAATTTAATTGGTTACGGTATGCTTTATTTTTTGTAGTTCCTGGGAACAATAGTACAACTACAGTAAACCTGAATTCTAGATGAAGATACTGTAGCTACTCTAGAGCTACAGTATCTACAGTGAAATGTCTACAGTAAGCCGGCCGTATAAACAACAGGTAAACCTAACCACGTGGAGTTTTCAAATAGCTACAGTATACCTACAGTATAACCTTATTTGGATAGTAGATAGGTACCTTGTAGCTAACTACAGTATCTCTACAGTAA</canonical>
            <polymorphic>TTAGAATTTAAGTCAAAATCTCGAAATGGCAATATTTCAAAACTTTTCAGAAATTCTGAATCTTCAAAAATTCGAGTTTAGAATTCTAAAATTCCAAAGTTCGCAGAAAATCGGAATCTCGAAATTCCAAAATCTTGATATTCCAAAAATTCAGAATGAAGCATTTTCCAGAATCTCCCGTAATTCTAGAATTTGAGTTTTTTTCACAAATTAAAAATTTTTGAATTTCAGAATCTCAAAATCTTTGAATTTTGAAAATCACAAAAGATCGAAATATAGGATAATAGGCATTTTAGATTTTTAGAATCTTTCAGAATTTCGAAATTTCAAAATTCAAAATTCCAGAATTATGGATTTTCGAATTACAGAAATAGAGTTCCGGAATCTCAAAATTAAAATTACAACATTTCATTAATTAAAAAATTACATAAAGTAAAATTACAAAATTTCGAAAATTAGAAACTTCGGAGTTTCAGTTTCTTCCAAAGTTCAAAAATTTKGAAAATTTCAGATTTCACCTGTATTTCCTTTTTTGCCAATTCCAGCTCCAACTTCTCCTCATCCCCAAACGCATGTATCACTCGATTCAACTCTCTTCTCGTTCGTTTTTCCTCTTTCCGCATTTCTCGCCGTTTCTCATTTTGTGACGTCGATTGGACACTGACAGTTTGCAGAAATCCAGGTACTGATGGCTGAAAAAGTAGGGGGAATTTGAAATTTTTCGAATTTAATGGAATTTAATTGGTTACGGTATGCTTTATTTTTTGTAGTTCCTGGGAACAATAGTACAACTACAGTAAACCTGAATTCTAGATGAAGATACTGTAGCTACTCTAGAGCTACAGTATCTACAGTGAAATGTCTACAGTAAGCCGGCCGTATAAACAACAGGTAAACCTAACCACGTGGAGTTTTCAAATAGCTACAGTATACCTACAGTATAACCTTATTTGGATAGTAGATAGGTACCTTGTAGCTAACTACAGTATCTCTACAGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGATTCCAGAATTTCAGA</pcr_primer_p1>
		<pcr_primer_p2>GAGAGTTGAATCGAGTGATACAT</pcr_primer_p2>
		<pcr_amplicon_size>792</pcr_amplicon_size>
		<canonical_amplicon>TGGAAAATTTCAGATTTCACCTGTATTTCCTTTTTTGCCAATTCCAGCTCCAACTTCTCCTCATCCCCAAACGCATGTATCACTCGATTCAACTCTC</canonical_amplicon>
		<polymorphic_amplicon>TKGAAAATTTCAGATTTCACCTGTATTTCCTTTTTTGCCAATTCCAGCTCCAACTTCTCCTCATCCCCAAACGCATGTATCACTCGATTCAACTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25446</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>100160</contig_pos>
        <strand></strand>
        <context>TAGAATCACT[A/G]AAACTGGAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAAAATTCTCAAAAATCCAAAAACATTTCAGTTCAAATCTAGAATCACT</left_flank>
        <right_flank>AAACTGGAAGGCTATCAGGACGAGTTGTGTTTGGACGATACAATTGGTTT</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATATTCATCTGGTGTTTTCTAGCTCATGGTGGCCTAGAAAACTCAACTTGCGAAAGTTAGGCCACTATGTAAAATCGCTTAGAAAACACACAAGGGGCATGTTACTCCATTTCTAGACAATTTTACCATGGTGGCCTAGAAAATTCATGTTGCGAATGTTAGGCCACAGTGTTAAATTAGCCTAGAAATGACGTGATACTCATCTTGTAGGGTTTTAGGCCGTTTTAACATCTAACTTTTGCAAGTTGATTTTTCTAGGCCACTATGATGAATTGCCTAGAAAAAGTCTAAAATAGCACTATCAAAACATTGATGACAACAAAAGTTCGAGATATTTTTAAAATCCAAAAAAATTCGAAAATTTCAACGATTCTTAACGAAAACTTTTAAAAACATTCAAATATTTGCAAAAATCTGAAATTCAAAAATCCCAAATTTCCTAAAATTTCAAAAATTCTCAAAAATCCAAAAACATTTCAGTTCAAATCTAGAATCACTAAAACTGGAAGGCTATCAGGACGAGTTGTGTTTGGACGATACAATTGGTTTCTTATTGGATACAAACGTCAGCAACTACCGTATCAGTTGCATTTGGACAGGAGTTTCTCAATTCGGTCAATGTCGGGCGGTCCCAGAAATTTATATGAACCGCCCGTTTTCATTTATTGATGAAAACGAGTGGATGGGGAAATTGATGGTATGATTTTTATTTTCAGAATTTCGGAATTTTCGGAATTATGGAATTTTTGAATACCTCTAATTTTGAAAGATATAATTCTGCATTTCTCTGTTTTCTCAATTTTTGTTTTTCCAATTTTTCAAAGAATTCTATATTTCTCAATTTTCTGGAATTTTTAAAAATTTAAAAATTGTAATTTTCTATTTTTCAAAAAAAATTTCCCACATTGCAAAATACAGCATTTTTGAAAATTCGAGATTTCGAAATTCAGAATTTATTGAACTTTTAGAATCTTGGAACTTTTTGGAACAATGGAATTT</canonical>
            <polymorphic>CATATTCATCTGGTGTTTTCTAGCTCATGGTGGCCTAGAAAACTCAACTTGCGAAAGTTAGGCCACTATGTAAAATCGCTTAGAAAACACACAAGGGGCATGTTACTCCATTTCTAGACAATTTTACCATGGTGGCCTAGAAAATTCATGTTGCGAATGTTAGGCCACAGTGTTAAATTAGCCTAGAAATGACGTGATACTCATCTTGTAGGGTTTTAGGCCGTTTTAACATCTAACTTTTGCAAGTTGATTTTTCTAGGCCACTATGATGAATTGCCTAGAAAAAGTCTAAAATAGCACTATCAAAACATTGATGACAACAAAAGTTCGAGATATTTTTAAAATCCAAAAAAATTCGAAAATTTCAACGATTCTTAACGAAAACTTTTAAAAACATTCAAATATTTGCAAAAATCTGAAATTCAAAAATCCCAAATTTCCTAAAATTTCAAAAATTCTCAAAAATCCAAAAACATTTCAGTTCAAATCTAGAATCACTRAAACTGGAAGGCTATCAGGACGAGTTGTGTTTGGACGATACAATTGGTTTCTTATTGGATACAAACGTCAGCAACTACCGTATCAGTTGCATTTGGACAGGAGTTTCTCAATTCGGTCAATGTCGGGCGGTCCCAGAAATTTATATGAACCGCCCGTTTTCATTTATTGATGAAAACGAGTGGATGGGGAAATTGATGGTATGATTTTTATTTTCAGAATTTCGGAATTTTCGGAATTATGGAATTTTTGAATACCTCTAATTTTGAAAGATATAATTCTGCATTTCTCTGTTTTCTCAATTTTTGTTTTTCCAATTTTTCAAAGAATTCTATATTTCTCAATTTTCTGGAATTTTTAAAAATTTAAAAATTGTAATTTTCTATTTTTCAAAAAAAATTTCCCACATTGCAAAATACAGCATTTTTGAAAATTCGAGATTTCGAAATTCAGAATTTATTGAACTTTTAGAATCTTGGAACTTTTTGGAACAATGGAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGACAACAAAAGTTCGAGATA</pcr_primer_p1>
		<pcr_primer_p2>GTATCCAATAAGAAACCAATTGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATGACAACAAAAGTTCGAGATATTTTTAAAATCCAAAAAAATTCGAAAATTTCAACGATTCTTAACGAAAACTTTTAAAAACATTCAAATATTTGCAAAAATCTGAAATTCAAAAATCCCAAATTTCCTAAAATTTCAAAAATTCTCAAAAATCCAAAAACATTTCAGTTCAAATCTAGAATCACTAAAACTGGAAGGCTATCAGGACGAGTTGTGTTTGGACGATACAATTGGTTTCTTATTGGATAC</canonical_amplicon>
		<polymorphic_amplicon>GATGACAACAAAAGTTCGAGATATTTTTAAAATCCAAAAAAATTCGAAAATTTCAACGATTCTTAACGAAAACTTTTAAAAACATTCAAATATTTGCAAAAATCTGAAATTCAAAAATCCCAAATTTCCTAAAATTTCAAAAATTCTCAAAAATCCAAAAACATTTCAGTTCAAATCTAGAATCACTRAAACTGGAAGGCTATCAGGACGAGTTGTGTTTGGACGATACAATTGGTTTCTTATTGGATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25447</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>100413</contig_pos>
        <strand></strand>
        <context>AATTTTTGAA[T/C]ACYTCTAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GATTTTTATTTTCAGAATTTCGGAATTTTCGGAATTATGGAATTTTTGAA</left_flank>
        <right_flank>ACCTCTAATTTTGAAAGATATAATTCTGCATTTCTCTGTTTTCTCAATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTAGGCCACTATGATGAATTGCCTAGAAAAAGTCTAAAATAGCACTATCAAAACATTGATGACAACAAAAGTTCGAGATATTTTTAAAATCCAAAAAAATTCGAAAATTTCAACGATTCTTAACGAAAACTTTTAAAAACATTCAAATATTTGCAAAAATCTGAAATTCAAAAATCCCAAATTTCCTAAAATTTCAAAAATTCTCAAAAATCCAAAAACATTTCAGTTCAAATCTAGAATCACTAAAACTGGAAGGCTATCAGGACGAGTTGTGTTTGGACGATACAATTGGTTTCTTATTGGATACAAACGTCAGCAACTACCGTATCAGTTGCATTTGGACAGGAGTTTCTCAATTCGGTCAATGTCGGGCGGTCCCAGAAATTTATATGAACCGCCCGTTTTCATTTATTGATGAAAACGAGTGGATGGGGAAATTGATGGTATGATTTTTATTTTCAGAATTTCGGAATTTTCGGAATTATGGAATTTTTGAATACCTCTAATTTTGAAAGATATAATTCTGCATTTCTCTGTTTTCTCAATTTTTGTTTTTCCAATTTTTCAAAGAATTCTATATTTCTCAATTTTCTGGAATTTTTAAAAATTTAAAAATTGTAATTTTCTATTTTTCAAAAAAAATTTCCCACATTGCAAAATACAGCATTTTTGAAAATTCGAGATTTCGAAATTCAGAATTTATTGAACTTTTAGAATCTTGGAACTTTTTGGAACAATGGAATTTTGAAATTTCTAAATGTGTGAAAATCTAAAAAAAACTAAATTTTGTGAAATTCAAAAATTCAAAAATTTCGAAAAATCCAAAATGTTCAGAAATTTCGAAAAATTAAAACATTCAGAAAATTAAAAATTCCAAAAATTCAGAAATTCAAAATTTTCGAAAATCCGAAATTTCGAAAAATCTGAAATTTCAAAAATTTCAAAAAATCTGAAAATCCCAAAATTCTAAAAATTCTACATTTTGGAAACCCAAAACT</canonical>
            <polymorphic>TTCTAGGCCACTATGATGAATTGCCTAGAAAAAGTCTAAAATAGCACTATCAAAACATTGATGACAACAAAAGTTCGAGATATTTTTAAAATCCAAAAAAATTCGAAAATTTCAACGATTCTTAACGAAAACTTTTAAAAACATTCAAATATTTGCAAAAATCTGAAATTCAAAAATCCCAAATTTCCTAAAATTTCAAAAATTCTCAAAAATCCAAAAACATTTCAGTTCAAATCTAGAATCACTAAAACTGGAAGGCTATCAGGACGAGTTGTGTTTGGACGATACAATTGGTTTCTTATTGGATACAAACGTCAGCAACTACCGTATCAGTTGCATTTGGACAGGAGTTTCTCAATTCGGTCAATGTCGGGCGGTCCCAGAAATTTATATGAACCGCCCGTTTTCATTTATTGATGAAAACGAGTGGATGGGGAAATTGATGGTATGATTTTTATTTTCAGAATTTCGGAATTTTCGGAATTATGGAATTTTTGAAYACCTCTAATTTTGAAAGATATAATTCTGCATTTCTCTGTTTTCTCAATTTTTGTTTTTCCAATTTTTCAAAGAATTCTATATTTCTCAATTTTCTGGAATTTTTAAAAATTTAAAAATTGTAATTTTCTATTTTTCAAAAAAAATTTCCCACATTGCAAAATACAGCATTTTTGAAAATTCGAGATTTCGAAATTCAGAATTTATTGAACTTTTAGAATCTTGGAACTTTTTGGAACAATGGAATTTTGAAATTTCTAAATGTGTGAAAATCTAAAAAAAACTAAATTTTGTGAAATTCAAAAATTCAAAAATTTCGAAAAATCCAAAATGTTCAGAAATTTCGAAAAATTAAAACATTCAGAAAATTAAAAATTCCAAAAATTCAGAAATTCAAAATTTTCGAAAATCCGAAATTTCGAAAAATCTGAAATTTCAAAAATTTCAAAAAATCTGAAAATCCCAAAATTCTAAAAATTCTACATTTTGGAAACCCAAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAGCAACTACCGTATCAGTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAAACAAAAATTGAGAAAACA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTCAGCAACTACCGTATCAGTTGCATTTGGACAGGAGTTTCTCAATTCGGTCAATGTCGGGCGGTCCCAGAAATTTATATGAACCGCCCGTTTTCATTTATTGATGAAAACGAGTGGATGGGGAAATTGATGGTATGATTTTTATTTTCAGAATTTCGGAATTTTCGGAATTATGGAATTTTTGAATACCTCTAATTTTGAAAGATATAATTCTGCATTTCTCTGTTTTCTCAATTTTTGTTTTTC</canonical_amplicon>
		<polymorphic_amplicon>GTCAGCAACTACCGTATCAGTTGCATTTGGACAGGAGTTTCTCAATTCGGTCAATGTCGGGCGGTCCCAGAAATTTATATGAACCGCCCGTTTTCATTTATTGATGAAAACGAGTGGATGGGGAAATTGATGGTATGATTTTTATTTTCAGAATTTCGGAATTTTCGGAATTATGGAATTTTTGAAYACCTCTAATTTTGAAAGATATAATTCTGCATTTCTCTGTTTTCTCAATTTTTGTTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25448</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>100416</contig_pos>
        <strand></strand>
        <context>TTTTGAAYAC[C/T]TCTAATTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTATTTTCAGAATTTCGGAATTTTCGGAATTATGGAATTTTTGAATAC</left_flank>
        <right_flank>TCTAATTTTGAAAGATATAATTCTGCATTTCTCTGTTTTCTCAATTTTTG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGCCACTATGATGAATTGCCTAGAAAAAGTCTAAAATAGCACTATCAAAACATTGATGACAACAAAAGTTCGAGATATTTTTAAAATCCAAAAAAATTCGAAAATTTCAACGATTCTTAACGAAAACTTTTAAAAACATTCAAATATTTGCAAAAATCTGAAATTCAAAAATCCCAAATTTCCTAAAATTTCAAAAATTCTCAAAAATCCAAAAACATTTCAGTTCAAATCTAGAATCACTAAAACTGGAAGGCTATCAGGACGAGTTGTGTTTGGACGATACAATTGGTTTCTTATTGGATACAAACGTCAGCAACTACCGTATCAGTTGCATTTGGACAGGAGTTTCTCAATTCGGTCAATGTCGGGCGGTCCCAGAAATTTATATGAACCGCCCGTTTTCATTTATTGATGAAAACGAGTGGATGGGGAAATTGATGGTATGATTTTTATTTTCAGAATTTCGGAATTTTCGGAATTATGGAATTTTTGAATACCTCTAATTTTGAAAGATATAATTCTGCATTTCTCTGTTTTCTCAATTTTTGTTTTTCCAATTTTTCAAAGAATTCTATATTTCTCAATTTTCTGGAATTTTTAAAAATTTAAAAATTGTAATTTTCTATTTTTCAAAAAAAATTTCCCACATTGCAAAATACAGCATTTTTGAAAATTCGAGATTTCGAAATTCAGAATTTATTGAACTTTTAGAATCTTGGAACTTTTTGGAACAATGGAATTTTGAAATTTCTAAATGTGTGAAAATCTAAAAAAAACTAAATTTTGTGAAATTCAAAAATTCAAAAATTTCGAAAAATCCAAAATGTTCAGAAATTTCGAAAAATTAAAACATTCAGAAAATTAAAAATTCCAAAAATTCAGAAATTCAAAATTTTCGAAAATCCGAAATTTCGAAAAATCTGAAATTTCAAAAATTTCAAAAAATCTGAAAATCCCAAAATTCTAAAAATTCTACATTTTGGAAACCCAAAACTTCG</canonical>
            <polymorphic>TAGGCCACTATGATGAATTGCCTAGAAAAAGTCTAAAATAGCACTATCAAAACATTGATGACAACAAAAGTTCGAGATATTTTTAAAATCCAAAAAAATTCGAAAATTTCAACGATTCTTAACGAAAACTTTTAAAAACATTCAAATATTTGCAAAAATCTGAAATTCAAAAATCCCAAATTTCCTAAAATTTCAAAAATTCTCAAAAATCCAAAAACATTTCAGTTCAAATCTAGAATCACTAAAACTGGAAGGCTATCAGGACGAGTTGTGTTTGGACGATACAATTGGTTTCTTATTGGATACAAACGTCAGCAACTACCGTATCAGTTGCATTTGGACAGGAGTTTCTCAATTCGGTCAATGTCGGGCGGTCCCAGAAATTTATATGAACCGCCCGTTTTCATTTATTGATGAAAACGAGTGGATGGGGAAATTGATGGTATGATTTTTATTTTCAGAATTTCGGAATTTTCGGAATTATGGAATTTTTGAATACYTCTAATTTTGAAAGATATAATTCTGCATTTCTCTGTTTTCTCAATTTTTGTTTTTCCAATTTTTCAAAGAATTCTATATTTCTCAATTTTCTGGAATTTTTAAAAATTTAAAAATTGTAATTTTCTATTTTTCAAAAAAAATTTCCCACATTGCAAAATACAGCATTTTTGAAAATTCGAGATTTCGAAATTCAGAATTTATTGAACTTTTAGAATCTTGGAACTTTTTGGAACAATGGAATTTTGAAATTTCTAAATGTGTGAAAATCTAAAAAAAACTAAATTTTGTGAAATTCAAAAATTCAAAAATTTCGAAAAATCCAAAATGTTCAGAAATTTCGAAAAATTAAAACATTCAGAAAATTAAAAATTCCAAAAATTCAGAAATTCAAAATTTTCGAAAATCCGAAATTTCGAAAAATCTGAAATTTCAAAAATTTCAAAAAATCTGAAAATCCCAAAATTCTAAAAATTCTACATTTTGGAAACCCAAAACTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAGCAACTACCGTATCAGTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAAACAAAAATTGAGAAAACA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTCAGCAACTACCGTATCAGTTGCATTTGGACAGGAGTTTCTCAATTCGGTCAATGTCGGGCGGTCCCAGAAATTTATATGAACCGCCCGTTTTCATTTATTGATGAAAACGAGTGGATGGGGAAATTGATGGTATGATTTTTATTTTCAGAATTTCGGAATTTTCGGAATTATGGAATTTTTGAATACCTCTAATTTTGAAAGATATAATTCTGCATTTCTCTGTTTTCTCAATTTTTGTTTTTC</canonical_amplicon>
		<polymorphic_amplicon>GTCAGCAACTACCGTATCAGTTGCATTTGGACAGGAGTTTCTCAATTCGGTCAATGTCGGGCGGTCCCAGAAATTTATATGAACCGCCCGTTTTCATTTATTGATGAAAACGAGTGGATGGGGAAATTGATGGTATGATTTTTATTTTCAGAATTTCGGAATTTTCGGAATTATGGAATTTTTGAATACYTCTAATTTTGAAAGATATAATTCTGCATTTCTCTGTTTTCTCAATTTTTGTTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25449</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>100482</contig_pos>
        <strand></strand>
        <context>CCAATTTTTC[A/G]AAGAATTCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATAATTCTGCATTTCTCTGTTTTCTCAATTTTTGTTTTTCCAATTTTTC</left_flank>
        <right_flank>AAGAATTCTATATTTCTCAATTTTCTGGAATTTTTAAAAATTTAAAAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTTCGAGATATTTTTAAAATCCAAAAAAATTCGAAAATTTCAACGATTCTTAACGAAAACTTTTAAAAACATTCAAATATTTGCAAAAATCTGAAATTCAAAAATCCCAAATTTCCTAAAATTTCAAAAATTCTCAAAAATCCAAAAACATTTCAGTTCAAATCTAGAATCACTAAAACTGGAAGGCTATCAGGACGAGTTGTGTTTGGACGATACAATTGGTTTCTTATTGGATACAAACGTCAGCAACTACCGTATCAGTTGCATTTGGACAGGAGTTTCTCAATTCGGTCAATGTCGGGCGGTCCCAGAAATTTATATGAACCGCCCGTTTTCATTTATTGATGAAAACGAGTGGATGGGGAAATTGATGGTATGATTTTTATTTTCAGAATTTCGGAATTTTCGGAATTATGGAATTTTTGAATACCTCTAATTTTGAAAGATATAATTCTGCATTTCTCTGTTTTCTCAATTTTTGTTTTTCCAATTTTTCAAAGAATTCTATATTTCTCAATTTTCTGGAATTTTTAAAAATTTAAAAATTGTAATTTTCTATTTTTCAAAAAAAATTTCCCACATTGCAAAATACAGCATTTTTGAAAATTCGAGATTTCGAAATTCAGAATTTATTGAACTTTTAGAATCTTGGAACTTTTTGGAACAATGGAATTTTGAAATTTCTAAATGTGTGAAAATCTAAAAAAAACTAAATTTTGTGAAATTCAAAAATTCAAAAATTTCGAAAAATCCAAAATGTTCAGAAATTTCGAAAAATTAAAACATTCAGAAAATTAAAAATTCCAAAAATTCAGAAATTCAAAATTTTCGAAAATCCGAAATTTCGAAAAATCTGAAATTTCAAAAATTTCAAAAAATCTGAAAATCCCAAAATTCTAAAAATTCTACATTTTGGAAACCCAAAACTTCGAAAAAGGGAATTTCGAGAAAATCGAAAAATTCGGAAATACAAGAGCTCAAATTTTTCGAAAAATCG</canonical>
            <polymorphic>AAAGTTCGAGATATTTTTAAAATCCAAAAAAATTCGAAAATTTCAACGATTCTTAACGAAAACTTTTAAAAACATTCAAATATTTGCAAAAATCTGAAATTCAAAAATCCCAAATTTCCTAAAATTTCAAAAATTCTCAAAAATCCAAAAACATTTCAGTTCAAATCTAGAATCACTAAAACTGGAAGGCTATCAGGACGAGTTGTGTTTGGACGATACAATTGGTTTCTTATTGGATACAAACGTCAGCAACTACCGTATCAGTTGCATTTGGACAGGAGTTTCTCAATTCGGTCAATGTCGGGCGGTCCCAGAAATTTATATGAACCGCCCGTTTTCATTTATTGATGAAAACGAGTGGATGGGGAAATTGATGGTATGATTTTTATTTTCAGAATTTCGGAATTTTCGGAATTATGGAATTTTTGAATACCTCTAATTTTGAAAGATATAATTCTGCATTTCTCTGTTTTCTCAATTTTTGTTTTTCCAATTTTTCRAAGAATTCTATATTTCTCAATTTTCTGGAATTTTTAAAAATTTAAAAATTGTAATTTTCTATTTTTCAAAAAAAATTTCCCACATTGCAAAATACAGCATTTTTGAAAATTCGAGATTTCGAAATTCAGAATTTATTGAACTTTTAGAATCTTGGAACTTTTTGGAACAATGGAATTTTGAAATTTCTAAATGTGTGAAAATCTAAAAAAAACTAAATTTTGTGAAATTCAAAAATTCAAAAATTTCGAAAAATCCAAAATGTTCAGAAATTTCGAAAAATTAAAACATTCAGAAAATTAAAAATTCCAAAAATTCAGAAATTCAAAATTTTCGAAAATCCGAAATTTCGAAAAATCTGAAATTTCAAAAATTTCAAAAAATCTGAAAATCCCAAAATTCTAAAAATTCTACATTTTGGAAACCCAAAACTTCGAAAAAGGGAATTTCGAGAAAATCGAAAAATTCGGAAATACAAGAGCTCAAATTTTTCGAAAAATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGAATTATGGAATTTTTGA</pcr_primer_p1>
		<pcr_primer_p2>GAAAGTATTGCATCCGAGTG</pcr_primer_p2>
		<pcr_amplicon_size>700</pcr_amplicon_size>
		<canonical_amplicon>CGGAATTATGGAATTTTTGAATACCTCTAATTTTGAAAGATATAATTCTGCATTTCTCTGTTTTCTCAATTTTTGTTTTTCCAATTTTTCAAAGAATTCTATATTTCTCA</canonical_amplicon>
		<polymorphic_amplicon>CGGAATTATGGAATTTTTGAATACCTCTAATTTTGAAAGATATAATTCTGCATTTCTCTGTTTTCTCAATTTTTGTTTTTCCAATTTTTCRAAGAATTCTATATTTCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25450</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>100493</contig_pos>
        <strand></strand>
        <context>AAGAATTCTA[T/A]ATTTCTCAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATTTCTCTGTTTTCTCAATTTTTGTTTTTCCAATTTTTCAAAGAATTCTA</left_flank>
        <right_flank>ATTTCTCAATTTTCTGGAATTTTTAAAAATTTAAAAATTGTAATTTTCTA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTTTAAAATCCAAAAAAATTCGAAAATTTCAACGATTCTTAACGAAAACTTTTAAAAACATTCAAATATTTGCAAAAATCTGAAATTCAAAAATCCCAAATTTCCTAAAATTTCAAAAATTCTCAAAAATCCAAAAACATTTCAGTTCAAATCTAGAATCACTAAAACTGGAAGGCTATCAGGACGAGTTGTGTTTGGACGATACAATTGGTTTCTTATTGGATACAAACGTCAGCAACTACCGTATCAGTTGCATTTGGACAGGAGTTTCTCAATTCGGTCAATGTCGGGCGGTCCCAGAAATTTATATGAACCGCCCGTTTTCATTTATTGATGAAAACGAGTGGATGGGGAAATTGATGGTATGATTTTTATTTTCAGAATTTCGGAATTTTCGGAATTATGGAATTTTTGAATACCTCTAATTTTGAAAGATATAATTCTGCATTTCTCTGTTTTCTCAATTTTTGTTTTTCCAATTTTTCAAAGAATTCTATATTTCTCAATTTTCTGGAATTTTTAAAAATTTAAAAATTGTAATTTTCTATTTTTCAAAAAAAATTTCCCACATTGCAAAATACAGCATTTTTGAAAATTCGAGATTTCGAAATTCAGAATTTATTGAACTTTTAGAATCTTGGAACTTTTTGGAACAATGGAATTTTGAAATTTCTAAATGTGTGAAAATCTAAAAAAAACTAAATTTTGTGAAATTCAAAAATTCAAAAATTTCGAAAAATCCAAAATGTTCAGAAATTTCGAAAAATTAAAACATTCAGAAAATTAAAAATTCCAAAAATTCAGAAATTCAAAATTTTCGAAAATCCGAAATTTCGAAAAATCTGAAATTTCAAAAATTTCAAAAAATCTGAAAATCCCAAAATTCTAAAAATTCTACATTTTGGAAACCCAAAACTTCGAAAAAGGGAATTTCGAGAAAATCGAAAAATTCGGAAATACAAGAGCTCAAATTTTTCGAAAAATCGGAATTTTCGAT</canonical>
            <polymorphic>TATTTTTAAAATCCAAAAAAATTCGAAAATTTCAACGATTCTTAACGAAAACTTTTAAAAACATTCAAATATTTGCAAAAATCTGAAATTCAAAAATCCCAAATTTCCTAAAATTTCAAAAATTCTCAAAAATCCAAAAACATTTCAGTTCAAATCTAGAATCACTAAAACTGGAAGGCTATCAGGACGAGTTGTGTTTGGACGATACAATTGGTTTCTTATTGGATACAAACGTCAGCAACTACCGTATCAGTTGCATTTGGACAGGAGTTTCTCAATTCGGTCAATGTCGGGCGGTCCCAGAAATTTATATGAACCGCCCGTTTTCATTTATTGATGAAAACGAGTGGATGGGGAAATTGATGGTATGATTTTTATTTTCAGAATTTCGGAATTTTCGGAATTATGGAATTTTTGAATACCTCTAATTTTGAAAGATATAATTCTGCATTTCTCTGTTTTCTCAATTTTTGTTTTTCCAATTTTTCAAAGAATTCTAWATTTCTCAATTTTCTGGAATTTTTAAAAATTTAAAAATTGTAATTTTCTATTTTTCAAAAAAAATTTCCCACATTGCAAAATACAGCATTTTTGAAAATTCGAGATTTCGAAATTCAGAATTTATTGAACTTTTAGAATCTTGGAACTTTTTGGAACAATGGAATTTTGAAATTTCTAAATGTGTGAAAATCTAAAAAAAACTAAATTTTGTGAAATTCAAAAATTCAAAAATTTCGAAAAATCCAAAATGTTCAGAAATTTCGAAAAATTAAAACATTCAGAAAATTAAAAATTCCAAAAATTCAGAAATTCAAAATTTTCGAAAATCCGAAATTTCGAAAAATCTGAAATTTCAAAAATTTCAAAAAATCTGAAAATCCCAAAATTCTAAAAATTCTACATTTTGGAAACCCAAAACTTCGAAAAAGGGAATTTCGAGAAAATCGAAAAATTCGGAAATACAAGAGCTCAAATTTTTCGAAAAATCGGAATTTTCGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCATTTCTCTGTTTTCTCAA</pcr_primer_p1>
		<pcr_primer_p2>GAAAGTATTGCATCCGAGTG</pcr_primer_p2>
		<pcr_amplicon_size>652</pcr_amplicon_size>
		<canonical_amplicon>TGCATTTCTCTGTTTTCTCAATTTTTGTTTTTCCAATTTTTCAAAGAATTCTATATTTCTCAATTTTCTGGAA</canonical_amplicon>
		<polymorphic_amplicon>TGCATTTCTCTGTTTTCTCAATTTTTGTTTTTCCAATTTTTCAAAGAATTCTAWATTTCTCAATTTTCTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25451</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>100567</contig_pos>
        <strand></strand>
        <context>atttCCCACA[T/A]TGCAAAATAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TAAAAATTTAAAAATTGTAATTTTCTATTTTTCAAAAAAAATTTCCCACA</left_flank>
        <right_flank>TGCAAAATACAGCATTTTTGAAAATTCGAGATTTCGAAATTCAGAATTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAAAAATCTGAAATTCAAAAATCCCAAATTTCCTAAAATTTCAAAAATTCTCAAAAATCCAAAAACATTTCAGTTCAAATCTAGAATCACTAAAACTGGAAGGCTATCAGGACGAGTTGTGTTTGGACGATACAATTGGTTTCTTATTGGATACAAACGTCAGCAACTACCGTATCAGTTGCATTTGGACAGGAGTTTCTCAATTCGGTCAATGTCGGGCGGTCCCAGAAATTTATATGAACCGCCCGTTTTCATTTATTGATGAAAACGAGTGGATGGGGAAATTGATGGTATGATTTTTATTTTCAGAATTTCGGAATTTTCGGAATTATGGAATTTTTGAATACCTCTAATTTTGAAAGATATAATTCTGCATTTCTCTGTTTTCTCAATTTTTGTTTTTCCAATTTTTCAAAGAATTCTATATTTCTCAATTTTCTGGAATTTTTAAAAATTTAAAAATTGTAATTTTCTATTTTTCAAAAAAAATTTCCCACATTGCAAAATACAGCATTTTTGAAAATTCGAGATTTCGAAATTCAGAATTTATTGAACTTTTAGAATCTTGGAACTTTTTGGAACAATGGAATTTTGAAATTTCTAAATGTGTGAAAATCTAAAAAAAACTAAATTTTGTGAAATTCAAAAATTCAAAAATTTCGAAAAATCCAAAATGTTCAGAAATTTCGAAAAATTAAAACATTCAGAAAATTAAAAATTCCAAAAATTCAGAAATTCAAAATTTTCGAAAATCCGAAATTTCGAAAAATCTGAAATTTCAAAAATTTCAAAAAATCTGAAAATCCCAAAATTCTAAAAATTCTACATTTTGGAAACCCAAAACTTCGAAAAAGGGAATTTCGAGAAAATCGAAAAATTCGGAAATACAAGAGCTCAAATTTTTCGAAAAATCGGAATTTTCGATTCCAAAATTTTCAGAAATTCAAAAATTTATAGAAAATCGAAAAATTCAAAATTTTCAAATTTCAGTATGTTCGA</canonical>
            <polymorphic>GCAAAAATCTGAAATTCAAAAATCCCAAATTTCCTAAAATTTCAAAAATTCTCAAAAATCCAAAAACATTTCAGTTCAAATCTAGAATCACTAAAACTGGAAGGCTATCAGGACGAGTTGTGTTTGGACGATACAATTGGTTTCTTATTGGATACAAACGTCAGCAACTACCGTATCAGTTGCATTTGGACAGGAGTTTCTCAATTCGGTCAATGTCGGGCGGTCCCAGAAATTTATATGAACCGCCCGTTTTCATTTATTGATGAAAACGAGTGGATGGGGAAATTGATGGTATGATTTTTATTTTCAGAATTTCGGAATTTTCGGAATTATGGAATTTTTGAATACCTCTAATTTTGAAAGATATAATTCTGCATTTCTCTGTTTTCTCAATTTTTGTTTTTCCAATTTTTCAAAGAATTCTATATTTCTCAATTTTCTGGAATTTTTAAAAATTTAAAAATTGTAATTTTCTATTTTTCAAAAAAAATTTCCCACAWTGCAAAATACAGCATTTTTGAAAATTCGAGATTTCGAAATTCAGAATTTATTGAACTTTTAGAATCTTGGAACTTTTTGGAACAATGGAATTTTGAAATTTCTAAATGTGTGAAAATCTAAAAAAAACTAAATTTTGTGAAATTCAAAAATTCAAAAATTTCGAAAAATCCAAAATGTTCAGAAATTTCGAAAAATTAAAACATTCAGAAAATTAAAAATTCCAAAAATTCAGAAATTCAAAATTTTCGAAAATCCGAAATTTCGAAAAATCTGAAATTTCAAAAATTTCAAAAAATCTGAAAATCCCAAAATTCTAAAAATTCTACATTTTGGAAACCCAAAACTTCGAAAAAGGGAATTTCGAGAAAATCGAAAAATTCGGAAATACAAGAGCTCAAATTTTTCGAAAAATCGGAATTTTCGATTCCAAAATTTTCAGAAATTCAAAAATTTATAGAAAATCGAAAAATTCAAAATTTTCAAATTTCAGTATGTTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTTCTCAATTTTTGTTTTTC</pcr_primer_p1>
		<pcr_primer_p2>GAAAGTATTGCATCCGAGTG</pcr_primer_p2>
		<pcr_amplicon_size>642</pcr_amplicon_size>
		<canonical_amplicon>TGTTTTCTCAATTTTTGTTTTTCCAATTTTTCAAAGAATTCTATATTTCTCAATTTTCTGGAATTTTTAAAAATTTAAAAATTGTAATTTTCTATTTTTCAAAAAAAATTTCCCACATTGCAAAATACAGCATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TGTTTTCTCAATTTTTGTTTTTCCAATTTTTCAAAGAATTCTATATTTCTCAATTTTCTGGAATTTTTAAAAATTTAAAAATTGTAATTTTCTATTTTTCAAAAAAAATTTCCCACAWTGCAAAATACAGCATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25452</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>100586</contig_pos>
        <strand></strand>
        <context>ACAGCAtttt[T/C]gaaaattcga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTTTCTATTTTTCAAAAAAAATTTCCCACATTGCAAAATACAGCATTTT</left_flank>
        <right_flank>GAAAATTCGAGATTTCGAAATTCAGAATTTATTGAACTTTTAGAATCTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCCCAAATTTCCTAAAATTTCAAAAATTCTCAAAAATCCAAAAACATTTCAGTTCAAATCTAGAATCACTAAAACTGGAAGGCTATCAGGACGAGTTGTGTTTGGACGATACAATTGGTTTCTTATTGGATACAAACGTCAGCAACTACCGTATCAGTTGCATTTGGACAGGAGTTTCTCAATTCGGTCAATGTCGGGCGGTCCCAGAAATTTATATGAACCGCCCGTTTTCATTTATTGATGAAAACGAGTGGATGGGGAAATTGATGGTATGATTTTTATTTTCAGAATTTCGGAATTTTCGGAATTATGGAATTTTTGAATACCTCTAATTTTGAAAGATATAATTCTGCATTTCTCTGTTTTCTCAATTTTTGTTTTTCCAATTTTTCAAAGAATTCTATATTTCTCAATTTTCTGGAATTTTTAAAAATTTAAAAATTGTAATTTTCTATTTTTCAAAAAAAATTTCCCACATTGCAAAATACAGCATTTTTGAAAATTCGAGATTTCGAAATTCAGAATTTATTGAACTTTTAGAATCTTGGAACTTTTTGGAACAATGGAATTTTGAAATTTCTAAATGTGTGAAAATCTAAAAAAAACTAAATTTTGTGAAATTCAAAAATTCAAAAATTTCGAAAAATCCAAAATGTTCAGAAATTTCGAAAAATTAAAACATTCAGAAAATTAAAAATTCCAAAAATTCAGAAATTCAAAATTTTCGAAAATCCGAAATTTCGAAAAATCTGAAATTTCAAAAATTTCAAAAAATCTGAAAATCCCAAAATTCTAAAAATTCTACATTTTGGAAACCCAAAACTTCGAAAAAGGGAATTTCGAGAAAATCGAAAAATTCGGAAATACAAGAGCTCAAATTTTTCGAAAAATCGGAATTTTCGATTCCAAAATTTTCAGAAATTCAAAAATTTATAGAAAATCGAAAAATTCAAAATTTTCAAATTTCAGTATGTTCGATCTGCACTCGGATGCAATA</canonical>
            <polymorphic>AAATCCCAAATTTCCTAAAATTTCAAAAATTCTCAAAAATCCAAAAACATTTCAGTTCAAATCTAGAATCACTAAAACTGGAAGGCTATCAGGACGAGTTGTGTTTGGACGATACAATTGGTTTCTTATTGGATACAAACGTCAGCAACTACCGTATCAGTTGCATTTGGACAGGAGTTTCTCAATTCGGTCAATGTCGGGCGGTCCCAGAAATTTATATGAACCGCCCGTTTTCATTTATTGATGAAAACGAGTGGATGGGGAAATTGATGGTATGATTTTTATTTTCAGAATTTCGGAATTTTCGGAATTATGGAATTTTTGAATACCTCTAATTTTGAAAGATATAATTCTGCATTTCTCTGTTTTCTCAATTTTTGTTTTTCCAATTTTTCAAAGAATTCTATATTTCTCAATTTTCTGGAATTTTTAAAAATTTAAAAATTGTAATTTTCTATTTTTCAAAAAAAATTTCCCACATTGCAAAATACAGCATTTTYGAAAATTCGAGATTTCGAAATTCAGAATTTATTGAACTTTTAGAATCTTGGAACTTTTTGGAACAATGGAATTTTGAAATTTCTAAATGTGTGAAAATCTAAAAAAAACTAAATTTTGTGAAATTCAAAAATTCAAAAATTTCGAAAAATCCAAAATGTTCAGAAATTTCGAAAAATTAAAACATTCAGAAAATTAAAAATTCCAAAAATTCAGAAATTCAAAATTTTCGAAAATCCGAAATTTCGAAAAATCTGAAATTTCAAAAATTTCAAAAAATCTGAAAATCCCAAAATTCTAAAAATTCTACATTTTGGAAACCCAAAACTTCGAAAAAGGGAATTTCGAGAAAATCGAAAAATTCGGAAATACAAGAGCTCAAATTTTTCGAAAAATCGGAATTTTCGATTCCAAAATTTTCAGAAATTCAAAAATTTATAGAAAATCGAAAAATTCAAAATTTTCAAATTTCAGTATGTTCGATCTGCACTCGGATGCAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTTCTCAATTTTTGTTTTTC</pcr_primer_p1>
		<pcr_primer_p2>GAAAGTATTGCATCCGAGTG</pcr_primer_p2>
		<pcr_amplicon_size>642</pcr_amplicon_size>
		<canonical_amplicon>TGTTTTCTCAATTTTTGTTTTTCCAATTTTTCAAAGAATTCTATATTTCTCAATTTTCTGGAATTTTTAAAAATTTAAAAATTGTAATTTTCTATTTTTCAAAAAAAATTTCCCACATTGCAAAATACAGCATTTTTGAAAATTCGAGATTTCGAA</canonical_amplicon>
		<polymorphic_amplicon>TGTTTTCTCAATTTTTGTTTTTCCAATTTTTCAAAGAATTCTATATTTCTCAATTTTCTGGAATTTTTAAAAATTTAAAAATTGTAATTTTCTATTTTTCAAAAAAAATTTCCCACATTGCAAAATACAGCATTTTYGAAAATTCGAGATTTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25453</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>100744</contig_pos>
        <strand></strand>
        <context>aatccaaaat[G/T]ttcagaaatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTAAATTTTGTGAAATTCAAAAATTCAAAAATTTCGAAAAATCCAAAAT</left_flank>
        <right_flank>TTCAGAAATTTCGAAAAATTAAAACATTCAGAAAATTAAAAATTCCAAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTGCATTTGGACAGGAGTTTCTCAATTCGGTCAATGTCGGGCGGTCCCAGAAATTTATATGAACCGCCCGTTTTCATTTATTGATGAAAACGAGTGGATGGGGAAATTGATGGTATGATTTTTATTTTCAGAATTTCGGAATTTTCGGAATTATGGAATTTTTGAATACCTCTAATTTTGAAAGATATAATTCTGCATTTCTCTGTTTTCTCAATTTTTGTTTTTCCAATTTTTCAAAGAATTCTATATTTCTCAATTTTCTGGAATTTTTAAAAATTTAAAAATTGTAATTTTCTATTTTTCAAAAAAAATTTCCCACATTGCAAAATACAGCATTTTTGAAAATTCGAGATTTCGAAATTCAGAATTTATTGAACTTTTAGAATCTTGGAACTTTTTGGAACAATGGAATTTTGAAATTTCTAAATGTGTGAAAATCTAAAAAAAACTAAATTTTGTGAAATTCAAAAATTCAAAAATTTCGAAAAATCCAAAATGTTCAGAAATTTCGAAAAATTAAAACATTCAGAAAATTAAAAATTCCAAAAATTCAGAAATTCAAAATTTTCGAAAATCCGAAATTTCGAAAAATCTGAAATTTCAAAAATTTCAAAAAATCTGAAAATCCCAAAATTCTAAAAATTCTACATTTTGGAAACCCAAAACTTCGAAAAAGGGAATTTCGAGAAAATCGAAAAATTCGGAAATACAAGAGCTCAAATTTTTCGAAAAATCGGAATTTTCGATTCCAAAATTTTCAGAAATTCAAAAATTTATAGAAAATCGAAAAATTCAAAATTTTCAAATTTCAGTATGTTCGATCTGCACTCGGATGCAATACTTTCGATAGAGTCTATGAGATGACAAGACAAACTTTGAAAAATGACGAAATTTCAAATTCCACAACTACAAAAACTACAAGAAAAGTGATGGTGCGCAGAAACTACAGTAACCCGCGAAGAAGCCCCTCCTACATTTTGGAATCAACGGAACTGTTC</canonical>
            <polymorphic>AGTTGCATTTGGACAGGAGTTTCTCAATTCGGTCAATGTCGGGCGGTCCCAGAAATTTATATGAACCGCCCGTTTTCATTTATTGATGAAAACGAGTGGATGGGGAAATTGATGGTATGATTTTTATTTTCAGAATTTCGGAATTTTCGGAATTATGGAATTTTTGAATACCTCTAATTTTGAAAGATATAATTCTGCATTTCTCTGTTTTCTCAATTTTTGTTTTTCCAATTTTTCAAAGAATTCTATATTTCTCAATTTTCTGGAATTTTTAAAAATTTAAAAATTGTAATTTTCTATTTTTCAAAAAAAATTTCCCACATTGCAAAATACAGCATTTTTGAAAATTCGAGATTTCGAAATTCAGAATTTATTGAACTTTTAGAATCTTGGAACTTTTTGGAACAATGGAATTTTGAAATTTCTAAATGTGTGAAAATCTAAAAAAAACTAAATTTTGTGAAATTCAAAAATTCAAAAATTTCGAAAAATCCAAAATKTTCAGAAATTTCGAAAAATTAAAACATTCAGAAAATTAAAAATTCCAAAAATTCAGAAATTCAAAATTTTCGAAAATCCGAAATTTCGAAAAATCTGAAATTTCAAAAATTTCAAAAAATCTGAAAATCCCAAAATTCTAAAAATTCTACATTTTGGAAACCCAAAACTTCGAAAAAGGGAATTTCGAGAAAATCGAAAAATTCGGAAATACAAGAGCTCAAATTTTTCGAAAAATCGGAATTTTCGATTCCAAAATTTTCAGAAATTCAAAAATTTATAGAAAATCGAAAAATTCAAAATTTTCAAATTTCAGTATGTTCGATCTGCACTCGGATGCAATACTTTCGATAGAGTCTATGAGATGACAAGACAAACTTTGAAAAATGACGAAATTTCAAATTCCACAACTACAAAAACTACAAGAAAAGTGATGGTGCGCAGAAACTACAGTAACCCGCGAAGAAGCCCCTCCTACATTTTGGAATCAACGGAACTGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTAAATGTGTGAAAATCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAAGTATTGCATCCGAGTG</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>TTCTAAATGTGTGAAAATCTAAAAAAAACTAAATTTTGTGAAATTCAAAAATTCAAAAATTTCGAAAAATCCAAAATGTTCAGAAATTTCGAAAAATTAAAACATTCAGAAAATTAAAAATTCCAAAAATTCAGAAATTCAAAATTTTCGAAAATCCGAAATTTCGAAAAATCTGAAATTTCAAAAATTTCAAAAAATCTGAAAATCCCAAAATTCTAAAAATTCTACATTTTGGAAACCCAAAACTTCGAAAAAGGGAATTTCGAGAAAATCGAAAAATTCGGAAATACAAGAGCTCAAATTTTTCGAAAAATCGGAATTTTCGATTCCAAAATTTTCAGAAATTCAAAAATTTATAGAAAATCGAAAAATTCAAAATTTTCAAATTTCAGTATGTTCGATCTGCACTCGGATGCAATACTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTCTAAATGTGTGAAAATCTAAAAAAAACTAAATTTTGTGAAATTCAAAAATTCAAAAATTTCGAAAAATCCAAAATKTTCAGAAATTTCGAAAAATTAAAACATTCAGAAAATTAAAAATTCCAAAAATTCAGAAATTCAAAATTTTCGAAAATCCGAAATTTCGAAAAATCTGAAATTTCAAAAATTTCAAAAAATCTGAAAATCCCAAAATTCTAAAAATTCTACATTTTGGAAACCCAAAACTTCGAAAAAGGGAATTTCGAGAAAATCGAAAAATTCGGAAATACAAGAGCTCAAATTTTTCGAAAAATCGGAATTTTCGATTCCAAAATTTTCAGAAATTCAAAAATTTATAGAAAATCGAAAAATTCAAAATTTTCAAATTTCAGTATGTTCGATCTGCACTCGGATGCAATACTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25454</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>102855</contig_pos>
        <strand>+</strand>
        <context>TAGCTAACTG[A/G]AAAAAAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCTTTCGATAAAGCCGAGAAGATCCATTGAATCGGTTCTAGCTAACTG</left_flank>
        <right_flank>AAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACGACAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACATTTCAAATGTATACTTTCGGCAAATTTTGCAAAAAAATTTTTAAAAAAATTTCGAAAAAAAAAACTTTTTTTTGACCAAAAATTCTGAAAATTTTCAGAATCAAATTTTTAGACTTCAAACTTTTCAGGGGAAGTTTTTAACAATAAATTCAATTTTCGAGCTTATTTTCACCTCAAAAGTGTCTGGAAAGTAGACCAAAAGCGTATCAGAAATCGGCTGAAAAATGCTTCCAGAACTTCCAGAAGTCGATGGAACTTGTGGAAGACTAGGTGGCGCTTCTGGAGCCGAGAAATCTGCAGATTCCGCTTCAGAATTCGGCCATTCTAGAAATTCTGAATCCACGTGGATTGTTTGATGATAGCTGACAGCCACTTTGGGAGGATCTGGGGGATCTGAAAGGTTTTTTGATCAACACAATTTTTTTCTTCAACAAACCATCTCCAATTCTTTCGATAAAGCCGAGAAGATCCATTGAATCGGTTCTAGCTAACTGAAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACGACAAAAACGATCTAATATTGCTTGAAATTTCGCAATTCCAAAGGCAAAGACACTGAAATCGATAAATTCAAATTCTGACATATTTAACTAAGCTAAAAACATGCAAAAAACCACAAAATTGAATTTTTCAGAGCCATTTCTAGATTCTCAAACTATTTTCCCCATTATTTCCCTCTTTTAGGGGTCCTGGCCGCGTGGCCTAGCGTTTTTCTAGTCCGCGACCCAGTGAATTGGCGGGGTGTTTGCCCTTTCTCGCATTTTTCTGTCTCTGACATTGATTTTTTGTTGTGAAAATCCGCAAAAATTATCTAAAAAAAATAATAATAAAAATACCGTAATTTAAAGGAGCATAAGCTAAAGAGTTTTGAGGACTTCGCAACGAAAACCGTACCCAGCGCGAAAAATCCACGTTTGAACTTTTTTTCTGTCGATTGTCAGCTGGTTTTTAGCGATTTT</canonical>
            <polymorphic>TCACATTTCAAATGTATACTTTCGGCAAATTTTGCAAAAAAATTTTTAAAAAAATTTCGAAAAAAAAAACTTTTTTTTGACCAAAAATTCTGAAAATTTTCAGAATCAAATTTTTAGACTTCAAACTTTTCAGGGGAAGTTTTTAACAATAAATTCAATTTTCGAGCTTATTTTCACCTCAAAAGTGTCTGGAAAGTAGACCAAAAGCGTATCAGAAATCGGCTGAAAAATGCTTCCAGAACTTCCAGAAGTCGATGGAACTTGTGGAAGACTAGGTGGCGCTTCTGGAGCCGAGAAATCTGCAGATTCCGCTTCAGAATTCGGCCATTCTAGAAATTCTGAATCCACGTGGATTGTTTGATGATAGCTGACAGCCACTTTGGGAGGATCTGGGGGATCTGAAAGGTTTTTTGATCAACACAATTTTTTTCTTCAACAAACCATCTCCAATTCTTTCGATAAAGCCGAGAAGATCCATTGAATCGGTTCTAGCTAACTGRAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACGACAAAAACGATCTAATATTGCTTGAAATTTCGCAATTCCAAAGGCAAAGACACTGAAATCGATAAATTCAAATTCTGACATATTTAACTAAGCTAAAAACATGCAAAAAACCACAAAATTGAATTTTTCAGAGCCATTTCTAGATTCTCAAACTATTTTCCCCATTATTTCCCTCTTTTAGGGGTCCTGGCCGCGTGGCCTAGCGTTTTTCTAGTCCGCGACCCAGTGAATTGGCGGGGTGTTTGCCCTTTCTCGCATTTTTCTGTCTCTGACATTGATTTTTTGTTGTGAAAATCCGCAAAAATTATCTAAAAAAAATAATAATAAAAATACCGTAATTTAAAGGAGCATAAGCTAAAGAGTTTTGAGGACTTCGCAACGAAAACCGTACCCAGCGCGAAAAATCCACGTTTGAACTTTTTTTCTGTCGATTGTCAGCTGGTTTTTAGCGATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTGTTTGATGATAGCTGAC</pcr_primer_p1>
		<pcr_primer_p2>TTCAAGCAATATTAGATCGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>220</pcr_amplicon_size>
		<canonical_amplicon>GGATTGTTTGATGATAGCTGACAGCCACTTTGGGAGGATCTGGGGGATCTGAAAGGTTTTTTGATCAACACAATTTTTTTCTTCAACAAACCATCTCCAATTCTTTCGATAAAGCCGAGAAGATCCATTGAATCGGTTCTAGCTAACTGAAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACGACAAAAACGATCTAATATTGCTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GGATTGTTTGATGATAGCTGACAGCCACTTTGGGAGGATCTGGGGGATCTGAAAGGTTTTTTGATCAACACAATTTTTTTCTTCAACAAACCATCTCCAATTCTTTCGATAAAGCCGAGAAGATCCATTGAATCGGTTCTAGCTAACTGRAAAAAAATTTTCTTATATTTTTTCTTGAATTTTTATATAGGACGACAAAAACGATCTAATATTGCTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25455</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>141610</contig_pos>
        <strand>+</strand>
        <context>TCAAAATGAT[A/T]GGATTTGAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTAGTTCATTTTGGGATCGATATTTTTCGACCCACTAAAATCAAAATGAT</left_flank>
        <right_flank>GGATTTGAAGAGCACCAAAAGATGGTTCAAAGTAAAAAGCTGTATCTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAGGTCGGACTTCCAGCGAAATCCGGAGTCTCCGGTATAATGATCGTTGTGATTCCGAACGTGATGGGCATCGCTCTCTACTCTCCACCACTCGACAAGACTGGAAACTCGTGTCGTGGTGTTGCATTCTGTCGTCAACTCATCGACCAGTTCAACTTCCACAACTACGATTCGCTGCTGCATCCGGACGACTCGCGTAAAATCGATCCGCGACGAAAGATCGGTCCACGTGAGAACGAGACGATTGTGCAGGTCAGATTAGTCGAAGAATTGAGTTTTTCTTTTGCCGACTAAACTTGACTGAATATTGATTCTTTTTGGGGTTAAAATGGGTTAAAAATGATTATCATTGACCTAAAATTATCATTCATTACTTTTTTTCTACCGTTTTTTCTTTTCACGGTTTAAGATGGTTTCAGAAATGATGTTTTTTGTTTGAAATTTTTCCTAGTTCATTTTGGGATCGATATTTTTCGACCCACTAAAATCAAAATGATAGGATTTGAAGAGCACCAAAAGATGGTTCAAAGTAAAAAGCTGTATCTTCTCTATGAGAAAAGTTAAAAGCTATGACCTTTTTCATAGTCTTGGTACAGCTTTTTAAATAGCCTCATCTTGTAGTGCTCTTCAATTTCTACAATATCGATTTTAGTAGGTTCGAAAGTATTGATCCTGAAAAAAGTCATGGCCGTTTTGAGCTCTTTCATTTGTCGGCATTTTTAACCTTCATTTACTCCCTTCTAACACCTTCTTTTCACTGACCTAACTTTCCACAAATCCCTGAATTTCTAGGTCATGTACGCGGCGAAGAACGGAGATTTGGATTCGCTCCGTCGAATGTTCATGCAAGGAGCCGATCTGAAAACAGCCGACTACGATAATCGTACGGCTCTGCACGTGGCAGCCGCCGAGGGACGAATCAAAGTTTGCAAGTTTTTGGTGAATATCGTTGGAATTCCGCATGATGTCAAGGATAGGTACGTTTTCTAGGCCATGTG</canonical>
            <polymorphic>TCCAGGTCGGACTTCCAGCGAAATCCGGAGTCTCCGGTATAATGATCGTTGTGATTCCGAACGTGATGGGCATCGCTCTCTACTCTCCACCACTCGACAAGACTGGAAACTCGTGTCGTGGTGTTGCATTCTGTCGTCAACTCATCGACCAGTTCAACTTCCACAACTACGATTCGCTGCTGCATCCGGACGACTCGCGTAAAATCGATCCGCGACGAAAGATCGGTCCACGTGAGAACGAGACGATTGTGCAGGTCAGATTAGTCGAAGAATTGAGTTTTTCTTTTGCCGACTAAACTTGACTGAATATTGATTCTTTTTGGGGTTAAAATGGGTTAAAAATGATTATCATTGACCTAAAATTATCATTCATTACTTTTTTTCTACCGTTTTTTCTTTTCACGGTTTAAGATGGTTTCAGAAATGATGTTTTTTGTTTGAAATTTTTCCTAGTTCATTTTGGGATCGATATTTTTCGACCCACTAAAATCAAAATGATWGGATTTGAAGAGCACCAAAAGATGGTTCAAAGTAAAAAGCTGTATCTTCTCTATGAGAAAAGTTAAAAGCTATGACCTTTTTCATAGTCTTGGTACAGCTTTTTAAATAGCCTCATCTTGTAGTGCTCTTCAATTTCTACAATATCGATTTTAGTAGGTTCGAAAGTATTGATCCTGAAAAAAGTCATGGCCGTTTTGAGCTCTTTCATTTGTCGGCATTTTTAACCTTCATTTACTCCCTTCTAACACCTTCTTTTCACTGACCTAACTTTCCACAAATCCCTGAATTTCTAGGTCATGTACGCGGCGAAGAACGGAGATTTGGATTCGCTCCGTCGAATGTTCATGCAAGGAGCCGATCTGAAAACAGCCGACTACGATAATCGTACGGCTCTGCACGTGGCAGCCGCCGAGGGACGAATCAAAGTTTGCAAGTTTTTGGTGAATATCGTTGGAATTCCGCATGATGTCAAGGATAGGTACGTTTTCTAGGCCATGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTAAAATGGGTTAAAAATGAT</pcr_primer_p1>
		<pcr_primer_p2>AGGTCATAGCTTTTAACTTTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>GGTTAAAATGGGTTAAAAATGATTATCATTGACCTAAAATTATCATTCATTACTTTTTTTCTACCGTTTTTTCTTTTCACGGTTTAAGATGGTTTCAGAAATGATGTTTTTTGTTTGAAATTTTTCCTAGTTCATTTTGGGATCGATATTTTTCGACCCACTAAAATCAAAATGATAGGATTTGAAGAGCACCAAAAGATGGTTCAAAGTAAAAAGCTGTATCTTCTCTATGAGAAAAGTTAAAAGCTATGACCT</canonical_amplicon>
		<polymorphic_amplicon>GGTTAAAATGGGTTAAAAATGATTATCATTGACCTAAAATTATCATTCATTACTTTTTTTCTACCGTTTTTTCTTTTCACGGTTTAAGATGGTTTCAGAAATGATGTTTTTTGTTTGAAATTTTTCCTAGTTCATTTTGGGATCGATATTTTTCGACCCACTAAAATCAAAATGATWGGATTTGAAGAGCACCAAAAGATGGTTCAAAGTAAAAAGCTGTATCTTCTCTATGAGAAAAGTTAAAAGCTATGACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25456</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>141638</contig_pos>
        <strand>+</strand>
        <context>AAAGATGGTT[C/T]AAAGTAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACCCACTAAAATCAAAATGATAGGATTTGAAGAGCACCAAAAGATGGTT</left_flank>
        <right_flank>AAAGTAAAAAGCTGTATCTTCTCTATGAGAAAAGTTAAAAGCTATGACCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCTCCGGTATAATGATCGTTGTGATTCCGAACGTGATGGGCATCGCTCTCTACTCTCCACCACTCGACAAGACTGGAAACTCGTGTCGTGGTGTTGCATTCTGTCGTCAACTCATCGACCAGTTCAACTTCCACAACTACGATTCGCTGCTGCATCCGGACGACTCGCGTAAAATCGATCCGCGACGAAAGATCGGTCCACGTGAGAACGAGACGATTGTGCAGGTCAGATTAGTCGAAGAATTGAGTTTTTCTTTTGCCGACTAAACTTGACTGAATATTGATTCTTTTTGGGGTTAAAATGGGTTAAAAATGATTATCATTGACCTAAAATTATCATTCATTACTTTTTTTCTACCGTTTTTTCTTTTCACGGTTTAAGATGGTTTCAGAAATGATGTTTTTTGTTTGAAATTTTTCCTAGTTCATTTTGGGATCGATATTTTTCGACCCACTAAAATCAAAATGATAGGATTTGAAGAGCACCAAAAGATGGTTCAAAGTAAAAAGCTGTATCTTCTCTATGAGAAAAGTTAAAAGCTATGACCTTTTTCATAGTCTTGGTACAGCTTTTTAAATAGCCTCATCTTGTAGTGCTCTTCAATTTCTACAATATCGATTTTAGTAGGTTCGAAAGTATTGATCCTGAAAAAAGTCATGGCCGTTTTGAGCTCTTTCATTTGTCGGCATTTTTAACCTTCATTTACTCCCTTCTAACACCTTCTTTTCACTGACCTAACTTTCCACAAATCCCTGAATTTCTAGGTCATGTACGCGGCGAAGAACGGAGATTTGGATTCGCTCCGTCGAATGTTCATGCAAGGAGCCGATCTGAAAACAGCCGACTACGATAATCGTACGGCTCTGCACGTGGCAGCCGCCGAGGGACGAATCAAAGTTTGCAAGTTTTTGGTGAATATCGTTGGAATTCCGCATGATGTCAAGGATAGGTACGTTTTCTAGGCCATGTGTTTGAATTTCCTAAAGAGGTGCCGTTCT</canonical>
            <polymorphic>AGTCTCCGGTATAATGATCGTTGTGATTCCGAACGTGATGGGCATCGCTCTCTACTCTCCACCACTCGACAAGACTGGAAACTCGTGTCGTGGTGTTGCATTCTGTCGTCAACTCATCGACCAGTTCAACTTCCACAACTACGATTCGCTGCTGCATCCGGACGACTCGCGTAAAATCGATCCGCGACGAAAGATCGGTCCACGTGAGAACGAGACGATTGTGCAGGTCAGATTAGTCGAAGAATTGAGTTTTTCTTTTGCCGACTAAACTTGACTGAATATTGATTCTTTTTGGGGTTAAAATGGGTTAAAAATGATTATCATTGACCTAAAATTATCATTCATTACTTTTTTTCTACCGTTTTTTCTTTTCACGGTTTAAGATGGTTTCAGAAATGATGTTTTTTGTTTGAAATTTTTCCTAGTTCATTTTGGGATCGATATTTTTCGACCCACTAAAATCAAAATGATAGGATTTGAAGAGCACCAAAAGATGGTTYAAAGTAAAAAGCTGTATCTTCTCTATGAGAAAAGTTAAAAGCTATGACCTTTTTCATAGTCTTGGTACAGCTTTTTAAATAGCCTCATCTTGTAGTGCTCTTCAATTTCTACAATATCGATTTTAGTAGGTTCGAAAGTATTGATCCTGAAAAAAGTCATGGCCGTTTTGAGCTCTTTCATTTGTCGGCATTTTTAACCTTCATTTACTCCCTTCTAACACCTTCTTTTCACTGACCTAACTTTCCACAAATCCCTGAATTTCTAGGTCATGTACGCGGCGAAGAACGGAGATTTGGATTCGCTCCGTCGAATGTTCATGCAAGGAGCCGATCTGAAAACAGCCGACTACGATAATCGTACGGCTCTGCACGTGGCAGCCGCCGAGGGACGAATCAAAGTTTGCAAGTTTTTGGTGAATATCGTTGGAATTCCGCATGATGTCAAGGATAGGTACGTTTTCTAGGCCATGTGTTTGAATTTCCTAAAGAGGTGCCGTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATATTTTTCGACCCACTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GACAAATGAAAGAGCTCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GATATTTTTCGACCCACTAAAATCAAAATGATAGGATTTGAAGAGCACCAAAAGATGGTTCAAAGTAAAAAGCTGTATCTTCTCTATGAGAAAAGTTAAAAGCTATGACCTTTTTCATAGTCTTGGTACAGCTTTTTAAATAGCCTCATCTTGTAGTGCTCTTCAATTTCTACAATATCGATTTTAGTAGGTTCGAAAGTATTGATCCTGAAAAAAGTCATGGCCGTTTTGAGCTCTTTCATTTGTC</canonical_amplicon>
		<polymorphic_amplicon>GATATTTTTCGACCCACTAAAATCAAAATGATAGGATTTGAAGAGCACCAAAAGATGGTTYAAAGTAAAAAGCTGTATCTTCTCTATGAGAAAAGTTAAAAGCTATGACCTTTTTCATAGTCTTGGTACAGCTTTTTAAATAGCCTCATCTTGTAGTGCTCTTCAATTTCTACAATATCGATTTTAGTAGGTTCGAAAGTATTGATCCTGAAAAAAGTCATGGCCGTTTTGAGCTCTTTCATTTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25457</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>141697</contig_pos>
        <strand>+</strand>
        <context>CTTTTTCATA[G/T]TCTTGGTACA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGCTGTATCTTCTCTATGAGAAAAGTTAAAAGCTATGACCTTTTTCATA</left_flank>
        <right_flank>TCTTGGTACAGCTTTTTAAATAGCCTCATCTTGTAGTGCTCTTCAATTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACCACTCGACAAGACTGGAAACTCGTGTCGTGGTGTTGCATTCTGTCGTCAACTCATCGACCAGTTCAACTTCCACAACTACGATTCGCTGCTGCATCCGGACGACTCGCGTAAAATCGATCCGCGACGAAAGATCGGTCCACGTGAGAACGAGACGATTGTGCAGGTCAGATTAGTCGAAGAATTGAGTTTTTCTTTTGCCGACTAAACTTGACTGAATATTGATTCTTTTTGGGGTTAAAATGGGTTAAAAATGATTATCATTGACCTAAAATTATCATTCATTACTTTTTTTCTACCGTTTTTTCTTTTCACGGTTTAAGATGGTTTCAGAAATGATGTTTTTTGTTTGAAATTTTTCCTAGTTCATTTTGGGATCGATATTTTTCGACCCACTAAAATCAAAATGATAGGATTTGAAGAGCACCAAAAGATGGTTCAAAGTAAAAAGCTGTATCTTCTCTATGAGAAAAGTTAAAAGCTATGACCTTTTTCATAGTCTTGGTACAGCTTTTTAAATAGCCTCATCTTGTAGTGCTCTTCAATTTCTACAATATCGATTTTAGTAGGTTCGAAAGTATTGATCCTGAAAAAAGTCATGGCCGTTTTGAGCTCTTTCATTTGTCGGCATTTTTAACCTTCATTTACTCCCTTCTAACACCTTCTTTTCACTGACCTAACTTTCCACAAATCCCTGAATTTCTAGGTCATGTACGCGGCGAAGAACGGAGATTTGGATTCGCTCCGTCGAATGTTCATGCAAGGAGCCGATCTGAAAACAGCCGACTACGATAATCGTACGGCTCTGCACGTGGCAGCCGCCGAGGGACGAATCAAAGTTTGCAAGTTTTTGGTGAATATCGTTGGAATTCCGCATGATGTCAAGGATAGGTACGTTTTCTAGGCCATGTGTTTGAATTTCCTAAAGAGGTGCCGTTCTATTAAAGTATTTACTGTATTTTGAACCACAGTACACCATTTCCAAACATTTTCCAGATG</canonical>
            <polymorphic>CACCACTCGACAAGACTGGAAACTCGTGTCGTGGTGTTGCATTCTGTCGTCAACTCATCGACCAGTTCAACTTCCACAACTACGATTCGCTGCTGCATCCGGACGACTCGCGTAAAATCGATCCGCGACGAAAGATCGGTCCACGTGAGAACGAGACGATTGTGCAGGTCAGATTAGTCGAAGAATTGAGTTTTTCTTTTGCCGACTAAACTTGACTGAATATTGATTCTTTTTGGGGTTAAAATGGGTTAAAAATGATTATCATTGACCTAAAATTATCATTCATTACTTTTTTTCTACCGTTTTTTCTTTTCACGGTTTAAGATGGTTTCAGAAATGATGTTTTTTGTTTGAAATTTTTCCTAGTTCATTTTGGGATCGATATTTTTCGACCCACTAAAATCAAAATGATAGGATTTGAAGAGCACCAAAAGATGGTTCAAAGTAAAAAGCTGTATCTTCTCTATGAGAAAAGTTAAAAGCTATGACCTTTTTCATAKTCTTGGTACAGCTTTTTAAATAGCCTCATCTTGTAGTGCTCTTCAATTTCTACAATATCGATTTTAGTAGGTTCGAAAGTATTGATCCTGAAAAAAGTCATGGCCGTTTTGAGCTCTTTCATTTGTCGGCATTTTTAACCTTCATTTACTCCCTTCTAACACCTTCTTTTCACTGACCTAACTTTCCACAAATCCCTGAATTTCTAGGTCATGTACGCGGCGAAGAACGGAGATTTGGATTCGCTCCGTCGAATGTTCATGCAAGGAGCCGATCTGAAAACAGCCGACTACGATAATCGTACGGCTCTGCACGTGGCAGCCGCCGAGGGACGAATCAAAGTTTGCAAGTTTTTGGTGAATATCGTTGGAATTCCGCATGATGTCAAGGATAGGTACGTTTTCTAGGCCATGTGTTTGAATTTCCTAAAGAGGTGCCGTTCTATTAAAGTATTTACTGTATTTTGAACCACAGTACACCATTTCCAAACATTTTCCAGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATATTTTTCGACCCACTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GACAAATGAAAGAGCTCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GATATTTTTCGACCCACTAAAATCAAAATGATAGGATTTGAAGAGCACCAAAAGATGGTTCAAAGTAAAAAGCTGTATCTTCTCTATGAGAAAAGTTAAAAGCTATGACCTTTTTCATAGTCTTGGTACAGCTTTTTAAATAGCCTCATCTTGTAGTGCTCTTCAATTTCTACAATATCGATTTTAGTAGGTTCGAAAGTATTGATCCTGAAAAAAGTCATGGCCGTTTTGAGCTCTTTCATTTGTC</canonical_amplicon>
		<polymorphic_amplicon>GATATTTTTCGACCCACTAAAATCAAAATGATAGGATTTGAAGAGCACCAAAAGATGGTTCAAAGTAAAAAGCTGTATCTTCTCTATGAGAAAAGTTAAAAGCTATGACCTTTTTCATAKTCTTGGTACAGCTTTTTAAATAGCCTCATCTTGTAGTGCTCTTCAATTTCTACAATATCGATTTTAGTAGGTTCGAAAGTATTGATCCTGAAAAAAGTCATGGCCGTTTTGAGCTCTTTCATTTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25458</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>201484</contig_pos>
        <strand>+</strand>
        <context>TTCTTGCAAC[G/T]TTTTGAATTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCTCAATTTCCTGGATTTGGAATTCCAAAACATTCGTAGTTCTTGCAAC</left_flank>
        <right_flank>TTTTGAATTCTGAAATTTCGGCATTTTGAAAACTTTTGGAAGCTGTTATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTTGGTAGGTCAAAAATTTGATCAGTGACTCCCAAATGTGCTCTACCATAATGTCCTCGAATTTCTAATTTTTTATGAAGTCGCTTTTTTAAAGGTTTTTTTTTTGATTGACCAACTGGCCGTTAGAAATAGAATCATTCATTTTGCAACCTACTTCATTATCTCGCAGTGCACGCACCGATGCATCATATCTTACGCGAAATTTTGAAAAAATTCGCATGTTTTCAGCCAATCACCAGTTCTGCCGCACCAACCACAGTTACTCCAATCGACTTGGTAAACAGTTTAATTTTTGAAAAATTATACTTTTTCAATTTTTCCAGCCACCAATCTACGAGCAAACTCCAGTCGATTTGCCACCAGTGAGTTTTTTTCCGACTTTTTTGAATTTGGAATCTTTTGAAAATTTTGCAAAAAAATTTCTGGAATCTCGAAAATTTTCGACGTTCTCAATTTCCTGGATTTGGAATTCCAAAACATTCGTAGTTCTTGCAACGTTTTGAATTCTGAAATTTCGGCATTTTGAAAACTTTTGGAAGCTGTTATTTTTGAAGTTTCAGGATTTTTGAATTTCACCTAAATTTTCCTGAAATTTCAGAAATTCCCGAATTTCCGAAATATTGAACTTTTGTGATAAAGAAAGTTTTTTTTTCAGATCTTCGAAACCCCAGTGACTCTGCCACCAGTAAGTTGGATAGATCCGATTGTCTACTAGAGAATTTGAGAAAAAATTTGAATAAAAATTTTTGAGAAGGGCAAAACGAAAATTACATTTTTTTAGAATTTGAAATTTTCAGATTTTGAATGACACCTCAGGAAAATCGTCATCGTCTTCTTCTTCTTCCTCATCATCCTCTTCTGAGGAACACAAGGTAGGACATCTGGGAATACAGACACACAGATTTTTTCTAGAATTTTCGAAGTTCCGAAAAATCCAAGTTCTCTGGACTGCTAAAAATTTCGGAACTTCCAATGTATCCTGAATTTCTGAATTTCT</canonical>
            <polymorphic>AAACTTGGTAGGTCAAAAATTTGATCAGTGACTCCCAAATGTGCTCTACCATAATGTCCTCGAATTTCTAATTTTTTATGAAGTCGCTTTTTTAAAGGTTTTTTTTTTGATTGACCAACTGGCCGTTAGAAATAGAATCATTCATTTTGCAACCTACTTCATTATCTCGCAGTGCACGCACCGATGCATCATATCTTACGCGAAATTTTGAAAAAATTCGCATGTTTTCAGCCAATCACCAGTTCTGCCGCACCAACCACAGTTACTCCAATCGACTTGGTAAACAGTTTAATTTTTGAAAAATTATACTTTTTCAATTTTTCCAGCCACCAATCTACGAGCAAACTCCAGTCGATTTGCCACCAGTGAGTTTTTTTCCGACTTTTTTGAATTTGGAATCTTTTGAAAATTTTGCAAAAAAATTTCTGGAATCTCGAAAATTTTCGACGTTCTCAATTTCCTGGATTTGGAATTCCAAAACATTCGTAGTTCTTGCAACKTTTTGAATTCTGAAATTTCGGCATTTTGAAAACTTTTGGAAGCTGTTATTTTTGAAGTTTCAGGATTTTTGAATTTCACCTAAATTTTCCTGAAATTTCAGAAATTCCCGAATTTCCGAAATATTGAACTTTTGTGATAAAGAAAGTTTTTTTTTCAGATCTTCGAAACCCCAGTGACTCTGCCACCAGTAAGTTGGATAGATCCGATTGTCTACTAGAGAATTTGAGAAAAAATTTGAATAAAAATTTTTGAGAAGGGCAAAACGAAAATTACATTTTTTTAGAATTTGAAATTTTCAGATTTTGAATGACACCTCAGGAAAATCGTCATCGTCTTCTTCTTCTTCCTCATCATCCTCTTCTGAGGAACACAAGGTAGGACATCTGGGAATACAGACACACAGATTTTTTCTAGAATTTTCGAAGTTCCGAAAAATCCAAGTTCTCTGGACTGCTAAAAATTTCGGAACTTCCAATGTATCCTGAATTTCTGAATTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>502 447 51</canonical_bands>
                <polymorphic_bands>553 447</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACCAATCTACGAGCAAACT</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCAAAAATCCTGAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACCAATCTACGAGCAAACTCCAGTCGATTTGCCACCAGTGAGTTTTTTTCCGACTTTTTTGAATTTGGAATCTTTTGAAAATTTTGCAAAAAAATTTCTGGAATCTCGAAAATTTTCGACGTTCTCAATTTCCTGGATTTGGAATTCCAAAACATTCGTAGTTCTTGCAACGTTTTGAATTCTGAAATTTCGGCATTTTGAAAACTTTTGGAAGCTGTTATTTTTGAAGTTTCAGGATTTTTGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>CACCAATCTACGAGCAAACTCCAGTCGATTTGCCACCAGTGAGTTTTTTTCCGACTTTTTTGAATTTGGAATCTTTTGAAAATTTTGCAAAAAAATTTCTGGAATCTCGAAAATTTTCGACGTTCTCAATTTCCTGGATTTGGAATTCCAAAACATTCGTAGTTCTTGCAACKTTTTGAATTCTGAAATTTCGGCATTTTGAAAACTTTTGGAAGCTGTTATTTTTGAAGTTTCAGGATTTTTGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25459</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>256028</contig_pos>
        <strand>+</strand>
        <context>GGAGCATCTT[C/T]TGAAGATCAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGCTCGTCGCCGAACTCATCGTGGTCCGTGTGAATTCTGGAGCATCTT</left_flank>
        <right_flank>TGAAGATCACTATCGTTCCGAGATGGTGAATTGTATGGCGATGGGAAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCACCAGATGGAGAAATAGAAGAGGATCGAGAATTCGATCCGACGATTTTTGACGATGAGGATGTTGAGAGGAGGGTTGTGATAAGAGAACACGCGTGGATTGATCCAATGTTCTGGGGAATGTTTAAGGTATGCGAAATGGACATCGGTGGCCGAGAAAACCGATTTTCTAGGCCACTGGTTTATGCCTAATGAAAAACTGAAAGCACCACTCGATTTTCCATGCTCTCTTGCCCCAACCCTGAAATTTTCAGCCTCCTAGCAAAGTGTCGTAAGCTAAGGTGCATTGTGTGCAAACACCAAGCTACAGTAACACCACGTCTTACGACACTTTGAGCTAGGAGGCTACAAAATTCAGTGTTGGGGGAAAAGGGCATGAGAATTTCAATAGTGGTATTGGTTCTTGAAAATTTCAGTGTTGGAATCTAAAAGTCTGAAAATGCCGTTTTCAGCTCGTCGCCGAACTCATCGTGGTCCGTGTGAATTCTGGAGCATCTTCTGAAGATCACTATCGTTCCGAGATGGTGAATTGTATGGCGATGGGAAATGTACCGTATTCCCGACTGCGGGCGTCGATTTCTGAGAAAGGATCAAGAGGAAGCGAGAATATCGATAAGCATTTTGAGAGGATTCTGATGGAGGTATGATTTTTAAATGGTGGCCTAGAAAACCACATTTTTGAAAAAATTCGACCATGAACGAGTTTTTTAAAAAAACTCTGAAAGTGTTGAATTACTATTTTAGATCGGTGACTTTGTTGAGCCAATGGAATGCGCGAATCACCTCCAACAAGGATCCTACCAACTGAAGACGTCAATATGGGATTCAGAAGTGTGTCCAGTGTTCTTCATGATGCGTTCCACGTCTATTAAACAGGCACGAGAGGTCTTCTCAAAAATGCAAGCGAGAGAAAAGAAGAATTCCGTCGACAGTGGCGTTCAAATGCATCCAGATGAACGATTCTGGGTACCATTTCGGCTGATTGATTTTGATGAAAAA</canonical>
            <polymorphic>GGCACCAGATGGAGAAATAGAAGAGGATCGAGAATTCGATCCGACGATTTTTGACGATGAGGATGTTGAGAGGAGGGTTGTGATAAGAGAACACGCGTGGATTGATCCAATGTTCTGGGGAATGTTTAAGGTATGCGAAATGGACATCGGTGGCCGAGAAAACCGATTTTCTAGGCCACTGGTTTATGCCTAATGAAAAACTGAAAGCACCACTCGATTTTCCATGCTCTCTTGCCCCAACCCTGAAATTTTCAGCCTCCTAGCAAAGTGTCGTAAGCTAAGGTGCATTGTGTGCAAACACCAAGCTACAGTAACACCACGTCTTACGACACTTTGAGCTAGGAGGCTACAAAATTCAGTGTTGGGGGAAAAGGGCATGAGAATTTCAATAGTGGTATTGGTTCTTGAAAATTTCAGTGTTGGAATCTAAAAGTCTGAAAATGCCGTTTTCAGCTCGTCGCCGAACTCATCGTGGTCCGTGTGAATTCTGGAGCATCTTYTGAAGATCACTATCGTTCCGAGATGGTGAATTGTATGGCGATGGGAAATGTACCGTATTCCCGACTGCGGGCGTCGATTTCTGAGAAAGGATCAAGAGGAAGCGAGAATATCGATAAGCATTTTGAGAGGATTCTGATGGAGGTATGATTTTTAAATGGTGGCCTAGAAAACCACATTTTTGAAAAAATTCGACCATGAACGAGTTTTTTAAAAAAACTCTGAAAGTGTTGAATTACTATTTTAGATCGGTGACTTTGTTGAGCCAATGGAATGCGCGAATCACCTCCAACAAGGATCCTACCAACTGAAGACGTCAATATGGGATTCAGAAGTGTGTCCAGTGTTCTTCATGATGCGTTCCACGTCTATTAAACAGGCACGAGAGGTCTTCTCAAAAATGCAAGCGAGAGAAAAGAAGAATTCCGTCGACAGTGGCGTTCAAATGCATCCAGATGAACGATTCTGGGTACCATTTCGGCTGATTGATTTTGATGAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>394 171 108 86 65 63 53 42 18</canonical_bands>
                <polymorphic_bands>394 171 108 86 83 63 53 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTTCAGTGTTGGAATCTAAA</pcr_primer_p1>
		<pcr_primer_p2>TCAAAATGCTTATCGATATTCTC</pcr_primer_p2>
		<pcr_amplicon_size>218</pcr_amplicon_size>
		<canonical_amplicon>AAATTTCAGTGTTGGAATCTAAAAGTCTGAAAATGCCGTTTTCAGCTCGTCGCCGAACTCATCGTGGTCCGTGTGAATTCTGGAGCATCTTCTGAAGATCACTATCGTTCCGAGATGGTGAATTGTATGGCGATGGGAAATGTACCGTATTCCCGACTGCGGGCGTCGATTTCTGAGAAAGGATCAAGAGGAAGCGAGAATATCGATAAGCATTTTGA</canonical_amplicon>
		<polymorphic_amplicon>AAATTTCAGTGTTGGAATCTAAAAGTCTGAAAATGCCGTTTTCAGCTCGTCGCCGAACTCATCGTGGTCCGTGTGAATTCTGGAGCATCTTYTGAAGATCACTATCGTTCCGAGATGGTGAATTGTATGGCGATGGGAAATGTACCGTATTCCCGACTGCGGGCGTCGATTTCTGAGAAAGGATCAAGAGGAAGCGAGAATATCGATAAGCATTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25460</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>256220</contig_pos>
        <strand></strand>
        <context>gaaaaaattc[G/C]accatgaacg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GGTATGATTTTTAAATGGTGGCCTAGAAAACCACATTTTTGAAAAAATTC</left_flank>
        <right_flank>ACCATGAACGAGTTTTTTAAAAAAACTCTGAAAGTGTTGAATTACTATTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAAAAACTGAAAGCACCACTCGATTTTCCATGCTCTCTTGCCCCAACCCTGAAATTTTCAGCCTCCTAGCAAAGTGTCGTAAGCTAAGGTGCATTGTGTGCAAACACCAAGCTACAGTAACACCACGTCTTACGACACTTTGAGCTAGGAGGCTACAAAATTCAGTGTTGGGGGAAAAGGGCATGAGAATTTCAATAGTGGTATTGGTTCTTGAAAATTTCAGTGTTGGAATCTAAAAGTCTGAAAATGCCGTTTTCAGCTCGTCGCCGAACTCATCGTGGTCCGTGTGAATTCTGGAGCATCTTCTGAAGATCACTATCGTTCCGAGATGGTGAATTGTATGGCGATGGGAAATGTACCGTATTCCCGACTGCGGGCGTCGATTTCTGAGAAAGGATCAAGAGGAAGCGAGAATATCGATAAGCATTTTGAGAGGATTCTGATGGAGGTATGATTTTTAAATGGTGGCCTAGAAAACCACATTTTTGAAAAAATTCGACCATGAACGAGTTTTTTAAAAAAACTCTGAAAGTGTTGAATTACTATTTTAGATCGGTGACTTTGTTGAGCCAATGGAATGCGCGAATCACCTCCAACAAGGATCCTACCAACTGAAGACGTCAATATGGGATTCAGAAGTGTGTCCAGTGTTCTTCATGATGCGTTCCACGTCTATTAAACAGGCACGAGAGGTCTTCTCAAAAATGCAAGCGAGAGAAAAGAAGAATTCCGTCGACAGTGGCGTTCAAATGCATCCAGATGAACGATTCTGGGTACCATTTCGGCTGATTGATTTTGATGAAAAAAAGAGGAATCCGGGAATTTCGAAAATCTATAATTTCCTCCTTTCCGAGAGATTCTTGTTGCACTGTGTGGCGGTTTTGGCGTCGGAACATGATCAGGAAGTTAAATTACATGATTGTACGATTCAATTGGCGGTCTTTTTGATGACATTGGCTGTGAAATATGTACAAGGATTTAAGGGAGAGAACGAGGTC</canonical>
            <polymorphic>ATGAAAAACTGAAAGCACCACTCGATTTTCCATGCTCTCTTGCCCCAACCCTGAAATTTTCAGCCTCCTAGCAAAGTGTCGTAAGCTAAGGTGCATTGTGTGCAAACACCAAGCTACAGTAACACCACGTCTTACGACACTTTGAGCTAGGAGGCTACAAAATTCAGTGTTGGGGGAAAAGGGCATGAGAATTTCAATAGTGGTATTGGTTCTTGAAAATTTCAGTGTTGGAATCTAAAAGTCTGAAAATGCCGTTTTCAGCTCGTCGCCGAACTCATCGTGGTCCGTGTGAATTCTGGAGCATCTTCTGAAGATCACTATCGTTCCGAGATGGTGAATTGTATGGCGATGGGAAATGTACCGTATTCCCGACTGCGGGCGTCGATTTCTGAGAAAGGATCAAGAGGAAGCGAGAATATCGATAAGCATTTTGAGAGGATTCTGATGGAGGTATGATTTTTAAATGGTGGCCTAGAAAACCACATTTTTGAAAAAATTCSACCATGAACGAGTTTTTTAAAAAAACTCTGAAAGTGTTGAATTACTATTTTAGATCGGTGACTTTGTTGAGCCAATGGAATGCGCGAATCACCTCCAACAAGGATCCTACCAACTGAAGACGTCAATATGGGATTCAGAAGTGTGTCCAGTGTTCTTCATGATGCGTTCCACGTCTATTAAACAGGCACGAGAGGTCTTCTCAAAAATGCAAGCGAGAGAAAAGAAGAATTCCGTCGACAGTGGCGTTCAAATGCATCCAGATGAACGATTCTGGGTACCATTTCGGCTGATTGATTTTGATGAAAAAAAGAGGAATCCGGGAATTTCGAAAATCTATAATTTCCTCCTTTCCGAGAGATTCTTGTTGCACTGTGTGGCGGTTTTGGCGTCGGAACATGATCAGGAAGTTAAATTACATGATTGTACGATTCAATTGGCGGTCTTTTTGATGACATTGGCTGTGAAATATGTACAAGGATTTAAGGGAGAGAACGAGGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>360 237 172 92 79 37 23</canonical_bands>
                <polymorphic_bands>360 316 172 92 37 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAATATCGATAAGCATTTTGAG</pcr_primer_p1>
		<pcr_primer_p2>ATGAAGAACACTGGACACACTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGAATATCGATAAGCATTTTGAGAGGATTCTGATGGAGGTATGATTTTTAAATGGTGGCCTAGAAAACCACATTTTTGAAAAAATTCGACCATGAACGAGTTTTTTAAAAAAACTCTGAAAGTGTTGAATTACTATTTTAGATCGGTGACTTTGTTGAGCCAATGGAATGCGCGAATCACCTCCAACAAGGATCCTACCAACTGAAGACGTCAATATGGGATTCAGAAGTGTGTCCAGTGTTCTTCAT</canonical_amplicon>
		<polymorphic_amplicon>AGAATATCGATAAGCATTTTGAGAGGATTCTGATGGAGGTATGATTTTTAAATGGTGGCCTAGAAAACCACATTTTTGAAAAAATTCSACCATGAACGAGTTTTTTAAAAAAACTCTGAAAGTGTTGAATTACTATTTTAGATCGGTGACTTTGTTGAGCCAATGGAATGCGCGAATCACCTCCAACAAGGATCCTACCAACTGAAGACGTCAATATGGGATTCAGAAGTGTGTCCAGTGTTCTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25461</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>263689</contig_pos>
        <strand>+</strand>
        <context>TTTCTAGCAG[C/T]AAAAAATATG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAG</left_flank>
        <right_flank>AAAAAATATGATTTCATGTCGAAAAAAAGATTTTTCCATTTGTTTTTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAAAATTAATCAAGATTCTGATCCTGTGACGAATTCTCTTTAACTGAGCCAACGATCAGCAGACAGATAACAAGGAAAATGATGATACAGTAGAATATCTGAAAATTGGAAAAACTGAAACTTTTGAATTTGAAAGAAAAATCGAAATTCCAAAAAAATCTTTCGAAATTTGGAAATTTTAAAAATCTCAAATTCTGGATATTGACAATTTTGAGAGTCCGAAATTCCTTTAAAAAACTCACCAAAAACGCGGTACATGCGAAAAACGCGGACCAATAGATCATTGGATCACAATAATGCCTCTCGAACATTCCCTCGTTGAAATGGACGAACGCTTTTGAGCCGTACACCCAGACGCATCCTGAAAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTCATGTCGAAAAAAAGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTTGCCAATAACATTTTCCGACCAACTAGAATTCGTATGGTAGAACTCAACGAGCCCTAATAGATGGTACTATTTGGATTAATGTACCTTGTCTATGAGCAAAGTTACGAGCCATAAAGCAACTTGGCCTATAACTTTGCTCATAGAAAAGCTACAGTATCCCAAATGGTACCATCTTGTATAACTCGTCAAGTTCTATTATAGCACTTTTATTTTATTGAAAAATATGGATTCTGAAGGAATTTGGATTTTTTATTTCTAAAATTCTTGATTCCGAGATTCTGGATTCCAAAGAATACGAGTTCTTCTGGTTTTTTTCGAAAAAATTTTGAACTTCGCAAAATTTTCGATAAAGAAAACTCACCCAAAATAAGCCATACAACATTGGCCAACGCGAACAGGACCTCCAATCCCTTACAC</canonical>
            <polymorphic>CAGAAAATTAATCAAGATTCTGATCCTGTGACGAATTCTCTTTAACTGAGCCAACGATCAGCAGACAGATAACAAGGAAAATGATGATACAGTAGAATATCTGAAAATTGGAAAAACTGAAACTTTTGAATTTGAAAGAAAAATCGAAATTCCAAAAAAATCTTTCGAAATTTGGAAATTTTAAAAATCTCAAATTCTGGATATTGACAATTTTGAGAGTCCGAAATTCCTTTAAAAAACTCACCAAAAACGCGGTACATGCGAAAAACGCGGACCAATAGATCATTGGATCACAATAATGCCTCTCGAACATTCCCTCGTTGAAATGGACGAACGCTTTTGAGCCGTACACCCAGACGCATCCTGAAAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGYAAAAAATATGATTTCATGTCGAAAAAAAGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTTGCCAATAACATTTTCCGACCAACTAGAATTCGTATGGTAGAACTCAACGAGCCCTAATAGATGGTACTATTTGGATTAATGTACCTTGTCTATGAGCAAAGTTACGAGCCATAAAGCAACTTGGCCTATAACTTTGCTCATAGAAAAGCTACAGTATCCCAAATGGTACCATCTTGTATAACTCGTCAAGTTCTATTATAGCACTTTTATTTTATTGAAAAATATGGATTCTGAAGGAATTTGGATTTTTTATTTCTAAAATTCTTGATTCCGAGATTCTGGATTCCAAAGAATACGAGTTCTTCTGGTTTTTTTCGAAAAAATTTTGAACTTCGCAAAATTTTCGATAAAGAAAACTCACCCAAAATAAGCCATACAACATTGGCCAACGCGAACAGGACCTCCAATCCCTTACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTGCATTTTTGGGAGAT</pcr_primer_p1>
		<pcr_primer_p2>AAGTGTGGAAAATAGGTTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>216</pcr_amplicon_size>
		<canonical_amplicon>AAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTCATGTCGAAAAAAAGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTT</canonical_amplicon>
		<polymorphic_amplicon>AAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGYAAAAAATATGATTTCATGTCGAAAAAAAGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25462</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>263802</contig_pos>
        <strand></strand>
        <context>caactagaat[T/C]cgtatggtag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCAACCTATTTTCCACACTTGCCAATAACATTTTCCGACCAACTAGAAT</left_flank>
        <right_flank>CGTATGGTAGAACTCAACGAGCCCTAATAGATGGTACTATTTGGATTAAT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTGAAACTTTTGAATTTGAAAGAAAAATCGAAATTCCAAAAAAATCTTTCGAAATTTGGAAATTTTAAAAATCTCAAATTCTGGATATTGACAATTTTGAGAGTCCGAAATTCCTTTAAAAAACTCACCAAAAACGCGGTACATGCGAAAAACGCGGACCAATAGATCATTGGATCACAATAATGCCTCTCGAACATTCCCTCGTTGAAATGGACGAACGCTTTTGAGCCGTACACCCAGACGCATCCTGAAAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTCATGTCGAAAAAAAGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTTGCCAATAACATTTTCCGACCAACTAGAATTCGTATGGTAGAACTCAACGAGCCCTAATAGATGGTACTATTTGGATTAATGTACCTTGTCTATGAGCAAAGTTACGAGCCATAAAGCAACTTGGCCTATAACTTTGCTCATAGAAAAGCTACAGTATCCCAAATGGTACCATCTTGTATAACTCGTCAAGTTCTATTATAGCACTTTTATTTTATTGAAAAATATGGATTCTGAAGGAATTTGGATTTTTTATTTCTAAAATTCTTGATTCCGAGATTCTGGATTCCAAAGAATACGAGTTCTTCTGGTTTTTTTCGAAAAAATTTTGAACTTCGCAAAATTTTCGATAAAGAAAACTCACCCAAAATAAGCCATACAACATTGGCCAACGCGAACAGGACCTCCAATCCCTTACACAACAAACTGGCACCCAACTGTCTCTGTTGTCTACGATAGGCGGTTCTTCGCGGTGTTGGAATCAGGAAATAGATGCGAAACGTTGCGGAAATGATGAAAAGAACTCCTTCGAC</canonical>
            <polymorphic>AAACTGAAACTTTTGAATTTGAAAGAAAAATCGAAATTCCAAAAAAATCTTTCGAAATTTGGAAATTTTAAAAATCTCAAATTCTGGATATTGACAATTTTGAGAGTCCGAAATTCCTTTAAAAAACTCACCAAAAACGCGGTACATGCGAAAAACGCGGACCAATAGATCATTGGATCACAATAATGCCTCTCGAACATTCCCTCGTTGAAATGGACGAACGCTTTTGAGCCGTACACCCAGACGCATCCTGAAAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTCATGTCGAAAAAAAGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTTGCCAATAACATTTTCCGACCAACTAGAATYCGTATGGTAGAACTCAACGAGCCCTAATAGATGGTACTATTTGGATTAATGTACCTTGTCTATGAGCAAAGTTACGAGCCATAAAGCAACTTGGCCTATAACTTTGCTCATAGAAAAGCTACAGTATCCCAAATGGTACCATCTTGTATAACTCGTCAAGTTCTATTATAGCACTTTTATTTTATTGAAAAATATGGATTCTGAAGGAATTTGGATTTTTTATTTCTAAAATTCTTGATTCCGAGATTCTGGATTCCAAAGAATACGAGTTCTTCTGGTTTTTTTCGAAAAAATTTTGAACTTCGCAAAATTTTCGATAAAGAAAACTCACCCAAAATAAGCCATACAACATTGGCCAACGCGAACAGGACCTCCAATCCCTTACACAACAAACTGGCACCCAACTGTCTCTGTTGTCTACGATAGGCGGTTCTTCGCGGTGTTGGAATCAGGAAATAGATGCGAAACGTTGCGGAAATGATGAAAAGAACTCCTTCGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>211 192 172 122 62 52 32 28 22 21 19 17 16 15 11 8</canonical_bands>
                <polymorphic_bands>333 192 172 62 52 32 28 22 21 19 17 16 15 11 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>211 192 144 122 62 28 28 23 22 21 19 19 17 16 16 16 15 11 10 8</canonical_bands>
                <polymorphic_bands>333 192 144 62 28 28 23 22 21 19 19 17 16 16 16 15 11 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAACCTATTTTCCACACT</pcr_primer_p1>
		<pcr_primer_p2>CGGAATCAAGAATTTTAGAAATAA</pcr_primer_p2>
		<pcr_amplicon_size>296</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAACCTATTTTCCACACTTGCCAATAACATTTTCCGACCAACTAGAATTCGTATGGTAGAACTCAACGAGCCCTAATAGATGGTACTATTTGGATTAATGTACCTTGTCTATGAGCAAAGTTACGAGCCATAAAGCAACTTGGCCTATAACTTTGCTCATAGAAAAGCTACAGTATCCCAAATGGTACCATCTTGTATAACTCGTCAAGTTCTATTATAGCACTTTTATTTTATTGAAAAATATGGATTCTGAAGGAATTTGGATTTTTTATTTCTAAAATTCTTGATTCCG</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAACCTATTTTCCACACTTGCCAATAACATTTTCCGACCAACTAGAATYCGTATGGTAGAACTCAACGAGCCCTAATAGATGGTACTATTTGGATTAATGTACCTTGTCTATGAGCAAAGTTACGAGCCATAAAGCAACTTGGCCTATAACTTTGCTCATAGAAAAGCTACAGTATCCCAAATGGTACCATCTTGTATAACTCGTCAAGTTCTATTATAGCACTTTTATTTTATTGAAAAATATGGATTCTGAAGGAATTTGGATTTTTTATTTCTAAAATTCTTGATTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25463</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>263827</contig_pos>
        <strand></strand>
        <context>caacgagccc[T/C]aatagatggt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATAACATTTTCCGACCAACTAGAATTCGTATGGTAGAACTCAACGAGCCC</left_flank>
        <right_flank>AATAGATGGTACTATTTGGATTAATGTACCTTGTCTATGAGCAAAGTTAC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATCGAAATTCCAAAAAAATCTTTCGAAATTTGGAAATTTTAAAAATCTCAAATTCTGGATATTGACAATTTTGAGAGTCCGAAATTCCTTTAAAAAACTCACCAAAAACGCGGTACATGCGAAAAACGCGGACCAATAGATCATTGGATCACAATAATGCCTCTCGAACATTCCCTCGTTGAAATGGACGAACGCTTTTGAGCCGTACACCCAGACGCATCCTGAAAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTCATGTCGAAAAAAAGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTTGCCAATAACATTTTCCGACCAACTAGAATTCGTATGGTAGAACTCAACGAGCCCTAATAGATGGTACTATTTGGATTAATGTACCTTGTCTATGAGCAAAGTTACGAGCCATAAAGCAACTTGGCCTATAACTTTGCTCATAGAAAAGCTACAGTATCCCAAATGGTACCATCTTGTATAACTCGTCAAGTTCTATTATAGCACTTTTATTTTATTGAAAAATATGGATTCTGAAGGAATTTGGATTTTTTATTTCTAAAATTCTTGATTCCGAGATTCTGGATTCCAAAGAATACGAGTTCTTCTGGTTTTTTTCGAAAAAATTTTGAACTTCGCAAAATTTTCGATAAAGAAAACTCACCCAAAATAAGCCATACAACATTGGCCAACGCGAACAGGACCTCCAATCCCTTACACAACAAACTGGCACCCAACTGTCTCTGTTGTCTACGATAGGCGGTTCTTCGCGGTGTTGGAATCAGGAAATAGATGCGAAACGTTGCGGAAATGATGAAAAGAACTCCTTCGACAATCAACCAGATTGGTATCATTGGT</canonical>
            <polymorphic>AAAAATCGAAATTCCAAAAAAATCTTTCGAAATTTGGAAATTTTAAAAATCTCAAATTCTGGATATTGACAATTTTGAGAGTCCGAAATTCCTTTAAAAAACTCACCAAAAACGCGGTACATGCGAAAAACGCGGACCAATAGATCATTGGATCACAATAATGCCTCTCGAACATTCCCTCGTTGAAATGGACGAACGCTTTTGAGCCGTACACCCAGACGCATCCTGAAAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTCATGTCGAAAAAAAGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTTGCCAATAACATTTTCCGACCAACTAGAATTCGTATGGTAGAACTCAACGAGCCCYAATAGATGGTACTATTTGGATTAATGTACCTTGTCTATGAGCAAAGTTACGAGCCATAAAGCAACTTGGCCTATAACTTTGCTCATAGAAAAGCTACAGTATCCCAAATGGTACCATCTTGTATAACTCGTCAAGTTCTATTATAGCACTTTTATTTTATTGAAAAATATGGATTCTGAAGGAATTTGGATTTTTTATTTCTAAAATTCTTGATTCCGAGATTCTGGATTCCAAAGAATACGAGTTCTTCTGGTTTTTTTCGAAAAAATTTTGAACTTCGCAAAATTTTCGATAAAGAAAACTCACCCAAAATAAGCCATACAACATTGGCCAACGCGAACAGGACCTCCAATCCCTTACACAACAAACTGGCACCCAACTGTCTCTGTTGTCTACGATAGGCGGTTCTTCGCGGTGTTGGAATCAGGAAATAGATGCGAAACGTTGCGGAAATGATGAAAAGAACTCCTTCGACAATCAACCAGATTGGTATCATTGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAACCTATTTTCCACACTTG</pcr_primer_p1>
		<pcr_primer_p2>CGGAATCAAGAATTTTAGAAATAA</pcr_primer_p2>
		<pcr_amplicon_size>293</pcr_amplicon_size>
		<canonical_amplicon>TCAACCTATTTTCCACACTTGCCAATAACATTTTCCGACCAACTAGAATTCGTATGGTAGAACTCAACGAGCCCTAATAGATGGTACTATTTGGATTAATGTACCTTGTCTATGAGCAAAGTTACGAGCCATAAAGCAACTTGGCCTATAACTTTGCTCATAGAAAAGCTACAGTATCCCAAATGGTACCATCTTGTATAACTCGTCAAGTTCTATTATAGCACTTTTATTTTATTGAAAAATATGGATTCTGAAGGAATTTGGATTTTTTATTTCTAAAATTCTTGATTCCG</canonical_amplicon>
		<polymorphic_amplicon>TCAACCTATTTTCCACACTTGCCAATAACATTTTCCGACCAACTAGAATTCGTATGGTAGAACTCAACGAGCCCYAATAGATGGTACTATTTGGATTAATGTACCTTGTCTATGAGCAAAGTTACGAGCCATAAAGCAACTTGGCCTATAACTTTGCTCATAGAAAAGCTACAGTATCCCAAATGGTACCATCTTGTATAACTCGTCAAGTTCTATTATAGCACTTTTATTTTATTGAAAAATATGGATTCTGAAGGAATTTGGATTTTTTATTTCTAAAATTCTTGATTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25464</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>263856</contig_pos>
        <strand></strand>
        <context>gattaatgta[C/T]cttgtctatg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGGTAGAACTCAACGAGCCCTAATAGATGGTACTATTTGGATTAATGTA</left_flank>
        <right_flank>CTTGTCTATGAGCAAAGTTACGAGCCATAAAGCAACTTGGCCTATAACTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTGGAAATTTTAAAAATCTCAAATTCTGGATATTGACAATTTTGAGAGTCCGAAATTCCTTTAAAAAACTCACCAAAAACGCGGTACATGCGAAAAACGCGGACCAATAGATCATTGGATCACAATAATGCCTCTCGAACATTCCCTCGTTGAAATGGACGAACGCTTTTGAGCCGTACACCCAGACGCATCCTGAAAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTCATGTCGAAAAAAAGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTTGCCAATAACATTTTCCGACCAACTAGAATTCGTATGGTAGAACTCAACGAGCCCTAATAGATGGTACTATTTGGATTAATGTACCTTGTCTATGAGCAAAGTTACGAGCCATAAAGCAACTTGGCCTATAACTTTGCTCATAGAAAAGCTACAGTATCCCAAATGGTACCATCTTGTATAACTCGTCAAGTTCTATTATAGCACTTTTATTTTATTGAAAAATATGGATTCTGAAGGAATTTGGATTTTTTATTTCTAAAATTCTTGATTCCGAGATTCTGGATTCCAAAGAATACGAGTTCTTCTGGTTTTTTTCGAAAAAATTTTGAACTTCGCAAAATTTTCGATAAAGAAAACTCACCCAAAATAAGCCATACAACATTGGCCAACGCGAACAGGACCTCCAATCCCTTACACAACAAACTGGCACCCAACTGTCTCTGTTGTCTACGATAGGCGGTTCTTCGCGGTGTTGGAATCAGGAAATAGATGCGAAACGTTGCGGAAATGATGAAAAGAACTCCTTCGACAATCAACCAGATTGGTATCATTGGTTGAACGGCACAGAATGGAGCATTCAGAAG</canonical>
            <polymorphic>AAATTTGGAAATTTTAAAAATCTCAAATTCTGGATATTGACAATTTTGAGAGTCCGAAATTCCTTTAAAAAACTCACCAAAAACGCGGTACATGCGAAAAACGCGGACCAATAGATCATTGGATCACAATAATGCCTCTCGAACATTCCCTCGTTGAAATGGACGAACGCTTTTGAGCCGTACACCCAGACGCATCCTGAAAATTGCATTTTTGGGAGATTTTAGGGGAAATTTGACGAAAAACGACCAAAATATGAAATTTGTGTGAAATTTGGGCCGTTTTTAGCTAGAAATTAGCCTGAATTAGGCAAAAAATCTGAAATTTCTAGCAGAAAAAAATATGATTTCATGTCGAAAAAAAGATTTTTCCATTTGTTTTTTTACTTACTTTTTTTTTCAACCTATTTTCCACACTTGCCAATAACATTTTCCGACCAACTAGAATTCGTATGGTAGAACTCAACGAGCCCTAATAGATGGTACTATTTGGATTAATGTAYCTTGTCTATGAGCAAAGTTACGAGCCATAAAGCAACTTGGCCTATAACTTTGCTCATAGAAAAGCTACAGTATCCCAAATGGTACCATCTTGTATAACTCGTCAAGTTCTATTATAGCACTTTTATTTTATTGAAAAATATGGATTCTGAAGGAATTTGGATTTTTTATTTCTAAAATTCTTGATTCCGAGATTCTGGATTCCAAAGAATACGAGTTCTTCTGGTTTTTTTCGAAAAAATTTTGAACTTCGCAAAATTTTCGATAAAGAAAACTCACCCAAAATAAGCCATACAACATTGGCCAACGCGAACAGGACCTCCAATCCCTTACACAACAAACTGGCACCCAACTGTCTCTGTTGTCTACGATAGGCGGTTCTTCGCGGTGTTGGAATCAGGAAATAGATGCGAAACGTTGCGGAAATGATGAAAAGAACTCCTTCGACAATCAACCAGATTGGTATCATTGGTTGAACGGCACAGAATGGAGCATTCAGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>417 300 92 89 85 17</canonical_bands>
                <polymorphic_bands>417 300 102 92 89</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAACCTATTTTCCACACTTG</pcr_primer_p1>
		<pcr_primer_p2>CGGAATCAAGAATTTTAGAAATAA</pcr_primer_p2>
		<pcr_amplicon_size>293</pcr_amplicon_size>
		<canonical_amplicon>TCAACCTATTTTCCACACTTGCCAATAACATTTTCCGACCAACTAGAATTCGTATGGTAGAACTCAACGAGCCCTAATAGATGGTACTATTTGGATTAATGTACCTTGTCTATGAGCAAAGTTACGAGCCATAAAGCAACTTGGCCTATAACTTTGCTCATAGAAAAGCTACAGTATCCCAAATGGTACCATCTTGTATAACTCGTCAAGTTCTATTATAGCACTTTTATTTTATTGAAAAATATGGATTCTGAAGGAATTTGGATTTTTTATTTCTAAAATTCTTGATTCCG</canonical_amplicon>
		<polymorphic_amplicon>TCAACCTATTTTCCACACTTGCCAATAACATTTTCCGACCAACTAGAATTCGTATGGTAGAACTCAACGAGCCCTAATAGATGGTACTATTTGGATTAATGTAYCTTGTCTATGAGCAAAGTTACGAGCCATAAAGCAACTTGGCCTATAACTTTGCTCATAGAAAAGCTACAGTATCCCAAATGGTACCATCTTGTATAACTCGTCAAGTTCTATTATAGCACTTTTATTTTATTGAAAAATATGGATTCTGAAGGAATTTGGATTTTTTATTTCTAAAATTCTTGATTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25465</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>287604</contig_pos>
        <strand>+</strand>
        <context>CAGCGATCTC[C/G]TGGATTCTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGAAGGTATGGGAGGAACTGCTTGGACTTGGCGACGTCTCCAGCGATCTC</left_flank>
        <right_flank>TGGATTCTGAGAGTGTCCTTCTTCTCGGCAGTCTTGTCAGCGAACAATCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAGCCAACAAGGCGTTGTAGTGTCCACTGCGCTCAGCGGTGAAGTGAAGAGTGGCAAGTCCAGCTTCAACAAGGGCCTCGCTCAAGTTGATTCCTCGGGAGGTGTTTCCGTCTGGAGACACGAAGAGATATCCGACAAAGTTTCCGTTTTTGTCAGTAGACTCGACTTCGAGTTGAACCTCGTGCTGGAGCACAAGTTTGCGGGTGAAGGCAGCGGCCTCATCAGCGAATGGCTCAGCAGCTCCAATAGTAACTCCTCCTGGTCCAACACGGGATCCCTTTGGGCAGTTGATTCCTCCGAGCAAGAAGGTGATGAGAACAGTTTCCTTTGGAATGTAGATACGGAGACGGGATCCTCCGGACAAGAATTCGACGACTCCTTCGGCTCTGAAACACCGTTTATCAGAACTATTCACATAATCAAGAATACAACTTACCTTCCTCCTCTCTGAAGGTATGGGAGGAACTGCTTGGACTTGGCGACGTCTCCAGCGATCTCCTGGATTCTGAGAGTGTCCTTCTTCTCGGCAGTCTTGTCAGCGAACAATCCCTTCTTTCCCTTCTCGGCATTAGCTTCGGCGGCCAGAAGAAGATCATACTCGCAGGATCGGTTCTCATCATCGGCACGGTGACGGACAACCTTGCTCAATCCACGGCTGATAAGTCCTTCGGCAATGTTGAGGTCTCCGTGCTTAATAGTAGCGCAGGTCTTTTCTGGGAAGTTGTCTGTCTTTGGTTGAACGTAGTCGATTTGCACTTGAACCTTCTTTCCATGAATTCTCTTACGAAGGAATTCGCGAGCTTGAAACATGAATGGAACATCGTAGAGTGGACGGAATTGACGGCCAACTGATGGCTGTTTGTCTTCTGCAGTCTCTTTTGGAAGTCTGACTGAGGAGAGGTGAAGCTTCATTTCAGTTCCATCCTCCTTTTGTACCACAACTGCGTCATTGAGAACGACCTCGACCACCTTGGCGCTGAAAGCCTTGCGATCTCCGGA</canonical>
            <polymorphic>GCAGCCAACAAGGCGTTGTAGTGTCCACTGCGCTCAGCGGTGAAGTGAAGAGTGGCAAGTCCAGCTTCAACAAGGGCCTCGCTCAAGTTGATTCCTCGGGAGGTGTTTCCGTCTGGAGACACGAAGAGATATCCGACAAAGTTTCCGTTTTTGTCAGTAGACTCGACTTCGAGTTGAACCTCGTGCTGGAGCACAAGTTTGCGGGTGAAGGCAGCGGCCTCATCAGCGAATGGCTCAGCAGCTCCAATAGTAACTCCTCCTGGTCCAACACGGGATCCCTTTGGGCAGTTGATTCCTCCGAGCAAGAAGGTGATGAGAACAGTTTCCTTTGGAATGTAGATACGGAGACGGGATCCTCCGGACAAGAATTCGACGACTCCTTCGGCTCTGAAACACCGTTTATCAGAACTATTCACATAATCAAGAATACAACTTACCTTCCTCCTCTCTGAAGGTATGGGAGGAACTGCTTGGACTTGGCGACGTCTCCAGCGATCTCSTGGATTCTGAGAGTGTCCTTCTTCTCGGCAGTCTTGTCAGCGAACAATCCCTTCTTTCCCTTCTCGGCATTAGCTTCGGCGGCCAGAAGAAGATCATACTCGCAGGATCGGTTCTCATCATCGGCACGGTGACGGACAACCTTGCTCAATCCACGGCTGATAAGTCCTTCGGCAATGTTGAGGTCTCCGTGCTTAATAGTAGCGCAGGTCTTTTCTGGGAAGTTGTCTGTCTTTGGTTGAACGTAGTCGATTTGCACTTGAACCTTCTTTCCATGAATTCTCTTACGAAGGAATTCGCGAGCTTGAAACATGAATGGAACATCGTAGAGTGGACGGAATTGACGGCCAACTGATGGCTGTTTGTCTTCTGCAGTCTCTTTTGGAAGTCTGACTGAGGAGAGGTGAAGCTTCATTTCAGTTCCATCCTCCTTTTGTACCACAACTGCGTCATTGAGAACGACCTCGACCACCTTGGCGCTGAAAGCCTTGCGATCTCCGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>500 260 240</canonical_bands>
                <polymorphic_bands>740 260</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>500 260 240</canonical_bands>
                <polymorphic_bands>740 260</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACAACTTACCTTCCTCCTCTCT</pcr_primer_p1>
		<pcr_primer_p2>AACATTGCCGAAGGACTTAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TACAACTTACCTTCCTCCTCTCTGAAGGTATGGGAGGAACTGCTTGGACTTGGCGACGTCTCCAGCGATCTCCTGGATTCTGAGAGTGTCCTTCTTCTCGGCAGTCTTGTCAGCGAACAATCCCTTCTTTCCCTTCTCGGCATTAGCTTCGGCGGCCAGAAGAAGATCATACTCGCAGGATCGGTTCTCATCATCGGCACGGTGACGGACAACCTTGCTCAATCCACGGCTGATAAGTCCTTCGGCAATGTT</canonical_amplicon>
		<polymorphic_amplicon>TACAACTTACCTTCCTCCTCTCTGAAGGTATGGGAGGAACTGCTTGGACTTGGCGACGTCTCCAGCGATCTCSTGGATTCTGAGAGTGTCCTTCTTCTCGGCAGTCTTGTCAGCGAACAATCCCTTCTTTCCCTTCTCGGCATTAGCTTCGGCGGCCAGAAGAAGATCATACTCGCAGGATCGGTTCTCATCATCGGCACGGTGACGGACAACCTTGCTCAATCCACGGCTGATAAGTCCTTCGGCAATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25466</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>292269</contig_pos>
        <strand>+</strand>
        <context>GTTGTTATCT[A/T]TCTAGAATCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGCATTGATGATATGGAGGAGATTGATGTGGAAGAGTGAGTTGTTATCT</left_flank>
        <right_flank>TCTAGAATCTTCTAGAATCTTTGTTTTTTTTTCAGATTCCCTGTTATATT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGTTTGGAGCTCAGAAACCTGTACAAACACCGCCACCAGCGCCGAAAATACAAGTCAATATTGGTCAGGCAGCTCCAGCTATCGCAGTTGTCCCAGAAACTGTTCCAGTGTCACCAACTCCTTTGACTCCACCACCGGCTGATCCGATTGCTCCGGTTGCTCCACAGCTCACCCGAGAGGAAAGAAGAGCCCAACTGGACCAGCGTATGAAGGAGCTAGAGGAATCATTCCGATTGCAACGTGAGAAAGTGTCTAACGCAGCGAAACAGTCGAAAACAGCTGCTACGATGGCTGCAGAAGCCGCAGAACTGGCCAAAAAAGCTGAGCAATTGAACCAGGAAGCTGTGGAACTCCGCCAAAAGTGTATTGAGGACACGAAGAATGGGAAAGAGGAAATGAGGAAAATGCTGATTGAGAAGCGAGAATTGCAGACGGCAATTGATGAAATGAGCATTGATGATATGGAGGAGATTGATGTGGAAGAGTGAGTTGTTATCTTTCTAGAATCTTCTAGAATCTTTGTTTTTTTTTCAGATTCCCTGTTATATTCTTTGCGACGGTGAAAAAAGCGGAATTTGTTGAGAAGAAAATTCCAAAGCAAGAGCCTGCAACTAATGAGAACGGAATTTTGAAGCCTCAGAATCCACCAGCACCCTTGGCTGCTCCAGAAGTCGTTCCAGCTCGTTTGGCAGCTCCAGAAGCCTTGTCGGCTCCAGAAGTCCCGCGTCAAGTAGGGGGACACGAGGCGAGAGCCATGGAGCATGTTCAAGCAACAGCTGAGCAATCATTCAATTCCTCGAATGGTAGGTTTTTAAAGCTTTGAATTTAGCAAATTTCAGTTCTAAATTTGTCATTTAAAATCACAGAATTCCAAAGAAAAAATCTGAAATTCTTAATTTTTCAGGAAATGAAACAAGTGAAAACGTTGAGAATGGAGAAGAGGAAGAAGAGTGCGAAGTTGTAGAAGGAGAAGACGAGTACGATACAGATGAGAATGAA</canonical>
            <polymorphic>GCGTTTGGAGCTCAGAAACCTGTACAAACACCGCCACCAGCGCCGAAAATACAAGTCAATATTGGTCAGGCAGCTCCAGCTATCGCAGTTGTCCCAGAAACTGTTCCAGTGTCACCAACTCCTTTGACTCCACCACCGGCTGATCCGATTGCTCCGGTTGCTCCACAGCTCACCCGAGAGGAAAGAAGAGCCCAACTGGACCAGCGTATGAAGGAGCTAGAGGAATCATTCCGATTGCAACGTGAGAAAGTGTCTAACGCAGCGAAACAGTCGAAAACAGCTGCTACGATGGCTGCAGAAGCCGCAGAACTGGCCAAAAAAGCTGAGCAATTGAACCAGGAAGCTGTGGAACTCCGCCAAAAGTGTATTGAGGACACGAAGAATGGGAAAGAGGAAATGAGGAAAATGCTGATTGAGAAGCGAGAATTGCAGACGGCAATTGATGAAATGAGCATTGATGATATGGAGGAGATTGATGTGGAAGAGTGAGTTGTTATCTWTCTAGAATCTTCTAGAATCTTTGTTTTTTTTTCAGATTCCCTGTTATATTCTTTGCGACGGTGAAAAAAGCGGAATTTGTTGAGAAGAAAATTCCAAAGCAAGAGCCTGCAACTAATGAGAACGGAATTTTGAAGCCTCAGAATCCACCAGCACCCTTGGCTGCTCCAGAAGTCGTTCCAGCTCGTTTGGCAGCTCCAGAAGCCTTGTCGGCTCCAGAAGTCCCGCGTCAAGTAGGGGGACACGAGGCGAGAGCCATGGAGCATGTTCAAGCAACAGCTGAGCAATCATTCAATTCCTCGAATGGTAGGTTTTTAAAGCTTTGAATTTAGCAAATTTCAGTTCTAAATTTGTCATTTAAAATCACAGAATTCCAAAGAAAAAATCTGAAATTCTTAATTTTTCAGGAAATGAAACAAGTGAAAACGTTGAGAATGGAGAAGAGGAAGAAGAGTGCGAAGTTGTAGAAGGAGAAGACGAGTACGATACAGATGAGAATGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAGGAAATGAGGAAAATG</pcr_primer_p1>
		<pcr_primer_p2>TCAAAATTCCGTTCTCATTAGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAGAGGAAATGAGGAAAATGCTGATTGAGAAGCGAGAATTGCAGACGGCAATTGATGAAATGAGCATTGATGATATGGAGGAGATTGATGTGGAAGAGTGAGTTGTTATCTTTCTAGAATCTTCTAGAATCTTTGTTTTTTTTTCAGATTCCCTGTTATATTCTTTGCGACGGTGAAAAAAGCGGAATTTGTTGAGAAGAAAATTCCAAAGCAAGAGCCTGCAACTAATGAGAACGGAATTTTGA</canonical_amplicon>
		<polymorphic_amplicon>AAAGAGGAAATGAGGAAAATGCTGATTGAGAAGCGAGAATTGCAGACGGCAATTGATGAAATGAGCATTGATGATATGGAGGAGATTGATGTGGAAGAGTGAGTTGTTATCTWTCTAGAATCTTCTAGAATCTTTGTTTTTTTTTCAGATTCCCTGTTATATTCTTTGCGACGGTGAAAAAAGCGGAATTTGTTGAGAAGAAAATTCCAAAGCAAGAGCCTGCAACTAATGAGAACGGAATTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25467</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>331176</contig_pos>
        <strand>+</strand>
        <context>GATATTTTCC[A/G]AAAAAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTTCCAAATTTCAGCAAAACAATTGCGAATCAGACTTGATATTTTCC</left_flank>
        <right_flank>AAAAAAAAAAAACCAGAAATTGTTGAAAATAACTCAAAAATCAGGTATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAGCTTAAAGGCGCACATGATAATACAAATGGGTCTCGAAGCGATTTCCCAGTGTAGTCCTCTCGGACAAAGTGTTGGGTGGTTCGGAATTATTTTTTCAAATTTTAGCCCAAAAATTCGCGAATCCGGCTTGAAATTTTCCGAAAAAATCTGAAAATTATTGGAAATCAGTTCAAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAAAAACGATGAGATTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCCTAAATTTGGAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTCTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAATTTTTTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATTGCGAATCAGACTTGATATTTTCCAAAAAAAAAAAAACCAGAAATTGTTGAAAATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAGCTCAATTTTCGATTCACAACGCTCAAAATGAATCTGAACAGCCCTGAAGCTGTGTTATATCCTGAATGTGTACTTCTCTCCACTAAAAATTATATTCTGGACAGTGTAAGTGCGCTATTTGTGTTGTCATTTTTGTCAAAAGATCGCGTTTTTGTTTCAGATAACAATGAAAATGTCATCAGATTTATCGCAATTCGAAGCGCCAACGAGTAACGTAGGAGATAAAGAAGCAGAGCTGGTTGCCAAATTATTTGAAAGTTCAAATTTGAGTCTAAGTATGAAAAAAAAGTGCTCCATTGATAAATATTAAATTTTTATTTGAAGGAATGTATGGATCGTCTGAAGAGCTGGCAGAAAACGTGAAGATCTATAGAAGCTCTCCTGGAAGTGGAGTGTACGCCGATGCGAATGGCCATCCTATG</canonical>
            <polymorphic>AAAAAGCTTAAAGGCGCACATGATAATACAAATGGGTCTCGAAGCGATTTCCCAGTGTAGTCCTCTCGGACAAAGTGTTGGGTGGTTCGGAATTATTTTTTCAAATTTTAGCCCAAAAATTCGCGAATCCGGCTTGAAATTTTCCGAAAAAATCTGAAAATTATTGGAAATCAGTTCAAAATCGGATATTTTGTGAATAAACGGGATAAAACTGGGAATTCAGGGAAAAAAAACAAAAAAATATTGCTTTATTTTCTCCATTTGAGCTGAAAAACGATGAGATTCTGCGAGAAAAAACGAGGAAAATGAGAGGAAATCATCAAGTTCAATCCTAAATTTGGAAAACTCCCGCCTAAATGCTTAAAGGCGCACATGATAATACCAATCGGTCTCGAAGCGATTTCACAGTGTAGTCCTCTCGGACAATTTTTTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATTGCGAATCAGACTTGATATTTTCCRAAAAAAAAAAAACCAGAAATTGTTGAAAATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAGCTCAATTTTCGATTCACAACGCTCAAAATGAATCTGAACAGCCCTGAAGCTGTGTTATATCCTGAATGTGTACTTCTCTCCACTAAAAATTATATTCTGGACAGTGTAAGTGCGCTATTTGTGTTGTCATTTTTGTCAAAAGATCGCGTTTTTGTTTCAGATAACAATGAAAATGTCATCAGATTTATCGCAATTCGAAGCGCCAACGAGTAACGTAGGAGATAAAGAAGCAGAGCTGGTTGCCAAATTATTTGAAAGTTCAAATTTGAGTCTAAGTATGAAAAAAAAGTGCTCCATTGATAAATATTAAATTTTTATTTGAAGGAATGTATGGATCGTCTGAAGAGCTGGCAGAAAACGTGAAGATCTATAGAAGCTCTCCTGGAAGTGGAGTGTACGCCGATGCGAATGGCCATCCTATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATTTCACAGTGTAGTCCTCT</pcr_primer_p1>
		<pcr_primer_p2>ATTCAGGATATAACACAGCTTCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGATTTCACAGTGTAGTCCTCTCGGACAATTTTTTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATTGCGAATCAGACTTGATATTTTCCAAAAAAAAAAAAACCAGAAATTGTTGAAAATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAGCTCAATTTTCGATTCACAACGCTCAAAATGAATCTGAACAGCCCTGAAGCTGTGTTATATCCTGAAT</canonical_amplicon>
		<polymorphic_amplicon>CGATTTCACAGTGTAGTCCTCTCGGACAATTTTTTTGGCGGTCGAAATTATAATTTTTCCAAATTTCAGCAAAACAATTGCGAATCAGACTTGATATTTTCCRAAAAAAAAAAAACCAGAAATTGTTGAAAATAACTCAAAAATCAGGTATTTGAATATTCAAAGAGAATATCCTTTTCAGCTCAATTTTCGATTCACAACGCTCAAAATGAATCTGAACAGCCCTGAAGCTGTGTTATATCCTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25471</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>336845</contig_pos>
        <strand>+</strand>
        <context>TACCATAAAT[C/T]CTGACTTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAACAAAAATGACTAGATAACTTTCGTCAATTCTTTGAATACCATAAAT</left_flank>
        <right_flank>CTGACTTCCAACTTTGAGTTTTTCCAACTGAGAGACAATTCATATTGATT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGTTGTAAACTTAATACTAATTTACTTCTTTACCTTTCTGAATACTTGAATTCAGCCCCATTGTTGTAAGGCTTTCACGGGGGTCATATTAAATTAACTATATCAAATCTACCGTAAAACCTGCTAATAGAAGTGCCTCTCTTTTACTTGGAGCCAATTTTTCTCGGTTCCTGTGAATGATATCAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGCAGTGTATTGTCAGTTTGCACATTTTTGACACCTTGCATAGAAATTGAGATAATTGAGCTTAAACTTGGCAGTATGGGGCTCATCTATTACAGATTTTTCGGTGATCTTCTTTGTAGATTTTACATTCAATGAAGCTGACTGTCAGGCCTCAATGAATATTATTTGTTAAAGGCAAAAAAAGTAATTTTCAAGCAAATTTTTGATTTGAAAAAAAAGATTCGCAACAACAAAAATGACTAGATAACTTTCGTCAATTCTTTGAATACCATAAATTCTGACTTCCAACTTTGAGTTTTTCCAACTGAGAGACAATTCATATTGATTCCTGTAAAAGGTATAAAAAAGTAGTTCACTGAAAAATTCTATTTGAGGTGTTCTATTATCAATTCAAAAAACTGAAACTTCTGGAACCACTTGGTTCTTAACCAACCAATAAAAGTCATTCATTATCAAAATAATAAAAATACAAAAAGAGTTATGAACAAGGTGATAACAATCGCAGCATTGTAATAGAGAATCGATACTCCTCTTTTCAATGCAAACACTCTTTCCTTCTATGCTTCTTCTTCTTCTTTTCCCTTGTATAGTCTGATTCCTTTTTCGTTCTATAACAAGAGTTTTCTCTCATCTTTATTGCACAATTTATGTGTTTTGCCGATGAATCATCGATGAACATCTTTCTTAAACATGCTAAATAAACGCAGTCGTGCTTAGTTTTAAATAAACGGCTCATTTTTGAGTGCTCTTCTTTTAATATCGCCTCATTTCGGTGCT</canonical>
            <polymorphic>ACGTTGTAAACTTAATACTAATTTACTTCTTTACCTTTCTGAATACTTGAATTCAGCCCCATTGTTGTAAGGCTTTCACGGGGGTCATATTAAATTAACTATATCAAATCTACCGTAAAACCTGCTAATAGAAGTGCCTCTCTTTTACTTGGAGCCAATTTTTCTCGGTTCCTGTGAATGATATCAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGCAGTGTATTGTCAGTTTGCACATTTTTGACACCTTGCATAGAAATTGAGATAATTGAGCTTAAACTTGGCAGTATGGGGCTCATCTATTACAGATTTTTCGGTGATCTTCTTTGTAGATTTTACATTCAATGAAGCTGACTGTCAGGCCTCAATGAATATTATTTGTTAAAGGCAAAAAAAGTAATTTTCAAGCAAATTTTTGATTTGAAAAAAAAGATTCGCAACAACAAAAATGACTAGATAACTTTCGTCAATTCTTTGAATACCATAAATYCTGACTTCCAACTTTGAGTTTTTCCAACTGAGAGACAATTCATATTGATTCCTGTAAAAGGTATAAAAAAGTAGTTCACTGAAAAATTCTATTTGAGGTGTTCTATTATCAATTCAAAAAACTGAAACTTCTGGAACCACTTGGTTCTTAACCAACCAATAAAAGTCATTCATTATCAAAATAATAAAAATACAAAAAGAGTTATGAACAAGGTGATAACAATCGCAGCATTGTAATAGAGAATCGATACTCCTCTTTTCAATGCAAACACTCTTTCCTTCTATGCTTCTTCTTCTTCTTTTCCCTTGTATAGTCTGATTCCTTTTTCGTTCTATAACAAGAGTTTTCTCTCATCTTTATTGCACAATTTATGTGTTTTGCCGATGAATCATCGATGAACATCTTTCTTAAACATGCTAAATAAACGCAGTCGTGCTTAGTTTTAAATAAACGGCTCATTTTTGAGTGCTCTTCTTTTAATATCGCCTCATTTCGGTGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>416 371 88 76 49</canonical_bands>
                <polymorphic_bands>416 371 164 49</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>462 314 184 40</canonical_bands>
                <polymorphic_bands>776 184 40</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>255 135 132 64 63 58 48 48 43 40 30 26 19 18 12 9</canonical_bands>
                <polymorphic_bands>255 135 132 64 63 58 58 48 48 43 30 26 19 12 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGCAAATTTTTGATTTGAA</pcr_primer_p1>
		<pcr_primer_p2>GACTTTTATTGGTTGGTTAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CAAGCAAATTTTTGATTTGAAAAAAAAGATTCGCAACAACAAAAATGACTAGATAACTTTCGTCAATTCTTTGAATACCATAAATTCTGACTTCCAACTTTGAGTTTTTCCAACTGAGAGACAATTCATATTGATTCCTGTAAAAGGTATAAAAAAGTAGTTCACTGAAAAATTCTATTTGAGGTGTTCTATTATCAATTCAAAAAACTGAAACTTCTGGAACCACTTGGTTCTTAACCAACCAATAAAAGTC</canonical_amplicon>
		<polymorphic_amplicon>CAAGCAAATTTTTGATTTGAAAAAAAAGATTCGCAACAACAAAAATGACTAGATAACTTTCGTCAATTCTTTGAATACCATAAATYCTGACTTCCAACTTTGAGTTTTTCCAACTGAGAGACAATTCATATTGATTCCTGTAAAAGGTATAAAAAAGTAGTTCACTGAAAAATTCTATTTGAGGTGTTCTATTATCAATTCAAAAAACTGAAACTTCTGGAACCACTTGGTTCTTAACCAACCAATAAAAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25472</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>357396</contig_pos>
        <strand>+</strand>
        <context>AAGTGATGAT[A/G]CACCGAGGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGTCCGTCCCAAAAAACCGAAACATCGGGAGCGACCCCAAAGTGATGAT</left_flank>
        <right_flank>CACCGAGGATTCCGGATCGTCCGGTGATGGTAAATGGGATGCGGTTGCCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCTCAACCTGTTTTAAAACAATTTTATTTTCAATTAATTTTGAAATTCAAGATTTTATAGTAGTTTTATTATGCTTATGTGTATAACCAGCCGTAATTGACCCTTTTGTCTTGTAAATACCAGCTGCTCGCGATTGCACAAAAAACGCATCAAAAATTTTCGAGCTGTCCGCAAACACCGCCACGCCAACTTGCGGAAACTGTCGTCAATTATTTTCTCTTCACGTGCTGTTTGGGTTCTCGATTCAGGTTTCTATTTGTCTGTCAAGCCAATACCTTGTGTTCTCAAATGACTCATACAAAATCGGTGGAAAATAGACTCTTTGTTCACTAAAAAACAACACATTGAGCAACGGTCATTGAGCGATTTTCCCATTTTTCTTTGGTTTTCTTACTGTAGATAGCATACTCCTGGAAACATCGATTTTTTAGATACAAAATGGCGGAGTTGGTCCGTCCCAAAAAACCGAAACATCGGGAGCGACCCCAAAGTGATGATGCACCGAGGATTCCGGATCGTCCGGTGATGGTAAATGGGATGCGGTTGCCAGTGGCTCCTTCGCATTCTATCCAGCATCAACGGGATCGATCAGCATCTCCAGAACCAGAAGAACAGGTACTCAGTGATACCGGCGAATCGATAAATCCCGAGAAAGAAAACGGTAGTATTCAAGATGTGAGGAGCAGTCCCGTTCGTCCAGCGCCACCTCCTCCAGTGAGTTTTTAAATTCATTTAAATAAAACAAATTATTTGACGAAATCATGATTCAGAGAGCAATATCACAAGAACGAGAAGCACCTCCGATTCCTGCCCGAAACCTAGTGTTTCCTAGAAGCACGAGTATGGTCGCAGAGTCTACCAGAGAGCCAACTCCAGTGGTGCTCCCGAAAAGAAGTGTAGCGGTGGCGCCATATCCAACCGTCCCTGAATTGGCAGAACTTCCTTCATACACAGCTGCACTTAAGCATCCTCAAGTCTATCCAGCTGTAGACGGTGGAC</canonical>
            <polymorphic>CCCTCAACCTGTTTTAAAACAATTTTATTTTCAATTAATTTTGAAATTCAAGATTTTATAGTAGTTTTATTATGCTTATGTGTATAACCAGCCGTAATTGACCCTTTTGTCTTGTAAATACCAGCTGCTCGCGATTGCACAAAAAACGCATCAAAAATTTTCGAGCTGTCCGCAAACACCGCCACGCCAACTTGCGGAAACTGTCGTCAATTATTTTCTCTTCACGTGCTGTTTGGGTTCTCGATTCAGGTTTCTATTTGTCTGTCAAGCCAATACCTTGTGTTCTCAAATGACTCATACAAAATCGGTGGAAAATAGACTCTTTGTTCACTAAAAAACAACACATTGAGCAACGGTCATTGAGCGATTTTCCCATTTTTCTTTGGTTTTCTTACTGTAGATAGCATACTCCTGGAAACATCGATTTTTTAGATACAAAATGGCGGAGTTGGTCCGTCCCAAAAAACCGAAACATCGGGAGCGACCCCAAAGTGATGATRCACCGAGGATTCCGGATCGTCCGGTGATGGTAAATGGGATGCGGTTGCCAGTGGCTCCTTCGCATTCTATCCAGCATCAACGGGATCGATCAGCATCTCCAGAACCAGAAGAACAGGTACTCAGTGATACCGGCGAATCGATAAATCCCGAGAAAGAAAACGGTAGTATTCAAGATGTGAGGAGCAGTCCCGTTCGTCCAGCGCCACCTCCTCCAGTGAGTTTTTAAATTCATTTAAATAAAACAAATTATTTGACGAAATCATGATTCAGAGAGCAATATCACAAGAACGAGAAGCACCTCCGATTCCTGCCCGAAACCTAGTGTTTCCTAGAAGCACGAGTATGGTCGCAGAGTCTACCAGAGAGCCAACTCCAGTGGTGCTCCCGAAAAGAAGTGTAGCGGTGGCGCCATATCCAACCGTCCCTGAATTGGCAGAACTTCCTTCATACACAGCTGCACTTAAGCATCCTCAAGTCTATCCAGCTGTAGACGGTGGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>458 363 137 42</canonical_bands>
                <polymorphic_bands>821 137 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATTTTTCTTTGGTTTTCTTAC</pcr_primer_p1>
		<pcr_primer_p2>AGTACCTGTTCTTCTGGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCATTTTTCTTTGGTTTTCTTACTGTAGATAGCATACTCCTGGAAACATCGATTTTTTAGATACAAAATGGCGGAGTTGGTCCGTCCCAAAAAACCGAAACATCGGGAGCGACCCCAAAGTGATGATGCACCGAGGATTCCGGATCGTCCGGTGATGGTAAATGGGATGCGGTTGCCAGTGGCTCCTTCGCATTCTATCCAGCATCAACGGGATCGATCAGCATCTCCAGAACCAGAAGAACAGGTACT</canonical_amplicon>
		<polymorphic_amplicon>CCATTTTTCTTTGGTTTTCTTACTGTAGATAGCATACTCCTGGAAACATCGATTTTTTAGATACAAAATGGCGGAGTTGGTCCGTCCCAAAAAACCGAAACATCGGGAGCGACCCCAAAGTGATGATRCACCGAGGATTCCGGATCGTCCGGTGATGGTAAATGGGATGCGGTTGCCAGTGGCTCCTTCGCATTCTATCCAGCATCAACGGGATCGATCAGCATCTCCAGAACCAGAAGAACAGGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25473</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>357449</contig_pos>
        <strand>+</strand>
        <context>GGTTGCCAGT[G/T]GCTCCTTCGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCGAGGATTCCGGATCGTCCGGTGATGGTAAATGGGATGCGGTTGCCAGT</left_flank>
        <right_flank>GCTCCTTCGCATTCTATCCAGCATCAACGGGATCGATCAGCATCTCCAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTATAGTAGTTTTATTATGCTTATGTGTATAACCAGCCGTAATTGACCCTTTTGTCTTGTAAATACCAGCTGCTCGCGATTGCACAAAAAACGCATCAAAAATTTTCGAGCTGTCCGCAAACACCGCCACGCCAACTTGCGGAAACTGTCGTCAATTATTTTCTCTTCACGTGCTGTTTGGGTTCTCGATTCAGGTTTCTATTTGTCTGTCAAGCCAATACCTTGTGTTCTCAAATGACTCATACAAAATCGGTGGAAAATAGACTCTTTGTTCACTAAAAAACAACACATTGAGCAACGGTCATTGAGCGATTTTCCCATTTTTCTTTGGTTTTCTTACTGTAGATAGCATACTCCTGGAAACATCGATTTTTTAGATACAAAATGGCGGAGTTGGTCCGTCCCAAAAAACCGAAACATCGGGAGCGACCCCAAAGTGATGATGCACCGAGGATTCCGGATCGTCCGGTGATGGTAAATGGGATGCGGTTGCCAGTGGCTCCTTCGCATTCTATCCAGCATCAACGGGATCGATCAGCATCTCCAGAACCAGAAGAACAGGTACTCAGTGATACCGGCGAATCGATAAATCCCGAGAAAGAAAACGGTAGTATTCAAGATGTGAGGAGCAGTCCCGTTCGTCCAGCGCCACCTCCTCCAGTGAGTTTTTAAATTCATTTAAATAAAACAAATTATTTGACGAAATCATGATTCAGAGAGCAATATCACAAGAACGAGAAGCACCTCCGATTCCTGCCCGAAACCTAGTGTTTCCTAGAAGCACGAGTATGGTCGCAGAGTCTACCAGAGAGCCAACTCCAGTGGTGCTCCCGAAAAGAAGTGTAGCGGTGGCGCCATATCCAACCGTCCCTGAATTGGCAGAACTTCCTTCATACACAGCTGCACTTAAGCATCCTCAAGTCTATCCAGCTGTAGACGGTGGACAGTTACACCATTCTCGTTCTGCTGCTGCCATCCCGGTGAGTTTTTGAAGGGGT</canonical>
            <polymorphic>TTTTATAGTAGTTTTATTATGCTTATGTGTATAACCAGCCGTAATTGACCCTTTTGTCTTGTAAATACCAGCTGCTCGCGATTGCACAAAAAACGCATCAAAAATTTTCGAGCTGTCCGCAAACACCGCCACGCCAACTTGCGGAAACTGTCGTCAATTATTTTCTCTTCACGTGCTGTTTGGGTTCTCGATTCAGGTTTCTATTTGTCTGTCAAGCCAATACCTTGTGTTCTCAAATGACTCATACAAAATCGGTGGAAAATAGACTCTTTGTTCACTAAAAAACAACACATTGAGCAACGGTCATTGAGCGATTTTCCCATTTTTCTTTGGTTTTCTTACTGTAGATAGCATACTCCTGGAAACATCGATTTTTTAGATACAAAATGGCGGAGTTGGTCCGTCCCAAAAAACCGAAACATCGGGAGCGACCCCAAAGTGATGATGCACCGAGGATTCCGGATCGTCCGGTGATGGTAAATGGGATGCGGTTGCCAGTKGCTCCTTCGCATTCTATCCAGCATCAACGGGATCGATCAGCATCTCCAGAACCAGAAGAACAGGTACTCAGTGATACCGGCGAATCGATAAATCCCGAGAAAGAAAACGGTAGTATTCAAGATGTGAGGAGCAGTCCCGTTCGTCCAGCGCCACCTCCTCCAGTGAGTTTTTAAATTCATTTAAATAAAACAAATTATTTGACGAAATCATGATTCAGAGAGCAATATCACAAGAACGAGAAGCACCTCCGATTCCTGCCCGAAACCTAGTGTTTCCTAGAAGCACGAGTATGGTCGCAGAGTCTACCAGAGAGCCAACTCCAGTGGTGCTCCCGAAAAGAAGTGTAGCGGTGGCGCCATATCCAACCGTCCCTGAATTGGCAGAACTTCCTTCATACACAGCTGCACTTAAGCATCCTCAAGTCTATCCAGCTGTAGACGGTGGACAGTTACACCATTCTCGTTCTGCTGCTGCCATCCCGGTGAGTTTTTGAAGGGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 353 145</canonical_bands>
                <polymorphic_bands>855 145</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>313 285 104 88 68 41 38 33 30</canonical_bands>
                <polymorphic_bands>598 104 88 68 41 38 33 30</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>151 73 65 57 54 53 46 41 40 39 37 31 29 28 27 27 27 24 20 16 15 15 13 13 12 10 8 8 8 6 4 3</canonical_bands>
                <polymorphic_bands>151 100 65 57 54 53 46 41 40 39 37 31 29 28 27 27 24 20 16 15 15 13 13 12 10 8 8 8 6 4 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATTTTTCTTTGGTTTTCTTAC</pcr_primer_p1>
		<pcr_primer_p2>AGTACCTGTTCTTCTGGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCATTTTTCTTTGGTTTTCTTACTGTAGATAGCATACTCCTGGAAACATCGATTTTTTAGATACAAAATGGCGGAGTTGGTCCGTCCCAAAAAACCGAAACATCGGGAGCGACCCCAAAGTGATGATGCACCGAGGATTCCGGATCGTCCGGTGATGGTAAATGGGATGCGGTTGCCAGTGGCTCCTTCGCATTCTATCCAGCATCAACGGGATCGATCAGCATCTCCAGAACCAGAAGAACAGGTACT</canonical_amplicon>
		<polymorphic_amplicon>CCATTTTTCTTTGGTTTTCTTACTGTAGATAGCATACTCCTGGAAACATCGATTTTTTAGATACAAAATGGCGGAGTTGGTCCGTCCCAAAAAACCGAAACATCGGGAGCGACCCCAAAGTGATGATGCACCGAGGATTCCGGATCGTCCGGTGATGGTAAATGGGATGCGGTTGCCAGTKGCTCCTTCGCATTCTATCCAGCATCAACGGGATCGATCAGCATCTCCAGAACCAGAAGAACAGGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25474</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>357482</contig_pos>
        <strand>+</strand>
        <context>ATCAACGGGA[G/T]CGATCAGCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGGATGCGGTTGCCAGTGGCTCCTTCGCATTCTATCCAGCATCAACGGGA</left_flank>
        <right_flank>CGATCAGCATCTCCAGAACCAGAAGAACAGGTACTCAGTGATACCGGCGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCAGCCGTAATTGACCCTTTTGTCTTGTAAATACCAGCTGCTCGCGATTGCACAAAAAACGCATCAAAAATTTTCGAGCTGTCCGCAAACACCGCCACGCCAACTTGCGGAAACTGTCGTCAATTATTTTCTCTTCACGTGCTGTTTGGGTTCTCGATTCAGGTTTCTATTTGTCTGTCAAGCCAATACCTTGTGTTCTCAAATGACTCATACAAAATCGGTGGAAAATAGACTCTTTGTTCACTAAAAAACAACACATTGAGCAACGGTCATTGAGCGATTTTCCCATTTTTCTTTGGTTTTCTTACTGTAGATAGCATACTCCTGGAAACATCGATTTTTTAGATACAAAATGGCGGAGTTGGTCCGTCCCAAAAAACCGAAACATCGGGAGCGACCCCAAAGTGATGATGCACCGAGGATTCCGGATCGTCCGGTGATGGTAAATGGGATGCGGTTGCCAGTGGCTCCTTCGCATTCTATCCAGCATCAACGGGATCGATCAGCATCTCCAGAACCAGAAGAACAGGTACTCAGTGATACCGGCGAATCGATAAATCCCGAGAAAGAAAACGGTAGTATTCAAGATGTGAGGAGCAGTCCCGTTCGTCCAGCGCCACCTCCTCCAGTGAGTTTTTAAATTCATTTAAATAAAACAAATTATTTGACGAAATCATGATTCAGAGAGCAATATCACAAGAACGAGAAGCACCTCCGATTCCTGCCCGAAACCTAGTGTTTCCTAGAAGCACGAGTATGGTCGCAGAGTCTACCAGAGAGCCAACTCCAGTGGTGCTCCCGAAAAGAAGTGTAGCGGTGGCGCCATATCCAACCGTCCCTGAATTGGCAGAACTTCCTTCATACACAGCTGCACTTAAGCATCCTCAAGTCTATCCAGCTGTAGACGGTGGACAGTTACACCATTCTCGTTCTGCTGCTGCCATCCCGGTGAGTTTTTGAAGGGGTACTTCGACCAAAATGTATGAAAATATGTAAATT</canonical>
            <polymorphic>ACCAGCCGTAATTGACCCTTTTGTCTTGTAAATACCAGCTGCTCGCGATTGCACAAAAAACGCATCAAAAATTTTCGAGCTGTCCGCAAACACCGCCACGCCAACTTGCGGAAACTGTCGTCAATTATTTTCTCTTCACGTGCTGTTTGGGTTCTCGATTCAGGTTTCTATTTGTCTGTCAAGCCAATACCTTGTGTTCTCAAATGACTCATACAAAATCGGTGGAAAATAGACTCTTTGTTCACTAAAAAACAACACATTGAGCAACGGTCATTGAGCGATTTTCCCATTTTTCTTTGGTTTTCTTACTGTAGATAGCATACTCCTGGAAACATCGATTTTTTAGATACAAAATGGCGGAGTTGGTCCGTCCCAAAAAACCGAAACATCGGGAGCGACCCCAAAGTGATGATGCACCGAGGATTCCGGATCGTCCGGTGATGGTAAATGGGATGCGGTTGCCAGTGGCTCCTTCGCATTCTATCCAGCATCAACGGGAKCGATCAGCATCTCCAGAACCAGAAGAACAGGTACTCAGTGATACCGGCGAATCGATAAATCCCGAGAAAGAAAACGGTAGTATTCAAGATGTGAGGAGCAGTCCCGTTCGTCCAGCGCCACCTCCTCCAGTGAGTTTTTAAATTCATTTAAATAAAACAAATTATTTGACGAAATCATGATTCAGAGAGCAATATCACAAGAACGAGAAGCACCTCCGATTCCTGCCCGAAACCTAGTGTTTCCTAGAAGCACGAGTATGGTCGCAGAGTCTACCAGAGAGCCAACTCCAGTGGTGCTCCCGAAAAGAAGTGTAGCGGTGGCGCCATATCCAACCGTCCCTGAATTGGCAGAACTTCCTTCATACACAGCTGCACTTAAGCATCCTCAAGTCTATCCAGCTGTAGACGGTGGACAGTTACACCATTCTCGTTCTGCTGCTGCCATCCCGGTGAGTTTTTGAAGGGGTACTTCGACCAAAATGTATGAAAATATGTAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>448 335 165 52</canonical_bands>
                <polymorphic_bands>448 335 217</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>499 428 69 4</canonical_bands>
                <polymorphic_bands>499 428 73</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>419 180 165 80 76 52 28</canonical_bands>
                <polymorphic_bands>419 217 180 80 76 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGATACAAAATGGCGGAGT</pcr_primer_p1>
		<pcr_primer_p2>CACATCTTGAATACTACCGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGATACAAAATGGCGGAGTTGGTCCGTCCCAAAAAACCGAAACATCGGGAGCGACCCCAAAGTGATGATGCACCGAGGATTCCGGATCGTCCGGTGATGGTAAATGGGATGCGGTTGCCAGTGGCTCCTTCGCATTCTATCCAGCATCAACGGGATCGATCAGCATCTCCAGAACCAGAAGAACAGGTACTCAGTGATACCGGCGAATCGATAAATCCCGAGAAAGAAAACGGTAGTATTCAAGATGTG</canonical_amplicon>
		<polymorphic_amplicon>TAGATACAAAATGGCGGAGTTGGTCCGTCCCAAAAAACCGAAACATCGGGAGCGACCCCAAAGTGATGATGCACCGAGGATTCCGGATCGTCCGGTGATGGTAAATGGGATGCGGTTGCCAGTGGCTCCTTCGCATTCTATCCAGCATCAACGGGAKCGATCAGCATCTCCAGAACCAGAAGAACAGGTACTCAGTGATACCGGCGAATCGATAAATCCCGAGAAAGAAAACGGTAGTATTCAAGATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25475</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>357524</contig_pos>
        <strand>+</strand>
        <context>TACTCAGTGA[C/T]ACCGGCGAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAACGGGATCGATCAGCATCTCCAGAACCAGAAGAACAGGTACTCAGTGA</left_flank>
        <right_flank>ACCGGCGAATCGATAAATCCCGAGAAAGAAAACGGTAGTATTCAAGATGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGCGATTGCACAAAAAACGCATCAAAAATTTTCGAGCTGTCCGCAAACACCGCCACGCCAACTTGCGGAAACTGTCGTCAATTATTTTCTCTTCACGTGCTGTTTGGGTTCTCGATTCAGGTTTCTATTTGTCTGTCAAGCCAATACCTTGTGTTCTCAAATGACTCATACAAAATCGGTGGAAAATAGACTCTTTGTTCACTAAAAAACAACACATTGAGCAACGGTCATTGAGCGATTTTCCCATTTTTCTTTGGTTTTCTTACTGTAGATAGCATACTCCTGGAAACATCGATTTTTTAGATACAAAATGGCGGAGTTGGTCCGTCCCAAAAAACCGAAACATCGGGAGCGACCCCAAAGTGATGATGCACCGAGGATTCCGGATCGTCCGGTGATGGTAAATGGGATGCGGTTGCCAGTGGCTCCTTCGCATTCTATCCAGCATCAACGGGATCGATCAGCATCTCCAGAACCAGAAGAACAGGTACTCAGTGATACCGGCGAATCGATAAATCCCGAGAAAGAAAACGGTAGTATTCAAGATGTGAGGAGCAGTCCCGTTCGTCCAGCGCCACCTCCTCCAGTGAGTTTTTAAATTCATTTAAATAAAACAAATTATTTGACGAAATCATGATTCAGAGAGCAATATCACAAGAACGAGAAGCACCTCCGATTCCTGCCCGAAACCTAGTGTTTCCTAGAAGCACGAGTATGGTCGCAGAGTCTACCAGAGAGCCAACTCCAGTGGTGCTCCCGAAAAGAAGTGTAGCGGTGGCGCCATATCCAACCGTCCCTGAATTGGCAGAACTTCCTTCATACACAGCTGCACTTAAGCATCCTCAAGTCTATCCAGCTGTAGACGGTGGACAGTTACACCATTCTCGTTCTGCTGCTGCCATCCCGGTGAGTTTTTGAAGGGGTACTTCGACCAAAATGTATGAAAATATGTAAATTCAAATATAAAAATTAAAGAAAAAATTCGAAAAAAAAACTGCA</canonical>
            <polymorphic>TCGCGATTGCACAAAAAACGCATCAAAAATTTTCGAGCTGTCCGCAAACACCGCCACGCCAACTTGCGGAAACTGTCGTCAATTATTTTCTCTTCACGTGCTGTTTGGGTTCTCGATTCAGGTTTCTATTTGTCTGTCAAGCCAATACCTTGTGTTCTCAAATGACTCATACAAAATCGGTGGAAAATAGACTCTTTGTTCACTAAAAAACAACACATTGAGCAACGGTCATTGAGCGATTTTCCCATTTTTCTTTGGTTTTCTTACTGTAGATAGCATACTCCTGGAAACATCGATTTTTTAGATACAAAATGGCGGAGTTGGTCCGTCCCAAAAAACCGAAACATCGGGAGCGACCCCAAAGTGATGATGCACCGAGGATTCCGGATCGTCCGGTGATGGTAAATGGGATGCGGTTGCCAGTGGCTCCTTCGCATTCTATCCAGCATCAACGGGATCGATCAGCATCTCCAGAACCAGAAGAACAGGTACTCAGTGAYACCGGCGAATCGATAAATCCCGAGAAAGAAAACGGTAGTATTCAAGATGTGAGGAGCAGTCCCGTTCGTCCAGCGCCACCTCCTCCAGTGAGTTTTTAAATTCATTTAAATAAAACAAATTATTTGACGAAATCATGATTCAGAGAGCAATATCACAAGAACGAGAAGCACCTCCGATTCCTGCCCGAAACCTAGTGTTTCCTAGAAGCACGAGTATGGTCGCAGAGTCTACCAGAGAGCCAACTCCAGTGGTGCTCCCGAAAAGAAGTGTAGCGGTGGCGCCATATCCAACCGTCCCTGAATTGGCAGAACTTCCTTCATACACAGCTGCACTTAAGCATCCTCAAGTCTATCCAGCTGTAGACGGTGGACAGTTACACCATTCTCGTTCTGCTGCTGCCATCCCGGTGAGTTTTTGAAGGGGTACTTCGACCAAAATGTATGAAAATATGTAAATTCAAATATAAAAATTAAAGAAAAAATTCGAAAAAAAAACTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATACAAAATGGCGGAGTT</pcr_primer_p1>
		<pcr_primer_p2>CTCCTCACATCTTGAATACTACC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AGATACAAAATGGCGGAGTTGGTCCGTCCCAAAAAACCGAAACATCGGGAGCGACCCCAAAGTGATGATGCACCGAGGATTCCGGATCGTCCGGTGATGGTAAATGGGATGCGGTTGCCAGTGGCTCCTTCGCATTCTATCCAGCATCAACGGGATCGATCAGCATCTCCAGAACCAGAAGAACAGGTACTCAGTGATACCGGCGAATCGATAAATCCCGAGAAAGAAAACGGTAGTATTCAAGATGTGAGGAG</canonical_amplicon>
		<polymorphic_amplicon>AGATACAAAATGGCGGAGTTGGTCCGTCCCAAAAAACCGAAACATCGGGAGCGACCCCAAAGTGATGATGCACCGAGGATTCCGGATCGTCCGGTGATGGTAAATGGGATGCGGTTGCCAGTGGCTCCTTCGCATTCTATCCAGCATCAACGGGATCGATCAGCATCTCCAGAACCAGAAGAACAGGTACTCAGTGAYACCGGCGAATCGATAAATCCCGAGAAAGAAAACGGTAGTATTCAAGATGTGAGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25476</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>357736</contig_pos>
        <strand>+</strand>
        <context>CTAGAAGCAC[A/G]AGTATGGTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAGAAGCACCTCCGATTCCTGCCCGAAACCTAGTGTTTCCTAGAAGCAC</left_flank>
        <right_flank>AGTATGGTCGCAGAGTCTACCAGAGAGCCAACTCCAGTGGTGCTCCCGAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACATTGAGCAACGGTCATTGAGCGATTTTCCCATTTTTCTTTGGTTTTCTTACTGTAGATAGCATACTCCTGGAAACATCGATTTTTTAGATACAAAATGGCGGAGTTGGTCCGTCCCAAAAAACCGAAACATCGGGAGCGACCCCAAAGTGATGATGCACCGAGGATTCCGGATCGTCCGGTGATGGTAAATGGGATGCGGTTGCCAGTGGCTCCTTCGCATTCTATCCAGCATCAACGGGATCGATCAGCATCTCCAGAACCAGAAGAACAGGTACTCAGTGATACCGGCGAATCGATAAATCCCGAGAAAGAAAACGGTAGTATTCAAGATGTGAGGAGCAGTCCCGTTCGTCCAGCGCCACCTCCTCCAGTGAGTTTTTAAATTCATTTAAATAAAACAAATTATTTGACGAAATCATGATTCAGAGAGCAATATCACAAGAACGAGAAGCACCTCCGATTCCTGCCCGAAACCTAGTGTTTCCTAGAAGCACGAGTATGGTCGCAGAGTCTACCAGAGAGCCAACTCCAGTGGTGCTCCCGAAAAGAAGTGTAGCGGTGGCGCCATATCCAACCGTCCCTGAATTGGCAGAACTTCCTTCATACACAGCTGCACTTAAGCATCCTCAAGTCTATCCAGCTGTAGACGGTGGACAGTTACACCATTCTCGTTCTGCTGCTGCCATCCCGGTGAGTTTTTGAAGGGGTACTTCGACCAAAATGTATGAAAATATGTAAATTCAAATATAAAAATTAAAGAAAAAATTCGAAAAAAAAACTGCAAAATCTCGAAAAAAATTGCTTTCTGAAAACTTCTGGAAGGTTCTCGTACCTTTTTTTGAATTTCCTGCCAAACCGAAAACTTTGAAAAATTAGCGGCTTTTTGAAATTTTTCGAGAGAGAAAATGTATTTTTCTTCAATTTTCTGCAAAATTGTTAGACCTTTTTAGGTTTTTCAGCTATTTTTGACCATTCTTTTTTGATCTTTCCGGATT</canonical>
            <polymorphic>ACACATTGAGCAACGGTCATTGAGCGATTTTCCCATTTTTCTTTGGTTTTCTTACTGTAGATAGCATACTCCTGGAAACATCGATTTTTTAGATACAAAATGGCGGAGTTGGTCCGTCCCAAAAAACCGAAACATCGGGAGCGACCCCAAAGTGATGATGCACCGAGGATTCCGGATCGTCCGGTGATGGTAAATGGGATGCGGTTGCCAGTGGCTCCTTCGCATTCTATCCAGCATCAACGGGATCGATCAGCATCTCCAGAACCAGAAGAACAGGTACTCAGTGATACCGGCGAATCGATAAATCCCGAGAAAGAAAACGGTAGTATTCAAGATGTGAGGAGCAGTCCCGTTCGTCCAGCGCCACCTCCTCCAGTGAGTTTTTAAATTCATTTAAATAAAACAAATTATTTGACGAAATCATGATTCAGAGAGCAATATCACAAGAACGAGAAGCACCTCCGATTCCTGCCCGAAACCTAGTGTTTCCTAGAAGCACRAGTATGGTCGCAGAGTCTACCAGAGAGCCAACTCCAGTGGTGCTCCCGAAAAGAAGTGTAGCGGTGGCGCCATATCCAACCGTCCCTGAATTGGCAGAACTTCCTTCATACACAGCTGCACTTAAGCATCCTCAAGTCTATCCAGCTGTAGACGGTGGACAGTTACACCATTCTCGTTCTGCTGCTGCCATCCCGGTGAGTTTTTGAAGGGGTACTTCGACCAAAATGTATGAAAATATGTAAATTCAAATATAAAAATTAAAGAAAAAATTCGAAAAAAAAACTGCAAAATCTCGAAAAAAATTGCTTTCTGAAAACTTCTGGAAGGTTCTCGTACCTTTTTTTGAATTTCCTGCCAAACCGAAAACTTTGAAAAATTAGCGGCTTTTTGAAATTTTTCGAGAGAGAAAATGTATTTTTCTTCAATTTTCTGCAAAATTGTTAGACCTTTTTAGGTTTTTCAGCTATTTTTGACCATTCTTTTTTGATCTTTCCGGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCAGAGAGCAATATCACAAGA</pcr_primer_p1>
		<pcr_primer_p2>GAGAATGGTGTAACTGTCCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCAGAGAGCAATATCACAAGAACGAGAAGCACCTCCGATTCCTGCCCGAAACCTAGTGTTTCCTAGAAGCACGAGTATGGTCGCAGAGTCTACCAGAGAGCCAACTCCAGTGGTGCTCCCGAAAAGAAGTGTAGCGGTGGCGCCATATCCAACCGTCCCTGAATTGGCAGAACTTCCTTCATACACAGCTGCACTTAAGCATCCTCAAGTCTATCCAGCTGTAGACGGTGGACAGTTACACCATTCTC</canonical_amplicon>
		<polymorphic_amplicon>ATTCAGAGAGCAATATCACAAGAACGAGAAGCACCTCCGATTCCTGCCCGAAACCTAGTGTTTCCTAGAAGCACRAGTATGGTCGCAGAGTCTACCAGAGAGCCAACTCCAGTGGTGCTCCCGAAAAGAAGTGTAGCGGTGGCGCCATATCCAACCGTCCCTGAATTGGCAGAACTTCCTTCATACACAGCTGCACTTAAGCATCCTCAAGTCTATCCAGCTGTAGACGGTGGACAGTTACACCATTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25477</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>357823</contig_pos>
        <strand></strand>
        <context>CAACCGTCCC[T/C]YAATTGGCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTGGTGCTCCCGAAAAGAAGTGTAGCGGTGGCGCCATATCCAACCGTCCC</left_flank>
        <right_flank>GAATTGGCAGAACTTCCTTCATACACAGCTGCACTTAAGCATCCTCAAGT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAGATACAAAATGGCGGAGTTGGTCCGTCCCAAAAAACCGAAACATCGGGAGCGACCCCAAAGTGATGATGCACCGAGGATTCCGGATCGTCCGGTGATGGTAAATGGGATGCGGTTGCCAGTGGCTCCTTCGCATTCTATCCAGCATCAACGGGATCGATCAGCATCTCCAGAACCAGAAGAACAGGTACTCAGTGATACCGGCGAATCGATAAATCCCGAGAAAGAAAACGGTAGTATTCAAGATGTGAGGAGCAGTCCCGTTCGTCCAGCGCCACCTCCTCCAGTGAGTTTTTAAATTCATTTAAATAAAACAAATTATTTGACGAAATCATGATTCAGAGAGCAATATCACAAGAACGAGAAGCACCTCCGATTCCTGCCCGAAACCTAGTGTTTCCTAGAAGCACGAGTATGGTCGCAGAGTCTACCAGAGAGCCAACTCCAGTGGTGCTCCCGAAAAGAAGTGTAGCGGTGGCGCCATATCCAACCGTCCCTGAATTGGCAGAACTTCCTTCATACACAGCTGCACTTAAGCATCCTCAAGTCTATCCAGCTGTAGACGGTGGACAGTTACACCATTCTCGTTCTGCTGCTGCCATCCCGGTGAGTTTTTGAAGGGGTACTTCGACCAAAATGTATGAAAATATGTAAATTCAAATATAAAAATTAAAGAAAAAATTCGAAAAAAAAACTGCAAAATCTCGAAAAAAATTGCTTTCTGAAAACTTCTGGAAGGTTCTCGTACCTTTTTTTGAATTTCCTGCCAAACCGAAAACTTTGAAAAATTAGCGGCTTTTTGAAATTTTTCGAGAGAGAAAATGTATTTTTCTTCAATTTTCTGCAAAATTGTTAGACCTTTTTAGGTTTTTCAGCTATTTTTGACCATTCTTTTTTGATCTTTCCGGATTTTTGTCTGAAATTTGACGGAACAGTTTTCATAAAGAATACTGTAGGTTACTGTAGTTTTTTTTGCATACACAATCACGTCAAAATGC</canonical>
            <polymorphic>TTTAGATACAAAATGGCGGAGTTGGTCCGTCCCAAAAAACCGAAACATCGGGAGCGACCCCAAAGTGATGATGCACCGAGGATTCCGGATCGTCCGGTGATGGTAAATGGGATGCGGTTGCCAGTGGCTCCTTCGCATTCTATCCAGCATCAACGGGATCGATCAGCATCTCCAGAACCAGAAGAACAGGTACTCAGTGATACCGGCGAATCGATAAATCCCGAGAAAGAAAACGGTAGTATTCAAGATGTGAGGAGCAGTCCCGTTCGTCCAGCGCCACCTCCTCCAGTGAGTTTTTAAATTCATTTAAATAAAACAAATTATTTGACGAAATCATGATTCAGAGAGCAATATCACAAGAACGAGAAGCACCTCCGATTCCTGCCCGAAACCTAGTGTTTCCTAGAAGCACGAGTATGGTCGCAGAGTCTACCAGAGAGCCAACTCCAGTGGTGCTCCCGAAAAGAAGTGTAGCGGTGGCGCCATATCCAACCGTCCCYGAATTGGCAGAACTTCCTTCATACACAGCTGCACTTAAGCATCCTCAAGTCTATCCAGCTGTAGACGGTGGACAGTTACACCATTCTCGTTCTGCTGCTGCCATCCCGGTGAGTTTTTGAAGGGGTACTTCGACCAAAATGTATGAAAATATGTAAATTCAAATATAAAAATTAAAGAAAAAATTCGAAAAAAAAACTGCAAAATCTCGAAAAAAATTGCTTTCTGAAAACTTCTGGAAGGTTCTCGTACCTTTTTTTGAATTTCCTGCCAAACCGAAAACTTTGAAAAATTAGCGGCTTTTTGAAATTTTTCGAGAGAGAAAATGTATTTTTCTTCAATTTTCTGCAAAATTGTTAGACCTTTTTAGGTTTTTCAGCTATTTTTGACCATTCTTTTTTGATCTTTCCGGATTTTTGTCTGAAATTTGACGGAACAGTTTTCATAAAGAATACTGTAGGTTACTGTAGTTTTTTTTGCATACACAATCACGTCAAAATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCAGAGAGCAATATCACAAGA</pcr_primer_p1>
		<pcr_primer_p2>GAGAATGGTGTAACTGTCCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCAGAGAGCAATATCACAAGAACGAGAAGCACCTCCGATTCCTGCCCGAAACCTAGTGTTTCCTAGAAGCACGAGTATGGTCGCAGAGTCTACCAGAGAGCCAACTCCAGTGGTGCTCCCGAAAAGAAGTGTAGCGGTGGCGCCATATCCAACCGTCCCTGAATTGGCAGAACTTCCTTCATACACAGCTGCACTTAAGCATCCTCAAGTCTATCCAGCTGTAGACGGTGGACAGTTACACCATTCTC</canonical_amplicon>
		<polymorphic_amplicon>ATTCAGAGAGCAATATCACAAGAACGAGAAGCACCTCCGATTCCTGCCCGAAACCTAGTGTTTCCTAGAAGCACGAGTATGGTCGCAGAGTCTACCAGAGAGCCAACTCCAGTGGTGCTCCCGAAAAGAAGTGTAGCGGTGGCGCCATATCCAACCGTCCCYGAATTGGCAGAACTTCCTTCATACACAGCTGCACTTAAGCATCCTCAAGTCTATCCAGCTGTAGACGGTGGACAGTTACACCATTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25478</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>357824</contig_pos>
        <strand>+</strand>
        <context>AACCGTCCCY[C/T]AATTGGCAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGTGCTCCCGAAAAGAAGTGTAGCGGTGGCGCCATATCCAACCGTCCCT</left_flank>
        <right_flank>AATTGGCAGAACTTCCTTCATACACAGCTGCACTTAAGCATCCTCAAGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGATACAAAATGGCGGAGTTGGTCCGTCCCAAAAAACCGAAACATCGGGAGCGACCCCAAAGTGATGATGCACCGAGGATTCCGGATCGTCCGGTGATGGTAAATGGGATGCGGTTGCCAGTGGCTCCTTCGCATTCTATCCAGCATCAACGGGATCGATCAGCATCTCCAGAACCAGAAGAACAGGTACTCAGTGATACCGGCGAATCGATAAATCCCGAGAAAGAAAACGGTAGTATTCAAGATGTGAGGAGCAGTCCCGTTCGTCCAGCGCCACCTCCTCCAGTGAGTTTTTAAATTCATTTAAATAAAACAAATTATTTGACGAAATCATGATTCAGAGAGCAATATCACAAGAACGAGAAGCACCTCCGATTCCTGCCCGAAACCTAGTGTTTCCTAGAAGCACGAGTATGGTCGCAGAGTCTACCAGAGAGCCAACTCCAGTGGTGCTCCCGAAAAGAAGTGTAGCGGTGGCGCCATATCCAACCGTCCCTGAATTGGCAGAACTTCCTTCATACACAGCTGCACTTAAGCATCCTCAAGTCTATCCAGCTGTAGACGGTGGACAGTTACACCATTCTCGTTCTGCTGCTGCCATCCCGGTGAGTTTTTGAAGGGGTACTTCGACCAAAATGTATGAAAATATGTAAATTCAAATATAAAAATTAAAGAAAAAATTCGAAAAAAAAACTGCAAAATCTCGAAAAAAATTGCTTTCTGAAAACTTCTGGAAGGTTCTCGTACCTTTTTTTGAATTTCCTGCCAAACCGAAAACTTTGAAAAATTAGCGGCTTTTTGAAATTTTTCGAGAGAGAAAATGTATTTTTCTTCAATTTTCTGCAAAATTGTTAGACCTTTTTAGGTTTTTCAGCTATTTTTGACCATTCTTTTTTGATCTTTCCGGATTTTTGTCTGAAATTTGACGGAACAGTTTTCATAAAGAATACTGTAGGTTACTGTAGTTTTTTTTGCATACACAATCACGTCAAAATGCA</canonical>
            <polymorphic>TTAGATACAAAATGGCGGAGTTGGTCCGTCCCAAAAAACCGAAACATCGGGAGCGACCCCAAAGTGATGATGCACCGAGGATTCCGGATCGTCCGGTGATGGTAAATGGGATGCGGTTGCCAGTGGCTCCTTCGCATTCTATCCAGCATCAACGGGATCGATCAGCATCTCCAGAACCAGAAGAACAGGTACTCAGTGATACCGGCGAATCGATAAATCCCGAGAAAGAAAACGGTAGTATTCAAGATGTGAGGAGCAGTCCCGTTCGTCCAGCGCCACCTCCTCCAGTGAGTTTTTAAATTCATTTAAATAAAACAAATTATTTGACGAAATCATGATTCAGAGAGCAATATCACAAGAACGAGAAGCACCTCCGATTCCTGCCCGAAACCTAGTGTTTCCTAGAAGCACGAGTATGGTCGCAGAGTCTACCAGAGAGCCAACTCCAGTGGTGCTCCCGAAAAGAAGTGTAGCGGTGGCGCCATATCCAACCGTCCCTYAATTGGCAGAACTTCCTTCATACACAGCTGCACTTAAGCATCCTCAAGTCTATCCAGCTGTAGACGGTGGACAGTTACACCATTCTCGTTCTGCTGCTGCCATCCCGGTGAGTTTTTGAAGGGGTACTTCGACCAAAATGTATGAAAATATGTAAATTCAAATATAAAAATTAAAGAAAAAATTCGAAAAAAAAACTGCAAAATCTCGAAAAAAATTGCTTTCTGAAAACTTCTGGAAGGTTCTCGTACCTTTTTTTGAATTTCCTGCCAAACCGAAAACTTTGAAAAATTAGCGGCTTTTTGAAATTTTTCGAGAGAGAAAATGTATTTTTCTTCAATTTTCTGCAAAATTGTTAGACCTTTTTAGGTTTTTCAGCTATTTTTGACCATTCTTTTTTGATCTTTCCGGATTTTTGTCTGAAATTTGACGGAACAGTTTTCATAAAGAATACTGTAGGTTACTGTAGTTTTTTTTGCATACACAATCACGTCAAAATGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCAGAGAGCAATATCACAAGA</pcr_primer_p1>
		<pcr_primer_p2>GAGAATGGTGTAACTGTCCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCAGAGAGCAATATCACAAGAACGAGAAGCACCTCCGATTCCTGCCCGAAACCTAGTGTTTCCTAGAAGCACGAGTATGGTCGCAGAGTCTACCAGAGAGCCAACTCCAGTGGTGCTCCCGAAAAGAAGTGTAGCGGTGGCGCCATATCCAACCGTCCCTGAATTGGCAGAACTTCCTTCATACACAGCTGCACTTAAGCATCCTCAAGTCTATCCAGCTGTAGACGGTGGACAGTTACACCATTCTC</canonical_amplicon>
		<polymorphic_amplicon>ATTCAGAGAGCAATATCACAAGAACGAGAAGCACCTCCGATTCCTGCCCGAAACCTAGTGTTTCCTAGAAGCACGAGTATGGTCGCAGAGTCTACCAGAGAGCCAACTCCAGTGGTGCTCCCGAAAAGAAGTGTAGCGGTGGCGCCATATCCAACCGTCCCTYAATTGGCAGAACTTCCTTCATACACAGCTGCACTTAAGCATCCTCAAGTCTATCCAGCTGTAGACGGTGGACAGTTACACCATTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25479</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>358274</contig_pos>
        <strand></strand>
        <context>tcataaagaa[T/A]actgtaggtt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATCTTTCCGGATTTTTGTCTGAAATTTGACGGAACAGTTTTCATAAAGAA</left_flank>
        <right_flank>ACTGTAGGTTACTGTAGTTTTTTTTGCATACACAATCACGTCAAAATGCA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGCTCCCGAAAAGAAGTGTAGCGGTGGCGCCATATCCAACCGTCCCTGAATTGGCAGAACTTCCTTCATACACAGCTGCACTTAAGCATCCTCAAGTCTATCCAGCTGTAGACGGTGGACAGTTACACCATTCTCGTTCTGCTGCTGCCATCCCGGTGAGTTTTTGAAGGGGTACTTCGACCAAAATGTATGAAAATATGTAAATTCAAATATAAAAATTAAAGAAAAAATTCGAAAAAAAAACTGCAAAATCTCGAAAAAAATTGCTTTCTGAAAACTTCTGGAAGGTTCTCGTACCTTTTTTTGAATTTCCTGCCAAACCGAAAACTTTGAAAAATTAGCGGCTTTTTGAAATTTTTCGAGAGAGAAAATGTATTTTTCTTCAATTTTCTGCAAAATTGTTAGACCTTTTTAGGTTTTTCAGCTATTTTTGACCATTCTTTTTTGATCTTTCCGGATTTTTGTCTGAAATTTGACGGAACAGTTTTCATAAAGAATACTGTAGGTTACTGTAGTTTTTTTTGCATACACAATCACGTCAAAATGCAGACAAAAAAATCTGTAAAATAAATCGAAGGCTTTCTACAGTGATCTAAAGTAATCCTCACGAGAACCGTTCCGTCGAATTTAAAACAAGAAAACCGGAAAAATCCAAAAAGAATCTTGAAAATAGCTGAAACCCCTAAAAAGGTCTAAAAATTTTGCAAAAAAAAAAACGCTAATTTTTCTGAGTTTTCAGTTTTGGCGGAAAACAATTTGAGCTTCTCGAATTTTTTTTTGAATTTCCGCCAATACTGTTCTAGGCCACCTCTAGGATCGGAAATAGCAAGCGGAGGTTTCGGCAGGAATTCAAAATGATTCCAGAAGTTTCCAGAAATAAATTTTCAAAGCGATTTTTTGAGACTTTGCAGATTTTTTTCGGTTTTTCCTGTGTTGCGATATGAATCTACATATTTTTCCACACATTTTGATGTATTAAAAAAAATAATTTTTGATCC</canonical>
            <polymorphic>GGTGCTCCCGAAAAGAAGTGTAGCGGTGGCGCCATATCCAACCGTCCCTGAATTGGCAGAACTTCCTTCATACACAGCTGCACTTAAGCATCCTCAAGTCTATCCAGCTGTAGACGGTGGACAGTTACACCATTCTCGTTCTGCTGCTGCCATCCCGGTGAGTTTTTGAAGGGGTACTTCGACCAAAATGTATGAAAATATGTAAATTCAAATATAAAAATTAAAGAAAAAATTCGAAAAAAAAACTGCAAAATCTCGAAAAAAATTGCTTTCTGAAAACTTCTGGAAGGTTCTCGTACCTTTTTTTGAATTTCCTGCCAAACCGAAAACTTTGAAAAATTAGCGGCTTTTTGAAATTTTTCGAGAGAGAAAATGTATTTTTCTTCAATTTTCTGCAAAATTGTTAGACCTTTTTAGGTTTTTCAGCTATTTTTGACCATTCTTTTTTGATCTTTCCGGATTTTTGTCTGAAATTTGACGGAACAGTTTTCATAAAGAAWACTGTAGGTTACTGTAGTTTTTTTTGCATACACAATCACGTCAAAATGCAGACAAAAAAATCTGTAAAATAAATCGAAGGCTTTCTACAGTGATCTAAAGTAATCCTCACGAGAACCGTTCCGTCGAATTTAAAACAAGAAAACCGGAAAAATCCAAAAAGAATCTTGAAAATAGCTGAAACCCCTAAAAAGGTCTAAAAATTTTGCAAAAAAAAAAACGCTAATTTTTCTGAGTTTTCAGTTTTGGCGGAAAACAATTTGAGCTTCTCGAATTTTTTTTTGAATTTCCGCCAATACTGTTCTAGGCCACCTCTAGGATCGGAAATAGCAAGCGGAGGTTTCGGCAGGAATTCAAAATGATTCCAGAAGTTTCCAGAAATAAATTTTCAAAGCGATTTTTTGAGACTTTGCAGATTTTTTTCGGTTTTTCCTGTGTTGCGATATGAATCTACATATTTTTCCACACATTTTGATGTATTAAAAAAAATAATTTTTGATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGACCAAAATGTATGAAAATATG</pcr_primer_p1>
		<pcr_primer_p2>ATCCTAGAGGTGGCCTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>640</pcr_amplicon_size>
		<canonical_amplicon>CGACCAAAATGTATGAAAATATGTAAATTCAAATATAAAAATTAAAGAAAAAATTCGAAAAAAAAACTGCAAAATCTCGAAAAAAATTGCTTTCTGAAAACTTCTGGAAGGTTCTCGTACCTTTTTTTGAATTTCCTGCCAAACCGAAAACTTTGAAAAATTAGCGGCTTTTTGAAATTTTTCGAGAGAGAAAATGTATTTTTCTTCAATTTTCTGCAAAATTGTTAGACCTTTTTAGGTTTTTCAGCTATTTTTGACCATTCTTTTTTGATCTTTCCGGATTTTTGTCTGAAATTTGACGGAACAGTTTTCATAAAGAATACTGTAGGTTACTGTAGTTTTTTTTGCATACACAATCACGTCAAAATGCAGACAAAAAAATCTGTAAAATAAATCGAAGGCTTTCTACAGTGATCTAAAGTAATCCTCACGAGAACCGTTCCGTCGAATTTAAAACAAGAAAACCGGAAAAATCCAAAAAGAATCTTGAAAATAGCTGAAACCCCTAAAAAGGTCTAAAAATTTTGCAAAAAAAAAAACGCTAATTTTTCTGAGTTTTCAGTTTTGGCGGAAAACAATTTGAGCTTCTCGAATTTTTTTTTGAATTTCCGCCAATACTGTTCTAGGCCACCTCTAGGAT</canonical_amplicon>
		<polymorphic_amplicon>CGACCAAAATGTATGAAAATATGTAAATTCAAATATAAAAATTAAAGAAAAAATTCGAAAAAAAAACTGCAAAATCTCGAAAAAAATTGCTTTCTGAAAACTTCTGGAAGGTTCTCGTACCTTTTTTTGAATTTCCTGCCAAACCGAAAACTTTGAAAAATTAGCGGCTTTTTGAAATTTTTCGAGAGAGAAAATGTATTTTTCTTCAATTTTCTGCAAAATTGTTAGACCTTTTTAGGTTTTTCAGCTATTTTTGACCATTCTTTTTTGATCTTTCCGGATTTTTGTCTGAAATTTGACGGAACAGTTTTCATAAAGAAWACTGTAGGTTACTGTAGTTTTTTTTGCATACACAATCACGTCAAAATGCAGACAAAAAAATCTGTAAAATAAATCGAAGGCTTTCTACAGTGATCTAAAGTAATCCTCACGAGAACCGTTCCGTCGAATTTAAAACAAGAAAACCGGAAAAATCCAAAAAGAATCTTGAAAATAGCTGAAACCCCTAAAAAGGTCTAAAAATTTTGCAAAAAAAAAAACGCTAATTTTTCTGAGTTTTCAGTTTTGGCGGAAAACAATTTGAGCTTCTCGAATTTTTTTTTGAATTTCCGCCAATACTGTTCTAGGCCACCTCTAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25480</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>363987</contig_pos>
        <strand></strand>
        <context>AAATTTTGAA[T/A]TTTCAAAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCTCTAATCATCTACAGTAATCCAATTCTACTGTAGTTTGAAATTTTGAA</left_flank>
        <right_flank>TTTCAAAACTACATTAATCCACAGAATTCCAGTTTTTACAGCTACCGTAA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTGGATTACTGTATCTTATCTATGAATAAAGTTACAGATCATAAAGTGGCTTTTCTCGCAAGGCCCGGCAGGCCCGGGGCGGGCCTGCTTTTTTTTGCTCCTATTGCTCTGTAACTCTGTTCATAGACAAGATACAGTATTCCAAATAATACCGTTTTGTAGTACTCGTGGAGCTCTATCATACCTGATTGAGTTGGTTCGAAAACATTGATTCTGAAAGAAGTTATGGCAGGGCCCAAAAAGGCCCGGATTACAAGTATGCACAATTCGAATTCTACAGTAATCAAGACCTACAGTACCTCGAAAATGTTGAAACTTTCAAAAACTACAGTAATCCTATATTTTTCGATTTCTCTCTGAAACTACAGTAATCTACCTTTGAACTTCTAAAACCTACCGTATCCTATGCTACAGTAACCTGCAGTAATCCTCAAAATTTGACCTTCTCTCTAATCATCTACAGTAATCCAATTCTACTGTAGTTTGAAATTTTGAATTTTCAAAACTACATTAATCCACAGAATTCCAGTTTTTACAGCTACCGTAACCCTAGATCACAGAATCCTAATCGCGAATAATCTACAGTAATCCAAAAAGATTTTCAAGTCAAAGTCATCCAGTTTAGGGCTGAGCAATGACTCACATTCTCTGAAAAAGCTTAGGATTACGGTAGTTTTTGAAAGTTTTAAAATTTCGGTGGTTTTGTAGGTCTCGATTACTGTAGAATTAGAGAAAAGTTTGAAATTTGAAATTTTGGATTTTTCAAAAAAATCTGTGAATGCAACGTTTTCAATCTAAATCTGTTTAACACCTGGAAAATTTTGAGCCGAGCTCCAGACTCCTGAAAATGGTCGAAATGGCCGAAAACAAACTGAAAAATCTGTTCTTGCTGACCGGTCCTGTACATATTACTCAATTTCCAATATTTCCAGCTTTATGGCAACATTCGAACGACTCCTACACATCGATCAGCTCCCTTACGCAGTTCAATGGCTCA</canonical>
            <polymorphic>TATTTGGATTACTGTATCTTATCTATGAATAAAGTTACAGATCATAAAGTGGCTTTTCTCGCAAGGCCCGGCAGGCCCGGGGCGGGCCTGCTTTTTTTTGCTCCTATTGCTCTGTAACTCTGTTCATAGACAAGATACAGTATTCCAAATAATACCGTTTTGTAGTACTCGTGGAGCTCTATCATACCTGATTGAGTTGGTTCGAAAACATTGATTCTGAAAGAAGTTATGGCAGGGCCCAAAAAGGCCCGGATTACAAGTATGCACAATTCGAATTCTACAGTAATCAAGACCTACAGTACCTCGAAAATGTTGAAACTTTCAAAAACTACAGTAATCCTATATTTTTCGATTTCTCTCTGAAACTACAGTAATCTACCTTTGAACTTCTAAAACCTACCGTATCCTATGCTACAGTAACCTGCAGTAATCCTCAAAATTTGACCTTCTCTCTAATCATCTACAGTAATCCAATTCTACTGTAGTTTGAAATTTTGAAWTTTCAAAACTACATTAATCCACAGAATTCCAGTTTTTACAGCTACCGTAACCCTAGATCACAGAATCCTAATCGCGAATAATCTACAGTAATCCAAAAAGATTTTCAAGTCAAAGTCATCCAGTTTAGGGCTGAGCAATGACTCACATTCTCTGAAAAAGCTTAGGATTACGGTAGTTTTTGAAAGTTTTAAAATTTCGGTGGTTTTGTAGGTCTCGATTACTGTAGAATTAGAGAAAAGTTTGAAATTTGAAATTTTGGATTTTTCAAAAAAATCTGTGAATGCAACGTTTTCAATCTAAATCTGTTTAACACCTGGAAAATTTTGAGCCGAGCTCCAGACTCCTGAAAATGGTCGAAATGGCCGAAAACAAACTGAAAAATCTGTTCTTGCTGACCGGTCCTGTACATATTACTCAATTTCCAATATTTCCAGCTTTATGGCAACATTCGAACGACTCCTACACATCGATCAGCTCCCTTACGCAGTTCAATGGCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>273 180 168 164 68 53 53 27 7 7</canonical_bands>
                <polymorphic_bands>273 180 168 164 68 53 53 34 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>267 168 164 97 83 68 35 35 27 18 18 7 7 6</canonical_bands>
                <polymorphic_bands>267 168 164 97 83 68 35 35 34 18 18 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACAGTAACCTGCAGTAATCCTC</pcr_primer_p1>
		<pcr_primer_p2>CTTTTTCAGAGAATGTGAGTCAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TACAGTAACCTGCAGTAATCCTCAAAATTTGACCTTCTCTCTAATCATCTACAGTAATCCAATTCTACTGTAGTTTGAAATTTTGAATTTTCAAAACTACATTAATCCACAGAATTCCAGTTTTTACAGCTACCGTAACCCTAGATCACAGAATCCTAATCGCGAATAATCTACAGTAATCCAAAAAGATTTTCAAGTCAAAGTCATCCAGTTTAGGGCTGAGCAATGACTCACATTCTCTGAAAAAG</canonical_amplicon>
		<polymorphic_amplicon>TACAGTAACCTGCAGTAATCCTCAAAATTTGACCTTCTCTCTAATCATCTACAGTAATCCAATTCTACTGTAGTTTGAAATTTTGAAWTTTCAAAACTACATTAATCCACAGAATTCCAGTTTTTACAGCTACCGTAACCCTAGATCACAGAATCCTAATCGCGAATAATCTACAGTAATCCAAAAAGATTTTCAAGTCAAAGTCATCCAGTTTAGGGCTGAGCAATGACTCACATTCTCTGAAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25481</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>364062</contig_pos>
        <strand></strand>
        <context>ATCCTAATCG[C/T]GAATAATCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTCCAGTTTTTACAGCTACCGTAACCCTAGATCACAGAATCCTAATCG</left_flank>
        <right_flank>GAATAATCTACAGTAATCCAAAAAGATTTTCAAGTCAAAGTCATCCAGTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCGGGGCGGGCCTGCTTTTTTTTGCTCCTATTGCTCTGTAACTCTGTTCATAGACAAGATACAGTATTCCAAATAATACCGTTTTGTAGTACTCGTGGAGCTCTATCATACCTGATTGAGTTGGTTCGAAAACATTGATTCTGAAAGAAGTTATGGCAGGGCCCAAAAAGGCCCGGATTACAAGTATGCACAATTCGAATTCTACAGTAATCAAGACCTACAGTACCTCGAAAATGTTGAAACTTTCAAAAACTACAGTAATCCTATATTTTTCGATTTCTCTCTGAAACTACAGTAATCTACCTTTGAACTTCTAAAACCTACCGTATCCTATGCTACAGTAACCTGCAGTAATCCTCAAAATTTGACCTTCTCTCTAATCATCTACAGTAATCCAATTCTACTGTAGTTTGAAATTTTGAATTTTCAAAACTACATTAATCCACAGAATTCCAGTTTTTACAGCTACCGTAACCCTAGATCACAGAATCCTAATCGCGAATAATCTACAGTAATCCAAAAAGATTTTCAAGTCAAAGTCATCCAGTTTAGGGCTGAGCAATGACTCACATTCTCTGAAAAAGCTTAGGATTACGGTAGTTTTTGAAAGTTTTAAAATTTCGGTGGTTTTGTAGGTCTCGATTACTGTAGAATTAGAGAAAAGTTTGAAATTTGAAATTTTGGATTTTTCAAAAAAATCTGTGAATGCAACGTTTTCAATCTAAATCTGTTTAACACCTGGAAAATTTTGAGCCGAGCTCCAGACTCCTGAAAATGGTCGAAATGGCCGAAAACAAACTGAAAAATCTGTTCTTGCTGACCGGTCCTGTACATATTACTCAATTTCCAATATTTCCAGCTTTATGGCAACATTCGAACGACTCCTACACATCGATCAGCTCCCTTACGCAGTTCAATGGCTCAGTGGACCATCGTCCACGCCGACTCCAATAGTCAGACTCATTTGCTCAGCAATATCGTACTACTCTGCAAAACTGC</canonical>
            <polymorphic>CCCGGGGCGGGCCTGCTTTTTTTTGCTCCTATTGCTCTGTAACTCTGTTCATAGACAAGATACAGTATTCCAAATAATACCGTTTTGTAGTACTCGTGGAGCTCTATCATACCTGATTGAGTTGGTTCGAAAACATTGATTCTGAAAGAAGTTATGGCAGGGCCCAAAAAGGCCCGGATTACAAGTATGCACAATTCGAATTCTACAGTAATCAAGACCTACAGTACCTCGAAAATGTTGAAACTTTCAAAAACTACAGTAATCCTATATTTTTCGATTTCTCTCTGAAACTACAGTAATCTACCTTTGAACTTCTAAAACCTACCGTATCCTATGCTACAGTAACCTGCAGTAATCCTCAAAATTTGACCTTCTCTCTAATCATCTACAGTAATCCAATTCTACTGTAGTTTGAAATTTTGAATTTTCAAAACTACATTAATCCACAGAATTCCAGTTTTTACAGCTACCGTAACCCTAGATCACAGAATCCTAATCGYGAATAATCTACAGTAATCCAAAAAGATTTTCAAGTCAAAGTCATCCAGTTTAGGGCTGAGCAATGACTCACATTCTCTGAAAAAGCTTAGGATTACGGTAGTTTTTGAAAGTTTTAAAATTTCGGTGGTTTTGTAGGTCTCGATTACTGTAGAATTAGAGAAAAGTTTGAAATTTGAAATTTTGGATTTTTCAAAAAAATCTGTGAATGCAACGTTTTCAATCTAAATCTGTTTAACACCTGGAAAATTTTGAGCCGAGCTCCAGACTCCTGAAAATGGTCGAAATGGCCGAAAACAAACTGAAAAATCTGTTCTTGCTGACCGGTCCTGTACATATTACTCAATTTCCAATATTTCCAGCTTTATGGCAACATTCGAACGACTCCTACACATCGATCAGCTCCCTTACGCAGTTCAATGGCTCAGTGGACCATCGTCCACGCCGACTCCAATAGTCAGACTCATTTGCTCAGCAATATCGTACTACTCTGCAAAACTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGCGA</site>
                <isoschizomers>
                    <enzyme>Bsp68I</enzyme>
                    <enzyme>NruI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACAGTAACCTGCAGTAATCCTC</pcr_primer_p1>
		<pcr_primer_p2>CTTTTTCAGAGAATGTGAGTCAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TACAGTAACCTGCAGTAATCCTCAAAATTTGACCTTCTCTCTAATCATCTACAGTAATCCAATTCTACTGTAGTTTGAAATTTTGAATTTTCAAAACTACATTAATCCACAGAATTCCAGTTTTTACAGCTACCGTAACCCTAGATCACAGAATCCTAATCGCGAATAATCTACAGTAATCCAAAAAGATTTTCAAGTCAAAGTCATCCAGTTTAGGGCTGAGCAATGACTCACATTCTCTGAAAAAG</canonical_amplicon>
		<polymorphic_amplicon>TACAGTAACCTGCAGTAATCCTCAAAATTTGACCTTCTCTCTAATCATCTACAGTAATCCAATTCTACTGTAGTTTGAAATTTTGAATTTTCAAAACTACATTAATCCACAGAATTCCAGTTTTTACAGCTACCGTAACCCTAGATCACAGAATCCTAATCGYGAATAATCTACAGTAATCCAAAAAGATTTTCAAGTCAAAGTCATCCAGTTTAGGGCTGAGCAATGACTCACATTCTCTGAAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25482</snp_id>
        <super_contig>c001300868.Contig1</super_contig>
        <contig_pos>367949</contig_pos>
        <strand></strand>
        <context>gacaaaaaac[T/C]ggaaaaaatc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCTACAGTAATCTTCACGAACACCGTTCCGTCAAATTTCAGACAAAAAAC</left_flank>
        <right_flank>GGAAAAAATCGAAAAAGAATAGTCGAGAATAGCTGGAAAACCTAAAAAGG</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTCTCTTCAACCAGCACTTTTTCTTTACCTGAAACATTAAATAAAAGGGGACTTGGACCAAATTTTCAACGAAAAAAATACATCAAAATGTGCAGAAAAATATATAGATTCATTTAAAAAGAAAGAAAAAATTCGAAAATTCGTTGTATATCTGGAAACTTCTAGAAACTGAAAACACTGAAAATTTAGCGGTTTGTCGTGATTTTTTGAGTTCGATTTTTGCAAAATTTTTAGACTTGTTTAGGTTTTTCAGCTATTTTTCATGATTTTTTTTTCGATTTTTCCGATTTTTTGTCTGAAATTTGATGGTACGGTGTTCGTAAAGATCTGTAGAAAACGAATTTCCTTTTGTAGTTTATTTTTGAAAACAATTAATCTGCATTCTGACGTGATTGTGTTTGCACCACAAAAATAAACTAAAAAAAGGAAATCAGCCTTCTACAGTAACCTACAGTAATCTTCACGAACACCGTTCCGTCAAATTTCAGACAAAAAACTGGAAAAAATCGAAAAAGAATAGTCGAGAATAGCTGGAAAACCTAAAAAGGTCTTAAAATTTCCTCAGAACGAATTTTAAAAAATGCATGTTTTTCTTTAAAAAATACAAAAAACCGCTAATTTTTCAGTGTTCTCAGTTTTAGCGGGAATTCAAAAAACCTCTTGATGGTTTTTTTTGAGATTTTGCAAAAAAAACTTTCGATTCTTCTGCACATTTTTATAAATTAAACATTTCTGACTCACCTAAAATCCTCTCATACTCGGATTGATTCCACCCGTGGTCAATAGTATCCTCTACGATTTTGCAAAGAAGTGGTGAGATTCTAGCGCCGAACACGTAGCTCATATCCGATGGATTCGACATATCCATCGGCTCATTCCCTTTGACGATCCGGAATTTTCGTGCCAGAGTGTCCCAAATTTTCGCTCGCTCCGAAATCGTTCGATCTTGCGTCGTGTGACGACGAGCATAGATTACACGAGAACATCGTAAGTTTTGG</canonical>
            <polymorphic>TGTTCTCTTCAACCAGCACTTTTTCTTTACCTGAAACATTAAATAAAAGGGGACTTGGACCAAATTTTCAACGAAAAAAATACATCAAAATGTGCAGAAAAATATATAGATTCATTTAAAAAGAAAGAAAAAATTCGAAAATTCGTTGTATATCTGGAAACTTCTAGAAACTGAAAACACTGAAAATTTAGCGGTTTGTCGTGATTTTTTGAGTTCGATTTTTGCAAAATTTTTAGACTTGTTTAGGTTTTTCAGCTATTTTTCATGATTTTTTTTTCGATTTTTCCGATTTTTTGTCTGAAATTTGATGGTACGGTGTTCGTAAAGATCTGTAGAAAACGAATTTCCTTTTGTAGTTTATTTTTGAAAACAATTAATCTGCATTCTGACGTGATTGTGTTTGCACCACAAAAATAAACTAAAAAAAGGAAATCAGCCTTCTACAGTAACCTACAGTAATCTTCACGAACACCGTTCCGTCAAATTTCAGACAAAAAACYGGAAAAAATCGAAAAAGAATAGTCGAGAATAGCTGGAAAACCTAAAAAGGTCTTAAAATTTCCTCAGAACGAATTTTAAAAAATGCATGTTTTTCTTTAAAAAATACAAAAAACCGCTAATTTTTCAGTGTTCTCAGTTTTAGCGGGAATTCAAAAAACCTCTTGATGGTTTTTTTTGAGATTTTGCAAAAAAAACTTTCGATTCTTCTGCACATTTTTATAAATTAAACATTTCTGACTCACCTAAAATCCTCTCATACTCGGATTGATTCCACCCGTGGTCAATAGTATCCTCTACGATTTTGCAAAGAAGTGGTGAGATTCTAGCGCCGAACACGTAGCTCATATCCGATGGATTCGACATATCCATCGGCTCATTCCCTTTGACGATCCGGAATTTTCGTGCCAGAGTGTCCCAAATTTTCGCTCGCTCCGAAATCGTTCGATCTTGCGTCGTGTGACGACGAGCATAGATTACACGAGAACATCGTAAGTTTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTTGGACCAAATTTTCAAC</pcr_primer_p1>
		<pcr_primer_p2>GCAGAAGAATCGAAAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>660</pcr_amplicon_size>
		<canonical_amplicon>GACTTGGACCAAATTTTCAACGAAAAAAATACATCAAAATGTGCAGAAAAATATATAGATTCATTTAAAAAGAAAGAAAAAATTCGAAAATTCGTTGTATATCTGGAAACTTCTAGAAACTGAAAACACTGAAAATTTAGCGGTTTGTCGTGATTTTTTGAGTTCGATTTTTGCAAAATTTTTAGACTTGTTTAGGTTTTTCAGCTATTTTTCATGATTTTTTTTTCGATTTTTCCGATTTTTTGTCTGAAATTTGATGGTACGGTGTTCGTAAAGATCTGTAGAAAACGAATTTCCTTTTGTAGTTTATTTTTGAAAACAATTAATCTGCATTCTGACGTGATTGTGTTTGCACCACAAAAATAAACTAAAAAAAGGAAATCAGCCTTCTACAGTAACCTACAGTAATCTTCACGAACACCGTTCCGTCAAATTTCAGACAAAAAACTGGAAAAAATCGAAAAAGAATAGTCGAGAATAGCTGGAAAACCTAAAAAGGTCTTAAAATTTCCTCAGAACGAATTTTAAAAAATGCATGTTTTTCTTTAAAAAATACAAAAAACCGCTAATTTTTCAGTGTTCTCAGTTTTAGCGGGAATTCAAAAAACCTCTTGATGGTTTTTTTTGAGATTTTGCAAAAAAAACTTTCGATTCTTCTGC</canonical_amplicon>
		<polymorphic_amplicon>GACTTGGACCAAATTTTCAACGAAAAAAATACATCAAAATGTGCAGAAAAATATATAGATTCATTTAAAAAGAAAGAAAAAATTCGAAAATTCGTTGTATATCTGGAAACTTCTAGAAACTGAAAACACTGAAAATTTAGCGGTTTGTCGTGATTTTTTGAGTTCGATTTTTGCAAAATTTTTAGACTTGTTTAGGTTTTTCAGCTATTTTTCATGATTTTTTTTTCGATTTTTCCGATTTTTTGTCTGAAATTTGATGGTACGGTGTTCGTAAAGATCTGTAGAAAACGAATTTCCTTTTGTAGTTTATTTTTGAAAACAATTAATCTGCATTCTGACGTGATTGTGTTTGCACCACAAAAATAAACTAAAAAAAGGAAATCAGCCTTCTACAGTAACCTACAGTAATCTTCACGAACACCGTTCCGTCAAATTTCAGACAAAAAACYGGAAAAAATCGAAAAAGAATAGTCGAGAATAGCTGGAAAACCTAAAAAGGTCTTAAAATTTCCTCAGAACGAATTTTAAAAAATGCATGTTTTTCTTTAAAAAATACAAAAAACCGCTAATTTTTCAGTGTTCTCAGTTTTAGCGGGAATTCAAAAAACCTCTTGATGGTTTTTTTTGAGATTTTGCAAAAAAAACTTTCGATTCTTCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25483</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>46028</contig_pos>
        <strand>+</strand>
        <context>AATTCCCATT[A/T]TTTTTGACCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAACAAAAAATTTAGGATATTTTAAGCCTAAAATCAGTGAATTCCCATT</left_flank>
        <right_flank>TTTTTGACCTAGTTATGATTTTTGGAAATTTTGAATTTTTTGAAAAAATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTAGTTAAGGATCCAGGATTTCCGGTTTAAAATGGCTCATTCTTGCTGGATTTTTCTAGAATTTTCTGGAAATTTTTTTATATGCTTTTTAAGCTGAGCAATCCCTTCAAAACTCTCTGACAATTCTAAAAGCGAGAGATCAACGAGAGTGAGAGACGCAGACAGATTACACGCAATGACCTGTACAACTATCTCTCTCCATCCCGTTTCTCCTTGTTTTTCTCTGCGTCTCTCACTTTTCTGTACTCTCTCGTCCCTCTTGAAAGTCTTTTTGACAATTATCTCATCCCGTATCTCAAGGTAGAATCAGTCCATGGGAGGTCAAAAGATATTAGTTATTCGAGATTTTATCTTTTTTCCCTCTTTTTTTTTGGATTTCCTGTACTTTTTTCGGATTTTTATAAATTTCTAGAACTTTGAGAATTTTGGAGGCATTATTGTCTTGAAAAACAAAAAATTTAGGATATTTTAAGCCTAAAATCAGTGAATTCCCATTTTTTTTGACCTAGTTATGATTTTTGGAAATTTTGAATTTTTTGAAAAAATCTAATTTTTTGCTATAAAACTTCAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAAATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAA</canonical>
            <polymorphic>CTTTTAGTTAAGGATCCAGGATTTCCGGTTTAAAATGGCTCATTCTTGCTGGATTTTTCTAGAATTTTCTGGAAATTTTTTTATATGCTTTTTAAGCTGAGCAATCCCTTCAAAACTCTCTGACAATTCTAAAAGCGAGAGATCAACGAGAGTGAGAGACGCAGACAGATTACACGCAATGACCTGTACAACTATCTCTCTCCATCCCGTTTCTCCTTGTTTTTCTCTGCGTCTCTCACTTTTCTGTACTCTCTCGTCCCTCTTGAAAGTCTTTTTGACAATTATCTCATCCCGTATCTCAAGGTAGAATCAGTCCATGGGAGGTCAAAAGATATTAGTTATTCGAGATTTTATCTTTTTTCCCTCTTTTTTTTTGGATTTCCTGTACTTTTTTCGGATTTTTATAAATTTCTAGAACTTTGAGAATTTTGGAGGCATTATTGTCTTGAAAAACAAAAAATTTAGGATATTTTAAGCCTAAAATCAGTGAATTCCCATTWTTTTTGACCTAGTTATGATTTTTGGAAATTTTGAATTTTTTGAAAAAATCTAATTTTTTGCTATAAAACTTCAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAAATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAATTTTGGAGGCATTATT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAGCTCAAATTCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>GAGAATTTTGGAGGCATTATTGTCTTGAAAAACAAAAAATTTAGGATATTTTAAGCCTAAAATCAGTGAATTCCCATTTTTTTTGACCTAGTTATGATTTTTGGAAATTTTGAATTTTTTGAAAAAATCTAATTTTTTGCTATAAAACTTCAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GAGAATTTTGGAGGCATTATTGTCTTGAAAAACAAAAAATTTAGGATATTTTAAGCCTAAAATCAGTGAATTCCCATTWTTTTTGACCTAGTTATGATTTTTGGAAATTTTGAATTTTTTGAAAAAATCTAATTTTTTGCTATAAAACTTCAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25484</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>46097</contig_pos>
        <strand></strand>
        <context>TGCTATAaaa[C/A]ttcaaactac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTTTGGAAATTTTGAATTTTTTGAAAAAATCTAATTTTTTGCTATAAAA</left_flank>
        <right_flank>TTCAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAAATTTTTTTATATGCTTTTTAAGCTGAGCAATCCCTTCAAAACTCTCTGACAATTCTAAAAGCGAGAGATCAACGAGAGTGAGAGACGCAGACAGATTACACGCAATGACCTGTACAACTATCTCTCTCCATCCCGTTTCTCCTTGTTTTTCTCTGCGTCTCTCACTTTTCTGTACTCTCTCGTCCCTCTTGAAAGTCTTTTTGACAATTATCTCATCCCGTATCTCAAGGTAGAATCAGTCCATGGGAGGTCAAAAGATATTAGTTATTCGAGATTTTATCTTTTTTCCCTCTTTTTTTTTGGATTTCCTGTACTTTTTTCGGATTTTTATAAATTTCTAGAACTTTGAGAATTTTGGAGGCATTATTGTCTTGAAAAACAAAAAATTTAGGATATTTTAAGCCTAAAATCAGTGAATTCCCATTTTTTTTGACCTAGTTATGATTTTTGGAAATTTTGAATTTTTTGAAAAAATCTAATTTTTTGCTATAAAACTTCAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAAATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACTCTAGAACATGTCCAAAATCAGTTTTGGGGATACTTTCAAAAGTTTTAAA</canonical>
            <polymorphic>TGGAAATTTTTTTATATGCTTTTTAAGCTGAGCAATCCCTTCAAAACTCTCTGACAATTCTAAAAGCGAGAGATCAACGAGAGTGAGAGACGCAGACAGATTACACGCAATGACCTGTACAACTATCTCTCTCCATCCCGTTTCTCCTTGTTTTTCTCTGCGTCTCTCACTTTTCTGTACTCTCTCGTCCCTCTTGAAAGTCTTTTTGACAATTATCTCATCCCGTATCTCAAGGTAGAATCAGTCCATGGGAGGTCAAAAGATATTAGTTATTCGAGATTTTATCTTTTTTCCCTCTTTTTTTTTGGATTTCCTGTACTTTTTTCGGATTTTTATAAATTTCTAGAACTTTGAGAATTTTGGAGGCATTATTGTCTTGAAAAACAAAAAATTTAGGATATTTTAAGCCTAAAATCAGTGAATTCCCATTTTTTTTGACCTAGTTATGATTTTTGGAAATTTTGAATTTTTTGAAAAAATCTAATTTTTTGCTATAAAAMTTCAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAAATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACTCTAGAACATGTCCAAAATCAGTTTTGGGGATACTTTCAAAAGTTTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAATTTTGGAGGCATTATT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAGCTCAAATTCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>GAGAATTTTGGAGGCATTATTGTCTTGAAAAACAAAAAATTTAGGATATTTTAAGCCTAAAATCAGTGAATTCCCATTTTTTTTGACCTAGTTATGATTTTTGGAAATTTTGAATTTTTTGAAAAAATCTAATTTTTTGCTATAAAACTTCAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GAGAATTTTGGAGGCATTATTGTCTTGAAAAACAAAAAATTTAGGATATTTTAAGCCTAAAATCAGTGAATTCCCATTTTTTTTGACCTAGTTATGATTTTTGGAAATTTTGAATTTTTTGAAAAAATCTAATTTTTTGCTATAAAAMTTCAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25485</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>46186</contig_pos>
        <strand></strand>
        <context>TTGAAAAAGt[A/G]aaataatttg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAAAAAGT</left_flank>
        <right_flank>AAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGCAGACAGATTACACGCAATGACCTGTACAACTATCTCTCTCCATCCCGTTTCTCCTTGTTTTTCTCTGCGTCTCTCACTTTTCTGTACTCTCTCGTCCCTCTTGAAAGTCTTTTTGACAATTATCTCATCCCGTATCTCAAGGTAGAATCAGTCCATGGGAGGTCAAAAGATATTAGTTATTCGAGATTTTATCTTTTTTCCCTCTTTTTTTTTGGATTTCCTGTACTTTTTTCGGATTTTTATAAATTTCTAGAACTTTGAGAATTTTGGAGGCATTATTGTCTTGAAAAACAAAAAATTTAGGATATTTTAAGCCTAAAATCAGTGAATTCCCATTTTTTTTGACCTAGTTATGATTTTTGGAAATTTTGAATTTTTTGAAAAAATCTAATTTTTTGCTATAAAACTTCAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAAATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACTCTAGAACATGTCCAAAATCAGTTTTGGGGATACTTTCAAAAGTTTTAAAAATTCCCAAAAGATTTTTTTTTTTGGAATAATTTAGATTTTCAGCCAAAGAAGCTTTTAGCTTGCAAACTTGATTCTAGATTAATTTAG</canonical>
            <polymorphic>ACGCAGACAGATTACACGCAATGACCTGTACAACTATCTCTCTCCATCCCGTTTCTCCTTGTTTTTCTCTGCGTCTCTCACTTTTCTGTACTCTCTCGTCCCTCTTGAAAGTCTTTTTGACAATTATCTCATCCCGTATCTCAAGGTAGAATCAGTCCATGGGAGGTCAAAAGATATTAGTTATTCGAGATTTTATCTTTTTTCCCTCTTTTTTTTTGGATTTCCTGTACTTTTTTCGGATTTTTATAAATTTCTAGAACTTTGAGAATTTTGGAGGCATTATTGTCTTGAAAAACAAAAAATTTAGGATATTTTAAGCCTAAAATCAGTGAATTCCCATTTTTTTTGACCTAGTTATGATTTTTGGAAATTTTGAATTTTTTGAAAAAATCTAATTTTTTGCTATAAAACTTCAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAAAAAGTRAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAAATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACTCTAGAACATGTCCAAAATCAGTTTTGGGGATACTTTCAAAAGTTTTAAAAATTCCCAAAAGATTTTTTTTTTTGGAATAATTTAGATTTTCAGCCAAAGAAGCTTTTAGCTTGCAAACTTGATTCTAGATTAATTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTATGATTTTTGGAAATTTTG</pcr_primer_p1>
		<pcr_primer_p2>CGGGATCTCTTGAAGTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>AGTTATGATTTTTGGAAATTTTGAATTTTTTGAAAAAATCTAATTTTTTGCTATAAAACTTCAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAAATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCG</canonical_amplicon>
		<polymorphic_amplicon>AGTTATGATTTTTGGAAATTTTGAATTTTTTGAAAAAATCTAATTTTTTGCTATAAAACTTCAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAAAAAGTRAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAAATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25486</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>46258</contig_pos>
        <strand></strand>
        <context>tttgaaaaaa[A/T]wwtttttttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAA</left_flank>
        <right_flank>AATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCTCTCACTTTTCTGTACTCTCTCGTCCCTCTTGAAAGTCTTTTTGACAATTATCTCATCCCGTATCTCAAGGTAGAATCAGTCCATGGGAGGTCAAAAGATATTAGTTATTCGAGATTTTATCTTTTTTCCCTCTTTTTTTTTGGATTTCCTGTACTTTTTTCGGATTTTTATAAATTTCTAGAACTTTGAGAATTTTGGAGGCATTATTGTCTTGAAAAACAAAAAATTTAGGATATTTTAAGCCTAAAATCAGTGAATTCCCATTTTTTTTGACCTAGTTATGATTTTTGGAAATTTTGAATTTTTTGAAAAAATCTAATTTTTTGCTATAAAACTTCAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAAATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACTCTAGAACATGTCCAAAATCAGTTTTGGGGATACTTTCAAAAGTTTTAAAAATTCCCAAAAGATTTTTTTTTTTGGAATAATTTAGATTTTCAGCCAAAGAAGCTTTTAGCTTGCAAACTTGATTCTAGATTAATTTAGACATCAGAATTCGATTTTGCAGCTTATTTTCACCCTAGGAAAGATCAAAAATCACTTTCGAAGATATTTTTC</canonical>
            <polymorphic>GTCTCTCACTTTTCTGTACTCTCTCGTCCCTCTTGAAAGTCTTTTTGACAATTATCTCATCCCGTATCTCAAGGTAGAATCAGTCCATGGGAGGTCAAAAGATATTAGTTATTCGAGATTTTATCTTTTTTCCCTCTTTTTTTTTGGATTTCCTGTACTTTTTTCGGATTTTTATAAATTTCTAGAACTTTGAGAATTTTGGAGGCATTATTGTCTTGAAAAACAAAAAATTTAGGATATTTTAAGCCTAAAATCAGTGAATTCCCATTTTTTTTGACCTAGTTATGATTTTTGGAAATTTTGAATTTTTTGAAAAAATCTAATTTTTTGCTATAAAACTTCAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAWAATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACTCTAGAACATGTCCAAAATCAGTTTTGGGGATACTTTCAAAAGTTTTAAAAATTCCCAAAAGATTTTTTTTTTTGGAATAATTTAGATTTTCAGCCAAAGAAGCTTTTAGCTTGCAAACTTGATTCTAGATTAATTTAGACATCAGAATTCGATTTTGCAGCTTATTTTCACCCTAGGAAAGATCAAAAATCACTTTCGAAGATATTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>176 96 81 72 71 70 65 64 37 35 34 31 27 20 19 18 15 13 12 11 10 8 8 7</canonical_bands>
                <polymorphic_bands>176 96 85 81 71 70 65 64 37 35 34 31 27 20 19 18 15 12 11 10 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAATTTGAGCTTTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CATCCAAAACTCAATTAAGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAAATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATG</canonical_amplicon>
		<polymorphic_amplicon>CAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAWAATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25487</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>46259</contig_pos>
        <strand></strand>
        <context>ttgaaaaaaw[A/T]wttttttttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAA</left_flank>
        <right_flank>ATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCTCACTTTTCTGTACTCTCTCGTCCCTCTTGAAAGTCTTTTTGACAATTATCTCATCCCGTATCTCAAGGTAGAATCAGTCCATGGGAGGTCAAAAGATATTAGTTATTCGAGATTTTATCTTTTTTCCCTCTTTTTTTTTGGATTTCCTGTACTTTTTTCGGATTTTTATAAATTTCTAGAACTTTGAGAATTTTGGAGGCATTATTGTCTTGAAAAACAAAAAATTTAGGATATTTTAAGCCTAAAATCAGTGAATTCCCATTTTTTTTGACCTAGTTATGATTTTTGGAAATTTTGAATTTTTTGAAAAAATCTAATTTTTTGCTATAAAACTTCAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAAATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACTCTAGAACATGTCCAAAATCAGTTTTGGGGATACTTTCAAAAGTTTTAAAAATTCCCAAAAGATTTTTTTTTTTGGAATAATTTAGATTTTCAGCCAAAGAAGCTTTTAGCTTGCAAACTTGATTCTAGATTAATTTAGACATCAGAATTCGATTTTGCAGCTTATTTTCACCCTAGGAAAGATCAAAAATCACTTTCGAAGATATTTTTCA</canonical>
            <polymorphic>TCTCTCACTTTTCTGTACTCTCTCGTCCCTCTTGAAAGTCTTTTTGACAATTATCTCATCCCGTATCTCAAGGTAGAATCAGTCCATGGGAGGTCAAAAGATATTAGTTATTCGAGATTTTATCTTTTTTCCCTCTTTTTTTTTGGATTTCCTGTACTTTTTTCGGATTTTTATAAATTTCTAGAACTTTGAGAATTTTGGAGGCATTATTGTCTTGAAAAACAAAAAATTTAGGATATTTTAAGCCTAAAATCAGTGAATTCCCATTTTTTTTGACCTAGTTATGATTTTTGGAAATTTTGAATTTTTTGAAAAAATCTAATTTTTTGCTATAAAACTTCAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAWATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACTCTAGAACATGTCCAAAATCAGTTTTGGGGATACTTTCAAAAGTTTTAAAAATTCCCAAAAGATTTTTTTTTTTGGAATAATTTAGATTTTCAGCCAAAGAAGCTTTTAGCTTGCAAACTTGATTCTAGATTAATTTAGACATCAGAATTCGATTTTGCAGCTTATTTTCACCCTAGGAAAGATCAAAAATCACTTTCGAAGATATTTTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>175 96 81 72 71 70 66 64 37 35 34 31 27 20 19 18 15 13 12 11 10 8 8 7</canonical_bands>
                <polymorphic_bands>175 96 85 81 71 70 66 64 37 35 34 31 27 20 19 18 15 12 11 10 8 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>127 71 70 66 63 58 53 48 40 37 34 31 29 25 24 20 19 19 18 18 15 14 14 13 12 11 10 10 8 8 8 7</canonical_bands>
                <polymorphic_bands>127 71 70 66 63 58 53 48 40 37 34 31 29 27 25 24 20 19 19 18 18 15 14 12 11 10 10 8 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAATTTGAGCTTTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CATCCAAAACTCAATTAAGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAAATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATG</canonical_amplicon>
		<polymorphic_amplicon>CAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAWATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25488</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>46260</contig_pos>
        <strand></strand>
        <context>tgaaaaaaww[A/T]tttttttttC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAA</left_flank>
        <right_flank>TTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTCACTTTTCTGTACTCTCTCGTCCCTCTTGAAAGTCTTTTTGACAATTATCTCATCCCGTATCTCAAGGTAGAATCAGTCCATGGGAGGTCAAAAGATATTAGTTATTCGAGATTTTATCTTTTTTCCCTCTTTTTTTTTGGATTTCCTGTACTTTTTTCGGATTTTTATAAATTTCTAGAACTTTGAGAATTTTGGAGGCATTATTGTCTTGAAAAACAAAAAATTTAGGATATTTTAAGCCTAAAATCAGTGAATTCCCATTTTTTTTGACCTAGTTATGATTTTTGGAAATTTTGAATTTTTTGAAAAAATCTAATTTTTTGCTATAAAACTTCAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAAATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACTCTAGAACATGTCCAAAATCAGTTTTGGGGATACTTTCAAAAGTTTTAAAAATTCCCAAAAGATTTTTTTTTTTGGAATAATTTAGATTTTCAGCCAAAGAAGCTTTTAGCTTGCAAACTTGATTCTAGATTAATTTAGACATCAGAATTCGATTTTGCAGCTTATTTTCACCCTAGGAAAGATCAAAAATCACTTTCGAAGATATTTTTCAA</canonical>
            <polymorphic>CTCTCACTTTTCTGTACTCTCTCGTCCCTCTTGAAAGTCTTTTTGACAATTATCTCATCCCGTATCTCAAGGTAGAATCAGTCCATGGGAGGTCAAAAGATATTAGTTATTCGAGATTTTATCTTTTTTCCCTCTTTTTTTTTGGATTTCCTGTACTTTTTTCGGATTTTTATAAATTTCTAGAACTTTGAGAATTTTGGAGGCATTATTGTCTTGAAAAACAAAAAATTTAGGATATTTTAAGCCTAAAATCAGTGAATTCCCATTTTTTTTGACCTAGTTATGATTTTTGGAAATTTTGAATTTTTTGAAAAAATCTAATTTTTTGCTATAAAACTTCAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAAWTTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACTCTAGAACATGTCCAAAATCAGTTTTGGGGATACTTTCAAAAGTTTTAAAAATTCCCAAAAGATTTTTTTTTTTGGAATAATTTAGATTTTCAGCCAAAGAAGCTTTTAGCTTGCAAACTTGATTCTAGATTAATTTAGACATCAGAATTCGATTTTGCAGCTTATTTTCACCCTAGGAAAGATCAAAAATCACTTTCGAAGATATTTTTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>174 96 81 72 71 70 67 64 37 35 34 31 27 20 19 18 15 13 12 11 10 8 8 7</canonical_bands>
                <polymorphic_bands>174 96 85 81 71 70 67 64 37 35 34 31 27 20 19 18 15 12 11 10 8 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>127 71 70 67 63 58 53 47 40 37 34 31 29 25 24 20 19 19 18 18 15 14 14 13 12 11 10 10 8 8 8 7</canonical_bands>
                <polymorphic_bands>127 71 70 67 63 58 53 47 40 37 34 31 29 27 25 24 20 19 19 18 18 15 14 12 11 10 10 8 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAATTTGAGCTTTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CATCCAAAACTCAATTAAGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAAATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATG</canonical_amplicon>
		<polymorphic_amplicon>CAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAAWTTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25489</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>46324</contig_pos>
        <strand>+</strand>
        <context>TGGATTGTTT[A/C]TAGACAAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTT</left_flank>
        <right_flank>TAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCAAGGTAGAATCAGTCCATGGGAGGTCAAAAGATATTAGTTATTCGAGATTTTATCTTTTTTCCCTCTTTTTTTTTGGATTTCCTGTACTTTTTTCGGATTTTTATAAATTTCTAGAACTTTGAGAATTTTGGAGGCATTATTGTCTTGAAAAACAAAAAATTTAGGATATTTTAAGCCTAAAATCAGTGAATTCCCATTTTTTTTGACCTAGTTATGATTTTTGGAAATTTTGAATTTTTTGAAAAAATCTAATTTTTTGCTATAAAACTTCAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAAATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACTCTAGAACATGTCCAAAATCAGTTTTGGGGATACTTTCAAAAGTTTTAAAAATTCCCAAAAGATTTTTTTTTTTGGAATAATTTAGATTTTCAGCCAAAGAAGCTTTTAGCTTGCAAACTTGATTCTAGATTAATTTAGACATCAGAATTCGATTTTGCAGCTTATTTTCACCCTAGGAAAGATCAAAAATCACTTTCGAAGATATTTTTCAAAAACCGAAAATTCCCAAAAAAAAATTTTTTTTGAAACTTTATAGATTTTTGACAAAAGTAGATT</canonical>
            <polymorphic>TCTCAAGGTAGAATCAGTCCATGGGAGGTCAAAAGATATTAGTTATTCGAGATTTTATCTTTTTTCCCTCTTTTTTTTTGGATTTCCTGTACTTTTTTCGGATTTTTATAAATTTCTAGAACTTTGAGAATTTTGGAGGCATTATTGTCTTGAAAAACAAAAAATTTAGGATATTTTAAGCCTAAAATCAGTGAATTCCCATTTTTTTTGACCTAGTTATGATTTTTGGAAATTTTGAATTTTTTGAAAAAATCTAATTTTTTGCTATAAAACTTCAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAAATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTMTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACTCTAGAACATGTCCAAAATCAGTTTTGGGGATACTTTCAAAAGTTTTAAAAATTCCCAAAAGATTTTTTTTTTTGGAATAATTTAGATTTTCAGCCAAAGAAGCTTTTAGCTTGCAAACTTGATTCTAGATTAATTTAGACATCAGAATTCGATTTTGCAGCTTATTTTCACCCTAGGAAAGATCAAAAATCACTTTCGAAGATATTTTTCAAAAACCGAAAATTCCCAAAAAAAAATTTTTTTTGAAACTTTATAGATTTTTGACAAAAGTAGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>287 129 124 116 103 97 48 48 48</canonical_bands>
                <polymorphic_bands>335 129 124 116 103 97 48 48</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>317 177 151 124 68 48 48 33 26 8</canonical_bands>
                <polymorphic_bands>317 203 151 124 68 48 48 33 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>384 177 152 124 115 48</canonical_bands>
                <polymorphic_bands>561 152 124 115 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAATTTGAGCTTTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CATCCAAAACTCAATTAAGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAAATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATG</canonical_amplicon>
		<polymorphic_amplicon>CAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAAATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTMTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25490</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>46360</contig_pos>
        <strand></strand>
        <context>gaattttttt[T/A]aaatttttaC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTT</left_flank>
        <right_flank>AAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTAGTTATTCGAGATTTTATCTTTTTTCCCTCTTTTTTTTTGGATTTCCTGTACTTTTTTCGGATTTTTATAAATTTCTAGAACTTTGAGAATTTTGGAGGCATTATTGTCTTGAAAAACAAAAAATTTAGGATATTTTAAGCCTAAAATCAGTGAATTCCCATTTTTTTTGACCTAGTTATGATTTTTGGAAATTTTGAATTTTTTGAAAAAATCTAATTTTTTGCTATAAAACTTCAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAAATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACTCTAGAACATGTCCAAAATCAGTTTTGGGGATACTTTCAAAAGTTTTAAAAATTCCCAAAAGATTTTTTTTTTTGGAATAATTTAGATTTTCAGCCAAAGAAGCTTTTAGCTTGCAAACTTGATTCTAGATTAATTTAGACATCAGAATTCGATTTTGCAGCTTATTTTCACCCTAGGAAAGATCAAAAATCACTTTCGAAGATATTTTTCAAAAACCGAAAATTCCCAAAAAAAAATTTTTTTTGAAACTTTATAGATTTTTGACAAAAGTAGATTTTAGCTAGCAAAAATTGTTCTAGACTAATTTTGATT</canonical>
            <polymorphic>TATTAGTTATTCGAGATTTTATCTTTTTTCCCTCTTTTTTTTTGGATTTCCTGTACTTTTTTCGGATTTTTATAAATTTCTAGAACTTTGAGAATTTTGGAGGCATTATTGTCTTGAAAAACAAAAAATTTAGGATATTTTAAGCCTAAAATCAGTGAATTCCCATTTTTTTTGACCTAGTTATGATTTTTGGAAATTTTGAATTTTTTGAAAAAATCTAATTTTTTGCTATAAAACTTCAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAAATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTWAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACTCTAGAACATGTCCAAAATCAGTTTTGGGGATACTTTCAAAAGTTTTAAAAATTCCCAAAAGATTTTTTTTTTTGGAATAATTTAGATTTTCAGCCAAAGAAGCTTTTAGCTTGCAAACTTGATTCTAGATTAATTTAGACATCAGAATTCGATTTTGCAGCTTATTTTCACCCTAGGAAAGATCAAAAATCACTTTCGAAGATATTTTTCAAAAACCGAAAATTCCCAAAAAAAAATTTTTTTTGAAACTTTATAGATTTTTGACAAAAGTAGATTTTAGCTAGCAAAAATTGTTCTAGACTAATTTTGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 266 234</canonical_bands>
                <polymorphic_bands>734 266</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>204 182 145 140 106 85 81 25 22 10</canonical_bands>
                <polymorphic_bands>204 182 170 140 106 85 81 22 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAGATGGTATTTGGATTGTT</pcr_primer_p1>
		<pcr_primer_p2>AGTGGAAATACGCTGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACT</canonical_amplicon>
		<polymorphic_amplicon>GAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTWAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25491</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>46404</contig_pos>
        <strand>+</strand>
        <context>TTTGGATGTC[A/G]TTTTCAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTC</left_flank>
        <right_flank>TTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTCCTGTACTTTTTTCGGATTTTTATAAATTTCTAGAACTTTGAGAATTTTGGAGGCATTATTGTCTTGAAAAACAAAAAATTTAGGATATTTTAAGCCTAAAATCAGTGAATTCCCATTTTTTTTGACCTAGTTATGATTTTTGGAAATTTTGAATTTTTTGAAAAAATCTAATTTTTTGCTATAAAACTTCAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAAATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACTCTAGAACATGTCCAAAATCAGTTTTGGGGATACTTTCAAAAGTTTTAAAAATTCCCAAAAGATTTTTTTTTTTGGAATAATTTAGATTTTCAGCCAAAGAAGCTTTTAGCTTGCAAACTTGATTCTAGATTAATTTAGACATCAGAATTCGATTTTGCAGCTTATTTTCACCCTAGGAAAGATCAAAAATCACTTTCGAAGATATTTTTCAAAAACCGAAAATTCCCAAAAAAAAATTTTTTTTGAAACTTTATAGATTTTTGACAAAAGTAGATTTTAGCTAGCAAAAATTGTTCTAGACTAATTTTGATTTTAAAATTCGATTTTTCAGCTCATTTTCACCCTAAAATGACTCT</canonical>
            <polymorphic>GATTTCCTGTACTTTTTTCGGATTTTTATAAATTTCTAGAACTTTGAGAATTTTGGAGGCATTATTGTCTTGAAAAACAAAAAATTTAGGATATTTTAAGCCTAAAATCAGTGAATTCCCATTTTTTTTGACCTAGTTATGATTTTTGGAAATTTTGAATTTTTTGAAAAAATCTAATTTTTTGCTATAAAACTTCAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAAATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCRTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACTCTAGAACATGTCCAAAATCAGTTTTGGGGATACTTTCAAAAGTTTTAAAAATTCCCAAAAGATTTTTTTTTTTGGAATAATTTAGATTTTCAGCCAAAGAAGCTTTTAGCTTGCAAACTTGATTCTAGATTAATTTAGACATCAGAATTCGATTTTGCAGCTTATTTTCACCCTAGGAAAGATCAAAAATCACTTTCGAAGATATTTTTCAAAAACCGAAAATTCCCAAAAAAAAATTTTTTTTGAAACTTTATAGATTTTTGACAAAAGTAGATTTTAGCTAGCAAAAATTGTTCTAGACTAATTTTGATTTTAAAATTCGATTTTTCAGCTCATTTTCACCCTAAAATGACTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGATGGTATTTGGATTGTT</pcr_primer_p1>
		<pcr_primer_p2>AGTGGAAATACGCTGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACT</canonical_amplicon>
		<polymorphic_amplicon>GAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCRTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25492</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>46472</contig_pos>
        <strand>+</strand>
        <context>ACCACAAGTA[G/T]TGYCCCAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTA</left_flank>
        <right_flank>TGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGAAAAACAAAAAATTTAGGATATTTTAAGCCTAAAATCAGTGAATTCCCATTTTTTTTGACCTAGTTATGATTTTTGGAAATTTTGAATTTTTTGAAAAAATCTAATTTTTTGCTATAAAACTTCAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAAATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACTCTAGAACATGTCCAAAATCAGTTTTGGGGATACTTTCAAAAGTTTTAAAAATTCCCAAAAGATTTTTTTTTTTGGAATAATTTAGATTTTCAGCCAAAGAAGCTTTTAGCTTGCAAACTTGATTCTAGATTAATTTAGACATCAGAATTCGATTTTGCAGCTTATTTTCACCCTAGGAAAGATCAAAAATCACTTTCGAAGATATTTTTCAAAAACCGAAAATTCCCAAAAAAAAATTTTTTTTGAAACTTTATAGATTTTTGACAAAAGTAGATTTTAGCTAGCAAAAATTGTTCTAGACTAATTTTGATTTTAAAATTCGATTTTTCAGCTCATTTTCACCCTAAAATGACTCTTACACTGCTTTTCTCTTGTTTTCATGCTCATGTACCCCGGAAGTAGTTTGACCTCTCTCTTTTCCTCT</canonical>
            <polymorphic>CTTGAAAAACAAAAAATTTAGGATATTTTAAGCCTAAAATCAGTGAATTCCCATTTTTTTTGACCTAGTTATGATTTTTGGAAATTTTGAATTTTTTGAAAAAATCTAATTTTTTGCTATAAAACTTCAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAAATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTAKTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACTCTAGAACATGTCCAAAATCAGTTTTGGGGATACTTTCAAAAGTTTTAAAAATTCCCAAAAGATTTTTTTTTTTGGAATAATTTAGATTTTCAGCCAAAGAAGCTTTTAGCTTGCAAACTTGATTCTAGATTAATTTAGACATCAGAATTCGATTTTGCAGCTTATTTTCACCCTAGGAAAGATCAAAAATCACTTTCGAAGATATTTTTCAAAAACCGAAAATTCCCAAAAAAAAATTTTTTTTGAAACTTTATAGATTTTTGACAAAAGTAGATTTTAGCTAGCAAAAATTGTTCTAGACTAATTTTGATTTTAAAATTCGATTTTTCAGCTCATTTTCACCCTAAAATGACTCTTACACTGCTTTTCTCTTGTTTTCATGCTCATGTACCCCGGAAGTAGTTTGACCTCTCTCTTTTCCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGATGGTATTTGGATTGTT</pcr_primer_p1>
		<pcr_primer_p2>AGTGGAAATACGCTGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACT</canonical_amplicon>
		<polymorphic_amplicon>GAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTAKTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25493</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>46475</contig_pos>
        <strand>+</strand>
        <context>ACAAGTAKTG[C/T]CCCAAAATGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTG</left_flank>
        <right_flank>CCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAACAAAAAATTTAGGATATTTTAAGCCTAAAATCAGTGAATTCCCATTTTTTTTGACCTAGTTATGATTTTTGGAAATTTTGAATTTTTTGAAAAAATCTAATTTTTTGCTATAAAACTTCAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAAATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACTCTAGAACATGTCCAAAATCAGTTTTGGGGATACTTTCAAAAGTTTTAAAAATTCCCAAAAGATTTTTTTTTTTGGAATAATTTAGATTTTCAGCCAAAGAAGCTTTTAGCTTGCAAACTTGATTCTAGATTAATTTAGACATCAGAATTCGATTTTGCAGCTTATTTTCACCCTAGGAAAGATCAAAAATCACTTTCGAAGATATTTTTCAAAAACCGAAAATTCCCAAAAAAAAATTTTTTTTGAAACTTTATAGATTTTTGACAAAAGTAGATTTTAGCTAGCAAAAATTGTTCTAGACTAATTTTGATTTTAAAATTCGATTTTTCAGCTCATTTTCACCCTAAAATGACTCTTACACTGCTTTTCTCTTGTTTTCATGCTCATGTACCCCGGAAGTAGTTTGACCTCTCTCTTTTCCTCTCCT</canonical>
            <polymorphic>GAAAAACAAAAAATTTAGGATATTTTAAGCCTAAAATCAGTGAATTCCCATTTTTTTTGACCTAGTTATGATTTTTGGAAATTTTGAATTTTTTGAAAAAATCTAATTTTTTGCTATAAAACTTCAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAAATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGYCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACTCTAGAACATGTCCAAAATCAGTTTTGGGGATACTTTCAAAAGTTTTAAAAATTCCCAAAAGATTTTTTTTTTTGGAATAATTTAGATTTTCAGCCAAAGAAGCTTTTAGCTTGCAAACTTGATTCTAGATTAATTTAGACATCAGAATTCGATTTTGCAGCTTATTTTCACCCTAGGAAAGATCAAAAATCACTTTCGAAGATATTTTTCAAAAACCGAAAATTCCCAAAAAAAAATTTTTTTTGAAACTTTATAGATTTTTGACAAAAGTAGATTTTAGCTAGCAAAAATTGTTCTAGACTAATTTTGATTTTAAAATTCGATTTTTCAGCTCATTTTCACCCTAAAATGACTCTTACACTGCTTTTCTCTTGTTTTCATGCTCATGTACCCCGGAAGTAGTTTGACCTCTCTCTTTTCCTCTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGATGGTATTTGGATTGTT</pcr_primer_p1>
		<pcr_primer_p2>AGTGGAAATACGCTGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACT</canonical_amplicon>
		<polymorphic_amplicon>GAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGYCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25494</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>46526</contig_pos>
        <strand>+</strand>
        <context>CCGGAAAAAC[A/G]AAATTTCCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAAC</left_flank>
        <right_flank>AAATTTCCAGCGTATTTCCACTCTAGAACATGTCCAAAATCAGTTTTGGG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTGACCTAGTTATGATTTTTGGAAATTTTGAATTTTTTGAAAAAATCTAATTTTTTGCTATAAAACTTCAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAAATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACTCTAGAACATGTCCAAAATCAGTTTTGGGGATACTTTCAAAAGTTTTAAAAATTCCCAAAAGATTTTTTTTTTTGGAATAATTTAGATTTTCAGCCAAAGAAGCTTTTAGCTTGCAAACTTGATTCTAGATTAATTTAGACATCAGAATTCGATTTTGCAGCTTATTTTCACCCTAGGAAAGATCAAAAATCACTTTCGAAGATATTTTTCAAAAACCGAAAATTCCCAAAAAAAAATTTTTTTTGAAACTTTATAGATTTTTGACAAAAGTAGATTTTAGCTAGCAAAAATTGTTCTAGACTAATTTTGATTTTAAAATTCGATTTTTCAGCTCATTTTCACCCTAAAATGACTCTTACACTGCTTTTCTCTTGTTTTCATGCTCATGTACCCCGGAAGTAGTTTGACCTCTCTCTTTTCCTCTCCTTATTCCAAATGTCAACTAATTGGCAGAAAAATGGTCTGAAACTTGTTCTAT</canonical>
            <polymorphic>TTTTTTTGACCTAGTTATGATTTTTGGAAATTTTGAATTTTTTGAAAAAATCTAATTTTTTGCTATAAAACTTCAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAAATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACRAAATTTCCAGCGTATTTCCACTCTAGAACATGTCCAAAATCAGTTTTGGGGATACTTTCAAAAGTTTTAAAAATTCCCAAAAGATTTTTTTTTTTGGAATAATTTAGATTTTCAGCCAAAGAAGCTTTTAGCTTGCAAACTTGATTCTAGATTAATTTAGACATCAGAATTCGATTTTGCAGCTTATTTTCACCCTAGGAAAGATCAAAAATCACTTTCGAAGATATTTTTCAAAAACCGAAAATTCCCAAAAAAAAATTTTTTTTGAAACTTTATAGATTTTTGACAAAAGTAGATTTTAGCTAGCAAAAATTGTTCTAGACTAATTTTGATTTTAAAATTCGATTTTTCAGCTCATTTTCACCCTAAAATGACTCTTACACTGCTTTTCTCTTGTTTTCATGCTCATGTACCCCGGAAGTAGTTTGACCTCTCTCTTTTCCTCTCCTTATTCCAAATGTCAACTAATTGGCAGAAAAATGGTCTGAAACTTGTTCTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTTAATTGAGTTTTGGATGTC</pcr_primer_p1>
		<pcr_primer_p2>GCTTCTTTGGCTGAAAATCT</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>CTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACTCTAGAACATGTCCAAAATCAGTTTTGGGGATACTTTCAAAAGTTTTAAAAATTCCCAAAAGATTTTTTTTTTTGGAATAATTTAGATTTTCAGCCAAAGAAGC</canonical_amplicon>
		<polymorphic_amplicon>CTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACRAAATTTCCAGCGTATTTCCACTCTAGAACATGTCCAAAATCAGTTTTGGGGATACTTTCAAAAGTTTTAAAAATTCCCAAAAGATTTTTTTTTTTGGAATAATTTAGATTTTCAGCCAAAGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25495</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>46599</contig_pos>
        <strand></strand>
        <context>AGTTTTAAAA[A/C]TTCCCAAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTAGAACATGTCCAAAATCAGTTTTGGGGATACTTTCAAAAGTTTTAAAA</left_flank>
        <right_flank>TTCCCAAAAGATTTTTTTTTTTGGAATAATTTAGATTTTCAGCCAAAGAA</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAAATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACTCTAGAACATGTCCAAAATCAGTTTTGGGGATACTTTCAAAAGTTTTAAAAATTCCCAAAAGATTTTTTTTTTTGGAATAATTTAGATTTTCAGCCAAAGAAGCTTTTAGCTTGCAAACTTGATTCTAGATTAATTTAGACATCAGAATTCGATTTTGCAGCTTATTTTCACCCTAGGAAAGATCAAAAATCACTTTCGAAGATATTTTTCAAAAACCGAAAATTCCCAAAAAAAAATTTTTTTTGAAACTTTATAGATTTTTGACAAAAGTAGATTTTAGCTAGCAAAAATTGTTCTAGACTAATTTTGATTTTAAAATTCGATTTTTCAGCTCATTTTCACCCTAAAATGACTCTTACACTGCTTTTCTCTTGTTTTCATGCTCATGTACCCCGGAAGTAGTTTGACCTCTCTCTTTTCCTCTCCTTATTCCAAATGTCAACTAATTGGCAGAAAAATGGTCTGAAACTTGTTCTATACTAAATTTGACCCAAAAATTGGATTTGTCAACTACTTTTAGTCTAGGAGTAGTTCAAAATCAGTTTTTGGGA</canonical>
            <polymorphic>CAAACTACCGTAACTTTTTGGGTTTTCGTTCGATTTTGATGAAAATTTGATTTTCAAAAATTTCAGAATTTGAGCTTTGAAAAAGTAAAATAATTTGATAAAATTTAATAAAATTTAATAATTTTTGGGCATTTCAAAAATTTGAAAATTTGAAAAAAAAATTTTTTTTTCAAAATTGCAAAAAATACTTCAAGAGATCCCGAAAGATGGTATTTGGATTGTTTCTAGACAAATTTTTGCTGAAAATATTGAATTTTTTTTAAATTTTTACCCTAGAATGACTCTTAATTGAGTTTTGGATGTCGTTTTCAAAATATGCCAAAAAAAATTTTTTTTTGAATTTTTTGGTTTTTTAGATTTTTACCACAAGTATTGCCCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACTCTAGAACATGTCCAAAATCAGTTTTGGGGATACTTTCAAAAGTTTTAAAAMTTCCCAAAAGATTTTTTTTTTTGGAATAATTTAGATTTTCAGCCAAAGAAGCTTTTAGCTTGCAAACTTGATTCTAGATTAATTTAGACATCAGAATTCGATTTTGCAGCTTATTTTCACCCTAGGAAAGATCAAAAATCACTTTCGAAGATATTTTTCAAAAACCGAAAATTCCCAAAAAAAAATTTTTTTTGAAACTTTATAGATTTTTGACAAAAGTAGATTTTAGCTAGCAAAAATTGTTCTAGACTAATTTTGATTTTAAAATTCGATTTTTCAGCTCATTTTCACCCTAAAATGACTCTTACACTGCTTTTCTCTTGTTTTCATGCTCATGTACCCCGGAAGTAGTTTGACCTCTCTCTTTTCCTCTCCTTATTCCAAATGTCAACTAATTGGCAGAAAAATGGTCTGAAACTTGTTCTATACTAAATTTGACCCAAAAATTGGATTTGTCAACTACTTTTAGTCTAGGAGTAGTTCAAAATCAGTTTTTGGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>166 96 82 75 72 71 70 69 64 43 35 27 20 19 15 14 13 12 11 10 8 8</canonical_bands>
                <polymorphic_bands>166 166 82 75 72 71 69 64 43 35 27 20 19 15 14 13 12 11 10 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>128 75 71 70 58 56 54 53 43 40 38 29 25 24 20 19 19 15 14 14 14 14 14 13 13 12 11 10 10 8 8 8</canonical_bands>
                <polymorphic_bands>128 99 75 71 58 56 54 53 43 40 38 25 24 20 19 19 15 14 14 14 14 14 13 13 12 11 10 10 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCAAAATGTGGTATTAAACTT</pcr_primer_p1>
		<pcr_primer_p2>ATCTTTCCTAGGGTGAAAATAAG</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACTCTAGAACATGTCCAAAATCAGTTTTGGGGATACTTTCAAAAGTTTTAAAAATTCCCAAAAGATTTTTTTTTTTGGAATAATTTAGATTTTCAGCCAAAGAAGCTTTTAGCTTGCAAACTTGATTCTAGATTAATTTAGACATCAGAATTCGATTTTGCAGCTTATTTTCACCCTAGGAAAGAT</canonical_amplicon>
		<polymorphic_amplicon>CCCAAAATGTGGTATTAAACTTTTTCTAGACTAAATTTAACCGGAAAAACGAAATTTCCAGCGTATTTCCACTCTAGAACATGTCCAAAATCAGTTTTGGGGATACTTTCAAAAGTTTTAAAAMTTCCCAAAAGATTTTTTTTTTTGGAATAATTTAGATTTTCAGCCAAAGAAGCTTTTAGCTTGCAAACTTGATTCTAGATTAATTTAGACATCAGAATTCGATTTTGCAGCTTATTTTCACCCTAGGAAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25497</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>58847</contig_pos>
        <strand></strand>
        <context>tttgtcttgt[C/T]gtgagcttaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAGTTTTCGAACAATCTTAAAATAACTACAAGATTTGTGTTTGTCTTGT</left_flank>
        <right_flank>GTGAGCTTAAAAATAAGTATAAACACGACCCATTTTGCTCGATTTTGATT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGATTGAAAATTTTTGCATTTTTAAATTTGTCTTGCTGTCAGCTTCAAAATGAGTATAATCATGACCCAGGAAAGTTTTGAAATTTGACTTTAAAGGCGCATGGACCCTCGAAAAATCAAAATCGAGTAAAGTGTGTCATGTTTATACTCATTTTGAAGTTCTCAATGAGCCAAATTCATATTTCTAACTTATTTCTAAATTTTCAGCACCTGGAAAGTTCCCTGGACAATATTTCGAGCCTTTTCGGCGAAATTGGATCCCTACCAATGGATGAGGATTCGCGTGGAAAGCTGACAAAATTGACGGAAGCAAAGGATGCAATTGCTCAGAAAGCAAATGAGACACTAGCGGTTTTATCACGGACCGTCTCGGAATGTGAAGATTTTGAGAAGCAATTATGCTGTTCCAGGTAAGTCTTTTGGAGTTTTCAAAACTACCGTATCTCTATTAGTTTTCGAACAATCTTAAAATAACTACAAGATTTGTGTTTGTCTTGTCGTGAGCTTAAAAATAAGTATAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAATCAAATTTCAAAATTTTTCAAAGTAGGTCATGATTATACTCATTTTGAAGTTGACAACAAGCCAAATTCAAAAATGCAAAAAAAAATTTGATTTTGCTCAAAAATTGGCAGAGGTGCGGTAGTTCCAACATTTCTGAAATTCAAAAAGTTCAAACTACCGTATCTCTGTTAGTTTTCGAACAATTTTAAAATAATTACAAGATTTGTGTTTGTCTTGTTGTGAGCTTAAAAATGAGCACAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAGTCAAATTTTAAAACTTTTCAAAATAGGTCATGATTATACTCATTTTGAAGCTGACAACAAGCCAAATTCAAAAATGCAAACATTTTTGATCTTGTTCCTAATTTGGTAGAGATACGGTAGTTTGAAAAT</canonical>
            <polymorphic>TGGATTGAAAATTTTTGCATTTTTAAATTTGTCTTGCTGTCAGCTTCAAAATGAGTATAATCATGACCCAGGAAAGTTTTGAAATTTGACTTTAAAGGCGCATGGACCCTCGAAAAATCAAAATCGAGTAAAGTGTGTCATGTTTATACTCATTTTGAAGTTCTCAATGAGCCAAATTCATATTTCTAACTTATTTCTAAATTTTCAGCACCTGGAAAGTTCCCTGGACAATATTTCGAGCCTTTTCGGCGAAATTGGATCCCTACCAATGGATGAGGATTCGCGTGGAAAGCTGACAAAATTGACGGAAGCAAAGGATGCAATTGCTCAGAAAGCAAATGAGACACTAGCGGTTTTATCACGGACCGTCTCGGAATGTGAAGATTTTGAGAAGCAATTATGCTGTTCCAGGTAAGTCTTTTGGAGTTTTCAAAACTACCGTATCTCTATTAGTTTTCGAACAATCTTAAAATAACTACAAGATTTGTGTTTGTCTTGTYGTGAGCTTAAAAATAAGTATAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAATCAAATTTCAAAATTTTTCAAAGTAGGTCATGATTATACTCATTTTGAAGTTGACAACAAGCCAAATTCAAAAATGCAAAAAAAAATTTGATTTTGCTCAAAAATTGGCAGAGGTGCGGTAGTTCCAACATTTCTGAAATTCAAAAAGTTCAAACTACCGTATCTCTGTTAGTTTTCGAACAATTTTAAAATAATTACAAGATTTGTGTTTGTCTTGTTGTGAGCTTAAAAATGAGCACAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAGTCAAATTTTAAAACTTTTCAAAATAGGTCATGATTATACTCATTTTGAAGCTGACAACAAGCCAAATTCAAAAATGCAAACATTTTTGATCTTGTTCCTAATTTGGTAGAGATACGGTAGTTTGAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>438 295 105 100 62</canonical_bands>
                <polymorphic_bands>543 295 100 62</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCAGGTAAGTCTTTTGGAGT</pcr_primer_p1>
		<pcr_primer_p2>TCAGATTTTAGGGGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>656</pcr_amplicon_size>
		<canonical_amplicon>TCCAGGTAAGTCTTTTGGAGTTTTCAAAACTACCGTATCTCTATTAGTTTTCGAACAATCTTAAAATAACTACAAGATTTGTGTTTGTCTTGTCGTGAGCTTAAAAATAAGTA</canonical_amplicon>
		<polymorphic_amplicon>TCCAGGTAAGTCTTTTGGAGTTTTCAAAACTACCGTATCTCTATTAGTTTTCGAACAATCTTAAAATAACTACAAGATTTGTGTTTGTCTTGTYGTGAGCTTAAAAATAAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25498</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>58923</contig_pos>
        <strand></strand>
        <context>cgcctttaaa[A/G]tcaaatttca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAA</left_flank>
        <right_flank>TCAAATTTCAAAATTTTTCAAAGTAGGTCATGATTATACTCATTTTGAAG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGAAATTTGACTTTAAAGGCGCATGGACCCTCGAAAAATCAAAATCGAGTAAAGTGTGTCATGTTTATACTCATTTTGAAGTTCTCAATGAGCCAAATTCATATTTCTAACTTATTTCTAAATTTTCAGCACCTGGAAAGTTCCCTGGACAATATTTCGAGCCTTTTCGGCGAAATTGGATCCCTACCAATGGATGAGGATTCGCGTGGAAAGCTGACAAAATTGACGGAAGCAAAGGATGCAATTGCTCAGAAAGCAAATGAGACACTAGCGGTTTTATCACGGACCGTCTCGGAATGTGAAGATTTTGAGAAGCAATTATGCTGTTCCAGGTAAGTCTTTTGGAGTTTTCAAAACTACCGTATCTCTATTAGTTTTCGAACAATCTTAAAATAACTACAAGATTTGTGTTTGTCTTGTCGTGAGCTTAAAAATAAGTATAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAATCAAATTTCAAAATTTTTCAAAGTAGGTCATGATTATACTCATTTTGAAGTTGACAACAAGCCAAATTCAAAAATGCAAAAAAAAATTTGATTTTGCTCAAAAATTGGCAGAGGTGCGGTAGTTCCAACATTTCTGAAATTCAAAAAGTTCAAACTACCGTATCTCTGTTAGTTTTCGAACAATTTTAAAATAATTACAAGATTTGTGTTTGTCTTGTTGTGAGCTTAAAAATGAGCACAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAGTCAAATTTTAAAACTTTTCAAAATAGGTCATGATTATACTCATTTTGAAGCTGACAACAAGCCAAATTCAAAAATGCAAACATTTTTGATCTTGTTCCTAATTTGGTAGAGATACGGTAGTTTGAAAATTTAAAATTTTCAAAAATTCCAAAAAAAATTTTTTTTTTCGAAAAAAACCCCCTAAAATCTGAAATTTCAGAACTGG</canonical>
            <polymorphic>TTTTGAAATTTGACTTTAAAGGCGCATGGACCCTCGAAAAATCAAAATCGAGTAAAGTGTGTCATGTTTATACTCATTTTGAAGTTCTCAATGAGCCAAATTCATATTTCTAACTTATTTCTAAATTTTCAGCACCTGGAAAGTTCCCTGGACAATATTTCGAGCCTTTTCGGCGAAATTGGATCCCTACCAATGGATGAGGATTCGCGTGGAAAGCTGACAAAATTGACGGAAGCAAAGGATGCAATTGCTCAGAAAGCAAATGAGACACTAGCGGTTTTATCACGGACCGTCTCGGAATGTGAAGATTTTGAGAAGCAATTATGCTGTTCCAGGTAAGTCTTTTGGAGTTTTCAAAACTACCGTATCTCTATTAGTTTTCGAACAATCTTAAAATAACTACAAGATTTGTGTTTGTCTTGTCGTGAGCTTAAAAATAAGTATAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAARTCAAATTTCAAAATTTTTCAAAGTAGGTCATGATTATACTCATTTTGAAGTTGACAACAAGCCAAATTCAAAAATGCAAAAAAAAATTTGATTTTGCTCAAAAATTGGCAGAGGTGCGGTAGTTCCAACATTTCTGAAATTCAAAAAGTTCAAACTACCGTATCTCTGTTAGTTTTCGAACAATTTTAAAATAATTACAAGATTTGTGTTTGTCTTGTTGTGAGCTTAAAAATGAGCACAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAGTCAAATTTTAAAACTTTTCAAAATAGGTCATGATTATACTCATTTTGAAGCTGACAACAAGCCAAATTCAAAAATGCAAACATTTTTGATCTTGTTCCTAATTTGGTAGAGATACGGTAGTTTGAAAATTTAAAATTTTCAAAAATTCCAAAAAAAATTTTTTTTTTCGAAAAAAACCCCCTAAAATCTGAAATTTCAGAACTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAGGTAAGTCTTTTGGAGT</pcr_primer_p1>
		<pcr_primer_p2>TCAGATTTTAGGGGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>656</pcr_amplicon_size>
		<canonical_amplicon>TCCAGGTAAGTCTTTTGGAGTTTTCAAAACTACCGTATCTCTATTAGTTTTCGAACAATCTTAAAATAACTACAAGATTTGTGTTTGTCTTGTCGTGAGCTTAAAAATAAGTATAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAATCAAATTTCAAAATTTTTCAAAGTAGGTCATGATTATACTCATTTTGAAGTTGACAACAAGCCAAATTCAAAAATGCAAAAAAAAATTTGATTTTGCTCAAAAATTGGCAGAGGTGCGGTAGTTCCAACATTTCTGAAATTCAAAAAGTTCAAACTACCGTATCTCTGTTAGTTTTCGAACAATTTTAAAATAATTACAAGATTTGTGTTTGTCTTGTTGTGAGCTTAAAAATGAGCACAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAGTCAAATTTTAAAACTTTTCAAAATAGGTCATGATTATACTCATTTTGAAGCTGACAACAAGCCAAATTCAAAAATGCAAACATTTTTGATCTTGTTCCTAATTTGGTAGAGATACGGTAGTTTGAAAATTTAAAATTTTCAAAAATTCCAAAAAAAATTTTTTTTTTCGAAAAAAACCCCCTAAAATCTGA</canonical_amplicon>
		<polymorphic_amplicon>TCCAGGTAAGTCTTTTGGAGTTTTCAAAACTACCGTATCTCTATTAGTTTTCGAACAATCTTAAAATAACTACAAGATTTGTGTTTGTCTTGTCGTGAGCTTAAAAATAAGTATAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAARTCAAATTTCAAAATTTTTCAAAGTAGGTCATGATTATACTCATTTTGAAGTTGACAACAAGCCAAATTCAAAAATGCAAAAAAAAATTTGATTTTGCTCAAAAATTGGCAGAGGTGCGGTAGTTCCAACATTTCTGAAATTCAAAAAGTTCAAACTACCGTATCTCTGTTAGTTTTCGAACAATTTTAAAATAATTACAAGATTTGTGTTTGTCTTGTTGTGAGCTTAAAAATGAGCACAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAGTCAAATTTTAAAACTTTTCAAAATAGGTCATGATTATACTCATTTTGAAGCTGACAACAAGCCAAATTCAAAAATGCAAACATTTTTGATCTTGTTCCTAATTTGGTAGAGATACGGTAGTTTGAAAATTTAAAATTTTCAAAAATTCCAAAAAAAATTTTTTTTTTCGAAAAAAACCCCCTAAAATCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25499</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>58937</contig_pos>
        <strand></strand>
        <context>aatttcaaaa[T/C]ttttcaaart</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAATCAAATTTCAAAA</left_flank>
        <right_flank>TTTTCAAAGTAGGTCATGATTATACTCATTTTGAAGTTGACAACAAGCCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAAAGGCGCATGGACCCTCGAAAAATCAAAATCGAGTAAAGTGTGTCATGTTTATACTCATTTTGAAGTTCTCAATGAGCCAAATTCATATTTCTAACTTATTTCTAAATTTTCAGCACCTGGAAAGTTCCCTGGACAATATTTCGAGCCTTTTCGGCGAAATTGGATCCCTACCAATGGATGAGGATTCGCGTGGAAAGCTGACAAAATTGACGGAAGCAAAGGATGCAATTGCTCAGAAAGCAAATGAGACACTAGCGGTTTTATCACGGACCGTCTCGGAATGTGAAGATTTTGAGAAGCAATTATGCTGTTCCAGGTAAGTCTTTTGGAGTTTTCAAAACTACCGTATCTCTATTAGTTTTCGAACAATCTTAAAATAACTACAAGATTTGTGTTTGTCTTGTCGTGAGCTTAAAAATAAGTATAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAATCAAATTTCAAAATTTTTCAAAGTAGGTCATGATTATACTCATTTTGAAGTTGACAACAAGCCAAATTCAAAAATGCAAAAAAAAATTTGATTTTGCTCAAAAATTGGCAGAGGTGCGGTAGTTCCAACATTTCTGAAATTCAAAAAGTTCAAACTACCGTATCTCTGTTAGTTTTCGAACAATTTTAAAATAATTACAAGATTTGTGTTTGTCTTGTTGTGAGCTTAAAAATGAGCACAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAGTCAAATTTTAAAACTTTTCAAAATAGGTCATGATTATACTCATTTTGAAGCTGACAACAAGCCAAATTCAAAAATGCAAACATTTTTGATCTTGTTCCTAATTTGGTAGAGATACGGTAGTTTGAAAATTTAAAATTTTCAAAAATTCCAAAAAAAATTTTTTTTTTCGAAAAAAACCCCCTAAAATCTGAAATTTCAGAACTGGAGTGCCAGAATCGG</canonical>
            <polymorphic>TTTAAAGGCGCATGGACCCTCGAAAAATCAAAATCGAGTAAAGTGTGTCATGTTTATACTCATTTTGAAGTTCTCAATGAGCCAAATTCATATTTCTAACTTATTTCTAAATTTTCAGCACCTGGAAAGTTCCCTGGACAATATTTCGAGCCTTTTCGGCGAAATTGGATCCCTACCAATGGATGAGGATTCGCGTGGAAAGCTGACAAAATTGACGGAAGCAAAGGATGCAATTGCTCAGAAAGCAAATGAGACACTAGCGGTTTTATCACGGACCGTCTCGGAATGTGAAGATTTTGAGAAGCAATTATGCTGTTCCAGGTAAGTCTTTTGGAGTTTTCAAAACTACCGTATCTCTATTAGTTTTCGAACAATCTTAAAATAACTACAAGATTTGTGTTTGTCTTGTCGTGAGCTTAAAAATAAGTATAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAATCAAATTTCAAAAYTTTTCAAAGTAGGTCATGATTATACTCATTTTGAAGTTGACAACAAGCCAAATTCAAAAATGCAAAAAAAAATTTGATTTTGCTCAAAAATTGGCAGAGGTGCGGTAGTTCCAACATTTCTGAAATTCAAAAAGTTCAAACTACCGTATCTCTGTTAGTTTTCGAACAATTTTAAAATAATTACAAGATTTGTGTTTGTCTTGTTGTGAGCTTAAAAATGAGCACAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAGTCAAATTTTAAAACTTTTCAAAATAGGTCATGATTATACTCATTTTGAAGCTGACAACAAGCCAAATTCAAAAATGCAAACATTTTTGATCTTGTTCCTAATTTGGTAGAGATACGGTAGTTTGAAAATTTAAAATTTTCAAAAATTCCAAAAAAAATTTTTTTTTTCGAAAAAAACCCCCTAAAATCTGAAATTTCAGAACTGGAGTGCCAGAATCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>380 161 84 62 61 53 53 36 28 25 20 12 10 8 7</canonical_bands>
                <polymorphic_bands>380 161 84 62 61 61 53 36 28 25 20 12 10 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>184 106 84 74 61 53 53 47 44 36 35 35 28 27 25 22 20 18 12 11 10 8 7</canonical_bands>
                <polymorphic_bands>184 106 84 74 61 61 53 47 44 36 35 35 28 27 25 22 20 18 12 11 10 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCAGGTAAGTCTTTTGGAGT</pcr_primer_p1>
		<pcr_primer_p2>TCAGATTTTAGGGGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>656</pcr_amplicon_size>
		<canonical_amplicon>TCCAGGTAAGTCTTTTGGAGTTTTCAAAACTACCGTATCTCTATTAGTTTTCGAACAATCTTAAAATAACTACAAGATTTGTGTTTGTCTTGTCGTGAGCTTAAAAATAAGTATAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAATCAAATTTCAAAATTTTTCAAAGTAGGTCATGATTATACTCATTTTGAAGTTGACAACAAGCCAAATTCAAAAATGCAAAAAAAAATTTGATTTTGCTCAAAAATTGGCAGAGGTGCGGTAGTTCCAACATTTCTGAAATTCAAAAAGTTCAAACTACCGTATCTCTGTTAGTTTTCGAACAATTTTAAAATAATTACAAGATTTGTGTTTGTCTTGTTGTGAGCTTAAAAATGAGCACAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAGTCAAATTTTAAAACTTTTCAAAATAGGTCATGATTATACTCATTTTGAAGCTGACAACAAGCCAAATTCAAAAATGCAAACATTTTTGATCTTGTTCCTAATTTGGTAGAGATACGGTAGTTTGAAAATTTAAAATTTTCAAAAATTCCAAAAAAAATTTTTTTTTTCGAAAAAAACCCCCTAAAATCTGA</canonical_amplicon>
		<polymorphic_amplicon>TCCAGGTAAGTCTTTTGGAGTTTTCAAAACTACCGTATCTCTATTAGTTTTCGAACAATCTTAAAATAACTACAAGATTTGTGTTTGTCTTGTCGTGAGCTTAAAAATAAGTATAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAATCAAATTTCAAAAYTTTTCAAAGTAGGTCATGATTATACTCATTTTGAAGTTGACAACAAGCCAAATTCAAAAATGCAAAAAAAAATTTGATTTTGCTCAAAAATTGGCAGAGGTGCGGTAGTTCCAACATTTCTGAAATTCAAAAAGTTCAAACTACCGTATCTCTGTTAGTTTTCGAACAATTTTAAAATAATTACAAGATTTGTGTTTGTCTTGTTGTGAGCTTAAAAATGAGCACAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAGTCAAATTTTAAAACTTTTCAAAATAGGTCATGATTATACTCATTTTGAAGCTGACAACAAGCCAAATTCAAAAATGCAAACATTTTTGATCTTGTTCCTAATTTGGTAGAGATACGGTAGTTTGAAAATTTAAAATTTTCAAAAATTCCAAAAAAAATTTTTTTTTTCGAAAAAAACCCCCTAAAATCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25500</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>58946</contig_pos>
        <strand></strand>
        <context>ayttttcaaa[G/A]taggtcatga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTTCGAGGGTCCATGCGCCTTTAAAATCAAATTTCAAAATTTTTCAAA</left_flank>
        <right_flank>TAGGTCATGATTATACTCATTTTGAAGTTGACAACAAGCCAAATTCAAAA</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATGGACCCTCGAAAAATCAAAATCGAGTAAAGTGTGTCATGTTTATACTCATTTTGAAGTTCTCAATGAGCCAAATTCATATTTCTAACTTATTTCTAAATTTTCAGCACCTGGAAAGTTCCCTGGACAATATTTCGAGCCTTTTCGGCGAAATTGGATCCCTACCAATGGATGAGGATTCGCGTGGAAAGCTGACAAAATTGACGGAAGCAAAGGATGCAATTGCTCAGAAAGCAAATGAGACACTAGCGGTTTTATCACGGACCGTCTCGGAATGTGAAGATTTTGAGAAGCAATTATGCTGTTCCAGGTAAGTCTTTTGGAGTTTTCAAAACTACCGTATCTCTATTAGTTTTCGAACAATCTTAAAATAACTACAAGATTTGTGTTTGTCTTGTCGTGAGCTTAAAAATAAGTATAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAATCAAATTTCAAAATTTTTCAAAGTAGGTCATGATTATACTCATTTTGAAGTTGACAACAAGCCAAATTCAAAAATGCAAAAAAAAATTTGATTTTGCTCAAAAATTGGCAGAGGTGCGGTAGTTCCAACATTTCTGAAATTCAAAAAGTTCAAACTACCGTATCTCTGTTAGTTTTCGAACAATTTTAAAATAATTACAAGATTTGTGTTTGTCTTGTTGTGAGCTTAAAAATGAGCACAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAGTCAAATTTTAAAACTTTTCAAAATAGGTCATGATTATACTCATTTTGAAGCTGACAACAAGCCAAATTCAAAAATGCAAACATTTTTGATCTTGTTCCTAATTTGGTAGAGATACGGTAGTTTGAAAATTTAAAATTTTCAAAAATTCCAAAAAAAATTTTTTTTTTCGAAAAAAACCCCCTAAAATCTGAAATTTCAGAACTGGAGTGCCAGAATCGGCTTCCTACT</canonical>
            <polymorphic>GCATGGACCCTCGAAAAATCAAAATCGAGTAAAGTGTGTCATGTTTATACTCATTTTGAAGTTCTCAATGAGCCAAATTCATATTTCTAACTTATTTCTAAATTTTCAGCACCTGGAAAGTTCCCTGGACAATATTTCGAGCCTTTTCGGCGAAATTGGATCCCTACCAATGGATGAGGATTCGCGTGGAAAGCTGACAAAATTGACGGAAGCAAAGGATGCAATTGCTCAGAAAGCAAATGAGACACTAGCGGTTTTATCACGGACCGTCTCGGAATGTGAAGATTTTGAGAAGCAATTATGCTGTTCCAGGTAAGTCTTTTGGAGTTTTCAAAACTACCGTATCTCTATTAGTTTTCGAACAATCTTAAAATAACTACAAGATTTGTGTTTGTCTTGTCGTGAGCTTAAAAATAAGTATAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAATCAAATTTCAAAATTTTTCAAARTAGGTCATGATTATACTCATTTTGAAGTTGACAACAAGCCAAATTCAAAAATGCAAAAAAAAATTTGATTTTGCTCAAAAATTGGCAGAGGTGCGGTAGTTCCAACATTTCTGAAATTCAAAAAGTTCAAACTACCGTATCTCTGTTAGTTTTCGAACAATTTTAAAATAATTACAAGATTTGTGTTTGTCTTGTTGTGAGCTTAAAAATGAGCACAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAGTCAAATTTTAAAACTTTTCAAAATAGGTCATGATTATACTCATTTTGAAGCTGACAACAAGCCAAATTCAAAAATGCAAACATTTTTGATCTTGTTCCTAATTTGGTAGAGATACGGTAGTTTGAAAATTTAAAATTTTCAAAAATTCCAAAAAAAATTTTTTTTTTCGAAAAAAACCCCCTAAAATCTGAAATTTCAGAACTGGAGTGCCAGAATCGGCTTCCTACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAGGTAAGTCTTTTGGAGT</pcr_primer_p1>
		<pcr_primer_p2>TCAGATTTTAGGGGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>656</pcr_amplicon_size>
		<canonical_amplicon>TCCAGGTAAGTCTTTTGGAGTTTTCAAAACTACCGTATCTCTATTAGTTTTCGAACAATCTTAAAATAACTACAAGATTTGTGTTTGTCTTGTCGTGAGCTTAAAAATAAGTATAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAATCAAATTTCAAAATTTTTCAAAGTAGGTCATGATTATACTCATTTTGAAGTTGACAACAAGCCAAATTCAAAAATGCAAAAAAAAATTTGATTTTGCTCAAAAATTGGCAGAGGTGCGGTAGTTCCAACATTTCTGAAATTCAAAAAGTTCAAACTACCGTATCTCTGTTAGTTTTCGAACAATTTTAAAATAATTACAAGATTTGTGTTTGTCTTGTTGTGAGCTTAAAAATGAGCACAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAGTCAAATTTTAAAACTTTTCAAAATAGGTCATGATTATACTCATTTTGAAGCTGACAACAAGCCAAATTCAAAAATGCAAACATTTTTGATCTTGTTCCTAATTTGGTAGAGATACGGTAGTTTGAAAATTTAAAATTTTCAAAAATTCCAAAAAAAATTTTTTTTTTCGAAAAAAACCCCCTAAAATCTGA</canonical_amplicon>
		<polymorphic_amplicon>TCCAGGTAAGTCTTTTGGAGTTTTCAAAACTACCGTATCTCTATTAGTTTTCGAACAATCTTAAAATAACTACAAGATTTGTGTTTGTCTTGTCGTGAGCTTAAAAATAAGTATAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAATCAAATTTCAAAATTTTTCAAARTAGGTCATGATTATACTCATTTTGAAGTTGACAACAAGCCAAATTCAAAAATGCAAAAAAAAATTTGATTTTGCTCAAAAATTGGCAGAGGTGCGGTAGTTCCAACATTTCTGAAATTCAAAAAGTTCAAACTACCGTATCTCTGTTAGTTTTCGAACAATTTTAAAATAATTACAAGATTTGTGTTTGTCTTGTTGTGAGCTTAAAAATGAGCACAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAGTCAAATTTTAAAACTTTTCAAAATAGGTCATGATTATACTCATTTTGAAGCTGACAACAAGCCAAATTCAAAAATGCAAACATTTTTGATCTTGTTCCTAATTTGGTAGAGATACGGTAGTTTGAAAATTTAAAATTTTCAAAAATTCCAAAAAAAATTTTTTTTTTCGAAAAAAACCCCCTAAAATCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25501</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>58974</contig_pos>
        <strand></strand>
        <context>cattttgaag[T/C]tgacaacaag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCAAATTTCAAAATTTTTCAAAGTAGGTCATGATTATACTCATTTTGAAG</left_flank>
        <right_flank>TGACAACAAGCCAAATTCAAAAATGCAAAAAAAAATTTGATTTTGCTCAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAAAGTGTGTCATGTTTATACTCATTTTGAAGTTCTCAATGAGCCAAATTCATATTTCTAACTTATTTCTAAATTTTCAGCACCTGGAAAGTTCCCTGGACAATATTTCGAGCCTTTTCGGCGAAATTGGATCCCTACCAATGGATGAGGATTCGCGTGGAAAGCTGACAAAATTGACGGAAGCAAAGGATGCAATTGCTCAGAAAGCAAATGAGACACTAGCGGTTTTATCACGGACCGTCTCGGAATGTGAAGATTTTGAGAAGCAATTATGCTGTTCCAGGTAAGTCTTTTGGAGTTTTCAAAACTACCGTATCTCTATTAGTTTTCGAACAATCTTAAAATAACTACAAGATTTGTGTTTGTCTTGTCGTGAGCTTAAAAATAAGTATAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAATCAAATTTCAAAATTTTTCAAAGTAGGTCATGATTATACTCATTTTGAAGTTGACAACAAGCCAAATTCAAAAATGCAAAAAAAAATTTGATTTTGCTCAAAAATTGGCAGAGGTGCGGTAGTTCCAACATTTCTGAAATTCAAAAAGTTCAAACTACCGTATCTCTGTTAGTTTTCGAACAATTTTAAAATAATTACAAGATTTGTGTTTGTCTTGTTGTGAGCTTAAAAATGAGCACAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAGTCAAATTTTAAAACTTTTCAAAATAGGTCATGATTATACTCATTTTGAAGCTGACAACAAGCCAAATTCAAAAATGCAAACATTTTTGATCTTGTTCCTAATTTGGTAGAGATACGGTAGTTTGAAAATTTAAAATTTTCAAAAATTCCAAAAAAAATTTTTTTTTTCGAAAAAAACCCCCTAAAATCTGAAATTTCAGAACTGGAGTGCCAGAATCGGCTTCCTACTGCAAGCTAGGAAATCGGCGGACATTTCA</canonical>
            <polymorphic>GTAAAGTGTGTCATGTTTATACTCATTTTGAAGTTCTCAATGAGCCAAATTCATATTTCTAACTTATTTCTAAATTTTCAGCACCTGGAAAGTTCCCTGGACAATATTTCGAGCCTTTTCGGCGAAATTGGATCCCTACCAATGGATGAGGATTCGCGTGGAAAGCTGACAAAATTGACGGAAGCAAAGGATGCAATTGCTCAGAAAGCAAATGAGACACTAGCGGTTTTATCACGGACCGTCTCGGAATGTGAAGATTTTGAGAAGCAATTATGCTGTTCCAGGTAAGTCTTTTGGAGTTTTCAAAACTACCGTATCTCTATTAGTTTTCGAACAATCTTAAAATAACTACAAGATTTGTGTTTGTCTTGTCGTGAGCTTAAAAATAAGTATAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAATCAAATTTCAAAATTTTTCAAAGTAGGTCATGATTATACTCATTTTGAAGYTGACAACAAGCCAAATTCAAAAATGCAAAAAAAAATTTGATTTTGCTCAAAAATTGGCAGAGGTGCGGTAGTTCCAACATTTCTGAAATTCAAAAAGTTCAAACTACCGTATCTCTGTTAGTTTTCGAACAATTTTAAAATAATTACAAGATTTGTGTTTGTCTTGTTGTGAGCTTAAAAATGAGCACAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAGTCAAATTTTAAAACTTTTCAAAATAGGTCATGATTATACTCATTTTGAAGCTGACAACAAGCCAAATTCAAAAATGCAAACATTTTTGATCTTGTTCCTAATTTGGTAGAGATACGGTAGTTTGAAAATTTAAAATTTTCAAAAATTCCAAAAAAAATTTTTTTTTTCGAAAAAAACCCCCTAAAATCTGAAATTTCAGAACTGGAGTGCCAGAATCGGCTTCCTACTGCAAGCTAGGAAATCGGCGGACATTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCAGGTAAGTCTTTTGGAGT</pcr_primer_p1>
		<pcr_primer_p2>TCAGATTTTAGGGGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>656</pcr_amplicon_size>
		<canonical_amplicon>TCCAGGTAAGTCTTTTGGAGTTTTCAAAACTACCGTATCTCTATTAGTTTTCGAACAATCTTAAAATAACTACAAGATTTGTGTTTGTCTTGTCGTGAGCTTAAAAATAAGTATAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAATCAAATTTCAAAATTTTTCAAAGTAGGTCATGATTATACTCATTTTGAAGTTGACAACAAGCCAAATTCAAAAATGCAAAAAAAAATTTGATTTTGCTCAAAAATTGGCAGAGGTGCGGTAGTTCCAACATTTCTGAAATTCAAAAAGTTCAAACTACCGTATCTCTGTTAGTTTTCGAACAATTTTAAAATAATTACAAGATTTGTGTTTGTCTTGTTGTGAGCTTAAAAATGAGCACAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAGTCAAATTTTAAAACTTTTCAAAATAGGTCATGATTATACTCATTTTGAAGCTGACAACAAGCCAAATTCAAAAATGCAAACATTTTTGATCTTGTTCCTAATTTGGTAGAGATACGGTAGTTTGAAAATTTAAAATTTTCAAAAATTCCAAAAAAAATTTTTTTTTTCGAAAAAAACCCCCTAAAATCTGA</canonical_amplicon>
		<polymorphic_amplicon>TCCAGGTAAGTCTTTTGGAGTTTTCAAAACTACCGTATCTCTATTAGTTTTCGAACAATCTTAAAATAACTACAAGATTTGTGTTTGTCTTGTCGTGAGCTTAAAAATAAGTATAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAATCAAATTTCAAAATTTTTCAAAGTAGGTCATGATTATACTCATTTTGAAGYTGACAACAAGCCAAATTCAAAAATGCAAAAAAAAATTTGATTTTGCTCAAAAATTGGCAGAGGTGCGGTAGTTCCAACATTTCTGAAATTCAAAAAGTTCAAACTACCGTATCTCTGTTAGTTTTCGAACAATTTTAAAATAATTACAAGATTTGTGTTTGTCTTGTTGTGAGCTTAAAAATGAGCACAAACACGACCCATTTTGCTCGATTTTGATTTTTCGAGGGTCCATGCGCCTTTAAAGTCAAATTTTAAAACTTTTCAAAATAGGTCATGATTATACTCATTTTGAAGCTGACAACAAGCCAAATTCAAAAATGCAAACATTTTTGATCTTGTTCCTAATTTGGTAGAGATACGGTAGTTTGAAAATTTAAAATTTTCAAAAATTCCAAAAAAAATTTTTTTTTTCGAAAAAAACCCCCTAAAATCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25502</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>60335</contig_pos>
        <strand></strand>
        <context>aggttatgtt[T/C]tggcwyattt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTAGATCCAATTTTTGGGAAATGAGCAAAATTAAGGAAGCAGGTTATGTT</left_flank>
        <right_flank>TGGCTTATTTTGAACTTCAGAACAGCTCAAATTTGGTCGTGTTTAGGTTC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGAAGGAGGATGCTGTGCGGATGCGGGAACAGTTGAACCATGCGAATGTGAGTTGGAATTTTGGAAATTTGACTGAAAATTTGAATTTGGCTTGAAAAGAGCTTCGAAATGAGTATAAACAAGGTCTAGTTTCAAAAAATGTGATTTTTTGGGAATATCGAAAAATTCAAACTACCGTATCACGGTCAGTCTACGAGCAACCTCAAAATTTTTACTCAAAATGTGTTTAGCACGTTGAGAGCTCTAAAATGAGCATAAACACGACTAGATTTGCCTTTGAAAAATTTGAAAAGAAAAATTTTGAAATTTGACCTTAAAGGCGCATGACCTTAAAAAAATTGAAATTGATCAAAATAGGTCGTGTTTAGGCTCGTTTTGAAGCTCTAATCGTGCTTGACTCGAAAATGTAAAAAGCAATAAATTAGGACAAAAATGAGCAAGGTTATGGTAGATCCAATTTTTGGGAAATGAGCAAAATTAAGGAAGCAGGTTATGTTTTGGCTTATTTTGAACTTCAGAACAGCTCAAATTTGGTCGTGTTTAGGTTCATTTTGAAGCACTGAACCTGGAAAATTCAAAAAATTGATTTTCAGGAAACCATGACAGAGCTCTGTCGAAAATTCAACGAGTTTAAACGTCCCAAAGGCTTCGAGGAGAAGCTGGAAAAAGTGCTCATAACCTTATCAAACGTAGAAATGGGTCTAGATGATACCACAGGAATCGATGGAGCAGAATGTGGTGGAGCCCTGATGGAAGTTCGAGCTCTGGTCCGGATGCTCGACGGAGCACAAGAGAAGTGGAAGGATTTGTCGGAGAATCGAGAGCAACTAGTTAAGGATCATGTTCTAGATGAGGAAGCTTCCAGAGAGACCCTTCAAAAACTACAGTATGCCAAAACGAAATCCAAAGAGCTGTATGACCGTAGTTCGACGTGTATTGAACGACTTGAGGACTGTGTTGAGATGTATCAGAGATTGCTTATGGAAACTGATGAAATT</canonical>
            <polymorphic>GGAGAAGGAGGATGCTGTGCGGATGCGGGAACAGTTGAACCATGCGAATGTGAGTTGGAATTTTGGAAATTTGACTGAAAATTTGAATTTGGCTTGAAAAGAGCTTCGAAATGAGTATAAACAAGGTCTAGTTTCAAAAAATGTGATTTTTTGGGAATATCGAAAAATTCAAACTACCGTATCACGGTCAGTCTACGAGCAACCTCAAAATTTTTACTCAAAATGTGTTTAGCACGTTGAGAGCTCTAAAATGAGCATAAACACGACTAGATTTGCCTTTGAAAAATTTGAAAAGAAAAATTTTGAAATTTGACCTTAAAGGCGCATGACCTTAAAAAAATTGAAATTGATCAAAATAGGTCGTGTTTAGGCTCGTTTTGAAGCTCTAATCGTGCTTGACTCGAAAATGTAAAAAGCAATAAATTAGGACAAAAATGAGCAAGGTTATGGTAGATCCAATTTTTGGGAAATGAGCAAAATTAAGGAAGCAGGTTATGTTYTGGCTTATTTTGAACTTCAGAACAGCTCAAATTTGGTCGTGTTTAGGTTCATTTTGAAGCACTGAACCTGGAAAATTCAAAAAATTGATTTTCAGGAAACCATGACAGAGCTCTGTCGAAAATTCAACGAGTTTAAACGTCCCAAAGGCTTCGAGGAGAAGCTGGAAAAAGTGCTCATAACCTTATCAAACGTAGAAATGGGTCTAGATGATACCACAGGAATCGATGGAGCAGAATGTGGTGGAGCCCTGATGGAAGTTCGAGCTCTGGTCCGGATGCTCGACGGAGCACAAGAGAAGTGGAAGGATTTGTCGGAGAATCGAGAGCAACTAGTTAAGGATCATGTTCTAGATGAGGAAGCTTCCAGAGAGACCCTTCAAAAACTACAGTATGCCAAAACGAAATCCAAAGAGCTGTATGACCGTAGTTCGACGTGTATTGAACGACTTGAGGACTGTGTTGAGATGTATCAGAGATTGCTTATGGAAACTGATGAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAAAATTGAAGGAGATGA</pcr_primer_p1>
		<pcr_primer_p2>TGATAAGGTTATGAGCACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>721</pcr_amplicon_size>
		<canonical_amplicon>TTTGGCTTATTTTGAACTTCAGAACAGCTCAAATTTGGTCGTGTTTAGGTTCATTTTGAAGCACTGAACCTGGAAAATTCAAAAAATTGATTTTCAGGAAACCATGACAGAGCTCTGTCGAAAATTCAACGAGTTTAAACGTCCCAAAGGCTTCGAGGAGAAGCTGGAAAAAGTGCTCATAACCTTATCA</canonical_amplicon>
		<polymorphic_amplicon>TYTGGCTTATTTTGAACTTCAGAACAGCTCAAATTTGGTCGTGTTTAGGTTCATTTTGAAGCACTGAACCTGGAAAATTCAAAAAATTGATTTTCAGGAAACCATGACAGAGCTCTGTCGAAAATTCAACGAGTTTAAACGTCCCAAAGGCTTCGAGGAGAAGCTGGAAAAAGTGCTCATAACCTTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25503</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>60340</contig_pos>
        <strand></strand>
        <context>atgttytggc[T/A]yattttgaas</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCCAATTTTTGGGAAATGAGCAAAATTAAGGAAGCAGGTTATGTTTTGGC</left_flank>
        <right_flank>TATTTTGAACTTCAGAACAGCTCAAATTTGGTCGTGTTTAGGTTCATTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAGGATGCTGTGCGGATGCGGGAACAGTTGAACCATGCGAATGTGAGTTGGAATTTTGGAAATTTGACTGAAAATTTGAATTTGGCTTGAAAAGAGCTTCGAAATGAGTATAAACAAGGTCTAGTTTCAAAAAATGTGATTTTTTGGGAATATCGAAAAATTCAAACTACCGTATCACGGTCAGTCTACGAGCAACCTCAAAATTTTTACTCAAAATGTGTTTAGCACGTTGAGAGCTCTAAAATGAGCATAAACACGACTAGATTTGCCTTTGAAAAATTTGAAAAGAAAAATTTTGAAATTTGACCTTAAAGGCGCATGACCTTAAAAAAATTGAAATTGATCAAAATAGGTCGTGTTTAGGCTCGTTTTGAAGCTCTAATCGTGCTTGACTCGAAAATGTAAAAAGCAATAAATTAGGACAAAAATGAGCAAGGTTATGGTAGATCCAATTTTTGGGAAATGAGCAAAATTAAGGAAGCAGGTTATGTTTTGGCTTATTTTGAACTTCAGAACAGCTCAAATTTGGTCGTGTTTAGGTTCATTTTGAAGCACTGAACCTGGAAAATTCAAAAAATTGATTTTCAGGAAACCATGACAGAGCTCTGTCGAAAATTCAACGAGTTTAAACGTCCCAAAGGCTTCGAGGAGAAGCTGGAAAAAGTGCTCATAACCTTATCAAACGTAGAAATGGGTCTAGATGATACCACAGGAATCGATGGAGCAGAATGTGGTGGAGCCCTGATGGAAGTTCGAGCTCTGGTCCGGATGCTCGACGGAGCACAAGAGAAGTGGAAGGATTTGTCGGAGAATCGAGAGCAACTAGTTAAGGATCATGTTCTAGATGAGGAAGCTTCCAGAGAGACCCTTCAAAAACTACAGTATGCCAAAACGAAATCCAAAGAGCTGTATGACCGTAGTTCGACGTGTATTGAACGACTTGAGGACTGTGTTGAGATGTATCAGAGATTGCTTATGGAAACTGATGAAATTGAGAG</canonical>
            <polymorphic>AGGAGGATGCTGTGCGGATGCGGGAACAGTTGAACCATGCGAATGTGAGTTGGAATTTTGGAAATTTGACTGAAAATTTGAATTTGGCTTGAAAAGAGCTTCGAAATGAGTATAAACAAGGTCTAGTTTCAAAAAATGTGATTTTTTGGGAATATCGAAAAATTCAAACTACCGTATCACGGTCAGTCTACGAGCAACCTCAAAATTTTTACTCAAAATGTGTTTAGCACGTTGAGAGCTCTAAAATGAGCATAAACACGACTAGATTTGCCTTTGAAAAATTTGAAAAGAAAAATTTTGAAATTTGACCTTAAAGGCGCATGACCTTAAAAAAATTGAAATTGATCAAAATAGGTCGTGTTTAGGCTCGTTTTGAAGCTCTAATCGTGCTTGACTCGAAAATGTAAAAAGCAATAAATTAGGACAAAAATGAGCAAGGTTATGGTAGATCCAATTTTTGGGAAATGAGCAAAATTAAGGAAGCAGGTTATGTTTTGGCWTATTTTGAACTTCAGAACAGCTCAAATTTGGTCGTGTTTAGGTTCATTTTGAAGCACTGAACCTGGAAAATTCAAAAAATTGATTTTCAGGAAACCATGACAGAGCTCTGTCGAAAATTCAACGAGTTTAAACGTCCCAAAGGCTTCGAGGAGAAGCTGGAAAAAGTGCTCATAACCTTATCAAACGTAGAAATGGGTCTAGATGATACCACAGGAATCGATGGAGCAGAATGTGGTGGAGCCCTGATGGAAGTTCGAGCTCTGGTCCGGATGCTCGACGGAGCACAAGAGAAGTGGAAGGATTTGTCGGAGAATCGAGAGCAACTAGTTAAGGATCATGTTCTAGATGAGGAAGCTTCCAGAGAGACCCTTCAAAAACTACAGTATGCCAAAACGAAATCCAAAGAGCTGTATGACCGTAGTTCGACGTGTATTGAACGACTTGAGGACTGTGTTGAGATGTATCAGAGATTGCTTATGGAAACTGATGAAATTGAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>140 128 120 96 92 87 85 85 53 38 22 18 13 12 11</canonical_bands>
                <polymorphic_bands>142 140 128 96 92 87 85 85 53 38 18 13 12 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAAAATTGAAGGAGATGA</pcr_primer_p1>
		<pcr_primer_p2>TGATAAGGTTATGAGCACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>721</pcr_amplicon_size>
		<canonical_amplicon>CTTATTTTGAACTTCAGAACAGCTCAAATTTGGTCGTGTTTAGGTTCATTTTGAAGCACTGAACCTGGAAAATTCAAAAAATTGATTTTCAGGAAACCATGACAGAGCTCTGTCGAAAATTCAACGAGTTTAAACGTCCCAAAGGCTTCGAGGAGAAGCTGGAAAAAGTGCTCATAACCTTATCA</canonical_amplicon>
		<polymorphic_amplicon>CWTATTTTGAACTTCAGAACAGCTCAAATTTGGTCGTGTTTAGGTTCATTTTGAAGCACTGAACCTGGAAAATTCAAAAAATTGATTTTCAGGAAACCATGACAGAGCTCTGTCGAAAATTCAACGAGTTTAAACGTCCCAAAGGCTTCGAGGAGAAGCTGGAAAAAGTGCTCATAACCTTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25504</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>60341</contig_pos>
        <strand></strand>
        <context>tgttytggcw[T/C]attttgaast</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCAATTTTTGGGAAATGAGCAAAATTAAGGAAGCAGGTTATGTTTTGGCT</left_flank>
        <right_flank>ATTTTGAACTTCAGAACAGCTCAAATTTGGTCGTGTTTAGGTTCATTTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGGATGCTGTGCGGATGCGGGAACAGTTGAACCATGCGAATGTGAGTTGGAATTTTGGAAATTTGACTGAAAATTTGAATTTGGCTTGAAAAGAGCTTCGAAATGAGTATAAACAAGGTCTAGTTTCAAAAAATGTGATTTTTTGGGAATATCGAAAAATTCAAACTACCGTATCACGGTCAGTCTACGAGCAACCTCAAAATTTTTACTCAAAATGTGTTTAGCACGTTGAGAGCTCTAAAATGAGCATAAACACGACTAGATTTGCCTTTGAAAAATTTGAAAAGAAAAATTTTGAAATTTGACCTTAAAGGCGCATGACCTTAAAAAAATTGAAATTGATCAAAATAGGTCGTGTTTAGGCTCGTTTTGAAGCTCTAATCGTGCTTGACTCGAAAATGTAAAAAGCAATAAATTAGGACAAAAATGAGCAAGGTTATGGTAGATCCAATTTTTGGGAAATGAGCAAAATTAAGGAAGCAGGTTATGTTTTGGCTTATTTTGAACTTCAGAACAGCTCAAATTTGGTCGTGTTTAGGTTCATTTTGAAGCACTGAACCTGGAAAATTCAAAAAATTGATTTTCAGGAAACCATGACAGAGCTCTGTCGAAAATTCAACGAGTTTAAACGTCCCAAAGGCTTCGAGGAGAAGCTGGAAAAAGTGCTCATAACCTTATCAAACGTAGAAATGGGTCTAGATGATACCACAGGAATCGATGGAGCAGAATGTGGTGGAGCCCTGATGGAAGTTCGAGCTCTGGTCCGGATGCTCGACGGAGCACAAGAGAAGTGGAAGGATTTGTCGGAGAATCGAGAGCAACTAGTTAAGGATCATGTTCTAGATGAGGAAGCTTCCAGAGAGACCCTTCAAAAACTACAGTATGCCAAAACGAAATCCAAAGAGCTGTATGACCGTAGTTCGACGTGTATTGAACGACTTGAGGACTGTGTTGAGATGTATCAGAGATTGCTTATGGAAACTGATGAAATTGAGAGA</canonical>
            <polymorphic>GGAGGATGCTGTGCGGATGCGGGAACAGTTGAACCATGCGAATGTGAGTTGGAATTTTGGAAATTTGACTGAAAATTTGAATTTGGCTTGAAAAGAGCTTCGAAATGAGTATAAACAAGGTCTAGTTTCAAAAAATGTGATTTTTTGGGAATATCGAAAAATTCAAACTACCGTATCACGGTCAGTCTACGAGCAACCTCAAAATTTTTACTCAAAATGTGTTTAGCACGTTGAGAGCTCTAAAATGAGCATAAACACGACTAGATTTGCCTTTGAAAAATTTGAAAAGAAAAATTTTGAAATTTGACCTTAAAGGCGCATGACCTTAAAAAAATTGAAATTGATCAAAATAGGTCGTGTTTAGGCTCGTTTTGAAGCTCTAATCGTGCTTGACTCGAAAATGTAAAAAGCAATAAATTAGGACAAAAATGAGCAAGGTTATGGTAGATCCAATTTTTGGGAAATGAGCAAAATTAAGGAAGCAGGTTATGTTTTGGCTYATTTTGAACTTCAGAACAGCTCAAATTTGGTCGTGTTTAGGTTCATTTTGAAGCACTGAACCTGGAAAATTCAAAAAATTGATTTTCAGGAAACCATGACAGAGCTCTGTCGAAAATTCAACGAGTTTAAACGTCCCAAAGGCTTCGAGGAGAAGCTGGAAAAAGTGCTCATAACCTTATCAAACGTAGAAATGGGTCTAGATGATACCACAGGAATCGATGGAGCAGAATGTGGTGGAGCCCTGATGGAAGTTCGAGCTCTGGTCCGGATGCTCGACGGAGCACAAGAGAAGTGGAAGGATTTGTCGGAGAATCGAGAGCAACTAGTTAAGGATCATGTTCTAGATGAGGAAGCTTCCAGAGAGACCCTTCAAAAACTACAGTATGCCAAAACGAAATCCAAAGAGCTGTATGACCGTAGTTCGACGTGTATTGAACGACTTGAGGACTGTGTTGAGATGTATCAGAGATTGCTTATGGAAACTGATGAAATTGAGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAAAATTGAAGGAGATGA</pcr_primer_p1>
		<pcr_primer_p2>TGATAAGGTTATGAGCACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>721</pcr_amplicon_size>
		<canonical_amplicon>TTATTTTGAACTTCAGAACAGCTCAAATTTGGTCGTGTTTAGGTTCATTTTGAAGCACTGAACCTGGAAAATTCAAAAAATTGATTTTCAGGAAACCATGACAGAGCTCTGTCGAAAATTCAACGAGTTTAAACGTCCCAAAGGCTTCGAGGAGAAGCTGGAAAAAGTGCTCATAACCTTATCA</canonical_amplicon>
		<polymorphic_amplicon>TYATTTTGAACTTCAGAACAGCTCAAATTTGGTCGTGTTTAGGTTCATTTTGAAGCACTGAACCTGGAAAATTCAAAAAATTGATTTTCAGGAAACCATGACAGAGCTCTGTCGAAAATTCAACGAGTTTAAACGTCCCAAAGGCTTCGAGGAGAAGCTGGAAAAAGTGCTCATAACCTTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25505</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>60350</contig_pos>
        <strand></strand>
        <context>wyattttgaa[C/G]ttcagaacag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGGAAATGAGCAAAATTAAGGAAGCAGGTTATGTTTTGGCTTATTTTGAA</left_flank>
        <right_flank>TTCAGAACAGCTCAAATTTGGTCGTGTTTAGGTTCATTTTGAAGCACTGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGCGGATGCGGGAACAGTTGAACCATGCGAATGTGAGTTGGAATTTTGGAAATTTGACTGAAAATTTGAATTTGGCTTGAAAAGAGCTTCGAAATGAGTATAAACAAGGTCTAGTTTCAAAAAATGTGATTTTTTGGGAATATCGAAAAATTCAAACTACCGTATCACGGTCAGTCTACGAGCAACCTCAAAATTTTTACTCAAAATGTGTTTAGCACGTTGAGAGCTCTAAAATGAGCATAAACACGACTAGATTTGCCTTTGAAAAATTTGAAAAGAAAAATTTTGAAATTTGACCTTAAAGGCGCATGACCTTAAAAAAATTGAAATTGATCAAAATAGGTCGTGTTTAGGCTCGTTTTGAAGCTCTAATCGTGCTTGACTCGAAAATGTAAAAAGCAATAAATTAGGACAAAAATGAGCAAGGTTATGGTAGATCCAATTTTTGGGAAATGAGCAAAATTAAGGAAGCAGGTTATGTTTTGGCTTATTTTGAACTTCAGAACAGCTCAAATTTGGTCGTGTTTAGGTTCATTTTGAAGCACTGAACCTGGAAAATTCAAAAAATTGATTTTCAGGAAACCATGACAGAGCTCTGTCGAAAATTCAACGAGTTTAAACGTCCCAAAGGCTTCGAGGAGAAGCTGGAAAAAGTGCTCATAACCTTATCAAACGTAGAAATGGGTCTAGATGATACCACAGGAATCGATGGAGCAGAATGTGGTGGAGCCCTGATGGAAGTTCGAGCTCTGGTCCGGATGCTCGACGGAGCACAAGAGAAGTGGAAGGATTTGTCGGAGAATCGAGAGCAACTAGTTAAGGATCATGTTCTAGATGAGGAAGCTTCCAGAGAGACCCTTCAAAAACTACAGTATGCCAAAACGAAATCCAAAGAGCTGTATGACCGTAGTTCGACGTGTATTGAACGACTTGAGGACTGTGTTGAGATGTATCAGAGATTGCTTATGGAAACTGATGAAATTGAGAGATTCTTGGAT</canonical>
            <polymorphic>TGTGCGGATGCGGGAACAGTTGAACCATGCGAATGTGAGTTGGAATTTTGGAAATTTGACTGAAAATTTGAATTTGGCTTGAAAAGAGCTTCGAAATGAGTATAAACAAGGTCTAGTTTCAAAAAATGTGATTTTTTGGGAATATCGAAAAATTCAAACTACCGTATCACGGTCAGTCTACGAGCAACCTCAAAATTTTTACTCAAAATGTGTTTAGCACGTTGAGAGCTCTAAAATGAGCATAAACACGACTAGATTTGCCTTTGAAAAATTTGAAAAGAAAAATTTTGAAATTTGACCTTAAAGGCGCATGACCTTAAAAAAATTGAAATTGATCAAAATAGGTCGTGTTTAGGCTCGTTTTGAAGCTCTAATCGTGCTTGACTCGAAAATGTAAAAAGCAATAAATTAGGACAAAAATGAGCAAGGTTATGGTAGATCCAATTTTTGGGAAATGAGCAAAATTAAGGAAGCAGGTTATGTTTTGGCTTATTTTGAASTTCAGAACAGCTCAAATTTGGTCGTGTTTAGGTTCATTTTGAAGCACTGAACCTGGAAAATTCAAAAAATTGATTTTCAGGAAACCATGACAGAGCTCTGTCGAAAATTCAACGAGTTTAAACGTCCCAAAGGCTTCGAGGAGAAGCTGGAAAAAGTGCTCATAACCTTATCAAACGTAGAAATGGGTCTAGATGATACCACAGGAATCGATGGAGCAGAATGTGGTGGAGCCCTGATGGAAGTTCGAGCTCTGGTCCGGATGCTCGACGGAGCACAAGAGAAGTGGAAGGATTTGTCGGAGAATCGAGAGCAACTAGTTAAGGATCATGTTCTAGATGAGGAAGCTTCCAGAGAGACCCTTCAAAAACTACAGTATGCCAAAACGAAATCCAAAGAGCTGTATGACCGTAGTTCGACGTGTATTGAACGACTTGAGGACTGTGTTGAGATGTATCAGAGATTGCTTATGGAAACTGATGAAATTGAGAGATTCTTGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAAAATTGAAGGAGATGA</pcr_primer_p1>
		<pcr_primer_p2>TGATAAGGTTATGAGCACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>721</pcr_amplicon_size>
		<canonical_amplicon>ACTTCAGAACAGCTCAAATTTGGTCGTGTTTAGGTTCATTTTGAAGCACTGAACCTGGAAAATTCAAAAAATTGATTTTCAGGAAACCATGACAGAGCTCTGTCGAAAATTCAACGAGTTTAAACGTCCCAAAGGCTTCGAGGAGAAGCTGGAAAAAGTGCTCATAACCTTATCA</canonical_amplicon>
		<polymorphic_amplicon>ASTTCAGAACAGCTCAAATTTGGTCGTGTTTAGGTTCATTTTGAAGCACTGAACCTGGAAAATTCAAAAAATTGATTTTCAGGAAACCATGACAGAGCTCTGTCGAAAATTCAACGAGTTTAAACGTCCCAAAGGCTTCGAGGAGAAGCTGGAAAAAGTGCTCATAACCTTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25506</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>60383</contig_pos>
        <strand></strand>
        <context>cgtgtttagg[T/C]tcattttgaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTGGCTTATTTTGAACTTCAGAACAGCTCAAATTTGGTCGTGTTTAGG</left_flank>
        <right_flank>TCATTTTGAAGCACTGAACCTGGAAAATTCAAAAAATTGATTTTCAGGAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGAGTTGGAATTTTGGAAATTTGACTGAAAATTTGAATTTGGCTTGAAAAGAGCTTCGAAATGAGTATAAACAAGGTCTAGTTTCAAAAAATGTGATTTTTTGGGAATATCGAAAAATTCAAACTACCGTATCACGGTCAGTCTACGAGCAACCTCAAAATTTTTACTCAAAATGTGTTTAGCACGTTGAGAGCTCTAAAATGAGCATAAACACGACTAGATTTGCCTTTGAAAAATTTGAAAAGAAAAATTTTGAAATTTGACCTTAAAGGCGCATGACCTTAAAAAAATTGAAATTGATCAAAATAGGTCGTGTTTAGGCTCGTTTTGAAGCTCTAATCGTGCTTGACTCGAAAATGTAAAAAGCAATAAATTAGGACAAAAATGAGCAAGGTTATGGTAGATCCAATTTTTGGGAAATGAGCAAAATTAAGGAAGCAGGTTATGTTTTGGCTTATTTTGAACTTCAGAACAGCTCAAATTTGGTCGTGTTTAGGTTCATTTTGAAGCACTGAACCTGGAAAATTCAAAAAATTGATTTTCAGGAAACCATGACAGAGCTCTGTCGAAAATTCAACGAGTTTAAACGTCCCAAAGGCTTCGAGGAGAAGCTGGAAAAAGTGCTCATAACCTTATCAAACGTAGAAATGGGTCTAGATGATACCACAGGAATCGATGGAGCAGAATGTGGTGGAGCCCTGATGGAAGTTCGAGCTCTGGTCCGGATGCTCGACGGAGCACAAGAGAAGTGGAAGGATTTGTCGGAGAATCGAGAGCAACTAGTTAAGGATCATGTTCTAGATGAGGAAGCTTCCAGAGAGACCCTTCAAAAACTACAGTATGCCAAAACGAAATCCAAAGAGCTGTATGACCGTAGTTCGACGTGTATTGAACGACTTGAGGACTGTGTTGAGATGTATCAGAGATTGCTTATGGAAACTGATGAAATTGAGAGATTCTTGGATGAAATGGAGCAACGCCTTGATCGATATGCAGCT</canonical>
            <polymorphic>TGTGAGTTGGAATTTTGGAAATTTGACTGAAAATTTGAATTTGGCTTGAAAAGAGCTTCGAAATGAGTATAAACAAGGTCTAGTTTCAAAAAATGTGATTTTTTGGGAATATCGAAAAATTCAAACTACCGTATCACGGTCAGTCTACGAGCAACCTCAAAATTTTTACTCAAAATGTGTTTAGCACGTTGAGAGCTCTAAAATGAGCATAAACACGACTAGATTTGCCTTTGAAAAATTTGAAAAGAAAAATTTTGAAATTTGACCTTAAAGGCGCATGACCTTAAAAAAATTGAAATTGATCAAAATAGGTCGTGTTTAGGCTCGTTTTGAAGCTCTAATCGTGCTTGACTCGAAAATGTAAAAAGCAATAAATTAGGACAAAAATGAGCAAGGTTATGGTAGATCCAATTTTTGGGAAATGAGCAAAATTAAGGAAGCAGGTTATGTTTTGGCTTATTTTGAACTTCAGAACAGCTCAAATTTGGTCGTGTTTAGGYTCATTTTGAAGCACTGAACCTGGAAAATTCAAAAAATTGATTTTCAGGAAACCATGACAGAGCTCTGTCGAAAATTCAACGAGTTTAAACGTCCCAAAGGCTTCGAGGAGAAGCTGGAAAAAGTGCTCATAACCTTATCAAACGTAGAAATGGGTCTAGATGATACCACAGGAATCGATGGAGCAGAATGTGGTGGAGCCCTGATGGAAGTTCGAGCTCTGGTCCGGATGCTCGACGGAGCACAAGAGAAGTGGAAGGATTTGTCGGAGAATCGAGAGCAACTAGTTAAGGATCATGTTCTAGATGAGGAAGCTTCCAGAGAGACCCTTCAAAAACTACAGTATGCCAAAACGAAATCCAAAGAGCTGTATGACCGTAGTTCGACGTGTATTGAACGACTTGAGGACTGTGTTGAGATGTATCAGAGATTGCTTATGGAAACTGATGAAATTGAGAGATTCTTGGATGAAATGGAGCAACGCCTTGATCGATATGCAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAAAATTGAAGGAGATGA</pcr_primer_p1>
		<pcr_primer_p2>TGATAAGGTTATGAGCACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>721</pcr_amplicon_size>
		<canonical_amplicon>GTTCATTTTGAAGCACTGAACCTGGAAAATTCAAAAAATTGATTTTCAGGAAACCATGACAGAGCTCTGTCGAAAATTCAACGAGTTTAAACGTCCCAAAGGCTTCGAGGAGAAGCTGGAAAAAGTGCTCATAACCTTATCA</canonical_amplicon>
		<polymorphic_amplicon>GYTCATTTTGAAGCACTGAACCTGGAAAATTCAAAAAATTGATTTTCAGGAAACCATGACAGAGCTCTGTCGAAAATTCAACGAGTTTAAACGTCCCAAAGGCTTCGAGGAGAAGCTGGAAAAAGTGCTCATAACCTTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25507</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>60396</contig_pos>
        <strand></strand>
        <context>attttgaagc[A/G]ctraacctgg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAACTTCAGAACAGCTCAAATTTGGTCGTGTTTAGGTTCATTTTGAAGC</left_flank>
        <right_flank>CTGAACCTGGAAAATTCAAAAAATTGATTTTCAGGAAACCATGACAGAGC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGGAAATTTGACTGAAAATTTGAATTTGGCTTGAAAAGAGCTTCGAAATGAGTATAAACAAGGTCTAGTTTCAAAAAATGTGATTTTTTGGGAATATCGAAAAATTCAAACTACCGTATCACGGTCAGTCTACGAGCAACCTCAAAATTTTTACTCAAAATGTGTTTAGCACGTTGAGAGCTCTAAAATGAGCATAAACACGACTAGATTTGCCTTTGAAAAATTTGAAAAGAAAAATTTTGAAATTTGACCTTAAAGGCGCATGACCTTAAAAAAATTGAAATTGATCAAAATAGGTCGTGTTTAGGCTCGTTTTGAAGCTCTAATCGTGCTTGACTCGAAAATGTAAAAAGCAATAAATTAGGACAAAAATGAGCAAGGTTATGGTAGATCCAATTTTTGGGAAATGAGCAAAATTAAGGAAGCAGGTTATGTTTTGGCTTATTTTGAACTTCAGAACAGCTCAAATTTGGTCGTGTTTAGGTTCATTTTGAAGCACTGAACCTGGAAAATTCAAAAAATTGATTTTCAGGAAACCATGACAGAGCTCTGTCGAAAATTCAACGAGTTTAAACGTCCCAAAGGCTTCGAGGAGAAGCTGGAAAAAGTGCTCATAACCTTATCAAACGTAGAAATGGGTCTAGATGATACCACAGGAATCGATGGAGCAGAATGTGGTGGAGCCCTGATGGAAGTTCGAGCTCTGGTCCGGATGCTCGACGGAGCACAAGAGAAGTGGAAGGATTTGTCGGAGAATCGAGAGCAACTAGTTAAGGATCATGTTCTAGATGAGGAAGCTTCCAGAGAGACCCTTCAAAAACTACAGTATGCCAAAACGAAATCCAAAGAGCTGTATGACCGTAGTTCGACGTGTATTGAACGACTTGAGGACTGTGTTGAGATGTATCAGAGATTGCTTATGGAAACTGATGAAATTGAGAGATTCTTGGATGAAATGGAGCAACGCCTTGATCGATATGCAGCTAGTGATAGGCCTG</canonical>
            <polymorphic>TTTGGAAATTTGACTGAAAATTTGAATTTGGCTTGAAAAGAGCTTCGAAATGAGTATAAACAAGGTCTAGTTTCAAAAAATGTGATTTTTTGGGAATATCGAAAAATTCAAACTACCGTATCACGGTCAGTCTACGAGCAACCTCAAAATTTTTACTCAAAATGTGTTTAGCACGTTGAGAGCTCTAAAATGAGCATAAACACGACTAGATTTGCCTTTGAAAAATTTGAAAAGAAAAATTTTGAAATTTGACCTTAAAGGCGCATGACCTTAAAAAAATTGAAATTGATCAAAATAGGTCGTGTTTAGGCTCGTTTTGAAGCTCTAATCGTGCTTGACTCGAAAATGTAAAAAGCAATAAATTAGGACAAAAATGAGCAAGGTTATGGTAGATCCAATTTTTGGGAAATGAGCAAAATTAAGGAAGCAGGTTATGTTTTGGCTTATTTTGAACTTCAGAACAGCTCAAATTTGGTCGTGTTTAGGTTCATTTTGAAGCRCTGAACCTGGAAAATTCAAAAAATTGATTTTCAGGAAACCATGACAGAGCTCTGTCGAAAATTCAACGAGTTTAAACGTCCCAAAGGCTTCGAGGAGAAGCTGGAAAAAGTGCTCATAACCTTATCAAACGTAGAAATGGGTCTAGATGATACCACAGGAATCGATGGAGCAGAATGTGGTGGAGCCCTGATGGAAGTTCGAGCTCTGGTCCGGATGCTCGACGGAGCACAAGAGAAGTGGAAGGATTTGTCGGAGAATCGAGAGCAACTAGTTAAGGATCATGTTCTAGATGAGGAAGCTTCCAGAGAGACCCTTCAAAAACTACAGTATGCCAAAACGAAATCCAAAGAGCTGTATGACCGTAGTTCGACGTGTATTGAACGACTTGAGGACTGTGTTGAGATGTATCAGAGATTGCTTATGGAAACTGATGAAATTGAGAGATTCTTGGATGAAATGGAGCAACGCCTTGATCGATATGCAGCTAGTGATAGGCCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>147 135 112 102 93 84 47 43 43 39 29 29 24 23 20 11 9 7 3</canonical_bands>
                <polymorphic_bands>147 135 132 102 93 84 47 43 43 39 29 29 24 23 11 9 7 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAAAATTGAAGGAGATGA</pcr_primer_p1>
		<pcr_primer_p2>TGATAAGGTTATGAGCACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>721</pcr_amplicon_size>
		<canonical_amplicon>CACTGAACCTGGAAAATTCAAAAAATTGATTTTCAGGAAACCATGACAGAGCTCTGTCGAAAATTCAACGAGTTTAAACGTCCCAAAGGCTTCGAGGAGAAGCTGGAAAAAGTGCTCATAACCTTATCA</canonical_amplicon>
		<polymorphic_amplicon>CRCTGAACCTGGAAAATTCAAAAAATTGATTTTCAGGAAACCATGACAGAGCTCTGTCGAAAATTCAACGAGTTTAAACGTCCCAAAGGCTTCGAGGAGAAGCTGGAAAAAGTGCTCATAACCTTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25508</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>60399</contig_pos>
        <strand></strand>
        <context>ttgaagcrct[G/A]aacctggaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACTTCAGAACAGCTCAAATTTGGTCGTGTTTAGGTTCATTTTGAAGCACT</left_flank>
        <right_flank>AACCTGGAAAATTCAAAAAATTGATTTTCAGGAAACCATGACAGAGCTCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAATTTGACTGAAAATTTGAATTTGGCTTGAAAAGAGCTTCGAAATGAGTATAAACAAGGTCTAGTTTCAAAAAATGTGATTTTTTGGGAATATCGAAAAATTCAAACTACCGTATCACGGTCAGTCTACGAGCAACCTCAAAATTTTTACTCAAAATGTGTTTAGCACGTTGAGAGCTCTAAAATGAGCATAAACACGACTAGATTTGCCTTTGAAAAATTTGAAAAGAAAAATTTTGAAATTTGACCTTAAAGGCGCATGACCTTAAAAAAATTGAAATTGATCAAAATAGGTCGTGTTTAGGCTCGTTTTGAAGCTCTAATCGTGCTTGACTCGAAAATGTAAAAAGCAATAAATTAGGACAAAAATGAGCAAGGTTATGGTAGATCCAATTTTTGGGAAATGAGCAAAATTAAGGAAGCAGGTTATGTTTTGGCTTATTTTGAACTTCAGAACAGCTCAAATTTGGTCGTGTTTAGGTTCATTTTGAAGCACTGAACCTGGAAAATTCAAAAAATTGATTTTCAGGAAACCATGACAGAGCTCTGTCGAAAATTCAACGAGTTTAAACGTCCCAAAGGCTTCGAGGAGAAGCTGGAAAAAGTGCTCATAACCTTATCAAACGTAGAAATGGGTCTAGATGATACCACAGGAATCGATGGAGCAGAATGTGGTGGAGCCCTGATGGAAGTTCGAGCTCTGGTCCGGATGCTCGACGGAGCACAAGAGAAGTGGAAGGATTTGTCGGAGAATCGAGAGCAACTAGTTAAGGATCATGTTCTAGATGAGGAAGCTTCCAGAGAGACCCTTCAAAAACTACAGTATGCCAAAACGAAATCCAAAGAGCTGTATGACCGTAGTTCGACGTGTATTGAACGACTTGAGGACTGTGTTGAGATGTATCAGAGATTGCTTATGGAAACTGATGAAATTGAGAGATTCTTGGATGAAATGGAGCAACGCCTTGATCGATATGCAGCTAGTGATAGGCCTGGAG</canonical>
            <polymorphic>GGAAATTTGACTGAAAATTTGAATTTGGCTTGAAAAGAGCTTCGAAATGAGTATAAACAAGGTCTAGTTTCAAAAAATGTGATTTTTTGGGAATATCGAAAAATTCAAACTACCGTATCACGGTCAGTCTACGAGCAACCTCAAAATTTTTACTCAAAATGTGTTTAGCACGTTGAGAGCTCTAAAATGAGCATAAACACGACTAGATTTGCCTTTGAAAAATTTGAAAAGAAAAATTTTGAAATTTGACCTTAAAGGCGCATGACCTTAAAAAAATTGAAATTGATCAAAATAGGTCGTGTTTAGGCTCGTTTTGAAGCTCTAATCGTGCTTGACTCGAAAATGTAAAAAGCAATAAATTAGGACAAAAATGAGCAAGGTTATGGTAGATCCAATTTTTGGGAAATGAGCAAAATTAAGGAAGCAGGTTATGTTTTGGCTTATTTTGAACTTCAGAACAGCTCAAATTTGGTCGTGTTTAGGTTCATTTTGAAGCACTRAACCTGGAAAATTCAAAAAATTGATTTTCAGGAAACCATGACAGAGCTCTGTCGAAAATTCAACGAGTTTAAACGTCCCAAAGGCTTCGAGGAGAAGCTGGAAAAAGTGCTCATAACCTTATCAAACGTAGAAATGGGTCTAGATGATACCACAGGAATCGATGGAGCAGAATGTGGTGGAGCCCTGATGGAAGTTCGAGCTCTGGTCCGGATGCTCGACGGAGCACAAGAGAAGTGGAAGGATTTGTCGGAGAATCGAGAGCAACTAGTTAAGGATCATGTTCTAGATGAGGAAGCTTCCAGAGAGACCCTTCAAAAACTACAGTATGCCAAAACGAAATCCAAAGAGCTGTATGACCGTAGTTCGACGTGTATTGAACGACTTGAGGACTGTGTTGAGATGTATCAGAGATTGCTTATGGAAACTGATGAAATTGAGAGATTCTTGGATGAAATGGAGCAACGCCTTGATCGATATGCAGCTAGTGATAGGCCTGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAAAATTGAAGGAGATGA</pcr_primer_p1>
		<pcr_primer_p2>TGATAAGGTTATGAGCACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>721</pcr_amplicon_size>
		<canonical_amplicon>TGAACCTGGAAAATTCAAAAAATTGATTTTCAGGAAACCATGACAGAGCTCTGTCGAAAATTCAACGAGTTTAAACGTCCCAAAGGCTTCGAGGAGAAGCTGGAAAAAGTGCTCATAACCTTATCA</canonical_amplicon>
		<polymorphic_amplicon>TRAACCTGGAAAATTCAAAAAATTGATTTTCAGGAAACCATGACAGAGCTCTGTCGAAAATTCAACGAGTTTAAACGTCCCAAAGGCTTCGAGGAGAAGCTGGAAAAAGTGCTCATAACCTTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25509</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>97878</contig_pos>
        <strand>+</strand>
        <context>TGaaaaaaat[G/T]tttttttttt</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTATCAAAATATTTTCTAGTCAACAAAAAAGAATTTTTGCTGAAAAAAAT</left_flank>
        <right_flank>TTTTTTTTTTTTTGAAATTCCAGATGTTTAGTTCATCCAGAATTCTGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTCACTAGCTTTTCTTCTTTTTTCTTTCAGCTTCAGAAGTTTATACCAGATGACGTCACAGATGCTTCTATTCTGAATTTAAAAAAAAACCAAGAAGATAAAATCTCACCTTGTTTACGGTTTCCCAACCTTTACATGCTTACACCTTTCTTCTTTTTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCTTCTCCGTAAACCATGTGTATTCATAGAAATCCAGTTCTTCTTCTTCTTCTTCTTTTATCTTCTCCGAAACATCTCAAACGATTAAAGGGCATGTCGTTGGGCAAAAAAAAAACCGTGTGTTAAAATTTATTCGGGGGATAAGAAAAGGAGAAAGTGAGGAAAAAAAGAAGCAGCTGATTCTGATAAGTGATCTTTCTATTTGATAAATGATGGATCATACAAAATTTTAAGAGTACTATAAAAAGTTTCTTATCAAAATATTTTCTAGTCAACAAAAAAGAATTTTTGCTGAAAAAAATTTTTTTTTTTTTTTGAAATTCCAGATGTTTAGTTCATCCAGAATTCTGAATTCTGGAGGATGTGATGATTCAGAATTTGATTCATAATTAGAGAGTACAGAACATCGAGAGACGCAGAGAACAAATTGGAGGATGAGAAGATAAGAAAAGAATTTGTCATAATTGATAAGAAAATTTTGGGGAAAAATGCACAATTTTGCGAAATTCCGGGTAATTTTTGTTGACAAGAATTTCAAGGTACTGTAGGTCGTAGTATTGAAGACATTTCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAA</canonical>
            <polymorphic>TTTTTTCACTAGCTTTTCTTCTTTTTTCTTTCAGCTTCAGAAGTTTATACCAGATGACGTCACAGATGCTTCTATTCTGAATTTAAAAAAAAACCAAGAAGATAAAATCTCACCTTGTTTACGGTTTCCCAACCTTTACATGCTTACACCTTTCTTCTTTTTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCTTCTCCGTAAACCATGTGTATTCATAGAAATCCAGTTCTTCTTCTTCTTCTTCTTTTATCTTCTCCGAAACATCTCAAACGATTAAAGGGCATGTCGTTGGGCAAAAAAAAAACCGTGTGTTAAAATTTATTCGGGGGATAAGAAAAGGAGAAAGTGAGGAAAAAAAGAAGCAGCTGATTCTGATAAGTGATCTTTCTATTTGATAAATGATGGATCATACAAAATTTTAAGAGTACTATAAAAAGTTTCTTATCAAAATATTTTCTAGTCAACAAAAAAGAATTTTTGCTGAAAAAAATKTTTTTTTTTTTTTGAAATTCCAGATGTTTAGTTCATCCAGAATTCTGAATTCTGGAGGATGTGATGATTCAGAATTTGATTCATAATTAGAGAGTACAGAACATCGAGAGACGCAGAGAACAAATTGGAGGATGAGAAGATAAGAAAAGAATTTGTCATAATTGATAAGAAAATTTTGGGGAAAAATGCACAATTTTGCGAAATTCCGGGTAATTTTTGTTGACAAGAATTTCAAGGTACTGTAGGTCGTAGTATTGAAGACATTTCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>244 99 79 77 64 58 53 52 42 30 26 25 25 24 22 19 16 16 14 8 7</canonical_bands>
                <polymorphic_bands>244 99 79 77 64 58 53 52 42 35 30 26 25 25 24 22 16 14 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>244 99 79 58 53 52 42 38 37 27 27 25 25 24 20 19 16 16 16 12 12 10 10 10 8 7 7 7</canonical_bands>
                <polymorphic_bands>244 99 79 58 53 52 42 38 37 35 27 27 25 25 24 20 16 16 12 12 10 10 10 8 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATAAGAAAAGGAGAAAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>AATCAAATTCTGAATCATCACAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGATAAGAAAAGGAGAAAGTGAGGAAAAAAAGAAGCAGCTGATTCTGATAAGTGATCTTTCTATTTGATAAATGATGGATCATACAAAATTTTAAGAGTACTATAAAAAGTTTCTTATCAAAATATTTTCTAGTCAACAAAAAAGAATTTTTGCTGAAAAAAATTTTTTTTTTTTTTTGAAATTCCAGATGTTTAGTTCATCCAGAATTCTGAATTCTGGAGGATGTGATGATTCAGAATTTGATT</canonical_amplicon>
		<polymorphic_amplicon>GGATAAGAAAAGGAGAAAGTGAGGAAAAAAAGAAGCAGCTGATTCTGATAAGTGATCTTTCTATTTGATAAATGATGGATCATACAAAATTTTAAGAGTACTATAAAAAGTTTCTTATCAAAATATTTTCTAGTCAACAAAAAAGAATTTTTGCTGAAAAAAATKTTTTTTTTTTTTTGAAATTCCAGATGTTTAGTTCATCCAGAATTCTGAATTCTGGAGGATGTGATGATTCAGAATTTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25510</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>98111</contig_pos>
        <strand>+</strand>
        <context>ACAAGAATTT[A/T]AAGGTACTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATGCACAATTTTGCGAAATTCCGGGTAATTTTTGTTGACAAGAATTT</left_flank>
        <right_flank>AAGGTACTGTAGGTCGTAGTATTGAAGACATTTCGAAATTTCCAGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCTTCTTCTTCTTCTTCTTTTATCTTCTCCGAAACATCTCAAACGATTAAAGGGCATGTCGTTGGGCAAAAAAAAAACCGTGTGTTAAAATTTATTCGGGGGATAAGAAAAGGAGAAAGTGAGGAAAAAAAGAAGCAGCTGATTCTGATAAGTGATCTTTCTATTTGATAAATGATGGATCATACAAAATTTTAAGAGTACTATAAAAAGTTTCTTATCAAAATATTTTCTAGTCAACAAAAAAGAATTTTTGCTGAAAAAAATTTTTTTTTTTTTTTGAAATTCCAGATGTTTAGTTCATCCAGAATTCTGAATTCTGGAGGATGTGATGATTCAGAATTTGATTCATAATTAGAGAGTACAGAACATCGAGAGACGCAGAGAACAAATTGGAGGATGAGAAGATAAGAAAAGAATTTGTCATAATTGATAAGAAAATTTTGGGGAAAAATGCACAATTTTGCGAAATTCCGGGTAATTTTTGTTGACAAGAATTTCAAGGTACTGTAGGTCGTAGTATTGAAGACATTTCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAAGGCACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACAAACTCAAATTTCATTATTTCGAAAAATTTGGACCAGAAATATTTTGGAAAAAATCGAAAATTTTAAAAAATTGATTAACTAAACAGTCATAGAAAATCCTCACCAAAAGCTTTGATCAAAAAACGGATCCAAGTGGGCGGAGCCAATGAAAAGTATTCTCAAAATTCTCAGAAGTTCAAGTGTACTA</canonical>
            <polymorphic>GTTCTTCTTCTTCTTCTTCTTTTATCTTCTCCGAAACATCTCAAACGATTAAAGGGCATGTCGTTGGGCAAAAAAAAAACCGTGTGTTAAAATTTATTCGGGGGATAAGAAAAGGAGAAAGTGAGGAAAAAAAGAAGCAGCTGATTCTGATAAGTGATCTTTCTATTTGATAAATGATGGATCATACAAAATTTTAAGAGTACTATAAAAAGTTTCTTATCAAAATATTTTCTAGTCAACAAAAAAGAATTTTTGCTGAAAAAAATTTTTTTTTTTTTTTGAAATTCCAGATGTTTAGTTCATCCAGAATTCTGAATTCTGGAGGATGTGATGATTCAGAATTTGATTCATAATTAGAGAGTACAGAACATCGAGAGACGCAGAGAACAAATTGGAGGATGAGAAGATAAGAAAAGAATTTGTCATAATTGATAAGAAAATTTTGGGGAAAAATGCACAATTTTGCGAAATTCCGGGTAATTTTTGTTGACAAGAATTTWAAGGTACTGTAGGTCGTAGTATTGAAGACATTTCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAAGGCACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACAAACTCAAATTTCATTATTTCGAAAAATTTGGACCAGAAATATTTTGGAAAAAATCGAAAATTTTAAAAAATTGATTAACTAAACAGTCATAGAAAATCCTCACCAAAAGCTTTGATCAAAAAACGGATCCAAGTGGGCGGAGCCAATGAAAAGTATTCTCAAAATTCTCAGAAGTTCAAGTGTACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAGAAAATTTTGGGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGAGGATTTTCTATGACTGTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>484</pcr_amplicon_size>
		<canonical_amplicon>ATAAGAAAATTTTGGGGAAAAATGCACAATTTTGCGAAATTCCGGGTAATTTTTGTTGACAAGAATTTCAAGGTACTGTAGGTCGTAGTATTGAAGACATTTCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAAGGCACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACAAACTCAAATTTCATTATTTCGAAAAATTTGGACCAGAAATATTTTGGAAAAAATCGAAAATTTTAAAAAATTGATTAACTAAACAGTCATAGAAAATCCTCA</canonical_amplicon>
		<polymorphic_amplicon>ATAAGAAAATTTTGGGGAAAAATGCACAATTTTGCGAAATTCCGGGTAATTTTTGTTGACAAGAATTTWAAGGTACTGTAGGTCGTAGTATTGAAGACATTTCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAAGGCACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACAAACTCAAATTTCATTATTTCGAAAAATTTGGACCAGAAATATTTTGGAAAAAATCGAAAATTTTAAAAAATTGATTAACTAAACAGTCATAGAAAATCCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25511</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>98310</contig_pos>
        <strand></strand>
        <context>acctactttc[A/G]aaaatyttga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTC</left_flank>
        <right_flank>AAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACTATAAAAAGTTTCTTATCAAAATATTTTCTAGTCAACAAAAAAGAATTTTTGCTGAAAAAAATTTTTTTTTTTTTTTGAAATTCCAGATGTTTAGTTCATCCAGAATTCTGAATTCTGGAGGATGTGATGATTCAGAATTTGATTCATAATTAGAGAGTACAGAACATCGAGAGACGCAGAGAACAAATTGGAGGATGAGAAGATAAGAAAAGAATTTGTCATAATTGATAAGAAAATTTTGGGGAAAAATGCACAATTTTGCGAAATTCCGGGTAATTTTTGTTGACAAGAATTTCAAGGTACTGTAGGTCGTAGTATTGAAGACATTTCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAAGGCACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACAAACTCAAATTTCATTATTTCGAAAAATTTGGACCAGAAATATTTTGGAAAAAATCGAAAATTTTAAAAAATTGATTAACTAAACAGTCATAGAAAATCCTCACCAAAAGCTTTGATCAAAAAACGGATCCAAGTGGGCGGAGCCAATGAAAAGTATTCTCAAAATTCTCAGAAGTTCAAGTGTACTAACTGTATGCAATACTAAATAATTTCAAACAATTTGGTTTTTTGTGCACATGAAAACGGGTCGATGCTCGAAACCTACAGAGAATGTGTGTTAAGTGGTTTATTGAAAAAATAAAGAGTTAAAAAAATAAAATCAATGGTCATCAACACTTGCATCACAATAGTTATCAGTATCACAGGTAGAGGTTTCACAAACATAAT</canonical>
            <polymorphic>GTACTATAAAAAGTTTCTTATCAAAATATTTTCTAGTCAACAAAAAAGAATTTTTGCTGAAAAAAATTTTTTTTTTTTTTTGAAATTCCAGATGTTTAGTTCATCCAGAATTCTGAATTCTGGAGGATGTGATGATTCAGAATTTGATTCATAATTAGAGAGTACAGAACATCGAGAGACGCAGAGAACAAATTGGAGGATGAGAAGATAAGAAAAGAATTTGTCATAATTGATAAGAAAATTTTGGGGAAAAATGCACAATTTTGCGAAATTCCGGGTAATTTTTGTTGACAAGAATTTCAAGGTACTGTAGGTCGTAGTATTGAAGACATTTCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCRAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAAGGCACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACAAACTCAAATTTCATTATTTCGAAAAATTTGGACCAGAAATATTTTGGAAAAAATCGAAAATTTTAAAAAATTGATTAACTAAACAGTCATAGAAAATCCTCACCAAAAGCTTTGATCAAAAAACGGATCCAAGTGGGCGGAGCCAATGAAAAGTATTCTCAAAATTCTCAGAAGTTCAAGTGTACTAACTGTATGCAATACTAAATAATTTCAAACAATTTGGTTTTTTGTGCACATGAAAACGGGTCGATGCTCGAAACCTACAGAGAATGTGTGTTAAGTGGTTTATTGAAAAAATAAAGAGTTAAAAAAATAAAATCAATGGTCATCAACACTTGCATCACAATAGTTATCAGTATCACAGGTAGAGGTTTCACAAACATAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGAAATTTCCAGAAAAATAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGAGGATTTTCTATGACTGTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>383</pcr_amplicon_size>
		<canonical_amplicon>TCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAAGGCACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACAAACTCAAATTTCATTATTTCGAAAAATTTGGACCAGAAATATTTTGGAAAAAATCGAAAATTTTAAAAAATTGATTAACTAAACAGTCATAGAAAATCCTCA</canonical_amplicon>
		<polymorphic_amplicon>TCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCRAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAAGGCACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACAAACTCAAATTTCATTATTTCGAAAAATTTGGACCAGAAATATTTTGGAAAAAATCGAAAATTTTAAAAAATTGATTAACTAAACAGTCATAGAAAATCCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25512</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>98316</contig_pos>
        <strand></strand>
        <context>tttcraaaat[T/C]ttgaaacttc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAAT</left_flank>
        <right_flank>TTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAAAGTTTCTTATCAAAATATTTTCTAGTCAACAAAAAAGAATTTTTGCTGAAAAAAATTTTTTTTTTTTTTTGAAATTCCAGATGTTTAGTTCATCCAGAATTCTGAATTCTGGAGGATGTGATGATTCAGAATTTGATTCATAATTAGAGAGTACAGAACATCGAGAGACGCAGAGAACAAATTGGAGGATGAGAAGATAAGAAAAGAATTTGTCATAATTGATAAGAAAATTTTGGGGAAAAATGCACAATTTTGCGAAATTCCGGGTAATTTTTGTTGACAAGAATTTCAAGGTACTGTAGGTCGTAGTATTGAAGACATTTCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAAGGCACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACAAACTCAAATTTCATTATTTCGAAAAATTTGGACCAGAAATATTTTGGAAAAAATCGAAAATTTTAAAAAATTGATTAACTAAACAGTCATAGAAAATCCTCACCAAAAGCTTTGATCAAAAAACGGATCCAAGTGGGCGGAGCCAATGAAAAGTATTCTCAAAATTCTCAGAAGTTCAAGTGTACTAACTGTATGCAATACTAAATAATTTCAAACAATTTGGTTTTTTGTGCACATGAAAACGGGTCGATGCTCGAAACCTACAGAGAATGTGTGTTAAGTGGTTTATTGAAAAAATAAAGAGTTAAAAAAATAAAATCAATGGTCATCAACACTTGCATCACAATAGTTATCAGTATCACAGGTAGAGGTTTCACAAACATAATTGGATG</canonical>
            <polymorphic>TAAAAAGTTTCTTATCAAAATATTTTCTAGTCAACAAAAAAGAATTTTTGCTGAAAAAAATTTTTTTTTTTTTTTGAAATTCCAGATGTTTAGTTCATCCAGAATTCTGAATTCTGGAGGATGTGATGATTCAGAATTTGATTCATAATTAGAGAGTACAGAACATCGAGAGACGCAGAGAACAAATTGGAGGATGAGAAGATAAGAAAAGAATTTGTCATAATTGATAAGAAAATTTTGGGGAAAAATGCACAATTTTGCGAAATTCCGGGTAATTTTTGTTGACAAGAATTTCAAGGTACTGTAGGTCGTAGTATTGAAGACATTTCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATYTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAAGGCACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACAAACTCAAATTTCATTATTTCGAAAAATTTGGACCAGAAATATTTTGGAAAAAATCGAAAATTTTAAAAAATTGATTAACTAAACAGTCATAGAAAATCCTCACCAAAAGCTTTGATCAAAAAACGGATCCAAGTGGGCGGAGCCAATGAAAAGTATTCTCAAAATTCTCAGAAGTTCAAGTGTACTAACTGTATGCAATACTAAATAATTTCAAACAATTTGGTTTTTTGTGCACATGAAAACGGGTCGATGCTCGAAACCTACAGAGAATGTGTGTTAAGTGGTTTATTGAAAAAATAAAGAGTTAAAAAAATAAAATCAATGGTCATCAACACTTGCATCACAATAGTTATCAGTATCACAGGTAGAGGTTTCACAAACATAATTGGATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>230 104 77 66 64 53 52 42 42 34 30 26 25 25 24 22 19 18 16 16 8 7</canonical_bands>
                <polymorphic_bands>230 105 104 77 66 64 42 42 34 30 26 25 25 24 22 19 18 16 16 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>167 94 59 53 52 44 42 42 38 37 34 27 27 25 25 24 20 19 18 16 16 16 12 12 10 10 10 10 10 9 8 7 7</canonical_bands>
                <polymorphic_bands>167 105 94 59 44 42 42 38 37 34 27 27 25 25 24 20 19 18 16 16 16 12 12 10 10 10 10 10 9 8 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGAAATTTCCAGAAAAATAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGAGGATTTTCTATGACTGTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>383</pcr_amplicon_size>
		<canonical_amplicon>TCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAAGGCACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACAAACTCAAATTTCATTATTTCGAAAAATTTGGACCAGAAATATTTTGGAAAAAATCGAAAATTTTAAAAAATTGATTAACTAAACAGTCATAGAAAATCCTCA</canonical_amplicon>
		<polymorphic_amplicon>TCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATYTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAAGGCACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACAAACTCAAATTTCATTATTTCGAAAAATTTGGACCAGAAATATTTTGGAAAAAATCGAAAATTTTAAAAAATTGATTAACTAAACAGTCATAGAAAATCCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25513</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>98370</contig_pos>
        <strand></strand>
        <context>ccgaaaattc[C/G]gaattgragg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTC</left_flank>
        <right_flank>GAATTGAAGGCACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACAC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAATTTTTTTTTTTTTTTGAAATTCCAGATGTTTAGTTCATCCAGAATTCTGAATTCTGGAGGATGTGATGATTCAGAATTTGATTCATAATTAGAGAGTACAGAACATCGAGAGACGCAGAGAACAAATTGGAGGATGAGAAGATAAGAAAAGAATTTGTCATAATTGATAAGAAAATTTTGGGGAAAAATGCACAATTTTGCGAAATTCCGGGTAATTTTTGTTGACAAGAATTTCAAGGTACTGTAGGTCGTAGTATTGAAGACATTTCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAAGGCACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACAAACTCAAATTTCATTATTTCGAAAAATTTGGACCAGAAATATTTTGGAAAAAATCGAAAATTTTAAAAAATTGATTAACTAAACAGTCATAGAAAATCCTCACCAAAAGCTTTGATCAAAAAACGGATCCAAGTGGGCGGAGCCAATGAAAAGTATTCTCAAAATTCTCAGAAGTTCAAGTGTACTAACTGTATGCAATACTAAATAATTTCAAACAATTTGGTTTTTTGTGCACATGAAAACGGGTCGATGCTCGAAACCTACAGAGAATGTGTGTTAAGTGGTTTATTGAAAAAATAAAGAGTTAAAAAAATAAAATCAATGGTCATCAACACTTGCATCACAATAGTTATCAGTATCACAGGTAGAGGTTTCACAAACATAATTGGATGGGAACCTCGGGTCCACATTCTTCCATTCCATCCATTTTCCAGAATTTTCAAAGT</canonical>
            <polymorphic>AAAAAATTTTTTTTTTTTTTTGAAATTCCAGATGTTTAGTTCATCCAGAATTCTGAATTCTGGAGGATGTGATGATTCAGAATTTGATTCATAATTAGAGAGTACAGAACATCGAGAGACGCAGAGAACAAATTGGAGGATGAGAAGATAAGAAAAGAATTTGTCATAATTGATAAGAAAATTTTGGGGAAAAATGCACAATTTTGCGAAATTCCGGGTAATTTTTGTTGACAAGAATTTCAAGGTACTGTAGGTCGTAGTATTGAAGACATTTCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCSGAATTGAAGGCACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACAAACTCAAATTTCATTATTTCGAAAAATTTGGACCAGAAATATTTTGGAAAAAATCGAAAATTTTAAAAAATTGATTAACTAAACAGTCATAGAAAATCCTCACCAAAAGCTTTGATCAAAAAACGGATCCAAGTGGGCGGAGCCAATGAAAAGTATTCTCAAAATTCTCAGAAGTTCAAGTGTACTAACTGTATGCAATACTAAATAATTTCAAACAATTTGGTTTTTTGTGCACATGAAAACGGGTCGATGCTCGAAACCTACAGAGAATGTGTGTTAAGTGGTTTATTGAAAAAATAAAGAGTTAAAAAAATAAAATCAATGGTCATCAACACTTGCATCACAATAGTTATCAGTATCACAGGTAGAGGTTTCACAAACATAATTGGATGGGAACCTCGGGTCCACATTCTTCCATTCCATCCATTTTCCAGAATTTTCAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGAAATTTCCAGAAAAATAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGAGGATTTTCTATGACTGTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>383</pcr_amplicon_size>
		<canonical_amplicon>TCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAAGGCACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACAAACTCAAATTTCATTATTTCGAAAAATTTGGACCAGAAATATTTTGGAAAAAATCGAAAATTTTAAAAAATTGATTAACTAAACAGTCATAGAAAATCCTCA</canonical_amplicon>
		<polymorphic_amplicon>TCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCSGAATTGAAGGCACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACAAACTCAAATTTCATTATTTCGAAAAATTTGGACCAGAAATATTTTGGAAAAAATCGAAAATTTTAAAAAATTGATTAACTAAACAGTCATAGAAAATCCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25514</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>98377</contig_pos>
        <strand></strand>
        <context>ttcsgaattg[A/G]aggmacctag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTG</left_flank>
        <right_flank>AGGCACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACAAAC</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTTTTTTTTGAAATTCCAGATGTTTAGTTCATCCAGAATTCTGAATTCTGGAGGATGTGATGATTCAGAATTTGATTCATAATTAGAGAGTACAGAACATCGAGAGACGCAGAGAACAAATTGGAGGATGAGAAGATAAGAAAAGAATTTGTCATAATTGATAAGAAAATTTTGGGGAAAAATGCACAATTTTGCGAAATTCCGGGTAATTTTTGTTGACAAGAATTTCAAGGTACTGTAGGTCGTAGTATTGAAGACATTTCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAAGGCACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACAAACTCAAATTTCATTATTTCGAAAAATTTGGACCAGAAATATTTTGGAAAAAATCGAAAATTTTAAAAAATTGATTAACTAAACAGTCATAGAAAATCCTCACCAAAAGCTTTGATCAAAAAACGGATCCAAGTGGGCGGAGCCAATGAAAAGTATTCTCAAAATTCTCAGAAGTTCAAGTGTACTAACTGTATGCAATACTAAATAATTTCAAACAATTTGGTTTTTTGTGCACATGAAAACGGGTCGATGCTCGAAACCTACAGAGAATGTGTGTTAAGTGGTTTATTGAAAAAATAAAGAGTTAAAAAAATAAAATCAATGGTCATCAACACTTGCATCACAATAGTTATCAGTATCACAGGTAGAGGTTTCACAAACATAATTGGATGGGAACCTCGGGTCCACATTCTTCCATTCCATCCATTTTCCAGAATTTTCAAAGTTCATCCC</canonical>
            <polymorphic>TTTTTTTTTTTTTTGAAATTCCAGATGTTTAGTTCATCCAGAATTCTGAATTCTGGAGGATGTGATGATTCAGAATTTGATTCATAATTAGAGAGTACAGAACATCGAGAGACGCAGAGAACAAATTGGAGGATGAGAAGATAAGAAAAGAATTTGTCATAATTGATAAGAAAATTTTGGGGAAAAATGCACAATTTTGCGAAATTCCGGGTAATTTTTGTTGACAAGAATTTCAAGGTACTGTAGGTCGTAGTATTGAAGACATTTCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGRAGGCACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACAAACTCAAATTTCATTATTTCGAAAAATTTGGACCAGAAATATTTTGGAAAAAATCGAAAATTTTAAAAAATTGATTAACTAAACAGTCATAGAAAATCCTCACCAAAAGCTTTGATCAAAAAACGGATCCAAGTGGGCGGAGCCAATGAAAAGTATTCTCAAAATTCTCAGAAGTTCAAGTGTACTAACTGTATGCAATACTAAATAATTTCAAACAATTTGGTTTTTTGTGCACATGAAAACGGGTCGATGCTCGAAACCTACAGAGAATGTGTGTTAAGTGGTTTATTGAAAAAATAAAGAGTTAAAAAAATAAAATCAATGGTCATCAACACTTGCATCACAATAGTTATCAGTATCACAGGTAGAGGTTTCACAAACATAATTGGATGGGAACCTCGGGTCCACATTCTTCCATTCCATCCATTTTCCAGAATTTTCAAAGTTCATCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGAAATTTCCAGAAAAATAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGAGGATTTTCTATGACTGTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>383</pcr_amplicon_size>
		<canonical_amplicon>TCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAAGGCACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACAAACTCAAATTTCATTATTTCGAAAAATTTGGACCAGAAATATTTTGGAAAAAATCGAAAATTTTAAAAAATTGATTAACTAAACAGTCATAGAAAATCCTCA</canonical_amplicon>
		<polymorphic_amplicon>TCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGRAGGCACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACAAACTCAAATTTCATTATTTCGAAAAATTTGGACCAGAAATATTTTGGAAAAAATCGAAAATTTTAAAAAATTGATTAACTAAACAGTCATAGAAAATCCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25515</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>98381</contig_pos>
        <strand></strand>
        <context>gaattgragg[C/A]acctaggcgt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAAGG</left_flank>
        <right_flank>ACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACAAACTCAA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTTTTTGAAATTCCAGATGTTTAGTTCATCCAGAATTCTGAATTCTGGAGGATGTGATGATTCAGAATTTGATTCATAATTAGAGAGTACAGAACATCGAGAGACGCAGAGAACAAATTGGAGGATGAGAAGATAAGAAAAGAATTTGTCATAATTGATAAGAAAATTTTGGGGAAAAATGCACAATTTTGCGAAATTCCGGGTAATTTTTGTTGACAAGAATTTCAAGGTACTGTAGGTCGTAGTATTGAAGACATTTCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAAGGCACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACAAACTCAAATTTCATTATTTCGAAAAATTTGGACCAGAAATATTTTGGAAAAAATCGAAAATTTTAAAAAATTGATTAACTAAACAGTCATAGAAAATCCTCACCAAAAGCTTTGATCAAAAAACGGATCCAAGTGGGCGGAGCCAATGAAAAGTATTCTCAAAATTCTCAGAAGTTCAAGTGTACTAACTGTATGCAATACTAAATAATTTCAAACAATTTGGTTTTTTGTGCACATGAAAACGGGTCGATGCTCGAAACCTACAGAGAATGTGTGTTAAGTGGTTTATTGAAAAAATAAAGAGTTAAAAAAATAAAATCAATGGTCATCAACACTTGCATCACAATAGTTATCAGTATCACAGGTAGAGGTTTCACAAACATAATTGGATGGGAACCTCGGGTCCACATTCTTCCATTCCATCCATTTTCCAGAATTTTCAAAGTTCATCCCAACC</canonical>
            <polymorphic>TTTTTTTTTTGAAATTCCAGATGTTTAGTTCATCCAGAATTCTGAATTCTGGAGGATGTGATGATTCAGAATTTGATTCATAATTAGAGAGTACAGAACATCGAGAGACGCAGAGAACAAATTGGAGGATGAGAAGATAAGAAAAGAATTTGTCATAATTGATAAGAAAATTTTGGGGAAAAATGCACAATTTTGCGAAATTCCGGGTAATTTTTGTTGACAAGAATTTCAAGGTACTGTAGGTCGTAGTATTGAAGACATTTCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAAGGMACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACAAACTCAAATTTCATTATTTCGAAAAATTTGGACCAGAAATATTTTGGAAAAAATCGAAAATTTTAAAAAATTGATTAACTAAACAGTCATAGAAAATCCTCACCAAAAGCTTTGATCAAAAAACGGATCCAAGTGGGCGGAGCCAATGAAAAGTATTCTCAAAATTCTCAGAAGTTCAAGTGTACTAACTGTATGCAATACTAAATAATTTCAAACAATTTGGTTTTTTGTGCACATGAAAACGGGTCGATGCTCGAAACCTACAGAGAATGTGTGTTAAGTGGTTTATTGAAAAAATAAAGAGTTAAAAAAATAAAATCAATGGTCATCAACACTTGCATCACAATAGTTATCAGTATCACAGGTAGAGGTTTCACAAACATAATTGGATGGGAACCTCGGGTCCACATTCTTCCATTCCATCCATTTTCCAGAATTTTCAAAGTTCATCCCAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>202 127 112 107 60 51 50 50 47 40 33 31 25 18 15 10 9 7 2 2 2</canonical_bands>
                <polymorphic_bands>202 127 122 107 60 51 50 50 47 40 33 31 25 18 15 9 7 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGAAATTTCCAGAAAAATAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGAGGATTTTCTATGACTGTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>383</pcr_amplicon_size>
		<canonical_amplicon>TCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAAGGCACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACAAACTCAAATTTCATTATTTCGAAAAATTTGGACCAGAAATATTTTGGAAAAAATCGAAAATTTTAAAAAATTGATTAACTAAACAGTCATAGAAAATCCTCA</canonical_amplicon>
		<polymorphic_amplicon>TCGAAATTTCCAGAAAAATAAATTTAAAAATTCTAAAAACTTTTTTTCAAAGGAAAATTAGAAACTACCGTATCCCTTTTGCTGTTGCTTAAAATTTGTTGAAACTAACATTTTCGAATTTCTCGTGTTTAGATCTTTAAAATGAGTATAATCATGACCTACTTTCAAAAATTTTGAAACTTCTGAATATTTTTGGACCCCTATGCGCCTTTAAACCCGAAAATTCCGAATTGAAGGMACCTAGGCGTGTGGGGTATCATTTTAAAGTATGAAACACGACAAACTCAAATTTCATTATTTCGAAAAATTTGGACCAGAAATATTTTGGAAAAAATCGAAAATTTTAAAAAATTGATTAACTAAACAGTCATAGAAAATCCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25516</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>131850</contig_pos>
        <strand>+</strand>
        <context>GCCGCATAAG[A/T]GCTCGCAGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGAATTGTAGCTAGCAGCTGCGGCGGCAGCGGCCGCCGCTGCCGCATAAG</left_flank>
        <right_flank>GCTCGCAGCATCTCCCTGAGCCGTAGAAGTCGCTGGAGCAGTCTGATTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGCAAATTTCGAGCCAATATCGAACTTTAATGGTTAAAACTAAAGAAGTTTTATTCAAGATCGAAAATTGGCAATTTCGAAATTATTGGATTTTTTGAAAACTCTGAGAATTTGTCTCTTTTTTTGATTTTCCCTAACTAGGAATAAATCAAGCACAAAATTTGCGACATTTTGATACCTATATTGCCAGGTTTCGGCAATTCTTGGGTTTTGCCCCAGGCTGGCCCAATGGTTGGGCAAAGGTTGGGCAAAAAATAAAAACCGCCACAAGTTGGCAATATGGGCATCAAAATCTTGCAAATTCAGAGCTGAATTCAAATTTCGACATAAAAAACTGAAAAAAAAACAGATCCAAAAATGTTTTGGAATTTTCCCGAAAATGTGTTTATCTAGTTGGGAAAATATGCCCCAAACTCACTATGCTGACTCTCAATCCCGGAAATAAGCGAATTGTAGCTAGCAGCTGCGGCGGCAGCGGCCGCCGCTGCCGCATAAGAGCTCGCAGCATCTCCCTGAGCCGTAGAAGTCGCTGGAGCAGTCTGATTGACTCCTGAATGCACCTGTTGGTGTCCAGCAGCTGTATGCTGTGCGTGGGCGGCCACTGCGGCCTGTTGGGCCTGTTGGGCGGCCTGTTGTTGGGCCAACGCTTGTGCGGCCAAGGCGTAATGGGGATTTTGGGAAACTGCTGCTGCGGACTGGAGTCCTTGGATCTGGGCGGCGAGTTGGGGTTGTTGTTGGGGCATGACCGGTGTAGCTGCGGCGGCTGCAGCCGCTGCTTGGAATTGCAGCATTTGGAGGGGGTCCTGAAAATTGGCAAGAGTTTGGATCAAAACTGAATATGTTACTGTAGTTTAAAGGCGCGTACTCTTCAAAAGTTAACTTTGAAACCTTGGGATTTTAAAGGCGCATACACCGCATTTTTGAAGGTTTTCCACCTACCGTAGCCGTATGTTGTTGCTGTAGCAATGGCAGATATGCAACACTAGCAGCAGATGTC</canonical>
            <polymorphic>TTTTGCAAATTTCGAGCCAATATCGAACTTTAATGGTTAAAACTAAAGAAGTTTTATTCAAGATCGAAAATTGGCAATTTCGAAATTATTGGATTTTTTGAAAACTCTGAGAATTTGTCTCTTTTTTTGATTTTCCCTAACTAGGAATAAATCAAGCACAAAATTTGCGACATTTTGATACCTATATTGCCAGGTTTCGGCAATTCTTGGGTTTTGCCCCAGGCTGGCCCAATGGTTGGGCAAAGGTTGGGCAAAAAATAAAAACCGCCACAAGTTGGCAATATGGGCATCAAAATCTTGCAAATTCAGAGCTGAATTCAAATTTCGACATAAAAAACTGAAAAAAAAACAGATCCAAAAATGTTTTGGAATTTTCCCGAAAATGTGTTTATCTAGTTGGGAAAATATGCCCCAAACTCACTATGCTGACTCTCAATCCCGGAAATAAGCGAATTGTAGCTAGCAGCTGCGGCGGCAGCGGCCGCCGCTGCCGCATAAGWGCTCGCAGCATCTCCCTGAGCCGTAGAAGTCGCTGGAGCAGTCTGATTGACTCCTGAATGCACCTGTTGGTGTCCAGCAGCTGTATGCTGTGCGTGGGCGGCCACTGCGGCCTGTTGGGCCTGTTGGGCGGCCTGTTGTTGGGCCAACGCTTGTGCGGCCAAGGCGTAATGGGGATTTTGGGAAACTGCTGCTGCGGACTGGAGTCCTTGGATCTGGGCGGCGAGTTGGGGTTGTTGTTGGGGCATGACCGGTGTAGCTGCGGCGGCTGCAGCCGCTGCTTGGAATTGCAGCATTTGGAGGGGGTCCTGAAAATTGGCAAGAGTTTGGATCAAAACTGAATATGTTACTGTAGTTTAAAGGCGCGTACTCTTCAAAAGTTAACTTTGAAACCTTGGGATTTTAAAGGCGCATACACCGCATTTTTGAAGGTTTTCCACCTACCGTAGCCGTATGTTGTTGCTGTAGCAATGGCAGATATGCAACACTAGCAGCAGATGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>311 243 177 148 79 35 7</canonical_bands>
                <polymorphic_bands>311 243 177 148 114 7</polymorphic_bands>
            </assay>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>207 175 148 99 84 60 53 21 20 19 16 15 15 12 12 9 9 9 7 6 4</canonical_bands>
                <polymorphic_bands>207 175 148 99 84 60 53 39 21 16 15 15 12 12 9 9 9 7 6 4</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAATCTTGCAAATTCAGAG</pcr_primer_p1>
		<pcr_primer_p2>GCATTCAGGAGTCAATCAGA</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>CAAAATCTTGCAAATTCAGAGCTGAATTCAAATTTCGACATAAAAAACTGAAAAAAAAACAGATCCAAAAATGTTTTGGAATTTTCCCGAAAATGTGTTTATCTAGTTGGGAAAATATGCCCCAAACTCACTATGCTGACTCTCAATCCCGGAAATAAGCGAATTGTAGCTAGCAGCTGCGGCGGCAGCGGCCGCCGCTGCCGCATAAGAGCTCGCAGCATCTCCCTGAGCCGTAGAAGTCGCTGGAGCAGTCTGATTGACTCCTGAATGC</canonical_amplicon>
		<polymorphic_amplicon>CAAAATCTTGCAAATTCAGAGCTGAATTCAAATTTCGACATAAAAAACTGAAAAAAAAACAGATCCAAAAATGTTTTGGAATTTTCCCGAAAATGTGTTTATCTAGTTGGGAAAATATGCCCCAAACTCACTATGCTGACTCTCAATCCCGGAAATAAGCGAATTGTAGCTAGCAGCTGCGGCGGCAGCGGCCGCCGCTGCCGCATAAGWGCTCGCAGCATCTCCCTGAGCCGTAGAAGTCGCTGGAGCAGTCTGATTGACTCCTGAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25517</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>133635</contig_pos>
        <strand></strand>
        <context>ttcaacagtg[T/C]tttcagattt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCCATGAGTTATATCTTTCGATTTCTCATGTTCTCCTGAGTTCAACAGTG</left_flank>
        <right_flank>TTTCAGATTTCAAAAAATATCAATTTTGAGTCAAGTTACACCATGGTGGC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTGCAGGAAGTAGGCTATACATATCCTAGGGATATTTCTGCGGTCCCAAGTTTCCGGACCCCCTTCTCCCCAGGGATTATGTCGAAAACATTATAAAAATGGGAGCCAGACTTGCCCTGGGCATTTCTCTCGAAAATTTCTAAAAACGCTACAACTACCGTACCTCATCCAACTCTCCAAACGCGGCAAAAAGCGTGCGAACGTCGTCTTCGGACTGTTGTTTTGATAGCATCCCGATGAACAACTTCTTATCATCCATTTTATCTTTGGGACTTGCCGGACGGCTGTCTGTGTCGGCTGGTTTCACTTGCATCGCTCGGTTCATCTGGAAAATTGATAATTTAGAATTTTTGGGAATTCATCTCAATTTGAAAAATTCCAAAAATATCAATTTTGAGCCAAGTTGCACGGGGGTGGCCTAGAAAACCAAATTTTGAAAAGGCTAGGCCATGAGTTATATCTTTCGATTTCTCATGTTCTCCTGAGTTCAACAGTGTTTTCAGATTTCAAAAAATATCAATTTTGAGTCAAGTTACACCATGGTGGCCTAGGAACCCAAAACTAGGCCGGGAATTCAAAAAACTAACTTGGCTCAAAATTGGTATTTTTGAATTCTGATTTTAGTTTTGAAATTTACTCATTGAGAACTTCAAAATGAGTATAAACATGACTAGATTCTGGGCAAGTTGAAATTCTGGGGTAGTCGCCTAGAAACCCAAAACTAGGCCACATCTTCCAATGATTGTAACTTGGCTCAAATTTGATATTTTTGCATTTTCTTTCCAGTTTTGTGTTTGACTTATCAAGTGCTTCAAAATAAGTATAATCATGCCCTACTTTCGAGAAATCCGGTTTTTAACAATTTTTGCGAGGTTTTTTGAGAGGTCTGCTTCTTTAAACTACCGTAACTCACTCAGTTTCGCTTCAAGCTTTTCAAAAACTAGGTTTATGGAATCAGTTTGTTATGAGCTTCAAAATGAGTATAATCATGGGTAGA</canonical>
            <polymorphic>AAATTGCAGGAAGTAGGCTATACATATCCTAGGGATATTTCTGCGGTCCCAAGTTTCCGGACCCCCTTCTCCCCAGGGATTATGTCGAAAACATTATAAAAATGGGAGCCAGACTTGCCCTGGGCATTTCTCTCGAAAATTTCTAAAAACGCTACAACTACCGTACCTCATCCAACTCTCCAAACGCGGCAAAAAGCGTGCGAACGTCGTCTTCGGACTGTTGTTTTGATAGCATCCCGATGAACAACTTCTTATCATCCATTTTATCTTTGGGACTTGCCGGACGGCTGTCTGTGTCGGCTGGTTTCACTTGCATCGCTCGGTTCATCTGGAAAATTGATAATTTAGAATTTTTGGGAATTCATCTCAATTTGAAAAATTCCAAAAATATCAATTTTGAGCCAAGTTGCACGGGGGTGGCCTAGAAAACCAAATTTTGAAAAGGCTAGGCCATGAGTTATATCTTTCGATTTCTCATGTTCTCCTGAGTTCAACAGTGYTTTCAGATTTCAAAAAATATCAATTTTGAGTCAAGTTACACCATGGTGGCCTAGGAACCCAAAACTAGGCCGGGAATTCAAAAAACTAACTTGGCTCAAAATTGGTATTTTTGAATTCTGATTTTAGTTTTGAAATTTACTCATTGAGAACTTCAAAATGAGTATAAACATGACTAGATTCTGGGCAAGTTGAAATTCTGGGGTAGTCGCCTAGAAACCCAAAACTAGGCCACATCTTCCAATGATTGTAACTTGGCTCAAATTTGATATTTTTGCATTTTCTTTCCAGTTTTGTGTTTGACTTATCAAGTGCTTCAAAATAAGTATAATCATGCCCTACTTTCGAGAAATCCGGTTTTTAACAATTTTTGCGAGGTTTTTTGAGAGGTCTGCTTCTTTAAACTACCGTAACTCACTCAGTTTCGCTTCAAGCTTTTCAAAAACTAGGTTTATGGAATCAGTTTGTTATGAGCTTCAAAATGAGTATAATCATGGGTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTTTTGGGAATTCATCTC</pcr_primer_p1>
		<pcr_primer_p2>GAGCCATTTTAAGCTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>871</pcr_amplicon_size>
		<canonical_amplicon>GAATTTTTGGGAATTCATCTCAATTTGAAAAATTCCAAAAATATCAATTTTGAGCCAAGTTGCACGGGGGTGGCCTAGAAAACCAAATTTTGAAAAGGCTAGGCCATGAGTTATATCTTTCGATTTCTCATGTTCTCCTGAGTTCAACAGTGTTTTCAGATTTCAAAAAATA</canonical_amplicon>
		<polymorphic_amplicon>GAATTTTTGGGAATTCATCTCAATTTGAAAAATTCCAAAAATATCAATTTTGAGCCAAGTTGCACGGGGGTGGCCTAGAAAACCAAATTTTGAAAAGGCTAGGCCATGAGTTATATCTTTCGATTTCTCATGTTCTCCTGAGTTCAACAGTGYTTTCAGATTTCAAAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25518</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>133747</contig_pos>
        <strand></strand>
        <context>ttggtatttt[T/C]gaattctgwT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAACTAGGCCGGGAATTCAAAAAACTAACTTGGCTCAAAATTGGTATTTT</left_flank>
        <right_flank>GAATTCTGATTTTAGTTTTGAAATTTACTCATTGAGAACTTCAAAATGAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTGCCCTGGGCATTTCTCTCGAAAATTTCTAAAAACGCTACAACTACCGTACCTCATCCAACTCTCCAAACGCGGCAAAAAGCGTGCGAACGTCGTCTTCGGACTGTTGTTTTGATAGCATCCCGATGAACAACTTCTTATCATCCATTTTATCTTTGGGACTTGCCGGACGGCTGTCTGTGTCGGCTGGTTTCACTTGCATCGCTCGGTTCATCTGGAAAATTGATAATTTAGAATTTTTGGGAATTCATCTCAATTTGAAAAATTCCAAAAATATCAATTTTGAGCCAAGTTGCACGGGGGTGGCCTAGAAAACCAAATTTTGAAAAGGCTAGGCCATGAGTTATATCTTTCGATTTCTCATGTTCTCCTGAGTTCAACAGTGTTTTCAGATTTCAAAAAATATCAATTTTGAGTCAAGTTACACCATGGTGGCCTAGGAACCCAAAACTAGGCCGGGAATTCAAAAAACTAACTTGGCTCAAAATTGGTATTTTTGAATTCTGATTTTAGTTTTGAAATTTACTCATTGAGAACTTCAAAATGAGTATAAACATGACTAGATTCTGGGCAAGTTGAAATTCTGGGGTAGTCGCCTAGAAACCCAAAACTAGGCCACATCTTCCAATGATTGTAACTTGGCTCAAATTTGATATTTTTGCATTTTCTTTCCAGTTTTGTGTTTGACTTATCAAGTGCTTCAAAATAAGTATAATCATGCCCTACTTTCGAGAAATCCGGTTTTTAACAATTTTTGCGAGGTTTTTTGAGAGGTCTGCTTCTTTAAACTACCGTAACTCACTCAGTTTCGCTTCAAGCTTTTCAAAAACTAGGTTTATGGAATCAGTTTGTTATGAGCTTCAAAATGAGTATAATCATGGGTAGATTCTGAGAAAATTGATTTTTGCCCTGGACCCATGCGCCTTTAAAGTCGAAAATTGAAGTTCTTAGAAACATGTCGTGTTTATACTCATTTTGAAGCTTATAAGCTCGTGAGT</canonical>
            <polymorphic>ACTTGCCCTGGGCATTTCTCTCGAAAATTTCTAAAAACGCTACAACTACCGTACCTCATCCAACTCTCCAAACGCGGCAAAAAGCGTGCGAACGTCGTCTTCGGACTGTTGTTTTGATAGCATCCCGATGAACAACTTCTTATCATCCATTTTATCTTTGGGACTTGCCGGACGGCTGTCTGTGTCGGCTGGTTTCACTTGCATCGCTCGGTTCATCTGGAAAATTGATAATTTAGAATTTTTGGGAATTCATCTCAATTTGAAAAATTCCAAAAATATCAATTTTGAGCCAAGTTGCACGGGGGTGGCCTAGAAAACCAAATTTTGAAAAGGCTAGGCCATGAGTTATATCTTTCGATTTCTCATGTTCTCCTGAGTTCAACAGTGTTTTCAGATTTCAAAAAATATCAATTTTGAGTCAAGTTACACCATGGTGGCCTAGGAACCCAAAACTAGGCCGGGAATTCAAAAAACTAACTTGGCTCAAAATTGGTATTTTYGAATTCTGATTTTAGTTTTGAAATTTACTCATTGAGAACTTCAAAATGAGTATAAACATGACTAGATTCTGGGCAAGTTGAAATTCTGGGGTAGTCGCCTAGAAACCCAAAACTAGGCCACATCTTCCAATGATTGTAACTTGGCTCAAATTTGATATTTTTGCATTTTCTTTCCAGTTTTGTGTTTGACTTATCAAGTGCTTCAAAATAAGTATAATCATGCCCTACTTTCGAGAAATCCGGTTTTTAACAATTTTTGCGAGGTTTTTTGAGAGGTCTGCTTCTTTAAACTACCGTAACTCACTCAGTTTCGCTTCAAGCTTTTCAAAAACTAGGTTTATGGAATCAGTTTGTTATGAGCTTCAAAATGAGTATAATCATGGGTAGATTCTGAGAAAATTGATTTTTGCCCTGGACCCATGCGCCTTTAAAGTCGAAAATTGAAGTTCTTAGAAACATGTCGTGTTTATACTCATTTTGAAGCTTATAAGCTCGTGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTTTTGGGAATTCATCTC</pcr_primer_p1>
		<pcr_primer_p2>GAGCCATTTTAAGCTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>871</pcr_amplicon_size>
		<canonical_amplicon>GAATTTTTGGGAATTCATCTCAATTTGAAAAATTCCAAAAATATCAATTTTGAGCCAAGTTGCACGGGGGTGGCCTAGAAAACCAAATTTTGAAAAGGCTAGGCCATGAGTTATATCTTTCGATTTCTCATGTTCTCCTGAGTTCAACAGTGTTTTCAGATTTCAAAAAATATCAATTTTGAGTCAAGTTACACCATGGTGGCCTAGGAACCCAAAACTAGGCCGGGAATTCAAAAAACTAACTTGGCTCAAAATTGGTATTTTTGAATTCTGATTTTAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAATTTTTGGGAATTCATCTCAATTTGAAAAATTCCAAAAATATCAATTTTGAGCCAAGTTGCACGGGGGTGGCCTAGAAAACCAAATTTTGAAAAGGCTAGGCCATGAGTTATATCTTTCGATTTCTCATGTTCTCCTGAGTTCAACAGTGTTTTCAGATTTCAAAAAATATCAATTTTGAGTCAAGTTACACCATGGTGGCCTAGGAACCCAAAACTAGGCCGGGAATTCAAAAAACTAACTTGGCTCAAAATTGGTATTTTYGAATTCTGATTTTAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25519</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>133756</contig_pos>
        <strand>+</strand>
        <context>tygaattctg[A/T]TTTTagtttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGGGAATTCAAAAAACTAACTTGGCTCAAAATTGGTATTTTTGAATTCTG</left_flank>
        <right_flank>TTTTAGTTTTGAAATTTACTCATTGAGAACTTCAAAATGAGTATAAACAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGCATTTCTCTCGAAAATTTCTAAAAACGCTACAACTACCGTACCTCATCCAACTCTCCAAACGCGGCAAAAAGCGTGCGAACGTCGTCTTCGGACTGTTGTTTTGATAGCATCCCGATGAACAACTTCTTATCATCCATTTTATCTTTGGGACTTGCCGGACGGCTGTCTGTGTCGGCTGGTTTCACTTGCATCGCTCGGTTCATCTGGAAAATTGATAATTTAGAATTTTTGGGAATTCATCTCAATTTGAAAAATTCCAAAAATATCAATTTTGAGCCAAGTTGCACGGGGGTGGCCTAGAAAACCAAATTTTGAAAAGGCTAGGCCATGAGTTATATCTTTCGATTTCTCATGTTCTCCTGAGTTCAACAGTGTTTTCAGATTTCAAAAAATATCAATTTTGAGTCAAGTTACACCATGGTGGCCTAGGAACCCAAAACTAGGCCGGGAATTCAAAAAACTAACTTGGCTCAAAATTGGTATTTTTGAATTCTGATTTTAGTTTTGAAATTTACTCATTGAGAACTTCAAAATGAGTATAAACATGACTAGATTCTGGGCAAGTTGAAATTCTGGGGTAGTCGCCTAGAAACCCAAAACTAGGCCACATCTTCCAATGATTGTAACTTGGCTCAAATTTGATATTTTTGCATTTTCTTTCCAGTTTTGTGTTTGACTTATCAAGTGCTTCAAAATAAGTATAATCATGCCCTACTTTCGAGAAATCCGGTTTTTAACAATTTTTGCGAGGTTTTTTGAGAGGTCTGCTTCTTTAAACTACCGTAACTCACTCAGTTTCGCTTCAAGCTTTTCAAAAACTAGGTTTATGGAATCAGTTTGTTATGAGCTTCAAAATGAGTATAATCATGGGTAGATTCTGAGAAAATTGATTTTTGCCCTGGACCCATGCGCCTTTAAAGTCGAAAATTGAAGTTCTTAGAAACATGTCGTGTTTATACTCATTTTGAAGCTTATAAGCTCGTGAGTTCAAAAAAA</canonical>
            <polymorphic>GGGCATTTCTCTCGAAAATTTCTAAAAACGCTACAACTACCGTACCTCATCCAACTCTCCAAACGCGGCAAAAAGCGTGCGAACGTCGTCTTCGGACTGTTGTTTTGATAGCATCCCGATGAACAACTTCTTATCATCCATTTTATCTTTGGGACTTGCCGGACGGCTGTCTGTGTCGGCTGGTTTCACTTGCATCGCTCGGTTCATCTGGAAAATTGATAATTTAGAATTTTTGGGAATTCATCTCAATTTGAAAAATTCCAAAAATATCAATTTTGAGCCAAGTTGCACGGGGGTGGCCTAGAAAACCAAATTTTGAAAAGGCTAGGCCATGAGTTATATCTTTCGATTTCTCATGTTCTCCTGAGTTCAACAGTGTTTTCAGATTTCAAAAAATATCAATTTTGAGTCAAGTTACACCATGGTGGCCTAGGAACCCAAAACTAGGCCGGGAATTCAAAAAACTAACTTGGCTCAAAATTGGTATTTTTGAATTCTGWTTTTAGTTTTGAAATTTACTCATTGAGAACTTCAAAATGAGTATAAACATGACTAGATTCTGGGCAAGTTGAAATTCTGGGGTAGTCGCCTAGAAACCCAAAACTAGGCCACATCTTCCAATGATTGTAACTTGGCTCAAATTTGATATTTTTGCATTTTCTTTCCAGTTTTGTGTTTGACTTATCAAGTGCTTCAAAATAAGTATAATCATGCCCTACTTTCGAGAAATCCGGTTTTTAACAATTTTTGCGAGGTTTTTTGAGAGGTCTGCTTCTTTAAACTACCGTAACTCACTCAGTTTCGCTTCAAGCTTTTCAAAAACTAGGTTTATGGAATCAGTTTGTTATGAGCTTCAAAATGAGTATAATCATGGGTAGATTCTGAGAAAATTGATTTTTGCCCTGGACCCATGCGCCTTTAAAGTCGAAAATTGAAGTTCTTAGAAACATGTCGTGTTTATACTCATTTTGAAGCTTATAAGCTCGTGAGTTCAAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>385 290 117 114 94</canonical_bands>
                <polymorphic_bands>499 290 117 94</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTTTTGGGAATTCATCTC</pcr_primer_p1>
		<pcr_primer_p2>GAGCCATTTTAAGCTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>871</pcr_amplicon_size>
		<canonical_amplicon>GAATTTTTGGGAATTCATCTCAATTTGAAAAATTCCAAAAATATCAATTTTGAGCCAAGTTGCACGGGGGTGGCCTAGAAAACCAAATTTTGAAAAGGCTAGGCCATGAGTTATATCTTTCGATTTCTCATGTTCTCCTGAGTTCAACAGTGTTTTCAGATTTCAAAAAATATCAATTTTGAGTCAAGTTACACCATGGTGGCCTAGGAACCCAAAACTAGGCCGGGAATTCAAAAAACTAACTTGGCTCAAAATTGGTATTTTTGAATTCTGATTTTAGTTTTGAAATTTAC</canonical_amplicon>
		<polymorphic_amplicon>GAATTTTTGGGAATTCATCTCAATTTGAAAAATTCCAAAAATATCAATTTTGAGCCAAGTTGCACGGGGGTGGCCTAGAAAACCAAATTTTGAAAAGGCTAGGCCATGAGTTATATCTTTCGATTTCTCATGTTCTCCTGAGTTCAACAGTGTTTTCAGATTTCAAAAAATATCAATTTTGAGTCAAGTTACACCATGGTGGCCTAGGAACCCAAAACTAGGCCGGGAATTCAAAAAACTAACTTGGCTCAAAATTGGTATTTTTGAATTCTGWTTTTAGTTTTGAAATTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25520</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>133789</contig_pos>
        <strand></strand>
        <context>ttgagaactt[C/T]aaaatgagta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTATTTTTGAATTCTGATTTTAGTTTTGAAATTTACTCATTGAGAACTT</left_flank>
        <right_flank>AAAATGAGTATAAACATGACTAGATTCTGGGCAAGTTGAAATTCTGGGGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACTACCGTACCTCATCCAACTCTCCAAACGCGGCAAAAAGCGTGCGAACGTCGTCTTCGGACTGTTGTTTTGATAGCATCCCGATGAACAACTTCTTATCATCCATTTTATCTTTGGGACTTGCCGGACGGCTGTCTGTGTCGGCTGGTTTCACTTGCATCGCTCGGTTCATCTGGAAAATTGATAATTTAGAATTTTTGGGAATTCATCTCAATTTGAAAAATTCCAAAAATATCAATTTTGAGCCAAGTTGCACGGGGGTGGCCTAGAAAACCAAATTTTGAAAAGGCTAGGCCATGAGTTATATCTTTCGATTTCTCATGTTCTCCTGAGTTCAACAGTGTTTTCAGATTTCAAAAAATATCAATTTTGAGTCAAGTTACACCATGGTGGCCTAGGAACCCAAAACTAGGCCGGGAATTCAAAAAACTAACTTGGCTCAAAATTGGTATTTTTGAATTCTGATTTTAGTTTTGAAATTTACTCATTGAGAACTTCAAAATGAGTATAAACATGACTAGATTCTGGGCAAGTTGAAATTCTGGGGTAGTCGCCTAGAAACCCAAAACTAGGCCACATCTTCCAATGATTGTAACTTGGCTCAAATTTGATATTTTTGCATTTTCTTTCCAGTTTTGTGTTTGACTTATCAAGTGCTTCAAAATAAGTATAATCATGCCCTACTTTCGAGAAATCCGGTTTTTAACAATTTTTGCGAGGTTTTTTGAGAGGTCTGCTTCTTTAAACTACCGTAACTCACTCAGTTTCGCTTCAAGCTTTTCAAAAACTAGGTTTATGGAATCAGTTTGTTATGAGCTTCAAAATGAGTATAATCATGGGTAGATTCTGAGAAAATTGATTTTTGCCCTGGACCCATGCGCCTTTAAAGTCGAAAATTGAAGTTCTTAGAAACATGTCGTGTTTATACTCATTTTGAAGCTTATAAGCTCGTGAGTTCAAAAAAATAAGTTTTTGTGTGTTCGGATCAGAGTTCAAAA</canonical>
            <polymorphic>CAACTACCGTACCTCATCCAACTCTCCAAACGCGGCAAAAAGCGTGCGAACGTCGTCTTCGGACTGTTGTTTTGATAGCATCCCGATGAACAACTTCTTATCATCCATTTTATCTTTGGGACTTGCCGGACGGCTGTCTGTGTCGGCTGGTTTCACTTGCATCGCTCGGTTCATCTGGAAAATTGATAATTTAGAATTTTTGGGAATTCATCTCAATTTGAAAAATTCCAAAAATATCAATTTTGAGCCAAGTTGCACGGGGGTGGCCTAGAAAACCAAATTTTGAAAAGGCTAGGCCATGAGTTATATCTTTCGATTTCTCATGTTCTCCTGAGTTCAACAGTGTTTTCAGATTTCAAAAAATATCAATTTTGAGTCAAGTTACACCATGGTGGCCTAGGAACCCAAAACTAGGCCGGGAATTCAAAAAACTAACTTGGCTCAAAATTGGTATTTTTGAATTCTGATTTTAGTTTTGAAATTTACTCATTGAGAACTTYAAAATGAGTATAAACATGACTAGATTCTGGGCAAGTTGAAATTCTGGGGTAGTCGCCTAGAAACCCAAAACTAGGCCACATCTTCCAATGATTGTAACTTGGCTCAAATTTGATATTTTTGCATTTTCTTTCCAGTTTTGTGTTTGACTTATCAAGTGCTTCAAAATAAGTATAATCATGCCCTACTTTCGAGAAATCCGGTTTTTAACAATTTTTGCGAGGTTTTTTGAGAGGTCTGCTTCTTTAAACTACCGTAACTCACTCAGTTTCGCTTCAAGCTTTTCAAAAACTAGGTTTATGGAATCAGTTTGTTATGAGCTTCAAAATGAGTATAATCATGGGTAGATTCTGAGAAAATTGATTTTTGCCCTGGACCCATGCGCCTTTAAAGTCGAAAATTGAAGTTCTTAGAAACATGTCGTGTTTATACTCATTTTGAAGCTTATAAGCTCGTGAGTTCAAAAAAATAAGTTTTTGTGTGTTCGGATCAGAGTTCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTTTTGGGAATTCATCTC</pcr_primer_p1>
		<pcr_primer_p2>GAGCCATTTTAAGCTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>871</pcr_amplicon_size>
		<canonical_amplicon>GAATTTTTGGGAATTCATCTCAATTTGAAAAATTCCAAAAATATCAATTTTGAGCCAAGTTGCACGGGGGTGGCCTAGAAAACCAAATTTTGAAAAGGCTAGGCCATGAGTTATATCTTTCGATTTCTCATGTTCTCCTGAGTTCAACAGTGTTTTCAGATTTCAAAAAATATCAATTTTGAGTCAAGTTACACCATGGTGGCCTAGGAACCCAAAACTAGGCCGGGAATTCAAAAAACTAACTTGGCTCAAAATTGGTATTTTTGAATTCTGATTTTAGTTTTGAAATTTACTCATTGAGAACTTCAAAATGAGTATAAACATGA</canonical_amplicon>
		<polymorphic_amplicon>GAATTTTTGGGAATTCATCTCAATTTGAAAAATTCCAAAAATATCAATTTTGAGCCAAGTTGCACGGGGGTGGCCTAGAAAACCAAATTTTGAAAAGGCTAGGCCATGAGTTATATCTTTCGATTTCTCATGTTCTCCTGAGTTCAACAGTGTTTTCAGATTTCAAAAAATATCAATTTTGAGTCAAGTTACACCATGGTGGCCTAGGAACCCAAAACTAGGCCGGGAATTCAAAAAACTAACTTGGCTCAAAATTGGTATTTTTGAATTCTGATTTTAGTTTTGAAATTTACTCATTGAGAACTTYAAAATGAGTATAAACATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25521</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>133864</contig_pos>
        <strand></strand>
        <context>ccaaaactag[G/C]ccacatcttc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TTCTGGGCAAGTTGAAATTCTGGGGTAGTCGCCTAGAAACCCAAAACTAG</left_flank>
        <right_flank>CCACATCTTCCAATGATTGTAACTTGGCTCAAATTTGATATTTTTGCATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGCATCCCGATGAACAACTTCTTATCATCCATTTTATCTTTGGGACTTGCCGGACGGCTGTCTGTGTCGGCTGGTTTCACTTGCATCGCTCGGTTCATCTGGAAAATTGATAATTTAGAATTTTTGGGAATTCATCTCAATTTGAAAAATTCCAAAAATATCAATTTTGAGCCAAGTTGCACGGGGGTGGCCTAGAAAACCAAATTTTGAAAAGGCTAGGCCATGAGTTATATCTTTCGATTTCTCATGTTCTCCTGAGTTCAACAGTGTTTTCAGATTTCAAAAAATATCAATTTTGAGTCAAGTTACACCATGGTGGCCTAGGAACCCAAAACTAGGCCGGGAATTCAAAAAACTAACTTGGCTCAAAATTGGTATTTTTGAATTCTGATTTTAGTTTTGAAATTTACTCATTGAGAACTTCAAAATGAGTATAAACATGACTAGATTCTGGGCAAGTTGAAATTCTGGGGTAGTCGCCTAGAAACCCAAAACTAGGCCACATCTTCCAATGATTGTAACTTGGCTCAAATTTGATATTTTTGCATTTTCTTTCCAGTTTTGTGTTTGACTTATCAAGTGCTTCAAAATAAGTATAATCATGCCCTACTTTCGAGAAATCCGGTTTTTAACAATTTTTGCGAGGTTTTTTGAGAGGTCTGCTTCTTTAAACTACCGTAACTCACTCAGTTTCGCTTCAAGCTTTTCAAAAACTAGGTTTATGGAATCAGTTTGTTATGAGCTTCAAAATGAGTATAATCATGGGTAGATTCTGAGAAAATTGATTTTTGCCCTGGACCCATGCGCCTTTAAAGTCGAAAATTGAAGTTCTTAGAAACATGTCGTGTTTATACTCATTTTGAAGCTTATAAGCTCGTGAGTTCAAAAAAATAAGTTTTTGTGTGTTCGGATCAGAGTTCAAAAAGTTACGGTAGATTTTAAATTTCACAAATTTCACAAAAACCCGCCTCAAAGCTTAAAATGGCTCCATTAAAGCAA</canonical>
            <polymorphic>TAGCATCCCGATGAACAACTTCTTATCATCCATTTTATCTTTGGGACTTGCCGGACGGCTGTCTGTGTCGGCTGGTTTCACTTGCATCGCTCGGTTCATCTGGAAAATTGATAATTTAGAATTTTTGGGAATTCATCTCAATTTGAAAAATTCCAAAAATATCAATTTTGAGCCAAGTTGCACGGGGGTGGCCTAGAAAACCAAATTTTGAAAAGGCTAGGCCATGAGTTATATCTTTCGATTTCTCATGTTCTCCTGAGTTCAACAGTGTTTTCAGATTTCAAAAAATATCAATTTTGAGTCAAGTTACACCATGGTGGCCTAGGAACCCAAAACTAGGCCGGGAATTCAAAAAACTAACTTGGCTCAAAATTGGTATTTTTGAATTCTGATTTTAGTTTTGAAATTTACTCATTGAGAACTTCAAAATGAGTATAAACATGACTAGATTCTGGGCAAGTTGAAATTCTGGGGTAGTCGCCTAGAAACCCAAAACTAGSCCACATCTTCCAATGATTGTAACTTGGCTCAAATTTGATATTTTTGCATTTTCTTTCCAGTTTTGTGTTTGACTTATCAAGTGCTTCAAAATAAGTATAATCATGCCCTACTTTCGAGAAATCCGGTTTTTAACAATTTTTGCGAGGTTTTTTGAGAGGTCTGCTTCTTTAAACTACCGTAACTCACTCAGTTTCGCTTCAAGCTTTTCAAAAACTAGGTTTATGGAATCAGTTTGTTATGAGCTTCAAAATGAGTATAATCATGGGTAGATTCTGAGAAAATTGATTTTTGCCCTGGACCCATGCGCCTTTAAAGTCGAAAATTGAAGTTCTTAGAAACATGTCGTGTTTATACTCATTTTGAAGCTTATAAGCTCGTGAGTTCAAAAAAATAAGTTTTTGTGTGTTCGGATCAGAGTTCAAAAAGTTACGGTAGATTTTAAATTTCACAAATTTCACAAAAACCCGCCTCAAAGCTTAAAATGGCTCCATTAAAGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>504 336 160</canonical_bands>
                <polymorphic_bands>664 336</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 191 160 99 30 20</canonical_bands>
                <polymorphic_bands>660 191 99 30 20</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>176 135 123 102 101 99 58 40 27 25 25 20 19 14 13 10 8 5</canonical_bands>
                <polymorphic_bands>176 162 123 102 101 99 58 40 25 25 20 19 14 13 10 8 5</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 191 180 99 30</canonical_bands>
                <polymorphic_bands>680 191 99 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTTTTGGGAATTCATCTC</pcr_primer_p1>
		<pcr_primer_p2>GAGCCATTTTAAGCTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>871</pcr_amplicon_size>
		<canonical_amplicon>GAATTTTTGGGAATTCATCTCAATTTGAAAAATTCCAAAAATATCAATTTTGAGCCAAGTTGCACGGGGGTGGCCTAGAAAACCAAATTTTGAAAAGGCTAGGCCATGAGTTATATCTTTCGATTTCTCATGTTCTCCTGAGTTCAACAGTGTTTTCAGATTTCAAAAAATATCAATTTTGAGTCAAGTTACACCATGGTGGCCTAGGAACCCAAAACTAGGCCGGGAATTCAAAAAACTAACTTGGCTCAAAATTGGTATTTTTGAATTCTGATTTTAGTTTTGAAATTTACTCATTGAGAACTTCAAAATGAGTATAAACATGACTAGATTCTGGGCAAGTTGAAATTCTGGGGTAGTCGCCTAGAAACCCAAAACTAGGCCACATCTTCCAATGATTGTAACTTGGCTCAAATTTGATATTTTTGCATTTTCTTTCCAGTTTTGTGTTTGACTTATCAAGTGCTTCAAAATAAGTATAATCATGCCCTACTTTCGAGAAATCCGGTTTTTAACAATTTTTGCGAGGTTTTTTGAGAGGTCTGCTTCTTTAAACTACCGTAACTCACTCAGTTTCGCTTCAAGCTTTTCAAAAACTAGGTTTATGGAATCAGTTTGTTATGAGCTTCAAAATGAGTATAATCATGGGTAGATTCTGAGAAAATTGATTTTTGCCCTGGACCCATGCGCCTTTAAAGTCGAAAATTGAAGTTCTTAGAAACATGTCGTGTTTATACTCATTTTGAAGCTTATAAGCTCGTGAGTTCAAAAAAATAAGTTTTTGTGTGTTCGGATCAGAGTTCAAAAAGTTACGGTAGATTTTAAATTTCACAAATTTCACAAAAACCCGCCTCAAAGCTTAAAATGGCTC</canonical_amplicon>
		<polymorphic_amplicon>GAATTTTTGGGAATTCATCTCAATTTGAAAAATTCCAAAAATATCAATTTTGAGCCAAGTTGCACGGGGGTGGCCTAGAAAACCAAATTTTGAAAAGGCTAGGCCATGAGTTATATCTTTCGATTTCTCATGTTCTCCTGAGTTCAACAGTGTTTTCAGATTTCAAAAAATATCAATTTTGAGTCAAGTTACACCATGGTGGCCTAGGAACCCAAAACTAGGCCGGGAATTCAAAAAACTAACTTGGCTCAAAATTGGTATTTTTGAATTCTGATTTTAGTTTTGAAATTTACTCATTGAGAACTTCAAAATGAGTATAAACATGACTAGATTCTGGGCAAGTTGAAATTCTGGGGTAGTCGCCTAGAAACCCAAAACTAGSCCACATCTTCCAATGATTGTAACTTGGCTCAAATTTGATATTTTTGCATTTTCTTTCCAGTTTTGTGTTTGACTTATCAAGTGCTTCAAAATAAGTATAATCATGCCCTACTTTCGAGAAATCCGGTTTTTAACAATTTTTGCGAGGTTTTTTGAGAGGTCTGCTTCTTTAAACTACCGTAACTCACTCAGTTTCGCTTCAAGCTTTTCAAAAACTAGGTTTATGGAATCAGTTTGTTATGAGCTTCAAAATGAGTATAATCATGGGTAGATTCTGAGAAAATTGATTTTTGCCCTGGACCCATGCGCCTTTAAAGTCGAAAATTGAAGTTCTTAGAAACATGTCGTGTTTATACTCATTTTGAAGCTTATAAGCTCGTGAGTTCAAAAAAATAAGTTTTTGTGTGTTCGGATCAGAGTTCAAAAAGTTACGGTAGATTTTAAATTTCACAAATTTCACAAAAACCCGCCTCAAAGCTTAAAATGGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25522</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>133946</contig_pos>
        <strand></strand>
        <context>acttatcaag[T/A]gcttcaaaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATTTGATATTTTTGCATTTTCTTTCCAGTTTTGTGTTTGACTTATCAAG</left_flank>
        <right_flank>GCTTCAAAATAAGTATAATCATGCCCTACTTTCGAGAAATCCGGTTTTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCATCGCTCGGTTCATCTGGAAAATTGATAATTTAGAATTTTTGGGAATTCATCTCAATTTGAAAAATTCCAAAAATATCAATTTTGAGCCAAGTTGCACGGGGGTGGCCTAGAAAACCAAATTTTGAAAAGGCTAGGCCATGAGTTATATCTTTCGATTTCTCATGTTCTCCTGAGTTCAACAGTGTTTTCAGATTTCAAAAAATATCAATTTTGAGTCAAGTTACACCATGGTGGCCTAGGAACCCAAAACTAGGCCGGGAATTCAAAAAACTAACTTGGCTCAAAATTGGTATTTTTGAATTCTGATTTTAGTTTTGAAATTTACTCATTGAGAACTTCAAAATGAGTATAAACATGACTAGATTCTGGGCAAGTTGAAATTCTGGGGTAGTCGCCTAGAAACCCAAAACTAGGCCACATCTTCCAATGATTGTAACTTGGCTCAAATTTGATATTTTTGCATTTTCTTTCCAGTTTTGTGTTTGACTTATCAAGTGCTTCAAAATAAGTATAATCATGCCCTACTTTCGAGAAATCCGGTTTTTAACAATTTTTGCGAGGTTTTTTGAGAGGTCTGCTTCTTTAAACTACCGTAACTCACTCAGTTTCGCTTCAAGCTTTTCAAAAACTAGGTTTATGGAATCAGTTTGTTATGAGCTTCAAAATGAGTATAATCATGGGTAGATTCTGAGAAAATTGATTTTTGCCCTGGACCCATGCGCCTTTAAAGTCGAAAATTGAAGTTCTTAGAAACATGTCGTGTTTATACTCATTTTGAAGCTTATAAGCTCGTGAGTTCAAAAAAATAAGTTTTTGTGTGTTCGGATCAGAGTTCAAAAAGTTACGGTAGATTTTAAATTTCACAAATTTCACAAAAACCCGCCTCAAAGCTTAAAATGGCTCCATTAAAGCAAATTTTTCCATTTTTAAAGGGTATTTCAGCAAAAACTTACAAATAAACGTTCCAAAACTTTTCGACTAGAATGCTATTGCTCA</canonical>
            <polymorphic>TGCATCGCTCGGTTCATCTGGAAAATTGATAATTTAGAATTTTTGGGAATTCATCTCAATTTGAAAAATTCCAAAAATATCAATTTTGAGCCAAGTTGCACGGGGGTGGCCTAGAAAACCAAATTTTGAAAAGGCTAGGCCATGAGTTATATCTTTCGATTTCTCATGTTCTCCTGAGTTCAACAGTGTTTTCAGATTTCAAAAAATATCAATTTTGAGTCAAGTTACACCATGGTGGCCTAGGAACCCAAAACTAGGCCGGGAATTCAAAAAACTAACTTGGCTCAAAATTGGTATTTTTGAATTCTGATTTTAGTTTTGAAATTTACTCATTGAGAACTTCAAAATGAGTATAAACATGACTAGATTCTGGGCAAGTTGAAATTCTGGGGTAGTCGCCTAGAAACCCAAAACTAGGCCACATCTTCCAATGATTGTAACTTGGCTCAAATTTGATATTTTTGCATTTTCTTTCCAGTTTTGTGTTTGACTTATCAAGWGCTTCAAAATAAGTATAATCATGCCCTACTTTCGAGAAATCCGGTTTTTAACAATTTTTGCGAGGTTTTTTGAGAGGTCTGCTTCTTTAAACTACCGTAACTCACTCAGTTTCGCTTCAAGCTTTTCAAAAACTAGGTTTATGGAATCAGTTTGTTATGAGCTTCAAAATGAGTATAATCATGGGTAGATTCTGAGAAAATTGATTTTTGCCCTGGACCCATGCGCCTTTAAAGTCGAAAATTGAAGTTCTTAGAAACATGTCGTGTTTATACTCATTTTGAAGCTTATAAGCTCGTGAGTTCAAAAAAATAAGTTTTTGTGTGTTCGGATCAGAGTTCAAAAAGTTACGGTAGATTTTAAATTTCACAAATTTCACAAAAACCCGCCTCAAAGCTTAAAATGGCTCCATTAAAGCAAATTTTTCCATTTTTAAAGGGTATTTCAGCAAAAACTTACAAATAAACGTTCCAAAACTTTTCGACTAGAATGCTATTGCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>184 162 124 103 100 80 64 43 41 32 24 16 9 8 8 2</canonical_bands>
                <polymorphic_bands>184 162 124 119 100 80 64 43 41 32 24 9 8 8 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTTTTGGGAATTCATCTC</pcr_primer_p1>
		<pcr_primer_p2>GAGCCATTTTAAGCTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>871</pcr_amplicon_size>
		<canonical_amplicon>GAATTTTTGGGAATTCATCTCAATTTGAAAAATTCCAAAAATATCAATTTTGAGCCAAGTTGCACGGGGGTGGCCTAGAAAACCAAATTTTGAAAAGGCTAGGCCATGAGTTATATCTTTCGATTTCTCATGTTCTCCTGAGTTCAACAGTGTTTTCAGATTTCAAAAAATATCAATTTTGAGTCAAGTTACACCATGGTGGCCTAGGAACCCAAAACTAGGCCGGGAATTCAAAAAACTAACTTGGCTCAAAATTGGTATTTTTGAATTCTGATTTTAGTTTTGAAATTTACTCATTGAGAACTTCAAAATGAGTATAAACATGACTAGATTCTGGGCAAGTTGAAATTCTGGGGTAGTCGCCTAGAAACCCAAAACTAGGCCACATCTTCCAATGATTGTAACTTGGCTCAAATTTGATATTTTTGCATTTTCTTTCCAGTTTTGTGTTTGACTTATCAAGTGCTTCAAAATAAGTATAATCATGCCCTACTTTCGAGAAATCCGGTTTTTAACAATTTTTGCGAGGTTTTTTGAGAGGTCTGCTTCTTTAAACTACCGTAACTCACTCAGTTTCGCTTCAAGCTTTTCAAAAACTAGGTTTATGGAATCAGTTTGTTATGAGCTTCAAAATGAGTATAATCATGGGTAGATTCTGAGAAAATTGATTTTTGCCCTGGACCCATGCGCCTTTAAAGTCGAAAATTGAAGTTCTTAGAAACATGTCGTGTTTATACTCATTTTGAAGCTTATAAGCTCGTGAGTTCAAAAAAATAAGTTTTTGTGTGTTCGGATCAGAGTTCAAAAAGTTACGGTAGATTTTAAATTTCACAAATTTCACAAAAACCCGCCTCAAAGCTTAAAATGGCTC</canonical_amplicon>
		<polymorphic_amplicon>GAATTTTTGGGAATTCATCTCAATTTGAAAAATTCCAAAAATATCAATTTTGAGCCAAGTTGCACGGGGGTGGCCTAGAAAACCAAATTTTGAAAAGGCTAGGCCATGAGTTATATCTTTCGATTTCTCATGTTCTCCTGAGTTCAACAGTGTTTTCAGATTTCAAAAAATATCAATTTTGAGTCAAGTTACACCATGGTGGCCTAGGAACCCAAAACTAGGCCGGGAATTCAAAAAACTAACTTGGCTCAAAATTGGTATTTTTGAATTCTGATTTTAGTTTTGAAATTTACTCATTGAGAACTTCAAAATGAGTATAAACATGACTAGATTCTGGGCAAGTTGAAATTCTGGGGTAGTCGCCTAGAAACCCAAAACTAGGCCACATCTTCCAATGATTGTAACTTGGCTCAAATTTGATATTTTTGCATTTTCTTTCCAGTTTTGTGTTTGACTTATCAAGWGCTTCAAAATAAGTATAATCATGCCCTACTTTCGAGAAATCCGGTTTTTAACAATTTTTGCGAGGTTTTTTGAGAGGTCTGCTTCTTTAAACTACCGTAACTCACTCAGTTTCGCTTCAAGCTTTTCAAAAACTAGGTTTATGGAATCAGTTTGTTATGAGCTTCAAAATGAGTATAATCATGGGTAGATTCTGAGAAAATTGATTTTTGCCCTGGACCCATGCGCCTTTAAAGTCGAAAATTGAAGTTCTTAGAAACATGTCGTGTTTATACTCATTTTGAAGCTTATAAGCTCGTGAGTTCAAAAAAATAAGTTTTTGTGTGTTCGGATCAGAGTTCAAAAAGTTACGGTAGATTTTAAATTTCACAAATTTCACAAAAACCCGCCTCAAAGCTTAAAATGGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25523</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>133982</contig_pos>
        <strand></strand>
        <context>ctactttcga[G/A]aaatccggtt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTGACTTATCAAGTGCTTCAAAATAAGTATAATCATGCCCTACTTTCGA</left_flank>
        <right_flank>AAATCCGGTTTTTAACAATTTTTGCGAGGTTTTTTGAGAGGTCTGCTTCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTTTTGGGAATTCATCTCAATTTGAAAAATTCCAAAAATATCAATTTTGAGCCAAGTTGCACGGGGGTGGCCTAGAAAACCAAATTTTGAAAAGGCTAGGCCATGAGTTATATCTTTCGATTTCTCATGTTCTCCTGAGTTCAACAGTGTTTTCAGATTTCAAAAAATATCAATTTTGAGTCAAGTTACACCATGGTGGCCTAGGAACCCAAAACTAGGCCGGGAATTCAAAAAACTAACTTGGCTCAAAATTGGTATTTTTGAATTCTGATTTTAGTTTTGAAATTTACTCATTGAGAACTTCAAAATGAGTATAAACATGACTAGATTCTGGGCAAGTTGAAATTCTGGGGTAGTCGCCTAGAAACCCAAAACTAGGCCACATCTTCCAATGATTGTAACTTGGCTCAAATTTGATATTTTTGCATTTTCTTTCCAGTTTTGTGTTTGACTTATCAAGTGCTTCAAAATAAGTATAATCATGCCCTACTTTCGAGAAATCCGGTTTTTAACAATTTTTGCGAGGTTTTTTGAGAGGTCTGCTTCTTTAAACTACCGTAACTCACTCAGTTTCGCTTCAAGCTTTTCAAAAACTAGGTTTATGGAATCAGTTTGTTATGAGCTTCAAAATGAGTATAATCATGGGTAGATTCTGAGAAAATTGATTTTTGCCCTGGACCCATGCGCCTTTAAAGTCGAAAATTGAAGTTCTTAGAAACATGTCGTGTTTATACTCATTTTGAAGCTTATAAGCTCGTGAGTTCAAAAAAATAAGTTTTTGTGTGTTCGGATCAGAGTTCAAAAAGTTACGGTAGATTTTAAATTTCACAAATTTCACAAAAACCCGCCTCAAAGCTTAAAATGGCTCCATTAAAGCAAATTTTTCCATTTTTAAAGGGTATTTCAGCAAAAACTTACAAATAAACGTTCCAAAACTTTTCGACTAGAATGCTATTGCTCAGTTTTGGGGGGTGTAGAAAAGAGAATGGCTCGAAAA</canonical>
            <polymorphic>GAATTTTTGGGAATTCATCTCAATTTGAAAAATTCCAAAAATATCAATTTTGAGCCAAGTTGCACGGGGGTGGCCTAGAAAACCAAATTTTGAAAAGGCTAGGCCATGAGTTATATCTTTCGATTTCTCATGTTCTCCTGAGTTCAACAGTGTTTTCAGATTTCAAAAAATATCAATTTTGAGTCAAGTTACACCATGGTGGCCTAGGAACCCAAAACTAGGCCGGGAATTCAAAAAACTAACTTGGCTCAAAATTGGTATTTTTGAATTCTGATTTTAGTTTTGAAATTTACTCATTGAGAACTTCAAAATGAGTATAAACATGACTAGATTCTGGGCAAGTTGAAATTCTGGGGTAGTCGCCTAGAAACCCAAAACTAGGCCACATCTTCCAATGATTGTAACTTGGCTCAAATTTGATATTTTTGCATTTTCTTTCCAGTTTTGTGTTTGACTTATCAAGTGCTTCAAAATAAGTATAATCATGCCCTACTTTCGARAAATCCGGTTTTTAACAATTTTTGCGAGGTTTTTTGAGAGGTCTGCTTCTTTAAACTACCGTAACTCACTCAGTTTCGCTTCAAGCTTTTCAAAAACTAGGTTTATGGAATCAGTTTGTTATGAGCTTCAAAATGAGTATAATCATGGGTAGATTCTGAGAAAATTGATTTTTGCCCTGGACCCATGCGCCTTTAAAGTCGAAAATTGAAGTTCTTAGAAACATGTCGTGTTTATACTCATTTTGAAGCTTATAAGCTCGTGAGTTCAAAAAAATAAGTTTTTGTGTGTTCGGATCAGAGTTCAAAAAGTTACGGTAGATTTTAAATTTCACAAATTTCACAAAAACCCGCCTCAAAGCTTAAAATGGCTCCATTAAAGCAAATTTTTCCATTTTTAAAGGGTATTTCAGCAAAAACTTACAAATAAACGTTCCAAAACTTTTCGACTAGAATGCTATTGCTCAGTTTTGGGGGGTGTAGAAAAGAGAATGGCTCGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>360 262 241 137</canonical_bands>
                <polymorphic_bands>622 241 137</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTTTTGGGAATTCATCTC</pcr_primer_p1>
		<pcr_primer_p2>GAGCCATTTTAAGCTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>871</pcr_amplicon_size>
		<canonical_amplicon>GAATTTTTGGGAATTCATCTCAATTTGAAAAATTCCAAAAATATCAATTTTGAGCCAAGTTGCACGGGGGTGGCCTAGAAAACCAAATTTTGAAAAGGCTAGGCCATGAGTTATATCTTTCGATTTCTCATGTTCTCCTGAGTTCAACAGTGTTTTCAGATTTCAAAAAATATCAATTTTGAGTCAAGTTACACCATGGTGGCCTAGGAACCCAAAACTAGGCCGGGAATTCAAAAAACTAACTTGGCTCAAAATTGGTATTTTTGAATTCTGATTTTAGTTTTGAAATTTACTCATTGAGAACTTCAAAATGAGTATAAACATGACTAGATTCTGGGCAAGTTGAAATTCTGGGGTAGTCGCCTAGAAACCCAAAACTAGGCCACATCTTCCAATGATTGTAACTTGGCTCAAATTTGATATTTTTGCATTTTCTTTCCAGTTTTGTGTTTGACTTATCAAGTGCTTCAAAATAAGTATAATCATGCCCTACTTTCGAGAAATCCGGTTTTTAACAATTTTTGCGAGGTTTTTTGAGAGGTCTGCTTCTTTAAACTACCGTAACTCACTCAGTTTCGCTTCAAGCTTTTCAAAAACTAGGTTTATGGAATCAGTTTGTTATGAGCTTCAAAATGAGTATAATCATGGGTAGATTCTGAGAAAATTGATTTTTGCCCTGGACCCATGCGCCTTTAAAGTCGAAAATTGAAGTTCTTAGAAACATGTCGTGTTTATACTCATTTTGAAGCTTATAAGCTCGTGAGTTCAAAAAAATAAGTTTTTGTGTGTTCGGATCAGAGTTCAAAAAGTTACGGTAGATTTTAAATTTCACAAATTTCACAAAAACCCGCCTCAAAGCTTAAAATGGCTC</canonical_amplicon>
		<polymorphic_amplicon>GAATTTTTGGGAATTCATCTCAATTTGAAAAATTCCAAAAATATCAATTTTGAGCCAAGTTGCACGGGGGTGGCCTAGAAAACCAAATTTTGAAAAGGCTAGGCCATGAGTTATATCTTTCGATTTCTCATGTTCTCCTGAGTTCAACAGTGTTTTCAGATTTCAAAAAATATCAATTTTGAGTCAAGTTACACCATGGTGGCCTAGGAACCCAAAACTAGGCCGGGAATTCAAAAAACTAACTTGGCTCAAAATTGGTATTTTTGAATTCTGATTTTAGTTTTGAAATTTACTCATTGAGAACTTCAAAATGAGTATAAACATGACTAGATTCTGGGCAAGTTGAAATTCTGGGGTAGTCGCCTAGAAACCCAAAACTAGGCCACATCTTCCAATGATTGTAACTTGGCTCAAATTTGATATTTTTGCATTTTCTTTCCAGTTTTGTGTTTGACTTATCAAGTGCTTCAAAATAAGTATAATCATGCCCTACTTTCGARAAATCCGGTTTTTAACAATTTTTGCGAGGTTTTTTGAGAGGTCTGCTTCTTTAAACTACCGTAACTCACTCAGTTTCGCTTCAAGCTTTTCAAAAACTAGGTTTATGGAATCAGTTTGTTATGAGCTTCAAAATGAGTATAATCATGGGTAGATTCTGAGAAAATTGATTTTTGCCCTGGACCCATGCGCCTTTAAAGTCGAAAATTGAAGTTCTTAGAAACATGTCGTGTTTATACTCATTTTGAAGCTTATAAGCTCGTGAGTTCAAAAAAATAAGTTTTTGTGTGTTCGGATCAGAGTTCAAAAAGTTACGGTAGATTTTAAATTTCACAAATTTCACAAAAACCCGCCTCAAAGCTTAAAATGGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25524</snp_id>
        <super_contig>c001300903.Contig1</super_contig>
        <contig_pos>134059</contig_pos>
        <strand></strand>
        <context>cactcagttt[C/T]gcttcaagct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGTTTTTTGAGAGGTCTGCTTCTTTAAACTACCGTAACTCACTCAGTTT</left_flank>
        <right_flank>GCTTCAAGCTTTTCAAAAACTAGGTTTATGGAATCAGTTTGTTATGAGCT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAACCAAATTTTGAAAAGGCTAGGCCATGAGTTATATCTTTCGATTTCTCATGTTCTCCTGAGTTCAACAGTGTTTTCAGATTTCAAAAAATATCAATTTTGAGTCAAGTTACACCATGGTGGCCTAGGAACCCAAAACTAGGCCGGGAATTCAAAAAACTAACTTGGCTCAAAATTGGTATTTTTGAATTCTGATTTTAGTTTTGAAATTTACTCATTGAGAACTTCAAAATGAGTATAAACATGACTAGATTCTGGGCAAGTTGAAATTCTGGGGTAGTCGCCTAGAAACCCAAAACTAGGCCACATCTTCCAATGATTGTAACTTGGCTCAAATTTGATATTTTTGCATTTTCTTTCCAGTTTTGTGTTTGACTTATCAAGTGCTTCAAAATAAGTATAATCATGCCCTACTTTCGAGAAATCCGGTTTTTAACAATTTTTGCGAGGTTTTTTGAGAGGTCTGCTTCTTTAAACTACCGTAACTCACTCAGTTTCGCTTCAAGCTTTTCAAAAACTAGGTTTATGGAATCAGTTTGTTATGAGCTTCAAAATGAGTATAATCATGGGTAGATTCTGAGAAAATTGATTTTTGCCCTGGACCCATGCGCCTTTAAAGTCGAAAATTGAAGTTCTTAGAAACATGTCGTGTTTATACTCATTTTGAAGCTTATAAGCTCGTGAGTTCAAAAAAATAAGTTTTTGTGTGTTCGGATCAGAGTTCAAAAAGTTACGGTAGATTTTAAATTTCACAAATTTCACAAAAACCCGCCTCAAAGCTTAAAATGGCTCCATTAAAGCAAATTTTTCCATTTTTAAAGGGTATTTCAGCAAAAACTTACAAATAAACGTTCCAAAACTTTTCGACTAGAATGCTATTGCTCAGTTTTGGGGGGTGTAGAAAAGAGAATGGCTCGAAAAGTAACACGTCTTCTCTGTCTCTTTTTATTCTATCCAATACACACAGATGCGCCCGTTACGTACCTAATCCAATTCGT</canonical>
            <polymorphic>GAAAACCAAATTTTGAAAAGGCTAGGCCATGAGTTATATCTTTCGATTTCTCATGTTCTCCTGAGTTCAACAGTGTTTTCAGATTTCAAAAAATATCAATTTTGAGTCAAGTTACACCATGGTGGCCTAGGAACCCAAAACTAGGCCGGGAATTCAAAAAACTAACTTGGCTCAAAATTGGTATTTTTGAATTCTGATTTTAGTTTTGAAATTTACTCATTGAGAACTTCAAAATGAGTATAAACATGACTAGATTCTGGGCAAGTTGAAATTCTGGGGTAGTCGCCTAGAAACCCAAAACTAGGCCACATCTTCCAATGATTGTAACTTGGCTCAAATTTGATATTTTTGCATTTTCTTTCCAGTTTTGTGTTTGACTTATCAAGTGCTTCAAAATAAGTATAATCATGCCCTACTTTCGAGAAATCCGGTTTTTAACAATTTTTGCGAGGTTTTTTGAGAGGTCTGCTTCTTTAAACTACCGTAACTCACTCAGTTTYGCTTCAAGCTTTTCAAAAACTAGGTTTATGGAATCAGTTTGTTATGAGCTTCAAAATGAGTATAATCATGGGTAGATTCTGAGAAAATTGATTTTTGCCCTGGACCCATGCGCCTTTAAAGTCGAAAATTGAAGTTCTTAGAAACATGTCGTGTTTATACTCATTTTGAAGCTTATAAGCTCGTGAGTTCAAAAAAATAAGTTTTTGTGTGTTCGGATCAGAGTTCAAAAAGTTACGGTAGATTTTAAATTTCACAAATTTCACAAAAACCCGCCTCAAAGCTTAAAATGGCTCCATTAAAGCAAATTTTTCCATTTTTAAAGGGTATTTCAGCAAAAACTTACAAATAAACGTTCCAAAACTTTTCGACTAGAATGCTATTGCTCAGTTTTGGGGGGTGTAGAAAAGAGAATGGCTCGAAAAGTAACACGTCTTCTCTGTCTCTTTTTATTCTATCCAATACACACAGATGCGCCCGTTACGTACCTAATCCAATTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTTTTGGGAATTCATCTC</pcr_primer_p1>
		<pcr_primer_p2>GAGCCATTTTAAGCTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>871</pcr_amplicon_size>
		<canonical_amplicon>TCGCTTCAAGCTTTTCAAAAACTAGGTTTATGGAATCAGTTTGTTATGAGCTTCAAAATGAGTATAATCATGGGTAGATTCTGAGAAAATTGATTTTTGCCCTGGACCCATGCGCCTTTAAAGTCGAAAATTGAAGTTCTTAGAAACATGTCGTGTTTATACTCATTTTGAAGCTTATAAGCTCGTGAGTTCAAAAAAATAAGTTTTTGTGTGTTCGGATCAGAGTTCAAAAAGTTACGGTAGATTTTAAATTTCACAAATTTCACAAAAACCCGCCTCAAAGCTTAAAATGGCTC</canonical_amplicon>
		<polymorphic_amplicon>TYGCTTCAAGCTTTTCAAAAACTAGGTTTATGGAATCAGTTTGTTATGAGCTTCAAAATGAGTATAATCATGGGTAGATTCTGAGAAAATTGATTTTTGCCCTGGACCCATGCGCCTTTAAAGTCGAAAATTGAAGTTCTTAGAAACATGTCGTGTTTATACTCATTTTGAAGCTTATAAGCTCGTGAGTTCAAAAAAATAAGTTTTTGTGTGTTCGGATCAGAGTTCAAAAAGTTACGGTAGATTTTAAATTTCACAAATTTCACAAAAACCCGCCTCAAAGCTTAAAATGGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25525</snp_id>
        <super_contig>c001401072.Contig1</super_contig>
        <contig_pos>29822</contig_pos>
        <strand>-</strand>
        <context>AAATCACTGA[A/G]AAGCTGACTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTATTGAACTTCTCTCCAACACAAGCCTTAATATCAATGAAATCACTGA</left_flank>
        <right_flank>AAGCTGACTGATTTGTTGTCTGGAAAGATTGATGATGTTAGTAGACTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCTGATGCAAGGCGAGAAGGATCAGAACAACTAGGAGAGAAATTTTCCACCATTTTCAGAATAAATTGTAATTTTTTCAAAGAATAAGGAATCGTCGGATTTCAGAATAAAAAGAACATGAAAATGCCCCTACTTTCTCAGAATGTACTCGTTTTCGCTGTTGTCGCTTCTATTGCTCTGGTTTCTGGTGCTCGTGGTCGATTGCTGGGATTAGGAGGAGACGAAGGAGGACTCGGTGGACTTGTCGGAGGACTTCTTGGAGAAAATGGACTCGGTGGAATCTTGAAGGGACTTCTCGGAGACAATGAAAACGCTCTCAGTGGACTTCTGGGTATTCTCGGGGGAAATCCAGGTGGTTTGGGATTGCCAATTCTTGGAGACATCACCACACTCCCACAGTTCTTGCTTGACTTCCTCCAAAAAGTACCATCGGATATTCTTCCTCAAGTTATTGAACTTCTCTCCAACACAAGCCTTAATATCAATGAAATCACTGATAAGCTGACTGATTTGTTGTCTGGAAAGATTGATGATGTTAGTAGACTCAATTGATATTTTGCATTTCTATTATTTTCAGAACCTTCTTTCCGATCTTCTTGCCACCGTTGCCGATCTTGTTCATGAACTTCTCGATGGAATCGCCAATGTTCTTACCAGTCTTGGAAAAGTTTTCGAGGACTTGACTGATATTCTCCAGAATAAAGACCAATCCATTGCTCAACAGAAGGATGCTATTGACAAATTGAGACAGAAGTCTCCAATTGTAAGATTTGCTGTTAATGCTTTCTGTAATGTGAGCTTTTTTCAGGAAGTCGACACTATCTTCTTCATCGCGTCACAAGTGGTCAAGTCTCTCCAAAACGGGCAGGTTCCAGAAGTTTCCATTCCAGTTGATGGAGCTCCAGCTGTCTAATTTTGCCTTAACGATATTAATTGTCTTGTTTATTTGTCTTCTCTTTTATACAGGTTCATATTCTTCAACTTTGACCAGCTAGCAC</canonical>
            <polymorphic>GATCTGATGCAAGGCGAGAAGGATCAGAACAACTAGGAGAGAAATTTTCCACCATTTTCAGAATAAATTGTAATTTTTTCAAAGAATAAGGAATCGTCGGATTTCAGAATAAAAAGAACATGAAAATGCCCCTACTTTCTCAGAATGTACTCGTTTTCGCTGTTGTCGCTTCTATTGCTCTGGTTTCTGGTGCTCGTGGTCGATTGCTGGGATTAGGAGGAGACGAAGGAGGACTCGGTGGACTTGTCGGAGGACTTCTTGGAGAAAATGGACTCGGTGGAATCTTGAAGGGACTTCTCGGAGACAATGAAAACGCTCTCAGTGGACTTCTGGGTATTCTCGGGGGAAATCCAGGTGGTTTGGGATTGCCAATTCTTGGAGACATCACCACACTCCCACAGTTCTTGCTTGACTTCCTCCAAAAAGTACCATCGGATATTCTTCCTCAAGTTATTGAACTTCTCTCCAACACAAGCCTTAATATCAATGAAATCACTGARAAGCTGACTGATTTGTTGTCTGGAAAGATTGATGATGTTAGTAGACTCAATTGATATTTTGCATTTCTATTATTTTCAGAACCTTCTTTCCGATCTTCTTGCCACCGTTGCCGATCTTGTTCATGAACTTCTCGATGGAATCGCCAATGTTCTTACCAGTCTTGGAAAAGTTTTCGAGGACTTGACTGATATTCTCCAGAATAAAGACCAATCCATTGCTCAACAGAAGGATGCTATTGACAAATTGAGACAGAAGTCTCCAATTGTAAGATTTGCTGTTAATGCTTTCTGTAATGTGAGCTTTTTTCAGGAAGTCGACACTATCTTCTTCATCGCGTCACAAGTGGTCAAGTCTCTCCAAAACGGGCAGGTTCCAGAAGTTTCCATTCCAGTTGATGGAGCTCCAGCTGTCTAATTTTGCCTTAACGATATTAATTGTCTTGTTTATTTGTCTTCTCTTTTATACAGGTTCATATTCTTCAACTTTGACCAGCTAGCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGTACCATCGGATATTCTTC</pcr_primer_p1>
		<pcr_primer_p2>ACTTTTCCAAGACTGGTAAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAGTACCATCGGATATTCTTCCTCAAGTTATTGAACTTCTCTCCAACACAAGCCTTAATATCAATGAAATCACTGATAAGCTGACTGATTTGTTGTCTGGAAAGATTGATGATGTTAGTAGACTCAATTGATATTTTGCATTTCTATTATTTTCAGAACCTTCTTTCCGATCTTCTTGCCACCGTTGCCGATCTTGTTCATGAACTTCTCGATGGAATCGCCAATGTTCTTACCAGTCTTGGAAAAGT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGTACCATCGGATATTCTTCCTCAAGTTATTGAACTTCTCTCCAACACAAGCCTTAATATCAATGAAATCACTGARAAGCTGACTGATTTGTTGTCTGGAAAGATTGATGATGTTAGTAGACTCAATTGATATTTTGCATTTCTATTATTTTCAGAACCTTCTTTCCGATCTTCTTGCCACCGTTGCCGATCTTGTTCATGAACTTCTCGATGGAATCGCCAATGTTCTTACCAGTCTTGGAAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25526</snp_id>
        <super_contig>c001401072.Contig1</super_contig>
        <contig_pos>29914</contig_pos>
        <strand>-</strand>
        <context>CCTTCTTTCC[C/T]ATCTTCTTGC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGACTCAATTGATATTTTGCATTTCTATTATTTTCAGAACCTTCTTTCC</left_flank>
        <right_flank>ATCTTCTTGCCACCGTTGCCGATCTTGTTCATGAACTTCTCGATGGAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGTCGGATTTCAGAATAAAAAGAACATGAAAATGCCCCTACTTTCTCAGAATGTACTCGTTTTCGCTGTTGTCGCTTCTATTGCTCTGGTTTCTGGTGCTCGTGGTCGATTGCTGGGATTAGGAGGAGACGAAGGAGGACTCGGTGGACTTGTCGGAGGACTTCTTGGAGAAAATGGACTCGGTGGAATCTTGAAGGGACTTCTCGGAGACAATGAAAACGCTCTCAGTGGACTTCTGGGTATTCTCGGGGGAAATCCAGGTGGTTTGGGATTGCCAATTCTTGGAGACATCACCACACTCCCACAGTTCTTGCTTGACTTCCTCCAAAAAGTACCATCGGATATTCTTCCTCAAGTTATTGAACTTCTCTCCAACACAAGCCTTAATATCAATGAAATCACTGATAAGCTGACTGATTTGTTGTCTGGAAAGATTGATGATGTTAGTAGACTCAATTGATATTTTGCATTTCTATTATTTTCAGAACCTTCTTTCCGATCTTCTTGCCACCGTTGCCGATCTTGTTCATGAACTTCTCGATGGAATCGCCAATGTTCTTACCAGTCTTGGAAAAGTTTTCGAGGACTTGACTGATATTCTCCAGAATAAAGACCAATCCATTGCTCAACAGAAGGATGCTATTGACAAATTGAGACAGAAGTCTCCAATTGTAAGATTTGCTGTTAATGCTTTCTGTAATGTGAGCTTTTTTCAGGAAGTCGACACTATCTTCTTCATCGCGTCACAAGTGGTCAAGTCTCTCCAAAACGGGCAGGTTCCAGAAGTTTCCATTCCAGTTGATGGAGCTCCAGCTGTCTAATTTTGCCTTAACGATATTAATTGTCTTGTTTATTTGTCTTCTCTTTTATACAGGTTCATATTCTTCAACTTTGACCAGCTAGCACCAAAACAGAAATCGAAAAATCGGAAGAACGGTTGAATTCATCAGTTCACTTGTTCTTCAACAATGCGTTCCTTCATCATCTCCTCTGCTCTC</canonical>
            <polymorphic>ATCGTCGGATTTCAGAATAAAAAGAACATGAAAATGCCCCTACTTTCTCAGAATGTACTCGTTTTCGCTGTTGTCGCTTCTATTGCTCTGGTTTCTGGTGCTCGTGGTCGATTGCTGGGATTAGGAGGAGACGAAGGAGGACTCGGTGGACTTGTCGGAGGACTTCTTGGAGAAAATGGACTCGGTGGAATCTTGAAGGGACTTCTCGGAGACAATGAAAACGCTCTCAGTGGACTTCTGGGTATTCTCGGGGGAAATCCAGGTGGTTTGGGATTGCCAATTCTTGGAGACATCACCACACTCCCACAGTTCTTGCTTGACTTCCTCCAAAAAGTACCATCGGATATTCTTCCTCAAGTTATTGAACTTCTCTCCAACACAAGCCTTAATATCAATGAAATCACTGATAAGCTGACTGATTTGTTGTCTGGAAAGATTGATGATGTTAGTAGACTCAATTGATATTTTGCATTTCTATTATTTTCAGAACCTTCTTTCCYATCTTCTTGCCACCGTTGCCGATCTTGTTCATGAACTTCTCGATGGAATCGCCAATGTTCTTACCAGTCTTGGAAAAGTTTTCGAGGACTTGACTGATATTCTCCAGAATAAAGACCAATCCATTGCTCAACAGAAGGATGCTATTGACAAATTGAGACAGAAGTCTCCAATTGTAAGATTTGCTGTTAATGCTTTCTGTAATGTGAGCTTTTTTCAGGAAGTCGACACTATCTTCTTCATCGCGTCACAAGTGGTCAAGTCTCTCCAAAACGGGCAGGTTCCAGAAGTTTCCATTCCAGTTGATGGAGCTCCAGCTGTCTAATTTTGCCTTAACGATATTAATTGTCTTGTTTATTTGTCTTCTCTTTTATACAGGTTCATATTCTTCAACTTTGACCAGCTAGCACCAAAACAGAAATCGAAAAATCGGAAGAACGGTTGAATTCATCAGTTCACTTGTTCTTCAACAATGCGTTCCTTCATCATCTCCTCTGCTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>499 480 21</canonical_bands>
                <polymorphic_bands>520 480</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>431 144 134 107 70 51 36 13 7 7</canonical_bands>
                <polymorphic_bands>444 144 134 107 70 51 36 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGTACCATCGGATATTCTTC</pcr_primer_p1>
		<pcr_primer_p2>ACTTTTCCAAGACTGGTAAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAGTACCATCGGATATTCTTCCTCAAGTTATTGAACTTCTCTCCAACACAAGCCTTAATATCAATGAAATCACTGATAAGCTGACTGATTTGTTGTCTGGAAAGATTGATGATGTTAGTAGACTCAATTGATATTTTGCATTTCTATTATTTTCAGAACCTTCTTTCCGATCTTCTTGCCACCGTTGCCGATCTTGTTCATGAACTTCTCGATGGAATCGCCAATGTTCTTACCAGTCTTGGAAAAGT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGTACCATCGGATATTCTTCCTCAAGTTATTGAACTTCTCTCCAACACAAGCCTTAATATCAATGAAATCACTGATAAGCTGACTGATTTGTTGTCTGGAAAGATTGATGATGTTAGTAGACTCAATTGATATTTTGCATTTCTATTATTTTCAGAACCTTCTTTCCYATCTTCTTGCCACCGTTGCCGATCTTGTTCATGAACTTCTCGATGGAATCGCCAATGTTCTTACCAGTCTTGGAAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25527</snp_id>
        <super_contig>c001401072.Contig1</super_contig>
        <contig_pos>30147</contig_pos>
        <strand>-</strand>
        <context>TCGACACTAT[A/G]TTCTTCATCG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTGTTAATGCTTTCTGTAATGTGAGCTTTTTTCAGGAAGTCGACACTAT</left_flank>
        <right_flank>TTCTTCATCGCGTCACAAGTGGTCAAGTCTCTCCAAAACGGGCAGGTTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTCTGGGTATTCTCGGGGGAAATCCAGGTGGTTTGGGATTGCCAATTCTTGGAGACATCACCACACTCCCACAGTTCTTGCTTGACTTCCTCCAAAAAGTACCATCGGATATTCTTCCTCAAGTTATTGAACTTCTCTCCAACACAAGCCTTAATATCAATGAAATCACTGATAAGCTGACTGATTTGTTGTCTGGAAAGATTGATGATGTTAGTAGACTCAATTGATATTTTGCATTTCTATTATTTTCAGAACCTTCTTTCCGATCTTCTTGCCACCGTTGCCGATCTTGTTCATGAACTTCTCGATGGAATCGCCAATGTTCTTACCAGTCTTGGAAAAGTTTTCGAGGACTTGACTGATATTCTCCAGAATAAAGACCAATCCATTGCTCAACAGAAGGATGCTATTGACAAATTGAGACAGAAGTCTCCAATTGTAAGATTTGCTGTTAATGCTTTCTGTAATGTGAGCTTTTTTCAGGAAGTCGACACTATCTTCTTCATCGCGTCACAAGTGGTCAAGTCTCTCCAAAACGGGCAGGTTCCAGAAGTTTCCATTCCAGTTGATGGAGCTCCAGCTGTCTAATTTTGCCTTAACGATATTAATTGTCTTGTTTATTTGTCTTCTCTTTTATACAGGTTCATATTCTTCAACTTTGACCAGCTAGCACCAAAACAGAAATCGAAAAATCGGAAGAACGGTTGAATTCATCAGTTCACTTGTTCTTCAACAATGCGTTCCTTCATCATCTCCTCTGCTCTCTTAGTCATCTTGGCTCAATGTGGATACCCGGTTGCGGACAACGCCTACCCAACAACTCCAAGCTATCCAACTCCACCACCATCCTACCCACAACCAAAGAAGTATCCAGTGCCACCAGCAGCACCAACTTATTCGGCTGCTCCTGCATCCCTTCCAGCATCCCTCCCATCTTCTACTGATGAATCAAGCTTCTTCAGCGAGGAGGAGTCTACCACTTCTGCCACTTCTGAATG</canonical>
            <polymorphic>ACTTCTGGGTATTCTCGGGGGAAATCCAGGTGGTTTGGGATTGCCAATTCTTGGAGACATCACCACACTCCCACAGTTCTTGCTTGACTTCCTCCAAAAAGTACCATCGGATATTCTTCCTCAAGTTATTGAACTTCTCTCCAACACAAGCCTTAATATCAATGAAATCACTGATAAGCTGACTGATTTGTTGTCTGGAAAGATTGATGATGTTAGTAGACTCAATTGATATTTTGCATTTCTATTATTTTCAGAACCTTCTTTCCGATCTTCTTGCCACCGTTGCCGATCTTGTTCATGAACTTCTCGATGGAATCGCCAATGTTCTTACCAGTCTTGGAAAAGTTTTCGAGGACTTGACTGATATTCTCCAGAATAAAGACCAATCCATTGCTCAACAGAAGGATGCTATTGACAAATTGAGACAGAAGTCTCCAATTGTAAGATTTGCTGTTAATGCTTTCTGTAATGTGAGCTTTTTTCAGGAAGTCGACACTATRTTCTTCATCGCGTCACAAGTGGTCAAGTCTCTCCAAAACGGGCAGGTTCCAGAAGTTTCCATTCCAGTTGATGGAGCTCCAGCTGTCTAATTTTGCCTTAACGATATTAATTGTCTTGTTTATTTGTCTTCTCTTTTATACAGGTTCATATTCTTCAACTTTGACCAGCTAGCACCAAAACAGAAATCGAAAAATCGGAAGAACGGTTGAATTCATCAGTTCACTTGTTCTTCAACAATGCGTTCCTTCATCATCTCCTCTGCTCTCTTAGTCATCTTGGCTCAATGTGGATACCCGGTTGCGGACAACGCCTACCCAACAACTCCAAGCTATCCAACTCCACCACCATCCTACCCACAACCAAAGAAGTATCCAGTGCCACCAGCAGCACCAACTTATTCGGCTGCTCCTGCATCCCTTCCAGCATCCCTCCCATCTTCTACTGATGAATCAAGCTTCTTCAGCGAGGAGGAGTCTACCACTTCTGCCACTTCTGAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTCCAGAATAAAGACCAATC</pcr_primer_p1>
		<pcr_primer_p2>CAATTAATATCGTTAAGGCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTCTCCAGAATAAAGACCAATCCATTGCTCAACAGAAGGATGCTATTGACAAATTGAGACAGAAGTCTCCAATTGTAAGATTTGCTGTTAATGCTTTCTGTAATGTGAGCTTTTTTCAGGAAGTCGACACTATCTTCTTCATCGCGTCACAAGTGGTCAAGTCTCTCCAAAACGGGCAGGTTCCAGAAGTTTCCATTCCAGTTGATGGAGCTCCAGCTGTCTAATTTTGCCTTAACGATATTAATTG</canonical_amplicon>
		<polymorphic_amplicon>ATTCTCCAGAATAAAGACCAATCCATTGCTCAACAGAAGGATGCTATTGACAAATTGAGACAGAAGTCTCCAATTGTAAGATTTGCTGTTAATGCTTTCTGTAATGTGAGCTTTTTTCAGGAAGTCGACACTATRTTCTTCATCGCGTCACAAGTGGTCAAGTCTCTCCAAAACGGGCAGGTTCCAGAAGTTTCCATTCCAGTTGATGGAGCTCCAGCTGTCTAATTTTGCCTTAACGATATTAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25528</snp_id>
        <super_contig>c001401072.Contig1</super_contig>
        <contig_pos>30159</contig_pos>
        <strand>-</strand>
        <context>TCTTCATCGC[C/T]TCACAAGTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTGTAATGTGAGCTTTTTTCAGGAAGTCGACACTATCTTCTTCATCGC</left_flank>
        <right_flank>TCACAAGTGGTCAAGTCTCTCCAAAACGGGCAGGTTCCAGAAGTTTCCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCGGGGGAAATCCAGGTGGTTTGGGATTGCCAATTCTTGGAGACATCACCACACTCCCACAGTTCTTGCTTGACTTCCTCCAAAAAGTACCATCGGATATTCTTCCTCAAGTTATTGAACTTCTCTCCAACACAAGCCTTAATATCAATGAAATCACTGATAAGCTGACTGATTTGTTGTCTGGAAAGATTGATGATGTTAGTAGACTCAATTGATATTTTGCATTTCTATTATTTTCAGAACCTTCTTTCCGATCTTCTTGCCACCGTTGCCGATCTTGTTCATGAACTTCTCGATGGAATCGCCAATGTTCTTACCAGTCTTGGAAAAGTTTTCGAGGACTTGACTGATATTCTCCAGAATAAAGACCAATCCATTGCTCAACAGAAGGATGCTATTGACAAATTGAGACAGAAGTCTCCAATTGTAAGATTTGCTGTTAATGCTTTCTGTAATGTGAGCTTTTTTCAGGAAGTCGACACTATCTTCTTCATCGCGTCACAAGTGGTCAAGTCTCTCCAAAACGGGCAGGTTCCAGAAGTTTCCATTCCAGTTGATGGAGCTCCAGCTGTCTAATTTTGCCTTAACGATATTAATTGTCTTGTTTATTTGTCTTCTCTTTTATACAGGTTCATATTCTTCAACTTTGACCAGCTAGCACCAAAACAGAAATCGAAAAATCGGAAGAACGGTTGAATTCATCAGTTCACTTGTTCTTCAACAATGCGTTCCTTCATCATCTCCTCTGCTCTCTTAGTCATCTTGGCTCAATGTGGATACCCGGTTGCGGACAACGCCTACCCAACAACTCCAAGCTATCCAACTCCACCACCATCCTACCCACAACCAAAGAAGTATCCAGTGCCACCAGCAGCACCAACTTATTCGGCTGCTCCTGCATCCCTTCCAGCATCCCTCCCATCTTCTACTGATGAATCAAGCTTCTTCAGCGAGGAGGAGTCTACCACTTCTGCCACTTCTGAATGTCAGAAACCCTT</canonical>
            <polymorphic>TCTCGGGGGAAATCCAGGTGGTTTGGGATTGCCAATTCTTGGAGACATCACCACACTCCCACAGTTCTTGCTTGACTTCCTCCAAAAAGTACCATCGGATATTCTTCCTCAAGTTATTGAACTTCTCTCCAACACAAGCCTTAATATCAATGAAATCACTGATAAGCTGACTGATTTGTTGTCTGGAAAGATTGATGATGTTAGTAGACTCAATTGATATTTTGCATTTCTATTATTTTCAGAACCTTCTTTCCGATCTTCTTGCCACCGTTGCCGATCTTGTTCATGAACTTCTCGATGGAATCGCCAATGTTCTTACCAGTCTTGGAAAAGTTTTCGAGGACTTGACTGATATTCTCCAGAATAAAGACCAATCCATTGCTCAACAGAAGGATGCTATTGACAAATTGAGACAGAAGTCTCCAATTGTAAGATTTGCTGTTAATGCTTTCTGTAATGTGAGCTTTTTTCAGGAAGTCGACACTATCTTCTTCATCGCYTCACAAGTGGTCAAGTCTCTCCAAAACGGGCAGGTTCCAGAAGTTTCCATTCCAGTTGATGGAGCTCCAGCTGTCTAATTTTGCCTTAACGATATTAATTGTCTTGTTTATTTGTCTTCTCTTTTATACAGGTTCATATTCTTCAACTTTGACCAGCTAGCACCAAAACAGAAATCGAAAAATCGGAAGAACGGTTGAATTCATCAGTTCACTTGTTCTTCAACAATGCGTTCCTTCATCATCTCCTCTGCTCTCTTAGTCATCTTGGCTCAATGTGGATACCCGGTTGCGGACAACGCCTACCCAACAACTCCAAGCTATCCAACTCCACCACCATCCTACCCACAACCAAAGAAGTATCCAGTGCCACCAGCAGCACCAACTTATTCGGCTGCTCCTGCATCCCTTCCAGCATCCCTCCCATCTTCTACTGATGAATCAAGCTTCTTCAGCGAGGAGGAGTCTACCACTTCTGCCACTTCTGAATGTCAGAAACCCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTCCAGAATAAAGACCAATC</pcr_primer_p1>
		<pcr_primer_p2>CAATTAATATCGTTAAGGCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTCTCCAGAATAAAGACCAATCCATTGCTCAACAGAAGGATGCTATTGACAAATTGAGACAGAAGTCTCCAATTGTAAGATTTGCTGTTAATGCTTTCTGTAATGTGAGCTTTTTTCAGGAAGTCGACACTATCTTCTTCATCGCGTCACAAGTGGTCAAGTCTCTCCAAAACGGGCAGGTTCCAGAAGTTTCCATTCCAGTTGATGGAGCTCCAGCTGTCTAATTTTGCCTTAACGATATTAATTG</canonical_amplicon>
		<polymorphic_amplicon>ATTCTCCAGAATAAAGACCAATCCATTGCTCAACAGAAGGATGCTATTGACAAATTGAGACAGAAGTCTCCAATTGTAAGATTTGCTGTTAATGCTTTCTGTAATGTGAGCTTTTTTCAGGAAGTCGACACTATCTTCTTCATCGCYTCACAAGTGGTCAAGTCTCTCCAAAACGGGCAGGTTCCAGAAGTTTCCATTCCAGTTGATGGAGCTCCAGCTGTCTAATTTTGCCTTAACGATATTAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25529</snp_id>
        <super_contig>c001401072.Contig1</super_contig>
        <contig_pos>30189</contig_pos>
        <strand>-</strand>
        <context>TCCAAAACGG[C/T]CAGGTTCCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACACTATCTTCTTCATCGCGTCACAAGTGGTCAAGTCTCTCCAAAACGG</left_flank>
        <right_flank>CAGGTTCCAGAAGTTTCCATTCCAGTTGATGGAGCTCCAGCTGTCTAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCAATTCTTGGAGACATCACCACACTCCCACAGTTCTTGCTTGACTTCCTCCAAAAAGTACCATCGGATATTCTTCCTCAAGTTATTGAACTTCTCTCCAACACAAGCCTTAATATCAATGAAATCACTGATAAGCTGACTGATTTGTTGTCTGGAAAGATTGATGATGTTAGTAGACTCAATTGATATTTTGCATTTCTATTATTTTCAGAACCTTCTTTCCGATCTTCTTGCCACCGTTGCCGATCTTGTTCATGAACTTCTCGATGGAATCGCCAATGTTCTTACCAGTCTTGGAAAAGTTTTCGAGGACTTGACTGATATTCTCCAGAATAAAGACCAATCCATTGCTCAACAGAAGGATGCTATTGACAAATTGAGACAGAAGTCTCCAATTGTAAGATTTGCTGTTAATGCTTTCTGTAATGTGAGCTTTTTTCAGGAAGTCGACACTATCTTCTTCATCGCGTCACAAGTGGTCAAGTCTCTCCAAAACGGGCAGGTTCCAGAAGTTTCCATTCCAGTTGATGGAGCTCCAGCTGTCTAATTTTGCCTTAACGATATTAATTGTCTTGTTTATTTGTCTTCTCTTTTATACAGGTTCATATTCTTCAACTTTGACCAGCTAGCACCAAAACAGAAATCGAAAAATCGGAAGAACGGTTGAATTCATCAGTTCACTTGTTCTTCAACAATGCGTTCCTTCATCATCTCCTCTGCTCTCTTAGTCATCTTGGCTCAATGTGGATACCCGGTTGCGGACAACGCCTACCCAACAACTCCAAGCTATCCAACTCCACCACCATCCTACCCACAACCAAAGAAGTATCCAGTGCCACCAGCAGCACCAACTTATTCGGCTGCTCCTGCATCCCTTCCAGCATCCCTCCCATCTTCTACTGATGAATCAAGCTTCTTCAGCGAGGAGGAGTCTACCACTTCTGCCACTTCTGAATGTCAGAAACCCTTTATAATTTCGTAATACGTATCAATTTTCAG</canonical>
            <polymorphic>GCCAATTCTTGGAGACATCACCACACTCCCACAGTTCTTGCTTGACTTCCTCCAAAAAGTACCATCGGATATTCTTCCTCAAGTTATTGAACTTCTCTCCAACACAAGCCTTAATATCAATGAAATCACTGATAAGCTGACTGATTTGTTGTCTGGAAAGATTGATGATGTTAGTAGACTCAATTGATATTTTGCATTTCTATTATTTTCAGAACCTTCTTTCCGATCTTCTTGCCACCGTTGCCGATCTTGTTCATGAACTTCTCGATGGAATCGCCAATGTTCTTACCAGTCTTGGAAAAGTTTTCGAGGACTTGACTGATATTCTCCAGAATAAAGACCAATCCATTGCTCAACAGAAGGATGCTATTGACAAATTGAGACAGAAGTCTCCAATTGTAAGATTTGCTGTTAATGCTTTCTGTAATGTGAGCTTTTTTCAGGAAGTCGACACTATCTTCTTCATCGCGTCACAAGTGGTCAAGTCTCTCCAAAACGGYCAGGTTCCAGAAGTTTCCATTCCAGTTGATGGAGCTCCAGCTGTCTAATTTTGCCTTAACGATATTAATTGTCTTGTTTATTTGTCTTCTCTTTTATACAGGTTCATATTCTTCAACTTTGACCAGCTAGCACCAAAACAGAAATCGAAAAATCGGAAGAACGGTTGAATTCATCAGTTCACTTGTTCTTCAACAATGCGTTCCTTCATCATCTCCTCTGCTCTCTTAGTCATCTTGGCTCAATGTGGATACCCGGTTGCGGACAACGCCTACCCAACAACTCCAAGCTATCCAACTCCACCACCATCCTACCCACAACCAAAGAAGTATCCAGTGCCACCAGCAGCACCAACTTATTCGGCTGCTCCTGCATCCCTTCCAGCATCCCTCCCATCTTCTACTGATGAATCAAGCTTCTTCAGCGAGGAGGAGTCTACCACTTCTGCCACTTCTGAATGTCAGAAACCCTTTATAATTTCGTAATACGTATCAATTTTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTCCAGAATAAAGACCAATC</pcr_primer_p1>
		<pcr_primer_p2>CAATTAATATCGTTAAGGCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTCTCCAGAATAAAGACCAATCCATTGCTCAACAGAAGGATGCTATTGACAAATTGAGACAGAAGTCTCCAATTGTAAGATTTGCTGTTAATGCTTTCTGTAATGTGAGCTTTTTTCAGGAAGTCGACACTATCTTCTTCATCGCGTCACAAGTGGTCAAGTCTCTCCAAAACGGGCAGGTTCCAGAAGTTTCCATTCCAGTTGATGGAGCTCCAGCTGTCTAATTTTGCCTTAACGATATTAATTG</canonical_amplicon>
		<polymorphic_amplicon>ATTCTCCAGAATAAAGACCAATCCATTGCTCAACAGAAGGATGCTATTGACAAATTGAGACAGAAGTCTCCAATTGTAAGATTTGCTGTTAATGCTTTCTGTAATGTGAGCTTTTTTCAGGAAGTCGACACTATCTTCTTCATCGCGTCACAAGTGGTCAAGTCTCTCCAAAACGGYCAGGTTCCAGAAGTTTCCATTCCAGTTGATGGAGCTCCAGCTGTCTAATTTTGCCTTAACGATATTAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25530</snp_id>
        <super_contig>c001401072.Contig1</super_contig>
        <contig_pos>32336</contig_pos>
        <strand>+</strand>
        <context>GCTTGACTAG[A/G]TTTTTTTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATACTGTAGTTTTACCAACATCTGTTGGTCCCACTGAAAGCTTGACTAG</left_flank>
        <right_flank>TTTTTTTTGAAGATTACAACACCAAGATACTGTACCTAACAGAATTCTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCAAATGCGGCTGCTGATTTCAGAATACATGTGTAGCCGCCTCCATCAACCCATCCACAAGTGTTAACTATCATTCCACCTAGTTTAGCTGCTGGATTCTCTTCTATCTTAAATAGAATTTTCGAGATTACATTCTCTGTATTTTATGGTCATACCTGACCATTCATCGTGGTGGCAAGCGCCTTGAGGAGGGCTTCGTAAAGTGGAAGATTCTCTCCTGGAGATGTGTGTCCGAACTAAAATATGTTCTTAAATCCAACAAAAGAAACTAAGCTTACATTTAAAACCAAAGGCATGTTCCTCTCAAACCCATCAACAAAATCTGCGGTTTTTTGTACCAACATAGCGCTAATGGATCCGGGAACCGATATATTGTTCTGTCCAACATCAAGATCCACCAAAATGGGAGTTCCTCCTTTTCGAACTGCATAGTTACACAGGATTCGAGATACTGTAGTTTTACCAACATCTGTTGGTCCCACTGAAAGCTTGACTAGTTTTTTTTTGAAGATTACAACACCAAGATACTGTACCTAACAGAATTCTTGGCCCTCTCTGGGTGACTCCAGTGTCTTTGCCGCTTGCCTCTCGATCTTTCCGTAGTTTTTCTAGAGTTGCATGGATGTTCAGGTAGACGACCATTGCAGTACTCTCAGATGATATATAGGCACTTTCTGTACCTCCTTTTATTTCGATAGTGCCACCAGTCCATGAGAAAACTGCTGCGCGGAACTCTGGAAAATCATTTTTTTAAGATTTGAAAGTGCTTATGGGAGCTTCACAAGGATTTGAACTTGCGGGATAGTAAAATCCGTAATAGAAGGGTCCCTAACTTTTAGCCGATTCATCTCGGTTACTGTCAAAGATATCAAAAAGTTGTCAATTGATAAATTGTTTATCATATCCTGACCAACATTTTATCCGTTGAGACTTTTTTGATATCTTGCATAGAAGGCGAGATAATTGAGCTCAAACTTGACAGTGTAAAGGCCCACTGG</canonical>
            <polymorphic>CTTCAAATGCGGCTGCTGATTTCAGAATACATGTGTAGCCGCCTCCATCAACCCATCCACAAGTGTTAACTATCATTCCACCTAGTTTAGCTGCTGGATTCTCTTCTATCTTAAATAGAATTTTCGAGATTACATTCTCTGTATTTTATGGTCATACCTGACCATTCATCGTGGTGGCAAGCGCCTTGAGGAGGGCTTCGTAAAGTGGAAGATTCTCTCCTGGAGATGTGTGTCCGAACTAAAATATGTTCTTAAATCCAACAAAAGAAACTAAGCTTACATTTAAAACCAAAGGCATGTTCCTCTCAAACCCATCAACAAAATCTGCGGTTTTTTGTACCAACATAGCGCTAATGGATCCGGGAACCGATATATTGTTCTGTCCAACATCAAGATCCACCAAAATGGGAGTTCCTCCTTTTCGAACTGCATAGTTACACAGGATTCGAGATACTGTAGTTTTACCAACATCTGTTGGTCCCACTGAAAGCTTGACTAGRTTTTTTTTGAAGATTACAACACCAAGATACTGTACCTAACAGAATTCTTGGCCCTCTCTGGGTGACTCCAGTGTCTTTGCCGCTTGCCTCTCGATCTTTCCGTAGTTTTTCTAGAGTTGCATGGATGTTCAGGTAGACGACCATTGCAGTACTCTCAGATGATATATAGGCACTTTCTGTACCTCCTTTTATTTCGATAGTGCCACCAGTCCATGAGAAAACTGCTGCGCGGAACTCTGGAAAATCATTTTTTTAAGATTTGAAAGTGCTTATGGGAGCTTCACAAGGATTTGAACTTGCGGGATAGTAAAATCCGTAATAGAAGGGTCCCTAACTTTTAGCCGATTCATCTCGGTTACTGTCAAAGATATCAAAAAGTTGTCAATTGATAAATTGTTTATCATATCCTGACCAACATTTTATCCGTTGAGACTTTTTTGATATCTTGCATAGAAGGCGAGATAATTGAGCTCAAACTTGACAGTGTAAAGGCCCACTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACTAGT</site>
                <isoschizomers>
                    <enzyme>AhlI</enzyme>
                    <enzyme>BcuI</enzyme>
                    <enzyme>SpeI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATATTGTTCTGTCCAACATCAA</pcr_primer_p1>
		<pcr_primer_p2>AACTCTAGAAAAACTACGGAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TATATTGTTCTGTCCAACATCAAGATCCACCAAAATGGGAGTTCCTCCTTTTCGAACTGCATAGTTACACAGGATTCGAGATACTGTAGTTTTACCAACATCTGTTGGTCCCACTGAAAGCTTGACTAGTTTTTTTTTGAAGATTACAACACCAAGATACTGTACCTAACAGAATTCTTGGCCCTCTCTGGGTGACTCCAGTGTCTTTGCCGCTTGCCTCTCGATCTTTCCGTAGTTTTTCTAGAGTT</canonical_amplicon>
		<polymorphic_amplicon>TATATTGTTCTGTCCAACATCAAGATCCACCAAAATGGGAGTTCCTCCTTTTCGAACTGCATAGTTACACAGGATTCGAGATACTGTAGTTTTACCAACATCTGTTGGTCCCACTGAAAGCTTGACTAGRTTTTTTTTGAAGATTACAACACCAAGATACTGTACCTAACAGAATTCTTGGCCCTCTCTGGGTGACTCCAGTGTCTTTGCCGCTTGCCTCTCGATCTTTCCGTAGTTTTTCTAGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25531</snp_id>
        <super_contig>c001401072.Contig1</super_contig>
        <contig_pos>33371</contig_pos>
        <strand>+</strand>
        <context>GTCATTGATT[A/G]CATRTTCGAK</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGCAATACTTGGCTTCTAGGAAAGAAGAATGGGTGTGACGTCATTGATT</left_flank>
        <right_flank>CATATTCGATAGTTTATTTACAAAAATTATGTACAAGACAAATAAACAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCCCTTTACTTCTTCAAAAAAAAAACTCACTGGCTGGAAAAACATATTTCTGATTTGGTATCAGTTCGGTCCCGAAGATTTCGACATATCCATTTAAAAGTTCCAAGGAAATGTCTGAACAATTGTTGGCGACAAATCTCAATTCACAGCCTGAGTTGAGATCGAACCTTTGAACCCGTTCGGTAAACATTTTGAGATCTGAAGATTTGAATGTTAAAACAAGCGGGAAATTTGAAAAAAAGACGCATGGGGAAAAAAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAAAAAATCAATCACTCTAGAGGTCAGTTGTGACATTAAATGGAGGAAAAATGCGCTCGTTTTTTGAAGCAAAGGAGGACTGGTGGATGAACGCGTCGCGTTTACCAAAATTAATCAATAATGAGCAATACTTGGCTTCTAGGAAAGAAGAATGGGTGTGACGTCATTGATTACATATTCGATAGTTTATTTACAAAAATTATGTACAAGACAAATAAACAAGACAATTAATATCGTTAAGGCAAAATTAGACAGCTGGAGCTCCATCAATGGAATGGAAACTTCTGGAACCTGCCCGTTTTGGAGAGACTTGACCACTTGTGACGCGATGAAGAAGATAGTGTCGACTTCCTGAAAAAAGCTCACATTACAGAAAGCATTAACAGCAAATCTTACAATTGGAGACTTCTGTCTCAATTTGTCAATAGCATCCTTCTGTTGAGCAATGGATTGGTCTTTATTCTGGAGAATATCAGTCAAGTCCTCGAAAACTTTTCCAAGACTGGTAAGAACATTGGCGATTCCATCGAGAAGTTCATGAACAAGATCGGCAACGGTGGCAAGAAGATCGGAAAGAAGGTTCTGAAAATAATAGAAATGCAAAATATCAATTGAGTCTACTAACATCATCAATCTTTCCAGACAACAAATCAGTCAGCTTATCAGTGATTTC</canonical>
            <polymorphic>TGCCCTTTACTTCTTCAAAAAAAAAACTCACTGGCTGGAAAAACATATTTCTGATTTGGTATCAGTTCGGTCCCGAAGATTTCGACATATCCATTTAAAAGTTCCAAGGAAATGTCTGAACAATTGTTGGCGACAAATCTCAATTCACAGCCTGAGTTGAGATCGAACCTTTGAACCCGTTCGGTAAACATTTTGAGATCTGAAGATTTGAATGTTAAAACAAGCGGGAAATTTGAAAAAAAGACGCATGGGGAAAAAAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAAAAAATCAATCACTCTAGAGGTCAGTTGTGACATTAAATGGAGGAAAAATGCGCTCGTTTTTTGAAGCAAAGGAGGACTGGTGGATGAACGCGTCGCGTTTACCAAAATTAATCAATAATGAGCAATACTTGGCTTCTAGGAAAGAAGAATGGGTGTGACGTCATTGATTRCATATTCGATAGTTTATTTACAAAAATTATGTACAAGACAAATAAACAAGACAATTAATATCGTTAAGGCAAAATTAGACAGCTGGAGCTCCATCAATGGAATGGAAACTTCTGGAACCTGCCCGTTTTGGAGAGACTTGACCACTTGTGACGCGATGAAGAAGATAGTGTCGACTTCCTGAAAAAAGCTCACATTACAGAAAGCATTAACAGCAAATCTTACAATTGGAGACTTCTGTCTCAATTTGTCAATAGCATCCTTCTGTTGAGCAATGGATTGGTCTTTATTCTGGAGAATATCAGTCAAGTCCTCGAAAACTTTTCCAAGACTGGTAAGAACATTGGCGATTCCATCGAGAAGTTCATGAACAAGATCGGCAACGGTGGCAAGAAGATCGGAAAGAAGGTTCTGAAAATAATAGAAATGCAAAATATCAATTGAGTCTACTAACATCATCAATCTTTCCAGACAACAAATCAGTCAGCTTATCAGTGATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCACTCTAGAGGTCAGTTGTG</pcr_primer_p1>
		<pcr_primer_p2>AGCTGTCTAATTTTGCCTTAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATCACTCTAGAGGTCAGTTGTGACATTAAATGGAGGAAAAATGCGCTCGTTTTTTGAAGCAAAGGAGGACTGGTGGATGAACGCGTCGCGTTTACCAAAATTAATCAATAATGAGCAATACTTGGCTTCTAGGAAAGAAGAATGGGTGTGACGTCATTGATTACATATTCGATAGTTTATTTACAAAAATTATGTACAAGACAAATAAACAAGACAATTAATATCGTTAAGGCAAAATTAGACAGCT</canonical_amplicon>
		<polymorphic_amplicon>AATCACTCTAGAGGTCAGTTGTGACATTAAATGGAGGAAAAATGCGCTCGTTTTTTGAAGCAAAGGAGGACTGGTGGATGAACGCGTCGCGTTTACCAAAATTAATCAATAATGAGCAATACTTGGCTTCTAGGAAAGAAGAATGGGTGTGACGTCATTGATTRCATATTCGATAGTTTATTTACAAAAATTATGTACAAGACAAATAAACAAGACAATTAATATCGTTAAGGCAAAATTAGACAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25532</snp_id>
        <super_contig>c001401072.Contig1</super_contig>
        <contig_pos>33375</contig_pos>
        <strand>+</strand>
        <context>TTGATTRCAT[A/G]TTCGAKRGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATACTTGGCTTCTAGGAAAGAAGAATGGGTGTGACGTCATTGATTACAT</left_flank>
        <right_flank>TTCGATAGTTTATTTACAAAAATTATGTACAAGACAAATAAACAAGACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTACTTCTTCAAAAAAAAAACTCACTGGCTGGAAAAACATATTTCTGATTTGGTATCAGTTCGGTCCCGAAGATTTCGACATATCCATTTAAAAGTTCCAAGGAAATGTCTGAACAATTGTTGGCGACAAATCTCAATTCACAGCCTGAGTTGAGATCGAACCTTTGAACCCGTTCGGTAAACATTTTGAGATCTGAAGATTTGAATGTTAAAACAAGCGGGAAATTTGAAAAAAAGACGCATGGGGAAAAAAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAAAAAATCAATCACTCTAGAGGTCAGTTGTGACATTAAATGGAGGAAAAATGCGCTCGTTTTTTGAAGCAAAGGAGGACTGGTGGATGAACGCGTCGCGTTTACCAAAATTAATCAATAATGAGCAATACTTGGCTTCTAGGAAAGAAGAATGGGTGTGACGTCATTGATTACATATTCGATAGTTTATTTACAAAAATTATGTACAAGACAAATAAACAAGACAATTAATATCGTTAAGGCAAAATTAGACAGCTGGAGCTCCATCAATGGAATGGAAACTTCTGGAACCTGCCCGTTTTGGAGAGACTTGACCACTTGTGACGCGATGAAGAAGATAGTGTCGACTTCCTGAAAAAAGCTCACATTACAGAAAGCATTAACAGCAAATCTTACAATTGGAGACTTCTGTCTCAATTTGTCAATAGCATCCTTCTGTTGAGCAATGGATTGGTCTTTATTCTGGAGAATATCAGTCAAGTCCTCGAAAACTTTTCCAAGACTGGTAAGAACATTGGCGATTCCATCGAGAAGTTCATGAACAAGATCGGCAACGGTGGCAAGAAGATCGGAAAGAAGGTTCTGAAAATAATAGAAATGCAAAATATCAATTGAGTCTACTAACATCATCAATCTTTCCAGACAACAAATCAGTCAGCTTATCAGTGATTTCATTG</canonical>
            <polymorphic>CTTTACTTCTTCAAAAAAAAAACTCACTGGCTGGAAAAACATATTTCTGATTTGGTATCAGTTCGGTCCCGAAGATTTCGACATATCCATTTAAAAGTTCCAAGGAAATGTCTGAACAATTGTTGGCGACAAATCTCAATTCACAGCCTGAGTTGAGATCGAACCTTTGAACCCGTTCGGTAAACATTTTGAGATCTGAAGATTTGAATGTTAAAACAAGCGGGAAATTTGAAAAAAAGACGCATGGGGAAAAAAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAAAAAATCAATCACTCTAGAGGTCAGTTGTGACATTAAATGGAGGAAAAATGCGCTCGTTTTTTGAAGCAAAGGAGGACTGGTGGATGAACGCGTCGCGTTTACCAAAATTAATCAATAATGAGCAATACTTGGCTTCTAGGAAAGAAGAATGGGTGTGACGTCATTGATTACATRTTCGATAGTTTATTTACAAAAATTATGTACAAGACAAATAAACAAGACAATTAATATCGTTAAGGCAAAATTAGACAGCTGGAGCTCCATCAATGGAATGGAAACTTCTGGAACCTGCCCGTTTTGGAGAGACTTGACCACTTGTGACGCGATGAAGAAGATAGTGTCGACTTCCTGAAAAAAGCTCACATTACAGAAAGCATTAACAGCAAATCTTACAATTGGAGACTTCTGTCTCAATTTGTCAATAGCATCCTTCTGTTGAGCAATGGATTGGTCTTTATTCTGGAGAATATCAGTCAAGTCCTCGAAAACTTTTCCAAGACTGGTAAGAACATTGGCGATTCCATCGAGAAGTTCATGAACAAGATCGGCAACGGTGGCAAGAAGATCGGAAAGAAGGTTCTGAAAATAATAGAAATGCAAAATATCAATTGAGTCTACTAACATCATCAATCTTTCCAGACAACAAATCAGTCAGCTTATCAGTGATTTCATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCACTCTAGAGGTCAGTTGTG</pcr_primer_p1>
		<pcr_primer_p2>AGCTGTCTAATTTTGCCTTAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATCACTCTAGAGGTCAGTTGTGACATTAAATGGAGGAAAAATGCGCTCGTTTTTTGAAGCAAAGGAGGACTGGTGGATGAACGCGTCGCGTTTACCAAAATTAATCAATAATGAGCAATACTTGGCTTCTAGGAAAGAAGAATGGGTGTGACGTCATTGATTACATATTCGATAGTTTATTTACAAAAATTATGTACAAGACAAATAAACAAGACAATTAATATCGTTAAGGCAAAATTAGACAGCT</canonical_amplicon>
		<polymorphic_amplicon>AATCACTCTAGAGGTCAGTTGTGACATTAAATGGAGGAAAAATGCGCTCGTTTTTTGAAGCAAAGGAGGACTGGTGGATGAACGCGTCGCGTTTACCAAAATTAATCAATAATGAGCAATACTTGGCTTCTAGGAAAGAAGAATGGGTGTGACGTCATTGATTACATRTTCGATAGTTTATTTACAAAAATTATGTACAAGACAAATAAACAAGACAATTAATATCGTTAAGGCAAAATTAGACAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25533</snp_id>
        <super_contig>c001401072.Contig1</super_contig>
        <contig_pos>33381</contig_pos>
        <strand>+</strand>
        <context>RCATRTTCGA[G/T]RGTTTATTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGGCTTCTAGGAAAGAAGAATGGGTGTGACGTCATTGATTACATATTCGA</left_flank>
        <right_flank>AGTTTATTTACAAAAATTATGTACAAGACAAATAAACAAGACAATTAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTCAAAAAAAAAACTCACTGGCTGGAAAAACATATTTCTGATTTGGTATCAGTTCGGTCCCGAAGATTTCGACATATCCATTTAAAAGTTCCAAGGAAATGTCTGAACAATTGTTGGCGACAAATCTCAATTCACAGCCTGAGTTGAGATCGAACCTTTGAACCCGTTCGGTAAACATTTTGAGATCTGAAGATTTGAATGTTAAAACAAGCGGGAAATTTGAAAAAAAGACGCATGGGGAAAAAAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAAAAAATCAATCACTCTAGAGGTCAGTTGTGACATTAAATGGAGGAAAAATGCGCTCGTTTTTTGAAGCAAAGGAGGACTGGTGGATGAACGCGTCGCGTTTACCAAAATTAATCAATAATGAGCAATACTTGGCTTCTAGGAAAGAAGAATGGGTGTGACGTCATTGATTACATATTCGATAGTTTATTTACAAAAATTATGTACAAGACAAATAAACAAGACAATTAATATCGTTAAGGCAAAATTAGACAGCTGGAGCTCCATCAATGGAATGGAAACTTCTGGAACCTGCCCGTTTTGGAGAGACTTGACCACTTGTGACGCGATGAAGAAGATAGTGTCGACTTCCTGAAAAAAGCTCACATTACAGAAAGCATTAACAGCAAATCTTACAATTGGAGACTTCTGTCTCAATTTGTCAATAGCATCCTTCTGTTGAGCAATGGATTGGTCTTTATTCTGGAGAATATCAGTCAAGTCCTCGAAAACTTTTCCAAGACTGGTAAGAACATTGGCGATTCCATCGAGAAGTTCATGAACAAGATCGGCAACGGTGGCAAGAAGATCGGAAAGAAGGTTCTGAAAATAATAGAAATGCAAAATATCAATTGAGTCTACTAACATCATCAATCTTTCCAGACAACAAATCAGTCAGCTTATCAGTGATTTCATTGATATTA</canonical>
            <polymorphic>TTCTTCAAAAAAAAAACTCACTGGCTGGAAAAACATATTTCTGATTTGGTATCAGTTCGGTCCCGAAGATTTCGACATATCCATTTAAAAGTTCCAAGGAAATGTCTGAACAATTGTTGGCGACAAATCTCAATTCACAGCCTGAGTTGAGATCGAACCTTTGAACCCGTTCGGTAAACATTTTGAGATCTGAAGATTTGAATGTTAAAACAAGCGGGAAATTTGAAAAAAAGACGCATGGGGAAAAAAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAAAAAATCAATCACTCTAGAGGTCAGTTGTGACATTAAATGGAGGAAAAATGCGCTCGTTTTTTGAAGCAAAGGAGGACTGGTGGATGAACGCGTCGCGTTTACCAAAATTAATCAATAATGAGCAATACTTGGCTTCTAGGAAAGAAGAATGGGTGTGACGTCATTGATTACATATTCGAKAGTTTATTTACAAAAATTATGTACAAGACAAATAAACAAGACAATTAATATCGTTAAGGCAAAATTAGACAGCTGGAGCTCCATCAATGGAATGGAAACTTCTGGAACCTGCCCGTTTTGGAGAGACTTGACCACTTGTGACGCGATGAAGAAGATAGTGTCGACTTCCTGAAAAAAGCTCACATTACAGAAAGCATTAACAGCAAATCTTACAATTGGAGACTTCTGTCTCAATTTGTCAATAGCATCCTTCTGTTGAGCAATGGATTGGTCTTTATTCTGGAGAATATCAGTCAAGTCCTCGAAAACTTTTCCAAGACTGGTAAGAACATTGGCGATTCCATCGAGAAGTTCATGAACAAGATCGGCAACGGTGGCAAGAAGATCGGAAAGAAGGTTCTGAAAATAATAGAAATGCAAAATATCAATTGAGTCTACTAACATCATCAATCTTTCCAGACAACAAATCAGTCAGCTTATCAGTGATTTCATTGATATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCACTCTAGAGGTCAGTTGTG</pcr_primer_p1>
		<pcr_primer_p2>AGCTGTCTAATTTTGCCTTAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATCACTCTAGAGGTCAGTTGTGACATTAAATGGAGGAAAAATGCGCTCGTTTTTTGAAGCAAAGGAGGACTGGTGGATGAACGCGTCGCGTTTACCAAAATTAATCAATAATGAGCAATACTTGGCTTCTAGGAAAGAAGAATGGGTGTGACGTCATTGATTACATATTCGATAGTTTATTTACAAAAATTATGTACAAGACAAATAAACAAGACAATTAATATCGTTAAGGCAAAATTAGACAGCT</canonical_amplicon>
		<polymorphic_amplicon>AATCACTCTAGAGGTCAGTTGTGACATTAAATGGAGGAAAAATGCGCTCGTTTTTTGAAGCAAAGGAGGACTGGTGGATGAACGCGTCGCGTTTACCAAAATTAATCAATAATGAGCAATACTTGGCTTCTAGGAAAGAAGAATGGGTGTGACGTCATTGATTACATATTCGAKAGTTTATTTACAAAAATTATGTACAAGACAAATAAACAAGACAATTAATATCGTTAAGGCAAAATTAGACAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25534</snp_id>
        <super_contig>c001401072.Contig1</super_contig>
        <contig_pos>33382</contig_pos>
        <strand>+</strand>
        <context>CATRTTCGAK[A/G]GTTTATTTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGCTTCTAGGAAAGAAGAATGGGTGTGACGTCATTGATTACATATTCGAT</left_flank>
        <right_flank>GTTTATTTACAAAAATTATGTACAAGACAAATAAACAAGACAATTAATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCAAAAAAAAAACTCACTGGCTGGAAAAACATATTTCTGATTTGGTATCAGTTCGGTCCCGAAGATTTCGACATATCCATTTAAAAGTTCCAAGGAAATGTCTGAACAATTGTTGGCGACAAATCTCAATTCACAGCCTGAGTTGAGATCGAACCTTTGAACCCGTTCGGTAAACATTTTGAGATCTGAAGATTTGAATGTTAAAACAAGCGGGAAATTTGAAAAAAAGACGCATGGGGAAAAAAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAAAAAATCAATCACTCTAGAGGTCAGTTGTGACATTAAATGGAGGAAAAATGCGCTCGTTTTTTGAAGCAAAGGAGGACTGGTGGATGAACGCGTCGCGTTTACCAAAATTAATCAATAATGAGCAATACTTGGCTTCTAGGAAAGAAGAATGGGTGTGACGTCATTGATTACATATTCGATAGTTTATTTACAAAAATTATGTACAAGACAAATAAACAAGACAATTAATATCGTTAAGGCAAAATTAGACAGCTGGAGCTCCATCAATGGAATGGAAACTTCTGGAACCTGCCCGTTTTGGAGAGACTTGACCACTTGTGACGCGATGAAGAAGATAGTGTCGACTTCCTGAAAAAAGCTCACATTACAGAAAGCATTAACAGCAAATCTTACAATTGGAGACTTCTGTCTCAATTTGTCAATAGCATCCTTCTGTTGAGCAATGGATTGGTCTTTATTCTGGAGAATATCAGTCAAGTCCTCGAAAACTTTTCCAAGACTGGTAAGAACATTGGCGATTCCATCGAGAAGTTCATGAACAAGATCGGCAACGGTGGCAAGAAGATCGGAAAGAAGGTTCTGAAAATAATAGAAATGCAAAATATCAATTGAGTCTACTAACATCATCAATCTTTCCAGACAACAAATCAGTCAGCTTATCAGTGATTTCATTGATATTAA</canonical>
            <polymorphic>TCTTCAAAAAAAAAACTCACTGGCTGGAAAAACATATTTCTGATTTGGTATCAGTTCGGTCCCGAAGATTTCGACATATCCATTTAAAAGTTCCAAGGAAATGTCTGAACAATTGTTGGCGACAAATCTCAATTCACAGCCTGAGTTGAGATCGAACCTTTGAACCCGTTCGGTAAACATTTTGAGATCTGAAGATTTGAATGTTAAAACAAGCGGGAAATTTGAAAAAAAGACGCATGGGGAAAAAAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAAAAAATCAATCACTCTAGAGGTCAGTTGTGACATTAAATGGAGGAAAAATGCGCTCGTTTTTTGAAGCAAAGGAGGACTGGTGGATGAACGCGTCGCGTTTACCAAAATTAATCAATAATGAGCAATACTTGGCTTCTAGGAAAGAAGAATGGGTGTGACGTCATTGATTACATATTCGATRGTTTATTTACAAAAATTATGTACAAGACAAATAAACAAGACAATTAATATCGTTAAGGCAAAATTAGACAGCTGGAGCTCCATCAATGGAATGGAAACTTCTGGAACCTGCCCGTTTTGGAGAGACTTGACCACTTGTGACGCGATGAAGAAGATAGTGTCGACTTCCTGAAAAAAGCTCACATTACAGAAAGCATTAACAGCAAATCTTACAATTGGAGACTTCTGTCTCAATTTGTCAATAGCATCCTTCTGTTGAGCAATGGATTGGTCTTTATTCTGGAGAATATCAGTCAAGTCCTCGAAAACTTTTCCAAGACTGGTAAGAACATTGGCGATTCCATCGAGAAGTTCATGAACAAGATCGGCAACGGTGGCAAGAAGATCGGAAAGAAGGTTCTGAAAATAATAGAAATGCAAAATATCAATTGAGTCTACTAACATCATCAATCTTTCCAGACAACAAATCAGTCAGCTTATCAGTGATTTCATTGATATTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCACTCTAGAGGTCAGTTGTG</pcr_primer_p1>
		<pcr_primer_p2>AGCTGTCTAATTTTGCCTTAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATCACTCTAGAGGTCAGTTGTGACATTAAATGGAGGAAAAATGCGCTCGTTTTTTGAAGCAAAGGAGGACTGGTGGATGAACGCGTCGCGTTTACCAAAATTAATCAATAATGAGCAATACTTGGCTTCTAGGAAAGAAGAATGGGTGTGACGTCATTGATTACATATTCGATAGTTTATTTACAAAAATTATGTACAAGACAAATAAACAAGACAATTAATATCGTTAAGGCAAAATTAGACAGCT</canonical_amplicon>
		<polymorphic_amplicon>AATCACTCTAGAGGTCAGTTGTGACATTAAATGGAGGAAAAATGCGCTCGTTTTTTGAAGCAAAGGAGGACTGGTGGATGAACGCGTCGCGTTTACCAAAATTAATCAATAATGAGCAATACTTGGCTTCTAGGAAAGAAGAATGGGTGTGACGTCATTGATTACATATTCGATRGTTTATTTACAAAAATTATGTACAAGACAAATAAACAAGACAATTAATATCGTTAAGGCAAAATTAGACAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25535</snp_id>
        <super_contig>c001401072.Contig1</super_contig>
        <contig_pos>33393</contig_pos>
        <strand>+</strand>
        <context>GTTTATTTAC[A/G]AAAATTATGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGAAGAATGGGTGTGACGTCATTGATTACATATTCGATAGTTTATTTAC</left_flank>
        <right_flank>AAAATTATGTACAAGACAAATAAACAAGACAATTAATATCGTTAAGGCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACTCACTGGCTGGAAAAACATATTTCTGATTTGGTATCAGTTCGGTCCCGAAGATTTCGACATATCCATTTAAAAGTTCCAAGGAAATGTCTGAACAATTGTTGGCGACAAATCTCAATTCACAGCCTGAGTTGAGATCGAACCTTTGAACCCGTTCGGTAAACATTTTGAGATCTGAAGATTTGAATGTTAAAACAAGCGGGAAATTTGAAAAAAAGACGCATGGGGAAAAAAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAAAAAATCAATCACTCTAGAGGTCAGTTGTGACATTAAATGGAGGAAAAATGCGCTCGTTTTTTGAAGCAAAGGAGGACTGGTGGATGAACGCGTCGCGTTTACCAAAATTAATCAATAATGAGCAATACTTGGCTTCTAGGAAAGAAGAATGGGTGTGACGTCATTGATTACATATTCGATAGTTTATTTACAAAAATTATGTACAAGACAAATAAACAAGACAATTAATATCGTTAAGGCAAAATTAGACAGCTGGAGCTCCATCAATGGAATGGAAACTTCTGGAACCTGCCCGTTTTGGAGAGACTTGACCACTTGTGACGCGATGAAGAAGATAGTGTCGACTTCCTGAAAAAAGCTCACATTACAGAAAGCATTAACAGCAAATCTTACAATTGGAGACTTCTGTCTCAATTTGTCAATAGCATCCTTCTGTTGAGCAATGGATTGGTCTTTATTCTGGAGAATATCAGTCAAGTCCTCGAAAACTTTTCCAAGACTGGTAAGAACATTGGCGATTCCATCGAGAAGTTCATGAACAAGATCGGCAACGGTGGCAAGAAGATCGGAAAGAAGGTTCTGAAAATAATAGAAATGCAAAATATCAATTGAGTCTACTAACATCATCAATCTTTCCAGACAACAAATCAGTCAGCTTATCAGTGATTTCATTGATATTAAGGCTTGTGTTG</canonical>
            <polymorphic>AAAACTCACTGGCTGGAAAAACATATTTCTGATTTGGTATCAGTTCGGTCCCGAAGATTTCGACATATCCATTTAAAAGTTCCAAGGAAATGTCTGAACAATTGTTGGCGACAAATCTCAATTCACAGCCTGAGTTGAGATCGAACCTTTGAACCCGTTCGGTAAACATTTTGAGATCTGAAGATTTGAATGTTAAAACAAGCGGGAAATTTGAAAAAAAGACGCATGGGGAAAAAAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAAAAAATCAATCACTCTAGAGGTCAGTTGTGACATTAAATGGAGGAAAAATGCGCTCGTTTTTTGAAGCAAAGGAGGACTGGTGGATGAACGCGTCGCGTTTACCAAAATTAATCAATAATGAGCAATACTTGGCTTCTAGGAAAGAAGAATGGGTGTGACGTCATTGATTACATATTCGATAGTTTATTTACRAAAATTATGTACAAGACAAATAAACAAGACAATTAATATCGTTAAGGCAAAATTAGACAGCTGGAGCTCCATCAATGGAATGGAAACTTCTGGAACCTGCCCGTTTTGGAGAGACTTGACCACTTGTGACGCGATGAAGAAGATAGTGTCGACTTCCTGAAAAAAGCTCACATTACAGAAAGCATTAACAGCAAATCTTACAATTGGAGACTTCTGTCTCAATTTGTCAATAGCATCCTTCTGTTGAGCAATGGATTGGTCTTTATTCTGGAGAATATCAGTCAAGTCCTCGAAAACTTTTCCAAGACTGGTAAGAACATTGGCGATTCCATCGAGAAGTTCATGAACAAGATCGGCAACGGTGGCAAGAAGATCGGAAAGAAGGTTCTGAAAATAATAGAAATGCAAAATATCAATTGAGTCTACTAACATCATCAATCTTTCCAGACAACAAATCAGTCAGCTTATCAGTGATTTCATTGATATTAAGGCTTGTGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCACTCTAGAGGTCAGTTGTG</pcr_primer_p1>
		<pcr_primer_p2>AGCTGTCTAATTTTGCCTTAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATCACTCTAGAGGTCAGTTGTGACATTAAATGGAGGAAAAATGCGCTCGTTTTTTGAAGCAAAGGAGGACTGGTGGATGAACGCGTCGCGTTTACCAAAATTAATCAATAATGAGCAATACTTGGCTTCTAGGAAAGAAGAATGGGTGTGACGTCATTGATTACATATTCGATAGTTTATTTACAAAAATTATGTACAAGACAAATAAACAAGACAATTAATATCGTTAAGGCAAAATTAGACAGCT</canonical_amplicon>
		<polymorphic_amplicon>AATCACTCTAGAGGTCAGTTGTGACATTAAATGGAGGAAAAATGCGCTCGTTTTTTGAAGCAAAGGAGGACTGGTGGATGAACGCGTCGCGTTTACCAAAATTAATCAATAATGAGCAATACTTGGCTTCTAGGAAAGAAGAATGGGTGTGACGTCATTGATTACATATTCGATAGTTTATTTACRAAAATTATGTACAAGACAAATAAACAAGACAATTAATATCGTTAAGGCAAAATTAGACAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25536</snp_id>
        <super_contig>c001401072.Contig1</super_contig>
        <contig_pos>33421</contig_pos>
        <strand>+</strand>
        <context>AAATAAACAA[A/G]ACAATTAATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATATTCGATAGTTTATTTACAAAAATTATGTACAAGACAAATAAACAA</left_flank>
        <right_flank>ACAATTAATATCGTTAAGGCAAAATTAGACAGCTGGAGCTCCATCAATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGATTTGGTATCAGTTCGGTCCCGAAGATTTCGACATATCCATTTAAAAGTTCCAAGGAAATGTCTGAACAATTGTTGGCGACAAATCTCAATTCACAGCCTGAGTTGAGATCGAACCTTTGAACCCGTTCGGTAAACATTTTGAGATCTGAAGATTTGAATGTTAAAACAAGCGGGAAATTTGAAAAAAAGACGCATGGGGAAAAAAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAAAAAATCAATCACTCTAGAGGTCAGTTGTGACATTAAATGGAGGAAAAATGCGCTCGTTTTTTGAAGCAAAGGAGGACTGGTGGATGAACGCGTCGCGTTTACCAAAATTAATCAATAATGAGCAATACTTGGCTTCTAGGAAAGAAGAATGGGTGTGACGTCATTGATTACATATTCGATAGTTTATTTACAAAAATTATGTACAAGACAAATAAACAAGACAATTAATATCGTTAAGGCAAAATTAGACAGCTGGAGCTCCATCAATGGAATGGAAACTTCTGGAACCTGCCCGTTTTGGAGAGACTTGACCACTTGTGACGCGATGAAGAAGATAGTGTCGACTTCCTGAAAAAAGCTCACATTACAGAAAGCATTAACAGCAAATCTTACAATTGGAGACTTCTGTCTCAATTTGTCAATAGCATCCTTCTGTTGAGCAATGGATTGGTCTTTATTCTGGAGAATATCAGTCAAGTCCTCGAAAACTTTTCCAAGACTGGTAAGAACATTGGCGATTCCATCGAGAAGTTCATGAACAAGATCGGCAACGGTGGCAAGAAGATCGGAAAGAAGGTTCTGAAAATAATAGAAATGCAAAATATCAATTGAGTCTACTAACATCATCAATCTTTCCAGACAACAAATCAGTCAGCTTATCAGTGATTTCATTGATATTAAGGCTTGTGTTGGAGAGAAGTTCAATAACTTGAGGAAGAA</canonical>
            <polymorphic>CTGATTTGGTATCAGTTCGGTCCCGAAGATTTCGACATATCCATTTAAAAGTTCCAAGGAAATGTCTGAACAATTGTTGGCGACAAATCTCAATTCACAGCCTGAGTTGAGATCGAACCTTTGAACCCGTTCGGTAAACATTTTGAGATCTGAAGATTTGAATGTTAAAACAAGCGGGAAATTTGAAAAAAAGACGCATGGGGAAAAAAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAGAGAAAAAAAAAATCAATCACTCTAGAGGTCAGTTGTGACATTAAATGGAGGAAAAATGCGCTCGTTTTTTGAAGCAAAGGAGGACTGGTGGATGAACGCGTCGCGTTTACCAAAATTAATCAATAATGAGCAATACTTGGCTTCTAGGAAAGAAGAATGGGTGTGACGTCATTGATTACATATTCGATAGTTTATTTACAAAAATTATGTACAAGACAAATAAACAARACAATTAATATCGTTAAGGCAAAATTAGACAGCTGGAGCTCCATCAATGGAATGGAAACTTCTGGAACCTGCCCGTTTTGGAGAGACTTGACCACTTGTGACGCGATGAAGAAGATAGTGTCGACTTCCTGAAAAAAGCTCACATTACAGAAAGCATTAACAGCAAATCTTACAATTGGAGACTTCTGTCTCAATTTGTCAATAGCATCCTTCTGTTGAGCAATGGATTGGTCTTTATTCTGGAGAATATCAGTCAAGTCCTCGAAAACTTTTCCAAGACTGGTAAGAACATTGGCGATTCCATCGAGAAGTTCATGAACAAGATCGGCAACGGTGGCAAGAAGATCGGAAAGAAGGTTCTGAAAATAATAGAAATGCAAAATATCAATTGAGTCTACTAACATCATCAATCTTTCCAGACAACAAATCAGTCAGCTTATCAGTGATTTCATTGATATTAAGGCTTGTGTTGGAGAGAAGTTCAATAACTTGAGGAAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGGAAAGAAGAATGGGTGT</pcr_primer_p1>
		<pcr_primer_p2>GCTGTTAATGCTTTCTGTAATGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTAGGAAAGAAGAATGGGTGTGACGTCATTGATTACATATTCGATAGTTTATTTACAAAAATTATGTACAAGACAAATAAACAAGACAATTAATATCGTTAAGGCAAAATTAGACAGCTGGAGCTCCATCAATGGAATGGAAACTTCTGGAACCTGCCCGTTTTGGAGAGACTTGACCACTTGTGACGCGATGAAGAAGATAGTGTCGACTTCCTGAAAAAAGCTCACATTACAGAAAGCATTAACAGC</canonical_amplicon>
		<polymorphic_amplicon>CTAGGAAAGAAGAATGGGTGTGACGTCATTGATTACATATTCGATAGTTTATTTACAAAAATTATGTACAAGACAAATAAACAARACAATTAATATCGTTAAGGCAAAATTAGACAGCTGGAGCTCCATCAATGGAATGGAAACTTCTGGAACCTGCCCGTTTTGGAGAGACTTGACCACTTGTGACGCGATGAAGAAGATAGTGTCGACTTCCTGAAAAAAGCTCACATTACAGAAAGCATTAACAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25537</snp_id>
        <super_contig>c001401072.Contig1</super_contig>
        <contig_pos>35134</contig_pos>
        <strand>-</strand>
        <context>TCCTCCAAAA[C/T]GTWCCATCGG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTGGAGACATCACCACACTCCCACAGTTCTTGCTTGACTTCCTCCAAAA</left_flank>
        <right_flank>GTTCCATCGGATATTCTTCCTCAAGTTATTGAACTTCTCTCCAACACAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTCAGACAAAAACCAATTTTTACATAATTTCAAAACATTCTGTTGCTCAAAAACTAATCTCACAGTTGACAACATTTTTTTTAACCGTATTATTCAAATCTTTCTCTAGCATTTGGGTATATAAAACGAGCATTTTGCAGTGGTAAAAGTATATCATTCTTTCTATCACATTTTATCAATCAGTTCAATTTTTGAAAATTTTCAGAATGTACTCCTTCAAAGCCGTCTTCGCTGTCGTCGCTTCTATTGCTCTGGTTTCTGGTGCTCATGGTGGATTGCTGGGATTAGGAGGAGACGAAGGAGGACTCGGTGGACTTGTCGGAGGACTTCTTGGAGAAAATGGACTCGGTGGAATCTTGAAGGGACTTCTCGGAGACAATGAAAACGCTCTCAGTGGACTTCTGGGTATTCTCGGGGGAAATCCAGGTGGCTTGGGATTGCCAATTCTTGGAGACATCACCACACTCCCACAGTTCTTGCTTGACTTCCTCCAAAAGGTTCCATCGGATATTCTTCCTCAAGTTATTGAACTTCTCTCCAACACAAGCCTTAATATCAATGAAATCACTGACAAGCTGACTGATTTGTTGTCTGGAAAGATTGATGATGTTAGTAGACTCAATTGATATTTTGCATTTCTATTATTTTCAGAACCTTCTTTCCGATCTTCTTGCCACCGTTGCCGATCTTGTTCATGAACTTCTCGATGGAATCGCCAATGTTCTTACCAGTCTTGGAAAAGTTTTCGAGGACTTGACTGATATTCTCCAGAATAAAGACCAATCCATTGCTCAACAGAAGGATGCTATTGACAAATTGAGACAGAAGTCTCCAATTGTAAGATTTGCTGTTAATGCTTTCTGTAATGTGAGCTTTTTTCAGGAAGTCGACACTATCTTCTTCATCGCGTCACAAGTGGTCAAGTCTCTCCAAAACGGGCAGGTTCCAGAAGTTTCCATTCCAGTTGATGGAGCTCCAGCTGTCTAATTTTGTCTTA</canonical>
            <polymorphic>ATTTTCAGACAAAAACCAATTTTTACATAATTTCAAAACATTCTGTTGCTCAAAAACTAATCTCACAGTTGACAACATTTTTTTTAACCGTATTATTCAAATCTTTCTCTAGCATTTGGGTATATAAAACGAGCATTTTGCAGTGGTAAAAGTATATCATTCTTTCTATCACATTTTATCAATCAGTTCAATTTTTGAAAATTTTCAGAATGTACTCCTTCAAAGCCGTCTTCGCTGTCGTCGCTTCTATTGCTCTGGTTTCTGGTGCTCATGGTGGATTGCTGGGATTAGGAGGAGACGAAGGAGGACTCGGTGGACTTGTCGGAGGACTTCTTGGAGAAAATGGACTCGGTGGAATCTTGAAGGGACTTCTCGGAGACAATGAAAACGCTCTCAGTGGACTTCTGGGTATTCTCGGGGGAAATCCAGGTGGCTTGGGATTGCCAATTCTTGGAGACATCACCACACTCCCACAGTTCTTGCTTGACTTCCTCCAAAAYGTTCCATCGGATATTCTTCCTCAAGTTATTGAACTTCTCTCCAACACAAGCCTTAATATCAATGAAATCACTGACAAGCTGACTGATTTGTTGTCTGGAAAGATTGATGATGTTAGTAGACTCAATTGATATTTTGCATTTCTATTATTTTCAGAACCTTCTTTCCGATCTTCTTGCCACCGTTGCCGATCTTGTTCATGAACTTCTCGATGGAATCGCCAATGTTCTTACCAGTCTTGGAAAAGTTTTCGAGGACTTGACTGATATTCTCCAGAATAAAGACCAATCCATTGCTCAACAGAAGGATGCTATTGACAAATTGAGACAGAAGTCTCCAATTGTAAGATTTGCTGTTAATGCTTTCTGTAATGTGAGCTTTTTTCAGGAAGTCGACACTATCTTCTTCATCGCGTCACAAGTGGTCAAGTCTCTCCAAAACGGGCAGGTTCCAGAAGTTTCCATTCCAGTTGATGGAGCTCCAGCTGTCTAATTTTGTCTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>473 450 47 30</canonical_bands>
                <polymorphic_bands>520 450 30</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 445 53</canonical_bands>
                <polymorphic_bands>947 53</polymorphic_bands>
            </assay>
            <assay>
                <site>CCTNNNNNAGG</site>
                <isoschizomers>
                    <enzyme>BstENI</enzyme>
                    <enzyme>EcoNI</enzyme>
                    <enzyme>XagI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTTGTCGGAGGACTTCTT</pcr_primer_p1>
		<pcr_primer_p2>TCATTGATATTAAGGCTTGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACTTGTCGGAGGACTTCTTGGAGAAAATGGACTCGGTGGAATCTTGAAGGGACTTCTCGGAGACAATGAAAACGCTCTCAGTGGACTTCTGGGTATTCTCGGGGGAAATCCAGGTGGCTTGGGATTGCCAATTCTTGGAGACATCACCACACTCCCACAGTTCTTGCTTGACTTCCTCCAAAAGGTTCCATCGGATATTCTTCCTCAAGTTATTGAACTTCTCTCCAACACAAGCCTTAATATCAATGA</canonical_amplicon>
		<polymorphic_amplicon>GACTTGTCGGAGGACTTCTTGGAGAAAATGGACTCGGTGGAATCTTGAAGGGACTTCTCGGAGACAATGAAAACGCTCTCAGTGGACTTCTGGGTATTCTCGGGGGAAATCCAGGTGGCTTGGGATTGCCAATTCTTGGAGACATCACCACACTCCCACAGTTCTTGCTTGACTTCCTCCAAAAYGTTCCATCGGATATTCTTCCTCAAGTTATTGAACTTCTCTCCAACACAAGCCTTAATATCAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25538</snp_id>
        <super_contig>c001401072.Contig1</super_contig>
        <contig_pos>35137</contig_pos>
        <strand>-</strand>
        <context>TCCAAAAYGT[A/T]CCATCGGATA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAGACATCACCACACTCCCACAGTTCTTGCTTGACTTCCTCCAAAAGGT</left_flank>
        <right_flank>CCATCGGATATTCTTCCTCAAGTTATTGAACTTCTCTCCAACACAAGCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAGACAAAAACCAATTTTTACATAATTTCAAAACATTCTGTTGCTCAAAAACTAATCTCACAGTTGACAACATTTTTTTTAACCGTATTATTCAAATCTTTCTCTAGCATTTGGGTATATAAAACGAGCATTTTGCAGTGGTAAAAGTATATCATTCTTTCTATCACATTTTATCAATCAGTTCAATTTTTGAAAATTTTCAGAATGTACTCCTTCAAAGCCGTCTTCGCTGTCGTCGCTTCTATTGCTCTGGTTTCTGGTGCTCATGGTGGATTGCTGGGATTAGGAGGAGACGAAGGAGGACTCGGTGGACTTGTCGGAGGACTTCTTGGAGAAAATGGACTCGGTGGAATCTTGAAGGGACTTCTCGGAGACAATGAAAACGCTCTCAGTGGACTTCTGGGTATTCTCGGGGGAAATCCAGGTGGCTTGGGATTGCCAATTCTTGGAGACATCACCACACTCCCACAGTTCTTGCTTGACTTCCTCCAAAAGGTTCCATCGGATATTCTTCCTCAAGTTATTGAACTTCTCTCCAACACAAGCCTTAATATCAATGAAATCACTGACAAGCTGACTGATTTGTTGTCTGGAAAGATTGATGATGTTAGTAGACTCAATTGATATTTTGCATTTCTATTATTTTCAGAACCTTCTTTCCGATCTTCTTGCCACCGTTGCCGATCTTGTTCATGAACTTCTCGATGGAATCGCCAATGTTCTTACCAGTCTTGGAAAAGTTTTCGAGGACTTGACTGATATTCTCCAGAATAAAGACCAATCCATTGCTCAACAGAAGGATGCTATTGACAAATTGAGACAGAAGTCTCCAATTGTAAGATTTGCTGTTAATGCTTTCTGTAATGTGAGCTTTTTTCAGGAAGTCGACACTATCTTCTTCATCGCGTCACAAGTGGTCAAGTCTCTCCAAAACGGGCAGGTTCCAGAAGTTTCCATTCCAGTTGATGGAGCTCCAGCTGTCTAATTTTGTCTTAACG</canonical>
            <polymorphic>TTCAGACAAAAACCAATTTTTACATAATTTCAAAACATTCTGTTGCTCAAAAACTAATCTCACAGTTGACAACATTTTTTTTAACCGTATTATTCAAATCTTTCTCTAGCATTTGGGTATATAAAACGAGCATTTTGCAGTGGTAAAAGTATATCATTCTTTCTATCACATTTTATCAATCAGTTCAATTTTTGAAAATTTTCAGAATGTACTCCTTCAAAGCCGTCTTCGCTGTCGTCGCTTCTATTGCTCTGGTTTCTGGTGCTCATGGTGGATTGCTGGGATTAGGAGGAGACGAAGGAGGACTCGGTGGACTTGTCGGAGGACTTCTTGGAGAAAATGGACTCGGTGGAATCTTGAAGGGACTTCTCGGAGACAATGAAAACGCTCTCAGTGGACTTCTGGGTATTCTCGGGGGAAATCCAGGTGGCTTGGGATTGCCAATTCTTGGAGACATCACCACACTCCCACAGTTCTTGCTTGACTTCCTCCAAAAGGTWCCATCGGATATTCTTCCTCAAGTTATTGAACTTCTCTCCAACACAAGCCTTAATATCAATGAAATCACTGACAAGCTGACTGATTTGTTGTCTGGAAAGATTGATGATGTTAGTAGACTCAATTGATATTTTGCATTTCTATTATTTTCAGAACCTTCTTTCCGATCTTCTTGCCACCGTTGCCGATCTTGTTCATGAACTTCTCGATGGAATCGCCAATGTTCTTACCAGTCTTGGAAAAGTTTTCGAGGACTTGACTGATATTCTCCAGAATAAAGACCAATCCATTGCTCAACAGAAGGATGCTATTGACAAATTGAGACAGAAGTCTCCAATTGTAAGATTTGCTGTTAATGCTTTCTGTAATGTGAGCTTTTTTCAGGAAGTCGACACTATCTTCTTCATCGCGTCACAAGTGGTCAAGTCTCTCCAAAACGGGCAGGTTCCAGAAGTTTCCATTCCAGTTGATGGAGCTCCAGCTGTCTAATTTTGTCTTAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTTGTCGGAGGACTTCTT</pcr_primer_p1>
		<pcr_primer_p2>TCATTGATATTAAGGCTTGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACTTGTCGGAGGACTTCTTGGAGAAAATGGACTCGGTGGAATCTTGAAGGGACTTCTCGGAGACAATGAAAACGCTCTCAGTGGACTTCTGGGTATTCTCGGGGGAAATCCAGGTGGCTTGGGATTGCCAATTCTTGGAGACATCACCACACTCCCACAGTTCTTGCTTGACTTCCTCCAAAAGGTTCCATCGGATATTCTTCCTCAAGTTATTGAACTTCTCTCCAACACAAGCCTTAATATCAATGA</canonical_amplicon>
		<polymorphic_amplicon>GACTTGTCGGAGGACTTCTTGGAGAAAATGGACTCGGTGGAATCTTGAAGGGACTTCTCGGAGACAATGAAAACGCTCTCAGTGGACTTCTGGGTATTCTCGGGGGAAATCCAGGTGGCTTGGGATTGCCAATTCTTGGAGACATCACCACACTCCCACAGTTCTTGCTTGACTTCCTCCAAAAGGTWCCATCGGATATTCTTCCTCAAGTTATTGAACTTCTCTCCAACACAAGCCTTAATATCAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25539</snp_id>
        <super_contig>c001401072.Contig1</super_contig>
        <contig_pos>98087</contig_pos>
        <strand></strand>
        <context>GAATTaccgt[T/A]aaacatgtaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGGTTTGAGGTGTTACCTTTAATAGACCGGCACTGGATGAGAATTACCGT</left_flank>
        <right_flank>AAACATGTAATAGAAGGGCCTCTAACTTTGAGCCAATTTATCTCGGTTCG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGTTCATAAAAAGATGTGTTGTTTCATCCATAACCAAGGCTATGCAAATCTCGGCCGCGGCCGGCCGTGGGCATGACCACCACTACAGTATACAAAAGTCTCACTTCCTTTTTTTCCCTTTATTTTTCCCCCCAAGAAGTTGTATAACTTGAGCCAATTTTTCTCGAAACTGTGTCATCTAAATGGCTCCGTTTTTCTGTATATTGCCTACTGTTCGACTAGGCAGATTTTTTTTCAGACGCTCGACACGGACTACACACGGAATACATTTTGTACAAGTTAGTTTTGTCTGAAAATTCCAGCATGGAATGCCCCAGAAACTAGTTTGGTTTAGAACGAAATGTATACATCAACACCTTTTGATATAAACGACCCAGCAACATAAACAAAGTGGAATCGTCAAAACTTTTTTTAGAATCAGCGTTTTGTTTATTTTGTAGCTTGCTTTGGTTTGAGGTGTTACCTTTAATAGACCGGCACTGGATGAGAATTACCGTTAAACATGTAATAGAAGGGCCTCTAACTTTGAGCCAATTTATCTCGGTTCGAGTGAAAGATATCAAGAATGGGTTAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAATTGCCACATTTTTGATATCTTGCATAGGAATTGAGATAATTGAGCTAAAACTTGACAGTGTAGGTTTCCTTCTATTACAGGTTATATGGCATTTCGATTTCTGAAAAAACGATATCAAGACTTTTCAAAAATTCTCAGAATGTTATCAGTAGATAATTTGTTGATATCACCTCCAGAAAATGAGATAAACCTGTCTGATTGCATGTGTCTTTTGTGAGGCGTACTGATTTCAAAAGATCCCAATTTTTGATTTTGCTCACTTTTCCCTGCCCTCACTTCCTCTCTCCAGCTTTAATAACTTCCTATCTATATTTTTCCACAGGGATCGAACTAATGCGAAGTAGCGTGTCAGCTTCAAATTTATTTTCATGCGGCGTGATAAT</canonical>
            <polymorphic>GATGTTCATAAAAAGATGTGTTGTTTCATCCATAACCAAGGCTATGCAAATCTCGGCCGCGGCCGGCCGTGGGCATGACCACCACTACAGTATACAAAAGTCTCACTTCCTTTTTTTCCCTTTATTTTTCCCCCCAAGAAGTTGTATAACTTGAGCCAATTTTTCTCGAAACTGTGTCATCTAAATGGCTCCGTTTTTCTGTATATTGCCTACTGTTCGACTAGGCAGATTTTTTTTCAGACGCTCGACACGGACTACACACGGAATACATTTTGTACAAGTTAGTTTTGTCTGAAAATTCCAGCATGGAATGCCCCAGAAACTAGTTTGGTTTAGAACGAAATGTATACATCAACACCTTTTGATATAAACGACCCAGCAACATAAACAAAGTGGAATCGTCAAAACTTTTTTTAGAATCAGCGTTTTGTTTATTTTGTAGCTTGCTTTGGTTTGAGGTGTTACCTTTAATAGACCGGCACTGGATGAGAATTACCGTWAAACATGTAATAGAAGGGCCTCTAACTTTGAGCCAATTTATCTCGGTTCGAGTGAAAGATATCAAGAATGGGTTAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAATTGCCACATTTTTGATATCTTGCATAGGAATTGAGATAATTGAGCTAAAACTTGACAGTGTAGGTTTCCTTCTATTACAGGTTATATGGCATTTCGATTTCTGAAAAAACGATATCAAGACTTTTCAAAAATTCTCAGAATGTTATCAGTAGATAATTTGTTGATATCACCTCCAGAAAATGAGATAAACCTGTCTGATTGCATGTGTCTTTTGTGAGGCGTACTGATTTCAAAAGATCCCAATTTTTGATTTTGCTCACTTTTCCCTGCCCTCACTTCCTCTCTCCAGCTTTAATAACTTCCTATCTATATTTTTCCACAGGGATCGAACTAATGCGAAGTAGCGTGTCAGCTTCAAATTTATTTTCATGCGGCGTGATAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>468 336 91 74 31</canonical_bands>
                <polymorphic_bands>468 336 105 91</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCGTTTTGTTTATTTTGTAGC</pcr_primer_p1>
		<pcr_primer_p2>TATTAAAGCTGGAGAGAGGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>493</pcr_amplicon_size>
		<canonical_amplicon>AGCGTTTTGTTTATTTTGTAGCTTGCTTTGGTTTGAGGTGTTACCTTTAATAGACCGGCACTGGATGAGAATTACCGTTAAACATGTAATAGAAGGGCCTCTAACTTTGAGCCAATTTATCTCGGTTCGAGTGAAAGATATCAAGAATGGGTTAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAATTGCCACATTTTTGATATCTTGCATAGGAATTGAGATAATTGAGCTAAAACTTGACAGTGTAGGTTTCCTTCTATTACAGGTTATATGGCATTTCGATTTCTGAAAAAACGATATCAAGACTTTTCAAAAATTCTCAGAATGTTATCAGTAGATAATTTGTTGATATCACCTCCAGAAAATGAGATAAACCTGTCTGATTGCATGTGTCTTTTGTGAGGCGTACTGATTTCAAAAGATCCCAATTTTTGATTTTGCTCACTTTTCCCTGCCCTCACTTCCTCTCTCCAGCTTTAATA</canonical_amplicon>
		<polymorphic_amplicon>AGCGTTTTGTTTATTTTGTAGCTTGCTTTGGTTTGAGGTGTTACCTTTAATAGACCGGCACTGGATGAGAATTACCGTWAAACATGTAATAGAAGGGCCTCTAACTTTGAGCCAATTTATCTCGGTTCGAGTGAAAGATATCAAGAATGGGTTAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAATTGCCACATTTTTGATATCTTGCATAGGAATTGAGATAATTGAGCTAAAACTTGACAGTGTAGGTTTCCTTCTATTACAGGTTATATGGCATTTCGATTTCTGAAAAAACGATATCAAGACTTTTCAAAAATTCTCAGAATGTTATCAGTAGATAATTTGTTGATATCACCTCCAGAAAATGAGATAAACCTGTCTGATTGCATGTGTCTTTTGTGAGGCGTACTGATTTCAAAAGATCCCAATTTTTGATTTTGCTCACTTTTCCCTGCCCTCACTTCCTCTCTCCAGCTTTAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25540</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>4209</contig_pos>
        <strand></strand>
        <context>ctcgactttt[C/T]tgagcttcat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGATAAAGGGCATGGAATTTTTTTTTCAAAAAAAAAGGACTCGACTTTT</left_flank>
        <right_flank>TGAGCTTCATATCTCAAAAACTAAGAATTTCAGAGCAAAATTTTAAATTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGATGTCGTTTTTCCAATTCTCACGTATTTTTCTCACATTTTTTTGCTGTTTCTTATTCTAGAAAAAGTAAAACTTGTGCCTAATTATCCAAGCGCTTCTCCTCTTTTTTTTTCGTCCTTTTTTCTCTTTTCAGAATACGTGGAAAAAAGAAAAGTGGGCGGAGCCAATTTCAGTTAATTGGCTAATTAGAGGATGGGAAAGAAATCAGAGAAGCTTCTCTTCTTTTTTATCCAAAGACATCAAATATTCATTCAGGGAAAAAAAAAAGAGAAAAAGTGTTTACGTCTCCTCTCCACCCCCACACATTACGTATTCTGAGCCTCTTTTTCGGTATTTTTGAGTAATTATAAAACTAATCAGCATGAAAATTTAAATAATTAAAAAAGAGCAAAAAATTTGAAACATATTTCTAGTTGGAATTTTTTCAATACCTTTTCTGGATTATGAGATAAAGGGCATGGAATTTTTTTTTCAAAAAAAAAGGACTCGACTTTTCTGAGCTTCATATCTCAAAAACTAAGAATTTCAGAGCAAAATTTTAAATTACAAAATTGTAGATTTTGAAATTTCTCACATTTTATTTTTTAAATAAGGTCTTTAGCTTTTCCAGTTTTTGAGATATGAATTTTTAAAAATTAAAAAAATTTTGAGCTTAAAATTTTTTTTCGAATTTTCGAACAGTTATATCTCAAAAACTAAAAAAGCTAGAAATTTTTTCTTAACTAGAAACATGTTTTTTAAAATGCTTTAGATTTTATAGCTAATTTTTTAGATTTTATAGCTATCAAGCTAGATATAATCCCGTATAATCAAATCGGAAGGCTGTTTGTCATTCCATTCCACTCCAGATGATTTTATCATCGAATTTGAACTTTTTTCTTCCTCTTTTTTTTTCAAGTTTAGAGTTCTAGACGGAAAGCGGGAAATTCAAATTTCCATGGGGAATGTGTCGATTTACGTCATTCGATGAGGAAAATAGGCTCCGCCCACTTTTTG</canonical>
            <polymorphic>TTCTGATGTCGTTTTTCCAATTCTCACGTATTTTTCTCACATTTTTTTGCTGTTTCTTATTCTAGAAAAAGTAAAACTTGTGCCTAATTATCCAAGCGCTTCTCCTCTTTTTTTTTCGTCCTTTTTTCTCTTTTCAGAATACGTGGAAAAAAGAAAAGTGGGCGGAGCCAATTTCAGTTAATTGGCTAATTAGAGGATGGGAAAGAAATCAGAGAAGCTTCTCTTCTTTTTTATCCAAAGACATCAAATATTCATTCAGGGAAAAAAAAAAGAGAAAAAGTGTTTACGTCTCCTCTCCACCCCCACACATTACGTATTCTGAGCCTCTTTTTCGGTATTTTTGAGTAATTATAAAACTAATCAGCATGAAAATTTAAATAATTAAAAAAGAGCAAAAAATTTGAAACATATTTCTAGTTGGAATTTTTTCAATACCTTTTCTGGATTATGAGATAAAGGGCATGGAATTTTTTTTTCAAAAAAAAAGGACTCGACTTTTYTGAGCTTCATATCTCAAAAACTAAGAATTTCAGAGCAAAATTTTAAATTACAAAATTGTAGATTTTGAAATTTCTCACATTTTATTTTTTAAATAAGGTCTTTAGCTTTTCCAGTTTTTGAGATATGAATTTTTAAAAATTAAAAAAATTTTGAGCTTAAAATTTTTTTTCGAATTTTCGAACAGTTATATCTCAAAAACTAAAAAAGCTAGAAATTTTTTCTTAACTAGAAACATGTTTTTTAAAATGCTTTAGATTTTATAGCTAATTTTTTAGATTTTATAGCTATCAAGCTAGATATAATCCCGTATAATCAAATCGGAAGGCTGTTTGTCATTCCATTCCACTCCAGATGATTTTATCATCGAATTTGAACTTTTTTCTTCCTCTTTTTTTTTCAAGTTTAGAGTTCTAGACGGAAAGCGGGAAATTCAAATTTCCATGGGGAATGTGTCGATTTACGTCATTCGATGAGGAAAATAGGCTCCGCCCACTTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>479 319 181 21</canonical_bands>
                <polymorphic_bands>479 319 202</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>289 181 179 132 109 75 31 4</canonical_bands>
                <polymorphic_bands>289 212 179 132 109 75 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTTCGGTATTTTTGAGTAA</pcr_primer_p1>
		<pcr_primer_p2>TTGATTATACGGGATTATATCTAGC</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTTCGGTATTTTTGAGTAATTATAAAACTAATCAGCATGAAAATTTAAATAATTAAAAAAGAGCAAAAAATTTGAAACATATTTCTAGTTGGAATTTTTTCAATACCTTTTCTGGATTATGAGATAAAGGGCATGGAATTTTTTTTTCAAAAAAAAAGGACTCGACTTTTCTGAGCTTCATATCTCAAAAACTAAGAATTTCAGAGCAAAATTTTAAATTACAAAATTGTAGATTTTGAAATTTCTCACATTTTATTTTTTAAATAAGGTCTTTAGCTTTTCCAGTTTTTGAGATATGAATTTTTAAAAATTAAAAAAATTTTGAGCTTAAAATTTTTTTTCGAATTTTCGAACAGTTATATCTCAAAAACTAAAAAAGCTAGAAATTTTTTCTTAACTAGAAACATGTTTTTTAAAATGCTTTAGATTTTATAGCTAATTTTTTAGATTTTATAGCTATCAAGCTAGATATAATCCCGTATAATCAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTTCGGTATTTTTGAGTAATTATAAAACTAATCAGCATGAAAATTTAAATAATTAAAAAAGAGCAAAAAATTTGAAACATATTTCTAGTTGGAATTTTTTCAATACCTTTTCTGGATTATGAGATAAAGGGCATGGAATTTTTTTTTCAAAAAAAAAGGACTCGACTTTTYTGAGCTTCATATCTCAAAAACTAAGAATTTCAGAGCAAAATTTTAAATTACAAAATTGTAGATTTTGAAATTTCTCACATTTTATTTTTTAAATAAGGTCTTTAGCTTTTCCAGTTTTTGAGATATGAATTTTTAAAAATTAAAAAAATTTTGAGCTTAAAATTTTTTTTCGAATTTTCGAACAGTTATATCTCAAAAACTAAAAAAGCTAGAAATTTTTTCTTAACTAGAAACATGTTTTTTAAAATGCTTTAGATTTTATAGCTAATTTTTTAGATTTTATAGCTATCAAGCTAGATATAATCCCGTATAATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25541</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>4253</contig_pos>
        <strand></strand>
        <context>agcaaaattt[T/C]aaattacaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACTTTTCTGAGCTTCATATCTCAAAAACTAAGAATTTCAGAGCAAAATTT</left_flank>
        <right_flank>AAATTACAAAATTGTAGATTTTGAAATTTCTCACATTTTATTTTTTAAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGCTGTTTCTTATTCTAGAAAAAGTAAAACTTGTGCCTAATTATCCAAGCGCTTCTCCTCTTTTTTTTTCGTCCTTTTTTCTCTTTTCAGAATACGTGGAAAAAAGAAAAGTGGGCGGAGCCAATTTCAGTTAATTGGCTAATTAGAGGATGGGAAAGAAATCAGAGAAGCTTCTCTTCTTTTTTATCCAAAGACATCAAATATTCATTCAGGGAAAAAAAAAAGAGAAAAAGTGTTTACGTCTCCTCTCCACCCCCACACATTACGTATTCTGAGCCTCTTTTTCGGTATTTTTGAGTAATTATAAAACTAATCAGCATGAAAATTTAAATAATTAAAAAAGAGCAAAAAATTTGAAACATATTTCTAGTTGGAATTTTTTCAATACCTTTTCTGGATTATGAGATAAAGGGCATGGAATTTTTTTTTCAAAAAAAAAGGACTCGACTTTTCTGAGCTTCATATCTCAAAAACTAAGAATTTCAGAGCAAAATTTTAAATTACAAAATTGTAGATTTTGAAATTTCTCACATTTTATTTTTTAAATAAGGTCTTTAGCTTTTCCAGTTTTTGAGATATGAATTTTTAAAAATTAAAAAAATTTTGAGCTTAAAATTTTTTTTCGAATTTTCGAACAGTTATATCTCAAAAACTAAAAAAGCTAGAAATTTTTTCTTAACTAGAAACATGTTTTTTAAAATGCTTTAGATTTTATAGCTAATTTTTTAGATTTTATAGCTATCAAGCTAGATATAATCCCGTATAATCAAATCGGAAGGCTGTTTGTCATTCCATTCCACTCCAGATGATTTTATCATCGAATTTGAACTTTTTTCTTCCTCTTTTTTTTTCAAGTTTAGAGTTCTAGACGGAAAGCGGGAAATTCAAATTTCCATGGGGAATGTGTCGATTTACGTCATTCGATGAGGAAAATAGGCTCCGCCCACTTTTTGTGTTGGAGCATCCTGTCTAGAGTGTTCATATAAATATAGGTTTG</canonical>
            <polymorphic>TTTTGCTGTTTCTTATTCTAGAAAAAGTAAAACTTGTGCCTAATTATCCAAGCGCTTCTCCTCTTTTTTTTTCGTCCTTTTTTCTCTTTTCAGAATACGTGGAAAAAAGAAAAGTGGGCGGAGCCAATTTCAGTTAATTGGCTAATTAGAGGATGGGAAAGAAATCAGAGAAGCTTCTCTTCTTTTTTATCCAAAGACATCAAATATTCATTCAGGGAAAAAAAAAAGAGAAAAAGTGTTTACGTCTCCTCTCCACCCCCACACATTACGTATTCTGAGCCTCTTTTTCGGTATTTTTGAGTAATTATAAAACTAATCAGCATGAAAATTTAAATAATTAAAAAAGAGCAAAAAATTTGAAACATATTTCTAGTTGGAATTTTTTCAATACCTTTTCTGGATTATGAGATAAAGGGCATGGAATTTTTTTTTCAAAAAAAAAGGACTCGACTTTTCTGAGCTTCATATCTCAAAAACTAAGAATTTCAGAGCAAAATTTYAAATTACAAAATTGTAGATTTTGAAATTTCTCACATTTTATTTTTTAAATAAGGTCTTTAGCTTTTCCAGTTTTTGAGATATGAATTTTTAAAAATTAAAAAAATTTTGAGCTTAAAATTTTTTTTCGAATTTTCGAACAGTTATATCTCAAAAACTAAAAAAGCTAGAAATTTTTTCTTAACTAGAAACATGTTTTTTAAAATGCTTTAGATTTTATAGCTAATTTTTTAGATTTTATAGCTATCAAGCTAGATATAATCCCGTATAATCAAATCGGAAGGCTGTTTGTCATTCCATTCCACTCCAGATGATTTTATCATCGAATTTGAACTTTTTTCTTCCTCTTTTTTTTTCAAGTTTAGAGTTCTAGACGGAAAGCGGGAAATTCAAATTTCCATGGGGAATGTGTCGATTTACGTCATTCGATGAGGAAAATAGGCTCCGCCCACTTTTTGTGTTGGAGCATCCTGTCTAGAGTGTTCATATAAATATAGGTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>331 301 169 109 46 44</canonical_bands>
                <polymorphic_bands>331 301 215 109 44</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>302 196 161 134 66 46 44 19 17 8 7</canonical_bands>
                <polymorphic_bands>302 207 196 134 66 44 19 17 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTTCGGTATTTTTGAGTAA</pcr_primer_p1>
		<pcr_primer_p2>TTGATTATACGGGATTATATCTAGC</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTTCGGTATTTTTGAGTAATTATAAAACTAATCAGCATGAAAATTTAAATAATTAAAAAAGAGCAAAAAATTTGAAACATATTTCTAGTTGGAATTTTTTCAATACCTTTTCTGGATTATGAGATAAAGGGCATGGAATTTTTTTTTCAAAAAAAAAGGACTCGACTTTTCTGAGCTTCATATCTCAAAAACTAAGAATTTCAGAGCAAAATTTTAAATTACAAAATTGTAGATTTTGAAATTTCTCACATTTTATTTTTTAAATAAGGTCTTTAGCTTTTCCAGTTTTTGAGATATGAATTTTTAAAAATTAAAAAAATTTTGAGCTTAAAATTTTTTTTCGAATTTTCGAACAGTTATATCTCAAAAACTAAAAAAGCTAGAAATTTTTTCTTAACTAGAAACATGTTTTTTAAAATGCTTTAGATTTTATAGCTAATTTTTTAGATTTTATAGCTATCAAGCTAGATATAATCCCGTATAATCAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTTCGGTATTTTTGAGTAATTATAAAACTAATCAGCATGAAAATTTAAATAATTAAAAAAGAGCAAAAAATTTGAAACATATTTCTAGTTGGAATTTTTTCAATACCTTTTCTGGATTATGAGATAAAGGGCATGGAATTTTTTTTTCAAAAAAAAAGGACTCGACTTTTCTGAGCTTCATATCTCAAAAACTAAGAATTTCAGAGCAAAATTTYAAATTACAAAATTGTAGATTTTGAAATTTCTCACATTTTATTTTTTAAATAAGGTCTTTAGCTTTTCCAGTTTTTGAGATATGAATTTTTAAAAATTAAAAAAATTTTGAGCTTAAAATTTTTTTTCGAATTTTCGAACAGTTATATCTCAAAAACTAAAAAAGCTAGAAATTTTTTCTTAACTAGAAACATGTTTTTTAAAATGCTTTAGATTTTATAGCTAATTTTTTAGATTTTATAGCTATCAAGCTAGATATAATCCCGTATAATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25542</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>4388</contig_pos>
        <strand></strand>
        <context>TTCGAATTTT[C/T]GAACAGTTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTTAAAAATTAAAAAAATTTTGAGCTTAAAATTTTTTTTCGAATTTT</left_flank>
        <right_flank>GAACAGTTATATCTCAAAAACTAAAAAAGCTAGAAATTTTTTCTTAACTA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGGCTAATTAGAGGATGGGAAAGAAATCAGAGAAGCTTCTCTTCTTTTTTATCCAAAGACATCAAATATTCATTCAGGGAAAAAAAAAAGAGAAAAAGTGTTTACGTCTCCTCTCCACCCCCACACATTACGTATTCTGAGCCTCTTTTTCGGTATTTTTGAGTAATTATAAAACTAATCAGCATGAAAATTTAAATAATTAAAAAAGAGCAAAAAATTTGAAACATATTTCTAGTTGGAATTTTTTCAATACCTTTTCTGGATTATGAGATAAAGGGCATGGAATTTTTTTTTCAAAAAAAAAGGACTCGACTTTTCTGAGCTTCATATCTCAAAAACTAAGAATTTCAGAGCAAAATTTTAAATTACAAAATTGTAGATTTTGAAATTTCTCACATTTTATTTTTTAAATAAGGTCTTTAGCTTTTCCAGTTTTTGAGATATGAATTTTTAAAAATTAAAAAAATTTTGAGCTTAAAATTTTTTTTCGAATTTTCGAACAGTTATATCTCAAAAACTAAAAAAGCTAGAAATTTTTTCTTAACTAGAAACATGTTTTTTAAAATGCTTTAGATTTTATAGCTAATTTTTTAGATTTTATAGCTATCAAGCTAGATATAATCCCGTATAATCAAATCGGAAGGCTGTTTGTCATTCCATTCCACTCCAGATGATTTTATCATCGAATTTGAACTTTTTTCTTCCTCTTTTTTTTTCAAGTTTAGAGTTCTAGACGGAAAGCGGGAAATTCAAATTTCCATGGGGAATGTGTCGATTTACGTCATTCGATGAGGAAAATAGGCTCCGCCCACTTTTTGTGTTGGAGCATCCTGTCTAGAGTGTTCATATAAATATAGGTTTGAAGATTTTAACGTTTAGGGTGTTTCGGAATTCTGAAAATCATAAAAATCAAAATCTTCGGAAATTCTGAAATGTCTAGTTTTGAAAGTTGGATTATCGATATTTTTGTTAATCTGAAAAATTCTGAATTTCAGAA</canonical>
            <polymorphic>AATTGGCTAATTAGAGGATGGGAAAGAAATCAGAGAAGCTTCTCTTCTTTTTTATCCAAAGACATCAAATATTCATTCAGGGAAAAAAAAAAGAGAAAAAGTGTTTACGTCTCCTCTCCACCCCCACACATTACGTATTCTGAGCCTCTTTTTCGGTATTTTTGAGTAATTATAAAACTAATCAGCATGAAAATTTAAATAATTAAAAAAGAGCAAAAAATTTGAAACATATTTCTAGTTGGAATTTTTTCAATACCTTTTCTGGATTATGAGATAAAGGGCATGGAATTTTTTTTTCAAAAAAAAAGGACTCGACTTTTCTGAGCTTCATATCTCAAAAACTAAGAATTTCAGAGCAAAATTTTAAATTACAAAATTGTAGATTTTGAAATTTCTCACATTTTATTTTTTAAATAAGGTCTTTAGCTTTTCCAGTTTTTGAGATATGAATTTTTAAAAATTAAAAAAATTTTGAGCTTAAAATTTTTTTTCGAATTTTYGAACAGTTATATCTCAAAAACTAAAAAAGCTAGAAATTTTTTCTTAACTAGAAACATGTTTTTTAAAATGCTTTAGATTTTATAGCTAATTTTTTAGATTTTATAGCTATCAAGCTAGATATAATCCCGTATAATCAAATCGGAAGGCTGTTTGTCATTCCATTCCACTCCAGATGATTTTATCATCGAATTTGAACTTTTTTCTTCCTCTTTTTTTTTCAAGTTTAGAGTTCTAGACGGAAAGCGGGAAATTCAAATTTCCATGGGGAATGTGTCGATTTACGTCATTCGATGAGGAAAATAGGCTCCGCCCACTTTTTGTGTTGGAGCATCCTGTCTAGAGTGTTCATATAAATATAGGTTTGAAGATTTTAACGTTTAGGGTGTTTCGGAATTCTGAAAATCATAAAAATCAAAATCTTCGGAAATTCTGAAATGTCTAGTTTTGAAAGTTGGATTATCGATATTTTTGTTAATCTGAAAAATTCTGAATTTCAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 491 8</canonical_bands>
                <polymorphic_bands>509 491</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>313 187 179 172 89 38 14 8</canonical_bands>
                <polymorphic_bands>313 195 179 172 89 38 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTTCGGTATTTTTGAGTAA</pcr_primer_p1>
		<pcr_primer_p2>TTGATTATACGGGATTATATCTAGC</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTTCGGTATTTTTGAGTAATTATAAAACTAATCAGCATGAAAATTTAAATAATTAAAAAAGAGCAAAAAATTTGAAACATATTTCTAGTTGGAATTTTTTCAATACCTTTTCTGGATTATGAGATAAAGGGCATGGAATTTTTTTTTCAAAAAAAAAGGACTCGACTTTTCTGAGCTTCATATCTCAAAAACTAAGAATTTCAGAGCAAAATTTTAAATTACAAAATTGTAGATTTTGAAATTTCTCACATTTTATTTTTTAAATAAGGTCTTTAGCTTTTCCAGTTTTTGAGATATGAATTTTTAAAAATTAAAAAAATTTTGAGCTTAAAATTTTTTTTCGAATTTTCGAACAGTTATATCTCAAAAACTAAAAAAGCTAGAAATTTTTTCTTAACTAGAAACATGTTTTTTAAAATGCTTTAGATTTTATAGCTAATTTTTTAGATTTTATAGCTATCAAGCTAGATATAATCCCGTATAATCAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTTCGGTATTTTTGAGTAATTATAAAACTAATCAGCATGAAAATTTAAATAATTAAAAAAGAGCAAAAAATTTGAAACATATTTCTAGTTGGAATTTTTTCAATACCTTTTCTGGATTATGAGATAAAGGGCATGGAATTTTTTTTTCAAAAAAAAAGGACTCGACTTTTCTGAGCTTCATATCTCAAAAACTAAGAATTTCAGAGCAAAATTTTAAATTACAAAATTGTAGATTTTGAAATTTCTCACATTTTATTTTTTAAATAAGGTCTTTAGCTTTTCCAGTTTTTGAGATATGAATTTTTAAAAATTAAAAAAATTTTGAGCTTAAAATTTTTTTTCGAATTTTYGAACAGTTATATCTCAAAAACTAAAAAAGCTAGAAATTTTTTCTTAACTAGAAACATGTTTTTTAAAATGCTTTAGATTTTATAGCTAATTTTTTAGATTTTATAGCTATCAAGCTAGATATAATCCCGTATAATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25543</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>20644</contig_pos>
        <strand>+</strand>
        <context>TAGAGAAGTG[A/G]AATACATCMG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAACAGACTTTATTGTAATTGTAAGTTCCTTACAAGTTGCTAGAGAAGTG</left_flank>
        <right_flank>AATACATCCGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAAC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAAAGTTATAAAAAATTTCAGATGCTACTCATCGGTTGGGCGAACTGGAGGCTCTCAACTGATATCGATTGGCTATGGATGTGAAGACGTGGGTTTTGATTTTAATTTTTATCAAAATTCAAATCCTCGCCTGCAGAAAGGAATCGTAGCTCACGAAGTGGGCCACTCGCTAGGATTCTGGCATGAGCAATCTCGTCCCGATCGTGATCAATACATCCACTTGAGAAAAGAGTGGATCATTAAAGGAACCGACGGAAACTTCGAGAAACGATCTTGGGAAGAAATCGAGGATATGGGAGTGCCATATGATATCGGAAGTGTGATGCATTATGGGTCCAATGCGTTTACCAAGGATTGGGATCAAATTACCATTGAAACACAGGACAAACGGTATCAAGGAACTATTGGACAACGACAAAAACTTTCGTTTATCGATGTAAAGCAAGTGAACAGACTTTATTGTAATTGTAAGTTCCTTACAAGTTGCTAGAGAAGTGGAATACATCCGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAACTCCTTAATTACCCCTAATTACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAACACGGGGGTTACCCAGACCCCAATAACTGCTCGGTTTGTAAATGTCCAGATGGTCTAGGAGGAAAACTATGTGGAAGAGTTGCCAAAGGAACGGATCATGGTAATTAAGTAATTAATTATGCTCTAATTAAGTCAATTTTTAGATAAGTGTGGTGGTGAACTGGTGGCAACTCCAGAGTGGCAAGAAATGATCTATAAAGGGAAGAGAACTTGTAACTGG</canonical>
            <polymorphic>AGAAAAGTTATAAAAAATTTCAGATGCTACTCATCGGTTGGGCGAACTGGAGGCTCTCAACTGATATCGATTGGCTATGGATGTGAAGACGTGGGTTTTGATTTTAATTTTTATCAAAATTCAAATCCTCGCCTGCAGAAAGGAATCGTAGCTCACGAAGTGGGCCACTCGCTAGGATTCTGGCATGAGCAATCTCGTCCCGATCGTGATCAATACATCCACTTGAGAAAAGAGTGGATCATTAAAGGAACCGACGGAAACTTCGAGAAACGATCTTGGGAAGAAATCGAGGATATGGGAGTGCCATATGATATCGGAAGTGTGATGCATTATGGGTCCAATGCGTTTACCAAGGATTGGGATCAAATTACCATTGAAACACAGGACAAACGGTATCAAGGAACTATTGGACAACGACAAAAACTTTCGTTTATCGATGTAAAGCAAGTGAACAGACTTTATTGTAATTGTAAGTTCCTTACAAGTTGCTAGAGAAGTGRAATACATCCGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAACTCCTTAATTACCCCTAATTACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAACACGGGGGTTACCCAGACCCCAATAACTGCTCGGTTTGTAAATGTCCAGATGGTCTAGGAGGAAAACTATGTGGAAGAGTTGCCAAAGGAACGGATCATGGTAATTAAGTAATTAATTATGCTCTAATTAAGTCAATTTTTAGATAAGTGTGGTGGTGAACTGGTGGCAACTCCAGAGTGGCAAGAAATGATCTATAAAGGGAAGAGAACTTGTAACTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCAAGTGAACAGACTTTATTGT</pcr_primer_p1>
		<pcr_primer_p2>AATTAGGGGTAATTAAGGAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>293</pcr_amplicon_size>
		<canonical_amplicon>AGCAAGTGAACAGACTTTATTGTAATTGTAAGTTCCTTACAAGTTGCTAGAGAAGTGGAATACATCCGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAACTCCTTAATTACCCCTAATT</canonical_amplicon>
		<polymorphic_amplicon>AGCAAGTGAACAGACTTTATTGTAATTGTAAGTTCCTTACAAGTTGCTAGAGAAGTGRAATACATCCGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAACTCCTTAATTACCCCTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25544</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>20653</contig_pos>
        <strand>+</strand>
        <context>GRAATACATC[A/C]GAAAAAAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTATTGTAATTGTAAGTTCCTTACAAGTTGCTAGAGAAGTGGAATACATC</left_flank>
        <right_flank>GAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAAAAATTTCAGATGCTACTCATCGGTTGGGCGAACTGGAGGCTCTCAACTGATATCGATTGGCTATGGATGTGAAGACGTGGGTTTTGATTTTAATTTTTATCAAAATTCAAATCCTCGCCTGCAGAAAGGAATCGTAGCTCACGAAGTGGGCCACTCGCTAGGATTCTGGCATGAGCAATCTCGTCCCGATCGTGATCAATACATCCACTTGAGAAAAGAGTGGATCATTAAAGGAACCGACGGAAACTTCGAGAAACGATCTTGGGAAGAAATCGAGGATATGGGAGTGCCATATGATATCGGAAGTGTGATGCATTATGGGTCCAATGCGTTTACCAAGGATTGGGATCAAATTACCATTGAAACACAGGACAAACGGTATCAAGGAACTATTGGACAACGACAAAAACTTTCGTTTATCGATGTAAAGCAAGTGAACAGACTTTATTGTAATTGTAAGTTCCTTACAAGTTGCTAGAGAAGTGGAATACATCCGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAACTCCTTAATTACCCCTAATTACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAACACGGGGGTTACCCAGACCCCAATAACTGCTCGGTTTGTAAATGTCCAGATGGTCTAGGAGGAAAACTATGTGGAAGAGTTGCCAAAGGAACGGATCATGGTAATTAAGTAATTAATTATGCTCTAATTAAGTCAATTTTTAGATAAGTGTGGTGGTGAACTGGTGGCAACTCCAGAGTGGCAAGAAATGATCTATAAAGGGAAGAGAACTTGTAACTGGAGGGTTAAG</canonical>
            <polymorphic>ATAAAAAATTTCAGATGCTACTCATCGGTTGGGCGAACTGGAGGCTCTCAACTGATATCGATTGGCTATGGATGTGAAGACGTGGGTTTTGATTTTAATTTTTATCAAAATTCAAATCCTCGCCTGCAGAAAGGAATCGTAGCTCACGAAGTGGGCCACTCGCTAGGATTCTGGCATGAGCAATCTCGTCCCGATCGTGATCAATACATCCACTTGAGAAAAGAGTGGATCATTAAAGGAACCGACGGAAACTTCGAGAAACGATCTTGGGAAGAAATCGAGGATATGGGAGTGCCATATGATATCGGAAGTGTGATGCATTATGGGTCCAATGCGTTTACCAAGGATTGGGATCAAATTACCATTGAAACACAGGACAAACGGTATCAAGGAACTATTGGACAACGACAAAAACTTTCGTTTATCGATGTAAAGCAAGTGAACAGACTTTATTGTAATTGTAAGTTCCTTACAAGTTGCTAGAGAAGTGGAATACATCMGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAACTCCTTAATTACCCCTAATTACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAACACGGGGGTTACCCAGACCCCAATAACTGCTCGGTTTGTAAATGTCCAGATGGTCTAGGAGGAAAACTATGTGGAAGAGTTGCCAAAGGAACGGATCATGGTAATTAAGTAATTAATTATGCTCTAATTAAGTCAATTTTTAGATAAGTGTGGTGGTGAACTGGTGGCAACTCCAGAGTGGCAAGAAATGATCTATAAAGGGAAGAGAACTTGTAACTGGAGGGTTAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGACTTTATTGTAATTGTAAGTTCC</pcr_primer_p1>
		<pcr_primer_p2>AATTAGGGGTAATTAAGGAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>283</pcr_amplicon_size>
		<canonical_amplicon>CAGACTTTATTGTAATTGTAAGTTCCTTACAAGTTGCTAGAGAAGTGGAATACATCCGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAACTCCTTAATTACCCCTAATT</canonical_amplicon>
		<polymorphic_amplicon>CAGACTTTATTGTAATTGTAAGTTCCTTACAAGTTGCTAGAGAAGTGGAATACATCMGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAACTCCTTAATTACCCCTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25545</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>20749</contig_pos>
        <strand>+</strand>
        <context>AGCAGTCACG[C/T]TTAGAGAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACG</left_flank>
        <right_flank>TTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTTATCAAAATTCAAATCCTCGCCTGCAGAAAGGAATCGTAGCTCACGAAGTGGGCCACTCGCTAGGATTCTGGCATGAGCAATCTCGTCCCGATCGTGATCAATACATCCACTTGAGAAAAGAGTGGATCATTAAAGGAACCGACGGAAACTTCGAGAAACGATCTTGGGAAGAAATCGAGGATATGGGAGTGCCATATGATATCGGAAGTGTGATGCATTATGGGTCCAATGCGTTTACCAAGGATTGGGATCAAATTACCATTGAAACACAGGACAAACGGTATCAAGGAACTATTGGACAACGACAAAAACTTTCGTTTATCGATGTAAAGCAAGTGAACAGACTTTATTGTAATTGTAAGTTCCTTACAAGTTGCTAGAGAAGTGGAATACATCCGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAACTCCTTAATTACCCCTAATTACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAACACGGGGGTTACCCAGACCCCAATAACTGCTCGGTTTGTAAATGTCCAGATGGTCTAGGAGGAAAACTATGTGGAAGAGTTGCCAAAGGAACGGATCATGGTAATTAAGTAATTAATTATGCTCTAATTAAGTCAATTTTTAGATAAGTGTGGTGGTGAACTGGTGGCAACTCCAGAGTGGCAAGAAATGATCTATAAAGGGAAGAGAACTTGTAACTGGAGGGTTAAGGTATACTGTAGCTTTTGGGTGAAGAATGAGCAATCAGGAAATTTATTTAGAGTCCAAATGGAGGCAGAGTTCGTCTGGTGCTCACCGAGCTACGGT</canonical>
            <polymorphic>AATTTTTATCAAAATTCAAATCCTCGCCTGCAGAAAGGAATCGTAGCTCACGAAGTGGGCCACTCGCTAGGATTCTGGCATGAGCAATCTCGTCCCGATCGTGATCAATACATCCACTTGAGAAAAGAGTGGATCATTAAAGGAACCGACGGAAACTTCGAGAAACGATCTTGGGAAGAAATCGAGGATATGGGAGTGCCATATGATATCGGAAGTGTGATGCATTATGGGTCCAATGCGTTTACCAAGGATTGGGATCAAATTACCATTGAAACACAGGACAAACGGTATCAAGGAACTATTGGACAACGACAAAAACTTTCGTTTATCGATGTAAAGCAAGTGAACAGACTTTATTGTAATTGTAAGTTCCTTACAAGTTGCTAGAGAAGTGGAATACATCCGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGYTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAACTCCTTAATTACCCCTAATTACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAACACGGGGGTTACCCAGACCCCAATAACTGCTCGGTTTGTAAATGTCCAGATGGTCTAGGAGGAAAACTATGTGGAAGAGTTGCCAAAGGAACGGATCATGGTAATTAAGTAATTAATTATGCTCTAATTAAGTCAATTTTTAGATAAGTGTGGTGGTGAACTGGTGGCAACTCCAGAGTGGCAAGAAATGATCTATAAAGGGAAGAGAACTTGTAACTGGAGGGTTAAGGTATACTGTAGCTTTTGGGTGAAGAATGAGCAATCAGGAAATTTATTTAGAGTCCAAATGGAGGCAGAGTTCGTCTGGTGCTCACCGAGCTACGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 431 69</canonical_bands>
                <polymorphic_bands>569 431</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTACAAGTTGCTAGAGAAGTG</pcr_primer_p1>
		<pcr_primer_p2>AATTAGGGGTAATTAAGGAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>CCTTACAAGTTGCTAGAGAAGTGGAATACATCCGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAACTCCTTAATTACCCCTAATT</canonical_amplicon>
		<polymorphic_amplicon>CCTTACAAGTTGCTAGAGAAGTGGAATACATCCGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGYTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAACTCCTTAATTACCCCTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25546</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>20781</contig_pos>
        <strand>+</strand>
        <context>GTACACATGA[C/G]GGGGTAAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGA</left_flank>
        <right_flank>GGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAGGAATCGTAGCTCACGAAGTGGGCCACTCGCTAGGATTCTGGCATGAGCAATCTCGTCCCGATCGTGATCAATACATCCACTTGAGAAAAGAGTGGATCATTAAAGGAACCGACGGAAACTTCGAGAAACGATCTTGGGAAGAAATCGAGGATATGGGAGTGCCATATGATATCGGAAGTGTGATGCATTATGGGTCCAATGCGTTTACCAAGGATTGGGATCAAATTACCATTGAAACACAGGACAAACGGTATCAAGGAACTATTGGACAACGACAAAAACTTTCGTTTATCGATGTAAAGCAAGTGAACAGACTTTATTGTAATTGTAAGTTCCTTACAAGTTGCTAGAGAAGTGGAATACATCCGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAACTCCTTAATTACCCCTAATTACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAACACGGGGGTTACCCAGACCCCAATAACTGCTCGGTTTGTAAATGTCCAGATGGTCTAGGAGGAAAACTATGTGGAAGAGTTGCCAAAGGAACGGATCATGGTAATTAAGTAATTAATTATGCTCTAATTAAGTCAATTTTTAGATAAGTGTGGTGGTGAACTGGTGGCAACTCCAGAGTGGCAAGAAATGATCTATAAAGGGAAGAGAACTTGTAACTGGAGGGTTAAGGTATACTGTAGCTTTTGGGTGAAGAATGAGCAATCAGGAAATTTATTTAGAGTCCAAATGGAGGCAGAGTTCGTCTGGTGCTCACCGAGCTACGGTATCAGTGTGCGACGTCATGCAAAGCTTATATC</canonical>
            <polymorphic>GAAAGGAATCGTAGCTCACGAAGTGGGCCACTCGCTAGGATTCTGGCATGAGCAATCTCGTCCCGATCGTGATCAATACATCCACTTGAGAAAAGAGTGGATCATTAAAGGAACCGACGGAAACTTCGAGAAACGATCTTGGGAAGAAATCGAGGATATGGGAGTGCCATATGATATCGGAAGTGTGATGCATTATGGGTCCAATGCGTTTACCAAGGATTGGGATCAAATTACCATTGAAACACAGGACAAACGGTATCAAGGAACTATTGGACAACGACAAAAACTTTCGTTTATCGATGTAAAGCAAGTGAACAGACTTTATTGTAATTGTAAGTTCCTTACAAGTTGCTAGAGAAGTGGAATACATCCGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGASGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAACTCCTTAATTACCCCTAATTACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAACACGGGGGTTACCCAGACCCCAATAACTGCTCGGTTTGTAAATGTCCAGATGGTCTAGGAGGAAAACTATGTGGAAGAGTTGCCAAAGGAACGGATCATGGTAATTAAGTAATTAATTATGCTCTAATTAAGTCAATTTTTAGATAAGTGTGGTGGTGAACTGGTGGCAACTCCAGAGTGGCAAGAAATGATCTATAAAGGGAAGAGAACTTGTAACTGGAGGGTTAAGGTATACTGTAGCTTTTGGGTGAAGAATGAGCAATCAGGAAATTTATTTAGAGTCCAAATGGAGGCAGAGTTCGTCTGGTGCTCACCGAGCTACGGTATCAGTGTGCGACGTCATGCAAAGCTTATATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTACAAGTTGCTAGAGAAGTG</pcr_primer_p1>
		<pcr_primer_p2>AATTAGGGGTAATTAAGGAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>CCTTACAAGTTGCTAGAGAAGTGGAATACATCCGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAACTCCTTAATTACCCCTAATT</canonical_amplicon>
		<polymorphic_amplicon>CCTTACAAGTTGCTAGAGAAGTGGAATACATCCGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGASGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAACTCCTTAATTACCCCTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25547</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>20810</contig_pos>
        <strand>+</strand>
        <context>GCGAGAGGGG[A/G]AGGCGTGGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGG</left_flank>
        <right_flank>AGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAAC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCGCTAGGATTCTGGCATGAGCAATCTCGTCCCGATCGTGATCAATACATCCACTTGAGAAAAGAGTGGATCATTAAAGGAACCGACGGAAACTTCGAGAAACGATCTTGGGAAGAAATCGAGGATATGGGAGTGCCATATGATATCGGAAGTGTGATGCATTATGGGTCCAATGCGTTTACCAAGGATTGGGATCAAATTACCATTGAAACACAGGACAAACGGTATCAAGGAACTATTGGACAACGACAAAAACTTTCGTTTATCGATGTAAAGCAAGTGAACAGACTTTATTGTAATTGTAAGTTCCTTACAAGTTGCTAGAGAAGTGGAATACATCCGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAACTCCTTAATTACCCCTAATTACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAACACGGGGGTTACCCAGACCCCAATAACTGCTCGGTTTGTAAATGTCCAGATGGTCTAGGAGGAAAACTATGTGGAAGAGTTGCCAAAGGAACGGATCATGGTAATTAAGTAATTAATTATGCTCTAATTAAGTCAATTTTTAGATAAGTGTGGTGGTGAACTGGTGGCAACTCCAGAGTGGCAAGAAATGATCTATAAAGGGAAGAGAACTTGTAACTGGAGGGTTAAGGTATACTGTAGCTTTTGGGTGAAGAATGAGCAATCAGGAAATTTATTTAGAGTCCAAATGGAGGCAGAGTTCGTCTGGTGCTCACCGAGCTACGGTATCAGTGTGCGACGTCATGCAAAGCTTATATCGAGATTAAGCATAATACGGATTTCCAGCA</canonical>
            <polymorphic>ACTCGCTAGGATTCTGGCATGAGCAATCTCGTCCCGATCGTGATCAATACATCCACTTGAGAAAAGAGTGGATCATTAAAGGAACCGACGGAAACTTCGAGAAACGATCTTGGGAAGAAATCGAGGATATGGGAGTGCCATATGATATCGGAAGTGTGATGCATTATGGGTCCAATGCGTTTACCAAGGATTGGGATCAAATTACCATTGAAACACAGGACAAACGGTATCAAGGAACTATTGGACAACGACAAAAACTTTCGTTTATCGATGTAAAGCAAGTGAACAGACTTTATTGTAATTGTAAGTTCCTTACAAGTTGCTAGAGAAGTGGAATACATCCGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGRAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAACTCCTTAATTACCCCTAATTACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAACACGGGGGTTACCCAGACCCCAATAACTGCTCGGTTTGTAAATGTCCAGATGGTCTAGGAGGAAAACTATGTGGAAGAGTTGCCAAAGGAACGGATCATGGTAATTAAGTAATTAATTATGCTCTAATTAAGTCAATTTTTAGATAAGTGTGGTGGTGAACTGGTGGCAACTCCAGAGTGGCAAGAAATGATCTATAAAGGGAAGAGAACTTGTAACTGGAGGGTTAAGGTATACTGTAGCTTTTGGGTGAAGAATGAGCAATCAGGAAATTTATTTAGAGTCCAAATGGAGGCAGAGTTCGTCTGGTGCTCACCGAGCTACGGTATCAGTGTGCGACGTCATGCAAAGCTTATATCGAGATTAAGCATAATACGGATTTCCAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTACAAGTTGCTAGAGAAGTG</pcr_primer_p1>
		<pcr_primer_p2>AATTAGGGGTAATTAAGGAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>CCTTACAAGTTGCTAGAGAAGTGGAATACATCCGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAACTCCTTAATTACCCCTAATT</canonical_amplicon>
		<polymorphic_amplicon>CCTTACAAGTTGCTAGAGAAGTGGAATACATCCGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGRAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAACTCCTTAATTACCCCTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25548</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>20848</contig_pos>
        <strand>+</strand>
        <context>AAAAATCCAG[C/G]GAAAATKAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAG</left_flank>
        <right_flank>GAAAATTAAAACTCCTTAATTACCCCTAATTACTCCCAAATTTTCAGCGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTGATCAATACATCCACTTGAGAAAAGAGTGGATCATTAAAGGAACCGACGGAAACTTCGAGAAACGATCTTGGGAAGAAATCGAGGATATGGGAGTGCCATATGATATCGGAAGTGTGATGCATTATGGGTCCAATGCGTTTACCAAGGATTGGGATCAAATTACCATTGAAACACAGGACAAACGGTATCAAGGAACTATTGGACAACGACAAAAACTTTCGTTTATCGATGTAAAGCAAGTGAACAGACTTTATTGTAATTGTAAGTTCCTTACAAGTTGCTAGAGAAGTGGAATACATCCGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAACTCCTTAATTACCCCTAATTACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAACACGGGGGTTACCCAGACCCCAATAACTGCTCGGTTTGTAAATGTCCAGATGGTCTAGGAGGAAAACTATGTGGAAGAGTTGCCAAAGGAACGGATCATGGTAATTAAGTAATTAATTATGCTCTAATTAAGTCAATTTTTAGATAAGTGTGGTGGTGAACTGGTGGCAACTCCAGAGTGGCAAGAAATGATCTATAAAGGGAAGAGAACTTGTAACTGGAGGGTTAAGGTATACTGTAGCTTTTGGGTGAAGAATGAGCAATCAGGAAATTTATTTAGAGTCCAAATGGAGGCAGAGTTCGTCTGGTGCTCACCGAGCTACGGTATCAGTGTGCGACGTCATGCAAAGCTTATATCGAGATTAAGCATAATACGGATTTCCAGCAAACTGGCTTCAGAGTTTGGTAAGTTATTTTTAGGACAT</canonical>
            <polymorphic>CGTGATCAATACATCCACTTGAGAAAAGAGTGGATCATTAAAGGAACCGACGGAAACTTCGAGAAACGATCTTGGGAAGAAATCGAGGATATGGGAGTGCCATATGATATCGGAAGTGTGATGCATTATGGGTCCAATGCGTTTACCAAGGATTGGGATCAAATTACCATTGAAACACAGGACAAACGGTATCAAGGAACTATTGGACAACGACAAAAACTTTCGTTTATCGATGTAAAGCAAGTGAACAGACTTTATTGTAATTGTAAGTTCCTTACAAGTTGCTAGAGAAGTGGAATACATCCGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGSGAAAATTAAAACTCCTTAATTACCCCTAATTACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAACACGGGGGTTACCCAGACCCCAATAACTGCTCGGTTTGTAAATGTCCAGATGGTCTAGGAGGAAAACTATGTGGAAGAGTTGCCAAAGGAACGGATCATGGTAATTAAGTAATTAATTATGCTCTAATTAAGTCAATTTTTAGATAAGTGTGGTGGTGAACTGGTGGCAACTCCAGAGTGGCAAGAAATGATCTATAAAGGGAAGAGAACTTGTAACTGGAGGGTTAAGGTATACTGTAGCTTTTGGGTGAAGAATGAGCAATCAGGAAATTTATTTAGAGTCCAAATGGAGGCAGAGTTCGTCTGGTGCTCACCGAGCTACGGTATCAGTGTGCGACGTCATGCAAAGCTTATATCGAGATTAAGCATAATACGGATTTCCAGCAAACTGGCTTCAGAGTTTGGTAAGTTATTTTTAGGACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>504 350 146</canonical_bands>
                <polymorphic_bands>854 146</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGCATTTGACCACTGAG</pcr_primer_p1>
		<pcr_primer_p2>TTGACATGCAAGTGCTACTG</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>AAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAACTCCTTAATTACCCCTAATTACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGSGAAAATTAAAACTCCTTAATTACCCCTAATTACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25549</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>20855</contig_pos>
        <strand>+</strand>
        <context>CAGSGAAAAT[G/T]AAAACTCCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAAT</left_flank>
        <right_flank>AAAACTCCTTAATTACCCCTAATTACTCCCAAATTTTCAGCGGTTTGCCC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATACATCCACTTGAGAAAAGAGTGGATCATTAAAGGAACCGACGGAAACTTCGAGAAACGATCTTGGGAAGAAATCGAGGATATGGGAGTGCCATATGATATCGGAAGTGTGATGCATTATGGGTCCAATGCGTTTACCAAGGATTGGGATCAAATTACCATTGAAACACAGGACAAACGGTATCAAGGAACTATTGGACAACGACAAAAACTTTCGTTTATCGATGTAAAGCAAGTGAACAGACTTTATTGTAATTGTAAGTTCCTTACAAGTTGCTAGAGAAGTGGAATACATCCGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAACTCCTTAATTACCCCTAATTACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAACACGGGGGTTACCCAGACCCCAATAACTGCTCGGTTTGTAAATGTCCAGATGGTCTAGGAGGAAAACTATGTGGAAGAGTTGCCAAAGGAACGGATCATGGTAATTAAGTAATTAATTATGCTCTAATTAAGTCAATTTTTAGATAAGTGTGGTGGTGAACTGGTGGCAACTCCAGAGTGGCAAGAAATGATCTATAAAGGGAAGAGAACTTGTAACTGGAGGGTTAAGGTATACTGTAGCTTTTGGGTGAAGAATGAGCAATCAGGAAATTTATTTAGAGTCCAAATGGAGGCAGAGTTCGTCTGGTGCTCACCGAGCTACGGTATCAGTGTGCGACGTCATGCAAAGCTTATATCGAGATTAAGCATAATACGGATTTCCAGCAAACTGGCTTCAGAGTTTGGTAAGTTATTTTTAGGACATCCGGACA</canonical>
            <polymorphic>AATACATCCACTTGAGAAAAGAGTGGATCATTAAAGGAACCGACGGAAACTTCGAGAAACGATCTTGGGAAGAAATCGAGGATATGGGAGTGCCATATGATATCGGAAGTGTGATGCATTATGGGTCCAATGCGTTTACCAAGGATTGGGATCAAATTACCATTGAAACACAGGACAAACGGTATCAAGGAACTATTGGACAACGACAAAAACTTTCGTTTATCGATGTAAAGCAAGTGAACAGACTTTATTGTAATTGTAAGTTCCTTACAAGTTGCTAGAGAAGTGGAATACATCCGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATKAAAACTCCTTAATTACCCCTAATTACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAACACGGGGGTTACCCAGACCCCAATAACTGCTCGGTTTGTAAATGTCCAGATGGTCTAGGAGGAAAACTATGTGGAAGAGTTGCCAAAGGAACGGATCATGGTAATTAAGTAATTAATTATGCTCTAATTAAGTCAATTTTTAGATAAGTGTGGTGGTGAACTGGTGGCAACTCCAGAGTGGCAAGAAATGATCTATAAAGGGAAGAGAACTTGTAACTGGAGGGTTAAGGTATACTGTAGCTTTTGGGTGAAGAATGAGCAATCAGGAAATTTATTTAGAGTCCAAATGGAGGCAGAGTTCGTCTGGTGCTCACCGAGCTACGGTATCAGTGTGCGACGTCATGCAAAGCTTATATCGAGATTAAGCATAATACGGATTTCCAGCAAACTGGCTTCAGAGTTTGGTAAGTTATTTTTAGGACATCCGGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>448 165 137 97 69 31 20 15 10 8</canonical_bands>
                <polymorphic_bands>448 165 137 97 69 31 30 15 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>242 163 154 140 134 100 14 11 11 10 9 8 4</canonical_bands>
                <polymorphic_bands>256 163 154 140 134 100 11 11 10 9 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGCATTTGACCACTGAG</pcr_primer_p1>
		<pcr_primer_p2>TTGACATGCAAGTGCTACTG</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>AAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAACTCCTTAATTACCCCTAATTACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATKAAAACTCCTTAATTACCCCTAATTACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25550</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>20930</contig_pos>
        <strand>+</strand>
        <context>GTCAACACGG[G/T]GGTTACCCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAACACGG</left_flank>
        <right_flank>GGTTACCCAGACCCCAATAACTGCTCGGTTTGTAAATGTCCAGATGGTCT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGAGGATATGGGAGTGCCATATGATATCGGAAGTGTGATGCATTATGGGTCCAATGCGTTTACCAAGGATTGGGATCAAATTACCATTGAAACACAGGACAAACGGTATCAAGGAACTATTGGACAACGACAAAAACTTTCGTTTATCGATGTAAAGCAAGTGAACAGACTTTATTGTAATTGTAAGTTCCTTACAAGTTGCTAGAGAAGTGGAATACATCCGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAACTCCTTAATTACCCCTAATTACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAACACGGGGGTTACCCAGACCCCAATAACTGCTCGGTTTGTAAATGTCCAGATGGTCTAGGAGGAAAACTATGTGGAAGAGTTGCCAAAGGAACGGATCATGGTAATTAAGTAATTAATTATGCTCTAATTAAGTCAATTTTTAGATAAGTGTGGTGGTGAACTGGTGGCAACTCCAGAGTGGCAAGAAATGATCTATAAAGGGAAGAGAACTTGTAACTGGAGGGTTAAGGTATACTGTAGCTTTTGGGTGAAGAATGAGCAATCAGGAAATTTATTTAGAGTCCAAATGGAGGCAGAGTTCGTCTGGTGCTCACCGAGCTACGGTATCAGTGTGCGACGTCATGCAAAGCTTATATCGAGATTAAGCATAATACGGATTTCCAGCAAACTGGCTTCAGAGTTTGGTAAGTTATTTTTAGGACATCCGGACACACAGACACACTTTTAGCTGCTTCAACAAAACCTATGATGTCATTTCCGACCAATCGGAGGCACTTATTTTGTCC</canonical>
            <polymorphic>TCGAGGATATGGGAGTGCCATATGATATCGGAAGTGTGATGCATTATGGGTCCAATGCGTTTACCAAGGATTGGGATCAAATTACCATTGAAACACAGGACAAACGGTATCAAGGAACTATTGGACAACGACAAAAACTTTCGTTTATCGATGTAAAGCAAGTGAACAGACTTTATTGTAATTGTAAGTTCCTTACAAGTTGCTAGAGAAGTGGAATACATCCGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAACTCCTTAATTACCCCTAATTACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAACACGGKGGTTACCCAGACCCCAATAACTGCTCGGTTTGTAAATGTCCAGATGGTCTAGGAGGAAAACTATGTGGAAGAGTTGCCAAAGGAACGGATCATGGTAATTAAGTAATTAATTATGCTCTAATTAAGTCAATTTTTAGATAAGTGTGGTGGTGAACTGGTGGCAACTCCAGAGTGGCAAGAAATGATCTATAAAGGGAAGAGAACTTGTAACTGGAGGGTTAAGGTATACTGTAGCTTTTGGGTGAAGAATGAGCAATCAGGAAATTTATTTAGAGTCCAAATGGAGGCAGAGTTCGTCTGGTGCTCACCGAGCTACGGTATCAGTGTGCGACGTCATGCAAAGCTTATATCGAGATTAAGCATAATACGGATTTCCAGCAAACTGGCTTCAGAGTTTGGTAAGTTATTTTTAGGACATCCGGACACACAGACACACTTTTAGCTGCTTCAACAAAACCTATGATGTCATTTCCGACCAATCGGAGGCACTTATTTTGTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTAATTACTCCCAAATTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>TTATAGATCATTTCTTGCCACTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTAATTACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAACACGGGGGTTACCCAGACCCCAATAACTGCTCGGTTTGTAAATGTCCAGATGGTCTAGGAGGAAAACTATGTGGAAGAGTTGCCAAAGGAACGGATCATGGTAATTAAGTAATTAATTATGCTCTAATTAAGTCAATTTTTAGATAAGTGTGGTGGTGAACTGGTGGCAACTCCAGAGTGGCAAGAAATGATCTATAA</canonical_amplicon>
		<polymorphic_amplicon>CCTAATTACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAACACGGKGGTTACCCAGACCCCAATAACTGCTCGGTTTGTAAATGTCCAGATGGTCTAGGAGGAAAACTATGTGGAAGAGTTGCCAAAGGAACGGATCATGGTAATTAAGTAATTAATTATGCTCTAATTAAGTCAATTTTTAGATAAGTGTGGTGGTGAACTGGTGGCAACTCCAGAGTGGCAAGAAATGATCTATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25551</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>21008</contig_pos>
        <strand>+</strand>
        <context>GAAGAGTTGC[C/G]AAAGGAACGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTTTGTAAATGTCCAGATGGTCTAGGAGGAAAACTATGTGGAAGAGTTGC</left_flank>
        <right_flank>AAAGGAACGGATCATGGTAATTAAGTAATTAATTATGCTCTAATTAAGTC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTACCATTGAAACACAGGACAAACGGTATCAAGGAACTATTGGACAACGACAAAAACTTTCGTTTATCGATGTAAAGCAAGTGAACAGACTTTATTGTAATTGTAAGTTCCTTACAAGTTGCTAGAGAAGTGGAATACATCCGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAACTCCTTAATTACCCCTAATTACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAACACGGGGGTTACCCAGACCCCAATAACTGCTCGGTTTGTAAATGTCCAGATGGTCTAGGAGGAAAACTATGTGGAAGAGTTGCCAAAGGAACGGATCATGGTAATTAAGTAATTAATTATGCTCTAATTAAGTCAATTTTTAGATAAGTGTGGTGGTGAACTGGTGGCAACTCCAGAGTGGCAAGAAATGATCTATAAAGGGAAGAGAACTTGTAACTGGAGGGTTAAGGTATACTGTAGCTTTTGGGTGAAGAATGAGCAATCAGGAAATTTATTTAGAGTCCAAATGGAGGCAGAGTTCGTCTGGTGCTCACCGAGCTACGGTATCAGTGTGCGACGTCATGCAAAGCTTATATCGAGATTAAGCATAATACGGATTTCCAGCAAACTGGCTTCAGAGTTTGGTAAGTTATTTTTAGGACATCCGGACACACAGACACACTTTTAGCTGCTTCAACAAAACCTATGATGTCATTTCCGACCAATCGGAGGCACTTATTTTGTCCAATGCCAATATTGTGGATTATGAAGTTTCTTATAAGCTTCAGTGGATTCAAGGTAGGACATCCATAAGGCCAGGGCTG</canonical>
            <polymorphic>AAATTACCATTGAAACACAGGACAAACGGTATCAAGGAACTATTGGACAACGACAAAAACTTTCGTTTATCGATGTAAAGCAAGTGAACAGACTTTATTGTAATTGTAAGTTCCTTACAAGTTGCTAGAGAAGTGGAATACATCCGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAACTCCTTAATTACCCCTAATTACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAACACGGGGGTTACCCAGACCCCAATAACTGCTCGGTTTGTAAATGTCCAGATGGTCTAGGAGGAAAACTATGTGGAAGAGTTGCSAAAGGAACGGATCATGGTAATTAAGTAATTAATTATGCTCTAATTAAGTCAATTTTTAGATAAGTGTGGTGGTGAACTGGTGGCAACTCCAGAGTGGCAAGAAATGATCTATAAAGGGAAGAGAACTTGTAACTGGAGGGTTAAGGTATACTGTAGCTTTTGGGTGAAGAATGAGCAATCAGGAAATTTATTTAGAGTCCAAATGGAGGCAGAGTTCGTCTGGTGCTCACCGAGCTACGGTATCAGTGTGCGACGTCATGCAAAGCTTATATCGAGATTAAGCATAATACGGATTTCCAGCAAACTGGCTTCAGAGTTTGGTAAGTTATTTTTAGGACATCCGGACACACAGACACACTTTTAGCTGCTTCAACAAAACCTATGATGTCATTTCCGACCAATCGGAGGCACTTATTTTGTCCAATGCCAATATTGTGGATTATGAAGTTTCTTATAAGCTTCAGTGGATTCAAGGTAGGACATCCATAAGGCCAGGGCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTAATTACTCCCAAATTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>TTATAGATCATTTCTTGCCACTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTAATTACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAACACGGGGGTTACCCAGACCCCAATAACTGCTCGGTTTGTAAATGTCCAGATGGTCTAGGAGGAAAACTATGTGGAAGAGTTGCCAAAGGAACGGATCATGGTAATTAAGTAATTAATTATGCTCTAATTAAGTCAATTTTTAGATAAGTGTGGTGGTGAACTGGTGGCAACTCCAGAGTGGCAAGAAATGATCTATAA</canonical_amplicon>
		<polymorphic_amplicon>CCTAATTACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAACACGGGGGTTACCCAGACCCCAATAACTGCTCGGTTTGTAAATGTCCAGATGGTCTAGGAGGAAAACTATGTGGAAGAGTTGCSAAAGGAACGGATCATGGTAATTAAGTAATTAATTATGCTCTAATTAAGTCAATTTTTAGATAAGTGTGGTGGTGAACTGGTGGCAACTCCAGAGTGGCAAGAAATGATCTATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25552</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>21058</contig_pos>
        <strand>+</strand>
        <context>CTAATTAAGT[C/T]AATTTTTAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAAGGAACGGATCATGGTAATTAAGTAATTAATTATGCTCTAATTAAGT</left_flank>
        <right_flank>AATTTTTAGATAAGTGTGGTGGTGAACTGGTGGCAACTCCAGAGTGGCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACAAAAACTTTCGTTTATCGATGTAAAGCAAGTGAACAGACTTTATTGTAATTGTAAGTTCCTTACAAGTTGCTAGAGAAGTGGAATACATCCGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAACTCCTTAATTACCCCTAATTACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAACACGGGGGTTACCCAGACCCCAATAACTGCTCGGTTTGTAAATGTCCAGATGGTCTAGGAGGAAAACTATGTGGAAGAGTTGCCAAAGGAACGGATCATGGTAATTAAGTAATTAATTATGCTCTAATTAAGTCAATTTTTAGATAAGTGTGGTGGTGAACTGGTGGCAACTCCAGAGTGGCAAGAAATGATCTATAAAGGGAAGAGAACTTGTAACTGGAGGGTTAAGGTATACTGTAGCTTTTGGGTGAAGAATGAGCAATCAGGAAATTTATTTAGAGTCCAAATGGAGGCAGAGTTCGTCTGGTGCTCACCGAGCTACGGTATCAGTGTGCGACGTCATGCAAAGCTTATATCGAGATTAAGCATAATACGGATTTCCAGCAAACTGGCTTCAGAGTTTGGTAAGTTATTTTTAGGACATCCGGACACACAGACACACTTTTAGCTGCTTCAACAAAACCTATGATGTCATTTCCGACCAATCGGAGGCACTTATTTTGTCCAATGCCAATATTGTGGATTATGAAGTTTCTTATAAGCTTCAGTGGATTCAAGGTAGGACATCCATAAGGCCAGGGCTGTCGTACGTCCGGCCGCGGCCGGCCGATAATTCGGTTTGACCGTGATCTTG</canonical>
            <polymorphic>CGACAAAAACTTTCGTTTATCGATGTAAAGCAAGTGAACAGACTTTATTGTAATTGTAAGTTCCTTACAAGTTGCTAGAGAAGTGGAATACATCCGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAACTCCTTAATTACCCCTAATTACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAACACGGGGGTTACCCAGACCCCAATAACTGCTCGGTTTGTAAATGTCCAGATGGTCTAGGAGGAAAACTATGTGGAAGAGTTGCCAAAGGAACGGATCATGGTAATTAAGTAATTAATTATGCTCTAATTAAGTYAATTTTTAGATAAGTGTGGTGGTGAACTGGTGGCAACTCCAGAGTGGCAAGAAATGATCTATAAAGGGAAGAGAACTTGTAACTGGAGGGTTAAGGTATACTGTAGCTTTTGGGTGAAGAATGAGCAATCAGGAAATTTATTTAGAGTCCAAATGGAGGCAGAGTTCGTCTGGTGCTCACCGAGCTACGGTATCAGTGTGCGACGTCATGCAAAGCTTATATCGAGATTAAGCATAATACGGATTTCCAGCAAACTGGCTTCAGAGTTTGGTAAGTTATTTTTAGGACATCCGGACACACAGACACACTTTTAGCTGCTTCAACAAAACCTATGATGTCATTTCCGACCAATCGGAGGCACTTATTTTGTCCAATGCCAATATTGTGGATTATGAAGTTTCTTATAAGCTTCAGTGGATTCAAGGTAGGACATCCATAAGGCCAGGGCTGTCGTACGTCCGGCCGCGGCCGGCCGATAATTCGGTTTGACCGTGATCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTAATTACTCCCAAATTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>TTATAGATCATTTCTTGCCACTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTAATTACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAACACGGGGGTTACCCAGACCCCAATAACTGCTCGGTTTGTAAATGTCCAGATGGTCTAGGAGGAAAACTATGTGGAAGAGTTGCCAAAGGAACGGATCATGGTAATTAAGTAATTAATTATGCTCTAATTAAGTCAATTTTTAGATAAGTGTGGTGGTGAACTGGTGGCAACTCCAGAGTGGCAAGAAATGATCTATAA</canonical_amplicon>
		<polymorphic_amplicon>CCTAATTACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAACACGGGGGTTACCCAGACCCCAATAACTGCTCGGTTTGTAAATGTCCAGATGGTCTAGGAGGAAAACTATGTGGAAGAGTTGCCAAAGGAACGGATCATGGTAATTAAGTAATTAATTATGCTCTAATTAAGTYAATTTTTAGATAAGTGTGGTGGTGAACTGGTGGCAACTCCAGAGTGGCAAGAAATGATCTATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25553</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>21087</contig_pos>
        <strand>+</strand>
        <context>GTGGTGAACT[G/T]GTGGCAACTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTAATTATGCTCTAATTAAGTCAATTTTTAGATAAGTGTGGTGGTGAACT</left_flank>
        <right_flank>GTGGCAACTCCAGAGTGGCAAGAAATGATCTATAAAGGGAAGAGAACTTG</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAAGTGAACAGACTTTATTGTAATTGTAAGTTCCTTACAAGTTGCTAGAGAAGTGGAATACATCCGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAACTCCTTAATTACCCCTAATTACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAACACGGGGGTTACCCAGACCCCAATAACTGCTCGGTTTGTAAATGTCCAGATGGTCTAGGAGGAAAACTATGTGGAAGAGTTGCCAAAGGAACGGATCATGGTAATTAAGTAATTAATTATGCTCTAATTAAGTCAATTTTTAGATAAGTGTGGTGGTGAACTGGTGGCAACTCCAGAGTGGCAAGAAATGATCTATAAAGGGAAGAGAACTTGTAACTGGAGGGTTAAGGTATACTGTAGCTTTTGGGTGAAGAATGAGCAATCAGGAAATTTATTTAGAGTCCAAATGGAGGCAGAGTTCGTCTGGTGCTCACCGAGCTACGGTATCAGTGTGCGACGTCATGCAAAGCTTATATCGAGATTAAGCATAATACGGATTTCCAGCAAACTGGCTTCAGAGTTTGGTAAGTTATTTTTAGGACATCCGGACACACAGACACACTTTTAGCTGCTTCAACAAAACCTATGATGTCATTTCCGACCAATCGGAGGCACTTATTTTGTCCAATGCCAATATTGTGGATTATGAAGTTTCTTATAAGCTTCAGTGGATTCAAGGTAGGACATCCATAAGGCCAGGGCTGTCGTACGTCCGGCCGCGGCCGGCCGATAATTCGGTTTGACCGTGATCTTGTACCTAGACCAAAATACTCTACAGTAATC</canonical>
            <polymorphic>GCAAGTGAACAGACTTTATTGTAATTGTAAGTTCCTTACAAGTTGCTAGAGAAGTGGAATACATCCGAAAAAAAGAAAAAAGCATTTGACCACTGAGCGGATCGAACGCCCAACCTTTCGATCTGGAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGCTTAGAGAGAAGGGCAGAGGGCGTACACATGAGGGGGTAAAAGAGGGGGAGGCGAGAGGGGGAGGCGTGGGGCAAATGTCATGTGTTAAAAAAATCCAGGGAAAATTAAAACTCCTTAATTACCCCTAATTACTCCCAAATTTTCAGCGGTTTGCCCAGTAGCACTTGCATGTCAACACGGGGGTTACCCAGACCCCAATAACTGCTCGGTTTGTAAATGTCCAGATGGTCTAGGAGGAAAACTATGTGGAAGAGTTGCCAAAGGAACGGATCATGGTAATTAAGTAATTAATTATGCTCTAATTAAGTCAATTTTTAGATAAGTGTGGTGGTGAACTKGTGGCAACTCCAGAGTGGCAAGAAATGATCTATAAAGGGAAGAGAACTTGTAACTGGAGGGTTAAGGTATACTGTAGCTTTTGGGTGAAGAATGAGCAATCAGGAAATTTATTTAGAGTCCAAATGGAGGCAGAGTTCGTCTGGTGCTCACCGAGCTACGGTATCAGTGTGCGACGTCATGCAAAGCTTATATCGAGATTAAGCATAATACGGATTTCCAGCAAACTGGCTTCAGAGTTTGGTAAGTTATTTTTAGGACATCCGGACACACAGACACACTTTTAGCTGCTTCAACAAAACCTATGATGTCATTTCCGACCAATCGGAGGCACTTATTTTGTCCAATGCCAATATTGTGGATTATGAAGTTTCTTATAAGCTTCAGTGGATTCAAGGTAGGACATCCATAAGGCCAGGGCTGTCGTACGTCCGGCCGCGGCCGGCCGATAATTCGGTTTGACCGTGATCTTGTACCTAGACCAAAATACTCTACAGTAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAAATGTCCAGATGGTCTAGG</pcr_primer_p1>
		<pcr_primer_p2>TGGACTCTAAATAAATTTCCTGAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTAAATGTCCAGATGGTCTAGGAGGAAAACTATGTGGAAGAGTTGCCAAAGGAACGGATCATGGTAATTAAGTAATTAATTATGCTCTAATTAAGTCAATTTTTAGATAAGTGTGGTGGTGAACTGGTGGCAACTCCAGAGTGGCAAGAAATGATCTATAAAGGGAAGAGAACTTGTAACTGGAGGGTTAAGGTATACTGTAGCTTTTGGGTGAAGAATGAGCAATCAGGAAATTTATTTAGAGTCCA</canonical_amplicon>
		<polymorphic_amplicon>GTAAATGTCCAGATGGTCTAGGAGGAAAACTATGTGGAAGAGTTGCCAAAGGAACGGATCATGGTAATTAAGTAATTAATTATGCTCTAATTAAGTCAATTTTTAGATAAGTGTGGTGGTGAACTKGTGGCAACTCCAGAGTGGCAAGAAATGATCTATAAAGGGAAGAGAACTTGTAACTGGAGGGTTAAGGTATACTGTAGCTTTTGGGTGAAGAATGAGCAATCAGGAAATTTATTTAGAGTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25554</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>87191</contig_pos>
        <strand>+</strand>
        <context>aactacaaaa[A/G]tgaagktcta</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAA</left_flank>
        <right_flank>TGAAGTTCTAGTTTTGTTTAGTATTGGCGCAAAATTTCATATTAATCGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCTAGAGTGTCTCGCTGTCTCTTCAAATCCTTGTATAGACGAGCTAGAAACCATAGAGAAGGCAGGAAACTGAAAATAACCAAAACTAAACTTCAAACTTTTCGAAAATGCAAAAATTACAGTGAAGACGAAATTGCGCTCTATTGGACATGTTAACTTTGCCCGACTATATCTTGGTTACTGTAAAAGATATCAAAAAGTGCTCAACTAGCAAAATGTTTATCATGATATCAACAGCATTTTATAAGTTTAGAAATTTTCGATATCTCTTACAGTAACTGAGATATAAATAGTCGAAGATAGGATATCCAATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTTTTGTTTAGTATTGGCGCAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCGAGCATTGGAGCCTGTAATAGAATGATAGCTTTAATCAAATTTATTTCGATTACTGTAACAGCTAGCTAATAATGTTTAACTAACAAAATATTTGTTATATTATGGTTAACATTTTATCAATTGACCACTTTTTGATATTTATTATAGGAGCCGAGATAATGGACGTCACCTAGCAAGTCAAGTGATGGCGCCAAGCGCGTAGCTCAGCAGCGCCCAGTTTCAGCTTTACTATCTCGGTAACTAATAAAATGTTGCTAATCCTATGATAAATAATTTGTCAGTTGACTACTTTTTGATATCTTTCTCAGGAAATGAGATATAATAAATCTAGTCAAAGTTGAGAACTACGGTATCTATTCTTCTTCCTCGAATAACAAATTTTCCTGTCCTTGAACTTTTTCTTCTTATTATTATTA</canonical>
            <polymorphic>GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCTAGAGTGTCTCGCTGTCTCTTCAAATCCTTGTATAGACGAGCTAGAAACCATAGAGAAGGCAGGAAACTGAAAATAACCAAAACTAAACTTCAAACTTTTCGAAAATGCAAAAATTACAGTGAAGACGAAATTGCGCTCTATTGGACATGTTAACTTTGCCCGACTATATCTTGGTTACTGTAAAAGATATCAAAAAGTGCTCAACTAGCAAAATGTTTATCATGATATCAACAGCATTTTATAAGTTTAGAAATTTTCGATATCTCTTACAGTAACTGAGATATAAATAGTCGAAGATAGGATATCCAATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAARTGAAGTTCTAGTTTTGTTTAGTATTGGCGCAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCGAGCATTGGAGCCTGTAATAGAATGATAGCTTTAATCAAATTTATTTCGATTACTGTAACAGCTAGCTAATAATGTTTAACTAACAAAATATTTGTTATATTATGGTTAACATTTTATCAATTGACCACTTTTTGATATTTATTATAGGAGCCGAGATAATGGACGTCACCTAGCAAGTCAAGTGATGGCGCCAAGCGCGTAGCTCAGCAGCGCCCAGTTTCAGCTTTACTATCTCGGTAACTAATAAAATGTTGCTAATCCTATGATAAATAATTTGTCAGTTGACTACTTTTTGATATCTTTCTCAGGAAATGAGATATAATAAATCTAGTCAAAGTTGAGAACTACGGTATCTATTCTTCTTCCTCGAATAACAAATTTTCCTGTCCTTGAACTTTTTCTTCTTATTATTATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>232 209 119 115 78 60 41 34 19 18 17 17 16 12 6 4 3</canonical_bands>
                <polymorphic_bands>243 232 119 115 78 60 41 19 18 17 17 16 12 6 4 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATCCAATAGAGCGCACTTC</pcr_primer_p1>
		<pcr_primer_p2>CGCTACATCGTCCTACAAAT</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>ATATCCAATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTTTTGTTTAGTATTGGCGCAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCG</canonical_amplicon>
		<polymorphic_amplicon>ATATCCAATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAARTGAAGTTCTAGTTTTGTTTAGTATTGGCGCAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25555</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>87197</contig_pos>
        <strand>+</strand>
        <context>aaaartgaag[G/T]tctagtyttg</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAG</left_flank>
        <right_flank>TCTAGTTTTGTTTAGTATTGGCGCAAAATTTCATATTAATCGAACAAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCTAGAGTGTCTCGCTGTCTCTTCAAATCCTTGTATAGACGAGCTAGAAACCATAGAGAAGGCAGGAAACTGAAAATAACCAAAACTAAACTTCAAACTTTTCGAAAATGCAAAAATTACAGTGAAGACGAAATTGCGCTCTATTGGACATGTTAACTTTGCCCGACTATATCTTGGTTACTGTAAAAGATATCAAAAAGTGCTCAACTAGCAAAATGTTTATCATGATATCAACAGCATTTTATAAGTTTAGAAATTTTCGATATCTCTTACAGTAACTGAGATATAAATAGTCGAAGATAGGATATCCAATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTTTTGTTTAGTATTGGCGCAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCGAGCATTGGAGCCTGTAATAGAATGATAGCTTTAATCAAATTTATTTCGATTACTGTAACAGCTAGCTAATAATGTTTAACTAACAAAATATTTGTTATATTATGGTTAACATTTTATCAATTGACCACTTTTTGATATTTATTATAGGAGCCGAGATAATGGACGTCACCTAGCAAGTCAAGTGATGGCGCCAAGCGCGTAGCTCAGCAGCGCCCAGTTTCAGCTTTACTATCTCGGTAACTAATAAAATGTTGCTAATCCTATGATAAATAATTTGTCAGTTGACTACTTTTTGATATCTTTCTCAGGAAATGAGATATAATAAATCTAGTCAAAGTTGAGAACTACGGTATCTATTCTTCTTCCTCGAATAACAAATTTTCCTGTCCTTGAACTTTTTCTTCTTATTATTATTATTCATT</canonical>
            <polymorphic>GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCTAGAGTGTCTCGCTGTCTCTTCAAATCCTTGTATAGACGAGCTAGAAACCATAGAGAAGGCAGGAAACTGAAAATAACCAAAACTAAACTTCAAACTTTTCGAAAATGCAAAAATTACAGTGAAGACGAAATTGCGCTCTATTGGACATGTTAACTTTGCCCGACTATATCTTGGTTACTGTAAAAGATATCAAAAAGTGCTCAACTAGCAAAATGTTTATCATGATATCAACAGCATTTTATAAGTTTAGAAATTTTCGATATCTCTTACAGTAACTGAGATATAAATAGTCGAAGATAGGATATCCAATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGKTCTAGTTTTGTTTAGTATTGGCGCAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCGAGCATTGGAGCCTGTAATAGAATGATAGCTTTAATCAAATTTATTTCGATTACTGTAACAGCTAGCTAATAATGTTTAACTAACAAAATATTTGTTATATTATGGTTAACATTTTATCAATTGACCACTTTTTGATATTTATTATAGGAGCCGAGATAATGGACGTCACCTAGCAAGTCAAGTGATGGCGCCAAGCGCGTAGCTCAGCAGCGCCCAGTTTCAGCTTTACTATCTCGGTAACTAATAAAATGTTGCTAATCCTATGATAAATAATTTGTCAGTTGACTACTTTTTGATATCTTTCTCAGGAAATGAGATATAATAAATCTAGTCAAAGTTGAGAACTACGGTATCTATTCTTCTTCCTCGAATAACAAATTTTCCTGTCCTTGAACTTTTTCTTCTTATTATTATTATTCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATCCAATAGAGCGCACTTC</pcr_primer_p1>
		<pcr_primer_p2>CGCTACATCGTCCTACAAAT</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>ATATCCAATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTTTTGTTTAGTATTGGCGCAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCG</canonical_amplicon>
		<polymorphic_amplicon>ATATCCAATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGKTCTAGTTTTGTTTAGTATTGGCGCAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25556</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>87204</contig_pos>
        <strand>+</strand>
        <context>aagktctagt[C/T]ttgtttagta</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGT</left_flank>
        <right_flank>TTGTTTAGTATTGGCGCAAAATTTCATATTAATCGAACAAGTTTGAAACG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCTAGAGTGTCTCGCTGTCTCTTCAAATCCTTGTATAGACGAGCTAGAAACCATAGAGAAGGCAGGAAACTGAAAATAACCAAAACTAAACTTCAAACTTTTCGAAAATGCAAAAATTACAGTGAAGACGAAATTGCGCTCTATTGGACATGTTAACTTTGCCCGACTATATCTTGGTTACTGTAAAAGATATCAAAAAGTGCTCAACTAGCAAAATGTTTATCATGATATCAACAGCATTTTATAAGTTTAGAAATTTTCGATATCTCTTACAGTAACTGAGATATAAATAGTCGAAGATAGGATATCCAATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTTTTGTTTAGTATTGGCGCAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCGAGCATTGGAGCCTGTAATAGAATGATAGCTTTAATCAAATTTATTTCGATTACTGTAACAGCTAGCTAATAATGTTTAACTAACAAAATATTTGTTATATTATGGTTAACATTTTATCAATTGACCACTTTTTGATATTTATTATAGGAGCCGAGATAATGGACGTCACCTAGCAAGTCAAGTGATGGCGCCAAGCGCGTAGCTCAGCAGCGCCCAGTTTCAGCTTTACTATCTCGGTAACTAATAAAATGTTGCTAATCCTATGATAAATAATTTGTCAGTTGACTACTTTTTGATATCTTTCTCAGGAAATGAGATATAATAAATCTAGTCAAAGTTGAGAACTACGGTATCTATTCTTCTTCCTCGAATAACAAATTTTCCTGTCCTTGAACTTTTTCTTCTTATTATTATTATTCATTTTCTCTT</canonical>
            <polymorphic>AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCTAGAGTGTCTCGCTGTCTCTTCAAATCCTTGTATAGACGAGCTAGAAACCATAGAGAAGGCAGGAAACTGAAAATAACCAAAACTAAACTTCAAACTTTTCGAAAATGCAAAAATTACAGTGAAGACGAAATTGCGCTCTATTGGACATGTTAACTTTGCCCGACTATATCTTGGTTACTGTAAAAGATATCAAAAAGTGCTCAACTAGCAAAATGTTTATCATGATATCAACAGCATTTTATAAGTTTAGAAATTTTCGATATCTCTTACAGTAACTGAGATATAAATAGTCGAAGATAGGATATCCAATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTYTTGTTTAGTATTGGCGCAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCGAGCATTGGAGCCTGTAATAGAATGATAGCTTTAATCAAATTTATTTCGATTACTGTAACAGCTAGCTAATAATGTTTAACTAACAAAATATTTGTTATATTATGGTTAACATTTTATCAATTGACCACTTTTTGATATTTATTATAGGAGCCGAGATAATGGACGTCACCTAGCAAGTCAAGTGATGGCGCCAAGCGCGTAGCTCAGCAGCGCCCAGTTTCAGCTTTACTATCTCGGTAACTAATAAAATGTTGCTAATCCTATGATAAATAATTTGTCAGTTGACTACTTTTTGATATCTTTCTCAGGAAATGAGATATAATAAATCTAGTCAAAGTTGAGAACTACGGTATCTATTCTTCTTCCTCGAATAACAAATTTTCCTGTCCTTGAACTTTTTCTTCTTATTATTATTATTCATTTTCTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATCCAATAGAGCGCACTTC</pcr_primer_p1>
		<pcr_primer_p2>CGCTACATCGTCCTACAAAT</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>ATATCCAATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTTTTGTTTAGTATTGGCGCAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCG</canonical_amplicon>
		<polymorphic_amplicon>ATATCCAATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTYTTGTTTAGTATTGGCGCAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25557</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>87217</contig_pos>
        <strand>+</strand>
        <context>gtttagtatt[G/T]kckcaaawtt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTTTTGTTTAGTATT</left_flank>
        <right_flank>GCGCAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAGAGAGAGAGAGAGAGAGAGAAGCTAGAGTGTCTCGCTGTCTCTTCAAATCCTTGTATAGACGAGCTAGAAACCATAGAGAAGGCAGGAAACTGAAAATAACCAAAACTAAACTTCAAACTTTTCGAAAATGCAAAAATTACAGTGAAGACGAAATTGCGCTCTATTGGACATGTTAACTTTGCCCGACTATATCTTGGTTACTGTAAAAGATATCAAAAAGTGCTCAACTAGCAAAATGTTTATCATGATATCAACAGCATTTTATAAGTTTAGAAATTTTCGATATCTCTTACAGTAACTGAGATATAAATAGTCGAAGATAGGATATCCAATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTTTTGTTTAGTATTGGCGCAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCGAGCATTGGAGCCTGTAATAGAATGATAGCTTTAATCAAATTTATTTCGATTACTGTAACAGCTAGCTAATAATGTTTAACTAACAAAATATTTGTTATATTATGGTTAACATTTTATCAATTGACCACTTTTTGATATTTATTATAGGAGCCGAGATAATGGACGTCACCTAGCAAGTCAAGTGATGGCGCCAAGCGCGTAGCTCAGCAGCGCCCAGTTTCAGCTTTACTATCTCGGTAACTAATAAAATGTTGCTAATCCTATGATAAATAATTTGTCAGTTGACTACTTTTTGATATCTTTCTCAGGAAATGAGATATAATAAATCTAGTCAAAGTTGAGAACTACGGTATCTATTCTTCTTCCTCGAATAACAAATTTTCCTGTCCTTGAACTTTTTCTTCTTATTATTATTATTCATTTTCTCTTCTTTTCCTTATCA</canonical>
            <polymorphic>GAGAGAGAGAGAGAGAGAGAGAGAAGCTAGAGTGTCTCGCTGTCTCTTCAAATCCTTGTATAGACGAGCTAGAAACCATAGAGAAGGCAGGAAACTGAAAATAACCAAAACTAAACTTCAAACTTTTCGAAAATGCAAAAATTACAGTGAAGACGAAATTGCGCTCTATTGGACATGTTAACTTTGCCCGACTATATCTTGGTTACTGTAAAAGATATCAAAAAGTGCTCAACTAGCAAAATGTTTATCATGATATCAACAGCATTTTATAAGTTTAGAAATTTTCGATATCTCTTACAGTAACTGAGATATAAATAGTCGAAGATAGGATATCCAATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTTTTGTTTAGTATTKGCGCAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCGAGCATTGGAGCCTGTAATAGAATGATAGCTTTAATCAAATTTATTTCGATTACTGTAACAGCTAGCTAATAATGTTTAACTAACAAAATATTTGTTATATTATGGTTAACATTTTATCAATTGACCACTTTTTGATATTTATTATAGGAGCCGAGATAATGGACGTCACCTAGCAAGTCAAGTGATGGCGCCAAGCGCGTAGCTCAGCAGCGCCCAGTTTCAGCTTTACTATCTCGGTAACTAATAAAATGTTGCTAATCCTATGATAAATAATTTGTCAGTTGACTACTTTTTGATATCTTTCTCAGGAAATGAGATATAATAAATCTAGTCAAAGTTGAGAACTACGGTATCTATTCTTCTTCCTCGAATAACAAATTTTCCTGTCCTTGAACTTTTTCTTCTTATTATTATTATTCATTTTCTCTTCTTTTCCTTATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATCCAATAGAGCGCACTTC</pcr_primer_p1>
		<pcr_primer_p2>CGCTACATCGTCCTACAAAT</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>ATATCCAATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTTTTGTTTAGTATTGGCGCAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCG</canonical_amplicon>
		<polymorphic_amplicon>ATATCCAATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTTTTGTTTAGTATTKGCGCAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25558</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>87218</contig_pos>
        <strand>+</strand>
        <context>tttagtattk[G/T]ckcaaawttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTTTTGTTTAGTATTG</left_flank>
        <right_flank>CGCAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGAGAGAGAGAGAGAGAGAGAAGCTAGAGTGTCTCGCTGTCTCTTCAAATCCTTGTATAGACGAGCTAGAAACCATAGAGAAGGCAGGAAACTGAAAATAACCAAAACTAAACTTCAAACTTTTCGAAAATGCAAAAATTACAGTGAAGACGAAATTGCGCTCTATTGGACATGTTAACTTTGCCCGACTATATCTTGGTTACTGTAAAAGATATCAAAAAGTGCTCAACTAGCAAAATGTTTATCATGATATCAACAGCATTTTATAAGTTTAGAAATTTTCGATATCTCTTACAGTAACTGAGATATAAATAGTCGAAGATAGGATATCCAATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTTTTGTTTAGTATTGGCGCAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCGAGCATTGGAGCCTGTAATAGAATGATAGCTTTAATCAAATTTATTTCGATTACTGTAACAGCTAGCTAATAATGTTTAACTAACAAAATATTTGTTATATTATGGTTAACATTTTATCAATTGACCACTTTTTGATATTTATTATAGGAGCCGAGATAATGGACGTCACCTAGCAAGTCAAGTGATGGCGCCAAGCGCGTAGCTCAGCAGCGCCCAGTTTCAGCTTTACTATCTCGGTAACTAATAAAATGTTGCTAATCCTATGATAAATAATTTGTCAGTTGACTACTTTTTGATATCTTTCTCAGGAAATGAGATATAATAAATCTAGTCAAAGTTGAGAACTACGGTATCTATTCTTCTTCCTCGAATAACAAATTTTCCTGTCCTTGAACTTTTTCTTCTTATTATTATTATTCATTTTCTCTTCTTTTCCTTATCAT</canonical>
            <polymorphic>AGAGAGAGAGAGAGAGAGAGAGAAGCTAGAGTGTCTCGCTGTCTCTTCAAATCCTTGTATAGACGAGCTAGAAACCATAGAGAAGGCAGGAAACTGAAAATAACCAAAACTAAACTTCAAACTTTTCGAAAATGCAAAAATTACAGTGAAGACGAAATTGCGCTCTATTGGACATGTTAACTTTGCCCGACTATATCTTGGTTACTGTAAAAGATATCAAAAAGTGCTCAACTAGCAAAATGTTTATCATGATATCAACAGCATTTTATAAGTTTAGAAATTTTCGATATCTCTTACAGTAACTGAGATATAAATAGTCGAAGATAGGATATCCAATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTTTTGTTTAGTATTGKCGCAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCGAGCATTGGAGCCTGTAATAGAATGATAGCTTTAATCAAATTTATTTCGATTACTGTAACAGCTAGCTAATAATGTTTAACTAACAAAATATTTGTTATATTATGGTTAACATTTTATCAATTGACCACTTTTTGATATTTATTATAGGAGCCGAGATAATGGACGTCACCTAGCAAGTCAAGTGATGGCGCCAAGCGCGTAGCTCAGCAGCGCCCAGTTTCAGCTTTACTATCTCGGTAACTAATAAAATGTTGCTAATCCTATGATAAATAATTTGTCAGTTGACTACTTTTTGATATCTTTCTCAGGAAATGAGATATAATAAATCTAGTCAAAGTTGAGAACTACGGTATCTATTCTTCTTCCTCGAATAACAAATTTTCCTGTCCTTGAACTTTTTCTTCTTATTATTATTATTCATTTTCTCTTCTTTTCCTTATCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>245 231 181 162 159 15 7</canonical_bands>
                <polymorphic_bands>404 231 181 162 15 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATCCAATAGAGCGCACTTC</pcr_primer_p1>
		<pcr_primer_p2>CGCTACATCGTCCTACAAAT</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>ATATCCAATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTTTTGTTTAGTATTGGCGCAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCG</canonical_amplicon>
		<polymorphic_amplicon>ATATCCAATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTTTTGTTTAGTATTGKCGCAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25559</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>87220</contig_pos>
        <strand>+</strand>
        <context>tagtattkkc[G/T]caaawtttca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTTTTGTTTAGTATTGGC</left_flank>
        <right_flank>CAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGAGAGAGAGAGAGAGAGAAGCTAGAGTGTCTCGCTGTCTCTTCAAATCCTTGTATAGACGAGCTAGAAACCATAGAGAAGGCAGGAAACTGAAAATAACCAAAACTAAACTTCAAACTTTTCGAAAATGCAAAAATTACAGTGAAGACGAAATTGCGCTCTATTGGACATGTTAACTTTGCCCGACTATATCTTGGTTACTGTAAAAGATATCAAAAAGTGCTCAACTAGCAAAATGTTTATCATGATATCAACAGCATTTTATAAGTTTAGAAATTTTCGATATCTCTTACAGTAACTGAGATATAAATAGTCGAAGATAGGATATCCAATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTTTTGTTTAGTATTGGCGCAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCGAGCATTGGAGCCTGTAATAGAATGATAGCTTTAATCAAATTTATTTCGATTACTGTAACAGCTAGCTAATAATGTTTAACTAACAAAATATTTGTTATATTATGGTTAACATTTTATCAATTGACCACTTTTTGATATTTATTATAGGAGCCGAGATAATGGACGTCACCTAGCAAGTCAAGTGATGGCGCCAAGCGCGTAGCTCAGCAGCGCCCAGTTTCAGCTTTACTATCTCGGTAACTAATAAAATGTTGCTAATCCTATGATAAATAATTTGTCAGTTGACTACTTTTTGATATCTTTCTCAGGAAATGAGATATAATAAATCTAGTCAAAGTTGAGAACTACGGTATCTATTCTTCTTCCTCGAATAACAAATTTTCCTGTCCTTGAACTTTTTCTTCTTATTATTATTATTCATTTTCTCTTCTTTTCCTTATCATTG</canonical>
            <polymorphic>AGAGAGAGAGAGAGAGAGAGAAGCTAGAGTGTCTCGCTGTCTCTTCAAATCCTTGTATAGACGAGCTAGAAACCATAGAGAAGGCAGGAAACTGAAAATAACCAAAACTAAACTTCAAACTTTTCGAAAATGCAAAAATTACAGTGAAGACGAAATTGCGCTCTATTGGACATGTTAACTTTGCCCGACTATATCTTGGTTACTGTAAAAGATATCAAAAAGTGCTCAACTAGCAAAATGTTTATCATGATATCAACAGCATTTTATAAGTTTAGAAATTTTCGATATCTCTTACAGTAACTGAGATATAAATAGTCGAAGATAGGATATCCAATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTTTTGTTTAGTATTGGCKCAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCGAGCATTGGAGCCTGTAATAGAATGATAGCTTTAATCAAATTTATTTCGATTACTGTAACAGCTAGCTAATAATGTTTAACTAACAAAATATTTGTTATATTATGGTTAACATTTTATCAATTGACCACTTTTTGATATTTATTATAGGAGCCGAGATAATGGACGTCACCTAGCAAGTCAAGTGATGGCGCCAAGCGCGTAGCTCAGCAGCGCCCAGTTTCAGCTTTACTATCTCGGTAACTAATAAAATGTTGCTAATCCTATGATAAATAATTTGTCAGTTGACTACTTTTTGATATCTTTCTCAGGAAATGAGATATAATAAATCTAGTCAAAGTTGAGAACTACGGTATCTATTCTTCTTCCTCGAATAACAAATTTTCCTGTCCTTGAACTTTTTCTTCTTATTATTATTATTCATTTTCTCTTCTTTTCCTTATCATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>245 233 181 160 159 15 7</canonical_bands>
                <polymorphic_bands>404 233 181 160 15 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATCCAATAGAGCGCACTTC</pcr_primer_p1>
		<pcr_primer_p2>CGCTACATCGTCCTACAAAT</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>ATATCCAATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTTTTGTTTAGTATTGGCGCAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCG</canonical_amplicon>
		<polymorphic_amplicon>ATATCCAATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTTTTGTTTAGTATTGGCKCAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25560</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>87225</contig_pos>
        <strand>+</strand>
        <context>ttkkckcaaa[A/T]tttcatatwa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTGTCAACTACAAAAGTGAAGTTCTAGTTTTGTTTAGTATTGGCGCAAA</left_flank>
        <right_flank>TTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAGAGAGAGAGAGAAGCTAGAGTGTCTCGCTGTCTCTTCAAATCCTTGTATAGACGAGCTAGAAACCATAGAGAAGGCAGGAAACTGAAAATAACCAAAACTAAACTTCAAACTTTTCGAAAATGCAAAAATTACAGTGAAGACGAAATTGCGCTCTATTGGACATGTTAACTTTGCCCGACTATATCTTGGTTACTGTAAAAGATATCAAAAAGTGCTCAACTAGCAAAATGTTTATCATGATATCAACAGCATTTTATAAGTTTAGAAATTTTCGATATCTCTTACAGTAACTGAGATATAAATAGTCGAAGATAGGATATCCAATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTTTTGTTTAGTATTGGCGCAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCGAGCATTGGAGCCTGTAATAGAATGATAGCTTTAATCAAATTTATTTCGATTACTGTAACAGCTAGCTAATAATGTTTAACTAACAAAATATTTGTTATATTATGGTTAACATTTTATCAATTGACCACTTTTTGATATTTATTATAGGAGCCGAGATAATGGACGTCACCTAGCAAGTCAAGTGATGGCGCCAAGCGCGTAGCTCAGCAGCGCCCAGTTTCAGCTTTACTATCTCGGTAACTAATAAAATGTTGCTAATCCTATGATAAATAATTTGTCAGTTGACTACTTTTTGATATCTTTCTCAGGAAATGAGATATAATAAATCTAGTCAAAGTTGAGAACTACGGTATCTATTCTTCTTCCTCGAATAACAAATTTTCCTGTCCTTGAACTTTTTCTTCTTATTATTATTATTCATTTTCTCTTCTTTTCCTTATCATTGTTTTC</canonical>
            <polymorphic>GAGAGAGAGAGAGAGAAGCTAGAGTGTCTCGCTGTCTCTTCAAATCCTTGTATAGACGAGCTAGAAACCATAGAGAAGGCAGGAAACTGAAAATAACCAAAACTAAACTTCAAACTTTTCGAAAATGCAAAAATTACAGTGAAGACGAAATTGCGCTCTATTGGACATGTTAACTTTGCCCGACTATATCTTGGTTACTGTAAAAGATATCAAAAAGTGCTCAACTAGCAAAATGTTTATCATGATATCAACAGCATTTTATAAGTTTAGAAATTTTCGATATCTCTTACAGTAACTGAGATATAAATAGTCGAAGATAGGATATCCAATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTTTTGTTTAGTATTGGCGCAAAWTTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCGAGCATTGGAGCCTGTAATAGAATGATAGCTTTAATCAAATTTATTTCGATTACTGTAACAGCTAGCTAATAATGTTTAACTAACAAAATATTTGTTATATTATGGTTAACATTTTATCAATTGACCACTTTTTGATATTTATTATAGGAGCCGAGATAATGGACGTCACCTAGCAAGTCAAGTGATGGCGCCAAGCGCGTAGCTCAGCAGCGCCCAGTTTCAGCTTTACTATCTCGGTAACTAATAAAATGTTGCTAATCCTATGATAAATAATTTGTCAGTTGACTACTTTTTGATATCTTTCTCAGGAAATGAGATATAATAAATCTAGTCAAAGTTGAGAACTACGGTATCTATTCTTCTTCCTCGAATAACAAATTTTCCTGTCCTTGAACTTTTTCTTCTTATTATTATTATTCATTTTCTCTTCTTTTCCTTATCATTGTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>339 271 227 89 74</canonical_bands>
                <polymorphic_bands>339 316 271 74</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>227 153 131 123 105 89 81 74 17</canonical_bands>
                <polymorphic_bands>316 153 131 123 105 81 74 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCCAATAGAGCGCACTTC</pcr_primer_p1>
		<pcr_primer_p2>TCACTTGACTTGCTAGGTGAC</pcr_primer_p2>
		<pcr_amplicon_size>413</pcr_amplicon_size>
		<canonical_amplicon>TATCCAATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTTTTGTTTAGTATTGGCGCAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCGAGCATTGGAGCCTGTAATAGAATGATAGCTTTAATCAAATTTATTTCGATTACTGTAACAGCTAGCTAATAATGTTTAACTAACAAAATATTTGTTATATTATGGTTAACATTTTATCAATTGACCACTTTTTGATATTTATTATAGGAGCCGAGATAATGGACGTCACCTAGCAAGTCAAGTGA</canonical_amplicon>
		<polymorphic_amplicon>TATCCAATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTTTTGTTTAGTATTGGCGCAAAWTTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCGAGCATTGGAGCCTGTAATAGAATGATAGCTTTAATCAAATTTATTTCGATTACTGTAACAGCTAGCTAATAATGTTTAACTAACAAAATATTTGTTATATTATGGTTAACATTTTATCAATTGACCACTTTTTGATATTTATTATAGGAGCCGAGATAATGGACGTCACCTAGCAAGTCAAGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25561</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>87234</contig_pos>
        <strand></strand>
        <context>awtttcatat[T/A]aatcgaacaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TACAAAAGTGAAGTTCTAGTTTTGTTTAGTATTGGCGCAAAATTTCATAT</left_flank>
        <right_flank>AATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCGAGCATTGGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGAGAAGCTAGAGTGTCTCGCTGTCTCTTCAAATCCTTGTATAGACGAGCTAGAAACCATAGAGAAGGCAGGAAACTGAAAATAACCAAAACTAAACTTCAAACTTTTCGAAAATGCAAAAATTACAGTGAAGACGAAATTGCGCTCTATTGGACATGTTAACTTTGCCCGACTATATCTTGGTTACTGTAAAAGATATCAAAAAGTGCTCAACTAGCAAAATGTTTATCATGATATCAACAGCATTTTATAAGTTTAGAAATTTTCGATATCTCTTACAGTAACTGAGATATAAATAGTCGAAGATAGGATATCCAATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTTTTGTTTAGTATTGGCGCAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCGAGCATTGGAGCCTGTAATAGAATGATAGCTTTAATCAAATTTATTTCGATTACTGTAACAGCTAGCTAATAATGTTTAACTAACAAAATATTTGTTATATTATGGTTAACATTTTATCAATTGACCACTTTTTGATATTTATTATAGGAGCCGAGATAATGGACGTCACCTAGCAAGTCAAGTGATGGCGCCAAGCGCGTAGCTCAGCAGCGCCCAGTTTCAGCTTTACTATCTCGGTAACTAATAAAATGTTGCTAATCCTATGATAAATAATTTGTCAGTTGACTACTTTTTGATATCTTTCTCAGGAAATGAGATATAATAAATCTAGTCAAAGTTGAGAACTACGGTATCTATTCTTCTTCCTCGAATAACAAATTTTCCTGTCCTTGAACTTTTTCTTCTTATTATTATTATTCATTTTCTCTTCTTTTCCTTATCATTGTTTTCACCTCCATA</canonical>
            <polymorphic>AGAGAGAAGCTAGAGTGTCTCGCTGTCTCTTCAAATCCTTGTATAGACGAGCTAGAAACCATAGAGAAGGCAGGAAACTGAAAATAACCAAAACTAAACTTCAAACTTTTCGAAAATGCAAAAATTACAGTGAAGACGAAATTGCGCTCTATTGGACATGTTAACTTTGCCCGACTATATCTTGGTTACTGTAAAAGATATCAAAAAGTGCTCAACTAGCAAAATGTTTATCATGATATCAACAGCATTTTATAAGTTTAGAAATTTTCGATATCTCTTACAGTAACTGAGATATAAATAGTCGAAGATAGGATATCCAATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTTTTGTTTAGTATTGGCGCAAAATTTCATATWAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCGAGCATTGGAGCCTGTAATAGAATGATAGCTTTAATCAAATTTATTTCGATTACTGTAACAGCTAGCTAATAATGTTTAACTAACAAAATATTTGTTATATTATGGTTAACATTTTATCAATTGACCACTTTTTGATATTTATTATAGGAGCCGAGATAATGGACGTCACCTAGCAAGTCAAGTGATGGCGCCAAGCGCGTAGCTCAGCAGCGCCCAGTTTCAGCTTTACTATCTCGGTAACTAATAAAATGTTGCTAATCCTATGATAAATAATTTGTCAGTTGACTACTTTTTGATATCTTTCTCAGGAAATGAGATATAATAAATCTAGTCAAAGTTGAGAACTACGGTATCTATTCTTCTTCCTCGAATAACAAATTTTCCTGTCCTTGAACTTTTTCTTCTTATTATTATTATTCATTTTCTCTTCTTTTCCTTATCATTGTTTTCACCTCCATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>353 338 161 73 45 30</canonical_bands>
                <polymorphic_bands>411 353 161 45 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCCAATAGAGCGCACTTC</pcr_primer_p1>
		<pcr_primer_p2>TCACTTGACTTGCTAGGTGAC</pcr_primer_p2>
		<pcr_amplicon_size>413</pcr_amplicon_size>
		<canonical_amplicon>TATCCAATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTTTTGTTTAGTATTGGCGCAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCGAGCATTGGAGCCTGTAATAGAATGATAGCTTTAATCAAATTTATTTCGATTACTGTAACAGCTAGCTAATAATGTTTAACTAACAAAATATTTGTTATATTATGGTTAACATTTTATCAATTGACCACTTTTTGATATTTATTATAGGAGCCGAGATAATGGACGTCACCTAGCAAGTCAAGTGA</canonical_amplicon>
		<polymorphic_amplicon>TATCCAATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTTTTGTTTAGTATTGGCGCAAAATTTCATATWAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCGAGCATTGGAGCCTGTAATAGAATGATAGCTTTAATCAAATTTATTTCGATTACTGTAACAGCTAGCTAATAATGTTTAACTAACAAAATATTTGTTATATTATGGTTAACATTTTATCAATTGACCACTTTTTGATATTTATTATAGGAGCCGAGATAATGGACGTCACCTAGCAAGTCAAGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25562</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>87552</contig_pos>
        <strand></strand>
        <context>taaataattt[G/A]tcagttgact</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TACTATCTCGGTAACTAATAAAATGTTGCTAATCCTATGATAAATAATTT</left_flank>
        <right_flank>TCAGTTGACTACTTTTTGATATCTTTCTCAGGAAATGAGATATAATAAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTTTTGTTTAGTATTGGCGCAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCGAGCATTGGAGCCTGTAATAGAATGATAGCTTTAATCAAATTTATTTCGATTACTGTAACAGCTAGCTAATAATGTTTAACTAACAAAATATTTGTTATATTATGGTTAACATTTTATCAATTGACCACTTTTTGATATTTATTATAGGAGCCGAGATAATGGACGTCACCTAGCAAGTCAAGTGATGGCGCCAAGCGCGTAGCTCAGCAGCGCCCAGTTTCAGCTTTACTATCTCGGTAACTAATAAAATGTTGCTAATCCTATGATAAATAATTTGTCAGTTGACTACTTTTTGATATCTTTCTCAGGAAATGAGATATAATAAATCTAGTCAAAGTTGAGAACTACGGTATCTATTCTTCTTCCTCGAATAACAAATTTTCCTGTCCTTGAACTTTTTCTTCTTATTATTATTATTCATTTTCTCTTCTTTTCCTTATCATTGTTTTCACCTCCATAACTTTCTTCGGGAAAGTTCTCCGATTTTCGGTTTCCGATTAAGCCACGTCATCTGTGATCCCAAAGATTGTCTCTTCCGAATTTTTCTCCGTTTTCCTTCTTCTTCTTCTTCTTTTTCTCTTTCTCCAAAACATTACTTTCGATTTGTGTATTATACGATATCCACAAGGCCATCCGACAAATTTTTGGTGGTTCTTCTCGAGAGAAAAACAGCAAAGGATTGATGTATGGAGATGGTAGTAACGTCATCTGGAGGTTCAGATTGTTAGAAATTTAAGAATTTGGAATTTTCAGAACTTGGAGTACCGAATATTAAAA</canonical>
            <polymorphic>AATAGAGCGCACTTCCACAGGGCGTCAGCCGCCACCGAGCCGCCCTCTAGCCACCTAGCTAGCCACCACCTAGCAGCGTCCTCCACGTGGCATATCTCATGAGGGCACATTTGCAGCAAAAAGTTGTCAACTACAAAAGTGAAGTTCTAGTTTTGTTTAGTATTGGCGCAAAATTTCATATTAATCGAACAAGTTTGAAACGCATTTGTAGGACGATGTAGCGAGCATTGGAGCCTGTAATAGAATGATAGCTTTAATCAAATTTATTTCGATTACTGTAACAGCTAGCTAATAATGTTTAACTAACAAAATATTTGTTATATTATGGTTAACATTTTATCAATTGACCACTTTTTGATATTTATTATAGGAGCCGAGATAATGGACGTCACCTAGCAAGTCAAGTGATGGCGCCAAGCGCGTAGCTCAGCAGCGCCCAGTTTCAGCTTTACTATCTCGGTAACTAATAAAATGTTGCTAATCCTATGATAAATAATTTRTCAGTTGACTACTTTTTGATATCTTTCTCAGGAAATGAGATATAATAAATCTAGTCAAAGTTGAGAACTACGGTATCTATTCTTCTTCCTCGAATAACAAATTTTCCTGTCCTTGAACTTTTTCTTCTTATTATTATTATTCATTTTCTCTTCTTTTCCTTATCATTGTTTTCACCTCCATAACTTTCTTCGGGAAAGTTCTCCGATTTTCGGTTTCCGATTAAGCCACGTCATCTGTGATCCCAAAGATTGTCTCTTCCGAATTTTTCTCCGTTTTCCTTCTTCTTCTTCTTCTTTTTCTCTTTCTCCAAAACATTACTTTCGATTTGTGTATTATACGATATCCACAAGGCCATCCGACAAATTTTTGGTGGTTCTTCTCGAGAGAAAAACAGCAAAGGATTGATGTATGGAGATGGTAGTAACGTCATCTGGAGGTTCAGATTGTTAGAAATTTAAGAATTTGGAATTTTCAGAACTTGGAGTACCGAATATTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCAGTTTCAGCTTTACTATCT</pcr_primer_p1>
		<pcr_primer_p2>TTATGGAGGTGAAAACAATGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCCAGTTTCAGCTTTACTATCTCGGTAACTAATAAAATGTTGCTAATCCTATGATAAATAATTTGTCAGTTGACTACTTTTTGATATCTTTCTCAGGAAATGAGATATAATAAATCTAGTCAAAGTTGAGAACTACGGTATCTATTCTTCTTCCTCGAATAACAAATTTTCCTGTCCTTGAACTTTTTCTTCTTATTATTATTATTCATTTTCTCTTCTTTTCCTTATCATTGTTTTCACCTCCATAA</canonical_amplicon>
		<polymorphic_amplicon>CCCAGTTTCAGCTTTACTATCTCGGTAACTAATAAAATGTTGCTAATCCTATGATAAATAATTTRTCAGTTGACTACTTTTTGATATCTTTCTCAGGAAATGAGATATAATAAATCTAGTCAAAGTTGAGAACTACGGTATCTATTCTTCTTCCTCGAATAACAAATTTTCCTGTCCTTGAACTTTTTCTTCTTATTATTATTATTCATTTTCTCTTCTTTTCCTTATCATTGTTTTCACCTCCATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25563</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>91829</contig_pos>
        <strand></strand>
        <context>attttctgta[T/A]aagatatcaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTA</left_flank>
        <right_flank>AAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCTTGGTTCCTAGAACATATATCACAAAGTTGTAACTAATAATATGTTTATCATAATAAGATTGATGTTTTGTCAGTTGGTTACTTTTTGATACCTTTTCTAGGAAGCGAGATAATTTGGCTGTCAAATTTAACATTCTATTACAGATTTCAAAGTCCACGGCTCGTTTCAGCAACCTTCAAATAGAATTTCCTTTCAAGCTTGCCGCGATGTCTCCAAAATATTTCGACTATACTAAACACAACTAAAGCTCATTTTTGTAGTTGACAACTTTTTCCTGCAAACGCGCTCTTTGGAACTTTGGAATTTGGAATTCTTGACATTCTCGGATACTTTCTTTCTTGGATAATTTCACCAGAATCATTCAAAACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCT</canonical>
            <polymorphic>TATCTTGGTTCCTAGAACATATATCACAAAGTTGTAACTAATAATATGTTTATCATAATAAGATTGATGTTTTGTCAGTTGGTTACTTTTTGATACCTTTTCTAGGAAGCGAGATAATTTGGCTGTCAAATTTAACATTCTATTACAGATTTCAAAGTCCACGGCTCGTTTCAGCAACCTTCAAATAGAATTTCCTTTCAAGCTTGCCGCGATGTCTCCAAAATATTTCGACTATACTAAACACAACTAAAGCTCATTTTTGTAGTTGACAACTTTTTCCTGCAAACGCGCTCTTTGGAACTTTGGAATTTGGAATTCTTGACATTCTCGGATACTTTCTTTCTTGGATAATTTCACCAGAATCATTCAAAACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTAWAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGCATTAGGGATTCTTTA</pcr_primer_p1>
		<pcr_primer_p2>AATATAAGCGCTTGTTGAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>511</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTAWAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25564</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>91894</contig_pos>
        <strand></strand>
        <context>tttatcagtt[G/A]acaacttttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTT</left_flank>
        <right_flank>ACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGTTTTGTCAGTTGGTTACTTTTTGATACCTTTTCTAGGAAGCGAGATAATTTGGCTGTCAAATTTAACATTCTATTACAGATTTCAAAGTCCACGGCTCGTTTCAGCAACCTTCAAATAGAATTTCCTTTCAAGCTTGCCGCGATGTCTCCAAAATATTTCGACTATACTAAACACAACTAAAGCTCATTTTTGTAGTTGACAACTTTTTCCTGCAAACGCGCTCTTTGGAACTTTGGAATTTGGAATTCTTGACATTCTCGGATACTTTCTTTCTTGGATAATTTCACCAGAATCATTCAAAACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAA</canonical>
            <polymorphic>GATGTTTTGTCAGTTGGTTACTTTTTGATACCTTTTCTAGGAAGCGAGATAATTTGGCTGTCAAATTTAACATTCTATTACAGATTTCAAAGTCCACGGCTCGTTTCAGCAACCTTCAAATAGAATTTCCTTTCAAGCTTGCCGCGATGTCTCCAAAATATTTCGACTATACTAAACACAACTAAAGCTCATTTTTGTAGTTGACAACTTTTTCCTGCAAACGCGCTCTTTGGAACTTTGGAATTTGGAATTCTTGACATTCTCGGATACTTTCTTTCTTGGATAATTTCACCAGAATCATTCAAAACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTRACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>252 202 182 180 139 45</canonical_bands>
                <polymorphic_bands>252 225 202 182 139</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGCATTAGGGATTCTTTATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATATAAGCGCTTGTTGAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>508</pcr_amplicon_size>
		<canonical_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</canonical_amplicon>
		<polymorphic_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTRACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25565</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>91949</contig_pos>
        <strand>+</strand>
        <context>aaagttacta[G/T]cccttctatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTA</left_flank>
        <right_flank>CCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCTGTCAAATTTAACATTCTATTACAGATTTCAAAGTCCACGGCTCGTTTCAGCAACCTTCAAATAGAATTTCCTTTCAAGCTTGCCGCGATGTCTCCAAAATATTTCGACTATACTAAACACAACTAAAGCTCATTTTTGTAGTTGACAACTTTTTCCTGCAAACGCGCTCTTTGGAACTTTGGAATTTGGAATTCTTGACATTCTCGGATACTTTCTTTCTTGGATAATTTCACCAGAATCATTCAAAACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAG</canonical>
            <polymorphic>GGCTGTCAAATTTAACATTCTATTACAGATTTCAAAGTCCACGGCTCGTTTCAGCAACCTTCAAATAGAATTTCCTTTCAAGCTTGCCGCGATGTCTCCAAAATATTTCGACTATACTAAACACAACTAAAGCTCATTTTTGTAGTTGACAACTTTTTCCTGCAAACGCGCTCTTTGGAACTTTGGAATTTGGAATTCTTGACATTCTCGGATACTTTCTTTCTTGGATAATTTCACCAGAATCATTCAAAACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAKCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>497 218 106 83 77 11 8</canonical_bands>
                <polymorphic_bands>603 218 83 77 11 8</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>368 190 154 137 50 42 38 19 2</canonical_bands>
                <polymorphic_bands>558 154 137 50 42 38 19 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGCATTAGGGATTCTTTATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATATAAGCGCTTGTTGAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>508</pcr_amplicon_size>
		<canonical_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</canonical_amplicon>
		<polymorphic_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAKCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25566</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>91979</contig_pos>
        <strand></strand>
        <context>aaggtTCAGT[G/T]CTGGTTGCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGT</left_flank>
        <right_flank>CTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAAAGTCCACGGCTCGTTTCAGCAACCTTCAAATAGAATTTCCTTTCAAGCTTGCCGCGATGTCTCCAAAATATTTCGACTATACTAAACACAACTAAAGCTCATTTTTGTAGTTGACAACTTTTTCCTGCAAACGCGCTCTTTGGAACTTTGGAATTTGGAATTCTTGACATTCTCGGATACTTTCTTTCTTGGATAATTTCACCAGAATCATTCAAAACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAGTACTCTCGTCAACTGGGTCAAGGCTTTTTT</canonical>
            <polymorphic>TTCAAAGTCCACGGCTCGTTTCAGCAACCTTCAAATAGAATTTCCTTTCAAGCTTGCCGCGATGTCTCCAAAATATTTCGACTATACTAAACACAACTAAAGCTCATTTTTGTAGTTGACAACTTTTTCCTGCAAACGCGCTCTTTGGAACTTTGGAATTTGGAATTCTTGACATTCTCGGATACTTTCTTTCTTGGATAATTTCACCAGAATCATTCAAAACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTKCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAGTACTCTCGTCAACTGGGTCAAGGCTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>196 140 113 104 82 73 70 64 56 31 21 11 11 9 8 7 4</canonical_bands>
                <polymorphic_bands>196 140 113 104 82 73 73 70 56 31 21 11 11 8 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGCATTAGGGATTCTTTATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATATAAGCGCTTGTTGAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>508</pcr_amplicon_size>
		<canonical_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</canonical_amplicon>
		<polymorphic_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTKCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25567</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>92001</contig_pos>
        <strand></strand>
        <context>ATCCTAATGT[C/G]TTtcaaactt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGT</left_flank>
        <right_flank>TTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCAACCTTCAAATAGAATTTCCTTTCAAGCTTGCCGCGATGTCTCCAAAATATTTCGACTATACTAAACACAACTAAAGCTCATTTTTGTAGTTGACAACTTTTTCCTGCAAACGCGCTCTTTGGAACTTTGGAATTTGGAATTCTTGACATTCTCGGATACTTTCTTTCTTGGATAATTTCACCAGAATCATTCAAAACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAGTACTCTCGTCAACTGGGTCAAGGCTTTTTTACTTTTTTTTCACTACTCATGT</canonical>
            <polymorphic>AGCAACCTTCAAATAGAATTTCCTTTCAAGCTTGCCGCGATGTCTCCAAAATATTTCGACTATACTAAACACAACTAAAGCTCATTTTTGTAGTTGACAACTTTTTCCTGCAAACGCGCTCTTTGGAACTTTGGAATTTGGAATTCTTGACATTCTCGGATACTTTCTTTCTTGGATAATTTCACCAGAATCATTCAAAACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTSTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAGTACTCTCGTCAACTGGGTCAAGGCTTTTTTACTTTTTTTTCACTACTCATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCATTAGGGATTCTTTATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATATAAGCGCTTGTTGAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>508</pcr_amplicon_size>
		<canonical_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</canonical_amplicon>
		<polymorphic_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTSTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25568</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>92030</contig_pos>
        <strand></strand>
        <context>tttttgaaat[G/T]ttcagagggt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAAT</left_flank>
        <right_flank>TTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTGCCGCGATGTCTCCAAAATATTTCGACTATACTAAACACAACTAAAGCTCATTTTTGTAGTTGACAACTTTTTCCTGCAAACGCGCTCTTTGGAACTTTGGAATTTGGAATTCTTGACATTCTCGGATACTTTCTTTCTTGGATAATTTCACCAGAATCATTCAAAACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAGTACTCTCGTCAACTGGGTCAAGGCTTTTTTACTTTTTTTTCACTACTCATGTGTTTTTTTTTCGAGAAATTTCGAAAGAAT</canonical>
            <polymorphic>GCTTGCCGCGATGTCTCCAAAATATTTCGACTATACTAAACACAACTAAAGCTCATTTTTGTAGTTGACAACTTTTTCCTGCAAACGCGCTCTTTGGAACTTTGGAATTTGGAATTCTTGACATTCTCGGATACTTTCTTTCTTGGATAATTTCACCAGAATCATTCAAAACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATKTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAGTACTCTCGTCAACTGGGTCAAGGCTTTTTTACTTTTTTTTCACTACTCATGTGTTTTTTTTTCGAGAAATTTCGAAAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCATTAGGGATTCTTTATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATATAAGCGCTTGTTGAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>508</pcr_amplicon_size>
		<canonical_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</canonical_amplicon>
		<polymorphic_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATKTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25569</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>92068</contig_pos>
        <strand></strand>
        <context>cttcattttt[G/T]tagttwacaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTT</left_flank>
        <right_flank>TAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACACAACTAAAGCTCATTTTTGTAGTTGACAACTTTTTCCTGCAAACGCGCTCTTTGGAACTTTGGAATTTGGAATTCTTGACATTCTCGGATACTTTCTTTCTTGGATAATTTCACCAGAATCATTCAAAACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAGTACTCTCGTCAACTGGGTCAAGGCTTTTTTACTTTTTTTTCACTACTCATGTGTTTTTTTTTCGAGAAATTTCGAAAGAATTGTGACCAGGGAGGTCGTATACAGGTAAATCTCAAGAT</canonical>
            <polymorphic>AACACAACTAAAGCTCATTTTTGTAGTTGACAACTTTTTCCTGCAAACGCGCTCTTTGGAACTTTGGAATTTGGAATTCTTGACATTCTCGGATACTTTCTTTCTTGGATAATTTCACCAGAATCATTCAAAACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTKTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAGTACTCTCGTCAACTGGGTCAAGGCTTTTTTACTTTTTTTTCACTACTCATGTGTTTTTTTTTCGAGAAATTTCGAAAGAATTGTGACCAGGGAGGTCGTATACAGGTAAATCTCAAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCATTAGGGATTCTTTATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATATAAGCGCTTGTTGAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>508</pcr_amplicon_size>
		<canonical_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</canonical_amplicon>
		<polymorphic_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTKTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25570</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>92074</contig_pos>
        <strand></strand>
        <context>ttttktagtt[A/T]acaacttttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTT</left_flank>
        <right_flank>ACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTAAAGCTCATTTTTGTAGTTGACAACTTTTTCCTGCAAACGCGCTCTTTGGAACTTTGGAATTTGGAATTCTTGACATTCTCGGATACTTTCTTTCTTGGATAATTTCACCAGAATCATTCAAAACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAGTACTCTCGTCAACTGGGTCAAGGCTTTTTTACTTTTTTTTCACTACTCATGTGTTTTTTTTTCGAGAAATTTCGAAAGAATTGTGACCAGGGAGGTCGTATACAGGTAAATCTCAAGATCACATG</canonical>
            <polymorphic>ACTAAAGCTCATTTTTGTAGTTGACAACTTTTTCCTGCAAACGCGCTCTTTGGAACTTTGGAATTTGGAATTCTTGACATTCTCGGATACTTTCTTTCTTGGATAATTTCACCAGAATCATTCAAAACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTWACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAGTACTCTCGTCAACTGGGTCAAGGCTTTTTTACTTTTTTTTCACTACTCATGTGTTTTTTTTTCGAGAAATTTCGAAAGAATTGTGACCAGGGAGGTCGTATACAGGTAAATCTCAAGATCACATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTTAAC</site>
                <isoschizomers>
                    <enzyme>BstHPI</enzyme>
                    <enzyme>HpaI</enzyme>
                    <enzyme>KspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>252 247 180 139 115 45 22</canonical_bands>
                <polymorphic_bands>319 252 247 115 45 22</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>342 271 183 160 44</canonical_bands>
                <polymorphic_bands>613 183 160 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGCATTAGGGATTCTTTATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATATAAGCGCTTGTTGAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>508</pcr_amplicon_size>
		<canonical_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</canonical_amplicon>
		<polymorphic_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTWACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25571</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>92126</contig_pos>
        <strand></strand>
        <context>ctggaagacg[G/C]tgctaggtgc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACG</left_flank>
        <right_flank>TGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACTTTGGAATTTGGAATTCTTGACATTCTCGGATACTTTCTTTCTTGGATAATTTCACCAGAATCATTCAAAACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAGTACTCTCGTCAACTGGGTCAAGGCTTTTTTACTTTTTTTTCACTACTCATGTGTTTTTTTTTCGAGAAATTTCGAAAGAATTGTGACCAGGGAGGTCGTATACAGGTAAATCTCAAGATCACATGACTAGATATATGGTATTGTGGTATAGAGATTTATTTTTGAGATTATATGGGG</canonical>
            <polymorphic>GAACTTTGGAATTTGGAATTCTTGACATTCTCGGATACTTTCTTTCTTGGATAATTTCACCAGAATCATTCAAAACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGSTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAGTACTCTCGTCAACTGGGTCAAGGCTTTTTTACTTTTTTTTCACTACTCATGTGTTTTTTTTTCGAGAAATTTCGAAAGAATTGTGACCAGGGAGGTCGTATACAGGTAAATCTCAAGATCACATGACTAGATATATGGTATTGTGGTATAGAGATTTATTTTTGAGATTATATGGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>196 140 116 73 70 64 59 56 36 32 32 31 24 21 11 11 9 8 7 4</canonical_bands>
                <polymorphic_bands>196 147 116 73 70 64 59 56 36 32 32 31 24 21 11 11 9 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGCATTAGGGATTCTTTATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATATAAGCGCTTGTTGAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>508</pcr_amplicon_size>
		<canonical_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</canonical_amplicon>
		<polymorphic_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGSTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25572</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>92183</contig_pos>
        <strand>+</strand>
        <context>ggcatatctc[A/T]tgagrgcama</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTC</left_flank>
        <right_flank>TGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACCAGAATCATTCAAAACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAGTACTCTCGTCAACTGGGTCAAGGCTTTTTTACTTTTTTTTCACTACTCATGTGTTTTTTTTTCGAGAAATTTCGAAAGAATTGTGACCAGGGAGGTCGTATACAGGTAAATCTCAAGATCACATGACTAGATATATGGTATTGTGGTATAGAGATTTATTTTTGAGATTATATGGGGATGACTTCCTACAGTATCCCTGGGAAACCAAAAAAAAGTTAGTAGAGGAGAGAATGG</canonical>
            <polymorphic>CACCAGAATCATTCAAAACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCWTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAGTACTCTCGTCAACTGGGTCAAGGCTTTTTTACTTTTTTTTCACTACTCATGTGTTTTTTTTTCGAGAAATTTCGAAAGAATTGTGACCAGGGAGGTCGTATACAGGTAAATCTCAAGATCACATGACTAGATATATGGTATTGTGGTATAGAGATTTATTTTTGAGATTATATGGGGATGACTTCCTACAGTATCCCTGGGAAACCAAAAAAAAGTTAGTAGAGGAGAGAATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>499 379 122</canonical_bands>
                <polymorphic_bands>878 122</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGCATTAGGGATTCTTTATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATATAAGCGCTTGTTGAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>508</pcr_amplicon_size>
		<canonical_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</canonical_amplicon>
		<polymorphic_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCWTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25573</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>92188</contig_pos>
        <strand>+</strand>
        <context>atctcwtgag[A/G]gcamawytky</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAG</left_flank>
        <right_flank>GCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATCATTCAAAACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAGTACTCTCGTCAACTGGGTCAAGGCTTTTTTACTTTTTTTTCACTACTCATGTGTTTTTTTTTCGAGAAATTTCGAAAGAATTGTGACCAGGGAGGTCGTATACAGGTAAATCTCAAGATCACATGACTAGATATATGGTATTGTGGTATAGAGATTTATTTTTGAGATTATATGGGGATGACTTCCTACAGTATCCCTGGGAAACCAAAAAAAAGTTAGTAGAGGAGAGAATGGGAAAT</canonical>
            <polymorphic>GAATCATTCAAAACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGRGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAGTACTCTCGTCAACTGGGTCAAGGCTTTTTTACTTTTTTTTCACTACTCATGTGTTTTTTTTTCGAGAAATTTCGAAAGAATTGTGACCAGGGAGGTCGTATACAGGTAAATCTCAAGATCACATGACTAGATATATGGTATTGTGGTATAGAGATTTATTTTTGAGATTATATGGGGATGACTTCCTACAGTATCCCTGGGAAACCAAAAAAAAGTTAGTAGAGGAGAGAATGGGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCATTAGGGATTCTTTATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATATAAGCGCTTGTTGAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>508</pcr_amplicon_size>
		<canonical_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</canonical_amplicon>
		<polymorphic_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGRGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25574</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>92192</contig_pos>
        <strand>+</strand>
        <context>cwtgagrgca[A/C]awytkyasma</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCA</left_flank>
        <right_flank>AACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTCAAAACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAGTACTCTCGTCAACTGGGTCAAGGCTTTTTTACTTTTTTTTCACTACTCATGTGTTTTTTTTTCGAGAAATTTCGAAAGAATTGTGACCAGGGAGGTCGTATACAGGTAAATCTCAAGATCACATGACTAGATATATGGTATTGTGGTATAGAGATTTATTTTTGAGATTATATGGGGATGACTTCCTACAGTATCCCTGGGAAACCAAAAAAAAGTTAGTAGAGGAGAGAATGGGAAATTTTG</canonical>
            <polymorphic>CATTCAAAACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAMAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAGTACTCTCGTCAACTGGGTCAAGGCTTTTTTACTTTTTTTTCACTACTCATGTGTTTTTTTTTCGAGAAATTTCGAAAGAATTGTGACCAGGGAGGTCGTATACAGGTAAATCTCAAGATCACATGACTAGATATATGGTATTGTGGTATAGAGATTTATTTTTGAGATTATATGGGGATGACTTCCTACAGTATCCCTGGGAAACCAAAAAAAAGTTAGTAGAGGAGAGAATGGGAAATTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCATTAGGGATTCTTTATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATATAAGCGCTTGTTGAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>508</pcr_amplicon_size>
		<canonical_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</canonical_amplicon>
		<polymorphic_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAMAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25575</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>92194</contig_pos>
        <strand>+</strand>
        <context>tgagrgcama[A/T]ytkyasmaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAA</left_flank>
        <right_flank>CTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAAAACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAGTACTCTCGTCAACTGGGTCAAGGCTTTTTTACTTTTTTTTCACTACTCATGTGTTTTTTTTTCGAGAAATTTCGAAAGAATTGTGACCAGGGAGGTCGTATACAGGTAAATCTCAAGATCACATGACTAGATATATGGTATTGTGGTATAGAGATTTATTTTTGAGATTATATGGGGATGACTTCCTACAGTATCCCTGGGAAACCAAAAAAAAGTTAGTAGAGGAGAGAATGGGAAATTTTGAG</canonical>
            <polymorphic>TTCAAAACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAWCTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAGTACTCTCGTCAACTGGGTCAAGGCTTTTTTACTTTTTTTTCACTACTCATGTGTTTTTTTTTCGAGAAATTTCGAAAGAATTGTGACCAGGGAGGTCGTATACAGGTAAATCTCAAGATCACATGACTAGATATATGGTATTGTGGTATAGAGATTTATTTTTGAGATTATATGGGGATGACTTCCTACAGTATCCCTGGGAAACCAAAAAAAAGTTAGTAGAGGAGAGAATGGGAAATTTTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCATTAGGGATTCTTTATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATATAAGCGCTTGTTGAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>508</pcr_amplicon_size>
		<canonical_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</canonical_amplicon>
		<polymorphic_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAWCTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25576</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>92195</contig_pos>
        <strand>+</strand>
        <context>gagrgcamaw[C/T]tkyasmaaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAA</left_flank>
        <right_flank>TTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAGTACTCTCGTCAACTGGGTCAAGGCTTTTTTACTTTTTTTTCACTACTCATGTGTTTTTTTTTCGAGAAATTTCGAAAGAATTGTGACCAGGGAGGTCGTATACAGGTAAATCTCAAGATCACATGACTAGATATATGGTATTGTGGTATAGAGATTTATTTTTGAGATTATATGGGGATGACTTCCTACAGTATCCCTGGGAAACCAAAAAAAAGTTAGTAGAGGAGAGAATGGGAAATTTTGAGA</canonical>
            <polymorphic>TCAAAACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAAYTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAGTACTCTCGTCAACTGGGTCAAGGCTTTTTTACTTTTTTTTCACTACTCATGTGTTTTTTTTTCGAGAAATTTCGAAAGAATTGTGACCAGGGAGGTCGTATACAGGTAAATCTCAAGATCACATGACTAGATATATGGTATTGTGGTATAGAGATTTATTTTTGAGATTATATGGGGATGACTTCCTACAGTATCCCTGGGAAACCAAAAAAAAGTTAGTAGAGGAGAGAATGGGAAATTTTGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCATTAGGGATTCTTTATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATATAAGCGCTTGTTGAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>508</pcr_amplicon_size>
		<canonical_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</canonical_amplicon>
		<polymorphic_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAAYTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25577</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>92197</contig_pos>
        <strand>+</strand>
        <context>grgcamawyt[G/T]yasmaaaaag</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACT</left_flank>
        <right_flank>TACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAGTACTCTCGTCAACTGGGTCAAGGCTTTTTTACTTTTTTTTCACTACTCATGTGTTTTTTTTTCGAGAAATTTCGAAAGAATTGTGACCAGGGAGGTCGTATACAGGTAAATCTCAAGATCACATGACTAGATATATGGTATTGTGGTATAGAGATTTATTTTTGAGATTATATGGGGATGACTTCCTACAGTATCCCTGGGAAACCAAAAAAAAGTTAGTAGAGGAGAGAATGGGAAATTTTGAGAGC</canonical>
            <polymorphic>AAAACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTKTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAGTACTCTCGTCAACTGGGTCAAGGCTTTTTTACTTTTTTTTCACTACTCATGTGTTTTTTTTTCGAGAAATTTCGAAAGAATTGTGACCAGGGAGGTCGTATACAGGTAAATCTCAAGATCACATGACTAGATATATGGTATTGTGGTATAGAGATTTATTTTTGAGATTATATGGGGATGACTTCCTACAGTATCCCTGGGAAACCAAAAAAAAGTTAGTAGAGGAGAGAATGGGAAATTTTGAGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCATTAGGGATTCTTTATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATATAAGCGCTTGTTGAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>508</pcr_amplicon_size>
		<canonical_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</canonical_amplicon>
		<polymorphic_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTKTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25578</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>92198</contig_pos>
        <strand>+</strand>
        <context>rgcamawytk[C/T]asmaaaaagt</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTT</left_flank>
        <right_flank>ACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAGTACTCTCGTCAACTGGGTCAAGGCTTTTTTACTTTTTTTTCACTACTCATGTGTTTTTTTTTCGAGAAATTTCGAAAGAATTGTGACCAGGGAGGTCGTATACAGGTAAATCTCAAGATCACATGACTAGATATATGGTATTGTGGTATAGAGATTTATTTTTGAGATTATATGGGGATGACTTCCTACAGTATCCCTGGGAAACCAAAAAAAAGTTAGTAGAGGAGAGAATGGGAAATTTTGAGAGCG</canonical>
            <polymorphic>AAACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTYACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAGTACTCTCGTCAACTGGGTCAAGGCTTTTTTACTTTTTTTTCACTACTCATGTGTTTTTTTTTCGAGAAATTTCGAAAGAATTGTGACCAGGGAGGTCGTATACAGGTAAATCTCAAGATCACATGACTAGATATATGGTATTGTGGTATAGAGATTTATTTTTGAGATTATATGGGGATGACTTCCTACAGTATCCCTGGGAAACCAAAAAAAAGTTAGTAGAGGAGAGAATGGGAAATTTTGAGAGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCATTAGGGATTCTTTATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATATAAGCGCTTGTTGAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>508</pcr_amplicon_size>
		<canonical_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</canonical_amplicon>
		<polymorphic_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTYACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25579</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>92200</contig_pos>
        <strand>+</strand>
        <context>camawytkya[C/G]maaaaagttg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTA</left_flank>
        <right_flank>AAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAGTACTCTCGTCAACTGGGTCAAGGCTTTTTTACTTTTTTTTCACTACTCATGTGTTTTTTTTTCGAGAAATTTCGAAAGAATTGTGACCAGGGAGGTCGTATACAGGTAAATCTCAAGATCACATGACTAGATATATGGTATTGTGGTATAGAGATTTATTTTTGAGATTATATGGGGATGACTTCCTACAGTATCCCTGGGAAACCAAAAAAAAGTTAGTAGAGGAGAGAATGGGAAATTTTGAGAGCGAT</canonical>
            <polymorphic>ACTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTASAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAGTACTCTCGTCAACTGGGTCAAGGCTTTTTTACTTTTTTTTCACTACTCATGTGTTTTTTTTTCGAGAAATTTCGAAAGAATTGTGACCAGGGAGGTCGTATACAGGTAAATCTCAAGATCACATGACTAGATATATGGTATTGTGGTATAGAGATTTATTTTTGAGATTATATGGGGATGACTTCCTACAGTATCCCTGGGAAACCAAAAAAAAGTTAGTAGAGGAGAGAATGGGAAATTTTGAGAGCGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCATTAGGGATTCTTTATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATATAAGCGCTTGTTGAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>508</pcr_amplicon_size>
		<canonical_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</canonical_amplicon>
		<polymorphic_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTASAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25580</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>92201</contig_pos>
        <strand>+</strand>
        <context>amawytkyas[A/C]aaaaagttgt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTAC</left_flank>
        <right_flank>AAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAGTACTCTCGTCAACTGGGTCAAGGCTTTTTTACTTTTTTTTCACTACTCATGTGTTTTTTTTTCGAGAAATTTCGAAAGAATTGTGACCAGGGAGGTCGTATACAGGTAAATCTCAAGATCACATGACTAGATATATGGTATTGTGGTATAGAGATTTATTTTTGAGATTATATGGGGATGACTTCCTACAGTATCCCTGGGAAACCAAAAAAAAGTTAGTAGAGGAGAGAATGGGAAATTTTGAGAGCGATT</canonical>
            <polymorphic>CTTTGATAATTATCCTTTTCTGAAATTTGGTAAATTTGTGAAATTCAGAATAATCTTAAATCGGAATTTTGGAACTTTCAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACMAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAGTACTCTCGTCAACTGGGTCAAGGCTTTTTTACTTTTTTTTCACTACTCATGTGTTTTTTTTTCGAGAAATTTCGAAAGAATTGTGACCAGGGAGGTCGTATACAGGTAAATCTCAAGATCACATGACTAGATATATGGTATTGTGGTATAGAGATTTATTTTTGAGATTATATGGGGATGACTTCCTACAGTATCCCTGGGAAACCAAAAAAAAGTTAGTAGAGGAGAGAATGGGAAATTTTGAGAGCGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCATTAGGGATTCTTTATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATATAAGCGCTTGTTGAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>508</pcr_amplicon_size>
		<canonical_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</canonical_amplicon>
		<polymorphic_amplicon>CAGCATTAGGGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACMAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25581</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>92288</contig_pos>
        <strand></strand>
        <context>CGCTTATATT[C/T]ATTTCATTGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATT</left_flank>
        <right_flank>ATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAGTACTCTCGTCAACTGGGTCAAGGCTTTTTTACTTTTTTTTCACTACTCATGTGTTTTTTTTTCGAGAAATTTCGAAAGAATTGTGACCAGGGAGGTCGTATACAGGTAAATCTCAAGATCACATGACTAGATATATGGTATTGTGGTATAGAGATTTATTTTTGAGATTATATGGGGATGACTTCCTACAGTATCCCTGGGAAACCAAAAAAAAGTTAGTAGAGGAGAGAATGGGAAATTTTGAGAGCGATTGTTCTGGAAATTTCTGAGGATATTAAACAAAACAAGAGCTTCATTTTTGTAGTTGACAACTTTTTTGTAAAATTTAAGCCTGAGGAG</canonical>
            <polymorphic>GGATTCTTTATTTTAAAGCAAATTCACCTCATTTTCTGTATAAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATGATATCAAAAATATTTTATCAGTTGACAACTTTTTGATATAATTCACAGGAACCGAGATAATTTGATTCAAAGTTACTAGCCCTTCTATTACAGGTTTCAAGGTTCAGTGCTGGTTGCACCATCCTAATGTCTTTCAAACTTTTCCGATTTTTTTGAAATGTTCAGAGGGTACTAAACAAACCTAGACCTTCATTTTTGTAGTTAACAACTTTTTGCTGCAAATGCGCCCTATTGAGATATGCTACCTGGAAGACGGTGCTAGGTGCCAGCTAGGTGCCTAGGTTACGGCTGATGCCACGTGGGGCATATCTCTTGAGAGCAAAACTTTACAAAAAAGTTGTCAACTACAAAAATGAAGGTCTAGTCTTGTTTAGTATTTTCTCAAATTTTCAGACTATTTCAACAAGCGCTTATATTYATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAATTCCTTATTTTGTTTTTTTTTAAATCCTCATCTAAATTCCATCCTAAATTCCAAGTACTCTCGTCAACTGGGTCAAGGCTTTTTTACTTTTTTTTCACTACTCATGTGTTTTTTTTTCGAGAAATTTCGAAAGAATTGTGACCAGGGAGGTCGTATACAGGTAAATCTCAAGATCACATGACTAGATATATGGTATTGTGGTATAGAGATTTATTTTTGAGATTATATGGGGATGACTTCCTACAGTATCCCTGGGAAACCAAAAAAAAGTTAGTAGAGGAGAGAATGGGAAATTTTGAGAGCGATTGTTCTGGAAATTTCTGAGGATATTAAACAAAACAAGAGCTTCATTTTTGTAGTTGACAACTTTTTTGTAAAATTTAAGCCTGAGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCATTAGGGATTCTTTATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGGAATTTTATAGTTTGTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>615</pcr_amplicon_size>
		<canonical_amplicon>TCATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAA</canonical_amplicon>
		<polymorphic_amplicon>TYATTTCATTGCTTCAAACTTTGAAGCTCCAAATTCAATTTCTCCTTGAAGCGCGCTTTCTTCCATGGAACAGAATTAGTGATATTTCACAAACTATAAAATTCCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25582</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>96013</contig_pos>
        <strand></strand>
        <context>attctgaaaa[C/T]ttaaaaattc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGAACGTTCTGGAAAGTCTCAAATTCCAAAAATTCGGAAATTCTGAAAA</left_flank>
        <right_flank>TTAAAAATTCAGAAAATCCGAAAAATCTGAAGAATTCTGGAAATCTAAAA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAACAAAGAAATTGATGACACAGAGAAACGAGGTCGGATGAGTCAACAAGGAAAAAATGGAAAAATTAGGGTTTTTGGGAGATTTGAATTTTTGGGTTTTTCAGATTTTCGGATTTTCAGAACTCTGGAATTTCAGTTTCAGAGAGCTTCGGGATTCCAGAATTTTGTAATTTCCGAATTTTCAGATATCGAACTGAAAAAAGGGAAACTGAAAAATTTTGAGTTTTTGAATTTTTGAAACATTTTCATAATAGGAAAAAAGTCTGAATTTTGTCAATTTTTGAATTTATAGAATTCTGAACTTTTTTGAAATTTTCAGGTATTTTGATATTTAAAAATTCAACAAATTTGAGTTTTTTCATTCGAAAATTCAAAAAATACGAAAGTCTAAATATTCAAAAAAAATTTTTAACTGTGAAATTCTAAAAATCTGAAAATATGAAAAATTGGAACGTTCTGGAAAGTCTCAAATTCCAAAAATTCGGAAATTCTGAAAACTTAAAAATTCAGAAAATCCGAAAAATCTGAAGAATTCTGGAAATCTAAAAAATTTGAAAATTTGGGCAACCGGAAAAATTTCAAAAATCGGAAAATCGGAAAAATCTGAAATTCTGAAAAATTGGGAAAATCTCAAAAATCGGAAAATCTGACACTCAGAAACTTCAAATTCTAAAAAATTGGAAGATCTGAAAATCTTAAAAATCGGAAAATCTGAAAAATTGGAAATTCTAAAAAATCTGAAAATCTGAAAATCTCAAAGCTTGGGCAATCGGAAATATCTGAAAAATGGATAATTCGAAAATTCAGATATTCAGAAAATGGGAAAGTCTGAAAAATTCTGAATCTGAAAATTCTAAGAATCTGAAAATTTGAGCAACCGGAAAAATTTTAAAAATCGGAAAATCTATAAAATTGGAACATCTGAAAATTGCTAGGTAATTCTGAAGAATTGAAAATTCTGAAAAGCTGAAAAATTGGAAAATCGAAAAATCAGAAAA</canonical>
            <polymorphic>GAGAACAAAGAAATTGATGACACAGAGAAACGAGGTCGGATGAGTCAACAAGGAAAAAATGGAAAAATTAGGGTTTTTGGGAGATTTGAATTTTTGGGTTTTTCAGATTTTCGGATTTTCAGAACTCTGGAATTTCAGTTTCAGAGAGCTTCGGGATTCCAGAATTTTGTAATTTCCGAATTTTCAGATATCGAACTGAAAAAAGGGAAACTGAAAAATTTTGAGTTTTTGAATTTTTGAAACATTTTCATAATAGGAAAAAAGTCTGAATTTTGTCAATTTTTGAATTTATAGAATTCTGAACTTTTTTGAAATTTTCAGGTATTTTGATATTTAAAAATTCAACAAATTTGAGTTTTTTCATTCGAAAATTCAAAAAATACGAAAGTCTAAATATTCAAAAAAAATTTTTAACTGTGAAATTCTAAAAATCTGAAAATATGAAAAATTGGAACGTTCTGGAAAGTCTCAAATTCCAAAAATTCGGAAATTCTGAAAAYTTAAAAATTCAGAAAATCCGAAAAATCTGAAGAATTCTGGAAATCTAAAAAATTTGAAAATTTGGGCAACCGGAAAAATTTCAAAAATCGGAAAATCGGAAAAATCTGAAATTCTGAAAAATTGGGAAAATCTCAAAAATCGGAAAATCTGACACTCAGAAACTTCAAATTCTAAAAAATTGGAAGATCTGAAAATCTTAAAAATCGGAAAATCTGAAAAATTGGAAATTCTAAAAAATCTGAAAATCTGAAAATCTCAAAGCTTGGGCAATCGGAAATATCTGAAAAATGGATAATTCGAAAATTCAGATATTCAGAAAATGGGAAAGTCTGAAAAATTCTGAATCTGAAAATTCTAAGAATCTGAAAATTTGAGCAACCGGAAAAATTTTAAAAATCGGAAAATCTATAAAATTGGAACATCTGAAAATTGCTAGGTAATTCTGAAGAATTGAAAATTCTGAAAAGCTGAAAAATTGGAAAATCGAAAAATCAGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAATTTTGTCAATTTTTGAAT</pcr_primer_p1>
		<pcr_primer_p2>CAATTTTATAGATTTTCCGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>652</pcr_amplicon_size>
		<canonical_amplicon>CTGAATTTTGTCAATTTTTGAATTTATAGAATTCTGAACTTTTTTGAAATTTTCAGGTATTTTGATATTTAAAAATTCAACAAATTTGAGTTTTTTCATTCGAAAATTCAAAAAATACGAAAGTCTAAATATTCAAAAAAAATTTTTAACTGTGAAATTCTAAAAATCTGAAAATATGAAAAATTGGAACGTTCTGGAAAGTCTCAAATTCCAAAAATTCGGAAATTCTGAAAACTTAAAAATTCAGAAAATCCGAAAAATCTGAAGAATTCTGGAAATCTAAAAAATTTGAAAATTTGGGCAACCGGAAAAATTTCAAAAATCGGAAAATCGGAAAAATCTGAAATTCTGAAAAATTGGGAAAATCTCAAAAATCGGAAAATCTGACACTCAGAAACTTCAAATTCTAAAAAATTGGAAGATCTGAAAATCTTAAAAATCGGAAAATCTGAAAAATTGGAAATTCTAAAAAATCTGAAAATCTGAAAATCTCAAAGCTTGGGCAATCGGAAATATCTGAAAAATGGATAATTCGAAAATTCAGATATTCAGAAAATGGGAAAGTCTGAAAAATTCTGAATCTGAAAATTCTAAGAATCTGAAAATTTGAGCAACCGGAAAAATTTTAAAAATCGGAAAATCTATAAAATTG</canonical_amplicon>
		<polymorphic_amplicon>CTGAATTTTGTCAATTTTTGAATTTATAGAATTCTGAACTTTTTTGAAATTTTCAGGTATTTTGATATTTAAAAATTCAACAAATTTGAGTTTTTTCATTCGAAAATTCAAAAAATACGAAAGTCTAAATATTCAAAAAAAATTTTTAACTGTGAAATTCTAAAAATCTGAAAATATGAAAAATTGGAACGTTCTGGAAAGTCTCAAATTCCAAAAATTCGGAAATTCTGAAAAYTTAAAAATTCAGAAAATCCGAAAAATCTGAAGAATTCTGGAAATCTAAAAAATTTGAAAATTTGGGCAACCGGAAAAATTTCAAAAATCGGAAAATCGGAAAAATCTGAAATTCTGAAAAATTGGGAAAATCTCAAAAATCGGAAAATCTGACACTCAGAAACTTCAAATTCTAAAAAATTGGAAGATCTGAAAATCTTAAAAATCGGAAAATCTGAAAAATTGGAAATTCTAAAAAATCTGAAAATCTGAAAATCTCAAAGCTTGGGCAATCGGAAATATCTGAAAAATGGATAATTCGAAAATTCAGATATTCAGAAAATGGGAAAGTCTGAAAAATTCTGAATCTGAAAATTCTAAGAATCTGAAAATTTGAGCAACCGGAAAAATTTTAAAAATCGGAAAATCTATAAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25583</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>96032</contig_pos>
        <strand></strand>
        <context>tcagaaaatc[C/G]gaaaaatctg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCAAATTCCAAAAATTCGGAAATTCTGAAAACTTAAAAATTCAGAAAATC</left_flank>
        <right_flank>GAAAAATCTGAAGAATTCTGGAAATCTAAAAAATTTGAAAATTTGGGCAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACAGAGAAACGAGGTCGGATGAGTCAACAAGGAAAAAATGGAAAAATTAGGGTTTTTGGGAGATTTGAATTTTTGGGTTTTTCAGATTTTCGGATTTTCAGAACTCTGGAATTTCAGTTTCAGAGAGCTTCGGGATTCCAGAATTTTGTAATTTCCGAATTTTCAGATATCGAACTGAAAAAAGGGAAACTGAAAAATTTTGAGTTTTTGAATTTTTGAAACATTTTCATAATAGGAAAAAAGTCTGAATTTTGTCAATTTTTGAATTTATAGAATTCTGAACTTTTTTGAAATTTTCAGGTATTTTGATATTTAAAAATTCAACAAATTTGAGTTTTTTCATTCGAAAATTCAAAAAATACGAAAGTCTAAATATTCAAAAAAAATTTTTAACTGTGAAATTCTAAAAATCTGAAAATATGAAAAATTGGAACGTTCTGGAAAGTCTCAAATTCCAAAAATTCGGAAATTCTGAAAACTTAAAAATTCAGAAAATCCGAAAAATCTGAAGAATTCTGGAAATCTAAAAAATTTGAAAATTTGGGCAACCGGAAAAATTTCAAAAATCGGAAAATCGGAAAAATCTGAAATTCTGAAAAATTGGGAAAATCTCAAAAATCGGAAAATCTGACACTCAGAAACTTCAAATTCTAAAAAATTGGAAGATCTGAAAATCTTAAAAATCGGAAAATCTGAAAAATTGGAAATTCTAAAAAATCTGAAAATCTGAAAATCTCAAAGCTTGGGCAATCGGAAATATCTGAAAAATGGATAATTCGAAAATTCAGATATTCAGAAAATGGGAAAGTCTGAAAAATTCTGAATCTGAAAATTCTAAGAATCTGAAAATTTGAGCAACCGGAAAAATTTTAAAAATCGGAAAATCTATAAAATTGGAACATCTGAAAATTGCTAGGTAATTCTGAAGAATTGAAAATTCTGAAAAGCTGAAAAATTGGAAAATCGAAAAATCAGAAAAATCGGAAATTCTGGAAAAT</canonical>
            <polymorphic>ACACAGAGAAACGAGGTCGGATGAGTCAACAAGGAAAAAATGGAAAAATTAGGGTTTTTGGGAGATTTGAATTTTTGGGTTTTTCAGATTTTCGGATTTTCAGAACTCTGGAATTTCAGTTTCAGAGAGCTTCGGGATTCCAGAATTTTGTAATTTCCGAATTTTCAGATATCGAACTGAAAAAAGGGAAACTGAAAAATTTTGAGTTTTTGAATTTTTGAAACATTTTCATAATAGGAAAAAAGTCTGAATTTTGTCAATTTTTGAATTTATAGAATTCTGAACTTTTTTGAAATTTTCAGGTATTTTGATATTTAAAAATTCAACAAATTTGAGTTTTTTCATTCGAAAATTCAAAAAATACGAAAGTCTAAATATTCAAAAAAAATTTTTAACTGTGAAATTCTAAAAATCTGAAAATATGAAAAATTGGAACGTTCTGGAAAGTCTCAAATTCCAAAAATTCGGAAATTCTGAAAACTTAAAAATTCAGAAAATCSGAAAAATCTGAAGAATTCTGGAAATCTAAAAAATTTGAAAATTTGGGCAACCGGAAAAATTTCAAAAATCGGAAAATCGGAAAAATCTGAAATTCTGAAAAATTGGGAAAATCTCAAAAATCGGAAAATCTGACACTCAGAAACTTCAAATTCTAAAAAATTGGAAGATCTGAAAATCTTAAAAATCGGAAAATCTGAAAAATTGGAAATTCTAAAAAATCTGAAAATCTGAAAATCTCAAAGCTTGGGCAATCGGAAATATCTGAAAAATGGATAATTCGAAAATTCAGATATTCAGAAAATGGGAAAGTCTGAAAAATTCTGAATCTGAAAATTCTAAGAATCTGAAAATTTGAGCAACCGGAAAAATTTTAAAAATCGGAAAATCTATAAAATTGGAACATCTGAAAATTGCTAGGTAATTCTGAAGAATTGAAAATTCTGAAAAGCTGAAAAATTGGAAAATCGAAAAATCAGAAAAATCGGAAATTCTGGAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAATTTTGTCAATTTTTGAAT</pcr_primer_p1>
		<pcr_primer_p2>CAATTTTATAGATTTTCCGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>652</pcr_amplicon_size>
		<canonical_amplicon>CTGAATTTTGTCAATTTTTGAATTTATAGAATTCTGAACTTTTTTGAAATTTTCAGGTATTTTGATATTTAAAAATTCAACAAATTTGAGTTTTTTCATTCGAAAATTCAAAAAATACGAAAGTCTAAATATTCAAAAAAAATTTTTAACTGTGAAATTCTAAAAATCTGAAAATATGAAAAATTGGAACGTTCTGGAAAGTCTCAAATTCCAAAAATTCGGAAATTCTGAAAACTTAAAAATTCAGAAAATCCGAAAAATCTGAAGAATTCTGGAAATCTAAAAAATTTGAAAATTTGGGCAACCGGAAAAATTTCAAAAATCGGAAAATCGGAAAAATCTGAAATTCTGAAAAATTGGGAAAATCTCAAAAATCGGAAAATCTGACACTCAGAAACTTCAAATTCTAAAAAATTGGAAGATCTGAAAATCTTAAAAATCGGAAAATCTGAAAAATTGGAAATTCTAAAAAATCTGAAAATCTGAAAATCTCAAAGCTTGGGCAATCGGAAATATCTGAAAAATGGATAATTCGAAAATTCAGATATTCAGAAAATGGGAAAGTCTGAAAAATTCTGAATCTGAAAATTCTAAGAATCTGAAAATTTGAGCAACCGGAAAAATTTTAAAAATCGGAAAATCTATAAAATTG</canonical_amplicon>
		<polymorphic_amplicon>CTGAATTTTGTCAATTTTTGAATTTATAGAATTCTGAACTTTTTTGAAATTTTCAGGTATTTTGATATTTAAAAATTCAACAAATTTGAGTTTTTTCATTCGAAAATTCAAAAAATACGAAAGTCTAAATATTCAAAAAAAATTTTTAACTGTGAAATTCTAAAAATCTGAAAATATGAAAAATTGGAACGTTCTGGAAAGTCTCAAATTCCAAAAATTCGGAAATTCTGAAAACTTAAAAATTCAGAAAATCSGAAAAATCTGAAGAATTCTGGAAATCTAAAAAATTTGAAAATTTGGGCAACCGGAAAAATTTCAAAAATCGGAAAATCGGAAAAATCTGAAATTCTGAAAAATTGGGAAAATCTCAAAAATCGGAAAATCTGACACTCAGAAACTTCAAATTCTAAAAAATTGGAAGATCTGAAAATCTTAAAAATCGGAAAATCTGAAAAATTGGAAATTCTAAAAAATCTGAAAATCTGAAAATCTCAAAGCTTGGGCAATCGGAAATATCTGAAAAATGGATAATTCGAAAATTCAGATATTCAGAAAATGGGAAAGTCTGAAAAATTCTGAATCTGAAAATTCTAAGAATCTGAAAATTTGAGCAACCGGAAAAATTTTAAAAATCGGAAAATCTATAAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25584</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>96255</contig_pos>
        <strand></strand>
        <context>taaaaaatct[G/C]aaaatctsaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AAAATCTTAAAAATCGGAAAATCTGAAAAATTGGAAATTCTAAAAAATCT</left_flank>
        <right_flank>AAAATCTGAAAATCTCAAAGCTTGGGCAATCGGAAATATCTGAAAAATGG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTTCATAATAGGAAAAAAGTCTGAATTTTGTCAATTTTTGAATTTATAGAATTCTGAACTTTTTTGAAATTTTCAGGTATTTTGATATTTAAAAATTCAACAAATTTGAGTTTTTTCATTCGAAAATTCAAAAAATACGAAAGTCTAAATATTCAAAAAAAATTTTTAACTGTGAAATTCTAAAAATCTGAAAATATGAAAAATTGGAACGTTCTGGAAAGTCTCAAATTCCAAAAATTCGGAAATTCTGAAAACTTAAAAATTCAGAAAATCCGAAAAATCTGAAGAATTCTGGAAATCTAAAAAATTTGAAAATTTGGGCAACCGGAAAAATTTCAAAAATCGGAAAATCGGAAAAATCTGAAATTCTGAAAAATTGGGAAAATCTCAAAAATCGGAAAATCTGACACTCAGAAACTTCAAATTCTAAAAAATTGGAAGATCTGAAAATCTTAAAAATCGGAAAATCTGAAAAATTGGAAATTCTAAAAAATCTGAAAATCTGAAAATCTCAAAGCTTGGGCAATCGGAAATATCTGAAAAATGGATAATTCGAAAATTCAGATATTCAGAAAATGGGAAAGTCTGAAAAATTCTGAATCTGAAAATTCTAAGAATCTGAAAATTTGAGCAACCGGAAAAATTTTAAAAATCGGAAAATCTATAAAATTGGAACATCTGAAAATTGCTAGGTAATTCTGAAGAATTGAAAATTCTGAAAAGCTGAAAAATTGGAAAATCGAAAAATCAGAAAAATCGGAAATTCTGGAAAATGGGAAAATCTCGAAAATCGAAAATTCAAAAATACAGAAAATCAGAAAAATCGGAAAATTTGAAAAATCGGGAAATCTAAAAACGGAAACTCTGAAAATTGCTAATTCTGAAGAATTCCAAAATATGAGATTTAGAAAAATCGAGAAATCGAGAATTGTTTTGGTTTTTGCCTAAGCTTATAATTTAAAAAAAAACGAAAAAAATTTCAGCCAGAAAAATACTG</canonical>
            <polymorphic>CATTTTCATAATAGGAAAAAAGTCTGAATTTTGTCAATTTTTGAATTTATAGAATTCTGAACTTTTTTGAAATTTTCAGGTATTTTGATATTTAAAAATTCAACAAATTTGAGTTTTTTCATTCGAAAATTCAAAAAATACGAAAGTCTAAATATTCAAAAAAAATTTTTAACTGTGAAATTCTAAAAATCTGAAAATATGAAAAATTGGAACGTTCTGGAAAGTCTCAAATTCCAAAAATTCGGAAATTCTGAAAACTTAAAAATTCAGAAAATCCGAAAAATCTGAAGAATTCTGGAAATCTAAAAAATTTGAAAATTTGGGCAACCGGAAAAATTTCAAAAATCGGAAAATCGGAAAAATCTGAAATTCTGAAAAATTGGGAAAATCTCAAAAATCGGAAAATCTGACACTCAGAAACTTCAAATTCTAAAAAATTGGAAGATCTGAAAATCTTAAAAATCGGAAAATCTGAAAAATTGGAAATTCTAAAAAATCTSAAAATCTGAAAATCTCAAAGCTTGGGCAATCGGAAATATCTGAAAAATGGATAATTCGAAAATTCAGATATTCAGAAAATGGGAAAGTCTGAAAAATTCTGAATCTGAAAATTCTAAGAATCTGAAAATTTGAGCAACCGGAAAAATTTTAAAAATCGGAAAATCTATAAAATTGGAACATCTGAAAATTGCTAGGTAATTCTGAAGAATTGAAAATTCTGAAAAGCTGAAAAATTGGAAAATCGAAAAATCAGAAAAATCGGAAATTCTGGAAAATGGGAAAATCTCGAAAATCGAAAATTCAAAAATACAGAAAATCAGAAAAATCGGAAAATTTGAAAAATCGGGAAATCTAAAAACGGAAACTCTGAAAATTGCTAATTCTGAAGAATTCCAAAATATGAGATTTAGAAAAATCGAGAAATCGAGAATTGTTTTGGTTTTTGCCTAAGCTTATAATTTAAAAAAAAACGAAAAAAATTTCAGCCAGAAAAATACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>134 115 62 58 52 40 35 33 33 32 27 26 25 25 25 25 20 17 17 17 17 16 16 10 9 9 9 9 9 8 8 8 8 8 8 8 8 8 6</canonical_bands>
                <polymorphic_bands>134 115 62 58 52 40 35 34 33 33 32 27 25 25 25 25 20 17 17 17 17 16 16 10 9 9 9 9 9 8 8 8 8 8 8 8 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAATTTTGTCAATTTTTGAAT</pcr_primer_p1>
		<pcr_primer_p2>CAATTTTATAGATTTTCCGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>652</pcr_amplicon_size>
		<canonical_amplicon>CTGAATTTTGTCAATTTTTGAATTTATAGAATTCTGAACTTTTTTGAAATTTTCAGGTATTTTGATATTTAAAAATTCAACAAATTTGAGTTTTTTCATTCGAAAATTCAAAAAATACGAAAGTCTAAATATTCAAAAAAAATTTTTAACTGTGAAATTCTAAAAATCTGAAAATATGAAAAATTGGAACGTTCTGGAAAGTCTCAAATTCCAAAAATTCGGAAATTCTGAAAACTTAAAAATTCAGAAAATCCGAAAAATCTGAAGAATTCTGGAAATCTAAAAAATTTGAAAATTTGGGCAACCGGAAAAATTTCAAAAATCGGAAAATCGGAAAAATCTGAAATTCTGAAAAATTGGGAAAATCTCAAAAATCGGAAAATCTGACACTCAGAAACTTCAAATTCTAAAAAATTGGAAGATCTGAAAATCTTAAAAATCGGAAAATCTGAAAAATTGGAAATTCTAAAAAATCTGAAAATCTGAAAATCTCAAAGCTTGGGCAATCGGAAATATCTGAAAAATGGATAATTCGAAAATTCAGATATTCAGAAAATGGGAAAGTCTGAAAAATTCTGAATCTGAAAATTCTAAGAATCTGAAAATTTGAGCAACCGGAAAAATTTTAAAAATCGGAAAATCTATAAAATTG</canonical_amplicon>
		<polymorphic_amplicon>CTGAATTTTGTCAATTTTTGAATTTATAGAATTCTGAACTTTTTTGAAATTTTCAGGTATTTTGATATTTAAAAATTCAACAAATTTGAGTTTTTTCATTCGAAAATTCAAAAAATACGAAAGTCTAAATATTCAAAAAAAATTTTTAACTGTGAAATTCTAAAAATCTGAAAATATGAAAAATTGGAACGTTCTGGAAAGTCTCAAATTCCAAAAATTCGGAAATTCTGAAAACTTAAAAATTCAGAAAATCCGAAAAATCTGAAGAATTCTGGAAATCTAAAAAATTTGAAAATTTGGGCAACCGGAAAAATTTCAAAAATCGGAAAATCGGAAAAATCTGAAATTCTGAAAAATTGGGAAAATCTCAAAAATCGGAAAATCTGACACTCAGAAACTTCAAATTCTAAAAAATTGGAAGATCTGAAAATCTTAAAAATCGGAAAATCTGAAAAATTGGAAATTCTAAAAAATCTSAAAATCTGAAAATCTCAAAGCTTGGGCAATCGGAAATATCTGAAAAATGGATAATTCGAAAATTCAGATATTCAGAAAATGGGAAAGTCTGAAAAATTCTGAATCTGAAAATTCTAAGAATCTGAAAATTTGAGCAACCGGAAAAATTTTAAAAATCGGAAAATCTATAAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25585</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>96263</contig_pos>
        <strand></strand>
        <context>ctsaaaatct[G/C]aaaatctcaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AAAAATCGGAAAATCTGAAAAATTGGAAATTCTAAAAAATCTGAAAATCT</left_flank>
        <right_flank>AAAATCTCAAAGCTTGGGCAATCGGAAATATCTGAAAAATGGATAATTCG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATAGGAAAAAAGTCTGAATTTTGTCAATTTTTGAATTTATAGAATTCTGAACTTTTTTGAAATTTTCAGGTATTTTGATATTTAAAAATTCAACAAATTTGAGTTTTTTCATTCGAAAATTCAAAAAATACGAAAGTCTAAATATTCAAAAAAAATTTTTAACTGTGAAATTCTAAAAATCTGAAAATATGAAAAATTGGAACGTTCTGGAAAGTCTCAAATTCCAAAAATTCGGAAATTCTGAAAACTTAAAAATTCAGAAAATCCGAAAAATCTGAAGAATTCTGGAAATCTAAAAAATTTGAAAATTTGGGCAACCGGAAAAATTTCAAAAATCGGAAAATCGGAAAAATCTGAAATTCTGAAAAATTGGGAAAATCTCAAAAATCGGAAAATCTGACACTCAGAAACTTCAAATTCTAAAAAATTGGAAGATCTGAAAATCTTAAAAATCGGAAAATCTGAAAAATTGGAAATTCTAAAAAATCTGAAAATCTGAAAATCTCAAAGCTTGGGCAATCGGAAATATCTGAAAAATGGATAATTCGAAAATTCAGATATTCAGAAAATGGGAAAGTCTGAAAAATTCTGAATCTGAAAATTCTAAGAATCTGAAAATTTGAGCAACCGGAAAAATTTTAAAAATCGGAAAATCTATAAAATTGGAACATCTGAAAATTGCTAGGTAATTCTGAAGAATTGAAAATTCTGAAAAGCTGAAAAATTGGAAAATCGAAAAATCAGAAAAATCGGAAATTCTGGAAAATGGGAAAATCTCGAAAATCGAAAATTCAAAAATACAGAAAATCAGAAAAATCGGAAAATTTGAAAAATCGGGAAATCTAAAAACGGAAACTCTGAAAATTGCTAATTCTGAAGAATTCCAAAATATGAGATTTAGAAAAATCGAGAAATCGAGAATTGTTTTGGTTTTTGCCTAAGCTTATAATTTAAAAAAAAACGAAAAAAATTTCAGCCAGAAAAATACTGAAATTGGC</canonical>
            <polymorphic>TAATAGGAAAAAAGTCTGAATTTTGTCAATTTTTGAATTTATAGAATTCTGAACTTTTTTGAAATTTTCAGGTATTTTGATATTTAAAAATTCAACAAATTTGAGTTTTTTCATTCGAAAATTCAAAAAATACGAAAGTCTAAATATTCAAAAAAAATTTTTAACTGTGAAATTCTAAAAATCTGAAAATATGAAAAATTGGAACGTTCTGGAAAGTCTCAAATTCCAAAAATTCGGAAATTCTGAAAACTTAAAAATTCAGAAAATCCGAAAAATCTGAAGAATTCTGGAAATCTAAAAAATTTGAAAATTTGGGCAACCGGAAAAATTTCAAAAATCGGAAAATCGGAAAAATCTGAAATTCTGAAAAATTGGGAAAATCTCAAAAATCGGAAAATCTGACACTCAGAAACTTCAAATTCTAAAAAATTGGAAGATCTGAAAATCTTAAAAATCGGAAAATCTGAAAAATTGGAAATTCTAAAAAATCTGAAAATCTSAAAATCTCAAAGCTTGGGCAATCGGAAATATCTGAAAAATGGATAATTCGAAAATTCAGATATTCAGAAAATGGGAAAGTCTGAAAAATTCTGAATCTGAAAATTCTAAGAATCTGAAAATTTGAGCAACCGGAAAAATTTTAAAAATCGGAAAATCTATAAAATTGGAACATCTGAAAATTGCTAGGTAATTCTGAAGAATTGAAAATTCTGAAAAGCTGAAAAATTGGAAAATCGAAAAATCAGAAAAATCGGAAATTCTGGAAAATGGGAAAATCTCGAAAATCGAAAATTCAAAAATACAGAAAATCAGAAAAATCGGAAAATTTGAAAAATCGGGAAATCTAAAAACGGAAACTCTGAAAATTGCTAATTCTGAAGAATTCCAAAATATGAGATTTAGAAAAATCGAGAAATCGAGAATTGTTTTGGTTTTTGCCTAAGCTTATAATTTAAAAAAAAACGAAAAAAATTTCAGCCAGAAAAATACTGAAATTGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>134 123 62 58 52 40 35 33 33 32 27 26 25 25 25 20 17 17 17 17 17 16 16 10 9 9 9 9 9 8 8 8 8 8 8 8 8 8 6</canonical_bands>
                <polymorphic_bands>134 123 62 58 52 40 35 33 33 33 32 27 26 25 25 20 17 17 17 17 17 16 16 10 9 9 9 9 9 8 8 8 8 8 8 8 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAATTTTGTCAATTTTTGAAT</pcr_primer_p1>
		<pcr_primer_p2>CAATTTTATAGATTTTCCGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>652</pcr_amplicon_size>
		<canonical_amplicon>CTGAATTTTGTCAATTTTTGAATTTATAGAATTCTGAACTTTTTTGAAATTTTCAGGTATTTTGATATTTAAAAATTCAACAAATTTGAGTTTTTTCATTCGAAAATTCAAAAAATACGAAAGTCTAAATATTCAAAAAAAATTTTTAACTGTGAAATTCTAAAAATCTGAAAATATGAAAAATTGGAACGTTCTGGAAAGTCTCAAATTCCAAAAATTCGGAAATTCTGAAAACTTAAAAATTCAGAAAATCCGAAAAATCTGAAGAATTCTGGAAATCTAAAAAATTTGAAAATTTGGGCAACCGGAAAAATTTCAAAAATCGGAAAATCGGAAAAATCTGAAATTCTGAAAAATTGGGAAAATCTCAAAAATCGGAAAATCTGACACTCAGAAACTTCAAATTCTAAAAAATTGGAAGATCTGAAAATCTTAAAAATCGGAAAATCTGAAAAATTGGAAATTCTAAAAAATCTGAAAATCTGAAAATCTCAAAGCTTGGGCAATCGGAAATATCTGAAAAATGGATAATTCGAAAATTCAGATATTCAGAAAATGGGAAAGTCTGAAAAATTCTGAATCTGAAAATTCTAAGAATCTGAAAATTTGAGCAACCGGAAAAATTTTAAAAATCGGAAAATCTATAAAATTG</canonical_amplicon>
		<polymorphic_amplicon>CTGAATTTTGTCAATTTTTGAATTTATAGAATTCTGAACTTTTTTGAAATTTTCAGGTATTTTGATATTTAAAAATTCAACAAATTTGAGTTTTTTCATTCGAAAATTCAAAAAATACGAAAGTCTAAATATTCAAAAAAAATTTTTAACTGTGAAATTCTAAAAATCTGAAAATATGAAAAATTGGAACGTTCTGGAAAGTCTCAAATTCCAAAAATTCGGAAATTCTGAAAACTTAAAAATTCAGAAAATCCGAAAAATCTGAAGAATTCTGGAAATCTAAAAAATTTGAAAATTTGGGCAACCGGAAAAATTTCAAAAATCGGAAAATCGGAAAAATCTGAAATTCTGAAAAATTGGGAAAATCTCAAAAATCGGAAAATCTGACACTCAGAAACTTCAAATTCTAAAAAATTGGAAGATCTGAAAATCTTAAAAATCGGAAAATCTGAAAAATTGGAAATTCTAAAAAATCTGAAAATCTSAAAATCTCAAAGCTTGGGCAATCGGAAATATCTGAAAAATGGATAATTCGAAAATTCAGATATTCAGAAAATGGGAAAGTCTGAAAAATTCTGAATCTGAAAATTCTAAGAATCTGAAAATTTGAGCAACCGGAAAAATTTTAAAAATCGGAAAATCTATAAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25586</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>96275</contig_pos>
        <strand></strand>
        <context>aaatctcaaa[G/A]yttgggcart</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATCTGAAAAATTGGAAATTCTAAAAAATCTGAAAATCTGAAAATCTCAAA</left_flank>
        <right_flank>CTTGGGCAATCGGAAATATCTGAAAAATGGATAATTCGAAAATTCAGATA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTCTGAATTTTGTCAATTTTTGAATTTATAGAATTCTGAACTTTTTTGAAATTTTCAGGTATTTTGATATTTAAAAATTCAACAAATTTGAGTTTTTTCATTCGAAAATTCAAAAAATACGAAAGTCTAAATATTCAAAAAAAATTTTTAACTGTGAAATTCTAAAAATCTGAAAATATGAAAAATTGGAACGTTCTGGAAAGTCTCAAATTCCAAAAATTCGGAAATTCTGAAAACTTAAAAATTCAGAAAATCCGAAAAATCTGAAGAATTCTGGAAATCTAAAAAATTTGAAAATTTGGGCAACCGGAAAAATTTCAAAAATCGGAAAATCGGAAAAATCTGAAATTCTGAAAAATTGGGAAAATCTCAAAAATCGGAAAATCTGACACTCAGAAACTTCAAATTCTAAAAAATTGGAAGATCTGAAAATCTTAAAAATCGGAAAATCTGAAAAATTGGAAATTCTAAAAAATCTGAAAATCTGAAAATCTCAAAGCTTGGGCAATCGGAAATATCTGAAAAATGGATAATTCGAAAATTCAGATATTCAGAAAATGGGAAAGTCTGAAAAATTCTGAATCTGAAAATTCTAAGAATCTGAAAATTTGAGCAACCGGAAAAATTTTAAAAATCGGAAAATCTATAAAATTGGAACATCTGAAAATTGCTAGGTAATTCTGAAGAATTGAAAATTCTGAAAAGCTGAAAAATTGGAAAATCGAAAAATCAGAAAAATCGGAAATTCTGGAAAATGGGAAAATCTCGAAAATCGAAAATTCAAAAATACAGAAAATCAGAAAAATCGGAAAATTTGAAAAATCGGGAAATCTAAAAACGGAAACTCTGAAAATTGCTAATTCTGAAGAATTCCAAAATATGAGATTTAGAAAAATCGAGAAATCGAGAATTGTTTTGGTTTTTGCCTAAGCTTATAATTTAAAAAAAAACGAAAAAAATTTCAGCCAGAAAAATACTGAAATTGGCGAAAATCAGTGA</canonical>
            <polymorphic>AGTCTGAATTTTGTCAATTTTTGAATTTATAGAATTCTGAACTTTTTTGAAATTTTCAGGTATTTTGATATTTAAAAATTCAACAAATTTGAGTTTTTTCATTCGAAAATTCAAAAAATACGAAAGTCTAAATATTCAAAAAAAATTTTTAACTGTGAAATTCTAAAAATCTGAAAATATGAAAAATTGGAACGTTCTGGAAAGTCTCAAATTCCAAAAATTCGGAAATTCTGAAAACTTAAAAATTCAGAAAATCCGAAAAATCTGAAGAATTCTGGAAATCTAAAAAATTTGAAAATTTGGGCAACCGGAAAAATTTCAAAAATCGGAAAATCGGAAAAATCTGAAATTCTGAAAAATTGGGAAAATCTCAAAAATCGGAAAATCTGACACTCAGAAACTTCAAATTCTAAAAAATTGGAAGATCTGAAAATCTTAAAAATCGGAAAATCTGAAAAATTGGAAATTCTAAAAAATCTGAAAATCTGAAAATCTCAAARCTTGGGCAATCGGAAATATCTGAAAAATGGATAATTCGAAAATTCAGATATTCAGAAAATGGGAAAGTCTGAAAAATTCTGAATCTGAAAATTCTAAGAATCTGAAAATTTGAGCAACCGGAAAAATTTTAAAAATCGGAAAATCTATAAAATTGGAACATCTGAAAATTGCTAGGTAATTCTGAAGAATTGAAAATTCTGAAAAGCTGAAAAATTGGAAAATCGAAAAATCAGAAAAATCGGAAATTCTGGAAAATGGGAAAATCTCGAAAATCGAAAATTCAAAAATACAGAAAATCAGAAAAATCGGAAAATTTGAAAAATCGGGAAATCTAAAAACGGAAACTCTGAAAATTGCTAATTCTGAAGAATTCCAAAATATGAGATTTAGAAAAATCGAGAAATCGAGAATTGTTTTGGTTTTTGCCTAAGCTTATAATTTAAAAAAAAACGAAAAAAATTTCAGCCAGAAAAATACTGAAATTGGCGAAAATCAGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>500 226 206 68</canonical_bands>
                <polymorphic_bands>706 226 68</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>500 226 206 34 34</canonical_bands>
                <polymorphic_bands>706 226 34 34</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>498 432 70</canonical_bands>
                <polymorphic_bands>930 70</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAATTTTGTCAATTTTTGAAT</pcr_primer_p1>
		<pcr_primer_p2>CAATTTTATAGATTTTCCGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>652</pcr_amplicon_size>
		<canonical_amplicon>CTGAATTTTGTCAATTTTTGAATTTATAGAATTCTGAACTTTTTTGAAATTTTCAGGTATTTTGATATTTAAAAATTCAACAAATTTGAGTTTTTTCATTCGAAAATTCAAAAAATACGAAAGTCTAAATATTCAAAAAAAATTTTTAACTGTGAAATTCTAAAAATCTGAAAATATGAAAAATTGGAACGTTCTGGAAAGTCTCAAATTCCAAAAATTCGGAAATTCTGAAAACTTAAAAATTCAGAAAATCCGAAAAATCTGAAGAATTCTGGAAATCTAAAAAATTTGAAAATTTGGGCAACCGGAAAAATTTCAAAAATCGGAAAATCGGAAAAATCTGAAATTCTGAAAAATTGGGAAAATCTCAAAAATCGGAAAATCTGACACTCAGAAACTTCAAATTCTAAAAAATTGGAAGATCTGAAAATCTTAAAAATCGGAAAATCTGAAAAATTGGAAATTCTAAAAAATCTGAAAATCTGAAAATCTCAAAGCTTGGGCAATCGGAAATATCTGAAAAATGGATAATTCGAAAATTCAGATATTCAGAAAATGGGAAAGTCTGAAAAATTCTGAATCTGAAAATTCTAAGAATCTGAAAATTTGAGCAACCGGAAAAATTTTAAAAATCGGAAAATCTATAAAATTG</canonical_amplicon>
		<polymorphic_amplicon>CTGAATTTTGTCAATTTTTGAATTTATAGAATTCTGAACTTTTTTGAAATTTTCAGGTATTTTGATATTTAAAAATTCAACAAATTTGAGTTTTTTCATTCGAAAATTCAAAAAATACGAAAGTCTAAATATTCAAAAAAAATTTTTAACTGTGAAATTCTAAAAATCTGAAAATATGAAAAATTGGAACGTTCTGGAAAGTCTCAAATTCCAAAAATTCGGAAATTCTGAAAACTTAAAAATTCAGAAAATCCGAAAAATCTGAAGAATTCTGGAAATCTAAAAAATTTGAAAATTTGGGCAACCGGAAAAATTTCAAAAATCGGAAAATCGGAAAAATCTGAAATTCTGAAAAATTGGGAAAATCTCAAAAATCGGAAAATCTGACACTCAGAAACTTCAAATTCTAAAAAATTGGAAGATCTGAAAATCTTAAAAATCGGAAAATCTGAAAAATTGGAAATTCTAAAAAATCTGAAAATCTGAAAATCTCAAARCTTGGGCAATCGGAAATATCTGAAAAATGGATAATTCGAAAATTCAGATATTCAGAAAATGGGAAAGTCTGAAAAATTCTGAATCTGAAAATTCTAAGAATCTGAAAATTTGAGCAACCGGAAAAATTTTAAAAATCGGAAAATCTATAAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25587</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>96276</contig_pos>
        <strand></strand>
        <context>aatctcaaar[C/T]ttgggcartc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTGAAAAATTGGAAATTCTAAAAAATCTGAAAATCTGAAAATCTCAAAG</left_flank>
        <right_flank>TTGGGCAATCGGAAATATCTGAAAAATGGATAATTCGAAAATTCAGATAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCTGAATTTTGTCAATTTTTGAATTTATAGAATTCTGAACTTTTTTGAAATTTTCAGGTATTTTGATATTTAAAAATTCAACAAATTTGAGTTTTTTCATTCGAAAATTCAAAAAATACGAAAGTCTAAATATTCAAAAAAAATTTTTAACTGTGAAATTCTAAAAATCTGAAAATATGAAAAATTGGAACGTTCTGGAAAGTCTCAAATTCCAAAAATTCGGAAATTCTGAAAACTTAAAAATTCAGAAAATCCGAAAAATCTGAAGAATTCTGGAAATCTAAAAAATTTGAAAATTTGGGCAACCGGAAAAATTTCAAAAATCGGAAAATCGGAAAAATCTGAAATTCTGAAAAATTGGGAAAATCTCAAAAATCGGAAAATCTGACACTCAGAAACTTCAAATTCTAAAAAATTGGAAGATCTGAAAATCTTAAAAATCGGAAAATCTGAAAAATTGGAAATTCTAAAAAATCTGAAAATCTGAAAATCTCAAAGCTTGGGCAATCGGAAATATCTGAAAAATGGATAATTCGAAAATTCAGATATTCAGAAAATGGGAAAGTCTGAAAAATTCTGAATCTGAAAATTCTAAGAATCTGAAAATTTGAGCAACCGGAAAAATTTTAAAAATCGGAAAATCTATAAAATTGGAACATCTGAAAATTGCTAGGTAATTCTGAAGAATTGAAAATTCTGAAAAGCTGAAAAATTGGAAAATCGAAAAATCAGAAAAATCGGAAATTCTGGAAAATGGGAAAATCTCGAAAATCGAAAATTCAAAAATACAGAAAATCAGAAAAATCGGAAAATTTGAAAAATCGGGAAATCTAAAAACGGAAACTCTGAAAATTGCTAATTCTGAAGAATTCCAAAATATGAGATTTAGAAAAATCGAGAAATCGAGAATTGTTTTGGTTTTTGCCTAAGCTTATAATTTAAAAAAAAACGAAAAAAATTTCAGCCAGAAAAATACTGAAATTGGCGAAAATCAGTGAA</canonical>
            <polymorphic>GTCTGAATTTTGTCAATTTTTGAATTTATAGAATTCTGAACTTTTTTGAAATTTTCAGGTATTTTGATATTTAAAAATTCAACAAATTTGAGTTTTTTCATTCGAAAATTCAAAAAATACGAAAGTCTAAATATTCAAAAAAAATTTTTAACTGTGAAATTCTAAAAATCTGAAAATATGAAAAATTGGAACGTTCTGGAAAGTCTCAAATTCCAAAAATTCGGAAATTCTGAAAACTTAAAAATTCAGAAAATCCGAAAAATCTGAAGAATTCTGGAAATCTAAAAAATTTGAAAATTTGGGCAACCGGAAAAATTTCAAAAATCGGAAAATCGGAAAAATCTGAAATTCTGAAAAATTGGGAAAATCTCAAAAATCGGAAAATCTGACACTCAGAAACTTCAAATTCTAAAAAATTGGAAGATCTGAAAATCTTAAAAATCGGAAAATCTGAAAAATTGGAAATTCTAAAAAATCTGAAAATCTGAAAATCTCAAAGYTTGGGCAATCGGAAATATCTGAAAAATGGATAATTCGAAAATTCAGATATTCAGAAAATGGGAAAGTCTGAAAAATTCTGAATCTGAAAATTCTAAGAATCTGAAAATTTGAGCAACCGGAAAAATTTTAAAAATCGGAAAATCTATAAAATTGGAACATCTGAAAATTGCTAGGTAATTCTGAAGAATTGAAAATTCTGAAAAGCTGAAAAATTGGAAAATCGAAAAATCAGAAAAATCGGAAATTCTGGAAAATGGGAAAATCTCGAAAATCGAAAATTCAAAAATACAGAAAATCAGAAAAATCGGAAAATTTGAAAAATCGGGAAATCTAAAAACGGAAACTCTGAAAATTGCTAATTCTGAAGAATTCCAAAATATGAGATTTAGAAAAATCGAGAAATCGAGAATTGTTTTGGTTTTTGCCTAAGCTTATAATTTAAAAAAAAACGAAAAAAATTTCAGCCAGAAAAATACTGAAATTGGCGAAAATCAGTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>499 226 206 69</canonical_bands>
                <polymorphic_bands>705 226 69</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>499 226 206 35 34</canonical_bands>
                <polymorphic_bands>705 226 35 34</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>497 432 71</canonical_bands>
                <polymorphic_bands>929 71</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAATTTTGTCAATTTTTGAAT</pcr_primer_p1>
		<pcr_primer_p2>CAATTTTATAGATTTTCCGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>652</pcr_amplicon_size>
		<canonical_amplicon>CTGAATTTTGTCAATTTTTGAATTTATAGAATTCTGAACTTTTTTGAAATTTTCAGGTATTTTGATATTTAAAAATTCAACAAATTTGAGTTTTTTCATTCGAAAATTCAAAAAATACGAAAGTCTAAATATTCAAAAAAAATTTTTAACTGTGAAATTCTAAAAATCTGAAAATATGAAAAATTGGAACGTTCTGGAAAGTCTCAAATTCCAAAAATTCGGAAATTCTGAAAACTTAAAAATTCAGAAAATCCGAAAAATCTGAAGAATTCTGGAAATCTAAAAAATTTGAAAATTTGGGCAACCGGAAAAATTTCAAAAATCGGAAAATCGGAAAAATCTGAAATTCTGAAAAATTGGGAAAATCTCAAAAATCGGAAAATCTGACACTCAGAAACTTCAAATTCTAAAAAATTGGAAGATCTGAAAATCTTAAAAATCGGAAAATCTGAAAAATTGGAAATTCTAAAAAATCTGAAAATCTGAAAATCTCAAAGCTTGGGCAATCGGAAATATCTGAAAAATGGATAATTCGAAAATTCAGATATTCAGAAAATGGGAAAGTCTGAAAAATTCTGAATCTGAAAATTCTAAGAATCTGAAAATTTGAGCAACCGGAAAAATTTTAAAAATCGGAAAATCTATAAAATTG</canonical_amplicon>
		<polymorphic_amplicon>CTGAATTTTGTCAATTTTTGAATTTATAGAATTCTGAACTTTTTTGAAATTTTCAGGTATTTTGATATTTAAAAATTCAACAAATTTGAGTTTTTTCATTCGAAAATTCAAAAAATACGAAAGTCTAAATATTCAAAAAAAATTTTTAACTGTGAAATTCTAAAAATCTGAAAATATGAAAAATTGGAACGTTCTGGAAAGTCTCAAATTCCAAAAATTCGGAAATTCTGAAAACTTAAAAATTCAGAAAATCCGAAAAATCTGAAGAATTCTGGAAATCTAAAAAATTTGAAAATTTGGGCAACCGGAAAAATTTCAAAAATCGGAAAATCGGAAAAATCTGAAATTCTGAAAAATTGGGAAAATCTCAAAAATCGGAAAATCTGACACTCAGAAACTTCAAATTCTAAAAAATTGGAAGATCTGAAAATCTTAAAAATCGGAAAATCTGAAAAATTGGAAATTCTAAAAAATCTGAAAATCTGAAAATCTCAAAGYTTGGGCAATCGGAAATATCTGAAAAATGGATAATTCGAAAATTCAGATATTCAGAAAATGGGAAAGTCTGAAAAATTCTGAATCTGAAAATTCTAAGAATCTGAAAATTTGAGCAACCGGAAAAATTTTAAAAATCGGAAAATCTATAAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25588</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>96284</contig_pos>
        <strand></strand>
        <context>aryttgggca[A/G]tcggaaatat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGGAAATTCTAAAAAATCTGAAAATCTGAAAATCTCAAAGCTTGGGCA</left_flank>
        <right_flank>TCGGAAATATCTGAAAAATGGATAATTCGAAAATTCAGATATTCAGAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGTCAATTTTTGAATTTATAGAATTCTGAACTTTTTTGAAATTTTCAGGTATTTTGATATTTAAAAATTCAACAAATTTGAGTTTTTTCATTCGAAAATTCAAAAAATACGAAAGTCTAAATATTCAAAAAAAATTTTTAACTGTGAAATTCTAAAAATCTGAAAATATGAAAAATTGGAACGTTCTGGAAAGTCTCAAATTCCAAAAATTCGGAAATTCTGAAAACTTAAAAATTCAGAAAATCCGAAAAATCTGAAGAATTCTGGAAATCTAAAAAATTTGAAAATTTGGGCAACCGGAAAAATTTCAAAAATCGGAAAATCGGAAAAATCTGAAATTCTGAAAAATTGGGAAAATCTCAAAAATCGGAAAATCTGACACTCAGAAACTTCAAATTCTAAAAAATTGGAAGATCTGAAAATCTTAAAAATCGGAAAATCTGAAAAATTGGAAATTCTAAAAAATCTGAAAATCTGAAAATCTCAAAGCTTGGGCAATCGGAAATATCTGAAAAATGGATAATTCGAAAATTCAGATATTCAGAAAATGGGAAAGTCTGAAAAATTCTGAATCTGAAAATTCTAAGAATCTGAAAATTTGAGCAACCGGAAAAATTTTAAAAATCGGAAAATCTATAAAATTGGAACATCTGAAAATTGCTAGGTAATTCTGAAGAATTGAAAATTCTGAAAAGCTGAAAAATTGGAAAATCGAAAAATCAGAAAAATCGGAAATTCTGGAAAATGGGAAAATCTCGAAAATCGAAAATTCAAAAATACAGAAAATCAGAAAAATCGGAAAATTTGAAAAATCGGGAAATCTAAAAACGGAAACTCTGAAAATTGCTAATTCTGAAGAATTCCAAAATATGAGATTTAGAAAAATCGAGAAATCGAGAATTGTTTTGGTTTTTGCCTAAGCTTATAATTTAAAAAAAAACGAAAAAAATTTCAGCCAGAAAAATACTGAAATTGGCGAAAATCAGTGAAAATCGCAC</canonical>
            <polymorphic>TTTGTCAATTTTTGAATTTATAGAATTCTGAACTTTTTTGAAATTTTCAGGTATTTTGATATTTAAAAATTCAACAAATTTGAGTTTTTTCATTCGAAAATTCAAAAAATACGAAAGTCTAAATATTCAAAAAAAATTTTTAACTGTGAAATTCTAAAAATCTGAAAATATGAAAAATTGGAACGTTCTGGAAAGTCTCAAATTCCAAAAATTCGGAAATTCTGAAAACTTAAAAATTCAGAAAATCCGAAAAATCTGAAGAATTCTGGAAATCTAAAAAATTTGAAAATTTGGGCAACCGGAAAAATTTCAAAAATCGGAAAATCGGAAAAATCTGAAATTCTGAAAAATTGGGAAAATCTCAAAAATCGGAAAATCTGACACTCAGAAACTTCAAATTCTAAAAAATTGGAAGATCTGAAAATCTTAAAAATCGGAAAATCTGAAAAATTGGAAATTCTAAAAAATCTGAAAATCTGAAAATCTCAAAGCTTGGGCARTCGGAAATATCTGAAAAATGGATAATTCGAAAATTCAGATATTCAGAAAATGGGAAAGTCTGAAAAATTCTGAATCTGAAAATTCTAAGAATCTGAAAATTTGAGCAACCGGAAAAATTTTAAAAATCGGAAAATCTATAAAATTGGAACATCTGAAAATTGCTAGGTAATTCTGAAGAATTGAAAATTCTGAAAAGCTGAAAAATTGGAAAATCGAAAAATCAGAAAAATCGGAAATTCTGGAAAATGGGAAAATCTCGAAAATCGAAAATTCAAAAATACAGAAAATCAGAAAAATCGGAAAATTTGAAAAATCGGGAAATCTAAAAACGGAAACTCTGAAAATTGCTAATTCTGAAGAATTCCAAAATATGAGATTTAGAAAAATCGAGAAATCGAGAATTGTTTTGGTTTTTGCCTAAGCTTATAATTTAAAAAAAAACGAAAAAAATTTCAGCCAGAAAAATACTGAAATTGGCGAAAATCAGTGAAAATCGCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAATTTTGTCAATTTTTGAAT</pcr_primer_p1>
		<pcr_primer_p2>CAATTTTATAGATTTTCCGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>652</pcr_amplicon_size>
		<canonical_amplicon>AATCGGAAATATCTGAAAAATGGATAATTCGAAAATTCAGATATTCAGAAAATGGGAAAGTCTGAAAAATTCTGAATCTGAAAATTCTAAGAATCTGAAAATTTGAGCAACCGGAAAAATTTTAAAAATCGGAAAATCTATAAAATTG</canonical_amplicon>
		<polymorphic_amplicon>ARTCGGAAATATCTGAAAAATGGATAATTCGAAAATTCAGATATTCAGAAAATGGGAAAGTCTGAAAAATTCTGAATCTGAAAATTCTAAGAATCTGAAAATTTGAGCAACCGGAAAAATTTTAAAAATCGGAAAATCTATAAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25589</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>97699</contig_pos>
        <strand></strand>
        <context>CAGCAGTTTT[T/C]AGGCTGTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTGGCAGATTTTCCGACGATTTTTCAGTTTTTCGATTTTCAGCAGTTTT</left_flank>
        <right_flank>AGGCTGTTTTTCGATGAATTTTGAGCAGATTTTCAGCAGTTTTCACTAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCAACATAGCGCCCCGAAATTCAACATTCTAGCAGAAATTTTTAAAGTTTATGAATTTAGAACACTTATTCAGAAAATCGAAAATCTGAAAAAAAACTACAATTCAAGCACAAAATTCAAACTTCGCGCCGAAAGTTTTCAGAGCGCGAAAAGCCGAAATTCAAATTTTCAGACTTGTCGCCTGAATTTTTCCCGATTTTCTCTAATTTTTTCCGGCGAAACTTGATTTTTTTGATCTACCAAAAACCAACCCGCGCGCAAAAATTAATTTTTCGATTTTCGAAAAAAATTTTCAGATGTAAACAACCCAGCTGCCAGTTTTCCGGGCAACTCCATTCATTTTTCCAGCTGCAATTCTTATTTTTTGTGAATAAAATTCGAATTTTTGGGATTTTTTCCGGATTTCAAGGGTTTTGAAATCATTTTTGCAGTCATAATTCATTGGTTTTTGGCAGATTTTCCGACGATTTTTCAGTTTTTCGATTTTCAGCAGTTTTTAGGCTGTTTTTCGATGAATTTTGAGCAGATTTTCAGCAGTTTTCACTAATTATTTCCGAAACATTTTTCAGATTTTTCGAAATTTTTTCTCCATTTTTCTCGAATTTCCCAGCAATTTTCAGCCAAAAATCCACCAATTGTTTTCAGAGTTTTTCTCCTCTCGACTTGTACTCGCACTCGTCTTCTCCTTCTCTCTCACCGAGATCGCCCTTCACGCATTCAGAAGCGTCAAGAATACTCACGCAACTAATCAGGTGGGTCACGTCTCGGATTAATTAATCCACGTGGCAATAATTGGAAAATCCACCTAAATAAGCCCTCATCAGCTGTCTCTTCTGGGTGAAAAATCTAGAAAAATCTGCGAAAAAAAATGTCGGCTGGAAATTCTGGAAATTTCCGAGACGACGCGATGAATGGTAGCAACCAAACCAACGGTGCCGATGGTTTTAACATTTTTGGGTGAGTTTTGAGCATTACTGTAGTCATCGTGGCGGGACCCA</canonical>
            <polymorphic>AACCAACATAGCGCCCCGAAATTCAACATTCTAGCAGAAATTTTTAAAGTTTATGAATTTAGAACACTTATTCAGAAAATCGAAAATCTGAAAAAAAACTACAATTCAAGCACAAAATTCAAACTTCGCGCCGAAAGTTTTCAGAGCGCGAAAAGCCGAAATTCAAATTTTCAGACTTGTCGCCTGAATTTTTCCCGATTTTCTCTAATTTTTTCCGGCGAAACTTGATTTTTTTGATCTACCAAAAACCAACCCGCGCGCAAAAATTAATTTTTCGATTTTCGAAAAAAATTTTCAGATGTAAACAACCCAGCTGCCAGTTTTCCGGGCAACTCCATTCATTTTTCCAGCTGCAATTCTTATTTTTTGTGAATAAAATTCGAATTTTTGGGATTTTTTCCGGATTTCAAGGGTTTTGAAATCATTTTTGCAGTCATAATTCATTGGTTTTTGGCAGATTTTCCGACGATTTTTCAGTTTTTCGATTTTCAGCAGTTTTYAGGCTGTTTTTCGATGAATTTTGAGCAGATTTTCAGCAGTTTTCACTAATTATTTCCGAAACATTTTTCAGATTTTTCGAAATTTTTTCTCCATTTTTCTCGAATTTCCCAGCAATTTTCAGCCAAAAATCCACCAATTGTTTTCAGAGTTTTTCTCCTCTCGACTTGTACTCGCACTCGTCTTCTCCTTCTCTCTCACCGAGATCGCCCTTCACGCATTCAGAAGCGTCAAGAATACTCACGCAACTAATCAGGTGGGTCACGTCTCGGATTAATTAATCCACGTGGCAATAATTGGAAAATCCACCTAAATAAGCCCTCATCAGCTGTCTCTTCTGGGTGAAAAATCTAGAAAAATCTGCGAAAAAAAATGTCGGCTGGAAATTCTGGAAATTTCCGAGACGACGCGATGAATGGTAGCAACCAAACCAACGGTGCCGATGGTTTTAACATTTTTGGGTGAGTTTTGAGCATTACTGTAGTCATCGTGGCGGGACCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCATTTTTGCAGTCATAATTC</pcr_primer_p1>
		<pcr_primer_p2>TACAAGTCGAGAGGAGAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATCATTTTTGCAGTCATAATTCATTGGTTTTTGGCAGATTTTCCGACGATTTTTCAGTTTTTCGATTTTCAGCAGTTTTTAGGCTGTTTTTCGATGAATTTTGAGCAGATTTTCAGCAGTTTTCACTAATTATTTCCGAAACATTTTTCAGATTTTTCGAAATTTTTTCTCCATTTTTCTCGAATTTCCCAGCAATTTTCAGCCAAAAATCCACCAATTGTTTTCAGAGTTTTTCTCCTCTCGACTTGTA</canonical_amplicon>
		<polymorphic_amplicon>AATCATTTTTGCAGTCATAATTCATTGGTTTTTGGCAGATTTTCCGACGATTTTTCAGTTTTTCGATTTTCAGCAGTTTTYAGGCTGTTTTTCGATGAATTTTGAGCAGATTTTCAGCAGTTTTCACTAATTATTTCCGAAACATTTTTCAGATTTTTCGAAATTTTTTCTCCATTTTTCTCGAATTTCCCAGCAATTTTCAGCCAAAAATCCACCAATTGTTTTCAGAGTTTTTCTCCTCTCGACTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25590</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>97710</contig_pos>
        <strand>+</strand>
        <context>AGGCTGTTTT[C/T]CGATGAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCGACGATTTTTCAGTTTTTCGATTTTCAGCAGTTTTTAGGCTGTTTT</left_flank>
        <right_flank>CGATGAATTTTGAGCAGATTTTCAGCAGTTTTCACTAATTATTTCCGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCCCCGAAATTCAACATTCTAGCAGAAATTTTTAAAGTTTATGAATTTAGAACACTTATTCAGAAAATCGAAAATCTGAAAAAAAACTACAATTCAAGCACAAAATTCAAACTTCGCGCCGAAAGTTTTCAGAGCGCGAAAAGCCGAAATTCAAATTTTCAGACTTGTCGCCTGAATTTTTCCCGATTTTCTCTAATTTTTTCCGGCGAAACTTGATTTTTTTGATCTACCAAAAACCAACCCGCGCGCAAAAATTAATTTTTCGATTTTCGAAAAAAATTTTCAGATGTAAACAACCCAGCTGCCAGTTTTCCGGGCAACTCCATTCATTTTTCCAGCTGCAATTCTTATTTTTTGTGAATAAAATTCGAATTTTTGGGATTTTTTCCGGATTTCAAGGGTTTTGAAATCATTTTTGCAGTCATAATTCATTGGTTTTTGGCAGATTTTCCGACGATTTTTCAGTTTTTCGATTTTCAGCAGTTTTTAGGCTGTTTTTCGATGAATTTTGAGCAGATTTTCAGCAGTTTTCACTAATTATTTCCGAAACATTTTTCAGATTTTTCGAAATTTTTTCTCCATTTTTCTCGAATTTCCCAGCAATTTTCAGCCAAAAATCCACCAATTGTTTTCAGAGTTTTTCTCCTCTCGACTTGTACTCGCACTCGTCTTCTCCTTCTCTCTCACCGAGATCGCCCTTCACGCATTCAGAAGCGTCAAGAATACTCACGCAACTAATCAGGTGGGTCACGTCTCGGATTAATTAATCCACGTGGCAATAATTGGAAAATCCACCTAAATAAGCCCTCATCAGCTGTCTCTTCTGGGTGAAAAATCTAGAAAAATCTGCGAAAAAAAATGTCGGCTGGAAATTCTGGAAATTTCCGAGACGACGCGATGAATGGTAGCAACCAAACCAACGGTGCCGATGGTTTTAACATTTTTGGGTGAGTTTTGAGCATTACTGTAGTCATCGTGGCGGGACCCAAGGGGAGGAAA</canonical>
            <polymorphic>CGCCCCGAAATTCAACATTCTAGCAGAAATTTTTAAAGTTTATGAATTTAGAACACTTATTCAGAAAATCGAAAATCTGAAAAAAAACTACAATTCAAGCACAAAATTCAAACTTCGCGCCGAAAGTTTTCAGAGCGCGAAAAGCCGAAATTCAAATTTTCAGACTTGTCGCCTGAATTTTTCCCGATTTTCTCTAATTTTTTCCGGCGAAACTTGATTTTTTTGATCTACCAAAAACCAACCCGCGCGCAAAAATTAATTTTTCGATTTTCGAAAAAAATTTTCAGATGTAAACAACCCAGCTGCCAGTTTTCCGGGCAACTCCATTCATTTTTCCAGCTGCAATTCTTATTTTTTGTGAATAAAATTCGAATTTTTGGGATTTTTTCCGGATTTCAAGGGTTTTGAAATCATTTTTGCAGTCATAATTCATTGGTTTTTGGCAGATTTTCCGACGATTTTTCAGTTTTTCGATTTTCAGCAGTTTTTAGGCTGTTTTYCGATGAATTTTGAGCAGATTTTCAGCAGTTTTCACTAATTATTTCCGAAACATTTTTCAGATTTTTCGAAATTTTTTCTCCATTTTTCTCGAATTTCCCAGCAATTTTCAGCCAAAAATCCACCAATTGTTTTCAGAGTTTTTCTCCTCTCGACTTGTACTCGCACTCGTCTTCTCCTTCTCTCTCACCGAGATCGCCCTTCACGCATTCAGAAGCGTCAAGAATACTCACGCAACTAATCAGGTGGGTCACGTCTCGGATTAATTAATCCACGTGGCAATAATTGGAAAATCCACCTAAATAAGCCCTCATCAGCTGTCTCTTCTGGGTGAAAAATCTAGAAAAATCTGCGAAAAAAAATGTCGGCTGGAAATTCTGGAAATTTCCGAGACGACGCGATGAATGGTAGCAACCAAACCAACGGTGCCGATGGTTTTAACATTTTTGGGTGAGTTTTGAGCATTACTGTAGTCATCGTGGCGGGACCCAAGGGGAGGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>349 195 102 98 70 66 61 29 23 7</canonical_bands>
                <polymorphic_bands>349 195 102 98 95 70 61 23 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCATTTTTGCAGTCATAATTC</pcr_primer_p1>
		<pcr_primer_p2>TACAAGTCGAGAGGAGAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATCATTTTTGCAGTCATAATTCATTGGTTTTTGGCAGATTTTCCGACGATTTTTCAGTTTTTCGATTTTCAGCAGTTTTTAGGCTGTTTTTCGATGAATTTTGAGCAGATTTTCAGCAGTTTTCACTAATTATTTCCGAAACATTTTTCAGATTTTTCGAAATTTTTTCTCCATTTTTCTCGAATTTCCCAGCAATTTTCAGCCAAAAATCCACCAATTGTTTTCAGAGTTTTTCTCCTCTCGACTTGTA</canonical_amplicon>
		<polymorphic_amplicon>AATCATTTTTGCAGTCATAATTCATTGGTTTTTGGCAGATTTTCCGACGATTTTTCAGTTTTTCGATTTTCAGCAGTTTTTAGGCTGTTTTYCGATGAATTTTGAGCAGATTTTCAGCAGTTTTCACTAATTATTTCCGAAACATTTTTCAGATTTTTCGAAATTTTTTCTCCATTTTTCTCGAATTTCCCAGCAATTTTCAGCCAAAAATCCACCAATTGTTTTCAGAGTTTTTCTCCTCTCGACTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25591</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>97877</contig_pos>
        <strand>+</strand>
        <context>GTACTCGCAC[A/T]CGTCTTCTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATCCACCAATTGTTTTCAGAGTTTTTCTCCTCTCGACTTGTACTCGCAC</left_flank>
        <right_flank>CGTCTTCTCCTTCTCTCTCACCGAGATCGCCCTTCACGCATTCAGAAGCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCGCCTGAATTTTTCCCGATTTTCTCTAATTTTTTCCGGCGAAACTTGATTTTTTTGATCTACCAAAAACCAACCCGCGCGCAAAAATTAATTTTTCGATTTTCGAAAAAAATTTTCAGATGTAAACAACCCAGCTGCCAGTTTTCCGGGCAACTCCATTCATTTTTCCAGCTGCAATTCTTATTTTTTGTGAATAAAATTCGAATTTTTGGGATTTTTTCCGGATTTCAAGGGTTTTGAAATCATTTTTGCAGTCATAATTCATTGGTTTTTGGCAGATTTTCCGACGATTTTTCAGTTTTTCGATTTTCAGCAGTTTTTAGGCTGTTTTTCGATGAATTTTGAGCAGATTTTCAGCAGTTTTCACTAATTATTTCCGAAACATTTTTCAGATTTTTCGAAATTTTTTCTCCATTTTTCTCGAATTTCCCAGCAATTTTCAGCCAAAAATCCACCAATTGTTTTCAGAGTTTTTCTCCTCTCGACTTGTACTCGCACTCGTCTTCTCCTTCTCTCTCACCGAGATCGCCCTTCACGCATTCAGAAGCGTCAAGAATACTCACGCAACTAATCAGGTGGGTCACGTCTCGGATTAATTAATCCACGTGGCAATAATTGGAAAATCCACCTAAATAAGCCCTCATCAGCTGTCTCTTCTGGGTGAAAAATCTAGAAAAATCTGCGAAAAAAAATGTCGGCTGGAAATTCTGGAAATTTCCGAGACGACGCGATGAATGGTAGCAACCAAACCAACGGTGCCGATGGTTTTAACATTTTTGGGTGAGTTTTGAGCATTACTGTAGTCATCGTGGCGGGACCCAAGGGGAGGAAAAGTGGCGCGAAACTTTTTTTTTCGATTTTTGGTAATTTTTAAAAATTCTTGCAAATTTCCGCTGACCCGAAAATCCATTTTTAGGCTGAAAACTAAAAATTCAGCTAATTATACTCTAAAAATCTCAAAAAAAAACGGGGAAAATCGATCAAAAGAGGTACTGTAAT</canonical>
            <polymorphic>GTCGCCTGAATTTTTCCCGATTTTCTCTAATTTTTTCCGGCGAAACTTGATTTTTTTGATCTACCAAAAACCAACCCGCGCGCAAAAATTAATTTTTCGATTTTCGAAAAAAATTTTCAGATGTAAACAACCCAGCTGCCAGTTTTCCGGGCAACTCCATTCATTTTTCCAGCTGCAATTCTTATTTTTTGTGAATAAAATTCGAATTTTTGGGATTTTTTCCGGATTTCAAGGGTTTTGAAATCATTTTTGCAGTCATAATTCATTGGTTTTTGGCAGATTTTCCGACGATTTTTCAGTTTTTCGATTTTCAGCAGTTTTTAGGCTGTTTTTCGATGAATTTTGAGCAGATTTTCAGCAGTTTTCACTAATTATTTCCGAAACATTTTTCAGATTTTTCGAAATTTTTTCTCCATTTTTCTCGAATTTCCCAGCAATTTTCAGCCAAAAATCCACCAATTGTTTTCAGAGTTTTTCTCCTCTCGACTTGTACTCGCACWCGTCTTCTCCTTCTCTCTCACCGAGATCGCCCTTCACGCATTCAGAAGCGTCAAGAATACTCACGCAACTAATCAGGTGGGTCACGTCTCGGATTAATTAATCCACGTGGCAATAATTGGAAAATCCACCTAAATAAGCCCTCATCAGCTGTCTCTTCTGGGTGAAAAATCTAGAAAAATCTGCGAAAAAAAATGTCGGCTGGAAATTCTGGAAATTTCCGAGACGACGCGATGAATGGTAGCAACCAAACCAACGGTGCCGATGGTTTTAACATTTTTGGGTGAGTTTTGAGCATTACTGTAGTCATCGTGGCGGGACCCAAGGGGAGGAAAAGTGGCGCGAAACTTTTTTTTTCGATTTTTGGTAATTTTTAAAAATTCTTGCAAATTTCCGCTGACCCGAAAATCCATTTTTAGGCTGAAAACTAAAAATTCAGCTAATTATACTCTAAAAATCTCAAAAAAAAACGGGGAAAATCGATCAAAAGAGGTACTGTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGAATTTTGAGCAGATTTTC</pcr_primer_p1>
		<pcr_primer_p2>TGATTAGTTGCGTGAGTATTCTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GATGAATTTTGAGCAGATTTTCAGCAGTTTTCACTAATTATTTCCGAAACATTTTTCAGATTTTTCGAAATTTTTTCTCCATTTTTCTCGAATTTCCCAGCAATTTTCAGCCAAAAATCCACCAATTGTTTTCAGAGTTTTTCTCCTCTCGACTTGTACTCGCACTCGTCTTCTCCTTCTCTCTCACCGAGATCGCCCTTCACGCATTCAGAAGCGTCAAGAATACTCACGCAACTAATCA</canonical_amplicon>
		<polymorphic_amplicon>GATGAATTTTGAGCAGATTTTCAGCAGTTTTCACTAATTATTTCCGAAACATTTTTCAGATTTTTCGAAATTTTTTCTCCATTTTTCTCGAATTTCCCAGCAATTTTCAGCCAAAAATCCACCAATTGTTTTCAGAGTTTTTCTCCTCTCGACTTGTACTCGCACWCGTCTTCTCCTTCTCTCTCACCGAGATCGCCCTTCACGCATTCAGAAGCGTCAAGAATACTCACGCAACTAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25592</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>97981</contig_pos>
        <strand>+</strand>
        <context>TTAATTAATC[C/T]ACGTGGCAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAATACTCACGCAACTAATCAGGTGGGTCACGTCTCGGATTAATTAATC</left_flank>
        <right_flank>ACGTGGCAATAATTGGAAAATCCACCTAAATAAGCCCTCATCAGCTGTCT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAAAAAAATTTTCAGATGTAAACAACCCAGCTGCCAGTTTTCCGGGCAACTCCATTCATTTTTCCAGCTGCAATTCTTATTTTTTGTGAATAAAATTCGAATTTTTGGGATTTTTTCCGGATTTCAAGGGTTTTGAAATCATTTTTGCAGTCATAATTCATTGGTTTTTGGCAGATTTTCCGACGATTTTTCAGTTTTTCGATTTTCAGCAGTTTTTAGGCTGTTTTTCGATGAATTTTGAGCAGATTTTCAGCAGTTTTCACTAATTATTTCCGAAACATTTTTCAGATTTTTCGAAATTTTTTCTCCATTTTTCTCGAATTTCCCAGCAATTTTCAGCCAAAAATCCACCAATTGTTTTCAGAGTTTTTCTCCTCTCGACTTGTACTCGCACTCGTCTTCTCCTTCTCTCTCACCGAGATCGCCCTTCACGCATTCAGAAGCGTCAAGAATACTCACGCAACTAATCAGGTGGGTCACGTCTCGGATTAATTAATCCACGTGGCAATAATTGGAAAATCCACCTAAATAAGCCCTCATCAGCTGTCTCTTCTGGGTGAAAAATCTAGAAAAATCTGCGAAAAAAAATGTCGGCTGGAAATTCTGGAAATTTCCGAGACGACGCGATGAATGGTAGCAACCAAACCAACGGTGCCGATGGTTTTAACATTTTTGGGTGAGTTTTGAGCATTACTGTAGTCATCGTGGCGGGACCCAAGGGGAGGAAAAGTGGCGCGAAACTTTTTTTTTCGATTTTTGGTAATTTTTAAAAATTCTTGCAAATTTCCGCTGACCCGAAAATCCATTTTTAGGCTGAAAACTAAAAATTCAGCTAATTATACTCTAAAAATCTCAAAAAAAAACGGGGAAAATCGATCAAAAGAGGTACTGTAATCGTGGCGGGAGCAAATTTGAATTTTAAGTGTTTTTATCGATTTTTTGAGTTTTCAGACACTTTTTTGGTTATTTTAAGGCTATTTTCTCGGATTTTCGGCGGTT</canonical>
            <polymorphic>CGAAAAAAATTTTCAGATGTAAACAACCCAGCTGCCAGTTTTCCGGGCAACTCCATTCATTTTTCCAGCTGCAATTCTTATTTTTTGTGAATAAAATTCGAATTTTTGGGATTTTTTCCGGATTTCAAGGGTTTTGAAATCATTTTTGCAGTCATAATTCATTGGTTTTTGGCAGATTTTCCGACGATTTTTCAGTTTTTCGATTTTCAGCAGTTTTTAGGCTGTTTTTCGATGAATTTTGAGCAGATTTTCAGCAGTTTTCACTAATTATTTCCGAAACATTTTTCAGATTTTTCGAAATTTTTTCTCCATTTTTCTCGAATTTCCCAGCAATTTTCAGCCAAAAATCCACCAATTGTTTTCAGAGTTTTTCTCCTCTCGACTTGTACTCGCACTCGTCTTCTCCTTCTCTCTCACCGAGATCGCCCTTCACGCATTCAGAAGCGTCAAGAATACTCACGCAACTAATCAGGTGGGTCACGTCTCGGATTAATTAATCYACGTGGCAATAATTGGAAAATCCACCTAAATAAGCCCTCATCAGCTGTCTCTTCTGGGTGAAAAATCTAGAAAAATCTGCGAAAAAAAATGTCGGCTGGAAATTCTGGAAATTTCCGAGACGACGCGATGAATGGTAGCAACCAAACCAACGGTGCCGATGGTTTTAACATTTTTGGGTGAGTTTTGAGCATTACTGTAGTCATCGTGGCGGGACCCAAGGGGAGGAAAAGTGGCGCGAAACTTTTTTTTTCGATTTTTGGTAATTTTTAAAAATTCTTGCAAATTTCCGCTGACCCGAAAATCCATTTTTAGGCTGAAAACTAAAAATTCAGCTAATTATACTCTAAAAATCTCAAAAAAAAACGGGGAAAATCGATCAAAAGAGGTACTGTAATCGTGGCGGGAGCAAATTTGAATTTTAAGTGTTTTTATCGATTTTTTGAGTTTTCAGACACTTTTTTGGTTATTTTAAGGCTATTTTCTCGGATTTTCGGCGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACGTG</site>
                <isoschizomers>
                    <enzyme>AcvI</enzyme>
                    <enzyme>BbrPI</enzyme>
                    <enzyme>Eco72I</enzyme>
                    <enzyme>PmaCI</enzyme>
                    <enzyme>PmlI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>174 167 95 89 88 45 43 36 29 28 27 26 25 25 22 21 19 16 16 5 4</canonical_bands>
                <polymorphic_bands>174 167 95 89 88 45 43 36 29 28 27 26 25 25 25 22 19 16 16 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAGAATACTCACGCAACTAAT</pcr_primer_p1>
		<pcr_primer_p2>TACAGTAATGCTCAAAACTCACC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TCAAGAATACTCACGCAACTAATCAGGTGGGTCACGTCTCGGATTAATTAATCCACGTGGCAATAATTGGAAAATCCACCTAAATAAGCCCTCATCAGCTGTCTCTTCTGGGTGAAAAATCTAGAAAAATCTGCGAAAAAAAATGTCGGCTGGAAATTCTGGAAATTTCCGAGACGACGCGATGAATGGTAGCAACCAAACCAACGGTGCCGATGGTTTTAACATTTTTGGGTGAGTTTTGAGCATTACTGTA</canonical_amplicon>
		<polymorphic_amplicon>TCAAGAATACTCACGCAACTAATCAGGTGGGTCACGTCTCGGATTAATTAATCYACGTGGCAATAATTGGAAAATCCACCTAAATAAGCCCTCATCAGCTGTCTCTTCTGGGTGAAAAATCTAGAAAAATCTGCGAAAAAAAATGTCGGCTGGAAATTCTGGAAATTTCCGAGACGACGCGATGAATGGTAGCAACCAAACCAACGGTGCCGATGGTTTTAACATTTTTGGGTGAGTTTTGAGCATTACTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25593</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>147607</contig_pos>
        <strand></strand>
        <context>aggcatgttt[T/C]ctcattttga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTTCAAGAATTTCGAAAATTTTCGAATTTTCACCCATATAGGCATGTTT</left_flank>
        <right_flank>CTCATTTTGAAGCGCAAGACGCGTGGATTTTGAAAATCAATATTTTAGAC</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCATCCGTCTCATCTCCGCATCGCTCGTCGGTTCGATTCGAATCGCTTCTCGTTTCAATTCCGCCGAATTCGTAATTCTCGGGAATTCGTGTCCATTTTCTATAGATCTTCCCTGTTTTTCCAGCTTTTTCGGTGCTCGAATTTTCAGATTTTTCACGAAAAAATCAATATTTTCAGCATTTTCAGCCAAAAACTGTTCGGGATTATCGATGAAATCGGCGCCCAACTGATTTCTCATCATTTGGCTCGCAATTGAATAGTTGTTGTCTTCTAGCCATTTTGCAATGATGCTATGAGCAATGCATTCTGAAAAAATTTTTGAAAAAAAAAACGTTTTTTTAATCATAAATTCTATCATAACTTTTTTATTCTTTTTCAAATGATTTGAAATCTTGATTTTCAGACTCAGCGCATTTTTGCGGTTCGAATGAGTATAATCATGAACTAATTTCAAGAATTTCGAAAATTTTCGAATTTTCACCCATATAGGCATGTTTTCTCATTTTGAAGCGCAAGACGCGTGGATTTTGAAAATCAATATTTTAGACTCCGCCCACCTCGATCCGTCAAGTTATCCTTCTGATCAGTTTGGTGTTTGGTGTTGTTGAGGGTCGCGTCGATGGTTGCACGAATATGAGCCTTTAAAAAAAATCGAACATTCGGGGAACTTAAAATTCAGAAATTCAAATTTCCAAAAAATATCTGAAATATTCAGAATTTTCTGAAATTTTCGAAAAAATTCAAAATTCCTAAACGTTTCTGACTCTTTCTGGCGCTTCTGGGTGGTTTTGGACAGCGAGCGGAGGCTCTGAAATCATCCAGATGTAGAACCATCTAGAAGAATCTAGAAGCATCTACACAGGGTAACGGCTGCGCATGGTATATGCGTTGGCGCGGCGCCTCATATGGACGACATAGGTACACCGTTTGCGCGCACGCGCCATCGAGATCGGGCATGACGCGTCCATATTTCATCTACAATTTCAGGTCGTATTGGC</canonical>
            <polymorphic>TCTCATCCGTCTCATCTCCGCATCGCTCGTCGGTTCGATTCGAATCGCTTCTCGTTTCAATTCCGCCGAATTCGTAATTCTCGGGAATTCGTGTCCATTTTCTATAGATCTTCCCTGTTTTTCCAGCTTTTTCGGTGCTCGAATTTTCAGATTTTTCACGAAAAAATCAATATTTTCAGCATTTTCAGCCAAAAACTGTTCGGGATTATCGATGAAATCGGCGCCCAACTGATTTCTCATCATTTGGCTCGCAATTGAATAGTTGTTGTCTTCTAGCCATTTTGCAATGATGCTATGAGCAATGCATTCTGAAAAAATTTTTGAAAAAAAAAACGTTTTTTTAATCATAAATTCTATCATAACTTTTTTATTCTTTTTCAAATGATTTGAAATCTTGATTTTCAGACTCAGCGCATTTTTGCGGTTCGAATGAGTATAATCATGAACTAATTTCAAGAATTTCGAAAATTTTCGAATTTTCACCCATATAGGCATGTTTYCTCATTTTGAAGCGCAAGACGCGTGGATTTTGAAAATCAATATTTTAGACTCCGCCCACCTCGATCCGTCAAGTTATCCTTCTGATCAGTTTGGTGTTTGGTGTTGTTGAGGGTCGCGTCGATGGTTGCACGAATATGAGCCTTTAAAAAAAATCGAACATTCGGGGAACTTAAAATTCAGAAATTCAAATTTCCAAAAAATATCTGAAATATTCAGAATTTTCTGAAATTTTCGAAAAAATTCAAAATTCCTAAACGTTTCTGACTCTTTCTGGCGCTTCTGGGTGGTTTTGGACAGCGAGCGGAGGCTCTGAAATCATCCAGATGTAGAACCATCTAGAAGAATCTAGAAGCATCTACACAGGGTAACGGCTGCGCATGGTATATGCGTTGGCGCGGCGCCTCATATGGACGACATAGGTACACCGTTTGCGCGCACGCGCCATCGAGATCGGGCATGACGCGTCCATATTTCATCTACAATTTCAGGTCGTATTGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGCAATGATGCTATGAG</pcr_primer_p1>
		<pcr_primer_p2>GGCGGAGTCTAAAATATTGAT</pcr_primer_p2>
		<pcr_amplicon_size>278</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGCAATGATGCTATGAGCAATGCATTCTGAAAAAATTTTTGAAAAAAAAAACGTTTTTTTAATCATAAATTCTATCATAACTTTTTTATTCTTTTTCAAATGATTTGAAATCTTGATTTTCAGACTCAGCGCATTTTTGCGGTTCGAATGAGTATAATCATGAACTAATTTCAAGAATTTCGAAAATTTTCGAATTTTCACCCATATAGGCATGTTTTCTCATTTTGAAGCGCAAGACGCGTGGATTTTGAAAATCAATATTTTAGACTCCGCC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGCAATGATGCTATGAGCAATGCATTCTGAAAAAATTTTTGAAAAAAAAAACGTTTTTTTAATCATAAATTCTATCATAACTTTTTTATTCTTTTTCAAATGATTTGAAATCTTGATTTTCAGACTCAGCGCATTTTTGCGGTTCGAATGAGTATAATCATGAACTAATTTCAAGAATTTCGAAAATTTTCGAATTTTCACCCATATAGGCATGTTTYCTCATTTTGAAGCGCAAGACGCGTGGATTTTGAAAATCAATATTTTAGACTCCGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25594</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>147894</contig_pos>
        <strand>+</strand>
        <context>GCTTCTGGGT[C/G]GTTTTGGACA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAAATTCAAAATTCCTAAACGTTTCTGACTCTTTCTGGCGCTTCTGGGT</left_flank>
        <right_flank>GTTTTGGACAGCGAGCGGAGGCTCTGAAATCATCCAGATGTAGAACCATC</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATGCTATGAGCAATGCATTCTGAAAAAATTTTTGAAAAAAAAAACGTTTTTTTAATCATAAATTCTATCATAACTTTTTTATTCTTTTTCAAATGATTTGAAATCTTGATTTTCAGACTCAGCGCATTTTTGCGGTTCGAATGAGTATAATCATGAACTAATTTCAAGAATTTCGAAAATTTTCGAATTTTCACCCATATAGGCATGTTTTCTCATTTTGAAGCGCAAGACGCGTGGATTTTGAAAATCAATATTTTAGACTCCGCCCACCTCGATCCGTCAAGTTATCCTTCTGATCAGTTTGGTGTTTGGTGTTGTTGAGGGTCGCGTCGATGGTTGCACGAATATGAGCCTTTAAAAAAAATCGAACATTCGGGGAACTTAAAATTCAGAAATTCAAATTTCCAAAAAATATCTGAAATATTCAGAATTTTCTGAAATTTTCGAAAAAATTCAAAATTCCTAAACGTTTCTGACTCTTTCTGGCGCTTCTGGGTGGTTTTGGACAGCGAGCGGAGGCTCTGAAATCATCCAGATGTAGAACCATCTAGAAGAATCTAGAAGCATCTACACAGGGTAACGGCTGCGCATGGTATATGCGTTGGCGCGGCGCCTCATATGGACGACATAGGTACACCGTTTGCGCGCACGCGCCATCGAGATCGGGCATGACGCGTCCATATTTCATCTACAATTTCAGGTCGTATTGGCGATGGATATCTCTTATATGGATTAATTCATCTAACTATAGTTGTAATAAGATGTGATGTTGTTCAGATCTTCCAATATCGTTCATTTTCCCTTTCAGATTTTACAGAGCACGCTCTCCCCAGCTCTCAATATGAACTGCAAGTCGTTTTCTCAGCGGAGCGCGGTTGCGCGCGGCGAAAATTTATGTTTTTTAAATTTTGTACTGAAAAACCGGTTTTTATCAAAATTTTCTTATTTTTCGCCATTTTTTTTTCAATTTTTCGTCCATAGGAATTGTTAAACCGGCT</canonical>
            <polymorphic>TGATGCTATGAGCAATGCATTCTGAAAAAATTTTTGAAAAAAAAAACGTTTTTTTAATCATAAATTCTATCATAACTTTTTTATTCTTTTTCAAATGATTTGAAATCTTGATTTTCAGACTCAGCGCATTTTTGCGGTTCGAATGAGTATAATCATGAACTAATTTCAAGAATTTCGAAAATTTTCGAATTTTCACCCATATAGGCATGTTTTCTCATTTTGAAGCGCAAGACGCGTGGATTTTGAAAATCAATATTTTAGACTCCGCCCACCTCGATCCGTCAAGTTATCCTTCTGATCAGTTTGGTGTTTGGTGTTGTTGAGGGTCGCGTCGATGGTTGCACGAATATGAGCCTTTAAAAAAAATCGAACATTCGGGGAACTTAAAATTCAGAAATTCAAATTTCCAAAAAATATCTGAAATATTCAGAATTTTCTGAAATTTTCGAAAAAATTCAAAATTCCTAAACGTTTCTGACTCTTTCTGGCGCTTCTGGGTSGTTTTGGACAGCGAGCGGAGGCTCTGAAATCATCCAGATGTAGAACCATCTAGAAGAATCTAGAAGCATCTACACAGGGTAACGGCTGCGCATGGTATATGCGTTGGCGCGGCGCCTCATATGGACGACATAGGTACACCGTTTGCGCGCACGCGCCATCGAGATCGGGCATGACGCGTCCATATTTCATCTACAATTTCAGGTCGTATTGGCGATGGATATCTCTTATATGGATTAATTCATCTAACTATAGTTGTAATAAGATGTGATGTTGTTCAGATCTTCCAATATCGTTCATTTTCCCTTTCAGATTTTACAGAGCACGCTCTCCCCAGCTCTCAATATGAACTGCAAGTCGTTTTCTCAGCGGAGCGCGGTTGCGCGCGGCGAAAATTTATGTTTTTTAAATTTTGTACTGAAAAACCGGTTTTTATCAAAATTTTCTTATTTTTCGCCATTTTTTTTTCAATTTTTCGTCCATAGGAATTGTTAAACCGGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>195 177 157 117 74 64 55 43 38 33 27 13 7</canonical_bands>
                <polymorphic_bands>231 195 177 117 64 55 43 38 33 27 13 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTGGTGTTTGGTGTTGTT</pcr_primer_p1>
		<pcr_primer_p2>TTCTTCTAGATGGTTCTACATCTG</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>GTTTGGTGTTTGGTGTTGTTGAGGGTCGCGTCGATGGTTGCACGAATATGAGCCTTTAAAAAAAATCGAACATTCGGGGAACTTAAAATTCAGAAATTCAAATTTCCAAAAAATATCTGAAATATTCAGAATTTTCTGAAATTTTCGAAAAAATTCAAAATTCCTAAACGTTTCTGACTCTTTCTGGCGCTTCTGGGTGGTTTTGGACAGCGAGCGGAGGCTCTGAAATCATCCAGATGTAGAACCATCTAGAAGAA</canonical_amplicon>
		<polymorphic_amplicon>GTTTGGTGTTTGGTGTTGTTGAGGGTCGCGTCGATGGTTGCACGAATATGAGCCTTTAAAAAAAATCGAACATTCGGGGAACTTAAAATTCAGAAATTCAAATTTCCAAAAAATATCTGAAATATTCAGAATTTTCTGAAATTTTCGAAAAAATTCAAAATTCCTAAACGTTTCTGACTCTTTCTGGCGCTTCTGGGTSGTTTTGGACAGCGAGCGGAGGCTCTGAAATCATCCAGATGTAGAACCATCTAGAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25595</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>149277</contig_pos>
        <strand></strand>
        <context>ACCTTGAAAA[A/T]AATTCAACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATAACATAATAAATTTTTCCTTCAAAATTGCGATATAGAAACCTTGAAAA</left_flank>
        <right_flank>AATTCAACAAAGTCTAGAAATTGGCATTAATTCGCATAATTTTGTTTTCG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGAAGTCTGGGATTTCCGATTTTAGTAACTGCAAATTTTCAAAAAATACCAAAACATTGATTACCGTAAAACCTGTATTAGAAGGGCCCTCTAATAGAAGGGTCCTCCGAGAGGGGCTCGGAAAAATAGAAGGCCCCCCTGTAATAAAAGGACCCCCGTAATAGAAGGGCCCTCCCTGTCGGGGGTACCAAGCGAGAGGAAACGCGTCTTTTTATCACAGTAAGAAAGTCGCGCCGCTCGCGTGGCCTAGGGGTCTCACTGAAAATCCTCGTCCCTCGGCGGCACCTTTTTTTGAATTTTTTTTTCCTTTTCAACGGCGTTTTTTGGGGATTTCGGATTTTTTTCGAATTTTTTCGCAATAATATTCTGAAAATAGATAAATTTTAACACATTTTGATGCAATAAAAATTTTTGTTCGGAGTCCCCCTTTAAAAATATCTGGATGATATAACATAATAAATTTTTCCTTCAAAATTGCGATATAGAAACCTTGAAAAAAATTCAACAAAGTCTAGAAATTGGCATTAATTCGCATAATTTTGTTTTCGAAATAATTTTGTTTCTCGGATTTTTTTCTACTTTTACTTCGTAATAATCGGAAAACTTACCAATCAACCTGTATTTCACCTGAAAAATATATTATTCCGCTTATTCCGAAGTAAAACAGAAAAGTGCTAATTTCAAGAAAAACCGGATTTTGTAAAAAATTTTACCTATTTCTTTACTAAAAATAAGTTTTATTTTCGTTAGTCATAACTTTTACATGTGAAAACAGTGAGAAGTTCTTTGAAAGCAGGAAATATGATCAATATGATCGAAAAATTGATCAAGGTCGGCGGTGAAAAATTTTGCTAAAAAACGCGCACTAGCGTAATAGCGGAGTGTCGTTGGTGGGTGGTCGTTTTCATGCGAAAAGAAAAGCGTGCATGCTATATGGATGCTATATGGGTGCGCCCACCGGCGACCAGTCGTGCCCAGCGACGACGCATATAGCGCGC</canonical>
            <polymorphic>TGTGAAGTCTGGGATTTCCGATTTTAGTAACTGCAAATTTTCAAAAAATACCAAAACATTGATTACCGTAAAACCTGTATTAGAAGGGCCCTCTAATAGAAGGGTCCTCCGAGAGGGGCTCGGAAAAATAGAAGGCCCCCCTGTAATAAAAGGACCCCCGTAATAGAAGGGCCCTCCCTGTCGGGGGTACCAAGCGAGAGGAAACGCGTCTTTTTATCACAGTAAGAAAGTCGCGCCGCTCGCGTGGCCTAGGGGTCTCACTGAAAATCCTCGTCCCTCGGCGGCACCTTTTTTTGAATTTTTTTTTCCTTTTCAACGGCGTTTTTTGGGGATTTCGGATTTTTTTCGAATTTTTTCGCAATAATATTCTGAAAATAGATAAATTTTAACACATTTTGATGCAATAAAAATTTTTGTTCGGAGTCCCCCTTTAAAAATATCTGGATGATATAACATAATAAATTTTTCCTTCAAAATTGCGATATAGAAACCTTGAAAAWAATTCAACAAAGTCTAGAAATTGGCATTAATTCGCATAATTTTGTTTTCGAAATAATTTTGTTTCTCGGATTTTTTTCTACTTTTACTTCGTAATAATCGGAAAACTTACCAATCAACCTGTATTTCACCTGAAAAATATATTATTCCGCTTATTCCGAAGTAAAACAGAAAAGTGCTAATTTCAAGAAAAACCGGATTTTGTAAAAAATTTTACCTATTTCTTTACTAAAAATAAGTTTTATTTTCGTTAGTCATAACTTTTACATGTGAAAACAGTGAGAAGTTCTTTGAAAGCAGGAAATATGATCAATATGATCGAAAAATTGATCAAGGTCGGCGGTGAAAAATTTTGCTAAAAAACGCGCACTAGCGTAATAGCGGAGTGTCGTTGGTGGGTGGTCGTTTTCATGCGAAAAGAAAAGCGTGCATGCTATATGGATGCTATATGGGTGCGCCCACCGGCGACCAGTCGTGCCCAGCGACGACGCATATAGCGCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>261 207 154 139 52 52 40 35 33 27</canonical_bands>
                <polymorphic_bands>261 247 154 139 52 52 35 33 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGTCTCACTGAAAATCCTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATCCGAGAAACAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>GGGTCTCACTGAAAATCCTCGTCCCTCGGCGGCACCTTTTTTTGAATTTTTTTTTCCTTTTCAACGGCGTTTTTTGGGGATTTCGGATTTTTTTCGAATTTTTTCGCAATAATATTCTGAAAATAGATAAATTTTAACACATTTTGATGCAATAAAAATTTTTGTTCGGAGTCCCCCTTTAAAAATATCTGGATGATATAACATAATAAATTTTTCCTTCAAAATTGCGATATAGAAACCTTGAAAAAAATTCAACAAAGTCTAGAAATTGGCATTAATTCGCATAATTTTGTTTTCGAAATAATTTTGTTTCTCGGATTTTT</canonical_amplicon>
		<polymorphic_amplicon>GGGTCTCACTGAAAATCCTCGTCCCTCGGCGGCACCTTTTTTTGAATTTTTTTTTCCTTTTCAACGGCGTTTTTTGGGGATTTCGGATTTTTTTCGAATTTTTTCGCAATAATATTCTGAAAATAGATAAATTTTAACACATTTTGATGCAATAAAAATTTTTGTTCGGAGTCCCCCTTTAAAAATATCTGGATGATATAACATAATAAATTTTTCCTTCAAAATTGCGATATAGAAACCTTGAAAAWAATTCAACAAAGTCTAGAAATTGGCATTAATTCGCATAATTTTGTTTTCGAAATAATTTTGTTTCTCGGATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25596</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>149505</contig_pos>
        <strand></strand>
        <context>ATTTCTTTAC[T/A]AAAAATAAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TAATTTCAAGAAAAACCGGATTTTGTAAAAAATTTTACCTATTTCTTTAC</left_flank>
        <right_flank>AAAAATAAGTTTTATTTTCGTTAGTCATAACTTTTACATGTGAAAACAGT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCGCGCCGCTCGCGTGGCCTAGGGGTCTCACTGAAAATCCTCGTCCCTCGGCGGCACCTTTTTTTGAATTTTTTTTTCCTTTTCAACGGCGTTTTTTGGGGATTTCGGATTTTTTTCGAATTTTTTCGCAATAATATTCTGAAAATAGATAAATTTTAACACATTTTGATGCAATAAAAATTTTTGTTCGGAGTCCCCCTTTAAAAATATCTGGATGATATAACATAATAAATTTTTCCTTCAAAATTGCGATATAGAAACCTTGAAAAAAATTCAACAAAGTCTAGAAATTGGCATTAATTCGCATAATTTTGTTTTCGAAATAATTTTGTTTCTCGGATTTTTTTCTACTTTTACTTCGTAATAATCGGAAAACTTACCAATCAACCTGTATTTCACCTGAAAAATATATTATTCCGCTTATTCCGAAGTAAAACAGAAAAGTGCTAATTTCAAGAAAAACCGGATTTTGTAAAAAATTTTACCTATTTCTTTACTAAAAATAAGTTTTATTTTCGTTAGTCATAACTTTTACATGTGAAAACAGTGAGAAGTTCTTTGAAAGCAGGAAATATGATCAATATGATCGAAAAATTGATCAAGGTCGGCGGTGAAAAATTTTGCTAAAAAACGCGCACTAGCGTAATAGCGGAGTGTCGTTGGTGGGTGGTCGTTTTCATGCGAAAAGAAAAGCGTGCATGCTATATGGATGCTATATGGGTGCGCCCACCGGCGACCAGTCGTGCCCAGCGACGACGCATATAGCGCGCACGCGCTACCCACAGAATTATTATGGGTGCACATAGCATCCTATATGCGCGCCTAGACATATACCATGCGCAGCCGTTACCCTGTGTAGAAGCATTTGGAAGCATCTAGAAGCATCTAAACGCATCTATACGCCTCCAAAAACGTCTAGAACCATCTAGAAGCATCAGGAAGCACCTTGAAGCTTCTAGAAGCATCAGCATCTAAAAGCACCTAAAAGCATCTGGAAG</canonical>
            <polymorphic>AGTCGCGCCGCTCGCGTGGCCTAGGGGTCTCACTGAAAATCCTCGTCCCTCGGCGGCACCTTTTTTTGAATTTTTTTTTCCTTTTCAACGGCGTTTTTTGGGGATTTCGGATTTTTTTCGAATTTTTTCGCAATAATATTCTGAAAATAGATAAATTTTAACACATTTTGATGCAATAAAAATTTTTGTTCGGAGTCCCCCTTTAAAAATATCTGGATGATATAACATAATAAATTTTTCCTTCAAAATTGCGATATAGAAACCTTGAAAAAAATTCAACAAAGTCTAGAAATTGGCATTAATTCGCATAATTTTGTTTTCGAAATAATTTTGTTTCTCGGATTTTTTTCTACTTTTACTTCGTAATAATCGGAAAACTTACCAATCAACCTGTATTTCACCTGAAAAATATATTATTCCGCTTATTCCGAAGTAAAACAGAAAAGTGCTAATTTCAAGAAAAACCGGATTTTGTAAAAAATTTTACCTATTTCTTTACWAAAAATAAGTTTTATTTTCGTTAGTCATAACTTTTACATGTGAAAACAGTGAGAAGTTCTTTGAAAGCAGGAAATATGATCAATATGATCGAAAAATTGATCAAGGTCGGCGGTGAAAAATTTTGCTAAAAAACGCGCACTAGCGTAATAGCGGAGTGTCGTTGGTGGGTGGTCGTTTTCATGCGAAAAGAAAAGCGTGCATGCTATATGGATGCTATATGGGTGCGCCCACCGGCGACCAGTCGTGCCCAGCGACGACGCATATAGCGCGCACGCGCTACCCACAGAATTATTATGGGTGCACATAGCATCCTATATGCGCGCCTAGACATATACCATGCGCAGCCGTTACCCTGTGTAGAAGCATTTGGAAGCATCTAGAAGCATCTAAACGCATCTATACGCCTCCAAAAACGTCTAGAACCATCTAGAAGCATCAGGAAGCACCTTGAAGCTTCTAGAAGCATCAGCATCTAAAAGCACCTAAAAGCATCTGGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATAATTTTGTTTCTCGGATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAAGAACTTCTCACTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAATAATTTTGTTTCTCGGATTTTTTTCTACTTTTACTTCGTAATAATCGGAAAACTTACCAATCAACCTGTATTTCACCTGAAAAATATATTATTCCGCTTATTCCGAAGTAAAACAGAAAAGTGCTAATTTCAAGAAAAACCGGATTTTGTAAAAAATTTTACCTATTTCTTTACTAAAAATAAGTTTTATTTTCGTTAGTCATAACTTTTACATGTGAAAACAGTGAGAAGTTCTTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>AAATAATTTTGTTTCTCGGATTTTTTTCTACTTTTACTTCGTAATAATCGGAAAACTTACCAATCAACCTGTATTTCACCTGAAAAATATATTATTCCGCTTATTCCGAAGTAAAACAGAAAAGTGCTAATTTCAAGAAAAACCGGATTTTGTAAAAAATTTTACCTATTTCTTTACWAAAAATAAGTTTTATTTTCGTTAGTCATAACTTTTACATGTGAAAACAGTGAGAAGTTCTTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25597</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>164302</contig_pos>
        <strand></strand>
        <context>ACCGGTTACG[C/T]GGTGGGCGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTAGTAACCGAGATAATTTAATTCAAAGTGATCACCTCCACCGGTTACG</left_flank>
        <right_flank>GGTGGGCGCTACTGTCCGAGCCAATTCTATACTTTGAGCCTATATATGTG</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAAAGGGATCAACAGACTTCCTAGTCTGGCTAATCAGTACACTATTGATATACTTGATATTTTTTGTTATTTTGAATTTTCAATGTTTTTTGATTTTCCGAATTTTGTAATTCTTGAAAATTCAGAAATTCGGAATTTTCTGAATTTCGGAATTCCTAGAATTTCAGAATTTTTGAATCTTTAAATTTCCCAAATTTCTCCAATTTTCGATTTCCTCATTTTTTTCAGAATTTTCTTCTGGTTTTTTTTCACTTTAATGTTATCACCAACATTTTCACAGTTCCCACTTTTCTGATATCTCTTAGAAATTGAGATAATTGATCTCGTTACCTGGTGGGCAGCCAATTCTATACCATCACTTTGAGCCAATTTATCTTAGTTTCTACTGATAAAATGTTTATCATAATATCACCAACATTTTATTCGTTTACCACTTTTTGATATCTTTTGTAGTAACCGAGATAATTTAATTCAAAGTGATCACCTCCACCGGTTACGCGGTGGGCGCTACTGTCCGAGCCAATTCTATACTTTGAGCCTATATATGTGGATTTCTGTGAATGATATCAAAAACTTGTCAACTAATAAAACACTTATCATACTATTTCCCACATTTTTTCAGTTTGTATGTTTTCGATACCTCTTATAGGAACCAAAATAATTCAGGGCAAAGTACAAGTATGGTGGTGGCGCAGCCAACGGCGCCGACCGCGCCGACATTAGAGACAAAGTGTTTTGAGCTCGATTATCTGAGTTCCTGCAAGAGATATCAAAAAGTGGTCAACTAATAAAACATTTATCATGATATCACAATAATTTTGATAGTTAACCATTGCTTGATATCTGTAACAAGAATCGAGCTATTTGAGCTCAAAGTGTAGGGATGGTGATGGTGCCGACCAAAAGCTTTGCGTGATTTGAGCTCATTTATCTCAATTACTATAAGTGATATTAAATAGCCGTCAACTGATAAAATGTTTATCATATTTTGACCAACAT</canonical>
            <polymorphic>CGAAAGGGATCAACAGACTTCCTAGTCTGGCTAATCAGTACACTATTGATATACTTGATATTTTTTGTTATTTTGAATTTTCAATGTTTTTTGATTTTCCGAATTTTGTAATTCTTGAAAATTCAGAAATTCGGAATTTTCTGAATTTCGGAATTCCTAGAATTTCAGAATTTTTGAATCTTTAAATTTCCCAAATTTCTCCAATTTTCGATTTCCTCATTTTTTTCAGAATTTTCTTCTGGTTTTTTTTCACTTTAATGTTATCACCAACATTTTCACAGTTCCCACTTTTCTGATATCTCTTAGAAATTGAGATAATTGATCTCGTTACCTGGTGGGCAGCCAATTCTATACCATCACTTTGAGCCAATTTATCTTAGTTTCTACTGATAAAATGTTTATCATAATATCACCAACATTTTATTCGTTTACCACTTTTTGATATCTTTTGTAGTAACCGAGATAATTTAATTCAAAGTGATCACCTCCACCGGTTACGYGGTGGGCGCTACTGTCCGAGCCAATTCTATACTTTGAGCCTATATATGTGGATTTCTGTGAATGATATCAAAAACTTGTCAACTAATAAAACACTTATCATACTATTTCCCACATTTTTTCAGTTTGTATGTTTTCGATACCTCTTATAGGAACCAAAATAATTCAGGGCAAAGTACAAGTATGGTGGTGGCGCAGCCAACGGCGCCGACCGCGCCGACATTAGAGACAAAGTGTTTTGAGCTCGATTATCTGAGTTCCTGCAAGAGATATCAAAAAGTGGTCAACTAATAAAACATTTATCATGATATCACAATAATTTTGATAGTTAACCATTGCTTGATATCTGTAACAAGAATCGAGCTATTTGAGCTCAAAGTGTAGGGATGGTGATGGTGCCGACCAAAAGCTTTGCGTGATTTGAGCTCATTTATCTCAATTACTATAAGTGATATTAAATAGCCGTCAACTGATAAAATGTTTATCATATTTTGACCAACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 288 213</canonical_bands>
                <polymorphic_bands>712 288</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>505 197 158 133 7</canonical_bands>
                <polymorphic_bands>702 158 133 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCCACTTTTCTGATATCTCTTA</pcr_primer_p1>
		<pcr_primer_p2>AAGAGGCTTTGATTAGTTATGTG</pcr_primer_p2>
		<pcr_amplicon_size>802</pcr_amplicon_size>
		<canonical_amplicon>TCCCACTTTTCTGATATCTCTTAGAAATTGAGATAATTGATCTCGTTACCTGGTGGGCAGCCAATTCTATACCATCACTTTGAGCCAATTTATCTTAGTTTCTACTGATAAAATGTTTATCATAATATCACCAACATTTTATTCGTTTACCACTTTTTGATATCTTTTGTAGTAACCGAGATAATTTAATTCAAAGTGATCACCTCCACCGGTTACGCGGTGGGCGCTACTGTCCGAGCC</canonical_amplicon>
		<polymorphic_amplicon>TCCCACTTTTCTGATATCTCTTAGAAATTGAGATAATTGATCTCGTTACCTGGTGGGCAGCCAATTCTATACCATCACTTTGAGCCAATTTATCTTAGTTTCTACTGATAAAATGTTTATCATAATATCACCAACATTTTATTCGTTTACCACTTTTTGATATCTTTTGTAGTAACCGAGATAATTTAATTCAAAGTGATCACCTCCACCGGTTACGYGGTGGGCGCTACTGTCCGAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25598</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>164360</contig_pos>
        <strand></strand>
        <context>gtggatttct[G/A]kgartgatat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GCTACTGTCCGAGCCAATTCTATACTTTGAGCCTATATATGTGGATTTCT</left_flank>
        <right_flank>TGAATGATATCAAAAACTTGTCAACTAATAAAACACTTATCATACTATTT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTTTTGTTATTTTGAATTTTCAATGTTTTTTGATTTTCCGAATTTTGTAATTCTTGAAAATTCAGAAATTCGGAATTTTCTGAATTTCGGAATTCCTAGAATTTCAGAATTTTTGAATCTTTAAATTTCCCAAATTTCTCCAATTTTCGATTTCCTCATTTTTTTCAGAATTTTCTTCTGGTTTTTTTTCACTTTAATGTTATCACCAACATTTTCACAGTTCCCACTTTTCTGATATCTCTTAGAAATTGAGATAATTGATCTCGTTACCTGGTGGGCAGCCAATTCTATACCATCACTTTGAGCCAATTTATCTTAGTTTCTACTGATAAAATGTTTATCATAATATCACCAACATTTTATTCGTTTACCACTTTTTGATATCTTTTGTAGTAACCGAGATAATTTAATTCAAAGTGATCACCTCCACCGGTTACGCGGTGGGCGCTACTGTCCGAGCCAATTCTATACTTTGAGCCTATATATGTGGATTTCTGTGAATGATATCAAAAACTTGTCAACTAATAAAACACTTATCATACTATTTCCCACATTTTTTCAGTTTGTATGTTTTCGATACCTCTTATAGGAACCAAAATAATTCAGGGCAAAGTACAAGTATGGTGGTGGCGCAGCCAACGGCGCCGACCGCGCCGACATTAGAGACAAAGTGTTTTGAGCTCGATTATCTGAGTTCCTGCAAGAGATATCAAAAAGTGGTCAACTAATAAAACATTTATCATGATATCACAATAATTTTGATAGTTAACCATTGCTTGATATCTGTAACAAGAATCGAGCTATTTGAGCTCAAAGTGTAGGGATGGTGATGGTGCCGACCAAAAGCTTTGCGTGATTTGAGCTCATTTATCTCAATTACTATAAGTGATATTAAATAGCCGTCAACTGATAAAATGTTTATCATATTTTGACCAACATTTTTGTAGTTTGCACATTTTTTATATCTCTTACAGGAACCGAGATAATATAGCTCAAA</canonical>
            <polymorphic>TATTTTTTGTTATTTTGAATTTTCAATGTTTTTTGATTTTCCGAATTTTGTAATTCTTGAAAATTCAGAAATTCGGAATTTTCTGAATTTCGGAATTCCTAGAATTTCAGAATTTTTGAATCTTTAAATTTCCCAAATTTCTCCAATTTTCGATTTCCTCATTTTTTTCAGAATTTTCTTCTGGTTTTTTTTCACTTTAATGTTATCACCAACATTTTCACAGTTCCCACTTTTCTGATATCTCTTAGAAATTGAGATAATTGATCTCGTTACCTGGTGGGCAGCCAATTCTATACCATCACTTTGAGCCAATTTATCTTAGTTTCTACTGATAAAATGTTTATCATAATATCACCAACATTTTATTCGTTTACCACTTTTTGATATCTTTTGTAGTAACCGAGATAATTTAATTCAAAGTGATCACCTCCACCGGTTACGCGGTGGGCGCTACTGTCCGAGCCAATTCTATACTTTGAGCCTATATATGTGGATTTCTRTGAATGATATCAAAAACTTGTCAACTAATAAAACACTTATCATACTATTTCCCACATTTTTTCAGTTTGTATGTTTTCGATACCTCTTATAGGAACCAAAATAATTCAGGGCAAAGTACAAGTATGGTGGTGGCGCAGCCAACGGCGCCGACCGCGCCGACATTAGAGACAAAGTGTTTTGAGCTCGATTATCTGAGTTCCTGCAAGAGATATCAAAAAGTGGTCAACTAATAAAACATTTATCATGATATCACAATAATTTTGATAGTTAACCATTGCTTGATATCTGTAACAAGAATCGAGCTATTTGAGCTCAAAGTGTAGGGATGGTGATGGTGCCGACCAAAAGCTTTGCGTGATTTGAGCTCATTTATCTCAATTACTATAAGTGATATTAAATAGCCGTCAACTGATAAAATGTTTATCATATTTTGACCAACATTTTTGTAGTTTGCACATTTTTTATATCTCTTACAGGAACCGAGATAATATAGCTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>194 75 68 65 53 50 46 46 46 44 44 33 33 31 22 22 20 19 14 14 12 11 10 9 6 6 4 3</canonical_bands>
                <polymorphic_bands>194 75 68 65 53 50 46 46 46 44 44 43 33 31 22 22 20 19 14 14 12 11 9 6 6 4 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCCACTTTTCTGATATCTCTTA</pcr_primer_p1>
		<pcr_primer_p2>AAGAGGCTTTGATTAGTTATGTG</pcr_primer_p2>
		<pcr_amplicon_size>802</pcr_amplicon_size>
		<canonical_amplicon>TCCCACTTTTCTGATATCTCTTAGAAATTGAGATAATTGATCTCGTTACCTGGTGGGCAGCCAATTCTATACCATCACTTTGAGCCAATTTATCTTAGTTTCTACTGATAAAATGTTTATCATAATATCACCAACATTTTATTCGTTTACCACTTTTTGATATCTTTTGTAGTAACCGAGATAATTTAATTCAAAGTGATCACCTCCACCGGTTACGCGGTGGGCGCTACTGTCCGAGCCAATTCTATACTTTGAGCCTATATATGTGGATTTCTGTGAATGATATCAAAAACTTGTC</canonical_amplicon>
		<polymorphic_amplicon>TCCCACTTTTCTGATATCTCTTAGAAATTGAGATAATTGATCTCGTTACCTGGTGGGCAGCCAATTCTATACCATCACTTTGAGCCAATTTATCTTAGTTTCTACTGATAAAATGTTTATCATAATATCACCAACATTTTATTCGTTTACCACTTTTTGATATCTTTTGTAGTAACCGAGATAATTTAATTCAAAGTGATCACCTCCACCGGTTACGCGGTGGGCGCTACTGTCCGAGCCAATTCTATACTTTGAGCCTATATATGTGGATTTCTRTGAATGATATCAAAAACTTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25599</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>164361</contig_pos>
        <strand></strand>
        <context>tggatttctr[T/G]gartgatatc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CTACTGTCCGAGCCAATTCTATACTTTGAGCCTATATATGTGGATTTCTG</left_flank>
        <right_flank>GAATGATATCAAAAACTTGTCAACTAATAAAACACTTATCATACTATTTC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTTGTTATTTTGAATTTTCAATGTTTTTTGATTTTCCGAATTTTGTAATTCTTGAAAATTCAGAAATTCGGAATTTTCTGAATTTCGGAATTCCTAGAATTTCAGAATTTTTGAATCTTTAAATTTCCCAAATTTCTCCAATTTTCGATTTCCTCATTTTTTTCAGAATTTTCTTCTGGTTTTTTTTCACTTTAATGTTATCACCAACATTTTCACAGTTCCCACTTTTCTGATATCTCTTAGAAATTGAGATAATTGATCTCGTTACCTGGTGGGCAGCCAATTCTATACCATCACTTTGAGCCAATTTATCTTAGTTTCTACTGATAAAATGTTTATCATAATATCACCAACATTTTATTCGTTTACCACTTTTTGATATCTTTTGTAGTAACCGAGATAATTTAATTCAAAGTGATCACCTCCACCGGTTACGCGGTGGGCGCTACTGTCCGAGCCAATTCTATACTTTGAGCCTATATATGTGGATTTCTGTGAATGATATCAAAAACTTGTCAACTAATAAAACACTTATCATACTATTTCCCACATTTTTTCAGTTTGTATGTTTTCGATACCTCTTATAGGAACCAAAATAATTCAGGGCAAAGTACAAGTATGGTGGTGGCGCAGCCAACGGCGCCGACCGCGCCGACATTAGAGACAAAGTGTTTTGAGCTCGATTATCTGAGTTCCTGCAAGAGATATCAAAAAGTGGTCAACTAATAAAACATTTATCATGATATCACAATAATTTTGATAGTTAACCATTGCTTGATATCTGTAACAAGAATCGAGCTATTTGAGCTCAAAGTGTAGGGATGGTGATGGTGCCGACCAAAAGCTTTGCGTGATTTGAGCTCATTTATCTCAATTACTATAAGTGATATTAAATAGCCGTCAACTGATAAAATGTTTATCATATTTTGACCAACATTTTTGTAGTTTGCACATTTTTTATATCTCTTACAGGAACCGAGATAATATAGCTCAAAG</canonical>
            <polymorphic>ATTTTTTGTTATTTTGAATTTTCAATGTTTTTTGATTTTCCGAATTTTGTAATTCTTGAAAATTCAGAAATTCGGAATTTTCTGAATTTCGGAATTCCTAGAATTTCAGAATTTTTGAATCTTTAAATTTCCCAAATTTCTCCAATTTTCGATTTCCTCATTTTTTTCAGAATTTTCTTCTGGTTTTTTTTCACTTTAATGTTATCACCAACATTTTCACAGTTCCCACTTTTCTGATATCTCTTAGAAATTGAGATAATTGATCTCGTTACCTGGTGGGCAGCCAATTCTATACCATCACTTTGAGCCAATTTATCTTAGTTTCTACTGATAAAATGTTTATCATAATATCACCAACATTTTATTCGTTTACCACTTTTTGATATCTTTTGTAGTAACCGAGATAATTTAATTCAAAGTGATCACCTCCACCGGTTACGCGGTGGGCGCTACTGTCCGAGCCAATTCTATACTTTGAGCCTATATATGTGGATTTCTGKGAATGATATCAAAAACTTGTCAACTAATAAAACACTTATCATACTATTTCCCACATTTTTTCAGTTTGTATGTTTTCGATACCTCTTATAGGAACCAAAATAATTCAGGGCAAAGTACAAGTATGGTGGTGGCGCAGCCAACGGCGCCGACCGCGCCGACATTAGAGACAAAGTGTTTTGAGCTCGATTATCTGAGTTCCTGCAAGAGATATCAAAAAGTGGTCAACTAATAAAACATTTATCATGATATCACAATAATTTTGATAGTTAACCATTGCTTGATATCTGTAACAAGAATCGAGCTATTTGAGCTCAAAGTGTAGGGATGGTGATGGTGCCGACCAAAAGCTTTGCGTGATTTGAGCTCATTTATCTCAATTACTATAAGTGATATTAAATAGCCGTCAACTGATAAAATGTTTATCATATTTTGACCAACATTTTTGTAGTTTGCACATTTTTTATATCTCTTACAGGAACCGAGATAATATAGCTCAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>193 75 68 65 53 50 46 46 46 45 44 33 33 31 22 22 20 19 14 14 12 11 10 9 6 6 4 3</canonical_bands>
                <polymorphic_bands>193 75 68 65 53 50 46 46 46 45 44 43 33 31 22 22 20 19 14 14 12 11 9 6 6 4 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCCACTTTTCTGATATCTCTTA</pcr_primer_p1>
		<pcr_primer_p2>AAGAGGCTTTGATTAGTTATGTG</pcr_primer_p2>
		<pcr_amplicon_size>802</pcr_amplicon_size>
		<canonical_amplicon>TCCCACTTTTCTGATATCTCTTAGAAATTGAGATAATTGATCTCGTTACCTGGTGGGCAGCCAATTCTATACCATCACTTTGAGCCAATTTATCTTAGTTTCTACTGATAAAATGTTTATCATAATATCACCAACATTTTATTCGTTTACCACTTTTTGATATCTTTTGTAGTAACCGAGATAATTTAATTCAAAGTGATCACCTCCACCGGTTACGCGGTGGGCGCTACTGTCCGAGCCAATTCTATACTTTGAGCCTATATATGTGGATTTCTGTGAATGATATCAAAAACTTGTCA</canonical_amplicon>
		<polymorphic_amplicon>TCCCACTTTTCTGATATCTCTTAGAAATTGAGATAATTGATCTCGTTACCTGGTGGGCAGCCAATTCTATACCATCACTTTGAGCCAATTTATCTTAGTTTCTACTGATAAAATGTTTATCATAATATCACCAACATTTTATTCGTTTACCACTTTTTGATATCTTTTGTAGTAACCGAGATAATTTAATTCAAAGTGATCACCTCCACCGGTTACGCGGTGGGCGCTACTGTCCGAGCCAATTCTATACTTTGAGCCTATATATGTGGATTTCTGKGAATGATATCAAAAACTTGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25600</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>164364</contig_pos>
        <strand></strand>
        <context>atttctrkga[A/G]tgatatcaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGTCCGAGCCAATTCTATACTTTGAGCCTATATATGTGGATTTCTGTGA</left_flank>
        <right_flank>TGATATCAAAAACTTGTCAACTAATAAAACACTTATCATACTATTTCCCA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGTTATTTTGAATTTTCAATGTTTTTTGATTTTCCGAATTTTGTAATTCTTGAAAATTCAGAAATTCGGAATTTTCTGAATTTCGGAATTCCTAGAATTTCAGAATTTTTGAATCTTTAAATTTCCCAAATTTCTCCAATTTTCGATTTCCTCATTTTTTTCAGAATTTTCTTCTGGTTTTTTTTCACTTTAATGTTATCACCAACATTTTCACAGTTCCCACTTTTCTGATATCTCTTAGAAATTGAGATAATTGATCTCGTTACCTGGTGGGCAGCCAATTCTATACCATCACTTTGAGCCAATTTATCTTAGTTTCTACTGATAAAATGTTTATCATAATATCACCAACATTTTATTCGTTTACCACTTTTTGATATCTTTTGTAGTAACCGAGATAATTTAATTCAAAGTGATCACCTCCACCGGTTACGCGGTGGGCGCTACTGTCCGAGCCAATTCTATACTTTGAGCCTATATATGTGGATTTCTGTGAATGATATCAAAAACTTGTCAACTAATAAAACACTTATCATACTATTTCCCACATTTTTTCAGTTTGTATGTTTTCGATACCTCTTATAGGAACCAAAATAATTCAGGGCAAAGTACAAGTATGGTGGTGGCGCAGCCAACGGCGCCGACCGCGCCGACATTAGAGACAAAGTGTTTTGAGCTCGATTATCTGAGTTCCTGCAAGAGATATCAAAAAGTGGTCAACTAATAAAACATTTATCATGATATCACAATAATTTTGATAGTTAACCATTGCTTGATATCTGTAACAAGAATCGAGCTATTTGAGCTCAAAGTGTAGGGATGGTGATGGTGCCGACCAAAAGCTTTGCGTGATTTGAGCTCATTTATCTCAATTACTATAAGTGATATTAAATAGCCGTCAACTGATAAAATGTTTATCATATTTTGACCAACATTTTTGTAGTTTGCACATTTTTTATATCTCTTACAGGAACCGAGATAATATAGCTCAAAGTGC</canonical>
            <polymorphic>TTTTGTTATTTTGAATTTTCAATGTTTTTTGATTTTCCGAATTTTGTAATTCTTGAAAATTCAGAAATTCGGAATTTTCTGAATTTCGGAATTCCTAGAATTTCAGAATTTTTGAATCTTTAAATTTCCCAAATTTCTCCAATTTTCGATTTCCTCATTTTTTTCAGAATTTTCTTCTGGTTTTTTTTCACTTTAATGTTATCACCAACATTTTCACAGTTCCCACTTTTCTGATATCTCTTAGAAATTGAGATAATTGATCTCGTTACCTGGTGGGCAGCCAATTCTATACCATCACTTTGAGCCAATTTATCTTAGTTTCTACTGATAAAATGTTTATCATAATATCACCAACATTTTATTCGTTTACCACTTTTTGATATCTTTTGTAGTAACCGAGATAATTTAATTCAAAGTGATCACCTCCACCGGTTACGCGGTGGGCGCTACTGTCCGAGCCAATTCTATACTTTGAGCCTATATATGTGGATTTCTGTGARTGATATCAAAAACTTGTCAACTAATAAAACACTTATCATACTATTTCCCACATTTTTTCAGTTTGTATGTTTTCGATACCTCTTATAGGAACCAAAATAATTCAGGGCAAAGTACAAGTATGGTGGTGGCGCAGCCAACGGCGCCGACCGCGCCGACATTAGAGACAAAGTGTTTTGAGCTCGATTATCTGAGTTCCTGCAAGAGATATCAAAAAGTGGTCAACTAATAAAACATTTATCATGATATCACAATAATTTTGATAGTTAACCATTGCTTGATATCTGTAACAAGAATCGAGCTATTTGAGCTCAAAGTGTAGGGATGGTGATGGTGCCGACCAAAAGCTTTGCGTGATTTGAGCTCATTTATCTCAATTACTATAAGTGATATTAAATAGCCGTCAACTGATAAAATGTTTATCATATTTTGACCAACATTTTTGTAGTTTGCACATTTTTTATATCTCTTACAGGAACCGAGATAATATAGCTCAAAGTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCCACTTTTCTGATATCTCTTA</pcr_primer_p1>
		<pcr_primer_p2>AAGAGGCTTTGATTAGTTATGTG</pcr_primer_p2>
		<pcr_amplicon_size>802</pcr_amplicon_size>
		<canonical_amplicon>TCCCACTTTTCTGATATCTCTTAGAAATTGAGATAATTGATCTCGTTACCTGGTGGGCAGCCAATTCTATACCATCACTTTGAGCCAATTTATCTTAGTTTCTACTGATAAAATGTTTATCATAATATCACCAACATTTTATTCGTTTACCACTTTTTGATATCTTTTGTAGTAACCGAGATAATTTAATTCAAAGTGATCACCTCCACCGGTTACGCGGTGGGCGCTACTGTCCGAGCCAATTCTATACTTTGAGCCTATATATGTGGATTTCTGTGAATGATATCAAAAACTTGTCAACT</canonical_amplicon>
		<polymorphic_amplicon>TCCCACTTTTCTGATATCTCTTAGAAATTGAGATAATTGATCTCGTTACCTGGTGGGCAGCCAATTCTATACCATCACTTTGAGCCAATTTATCTTAGTTTCTACTGATAAAATGTTTATCATAATATCACCAACATTTTATTCGTTTACCACTTTTTGATATCTTTTGTAGTAACCGAGATAATTTAATTCAAAGTGATCACCTCCACCGGTTACGCGGTGGGCGCTACTGTCCGAGCCAATTCTATACTTTGAGCCTATATATGTGGATTTCTGTGARTGATATCAAAAACTTGTCAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25601</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>164460</contig_pos>
        <strand></strand>
        <context>taggaaccaa[A/G]ataattcagg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCCACATTTTTTCAGTTTGTATGTTTTCGATACCTCTTATAGGAACCAA</left_flank>
        <right_flank>ATAATTCAGGGCAAAGTACAAGTATGGTGGTGGCGCAGCCAACGGCGCCG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATTTCAGAATTTTTGAATCTTTAAATTTCCCAAATTTCTCCAATTTTCGATTTCCTCATTTTTTTCAGAATTTTCTTCTGGTTTTTTTTCACTTTAATGTTATCACCAACATTTTCACAGTTCCCACTTTTCTGATATCTCTTAGAAATTGAGATAATTGATCTCGTTACCTGGTGGGCAGCCAATTCTATACCATCACTTTGAGCCAATTTATCTTAGTTTCTACTGATAAAATGTTTATCATAATATCACCAACATTTTATTCGTTTACCACTTTTTGATATCTTTTGTAGTAACCGAGATAATTTAATTCAAAGTGATCACCTCCACCGGTTACGCGGTGGGCGCTACTGTCCGAGCCAATTCTATACTTTGAGCCTATATATGTGGATTTCTGTGAATGATATCAAAAACTTGTCAACTAATAAAACACTTATCATACTATTTCCCACATTTTTTCAGTTTGTATGTTTTCGATACCTCTTATAGGAACCAAAATAATTCAGGGCAAAGTACAAGTATGGTGGTGGCGCAGCCAACGGCGCCGACCGCGCCGACATTAGAGACAAAGTGTTTTGAGCTCGATTATCTGAGTTCCTGCAAGAGATATCAAAAAGTGGTCAACTAATAAAACATTTATCATGATATCACAATAATTTTGATAGTTAACCATTGCTTGATATCTGTAACAAGAATCGAGCTATTTGAGCTCAAAGTGTAGGGATGGTGATGGTGCCGACCAAAAGCTTTGCGTGATTTGAGCTCATTTATCTCAATTACTATAAGTGATATTAAATAGCCGTCAACTGATAAAATGTTTATCATATTTTGACCAACATTTTTGTAGTTTGCACATTTTTTATATCTCTTACAGGAACCGAGATAATATAGCTCAAAGTGCACATAACTAATCAAAGCCTCTTAAAAAAGCTCCTAACCTAATTTCCCCCTAAATGTTTGCTAGTTTTTTAAAGAATAGATTCTAGTCCCTCCCCAA</canonical>
            <polymorphic>AGAATTTCAGAATTTTTGAATCTTTAAATTTCCCAAATTTCTCCAATTTTCGATTTCCTCATTTTTTTCAGAATTTTCTTCTGGTTTTTTTTCACTTTAATGTTATCACCAACATTTTCACAGTTCCCACTTTTCTGATATCTCTTAGAAATTGAGATAATTGATCTCGTTACCTGGTGGGCAGCCAATTCTATACCATCACTTTGAGCCAATTTATCTTAGTTTCTACTGATAAAATGTTTATCATAATATCACCAACATTTTATTCGTTTACCACTTTTTGATATCTTTTGTAGTAACCGAGATAATTTAATTCAAAGTGATCACCTCCACCGGTTACGCGGTGGGCGCTACTGTCCGAGCCAATTCTATACTTTGAGCCTATATATGTGGATTTCTGTGAATGATATCAAAAACTTGTCAACTAATAAAACACTTATCATACTATTTCCCACATTTTTTCAGTTTGTATGTTTTCGATACCTCTTATAGGAACCAARATAATTCAGGGCAAAGTACAAGTATGGTGGTGGCGCAGCCAACGGCGCCGACCGCGCCGACATTAGAGACAAAGTGTTTTGAGCTCGATTATCTGAGTTCCTGCAAGAGATATCAAAAAGTGGTCAACTAATAAAACATTTATCATGATATCACAATAATTTTGATAGTTAACCATTGCTTGATATCTGTAACAAGAATCGAGCTATTTGAGCTCAAAGTGTAGGGATGGTGATGGTGCCGACCAAAAGCTTTGCGTGATTTGAGCTCATTTATCTCAATTACTATAAGTGATATTAAATAGCCGTCAACTGATAAAATGTTTATCATATTTTGACCAACATTTTTGTAGTTTGCACATTTTTTATATCTCTTACAGGAACCGAGATAATATAGCTCAAAGTGCACATAACTAATCAAAGCCTCTTAAAAAAGCTCCTAACCTAATTTCCCCCTAAATGTTTGCTAGTTTTTTAAAGAATAGATTCTAGTCCCTCCCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCCACTTTTCTGATATCTCTTA</pcr_primer_p1>
		<pcr_primer_p2>AAGAGGCTTTGATTAGTTATGTG</pcr_primer_p2>
		<pcr_amplicon_size>802</pcr_amplicon_size>
		<canonical_amplicon>TCCCACTTTTCTGATATCTCTTAGAAATTGAGATAATTGATCTCGTTACCTGGTGGGCAGCCAATTCTATACCATCACTTTGAGCCAATTTATCTTAGTTTCTACTGATAAAATGTTTATCATAATATCACCAACATTTTATTCGTTTACCACTTTTTGATATCTTTTGTAGTAACCGAGATAATTTAATTCAAAGTGATCACCTCCACCGGTTACGCGGTGGGCGCTACTGTCCGAGCCAATTCTATACTTTGAGCCTATATATGTGGATTTCTGTGAATGATATCAAAAACTTGTCAACTAATAAAACACTTATCATACTATTTCCCACATTTTTTCAGTTTGTATGTTTTCGATACCTCTTATAGGAACCAAAATAATTCAGGGCAAAGTACAAGTATGGTGGTGGCGCAGCCAACGGCGCCGACCGCGCCGACATTAGAGACAAAGTGTTTTGAGCTCGATTATCTGAGTTCCTGCAAGAGATATCAAAAAGTGGTCAACTAATAAAACATTTATCATGATATCACAATAATTTTGATAGTTAACCATTGCTTGATATCTGTAACAAGAATCGAGCTATTTGAGCTCAAAGTGTAGGGATGGTGATGGTGCCGACCAAAAGCTTTGCGTGATTTGAGCTCATTTATCTCAATTACTATAAGTGATATTAAATAGCCGTCAACTGATAAAATGTTTATCATATTTTGACCAACATTTTTGTAGTTTGCACATTTTTTATATCTCTTACAGGAACCGAGATAATATAGCTCAAAGTGCACATAACTAATCAAAGCCTCTT</canonical_amplicon>
		<polymorphic_amplicon>TCCCACTTTTCTGATATCTCTTAGAAATTGAGATAATTGATCTCGTTACCTGGTGGGCAGCCAATTCTATACCATCACTTTGAGCCAATTTATCTTAGTTTCTACTGATAAAATGTTTATCATAATATCACCAACATTTTATTCGTTTACCACTTTTTGATATCTTTTGTAGTAACCGAGATAATTTAATTCAAAGTGATCACCTCCACCGGTTACGCGGTGGGCGCTACTGTCCGAGCCAATTCTATACTTTGAGCCTATATATGTGGATTTCTGTGAATGATATCAAAAACTTGTCAACTAATAAAACACTTATCATACTATTTCCCACATTTTTTCAGTTTGTATGTTTTCGATACCTCTTATAGGAACCAARATAATTCAGGGCAAAGTACAAGTATGGTGGTGGCGCAGCCAACGGCGCCGACCGCGCCGACATTAGAGACAAAGTGTTTTGAGCTCGATTATCTGAGTTCCTGCAAGAGATATCAAAAAGTGGTCAACTAATAAAACATTTATCATGATATCACAATAATTTTGATAGTTAACCATTGCTTGATATCTGTAACAAGAATCGAGCTATTTGAGCTCAAAGTGTAGGGATGGTGATGGTGCCGACCAAAAGCTTTGCGTGATTTGAGCTCATTTATCTCAATTACTATAAGTGATATTAAATAGCCGTCAACTGATAAAATGTTTATCATATTTTGACCAACATTTTTGTAGTTTGCACATTTTTTATATCTCTTACAGGAACCGAGATAATATAGCTCAAAGTGCACATAACTAATCAAAGCCTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25602</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>168923</contig_pos>
        <strand></strand>
        <context>ATCGAAATTT[C/A]AAAAAAARCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TGGATTCCTGGGAAAACTTTATATAATGGATTTCCAATAAATCGAAATTT</left_flank>
        <right_flank>AAAAAAATCAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAAC</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAACTTCCAGGGAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCGGAACTTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTTTAAAATTGGATTCCTGGGAAAACTTTATATAATGGATTTCCAATAAATCGAAATTTCAAAAAAATCAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATTTTTCGCGCGCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAGCAAATGTTTTTATTCCGAAAAAAAATCAGTTCGATCAAGTTAAAATTGGCACTGATGGCTCCGCCTCTTTTTGACGGCGAACTCTGGAAAAAAACGAACCGATTCGACCAAACAAACCAGTGGCATCCAGCTCATGCATGCCGGCTTCCTGAAAAGTTAATTATCTAATTAAGTAATTAAGATATCAAGAAACGGTCAATTAAAAAAATGTTGGAAATTTCATGGGTTCTAATTTTGTAGT</canonical>
            <polymorphic>GTAACTTCCAGGGAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCGGAACTTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTTTAAAATTGGATTCCTGGGAAAACTTTATATAATGGATTTCCAATAAATCGAAATTTMAAAAAAATCAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATTTTTCGCGCGCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAGCAAATGTTTTTATTCCGAAAAAAAATCAGTTCGATCAAGTTAAAATTGGCACTGATGGCTCCGCCTCTTTTTGACGGCGAACTCTGGAAAAAAACGAACCGATTCGACCAAACAAACCAGTGGCATCCAGCTCATGCATGCCGGCTTCCTGAAAAGTTAATTATCTAATTAAGTAATTAAGATATCAAGAAACGGTCAATTAAAAAAATGTTGGAAATTTCATGGGTTCTAATTTTGTAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGCTACAGTAATCCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GCAAATAAATGGGGAAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>617</pcr_amplicon_size>
		<canonical_amplicon>TCAAAAAAATCAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGC</canonical_amplicon>
		<polymorphic_amplicon>TMAAAAAAATCAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25603</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>168931</contig_pos>
        <strand>+</strand>
        <context>TTMAAAAAAA[A/G]CAGAATTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGGAAAACTTTATATAATGGATTTCCAATAAATCGAAATTTCAAAAAAA</left_flank>
        <right_flank>CAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGGGAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCGGAACTTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTTTAAAATTGGATTCCTGGGAAAACTTTATATAATGGATTTCCAATAAATCGAAATTTCAAAAAAATCAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATTTTTCGCGCGCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAGCAAATGTTTTTATTCCGAAAAAAAATCAGTTCGATCAAGTTAAAATTGGCACTGATGGCTCCGCCTCTTTTTGACGGCGAACTCTGGAAAAAAACGAACCGATTCGACCAAACAAACCAGTGGCATCCAGCTCATGCATGCCGGCTTCCTGAAAAGTTAATTATCTAATTAAGTAATTAAGATATCAAGAAACGGTCAATTAAAAAAATGTTGGAAATTTCATGGGTTCTAATTTTGTAGTAAACAATT</canonical>
            <polymorphic>CAGGGAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCGGAACTTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTTTAAAATTGGATTCCTGGGAAAACTTTATATAATGGATTTCCAATAAATCGAAATTTCAAAAAAARCAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATTTTTCGCGCGCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAGCAAATGTTTTTATTCCGAAAAAAAATCAGTTCGATCAAGTTAAAATTGGCACTGATGGCTCCGCCTCTTTTTGACGGCGAACTCTGGAAAAAAACGAACCGATTCGACCAAACAAACCAGTGGCATCCAGCTCATGCATGCCGGCTTCCTGAAAAGTTAATTATCTAATTAAGTAATTAAGATATCAAGAAACGGTCAATTAAAAAAATGTTGGAAATTTCATGGGTTCTAATTTTGTAGTAAACAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>265 233 75 11 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>340 233 11 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGCTACAGTAATCCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GCAAATAAATGGGGAAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>617</pcr_amplicon_size>
		<canonical_amplicon>ATCAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGC</canonical_amplicon>
		<polymorphic_amplicon>ARCAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25604</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>169011</contig_pos>
        <strand>+</strand>
        <context>TGTGCCAAAA[C/T]TTTTTTCAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAA</left_flank>
        <right_flank>TTTTTTCAACTGTTTTTTTTTCATTTTTCGCGCGCAGACATGCAAATAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTTTAAAATTGGATTCCTGGGAAAACTTTATATAATGGATTTCCAATAAATCGAAATTTCAAAAAAATCAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATTTTTCGCGCGCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAGCAAATGTTTTTATTCCGAAAAAAAATCAGTTCGATCAAGTTAAAATTGGCACTGATGGCTCCGCCTCTTTTTGACGGCGAACTCTGGAAAAAAACGAACCGATTCGACCAAACAAACCAGTGGCATCCAGCTCATGCATGCCGGCTTCCTGAAAAGTTAATTATCTAATTAAGTAATTAAGATATCAAGAAACGGTCAATTAAAAAAATGTTGGAAATTTCATGGGTTCTAATTTTGTAGTAAACAATTTTTTGATTGCTTTTTTAGTTTTGGAGATATACGCTGTCAAAGTCGGACGATACCAAAAAGACGCAGACAAAGTATAAGCT</canonical>
            <polymorphic>TCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTTTAAAATTGGATTCCTGGGAAAACTTTATATAATGGATTTCCAATAAATCGAAATTTCAAAAAAATCAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAAYTTTTTTCAACTGTTTTTTTTTCATTTTTCGCGCGCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAGCAAATGTTTTTATTCCGAAAAAAAATCAGTTCGATCAAGTTAAAATTGGCACTGATGGCTCCGCCTCTTTTTGACGGCGAACTCTGGAAAAAAACGAACCGATTCGACCAAACAAACCAGTGGCATCCAGCTCATGCATGCCGGCTTCCTGAAAAGTTAATTATCTAATTAAGTAATTAAGATATCAAGAAACGGTCAATTAAAAAAATGTTGGAAATTTCATGGGTTCTAATTTTGTAGTAAACAATTTTTTGATTGCTTTTTTAGTTTTGGAGATATACGCTGTCAAAGTCGGACGATACCAAAAAGACGCAGACAAAGTATAAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>389 114 74 57 17 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 5</canonical_bands>
                <polymorphic_bands>463 114 57 17 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 5</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>135 115 84 82 48 47 23 18 17 15 15 11 11 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 5 5</canonical_bands>
                <polymorphic_bands>135 115 93 84 48 47 23 18 17 15 15 11 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAATTCAATTTCCAGACAA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTCCTCAACTTGTTTGATT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATTTTTCGCGCGCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAG</canonical_amplicon>
		<polymorphic_amplicon>CAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAAYTTTTTTCAACTGTTTTTTTTTCATTTTTCGCGCGCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25605</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>169073</contig_pos>
        <strand>+</strand>
        <context>ACGCAGAAAG[C/T]CTATGCATAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTTTTTTTCATTTTTCGCGCGCAGACATGCAAATAAATACGCAGAAAG</left_flank>
        <right_flank>CTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTTTAAAATTGGATTCCTGGGAAAACTTTATATAATGGATTTCCAATAAATCGAAATTTCAAAAAAATCAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATTTTTCGCGCGCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAGCAAATGTTTTTATTCCGAAAAAAAATCAGTTCGATCAAGTTAAAATTGGCACTGATGGCTCCGCCTCTTTTTGACGGCGAACTCTGGAAAAAAACGAACCGATTCGACCAAACAAACCAGTGGCATCCAGCTCATGCATGCCGGCTTCCTGAAAAGTTAATTATCTAATTAAGTAATTAAGATATCAAGAAACGGTCAATTAAAAAAATGTTGGAAATTTCATGGGTTCTAATTTTGTAGTAAACAATTTTTTGATTGCTTTTTTAGTTTTGGAGATATACGCTGTCAAAGTCGGACGATACCAAAAAGACGCAGACAAAGTATAAGCTCTCGCTGAACGTATATATCTCCAAAACTAAGAATGCTATATAAAAACAGCTGACTGCAAAAT</canonical>
            <polymorphic>ATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTTTAAAATTGGATTCCTGGGAAAACTTTATATAATGGATTTCCAATAAATCGAAATTTCAAAAAAATCAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATTTTTCGCGCGCAGACATGCAAATAAATACGCAGAAAGYCTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAGCAAATGTTTTTATTCCGAAAAAAAATCAGTTCGATCAAGTTAAAATTGGCACTGATGGCTCCGCCTCTTTTTGACGGCGAACTCTGGAAAAAAACGAACCGATTCGACCAAACAAACCAGTGGCATCCAGCTCATGCATGCCGGCTTCCTGAAAAGTTAATTATCTAATTAAGTAATTAAGATATCAAGAAACGGTCAATTAAAAAAATGTTGGAAATTTCATGGGTTCTAATTTTGTAGTAAACAATTTTTTGATTGCTTTTTTAGTTTTGGAGATATACGCTGTCAAAGTCGGACGATACCAAAAAGACGCAGACAAAGTATAAGCTCTCGCTGAACGTATATATCTCCAAAACTAAGAATGCTATATAAAAACAGCTGACTGCAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>499 183 168 72 51 14 13</canonical_bands>
                <polymorphic_bands>667 183 72 51 14 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAATTCAATTTCCAGACAA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTCCTCAACTTGTTTGATT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATTTTTCGCGCGCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAG</canonical_amplicon>
		<polymorphic_amplicon>CAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATTTTTCGCGCGCAGACATGCAAATAAATACGCAGAAAGYCTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25606</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>169424</contig_pos>
        <strand>+</strand>
        <context>attttgtagt[A/T]wacaattttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACGGTCAATTAAAAAAATGTTGGAAATTTCATGGGTTCTAATTTTGTAGT</left_flank>
        <right_flank>AACAATTTTTTGATTGCTTTTTTAGTTTTGGAGATATACGCTGTCAAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAATCAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATTTTTCGCGCGCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAGCAAATGTTTTTATTCCGAAAAAAAATCAGTTCGATCAAGTTAAAATTGGCACTGATGGCTCCGCCTCTTTTTGACGGCGAACTCTGGAAAAAAACGAACCGATTCGACCAAACAAACCAGTGGCATCCAGCTCATGCATGCCGGCTTCCTGAAAAGTTAATTATCTAATTAAGTAATTAAGATATCAAGAAACGGTCAATTAAAAAAATGTTGGAAATTTCATGGGTTCTAATTTTGTAGTAAACAATTTTTTGATTGCTTTTTTAGTTTTGGAGATATACGCTGTCAAAGTCGGACGATACCAAAAAGACGCAGACAAAGTATAAGCTCTCGCTGAACGTATATATCTCCAAAACTAAGAATGCTATATAAAAACAGCTGACTGCAAAATTGTAGCTCATAAAATTTCCTGCATTTTGCTAGTTAACAAAATTTTGCTAGCATTTTCCGCTTTTGAGATATACGCGCTCAAAATCAGGCGATCCAAAAAAGAGACGCAGACAAGGCATATGCTCTTGCTGAACGCGTTGATCGCCAAAACTAAAATTGCTATCTAAAAATAGTTAATTGCAAAGTTGTAGCTCATAAAATTTCCTACATTTTGCTAGTTAACAAAAATTTCCTAGCGTTTTTCGTTTTCTAGTTATACGCGTTTAAAGCTGACGAGCTCCGAGATCAAGGAGAGACGTAGAGAAGCCATCCGCTCTTATTTCTCTGCGTTTCCCTTTGACTTCTAGGGGTA</canonical>
            <polymorphic>AAAAAATCAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATTTTTCGCGCGCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAGCAAATGTTTTTATTCCGAAAAAAAATCAGTTCGATCAAGTTAAAATTGGCACTGATGGCTCCGCCTCTTTTTGACGGCGAACTCTGGAAAAAAACGAACCGATTCGACCAAACAAACCAGTGGCATCCAGCTCATGCATGCCGGCTTCCTGAAAAGTTAATTATCTAATTAAGTAATTAAGATATCAAGAAACGGTCAATTAAAAAAATGTTGGAAATTTCATGGGTTCTAATTTTGTAGTWAACAATTTTTTGATTGCTTTTTTAGTTTTGGAGATATACGCTGTCAAAGTCGGACGATACCAAAAAGACGCAGACAAAGTATAAGCTCTCGCTGAACGTATATATCTCCAAAACTAAGAATGCTATATAAAAACAGCTGACTGCAAAATTGTAGCTCATAAAATTTCCTGCATTTTGCTAGTTAACAAAATTTTGCTAGCATTTTCCGCTTTTGAGATATACGCGCTCAAAATCAGGCGATCCAAAAAAGAGACGCAGACAAGGCATATGCTCTTGCTGAACGCGTTGATCGCCAAAACTAAAATTGCTATCTAAAAATAGTTAATTGCAAAGTTGTAGCTCATAAAATTTCCTACATTTTGCTAGTTAACAAAAATTTCCTAGCGTTTTTCGTTTTCTAGTTATACGCGTTTAAAGCTGACGAGCTCCGAGATCAAGGAGAGACGTAGAGAAGCCATCCGCTCTTATTTCTCTGCGTTTCCCTTTGACTTCTAGGGGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGCTTCCTGAAAAGTTAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATATTCTTAGCTTCGGAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>746</pcr_amplicon_size>
		<canonical_amplicon>CGGCTTCCTGAAAAGTTAATTATCTAATTAAGTAATTAAGATATCAAGAAACGGTCAATTAAAAAAATGTTGGAAATTTCATGGGTTCTAATTTTGTAGTAAACAATTTTTTGATTGCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CGGCTTCCTGAAAAGTTAATTATCTAATTAAGTAATTAAGATATCAAGAAACGGTCAATTAAAAAAATGTTGGAAATTTCATGGGTTCTAATTTTGTAGTWAACAATTTTTTGATTGCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25607</snp_id>
        <super_contig>c001500619.Contig3</super_contig>
        <contig_pos>169425</contig_pos>
        <strand>+</strand>
        <context>ttttgtagtw[A/T]acaatttttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGGTCAATTAAAAAAATGTTGGAAATTTCATGGGTTCTAATTTTGTAGTA</left_flank>
        <right_flank>ACAATTTTTTGATTGCTTTTTTAGTTTTGGAGATATACGCTGTCAAAGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATCAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATTTTTCGCGCGCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAGCAAATGTTTTTATTCCGAAAAAAAATCAGTTCGATCAAGTTAAAATTGGCACTGATGGCTCCGCCTCTTTTTGACGGCGAACTCTGGAAAAAAACGAACCGATTCGACCAAACAAACCAGTGGCATCCAGCTCATGCATGCCGGCTTCCTGAAAAGTTAATTATCTAATTAAGTAATTAAGATATCAAGAAACGGTCAATTAAAAAAATGTTGGAAATTTCATGGGTTCTAATTTTGTAGTAAACAATTTTTTGATTGCTTTTTTAGTTTTGGAGATATACGCTGTCAAAGTCGGACGATACCAAAAAGACGCAGACAAAGTATAAGCTCTCGCTGAACGTATATATCTCCAAAACTAAGAATGCTATATAAAAACAGCTGACTGCAAAATTGTAGCTCATAAAATTTCCTGCATTTTGCTAGTTAACAAAATTTTGCTAGCATTTTCCGCTTTTGAGATATACGCGCTCAAAATCAGGCGATCCAAAAAAGAGACGCAGACAAGGCATATGCTCTTGCTGAACGCGTTGATCGCCAAAACTAAAATTGCTATCTAAAAATAGTTAATTGCAAAGTTGTAGCTCATAAAATTTCCTACATTTTGCTAGTTAACAAAAATTTCCTAGCGTTTTTCGTTTTCTAGTTATACGCGTTTAAAGCTGACGAGCTCCGAGATCAAGGAGAGACGTAGAGAAGCCATCCGCTCTTATTTCTCTGCGTTTCCCTTTGACTTCTAGGGGTAT</canonical>
            <polymorphic>AAAAATCAGAATTCAATTTCCAGACAATTCCAGACAACTCCAAAAAACTTCCCCATTTATTTGCTTTAAAAAAATTGTGCCAAAATTTTTTTCAACTGTTTTTTTTTCATTTTTCGCGCGCAGACATGCAAATAAATACGCAGAAAGCCTATGCATACAGACAGGAATTAAGCAATGTTTGAGGCGAAAAAACGTCGAGGTGCGAAAGGAGGGAAAAATCATGATACTACTCGACAATCAAACAAGTTGAGGAAAAGCAAATGTTTTTATTCCGAAAAAAAATCAGTTCGATCAAGTTAAAATTGGCACTGATGGCTCCGCCTCTTTTTGACGGCGAACTCTGGAAAAAAACGAACCGATTCGACCAAACAAACCAGTGGCATCCAGCTCATGCATGCCGGCTTCCTGAAAAGTTAATTATCTAATTAAGTAATTAAGATATCAAGAAACGGTCAATTAAAAAAATGTTGGAAATTTCATGGGTTCTAATTTTGTAGTAWACAATTTTTTGATTGCTTTTTTAGTTTTGGAGATATACGCTGTCAAAGTCGGACGATACCAAAAAGACGCAGACAAAGTATAAGCTCTCGCTGAACGTATATATCTCCAAAACTAAGAATGCTATATAAAAACAGCTGACTGCAAAATTGTAGCTCATAAAATTTCCTGCATTTTGCTAGTTAACAAAATTTTGCTAGCATTTTCCGCTTTTGAGATATACGCGCTCAAAATCAGGCGATCCAAAAAAGAGACGCAGACAAGGCATATGCTCTTGCTGAACGCGTTGATCGCCAAAACTAAAATTGCTATCTAAAAATAGTTAATTGCAAAGTTGTAGCTCATAAAATTTCCTACATTTTGCTAGTTAACAAAAATTTCCTAGCGTTTTTCGTTTTCTAGTTATACGCGTTTAAAGCTGACGAGCTCCGAGATCAAGGAGAGACGTAGAGAAGCCATCCGCTCTTATTTCTCTGCGTTTCCCTTTGACTTCTAGGGGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGCTTCCTGAAAAGTTAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATATTCTTAGCTTCGGAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>746</pcr_amplicon_size>
		<canonical_amplicon>CGGCTTCCTGAAAAGTTAATTATCTAATTAAGTAATTAAGATATCAAGAAACGGTCAATTAAAAAAATGTTGGAAATTTCATGGGTTCTAATTTTGTAGTAAACAATTTTTTGATTGCTTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CGGCTTCCTGAAAAGTTAATTATCTAATTAAGTAATTAAGATATCAAGAAACGGTCAATTAAAAAAATGTTGGAAATTTCATGGGTTCTAATTTTGTAGTAWACAATTTTTTGATTGCTTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25608</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>33090</contig_pos>
        <strand>+</strand>
        <context>GTTAAAACTG[C/T]TTTTTTATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCGAATTATTACTGTTTCACTAAAATAATATTATCTAGTTAAAACTG</left_flank>
        <right_flank>TTTTTTATTTCGATTATGATACAATGTCCTTTTCACAGAAAAATTGATAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACAATTTTGGCATTATGATATACGATTTATCAGTTGACAACTTTTCCATATTTTTGACAGAAAGCAAGATAAATTGGGTCAAAGTTTTTCGGTATTCCTTTCAAAAATTTCCTTTTTTCAGCTCAACATTGCTGCTCCAATAGTTCCAGGACCACCGGGCAAGCAAATCAGAAAGATTGAGCCGGACCCAAATAAAGAAAAATCTGATAAATGTACATAAAACGATATTTTTCATCCTAAAAAAATAATTCCAGCGTGTGGAGTCAAAATAGTCGAAGCTGAACGTTCGGATCTGGATCAACCACCTCCAGAACCAGATTTCGTTTTGAATCACGGAGACACAAAAGTCAACAGAATTGAGATCAAAAAAGTTGATTTGGATCTGGTTGGAAGGACTGGAATGTATTTGGAACGTATTGGAATGAGTGCCGAAAGAAAGGTAAACGTTTTTCGAATTATTACTGTTTCACTAAAATAATATTATCTAGTTAAAACTGCTTTTTTATTTCGATTATGATACAATGTCCTTTTCACAGAAAAATTGATAACTTTAGCAATCATTCGACTGGATCGCCTATAATCGTCACGACATGAACAATAAGCAGACGGATTTTTCGAAAAATTTGGCTGCTGCGCTCAGTGATATTGGAATCAACAAGTGAGACAGAAATTATAAGAAAAGTAACAAAAAAAACTACTTCCAGAAATCTTCTAATGCGTACCATAATTTATCTGAAATCCCACGGACAAATCACTCCATCGGAAATGGACAAAGTTCTCAAAGAGATTCAAGCAGTCAAAGGAGAACTTATCAGTTTTTCACAAGTTTCGATTTTCCTCAAAACTCATTGTGAGACTTATCAACAGACTGGAAGCAAAGAAGTCGCTACTTGAGAACTTGAATTTCAATGAATCGTTTGAATAAACTTACAACACTTTTTCCTCTTTTTTCTCTTTCACTTCCTCAGATTCATCAAATTTTCCGGCCATCGCGGATA</canonical>
            <polymorphic>AAACAATTTTGGCATTATGATATACGATTTATCAGTTGACAACTTTTCCATATTTTTGACAGAAAGCAAGATAAATTGGGTCAAAGTTTTTCGGTATTCCTTTCAAAAATTTCCTTTTTTCAGCTCAACATTGCTGCTCCAATAGTTCCAGGACCACCGGGCAAGCAAATCAGAAAGATTGAGCCGGACCCAAATAAAGAAAAATCTGATAAATGTACATAAAACGATATTTTTCATCCTAAAAAAATAATTCCAGCGTGTGGAGTCAAAATAGTCGAAGCTGAACGTTCGGATCTGGATCAACCACCTCCAGAACCAGATTTCGTTTTGAATCACGGAGACACAAAAGTCAACAGAATTGAGATCAAAAAAGTTGATTTGGATCTGGTTGGAAGGACTGGAATGTATTTGGAACGTATTGGAATGAGTGCCGAAAGAAAGGTAAACGTTTTTCGAATTATTACTGTTTCACTAAAATAATATTATCTAGTTAAAACTGYTTTTTTATTTCGATTATGATACAATGTCCTTTTCACAGAAAAATTGATAACTTTAGCAATCATTCGACTGGATCGCCTATAATCGTCACGACATGAACAATAAGCAGACGGATTTTTCGAAAAATTTGGCTGCTGCGCTCAGTGATATTGGAATCAACAAGTGAGACAGAAATTATAAGAAAAGTAACAAAAAAAACTACTTCCAGAAATCTTCTAATGCGTACCATAATTTATCTGAAATCCCACGGACAAATCACTCCATCGGAAATGGACAAAGTTCTCAAAGAGATTCAAGCAGTCAAAGGAGAACTTATCAGTTTTTCACAAGTTTCGATTTTCCTCAAAACTCATTGTGAGACTTATCAACAGACTGGAAGCAAAGAAGTCGCTACTTGAGAACTTGAATTTCAATGAATCGTTTGAATAAACTTACAACACTTTTTCCTCTTTTTTCTCTTTCACTTCCTCAGATTCATCAAATTTTCCGGCCATCGCGGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAACAGAATTGAGATCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GTTCATGTCGTGACGATTATAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCAACAGAATTGAGATCAAAAAAGTTGATTTGGATCTGGTTGGAAGGACTGGAATGTATTTGGAACGTATTGGAATGAGTGCCGAAAGAAAGGTAAACGTTTTTCGAATTATTACTGTTTCACTAAAATAATATTATCTAGTTAAAACTGCTTTTTTATTTCGATTATGATACAATGTCCTTTTCACAGAAAAATTGATAACTTTAGCAATCATTCGACTGGATCGCCTATAATCGTCACGACATGAAC</canonical_amplicon>
		<polymorphic_amplicon>GTCAACAGAATTGAGATCAAAAAAGTTGATTTGGATCTGGTTGGAAGGACTGGAATGTATTTGGAACGTATTGGAATGAGTGCCGAAAGAAAGGTAAACGTTTTTCGAATTATTACTGTTTCACTAAAATAATATTATCTAGTTAAAACTGYTTTTTTATTTCGATTATGATACAATGTCCTTTTCACAGAAAAATTGATAACTTTAGCAATCATTCGACTGGATCGCCTATAATCGTCACGACATGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25609</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>33223</contig_pos>
        <strand>+</strand>
        <context>AATTTGGCTG[C/T]TGCGCTCAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGTCACGACATGAACAATAAGCAGACGGATTTTTCGAAAAATTTGGCTG</left_flank>
        <right_flank>TGCGCTCAGTGATATTGGAATCAACAAGTGAGACAGAAATTATAAGAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGCTCCAATAGTTCCAGGACCACCGGGCAAGCAAATCAGAAAGATTGAGCCGGACCCAAATAAAGAAAAATCTGATAAATGTACATAAAACGATATTTTTCATCCTAAAAAAATAATTCCAGCGTGTGGAGTCAAAATAGTCGAAGCTGAACGTTCGGATCTGGATCAACCACCTCCAGAACCAGATTTCGTTTTGAATCACGGAGACACAAAAGTCAACAGAATTGAGATCAAAAAAGTTGATTTGGATCTGGTTGGAAGGACTGGAATGTATTTGGAACGTATTGGAATGAGTGCCGAAAGAAAGGTAAACGTTTTTCGAATTATTACTGTTTCACTAAAATAATATTATCTAGTTAAAACTGCTTTTTTATTTCGATTATGATACAATGTCCTTTTCACAGAAAAATTGATAACTTTAGCAATCATTCGACTGGATCGCCTATAATCGTCACGACATGAACAATAAGCAGACGGATTTTTCGAAAAATTTGGCTGCTGCGCTCAGTGATATTGGAATCAACAAGTGAGACAGAAATTATAAGAAAAGTAACAAAAAAAACTACTTCCAGAAATCTTCTAATGCGTACCATAATTTATCTGAAATCCCACGGACAAATCACTCCATCGGAAATGGACAAAGTTCTCAAAGAGATTCAAGCAGTCAAAGGAGAACTTATCAGTTTTTCACAAGTTTCGATTTTCCTCAAAACTCATTGTGAGACTTATCAACAGACTGGAAGCAAAGAAGTCGCTACTTGAGAACTTGAATTTCAATGAATCGTTTGAATAAACTTACAACACTTTTTCCTCTTTTTTCTCTTTCACTTCCTCAGATTCATCAAATTTTCCGGCCATCGCGGATACGGTACCAAAACGGCGGGCTTTTTGAGCGGCAACTTTCTGAAAAGGGAAATTGGATTACTTTAGGATACTGTAGGATACCTCATCCGTTGCAACTTTCTTCTTGGCATCTTCATCTTTCATGTTCAGTGCGGA</canonical>
            <polymorphic>CTGCTCCAATAGTTCCAGGACCACCGGGCAAGCAAATCAGAAAGATTGAGCCGGACCCAAATAAAGAAAAATCTGATAAATGTACATAAAACGATATTTTTCATCCTAAAAAAATAATTCCAGCGTGTGGAGTCAAAATAGTCGAAGCTGAACGTTCGGATCTGGATCAACCACCTCCAGAACCAGATTTCGTTTTGAATCACGGAGACACAAAAGTCAACAGAATTGAGATCAAAAAAGTTGATTTGGATCTGGTTGGAAGGACTGGAATGTATTTGGAACGTATTGGAATGAGTGCCGAAAGAAAGGTAAACGTTTTTCGAATTATTACTGTTTCACTAAAATAATATTATCTAGTTAAAACTGCTTTTTTATTTCGATTATGATACAATGTCCTTTTCACAGAAAAATTGATAACTTTAGCAATCATTCGACTGGATCGCCTATAATCGTCACGACATGAACAATAAGCAGACGGATTTTTCGAAAAATTTGGCTGYTGCGCTCAGTGATATTGGAATCAACAAGTGAGACAGAAATTATAAGAAAAGTAACAAAAAAAACTACTTCCAGAAATCTTCTAATGCGTACCATAATTTATCTGAAATCCCACGGACAAATCACTCCATCGGAAATGGACAAAGTTCTCAAAGAGATTCAAGCAGTCAAAGGAGAACTTATCAGTTTTTCACAAGTTTCGATTTTCCTCAAAACTCATTGTGAGACTTATCAACAGACTGGAAGCAAAGAAGTCGCTACTTGAGAACTTGAATTTCAATGAATCGTTTGAATAAACTTACAACACTTTTTCCTCTTTTTTCTCTTTCACTTCCTCAGATTCATCAAATTTTCCGGCCATCGCGGATACGGTACCAAAACGGCGGGCTTTTTGAGCGGCAACTTTCTGAAAAGGGAAATTGGATTACTTTAGGATACTGTAGGATACCTCATCCGTTGCAACTTTCTTCTTGGCATCTTCATCTTTCATGTTCAGTGCGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>499 398 103</canonical_bands>
                <polymorphic_bands>897 103</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATAATCGTCACGACATGAAC</pcr_primer_p1>
		<pcr_primer_p2>GAAAAACTGATAAGTTCTCCTTTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTATAATCGTCACGACATGAACAATAAGCAGACGGATTTTTCGAAAAATTTGGCTGCTGCGCTCAGTGATATTGGAATCAACAAGTGAGACAGAAATTATAAGAAAAGTAACAAAAAAAACTACTTCCAGAAATCTTCTAATGCGTACCATAATTTATCTGAAATCCCACGGACAAATCACTCCATCGGAAATGGACAAAGTTCTCAAAGAGATTCAAGCAGTCAAAGGAGAACTTATCAGTTTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTATAATCGTCACGACATGAACAATAAGCAGACGGATTTTTCGAAAAATTTGGCTGYTGCGCTCAGTGATATTGGAATCAACAAGTGAGACAGAAATTATAAGAAAAGTAACAAAAAAAACTACTTCCAGAAATCTTCTAATGCGTACCATAATTTATCTGAAATCCCACGGACAAATCACTCCATCGGAAATGGACAAAGTTCTCAAAGAGATTCAAGCAGTCAAAGGAGAACTTATCAGTTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25610</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>69469</contig_pos>
        <strand>+</strand>
        <context>CGGGATCTTC[C/T]TGATCCAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTTCTGTAACTCGGAATTCATTCGAAACCATGAAATCAACGGGATCTTC</left_flank>
        <right_flank>TGATCCAAAAAAGCCAACTTTTCGAATGCGATCAGACGTTCCTCGTTAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTTGTTTCATCGACTTCCTGAAGACAAAATTATATTAGAAATTATTTCATTAGGTGTTGCTTACGTTTTTAGGGTGGTTTTCTGAAGGAGACACTGTCTTTGGCTCTTCATTGGTAGTTATCACTGGCGGAGCAGCCTGTTTGCTCTCATTGCTCTTCAAAGAGTCTTCGATAGTCTTGAGGAGACCATAATATGTGATCTGTAAAAACGGAAAATAGTTTAACAAAGAAACTGTGAAAGATAACCCACCAATGCTTTCTCTGCACACTCTCTTGCAAAATTACTTCCATCCAAGCGACACTGTTCAACGGTAGTTTTCAAGTCGTCTATCTTCTGTTTTCTCTCTTTCCATTCGATGACGTCTTCCGCGTAGAGCAGATACTTATCGACAGCAAGCTGTAACATCATATAACTTCGGCGTTGGGCAAGCTTCTACTCACAACTGGGAGTTCTGTAACTCGGAATTCATTCGAAACCATGAAATCAACGGGATCTTCTTGATCCAAAAAAGCCAACTTTTCGAATGCGATCAGACGTTCCTCGTTAGAATATGCCATTTTCATCTGTAACATTATACTTTAACTGATCACCGTACCACGCAAAGCTCACCGCTATCGGTTGTGCTTCCTCCATCTCATCGGCATGTCTCTTGTGATCTCCGATGAACGTGCATCTGGAGCAGAACACTTTTTCATTTGCATAAAACGTCGATGGCTCCTCGTAATTCAATTTCGGCTCGAAGAATCCCGGACATCTTCTGTGACGACAAACGTAGAGAAGCTTATGTGGAACTAGCTCGTGACAGGCGTGGCACTCGGCACTTTTTGCCTTCCACAGCGCTTCTTGTACGGTGGGATCTGGTGCGGGCGCCGGATTCAGATCAACTTGATTGCTGACTTCTTTTTTCGAGAAACAAGGATTTTTGATCATCGGAAACATAACATGATGATCACTGCTCGAACCGACACTTCTGCTTTCACTGCTTACGATTGACATTT</canonical>
            <polymorphic>CAGTTGTTTCATCGACTTCCTGAAGACAAAATTATATTAGAAATTATTTCATTAGGTGTTGCTTACGTTTTTAGGGTGGTTTTCTGAAGGAGACACTGTCTTTGGCTCTTCATTGGTAGTTATCACTGGCGGAGCAGCCTGTTTGCTCTCATTGCTCTTCAAAGAGTCTTCGATAGTCTTGAGGAGACCATAATATGTGATCTGTAAAAACGGAAAATAGTTTAACAAAGAAACTGTGAAAGATAACCCACCAATGCTTTCTCTGCACACTCTCTTGCAAAATTACTTCCATCCAAGCGACACTGTTCAACGGTAGTTTTCAAGTCGTCTATCTTCTGTTTTCTCTCTTTCCATTCGATGACGTCTTCCGCGTAGAGCAGATACTTATCGACAGCAAGCTGTAACATCATATAACTTCGGCGTTGGGCAAGCTTCTACTCACAACTGGGAGTTCTGTAACTCGGAATTCATTCGAAACCATGAAATCAACGGGATCTTCYTGATCCAAAAAAGCCAACTTTTCGAATGCGATCAGACGTTCCTCGTTAGAATATGCCATTTTCATCTGTAACATTATACTTTAACTGATCACCGTACCACGCAAAGCTCACCGCTATCGGTTGTGCTTCCTCCATCTCATCGGCATGTCTCTTGTGATCTCCGATGAACGTGCATCTGGAGCAGAACACTTTTTCATTTGCATAAAACGTCGATGGCTCCTCGTAATTCAATTTCGGCTCGAAGAATCCCGGACATCTTCTGTGACGACAAACGTAGAGAAGCTTATGTGGAACTAGCTCGTGACAGGCGTGGCACTCGGCACTTTTTGCCTTCCACAGCGCTTCTTGTACGGTGGGATCTGGTGCGGGCGCCGGATTCAGATCAACTTGATTGCTGACTTCTTTTTTCGAGAAACAAGGATTTTTGATCATCGGAAACATAACATGATGATCACTGCTCGAACCGACACTTCTGCTTTCACTGCTTACGATTGACATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCAACGGTAGTTTTCAAGTC</pcr_primer_p1>
		<pcr_primer_p2>ATATTCTAACGAGGAACGTCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTCAACGGTAGTTTTCAAGTCGTCTATCTTCTGTTTTCTCTCTTTCCATTCGATGACGTCTTCCGCGTAGAGCAGATACTTATCGACAGCAAGCTGTAACATCATATAACTTCGGCGTTGGGCAAGCTTCTACTCACAACTGGGAGTTCTGTAACTCGGAATTCATTCGAAACCATGAAATCAACGGGATCTTCTTGATCCAAAAAAGCCAACTTTTCGAATGCGATCAGACGTTCCTCGTTAGAATAT</canonical_amplicon>
		<polymorphic_amplicon>GTTCAACGGTAGTTTTCAAGTCGTCTATCTTCTGTTTTCTCTCTTTCCATTCGATGACGTCTTCCGCGTAGAGCAGATACTTATCGACAGCAAGCTGTAACATCATATAACTTCGGCGTTGGGCAAGCTTCTACTCACAACTGGGAGTTCTGTAACTCGGAATTCATTCGAAACCATGAAATCAACGGGATCTTCYTGATCCAAAAAAGCCAACTTTTCGAATGCGATCAGACGTTCCTCGTTAGAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25611</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>69564</contig_pos>
        <strand>+</strand>
        <context>CTGATCACCG[C/T]ACCACGCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTAGAATATGCCATTTTCATCTGTAACATTATACTTTAACTGATCACCG</left_flank>
        <right_flank>ACCACGCAAAGCTCACCGCTATCGGTTGTGCTTCCTCCATCTCATCGGCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTCTTTGGCTCTTCATTGGTAGTTATCACTGGCGGAGCAGCCTGTTTGCTCTCATTGCTCTTCAAAGAGTCTTCGATAGTCTTGAGGAGACCATAATATGTGATCTGTAAAAACGGAAAATAGTTTAACAAAGAAACTGTGAAAGATAACCCACCAATGCTTTCTCTGCACACTCTCTTGCAAAATTACTTCCATCCAAGCGACACTGTTCAACGGTAGTTTTCAAGTCGTCTATCTTCTGTTTTCTCTCTTTCCATTCGATGACGTCTTCCGCGTAGAGCAGATACTTATCGACAGCAAGCTGTAACATCATATAACTTCGGCGTTGGGCAAGCTTCTACTCACAACTGGGAGTTCTGTAACTCGGAATTCATTCGAAACCATGAAATCAACGGGATCTTCTTGATCCAAAAAAGCCAACTTTTCGAATGCGATCAGACGTTCCTCGTTAGAATATGCCATTTTCATCTGTAACATTATACTTTAACTGATCACCGTACCACGCAAAGCTCACCGCTATCGGTTGTGCTTCCTCCATCTCATCGGCATGTCTCTTGTGATCTCCGATGAACGTGCATCTGGAGCAGAACACTTTTTCATTTGCATAAAACGTCGATGGCTCCTCGTAATTCAATTTCGGCTCGAAGAATCCCGGACATCTTCTGTGACGACAAACGTAGAGAAGCTTATGTGGAACTAGCTCGTGACAGGCGTGGCACTCGGCACTTTTTGCCTTCCACAGCGCTTCTTGTACGGTGGGATCTGGTGCGGGCGCCGGATTCAGATCAACTTGATTGCTGACTTCTTTTTTCGAGAAACAAGGATTTTTGATCATCGGAAACATAACATGATGATCACTGCTCGAACCGACACTTCTGCTTTCACTGCTTACGATTGACATTTTTATCTGCGAAAAAAAAGAAGTTGAGAGTGTTACGAATTATGAGAGTAATAATACAGAAGGAATTTGAAAAAGCAGAGAAATTGTATTATACTTA</canonical>
            <polymorphic>CTGTCTTTGGCTCTTCATTGGTAGTTATCACTGGCGGAGCAGCCTGTTTGCTCTCATTGCTCTTCAAAGAGTCTTCGATAGTCTTGAGGAGACCATAATATGTGATCTGTAAAAACGGAAAATAGTTTAACAAAGAAACTGTGAAAGATAACCCACCAATGCTTTCTCTGCACACTCTCTTGCAAAATTACTTCCATCCAAGCGACACTGTTCAACGGTAGTTTTCAAGTCGTCTATCTTCTGTTTTCTCTCTTTCCATTCGATGACGTCTTCCGCGTAGAGCAGATACTTATCGACAGCAAGCTGTAACATCATATAACTTCGGCGTTGGGCAAGCTTCTACTCACAACTGGGAGTTCTGTAACTCGGAATTCATTCGAAACCATGAAATCAACGGGATCTTCTTGATCCAAAAAAGCCAACTTTTCGAATGCGATCAGACGTTCCTCGTTAGAATATGCCATTTTCATCTGTAACATTATACTTTAACTGATCACCGYACCACGCAAAGCTCACCGCTATCGGTTGTGCTTCCTCCATCTCATCGGCATGTCTCTTGTGATCTCCGATGAACGTGCATCTGGAGCAGAACACTTTTTCATTTGCATAAAACGTCGATGGCTCCTCGTAATTCAATTTCGGCTCGAAGAATCCCGGACATCTTCTGTGACGACAAACGTAGAGAAGCTTATGTGGAACTAGCTCGTGACAGGCGTGGCACTCGGCACTTTTTGCCTTCCACAGCGCTTCTTGTACGGTGGGATCTGGTGCGGGCGCCGGATTCAGATCAACTTGATTGCTGACTTCTTTTTTCGAGAAACAAGGATTTTTGATCATCGGAAACATAACATGATGATCACTGCTCGAACCGACACTTCTGCTTTCACTGCTTACGATTGACATTTTTATCTGCGAAAAAAAAGAAGTTGAGAGTGTTACGAATTATGAGAGTAATAATACAGAAGGAATTTGAAAAAGCAGAGAAATTGTATTATACTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 254 246</canonical_bands>
                <polymorphic_bands>754 246</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>281 259 243 140 69 8</canonical_bands>
                <polymorphic_bands>540 243 140 69 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACGTTCCTCGTTAGAATATG</pcr_primer_p1>
		<pcr_primer_p2>CTTCTCTACGTTTGTCGTCAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGACGTTCCTCGTTAGAATATGCCATTTTCATCTGTAACATTATACTTTAACTGATCACCGTACCACGCAAAGCTCACCGCTATCGGTTGTGCTTCCTCCATCTCATCGGCATGTCTCTTGTGATCTCCGATGAACGTGCATCTGGAGCAGAACACTTTTTCATTTGCATAAAACGTCGATGGCTCCTCGTAATTCAATTTCGGCTCGAAGAATCCCGGACATCTTCTGTGACGACAAACGTAGAGAAG</canonical_amplicon>
		<polymorphic_amplicon>AGACGTTCCTCGTTAGAATATGCCATTTTCATCTGTAACATTATACTTTAACTGATCACCGYACCACGCAAAGCTCACCGCTATCGGTTGTGCTTCCTCCATCTCATCGGCATGTCTCTTGTGATCTCCGATGAACGTGCATCTGGAGCAGAACACTTTTTCATTTGCATAAAACGTCGATGGCTCCTCGTAATTCAATTTCGGCTCGAAGAATCCCGGACATCTTCTGTGACGACAAACGTAGAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25612</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>69689</contig_pos>
        <strand>+</strand>
        <context>TCGATGGCTC[A/C]TCGTAATTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTGCATCTGGAGCAGAACACTTTTTCATTTGCATAAAACGTCGATGGCTC</left_flank>
        <right_flank>TCGTAATTCAATTTCGGCTCGAAGAATCCCGGACATCTTCTGTGACGACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAACAAAGAAACTGTGAAAGATAACCCACCAATGCTTTCTCTGCACACTCTCTTGCAAAATTACTTCCATCCAAGCGACACTGTTCAACGGTAGTTTTCAAGTCGTCTATCTTCTGTTTTCTCTCTTTCCATTCGATGACGTCTTCCGCGTAGAGCAGATACTTATCGACAGCAAGCTGTAACATCATATAACTTCGGCGTTGGGCAAGCTTCTACTCACAACTGGGAGTTCTGTAACTCGGAATTCATTCGAAACCATGAAATCAACGGGATCTTCTTGATCCAAAAAAGCCAACTTTTCGAATGCGATCAGACGTTCCTCGTTAGAATATGCCATTTTCATCTGTAACATTATACTTTAACTGATCACCGTACCACGCAAAGCTCACCGCTATCGGTTGTGCTTCCTCCATCTCATCGGCATGTCTCTTGTGATCTCCGATGAACGTGCATCTGGAGCAGAACACTTTTTCATTTGCATAAAACGTCGATGGCTCCTCGTAATTCAATTTCGGCTCGAAGAATCCCGGACATCTTCTGTGACGACAAACGTAGAGAAGCTTATGTGGAACTAGCTCGTGACAGGCGTGGCACTCGGCACTTTTTGCCTTCCACAGCGCTTCTTGTACGGTGGGATCTGGTGCGGGCGCCGGATTCAGATCAACTTGATTGCTGACTTCTTTTTTCGAGAAACAAGGATTTTTGATCATCGGAAACATAACATGATGATCACTGCTCGAACCGACACTTCTGCTTTCACTGCTTACGATTGACATTTTTATCTGCGAAAAAAAAGAAGTTGAGAGTGTTACGAATTATGAGAGTAATAATACAGAAGGAATTTGAAAAAGCAGAGAAATTGTATTATACTTATGCAAGCCAAAAATTAGCTTCTGTACGATTTAATTGCTCGAAGCGGCTGAACATTCTCTCTAGAAGCTTGGGCGGAAAATACGGGAGGAAAACATTGAAAATTCGATAATTTTGTTAGCTGAAAT</canonical>
            <polymorphic>TTTAACAAAGAAACTGTGAAAGATAACCCACCAATGCTTTCTCTGCACACTCTCTTGCAAAATTACTTCCATCCAAGCGACACTGTTCAACGGTAGTTTTCAAGTCGTCTATCTTCTGTTTTCTCTCTTTCCATTCGATGACGTCTTCCGCGTAGAGCAGATACTTATCGACAGCAAGCTGTAACATCATATAACTTCGGCGTTGGGCAAGCTTCTACTCACAACTGGGAGTTCTGTAACTCGGAATTCATTCGAAACCATGAAATCAACGGGATCTTCTTGATCCAAAAAAGCCAACTTTTCGAATGCGATCAGACGTTCCTCGTTAGAATATGCCATTTTCATCTGTAACATTATACTTTAACTGATCACCGTACCACGCAAAGCTCACCGCTATCGGTTGTGCTTCCTCCATCTCATCGGCATGTCTCTTGTGATCTCCGATGAACGTGCATCTGGAGCAGAACACTTTTTCATTTGCATAAAACGTCGATGGCTCMTCGTAATTCAATTTCGGCTCGAAGAATCCCGGACATCTTCTGTGACGACAAACGTAGAGAAGCTTATGTGGAACTAGCTCGTGACAGGCGTGGCACTCGGCACTTTTTGCCTTCCACAGCGCTTCTTGTACGGTGGGATCTGGTGCGGGCGCCGGATTCAGATCAACTTGATTGCTGACTTCTTTTTTCGAGAAACAAGGATTTTTGATCATCGGAAACATAACATGATGATCACTGCTCGAACCGACACTTCTGCTTTCACTGCTTACGATTGACATTTTTATCTGCGAAAAAAAAGAAGTTGAGAGTGTTACGAATTATGAGAGTAATAATACAGAAGGAATTTGAAAAAGCAGAGAAATTGTATTATACTTATGCAAGCCAAAAATTAGCTTCTGTACGATTTAATTGCTCGAAGCGGCTGAACATTCTCTCTAGAAGCTTGGGCGGAAAATACGGGAGGAAAACATTGAAAATTCGATAATTTTGTTAGCTGAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>497 350 153</canonical_bands>
                <polymorphic_bands>650 350</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATATGCCATTTTCATCTGTAAC</pcr_primer_p1>
		<pcr_primer_p2>CACATAAGCTTCTCTACGTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>AATATGCCATTTTCATCTGTAACATTATACTTTAACTGATCACCGTACCACGCAAAGCTCACCGCTATCGGTTGTGCTTCCTCCATCTCATCGGCATGTCTCTTGTGATCTCCGATGAACGTGCATCTGGAGCAGAACACTTTTTCATTTGCATAAAACGTCGATGGCTCCTCGTAATTCAATTTCGGCTCGAAGAATCCCGGACATCTTCTGTGACGACAAACGTAGAGAAGCTTATGTG</canonical_amplicon>
		<polymorphic_amplicon>AATATGCCATTTTCATCTGTAACATTATACTTTAACTGATCACCGTACCACGCAAAGCTCACCGCTATCGGTTGTGCTTCCTCCATCTCATCGGCATGTCTCTTGTGATCTCCGATGAACGTGCATCTGGAGCAGAACACTTTTTCATTTGCATAAAACGTCGATGGCTCMTCGTAATTCAATTTCGGCTCGAAGAATCCCGGACATCTTCTGTGACGACAAACGTAGAGAAGCTTATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25613</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>69888</contig_pos>
        <strand>+</strand>
        <context>CGAGAAACAA[C/G]GATTTTTGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCGCCGGATTCAGATCAACTTGATTGCTGACTTCTTTTTTCGAGAAACAA</left_flank>
        <right_flank>GATTTTTGATCATCGGAAACATAACATGATGATCACTGCTCGAACCGACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGTTGGGCAAGCTTCTACTCACAACTGGGAGTTCTGTAACTCGGAATTCATTCGAAACCATGAAATCAACGGGATCTTCTTGATCCAAAAAAGCCAACTTTTCGAATGCGATCAGACGTTCCTCGTTAGAATATGCCATTTTCATCTGTAACATTATACTTTAACTGATCACCGTACCACGCAAAGCTCACCGCTATCGGTTGTGCTTCCTCCATCTCATCGGCATGTCTCTTGTGATCTCCGATGAACGTGCATCTGGAGCAGAACACTTTTTCATTTGCATAAAACGTCGATGGCTCCTCGTAATTCAATTTCGGCTCGAAGAATCCCGGACATCTTCTGTGACGACAAACGTAGAGAAGCTTATGTGGAACTAGCTCGTGACAGGCGTGGCACTCGGCACTTTTTGCCTTCCACAGCGCTTCTTGTACGGTGGGATCTGGTGCGGGCGCCGGATTCAGATCAACTTGATTGCTGACTTCTTTTTTCGAGAAACAAGGATTTTTGATCATCGGAAACATAACATGATGATCACTGCTCGAACCGACACTTCTGCTTTCACTGCTTACGATTGACATTTTTATCTGCGAAAAAAAAGAAGTTGAGAGTGTTACGAATTATGAGAGTAATAATACAGAAGGAATTTGAAAAAGCAGAGAAATTGTATTATACTTATGCAAGCCAAAAATTAGCTTCTGTACGATTTAATTGCTCGAAGCGGCTGAACATTCTCTCTAGAAGCTTGGGCGGAAAATACGGGAGGAAAACATTGAAAATTCGATAATTTTGTTAGCTGAAATCTAACGAAAACATCGGAAGTTAGCTGAAACTCGCCGTGAAAACTGTCTGGAAACCGAAGATGACTCGAAAAGTTCAATTTCAAAGTGCTTGTGTTTGCGTATTTTCGCCGTTGCTTACCGTAGCCATGAAAGTAAAAACACACTTTTATAACAACACAAGTAATTTATTTCGTTGCTTAATTCGGTTATTAAATAGAAA</canonical>
            <polymorphic>GCGTTGGGCAAGCTTCTACTCACAACTGGGAGTTCTGTAACTCGGAATTCATTCGAAACCATGAAATCAACGGGATCTTCTTGATCCAAAAAAGCCAACTTTTCGAATGCGATCAGACGTTCCTCGTTAGAATATGCCATTTTCATCTGTAACATTATACTTTAACTGATCACCGTACCACGCAAAGCTCACCGCTATCGGTTGTGCTTCCTCCATCTCATCGGCATGTCTCTTGTGATCTCCGATGAACGTGCATCTGGAGCAGAACACTTTTTCATTTGCATAAAACGTCGATGGCTCCTCGTAATTCAATTTCGGCTCGAAGAATCCCGGACATCTTCTGTGACGACAAACGTAGAGAAGCTTATGTGGAACTAGCTCGTGACAGGCGTGGCACTCGGCACTTTTTGCCTTCCACAGCGCTTCTTGTACGGTGGGATCTGGTGCGGGCGCCGGATTCAGATCAACTTGATTGCTGACTTCTTTTTTCGAGAAACAASGATTTTTGATCATCGGAAACATAACATGATGATCACTGCTCGAACCGACACTTCTGCTTTCACTGCTTACGATTGACATTTTTATCTGCGAAAAAAAAGAAGTTGAGAGTGTTACGAATTATGAGAGTAATAATACAGAAGGAATTTGAAAAAGCAGAGAAATTGTATTATACTTATGCAAGCCAAAAATTAGCTTCTGTACGATTTAATTGCTCGAAGCGGCTGAACATTCTCTCTAGAAGCTTGGGCGGAAAATACGGGAGGAAAACATTGAAAATTCGATAATTTTGTTAGCTGAAATCTAACGAAAACATCGGAAGTTAGCTGAAACTCGCCGTGAAAACTGTCTGGAAACCGAAGATGACTCGAAAAGTTCAATTTCAAAGTGCTTGTGTTTGCGTATTTTCGCCGTTGCTTACCGTAGCCATGAAAGTAAAAACACACTTTTATAACAACACAAGTAATTTATTTCGTTGCTTAATTCGGTTATTAAATAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATCTTCTGTGACGACAAAC</pcr_primer_p1>
		<pcr_primer_p2>TAAAAATGTCAATCGTAAGCAGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACATCTTCTGTGACGACAAACGTAGAGAAGCTTATGTGGAACTAGCTCGTGACAGGCGTGGCACTCGGCACTTTTTGCCTTCCACAGCGCTTCTTGTACGGTGGGATCTGGTGCGGGCGCCGGATTCAGATCAACTTGATTGCTGACTTCTTTTTTCGAGAAACAAGGATTTTTGATCATCGGAAACATAACATGATGATCACTGCTCGAACCGACACTTCTGCTTTCACTGCTTACGATTGACATTTTTA</canonical_amplicon>
		<polymorphic_amplicon>ACATCTTCTGTGACGACAAACGTAGAGAAGCTTATGTGGAACTAGCTCGTGACAGGCGTGGCACTCGGCACTTTTTGCCTTCCACAGCGCTTCTTGTACGGTGGGATCTGGTGCGGGCGCCGGATTCAGATCAACTTGATTGCTGACTTCTTTTTTCGAGAAACAASGATTTTTGATCATCGGAAACATAACATGATGATCACTGCTCGAACCGACACTTCTGCTTTCACTGCTTACGATTGACATTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25614</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>69920</contig_pos>
        <strand></strand>
        <context>TAACATGATG[A/C]TCACTGCTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTTTTTTCGAGAAACAAGGATTTTTGATCATCGGAAACATAACATGATG</left_flank>
        <right_flank>TCACTGCTCGAACCGACACTTCTGCTTTCACTGCTTACGATTGACATTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGTAACTCGGAATTCATTCGAAACCATGAAATCAACGGGATCTTCTTGATCCAAAAAAGCCAACTTTTCGAATGCGATCAGACGTTCCTCGTTAGAATATGCCATTTTCATCTGTAACATTATACTTTAACTGATCACCGTACCACGCAAAGCTCACCGCTATCGGTTGTGCTTCCTCCATCTCATCGGCATGTCTCTTGTGATCTCCGATGAACGTGCATCTGGAGCAGAACACTTTTTCATTTGCATAAAACGTCGATGGCTCCTCGTAATTCAATTTCGGCTCGAAGAATCCCGGACATCTTCTGTGACGACAAACGTAGAGAAGCTTATGTGGAACTAGCTCGTGACAGGCGTGGCACTCGGCACTTTTTGCCTTCCACAGCGCTTCTTGTACGGTGGGATCTGGTGCGGGCGCCGGATTCAGATCAACTTGATTGCTGACTTCTTTTTTCGAGAAACAAGGATTTTTGATCATCGGAAACATAACATGATGATCACTGCTCGAACCGACACTTCTGCTTTCACTGCTTACGATTGACATTTTTATCTGCGAAAAAAAAGAAGTTGAGAGTGTTACGAATTATGAGAGTAATAATACAGAAGGAATTTGAAAAAGCAGAGAAATTGTATTATACTTATGCAAGCCAAAAATTAGCTTCTGTACGATTTAATTGCTCGAAGCGGCTGAACATTCTCTCTAGAAGCTTGGGCGGAAAATACGGGAGGAAAACATTGAAAATTCGATAATTTTGTTAGCTGAAATCTAACGAAAACATCGGAAGTTAGCTGAAACTCGCCGTGAAAACTGTCTGGAAACCGAAGATGACTCGAAAAGTTCAATTTCAAAGTGCTTGTGTTTGCGTATTTTCGCCGTTGCTTACCGTAGCCATGAAAGTAAAAACACACTTTTATAACAACACAAGTAATTTATTTCGTTGCTTAATTCGGTTATTAAATAGAAATGCTCATATAATTTAGGGCTTAAACATTCAAA</canonical>
            <polymorphic>TTCTGTAACTCGGAATTCATTCGAAACCATGAAATCAACGGGATCTTCTTGATCCAAAAAAGCCAACTTTTCGAATGCGATCAGACGTTCCTCGTTAGAATATGCCATTTTCATCTGTAACATTATACTTTAACTGATCACCGTACCACGCAAAGCTCACCGCTATCGGTTGTGCTTCCTCCATCTCATCGGCATGTCTCTTGTGATCTCCGATGAACGTGCATCTGGAGCAGAACACTTTTTCATTTGCATAAAACGTCGATGGCTCCTCGTAATTCAATTTCGGCTCGAAGAATCCCGGACATCTTCTGTGACGACAAACGTAGAGAAGCTTATGTGGAACTAGCTCGTGACAGGCGTGGCACTCGGCACTTTTTGCCTTCCACAGCGCTTCTTGTACGGTGGGATCTGGTGCGGGCGCCGGATTCAGATCAACTTGATTGCTGACTTCTTTTTTCGAGAAACAAGGATTTTTGATCATCGGAAACATAACATGATGMTCACTGCTCGAACCGACACTTCTGCTTTCACTGCTTACGATTGACATTTTTATCTGCGAAAAAAAAGAAGTTGAGAGTGTTACGAATTATGAGAGTAATAATACAGAAGGAATTTGAAAAAGCAGAGAAATTGTATTATACTTATGCAAGCCAAAAATTAGCTTCTGTACGATTTAATTGCTCGAAGCGGCTGAACATTCTCTCTAGAAGCTTGGGCGGAAAATACGGGAGGAAAACATTGAAAATTCGATAATTTTGTTAGCTGAAATCTAACGAAAACATCGGAAGTTAGCTGAAACTCGCCGTGAAAACTGTCTGGAAACCGAAGATGACTCGAAAAGTTCAATTTCAAAGTGCTTGTGTTTGCGTATTTTCGCCGTTGCTTACCGTAGCCATGAAAGTAAAAACACACTTTTATAACAACACAAGTAATTTATTTCGTTGCTTAATTCGGTTATTAAATAGAAATGCTCATATAATTTAGGGCTTAAACATTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>502 340 135 23</canonical_bands>
                <polymorphic_bands>525 340 135</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>502 201 69 57 46 41 28 24 23 9</canonical_bands>
                <polymorphic_bands>525 201 69 57 46 41 28 24 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTTGATTGCTGACTTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>GCAATTAAATCGTACAGAAGCTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AACTTGATTGCTGACTTCTTTTTTCGAGAAACAAGGATTTTTGATCATCGGAAACATAACATGATGATCACTGCTCGAACCGACACTTCTGCTTTCACTGCTTACGATTGACATTTTTATCTGCGAAAAAAAAGAAGTTGAGAGTGTTACGAATTATGAGAGTAATAATACAGAAGGAATTTGAAAAAGCAGAGAAATTGTATTATACTTATGCAAGCCAAAAATTAGCTTCTGTACGATTTAATTGC</canonical_amplicon>
		<polymorphic_amplicon>AACTTGATTGCTGACTTCTTTTTTCGAGAAACAAGGATTTTTGATCATCGGAAACATAACATGATGMTCACTGCTCGAACCGACACTTCTGCTTTCACTGCTTACGATTGACATTTTTATCTGCGAAAAAAAAGAAGTTGAGAGTGTTACGAATTATGAGAGTAATAATACAGAAGGAATTTGAAAAAGCAGAGAAATTGTATTATACTTATGCAAGCCAAAAATTAGCTTCTGTACGATTTAATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25615</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>71343</contig_pos>
        <strand>+</strand>
        <context>AAAATCGCCG[A/C]CCGCCGATCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTCAACTGTCTGCGTTAAGGCTTCCATTTCGGTCGGTCGAAAATCGCCG</left_flank>
        <right_flank>CCGCCGATCAAAACGCGAATTTTTGCGTACGAAGCACTTTATTTTACGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGACACCTTTGCCGACGCCTTCAACAACAACCTCATTCTGTTGCTCCTCTTCCTCATCCGGATTGGTCCCATCCTCACCCACTTCTTCCTCATTGTCCAGTCCTTCATCTCCAACGTCTTCTTCCTCTTCTTCCAACTGCTCCTCATGCTCCAATCCGCTGAGCTCCTGCTTCTCTTCATTCTCCTCATCGCTAGCTTCATCGTCCTCTTGAACTTCGTACGTCTTCATAACTTTGGCTTGTGGTCCAGATGGACGAGCCGGCGGAATGTGTTCTCTCTTGCGGCCAGAGACGGAATCTGTAAATTATTCAGATAAACGCTTGTTTATTATTATTGTTGTCCGAAAAATTGGAGTTAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGAAGCGGCAAGCCTAAATAGCACATACTCGGTGGAGACGCAGAGAAATTTTTTGTTCAACTGTCTGCGTTAAGGCTTCCATTTCGGTCGGTCGAAAATCGCCGACCGCCGATCAAAACGCGAATTTTTGCGTACGAAGCACTTTATTTTACGACAAACGAGGCATTTAGTGAGTAGTTTGTCGTAAAATACAATGCAGAGTATGCAAACACGTTGATGCGCAAATGCACGAAAACGGTCGGCGCGCCGACCGATCGGTCAGTTCGGTCGGCTATCGGTCGGCGGGGTCGGTGGTCGGTCGGTCGGCTAAATTTCCCGACCGAATGGAAGCCTTAGTCTGTGTCTCGACTCCAATTTTTTCGCACAACCATAATAGAAAGAAGAGCATACCATTAGTTGCTTTCGTGGCACCTGGCACGGACAAGTAAGCTCCCATTGTTCTGAAGAAATGATAGTAGAAAAAGTTACACAGTGATATACAGTGATACAGTGATGTATGTAAAAGTACAATAGCGAGGACTTGAAACCTCGTTAGTAAAAGAGAAAGCAAAACCATATTAAAAATGAATACTTTCAATAAGTGAAATTTTCTAAAGAGACTTTCT</canonical>
            <polymorphic>ACGACACCTTTGCCGACGCCTTCAACAACAACCTCATTCTGTTGCTCCTCTTCCTCATCCGGATTGGTCCCATCCTCACCCACTTCTTCCTCATTGTCCAGTCCTTCATCTCCAACGTCTTCTTCCTCTTCTTCCAACTGCTCCTCATGCTCCAATCCGCTGAGCTCCTGCTTCTCTTCATTCTCCTCATCGCTAGCTTCATCGTCCTCTTGAACTTCGTACGTCTTCATAACTTTGGCTTGTGGTCCAGATGGACGAGCCGGCGGAATGTGTTCTCTCTTGCGGCCAGAGACGGAATCTGTAAATTATTCAGATAAACGCTTGTTTATTATTATTGTTGTCCGAAAAATTGGAGTTAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGAAGCGGCAAGCCTAAATAGCACATACTCGGTGGAGACGCAGAGAAATTTTTTGTTCAACTGTCTGCGTTAAGGCTTCCATTTCGGTCGGTCGAAAATCGCCGMCCGCCGATCAAAACGCGAATTTTTGCGTACGAAGCACTTTATTTTACGACAAACGAGGCATTTAGTGAGTAGTTTGTCGTAAAATACAATGCAGAGTATGCAAACACGTTGATGCGCAAATGCACGAAAACGGTCGGCGCGCCGACCGATCGGTCAGTTCGGTCGGCTATCGGTCGGCGGGGTCGGTGGTCGGTCGGTCGGCTAAATTTCCCGACCGAATGGAAGCCTTAGTCTGTGTCTCGACTCCAATTTTTTCGCACAACCATAATAGAAAGAAGAGCATACCATTAGTTGCTTTCGTGGCACCTGGCACGGACAAGTAAGCTCCCATTGTTCTGAAGAAATGATAGTAGAAAAAGTTACACAGTGATATACAGTGATACAGTGATGTATGTAAAAGTACAATAGCGAGGACTTGAAACCTCGTTAGTAAAAGAGAAAGCAAAACCATATTAAAAATGAATACTTTCAATAAGTGAAATTTTCTAAAGAGACTTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>483 285 133 20 17 14 13 12 11 4 4 4</canonical_bands>
                <polymorphic_bands>483 285 147 20 17 13 12 11 4 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTATTCAGATAAACGCTTGTT</pcr_primer_p1>
		<pcr_primer_p2>CTCGTTTGTCGTAAAATAAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>AAATTATTCAGATAAACGCTTGTTTATTATTATTGTTGTCCGAAAAATTGGAGTTAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGAAGCGGCAAGCCTAAATAGCACATACTCGGTGGAGACGCAGAGAAATTTTTTGTTCAACTGTCTGCGTTAAGGCTTCCATTTCGGTCGGTCGAAAATCGCCGACCGCCGATCAAAACGCGAATTTTTGCGTACGAAGCACTTTATTTTACGACAAACGAG</canonical_amplicon>
		<polymorphic_amplicon>AAATTATTCAGATAAACGCTTGTTTATTATTATTGTTGTCCGAAAAATTGGAGTTAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGAAGCGGCAAGCCTAAATAGCACATACTCGGTGGAGACGCAGAGAAATTTTTTGTTCAACTGTCTGCGTTAAGGCTTCCATTTCGGTCGGTCGAAAATCGCCGMCCGCCGATCAAAACGCGAATTTTTGCGTACGAAGCACTTTATTTTACGACAAACGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25616</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>71607</contig_pos>
        <strand></strand>
        <context>ttcgcacaac[C/A]ataatAGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ACCGAATGGAAGCCTTAGTCTGTGTCTCGACTCCAATTTTTTCGCACAAC</left_flank>
        <right_flank>ATAATAGAAAGAAGAGCATACCATTAGTTGCTTTCGTGGCACCTGGCACG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAATGTGTTCTCTCTTGCGGCCAGAGACGGAATCTGTAAATTATTCAGATAAACGCTTGTTTATTATTATTGTTGTCCGAAAAATTGGAGTTAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGAAGCGGCAAGCCTAAATAGCACATACTCGGTGGAGACGCAGAGAAATTTTTTGTTCAACTGTCTGCGTTAAGGCTTCCATTTCGGTCGGTCGAAAATCGCCGACCGCCGATCAAAACGCGAATTTTTGCGTACGAAGCACTTTATTTTACGACAAACGAGGCATTTAGTGAGTAGTTTGTCGTAAAATACAATGCAGAGTATGCAAACACGTTGATGCGCAAATGCACGAAAACGGTCGGCGCGCCGACCGATCGGTCAGTTCGGTCGGCTATCGGTCGGCGGGGTCGGTGGTCGGTCGGTCGGCTAAATTTCCCGACCGAATGGAAGCCTTAGTCTGTGTCTCGACTCCAATTTTTTCGCACAACCATAATAGAAAGAAGAGCATACCATTAGTTGCTTTCGTGGCACCTGGCACGGACAAGTAAGCTCCCATTGTTCTGAAGAAATGATAGTAGAAAAAGTTACACAGTGATATACAGTGATACAGTGATGTATGTAAAAGTACAATAGCGAGGACTTGAAACCTCGTTAGTAAAAGAGAAAGCAAAACCATATTAAAAATGAATACTTTCAATAAGTGAAATTTTCTAAAGAGACTTTCTCAAAATCACATGGGACTGAATGGAGATCGAAGTATCAAAAATAAATACGGAAACATTATACTTCGTTTTGCAAATGGGGAAATACGAACAGTTCGAAATGATTGTACAGGAAGAGGAAGAGCGAAAAAAAAAGAAGATAGAGAGAGTGTGAATGAGGGATCACGAGAGGAGCCATGAGAAAAAAGTAGAGAACGAACAAATAGAGAGAAATGTAATGTGGAGGTCAGTTTTTTTTTAAAGAACAGGTTGAGTCATGGTCAACGA</canonical>
            <polymorphic>GGAATGTGTTCTCTCTTGCGGCCAGAGACGGAATCTGTAAATTATTCAGATAAACGCTTGTTTATTATTATTGTTGTCCGAAAAATTGGAGTTAGAGAGTATTTTTCGCAGTCTGAATACGGTAGGCACCTCGAAGCGGCAAGCCTAAATAGCACATACTCGGTGGAGACGCAGAGAAATTTTTTGTTCAACTGTCTGCGTTAAGGCTTCCATTTCGGTCGGTCGAAAATCGCCGACCGCCGATCAAAACGCGAATTTTTGCGTACGAAGCACTTTATTTTACGACAAACGAGGCATTTAGTGAGTAGTTTGTCGTAAAATACAATGCAGAGTATGCAAACACGTTGATGCGCAAATGCACGAAAACGGTCGGCGCGCCGACCGATCGGTCAGTTCGGTCGGCTATCGGTCGGCGGGGTCGGTGGTCGGTCGGTCGGCTAAATTTCCCGACCGAATGGAAGCCTTAGTCTGTGTCTCGACTCCAATTTTTTCGCACAACMATAATAGAAAGAAGAGCATACCATTAGTTGCTTTCGTGGCACCTGGCACGGACAAGTAAGCTCCCATTGTTCTGAAGAAATGATAGTAGAAAAAGTTACACAGTGATATACAGTGATACAGTGATGTATGTAAAAGTACAATAGCGAGGACTTGAAACCTCGTTAGTAAAAGAGAAAGCAAAACCATATTAAAAATGAATACTTTCAATAAGTGAAATTTTCTAAAGAGACTTTCTCAAAATCACATGGGACTGAATGGAGATCGAAGTATCAAAAATAAATACGGAAACATTATACTTCGTTTTGCAAATGGGGAAATACGAACAGTTCGAAATGATTGTACAGGAAGAGGAAGAGCGAAAAAAAAAGAAGATAGAGAGAGTGTGAATGAGGGATCACGAGAGGAGCCATGAGAAAAAAGTAGAGAACGAACAAATAGAGAGAAATGTAATGTGGAGGTCAGTTTTTTTTTAAAGAACAGGTTGAGTCATGGTCAACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGTATGCAAACACGTTGAT</pcr_primer_p1>
		<pcr_primer_p2>CAGAACAATGGGAGCTTACTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAGTATGCAAACACGTTGATGCGCAAATGCACGAAAACGGTCGGCGCGCCGACCGATCGGTCAGTTCGGTCGGCTATCGGTCGGCGGGGTCGGTGGTCGGTCGGTCGGCTAAATTTCCCGACCGAATGGAAGCCTTAGTCTGTGTCTCGACTCCAATTTTTTCGCACAACCATAATAGAAAGAAGAGCATACCATTAGTTGCTTTCGTGGCACCTGGCACGGACAAGTAAGCTCCCATTGTTCTG</canonical_amplicon>
		<polymorphic_amplicon>AGAGTATGCAAACACGTTGATGCGCAAATGCACGAAAACGGTCGGCGCGCCGACCGATCGGTCAGTTCGGTCGGCTATCGGTCGGCGGGGTCGGTGGTCGGTCGGTCGGCTAAATTTCCCGACCGAATGGAAGCCTTAGTCTGTGTCTCGACTCCAATTTTTTCGCACAACMATAATAGAAAGAAGAGCATACCATTAGTTGCTTTCGTGGCACCTGGCACGGACAAGTAAGCTCCCATTGTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25617</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>112578</contig_pos>
        <strand>+</strand>
        <context>TTGTGAAAAA[A/C]TYTAAATTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGATAAAGAATCAGAAAAGATCCTATTCTTTCTAGAAAGTTTGTGAAAAA</left_flank>
        <right_flank>TTTAAATTCTTCGCTGGTCCTTCAAAATTTCAGATTTTCGAAGAATGTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATTTCCTGTCGAAGATACCAAAAAGTGGTCAACTGACTAAATATTGGTTATAATAACACAAATATTTTGTTAGTTGATCATGTTTTTGTATCTTCTATAGGAAATGAGATATGTGGGCTCAAAGTTGGCCGCTTGGTGGGCGTCCTATAGAGTGTTTACGGTATATGAAGCTTGAAATTGTAGTTCTAAAAGTTTTCTGTTTTAGTGACTCTATTTAAAAACGATACTAGTCAAAACTTGAATGAAATACATTTCGGATAATAAGAAAAAAAAATGCATTTTCCCGATCAAATTTTCGTTTTCTTACAGTTGCCATCTATAGAAATACATGTCTAAAATTGTTCTGAAAGTTTTTCTGTTTCAAAAGTTGTTCAAACTTTTCGATTTCAATAACTCAATGATTCAATCCGTTGTTCTTCCGAAACTCAAACATTTGAATAAATTTTCTGATAAAGAATCAGAAAAGATCCTATTCTTTCTAGAAAGTTTGTGAAAAAATTTAAATTCTTCGCTGGTCCTTCAAAATTTCAGATTTTCGAAGAATGTTGAGATCTGATTTTGAGTAAAACCGATACTGACAACAAAGACACAAAAAAAAATAATAATTGAAAAACACCCAAATTTCAAAAATTGAAAATCGCTATCGTATTTTTTGCTTGGTAAATAGTTTATTTACGGTTTCAAACTTTTTTAAAGATCATTCAATTTTCAAAAGTTCACTGAATCGTGTTTGCCAACGATACACCGGATGAGTTGAACATTCCAATACACCCAAACTTTCATTAAATTTGTCTCATTTCCAGTAAAAGATATTAAAAAGTGGCCAAGTAACACAATTTTTTTGATACTATGATAAACATTTTGTCAGTAGACCGCTTTTTATTATCTTTTACAGAAAATGAGATAAATTGACTCAAAGTTGACAGTGTGTCTATTACAGGGTTCACAATATTGCAAAAACTGAATTCAACTTTAGACATAAAAAACCTCAAAAATTA</canonical>
            <polymorphic>TAATTTCCTGTCGAAGATACCAAAAAGTGGTCAACTGACTAAATATTGGTTATAATAACACAAATATTTTGTTAGTTGATCATGTTTTTGTATCTTCTATAGGAAATGAGATATGTGGGCTCAAAGTTGGCCGCTTGGTGGGCGTCCTATAGAGTGTTTACGGTATATGAAGCTTGAAATTGTAGTTCTAAAAGTTTTCTGTTTTAGTGACTCTATTTAAAAACGATACTAGTCAAAACTTGAATGAAATACATTTCGGATAATAAGAAAAAAAAATGCATTTTCCCGATCAAATTTTCGTTTTCTTACAGTTGCCATCTATAGAAATACATGTCTAAAATTGTTCTGAAAGTTTTTCTGTTTCAAAAGTTGTTCAAACTTTTCGATTTCAATAACTCAATGATTCAATCCGTTGTTCTTCCGAAACTCAAACATTTGAATAAATTTTCTGATAAAGAATCAGAAAAGATCCTATTCTTTCTAGAAAGTTTGTGAAAAAMTTTAAATTCTTCGCTGGTCCTTCAAAATTTCAGATTTTCGAAGAATGTTGAGATCTGATTTTGAGTAAAACCGATACTGACAACAAAGACACAAAAAAAAATAATAATTGAAAAACACCCAAATTTCAAAAATTGAAAATCGCTATCGTATTTTTTGCTTGGTAAATAGTTTATTTACGGTTTCAAACTTTTTTAAAGATCATTCAATTTTCAAAAGTTCACTGAATCGTGTTTGCCAACGATACACCGGATGAGTTGAACATTCCAATACACCCAAACTTTCATTAAATTTGTCTCATTTCCAGTAAAAGATATTAAAAAGTGGCCAAGTAACACAATTTTTTTGATACTATGATAAACATTTTGTCAGTAGACCGCTTTTTATTATCTTTTACAGAAAATGAGATAAATTGACTCAAAGTTGACAGTGTGTCTATTACAGGGTTCACAATATTGCAAAAACTGAATTCAACTTTAGACATAAAAAACCTCAAAAATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>292 178 166 150 96 56 35 21 6</canonical_bands>
                <polymorphic_bands>292 178 166 150 96 62 35 21</polymorphic_bands>
            </assay>
            <assay>
                <site>ATTTAAAT</site>
                <isoschizomers>
                    <enzyme>SmiI</enzyme>
                    <enzyme>SwaI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>176 115 104 82 80 75 72 57 56 49 46 30 21 16 9 6 5 1</canonical_bands>
                <polymorphic_bands>176 115 104 82 80 75 72 62 57 49 46 30 21 16 9 5 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTTTTCTGTTTCAAAAGTTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGTGTCTTTGTTGTCAGTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGTTTTTCTGTTTCAAAAGTTGTTCAAACTTTTCGATTTCAATAACTCAATGATTCAATCCGTTGTTCTTCCGAAACTCAAACATTTGAATAAATTTTCTGATAAAGAATCAGAAAAGATCCTATTCTTTCTAGAAAGTTTGTGAAAAAATTTAAATTCTTCGCTGGTCCTTCAAAATTTCAGATTTTCGAAGAATGTTGAGATCTGATTTTGAGTAAAACCGATACTGACAACAAAGACACAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAGTTTTTCTGTTTCAAAAGTTGTTCAAACTTTTCGATTTCAATAACTCAATGATTCAATCCGTTGTTCTTCCGAAACTCAAACATTTGAATAAATTTTCTGATAAAGAATCAGAAAAGATCCTATTCTTTCTAGAAAGTTTGTGAAAAAMTTTAAATTCTTCGCTGGTCCTTCAAAATTTCAGATTTTCGAAGAATGTTGAGATCTGATTTTGAGTAAAACCGATACTGACAACAAAGACACAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25618</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>112580</contig_pos>
        <strand>+</strand>
        <context>GTGAAAAAMT[C/T]TAAATTCTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAAAGAATCAGAAAAGATCCTATTCTTTCTAGAAAGTTTGTGAAAAAAT</left_flank>
        <right_flank>TAAATTCTTCGCTGGTCCTTCAAAATTTCAGATTTTCGAAGAATGTTGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCCTGTCGAAGATACCAAAAAGTGGTCAACTGACTAAATATTGGTTATAATAACACAAATATTTTGTTAGTTGATCATGTTTTTGTATCTTCTATAGGAAATGAGATATGTGGGCTCAAAGTTGGCCGCTTGGTGGGCGTCCTATAGAGTGTTTACGGTATATGAAGCTTGAAATTGTAGTTCTAAAAGTTTTCTGTTTTAGTGACTCTATTTAAAAACGATACTAGTCAAAACTTGAATGAAATACATTTCGGATAATAAGAAAAAAAAATGCATTTTCCCGATCAAATTTTCGTTTTCTTACAGTTGCCATCTATAGAAATACATGTCTAAAATTGTTCTGAAAGTTTTTCTGTTTCAAAAGTTGTTCAAACTTTTCGATTTCAATAACTCAATGATTCAATCCGTTGTTCTTCCGAAACTCAAACATTTGAATAAATTTTCTGATAAAGAATCAGAAAAGATCCTATTCTTTCTAGAAAGTTTGTGAAAAAATTTAAATTCTTCGCTGGTCCTTCAAAATTTCAGATTTTCGAAGAATGTTGAGATCTGATTTTGAGTAAAACCGATACTGACAACAAAGACACAAAAAAAAATAATAATTGAAAAACACCCAAATTTCAAAAATTGAAAATCGCTATCGTATTTTTTGCTTGGTAAATAGTTTATTTACGGTTTCAAACTTTTTTAAAGATCATTCAATTTTCAAAAGTTCACTGAATCGTGTTTGCCAACGATACACCGGATGAGTTGAACATTCCAATACACCCAAACTTTCATTAAATTTGTCTCATTTCCAGTAAAAGATATTAAAAAGTGGCCAAGTAACACAATTTTTTTGATACTATGATAAACATTTTGTCAGTAGACCGCTTTTTATTATCTTTTACAGAAAATGAGATAAATTGACTCAAAGTTGACAGTGTGTCTATTACAGGGTTCACAATATTGCAAAAACTGAATTCAACTTTAGACATAAAAAACCTCAAAAATTAAA</canonical>
            <polymorphic>ATTTCCTGTCGAAGATACCAAAAAGTGGTCAACTGACTAAATATTGGTTATAATAACACAAATATTTTGTTAGTTGATCATGTTTTTGTATCTTCTATAGGAAATGAGATATGTGGGCTCAAAGTTGGCCGCTTGGTGGGCGTCCTATAGAGTGTTTACGGTATATGAAGCTTGAAATTGTAGTTCTAAAAGTTTTCTGTTTTAGTGACTCTATTTAAAAACGATACTAGTCAAAACTTGAATGAAATACATTTCGGATAATAAGAAAAAAAAATGCATTTTCCCGATCAAATTTTCGTTTTCTTACAGTTGCCATCTATAGAAATACATGTCTAAAATTGTTCTGAAAGTTTTTCTGTTTCAAAAGTTGTTCAAACTTTTCGATTTCAATAACTCAATGATTCAATCCGTTGTTCTTCCGAAACTCAAACATTTGAATAAATTTTCTGATAAAGAATCAGAAAAGATCCTATTCTTTCTAGAAAGTTTGTGAAAAAATYTAAATTCTTCGCTGGTCCTTCAAAATTTCAGATTTTCGAAGAATGTTGAGATCTGATTTTGAGTAAAACCGATACTGACAACAAAGACACAAAAAAAAATAATAATTGAAAAACACCCAAATTTCAAAAATTGAAAATCGCTATCGTATTTTTTGCTTGGTAAATAGTTTATTTACGGTTTCAAACTTTTTTAAAGATCATTCAATTTTCAAAAGTTCACTGAATCGTGTTTGCCAACGATACACCGGATGAGTTGAACATTCCAATACACCCAAACTTTCATTAAATTTGTCTCATTTCCAGTAAAAGATATTAAAAAGTGGCCAAGTAACACAATTTTTTTGATACTATGATAAACATTTTGTCAGTAGACCGCTTTTTATTATCTTTTACAGAAAATGAGATAAATTGACTCAAAGTTGACAGTGTGTCTATTACAGGGTTCACAATATTGCAAAAACTGAATTCAACTTTAGACATAAAAAACCTCAAAAATTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>290 178 166 150 96 56 37 21 6</canonical_bands>
                <polymorphic_bands>290 178 166 150 96 62 37 21</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>308 285 216 191</canonical_bands>
                <polymorphic_bands>476 308 216</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>285 215 191 183 92 30 4</canonical_bands>
                <polymorphic_bands>476 215 183 92 30 4</polymorphic_bands>
            </assay>
            <assay>
                <site>ATTTAAAT</site>
                <isoschizomers>
                    <enzyme>SmiI</enzyme>
                    <enzyme>SwaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>175 115 104 82 80 75 72 57 56 49 46 30 21 16 9 7 6</canonical_bands>
                <polymorphic_bands>175 115 104 82 80 75 72 62 57 49 46 30 21 16 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTTTTCTGTTTCAAAAGTTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGTGTCTTTGTTGTCAGTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGTTTTTCTGTTTCAAAAGTTGTTCAAACTTTTCGATTTCAATAACTCAATGATTCAATCCGTTGTTCTTCCGAAACTCAAACATTTGAATAAATTTTCTGATAAAGAATCAGAAAAGATCCTATTCTTTCTAGAAAGTTTGTGAAAAAATTTAAATTCTTCGCTGGTCCTTCAAAATTTCAGATTTTCGAAGAATGTTGAGATCTGATTTTGAGTAAAACCGATACTGACAACAAAGACACAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAGTTTTTCTGTTTCAAAAGTTGTTCAAACTTTTCGATTTCAATAACTCAATGATTCAATCCGTTGTTCTTCCGAAACTCAAACATTTGAATAAATTTTCTGATAAAGAATCAGAAAAGATCCTATTCTTTCTAGAAAGTTTGTGAAAAAATYTAAATTCTTCGCTGGTCCTTCAAAATTTCAGATTTTCGAAGAATGTTGAGATCTGATTTTGAGTAAAACCGATACTGACAACAAAGACACAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25619</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>112624</contig_pos>
        <strand>+</strand>
        <context>TTTCGAAGAA[G/T]GTTGAGATCT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAATTTAAATTCTTCGCTGGTCCTTCAAAATTTCAGATTTTCGAAGAA</left_flank>
        <right_flank>GTTGAGATCTGATTTTGAGTAAAACCGATACTGACAACAAAGACACAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTTATAATAACACAAATATTTTGTTAGTTGATCATGTTTTTGTATCTTCTATAGGAAATGAGATATGTGGGCTCAAAGTTGGCCGCTTGGTGGGCGTCCTATAGAGTGTTTACGGTATATGAAGCTTGAAATTGTAGTTCTAAAAGTTTTCTGTTTTAGTGACTCTATTTAAAAACGATACTAGTCAAAACTTGAATGAAATACATTTCGGATAATAAGAAAAAAAAATGCATTTTCCCGATCAAATTTTCGTTTTCTTACAGTTGCCATCTATAGAAATACATGTCTAAAATTGTTCTGAAAGTTTTTCTGTTTCAAAAGTTGTTCAAACTTTTCGATTTCAATAACTCAATGATTCAATCCGTTGTTCTTCCGAAACTCAAACATTTGAATAAATTTTCTGATAAAGAATCAGAAAAGATCCTATTCTTTCTAGAAAGTTTGTGAAAAAATTTAAATTCTTCGCTGGTCCTTCAAAATTTCAGATTTTCGAAGAATGTTGAGATCTGATTTTGAGTAAAACCGATACTGACAACAAAGACACAAAAAAAAATAATAATTGAAAAACACCCAAATTTCAAAAATTGAAAATCGCTATCGTATTTTTTGCTTGGTAAATAGTTTATTTACGGTTTCAAACTTTTTTAAAGATCATTCAATTTTCAAAAGTTCACTGAATCGTGTTTGCCAACGATACACCGGATGAGTTGAACATTCCAATACACCCAAACTTTCATTAAATTTGTCTCATTTCCAGTAAAAGATATTAAAAAGTGGCCAAGTAACACAATTTTTTTGATACTATGATAAACATTTTGTCAGTAGACCGCTTTTTATTATCTTTTACAGAAAATGAGATAAATTGACTCAAAGTTGACAGTGTGTCTATTACAGGGTTCACAATATTGCAAAAACTGAATTCAACTTTAGACATAAAAAACCTCAAAAATTAAAAATCGCTCTGGAATCTTTAGTATTTTTCTGAAGGATTTGTTTTT</canonical>
            <polymorphic>TGGTTATAATAACACAAATATTTTGTTAGTTGATCATGTTTTTGTATCTTCTATAGGAAATGAGATATGTGGGCTCAAAGTTGGCCGCTTGGTGGGCGTCCTATAGAGTGTTTACGGTATATGAAGCTTGAAATTGTAGTTCTAAAAGTTTTCTGTTTTAGTGACTCTATTTAAAAACGATACTAGTCAAAACTTGAATGAAATACATTTCGGATAATAAGAAAAAAAAATGCATTTTCCCGATCAAATTTTCGTTTTCTTACAGTTGCCATCTATAGAAATACATGTCTAAAATTGTTCTGAAAGTTTTTCTGTTTCAAAAGTTGTTCAAACTTTTCGATTTCAATAACTCAATGATTCAATCCGTTGTTCTTCCGAAACTCAAACATTTGAATAAATTTTCTGATAAAGAATCAGAAAAGATCCTATTCTTTCTAGAAAGTTTGTGAAAAAATTTAAATTCTTCGCTGGTCCTTCAAAATTTCAGATTTTCGAAGAAKGTTGAGATCTGATTTTGAGTAAAACCGATACTGACAACAAAGACACAAAAAAAAATAATAATTGAAAAACACCCAAATTTCAAAAATTGAAAATCGCTATCGTATTTTTTGCTTGGTAAATAGTTTATTTACGGTTTCAAACTTTTTTAAAGATCATTCAATTTTCAAAAGTTCACTGAATCGTGTTTGCCAACGATACACCGGATGAGTTGAACATTCCAATACACCCAAACTTTCATTAAATTTGTCTCATTTCCAGTAAAAGATATTAAAAAGTGGCCAAGTAACACAATTTTTTTGATACTATGATAAACATTTTGTCAGTAGACCGCTTTTTATTATCTTTTACAGAAAATGAGATAAATTGACTCAAAGTTGACAGTGTGTCTATTACAGGGTTCACAATATTGCAAAAACTGAATTCAACTTTAGACATAAAAAACCTCAAAAATTAAAAATCGCTCTGGAATCTTTAGTATTTTTCTGAAGGATTTGTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAACTTTTCGATTTCAATAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTGGGTGTTTTTCAATTATTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCAAACTTTTCGATTTCAATAACTCAATGATTCAATCCGTTGTTCTTCCGAAACTCAAACATTTGAATAAATTTTCTGATAAAGAATCAGAAAAGATCCTATTCTTTCTAGAAAGTTTGTGAAAAAATTTAAATTCTTCGCTGGTCCTTCAAAATTTCAGATTTTCGAAGAATGTTGAGATCTGATTTTGAGTAAAACCGATACTGACAACAAAGACACAAAAAAAAATAATAATTGAAAAACACCCAAAT</canonical_amplicon>
		<polymorphic_amplicon>TCAAACTTTTCGATTTCAATAACTCAATGATTCAATCCGTTGTTCTTCCGAAACTCAAACATTTGAATAAATTTTCTGATAAAGAATCAGAAAAGATCCTATTCTTTCTAGAAAGTTTGTGAAAAAATTTAAATTCTTCGCTGGTCCTTCAAAATTTCAGATTTTCGAAGAAKGTTGAGATCTGATTTTGAGTAAAACCGATACTGACAACAAAGACACAAAAAAAAATAATAATTGAAAAACACCCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25620</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>129258</contig_pos>
        <strand></strand>
        <context>ttcaatatct[G/T]ttacaggaat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTATCTTGATGCCAATATTATTTTGTCAGTAAACCATTTTTCAATATCT</left_flank>
        <right_flank>TTACAGGAATCGAGATAAATTGTCTTAAAGCTAAAAGTTAAGGAGCGTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAGTGGTCTTTGTTTGAAATTGTATTGTTTATTTTTTTCTGAATTTTGTTCAGAAAGTTTTTTATTTTTCGTTAAGACTACAATATATGCACAGCGCGTCAGAAGGGAAGGAAACGTCTAGAAAAATAGTCGAAGTCTGAAGAAAAAGTTTGAGAACTTTTAGACTTTTTTCAGTTTCAAAAAGTTCACTAATTCAAGATTTTTTTGAAATTCTTCGATTGTTGATTTGTGTAGCCAATTTACACATAATACAAACAAAGAATAGAAAACCAAAATTTCCAGAGACTTCGAAAAATTCAGACAGTCTCATAATCTATTTTTTTTTAGAAATTCCCCACCCGCAACCGAATTACCGTAATAGAATGCCCTCTCCCAAATCGCCAACTTTGAACCCATAGATCTCGTTTTCTGCGAAAGATATCAAAAAGTGGTCAATGGACAATATGTTTATCTTGATGCCAATATTATTTTGTCAGTAAACCATTTTTCAATATCTGTTACAGGAATCGAGATAAATTGTCTTAAAGCTAAAAGTTAAGGAGCGTTTTATTAGACCGTTTCGCAATTTTTTTTCTTTCCCTTCCACTTTTAAATGTGAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCATTCAGACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGGTATAAATTGAATAATTCATGTAGAACCCGGAAAATAAGTCCAATGAAACGGCAAAAACATTTATTTCTCAAAAGTTGAATTTTCAAAGTTCTTCCCTCTTTCAAATTGAAATAATTAATCAAAAGAAAAATGTCTTCAAAATATATGTAGGCGAAAATTATAAATCATCTAAAATCGTATAATTTTTTTAGAGAGACAAACATGTTTTATTTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTTTTAAAAGTTATCTATTTTCCTAATATTATTGCAAAAAAATTTA</canonical>
            <polymorphic>TTTGAGTGGTCTTTGTTTGAAATTGTATTGTTTATTTTTTTCTGAATTTTGTTCAGAAAGTTTTTTATTTTTCGTTAAGACTACAATATATGCACAGCGCGTCAGAAGGGAAGGAAACGTCTAGAAAAATAGTCGAAGTCTGAAGAAAAAGTTTGAGAACTTTTAGACTTTTTTCAGTTTCAAAAAGTTCACTAATTCAAGATTTTTTTGAAATTCTTCGATTGTTGATTTGTGTAGCCAATTTACACATAATACAAACAAAGAATAGAAAACCAAAATTTCCAGAGACTTCGAAAAATTCAGACAGTCTCATAATCTATTTTTTTTTAGAAATTCCCCACCCGCAACCGAATTACCGTAATAGAATGCCCTCTCCCAAATCGCCAACTTTGAACCCATAGATCTCGTTTTCTGCGAAAGATATCAAAAAGTGGTCAATGGACAATATGTTTATCTTGATGCCAATATTATTTTGTCAGTAAACCATTTTTCAATATCTKTTACAGGAATCGAGATAAATTGTCTTAAAGCTAAAAGTTAAGGAGCGTTTTATTAGACCGTTTCGCAATTTTTTTTCTTTCCCTTCCACTTTTAAATGTGAGGAACATGTAAATAAATTTCTCGAAAATTTCCGGAATCTAATTTTTCATTCAGACTCTAATGTTCATTTGATTTGACAACATTTAAAATGGTGTATTTGGTATAAATTGAATAATTCATGTAGAACCCGGAAAATAAGTCCAATGAAACGGCAAAAACATTTATTTCTCAAAAGTTGAATTTTCAAAGTTCTTCCCTCTTTCAAATTGAAATAATTAATCAAAAGAAAAATGTCTTCAAAATATATGTAGGCGAAAATTATAAATCATCTAAAATCGTATAATTTTTTTAGAGAGACAAACATGTTTTATTTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTTTTAAAAGTTATCTATTTTCCTAATATTATTGCAAAAAAATTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAGACAGTCTCATAATCTATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TAAAAGTGGAAGGGAAAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>296</pcr_amplicon_size>
		<canonical_amplicon>TTCAGACAGTCTCATAATCTATTTTTTTTTAGAAATTCCCCACCCGCAACCGAATTACCGTAATAGAATGCCCTCTCCCAAATCGCCAACTTTGAACCCATAGATCTCGTTTTCTGCGAAAGATATCAAAAAGTGGTCAATGGACAATATGTTTATCTTGATGCCAATATTATTTTGTCAGTAAACCATTTTTCAATATCTGTTACAGGAATCGAGATAAATTGTCTTAAAGCTAAAAGTTAAGGAGCGTTTTATTAGACCGTTTCGCAATTTTTTTTCTTTCCCTTCCACTTTTA</canonical_amplicon>
		<polymorphic_amplicon>TTCAGACAGTCTCATAATCTATTTTTTTTTAGAAATTCCCCACCCGCAACCGAATTACCGTAATAGAATGCCCTCTCCCAAATCGCCAACTTTGAACCCATAGATCTCGTTTTCTGCGAAAGATATCAAAAAGTGGTCAATGGACAATATGTTTATCTTGATGCCAATATTATTTTGTCAGTAAACCATTTTTCAATATCTKTTACAGGAATCGAGATAAATTGTCTTAAAGCTAAAAGTTAAGGAGCGTTTTATTAGACCGTTTCGCAATTTTTTTTCTTTCCCTTCCACTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25621</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>132927</contig_pos>
        <strand>+</strand>
        <context>gtgtgtgcat[G/T]ggctccgccc</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTACCGACACTTCCCGGGTTCCGCCGCTTGCTATGTTTTGTGTGTGCAT</left_flank>
        <right_flank>GGCTCCGCCCACTGGAAATTTGCATATTAATGAGACTCTGACAAAGATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGATGTATCTCCTCTCGTGTTTCTCTGCTGCACGACTTTGAAGGCTTTTGACGTCAATTCCAGAAGAAACAAGGATGTAGAAGGTGAGAGAAATGTTCGTGGGAAAAACTATGGGTGGCCTTATATTGGTATTTTATAGAAAAAGGGATTAGGTGGCGACAAAAAAGGAAGAATAAGTAATCCACTCAAGCATGATAATCATGTTCATTGAAGCTGCACTTTTGCTCTTCTTTCGTTTTAAAGATCTTGATCTTGATCTTTAGAAACTTCTGTAAGTTCAGACATATCAATTTACTTTTTCCGCTTCAACGGAAACCCCGAAGAAGCTTTTCCAAAATTTATGTTATCGACACATTCTCGATAGAGAAAGTTCGAAACGACAGCTAACCTTGGTTATCTGGGATAAATCCAACGAACACCGCGTTCACTCGCCTCTTATGTTTCGCCATGTACCGACACTTCCCGGGTTCCGCCGCTTGCTATGTTTTGTGTGTGCATTGGCTCCGCCCACTGGAAATTTGCATATTAATGAGACTCTGACAAAGATTAATGAGGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAGAAGGCGTTCGGACTTGCTTTTTTTCTATTTTCTCTTAAAATTTTCCATTTCTGTTTGAAAGCATTTGAAAGAGCCTTTGAAAAAGCTCAATTTTATGAATAATTCTAACCGTCCGATGTTTAATTTCTCTATTATATTTTTTCCTTCCGTTGCCTTCTCCCTAGTGTTCAATCCAGTGTAAACCCCTCCAGAATCCATCCCCTCCGAAAAGCGAGAGAAGTACTCTCTGTGAAGAGACGCAGTCGGTTAGACGACGCTGTTTGCGTATTTCCCGTGCCCGTCGAGGCGCCCTTTTCCAGCTTTTTTCCCCTTCGATTCTCGCTGAAAATCCCGAAAATGAAGCGCCTGTTCGACTTCTCGATAATCAAGTAATTATATAGTTATGTATATTGATTTATTTACATGTG</canonical>
            <polymorphic>CAGATGTATCTCCTCTCGTGTTTCTCTGCTGCACGACTTTGAAGGCTTTTGACGTCAATTCCAGAAGAAACAAGGATGTAGAAGGTGAGAGAAATGTTCGTGGGAAAAACTATGGGTGGCCTTATATTGGTATTTTATAGAAAAAGGGATTAGGTGGCGACAAAAAAGGAAGAATAAGTAATCCACTCAAGCATGATAATCATGTTCATTGAAGCTGCACTTTTGCTCTTCTTTCGTTTTAAAGATCTTGATCTTGATCTTTAGAAACTTCTGTAAGTTCAGACATATCAATTTACTTTTTCCGCTTCAACGGAAACCCCGAAGAAGCTTTTCCAAAATTTATGTTATCGACACATTCTCGATAGAGAAAGTTCGAAACGACAGCTAACCTTGGTTATCTGGGATAAATCCAACGAACACCGCGTTCACTCGCCTCTTATGTTTCGCCATGTACCGACACTTCCCGGGTTCCGCCGCTTGCTATGTTTTGTGTGTGCATKGGCTCCGCCCACTGGAAATTTGCATATTAATGAGACTCTGACAAAGATTAATGAGGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAGAAGGCGTTCGGACTTGCTTTTTTTCTATTTTCTCTTAAAATTTTCCATTTCTGTTTGAAAGCATTTGAAAGAGCCTTTGAAAAAGCTCAATTTTATGAATAATTCTAACCGTCCGATGTTTAATTTCTCTATTATATTTTTTCCTTCCGTTGCCTTCTCCCTAGTGTTCAATCCAGTGTAAACCCCTCCAGAATCCATCCCCTCCGAAAAGCGAGAGAAGTACTCTCTGTGAAGAGACGCAGTCGGTTAGACGACGCTGTTTGCGTATTTCCCGTGCCCGTCGAGGCGCCCTTTTCCAGCTTTTTTCCCCTTCGATTCTCGCTGAAAATCCCGAAAATGAAGCGCCTGTTCGACTTCTCGATAATCAAGTAATTATATAGTTATGTATATTGATTTATTTACATGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAAAATTTATGTTATCGACAC</pcr_primer_p1>
		<pcr_primer_p2>AACTTCATTGTGAAACGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCAAAATTTATGTTATCGACACATTCTCGATAGAGAAAGTTCGAAACGACAGCTAACCTTGGTTATCTGGGATAAATCCAACGAACACCGCGTTCACTCGCCTCTTATGTTTCGCCATGTACCGACACTTCCCGGGTTCCGCCGCTTGCTATGTTTTGTGTGTGCATTGGCTCCGCCCACTGGAAATTTGCATATTAATGAGACTCTGACAAAGATTAATGAGGAGAAAATCGTTTCACAATGAAGTT</canonical_amplicon>
		<polymorphic_amplicon>TCCAAAATTTATGTTATCGACACATTCTCGATAGAGAAAGTTCGAAACGACAGCTAACCTTGGTTATCTGGGATAAATCCAACGAACACCGCGTTCACTCGCCTCTTATGTTTCGCCATGTACCGACACTTCCCGGGTTCCGCCGCTTGCTATGTTTTGTGTGTGCATKGGCTCCGCCCACTGGAAATTTGCATATTAATGAGACTCTGACAAAGATTAATGAGGAGAAAATCGTTTCACAATGAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25622</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>132938</contig_pos>
        <strand>+</strand>
        <context>ggctccgccc[A/G]ctGGAAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCCGGGTTCCGCCGCTTGCTATGTTTTGTGTGTGCATTGGCTCCGCCC</left_flank>
        <right_flank>CTGGAAATTTGCATATTAATGAGACTCTGACAAAGATTAATGAGGAGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTCTCGTGTTTCTCTGCTGCACGACTTTGAAGGCTTTTGACGTCAATTCCAGAAGAAACAAGGATGTAGAAGGTGAGAGAAATGTTCGTGGGAAAAACTATGGGTGGCCTTATATTGGTATTTTATAGAAAAAGGGATTAGGTGGCGACAAAAAAGGAAGAATAAGTAATCCACTCAAGCATGATAATCATGTTCATTGAAGCTGCACTTTTGCTCTTCTTTCGTTTTAAAGATCTTGATCTTGATCTTTAGAAACTTCTGTAAGTTCAGACATATCAATTTACTTTTTCCGCTTCAACGGAAACCCCGAAGAAGCTTTTCCAAAATTTATGTTATCGACACATTCTCGATAGAGAAAGTTCGAAACGACAGCTAACCTTGGTTATCTGGGATAAATCCAACGAACACCGCGTTCACTCGCCTCTTATGTTTCGCCATGTACCGACACTTCCCGGGTTCCGCCGCTTGCTATGTTTTGTGTGTGCATTGGCTCCGCCCACTGGAAATTTGCATATTAATGAGACTCTGACAAAGATTAATGAGGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAGAAGGCGTTCGGACTTGCTTTTTTTCTATTTTCTCTTAAAATTTTCCATTTCTGTTTGAAAGCATTTGAAAGAGCCTTTGAAAAAGCTCAATTTTATGAATAATTCTAACCGTCCGATGTTTAATTTCTCTATTATATTTTTTCCTTCCGTTGCCTTCTCCCTAGTGTTCAATCCAGTGTAAACCCCTCCAGAATCCATCCCCTCCGAAAAGCGAGAGAAGTACTCTCTGTGAAGAGACGCAGTCGGTTAGACGACGCTGTTTGCGTATTTCCCGTGCCCGTCGAGGCGCCCTTTTCCAGCTTTTTTCCCCTTCGATTCTCGCTGAAAATCCCGAAAATGAAGCGCCTGTTCGACTTCTCGATAATCAAGTAATTATATAGTTATGTATATTGATTTATTTACATGTGTTTGTCACCCA</canonical>
            <polymorphic>CCTCTCGTGTTTCTCTGCTGCACGACTTTGAAGGCTTTTGACGTCAATTCCAGAAGAAACAAGGATGTAGAAGGTGAGAGAAATGTTCGTGGGAAAAACTATGGGTGGCCTTATATTGGTATTTTATAGAAAAAGGGATTAGGTGGCGACAAAAAAGGAAGAATAAGTAATCCACTCAAGCATGATAATCATGTTCATTGAAGCTGCACTTTTGCTCTTCTTTCGTTTTAAAGATCTTGATCTTGATCTTTAGAAACTTCTGTAAGTTCAGACATATCAATTTACTTTTTCCGCTTCAACGGAAACCCCGAAGAAGCTTTTCCAAAATTTATGTTATCGACACATTCTCGATAGAGAAAGTTCGAAACGACAGCTAACCTTGGTTATCTGGGATAAATCCAACGAACACCGCGTTCACTCGCCTCTTATGTTTCGCCATGTACCGACACTTCCCGGGTTCCGCCGCTTGCTATGTTTTGTGTGTGCATTGGCTCCGCCCRCTGGAAATTTGCATATTAATGAGACTCTGACAAAGATTAATGAGGAGAAAATCGTTTCACAATGAAGTTCAGGAGGCCTTAGAAGGCGTTCGGACTTGCTTTTTTTCTATTTTCTCTTAAAATTTTCCATTTCTGTTTGAAAGCATTTGAAAGAGCCTTTGAAAAAGCTCAATTTTATGAATAATTCTAACCGTCCGATGTTTAATTTCTCTATTATATTTTTTCCTTCCGTTGCCTTCTCCCTAGTGTTCAATCCAGTGTAAACCCCTCCAGAATCCATCCCCTCCGAAAAGCGAGAGAAGTACTCTCTGTGAAGAGACGCAGTCGGTTAGACGACGCTGTTTGCGTATTTCCCGTGCCCGTCGAGGCGCCCTTTTCCAGCTTTTTTCCCCTTCGATTCTCGCTGAAAATCCCGAAAATGAAGCGCCTGTTCGACTTCTCGATAATCAAGTAATTATATAGTTATGTATATTGATTTATTTACATGTGTTTGTCACCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>189 134 131 66 59 54 53 45 38 34 33 31 29 16 15 15 13 12 9 9 7 4 2 2</canonical_bands>
                <polymorphic_bands>189 134 131 74 66 54 53 45 38 34 33 31 29 16 15 13 12 9 9 7 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCAAAATTTATGTTATCGACAC</pcr_primer_p1>
		<pcr_primer_p2>AACTTCATTGTGAAACGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCAAAATTTATGTTATCGACACATTCTCGATAGAGAAAGTTCGAAACGACAGCTAACCTTGGTTATCTGGGATAAATCCAACGAACACCGCGTTCACTCGCCTCTTATGTTTCGCCATGTACCGACACTTCCCGGGTTCCGCCGCTTGCTATGTTTTGTGTGTGCATTGGCTCCGCCCACTGGAAATTTGCATATTAATGAGACTCTGACAAAGATTAATGAGGAGAAAATCGTTTCACAATGAAGTT</canonical_amplicon>
		<polymorphic_amplicon>TCCAAAATTTATGTTATCGACACATTCTCGATAGAGAAAGTTCGAAACGACAGCTAACCTTGGTTATCTGGGATAAATCCAACGAACACCGCGTTCACTCGCCTCTTATGTTTCGCCATGTACCGACACTTCCCGGGTTCCGCCGCTTGCTATGTTTTGTGTGTGCATTGGCTCCGCCCRCTGGAAATTTGCATATTAATGAGACTCTGACAAAGATTAATGAGGAGAAAATCGTTTCACAATGAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25623</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>191700</contig_pos>
        <strand></strand>
        <context>CAAAGAAATA[C/A]TGAAATAGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CAAGTTAGACGTATTAAGCTAATTCTGTTCATTCATATGACAAAGAAATA</left_flank>
        <right_flank>TGAAATAGTTAAAAATTTTGTGCAAACATTTTTCGAATCACGTTAAAAAT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTACAAGGTAAGCTCTTAACAGTAAATGTTCTGTTATATCAATTTCTTTCAGATACATGATACACCTAAAAATGGGGATTCGGACGATTCGGATCAAGATTCATGGTTTCTAGTGTCCAATAAAACAGAAATTTTTGATAATTGGAGAGAGTGTGTGAAATTGAAATTGATGGGTTTGGAGGATCCCGTTGAGGTATGAAATAGTTTGAAGAATTCTCGAGAAAAAAGCATCTTCAGTTTTGGAAGCAATTTGTGGATTCGACGAGAAAATGTGACGAGGAGGCGCAAATTTCAAAATTAGGAGTGACAGAGTTGGAAGAGCAAAAAATTGTGATTTTTCCCAAAAATGTGAGTTTCAAAGTGATAAGTGATTTCTCGGCATTTATCAGAAGCATGATTTCTGTCAGTTATCAAGTTTTTTTGGGGGTGGGATTTATTTTGGACCGTCCAAGTTAGACGTATTAAGCTAATTCTGTTCATTCATATGACAAAGAAATACTGAAATAGTTAAAAATTTTGTGCAAACATTTTTCGAATCACGTTAAAAATCGAAGTTGTGGAAGAACAACGCCAGAGACAGTGACCGAAGGTCCAACAACGACAACTATCGTAAACTAAATATATTTTTATTTTCAGAGGTTTTTTCTCGTTTTTCGTGATTTTTAGTCCATCTTTTCACTATAAAAGTTTTTGACTTCCCATGTTTGTTCTCAGTGCAAAAACTGTGATTTTTGTTGACAATAGTTATAAATGTAGTTGAGGAAACAAAAAATTTCAAAGGAAATGTCAAAGTATTACGGTAGCTGTCGTTGTGAACTTTTAGGAACTTTTAAAAATCGATGTTTCGTTTAACAAAAATTTGGACTTTTCAAAATCACAAAAATTATTGTCAAAGTGAATTCTCGAGAAAAAAAGGAAAAAAACAGATTTTTTCTTCGATTTTTTTTTGCAAAAATTCAACTTTTTTTGAAGATTCTTTTTCGCATTTTCCGATTTTTT</canonical>
            <polymorphic>ATTACAAGGTAAGCTCTTAACAGTAAATGTTCTGTTATATCAATTTCTTTCAGATACATGATACACCTAAAAATGGGGATTCGGACGATTCGGATCAAGATTCATGGTTTCTAGTGTCCAATAAAACAGAAATTTTTGATAATTGGAGAGAGTGTGTGAAATTGAAATTGATGGGTTTGGAGGATCCCGTTGAGGTATGAAATAGTTTGAAGAATTCTCGAGAAAAAAGCATCTTCAGTTTTGGAAGCAATTTGTGGATTCGACGAGAAAATGTGACGAGGAGGCGCAAATTTCAAAATTAGGAGTGACAGAGTTGGAAGAGCAAAAAATTGTGATTTTTCCCAAAAATGTGAGTTTCAAAGTGATAAGTGATTTCTCGGCATTTATCAGAAGCATGATTTCTGTCAGTTATCAAGTTTTTTTGGGGGTGGGATTTATTTTGGACCGTCCAAGTTAGACGTATTAAGCTAATTCTGTTCATTCATATGACAAAGAAATAMTGAAATAGTTAAAAATTTTGTGCAAACATTTTTCGAATCACGTTAAAAATCGAAGTTGTGGAAGAACAACGCCAGAGACAGTGACCGAAGGTCCAACAACGACAACTATCGTAAACTAAATATATTTTTATTTTCAGAGGTTTTTTCTCGTTTTTCGTGATTTTTAGTCCATCTTTTCACTATAAAAGTTTTTGACTTCCCATGTTTGTTCTCAGTGCAAAAACTGTGATTTTTGTTGACAATAGTTATAAATGTAGTTGAGGAAACAAAAAATTTCAAAGGAAATGTCAAAGTATTACGGTAGCTGTCGTTGTGAACTTTTAGGAACTTTTAAAAATCGATGTTTCGTTTAACAAAAATTTGGACTTTTCAAAATCACAAAAATTATTGTCAAAGTGAATTCTCGAGAAAAAAAGGAAAAAAACAGATTTTTTCTTCGATTTTTTTTTGCAAAAATTCAACTTTTTTTGAAGATTCTTTTTCGCATTTTCCGATTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTCTGTCAGTTATCAAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ACAGTTTTTGCACTGAGAACA</pcr_primer_p2>
		<pcr_amplicon_size>331</pcr_amplicon_size>
		<canonical_amplicon>GATTTCTGTCAGTTATCAAGTTTTTTTGGGGGTGGGATTTATTTTGGACCGTCCAAGTTAGACGTATTAAGCTAATTCTGTTCATTCATATGACAAAGAAATACTGAAATAGTTAAAAATTTTGTGCAAACATTTTTCGAATCACGTTAAAAATCGAAGTTGTGGAAGAACAACGCCAGAGACAGTGACCGAAGGTCCAACAACGACAACTATCGTAAACTAAATATATTTTTATTTTCAGAGGTTTTTTCTCGTTTTTCGTGATTTTTAGTCCATCTTTTCACTATAAAAGTTTTTGACTTCCCATGTTTGTTCTCAGTGCAAAAACTGT</canonical_amplicon>
		<polymorphic_amplicon>GATTTCTGTCAGTTATCAAGTTTTTTTGGGGGTGGGATTTATTTTGGACCGTCCAAGTTAGACGTATTAAGCTAATTCTGTTCATTCATATGACAAAGAAATAMTGAAATAGTTAAAAATTTTGTGCAAACATTTTTCGAATCACGTTAAAAATCGAAGTTGTGGAAGAACAACGCCAGAGACAGTGACCGAAGGTCCAACAACGACAACTATCGTAAACTAAATATATTTTTATTTTCAGAGGTTTTTTCTCGTTTTTCGTGATTTTTAGTCCATCTTTTCACTATAAAAGTTTTTGACTTCCCATGTTTGTTCTCAGTGCAAAAACTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25624</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>191778</contig_pos>
        <strand></strand>
        <context>aacgccagag[A/G]cagtgaccga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTTCGAATCACGTTAAAAATCGAAGTTGTGGAAGAACAACGCCAGAG</left_flank>
        <right_flank>CAGTGACCGAAGGTCCAACAACGACAACTATCGTAAACTAAATATATTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCGGACGATTCGGATCAAGATTCATGGTTTCTAGTGTCCAATAAAACAGAAATTTTTGATAATTGGAGAGAGTGTGTGAAATTGAAATTGATGGGTTTGGAGGATCCCGTTGAGGTATGAAATAGTTTGAAGAATTCTCGAGAAAAAAGCATCTTCAGTTTTGGAAGCAATTTGTGGATTCGACGAGAAAATGTGACGAGGAGGCGCAAATTTCAAAATTAGGAGTGACAGAGTTGGAAGAGCAAAAAATTGTGATTTTTCCCAAAAATGTGAGTTTCAAAGTGATAAGTGATTTCTCGGCATTTATCAGAAGCATGATTTCTGTCAGTTATCAAGTTTTTTTGGGGGTGGGATTTATTTTGGACCGTCCAAGTTAGACGTATTAAGCTAATTCTGTTCATTCATATGACAAAGAAATACTGAAATAGTTAAAAATTTTGTGCAAACATTTTTCGAATCACGTTAAAAATCGAAGTTGTGGAAGAACAACGCCAGAGACAGTGACCGAAGGTCCAACAACGACAACTATCGTAAACTAAATATATTTTTATTTTCAGAGGTTTTTTCTCGTTTTTCGTGATTTTTAGTCCATCTTTTCACTATAAAAGTTTTTGACTTCCCATGTTTGTTCTCAGTGCAAAAACTGTGATTTTTGTTGACAATAGTTATAAATGTAGTTGAGGAAACAAAAAATTTCAAAGGAAATGTCAAAGTATTACGGTAGCTGTCGTTGTGAACTTTTAGGAACTTTTAAAAATCGATGTTTCGTTTAACAAAAATTTGGACTTTTCAAAATCACAAAAATTATTGTCAAAGTGAATTCTCGAGAAAAAAAGGAAAAAAACAGATTTTTTCTTCGATTTTTTTTTGCAAAAATTCAACTTTTTTTGAAGATTCTTTTTCGCATTTTCCGATTTTTTTGTCTGAAATCTGACGGGATGATGTTCTTGACTGAAGATTACAGTAGAAAACCTGATTTTTTAAAGTTATTTTGCAAA</canonical>
            <polymorphic>ATTCGGACGATTCGGATCAAGATTCATGGTTTCTAGTGTCCAATAAAACAGAAATTTTTGATAATTGGAGAGAGTGTGTGAAATTGAAATTGATGGGTTTGGAGGATCCCGTTGAGGTATGAAATAGTTTGAAGAATTCTCGAGAAAAAAGCATCTTCAGTTTTGGAAGCAATTTGTGGATTCGACGAGAAAATGTGACGAGGAGGCGCAAATTTCAAAATTAGGAGTGACAGAGTTGGAAGAGCAAAAAATTGTGATTTTTCCCAAAAATGTGAGTTTCAAAGTGATAAGTGATTTCTCGGCATTTATCAGAAGCATGATTTCTGTCAGTTATCAAGTTTTTTTGGGGGTGGGATTTATTTTGGACCGTCCAAGTTAGACGTATTAAGCTAATTCTGTTCATTCATATGACAAAGAAATACTGAAATAGTTAAAAATTTTGTGCAAACATTTTTCGAATCACGTTAAAAATCGAAGTTGTGGAAGAACAACGCCAGAGRCAGTGACCGAAGGTCCAACAACGACAACTATCGTAAACTAAATATATTTTTATTTTCAGAGGTTTTTTCTCGTTTTTCGTGATTTTTAGTCCATCTTTTCACTATAAAAGTTTTTGACTTCCCATGTTTGTTCTCAGTGCAAAAACTGTGATTTTTGTTGACAATAGTTATAAATGTAGTTGAGGAAACAAAAAATTTCAAAGGAAATGTCAAAGTATTACGGTAGCTGTCGTTGTGAACTTTTAGGAACTTTTAAAAATCGATGTTTCGTTTAACAAAAATTTGGACTTTTCAAAATCACAAAAATTATTGTCAAAGTGAATTCTCGAGAAAAAAAGGAAAAAAACAGATTTTTTCTTCGATTTTTTTTTGCAAAAATTCAACTTTTTTTGAAGATTCTTTTTCGCATTTTCCGATTTTTTTGTCTGAAATCTGACGGGATGATGTTCTTGACTGAAGATTACAGTAGAAAACCTGATTTTTTAAAGTTATTTTGCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>368 243 145 134 75 35</canonical_bands>
                <polymorphic_bands>368 279 243 75 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAAACATTTTTCGAATCAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGTTTCCTCAACTACATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCAAACATTTTTCGAATCACGTTAAAAATCGAAGTTGTGGAAGAACAACGCCAGAGACAGTGACCGAAGGTCCAACAACGACAACTATCGTAAACTAAATATATTTTTATTTTCAGAGGTTTTTTCTCGTTTTTCGTGATTTTTAGTCCATCTTTTCACTATAAAAGTTTTTGACTTCCCATGTTTGTTCTCAGTGCAAAAACTGTGATTTTTGTTGACAATAGTTATAAATGTAGTTGAGGAAACAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GCAAACATTTTTCGAATCACGTTAAAAATCGAAGTTGTGGAAGAACAACGCCAGAGRCAGTGACCGAAGGTCCAACAACGACAACTATCGTAAACTAAATATATTTTTATTTTCAGAGGTTTTTTCTCGTTTTTCGTGATTTTTAGTCCATCTTTTCACTATAAAAGTTTTTGACTTCCCATGTTTGTTCTCAGTGCAAAAACTGTGATTTTTGTTGACAATAGTTATAAATGTAGTTGAGGAAACAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25625</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>192028</contig_pos>
        <strand></strand>
        <context>CTTTTAGGAA[C/T]TTTTAAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGGAAATGTCAAAGTATTACGGTAGCTGTCGTTGTGAACTTTTAGGAA</left_flank>
        <right_flank>TTTTAAAAATCGATGTTTCGTTTAACAAAAATTTGGACTTTTCAAAATCA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGTGATTTTTCCCAAAAATGTGAGTTTCAAAGTGATAAGTGATTTCTCGGCATTTATCAGAAGCATGATTTCTGTCAGTTATCAAGTTTTTTTGGGGGTGGGATTTATTTTGGACCGTCCAAGTTAGACGTATTAAGCTAATTCTGTTCATTCATATGACAAAGAAATACTGAAATAGTTAAAAATTTTGTGCAAACATTTTTCGAATCACGTTAAAAATCGAAGTTGTGGAAGAACAACGCCAGAGACAGTGACCGAAGGTCCAACAACGACAACTATCGTAAACTAAATATATTTTTATTTTCAGAGGTTTTTTCTCGTTTTTCGTGATTTTTAGTCCATCTTTTCACTATAAAAGTTTTTGACTTCCCATGTTTGTTCTCAGTGCAAAAACTGTGATTTTTGTTGACAATAGTTATAAATGTAGTTGAGGAAACAAAAAATTTCAAAGGAAATGTCAAAGTATTACGGTAGCTGTCGTTGTGAACTTTTAGGAACTTTTAAAAATCGATGTTTCGTTTAACAAAAATTTGGACTTTTCAAAATCACAAAAATTATTGTCAAAGTGAATTCTCGAGAAAAAAAGGAAAAAAACAGATTTTTTCTTCGATTTTTTTTTGCAAAAATTCAACTTTTTTTGAAGATTCTTTTTCGCATTTTCCGATTTTTTTGTCTGAAATCTGACGGGATGATGTTCTTGACTGAAGATTACAGTAGAAAACCTGATTTTTTAAAGTTATTTTGCAAACAGAATCACACCAAAATGTAGACTAAAATTGTGTTTGCAAAAAAAAGGAAACTGGTTTCTACAGTCATCTACAGTAATCAAGACACCGTTCCATCAAATATGAGACTTAAAAAAACAAGAAGAATCGAAAAATAATCTTTGAAAATAGCTGAAAATCCTAAAAAGGTCTAAACATTTTCAAAAAATCGAATAAAAAATGAGTATTTCTCTTGAAAAATCGCAAAAAAATGCTAATTTTTTAGGATACGGT</canonical>
            <polymorphic>ATTGTGATTTTTCCCAAAAATGTGAGTTTCAAAGTGATAAGTGATTTCTCGGCATTTATCAGAAGCATGATTTCTGTCAGTTATCAAGTTTTTTTGGGGGTGGGATTTATTTTGGACCGTCCAAGTTAGACGTATTAAGCTAATTCTGTTCATTCATATGACAAAGAAATACTGAAATAGTTAAAAATTTTGTGCAAACATTTTTCGAATCACGTTAAAAATCGAAGTTGTGGAAGAACAACGCCAGAGACAGTGACCGAAGGTCCAACAACGACAACTATCGTAAACTAAATATATTTTTATTTTCAGAGGTTTTTTCTCGTTTTTCGTGATTTTTAGTCCATCTTTTCACTATAAAAGTTTTTGACTTCCCATGTTTGTTCTCAGTGCAAAAACTGTGATTTTTGTTGACAATAGTTATAAATGTAGTTGAGGAAACAAAAAATTTCAAAGGAAATGTCAAAGTATTACGGTAGCTGTCGTTGTGAACTTTTAGGAAYTTTTAAAAATCGATGTTTCGTTTAACAAAAATTTGGACTTTTCAAAATCACAAAAATTATTGTCAAAGTGAATTCTCGAGAAAAAAAGGAAAAAAACAGATTTTTTCTTCGATTTTTTTTTGCAAAAATTCAACTTTTTTTGAAGATTCTTTTTCGCATTTTCCGATTTTTTTGTCTGAAATCTGACGGGATGATGTTCTTGACTGAAGATTACAGTAGAAAACCTGATTTTTTAAAGTTATTTTGCAAACAGAATCACACCAAAATGTAGACTAAAATTGTGTTTGCAAAAAAAAGGAAACTGGTTTCTACAGTCATCTACAGTAATCAAGACACCGTTCCATCAAATATGAGACTTAAAAAAACAAGAAGAATCGAAAAATAATCTTTGAAAATAGCTGAAAATCCTAAAAAGGTCTAAACATTTTCAAAAAATCGAATAAAAAATGAGTATTTCTCTTGAAAAATCGCAAAAAAATGCTAATTTTTTAGGATACGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTGTTCTCAGTGCAAAAACT</pcr_primer_p1>
		<pcr_primer_p2>CGAGAATTCACTTTGACAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>203</pcr_amplicon_size>
		<canonical_amplicon>GTTTGTTCTCAGTGCAAAAACTGTGATTTTTGTTGACAATAGTTATAAATGTAGTTGAGGAAACAAAAAATTTCAAAGGAAATGTCAAAGTATTACGGTAGCTGTCGTTGTGAACTTTTAGGAACTTTTAAAAATCGATGTTTCGTTTAACAAAAATTTGGACTTTTCAAAATCACAAAAATTATTGTCAAAGTGAATTCTCG</canonical_amplicon>
		<polymorphic_amplicon>GTTTGTTCTCAGTGCAAAAACTGTGATTTTTGTTGACAATAGTTATAAATGTAGTTGAGGAAACAAAAAATTTCAAAGGAAATGTCAAAGTATTACGGTAGCTGTCGTTGTGAACTTTTAGGAAYTTTTAAAAATCGATGTTTCGTTTAACAAAAATTTGGACTTTTCAAAATCACAAAAATTATTGTCAAAGTGAATTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25626</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>211605</contig_pos>
        <strand>+</strand>
        <context>TTGGTACCCA[A/C]TCCCCCTAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CACACATACACATAAAGGGGCGAAGGAAACTCGTTTTCTCTTGGTACCCA</left_flank>
        <right_flank>TCCCCCTAGACTCCGCCCACTTTCTCTAACAACCTCTCCTTGGATTCAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTCTCTGACACCAGCAAATCCAAATAATAAATAACCGAAATTGTTCCATTTATCATAAACTTTCTGGAACAAATTCTGAAAGAAGCTTTAATGTAAAAAACTAACCTAGATTTCCCTCAAATCTTACTATCAGATCTGGCCAGGGAAAGTGCAATATTCGCATTTTGAAAAAGTAAAAGCAATATATGCAATTGGCCATGGCCGGATCGGAATTTTCAGATTTTTCAGATAGGAATAGGTAGAAAGAATAGTACTTACCTTTCTGAAACTGTCTTACTTTCTAGACGAGGCCATGGTCAAGTGCAATATTAGCATATATAGCGCAATATATGCACATGACCAGAGCCTGATCCAAGATTTCAGATTTTTAGAATAGGGAATAGTAGAGGAATAGGTATTCTTCTGAAGACGCTCCAACCAATCAACATTTGAAAAAATGGCAAAGGACACACATACACATAAAGGGGCGAAGGAAACTCGTTTTCTCTTGGTACCCACTCCCCCTAGACTCCGCCCACTTTCTCTAACAACCTCTCCTTGGATTCAACAGTCTCTAGTTTTACAGGGAAAAAAATGAGAAGGTGTCTGGTTCTTCTGGTTACATACACACCATTTGAAATCGAAAAAAGGGGAGGAAAATCGTTCTGTGTGATTTGTATGTTCTGAGGAGAATAAGAAGAACATTTGAAGGATTGAGAAGACGTTCCGAAGGATGTAGTAAGGGGAACTAGAATAATTGACAAAGGGAAAAGTTTCCAGGAGAGAACAGGTGTTCTTTTGTGTCGAGAAAACTAGAGGAAACAGTCTCGAGGGATTACTGTAGTTATTCAGCTTTTGAGAAATTCAAACTATCTGGATAGCGGCTTAGACCGTTTTGAATCAAAATATGAGTCCAATATGAGCAACAGGCTTTGACTTTCATTGTTCGAAAAATATTTTAAATTAGCTTAAAAGCTTAAAGCTTAGAATTAGCTTAAAACCTGTAATAGAAGAGCTTC</canonical>
            <polymorphic>ATCTCTCTGACACCAGCAAATCCAAATAATAAATAACCGAAATTGTTCCATTTATCATAAACTTTCTGGAACAAATTCTGAAAGAAGCTTTAATGTAAAAAACTAACCTAGATTTCCCTCAAATCTTACTATCAGATCTGGCCAGGGAAAGTGCAATATTCGCATTTTGAAAAAGTAAAAGCAATATATGCAATTGGCCATGGCCGGATCGGAATTTTCAGATTTTTCAGATAGGAATAGGTAGAAAGAATAGTACTTACCTTTCTGAAACTGTCTTACTTTCTAGACGAGGCCATGGTCAAGTGCAATATTAGCATATATAGCGCAATATATGCACATGACCAGAGCCTGATCCAAGATTTCAGATTTTTAGAATAGGGAATAGTAGAGGAATAGGTATTCTTCTGAAGACGCTCCAACCAATCAACATTTGAAAAAATGGCAAAGGACACACATACACATAAAGGGGCGAAGGAAACTCGTTTTCTCTTGGTACCCAMTCCCCCTAGACTCCGCCCACTTTCTCTAACAACCTCTCCTTGGATTCAACAGTCTCTAGTTTTACAGGGAAAAAAATGAGAAGGTGTCTGGTTCTTCTGGTTACATACACACCATTTGAAATCGAAAAAAGGGGAGGAAAATCGTTCTGTGTGATTTGTATGTTCTGAGGAGAATAAGAAGAACATTTGAAGGATTGAGAAGACGTTCCGAAGGATGTAGTAAGGGGAACTAGAATAATTGACAAAGGGAAAAGTTTCCAGGAGAGAACAGGTGTTCTTTTGTGTCGAGAAAACTAGAGGAAACAGTCTCGAGGGATTACTGTAGTTATTCAGCTTTTGAGAAATTCAAACTATCTGGATAGCGGCTTAGACCGTTTTGAATCAAAATATGAGTCCAATATGAGCAACAGGCTTTGACTTTCATTGTTCGAAAAATATTTTAAATTAGCTTAAAAGCTTAAAGCTTAGAATTAGCTTAAAACCTGTAATAGAAGAGCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>216 152 141 121 115 67 40 40 31 23 20 12 10 6 2 2 2</canonical_bands>
                <polymorphic_bands>216 152 141 121 115 67 60 40 31 23 12 10 6 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAGGACACACATACACATAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCAAATGTTCTTCTTATTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAAGGACACACATACACATAAAGGGGCGAAGGAAACTCGTTTTCTCTTGGTACCCACTCCCCCTAGACTCCGCCCACTTTCTCTAACAACCTCTCCTTGGATTCAACAGTCTCTAGTTTTACAGGGAAAAAAATGAGAAGGTGTCTGGTTCTTCTGGTTACATACACACCATTTGAAATCGAAAAAAGGGGAGGAAAATCGTTCTGTGTGATTTGTATGTTCTGAGGAGAATAAGAAGAACATTTGAA</canonical_amplicon>
		<polymorphic_amplicon>CAAAGGACACACATACACATAAAGGGGCGAAGGAAACTCGTTTTCTCTTGGTACCCAMTCCCCCTAGACTCCGCCCACTTTCTCTAACAACCTCTCCTTGGATTCAACAGTCTCTAGTTTTACAGGGAAAAAAATGAGAAGGTGTCTGGTTCTTCTGGTTACATACACACCATTTGAAATCGAAAAAAGGGGAGGAAAATCGTTCTGTGTGATTTGTATGTTCTGAGGAGAATAAGAAGAACATTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25627</snp_id>
        <super_contig>c001500654.Contig4</super_contig>
        <contig_pos>231500</contig_pos>
        <strand>+</strand>
        <context>ATTTACGTAG[C/T]AAAAAAATAT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCGTATAGTAGCGCGGAATACGCTCCTAAATTAATTGTCGATTTACGTAG</left_flank>
        <right_flank>AAAAAAATATCGGACTAACTATAGAAATGATGATCTTTATTAAATTACTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTCATATTTTTCCGGCAGTTTTCATTTTAGAAAATTCCAATTTCCGACTTGTTTGGAGGTTATTAACACAAAAGCTTTCGAAAAGCAATAGTAATCGAGACAAAATGACTGAAATTTTTAGGTTACTGTAGTTGTTGTTGTGGGACCTTCGACCACGGGAAGCGGTATTTCTCTTCAACAGTTTCGATTTTTGTTAATTGAACAATAATTGGAATATTTTTATGCTGATTTTTTTCCCTGATTCCACTCGACATAAACGATTACTAACAATATGATCTCAAAACTTTTGAAACTTTACTGAAACAGAAATACTCAGAGGAAATTTGGCCTAATAGCGCGTCATTTGGCAAGGCGCTACATGCATTTCACGCCTTGCCAAATCGACCCGCTATTAGCCGTTTTGGACCGCTATTAGCCGCATAGGGGCTCAATACGGTAGCTGTGAAGCGTATAGTAGCGCGGAATACGCTCCTAAATTAATTGTCGATTTACGTAGAAAAAAAATATCGGACTAACTATAGAAATGATGATCTTTATTAAATTACTGAAAACGTATAACAATAAAAGAGATTGGATAATGTAATATGATTGGATAGCAAAAAATTAGAGTGAAGTTGCAAGAGATGATGAAGGTGAATGAAGTGTGATGAATGAAGTGTAGAATGATTTAACGGATCCTCGTTCATGCCGTCATCGTTCGGAAATCATGCCGTCATCGTTCAGAAATAAATTAAAAGTAAATAATGCGCCAGGAAGATCGAGTGATCTTCGCTAATAGCCGGGAAGATGCCGAGAAGGCGCCACTCGACGCTAAAATCCTCTGAGTTAGTATTCGTACAATTATGCTTCAAATTATCAAAAAACCACCATTACAGCAAAACTGAATACCGTAAAACCTGAGCGAGGGTGGGCGGAGCTTGGGTCTGGTAGCGAAATTCTTAAAGGAGCATGTATTTTTTGTACTTCTTTTTTAGCCTTTTTTGCTATTTTTCAATGA</canonical>
            <polymorphic>ATTTTCATATTTTTCCGGCAGTTTTCATTTTAGAAAATTCCAATTTCCGACTTGTTTGGAGGTTATTAACACAAAAGCTTTCGAAAAGCAATAGTAATCGAGACAAAATGACTGAAATTTTTAGGTTACTGTAGTTGTTGTTGTGGGACCTTCGACCACGGGAAGCGGTATTTCTCTTCAACAGTTTCGATTTTTGTTAATTGAACAATAATTGGAATATTTTTATGCTGATTTTTTTCCCTGATTCCACTCGACATAAACGATTACTAACAATATGATCTCAAAACTTTTGAAACTTTACTGAAACAGAAATACTCAGAGGAAATTTGGCCTAATAGCGCGTCATTTGGCAAGGCGCTACATGCATTTCACGCCTTGCCAAATCGACCCGCTATTAGCCGTTTTGGACCGCTATTAGCCGCATAGGGGCTCAATACGGTAGCTGTGAAGCGTATAGTAGCGCGGAATACGCTCCTAAATTAATTGTCGATTTACGTAGYAAAAAAATATCGGACTAACTATAGAAATGATGATCTTTATTAAATTACTGAAAACGTATAACAATAAAAGAGATTGGATAATGTAATATGATTGGATAGCAAAAAATTAGAGTGAAGTTGCAAGAGATGATGAAGGTGAATGAAGTGTGATGAATGAAGTGTAGAATGATTTAACGGATCCTCGTTCATGCCGTCATCGTTCGGAAATCATGCCGTCATCGTTCAGAAATAAATTAAAAGTAAATAATGCGCCAGGAAGATCGAGTGATCTTCGCTAATAGCCGGGAAGATGCCGAGAAGGCGCCACTCGACGCTAAAATCCTCTGAGTTAGTATTCGTACAATTATGCTTCAAATTATCAAAAAACCACCATTACAGCAAAACTGAATACCGTAAAACCTGAGCGAGGGTGGGCGGAGCTTGGGTCTGGTAGCGAAATTCTTAAAGGAGCATGTATTTTTTGTACTTCTTTTTTAGCCTTTTTTGCTATTTTTCAATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTAGCTGTGAAGCGTATAGTAG</pcr_primer_p1>
		<pcr_primer_p2>GGATCCGTTAAATCATTCTACA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GGTAGCTGTGAAGCGTATAGTAGCGCGGAATACGCTCCTAAATTAATTGTCGATTTACGTAGAAAAAAAATATCGGACTAACTATAGAAATGATGATCTTTATTAAATTACTGAAAACGTATAACAATAAAAGAGATTGGATAATGTAATATGATTGGATAGCAAAAAATTAGAGTGAAGTTGCAAGAGATGATGAAGGTGAATGAAGTGTGATGAATGAAGTGTAGAATGATTTAACGGATCC</canonical_amplicon>
		<polymorphic_amplicon>GGTAGCTGTGAAGCGTATAGTAGCGCGGAATACGCTCCTAAATTAATTGTCGATTTACGTAGYAAAAAAATATCGGACTAACTATAGAAATGATGATCTTTATTAAATTACTGAAAACGTATAACAATAAAAGAGATTGGATAATGTAATATGATTGGATAGCAAAAAATTAGAGTGAAGTTGCAAGAGATGATGAAGGTGAATGAAGTGTGATGAATGAAGTGTAGAATGATTTAACGGATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25628</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>11408</contig_pos>
        <strand></strand>
        <context>GCAAAAGATC[T/C]ATTAAAAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CGGAACCTTCGGAATTTCGCAAATAGAAATTTTTAAAAGCGCAAAAGATC</left_flank>
        <right_flank>ATTAAAAACTTTGTAAAAAACTAAACATATTTCGATAACTGCATTCTTTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAACCTTAATCATTCAGTATGTTTTCCTCTACAATTATGTGCTCGTACCTTATCCTTCATTCCATTCCCCTTTCATCATCTCTTTTCATGGTAACATATAATTTCAAAAGAGGAAGAGACAAGCTGTGTCCAACAGCCGTTCTCCTTTGTATTCTATCCGTACGAATGCATATATTCTATGAATCAGAGAGTCTTCCTTCTGGCTCATCTTGTCTTGTTTTAATTCACACCTTCCAAGATTTGACTCTTCTTCTTCTTCTTTATTCTGATGTTTGGGATTGGCTTTTTCTGTTCAATTGAAATTTTATTAGATAAATCTAGATAGGAGCCTAGATAGCTGAGTTCTTCTTTTGAAGAAGAGTATCGTAGTCGTAGTCTCAGGCTGTCTTGCATTCAGATTCTTTTTTCGGAAGGTCGAAAATTCCAGTTTTTAAAAATTCCAAATTTCGGAACCTTCGGAATTTCGCAAATAGAAATTTTTAAAAGCGCAAAAGATCTATTAAAAACTTTGTAAAAAACTAAACATATTTCGATAACTGCATTCTTTTGTGGCTCCGCGTCACTTCGAAACCAGTCATTTCGAAACCGAGTCGCAACCGGGGTAACACAGGCAAAAATAGATAAATTTCAGACTACAAAAACAATTTTAGGGTTTCATGCTTTTTTTCAGATAGAAAACAATCTGAAAATCGAAAAATTCTAAATTTTTTCTTCTTTTGAGAACATCAAGTTTTGGTTTTTTTTCGATTTTCGGAATGTGTTCTATCAGAAAAAGCATATTTGAAAACGCGAAAAATTGGTATAAATATAATTTTTTGTTTGATTCAAAAAAACTGAAATTTCCAATAAGTTTTCTCAAGTCTAGGTATTGTTATGATGGTTCAACGATGAATAGCGCAATTTTGGTATTTTCATGGGATGAAGCAGCTTTGACAAGTGATAACCCAGCTCAACGTTTGTCAAATCGTTTGAAACAGTTTACTAATGAATAATTTGAA</canonical>
            <polymorphic>GAGAACCTTAATCATTCAGTATGTTTTCCTCTACAATTATGTGCTCGTACCTTATCCTTCATTCCATTCCCCTTTCATCATCTCTTTTCATGGTAACATATAATTTCAAAAGAGGAAGAGACAAGCTGTGTCCAACAGCCGTTCTCCTTTGTATTCTATCCGTACGAATGCATATATTCTATGAATCAGAGAGTCTTCCTTCTGGCTCATCTTGTCTTGTTTTAATTCACACCTTCCAAGATTTGACTCTTCTTCTTCTTCTTTATTCTGATGTTTGGGATTGGCTTTTTCTGTTCAATTGAAATTTTATTAGATAAATCTAGATAGGAGCCTAGATAGCTGAGTTCTTCTTTTGAAGAAGAGTATCGTAGTCGTAGTCTCAGGCTGTCTTGCATTCAGATTCTTTTTTCGGAAGGTCGAAAATTCCAGTTTTTAAAAATTCCAAATTTCGGAACCTTCGGAATTTCGCAAATAGAAATTTTTAAAAGCGCAAAAGATCYATTAAAAACTTTGTAAAAAACTAAACATATTTCGATAACTGCATTCTTTTGTGGCTCCGCGTCACTTCGAAACCAGTCATTTCGAAACCGAGTCGCAACCGGGGTAACACAGGCAAAAATAGATAAATTTCAGACTACAAAAACAATTTTAGGGTTTCATGCTTTTTTTCAGATAGAAAACAATCTGAAAATCGAAAAATTCTAAATTTTTTCTTCTTTTGAGAACATCAAGTTTTGGTTTTTTTTCGATTTTCGGAATGTGTTCTATCAGAAAAAGCATATTTGAAAACGCGAAAAATTGGTATAAATATAATTTTTTGTTTGATTCAAAAAAACTGAAATTTCCAATAAGTTTTCTCAAGTCTAGGTATTGTTATGATGGTTCAACGATGAATAGCGCAATTTTGGTATTTTCATGGGATGAAGCAGCTTTGACAAGTGATAACCCAGCTCAACGTTTGTCAAATCGTTTGAAACAGTTTACTAATGAATAATTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTCTTGCATTCAGATTCTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTATCTATTTTTGCCTGTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTGTCTTGCATTCAGATTCTTTTTTCGGAAGGTCGAAAATTCCAGTTTTTAAAAATTCCAAATTTCGGAACCTTCGGAATTTCGCAAATAGAAATTTTTAAAAGCGCAAAAGATCTATTAAAAACTTTGTAAAAAACTAAACATATTTCGATAACTGCATTCTTTTGTGGCTCCGCGTCACTTCGAAACCAGTCATTTCGAAACCGAGTCGCAACCGGGGTAACACAGGCAAAAATAGATAAATTT</canonical_amplicon>
		<polymorphic_amplicon>CTGTCTTGCATTCAGATTCTTTTTTCGGAAGGTCGAAAATTCCAGTTTTTAAAAATTCCAAATTTCGGAACCTTCGGAATTTCGCAAATAGAAATTTTTAAAAGCGCAAAAGATCYATTAAAAACTTTGTAAAAAACTAAACATATTTCGATAACTGCATTCTTTTGTGGCTCCGCGTCACTTCGAAACCAGTCATTTCGAAACCGAGTCGCAACCGGGGTAACACAGGCAAAAATAGATAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25629</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>59705</contig_pos>
        <strand>+</strand>
        <context>TTTTCTAGAC[C/T]ATCTTCCGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCAAAGTTGAATCTCTCTTTTTCTTATATCAATGTTTGTTTTCTAGAC</left_flank>
        <right_flank>ATCTTCCGATTTTCGGCTATATTTAGATATTCTTCTCAAATCGCCGGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGCCTTTCACTTTAAATTCGATTTTCTTTCTCATAATTCTAACCCTCCTCCCCAGCTGTTCTGTGTTTAACCCTTCACCTTCCCAAGACAAACAGCTTTTTGTCTCTCTGATTGATTCATTTCAACCCTCCCGAGTATATCTGGCTGTACTCATCTATTTGTTCTATTCCAATGAACAACCGGTTCACCTCCTCATTTTTCTCGTTTTCCTAAATACCCTTTGCACCACCACCTCACACTATTTTCTTGGAAAATGTTTTGAAGTTTGAATCCTCCCGTTCCTTTCATTTTCTTCCTCATTTTTATTCAATTGTCTCCTCATTTTCCGAGTTTCGAATGAGGAATTGAATACAATTGAATCATGATTTTGTAACCTTCAAAAGTTGAGAAATGGCCGCCAGCTGGCGAGACAAAAAGAAATAGAAGATGGCCTCCTTTCGTGTTCATCTTTCAAAGTTGAATCTCTCTTTTTCTTATATCAATGTTTGTTTTCTAGACGATCTTCCGATTTTCGGCTATATTTAGATATTCTTCTCAAATCGCCGGTTTACTTCAAATCAATCAGATTCCCTAAAAATCTGCAAGTCCGAAAAATCCTTAAAATATTTTTTTTCATTTCACCGAGTAAATTAGGTTGCTTGTATGAACCAATATCATCATGTATTTCTATTTATTCGGTCGGAATTATGATTCATTTTTTTATTAGAAAAATTAGCTTCTTTATCTTGAGATGGTTTGGATGATTGGTAAGTGTGAGGAGAGCAATAACGTTAGTGTAAATATGAGCAAAAAAGTGAGCTCAAACTTTGCTCGTCAAAAATCTATGTATATTCCTAATTTTCCAAATCAGTTCCTTTCCTTTTTTTTCAATTGATATCATATCAGTTTACTTTTCCAAAATAAGGTTCATTGTGACCACAAAGATTGATTTCTCTACTGAACTTCCATTTCTTCTCTTATTTTTCCCCCAATTGATCTCACTGATTTATGCGAGTGTTT</canonical>
            <polymorphic>ATGCCTTTCACTTTAAATTCGATTTTCTTTCTCATAATTCTAACCCTCCTCCCCAGCTGTTCTGTGTTTAACCCTTCACCTTCCCAAGACAAACAGCTTTTTGTCTCTCTGATTGATTCATTTCAACCCTCCCGAGTATATCTGGCTGTACTCATCTATTTGTTCTATTCCAATGAACAACCGGTTCACCTCCTCATTTTTCTCGTTTTCCTAAATACCCTTTGCACCACCACCTCACACTATTTTCTTGGAAAATGTTTTGAAGTTTGAATCCTCCCGTTCCTTTCATTTTCTTCCTCATTTTTATTCAATTGTCTCCTCATTTTCCGAGTTTCGAATGAGGAATTGAATACAATTGAATCATGATTTTGTAACCTTCAAAAGTTGAGAAATGGCCGCCAGCTGGCGAGACAAAAAGAAATAGAAGATGGCCTCCTTTCGTGTTCATCTTTCAAAGTTGAATCTCTCTTTTTCTTATATCAATGTTTGTTTTCTAGACYATCTTCCGATTTTCGGCTATATTTAGATATTCTTCTCAAATCGCCGGTTTACTTCAAATCAATCAGATTCCCTAAAAATCTGCAAGTCCGAAAAATCCTTAAAATATTTTTTTTCATTTCACCGAGTAAATTAGGTTGCTTGTATGAACCAATATCATCATGTATTTCTATTTATTCGGTCGGAATTATGATTCATTTTTTTATTAGAAAAATTAGCTTCTTTATCTTGAGATGGTTTGGATGATTGGTAAGTGTGAGGAGAGCAATAACGTTAGTGTAAATATGAGCAAAAAAGTGAGCTCAAACTTTGCTCGTCAAAAATCTATGTATATTCCTAATTTTCCAAATCAGTTCCTTTCCTTTTTTTTCAATTGATATCATATCAGTTTACTTTTCCAAAATAAGGTTCATTGTGACCACAAAGATTGATTTCTCTACTGAACTTCCATTTCTTCTCTTATTTTTCCCCCAATTGATCTCACTGATTTATGCGAGTGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>499 475 26</canonical_bands>
                <polymorphic_bands>974 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGTAACCTTCAAAAGTTGAG</pcr_primer_p1>
		<pcr_primer_p2>TATTTTAAGGATTTTTCGGACTT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TTTTGTAACCTTCAAAAGTTGAGAAATGGCCGCCAGCTGGCGAGACAAAAAGAAATAGAAGATGGCCTCCTTTCGTGTTCATCTTTCAAAGTTGAATCTCTCTTTTTCTTATATCAATGTTTGTTTTCTAGACGATCTTCCGATTTTCGGCTATATTTAGATATTCTTCTCAAATCGCCGGTTTACTTCAAATCAATCAGATTCCCTAAAAATCTGCAAGTCCGAAAAATCCTTAAAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTTGTAACCTTCAAAAGTTGAGAAATGGCCGCCAGCTGGCGAGACAAAAAGAAATAGAAGATGGCCTCCTTTCGTGTTCATCTTTCAAAGTTGAATCTCTCTTTTTCTTATATCAATGTTTGTTTTCTAGACYATCTTCCGATTTTCGGCTATATTTAGATATTCTTCTCAAATCGCCGGTTTACTTCAAATCAATCAGATTCCCTAAAAATCTGCAAGTCCGAAAAATCCTTAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25630</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>59756</contig_pos>
        <strand>+</strand>
        <context>TCGCCGGTTT[A/C]CTTCAAAKCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCTTCCGATTTTCGGCTATATTTAGATATTCTTCTCAAATCGCCGGTTT</left_flank>
        <right_flank>CTTCAAATCAATCAGATTCCCTAAAAATCTGCAAGTCCGAAAAATCCTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCAGCTGTTCTGTGTTTAACCCTTCACCTTCCCAAGACAAACAGCTTTTTGTCTCTCTGATTGATTCATTTCAACCCTCCCGAGTATATCTGGCTGTACTCATCTATTTGTTCTATTCCAATGAACAACCGGTTCACCTCCTCATTTTTCTCGTTTTCCTAAATACCCTTTGCACCACCACCTCACACTATTTTCTTGGAAAATGTTTTGAAGTTTGAATCCTCCCGTTCCTTTCATTTTCTTCCTCATTTTTATTCAATTGTCTCCTCATTTTCCGAGTTTCGAATGAGGAATTGAATACAATTGAATCATGATTTTGTAACCTTCAAAAGTTGAGAAATGGCCGCCAGCTGGCGAGACAAAAAGAAATAGAAGATGGCCTCCTTTCGTGTTCATCTTTCAAAGTTGAATCTCTCTTTTTCTTATATCAATGTTTGTTTTCTAGACGATCTTCCGATTTTCGGCTATATTTAGATATTCTTCTCAAATCGCCGGTTTACTTCAAATCAATCAGATTCCCTAAAAATCTGCAAGTCCGAAAAATCCTTAAAATATTTTTTTTCATTTCACCGAGTAAATTAGGTTGCTTGTATGAACCAATATCATCATGTATTTCTATTTATTCGGTCGGAATTATGATTCATTTTTTTATTAGAAAAATTAGCTTCTTTATCTTGAGATGGTTTGGATGATTGGTAAGTGTGAGGAGAGCAATAACGTTAGTGTAAATATGAGCAAAAAAGTGAGCTCAAACTTTGCTCGTCAAAAATCTATGTATATTCCTAATTTTCCAAATCAGTTCCTTTCCTTTTTTTTCAATTGATATCATATCAGTTTACTTTTCCAAAATAAGGTTCATTGTGACCACAAAGATTGATTTCTCTACTGAACTTCCATTTCTTCTCTTATTTTTCCCCCAATTGATCTCACTGATTTATGCGAGTGTTTTTTTCTGGTTCTACTACTATTTTCTGGAAACAATAATACATGTGGTAGATA</canonical>
            <polymorphic>CCCAGCTGTTCTGTGTTTAACCCTTCACCTTCCCAAGACAAACAGCTTTTTGTCTCTCTGATTGATTCATTTCAACCCTCCCGAGTATATCTGGCTGTACTCATCTATTTGTTCTATTCCAATGAACAACCGGTTCACCTCCTCATTTTTCTCGTTTTCCTAAATACCCTTTGCACCACCACCTCACACTATTTTCTTGGAAAATGTTTTGAAGTTTGAATCCTCCCGTTCCTTTCATTTTCTTCCTCATTTTTATTCAATTGTCTCCTCATTTTCCGAGTTTCGAATGAGGAATTGAATACAATTGAATCATGATTTTGTAACCTTCAAAAGTTGAGAAATGGCCGCCAGCTGGCGAGACAAAAAGAAATAGAAGATGGCCTCCTTTCGTGTTCATCTTTCAAAGTTGAATCTCTCTTTTTCTTATATCAATGTTTGTTTTCTAGACGATCTTCCGATTTTCGGCTATATTTAGATATTCTTCTCAAATCGCCGGTTTMCTTCAAATCAATCAGATTCCCTAAAAATCTGCAAGTCCGAAAAATCCTTAAAATATTTTTTTTCATTTCACCGAGTAAATTAGGTTGCTTGTATGAACCAATATCATCATGTATTTCTATTTATTCGGTCGGAATTATGATTCATTTTTTTATTAGAAAAATTAGCTTCTTTATCTTGAGATGGTTTGGATGATTGGTAAGTGTGAGGAGAGCAATAACGTTAGTGTAAATATGAGCAAAAAAGTGAGCTCAAACTTTGCTCGTCAAAAATCTATGTATATTCCTAATTTTCCAAATCAGTTCCTTTCCTTTTTTTTCAATTGATATCATATCAGTTTACTTTTCCAAAATAAGGTTCATTGTGACCACAAAGATTGATTTCTCTACTGAACTTCCATTTCTTCTCTTATTTTTCCCCCAATTGATCTCACTGATTTATGCGAGTGTTTTTTTCTGGTTCTACTACTATTTTCTGGAAACAATAATACATGTGGTAGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>363 339 163 135</canonical_bands>
                <polymorphic_bands>702 163 135</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGTAACCTTCAAAAGTTGAG</pcr_primer_p1>
		<pcr_primer_p2>TATTTTAAGGATTTTTCGGACTT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TTTTGTAACCTTCAAAAGTTGAGAAATGGCCGCCAGCTGGCGAGACAAAAAGAAATAGAAGATGGCCTCCTTTCGTGTTCATCTTTCAAAGTTGAATCTCTCTTTTTCTTATATCAATGTTTGTTTTCTAGACGATCTTCCGATTTTCGGCTATATTTAGATATTCTTCTCAAATCGCCGGTTTACTTCAAATCAATCAGATTCCCTAAAAATCTGCAAGTCCGAAAAATCCTTAAAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTTGTAACCTTCAAAAGTTGAGAAATGGCCGCCAGCTGGCGAGACAAAAAGAAATAGAAGATGGCCTCCTTTCGTGTTCATCTTTCAAAGTTGAATCTCTCTTTTTCTTATATCAATGTTTGTTTTCTAGACGATCTTCCGATTTTCGGCTATATTTAGATATTCTTCTCAAATCGCCGGTTTMCTTCAAATCAATCAGATTCCCTAAAAATCTGCAAGTCCGAAAAATCCTTAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25631</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>59764</contig_pos>
        <strand>+</strand>
        <context>TTMCTTCAAA[G/T]CAATCAGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTTCGGCTATATTTAGATATTCTTCTCAAATCGCCGGTTTACTTCAAA</left_flank>
        <right_flank>CAATCAGATTCCCTAAAAATCTGCAAGTCCGAAAAATCCTTAAAATATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGTGTTTAACCCTTCACCTTCCCAAGACAAACAGCTTTTTGTCTCTCTGATTGATTCATTTCAACCCTCCCGAGTATATCTGGCTGTACTCATCTATTTGTTCTATTCCAATGAACAACCGGTTCACCTCCTCATTTTTCTCGTTTTCCTAAATACCCTTTGCACCACCACCTCACACTATTTTCTTGGAAAATGTTTTGAAGTTTGAATCCTCCCGTTCCTTTCATTTTCTTCCTCATTTTTATTCAATTGTCTCCTCATTTTCCGAGTTTCGAATGAGGAATTGAATACAATTGAATCATGATTTTGTAACCTTCAAAAGTTGAGAAATGGCCGCCAGCTGGCGAGACAAAAAGAAATAGAAGATGGCCTCCTTTCGTGTTCATCTTTCAAAGTTGAATCTCTCTTTTTCTTATATCAATGTTTGTTTTCTAGACGATCTTCCGATTTTCGGCTATATTTAGATATTCTTCTCAAATCGCCGGTTTACTTCAAATCAATCAGATTCCCTAAAAATCTGCAAGTCCGAAAAATCCTTAAAATATTTTTTTTCATTTCACCGAGTAAATTAGGTTGCTTGTATGAACCAATATCATCATGTATTTCTATTTATTCGGTCGGAATTATGATTCATTTTTTTATTAGAAAAATTAGCTTCTTTATCTTGAGATGGTTTGGATGATTGGTAAGTGTGAGGAGAGCAATAACGTTAGTGTAAATATGAGCAAAAAAGTGAGCTCAAACTTTGCTCGTCAAAAATCTATGTATATTCCTAATTTTCCAAATCAGTTCCTTTCCTTTTTTTTCAATTGATATCATATCAGTTTACTTTTCCAAAATAAGGTTCATTGTGACCACAAAGATTGATTTCTCTACTGAACTTCCATTTCTTCTCTTATTTTTCCCCCAATTGATCTCACTGATTTATGCGAGTGTTTTTTTCTGGTTCTACTACTATTTTCTGGAAACAATAATACATGTGGTAGATAAGAAAAAA</canonical>
            <polymorphic>TTCTGTGTTTAACCCTTCACCTTCCCAAGACAAACAGCTTTTTGTCTCTCTGATTGATTCATTTCAACCCTCCCGAGTATATCTGGCTGTACTCATCTATTTGTTCTATTCCAATGAACAACCGGTTCACCTCCTCATTTTTCTCGTTTTCCTAAATACCCTTTGCACCACCACCTCACACTATTTTCTTGGAAAATGTTTTGAAGTTTGAATCCTCCCGTTCCTTTCATTTTCTTCCTCATTTTTATTCAATTGTCTCCTCATTTTCCGAGTTTCGAATGAGGAATTGAATACAATTGAATCATGATTTTGTAACCTTCAAAAGTTGAGAAATGGCCGCCAGCTGGCGAGACAAAAAGAAATAGAAGATGGCCTCCTTTCGTGTTCATCTTTCAAAGTTGAATCTCTCTTTTTCTTATATCAATGTTTGTTTTCTAGACGATCTTCCGATTTTCGGCTATATTTAGATATTCTTCTCAAATCGCCGGTTTACTTCAAAKCAATCAGATTCCCTAAAAATCTGCAAGTCCGAAAAATCCTTAAAATATTTTTTTTCATTTCACCGAGTAAATTAGGTTGCTTGTATGAACCAATATCATCATGTATTTCTATTTATTCGGTCGGAATTATGATTCATTTTTTTATTAGAAAAATTAGCTTCTTTATCTTGAGATGGTTTGGATGATTGGTAAGTGTGAGGAGAGCAATAACGTTAGTGTAAATATGAGCAAAAAAGTGAGCTCAAACTTTGCTCGTCAAAAATCTATGTATATTCCTAATTTTCCAAATCAGTTCCTTTCCTTTTTTTTCAATTGATATCATATCAGTTTACTTTTCCAAAATAAGGTTCATTGTGACCACAAAGATTGATTTCTCTACTGAACTTCCATTTCTTCTCTTATTTTTCCCCCAATTGATCTCACTGATTTATGCGAGTGTTTTTTTCTGGTTCTACTACTATTTTCTGGAAACAATAATACATGTGGTAGATAAGAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTTTCGTGTTCATCTTTC</pcr_primer_p1>
		<pcr_primer_p2>CGACCGAATAAATAGAAATACAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCTTTCGTGTTCATCTTTCAAAGTTGAATCTCTCTTTTTCTTATATCAATGTTTGTTTTCTAGACGATCTTCCGATTTTCGGCTATATTTAGATATTCTTCTCAAATCGCCGGTTTACTTCAAATCAATCAGATTCCCTAAAAATCTGCAAGTCCGAAAAATCCTTAAAATATTTTTTTTCATTTCACCGAGTAAATTAGGTTGCTTGTATGAACCAATATCATCATGTATTTCTATTTATTCGGTCG</canonical_amplicon>
		<polymorphic_amplicon>TCCTTTCGTGTTCATCTTTCAAAGTTGAATCTCTCTTTTTCTTATATCAATGTTTGTTTTCTAGACGATCTTCCGATTTTCGGCTATATTTAGATATTCTTCTCAAATCGCCGGTTTACTTCAAAKCAATCAGATTCCCTAAAAATCTGCAAGTCCGAAAAATCCTTAAAATATTTTTTTTCATTTCACCGAGTAAATTAGGTTGCTTGTATGAACCAATATCATCATGTATTTCTATTTATTCGGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25632</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>193486</contig_pos>
        <strand></strand>
        <context>tttaggagtt[G/T]gaactttttc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATTTTCGGAATCCAATTCCGATCGGAATTATCCCGAATTTTTAGGAGTT</left_flank>
        <right_flank>GAACTTTTTCGGCAAATGCTAAAATTCTCTGAAATTGGAACCTTTCGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAGGAACTACTGACAGAGGACGAAAAAACTGAAGATCGATTAATATTTGATTGACACAGTGATGAATTTTCGGAATCAAATAGAGCACATTTTAGACCAAATCACACTCAAACTTTCAACAGAAAAATGGTGTTTGACGTAATTGTAGCTTGATCGAAAATGAGGAAGGGACTTCCTTGAAGGTTCAAAGTTCGATAAATCAGGTCTAATGAACTCTATACTGTATAGGATGAAGTACGATTTATGAGCTCAAATGTGCTCCTTGTCACTGATAAAACGGCAAATAGAGAATTTCGGAAATTTGATAATTTTTGTGTACGATTTTCTCGAAGGGAAATTTAAGAATGAAAGAAATGTGAAGTACTATAAAAATGTTTGTTACAAGCTTATTATACAGGGATGTTCGGAATGGAATTCGGAATTCCGGAAATCCTAAAAATTTTCGAGCATTTTCGGAATCCAATTCCGATCGGAATTATCCCGAATTTTTAGGAGTTGGAACTTTTTCGGCAAATGCTAAAATTCTCTGAAATTGGAACCTTTCGAAACCCGAAATTCCGAAATTTGAAACTCGGAATTTTCAACTTTCCGGAATTTTCAAAAACTTCTACCGAAATTCTAGAATTTTTAAAAACTGAATATTACAAAATATCGAAAATTTCAAAATCGGAATACTCCGAAATCCCAATTTTCAAAATTTGCATATTTTAAATTTTCCAAATCGTTACGTTTTGAAATTCGAAATTTCTCAATATTGGAAAATTCCGAAAAGTCTCGAAACTCCGAGATTTTGAAACTCGGCTTTTTGACAAAATTCCGAAAAGACCATTCCGAACATCCCCGATGTGTCCAACGACGTCTCCAGAATCACCAAAAATTCTAGAACAGCTTTCCCCGTATGGCACCCTATTTCCATGTTCTTCCATCTTGTTTTCTTCCAGTAAAAAGTAGAGAGCAAAACATCATCTTCACGGAACATCAGTTTTCAATTTCCGTTC</canonical>
            <polymorphic>ATAAGGAACTACTGACAGAGGACGAAAAAACTGAAGATCGATTAATATTTGATTGACACAGTGATGAATTTTCGGAATCAAATAGAGCACATTTTAGACCAAATCACACTCAAACTTTCAACAGAAAAATGGTGTTTGACGTAATTGTAGCTTGATCGAAAATGAGGAAGGGACTTCCTTGAAGGTTCAAAGTTCGATAAATCAGGTCTAATGAACTCTATACTGTATAGGATGAAGTACGATTTATGAGCTCAAATGTGCTCCTTGTCACTGATAAAACGGCAAATAGAGAATTTCGGAAATTTGATAATTTTTGTGTACGATTTTCTCGAAGGGAAATTTAAGAATGAAAGAAATGTGAAGTACTATAAAAATGTTTGTTACAAGCTTATTATACAGGGATGTTCGGAATGGAATTCGGAATTCCGGAAATCCTAAAAATTTTCGAGCATTTTCGGAATCCAATTCCGATCGGAATTATCCCGAATTTTTAGGAGTTKGAACTTTTTCGGCAAATGCTAAAATTCTCTGAAATTGGAACCTTTCGAAACCCGAAATTCCGAAATTTGAAACTCGGAATTTTCAACTTTCCGGAATTTTCAAAAACTTCTACCGAAATTCTAGAATTTTTAAAAACTGAATATTACAAAATATCGAAAATTTCAAAATCGGAATACTCCGAAATCCCAATTTTCAAAATTTGCATATTTTAAATTTTCCAAATCGTTACGTTTTGAAATTCGAAATTTCTCAATATTGGAAAATTCCGAAAAGTCTCGAAACTCCGAGATTTTGAAACTCGGCTTTTTGACAAAATTCCGAAAAGACCATTCCGAACATCCCCGATGTGTCCAACGACGTCTCCAGAATCACCAAAAATTCTAGAACAGCTTTCCCCGTATGGCACCCTATTTCCATGTTCTTCCATCTTGTTTTCTTCCAGTAAAAAGTAGAGAGCAAAACATCATCTTCACGGAACATCAGTTTTCAATTTCCGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTGTTACAAGCTTATTATACAGG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTGGTGATTCTGGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>506</pcr_amplicon_size>
		<canonical_amplicon>TGTTTGTTACAAGCTTATTATACAGGGATGTTCGGAATGGAATTCGGAATTCCGGAAATCCTAAAAATTTTCGAGCATTTTCGGAATCCAATTCCGATCGGAATTATCCCGAATTTTTAGGAGTTGGAACTTTTTCGGCAAATGCTAAAATTCTCTGAAATTGGAACCTTTCGAAACCCGAAATTCCGAAATTTGAAACTCGGAATTTTCAACTTTCCGGAATTTTCAAAAACTTCTACCGAAATTCTAGAATTTTTAAAAACTGAATATTACAAAATATCGAAAATTTCAAAATCGGAATACTCCGAAATCCCAATTTTCAAAATTTGCATATTTTAAATTTTCCAAATCGTTACGTTTTGAAATTCGAAATTTCTCAATATTGGAAAATTCCGAAAAGTCTCGAAACTCCGAGATTTTGAAACTCGGCTTTTTGACAAAATTCCGAAAAGACCATTCCGAACATCCCCGATGTGTCCAACGACGTCTCCAGAATCACCAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TGTTTGTTACAAGCTTATTATACAGGGATGTTCGGAATGGAATTCGGAATTCCGGAAATCCTAAAAATTTTCGAGCATTTTCGGAATCCAATTCCGATCGGAATTATCCCGAATTTTTAGGAGTTKGAACTTTTTCGGCAAATGCTAAAATTCTCTGAAATTGGAACCTTTCGAAACCCGAAATTCCGAAATTTGAAACTCGGAATTTTCAACTTTCCGGAATTTTCAAAAACTTCTACCGAAATTCTAGAATTTTTAAAAACTGAATATTACAAAATATCGAAAATTTCAAAATCGGAATACTCCGAAATCCCAATTTTCAAAATTTGCATATTTTAAATTTTCCAAATCGTTACGTTTTGAAATTCGAAATTTCTCAATATTGGAAAATTCCGAAAAGTCTCGAAACTCCGAGATTTTGAAACTCGGCTTTTTGACAAAATTCCGAAAAGACCATTCCGAACATCCCCGATGTGTCCAACGACGTCTCCAGAATCACCAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25633</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>193830</contig_pos>
        <strand></strand>
        <context>cgaacatccc[C/T]GATGTGTCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAACTCGGCTTTTTGACAAAATTCCGAAAAGACCATTCCGAACATCCC</left_flank>
        <right_flank>GATGTGTCCAACGACGTCTCCAGAATCACCAAAAATTCTAGAACAGCTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATGAAAGAAATGTGAAGTACTATAAAAATGTTTGTTACAAGCTTATTATACAGGGATGTTCGGAATGGAATTCGGAATTCCGGAAATCCTAAAAATTTTCGAGCATTTTCGGAATCCAATTCCGATCGGAATTATCCCGAATTTTTAGGAGTTGGAACTTTTTCGGCAAATGCTAAAATTCTCTGAAATTGGAACCTTTCGAAACCCGAAATTCCGAAATTTGAAACTCGGAATTTTCAACTTTCCGGAATTTTCAAAAACTTCTACCGAAATTCTAGAATTTTTAAAAACTGAATATTACAAAATATCGAAAATTTCAAAATCGGAATACTCCGAAATCCCAATTTTCAAAATTTGCATATTTTAAATTTTCCAAATCGTTACGTTTTGAAATTCGAAATTTCTCAATATTGGAAAATTCCGAAAAGTCTCGAAACTCCGAGATTTTGAAACTCGGCTTTTTGACAAAATTCCGAAAAGACCATTCCGAACATCCCCGATGTGTCCAACGACGTCTCCAGAATCACCAAAAATTCTAGAACAGCTTTCCCCGTATGGCACCCTATTTCCATGTTCTTCCATCTTGTTTTCTTCCAGTAAAAAGTAGAGAGCAAAACATCATCTTCACGGAACATCAGTTTTCAATTTCCGTTCGATTCTACTCCCTCAGTCTCGAGTTTCGGTTTTCTTCCATCACAATTTTTTTTCATTTTTCAATTTAAAATTCACTTCTCATTATTTCTTTTCCATTCACATCATCATCATCATCATCTCCTTTTTTTATCCCTCTCCTTTTTCTTTTTTGAATTCTGCAATTCCTAATTACCAGATGTATAAACACAAATGAATGAGGGACACCACCCAAGTGGCTGAATCATCGAGTGAGAAATTCGCCATTTTTCTTATATTCGATCTTTTTAATGAGGTCAGGCTGGAGAGGTAATAAGCTGTGCAATTTGGTGAATGCGAAAATCATATTGGAGGAAAAATGCAAAAAA</canonical>
            <polymorphic>GAATGAAAGAAATGTGAAGTACTATAAAAATGTTTGTTACAAGCTTATTATACAGGGATGTTCGGAATGGAATTCGGAATTCCGGAAATCCTAAAAATTTTCGAGCATTTTCGGAATCCAATTCCGATCGGAATTATCCCGAATTTTTAGGAGTTGGAACTTTTTCGGCAAATGCTAAAATTCTCTGAAATTGGAACCTTTCGAAACCCGAAATTCCGAAATTTGAAACTCGGAATTTTCAACTTTCCGGAATTTTCAAAAACTTCTACCGAAATTCTAGAATTTTTAAAAACTGAATATTACAAAATATCGAAAATTTCAAAATCGGAATACTCCGAAATCCCAATTTTCAAAATTTGCATATTTTAAATTTTCCAAATCGTTACGTTTTGAAATTCGAAATTTCTCAATATTGGAAAATTCCGAAAAGTCTCGAAACTCCGAGATTTTGAAACTCGGCTTTTTGACAAAATTCCGAAAAGACCATTCCGAACATCCCYGATGTGTCCAACGACGTCTCCAGAATCACCAAAAATTCTAGAACAGCTTTCCCCGTATGGCACCCTATTTCCATGTTCTTCCATCTTGTTTTCTTCCAGTAAAAAGTAGAGAGCAAAACATCATCTTCACGGAACATCAGTTTTCAATTTCCGTTCGATTCTACTCCCTCAGTCTCGAGTTTCGGTTTTCTTCCATCACAATTTTTTTTCATTTTTCAATTTAAAATTCACTTCTCATTATTTCTTTTCCATTCACATCATCATCATCATCATCTCCTTTTTTTATCCCTCTCCTTTTTCTTTTTTGAATTCTGCAATTCCTAATTACCAGATGTATAAACACAAATGAATGAGGGACACCACCCAAGTGGCTGAATCATCGAGTGAGAAATTCGCCATTTTTCTTATATTCGATCTTTTTAATGAGGTCAGGCTGGAGAGGTAATAAGCTGTGCAATTTGGTGAATGCGAAAATCATATTGGAGGAAAAATGCAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTGTTACAAGCTTATTATACAGG</pcr_primer_p1>
		<pcr_primer_p2>GGGAAAGCTGTTCTAGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>523</pcr_amplicon_size>
		<canonical_amplicon>TGTTTGTTACAAGCTTATTATACAGGGATGTTCGGAATGGAATTCGGAATTCCGGAAATCCTAAAAATTTTCGAGCATTTTCGGAATCCAATTCCGATCGGAATTATCCCGAATTTTTAGGAGTTGGAACTTTTTCGGCAAATGCTAAAATTCTCTGAAATTGGAACCTTTCGAAACCCGAAATTCCGAAATTTGAAACTCGGAATTTTCAACTTTCCGGAATTTTCAAAAACTTCTACCGAAATTCTAGAATTTTTAAAAACTGAATATTACAAAATATCGAAAATTTCAAAATCGGAATACTCCGAAATCCCAATTTTCAAAATTTGCATATTTTAAATTTTCCAAATCGTTACGTTTTGAAATTCGAAATTTCTCAATATTGGAAAATTCCGAAAAGTCTCGAAACTCCGAGATTTTGAAACTCGGCTTTTTGACAAAATTCCGAAAAGACCATTCCGAACATCCCCGATGTGTCCAACGACGTCTCCAGAATCACCAAAAATTCTAGAACAGCTTTCCC</canonical_amplicon>
		<polymorphic_amplicon>TGTTTGTTACAAGCTTATTATACAGGGATGTTCGGAATGGAATTCGGAATTCCGGAAATCCTAAAAATTTTCGAGCATTTTCGGAATCCAATTCCGATCGGAATTATCCCGAATTTTTAGGAGTTGGAACTTTTTCGGCAAATGCTAAAATTCTCTGAAATTGGAACCTTTCGAAACCCGAAATTCCGAAATTTGAAACTCGGAATTTTCAACTTTCCGGAATTTTCAAAAACTTCTACCGAAATTCTAGAATTTTTAAAAACTGAATATTACAAAATATCGAAAATTTCAAAATCGGAATACTCCGAAATCCCAATTTTCAAAATTTGCATATTTTAAATTTTCCAAATCGTTACGTTTTGAAATTCGAAATTTCTCAATATTGGAAAATTCCGAAAAGTCTCGAAACTCCGAGATTTTGAAACTCGGCTTTTTGACAAAATTCCGAAAAGACCATTCCGAACATCCCYGATGTGTCCAACGACGTCTCCAGAATCACCAAAAATTCTAGAACAGCTTTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25634</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>194317</contig_pos>
        <strand>+</strand>
        <context>ATATTGGAGG[A/T]AAAATGCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGAGGTAATAAGCTGTGCAATTTGGTGAATGCGAAAATCATATTGGAGG</left_flank>
        <right_flank>AAAATGCAAAAAAAAAATCTTAAAGGAGGCAAGACAGCAAAAATTTCGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCGAACATCCCCGATGTGTCCAACGACGTCTCCAGAATCACCAAAAATTCTAGAACAGCTTTCCCCGTATGGCACCCTATTTCCATGTTCTTCCATCTTGTTTTCTTCCAGTAAAAAGTAGAGAGCAAAACATCATCTTCACGGAACATCAGTTTTCAATTTCCGTTCGATTCTACTCCCTCAGTCTCGAGTTTCGGTTTTCTTCCATCACAATTTTTTTTCATTTTTCAATTTAAAATTCACTTCTCATTATTTCTTTTCCATTCACATCATCATCATCATCATCTCCTTTTTTTATCCCTCTCCTTTTTCTTTTTTGAATTCTGCAATTCCTAATTACCAGATGTATAAACACAAATGAATGAGGGACACCACCCAAGTGGCTGAATCATCGAGTGAGAAATTCGCCATTTTTCTTATATTCGATCTTTTTAATGAGGTCAGGCTGGAGAGGTAATAAGCTGTGCAATTTGGTGAATGCGAAAATCATATTGGAGGAAAAATGCAAAAAAAAAATCTTAAAGGAGGCAAGACAGCAAAAATTTCGGGGGCAGTTCGGGGGACGAAATCGCGCCGCGCTTATGTAGACCATTATGTAGATCAATTCTGAAATTTCCGAACGTCTGGAATTCTGAAACTCCGAGACCTTGAAACTCTTAGATTATGAACATTTAAGAGTATCTGAAATTTTGAAATACTGAAACTCCTAAAATTCTGAAATTCGAAAATTCTGAAATTCTGAAATTCTGAAACCCTGAAATTCCGAAACTCTGAAATTCTAAATTTCTAAAATTCTGTAATTCTGAAATCAGGAAATTCTGAAGTTCATAGATTCGGAGATTTCGAAATTCTGAAATTCGGAGACTATGAAATTCTGAAATTCAGAAATTCTGTAATTCTGAAATCAGGAAATTCTGAAGTTCTGATGTTCTGATATTCTGAGCGTTTGGAATTCTGAAAATCTGAAATTCTAGGATTCTGAGATTTCGAAATTCTGAA</canonical>
            <polymorphic>TCCGAACATCCCCGATGTGTCCAACGACGTCTCCAGAATCACCAAAAATTCTAGAACAGCTTTCCCCGTATGGCACCCTATTTCCATGTTCTTCCATCTTGTTTTCTTCCAGTAAAAAGTAGAGAGCAAAACATCATCTTCACGGAACATCAGTTTTCAATTTCCGTTCGATTCTACTCCCTCAGTCTCGAGTTTCGGTTTTCTTCCATCACAATTTTTTTTCATTTTTCAATTTAAAATTCACTTCTCATTATTTCTTTTCCATTCACATCATCATCATCATCATCTCCTTTTTTTATCCCTCTCCTTTTTCTTTTTTGAATTCTGCAATTCCTAATTACCAGATGTATAAACACAAATGAATGAGGGACACCACCCAAGTGGCTGAATCATCGAGTGAGAAATTCGCCATTTTTCTTATATTCGATCTTTTTAATGAGGTCAGGCTGGAGAGGTAATAAGCTGTGCAATTTGGTGAATGCGAAAATCATATTGGAGGWAAAATGCAAAAAAAAAATCTTAAAGGAGGCAAGACAGCAAAAATTTCGGGGGCAGTTCGGGGGACGAAATCGCGCCGCGCTTATGTAGACCATTATGTAGATCAATTCTGAAATTTCCGAACGTCTGGAATTCTGAAACTCCGAGACCTTGAAACTCTTAGATTATGAACATTTAAGAGTATCTGAAATTTTGAAATACTGAAACTCCTAAAATTCTGAAATTCGAAAATTCTGAAATTCTGAAATTCTGAAACCCTGAAATTCCGAAACTCTGAAATTCTAAATTTCTAAAATTCTGTAATTCTGAAATCAGGAAATTCTGAAGTTCATAGATTCGGAGATTTCGAAATTCTGAAATTCGGAGACTATGAAATTCTGAAATTCAGAAATTCTGTAATTCTGAAATCAGGAAATTCTGAAGTTCTGATGTTCTGATATTCTGAGCGTTTGGAATTCTGAAAATCTGAAATTCTAGGATTCTGAGATTTCGAAATTCTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCGCCATTTTTCTTATATT</pcr_primer_p1>
		<pcr_primer_p2>GGAAATTTCAGAATTGATCTACA</pcr_primer_p2>
		<pcr_amplicon_size>217</pcr_amplicon_size>
		<canonical_amplicon>AAATTCGCCATTTTTCTTATATTCGATCTTTTTAATGAGGTCAGGCTGGAGAGGTAATAAGCTGTGCAATTTGGTGAATGCGAAAATCATATTGGAGGAAAAATGCAAAAAAAAAATCTTAAAGGAGGCAAGACAGCAAAAATTTCGGGGGCAGTTCGGGGGACGAAATCGCGCCGCGCTTATGTAGACCATTATGTAGATCAATTCTGAAATTTCC</canonical_amplicon>
		<polymorphic_amplicon>AAATTCGCCATTTTTCTTATATTCGATCTTTTTAATGAGGTCAGGCTGGAGAGGTAATAAGCTGTGCAATTTGGTGAATGCGAAAATCATATTGGAGGWAAAATGCAAAAAAAAAATCTTAAAGGAGGCAAGACAGCAAAAATTTCGGGGGCAGTTCGGGGGACGAAATCGCGCCGCGCTTATGTAGACCATTATGTAGATCAATTCTGAAATTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25635</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>194334</contig_pos>
        <strand></strand>
        <context>CAAAAAAAAA[A/T]TCTTAAAGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCAATTTGGTGAATGCGAAAATCATATTGGAGGAAAAATGCAAAAAAAAA</left_flank>
        <right_flank>TCTTAAAGGAGGCAAGACAGCAAAAATTTCGGGGGCAGTTCGGGGGACGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCCAACGACGTCTCCAGAATCACCAAAAATTCTAGAACAGCTTTCCCCGTATGGCACCCTATTTCCATGTTCTTCCATCTTGTTTTCTTCCAGTAAAAAGTAGAGAGCAAAACATCATCTTCACGGAACATCAGTTTTCAATTTCCGTTCGATTCTACTCCCTCAGTCTCGAGTTTCGGTTTTCTTCCATCACAATTTTTTTTCATTTTTCAATTTAAAATTCACTTCTCATTATTTCTTTTCCATTCACATCATCATCATCATCATCTCCTTTTTTTATCCCTCTCCTTTTTCTTTTTTGAATTCTGCAATTCCTAATTACCAGATGTATAAACACAAATGAATGAGGGACACCACCCAAGTGGCTGAATCATCGAGTGAGAAATTCGCCATTTTTCTTATATTCGATCTTTTTAATGAGGTCAGGCTGGAGAGGTAATAAGCTGTGCAATTTGGTGAATGCGAAAATCATATTGGAGGAAAAATGCAAAAAAAAAATCTTAAAGGAGGCAAGACAGCAAAAATTTCGGGGGCAGTTCGGGGGACGAAATCGCGCCGCGCTTATGTAGACCATTATGTAGATCAATTCTGAAATTTCCGAACGTCTGGAATTCTGAAACTCCGAGACCTTGAAACTCTTAGATTATGAACATTTAAGAGTATCTGAAATTTTGAAATACTGAAACTCCTAAAATTCTGAAATTCGAAAATTCTGAAATTCTGAAATTCTGAAACCCTGAAATTCCGAAACTCTGAAATTCTAAATTTCTAAAATTCTGTAATTCTGAAATCAGGAAATTCTGAAGTTCATAGATTCGGAGATTTCGAAATTCTGAAATTCGGAGACTATGAAATTCTGAAATTCAGAAATTCTGTAATTCTGAAATCAGGAAATTCTGAAGTTCTGATGTTCTGATATTCTGAGCGTTTGGAATTCTGAAAATCTGAAATTCTAGGATTCTGAGATTTCGAAATTCTGAACTCCCGAATTTCTGGAA</canonical>
            <polymorphic>TGTCCAACGACGTCTCCAGAATCACCAAAAATTCTAGAACAGCTTTCCCCGTATGGCACCCTATTTCCATGTTCTTCCATCTTGTTTTCTTCCAGTAAAAAGTAGAGAGCAAAACATCATCTTCACGGAACATCAGTTTTCAATTTCCGTTCGATTCTACTCCCTCAGTCTCGAGTTTCGGTTTTCTTCCATCACAATTTTTTTTCATTTTTCAATTTAAAATTCACTTCTCATTATTTCTTTTCCATTCACATCATCATCATCATCATCTCCTTTTTTTATCCCTCTCCTTTTTCTTTTTTGAATTCTGCAATTCCTAATTACCAGATGTATAAACACAAATGAATGAGGGACACCACCCAAGTGGCTGAATCATCGAGTGAGAAATTCGCCATTTTTCTTATATTCGATCTTTTTAATGAGGTCAGGCTGGAGAGGTAATAAGCTGTGCAATTTGGTGAATGCGAAAATCATATTGGAGGAAAAATGCAAAAAAAAAWTCTTAAAGGAGGCAAGACAGCAAAAATTTCGGGGGCAGTTCGGGGGACGAAATCGCGCCGCGCTTATGTAGACCATTATGTAGATCAATTCTGAAATTTCCGAACGTCTGGAATTCTGAAACTCCGAGACCTTGAAACTCTTAGATTATGAACATTTAAGAGTATCTGAAATTTTGAAATACTGAAACTCCTAAAATTCTGAAATTCGAAAATTCTGAAATTCTGAAATTCTGAAACCCTGAAATTCCGAAACTCTGAAATTCTAAATTTCTAAAATTCTGTAATTCTGAAATCAGGAAATTCTGAAGTTCATAGATTCGGAGATTTCGAAATTCTGAAATTCGGAGACTATGAAATTCTGAAATTCAGAAATTCTGTAATTCTGAAATCAGGAAATTCTGAAGTTCTGATGTTCTGATATTCTGAGCGTTTGGAATTCTGAAAATCTGAAATTCTAGGATTCTGAGATTTCGAAATTCTGAACTCCCGAATTTCTGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCGCCATTTTTCTTATATT</pcr_primer_p1>
		<pcr_primer_p2>GGAAATTTCAGAATTGATCTACA</pcr_primer_p2>
		<pcr_amplicon_size>217</pcr_amplicon_size>
		<canonical_amplicon>AAATTCGCCATTTTTCTTATATTCGATCTTTTTAATGAGGTCAGGCTGGAGAGGTAATAAGCTGTGCAATTTGGTGAATGCGAAAATCATATTGGAGGAAAAATGCAAAAAAAAAATCTTAAAGGAGGCAAGACAGCAAAAATTTCGGGGGCAGTTCGGGGGACGAAATCGCGCCGCGCTTATGTAGACCATTATGTAGATCAATTCTGAAATTTCC</canonical_amplicon>
		<polymorphic_amplicon>AAATTCGCCATTTTTCTTATATTCGATCTTTTTAATGAGGTCAGGCTGGAGAGGTAATAAGCTGTGCAATTTGGTGAATGCGAAAATCATATTGGAGGAAAAATGCAAAAAAAAAWTCTTAAAGGAGGCAAGACAGCAAAAATTTCGGGGGCAGTTCGGGGGACGAAATCGCGCCGCGCTTATGTAGACCATTATGTAGATCAATTCTGAAATTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25636</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>195888</contig_pos>
        <strand>+</strand>
        <context>TTTTAAAATA[C/G]TTTTAGTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAAACATAAGTTTCGGATTTTTTTGAATTGAAGTGAGCATTTTAAAATA</left_flank>
        <right_flank>TTTTAGTTCTGTAGAATAATCAGAATTTCATGAGATTGAAAATACCGTAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTACTACTGCGCTGCTCATTCACTTGGCCAATACTTCATGCTTCATTGGCTCAAGAAGAAGAGGAGCACACATAACGCAAAACACTTTCCGGTGAGCTTCAAGAAGTACCAATATAAGCTTAATTAGAAAGAGAAAAGGAAAAAAACAATGTTTATGTGTGAGTGACCGATCTCACTTTTTGTTTCAATGATCCAGCTCAAAAGGAAATGGATCTAGGTCAGACGTGATGTTTTGAGGTACCGAAGGCCTGGAAATTTGCTCCATGACATTTCAAAAGGCTCTCTAGAGCGGTGACACTACGAAACCGATAAAAAACATTCAAAAAGATAAATTTCAGGCTCAAAAAACAATCATTGGGTTTTCGAATGTGTTTTTTGAGTCTGAAATTTATCTATTTGCCTGTATGATACCGGTTTCGAATTGACATTCTGAAACTCGATTTTTTTGAAAAACATAAGTTTCGGATTTTTTTGAATTGAAGTGAGCATTTTAAAATACTTTTAGTTCTGTAGAATAATCAGAATTTCATGAGATTGAAAATACCGTAGAACCTGAAATGGAAGGGCTCCCTAATTTTTCTACTTGGAACCAATTTATCTCAGTTCCTGTGAAAGATACAAAAAAGTTGTCAACTAATGAATTTTTTATCATAATATCACAAACATTTTATCAATTGACAAACTTTTGATATCTGTAATAGGAGCCGAGATAATTGAACTCACACTTGACTACAGGTTTTACGATATCTGAATTTTTCACTGCAAAGTCAGAACGCTTGTTTTAGCGGAATCAAATCCCAAGTACTGAAACTTTGAGATTCTGATATTTTGAAATTCTGAATTTTTGATATTGTGAAGATCTGAAATTTTGCGGTTCTTCAAATCTGAAATTCTGAAATTCTGGAAATCAAAAACTATAATATAAAAATTTGTGATTCTGTGATTCTGAAACCCTGAAATTTAAAAACCTGGCTTTCTTGAAATGATGAAATCTGAACT</canonical>
            <polymorphic>ACTACTACTGCGCTGCTCATTCACTTGGCCAATACTTCATGCTTCATTGGCTCAAGAAGAAGAGGAGCACACATAACGCAAAACACTTTCCGGTGAGCTTCAAGAAGTACCAATATAAGCTTAATTAGAAAGAGAAAAGGAAAAAAACAATGTTTATGTGTGAGTGACCGATCTCACTTTTTGTTTCAATGATCCAGCTCAAAAGGAAATGGATCTAGGTCAGACGTGATGTTTTGAGGTACCGAAGGCCTGGAAATTTGCTCCATGACATTTCAAAAGGCTCTCTAGAGCGGTGACACTACGAAACCGATAAAAAACATTCAAAAAGATAAATTTCAGGCTCAAAAAACAATCATTGGGTTTTCGAATGTGTTTTTTGAGTCTGAAATTTATCTATTTGCCTGTATGATACCGGTTTCGAATTGACATTCTGAAACTCGATTTTTTTGAAAAACATAAGTTTCGGATTTTTTTGAATTGAAGTGAGCATTTTAAAATASTTTTAGTTCTGTAGAATAATCAGAATTTCATGAGATTGAAAATACCGTAGAACCTGAAATGGAAGGGCTCCCTAATTTTTCTACTTGGAACCAATTTATCTCAGTTCCTGTGAAAGATACAAAAAAGTTGTCAACTAATGAATTTTTTATCATAATATCACAAACATTTTATCAATTGACAAACTTTTGATATCTGTAATAGGAGCCGAGATAATTGAACTCACACTTGACTACAGGTTTTACGATATCTGAATTTTTCACTGCAAAGTCAGAACGCTTGTTTTAGCGGAATCAAATCCCAAGTACTGAAACTTTGAGATTCTGATATTTTGAAATTCTGAATTTTTGATATTGTGAAGATCTGAAATTTTGCGGTTCTTCAAATCTGAAATTCTGAAATTCTGGAAATCAAAAACTATAATATAAAAATTTGTGATTCTGTGATTCTGAAACCCTGAAATTTAAAAACCTGGCTTTCTTGAAATGATGAAATCTGAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGAATTGACATTCTGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTGCAGTGAAAAATTCAGAT</pcr_primer_p2>
		<pcr_amplicon_size>351</pcr_amplicon_size>
		<canonical_amplicon>TTCGAATTGACATTCTGAAACTCGATTTTTTTGAAAAACATAAGTTTCGGATTTTTTTGAATTGAAGTGAGCATTTTAAAATACTTTTAGTTCTGTAGAATAATCAGAATTTCATGAGATTGAAAATACCGTAGAACCTGAAATGGAAGGGCTCCCTAATTTTTCTACTTGGAACCAATTTATCTCAGTTCCTGTGAAAGATACAAAAAAGTTGTCAACTAATGAATTTTTTATCATAATATCACAAACATTTTATCAATTGACAAACTTTTGATATCTGTAATAGGAGCCGAGATAATTGAACTCACACTTGACTACAGGTTTTACGATATCTGAATTTTTCACTGCAAA</canonical_amplicon>
		<polymorphic_amplicon>TTCGAATTGACATTCTGAAACTCGATTTTTTTGAAAAACATAAGTTTCGGATTTTTTTGAATTGAAGTGAGCATTTTAAAATASTTTTAGTTCTGTAGAATAATCAGAATTTCATGAGATTGAAAATACCGTAGAACCTGAAATGGAAGGGCTCCCTAATTTTTCTACTTGGAACCAATTTATCTCAGTTCCTGTGAAAGATACAAAAAAGTTGTCAACTAATGAATTTTTTATCATAATATCACAAACATTTTATCAATTGACAAACTTTTGATATCTGTAATAGGAGCCGAGATAATTGAACTCACACTTGACTACAGGTTTTACGATATCTGAATTTTTCACTGCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25637</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>196063</contig_pos>
        <strand></strand>
        <context>cattttatca[A/G]ttgacaaact</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTTGTCAACTAATGAATTTTTTATCATAATATCACAAACATTTTATCA</left_flank>
        <right_flank>TTGACAAACTTTTGATATCTGTAATAGGAGCCGAGATAATTGAACTCACA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTTTTGTTTCAATGATCCAGCTCAAAAGGAAATGGATCTAGGTCAGACGTGATGTTTTGAGGTACCGAAGGCCTGGAAATTTGCTCCATGACATTTCAAAAGGCTCTCTAGAGCGGTGACACTACGAAACCGATAAAAAACATTCAAAAAGATAAATTTCAGGCTCAAAAAACAATCATTGGGTTTTCGAATGTGTTTTTTGAGTCTGAAATTTATCTATTTGCCTGTATGATACCGGTTTCGAATTGACATTCTGAAACTCGATTTTTTTGAAAAACATAAGTTTCGGATTTTTTTGAATTGAAGTGAGCATTTTAAAATACTTTTAGTTCTGTAGAATAATCAGAATTTCATGAGATTGAAAATACCGTAGAACCTGAAATGGAAGGGCTCCCTAATTTTTCTACTTGGAACCAATTTATCTCAGTTCCTGTGAAAGATACAAAAAAGTTGTCAACTAATGAATTTTTTATCATAATATCACAAACATTTTATCAATTGACAAACTTTTGATATCTGTAATAGGAGCCGAGATAATTGAACTCACACTTGACTACAGGTTTTACGATATCTGAATTTTTCACTGCAAAGTCAGAACGCTTGTTTTAGCGGAATCAAATCCCAAGTACTGAAACTTTGAGATTCTGATATTTTGAAATTCTGAATTTTTGATATTGTGAAGATCTGAAATTTTGCGGTTCTTCAAATCTGAAATTCTGAAATTCTGGAAATCAAAAACTATAATATAAAAATTTGTGATTCTGTGATTCTGAAACCCTGAAATTTAAAAACCTGGCTTTCTTGAAATGATGAAATCTGAACTTCTGAAGTTTTGAATATTTGGAATTTCTAGAAATCTGATGTTCTGAATTTCTGAAAATCGGAAATGCTGAAACTCTGAATTCCTCTCCACATCTTTAAAACCAGATTCTGAAACTACTCGAGACGAAAATAGAACCTAAAAATTTAATCTGAAACGACAAGAATTTGAAATTATT</canonical>
            <polymorphic>ACTTTTTGTTTCAATGATCCAGCTCAAAAGGAAATGGATCTAGGTCAGACGTGATGTTTTGAGGTACCGAAGGCCTGGAAATTTGCTCCATGACATTTCAAAAGGCTCTCTAGAGCGGTGACACTACGAAACCGATAAAAAACATTCAAAAAGATAAATTTCAGGCTCAAAAAACAATCATTGGGTTTTCGAATGTGTTTTTTGAGTCTGAAATTTATCTATTTGCCTGTATGATACCGGTTTCGAATTGACATTCTGAAACTCGATTTTTTTGAAAAACATAAGTTTCGGATTTTTTTGAATTGAAGTGAGCATTTTAAAATACTTTTAGTTCTGTAGAATAATCAGAATTTCATGAGATTGAAAATACCGTAGAACCTGAAATGGAAGGGCTCCCTAATTTTTCTACTTGGAACCAATTTATCTCAGTTCCTGTGAAAGATACAAAAAAGTTGTCAACTAATGAATTTTTTATCATAATATCACAAACATTTTATCARTTGACAAACTTTTGATATCTGTAATAGGAGCCGAGATAATTGAACTCACACTTGACTACAGGTTTTACGATATCTGAATTTTTCACTGCAAAGTCAGAACGCTTGTTTTAGCGGAATCAAATCCCAAGTACTGAAACTTTGAGATTCTGATATTTTGAAATTCTGAATTTTTGATATTGTGAAGATCTGAAATTTTGCGGTTCTTCAAATCTGAAATTCTGAAATTCTGGAAATCAAAAACTATAATATAAAAATTTGTGATTCTGTGATTCTGAAACCCTGAAATTTAAAAACCTGGCTTTCTTGAAATGATGAAATCTGAACTTCTGAAGTTTTGAATATTTGGAATTTCTAGAAATCTGATGTTCTGAATTTCTGAAAATCGGAAATGCTGAAACTCTGAATTCCTCTCCACATCTTTAAAACCAGATTCTGAAACTACTCGAGACGAAAATAGAACCTAAAAATTTAATCTGAAACGACAAGAATTTGAAATTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>82 79 77 63 63 55 55 50 48 48 39 39 34 33 32 31 30 25 24 24 21 19 8 7 7 7</canonical_bands>
                <polymorphic_bands>82 79 77 72 63 63 55 55 50 48 48 39 34 32 31 30 25 24 24 21 19 8 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTCTGTAGAATAATCAGAATTTCA</pcr_primer_p1>
		<pcr_primer_p2>CTAAAACAAGCGTTCTGACTTT</pcr_primer_p2>
		<pcr_amplicon_size>282</pcr_amplicon_size>
		<canonical_amplicon>AGTTCTGTAGAATAATCAGAATTTCATGAGATTGAAAATACCGTAGAACCTGAAATGGAAGGGCTCCCTAATTTTTCTACTTGGAACCAATTTATCTCAGTTCCTGTGAAAGATACAAAAAAGTTGTCAACTAATGAATTTTTTATCATAATATCACAAACATTTTATCAATTGACAAACTTTTGATATCTGTAATAGGAGCCGAGATAATTGAACTCACACTTGACTACAGGTTTTACGATATCTGAATTTTTCACTGCAAAGTCAGAACGCTTGTTTTAG</canonical_amplicon>
		<polymorphic_amplicon>AGTTCTGTAGAATAATCAGAATTTCATGAGATTGAAAATACCGTAGAACCTGAAATGGAAGGGCTCCCTAATTTTTCTACTTGGAACCAATTTATCTCAGTTCCTGTGAAAGATACAAAAAAGTTGTCAACTAATGAATTTTTTATCATAATATCACAAACATTTTATCARTTGACAAACTTTTGATATCTGTAATAGGAGCCGAGATAATTGAACTCACACTTGACTACAGGTTTTACGATATCTGAATTTTTCACTGCAAAGTCAGAACGCTTGTTTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25638</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>204226</contig_pos>
        <strand>+</strand>
        <context>CGCTAGATTA[A/G]TTTAATGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAGGATTTAGAACGGAAGTACTTTCAGACTAGTTCGGTTCGCTAGATTA</left_flank>
        <right_flank>TTTAATGTTTTTTTGGAGGGTTTAGTTCACTTGGTTTCAGTGTGAGGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTTCTCCTCCTTTTTTCAACCCATCATCTCGTTAATTGTGTGTTTCCCTTCCCGACCGATTACCATTCTAGTCACGAACTTTGATGACTTCCTTCCCCTTCCTTCTACTGCAGAAGACGTCGTCAAGTGATGACTGGTGACCCCGTTGAACTATCACTTTCTCTTTTTTCTTGAGAAATGAGTTAAACGACACGAAGCTTTTGGCCTGACTGCTTCTGTTGCTTCTGCTGTCTTTTTTCCCGTTTCAATGCATTTTTTAGTTCTCGTTCCTTCATTTTTCTTCGTCTTCTTGTGCCATTTGTCTCTTGTTCCATTTGTTATTACCTGCCAAAACCGTGGAGACACACAAACCAATCTCGAACACGTCTCCTGAATTCTCGTGTTTAGATCTTTGAAAAGCAGTTGAGCTGATGCACGTTTTTCTTCAGTTTTACTGCCCCGAAGTGAGGAGGATTTAGAACGGAAGTACTTTCAGACTAGTTCGGTTCGCTAGATTAATTTAATGTTTTTTTGGAGGGTTTAGTTCACTTGGTTTCAGTGTGAGGATTCCAATTTCAAGGAAGTCTTTCTCAGTTACATAGGTTTGAAAAGAGGTAGTACTGTAGCTAAGATTCAAAATTCTAAGATCCTAACTATCGAGCGCTAAAACGCGTACTCTTGAGAAGTTTTCCTTCGGATCATCACTCAAATTTTGAAAGTTACTTTAAAATTACATCTCGGTAAGATTCCAATGACTACGATATCCATATTTTGACTACAACATCCTAGAAGTTCATAATTTCCTCGTTTTCACATTTTTTCTGGAAATGTCCGGATTCCGGATTCCGTATTCCGCTTCCCGAATGTGTTATTCCGGAAATATAATTTTTGTGAGGTCTCTAGGGAGGCACTTCATTTAGAGGGACCATGTAATGCATGTTTGACGGTTACTTGGATATGATGTACTTAAAAAGCCCTACAAAATGACGCTATTTAGATTACTGTAACTTGCCTATGAA</canonical>
            <polymorphic>TACTTCTCCTCCTTTTTTCAACCCATCATCTCGTTAATTGTGTGTTTCCCTTCCCGACCGATTACCATTCTAGTCACGAACTTTGATGACTTCCTTCCCCTTCCTTCTACTGCAGAAGACGTCGTCAAGTGATGACTGGTGACCCCGTTGAACTATCACTTTCTCTTTTTTCTTGAGAAATGAGTTAAACGACACGAAGCTTTTGGCCTGACTGCTTCTGTTGCTTCTGCTGTCTTTTTTCCCGTTTCAATGCATTTTTTAGTTCTCGTTCCTTCATTTTTCTTCGTCTTCTTGTGCCATTTGTCTCTTGTTCCATTTGTTATTACCTGCCAAAACCGTGGAGACACACAAACCAATCTCGAACACGTCTCCTGAATTCTCGTGTTTAGATCTTTGAAAAGCAGTTGAGCTGATGCACGTTTTTCTTCAGTTTTACTGCCCCGAAGTGAGGAGGATTTAGAACGGAAGTACTTTCAGACTAGTTCGGTTCGCTAGATTARTTTAATGTTTTTTTGGAGGGTTTAGTTCACTTGGTTTCAGTGTGAGGATTCCAATTTCAAGGAAGTCTTTCTCAGTTACATAGGTTTGAAAAGAGGTAGTACTGTAGCTAAGATTCAAAATTCTAAGATCCTAACTATCGAGCGCTAAAACGCGTACTCTTGAGAAGTTTTCCTTCGGATCATCACTCAAATTTTGAAAGTTACTTTAAAATTACATCTCGGTAAGATTCCAATGACTACGATATCCATATTTTGACTACAACATCCTAGAAGTTCATAATTTCCTCGTTTTCACATTTTTTCTGGAAATGTCCGGATTCCGGATTCCGTATTCCGCTTCCCGAATGTGTTATTCCGGAAATATAATTTTTGTGAGGTCTCTAGGGAGGCACTTCATTTAGAGGGACCATGTAATGCATGTTTGACGGTTACTTGGATATGATGTACTTAAAAAGCCCTACAAAATGACGCTATTTAGATTACTGTAACTTGCCTATGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>312 242 204 151 52 34 5</canonical_bands>
                <polymorphic_bands>317 242 204 151 52 34</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>339 136 124 86 71 69 66 54 35 20</canonical_bands>
                <polymorphic_bands>339 178 136 86 71 69 66 35 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTTAGATCTTTGAAAAGCAGT</pcr_primer_p1>
		<pcr_primer_p2>GGATCTTAGAATTTTGAATCTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTTTAGATCTTTGAAAAGCAGTTGAGCTGATGCACGTTTTTCTTCAGTTTTACTGCCCCGAAGTGAGGAGGATTTAGAACGGAAGTACTTTCAGACTAGTTCGGTTCGCTAGATTAATTTAATGTTTTTTTGGAGGGTTTAGTTCACTTGGTTTCAGTGTGAGGATTCCAATTTCAAGGAAGTCTTTCTCAGTTACATAGGTTTGAAAAGAGGTAGTACTGTAGCTAAGATTCAAAATTCTAAGATCC</canonical_amplicon>
		<polymorphic_amplicon>TGTTTAGATCTTTGAAAAGCAGTTGAGCTGATGCACGTTTTTCTTCAGTTTTACTGCCCCGAAGTGAGGAGGATTTAGAACGGAAGTACTTTCAGACTAGTTCGGTTCGCTAGATTARTTTAATGTTTTTTTGGAGGGTTTAGTTCACTTGGTTTCAGTGTGAGGATTCCAATTTCAAGGAAGTCTTTCTCAGTTACATAGGTTTGAAAAGAGGTAGTACTGTAGCTAAGATTCAAAATTCTAAGATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25639</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>204695</contig_pos>
        <strand></strand>
        <context>tacaaaatga[C/T]gctatttaga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTTTGACGGTTACTTGGATATGATGTACTTAAAAAGCCCTACAAAATGA</left_flank>
        <right_flank>GCTATTTAGATTACTGTAACTTGCCTATGAAGAAAATGACAAGGCAGAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTCAGACTAGTTCGGTTCGCTAGATTAATTTAATGTTTTTTTGGAGGGTTTAGTTCACTTGGTTTCAGTGTGAGGATTCCAATTTCAAGGAAGTCTTTCTCAGTTACATAGGTTTGAAAAGAGGTAGTACTGTAGCTAAGATTCAAAATTCTAAGATCCTAACTATCGAGCGCTAAAACGCGTACTCTTGAGAAGTTTTCCTTCGGATCATCACTCAAATTTTGAAAGTTACTTTAAAATTACATCTCGGTAAGATTCCAATGACTACGATATCCATATTTTGACTACAACATCCTAGAAGTTCATAATTTCCTCGTTTTCACATTTTTTCTGGAAATGTCCGGATTCCGGATTCCGTATTCCGCTTCCCGAATGTGTTATTCCGGAAATATAATTTTTGTGAGGTCTCTAGGGAGGCACTTCATTTAGAGGGACCATGTAATGCATGTTTGACGGTTACTTGGATATGATGTACTTAAAAAGCCCTACAAAATGACGCTATTTAGATTACTGTAACTTGCCTATGAAGAAAATGACAAGGCAGAAACCTGCTGAGCTACGCGGTTGATCTTTTTAACTGTATTACAGCCCTGTAACGTTGCTCATAGGCAAGATACAGTATATCAAATGGTATCATTGTGTATTCTTTGAAATTTTCTATCATATCCAGTTTATTTGGTCCAAAACTATTCATCTTAAAAGAAACTATGACAGTGTCCGTTTTGGATCCGTTTTTGGGCCGTTTTACATTTAAACGGTTAAAAAAATCATGAGAAGTAGTAAACCTAGATGAGGTTCTCAAGCTGCAACATTTTAAGAATCCTTTTCTCTCTCTCTCCCTGTCTCTCACTCACTCACTCATAATTCCTATCAACCATACCTACCCAATTTATGAGCACAGCTTTACAGTTCAACGTGTTGTAATTATTTCTGTCGCCCCAATGTCTCTCTCTCTTTCTCCATTCACTTTTGTGTTGAATCAGTGTGAAGTCTGACC</canonical>
            <polymorphic>ACTTTCAGACTAGTTCGGTTCGCTAGATTAATTTAATGTTTTTTTGGAGGGTTTAGTTCACTTGGTTTCAGTGTGAGGATTCCAATTTCAAGGAAGTCTTTCTCAGTTACATAGGTTTGAAAAGAGGTAGTACTGTAGCTAAGATTCAAAATTCTAAGATCCTAACTATCGAGCGCTAAAACGCGTACTCTTGAGAAGTTTTCCTTCGGATCATCACTCAAATTTTGAAAGTTACTTTAAAATTACATCTCGGTAAGATTCCAATGACTACGATATCCATATTTTGACTACAACATCCTAGAAGTTCATAATTTCCTCGTTTTCACATTTTTTCTGGAAATGTCCGGATTCCGGATTCCGTATTCCGCTTCCCGAATGTGTTATTCCGGAAATATAATTTTTGTGAGGTCTCTAGGGAGGCACTTCATTTAGAGGGACCATGTAATGCATGTTTGACGGTTACTTGGATATGATGTACTTAAAAAGCCCTACAAAATGAYGCTATTTAGATTACTGTAACTTGCCTATGAAGAAAATGACAAGGCAGAAACCTGCTGAGCTACGCGGTTGATCTTTTTAACTGTATTACAGCCCTGTAACGTTGCTCATAGGCAAGATACAGTATATCAAATGGTATCATTGTGTATTCTTTGAAATTTTCTATCATATCCAGTTTATTTGGTCCAAAACTATTCATCTTAAAAGAAACTATGACAGTGTCCGTTTTGGATCCGTTTTTGGGCCGTTTTACATTTAAACGGTTAAAAAAATCATGAGAAGTAGTAAACCTAGATGAGGTTCTCAAGCTGCAACATTTTAAGAATCCTTTTCTCTCTCTCTCCCTGTCTCTCACTCACTCACTCATAATTCCTATCAACCATACCTACCCAATTTATGAGCACAGCTTTACAGTTCAACGTGTTGTAATTATTTCTGTCGCCCCAATGTCTCTCTCTCTTTCTCCATTCACTTTTGTGTTGAATCAGTGTGAAGTCTGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCATTTAGAGGGACCATGT</pcr_primer_p1>
		<pcr_primer_p2>TAGGTTTACTACTTCTCATGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>369</pcr_amplicon_size>
		<canonical_amplicon>CTTCATTTAGAGGGACCATGTAATGCATGTTTGACGGTTACTTGGATATGATGTACTTAAAAAGCCCTACAAAATGACGCTATTTAGATTACTGTAACTTGCCTATGAAGAAAATGACAAGGCAGAAACCTGCTGAGCTACGCGGTTGATCTTTTTAACTGTATTACAGCCCTGTAACGTTGCTCATAGGCAAGATACAGTATATCAAATGGTATCATTGTGTATTCTTTGAAATTTTCTATCATATCCAGTTTATTTGGTCCAAAACTATTCATCTTAAAAGAAACTATGACAGTGTCCGTTTTGGATCCGTTTTTGGGCCGTTTTACATTTAAACGGTTAAAAAAATCATGAGAAGTAGTAAACCTA</canonical_amplicon>
		<polymorphic_amplicon>CTTCATTTAGAGGGACCATGTAATGCATGTTTGACGGTTACTTGGATATGATGTACTTAAAAAGCCCTACAAAATGAYGCTATTTAGATTACTGTAACTTGCCTATGAAGAAAATGACAAGGCAGAAACCTGCTGAGCTACGCGGTTGATCTTTTTAACTGTATTACAGCCCTGTAACGTTGCTCATAGGCAAGATACAGTATATCAAATGGTATCATTGTGTATTCTTTGAAATTTTCTATCATATCCAGTTTATTTGGTCCAAAACTATTCATCTTAAAAGAAACTATGACAGTGTCCGTTTTGGATCCGTTTTTGGGCCGTTTTACATTTAAACGGTTAAAAAAATCATGAGAAGTAGTAAACCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25640</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>204719</contig_pos>
        <strand></strand>
        <context>ctgtaacttg[C/T]ctatgaagaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTACTTAAAAAGCCCTACAAAATGACGCTATTTAGATTACTGTAACTTG</left_flank>
        <right_flank>CTATGAAGAAAATGACAAGGCAGAAACCTGCTGAGCTACGCGGTTGATCT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATTAATTTAATGTTTTTTTGGAGGGTTTAGTTCACTTGGTTTCAGTGTGAGGATTCCAATTTCAAGGAAGTCTTTCTCAGTTACATAGGTTTGAAAAGAGGTAGTACTGTAGCTAAGATTCAAAATTCTAAGATCCTAACTATCGAGCGCTAAAACGCGTACTCTTGAGAAGTTTTCCTTCGGATCATCACTCAAATTTTGAAAGTTACTTTAAAATTACATCTCGGTAAGATTCCAATGACTACGATATCCATATTTTGACTACAACATCCTAGAAGTTCATAATTTCCTCGTTTTCACATTTTTTCTGGAAATGTCCGGATTCCGGATTCCGTATTCCGCTTCCCGAATGTGTTATTCCGGAAATATAATTTTTGTGAGGTCTCTAGGGAGGCACTTCATTTAGAGGGACCATGTAATGCATGTTTGACGGTTACTTGGATATGATGTACTTAAAAAGCCCTACAAAATGACGCTATTTAGATTACTGTAACTTGCCTATGAAGAAAATGACAAGGCAGAAACCTGCTGAGCTACGCGGTTGATCTTTTTAACTGTATTACAGCCCTGTAACGTTGCTCATAGGCAAGATACAGTATATCAAATGGTATCATTGTGTATTCTTTGAAATTTTCTATCATATCCAGTTTATTTGGTCCAAAACTATTCATCTTAAAAGAAACTATGACAGTGTCCGTTTTGGATCCGTTTTTGGGCCGTTTTACATTTAAACGGTTAAAAAAATCATGAGAAGTAGTAAACCTAGATGAGGTTCTCAAGCTGCAACATTTTAAGAATCCTTTTCTCTCTCTCTCCCTGTCTCTCACTCACTCACTCATAATTCCTATCAACCATACCTACCCAATTTATGAGCACAGCTTTACAGTTCAACGTGTTGTAATTATTTCTGTCGCCCCAATGTCTCTCTCTCTTTCTCCATTCACTTTTGTGTTGAATCAGTGTGAAGTCTGACCTGCTAAGACCCCCACTCACAATCC</canonical>
            <polymorphic>AGATTAATTTAATGTTTTTTTGGAGGGTTTAGTTCACTTGGTTTCAGTGTGAGGATTCCAATTTCAAGGAAGTCTTTCTCAGTTACATAGGTTTGAAAAGAGGTAGTACTGTAGCTAAGATTCAAAATTCTAAGATCCTAACTATCGAGCGCTAAAACGCGTACTCTTGAGAAGTTTTCCTTCGGATCATCACTCAAATTTTGAAAGTTACTTTAAAATTACATCTCGGTAAGATTCCAATGACTACGATATCCATATTTTGACTACAACATCCTAGAAGTTCATAATTTCCTCGTTTTCACATTTTTTCTGGAAATGTCCGGATTCCGGATTCCGTATTCCGCTTCCCGAATGTGTTATTCCGGAAATATAATTTTTGTGAGGTCTCTAGGGAGGCACTTCATTTAGAGGGACCATGTAATGCATGTTTGACGGTTACTTGGATATGATGTACTTAAAAAGCCCTACAAAATGACGCTATTTAGATTACTGTAACTTGYCTATGAAGAAAATGACAAGGCAGAAACCTGCTGAGCTACGCGGTTGATCTTTTTAACTGTATTACAGCCCTGTAACGTTGCTCATAGGCAAGATACAGTATATCAAATGGTATCATTGTGTATTCTTTGAAATTTTCTATCATATCCAGTTTATTTGGTCCAAAACTATTCATCTTAAAAGAAACTATGACAGTGTCCGTTTTGGATCCGTTTTTGGGCCGTTTTACATTTAAACGGTTAAAAAAATCATGAGAAGTAGTAAACCTAGATGAGGTTCTCAAGCTGCAACATTTTAAGAATCCTTTTCTCTCTCTCTCCCTGTCTCTCACTCACTCACTCATAATTCCTATCAACCATACCTACCCAATTTATGAGCACAGCTTTACAGTTCAACGTGTTGTAATTATTTCTGTCGCCCCAATGTCTCTCTCTCTTTCTCCATTCACTTTTGTGTTGAATCAGTGTGAAGTCTGACCTGCTAAGACCCCCACTCACAATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCATTTAGAGGGACCATGT</pcr_primer_p1>
		<pcr_primer_p2>TAGGTTTACTACTTCTCATGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>369</pcr_amplicon_size>
		<canonical_amplicon>CTTCATTTAGAGGGACCATGTAATGCATGTTTGACGGTTACTTGGATATGATGTACTTAAAAAGCCCTACAAAATGACGCTATTTAGATTACTGTAACTTGCCTATGAAGAAAATGACAAGGCAGAAACCTGCTGAGCTACGCGGTTGATCTTTTTAACTGTATTACAGCCCTGTAACGTTGCTCATAGGCAAGATACAGTATATCAAATGGTATCATTGTGTATTCTTTGAAATTTTCTATCATATCCAGTTTATTTGGTCCAAAACTATTCATCTTAAAAGAAACTATGACAGTGTCCGTTTTGGATCCGTTTTTGGGCCGTTTTACATTTAAACGGTTAAAAAAATCATGAGAAGTAGTAAACCTA</canonical_amplicon>
		<polymorphic_amplicon>CTTCATTTAGAGGGACCATGTAATGCATGTTTGACGGTTACTTGGATATGATGTACTTAAAAAGCCCTACAAAATGACGCTATTTAGATTACTGTAACTTGYCTATGAAGAAAATGACAAGGCAGAAACCTGCTGAGCTACGCGGTTGATCTTTTTAACTGTATTACAGCCCTGTAACGTTGCTCATAGGCAAGATACAGTATATCAAATGGTATCATTGTGTATTCTTTGAAATTTTCTATCATATCCAGTTTATTTGGTCCAAAACTATTCATCTTAAAAGAAACTATGACAGTGTCCGTTTTGGATCCGTTTTTGGGCCGTTTTACATTTAAACGGTTAAAAAAATCATGAGAAGTAGTAAACCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25641</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>221332</contig_pos>
        <strand>+</strand>
        <context>CGGAACCTTT[C/T]AAAACAATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATGGAAAACGGGCGGAACATTAAAAAACTATGCTTGTTCGGAACCTTT</left_flank>
        <right_flank>AAAACAATAAAATGAAAAGGAAAACCAAAATGGCTGGGCGGCAAAGAGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGAGAGCCGACTCAGCATGTTTGGAAGTTGTTGGTGGTTGAAAAACCCAGGAAGCCTTTGGAGGCTCTGAAATGGCCAAGGATTTGAACTTTCGGCACCAGAAAATGTGTTGTAACACGTGAAACAGGCTCTGATAAGCCGATAGGTGACAATGGGGTGAAAATGAGGTGAAAGATAAGGCGAGAGGAGTACAATTTCTTCTGATAAAAATATGAAATATGGAGATGGAAATGTTGCAGACGAATGTGTCATGTGTGGGAGAAATCAGCAAAACTTTTTTGTTTCGGATGTGAATAAGCATGGAAATCGATAGAATCCAATGCGTTAGATGCAAAAGGGAGAAGCCAGAAAAAGGCGATGTCCCTTCTTTTCCCGACATGTATCGATCTATTCGTATTCATCACGGATAAACTGAGTGAAGTGCACTTTGAAGAGACATAGGGAACGAAATGGAAAACGGGCGGAACATTAAAAAACTATGCTTGTTCGGAACCTTTGAAAACAATAAAATGAAAAGGAAAACCAAAATGGCTGGGCGGCAAAGAGTGCTCAAGAGTCATTGTGAGGGGGAGAGCAGGAAGAAAAACAAAAAATGCTCGAAGTAGAGAGAAAGAGGAGGAGAGAAAAAGAGGAAAAAAGTTTTTGGAATATAAAGTCAGTCTAAAGGTATCTTTTCCTGGTATTTATTTACAAGGAAATTTTCAAAAACATGTTGTTGATGACCTTGCCATCGAATTAGTCAATTATCGGACAAACATCAGTCTTTGGGTTTTGATCAACATATTTCTATTGTCTTGACTGTCATGAGCTCCTTGTATTGCATGAAATCGTATTTTTAAACATATTTCTAGTATCGAAAAACAGATGTCTGAATCAAATCGGTTTGAAAGACGGCACAGCTGTTGGCTCAAGCACGAGTGCGGAACAAAATAGATGAAGACAAAAACCCAGAAGTAAATATCAAACAAGTCAATTGTGATCTTTGTGCTGACAAGAAA</canonical>
            <polymorphic>GGTGAGAGCCGACTCAGCATGTTTGGAAGTTGTTGGTGGTTGAAAAACCCAGGAAGCCTTTGGAGGCTCTGAAATGGCCAAGGATTTGAACTTTCGGCACCAGAAAATGTGTTGTAACACGTGAAACAGGCTCTGATAAGCCGATAGGTGACAATGGGGTGAAAATGAGGTGAAAGATAAGGCGAGAGGAGTACAATTTCTTCTGATAAAAATATGAAATATGGAGATGGAAATGTTGCAGACGAATGTGTCATGTGTGGGAGAAATCAGCAAAACTTTTTTGTTTCGGATGTGAATAAGCATGGAAATCGATAGAATCCAATGCGTTAGATGCAAAAGGGAGAAGCCAGAAAAAGGCGATGTCCCTTCTTTTCCCGACATGTATCGATCTATTCGTATTCATCACGGATAAACTGAGTGAAGTGCACTTTGAAGAGACATAGGGAACGAAATGGAAAACGGGCGGAACATTAAAAAACTATGCTTGTTCGGAACCTTTYAAAACAATAAAATGAAAAGGAAAACCAAAATGGCTGGGCGGCAAAGAGTGCTCAAGAGTCATTGTGAGGGGGAGAGCAGGAAGAAAAACAAAAAATGCTCGAAGTAGAGAGAAAGAGGAGGAGAGAAAAAGAGGAAAAAAGTTTTTGGAATATAAAGTCAGTCTAAAGGTATCTTTTCCTGGTATTTATTTACAAGGAAATTTTCAAAAACATGTTGTTGATGACCTTGCCATCGAATTAGTCAATTATCGGACAAACATCAGTCTTTGGGTTTTGATCAACATATTTCTATTGTCTTGACTGTCATGAGCTCCTTGTATTGCATGAAATCGTATTTTTAAACATATTTCTAGTATCGAAAAACAGATGTCTGAATCAAATCGGTTTGAAAGACGGCACAGCTGTTGGCTCAAGCACGAGTGCGGAACAAAATAGATGAAGACAAAAACCCAGAAGTAAATATCAAACAAGTCAATTGTGATCTTTGTGCTGACAAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGACATAGGGAACGAAATG</pcr_primer_p1>
		<pcr_primer_p2>ACCAGGAAAAGATACCTTTAGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAGACATAGGGAACGAAATGGAAAACGGGCGGAACATTAAAAAACTATGCTTGTTCGGAACCTTTGAAAACAATAAAATGAAAAGGAAAACCAAAATGGCTGGGCGGCAAAGAGTGCTCAAGAGTCATTGTGAGGGGGAGAGCAGGAAGAAAAACAAAAAATGCTCGAAGTAGAGAGAAAGAGGAGGAGAGAAAAAGAGGAAAAAAGTTTTTGGAATATAAAGTCAGTCTAAAGGTATCTTTTCCTGGT</canonical_amplicon>
		<polymorphic_amplicon>AGAGACATAGGGAACGAAATGGAAAACGGGCGGAACATTAAAAAACTATGCTTGTTCGGAACCTTTYAAAACAATAAAATGAAAAGGAAAACCAAAATGGCTGGGCGGCAAAGAGTGCTCAAGAGTCATTGTGAGGGGGAGAGCAGGAAGAAAAACAAAAAATGCTCGAAGTAGAGAGAAAGAGGAGGAGAGAAAAAGAGGAAAAAAGTTTTTGGAATATAAAGTCAGTCTAAAGGTATCTTTTCCTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25642</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>221455</contig_pos>
        <strand></strand>
        <context>AAGAGGAGGA[G/A]AGAAAAAGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGAGCAGGAAGAAAAACAAAAAATGCTCGAAGTAGAGAGAAAGAGGAGGA</left_flank>
        <right_flank>AGAAAAAGAGGAAAAAAGTTTTTGGAATATAAAGTCAGTCTAAAGGTATC</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACAGGCTCTGATAAGCCGATAGGTGACAATGGGGTGAAAATGAGGTGAAAGATAAGGCGAGAGGAGTACAATTTCTTCTGATAAAAATATGAAATATGGAGATGGAAATGTTGCAGACGAATGTGTCATGTGTGGGAGAAATCAGCAAAACTTTTTTGTTTCGGATGTGAATAAGCATGGAAATCGATAGAATCCAATGCGTTAGATGCAAAAGGGAGAAGCCAGAAAAAGGCGATGTCCCTTCTTTTCCCGACATGTATCGATCTATTCGTATTCATCACGGATAAACTGAGTGAAGTGCACTTTGAAGAGACATAGGGAACGAAATGGAAAACGGGCGGAACATTAAAAAACTATGCTTGTTCGGAACCTTTGAAAACAATAAAATGAAAAGGAAAACCAAAATGGCTGGGCGGCAAAGAGTGCTCAAGAGTCATTGTGAGGGGGAGAGCAGGAAGAAAAACAAAAAATGCTCGAAGTAGAGAGAAAGAGGAGGAGAGAAAAAGAGGAAAAAAGTTTTTGGAATATAAAGTCAGTCTAAAGGTATCTTTTCCTGGTATTTATTTACAAGGAAATTTTCAAAAACATGTTGTTGATGACCTTGCCATCGAATTAGTCAATTATCGGACAAACATCAGTCTTTGGGTTTTGATCAACATATTTCTATTGTCTTGACTGTCATGAGCTCCTTGTATTGCATGAAATCGTATTTTTAAACATATTTCTAGTATCGAAAAACAGATGTCTGAATCAAATCGGTTTGAAAGACGGCACAGCTGTTGGCTCAAGCACGAGTGCGGAACAAAATAGATGAAGACAAAAACCCAGAAGTAAATATCAAACAAGTCAATTGTGATCTTTGTGCTGACAAGAAATTTAAAATTTCCACTATTAATTCGGGGGGCTTTGTATTTTTTTTTTGAGCTCTCATTCCGTGTCAAATCGGAAAGATTCCACATGGGCGCATGTGGAGTGTGCACTTTTCAACAGACGAACTG</canonical>
            <polymorphic>AAACAGGCTCTGATAAGCCGATAGGTGACAATGGGGTGAAAATGAGGTGAAAGATAAGGCGAGAGGAGTACAATTTCTTCTGATAAAAATATGAAATATGGAGATGGAAATGTTGCAGACGAATGTGTCATGTGTGGGAGAAATCAGCAAAACTTTTTTGTTTCGGATGTGAATAAGCATGGAAATCGATAGAATCCAATGCGTTAGATGCAAAAGGGAGAAGCCAGAAAAAGGCGATGTCCCTTCTTTTCCCGACATGTATCGATCTATTCGTATTCATCACGGATAAACTGAGTGAAGTGCACTTTGAAGAGACATAGGGAACGAAATGGAAAACGGGCGGAACATTAAAAAACTATGCTTGTTCGGAACCTTTGAAAACAATAAAATGAAAAGGAAAACCAAAATGGCTGGGCGGCAAAGAGTGCTCAAGAGTCATTGTGAGGGGGAGAGCAGGAAGAAAAACAAAAAATGCTCGAAGTAGAGAGAAAGAGGAGGARAGAAAAAGAGGAAAAAAGTTTTTGGAATATAAAGTCAGTCTAAAGGTATCTTTTCCTGGTATTTATTTACAAGGAAATTTTCAAAAACATGTTGTTGATGACCTTGCCATCGAATTAGTCAATTATCGGACAAACATCAGTCTTTGGGTTTTGATCAACATATTTCTATTGTCTTGACTGTCATGAGCTCCTTGTATTGCATGAAATCGTATTTTTAAACATATTTCTAGTATCGAAAAACAGATGTCTGAATCAAATCGGTTTGAAAGACGGCACAGCTGTTGGCTCAAGCACGAGTGCGGAACAAAATAGATGAAGACAAAAACCCAGAAGTAAATATCAAACAAGTCAATTGTGATCTTTGTGCTGACAAGAAATTTAAAATTTCCACTATTAATTCGGGGGGCTTTGTATTTTTTTTTTGAGCTCTCATTCCGTGTCAAATCGGAAAGATTCCACATGGGCGCATGTGGAGTGTGCACTTTTCAACAGACGAACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGACATAGGGAACGAAATG</pcr_primer_p1>
		<pcr_primer_p2>ACCAGGAAAAGATACCTTTAGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAGACATAGGGAACGAAATGGAAAACGGGCGGAACATTAAAAAACTATGCTTGTTCGGAACCTTTGAAAACAATAAAATGAAAAGGAAAACCAAAATGGCTGGGCGGCAAAGAGTGCTCAAGAGTCATTGTGAGGGGGAGAGCAGGAAGAAAAACAAAAAATGCTCGAAGTAGAGAGAAAGAGGAGGAGAGAAAAAGAGGAAAAAAGTTTTTGGAATATAAAGTCAGTCTAAAGGTATCTTTTCCTGGT</canonical_amplicon>
		<polymorphic_amplicon>AGAGACATAGGGAACGAAATGGAAAACGGGCGGAACATTAAAAAACTATGCTTGTTCGGAACCTTTGAAAACAATAAAATGAAAAGGAAAACCAAAATGGCTGGGCGGCAAAGAGTGCTCAAGAGTCATTGTGAGGGGGAGAGCAGGAAGAAAAACAAAAAATGCTCGAAGTAGAGAGAAAGAGGAGGARAGAAAAAGAGGAAAAAAGTTTTTGGAATATAAAGTCAGTCTAAAGGTATCTTTTCCTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25643</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>221489</contig_pos>
        <strand></strand>
        <context>GGAATATAAA[G/C]TCAGTCTAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GAGAGAAAGAGGAGGAGAGAAAAAGAGGAAAAAAGTTTTTGGAATATAAA</left_flank>
        <right_flank>TCAGTCTAAAGGTATCTTTTCCTGGTATTTATTTACAAGGAAATTTTCAA</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGAAAATGAGGTGAAAGATAAGGCGAGAGGAGTACAATTTCTTCTGATAAAAATATGAAATATGGAGATGGAAATGTTGCAGACGAATGTGTCATGTGTGGGAGAAATCAGCAAAACTTTTTTGTTTCGGATGTGAATAAGCATGGAAATCGATAGAATCCAATGCGTTAGATGCAAAAGGGAGAAGCCAGAAAAAGGCGATGTCCCTTCTTTTCCCGACATGTATCGATCTATTCGTATTCATCACGGATAAACTGAGTGAAGTGCACTTTGAAGAGACATAGGGAACGAAATGGAAAACGGGCGGAACATTAAAAAACTATGCTTGTTCGGAACCTTTGAAAACAATAAAATGAAAAGGAAAACCAAAATGGCTGGGCGGCAAAGAGTGCTCAAGAGTCATTGTGAGGGGGAGAGCAGGAAGAAAAACAAAAAATGCTCGAAGTAGAGAGAAAGAGGAGGAGAGAAAAAGAGGAAAAAAGTTTTTGGAATATAAAGTCAGTCTAAAGGTATCTTTTCCTGGTATTTATTTACAAGGAAATTTTCAAAAACATGTTGTTGATGACCTTGCCATCGAATTAGTCAATTATCGGACAAACATCAGTCTTTGGGTTTTGATCAACATATTTCTATTGTCTTGACTGTCATGAGCTCCTTGTATTGCATGAAATCGTATTTTTAAACATATTTCTAGTATCGAAAAACAGATGTCTGAATCAAATCGGTTTGAAAGACGGCACAGCTGTTGGCTCAAGCACGAGTGCGGAACAAAATAGATGAAGACAAAAACCCAGAAGTAAATATCAAACAAGTCAATTGTGATCTTTGTGCTGACAAGAAATTTAAAATTTCCACTATTAATTCGGGGGGCTTTGTATTTTTTTTTTGAGCTCTCATTCCGTGTCAAATCGGAAAGATTCCACATGGGCGCATGTGGAGTGTGCACTTTTCAACAGACGAACTGTATTTGATCGTCCTATCGGTCCAACCGCTTGCTT</canonical>
            <polymorphic>GGTGAAAATGAGGTGAAAGATAAGGCGAGAGGAGTACAATTTCTTCTGATAAAAATATGAAATATGGAGATGGAAATGTTGCAGACGAATGTGTCATGTGTGGGAGAAATCAGCAAAACTTTTTTGTTTCGGATGTGAATAAGCATGGAAATCGATAGAATCCAATGCGTTAGATGCAAAAGGGAGAAGCCAGAAAAAGGCGATGTCCCTTCTTTTCCCGACATGTATCGATCTATTCGTATTCATCACGGATAAACTGAGTGAAGTGCACTTTGAAGAGACATAGGGAACGAAATGGAAAACGGGCGGAACATTAAAAAACTATGCTTGTTCGGAACCTTTGAAAACAATAAAATGAAAAGGAAAACCAAAATGGCTGGGCGGCAAAGAGTGCTCAAGAGTCATTGTGAGGGGGAGAGCAGGAAGAAAAACAAAAAATGCTCGAAGTAGAGAGAAAGAGGAGGAGAGAAAAAGAGGAAAAAAGTTTTTGGAATATAAASTCAGTCTAAAGGTATCTTTTCCTGGTATTTATTTACAAGGAAATTTTCAAAAACATGTTGTTGATGACCTTGCCATCGAATTAGTCAATTATCGGACAAACATCAGTCTTTGGGTTTTGATCAACATATTTCTATTGTCTTGACTGTCATGAGCTCCTTGTATTGCATGAAATCGTATTTTTAAACATATTTCTAGTATCGAAAAACAGATGTCTGAATCAAATCGGTTTGAAAGACGGCACAGCTGTTGGCTCAAGCACGAGTGCGGAACAAAATAGATGAAGACAAAAACCCAGAAGTAAATATCAAACAAGTCAATTGTGATCTTTGTGCTGACAAGAAATTTAAAATTTCCACTATTAATTCGGGGGGCTTTGTATTTTTTTTTTGAGCTCTCATTCCGTGTCAAATCGGAAAGATTCCACATGGGCGCATGTGGAGTGTGCACTTTTCAACAGACGAACTGTATTTGATCGTCCTATCGGTCCAACCGCTTGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGCTCGAAGTAGAGAGA</pcr_primer_p1>
		<pcr_primer_p2>AATACGATTTCATGCAATACAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGCTCGAAGTAGAGAGAAAGAGGAGGAGAGAAAAAGAGGAAAAAAGTTTTTGGAATATAAAGTCAGTCTAAAGGTATCTTTTCCTGGTATTTATTTACAAGGAAATTTTCAAAAACATGTTGTTGATGACCTTGCCATCGAATTAGTCAATTATCGGACAAACATCAGTCTTTGGGTTTTGATCAACATATTTCTATTGTCTTGACTGTCATGAGCTCCTTGTATTGCATGAAATCGTATT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGCTCGAAGTAGAGAGAAAGAGGAGGAGAGAAAAAGAGGAAAAAAGTTTTTGGAATATAAASTCAGTCTAAAGGTATCTTTTCCTGGTATTTATTTACAAGGAAATTTTCAAAAACATGTTGTTGATGACCTTGCCATCGAATTAGTCAATTATCGGACAAACATCAGTCTTTGGGTTTTGATCAACATATTTCTATTGTCTTGACTGTCATGAGCTCCTTGTATTGCATGAAATCGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25644</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>233373</contig_pos>
        <strand></strand>
        <context>GCTGAGGCGA[A/C]GAGAGAAGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGTGGTTTGGCATAGTGCCAGGCGTGCATTAGAAGAGGCAGCTGAGGCGA</left_flank>
        <right_flank>GAGAGAAGGAGGAGGGCAAGATTATGGGAAAGAGGTGGGTGACGTGGCAG</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGAATGATACTCAACGTTCAATCTATCCATCCCAACTCAATCATTTATTCTCTCTTTGTCCCCATTTCTTAACTGGCATGTGCCCTCAAGTTGAAGCTTAGTTAGATCTCATTACTTCCTCAAACACAGCTTTCTCTTGAACACACTGTCCAAAAGACCAAAAAAATTTCTCGATTCACATAATGTGCCGCTTTCAAATTCTGTTCCATCGCTCTTTTGTAAAACTCCCCCAAAATTTTTTTATCCATTCTGTTGTATTTTTGGTGATTCTGAATCGCAATCCTTCAATAAATGGTATTTCGGCACTGTTAACTGTTCTTTGTTTATAAGACGGCAGCCGCGAATGATGACCATCACGCGATGGAACAGCCGGCTTTGTCAGTTGCCGTGTCTATTTGAATTCTCCGTCTTCGCGCCGTTGCCCGCGTGATCGTTGCGGAGAAAGGGGCGTGGTTTGGCATAGTGCCAGGCGTGCATTAGAAGAGGCAGCTGAGGCGAAGAGAGAAGGAGGAGGGCAAGATTATGGGAAAGAGGTGGGTGACGTGGCAGAAGGAGGTCATTATGCCACTCAATAATGAAGAATAACTGAGAGACCAATAACAACGGGCGGTGCAAGCATGGAGAAAACATATTCGAGTTCAAACAGACAGTTTGAATCAACTATCGATTTTTGGGACTATGCACCGCTGAAGATTTCGAAATTTGAACCAAATTATTCGGGAACTAAATGTCAGAAGAGAACTATTAAAAAAAATCGCCAGAACTCAAAAATTACTGAATTTCAAACTTCCGCTCAAAACGCAAAGTGCGTCAAGGCGCATGACGCCTTTTCGTGATCATAGCACCCTCTCTGGTTTCATATACTCAGCAATTTGTTTCGGAGGNATGGATTTTTGAACTATTAAAAAGTTATAACATTGAACAGGAAACATTTAGAATGTGTCAAAAACCTTTTAAACACTCTAATAGAACGCCACCGGGACCGTCCACTTTGAGCCT</canonical>
            <polymorphic>ACGAATGATACTCAACGTTCAATCTATCCATCCCAACTCAATCATTTATTCTCTCTTTGTCCCCATTTCTTAACTGGCATGTGCCCTCAAGTTGAAGCTTAGTTAGATCTCATTACTTCCTCAAACACAGCTTTCTCTTGAACACACTGTCCAAAAGACCAAAAAAATTTCTCGATTCACATAATGTGCCGCTTTCAAATTCTGTTCCATCGCTCTTTTGTAAAACTCCCCCAAAATTTTTTTATCCATTCTGTTGTATTTTTGGTGATTCTGAATCGCAATCCTTCAATAAATGGTATTTCGGCACTGTTAACTGTTCTTTGTTTATAAGACGGCAGCCGCGAATGATGACCATCACGCGATGGAACAGCCGGCTTTGTCAGTTGCCGTGTCTATTTGAATTCTCCGTCTTCGCGCCGTTGCCCGCGTGATCGTTGCGGAGAAAGGGGCGTGGTTTGGCATAGTGCCAGGCGTGCATTAGAAGAGGCAGCTGAGGCGAMGAGAGAAGGAGGAGGGCAAGATTATGGGAAAGAGGTGGGTGACGTGGCAGAAGGAGGTCATTATGCCACTCAATAATGAAGAATAACTGAGAGACCAATAACAACGGGCGGTGCAAGCATGGAGAAAACATATTCGAGTTCAAACAGACAGTTTGAATCAACTATCGATTTTTGGGACTATGCACCGCTGAAGATTTCGAAATTTGAACCAAATTATTCGGGAACTAAATGTCAGAAGAGAACTATTAAAAAAAATCGCCAGAACTCAAAAATTACTGAATTTCAAACTTCCGCTCAAAACGCAAAGTGCGTCAAGGCGCATGACGCCTTTTCGTGATCATAGCACCCTCTCTGGTTTCATATACTCAGCAATTTGTTTCGGAGGNATGGATTTTTGAACTATTAAAAAGTTATAACATTGAACAGGAAACATTTAGAATGTGTCAAAAACCTTTTAAACACTCTAATAGAACGCCACCGGGACCGTCCACTTTGAGCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATTTGAATTCTCCGTCTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTGAACTCGAATATGTTTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TCTATTTGAATTCTCCGTCTTCGCGCCGTTGCCCGCGTGATCGTTGCGGAGAAAGGGGCGTGGTTTGGCATAGTGCCAGGCGTGCATTAGAAGAGGCAGCTGAGGCGAAGAGAGAAGGAGGAGGGCAAGATTATGGGAAAGAGGTGGGTGACGTGGCAGAAGGAGGTCATTATGCCACTCAATAATGAAGAATAACTGAGAGACCAATAACAACGGGCGGTGCAAGCATGGAGAAAACATATTCGAGTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTATTTGAATTCTCCGTCTTCGCGCCGTTGCCCGCGTGATCGTTGCGGAGAAAGGGGCGTGGTTTGGCATAGTGCCAGGCGTGCATTAGAAGAGGCAGCTGAGGCGAMGAGAGAAGGAGGAGGGCAAGATTATGGGAAAGAGGTGGGTGACGTGGCAGAAGGAGGTCATTATGCCACTCAATAATGAAGAATAACTGAGAGACCAATAACAACGGGCGGTGCAAGCATGGAGAAAACATATTCGAGTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25645</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>233468</contig_pos>
        <strand></strand>
        <context>AACTGAGAGA[C/G]CAATAACAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGGCAGAAGGAGGTCATTATGCCACTCAATAATGAAGAATAACTGAGAGA</left_flank>
        <right_flank>CAATAACAACGGGCGGTGCAAGCATGGAGAAAACATATTCGAGTTCAAAC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTTAGTTAGATCTCATTACTTCCTCAAACACAGCTTTCTCTTGAACACACTGTCCAAAAGACCAAAAAAATTTCTCGATTCACATAATGTGCCGCTTTCAAATTCTGTTCCATCGCTCTTTTGTAAAACTCCCCCAAAATTTTTTTATCCATTCTGTTGTATTTTTGGTGATTCTGAATCGCAATCCTTCAATAAATGGTATTTCGGCACTGTTAACTGTTCTTTGTTTATAAGACGGCAGCCGCGAATGATGACCATCACGCGATGGAACAGCCGGCTTTGTCAGTTGCCGTGTCTATTTGAATTCTCCGTCTTCGCGCCGTTGCCCGCGTGATCGTTGCGGAGAAAGGGGCGTGGTTTGGCATAGTGCCAGGCGTGCATTAGAAGAGGCAGCTGAGGCGAAGAGAGAAGGAGGAGGGCAAGATTATGGGAAAGAGGTGGGTGACGTGGCAGAAGGAGGTCATTATGCCACTCAATAATGAAGAATAACTGAGAGACCAATAACAACGGGCGGTGCAAGCATGGAGAAAACATATTCGAGTTCAAACAGACAGTTTGAATCAACTATCGATTTTTGGGACTATGCACCGCTGAAGATTTCGAAATTTGAACCAAATTATTCGGGAACTAAATGTCAGAAGAGAACTATTAAAAAAAATCGCCAGAACTCAAAAATTACTGAATTTCAAACTTCCGCTCAAAACGCAAAGTGCGTCAAGGCGCATGACGCCTTTTCGTGATCATAGCACCCTCTCTGGTTTCATATACTCAGCAATTTGTTTCGGAGGNATGGATTTTTGAACTATTAAAAAGTTATAACATTGAACAGGAAACATTTAGAATGTGTCAAAAACCTTTTAAACACTCTAATAGAACGCCACCGGGACCGTCCACTTTGAGCCTATATATCTCATTTTCTGTGAGAGATATCAAAAAGTGTTCAACTGATAAAATGATTATCATGATATCAGAAACATTTTATTTGTTTACAACTTTTT</canonical>
            <polymorphic>AGCTTAGTTAGATCTCATTACTTCCTCAAACACAGCTTTCTCTTGAACACACTGTCCAAAAGACCAAAAAAATTTCTCGATTCACATAATGTGCCGCTTTCAAATTCTGTTCCATCGCTCTTTTGTAAAACTCCCCCAAAATTTTTTTATCCATTCTGTTGTATTTTTGGTGATTCTGAATCGCAATCCTTCAATAAATGGTATTTCGGCACTGTTAACTGTTCTTTGTTTATAAGACGGCAGCCGCGAATGATGACCATCACGCGATGGAACAGCCGGCTTTGTCAGTTGCCGTGTCTATTTGAATTCTCCGTCTTCGCGCCGTTGCCCGCGTGATCGTTGCGGAGAAAGGGGCGTGGTTTGGCATAGTGCCAGGCGTGCATTAGAAGAGGCAGCTGAGGCGAAGAGAGAAGGAGGAGGGCAAGATTATGGGAAAGAGGTGGGTGACGTGGCAGAAGGAGGTCATTATGCCACTCAATAATGAAGAATAACTGAGAGASCAATAACAACGGGCGGTGCAAGCATGGAGAAAACATATTCGAGTTCAAACAGACAGTTTGAATCAACTATCGATTTTTGGGACTATGCACCGCTGAAGATTTCGAAATTTGAACCAAATTATTCGGGAACTAAATGTCAGAAGAGAACTATTAAAAAAAATCGCCAGAACTCAAAAATTACTGAATTTCAAACTTCCGCTCAAAACGCAAAGTGCGTCAAGGCGCATGACGCCTTTTCGTGATCATAGCACCCTCTCTGGTTTCATATACTCAGCAATTTGTTTCGGAGGNATGGATTTTTGAACTATTAAAAAGTTATAACATTGAACAGGAAACATTTAGAATGTGTCAAAAACCTTTTAAACACTCTAATAGAACGCCACCGGGACCGTCCACTTTGAGCCTATATATCTCATTTTCTGTGAGAGATATCAAAAAGTGTTCAACTGATAAAATGATTATCATGATATCAGAAACATTTTATTTGTTTACAACTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATTTGAATTCTCCGTCTTC</pcr_primer_p1>
		<pcr_primer_p2>TGTCTGTTTGAACTCGAATATG</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>TCTATTTGAATTCTCCGTCTTCGCGCCGTTGCCCGCGTGATCGTTGCGGAGAAAGGGGCGTGGTTTGGCATAGTGCCAGGCGTGCATTAGAAGAGGCAGCTGAGGCGAAGAGAGAAGGAGGAGGGCAAGATTATGGGAAAGAGGTGGGTGACGTGGCAGAAGGAGGTCATTATGCCACTCAATAATGAAGAATAACTGAGAGACCAATAACAACGGGCGGTGCAAGCATGGAGAAAACATATTCGAGTTCAAACAGACA</canonical_amplicon>
		<polymorphic_amplicon>TCTATTTGAATTCTCCGTCTTCGCGCCGTTGCCCGCGTGATCGTTGCGGAGAAAGGGGCGTGGTTTGGCATAGTGCCAGGCGTGCATTAGAAGAGGCAGCTGAGGCGAAGAGAGAAGGAGGAGGGCAAGATTATGGGAAAGAGGTGGGTGACGTGGCAGAAGGAGGTCATTATGCCACTCAATAATGAAGAATAACTGAGAGASCAATAACAACGGGCGGTGCAAGCATGGAGAAAACATATTCGAGTTCAAACAGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25646</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>233621</contig_pos>
        <strand></strand>
        <context>GAGAACTATT[A/T]AAAAAAATCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGAAATTTGAACCAAATTATTCGGGAACTAAATGTCAGAAGAGAACTATT</left_flank>
        <right_flank>AAAAAAATCGCCAGAACTCAAAAATTACTGAATTTCAAACTTCCGCTCAA</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGTTGTATTTTTGGTGATTCTGAATCGCAATCCTTCAATAAATGGTATTTCGGCACTGTTAACTGTTCTTTGTTTATAAGACGGCAGCCGCGAATGATGACCATCACGCGATGGAACAGCCGGCTTTGTCAGTTGCCGTGTCTATTTGAATTCTCCGTCTTCGCGCCGTTGCCCGCGTGATCGTTGCGGAGAAAGGGGCGTGGTTTGGCATAGTGCCAGGCGTGCATTAGAAGAGGCAGCTGAGGCGAAGAGAGAAGGAGGAGGGCAAGATTATGGGAAAGAGGTGGGTGACGTGGCAGAAGGAGGTCATTATGCCACTCAATAATGAAGAATAACTGAGAGACCAATAACAACGGGCGGTGCAAGCATGGAGAAAACATATTCGAGTTCAAACAGACAGTTTGAATCAACTATCGATTTTTGGGACTATGCACCGCTGAAGATTTCGAAATTTGAACCAAATTATTCGGGAACTAAATGTCAGAAGAGAACTATTAAAAAAAATCGCCAGAACTCAAAAATTACTGAATTTCAAACTTCCGCTCAAAACGCAAAGTGCGTCAAGGCGCATGACGCCTTTTCGTGATCATAGCACCCTCTCTGGTTTCATATACTCAGCAATTTGTTTCGGAGGNATGGATTTTTGAACTATTAAAAAGTTATAACATTGAACAGGAAACATTTAGAATGTGTCAAAAACCTTTTAAACACTCTAATAGAACGCCACCGGGACCGTCCACTTTGAGCCTATATATCTCATTTTCTGTGAGAGATATCAAAAAGTGTTCAACTGATAAAATGATTATCATGATATCAGAAACATTTTATTTGTTTACAACTTTTTGATATCTCTCACAGAAAACGTGATACATGGGCTCAAATTTGACGATGATTCGGGTGGCGTTCTAATAGAGTGTTTACGGTAATTTCAAAAGTTTATTTTTTTATATTAAAAAAATTCTGACTCAGAATTTTCAGAAATTTTCAGTTTTTTCCC</canonical>
            <polymorphic>TTCTGTTGTATTTTTGGTGATTCTGAATCGCAATCCTTCAATAAATGGTATTTCGGCACTGTTAACTGTTCTTTGTTTATAAGACGGCAGCCGCGAATGATGACCATCACGCGATGGAACAGCCGGCTTTGTCAGTTGCCGTGTCTATTTGAATTCTCCGTCTTCGCGCCGTTGCCCGCGTGATCGTTGCGGAGAAAGGGGCGTGGTTTGGCATAGTGCCAGGCGTGCATTAGAAGAGGCAGCTGAGGCGAAGAGAGAAGGAGGAGGGCAAGATTATGGGAAAGAGGTGGGTGACGTGGCAGAAGGAGGTCATTATGCCACTCAATAATGAAGAATAACTGAGAGACCAATAACAACGGGCGGTGCAAGCATGGAGAAAACATATTCGAGTTCAAACAGACAGTTTGAATCAACTATCGATTTTTGGGACTATGCACCGCTGAAGATTTCGAAATTTGAACCAAATTATTCGGGAACTAAATGTCAGAAGAGAACTATTWAAAAAAATCGCCAGAACTCAAAAATTACTGAATTTCAAACTTCCGCTCAAAACGCAAAGTGCGTCAAGGCGCATGACGCCTTTTCGTGATCATAGCACCCTCTCTGGTTTCATATACTCAGCAATTTGTTTCGGAGGNATGGATTTTTGAACTATTAAAAAGTTATAACATTGAACAGGAAACATTTAGAATGTGTCAAAAACCTTTTAAACACTCTAATAGAACGCCACCGGGACCGTCCACTTTGAGCCTATATATCTCATTTTCTGTGAGAGATATCAAAAAGTGTTCAACTGATAAAATGATTATCATGATATCAGAAACATTTTATTTGTTTACAACTTTTTGATATCTCTCACAGAAAACGTGATACATGGGCTCAAATTTGACGATGATTCGGGTGGCGTTCTAATAGAGTGTTTACGGTAATTTCAAAAGTTTATTTTTTTATATTAAAAAAATTCTGACTCAGAATTTTCAGAAATTTTCAGTTTTTTCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>436 246 157 62 52 47</canonical_bands>
                <polymorphic_bands>593 246 62 52 47</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACATATTCGAGTTCAAACAG</pcr_primer_p1>
		<pcr_primer_p2>GCTGAGTATATGAAACCAGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAACATATTCGAGTTCAAACAGACAGTTTGAATCAACTATCGATTTTTGGGACTATGCACCGCTGAAGATTTCGAAATTTGAACCAAATTATTCGGGAACTAAATGTCAGAAGAGAACTATTAAAAAAAATCGCCAGAACTCAAAAATTACTGAATTTCAAACTTCCGCTCAAAACGCAAAGTGCGTCAAGGCGCATGACGCCTTTTCGTGATCATAGCACCCTCTCTGGTTTCATATACTCAGC</canonical_amplicon>
		<polymorphic_amplicon>AAAACATATTCGAGTTCAAACAGACAGTTTGAATCAACTATCGATTTTTGGGACTATGCACCGCTGAAGATTTCGAAATTTGAACCAAATTATTCGGGAACTAAATGTCAGAAGAGAACTATTWAAAAAAATCGCCAGAACTCAAAAATTACTGAATTTCAAACTTCCGCTCAAAACGCAAAGTGCGTCAAGGCGCATGACGCCTTTTCGTGATCATAGCACCCTCTCTGGTTTCATATACTCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25647</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>251248</contig_pos>
        <strand></strand>
        <context>tctggacctc[A/G]tctgtyaagt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACAAAAATTGTAATTTTTGTTGATTTTGACCATTTTCAGTCTGGACCTC</left_flank>
        <right_flank>TCTGTTAAGTTTCCAAGAACTTTGAAAACCCCTGGAGGATGTACAACAGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTCCCCAAAGGTATCCTTCCGTACAATGATGACAATTCATACTCCAATAGTCATCATCTCTTCGTTTCGACCACTCAGCCAGCCAGCCAACCGAAATGATCATTTGAGATGAAGAGACGGAGACGAGAGAAACTAAAGTATAAAATGAACGTGCCTCTAGCCATTATTTGTGGTCTTGTTGCAATTATTGTTTTTTTTTCGGTCAATATAAATAGACTCTCTTTTTCTCTATAGCATACCATTCCTTTTCAGAATATGCCTTCCTACAAACTCACCTACTTCGATGTTCGTGGCCTCGCCGAACCATCTCGTCTTCTTTTCCATCTTGCTGGAGTTCCATTCGAGGATAACCGCATTGTTTTTGGAGATGGAACCTGGGAGAGGATGAAAAATTGTGAGTCCATCAACTAGGAAAAATTGGAATATACAATACTGATCAATAAGATATACAAAAATTGTAATTTTTGTTGATTTTGACCATTTTCAGTCTGGACCTCATCTGTTAAGTTTCCAAGAACTTTGAAAACCCCTGGAGGATGTACAACAGAACTAGATTCACAACTTCAGTTTTCGCAGAATTTAAAAAAAAAATCCTTTTATTTTCGATTTCTAAAAGACACTCATATTTTGCTGGTTTTTGTACTGAAACTGTGAAAAAAGAGTCTCTCAGAAATCGGCGAATAGCTGAAAAACGGGAATTTTTTTTTAAAGTTCTGTGAATGCAAAATTTTCAATCTAGGTCTATTTCACACCCTCTAACATTTTCAAGGTGATAGGACACTTGATAGTCGAGCTCTAGACTCCTGAAAATTGTCAAAATCAACTGAAAAACACGTTTTGTTGACCGGTACTGAATTTGTTTCTTTCAGCCACCCCATTTGGTCAAATGCCAGTTTTGAACGTAGATGGATTTGAAATCCCTCAATCCATGGCCATCGCTCGTTTCCTTGCCAAAAAGTTTGGATTCGCTGGAAAGACCCCAGAGGAACAGGCCTGGG</canonical>
            <polymorphic>CCTTCCCCAAAGGTATCCTTCCGTACAATGATGACAATTCATACTCCAATAGTCATCATCTCTTCGTTTCGACCACTCAGCCAGCCAGCCAACCGAAATGATCATTTGAGATGAAGAGACGGAGACGAGAGAAACTAAAGTATAAAATGAACGTGCCTCTAGCCATTATTTGTGGTCTTGTTGCAATTATTGTTTTTTTTTCGGTCAATATAAATAGACTCTCTTTTTCTCTATAGCATACCATTCCTTTTCAGAATATGCCTTCCTACAAACTCACCTACTTCGATGTTCGTGGCCTCGCCGAACCATCTCGTCTTCTTTTCCATCTTGCTGGAGTTCCATTCGAGGATAACCGCATTGTTTTTGGAGATGGAACCTGGGAGAGGATGAAAAATTGTGAGTCCATCAACTAGGAAAAATTGGAATATACAATACTGATCAATAAGATATACAAAAATTGTAATTTTTGTTGATTTTGACCATTTTCAGTCTGGACCTCRTCTGTTAAGTTTCCAAGAACTTTGAAAACCCCTGGAGGATGTACAACAGAACTAGATTCACAACTTCAGTTTTCGCAGAATTTAAAAAAAAAATCCTTTTATTTTCGATTTCTAAAAGACACTCATATTTTGCTGGTTTTTGTACTGAAACTGTGAAAAAAGAGTCTCTCAGAAATCGGCGAATAGCTGAAAAACGGGAATTTTTTTTTAAAGTTCTGTGAATGCAAAATTTTCAATCTAGGTCTATTTCACACCCTCTAACATTTTCAAGGTGATAGGACACTTGATAGTCGAGCTCTAGACTCCTGAAAATTGTCAAAATCAACTGAAAAACACGTTTTGTTGACCGGTACTGAATTTGTTTCTTTCAGCCACCCCATTTGGTCAAATGCCAGTTTTGAACGTAGATGGATTTGAAATCCCTCAATCCATGGCCATCGCTCGTTTCCTTGCCAAAAAGTTTGGATTCGCTGGAAAGACCCCAGAGGAACAGGCCTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCCATCAACTAGGAAAAATTG</pcr_primer_p1>
		<pcr_primer_p2>GTTCAAAACTGGCATTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>503</pcr_amplicon_size>
		<canonical_amplicon>GTCCATCAACTAGGAAAAATTGGAATATACAATACTGATCAATAAGATATACAAAAATTGTAATTTTTGTTGATTTTGACCATTTTCAGTCTGGACCTCATCTGTTAAGTTTCCAAGAACTTTGAAAACCCCTGGAGGATGTACAACAGAACTAGATTCACAACTTCAGTTTTCGCAGAATTTAAAAAAAAAATCCTTTTATTTTCGATTTCTAAAAGACACTCATATTTTGCTGGTTTTTGTACTGAAACTGTGAAAAAAGAGTCTCTCAGAAATCGGCGAATAGCTGAAAAACGGGAATTTTTTTTTAAAGTTCTGTGAATGCAAAATTTTCAATCTAGGTCTATTTCACACCCTCTAACATTTTCAAGGTGATAGGACACTTGATAGTCGAGCTCTAGACTCCTGAAAATTGTCAAAATCAACTGAAAAACACGTTTTGTTGACCGGTACTGAATTTGTTTCTTTCAGCCACCCCATTTGGTCAAATGCCAGTTTTGAAC</canonical_amplicon>
		<polymorphic_amplicon>GTCCATCAACTAGGAAAAATTGGAATATACAATACTGATCAATAAGATATACAAAAATTGTAATTTTTGTTGATTTTGACCATTTTCAGTCTGGACCTCRTCTGTTAAGTTTCCAAGAACTTTGAAAACCCCTGGAGGATGTACAACAGAACTAGATTCACAACTTCAGTTTTCGCAGAATTTAAAAAAAAAATCCTTTTATTTTCGATTTCTAAAAGACACTCATATTTTGCTGGTTTTTGTACTGAAACTGTGAAAAAAGAGTCTCTCAGAAATCGGCGAATAGCTGAAAAACGGGAATTTTTTTTTAAAGTTCTGTGAATGCAAAATTTTCAATCTAGGTCTATTTCACACCCTCTAACATTTTCAAGGTGATAGGACACTTGATAGTCGAGCTCTAGACTCCTGAAAATTGTCAAAATCAACTGAAAAACACGTTTTGTTGACCGGTACTGAATTTGTTTCTTTCAGCCACCCCATTTGGTCAAATGCCAGTTTTGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25648</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>251254</contig_pos>
        <strand></strand>
        <context>cctcrtctgt[T/C]aagtttccaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATTGTAATTTTTGTTGATTTTGACCATTTTCAGTCTGGACCTCATCTGT</left_flank>
        <right_flank>AAGTTTCCAAGAACTTTGAAAACCCCTGGAGGATGTACAACAGAACTAGA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAAGGTATCCTTCCGTACAATGATGACAATTCATACTCCAATAGTCATCATCTCTTCGTTTCGACCACTCAGCCAGCCAGCCAACCGAAATGATCATTTGAGATGAAGAGACGGAGACGAGAGAAACTAAAGTATAAAATGAACGTGCCTCTAGCCATTATTTGTGGTCTTGTTGCAATTATTGTTTTTTTTTCGGTCAATATAAATAGACTCTCTTTTTCTCTATAGCATACCATTCCTTTTCAGAATATGCCTTCCTACAAACTCACCTACTTCGATGTTCGTGGCCTCGCCGAACCATCTCGTCTTCTTTTCCATCTTGCTGGAGTTCCATTCGAGGATAACCGCATTGTTTTTGGAGATGGAACCTGGGAGAGGATGAAAAATTGTGAGTCCATCAACTAGGAAAAATTGGAATATACAATACTGATCAATAAGATATACAAAAATTGTAATTTTTGTTGATTTTGACCATTTTCAGTCTGGACCTCATCTGTTAAGTTTCCAAGAACTTTGAAAACCCCTGGAGGATGTACAACAGAACTAGATTCACAACTTCAGTTTTCGCAGAATTTAAAAAAAAAATCCTTTTATTTTCGATTTCTAAAAGACACTCATATTTTGCTGGTTTTTGTACTGAAACTGTGAAAAAAGAGTCTCTCAGAAATCGGCGAATAGCTGAAAAACGGGAATTTTTTTTTAAAGTTCTGTGAATGCAAAATTTTCAATCTAGGTCTATTTCACACCCTCTAACATTTTCAAGGTGATAGGACACTTGATAGTCGAGCTCTAGACTCCTGAAAATTGTCAAAATCAACTGAAAAACACGTTTTGTTGACCGGTACTGAATTTGTTTCTTTCAGCCACCCCATTTGGTCAAATGCCAGTTTTGAACGTAGATGGATTTGAAATCCCTCAATCCATGGCCATCGCTCGTTTCCTTGCCAAAAAGTTTGGATTCGCTGGAAAGACCCCAGAGGAACAGGCCTGGGTTGACG</canonical>
            <polymorphic>CCAAAGGTATCCTTCCGTACAATGATGACAATTCATACTCCAATAGTCATCATCTCTTCGTTTCGACCACTCAGCCAGCCAGCCAACCGAAATGATCATTTGAGATGAAGAGACGGAGACGAGAGAAACTAAAGTATAAAATGAACGTGCCTCTAGCCATTATTTGTGGTCTTGTTGCAATTATTGTTTTTTTTTCGGTCAATATAAATAGACTCTCTTTTTCTCTATAGCATACCATTCCTTTTCAGAATATGCCTTCCTACAAACTCACCTACTTCGATGTTCGTGGCCTCGCCGAACCATCTCGTCTTCTTTTCCATCTTGCTGGAGTTCCATTCGAGGATAACCGCATTGTTTTTGGAGATGGAACCTGGGAGAGGATGAAAAATTGTGAGTCCATCAACTAGGAAAAATTGGAATATACAATACTGATCAATAAGATATACAAAAATTGTAATTTTTGTTGATTTTGACCATTTTCAGTCTGGACCTCATCTGTYAAGTTTCCAAGAACTTTGAAAACCCCTGGAGGATGTACAACAGAACTAGATTCACAACTTCAGTTTTCGCAGAATTTAAAAAAAAAATCCTTTTATTTTCGATTTCTAAAAGACACTCATATTTTGCTGGTTTTTGTACTGAAACTGTGAAAAAAGAGTCTCTCAGAAATCGGCGAATAGCTGAAAAACGGGAATTTTTTTTTAAAGTTCTGTGAATGCAAAATTTTCAATCTAGGTCTATTTCACACCCTCTAACATTTTCAAGGTGATAGGACACTTGATAGTCGAGCTCTAGACTCCTGAAAATTGTCAAAATCAACTGAAAAACACGTTTTGTTGACCGGTACTGAATTTGTTTCTTTCAGCCACCCCATTTGGTCAAATGCCAGTTTTGAACGTAGATGGATTTGAAATCCCTCAATCCATGGCCATCGCTCGTTTCCTTGCCAAAAAGTTTGGATTCGCTGGAAAGACCCCAGAGGAACAGGCCTGGGTTGACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>499 298 126 77</canonical_bands>
                <polymorphic_bands>576 298 126</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCCATCAACTAGGAAAAATTG</pcr_primer_p1>
		<pcr_primer_p2>GTTCAAAACTGGCATTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>503</pcr_amplicon_size>
		<canonical_amplicon>GTCCATCAACTAGGAAAAATTGGAATATACAATACTGATCAATAAGATATACAAAAATTGTAATTTTTGTTGATTTTGACCATTTTCAGTCTGGACCTCATCTGTTAAGTTTCCAAGAACTTTGAAAACCCCTGGAGGATGTACAACAGAACTAGATTCACAACTTCAGTTTTCGCAGAATTTAAAAAAAAAATCCTTTTATTTTCGATTTCTAAAAGACACTCATATTTTGCTGGTTTTTGTACTGAAACTGTGAAAAAAGAGTCTCTCAGAAATCGGCGAATAGCTGAAAAACGGGAATTTTTTTTTAAAGTTCTGTGAATGCAAAATTTTCAATCTAGGTCTATTTCACACCCTCTAACATTTTCAAGGTGATAGGACACTTGATAGTCGAGCTCTAGACTCCTGAAAATTGTCAAAATCAACTGAAAAACACGTTTTGTTGACCGGTACTGAATTTGTTTCTTTCAGCCACCCCATTTGGTCAAATGCCAGTTTTGAAC</canonical_amplicon>
		<polymorphic_amplicon>GTCCATCAACTAGGAAAAATTGGAATATACAATACTGATCAATAAGATATACAAAAATTGTAATTTTTGTTGATTTTGACCATTTTCAGTCTGGACCTCATCTGTYAAGTTTCCAAGAACTTTGAAAACCCCTGGAGGATGTACAACAGAACTAGATTCACAACTTCAGTTTTCGCAGAATTTAAAAAAAAAATCCTTTTATTTTCGATTTCTAAAAGACACTCATATTTTGCTGGTTTTTGTACTGAAACTGTGAAAAAAGAGTCTCTCAGAAATCGGCGAATAGCTGAAAAACGGGAATTTTTTTTTAAAGTTCTGTGAATGCAAAATTTTCAATCTAGGTCTATTTCACACCCTCTAACATTTTCAAGGTGATAGGACACTTGATAGTCGAGCTCTAGACTCCTGAAAATTGTCAAAATCAACTGAAAAACACGTTTTGTTGACCGGTACTGAATTTGTTTCTTTCAGCCACCCCATTTGGTCAAATGCCAGTTTTGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25649</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>251277</contig_pos>
        <strand></strand>
        <context>actttgaaaa[C/T]ccctggagga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCATTTTCAGTCTGGACCTCATCTGTTAAGTTTCCAAGAACTTTGAAAA</left_flank>
        <right_flank>CCCTGGAGGATGTACAACAGAACTAGATTCACAACTTCAGTTTTCGCAGA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGACAATTCATACTCCAATAGTCATCATCTCTTCGTTTCGACCACTCAGCCAGCCAGCCAACCGAAATGATCATTTGAGATGAAGAGACGGAGACGAGAGAAACTAAAGTATAAAATGAACGTGCCTCTAGCCATTATTTGTGGTCTTGTTGCAATTATTGTTTTTTTTTCGGTCAATATAAATAGACTCTCTTTTTCTCTATAGCATACCATTCCTTTTCAGAATATGCCTTCCTACAAACTCACCTACTTCGATGTTCGTGGCCTCGCCGAACCATCTCGTCTTCTTTTCCATCTTGCTGGAGTTCCATTCGAGGATAACCGCATTGTTTTTGGAGATGGAACCTGGGAGAGGATGAAAAATTGTGAGTCCATCAACTAGGAAAAATTGGAATATACAATACTGATCAATAAGATATACAAAAATTGTAATTTTTGTTGATTTTGACCATTTTCAGTCTGGACCTCATCTGTTAAGTTTCCAAGAACTTTGAAAACCCCTGGAGGATGTACAACAGAACTAGATTCACAACTTCAGTTTTCGCAGAATTTAAAAAAAAAATCCTTTTATTTTCGATTTCTAAAAGACACTCATATTTTGCTGGTTTTTGTACTGAAACTGTGAAAAAAGAGTCTCTCAGAAATCGGCGAATAGCTGAAAAACGGGAATTTTTTTTTAAAGTTCTGTGAATGCAAAATTTTCAATCTAGGTCTATTTCACACCCTCTAACATTTTCAAGGTGATAGGACACTTGATAGTCGAGCTCTAGACTCCTGAAAATTGTCAAAATCAACTGAAAAACACGTTTTGTTGACCGGTACTGAATTTGTTTCTTTCAGCCACCCCATTTGGTCAAATGCCAGTTTTGAACGTAGATGGATTTGAAATCCCTCAATCCATGGCCATCGCTCGTTTCCTTGCCAAAAAGTTTGGATTCGCTGGAAAGACCCCAGAGGAACAGGCCTGGGTTGACGCAATCGTCGATCAATTCAAAGAC</canonical>
            <polymorphic>GATGACAATTCATACTCCAATAGTCATCATCTCTTCGTTTCGACCACTCAGCCAGCCAGCCAACCGAAATGATCATTTGAGATGAAGAGACGGAGACGAGAGAAACTAAAGTATAAAATGAACGTGCCTCTAGCCATTATTTGTGGTCTTGTTGCAATTATTGTTTTTTTTTCGGTCAATATAAATAGACTCTCTTTTTCTCTATAGCATACCATTCCTTTTCAGAATATGCCTTCCTACAAACTCACCTACTTCGATGTTCGTGGCCTCGCCGAACCATCTCGTCTTCTTTTCCATCTTGCTGGAGTTCCATTCGAGGATAACCGCATTGTTTTTGGAGATGGAACCTGGGAGAGGATGAAAAATTGTGAGTCCATCAACTAGGAAAAATTGGAATATACAATACTGATCAATAAGATATACAAAAATTGTAATTTTTGTTGATTTTGACCATTTTCAGTCTGGACCTCATCTGTTAAGTTTCCAAGAACTTTGAAAAYCCCTGGAGGATGTACAACAGAACTAGATTCACAACTTCAGTTTTCGCAGAATTTAAAAAAAAAATCCTTTTATTTTCGATTTCTAAAAGACACTCATATTTTGCTGGTTTTTGTACTGAAACTGTGAAAAAAGAGTCTCTCAGAAATCGGCGAATAGCTGAAAAACGGGAATTTTTTTTTAAAGTTCTGTGAATGCAAAATTTTCAATCTAGGTCTATTTCACACCCTCTAACATTTTCAAGGTGATAGGACACTTGATAGTCGAGCTCTAGACTCCTGAAAATTGTCAAAATCAACTGAAAAACACGTTTTGTTGACCGGTACTGAATTTGTTTCTTTCAGCCACCCCATTTGGTCAAATGCCAGTTTTGAACGTAGATGGATTTGAAATCCCTCAATCCATGGCCATCGCTCGTTTCCTTGCCAAAAAGTTTGGATTCGCTGGAAAGACCCCAGAGGAACAGGCCTGGGTTGACGCAATCGTCGATCAATTCAAAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCCATCAACTAGGAAAAATTG</pcr_primer_p1>
		<pcr_primer_p2>GTTCAAAACTGGCATTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>503</pcr_amplicon_size>
		<canonical_amplicon>GTCCATCAACTAGGAAAAATTGGAATATACAATACTGATCAATAAGATATACAAAAATTGTAATTTTTGTTGATTTTGACCATTTTCAGTCTGGACCTCATCTGTTAAGTTTCCAAGAACTTTGAAAACCCCTGGAGGATGTACAACAGAACTAGATTCACAACTTCAGTTTTCGCAGAATTTAAAAAAAAAATCCTTTTATTTTCGATTTCTAAAAGACACTCATATTTTGCTGGTTTTTGTACTGAAACTGTGAAAAAAGAGTCTCTCAGAAATCGGCGAATAGCTGAAAAACGGGAATTTTTTTTTAAAGTTCTGTGAATGCAAAATTTTCAATCTAGGTCTATTTCACACCCTCTAACATTTTCAAGGTGATAGGACACTTGATAGTCGAGCTCTAGACTCCTGAAAATTGTCAAAATCAACTGAAAAACACGTTTTGTTGACCGGTACTGAATTTGTTTCTTTCAGCCACCCCATTTGGTCAAATGCCAGTTTTGAAC</canonical_amplicon>
		<polymorphic_amplicon>GTCCATCAACTAGGAAAAATTGGAATATACAATACTGATCAATAAGATATACAAAAATTGTAATTTTTGTTGATTTTGACCATTTTCAGTCTGGACCTCATCTGTTAAGTTTCCAAGAACTTTGAAAAYCCCTGGAGGATGTACAACAGAACTAGATTCACAACTTCAGTTTTCGCAGAATTTAAAAAAAAAATCCTTTTATTTTCGATTTCTAAAAGACACTCATATTTTGCTGGTTTTTGTACTGAAACTGTGAAAAAAGAGTCTCTCAGAAATCGGCGAATAGCTGAAAAACGGGAATTTTTTTTTAAAGTTCTGTGAATGCAAAATTTTCAATCTAGGTCTATTTCACACCCTCTAACATTTTCAAGGTGATAGGACACTTGATAGTCGAGCTCTAGACTCCTGAAAATTGTCAAAATCAACTGAAAAACACGTTTTGTTGACCGGTACTGAATTTGTTTCTTTCAGCCACCCCATTTGGTCAAATGCCAGTTTTGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25650</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>259358</contig_pos>
        <strand>+</strand>
        <context>TATTGCAAAT[G/T]ATTGTTTCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATCAAGCATTGATATACAATCAGACTACGAATTCGTTCGTATTGCAAAT</left_flank>
        <right_flank>ATTGTTTCACAATCCACCCGAGAGTTGGCGGAGTTTATTCATGGACCTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGACTTTTTTCTTTCATTTTATTTCGAATTAATGCTGGAAATTTTATTTTTCAACCGATTTTGTGTTTGCAATTCGAGTGAAATATACGGTTGTTCCGCAAAGCGTCGTAATTAATAGCGCATGCAAACTTTCTCCCGCTTTCGTTTCTCCCGCTTTCGTTTCTCCCCATTTCGTTTCTCTCGCCGCCGCGTTTCTCGCGCTTTCGTACGGTCTCGGTTTAGCGTTCTTGCCGATTCGTTTCTTGCCGTTTCTTGCGCTTTCGTTTCTTGCGGATTTCAATCCTTGCCGATTTGTCTAGATTCTTTGGCTTCTATTCAAATCCATTATTATGAATGAAAACTGTCTGAAAACATTGTTTTCTTATGTTGCAAACGAACAACGGTTGGTTCTCATGCTTTGAAAACTTTCGAACATTTAGAAGCTTCAGAGACATTCAGGATATCGAAGTATCAAGCATTGATATACAATCAGACTACGAATTCGTTCGTATTGCAAATTATTGTTTCACAATCCACCCGAGAGTTGGCGGAGTTTATTCATGGACCTTTCTAGAAAATTCTGTACTGAAATTGAGCAGTGGAGACAAAACTGATAATTTTACTGCTACAGTTTCTTCAACAAAGCATGATATTTATAGAAAAATAGTTCAGATGTTTTTGAACCGTCCAGGGACCACCATTCATCGTTTGGAACTTTTGGTCTGTATATTTAAATTACAAATGTTTGCATGATTGGAGTTCAGGATTATCCGGATGGTCTAGAACAGTGTAAACCTTTGAGAGTTCATCATTTGAAATGGGTTATGTCAATTTGTTCTGAAAGATTCGATTATACAACTTTCTTCCATTGTTTGAGATCGTTTCCAATTGACACTGTAGAAGTTAAATGGGATGGAGCAGAAAATATGATTTTTTCAGAAGATGTGGTAAGTTTCGAATGAGATTGATATATTAAATAGAGAATAAACGATTTCCAGATTACCTCAGCTAGAAATTTGA</canonical>
            <polymorphic>TTGACTTTTTTCTTTCATTTTATTTCGAATTAATGCTGGAAATTTTATTTTTCAACCGATTTTGTGTTTGCAATTCGAGTGAAATATACGGTTGTTCCGCAAAGCGTCGTAATTAATAGCGCATGCAAACTTTCTCCCGCTTTCGTTTCTCCCGCTTTCGTTTCTCCCCATTTCGTTTCTCTCGCCGCCGCGTTTCTCGCGCTTTCGTACGGTCTCGGTTTAGCGTTCTTGCCGATTCGTTTCTTGCCGTTTCTTGCGCTTTCGTTTCTTGCGGATTTCAATCCTTGCCGATTTGTCTAGATTCTTTGGCTTCTATTCAAATCCATTATTATGAATGAAAACTGTCTGAAAACATTGTTTTCTTATGTTGCAAACGAACAACGGTTGGTTCTCATGCTTTGAAAACTTTCGAACATTTAGAAGCTTCAGAGACATTCAGGATATCGAAGTATCAAGCATTGATATACAATCAGACTACGAATTCGTTCGTATTGCAAATKATTGTTTCACAATCCACCCGAGAGTTGGCGGAGTTTATTCATGGACCTTTCTAGAAAATTCTGTACTGAAATTGAGCAGTGGAGACAAAACTGATAATTTTACTGCTACAGTTTCTTCAACAAAGCATGATATTTATAGAAAAATAGTTCAGATGTTTTTGAACCGTCCAGGGACCACCATTCATCGTTTGGAACTTTTGGTCTGTATATTTAAATTACAAATGTTTGCATGATTGGAGTTCAGGATTATCCGGATGGTCTAGAACAGTGTAAACCTTTGAGAGTTCATCATTTGAAATGGGTTATGTCAATTTGTTCTGAAAGATTCGATTATACAACTTTCTTCCATTGTTTGAGATCGTTTCCAATTGACACTGTAGAAGTTAAATGGGATGGAGCAGAAAATATGATTTTTTCAGAAGATGTGGTAAGTTTCGAATGAGATTGATATATTAAATAGAGAATAAACGATTTCCAGATTACCTCAGCTAGAAATTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>369 127 118 96 60 57 39 31 27 26 17 13 13 7</canonical_bands>
                <polymorphic_bands>369 127 118 96 77 57 39 31 27 26 13 13 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGAAGCTTCAGAGACATTCAG</pcr_primer_p1>
		<pcr_primer_p2>GGTTCAAAAACATCTGAACTATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTAGAAGCTTCAGAGACATTCAGGATATCGAAGTATCAAGCATTGATATACAATCAGACTACGAATTCGTTCGTATTGCAAATTATTGTTTCACAATCCACCCGAGAGTTGGCGGAGTTTATTCATGGACCTTTCTAGAAAATTCTGTACTGAAATTGAGCAGTGGAGACAAAACTGATAATTTTACTGCTACAGTTTCTTCAACAAAGCATGATATTTATAGAAAAATAGTTCAGATGTTTTTGAACC</canonical_amplicon>
		<polymorphic_amplicon>TTAGAAGCTTCAGAGACATTCAGGATATCGAAGTATCAAGCATTGATATACAATCAGACTACGAATTCGTTCGTATTGCAAATKATTGTTTCACAATCCACCCGAGAGTTGGCGGAGTTTATTCATGGACCTTTCTAGAAAATTCTGTACTGAAATTGAGCAGTGGAGACAAAACTGATAATTTTACTGCTACAGTTTCTTCAACAAAGCATGATATTTATAGAAAAATAGTTCAGATGTTTTTGAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25651</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>261095</contig_pos>
        <strand>+</strand>
        <context>TTGCCAGTAA[C/T]ATCATTGTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCACGAGAATTCAAATATGGATTGTTTGAACCGATATGGTTGCCAGTAA</left_flank>
        <right_flank>ATCATTGTTACATGTTCCTAAATTGGATTTGAAAAAAGTTTTAACGGTGA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGAATGGGACACATCCTATGGTCCATAACCTTGTCCACTCTTTTTTCATCGACCTACGGGAATCGATAATCTGCAATCGAAAACTAAATTTTCATTTTAATTGGCAGATGACACAAAAAAAGTTGTTTTGCCATTATAATTGCCATAATCTATAGAGCCCTGTTTGCTTTATTTTTGTAGATCGCAACCCGGCCTGTAACCTATAGCTTTGATTGTTCATGAACATATCATTTTCAGGATGCCCATCAATCTTCTAAAACTGCCTCGTTTAGTGGGCGTCCTGGTTGTGTCTGAATTATTGGATTACCAGGAAATATTTCTACTAAGTATATGCTCCCGTCACACCAAAGTTTTAGTGGAAAACGCTAGAATTAGGGTTCCAAAGTTGACGTTTCGCTTTGGGGAATGACATGGATATAACGAATTCAAGATTGGATTTGAAATTGACCCACGAGAATTCAAATATGGATTGTTTGAACCGATATGGTTGCCAGTAATATCATTGTTACATGTTCCTAAATTGGATTTGAAAAAAGTTTTAACGGTGAAGCTTGGAATTGTTTACAAAGCAGCTACAAAGTGAGTTCTATGCTTTTAGTTCTAGCATTTTAAGAAGAGTAAAGATTAACAAATTTATACAACCTTAAAAGCTGTAATGTAGCTTCGAAACCAGAAGATGATGTACCTCGCATTGTTATTTCATACAGTAACCCAGAATTACAATGTTGCAGTGTCCATTTATGGTGCGAGGAAGATGGAAGATTCGTACACCGAATAGAATTTGCAAATGATCCAATGGAAATTCAGATGGTTCTTCAAGACCATATCAATTCAATATTTCACATGAACTAGCCAATTGTTCCTATCAATGAAATGTGAAGGAGTCTGCCAAACATCACAAACGTCGCACATATTAAGATAGAAGACGGCACTGTAGATCCACAATTATTAACAAACGTTTTGACGACTTATTCTGATCATCGGAGCCTCTCAATCGA</canonical>
            <polymorphic>TCAGAATGGGACACATCCTATGGTCCATAACCTTGTCCACTCTTTTTTCATCGACCTACGGGAATCGATAATCTGCAATCGAAAACTAAATTTTCATTTTAATTGGCAGATGACACAAAAAAAGTTGTTTTGCCATTATAATTGCCATAATCTATAGAGCCCTGTTTGCTTTATTTTTGTAGATCGCAACCCGGCCTGTAACCTATAGCTTTGATTGTTCATGAACATATCATTTTCAGGATGCCCATCAATCTTCTAAAACTGCCTCGTTTAGTGGGCGTCCTGGTTGTGTCTGAATTATTGGATTACCAGGAAATATTTCTACTAAGTATATGCTCCCGTCACACCAAAGTTTTAGTGGAAAACGCTAGAATTAGGGTTCCAAAGTTGACGTTTCGCTTTGGGGAATGACATGGATATAACGAATTCAAGATTGGATTTGAAATTGACCCACGAGAATTCAAATATGGATTGTTTGAACCGATATGGTTGCCAGTAAYATCATTGTTACATGTTCCTAAATTGGATTTGAAAAAAGTTTTAACGGTGAAGCTTGGAATTGTTTACAAAGCAGCTACAAAGTGAGTTCTATGCTTTTAGTTCTAGCATTTTAAGAAGAGTAAAGATTAACAAATTTATACAACCTTAAAAGCTGTAATGTAGCTTCGAAACCAGAAGATGATGTACCTCGCATTGTTATTTCATACAGTAACCCAGAATTACAATGTTGCAGTGTCCATTTATGGTGCGAGGAAGATGGAAGATTCGTACACCGAATAGAATTTGCAAATGATCCAATGGAAATTCAGATGGTTCTTCAAGACCATATCAATTCAATATTTCACATGAACTAGCCAATTGTTCCTATCAATGAAATGTGAAGGAGTCTGCCAAACATCACAAACGTCGCACATATTAAGATAGAAGACGGCACTGTAGATCCACAATTATTAACAAACGTTTTGACGACTTATTCTGATCATCGGAGCCTCTCAATCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAGTGGAAAACGCTAGAATTA</pcr_primer_p1>
		<pcr_primer_p2>AAGCATAGAACTCACTTTGTAGC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTAGTGGAAAACGCTAGAATTAGGGTTCCAAAGTTGACGTTTCGCTTTGGGGAATGACATGGATATAACGAATTCAAGATTGGATTTGAAATTGACCCACGAGAATTCAAATATGGATTGTTTGAACCGATATGGTTGCCAGTAATATCATTGTTACATGTTCCTAAATTGGATTTGAAAAAAGTTTTAACGGTGAAGCTTGGAATTGTTTACAAAGCAGCTACAAAGTGAGTTCTATGCTT</canonical_amplicon>
		<polymorphic_amplicon>TTTAGTGGAAAACGCTAGAATTAGGGTTCCAAAGTTGACGTTTCGCTTTGGGGAATGACATGGATATAACGAATTCAAGATTGGATTTGAAATTGACCCACGAGAATTCAAATATGGATTGTTTGAACCGATATGGTTGCCAGTAAYATCATTGTTACATGTTCCTAAATTGGATTTGAAAAAAGTTTTAACGGTGAAGCTTGGAATTGTTTACAAAGCAGCTACAAAGTGAGTTCTATGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25652</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>261234</contig_pos>
        <strand>+</strand>
        <context>AACAAATTTA[C/T]ACAAMCTTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTATGCTTTTAGTTCTAGCATTTTAAGAAGAGTAAAGATTAACAAATTTA</left_flank>
        <right_flank>ACAACCTTAAAAGCTGTAATGTAGCTTCGAAACCAGAAGATGATGTACCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGCCATAATCTATAGAGCCCTGTTTGCTTTATTTTTGTAGATCGCAACCCGGCCTGTAACCTATAGCTTTGATTGTTCATGAACATATCATTTTCAGGATGCCCATCAATCTTCTAAAACTGCCTCGTTTAGTGGGCGTCCTGGTTGTGTCTGAATTATTGGATTACCAGGAAATATTTCTACTAAGTATATGCTCCCGTCACACCAAAGTTTTAGTGGAAAACGCTAGAATTAGGGTTCCAAAGTTGACGTTTCGCTTTGGGGAATGACATGGATATAACGAATTCAAGATTGGATTTGAAATTGACCCACGAGAATTCAAATATGGATTGTTTGAACCGATATGGTTGCCAGTAATATCATTGTTACATGTTCCTAAATTGGATTTGAAAAAAGTTTTAACGGTGAAGCTTGGAATTGTTTACAAAGCAGCTACAAAGTGAGTTCTATGCTTTTAGTTCTAGCATTTTAAGAAGAGTAAAGATTAACAAATTTATACAACCTTAAAAGCTGTAATGTAGCTTCGAAACCAGAAGATGATGTACCTCGCATTGTTATTTCATACAGTAACCCAGAATTACAATGTTGCAGTGTCCATTTATGGTGCGAGGAAGATGGAAGATTCGTACACCGAATAGAATTTGCAAATGATCCAATGGAAATTCAGATGGTTCTTCAAGACCATATCAATTCAATATTTCACATGAACTAGCCAATTGTTCCTATCAATGAAATGTGAAGGAGTCTGCCAAACATCACAAACGTCGCACATATTAAGATAGAAGACGGCACTGTAGATCCACAATTATTAACAAACGTTTTGACGACTTATTCTGATCATCGGAGCCTCTCAATCGAATCGAGAATAGTTGGAGAATTACCGAAAGATTCTTCATTTTTTCAAGTTCATAATGTTGTTGTAGGATCTTGGTGCGGATCAAATTACTTTCTGGTATTTTTTTCTCTTCGTAATTGCTGAACTTTTGCTCTTATTCAG</canonical>
            <polymorphic>AATTGCCATAATCTATAGAGCCCTGTTTGCTTTATTTTTGTAGATCGCAACCCGGCCTGTAACCTATAGCTTTGATTGTTCATGAACATATCATTTTCAGGATGCCCATCAATCTTCTAAAACTGCCTCGTTTAGTGGGCGTCCTGGTTGTGTCTGAATTATTGGATTACCAGGAAATATTTCTACTAAGTATATGCTCCCGTCACACCAAAGTTTTAGTGGAAAACGCTAGAATTAGGGTTCCAAAGTTGACGTTTCGCTTTGGGGAATGACATGGATATAACGAATTCAAGATTGGATTTGAAATTGACCCACGAGAATTCAAATATGGATTGTTTGAACCGATATGGTTGCCAGTAATATCATTGTTACATGTTCCTAAATTGGATTTGAAAAAAGTTTTAACGGTGAAGCTTGGAATTGTTTACAAAGCAGCTACAAAGTGAGTTCTATGCTTTTAGTTCTAGCATTTTAAGAAGAGTAAAGATTAACAAATTTAYACAACCTTAAAAGCTGTAATGTAGCTTCGAAACCAGAAGATGATGTACCTCGCATTGTTATTTCATACAGTAACCCAGAATTACAATGTTGCAGTGTCCATTTATGGTGCGAGGAAGATGGAAGATTCGTACACCGAATAGAATTTGCAAATGATCCAATGGAAATTCAGATGGTTCTTCAAGACCATATCAATTCAATATTTCACATGAACTAGCCAATTGTTCCTATCAATGAAATGTGAAGGAGTCTGCCAAACATCACAAACGTCGCACATATTAAGATAGAAGACGGCACTGTAGATCCACAATTATTAACAAACGTTTTGACGACTTATTCTGATCATCGGAGCCTCTCAATCGAATCGAGAATAGTTGGAGAATTACCGAAAGATTCTTCATTTTTTCAAGTTCATAATGTTGTTGTAGGATCTTGGTGCGGATCAAATTACTTTCTGGTATTTTTTTCTCTTCGTAATTGCTGAACTTTTGCTCTTATTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCTACAAAGTGAGTTCTATGC</pcr_primer_p1>
		<pcr_primer_p2>TCTTGAAGAACCATCTGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAGCTACAAAGTGAGTTCTATGCTTTTAGTTCTAGCATTTTAAGAAGAGTAAAGATTAACAAATTTATACAACCTTAAAAGCTGTAATGTAGCTTCGAAACCAGAAGATGATGTACCTCGCATTGTTATTTCATACAGTAACCCAGAATTACAATGTTGCAGTGTCCATTTATGGTGCGAGGAAGATGGAAGATTCGTACACCGAATAGAATTTGCAAATGATCCAATGGAAATTCAGATGGTTCTTCAAGA</canonical_amplicon>
		<polymorphic_amplicon>CAGCTACAAAGTGAGTTCTATGCTTTTAGTTCTAGCATTTTAAGAAGAGTAAAGATTAACAAATTTAYACAACCTTAAAAGCTGTAATGTAGCTTCGAAACCAGAAGATGATGTACCTCGCATTGTTATTTCATACAGTAACCCAGAATTACAATGTTGCAGTGTCCATTTATGGTGCGAGGAAGATGGAAGATTCGTACACCGAATAGAATTTGCAAATGATCCAATGGAAATTCAGATGGTTCTTCAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25653</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>261239</contig_pos>
        <strand>+</strand>
        <context>ATTTAYACAA[A/C]CTTAAAAGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTTTAGTTCTAGCATTTTAAGAAGAGTAAAGATTAACAAATTTATACAA</left_flank>
        <right_flank>CTTAAAAGCTGTAATGTAGCTTCGAAACCAGAAGATGATGTACCTCGCAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATAATCTATAGAGCCCTGTTTGCTTTATTTTTGTAGATCGCAACCCGGCCTGTAACCTATAGCTTTGATTGTTCATGAACATATCATTTTCAGGATGCCCATCAATCTTCTAAAACTGCCTCGTTTAGTGGGCGTCCTGGTTGTGTCTGAATTATTGGATTACCAGGAAATATTTCTACTAAGTATATGCTCCCGTCACACCAAAGTTTTAGTGGAAAACGCTAGAATTAGGGTTCCAAAGTTGACGTTTCGCTTTGGGGAATGACATGGATATAACGAATTCAAGATTGGATTTGAAATTGACCCACGAGAATTCAAATATGGATTGTTTGAACCGATATGGTTGCCAGTAATATCATTGTTACATGTTCCTAAATTGGATTTGAAAAAAGTTTTAACGGTGAAGCTTGGAATTGTTTACAAAGCAGCTACAAAGTGAGTTCTATGCTTTTAGTTCTAGCATTTTAAGAAGAGTAAAGATTAACAAATTTATACAACCTTAAAAGCTGTAATGTAGCTTCGAAACCAGAAGATGATGTACCTCGCATTGTTATTTCATACAGTAACCCAGAATTACAATGTTGCAGTGTCCATTTATGGTGCGAGGAAGATGGAAGATTCGTACACCGAATAGAATTTGCAAATGATCCAATGGAAATTCAGATGGTTCTTCAAGACCATATCAATTCAATATTTCACATGAACTAGCCAATTGTTCCTATCAATGAAATGTGAAGGAGTCTGCCAAACATCACAAACGTCGCACATATTAAGATAGAAGACGGCACTGTAGATCCACAATTATTAACAAACGTTTTGACGACTTATTCTGATCATCGGAGCCTCTCAATCGAATCGAGAATAGTTGGAGAATTACCGAAAGATTCTTCATTTTTTCAAGTTCATAATGTTGTTGTAGGATCTTGGTGCGGATCAAATTACTTTCTGGTATTTTTTTCTCTTCGTAATTGCTGAACTTTTGCTCTTATTCAGAATTT</canonical>
            <polymorphic>CCATAATCTATAGAGCCCTGTTTGCTTTATTTTTGTAGATCGCAACCCGGCCTGTAACCTATAGCTTTGATTGTTCATGAACATATCATTTTCAGGATGCCCATCAATCTTCTAAAACTGCCTCGTTTAGTGGGCGTCCTGGTTGTGTCTGAATTATTGGATTACCAGGAAATATTTCTACTAAGTATATGCTCCCGTCACACCAAAGTTTTAGTGGAAAACGCTAGAATTAGGGTTCCAAAGTTGACGTTTCGCTTTGGGGAATGACATGGATATAACGAATTCAAGATTGGATTTGAAATTGACCCACGAGAATTCAAATATGGATTGTTTGAACCGATATGGTTGCCAGTAATATCATTGTTACATGTTCCTAAATTGGATTTGAAAAAAGTTTTAACGGTGAAGCTTGGAATTGTTTACAAAGCAGCTACAAAGTGAGTTCTATGCTTTTAGTTCTAGCATTTTAAGAAGAGTAAAGATTAACAAATTTATACAAMCTTAAAAGCTGTAATGTAGCTTCGAAACCAGAAGATGATGTACCTCGCATTGTTATTTCATACAGTAACCCAGAATTACAATGTTGCAGTGTCCATTTATGGTGCGAGGAAGATGGAAGATTCGTACACCGAATAGAATTTGCAAATGATCCAATGGAAATTCAGATGGTTCTTCAAGACCATATCAATTCAATATTTCACATGAACTAGCCAATTGTTCCTATCAATGAAATGTGAAGGAGTCTGCCAAACATCACAAACGTCGCACATATTAAGATAGAAGACGGCACTGTAGATCCACAATTATTAACAAACGTTTTGACGACTTATTCTGATCATCGGAGCCTCTCAATCGAATCGAGAATAGTTGGAGAATTACCGAAAGATTCTTCATTTTTTCAAGTTCATAATGTTGTTGTAGGATCTTGGTGCGGATCAAATTACTTTCTGGTATTTTTTTCTCTTCGTAATTGCTGAACTTTTGCTCTTATTCAGAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCTACAAAGTGAGTTCTATGC</pcr_primer_p1>
		<pcr_primer_p2>TCTTGAAGAACCATCTGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAGCTACAAAGTGAGTTCTATGCTTTTAGTTCTAGCATTTTAAGAAGAGTAAAGATTAACAAATTTATACAACCTTAAAAGCTGTAATGTAGCTTCGAAACCAGAAGATGATGTACCTCGCATTGTTATTTCATACAGTAACCCAGAATTACAATGTTGCAGTGTCCATTTATGGTGCGAGGAAGATGGAAGATTCGTACACCGAATAGAATTTGCAAATGATCCAATGGAAATTCAGATGGTTCTTCAAGA</canonical_amplicon>
		<polymorphic_amplicon>CAGCTACAAAGTGAGTTCTATGCTTTTAGTTCTAGCATTTTAAGAAGAGTAAAGATTAACAAATTTATACAAMCTTAAAAGCTGTAATGTAGCTTCGAAACCAGAAGATGATGTACCTCGCATTGTTATTTCATACAGTAACCCAGAATTACAATGTTGCAGTGTCCATTTATGGTGCGAGGAAGATGGAAGATTCGTACACCGAATAGAATTTGCAAATGATCCAATGGAAATTCAGATGGTTCTTCAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25654</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>281143</contig_pos>
        <strand>+</strand>
        <context>CTGAGATAAT[A/G]AAGGGAATAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGTAACATCCGCATTTGTGATATTTGAAAACTCCAAAAACTGAGATAAT</left_flank>
        <right_flank>AAGGGAATATTTTATTGTACAAAAAGAAAAGACATAAAAAAACCGAAAAT</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCTGAAAACTGATTACAGTAATTTAACAACCAGATTCAACTTTTCTTACGTCTTGGAAACCTTTAGATTTCTCTCTTCTTTGCTCAGCCGACATATTAACGCCAGATCGTTGAAAAAACTCATTGATAGCTTCTCTATTACGGTTCAGCCTTGCTAAAATTCGTTCATGTTGGGGATTGATATGAAAAGACTGTCAACCTACATTCAACTTCATAATCAATCCGTCGAATTTCCTCGCTTCTATCTTTCAGTTCGGCTGGAAGCTCATCGAGCACTGGAAATATAATAAATGTGGGAAAAATTGAAACAGCCAAAGTATACTTACTCTCTAAGAAATCATCAAGAAAAAGCATTCCCTGGGAGTCGTCCCGATTTGCAGTTTCACTTGTATTGTTCTGAATTTGACAATTGCGATTTCAGTTGAAAAAAAAACAATTGAGATATAAACGGTAACATCCGCATTTGTGATATTTGAAAACTCCAAAAACTGAGATAATGAAGGGAATATTTTATTGTACAAAAAGAAAAGACATAAAAAAACCGAAAATCGAGCGATTCTAAAAACCTAAAGGATCTGCCAAAAACAAACACTCGCTTTTCTTTTTCGATACGACCCTTAGAACATACTTTCTTCCTCCGACGAAAAATGGGATCTATTCAAGATCGAAAGAATAGTTAACAATTGGATACTTTCGTGGATCGTCGAATGGATATGCACGATAAAAGTCGTACGGGTACTGCTTTGGCATAGCTGGATTACGCCAACGGAGAGCGTTCGGGTGGTCGTTACAGAAGTACCAAGCAATCAGGGCCATCGGTACCAACACACGAAGACACATCACGATGGATCCCCACCTAAAAAGGAAACTTTGAAATTTATTTCTTGACACATCAAGAAAACAGGTCATATTTTAAGATAACTTTCTATTCGTTTTTCAACCCATAAAACCTTTTTCAATATTAAAAAAAAGAGCTTACGTAGTGTAATCTTCAGCTTC</canonical>
            <polymorphic>CTCCTGAAAACTGATTACAGTAATTTAACAACCAGATTCAACTTTTCTTACGTCTTGGAAACCTTTAGATTTCTCTCTTCTTTGCTCAGCCGACATATTAACGCCAGATCGTTGAAAAAACTCATTGATAGCTTCTCTATTACGGTTCAGCCTTGCTAAAATTCGTTCATGTTGGGGATTGATATGAAAAGACTGTCAACCTACATTCAACTTCATAATCAATCCGTCGAATTTCCTCGCTTCTATCTTTCAGTTCGGCTGGAAGCTCATCGAGCACTGGAAATATAATAAATGTGGGAAAAATTGAAACAGCCAAAGTATACTTACTCTCTAAGAAATCATCAAGAAAAAGCATTCCCTGGGAGTCGTCCCGATTTGCAGTTTCACTTGTATTGTTCTGAATTTGACAATTGCGATTTCAGTTGAAAAAAAAACAATTGAGATATAAACGGTAACATCCGCATTTGTGATATTTGAAAACTCCAAAAACTGAGATAATRAAGGGAATATTTTATTGTACAAAAAGAAAAGACATAAAAAAACCGAAAATCGAGCGATTCTAAAAACCTAAAGGATCTGCCAAAAACAAACACTCGCTTTTCTTTTTCGATACGACCCTTAGAACATACTTTCTTCCTCCGACGAAAAATGGGATCTATTCAAGATCGAAAGAATAGTTAACAATTGGATACTTTCGTGGATCGTCGAATGGATATGCACGATAAAAGTCGTACGGGTACTGCTTTGGCATAGCTGGATTACGCCAACGGAGAGCGTTCGGGTGGTCGTTACAGAAGTACCAAGCAATCAGGGCCATCGGTACCAACACACGAAGACACATCACGATGGATCCCCACCTAAAAAGGAAACTTTGAAATTTATTTCTTGACACATCAAGAAAACAGGTCATATTTTAAGATAACTTTCTATTCGTTTTTCAACCCATAAAACCTTTTTCAATATTAAAAAAAAGAGCTTACGTAGTGTAATCTTCAGCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTTGTATTGTTCTGAATTTGA</pcr_primer_p1>
		<pcr_primer_p2>AGAAAGTATGTTCTAAGGGTCGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACTTGTATTGTTCTGAATTTGACAATTGCGATTTCAGTTGAAAAAAAAACAATTGAGATATAAACGGTAACATCCGCATTTGTGATATTTGAAAACTCCAAAAACTGAGATAATGAAGGGAATATTTTATTGTACAAAAAGAAAAGACATAAAAAAACCGAAAATCGAGCGATTCTAAAAACCTAAAGGATCTGCCAAAAACAAACACTCGCTTTTCTTTTTCGATACGACCCTTAGAACATACTTTCT</canonical_amplicon>
		<polymorphic_amplicon>CACTTGTATTGTTCTGAATTTGACAATTGCGATTTCAGTTGAAAAAAAAACAATTGAGATATAAACGGTAACATCCGCATTTGTGATATTTGAAAACTCCAAAAACTGAGATAATRAAGGGAATATTTTATTGTACAAAAAGAAAAGACATAAAAAAACCGAAAATCGAGCGATTCTAAAAACCTAAAGGATCTGCCAAAAACAAACACTCGCTTTTCTTTTTCGATACGACCCTTAGAACATACTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25655</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>281564</contig_pos>
        <strand>+</strand>
        <context>ATTTTAAGAT[A/T]ACTTTCTATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGAAATTTATTTCTTGACACATCAAGAAAACAGGTCATATTTTAAGAT</left_flank>
        <right_flank>ACTTTCTATTCGTTTTTCAACCCATAAAACCTTTTTCAATATTAAAAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGAAAAAAAAACAATTGAGATATAAACGGTAACATCCGCATTTGTGATATTTGAAAACTCCAAAAACTGAGATAATGAAGGGAATATTTTATTGTACAAAAAGAAAAGACATAAAAAAACCGAAAATCGAGCGATTCTAAAAACCTAAAGGATCTGCCAAAAACAAACACTCGCTTTTCTTTTTCGATACGACCCTTAGAACATACTTTCTTCCTCCGACGAAAAATGGGATCTATTCAAGATCGAAAGAATAGTTAACAATTGGATACTTTCGTGGATCGTCGAATGGATATGCACGATAAAAGTCGTACGGGTACTGCTTTGGCATAGCTGGATTACGCCAACGGAGAGCGTTCGGGTGGTCGTTACAGAAGTACCAAGCAATCAGGGCCATCGGTACCAACACACGAAGACACATCACGATGGATCCCCACCTAAAAAGGAAACTTTGAAATTTATTTCTTGACACATCAAGAAAACAGGTCATATTTTAAGATAACTTTCTATTCGTTTTTCAACCCATAAAACCTTTTTCAATATTAAAAAAAAGAGCTTACGTAGTGTAATCTTCAGCTTCAAGTCCTGTGAAAGTGAGACGATCTCCGCGATAGCGCATCATATCAATTGGTACGAGCTCTCCCCAATTTCTGCGATTTTGACGATCAGTCCAAGCTTCATACGGATCTTTGTGGTCGTATGTAACTACTCCAAGATCTGGATAGTCTCCGGCAAACTTGATCACGTCATCTTTGTCCATAGAATGATAATCTTCTGGTCGAAGACCATATTTTACGGCTGCTGCACGACGCTCTTCTTCATTGGTTGGTGGAGCATTCGGTTTGTGATCACGGGGGTACCAGCCATCGAAAGTCAGAGGTCCTCGCACTTAAAAAGAAATGGATTGAATTCTCGGCAAGAAAAATGTGGAAAAGTCTCCAGAAAGGATACATCCCTTGACATAAAATTTTTCTGCACGAAAAAATGTAAATTTTAACAAA</canonical>
            <polymorphic>GTTGAAAAAAAAACAATTGAGATATAAACGGTAACATCCGCATTTGTGATATTTGAAAACTCCAAAAACTGAGATAATGAAGGGAATATTTTATTGTACAAAAAGAAAAGACATAAAAAAACCGAAAATCGAGCGATTCTAAAAACCTAAAGGATCTGCCAAAAACAAACACTCGCTTTTCTTTTTCGATACGACCCTTAGAACATACTTTCTTCCTCCGACGAAAAATGGGATCTATTCAAGATCGAAAGAATAGTTAACAATTGGATACTTTCGTGGATCGTCGAATGGATATGCACGATAAAAGTCGTACGGGTACTGCTTTGGCATAGCTGGATTACGCCAACGGAGAGCGTTCGGGTGGTCGTTACAGAAGTACCAAGCAATCAGGGCCATCGGTACCAACACACGAAGACACATCACGATGGATCCCCACCTAAAAAGGAAACTTTGAAATTTATTTCTTGACACATCAAGAAAACAGGTCATATTTTAAGATWACTTTCTATTCGTTTTTCAACCCATAAAACCTTTTTCAATATTAAAAAAAAGAGCTTACGTAGTGTAATCTTCAGCTTCAAGTCCTGTGAAAGTGAGACGATCTCCGCGATAGCGCATCATATCAATTGGTACGAGCTCTCCCCAATTTCTGCGATTTTGACGATCAGTCCAAGCTTCATACGGATCTTTGTGGTCGTATGTAACTACTCCAAGATCTGGATAGTCTCCGGCAAACTTGATCACGTCATCTTTGTCCATAGAATGATAATCTTCTGGTCGAAGACCATATTTTACGGCTGCTGCACGACGCTCTTCTTCATTGGTTGGTGGAGCATTCGGTTTGTGATCACGGGGGTACCAGCCATCGAAAGTCAGAGGTCCTCGCACTTAAAAAGAAATGGATTGAATTCTCGGCAAGAAAAATGTGGAAAAGTCTCCAGAAAGGATACATCCCTTGACATAAAATTTTTCTGCACGAAAAAATGTAAATTTTAACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTAAAAAGGAAACTTTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CGTATGAAGCTTGGACTGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACCTAAAAAGGAAACTTTGAAATTTATTTCTTGACACATCAAGAAAACAGGTCATATTTTAAGATAACTTTCTATTCGTTTTTCAACCCATAAAACCTTTTTCAATATTAAAAAAAAGAGCTTACGTAGTGTAATCTTCAGCTTCAAGTCCTGTGAAAGTGAGACGATCTCCGCGATAGCGCATCATATCAATTGGTACGAGCTCTCCCCAATTTCTGCGATTTTGACGATCAGTCCAAGCTTCATACG</canonical_amplicon>
		<polymorphic_amplicon>ACCTAAAAAGGAAACTTTGAAATTTATTTCTTGACACATCAAGAAAACAGGTCATATTTTAAGATWACTTTCTATTCGTTTTTCAACCCATAAAACCTTTTTCAATATTAAAAAAAAGAGCTTACGTAGTGTAATCTTCAGCTTCAAGTCCTGTGAAAGTGAGACGATCTCCGCGATAGCGCATCATATCAATTGGTACGAGCTCTCCCCAATTTCTGCGATTTTGACGATCAGTCCAAGCTTCATACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25656</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>285469</contig_pos>
        <strand>+</strand>
        <context>AGCCTTGTTT[C/T]TAGGTCGTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTGCTCCTGTCGTTATGACATGTTGCTCTGTTATCAAAGCCTTGTTT</left_flank>
        <right_flank>TAGGTCGTGTGACCTTCTCCAGATAATTAATGATAAGGGAATGGGGAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGCTGCATCTACATGCAATACAAGGGCAACATCAGAAGTTGAACCAGATCTTCTTGGGGAAGAAACTGGACTTGAAGAAAGATCTTTGTCGTTTATCGAGGCTTTGCACGAATTAGAGACAACCGTCGAAGAAAGTGTTCTAGCACCCCGGAGTGTATCGCTCACTGATAACTTTTTGGATCAAAAGTTGAAAGAAAACAATAAAACGGAAGACGATGAAGAAGTTTTCGATGGTAAGTTGCATTCCAAAAATACCCTTCTCGGTAACAACTCTCCAATTCAGTCTCTATGGATCCAGAAGAAGGAACCTCCACGAGGCTACCATCTGAGCCTCTCGTCACTCGAAGCAAACCTGTCACGATACAAACTGGAAGTCGACGACAATTAATACACAGGAGACAACAAAAGGTTTGTTCAGACACCTCGTTTTCCCGGAAAATTTTTGTCTTTTTTGCTCCTGTCGTTATGACATGTTGCTCTGTTATCAAAGCCTTGTTTCTAGGTCGTGTGACCTTCTCCAGATAATTAATGATAAGGGAATGGGGAAGAAAAATTAAATGAGCAGAAAGCAATCTCGTAATAAAGAGAAGTCTAGGAAAAAGATGAAAGGGGTACTCCCTGGACATCACCGGCAACTTCTACTCGGGGATTGGTAAGATTCCGGATAAGACCGCTACTAAAGCCGTCCAATCTCCGACAAACGTATGGTAAGGTTCCAACCATGATCTGACCAAGCTATACAACCGTTCTTGGGCAACTTCCAACCAGAACCCGGCCAATATCCAACTGGAAGTTCTGAATGGAAATTAAATCCAATAGCCGAGCCCTTATGTTATAGATCTGCCATAATGTTTTCATCGTTCACTTCAGAAGGACAAGTGGAAGGTTCATATTATAATGCCTTCACTTCCTTATTTTCCATCTGAAGGCAACTTCCAAAATCAGACAACACAAAAATCACACTTTTGAACTTTCTATCCTCTTTTCTCTTTTCGTCAC</canonical>
            <polymorphic>CTGCTGCATCTACATGCAATACAAGGGCAACATCAGAAGTTGAACCAGATCTTCTTGGGGAAGAAACTGGACTTGAAGAAAGATCTTTGTCGTTTATCGAGGCTTTGCACGAATTAGAGACAACCGTCGAAGAAAGTGTTCTAGCACCCCGGAGTGTATCGCTCACTGATAACTTTTTGGATCAAAAGTTGAAAGAAAACAATAAAACGGAAGACGATGAAGAAGTTTTCGATGGTAAGTTGCATTCCAAAAATACCCTTCTCGGTAACAACTCTCCAATTCAGTCTCTATGGATCCAGAAGAAGGAACCTCCACGAGGCTACCATCTGAGCCTCTCGTCACTCGAAGCAAACCTGTCACGATACAAACTGGAAGTCGACGACAATTAATACACAGGAGACAACAAAAGGTTTGTTCAGACACCTCGTTTTCCCGGAAAATTTTTGTCTTTTTTGCTCCTGTCGTTATGACATGTTGCTCTGTTATCAAAGCCTTGTTTYTAGGTCGTGTGACCTTCTCCAGATAATTAATGATAAGGGAATGGGGAAGAAAAATTAAATGAGCAGAAAGCAATCTCGTAATAAAGAGAAGTCTAGGAAAAAGATGAAAGGGGTACTCCCTGGACATCACCGGCAACTTCTACTCGGGGATTGGTAAGATTCCGGATAAGACCGCTACTAAAGCCGTCCAATCTCCGACAAACGTATGGTAAGGTTCCAACCATGATCTGACCAAGCTATACAACCGTTCTTGGGCAACTTCCAACCAGAACCCGGCCAATATCCAACTGGAAGTTCTGAATGGAAATTAAATCCAATAGCCGAGCCCTTATGTTATAGATCTGCCATAATGTTTTCATCGTTCACTTCAGAAGGACAAGTGGAAGGTTCATATTATAATGCCTTCACTTCCTTATTTTCCATCTGAAGGCAACTTCCAAAATCAGACAACACAAAAATCACACTTTTGAACTTTCTATCCTCTTTTCTCTTTTCGTCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>407 359 141 93</canonical_bands>
                <polymorphic_bands>452 407 141</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGTCGACGACAATTAATACAC</pcr_primer_p1>
		<pcr_primer_p2>GAGTACCCCTTTCATCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAGTCGACGACAATTAATACACAGGAGACAACAAAAGGTTTGTTCAGACACCTCGTTTTCCCGGAAAATTTTTGTCTTTTTTGCTCCTGTCGTTATGACATGTTGCTCTGTTATCAAAGCCTTGTTTCTAGGTCGTGTGACCTTCTCCAGATAATTAATGATAAGGGAATGGGGAAGAAAAATTAAATGAGCAGAAAGCAATCTCGTAATAAAGAGAAGTCTAGGAAAAAGATGAAAGGGGTACTC</canonical_amplicon>
		<polymorphic_amplicon>GAAGTCGACGACAATTAATACACAGGAGACAACAAAAGGTTTGTTCAGACACCTCGTTTTCCCGGAAAATTTTTGTCTTTTTTGCTCCTGTCGTTATGACATGTTGCTCTGTTATCAAAGCCTTGTTTYTAGGTCGTGTGACCTTCTCCAGATAATTAATGATAAGGGAATGGGGAAGAAAAATTAAATGAGCAGAAAGCAATCTCGTAATAAAGAGAAGTCTAGGAAAAAGATGAAAGGGGTACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25657</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>285667</contig_pos>
        <strand></strand>
        <context>ccaatctccg[A/G]caaacgtatg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGATTGGTAAGATTCCGGATAAGACCGCTACTAAAGCCGTCCAATCTCCG</left_flank>
        <right_flank>CAAACGTATGGTAAGGTTCCAACCATGATCTGACCAAGCTATACAACCGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAATAAAACGGAAGACGATGAAGAAGTTTTCGATGGTAAGTTGCATTCCAAAAATACCCTTCTCGGTAACAACTCTCCAATTCAGTCTCTATGGATCCAGAAGAAGGAACCTCCACGAGGCTACCATCTGAGCCTCTCGTCACTCGAAGCAAACCTGTCACGATACAAACTGGAAGTCGACGACAATTAATACACAGGAGACAACAAAAGGTTTGTTCAGACACCTCGTTTTCCCGGAAAATTTTTGTCTTTTTTGCTCCTGTCGTTATGACATGTTGCTCTGTTATCAAAGCCTTGTTTCTAGGTCGTGTGACCTTCTCCAGATAATTAATGATAAGGGAATGGGGAAGAAAAATTAAATGAGCAGAAAGCAATCTCGTAATAAAGAGAAGTCTAGGAAAAAGATGAAAGGGGTACTCCCTGGACATCACCGGCAACTTCTACTCGGGGATTGGTAAGATTCCGGATAAGACCGCTACTAAAGCCGTCCAATCTCCGACAAACGTATGGTAAGGTTCCAACCATGATCTGACCAAGCTATACAACCGTTCTTGGGCAACTTCCAACCAGAACCCGGCCAATATCCAACTGGAAGTTCTGAATGGAAATTAAATCCAATAGCCGAGCCCTTATGTTATAGATCTGCCATAATGTTTTCATCGTTCACTTCAGAAGGACAAGTGGAAGGTTCATATTATAATGCCTTCACTTCCTTATTTTCCATCTGAAGGCAACTTCCAAAATCAGACAACACAAAAATCACACTTTTGAACTTTCTATCCTCTTTTCTCTTTTCGTCACATTTAGACGCATTCACATGACAATGAGCCCCGAAAAGGCGTTCGATAAGACGGCGGGTGGTGCAATGGCAGAAAAATGATAAGATGATAGTATAGCATAGTGCTTTCTCACCTGAGATCACTAACGCATTCTCGTTTCATTTTTTTTTAATCTAAAAGCTTCAAGCTATGAGAATCCGTACTCTAACTCCTCTTGCAT</canonical>
            <polymorphic>ACAATAAAACGGAAGACGATGAAGAAGTTTTCGATGGTAAGTTGCATTCCAAAAATACCCTTCTCGGTAACAACTCTCCAATTCAGTCTCTATGGATCCAGAAGAAGGAACCTCCACGAGGCTACCATCTGAGCCTCTCGTCACTCGAAGCAAACCTGTCACGATACAAACTGGAAGTCGACGACAATTAATACACAGGAGACAACAAAAGGTTTGTTCAGACACCTCGTTTTCCCGGAAAATTTTTGTCTTTTTTGCTCCTGTCGTTATGACATGTTGCTCTGTTATCAAAGCCTTGTTTCTAGGTCGTGTGACCTTCTCCAGATAATTAATGATAAGGGAATGGGGAAGAAAAATTAAATGAGCAGAAAGCAATCTCGTAATAAAGAGAAGTCTAGGAAAAAGATGAAAGGGGTACTCCCTGGACATCACCGGCAACTTCTACTCGGGGATTGGTAAGATTCCGGATAAGACCGCTACTAAAGCCGTCCAATCTCCGRCAAACGTATGGTAAGGTTCCAACCATGATCTGACCAAGCTATACAACCGTTCTTGGGCAACTTCCAACCAGAACCCGGCCAATATCCAACTGGAAGTTCTGAATGGAAATTAAATCCAATAGCCGAGCCCTTATGTTATAGATCTGCCATAATGTTTTCATCGTTCACTTCAGAAGGACAAGTGGAAGGTTCATATTATAATGCCTTCACTTCCTTATTTTCCATCTGAAGGCAACTTCCAAAATCAGACAACACAAAAATCACACTTTTGAACTTTCTATCCTCTTTTCTCTTTTCGTCACATTTAGACGCATTCACATGACAATGAGCCCCGAAAAGGCGTTCGATAAGACGGCGGGTGGTGCAATGGCAGAAAAATGATAAGATGATAGTATAGCATAGTGCTTTCTCACCTGAGATCACTAACGCATTCTCGTTTCATTTTTTTTTAATCTAAAAGCTTCAAGCTATGAGAATCCGTACTCTAACTCCTCTTGCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>278 253 130 90 72 69 55 33 20</canonical_bands>
                <polymorphic_bands>311 253 130 90 72 69 55 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAAAGCAATCTCGTAATAAAG</pcr_primer_p1>
		<pcr_primer_p2>GGATTTAATTTCCATTCAGAACT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAGAAAGCAATCTCGTAATAAAGAGAAGTCTAGGAAAAAGATGAAAGGGGTACTCCCTGGACATCACCGGCAACTTCTACTCGGGGATTGGTAAGATTCCGGATAAGACCGCTACTAAAGCCGTCCAATCTCCGACAAACGTATGGTAAGGTTCCAACCATGATCTGACCAAGCTATACAACCGTTCTTGGGCAACTTCCAACCAGAACCCGGCCAATATCCAACTGGAAGTTCTGAATGGAAATTAAATCC</canonical_amplicon>
		<polymorphic_amplicon>CAGAAAGCAATCTCGTAATAAAGAGAAGTCTAGGAAAAAGATGAAAGGGGTACTCCCTGGACATCACCGGCAACTTCTACTCGGGGATTGGTAAGATTCCGGATAAGACCGCTACTAAAGCCGTCCAATCTCCGRCAAACGTATGGTAAGGTTCCAACCATGATCTGACCAAGCTATACAACCGTTCTTGGGCAACTTCCAACCAGAACCCGGCCAATATCCAACTGGAAGTTCTGAATGGAAATTAAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25658</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>316391</contig_pos>
        <strand>+</strand>
        <context>ATTAATATTG[A/C]GTTAGAGAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGATAAGAAAAATTTGGGAGAGGAGAGACAGGAAATGACGATTAATATTG</left_flank>
        <right_flank>GTTAGAGAGGAGGAGGACAGAGAAAGAAGACCAGGAGCAGATGGAGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCCCAAGTGACATGATCTTCTCCATAATTGACGTAATTTTTGAAGAACACAAATTGAAAAAAAATGTTCAAAAAAGGCCAAATCTGGACTCCTCGGGAAGACCCTTGAAATTTGTGCTCCTCTTTCGTATTCCGAAGGAGACCGGAAAGTGTCTCCCCAAATGTTTTTCTCAGTTTGTGTGTGCTCATGCTCAAAGAGGAGTCCAATCGAGGATGTATGGAGAGAAGGACAAAATGACAAAAAAAAGTTGGTAGTTGGCCATTTTGAAGAAAGAAGGGGCAAGAAGAAAAGTTGATGGGAATTTAAAAGCAGATAAGAAATGGAAAAGAAAGTGTTCTGCCAATAAAATGTTTGTTGGTGGTGGATGGTGGTGGATGGTGGTGGATGGTGTTGGGTGGAAAATGGGTGTATGCTTTTGTTTTGTGTTCGTGTTTCTAGATTGAGTTAAGATAAGAAAAATTTGGGAGAGGAGAGACAGGAAATGACGATTAATATTGAGTTAGAGAGGAGGAGGACAGAGAAAGAAGACCAGGAGCAGATGGAGAAAATGAAGAAGGAGCACACGCCATAAATATATGTCAAAAGAGTCAAATTATTGATGAGAAGACCAGAGGGAATCATATTACATGACCATTAAATTTTAAAATTTGTTTTCGCGAAAAAAGTCAATTTTAAAATTTCAAATGATTTTTAGTAGGTAGAACTAGACTACGAATTACCGTAAAAGCCGTAGAGCCCCCACACTATCAAACTTGAGCCCAATTATCTCGGTTCCTATACAAGATATCAAAAATGTGACAACTGATAAAATGTTTCTGGTATTATGATAAACAAATTATCAGTTGACAACTTTTTGATATCATTTGACAGGAACGGAGGTAAATTGGATCAAAATTAAAAAGTTTGGATGCTCTTCTAGAGGTATTACGGTAGCTGAACTTCATAAAAGTGAGTTTTTTAGGTTGTCAAACGGGCTCGGGTAATAGGTCAATCGAATT</canonical>
            <polymorphic>GAGCCCAAGTGACATGATCTTCTCCATAATTGACGTAATTTTTGAAGAACACAAATTGAAAAAAAATGTTCAAAAAAGGCCAAATCTGGACTCCTCGGGAAGACCCTTGAAATTTGTGCTCCTCTTTCGTATTCCGAAGGAGACCGGAAAGTGTCTCCCCAAATGTTTTTCTCAGTTTGTGTGTGCTCATGCTCAAAGAGGAGTCCAATCGAGGATGTATGGAGAGAAGGACAAAATGACAAAAAAAAGTTGGTAGTTGGCCATTTTGAAGAAAGAAGGGGCAAGAAGAAAAGTTGATGGGAATTTAAAAGCAGATAAGAAATGGAAAAGAAAGTGTTCTGCCAATAAAATGTTTGTTGGTGGTGGATGGTGGTGGATGGTGGTGGATGGTGTTGGGTGGAAAATGGGTGTATGCTTTTGTTTTGTGTTCGTGTTTCTAGATTGAGTTAAGATAAGAAAAATTTGGGAGAGGAGAGACAGGAAATGACGATTAATATTGMGTTAGAGAGGAGGAGGACAGAGAAAGAAGACCAGGAGCAGATGGAGAAAATGAAGAAGGAGCACACGCCATAAATATATGTCAAAAGAGTCAAATTATTGATGAGAAGACCAGAGGGAATCATATTACATGACCATTAAATTTTAAAATTTGTTTTCGCGAAAAAAGTCAATTTTAAAATTTCAAATGATTTTTAGTAGGTAGAACTAGACTACGAATTACCGTAAAAGCCGTAGAGCCCCCACACTATCAAACTTGAGCCCAATTATCTCGGTTCCTATACAAGATATCAAAAATGTGACAACTGATAAAATGTTTCTGGTATTATGATAAACAAATTATCAGTTGACAACTTTTTGATATCATTTGACAGGAACGGAGGTAAATTGGATCAAAATTAAAAAGTTTGGATGCTCTTCTAGAGGTATTACGGTAGCTGAACTTCATAAAAGTGAGTTTTTTAGGTTGTCAAACGGGCTCGGGTAATAGGTCAATCGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAATGGAAAAGAAAGTGTTC</pcr_primer_p1>
		<pcr_primer_p2>GTGCTCCTTCTTCATTTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGAAATGGAAAAGAAAGTGTTCTGCCAATAAAATGTTTGTTGGTGGTGGATGGTGGTGGATGGTGGTGGATGGTGTTGGGTGGAAAATGGGTGTATGCTTTTGTTTTGTGTTCGTGTTTCTAGATTGAGTTAAGATAAGAAAAATTTGGGAGAGGAGAGACAGGAAATGACGATTAATATTGAGTTAGAGAGGAGGAGGACAGAGAAAGAAGACCAGGAGCAGATGGAGAAAATGAAGAAGGAGCAC</canonical_amplicon>
		<polymorphic_amplicon>AAGAAATGGAAAAGAAAGTGTTCTGCCAATAAAATGTTTGTTGGTGGTGGATGGTGGTGGATGGTGGTGGATGGTGTTGGGTGGAAAATGGGTGTATGCTTTTGTTTTGTGTTCGTGTTTCTAGATTGAGTTAAGATAAGAAAAATTTGGGAGAGGAGAGACAGGAAATGACGATTAATATTGMGTTAGAGAGGAGGAGGACAGAGAAAGAAGACCAGGAGCAGATGGAGAAAATGAAGAAGGAGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25659</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>316691</contig_pos>
        <strand></strand>
        <context>caaaaatgtg[A/T]caactgataa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAACTTGAGCCCAATTATCTCGGTTCCTATACAAGATATCAAAAATGTG</left_flank>
        <right_flank>CAACTGATAAAATGTTTCTGGTATTATGATAAACAAATTATCAGTTGACA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTTAAAAGCAGATAAGAAATGGAAAAGAAAGTGTTCTGCCAATAAAATGTTTGTTGGTGGTGGATGGTGGTGGATGGTGGTGGATGGTGTTGGGTGGAAAATGGGTGTATGCTTTTGTTTTGTGTTCGTGTTTCTAGATTGAGTTAAGATAAGAAAAATTTGGGAGAGGAGAGACAGGAAATGACGATTAATATTGAGTTAGAGAGGAGGAGGACAGAGAAAGAAGACCAGGAGCAGATGGAGAAAATGAAGAAGGAGCACACGCCATAAATATATGTCAAAAGAGTCAAATTATTGATGAGAAGACCAGAGGGAATCATATTACATGACCATTAAATTTTAAAATTTGTTTTCGCGAAAAAAGTCAATTTTAAAATTTCAAATGATTTTTAGTAGGTAGAACTAGACTACGAATTACCGTAAAAGCCGTAGAGCCCCCACACTATCAAACTTGAGCCCAATTATCTCGGTTCCTATACAAGATATCAAAAATGTGACAACTGATAAAATGTTTCTGGTATTATGATAAACAAATTATCAGTTGACAACTTTTTGATATCATTTGACAGGAACGGAGGTAAATTGGATCAAAATTAAAAAGTTTGGATGCTCTTCTAGAGGTATTACGGTAGCTGAACTTCATAAAAGTGAGTTTTTTAGGTTGTCAAACGGGCTCGGGTAATAGGTCAATCGAATTCCAAACTCTCCAGTTTTGTAATTTTGCACTTTTTTAAATTTGTTTTTTTTAGAATTTACAATGTTAGAATTTTCTAACATTTGGAAATTTTCGAAAATTTACATTTTCTGAATTCAAAACTTTTCGGAATTTTTGAATTAAAAAAAGCGTTTACACAAACTTCCCAAGTTTTTAAAAGTTCGAAATTCCAGATTCCTGAATTTCAGAATTTTTGATTTTTTGAGATATTGATTTTCAGATGTTCAATTTTTTGAATTATTGCAGTTTTACTCTAATTGCCCTTCTGTTACAGGTTCTACG</canonical>
            <polymorphic>GAATTTAAAAGCAGATAAGAAATGGAAAAGAAAGTGTTCTGCCAATAAAATGTTTGTTGGTGGTGGATGGTGGTGGATGGTGGTGGATGGTGTTGGGTGGAAAATGGGTGTATGCTTTTGTTTTGTGTTCGTGTTTCTAGATTGAGTTAAGATAAGAAAAATTTGGGAGAGGAGAGACAGGAAATGACGATTAATATTGAGTTAGAGAGGAGGAGGACAGAGAAAGAAGACCAGGAGCAGATGGAGAAAATGAAGAAGGAGCACACGCCATAAATATATGTCAAAAGAGTCAAATTATTGATGAGAAGACCAGAGGGAATCATATTACATGACCATTAAATTTTAAAATTTGTTTTCGCGAAAAAAGTCAATTTTAAAATTTCAAATGATTTTTAGTAGGTAGAACTAGACTACGAATTACCGTAAAAGCCGTAGAGCCCCCACACTATCAAACTTGAGCCCAATTATCTCGGTTCCTATACAAGATATCAAAAATGTGWCAACTGATAAAATGTTTCTGGTATTATGATAAACAAATTATCAGTTGACAACTTTTTGATATCATTTGACAGGAACGGAGGTAAATTGGATCAAAATTAAAAAGTTTGGATGCTCTTCTAGAGGTATTACGGTAGCTGAACTTCATAAAAGTGAGTTTTTTAGGTTGTCAAACGGGCTCGGGTAATAGGTCAATCGAATTCCAAACTCTCCAGTTTTGTAATTTTGCACTTTTTTAAATTTGTTTTTTTTAGAATTTACAATGTTAGAATTTTCTAACATTTGGAAATTTTCGAAAATTTACATTTTCTGAATTCAAAACTTTTCGGAATTTTTGAATTAAAAAAAGCGTTTACACAAACTTCCCAAGTTTTTAAAAGTTCGAAATTCCAGATTCCTGAATTTCAGAATTTTTGATTTTTTGAGATATTGATTTTCAGATGTTCAATTTTTTGAATTATTGCAGTTTTACTCTAATTGCCCTTCTGTTACAGGTTCTACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>496 489 15</canonical_bands>
                <polymorphic_bands>985 15</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTTCAAATGATTTTTAGTAGG</pcr_primer_p1>
		<pcr_primer_p2>GCAAAATTACAAAACTGGAGA</pcr_primer_p2>
		<pcr_amplicon_size>352</pcr_amplicon_size>
		<canonical_amplicon>AAAATTTCAAATGATTTTTAGTAGGTAGAACTAGACTACGAATTACCGTAAAAGCCGTAGAGCCCCCACACTATCAAACTTGAGCCCAATTATCTCGGTTCCTATACAAGATATCAAAAATGTGACAACTGATAAAATGTTTCTGGTATTATGATAAACAAATTATCAGTTGACAACTTTTTGATATCATTTGACAGGAACGGAGGTAAATTGGATCAAAATTAAAAAGTTTGGATGCTCTTCTAGAGGTATTACGGTAGCTGAACTTCATAAAAGTGAGTTTTTTAGGTTGTCAAACGGGCTCGGGTAATAGGTCAATCGAATTCCAAACTCTCCAGTTTTGTAATTTTGC</canonical_amplicon>
		<polymorphic_amplicon>AAAATTTCAAATGATTTTTAGTAGGTAGAACTAGACTACGAATTACCGTAAAAGCCGTAGAGCCCCCACACTATCAAACTTGAGCCCAATTATCTCGGTTCCTATACAAGATATCAAAAATGTGWCAACTGATAAAATGTTTCTGGTATTATGATAAACAAATTATCAGTTGACAACTTTTTGATATCATTTGACAGGAACGGAGGTAAATTGGATCAAAATTAAAAAGTTTGGATGCTCTTCTAGAGGTATTACGGTAGCTGAACTTCATAAAAGTGAGTTTTTTAGGTTGTCAAACGGGCTCGGGTAATAGGTCAATCGAATTCCAAACTCTCCAGTTTTGTAATTTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25660</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>316712</contig_pos>
        <strand></strand>
        <context>aatgtttctg[G/A]tattatgata</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGGTTCCTATACAAGATATCAAAAATGTGACAACTGATAAAATGTTTCTG</left_flank>
        <right_flank>TATTATGATAAACAAATTATCAGTTGACAACTTTTTGATATCATTTGACA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGAAAAGAAAGTGTTCTGCCAATAAAATGTTTGTTGGTGGTGGATGGTGGTGGATGGTGGTGGATGGTGTTGGGTGGAAAATGGGTGTATGCTTTTGTTTTGTGTTCGTGTTTCTAGATTGAGTTAAGATAAGAAAAATTTGGGAGAGGAGAGACAGGAAATGACGATTAATATTGAGTTAGAGAGGAGGAGGACAGAGAAAGAAGACCAGGAGCAGATGGAGAAAATGAAGAAGGAGCACACGCCATAAATATATGTCAAAAGAGTCAAATTATTGATGAGAAGACCAGAGGGAATCATATTACATGACCATTAAATTTTAAAATTTGTTTTCGCGAAAAAAGTCAATTTTAAAATTTCAAATGATTTTTAGTAGGTAGAACTAGACTACGAATTACCGTAAAAGCCGTAGAGCCCCCACACTATCAAACTTGAGCCCAATTATCTCGGTTCCTATACAAGATATCAAAAATGTGACAACTGATAAAATGTTTCTGGTATTATGATAAACAAATTATCAGTTGACAACTTTTTGATATCATTTGACAGGAACGGAGGTAAATTGGATCAAAATTAAAAAGTTTGGATGCTCTTCTAGAGGTATTACGGTAGCTGAACTTCATAAAAGTGAGTTTTTTAGGTTGTCAAACGGGCTCGGGTAATAGGTCAATCGAATTCCAAACTCTCCAGTTTTGTAATTTTGCACTTTTTTAAATTTGTTTTTTTTAGAATTTACAATGTTAGAATTTTCTAACATTTGGAAATTTTCGAAAATTTACATTTTCTGAATTCAAAACTTTTCGGAATTTTTGAATTAAAAAAAGCGTTTACACAAACTTCCCAAGTTTTTAAAAGTTCGAAATTCCAGATTCCTGAATTTCAGAATTTTTGATTTTTTGAGATATTGATTTTCAGATGTTCAATTTTTTGAATTATTGCAGTTTTACTCTAATTGCCCTTCTGTTACAGGTTCTACGGTATGTCCGAATGTCCAAAGC</canonical>
            <polymorphic>ATGGAAAAGAAAGTGTTCTGCCAATAAAATGTTTGTTGGTGGTGGATGGTGGTGGATGGTGGTGGATGGTGTTGGGTGGAAAATGGGTGTATGCTTTTGTTTTGTGTTCGTGTTTCTAGATTGAGTTAAGATAAGAAAAATTTGGGAGAGGAGAGACAGGAAATGACGATTAATATTGAGTTAGAGAGGAGGAGGACAGAGAAAGAAGACCAGGAGCAGATGGAGAAAATGAAGAAGGAGCACACGCCATAAATATATGTCAAAAGAGTCAAATTATTGATGAGAAGACCAGAGGGAATCATATTACATGACCATTAAATTTTAAAATTTGTTTTCGCGAAAAAAGTCAATTTTAAAATTTCAAATGATTTTTAGTAGGTAGAACTAGACTACGAATTACCGTAAAAGCCGTAGAGCCCCCACACTATCAAACTTGAGCCCAATTATCTCGGTTCCTATACAAGATATCAAAAATGTGACAACTGATAAAATGTTTCTGRTATTATGATAAACAAATTATCAGTTGACAACTTTTTGATATCATTTGACAGGAACGGAGGTAAATTGGATCAAAATTAAAAAGTTTGGATGCTCTTCTAGAGGTATTACGGTAGCTGAACTTCATAAAAGTGAGTTTTTTAGGTTGTCAAACGGGCTCGGGTAATAGGTCAATCGAATTCCAAACTCTCCAGTTTTGTAATTTTGCACTTTTTTAAATTTGTTTTTTTTAGAATTTACAATGTTAGAATTTTCTAACATTTGGAAATTTTCGAAAATTTACATTTTCTGAATTCAAAACTTTTCGGAATTTTTGAATTAAAAAAAGCGTTTACACAAACTTCCCAAGTTTTTAAAAGTTCGAAATTCCAGATTCCTGAATTTCAGAATTTTTGATTTTTTGAGATATTGATTTTCAGATGTTCAATTTTTTGAATTATTGCAGTTTTACTCTAATTGCCCTTCTGTTACAGGTTCTACGGTATGTCCGAATGTCCAAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTTCAAATGATTTTTAGTAGG</pcr_primer_p1>
		<pcr_primer_p2>GCAAAATTACAAAACTGGAGA</pcr_primer_p2>
		<pcr_amplicon_size>352</pcr_amplicon_size>
		<canonical_amplicon>AAAATTTCAAATGATTTTTAGTAGGTAGAACTAGACTACGAATTACCGTAAAAGCCGTAGAGCCCCCACACTATCAAACTTGAGCCCAATTATCTCGGTTCCTATACAAGATATCAAAAATGTGACAACTGATAAAATGTTTCTGGTATTATGATAAACAAATTATCAGTTGACAACTTTTTGATATCATTTGACAGGAACGGAGGTAAATTGGATCAAAATTAAAAAGTTTGGATGCTCTTCTAGAGGTATTACGGTAGCTGAACTTCATAAAAGTGAGTTTTTTAGGTTGTCAAACGGGCTCGGGTAATAGGTCAATCGAATTCCAAACTCTCCAGTTTTGTAATTTTGC</canonical_amplicon>
		<polymorphic_amplicon>AAAATTTCAAATGATTTTTAGTAGGTAGAACTAGACTACGAATTACCGTAAAAGCCGTAGAGCCCCCACACTATCAAACTTGAGCCCAATTATCTCGGTTCCTATACAAGATATCAAAAATGTGACAACTGATAAAATGTTTCTGRTATTATGATAAACAAATTATCAGTTGACAACTTTTTGATATCATTTGACAGGAACGGAGGTAAATTGGATCAAAATTAAAAAGTTTGGATGCTCTTCTAGAGGTATTACGGTAGCTGAACTTCATAAAAGTGAGTTTTTTAGGTTGTCAAACGGGCTCGGGTAATAGGTCAATCGAATTCCAAACTCTCCAGTTTTGTAATTTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25661</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>316787</contig_pos>
        <strand></strand>
        <context>ttggatcaaa[A/C]ttaaaaagtt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGACAACTTTTTGATATCATTTGACAGGAACGGAGGTAAATTGGATCAAA</left_flank>
        <right_flank>TTAAAAAGTTTGGATGCTCTTCTAGAGGTATTACGGTAGCTGAACTTCAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGGAAAATGGGTGTATGCTTTTGTTTTGTGTTCGTGTTTCTAGATTGAGTTAAGATAAGAAAAATTTGGGAGAGGAGAGACAGGAAATGACGATTAATATTGAGTTAGAGAGGAGGAGGACAGAGAAAGAAGACCAGGAGCAGATGGAGAAAATGAAGAAGGAGCACACGCCATAAATATATGTCAAAAGAGTCAAATTATTGATGAGAAGACCAGAGGGAATCATATTACATGACCATTAAATTTTAAAATTTGTTTTCGCGAAAAAAGTCAATTTTAAAATTTCAAATGATTTTTAGTAGGTAGAACTAGACTACGAATTACCGTAAAAGCCGTAGAGCCCCCACACTATCAAACTTGAGCCCAATTATCTCGGTTCCTATACAAGATATCAAAAATGTGACAACTGATAAAATGTTTCTGGTATTATGATAAACAAATTATCAGTTGACAACTTTTTGATATCATTTGACAGGAACGGAGGTAAATTGGATCAAAATTAAAAAGTTTGGATGCTCTTCTAGAGGTATTACGGTAGCTGAACTTCATAAAAGTGAGTTTTTTAGGTTGTCAAACGGGCTCGGGTAATAGGTCAATCGAATTCCAAACTCTCCAGTTTTGTAATTTTGCACTTTTTTAAATTTGTTTTTTTTAGAATTTACAATGTTAGAATTTTCTAACATTTGGAAATTTTCGAAAATTTACATTTTCTGAATTCAAAACTTTTCGGAATTTTTGAATTAAAAAAAGCGTTTACACAAACTTCCCAAGTTTTTAAAAGTTCGAAATTCCAGATTCCTGAATTTCAGAATTTTTGATTTTTTGAGATATTGATTTTCAGATGTTCAATTTTTTGAATTATTGCAGTTTTACTCTAATTGCCCTTCTGTTACAGGTTCTACGGTATGTCCGAATGTCCAAAGCGAATAGAATTGAAAAAATCACCATGAATAGGACACCTTTGCTGGTTACTGTATGAGCCGATTTCCAAAAAAATTC</canonical>
            <polymorphic>GTGGAAAATGGGTGTATGCTTTTGTTTTGTGTTCGTGTTTCTAGATTGAGTTAAGATAAGAAAAATTTGGGAGAGGAGAGACAGGAAATGACGATTAATATTGAGTTAGAGAGGAGGAGGACAGAGAAAGAAGACCAGGAGCAGATGGAGAAAATGAAGAAGGAGCACACGCCATAAATATATGTCAAAAGAGTCAAATTATTGATGAGAAGACCAGAGGGAATCATATTACATGACCATTAAATTTTAAAATTTGTTTTCGCGAAAAAAGTCAATTTTAAAATTTCAAATGATTTTTAGTAGGTAGAACTAGACTACGAATTACCGTAAAAGCCGTAGAGCCCCCACACTATCAAACTTGAGCCCAATTATCTCGGTTCCTATACAAGATATCAAAAATGTGACAACTGATAAAATGTTTCTGGTATTATGATAAACAAATTATCAGTTGACAACTTTTTGATATCATTTGACAGGAACGGAGGTAAATTGGATCAAAMTTAAAAAGTTTGGATGCTCTTCTAGAGGTATTACGGTAGCTGAACTTCATAAAAGTGAGTTTTTTAGGTTGTCAAACGGGCTCGGGTAATAGGTCAATCGAATTCCAAACTCTCCAGTTTTGTAATTTTGCACTTTTTTAAATTTGTTTTTTTTAGAATTTACAATGTTAGAATTTTCTAACATTTGGAAATTTTCGAAAATTTACATTTTCTGAATTCAAAACTTTTCGGAATTTTTGAATTAAAAAAAGCGTTTACACAAACTTCCCAAGTTTTTAAAAGTTCGAAATTCCAGATTCCTGAATTTCAGAATTTTTGATTTTTTGAGATATTGATTTTCAGATGTTCAATTTTTTGAATTATTGCAGTTTTACTCTAATTGCCCTTCTGTTACAGGTTCTACGGTATGTCCGAATGTCCAAAGCGAATAGAATTGAAAAAATCACCATGAATAGGACACCTTTGCTGGTTACTGTATGAGCCGATTTCCAAAAAAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>133 102 73 64 63 54 48 48 47 46 38 38 23 23 20 18 17 17 16 15 15 15 11 10 9 8 8 8 8 5</canonical_bands>
                <polymorphic_bands>133 113 73 64 63 54 48 48 47 46 38 38 23 23 20 18 17 17 16 15 15 15 10 9 8 8 8 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTTCAAATGATTTTTAGTAGG</pcr_primer_p1>
		<pcr_primer_p2>GCAAAATTACAAAACTGGAGA</pcr_primer_p2>
		<pcr_amplicon_size>352</pcr_amplicon_size>
		<canonical_amplicon>AAAATTTCAAATGATTTTTAGTAGGTAGAACTAGACTACGAATTACCGTAAAAGCCGTAGAGCCCCCACACTATCAAACTTGAGCCCAATTATCTCGGTTCCTATACAAGATATCAAAAATGTGACAACTGATAAAATGTTTCTGGTATTATGATAAACAAATTATCAGTTGACAACTTTTTGATATCATTTGACAGGAACGGAGGTAAATTGGATCAAAATTAAAAAGTTTGGATGCTCTTCTAGAGGTATTACGGTAGCTGAACTTCATAAAAGTGAGTTTTTTAGGTTGTCAAACGGGCTCGGGTAATAGGTCAATCGAATTCCAAACTCTCCAGTTTTGTAATTTTGC</canonical_amplicon>
		<polymorphic_amplicon>AAAATTTCAAATGATTTTTAGTAGGTAGAACTAGACTACGAATTACCGTAAAAGCCGTAGAGCCCCCACACTATCAAACTTGAGCCCAATTATCTCGGTTCCTATACAAGATATCAAAAATGTGACAACTGATAAAATGTTTCTGGTATTATGATAAACAAATTATCAGTTGACAACTTTTTGATATCATTTGACAGGAACGGAGGTAAATTGGATCAAAMTTAAAAAGTTTGGATGCTCTTCTAGAGGTATTACGGTAGCTGAACTTCATAAAAGTGAGTTTTTTAGGTTGTCAAACGGGCTCGGGTAATAGGTCAATCGAATTCCAAACTCTCCAGTTTTGTAATTTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25662</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>316887</contig_pos>
        <strand>+</strand>
        <context>TAGGTCAATC[A/G]AATTCCAAAY</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAAAGTGAGTTTTTTAGGTTGTCAAACGGGCTCGGGTAATAGGTCAATC</left_flank>
        <right_flank>AATTCCAAACTCTCCAGTTTTGTAATTTTGCACTTTTTTAAATTTGTTTT</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAGTTAGAGAGGAGGAGGACAGAGAAAGAAGACCAGGAGCAGATGGAGAAAATGAAGAAGGAGCACACGCCATAAATATATGTCAAAAGAGTCAAATTATTGATGAGAAGACCAGAGGGAATCATATTACATGACCATTAAATTTTAAAATTTGTTTTCGCGAAAAAAGTCAATTTTAAAATTTCAAATGATTTTTAGTAGGTAGAACTAGACTACGAATTACCGTAAAAGCCGTAGAGCCCCCACACTATCAAACTTGAGCCCAATTATCTCGGTTCCTATACAAGATATCAAAAATGTGACAACTGATAAAATGTTTCTGGTATTATGATAAACAAATTATCAGTTGACAACTTTTTGATATCATTTGACAGGAACGGAGGTAAATTGGATCAAAATTAAAAAGTTTGGATGCTCTTCTAGAGGTATTACGGTAGCTGAACTTCATAAAAGTGAGTTTTTTAGGTTGTCAAACGGGCTCGGGTAATAGGTCAATCGAATTCCAAACTCTCCAGTTTTGTAATTTTGCACTTTTTTAAATTTGTTTTTTTTAGAATTTACAATGTTAGAATTTTCTAACATTTGGAAATTTTCGAAAATTTACATTTTCTGAATTCAAAACTTTTCGGAATTTTTGAATTAAAAAAAGCGTTTACACAAACTTCCCAAGTTTTTAAAAGTTCGAAATTCCAGATTCCTGAATTTCAGAATTTTTGATTTTTTGAGATATTGATTTTCAGATGTTCAATTTTTTGAATTATTGCAGTTTTACTCTAATTGCCCTTCTGTTACAGGTTCTACGGTATGTCCGAATGTCCAAAGCGAATAGAATTGAAAAAATCACCATGAATAGGACACCTTTGCTGGTTACTGTATGAGCCGATTTCCAAAAAAATTCCAAAATCGAAAAAGTTGATGACTACGGTATTCTTAATAATTTCAAACAGAAGCATTCACCATCCTCAAAACTAAAACAGTAAACAAGAGTCTGGTGACAG</canonical>
            <polymorphic>TTGAGTTAGAGAGGAGGAGGACAGAGAAAGAAGACCAGGAGCAGATGGAGAAAATGAAGAAGGAGCACACGCCATAAATATATGTCAAAAGAGTCAAATTATTGATGAGAAGACCAGAGGGAATCATATTACATGACCATTAAATTTTAAAATTTGTTTTCGCGAAAAAAGTCAATTTTAAAATTTCAAATGATTTTTAGTAGGTAGAACTAGACTACGAATTACCGTAAAAGCCGTAGAGCCCCCACACTATCAAACTTGAGCCCAATTATCTCGGTTCCTATACAAGATATCAAAAATGTGACAACTGATAAAATGTTTCTGGTATTATGATAAACAAATTATCAGTTGACAACTTTTTGATATCATTTGACAGGAACGGAGGTAAATTGGATCAAAATTAAAAAGTTTGGATGCTCTTCTAGAGGTATTACGGTAGCTGAACTTCATAAAAGTGAGTTTTTTAGGTTGTCAAACGGGCTCGGGTAATAGGTCAATCRAATTCCAAACTCTCCAGTTTTGTAATTTTGCACTTTTTTAAATTTGTTTTTTTTAGAATTTACAATGTTAGAATTTTCTAACATTTGGAAATTTTCGAAAATTTACATTTTCTGAATTCAAAACTTTTCGGAATTTTTGAATTAAAAAAAGCGTTTACACAAACTTCCCAAGTTTTTAAAAGTTCGAAATTCCAGATTCCTGAATTTCAGAATTTTTGATTTTTTGAGATATTGATTTTCAGATGTTCAATTTTTTGAATTATTGCAGTTTTACTCTAATTGCCCTTCTGTTACAGGTTCTACGGTATGTCCGAATGTCCAAAGCGAATAGAATTGAAAAAATCACCATGAATAGGACACCTTTGCTGGTTACTGTATGAGCCGATTTCCAAAAAAATTCCAAAATCGAAAAAGTTGATGACTACGGTATTCTTAATAATTTCAAACAGAAGCATTCACCATCCTCAAAACTAAAACAGTAAACAAGAGTCTGGTGACAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>319 185 142 105 56 40 31 18 17 16 15 15 15 10 8 8</canonical_bands>
                <polymorphic_bands>359 185 142 105 56 31 18 17 16 15 15 15 10 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>500 386 114</canonical_bands>
                <polymorphic_bands>614 386</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 222 97 93 89</canonical_bands>
                <polymorphic_bands>596 222 93 89</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTGAACTTCATAAAAGTGAGTT</pcr_primer_p1>
		<pcr_primer_p2>TTAATTCAAAAATTCCGAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>207</pcr_amplicon_size>
		<canonical_amplicon>GCTGAACTTCATAAAAGTGAGTTTTTTAGGTTGTCAAACGGGCTCGGGTAATAGGTCAATCGAATTCCAAACTCTCCAGTTTTGTAATTTTGCACTTTTTTAAATTTGTTTTTTTTAGAATTTACAATGTTAGAATTTTCTAACATTTGGAAATTTTCGAAAATTTACATTTTCTGAATTCAAAACTTTTCGGAATTTTTGAATTAA</canonical_amplicon>
		<polymorphic_amplicon>GCTGAACTTCATAAAAGTGAGTTTTTTAGGTTGTCAAACGGGCTCGGGTAATAGGTCAATCRAATTCCAAACTCTCCAGTTTTGTAATTTTGCACTTTTTTAAATTTGTTTTTTTTAGAATTTACAATGTTAGAATTTTCTAACATTTGGAAATTTTCGAAAATTTACATTTTCTGAATTCAAAACTTTTCGGAATTTTTGAATTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25663</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>316897</contig_pos>
        <strand>+</strand>
        <context>RAATTCCAAA[C/T]TCTCCAGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTAGGTTGTCAAACGGGCTCGGGTAATAGGTCAATCGAATTCCAAA</left_flank>
        <right_flank>TCTCCAGTTTTGTAATTTTGCACTTTTTTAAATTTGTTTTTTTTAGAATT</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGAGGAGGACAGAGAAAGAAGACCAGGAGCAGATGGAGAAAATGAAGAAGGAGCACACGCCATAAATATATGTCAAAAGAGTCAAATTATTGATGAGAAGACCAGAGGGAATCATATTACATGACCATTAAATTTTAAAATTTGTTTTCGCGAAAAAAGTCAATTTTAAAATTTCAAATGATTTTTAGTAGGTAGAACTAGACTACGAATTACCGTAAAAGCCGTAGAGCCCCCACACTATCAAACTTGAGCCCAATTATCTCGGTTCCTATACAAGATATCAAAAATGTGACAACTGATAAAATGTTTCTGGTATTATGATAAACAAATTATCAGTTGACAACTTTTTGATATCATTTGACAGGAACGGAGGTAAATTGGATCAAAATTAAAAAGTTTGGATGCTCTTCTAGAGGTATTACGGTAGCTGAACTTCATAAAAGTGAGTTTTTTAGGTTGTCAAACGGGCTCGGGTAATAGGTCAATCGAATTCCAAACTCTCCAGTTTTGTAATTTTGCACTTTTTTAAATTTGTTTTTTTTAGAATTTACAATGTTAGAATTTTCTAACATTTGGAAATTTTCGAAAATTTACATTTTCTGAATTCAAAACTTTTCGGAATTTTTGAATTAAAAAAAGCGTTTACACAAACTTCCCAAGTTTTTAAAAGTTCGAAATTCCAGATTCCTGAATTTCAGAATTTTTGATTTTTTGAGATATTGATTTTCAGATGTTCAATTTTTTGAATTATTGCAGTTTTACTCTAATTGCCCTTCTGTTACAGGTTCTACGGTATGTCCGAATGTCCAAAGCGAATAGAATTGAAAAAATCACCATGAATAGGACACCTTTGCTGGTTACTGTATGAGCCGATTTCCAAAAAAATTCCAAAATCGAAAAAGTTGATGACTACGGTATTCTTAATAATTTCAAACAGAAGCATTCACCATCCTCAAAACTAAAACAGTAAACAAGAGTCTGGTGACAGACGGTACCAA</canonical>
            <polymorphic>GAGGAGGAGGACAGAGAAAGAAGACCAGGAGCAGATGGAGAAAATGAAGAAGGAGCACACGCCATAAATATATGTCAAAAGAGTCAAATTATTGATGAGAAGACCAGAGGGAATCATATTACATGACCATTAAATTTTAAAATTTGTTTTCGCGAAAAAAGTCAATTTTAAAATTTCAAATGATTTTTAGTAGGTAGAACTAGACTACGAATTACCGTAAAAGCCGTAGAGCCCCCACACTATCAAACTTGAGCCCAATTATCTCGGTTCCTATACAAGATATCAAAAATGTGACAACTGATAAAATGTTTCTGGTATTATGATAAACAAATTATCAGTTGACAACTTTTTGATATCATTTGACAGGAACGGAGGTAAATTGGATCAAAATTAAAAAGTTTGGATGCTCTTCTAGAGGTATTACGGTAGCTGAACTTCATAAAAGTGAGTTTTTTAGGTTGTCAAACGGGCTCGGGTAATAGGTCAATCGAATTCCAAAYTCTCCAGTTTTGTAATTTTGCACTTTTTTAAATTTGTTTTTTTTAGAATTTACAATGTTAGAATTTTCTAACATTTGGAAATTTTCGAAAATTTACATTTTCTGAATTCAAAACTTTTCGGAATTTTTGAATTAAAAAAAGCGTTTACACAAACTTCCCAAGTTTTTAAAAGTTCGAAATTCCAGATTCCTGAATTTCAGAATTTTTGATTTTTTGAGATATTGATTTTCAGATGTTCAATTTTTTGAATTATTGCAGTTTTACTCTAATTGCCCTTCTGTTACAGGTTCTACGGTATGTCCGAATGTCCAAAGCGAATAGAATTGAAAAAATCACCATGAATAGGACACCTTTGCTGGTTACTGTATGAGCCGATTTCCAAAAAAATTCCAAAATCGAAAAAGTTGATGACTACGGTATTCTTAATAATTTCAAACAGAAGCATTCACCATCCTCAAAACTAAAACAGTAAACAAGAGTCTGGTGACAGACGGTACCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTGAACTTCATAAAAGTGAGTT</pcr_primer_p1>
		<pcr_primer_p2>TTAATTCAAAAATTCCGAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>207</pcr_amplicon_size>
		<canonical_amplicon>GCTGAACTTCATAAAAGTGAGTTTTTTAGGTTGTCAAACGGGCTCGGGTAATAGGTCAATCGAATTCCAAACTCTCCAGTTTTGTAATTTTGCACTTTTTTAAATTTGTTTTTTTTAGAATTTACAATGTTAGAATTTTCTAACATTTGGAAATTTTCGAAAATTTACATTTTCTGAATTCAAAACTTTTCGGAATTTTTGAATTAA</canonical_amplicon>
		<polymorphic_amplicon>GCTGAACTTCATAAAAGTGAGTTTTTTAGGTTGTCAAACGGGCTCGGGTAATAGGTCAATCGAATTCCAAAYTCTCCAGTTTTGTAATTTTGCACTTTTTTAAATTTGTTTTTTTTAGAATTTACAATGTTAGAATTTTCTAACATTTGGAAATTTTCGAAAATTTACATTTTCTGAATTCAAAACTTTTCGGAATTTTTGAATTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25664</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>360858</contig_pos>
        <strand>+</strand>
        <context>CACCTCCGAA[G/T]GCGACTTTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCCAGTCTCGATGTCGGCAAGTTTCACATTGTGATCCACACCTCCGAA</left_flank>
        <right_flank>GCGACTTTGTTGTAACCCTAAAACGATACACATGTGAAATGCGTTATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATCAGTTCGGTGCCATCCGCATCTTTCTCGCGGTGACACTTGAAAGCATACTTTCTCTTCACTTGGTCGCTGTTCTGCTCCACGTACTCAACAGCAACACGGCCTTCGATCGAGGAGACAACGAACGCTTCTCCAGTTGGGAAGAATTGAACAGATCGTGTCTGATATTTGAGCGGACTGTCACGAACTTGCACTGGCTCTCTGAGTTTGCGACTATCGAACATGTAGATTTTCCGATCTTTTGTTCCAACAAGAACCATGTGCTTGAGAACATCCATGGCGTAAACACTGCTGGACACATTCACGGAATCAACTGCACCATTTCCATAGCTTCGTGCATCCCACAGTTTCACGGAAGAATCCCATCCACCAGAGACGATGAGACTGCTAATGGGGTTGAACTCCAGACAGCGAACTGCCAATGCATGCGATCCGAGCTGTGTTCCATTTCCAGTCTCGATGTCGGCAAGTTTCACATTGTGATCCACACCTCCGAAGGCGACTTTGTTGTAACCCTAAAACGATACACATGTGAAATGCGTTATTTTATCGAATAAAACTTACAGCAAATGTACATGTCAGTAGAGGCTTTCCGTGTGTGAAAACGAGTTTTTCAGAAAACTCTCCGAGCTTTCCTACTTCGTATACGCGGCATGTTCCATCCCAACCTGACGCCACGAGCAATTTTGATCCTCCGCCGTCCTTTTGAAACTAAAAACGAGACGTATCAGACAGACATTGAATGCGAAACGATACCTGGACTTTAGAAATTTGAACAAATGGTGGGAACGGCACCCGAAACTCGTTTGGAGCAGCGACAATTGTGGCTGCTTGGTATGACATCTGCAAGAAAAATTATTTACTGCAACTCTAGGTTATAAATAAATTGAGAATAGGGAAAAGCAGTTCTAAAATAAGCGAACTATTAAAAGAATGAATAAATGAGTATAGGTTAAACTGACTCCGAAAGAATGAATAGAAACGGCAATAGATAACAG</canonical>
            <polymorphic>GAATCAGTTCGGTGCCATCCGCATCTTTCTCGCGGTGACACTTGAAAGCATACTTTCTCTTCACTTGGTCGCTGTTCTGCTCCACGTACTCAACAGCAACACGGCCTTCGATCGAGGAGACAACGAACGCTTCTCCAGTTGGGAAGAATTGAACAGATCGTGTCTGATATTTGAGCGGACTGTCACGAACTTGCACTGGCTCTCTGAGTTTGCGACTATCGAACATGTAGATTTTCCGATCTTTTGTTCCAACAAGAACCATGTGCTTGAGAACATCCATGGCGTAAACACTGCTGGACACATTCACGGAATCAACTGCACCATTTCCATAGCTTCGTGCATCCCACAGTTTCACGGAAGAATCCCATCCACCAGAGACGATGAGACTGCTAATGGGGTTGAACTCCAGACAGCGAACTGCCAATGCATGCGATCCGAGCTGTGTTCCATTTCCAGTCTCGATGTCGGCAAGTTTCACATTGTGATCCACACCTCCGAAKGCGACTTTGTTGTAACCCTAAAACGATACACATGTGAAATGCGTTATTTTATCGAATAAAACTTACAGCAAATGTACATGTCAGTAGAGGCTTTCCGTGTGTGAAAACGAGTTTTTCAGAAAACTCTCCGAGCTTTCCTACTTCGTATACGCGGCATGTTCCATCCCAACCTGACGCCACGAGCAATTTTGATCCTCCGCCGTCCTTTTGAAACTAAAAACGAGACGTATCAGACAGACATTGAATGCGAAACGATACCTGGACTTTAGAAATTTGAACAAATGGTGGGAACGGCACCCGAAACTCGTTTGGAGCAGCGACAATTGTGGCTGCTTGGTATGACATCTGCAAGAAAAATTATTTACTGCAACTCTAGGTTATAAATAAATTGAGAATAGGGAAAAGCAGTTCTAAAATAAGCGAACTATTAAAAGAATGAATAAATGAGTATAGGTTAAACTGACTCCGAAAGAATGAATAGAAACGGCAATAGATAACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAGTTTCACGGAAGAATC</pcr_primer_p1>
		<pcr_primer_p2>TGACATGTACATTTGCTGTAAGT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CACAGTTTCACGGAAGAATCCCATCCACCAGAGACGATGAGACTGCTAATGGGGTTGAACTCCAGACAGCGAACTGCCAATGCATGCGATCCGAGCTGTGTTCCATTTCCAGTCTCGATGTCGGCAAGTTTCACATTGTGATCCACACCTCCGAAGGCGACTTTGTTGTAACCCTAAAACGATACACATGTGAAATGCGTTATTTTATCGAATAAAACTTACAGCAAATGTACATGTCA</canonical_amplicon>
		<polymorphic_amplicon>CACAGTTTCACGGAAGAATCCCATCCACCAGAGACGATGAGACTGCTAATGGGGTTGAACTCCAGACAGCGAACTGCCAATGCATGCGATCCGAGCTGTGTTCCATTTCCAGTCTCGATGTCGGCAAGTTTCACATTGTGATCCACACCTCCGAAKGCGACTTTGTTGTAACCCTAAAACGATACACATGTGAAATGCGTTATTTTATCGAATAAAACTTACAGCAAATGTACATGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25665</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>363217</contig_pos>
        <strand>+</strand>
        <context>CAAGGCATTG[A/T]AGGAGAAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAGATCTGGACTCCCAACACCGGAAGAAGCCGAGCAAATCAAGGCATTG</left_flank>
        <right_flank>AGGAGAAATACGCAAAGTTGTACCGAAAAAAGTAGAGGGCACTTTTCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAGAGAAACTCGCCCCAACTGTAGAAAAGGGCTCATTGATTGCTCCCGGAACTTTGGACAAAGCACCCATGTGGTTGTCCCCACGTCTTCTCACAATCCGACGCAAGAAAATGAAGAAGCATAAGAGACGAAGGCGATATGATCGAGACTTTTTCAAATACCAAAAATATCATAGAGAGAAGAAACTGAAGTCAGAAAGAGAGTTCCAGAAGAGAATGAAGTCTTTGCTAACGGAGTTAGAAGCATTCGATCCAGAGAAATATGTGAAAGACACCATCAAAATGGCTAATAAGGAATGGCAGGATGAGTTGGCGCCGACTGGAAGAAAACTTTATCCACATTGGAGCAGATTCATGAGTTTGGAGCAATTGTATGGATTACCAAAGAGCGAGTACATTGACAAGAGGTAAGCTTTGGCACTTCTTCACTATGTAAATGAACGTTTTTTTAGATCTGGACTCCCAACACCGGAAGAAGCCGAGCAAATCAAGGCATTGAAGGAGAAATACGCAAAGTTGTACCGAAAAAAGTAGAGGGCACTTTTCAAATTTTTTTTGTATAGGGTAGATTGTTTTTTGTTATTTTTCTGTTTTGTTTTCGAAAAAAAAGTTTGAAATTATTTGAAAATATTGGACTATTCTATCTAAAGAGGAGAATACAGATCACATTTGCATCATANNNNNNNNNNATGAGTTCTTATCCATACTGGTTTTCAGATTGCTTTCCAGATTTTTCACTTATTTTCAGATTTTGATTTTCAGGAATTGTTAAAAATAAATAACGTAGAACGTAGTTATCCGGATAAAAAAATTGAAATGAAATTTCAGAAATGTGGCTTCGAATGAATGCTCTGGAATATATGAAAACTGCCTTTCATAGAAGATTGTTCATGAAAACTATAGGAAAGTTGCATTGAAGTTTTCTTTTGAATTCCTGTCTGATCATCAATCTTTTTCTCTTTTTTTAACAAACACACATTTTTTCCAATCGATTTTCAT</canonical>
            <polymorphic>TTTAGAGAAACTCGCCCCAACTGTAGAAAAGGGCTCATTGATTGCTCCCGGAACTTTGGACAAAGCACCCATGTGGTTGTCCCCACGTCTTCTCACAATCCGACGCAAGAAAATGAAGAAGCATAAGAGACGAAGGCGATATGATCGAGACTTTTTCAAATACCAAAAATATCATAGAGAGAAGAAACTGAAGTCAGAAAGAGAGTTCCAGAAGAGAATGAAGTCTTTGCTAACGGAGTTAGAAGCATTCGATCCAGAGAAATATGTGAAAGACACCATCAAAATGGCTAATAAGGAATGGCAGGATGAGTTGGCGCCGACTGGAAGAAAACTTTATCCACATTGGAGCAGATTCATGAGTTTGGAGCAATTGTATGGATTACCAAAGAGCGAGTACATTGACAAGAGGTAAGCTTTGGCACTTCTTCACTATGTAAATGAACGTTTTTTTAGATCTGGACTCCCAACACCGGAAGAAGCCGAGCAAATCAAGGCATTGWAGGAGAAATACGCAAAGTTGTACCGAAAAAAGTAGAGGGCACTTTTCAAATTTTTTTTGTATAGGGTAGATTGTTTTTTGTTATTTTTCTGTTTTGTTTTCGAAAAAAAAGTTTGAAATTATTTGAAAATATTGGACTATTCTATCTAAAGAGGAGAATACAGATCACATTTGCATCATANNNNNNNNNNATGAGTTCTTATCCATACTGGTTTTCAGATTGCTTTCCAGATTTTTCACTTATTTTCAGATTTTGATTTTCAGGAATTGTTAAAAATAAATAACGTAGAACGTAGTTATCCGGATAAAAAAATTGAAATGAAATTTCAGAAATGTGGCTTCGAATGAATGCTCTGGAATATATGAAAACTGCCTTTCATAGAAGATTGTTCATGAAAACTATAGGAAAGTTGCATTGAAGTTTTCTTTTGAATTCCTGTCTGATCATCAATCTTTTTCTCTTTTTTTAACAAACACACATTTTTTCCAATCGATTTTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCACTATGTAAATGAACGTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAAATGTGATCTGTATTCTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTCACTATGTAAATGAACGTTTTTTTAGATCTGGACTCCCAACACCGGAAGAAGCCGAGCAAATCAAGGCATTGAAGGAGAAATACGCAAAGTTGTACCGAAAAAAGTAGAGGGCACTTTTCAAATTTTTTTTGTATAGGGTAGATTGTTTTTTGTTATTTTTCTGTTTTGTTTTCGAAAAAAAAGTTTGAAATTATTTGAAAATATTGGACTATTCTATCTAAAGAGGAGAATACAGATCACATTTG</canonical_amplicon>
		<polymorphic_amplicon>CTTCACTATGTAAATGAACGTTTTTTTAGATCTGGACTCCCAACACCGGAAGAAGCCGAGCAAATCAAGGCATTGWAGGAGAAATACGCAAAGTTGTACCGAAAAAAGTAGAGGGCACTTTTCAAATTTTTTTTGTATAGGGTAGATTGTTTTTTGTTATTTTTCTGTTTTGTTTTCGAAAAAAAAGTTTGAAATTATTTGAAAATATTGGACTATTCTATCTAAAGAGGAGAATACAGATCACATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25666</snp_id>
        <super_contig>c001601144.Contig5</super_contig>
        <contig_pos>363346</contig_pos>
        <strand>+</strand>
        <context>TTATTTGAAA[A/C]TATTGGACTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGTTATTTTTCTGTTTTGTTTTCGAAAAAAAAGTTTGAAATTATTTGAAA</left_flank>
        <right_flank>TATTGGACTATTCTATCTAAAGAGGAGAATACAGATCACATTTGCATCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGAAGGCGATATGATCGAGACTTTTTCAAATACCAAAAATATCATAGAGAGAAGAAACTGAAGTCAGAAAGAGAGTTCCAGAAGAGAATGAAGTCTTTGCTAACGGAGTTAGAAGCATTCGATCCAGAGAAATATGTGAAAGACACCATCAAAATGGCTAATAAGGAATGGCAGGATGAGTTGGCGCCGACTGGAAGAAAACTTTATCCACATTGGAGCAGATTCATGAGTTTGGAGCAATTGTATGGATTACCAAAGAGCGAGTACATTGACAAGAGGTAAGCTTTGGCACTTCTTCACTATGTAAATGAACGTTTTTTTAGATCTGGACTCCCAACACCGGAAGAAGCCGAGCAAATCAAGGCATTGAAGGAGAAATACGCAAAGTTGTACCGAAAAAAGTAGAGGGCACTTTTCAAATTTTTTTTGTATAGGGTAGATTGTTTTTTGTTATTTTTCTGTTTTGTTTTCGAAAAAAAAGTTTGAAATTATTTGAAAATATTGGACTATTCTATCTAAAGAGGAGAATACAGATCACATTTGCATCATANNNNNNNNNNATGAGTTCTTATCCATACTGGTTTTCAGATTGCTTTCCAGATTTTTCACTTATTTTCAGATTTTGATTTTCAGGAATTGTTAAAAATAAATAACGTAGAACGTAGTTATCCGGATAAAAAAATTGAAATGAAATTTCAGAAATGTGGCTTCGAATGAATGCTCTGGAATATATGAAAACTGCCTTTCATAGAAGATTGTTCATGAAAACTATAGGAAAGTTGCATTGAAGTTTTCTTTTGAATTCCTGTCTGATCATCAATCTTTTTCTCTTTTTTTAACAAACACACATTTTTTCCAATCGATTTTCATGGAAAAATAATAATAAATTTATTTGAATACCGTTCAACCTGTAACAGAAGGGTCCGCACACTGTAAACTTTGAGCCAATTTATCCAATTTCCTGTACAAGATATCAAAAAGTAGTTAACTGACAAAACA</canonical>
            <polymorphic>ACGAAGGCGATATGATCGAGACTTTTTCAAATACCAAAAATATCATAGAGAGAAGAAACTGAAGTCAGAAAGAGAGTTCCAGAAGAGAATGAAGTCTTTGCTAACGGAGTTAGAAGCATTCGATCCAGAGAAATATGTGAAAGACACCATCAAAATGGCTAATAAGGAATGGCAGGATGAGTTGGCGCCGACTGGAAGAAAACTTTATCCACATTGGAGCAGATTCATGAGTTTGGAGCAATTGTATGGATTACCAAAGAGCGAGTACATTGACAAGAGGTAAGCTTTGGCACTTCTTCACTATGTAAATGAACGTTTTTTTAGATCTGGACTCCCAACACCGGAAGAAGCCGAGCAAATCAAGGCATTGAAGGAGAAATACGCAAAGTTGTACCGAAAAAAGTAGAGGGCACTTTTCAAATTTTTTTTGTATAGGGTAGATTGTTTTTTGTTATTTTTCTGTTTTGTTTTCGAAAAAAAAGTTTGAAATTATTTGAAAMTATTGGACTATTCTATCTAAAGAGGAGAATACAGATCACATTTGCATCATANNNNNNNNNNATGAGTTCTTATCCATACTGGTTTTCAGATTGCTTTCCAGATTTTTCACTTATTTTCAGATTTTGATTTTCAGGAATTGTTAAAAATAAATAACGTAGAACGTAGTTATCCGGATAAAAAAATTGAAATGAAATTTCAGAAATGTGGCTTCGAATGAATGCTCTGGAATATATGAAAACTGCCTTTCATAGAAGATTGTTCATGAAAACTATAGGAAAGTTGCATTGAAGTTTTCTTTTGAATTCCTGTCTGATCATCAATCTTTTTCTCTTTTTTTAACAAACACACATTTTTTCCAATCGATTTTCATGGAAAAATAATAATAAATTTATTTGAATACCGTTCAACCTGTAACAGAAGGGTCCGCACACTGTAAACTTTGAGCCAATTTATCCAATTTCCTGTACAAGATATCAAAAAGTAGTTAACTGACAAAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGTAGAGGGCACTTTTCA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTAACAATTCCTGAAAATCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAGTAGAGGGCACTTTTCAAATTTTTTTTGTATAGGGTAGATTGTTTTTTGTTATTTTTCTGTTTTGTTTTCGAAAAAAAAGTTTGAAATTATTTGAAAATATTGGACTATTCTATCTAAAGAGGAGAATACAGATCACATTTGCATCATANNNNNNNNNNATGAGTTCTTATCCATACTGGTTTTCAGATTGCTTTCCAGATTTTTCACTTATTTTCAGATTTTGATTTTCAGGAATTGTTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAGTAGAGGGCACTTTTCAAATTTTTTTTGTATAGGGTAGATTGTTTTTTGTTATTTTTCTGTTTTGTTTTCGAAAAAAAAGTTTGAAATTATTTGAAAMTATTGGACTATTCTATCTAAAGAGGAGAATACAGATCACATTTGCATCATANNNNNNNNNNATGAGTTCTTATCCATACTGGTTTTCAGATTGCTTTCCAGATTTTTCACTTATTTTCAGATTTTGATTTTCAGGAATTGTTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25668</snp_id>
        <super_contig>c001601152.Contig1</super_contig>
        <contig_pos>474</contig_pos>
        <strand>+</strand>
        <context>TACAGAATAT[C/T]AACTATTATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGATCACAAAAATCAAAGTGAAAGGAAAGGGAATCTCTGTACAGAATAT</left_flank>
        <right_flank>AACTATTATTTTTTTCATGCCGTCATTCCTTGACACCTGCAAGGTGTCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCTGAAGCATAATCGCTAGTATGATGAGACATCTGATTTAATGGAACAATCCAAAAGGTCTACCTAACACTGGACTCACTGCCCAGGTCCGACTGCTGACGCCTCAAAGACCAACAACTTATGCCACATATCCCTGCTGCAAACTCCTCAACGAAGCAAAGGATGGTTATCTCTCTTATCTCCTATGAACAGAACCCCTGACACTGGATCTCAAGCTGGACAACCGCAATTGCAGATGCCACGAAGACCCCAATCAGAGCATTTCAACTTTCAACTTCCGACCAAATTCTAACCATGGTCCACTATAAAGCCGACTGTGGACAAGTTCTGGCCAGCACCTGGCCAATATAGAACATCTTCAAAAATTCTTATTAGTCTATCACATTGAAACCAAAGTACCAACAAAATACCAACAACAAACGAGATCACAAAAATCAAAGTGAAAGGAAAGGGAATCTCTGTACAGAATATCAACTATTATTTTTTTCATGCCGTCATTCCTTGACACCTGCAAGGTGTCTGATAGCATCTGCACATTAGTGTCAATGGAAGGGCCATAGACACTACGGACCATTGATTACATACTCGTGTGGCTGGCGGTTCAAAAGGCTTGCTTGAATCGAAATTGGGTTGTTGCATTAGTGGAATTTGAAGTGGTAGTTGAGGCGGGAGTTGAGGTGGAGAGGAAGACTGAAAATTTCAGGTTAAATCGATTGATACAGTAACCTGACCTACTTTCTCCGTTGGTGGGGTGGACTCTTTCTTTGCCGCCAGCTCCACCTGTGGTACCAACAGTGGAGGGGCTGGGATTGGTGTCGTTGACTTCTCATTTGGCTTCAGAATCACTGATGGTGCAGGAGGGATCATTTTCATGTTGGCTCCATTCTGATTCATCAAATGAAAGAATGGATTTTGTTGCTTCCTAGTTACCCCATTTTCTCTCAACAAGACATATGGATGGCGAAGATACTCATGAAGTACTTCATCAGTTACTGATC</canonical>
            <polymorphic>CTTCTGAAGCATAATCGCTAGTATGATGAGACATCTGATTTAATGGAACAATCCAAAAGGTCTACCTAACACTGGACTCACTGCCCAGGTCCGACTGCTGACGCCTCAAAGACCAACAACTTATGCCACATATCCCTGCTGCAAACTCCTCAACGAAGCAAAGGATGGTTATCTCTCTTATCTCCTATGAACAGAACCCCTGACACTGGATCTCAAGCTGGACAACCGCAATTGCAGATGCCACGAAGACCCCAATCAGAGCATTTCAACTTTCAACTTCCGACCAAATTCTAACCATGGTCCACTATAAAGCCGACTGTGGACAAGTTCTGGCCAGCACCTGGCCAATATAGAACATCTTCAAAAATTCTTATTAGTCTATCACATTGAAACCAAAGTACCAACAAAATACCAACAACAAACGAGATCACAAAAATCAAAGTGAAAGGAAAGGGAATCTCTGTACAGAATATYAACTATTATTTTTTTCATGCCGTCATTCCTTGACACCTGCAAGGTGTCTGATAGCATCTGCACATTAGTGTCAATGGAAGGGCCATAGACACTACGGACCATTGATTACATACTCGTGTGGCTGGCGGTTCAAAAGGCTTGCTTGAATCGAAATTGGGTTGTTGCATTAGTGGAATTTGAAGTGGTAGTTGAGGCGGGAGTTGAGGTGGAGAGGAAGACTGAAAATTTCAGGTTAAATCGATTGATACAGTAACCTGACCTACTTTCTCCGTTGGTGGGGTGGACTCTTTCTTTGCCGCCAGCTCCACCTGTGGTACCAACAGTGGAGGGGCTGGGATTGGTGTCGTTGACTTCTCATTTGGCTTCAGAATCACTGATGGTGCAGGAGGGATCATTTTCATGTTGGCTCCATTCTGATTCATCAAATGAAAGAATGGATTTTGTTGCTTCCTAGTTACCCCATTTTCTCTCAACAAGACATATGGATGGCGAAGATACTCATGAAGTACTTCATCAGTTACTGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAAACGAGATCACAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AACTACCACTTCAAATTCCACTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AACAAACGAGATCACAAAAATCAAAGTGAAAGGAAAGGGAATCTCTGTACAGAATATYAACTATTATTTTTTTCATGCCGTCACTCCTTGACACCTGCAAGGTGTCTGATAGCATCTGCACATTAGTGTCAATGGAAGGGCCATAGACACTACGGACCATTGATTACATACTCGTGTGGCTGGCGGTTCAAAAGGCTTGCTTGAATCGAAATTGGGTTGTTGCATTAGTGGAATTTGAAGTGGTAGTT</canonical_amplicon>
		<polymorphic_amplicon>AACAAACGAGATCACAAAAATCAAAGTGAAAGGAAAGGGAATCTCTGTACAGAATATYAACTATTATTTTTTTCATGCCGTCATTCCTTGACACCTGCAAGGTGTCTGATAGCATCTGCACATTAGTGTCAATGGAAGGGCCATAGACACTACGGACCATTGATTACATACTCGTGTGGCTGGCGGTTCAAAAGGCTTGCTTGAATCGAAATTGGGTTGTTGCATTAGTGGAATTTGAAGTGGTAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25669</snp_id>
        <super_contig>c001601152.Contig1</super_contig>
        <contig_pos>15154</contig_pos>
        <strand>+</strand>
        <context>AAATTATTGA[A/T]TCCAAACGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAATAATAGCCAATATCAAACTGACCATCGAGATTGGTGAAATTATTGA</left_flank>
        <right_flank>TCCAAACGGAGGGACGAGTTTGTTATACTAAAAAATCACCTTTTCGAAGA</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATTGGGCTTTAAGATTGGTGCTCCTCCGGAATTGTACAAAAAATTGACAAGAAAAAGACGAATGAAAGCCAAAGATTCGTTGATTCGATTTTCGGAAATTACCAGCTCTATTTTTTCAAAATTCAATGAGCTTGAGCAGAATTTGGGAAGATTGGAGTTACAAGACGTTGACTTGAAGGTAATTTGTTTACCGTAAAACCTGTAATAGAAGGTCCCCCTAACCTTCAAAAGAAAGGTCAACTGATAAATGGTTTATCATAATATCACAAGCAAGTTATCAGTTGACACATTTTTGTTATCTTGCATAGAAACCAAGAAAAGGTAGTTTAAACTTAACAGTGTTGGGGCCCTTCTATTACAGGTTTTACGGTTTTTACATTTACAAAATAAGACCTCAAACTTCAGTGTGTCATTCAAAACATAAAATCTCTAATATCTTCATTCGGGGAAATAATAGCCAATATCAAACTGACCATCGAGATTGGTGAAATTATTGATTCCAAACGGAGGGACGAGTTTGTTATACTAAAAAATCACCTTTTCGAAGATGTGAGTGATGTTAACTGATGCATTTCAAATAGATGCGATTTCAGATCAATAATATCCAACTGATATACGATGGAAAACGAGATATTGAGAAAAACCTCGTCGACAGATTTATAAAGTGCTGATTTCATTGAAGTTCCTTTTGAATTTCATTGTTATTTTGACTTCTTTACATTTTCTTTTTCTGAATAATTGTTTCTAAGCTCTCGAATTCTTCTGTGTTTGATATACTGGTTCATCAACCTTTTACCTTATTTTTAGTTATTCAGATTAGTTCTATTTCTTTCCTTTAGATTTCTTGAGAGTTATGTCATCACCACCTCAAAACAGAAAAATCATTCGAGAAGATGCAGAACTGGAGGTTGAGCAAAGCAGAGAATTGGAAATCAAGATTCGAGAACTAGAACTTTTAGAGAAGGAAAAAGCTGCAGAACTATTTGAAGAGAGGGAAA</canonical>
            <polymorphic>TTATTGGGCTTTAAGATTGGTGCTCCTCCGGAATTGTACAAAAAATTGACAAGAAAAAGACGAATGAAAGCCAAAGATTCGTTGATTCGATTTTCGGAAATTACCAGCTCTATTTTTTCAAAATTCAATGAGCTTGAGCAGAATTTGGGAAGATTGGAGTTACAAGACGTTGACTTGAAGGTAATTTGTTTACCGTAAAACCTGTAATAGAAGGTCCCCCTAACCTTCAAAAGAAAGGTCAACTGATAAATGGTTTATCATAATATCACAAGCAAGTTATCAGTTGACACATTTTTGTTATCTTGCATAGAAACCAAGAAAAGGTAGTTTAAACTTAACAGTGTTGGGGCCCTTCTATTACAGGTTTTACGGTTTTTACATTTACAAAATAAGACCTCAAACTTCAGTGTGTCATTCAAAACATAAAATCTCTAATATCTTCATTCGGGGAAATAATAGCCAATATCAAACTGACCATCGAGATTGGTGAAATTATTGAWTCCAAACGGAGGGACGAGTTTGTTATACTAAAAAATCACCTTTTCGAAGATGTGAGTGATGTTAACTGATGCATTTCAAATAGATGCGATTTCAGATCAATAATATCCAACTGATATACGATGGAAAACGAGATATTGAGAAAAACCTCGTCGACAGATTTATAAAGTGCTGATTTCATTGAAGTTCCTTTTGAATTTCATTGTTATTTTGACTTCTTTACATTTTCTTTTTCTGAATAATTGTTTCTAAGCTCTCGAATTCTTCTGTGTTTGATATACTGGTTCATCAACCTTTTACCTTATTTTTAGTTATTCAGATTAGTTCTATTTCTTTCCTTTAGATTTCTTGAGAGTTATGTCATCACCACCTCAAAACAGAAAAATCATTCGAGAAGATGCAGAACTGGAGGTTGAGCAAAGCAGAGAATTGGAAATCAAGATTCGAGAACTAGAACTTTTAGAGAAGGAAAAAGCTGCAGAACTATTTGAAGAGAGGGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>441 414 76 61 8</canonical_bands>
                <polymorphic_bands>855 76 61 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATAAGACCTCAAACTTCAGTG</pcr_primer_p1>
		<pcr_primer_p2>TATCTCGTTTTCCATCGTATATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATAAGACCTCAAACTTCAGTGTGTCATTCAAAACATAAAATCTCTAATATCTTCATTCGGGGAAATAATAGCCAATATCAAACTGACCATCGAGATTGGTGAAATTATTGATTCCAAACGGAGGGACGAGTTTGTTATACTAAAAAATCACCTTTTCGAAGATGTGAGTGATGTTAACTGATGCATTTCAAATAGATGCGATTTCAGATCAATAATATCCAACTGATATACGATGGAAAACGAGATA</canonical_amplicon>
		<polymorphic_amplicon>AAATAAGACCTCAAACTTCAGTGTGTCATTCAAAACATAAAATCTCTAATATCTTCATTCGGGGAAATAATAGCCAATATCAAACTGACCATCGAGATTGGTGAAATTATTGAWTCCAAACGGAGGGACGAGTTTGTTATACTAAAAAATCACCTTTTCGAAGATGTGAGTGATGTTAACTGATGCATTTCAAATAGATGCGATTTCAGATCAATAATATCCAACTGATATACGATGGAAAACGAGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25670</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>31689</contig_pos>
        <strand>+</strand>
        <context>CCAGTGTTGC[C/G]TAAATCCAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GATAAATTCTTTTTTACCAGGTTATCTTTTGAATACTAATCCAGTGTTGC</left_flank>
        <right_flank>TAAATCCAAATATTATTGAATTTTTTGAATTTTTCGCTTCGAGTTATTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATTAAATGTGAATTTACAGATAGTCAGAAAATGTAATATTGAGATTTGTATCAGTAGGAGAATGTTGTGAGTGAACTGCGATTCTGTTAATATATTAATGCAATTGTAAGGAAAATGCAATTGTAGGGAATAATGCAATTGTAAGGAAAAATGCAATTGTAAGGAATACTCCCCAATTTTTAACTCCCGGTCAATCTTCTACTTTAATCCAATCTTCCAGCACCCGGTTTTAGTTCTGCTTACCTTTTCCCCTCTTTTATATATCTTGCCAACCTTACATGTTTACCATTTTCTTCCCCGTTCTCTAGGTTCATCTCGTTAAGGATTTTATCTAGAACTCCCGTTATAACTTTTGTGCCATATTTTCTTCTGATCAATAAATTATCAAGTACAGTAATTGGAGAAATTATGAGCACAAAAGCCATCCGGATGGTTCGACGATTCGATGATAAATTCTTTTTTACCAGGTTATCTTTTGAATACTAATCCAGTGTTGCCTAAATCCAAATATTATTGAATTTTTTGAATTTTTCGCTTCGAGTTATTCTTAAACCCCAAGAAAAATTTAAAAAGTTCCACGTTCAATTTTGTGGATATTCTATCGTTTTCAACATTATTTTGACATTTCAGAGTTCCAAAATTCCAAATATCAACGGTTCTGAGATTTATAATTTTCTAGAGTATGAGATTTTCAGTTTTTCTCAGATTCTTATAATTTGGAAGTTTGCATCATCCTAGGACTCCGAGAGTCTATATATTTTTTCATACATGAACTTTCTCTTCCCAAAACACAGTTTTTTTCTCTCGTTCACATGTACTATTTGCAGACTCCGCCCACTGAGACCCCTGGTGTTCTTCCCAGTTGAATTCGATTAGCATCCTCCTATAAAAGGGCTCATCCCCTAGCCTCATATCAATTCATTCGTTTTTTTCAACTGAAAAGCATGAAAGCCTTCAATTTTTTTTTATCATTGGAATGGTCGCTGTTCTTGTTTTGA</canonical>
            <polymorphic>TTATTAAATGTGAATTTACAGATAGTCAGAAAATGTAATATTGAGATTTGTATCAGTAGGAGAATGTTGTGAGTGAACTGCGATTCTGTTAATATATTAATGCAATTGTAAGGAAAATGCAATTGTAGGGAATAATGCAATTGTAAGGAAAAATGCAATTGTAAGGAATACTCCCCAATTTTTAACTCCCGGTCAATCTTCTACTTTAATCCAATCTTCCAGCACCCGGTTTTAGTTCTGCTTACCTTTTCCCCTCTTTTATATATCTTGCCAACCTTACATGTTTACCATTTTCTTCCCCGTTCTCTAGGTTCATCTCGTTAAGGATTTTATCTAGAACTCCCGTTATAACTTTTGTGCCATATTTTCTTCTGATCAATAAATTATCAAGTACAGTAATTGGAGAAATTATGAGCACAAAAGCCATCCGGATGGTTCGACGATTCGATGATAAATTCTTTTTTACCAGGTTATCTTTTGAATACTAATCCAGTGTTGCSTAAATCCAAATATTATTGAATTTTTTGAATTTTTCGCTTCGAGTTATTCTTAAACCCCAAGAAAAATTTAAAAAGTTCCACGTTCAATTTTGTGGATATTCTATCGTTTTCAACATTATTTTGACATTTCAGAGTTCCAAAATTCCAAATATCAACGGTTCTGAGATTTATAATTTTCTAGAGTATGAGATTTTCAGTTTTTCTCAGATTCTTATAATTTGGAAGTTTGCATCATCCTAGGACTCCGAGAGTCTATATATTTTTTCATACATGAACTTTCTCTTCCCAAAACACAGTTTTTTTCTCTCGTTCACATGTACTATTTGCAGACTCCGCCCACTGAGACCCCTGGTGTTCTTCCCAGTTGAATTCGATTAGCATCCTCCTATAAAAGGGCTCATCCCCTAGCCTCATATCAATTCATTCGTTTTTTTCAACTGAAAAGCATGAAAGCCTTCAATTTTTTTTTATCATTGGAATGGTCGCTGTTCTTGTTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAATTGGAGAAATTATGAGCAC</pcr_primer_p1>
		<pcr_primer_p2>GGAACTCTGAAATGTCAAAATAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GTAATTGGAGAAATTATGAGCACAAAAGCCATCCGGATGGTTCGACGATTCGATGATAAATTCTTTTTTACCAGGTTATCTTTTGAATACTAATCCAGTGTTGCCTAAATCCAAATATTATTGAATTTTTTGAATTTTTCGCTTCGAGTTATTCTTAAACCCCAAGAAAAATTTAAAAAGTTCCACGTTCAATTTTGTGGATATTCTATCGTTTTCAACATTATTTTGACATTTCAGAGTTCC</canonical_amplicon>
		<polymorphic_amplicon>GTAATTGGAGAAATTATGAGCACAAAAGCCATCCGGATGGTTCGACGATTCGATGATAAATTCTTTTTTACCAGGTTATCTTTTGAATACTAATCCAGTGTTGCSTAAATCCAAATATTATTGAATTTTTTGAATTTTTCGCTTCGAGTTATTCTTAAACCCCAAGAAAAATTTAAAAAGTTCCACGTTCAATTTTGTGGATATTCTATCGTTTTCAACATTATTTTGACATTTCAGAGTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25671</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>90241</contig_pos>
        <strand>+</strand>
        <context>TTTAGGACTA[A/G]CCATACCATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTGTTTAGGACTA</left_flank>
        <right_flank>CCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGAGACGCATCGATTTGTTTTTTTACCAACTCTCTACGACCATTTTGAAGCAAGTTACGGTGGTTTTAAAAAAATGTACTGAGGCTCTGGCGGCCACAGAGAGCGCGCACTTTTTTTTTTTTTTTTCATTTTTTCGAGTACTGTAGGGGTCCCTGAGTGTAAATTATGTGTTTTTAAGTATTTTTAAGATTTTTGCACGCTTCTCCCAACTTCAAGCTTCTTCTAACTTTAAGCTTCTCCTAAATTTAAGCTTGGATGGAGGCGCTGTCGCGCCTCCATTAAAACTTTTAAATACATTTCCATCATATCATTTCACCAGAAGGCTACAATATNNNNNNNNNNNGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCGTAAAATTGCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTGTTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGATTGAGAAAATTAGGCTTAGGCTCAGGCGCAGGCGTAGCCTGCGGCATTTGGGGTTAGGGAAAAATATCATCGTCTCCGATTTTGTCCAAAGCGGTCCAAAAATTTCTGGGATCATTTAATTAGGCTAGCGCAGAATTCCTGCCGCCTACGAAATTACCGTAGTCGAGTTATAAGCCAAACTACAAAAACTACAAAAATTTGTAAATTGAATAACTTCCGTCAACGTTAACGGATCGAACTGAAACTTGGTCAACATTATTTTTATAAAAGACATTATCGATTAAAAAAATCGATTATCGATTGATTATTGATTAAAAGGAGAAAAACTTCCGACCTCAAAAAAAACTGTTAACACAAGTGGAACGAAATTTTGCATATCGATCACACTTAAGACGTACTATACAATATCATAATCGTATAAAATAAATTCACTTTTGACCAAAGTTATA</canonical>
            <polymorphic>ATCGAGACGCATCGATTTGTTTTTTTACCAACTCTCTACGACCATTTTGAAGCAAGTTACGGTGGTTTTAAAAAAATGTACTGAGGCTCTGGCGGCCACAGAGAGCGCGCACTTTTTTTTTTTTTTTTCATTTTTTCGAGTACTGTAGGGGTCCCTGAGTGTAAATTATGTGTTTTTAAGTATTTTTAAGATTTTTGCACGCTTCTCCCAACTTCAAGCTTCTTCTAACTTTAAGCTTCTCCTAAATTTAAGCTTGGATGGAGGCGCTGTCGCGCCTCCATTAAAACTTTTAAATACATTTCCATCATATCATTTCACCAGAAGGCTACAATATNNNNNNNNNNNGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCGTAAAATTGCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTGTTTAGGACTARCCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGATTGAGAAAATTAGGCTTAGGCTCAGGCGCAGGCGTAGCCTGCGGCATTTGGGGTTAGGGAAAAATATCATCGTCTCCGATTTTGTCCAAAGCGGTCCAAAAATTTCTGGGATCATTTAATTAGGCTAGCGCAGAATTCCTGCCGCCTACGAAATTACCGTAGTCGAGTTATAAGCCAAACTACAAAAACTACAAAAATTTGTAAATTGAATAACTTCCGTCAACGTTAACGGATCGAACTGAAACTTGGTCAACATTATTTTTATAAAAGACATTATCGATTAAAAAAATCGATTATCGATTGATTATTGATTAAAAGGAGAAAAACTTCCGACCTCAAAAAAAACTGTTAACACAAGTGGAACGAAATTTTGCATATCGATCACACTTAAGACGTACTATACAATATCATAATCGTATAAAATAAATTCACTTTTGACCAAAGTTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCACCAGAAGGCTACAATA</pcr_primer_p1>
		<pcr_primer_p2>TAATTTTCTCAATCTTCGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTTCACCAGAAGGCTACAATATNNNNNNNNNNNGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCGTAAAATTGCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTGTTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGATTGAGAAAATTA</canonical_amplicon>
		<polymorphic_amplicon>ATTTCACCAGAAGGCTACAATATNNNNNNNNNNNGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCGTAAAATTGCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTGTTTAGGACTARCCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGATTGAGAAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25672</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>180603</contig_pos>
        <strand>+</strand>
        <context>GAAAAAAAAA[A/C]ATTTTTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCGAAATTTTCTACGAATTTTGACATTTATTCGAAAATTGAAAAAAAAA</left_flank>
        <right_flank>ATTTTTTTTTTTGAGGAAATGTCTAACATATGAAATTTCATTCAATTATT</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTCTGTTTTGGTACTGAAAACGTGAGAAAACAAGTGACATTCAGAAATCGTCAAGTAGCTGAAAAGCAAGAAATTCTCAAAAAATTCTTTGTATCCTCGAAATTCCCATTGACATTGTACTCATTTCAAACAGAATTTTACAATTATTACAATTGTAGTAGTTTTATTGGTTATGATAAATATTCAAACTTTTCACAATTCATCTGATTTATGCAAGTTTTTTAAACCTAATTTTTGGTTTAGATCCAATTTTTTGTTATCTCACGTCTTCTTATTTCTTGTTTTCGTCAGTTTTGTACTCTTACAAAGGAACATCAACACCTTGTCAACCCTGATTTTGATGAAAGTTTCCTGATAGGTTAAAAATAGTCTACCTAAACAATTTGATGAATAATCCTTATCTCACAATCTTGTCAGACATTTTTTCAAAACAAATTACTATATTTTCGAAATTTTCTACGAATTTTGACATTTATTCGAAAATTGAAAAAAAAACATTTTTTTTTTTGAGGAAATGTCTAACATATGAAATTTCATTCAATTATTTTGTACTGTCTTCCCTACCCCTAGTGAAAATGCACATTTCTATCGAGAAAAATCATCTGCGTGGTATATATTGCTCTTCCACACCGGTTGGACACTCGAGGCCTGCTTGCTCAGGATCATATTTCATCATTCTGTTGTAGAGAGTGTAAAAAACTGAGAAACGCTAAGACGAAAAGAGAAAAGGCGCAGAGAAAAATACAATCGATCCACCGATGTGTCTTGTTCTACCCACATACCGACATATACCCCCTCATTTTTTCCTGTTGACGACTAAACTGGATAGACGTCTAAATTTCCCTGGGCGCTCTCCAAAAATTCTGAAAACGAATGGGTTTTGGAGAGTTCTTCTTTAATTTTTTGGTTATTTTCTACCCCCTATTATATTCTAGAAATCTTTTGAAAAAAGGAATTCTACGAAATTTCGTTTGGCTTTGTTTTGAAGAAAGGTTA</canonical>
            <polymorphic>TTTTTTCTGTTTTGGTACTGAAAACGTGAGAAAACAAGTGACATTCAGAAATCGTCAAGTAGCTGAAAAGCAAGAAATTCTCAAAAAATTCTTTGTATCCTCGAAATTCCCATTGACATTGTACTCATTTCAAACAGAATTTTACAATTATTACAATTGTAGTAGTTTTATTGGTTATGATAAATATTCAAACTTTTCACAATTCATCTGATTTATGCAAGTTTTTTAAACCTAATTTTTGGTTTAGATCCAATTTTTTGTTATCTCACGTCTTCTTATTTCTTGTTTTCGTCAGTTTTGTACTCTTACAAAGGAACATCAACACCTTGTCAACCCTGATTTTGATGAAAGTTTCCTGATAGGTTAAAAATAGTCTACCTAAACAATTTGATGAATAATCCTTATCTCACAATCTTGTCAGACATTTTTTCAAAACAAATTACTATATTTTCGAAATTTTCTACGAATTTTGACATTTATTCGAAAATTGAAAAAAAAAMATTTTTTTTTTTGAGGAAATGTCTAACATATGAAATTTCATTCAATTATTTTGTACTGTCTTCCCTACCCCTAGTGAAAATGCACATTTCTATCGAGAAAAATCATCTGCGTGGTATATATTGCTCTTCCACACCGGTTGGACACTCGAGGCCTGCTTGCTCAGGATCATATTTCATCATTCTGTTGTAGAGAGTGTAAAAAACTGAGAAACGCTAAGACGAAAAGAGAAAAGGCGCAGAGAAAAATACAATCGATCCACCGATGTGTCTTGTTCTACCCACATACCGACATATACCCCCTCATTTTTTCCTGTTGACGACTAAACTGGATAGACGTCTAAATTTCCCTGGGCGCTCTCCAAAAATTCTGAAAACGAATGGGTTTTGGAGAGTTCTTCTTTAATTTTTTGGTTATTTTCTACCCCCTATTATATTCTAGAAATCTTTTGAAAAAAGGAATTCTACGAAATTTCGTTTGGCTTTGTTTTGAAGAAAGGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAGTTTCCTGATAGGTTAAA</pcr_primer_p1>
		<pcr_primer_p2>TAGAAATGTGCATTTTCACTAGG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGAAAGTTTCCTGATAGGTTAAAAATAGTCTACCTAAACAATTTGATGAATAATCCTTATCTCACAATCTTGTCAGACATTTTTTCAAAACAAATTACTATATTTTCGAAATTTTCTACGAATTTTGACATTTATTCGAAAATTGAAAAAAAAACATTTTTTTTTTTGAGGAAATGTCTAACATATGAAATTTCATTCAATTATTTTGTACTGTCTTCCCTACCCCTAGTGAAAATGCACATTTCTA</canonical_amplicon>
		<polymorphic_amplicon>TGAAAGTTTCCTGATAGGTTAAAAATAGTCTACCTAAACAATTTGATGAATAATCCTTATCTCACAATCTTGTCAGACATTTTTTCAAAACAAATTACTATATTTTCGAAATTTTCTACGAATTTTGACATTTATTCGAAAATTGAAAAAAAAAMATTTTTTTTTTTGAGGAAATGTCTAACATATGAAATTTCATTCAATTATTTTGTACTGTCTTCCCTACCCCTAGTGAAAATGCACATTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25673</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>242447</contig_pos>
        <strand>+</strand>
        <context>AAAGAAACGC[C/T]TGCTGGATGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCAATTACCGCATGAATGTTTATATTATCCTTCTCCGCCAAAGAAACGC</left_flank>
        <right_flank>TGCTGGATGGATGTCTGTCGGATGCCGCTATTCACAGCCGCTCAAAGGAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAGAAATCTACCGTAACCCAGATAGTTTCTCAAAGTTTTGGAATTTTTACAAGAAAATTACAATAACGACAAAACTTTGAAACTTAGAAAGTTGCAAAAGTCTACCGTGATACAGGCATTTTCTACAAATTTTCGAAAATTTGAAAAATGTGACGAACACTACAGTAATCCCAATTATGAGTCATGACACTCTTTCATTGTGTTGACATTACTCAGGGCAAGCAACCAGTTCGGAACTACAGTATCACATGAATTGGACGCATGAATCATGCTATTCCCCCTTCCCCCCCCCCCCCCCCCTCTAACTCTAATTTTTTTCGGACAACAATAATAATGTGACCTTTTTTTCAAAATGTTTTTTATCGGGCCTGGTGATCACTTTTGATAACTTCTGAGAAATTCTCTAAGAAGCGTCTCAACCACGGAGATCCATCTGGTGTTAAGTATATCAATTACCGCATGAATGTTTATATTATCCTTCTCCGCCAAAGAAACGCTTGCTGGATGGATGTCTGTCGGATGCCGCTATTCACAGCCGCTCAAAGGAAAAAAAGGAAAAAAGGGAGGACGTCGTATAAGTATCGATGACGAGCAGCCCACATTCATAGGCCATTCTCGATCTAGCCTGAAATTTCCTTTAAAATCTGGGTTAACAAGGTGTTGAGGCTCTCTTCTAAATTAGTCTAAAATTCTCAATGGCAGTTATCAAATTGATAAAGCTCCGGGGATTAGTGAAACAATATGAAATGTTTTTTTTGGTTTTTGAATATACTCCACAACCTAATCTGATGTGCTATTACATATTTTACGGTATCTAGCTTTTCTCATTCATTATTTATTATGCTTGCAAAAAAATTTTTATCACATTTTTATTACTCTTCCTCTAACACGGCGCATCTCTGCGTCTCTAATTTCTTTTCCCTCGCCCGGTACCGTCTCTCGCTGCAACCATAAACCACGCCCCTTCAACCTGTCCTTCTCTATCCCACACTAACTTG</canonical>
            <polymorphic>TGGAGAAATCTACCGTAACCCAGATAGTTTCTCAAAGTTTTGGAATTTTTACAAGAAAATTACAATAACGACAAAACTTTGAAACTTAGAAAGTTGCAAAAGTCTACCGTGATACAGGCATTTTCTACAAATTTTCGAAAATTTGAAAAATGTGACGAACACTACAGTAATCCCAATTATGAGTCATGACACTCTTTCATTGTGTTGACATTACTCAGGGCAAGCAACCAGTTCGGAACTACAGTATCACATGAATTGGACGCATGAATCATGCTATTCCCCCTTCCCCCCCCCCCCCCCCCTCTAACTCTAATTTTTTTCGGACAACAATAATAATGTGACCTTTTTTTCAAAATGTTTTTTATCGGGCCTGGTGATCACTTTTGATAACTTCTGAGAAATTCTCTAAGAAGCGTCTCAACCACGGAGATCCATCTGGTGTTAAGTATATCAATTACCGCATGAATGTTTATATTATCCTTCTCCGCCAAAGAAACGCYTGCTGGATGGATGTCTGTCGGATGCCGCTATTCACAGCCGCTCAAAGGAAAAAAAGGAAAAAAGGGAGGACGTCGTATAAGTATCGATGACGAGCAGCCCACATTCATAGGCCATTCTCGATCTAGCCTGAAATTTCCTTTAAAATCTGGGTTAACAAGGTGTTGAGGCTCTCTTCTAAATTAGTCTAAAATTCTCAATGGCAGTTATCAAATTGATAAAGCTCCGGGGATTAGTGAAACAATATGAAATGTTTTTTTTGGTTTTTGAATATACTCCACAACCTAATCTGATGTGCTATTACATATTTTACGGTATCTAGCTTTTCTCATTCATTATTTATTATGCTTGCAAAAAAATTTTTATCACATTTTTATTACTCTTCCTCTAACACGGCGCATCTCTGCGTCTCTAATTTCTTTTCCCTCGCCCGGTACCGTCTCTCGCTGCAACCATAAACCACGCCCCTTCAACCTGTCCTTCTCTATCCCACACTAACTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTATATCAATTACCGCATGAA</pcr_primer_p1>
		<pcr_primer_p2>TAATTTAGAAGAGAGCCTCAACA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AAGTATATCAATTACCGCATGAATGTTTATATTATCCTTCTCCGCCAAAGAAACGCTTGCTGGATGGATGTCTGTCGGATGCCGCTATTCACAGCCGCTCAAAGGAAAAAAAGGAAAAAAGGGAGGACGTCGTATAAGTATCGATGACGAGCAGCCCACATTCATAGGCCATTCTCGATCTAGCCTGAAATTTCCTTTAAAATCTGGGTTAACAAGGTGTTGAGGCTCTCTTCTAAATTA</canonical_amplicon>
		<polymorphic_amplicon>AAGTATATCAATTACCGCATGAATGTTTATATTATCCTTCTCCGCCAAAGAAACGCYTGCTGGATGGATGTCTGTCGGATGCCGCTATTCACAGCCGCTCAAAGGAAAAAAAGGAAAAAAGGGAGGACGTCGTATAAGTATCGATGACGAGCAGCCCACATTCATAGGCCATTCTCGATCTAGCCTGAAATTTCCTTTAAAATCTGGGTTAACAAGGTGTTGAGGCTCTCTTCTAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25674</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>242824</contig_pos>
        <strand>+</strand>
        <context>CATTTTTATT[A/G]CTCTTCCTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATTCATTATTTATTATGCTTGCAAAAAAATTTTTATCACATTTTTATT</left_flank>
        <right_flank>CTCTTCCTCTAACACGGCGCATCTCTGCGTCTCTAATTTCTTTTCCCTCG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACTTTTGATAACTTCTGAGAAATTCTCTAAGAAGCGTCTCAACCACGGAGATCCATCTGGTGTTAAGTATATCAATTACCGCATGAATGTTTATATTATCCTTCTCCGCCAAAGAAACGCTTGCTGGATGGATGTCTGTCGGATGCCGCTATTCACAGCCGCTCAAAGGAAAAAAAGGAAAAAAGGGAGGACGTCGTATAAGTATCGATGACGAGCAGCCCACATTCATAGGCCATTCTCGATCTAGCCTGAAATTTCCTTTAAAATCTGGGTTAACAAGGTGTTGAGGCTCTCTTCTAAATTAGTCTAAAATTCTCAATGGCAGTTATCAAATTGATAAAGCTCCGGGGATTAGTGAAACAATATGAAATGTTTTTTTTGGTTTTTGAATATACTCCACAACCTAATCTGATGTGCTATTACATATTTTACGGTATCTAGCTTTTCTCATTCATTATTTATTATGCTTGCAAAAAAATTTTTATCACATTTTTATTACTCTTCCTCTAACACGGCGCATCTCTGCGTCTCTAATTTCTTTTCCCTCGCCCGGTACCGTCTCTCGCTGCAACCATAAACCACGCCCCTTCAACCTGTCCTTCTCTATCCCACACTAACTTGTCATTTTGTACTTTTAACTCTGTCGGAAGATGTGACTCATAGCCCTCTATCTGATAAATATTCCTGAAGCTTTTTCGGAAAGAACAAATGTACCGCGCTCTAGTGAACAAAACGCCAATTCAACTAGAAAAAAAAACATTTTCTACCATTTACGTCATTTTTTCTATTTTCCAGAAATGTTACTGTCATGTTGGTGATTTCCAACCATTTTCCTATTTTTTTTTGGTGATTTTTTTTTGTTTCTTCTTCATATAACGTTCAGTTCTGACTGTATGCACTGTGTCCCACCTATTTTTTGTCTTTTTGTTGCTTACTCTGCGCCGCGTGTACTTGTAATGCTTTCATCGCCTATAACAGCTGTCTGAAAAAACACGATT</canonical>
            <polymorphic>TCACTTTTGATAACTTCTGAGAAATTCTCTAAGAAGCGTCTCAACCACGGAGATCCATCTGGTGTTAAGTATATCAATTACCGCATGAATGTTTATATTATCCTTCTCCGCCAAAGAAACGCTTGCTGGATGGATGTCTGTCGGATGCCGCTATTCACAGCCGCTCAAAGGAAAAAAAGGAAAAAAGGGAGGACGTCGTATAAGTATCGATGACGAGCAGCCCACATTCATAGGCCATTCTCGATCTAGCCTGAAATTTCCTTTAAAATCTGGGTTAACAAGGTGTTGAGGCTCTCTTCTAAATTAGTCTAAAATTCTCAATGGCAGTTATCAAATTGATAAAGCTCCGGGGATTAGTGAAACAATATGAAATGTTTTTTTTGGTTTTTGAATATACTCCACAACCTAATCTGATGTGCTATTACATATTTTACGGTATCTAGCTTTTCTCATTCATTATTTATTATGCTTGCAAAAAAATTTTTATCACATTTTTATTRCTCTTCCTCTAACACGGCGCATCTCTGCGTCTCTAATTTCTTTTCCCTCGCCCGGTACCGTCTCTCGCTGCAACCATAAACCACGCCCCTTCAACCTGTCCTTCTCTATCCCACACTAACTTGTCATTTTGTACTTTTAACTCTGTCGGAAGATGTGACTCATAGCCCTCTATCTGATAAATATTCCTGAAGCTTTTTCGGAAAGAACAAATGTACCGCGCTCTAGTGAACAAAACGCCAATTCAACTAGAAAAAAAAACATTTTCTACCATTTACGTCATTTTTTCTATTTTCCAGAAATGTTACTGTCATGTTGGTGATTTCCAACCATTTTCCTATTTTTTTTTGGTGATTTTTTTTTGTTTCTTCTTCATATAACGTTCAGTTCTGACTGTATGCACTGTGTCCCACCTATTTTTTGTCTTTTTGTTGCTTACTCTGCGCCGCGTGTACTTGTAATGCTTTCATCGCCTATAACAGCTGTCTGAAAAAACACGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTACGGTATCTAGCTTTTCTCA</pcr_primer_p1>
		<pcr_primer_p2>TATCAGATAGAGGGCTATGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTACGGTATCTAGCTTTTCTCATTCATTATTTATTATGCTTGCAAAAAAATTTTTATCACATTTTTATTACTCTTCCTCTAACACGGCGCATCTCTGCGTCTCTAATTTCTTTTCCCTCGCCCGGTACCGTCTCTCGCTGCAACCATAAACCACGCCCCTTCAACCTGTCCTTCTCTATCCCACACTAACTTGTCATTTTGTACTTTTAACTCTGTCGGAAGATGTGACTCATAGCCCTCTATCTGATA</canonical_amplicon>
		<polymorphic_amplicon>TTTACGGTATCTAGCTTTTCTCATTCATTATTTATTATGCTTGCAAAAAAATTTTTATCACATTTTTATTRCTCTTCCTCTAACACGGCGCATCTCTGCGTCTCTAATTTCTTTTCCCTCGCCCGGTACCGTCTCTCGCTGCAACCATAAACCACGCCCCTTCAACCTGTCCTTCTCTATCCCACACTAACTTGTCATTTTGTACTTTTAACTCTGTCGGAAGATGTGACTCATAGCCCTCTATCTGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25675</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>268134</contig_pos>
        <strand></strand>
        <context>TTGGCTCAGA[A/T]CAAACGGCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAGAAGAGAAAAGAAGAAACAAGTCTGAATCTGGTTTATTGGCTCAGA</left_flank>
        <right_flank>CAAACGGCATTGATGATGATGAAGAGGAAAAGAATAAGAAGATAGCAAAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTTGAAAATACGAGGGTTGAGAAAACTACAGTAATTCCGATTTTTATAAACTCGACTTAATTTTTCTCTTTTCAAATTTATCACATCCCCAGACGTAGAACAAAAAAAACTCATTTTGGTACCTACACTTTGCCCTCTCTCTTTCTCTCTCTCTTCTAACTCTCTCTCTTCTTGTAAAAGTCTCTCTCTCTCTCTCTTCTTGTAAAAGGGTAATTGGAGAAACACTCTGGAAAAACAGAAGGACGAGAAAGAAGAGAAACAGAGGGAAGGAAAAGGAGAAAAAAATTGGTGGGGTGTAGAAAATTGAAATGTGATATGGGTCGAAGGCGTCGTTAGTTGCGGTAAAACGTTGAAGAAACCCTCCTTTTTTCCTCCTTTTCTTGCACTCCTTTTCTGGGTCCAATGACGCGTTCTTCTACATGGGAAAGAGCAATAAGAGCACTAAGAAAAAGAAGAGAAAAGAAGAAACAAGTCTGAATCTGGTTTATTGGCTCAGAACAAACGGCATTGATGATGATGAAGAGGAAAAGAATAAGAAGATAGCAAAAAAGGGTATGACCCTGTCTTGTCTCTTGCCCCATTGGACCGGATTTTGATGTTTTTCAGATGAAAAAGAAAGAAAAAAGAAGAAGAAGAAGAAGAAGACAAAGGAAAAAGCATTGAAAGAGCAGAAATTGAATCTGACGGCTCAGGAATAAGAAGGTTACAGAGTACACGGATCAGTTTTTTTTGTAGTCTGAACATTTTTGAAACTTTACAAGAGAAAAATTAAAATACGCTAGGTTCAACCTATGTACAAAGAAAAATCTGAATGTGAGAGAAAAATAATGTGCTACAAAATTATTTTCCATGAGCACGCCCCGGAAAATGGATCTGCCACCCCACGTGCTTCAGAAAAAGTGGGGGAAATAATGGTGAAGAAAAATGACTGGATTTGATCTACCGAACTTTTTCATAATGAGGCTTTTTGGTACAAGAAGACAATAGGACAACATTTT</canonical>
            <polymorphic>GGTTTGAAAATACGAGGGTTGAGAAAACTACAGTAATTCCGATTTTTATAAACTCGACTTAATTTTTCTCTTTTCAAATTTATCACATCCCCAGACGTAGAACAAAAAAAACTCATTTTGGTACCTACACTTTGCCCTCTCTCTTTCTCTCTCTCTTCTAACTCTCTCTCTTCTTGTAAAAGTCTCTCTCTCTCTCTCTTCTTGTAAAAGGGTAATTGGAGAAACACTCTGGAAAAACAGAAGGACGAGAAAGAAGAGAAACAGAGGGAAGGAAAAGGAGAAAAAAATTGGTGGGGTGTAGAAAATTGAAATGTGATATGGGTCGAAGGCGTCGTTAGTTGCGGTAAAACGTTGAAGAAACCCTCCTTTTTTCCTCCTTTTCTTGCACTCCTTTTCTGGGTCCAATGACGCGTTCTTCTACATGGGAAAGAGCAATAAGAGCACTAAGAAAAAGAAGAGAAAAGAAGAAACAAGTCTGAATCTGGTTTATTGGCTCAGAWCAAACGGCATTGATGATGATGAAGAGGAAAAGAATAAGAAGATAGCAAAAAAGGGTATGACCCTGTCTTGTCTCTTGCCCCATTGGACCGGATTTTGATGTTTTTCAGATGAAAAAGAAAGAAAAAAGAAGAAGAAGAAGAAGAAGACAAAGGAAAAAGCATTGAAAGAGCAGAAATTGAATCTGACGGCTCAGGAATAAGAAGGTTACAGAGTACACGGATCAGTTTTTTTTGTAGTCTGAACATTTTTGAAACTTTACAAGAGAAAAATTAAAATACGCTAGGTTCAACCTATGTACAAAGAAAAATCTGAATGTGAGAGAAAAATAATGTGCTACAAAATTATTTTCCATGAGCACGCCCCGGAAAATGGATCTGCCACCCCACGTGCTTCAGAAAAAGTGGGGGAAATAATGGTGAAGAAAAATGACTGGATTTGATCTACCGAACTTTTTCATAATGAGGCTTTTTGGTACAAGAAGACAATAGGACAACATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAATAAGAGCACTAAGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>ATTCAATTTCTGCTCTTTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCAATAAGAGCACTAAGAAAAAGAAGAGAAAAGAAGAAACAAGTCTGAATCTGGTTTATTGGCTCAGAACAAACGGCATTGATGATGATGAAGAGGAAAAGAATAAGAAGATAGCAAAAAAGGGTATGACCCTGTCTTGTCTCTTGCCCCATTGGACCGGATTTTGATGTTTTTCAGATGAAAAAGAAAGAAAAAAGAAGAAGAAGAAGAAGAAGACAAAGGAAAAAGCATTGAAAGAGCAGAAATTGAAT</canonical_amplicon>
		<polymorphic_amplicon>GCAATAAGAGCACTAAGAAAAAGAAGAGAAAAGAAGAAACAAGTCTGAATCTGGTTTATTGGCTCAGAWCAAACGGCATTGATGATGATGAAGAGGAAAAGAATAAGAAGATAGCAAAAAAGGGTATGACCCTGTCTTGTCTCTTGCCCCATTGGACCGGATTTTGATGTTTTTCAGATGAAAAAGAAAGAAAAAAGAAGAAGAAGAAGAAGAAGACAAAGGAAAAAGCATTGAAAGAGCAGAAATTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25676</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>268471</contig_pos>
        <strand></strand>
        <context>ATAATGTGCT[A/T]CAAAATTATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAACCTATGTACAAAGAAAAATCTGAATGTGAGAGAAAAATAATGTGCT</left_flank>
        <right_flank>CAAAATTATTTTCCATGAGCACGCCCCGGAAAATGGATCTGCCACCCCAC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGCGGTAAAACGTTGAAGAAACCCTCCTTTTTTCCTCCTTTTCTTGCACTCCTTTTCTGGGTCCAATGACGCGTTCTTCTACATGGGAAAGAGCAATAAGAGCACTAAGAAAAAGAAGAGAAAAGAAGAAACAAGTCTGAATCTGGTTTATTGGCTCAGAACAAACGGCATTGATGATGATGAAGAGGAAAAGAATAAGAAGATAGCAAAAAAGGGTATGACCCTGTCTTGTCTCTTGCCCCATTGGACCGGATTTTGATGTTTTTCAGATGAAAAAGAAAGAAAAAAGAAGAAGAAGAAGAAGAAGACAAAGGAAAAAGCATTGAAAGAGCAGAAATTGAATCTGACGGCTCAGGAATAAGAAGGTTACAGAGTACACGGATCAGTTTTTTTTGTAGTCTGAACATTTTTGAAACTTTACAAGAGAAAAATTAAAATACGCTAGGTTCAACCTATGTACAAAGAAAAATCTGAATGTGAGAGAAAAATAATGTGCTACAAAATTATTTTCCATGAGCACGCCCCGGAAAATGGATCTGCCACCCCACGTGCTTCAGAAAAAGTGGGGGAAATAATGGTGAAGAAAAATGACTGGATTTGATCTACCGAACTTTTTCATAATGAGGCTTTTTGGTACAAGAAGACAATAGGACAACATTTTTCGGGTTTTTTTGAAACAAAGAACTTTGCAAAATTTTGAAAAGTGACGTGAAAGTCATTTCATTTTATTCATCGTAGTCATTTTCTTAGAGCAGATGTTCGAAATAGAGAAAGCTGACATAAAAATCATAAAAAATCATGACGAAATGGAGATAAATTTGAATTTTCATGATATTCTGGAGAAATGAAAAAGTTTATATTTGAGAAATGATGATAAATTTCAAAGAATTTTTATAATCAGAGGTTTTGAATAGGCTGTAATTGTGGGGTAAAAACATTGAAGCAAAAGTGTATAATGAGAAAAGAAAATTTTGTTGAGGAGATAAAGATCTAGTCCA</canonical>
            <polymorphic>GTTGCGGTAAAACGTTGAAGAAACCCTCCTTTTTTCCTCCTTTTCTTGCACTCCTTTTCTGGGTCCAATGACGCGTTCTTCTACATGGGAAAGAGCAATAAGAGCACTAAGAAAAAGAAGAGAAAAGAAGAAACAAGTCTGAATCTGGTTTATTGGCTCAGAACAAACGGCATTGATGATGATGAAGAGGAAAAGAATAAGAAGATAGCAAAAAAGGGTATGACCCTGTCTTGTCTCTTGCCCCATTGGACCGGATTTTGATGTTTTTCAGATGAAAAAGAAAGAAAAAAGAAGAAGAAGAAGAAGAAGACAAAGGAAAAAGCATTGAAAGAGCAGAAATTGAATCTGACGGCTCAGGAATAAGAAGGTTACAGAGTACACGGATCAGTTTTTTTTGTAGTCTGAACATTTTTGAAACTTTACAAGAGAAAAATTAAAATACGCTAGGTTCAACCTATGTACAAAGAAAAATCTGAATGTGAGAGAAAAATAATGTGCTWCAAAATTATTTTCCATGAGCACGCCCCGGAAAATGGATCTGCCACCCCACGTGCTTCAGAAAAAGTGGGGGAAATAATGGTGAAGAAAAATGACTGGATTTGATCTACCGAACTTTTTCATAATGAGGCTTTTTGGTACAAGAAGACAATAGGACAACATTTTTCGGGTTTTTTTGAAACAAAGAACTTTGCAAAATTTTGAAAAGTGACGTGAAAGTCATTTCATTTTATTCATCGTAGTCATTTTCTTAGAGCAGATGTTCGAAATAGAGAAAGCTGACATAAAAATCATAAAAAATCATGACGAAATGGAGATAAATTTGAATTTTCATGATATTCTGGAGAAATGAAAAAGTTTATATTTGAGAAATGATGATAAATTTCAAAGAATTTTTATAATCAGAGGTTTTGAATAGGCTGTAATTGTGGGGTAAAAACATTGAAGCAAAAGTGTATAATGAGAAAAGAAAATTTTGTTGAGGAGATAAAGATCTAGTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAGGAATAAGAAGGTTACAGA</pcr_primer_p1>
		<pcr_primer_p2>AAATCCAGTCATTTTTCTTCAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCAGGAATAAGAAGGTTACAGAGTACACGGATCAGTTTTTTTTGTAGTCTGAACATTTTTGAAACTTTACAAGAGAAAAATTAAAATACGCTAGGTTCAACCTATGTACAAAGAAAAATCTGAATGTGAGAGAAAAATAATGTGCTACAAAATTATTTTCCATGAGCACGCCCCGGAAAATGGATCTGCCACCCCACGTGCTTCAGAAAAAGTGGGGGAAATAATGGTGAAGAAAAATGACTGGATTT</canonical_amplicon>
		<polymorphic_amplicon>CTCAGGAATAAGAAGGTTACAGAGTACACGGATCAGTTTTTTTTGTAGTCTGAACATTTTTGAAACTTTACAAGAGAAAAATTAAAATACGCTAGGTTCAACCTATGTACAAAGAAAAATCTGAATGTGAGAGAAAAATAATGTGCTWCAAAATTATTTTCCATGAGCACGCCCCGGAAAATGGATCTGCCACCCCACGTGCTTCAGAAAAAGTGGGGGAAATAATGGTGAAGAAAAATGACTGGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25677</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>268502</contig_pos>
        <strand></strand>
        <context>ACGCCCCGGA[A/T]AATGGATCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGAGAAAAATAATGTGCTACAAAATTATTTTCCATGAGCACGCCCCGGA</left_flank>
        <right_flank>AATGGATCTGCCACCCCACGTGCTTCAGAAAAAGTGGGGGAAATAATGGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCCTCCTTTTCTTGCACTCCTTTTCTGGGTCCAATGACGCGTTCTTCTACATGGGAAAGAGCAATAAGAGCACTAAGAAAAAGAAGAGAAAAGAAGAAACAAGTCTGAATCTGGTTTATTGGCTCAGAACAAACGGCATTGATGATGATGAAGAGGAAAAGAATAAGAAGATAGCAAAAAAGGGTATGACCCTGTCTTGTCTCTTGCCCCATTGGACCGGATTTTGATGTTTTTCAGATGAAAAAGAAAGAAAAAAGAAGAAGAAGAAGAAGAAGACAAAGGAAAAAGCATTGAAAGAGCAGAAATTGAATCTGACGGCTCAGGAATAAGAAGGTTACAGAGTACACGGATCAGTTTTTTTTGTAGTCTGAACATTTTTGAAACTTTACAAGAGAAAAATTAAAATACGCTAGGTTCAACCTATGTACAAAGAAAAATCTGAATGTGAGAGAAAAATAATGTGCTACAAAATTATTTTCCATGAGCACGCCCCGGAAAATGGATCTGCCACCCCACGTGCTTCAGAAAAAGTGGGGGAAATAATGGTGAAGAAAAATGACTGGATTTGATCTACCGAACTTTTTCATAATGAGGCTTTTTGGTACAAGAAGACAATAGGACAACATTTTTCGGGTTTTTTTGAAACAAAGAACTTTGCAAAATTTTGAAAAGTGACGTGAAAGTCATTTCATTTTATTCATCGTAGTCATTTTCTTAGAGCAGATGTTCGAAATAGAGAAAGCTGACATAAAAATCATAAAAAATCATGACGAAATGGAGATAAATTTGAATTTTCATGATATTCTGGAGAAATGAAAAAGTTTATATTTGAGAAATGATGATAAATTTCAAAGAATTTTTATAATCAGAGGTTTTGAATAGGCTGTAATTGTGGGGTAAAAACATTGAAGCAAAAGTGTATAATGAGAAAAGAAAATTTTGTTGAGGAGATAAAGATCTAGTCCAAGAAAACTAAGCAGAATTTCATAAATTGTGA</canonical>
            <polymorphic>TTTTCCTCCTTTTCTTGCACTCCTTTTCTGGGTCCAATGACGCGTTCTTCTACATGGGAAAGAGCAATAAGAGCACTAAGAAAAAGAAGAGAAAAGAAGAAACAAGTCTGAATCTGGTTTATTGGCTCAGAACAAACGGCATTGATGATGATGAAGAGGAAAAGAATAAGAAGATAGCAAAAAAGGGTATGACCCTGTCTTGTCTCTTGCCCCATTGGACCGGATTTTGATGTTTTTCAGATGAAAAAGAAAGAAAAAAGAAGAAGAAGAAGAAGAAGACAAAGGAAAAAGCATTGAAAGAGCAGAAATTGAATCTGACGGCTCAGGAATAAGAAGGTTACAGAGTACACGGATCAGTTTTTTTTGTAGTCTGAACATTTTTGAAACTTTACAAGAGAAAAATTAAAATACGCTAGGTTCAACCTATGTACAAAGAAAAATCTGAATGTGAGAGAAAAATAATGTGCTACAAAATTATTTTCCATGAGCACGCCCCGGAWAATGGATCTGCCACCCCACGTGCTTCAGAAAAAGTGGGGGAAATAATGGTGAAGAAAAATGACTGGATTTGATCTACCGAACTTTTTCATAATGAGGCTTTTTGGTACAAGAAGACAATAGGACAACATTTTTCGGGTTTTTTTGAAACAAAGAACTTTGCAAAATTTTGAAAAGTGACGTGAAAGTCATTTCATTTTATTCATCGTAGTCATTTTCTTAGAGCAGATGTTCGAAATAGAGAAAGCTGACATAAAAATCATAAAAAATCATGACGAAATGGAGATAAATTTGAATTTTCATGATATTCTGGAGAAATGAAAAAGTTTATATTTGAGAAATGATGATAAATTTCAAAGAATTTTTATAATCAGAGGTTTTGAATAGGCTGTAATTGTGGGGTAAAAACATTGAAGCAAAAGTGTATAATGAGAAAAGAAAATTTTGTTGAGGAGATAAAGATCTAGTCCAAGAAAACTAAGCAGAATTTCATAAATTGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAGGAATAAGAAGGTTACAGA</pcr_primer_p1>
		<pcr_primer_p2>AAATCCAGTCATTTTTCTTCAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCAGGAATAAGAAGGTTACAGAGTACACGGATCAGTTTTTTTTGTAGTCTGAACATTTTTGAAACTTTACAAGAGAAAAATTAAAATACGCTAGGTTCAACCTATGTACAAAGAAAAATCTGAATGTGAGAGAAAAATAATGTGCTACAAAATTATTTTCCATGAGCACGCCCCGGAAAATGGATCTGCCACCCCACGTGCTTCAGAAAAAGTGGGGGAAATAATGGTGAAGAAAAATGACTGGATTT</canonical_amplicon>
		<polymorphic_amplicon>CTCAGGAATAAGAAGGTTACAGAGTACACGGATCAGTTTTTTTTGTAGTCTGAACATTTTTGAAACTTTACAAGAGAAAAATTAAAATACGCTAGGTTCAACCTATGTACAAAGAAAAATCTGAATGTGAGAGAAAAATAATGTGCTACAAAATTATTTTCCATGAGCACGCCCCGGAWAATGGATCTGCCACCCCACGTGCTTCAGAAAAAGTGGGGGAAATAATGGTGAAGAAAAATGACTGGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25678</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>268607</contig_pos>
        <strand></strand>
        <context>AGGCTTTTTG[G/A]TACAAGAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAAATGACTGGATTTGATCTACCGAACTTTTTCATAATGAGGCTTTTTG</left_flank>
        <right_flank>TACAAGAAGACAATAGGACAACATTTTTCGGGTTTTTTTGAAACAAAGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCTGAATCTGGTTTATTGGCTCAGAACAAACGGCATTGATGATGATGAAGAGGAAAAGAATAAGAAGATAGCAAAAAAGGGTATGACCCTGTCTTGTCTCTTGCCCCATTGGACCGGATTTTGATGTTTTTCAGATGAAAAAGAAAGAAAAAAGAAGAAGAAGAAGAAGAAGACAAAGGAAAAAGCATTGAAAGAGCAGAAATTGAATCTGACGGCTCAGGAATAAGAAGGTTACAGAGTACACGGATCAGTTTTTTTTGTAGTCTGAACATTTTTGAAACTTTACAAGAGAAAAATTAAAATACGCTAGGTTCAACCTATGTACAAAGAAAAATCTGAATGTGAGAGAAAAATAATGTGCTACAAAATTATTTTCCATGAGCACGCCCCGGAAAATGGATCTGCCACCCCACGTGCTTCAGAAAAAGTGGGGGAAATAATGGTGAAGAAAAATGACTGGATTTGATCTACCGAACTTTTTCATAATGAGGCTTTTTGGTACAAGAAGACAATAGGACAACATTTTTCGGGTTTTTTTGAAACAAAGAACTTTGCAAAATTTTGAAAAGTGACGTGAAAGTCATTTCATTTTATTCATCGTAGTCATTTTCTTAGAGCAGATGTTCGAAATAGAGAAAGCTGACATAAAAATCATAAAAAATCATGACGAAATGGAGATAAATTTGAATTTTCATGATATTCTGGAGAAATGAAAAAGTTTATATTTGAGAAATGATGATAAATTTCAAAGAATTTTTATAATCAGAGGTTTTGAATAGGCTGTAATTGTGGGGTAAAAACATTGAAGCAAAAGTGTATAATGAGAAAAGAAAATTTTGTTGAGGAGATAAAGATCTAGTCCAAGAAAACTAAGCAGAATTTCATAAATTGTGAACATGGAAATTTTCAAAATTTTCAAAACCATCAAGATTCTCTTTTTCAAACTTAAACTCAGAATTCCCAGAAAATGTCAAGGAATTCAAAAAAAAAATCATTAAG</canonical>
            <polymorphic>GTCTGAATCTGGTTTATTGGCTCAGAACAAACGGCATTGATGATGATGAAGAGGAAAAGAATAAGAAGATAGCAAAAAAGGGTATGACCCTGTCTTGTCTCTTGCCCCATTGGACCGGATTTTGATGTTTTTCAGATGAAAAAGAAAGAAAAAAGAAGAAGAAGAAGAAGAAGACAAAGGAAAAAGCATTGAAAGAGCAGAAATTGAATCTGACGGCTCAGGAATAAGAAGGTTACAGAGTACACGGATCAGTTTTTTTTGTAGTCTGAACATTTTTGAAACTTTACAAGAGAAAAATTAAAATACGCTAGGTTCAACCTATGTACAAAGAAAAATCTGAATGTGAGAGAAAAATAATGTGCTACAAAATTATTTTCCATGAGCACGCCCCGGAAAATGGATCTGCCACCCCACGTGCTTCAGAAAAAGTGGGGGAAATAATGGTGAAGAAAAATGACTGGATTTGATCTACCGAACTTTTTCATAATGAGGCTTTTTGRTACAAGAAGACAATAGGACAACATTTTTCGGGTTTTTTTGAAACAAAGAACTTTGCAAAATTTTGAAAAGTGACGTGAAAGTCATTTCATTTTATTCATCGTAGTCATTTTCTTAGAGCAGATGTTCGAAATAGAGAAAGCTGACATAAAAATCATAAAAAATCATGACGAAATGGAGATAAATTTGAATTTTCATGATATTCTGGAGAAATGAAAAAGTTTATATTTGAGAAATGATGATAAATTTCAAAGAATTTTTATAATCAGAGGTTTTGAATAGGCTGTAATTGTGGGGTAAAAACATTGAAGCAAAAGTGTATAATGAGAAAAGAAAATTTTGTTGAGGAGATAAAGATCTAGTCCAAGAAAACTAAGCAGAATTTCATAAATTGTGAACATGGAAATTTTCAAAATTTTCAAAACCATCAAGATTCTCTTTTTCAAACTTAAACTCAGAATTCCCAGAAAATGTCAAGGAATTCAAAAAAAAAATCATTAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 241 177 83</canonical_bands>
                <polymorphic_bands>676 241 83</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAAAATGACTGGATTTGATCT</pcr_primer_p1>
		<pcr_primer_p2>CATGAAAATTCAAATTTATCTCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAAAATGACTGGATTTGATCTACCGAACTTTTTCATAATGAGGCTTTTTGGTACAAGAAGACAATAGGACAACATTTTTCGGGTTTTTTTGAAACAAAGAACTTTGCAAAATTTTGAAAAGTGACGTGAAAGTCATTTCATTTTATTCATCGTAGTCATTTTCTTAGAGCAGATGTTCGAAATAGAGAAAGCTGACATAAAAATCATAAAAAATCATGACGAAATGGAGATAAATTTGAATTTTCATG</canonical_amplicon>
		<polymorphic_amplicon>AGAAAAATGACTGGATTTGATCTACCGAACTTTTTCATAATGAGGCTTTTTGRTACAAGAAGACAATAGGACAACATTTTTCGGGTTTTTTTGAAACAAAGAACTTTGCAAAATTTTGAAAAGTGACGTGAAAGTCATTTCATTTTATTCATCGTAGTCATTTTCTTAGAGCAGATGTTCGAAATAGAGAAAGCTGACATAAAAATCATAAAAAATCATGACGAAATGGAGATAAATTTGAATTTTCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25679</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>268695</contig_pos>
        <strand></strand>
        <context>AAAGTCATTT[C/T]ATTTTATTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGAAACAAAGAACTTTGCAAAATTTTGAAAAGTGACGTGAAAGTCATTT</left_flank>
        <right_flank>ATTTTATTCATCGTAGTCATTTTCTTAGAGCAGATGTTCGAAATAGAGAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGTCTTGTCTCTTGCCCCATTGGACCGGATTTTGATGTTTTTCAGATGAAAAAGAAAGAAAAAAGAAGAAGAAGAAGAAGAAGACAAAGGAAAAAGCATTGAAAGAGCAGAAATTGAATCTGACGGCTCAGGAATAAGAAGGTTACAGAGTACACGGATCAGTTTTTTTTGTAGTCTGAACATTTTTGAAACTTTACAAGAGAAAAATTAAAATACGCTAGGTTCAACCTATGTACAAAGAAAAATCTGAATGTGAGAGAAAAATAATGTGCTACAAAATTATTTTCCATGAGCACGCCCCGGAAAATGGATCTGCCACCCCACGTGCTTCAGAAAAAGTGGGGGAAATAATGGTGAAGAAAAATGACTGGATTTGATCTACCGAACTTTTTCATAATGAGGCTTTTTGGTACAAGAAGACAATAGGACAACATTTTTCGGGTTTTTTTGAAACAAAGAACTTTGCAAAATTTTGAAAAGTGACGTGAAAGTCATTTCATTTTATTCATCGTAGTCATTTTCTTAGAGCAGATGTTCGAAATAGAGAAAGCTGACATAAAAATCATAAAAAATCATGACGAAATGGAGATAAATTTGAATTTTCATGATATTCTGGAGAAATGAAAAAGTTTATATTTGAGAAATGATGATAAATTTCAAAGAATTTTTATAATCAGAGGTTTTGAATAGGCTGTAATTGTGGGGTAAAAACATTGAAGCAAAAGTGTATAATGAGAAAAGAAAATTTTGTTGAGGAGATAAAGATCTAGTCCAAGAAAACTAAGCAGAATTTCATAAATTGTGAACATGGAAATTTTCAAAATTTTCAAAACCATCAAGATTCTCTTTTTCAAACTTAAACTCAGAATTCCCAGAAAATGTCAAGGAATTCAAAAAAAAAATCATTAAGGCCCTCCGAACCGTTCACTTTGAGCTTGATTATCTTGAGTTTTGCACAAGATATCAAATATTTTCAACTGATAAAATATTCACCAGAT</canonical>
            <polymorphic>CCTGTCTTGTCTCTTGCCCCATTGGACCGGATTTTGATGTTTTTCAGATGAAAAAGAAAGAAAAAAGAAGAAGAAGAAGAAGAAGACAAAGGAAAAAGCATTGAAAGAGCAGAAATTGAATCTGACGGCTCAGGAATAAGAAGGTTACAGAGTACACGGATCAGTTTTTTTTGTAGTCTGAACATTTTTGAAACTTTACAAGAGAAAAATTAAAATACGCTAGGTTCAACCTATGTACAAAGAAAAATCTGAATGTGAGAGAAAAATAATGTGCTACAAAATTATTTTCCATGAGCACGCCCCGGAAAATGGATCTGCCACCCCACGTGCTTCAGAAAAAGTGGGGGAAATAATGGTGAAGAAAAATGACTGGATTTGATCTACCGAACTTTTTCATAATGAGGCTTTTTGGTACAAGAAGACAATAGGACAACATTTTTCGGGTTTTTTTGAAACAAAGAACTTTGCAAAATTTTGAAAAGTGACGTGAAAGTCATTTYATTTTATTCATCGTAGTCATTTTCTTAGAGCAGATGTTCGAAATAGAGAAAGCTGACATAAAAATCATAAAAAATCATGACGAAATGGAGATAAATTTGAATTTTCATGATATTCTGGAGAAATGAAAAAGTTTATATTTGAGAAATGATGATAAATTTCAAAGAATTTTTATAATCAGAGGTTTTGAATAGGCTGTAATTGTGGGGTAAAAACATTGAAGCAAAAGTGTATAATGAGAAAAGAAAATTTTGTTGAGGAGATAAAGATCTAGTCCAAGAAAACTAAGCAGAATTTCATAAATTGTGAACATGGAAATTTTCAAAATTTTCAAAACCATCAAGATTCTCTTTTTCAAACTTAAACTCAGAATTCCCAGAAAATGTCAAGGAATTCAAAAAAAAAATCATTAAGGCCCTCCGAACCGTTCACTTTGAGCTTGATTATCTTGAGTTTTGCACAAGATATCAAATATTTTCAACTGATAAAATATTCACCAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAAATGACTGGATTTGATCT</pcr_primer_p1>
		<pcr_primer_p2>CATGAAAATTCAAATTTATCTCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAAAATGACTGGATTTGATCTACCGAACTTTTTCATAATGAGGCTTTTTGGTACAAGAAGACAATAGGACAACATTTTTCGGGTTTTTTTGAAACAAAGAACTTTGCAAAATTTTGAAAAGTGACGTGAAAGTCATTTCATTTTATTCATCGTAGTCATTTTCTTAGAGCAGATGTTCGAAATAGAGAAAGCTGACATAAAAATCATAAAAAATCATGACGAAATGGAGATAAATTTGAATTTTCATG</canonical_amplicon>
		<polymorphic_amplicon>AGAAAAATGACTGGATTTGATCTACCGAACTTTTTCATAATGAGGCTTTTTGGTACAAGAAGACAATAGGACAACATTTTTCGGGTTTTTTTGAAACAAAGAACTTTGCAAAATTTTGAAAAGTGACGTGAAAGTCATTTYATTTTATTCATCGTAGTCATTTTCTTAGAGCAGATGTTCGAAATAGAGAAAGCTGACATAAAAATCATAAAAAATCATGACGAAATGGAGATAAATTTGAATTTTCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25680</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>268723</contig_pos>
        <strand></strand>
        <context>CATTTTCTTA[G/A]AGCAGATGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAAGTGACGTGAAAGTCATTTCATTTTATTCATCGTAGTCATTTTCTTA</left_flank>
        <right_flank>AGCAGATGTTCGAAATAGAGAAAGCTGACATAAAAATCATAAAAAATCAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATTTTGATGTTTTTCAGATGAAAAAGAAAGAAAAAAGAAGAAGAAGAAGAAGAAGACAAAGGAAAAAGCATTGAAAGAGCAGAAATTGAATCTGACGGCTCAGGAATAAGAAGGTTACAGAGTACACGGATCAGTTTTTTTTGTAGTCTGAACATTTTTGAAACTTTACAAGAGAAAAATTAAAATACGCTAGGTTCAACCTATGTACAAAGAAAAATCTGAATGTGAGAGAAAAATAATGTGCTACAAAATTATTTTCCATGAGCACGCCCCGGAAAATGGATCTGCCACCCCACGTGCTTCAGAAAAAGTGGGGGAAATAATGGTGAAGAAAAATGACTGGATTTGATCTACCGAACTTTTTCATAATGAGGCTTTTTGGTACAAGAAGACAATAGGACAACATTTTTCGGGTTTTTTTGAAACAAAGAACTTTGCAAAATTTTGAAAAGTGACGTGAAAGTCATTTCATTTTATTCATCGTAGTCATTTTCTTAGAGCAGATGTTCGAAATAGAGAAAGCTGACATAAAAATCATAAAAAATCATGACGAAATGGAGATAAATTTGAATTTTCATGATATTCTGGAGAAATGAAAAAGTTTATATTTGAGAAATGATGATAAATTTCAAAGAATTTTTATAATCAGAGGTTTTGAATAGGCTGTAATTGTGGGGTAAAAACATTGAAGCAAAAGTGTATAATGAGAAAAGAAAATTTTGTTGAGGAGATAAAGATCTAGTCCAAGAAAACTAAGCAGAATTTCATAAATTGTGAACATGGAAATTTTCAAAATTTTCAAAACCATCAAGATTCTCTTTTTCAAACTTAAACTCAGAATTCCCAGAAAATGTCAAGGAATTCAAAAAAAAAATCATTAAGGCCCTCCGAACCGTTCACTTTGAGCTTGATTATCTTGAGTTTTGCACAAGATATCAAATATTTTCAACTGATAAAATATTCACCAGATTATCATCAACAATTGAACAGTTGGCAAA</canonical>
            <polymorphic>GGATTTTGATGTTTTTCAGATGAAAAAGAAAGAAAAAAGAAGAAGAAGAAGAAGAAGACAAAGGAAAAAGCATTGAAAGAGCAGAAATTGAATCTGACGGCTCAGGAATAAGAAGGTTACAGAGTACACGGATCAGTTTTTTTTGTAGTCTGAACATTTTTGAAACTTTACAAGAGAAAAATTAAAATACGCTAGGTTCAACCTATGTACAAAGAAAAATCTGAATGTGAGAGAAAAATAATGTGCTACAAAATTATTTTCCATGAGCACGCCCCGGAAAATGGATCTGCCACCCCACGTGCTTCAGAAAAAGTGGGGGAAATAATGGTGAAGAAAAATGACTGGATTTGATCTACCGAACTTTTTCATAATGAGGCTTTTTGGTACAAGAAGACAATAGGACAACATTTTTCGGGTTTTTTTGAAACAAAGAACTTTGCAAAATTTTGAAAAGTGACGTGAAAGTCATTTCATTTTATTCATCGTAGTCATTTTCTTARAGCAGATGTTCGAAATAGAGAAAGCTGACATAAAAATCATAAAAAATCATGACGAAATGGAGATAAATTTGAATTTTCATGATATTCTGGAGAAATGAAAAAGTTTATATTTGAGAAATGATGATAAATTTCAAAGAATTTTTATAATCAGAGGTTTTGAATAGGCTGTAATTGTGGGGTAAAAACATTGAAGCAAAAGTGTATAATGAGAAAAGAAAATTTTGTTGAGGAGATAAAGATCTAGTCCAAGAAAACTAAGCAGAATTTCATAAATTGTGAACATGGAAATTTTCAAAATTTTCAAAACCATCAAGATTCTCTTTTTCAAACTTAAACTCAGAATTCCCAGAAAATGTCAAGGAATTCAAAAAAAAAATCATTAAGGCCCTCCGAACCGTTCACTTTGAGCTTGATTATCTTGAGTTTTGCACAAGATATCAAATATTTTCAACTGATAAAATATTCACCAGATTATCATCAACAATTGAACAGTTGGCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>395 259 164 101 81</canonical_bands>
                <polymorphic_bands>654 164 101 81</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAAAATGACTGGATTTGATCT</pcr_primer_p1>
		<pcr_primer_p2>CATGAAAATTCAAATTTATCTCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAAAATGACTGGATTTGATCTACCGAACTTTTTCATAATGAGGCTTTTTGGTACAAGAAGACAATAGGACAACATTTTTCGGGTTTTTTTGAAACAAAGAACTTTGCAAAATTTTGAAAAGTGACGTGAAAGTCATTTCATTTTATTCATCGTAGTCATTTTCTTAGAGCAGATGTTCGAAATAGAGAAAGCTGACATAAAAATCATAAAAAATCATGACGAAATGGAGATAAATTTGAATTTTCATG</canonical_amplicon>
		<polymorphic_amplicon>AGAAAAATGACTGGATTTGATCTACCGAACTTTTTCATAATGAGGCTTTTTGGTACAAGAAGACAATAGGACAACATTTTTCGGGTTTTTTTGAAACAAAGAACTTTGCAAAATTTTGAAAAGTGACGTGAAAGTCATTTCATTTTATTCATCGTAGTCATTTTCTTARAGCAGATGTTCGAAATAGAGAAAGCTGACATAAAAATCATAAAAAATCATGACGAAATGGAGATAAATTTGAATTTTCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25681</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>280643</contig_pos>
        <strand>+</strand>
        <context>GAAATTTTTC[A/G]AAAAAAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTC</left_flank>
        <right_flank>AAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCAACATTTTCATATGTTACAGATATTTGATATCTCATATAGAATTTGAGATAATTGAGCTCAAAATGTTTATAACTCTCTTTTAACTCACATGGTCTATAACAGCAATTTTTAAACACTCCAATTCTTGAATCAATGGGACCAAAAAAATTCTAAGATTTTAAAAACGGAACAAACACGAAAAGCTTTATGGCGGACCAAAAAAACGTACCCAACCTCTAAGAACAACCACGGAAAAATAGGTCACAAGAAATCTCTTATTTTGTGCATGTGGAAATAATTTTTTTAGTTAATTCAGGAAAATTGCACACAAAACAATTAGGCCAATAACAAGGGTAAAAGTTTTCATTAAAGGAAAATCCTTGAAAAAATTGAAAATTTCCTTTTATTCTTCGAAAAAAAACCGATCTCACATTCGCCCGTTCCATTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCATCGAGAATGTAAGAAACAATATTTTCTGAAAATGGGCGGAGCTTGAAAAAAATTATAGTTAAGGTTCCCGAGGGTGTGTAGGTGTAGTGATGAGAAGACATAATAGTTTGTATGATCAAATGATATGATTAGATTTTTGAAATATTAACAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTAAAAGAAGAGAG</canonical>
            <polymorphic>GATCAACATTTTCATATGTTACAGATATTTGATATCTCATATAGAATTTGAGATAATTGAGCTCAAAATGTTTATAACTCTCTTTTAACTCACATGGTCTATAACAGCAATTTTTAAACACTCCAATTCTTGAATCAATGGGACCAAAAAAATTCTAAGATTTTAAAAACGGAACAAACACGAAAAGCTTTATGGCGGACCAAAAAAACGTACCCAACCTCTAAGAACAACCACGGAAAAATAGGTCACAAGAAATCTCTTATTTTGTGCATGTGGAAATAATTTTTTTAGTTAATTCAGGAAAATTGCACACAAAACAATTAGGCCAATAACAAGGGTAAAAGTTTTCATTAAAGGAAAATCCTTGAAAAAATTGAAAATTTCCTTTTATTCTTCGAAAAAAAACCGATCTCACATTCGCCCGTTCCATTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCRAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCATCGAGAATGTAAGAAACAATATTTTCTGAAAATGGGCGGAGCTTGAAAAAAATTATAGTTAAGGTTCCCGAGGGTGTGTAGGTGTAGTGATGAGAAGACATAATAGTTTGTATGATCAAATGATATGATTAGATTTTTGAAATATTAACAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTAAAAGAAGAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGACCAAATTATGAATGAGTCT</pcr_primer_p1>
		<pcr_primer_p2>TGACCTATGTATTATGCTCGTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCA</canonical_amplicon>
		<polymorphic_amplicon>TTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCRAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25682</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>280657</contig_pos>
        <strand></strand>
        <context>AAAATTTTTT[A/G]CCGTTCAGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTT</left_flank>
        <right_flank>CCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAA</right_flank>
        <qual_score>35</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGTTACAGATATTTGATATCTCATATAGAATTTGAGATAATTGAGCTCAAAATGTTTATAACTCTCTTTTAACTCACATGGTCTATAACAGCAATTTTTAAACACTCCAATTCTTGAATCAATGGGACCAAAAAAATTCTAAGATTTTAAAAACGGAACAAACACGAAAAGCTTTATGGCGGACCAAAAAAACGTACCCAACCTCTAAGAACAACCACGGAAAAATAGGTCACAAGAAATCTCTTATTTTGTGCATGTGGAAATAATTTTTTTAGTTAATTCAGGAAAATTGCACACAAAACAATTAGGCCAATAACAAGGGTAAAAGTTTTCATTAAAGGAAAATCCTTGAAAAAATTGAAAATTTCCTTTTATTCTTCGAAAAAAAACCGATCTCACATTCGCCCGTTCCATTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCATCGAGAATGTAAGAAACAATATTTTCTGAAAATGGGCGGAGCTTGAAAAAAATTATAGTTAAGGTTCCCGAGGGTGTGTAGGTGTAGTGATGAGAAGACATAATAGTTTGTATGATCAAATGATATGATTAGATTTTTGAAATATTAACAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTAAAAGAAGAGAGAAGTACAGTATATT</canonical>
            <polymorphic>TATGTTACAGATATTTGATATCTCATATAGAATTTGAGATAATTGAGCTCAAAATGTTTATAACTCTCTTTTAACTCACATGGTCTATAACAGCAATTTTTAAACACTCCAATTCTTGAATCAATGGGACCAAAAAAATTCTAAGATTTTAAAAACGGAACAAACACGAAAAGCTTTATGGCGGACCAAAAAAACGTACCCAACCTCTAAGAACAACCACGGAAAAATAGGTCACAAGAAATCTCTTATTTTGTGCATGTGGAAATAATTTTTTTAGTTAATTCAGGAAAATTGCACACAAAACAATTAGGCCAATAACAAGGGTAAAAGTTTTCATTAAAGGAAAATCCTTGAAAAAATTGAAAATTTCCTTTTATTCTTCGAAAAAAAACCGATCTCACATTCGCCCGTTCCATTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTRCCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCATCGAGAATGTAAGAAACAATATTTTCTGAAAATGGGCGGAGCTTGAAAAAAATTATAGTTAAGGTTCCCGAGGGTGTGTAGGTGTAGTGATGAGAAGACATAATAGTTTGTATGATCAAATGATATGATTAGATTTTTGAAATATTAACAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTAAAAGAAGAGAGAAGTACAGTATATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>502 365 126 7</canonical_bands>
                <polymorphic_bands>867 126 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGACCAAATTATGAATGAGTCT</pcr_primer_p1>
		<pcr_primer_p2>TGACCTATGTATTATGCTCGTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCA</canonical_amplicon>
		<polymorphic_amplicon>TTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTRCCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25683</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>280712</contig_pos>
        <strand>+</strand>
        <context>GAGAAAAGGG[G/T]AACGGARRAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGG</left_flank>
        <right_flank>AACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTATAACTCTCTTTTAACTCACATGGTCTATAACAGCAATTTTTAAACACTCCAATTCTTGAATCAATGGGACCAAAAAAATTCTAAGATTTTAAAAACGGAACAAACACGAAAAGCTTTATGGCGGACCAAAAAAACGTACCCAACCTCTAAGAACAACCACGGAAAAATAGGTCACAAGAAATCTCTTATTTTGTGCATGTGGAAATAATTTTTTTAGTTAATTCAGGAAAATTGCACACAAAACAATTAGGCCAATAACAAGGGTAAAAGTTTTCATTAAAGGAAAATCCTTGAAAAAATTGAAAATTTCCTTTTATTCTTCGAAAAAAAACCGATCTCACATTCGCCCGTTCCATTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCATCGAGAATGTAAGAAACAATATTTTCTGAAAATGGGCGGAGCTTGAAAAAAATTATAGTTAAGGTTCCCGAGGGTGTGTAGGTGTAGTGATGAGAAGACATAATAGTTTGTATGATCAAATGATATGATTAGATTTTTGAAATATTAACAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTAAAAGAAGAGAGAAGTACAGTATATTCATCTTACCTTTATTACACAATCCCACCATTTTCATCTTTAAAATTAGAAGCTAC</canonical>
            <polymorphic>GTTTATAACTCTCTTTTAACTCACATGGTCTATAACAGCAATTTTTAAACACTCCAATTCTTGAATCAATGGGACCAAAAAAATTCTAAGATTTTAAAAACGGAACAAACACGAAAAGCTTTATGGCGGACCAAAAAAACGTACCCAACCTCTAAGAACAACCACGGAAAAATAGGTCACAAGAAATCTCTTATTTTGTGCATGTGGAAATAATTTTTTTAGTTAATTCAGGAAAATTGCACACAAAACAATTAGGCCAATAACAAGGGTAAAAGTTTTCATTAAAGGAAAATCCTTGAAAAAATTGAAAATTTCCTTTTATTCTTCGAAAAAAAACCGATCTCACATTCGCCCGTTCCATTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGKAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCATCGAGAATGTAAGAAACAATATTTTCTGAAAATGGGCGGAGCTTGAAAAAAATTATAGTTAAGGTTCCCGAGGGTGTGTAGGTGTAGTGATGAGAAGACATAATAGTTTGTATGATCAAATGATATGATTAGATTTTTGAAATATTAACAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTAAAAGAAGAGAGAAGTACAGTATATTCATCTTACCTTTATTACACAATCCCACCATTTTCATCTTTAAAATTAGAAGCTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>480 323 175 22</canonical_bands>
                <polymorphic_bands>480 345 175</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGACCAAATTATGAATGAGTCT</pcr_primer_p1>
		<pcr_primer_p2>TGACCTATGTATTATGCTCGTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCA</canonical_amplicon>
		<polymorphic_amplicon>TTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGKAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25684</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>280719</contig_pos>
        <strand></strand>
        <context>GGGKAACGGA[A/G]RAATAYYATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGA</left_flank>
        <right_flank>AAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAA</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCTCTTTTAACTCACATGGTCTATAACAGCAATTTTTAAACACTCCAATTCTTGAATCAATGGGACCAAAAAAATTCTAAGATTTTAAAAACGGAACAAACACGAAAAGCTTTATGGCGGACCAAAAAAACGTACCCAACCTCTAAGAACAACCACGGAAAAATAGGTCACAAGAAATCTCTTATTTTGTGCATGTGGAAATAATTTTTTTAGTTAATTCAGGAAAATTGCACACAAAACAATTAGGCCAATAACAAGGGTAAAAGTTTTCATTAAAGGAAAATCCTTGAAAAAATTGAAAATTTCCTTTTATTCTTCGAAAAAAAACCGATCTCACATTCGCCCGTTCCATTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCATCGAGAATGTAAGAAACAATATTTTCTGAAAATGGGCGGAGCTTGAAAAAAATTATAGTTAAGGTTCCCGAGGGTGTGTAGGTGTAGTGATGAGAAGACATAATAGTTTGTATGATCAAATGATATGATTAGATTTTTGAAATATTAACAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTAAAAGAAGAGAGAAGTACAGTATATTCATCTTACCTTTATTACACAATCCCACCATTTTCATCTTTAAAATTAGAAGCTACGAGCAAA</canonical>
            <polymorphic>ACTCTCTTTTAACTCACATGGTCTATAACAGCAATTTTTAAACACTCCAATTCTTGAATCAATGGGACCAAAAAAATTCTAAGATTTTAAAAACGGAACAAACACGAAAAGCTTTATGGCGGACCAAAAAAACGTACCCAACCTCTAAGAACAACCACGGAAAAATAGGTCACAAGAAATCTCTTATTTTGTGCATGTGGAAATAATTTTTTTAGTTAATTCAGGAAAATTGCACACAAAACAATTAGGCCAATAACAAGGGTAAAAGTTTTCATTAAAGGAAAATCCTTGAAAAAATTGAAAATTTCCTTTTATTCTTCGAAAAAAAACCGATCTCACATTCGCCCGTTCCATTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGARAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCATCGAGAATGTAAGAAACAATATTTTCTGAAAATGGGCGGAGCTTGAAAAAAATTATAGTTAAGGTTCCCGAGGGTGTGTAGGTGTAGTGATGAGAAGACATAATAGTTTGTATGATCAAATGATATGATTAGATTTTTGAAATATTAACAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTAAAAGAAGAGAGAAGTACAGTATATTCATCTTACCTTTATTACACAATCCCACCATTTTCATCTTTAAAATTAGAAGCTACGAGCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGACCAAATTATGAATGAGTCT</pcr_primer_p1>
		<pcr_primer_p2>TGACCTATGTATTATGCTCGTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCA</canonical_amplicon>
		<polymorphic_amplicon>TTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGARAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25685</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>280720</contig_pos>
        <strand>+</strand>
        <context>GGKAACGGAR[A/G]AATAYYATCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAA</left_flank>
        <right_flank>AATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTCTTTTAACTCACATGGTCTATAACAGCAATTTTTAAACACTCCAATTCTTGAATCAATGGGACCAAAAAAATTCTAAGATTTTAAAAACGGAACAAACACGAAAAGCTTTATGGCGGACCAAAAAAACGTACCCAACCTCTAAGAACAACCACGGAAAAATAGGTCACAAGAAATCTCTTATTTTGTGCATGTGGAAATAATTTTTTTAGTTAATTCAGGAAAATTGCACACAAAACAATTAGGCCAATAACAAGGGTAAAAGTTTTCATTAAAGGAAAATCCTTGAAAAAATTGAAAATTTCCTTTTATTCTTCGAAAAAAAACCGATCTCACATTCGCCCGTTCCATTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCATCGAGAATGTAAGAAACAATATTTTCTGAAAATGGGCGGAGCTTGAAAAAAATTATAGTTAAGGTTCCCGAGGGTGTGTAGGTGTAGTGATGAGAAGACATAATAGTTTGTATGATCAAATGATATGATTAGATTTTTGAAATATTAACAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTAAAAGAAGAGAGAAGTACAGTATATTCATCTTACCTTTATTACACAATCCCACCATTTTCATCTTTAAAATTAGAAGCTACGAGCAAAC</canonical>
            <polymorphic>CTCTCTTTTAACTCACATGGTCTATAACAGCAATTTTTAAACACTCCAATTCTTGAATCAATGGGACCAAAAAAATTCTAAGATTTTAAAAACGGAACAAACACGAAAAGCTTTATGGCGGACCAAAAAAACGTACCCAACCTCTAAGAACAACCACGGAAAAATAGGTCACAAGAAATCTCTTATTTTGTGCATGTGGAAATAATTTTTTTAGTTAATTCAGGAAAATTGCACACAAAACAATTAGGCCAATAACAAGGGTAAAAGTTTTCATTAAAGGAAAATCCTTGAAAAAATTGAAAATTTCCTTTTATTCTTCGAAAAAAAACCGATCTCACATTCGCCCGTTCCATTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAARAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCATCGAGAATGTAAGAAACAATATTTTCTGAAAATGGGCGGAGCTTGAAAAAAATTATAGTTAAGGTTCCCGAGGGTGTGTAGGTGTAGTGATGAGAAGACATAATAGTTTGTATGATCAAATGATATGATTAGATTTTTGAAATATTAACAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTAAAAGAAGAGAGAAGTACAGTATATTCATCTTACCTTTATTACACAATCCCACCATTTTCATCTTTAAAATTAGAAGCTACGAGCAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGACCAAATTATGAATGAGTCT</pcr_primer_p1>
		<pcr_primer_p2>TGACCTATGTATTATGCTCGTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCA</canonical_amplicon>
		<polymorphic_amplicon>TTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAARAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25686</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>280725</contig_pos>
        <strand></strand>
        <context>CGGARRAATA[C/T]YATCAATGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATA</left_flank>
        <right_flank>AATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTAACTCACATGGTCTATAACAGCAATTTTTAAACACTCCAATTCTTGAATCAATGGGACCAAAAAAATTCTAAGATTTTAAAAACGGAACAAACACGAAAAGCTTTATGGCGGACCAAAAAAACGTACCCAACCTCTAAGAACAACCACGGAAAAATAGGTCACAAGAAATCTCTTATTTTGTGCATGTGGAAATAATTTTTTTAGTTAATTCAGGAAAATTGCACACAAAACAATTAGGCCAATAACAAGGGTAAAAGTTTTCATTAAAGGAAAATCCTTGAAAAAATTGAAAATTTCCTTTTATTCTTCGAAAAAAAACCGATCTCACATTCGCCCGTTCCATTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCATCGAGAATGTAAGAAACAATATTTTCTGAAAATGGGCGGAGCTTGAAAAAAATTATAGTTAAGGTTCCCGAGGGTGTGTAGGTGTAGTGATGAGAAGACATAATAGTTTGTATGATCAAATGATATGATTAGATTTTTGAAATATTAACAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTAAAAGAAGAGAGAAGTACAGTATATTCATCTTACCTTTATTACACAATCCCACCATTTTCATCTTTAAAATTAGAAGCTACGAGCAAACGTTTG</canonical>
            <polymorphic>TTTTAACTCACATGGTCTATAACAGCAATTTTTAAACACTCCAATTCTTGAATCAATGGGACCAAAAAAATTCTAAGATTTTAAAAACGGAACAAACACGAAAAGCTTTATGGCGGACCAAAAAAACGTACCCAACCTCTAAGAACAACCACGGAAAAATAGGTCACAAGAAATCTCTTATTTTGTGCATGTGGAAATAATTTTTTTAGTTAATTCAGGAAAATTGCACACAAAACAATTAGGCCAATAACAAGGGTAAAAGTTTTCATTAAAGGAAAATCCTTGAAAAAATTGAAAATTTCCTTTTATTCTTCGAAAAAAAACCGATCTCACATTCGCCCGTTCCATTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATAYAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCATCGAGAATGTAAGAAACAATATTTTCTGAAAATGGGCGGAGCTTGAAAAAAATTATAGTTAAGGTTCCCGAGGGTGTGTAGGTGTAGTGATGAGAAGACATAATAGTTTGTATGATCAAATGATATGATTAGATTTTTGAAATATTAACAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTAAAAGAAGAGAGAAGTACAGTATATTCATCTTACCTTTATTACACAATCCCACCATTTTCATCTTTAAAATTAGAAGCTACGAGCAAACGTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGACCAAATTATGAATGAGTCT</pcr_primer_p1>
		<pcr_primer_p2>TGACCTATGTATTATGCTCGTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCA</canonical_amplicon>
		<polymorphic_amplicon>TTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATAYAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25687</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>280726</contig_pos>
        <strand>+</strand>
        <context>GGARRAATAY[C/T]ATCAATGTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATAC</left_flank>
        <right_flank>ATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAACTCACATGGTCTATAACAGCAATTTTTAAACACTCCAATTCTTGAATCAATGGGACCAAAAAAATTCTAAGATTTTAAAAACGGAACAAACACGAAAAGCTTTATGGCGGACCAAAAAAACGTACCCAACCTCTAAGAACAACCACGGAAAAATAGGTCACAAGAAATCTCTTATTTTGTGCATGTGGAAATAATTTTTTTAGTTAATTCAGGAAAATTGCACACAAAACAATTAGGCCAATAACAAGGGTAAAAGTTTTCATTAAAGGAAAATCCTTGAAAAAATTGAAAATTTCCTTTTATTCTTCGAAAAAAAACCGATCTCACATTCGCCCGTTCCATTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCATCGAGAATGTAAGAAACAATATTTTCTGAAAATGGGCGGAGCTTGAAAAAAATTATAGTTAAGGTTCCCGAGGGTGTGTAGGTGTAGTGATGAGAAGACATAATAGTTTGTATGATCAAATGATATGATTAGATTTTTGAAATATTAACAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTAAAAGAAGAGAGAAGTACAGTATATTCATCTTACCTTTATTACACAATCCCACCATTTTCATCTTTAAAATTAGAAGCTACGAGCAAACGTTTGG</canonical>
            <polymorphic>TTTAACTCACATGGTCTATAACAGCAATTTTTAAACACTCCAATTCTTGAATCAATGGGACCAAAAAAATTCTAAGATTTTAAAAACGGAACAAACACGAAAAGCTTTATGGCGGACCAAAAAAACGTACCCAACCTCTAAGAACAACCACGGAAAAATAGGTCACAAGAAATCTCTTATTTTGTGCATGTGGAAATAATTTTTTTAGTTAATTCAGGAAAATTGCACACAAAACAATTAGGCCAATAACAAGGGTAAAAGTTTTCATTAAAGGAAAATCCTTGAAAAAATTGAAAATTTCCTTTTATTCTTCGAAAAAAAACCGATCTCACATTCGCCCGTTCCATTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACYATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCATCGAGAATGTAAGAAACAATATTTTCTGAAAATGGGCGGAGCTTGAAAAAAATTATAGTTAAGGTTCCCGAGGGTGTGTAGGTGTAGTGATGAGAAGACATAATAGTTTGTATGATCAAATGATATGATTAGATTTTTGAAATATTAACAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTAAAAGAAGAGAGAAGTACAGTATATTCATCTTACCTTTATTACACAATCCCACCATTTTCATCTTTAAAATTAGAAGCTACGAGCAAACGTTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGACCAAATTATGAATGAGTCT</pcr_primer_p1>
		<pcr_primer_p2>TGACCTATGTATTATGCTCGTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCA</canonical_amplicon>
		<polymorphic_amplicon>TTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACYATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25688</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>280762</contig_pos>
        <strand>+</strand>
        <context>AAACGTTGAG[C/T]RAAAAAAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAG</left_flank>
        <right_flank>GAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCCAATTCTTGAATCAATGGGACCAAAAAAATTCTAAGATTTTAAAAACGGAACAAACACGAAAAGCTTTATGGCGGACCAAAAAAACGTACCCAACCTCTAAGAACAACCACGGAAAAATAGGTCACAAGAAATCTCTTATTTTGTGCATGTGGAAATAATTTTTTTAGTTAATTCAGGAAAATTGCACACAAAACAATTAGGCCAATAACAAGGGTAAAAGTTTTCATTAAAGGAAAATCCTTGAAAAAATTGAAAATTTCCTTTTATTCTTCGAAAAAAAACCGATCTCACATTCGCCCGTTCCATTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCATCGAGAATGTAAGAAACAATATTTTCTGAAAATGGGCGGAGCTTGAAAAAAATTATAGTTAAGGTTCCCGAGGGTGTGTAGGTGTAGTGATGAGAAGACATAATAGTTTGTATGATCAAATGATATGATTAGATTTTTGAAATATTAACAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTAAAAGAAGAGAGAAGTACAGTATATTCATCTTACCTTTATTACACAATCCCACCATTTTCATCTTTAAAATTAGAAGCTACGAGCAAACGTTTGGGTGCAAAATCTGAAACCAGAAACAAAGCGATGCGGC</canonical>
            <polymorphic>ACTCCAATTCTTGAATCAATGGGACCAAAAAAATTCTAAGATTTTAAAAACGGAACAAACACGAAAAGCTTTATGGCGGACCAAAAAAACGTACCCAACCTCTAAGAACAACCACGGAAAAATAGGTCACAAGAAATCTCTTATTTTGTGCATGTGGAAATAATTTTTTTAGTTAATTCAGGAAAATTGCACACAAAACAATTAGGCCAATAACAAGGGTAAAAGTTTTCATTAAAGGAAAATCCTTGAAAAAATTGAAAATTTCCTTTTATTCTTCGAAAAAAAACCGATCTCACATTCGCCCGTTCCATTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGYGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCATCGAGAATGTAAGAAACAATATTTTCTGAAAATGGGCGGAGCTTGAAAAAAATTATAGTTAAGGTTCCCGAGGGTGTGTAGGTGTAGTGATGAGAAGACATAATAGTTTGTATGATCAAATGATATGATTAGATTTTTGAAATATTAACAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTAAAAGAAGAGAGAAGTACAGTATATTCATCTTACCTTTATTACACAATCCCACCATTTTCATCTTTAAAATTAGAAGCTACGAGCAAACGTTTGGGTGCAAAATCTGAAACCAGAAACAAAGCGATGCGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGACCAAATTATGAATGAGTCT</pcr_primer_p1>
		<pcr_primer_p2>TGACCTATGTATTATGCTCGTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCA</canonical_amplicon>
		<polymorphic_amplicon>TTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGYGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25689</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>280763</contig_pos>
        <strand>+</strand>
        <context>AACGTTGAGY[A/G]AAAAAAGTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGA</left_flank>
        <right_flank>AAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCAATTCTTGAATCAATGGGACCAAAAAAATTCTAAGATTTTAAAAACGGAACAAACACGAAAAGCTTTATGGCGGACCAAAAAAACGTACCCAACCTCTAAGAACAACCACGGAAAAATAGGTCACAAGAAATCTCTTATTTTGTGCATGTGGAAATAATTTTTTTAGTTAATTCAGGAAAATTGCACACAAAACAATTAGGCCAATAACAAGGGTAAAAGTTTTCATTAAAGGAAAATCCTTGAAAAAATTGAAAATTTCCTTTTATTCTTCGAAAAAAAACCGATCTCACATTCGCCCGTTCCATTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCATCGAGAATGTAAGAAACAATATTTTCTGAAAATGGGCGGAGCTTGAAAAAAATTATAGTTAAGGTTCCCGAGGGTGTGTAGGTGTAGTGATGAGAAGACATAATAGTTTGTATGATCAAATGATATGATTAGATTTTTGAAATATTAACAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTAAAAGAAGAGAGAAGTACAGTATATTCATCTTACCTTTATTACACAATCCCACCATTTTCATCTTTAAAATTAGAAGCTACGAGCAAACGTTTGGGTGCAAAATCTGAAACCAGAAACAAAGCGATGCGGCA</canonical>
            <polymorphic>CTCCAATTCTTGAATCAATGGGACCAAAAAAATTCTAAGATTTTAAAAACGGAACAAACACGAAAAGCTTTATGGCGGACCAAAAAAACGTACCCAACCTCTAAGAACAACCACGGAAAAATAGGTCACAAGAAATCTCTTATTTTGTGCATGTGGAAATAATTTTTTTAGTTAATTCAGGAAAATTGCACACAAAACAATTAGGCCAATAACAAGGGTAAAAGTTTTCATTAAAGGAAAATCCTTGAAAAAATTGAAAATTTCCTTTTATTCTTCGAAAAAAAACCGATCTCACATTCGCCCGTTCCATTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGARAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCATCGAGAATGTAAGAAACAATATTTTCTGAAAATGGGCGGAGCTTGAAAAAAATTATAGTTAAGGTTCCCGAGGGTGTGTAGGTGTAGTGATGAGAAGACATAATAGTTTGTATGATCAAATGATATGATTAGATTTTTGAAATATTAACAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTAAAAGAAGAGAGAAGTACAGTATATTCATCTTACCTTTATTACACAATCCCACCATTTTCATCTTTAAAATTAGAAGCTACGAGCAAACGTTTGGGTGCAAAATCTGAAACCAGAAACAAAGCGATGCGGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGACCAAATTATGAATGAGTCT</pcr_primer_p1>
		<pcr_primer_p2>TGACCTATGTATTATGCTCGTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCA</canonical_amplicon>
		<polymorphic_amplicon>TTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGARAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25690</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>280775</contig_pos>
        <strand></strand>
        <context>AAAAAGTTCA[T/C]GAAAATTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCA</left_flank>
        <right_flank>GAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCATCGA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCAATGGGACCAAAAAAATTCTAAGATTTTAAAAACGGAACAAACACGAAAAGCTTTATGGCGGACCAAAAAAACGTACCCAACCTCTAAGAACAACCACGGAAAAATAGGTCACAAGAAATCTCTTATTTTGTGCATGTGGAAATAATTTTTTTAGTTAATTCAGGAAAATTGCACACAAAACAATTAGGCCAATAACAAGGGTAAAAGTTTTCATTAAAGGAAAATCCTTGAAAAAATTGAAAATTTCCTTTTATTCTTCGAAAAAAAACCGATCTCACATTCGCCCGTTCCATTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCATCGAGAATGTAAGAAACAATATTTTCTGAAAATGGGCGGAGCTTGAAAAAAATTATAGTTAAGGTTCCCGAGGGTGTGTAGGTGTAGTGATGAGAAGACATAATAGTTTGTATGATCAAATGATATGATTAGATTTTTGAAATATTAACAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTAAAAGAAGAGAGAAGTACAGTATATTCATCTTACCTTTATTACACAATCCCACCATTTTCATCTTTAAAATTAGAAGCTACGAGCAAACGTTTGGGTGCAAAATCTGAAACCAGAAACAAAGCGATGCGGCATCTCATTTCTAA</canonical>
            <polymorphic>AATCAATGGGACCAAAAAAATTCTAAGATTTTAAAAACGGAACAAACACGAAAAGCTTTATGGCGGACCAAAAAAACGTACCCAACCTCTAAGAACAACCACGGAAAAATAGGTCACAAGAAATCTCTTATTTTGTGCATGTGGAAATAATTTTTTTAGTTAATTCAGGAAAATTGCACACAAAACAATTAGGCCAATAACAAGGGTAAAAGTTTTCATTAAAGGAAAATCCTTGAAAAAATTGAAAATTTCCTTTTATTCTTCGAAAAAAAACCGATCTCACATTCGCCCGTTCCATTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCAYGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCATCGAGAATGTAAGAAACAATATTTTCTGAAAATGGGCGGAGCTTGAAAAAAATTATAGTTAAGGTTCCCGAGGGTGTGTAGGTGTAGTGATGAGAAGACATAATAGTTTGTATGATCAAATGATATGATTAGATTTTTGAAATATTAACAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTAAAAGAAGAGAGAAGTACAGTATATTCATCTTACCTTTATTACACAATCCCACCATTTTCATCTTTAAAATTAGAAGCTACGAGCAAACGTTTGGGTGCAAAATCTGAAACCAGAAACAAAGCGATGCGGCATCTCATTTCTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 360 138</canonical_bands>
                <polymorphic_bands>862 138</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTGGTTCTCAAGTGTTCTCT</pcr_primer_p1>
		<pcr_primer_p2>CTTCTCATCACTACACCTACACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCATCGAGAATGTAAGAAACAATATTTTCTGAAAATGGGCGGAGCTTGAAAAAAATTATAGTTAAGGTTCCCGAGGGTGTGTAGGTGTAGTGATGAGAAG</canonical_amplicon>
		<polymorphic_amplicon>GAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCAYGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCATCGAGAATGTAAGAAACAATATTTTCTGAAAATGGGCGGAGCTTGAAAAAAATTATAGTTAAGGTTCCCGAGGGTGTGTAGGTGTAGTGATGAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25691</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>280969</contig_pos>
        <strand>+</strand>
        <context>TGAAATATTA[A/G]CAAACATCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATAATAGTTTGTATGATCAAATGATATGATTAGATTTTTGAAATATTA</left_flank>
        <right_flank>CAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATAACAAGGGTAAAAGTTTTCATTAAAGGAAAATCCTTGAAAAAATTGAAAATTTCCTTTTATTCTTCGAAAAAAAACCGATCTCACATTCGCCCGTTCCATTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCATCGAGAATGTAAGAAACAATATTTTCTGAAAATGGGCGGAGCTTGAAAAAAATTATAGTTAAGGTTCCCGAGGGTGTGTAGGTGTAGTGATGAGAAGACATAATAGTTTGTATGATCAAATGATATGATTAGATTTTTGAAATATTAACAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTAAAAGAAGAGAGAAGTACAGTATATTCATCTTACCTTTATTACACAATCCCACCATTTTCATCTTTAAAATTAGAAGCTACGAGCAAACGTTTGGGTGCAAAATCTGAAACCAGAAACAAAGCGATGCGGCATCTCATTTCTAATTTCAGTGGGTTTCTTCTTCCGTGTATTCTCTTTTTCTTCTCATTCTCTATCTTGCACATTCCTCCTCAACGTTTTTTTTTGCTGGATGGAATAGAAGAGACACTGAATAAGCCGGATATCAACAAATTTGTGTCTCAAGACAGATATATCAAATTACGGGTCTTTAAATCCGCCACCACCGGATCAGCTGGTG</canonical>
            <polymorphic>CAATAACAAGGGTAAAAGTTTTCATTAAAGGAAAATCCTTGAAAAAATTGAAAATTTCCTTTTATTCTTCGAAAAAAAACCGATCTCACATTCGCCCGTTCCATTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCATCGAGAATGTAAGAAACAATATTTTCTGAAAATGGGCGGAGCTTGAAAAAAATTATAGTTAAGGTTCCCGAGGGTGTGTAGGTGTAGTGATGAGAAGACATAATAGTTTGTATGATCAAATGATATGATTAGATTTTTGAAATATTARCAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTAAAAGAAGAGAGAAGTACAGTATATTCATCTTACCTTTATTACACAATCCCACCATTTTCATCTTTAAAATTAGAAGCTACGAGCAAACGTTTGGGTGCAAAATCTGAAACCAGAAACAAAGCGATGCGGCATCTCATTTCTAATTTCAGTGGGTTTCTTCTTCCGTGTATTCTCTTTTTCTTCTCATTCTCTATCTTGCACATTCCTCCTCAACGTTTTTTTTTGCTGGATGGAATAGAAGAGACACTGAATAAGCCGGATATCAACAAATTTGTGTCTCAAGACAGATATATCAAATTACGGGTCTTTAAATCCGCCACCACCGGATCAGCTGGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>386 244 195 86 29 28 25 7</canonical_bands>
                <polymorphic_bands>386 244 195 114 29 25 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACGAATGACTAACGAGCATAAT</pcr_primer_p1>
		<pcr_primer_p2>TGAATCACAGTTTATGATGATATG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TACGAATGACTAACGAGCATAATACATAGGTCATCGAGAATGTAAGAAACAATATTTTCTGAAAATGGGCGGAGCTTGAAAAAAATTATAGTTAAGGTTCCCGAGGGTGTGTAGGTGTAGTGATGAGAAGACATAATAGTTTGTATGATCAAATGATATGATTAGATTTTTGAAATATTAACAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCA</canonical_amplicon>
		<polymorphic_amplicon>TACGAATGACTAACGAGCATAATACATAGGTCATCGAGAATGTAAGAAACAATATTTTCTGAAAATGGGCGGAGCTTGAAAAAAATTATAGTTAAGGTTCCCGAGGGTGTGTAGGTGTAGTGATGAGAAGACATAATAGTTTGTATGATCAAATGATATGATTAGATTTTTGAAATATTARCAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25692</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>281037</contig_pos>
        <strand>+</strand>
        <context>GATTCATAAC[C/G]AGTGTTTAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAAC</left_flank>
        <right_flank>AGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGAAAAAAAACCGATCTCACATTCGCCCGTTCCATTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCATCGAGAATGTAAGAAACAATATTTTCTGAAAATGGGCGGAGCTTGAAAAAAATTATAGTTAAGGTTCCCGAGGGTGTGTAGGTGTAGTGATGAGAAGACATAATAGTTTGTATGATCAAATGATATGATTAGATTTTTGAAATATTAACAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTAAAAGAAGAGAGAAGTACAGTATATTCATCTTACCTTTATTACACAATCCCACCATTTTCATCTTTAAAATTAGAAGCTACGAGCAAACGTTTGGGTGCAAAATCTGAAACCAGAAACAAAGCGATGCGGCATCTCATTTCTAATTTCAGTGGGTTTCTTCTTCCGTGTATTCTCTTTTTCTTCTCATTCTCTATCTTGCACATTCCTCCTCAACGTTTTTTTTTGCTGGATGGAATAGAAGAGACACTGAATAAGCCGGATATCAACAAATTTGTGTCTCAAGACAGATATATCAAATTACGGGTCTTTAAATCCGCCACCACCGGATCAGCTGGTGGTGGTAGGAAAATGAGAGAAGTTGGGAGATGTAGAGAGAAAAAAGATGAAACAATTTTTCTAATTTCG</canonical>
            <polymorphic>TCGAAAAAAAACCGATCTCACATTCGCCCGTTCCATTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCATCGAGAATGTAAGAAACAATATTTTCTGAAAATGGGCGGAGCTTGAAAAAAATTATAGTTAAGGTTCCCGAGGGTGTGTAGGTGTAGTGATGAGAAGACATAATAGTTTGTATGATCAAATGATATGATTAGATTTTTGAAATATTAACAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACSAGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTAAAAGAAGAGAGAAGTACAGTATATTCATCTTACCTTTATTACACAATCCCACCATTTTCATCTTTAAAATTAGAAGCTACGAGCAAACGTTTGGGTGCAAAATCTGAAACCAGAAACAAAGCGATGCGGCATCTCATTTCTAATTTCAGTGGGTTTCTTCTTCCGTGTATTCTCTTTTTCTTCTCATTCTCTATCTTGCACATTCCTCCTCAACGTTTTTTTTTGCTGGATGGAATAGAAGAGACACTGAATAAGCCGGATATCAACAAATTTGTGTCTCAAGACAGATATATCAAATTACGGGTCTTTAAATCCGCCACCACCGGATCAGCTGGTGGTGGTAGGAAAATGAGAGAAGTTGGGAGATGTAGAGAGAAAAAAGATGAAACAATTTTTCTAATTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAACATCAGTACAACACAATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGCTCGTAGCTTCTAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTAAAAGAAGAGAGAAGTACAGTATATTCATCTTACCTTTATTACACAATCCCACCATTTTCATCTTTAAAATTAGAAGCTACGAGCAAA</canonical_amplicon>
		<polymorphic_amplicon>CAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACSAGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTAAAAGAAGAGAGAAGTACAGTATATTCATCTTACCTTTATTACACAATCCCACCATTTTCATCTTTAAAATTAGAAGCTACGAGCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25693</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>281068</contig_pos>
        <strand>+</strand>
        <context>TGTTATAATC[A/T]AAGACTATCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATC</left_flank>
        <right_flank>AAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCATTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCATCGAGAATGTAAGAAACAATATTTTCTGAAAATGGGCGGAGCTTGAAAAAAATTATAGTTAAGGTTCCCGAGGGTGTGTAGGTGTAGTGATGAGAAGACATAATAGTTTGTATGATCAAATGATATGATTAGATTTTTGAAATATTAACAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTAAAAGAAGAGAGAAGTACAGTATATTCATCTTACCTTTATTACACAATCCCACCATTTTCATCTTTAAAATTAGAAGCTACGAGCAAACGTTTGGGTGCAAAATCTGAAACCAGAAACAAAGCGATGCGGCATCTCATTTCTAATTTCAGTGGGTTTCTTCTTCCGTGTATTCTCTTTTTCTTCTCATTCTCTATCTTGCACATTCCTCCTCAACGTTTTTTTTTGCTGGATGGAATAGAAGAGACACTGAATAAGCCGGATATCAACAAATTTGTGTCTCAAGACAGATATATCAAATTACGGGTCTTTAAATCCGCCACCACCGGATCAGCTGGTGGTGGTAGGAAAATGAGAGAAGTTGGGAGATGTAGAGAGAAAAAAGATGAAACAATTTTTCTAATTTCGTCAAAAAAAGAGCGTTCCGGTGTGTTGTTTT</canonical>
            <polymorphic>TCCATTGACCAAATTATGAATGAGTCTAATCTGTTTTGACATAGATTTCGAAGAAATTGAGTGTGAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCATCGAGAATGTAAGAAACAATATTTTCTGAAAATGGGCGGAGCTTGAAAAAAATTATAGTTAAGGTTCCCGAGGGTGTGTAGGTGTAGTGATGAGAAGACATAATAGTTTGTATGATCAAATGATATGATTAGATTTTTGAAATATTAACAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATCWAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTAAAAGAAGAGAGAAGTACAGTATATTCATCTTACCTTTATTACACAATCCCACCATTTTCATCTTTAAAATTAGAAGCTACGAGCAAACGTTTGGGTGCAAAATCTGAAACCAGAAACAAAGCGATGCGGCATCTCATTTCTAATTTCAGTGGGTTTCTTCTTCCGTGTATTCTCTTTTTCTTCTCATTCTCTATCTTGCACATTCCTCCTCAACGTTTTTTTTTGCTGGATGGAATAGAAGAGACACTGAATAAGCCGGATATCAACAAATTTGTGTCTCAAGACAGATATATCAAATTACGGGTCTTTAAATCCGCCACCACCGGATCAGCTGGTGGTGGTAGGAAAATGAGAGAAGTTGGGAGATGTAGAGAGAAAAAAGATGAAACAATTTTTCTAATTTCGTCAAAAAAAGAGCGTTCCGGTGTGTTGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAACATCAGTACAACACAATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGCTCGTAGCTTCTAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTAAAAGAAGAGAGAAGTACAGTATATTCATCTTACCTTTATTACACAATCCCACCATTTTCATCTTTAAAATTAGAAGCTACGAGCAAA</canonical_amplicon>
		<polymorphic_amplicon>CAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATCWAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTAAAAGAAGAGAGAAGTACAGTATATTCATCTTACCTTTATTACACAATCCCACCATTTTCATCTTTAAAATTAGAAGCTACGAGCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25694</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>281132</contig_pos>
        <strand>+</strand>
        <context>GTGCTCTACT[A/G]AAAGAAGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACT</left_flank>
        <right_flank>AAAGAAGAGAGAAGTACAGTATATTCATCTTACCTTTATTACACAATCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCATCGAGAATGTAAGAAACAATATTTTCTGAAAATGGGCGGAGCTTGAAAAAAATTATAGTTAAGGTTCCCGAGGGTGTGTAGGTGTAGTGATGAGAAGACATAATAGTTTGTATGATCAAATGATATGATTAGATTTTTGAAATATTAACAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTAAAAGAAGAGAGAAGTACAGTATATTCATCTTACCTTTATTACACAATCCCACCATTTTCATCTTTAAAATTAGAAGCTACGAGCAAACGTTTGGGTGCAAAATCTGAAACCAGAAACAAAGCGATGCGGCATCTCATTTCTAATTTCAGTGGGTTTCTTCTTCCGTGTATTCTCTTTTTCTTCTCATTCTCTATCTTGCACATTCCTCCTCAACGTTTTTTTTTGCTGGATGGAATAGAAGAGACACTGAATAAGCCGGATATCAACAAATTTGTGTCTCAAGACAGATATATCAAATTACGGGTCTTTAAATCCGCCACCACCGGATCAGCTGGTGGTGGTAGGAAAATGAGAGAAGTTGGGAGATGTAGAGAGAAAAAAGATGAAACAATTTTTCTAATTTCGTCAAAAAAAGAGCGTTCCGGTGTGTTGTTTTGAATGACGATAAACAGATTTGACAAGTTTCTTTCAAAAAGGAAAACAGGTCAAATGTTTCCGGG</canonical>
            <polymorphic>GAAATTTTTCAAAAAAAATTTTTTACCGTTCAGGTTGAGTGGTTCTCAAGTGTTCTCTGCCCCCAAAAAGAGAAAAGGGTAACGGAAAAATACAATCAATGTCACACGTCTAAAAAGCTAAACGTTGAGAGAAAAAAGTTCATGAAAATTCCATAGTACGAATGACTAACGAGCATAATACATAGGTCATCGAGAATGTAAGAAACAATATTTTCTGAAAATGGGCGGAGCTTGAAAAAAATTATAGTTAAGGTTCCCGAGGGTGTGTAGGTGTAGTGATGAGAAGACATAATAGTTTGTATGATCAAATGATATGATTAGATTTTTGAAATATTAACAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTRAAAGAAGAGAGAAGTACAGTATATTCATCTTACCTTTATTACACAATCCCACCATTTTCATCTTTAAAATTAGAAGCTACGAGCAAACGTTTGGGTGCAAAATCTGAAACCAGAAACAAAGCGATGCGGCATCTCATTTCTAATTTCAGTGGGTTTCTTCTTCCGTGTATTCTCTTTTTCTTCTCATTCTCTATCTTGCACATTCCTCCTCAACGTTTTTTTTTGCTGGATGGAATAGAAGAGACACTGAATAAGCCGGATATCAACAAATTTGTGTCTCAAGACAGATATATCAAATTACGGGTCTTTAAATCCGCCACCACCGGATCAGCTGGTGGTGGTAGGAAAATGAGAGAAGTTGGGAGATGTAGAGAGAAAAAAGATGAAACAATTTTTCTAATTTCGTCAAAAAAAGAGCGTTCCGGTGTGTTGTTTTGAATGACGATAAACAGATTTGACAAGTTTCTTTCAAAAAGGAAAACAGGTCAAATGTTTCCGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAACATCAGTACAACACAATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGCTCGTAGCTTCTAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTAAAAGAAGAGAGAAGTACAGTATATTCATCTTACCTTTATTACACAATCCCACCATTTTCATCTTTAAAATTAGAAGCTACGAGCAAA</canonical_amplicon>
		<polymorphic_amplicon>CAAACATCAGTACAACACAATTTTTTAAAATTTAAAAAGCATATCATCATAAACTGTGATTCATAACAAGTGTTTAGAATCTATCATTTGTTATAATCTAAGACTATCATTTTTCAGCCTCTATGCAATTTCTCTTCCAGTATAAAAGGCTGGTGCTCTACTRAAAGAAGAGAGAAGTACAGTATATTCATCTTACCTTTATTACACAATCCCACCATTTTCATCTTTAAAATTAGAAGCTACGAGCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25695</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>299563</contig_pos>
        <strand>+</strand>
        <context>GGAAAATAGT[A/C]AAAATTTACG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCGAGCCCGGCTAGGCCTTCAACGATTTTGGCAATTTTGCGGAAAATAGT</left_flank>
        <right_flank>AAAATTTACGGGAAAATATGTATTTTAAAGATGAGTGATTCAATTTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATAGTATTTTGTTATTAATCATCTGCAATTTTACGTTTTCATTTCTATTTCCCACGTTCTCAATTTTAACCTAGTTCACCTCGGTTTTTGAGAAAGGCGTCATACAGCGGTCCATGGAAAGAATTTTGTTCATTCAATTAACCATAATCTGTGAGTGTATTGATTTTTATTAGCTTTTCAATGAGCTAAAATAAAATGGATCAGAACTAACAATTTGATAGATTAATGCAGATTCTATGGTTTTCACAATAAGATATACAAAAACTTATTTTCCGTTTTCAGAAGTCCCGTTGTGCTGAAAATGTTTAAAAAAACGTGTTTCAGAAATCGGTAAATATCTGAAAAACTAGGAATTTTCTAATTCTGTCAATGCAAAGATGTCAATCTAAGTCTGATTCACACACTCCCAAAGTTTCAAAAAATTCCTATTAGTTCCTTGCGGGCCTTCCGAGCCCGGCTAGGCCTTCAACGATTTTGGCAATTTTGCGGAAAATAGTCAAAATTTACGGGAAAATATGTATTTTAAAGATGAGTGATTCAATTTTTTTTAAAATCTAGATTCTCTAAAAATTCATGACACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTTGCGATGACGACCTCTTTCTTTGTCCTTTTCTTTTCCCACAAAAAAGGACCCACCTTTCTTTTTCTTTTTATGCTTTACTCTTCTTTTTTTACACACAGCACGCATACACTAAAATTCAAAAAGGAGGGGATAGAGAAGAGAAAGAAAAAGCAGAAGCAAGGGATAAAAGAA</canonical>
            <polymorphic>AAATAGTATTTTGTTATTAATCATCTGCAATTTTACGTTTTCATTTCTATTTCCCACGTTCTCAATTTTAACCTAGTTCACCTCGGTTTTTGAGAAAGGCGTCATACAGCGGTCCATGGAAAGAATTTTGTTCATTCAATTAACCATAATCTGTGAGTGTATTGATTTTTATTAGCTTTTCAATGAGCTAAAATAAAATGGATCAGAACTAACAATTTGATAGATTAATGCAGATTCTATGGTTTTCACAATAAGATATACAAAAACTTATTTTCCGTTTTCAGAAGTCCCGTTGTGCTGAAAATGTTTAAAAAAACGTGTTTCAGAAATCGGTAAATATCTGAAAAACTAGGAATTTTCTAATTCTGTCAATGCAAAGATGTCAATCTAAGTCTGATTCACACACTCCCAAAGTTTCAAAAAATTCCTATTAGTTCCTTGCGGGCCTTCCGAGCCCGGCTAGGCCTTCAACGATTTTGGCAATTTTGCGGAAAATAGTMAAAATTTACGGGAAAATATGTATTTTAAAGATGAGTGATTCAATTTTTTTTAAAATCTAGATTCTCTAAAAATTCATGACACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTTGCGATGACGACCTCTTTCTTTGTCCTTTTCTTTTCCCACAAAAAAGGACCCACCTTTCTTTTTCTTTTTATGCTTTACTCTTCTTTTTTTACACACAGCACGCATACACTAAAATTCAAAAAGGAGGGGATAGAGAAGAGAAAGAAAAAGCAGAAGCAAGGGATAAAAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTTTCCGTTTTCAGAAGTC</pcr_primer_p1>
		<pcr_primer_p2>TGAGTGTGTCATGAATTTTTAGA</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>TTATTTTCCGTTTTCAGAAGTCCCGTTGTGCTGAAAATGTTTAAAAAAACGTGTTTCAGAAATCGGTAAATATCTGAAAAACTAGGAATTTTCTAATTCTGTCAATGCAAAGATGTCAATCTAAGTCTGATTCACACACTCCCAAAGTTTCAAAAAATTCCTATTAGTTCCTTGCGGGCCTTCCGAGCCCGGCTAGGCCTTCAACGATTTTGGCAATTTTGCGGAAAATAGTCAAAATTTACGGGAAAATATGTATTTTAAAGATGAGTGATTCAATTTTTTTTAAAATCTAGATTCTCTAAAAATTCATGACACACTCA</canonical_amplicon>
		<polymorphic_amplicon>TTATTTTCCGTTTTCAGAAGTCCCGTTGTGCTGAAAATGTTTAAAAAAACGTGTTTCAGAAATCGGTAAATATCTGAAAAACTAGGAATTTTCTAATTCTGTCAATGCAAAGATGTCAATCTAAGTCTGATTCACACACTCCCAAAGTTTCAAAAAATTCCTATTAGTTCCTTGCGGGCCTTCCGAGCCCGGCTAGGCCTTCAACGATTTTGGCAATTTTGCGGAAAATAGTMAAAATTTACGGGAAAATATGTATTTTAAAGATGAGTGATTCAATTTTTTTTAAAATCTAGATTCTCTAAAAATTCATGACACACTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25696</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>299586</contig_pos>
        <strand>+</strand>
        <context>AAAATATGTA[C/T]TTTAAAGATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTTTGGCAATTTTGCGGAAAATAGTCAAAATTTACGGGAAAATATGTA</left_flank>
        <right_flank>TTTAAAGATGAGTGATTCAATTTTTTTTAAAATCTAGATTCTCTAAAAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGCAATTTTACGTTTTCATTTCTATTTCCCACGTTCTCAATTTTAACCTAGTTCACCTCGGTTTTTGAGAAAGGCGTCATACAGCGGTCCATGGAAAGAATTTTGTTCATTCAATTAACCATAATCTGTGAGTGTATTGATTTTTATTAGCTTTTCAATGAGCTAAAATAAAATGGATCAGAACTAACAATTTGATAGATTAATGCAGATTCTATGGTTTTCACAATAAGATATACAAAAACTTATTTTCCGTTTTCAGAAGTCCCGTTGTGCTGAAAATGTTTAAAAAAACGTGTTTCAGAAATCGGTAAATATCTGAAAAACTAGGAATTTTCTAATTCTGTCAATGCAAAGATGTCAATCTAAGTCTGATTCACACACTCCCAAAGTTTCAAAAAATTCCTATTAGTTCCTTGCGGGCCTTCCGAGCCCGGCTAGGCCTTCAACGATTTTGGCAATTTTGCGGAAAATAGTCAAAATTTACGGGAAAATATGTATTTTAAAGATGAGTGATTCAATTTTTTTTAAAATCTAGATTCTCTAAAAATTCATGACACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTTGCGATGACGACCTCTTTCTTTGTCCTTTTCTTTTCCCACAAAAAAGGACCCACCTTTCTTTTTCTTTTTATGCTTTACTCTTCTTTTTTTACACACAGCACGCATACACTAAAATTCAAAAAGGAGGGGATAGAGAAGAGAAAGAAAAAGCAGAAGCAAGGGATAAAAGAAGAAGAAAGTCTCAAAAAGAGAAG</canonical>
            <polymorphic>TCTGCAATTTTACGTTTTCATTTCTATTTCCCACGTTCTCAATTTTAACCTAGTTCACCTCGGTTTTTGAGAAAGGCGTCATACAGCGGTCCATGGAAAGAATTTTGTTCATTCAATTAACCATAATCTGTGAGTGTATTGATTTTTATTAGCTTTTCAATGAGCTAAAATAAAATGGATCAGAACTAACAATTTGATAGATTAATGCAGATTCTATGGTTTTCACAATAAGATATACAAAAACTTATTTTCCGTTTTCAGAAGTCCCGTTGTGCTGAAAATGTTTAAAAAAACGTGTTTCAGAAATCGGTAAATATCTGAAAAACTAGGAATTTTCTAATTCTGTCAATGCAAAGATGTCAATCTAAGTCTGATTCACACACTCCCAAAGTTTCAAAAAATTCCTATTAGTTCCTTGCGGGCCTTCCGAGCCCGGCTAGGCCTTCAACGATTTTGGCAATTTTGCGGAAAATAGTCAAAATTTACGGGAAAATATGTAYTTTAAAGATGAGTGATTCAATTTTTTTTAAAATCTAGATTCTCTAAAAATTCATGACACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTTGCGATGACGACCTCTTTCTTTGTCCTTTTCTTTTCCCACAAAAAAGGACCCACCTTTCTTTTTCTTTTTATGCTTTACTCTTCTTTTTTTACACACAGCACGCATACACTAAAATTCAAAAAGGAGGGGATAGAGAAGAGAAAGAAAAAGCAGAAGCAAGGGATAAAAGAAGAAGAAAGTCTCAAAAAGAGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTTTCCGTTTTCAGAAGTC</pcr_primer_p1>
		<pcr_primer_p2>TGAGTGTGTCATGAATTTTTAGA</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>TTATTTTCCGTTTTCAGAAGTCCCGTTGTGCTGAAAATGTTTAAAAAAACGTGTTTCAGAAATCGGTAAATATCTGAAAAACTAGGAATTTTCTAATTCTGTCAATGCAAAGATGTCAATCTAAGTCTGATTCACACACTCCCAAAGTTTCAAAAAATTCCTATTAGTTCCTTGCGGGCCTTCCGAGCCCGGCTAGGCCTTCAACGATTTTGGCAATTTTGCGGAAAATAGTCAAAATTTACGGGAAAATATGTATTTTAAAGATGAGTGATTCAATTTTTTTTAAAATCTAGATTCTCTAAAAATTCATGACACACTCA</canonical_amplicon>
		<polymorphic_amplicon>TTATTTTCCGTTTTCAGAAGTCCCGTTGTGCTGAAAATGTTTAAAAAAACGTGTTTCAGAAATCGGTAAATATCTGAAAAACTAGGAATTTTCTAATTCTGTCAATGCAAAGATGTCAATCTAAGTCTGATTCACACACTCCCAAAGTTTCAAAAAATTCCTATTAGTTCCTTGCGGGCCTTCCGAGCCCGGCTAGGCCTTCAACGATTTTGGCAATTTTGCGGAAAATAGTCAAAATTTACGGGAAAATATGTAYTTTAAAGATGAGTGATTCAATTTTTTTTAAAATCTAGATTCTCTAAAAATTCATGACACACTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25697</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>299606</contig_pos>
        <strand>+</strand>
        <context>GAGTGATTCA[A/T]TTTTTTTTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATAGTCAAAATTTACGGGAAAATATGTATTTTAAAGATGAGTGATTCA</left_flank>
        <right_flank>TTTTTTTTAAAATCTAGATTCTCTAAAAATTCATGACACACTCAAGTGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTATTTCCCACGTTCTCAATTTTAACCTAGTTCACCTCGGTTTTTGAGAAAGGCGTCATACAGCGGTCCATGGAAAGAATTTTGTTCATTCAATTAACCATAATCTGTGAGTGTATTGATTTTTATTAGCTTTTCAATGAGCTAAAATAAAATGGATCAGAACTAACAATTTGATAGATTAATGCAGATTCTATGGTTTTCACAATAAGATATACAAAAACTTATTTTCCGTTTTCAGAAGTCCCGTTGTGCTGAAAATGTTTAAAAAAACGTGTTTCAGAAATCGGTAAATATCTGAAAAACTAGGAATTTTCTAATTCTGTCAATGCAAAGATGTCAATCTAAGTCTGATTCACACACTCCCAAAGTTTCAAAAAATTCCTATTAGTTCCTTGCGGGCCTTCCGAGCCCGGCTAGGCCTTCAACGATTTTGGCAATTTTGCGGAAAATAGTCAAAATTTACGGGAAAATATGTATTTTAAAGATGAGTGATTCAATTTTTTTTAAAATCTAGATTCTCTAAAAATTCATGACACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTTGCGATGACGACCTCTTTCTTTGTCCTTTTCTTTTCCCACAAAAAAGGACCCACCTTTCTTTTTCTTTTTATGCTTTACTCTTCTTTTTTTACACACAGCACGCATACACTAAAATTCAAAAAGGAGGGGATAGAGAAGAGAAAGAAAAAGCAGAAGCAAGGGATAAAAGAAGAAGAAAGTCTCAAAAAGAGAAGATATACACAAAATGAACGTT</canonical>
            <polymorphic>TTTCTATTTCCCACGTTCTCAATTTTAACCTAGTTCACCTCGGTTTTTGAGAAAGGCGTCATACAGCGGTCCATGGAAAGAATTTTGTTCATTCAATTAACCATAATCTGTGAGTGTATTGATTTTTATTAGCTTTTCAATGAGCTAAAATAAAATGGATCAGAACTAACAATTTGATAGATTAATGCAGATTCTATGGTTTTCACAATAAGATATACAAAAACTTATTTTCCGTTTTCAGAAGTCCCGTTGTGCTGAAAATGTTTAAAAAAACGTGTTTCAGAAATCGGTAAATATCTGAAAAACTAGGAATTTTCTAATTCTGTCAATGCAAAGATGTCAATCTAAGTCTGATTCACACACTCCCAAAGTTTCAAAAAATTCCTATTAGTTCCTTGCGGGCCTTCCGAGCCCGGCTAGGCCTTCAACGATTTTGGCAATTTTGCGGAAAATAGTCAAAATTTACGGGAAAATATGTATTTTAAAGATGAGTGATTCAWTTTTTTTTAAAATCTAGATTCTCTAAAAATTCATGACACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTTGCGATGACGACCTCTTTCTTTGTCCTTTTCTTTTCCCACAAAAAAGGACCCACCTTTCTTTTTCTTTTTATGCTTTACTCTTCTTTTTTTACACACAGCACGCATACACTAAAATTCAAAAAGGAGGGGATAGAGAAGAGAAAGAAAAAGCAGAAGCAAGGGATAAAAGAAGAAGAAAGTCTCAAAAAGAGAAGATATACACAAAATGAACGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>160 140 102 94 76 72 61 60 59 39 34 29 21 20 14 11 8</canonical_bands>
                <polymorphic_bands>160 140 102 94 76 72 68 61 60 59 34 21 20 14 11 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATTTTCCGTTTTCAGAAGTC</pcr_primer_p1>
		<pcr_primer_p2>GAATTAGGAGAGAAGTAACACTTGA</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>TTATTTTCCGTTTTCAGAAGTCCCGTTGTGCTGAAAATGTTTAAAAAAACGTGTTTCAGAAATCGGTAAATATCTGAAAAACTAGGAATTTTCTAATTCTGTCAATGCAAAGATGTCAATCTAAGTCTGATTCACACACTCCCAAAGTTTCAAAAAATTCCTATTAGTTCCTTGCGGGCCTTCCGAGCCCGGCTAGGCCTTCAACGATTTTGGCAATTTTGCGGAAAATAGTCAAAATTTACGGGAAAATATGTATTTTAAAGATGAGTGATTCAATTTTTTTTAAAATCTAGATTCTCTAAAAATTCATGACACACTCAAGTGTTACTTCTCTCCTAATTC</canonical_amplicon>
		<polymorphic_amplicon>TTATTTTCCGTTTTCAGAAGTCCCGTTGTGCTGAAAATGTTTAAAAAAACGTGTTTCAGAAATCGGTAAATATCTGAAAAACTAGGAATTTTCTAATTCTGTCAATGCAAAGATGTCAATCTAAGTCTGATTCACACACTCCCAAAGTTTCAAAAAATTCCTATTAGTTCCTTGCGGGCCTTCCGAGCCCGGCTAGGCCTTCAACGATTTTGGCAATTTTGCGGAAAATAGTCAAAATTTACGGGAAAATATGTATTTTAAAGATGAGTGATTCAWTTTTTTTTAAAATCTAGATTCTCTAAAAATTCATGACACACTCAAGTGTTACTTCTCTCCTAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25698</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>299720</contig_pos>
        <strand>+</strand>
        <context>GTCAGACTTT[G/T]TTCTCGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTT</left_flank>
        <right_flank>TTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTATTGATTTTTATTAGCTTTTCAATGAGCTAAAATAAAATGGATCAGAACTAACAATTTGATAGATTAATGCAGATTCTATGGTTTTCACAATAAGATATACAAAAACTTATTTTCCGTTTTCAGAAGTCCCGTTGTGCTGAAAATGTTTAAAAAAACGTGTTTCAGAAATCGGTAAATATCTGAAAAACTAGGAATTTTCTAATTCTGTCAATGCAAAGATGTCAATCTAAGTCTGATTCACACACTCCCAAAGTTTCAAAAAATTCCTATTAGTTCCTTGCGGGCCTTCCGAGCCCGGCTAGGCCTTCAACGATTTTGGCAATTTTGCGGAAAATAGTCAAAATTTACGGGAAAATATGTATTTTAAAGATGAGTGATTCAATTTTTTTTAAAATCTAGATTCTCTAAAAATTCATGACACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTTGCGATGACGACCTCTTTCTTTGTCCTTTTCTTTTCCCACAAAAAAGGACCCACCTTTCTTTTTCTTTTTATGCTTTACTCTTCTTTTTTTACACACAGCACGCATACACTAAAATTCAAAAAGGAGGGGATAGAGAAGAGAAAGAAAAAGCAGAAGCAAGGGATAAAAGAAGAAGAAAGTCTCAAAAAGAGAAGATATACACAAAATGAACGTTCAAAAAGAGTAATATTGTTTTTGGGGTCTGACAAGATAAAGTGAAAACAGGAAACATTTTAAAAAATTAATATGAGTGAAACCTTCAAATGAGTTCTATGTCCAGTCTTTCTTA</canonical>
            <polymorphic>TGTATTGATTTTTATTAGCTTTTCAATGAGCTAAAATAAAATGGATCAGAACTAACAATTTGATAGATTAATGCAGATTCTATGGTTTTCACAATAAGATATACAAAAACTTATTTTCCGTTTTCAGAAGTCCCGTTGTGCTGAAAATGTTTAAAAAAACGTGTTTCAGAAATCGGTAAATATCTGAAAAACTAGGAATTTTCTAATTCTGTCAATGCAAAGATGTCAATCTAAGTCTGATTCACACACTCCCAAAGTTTCAAAAAATTCCTATTAGTTCCTTGCGGGCCTTCCGAGCCCGGCTAGGCCTTCAACGATTTTGGCAATTTTGCGGAAAATAGTCAAAATTTACGGGAAAATATGTATTTTAAAGATGAGTGATTCAATTTTTTTTAAAATCTAGATTCTCTAAAAATTCATGACACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTKTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTTGCGATGACGACCTCTTTCTTTGTCCTTTTCTTTTCCCACAAAAAAGGACCCACCTTTCTTTTTCTTTTTATGCTTTACTCTTCTTTTTTTACACACAGCACGCATACACTAAAATTCAAAAAGGAGGGGATAGAGAAGAGAAAGAAAAAGCAGAAGCAAGGGATAAAAGAAGAAGAAAGTCTCAAAAAGAGAAGATATACACAAAATGAACGTTCAAAAAGAGTAATATTGTTTTTGGGGTCTGACAAGATAAAGTGAAAACAGGAAACATTTTAAAAAATTAATATGAGTGAAACCTTCAAATGAGTTCTATGTCCAGTCTTTCTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACTCAAGTGTTACTTCTCTCC</pcr_primer_p1>
		<pcr_primer_p2>AACATGGAAACATACGAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTT</canonical_amplicon>
		<polymorphic_amplicon>ACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTKTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25699</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>299785</contig_pos>
        <strand>+</strand>
        <context>CTCACCTAGA[C/T]AAAAAACTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGA</left_flank>
        <right_flank>AAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTAATGCAGATTCTATGGTTTTCACAATAAGATATACAAAAACTTATTTTCCGTTTTCAGAAGTCCCGTTGTGCTGAAAATGTTTAAAAAAACGTGTTTCAGAAATCGGTAAATATCTGAAAAACTAGGAATTTTCTAATTCTGTCAATGCAAAGATGTCAATCTAAGTCTGATTCACACACTCCCAAAGTTTCAAAAAATTCCTATTAGTTCCTTGCGGGCCTTCCGAGCCCGGCTAGGCCTTCAACGATTTTGGCAATTTTGCGGAAAATAGTCAAAATTTACGGGAAAATATGTATTTTAAAGATGAGTGATTCAATTTTTTTTAAAATCTAGATTCTCTAAAAATTCATGACACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTTGCGATGACGACCTCTTTCTTTGTCCTTTTCTTTTCCCACAAAAAAGGACCCACCTTTCTTTTTCTTTTTATGCTTTACTCTTCTTTTTTTACACACAGCACGCATACACTAAAATTCAAAAAGGAGGGGATAGAGAAGAGAAAGAAAAAGCAGAAGCAAGGGATAAAAGAAGAAGAAAGTCTCAAAAAGAGAAGATATACACAAAATGAACGTTCAAAAAGAGTAATATTGTTTTTGGGGTCTGACAAGATAAAGTGAAAACAGGAAACATTTTAAAAAATTAATATGAGTGAAACCTTCAAATGAGTTCTATGTCCAGTCTTTCTTATTGAATAGCAAATATCATTTAACAATGAAAAGGTGTGTATAGACTTGTTCAAACAAAACAAACAT</canonical>
            <polymorphic>GATTAATGCAGATTCTATGGTTTTCACAATAAGATATACAAAAACTTATTTTCCGTTTTCAGAAGTCCCGTTGTGCTGAAAATGTTTAAAAAAACGTGTTTCAGAAATCGGTAAATATCTGAAAAACTAGGAATTTTCTAATTCTGTCAATGCAAAGATGTCAATCTAAGTCTGATTCACACACTCCCAAAGTTTCAAAAAATTCCTATTAGTTCCTTGCGGGCCTTCCGAGCCCGGCTAGGCCTTCAACGATTTTGGCAATTTTGCGGAAAATAGTCAAAATTTACGGGAAAATATGTATTTTAAAGATGAGTGATTCAATTTTTTTTAAAATCTAGATTCTCTAAAAATTCATGACACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAYAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTTGCGATGACGACCTCTTTCTTTGTCCTTTTCTTTTCCCACAAAAAAGGACCCACCTTTCTTTTTCTTTTTATGCTTTACTCTTCTTTTTTTACACACAGCACGCATACACTAAAATTCAAAAAGGAGGGGATAGAGAAGAGAAAGAAAAAGCAGAAGCAAGGGATAAAAGAAGAAGAAAGTCTCAAAAAGAGAAGATATACACAAAATGAACGTTCAAAAAGAGTAATATTGTTTTTGGGGTCTGACAAGATAAAGTGAAAACAGGAAACATTTTAAAAAATTAATATGAGTGAAACCTTCAAATGAGTTCTATGTCCAGTCTTTCTTATTGAATAGCAAATATCATTTAACAATGAAAAGGTGTGTATAGACTTGTTCAAACAAAACAAACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACTCAAGTGTTACTTCTCTCC</pcr_primer_p1>
		<pcr_primer_p2>AACATGGAAACATACGAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTT</canonical_amplicon>
		<polymorphic_amplicon>ACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAYAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25700</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>299801</contig_pos>
        <strand></strand>
        <context>ACTGAACTCT[T/C]CATTTCCYTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCT</left_flank>
        <right_flank>CATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGTTTTCACAATAAGATATACAAAAACTTATTTTCCGTTTTCAGAAGTCCCGTTGTGCTGAAAATGTTTAAAAAAACGTGTTTCAGAAATCGGTAAATATCTGAAAAACTAGGAATTTTCTAATTCTGTCAATGCAAAGATGTCAATCTAAGTCTGATTCACACACTCCCAAAGTTTCAAAAAATTCCTATTAGTTCCTTGCGGGCCTTCCGAGCCCGGCTAGGCCTTCAACGATTTTGGCAATTTTGCGGAAAATAGTCAAAATTTACGGGAAAATATGTATTTTAAAGATGAGTGATTCAATTTTTTTTAAAATCTAGATTCTCTAAAAATTCATGACACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTTGCGATGACGACCTCTTTCTTTGTCCTTTTCTTTTCCCACAAAAAAGGACCCACCTTTCTTTTTCTTTTTATGCTTTACTCTTCTTTTTTTACACACAGCACGCATACACTAAAATTCAAAAAGGAGGGGATAGAGAAGAGAAAGAAAAAGCAGAAGCAAGGGATAAAAGAAGAAGAAAGTCTCAAAAAGAGAAGATATACACAAAATGAACGTTCAAAAAGAGTAATATTGTTTTTGGGGTCTGACAAGATAAAGTGAAAACAGGAAACATTTTAAAAAATTAATATGAGTGAAACCTTCAAATGAGTTCTATGTCCAGTCTTTCTTATTGAATAGCAAATATCATTTAACAATGAAAAGGTGTGTATAGACTTGTTCAAACAAAACAAACATTTATCAGACTTGTTTT</canonical>
            <polymorphic>ATGGTTTTCACAATAAGATATACAAAAACTTATTTTCCGTTTTCAGAAGTCCCGTTGTGCTGAAAATGTTTAAAAAAACGTGTTTCAGAAATCGGTAAATATCTGAAAAACTAGGAATTTTCTAATTCTGTCAATGCAAAGATGTCAATCTAAGTCTGATTCACACACTCCCAAAGTTTCAAAAAATTCCTATTAGTTCCTTGCGGGCCTTCCGAGCCCGGCTAGGCCTTCAACGATTTTGGCAATTTTGCGGAAAATAGTCAAAATTTACGGGAAAATATGTATTTTAAAGATGAGTGATTCAATTTTTTTTAAAATCTAGATTCTCTAAAAATTCATGACACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTYCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTTGCGATGACGACCTCTTTCTTTGTCCTTTTCTTTTCCCACAAAAAAGGACCCACCTTTCTTTTTCTTTTTATGCTTTACTCTTCTTTTTTTACACACAGCACGCATACACTAAAATTCAAAAAGGAGGGGATAGAGAAGAGAAAGAAAAAGCAGAAGCAAGGGATAAAAGAAGAAGAAAGTCTCAAAAAGAGAAGATATACACAAAATGAACGTTCAAAAAGAGTAATATTGTTTTTGGGGTCTGACAAGATAAAGTGAAAACAGGAAACATTTTAAAAAATTAATATGAGTGAAACCTTCAAATGAGTTCTATGTCCAGTCTTTCTTATTGAATAGCAAATATCATTTAACAATGAAAAGGTGTGTATAGACTTGTTCAAACAAAACAAACATTTATCAGACTTGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACTCAAGTGTTACTTCTCTCC</pcr_primer_p1>
		<pcr_primer_p2>AACATGGAAACATACGAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTT</canonical_amplicon>
		<polymorphic_amplicon>ACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTYCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25701</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>299809</contig_pos>
        <strand>+</strand>
        <context>CTYCATTTCC[C/T]TTTTTTTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCC</left_flank>
        <right_flank>TTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACAATAAGATATACAAAAACTTATTTTCCGTTTTCAGAAGTCCCGTTGTGCTGAAAATGTTTAAAAAAACGTGTTTCAGAAATCGGTAAATATCTGAAAAACTAGGAATTTTCTAATTCTGTCAATGCAAAGATGTCAATCTAAGTCTGATTCACACACTCCCAAAGTTTCAAAAAATTCCTATTAGTTCCTTGCGGGCCTTCCGAGCCCGGCTAGGCCTTCAACGATTTTGGCAATTTTGCGGAAAATAGTCAAAATTTACGGGAAAATATGTATTTTAAAGATGAGTGATTCAATTTTTTTTAAAATCTAGATTCTCTAAAAATTCATGACACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTTGCGATGACGACCTCTTTCTTTGTCCTTTTCTTTTCCCACAAAAAAGGACCCACCTTTCTTTTTCTTTTTATGCTTTACTCTTCTTTTTTTACACACAGCACGCATACACTAAAATTCAAAAAGGAGGGGATAGAGAAGAGAAAGAAAAAGCAGAAGCAAGGGATAAAAGAAGAAGAAAGTCTCAAAAAGAGAAGATATACACAAAATGAACGTTCAAAAAGAGTAATATTGTTTTTGGGGTCTGACAAGATAAAGTGAAAACAGGAAACATTTTAAAAAATTAATATGAGTGAAACCTTCAAATGAGTTCTATGTCCAGTCTTTCTTATTGAATAGCAAATATCATTTAACAATGAAAAGGTGTGTATAGACTTGTTCAAACAAAACAAACATTTATCAGACTTGTTTTTCCTCAGA</canonical>
            <polymorphic>CACAATAAGATATACAAAAACTTATTTTCCGTTTTCAGAAGTCCCGTTGTGCTGAAAATGTTTAAAAAAACGTGTTTCAGAAATCGGTAAATATCTGAAAAACTAGGAATTTTCTAATTCTGTCAATGCAAAGATGTCAATCTAAGTCTGATTCACACACTCCCAAAGTTTCAAAAAATTCCTATTAGTTCCTTGCGGGCCTTCCGAGCCCGGCTAGGCCTTCAACGATTTTGGCAATTTTGCGGAAAATAGTCAAAATTTACGGGAAAATATGTATTTTAAAGATGAGTGATTCAATTTTTTTTAAAATCTAGATTCTCTAAAAATTCATGACACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCYTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTTGCGATGACGACCTCTTTCTTTGTCCTTTTCTTTTCCCACAAAAAAGGACCCACCTTTCTTTTTCTTTTTATGCTTTACTCTTCTTTTTTTACACACAGCACGCATACACTAAAATTCAAAAAGGAGGGGATAGAGAAGAGAAAGAAAAAGCAGAAGCAAGGGATAAAAGAAGAAGAAAGTCTCAAAAAGAGAAGATATACACAAAATGAACGTTCAAAAAGAGTAATATTGTTTTTGGGGTCTGACAAGATAAAGTGAAAACAGGAAACATTTTAAAAAATTAATATGAGTGAAACCTTCAAATGAGTTCTATGTCCAGTCTTTCTTATTGAATAGCAAATATCATTTAACAATGAAAAGGTGTGTATAGACTTGTTCAAACAAAACAAACATTTATCAGACTTGTTTTTCCTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACTCAAGTGTTACTTCTCTCC</pcr_primer_p1>
		<pcr_primer_p2>AACATGGAAACATACGAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTT</canonical_amplicon>
		<polymorphic_amplicon>ACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCYTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25702</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>299833</contig_pos>
        <strand></strand>
        <context>CTTGCAAAAA[A/C]RATTTYGGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAA</left_flank>
        <right_flank>AATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCCGTTTTCAGAAGTCCCGTTGTGCTGAAAATGTTTAAAAAAACGTGTTTCAGAAATCGGTAAATATCTGAAAAACTAGGAATTTTCTAATTCTGTCAATGCAAAGATGTCAATCTAAGTCTGATTCACACACTCCCAAAGTTTCAAAAAATTCCTATTAGTTCCTTGCGGGCCTTCCGAGCCCGGCTAGGCCTTCAACGATTTTGGCAATTTTGCGGAAAATAGTCAAAATTTACGGGAAAATATGTATTTTAAAGATGAGTGATTCAATTTTTTTTAAAATCTAGATTCTCTAAAAATTCATGACACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTTGCGATGACGACCTCTTTCTTTGTCCTTTTCTTTTCCCACAAAAAAGGACCCACCTTTCTTTTTCTTTTTATGCTTTACTCTTCTTTTTTTACACACAGCACGCATACACTAAAATTCAAAAAGGAGGGGATAGAGAAGAGAAAGAAAAAGCAGAAGCAAGGGATAAAAGAAGAAGAAAGTCTCAAAAAGAGAAGATATACACAAAATGAACGTTCAAAAAGAGTAATATTGTTTTTGGGGTCTGACAAGATAAAGTGAAAACAGGAAACATTTTAAAAAATTAATATGAGTGAAACCTTCAAATGAGTTCTATGTCCAGTCTTTCTTATTGAATAGCAAATATCATTTAACAATGAAAAGGTGTGTATAGACTTGTTCAAACAAAACAAACATTTATCAGACTTGTTTTTCCTCAGAAATAATAGTCAGAAGCAAATGAAC</canonical>
            <polymorphic>TTTTCCGTTTTCAGAAGTCCCGTTGTGCTGAAAATGTTTAAAAAAACGTGTTTCAGAAATCGGTAAATATCTGAAAAACTAGGAATTTTCTAATTCTGTCAATGCAAAGATGTCAATCTAAGTCTGATTCACACACTCCCAAAGTTTCAAAAAATTCCTATTAGTTCCTTGCGGGCCTTCCGAGCCCGGCTAGGCCTTCAACGATTTTGGCAATTTTGCGGAAAATAGTCAAAATTTACGGGAAAATATGTATTTTAAAGATGAGTGATTCAATTTTTTTTAAAATCTAGATTCTCTAAAAATTCATGACACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAMAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTTGCGATGACGACCTCTTTCTTTGTCCTTTTCTTTTCCCACAAAAAAGGACCCACCTTTCTTTTTCTTTTTATGCTTTACTCTTCTTTTTTTACACACAGCACGCATACACTAAAATTCAAAAAGGAGGGGATAGAGAAGAGAAAGAAAAAGCAGAAGCAAGGGATAAAAGAAGAAGAAAGTCTCAAAAAGAGAAGATATACACAAAATGAACGTTCAAAAAGAGTAATATTGTTTTTGGGGTCTGACAAGATAAAGTGAAAACAGGAAACATTTTAAAAAATTAATATGAGTGAAACCTTCAAATGAGTTCTATGTCCAGTCTTTCTTATTGAATAGCAAATATCATTTAACAATGAAAAGGTGTGTATAGACTTGTTCAAACAAAACAAACATTTATCAGACTTGTTTTTCCTCAGAAATAATAGTCAGAAGCAAATGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>329 200 171 83 80 69 68</canonical_bands>
                <polymorphic_bands>371 329 83 80 69 68</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACACTCAAGTGTTACTTCTCTCC</pcr_primer_p1>
		<pcr_primer_p2>AACATGGAAACATACGAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTT</canonical_amplicon>
		<polymorphic_amplicon>ACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAMAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25703</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>299834</contig_pos>
        <strand></strand>
        <context>TTGCAAAAAM[A/G]ATTTYGGACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAA</left_flank>
        <right_flank>ATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCCGTTTTCAGAAGTCCCGTTGTGCTGAAAATGTTTAAAAAAACGTGTTTCAGAAATCGGTAAATATCTGAAAAACTAGGAATTTTCTAATTCTGTCAATGCAAAGATGTCAATCTAAGTCTGATTCACACACTCCCAAAGTTTCAAAAAATTCCTATTAGTTCCTTGCGGGCCTTCCGAGCCCGGCTAGGCCTTCAACGATTTTGGCAATTTTGCGGAAAATAGTCAAAATTTACGGGAAAATATGTATTTTAAAGATGAGTGATTCAATTTTTTTTAAAATCTAGATTCTCTAAAAATTCATGACACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTTGCGATGACGACCTCTTTCTTTGTCCTTTTCTTTTCCCACAAAAAAGGACCCACCTTTCTTTTTCTTTTTATGCTTTACTCTTCTTTTTTTACACACAGCACGCATACACTAAAATTCAAAAAGGAGGGGATAGAGAAGAGAAAGAAAAAGCAGAAGCAAGGGATAAAAGAAGAAGAAAGTCTCAAAAAGAGAAGATATACACAAAATGAACGTTCAAAAAGAGTAATATTGTTTTTGGGGTCTGACAAGATAAAGTGAAAACAGGAAACATTTTAAAAAATTAATATGAGTGAAACCTTCAAATGAGTTCTATGTCCAGTCTTTCTTATTGAATAGCAAATATCATTTAACAATGAAAAGGTGTGTATAGACTTGTTCAAACAAAACAAACATTTATCAGACTTGTTTTTCCTCAGAAATAATAGTCAGAAGCAAATGAACG</canonical>
            <polymorphic>TTTCCGTTTTCAGAAGTCCCGTTGTGCTGAAAATGTTTAAAAAAACGTGTTTCAGAAATCGGTAAATATCTGAAAAACTAGGAATTTTCTAATTCTGTCAATGCAAAGATGTCAATCTAAGTCTGATTCACACACTCCCAAAGTTTCAAAAAATTCCTATTAGTTCCTTGCGGGCCTTCCGAGCCCGGCTAGGCCTTCAACGATTTTGGCAATTTTGCGGAAAATAGTCAAAATTTACGGGAAAATATGTATTTTAAAGATGAGTGATTCAATTTTTTTTAAAATCTAGATTCTCTAAAAATTCATGACACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAARATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTTGCGATGACGACCTCTTTCTTTGTCCTTTTCTTTTCCCACAAAAAAGGACCCACCTTTCTTTTTCTTTTTATGCTTTACTCTTCTTTTTTTACACACAGCACGCATACACTAAAATTCAAAAAGGAGGGGATAGAGAAGAGAAAGAAAAAGCAGAAGCAAGGGATAAAAGAAGAAGAAAGTCTCAAAAAGAGAAGATATACACAAAATGAACGTTCAAAAAGAGTAATATTGTTTTTGGGGTCTGACAAGATAAAGTGAAAACAGGAAACATTTTAAAAAATTAATATGAGTGAAACCTTCAAATGAGTTCTATGTCCAGTCTTTCTTATTGAATAGCAAATATCATTTAACAATGAAAAGGTGTGTATAGACTTGTTCAAACAAAACAAACATTTATCAGACTTGTTTTTCCTCAGAAATAATAGTCAGAAGCAAATGAACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>330 200 171 82 80 69 68</canonical_bands>
                <polymorphic_bands>371 330 82 80 69 68</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>166 164 160 94 82 72 61 59 39 34 29 21 11 8</canonical_bands>
                <polymorphic_bands>166 164 160 94 83 82 61 59 39 34 29 21 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACACTCAAGTGTTACTTCTCTCC</pcr_primer_p1>
		<pcr_primer_p2>AACATGGAAACATACGAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTT</canonical_amplicon>
		<polymorphic_amplicon>ACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAARATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25704</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>299839</contig_pos>
        <strand></strand>
        <context>AAAAMRATTT[T/C]GGACCAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTT</left_flank>
        <right_flank>GGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTCAGAAGTCCCGTTGTGCTGAAAATGTTTAAAAAAACGTGTTTCAGAAATCGGTAAATATCTGAAAAACTAGGAATTTTCTAATTCTGTCAATGCAAAGATGTCAATCTAAGTCTGATTCACACACTCCCAAAGTTTCAAAAAATTCCTATTAGTTCCTTGCGGGCCTTCCGAGCCCGGCTAGGCCTTCAACGATTTTGGCAATTTTGCGGAAAATAGTCAAAATTTACGGGAAAATATGTATTTTAAAGATGAGTGATTCAATTTTTTTTAAAATCTAGATTCTCTAAAAATTCATGACACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTTGCGATGACGACCTCTTTCTTTGTCCTTTTCTTTTCCCACAAAAAAGGACCCACCTTTCTTTTTCTTTTTATGCTTTACTCTTCTTTTTTTACACACAGCACGCATACACTAAAATTCAAAAAGGAGGGGATAGAGAAGAGAAAGAAAAAGCAGAAGCAAGGGATAAAAGAAGAAGAAAGTCTCAAAAAGAGAAGATATACACAAAATGAACGTTCAAAAAGAGTAATATTGTTTTTGGGGTCTGACAAGATAAAGTGAAAACAGGAAACATTTTAAAAAATTAATATGAGTGAAACCTTCAAATGAGTTCTATGTCCAGTCTTTCTTATTGAATAGCAAATATCATTTAACAATGAAAAGGTGTGTATAGACTTGTTCAAACAAAACAAACATTTATCAGACTTGTTTTTCCTCAGAAATAATAGTCAGAAGCAAATGAACGGGAAT</canonical>
            <polymorphic>GTTTTCAGAAGTCCCGTTGTGCTGAAAATGTTTAAAAAAACGTGTTTCAGAAATCGGTAAATATCTGAAAAACTAGGAATTTTCTAATTCTGTCAATGCAAAGATGTCAATCTAAGTCTGATTCACACACTCCCAAAGTTTCAAAAAATTCCTATTAGTTCCTTGCGGGCCTTCCGAGCCCGGCTAGGCCTTCAACGATTTTGGCAATTTTGCGGAAAATAGTCAAAATTTACGGGAAAATATGTATTTTAAAGATGAGTGATTCAATTTTTTTTAAAATCTAGATTCTCTAAAAATTCATGACACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTYGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTTGCGATGACGACCTCTTTCTTTGTCCTTTTCTTTTCCCACAAAAAAGGACCCACCTTTCTTTTTCTTTTTATGCTTTACTCTTCTTTTTTTACACACAGCACGCATACACTAAAATTCAAAAAGGAGGGGATAGAGAAGAGAAAGAAAAAGCAGAAGCAAGGGATAAAAGAAGAAGAAAGTCTCAAAAAGAGAAGATATACACAAAATGAACGTTCAAAAAGAGTAATATTGTTTTTGGGGTCTGACAAGATAAAGTGAAAACAGGAAACATTTTAAAAAATTAATATGAGTGAAACCTTCAAATGAGTTCTATGTCCAGTCTTTCTTATTGAATAGCAAATATCATTTAACAATGAAAAGGTGTGTATAGACTTGTTCAAACAAAACAAACATTTATCAGACTTGTTTTTCCTCAGAAATAATAGTCAGAAGCAAATGAACGGGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACTCAAGTGTTACTTCTCTCC</pcr_primer_p1>
		<pcr_primer_p2>AACATGGAAACATACGAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTT</canonical_amplicon>
		<polymorphic_amplicon>ACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTYGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25705</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>299910</contig_pos>
        <strand>+</strand>
        <context>CGACCTCTTT[C/T]TTTGTCCTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTTTTTTCTTCTTTTTCGTATGTTTCCATGTTGCGATGACGACCTCTTT</left_flank>
        <right_flank>TTTGTCCTTTTCTTTTCCCACAAAAAAGGACCCACCTTTCTTTTTCTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTAGGAATTTTCTAATTCTGTCAATGCAAAGATGTCAATCTAAGTCTGATTCACACACTCCCAAAGTTTCAAAAAATTCCTATTAGTTCCTTGCGGGCCTTCCGAGCCCGGCTAGGCCTTCAACGATTTTGGCAATTTTGCGGAAAATAGTCAAAATTTACGGGAAAATATGTATTTTAAAGATGAGTGATTCAATTTTTTTTAAAATCTAGATTCTCTAAAAATTCATGACACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTTGCGATGACGACCTCTTTCTTTGTCCTTTTCTTTTCCCACAAAAAAGGACCCACCTTTCTTTTTCTTTTTATGCTTTACTCTTCTTTTTTTACACACAGCACGCATACACTAAAATTCAAAAAGGAGGGGATAGAGAAGAGAAAGAAAAAGCAGAAGCAAGGGATAAAAGAAGAAGAAAGTCTCAAAAAGAGAAGATATACACAAAATGAACGTTCAAAAAGAGTAATATTGTTTTTGGGGTCTGACAAGATAAAGTGAAAACAGGAAACATTTTAAAAAATTAATATGAGTGAAACCTTCAAATGAGTTCTATGTCCAGTCTTTCTTATTGAATAGCAAATATCATTTAACAATGAAAAGGTGTGTATAGACTTGTTCAAACAAAACAAACATTTATCAGACTTGTTTTTCCTCAGAAATAATAGTCAGAAGCAAATGAACGGGAATTCTTATCCCCTTGACGACGACGATTCCGGTCACCAACGTGTCGCCAACGCGGAGGGTTGAAATGTTTTGTT</canonical>
            <polymorphic>ACTAGGAATTTTCTAATTCTGTCAATGCAAAGATGTCAATCTAAGTCTGATTCACACACTCCCAAAGTTTCAAAAAATTCCTATTAGTTCCTTGCGGGCCTTCCGAGCCCGGCTAGGCCTTCAACGATTTTGGCAATTTTGCGGAAAATAGTCAAAATTTACGGGAAAATATGTATTTTAAAGATGAGTGATTCAATTTTTTTTAAAATCTAGATTCTCTAAAAATTCATGACACACTCAAGTGTTACTTCTCTCCTAATTCAGGCCTATCTCTCACTTCACCTGTCATCTCACCTGACGTCAGACTTTTTTCTCGAAAATGGAGAGAAAAAAAAGAGAAATAATAATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTTGCGATGACGACCTCTTTYTTTGTCCTTTTCTTTTCCCACAAAAAAGGACCCACCTTTCTTTTTCTTTTTATGCTTTACTCTTCTTTTTTTACACACAGCACGCATACACTAAAATTCAAAAAGGAGGGGATAGAGAAGAGAAAGAAAAAGCAGAAGCAAGGGATAAAAGAAGAAGAAAGTCTCAAAAAGAGAAGATATACACAAAATGAACGTTCAAAAAGAGTAATATTGTTTTTGGGGTCTGACAAGATAAAGTGAAAACAGGAAACATTTTAAAAAATTAATATGAGTGAAACCTTCAAATGAGTTCTATGTCCAGTCTTTCTTATTGAATAGCAAATATCATTTAACAATGAAAAGGTGTGTATAGACTTGTTCAAACAAAACAAACATTTATCAGACTTGTTTTTCCTCAGAAATAATAGTCAGAAGCAAATGAACGGGAATTCTTATCCCCTTGACGACGACGATTCCGGTCACCAACGTGTCGCCAACGCGGAGGGTTGAAATGTTTTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAATAATTGCACCTGAACTCAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTAGTGTATGCGTGCTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTTGCGATGACGACCTCTTTCTTTGTCCTTTTCTTTTCCCACAAAAAAGGACCCACCTTTCTTTTTCTTTTTATGCTTTACTCTTCTTTTTTTACACACAGCACGCATACACTAAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATAATAATTGCACCTGAACTCACCTAGAAAAAAAACTGAACTCTTCATTTCCTTTTTTTTTGTCCCCTTGCAAAAAAAATTTTGGACCAATTTGGTTTCTGCTCGTTTTTTCTTCTTTTTCGTATGTTTCCATGTTGCGATGACGACCTCTTTYTTTGTCCTTTTCTTTTCCCACAAAAAAGGACCCACCTTTCTTTTTCTTTTTATGCTTTACTCTTCTTTTTTTACACACAGCACGCATACACTAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25706</snp_id>
        <super_contig>c001601166.Contig1</super_contig>
        <contig_pos>303272</contig_pos>
        <strand>+</strand>
        <context>AAGATTGAAA[A/G]ATCAAAAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAGGTAATGAAAAATGGGCGAAATGAGAAATAGAAAAAAAAGATTGAAA</left_flank>
        <right_flank>ATCAAAAACTGAATAGTTAGAATTACTTCAATTGATAACAATTTATGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCATCATAATAAGGTAAAAACAAGTTTTCCGGAAAATAAGTTACTGAACTTGTCTGGAAGATAATAATCTTCTCCATTATTCCCCAAATTTTTAGTCACCCAAAAAATTTATATTCAAGAGAAAAAAAAACGTTTTCTGAGATGTTCTCATTTCTTTTCGGTTGACTGAATAACTTTGGGATCTTACCTCGATCAACTCGAACCATTTTCCTTTTTTCTTTGTTGTCGAAATTTTAGTTTAGTAAGAGTAAGTGGTCATTGGTGTTTTGGTATGTGAGTTTTAGAAAAAAAGCTTTGAGGGAATGACCATCATTTCTTTTTTTCTCATTTTTCACATTGTTTAGGAAGTTGCCTGGTAACTGAAGTTGAGCCAGTCCTAATGAATAATTGAAGCAAAATGTGTACATGGAAAACCGTGACAATGATGTAGCACCTAAAAACTTGTGAAGTAGGTAATGAAAAATGGGCGAAATGAGAAATAGAAAAAAAAGATTGAAATATCAAAAACTGAATAGTTAGAATTACTTCAATTGATAACAATTTATGAAAAATGAATTTTATTTTTTCAGAGTAGTATTTTGTAATACATTTTCAAAAACAATTGAAAAACTTGTTTCAAAGCATTTTATAAAAACTTTGAGCATGAATTTGTGAGTTCTTTAAAAAAAACAATTATTTCACAATCAATTCTCATCCTGGAAACTTTGAAGCTTAAAAACATTGTTAATGTAGTTCATATAAAATTTTGACATAGGAAATATCCGATTTAAGTTTCAAATATCATTAATAAGGTCATTGATAAACCAAAAATTCCGTTAAAACCGTAAAACTTGCAACACTATAATTTTTAACAAGTAAAGTCTGTTTTTCAGAGTTAGGCAGCATTTTCAATATATAACAGTGTAGAATCACAATGCATTAACTCTAATTTTCTGTAATTCTGCGTCCTTATCACCAAATAGTTCCAAAACCCCAACATCGAAAATGCGGTCCGAGATT</canonical>
            <polymorphic>GTCATCATAATAAGGTAAAAACAAGTTTTCCGGAAAATAAGTTACTGAACTTGTCTGGAAGATAATAATCTTCTCCATTATTCCCCAAATTTTTAGTCACCCAAAAAATTTATATTCAAGAGAAAAAAAAACGTTTTCTGAGATGTTCTCATTTCTTTTCGGTTGACTGAATAACTTTGGGATCTTACCTCGATCAACTCGAACCATTTTCCTTTTTTCTTTGTTGTCGAAATTTTAGTTTAGTAAGAGTAAGTGGTCATTGGTGTTTTGGTATGTGAGTTTTAGAAAAAAAGCTTTGAGGGAATGACCATCATTTCTTTTTTTCTCATTTTTCACATTGTTTAGGAAGTTGCCTGGTAACTGAAGTTGAGCCAGTCCTAATGAATAATTGAAGCAAAATGTGTACATGGAAAACCGTGACAATGATGTAGCACCTAAAAACTTGTGAAGTAGGTAATGAAAAATGGGCGAAATGAGAAATAGAAAAAAAAGATTGAAARATCAAAAACTGAATAGTTAGAATTACTTCAATTGATAACAATTTATGAAAAATGAATTTTATTTTTTCAGAGTAGTATTTTGTAATACATTTTCAAAAACAATTGAAAAACTTGTTTCAAAGCATTTTATAAAAACTTTGAGCATGAATTTGTGAGTTCTTTAAAAAAAACAATTATTTCACAATCAATTCTCATCCTGGAAACTTTGAAGCTTAAAAACATTGTTAATGTAGTTCATATAAAATTTTGACATAGGAAATATCCGATTTAAGTTTCAAATATCATTAATAAGGTCATTGATAAACCAAAAATTCCGTTAAAACCGTAAAACTTGCAACACTATAATTTTTAACAAGTAAAGTCTGTTTTTCAGAGTTAGGCAGCATTTTCAATATATAACAGTGTAGAATCACAATGCATTAACTCTAATTTTCTGTAATTCTGCGTCCTTATCACCAAATAGTTCCAAAACCCCAACATCGAAAATGCGGTCCGAGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGCCAGTCCTAATGAATAAT</pcr_primer_p1>
		<pcr_primer_p2>AACAAGTTTTTCAATTGTTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAGCCAGTCCTAATGAATAATTGAAGCAAAATGTGTACATGGAAAACCGTGACAATGATGTAGCACCTAAAAACTTGTGAAGTAGGTAATGAAAAATGGGCGAAATGAGAAATAGAAAAAAAAGATTGAAATATCAAAAACTGAATAGTTAGAATTACTTCAATTGATAACAATTTATGAAAAATGAATTTTATTTTTTCAGAGTAGTATTTTGTAATACATTTTCAAAAACAATTGAAAAACTTGTT</canonical_amplicon>
		<polymorphic_amplicon>TGAGCCAGTCCTAATGAATAATTGAAGCAAAATGTGTACATGGAAAACCGTGACAATGATGTAGCACCTAAAAACTTGTGAAGTAGGTAATGAAAAATGGGCGAAATGAGAAATAGAAAAAAAAGATTGAAARATCAAAAACTGAATAGTTAGAATTACTTCAATTGATAACAATTTATGAAAAATGAATTTTATTTTTTCAGAGTAGTATTTTGTAATACATTTTCAAAAACAATTGAAAAACTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25707</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>15310</contig_pos>
        <strand></strand>
        <context>CCTTGGTCCC[T/C]ACGTCCCTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCTTGGTCCCTACGTCCTCTGGTCCCTTGGTCCCTTGGTCCCTTGGTCCC</left_flank>
        <right_flank>ACGTCCCTTGGTCGCTCAGTTCCCCCTCAAAAGTTTCTCATCCCTCCCGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATAAACTTAGTGGGAGGTACTAGTAAGTTGCAAATTGGACAGATAAACTAGAGAGATCAAGAAACAGCTTTTTTTTGGGAAGATTTTTAAAAAGGCAGCCCAAAGCTCAACTATCTCGGCTATTTGAAAAGATATCAAAAATCTTTCAACTGATAAAATGTTTATCATAAAATTAGCAACATTTTATCAGTTGACAAATTTTTGATATCTCTTATAGGAGCGGAGATAATAAAGCTGTAAGTTTGTGTGTTGCAAGGATCACCGGCCTCAGCCAACCTACATACTTTGAGCTCCATTATTTCAATTTCTGTTAATGATATCAAAACTTTATCAACTGATGAATCATGTATCATAATATCCCCAATATTTTACTAGTTGACACAATTTTGATATCTCTTACAGTAAACTAGATATTTGAGTTCCTTGGTCCCTTGGTCGTCCCTTGGTCCCTTGGTCCCTACGTCCTCTGGTCCCTTGGTCCCTTGGTCCCTTGGTCCCTACGTCCCTTGGTCGCTCAGTTCCCCCTCAAAAGTTTCTCATCCCTCCCGAGGATGTTCCAAATTCATGAAAAAGTGCACATCTCCTTTTTTGGGGAAGTAGTAGCTTGCCCCTAATCCCCCTGGCTCGGTACCTGTCACTGCTCCGCCCCGCGTCATCACTGGTCACTTGCACTCTTTATTTTTTTTCTCGCGCTCTATCTATCTTCTAGGCTTGGTGCCATGCTCCTCCAGGCCGTTCCCGACTCCTCCCCAAGGGTGCCAGTGTACTTTTTTCGGCTCCAAAGGCACTCTTTTTTCTCTCTTCCGCCGTCTAATTCTCTTCGGTGCCATGTTGCGGAATTCTGGAGAAGAATAAGAGGGGGCAGAGATAAAAAAGTGCAGTGTCAAAACAACTTGGAGGCAAGAAGAAGAAGATACGGTGACTGGCACGGTGGTTGAGAAGAAGAAGAAGAACTAGTGATAAGAAAAGATAGTGAGAGAGATAAGGAAATTTTGAGAG</canonical>
            <polymorphic>CATAAACTTAGTGGGAGGTACTAGTAAGTTGCAAATTGGACAGATAAACTAGAGAGATCAAGAAACAGCTTTTTTTTGGGAAGATTTTTAAAAAGGCAGCCCAAAGCTCAACTATCTCGGCTATTTGAAAAGATATCAAAAATCTTTCAACTGATAAAATGTTTATCATAAAATTAGCAACATTTTATCAGTTGACAAATTTTTGATATCTCTTATAGGAGCGGAGATAATAAAGCTGTAAGTTTGTGTGTTGCAAGGATCACCGGCCTCAGCCAACCTACATACTTTGAGCTCCATTATTTCAATTTCTGTTAATGATATCAAAACTTTATCAACTGATGAATCATGTATCATAATATCCCCAATATTTTACTAGTTGACACAATTTTGATATCTCTTACAGTAAACTAGATATTTGAGTTCCTTGGTCCCTTGGTCGTCCCTTGGTCCCTTGGTCCCTACGTCCTCTGGTCCCTTGGTCCCTTGGTCCCTTGGTCCCYACGTCCCTTGGTCGCTCAGTTCCCCCTCAAAAGTTTCTCATCCCTCCCGAGGATGTTCCAAATTCATGAAAAAGTGCACATCTCCTTTTTTGGGGAAGTAGTAGCTTGCCCCTAATCCCCCTGGCTCGGTACCTGTCACTGCTCCGCCCCGCGTCATCACTGGTCACTTGCACTCTTTATTTTTTTTCTCGCGCTCTATCTATCTTCTAGGCTTGGTGCCATGCTCCTCCAGGCCGTTCCCGACTCCTCCCCAAGGGTGCCAGTGTACTTTTTTCGGCTCCAAAGGCACTCTTTTTTCTCTCTTCCGCCGTCTAATTCTCTTCGGTGCCATGTTGCGGAATTCTGGAGAAGAATAAGAGGGGGCAGAGATAAAAAAGTGCAGTGTCAAAACAACTTGGAGGCAAGAAGAAGAAGATACGGTGACTGGCACGGTGGTTGAGAAGAAGAAGAAGAACTAGTGATAAGAAAAGATAGTGAGAGAGATAAGGAAATTTTGAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTAGAGAGATCAAGAAACAGC</pcr_primer_p1>
		<pcr_primer_p2>CATGAATTTGGAACATCCTC</pcr_primer_p2>
		<pcr_amplicon_size>523</pcr_amplicon_size>
		<canonical_amplicon>AAACTAGAGAGATCAAGAAACAGCTTTTTTTTGGGAAGATTTTTAAAAAGGCAGCCCAAAGCTCAACTATCTCGGCTATTTGAAAAGATATCAAAAATCTTTCAACTGATAAAATGTTTATCATAAAATTAGCAACATTTTATCAGTTGACAAATTTTTGATATCTCTTATAGGAGCGGAGATAATAAAGCTGTAAGTTTGTGTGTTGCAAGGATCACCGGCCTCAGCCAACCTACATACTTTGAGCTCCATTATTTCAATTTCTGTTAATGATATCAAAACTTTATCAACTGATGAATCATGTATCATAATATCCCCAATATTTTACTAGTTGACACAATTTTGATATCTCTTACAGTAAACTAGATATTTGAGTTCCTTGGTCCCTTGGTCGTCCCTTGGTCCCTTGGTCCCTACGTCCTCTGGTCCCTTGGTCCCTTGGTCCCTTGGTCCCTACGTCCCTTGGTCGCTCAGTTCCCCCTCAAAAGTTTCTCATCCCTCCCGAGGATGTTCCAAATTCATG</canonical_amplicon>
		<polymorphic_amplicon>AAACTAGAGAGATCAAGAAACAGCTTTTTTTTGGGAAGATTTTTAAAAAGGCAGCCCAAAGCTCAACTATCTCGGCTATTTGAAAAGATATCAAAAATCTTTCAACTGATAAAATGTTTATCATAAAATTAGCAACATTTTATCAGTTGACAAATTTTTGATATCTCTTATAGGAGCGGAGATAATAAAGCTGTAAGTTTGTGTGTTGCAAGGATCACCGGCCTCAGCCAACCTACATACTTTGAGCTCCATTATTTCAATTTCTGTTAATGATATCAAAACTTTATCAACTGATGAATCATGTATCATAATATCCCCAATATTTTACTAGTTGACACAATTTTGATATCTCTTACAGTAAACTAGATATTTGAGTTCCTTGGTCCCTTGGTCGTCCCTTGGTCCCTTGGTCCCTACGTCCTCTGGTCCCTTGGTCCCTTGGTCCCTTGGTCCCYACGTCCCTTGGTCGCTCAGTTCCCCCTCAAAAGTTTCTCATCCCTCCCGAGGATGTTCCAAATTCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25708</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>43518</contig_pos>
        <strand>+</strand>
        <context>AACGGACGAG[A/C]TTTTTCCTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAG</left_flank>
        <right_flank>TTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAAT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAAATACACGATGACAAATCTTCTGGACTTTTATAGGTGAGCCAACCCATCGCATGACTCATTGTCCATTGTTGTGCACTTCGCTGCGCAACCAACATATAAAAAAGGTTGCAGAATGAGAAGGTGGTACAAATAAACAAACAGTGGTGGTGGTGGTGAGCCGATGTGCAAATGTGTCGTAGAGAGAATGGATCATTATAAAGGATGTGTCATTTGCTAAGAATTTTGAGATGGTTTTATACTTTTTGGGTTCAGCGCGGTGGGTTGGGACAAAAGGAGCTAGAGGTTTGAACTTTTCGGATGGTACTATTCTTTGAACTATTCGGGGGGTGACAAATCTAAGTAAATAGGATAGAATGAGCAATATTTAATTTCATTGATACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAAATAAAGTTTTGAAAAGTGTGACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAAAGACGTGATTTTTGCAAAGTTTAGAAGTTTCTGGAACTTTTAAGAAACATTTTCCCATAGTTTATAGTTTATAGATGATCCTGGAATTTCGTCACTTTA</canonical>
            <polymorphic>AAAAAAAATACACGATGACAAATCTTCTGGACTTTTATAGGTGAGCCAACCCATCGCATGACTCATTGTCCATTGTTGTGCACTTCGCTGCGCAACCAACATATAAAAAAGGTTGCAGAATGAGAAGGTGGTACAAATAAACAAACAGTGGTGGTGGTGGTGAGCCGATGTGCAAATGTGTCGTAGAGAGAATGGATCATTATAAAGGATGTGTCATTTGCTAAGAATTTTGAGATGGTTTTATACTTTTTGGGTTCAGCGCGGTGGGTTGGGACAAAAGGAGCTAGAGGTTTGAACTTTTCGGATGGTACTATTCTTTGAACTATTCGGGGGGTGACAAATCTAAGTAAATAGGATAGAATGAGCAATATTTAATTTCATTGATACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGMTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAAATAAAGTTTTGAAAAGTGTGACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAAAGACGTGATTTTTGCAAAGTTTAGAAGTTTCTGGAACTTTTAAGAAACATTTTCCCATAGTTTATAGTTTATAGATGATCCTGGAATTTCGTCACTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>341 283 216 160</canonical_bands>
                <polymorphic_bands>376 341 283</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>341 160 141 119 119 45 45 5 5 5 5 5 5</canonical_bands>
                <polymorphic_bands>341 205 141 119 119 45 5 5 5 5 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATAGAATGAGCAATATTTAATTTCA</pcr_primer_p1>
		<pcr_primer_p2>CTTTAGTTTTGGTATTTTGGACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATAGAATGAGCAATATTTAATTTCATTGATACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAG</canonical_amplicon>
		<polymorphic_amplicon>GATAGAATGAGCAATATTTAATTTCATTGATACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGMTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25709</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>43533</contig_pos>
        <strand>+</strand>
        <context>TCCTCTGTGT[A/G]CAGGTTTGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGT</left_flank>
        <right_flank>CAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACAAATCTTCTGGACTTTTATAGGTGAGCCAACCCATCGCATGACTCATTGTCCATTGTTGTGCACTTCGCTGCGCAACCAACATATAAAAAAGGTTGCAGAATGAGAAGGTGGTACAAATAAACAAACAGTGGTGGTGGTGGTGAGCCGATGTGCAAATGTGTCGTAGAGAGAATGGATCATTATAAAGGATGTGTCATTTGCTAAGAATTTTGAGATGGTTTTATACTTTTTGGGTTCAGCGCGGTGGGTTGGGACAAAAGGAGCTAGAGGTTTGAACTTTTCGGATGGTACTATTCTTTGAACTATTCGGGGGGTGACAAATCTAAGTAAATAGGATAGAATGAGCAATATTTAATTTCATTGATACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAAATAAAGTTTTGAAAAGTGTGACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAAAGACGTGATTTTTGCAAAGTTTAGAAGTTTCTGGAACTTTTAAGAAACATTTTCCCATAGTTTATAGTTTATAGATGATCCTGGAATTTCGTCACTTTATCATTTTCTGATATC</canonical>
            <polymorphic>TGACAAATCTTCTGGACTTTTATAGGTGAGCCAACCCATCGCATGACTCATTGTCCATTGTTGTGCACTTCGCTGCGCAACCAACATATAAAAAAGGTTGCAGAATGAGAAGGTGGTACAAATAAACAAACAGTGGTGGTGGTGGTGAGCCGATGTGCAAATGTGTCGTAGAGAGAATGGATCATTATAAAGGATGTGTCATTTGCTAAGAATTTTGAGATGGTTTTATACTTTTTGGGTTCAGCGCGGTGGGTTGGGACAAAAGGAGCTAGAGGTTTGAACTTTTCGGATGGTACTATTCTTTGAACTATTCGGGGGGTGACAAATCTAAGTAAATAGGATAGAATGAGCAATATTTAATTTCATTGATACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTRCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAAATAAAGTTTTGAAAAGTGTGACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAAAGACGTGATTTTTGCAAAGTTTAGAAGTTTCTGGAACTTTTAAGAAACATTTTCCCATAGTTTATAGTTTATAGATGATCCTGGAATTTCGTCACTTTATCATTTTCTGATATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>238 178 150 105 100 72 65 57 35</canonical_bands>
                <polymorphic_bands>283 238 150 100 72 65 57 35</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>137 107 104 87 87 70 70 53 51 48 37 33 28 20 20 12 10 8 3 3 3 3 2 2 2</canonical_bands>
                <polymorphic_bands>139 107 104 87 87 70 70 53 51 48 37 33 28 20 20 12 10 8 3 3 3 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATAGAATGAGCAATATTTAATTTCA</pcr_primer_p1>
		<pcr_primer_p2>CTTTAGTTTTGGTATTTTGGACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATAGAATGAGCAATATTTAATTTCATTGATACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAG</canonical_amplicon>
		<polymorphic_amplicon>GATAGAATGAGCAATATTTAATTTCATTGATACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTRCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25710</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>43551</contig_pos>
        <strand>+</strand>
        <context>GTCCAAAAGT[A/G]CAGAGATATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGT</left_flank>
        <right_flank>CAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTATAGGTGAGCCAACCCATCGCATGACTCATTGTCCATTGTTGTGCACTTCGCTGCGCAACCAACATATAAAAAAGGTTGCAGAATGAGAAGGTGGTACAAATAAACAAACAGTGGTGGTGGTGGTGAGCCGATGTGCAAATGTGTCGTAGAGAGAATGGATCATTATAAAGGATGTGTCATTTGCTAAGAATTTTGAGATGGTTTTATACTTTTTGGGTTCAGCGCGGTGGGTTGGGACAAAAGGAGCTAGAGGTTTGAACTTTTCGGATGGTACTATTCTTTGAACTATTCGGGGGGTGACAAATCTAAGTAAATAGGATAGAATGAGCAATATTTAATTTCATTGATACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAAATAAAGTTTTGAAAAGTGTGACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAAAGACGTGATTTTTGCAAAGTTTAGAAGTTTCTGGAACTTTTAAGAAACATTTTCCCATAGTTTATAGTTTATAGATGATCCTGGAATTTCGTCACTTTATCATTTTCTGATATCATTTTCTCTGAAAACTTA</canonical>
            <polymorphic>TTTATAGGTGAGCCAACCCATCGCATGACTCATTGTCCATTGTTGTGCACTTCGCTGCGCAACCAACATATAAAAAAGGTTGCAGAATGAGAAGGTGGTACAAATAAACAAACAGTGGTGGTGGTGGTGAGCCGATGTGCAAATGTGTCGTAGAGAGAATGGATCATTATAAAGGATGTGTCATTTGCTAAGAATTTTGAGATGGTTTTATACTTTTTGGGTTCAGCGCGGTGGGTTGGGACAAAAGGAGCTAGAGGTTTGAACTTTTCGGATGGTACTATTCTTTGAACTATTCGGGGGGTGACAAATCTAAGTAAATAGGATAGAATGAGCAATATTTAATTTCATTGATACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTRCAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAAATAAAGTTTTGAAAAGTGTGACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAAAGACGTGATTTTTGCAAAGTTTAGAAGTTTCTGGAACTTTTAAGAAACATTTTCCCATAGTTTATAGTTTATAGATGATCCTGGAATTTCGTCACTTTATCATTTTCTGATATCATTTTCTCTGAAAACTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>364 223 177 137 99</canonical_bands>
                <polymorphic_bands>364 360 177 99</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>497 366 137</canonical_bands>
                <polymorphic_bands>634 366</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATAGAATGAGCAATATTTAATTTCA</pcr_primer_p1>
		<pcr_primer_p2>CTTTAGTTTTGGTATTTTGGACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATAGAATGAGCAATATTTAATTTCATTGATACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAG</canonical_amplicon>
		<polymorphic_amplicon>GATAGAATGAGCAATATTTAATTTCATTGATACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTRCAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25711</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>43581</contig_pos>
        <strand>+</strand>
        <context>ACCTAGATGT[C/T]CTATCTTCYT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGT</left_flank>
        <right_flank>CTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTGTCCATTGTTGTGCACTTCGCTGCGCAACCAACATATAAAAAAGGTTGCAGAATGAGAAGGTGGTACAAATAAACAAACAGTGGTGGTGGTGGTGAGCCGATGTGCAAATGTGTCGTAGAGAGAATGGATCATTATAAAGGATGTGTCATTTGCTAAGAATTTTGAGATGGTTTTATACTTTTTGGGTTCAGCGCGGTGGGTTGGGACAAAAGGAGCTAGAGGTTTGAACTTTTCGGATGGTACTATTCTTTGAACTATTCGGGGGGTGACAAATCTAAGTAAATAGGATAGAATGAGCAATATTTAATTTCATTGATACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAAATAAAGTTTTGAAAAGTGTGACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAAAGACGTGATTTTTGCAAAGTTTAGAAGTTTCTGGAACTTTTAAGAAACATTTTCCCATAGTTTATAGTTTATAGATGATCCTGGAATTTCGTCACTTTATCATTTTCTGATATCATTTTCTCTGAAAACTTAAGCTCTTGGTGAGAAAGATGTGAATGACAA</canonical>
            <polymorphic>CATTGTCCATTGTTGTGCACTTCGCTGCGCAACCAACATATAAAAAAGGTTGCAGAATGAGAAGGTGGTACAAATAAACAAACAGTGGTGGTGGTGGTGAGCCGATGTGCAAATGTGTCGTAGAGAGAATGGATCATTATAAAGGATGTGTCATTTGCTAAGAATTTTGAGATGGTTTTATACTTTTTGGGTTCAGCGCGGTGGGTTGGGACAAAAGGAGCTAGAGGTTTGAACTTTTCGGATGGTACTATTCTTTGAACTATTCGGGGGGTGACAAATCTAAGTAAATAGGATAGAATGAGCAATATTTAATTTCATTGATACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTYCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAAATAAAGTTTTGAAAAGTGTGACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAAAGACGTGATTTTTGCAAAGTTTAGAAGTTTCTGGAACTTTTAAGAAACATTTTCCCATAGTTTATAGTTTATAGATGATCCTGGAATTTCGTCACTTTATCATTTTCTGATATCATTTTCTCTGAAAACTTAAGCTCTTGGTGAGAAAGATGTGAATGACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACGATCCAATGGGTCTAGT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCAACAAAAAGTTTTAGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTYCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25712</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>43590</contig_pos>
        <strand>+</strand>
        <context>TYCTATCTTC[C/T]TTTGTTATAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTC</left_flank>
        <right_flank>TTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTGTGCACTTCGCTGCGCAACCAACATATAAAAAAGGTTGCAGAATGAGAAGGTGGTACAAATAAACAAACAGTGGTGGTGGTGGTGAGCCGATGTGCAAATGTGTCGTAGAGAGAATGGATCATTATAAAGGATGTGTCATTTGCTAAGAATTTTGAGATGGTTTTATACTTTTTGGGTTCAGCGCGGTGGGTTGGGACAAAAGGAGCTAGAGGTTTGAACTTTTCGGATGGTACTATTCTTTGAACTATTCGGGGGGTGACAAATCTAAGTAAATAGGATAGAATGAGCAATATTTAATTTCATTGATACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAAATAAAGTTTTGAAAAGTGTGACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAAAGACGTGATTTTTGCAAAGTTTAGAAGTTTCTGGAACTTTTAAGAAACATTTTCCCATAGTTTATAGTTTATAGATGATCCTGGAATTTCGTCACTTTATCATTTTCTGATATCATTTTCTCTGAAAACTTAAGCTCTTGGTGAGAAAGATGTGAATGACAATTAGGTTCT</canonical>
            <polymorphic>TTGTTGTGCACTTCGCTGCGCAACCAACATATAAAAAAGGTTGCAGAATGAGAAGGTGGTACAAATAAACAAACAGTGGTGGTGGTGGTGAGCCGATGTGCAAATGTGTCGTAGAGAGAATGGATCATTATAAAGGATGTGTCATTTGCTAAGAATTTTGAGATGGTTTTATACTTTTTGGGTTCAGCGCGGTGGGTTGGGACAAAAGGAGCTAGAGGTTTGAACTTTTCGGATGGTACTATTCTTTGAACTATTCGGGGGGTGACAAATCTAAGTAAATAGGATAGAATGAGCAATATTTAATTTCATTGATACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCYTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAAATAAAGTTTTGAAAAGTGTGACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAAAGACGTGATTTTTGCAAAGTTTAGAAGTTTCTGGAACTTTTAAGAAACATTTTCCCATAGTTTATAGTTTATAGATGATCCTGGAATTTCGTCACTTTATCATTTTCTGATATCATTTTCTCTGAAAACTTAAGCTCTTGGTGAGAAAGATGTGAATGACAATTAGGTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACGATCCAATGGGTCTAGT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCAACAAAAAGTTTTAGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCYTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25713</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>43656</contig_pos>
        <strand>+</strand>
        <context>TGAAAAAATA[A/T]AGTTTTGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAAATA</left_flank>
        <right_flank>AGTTTTGAAAAGTGTGACAAGCTTTTGATGTACATGTTTGCCGAGACTAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACAAACAGTGGTGGTGGTGGTGAGCCGATGTGCAAATGTGTCGTAGAGAGAATGGATCATTATAAAGGATGTGTCATTTGCTAAGAATTTTGAGATGGTTTTATACTTTTTGGGTTCAGCGCGGTGGGTTGGGACAAAAGGAGCTAGAGGTTTGAACTTTTCGGATGGTACTATTCTTTGAACTATTCGGGGGGTGACAAATCTAAGTAAATAGGATAGAATGAGCAATATTTAATTTCATTGATACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAAATAAAGTTTTGAAAAGTGTGACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAAAGACGTGATTTTTGCAAAGTTTAGAAGTTTCTGGAACTTTTAAGAAACATTTTCCCATAGTTTATAGTTTATAGATGATCCTGGAATTTCGTCACTTTATCATTTTCTGATATCATTTTCTCTGAAAACTTAAGCTCTTGGTGAGAAAGATGTGAATGACAATTAGGTTCTAGATTTTTGTCCAGGAAATAATTTAAAATTTCTTAAAATTTCGAAAAGCCAAAACATTTTTTTGAA</canonical>
            <polymorphic>AAACAAACAGTGGTGGTGGTGGTGAGCCGATGTGCAAATGTGTCGTAGAGAGAATGGATCATTATAAAGGATGTGTCATTTGCTAAGAATTTTGAGATGGTTTTATACTTTTTGGGTTCAGCGCGGTGGGTTGGGACAAAAGGAGCTAGAGGTTTGAACTTTTCGGATGGTACTATTCTTTGAACTATTCGGGGGGTGACAAATCTAAGTAAATAGGATAGAATGAGCAATATTTAATTTCATTGATACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAAATAWAGTTTTGAAAAGTGTGACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAAAGACGTGATTTTTGCAAAGTTTAGAAGTTTCTGGAACTTTTAAGAAACATTTTCCCATAGTTTATAGTTTATAGATGATCCTGGAATTTCGTCACTTTATCATTTTCTGATATCATTTTCTCTGAAAACTTAAGCTCTTGGTGAGAAAGATGTGAATGACAATTAGGTTCTAGATTTTTGTCCAGGAAATAATTTAAAATTTCTTAAAATTTCGAAAAGCCAAAACATTTTTTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGATATTTCAAAATTGACCTAGA</pcr_primer_p1>
		<pcr_primer_p2>GCTATCTTGTGACCCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>216</pcr_amplicon_size>
		<canonical_amplicon>AGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAAATAAAGTTTTGAAAAGTGTGACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGC</canonical_amplicon>
		<polymorphic_amplicon>AGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAAATAWAGTTTTGAAAAGTGTGACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25714</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>43712</contig_pos>
        <strand>+</strand>
        <context>ACTATCAATG[A/C]AATTTGAATC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGAAAAGTGTGACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATG</left_flank>
        <right_flank>AATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATCATTATAAAGGATGTGTCATTTGCTAAGAATTTTGAGATGGTTTTATACTTTTTGGGTTCAGCGCGGTGGGTTGGGACAAAAGGAGCTAGAGGTTTGAACTTTTCGGATGGTACTATTCTTTGAACTATTCGGGGGGTGACAAATCTAAGTAAATAGGATAGAATGAGCAATATTTAATTTCATTGATACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAAATAAAGTTTTGAAAAGTGTGACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAAAGACGTGATTTTTGCAAAGTTTAGAAGTTTCTGGAACTTTTAAGAAACATTTTCCCATAGTTTATAGTTTATAGATGATCCTGGAATTTCGTCACTTTATCATTTTCTGATATCATTTTCTCTGAAAACTTAAGCTCTTGGTGAGAAAGATGTGAATGACAATTAGGTTCTAGATTTTTGTCCAGGAAATAATTTAAAATTTCTTAAAATTTCGAAAAGCCAAAACATTTTTTTGAATGAATCGCTTCTATAGAAGTCATGTGAGCCAGAACTAGAAAACTGAAGAGAACTGG</canonical>
            <polymorphic>GATCATTATAAAGGATGTGTCATTTGCTAAGAATTTTGAGATGGTTTTATACTTTTTGGGTTCAGCGCGGTGGGTTGGGACAAAAGGAGCTAGAGGTTTGAACTTTTCGGATGGTACTATTCTTTGAACTATTCGGGGGGTGACAAATCTAAGTAAATAGGATAGAATGAGCAATATTTAATTTCATTGATACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAAATAAAGTTTTGAAAAGTGTGACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGMAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAAAGACGTGATTTTTGCAAAGTTTAGAAGTTTCTGGAACTTTTAAGAAACATTTTCCCATAGTTTATAGTTTATAGATGATCCTGGAATTTCGTCACTTTATCATTTTCTGATATCATTTTCTCTGAAAACTTAAGCTCTTGGTGAGAAAGATGTGAATGACAATTAGGTTCTAGATTTTTGTCCAGGAAATAATTTAAAATTTCTTAAAATTTCGAAAAGCCAAAACATTTTTTTGAATGAATCGCTTCTATAGAAGTCATGTGAGCCAGAACTAGAAAACTGAAGAGAACTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>279 216 178 150 105 72</canonical_bands>
                <polymorphic_bands>328 279 216 105 72</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAGAACTCTAAAACTTTTTGTTG</pcr_primer_p1>
		<pcr_primer_p2>CCCCTGATAGTTCCAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>224</pcr_amplicon_size>
		<canonical_amplicon>TCAGAACTCTAAAACTTTTTGTTGAAAAAATAAAGTTTTGAAAAGTGTGACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGG</canonical_amplicon>
		<polymorphic_amplicon>TCAGAACTCTAAAACTTTTTGTTGAAAAAATAAAGTTTTGAAAAGTGTGACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGMAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25715</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>43734</contig_pos>
        <strand>+</strand>
        <context>AAAAAAAGTT[A/G]GAAAAACGKT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTT</left_flank>
        <right_flank>GAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGCTAAGAATTTTGAGATGGTTTTATACTTTTTGGGTTCAGCGCGGTGGGTTGGGACAAAAGGAGCTAGAGGTTTGAACTTTTCGGATGGTACTATTCTTTGAACTATTCGGGGGGTGACAAATCTAAGTAAATAGGATAGAATGAGCAATATTTAATTTCATTGATACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAAATAAAGTTTTGAAAAGTGTGACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAAAGACGTGATTTTTGCAAAGTTTAGAAGTTTCTGGAACTTTTAAGAAACATTTTCCCATAGTTTATAGTTTATAGATGATCCTGGAATTTCGTCACTTTATCATTTTCTGATATCATTTTCTCTGAAAACTTAAGCTCTTGGTGAGAAAGATGTGAATGACAATTAGGTTCTAGATTTTTGTCCAGGAAATAATTTAAAATTTCTTAAAATTTCGAAAAGCCAAAACATTTTTTTGAATGAATCGCTTCTATAGAAGTCATGTGAGCCAGAACTAGAAAACTGAAGAGAACTGGAGGGAAGAAACAAGAACAATTT</canonical>
            <polymorphic>TTTGCTAAGAATTTTGAGATGGTTTTATACTTTTTGGGTTCAGCGCGGTGGGTTGGGACAAAAGGAGCTAGAGGTTTGAACTTTTCGGATGGTACTATTCTTTGAACTATTCGGGGGGTGACAAATCTAAGTAAATAGGATAGAATGAGCAATATTTAATTTCATTGATACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAAATAAAGTTTTGAAAAGTGTGACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTRGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAAAGACGTGATTTTTGCAAAGTTTAGAAGTTTCTGGAACTTTTAAGAAACATTTTCCCATAGTTTATAGTTTATAGATGATCCTGGAATTTCGTCACTTTATCATTTTCTGATATCATTTTCTCTGAAAACTTAAGCTCTTGGTGAGAAAGATGTGAATGACAATTAGGTTCTAGATTTTTGTCCAGGAAATAATTTAAAATTTCTTAAAATTTCGAAAAGCCAAAACATTTTTTTGAATGAATCGCTTCTATAGAAGTCATGTGAGCCAGAACTAGAAAACTGAAGAGAACTGGAGGGAAGAAACAAGAACAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAGCTTTTGATGTACATGTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGCTCTCTTCCTTCTCATTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAA</canonical_amplicon>
		<polymorphic_amplicon>ACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTRGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25716</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>43743</contig_pos>
        <strand>+</strand>
        <context>TRGAAAAACG[G/T]TCAAAAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACG</left_flank>
        <right_flank>TCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTGAGATGGTTTTATACTTTTTGGGTTCAGCGCGGTGGGTTGGGACAAAAGGAGCTAGAGGTTTGAACTTTTCGGATGGTACTATTCTTTGAACTATTCGGGGGGTGACAAATCTAAGTAAATAGGATAGAATGAGCAATATTTAATTTCATTGATACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAAATAAAGTTTTGAAAAGTGTGACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAAAGACGTGATTTTTGCAAAGTTTAGAAGTTTCTGGAACTTTTAAGAAACATTTTCCCATAGTTTATAGTTTATAGATGATCCTGGAATTTCGTCACTTTATCATTTTCTGATATCATTTTCTCTGAAAACTTAAGCTCTTGGTGAGAAAGATGTGAATGACAATTAGGTTCTAGATTTTTGTCCAGGAAATAATTTAAAATTTCTTAAAATTTCGAAAAGCCAAAACATTTTTTTGAATGAATCGCTTCTATAGAAGTCATGTGAGCCAGAACTAGAAAACTGAAGAGAACTGGAGGGAAGAAACAAGAACAATTTGAGGTAAAA</canonical>
            <polymorphic>AATTTTGAGATGGTTTTATACTTTTTGGGTTCAGCGCGGTGGGTTGGGACAAAAGGAGCTAGAGGTTTGAACTTTTCGGATGGTACTATTCTTTGAACTATTCGGGGGGTGACAAATCTAAGTAAATAGGATAGAATGAGCAATATTTAATTTCATTGATACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAAATAAAGTTTTGAAAAGTGTGACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGKTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAAAGACGTGATTTTTGCAAAGTTTAGAAGTTTCTGGAACTTTTAAGAAACATTTTCCCATAGTTTATAGTTTATAGATGATCCTGGAATTTCGTCACTTTATCATTTTCTGATATCATTTTCTCTGAAAACTTAAGCTCTTGGTGAGAAAGATGTGAATGACAATTAGGTTCTAGATTTTTGTCCAGGAAATAATTTAAAATTTCTTAAAATTTCGAAAAGCCAAAACATTTTTTTGAATGAATCGCTTCTATAGAAGTCATGTGAGCCAGAACTAGAAAACTGAAGAGAACTGGAGGGAAGAAACAAGAACAATTTGAGGTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAGCTTTTGATGTACATGTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGCTCTCTTCCTTCTCATTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAA</canonical_amplicon>
		<polymorphic_amplicon>ACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGKTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25717</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>43777</contig_pos>
        <strand></strand>
        <context>GCAGATTTTG[A/C]AAAAAAARGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTG</left_flank>
        <right_flank>AAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCGGTGGGTTGGGACAAAAGGAGCTAGAGGTTTGAACTTTTCGGATGGTACTATTCTTTGAACTATTCGGGGGGTGACAAATCTAAGTAAATAGGATAGAATGAGCAATATTTAATTTCATTGATACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAAATAAAGTTTTGAAAAGTGTGACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAAAGACGTGATTTTTGCAAAGTTTAGAAGTTTCTGGAACTTTTAAGAAACATTTTCCCATAGTTTATAGTTTATAGATGATCCTGGAATTTCGTCACTTTATCATTTTCTGATATCATTTTCTCTGAAAACTTAAGCTCTTGGTGAGAAAGATGTGAATGACAATTAGGTTCTAGATTTTTGTCCAGGAAATAATTTAAAATTTCTTAAAATTTCGAAAAGCCAAAACATTTTTTTGAATGAATCGCTTCTATAGAAGTCATGTGAGCCAGAACTAGAAAACTGAAGAGAACTGGAGGGAAGAAACAAGAACAATTTGAGGTAAAAGGCACACTGATAAGGGGCAAAAGTGAAGATTTTA</canonical>
            <polymorphic>CGCGGTGGGTTGGGACAAAAGGAGCTAGAGGTTTGAACTTTTCGGATGGTACTATTCTTTGAACTATTCGGGGGGTGACAAATCTAAGTAAATAGGATAGAATGAGCAATATTTAATTTCATTGATACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAAATAAAGTTTTGAAAAGTGTGACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGMAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAAAGACGTGATTTTTGCAAAGTTTAGAAGTTTCTGGAACTTTTAAGAAACATTTTCCCATAGTTTATAGTTTATAGATGATCCTGGAATTTCGTCACTTTATCATTTTCTGATATCATTTTCTCTGAAAACTTAAGCTCTTGGTGAGAAAGATGTGAATGACAATTAGGTTCTAGATTTTTGTCCAGGAAATAATTTAAAATTTCTTAAAATTTCGAAAAGCCAAAACATTTTTTTGAATGAATCGCTTCTATAGAAGTCATGTGAGCCAGAACTAGAAAACTGAAGAGAACTGGAGGGAAGAAACAAGAACAATTTGAGGTAAAAGGCACACTGATAAGGGGCAAAAGTGAAGATTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAGCTTTTGATGTACATGTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGCTCTCTTCCTTCTCATTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAA</canonical_amplicon>
		<polymorphic_amplicon>ACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGMAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25718</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>43785</contig_pos>
        <strand></strand>
        <context>TGMAAAAAAA[G/A]GAATACAAKG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAA</left_flank>
        <right_flank>GAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGGGACAAAAGGAGCTAGAGGTTTGAACTTTTCGGATGGTACTATTCTTTGAACTATTCGGGGGGTGACAAATCTAAGTAAATAGGATAGAATGAGCAATATTTAATTTCATTGATACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAAATAAAGTTTTGAAAAGTGTGACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAAAGACGTGATTTTTGCAAAGTTTAGAAGTTTCTGGAACTTTTAAGAAACATTTTCCCATAGTTTATAGTTTATAGATGATCCTGGAATTTCGTCACTTTATCATTTTCTGATATCATTTTCTCTGAAAACTTAAGCTCTTGGTGAGAAAGATGTGAATGACAATTAGGTTCTAGATTTTTGTCCAGGAAATAATTTAAAATTTCTTAAAATTTCGAAAAGCCAAAACATTTTTTTGAATGAATCGCTTCTATAGAAGTCATGTGAGCCAGAACTAGAAAACTGAAGAGAACTGGAGGGAAGAAACAAGAACAATTTGAGGTAAAAGGCACACTGATAAGGGGCAAAAGTGAAGATTTTATCTTCTTT</canonical>
            <polymorphic>GTTGGGACAAAAGGAGCTAGAGGTTTGAACTTTTCGGATGGTACTATTCTTTGAACTATTCGGGGGGTGACAAATCTAAGTAAATAGGATAGAATGAGCAATATTTAATTTCATTGATACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAAATAAAGTTTTGAAAAGTGTGACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAARGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAAAGACGTGATTTTTGCAAAGTTTAGAAGTTTCTGGAACTTTTAAGAAACATTTTCCCATAGTTTATAGTTTATAGATGATCCTGGAATTTCGTCACTTTATCATTTTCTGATATCATTTTCTCTGAAAACTTAAGCTCTTGGTGAGAAAGATGTGAATGACAATTAGGTTCTAGATTTTTGTCCAGGAAATAATTTAAAATTTCTTAAAATTTCGAAAAGCCAAAACATTTTTTTGAATGAATCGCTTCTATAGAAGTCATGTGAGCCAGAACTAGAAAACTGAAGAGAACTGGAGGGAAGAAACAAGAACAATTTGAGGTAAAAGGCACACTGATAAGGGGCAAAAGTGAAGATTTTATCTTCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAGCTTTTGATGTACATGTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGCTCTCTTCCTTCTCATTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAA</canonical_amplicon>
		<polymorphic_amplicon>ACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAARGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25719</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>43794</contig_pos>
        <strand></strand>
        <context>ARGAATACAA[T/G]GAAGAAGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAA</left_flank>
        <right_flank>GAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGGAGCTAGAGGTTTGAACTTTTCGGATGGTACTATTCTTTGAACTATTCGGGGGGTGACAAATCTAAGTAAATAGGATAGAATGAGCAATATTTAATTTCATTGATACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAAATAAAGTTTTGAAAAGTGTGACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAAAGACGTGATTTTTGCAAAGTTTAGAAGTTTCTGGAACTTTTAAGAAACATTTTCCCATAGTTTATAGTTTATAGATGATCCTGGAATTTCGTCACTTTATCATTTTCTGATATCATTTTCTCTGAAAACTTAAGCTCTTGGTGAGAAAGATGTGAATGACAATTAGGTTCTAGATTTTTGTCCAGGAAATAATTTAAAATTTCTTAAAATTTCGAAAAGCCAAAACATTTTTTTGAATGAATCGCTTCTATAGAAGTCATGTGAGCCAGAACTAGAAAACTGAAGAGAACTGGAGGGAAGAAACAAGAACAATTTGAGGTAAAAGGCACACTGATAAGGGGCAAAAGTGAAGATTTTATCTTCTTTTTTTTCGTC</canonical>
            <polymorphic>AAAGGAGCTAGAGGTTTGAACTTTTCGGATGGTACTATTCTTTGAACTATTCGGGGGGTGACAAATCTAAGTAAATAGGATAGAATGAGCAATATTTAATTTCATTGATACGATCCAATGGGTCTAGTCACATGCAGACAAACAGAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAAGCCAACTGGCATCCAACGGACATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAAATAAAGTTTTGAAAAGTGTGACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAAKGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAAAGACGTGATTTTTGCAAAGTTTAGAAGTTTCTGGAACTTTTAAGAAACATTTTCCCATAGTTTATAGTTTATAGATGATCCTGGAATTTCGTCACTTTATCATTTTCTGATATCATTTTCTCTGAAAACTTAAGCTCTTGGTGAGAAAGATGTGAATGACAATTAGGTTCTAGATTTTTGTCCAGGAAATAATTTAAAATTTCTTAAAATTTCGAAAAGCCAAAACATTTTTTTGAATGAATCGCTTCTATAGAAGTCATGTGAGCCAGAACTAGAAAACTGAAGAGAACTGGAGGGAAGAAACAAGAACAATTTGAGGTAAAAGGCACACTGATAAGGGGCAAAAGTGAAGATTTTATCTTCTTTTTTTTCGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAGCTTTTGATGTACATGTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGCTCTCTTCCTTCTCATTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAA</canonical_amplicon>
		<polymorphic_amplicon>ACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAAKGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25720</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>43991</contig_pos>
        <strand>+</strand>
        <context>TTATAGTTTA[G/T]AGATGATCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAGAAGTTTCTGGAACTTTTAAGAAACATTTTCCCATAGTTTATAGTTTA</left_flank>
        <right_flank>AGATGATCCTGGAATTTCGTCACTTTATCATTTTCTGATATCATTTTCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAAATAAAGTTTTGAAAAGTGTGACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAAAGACGTGATTTTTGCAAAGTTTAGAAGTTTCTGGAACTTTTAAGAAACATTTTCCCATAGTTTATAGTTTATAGATGATCCTGGAATTTCGTCACTTTATCATTTTCTGATATCATTTTCTCTGAAAACTTAAGCTCTTGGTGAGAAAGATGTGAATGACAATTAGGTTCTAGATTTTTGTCCAGGAAATAATTTAAAATTTCTTAAAATTTCGAAAAGCCAAAACATTTTTTTGAATGAATCGCTTCTATAGAAGTCATGTGAGCCAGAACTAGAAAACTGAAGAGAACTGGAGGGAAGAAACAAGAACAATTTGAGGTAAAAGGCACACTGATAAGGGGCAAAAGTGAAGATTTTATCTTCTTTTTTTTCGTCTTGCGAAATTCCTAAAGAAGCGAAAAATGTGTGAAAATGTGTGTGACGAATTCTAACAACTTTTGTGGTTTCCGGTTGCACACAGAGCAAGATTTTTTGGTGAAGAGGAATTTTTCGAAAATCATTAAGACACTTTTACAGTGATCAGAAAATACATAGTCGTGAGGGGCTGGAAAAAACGTGTCAAATTATAGCTT</canonical>
            <polymorphic>CATCCAACGGACATCTAACGGACGAGCTTTTTCCTCTGTGTGCAGGTTTGTCCAAAAGTACAGAGATATTTCAAAATTGACCTAGATGTTCTATCTTCCTTTGTTATATGTCCAAAATACCAAAACTAAAGTTCAGAACTCTAAAACTTTTTGTTGAAAAAATAAAGTTTTGAAAAGTGTGACAAGCTTTTGATGTACATGTTTGCCGAGACTATCAATGCAATTTGAATCGAAAAAAAGTTTGAAAAACGCTCAAAAAAATGGGTCACAAGATAGCAGATTTTGAAAAAAAAGGAATACAATGAAGAAGAAAAAAGGGGAACTGAAAAAATCGGGAAAACTGGAACTATCAGGGGGAAAAAAGAGGATGCACCGGTTGGAGTGTCTCTAATCAGATTAATTACTGATAATGAGAAGGAAGAGAGCAAAGACGTGATTTTTGCAAAGTTTAGAAGTTTCTGGAACTTTTAAGAAACATTTTCCCATAGTTTATAGTTTAKAGATGATCCTGGAATTTCGTCACTTTATCATTTTCTGATATCATTTTCTCTGAAAACTTAAGCTCTTGGTGAGAAAGATGTGAATGACAATTAGGTTCTAGATTTTTGTCCAGGAAATAATTTAAAATTTCTTAAAATTTCGAAAAGCCAAAACATTTTTTTGAATGAATCGCTTCTATAGAAGTCATGTGAGCCAGAACTAGAAAACTGAAGAGAACTGGAGGGAAGAAACAAGAACAATTTGAGGTAAAAGGCACACTGATAAGGGGCAAAAGTGAAGATTTTATCTTCTTTTTTTTCGTCTTGCGAAATTCCTAAAGAAGCGAAAAATGTGTGAAAATGTGTGTGACGAATTCTAACAACTTTTGTGGTTTCCGGTTGCACACAGAGCAAGATTTTTTGGTGAAGAGGAATTTTTCGAAAATCATTAAGACACTTTTACAGTGATCAGAAAATACATAGTCGTGAGGGGCTGGAAAAAACGTGTCAAATTATAGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGATTTTTGCAAAGTTTAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TCTATAGAAGCGATTCATTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGATTTTTGCAAAGTTTAGAAGTTTCTGGAACTTTTAAGAAACATTTTCCCATAGTTTATAGTTTATAGATGATCCTGGAATTTCGTCACTTTATCATTTTCTGATATCATTTTCTCTGAAAACTTAAGCTCTTGGTGAGAAAGATGTGAATGACAATTAGGTTCTAGATTTTTGTCCAGGAAATAATTTAAAATTTCTTAAAATTTCGAAAAGCCAAAACATTTTTTTGAATGAATCGCTTCTATAGA</canonical_amplicon>
		<polymorphic_amplicon>GTGATTTTTGCAAAGTTTAGAAGTTTCTGGAACTTTTAAGAAACATTTTCCCATAGTTTATAGTTTAKAGATGATCCTGGAATTTCGTCACTTTATCATTTTCTGATATCATTTTCTCTGAAAACTTAAGCTCTTGGTGAGAAAGATGTGAATGACAATTAGGTTCTAGATTTTTGTCCAGGAAATAATTTAAAATTTCTTAAAATTTCGAAAAGCCAAAACATTTTTTTGAATGAATCGCTTCTATAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25721</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>44685</contig_pos>
        <strand></strand>
        <context>tggagttcta[C/T]cctatgaaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGTTATAGTTTTTCAATTAATATCATTTTGTAGTACTCGTGGAGTTCTA</left_flank>
        <right_flank>CCTATGAAATTTAGTAGGTCTAAAAATATTGATTCTAAAAGAAACTATGG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAACTAGAAAACTGAAGAGAACTGGAGGGAAGAAACAAGAACAATTTGAGGTAAAAGGCACACTGATAAGGGGCAAAAGTGAAGATTTTATCTTCTTTTTTTTCGTCTTGCGAAATTCCTAAAGAAGCGAAAAATGTGTGAAAATGTGTGTGACGAATTCTAACAACTTTTGTGGTTTCCGGTTGCACACAGAGCAAGATTTTTTGGTGAAGAGGAATTTTTCGAAAATCATTAAGACACTTTTACAGTGATCAGAAAATACATAGTCGTGAGGGGCTGGAAAAAACGTGTCAAATTATAGCTTTTCAGAGGGTTATCAACAATTCAATTATCAGTCTGTAAGTTCTGCGTCAATAAGCAGAGTGACCTCAATATGGTCCATCTAGGGTGGGAGGAGACGAAGCTAAAAGCTCGGTCACTTTATGGCTTGTAACTTAGCTCACAGACGAGTTATAGTTTTTCAATTAATATCATTTTGTAGTACTCGTGGAGTTCTACCCTATGAAATTTAGTAGGTCTAAAAATATTGATTCTAAAAGAAACTATGGCAGGATTTGCGAAGGTCCGGTAAAGGCCCTCCTTTAATCCCCAATTTTCTGATTCGTGCCTTCTTTCTTAATTAAGTGAAATTTAGTTCAAGTGGAAGTCAATTCGTCAACTTTGCACTTGGCCAACTACCCCATCACAACAAAACAGAAAATCTTTTGCCACGAATCAGAATAAGTCCAGAAAAATGAGTTTGGTTATAAACTCCAAAGCATAGACCATGAAACAAACATGTCAATGATCTCCGTTTGGTTTTAGTCGGGAGAGAGAGAGAGAGAGAGAAAATAGCAGAGAGGGTAAGTGATAGCTTAACTGTCAGCTGATGAAGACAAGGTAGTACTAAAGCGCTTAGCTAGAAATTCGGAGCTGTGGTCAAAGTCGTCGGAGGCAGAAATGTTTGCTTCTAGAAAAGGTTCGAGTAGAAGGGTAAAAGAACTATCAGGCTACAATGG</canonical>
            <polymorphic>CAGAACTAGAAAACTGAAGAGAACTGGAGGGAAGAAACAAGAACAATTTGAGGTAAAAGGCACACTGATAAGGGGCAAAAGTGAAGATTTTATCTTCTTTTTTTTCGTCTTGCGAAATTCCTAAAGAAGCGAAAAATGTGTGAAAATGTGTGTGACGAATTCTAACAACTTTTGTGGTTTCCGGTTGCACACAGAGCAAGATTTTTTGGTGAAGAGGAATTTTTCGAAAATCATTAAGACACTTTTACAGTGATCAGAAAATACATAGTCGTGAGGGGCTGGAAAAAACGTGTCAAATTATAGCTTTTCAGAGGGTTATCAACAATTCAATTATCAGTCTGTAAGTTCTGCGTCAATAAGCAGAGTGACCTCAATATGGTCCATCTAGGGTGGGAGGAGACGAAGCTAAAAGCTCGGTCACTTTATGGCTTGTAACTTAGCTCACAGACGAGTTATAGTTTTTCAATTAATATCATTTTGTAGTACTCGTGGAGTTCTAYCCTATGAAATTTAGTAGGTCTAAAAATATTGATTCTAAAAGAAACTATGGCAGGATTTGCGAAGGTCCGGTAAAGGCCCTCCTTTAATCCCCAATTTTCTGATTCGTGCCTTCTTTCTTAATTAAGTGAAATTTAGTTCAAGTGGAAGTCAATTCGTCAACTTTGCACTTGGCCAACTACCCCATCACAACAAAACAGAAAATCTTTTGCCACGAATCAGAATAAGTCCAGAAAAATGAGTTTGGTTATAAACTCCAAAGCATAGACCATGAAACAAACATGTCAATGATCTCCGTTTGGTTTTAGTCGGGAGAGAGAGAGAGAGAGAGAAAATAGCAGAGAGGGTAAGTGATAGCTTAACTGTCAGCTGATGAAGACAAGGTAGTACTAAAGCGCTTAGCTAGAAATTCGGAGCTGTGGTCAAAGTCGTCGGAGGCAGAAATGTTTGCTTCTAGAAAAGGTTCGAGTAGAAGGGTAAAAGAACTATCAGGCTACAATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATAAGCAGAGTGACCTCAATA</pcr_primer_p1>
		<pcr_primer_p2>ATCAGAAAATTGGGGATTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAATAAGCAGAGTGACCTCAATATGGTCCATCTAGGGTGGGAGGAGACGAAGCTAAAAGCTCGGTCACTTTATGGCTTGTAACTTAGCTCACAGACGAGTTATAGTTTTTCAATTAATATCATTTTGTAGTACTCGTGGAGTTCTACCCTATGAAATTTAGTAGGTCTAAAAATATTGATTCTAAAAGAAACTATGGCAGGATTTGCGAAGGTCCGGTAAAGGCCCTCCTTTAATCCCCAATTTTCTGAT</canonical_amplicon>
		<polymorphic_amplicon>CAATAAGCAGAGTGACCTCAATATGGTCCATCTAGGGTGGGAGGAGACGAAGCTAAAAGCTCGGTCACTTTATGGCTTGTAACTTAGCTCACAGACGAGTTATAGTTTTTCAATTAATATCATTTTGTAGTACTCGTGGAGTTCTAYCCTATGAAATTTAGTAGGTCTAAAAATATTGATTCTAAAAGAAACTATGGCAGGATTTGCGAAGGTCCGGTAAAGGCCCTCCTTTAATCCCCAATTTTCTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25722</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>44732</contig_pos>
        <strand></strand>
        <context>aaaagaaact[A/G]tggCAGGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTACCCTATGAAATTTAGTAGGTCTAAAAATATTGATTCTAAAAGAAACT</left_flank>
        <right_flank>TGGCAGGATTTGCGAAGGTCCGGTAAAGGCCCTCCTTTAATCCCCAATTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAGGTAAAAGGCACACTGATAAGGGGCAAAAGTGAAGATTTTATCTTCTTTTTTTTCGTCTTGCGAAATTCCTAAAGAAGCGAAAAATGTGTGAAAATGTGTGTGACGAATTCTAACAACTTTTGTGGTTTCCGGTTGCACACAGAGCAAGATTTTTTGGTGAAGAGGAATTTTTCGAAAATCATTAAGACACTTTTACAGTGATCAGAAAATACATAGTCGTGAGGGGCTGGAAAAAACGTGTCAAATTATAGCTTTTCAGAGGGTTATCAACAATTCAATTATCAGTCTGTAAGTTCTGCGTCAATAAGCAGAGTGACCTCAATATGGTCCATCTAGGGTGGGAGGAGACGAAGCTAAAAGCTCGGTCACTTTATGGCTTGTAACTTAGCTCACAGACGAGTTATAGTTTTTCAATTAATATCATTTTGTAGTACTCGTGGAGTTCTACCCTATGAAATTTAGTAGGTCTAAAAATATTGATTCTAAAAGAAACTATGGCAGGATTTGCGAAGGTCCGGTAAAGGCCCTCCTTTAATCCCCAATTTTCTGATTCGTGCCTTCTTTCTTAATTAAGTGAAATTTAGTTCAAGTGGAAGTCAATTCGTCAACTTTGCACTTGGCCAACTACCCCATCACAACAAAACAGAAAATCTTTTGCCACGAATCAGAATAAGTCCAGAAAAATGAGTTTGGTTATAAACTCCAAAGCATAGACCATGAAACAAACATGTCAATGATCTCCGTTTGGTTTTAGTCGGGAGAGAGAGAGAGAGAGAGAAAATAGCAGAGAGGGTAAGTGATAGCTTAACTGTCAGCTGATGAAGACAAGGTAGTACTAAAGCGCTTAGCTAGAAATTCGGAGCTGTGGTCAAAGTCGTCGGAGGCAGAAATGTTTGCTTCTAGAAAAGGTTCGAGTAGAAGGGTAAAAGAACTATCAGGCTACAATGGTGAGGTGATTTTTAGGGTGGCTATAATACCATTAATCAGTCTGACCA</canonical>
            <polymorphic>TTGAGGTAAAAGGCACACTGATAAGGGGCAAAAGTGAAGATTTTATCTTCTTTTTTTTCGTCTTGCGAAATTCCTAAAGAAGCGAAAAATGTGTGAAAATGTGTGTGACGAATTCTAACAACTTTTGTGGTTTCCGGTTGCACACAGAGCAAGATTTTTTGGTGAAGAGGAATTTTTCGAAAATCATTAAGACACTTTTACAGTGATCAGAAAATACATAGTCGTGAGGGGCTGGAAAAAACGTGTCAAATTATAGCTTTTCAGAGGGTTATCAACAATTCAATTATCAGTCTGTAAGTTCTGCGTCAATAAGCAGAGTGACCTCAATATGGTCCATCTAGGGTGGGAGGAGACGAAGCTAAAAGCTCGGTCACTTTATGGCTTGTAACTTAGCTCACAGACGAGTTATAGTTTTTCAATTAATATCATTTTGTAGTACTCGTGGAGTTCTACCCTATGAAATTTAGTAGGTCTAAAAATATTGATTCTAAAAGAAACTRTGGCAGGATTTGCGAAGGTCCGGTAAAGGCCCTCCTTTAATCCCCAATTTTCTGATTCGTGCCTTCTTTCTTAATTAAGTGAAATTTAGTTCAAGTGGAAGTCAATTCGTCAACTTTGCACTTGGCCAACTACCCCATCACAACAAAACAGAAAATCTTTTGCCACGAATCAGAATAAGTCCAGAAAAATGAGTTTGGTTATAAACTCCAAAGCATAGACCATGAAACAAACATGTCAATGATCTCCGTTTGGTTTTAGTCGGGAGAGAGAGAGAGAGAGAGAAAATAGCAGAGAGGGTAAGTGATAGCTTAACTGTCAGCTGATGAAGACAAGGTAGTACTAAAGCGCTTAGCTAGAAATTCGGAGCTGTGGTCAAAGTCGTCGGAGGCAGAAATGTTTGCTTCTAGAAAAGGTTCGAGTAGAAGGGTAAAAGAACTATCAGGCTACAATGGTGAGGTGATTTTTAGGGTGGCTATAATACCATTAATCAGTCTGACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATAAGCAGAGTGACCTCAATA</pcr_primer_p1>
		<pcr_primer_p2>ATCAGAAAATTGGGGATTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAATAAGCAGAGTGACCTCAATATGGTCCATCTAGGGTGGGAGGAGACGAAGCTAAAAGCTCGGTCACTTTATGGCTTGTAACTTAGCTCACAGACGAGTTATAGTTTTTCAATTAATATCATTTTGTAGTACTCGTGGAGTTCTACCCTATGAAATTTAGTAGGTCTAAAAATATTGATTCTAAAAGAAACTATGGCAGGATTTGCGAAGGTCCGGTAAAGGCCCTCCTTTAATCCCCAATTTTCTGAT</canonical_amplicon>
		<polymorphic_amplicon>CAATAAGCAGAGTGACCTCAATATGGTCCATCTAGGGTGGGAGGAGACGAAGCTAAAAGCTCGGTCACTTTATGGCTTGTAACTTAGCTCACAGACGAGTTATAGTTTTTCAATTAATATCATTTTGTAGTACTCGTGGAGTTCTACCCTATGAAATTTAGTAGGTCTAAAAATATTGATTCTAAAAGAAACTRTGGCAGGATTTGCGAAGGTCCGGTAAAGGCCCTCCTTTAATCCCCAATTTTCTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25723</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>44824</contig_pos>
        <strand>+</strand>
        <context>AAATTTAGTT[C/T]AAGTGGAAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCCAATTTTCTGATTCGTGCCTTCTTTCTTAATTAAGTGAAATTTAGTT</left_flank>
        <right_flank>AAGTGGAAGTCAATTCGTCAACTTTGCACTTGGCCAACTACCCCATCACA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGAAAATGTGTGTGACGAATTCTAACAACTTTTGTGGTTTCCGGTTGCACACAGAGCAAGATTTTTTGGTGAAGAGGAATTTTTCGAAAATCATTAAGACACTTTTACAGTGATCAGAAAATACATAGTCGTGAGGGGCTGGAAAAAACGTGTCAAATTATAGCTTTTCAGAGGGTTATCAACAATTCAATTATCAGTCTGTAAGTTCTGCGTCAATAAGCAGAGTGACCTCAATATGGTCCATCTAGGGTGGGAGGAGACGAAGCTAAAAGCTCGGTCACTTTATGGCTTGTAACTTAGCTCACAGACGAGTTATAGTTTTTCAATTAATATCATTTTGTAGTACTCGTGGAGTTCTACCCTATGAAATTTAGTAGGTCTAAAAATATTGATTCTAAAAGAAACTATGGCAGGATTTGCGAAGGTCCGGTAAAGGCCCTCCTTTAATCCCCAATTTTCTGATTCGTGCCTTCTTTCTTAATTAAGTGAAATTTAGTTCAAGTGGAAGTCAATTCGTCAACTTTGCACTTGGCCAACTACCCCATCACAACAAAACAGAAAATCTTTTGCCACGAATCAGAATAAGTCCAGAAAAATGAGTTTGGTTATAAACTCCAAAGCATAGACCATGAAACAAACATGTCAATGATCTCCGTTTGGTTTTAGTCGGGAGAGAGAGAGAGAGAGAGAAAATAGCAGAGAGGGTAAGTGATAGCTTAACTGTCAGCTGATGAAGACAAGGTAGTACTAAAGCGCTTAGCTAGAAATTCGGAGCTGTGGTCAAAGTCGTCGGAGGCAGAAATGTTTGCTTCTAGAAAAGGTTCGAGTAGAAGGGTAAAAGAACTATCAGGCTACAATGGTGAGGTGATTTTTAGGGTGGCTATAATACCATTAATCAGTCTGACCACCATTTGTACCTATGGAGAAGACAAAGTCGAATGCTACGATTATTTGGAAGCTAGCTTTTATATCCAGCTTCTAACTACCCTTATCTTGTTC</canonical>
            <polymorphic>GTGAAAATGTGTGTGACGAATTCTAACAACTTTTGTGGTTTCCGGTTGCACACAGAGCAAGATTTTTTGGTGAAGAGGAATTTTTCGAAAATCATTAAGACACTTTTACAGTGATCAGAAAATACATAGTCGTGAGGGGCTGGAAAAAACGTGTCAAATTATAGCTTTTCAGAGGGTTATCAACAATTCAATTATCAGTCTGTAAGTTCTGCGTCAATAAGCAGAGTGACCTCAATATGGTCCATCTAGGGTGGGAGGAGACGAAGCTAAAAGCTCGGTCACTTTATGGCTTGTAACTTAGCTCACAGACGAGTTATAGTTTTTCAATTAATATCATTTTGTAGTACTCGTGGAGTTCTACCCTATGAAATTTAGTAGGTCTAAAAATATTGATTCTAAAAGAAACTATGGCAGGATTTGCGAAGGTCCGGTAAAGGCCCTCCTTTAATCCCCAATTTTCTGATTCGTGCCTTCTTTCTTAATTAAGTGAAATTTAGTTYAAGTGGAAGTCAATTCGTCAACTTTGCACTTGGCCAACTACCCCATCACAACAAAACAGAAAATCTTTTGCCACGAATCAGAATAAGTCCAGAAAAATGAGTTTGGTTATAAACTCCAAAGCATAGACCATGAAACAAACATGTCAATGATCTCCGTTTGGTTTTAGTCGGGAGAGAGAGAGAGAGAGAGAAAATAGCAGAGAGGGTAAGTGATAGCTTAACTGTCAGCTGATGAAGACAAGGTAGTACTAAAGCGCTTAGCTAGAAATTCGGAGCTGTGGTCAAAGTCGTCGGAGGCAGAAATGTTTGCTTCTAGAAAAGGTTCGAGTAGAAGGGTAAAAGAACTATCAGGCTACAATGGTGAGGTGATTTTTAGGGTGGCTATAATACCATTAATCAGTCTGACCACCATTTGTACCTATGGAGAAGACAAAGTCGAATGCTACGATTATTTGGAAGCTAGCTTTTATATCCAGCTTCTAACTACCCTTATCTTGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAATCCCCAATTTTCTGAT</pcr_primer_p1>
		<pcr_primer_p2>CTAAAACCAAACGGAGATCAT</pcr_primer_p2>
		<pcr_amplicon_size>224</pcr_amplicon_size>
		<canonical_amplicon>TTTAATCCCCAATTTTCTGATTCGTGCCTTCTTTCTTAATTAAGTGAAATTTAGTTCAAGTGGAAGTCAATTCGTCAACTTTGCACTTGGCCAACTACCCCATCACAACAAAACAGAAAATCTTTTGCCACGAATCAGAATAAGTCCAGAAAAATGAGTTTGGTTATAAACTCCAAAGCATAGACCATGAAACAAACATGTCAATGATCTCCGTTTGGTTTTAG</canonical_amplicon>
		<polymorphic_amplicon>TTTAATCCCCAATTTTCTGATTCGTGCCTTCTTTCTTAATTAAGTGAAATTTAGTTYAAGTGGAAGTCAATTCGTCAACTTTGCACTTGGCCAACTACCCCATCACAACAAAACAGAAAATCTTTTGCCACGAATCAGAATAAGTCCAGAAAAATGAGTTTGGTTATAAACTCCAAAGCATAGACCATGAAACAAACATGTCAATGATCTCCGTTTGGTTTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25724</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>44857</contig_pos>
        <strand>+</strand>
        <context>TTTGCACTTG[A/G]CCAACTACCC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAAGTGAAATTTAGTTCAAGTGGAAGTCAATTCGTCAACTTTGCACTTG</left_flank>
        <right_flank>CCAACTACCCCATCACAACAAAACAGAAAATCTTTTGCCACGAATCAGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGGTTTCCGGTTGCACACAGAGCAAGATTTTTTGGTGAAGAGGAATTTTTCGAAAATCATTAAGACACTTTTACAGTGATCAGAAAATACATAGTCGTGAGGGGCTGGAAAAAACGTGTCAAATTATAGCTTTTCAGAGGGTTATCAACAATTCAATTATCAGTCTGTAAGTTCTGCGTCAATAAGCAGAGTGACCTCAATATGGTCCATCTAGGGTGGGAGGAGACGAAGCTAAAAGCTCGGTCACTTTATGGCTTGTAACTTAGCTCACAGACGAGTTATAGTTTTTCAATTAATATCATTTTGTAGTACTCGTGGAGTTCTACCCTATGAAATTTAGTAGGTCTAAAAATATTGATTCTAAAAGAAACTATGGCAGGATTTGCGAAGGTCCGGTAAAGGCCCTCCTTTAATCCCCAATTTTCTGATTCGTGCCTTCTTTCTTAATTAAGTGAAATTTAGTTCAAGTGGAAGTCAATTCGTCAACTTTGCACTTGGCCAACTACCCCATCACAACAAAACAGAAAATCTTTTGCCACGAATCAGAATAAGTCCAGAAAAATGAGTTTGGTTATAAACTCCAAAGCATAGACCATGAAACAAACATGTCAATGATCTCCGTTTGGTTTTAGTCGGGAGAGAGAGAGAGAGAGAGAAAATAGCAGAGAGGGTAAGTGATAGCTTAACTGTCAGCTGATGAAGACAAGGTAGTACTAAAGCGCTTAGCTAGAAATTCGGAGCTGTGGTCAAAGTCGTCGGAGGCAGAAATGTTTGCTTCTAGAAAAGGTTCGAGTAGAAGGGTAAAAGAACTATCAGGCTACAATGGTGAGGTGATTTTTAGGGTGGCTATAATACCATTAATCAGTCTGACCACCATTTGTACCTATGGAGAAGACAAAGTCGAATGCTACGATTATTTGGAAGCTAGCTTTTATATCCAGCTTCTAACTACCCTTATCTTGTTCCTATATGTTCACTTTGAGCTCAATTAACCAACA</canonical>
            <polymorphic>TGTGGTTTCCGGTTGCACACAGAGCAAGATTTTTTGGTGAAGAGGAATTTTTCGAAAATCATTAAGACACTTTTACAGTGATCAGAAAATACATAGTCGTGAGGGGCTGGAAAAAACGTGTCAAATTATAGCTTTTCAGAGGGTTATCAACAATTCAATTATCAGTCTGTAAGTTCTGCGTCAATAAGCAGAGTGACCTCAATATGGTCCATCTAGGGTGGGAGGAGACGAAGCTAAAAGCTCGGTCACTTTATGGCTTGTAACTTAGCTCACAGACGAGTTATAGTTTTTCAATTAATATCATTTTGTAGTACTCGTGGAGTTCTACCCTATGAAATTTAGTAGGTCTAAAAATATTGATTCTAAAAGAAACTATGGCAGGATTTGCGAAGGTCCGGTAAAGGCCCTCCTTTAATCCCCAATTTTCTGATTCGTGCCTTCTTTCTTAATTAAGTGAAATTTAGTTCAAGTGGAAGTCAATTCGTCAACTTTGCACTTGRCCAACTACCCCATCACAACAAAACAGAAAATCTTTTGCCACGAATCAGAATAAGTCCAGAAAAATGAGTTTGGTTATAAACTCCAAAGCATAGACCATGAAACAAACATGTCAATGATCTCCGTTTGGTTTTAGTCGGGAGAGAGAGAGAGAGAGAGAAAATAGCAGAGAGGGTAAGTGATAGCTTAACTGTCAGCTGATGAAGACAAGGTAGTACTAAAGCGCTTAGCTAGAAATTCGGAGCTGTGGTCAAAGTCGTCGGAGGCAGAAATGTTTGCTTCTAGAAAAGGTTCGAGTAGAAGGGTAAAAGAACTATCAGGCTACAATGGTGAGGTGATTTTTAGGGTGGCTATAATACCATTAATCAGTCTGACCACCATTTGTACCTATGGAGAAGACAAAGTCGAATGCTACGATTATTTGGAAGCTAGCTTTTATATCCAGCTTCTAACTACCCTTATCTTGTTCCTATATGTTCACTTTGAGCTCAATTAACCAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGGCCA</site>
                <isoschizomers>
                    <enzyme>BalI</enzyme>
                    <enzyme>MlsI</enzyme>
                    <enzyme>MluNI</enzyme>
                    <enzyme>MscI</enzyme>
                    <enzyme>Msp20I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 404 96</canonical_bands>
                <polymorphic_bands>596 404</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>183 136 106 102 96 78 77 42 33 29 25 16 15 14 13 12 12 7 4</canonical_bands>
                <polymorphic_bands>279 136 106 102 78 77 42 33 29 25 16 15 14 13 12 12 7 4</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCGTGCCTTCTTTCTTAAT</pcr_primer_p1>
		<pcr_primer_p2>ATCACTTACCCTCTCTGCTATTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTCGTGCCTTCTTTCTTAATTAAGTGAAATTTAGTTCAAGTGGAAGTCAATTCGTCAACTTTGCACTTGGCCAACTACCCCATCACAACAAAACAGAAAATCTTTTGCCACGAATCAGAATAAGTCCAGAAAAATGAGTTTGGTTATAAACTCCAAAGCATAGACCATGAAACAAACATGTCAATGATCTCCGTTTGGTTTTAGTCGGGAGAGAGAGAGAGAGAGAGAAAATAGCAGAGAGGGTAAGTGAT</canonical_amplicon>
		<polymorphic_amplicon>ATTCGTGCCTTCTTTCTTAATTAAGTGAAATTTAGTTCAAGTGGAAGTCAATTCGTCAACTTTGCACTTGRCCAACTACCCCATCACAACAAAACAGAAAATCTTTTGCCACGAATCAGAATAAGTCCAGAAAAATGAGTTTGGTTATAAACTCCAAAGCATAGACCATGAAACAAACATGTCAATGATCTCCGTTTGGTTTTAGTCGGGAGAGAGAGAGAGAGAGAGAAAATAGCAGAGAGGGTAAGTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25725</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>45003</contig_pos>
        <strand></strand>
        <context>CGGgagagag[A/T]gagagagaga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATGAAACAAACATGTCAATGATCTCCGTTTGGTTTTAGTCGGGAGAGAG</left_flank>
        <right_flank>GAGAGAGAGAGAAAATAGCAGAGAGGGTAAGTGATAGCTTAACTGTCAGC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAACAATTCAATTATCAGTCTGTAAGTTCTGCGTCAATAAGCAGAGTGACCTCAATATGGTCCATCTAGGGTGGGAGGAGACGAAGCTAAAAGCTCGGTCACTTTATGGCTTGTAACTTAGCTCACAGACGAGTTATAGTTTTTCAATTAATATCATTTTGTAGTACTCGTGGAGTTCTACCCTATGAAATTTAGTAGGTCTAAAAATATTGATTCTAAAAGAAACTATGGCAGGATTTGCGAAGGTCCGGTAAAGGCCCTCCTTTAATCCCCAATTTTCTGATTCGTGCCTTCTTTCTTAATTAAGTGAAATTTAGTTCAAGTGGAAGTCAATTCGTCAACTTTGCACTTGGCCAACTACCCCATCACAACAAAACAGAAAATCTTTTGCCACGAATCAGAATAAGTCCAGAAAAATGAGTTTGGTTATAAACTCCAAAGCATAGACCATGAAACAAACATGTCAATGATCTCCGTTTGGTTTTAGTCGGGAGAGAGAGAGAGAGAGAGAAAATAGCAGAGAGGGTAAGTGATAGCTTAACTGTCAGCTGATGAAGACAAGGTAGTACTAAAGCGCTTAGCTAGAAATTCGGAGCTGTGGTCAAAGTCGTCGGAGGCAGAAATGTTTGCTTCTAGAAAAGGTTCGAGTAGAAGGGTAAAAGAACTATCAGGCTACAATGGTGAGGTGATTTTTAGGGTGGCTATAATACCATTAATCAGTCTGACCACCATTTGTACCTATGGAGAAGACAAAGTCGAATGCTACGATTATTTGGAAGCTAGCTTTTATATCCAGCTTCTAACTACCCTTATCTTGTTCCTATATGTTCACTTTGAGCTCAATTAACCAACAGAAGCTCACCCAGATTATAAATTTTGAGCTCAATTTTCTCGGCTCCTATGAGAGATATTAAAATTTTGTCAACTAATAAAACATCCGTGATAAAATGATGAATAATTTATCAGTTGACAGATTATTGATATCTTCTGAAGGAACCG</canonical>
            <polymorphic>TCAACAATTCAATTATCAGTCTGTAAGTTCTGCGTCAATAAGCAGAGTGACCTCAATATGGTCCATCTAGGGTGGGAGGAGACGAAGCTAAAAGCTCGGTCACTTTATGGCTTGTAACTTAGCTCACAGACGAGTTATAGTTTTTCAATTAATATCATTTTGTAGTACTCGTGGAGTTCTACCCTATGAAATTTAGTAGGTCTAAAAATATTGATTCTAAAAGAAACTATGGCAGGATTTGCGAAGGTCCGGTAAAGGCCCTCCTTTAATCCCCAATTTTCTGATTCGTGCCTTCTTTCTTAATTAAGTGAAATTTAGTTCAAGTGGAAGTCAATTCGTCAACTTTGCACTTGGCCAACTACCCCATCACAACAAAACAGAAAATCTTTTGCCACGAATCAGAATAAGTCCAGAAAAATGAGTTTGGTTATAAACTCCAAAGCATAGACCATGAAACAAACATGTCAATGATCTCCGTTTGGTTTTAGTCGGGAGAGAGWGAGAGAGAGAGAAAATAGCAGAGAGGGTAAGTGATAGCTTAACTGTCAGCTGATGAAGACAAGGTAGTACTAAAGCGCTTAGCTAGAAATTCGGAGCTGTGGTCAAAGTCGTCGGAGGCAGAAATGTTTGCTTCTAGAAAAGGTTCGAGTAGAAGGGTAAAAGAACTATCAGGCTACAATGGTGAGGTGATTTTTAGGGTGGCTATAATACCATTAATCAGTCTGACCACCATTTGTACCTATGGAGAAGACAAAGTCGAATGCTACGATTATTTGGAAGCTAGCTTTTATATCCAGCTTCTAACTACCCTTATCTTGTTCCTATATGTTCACTTTGAGCTCAATTAACCAACAGAAGCTCACCCAGATTATAAATTTTGAGCTCAATTTTCTCGGCTCCTATGAGAGATATTAAAATTTTGTCAACTAATAAAACATCCGTGATAAAATGATGAATAATTTATCAGTTGACAGATTATTGATATCTTCTGAAGGAACCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTTATAAACTCCAAAGCATAG</pcr_primer_p1>
		<pcr_primer_p2>CCTGATAGTTCTTTTACCCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGGTTATAAACTCCAAAGCATAGACCATGAAACAAACATGTCAATGATCTCCGTTTGGTTTTAGTCGGGAGAGAGAGAGAGAGAGAGAAAATAGCAGAGAGGGTAAGTGATAGCTTAACTGTCAGCTGATGAAGACAAGGTAGTACTAAAGCGCTTAGCTAGAAATTCGGAGCTGTGGTCAAAGTCGTCGGAGGCAGAAATGTTTGCTTCTAGAAAAGGTTCGAGTAGAAGGGTAAAAGAACTATCAGG</canonical_amplicon>
		<polymorphic_amplicon>TGGTTATAAACTCCAAAGCATAGACCATGAAACAAACATGTCAATGATCTCCGTTTGGTTTTAGTCGGGAGAGAGWGAGAGAGAGAGAAAATAGCAGAGAGGGTAAGTGATAGCTTAACTGTCAGCTGATGAAGACAAGGTAGTACTAAAGCGCTTAGCTAGAAATTCGGAGCTGTGGTCAAAGTCGTCGGAGGCAGAAATGTTTGCTTCTAGAAAAGGTTCGAGTAGAAGGGTAAAAGAACTATCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25726</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>45134</contig_pos>
        <strand>+</strand>
        <context>GAAATGTTTG[C/T]TTCTAGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCTAGAAATTCGGAGCTGTGGTCAAAGTCGTCGGAGGCAGAAATGTTTG</left_flank>
        <right_flank>TTCTAGAAAAGGTTCGAGTAGAAGGGTAAAAGAACTATCAGGCTACAATG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTTATAGTTTTTCAATTAATATCATTTTGTAGTACTCGTGGAGTTCTACCCTATGAAATTTAGTAGGTCTAAAAATATTGATTCTAAAAGAAACTATGGCAGGATTTGCGAAGGTCCGGTAAAGGCCCTCCTTTAATCCCCAATTTTCTGATTCGTGCCTTCTTTCTTAATTAAGTGAAATTTAGTTCAAGTGGAAGTCAATTCGTCAACTTTGCACTTGGCCAACTACCCCATCACAACAAAACAGAAAATCTTTTGCCACGAATCAGAATAAGTCCAGAAAAATGAGTTTGGTTATAAACTCCAAAGCATAGACCATGAAACAAACATGTCAATGATCTCCGTTTGGTTTTAGTCGGGAGAGAGAGAGAGAGAGAGAAAATAGCAGAGAGGGTAAGTGATAGCTTAACTGTCAGCTGATGAAGACAAGGTAGTACTAAAGCGCTTAGCTAGAAATTCGGAGCTGTGGTCAAAGTCGTCGGAGGCAGAAATGTTTGCTTCTAGAAAAGGTTCGAGTAGAAGGGTAAAAGAACTATCAGGCTACAATGGTGAGGTGATTTTTAGGGTGGCTATAATACCATTAATCAGTCTGACCACCATTTGTACCTATGGAGAAGACAAAGTCGAATGCTACGATTATTTGGAAGCTAGCTTTTATATCCAGCTTCTAACTACCCTTATCTTGTTCCTATATGTTCACTTTGAGCTCAATTAACCAACAGAAGCTCACCCAGATTATAAATTTTGAGCTCAATTTTCTCGGCTCCTATGAGAGATATTAAAATTTTGTCAACTAATAAAACATCCGTGATAAAATGATGAATAATTTATCAGTTGACAGATTATTGATATCTTCTGAAGGAACCGAGATAATTGAGCAATACTGTAATACTCATAATAGTCATCACAACTAGTCTTATCCCCTAGGATTACAACCATTTCCTCCTACCTTTCGTCAGATGTGTCGAATTTGTGTCCAATTGTGACCGAATGTGGTC</canonical>
            <polymorphic>GAGTTATAGTTTTTCAATTAATATCATTTTGTAGTACTCGTGGAGTTCTACCCTATGAAATTTAGTAGGTCTAAAAATATTGATTCTAAAAGAAACTATGGCAGGATTTGCGAAGGTCCGGTAAAGGCCCTCCTTTAATCCCCAATTTTCTGATTCGTGCCTTCTTTCTTAATTAAGTGAAATTTAGTTCAAGTGGAAGTCAATTCGTCAACTTTGCACTTGGCCAACTACCCCATCACAACAAAACAGAAAATCTTTTGCCACGAATCAGAATAAGTCCAGAAAAATGAGTTTGGTTATAAACTCCAAAGCATAGACCATGAAACAAACATGTCAATGATCTCCGTTTGGTTTTAGTCGGGAGAGAGAGAGAGAGAGAGAAAATAGCAGAGAGGGTAAGTGATAGCTTAACTGTCAGCTGATGAAGACAAGGTAGTACTAAAGCGCTTAGCTAGAAATTCGGAGCTGTGGTCAAAGTCGTCGGAGGCAGAAATGTTTGYTTCTAGAAAAGGTTCGAGTAGAAGGGTAAAAGAACTATCAGGCTACAATGGTGAGGTGATTTTTAGGGTGGCTATAATACCATTAATCAGTCTGACCACCATTTGTACCTATGGAGAAGACAAAGTCGAATGCTACGATTATTTGGAAGCTAGCTTTTATATCCAGCTTCTAACTACCCTTATCTTGTTCCTATATGTTCACTTTGAGCTCAATTAACCAACAGAAGCTCACCCAGATTATAAATTTTGAGCTCAATTTTCTCGGCTCCTATGAGAGATATTAAAATTTTGTCAACTAATAAAACATCCGTGATAAAATGATGAATAATTTATCAGTTGACAGATTATTGATATCTTCTGAAGGAACCGAGATAATTGAGCAATACTGTAATACTCATAATAGTCATCACAACTAGTCTTATCCCCTAGGATTACAACCATTTCCTCCTACCTTTCGTCAGATGTGTCGAATTTGTGTCCAATTGTGACCGAATGTGGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATAGCAGAGAGGGTAAGTGAT</pcr_primer_p1>
		<pcr_primer_p2>ATTCGACTTTGTCTTCTCCATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATAGCAGAGAGGGTAAGTGATAGCTTAACTGTCAGCTGATGAAGACAAGGTAGTACTAAAGCGCTTAGCTAGAAATTCGGAGCTGTGGTCAAAGTCGTCGGAGGCAGAAATGTTTGCTTCTAGAAAAGGTTCGAGTAGAAGGGTAAAAGAACTATCAGGCTACAATGGTGAGGTGATTTTTAGGGTGGCTATAATACCATTAATCAGTCTGACCACCATTTGTACCTATGGAGAAGACAAAGTCGAAT</canonical_amplicon>
		<polymorphic_amplicon>AAATAGCAGAGAGGGTAAGTGATAGCTTAACTGTCAGCTGATGAAGACAAGGTAGTACTAAAGCGCTTAGCTAGAAATTCGGAGCTGTGGTCAAAGTCGTCGGAGGCAGAAATGTTTGYTTCTAGAAAAGGTTCGAGTAGAAGGGTAAAAGAACTATCAGGCTACAATGGTGAGGTGATTTTTAGGGTGGCTATAATACCATTAATCAGTCTGACCACCATTTGTACCTATGGAGAAGACAAAGTCGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25727</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>45152</contig_pos>
        <strand>+</strand>
        <context>AAAGGTTCGA[A/G]TAGAAGGGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGGTCAAAGTCGTCGGAGGCAGAAATGTTTGCTTCTAGAAAAGGTTCGA</left_flank>
        <right_flank>TAGAAGGGTAAAAGAACTATCAGGCTACAATGGTGAGGTGATTTTTAGGG</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATATCATTTTGTAGTACTCGTGGAGTTCTACCCTATGAAATTTAGTAGGTCTAAAAATATTGATTCTAAAAGAAACTATGGCAGGATTTGCGAAGGTCCGGTAAAGGCCCTCCTTTAATCCCCAATTTTCTGATTCGTGCCTTCTTTCTTAATTAAGTGAAATTTAGTTCAAGTGGAAGTCAATTCGTCAACTTTGCACTTGGCCAACTACCCCATCACAACAAAACAGAAAATCTTTTGCCACGAATCAGAATAAGTCCAGAAAAATGAGTTTGGTTATAAACTCCAAAGCATAGACCATGAAACAAACATGTCAATGATCTCCGTTTGGTTTTAGTCGGGAGAGAGAGAGAGAGAGAGAAAATAGCAGAGAGGGTAAGTGATAGCTTAACTGTCAGCTGATGAAGACAAGGTAGTACTAAAGCGCTTAGCTAGAAATTCGGAGCTGTGGTCAAAGTCGTCGGAGGCAGAAATGTTTGCTTCTAGAAAAGGTTCGAGTAGAAGGGTAAAAGAACTATCAGGCTACAATGGTGAGGTGATTTTTAGGGTGGCTATAATACCATTAATCAGTCTGACCACCATTTGTACCTATGGAGAAGACAAAGTCGAATGCTACGATTATTTGGAAGCTAGCTTTTATATCCAGCTTCTAACTACCCTTATCTTGTTCCTATATGTTCACTTTGAGCTCAATTAACCAACAGAAGCTCACCCAGATTATAAATTTTGAGCTCAATTTTCTCGGCTCCTATGAGAGATATTAAAATTTTGTCAACTAATAAAACATCCGTGATAAAATGATGAATAATTTATCAGTTGACAGATTATTGATATCTTCTGAAGGAACCGAGATAATTGAGCAATACTGTAATACTCATAATAGTCATCACAACTAGTCTTATCCCCTAGGATTACAACCATTTCCTCCTACCTTTCGTCAGATGTGTCGAATTTGTGTCCAATTGTGACCGAATGTGGTCGGAAACGAGTTCAAAAAG</canonical>
            <polymorphic>TAATATCATTTTGTAGTACTCGTGGAGTTCTACCCTATGAAATTTAGTAGGTCTAAAAATATTGATTCTAAAAGAAACTATGGCAGGATTTGCGAAGGTCCGGTAAAGGCCCTCCTTTAATCCCCAATTTTCTGATTCGTGCCTTCTTTCTTAATTAAGTGAAATTTAGTTCAAGTGGAAGTCAATTCGTCAACTTTGCACTTGGCCAACTACCCCATCACAACAAAACAGAAAATCTTTTGCCACGAATCAGAATAAGTCCAGAAAAATGAGTTTGGTTATAAACTCCAAAGCATAGACCATGAAACAAACATGTCAATGATCTCCGTTTGGTTTTAGTCGGGAGAGAGAGAGAGAGAGAGAAAATAGCAGAGAGGGTAAGTGATAGCTTAACTGTCAGCTGATGAAGACAAGGTAGTACTAAAGCGCTTAGCTAGAAATTCGGAGCTGTGGTCAAAGTCGTCGGAGGCAGAAATGTTTGCTTCTAGAAAAGGTTCGARTAGAAGGGTAAAAGAACTATCAGGCTACAATGGTGAGGTGATTTTTAGGGTGGCTATAATACCATTAATCAGTCTGACCACCATTTGTACCTATGGAGAAGACAAAGTCGAATGCTACGATTATTTGGAAGCTAGCTTTTATATCCAGCTTCTAACTACCCTTATCTTGTTCCTATATGTTCACTTTGAGCTCAATTAACCAACAGAAGCTCACCCAGATTATAAATTTTGAGCTCAATTTTCTCGGCTCCTATGAGAGATATTAAAATTTTGTCAACTAATAAAACATCCGTGATAAAATGATGAATAATTTATCAGTTGACAGATTATTGATATCTTCTGAAGGAACCGAGATAATTGAGCAATACTGTAATACTCATAATAGTCATCACAACTAGTCTTATCCCCTAGGATTACAACCATTTCCTCCTACCTTTCGTCAGATGTGTCGAATTTGTGTCCAATTGTGACCGAATGTGGTCGGAAACGAGTTCAAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATAGCAGAGAGGGTAAGTGAT</pcr_primer_p1>
		<pcr_primer_p2>ATTCGACTTTGTCTTCTCCATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATAGCAGAGAGGGTAAGTGATAGCTTAACTGTCAGCTGATGAAGACAAGGTAGTACTAAAGCGCTTAGCTAGAAATTCGGAGCTGTGGTCAAAGTCGTCGGAGGCAGAAATGTTTGCTTCTAGAAAAGGTTCGAGTAGAAGGGTAAAAGAACTATCAGGCTACAATGGTGAGGTGATTTTTAGGGTGGCTATAATACCATTAATCAGTCTGACCACCATTTGTACCTATGGAGAAGACAAAGTCGAAT</canonical_amplicon>
		<polymorphic_amplicon>AAATAGCAGAGAGGGTAAGTGATAGCTTAACTGTCAGCTGATGAAGACAAGGTAGTACTAAAGCGCTTAGCTAGAAATTCGGAGCTGTGGTCAAAGTCGTCGGAGGCAGAAATGTTTGCTTCTAGAAAAGGTTCGARTAGAAGGGTAAAAGAACTATCAGGCTACAATGGTGAGGTGATTTTTAGGGTGGCTATAATACCATTAATCAGTCTGACCACCATTTGTACCTATGGAGAAGACAAAGTCGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25728</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>45303</contig_pos>
        <strand>+</strand>
        <context>ATATCCAGCT[C/T]CTAACTACCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACAAAGTCGAATGCTACGATTATTTGGAAGCTAGCTTTTATATCCAGCT</left_flank>
        <right_flank>CTAACTACCCTTATCTTGTTCCTATATGTTCACTTTGAGCTCAATTAACC</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTAAGTGAAATTTAGTTCAAGTGGAAGTCAATTCGTCAACTTTGCACTTGGCCAACTACCCCATCACAACAAAACAGAAAATCTTTTGCCACGAATCAGAATAAGTCCAGAAAAATGAGTTTGGTTATAAACTCCAAAGCATAGACCATGAAACAAACATGTCAATGATCTCCGTTTGGTTTTAGTCGGGAGAGAGAGAGAGAGAGAGAAAATAGCAGAGAGGGTAAGTGATAGCTTAACTGTCAGCTGATGAAGACAAGGTAGTACTAAAGCGCTTAGCTAGAAATTCGGAGCTGTGGTCAAAGTCGTCGGAGGCAGAAATGTTTGCTTCTAGAAAAGGTTCGAGTAGAAGGGTAAAAGAACTATCAGGCTACAATGGTGAGGTGATTTTTAGGGTGGCTATAATACCATTAATCAGTCTGACCACCATTTGTACCTATGGAGAAGACAAAGTCGAATGCTACGATTATTTGGAAGCTAGCTTTTATATCCAGCTTCTAACTACCCTTATCTTGTTCCTATATGTTCACTTTGAGCTCAATTAACCAACAGAAGCTCACCCAGATTATAAATTTTGAGCTCAATTTTCTCGGCTCCTATGAGAGATATTAAAATTTTGTCAACTAATAAAACATCCGTGATAAAATGATGAATAATTTATCAGTTGACAGATTATTGATATCTTCTGAAGGAACCGAGATAATTGAGCAATACTGTAATACTCATAATAGTCATCACAACTAGTCTTATCCCCTAGGATTACAACCATTTCCTCCTACCTTTCGTCAGATGTGTCGAATTTGTGTCCAATTGTGACCGAATGTGGTCGGAAACGAGTTCAAAAAGTTTCGCCTAATCCTAATTTCAAGTCTCCGTTGGGGGTTTAGTCATTCTTTATATAGTACAAGAGGTGCGGAAGAAAGGGAAGACGATAAAATTTTGTTTGTACGAGCCTCTCGTTAAAAATGGCAACAATATAAACATAAAGTCGGCATGG</canonical>
            <polymorphic>TAATTAAGTGAAATTTAGTTCAAGTGGAAGTCAATTCGTCAACTTTGCACTTGGCCAACTACCCCATCACAACAAAACAGAAAATCTTTTGCCACGAATCAGAATAAGTCCAGAAAAATGAGTTTGGTTATAAACTCCAAAGCATAGACCATGAAACAAACATGTCAATGATCTCCGTTTGGTTTTAGTCGGGAGAGAGAGAGAGAGAGAGAAAATAGCAGAGAGGGTAAGTGATAGCTTAACTGTCAGCTGATGAAGACAAGGTAGTACTAAAGCGCTTAGCTAGAAATTCGGAGCTGTGGTCAAAGTCGTCGGAGGCAGAAATGTTTGCTTCTAGAAAAGGTTCGAGTAGAAGGGTAAAAGAACTATCAGGCTACAATGGTGAGGTGATTTTTAGGGTGGCTATAATACCATTAATCAGTCTGACCACCATTTGTACCTATGGAGAAGACAAAGTCGAATGCTACGATTATTTGGAAGCTAGCTTTTATATCCAGCTYCTAACTACCCTTATCTTGTTCCTATATGTTCACTTTGAGCTCAATTAACCAACAGAAGCTCACCCAGATTATAAATTTTGAGCTCAATTTTCTCGGCTCCTATGAGAGATATTAAAATTTTGTCAACTAATAAAACATCCGTGATAAAATGATGAATAATTTATCAGTTGACAGATTATTGATATCTTCTGAAGGAACCGAGATAATTGAGCAATACTGTAATACTCATAATAGTCATCACAACTAGTCTTATCCCCTAGGATTACAACCATTTCCTCCTACCTTTCGTCAGATGTGTCGAATTTGTGTCCAATTGTGACCGAATGTGGTCGGAAACGAGTTCAAAAAGTTTCGCCTAATCCTAATTTCAAGTCTCCGTTGGGGGTTTAGTCATTCTTTATATAGTACAAGAGGTGCGGAAGAAAGGGAAGACGATAAAATTTTGTTTGTACGAGCCTCTCGTTAAAAATGGCAACAATATAAACATAAAGTCGGCATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAAGTCGAATGCTACGAT</pcr_primer_p1>
		<pcr_primer_p2>GGGATAAGACTAGTTGTGATGACT</pcr_primer_p2>
		<pcr_amplicon_size>306</pcr_amplicon_size>
		<canonical_amplicon>ACAAAGTCGAATGCTACGATTATTTGGAAGCTAGCTTTTATATCCAGCTTCTAACTACCCTTATCTTGTTCCTATATGTTCACTTTGAGCTCAATTAACCAACAGAAGCTCACCCAGATTATAAATTTTGAGCTCAATTTTCTCGGCTCCTATGAGAGATATTAAAATTTTGTCAACTAATAAAACATCCGTGATAAAATGATGAATAATTTATCAGTTGACAGATTATTGATATCTTCTGAAGGAACCGAGATAATTGAGCAATACTGTAATACTCATAATAGTCATCACAACTAGTCTTATCCC</canonical_amplicon>
		<polymorphic_amplicon>ACAAAGTCGAATGCTACGATTATTTGGAAGCTAGCTTTTATATCCAGCTYCTAACTACCCTTATCTTGTTCCTATATGTTCACTTTGAGCTCAATTAACCAACAGAAGCTCACCCAGATTATAAATTTTGAGCTCAATTTTCTCGGCTCCTATGAGAGATATTAAAATTTTGTCAACTAATAAAACATCCGTGATAAAATGATGAATAATTTATCAGTTGACAGATTATTGATATCTTCTGAAGGAACCGAGATAATTGAGCAATACTGTAATACTCATAATAGTCATCACAACTAGTCTTATCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25729</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>47285</contig_pos>
        <strand>+</strand>
        <context>ATGATTCAGG[A/T]GACGGAAAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGGTGGTGGAGGAAAAATATATGCAAAGTTTCTAGATTATGATTCAGG</left_flank>
        <right_flank>GACGGAAAGTTTCTAGACGAGTCTAGGGGCAGAACGGGAGCATACCGTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTGCTTCGAATCATAATAGGCGTGGTACCTACCGCCAAGGCGAAAAAAAACGATAAAGTTTGGAATTTCGTCTCCATGTGTGCAAACATACATTCCTCCCATTTCTCTCTCACTCTCTCTCCATGTGCTAGCAGAGGTGTGAAAGTACGTCATCAACCCGGACTGTCATGGAAAAACACTACGAAACCATTCATGACCACCCACTCGCTGTCCGGAAAAGAAAAGCAACGAAAAAAATGGGTTGACACACTTTTTGTTGACATCATAAAAAAAGGAACTCCGGAAGACATCTCCATGATGTGTATTTTTGTGGTTTATGCGTAGGTGCAAAGAGGTTGACTCAGAAATGACCTGGATGATGACCTATTGTTGCAAGACGGGAGTATGATGAAATTTTGGTTAACCATATGGTTTCGGATTAAGTCTCTTGCAAATGATGGCGCCTGTTTGGTGGTGGAGGAAAAATATATGCAAAGTTTCTAGATTATGATTCAGGTGACGGAAAGTTTCTAGACGAGTCTAGGGGCAGAACGGGAGCATACCGTAAAACCTGTATTAAAAGGGCCCTTCAGATTGAAAGACCCCTAGAGAACCCACGAAAAAATAGAATTACCGACCTTTCTAGTACATATCATTATCATTACTAATAACATTCACCAAATTCTGTATGTGCGTATGTATGTAGCGTGCCTTTTCCCCCATTCAAAATTAACCGATTGAGCTGAAACATGGTCAGATAGATCAGAATTGTGTCTTAGTTGATGCCCGAACTTTTGGTTTTGGAGTCTTCTGGAGACGTTTCTTGGTTTCACCGCACTAAAGAATGGTGAGCAGAAAGGGCGATGGTGGAGGGCGACCGGAGGCCAAGAGGTTCAGCCCCGAAGGAGCCGTAAACCGACTGTTAATACTGTATTCAACAACTGTTTATTACTGGGATTAAAGTTCTGATTTAGGATCTTCTGGGCGTTCGCAGTTGGGTTTGGCGTAGTTCCGATAG</canonical>
            <polymorphic>GTTTTGCTTCGAATCATAATAGGCGTGGTACCTACCGCCAAGGCGAAAAAAAACGATAAAGTTTGGAATTTCGTCTCCATGTGTGCAAACATACATTCCTCCCATTTCTCTCTCACTCTCTCTCCATGTGCTAGCAGAGGTGTGAAAGTACGTCATCAACCCGGACTGTCATGGAAAAACACTACGAAACCATTCATGACCACCCACTCGCTGTCCGGAAAAGAAAAGCAACGAAAAAAATGGGTTGACACACTTTTTGTTGACATCATAAAAAAAGGAACTCCGGAAGACATCTCCATGATGTGTATTTTTGTGGTTTATGCGTAGGTGCAAAGAGGTTGACTCAGAAATGACCTGGATGATGACCTATTGTTGCAAGACGGGAGTATGATGAAATTTTGGTTAACCATATGGTTTCGGATTAAGTCTCTTGCAAATGATGGCGCCTGTTTGGTGGTGGAGGAAAAATATATGCAAAGTTTCTAGATTATGATTCAGGWGACGGAAAGTTTCTAGACGAGTCTAGGGGCAGAACGGGAGCATACCGTAAAACCTGTATTAAAAGGGCCCTTCAGATTGAAAGACCCCTAGAGAACCCACGAAAAAATAGAATTACCGACCTTTCTAGTACATATCATTATCATTACTAATAACATTCACCAAATTCTGTATGTGCGTATGTATGTAGCGTGCCTTTTCCCCCATTCAAAATTAACCGATTGAGCTGAAACATGGTCAGATAGATCAGAATTGTGTCTTAGTTGATGCCCGAACTTTTGGTTTTGGAGTCTTCTGGAGACGTTTCTTGGTTTCACCGCACTAAAGAATGGTGAGCAGAAAGGGCGATGGTGGAGGGCGACCGGAGGCCAAGAGGTTCAGCCCCGAAGGAGCCGTAAACCGACTGTTAATACTGTATTCAACAACTGTTTATTACTGGGATTAAAGTTCTGATTTAGGATCTTCTGGGCGTTCGCAGTTGGGTTTGGCGTAGTTCCGATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>149 126 98 63 60 59 56 53 44 42 37 30 27 21 19 17 16 15 15 13 12 10 5 4 3 2 2 2</canonical_bands>
                <polymorphic_bands>149 140 126 63 60 59 56 53 44 37 30 27 21 19 17 16 15 15 13 12 10 5 4 3 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAGTATGATGAAATTTTGGTTA</pcr_primer_p1>
		<pcr_primer_p2>TGTACTAGAAAGGTCGGTAATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAGTATGATGAAATTTTGGTTAACCATATGGTTTCGGATTAAGTCTCTTGCAAATGATGGCGCCTGTTTGGTGGTGGAGGAAAAATATATGCAAAGTTTCTAGATTATGATTCAGGTGACGGAAAGTTTCTAGACGAGTCTAGGGGCAGAACGGGAGCATACCGTAAAACCTGTATTAAAAGGGCCCTTCAGATTGAAAGACCCCTAGAGAACCCACGAAAAAATAGAATTACCGACCTTTCTAGTACA</canonical_amplicon>
		<polymorphic_amplicon>GGAGTATGATGAAATTTTGGTTAACCATATGGTTTCGGATTAAGTCTCTTGCAAATGATGGCGCCTGTTTGGTGGTGGAGGAAAAATATATGCAAAGTTTCTAGATTATGATTCAGGWGACGGAAAGTTTCTAGACGAGTCTAGGGGCAGAACGGGAGCATACCGTAAAACCTGTATTAAAAGGGCCCTTCAGATTGAAAGACCCCTAGAGAACCCACGAAAAAATAGAATTACCGACCTTTCTAGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25730</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>47342</contig_pos>
        <strand>+</strand>
        <context>GTAAAACCTG[G/T]AWTAAAAGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGTTTCTAGACGAGTCTAGGGGCAGAACGGGAGCATACCGTAAAACCTG</left_flank>
        <right_flank>ATTAAAAGGGCCCTTCAGATTGAAAGACCCCTAGAGAACCCACGAAAAAA</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTTTGGAATTTCGTCTCCATGTGTGCAAACATACATTCCTCCCATTTCTCTCTCACTCTCTCTCCATGTGCTAGCAGAGGTGTGAAAGTACGTCATCAACCCGGACTGTCATGGAAAAACACTACGAAACCATTCATGACCACCCACTCGCTGTCCGGAAAAGAAAAGCAACGAAAAAAATGGGTTGACACACTTTTTGTTGACATCATAAAAAAAGGAACTCCGGAAGACATCTCCATGATGTGTATTTTTGTGGTTTATGCGTAGGTGCAAAGAGGTTGACTCAGAAATGACCTGGATGATGACCTATTGTTGCAAGACGGGAGTATGATGAAATTTTGGTTAACCATATGGTTTCGGATTAAGTCTCTTGCAAATGATGGCGCCTGTTTGGTGGTGGAGGAAAAATATATGCAAAGTTTCTAGATTATGATTCAGGTGACGGAAAGTTTCTAGACGAGTCTAGGGGCAGAACGGGAGCATACCGTAAAACCTGTATTAAAAGGGCCCTTCAGATTGAAAGACCCCTAGAGAACCCACGAAAAAATAGAATTACCGACCTTTCTAGTACATATCATTATCATTACTAATAACATTCACCAAATTCTGTATGTGCGTATGTATGTAGCGTGCCTTTTCCCCCATTCAAAATTAACCGATTGAGCTGAAACATGGTCAGATAGATCAGAATTGTGTCTTAGTTGATGCCCGAACTTTTGGTTTTGGAGTCTTCTGGAGACGTTTCTTGGTTTCACCGCACTAAAGAATGGTGAGCAGAAAGGGCGATGGTGGAGGGCGACCGGAGGCCAAGAGGTTCAGCCCCGAAGGAGCCGTAAACCGACTGTTAATACTGTATTCAACAACTGTTTATTACTGGGATTAAAGTTCTGATTTAGGATCTTCTGGGCGTTCGCAGTTGGGTTTGGCGTAGTTCCGATAGCCTAAATCATCCTAAATCAGATTTAGGACCAGATGAGGTTCCATTTCTTGTGGAGAG</canonical>
            <polymorphic>AAAGTTTGGAATTTCGTCTCCATGTGTGCAAACATACATTCCTCCCATTTCTCTCTCACTCTCTCTCCATGTGCTAGCAGAGGTGTGAAAGTACGTCATCAACCCGGACTGTCATGGAAAAACACTACGAAACCATTCATGACCACCCACTCGCTGTCCGGAAAAGAAAAGCAACGAAAAAAATGGGTTGACACACTTTTTGTTGACATCATAAAAAAAGGAACTCCGGAAGACATCTCCATGATGTGTATTTTTGTGGTTTATGCGTAGGTGCAAAGAGGTTGACTCAGAAATGACCTGGATGATGACCTATTGTTGCAAGACGGGAGTATGATGAAATTTTGGTTAACCATATGGTTTCGGATTAAGTCTCTTGCAAATGATGGCGCCTGTTTGGTGGTGGAGGAAAAATATATGCAAAGTTTCTAGATTATGATTCAGGTGACGGAAAGTTTCTAGACGAGTCTAGGGGCAGAACGGGAGCATACCGTAAAACCTGKATTAAAAGGGCCCTTCAGATTGAAAGACCCCTAGAGAACCCACGAAAAAATAGAATTACCGACCTTTCTAGTACATATCATTATCATTACTAATAACATTCACCAAATTCTGTATGTGCGTATGTATGTAGCGTGCCTTTTCCCCCATTCAAAATTAACCGATTGAGCTGAAACATGGTCAGATAGATCAGAATTGTGTCTTAGTTGATGCCCGAACTTTTGGTTTTGGAGTCTTCTGGAGACGTTTCTTGGTTTCACCGCACTAAAGAATGGTGAGCAGAAAGGGCGATGGTGGAGGGCGACCGGAGGCCAAGAGGTTCAGCCCCGAAGGAGCCGTAAACCGACTGTTAATACTGTATTCAACAACTGTTTATTACTGGGATTAAAGTTCTGATTTAGGATCTTCTGGGCGTTCGCAGTTGGGTTTGGCGTAGTTCCGATAGCCTAAATCATCCTAAATCAGATTTAGGACCAGATGAGGTTCCATTTCTTGTGGAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGTATGATGAAATTTTGGTTA</pcr_primer_p1>
		<pcr_primer_p2>TGTACTAGAAAGGTCGGTAATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAGTATGATGAAATTTTGGTTAACCATATGGTTTCGGATTAAGTCTCTTGCAAATGATGGCGCCTGTTTGGTGGTGGAGGAAAAATATATGCAAAGTTTCTAGATTATGATTCAGGTGACGGAAAGTTTCTAGACGAGTCTAGGGGCAGAACGGGAGCATACCGTAAAACCTGTATTAAAAGGGCCCTTCAGATTGAAAGACCCCTAGAGAACCCACGAAAAAATAGAATTACCGACCTTTCTAGTACA</canonical_amplicon>
		<polymorphic_amplicon>GGAGTATGATGAAATTTTGGTTAACCATATGGTTTCGGATTAAGTCTCTTGCAAATGATGGCGCCTGTTTGGTGGTGGAGGAAAAATATATGCAAAGTTTCTAGATTATGATTCAGGTGACGGAAAGTTTCTAGACGAGTCTAGGGGCAGAACGGGAGCATACCGTAAAACCTGKATTAAAAGGGCCCTTCAGATTGAAAGACCCCTAGAGAACCCACGAAAAAATAGAATTACCGACCTTTCTAGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25731</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>47344</contig_pos>
        <strand>+</strand>
        <context>AAAACCTGKA[A/T]TAAAAGGGCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTTCTAGACGAGTCTAGGGGCAGAACGGGAGCATACCGTAAAACCTGTA</left_flank>
        <right_flank>TAAAAGGGCCCTTCAGATTGAAAGACCCCTAGAGAACCCACGAAAAAATA</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTTGGAATTTCGTCTCCATGTGTGCAAACATACATTCCTCCCATTTCTCTCTCACTCTCTCTCCATGTGCTAGCAGAGGTGTGAAAGTACGTCATCAACCCGGACTGTCATGGAAAAACACTACGAAACCATTCATGACCACCCACTCGCTGTCCGGAAAAGAAAAGCAACGAAAAAAATGGGTTGACACACTTTTTGTTGACATCATAAAAAAAGGAACTCCGGAAGACATCTCCATGATGTGTATTTTTGTGGTTTATGCGTAGGTGCAAAGAGGTTGACTCAGAAATGACCTGGATGATGACCTATTGTTGCAAGACGGGAGTATGATGAAATTTTGGTTAACCATATGGTTTCGGATTAAGTCTCTTGCAAATGATGGCGCCTGTTTGGTGGTGGAGGAAAAATATATGCAAAGTTTCTAGATTATGATTCAGGTGACGGAAAGTTTCTAGACGAGTCTAGGGGCAGAACGGGAGCATACCGTAAAACCTGTATTAAAAGGGCCCTTCAGATTGAAAGACCCCTAGAGAACCCACGAAAAAATAGAATTACCGACCTTTCTAGTACATATCATTATCATTACTAATAACATTCACCAAATTCTGTATGTGCGTATGTATGTAGCGTGCCTTTTCCCCCATTCAAAATTAACCGATTGAGCTGAAACATGGTCAGATAGATCAGAATTGTGTCTTAGTTGATGCCCGAACTTTTGGTTTTGGAGTCTTCTGGAGACGTTTCTTGGTTTCACCGCACTAAAGAATGGTGAGCAGAAAGGGCGATGGTGGAGGGCGACCGGAGGCCAAGAGGTTCAGCCCCGAAGGAGCCGTAAACCGACTGTTAATACTGTATTCAACAACTGTTTATTACTGGGATTAAAGTTCTGATTTAGGATCTTCTGGGCGTTCGCAGTTGGGTTTGGCGTAGTTCCGATAGCCTAAATCATCCTAAATCAGATTTAGGACCAGATGAGGTTCCATTTCTTGTGGAGAGAA</canonical>
            <polymorphic>AGTTTGGAATTTCGTCTCCATGTGTGCAAACATACATTCCTCCCATTTCTCTCTCACTCTCTCTCCATGTGCTAGCAGAGGTGTGAAAGTACGTCATCAACCCGGACTGTCATGGAAAAACACTACGAAACCATTCATGACCACCCACTCGCTGTCCGGAAAAGAAAAGCAACGAAAAAAATGGGTTGACACACTTTTTGTTGACATCATAAAAAAAGGAACTCCGGAAGACATCTCCATGATGTGTATTTTTGTGGTTTATGCGTAGGTGCAAAGAGGTTGACTCAGAAATGACCTGGATGATGACCTATTGTTGCAAGACGGGAGTATGATGAAATTTTGGTTAACCATATGGTTTCGGATTAAGTCTCTTGCAAATGATGGCGCCTGTTTGGTGGTGGAGGAAAAATATATGCAAAGTTTCTAGATTATGATTCAGGTGACGGAAAGTTTCTAGACGAGTCTAGGGGCAGAACGGGAGCATACCGTAAAACCTGTAWTAAAAGGGCCCTTCAGATTGAAAGACCCCTAGAGAACCCACGAAAAAATAGAATTACCGACCTTTCTAGTACATATCATTATCATTACTAATAACATTCACCAAATTCTGTATGTGCGTATGTATGTAGCGTGCCTTTTCCCCCATTCAAAATTAACCGATTGAGCTGAAACATGGTCAGATAGATCAGAATTGTGTCTTAGTTGATGCCCGAACTTTTGGTTTTGGAGTCTTCTGGAGACGTTTCTTGGTTTCACCGCACTAAAGAATGGTGAGCAGAAAGGGCGATGGTGGAGGGCGACCGGAGGCCAAGAGGTTCAGCCCCGAAGGAGCCGTAAACCGACTGTTAATACTGTATTCAACAACTGTTTATTACTGGGATTAAAGTTCTGATTTAGGATCTTCTGGGCGTTCGCAGTTGGGTTTGGCGTAGTTCCGATAGCCTAAATCATCCTAAATCAGATTTAGGACCAGATGAGGTTCCATTTCTTGTGGAGAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>344 193 153 137 119 35 19</canonical_bands>
                <polymorphic_bands>344 290 193 119 35 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAGTATGATGAAATTTTGGTTA</pcr_primer_p1>
		<pcr_primer_p2>TGTACTAGAAAGGTCGGTAATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAGTATGATGAAATTTTGGTTAACCATATGGTTTCGGATTAAGTCTCTTGCAAATGATGGCGCCTGTTTGGTGGTGGAGGAAAAATATATGCAAAGTTTCTAGATTATGATTCAGGTGACGGAAAGTTTCTAGACGAGTCTAGGGGCAGAACGGGAGCATACCGTAAAACCTGTATTAAAAGGGCCCTTCAGATTGAAAGACCCCTAGAGAACCCACGAAAAAATAGAATTACCGACCTTTCTAGTACA</canonical_amplicon>
		<polymorphic_amplicon>GGAGTATGATGAAATTTTGGTTAACCATATGGTTTCGGATTAAGTCTCTTGCAAATGATGGCGCCTGTTTGGTGGTGGAGGAAAAATATATGCAAAGTTTCTAGATTATGATTCAGGTGACGGAAAGTTTCTAGACGAGTCTAGGGGCAGAACGGGAGCATACCGTAAAACCTGTAWTAAAAGGGCCCTTCAGATTGAAAGACCCCTAGAGAACCCACGAAAAAATAGAATTACCGACCTTTCTAGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25732</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>154656</contig_pos>
        <strand></strand>
        <context>TTGAATTGTA[C/A]ATTTARTAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AGCTGTTTCAGTCTAAAGCTGTGTTCTGTAGTTGCATAATTTGAATTGTA</left_flank>
        <right_flank>ATTTAGTAAACACCAAATTTCATATTTCCAAATGGATGTTTTTTTTTCTG</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGACTAGAAAAGAAATCTTACGTGCAGTCTTATGACTTCTGTAGCGGAAATTGTTTGAACAATTTTTCAAGAAGTTTGTTATTTTTGCCACTGGGTACTGTTGTGTTTGAACAAGGAGACACAACTTTGTGTTTGTAGTTTGTCTTGATTTCTTTTCTTTTTTTTTTTTGAAGAGAGGAGGGATTTACATAGATGTCATAGAATCTAACAGGATTACCATTTTCTGAGAAACATGATATTCTGGAAGAATGATTATTAAATCACTCAAATTAACCGAAAATGCTAACAACGAGAAATGGGAAAAAATCTGTGGGAACTCTGTAAACTAAAAAGACGAATTTTCTGTGAATTCTGATAAACTACAAGCTCCGAACTACAATAAGCTTTCTGAATTGTGAAACTTCCTATTTTTATCAAGGACACAGTAATTTGTGGAAATCAAATATTAGCTGTTTCAGTCTAAAGCTGTGTTCTGTAGTTGCATAATTTGAATTGTACATTTAGTAAACACCAAATTTCATATTTCCAAATGGATGTTTTTTTTTCTGTAAAACTCGATTTTCTAACAAGTTCAGCATATTTTTTTTGTTACATTAAAGGGATAGAAACGAATTTTGAAAAAAATTATTGCGTACTTTTTTCAGATTTGTGAAATCGTAAGTGTTGATTCAAAACTAGAGTTCAAAACTGAAAATTCAAGTATGAGCTTTTCGATTTAATTTAACAAAATTCTTATATAATACGCTCTGCAAAGAATGATGAATTAATAACCGAACCCAAATGAACCGAACAACAACGAGCAACAGGAAAATTTCTGGGGAAACTTTGAAAACTAAAAATCTCTTTAGTTTTCAGTCGAAAAACGAGTTTTTTTGTGATTTCTGGAGAACTTCAAGTACCCGGTTACTTTTTTTGCTGCATTATAAAAAGTGATTTTTGTATTAAAATAATTTTTGCAAATCAAATTTTCGCTGTTTTAGCATTCTAAAACTAGCACA</canonical>
            <polymorphic>TTCGACTAGAAAAGAAATCTTACGTGCAGTCTTATGACTTCTGTAGCGGAAATTGTTTGAACAATTTTTCAAGAAGTTTGTTATTTTTGCCACTGGGTACTGTTGTGTTTGAACAAGGAGACACAACTTTGTGTTTGTAGTTTGTCTTGATTTCTTTTCTTTTTTTTTTTTGAAGAGAGGAGGGATTTACATAGATGTCATAGAATCTAACAGGATTACCATTTTCTGAGAAACATGATATTCTGGAAGAATGATTATTAAATCACTCAAATTAACCGAAAATGCTAACAACGAGAAATGGGAAAAAATCTGTGGGAACTCTGTAAACTAAAAAGACGAATTTTCTGTGAATTCTGATAAACTACAAGCTCCGAACTACAATAAGCTTTCTGAATTGTGAAACTTCCTATTTTTATCAAGGACACAGTAATTTGTGGAAATCAAATATTAGCTGTTTCAGTCTAAAGCTGTGTTCTGTAGTTGCATAATTTGAATTGTAMATTTAGTAAACACCAAATTTCATATTTCCAAATGGATGTTTTTTTTTCTGTAAAACTCGATTTTCTAACAAGTTCAGCATATTTTTTTTGTTACATTAAAGGGATAGAAACGAATTTTGAAAAAAATTATTGCGTACTTTTTTCAGATTTGTGAAATCGTAAGTGTTGATTCAAAACTAGAGTTCAAAACTGAAAATTCAAGTATGAGCTTTTCGATTTAATTTAACAAAATTCTTATATAATACGCTCTGCAAAGAATGATGAATTAATAACCGAACCCAAATGAACCGAACAACAACGAGCAACAGGAAAATTTCTGGGGAAACTTTGAAAACTAAAAATCTCTTTAGTTTTCAGTCGAAAAACGAGTTTTTTTGTGATTTCTGGAGAACTTCAAGTACCCGGTTACTTTTTTTGCTGCATTATAAAAAGTGATTTTTGTATTAAAATAATTTTTGCAAATCAAATTTTCGCTGTTTTAGCATTCTAAAACTAGCACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGTACA</site>
                <isoschizomers>
                    <enzyme>AauI</enzyme>
                    <enzyme>Bsp1407I</enzyme>
                    <enzyme>BsrGI</enzyme>
                    <enzyme>SspBI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>400 264 137 101 98</canonical_bands>
                <polymorphic_bands>537 264 101 98</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCCGAACTACAATAAGCTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATTCGTTTCTATCCCTTTAATGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTCCGAACTACAATAAGCTTTCTGAATTGTGAAACTTCCTATTTTTATCAAGGACACAGTAATTTGTGGAAATCAAATATTAGCTGTTTCAGTCTAAAGCTGTGTTCTGTAGTTGCATAATTTGAATTGTACATTTAGTAAACACCAAATTTCATATTTCCAAATGGATGTTTTTTTTTCTGTAAAACTCGATTTTCTAACAAGTTCAGCATATTTTTTTTGTTACATTAAAGGGATAGAAACGAAT</canonical_amplicon>
		<polymorphic_amplicon>CTCCGAACTACAATAAGCTTTCTGAATTGTGAAACTTCCTATTTTTATCAAGGACACAGTAATTTGTGGAAATCAAATATTAGCTGTTTCAGTCTAAAGCTGTGTTCTGTAGTTGCATAATTTGAATTGTAMATTTAGTAAACACCAAATTTCATATTTCCAAATGGATGTTTTTTTTTCTGTAAAACTCGATTTTCTAACAAGTTCAGCATATTTTTTTTGTTACATTAAAGGGATAGAAACGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25733</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>154662</contig_pos>
        <strand></strand>
        <context>TGTAMATTTA[G/A]TAAACACCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTCAGTCTAAAGCTGTGTTCTGTAGTTGCATAATTTGAATTGTACATTTA</left_flank>
        <right_flank>TAAACACCAAATTTCATATTTCCAAATGGATGTTTTTTTTTCTGTAAAAC</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGAAAAGAAATCTTACGTGCAGTCTTATGACTTCTGTAGCGGAAATTGTTTGAACAATTTTTCAAGAAGTTTGTTATTTTTGCCACTGGGTACTGTTGTGTTTGAACAAGGAGACACAACTTTGTGTTTGTAGTTTGTCTTGATTTCTTTTCTTTTTTTTTTTTGAAGAGAGGAGGGATTTACATAGATGTCATAGAATCTAACAGGATTACCATTTTCTGAGAAACATGATATTCTGGAAGAATGATTATTAAATCACTCAAATTAACCGAAAATGCTAACAACGAGAAATGGGAAAAAATCTGTGGGAACTCTGTAAACTAAAAAGACGAATTTTCTGTGAATTCTGATAAACTACAAGCTCCGAACTACAATAAGCTTTCTGAATTGTGAAACTTCCTATTTTTATCAAGGACACAGTAATTTGTGGAAATCAAATATTAGCTGTTTCAGTCTAAAGCTGTGTTCTGTAGTTGCATAATTTGAATTGTACATTTAGTAAACACCAAATTTCATATTTCCAAATGGATGTTTTTTTTTCTGTAAAACTCGATTTTCTAACAAGTTCAGCATATTTTTTTTGTTACATTAAAGGGATAGAAACGAATTTTGAAAAAAATTATTGCGTACTTTTTTCAGATTTGTGAAATCGTAAGTGTTGATTCAAAACTAGAGTTCAAAACTGAAAATTCAAGTATGAGCTTTTCGATTTAATTTAACAAAATTCTTATATAATACGCTCTGCAAAGAATGATGAATTAATAACCGAACCCAAATGAACCGAACAACAACGAGCAACAGGAAAATTTCTGGGGAAACTTTGAAAACTAAAAATCTCTTTAGTTTTCAGTCGAAAAACGAGTTTTTTTGTGATTTCTGGAGAACTTCAAGTACCCGGTTACTTTTTTTGCTGCATTATAAAAAGTGATTTTTGTATTAAAATAATTTTTGCAAATCAAATTTTCGCTGTTTTAGCATTCTAAAACTAGCACAGGTTTT</canonical>
            <polymorphic>TAGAAAAGAAATCTTACGTGCAGTCTTATGACTTCTGTAGCGGAAATTGTTTGAACAATTTTTCAAGAAGTTTGTTATTTTTGCCACTGGGTACTGTTGTGTTTGAACAAGGAGACACAACTTTGTGTTTGTAGTTTGTCTTGATTTCTTTTCTTTTTTTTTTTTGAAGAGAGGAGGGATTTACATAGATGTCATAGAATCTAACAGGATTACCATTTTCTGAGAAACATGATATTCTGGAAGAATGATTATTAAATCACTCAAATTAACCGAAAATGCTAACAACGAGAAATGGGAAAAAATCTGTGGGAACTCTGTAAACTAAAAAGACGAATTTTCTGTGAATTCTGATAAACTACAAGCTCCGAACTACAATAAGCTTTCTGAATTGTGAAACTTCCTATTTTTATCAAGGACACAGTAATTTGTGGAAATCAAATATTAGCTGTTTCAGTCTAAAGCTGTGTTCTGTAGTTGCATAATTTGAATTGTACATTTARTAAACACCAAATTTCATATTTCCAAATGGATGTTTTTTTTTCTGTAAAACTCGATTTTCTAACAAGTTCAGCATATTTTTTTTGTTACATTAAAGGGATAGAAACGAATTTTGAAAAAAATTATTGCGTACTTTTTTCAGATTTGTGAAATCGTAAGTGTTGATTCAAAACTAGAGTTCAAAACTGAAAATTCAAGTATGAGCTTTTCGATTTAATTTAACAAAATTCTTATATAATACGCTCTGCAAAGAATGATGAATTAATAACCGAACCCAAATGAACCGAACAACAACGAGCAACAGGAAAATTTCTGGGGAAACTTTGAAAACTAAAAATCTCTTTAGTTTTCAGTCGAAAAACGAGTTTTTTTGTGATTTCTGGAGAACTTCAAGTACCCGGTTACTTTTTTTGCTGCATTATAAAAAGTGATTTTTGTATTAAAATAATTTTTGCAAATCAAATTTTCGCTGTTTTAGCATTCTAAAACTAGCACAGGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 319 183</canonical_bands>
                <polymorphic_bands>681 319</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTTTCAGTCTAAAGCTGTGTT</pcr_primer_p1>
		<pcr_primer_p2>TTGAATTTTCAGTTTTGAACTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGTTTCAGTCTAAAGCTGTGTTCTGTAGTTGCATAATTTGAATTGTACATTTAGTAAACACCAAATTTCATATTTCCAAATGGATGTTTTTTTTTCTGTAAAACTCGATTTTCTAACAAGTTCAGCATATTTTTTTTGTTACATTAAAGGGATAGAAACGAATTTTGAAAAAAATTATTGCGTACTTTTTTCAGATTTGTGAAATCGTAAGTGTTGATTCAAAACTAGAGTTCAAAACTGAAAATTCAA</canonical_amplicon>
		<polymorphic_amplicon>CTGTTTCAGTCTAAAGCTGTGTTCTGTAGTTGCATAATTTGAATTGTACATTTARTAAACACCAAATTTCATATTTCCAAATGGATGTTTTTTTTTCTGTAAAACTCGATTTTCTAACAAGTTCAGCATATTTTTTTTGTTACATTAAAGGGATAGAAACGAATTTTGAAAAAAATTATTGCGTACTTTTTTCAGATTTGTGAAATCGTAAGTGTTGATTCAAAACTAGAGTTCAAAACTGAAAATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25734</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>158972</contig_pos>
        <strand>+</strand>
        <context>ACAATCAAAA[C/T]AACATCAACG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAACCGGAAGAACCACTGGATACGGACCACCAGTTTTCGACAATCAAAA</left_flank>
        <right_flank>AACATCAACGTATCAATGGCAAATCACTCTGGCTCAACTTTGAATGCTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGCAAGAGGAGAATTTCGCACTGGTTTTTTAACGAGGGTGTGCATTTTGACGTGATGGTGTACAGTGGCTATTGTAATACGTTCATATACTCTCTCGGTAGGCCGACGCGTGTGACCGCGTAGATAACCTGTAGCAACGCGGCATCTCTGATATTATACCCAAAAGTTGAATTTCTTAAAGAACTTTTTTCGATAGCTTATTTCATGAAAGCCAGCTTTTTAATATACCTAGATCATACGAAAAAGTAATAAAATTGTCATAGAATGTTTGTTAAAGTCAAAGCCCTGTGTCTTAATTATTATTGAAGAGAAGTACTTCTGTTTGATATCAAACATGTGAAACAGAAACTATTTTTTAACTGAAATTACTTTTACTAACTTTCAAACCATATTGCAGTCCAACTTGAACGTGATCGTATTCATGGTTCAAAACGGACAAATCACCACTCGAACCGGAAGAACCACTGGATACGGACCACCAGTTTTCGACAATCAAAACAACATCAACGTATCAATGGCAAATCACTCTGGCTCAACTTTGAATGCTCTCGTTTCTGTACCATTGAACTTCAACGGAATGAATGTTCAGAATTGTCAGACTTGGAATGTAAGTTCAAAATTATGGGATTTCGATTATCAACTTTTATTAGATTTCTATTTTGAAACTTATTTAAGACACAAATTTGAAACAGAAAAACAATTAAATATGTTTAACTTTGATTGCAAAAGAGCTATGTTCCTTTAAACATTTTCAGTTTGTCCAAAGCGGACCAATCAACAACGGACAAATGGGAGTACACACATCCAGACCGGATCAAGTCAACAATGTTTGCGCGTCACAGTGTAGATGACATTATACTTGATTGGAAAAAACTGTATTTGATTGGAATAAATAAAATATTTTCGGGCAATTACGTTTAATTGGAAACAGTACAAAAACTTGAATGAACAAAAATAAAGGTTGTGAAAAATAATAATTAAAAATTCTAGTTCAAAAAT</canonical>
            <polymorphic>GTGCAAGAGGAGAATTTCGCACTGGTTTTTTAACGAGGGTGTGCATTTTGACGTGATGGTGTACAGTGGCTATTGTAATACGTTCATATACTCTCTCGGTAGGCCGACGCGTGTGACCGCGTAGATAACCTGTAGCAACGCGGCATCTCTGATATTATACCCAAAAGTTGAATTTCTTAAAGAACTTTTTTCGATAGCTTATTTCATGAAAGCCAGCTTTTTAATATACCTAGATCATACGAAAAAGTAATAAAATTGTCATAGAATGTTTGTTAAAGTCAAAGCCCTGTGTCTTAATTATTATTGAAGAGAAGTACTTCTGTTTGATATCAAACATGTGAAACAGAAACTATTTTTTAACTGAAATTACTTTTACTAACTTTCAAACCATATTGCAGTCCAACTTGAACGTGATCGTATTCATGGTTCAAAACGGACAAATCACCACTCGAACCGGAAGAACCACTGGATACGGACCACCAGTTTTCGACAATCAAAAYAACATCAACGTATCAATGGCAAATCACTCTGGCTCAACTTTGAATGCTCTCGTTTCTGTACCATTGAACTTCAACGGAATGAATGTTCAGAATTGTCAGACTTGGAATGTAAGTTCAAAATTATGGGATTTCGATTATCAACTTTTATTAGATTTCTATTTTGAAACTTATTTAAGACACAAATTTGAAACAGAAAAACAATTAAATATGTTTAACTTTGATTGCAAAAGAGCTATGTTCCTTTAAACATTTTCAGTTTGTCCAAAGCGGACCAATCAACAACGGACAAATGGGAGTACACACATCCAGACCGGATCAAGTCAACAATGTTTGCGCGTCACAGTGTAGATGACATTATACTTGATTGGAAAAAACTGTATTTGATTGGAATAAATAAAATATTTTCGGGCAATTACGTTTAATTGGAAACAGTACAAAAACTTGAATGAACAAAAATAAAGGTTGTGAAAAATAATAATTAAAAATTCTAGTTCAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTCAAACCATATTGCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TCCCATAATTTTGAACTTACATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTTCAAACCATATTGCAGTCCAACTTGAACGTGATCGTATTCATGGTTCAAAACGGACAAATCACCACTCGAACCGGAAGAACCACTGGATACGGACCACCAGTTTTCGACAATCAAAACAACATCAACGTATCAATGGCAAATCACTCTGGCTCAACTTTGAATGCTCTCGTTTCTGTACCATTGAACTTCAACGGAATGAATGTTCAGAATTGTCAGACTTGGAATGTAAGTTCAAAATTATGGGA</canonical_amplicon>
		<polymorphic_amplicon>ACTTTCAAACCATATTGCAGTCCAACTTGAACGTGATCGTATTCATGGTTCAAAACGGACAAATCACCACTCGAACCGGAAGAACCACTGGATACGGACCACCAGTTTTCGACAATCAAAAYAACATCAACGTATCAATGGCAAATCACTCTGGCTCAACTTTGAATGCTCTCGTTTCTGTACCATTGAACTTCAACGGAATGAATGTTCAGAATTGTCAGACTTGGAATGTAAGTTCAAAATTATGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25735</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>159367</contig_pos>
        <strand>+</strand>
        <context>TTGGAATAAA[C/T]AAAATATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTAGATGACATTATACTTGATTGGAAAAAACTGTATTTGATTGGAATAAA</left_flank>
        <right_flank>AAAATATTTTCGGGCAATTACGTTTAATTGGAAACAGTACAAAAACTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTCCAACTTGAACGTGATCGTATTCATGGTTCAAAACGGACAAATCACCACTCGAACCGGAAGAACCACTGGATACGGACCACCAGTTTTCGACAATCAAAACAACATCAACGTATCAATGGCAAATCACTCTGGCTCAACTTTGAATGCTCTCGTTTCTGTACCATTGAACTTCAACGGAATGAATGTTCAGAATTGTCAGACTTGGAATGTAAGTTCAAAATTATGGGATTTCGATTATCAACTTTTATTAGATTTCTATTTTGAAACTTATTTAAGACACAAATTTGAAACAGAAAAACAATTAAATATGTTTAACTTTGATTGCAAAAGAGCTATGTTCCTTTAAACATTTTCAGTTTGTCCAAAGCGGACCAATCAACAACGGACAAATGGGAGTACACACATCCAGACCGGATCAAGTCAACAATGTTTGCGCGTCACAGTGTAGATGACATTATACTTGATTGGAAAAAACTGTATTTGATTGGAATAAATAAAATATTTTCGGGCAATTACGTTTAATTGGAAACAGTACAAAAACTTGAATGAACAAAAATAAAGGTTGTGAAAAATAATAATTAAAAATTCTAGTTCAAAAATATTTGCCACAGTTAAACATATTTCCCTCCTGAATAGTTTCCGCTCTTTGTGATACCGAGAAAAAAAATTGGTAGGCAAAACCCTATCAAATATTTGCCACATTTTCTTCCTCAAAAACTTCTGTTTTCCAAATGATTCGACACCCACATAAATAAATCGAAAAGTAAACACTTGGTGTGAGCTTAAATTCTCGAAAACCAAAAATCGAAACGGAAAAAAATGTTGAGCTCTCAAATTCTGATACTTGCTACTATTGGAGTGGTTGCATCGCAGACATGTAATTTCCAAAAGTCAGCTGTGAAAGCGAATTGGAAAATCGTGAATGGAGCATTGCAAATTCAGTATCAGAATATATAATCAATGGACTGCAATTGGATTTGGTCCTGGAATGGTGA</canonical>
            <polymorphic>CAGTCCAACTTGAACGTGATCGTATTCATGGTTCAAAACGGACAAATCACCACTCGAACCGGAAGAACCACTGGATACGGACCACCAGTTTTCGACAATCAAAACAACATCAACGTATCAATGGCAAATCACTCTGGCTCAACTTTGAATGCTCTCGTTTCTGTACCATTGAACTTCAACGGAATGAATGTTCAGAATTGTCAGACTTGGAATGTAAGTTCAAAATTATGGGATTTCGATTATCAACTTTTATTAGATTTCTATTTTGAAACTTATTTAAGACACAAATTTGAAACAGAAAAACAATTAAATATGTTTAACTTTGATTGCAAAAGAGCTATGTTCCTTTAAACATTTTCAGTTTGTCCAAAGCGGACCAATCAACAACGGACAAATGGGAGTACACACATCCAGACCGGATCAAGTCAACAATGTTTGCGCGTCACAGTGTAGATGACATTATACTTGATTGGAAAAAACTGTATTTGATTGGAATAAAYAAAATATTTTCGGGCAATTACGTTTAATTGGAAACAGTACAAAAACTTGAATGAACAAAAATAAAGGTTGTGAAAAATAATAATTAAAAATTCTAGTTCAAAAATATTTGCCACAGTTAAACATATTTCCCTCCTGAATAGTTTCCGCTCTTTGTGATACCGAGAAAAAAAATTGGTAGGCAAAACCCTATCAAATATTTGCCACATTTTCTTCCTCAAAAACTTCTGTTTTCCAAATGATTCGACACCCACATAAATAAATCGAAAAGTAAACACTTGGTGTGAGCTTAAATTCTCGAAAACCAAAAATCGAAACGGAAAAAAATGTTGAGCTCTCAAATTCTGATACTTGCTACTATTGGAGTGGTTGCATCGCAGACATGTAATTTCCAAAAGTCAGCTGTGAAAGCGAATTGGAAAATCGTGAATGGAGCATTGCAAATTCAGTATCAGAATATATAATCAATGGACTGCAATTGGATTTGGTCCTGGAATGGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTTTAACTTTGATTGCAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGTTCATTCAAGTTTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGTTTAACTTTGATTGCAAAAGAGCTATGTTCCTTTAAACATTTTCAGTTTGTCCAAAGCGGACCAATCAACAACGGACAAATGGGAGTACACACATCCAGACCGGATCAAGTCAACAATGTTTGCGCGTCACAGTGTAGATGACATTATACTTGATTGGAAAAAACTGTATTTGATTGGAATAAATAAAATATTTTCGGGCAATTACGTTTAATTGGAAACAGTACAAAAACTTGAATGAACAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATGTTTAACTTTGATTGCAAAAGAGCTATGTTCCTTTAAACATTTTCAGTTTGTCCAAAGCGGACCAATCAACAACGGACAAATGGGAGTACACACATCCAGACCGGATCAAGTCAACAATGTTTGCGCGTCACAGTGTAGATGACATTATACTTGATTGGAAAAAACTGTATTTGATTGGAATAAAYAAAATATTTTCGGGCAATTACGTTTAATTGGAAACAGTACAAAAACTTGAATGAACAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25736</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>161351</contig_pos>
        <strand>+</strand>
        <context>AACGTGATCR[A/G]GTTTATGGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTACATTCGCTGACTAACCAACCAATTTCTAGTCCAATTGAACGTGATCG</left_flank>
        <right_flank>GTTTATGGTTCAAAACGGTCAAATCACCACTCGAACCGGAAGAACCACTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAAATTTTCAAAAAGCAGGCCGGCTCGCGGGCCGTCCATGTGTAATTTTTTTCCGGCCCGGCCCGGCCCGGTCCGGCCATCTTTTCCACAAGTATGATTTTGATGATGCTACAGAAGAATTTTCAAAGTTTTTTTGAAGTGAATATAAAGTTTTTCGTGGCGGTGTACAGTGTGGCTATCGTACCCCTTTCCTATAATTCATCGGTCGGCAGCCGACGCTTATGACCACGTAGTTCAGCCTGTAGCGGCAGGGAACCTGAAATATTTTGAGCTGATTTTGACAGTTGTATCTCCTATAAGCTTTTTTAACAGATGAAGCGAAGAAGTAAAAAAATCCGCATATAATGTTTTAGGAATGTTTTTTGGAAGTAACGATTGTTCAACAAGAAGAAACTTATTTTTTCTTAAATATCAAGCATGTGAAACAGTAACTACCGTTTCATCTGAATTACATTCGCTGACTAACCAACCAATTTCTAGTCCAATTGAACGTGATCGTGTTTATGGTTCAAAACGGTCAAATCACCACTCGAACCGGAAGAACCACTGGATACGGACCACCAGTTTTCGACAATCAAAACAACATCAACGTATCAATGGCAAATCACTCTGGCTCAACTTTGAATGCTCTCTTTTCTGTTCCATGGAATGTTCGGAATTGTCAAGCTATGAATGTAAGTTGTAGGATTTGTAACAACTAGCTTTGTACTTTGAAACCCATTTAAAAGACAGAAAACATTTAGATTCCAATTTTAAATTGAAGTGGGATTACAGACCAAATTAGCGATGTTCCTTTAAAATCTTAAACATTTTCAGTTCGTACAAAGCGGACCCATAAACAACGGACAAATGGGAGTACACACATCCAGACCGGATCAAGTCAACAATGTTTGCGCGTCACAGTGTAGATGGCATTATACTTGATTGGAAAACACTGTATTTGATTGGAATAAATAAAATATTTTCGGGCAATTACGTTTAATTGGAAACAGTACAAAA</canonical>
            <polymorphic>CGAAATTTTCAAAAAGCAGGCCGGCTCGCGGGCCGTCCATGTGTAATTTTTTTCCGGCCCGGCCCGGCCCGGTCCGGCCATCTTTTCCACAAGTATGATTTTGATGATGCTACAGAAGAATTTTCAAAGTTTTTTTGAAGTGAATATAAAGTTTTTCGTGGCGGTGTACAGTGTGGCTATCGTACCCCTTTCCTATAATTCATCGGTCGGCAGCCGACGCTTATGACCACGTAGTTCAGCCTGTAGCGGCAGGGAACCTGAAATATTTTGAGCTGATTTTGACAGTTGTATCTCCTATAAGCTTTTTTAACAGATGAAGCGAAGAAGTAAAAAAATCCGCATATAATGTTTTAGGAATGTTTTTTGGAAGTAACGATTGTTCAACAAGAAGAAACTTATTTTTTCTTAAATATCAAGCATGTGAAACAGTAACTACCGTTTCATCTGAATTACATTCGCTGACTAACCAACCAATTTCTAGTCCAATTGAACGTGATCGRGTTTATGGTTCAAAACGGTCAAATCACCACTCGAACCGGAAGAACCACTGGATACGGACCACCAGTTTTCGACAATCAAAACAACATCAACGTATCAATGGCAAATCACTCTGGCTCAACTTTGAATGCTCTCTTTTCTGTTCCATGGAATGTTCGGAATTGTCAAGCTATGAATGTAAGTTGTAGGATTTGTAACAACTAGCTTTGTACTTTGAAACCCATTTAAAAGACAGAAAACATTTAGATTCCAATTTTAAATTGAAGTGGGATTACAGACCAAATTAGCGATGTTCCTTTAAAATCTTAAACATTTTCAGTTCGTACAAAGCGGACCCATAAACAACGGACAAATGGGAGTACACACATCCAGACCGGATCAAGTCAACAATGTTTGCGCGTCACAGTGTAGATGGCATTATACTTGATTGGAAAACACTGTATTTGATTGGAATAAATAAAATATTTTCGGGCAATTACGTTTAATTGGAAACAGTACAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>194 158 95 72 65 54 53 47 46 43 38 29 25 18 18 14 7 6 6 5 3 2 2</canonical_bands>
                <polymorphic_bands>194 158 95 72 65 54 53 47 46 43 38 31 29 18 18 14 7 6 5 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTACCGTTTCATCTGAATTAC</pcr_primer_p1>
		<pcr_primer_p2>CTTACATTCATAGCTTGACAATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACTACCGTTTCATCTGAATTACATTCGCTGACTAACCAACCAATTTCTAGTCCAATTGAACGTGATCGTGTTTATGGTTCAAAACGGTCAAATCACCACTCGAACCGGAAGAACCACTGGATACGGACCACCAGTTTTCGACAATCAAAACAACATCAACGTATCAATGGCAAATCACTCTGGCTCAACTTTGAATGCTCTCTTTTCTGTTCCATGGAATGTTCGGAATTGTCAAGCTATGAATGTAAG</canonical_amplicon>
		<polymorphic_amplicon>AACTACCGTTTCATCTGAATTACATTCGCTGACTAACCAACCAATTTCTAGTCCAATTGAACGTGATCGRGTTTATGGTTCAAAACGGTCAAATCACCACTCGAACCGGAAGAACCACTGGATACGGACCACCAGTTTTCGACAATCAAAACAACATCAACGTATCAATGGCAAATCACTCTGGCTCAACTTTGAATGCTCTCTTTTCTGTTCCATGGAATGTTCGGAATTGTCAAGCTATGAATGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25737</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>179029</contig_pos>
        <strand>+</strand>
        <context>TGTGGGACGA[G/T]GATTGAGGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAGAAATTTTGTTTGAATATGCCTCTCGAGGAGTTGAACGTGTGGGACGA</left_flank>
        <right_flank>GATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCAGAGCGTCGCACGGTGGTGGTTCTGAGATAATTGATTAAGCTCCATTATTTTGGTTCTAATAAGAGCTATCAAAAAATGTTCAACAGATAAATTTGGTGATATTATGATAAACTTTTTATCAGTTGACTTTTAGAGAAATGGAAATAATTGAGCTCAACTTGCAAGTATAGATCCGTTCTTGAGTGATTGAATATTAAATAAATTGTACTTCTTACAGAATTTTTCCAAATTTCAGAGGAAAAAAAAACGAAAACTCGGTTTCAAAACATTCATAGAACACTTTTCGAAATAAATTGTTTACTAAATGTATGAAACGACGATTTATTTTTGAAAAGTGTAAAAATTAGGCACTGAAATGATAGTTTTGCCACTTGAAAACATCTTAGCTCGCTCTATGTTCAAAATTTAAATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTAGAAATTTTGTTTGAATATGCCTCTCGAGGAGTTGAACGTGTGGGACGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGCATTCATAAAGGCGAGGACGACATCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCACACCTTTAAAAGCTAAAACATTGATCATGTAAATGTCCATATTTCAATTCATGACCCCCTGAAACATTGAAAAAATATCTTACCATTTTGCCCGAATTTGTTCAAAATCCATTTAACCTTTTCAATATCCCTCCGAACAATACAATGAACCAATTGCCATGGACAAGCTAATGCATAAATCGAAATAATCATAGTGATAATGAGCATGTACTGAGTCTCCGCCATATCACTGTCCTTTTTGAACAACAACAAAGTCACAAACATAAATCCATTGCTCTGAACAAAATATCTTGAAGCCTGCCAAAAAAAGGAAATTTACCA</canonical>
            <polymorphic>AACCAGAGCGTCGCACGGTGGTGGTTCTGAGATAATTGATTAAGCTCCATTATTTTGGTTCTAATAAGAGCTATCAAAAAATGTTCAACAGATAAATTTGGTGATATTATGATAAACTTTTTATCAGTTGACTTTTAGAGAAATGGAAATAATTGAGCTCAACTTGCAAGTATAGATCCGTTCTTGAGTGATTGAATATTAAATAAATTGTACTTCTTACAGAATTTTTCCAAATTTCAGAGGAAAAAAAAACGAAAACTCGGTTTCAAAACATTCATAGAACACTTTTCGAAATAAATTGTTTACTAAATGTATGAAACGACGATTTATTTTTGAAAAGTGTAAAAATTAGGCACTGAAATGATAGTTTTGCCACTTGAAAACATCTTAGCTCGCTCTATGTTCAAAATTTAAATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTAGAAATTTTGTTTGAATATGCCTCTCGAGGAGTTGAACGTGTGGGACGAKGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGCATTCATAAAGGCGAGGACGACATCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCACACCTTTAAAAGCTAAAACATTGATCATGTAAATGTCCATATTTCAATTCATGACCCCCTGAAACATTGAAAAAATATCTTACCATTTTGCCCGAATTTGTTCAAAATCCATTTAACCTTTTCAATATCCCTCCGAACAATACAATGAACCAATTGCCATGGACAAGCTAATGCATAAATCGAAATAATCATAGTGATAATGAGCATGTACTGAGTCTCCGCCATATCACTGTCCTTTTTGAACAACAACAAAGTCACAAACATAAATCCATTGCTCTGAACAAAATATCTTGAAGCCTGCCAAAAAAAGGAAATTTACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACTTGAAAACATCTTAGCTC</pcr_primer_p1>
		<pcr_primer_p2>TGTACAACGCTTAATGTCACTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCACTTGAAAACATCTTAGCTCGCTCTATGTTCAAAATTTAAATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTAGAAATTTTGTTTGAATATGCCTCTCGAGGAGTTGAACGTGTGGGACGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGCATTCATAAAGGCGAGGACGACATCTGTACGCAGAGTGACATTAAGCGTTGTACA</canonical_amplicon>
		<polymorphic_amplicon>CCACTTGAAAACATCTTAGCTCGCTCTATGTTCAAAATTTAAATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTAGAAATTTTGTTTGAATATGCCTCTCGAGGAGTTGAACGTGTGGGACGAKGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGCATTCATAAAGGCGAGGACGACATCTGTACGCAGAGTGACATTAAGCGTTGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25738</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>190730</contig_pos>
        <strand></strand>
        <context>GGATCCAGGT[C/A]ACMCGGATYC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CAAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTCACCCGGATCCAGGT</left_flank>
        <right_flank>ACCCGGATCCAGGTCACTCAGATACAGGTCACCCGGATCCAGATCACCCG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATCAAAAAAAGCTACGCCTTTAAAATTCTCAGGTCCCACTTTTTTAAATTCGACAATAGTTGGTATGAAAATATTGATTTTAAAAGAAACTATGAGGTATGAAAATAACCTTACATTAAAAACAAAGAAAGTGAGTGGGAACATGACACTGGATATCGAATCGATGCGTTCTGGTGTCCAACATCCCGTTCCACACGAATTCAGAGATTTTGAAGATTCGGTGCATCCGGGAGGAAACATGAAACGACGTTCGGAGATGATGCCGTGGGGAGATTCTTCACGCGATGGCTGGAAATAGTTAAATGGGGGCAAACAGTGTTAGATATGGAACTACCAGTATATTTGCAGGTCACCCAGATACAGATCGCCCGTATCCAGGTTACCCGGCCAAGGTAACCCGAATCCAGGTCACCCAGATACAGGTCGCCCGGATCCAGGTTATCCGATCAAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTCACCCGGATCCAGGTCACCCGGATCCAGGTCACTCAGATACAGGTCACCCGGATCCAGATCACCCGGTCAAGGTCACCCGGATCCAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTAACACGGATTCAGGCCCCAGGCCCCAGGCCCCTTCTCCGGGCTCACCTCTCGGGAGCCCCGAGAAAAGGAGAACTGATTATTCCTTTGTTTCTCTCTTCTTTTATATTACTCTCCCAGAGGTCAATGGTTTCTAAACCAAATCACGTAGTTGTTTTTTTCTAGAATTTTAAAAATTTCTTTCGAAGCATTTTTTGCAACGGGGTTTCTTTTTTTTTAAATTTTTTTTTCATCGCGTTTGAATAAACTGGAATTTTCATTTTTGAAATCTGTGAAATTCCTTAAAAAGATCGTTCCTTTGAGCACCGATCTATAAAACTTGAGAAAGCGGAATTCAATTAATTCTGAGGTTTAAAAATGTCTGAATTCCTCGAGTTTTATGTTAAAAGGGTCGGGGGAC</canonical>
            <polymorphic>AGATCAAAAAAAGCTACGCCTTTAAAATTCTCAGGTCCCACTTTTTTAAATTCGACAATAGTTGGTATGAAAATATTGATTTTAAAAGAAACTATGAGGTATGAAAATAACCTTACATTAAAAACAAAGAAAGTGAGTGGGAACATGACACTGGATATCGAATCGATGCGTTCTGGTGTCCAACATCCCGTTCCACACGAATTCAGAGATTTTGAAGATTCGGTGCATCCGGGAGGAAACATGAAACGACGTTCGGAGATGATGCCGTGGGGAGATTCTTCACGCGATGGCTGGAAATAGTTAAATGGGGGCAAACAGTGTTAGATATGGAACTACCAGTATATTTGCAGGTCACCCAGATACAGATCGCCCGTATCCAGGTTACCCGGCCAAGGTAACCCGAATCCAGGTCACCCAGATACAGGTCGCCCGGATCCAGGTTATCCGATCAAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTCACCCGGATCCAGGTMACCCGGATCCAGGTCACTCAGATACAGGTCACCCGGATCCAGATCACCCGGTCAAGGTCACCCGGATCCAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTAACACGGATTCAGGCCCCAGGCCCCAGGCCCCTTCTCCGGGCTCACCTCTCGGGAGCCCCGAGAAAAGGAGAACTGATTATTCCTTTGTTTCTCTCTTCTTTTATATTACTCTCCCAGAGGTCAATGGTTTCTAAACCAAATCACGTAGTTGTTTTTTTCTAGAATTTTAAAAATTTCTTTCGAAGCATTTTTTGCAACGGGGTTTCTTTTTTTTTAAATTTTTTTTTCATCGCGTTTGAATAAACTGGAATTTTCATTTTTGAAATCTGTGAAATTCCTTAAAAAGATCGTTCCTTTGAGCACCGATCTATAAAACTTGAGAAAGCGGAATTCAATTAATTCTGAGGTTTAAAAATGTCTGAATTCCTCGAGTTTTATGTTAAAAGGGTCGGGGGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>128 99 95 95 59 44 44 41 40 38 34 31 28 28 17 16 15 15 15 15 15 15 15 14 14 13 11 4 2</canonical_bands>
                <polymorphic_bands>128 99 95 95 59 44 44 41 40 38 34 31 30 28 28 17 16 15 15 15 15 15 14 14 13 11 4 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>414 350 59 44 29 15 15 15 15 15 15 14</canonical_bands>
                <polymorphic_bands>414 350 59 44 30 29 15 15 15 15 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGGTCACCCAGATACAGAT</pcr_primer_p1>
		<pcr_primer_p2>TGAATCCGTGTTACCTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>CAGGTCACCCAGATACAGATCGCCCGTATCCAGGTTACCCGGCCAAGGTAACCCGAATCCAGGTCACCCAGATACAGGTCGCCCGGATCCAGGTTATCCGATCAAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTCACCCGGATCCAGGTCACCCGGATCCAGGTCACTCAGATACAGGTCACCCGGATCCAGATCACCCGGTCAAGGTCACCCGGATCCAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTAACACGGATTCA</canonical_amplicon>
		<polymorphic_amplicon>CAGGTCACCCAGATACAGATCGCCCGTATCCAGGTTACCCGGCCAAGGTAACCCGAATCCAGGTCACCCAGATACAGGTCGCCCGGATCCAGGTTATCCGATCAAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTCACCCGGATCCAGGTMACCCGGATCCAGGTCACTCAGATACAGGTCACCCGGATCCAGATCACCCGGTCAAGGTCACCCGGATCCAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTAACACGGATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25739</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>190733</contig_pos>
        <strand></strand>
        <context>TCCAGGTMAC[C/A]CGGATYCAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GGTCACCCGGATCCAGGTCACCCGGTCAAGGTCACCCGGATCCAGGTCAC</left_flank>
        <right_flank>CGGATCCAGGTCACTCAGATACAGGTCACCCGGATCCAGATCACCCGGTC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAAAAAAGCTACGCCTTTAAAATTCTCAGGTCCCACTTTTTTAAATTCGACAATAGTTGGTATGAAAATATTGATTTTAAAAGAAACTATGAGGTATGAAAATAACCTTACATTAAAAACAAAGAAAGTGAGTGGGAACATGACACTGGATATCGAATCGATGCGTTCTGGTGTCCAACATCCCGTTCCACACGAATTCAGAGATTTTGAAGATTCGGTGCATCCGGGAGGAAACATGAAACGACGTTCGGAGATGATGCCGTGGGGAGATTCTTCACGCGATGGCTGGAAATAGTTAAATGGGGGCAAACAGTGTTAGATATGGAACTACCAGTATATTTGCAGGTCACCCAGATACAGATCGCCCGTATCCAGGTTACCCGGCCAAGGTAACCCGAATCCAGGTCACCCAGATACAGGTCGCCCGGATCCAGGTTATCCGATCAAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTCACCCGGATCCAGGTCACCCGGATCCAGGTCACTCAGATACAGGTCACCCGGATCCAGATCACCCGGTCAAGGTCACCCGGATCCAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTAACACGGATTCAGGCCCCAGGCCCCAGGCCCCTTCTCCGGGCTCACCTCTCGGGAGCCCCGAGAAAAGGAGAACTGATTATTCCTTTGTTTCTCTCTTCTTTTATATTACTCTCCCAGAGGTCAATGGTTTCTAAACCAAATCACGTAGTTGTTTTTTTCTAGAATTTTAAAAATTTCTTTCGAAGCATTTTTTGCAACGGGGTTTCTTTTTTTTTAAATTTTTTTTTCATCGCGTTTGAATAAACTGGAATTTTCATTTTTGAAATCTGTGAAATTCCTTAAAAAGATCGTTCCTTTGAGCACCGATCTATAAAACTTGAGAAAGCGGAATTCAATTAATTCTGAGGTTTAAAAATGTCTGAATTCCTCGAGTTTTATGTTAAAAGGGTCGGGGGACATG</canonical>
            <polymorphic>TCAAAAAAAGCTACGCCTTTAAAATTCTCAGGTCCCACTTTTTTAAATTCGACAATAGTTGGTATGAAAATATTGATTTTAAAAGAAACTATGAGGTATGAAAATAACCTTACATTAAAAACAAAGAAAGTGAGTGGGAACATGACACTGGATATCGAATCGATGCGTTCTGGTGTCCAACATCCCGTTCCACACGAATTCAGAGATTTTGAAGATTCGGTGCATCCGGGAGGAAACATGAAACGACGTTCGGAGATGATGCCGTGGGGAGATTCTTCACGCGATGGCTGGAAATAGTTAAATGGGGGCAAACAGTGTTAGATATGGAACTACCAGTATATTTGCAGGTCACCCAGATACAGATCGCCCGTATCCAGGTTACCCGGCCAAGGTAACCCGAATCCAGGTCACCCAGATACAGGTCGCCCGGATCCAGGTTATCCGATCAAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTCACCCGGATCCAGGTCACMCGGATCCAGGTCACTCAGATACAGGTCACCCGGATCCAGATCACCCGGTCAAGGTCACCCGGATCCAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTAACACGGATTCAGGCCCCAGGCCCCAGGCCCCTTCTCCGGGCTCACCTCTCGGGAGCCCCGAGAAAAGGAGAACTGATTATTCCTTTGTTTCTCTCTTCTTTTATATTACTCTCCCAGAGGTCAATGGTTTCTAAACCAAATCACGTAGTTGTTTTTTTCTAGAATTTTAAAAATTTCTTTCGAAGCATTTTTTGCAACGGGGTTTCTTTTTTTTTAAATTTTTTTTTCATCGCGTTTGAATAAACTGGAATTTTCATTTTTGAAATCTGTGAAATTCCTTAAAAAGATCGTTCCTTTGAGCACCGATCTATAAAACTTGAGAAAGCGGAATTCAATTAATTCTGAGGTTTAAAAATGTCTGAATTCCTCGAGTTTTATGTTAAAAGGGTCGGGGGACATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>363 227 156 48 44 30 29 15 15 15 15 15 14 14</canonical_bands>
                <polymorphic_bands>363 227 156 48 45 44 29 15 15 15 15 14 14</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>363 227 148 28 23 23 22 21 15 14 14 13 8 8 8 8 8 7 7 7 7 7 7 7</canonical_bands>
                <polymorphic_bands>363 227 148 28 23 23 22 21 15 15 14 14 13 8 8 8 8 7 7 7 7 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>374 336 44 41 29 29 15 15 15 15 15 15 15 14 14 14</canonical_bands>
                <polymorphic_bands>374 336 59 41 29 29 15 15 15 15 15 15 14 14 14</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>364 226 157 47 44 30 29 15 15 15 15 15 14 14</canonical_bands>
                <polymorphic_bands>364 226 157 47 45 44 29 15 15 15 15 14 14</polymorphic_bands>
            </assay>
            <assay>
                <site>GGTNACC</site>
                <isoschizomers>
                    <enzyme>BstEII</enzyme>
                    <enzyme>BstPI</enzyme>
                    <enzyme>Eco91I</enzyme>
                    <enzyme>EcoO65I</enzyme>
                    <enzyme>PspEI</enzyme>
                </isoschizomers>
                <canonical_bands>417 347 44 30 30 29 15 15 15 15 15 14 14</canonical_bands>
                <polymorphic_bands>417 347 45 44 30 29 15 15 15 15 14 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGGTCACCCAGATACAGAT</pcr_primer_p1>
		<pcr_primer_p2>TGAATCCGTGTTACCTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>CAGGTCACCCAGATACAGATCGCCCGTATCCAGGTTACCCGGCCAAGGTAACCCGAATCCAGGTCACCCAGATACAGGTCGCCCGGATCCAGGTTATCCGATCAAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTCACCCGGATCCAGGTCACCCGGATCCAGGTCACTCAGATACAGGTCACCCGGATCCAGATCACCCGGTCAAGGTCACCCGGATCCAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTAACACGGATTCA</canonical_amplicon>
		<polymorphic_amplicon>CAGGTCACCCAGATACAGATCGCCCGTATCCAGGTTACCCGGCCAAGGTAACCCGAATCCAGGTCACCCAGATACAGGTCGCCCGGATCCAGGTTATCCGATCAAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTCACCCGGATCCAGGTCACMCGGATCCAGGTCACTCAGATACAGGTCACCCGGATCCAGATCACCCGGTCAAGGTCACCCGGATCCAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTAACACGGATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25740</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>190739</contig_pos>
        <strand></strand>
        <context>TMACMCGGAT[C/T]CAGGTCACTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGGATCCAGGTCACCCGGTCAAGGTCACCCGGATCCAGGTCACCCGGAT</left_flank>
        <right_flank>CAGGTCACTCAGATACAGGTCACCCGGATCCAGATCACCCGGTCAAGGTC</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGCTACGCCTTTAAAATTCTCAGGTCCCACTTTTTTAAATTCGACAATAGTTGGTATGAAAATATTGATTTTAAAAGAAACTATGAGGTATGAAAATAACCTTACATTAAAAACAAAGAAAGTGAGTGGGAACATGACACTGGATATCGAATCGATGCGTTCTGGTGTCCAACATCCCGTTCCACACGAATTCAGAGATTTTGAAGATTCGGTGCATCCGGGAGGAAACATGAAACGACGTTCGGAGATGATGCCGTGGGGAGATTCTTCACGCGATGGCTGGAAATAGTTAAATGGGGGCAAACAGTGTTAGATATGGAACTACCAGTATATTTGCAGGTCACCCAGATACAGATCGCCCGTATCCAGGTTACCCGGCCAAGGTAACCCGAATCCAGGTCACCCAGATACAGGTCGCCCGGATCCAGGTTATCCGATCAAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTCACCCGGATCCAGGTCACCCGGATCCAGGTCACTCAGATACAGGTCACCCGGATCCAGATCACCCGGTCAAGGTCACCCGGATCCAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTAACACGGATTCAGGCCCCAGGCCCCAGGCCCCTTCTCCGGGCTCACCTCTCGGGAGCCCCGAGAAAAGGAGAACTGATTATTCCTTTGTTTCTCTCTTCTTTTATATTACTCTCCCAGAGGTCAATGGTTTCTAAACCAAATCACGTAGTTGTTTTTTTCTAGAATTTTAAAAATTTCTTTCGAAGCATTTTTTGCAACGGGGTTTCTTTTTTTTTAAATTTTTTTTTCATCGCGTTTGAATAAACTGGAATTTTCATTTTTGAAATCTGTGAAATTCCTTAAAAAGATCGTTCCTTTGAGCACCGATCTATAAAACTTGAGAAAGCGGAATTCAATTAATTCTGAGGTTTAAAAATGTCTGAATTCCTCGAGTTTTATGTTAAAAGGGTCGGGGGACATGAAAAAA</canonical>
            <polymorphic>AAAGCTACGCCTTTAAAATTCTCAGGTCCCACTTTTTTAAATTCGACAATAGTTGGTATGAAAATATTGATTTTAAAAGAAACTATGAGGTATGAAAATAACCTTACATTAAAAACAAAGAAAGTGAGTGGGAACATGACACTGGATATCGAATCGATGCGTTCTGGTGTCCAACATCCCGTTCCACACGAATTCAGAGATTTTGAAGATTCGGTGCATCCGGGAGGAAACATGAAACGACGTTCGGAGATGATGCCGTGGGGAGATTCTTCACGCGATGGCTGGAAATAGTTAAATGGGGGCAAACAGTGTTAGATATGGAACTACCAGTATATTTGCAGGTCACCCAGATACAGATCGCCCGTATCCAGGTTACCCGGCCAAGGTAACCCGAATCCAGGTCACCCAGATACAGGTCGCCCGGATCCAGGTTATCCGATCAAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTCACCCGGATCCAGGTCACCCGGATYCAGGTCACTCAGATACAGGTCACCCGGATCCAGATCACCCGGTCAAGGTCACCCGGATCCAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTAACACGGATTCAGGCCCCAGGCCCCAGGCCCCTTCTCCGGGCTCACCTCTCGGGAGCCCCGAGAAAAGGAGAACTGATTATTCCTTTGTTTCTCTCTTCTTTTATATTACTCTCCCAGAGGTCAATGGTTTCTAAACCAAATCACGTAGTTGTTTTTTTCTAGAATTTTAAAAATTTCTTTCGAAGCATTTTTTGCAACGGGGTTTCTTTTTTTTTAAATTTTTTTTTCATCGCGTTTGAATAAACTGGAATTTTCATTTTTGAAATCTGTGAAATTCCTTAAAAAGATCGTTCCTTTGAGCACCGATCTATAAAACTTGAGAAAGCGGAATTCAATTAATTCTGAGGTTTAAAAATGTCTGAATTCCTCGAGTTTTATGTTAAAAGGGTCGGGGGACATGAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGATCC</site>
                <isoschizomers>
                    <enzyme>BamHI</enzyme>
                </isoschizomers>
                <canonical_bands>430 423 30 29 29 29 15 15</canonical_bands>
                <polymorphic_bands>430 423 45 29 29 29 15</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>355 309 102 68 30 29 23 19 15 15 15 14 6</canonical_bands>
                <polymorphic_bands>355 309 102 68 45 29 23 19 15 15 14 6</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>369 221 148 28 23 23 22 21 15 14 14 13 8 8 8 8 8 7 7 7 7 7 7 7</canonical_bands>
                <polymorphic_bands>369 221 148 30 28 23 22 21 15 14 14 13 8 8 8 8 8 7 7 7 7 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>398 352 36 30 29 29 29 27 26 15 15 7 7</canonical_bands>
                <polymorphic_bands>398 352 45 36 29 29 29 27 26 15 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>382 369 59 36 30 29 29 29 15 15 7</canonical_bands>
                <polymorphic_bands>382 369 74 36 30 29 29 29 15 7</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>430 423 30 29 29 29 15 15</canonical_bands>
                <polymorphic_bands>430 423 45 29 29 29 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGGTCACCCAGATACAGAT</pcr_primer_p1>
		<pcr_primer_p2>TGAATCCGTGTTACCTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>CAGGTCACCCAGATACAGATCGCCCGTATCCAGGTTACCCGGCCAAGGTAACCCGAATCCAGGTCACCCAGATACAGGTCGCCCGGATCCAGGTTATCCGATCAAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTCACCCGGATCCAGGTCACCCGGATCCAGGTCACTCAGATACAGGTCACCCGGATCCAGATCACCCGGTCAAGGTCACCCGGATCCAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTAACACGGATTCA</canonical_amplicon>
		<polymorphic_amplicon>CAGGTCACCCAGATACAGATCGCCCGTATCCAGGTTACCCGGCCAAGGTAACCCGAATCCAGGTCACCCAGATACAGGTCGCCCGGATCCAGGTTATCCGATCAAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTCACCCGGATCCAGGTCACCCGGATYCAGGTCACTCAGATACAGGTCACCCGGATCCAGATCACCCGGTCAAGGTCACCCGGATCCAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTAACACGGATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25741</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>191048</contig_pos>
        <strand></strand>
        <context>TCTTTTTTTT[T/A]AAATTTTTtt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTTAAAAATTTCTTTCGAAGCATTTTTTGCAACGGGGTTTCTTTTTTTT</left_flank>
        <right_flank>AAATTTTTTTTTCATCGCGTTTGAATAAACTGGAATTTTCATTTTTGAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTAGATATGGAACTACCAGTATATTTGCAGGTCACCCAGATACAGATCGCCCGTATCCAGGTTACCCGGCCAAGGTAACCCGAATCCAGGTCACCCAGATACAGGTCGCCCGGATCCAGGTTATCCGATCAAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTCACCCGGATCCAGGTCACCCGGATCCAGGTCACTCAGATACAGGTCACCCGGATCCAGATCACCCGGTCAAGGTCACCCGGATCCAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTAACACGGATTCAGGCCCCAGGCCCCAGGCCCCTTCTCCGGGCTCACCTCTCGGGAGCCCCGAGAAAAGGAGAACTGATTATTCCTTTGTTTCTCTCTTCTTTTATATTACTCTCCCAGAGGTCAATGGTTTCTAAACCAAATCACGTAGTTGTTTTTTTCTAGAATTTTAAAAATTTCTTTCGAAGCATTTTTTGCAACGGGGTTTCTTTTTTTTTAAATTTTTTTTTCATCGCGTTTGAATAAACTGGAATTTTCATTTTTGAAATCTGTGAAATTCCTTAAAAAGATCGTTCCTTTGAGCACCGATCTATAAAACTTGAGAAAGCGGAATTCAATTAATTCTGAGGTTTAAAAATGTCTGAATTCCTCGAGTTTTATGTTAAAAGGGTCGGGGGACATGAAAAAAATGTTCTCGAAAATCCGTTCATATCAGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCGAAGAGAAAGCGGCCGCCCGATTGCATACAAAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCTTCAAAAATCCTCCGAAAACGCTCCTGTTTCCCCACCTTTAAAGTAGATCATACTTGTGATGGTTATTCAGAATTAAATAATCTGTCATTTGAACATTTTTCTT</canonical>
            <polymorphic>TGTTAGATATGGAACTACCAGTATATTTGCAGGTCACCCAGATACAGATCGCCCGTATCCAGGTTACCCGGCCAAGGTAACCCGAATCCAGGTCACCCAGATACAGGTCGCCCGGATCCAGGTTATCCGATCAAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTCACCCGGATCCAGGTCACCCGGATCCAGGTCACTCAGATACAGGTCACCCGGATCCAGATCACCCGGTCAAGGTCACCCGGATCCAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTAACACGGATTCAGGCCCCAGGCCCCAGGCCCCTTCTCCGGGCTCACCTCTCGGGAGCCCCGAGAAAAGGAGAACTGATTATTCCTTTGTTTCTCTCTTCTTTTATATTACTCTCCCAGAGGTCAATGGTTTCTAAACCAAATCACGTAGTTGTTTTTTTCTAGAATTTTAAAAATTTCTTTCGAAGCATTTTTTGCAACGGGGTTTCTTTTTTTTWAAATTTTTTTTTCATCGCGTTTGAATAAACTGGAATTTTCATTTTTGAAATCTGTGAAATTCCTTAAAAAGATCGTTCCTTTGAGCACCGATCTATAAAACTTGAGAAAGCGGAATTCAATTAATTCTGAGGTTTAAAAATGTCTGAATTCCTCGAGTTTTATGTTAAAAGGGTCGGGGGACATGAAAAAAATGTTCTCGAAAATCCGTTCATATCAGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCGAAGAGAAAGCGGCCGCCCGATTGCATACAAAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCTTCAAAAATCCTCCGAAAACGCTCCTGTTTCCCCACCTTTAAAGTAGATCATACTTGTGATGGTTATTCAGAATTAAATAATCTGTCATTTGAACATTTTTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>453 301 135 64 47</canonical_bands>
                <polymorphic_bands>453 301 182 64</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>452 191 79 65 57 47 35 31 30 13</canonical_bands>
                <polymorphic_bands>452 191 112 79 57 35 31 30 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCCTTTGTTTCTCTCTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>CCGCTTTCTCAAGTTTTATAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCCTTTGTTTCTCTCTTCTTTTATATTACTCTCCCAGAGGTCAATGGTTTCTAAACCAAATCACGTAGTTGTTTTTTTCTAGAATTTTAAAAATTTCTTTCGAAGCATTTTTTGCAACGGGGTTTCTTTTTTTTTAAATTTTTTTTTCATCGCGTTTGAATAAACTGGAATTTTCATTTTTGAAATCTGTGAAATTCCTTAAAAAGATCGTTCCTTTGAGCACCGATCTATAAAACTTGAGAAAGCGG</canonical_amplicon>
		<polymorphic_amplicon>ATTCCTTTGTTTCTCTCTTCTTTTATATTACTCTCCCAGAGGTCAATGGTTTCTAAACCAAATCACGTAGTTGTTTTTTTCTAGAATTTTAAAAATTTCTTTCGAAGCATTTTTTGCAACGGGGTTTCTTTTTTTTWAAATTTTTTTTTCATCGCGTTTGAATAAACTGGAATTTTCATTTTTGAAATCTGTGAAATTCCTTAAAAAGATCGTTCCTTTGAGCACCGATCTATAAAACTTGAGAAAGCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25742</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>191227</contig_pos>
        <strand></strand>
        <context>AAGGGTCGGG[G/A]GACATGAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAGGTTTAAAAATGTCTGAATTCCTCGAGTTTTATGTTAAAAGGGTCGGG</left_flank>
        <right_flank>GACATGAAAAAAATGTTCTCGAAAATCCGTTCATATCAGCCCCTCGAGGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCACCCGGATCCAGGTCACTCAGATACAGGTCACCCGGATCCAGATCACCCGGTCAAGGTCACCCGGATCCAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTAACACGGATTCAGGCCCCAGGCCCCAGGCCCCTTCTCCGGGCTCACCTCTCGGGAGCCCCGAGAAAAGGAGAACTGATTATTCCTTTGTTTCTCTCTTCTTTTATATTACTCTCCCAGAGGTCAATGGTTTCTAAACCAAATCACGTAGTTGTTTTTTTCTAGAATTTTAAAAATTTCTTTCGAAGCATTTTTTGCAACGGGGTTTCTTTTTTTTTAAATTTTTTTTTCATCGCGTTTGAATAAACTGGAATTTTCATTTTTGAAATCTGTGAAATTCCTTAAAAAGATCGTTCCTTTGAGCACCGATCTATAAAACTTGAGAAAGCGGAATTCAATTAATTCTGAGGTTTAAAAATGTCTGAATTCCTCGAGTTTTATGTTAAAAGGGTCGGGGGACATGAAAAAAATGTTCTCGAAAATCCGTTCATATCAGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCGAAGAGAAAGCGGCCGCCCGATTGCATACAAAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCTTCAAAAATCCTCCGAAAACGCTCCTGTTTCCCCACCTTTAAAGTAGATCATACTTGTGATGGTTATTCAGAATTAAATAATCTGTCATTTGAACATTTTTCTTTTTTTTCAAAACCAAAAATTACTGTTTCCATTGTAAGCCTTTATTCTAATTCAAATTGTGTGTGCGCTCTGAGTGAGACACTGTTGTTATTTGGGTAGAGAAAATCTTTAGGTGGGATCGGAGGACAGTTTACACAGTTTCAAGTGTTTTGTTTGGTTTCTTGGAGTAACATATACTGT</canonical>
            <polymorphic>GTCACCCGGATCCAGGTCACTCAGATACAGGTCACCCGGATCCAGATCACCCGGTCAAGGTCACCCGGATCCAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTAACACGGATTCAGGCCCCAGGCCCCAGGCCCCTTCTCCGGGCTCACCTCTCGGGAGCCCCGAGAAAAGGAGAACTGATTATTCCTTTGTTTCTCTCTTCTTTTATATTACTCTCCCAGAGGTCAATGGTTTCTAAACCAAATCACGTAGTTGTTTTTTTCTAGAATTTTAAAAATTTCTTTCGAAGCATTTTTTGCAACGGGGTTTCTTTTTTTTTAAATTTTTTTTTCATCGCGTTTGAATAAACTGGAATTTTCATTTTTGAAATCTGTGAAATTCCTTAAAAAGATCGTTCCTTTGAGCACCGATCTATAAAACTTGAGAAAGCGGAATTCAATTAATTCTGAGGTTTAAAAATGTCTGAATTCCTCGAGTTTTATGTTAAAAGGGTCGGGRGACATGAAAAAAATGTTCTCGAAAATCCGTTCATATCAGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCGAAGAGAAAGCGGCCGCCCGATTGCATACAAAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCTTCAAAAATCCTCCGAAAACGCTCCTGTTTCCCCACCTTTAAAGTAGATCATACTTGTGATGGTTATTCAGAATTAAATAATCTGTCATTTGAACATTTTTCTTTTTTTTCAAAACCAAAAATTACTGTTTCCATTGTAAGCCTTTATTCTAATTCAAATTGTGTGTGCGCTCTGAGTGAGACACTGTTGTTATTTGGGTAGAGAAAATCTTTAGGTGGGATCGGAGGACAGTTTACACAGTTTCAAGTGTTTTGTTTGGTTTCTTGGAGTAACATATACTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAGGTTTAAAAATGTCTGAAT</pcr_primer_p1>
		<pcr_primer_p2>TGTACAACGCTTAATGTCACTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTGAGGTTTAAAAATGTCTGAATTCCTCGAGTTTTATGTTAAAAGGGTCGGGGGACATGAAAAAAATGTTCTCGAAAATCCGTTCATATCAGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCGAAGAGAAAGCGGCCGCCCGATTGCATACAAAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACA</canonical_amplicon>
		<polymorphic_amplicon>CTGAGGTTTAAAAATGTCTGAATTCCTCGAGTTTTATGTTAAAAGGGTCGGGRGACATGAAAAAAATGTTCTCGAAAATCCGTTCATATCAGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCGAAGAGAAAGCGGCCGCCCGATTGCATACAAAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25743</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>191278</contig_pos>
        <strand></strand>
        <context>ccctcgagga[G/A]ttgaacttgT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GACATGAAAAAAATGTTCTCGAAAATCCGTTCATATCAGCCCCTCGAGGA</left_flank>
        <right_flank>TTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGTCAAGGTCACCCGGATCCAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTAACACGGATTCAGGCCCCAGGCCCCAGGCCCCTTCTCCGGGCTCACCTCTCGGGAGCCCCGAGAAAAGGAGAACTGATTATTCCTTTGTTTCTCTCTTCTTTTATATTACTCTCCCAGAGGTCAATGGTTTCTAAACCAAATCACGTAGTTGTTTTTTTCTAGAATTTTAAAAATTTCTTTCGAAGCATTTTTTGCAACGGGGTTTCTTTTTTTTTAAATTTTTTTTTCATCGCGTTTGAATAAACTGGAATTTTCATTTTTGAAATCTGTGAAATTCCTTAAAAAGATCGTTCCTTTGAGCACCGATCTATAAAACTTGAGAAAGCGGAATTCAATTAATTCTGAGGTTTAAAAATGTCTGAATTCCTCGAGTTTTATGTTAAAAGGGTCGGGGGACATGAAAAAAATGTTCTCGAAAATCCGTTCATATCAGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCGAAGAGAAAGCGGCCGCCCGATTGCATACAAAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCTTCAAAAATCCTCCGAAAACGCTCCTGTTTCCCCACCTTTAAAGTAGATCATACTTGTGATGGTTATTCAGAATTAAATAATCTGTCATTTGAACATTTTTCTTTTTTTTCAAAACCAAAAATTACTGTTTCCATTGTAAGCCTTTATTCTAATTCAAATTGTGTGTGCGCTCTGAGTGAGACACTGTTGTTATTTGGGTAGAGAAAATCTTTAGGTGGGATCGGAGGACAGTTTACACAGTTTCAAGTGTTTTGTTTGGTTTCTTGGAGTAACATATACTGTTACACATAGTGATGATTCATGGACGAATGTGACTCAACCGATTTGCAGACA</canonical>
            <polymorphic>CGGTCAAGGTCACCCGGATCCAGGTCACCCGGATCCAGGTCACCCGGTCAAGGTAACACGGATTCAGGCCCCAGGCCCCAGGCCCCTTCTCCGGGCTCACCTCTCGGGAGCCCCGAGAAAAGGAGAACTGATTATTCCTTTGTTTCTCTCTTCTTTTATATTACTCTCCCAGAGGTCAATGGTTTCTAAACCAAATCACGTAGTTGTTTTTTTCTAGAATTTTAAAAATTTCTTTCGAAGCATTTTTTGCAACGGGGTTTCTTTTTTTTTAAATTTTTTTTTCATCGCGTTTGAATAAACTGGAATTTTCATTTTTGAAATCTGTGAAATTCCTTAAAAAGATCGTTCCTTTGAGCACCGATCTATAAAACTTGAGAAAGCGGAATTCAATTAATTCTGAGGTTTAAAAATGTCTGAATTCCTCGAGTTTTATGTTAAAAGGGTCGGGGGACATGAAAAAAATGTTCTCGAAAATCCGTTCATATCAGCCCCTCGAGGARTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCGAAGAGAAAGCGGCCGCCCGATTGCATACAAAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCTTCAAAAATCCTCCGAAAACGCTCCTGTTTCCCCACCTTTAAAGTAGATCATACTTGTGATGGTTATTCAGAATTAAATAATCTGTCATTTGAACATTTTTCTTTTTTTTCAAAACCAAAAATTACTGTTTCCATTGTAAGCCTTTATTCTAATTCAAATTGTGTGTGCGCTCTGAGTGAGACACTGTTGTTATTTGGGTAGAGAAAATCTTTAGGTGGGATCGGAGGACAGTTTACACAGTTTCAAGTGTTTTGTTTGGTTTCTTGGAGTAACATATACTGTTACACATAGTGATGATTCATGGACGAATGTGACTCAACCGATTTGCAGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATTCCTCGAGTTTTATGTTA</pcr_primer_p1>
		<pcr_primer_p2>AGAGTATGCATTCTACCGTGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAATTCCTCGAGTTTTATGTTAAAAGGGTCGGGGGACATGAAAAAAATGTTCTCGAAAATCCGTTCATATCAGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCGAAGAGAAAGCGGCCGCCCGATTGCATACAAAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCT</canonical_amplicon>
		<polymorphic_amplicon>TGAATTCCTCGAGTTTTATGTTAAAAGGGTCGGGGGACATGAAAAAAATGTTCTCGAAAATCCGTTCATATCAGCCCCTCGAGGARTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCGAAGAGAAAGCGGCCGCCCGATTGCATACAAAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25744</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>201080</contig_pos>
        <strand>+</strand>
        <context>GTGAATGAAA[A/G]ATGTGAGAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTTTAAAAGTTCTATCAAAAAGAAATCAAAGCCGAAAAGGTGAATGAAA</left_flank>
        <right_flank>ATGTGAGAGAGGGACATGCGTGGAAAAAAAAAATACAAGATGAGATCTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGAGTTTTTAAAAAATATTTTTTGATCAAACAGACAAACAATCCAAAAAGCACAAAAAAATATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATAACAAAATTTTTGCTACCGGGCCTTAAAATTTTCCTCAGGCCCGGCCCGGCCCGGGCCGAGCCCGTGCTTTGGCGAGCCGGCCTGGAATTTTACAAATATGAAATTAAGCACAATTGACTTTTCTACCACGGAATAAAATTAAACACATACATGAAACAGATTTTGCAATTTTGAGCATTATTGGAATCATTGAAAAAATGAGAGTAATTGGCCACCTAATCAAGAACATTTTTTGGCTAATTTCGAGATGTTCAATGTAATGGCTGCAATAATAACAAGATTCAGTCTTCAGTTTCAAACGCGTTAATTTTGAAGTAACATACTTTCAAGATGATATGAAACATACTTTAAAAGTTCTATCAAAAAGAAATCAAAGCCGAAAAGGTGAATGAAAGATGTGAGAGAGGGACATGCGTGGAAAAAAAAAATACAAGATGAGATCTTCTCCATGATTAATTGATGAGTATATCTTCCGACGTCTTCTGAAGACACACACACACCGTCCAACCTCATTCCCGCTCTTTTTCCATCTATCCAAATAATGAGAGAAAAGGGGAAAAAGAAAAAGTCAGGCACATTTTCAGAGAGACACATCCTCTTATTTTCATACGGCACAATTACACATCTAGGACAATTATGTGTAAAAAGGGTAAGCGTACGGAGGGGGAATGTTCCGGAAGGTGTCAAGGAATATTTTGTTTAGAGCTGCTATTGGGACAAGCATATGGGACATACGCACTCTTTTTTTTATAAGCTCCAGGGACTTTGGTGGAAAAAAGATGAAGAGGAGGAAAAAAGGAACAGGGAAGAGAGAAAAATGATATTCACTTTTGAATAGAACGAGTAGAGAGAAAAGGATGTGTCGTAGACAACGAACATATGGGAGAATGACGTT</canonical>
            <polymorphic>TTTCGAGTTTTTAAAAAATATTTTTTGATCAAACAGACAAACAATCCAAAAAGCACAAAAAAATATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATAACAAAATTTTTGCTACCGGGCCTTAAAATTTTCCTCAGGCCCGGCCCGGCCCGGGCCGAGCCCGTGCTTTGGCGAGCCGGCCTGGAATTTTACAAATATGAAATTAAGCACAATTGACTTTTCTACCACGGAATAAAATTAAACACATACATGAAACAGATTTTGCAATTTTGAGCATTATTGGAATCATTGAAAAAATGAGAGTAATTGGCCACCTAATCAAGAACATTTTTTGGCTAATTTCGAGATGTTCAATGTAATGGCTGCAATAATAACAAGATTCAGTCTTCAGTTTCAAACGCGTTAATTTTGAAGTAACATACTTTCAAGATGATATGAAACATACTTTAAAAGTTCTATCAAAAAGAAATCAAAGCCGAAAAGGTGAATGAAARATGTGAGAGAGGGACATGCGTGGAAAAAAAAAATACAAGATGAGATCTTCTCCATGATTAATTGATGAGTATATCTTCCGACGTCTTCTGAAGACACACACACACCGTCCAACCTCATTCCCGCTCTTTTTCCATCTATCCAAATAATGAGAGAAAAGGGGAAAAAGAAAAAGTCAGGCACATTTTCAGAGAGACACATCCTCTTATTTTCATACGGCACAATTACACATCTAGGACAATTATGTGTAAAAAGGGTAAGCGTACGGAGGGGGAATGTTCCGGAAGGTGTCAAGGAATATTTTGTTTAGAGCTGCTATTGGGACAAGCATATGGGACATACGCACTCTTTTTTTTATAAGCTCCAGGGACTTTGGTGGAAAAAAGATGAAGAGGAGGAAAAAAGGAACAGGGAAGAGAGAAAAATGATATTCACTTTTGAATAGAACGAGTAGAGAGAAAAGGATGTGTCGTAGACAACGAACATATGGGAGAATGACGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTCGAGATGTTCAATGTAAT</pcr_primer_p1>
		<pcr_primer_p2>CAGAAGACGTCGGAAGATATAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATTTCGAGATGTTCAATGTAATGGCTGCAATAATAACAAGATTCAGTCTTCAGTTTCAAACGCGTTAATTTTGAAGTAACATACTTTCAAGATGATATGAAACATACTTTAAAAGTTCTATCAAAAAGAAATCAAAGCCGAAAAGGTGAATGAAAGATGTGAGAGAGGGACATGCGTGGAAAAAAAAAATACAAGATGAGATCTTCTCCATGATTAATTGATGAGTATATCTTCCGACGTCTTCTG</canonical_amplicon>
		<polymorphic_amplicon>AATTTCGAGATGTTCAATGTAATGGCTGCAATAATAACAAGATTCAGTCTTCAGTTTCAAACGCGTTAATTTTGAAGTAACATACTTTCAAGATGATATGAAACATACTTTAAAAGTTCTATCAAAAAGAAATCAAAGCCGAAAAGGTGAATGAAARATGTGAGAGAGGGACATGCGTGGAAAAAAAAAATACAAGATGAGATCTTCTCCATGATTAATTGATGAGTATATCTTCCGACGTCTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25745</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>349602</contig_pos>
        <strand>+</strand>
        <context>CCTGGAACTA[A/C]AATTTTTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCGACTCAATCAAAATTATAGTTTTGATTTTCTCGGAATTCCTGGAACTA</left_flank>
        <right_flank>AATTTTTTCTGCTTTCAGGCAATTGTTTCGCGAATTTTCGTTCCCAAAAA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATCAAAGAACGGCGATTTATTGTTAACTGATCCAAATTTCTTGAGTCATCACTGTATTCAATAAATTGACGTTGTCCATTTCTCAGAAAAATTTCCGATTTGATATGGTGATCACTTTCTACAGTAATCCGATATTTTTGAATTTTCGGATCCGGTTTCACTGCATCCATACACTTACGAATTCCCGAAGACACGCGACGCAGGTTTTGACTGAAAATGTGAAAAGATAATTATTTGAAAGTAATTAAAAGATTGGACAAAAAACTCACATGTCAAAACATTCTAAAGTCTGAGCGATTTGTTCCATCAAATCTCGGGTTTTCAGAACTTTCAAATATGGAGGTTCTGGAAGTTTCTGCAACATTTCAAAAAATTTAAAGTTGGAAAGCTGGAGGGGGAGGAACTCGGTTATAGCACCCCATCAGGTTAGGTCTCGTTCGATTTCATCGACTCAATCAAAATTATAGTTTTGATTTTCTCGGAATTCCTGGAACTAAAATTTTTTCTGCTTTCAGGCAATTGTTTCGCGAATTTTCGTTCCCAAAAATTTTACCAATTTGAACAAGTCTGAATACAGGTTTTATGGTAGTTTCGAAATGTTCATCTCAATCATTTTCCAAATTTTGAATTTCGGAAATTTGTTGAATTAAAAAAGTTTTTGTTTTCAGATTGCGAAAAAACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATAATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAAT</canonical>
            <polymorphic>AAAATCAAAGAACGGCGATTTATTGTTAACTGATCCAAATTTCTTGAGTCATCACTGTATTCAATAAATTGACGTTGTCCATTTCTCAGAAAAATTTCCGATTTGATATGGTGATCACTTTCTACAGTAATCCGATATTTTTGAATTTTCGGATCCGGTTTCACTGCATCCATACACTTACGAATTCCCGAAGACACGCGACGCAGGTTTTGACTGAAAATGTGAAAAGATAATTATTTGAAAGTAATTAAAAGATTGGACAAAAAACTCACATGTCAAAACATTCTAAAGTCTGAGCGATTTGTTCCATCAAATCTCGGGTTTTCAGAACTTTCAAATATGGAGGTTCTGGAAGTTTCTGCAACATTTCAAAAAATTTAAAGTTGGAAAGCTGGAGGGGGAGGAACTCGGTTATAGCACCCCATCAGGTTAGGTCTCGTTCGATTTCATCGACTCAATCAAAATTATAGTTTTGATTTTCTCGGAATTCCTGGAACTAMAATTTTTTCTGCTTTCAGGCAATTGTTTCGCGAATTTTCGTTCCCAAAAATTTTACCAATTTGAACAAGTCTGAATACAGGTTTTATGGTAGTTTCGAAATGTTCATCTCAATCATTTTCCAAATTTTGAATTTCGGAAATTTGTTGAATTAAAAAAGTTTTTGTTTTCAGATTGCGAAAAAACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATAATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>267 192 111 74 71 55 51 39 37 32 24 16 15 9 7</canonical_bands>
                <polymorphic_bands>267 192 111 74 71 55 51 47 39 37 24 16 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGTTTCTGCAACATTTCAA</pcr_primer_p1>
		<pcr_primer_p2>ATTTCGAAACTACCATAAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGTTTCTGCAACATTTCAAAAAATTTAAAGTTGGAAAGCTGGAGGGGGAGGAACTCGGTTATAGCACCCCATCAGGTTAGGTCTCGTTCGATTTCATCGACTCAATCAAAATTATAGTTTTGATTTTCTCGGAATTCCTGGAACTAAAATTTTTTCTGCTTTCAGGCAATTGTTTCGCGAATTTTCGTTCCCAAAAATTTTACCAATTTGAACAAGTCTGAATACAGGTTTTATGGTAGTTTCGAAAT</canonical_amplicon>
		<polymorphic_amplicon>GAAGTTTCTGCAACATTTCAAAAAATTTAAAGTTGGAAAGCTGGAGGGGGAGGAACTCGGTTATAGCACCCCATCAGGTTAGGTCTCGTTCGATTTCATCGACTCAATCAAAATTATAGTTTTGATTTTCTCGGAATTCCTGGAACTAMAATTTTTTCTGCTTTCAGGCAATTGTTTCGCGAATTTTCGTTCCCAAAAATTTTACCAATTTGAACAAGTCTGAATACAGGTTTTATGGTAGTTTCGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25746</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>349677</contig_pos>
        <strand>+</strand>
        <context>ACAAGTCTGA[A/C]TACAGGTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTTCGCGAATTTTCGTTCCCAAAAATTTTACCAATTTGAACAAGTCTGA</left_flank>
        <right_flank>TACAGGTTTTATGGTAGTTTCGAAATGTTCATCTCAATCATTTTCCAAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCCATTTCTCAGAAAAATTTCCGATTTGATATGGTGATCACTTTCTACAGTAATCCGATATTTTTGAATTTTCGGATCCGGTTTCACTGCATCCATACACTTACGAATTCCCGAAGACACGCGACGCAGGTTTTGACTGAAAATGTGAAAAGATAATTATTTGAAAGTAATTAAAAGATTGGACAAAAAACTCACATGTCAAAACATTCTAAAGTCTGAGCGATTTGTTCCATCAAATCTCGGGTTTTCAGAACTTTCAAATATGGAGGTTCTGGAAGTTTCTGCAACATTTCAAAAAATTTAAAGTTGGAAAGCTGGAGGGGGAGGAACTCGGTTATAGCACCCCATCAGGTTAGGTCTCGTTCGATTTCATCGACTCAATCAAAATTATAGTTTTGATTTTCTCGGAATTCCTGGAACTAAAATTTTTTCTGCTTTCAGGCAATTGTTTCGCGAATTTTCGTTCCCAAAAATTTTACCAATTTGAACAAGTCTGAATACAGGTTTTATGGTAGTTTCGAAATGTTCATCTCAATCATTTTCCAAATTTTGAATTTCGGAAATTTGTTGAATTAAAAAAGTTTTTGTTTTCAGATTGCGAAAAAACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATAATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAA</canonical>
            <polymorphic>TGTCCATTTCTCAGAAAAATTTCCGATTTGATATGGTGATCACTTTCTACAGTAATCCGATATTTTTGAATTTTCGGATCCGGTTTCACTGCATCCATACACTTACGAATTCCCGAAGACACGCGACGCAGGTTTTGACTGAAAATGTGAAAAGATAATTATTTGAAAGTAATTAAAAGATTGGACAAAAAACTCACATGTCAAAACATTCTAAAGTCTGAGCGATTTGTTCCATCAAATCTCGGGTTTTCAGAACTTTCAAATATGGAGGTTCTGGAAGTTTCTGCAACATTTCAAAAAATTTAAAGTTGGAAAGCTGGAGGGGGAGGAACTCGGTTATAGCACCCCATCAGGTTAGGTCTCGTTCGATTTCATCGACTCAATCAAAATTATAGTTTTGATTTTCTCGGAATTCCTGGAACTAAAATTTTTTCTGCTTTCAGGCAATTGTTTCGCGAATTTTCGTTCCCAAAAATTTTACCAATTTGAACAAGTCTGAMTACAGGTTTTATGGTAGTTTCGAAATGTTCATCTCAATCATTTTCCAAATTTTGAATTTCGGAAATTTGTTGAATTAAAAAAGTTTTTGTTTTCAGATTGCGAAAAAACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATAATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATCGACTCAATCAAAATTATAG</pcr_primer_p1>
		<pcr_primer_p2>GAAGAAGTGAGTTGAATGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TCATCGACTCAATCAAAATTATAGTTTTGATTTTCTCGGAATTCCTGGAACTAAAATTTTTTCTGCTTTCAGGCAATTGTTTCGCGAATTTTCGTTCCCAAAAATTTTACCAATTTGAACAAGTCTGAATACAGGTTTTATGGTAGTTTCGAAATGTTCATCTCAATCATTTTCCAAATTTTGAATTTCGGAAATTTGTTGAATTAAAAAAGTTTTTGTTTTCAGATTGCGAAAAAACATTCAACTCACTTCTTC</canonical_amplicon>
		<polymorphic_amplicon>TCATCGACTCAATCAAAATTATAGTTTTGATTTTCTCGGAATTCCTGGAACTAAAATTTTTTCTGCTTTCAGGCAATTGTTTCGCGAATTTTCGTTCCCAAAAATTTTACCAATTTGAACAAGTCTGAMTACAGGTTTTATGGTAGTTTCGAAATGTTCATCTCAATCATTTTCCAAATTTTGAATTTCGGAAATTTGTTGAATTAAAAAAGTTTTTGTTTTCAGATTGCGAAAAAACATTCAACTCACTTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25747</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>349861</contig_pos>
        <strand>+</strand>
        <context>AGAAAATAAC[A/C]TWAKCAGCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAAC</left_flank>
        <right_flank>TAATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAAAAACTCACATGTCAAAACATTCTAAAGTCTGAGCGATTTGTTCCATCAAATCTCGGGTTTTCAGAACTTTCAAATATGGAGGTTCTGGAAGTTTCTGCAACATTTCAAAAAATTTAAAGTTGGAAAGCTGGAGGGGGAGGAACTCGGTTATAGCACCCCATCAGGTTAGGTCTCGTTCGATTTCATCGACTCAATCAAAATTATAGTTTTGATTTTCTCGGAATTCCTGGAACTAAAATTTTTTCTGCTTTCAGGCAATTGTTTCGCGAATTTTCGTTCCCAAAAATTTTACCAATTTGAACAAGTCTGAATACAGGTTTTATGGTAGTTTCGAAATGTTCATCTCAATCATTTTCCAAATTTTGAATTTCGGAAATTTGTTGAATTAAAAAAGTTTTTGTTTTCAGATTGCGAAAAAACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATAATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTT</canonical>
            <polymorphic>ACAAAAAACTCACATGTCAAAACATTCTAAAGTCTGAGCGATTTGTTCCATCAAATCTCGGGTTTTCAGAACTTTCAAATATGGAGGTTCTGGAAGTTTCTGCAACATTTCAAAAAATTTAAAGTTGGAAAGCTGGAGGGGGAGGAACTCGGTTATAGCACCCCATCAGGTTAGGTCTCGTTCGATTTCATCGACTCAATCAAAATTATAGTTTTGATTTTCTCGGAATTCCTGGAACTAAAATTTTTTCTGCTTTCAGGCAATTGTTTCGCGAATTTTCGTTCCCAAAAATTTTACCAATTTGAACAAGTCTGAATACAGGTTTTATGGTAGTTTCGAAATGTTCATCTCAATCATTTTCCAAATTTTGAATTTCGGAAATTTGTTGAATTAAAAAAGTTTTTGTTTTCAGATTGCGAAAAAACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACMTAATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACATTCAACTCACTTCTTCTTG</pcr_primer_p1>
		<pcr_primer_p2>GAATCTGTGAAAACTGTGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATAATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTC</canonical_amplicon>
		<polymorphic_amplicon>AACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACMTAATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25748</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>349863</contig_pos>
        <strand>+</strand>
        <context>AAAATAACMT[A/T]AKCAGCATAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACAT</left_flank>
        <right_flank>ATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAACTCACATGTCAAAACATTCTAAAGTCTGAGCGATTTGTTCCATCAAATCTCGGGTTTTCAGAACTTTCAAATATGGAGGTTCTGGAAGTTTCTGCAACATTTCAAAAAATTTAAAGTTGGAAAGCTGGAGGGGGAGGAACTCGGTTATAGCACCCCATCAGGTTAGGTCTCGTTCGATTTCATCGACTCAATCAAAATTATAGTTTTGATTTTCTCGGAATTCCTGGAACTAAAATTTTTTCTGCTTTCAGGCAATTGTTTCGCGAATTTTCGTTCCCAAAAATTTTACCAATTTGAACAAGTCTGAATACAGGTTTTATGGTAGTTTCGAAATGTTCATCTCAATCATTTTCCAAATTTTGAATTTCGGAAATTTGTTGAATTAAAAAAGTTTTTGTTTTCAGATTGCGAAAAAACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATAATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTTTG</canonical>
            <polymorphic>AAAAAACTCACATGTCAAAACATTCTAAAGTCTGAGCGATTTGTTCCATCAAATCTCGGGTTTTCAGAACTTTCAAATATGGAGGTTCTGGAAGTTTCTGCAACATTTCAAAAAATTTAAAGTTGGAAAGCTGGAGGGGGAGGAACTCGGTTATAGCACCCCATCAGGTTAGGTCTCGTTCGATTTCATCGACTCAATCAAAATTATAGTTTTGATTTTCTCGGAATTCCTGGAACTAAAATTTTTTCTGCTTTCAGGCAATTGTTTCGCGAATTTTCGTTCCCAAAAATTTTACCAATTTGAACAAGTCTGAATACAGGTTTTATGGTAGTTTCGAAATGTTCATCTCAATCATTTTCCAAATTTTGAATTTCGGAAATTTGTTGAATTAAAAAAGTTTTTGTTTTCAGATTGCGAAAAAACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATWATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACATTCAACTCACTTCTTCTTG</pcr_primer_p1>
		<pcr_primer_p2>GAATCTGTGAAAACTGTGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATAATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTC</canonical_amplicon>
		<polymorphic_amplicon>AACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATWATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25749</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>349865</contig_pos>
        <strand>+</strand>
        <context>AATAACMTWA[G/T]CAGCATATTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATAA</left_flank>
        <right_flank>CAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACTCACATGTCAAAACATTCTAAAGTCTGAGCGATTTGTTCCATCAAATCTCGGGTTTTCAGAACTTTCAAATATGGAGGTTCTGGAAGTTTCTGCAACATTTCAAAAAATTTAAAGTTGGAAAGCTGGAGGGGGAGGAACTCGGTTATAGCACCCCATCAGGTTAGGTCTCGTTCGATTTCATCGACTCAATCAAAATTATAGTTTTGATTTTCTCGGAATTCCTGGAACTAAAATTTTTTCTGCTTTCAGGCAATTGTTTCGCGAATTTTCGTTCCCAAAAATTTTACCAATTTGAACAAGTCTGAATACAGGTTTTATGGTAGTTTCGAAATGTTCATCTCAATCATTTTCCAAATTTTGAATTTCGGAAATTTGTTGAATTAAAAAAGTTTTTGTTTTCAGATTGCGAAAAAACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATAATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTTTGAT</canonical>
            <polymorphic>AAAACTCACATGTCAAAACATTCTAAAGTCTGAGCGATTTGTTCCATCAAATCTCGGGTTTTCAGAACTTTCAAATATGGAGGTTCTGGAAGTTTCTGCAACATTTCAAAAAATTTAAAGTTGGAAAGCTGGAGGGGGAGGAACTCGGTTATAGCACCCCATCAGGTTAGGTCTCGTTCGATTTCATCGACTCAATCAAAATTATAGTTTTGATTTTCTCGGAATTCCTGGAACTAAAATTTTTTCTGCTTTCAGGCAATTGTTTCGCGAATTTTCGTTCCCAAAAATTTTACCAATTTGAACAAGTCTGAATACAGGTTTTATGGTAGTTTCGAAATGTTCATCTCAATCATTTTCCAAATTTTGAATTTCGGAAATTTGTTGAATTAAAAAAGTTTTTGTTTTCAGATTGCGAAAAAACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATAAKCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTTTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACATTCAACTCACTTCTTCTTG</pcr_primer_p1>
		<pcr_primer_p2>GAATCTGTGAAAACTGTGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATAATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTC</canonical_amplicon>
		<polymorphic_amplicon>AACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATAAKCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25750</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>349950</contig_pos>
        <strand>+</strand>
        <context>TTTGCGAAAA[C/T]GTTGAGGAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAA</left_flank>
        <right_flank>GTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGGAAGTTTCTGCAACATTTCAAAAAATTTAAAGTTGGAAAGCTGGAGGGGGAGGAACTCGGTTATAGCACCCCATCAGGTTAGGTCTCGTTCGATTTCATCGACTCAATCAAAATTATAGTTTTGATTTTCTCGGAATTCCTGGAACTAAAATTTTTTCTGCTTTCAGGCAATTGTTTCGCGAATTTTCGTTCCCAAAAATTTTACCAATTTGAACAAGTCTGAATACAGGTTTTATGGTAGTTTCGAAATGTTCATCTCAATCATTTTCCAAATTTTGAATTTCGGAAATTTGTTGAATTAAAAAAGTTTTTGTTTTCAGATTGCGAAAAAACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATAATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTTTGATTTTTCAGAACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAAC</canonical>
            <polymorphic>CTGGAAGTTTCTGCAACATTTCAAAAAATTTAAAGTTGGAAAGCTGGAGGGGGAGGAACTCGGTTATAGCACCCCATCAGGTTAGGTCTCGTTCGATTTCATCGACTCAATCAAAATTATAGTTTTGATTTTCTCGGAATTCCTGGAACTAAAATTTTTTCTGCTTTCAGGCAATTGTTTCGCGAATTTTCGTTCCCAAAAATTTTACCAATTTGAACAAGTCTGAATACAGGTTTTATGGTAGTTTCGAAATGTTCATCTCAATCATTTTCCAAATTTTGAATTTCGGAAATTTGTTGAATTAAAAAAGTTTTTGTTTTCAGATTGCGAAAAAACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATAATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAAYGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTTTGATTTTTCAGAACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>499 381 120</canonical_bands>
                <polymorphic_bands>880 120</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACATTCAACTCACTTCTTCTTG</pcr_primer_p1>
		<pcr_primer_p2>GAATCTGTGAAAACTGTGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATAATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTC</canonical_amplicon>
		<polymorphic_amplicon>AACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATAATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAAYGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25751</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>350050</contig_pos>
        <strand>+</strand>
        <context>CCTGAGAAAT[C/T]GTTGACATWA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAAT</left_flank>
        <right_flank>GTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGACTCAATCAAAATTATAGTTTTGATTTTCTCGGAATTCCTGGAACTAAAATTTTTTCTGCTTTCAGGCAATTGTTTCGCGAATTTTCGTTCCCAAAAATTTTACCAATTTGAACAAGTCTGAATACAGGTTTTATGGTAGTTTCGAAATGTTCATCTCAATCATTTTCCAAATTTTGAATTTCGGAAATTTGTTGAATTAAAAAAGTTTTTGTTTTCAGATTGCGAAAAAACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATAATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTTTGATTTTTCAGAACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAACTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGTTTT</canonical>
            <polymorphic>ATCGACTCAATCAAAATTATAGTTTTGATTTTCTCGGAATTCCTGGAACTAAAATTTTTTCTGCTTTCAGGCAATTGTTTCGCGAATTTTCGTTCCCAAAAATTTTACCAATTTGAACAAGTCTGAATACAGGTTTTATGGTAGTTTCGAAATGTTCATCTCAATCATTTTCCAAATTTTGAATTTCGGAAATTTGTTGAATTAAAAAAGTTTTTGTTTTCAGATTGCGAAAAAACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATAATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATYGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTTTGATTTTTCAGAACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAACTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGTTTCAAAATCATCTTCAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTGCGAATACCATAAACACT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATYGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25752</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>350059</contig_pos>
        <strand>+</strand>
        <context>TYGTTGACAT[A/T]AATGTCCAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACAT</left_flank>
        <right_flank>AATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAAAATTATAGTTTTGATTTTCTCGGAATTCCTGGAACTAAAATTTTTTCTGCTTTCAGGCAATTGTTTCGCGAATTTTCGTTCCCAAAAATTTTACCAATTTGAACAAGTCTGAATACAGGTTTTATGGTAGTTTCGAAATGTTCATCTCAATCATTTTCCAAATTTTGAATTTCGGAAATTTGTTGAATTAAAAAAGTTTTTGTTTTCAGATTGCGAAAAAACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATAATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTTTGATTTTTCAGAACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAACTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGTTTTATATTCCTT</canonical>
            <polymorphic>ATCAAAATTATAGTTTTGATTTTCTCGGAATTCCTGGAACTAAAATTTTTTCTGCTTTCAGGCAATTGTTTCGCGAATTTTCGTTCCCAAAAATTTTACCAATTTGAACAAGTCTGAATACAGGTTTTATGGTAGTTTCGAAATGTTCATCTCAATCATTTTCCAAATTTTGAATTTCGGAAATTTGTTGAATTAAAAAAGTTTTTGTTTTCAGATTGCGAAAAAACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATAATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACATWAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTTTGATTTTTCAGAACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAACTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGTTTTATATTCCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>306 244 193 85 85 41 33 13</canonical_bands>
                <polymorphic_bands>319 244 193 85 85 41 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGTTTCAAAATCATCTTCAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTGCGAATACCATAAACACT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACATWAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25753</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>350140</contig_pos>
        <strand>+</strand>
        <context>TTCGCAAATT[C/T]AAAATTAACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATT</left_flank>
        <right_flank>AAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTCCCAAAAATTTTACCAATTTGAACAAGTCTGAATACAGGTTTTATGGTAGTTTCGAAATGTTCATCTCAATCATTTTCCAAATTTTGAATTTCGGAAATTTGTTGAATTAAAAAAGTTTTTGTTTTCAGATTGCGAAAAAACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATAATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTTTGATTTTTCAGAACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAACTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGAAATGGAGAGGGAGAAATGA</canonical>
            <polymorphic>CGTTCCCAAAAATTTTACCAATTTGAACAAGTCTGAATACAGGTTTTATGGTAGTTTCGAAATGTTCATCTCAATCATTTTCCAAATTTTGAATTTCGGAAATTTGTTGAATTAAAAAAGTTTTTGTTTTCAGATTGCGAAAAAACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATAATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTYAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTTTGATTTTTCAGAACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAACTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGAAATGGAGAGGGAGAAATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>331 267 100 76 74 74 28 24 10 9 7</canonical_bands>
                <polymorphic_bands>331 267 102 100 76 74 24 10 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGTTCCAATAAACCAATTTTA</pcr_primer_p1>
		<pcr_primer_p2>TCAGATGATGATTTAAAGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGA</canonical_amplicon>
		<polymorphic_amplicon>TTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTYAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25754</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>350210</contig_pos>
        <strand></strand>
        <context>AAACATCGAA[A/C]MTTTCAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAA</left_flank>
        <right_flank>ATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGA</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAATCATTTTCCAAATTTTGAATTTCGGAAATTTGTTGAATTAAAAAAGTTTTTGTTTTCAGATTGCGAAAAAACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATAATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTTTGATTTTTCAGAACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAACTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGAAATGGAGAGGGAGAAATGAGGTGGAAATGGTGATTCCTTATCATTTTTACAAACTATCGATAAAACTTTTTATCAAAATAGAGTGTTTT</canonical>
            <polymorphic>TCAATCATTTTCCAAATTTTGAATTTCGGAAATTTGTTGAATTAAAAAAGTTTTTGTTTTCAGATTGCGAAAAAACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATAATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAMATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTTTGATTTTTCAGAACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAACTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGAAATGGAGAGGGAGAAATGAGGTGGAAATGGTGATTCCTTATCATTTTTACAAACTATCGATAAAACTTTTTATCAAAATAGAGTGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>331 267 170 76 74 28 24 14 9 7</canonical_bands>
                <polymorphic_bands>405 267 170 76 28 24 14 9 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>170 136 133 124 74 68 52 42 40 28 27 24 15 14 13 9 9 8 7 7</canonical_bands>
                <polymorphic_bands>170 151 136 133 74 68 52 42 40 28 24 15 14 13 9 9 8 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAATTTCCAGAGTGTTTATGG</pcr_primer_p1>
		<pcr_primer_p2>TTGGAGAGTTTTGTAATTACGTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAA</canonical_amplicon>
		<polymorphic_amplicon>TAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAMATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25755</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>350211</contig_pos>
        <strand>+</strand>
        <context>AACATCGAAM[A/C]TTTCAAAAAW</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAA</left_flank>
        <right_flank>TTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATCATTTTCCAAATTTTGAATTTCGGAAATTTGTTGAATTAAAAAAGTTTTTGTTTTCAGATTGCGAAAAAACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATAATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTTTGATTTTTCAGAACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAACTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGAAATGGAGAGGGAGAAATGAGGTGGAAATGGTGATTCCTTATCATTTTTACAAACTATCGATAAAACTTTTTATCAAAATAGAGTGTTTTC</canonical>
            <polymorphic>CAATCATTTTCCAAATTTTGAATTTCGGAAATTTGTTGAATTAAAAAAGTTTTTGTTTTCAGATTGCGAAAAAACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATAATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAMTTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTTTGATTTTTCAGAACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAACTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGAAATGGAGAGGGAGAAATGAGGTGGAAATGGTGATTCCTTATCATTTTTACAAACTATCGATAAAACTTTTTATCAAAATAGAGTGTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>331 267 171 76 74 28 24 13 9 7</canonical_bands>
                <polymorphic_bands>405 267 171 76 28 24 13 9 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>171 136 133 124 74 68 52 42 40 28 27 24 15 13 13 9 9 8 7 7</canonical_bands>
                <polymorphic_bands>171 151 136 133 74 68 52 42 40 28 24 15 13 13 9 9 8 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAATTTCCAGAGTGTTTATGG</pcr_primer_p1>
		<pcr_primer_p2>TTGGAGAGTTTTGTAATTACGTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAA</canonical_amplicon>
		<polymorphic_amplicon>TAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAMTTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25756</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>350221</contig_pos>
        <strand>+</strand>
        <context>MTTTCAAAAA[A/T]AAYCACTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAA</left_flank>
        <right_flank>AAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAATTTTGAATTTCGGAAATTTGTTGAATTAAAAAAGTTTTTGTTTTCAGATTGCGAAAAAACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATAATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTTTGATTTTTCAGAACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAACTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGAAATGGAGAGGGAGAAATGAGGTGGAAATGGTGATTCCTTATCATTTTTACAAACTATCGATAAAACTTTTTATCAAAATAGAGTGTTTTCACATTTCTAA</canonical>
            <polymorphic>CCAAATTTTGAATTTCGGAAATTTGTTGAATTAAAAAAGTTTTTGTTTTCAGATTGCGAAAAAACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATAATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAWAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTTTGATTTTTCAGAACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAACTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGAAATGGAGAGGGAGAAATGAGGTGGAAATGGTGATTCCTTATCATTTTTACAAACTATCGATAAAACTTTTTATCAAAATAGAGTGTTTTCACATTTCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAATTTCCAGAGTGTTTATGG</pcr_primer_p1>
		<pcr_primer_p2>TTGGAGAGTTTTGTAATTACGTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAA</canonical_amplicon>
		<polymorphic_amplicon>TAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAWAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25757</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>350224</contig_pos>
        <strand>+</strand>
        <context>TCAAAAAWAA[C/T]CACTTTTAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAA</left_flank>
        <right_flank>CACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTGAATTTCGGAAATTTGTTGAATTAAAAAAGTTTTTGTTTTCAGATTGCGAAAAAACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATAATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTTTGATTTTTCAGAACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAACTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGAAATGGAGAGGGAGAAATGAGGTGGAAATGGTGATTCCTTATCATTTTTACAAACTATCGATAAAACTTTTTATCAAAATAGAGTGTTTTCACATTTCTAACTG</canonical>
            <polymorphic>AATTTTGAATTTCGGAAATTTGTTGAATTAAAAAAGTTTTTGTTTTCAGATTGCGAAAAAACATTCAACTCACTTCTTCTTGTTCCTCCATTTTCTCAATAGTTTCCGTTTTCACATCTTCCAAAAAGAAAATAACATAATCAGCATATTGTTCACAAGGGAATTGAAAAAAGTTTCAAAATCATCTTCAGTCGTATTTCCGTAATCTATTTCAATTTGCGAAAACGTTGAGGAATGAAGCAAGAGCTGAAAATCAATTGTTGTAAATAAAATTGAGAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAYCACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTTTGATTTTTCAGAACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAACTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGAAATGGAGAGGGAGAAATGAGGTGGAAATGGTGATTCCTTATCATTTTTACAAACTATCGATAAAACTTTTTATCAAAATAGAGTGTTTTCACATTTCTAACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAATTTCCAGAGTGTTTATGG</pcr_primer_p1>
		<pcr_primer_p2>TTGGAGAGTTTTGTAATTACGTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAA</canonical_amplicon>
		<polymorphic_amplicon>TAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAYCACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25758</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>350500</contig_pos>
        <strand>+</strand>
        <context>CGAATGTCCA[C/T]MAACATCTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCA</left_flank>
        <right_flank>AAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTTTGATTTTTCAGAACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAACTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGAAATGGAGAGGGAGAAATGAGGTGGAAATGGTGATTCCTTATCATTTTTACAAACTATCGATAAAACTTTTTATCAAAATAGAGTGTTTTCACATTTCTAACTGGGTGCGATCCGTTACTATTTGAACATGTCGCCCCGTCGGAGGTACCTTGGAACAATATAAGAACACTTCTAATGCAGGCTGTACGGTTTCAAGAAGTCTGAAATTGAAGATATTAAAAACAGAAGAAGTCAAATTTTAAATTATTCATTTCAATGAATGATACACATAAACAAATTATTTCATTCATAATTACAATTCATCAACACGCTTCAGTTATAATGATCAAAATCTTGTAATGGAGACCCGTGCTTCCTCCTTTTCCTGAAGCAACTCATC</canonical>
            <polymorphic>GAAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTTTGATTTTTCAGAACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAACTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCAYAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGAAATGGAGAGGGAGAAATGAGGTGGAAATGGTGATTCCTTATCATTTTTACAAACTATCGATAAAACTTTTTATCAAAATAGAGTGTTTTCACATTTCTAACTGGGTGCGATCCGTTACTATTTGAACATGTCGCCCCGTCGGAGGTACCTTGGAACAATATAAGAACACTTCTAATGCAGGCTGTACGGTTTCAAGAAGTCTGAAATTGAAGATATTAAAAACAGAAGAAGTCAAATTTTAAATTATTCATTTCAATGAATGATACACATAAACAAATTATTTCATTCATAATTACAATTCATCAACACGCTTCAGTTATAATGATCAAAATCTTGTAATGGAGACCCGTGCTTCCTCCTTTTCCTGAAGCAACTCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCAGTTCTAAATCTCGACAA</pcr_primer_p1>
		<pcr_primer_p2>TCGTCTTCATTTTTCTTTAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAACTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGA</canonical_amplicon>
		<polymorphic_amplicon>AACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAACTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCAYAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25759</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>350501</contig_pos>
        <strand>+</strand>
        <context>GAATGTCCAY[A/C]AACATCTAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCAT</left_flank>
        <right_flank>AACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGTTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTTTGATTTTTCAGAACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAACTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGAAATGGAGAGGGAGAAATGAGGTGGAAATGGTGATTCCTTATCATTTTTACAAACTATCGATAAAACTTTTTATCAAAATAGAGTGTTTTCACATTTCTAACTGGGTGCGATCCGTTACTATTTGAACATGTCGCCCCGTCGGAGGTACCTTGGAACAATATAAGAACACTTCTAATGCAGGCTGTACGGTTTCAAGAAGTCTGAAATTGAAGATATTAAAAACAGAAGAAGTCAAATTTTAAATTATTCATTTCAATGAATGATACACATAAACAAATTATTTCATTCATAATTACAATTCATCAACACGCTTCAGTTATAATGATCAAAATCTTGTAATGGAGACCCGTGCTTCCTCCTTTTCCTGAAGCAACTCATCC</canonical>
            <polymorphic>AAAAAAAATTCACAGTTTTCACAGATTCCAAATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTTTGATTTTTCAGAACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAACTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCATMAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGAAATGGAGAGGGAGAAATGAGGTGGAAATGGTGATTCCTTATCATTTTTACAAACTATCGATAAAACTTTTTATCAAAATAGAGTGTTTTCACATTTCTAACTGGGTGCGATCCGTTACTATTTGAACATGTCGCCCCGTCGGAGGTACCTTGGAACAATATAAGAACACTTCTAATGCAGGCTGTACGGTTTCAAGAAGTCTGAAATTGAAGATATTAAAAACAGAAGAAGTCAAATTTTAAATTATTCATTTCAATGAATGATACACATAAACAAATTATTTCATTCATAATTACAATTCATCAACACGCTTCAGTTATAATGATCAAAATCTTGTAATGGAGACCCGTGCTTCCTCCTTTTCCTGAAGCAACTCATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCAGTTCTAAATCTCGACAA</pcr_primer_p1>
		<pcr_primer_p2>TCGTCTTCATTTTTCTTTAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAACTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGA</canonical_amplicon>
		<polymorphic_amplicon>AACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAACTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCATMAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25760</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>350524</contig_pos>
        <strand>+</strand>
        <context>AACTTTCCTC[A/G]ACTTGAAMAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTC</left_flank>
        <right_flank>ACTTGAACAATATTCGAATTCGTTTTATATTCCTTCTTTCAAAGATAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTCCAAATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTTTGATTTTTCAGAACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAACTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGAAATGGAGAGGGAGAAATGAGGTGGAAATGGTGATTCCTTATCATTTTTACAAACTATCGATAAAACTTTTTATCAAAATAGAGTGTTTTCACATTTCTAACTGGGTGCGATCCGTTACTATTTGAACATGTCGCCCCGTCGGAGGTACCTTGGAACAATATAAGAACACTTCTAATGCAGGCTGTACGGTTTCAAGAAGTCTGAAATTGAAGATATTAAAAACAGAAGAAGTCAAATTTTAAATTATTCATTTCAATGAATGATACACATAAACAAATTATTTCATTCATAATTACAATTCATCAACACGCTTCAGTTATAATGATCAAAATCTTGTAATGGAGACCCGTGCTTCCTCCTTTTCCTGAAGCAACTCATCCAACTGTCTTCTGGTTCTGATGAG</canonical>
            <polymorphic>GATTCCAAATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTTTGATTTTTCAGAACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAACTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCRACTTGAACAATATTCGAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGAAATGGAGAGGGAGAAATGAGGTGGAAATGGTGATTCCTTATCATTTTTACAAACTATCGATAAAACTTTTTATCAAAATAGAGTGTTTTCACATTTCTAACTGGGTGCGATCCGTTACTATTTGAACATGTCGCCCCGTCGGAGGTACCTTGGAACAATATAAGAACACTTCTAATGCAGGCTGTACGGTTTCAAGAAGTCTGAAATTGAAGATATTAAAAACAGAAGAAGTCAAATTTTAAATTATTCATTTCAATGAATGATACACATAAACAAATTATTTCATTCATAATTACAATTCATCAACACGCTTCAGTTATAATGATCAAAATCTTGTAATGGAGACCCGTGCTTCCTCCTTTTCCTGAAGCAACTCATCCAACTGTCTTCTGGTTCTGATGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>345 140 130 110 58 52 52 43 33 21 16</canonical_bands>
                <polymorphic_bands>345 140 130 110 58 52 52 49 43 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACCAGTTCTAAATCTCGACAA</pcr_primer_p1>
		<pcr_primer_p2>TCGTCTTCATTTTTCTTTAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAACTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGA</canonical_amplicon>
		<polymorphic_amplicon>AACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAACTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCRACTTGAACAATATTCGAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25761</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>350532</contig_pos>
        <strand>+</strand>
        <context>TCRACTTGAA[A/C]AATATTCSAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAA</left_flank>
        <right_flank>AATATTCGAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTTTGATTTTTCAGAACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAACTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGAAATGGAGAGGGAGAAATGAGGTGGAAATGGTGATTCCTTATCATTTTTACAAACTATCGATAAAACTTTTTATCAAAATAGAGTGTTTTCACATTTCTAACTGGGTGCGATCCGTTACTATTTGAACATGTCGCCCCGTCGGAGGTACCTTGGAACAATATAAGAACACTTCTAATGCAGGCTGTACGGTTTCAAGAAGTCTGAAATTGAAGATATTAAAAACAGAAGAAGTCAAATTTTAAATTATTCATTTCAATGAATGATACACATAAACAAATTATTTCATTCATAATTACAATTCATCAACACGCTTCAGTTATAATGATCAAAATCTTGTAATGGAGACCCGTGCTTCCTCCTTTTCCTGAAGCAACTCATCCAACTGTCTTCTGGTTCTGATGAGATCATTCT</canonical>
            <polymorphic>ATTTTCGCCTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTTTGATTTTTCAGAACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAACTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAAMAATATTCGAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGAAATGGAGAGGGAGAAATGAGGTGGAAATGGTGATTCCTTATCATTTTTACAAACTATCGATAAAACTTTTTATCAAAATAGAGTGTTTTCACATTTCTAACTGGGTGCGATCCGTTACTATTTGAACATGTCGCCCCGTCGGAGGTACCTTGGAACAATATAAGAACACTTCTAATGCAGGCTGTACGGTTTCAAGAAGTCTGAAATTGAAGATATTAAAAACAGAAGAAGTCAAATTTTAAATTATTCATTTCAATGAATGATACACATAAACAAATTATTTCATTCATAATTACAATTCATCAACACGCTTCAGTTATAATGATCAAAATCTTGTAATGGAGACCCGTGCTTCCTCCTTTTCCTGAAGCAACTCATCCAACTGTCTTCTGGTTCTGATGAGATCATTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATATATGATGGTTCTCGAATGT</pcr_primer_p1>
		<pcr_primer_p2>CCAGTTAGAAATGTGAAAACACT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGAAATGGAGAGGGAGAAATGAGGTGGAAATGGTGATTCCTTATCATTTTTACAAACTATCGATAAAACTTTTTATCAAAATAGAGTGTTTTCACATTTCTAACTGG</canonical_amplicon>
		<polymorphic_amplicon>CATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAAMAATATTCGAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGAAATGGAGAGGGAGAAATGAGGTGGAAATGGTGATTCCTTATCATTTTTACAAACTATCGATAAAACTTTTTATCAAAATAGAGTGTTTTCACATTTCTAACTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25762</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>350540</contig_pos>
        <strand>+</strand>
        <context>AAMAATATTC[C/G]AATTCGWTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTC</left_flank>
        <right_flank>AATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTTTGATTTTTCAGAACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAACTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGAAATGGAGAGGGAGAAATGAGGTGGAAATGGTGATTCCTTATCATTTTTACAAACTATCGATAAAACTTTTTATCAAAATAGAGTGTTTTCACATTTCTAACTGGGTGCGATCCGTTACTATTTGAACATGTCGCCCCGTCGGAGGTACCTTGGAACAATATAAGAACACTTCTAATGCAGGCTGTACGGTTTCAAGAAGTCTGAAATTGAAGATATTAAAAACAGAAGAAGTCAAATTTTAAATTATTCATTTCAATGAATGATACACATAAACAAATTATTTCATTCATAATTACAATTCATCAACACGCTTCAGTTATAATGATCAAAATCTTGTAATGGAGACCCGTGCTTCCTCCTTTTCCTGAAGCAACTCATCCAACTGTCTTCTGGTTCTGATGAGATCATTCTCGGTTTTT</canonical>
            <polymorphic>CTGAGAAATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTTTGATTTTTCAGAACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAACTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCSAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGAAATGGAGAGGGAGAAATGAGGTGGAAATGGTGATTCCTTATCATTTTTACAAACTATCGATAAAACTTTTTATCAAAATAGAGTGTTTTCACATTTCTAACTGGGTGCGATCCGTTACTATTTGAACATGTCGCCCCGTCGGAGGTACCTTGGAACAATATAAGAACACTTCTAATGCAGGCTGTACGGTTTCAAGAAGTCTGAAATTGAAGATATTAAAAACAGAAGAAGTCAAATTTTAAATTATTCATTTCAATGAATGATACACATAAACAAATTATTTCATTCATAATTACAATTCATCAACACGCTTCAGTTATAATGATCAAAATCTTGTAATGGAGACCCGTGCTTCCTCCTTTTCCTGAAGCAACTCATCCAACTGTCTTCTGGTTCTGATGAGATCATTCTCGGTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>331 315 185 74 67 28</canonical_bands>
                <polymorphic_bands>646 185 74 67 28</polymorphic_bands>
            </assay>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 260 238</canonical_bands>
                <polymorphic_bands>762 238</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>361 140 130 110 58 52 43 36 33 21 16</canonical_bands>
                <polymorphic_bands>361 156 130 110 58 52 43 36 33 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATATATGATGGTTCTCGAATGT</pcr_primer_p1>
		<pcr_primer_p2>CCAGTTAGAAATGTGAAAACACT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGAAATGGAGAGGGAGAAATGAGGTGGAAATGGTGATTCCTTATCATTTTTACAAACTATCGATAAAACTTTTTATCAAAATAGAGTGTTTTCACATTTCTAACTGG</canonical_amplicon>
		<polymorphic_amplicon>CATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCSAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGAAATGGAGAGGGAGAAATGAGGTGGAAATGGTGATTCCTTATCATTTTTACAAACTATCGATAAAACTTTTTATCAAAATAGAGTGTTTTCACATTTCTAACTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25763</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>350547</contig_pos>
        <strand>+</strand>
        <context>TTCSAATTCG[A/T]TTTATATTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCATAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCG</left_flank>
        <right_flank>TTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTTTGATTTTTCAGAACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAACTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGAAATGGAGAGGGAGAAATGAGGTGGAAATGGTGATTCCTTATCATTTTTACAAACTATCGATAAAACTTTTTATCAAAATAGAGTGTTTTCACATTTCTAACTGGGTGCGATCCGTTACTATTTGAACATGTCGCCCCGTCGGAGGTACCTTGGAACAATATAAGAACACTTCTAATGCAGGCTGTACGGTTTCAAGAAGTCTGAAATTGAAGATATTAAAAACAGAAGAAGTCAAATTTTAAATTATTCATTTCAATGAATGATACACATAAACAAATTATTTCATTCATAATTACAATTCATCAACACGCTTCAGTTATAATGATCAAAATCTTGTAATGGAGACCCGTGCTTCCTCCTTTTCCTGAAGCAACTCATCCAACTGTCTTCTGGTTCTGATGAGATCATTCTCGGTTTTTGAATGGA</canonical>
            <polymorphic>ATCGTTGACATTAATGTCCAGTTTTAATCGATTTCCTTTGTTCCAATAAACCAATTTTAAAATTTCCAGAGTGTTTATGGTATTCGCAAATTCAAAATTAACCCTTCCCAGGATTTCCGCATGCAATAAAAAAATAATTTGGAGAGTTTGAAAAACATCGAAAATTTCAAAAAAAAACACTTTTAACTCTCAATGGCTCGTTTCTGGATTCGAGTGACTTTTTGAAAGCTTCGAAGAAATATTCCAACTTTTTCTCGCCTATTTCCTTTAAATCATCATCTGACGTAATTACAAAACTCTCCAAACAATCAGTTTGATTTTTCAGAACCAGTTCTAAATCTCGACAAAAAACTCGCAAGTAATTGTCATCAACTTGAAAATCATCGATTCTTCCCATCGTAACTGTAGTGTTTCCAGAACTATTTTCATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGWTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGAAATGGAGAGGGAGAAATGAGGTGGAAATGGTGATTCCTTATCATTTTTACAAACTATCGATAAAACTTTTTATCAAAATAGAGTGTTTTCACATTTCTAACTGGGTGCGATCCGTTACTATTTGAACATGTCGCCCCGTCGGAGGTACCTTGGAACAATATAAGAACACTTCTAATGCAGGCTGTACGGTTTCAAGAAGTCTGAAATTGAAGATATTAAAAACAGAAGAAGTCAAATTTTAAATTATTCATTTCAATGAATGATACACATAAACAAATTATTTCATTCATAATTACAATTCATCAACACGCTTCAGTTATAATGATCAAAATCTTGTAATGGAGACCCGTGCTTCCTCCTTTTCCTGAAGCAACTCATCCAACTGTCTTCTGGTTCTGATGAGATCATTCTCGGTTTTTGAATGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATATATGATGGTTCTCGAATGT</pcr_primer_p1>
		<pcr_primer_p2>CCAGTTAGAAATGTGAAAACACT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGTTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGAAATGGAGAGGGAGAAATGAGGTGGAAATGGTGATTCCTTATCATTTTTACAAACTATCGATAAAACTTTTTATCAAAATAGAGTGTTTTCACATTTCTAACTGG</canonical_amplicon>
		<polymorphic_amplicon>CATATATGATGGTTCTCGAATGTCCATAAACATCTAGTTCAACTTTCCTCGACTTGAACAATATTCGAATTCGWTTTATATTCCTTCTTTCAAAGATAGTTAGTTTTTCGTAGGCGGAATACATAGTTTTAAAGAAAAATGAAGACGAAATGGAGAGGGAGAAATGAGGTGGAAATGGTGATTCCTTATCATTTTTACAAACTATCGATAAAACTTTTTATCAAAATAGAGTGTTTTCACATTTCTAACTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25764</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>380908</contig_pos>
        <strand>+</strand>
        <context>CGCATGGGSA[C/G]GACTTCCCGT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAGAATCTTCACCACAAAAAATTCCAAACCCATTTTGAAACGCATGGGCA</left_flank>
        <right_flank>GACTTCCCGTTTGTGTCAGCAAACAGTCGAAAAAAGACAGAAAGAAATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTGATTTAAAAATTGAAAAACCTTAAAAATTCGCTTCAAAAGGCGACAAATCTCAATTCCTGTCTACTTCTGGAATAAATTTTTGAATTATCACTAAAACTGAAAATTCTAGGCCACTTATGTAAATGTGTCAGAAATGATTAACGGTGAGTTTTCAGTATTGGCGGGAATGCAAAAAAAGATTCCAGAACCTTCGGAAAAGAGACGAGAACTGAAATTGTTTGGTTTTTTACTTTTTGAGCAATTTTTGCTTCTAGAACTTACTCTAGCCAATCCAATTTCAATCATTCTGATTGATTTTCAATCATTCTGATTGATTTTCAATCATTCTGATTGATTTTGAAATCATCTAGAAATCAAAAACAATCTTTCTTATCACACTGTTTCAAATCTTGGATTCCTCATCTTCCAGCTCCTCTTCCAACTTTTACGATCCATTCTTCAGTGAGAATCTTCACCACAAAAAATTCCAAACCCATTTTGAAACGCATGGGCAAGACTTCCCGTTTGTGTCAGCAAACAGTCGAAAAAAGACAGAAAGAAATGAGTCAGAGTGTCGAAAATATTAACGGCACGAGAGGCGACGACGACGACACAGCATTGTTTTTTGGGGGGTGTTTTCAGCAGCATTTCTCTTGTTTTTCTTTGTTCTGTTTTAAAAAGCAAAGAGTACGATTTTATTCACTTCAGTCAGTAGGTTCGATTTTCAGGGTTCAGTTGTTTAGAGGGCTCAAATTTTAGATATTTTAAGAGTCGTCATGACATCAATTGGGTAGTCAACTAGAAAAGGGCAAATTTTTGATTTTTTGAATATCGTCATTTTTCGGATATTTTCGGATAAACAACAGATTTCTAATGTTTCGTAAGAGATCTGGGAAAATATGTGTCAACAAATCGGTGCCACGTGGGACTAAATTTTGTACAGACTATCAGCAAACTGATGCACCTTCGGCGCGATTTAACCTAGTTGTTTATTGGCCCGTCGCTTCGCTTCTCA</canonical>
            <polymorphic>AAATTGATTTAAAAATTGAAAAACCTTAAAAATTCGCTTCAAAAGGCGACAAATCTCAATTCCTGTCTACTTCTGGAATAAATTTTTGAATTATCACTAAAACTGAAAATTCTAGGCCACTTATGTAAATGTGTCAGAAATGATTAACGGTGAGTTTTCAGTATTGGCGGGAATGCAAAAAAAGATTCCAGAACCTTCGGAAAAGAGACGAGAACTGAAATTGTTTGGTTTTTTACTTTTTGAGCAATTTTTGCTTCTAGAACTTACTCTAGCCAATCCAATTTCAATCATTCTGATTGATTTTCAATCATTCTGATTGATTTTCAATCATTCTGATTGATTTTGAAATCATCTAGAAATCAAAAACAATCTTTCTTATCACACTGTTTCAAATCTTGGATTCCTCATCTTCCAGCTCCTCTTCCAACTTTTACGATCCATTCTTCAGTGAGAATCTTCACCACAAAAAATTCCAAACCCATTTTGAAACGCATGGGCASGACTTCCCGTTTGTGTCAGCAAACAGTCGAAAAAAGACAGAAAGAAATGAGTCAGAGTGTCGAAAATATTAACGGCACGAGAGGCGACGACGACGACACAGCATTGTTTTTTGGGGGGTGTTTTCAGCAGCATTTCTCTTGTTTTTCTTTGTTCTGTTTTAAAAAGCAAAGAGTACGATTTTATTCACTTCAGTCAGTAGGTTCGATTTTCAGGGTTCAGTTGTTTAGAGGGCTCAAATTTTAGATATTTTAAGAGTCGTCATGACATCAATTGGGTAGTCAACTAGAAAAGGGCAAATTTTTGATTTTTTGAATATCGTCATTTTTCGGATATTTTCGGATAAACAACAGATTTCTAATGTTTCGTAAGAGATCTGGGAAAATATGTGTCAACAAATCGGTGCCACGTGGGACTAAATTTTGTACAGACTATCAGCAAACTGATGCACCTTCGGCGCGATTTAACCTAGTTGTTTATTGGCCCGTCGCTTCGCTTCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGAGAATCTTCACCACAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTGACTGAAGTGAATAAAATCGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGAGAATCTTCACCACAAAAAATTCCAAACCCATTTTGAAACGCATGGGCAAGACTTCCCGTTTGTGTCAGCAAACAGTCGAAAAAAGACAGAAAGAAATGAGTCAGAGTGTCGAAAATATTAACGGCACGAGAGGCGACGACGACGACACAGCATTGTTTTTTGGGGGGTGTTTTCAGCAGCATTTCTCTTGTTTTTCTTTGTTCTGTTTTAAAAAGCAAAGAGTACGATTTTATTCACTTCAGTCAG</canonical_amplicon>
		<polymorphic_amplicon>GTGAGAATCTTCACCACAAAAAATTCCAAACCCATTTTGAAACGCATGGGCASGACTTCCCGTTTGTGTCAGCAAACAGTCGAAAAAAGACAGAAAGAAATGAGTCAGAGTGTCGAAAATATTAACGGCACGAGAGGCGACGACGACGACACAGCATTGTTTTTTGGGGGGTGTTTTCAGCAGCATTTCTCTTGTTTTTCTTTGTTCTGTTTTAAAAAGCAAAGAGTACGATTTTATTCACTTCAGTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25765</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>382672</contig_pos>
        <strand></strand>
        <context>AAaagctttc[C/G]cgtcgagaac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCAACAAATTGCAAGTTTTGCTTCTTTCTGAAAAACCGCAAAAAGCTTTC</left_flank>
        <right_flank>CGTCGAGAACAACGGTAATTTACTGTAGCAATTCTACAGGAGTATTACGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCATGCGGGAGTACAAAATCGTCGTTTTGGGATCGGGAGGAGTCGGAAAGTCGGCGTTGACCGTGCAGTTTGTTCAAGGCATTTTCGTCGAGAAGTACGATCCAACGATTGAGGACAGCTACAGAAAAGTGAGTGGCGCTTCTAGAATCTTCTAGAAGCTTTGTGATTCGGCGGGAATTTAAAAAAAAGAAAAGAAAAATAGCATTTTGCTGCGGCCGCAACAGCCAAAAACTCTCGATTTTTCTAGGTCATTTGCTTGTCCACGTAGATTCCTTAGCCAGCTAATAGAGATCCTTGTCGTAAATACCAGGCGCCTTTAACGTTGAAGCGATTTACGAGCTCGAAATTAAAGGCCCATCGAGTTTCCTGCAAGAGCCTCGCTGAGCGGACTTTGGAATCCACGTGGACAAGCAAATGACCTAGAAATTTTCAGAATTTTTAGCGGCCTCAACAAATTGCAAGTTTTGCTTCTTTCTGAAAAACCGCAAAAAGCTTTCCCGTCGAGAACAACGGTAATTTACTGTAGCAATTCTACAGGAGTATTACGGTTGAGCGCATTTTCACGACGATCCCGAAAGAAACACTGTGATTAGGCGGGAAATTCAAAATTTCAATTTTTGCAGCAAGTGGAAGTCGATGGTCAACAATGCATGCTGGAGATTCTGGACACGGCCGGCACGGAACAGTTCACAGCGATGCGTGATTTGTACATGAAGAACGGACAGGGATTCGTGCTCGTTTATTCCATCACAGCACAATCGACATTTAACGATTTGATGGATCTTCGTGATCAGATTCTTCGCGTTAAGGACACTGATGAGGTAGGCGAAGAGCTTATTGGAAAAGGGATCTGTTATAGTTCCTTTTTAAATCATAATTCTCTAATCATCCAAATTTGATGTGATAGCCCTCGATGAGTGCTACAAACATGATAATATTTAGACAATTGTATCTTGCCCATGAACAAAGTTACAGGGTCACAAAGCTGTGATCGCGTA</canonical>
            <polymorphic>CATCATGCGGGAGTACAAAATCGTCGTTTTGGGATCGGGAGGAGTCGGAAAGTCGGCGTTGACCGTGCAGTTTGTTCAAGGCATTTTCGTCGAGAAGTACGATCCAACGATTGAGGACAGCTACAGAAAAGTGAGTGGCGCTTCTAGAATCTTCTAGAAGCTTTGTGATTCGGCGGGAATTTAAAAAAAAGAAAAGAAAAATAGCATTTTGCTGCGGCCGCAACAGCCAAAAACTCTCGATTTTTCTAGGTCATTTGCTTGTCCACGTAGATTCCTTAGCCAGCTAATAGAGATCCTTGTCGTAAATACCAGGCGCCTTTAACGTTGAAGCGATTTACGAGCTCGAAATTAAAGGCCCATCGAGTTTCCTGCAAGAGCCTCGCTGAGCGGACTTTGGAATCCACGTGGACAAGCAAATGACCTAGAAATTTTCAGAATTTTTAGCGGCCTCAACAAATTGCAAGTTTTGCTTCTTTCTGAAAAACCGCAAAAAGCTTTCSCGTCGAGAACAACGGTAATTTACTGTAGCAATTCTACAGGAGTATTACGGTTGAGCGCATTTTCACGACGATCCCGAAAGAAACACTGTGATTAGGCGGGAAATTCAAAATTTCAATTTTTGCAGCAAGTGGAAGTCGATGGTCAACAATGCATGCTGGAGATTCTGGACACGGCCGGCACGGAACAGTTCACAGCGATGCGTGATTTGTACATGAAGAACGGACAGGGATTCGTGCTCGTTTATTCCATCACAGCACAATCGACATTTAACGATTTGATGGATCTTCGTGATCAGATTCTTCGCGTTAAGGACACTGATGAGGTAGGCGAAGAGCTTATTGGAAAAGGGATCTGTTATAGTTCCTTTTTAAATCATAATTCTCTAATCATCCAAATTTGATGTGATAGCCCTCGATGAGTGCTACAAACATGATAATATTTAGACAATTGTATCTTGCCCATGAACAAAGTTACAGGGTCACAAAGCTGTGATCGCGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCTACAGAAAAGTGAGTGG</pcr_primer_p1>
		<pcr_primer_p2>ACTTGCTGCAAAAATTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>513</pcr_amplicon_size>
		<canonical_amplicon>CAGCTACAGAAAAGTGAGTGGCGCTTCTAGAATCTTCTAGAAGCTTTGTGATTCGGCGGGAATTTAAAAAAAAGAAAAGAAAAATAGCATTTTGCTGCGGCCGCAACAGCCAAAAACTCTCGATTTTTCTAGGTCATTTGCTTGTCCACGTAGATTCCTTAGCCAGCTAATAGAGATCCTTGTCGTAAATACCAGGCGCCTTTAACGTTGAAGCGATTTACGAGCTCGAAATTAAAGGCCCATCGAGTTTCCTGCAAGAGCCTCGCTGAGCGGACTTTGGAATCCACGTGGACAAGCAAATGACCTAGAAATTTTCAGAATTTTTAGCGGCCTCAACAAATTGCAAGTTTTGCTTCTTTCTGAAAAACCGCAAAAAGCTTTCCCGTCGAGAACAACGGTAATTTACTGTAGCAATTCTACAGGAGTATTACGGTTGAGCGCATTTTCACGACGATCCCGAAAGAAACACTGTGATTAGGCGGGAAATTCAAAATTTCAATTTTTGCAGCAAGT</canonical_amplicon>
		<polymorphic_amplicon>CAGCTACAGAAAAGTGAGTGGCGCTTCTAGAATCTTCTAGAAGCTTTGTGATTCGGCGGGAATTTAAAAAAAAGAAAAGAAAAATAGCATTTTGCTGCGGCCGCAACAGCCAAAAACTCTCGATTTTTCTAGGTCATTTGCTTGTCCACGTAGATTCCTTAGCCAGCTAATAGAGATCCTTGTCGTAAATACCAGGCGCCTTTAACGTTGAAGCGATTTACGAGCTCGAAATTAAAGGCCCATCGAGTTTCCTGCAAGAGCCTCGCTGAGCGGACTTTGGAATCCACGTGGACAAGCAAATGACCTAGAAATTTTCAGAATTTTTAGCGGCCTCAACAAATTGCAAGTTTTGCTTCTTTCTGAAAAACCGCAAAAAGCTTTCSCGTCGAGAACAACGGTAATTTACTGTAGCAATTCTACAGGAGTATTACGGTTGAGCGCATTTTCACGACGATCCCGAAAGAAACACTGTGATTAGGCGGGAAATTCAAAATTTCAATTTTTGCAGCAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25766</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>421487</contig_pos>
        <strand>+</strand>
        <context>ATCGAGTCGA[A/G]AGAAGCATGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAATGCTGAAACATCGAATCGCACGGAAGGCTGGCGAGAATCGAGTCGA</left_flank>
        <right_flank>AGAAGCATGCTTCTGAAGCTTCGTCAATGACGGTGTTTTTCAAATAAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGCACAACGGATAGACAAGCGTGCTCACCTCTACACCACACAGGGCTTGTCGGCTTCTGCCGCTAAAACGGTTATGAAATGAGGAGTGGGTGCCGCTTGGAAGAACGGTCGCGTTTTCGCTTGTACAATAACAGGGAGTTATGGTTTGGTGTCCCTTGTTATTTTCTGACTGTACTGTGGCATATATCAAAAAACTAGACTTTTGAAAATTTTCATGTCTGGCCTCCTTTAAAAATAAGGGAAAATGACCAAAATTCGAAAAAAAATAAACCAGAATTTTTTTTTAAAAATCATGAAAACACATGCTCCTTTAAGGATTCCGCTATCGAACCCTAAGCTCCGCCCACTCTTGAATTTTCGGCCGCCATTTTCCTAACAACTAACAGTTTCATTCAATCTCGTCGCTACATGATCCAACTGATGTGGTGCGGGTTTCTCGTGTGAAAAATCAATGCTGAAACATCGAATCGCACGGAAGGCTGGCGAGAATCGAGTCGAGAGAAGCATGCTTCTGAAGCTTCGTCAATGACGGTGTTTTTCAAATAAACAAAGAAACTTCAGCGGCGGTCAATAGCCATGTGTTGTTTTTGTACAAGAAAAGAAAACGGATGCTTTAATTTGTCAATACATATAAAATAGGCAAACGGATAAAATGCTCATTGTGTGCAGTAATCAGAAAGAATGTGAATTCATATATAGAACATGAAAAGATAATAATAAATTATGGTTGTCCGAGATCCTTCAAGCTTCAGCCTGCGCAGTTTCTTCCTCCTCCCCTGCTTCTTCCTCTTCTCCAGCTTCTTCTCCTTGTCCCTCTTCCTCTTCATCGTCCTCCTCTTCCTCCTCATCATCCCCATCTTCCTCTCCATCAGCAATCACACCAGCATCACCTTCACCTTCCTCCTCTTCCTCATCCTCCCCTTCTGATTCATCCTCATCCATCTCCTCTTCTTCAACATCCGCTTCCATCTCCAACTCCAACTTTGGCGAACCGCCGCC</canonical>
            <polymorphic>ATGCACAACGGATAGACAAGCGTGCTCACCTCTACACCACACAGGGCTTGTCGGCTTCTGCCGCTAAAACGGTTATGAAATGAGGAGTGGGTGCCGCTTGGAAGAACGGTCGCGTTTTCGCTTGTACAATAACAGGGAGTTATGGTTTGGTGTCCCTTGTTATTTTCTGACTGTACTGTGGCATATATCAAAAAACTAGACTTTTGAAAATTTTCATGTCTGGCCTCCTTTAAAAATAAGGGAAAATGACCAAAATTCGAAAAAAAATAAACCAGAATTTTTTTTTAAAAATCATGAAAACACATGCTCCTTTAAGGATTCCGCTATCGAACCCTAAGCTCCGCCCACTCTTGAATTTTCGGCCGCCATTTTCCTAACAACTAACAGTTTCATTCAATCTCGTCGCTACATGATCCAACTGATGTGGTGCGGGTTTCTCGTGTGAAAAATCAATGCTGAAACATCGAATCGCACGGAAGGCTGGCGAGAATCGAGTCGARAGAAGCATGCTTCTGAAGCTTCGTCAATGACGGTGTTTTTCAAATAAACAAAGAAACTTCAGCGGCGGTCAATAGCCATGTGTTGTTTTTGTACAAGAAAAGAAAACGGATGCTTTAATTTGTCAATACATATAAAATAGGCAAACGGATAAAATGCTCATTGTGTGCAGTAATCAGAAAGAATGTGAATTCATATATAGAACATGAAAAGATAATAATAAATTATGGTTGTCCGAGATCCTTCAAGCTTCAGCCTGCGCAGTTTCTTCCTCCTCCCCTGCTTCTTCCTCTTCTCCAGCTTCTTCTCCTTGTCCCTCTTCCTCTTCATCGTCCTCCTCTTCCTCCTCATCATCCCCATCTTCCTCTCCATCAGCAATCACACCAGCATCACCTTCACCTTCCTCCTCTTCCTCATCCTCCCCTTCTGATTCATCCTCATCCATCTCCTCTTCTTCAACATCCGCTTCCATCTCCAACTCCAACTTTGGCGAACCGCCGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>503 293 147 57</canonical_bands>
                <polymorphic_bands>650 293 57</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTACATGATCCAACTGATGT</pcr_primer_p1>
		<pcr_primer_p2>TATCCGTTTGCCTATTTTATATG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GCTACATGATCCAACTGATGTGGTGCGGGTTTCTCGTGTGAAAAATCAATGCTGAAACATCGAATCGCACGGAAGGCTGGCGAGAATCGAGTCGAGAGAAGCATGCTTCTGAAGCTTCGTCAATGACGGTGTTTTTCAAATAAACAAAGAAACTTCAGCGGCGGTCAATAGCCATGTGTTGTTTTTGTACAAGAAAAGAAAACGGATGCTTTAATTTGTCAATACATATAAAATAGGCAAACGGATA</canonical_amplicon>
		<polymorphic_amplicon>GCTACATGATCCAACTGATGTGGTGCGGGTTTCTCGTGTGAAAAATCAATGCTGAAACATCGAATCGCACGGAAGGCTGGCGAGAATCGAGTCGARAGAAGCATGCTTCTGAAGCTTCGTCAATGACGGTGTTTTTCAAATAAACAAAGAAACTTCAGCGGCGGTCAATAGCCATGTGTTGTTTTTGTACAAGAAAAGAAAACGGATGCTTTAATTTGTCAATACATATAAAATAGGCAAACGGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25767</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>421718</contig_pos>
        <strand>+</strand>
        <context>AATTATGGTT[G/T]TCCGAGATCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAATGTGAATTCATATATAGAACATGAAAAGATAATAATAAATTATGGTT</left_flank>
        <right_flank>TCCGAGATCCTTCAAGCTTCAGCCTGCGCAGTTTCTTCCTCCTCCCCTGC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATAAGGGAAAATGACCAAAATTCGAAAAAAAATAAACCAGAATTTTTTTTTAAAAATCATGAAAACACATGCTCCTTTAAGGATTCCGCTATCGAACCCTAAGCTCCGCCCACTCTTGAATTTTCGGCCGCCATTTTCCTAACAACTAACAGTTTCATTCAATCTCGTCGCTACATGATCCAACTGATGTGGTGCGGGTTTCTCGTGTGAAAAATCAATGCTGAAACATCGAATCGCACGGAAGGCTGGCGAGAATCGAGTCGAGAGAAGCATGCTTCTGAAGCTTCGTCAATGACGGTGTTTTTCAAATAAACAAAGAAACTTCAGCGGCGGTCAATAGCCATGTGTTGTTTTTGTACAAGAAAAGAAAACGGATGCTTTAATTTGTCAATACATATAAAATAGGCAAACGGATAAAATGCTCATTGTGTGCAGTAATCAGAAAGAATGTGAATTCATATATAGAACATGAAAAGATAATAATAAATTATGGTTGTCCGAGATCCTTCAAGCTTCAGCCTGCGCAGTTTCTTCCTCCTCCCCTGCTTCTTCCTCTTCTCCAGCTTCTTCTCCTTGTCCCTCTTCCTCTTCATCGTCCTCCTCTTCCTCCTCATCATCCCCATCTTCCTCTCCATCAGCAATCACACCAGCATCACCTTCACCTTCCTCCTCTTCCTCATCCTCCCCTTCTGATTCATCCTCATCCATCTCCTCTTCTTCAACATCCGCTTCCATCTCCAACTCCAACTTTGGCGAACCGCCGCCACCTCGCTTGTTGATCGGTTTTCCATTCTGAAAAGTTTCTTTGGTAACTAGCTAATGCCACGTGTCAAGTACCTCATCCAATCCTCGCTCCTCGTTCAAAAAACCTTCAATATCATCCTCATCGACCTCCTGCATATCAGGCATCACATAGTACTGAAGTGGATTGATGAACAAGTCGTCCTTAATCACCTCGGCTATCTCGTCACTGTCTGGTGGAGCAGCGTATGAAAG</canonical>
            <polymorphic>AAAAATAAGGGAAAATGACCAAAATTCGAAAAAAAATAAACCAGAATTTTTTTTTAAAAATCATGAAAACACATGCTCCTTTAAGGATTCCGCTATCGAACCCTAAGCTCCGCCCACTCTTGAATTTTCGGCCGCCATTTTCCTAACAACTAACAGTTTCATTCAATCTCGTCGCTACATGATCCAACTGATGTGGTGCGGGTTTCTCGTGTGAAAAATCAATGCTGAAACATCGAATCGCACGGAAGGCTGGCGAGAATCGAGTCGAGAGAAGCATGCTTCTGAAGCTTCGTCAATGACGGTGTTTTTCAAATAAACAAAGAAACTTCAGCGGCGGTCAATAGCCATGTGTTGTTTTTGTACAAGAAAAGAAAACGGATGCTTTAATTTGTCAATACATATAAAATAGGCAAACGGATAAAATGCTCATTGTGTGCAGTAATCAGAAAGAATGTGAATTCATATATAGAACATGAAAAGATAATAATAAATTATGGTTKTCCGAGATCCTTCAAGCTTCAGCCTGCGCAGTTTCTTCCTCCTCCCCTGCTTCTTCCTCTTCTCCAGCTTCTTCTCCTTGTCCCTCTTCCTCTTCATCGTCCTCCTCTTCCTCCTCATCATCCCCATCTTCCTCTCCATCAGCAATCACACCAGCATCACCTTCACCTTCCTCCTCTTCCTCATCCTCCCCTTCTGATTCATCCTCATCCATCTCCTCTTCTTCAACATCCGCTTCCATCTCCAACTCCAACTTTGGCGAACCGCCGCCACCTCGCTTGTTGATCGGTTTTCCATTCTGAAAAGTTTCTTTGGTAACTAGCTAATGCCACGTGTCAAGTACCTCATCCAATCCTCGCTCCTCGTTCAAAAAACCTTCAATATCATCCTCATCGACCTCCTGCATATCAGGCATCACATAGTACTGAAGTGGATTGATGAACAAGTCGTCCTTAATCACCTCGGCTATCTCGTCACTGTCTGGTGGAGCAGCGTATGAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGTAATCAGAAAGAATGTGAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAACTTTTCAGAATGGAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>374</pcr_amplicon_size>
		<canonical_amplicon>GCAGTAATCAGAAAGAATGTGAATTCATATATAGAACATGAAAAGATAATAATAAATTATGGTTGTCCGAGATCCTTCAAGCTTCAGCCTGCGCAGTTTCTTCCTCCTCCCCTGCTTCTTCCTCTTCTCCAGCTTCTTCTCCTTGTCCCTCTTCCTCTTCATCGTCCTCCTCTTCCTCCTCATCATCCCCATCTTCCTCTCCATCAGCAATCACACCAGCATCACCTTCACCTTCCTCCTCTTCCTCATCCTCCCCTTCTGATTCATCCTCATCCATCTCCTCTTCTTCAACATCCGCTTCCATCTCCAACTCCAACTTTGGCGAACCGCCGCCACCTCGCTTGTTGATCGGTTTTCCATTCTGAAAAGTTTCT</canonical_amplicon>
		<polymorphic_amplicon>GCAGTAATCAGAAAGAATGTGAATTCATATATAGAACATGAAAAGATAATAATAAATTATGGTTKTCCGAGATCCTTCAAGCTTCAGCCTGCGCAGTTTCTTCCTCCTCCCCTGCTTCTTCCTCTTCTCCAGCTTCTTCTCCTTGTCCCTCTTCCTCTTCATCGTCCTCCTCTTCCTCCTCATCATCCCCATCTTCCTCTCCATCAGCAATCACACCAGCATCACCTTCACCTTCCTCCTCTTCCTCATCCTCCCCTTCTGATTCATCCTCATCCATCTCCTCTTCTTCAACATCCGCTTCCATCTCCAACTCCAACTTTGGCGAACCGCCGCCACCTCGCTTGTTGATCGGTTTTCCATTCTGAAAAGTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25768</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>439343</contig_pos>
        <strand></strand>
        <context>aatcccagaa[T/A]tctgtgaaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATCGAAAATTTCAGAATTTTTCGAAAAATTGGATTTTAAGAATCCCAGAA</left_flank>
        <right_flank>TCTGTGAAATTCGGATTTTAAAATTTTCGGCATTTCAGAAATTTTTGATT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAGCAAAAAAAAAATAAAACTTCATTAAGCCAAGGATGAAATTTTTTCTAAAAACGACCTCAAAACAGTTTTTTTTTTCGACAGAATCGTCCTCTAGTGTGGATTTTTATTTATTAAGGAGAAAAGCCATCTTGAAAAATGATGATTTGCTCTAAAATTTCGAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCGGTCCTGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGAAAAATATTTTATTATTACTTTGAAAAAAAAGAAAAAAATTAGTGGACAATAAAAAGAATCCAATTGTTGGAGGGATAATTTTCGGATTCTAAAAAATTCGGAATTTGAGAAAATGTCTATTTCGAAGAAATTACGGATTTTGAAATTTTCCGAATTCCCGAAAAGTCGGATTTTGAAAATTTCGTGAAATTCGGGCATCGAAAATTTCAGAATTTTTCGAAAAATTGGATTTTAAGAATCCCAGAATTCTGTGAAATTCGGATTTTAAAATTTTCGGCATTTCAGAAATTTTTGATTTTTTTGAAATTTTAGGGATTTCAAGGAAATTCAGTTTTTCGAAATTTCTTTAAACTCGGGTTTCGAATACTTAGGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTCAAACAAAACTTTATTCGGCAAAATATGATATA</canonical>
            <polymorphic>TTAGCAAAAAAAAAATAAAACTTCATTAAGCCAAGGATGAAATTTTTTCTAAAAACGACCTCAAAACAGTTTTTTTTTTCGACAGAATCGTCCTCTAGTGTGGATTTTTATTTATTAAGGAGAAAAGCCATCTTGAAAAATGATGATTTGCTCTAAAATTTCGAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCGGTCCTGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGAAAAATATTTTATTATTACTTTGAAAAAAAAGAAAAAAATTAGTGGACAATAAAAAGAATCCAATTGTTGGAGGGATAATTTTCGGATTCTAAAAAATTCGGAATTTGAGAAAATGTCTATTTCGAAGAAATTACGGATTTTGAAATTTTCCGAATTCCCGAAAAGTCGGATTTTGAAAATTTCGTGAAATTCGGGCATCGAAAATTTCAGAATTTTTCGAAAAATTGGATTTTAAGAATCCCAGAAWTCTGTGAAATTCGGATTTTAAAATTTTCGGCATTTCAGAAATTTTTGATTTTTTTGAAATTTTAGGGATTTCAAGGAAATTCAGTTTTTCGAAATTTCTTTAAACTCGGGTTTCGAATACTTAGGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTCAAACAAAACTTTATTCGGCAAAATATGATATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>208 183 116 82 48 42 40 38 34 32 25 20 18 18 15 15 14 10 10 9 8 8 7</canonical_bands>
                <polymorphic_bands>208 183 116 82 48 44 42 40 38 32 25 20 18 18 15 15 14 10 9 8 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>503 405 92</canonical_bands>
                <polymorphic_bands>595 405</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>128 116 96 80 48 48 40 38 34 29 27 25 25 22 20 18 18 18 15 15 15 15 14 13 12 11 10 10 9 8 8 8 7</canonical_bands>
                <polymorphic_bands>128 116 96 80 48 48 40 38 34 32 29 27 25 25 20 18 18 18 15 15 15 15 14 13 12 11 10 9 8 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGAATTTGAGAAAATGTCTA</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAATTTCGAAAAACTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGGAATTTGAGAAAATGTCTATTTCGAAGAAATTACGGATTTTGAAATTTTCCGAATTCCCGAAAAGTCGGATTTTGAAAATTTCGTGAAATTCGGGCATCGAAAATTTCAGAATTTTTCGAAAAATTGGATTTTAAGAATCCCAGAATTCTGTGAAATTCGGATTTTAAAATTTTCGGCATTTCAGAAATTTTTGATTTTTTTGAAATTTTAGGGATTTCAAGGAAATTCAGTTTTTCGAAATTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>CGGAATTTGAGAAAATGTCTATTTCGAAGAAATTACGGATTTTGAAATTTTCCGAATTCCCGAAAAGTCGGATTTTGAAAATTTCGTGAAATTCGGGCATCGAAAATTTCAGAATTTTTCGAAAAATTGGATTTTAAGAATCCCAGAAWTCTGTGAAATTCGGATTTTAAAATTTTCGGCATTTCAGAAATTTTTGATTTTTTTGAAATTTTAGGGATTTCAAGGAAATTCAGTTTTTCGAAATTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25769</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>439389</contig_pos>
        <strand>+</strand>
        <context>cagaaatttt[A/T]GATTTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAATTCTGTGAAATTCGGATTTTAAAATTTTCGGCATTTCAGAAATTTT</left_flank>
        <right_flank>GATTTTTTTGAAATTTTAGGGATTTCAAGGAAATTCAGTTTTTCGAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTAAAAACGACCTCAAAACAGTTTTTTTTTTCGACAGAATCGTCCTCTAGTGTGGATTTTTATTTATTAAGGAGAAAAGCCATCTTGAAAAATGATGATTTGCTCTAAAATTTCGAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCGGTCCTGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGAAAAATATTTTATTATTACTTTGAAAAAAAAGAAAAAAATTAGTGGACAATAAAAAGAATCCAATTGTTGGAGGGATAATTTTCGGATTCTAAAAAATTCGGAATTTGAGAAAATGTCTATTTCGAAGAAATTACGGATTTTGAAATTTTCCGAATTCCCGAAAAGTCGGATTTTGAAAATTTCGTGAAATTCGGGCATCGAAAATTTCAGAATTTTTCGAAAAATTGGATTTTAAGAATCCCAGAATTCTGTGAAATTCGGATTTTAAAATTTTCGGCATTTCAGAAATTTTTGATTTTTTTGAAATTTTAGGGATTTCAAGGAAATTCAGTTTTTCGAAATTTCTTTAAACTCGGGTTTCGAATACTTAGGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTCAAACAAAACTTTATTCGGCAAAATATGATATACAGTTTTTGTGAGGGGGGAATGGAGAAGAAGAAAACAGGAAACGAA</canonical>
            <polymorphic>TTCTAAAAACGACCTCAAAACAGTTTTTTTTTTCGACAGAATCGTCCTCTAGTGTGGATTTTTATTTATTAAGGAGAAAAGCCATCTTGAAAAATGATGATTTGCTCTAAAATTTCGAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCGGTCCTGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGAAAAATATTTTATTATTACTTTGAAAAAAAAGAAAAAAATTAGTGGACAATAAAAAGAATCCAATTGTTGGAGGGATAATTTTCGGATTCTAAAAAATTCGGAATTTGAGAAAATGTCTATTTCGAAGAAATTACGGATTTTGAAATTTTCCGAATTCCCGAAAAGTCGGATTTTGAAAATTTCGTGAAATTCGGGCATCGAAAATTTCAGAATTTTTCGAAAAATTGGATTTTAAGAATCCCAGAATTCTGTGAAATTCGGATTTTAAAATTTTCGGCATTTCAGAAATTTTWGATTTTTTTGAAATTTTAGGGATTTCAAGGAAATTCAGTTTTTCGAAATTTCTTTAAACTCGGGTTTCGAATACTTAGGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTCAAACAAAACTTTATTCGGCAAAATATGATATACAGTTTTTGTGAGGGGGGAATGGAGAAGAAGAAAACAGGAAACGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGAATTTGAGAAAATGTCTA</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAATTTCGAAAAACTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGGAATTTGAGAAAATGTCTATTTCGAAGAAATTACGGATTTTGAAATTTTCCGAATTCCCGAAAAGTCGGATTTTGAAAATTTCGTGAAATTCGGGCATCGAAAATTTCAGAATTTTTCGAAAAATTGGATTTTAAGAATCCCAGAATTCTGTGAAATTCGGATTTTAAAATTTTCGGCATTTCAGAAATTTTTGATTTTTTTGAAATTTTAGGGATTTCAAGGAAATTCAGTTTTTCGAAATTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>CGGAATTTGAGAAAATGTCTATTTCGAAGAAATTACGGATTTTGAAATTTTCCGAATTCCCGAAAAGTCGGATTTTGAAAATTTCGTGAAATTCGGGCATCGAAAATTTCAGAATTTTTCGAAAAATTGGATTTTAAGAATCCCAGAATTCTGTGAAATTCGGATTTTAAAATTTTCGGCATTTCAGAAATTTTWGATTTTTTTGAAATTTTAGGGATTTCAAGGAAATTCAGTTTTTCGAAATTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25770</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>439419</contig_pos>
        <strand></strand>
        <context>GGATTTCAAG[G/A]AAATTCAGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTCGGCATTTCAGAAATTTTTGATTTTTTTGAAATTTTAGGGATTTCAAG</left_flank>
        <right_flank>AAATTCAGTTTTTCGAAATTTCTTTAAACTCGGGTTTCGAATACTTAGGA</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGACAGAATCGTCCTCTAGTGTGGATTTTTATTTATTAAGGAGAAAAGCCATCTTGAAAAATGATGATTTGCTCTAAAATTTCGAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCGGTCCTGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGAAAAATATTTTATTATTACTTTGAAAAAAAAGAAAAAAATTAGTGGACAATAAAAAGAATCCAATTGTTGGAGGGATAATTTTCGGATTCTAAAAAATTCGGAATTTGAGAAAATGTCTATTTCGAAGAAATTACGGATTTTGAAATTTTCCGAATTCCCGAAAAGTCGGATTTTGAAAATTTCGTGAAATTCGGGCATCGAAAATTTCAGAATTTTTCGAAAAATTGGATTTTAAGAATCCCAGAATTCTGTGAAATTCGGATTTTAAAATTTTCGGCATTTCAGAAATTTTTGATTTTTTTGAAATTTTAGGGATTTCAAGGAAATTCAGTTTTTCGAAATTTCTTTAAACTCGGGTTTCGAATACTTAGGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTCAAACAAAACTTTATTCGGCAAAATATGATATACAGTTTTTGTGAGGGGGGAATGGAGAAGAAGAAAACAGGAAACGAAAATGGAATAACAGAAAGATTTTGTCGAATT</canonical>
            <polymorphic>TTTCGACAGAATCGTCCTCTAGTGTGGATTTTTATTTATTAAGGAGAAAAGCCATCTTGAAAAATGATGATTTGCTCTAAAATTTCGAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCGGTCCTGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGAAAAATATTTTATTATTACTTTGAAAAAAAAGAAAAAAATTAGTGGACAATAAAAAGAATCCAATTGTTGGAGGGATAATTTTCGGATTCTAAAAAATTCGGAATTTGAGAAAATGTCTATTTCGAAGAAATTACGGATTTTGAAATTTTCCGAATTCCCGAAAAGTCGGATTTTGAAAATTTCGTGAAATTCGGGCATCGAAAATTTCAGAATTTTTCGAAAAATTGGATTTTAAGAATCCCAGAATTCTGTGAAATTCGGATTTTAAAATTTTCGGCATTTCAGAAATTTTTGATTTTTTTGAAATTTTAGGGATTTCAAGRAAATTCAGTTTTTCGAAATTTCTTTAAACTCGGGTTTCGAATACTTAGGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTCAAACAAAACTTTATTCGGCAAAATATGATATACAGTTTTTGTGAGGGGGGAATGGAGAAGAAGAAAACAGGAAACGAAAATGGAATAACAGAAAGATTTTGTCGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTCTATTTCGAAGAAATTACG</pcr_primer_p1>
		<pcr_primer_p2>GAAATTTGTTTTGGATTGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>603</pcr_amplicon_size>
		<canonical_amplicon>ATGTCTATTTCGAAGAAATTACGGATTTTGAAATTTTCCGAATTCCCGAAAAGTCGGATTTTGAAAATTTCGTGAAATTCGGGCATCGAAAATTTCAGAATTTTTCGAAAAATTGGATTTTAAGAATCCCAGAATTCTGTGAAATTCGGATTTTAAAATTTTCGGCATTTCAGAAATTTTTGATTTTTTTGAAATTTTAGGGATTTCAAGGAAATTCAGTTTTTCGAAATTTCTTTAAACTCGGGTTTCGAATACTTAGGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTC</canonical_amplicon>
		<polymorphic_amplicon>ATGTCTATTTCGAAGAAATTACGGATTTTGAAATTTTCCGAATTCCCGAAAAGTCGGATTTTGAAAATTTCGTGAAATTCGGGCATCGAAAATTTCAGAATTTTTCGAAAAATTGGATTTTAAGAATCCCAGAATTCTGTGAAATTCGGATTTTAAAATTTTCGGCATTTCAGAAATTTTTGATTTTTTTGAAATTTTAGGGATTTCAAGRAAATTCAGTTTTTCGAAATTTCTTTAAACTCGGGTTTCGAATACTTAGGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25771</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>439466</contig_pos>
        <strand>+</strand>
        <context>TCGAATACTT[A/C]GGAAATTAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGGAAATTCAGTTTTTCGAAATTTCTTTAAACTCGGGTTTCGAATACTT</left_flank>
        <right_flank>GGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGCCATCTTGAAAAATGATGATTTGCTCTAAAATTTCGAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCGGTCCTGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGAAAAATATTTTATTATTACTTTGAAAAAAAAGAAAAAAATTAGTGGACAATAAAAAGAATCCAATTGTTGGAGGGATAATTTTCGGATTCTAAAAAATTCGGAATTTGAGAAAATGTCTATTTCGAAGAAATTACGGATTTTGAAATTTTCCGAATTCCCGAAAAGTCGGATTTTGAAAATTTCGTGAAATTCGGGCATCGAAAATTTCAGAATTTTTCGAAAAATTGGATTTTAAGAATCCCAGAATTCTGTGAAATTCGGATTTTAAAATTTTCGGCATTTCAGAAATTTTTGATTTTTTTGAAATTTTAGGGATTTCAAGGAAATTCAGTTTTTCGAAATTTCTTTAAACTCGGGTTTCGAATACTTAGGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTCAAACAAAACTTTATTCGGCAAAATATGATATACAGTTTTTGTGAGGGGGGAATGGAGAAGAAGAAAACAGGAAACGAAAATGGAATAACAGAAAGATTTTGTCGAATTCAAAAAAGAGAAAAGTTTTGTGATGGTTGGATGAGGTGTGATGTGCT</canonical>
            <polymorphic>AAAGCCATCTTGAAAAATGATGATTTGCTCTAAAATTTCGAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCGGTCCTGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGAAAAATATTTTATTATTACTTTGAAAAAAAAGAAAAAAATTAGTGGACAATAAAAAGAATCCAATTGTTGGAGGGATAATTTTCGGATTCTAAAAAATTCGGAATTTGAGAAAATGTCTATTTCGAAGAAATTACGGATTTTGAAATTTTCCGAATTCCCGAAAAGTCGGATTTTGAAAATTTCGTGAAATTCGGGCATCGAAAATTTCAGAATTTTTCGAAAAATTGGATTTTAAGAATCCCAGAATTCTGTGAAATTCGGATTTTAAAATTTTCGGCATTTCAGAAATTTTTGATTTTTTTGAAATTTTAGGGATTTCAAGGAAATTCAGTTTTTCGAAATTTCTTTAAACTCGGGTTTCGAATACTTMGGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTCAAACAAAACTTTATTCGGCAAAATATGATATACAGTTTTTGTGAGGGGGGAATGGAGAAGAAGAAAACAGGAAACGAAAATGGAATAACAGAAAGATTTTGTCGAATTCAAAAAAGAGAAAAGTTTTGTGATGGTTGGATGAGGTGTGATGTGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>497 460 43</canonical_bands>
                <polymorphic_bands>540 460</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTCTATTTCGAAGAAATTACG</pcr_primer_p1>
		<pcr_primer_p2>GAAATTTGTTTTGGATTGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>603</pcr_amplicon_size>
		<canonical_amplicon>ATGTCTATTTCGAAGAAATTACGGATTTTGAAATTTTCCGAATTCCCGAAAAGTCGGATTTTGAAAATTTCGTGAAATTCGGGCATCGAAAATTTCAGAATTTTTCGAAAAATTGGATTTTAAGAATCCCAGAATTCTGTGAAATTCGGATTTTAAAATTTTCGGCATTTCAGAAATTTTTGATTTTTTTGAAATTTTAGGGATTTCAAGGAAATTCAGTTTTTCGAAATTTCTTTAAACTCGGGTTTCGAATACTTAGGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTC</canonical_amplicon>
		<polymorphic_amplicon>ATGTCTATTTCGAAGAAATTACGGATTTTGAAATTTTCCGAATTCCCGAAAAGTCGGATTTTGAAAATTTCGTGAAATTCGGGCATCGAAAATTTCAGAATTTTTCGAAAAATTGGATTTTAAGAATCCCAGAATTCTGTGAAATTCGGATTTTAAAATTTTCGGCATTTCAGAAATTTTTGATTTTTTTGAAATTTTAGGGATTTCAAGGAAATTCAGTTTTTCGAAATTTCTTTAAACTCGGGTTTCGAATACTTMGGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25772</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>439492</contig_pos>
        <strand>+</strand>
        <context>GCTTATTTTA[C/G]GACTTTCAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTAAACTCGGGTTTCGAATACTTAGGAAATTAGGGAAGTGCTTATTTTA</left_flank>
        <right_flank>GACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCTAAAATTTCGAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCGGTCCTGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGAAAAATATTTTATTATTACTTTGAAAAAAAAGAAAAAAATTAGTGGACAATAAAAAGAATCCAATTGTTGGAGGGATAATTTTCGGATTCTAAAAAATTCGGAATTTGAGAAAATGTCTATTTCGAAGAAATTACGGATTTTGAAATTTTCCGAATTCCCGAAAAGTCGGATTTTGAAAATTTCGTGAAATTCGGGCATCGAAAATTTCAGAATTTTTCGAAAAATTGGATTTTAAGAATCCCAGAATTCTGTGAAATTCGGATTTTAAAATTTTCGGCATTTCAGAAATTTTTGATTTTTTTGAAATTTTAGGGATTTCAAGGAAATTCAGTTTTTCGAAATTTCTTTAAACTCGGGTTTCGAATACTTAGGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTCAAACAAAACTTTATTCGGCAAAATATGATATACAGTTTTTGTGAGGGGGGAATGGAGAAGAAGAAAACAGGAAACGAAAATGGAATAACAGAAAGATTTTGTCGAATTCAAAAAAGAGAAAAGTTTTGTGATGGTTGGATGAGGTGTGATGTGCTGCTCATTTTACTTCTTTCCAGACTTC</canonical>
            <polymorphic>GCTCTAAAATTTCGAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCGGTCCTGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGAAAAATATTTTATTATTACTTTGAAAAAAAAGAAAAAAATTAGTGGACAATAAAAAGAATCCAATTGTTGGAGGGATAATTTTCGGATTCTAAAAAATTCGGAATTTGAGAAAATGTCTATTTCGAAGAAATTACGGATTTTGAAATTTTCCGAATTCCCGAAAAGTCGGATTTTGAAAATTTCGTGAAATTCGGGCATCGAAAATTTCAGAATTTTTCGAAAAATTGGATTTTAAGAATCCCAGAATTCTGTGAAATTCGGATTTTAAAATTTTCGGCATTTCAGAAATTTTTGATTTTTTTGAAATTTTAGGGATTTCAAGGAAATTCAGTTTTTCGAAATTTCTTTAAACTCGGGTTTCGAATACTTAGGAAATTAGGGAAGTGCTTATTTTASGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTCAAACAAAACTTTATTCGGCAAAATATGATATACAGTTTTTGTGAGGGGGGAATGGAGAAGAAGAAAACAGGAAACGAAAATGGAATAACAGAAAGATTTTGTCGAATTCAAAAAAGAGAAAAGTTTTGTGATGGTTGGATGAGGTGTGATGTGCTGCTCATTTTACTTCTTTCCAGACTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCAGTTTTTCGAAATTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAATTTGTTTTGGATTGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>390</pcr_amplicon_size>
		<canonical_amplicon>ATTCAGTTTTTCGAAATTTCTTTAAACTCGGGTTTCGAATACTTAGGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTC</canonical_amplicon>
		<polymorphic_amplicon>ATTCAGTTTTTCGAAATTTCTTTAAACTCGGGTTTCGAATACTTAGGAAATTAGGGAAGTGCTTATTTTASGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25773</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>439512</contig_pos>
        <strand>+</strand>
        <context>AAAACTCAGA[C/T]TTTGAAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTTAGGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGA</left_flank>
        <right_flank>TTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCGGTCCTGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGAAAAATATTTTATTATTACTTTGAAAAAAAAGAAAAAAATTAGTGGACAATAAAAAGAATCCAATTGTTGGAGGGATAATTTTCGGATTCTAAAAAATTCGGAATTTGAGAAAATGTCTATTTCGAAGAAATTACGGATTTTGAAATTTTCCGAATTCCCGAAAAGTCGGATTTTGAAAATTTCGTGAAATTCGGGCATCGAAAATTTCAGAATTTTTCGAAAAATTGGATTTTAAGAATCCCAGAATTCTGTGAAATTCGGATTTTAAAATTTTCGGCATTTCAGAAATTTTTGATTTTTTTGAAATTTTAGGGATTTCAAGGAAATTCAGTTTTTCGAAATTTCTTTAAACTCGGGTTTCGAATACTTAGGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTCAAACAAAACTTTATTCGGCAAAATATGATATACAGTTTTTGTGAGGGGGGAATGGAGAAGAAGAAAACAGGAAACGAAAATGGAATAACAGAAAGATTTTGTCGAATTCAAAAAAGAGAAAAGTTTTGTGATGGTTGGATGAGGTGTGATGTGCTGCTCATTTTACTTCTTTCCAGACTTCTTGATTCCTCCTCCGACTGA</canonical>
            <polymorphic>TCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCGGTCCTGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGAAAAATATTTTATTATTACTTTGAAAAAAAAGAAAAAAATTAGTGGACAATAAAAAGAATCCAATTGTTGGAGGGATAATTTTCGGATTCTAAAAAATTCGGAATTTGAGAAAATGTCTATTTCGAAGAAATTACGGATTTTGAAATTTTCCGAATTCCCGAAAAGTCGGATTTTGAAAATTTCGTGAAATTCGGGCATCGAAAATTTCAGAATTTTTCGAAAAATTGGATTTTAAGAATCCCAGAATTCTGTGAAATTCGGATTTTAAAATTTTCGGCATTTCAGAAATTTTTGATTTTTTTGAAATTTTAGGGATTTCAAGGAAATTCAGTTTTTCGAAATTTCTTTAAACTCGGGTTTCGAATACTTAGGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGAYTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTCAAACAAAACTTTATTCGGCAAAATATGATATACAGTTTTTGTGAGGGGGGAATGGAGAAGAAGAAAACAGGAAACGAAAATGGAATAACAGAAAGATTTTGTCGAATTCAAAAAAGAGAAAAGTTTTGTGATGGTTGGATGAGGTGTGATGTGCTGCTCATTTTACTTCTTTCCAGACTTCTTGATTCCTCCTCCGACTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTCGGGTTTCGAATACTT</pcr_primer_p1>
		<pcr_primer_p2>GAAATTTGTTTTGGATTGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>366</pcr_amplicon_size>
		<canonical_amplicon>AACTCGGGTTTCGAATACTTAGGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTC</canonical_amplicon>
		<polymorphic_amplicon>AACTCGGGTTTCGAATACTTAGGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGAYTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25774</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>439527</contig_pos>
        <strand>+</strand>
        <context>AAATTTTATA[A/T]TTTGAACAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATA</left_flank>
        <right_flank>TTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCATGTGTAATTTTTTCCGGCCCGGCCCGGTCCTGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGAAAAATATTTTATTATTACTTTGAAAAAAAAGAAAAAAATTAGTGGACAATAAAAAGAATCCAATTGTTGGAGGGATAATTTTCGGATTCTAAAAAATTCGGAATTTGAGAAAATGTCTATTTCGAAGAAATTACGGATTTTGAAATTTTCCGAATTCCCGAAAAGTCGGATTTTGAAAATTTCGTGAAATTCGGGCATCGAAAATTTCAGAATTTTTCGAAAAATTGGATTTTAAGAATCCCAGAATTCTGTGAAATTCGGATTTTAAAATTTTCGGCATTTCAGAAATTTTTGATTTTTTTGAAATTTTAGGGATTTCAAGGAAATTCAGTTTTTCGAAATTTCTTTAAACTCGGGTTTCGAATACTTAGGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTCAAACAAAACTTTATTCGGCAAAATATGATATACAGTTTTTGTGAGGGGGGAATGGAGAAGAAGAAAACAGGAAACGAAAATGGAATAACAGAAAGATTTTGTCGAATTCAAAAAAGAGAAAAGTTTTGTGATGGTTGGATGAGGTGTGATGTGCTGCTCATTTTACTTCTTTCCAGACTTCTTGATTCCTCCTCCGACTGAAAATATGAACATTTC</canonical>
            <polymorphic>GCCATGTGTAATTTTTTCCGGCCCGGCCCGGTCCTGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGAAAAATATTTTATTATTACTTTGAAAAAAAAGAAAAAAATTAGTGGACAATAAAAAGAATCCAATTGTTGGAGGGATAATTTTCGGATTCTAAAAAATTCGGAATTTGAGAAAATGTCTATTTCGAAGAAATTACGGATTTTGAAATTTTCCGAATTCCCGAAAAGTCGGATTTTGAAAATTTCGTGAAATTCGGGCATCGAAAATTTCAGAATTTTTCGAAAAATTGGATTTTAAGAATCCCAGAATTCTGTGAAATTCGGATTTTAAAATTTTCGGCATTTCAGAAATTTTTGATTTTTTTGAAATTTTAGGGATTTCAAGGAAATTCAGTTTTTCGAAATTTCTTTAAACTCGGGTTTCGAATACTTAGGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAWTTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTCAAACAAAACTTTATTCGGCAAAATATGATATACAGTTTTTGTGAGGGGGGAATGGAGAAGAAGAAAACAGGAAACGAAAATGGAATAACAGAAAGATTTTGTCGAATTCAAAAAAGAGAAAAGTTTTGTGATGGTTGGATGAGGTGTGATGTGCTGCTCATTTTACTTCTTTCCAGACTTCTTGATTCCTCCTCCGACTGAAAATATGAACATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>128 112 110 96 80 48 48 34 27 25 25 22 20 18 18 18 15 15 15 15 14 13 12 11 10 10 9 9 8 8 7</canonical_bands>
                <polymorphic_bands>128 112 110 96 80 48 48 34 27 25 25 22 20 19 18 18 18 15 15 15 15 14 13 12 10 10 9 9 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAATTAGGGAAGTGCTTAT</pcr_primer_p1>
		<pcr_primer_p2>GAAATTTGTTTTGGATTGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>345</pcr_amplicon_size>
		<canonical_amplicon>GGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTC</canonical_amplicon>
		<polymorphic_amplicon>GGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAWTTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25775</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>439551</contig_pos>
        <strand>+</strand>
        <context>AGAGACATAA[A/T]TTTGAAATac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAA</left_flank>
        <right_flank>TTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCCCGGTCCTGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGAAAAATATTTTATTATTACTTTGAAAAAAAAGAAAAAAATTAGTGGACAATAAAAAGAATCCAATTGTTGGAGGGATAATTTTCGGATTCTAAAAAATTCGGAATTTGAGAAAATGTCTATTTCGAAGAAATTACGGATTTTGAAATTTTCCGAATTCCCGAAAAGTCGGATTTTGAAAATTTCGTGAAATTCGGGCATCGAAAATTTCAGAATTTTTCGAAAAATTGGATTTTAAGAATCCCAGAATTCTGTGAAATTCGGATTTTAAAATTTTCGGCATTTCAGAAATTTTTGATTTTTTTGAAATTTTAGGGATTTCAAGGAAATTCAGTTTTTCGAAATTTCTTTAAACTCGGGTTTCGAATACTTAGGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTCAAACAAAACTTTATTCGGCAAAATATGATATACAGTTTTTGTGAGGGGGGAATGGAGAAGAAGAAAACAGGAAACGAAAATGGAATAACAGAAAGATTTTGTCGAATTCAAAAAAGAGAAAAGTTTTGTGATGGTTGGATGAGGTGTGATGTGCTGCTCATTTTACTTCTTTCCAGACTTCTTGATTCCTCCTCCGACTGAAAATATGAACATTTCGCTATGAAGCATGTCATTGGCATA</canonical>
            <polymorphic>GGCCCGGTCCTGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGAAAAATATTTTATTATTACTTTGAAAAAAAAGAAAAAAATTAGTGGACAATAAAAAGAATCCAATTGTTGGAGGGATAATTTTCGGATTCTAAAAAATTCGGAATTTGAGAAAATGTCTATTTCGAAGAAATTACGGATTTTGAAATTTTCCGAATTCCCGAAAAGTCGGATTTTGAAAATTTCGTGAAATTCGGGCATCGAAAATTTCAGAATTTTTCGAAAAATTGGATTTTAAGAATCCCAGAATTCTGTGAAATTCGGATTTTAAAATTTTCGGCATTTCAGAAATTTTTGATTTTTTTGAAATTTTAGGGATTTCAAGGAAATTCAGTTTTTCGAAATTTCTTTAAACTCGGGTTTCGAATACTTAGGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAWTTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTCAAACAAAACTTTATTCGGCAAAATATGATATACAGTTTTTGTGAGGGGGGAATGGAGAAGAAGAAAACAGGAAACGAAAATGGAATAACAGAAAGATTTTGTCGAATTCAAAAAAGAGAAAAGTTTTGTGATGGTTGGATGAGGTGTGATGTGCTGCTCATTTTACTTCTTTCCAGACTTCTTGATTCCTCCTCCGACTGAAAATATGAACATTTCGCTATGAAGCATGTCATTGGCATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>208 139 136 110 82 48 42 34 32 25 20 18 18 15 15 14 10 10 9 8 7</canonical_bands>
                <polymorphic_bands>208 139 136 110 82 80 42 34 25 20 18 18 15 15 14 10 10 9 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>136 128 110 81 80 48 48 34 27 25 25 22 20 18 18 18 15 15 15 15 14 13 12 11 10 10 9 8 8 7</canonical_bands>
                <polymorphic_bands>136 128 110 81 80 61 48 34 27 25 25 22 20 18 18 18 15 15 15 15 14 12 11 10 10 9 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAATTAGGGAAGTGCTTAT</pcr_primer_p1>
		<pcr_primer_p2>GAAATTTGTTTTGGATTGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>345</pcr_amplicon_size>
		<canonical_amplicon>GGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTC</canonical_amplicon>
		<polymorphic_amplicon>GGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAWTTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25776</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>439710</contig_pos>
        <strand></strand>
        <context>ttttgatctt[C/T]tataggaacc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTT</left_flank>
        <right_flank>TATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCTATTTCGAAGAAATTACGGATTTTGAAATTTTCCGAATTCCCGAAAAGTCGGATTTTGAAAATTTCGTGAAATTCGGGCATCGAAAATTTCAGAATTTTTCGAAAAATTGGATTTTAAGAATCCCAGAATTCTGTGAAATTCGGATTTTAAAATTTTCGGCATTTCAGAAATTTTTGATTTTTTTGAAATTTTAGGGATTTCAAGGAAATTCAGTTTTTCGAAATTTCTTTAAACTCGGGTTTCGAATACTTAGGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTCAAACAAAACTTTATTCGGCAAAATATGATATACAGTTTTTGTGAGGGGGGAATGGAGAAGAAGAAAACAGGAAACGAAAATGGAATAACAGAAAGATTTTGTCGAATTCAAAAAAGAGAAAAGTTTTGTGATGGTTGGATGAGGTGTGATGTGCTGCTCATTTTACTTCTTTCCAGACTTCTTGATTCCTCCTCCGACTGAAAATATGAACATTTCGCTATGAAGCATGTCATTGGCATATACCGTAAAACCTGTATTAGAAGGACTTCTCTAATAGTGGGACCTTTCTATTAAAAGGGCCCTCCGGAAGCACCTTGGAACAAAAGAAGGGCCGGCCCATCTAAGACAGGTTTTACGGCATGTGTTATTTTTGGGAAATTTGTATGTTTGGAGATTTTT</canonical>
            <polymorphic>GTCTATTTCGAAGAAATTACGGATTTTGAAATTTTCCGAATTCCCGAAAAGTCGGATTTTGAAAATTTCGTGAAATTCGGGCATCGAAAATTTCAGAATTTTTCGAAAAATTGGATTTTAAGAATCCCAGAATTCTGTGAAATTCGGATTTTAAAATTTTCGGCATTTCAGAAATTTTTGATTTTTTTGAAATTTTAGGGATTTCAAGGAAATTCAGTTTTTCGAAATTTCTTTAAACTCGGGTTTCGAATACTTAGGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTYTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTCAAACAAAACTTTATTCGGCAAAATATGATATACAGTTTTTGTGAGGGGGGAATGGAGAAGAAGAAAACAGGAAACGAAAATGGAATAACAGAAAGATTTTGTCGAATTCAAAAAAGAGAAAAGTTTTGTGATGGTTGGATGAGGTGTGATGTGCTGCTCATTTTACTTCTTTCCAGACTTCTTGATTCCTCCTCCGACTGAAAATATGAACATTTCGCTATGAAGCATGTCATTGGCATATACCGTAAAACCTGTATTAGAAGGACTTCTCTAATAGTGGGACCTTTCTATTAAAAGGGCCCTCCGGAAGCACCTTGGAACAAAAGAAGGGCCGGCCCATCTAAGACAGGTTTTACGGCATGTGTTATTTTTGGGAAATTTGTATGTTTGGAGATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAATTAGGGAAGTGCTTAT</pcr_primer_p1>
		<pcr_primer_p2>GAAATTTGTTTTGGATTGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>345</pcr_amplicon_size>
		<canonical_amplicon>GGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTC</canonical_amplicon>
		<polymorphic_amplicon>GGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTYTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25777</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>439747</contig_pos>
        <strand></strand>
        <context>aagtggacgg[T/C]ccgggtggcg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGG</left_flank>
        <right_flank>CCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTCCCGAAAAGTCGGATTTTGAAAATTTCGTGAAATTCGGGCATCGAAAATTTCAGAATTTTTCGAAAAATTGGATTTTAAGAATCCCAGAATTCTGTGAAATTCGGATTTTAAAATTTTCGGCATTTCAGAAATTTTTGATTTTTTTGAAATTTTAGGGATTTCAAGGAAATTCAGTTTTTCGAAATTTCTTTAAACTCGGGTTTCGAATACTTAGGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTCAAACAAAACTTTATTCGGCAAAATATGATATACAGTTTTTGTGAGGGGGGAATGGAGAAGAAGAAAACAGGAAACGAAAATGGAATAACAGAAAGATTTTGTCGAATTCAAAAAAGAGAAAAGTTTTGTGATGGTTGGATGAGGTGTGATGTGCTGCTCATTTTACTTCTTTCCAGACTTCTTGATTCCTCCTCCGACTGAAAATATGAACATTTCGCTATGAAGCATGTCATTGGCATATACCGTAAAACCTGTATTAGAAGGACTTCTCTAATAGTGGGACCTTTCTATTAAAAGGGCCCTCCGGAAGCACCTTGGAACAAAAGAAGGGCCGGCCCATCTAAGACAGGTTTTACGGCATGTGTTATTTTTGGGAAATTTGTATGTTTGGAGATTTTTGAGGTCGAAAAAATTGGTTTTTGTATTCCAAATCCTC</canonical>
            <polymorphic>GAATTCCCGAAAAGTCGGATTTTGAAAATTTCGTGAAATTCGGGCATCGAAAATTTCAGAATTTTTCGAAAAATTGGATTTTAAGAATCCCAGAATTCTGTGAAATTCGGATTTTAAAATTTTCGGCATTTCAGAAATTTTTGATTTTTTTGAAATTTTAGGGATTTCAAGGAAATTCAGTTTTTCGAAATTTCTTTAAACTCGGGTTTCGAATACTTAGGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGYCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTCAAACAAAACTTTATTCGGCAAAATATGATATACAGTTTTTGTGAGGGGGGAATGGAGAAGAAGAAAACAGGAAACGAAAATGGAATAACAGAAAGATTTTGTCGAATTCAAAAAAGAGAAAAGTTTTGTGATGGTTGGATGAGGTGTGATGTGCTGCTCATTTTACTTCTTTCCAGACTTCTTGATTCCTCCTCCGACTGAAAATATGAACATTTCGCTATGAAGCATGTCATTGGCATATACCGTAAAACCTGTATTAGAAGGACTTCTCTAATAGTGGGACCTTTCTATTAAAAGGGCCCTCCGGAAGCACCTTGGAACAAAAGAAGGGCCGGCCCATCTAAGACAGGTTTTACGGCATGTGTTATTTTTGGGAAATTTGTATGTTTGGAGATTTTTGAGGTCGAAAAAATTGGTTTTTGTATTCCAAATCCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>498 346 156</canonical_bands>
                <polymorphic_bands>844 156</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>315 210 192 183 69 31</canonical_bands>
                <polymorphic_bands>315 214 210 192 69</polymorphic_bands>
            </assay>
            <assay>
                <site>CGGWCCG</site>
                <isoschizomers>
                    <enzyme>CpoI</enzyme>
                    <enzyme>CspI</enzyme>
                    <enzyme>Rsr2I</enzyme>
                    <enzyme>RsrII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAATTAGGGAAGTGCTTAT</pcr_primer_p1>
		<pcr_primer_p2>GAAATTTGTTTTGGATTGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>345</pcr_amplicon_size>
		<canonical_amplicon>GGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTC</canonical_amplicon>
		<polymorphic_amplicon>GGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGYCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25778</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>439779</contig_pos>
        <strand>+</strand>
        <context>tgtttacggt[A/G]TTCTATAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGT</left_flank>
        <right_flank>TTCTATAAATATTTCAATCCAAAACAAATTTCAAACAAAACTTTATTCGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGAAATTCGGGCATCGAAAATTTCAGAATTTTTCGAAAAATTGGATTTTAAGAATCCCAGAATTCTGTGAAATTCGGATTTTAAAATTTTCGGCATTTCAGAAATTTTTGATTTTTTTGAAATTTTAGGGATTTCAAGGAAATTCAGTTTTTCGAAATTTCTTTAAACTCGGGTTTCGAATACTTAGGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTCAAACAAAACTTTATTCGGCAAAATATGATATACAGTTTTTGTGAGGGGGGAATGGAGAAGAAGAAAACAGGAAACGAAAATGGAATAACAGAAAGATTTTGTCGAATTCAAAAAAGAGAAAAGTTTTGTGATGGTTGGATGAGGTGTGATGTGCTGCTCATTTTACTTCTTTCCAGACTTCTTGATTCCTCCTCCGACTGAAAATATGAACATTTCGCTATGAAGCATGTCATTGGCATATACCGTAAAACCTGTATTAGAAGGACTTCTCTAATAGTGGGACCTTTCTATTAAAAGGGCCCTCCGGAAGCACCTTGGAACAAAAGAAGGGCCGGCCCATCTAAGACAGGTTTTACGGCATGTGTTATTTTTGGGAAATTTGTATGTTTGGAGATTTTTGAGGTCGAAAAAATTGGTTTTTGTATTCCAAATCCTCTCATCTATGATCCATTGAGAAGAAACTCACGA</canonical>
            <polymorphic>GTGAAATTCGGGCATCGAAAATTTCAGAATTTTTCGAAAAATTGGATTTTAAGAATCCCAGAATTCTGTGAAATTCGGATTTTAAAATTTTCGGCATTTCAGAAATTTTTGATTTTTTTGAAATTTTAGGGATTTCAAGGAAATTCAGTTTTTCGAAATTTCTTTAAACTCGGGTTTCGAATACTTAGGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTRTTCTATAAATATTTCAATCCAAAACAAATTTCAAACAAAACTTTATTCGGCAAAATATGATATACAGTTTTTGTGAGGGGGGAATGGAGAAGAAGAAAACAGGAAACGAAAATGGAATAACAGAAAGATTTTGTCGAATTCAAAAAAGAGAAAAGTTTTGTGATGGTTGGATGAGGTGTGATGTGCTGCTCATTTTACTTCTTTCCAGACTTCTTGATTCCTCCTCCGACTGAAAATATGAACATTTCGCTATGAAGCATGTCATTGGCATATACCGTAAAACCTGTATTAGAAGGACTTCTCTAATAGTGGGACCTTTCTATTAAAAGGGCCCTCCGGAAGCACCTTGGAACAAAAGAAGGGCCGGCCCATCTAAGACAGGTTTTACGGCATGTGTTATTTTTGGGAAATTTGTATGTTTGGAGATTTTTGAGGTCGAAAAAATTGGTTTTTGTATTCCAAATCCTCTCATCTATGATCCATTGAGAAGAAACTCACGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>133 126 101 87 87 81 75 75 67 52 33 16 16 16 13 9 5 3 3 2</canonical_bands>
                <polymorphic_bands>133 126 101 87 87 84 81 75 67 52 33 16 16 16 13 5 3 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAATTAGGGAAGTGCTTATT</pcr_primer_p1>
		<pcr_primer_p2>TATTTTGCCGAATAAAGTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>370</pcr_amplicon_size>
		<canonical_amplicon>GGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTCAAACAAAACTTTATTCGGCAAAATA</canonical_amplicon>
		<polymorphic_amplicon>GGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTRTTCTATAAATATTTCAATCCAAAACAAATTTCAAACAAAACTTTATTCGGCAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25779</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>439895</contig_pos>
        <strand>+</strand>
        <context>ACGAAAATGG[A/G]ATAACAGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTTTTGTGAGGGGGGAATGGAGAAGAAGAAAACAGGAAACGAAAATGG</left_flank>
        <right_flank>ATAACAGAAAGATTTTGTCGAATTCAAAAAAGAGAAAAGTTTTGTGATGG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAAATTTTAGGGATTTCAAGGAAATTCAGTTTTTCGAAATTTCTTTAAACTCGGGTTTCGAATACTTAGGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTCAAACAAAACTTTATTCGGCAAAATATGATATACAGTTTTTGTGAGGGGGGAATGGAGAAGAAGAAAACAGGAAACGAAAATGGAATAACAGAAAGATTTTGTCGAATTCAAAAAAGAGAAAAGTTTTGTGATGGTTGGATGAGGTGTGATGTGCTGCTCATTTTACTTCTTTCCAGACTTCTTGATTCCTCCTCCGACTGAAAATATGAACATTTCGCTATGAAGCATGTCATTGGCATATACCGTAAAACCTGTATTAGAAGGACTTCTCTAATAGTGGGACCTTTCTATTAAAAGGGCCCTCCGGAAGCACCTTGGAACAAAAGAAGGGCCGGCCCATCTAAGACAGGTTTTACGGCATGTGTTATTTTTGGGAAATTTGTATGTTTGGAGATTTTTGAGGTCGAAAAAATTGGTTTTTGTATTCCAAATCCTCTCATCTATGATCCATTGAGAAGAAACTCACGAAGTGGTCCACGCTGGCCAGCCTTGGCTGCCATCTCCTTGATCTTCTTGGCCTCCTCCTGCTGCTTCTTCTTGAACTCGACATCTTCCTGAAAAAAAACCCCGGATGTTCACTTCGC</canonical>
            <polymorphic>TTTGAAATTTTAGGGATTTCAAGGAAATTCAGTTTTTCGAAATTTCTTTAAACTCGGGTTTCGAATACTTAGGAAATTAGGGAAGTGCTTATTTTAGGACTTTCAGAAAACTCAGATTTTGAAATTTTATAATTTGAACAGAATTAGAGACATAAATTTGAAATACCGTAAACACTCTAATAGAACGCCATCCGAATCGTTAAATTTGAGCCCATGTATCTCATTTTCTGTAAAAGATATCAAATAGTGGTTAACTATAAAAGTGTTGCTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATCTTCTATAGGAACCGAGATAATTGAGCTCAAAGTGGACGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTGTTCTATAAATATTTCAATCCAAAACAAATTTCAAACAAAACTTTATTCGGCAAAATATGATATACAGTTTTTGTGAGGGGGGAATGGAGAAGAAGAAAACAGGAAACGAAAATGGRATAACAGAAAGATTTTGTCGAATTCAAAAAAGAGAAAAGTTTTGTGATGGTTGGATGAGGTGTGATGTGCTGCTCATTTTACTTCTTTCCAGACTTCTTGATTCCTCCTCCGACTGAAAATATGAACATTTCGCTATGAAGCATGTCATTGGCATATACCGTAAAACCTGTATTAGAAGGACTTCTCTAATAGTGGGACCTTTCTATTAAAAGGGCCCTCCGGAAGCACCTTGGAACAAAAGAAGGGCCGGCCCATCTAAGACAGGTTTTACGGCATGTGTTATTTTTGGGAAATTTGTATGTTTGGAGATTTTTGAGGTCGAAAAAATTGGTTTTTGTATTCCAAATCCTCTCATCTATGATCCATTGAGAAGAAACTCACGAAGTGGTCCACGCTGGCCAGCCTTGGCTGCCATCTCCTTGATCTTCTTGGCCTCCTCCTGCTGCTTCTTCTTGAACTCGACATCTTCCTGAAAAAAAACCCCGGATGTTCACTTCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAACAAATTTCAAACAAAACT</pcr_primer_p1>
		<pcr_primer_p2>ATAGCGAAATGTTCATATTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>CAAAACAAATTTCAAACAAAACTTTATTCGGCAAAATATGATATACAGTTTTTGTGAGGGGGGAATGGAGAAGAAGAAAACAGGAAACGAAAATGGAATAACAGAAAGATTTTGTCGAATTCAAAAAAGAGAAAAGTTTTGTGATGGTTGGATGAGGTGTGATGTGCTGCTCATTTTACTTCTTTCCAGACTTCTTGATTCCTCCTCCGACTGAAAATATGAACATTTCGCTAT</canonical_amplicon>
		<polymorphic_amplicon>CAAAACAAATTTCAAACAAAACTTTATTCGGCAAAATATGATATACAGTTTTTGTGAGGGGGGAATGGAGAAGAAGAAAACAGGAAACGAAAATGGRATAACAGAAAGATTTTGTCGAATTCAAAAAAGAGAAAAGTTTTGTGATGGTTGGATGAGGTGTGATGTGCTGCTCATTTTACTTCTTTCCAGACTTCTTGATTCCTCCTCCGACTGAAAATATGAACATTTCGCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25780</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>450200</contig_pos>
        <strand>+</strand>
        <context>CTTTAAAGTT[C/G]GTAWTAGGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTT</left_flank>
        <right_flank>GTAATAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGGAGAAAAATTCAAATAAATGCTTAAAGGGGGACACCGACCAATTACATTTCATGTTTTTTGATACATCAAAATGTGTAGGAAGATATGTATATTCATATAGCAACGAACAGAAAATTGCAAAACCTCGAAAAATCGCCTCAAAAAGCGGAAAAATCTCAGTTCTCGTCAATTCTTAGAAACTTCGGAAATTTTCGGGAACTGTTTTTAAATTACCGCCAAAACTGAAAACTCTAAACCATCAAGGAATCTAAAATTAGTGTCGTAAATGAAAAACGGAGAGTTTTCAGTTTTTGTAAGAATTCGAGAGAAAAAAGATTCAAGAAACTCGCAGAAGTTTCCAGAAATAGACGAGAAGGAGATTTTTTGCAATTTGAAGATATTTTTTCAAGTTTTTGTCAATTTTCCTGAGGGTTTACTTTGATTCCATGTGAATCTACACATTTTTCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTCGTAATAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAA</canonical>
            <polymorphic>TAGGGAGAAAAATTCAAATAAATGCTTAAAGGGGGACACCGACCAATTACATTTCATGTTTTTTGATACATCAAAATGTGTAGGAAGATATGTATATTCATATAGCAACGAACAGAAAATTGCAAAACCTCGAAAAATCGCCTCAAAAAGCGGAAAAATCTCAGTTCTCGTCAATTCTTAGAAACTTCGGAAATTTTCGGGAACTGTTTTTAAATTACCGCCAAAACTGAAAACTCTAAACCATCAAGGAATCTAAAATTAGTGTCGTAAATGAAAAACGGAGAGTTTTCAGTTTTTGTAAGAATTCGAGAGAAAAAAGATTCAAGAAACTCGCAGAAGTTTCCAGAAATAGACGAGAAGGAGATTTTTTGCAATTTGAAGATATTTTTTCAAGTTTTTGTCAATTTTCCTGAGGGTTTACTTTGATTCCATGTGAATCTACACATTTTTCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTSGTAATAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCATGTGAATCTACACATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCAGCTTAAACTTGACCAGAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTCCATGTGAATCTACACATTTTTCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTCGTAATAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAA</canonical_amplicon>
		<polymorphic_amplicon>TTCCATGTGAATCTACACATTTTTCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTSGTAATAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25781</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>450204</contig_pos>
        <strand>+</strand>
        <context>AAAGTTSGTA[A/T]TAGGTTTCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTCGTA</left_flank>
        <right_flank>TAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAAAAATTCAAATAAATGCTTAAAGGGGGACACCGACCAATTACATTTCATGTTTTTTGATACATCAAAATGTGTAGGAAGATATGTATATTCATATAGCAACGAACAGAAAATTGCAAAACCTCGAAAAATCGCCTCAAAAAGCGGAAAAATCTCAGTTCTCGTCAATTCTTAGAAACTTCGGAAATTTTCGGGAACTGTTTTTAAATTACCGCCAAAACTGAAAACTCTAAACCATCAAGGAATCTAAAATTAGTGTCGTAAATGAAAAACGGAGAGTTTTCAGTTTTTGTAAGAATTCGAGAGAAAAAAGATTCAAGAAACTCGCAGAAGTTTCCAGAAATAGACGAGAAGGAGATTTTTTGCAATTTGAAGATATTTTTTCAAGTTTTTGTCAATTTTCCTGAGGGTTTACTTTGATTCCATGTGAATCTACACATTTTTCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTCGTAATAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAACCAA</canonical>
            <polymorphic>GAGAAAAATTCAAATAAATGCTTAAAGGGGGACACCGACCAATTACATTTCATGTTTTTTGATACATCAAAATGTGTAGGAAGATATGTATATTCATATAGCAACGAACAGAAAATTGCAAAACCTCGAAAAATCGCCTCAAAAAGCGGAAAAATCTCAGTTCTCGTCAATTCTTAGAAACTTCGGAAATTTTCGGGAACTGTTTTTAAATTACCGCCAAAACTGAAAACTCTAAACCATCAAGGAATCTAAAATTAGTGTCGTAAATGAAAAACGGAGAGTTTTCAGTTTTTGTAAGAATTCGAGAGAAAAAAGATTCAAGAAACTCGCAGAAGTTTCCAGAAATAGACGAGAAGGAGATTTTTTGCAATTTGAAGATATTTTTTCAAGTTTTTGTCAATTTTCCTGAGGGTTTACTTTGATTCCATGTGAATCTACACATTTTTCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTCGTAWTAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAACCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCATGTGAATCTACACATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCAGCTTAAACTTGACCAGAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTCCATGTGAATCTACACATTTTTCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTCGTAATAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAA</canonical_amplicon>
		<polymorphic_amplicon>TTCCATGTGAATCTACACATTTTTCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTCGTAWTAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25782</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>450250</contig_pos>
        <strand>+</strand>
        <context>AAATTTTTGA[A/C]ATTTTGAACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGTAATAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGA</left_flank>
        <right_flank>ATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCATGTTTTTTGATACATCAAAATGTGTAGGAAGATATGTATATTCATATAGCAACGAACAGAAAATTGCAAAACCTCGAAAAATCGCCTCAAAAAGCGGAAAAATCTCAGTTCTCGTCAATTCTTAGAAACTTCGGAAATTTTCGGGAACTGTTTTTAAATTACCGCCAAAACTGAAAACTCTAAACCATCAAGGAATCTAAAATTAGTGTCGTAAATGAAAAACGGAGAGTTTTCAGTTTTTGTAAGAATTCGAGAGAAAAAAGATTCAAGAAACTCGCAGAAGTTTCCAGAAATAGACGAGAAGGAGATTTTTTGCAATTTGAAGATATTTTTTCAAGTTTTTGTCAATTTTCCTGAGGGTTTACTTTGATTCCATGTGAATCTACACATTTTTCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTCGTAATAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAG</canonical>
            <polymorphic>ATTTCATGTTTTTTGATACATCAAAATGTGTAGGAAGATATGTATATTCATATAGCAACGAACAGAAAATTGCAAAACCTCGAAAAATCGCCTCAAAAAGCGGAAAAATCTCAGTTCTCGTCAATTCTTAGAAACTTCGGAAATTTTCGGGAACTGTTTTTAAATTACCGCCAAAACTGAAAACTCTAAACCATCAAGGAATCTAAAATTAGTGTCGTAAATGAAAAACGGAGAGTTTTCAGTTTTTGTAAGAATTCGAGAGAAAAAAGATTCAAGAAACTCGCAGAAGTTTCCAGAAATAGACGAGAAGGAGATTTTTTGCAATTTGAAGATATTTTTTCAAGTTTTTGTCAATTTTCCTGAGGGTTTACTTTGATTCCATGTGAATCTACACATTTTTCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTCGTAATAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAMATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>238 200 154 141 111 104 34 9 9</canonical_bands>
                <polymorphic_bands>238 200 163 141 111 104 34 9</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>120 106 78 70 70 68 67 55 46 44 43 37 30 21 21 19 19 17 15 13 10 9 9 9 4</canonical_bands>
                <polymorphic_bands>120 106 78 70 70 68 67 55 46 44 43 37 30 30 21 19 19 17 15 13 10 9 9 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCATGTGAATCTACACATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCAGCTTAAACTTGACCAGAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTCCATGTGAATCTACACATTTTTCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTCGTAATAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAA</canonical_amplicon>
		<polymorphic_amplicon>TTCCATGTGAATCTACACATTTTTCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTCGTAATAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAMATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25783</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>450372</contig_pos>
        <strand></strand>
        <context>AAGCTGAAAA[T/C]YYYAGACATC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAA</left_flank>
        <right_flank>GCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCTTAGAAACTTCGGAAATTTTCGGGAACTGTTTTTAAATTACCGCCAAAACTGAAAACTCTAAACCATCAAGGAATCTAAAATTAGTGTCGTAAATGAAAAACGGAGAGTTTTCAGTTTTTGTAAGAATTCGAGAGAAAAAAGATTCAAGAAACTCGCAGAAGTTTCCAGAAATAGACGAGAAGGAGATTTTTTGCAATTTGAAGATATTTTTTCAAGTTTTTGTCAATTTTCCTGAGGGTTTACTTTGATTCCATGTGAATCTACACATTTTTCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTCGTAATAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTTCCTGATTCCAAACACATCCAAGAAAAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTTGTACATAAACGG</canonical>
            <polymorphic>AATTCTTAGAAACTTCGGAAATTTTCGGGAACTGTTTTTAAATTACCGCCAAAACTGAAAACTCTAAACCATCAAGGAATCTAAAATTAGTGTCGTAAATGAAAAACGGAGAGTTTTCAGTTTTTGTAAGAATTCGAGAGAAAAAAGATTCAAGAAACTCGCAGAAGTTTCCAGAAATAGACGAGAAGGAGATTTTTTGCAATTTGAAGATATTTTTTCAAGTTTTTGTCAATTTTCCTGAGGGTTTACTTTGATTCCATGTGAATCTACACATTTTTCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTCGTAATAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAAYGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTTCCTGATTCCAAACACATCCAAGAAAAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTTGTACATAAACGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTATCAGATCCTATCAAGTTCC</pcr_primer_p1>
		<pcr_primer_p2>ATTTAGATTGTTTTGCGTCCTAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAAYGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25784</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>450373</contig_pos>
        <strand>+</strand>
        <context>AGCTGAAAAY[C/T]YYAGACATCT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAAT</left_flank>
        <right_flank>CCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCTTAGAAACTTCGGAAATTTTCGGGAACTGTTTTTAAATTACCGCCAAAACTGAAAACTCTAAACCATCAAGGAATCTAAAATTAGTGTCGTAAATGAAAAACGGAGAGTTTTCAGTTTTTGTAAGAATTCGAGAGAAAAAAGATTCAAGAAACTCGCAGAAGTTTCCAGAAATAGACGAGAAGGAGATTTTTTGCAATTTGAAGATATTTTTTCAAGTTTTTGTCAATTTTCCTGAGGGTTTACTTTGATTCCATGTGAATCTACACATTTTTCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTCGTAATAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTTCCTGATTCCAAACACATCCAAGAAAAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTTGTACATAAACGGC</canonical>
            <polymorphic>ATTCTTAGAAACTTCGGAAATTTTCGGGAACTGTTTTTAAATTACCGCCAAAACTGAAAACTCTAAACCATCAAGGAATCTAAAATTAGTGTCGTAAATGAAAAACGGAGAGTTTTCAGTTTTTGTAAGAATTCGAGAGAAAAAAGATTCAAGAAACTCGCAGAAGTTTCCAGAAATAGACGAGAAGGAGATTTTTTGCAATTTGAAGATATTTTTTCAAGTTTTTGTCAATTTTCCTGAGGGTTTACTTTGATTCCATGTGAATCTACACATTTTTCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTCGTAATAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATYCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTTCCTGATTCCAAACACATCCAAGAAAAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTTGTACATAAACGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>497 305 198</canonical_bands>
                <polymorphic_bands>695 305</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTATCAGATCCTATCAAGTTCC</pcr_primer_p1>
		<pcr_primer_p2>ATTTAGATTGTTTTGCGTCCTAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATYCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25785</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>450374</contig_pos>
        <strand></strand>
        <context>GCTGAAAAYY[C/T]YAGACATCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATG</left_flank>
        <right_flank>CAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTAGAAACTTCGGAAATTTTCGGGAACTGTTTTTAAATTACCGCCAAAACTGAAAACTCTAAACCATCAAGGAATCTAAAATTAGTGTCGTAAATGAAAAACGGAGAGTTTTCAGTTTTTGTAAGAATTCGAGAGAAAAAAGATTCAAGAAACTCGCAGAAGTTTCCAGAAATAGACGAGAAGGAGATTTTTTGCAATTTGAAGATATTTTTTCAAGTTTTTGTCAATTTTCCTGAGGGTTTACTTTGATTCCATGTGAATCTACACATTTTTCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTCGTAATAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTTCCTGATTCCAAACACATCCAAGAAAAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTTGTACATAAACGGCA</canonical>
            <polymorphic>TTCTTAGAAACTTCGGAAATTTTCGGGAACTGTTTTTAAATTACCGCCAAAACTGAAAACTCTAAACCATCAAGGAATCTAAAATTAGTGTCGTAAATGAAAAACGGAGAGTTTTCAGTTTTTGTAAGAATTCGAGAGAAAAAAGATTCAAGAAACTCGCAGAAGTTTCCAGAAATAGACGAGAAGGAGATTTTTTGCAATTTGAAGATATTTTTTCAAGTTTTTGTCAATTTTCCTGAGGGTTTACTTTGATTCCATGTGAATCTACACATTTTTCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTCGTAATAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGYCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTTCCTGATTCCAAACACATCCAAGAAAAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTTGTACATAAACGGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>496 306 198</canonical_bands>
                <polymorphic_bands>694 306</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTATCAGATCCTATCAAGTTCC</pcr_primer_p1>
		<pcr_primer_p2>ATTTAGATTGTTTTGCGTCCTAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGYCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25786</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>450375</contig_pos>
        <strand>+</strand>
        <context>CTGAAAAYYY[C/T]AGACATCTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGC</left_flank>
        <right_flank>AGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTAGAAACTTCGGAAATTTTCGGGAACTGTTTTTAAATTACCGCCAAAACTGAAAACTCTAAACCATCAAGGAATCTAAAATTAGTGTCGTAAATGAAAAACGGAGAGTTTTCAGTTTTTGTAAGAATTCGAGAGAAAAAAGATTCAAGAAACTCGCAGAAGTTTCCAGAAATAGACGAGAAGGAGATTTTTTGCAATTTGAAGATATTTTTTCAAGTTTTTGTCAATTTTCCTGAGGGTTTACTTTGATTCCATGTGAATCTACACATTTTTCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTCGTAATAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTTCCTGATTCCAAACACATCCAAGAAAAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTTGTACATAAACGGCAT</canonical>
            <polymorphic>TCTTAGAAACTTCGGAAATTTTCGGGAACTGTTTTTAAATTACCGCCAAAACTGAAAACTCTAAACCATCAAGGAATCTAAAATTAGTGTCGTAAATGAAAAACGGAGAGTTTTCAGTTTTTGTAAGAATTCGAGAGAAAAAAGATTCAAGAAACTCGCAGAAGTTTCCAGAAATAGACGAGAAGGAGATTTTTTGCAATTTGAAGATATTTTTTCAAGTTTTTGTCAATTTTCCTGAGGGTTTACTTTGATTCCATGTGAATCTACACATTTTTCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTCGTAATAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCYAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTTCCTGATTCCAAACACATCCAAGAAAAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTTGTACATAAACGGCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTATCAGATCCTATCAAGTTCC</pcr_primer_p1>
		<pcr_primer_p2>ATTTAGATTGTTTTGCGTCCTAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCYAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25787</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>450397</contig_pos>
        <strand>+</strand>
        <context>GAAAAATCAA[A/C]AWATWGAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAA</left_flank>
        <right_flank>ATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGGAACTGTTTTTAAATTACCGCCAAAACTGAAAACTCTAAACCATCAAGGAATCTAAAATTAGTGTCGTAAATGAAAAACGGAGAGTTTTCAGTTTTTGTAAGAATTCGAGAGAAAAAAGATTCAAGAAACTCGCAGAAGTTTCCAGAAATAGACGAGAAGGAGATTTTTTGCAATTTGAAGATATTTTTTCAAGTTTTTGTCAATTTTCCTGAGGGTTTACTTTGATTCCATGTGAATCTACACATTTTTCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTCGTAATAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTTCCTGATTCCAAACACATCCAAGAAAAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTTGTACATAAACGGCATTCTCCATTTTAAAAGGTCCAGG</canonical>
            <polymorphic>CGGGAACTGTTTTTAAATTACCGCCAAAACTGAAAACTCTAAACCATCAAGGAATCTAAAATTAGTGTCGTAAATGAAAAACGGAGAGTTTTCAGTTTTTGTAAGAATTCGAGAGAAAAAAGATTCAAGAAACTCGCAGAAGTTTCCAGAAATAGACGAGAAGGAGATTTTTTGCAATTTGAAGATATTTTTTCAAGTTTTTGTCAATTTTCCTGAGGGTTTACTTTGATTCCATGTGAATCTACACATTTTTCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTCGTAATAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAAMATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTTCCTGATTCCAAACACATCCAAGAAAAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTTGTACATAAACGGCATTCTCCATTTTAAAAGGTCCAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTATCAGATCCTATCAAGTTCC</pcr_primer_p1>
		<pcr_primer_p2>ATTTAGATTGTTTTGCGTCCTAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAAMATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25788</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>450399</contig_pos>
        <strand>+</strand>
        <context>AAAATCAAMA[A/T]ATWGAATTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACA</left_flank>
        <right_flank>ATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAACTGTTTTTAAATTACCGCCAAAACTGAAAACTCTAAACCATCAAGGAATCTAAAATTAGTGTCGTAAATGAAAAACGGAGAGTTTTCAGTTTTTGTAAGAATTCGAGAGAAAAAAGATTCAAGAAACTCGCAGAAGTTTCCAGAAATAGACGAGAAGGAGATTTTTTGCAATTTGAAGATATTTTTTCAAGTTTTTGTCAATTTTCCTGAGGGTTTACTTTGATTCCATGTGAATCTACACATTTTTCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTCGTAATAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTTCCTGATTCCAAACACATCCAAGAAAAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTTGTACATAAACGGCATTCTCCATTTTAAAAGGTCCAGGGA</canonical>
            <polymorphic>GGAACTGTTTTTAAATTACCGCCAAAACTGAAAACTCTAAACCATCAAGGAATCTAAAATTAGTGTCGTAAATGAAAAACGGAGAGTTTTCAGTTTTTGTAAGAATTCGAGAGAAAAAAGATTCAAGAAACTCGCAGAAGTTTCCAGAAATAGACGAGAAGGAGATTTTTTGCAATTTGAAGATATTTTTTCAAGTTTTTGTCAATTTTCCTGAGGGTTTACTTTGATTCCATGTGAATCTACACATTTTTCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTCGTAATAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACAWATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTTCCTGATTCCAAACACATCCAAGAAAAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTTGTACATAAACGGCATTCTCCATTTTAAAAGGTCCAGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTATCAGATCCTATCAAGTTCC</pcr_primer_p1>
		<pcr_primer_p2>ATTTAGATTGTTTTGCGTCCTAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACAWATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25789</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>450402</contig_pos>
        <strand>+</strand>
        <context>ATCAAMAWAT[A/T]GAATTCCATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATAT</left_flank>
        <right_flank>GAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGTTTTTAAATTACCGCCAAAACTGAAAACTCTAAACCATCAAGGAATCTAAAATTAGTGTCGTAAATGAAAAACGGAGAGTTTTCAGTTTTTGTAAGAATTCGAGAGAAAAAAGATTCAAGAAACTCGCAGAAGTTTCCAGAAATAGACGAGAAGGAGATTTTTTGCAATTTGAAGATATTTTTTCAAGTTTTTGTCAATTTTCCTGAGGGTTTACTTTGATTCCATGTGAATCTACACATTTTTCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTCGTAATAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTTCCTGATTCCAAACACATCCAAGAAAAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTTGTACATAAACGGCATTCTCCATTTTAAAAGGTCCAGGGAATT</canonical>
            <polymorphic>ACTGTTTTTAAATTACCGCCAAAACTGAAAACTCTAAACCATCAAGGAATCTAAAATTAGTGTCGTAAATGAAAAACGGAGAGTTTTCAGTTTTTGTAAGAATTCGAGAGAAAAAAGATTCAAGAAACTCGCAGAAGTTTCCAGAAATAGACGAGAAGGAGATTTTTTGCAATTTGAAGATATTTTTTCAAGTTTTTGTCAATTTTCCTGAGGGTTTACTTTGATTCCATGTGAATCTACACATTTTTCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTCGTAATAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATWGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTTCCTGATTCCAAACACATCCAAGAAAAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTTGTACATAAACGGCATTCTCCATTTTAAAAGGTCCAGGGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTATCAGATCCTATCAAGTTCC</pcr_primer_p1>
		<pcr_primer_p2>ATTTAGATTGTTTTGCGTCCTAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATWGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25790</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>450492</contig_pos>
        <strand>+</strand>
        <context>CTTCGTGAAA[A/T]SAAATCATAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAA</left_flank>
        <right_flank>CAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGTAAGAATTCGAGAGAAAAAAGATTCAAGAAACTCGCAGAAGTTTCCAGAAATAGACGAGAAGGAGATTTTTTGCAATTTGAAGATATTTTTTCAAGTTTTTGTCAATTTTCCTGAGGGTTTACTTTGATTCCATGTGAATCTACACATTTTTCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTCGTAATAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTTCCTGATTCCAAACACATCCAAGAAAAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTTGTACATAAACGGCATTCTCCATTTTAAAAGGTCCAGGGAATTCTGTATAGTATTTGTCTCTGGAAAAAGGAATTAGATTGTTTATTGTGCTGTCACATTAGAAAAATCTTATAGTCTTTGAAAATCCCAACA</canonical>
            <polymorphic>TTTTTGTAAGAATTCGAGAGAAAAAAGATTCAAGAAACTCGCAGAAGTTTCCAGAAATAGACGAGAAGGAGATTTTTTGCAATTTGAAGATATTTTTTCAAGTTTTTGTCAATTTTCCTGAGGGTTTACTTTGATTCCATGTGAATCTACACATTTTTCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTCGTAATAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAAWCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTTCCTGATTCCAAACACATCCAAGAAAAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTTGTACATAAACGGCATTCTCCATTTTAAAAGGTCCAGGGAATTCTGTATAGTATTTGTCTCTGGAAAAAGGAATTAGATTGTTTATTGTGCTGTCACATTAGAAAAATCTTATAGTCTTTGAAAATCCCAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGGACGCAAAACAATCTAAA</pcr_primer_p1>
		<pcr_primer_p2>ATAAATGTAGGGGTGTTACTGGT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTAT</canonical_amplicon>
		<polymorphic_amplicon>ATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAAWCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25791</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>450493</contig_pos>
        <strand>+</strand>
        <context>TTCGTGAAAW[C/G]AAATCATATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAAT</left_flank>
        <right_flank>AAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGTAAGAATTCGAGAGAAAAAAGATTCAAGAAACTCGCAGAAGTTTCCAGAAATAGACGAGAAGGAGATTTTTTGCAATTTGAAGATATTTTTTCAAGTTTTTGTCAATTTTCCTGAGGGTTTACTTTGATTCCATGTGAATCTACACATTTTTCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTCGTAATAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTTCCTGATTCCAAACACATCCAAGAAAAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTTGTACATAAACGGCATTCTCCATTTTAAAAGGTCCAGGGAATTCTGTATAGTATTTGTCTCTGGAAAAAGGAATTAGATTGTTTATTGTGCTGTCACATTAGAAAAATCTTATAGTCTTTGAAAATCCCAACAA</canonical>
            <polymorphic>TTTTGTAAGAATTCGAGAGAAAAAAGATTCAAGAAACTCGCAGAAGTTTCCAGAAATAGACGAGAAGGAGATTTTTTGCAATTTGAAGATATTTTTTCAAGTTTTTGTCAATTTTCCTGAGGGTTTACTTTGATTCCATGTGAATCTACACATTTTTCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTCGTAATAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATSAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTTCCTGATTCCAAACACATCCAAGAAAAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTTGTACATAAACGGCATTCTCCATTTTAAAAGGTCCAGGGAATTCTGTATAGTATTTGTCTCTGGAAAAAGGAATTAGATTGTTTATTGTGCTGTCACATTAGAAAAATCTTATAGTCTTTGAAAATCCCAACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGGACGCAAAACAATCTAAA</pcr_primer_p1>
		<pcr_primer_p2>ATAAATGTAGGGGTGTTACTGGT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTAT</canonical_amplicon>
		<polymorphic_amplicon>ATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATSAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25792</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>450608</contig_pos>
        <strand>+</strand>
        <context>TCGCCGCTTT[A/C]AAAAAAACCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTT</left_flank>
        <right_flank>AAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTGAGGGTTTACTTTGATTCCATGTGAATCTACACATTTTTCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTCGTAATAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTTCCTGATTCCAAACACATCCAAGAAAAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTTGTACATAAACGGCATTCTCCATTTTAAAAGGTCCAGGGAATTCTGTATAGTATTTGTCTCTGGAAAAAGGAATTAGATTGTTTATTGTGCTGTCACATTAGAAAAATCTTATAGTCTTTGAAAATCCCAACAAAAAAGCAATCGAAAACCAACGCCTCATCCAATTGGTATTCCAGCGGCATTCTGTTCAAATCCCATTGGTTTTGTCTATGATTTTCCAAAAGACCTGGTCTAAATCGTTCTCCATC</canonical>
            <polymorphic>CCTGAGGGTTTACTTTGATTCCATGTGAATCTACACATTTTTCTACACATTTTGTTGTAAAAATAATTATATTGAGTCCTTCTTTAAAGTTCGTAATAGGTTTCATCTATCAGATCCTATCAAGTTCCATGAAATTTTTGAAATTTTGAACCCGAGTTTGACAATTTTTGAAGAAAATTAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTMAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTTCCTGATTCCAAACACATCCAAGAAAAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTTGTACATAAACGGCATTCTCCATTTTAAAAGGTCCAGGGAATTCTGTATAGTATTTGTCTCTGGAAAAAGGAATTAGATTGTTTATTGTGCTGTCACATTAGAAAAATCTTATAGTCTTTGAAAATCCCAACAAAAAAGCAATCGAAAACCAACGCCTCATCCAATTGGTATTCCAGCGGCATTCTGTTCAAATCCCATTGGTTTTGTCTATGATTTTCCAAAAGACCTGGTCTAAATCGTTCTCCATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>362 278 223 85 52</canonical_bands>
                <polymorphic_bands>362 330 223 85</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>238 224 194 94 84 74 52 40</canonical_bands>
                <polymorphic_bands>238 224 194 94 92 84 74</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATGCAAATTATTGACGTAAG</pcr_primer_p1>
		<pcr_primer_p2>GAATAATTCTAGCGTTTGTTTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTC</canonical_amplicon>
		<polymorphic_amplicon>AAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTMAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25793</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>450786</contig_pos>
        <strand>+</strand>
        <context>AACACATCTT[A/C]CTGATTCCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTT</left_flank>
        <right_flank>CTGATTCCAAACACATCCAAGAAAAATTCTCGAAGTGTTTTGAAGTGATA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTTCCTGATTCCAAACACATCCAAGAAAAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTTGTACATAAACGGCATTCTCCATTTTAAAAGGTCCAGGGAATTCTGTATAGTATTTGTCTCTGGAAAAAGGAATTAGATTGTTTATTGTGCTGTCACATTAGAAAAATCTTATAGTCTTTGAAAATCCCAACAAAAAAGCAATCGAAAACCAACGCCTCATCCAATTGGTATTCCAGCGGCATTCTGTTCAAATCCCATTGGTTTTGTCTATGATTTTCCAAAAGACCTGGTCTAAATCGTTCTCCATCTTCTTGTTCAATATGAATTAAGTTCAAATTGTCAGAGTATGCTCCATTCAACCATCCATGAACAAATTTCCGAATATGATACGCTCCGGTGGGACCACAAAAATACGCATTAACTCCTTCAAATTGGGAAATGTAGCCCAAGAAGTTCTGTTTGAAGCAAATGACACGCAAATTCCGG</canonical>
            <polymorphic>TAATTCTTTTCAATTTTTGGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTTMCTGATTCCAAACACATCCAAGAAAAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTTGTACATAAACGGCATTCTCCATTTTAAAAGGTCCAGGGAATTCTGTATAGTATTTGTCTCTGGAAAAAGGAATTAGATTGTTTATTGTGCTGTCACATTAGAAAAATCTTATAGTCTTTGAAAATCCCAACAAAAAAGCAATCGAAAACCAACGCCTCATCCAATTGGTATTCCAGCGGCATTCTGTTCAAATCCCATTGGTTTTGTCTATGATTTTCCAAAAGACCTGGTCTAAATCGTTCTCCATCTTCTTGTTCAATATGAATTAAGTTCAAATTGTCAGAGTATGCTCCATTCAACCATCCATGAACAAATTTCCGAATATGATACGCTCCGGTGGGACCACAAAAATACGCATTAACTCCTTCAAATTGGGAAATGTAGCCCAAGAAGTTCTGTTTGAAGCAAATGACACGCAAATTCCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>366 301 105 98 59 42 29</canonical_bands>
                <polymorphic_bands>366 330 105 98 59 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAACACCCCTACATTTATCAAAC</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTTCCAGAGACAAATACTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTTCCTGATTCCAAACACATCCAAGAAAAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTTGTACATAAACGGCATTCTCCATTTTAAAAGGTCCAGGGAATTCTGTATAGTATTTGTCTCTGGAAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>TAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTTMCTGATTCCAAACACATCCAAGAAAAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTTGTACATAAACGGCATTCTCCATTTTAAAAGGTCCAGGGAATTCTGTATAGTATTTGTCTCTGGAAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25794</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>450804</contig_pos>
        <strand>+</strand>
        <context>CAAACACATC[C/T]AAGAARAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAACGCTAGAATTATTCTCTGAACACATCTTCCTGATTCCAAACACATC</left_flank>
        <right_flank>AAGAAAAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTTCCTGATTCCAAACACATCCAAGAAAAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTTGTACATAAACGGCATTCTCCATTTTAAAAGGTCCAGGGAATTCTGTATAGTATTTGTCTCTGGAAAAAGGAATTAGATTGTTTATTGTGCTGTCACATTAGAAAAATCTTATAGTCTTTGAAAATCCCAACAAAAAAGCAATCGAAAACCAACGCCTCATCCAATTGGTATTCCAGCGGCATTCTGTTCAAATCCCATTGGTTTTGTCTATGATTTTCCAAAAGACCTGGTCTAAATCGTTCTCCATCTTCTTGTTCAATATGAATTAAGTTCAAATTGTCAGAGTATGCTCCATTCAACCATCCATGAACAAATTTCCGAATATGATACGCTCCGGTGGGACCACAAAAATACGCATTAACTCCTTCAAATTGGGAAATGTAGCCCAAGAAGTTCTGTTTGAAGCAAATGACACGCAAATTCCGGATGATGATACCAGGTACT</canonical>
            <polymorphic>GGTAAAAAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTTCCTGATTCCAAACACATCYAAGAAAAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTTGTACATAAACGGCATTCTCCATTTTAAAAGGTCCAGGGAATTCTGTATAGTATTTGTCTCTGGAAAAAGGAATTAGATTGTTTATTGTGCTGTCACATTAGAAAAATCTTATAGTCTTTGAAAATCCCAACAAAAAAGCAATCGAAAACCAACGCCTCATCCAATTGGTATTCCAGCGGCATTCTGTTCAAATCCCATTGGTTTTGTCTATGATTTTCCAAAAGACCTGGTCTAAATCGTTCTCCATCTTCTTGTTCAATATGAATTAAGTTCAAATTGTCAGAGTATGCTCCATTCAACCATCCATGAACAAATTTCCGAATATGATACGCTCCGGTGGGACCACAAAAATACGCATTAACTCCTTCAAATTGGGAAATGTAGCCCAAGAAGTTCTGTTTGAAGCAAATGACACGCAAATTCCGGATGATGATACCAGGTACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACACCCCTACATTTATCAAAC</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTTCCAGAGACAAATACTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTTCCTGATTCCAAACACATCCAAGAAAAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTTGTACATAAACGGCATTCTCCATTTTAAAAGGTCCAGGGAATTCTGTATAGTATTTGTCTCTGGAAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>TAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTTCCTGATTCCAAACACATCYAAGAAAAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTTGTACATAAACGGCATTCTCCATTTTAAAAGGTCCAGGGAATTCTGTATAGTATTTGTCTCTGGAAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25795</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>450810</contig_pos>
        <strand>+</strand>
        <context>CATCYAAGAA[A/G]AATTCTCGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAGAATTATTCTCTGAACACATCTTCCTGATTCCAAACACATCCAAGAA</left_flank>
        <right_flank>AATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTTCCTGATTCCAAACACATCCAAGAAAAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTTGTACATAAACGGCATTCTCCATTTTAAAAGGTCCAGGGAATTCTGTATAGTATTTGTCTCTGGAAAAAGGAATTAGATTGTTTATTGTGCTGTCACATTAGAAAAATCTTATAGTCTTTGAAAATCCCAACAAAAAAGCAATCGAAAACCAACGCCTCATCCAATTGGTATTCCAGCGGCATTCTGTTCAAATCCCATTGGTTTTGTCTATGATTTTCCAAAAGACCTGGTCTAAATCGTTCTCCATCTTCTTGTTCAATATGAATTAAGTTCAAATTGTCAGAGTATGCTCCATTCAACCATCCATGAACAAATTTCCGAATATGATACGCTCCGGTGGGACCACAAAAATACGCATTAACTCCTTCAAATTGGGAAATGTAGCCCAAGAAGTTCTGTTTGAAGCAAATGACACGCAAATTCCGGATGATGATACCAGGTACTTCTCCA</canonical>
            <polymorphic>AAATCCAAAAACTTCCCAAAAAAGCAAAACCAACCAAATCTGGTCAAGTTTAAGCTGAAAATGCCAGACATCTCATGAAAAATCAACATATAGAATTCCATTTTGTCTATAATTTCCAGAATTAGAAAAAATAGGACGCAAAACAATCTAAATATGTCTTGTTTTACAATACTTCGTGAAATCAAATCATATTGAAAAATTCGGAAAATTCGGAAAATGCAAATTATTGACGTAAGAAAAAATTTAAAGCGGCAAATAATGCAAGTGTAAAATCTAAAATTGCATTCTCGCCGCTTTAAAAAAAACCGGCATTTTGATGCAATTTCGCGTGAAGATTAATGGGCCGGCCCACTTGCACCGGCGACCAGTAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTTCCTGATTCCAAACACATCCAAGAARAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTTGTACATAAACGGCATTCTCCATTTTAAAAGGTCCAGGGAATTCTGTATAGTATTTGTCTCTGGAAAAAGGAATTAGATTGTTTATTGTGCTGTCACATTAGAAAAATCTTATAGTCTTTGAAAATCCCAACAAAAAAGCAATCGAAAACCAACGCCTCATCCAATTGGTATTCCAGCGGCATTCTGTTCAAATCCCATTGGTTTTGTCTATGATTTTCCAAAAGACCTGGTCTAAATCGTTCTCCATCTTCTTGTTCAATATGAATTAAGTTCAAATTGTCAGAGTATGCTCCATTCAACCATCCATGAACAAATTTCCGAATATGATACGCTCCGGTGGGACCACAAAAATACGCATTAACTCCTTCAAATTGGGAAATGTAGCCCAAGAAGTTCTGTTTGAAGCAAATGACACGCAAATTCCGGATGATGATACCAGGTACTTCTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>274 260 106 104 93 88 34 32 9</canonical_bands>
                <polymorphic_bands>348 274 106 104 93 34 32 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAACACCCCTACATTTATCAAAC</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTTCCAGAGACAAATACTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTTCCTGATTCCAAACACATCCAAGAAAAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTTGTACATAAACGGCATTCTCCATTTTAAAAGGTCCAGGGAATTCTGTATAGTATTTGTCTCTGGAAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>TAACACCCCTACATTTATCAAACCAATCGGAAAGAAGTTTTAGATCTGATACGATAGTAGTTGGTTTAGTAGAAACAAACGCTAGAATTATTCTCTGAACACATCTTCCTGATTCCAAACACATCCAAGAARAATTCTCGAAGTGTTTTGAAGTGATAGAACTTTCCCATCGGATTCTCTTTGTACATAAACGGCATTCTCCATTTTAAAAGGTCCAGGGAATTCTGTATAGTATTTGTCTCTGGAAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25796</snp_id>
        <super_contig>c001701137.Contig3</super_contig>
        <contig_pos>500817</contig_pos>
        <strand></strand>
        <context>gcattaattc[T/C]aagcatgtta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGCCACTCTTTTTTGAATTTTTTGGCATTTTCTGACTTGCGCATTAATTC</left_flank>
        <right_flank>AAGCATGTTAGAAATATTTTTGAGGTGTCTGGACCTCTAGAAAGTATAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGACGTTGCTCGCGACCCCTTAAAAATGACAATTTGTTGAAATTTCGGATCCAAAAACGGAAAACTCGACTTACGATTCACTTCTAACTGTCACCACATCGCCAACAACATCCAATTGCTCATCTCGATGCGATAGAAACATGACGAGGATAAATGTGAAAAGGGAAGCGGAGAGAGCAATGATTTCGGGAAGGAATGCACGAGTGGAATCGAAAGTTCCAGTTGGATGGAAACGGACGAGACCGATGCTTCGGAAAAGAGTGGTATCGGATCGATTGCAGATGTAGGTTCGGTCATTTTTGTGCACAAATTGTTCAGAAATTTGATAAGATCCGATTCCTAATGCGACCGCCAGGCAGAATAAGAAGTTGATAGTGACGAAGGTTCCGATTACTTCTGGAAGAAAGTTAGGGATTCTTGAACGAATTTTTGGCGCTATGTTGGTTGGGGGCCACTCTTTTTTGAATTTTTTGGCATTTTCTGACTTGCGCATTAATTCTAAGCATGTTAGAAATATTTTTGAGGTGTCTGGACCTCTAGAAAGTATAAAATAATATAATAAAATACAAATTCATGTTATTTGCTTCTTTATTTTAGGCTTAGGCTAAAACGCCGGCGCTAGCGTAGTTGGGAGGGCACCCAAATTTTTTGAATTTAGCGCCATTTTCGGATGTCCCAGTGGAAAGAAAACAAGGAGTTTTTGCCTAAGCCTGTAATTAAAAAAAAAAGAAAAAATCTGAAAAAAATTTTCAGCCAGAAAAGTACTGAAATTGGCGAAAATCAGTGAAAATCGCACATTTTGGCTGAAATTTTTTTTTCAAAATGTTTGGTTTTTGTTTAAAATTATAGGCTTAGGCAAAAACACCCTGTTTCCCTTCCTCTGGGACACCCGCATTTTGGCGCCAAATTCAAAAAATTTGGGTGCCCCAACTCACAAAAGCCAAAATAGGTGAAAAATGCAAATCACATAAAAAATGCTGATTGAGAATGCTTCATTTCC</canonical>
            <polymorphic>CGACGTTGCTCGCGACCCCTTAAAAATGACAATTTGTTGAAATTTCGGATCCAAAAACGGAAAACTCGACTTACGATTCACTTCTAACTGTCACCACATCGCCAACAACATCCAATTGCTCATCTCGATGCGATAGAAACATGACGAGGATAAATGTGAAAAGGGAAGCGGAGAGAGCAATGATTTCGGGAAGGAATGCACGAGTGGAATCGAAAGTTCCAGTTGGATGGAAACGGACGAGACCGATGCTTCGGAAAAGAGTGGTATCGGATCGATTGCAGATGTAGGTTCGGTCATTTTTGTGCACAAATTGTTCAGAAATTTGATAAGATCCGATTCCTAATGCGACCGCCAGGCAGAATAAGAAGTTGATAGTGACGAAGGTTCCGATTACTTCTGGAAGAAAGTTAGGGATTCTTGAACGAATTTTTGGCGCTATGTTGGTTGGGGGCCACTCTTTTTTGAATTTTTTGGCATTTTCTGACTTGCGCATTAATTCYAAGCATGTTAGAAATATTTTTGAGGTGTCTGGACCTCTAGAAAGTATAAAATAATATAATAAAATACAAATTCATGTTATTTGCTTCTTTATTTTAGGCTTAGGCTAAAACGCCGGCGCTAGCGTAGTTGGGAGGGCACCCAAATTTTTTGAATTTAGCGCCATTTTCGGATGTCCCAGTGGAAAGAAAACAAGGAGTTTTTGCCTAAGCCTGTAATTAAAAAAAAAAGAAAAAATCTGAAAAAAATTTTCAGCCAGAAAAGTACTGAAATTGGCGAAAATCAGTGAAAATCGCACATTTTGGCTGAAATTTTTTTTTCAAAATGTTTGGTTTTTGTTTAAAATTATAGGCTTAGGCAAAAACACCCTGTTTCCCTTCCTCTGGGACACCCGCATTTTGGCGCCAAATTCAAAAAATTTGGGTGCCCCAACTCACAAAAGCCAAAATAGGTGAAAAATGCAAATCACATAAAAAATGCTGATTGAGAATGCTTCATTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>499 149 146 106 100</canonical_bands>
                <polymorphic_bands>599 149 146 106</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGGGATTCTTGAACGAATTT</pcr_primer_p1>
		<pcr_primer_p2>GAACTTTTTCATTTTTGTTCATT</pcr_primer_p2>
		<pcr_amplicon_size>913</pcr_amplicon_size>
		<canonical_amplicon>TAGGGATTCTTGAACGAATTTTTGGCGCTATGTTGGTTGGGGGCCACTCTTTTTTGAATTTTTTGGCATTTTCTGACTTGCGCATTAATTCTAAGCATGTTAGAAATATTTTTG</canonical_amplicon>
		<polymorphic_amplicon>TAGGGATTCTTGAACGAATTTTTGGCGCTATGTTGGTTGGGGGCCACTCTTTTTTGAATTTTTTGGCATTTTCTGACTTGCGCATTAATTCYAAGCATGTTAGAAATATTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25797</snp_id>
        <super_contig>c001701441.Contig1</super_contig>
        <contig_pos>2113</contig_pos>
        <strand></strand>
        <context>CCACCATTGT[T/C]CTCTCTCAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAAATGCAAGAGGTTGTTGAATTGATCGAAAAACTGATTCCACCATTGT</left_flank>
        <right_flank>CTCTCTCAACAGACACTTTTGGAAGCCGTAGAGGGCGAGCCATATTGATC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTCATTACACATCAAAGCATCATTCATAACTTGCTCATAAGTCATCATTACTTCTTGCAATAGCTGCCATAAAGTATCTGGCGTAGCATACATATTCGTGGAAGAACTTTGACATTCAAATCGAAGACCTTGAATTCGGATTGCTAGAATACCCAAAATGTAGGTTAGACTTGAGTAGTACTTTTTGATTTCTCGTAAGTCATCTTCTAGCAGTTTTCCATGATTTGACAAATTTTCAACTTGAACTCTTCTGAGTTCCGTATGAAGTAAAGGGGAATTTTCAACACATCCTCGGCGAAATGCTGCCAAACATGGTCGGAGCTGAAATTTGAAATTGTTTGATAAATTTCGCTTCAAGCTATCAGAATACCTGTCTCGTGAAAAATGCTCTCATCTTGATTTCAACATTGCAATTTGGATTTTGCAACTGGGAGAGCAATCCGTGCAAAAAATGCAAGAGGTTGTTGAATTGATCGAAAAACTGATTCCACCATTGTTCTCTCTCAACAGACACTTTTGGAAGCCGTAGAGGGCGAGCCATATTGATCAGGCGAATCAAGTATAGGTTCAAACTTTCCGTTGTAGAATCTTTTTCGATTGTCTGTGGTAAACGAACAATGCATACCAGAAGACCCCAAACAAGAACATTCCACTCGTCTTCAAACTCATCATCTCCAAGTTCCGGGGATGCCAAAACTGAAAGAAAGGACTTTTATGACGAAATGTAGAGGTCTTAAACATGTTTCCAACTTTGATAATACTTTATTATGTCCACAAGCAAAGCGGGACTAACAGATAACTTCTAGATGCAGGCTCAAGAGCCGCGGACGGGTGAACACCGCCTAGTTTCCGCTTTAGCGATGAGCGCGGACCGTTGACGGCTTGTCGACGGACCGTTCCTTCGCTGTGAATAGAGTCACAGTTTTTGAACTAAAAGTTGTTAGACATGAATCCATTAACCGCGAAGGAGAATTCGCATAGAAATTGTAAGCTCTTTT</canonical>
            <polymorphic>GGCTCATTACACATCAAAGCATCATTCATAACTTGCTCATAAGTCATCATTACTTCTTGCAATAGCTGCCATAAAGTATCTGGCGTAGCATACATATTCGTGGAAGAACTTTGACATTCAAATCGAAGACCTTGAATTCGGATTGCTAGAATACCCAAAATGTAGGTTAGACTTGAGTAGTACTTTTTGATTTCTCGTAAGTCATCTTCTAGCAGTTTTCCATGATTTGACAAATTTTCAACTTGAACTCTTCTGAGTTCCGTATGAAGTAAAGGGGAATTTTCAACACATCCTCGGCGAAATGCTGCCAAACATGGTCGGAGCTGAAATTTGAAATTGTTTGATAAATTTCGCTTCAAGCTATCAGAATACCTGTCTCGTGAAAAATGCTCTCATCTTGATTTCAACATTGCAATTTGGATTTTGCAACTGGGAGAGCAATCCGTGCAAAAAATGCAAGAGGTTGTTGAATTGATCGAAAAACTGATTCCACCATTGTYCTCTCTCAACAGACACTTTTGGAAGCCGTAGAGGGCGAGCCATATTGATCAGGCGAATCAAGTATAGGTTCAAACTTTCCGTTGTAGAATCTTTTTCGATTGTCTGTGGTAAACGAACAATGCATACCAGAAGACCCCAAACAAGAACATTCCACTCGTCTTCAAACTCATCATCTCCAAGTTCCGGGGATGCCAAAACTGAAAGAAAGGACTTTTATGACGAAATGTAGAGGTCTTAAACATGTTTCCAACTTTGATAATACTTTATTATGTCCACAAGCAAAGCGGGACTAACAGATAACTTCTAGATGCAGGCTCAAGAGCCGCGGACGGGTGAACACCGCCTAGTTTCCGCTTTAGCGATGAGCGCGGACCGTTGACGGCTTGTCGACGGACCGTTCCTTCGCTGTGAATAGAGTCACAGTTTTTGAACTAAAAGTTGTTAGACATGAATCCATTAACCGCGAAGGAGAATTCGCATAGAAATTGTAAGCTCTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGCTATCAGAATACCTGTCTC</pcr_primer_p1>
		<pcr_primer_p2>CAGACAATCGAAAAAGATTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAGCTATCAGAATACCTGTCTCGTGAAAAATGCTCTCATCTTGATTTCAACATTGCAATTTGGATTTTGCAACTGGGAGAGCAATCCGTGCAAAAAATGCAAGAGGTTGTTGAATTGATCGAAAAACTGATTCCACCATTGTTCTCTCTCAACAGACACTTTTGGAAGCCGTAGAGGGCGAGCCATATTGATCAGGCGAATCAAGTATAGGTTCAAACTTTCCGTTGTAGAATCTTTTTCGATTGTCTG</canonical_amplicon>
		<polymorphic_amplicon>CAAGCTATCAGAATACCTGTCTCGTGAAAAATGCTCTCATCTTGATTTCAACATTGCAATTTGGATTTTGCAACTGGGAGAGCAATCCGTGCAAAAAATGCAAGAGGTTGTTGAATTGATCGAAAAACTGATTCCACCATTGTYCTCTCTCAACAGACACTTTTGGAAGCCGTAGAGGGCGAGCCATATTGATCAGGCGAATCAAGTATAGGTTCAAACTTTCCGTTGTAGAATCTTTTTCGATTGTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25798</snp_id>
        <super_contig>c001701441.Contig1</super_contig>
        <contig_pos>25200</contig_pos>
        <strand>+</strand>
        <context>TCTCTTTTTG[C/T]TTAATCTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTAAAGTTCTTTGAGGAGTAGCTGGAAGTGCTTCAGATTCTCTTTTTG</left_flank>
        <right_flank>TTAATCTTTTTTTTTCATTATCTTTATTTTCAACATGTTTCCATGTTAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGTACCAGCTTAAAAACTAACATTGTTGATTAACAAAAAGAAACAACTTTCAATTCTTTTCTGTTTTCACAAGTTGACCTAATTCAACGCAATCAAAATAGTGAAATTCGGTCGTCATGGCTCGTTACTCATCTTACGTCACCTTTTCTCAGACAGAATTTCCTTCGTTAACCTTCTACAACATTTTTCAAAAGGGAAATCAAGTGATGTCTGAATAATTGTAATGCTCTTCCACGAGAAGTCCCATCATGGAATTGAAAACCGAATTATCAGTACTTTTTTATTTTTCAATTGTTCAGGATCCACCACATCGACTGGTTTTGTAAGGATTTCAACACCATTGGTTGTAGTCAAGATTTGGAACCGTGACATCTACGTCAGACTACCCGGGCTGGGTCCTGTGTCAAGTTATTATAAAGTAGTCCTGAAAGAATTATGATGATCTTATCTTAAAGTTCTTTGAGGAGTAGCTGGAAGTGCTTCAGATTCTCTTTTTGCTTAATCTTTTTTTTTCATTATCTTTATTTTCAACATGTTTCCATGTTAAAAAAAACAAATTTTTTGGAATTCCAAATTTGTAGTTTTCAGAATTAGGAACTTTGAAAGTACTAACACAATGTCCAGATGGTGCATAACCTCCGCTGGCCAACCGTAATCCTTATTTGCTCATTATAAAGGCATTTTCTAATAAATGCACATCGCATCAGTGGCAACATCGAAGAAAGGAGACGACGAGCGGTAGTAATCTGTCCGTGTAATACAAAAAATACACATACAACAATTCGATACAAACATAGATGTAGATACTCTTCATCAAATGAAAGAAAAAGAAAAAGGAGAAACCTAGTTTCTTCCTTTTACTCAAATCTATTTTCTCTGTAATTACATCAAAAATGACCTCCCAGAAGCCGTGAAGATGAGCAGTCAATTTGGAGAGGGAAATCCTTTTAGTTCCAAATTATTTTTATGAGCTACATAGAGTGGCTCATTTTCTTTTT</canonical>
            <polymorphic>TTTGTACCAGCTTAAAAACTAACATTGTTGATTAACAAAAAGAAACAACTTTCAATTCTTTTCTGTTTTCACAAGTTGACCTAATTCAACGCAATCAAAATAGTGAAATTCGGTCGTCATGGCTCGTTACTCATCTTACGTCACCTTTTCTCAGACAGAATTTCCTTCGTTAACCTTCTACAACATTTTTCAAAAGGGAAATCAAGTGATGTCTGAATAATTGTAATGCTCTTCCACGAGAAGTCCCATCATGGAATTGAAAACCGAATTATCAGTACTTTTTTATTTTTCAATTGTTCAGGATCCACCACATCGACTGGTTTTGTAAGGATTTCAACACCATTGGTTGTAGTCAAGATTTGGAACCGTGACATCTACGTCAGACTACCCGGGCTGGGTCCTGTGTCAAGTTATTATAAAGTAGTCCTGAAAGAATTATGATGATCTTATCTTAAAGTTCTTTGAGGAGTAGCTGGAAGTGCTTCAGATTCTCTTTTTGYTTAATCTTTTTTTTTCATTATCTTTATTTTCAACATGTTTCCATGTTAAAAAAAACAAATTTTTTGGAATTCCAAATTTGTAGTTTTCAGAATTAGGAACTTTGAAAGTACTAACACAATGTCCAGATGGTGCATAACCTCCGCTGGCCAACCGTAATCCTTATTTGCTCATTATAAAGGCATTTTCTAATAAATGCACATCGCATCAGTGGCAACATCGAAGAAAGGAGACGACGAGCGGTAGTAATCTGTCCGTGTAATACAAAAAATACACATACAACAATTCGATACAAACATAGATGTAGATACTCTTCATCAAATGAAAGAAAAAGAAAAAGGAGAAACCTAGTTTCTTCCTTTTACTCAAATCTATTTTCTCTGTAATTACATCAAAAATGACCTCCCAGAAGCCGTGAAGATGAGCAGTCAATTTGGAGAGGGAAATCCTTTTAGTTCCAAATTATTTTTATGAGCTACATAGAGTGGCTCATTTTCTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTGACATCTACGTCAGACTAC</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAGTTCCTAATTCTGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CGTGACATCTACGTCAGACTACCCGGGCTGGGTCCTGTGTCAAGTTATTATAAAGTAGTCCTGAAAGAATTATGATGATCTTATCTTAAAGTTCTTTGAGGAGTAGCTGGAAGTGCTTCAGATTCTCTTTTTGCTTAATCTTTTTTTTTCATTATCTTTATTTTCAACATGTTTCCATGTTAAAAAAAACAAATTTTTTGGAATTCCAAATTTGTAGTTTTCAGAATTAGGAACTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>CGTGACATCTACGTCAGACTACCCGGGCTGGGTCCTGTGTCAAGTTATTATAAAGTAGTCCTGAAAGAATTATGATGATCTTATCTTAAAGTTCTTTGAGGAGTAGCTGGAAGTGCTTCAGATTCTCTTTTTGYTTAATCTTTTTTTTTCATTATCTTTATTTTCAACATGTTTCCATGTTAAAAAAAACAAATTTTTTGGAATTCCAAATTTGTAGTTTTCAGAATTAGGAACTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25799</snp_id>
        <super_contig>c001701441.Contig1</super_contig>
        <contig_pos>72695</contig_pos>
        <strand>+</strand>
        <context>AACCAACTGG[A/G]TTTTTTGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATCAGAACCGGGAAGAGAATACTGTTAAAGGGGATTCTAACCAACTGG</left_flank>
        <right_flank>TTTTTTGTTTTTTTCTTGTATTAGGATGTTCCCAAAATTATCTATTCTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGGTTATACTGCGGCTTTTCTCTTTGAACTGTATCTTTATCATAAATTAGCATTGCCCTTCACCCGATTCTTCGGCTCTTCTAAAAAGACGAAGAGAGAGTACTTCATCAAGAGAGAATCAGAGAATTCAACTCGTTTATCTTCCTGTCGCCGAACAACGCGCAAAGTCACCATCCACGAAATGTTTCACCAATTTGCACTTTCTCTGACCACACCATTGAACCATAGAAACTCCTGTTTACGGTGTTTTTTTTCAACTTCGGGAAAGGGCGTGGGAAAAACACGGTACATCAAAAAGAGCGAGGTGAGTTGAGGCGAAACGATTCCAATTTCTGAGGACGGCGTGTTGTATAGTCCTGAATAGAAACGAGTCAATGTATTCGATTCACTGATTTCTTCTCTTTATGATCTCCTCGTTCTTTTCATGTTTTTGTACCAGAAGGGACCCTGATCAGAACCGGGAAGAGAATACTGTTAAAGGGGATTCTAACCAACTGGTTTTTTTGTTTTTTTCTTGTATTAGGATGTTCCCAAAATTATCTATTCTCATAAAATTGCTTCGAAAAAATTCGGAAAAACACGAAATCCCTAAAAATGCCATCAATTCTCGTTTAAGTTGCCCACACAATGGCCTAGCACTAGGATTCCCGCGACCCTCTTGGACGAAAACTGGAGGCTCTTGCACACAGTTTTCAGAGATTTCCAAAATTTTCTGAACTTATAACCTTGTTTACCATAACCTTGTTTACAATAAAATACTTCTCTAAGTCTTAAACTGAAACATTATCATAACTCTTATTACATTCCAACACCTCCTCATCATCTAAACATCATCTAATTACATTCGCTTCATAGGTTTAGTTTCTTCTTCTTCTACTTTTTCTTCTGATTTAACACGAACAGATGTTTAATCAAATTTATGACGTGGCATTTTGGGCATTCGCATCCTCTTCAACACTAGCTGAATCCAGCTTTTCTCACACCAATACAATCAACTTT</canonical>
            <polymorphic>CCGGTTATACTGCGGCTTTTCTCTTTGAACTGTATCTTTATCATAAATTAGCATTGCCCTTCACCCGATTCTTCGGCTCTTCTAAAAAGACGAAGAGAGAGTACTTCATCAAGAGAGAATCAGAGAATTCAACTCGTTTATCTTCCTGTCGCCGAACAACGCGCAAAGTCACCATCCACGAAATGTTTCACCAATTTGCACTTTCTCTGACCACACCATTGAACCATAGAAACTCCTGTTTACGGTGTTTTTTTTCAACTTCGGGAAAGGGCGTGGGAAAAACACGGTACATCAAAAAGAGCGAGGTGAGTTGAGGCGAAACGATTCCAATTTCTGAGGACGGCGTGTTGTATAGTCCTGAATAGAAACGAGTCAATGTATTCGATTCACTGATTTCTTCTCTTTATGATCTCCTCGTTCTTTTCATGTTTTTGTACCAGAAGGGACCCTGATCAGAACCGGGAAGAGAATACTGTTAAAGGGGATTCTAACCAACTGGRTTTTTTGTTTTTTTCTTGTATTAGGATGTTCCCAAAATTATCTATTCTCATAAAATTGCTTCGAAAAAATTCGGAAAAACACGAAATCCCTAAAAATGCCATCAATTCTCGTTTAAGTTGCCCACACAATGGCCTAGCACTAGGATTCCCGCGACCCTCTTGGACGAAAACTGGAGGCTCTTGCACACAGTTTTCAGAGATTTCCAAAATTTTCTGAACTTATAACCTTGTTTACCATAACCTTGTTTACAATAAAATACTTCTCTAAGTCTTAAACTGAAACATTATCATAACTCTTATTACATTCCAACACCTCCTCATCATCTAAACATCATCTAATTACATTCGCTTCATAGGTTTAGTTTCTTCTTCTTCTACTTTTTCTTCTGATTTAACACGAACAGATGTTTAATCAAATTTATGACGTGGCATTTTGGGCATTCGCATCCTCTTCAACACTAGCTGAATCCAGCTTTTCTCACACCAATACAATCAACTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTTTCATGTTTTTGTACCAG</pcr_primer_p1>
		<pcr_primer_p2>ACAAGGTTATGGTAAACAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>329</pcr_amplicon_size>
		<canonical_amplicon>TTCTTTTCATGTTTTTGTACCAGAAGGGACCCTGATCAGAACCGGGAAGAGAATACTGTTAAAGGGGATTCTAACCAACTGGTTTTTTTGTTTTTTTCTTGTATTAGGATGTTCCCAAAATTATCTATTCTCATAAAATTGCTTCGAAAAAATTCGGAAAAACACGAAATCCCTAAAAATGCCATCAATTCTCGTTTAAGTTGCCCACACAATGGCCTAGCACTAGGATTCCCGCGACCCTCTTGGACGAAAACTGGAGGCTCTTGCACACAGTTTTCAGAGATTTCCAAAATTTTCTGAACTTATAACCTTGTTTACCATAACCTTGT</canonical_amplicon>
		<polymorphic_amplicon>TTCTTTTCATGTTTTTGTACCAGAAGGGACCCTGATCAGAACCGGGAAGAGAATACTGTTAAAGGGGATTCTAACCAACTGGRTTTTTTGTTTTTTTCTTGTATTAGGATGTTCCCAAAATTATCTATTCTCATAAAATTGCTTCGAAAAAATTCGGAAAAACACGAAATCCCTAAAAATGCCATCAATTCTCGTTTAAGTTGCCCACACAATGGCCTAGCACTAGGATTCCCGCGACCCTCTTGGACGAAAACTGGAGGCTCTTGCACACAGTTTTCAGAGATTTCCAAAATTTTCTGAACTTATAACCTTGTTTACCATAACCTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25800</snp_id>
        <super_contig>c001701441.Contig1</super_contig>
        <contig_pos>93456</contig_pos>
        <strand>+</strand>
        <context>TCCCTGACAG[C/T]TGCTCAAATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGCTACCGCCGCAGAGTAAAGTATGTGTTGCACTGCTGTCCCTGACAG</left_flank>
        <right_flank>TGCTCAAATGCTCAATGGTTCCACGACATTTCCCCTCTCTCTATCCCTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTTCATCTCTATGCGAATGCATCTTTTCCGAATTTTGCTTTATTTTCTCCTTTTTCTCTTTTTTTGTTTTTTATCCTTTTTCTCTCTCAAAAATGACGAATTCAGTTTCTCTTCTTTTCTATCGGCTCTCTATAGCTATCTTTGTTATTCAATTAGATTCGTAAGCCTTTCTGTTCTTAGCATGTGGACACAATCAAAGTGGTACTTTATATTTTGTACTATTCCTGTCATTTATTCATGTGGAAGTATCCCAAGATTTTTCTATTTTTCATATACTTTTCCCTGCACCTACAACGCTTCACTGTTTCTTTAAGTTTTTCAGTTCCCTGTACTTTGCAAAACTGTTATGTCATGTGATTTGCTTGTTTTGATGTTGTAAAACTCCTCAATGTGTGCATTCGTATTTGTAGTTCTACTCCAATAACTTTGCTTTTTTCGCCCACCAACTTTGCTACCGCCGCAGAGTAAAGTATGTGTTGCACTGCTGTCCCTGACAGCTGCTCAAATGCTCAATGGTTCCACGACATTTCCCCTCTCTCTATCCCTCATCTTATAATAGTGGTTCACAGTTTGGGCACCCAGCGCCGCCCTAATTTTTCGCACATGCCTGTCTGCGAGGAGGAGGCGACCGACGACCTGGCGAACCGTCCGATCACCCCATTCCAAGCCGAAGTGGGCGTATCACATTGACATTCCATGACAATCGTTTCAAACTTTTACGATCATATGTGTTGCTGCTCATCATTACTTCCTCTCAAATTACTCTCCCCGCTGCTTGTTGTCTACCACATTTTGGCCTTTCATTTACTGAACAAATATTAGAGTTCGCCAACGCGATTTATCATTCGACCGATTTATCAGTTTACTCTCCTTGCGGTCTCTTTTGGGATACACGCCAGCACCTTGTAAATAGTTGTACAGCAAGAACGGAACTCCTCCTGGGGCATACACCATTAATTCAGTATAACCAAAATAGGAAAAGTCTGCCTAGTTTCCGA</canonical>
            <polymorphic>CTCTTCATCTCTATGCGAATGCATCTTTTCCGAATTTTGCTTTATTTTCTCCTTTTTCTCTTTTTTTGTTTTTTATCCTTTTTCTCTCTCAAAAATGACGAATTCAGTTTCTCTTCTTTTCTATCGGCTCTCTATAGCTATCTTTGTTATTCAATTAGATTCGTAAGCCTTTCTGTTCTTAGCATGTGGACACAATCAAAGTGGTACTTTATATTTTGTACTATTCCTGTCATTTATTCATGTGGAAGTATCCCAAGATTTTTCTATTTTTCATATACTTTTCCCTGCACCTACAACGCTTCACTGTTTCTTTAAGTTTTTCAGTTCCCTGTACTTTGCAAAACTGTTATGTCATGTGATTTGCTTGTTTTGATGTTGTAAAACTCCTCAATGTGTGCATTCGTATTTGTAGTTCTACTCCAATAACTTTGCTTTTTTCGCCCACCAACTTTGCTACCGCCGCAGAGTAAAGTATGTGTTGCACTGCTGTCCCTGACAGYTGCTCAAATGCTCAATGGTTCCACGACATTTCCCCTCTCTCTATCCCTCATCTTATAATAGTGGTTCACAGTTTGGGCACCCAGCGCCGCCCTAATTTTTCGCACATGCCTGTCTGCGAGGAGGAGGCGACCGACGACCTGGCGAACCGTCCGATCACCCCATTCCAAGCCGAAGTGGGCGTATCACATTGACATTCCATGACAATCGTTTCAAACTTTTACGATCATATGTGTTGCTGCTCATCATTACTTCCTCTCAAATTACTCTCCCCGCTGCTTGTTGTCTACCACATTTTGGCCTTTCATTTACTGAACAAATATTAGAGTTCGCCAACGCGATTTATCATTCGACCGATTTATCAGTTTACTCTCCTTGCGGTCTCTTTTGGGATACACGCCAGCACCTTGTAAATAGTTGTACAGCAAGAACGGAACTCCTCCTGGGGCATACACCATTAATTCAGTATAACCAAAATAGGAAAAGTCTGCCTAGTTTCCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>501 362 137</canonical_bands>
                <polymorphic_bands>863 137</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>462 224 150 87 40 37</canonical_bands>
                <polymorphic_bands>462 224 150 127 37</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>332 202 170 129 127 30 10</canonical_bands>
                <polymorphic_bands>502 202 129 127 30 10</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>499 274 227</canonical_bands>
                <polymorphic_bands>773 227</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>499 237 227 37</canonical_bands>
                <polymorphic_bands>736 227 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAAGTTTTTCAGTTCCCTGTA</pcr_primer_p1>
		<pcr_primer_p2>ATAAGATGAGGGATAGAGAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTAAGTTTTTCAGTTCCCTGTACTTTGCAAAACTGTTATGTCATGTGATTTGCTTGTTTTGATGTTGTAAAACTCCTCAATGTGTGCATTCGTATTTGTAGTTCTACTCCAATAACTTTGCTTTTTTCGCCCACCAACTTTGCTACCGCCGCAGAGTAAAGTATGTGTTGCACTGCTGTCCCTGACAGCTGCTCAAATGCTCAATGGTTCCACGACATTTCCCCTCTCTCTATCCCTCATCTTAT</canonical_amplicon>
		<polymorphic_amplicon>TTTAAGTTTTTCAGTTCCCTGTACTTTGCAAAACTGTTATGTCATGTGATTTGCTTGTTTTGATGTTGTAAAACTCCTCAATGTGTGCATTCGTATTTGTAGTTCTACTCCAATAACTTTGCTTTTTTCGCCCACCAACTTTGCTACCGCCGCAGAGTAAAGTATGTGTTGCACTGCTGTCCCTGACAGYTGCTCAAATGCTCAATGGTTCCACGACATTTCCCCTCTCTCTATCCCTCATCTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25801</snp_id>
        <super_contig>c001800644.Contig2</super_contig>
        <contig_pos>9240</contig_pos>
        <strand></strand>
        <context>aaaaatagaa[G/T]ttttggcttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAATGGCTGAAAATGCGATTTTTGGCCTAAAAAAGGCTGAAAAATAGAA</left_flank>
        <right_flank>TTTTGGCTTTAAAAAGGCTGAAAATTGGAATTTTCGGCTTCAAAAACTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGCAATCGAGAAAAGAGACATCGCCAAAAACGGATTGCCATCAAAAAAGAAAGGGGGCGGAGCTTCTGGTGAACGTGGGGGCGGGGCTAATTCACCGGAAGAAAAACAATTGAAACATTTAAAAAAAAGGAAAGCAATAAAAAATGTTACAAGCGAGAGTGAATAGAACAGGAGATATATATGAGCAATAATAAAGAAAAAAAGGGGGCGTGGCTTAGGAGAGATAGAGGGAGAAGTGGGCGGAGCTTGGGCGAAAAATGGGCATTTTTGGTTCAAAAAAAGGCTGAAAATTGAAATATTTGGCTAAAAATCGGTTTTCAGCAATCCAAAACCGCTGAAAATTATTAAAACTTCGGCTTAAAAAACCTGAAAATTGCGATTTTTGATCTCAAAAATTTGCAATTTTCAGCAATTAAAAAAACTGCTGAAAATGCACTTTTCCAGCTTAAAATGGCTGAAAATGCGATTTTTGGCCTAAAAAAGGCTGAAAAATAGAAGTTTTGGCTTTAAAAAGGCTGAAAATTGGAATTTTCGGCTTCAAAAACTGAAAAATGGCTTAAAAATCTGAAAACCGAATTTTTGTCTAAAAAATTGAGGAAAAAATTAGGCTCGGCCTCCTCCACAAATTCTTCTTCTCGCAGCAGCGACGAAAAGTGTCCGTAAATGCACATTAAATGACGCCAAATTGCGGACAAAAAGAACGAAGACAAACAAGACAGCGGGGGAAGAGAGAGATAAAGCAAATATAAGAGAGACACAGAGAAACAGAGAAAATGACACAGAATAAGAAGACTGAGATAGCCACGTCATCGACCTTTTTGACGAATTCTGGAGCGGATTTTTGGATTTTTTATGCTGAGCAATCCCCTTAGAGAGCGGGAACCACTCGTTTCTGCAAAAATTAAAAGTTTGAAGAGTTTTTTCTGGCTGAAAATTGGTAAGTCTTTTTTTCTGGAAATTTTGAAATTGGGATTTTTTTGGCTGAAAATGGCTGAAAG</canonical>
            <polymorphic>TTTGCAATCGAGAAAAGAGACATCGCCAAAAACGGATTGCCATCAAAAAAGAAAGGGGGCGGAGCTTCTGGTGAACGTGGGGGCGGGGCTAATTCACCGGAAGAAAAACAATTGAAACATTTAAAAAAAAGGAAAGCAATAAAAAATGTTACAAGCGAGAGTGAATAGAACAGGAGATATATATGAGCAATAATAAAGAAAAAAAGGGGGCGTGGCTTAGGAGAGATAGAGGGAGAAGTGGGCGGAGCTTGGGCGAAAAATGGGCATTTTTGGTTCAAAAAAAGGCTGAAAATTGAAATATTTGGCTAAAAATCGGTTTTCAGCAATCCAAAACCGCTGAAAATTATTAAAACTTCGGCTTAAAAAACCTGAAAATTGCGATTTTTGATCTCAAAAATTTGCAATTTTCAGCAATTAAAAAAACTGCTGAAAATGCACTTTTCCAGCTTAAAATGGCTGAAAATGCGATTTTTGGCCTAAAAAAGGCTGAAAAATAGAAKTTTTGGCTTTAAAAAGGCTGAAAATTGGAATTTTCGGCTTCAAAAACTGAAAAATGGCTTAAAAATCTGAAAACCGAATTTTTGTCTAAAAAATTGAGGAAAAAATTAGGCTCGGCCTCCTCCACAAATTCTTCTTCTCGCAGCAGCGACGAAAAGTGTCCGTAAATGCACATTAAATGACGCCAAATTGCGGACAAAAAGAACGAAGACAAACAAGACAGCGGGGGAAGAGAGAGATAAAGCAAATATAAGAGAGACACAGAGAAACAGAGAAAATGACACAGAATAAGAAGACTGAGATAGCCACGTCATCGACCTTTTTGACGAATTCTGGAGCGGATTTTTGGATTTTTTATGCTGAGCAATCCCCTTAGAGAGCGGGAACCACTCGTTTCTGCAAAAATTAAAAGTTTGAAGAGTTTTTTCTGGCTGAAAATTGGTAAGTCTTTTTTTCTGGAAATTTTGAAATTGGGATTTTTTTGGCTGAAAATGGCTGAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGGAGAGATAGAGGGAGAAGTG</pcr_primer_p1>
		<pcr_primer_p2>CGAGAAGAAGAATTTGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>423</pcr_amplicon_size>
		<canonical_amplicon>TAGGAGAGATAGAGGGAGAAGTGGGCGGAGCTTGGGCGAAAAATGGGCATTTTTGGTTCAAAAAAAGGCTGAAAATTGAAATATTTGGCTAAAAATCGGTTTTCAGCAATCCAAAACCGCTGAAAATTATTAAAACTTCGGCTTAAAAAACCTGAAAATTGCGATTTTTGATCTCAAAAATTTGCAATTTTCAGCAATTAAAAAAACTGCTGAAAATGCACTTTTCCAGCTTAAAATGGCTGAAAATGCGATTTTTGGCCTAAAAAAGGCTGAAAAATAGAAGTTTTGGCTTTAAAAAGGCTGAAAATTGGAATTTTCGGCTTCAAAAACTGAAAAATGGCTTAAAAATCTGAAAACCGAATTTTTGTCTAAAAAATTGAGGAAAAAATTAGGCTCGGCCTCCTCCACAAATTCTTCTTCTCG</canonical_amplicon>
		<polymorphic_amplicon>TAGGAGAGATAGAGGGAGAAGTGGGCGGAGCTTGGGCGAAAAATGGGCATTTTTGGTTCAAAAAAAGGCTGAAAATTGAAATATTTGGCTAAAAATCGGTTTTCAGCAATCCAAAACCGCTGAAAATTATTAAAACTTCGGCTTAAAAAACCTGAAAATTGCGATTTTTGATCTCAAAAATTTGCAATTTTCAGCAATTAAAAAAACTGCTGAAAATGCACTTTTCCAGCTTAAAATGGCTGAAAATGCGATTTTTGGCCTAAAAAAGGCTGAAAAATAGAAKTTTTGGCTTTAAAAAGGCTGAAAATTGGAATTTTCGGCTTCAAAAACTGAAAAATGGCTTAAAAATCTGAAAACCGAATTTTTGTCTAAAAAATTGAGGAAAAAATTAGGCTCGGCCTCCTCCACAAATTCTTCTTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25802</snp_id>
        <super_contig>c001800644.Contig2</super_contig>
        <contig_pos>9358</contig_pos>
        <strand>+</strand>
        <context>AGGCTCGGCC[C/T]CCTCCACAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAAACCGAATTTTTGTCTAAAAAATTGAGGAAAAAATTAGGCTCGGCC</left_flank>
        <right_flank>CCTCCACAAATTCTTCTTCTCGCAGCAGCGACGAAAAGTGTCCGTAAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTAAAAAAAAGGAAAGCAATAAAAAATGTTACAAGCGAGAGTGAATAGAACAGGAGATATATATGAGCAATAATAAAGAAAAAAAGGGGGCGTGGCTTAGGAGAGATAGAGGGAGAAGTGGGCGGAGCTTGGGCGAAAAATGGGCATTTTTGGTTCAAAAAAAGGCTGAAAATTGAAATATTTGGCTAAAAATCGGTTTTCAGCAATCCAAAACCGCTGAAAATTATTAAAACTTCGGCTTAAAAAACCTGAAAATTGCGATTTTTGATCTCAAAAATTTGCAATTTTCAGCAATTAAAAAAACTGCTGAAAATGCACTTTTCCAGCTTAAAATGGCTGAAAATGCGATTTTTGGCCTAAAAAAGGCTGAAAAATAGAAGTTTTGGCTTTAAAAAGGCTGAAAATTGGAATTTTCGGCTTCAAAAACTGAAAAATGGCTTAAAAATCTGAAAACCGAATTTTTGTCTAAAAAATTGAGGAAAAAATTAGGCTCGGCCTCCTCCACAAATTCTTCTTCTCGCAGCAGCGACGAAAAGTGTCCGTAAATGCACATTAAATGACGCCAAATTGCGGACAAAAAGAACGAAGACAAACAAGACAGCGGGGGAAGAGAGAGATAAAGCAAATATAAGAGAGACACAGAGAAACAGAGAAAATGACACAGAATAAGAAGACTGAGATAGCCACGTCATCGACCTTTTTGACGAATTCTGGAGCGGATTTTTGGATTTTTTATGCTGAGCAATCCCCTTAGAGAGCGGGAACCACTCGTTTCTGCAAAAATTAAAAGTTTGAAGAGTTTTTTCTGGCTGAAAATTGGTAAGTCTTTTTTTCTGGAAATTTTGAAATTGGGATTTTTTTGGCTGAAAATGGCTGAAAGTGATATTTCAAAAATCGAATTTTCGACGTAAAACTAGGATTTTCAAGGTTTTTTCCGGGCAAAAAAATGGTTAAAAAATTGGATTTTTTCGGCTGAAAATGACAAGGAAAAATGACTG</canonical>
            <polymorphic>ATTTAAAAAAAAGGAAAGCAATAAAAAATGTTACAAGCGAGAGTGAATAGAACAGGAGATATATATGAGCAATAATAAAGAAAAAAAGGGGGCGTGGCTTAGGAGAGATAGAGGGAGAAGTGGGCGGAGCTTGGGCGAAAAATGGGCATTTTTGGTTCAAAAAAAGGCTGAAAATTGAAATATTTGGCTAAAAATCGGTTTTCAGCAATCCAAAACCGCTGAAAATTATTAAAACTTCGGCTTAAAAAACCTGAAAATTGCGATTTTTGATCTCAAAAATTTGCAATTTTCAGCAATTAAAAAAACTGCTGAAAATGCACTTTTCCAGCTTAAAATGGCTGAAAATGCGATTTTTGGCCTAAAAAAGGCTGAAAAATAGAAGTTTTGGCTTTAAAAAGGCTGAAAATTGGAATTTTCGGCTTCAAAAACTGAAAAATGGCTTAAAAATCTGAAAACCGAATTTTTGTCTAAAAAATTGAGGAAAAAATTAGGCTCGGCCYCCTCCACAAATTCTTCTTCTCGCAGCAGCGACGAAAAGTGTCCGTAAATGCACATTAAATGACGCCAAATTGCGGACAAAAAGAACGAAGACAAACAAGACAGCGGGGGAAGAGAGAGATAAAGCAAATATAAGAGAGACACAGAGAAACAGAGAAAATGACACAGAATAAGAAGACTGAGATAGCCACGTCATCGACCTTTTTGACGAATTCTGGAGCGGATTTTTGGATTTTTTATGCTGAGCAATCCCCTTAGAGAGCGGGAACCACTCGTTTCTGCAAAAATTAAAAGTTTGAAGAGTTTTTTCTGGCTGAAAATTGGTAAGTCTTTTTTTCTGGAAATTTTGAAATTGGGATTTTTTTGGCTGAAAATGGCTGAAAGTGATATTTCAAAAATCGAATTTTCGACGTAAAACTAGGATTTTCAAGGTTTTTTCCGGGCAAAAAAATGGTTAAAAAATTGGATTTTTTCGGCTGAAAATGACAAGGAAAAATGACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTAGGAGAGATAGAGGGAGAAG</pcr_primer_p1>
		<pcr_primer_p2>GTGCATTTACGGACACTTTT</pcr_primer_p2>
		<pcr_amplicon_size>456</pcr_amplicon_size>
		<canonical_amplicon>CTTAGGAGAGATAGAGGGAGAAGTGGGCGGAGCTTGGGCGAAAAATGGGCATTTTTGGTTCAAAAAAAGGCTGAAAATTGAAATATTTGGCTAAAAATCGGTTTTCAGCAATCCAAAACCGCTGAAAATTATTAAAACTTCGGCTTAAAAAACCTGAAAATTGCGATTTTTGATCTCAAAAATTTGCAATTTTCAGCAATTAAAAAAACTGCTGAAAATGCACTTTTCCAGCTTAAAATGGCTGAAAATGCGATTTTTGGCCTAAAAAAGGCTGAAAAATAGAAGTTTTGGCTTTAAAAAGGCTGAAAATTGGAATTTTCGGCTTCAAAAACTGAAAAATGGCTTAAAAATCTGAAAACCGAATTTTTGTCTAAAAAATTGAGGAAAAAATTAGGCTCGGCCTCCTCCACAAATTCTTCTTCTCGCAGCAGCGACGAAAAGTGTCCGTAAATGCAC</canonical_amplicon>
		<polymorphic_amplicon>CTTAGGAGAGATAGAGGGAGAAGTGGGCGGAGCTTGGGCGAAAAATGGGCATTTTTGGTTCAAAAAAAGGCTGAAAATTGAAATATTTGGCTAAAAATCGGTTTTCAGCAATCCAAAACCGCTGAAAATTATTAAAACTTCGGCTTAAAAAACCTGAAAATTGCGATTTTTGATCTCAAAAATTTGCAATTTTCAGCAATTAAAAAAACTGCTGAAAATGCACTTTTCCAGCTTAAAATGGCTGAAAATGCGATTTTTGGCCTAAAAAAGGCTGAAAAATAGAAGTTTTGGCTTTAAAAAGGCTGAAAATTGGAATTTTCGGCTTCAAAAACTGAAAAATGGCTTAAAAATCTGAAAACCGAATTTTTGTCTAAAAAATTGAGGAAAAAATTAGGCTCGGCCYCCTCCACAAATTCTTCTTCTCGCAGCAGCGACGAAAAGTGTCCGTAAATGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25803</snp_id>
        <super_contig>c001800644.Contig2</super_contig>
        <contig_pos>9490</contig_pos>
        <strand>+</strand>
        <context>AAGCAAATAT[A/G]AGAGAGACAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAACGAAGACAAACAAGACAGCGGGGGAAGAGAGAGATAAAGCAAATAT</left_flank>
        <right_flank>AGAGAGACACAGAGAAACAGAGAAAATGACACAGAATAAGAAGACTGAGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGCGAAAAATGGGCATTTTTGGTTCAAAAAAAGGCTGAAAATTGAAATATTTGGCTAAAAATCGGTTTTCAGCAATCCAAAACCGCTGAAAATTATTAAAACTTCGGCTTAAAAAACCTGAAAATTGCGATTTTTGATCTCAAAAATTTGCAATTTTCAGCAATTAAAAAAACTGCTGAAAATGCACTTTTCCAGCTTAAAATGGCTGAAAATGCGATTTTTGGCCTAAAAAAGGCTGAAAAATAGAAGTTTTGGCTTTAAAAAGGCTGAAAATTGGAATTTTCGGCTTCAAAAACTGAAAAATGGCTTAAAAATCTGAAAACCGAATTTTTGTCTAAAAAATTGAGGAAAAAATTAGGCTCGGCCTCCTCCACAAATTCTTCTTCTCGCAGCAGCGACGAAAAGTGTCCGTAAATGCACATTAAATGACGCCAAATTGCGGACAAAAAGAACGAAGACAAACAAGACAGCGGGGGAAGAGAGAGATAAAGCAAATATAAGAGAGACACAGAGAAACAGAGAAAATGACACAGAATAAGAAGACTGAGATAGCCACGTCATCGACCTTTTTGACGAATTCTGGAGCGGATTTTTGGATTTTTTATGCTGAGCAATCCCCTTAGAGAGCGGGAACCACTCGTTTCTGCAAAAATTAAAAGTTTGAAGAGTTTTTTCTGGCTGAAAATTGGTAAGTCTTTTTTTCTGGAAATTTTGAAATTGGGATTTTTTTGGCTGAAAATGGCTGAAAGTGATATTTCAAAAATCGAATTTTCGACGTAAAACTAGGATTTTCAAGGTTTTTTCCGGGCAAAAAAATGGTTAAAAAATTGGATTTTTTCGGCTGAAAATGACAAGGAAAAATGACTGAAAATAGCAGAAAATTGGCTGAAAATTAGCCAATTTTTTAAACTGAAATTTTAGATGTCTCAAAACTGATGAAATTGGGATTTTTTTGGCTGAAAATGATAAAGAAAAAATATCAATTTCTCGGCTAGAAAC</canonical>
            <polymorphic>GGGCGAAAAATGGGCATTTTTGGTTCAAAAAAAGGCTGAAAATTGAAATATTTGGCTAAAAATCGGTTTTCAGCAATCCAAAACCGCTGAAAATTATTAAAACTTCGGCTTAAAAAACCTGAAAATTGCGATTTTTGATCTCAAAAATTTGCAATTTTCAGCAATTAAAAAAACTGCTGAAAATGCACTTTTCCAGCTTAAAATGGCTGAAAATGCGATTTTTGGCCTAAAAAAGGCTGAAAAATAGAAGTTTTGGCTTTAAAAAGGCTGAAAATTGGAATTTTCGGCTTCAAAAACTGAAAAATGGCTTAAAAATCTGAAAACCGAATTTTTGTCTAAAAAATTGAGGAAAAAATTAGGCTCGGCCTCCTCCACAAATTCTTCTTCTCGCAGCAGCGACGAAAAGTGTCCGTAAATGCACATTAAATGACGCCAAATTGCGGACAAAAAGAACGAAGACAAACAAGACAGCGGGGGAAGAGAGAGATAAAGCAAATATRAGAGAGACACAGAGAAACAGAGAAAATGACACAGAATAAGAAGACTGAGATAGCCACGTCATCGACCTTTTTGACGAATTCTGGAGCGGATTTTTGGATTTTTTATGCTGAGCAATCCCCTTAGAGAGCGGGAACCACTCGTTTCTGCAAAAATTAAAAGTTTGAAGAGTTTTTTCTGGCTGAAAATTGGTAAGTCTTTTTTTCTGGAAATTTTGAAATTGGGATTTTTTTGGCTGAAAATGGCTGAAAGTGATATTTCAAAAATCGAATTTTCGACGTAAAACTAGGATTTTCAAGGTTTTTTCCGGGCAAAAAAATGGTTAAAAAATTGGATTTTTTCGGCTGAAAATGACAAGGAAAAATGACTGAAAATAGCAGAAAATTGGCTGAAAATTAGCCAATTTTTTAAACTGAAATTTTAGATGTCTCAAAACTGATGAAATTGGGATTTTTTTGGCTGAAAATGATAAAGAAAAAATATCAATTTCTCGGCTAGAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACATTAAATGACGCCAAAT</pcr_primer_p1>
		<pcr_primer_p2>TAATTTTTGCAGAAACGAGTG</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>CACATTAAATGACGCCAAATTGCGGACAAAAAGAACGAAGACAAACAAGACAGCGGGGGAAGAGAGAGATAAAGCAAATATAAGAGAGACACAGAGAAACAGAGAAAATGACACAGAATAAGAAGACTGAGATAGCCACGTCATCGACCTTTTTGACGAATTCTGGAGCGGATTTTTGGATTTTTTATGCTGAGCAATCCCCTTAGAGAGCGGGAACCACTCGTTTCTGCAAAAATTA</canonical_amplicon>
		<polymorphic_amplicon>CACATTAAATGACGCCAAATTGCGGACAAAAAGAACGAAGACAAACAAGACAGCGGGGGAAGAGAGAGATAAAGCAAATATRAGAGAGACACAGAGAAACAGAGAAAATGACACAGAATAAGAAGACTGAGATAGCCACGTCATCGACCTTTTTGACGAATTCTGGAGCGGATTTTTGGATTTTTTATGCTGAGCAATCCCCTTAGAGAGCGGGAACCACTCGTTTCTGCAAAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25804</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>9709</contig_pos>
        <strand>+</strand>
        <context>TTATTATTTT[C/G]TCACCCTGRG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCCTCTGTCGTCTCTCAATTTCCCCTGCTCTCTAATTTTGTTATTATTTT</left_flank>
        <right_flank>TCACCCTGAGACAAGGTTCCCTCTCACATGAATTGGTATTCCAAAAGCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGAAAATATAAATAGGGCGTAGATTTCAGGATTACAGTAGGTTGTATGCGTGAAAATATAGGGTGACCCCAAGACTGTGCAAAAAGGCGGCTGGCCGCGGCCGGCCTCAGCCACGGCTCGATTTTTGAAGCCGAGGCCGGCCGCGGCTTTTTTGTGAAAGCCGTGAAAAGCCGCGGCTAGCCGAGGCCGCCCGCGGATAGCCTCATGAAAACGCGTGAAGTGAAAATCAATTAGTTTTTGAATAATTTCGTTTTTTTGTCCTACTTTTCAAAAAAAAATTCTACGTTTCTTATGAAACAATTATTTCAAAAGGCCGTGAAAAGTCGCACGGCTAGCTGCTCCAGTTATCTTTTTTATTCTCGATATCCCCAACCTTCAATTTCATTCCACCTCTCCGCCACCCCAAAAATTGAATTAATTCCTCTCACATCGTAAAAATCACCATTGCCTCTGTCGTCTCTCAATTTCCCCTGCTCTCTAATTTTGTTATTATTTTGTCACCCTGAGACAAGGTTCCCTCTCACATGAATTGGTATTCCAAAAGCTCATTGTCCAATTATGTTTTTTTTTGAAACGAAGGAAGTGAAAAAAGGAAGAAGAGAAGAAAAAAGGGGCGGAGTCAGAGCAATCGAAAGAAGGAGGAGAAAGGAGGGTCCAAATATAAGCGATTGCATGTTTGGTTTCCATTTGCCACTTCTCTATTTTTCTATCCATATCAAGATTCTTCTTGGATTCCGGAGTCTAGAAGGGCAACATTTGCTCCTTTTTTCTGTTTCTTGTTGAACATTTAGTCAGTTGATTTTGGATTTTTTAATTGAATCTAAGCATCTTTGTGAACCTAGAAGATATTAACTGGTTTCTTATTTCTGAATTATGACCTTCTCGTTGATTCATGAGGAAGCATCGGAAATGAGCATAAGAATAATCTCCAGCCATTAATATTCTAAAAATTTTGTCCAGTCCTTTGACAGATTTCAAAGTAAACTTGTTTCCGGAC</canonical>
            <polymorphic>TTTCGAAAATATAAATAGGGCGTAGATTTCAGGATTACAGTAGGTTGTATGCGTGAAAATATAGGGTGACCCCAAGACTGTGCAAAAAGGCGGCTGGCCGCGGCCGGCCTCAGCCACGGCTCGATTTTTGAAGCCGAGGCCGGCCGCGGCTTTTTTGTGAAAGCCGTGAAAAGCCGCGGCTAGCCGAGGCCGCCCGCGGATAGCCTCATGAAAACGCGTGAAGTGAAAATCAATTAGTTTTTGAATAATTTCGTTTTTTTGTCCTACTTTTCAAAAAAAAATTCTACGTTTCTTATGAAACAATTATTTCAAAAGGCCGTGAAAAGTCGCACGGCTAGCTGCTCCAGTTATCTTTTTTATTCTCGATATCCCCAACCTTCAATTTCATTCCACCTCTCCGCCACCCCAAAAATTGAATTAATTCCTCTCACATCGTAAAAATCACCATTGCCTCTGTCGTCTCTCAATTTCCCCTGCTCTCTAATTTTGTTATTATTTTSTCACCCTGAGACAAGGTTCCCTCTCACATGAATTGGTATTCCAAAAGCTCATTGTCCAATTATGTTTTTTTTTGAAACGAAGGAAGTGAAAAAAGGAAGAAGAGAAGAAAAAAGGGGCGGAGTCAGAGCAATCGAAAGAAGGAGGAGAAAGGAGGGTCCAAATATAAGCGATTGCATGTTTGGTTTCCATTTGCCACTTCTCTATTTTTCTATCCATATCAAGATTCTTCTTGGATTCCGGAGTCTAGAAGGGCAACATTTGCTCCTTTTTTCTGTTTCTTGTTGAACATTTAGTCAGTTGATTTTGGATTTTTTAATTGAATCTAAGCATCTTTGTGAACCTAGAAGATATTAACTGGTTTCTTATTTCTGAATTATGACCTTCTCGTTGATTCATGAGGAAGCATCGGAAATGAGCATAAGAATAATCTCCAGCCATTAATATTCTAAAAATTTTGTCCAGTCCTTTGACAGATTTCAAAGTAAACTTGTTTCCGGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 434 65</canonical_bands>
                <polymorphic_bands>935 65</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>501 434 65</canonical_bands>
                <polymorphic_bands>935 65</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATTCCTCTCACATCGTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTATATTTGGACCCTCCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAATTCCTCTCACATCGTAAAAATCACCATTGCCTCTGTCGTCTCTCAATTTCCCCTGCTCTCTAATTTTGTTATTATTTTGTCACCCTGAGACAAGGTTCCCTCTCACATGAATTGGTATTCCAAAAGCTCATTGTCCAATTATGTTTTTTTTTGAAACGAAGGAAGTGAAAAAAGGAAGAAGAGAAGAAAAAAGGGGCGGAGTCAGAGCAATCGAAAGAAGGAGGAGAAAGGAGGGTCCAAATATAAG</canonical_amplicon>
		<polymorphic_amplicon>TAATTCCTCTCACATCGTAAAAATCACCATTGCCTCTGTCGTCTCTCAATTTCCCCTGCTCTCTAATTTTGTTATTATTTTSTCACCCTGAGACAAGGTTCCCTCTCACATGAATTGGTATTCCAAAAGCTCATTGTCCAATTATGTTTTTTTTTGAAACGAAGGAAGTGAAAAAAGGAAGAAGAGAAGAAAAAAGGGGCGGAGTCAGAGCAATCGAAAGAAGGAGGAGAAAGGAGGGTCCAAATATAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25805</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>9718</contig_pos>
        <strand>+</strand>
        <context>TSTCACCCTG[A/G]GACAAGGTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCTCTCAATTTCCCCTGCTCTCTAATTTTGTTATTATTTTGTCACCCTG</left_flank>
        <right_flank>GACAAGGTTCCCTCTCACATGAATTGGTATTCCAAAAGCTCATTGTCCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATAAATAGGGCGTAGATTTCAGGATTACAGTAGGTTGTATGCGTGAAAATATAGGGTGACCCCAAGACTGTGCAAAAAGGCGGCTGGCCGCGGCCGGCCTCAGCCACGGCTCGATTTTTGAAGCCGAGGCCGGCCGCGGCTTTTTTGTGAAAGCCGTGAAAAGCCGCGGCTAGCCGAGGCCGCCCGCGGATAGCCTCATGAAAACGCGTGAAGTGAAAATCAATTAGTTTTTGAATAATTTCGTTTTTTTGTCCTACTTTTCAAAAAAAAATTCTACGTTTCTTATGAAACAATTATTTCAAAAGGCCGTGAAAAGTCGCACGGCTAGCTGCTCCAGTTATCTTTTTTATTCTCGATATCCCCAACCTTCAATTTCATTCCACCTCTCCGCCACCCCAAAAATTGAATTAATTCCTCTCACATCGTAAAAATCACCATTGCCTCTGTCGTCTCTCAATTTCCCCTGCTCTCTAATTTTGTTATTATTTTGTCACCCTGAGACAAGGTTCCCTCTCACATGAATTGGTATTCCAAAAGCTCATTGTCCAATTATGTTTTTTTTTGAAACGAAGGAAGTGAAAAAAGGAAGAAGAGAAGAAAAAAGGGGCGGAGTCAGAGCAATCGAAAGAAGGAGGAGAAAGGAGGGTCCAAATATAAGCGATTGCATGTTTGGTTTCCATTTGCCACTTCTCTATTTTTCTATCCATATCAAGATTCTTCTTGGATTCCGGAGTCTAGAAGGGCAACATTTGCTCCTTTTTTCTGTTTCTTGTTGAACATTTAGTCAGTTGATTTTGGATTTTTTAATTGAATCTAAGCATCTTTGTGAACCTAGAAGATATTAACTGGTTTCTTATTTCTGAATTATGACCTTCTCGTTGATTCATGAGGAAGCATCGGAAATGAGCATAAGAATAATCTCCAGCCATTAATATTCTAAAAATTTTGTCCAGTCCTTTGACAGATTTCAAAGTAAACTTGTTTCCGGACGATTTGGAA</canonical>
            <polymorphic>TATAAATAGGGCGTAGATTTCAGGATTACAGTAGGTTGTATGCGTGAAAATATAGGGTGACCCCAAGACTGTGCAAAAAGGCGGCTGGCCGCGGCCGGCCTCAGCCACGGCTCGATTTTTGAAGCCGAGGCCGGCCGCGGCTTTTTTGTGAAAGCCGTGAAAAGCCGCGGCTAGCCGAGGCCGCCCGCGGATAGCCTCATGAAAACGCGTGAAGTGAAAATCAATTAGTTTTTGAATAATTTCGTTTTTTTGTCCTACTTTTCAAAAAAAAATTCTACGTTTCTTATGAAACAATTATTTCAAAAGGCCGTGAAAAGTCGCACGGCTAGCTGCTCCAGTTATCTTTTTTATTCTCGATATCCCCAACCTTCAATTTCATTCCACCTCTCCGCCACCCCAAAAATTGAATTAATTCCTCTCACATCGTAAAAATCACCATTGCCTCTGTCGTCTCTCAATTTCCCCTGCTCTCTAATTTTGTTATTATTTTGTCACCCTGRGACAAGGTTCCCTCTCACATGAATTGGTATTCCAAAAGCTCATTGTCCAATTATGTTTTTTTTTGAAACGAAGGAAGTGAAAAAAGGAAGAAGAGAAGAAAAAAGGGGCGGAGTCAGAGCAATCGAAAGAAGGAGGAGAAAGGAGGGTCCAAATATAAGCGATTGCATGTTTGGTTTCCATTTGCCACTTCTCTATTTTTCTATCCATATCAAGATTCTTCTTGGATTCCGGAGTCTAGAAGGGCAACATTTGCTCCTTTTTTCTGTTTCTTGTTGAACATTTAGTCAGTTGATTTTGGATTTTTTAATTGAATCTAAGCATCTTTGTGAACCTAGAAGATATTAACTGGTTTCTTATTTCTGAATTATGACCTTCTCGTTGATTCATGAGGAAGCATCGGAAATGAGCATAAGAATAATCTCCAGCCATTAATATTCTAAAAATTTTGTCCAGTCCTTTGACAGATTTCAAAGTAAACTTGTTTCCGGACGATTTGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>397 318 185 100</canonical_bands>
                <polymorphic_bands>715 185 100</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATTCCTCTCACATCGTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTATATTTGGACCCTCCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAATTCCTCTCACATCGTAAAAATCACCATTGCCTCTGTCGTCTCTCAATTTCCCCTGCTCTCTAATTTTGTTATTATTTTGTCACCCTGAGACAAGGTTCCCTCTCACATGAATTGGTATTCCAAAAGCTCATTGTCCAATTATGTTTTTTTTTGAAACGAAGGAAGTGAAAAAAGGAAGAAGAGAAGAAAAAAGGGGCGGAGTCAGAGCAATCGAAAGAAGGAGGAGAAAGGAGGGTCCAAATATAAG</canonical_amplicon>
		<polymorphic_amplicon>TAATTCCTCTCACATCGTAAAAATCACCATTGCCTCTGTCGTCTCTCAATTTCCCCTGCTCTCTAATTTTGTTATTATTTTGTCACCCTGRGACAAGGTTCCCTCTCACATGAATTGGTATTCCAAAAGCTCATTGTCCAATTATGTTTTTTTTTGAAACGAAGGAAGTGAAAAAAGGAAGAAGAGAAGAAAAAAGGGGCGGAGTCAGAGCAATCGAAAGAAGGAGGAGAAAGGAGGGTCCAAATATAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25806</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>86681</contig_pos>
        <strand>+</strand>
        <context>CGCGCTCTGG[C/T]CACTCTMATC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAACCCGGGAAGAGTCGGTACATGGGCGCATACGTATAGCGCGCTCTGG</left_flank>
        <right_flank>CACTCTAATCAACTCTGGTTCCTCTGCATTTGACCGTGAAAATCTTTCGC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTGAATTTTCAAATTTTTTGTTCAAATTTGGAGAATCCGGGCCCGCTGGGCCAGGTATGGCCGAGGAGTCACGAGCCAGGCCCTGATTTTGCAAGTATGAAAAAAATCAACTTTCACAGATTTCCTTGGAATTCTGTATTTTTTAAAGGTTTTTTTTTGTTTACAAGCCACTTCCAATTTGACTCTTTAAACGGCGAAAATGTTTACAAAATACTTTAAAAAACCCAGAAATCGCAATGAAATGTCTGAAAATCCATGAAATTAATTGAAATTAAATTACGTTGAAATTACCCAGAATTTTCCCATAGATTCTTCTCTTTTTATTTCCCCTCAAAAATCCCTTCAATTTTTCATTTTCACAGCTCCCCACTCTTCGATCCCTTTTCCTCCGTCTCTTCTCCTCCGCTAAGCCCCGCCCACTCTACACACAAAACATAGCGGGCGGCGGAACCCGGGAAGAGTCGGTACATGGGCGCATACGTATAGCGCGCTCTGGTCACTCTAATCAACTCTGGTTCCTCTGCATTTGACCGTGAAAATCTTTCGCCTTTTACTAAAGATTTCCGTGCAAAGGAGCAAACTTTGAGTATTATTACCAATTTTTGGAGTCCCCTCGAAAGAGCGGGACAAAAGTAAAGTCACAAAAGTACTCAGAAACATCTGAAATCGCTGCTTTGTGATGTGAAAATCTTGGGATCGCCGGCTGAAATAAGAACCTTGAAGACGTTTTCGGACTCAATCCTTGTGTTAATTCGAGAATAGAAAACATCTGAATGCATGAAAGTTTATTTATTAAAACGGCAGTAAAGCTTCAAAAAAGACAAAAGATCATTACAATTATTTACTACAAGCTTTCATAGGAGTTCCAGTGATGAAAAGAATTACTTCTTGTTTCCAGTGATGTGAAGGATGCCAGATCCGTCCAACTTGCTCTTGATGGTCGATGGATCGGTTCCCTTTGGAAGTCTGTAGCATCTGGTGATACTGCGAGTGATGG</canonical>
            <polymorphic>TATTTGAATTTTCAAATTTTTTGTTCAAATTTGGAGAATCCGGGCCCGCTGGGCCAGGTATGGCCGAGGAGTCACGAGCCAGGCCCTGATTTTGCAAGTATGAAAAAAATCAACTTTCACAGATTTCCTTGGAATTCTGTATTTTTTAAAGGTTTTTTTTTGTTTACAAGCCACTTCCAATTTGACTCTTTAAACGGCGAAAATGTTTACAAAATACTTTAAAAAACCCAGAAATCGCAATGAAATGTCTGAAAATCCATGAAATTAATTGAAATTAAATTACGTTGAAATTACCCAGAATTTTCCCATAGATTCTTCTCTTTTTATTTCCCCTCAAAAATCCCTTCAATTTTTCATTTTCACAGCTCCCCACTCTTCGATCCCTTTTCCTCCGTCTCTTCTCCTCCGCTAAGCCCCGCCCACTCTACACACAAAACATAGCGGGCGGCGGAACCCGGGAAGAGTCGGTACATGGGCGCATACGTATAGCGCGCTCTGGYCACTCTAATCAACTCTGGTTCCTCTGCATTTGACCGTGAAAATCTTTCGCCTTTTACTAAAGATTTCCGTGCAAAGGAGCAAACTTTGAGTATTATTACCAATTTTTGGAGTCCCCTCGAAAGAGCGGGACAAAAGTAAAGTCACAAAAGTACTCAGAAACATCTGAAATCGCTGCTTTGTGATGTGAAAATCTTGGGATCGCCGGCTGAAATAAGAACCTTGAAGACGTTTTCGGACTCAATCCTTGTGTTAATTCGAGAATAGAAAACATCTGAATGCATGAAAGTTTATTTATTAAAACGGCAGTAAAGCTTCAAAAAAGACAAAAGATCATTACAATTATTTACTACAAGCTTTCATAGGAGTTCCAGTGATGAAAAGAATTACTTCTTGTTTCCAGTGATGTGAAGGATGCCAGATCCGTCCAACTTGCTCTTGATGGTCGATGGATCGGTTCCCTTTGGAAGTCTGTAGCATCTGGTGATACTGCGAGTGATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>428 360 142 70</canonical_bands>
                <polymorphic_bands>570 360 70</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>428 360 142 70</canonical_bands>
                <polymorphic_bands>570 360 70</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTTTATTTCCCCTCAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATCTTTAGTAAAAGGCGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTTTTTATTTCCCCTCAAAAATCCCTTCAATTTTTCATTTTCACAGCTCCCCACTCTTCGATCCCTTTTCCTCCGTCTCTTCTCCTCCGCTAAGCCCCGCCCACTCTACACACAAAACATAGCGGGCGGCGGAACCCGGGAAGAGTCGGTACATGGGCGCATACGTATAGCGCGCTCTGGTCACTCTAATCAACTCTGGTTCCTCTGCATTTGACCGTGAAAATCTTTCGCCTTTTACTAAAGATTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTTATTTCCCCTCAAAAATCCCTTCAATTTTTCATTTTCACAGCTCCCCACTCTTCGATCCCTTTTCCTCCGTCTCTTCTCCTCCGCTAAGCCCCGCCCACTCTACACACAAAACATAGCGGGCGGCGGAACCCGGGAAGAGTCGGTACATGGGCGCATACGTATAGCGCGCTCTGGYCACTCTAATCAACTCTGGTTCCTCTGCATTTGACCGTGAAAATCTTTCGCCTTTTACTAAAGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25807</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>86688</contig_pos>
        <strand>+</strand>
        <context>TGGYCACTCT[A/C]ATCAACTCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGGAAGAGTCGGTACATGGGCGCATACGTATAGCGCGCTCTGGTCACTCT</left_flank>
        <right_flank>ATCAACTCTGGTTCCTCTGCATTTGACCGTGAAAATCTTTCGCCTTTTAC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTCAAATTTTTTGTTCAAATTTGGAGAATCCGGGCCCGCTGGGCCAGGTATGGCCGAGGAGTCACGAGCCAGGCCCTGATTTTGCAAGTATGAAAAAAATCAACTTTCACAGATTTCCTTGGAATTCTGTATTTTTTAAAGGTTTTTTTTTGTTTACAAGCCACTTCCAATTTGACTCTTTAAACGGCGAAAATGTTTACAAAATACTTTAAAAAACCCAGAAATCGCAATGAAATGTCTGAAAATCCATGAAATTAATTGAAATTAAATTACGTTGAAATTACCCAGAATTTTCCCATAGATTCTTCTCTTTTTATTTCCCCTCAAAAATCCCTTCAATTTTTCATTTTCACAGCTCCCCACTCTTCGATCCCTTTTCCTCCGTCTCTTCTCCTCCGCTAAGCCCCGCCCACTCTACACACAAAACATAGCGGGCGGCGGAACCCGGGAAGAGTCGGTACATGGGCGCATACGTATAGCGCGCTCTGGTCACTCTAATCAACTCTGGTTCCTCTGCATTTGACCGTGAAAATCTTTCGCCTTTTACTAAAGATTTCCGTGCAAAGGAGCAAACTTTGAGTATTATTACCAATTTTTGGAGTCCCCTCGAAAGAGCGGGACAAAAGTAAAGTCACAAAAGTACTCAGAAACATCTGAAATCGCTGCTTTGTGATGTGAAAATCTTGGGATCGCCGGCTGAAATAAGAACCTTGAAGACGTTTTCGGACTCAATCCTTGTGTTAATTCGAGAATAGAAAACATCTGAATGCATGAAAGTTTATTTATTAAAACGGCAGTAAAGCTTCAAAAAAGACAAAAGATCATTACAATTATTTACTACAAGCTTTCATAGGAGTTCCAGTGATGAAAAGAATTACTTCTTGTTTCCAGTGATGTGAAGGATGCCAGATCCGTCCAACTTGCTCTTGATGGTCGATGGATCGGTTCCCTTTGGAAGTCTGTAGCATCTGGTGATACTGCGAGTGATGGTTCCGAA</canonical>
            <polymorphic>ATTTTCAAATTTTTTGTTCAAATTTGGAGAATCCGGGCCCGCTGGGCCAGGTATGGCCGAGGAGTCACGAGCCAGGCCCTGATTTTGCAAGTATGAAAAAAATCAACTTTCACAGATTTCCTTGGAATTCTGTATTTTTTAAAGGTTTTTTTTTGTTTACAAGCCACTTCCAATTTGACTCTTTAAACGGCGAAAATGTTTACAAAATACTTTAAAAAACCCAGAAATCGCAATGAAATGTCTGAAAATCCATGAAATTAATTGAAATTAAATTACGTTGAAATTACCCAGAATTTTCCCATAGATTCTTCTCTTTTTATTTCCCCTCAAAAATCCCTTCAATTTTTCATTTTCACAGCTCCCCACTCTTCGATCCCTTTTCCTCCGTCTCTTCTCCTCCGCTAAGCCCCGCCCACTCTACACACAAAACATAGCGGGCGGCGGAACCCGGGAAGAGTCGGTACATGGGCGCATACGTATAGCGCGCTCTGGTCACTCTMATCAACTCTGGTTCCTCTGCATTTGACCGTGAAAATCTTTCGCCTTTTACTAAAGATTTCCGTGCAAAGGAGCAAACTTTGAGTATTATTACCAATTTTTGGAGTCCCCTCGAAAGAGCGGGACAAAAGTAAAGTCACAAAAGTACTCAGAAACATCTGAAATCGCTGCTTTGTGATGTGAAAATCTTGGGATCGCCGGCTGAAATAAGAACCTTGAAGACGTTTTCGGACTCAATCCTTGTGTTAATTCGAGAATAGAAAACATCTGAATGCATGAAAGTTTATTTATTAAAACGGCAGTAAAGCTTCAAAAAAGACAAAAGATCATTACAATTATTTACTACAAGCTTTCATAGGAGTTCCAGTGATGAAAAGAATTACTTCTTGTTTCCAGTGATGTGAAGGATGCCAGATCCGTCCAACTTGCTCTTGATGGTCGATGGATCGGTTCCCTTTGGAAGTCTGTAGCATCTGGTGATACTGCGAGTGATGGTTCCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTTATTTCCCCTCAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATCTTTAGTAAAAGGCGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTTTTTATTTCCCCTCAAAAATCCCTTCAATTTTTCATTTTCACAGCTCCCCACTCTTCGATCCCTTTTCCTCCGTCTCTTCTCCTCCGCTAAGCCCCGCCCACTCTACACACAAAACATAGCGGGCGGCGGAACCCGGGAAGAGTCGGTACATGGGCGCATACGTATAGCGCGCTCTGGTCACTCTAATCAACTCTGGTTCCTCTGCATTTGACCGTGAAAATCTTTCGCCTTTTACTAAAGATTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTTATTTCCCCTCAAAAATCCCTTCAATTTTTCATTTTCACAGCTCCCCACTCTTCGATCCCTTTTCCTCCGTCTCTTCTCCTCCGCTAAGCCCCGCCCACTCTACACACAAAACATAGCGGGCGGCGGAACCCGGGAAGAGTCGGTACATGGGCGCATACGTATAGCGCGCTCTGGTCACTCTMATCAACTCTGGTTCCTCTGCATTTGACCGTGAAAATCTTTCGCCTTTTACTAAAGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25808</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>86817</contig_pos>
        <strand>+</strand>
        <context>CGGGACAAAA[A/G]TAAAGTSACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAGTATTATTACCAATTTTTGGAGTCCCCTCGAAAGAGCGGGACAAAA</left_flank>
        <right_flank>TAAAGTCACAAAAGTACTCAGAAACATCTGAAATCGCTGCTTTGTGATGT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTATTTTTTAAAGGTTTTTTTTTGTTTACAAGCCACTTCCAATTTGACTCTTTAAACGGCGAAAATGTTTACAAAATACTTTAAAAAACCCAGAAATCGCAATGAAATGTCTGAAAATCCATGAAATTAATTGAAATTAAATTACGTTGAAATTACCCAGAATTTTCCCATAGATTCTTCTCTTTTTATTTCCCCTCAAAAATCCCTTCAATTTTTCATTTTCACAGCTCCCCACTCTTCGATCCCTTTTCCTCCGTCTCTTCTCCTCCGCTAAGCCCCGCCCACTCTACACACAAAACATAGCGGGCGGCGGAACCCGGGAAGAGTCGGTACATGGGCGCATACGTATAGCGCGCTCTGGTCACTCTAATCAACTCTGGTTCCTCTGCATTTGACCGTGAAAATCTTTCGCCTTTTACTAAAGATTTCCGTGCAAAGGAGCAAACTTTGAGTATTATTACCAATTTTTGGAGTCCCCTCGAAAGAGCGGGACAAAAGTAAAGTCACAAAAGTACTCAGAAACATCTGAAATCGCTGCTTTGTGATGTGAAAATCTTGGGATCGCCGGCTGAAATAAGAACCTTGAAGACGTTTTCGGACTCAATCCTTGTGTTAATTCGAGAATAGAAAACATCTGAATGCATGAAAGTTTATTTATTAAAACGGCAGTAAAGCTTCAAAAAAGACAAAAGATCATTACAATTATTTACTACAAGCTTTCATAGGAGTTCCAGTGATGAAAAGAATTACTTCTTGTTTCCAGTGATGTGAAGGATGCCAGATCCGTCCAACTTGCTCTTGATGGTCGATGGATCGGTTCCCTTTGGAAGTCTGTAGCATCTGGTGATACTGCGAGTGATGGTTCCGAACTTGTCGTCCTTGGCAGTGTGGGCCATATGGATCTCAAGGAACTCTCCAACGTTCTTCACATCGATCTCATTTGGCTCGAAGTTGAAGGCCTCGAGTCCGACTTCGAAGTGGTCTTCGTATTCGAGAAC</canonical>
            <polymorphic>CTGTATTTTTTAAAGGTTTTTTTTTGTTTACAAGCCACTTCCAATTTGACTCTTTAAACGGCGAAAATGTTTACAAAATACTTTAAAAAACCCAGAAATCGCAATGAAATGTCTGAAAATCCATGAAATTAATTGAAATTAAATTACGTTGAAATTACCCAGAATTTTCCCATAGATTCTTCTCTTTTTATTTCCCCTCAAAAATCCCTTCAATTTTTCATTTTCACAGCTCCCCACTCTTCGATCCCTTTTCCTCCGTCTCTTCTCCTCCGCTAAGCCCCGCCCACTCTACACACAAAACATAGCGGGCGGCGGAACCCGGGAAGAGTCGGTACATGGGCGCATACGTATAGCGCGCTCTGGTCACTCTAATCAACTCTGGTTCCTCTGCATTTGACCGTGAAAATCTTTCGCCTTTTACTAAAGATTTCCGTGCAAAGGAGCAAACTTTGAGTATTATTACCAATTTTTGGAGTCCCCTCGAAAGAGCGGGACAAAARTAAAGTCACAAAAGTACTCAGAAACATCTGAAATCGCTGCTTTGTGATGTGAAAATCTTGGGATCGCCGGCTGAAATAAGAACCTTGAAGACGTTTTCGGACTCAATCCTTGTGTTAATTCGAGAATAGAAAACATCTGAATGCATGAAAGTTTATTTATTAAAACGGCAGTAAAGCTTCAAAAAAGACAAAAGATCATTACAATTATTTACTACAAGCTTTCATAGGAGTTCCAGTGATGAAAAGAATTACTTCTTGTTTCCAGTGATGTGAAGGATGCCAGATCCGTCCAACTTGCTCTTGATGGTCGATGGATCGGTTCCCTTTGGAAGTCTGTAGCATCTGGTGATACTGCGAGTGATGGTTCCGAACTTGTCGTCCTTGGCAGTGTGGGCCATATGGATCTCAAGGAACTCTCCAACGTTCTTCACATCGATCTCATTTGGCTCGAAGTTGAAGGCCTCGAGTCCGACTTCGAAGTGGTCTTCGTATTCGAGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTCGCCTTTTACTAAAGATT</pcr_primer_p1>
		<pcr_primer_p2>ATAAACTTTCATGCATTCAGATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTTCGCCTTTTACTAAAGATTTCCGTGCAAAGGAGCAAACTTTGAGTATTATTACCAATTTTTGGAGTCCCCTCGAAAGAGCGGGACAAAAGTAAAGTCACAAAAGTACTCAGAAACATCTGAAATCGCTGCTTTGTGATGTGAAAATCTTGGGATCGCCGGCTGAAATAAGAACCTTGAAGACGTTTTCGGACTCAATCCTTGTGTTAATTCGAGAATAGAAAACATCTGAATGCATGAAAGTTTAT</canonical_amplicon>
		<polymorphic_amplicon>TCTTTCGCCTTTTACTAAAGATTTCCGTGCAAAGGAGCAAACTTTGAGTATTATTACCAATTTTTGGAGTCCCCTCGAAAGAGCGGGACAAAARTAAAGTCACAAAAGTACTCAGAAACATCTGAAATCGCTGCTTTGTGATGTGAAAATCTTGGGATCGCCGGCTGAAATAAGAACCTTGAAGACGTTTTCGGACTCAATCCTTGTGTTAATTCGAGAATAGAAAACATCTGAATGCATGAAAGTTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25809</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>86830</contig_pos>
        <strand>+</strand>
        <context>AAGTSACAAA[A/T]GTACTCAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCAATTTTTGGAGTCCCCTCGAAAGAGCGGGACAAAAGTAAAGTCACAAA</left_flank>
        <right_flank>GTACTCAGAAACATCTGAAATCGCTGCTTTGTGATGTGAAAATCTTGGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGTTTTTTTTTGTTTACAAGCCACTTCCAATTTGACTCTTTAAACGGCGAAAATGTTTACAAAATACTTTAAAAAACCCAGAAATCGCAATGAAATGTCTGAAAATCCATGAAATTAATTGAAATTAAATTACGTTGAAATTACCCAGAATTTTCCCATAGATTCTTCTCTTTTTATTTCCCCTCAAAAATCCCTTCAATTTTTCATTTTCACAGCTCCCCACTCTTCGATCCCTTTTCCTCCGTCTCTTCTCCTCCGCTAAGCCCCGCCCACTCTACACACAAAACATAGCGGGCGGCGGAACCCGGGAAGAGTCGGTACATGGGCGCATACGTATAGCGCGCTCTGGTCACTCTAATCAACTCTGGTTCCTCTGCATTTGACCGTGAAAATCTTTCGCCTTTTACTAAAGATTTCCGTGCAAAGGAGCAAACTTTGAGTATTATTACCAATTTTTGGAGTCCCCTCGAAAGAGCGGGACAAAAGTAAAGTCACAAAAGTACTCAGAAACATCTGAAATCGCTGCTTTGTGATGTGAAAATCTTGGGATCGCCGGCTGAAATAAGAACCTTGAAGACGTTTTCGGACTCAATCCTTGTGTTAATTCGAGAATAGAAAACATCTGAATGCATGAAAGTTTATTTATTAAAACGGCAGTAAAGCTTCAAAAAAGACAAAAGATCATTACAATTATTTACTACAAGCTTTCATAGGAGTTCCAGTGATGAAAAGAATTACTTCTTGTTTCCAGTGATGTGAAGGATGCCAGATCCGTCCAACTTGCTCTTGATGGTCGATGGATCGGTTCCCTTTGGAAGTCTGTAGCATCTGGTGATACTGCGAGTGATGGTTCCGAACTTGTCGTCCTTGGCAGTGTGGGCCATATGGATCTCAAGGAACTCTCCAACGTTCTTCACATCGATCTCATTTGGCTCGAAGTTGAAGGCCTCGAGTCCGACTTCGAAGTGGTCTTCGTATTCGAGAACCTGAAACTTATTG</canonical>
            <polymorphic>AGGTTTTTTTTTGTTTACAAGCCACTTCCAATTTGACTCTTTAAACGGCGAAAATGTTTACAAAATACTTTAAAAAACCCAGAAATCGCAATGAAATGTCTGAAAATCCATGAAATTAATTGAAATTAAATTACGTTGAAATTACCCAGAATTTTCCCATAGATTCTTCTCTTTTTATTTCCCCTCAAAAATCCCTTCAATTTTTCATTTTCACAGCTCCCCACTCTTCGATCCCTTTTCCTCCGTCTCTTCTCCTCCGCTAAGCCCCGCCCACTCTACACACAAAACATAGCGGGCGGCGGAACCCGGGAAGAGTCGGTACATGGGCGCATACGTATAGCGCGCTCTGGTCACTCTAATCAACTCTGGTTCCTCTGCATTTGACCGTGAAAATCTTTCGCCTTTTACTAAAGATTTCCGTGCAAAGGAGCAAACTTTGAGTATTATTACCAATTTTTGGAGTCCCCTCGAAAGAGCGGGACAAAAGTAAAGTCACAAAWGTACTCAGAAACATCTGAAATCGCTGCTTTGTGATGTGAAAATCTTGGGATCGCCGGCTGAAATAAGAACCTTGAAGACGTTTTCGGACTCAATCCTTGTGTTAATTCGAGAATAGAAAACATCTGAATGCATGAAAGTTTATTTATTAAAACGGCAGTAAAGCTTCAAAAAAGACAAAAGATCATTACAATTATTTACTACAAGCTTTCATAGGAGTTCCAGTGATGAAAAGAATTACTTCTTGTTTCCAGTGATGTGAAGGATGCCAGATCCGTCCAACTTGCTCTTGATGGTCGATGGATCGGTTCCCTTTGGAAGTCTGTAGCATCTGGTGATACTGCGAGTGATGGTTCCGAACTTGTCGTCCTTGGCAGTGTGGGCCATATGGATCTCAAGGAACTCTCCAACGTTCTTCACATCGATCTCATTTGGCTCGAAGTTGAAGGCCTCGAGTCCGACTTCGAAGTGGTCTTCGTATTCGAGAACCTGAAACTTATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGTACT</site>
                <isoschizomers>
                    <enzyme>Acc113I</enzyme>
                    <enzyme>ScaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTCGCCTTTTACTAAAGATT</pcr_primer_p1>
		<pcr_primer_p2>ATAAACTTTCATGCATTCAGATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTTCGCCTTTTACTAAAGATTTCCGTGCAAAGGAGCAAACTTTGAGTATTATTACCAATTTTTGGAGTCCCCTCGAAAGAGCGGGACAAAAGTAAAGTCACAAAAGTACTCAGAAACATCTGAAATCGCTGCTTTGTGATGTGAAAATCTTGGGATCGCCGGCTGAAATAAGAACCTTGAAGACGTTTTCGGACTCAATCCTTGTGTTAATTCGAGAATAGAAAACATCTGAATGCATGAAAGTTTAT</canonical_amplicon>
		<polymorphic_amplicon>TCTTTCGCCTTTTACTAAAGATTTCCGTGCAAAGGAGCAAACTTTGAGTATTATTACCAATTTTTGGAGTCCCCTCGAAAGAGCGGGACAAAAGTAAAGTCACAAAWGTACTCAGAAACATCTGAAATCGCTGCTTTGTGATGTGAAAATCTTGGGATCGCCGGCTGAAATAAGAACCTTGAAGACGTTTTCGGACTCAATCCTTGTGTTAATTCGAGAATAGAAAACATCTGAATGCATGAAAGTTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25810</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>88627</contig_pos>
        <strand></strand>
        <context>CTTTTCAATG[A/G]TTCCATAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACTGTAGTCATAGGGTGTCAATATTTGACACTGTTCGCACTTTTCAATG</left_flank>
        <right_flank>TTCCATAAAATTGTAAAATGAATGATTTTAGCAGATTTTAAAAGATAAAT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCGGGACGAGGATTTTCAGTGAGAANNNNNNNNNNNNCCGGATTTTTTTCAATTTCATGTCCGGCAGGTAAAAAAAACGTAAAAAACCACTGTCGGCGGCTTGAAAAAAGGCTGTCAGGTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGCCGTTTTTCGGGGATTTCGAATTTTCTTTGAATTTTTTCGCAATAATATTTGAAAAATAGATAAATTTTAACACATTTTAATGCAAAAAATTTTTGGTCGGAGTCCCTCTTTAAGCCCTAATTAGAAAATTTGTTTCTATAGAAATTCGTCTGTTTCATTTCGGCTAATTATAAAGAACGGTTGGCTTGTTTTGTCAATATTGCAATACTCTCCTAACTTATTCTCATCTTTCGTGTTAGTTTTTTTCACTGTACTGTAGTCATAGGGTGTCAATATTTGACACTGTTCGCACTTTTCAATGATTCCATAAAATTGTAAAATGAATGATTTTAGCAGATTTTAAAAGATAAATGCTACATCAGAATTAGAAGATCCTCACTTTTTGATTTTCCTACAGCGGTTTTTTGACTGAAAAATAATTTGCAACTTTACTTTAGTACAACTTTTGGCTGTTTCATCTGGGCTGAATGTAAAAAAAGGCTGAAGGCCACCTACTGAAGAAGGAGTTTTCCGTATTTATTTTCTCGATTTTTGTACGTTTTCAGTCAATTTTTTCGCCATCAAAATTTTACGTTATCCGACTTTTTTGCAATGATATCGTCTTTGTAGGAATTCTGGTGTCATTCTCTTAGTTAGGTGGAATTCAATCATAAATAGGAGGTAAGAATTCCAAAAATCCATCTGTCTTTTTTTTGTTGAAAATCTTGGATATGAAATTAGAATTAATTTGGCAGTAAATCACTTTTTTATCTGTTTCATCTGGGCTAATTATGAAAACGGTTCTGGTCACCGACTAATCAAA</canonical>
            <polymorphic>GCCGGGACGAGGATTTTCAGTGAGAANNNNNNNNNNNNCCGGATTTTTTTCAATTTCATGTCCGGCAGGTAAAAAAAACGTAAAAAACCACTGTCGGCGGCTTGAAAAAAGGCTGTCAGGTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGCCGTTTTTCGGGGATTTCGAATTTTCTTTGAATTTTTTCGCAATAATATTTGAAAAATAGATAAATTTTAACACATTTTAATGCAAAAAATTTTTGGTCGGAGTCCCTCTTTAAGCCCTAATTAGAAAATTTGTTTCTATAGAAATTCGTCTGTTTCATTTCGGCTAATTATAAAGAACGGTTGGCTTGTTTTGTCAATATTGCAATACTCTCCTAACTTATTCTCATCTTTCGTGTTAGTTTTTTTCACTGTACTGTAGTCATAGGGTGTCAATATTTGACACTGTTCGCACTTTTCAATGRTTCCATAAAATTGTAAAATGAATGATTTTAGCAGATTTTAAAAGATAAATGCTACATCAGAATTAGAAGATCCTCACTTTTTGATTTTCCTACAGCGGTTTTTTGACTGAAAAATAATTTGCAACTTTACTTTAGTACAACTTTTGGCTGTTTCATCTGGGCTGAATGTAAAAAAAGGCTGAAGGCCACCTACTGAAGAAGGAGTTTTCCGTATTTATTTTCTCGATTTTTGTACGTTTTCAGTCAATTTTTTCGCCATCAAAATTTTACGTTATCCGACTTTTTTGCAATGATATCGTCTTTGTAGGAATTCTGGTGTCATTCTCTTAGTTAGGTGGAATTCAATCATAAATAGGAGGTAAGAATTCCAAAAATCCATCTGTCTTTTTTTTGTTGAAAATCTTGGATATGAAATTAGAATTAATTTGGCAGTAAATCACTTTTTTATCTGTTTCATCTGGGCTAATTATGAAAACGGTTCTGGTCACCGACTAATCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>501 298 201</canonical_bands>
                <polymorphic_bands>702 298</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCATTTCGGCTAATTATAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTGTAGGAAAATCAAAAAGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTCATTTCGGCTAATTATAAAGAACGGTTGGCTTGTTTTGTCAATATTGCAATACTCTCCTAACTTATTCTCATCTTTCGTGTTAGTTTTTTTCACTGTACTGTAGTCATAGGGTGTCAATATTTGACACTGTTCGCACTTTTCAATGATTCCATAAAATTGTAAAATGAATGATTTTAGCAGATTTTAAAAGATAAATGCTACATCAGAATTAGAAGATCCTCACTTTTTGATTTTCCTACAG</canonical_amplicon>
		<polymorphic_amplicon>TTTCATTTCGGCTAATTATAAAGAACGGTTGGCTTGTTTTGTCAATATTGCAATACTCTCCTAACTTATTCTCATCTTTCGTGTTAGTTTTTTTCACTGTACTGTAGTCATAGGGTGTCAATATTTGACACTGTTCGCACTTTTCAATGRTTCCATAAAATTGTAAAATGAATGATTTTAGCAGATTTTAAAAGATAAATGCTACATCAGAATTAGAAGATCCTCACTTTTTGATTTTCCTACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25811</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>89049</contig_pos>
        <strand>+</strand>
        <context>AAATTAGAAW[A/T]AATTTGGCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATCCATCTGTCTTTTTTTTGTTGAAAATCTTGGATATGAAATTAGAAT</left_flank>
        <right_flank>AATTTGGCAGTAAATCACTTTTTTATCTGTTTCATCTGGGCTAATTATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCTTTCGTGTTAGTTTTTTTCACTGTACTGTAGTCATAGGGTGTCAATATTTGACACTGTTCGCACTTTTCAATGATTCCATAAAATTGTAAAATGAATGATTTTAGCAGATTTTAAAAGATAAATGCTACATCAGAATTAGAAGATCCTCACTTTTTGATTTTCCTACAGCGGTTTTTTGACTGAAAAATAATTTGCAACTTTACTTTAGTACAACTTTTGGCTGTTTCATCTGGGCTGAATGTAAAAAAAGGCTGAAGGCCACCTACTGAAGAAGGAGTTTTCCGTATTTATTTTCTCGATTTTTGTACGTTTTCAGTCAATTTTTTCGCCATCAAAATTTTACGTTATCCGACTTTTTTGCAATGATATCGTCTTTGTAGGAATTCTGGTGTCATTCTCTTAGTTAGGTGGAATTCAATCATAAATAGGAGGTAAGAATTCCAAAAATCCATCTGTCTTTTTTTTGTTGAAAATCTTGGATATGAAATTAGAATTAATTTGGCAGTAAATCACTTTTTTATCTGTTTCATCTGGGCTAATTATGAAAACGGTTCTGGTCACCGACTAATCAAACCTTCTTTTCATGGAATTTCAAATACATGGCATTTTAAAATTATTTTTTGAATGTGCAGTATCAGTTATGTGGTTGATGTAACAGAAAAACTTTTGAAACTCGGAAACGATTATATCGTAATTTGATGATTTCATGAGTTCTGGTTTCACTCTCCTCATAGAAATTTAGCTGGAAAAAATACGTATGCATTTCAAAAGACAATATTCTTATTTTCAATATACAGTACTGGTCAATAAGATTTACAAAAAAAAACAGTTTTTTCAGTTGATTTTCGTTCATTTTGACCATTTTCGCGAGTCTGGAGTTCGCCTGTCAAGTTCCCGATCTCTTTGAAAAACTTTGAGGGTGTAAGACAGATCTAGAAACCTTCGTATTCACAGAATTTTTAGAAAATTCCAGTTTTTGAGCTATTAGCCAATTC</canonical>
            <polymorphic>CATCTTTCGTGTTAGTTTTTTTCACTGTACTGTAGTCATAGGGTGTCAATATTTGACACTGTTCGCACTTTTCAATGATTCCATAAAATTGTAAAATGAATGATTTTAGCAGATTTTAAAAGATAAATGCTACATCAGAATTAGAAGATCCTCACTTTTTGATTTTCCTACAGCGGTTTTTTGACTGAAAAATAATTTGCAACTTTACTTTAGTACAACTTTTGGCTGTTTCATCTGGGCTGAATGTAAAAAAAGGCTGAAGGCCACCTACTGAAGAAGGAGTTTTCCGTATTTATTTTCTCGATTTTTGTACGTTTTCAGTCAATTTTTTCGCCATCAAAATTTTACGTTATCCGACTTTTTTGCAATGATATCGTCTTTGTAGGAATTCTGGTGTCATTCTCTTAGTTAGGTGGAATTCAATCATAAATAGGAGGTAAGAATTCCAAAAATCCATCTGTCTTTTTTTTGTTGAAAATCTTGGATATGAAATTAGAATWAATTTGGCAGTAAATCACTTTTTTATCTGTTTCATCTGGGCTAATTATGAAAACGGTTCTGGTCACCGACTAATCAAACCTTCTTTTCATGGAATTTCAAATACATGGCATTTTAAAATTATTTTTTGAATGTGCAGTATCAGTTATGTGGTTGATGTAACAGAAAAACTTTTGAAACTCGGAAACGATTATATCGTAATTTGATGATTTCATGAGTTCTGGTTTCACTCTCCTCATAGAAATTTAGCTGGAAAAAATACGTATGCATTTCAAAAGACAATATTCTTATTTTCAATATACAGTACTGGTCAATAAGATTTACAAAAAAAAACAGTTTTTTCAGTTGATTTTCGTTCATTTTGACCATTTTCGCGAGTCTGGAGTTCGCCTGTCAAGTTCCCGATCTCTTTGAAAAACTTTGAGGGTGTAAGACAGATCTAGAAACCTTCGTATTCACAGAATTTTTAGAAAATTCCAGTTTTTGAGCTATTAGCCAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>387 383 116 114</canonical_bands>
                <polymorphic_bands>497 387 116</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>219 130 86 81 55 52 50 49 46 43 42 30 25 25 24 17 11 6 5 4</canonical_bands>
                <polymorphic_bands>219 130 86 81 55 52 50 49 46 43 42 30 25 25 24 17 11 10 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGAATTCAATCATAAATAGGAG</pcr_primer_p1>
		<pcr_primer_p2>CTGTTACATCAACCACATAACTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGAATTCAATCATAAATAGGAGGTAAGAATTCCAAAAATCCATCTGTCTTTTTTTTGTTGAAAATCTTGGATATGAAATTAGAATTAATTTGGCAGTAAATCACTTTTTTATCTGTTTCATCTGGGCTAATTATGAAAACGGTTCTGGTCACCGACTAATCAAACCTTCTTTTCATGGAATTTCAAATACATGGCATTTTAAAATTATTTTTTGAATGTGCAGTATCAGTTATGTGGTTGATGTAACAG</canonical_amplicon>
		<polymorphic_amplicon>TGGAATTCAATCATAAATAGGAGGTAAGAATTCCAAAAATCCATCTGTCTTTTTTTTGTTGAAAATCTTGGATATGAAATTAGAATWAATTTGGCAGTAAATCACTTTTTTATCTGTTTCATCTGGGCTAATTATGAAAACGGTTCTGGTCACCGACTAATCAAACCTTCTTTTCATGGAATTTCAAATACATGGCATTTTAAAATTATTTTTTGAATGTGCAGTATCAGTTATGTGGTTGATGTAACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25812</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>94075</contig_pos>
        <strand></strand>
        <context>TCTCCCACAG[T/A]ACAWTTYCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTATCTGTAAAACCTCAAAAAGTTGCTTCCAAGGGCACGCTCTCCCACAG</left_flank>
        <right_flank>ACAATTTCGAGCTGCAAATTAATTGTTGACCTACAGAAAAAAGTTTGGCG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATTTCTTTATACTTTTCAATAAATCATTTTGTAATGCAATCTGAATGTGTCTGATCTCTGAAAAAACCATGTGTACGCTTCAGAAACCAGATAAACAGAGCTTTGCTGAAAATCTGAAAACCTAAAAATAAATGTTCGTTGTTAAAAAAAATAAATCCCATCATTTGTCAGTTTTCCTTGCGTTTTTAAAAAAATGCGTTCAGCTCCGGAAATCAAATTGTTTAAGACACAAAAAATTCTTGATTTGCATTTTTTTTTGAAAAAATCTAGAAGACAAATTGGCTTGTGAGTTCACCAATATTATTTATTTTTTCTGTCTGGCAATTTTTTCCGTTTCATAAATTTCATGTTTCATGATATTCTAATAAAACAATAATTATGATTTCAGATAGTACACAATTTTCATTGCAGTAAAAGCCTCACATAGAGAAAAAGAACTCGAGACAATTATCTGTAAAACCTCAAAAAGTTGCTTCCAAGGGCACGCTCTCCCACAGTACAATTTCGAGCTGCAAATTAATTGTTGACCTACAGAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCGGATTTTGTGGAGTTCCAAGATGGTTCAAATAATTCTTAAAAAATTGTATGGTCGTTTTCCGGAAGAAAAAATTTCAAAAATGGTCATTTTTGAAAGTTTTTTACAGAAAAAATCTATCTCCTCTTTCAGTTTTTAACATTTTTAGGAGTTCTTTAGCTCAAAAAACCGCAATTATTTTCTCTACATTTTCTATGTATGAATTTTTAATTTGTCTGATAAAACTTTTTTTTATAATTCAAAAACCTCATGAAAATGCACGAAATAGCATTTTTGTGTTGTTTTGTAATTATAAAAGAAGTTTTATAAGACGAATCAAAAATTCATCCATAGAAAATGTAGAGAAAATAATTGCGGTTTTTTGAGCTAAAGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGA</canonical>
            <polymorphic>TCATTTCTTTATACTTTTCAATAAATCATTTTGTAATGCAATCTGAATGTGTCTGATCTCTGAAAAAACCATGTGTACGCTTCAGAAACCAGATAAACAGAGCTTTGCTGAAAATCTGAAAACCTAAAAATAAATGTTCGTTGTTAAAAAAAATAAATCCCATCATTTGTCAGTTTTCCTTGCGTTTTTAAAAAAATGCGTTCAGCTCCGGAAATCAAATTGTTTAAGACACAAAAAATTCTTGATTTGCATTTTTTTTTGAAAAAATCTAGAAGACAAATTGGCTTGTGAGTTCACCAATATTATTTATTTTTTCTGTCTGGCAATTTTTTCCGTTTCATAAATTTCATGTTTCATGATATTCTAATAAAACAATAATTATGATTTCAGATAGTACACAATTTTCATTGCAGTAAAAGCCTCACATAGAGAAAAAGAACTCGAGACAATTATCTGTAAAACCTCAAAAAGTTGCTTCCAAGGGCACGCTCTCCCACAGWACAATTTCGAGCTGCAAATTAATTGTTGACCTACAGAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCGGATTTTGTGGAGTTCCAAGATGGTTCAAATAATTCTTAAAAAATTGTATGGTCGTTTTCCGGAAGAAAAAATTTCAAAAATGGTCATTTTTGAAAGTTTTTTACAGAAAAAATCTATCTCCTCTTTCAGTTTTTAACATTTTTAGGAGTTCTTTAGCTCAAAAAACCGCAATTATTTTCTCTACATTTTCTATGTATGAATTTTTAATTTGTCTGATAAAACTTTTTTTTATAATTCAAAAACCTCATGAAAATGCACGAAATAGCATTTTTGTGTTGTTTTGTAATTATAAAAGAAGTTTTATAAGACGAATCAAAAATTCATCCATAGAAAATGTAGAGAAAATAATTGCGGTTTTTTGAGCTAAAGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 319 105 76</canonical_bands>
                <polymorphic_bands>605 319 76</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>502 393 105</canonical_bands>
                <polymorphic_bands>607 393</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGTTTCATAAATTTCATGTTT</pcr_primer_p1>
		<pcr_primer_p2>CTGAAATTATGGTTTTAGACCTG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CCGTTTCATAAATTTCATGTTTCATGATATTCTAATAAAACAATAATTATGATTTCAGATAGTACACAATTTTCATTGCAGTAAAAGCCTCACATAGAGAAAAAGAACTCGAGACAATTATCTGTAAAACCTCAAAAAGTTGCTTCCAAGGGCACGCTCTCCCACAGTACAATTTCGAGCTGCAAATTAATTGTTGACCTACAGAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAG</canonical_amplicon>
		<polymorphic_amplicon>CCGTTTCATAAATTTCATGTTTCATGATATTCTAATAAAACAATAATTATGATTTCAGATAGTACACAATTTTCATTGCAGTAAAAGCCTCACATAGAGAAAAAGAACTCGAGACAATTATCTGTAAAACCTCAAAAAGTTGCTTCCAAGGGCACGCTCTCCCACAGWACAATTTCGAGCTGCAAATTAATTGTTGACCTACAGAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25813</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>94079</contig_pos>
        <strand></strand>
        <context>CCACAGWACA[A/T]TTYCGAGCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGTAAAACCTCAAAAAGTTGCTTCCAAGGGCACGCTCTCCCACAGTACA</left_flank>
        <right_flank>TTTCGAGCTGCAAATTAATTGTTGACCTACAGAAAAAAGTTTGGCGCGAT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTTATACTTTTCAATAAATCATTTTGTAATGCAATCTGAATGTGTCTGATCTCTGAAAAAACCATGTGTACGCTTCAGAAACCAGATAAACAGAGCTTTGCTGAAAATCTGAAAACCTAAAAATAAATGTTCGTTGTTAAAAAAAATAAATCCCATCATTTGTCAGTTTTCCTTGCGTTTTTAAAAAAATGCGTTCAGCTCCGGAAATCAAATTGTTTAAGACACAAAAAATTCTTGATTTGCATTTTTTTTTGAAAAAATCTAGAAGACAAATTGGCTTGTGAGTTCACCAATATTATTTATTTTTTCTGTCTGGCAATTTTTTCCGTTTCATAAATTTCATGTTTCATGATATTCTAATAAAACAATAATTATGATTTCAGATAGTACACAATTTTCATTGCAGTAAAAGCCTCACATAGAGAAAAAGAACTCGAGACAATTATCTGTAAAACCTCAAAAAGTTGCTTCCAAGGGCACGCTCTCCCACAGTACAATTTCGAGCTGCAAATTAATTGTTGACCTACAGAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCGGATTTTGTGGAGTTCCAAGATGGTTCAAATAATTCTTAAAAAATTGTATGGTCGTTTTCCGGAAGAAAAAATTTCAAAAATGGTCATTTTTGAAAGTTTTTTACAGAAAAAATCTATCTCCTCTTTCAGTTTTTAACATTTTTAGGAGTTCTTTAGCTCAAAAAACCGCAATTATTTTCTCTACATTTTCTATGTATGAATTTTTAATTTGTCTGATAAAACTTTTTTTTATAATTCAAAAACCTCATGAAAATGCACGAAATAGCATTTTTGTGTTGTTTTGTAATTATAAAAGAAGTTTTATAAGACGAATCAAAAATTCATCCATAGAAAATGTAGAGAAAATAATTGCGGTTTTTTGAGCTAAAGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGA</canonical>
            <polymorphic>TTCTTTATACTTTTCAATAAATCATTTTGTAATGCAATCTGAATGTGTCTGATCTCTGAAAAAACCATGTGTACGCTTCAGAAACCAGATAAACAGAGCTTTGCTGAAAATCTGAAAACCTAAAAATAAATGTTCGTTGTTAAAAAAAATAAATCCCATCATTTGTCAGTTTTCCTTGCGTTTTTAAAAAAATGCGTTCAGCTCCGGAAATCAAATTGTTTAAGACACAAAAAATTCTTGATTTGCATTTTTTTTTGAAAAAATCTAGAAGACAAATTGGCTTGTGAGTTCACCAATATTATTTATTTTTTCTGTCTGGCAATTTTTTCCGTTTCATAAATTTCATGTTTCATGATATTCTAATAAAACAATAATTATGATTTCAGATAGTACACAATTTTCATTGCAGTAAAAGCCTCACATAGAGAAAAAGAACTCGAGACAATTATCTGTAAAACCTCAAAAAGTTGCTTCCAAGGGCACGCTCTCCCACAGTACAWTTTCGAGCTGCAAATTAATTGTTGACCTACAGAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCGGATTTTGTGGAGTTCCAAGATGGTTCAAATAATTCTTAAAAAATTGTATGGTCGTTTTCCGGAAGAAAAAATTTCAAAAATGGTCATTTTTGAAAGTTTTTTACAGAAAAAATCTATCTCCTCTTTCAGTTTTTAACATTTTTAGGAGTTCTTTAGCTCAAAAAACCGCAATTATTTTCTCTACATTTTCTATGTATGAATTTTTAATTTGTCTGATAAAACTTTTTTTTATAATTCAAAAACCTCATGAAAATGCACGAAATAGCATTTTTGTGTTGTTTTGTAATTATAAAAGAAGTTTTATAAGACGAATCAAAAATTCATCCATAGAAAATGTAGAGAAAATAATTGCGGTTTTTTGAGCTAAAGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>213 100 61 55 52 48 46 42 42 37 34 33 29 29 28 27 23 20 19 18 14 11 8 7 4</canonical_bands>
                <polymorphic_bands>213 100 69 61 52 48 46 42 42 37 34 33 29 29 28 27 23 20 19 18 11 8 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGTTTCATAAATTTCATGTTT</pcr_primer_p1>
		<pcr_primer_p2>CTGAAATTATGGTTTTAGACCTG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CCGTTTCATAAATTTCATGTTTCATGATATTCTAATAAAACAATAATTATGATTTCAGATAGTACACAATTTTCATTGCAGTAAAAGCCTCACATAGAGAAAAAGAACTCGAGACAATTATCTGTAAAACCTCAAAAAGTTGCTTCCAAGGGCACGCTCTCCCACAGTACAATTTCGAGCTGCAAATTAATTGTTGACCTACAGAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAG</canonical_amplicon>
		<polymorphic_amplicon>CCGTTTCATAAATTTCATGTTTCATGATATTCTAATAAAACAATAATTATGATTTCAGATAGTACACAATTTTCATTGCAGTAAAAGCCTCACATAGAGAAAAAGAACTCGAGACAATTATCTGTAAAACCTCAAAAAGTTGCTTCCAAGGGCACGCTCTCCCACAGTACAWTTTCGAGCTGCAAATTAATTGTTGACCTACAGAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25814</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>94082</contig_pos>
        <strand></strand>
        <context>CAGWACAWTT[T/C]CGAGCTGCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAAAACCTCAAAAAGTTGCTTCCAAGGGCACGCTCTCCCACAGTACAATT</left_flank>
        <right_flank>CGAGCTGCAAATTAATTGTTGACCTACAGAAAAAAGTTTGGCGCGATCAC</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTATACTTTTCAATAAATCATTTTGTAATGCAATCTGAATGTGTCTGATCTCTGAAAAAACCATGTGTACGCTTCAGAAACCAGATAAACAGAGCTTTGCTGAAAATCTGAAAACCTAAAAATAAATGTTCGTTGTTAAAAAAAATAAATCCCATCATTTGTCAGTTTTCCTTGCGTTTTTAAAAAAATGCGTTCAGCTCCGGAAATCAAATTGTTTAAGACACAAAAAATTCTTGATTTGCATTTTTTTTTGAAAAAATCTAGAAGACAAATTGGCTTGTGAGTTCACCAATATTATTTATTTTTTCTGTCTGGCAATTTTTTCCGTTTCATAAATTTCATGTTTCATGATATTCTAATAAAACAATAATTATGATTTCAGATAGTACACAATTTTCATTGCAGTAAAAGCCTCACATAGAGAAAAAGAACTCGAGACAATTATCTGTAAAACCTCAAAAAGTTGCTTCCAAGGGCACGCTCTCCCACAGTACAATTTCGAGCTGCAAATTAATTGTTGACCTACAGAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCGGATTTTGTGGAGTTCCAAGATGGTTCAAATAATTCTTAAAAAATTGTATGGTCGTTTTCCGGAAGAAAAAATTTCAAAAATGGTCATTTTTGAAAGTTTTTTACAGAAAAAATCTATCTCCTCTTTCAGTTTTTAACATTTTTAGGAGTTCTTTAGCTCAAAAAACCGCAATTATTTTCTCTACATTTTCTATGTATGAATTTTTAATTTGTCTGATAAAACTTTTTTTTATAATTCAAAAACCTCATGAAAATGCACGAAATAGCATTTTTGTGTTGTTTTGTAATTATAAAAGAAGTTTTATAAGACGAATCAAAAATTCATCCATAGAAAATGTAGAGAAAATAATTGCGGTTTTTTGAGCTAAAGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTT</canonical>
            <polymorphic>TTTATACTTTTCAATAAATCATTTTGTAATGCAATCTGAATGTGTCTGATCTCTGAAAAAACCATGTGTACGCTTCAGAAACCAGATAAACAGAGCTTTGCTGAAAATCTGAAAACCTAAAAATAAATGTTCGTTGTTAAAAAAAATAAATCCCATCATTTGTCAGTTTTCCTTGCGTTTTTAAAAAAATGCGTTCAGCTCCGGAAATCAAATTGTTTAAGACACAAAAAATTCTTGATTTGCATTTTTTTTTGAAAAAATCTAGAAGACAAATTGGCTTGTGAGTTCACCAATATTATTTATTTTTTCTGTCTGGCAATTTTTTCCGTTTCATAAATTTCATGTTTCATGATATTCTAATAAAACAATAATTATGATTTCAGATAGTACACAATTTTCATTGCAGTAAAAGCCTCACATAGAGAAAAAGAACTCGAGACAATTATCTGTAAAACCTCAAAAAGTTGCTTCCAAGGGCACGCTCTCCCACAGTACAATTYCGAGCTGCAAATTAATTGTTGACCTACAGAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCGGATTTTGTGGAGTTCCAAGATGGTTCAAATAATTCTTAAAAAATTGTATGGTCGTTTTCCGGAAGAAAAAATTTCAAAAATGGTCATTTTTGAAAGTTTTTTACAGAAAAAATCTATCTCCTCTTTCAGTTTTTAACATTTTTAGGAGTTCTTTAGCTCAAAAAACCGCAATTATTTTCTCTACATTTTCTATGTATGAATTTTTAATTTGTCTGATAAAACTTTTTTTTATAATTCAAAAACCTCATGAAAATGCACGAAATAGCATTTTTGTGTTGTTTTGTAATTATAAAAGAAGTTTTATAAGACGAATCAAAAATTCATCCATAGAAAATGTAGAGAAAATAATTGCGGTTTTTTGAGCTAAAGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 435 66</canonical_bands>
                <polymorphic_bands>565 435</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGTTTCATAAATTTCATGTTT</pcr_primer_p1>
		<pcr_primer_p2>CTGAAATTATGGTTTTAGACCTG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CCGTTTCATAAATTTCATGTTTCATGATATTCTAATAAAACAATAATTATGATTTCAGATAGTACACAATTTTCATTGCAGTAAAAGCCTCACATAGAGAAAAAGAACTCGAGACAATTATCTGTAAAACCTCAAAAAGTTGCTTCCAAGGGCACGCTCTCCCACAGTACAATTTCGAGCTGCAAATTAATTGTTGACCTACAGAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAG</canonical_amplicon>
		<polymorphic_amplicon>CCGTTTCATAAATTTCATGTTTCATGATATTCTAATAAAACAATAATTATGATTTCAGATAGTACACAATTTTCATTGCAGTAAAAGCCTCACATAGAGAAAAAGAACTCGAGACAATTATCTGTAAAACCTCAAAAAGTTGCTTCCAAGGGCACGCTCTCCCACAGTACAATTYCGAGCTGCAAATTAATTGTTGACCTACAGAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25816</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>148835</contig_pos>
        <strand>+</strand>
        <context>AATTGTTCCA[A/G]TGACCTGCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAAAACATTCAATGTTCCCAAAAAACTACCTTCATCTCAAATTGTTCCA</left_flank>
        <right_flank>TGACCTGCTTTGAGTACGCGCTCGAAATCCTTCCGCTTTTAAAATTGATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAACCGGCAATGCACCTTTAAACGAATTTTCTGACGCAAAGTTCATCGCAGTGTGACAATCATAGTATTAAAGCTGTTAATCGTTGAGGTTTAAAACCAACTCGGATAATTAGGAAGTGAAACAGTTTTTAATGCTTTAAAATGTTTTTAGGCAGAAAACACAGTAGGAAAAATTAGTCGAAATTGCAGACAAAAGAACGCATGTTCATCCCTTTCTTTGTTCTTTACCTCTATTTTCCCTCGATCAATGTCATCGGCACTCCTCATCATTTGATTCAATTCTGGATTGATCTTTTTGGAATCATCATCTTTTCCTATAAATTTCTTATAAATGTTGTGTCTCTCCTATCTCTTACCATTAGCCTCTCCATTCAATCTTGTTAATGATTGCTCATCCTTTACTGTCACATCGATGGCAAATGCGATTTTATGCTACAAAAATACTCTTCAAAAACATTCAATGTTCCCAAAAAACTACCTTCATCTCAAATTGTTCCAGTGACCTGCTTTGAGTACGCGCTCGAAATCCTTCCGCTTTTAAAATTGATGACACTGTGGGCACGATATCTGACAAAAATTCAATTAGTTAATTTTCCGGTTTTGTTTTTGTGGATTCTTCCGTCCAATTTCCGATAGTGTCGATAACGGAAATTGGATATTATTTTTGGCTTTTATATAGACTCTGTTGCCTCACCAATGATGAAACGTTGTGACATTAATACTGCGATACGACTGGAAATCATTTCAAGGATCCAATCGATGTTTAGAATTCCATCGTCGTTCTGAAAACATGGGAAATCTAAGAAATCAAAACATTCAAACATATCGGTCTTATAAGAGTATTAGGAAACAGGAAAATTGTGCTAGTTATAAAACAGCCAAAAACTGAATTTCTAATTCTTTAGGTAAAATTATAGGAAATTGGCTACTTTTAATAAAACCTGTTTCACAATGCTAACAAGACAGTTTCAACTCATAAAATGTGATACGAAAAGTTAT</canonical>
            <polymorphic>TGAACCGGCAATGCACCTTTAAACGAATTTTCTGACGCAAAGTTCATCGCAGTGTGACAATCATAGTATTAAAGCTGTTAATCGTTGAGGTTTAAAACCAACTCGGATAATTAGGAAGTGAAACAGTTTTTAATGCTTTAAAATGTTTTTAGGCAGAAAACACAGTAGGAAAAATTAGTCGAAATTGCAGACAAAAGAACGCATGTTCATCCCTTTCTTTGTTCTTTACCTCTATTTTCCCTCGATCAATGTCATCGGCACTCCTCATCATTTGATTCAATTCTGGATTGATCTTTTTGGAATCATCATCTTTTCCTATAAATTTCTTATAAATGTTGTGTCTCTCCTATCTCTTACCATTAGCCTCTCCATTCAATCTTGTTAATGATTGCTCATCCTTTACTGTCACATCGATGGCAAATGCGATTTTATGCTACAAAAATACTCTTCAAAAACATTCAATGTTCCCAAAAAACTACCTTCATCTCAAATTGTTCCARTGACCTGCTTTGAGTACGCGCTCGAAATCCTTCCGCTTTTAAAATTGATGACACTGTGGGCACGATATCTGACAAAAATTCAATTAGTTAATTTTCCGGTTTTGTTTTTGTGGATTCTTCCGTCCAATTTCCGATAGTGTCGATAACGGAAATTGGATATTATTTTTGGCTTTTATATAGACTCTGTTGCCTCACCAATGATGAAACGTTGTGACATTAATACTGCGATACGACTGGAAATCATTTCAAGGATCCAATCGATGTTTAGAATTCCATCGTCGTTCTGAAAACATGGGAAATCTAAGAAATCAAAACATTCAAACATATCGGTCTTATAAGAGTATTAGGAAACAGGAAAATTGTGCTAGTTATAAAACAGCCAAAAACTGAATTTCTAATTCTTTAGGTAAAATTATAGGAAATTGGCTACTTTTAATAAAACCTGTTTCACAATGCTAACAAGACAGTTTCAACTCATAAAATGTGATACGAAAAGTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>151 98 94 86 80 68 64 55 51 50 42 39 36 27 19 15 14 5 4 2</canonical_bands>
                <polymorphic_bands>151 145 98 86 80 68 64 55 50 42 39 36 27 19 15 14 5 4 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>351 290 211 95 53</canonical_bands>
                <polymorphic_bands>351 306 290 53</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>351 290 211 95 53</canonical_bands>
                <polymorphic_bands>351 306 290 53</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCTTGTTAATGATTGCTCATC</pcr_primer_p1>
		<pcr_primer_p2>GAAGAATCCACAAAAACAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATCTTGTTAATGATTGCTCATCCTTTACTGTCACATCGATGGCAAATGCGATTTTATGCTACAAAAATACTCTTCAAAAACATTCAATGTTCCCAAAAAACTACCTTCATCTCAAATTGTTCCAGTGACCTGCTTTGAGTACGCGCTCGAAATCCTTCCGCTTTTAAAATTGATGACACTGTGGGCACGATATCTGACAAAAATTCAATTAGTTAATTTTCCGGTTTTGTTTTTGTGGATTCTTC</canonical_amplicon>
		<polymorphic_amplicon>AATCTTGTTAATGATTGCTCATCCTTTACTGTCACATCGATGGCAAATGCGATTTTATGCTACAAAAATACTCTTCAAAAACATTCAATGTTCCCAAAAAACTACCTTCATCTCAAATTGTTCCARTGACCTGCTTTGAGTACGCGCTCGAAATCCTTCCGCTTTTAAAATTGATGACACTGTGGGCACGATATCTGACAAAAATTCAATTAGTTAATTTTCCGGTTTTGTTTTTGTGGATTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25817</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>148849</contig_pos>
        <strand>+</strand>
        <context>CCTGCTTTGA[C/G]TACGCGCTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTTCCCAAAAAACTACCTTCATCTCAAATTGTTCCAGTGACCTGCTTTGA</left_flank>
        <right_flank>TACGCGCTCGAAATCCTTCCGCTTTTAAAATTGATGACACTGTGGGCACG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTTTAAACGAATTTTCTGACGCAAAGTTCATCGCAGTGTGACAATCATAGTATTAAAGCTGTTAATCGTTGAGGTTTAAAACCAACTCGGATAATTAGGAAGTGAAACAGTTTTTAATGCTTTAAAATGTTTTTAGGCAGAAAACACAGTAGGAAAAATTAGTCGAAATTGCAGACAAAAGAACGCATGTTCATCCCTTTCTTTGTTCTTTACCTCTATTTTCCCTCGATCAATGTCATCGGCACTCCTCATCATTTGATTCAATTCTGGATTGATCTTTTTGGAATCATCATCTTTTCCTATAAATTTCTTATAAATGTTGTGTCTCTCCTATCTCTTACCATTAGCCTCTCCATTCAATCTTGTTAATGATTGCTCATCCTTTACTGTCACATCGATGGCAAATGCGATTTTATGCTACAAAAATACTCTTCAAAAACATTCAATGTTCCCAAAAAACTACCTTCATCTCAAATTGTTCCAGTGACCTGCTTTGAGTACGCGCTCGAAATCCTTCCGCTTTTAAAATTGATGACACTGTGGGCACGATATCTGACAAAAATTCAATTAGTTAATTTTCCGGTTTTGTTTTTGTGGATTCTTCCGTCCAATTTCCGATAGTGTCGATAACGGAAATTGGATATTATTTTTGGCTTTTATATAGACTCTGTTGCCTCACCAATGATGAAACGTTGTGACATTAATACTGCGATACGACTGGAAATCATTTCAAGGATCCAATCGATGTTTAGAATTCCATCGTCGTTCTGAAAACATGGGAAATCTAAGAAATCAAAACATTCAAACATATCGGTCTTATAAGAGTATTAGGAAACAGGAAAATTGTGCTAGTTATAAAACAGCCAAAAACTGAATTTCTAATTCTTTAGGTAAAATTATAGGAAATTGGCTACTTTTAATAAAACCTGTTTCACAATGCTAACAAGACAGTTTCAACTCATAAAATGTGATACGAAAAGTTATTTTTTTCACAATTT</canonical>
            <polymorphic>ACCTTTAAACGAATTTTCTGACGCAAAGTTCATCGCAGTGTGACAATCATAGTATTAAAGCTGTTAATCGTTGAGGTTTAAAACCAACTCGGATAATTAGGAAGTGAAACAGTTTTTAATGCTTTAAAATGTTTTTAGGCAGAAAACACAGTAGGAAAAATTAGTCGAAATTGCAGACAAAAGAACGCATGTTCATCCCTTTCTTTGTTCTTTACCTCTATTTTCCCTCGATCAATGTCATCGGCACTCCTCATCATTTGATTCAATTCTGGATTGATCTTTTTGGAATCATCATCTTTTCCTATAAATTTCTTATAAATGTTGTGTCTCTCCTATCTCTTACCATTAGCCTCTCCATTCAATCTTGTTAATGATTGCTCATCCTTTACTGTCACATCGATGGCAAATGCGATTTTATGCTACAAAAATACTCTTCAAAAACATTCAATGTTCCCAAAAAACTACCTTCATCTCAAATTGTTCCAGTGACCTGCTTTGASTACGCGCTCGAAATCCTTCCGCTTTTAAAATTGATGACACTGTGGGCACGATATCTGACAAAAATTCAATTAGTTAATTTTCCGGTTTTGTTTTTGTGGATTCTTCCGTCCAATTTCCGATAGTGTCGATAACGGAAATTGGATATTATTTTTGGCTTTTATATAGACTCTGTTGCCTCACCAATGATGAAACGTTGTGACATTAATACTGCGATACGACTGGAAATCATTTCAAGGATCCAATCGATGTTTAGAATTCCATCGTCGTTCTGAAAACATGGGAAATCTAAGAAATCAAAACATTCAAACATATCGGTCTTATAAGAGTATTAGGAAACAGGAAAATTGTGCTAGTTATAAAACAGCCAAAAACTGAATTTCTAATTCTTTAGGTAAAATTATAGGAAATTGGCTACTTTTAATAAAACCTGTTTCACAATGCTAACAAGACAGTTTCAACTCATAAAATGTGATACGAAAAGTTATTTTTTTCACAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCTTGTTAATGATTGCTCATC</pcr_primer_p1>
		<pcr_primer_p2>GAAGAATCCACAAAAACAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATCTTGTTAATGATTGCTCATCCTTTACTGTCACATCGATGGCAAATGCGATTTTATGCTACAAAAATACTCTTCAAAAACATTCAATGTTCCCAAAAAACTACCTTCATCTCAAATTGTTCCAGTGACCTGCTTTGAGTACGCGCTCGAAATCCTTCCGCTTTTAAAATTGATGACACTGTGGGCACGATATCTGACAAAAATTCAATTAGTTAATTTTCCGGTTTTGTTTTTGTGGATTCTTC</canonical_amplicon>
		<polymorphic_amplicon>AATCTTGTTAATGATTGCTCATCCTTTACTGTCACATCGATGGCAAATGCGATTTTATGCTACAAAAATACTCTTCAAAAACATTCAATGTTCCCAAAAAACTACCTTCATCTCAAATTGTTCCAGTGACCTGCTTTGASTACGCGCTCGAAATCCTTCCGCTTTTAAAATTGATGACACTGTGGGCACGATATCTGACAAAAATTCAATTAGTTAATTTTCCGGTTTTGTTTTTGTGGATTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25818</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>153783</contig_pos>
        <strand>+</strand>
        <context>ATCAAGAATR[A/G]CCGGGAAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTACAAAAAAGAGGATCGTAAATTATTCGGTTTCATCTAATCAAGAATA</left_flank>
        <right_flank>CCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAAATTTCAATAACTGGTTCGGGAAAAACTTTGCATTTTTGCTGTTTCTTCTTTGCGACTTCAAACAATCTTTACTCATAAAAACTGATATTCAGCAATTTCAATGTTTTGCATGTTTCAATTTGCTTACCTAAAAATTGAAATCAAACAAAAATGATATGAAGAACGTTGAATAGTTAGCTTCTGAAATTTATTACCTACCAAGAATGGAAAATCCTAAAAATTCAACAATCTTAATTTCTAGCCCCGAAAGAGTAGCAAAATCCAAAAGCAATCACTAAAAAGAGAGAAAAAAGTGGAAGATCTAATAATGAGTATTCAGAAGGGTTTCTTTTTTTTCGTGCCAAATCAGCCTAGTGACGAAGAATGATAAAAGTTTTGTATGGCTTCCTTCCTGGAGCTACGTGTATTTCAGTTCTTGATTGAGAAAAGTTTGAGACTACAAAAACTACAAAAAAGAGGATCGTAAATTATTCGGTTTCATCTAATCAAGAATATCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCCGTCATGTGCACCTTCATCAAAAAATAACTAATTAGACGAAGTATAAATGAAGACAGAGAGAAGGGGGATTTTTGTCCGAGAAGAGAAAGTTTTTGGATTCGTAAGCAAAGCCATACAAGAAGGATTGGCTGTTGCGACTCGGATTGACGTCACACGTGGATTATCAACGCTATATCAAAAGCATTCAAAGTAGTAGTCGTTGGGGAGATGGAGAAAGAGAGACAGGAAATGCAAAAAGGGACAAAGTTTTAAGGATACGTTTCTGGAAGAGAAGTCTAGAAAATGTTGTACCAGGACCAGTGGTGGTGAACAATTGATGTACCTAAATTATATTTCTGTT</canonical>
            <polymorphic>TCAAAATTTCAATAACTGGTTCGGGAAAAACTTTGCATTTTTGCTGTTTCTTCTTTGCGACTTCAAACAATCTTTACTCATAAAAACTGATATTCAGCAATTTCAATGTTTTGCATGTTTCAATTTGCTTACCTAAAAATTGAAATCAAACAAAAATGATATGAAGAACGTTGAATAGTTAGCTTCTGAAATTTATTACCTACCAAGAATGGAAAATCCTAAAAATTCAACAATCTTAATTTCTAGCCCCGAAAGAGTAGCAAAATCCAAAAGCAATCACTAAAAAGAGAGAAAAAAGTGGAAGATCTAATAATGAGTATTCAGAAGGGTTTCTTTTTTTTCGTGCCAAATCAGCCTAGTGACGAAGAATGATAAAAGTTTTGTATGGCTTCCTTCCTGGAGCTACGTGTATTTCAGTTCTTGATTGAGAAAAGTTTGAGACTACAAAAACTACAAAAAAGAGGATCGTAAATTATTCGGTTTCATCTAATCAAGAATARCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCCGTCATGTGCACCTTCATCAAAAAATAACTAATTAGACGAAGTATAAATGAAGACAGAGAGAAGGGGGATTTTTGTCCGAGAAGAGAAAGTTTTTGGATTCGTAAGCAAAGCCATACAAGAAGGATTGGCTGTTGCGACTCGGATTGACGTCACACGTGGATTATCAACGCTATATCAAAAGCATTCAAAGTAGTAGTCGTTGGGGAGATGGAGAAAGAGAGACAGGAAATGCAAAAAGGGACAAAGTTTTAAGGATACGTTTCTGGAAGAGAAGTCTAGAAAATGTTGTACCAGGACCAGTGGTGGTGAACAATTGATGTACCTAAATTATATTTCTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>500 395 105</canonical_bands>
                <polymorphic_bands>605 395</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTGATTGAGAAAAGTTTGAGAC</pcr_primer_p1>
		<pcr_primer_p2>GGAGGGATTAAGATTTGTTATTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CTTGATTGAGAAAAGTTTGAGACTACAAAAACTACAAAAAAGAGGATCGTAAATTATTCGGTTTCATCTAATCAAGAATATCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCC</canonical_amplicon>
		<polymorphic_amplicon>CTTGATTGAGAAAAGTTTGAGACTACAAAAACTACAAAAAAGAGGATCGTAAATTATTCGGTTTCATCTAATCAAGAATARCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25819</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>153830</contig_pos>
        <strand>+</strand>
        <context>AGGTAACGTT[A/G]AAAAAACTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTT</left_flank>
        <right_flank>AAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTCTTTGCGACTTCAAACAATCTTTACTCATAAAAACTGATATTCAGCAATTTCAATGTTTTGCATGTTTCAATTTGCTTACCTAAAAATTGAAATCAAACAAAAATGATATGAAGAACGTTGAATAGTTAGCTTCTGAAATTTATTACCTACCAAGAATGGAAAATCCTAAAAATTCAACAATCTTAATTTCTAGCCCCGAAAGAGTAGCAAAATCCAAAAGCAATCACTAAAAAGAGAGAAAAAAGTGGAAGATCTAATAATGAGTATTCAGAAGGGTTTCTTTTTTTTCGTGCCAAATCAGCCTAGTGACGAAGAATGATAAAAGTTTTGTATGGCTTCCTTCCTGGAGCTACGTGTATTTCAGTTCTTGATTGAGAAAAGTTTGAGACTACAAAAACTACAAAAAAGAGGATCGTAAATTATTCGGTTTCATCTAATCAAGAATATCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCCGTCATGTGCACCTTCATCAAAAAATAACTAATTAGACGAAGTATAAATGAAGACAGAGAGAAGGGGGATTTTTGTCCGAGAAGAGAAAGTTTTTGGATTCGTAAGCAAAGCCATACAAGAAGGATTGGCTGTTGCGACTCGGATTGACGTCACACGTGGATTATCAACGCTATATCAAAAGCATTCAAAGTAGTAGTCGTTGGGGAGATGGAGAAAGAGAGACAGGAAATGCAAAAAGGGACAAAGTTTTAAGGATACGTTTCTGGAAGAGAAGTCTAGAAAATGTTGTACCAGGACCAGTGGTGGTGAACAATTGATGTACCTAAATTATATTTCTGTTACAGGAACTTTAAATTATAGATCCAATCTTGACTGATTTCATTGCAA</canonical>
            <polymorphic>TTCTTCTTTGCGACTTCAAACAATCTTTACTCATAAAAACTGATATTCAGCAATTTCAATGTTTTGCATGTTTCAATTTGCTTACCTAAAAATTGAAATCAAACAAAAATGATATGAAGAACGTTGAATAGTTAGCTTCTGAAATTTATTACCTACCAAGAATGGAAAATCCTAAAAATTCAACAATCTTAATTTCTAGCCCCGAAAGAGTAGCAAAATCCAAAAGCAATCACTAAAAAGAGAGAAAAAAGTGGAAGATCTAATAATGAGTATTCAGAAGGGTTTCTTTTTTTTCGTGCCAAATCAGCCTAGTGACGAAGAATGATAAAAGTTTTGTATGGCTTCCTTCCTGGAGCTACGTGTATTTCAGTTCTTGATTGAGAAAAGTTTGAGACTACAAAAACTACAAAAAAGAGGATCGTAAATTATTCGGTTTCATCTAATCAAGAATATCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTRAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCCGTCATGTGCACCTTCATCAAAAAATAACTAATTAGACGAAGTATAAATGAAGACAGAGAGAAGGGGGATTTTTGTCCGAGAAGAGAAAGTTTTTGGATTCGTAAGCAAAGCCATACAAGAAGGATTGGCTGTTGCGACTCGGATTGACGTCACACGTGGATTATCAACGCTATATCAAAAGCATTCAAAGTAGTAGTCGTTGGGGAGATGGAGAAAGAGAGACAGGAAATGCAAAAAGGGACAAAGTTTTAAGGATACGTTTCTGGAAGAGAAGTCTAGAAAATGTTGTACCAGGACCAGTGGTGGTGAACAATTGATGTACCTAAATTATATTTCTGTTACAGGAACTTTAAATTATAGATCCAATCTTGACTGATTTCATTGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>286 259 189 105 101 37 23</canonical_bands>
                <polymorphic_bands>286 259 189 128 101 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGGTTTCATCTAATCAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>CCCTTCTCTCTGTCTTCATTTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCGGTTTCATCTAATCAAGAATATCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCCGTCATGTGCACCTTCATCAAAAAATAACTAATTAGACGAAGTATAAATGAAGACAGAGAGAAGGG</canonical_amplicon>
		<polymorphic_amplicon>TCGGTTTCATCTAATCAAGAATATCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTRAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCCGTCATGTGCACCTTCATCAAAAAATAACTAATTAGACGAAGTATAAATGAAGACAGAGAGAAGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25820</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>153960</contig_pos>
        <strand>+</strand>
        <context>TGCACCTTCA[A/T]CAAAAAATAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCAGAAGTTATAAATAACAAATCTTAATCCCTCCGTCATGTGCACCTTCA</left_flank>
        <right_flank>CAAAAAATAACTAATTAGACGAAGTATAAATGAAGACAGAGAGAAGGGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTAGCTTCTGAAATTTATTACCTACCAAGAATGGAAAATCCTAAAAATTCAACAATCTTAATTTCTAGCCCCGAAAGAGTAGCAAAATCCAAAAGCAATCACTAAAAAGAGAGAAAAAAGTGGAAGATCTAATAATGAGTATTCAGAAGGGTTTCTTTTTTTTCGTGCCAAATCAGCCTAGTGACGAAGAATGATAAAAGTTTTGTATGGCTTCCTTCCTGGAGCTACGTGTATTTCAGTTCTTGATTGAGAAAAGTTTGAGACTACAAAAACTACAAAAAAGAGGATCGTAAATTATTCGGTTTCATCTAATCAAGAATATCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCCGTCATGTGCACCTTCATCAAAAAATAACTAATTAGACGAAGTATAAATGAAGACAGAGAGAAGGGGGATTTTTGTCCGAGAAGAGAAAGTTTTTGGATTCGTAAGCAAAGCCATACAAGAAGGATTGGCTGTTGCGACTCGGATTGACGTCACACGTGGATTATCAACGCTATATCAAAAGCATTCAAAGTAGTAGTCGTTGGGGAGATGGAGAAAGAGAGACAGGAAATGCAAAAAGGGACAAAGTTTTAAGGATACGTTTCTGGAAGAGAAGTCTAGAAAATGTTGTACCAGGACCAGTGGTGGTGAACAATTGATGTACCTAAATTATATTTCTGTTACAGGAACTTTAAATTATAGATCCAATCTTGACTGATTTCATTGCAATTTCCACGCAAATGAGAATCATCTTACAAAAAGCAGAAAAGCCCAAAAGACAAATTGTCAGTGTAAAAAAAACTGTTTCGAAAACCTTCTAAATGTTTCCAGAAAAGCAACCACTACTACTTTGAATCGT</canonical>
            <polymorphic>GTTAGCTTCTGAAATTTATTACCTACCAAGAATGGAAAATCCTAAAAATTCAACAATCTTAATTTCTAGCCCCGAAAGAGTAGCAAAATCCAAAAGCAATCACTAAAAAGAGAGAAAAAAGTGGAAGATCTAATAATGAGTATTCAGAAGGGTTTCTTTTTTTTCGTGCCAAATCAGCCTAGTGACGAAGAATGATAAAAGTTTTGTATGGCTTCCTTCCTGGAGCTACGTGTATTTCAGTTCTTGATTGAGAAAAGTTTGAGACTACAAAAACTACAAAAAAGAGGATCGTAAATTATTCGGTTTCATCTAATCAAGAATATCCGGGAAGTTTTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCCGTCATGTGCACCTTCAWCAAAAAATAACTAATTAGACGAAGTATAAATGAAGACAGAGAGAAGGGGGATTTTTGTCCGAGAAGAGAAAGTTTTTGGATTCGTAAGCAAAGCCATACAAGAAGGATTGGCTGTTGCGACTCGGATTGACGTCACACGTGGATTATCAACGCTATATCAAAAGCATTCAAAGTAGTAGTCGTTGGGGAGATGGAGAAAGAGAGACAGGAAATGCAAAAAGGGACAAAGTTTTAAGGATACGTTTCTGGAAGAGAAGTCTAGAAAATGTTGTACCAGGACCAGTGGTGGTGAACAATTGATGTACCTAAATTATATTTCTGTTACAGGAACTTTAAATTATAGATCCAATCTTGACTGATTTCATTGCAATTTCCACGCAAATGAGAATCATCTTACAAAAAGCAGAAAAGCCCAAAAGACAAATTGTCAGTGTAAAAAAAACTGTTTCGAAAACCTTCTAAATGTTTCCAGAAAAGCAACCACTACTACTTTGAATCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGAGTTGAGTTAATACACGAT</pcr_primer_p1>
		<pcr_primer_p2>GAATCCAAAAACTTTCTCTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCCGTCATGTGCACCTTCATCAAAAAATAACTAATTAGACGAAGTATAAATGAAGACAGAGAGAAGGGGGATTTTTGTCCGAGAAGAGAAAGTTTTTGGATTC</canonical_amplicon>
		<polymorphic_amplicon>TTCGAGTTGAGTTAATACACGATTGGAGGTAACGTTAAAAAAACTACAAAATTCAGTCATAAGAGTTTTAGAGAATTCTTTGAATGTCTAGGTTCTAAATAAAGAAAAGTGCAAACCCAGAAGTTATAAATAACAAATCTTAATCCCTCCGTCATGTGCACCTTCAWCAAAAAATAACTAATTAGACGAAGTATAAATGAAGACAGAGAGAAGGGGGATTTTTGTCCGAGAAGAGAAAGTTTTTGGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25821</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>172620</contig_pos>
        <strand></strand>
        <context>tcaaaaaaaa[C/T]tccttcatcg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAA</left_flank>
        <right_flank>TCCTTCATCGAGAAAAACGCATCGAAAAAAACGCTGAAAGCCCTTAAGGA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTCGGAAATGAAAATTATACAAGCTCACTGATCAAATTGTGCCATATTACTTTTCAACTTCCTGATTTCAGCTTAGAAACTCGACATTCTACTTGGCAAATACTATCATTTGGCTGTCACTTGCTATCATAGCCAATGTGACACTTTTCTATAAGTTAGAAAAAGCAAAAGAGCGATTGATTACGGTACAAAGAAGTGGGATATCATTTAGAGCACAAGTTTCGATTTCAAAGACTACGGTGGCGATGATTATATTTTACATGACGAATGGAGTTTTTATTGTGGGTAATTAAAGTAAAATAAGGGTTTTGACACAAAAGTCTTTAAGTGAATGAAATAACAAAAAAATTTAAAATTCGTCAATTATTTGAATTTTTGGATAAAACTTAGTTCAATATAAGACTTAAAGGTGGTCTACGGTGAAATTTTTATTGCTTCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAACTCCTTCATCGAGAAAAACGCATCGAAAAAAACGCTGAAAGCCCTTAAGGACAAGCTTTTTTTTCTAGGCCGCCCGGTGAGTAAAAGCGCACAAATTTAAACTTTTAAAATTTTTTCGCTCGTTCTCTCTTTTTTTCGGTTTTTTCAAGGTTTTTCAAGGTTTTTGTCAATTTTTCTTCCAAATACATCGGAAAACTTGAANNNNNNNNNNACTCACCGGGCGGCCTAGAAAAAAGCTCGTCCCTACGGGCTTTCAGCGTATGCTTTTTTCTCGATGAAGGAATTTTTTTGAATTTTTTTCTTTATTTTATGTCAATCTGCATTTTTGCACATTTTGATGCAATAAAAAATGACACCGTAGACCACCTTTAAAAAAAGCTACAATAACAACGATTATGTAAAACCTTCCAAATACAAAGTTTCTGAAACCGCAATTATTTTTCATCTGCTCTACTTGATATTCTACGGCACCACGTCTCCAATGGCCTATAGTGCAGTAAT</canonical>
            <polymorphic>TTTCTCGGAAATGAAAATTATACAAGCTCACTGATCAAATTGTGCCATATTACTTTTCAACTTCCTGATTTCAGCTTAGAAACTCGACATTCTACTTGGCAAATACTATCATTTGGCTGTCACTTGCTATCATAGCCAATGTGACACTTTTCTATAAGTTAGAAAAAGCAAAAGAGCGATTGATTACGGTACAAAGAAGTGGGATATCATTTAGAGCACAAGTTTCGATTTCAAAGACTACGGTGGCGATGATTATATTTTACATGACGAATGGAGTTTTTATTGTGGGTAATTAAAGTAAAATAAGGGTTTTGACACAAAAGTCTTTAAGTGAATGAAATAACAAAAAAATTTAAAATTCGTCAATTATTTGAATTTTTGGATAAAACTTAGTTCAATATAAGACTTAAAGGTGGTCTACGGTGAAATTTTTATTGCTTCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAAYTCCTTCATCGAGAAAAACGCATCGAAAAAAACGCTGAAAGCCCTTAAGGACAAGCTTTTTTTTCTAGGCCGCCCGGTGAGTAAAAGCGCACAAATTTAAACTTTTAAAATTTTTTCGCTCGTTCTCTCTTTTTTTCGGTTTTTTCAAGGTTTTTCAAGGTTTTTGTCAATTTTTCTTCCAAATACATCGGAAAACTTGAANNNNNNNNNNACTCACCGGGCGGCCTAGAAAAAAGCTCGTCCCTACGGGCTTTCAGCGTATGCTTTTTTCTCGATGAAGGAATTTTTTTGAATTTTTTTCTTTATTTTATGTCAATCTGCATTTTTGCACATTTTGATGCAATAAAAAATGACACCGTAGACCACCTTTAAAAAAAGCTACAATAACAACGATTATGTAAAACCTTCCAAATACAAAGTTTCTGAAACCGCAATTATTTTTCATCTGCTCTACTTGATATTCTACGGCACCACGTCTCCAATGGCCTATAGTGCAGTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTTTTGGATAAAACTTAGTTCA</pcr_primer_p1>
		<pcr_primer_p2>AATCGTTGTTATTGTAGCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>522</pcr_amplicon_size>
		<canonical_amplicon>GAATTTTTGGATAAAACTTAGTTCAATATAAGACTTAAAGGTGGTCTACGGTGAAATTTTTATTGCTTCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAACTCCTTCATCGAGAAAAACGCATCGAAAAAAACGCTGAAAGCCCTTAAGGACAAGCTTTTTTTTCTAGGCCGCCCGGTGAGTAAAAGCGCACAAATTTAAACTTTTAAAATTTTTTCGCTCGTTCTCTCTTTTTTTCGGTTTTTTCAAGGTTTTTCAAGGTTTTTGTCAATTTTTCTTCCAAATACATCGGAAAACTTGAANNNNNNNNNNACTCACCGGGCGGCCTAGAAAAAAGCTCGTCCCTACGGGCTTTCAGCGTATGCTTTTTTCTCGATGAAGGAATTTTTTTGAATTTTTTTCTTTATTTTATGTCAATCTGCATTTTTGCACATTTTGATGCAATAAAAAATGACACCGTAGACCACCTTTAAAAAAAGCTACAATAACAACGATT</canonical_amplicon>
		<polymorphic_amplicon>GAATTTTTGGATAAAACTTAGTTCAATATAAGACTTAAAGGTGGTCTACGGTGAAATTTTTATTGCTTCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAAYTCCTTCATCGAGAAAAACGCATCGAAAAAAACGCTGAAAGCCCTTAAGGACAAGCTTTTTTTTCTAGGCCGCCCGGTGAGTAAAAGCGCACAAATTTAAACTTTTAAAATTTTTTCGCTCGTTCTCTCTTTTTTTCGGTTTTTTCAAGGTTTTTCAAGGTTTTTGTCAATTTTTCTTCCAAATACATCGGAAAACTTGAANNNNNNNNNNACTCACCGGGCGGCCTAGAAAAAAGCTCGTCCCTACGGGCTTTCAGCGTATGCTTTTTTCTCGATGAAGGAATTTTTTTGAATTTTTTTCTTTATTTTATGTCAATCTGCATTTTTGCACATTTTGATGCAATAAAAAATGACACCGTAGACCACCTTTAAAAAAAGCTACAATAACAACGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25822</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>208994</contig_pos>
        <strand>+</strand>
        <context>TTTTTATAGG[G/T]TTTCTGAAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATCATGATATTCTCATCTCTCTGAAACTTGTCAGCTGGGTTTTTATAGG</left_flank>
        <right_flank>TTTCTGAAGCGGTTTTATAAATTTGTTTGTGTTCGGAAGATTTTTTTGGG</right_flank>
        <qual_score>130</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGTAGCTAATGGAAACCCCCAATTCTCCGTTTCCTATTTTTGTTAAATCAAAAAGTTGACTTGATTTTATTGATAATAGACGTCCAATTGAGTCACTGAAACATCCCAATTATCCCTTAACAAAAGCAGCCAATGGAATATTGCCTCCTCCTTTTGCGCAACGATAACAAATGCATGTTGGACGTCCCTTTCGTTTCTGACAGTTGCCAGTTCCGCAATTCTGGAAATAATTGTTTTAGAAAAACTTGCACGACCAAATTGAATTTTACAAACATCAAATCTAGAAGTTCTGAAACCGCAATATCTCACCTGCATACTACAACTTGTAATACAAAGTCCATGAGCAGCTTTGCTCAAAATTGGAACATCCATTCTGGCGCACGAGCTCAAGTCAATGGCTACAGTGAGAGAAGTGAACACCAACAAAGAAATCAAAAGATTATGAAAAATCATGATATTCTCATCTCTCTGAAACTTGTCAGCTGGGTTTTTATAGGGTTTCTGAAGCGGTTTTATAAATTTGTTTGTGTTCGGAAGATTTTTTTGGGGGAAAAGTTTTTATAGTTTCCAAAAAGTCAGAAGATCAGAACTCCTCTATGTGGAATTTGGTTTTCCATTTGTTAGACGTTTTTTATGTTTTTATTTCTGGAACTTGGCATTGCGATTGCAGAATCATAAGCTTTTAGTCATACATAATTTTCAGCTGCTTCTTGAAGACAAAATTAACGGCAACAAAGATGAAAAATTCTTGAGATAGGGCTCAAAATTCGGGTCCAAAATTCAATTTGAAGGAGGAGACAGTATTCATTTTTGCGAGACTCTGTACAGGGATCGATGTAACGGTTTTAAAGGTTGCGACAGCGTAGCTGATAGTGAGTCGGTAGCGACGCAGCACCTTCAATATTTTCCCTGCAAGTTCAACTCCTCGAGGGGAATATGAACATAATTTATTATATATCTTTTGAAACTAGAAAATTTTACTTTTCAATATTTTGAAA</canonical>
            <polymorphic>AATGTAGCTAATGGAAACCCCCAATTCTCCGTTTCCTATTTTTGTTAAATCAAAAAGTTGACTTGATTTTATTGATAATAGACGTCCAATTGAGTCACTGAAACATCCCAATTATCCCTTAACAAAAGCAGCCAATGGAATATTGCCTCCTCCTTTTGCGCAACGATAACAAATGCATGTTGGACGTCCCTTTCGTTTCTGACAGTTGCCAGTTCCGCAATTCTGGAAATAATTGTTTTAGAAAAACTTGCACGACCAAATTGAATTTTACAAACATCAAATCTAGAAGTTCTGAAACCGCAATATCTCACCTGCATACTACAACTTGTAATACAAAGTCCATGAGCAGCTTTGCTCAAAATTGGAACATCCATTCTGGCGCACGAGCTCAAGTCAATGGCTACAGTGAGAGAAGTGAACACCAACAAAGAAATCAAAAGATTATGAAAAATCATGATATTCTCATCTCTCTGAAACTTGTCAGCTGGGTTTTTATAGGKTTTCTGAAGCGGTTTTATAAATTTGTTTGTGTTCGGAAGATTTTTTTGGGGGAAAAGTTTTTATAGTTTCCAAAAAGTCAGAAGATCAGAACTCCTCTATGTGGAATTTGGTTTTCCATTTGTTAGACGTTTTTTATGTTTTTATTTCTGGAACTTGGCATTGCGATTGCAGAATCATAAGCTTTTAGTCATACATAATTTTCAGCTGCTTCTTGAAGACAAAATTAACGGCAACAAAGATGAAAAATTCTTGAGATAGGGCTCAAAATTCGGGTCCAAAATTCAATTTGAAGGAGGAGACAGTATTCATTTTTGCGAGACTCTGTACAGGGATCGATGTAACGGTTTTAAAGGTTGCGACAGCGTAGCTGATAGTGAGTCGGTAGCGACGCAGCACCTTCAATATTTTCCCTGCAAGTTCAACTCCTCGAGGGGAATATGAACATAATTTATTATATATCTTTTGAAACTAGAAAATTTTACTTTTCAATATTTTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGAAGTGAACACCAACAAAG</pcr_primer_p1>
		<pcr_primer_p2>CCAAGTTCCAGAAATAAAAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAGAAGTGAACACCAACAAAGAAATCAAAAGATTATGAAAAATCATGATATTCTCATCTCTCTGAAACTTGTCAGCTGGGTTTTTATAGGGTTTCTGAAGCGGTTTTATAAATTTGTTTGTGTTCGGAAGATTTTTTTGGGGGAAAAGTTTTTATAGTTTCCAAAAAGTCAGAAGATCAGAACTCCTCTATGTGGAATTTGGTTTTCCATTTGTTAGACGTTTTTTATGTTTTTATTTCTGGAACTTGG</canonical_amplicon>
		<polymorphic_amplicon>AGAGAAGTGAACACCAACAAAGAAATCAAAAGATTATGAAAAATCATGATATTCTCATCTCTCTGAAACTTGTCAGCTGGGTTTTTATAGGKTTTCTGAAGCGGTTTTATAAATTTGTTTGTGTTCGGAAGATTTTTTTGGGGGAAAAGTTTTTATAGTTTCCAAAAAGTCAGAAGATCAGAACTCCTCTATGTGGAATTTGGTTTTCCATTTGTTAGACGTTTTTTATGTTTTTATTTCTGGAACTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25823</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>209014</contig_pos>
        <strand>+</strand>
        <context>CGGTTTTATA[A/G]ATTTGTTTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGAAACTTGTCAGCTGGGTTTTTATAGGGTTTCTGAAGCGGTTTTATA</left_flank>
        <right_flank>ATTTGTTTGTGTTCGGAAGATTTTTTTGGGGGAAAAGTTTTTATAGTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAATTCTCCGTTTCCTATTTTTGTTAAATCAAAAAGTTGACTTGATTTTATTGATAATAGACGTCCAATTGAGTCACTGAAACATCCCAATTATCCCTTAACAAAAGCAGCCAATGGAATATTGCCTCCTCCTTTTGCGCAACGATAACAAATGCATGTTGGACGTCCCTTTCGTTTCTGACAGTTGCCAGTTCCGCAATTCTGGAAATAATTGTTTTAGAAAAACTTGCACGACCAAATTGAATTTTACAAACATCAAATCTAGAAGTTCTGAAACCGCAATATCTCACCTGCATACTACAACTTGTAATACAAAGTCCATGAGCAGCTTTGCTCAAAATTGGAACATCCATTCTGGCGCACGAGCTCAAGTCAATGGCTACAGTGAGAGAAGTGAACACCAACAAAGAAATCAAAAGATTATGAAAAATCATGATATTCTCATCTCTCTGAAACTTGTCAGCTGGGTTTTTATAGGGTTTCTGAAGCGGTTTTATAAATTTGTTTGTGTTCGGAAGATTTTTTTGGGGGAAAAGTTTTTATAGTTTCCAAAAAGTCAGAAGATCAGAACTCCTCTATGTGGAATTTGGTTTTCCATTTGTTAGACGTTTTTTATGTTTTTATTTCTGGAACTTGGCATTGCGATTGCAGAATCATAAGCTTTTAGTCATACATAATTTTCAGCTGCTTCTTGAAGACAAAATTAACGGCAACAAAGATGAAAAATTCTTGAGATAGGGCTCAAAATTCGGGTCCAAAATTCAATTTGAAGGAGGAGACAGTATTCATTTTTGCGAGACTCTGTACAGGGATCGATGTAACGGTTTTAAAGGTTGCGACAGCGTAGCTGATAGTGAGTCGGTAGCGACGCAGCACCTTCAATATTTTCCCTGCAAGTTCAACTCCTCGAGGGGAATATGAACATAATTTATTATATATCTTTTGAAACTAGAAAATTTTACTTTTCAATATTTTGAAAATTTGGATCACTTCCAGGAA</canonical>
            <polymorphic>CCAATTCTCCGTTTCCTATTTTTGTTAAATCAAAAAGTTGACTTGATTTTATTGATAATAGACGTCCAATTGAGTCACTGAAACATCCCAATTATCCCTTAACAAAAGCAGCCAATGGAATATTGCCTCCTCCTTTTGCGCAACGATAACAAATGCATGTTGGACGTCCCTTTCGTTTCTGACAGTTGCCAGTTCCGCAATTCTGGAAATAATTGTTTTAGAAAAACTTGCACGACCAAATTGAATTTTACAAACATCAAATCTAGAAGTTCTGAAACCGCAATATCTCACCTGCATACTACAACTTGTAATACAAAGTCCATGAGCAGCTTTGCTCAAAATTGGAACATCCATTCTGGCGCACGAGCTCAAGTCAATGGCTACAGTGAGAGAAGTGAACACCAACAAAGAAATCAAAAGATTATGAAAAATCATGATATTCTCATCTCTCTGAAACTTGTCAGCTGGGTTTTTATAGGGTTTCTGAAGCGGTTTTATARATTTGTTTGTGTTCGGAAGATTTTTTTGGGGGAAAAGTTTTTATAGTTTCCAAAAAGTCAGAAGATCAGAACTCCTCTATGTGGAATTTGGTTTTCCATTTGTTAGACGTTTTTTATGTTTTTATTTCTGGAACTTGGCATTGCGATTGCAGAATCATAAGCTTTTAGTCATACATAATTTTCAGCTGCTTCTTGAAGACAAAATTAACGGCAACAAAGATGAAAAATTCTTGAGATAGGGCTCAAAATTCGGGTCCAAAATTCAATTTGAAGGAGGAGACAGTATTCATTTTTGCGAGACTCTGTACAGGGATCGATGTAACGGTTTTAAAGGTTGCGACAGCGTAGCTGATAGTGAGTCGGTAGCGACGCAGCACCTTCAATATTTTCCCTGCAAGTTCAACTCCTCGAGGGGAATATGAACATAATTTATTATATATCTTTTGAAACTAGAAAATTTTACTTTTCAATATTTTGAAAATTTGGATCACTTCCAGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>256 243 196 141 85 24 21 21 13</canonical_bands>
                <polymorphic_bands>341 243 196 141 24 21 21 13</polymorphic_bands>
            </assay>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>162 160 109 96 92 85 65 29 28 26 24 23 22 21 21 13 12 5 5 2</canonical_bands>
                <polymorphic_bands>245 162 109 96 92 65 29 28 26 24 23 22 21 21 13 12 5 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTCATCTCTCTGAAACTTGTC</pcr_primer_p1>
		<pcr_primer_p2>GCAGCTGAAAATTATGTATGACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTCATCTCTCTGAAACTTGTCAGCTGGGTTTTTATAGGGTTTCTGAAGCGGTTTTATAAATTTGTTTGTGTTCGGAAGATTTTTTTGGGGGAAAAGTTTTTATAGTTTCCAAAAAGTCAGAAGATCAGAACTCCTCTATGTGGAATTTGGTTTTCCATTTGTTAGACGTTTTTTATGTTTTTATTTCTGGAACTTGGCATTGCGATTGCAGAATCATAAGCTTTTAGTCATACATAATTTTCAGCTGC</canonical_amplicon>
		<polymorphic_amplicon>TTCTCATCTCTCTGAAACTTGTCAGCTGGGTTTTTATAGGGTTTCTGAAGCGGTTTTATARATTTGTTTGTGTTCGGAAGATTTTTTTGGGGGAAAAGTTTTTATAGTTTCCAAAAAGTCAGAAGATCAGAACTCCTCTATGTGGAATTTGGTTTTCCATTTGTTAGACGTTTTTTATGTTTTTATTTCTGGAACTTGGCATTGCGATTGCAGAATCATAAGCTTTTAGTCATACATAATTTTCAGCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25824</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>209641</contig_pos>
        <strand>+</strand>
        <context>CCCCAATTCC[A/C]ATTCTCCTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACACTTTTGAGTCTCATGCCAACTCATTCTTTATACTTTTCCCCAATTCC</left_flank>
        <right_flank>ATTCTCCTAAAATGACATACTACAATTCTTCCCCATATGCAGGAACCGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGGAACTTGGCATTGCGATTGCAGAATCATAAGCTTTTAGTCATACATAATTTTCAGCTGCTTCTTGAAGACAAAATTAACGGCAACAAAGATGAAAAATTCTTGAGATAGGGCTCAAAATTCGGGTCCAAAATTCAATTTGAAGGAGGAGACAGTATTCATTTTTGCGAGACTCTGTACAGGGATCGATGTAACGGTTTTAAAGGTTGCGACAGCGTAGCTGATAGTGAGTCGGTAGCGACGCAGCACCTTCAATATTTTCCCTGCAAGTTCAACTCCTCGAGGGGAATATGAACATAATTTATTATATATCTTTTGAAACTAGAAAATTTTACTTTTCAATATTTTGAAAATTTGGATCACTTCCAGGAACGTTCCGCCTAATCAGATGACGAATTTTTCCAACAAACAAAGCCGGAACTTATCACCTGCCTCGAGTCTGGATCTAACACTTTTGAGTCTCATGCCAACTCATTCTTTATACTTTTCCCCAATTCCAATTCTCCTAAAATGACATACTACAATTCTTCCCCATATGCAGGAACCGTTCATTTCGATTTATCCTATATCAATTATCAATTTGATTGGAAACAATTTCCCACAATTTTCGCTACTCTTCCATGGGTTTACATGATTCCAAGTTTTATAGTCATTTGTAAAATACTTTATGTTTACCTTGATTCGAATTGGAAGAAATCGGAACCGGGGAAAAATCAACATGTGTTTCTGATCATCTCATTATCACAACTTACTTGTTTTGCATTGTTTTTCTCGGATTTTTGGATGACAAGACTTCCATCAACTGGAATATTCACTGCTTGGTGTGCAACTATTGCTCCAAATCATTGGCTAAAACTAATTTTGTTTTTTGCATTATACTTTAATTATTTGGCAATGTCGTTTCCTTTCCTTATGCCAGTCGTCAGATTTATCATTGTTGCGTTTCCAAAGTCACATGTCAAGGTGAGGATTTGTTTTCAAAACTTGTATTGCCGGGAT</canonical>
            <polymorphic>CTGGAACTTGGCATTGCGATTGCAGAATCATAAGCTTTTAGTCATACATAATTTTCAGCTGCTTCTTGAAGACAAAATTAACGGCAACAAAGATGAAAAATTCTTGAGATAGGGCTCAAAATTCGGGTCCAAAATTCAATTTGAAGGAGGAGACAGTATTCATTTTTGCGAGACTCTGTACAGGGATCGATGTAACGGTTTTAAAGGTTGCGACAGCGTAGCTGATAGTGAGTCGGTAGCGACGCAGCACCTTCAATATTTTCCCTGCAAGTTCAACTCCTCGAGGGGAATATGAACATAATTTATTATATATCTTTTGAAACTAGAAAATTTTACTTTTCAATATTTTGAAAATTTGGATCACTTCCAGGAACGTTCCGCCTAATCAGATGACGAATTTTTCCAACAAACAAAGCCGGAACTTATCACCTGCCTCGAGTCTGGATCTAACACTTTTGAGTCTCATGCCAACTCATTCTTTATACTTTTCCCCAATTCCMATTCTCCTAAAATGACATACTACAATTCTTCCCCATATGCAGGAACCGTTCATTTCGATTTATCCTATATCAATTATCAATTTGATTGGAAACAATTTCCCACAATTTTCGCTACTCTTCCATGGGTTTACATGATTCCAAGTTTTATAGTCATTTGTAAAATACTTTATGTTTACCTTGATTCGAATTGGAAGAAATCGGAACCGGGGAAAAATCAACATGTGTTTCTGATCATCTCATTATCACAACTTACTTGTTTTGCATTGTTTTTCTCGGATTTTTGGATGACAAGACTTCCATCAACTGGAATATTCACTGCTTGGTGTGCAACTATTGCTCCAAATCATTGGCTAAAACTAATTTTGTTTTTTGCATTATACTTTAATTATTTGGCAATGTCGTTTCCTTTCCTTATGCCAGTCGTCAGATTTATCATTGTTGCGTTTCCAAAGTCACATGTCAAGGTGAGGATTTGTTTTCAAAACTTGTATTGCCGGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>173 162 117 98 82 49 48 43 29 26 25 24 24 23 21 15 13 10 7 6 5</canonical_bands>
                <polymorphic_bands>173 162 117 98 82 49 48 43 30 29 26 25 24 23 21 15 13 10 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGGATCTAACACTTTTGAGTC</pcr_primer_p1>
		<pcr_primer_p2>AATTCGAATCAAGGTAAACATAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTGGATCTAACACTTTTGAGTCTCATGCCAACTCATTCTTTATACTTTTCCCCAATTCCAATTCTCCTAAAATGACATACTACAATTCTTCCCCATATGCAGGAACCGTTCATTTCGATTTATCCTATATCAATTATCAATTTGATTGGAAACAATTTCCCACAATTTTCGCTACTCTTCCATGGGTTTACATGATTCCAAGTTTTATAGTCATTTGTAAAATACTTTATGTTTACCTTGATTCGAATT</canonical_amplicon>
		<polymorphic_amplicon>TCTGGATCTAACACTTTTGAGTCTCATGCCAACTCATTCTTTATACTTTTCCCCAATTCCMATTCTCCTAAAATGACATACTACAATTCTTCCCCATATGCAGGAACCGTTCATTTCGATTTATCCTATATCAATTATCAATTTGATTGGAAACAATTTCCCACAATTTTCGCTACTCTTCCATGGGTTTACATGATTCCAAGTTTTATAGTCATTTGTAAAATACTTTATGTTTACCTTGATTCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25825</snp_id>
        <super_contig>c001800646.Contig1</super_contig>
        <contig_pos>210712</contig_pos>
        <strand></strand>
        <context>tcaaagtaga[G/T]cattcaaaat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGGTCAACTCCTATCTGGTGTCAATAGTCCTGATGAATCTTCAAAGTAGA</left_flank>
        <right_flank>CATTCAAAATTGAAAGAAACTTATGCACCAACCTACTTTTTTTTTCGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTAGTAACCACGATTCAAAATGATCAAATGAACTTTCGGTTTCAGACTTTCAATGATCATGAGAATCAATCTAAATTTTGAAAGAATTGAACCGAATTGCCTGATGACCATGAGAACATAAACTTTTGTCTAACTCGGCTTTCGGCTTGTAACTTCTGGTCAGAAGTTGAGGTGTTGCGCTTTTGAACTGATACTGGCCAAGTTCTAGTAAGAACTGTATAGCATTTCCGTTTTGTTTCCTGTAGTTGAGTTAATCATTGTAACTATTAGGTTGGTGCATAAGCTTCTTTCGATTCTGACTAATCTTTCGATCACGCTTCTCTCAATAGCAGAGTGGGATGGCTCAATGAAAGTAACGTTCATGAGCATCGATAGTTGTCAGCCAACGCTCCTAAATTTTCTCGATTCCATCGGCCTAGAACGAGGAAAGCTGTGAATGAAAAAGTGGGTCAACTCCTATCTGGTGTCAATAGTCCTGATGAATCTTCAAAGTAGAGCATTCAAAATTGAAAGAAACTTATGCACCAACCTACTTTTTTTTTCGAAAGAAAACTGTTTCAATACTTTCAGATTTTTTTCTAAAATACACCAAAATTTCAGAAATTCTTCAGTTAGAAGAAACATTGAACCGAAAAAAATCGACAAGAATTTTTGATAGTTTCCCAATTCGTTTGCTTTAGGCAACTGTTAGAAAGTGATAATTAAAAAAAAACTATTCCCACACACTGATATTTTCATGTTTGTATAAATTCTAACTACTAAATAAAGCAGTTTTCAAATGACTTAACCAAAATTAGTCCATTATAACTTGTCAATATGACAACAGTTCTGTTAAAACTCGAATTCGATAACTATAACAAGGTTTCAGGATACGAAATTGAAAAAAAGTTATGTTTCAAAAAGATCATTAAAACTGCGGGGCTATGAAACCATAATATGAAGACAATCATTTTCAATCTAAAAATTCTGATTCGCAGATCAACACCAACATTGTTAG</canonical>
            <polymorphic>ACTTTAGTAACCACGATTCAAAATGATCAAATGAACTTTCGGTTTCAGACTTTCAATGATCATGAGAATCAATCTAAATTTTGAAAGAATTGAACCGAATTGCCTGATGACCATGAGAACATAAACTTTTGTCTAACTCGGCTTTCGGCTTGTAACTTCTGGTCAGAAGTTGAGGTGTTGCGCTTTTGAACTGATACTGGCCAAGTTCTAGTAAGAACTGTATAGCATTTCCGTTTTGTTTCCTGTAGTTGAGTTAATCATTGTAACTATTAGGTTGGTGCATAAGCTTCTTTCGATTCTGACTAATCTTTCGATCACGCTTCTCTCAATAGCAGAGTGGGATGGCTCAATGAAAGTAACGTTCATGAGCATCGATAGTTGTCAGCCAACGCTCCTAAATTTTCTCGATTCCATCGGCCTAGAACGAGGAAAGCTGTGAATGAAAAAGTGGGTCAACTCCTATCTGGTGTCAATAGTCCTGATGAATCTTCAAAGTAGAKCATTCAAAATTGAAAGAAACTTATGCACCAACCTACTTTTTTTTTCGAAAGAAAACTGTTTCAATACTTTCAGATTTTTTTCTAAAATACACCAAAATTTCAGAAATTCTTCAGTTAGAAGAAACATTGAACCGAAAAAAATCGACAAGAATTTTTGATAGTTTCCCAATTCGTTTGCTTTAGGCAACTGTTAGAAAGTGATAATTAAAAAAAAACTATTCCCACACACTGATATTTTCATGTTTGTATAAATTCTAACTACTAAATAAAGCAGTTTTCAAATGACTTAACCAAAATTAGTCCATTATAACTTGTCAATATGACAACAGTTCTGTTAAAACTCGAATTCGATAACTATAACAAGGTTTCAGGATACGAAATTGAAAAAAAGTTATGTTTCAAAAAGATCATTAAAACTGCGGGGCTATGAAACCATAATATGAAGACAATCATTTTCAATCTAAAAATTCTGATTCGCAGATCAACACCAACATTGTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTGTAGTTGAGTTAATCATTGT</pcr_primer_p1>
		<pcr_primer_p2>TGAAAGTATTGAAACAGTTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>332</pcr_amplicon_size>
		<canonical_amplicon>TCCTGTAGTTGAGTTAATCATTGTAACTATTAGGTTGGTGCATAAGCTTCTTTCGATTCTGACTAATCTTTCGATCACGCTTCTCTCAATAGCAGAGTGGGATGGCTCAATGAAAGTAACGTTCATGAGCATCGATAGTTGTCAGCCAACGCTCCTAAATTTTCTCGATTCCATCGGCCTAGAACGAGGAAAGCTGTGAATGAAAAAGTGGGTCAACTCCTATCTGGTGTCAATAGTCCTGATGAATCTTCAAAGTAGAGCATTCAAAATTGAAAGAAACTTATGCACCAACCTACTTTTTTTTTCGAAAGAAAACTGTTTCAATACTTTCA</canonical_amplicon>
		<polymorphic_amplicon>TCCTGTAGTTGAGTTAATCATTGTAACTATTAGGTTGGTGCATAAGCTTCTTTCGATTCTGACTAATCTTTCGATCACGCTTCTCTCAATAGCAGAGTGGGATGGCTCAATGAAAGTAACGTTCATGAGCATCGATAGTTGTCAGCCAACGCTCCTAAATTTTCTCGATTCCATCGGCCTAGAACGAGGAAAGCTGTGAATGAAAAAGTGGGTCAACTCCTATCTGGTGTCAATAGTCCTGATGAATCTTCAAAGTAGAKCATTCAAAATTGAAAGAAACTTATGCACCAACCTACTTTTTTTTTCGAAAGAAAACTGTTTCAATACTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25826</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>71672</contig_pos>
        <strand></strand>
        <context>ttgacgactt[T/A]ctgatatctt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGACAACATGATTATCATAACATGATCAATACTTTGTCAGTTGACGACTT</left_flank>
        <right_flank>CTGATATCTTTTACTGAAACCGAGATATATGGGCTCAAATTCGACAGTAT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTTTTCGTCGAGTTCAGAATAGATCCGATTCTAATCTACTGCCAGTTTGAACGCACCCGTTTATAACACAAAAATTTCATTCGTTCTTCACTTCATTTGTCATCTCAAACACTTTTAAAATTTGCCTCAGTTTTCAGCAGAATGATCCAAGCATTACTTCTGCTTGCTTCGGTTCTTGGAGCGTCTGTATATTATTGGCAGCACAATAAAGAATGGTCATACGTGCAAACATTGGATGGAATTGATCGAGGAGAAATTATACTTCCGAATTACAGTAAGTCAGATTTTCCCACATTTTTTTTGAAATTTTAGTCTTTCAATCTTTCAAACTGTACGTTCACTAAAACGAATACTTACCGTAATTGCTCTAATAGAAGCTCATGAAATCCGTTAACTTTGAGCTTATAAATCTCGGTTGCTGTGAAAGGTATCAAAATGTTGTCAACTGACAACATGATTATCATAACATGATCAATACTTTGTCAGTTGACGACTTTCTGATATCTTTTACTGAAACCGAGATATATGGGCTCAAATTCGACAGTATGGGTGGCCTTCGATTTGAGTGTTTACAGTATTTTTTCTACATTTTTAATCATTAGTTAACAAAGTATTCACTTTTGATTTTGTATTATCATTCAGCTGGAAATTCATATTCCCCCAATTTCAGACGTTCACCCCATCCTCTATAACGAATGCGTATGGCCCATACTAGATCCCTACGAGCCGGATATTGTAAAGTATCTCAAAAATCGAAAGTGAGTTTTTTCTACAGTAATCCCAAGAATCCAAAAGATCAGAACACACATATCATGTCCACCATTTCAATTTCTCTTTTTTCCTCTCTCACCCACAGCTTTGAAACCCTCCTCCTCTAACGATAAAAACCGCCCGACTGTAAGGTCTAGCCACATTTTCTCCCGCAGTCTAATCTTTTGTCCCTTTTATGTTCATGTATTTTTCATTACAAGAAATGCCAAAAGCAAACTTGTTGGTT</canonical>
            <polymorphic>GTTTTTTTCGTCGAGTTCAGAATAGATCCGATTCTAATCTACTGCCAGTTTGAACGCACCCGTTTATAACACAAAAATTTCATTCGTTCTTCACTTCATTTGTCATCTCAAACACTTTTAAAATTTGCCTCAGTTTTCAGCAGAATGATCCAAGCATTACTTCTGCTTGCTTCGGTTCTTGGAGCGTCTGTATATTATTGGCAGCACAATAAAGAATGGTCATACGTGCAAACATTGGATGGAATTGATCGAGGAGAAATTATACTTCCGAATTACAGTAAGTCAGATTTTCCCACATTTTTTTTGAAATTTTAGTCTTTCAATCTTTCAAACTGTACGTTCACTAAAACGAATACTTACCGTAATTGCTCTAATAGAAGCTCATGAAATCCGTTAACTTTGAGCTTATAAATCTCGGTTGCTGTGAAAGGTATCAAAATGTTGTCAACTGACAACATGATTATCATAACATGATCAATACTTTGTCAGTTGACGACTTWCTGATATCTTTTACTGAAACCGAGATATATGGGCTCAAATTCGACAGTATGGGTGGCCTTCGATTTGAGTGTTTACAGTATTTTTTCTACATTTTTAATCATTAGTTAACAAAGTATTCACTTTTGATTTTGTATTATCATTCAGCTGGAAATTCATATTCCCCCAATTTCAGACGTTCACCCCATCCTCTATAACGAATGCGTATGGCCCATACTAGATCCCTACGAGCCGGATATTGTAAAGTATCTCAAAAATCGAAAGTGAGTTTTTTCTACAGTAATCCCAAGAATCCAAAAGATCAGAACACACATATCATGTCCACCATTTCAATTTCTCTTTTTTCCTCTCTCACCCACAGCTTTGAAACCCTCCTCCTCTAACGATAAAAACCGCCCGACTGTAAGGTCTAGCCACATTTTCTCCCGCAGTCTAATCTTTTGTCCCTTTTATGTTCATGTATTTTTCATTACAAGAAATGCCAAAAGCAAACTTGTTGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>240 217 198 170 130 19 16 10</canonical_bands>
                <polymorphic_bands>387 240 198 130 19 16 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTACGTTCACTAAAACGAATACT</pcr_primer_p1>
		<pcr_primer_p2>GCTGAATGATAATACAAAATCAAA</pcr_primer_p2>
		<pcr_amplicon_size>313</pcr_amplicon_size>
		<canonical_amplicon>TGTACGTTCACTAAAACGAATACTTACCGTAATTGCTCTAATAGAAGCTCATGAAATCCGTTAACTTTGAGCTTATAAATCTCGGTTGCTGTGAAAGGTATCAAAATGTTGTCAACTGACAACATGATTATCATAACATGATCAATACTTTGTCAGTTGACGACTTTCTGATATCTTTTACTGAAACCGAGATATATGGGCTCAAATTCGACAGTATGGGTGGCCTTCGATTTGAGTGTTTACAGTATTTTTTCTACATTTTTAATCATTAGTTAACAAAGTATTCACTTTTGATTTTGTATTATCATTCAGC</canonical_amplicon>
		<polymorphic_amplicon>TGTACGTTCACTAAAACGAATACTTACCGTAATTGCTCTAATAGAAGCTCATGAAATCCGTTAACTTTGAGCTTATAAATCTCGGTTGCTGTGAAAGGTATCAAAATGTTGTCAACTGACAACATGATTATCATAACATGATCAATACTTTGTCAGTTGACGACTTWCTGATATCTTTTACTGAAACCGAGATATATGGGCTCAAATTCGACAGTATGGGTGGCCTTCGATTTGAGTGTTTACAGTATTTTTTCTACATTTTTAATCATTAGTTAACAAAGTATTCACTTTTGATTTTGTATTATCATTCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25827</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>73536</contig_pos>
        <strand>+</strand>
        <context>AGGTTGTTTG[C/T]TTCCATTATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCTCCATAAAAACAATTCAGGATTGTGTGACGGTGTGAAAGGTTGTTTG</left_flank>
        <right_flank>TTCCATTATTTCAAGTTTTTCTCTTTTTACGAGATACAGATATTGAAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACATTTTCCCGCCGGGTTACTGTCGCACTCGTTTCAACTGTTTCTGGTTGTTTCGGCTTTCAGATATTTGTTTACAAACATCGCATACACTTCGCCTCAACCTTTTTTTTTCTCTTCTTTGGTCTAAATCTAACTCATTTGTTATGAAACAATTAAAACTTCTTTCCTATTAGTATCCTCTCCAGAATGTTAATGGTTTATTCAATAGTAAATAGGCCAATTATCGTAAGCGCTTTAATACAAAGAATGCCACCCAAGTCGTTAACTTTGAGCACATGTATCTCAGTTCCTGTAAAAGATACCAAAAAAGTGTCAATTGATAAAATACTTTTGATATTATGATAAACATTTAATCAGTTAATCACTTTTGATATCTTCCGCTAACACTGAGATTTCTGGGTTCAAAAACGGTTTGGGTGGCATTCTGTTAGTGTTTACGGTCAAAGCAGTCTCCATAAAAACAATTCAGGATTGTGTGACGGTGTGAAAGGTTGTTTGTTTCCATTATTTCAAGTTTTTCTCTTTTTACGAGATACAGATATTGAAATATTCGTCGCAACCTATCCGTCACAAGGACAACAAGCTACGGATGACAATTATCTGATCTATGTGTGTGTTGTTCGTTCGGAGAGAATGGAAATAAAAAAGCGGCTAACATAGCCTTCCTTATCATTTCTTCTTGTTCGTTCAGTTTTATCTTTGTGTGTTTTGGATTGCGTTGGAGACTTGGGTTCGGGTTTTTTCGCTAGGTGCAAATGTTTTAACTTGCTTAAAATATCAGGTTTATTCTCGTTCCCAGTTATATAATCTTGAATGACACTTAATTTTCTTACTCCTTTTATTCCACGCTCTGGAAATCTGAAAGCATGATGGATACTTAAAATCAGAATTATGATGCCTCCTCGTCTACATTTACACTTTCAGATTCTAATTTAATTATTTCTAGACAATCAGTTGAACTTTTCTAATCAGCTGATACAGTTCTTGATCATTAACAAG</canonical>
            <polymorphic>AACATTTTCCCGCCGGGTTACTGTCGCACTCGTTTCAACTGTTTCTGGTTGTTTCGGCTTTCAGATATTTGTTTACAAACATCGCATACACTTCGCCTCAACCTTTTTTTTTCTCTTCTTTGGTCTAAATCTAACTCATTTGTTATGAAACAATTAAAACTTCTTTCCTATTAGTATCCTCTCCAGAATGTTAATGGTTTATTCAATAGTAAATAGGCCAATTATCGTAAGCGCTTTAATACAAAGAATGCCACCCAAGTCGTTAACTTTGAGCACATGTATCTCAGTTCCTGTAAAAGATACCAAAAAAGTGTCAATTGATAAAATACTTTTGATATTATGATAAACATTTAATCAGTTAATCACTTTTGATATCTTCCGCTAACACTGAGATTTCTGGGTTCAAAAACGGTTTGGGTGGCATTCTGTTAGTGTTTACGGTCAAAGCAGTCTCCATAAAAACAATTCAGGATTGTGTGACGGTGTGAAAGGTTGTTTGYTTCCATTATTTCAAGTTTTTCTCTTTTTACGAGATACAGATATTGAAATATTCGTCGCAACCTATCCGTCACAAGGACAACAAGCTACGGATGACAATTATCTGATCTATGTGTGTGTTGTTCGTTCGGAGAGAATGGAAATAAAAAAGCGGCTAACATAGCCTTCCTTATCATTTCTTCTTGTTCGTTCAGTTTTATCTTTGTGTGTTTTGGATTGCGTTGGAGACTTGGGTTCGGGTTTTTTCGCTAGGTGCAAATGTTTTAACTTGCTTAAAATATCAGGTTTATTCTCGTTCCCAGTTATATAATCTTGAATGACACTTAATTTTCTTACTCCTTTTATTCCACGCTCTGGAAATCTGAAAGCATGATGGATACTTAAAATCAGAATTATGATGCCTCCTCGTCTACATTTACACTTTCAGATTCTAATTTAATTATTTCTAGACAATCAGTTGAACTTTTCTAATCAGCTGATACAGTTCTTGATCATTAACAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTCTCCATAAAAACAATTCAG</pcr_primer_p1>
		<pcr_primer_p2>TAAAACTGAACGAACAAGAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGTCTCCATAAAAACAATTCAGGATTGTGTGACGGTGTGAAAGGTTGTTTGTTTCCATTATTTCAAGTTTTTCTCTTTTTACGAGATACAGATATTGAAATATTCGTCGCAACCTATCCGTCACAAGGACAACAAGCTACGGATGACAATTATCTGATCTATGTGTGTGTTGTTCGTTCGGAGAGAATGGAAATAAAAAAGCGGCTAACATAGCCTTCCTTATCATTTCTTCTTGTTCGTTCAGTTTTA</canonical_amplicon>
		<polymorphic_amplicon>CAGTCTCCATAAAAACAATTCAGGATTGTGTGACGGTGTGAAAGGTTGTTTGYTTCCATTATTTCAAGTTTTTCTCTTTTTACGAGATACAGATATTGAAATATTCGTCGCAACCTATCCGTCACAAGGACAACAAGCTACGGATGACAATTATCTGATCTATGTGTGTGTTGTTCGTTCGGAGAGAATGGAAATAAAAAAGCGGCTAACATAGCCTTCCTTATCATTTCTTCTTGTTCGTTCAGTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25828</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>73594</contig_pos>
        <strand>+</strand>
        <context>ATATTCGTCG[C/G]AACCTATCCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTTCAAGTTTTTCTCTTTTTACGAGATACAGATATTGAAATATTCGTCG</left_flank>
        <right_flank>AACCTATCCGTCACAAGGACAACAAGCTACGGATGACAATTATCTGATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAGATATTTGTTTACAAACATCGCATACACTTCGCCTCAACCTTTTTTTTTCTCTTCTTTGGTCTAAATCTAACTCATTTGTTATGAAACAATTAAAACTTCTTTCCTATTAGTATCCTCTCCAGAATGTTAATGGTTTATTCAATAGTAAATAGGCCAATTATCGTAAGCGCTTTAATACAAAGAATGCCACCCAAGTCGTTAACTTTGAGCACATGTATCTCAGTTCCTGTAAAAGATACCAAAAAAGTGTCAATTGATAAAATACTTTTGATATTATGATAAACATTTAATCAGTTAATCACTTTTGATATCTTCCGCTAACACTGAGATTTCTGGGTTCAAAAACGGTTTGGGTGGCATTCTGTTAGTGTTTACGGTCAAAGCAGTCTCCATAAAAACAATTCAGGATTGTGTGACGGTGTGAAAGGTTGTTTGTTTCCATTATTTCAAGTTTTTCTCTTTTTACGAGATACAGATATTGAAATATTCGTCGCAACCTATCCGTCACAAGGACAACAAGCTACGGATGACAATTATCTGATCTATGTGTGTGTTGTTCGTTCGGAGAGAATGGAAATAAAAAAGCGGCTAACATAGCCTTCCTTATCATTTCTTCTTGTTCGTTCAGTTTTATCTTTGTGTGTTTTGGATTGCGTTGGAGACTTGGGTTCGGGTTTTTTCGCTAGGTGCAAATGTTTTAACTTGCTTAAAATATCAGGTTTATTCTCGTTCCCAGTTATATAATCTTGAATGACACTTAATTTTCTTACTCCTTTTATTCCACGCTCTGGAAATCTGAAAGCATGATGGATACTTAAAATCAGAATTATGATGCCTCCTCGTCTACATTTACACTTTCAGATTCTAATTTAATTATTTCTAGACAATCAGTTGAACTTTTCTAATCAGCTGATACAGTTCTTGATCATTAACAAGAGTATATTTAATGACTACGTTCTATACGACATTAACTTTTGATCAATTTAGATCAGTC</canonical>
            <polymorphic>TTTCAGATATTTGTTTACAAACATCGCATACACTTCGCCTCAACCTTTTTTTTTCTCTTCTTTGGTCTAAATCTAACTCATTTGTTATGAAACAATTAAAACTTCTTTCCTATTAGTATCCTCTCCAGAATGTTAATGGTTTATTCAATAGTAAATAGGCCAATTATCGTAAGCGCTTTAATACAAAGAATGCCACCCAAGTCGTTAACTTTGAGCACATGTATCTCAGTTCCTGTAAAAGATACCAAAAAAGTGTCAATTGATAAAATACTTTTGATATTATGATAAACATTTAATCAGTTAATCACTTTTGATATCTTCCGCTAACACTGAGATTTCTGGGTTCAAAAACGGTTTGGGTGGCATTCTGTTAGTGTTTACGGTCAAAGCAGTCTCCATAAAAACAATTCAGGATTGTGTGACGGTGTGAAAGGTTGTTTGTTTCCATTATTTCAAGTTTTTCTCTTTTTACGAGATACAGATATTGAAATATTCGTCGSAACCTATCCGTCACAAGGACAACAAGCTACGGATGACAATTATCTGATCTATGTGTGTGTTGTTCGTTCGGAGAGAATGGAAATAAAAAAGCGGCTAACATAGCCTTCCTTATCATTTCTTCTTGTTCGTTCAGTTTTATCTTTGTGTGTTTTGGATTGCGTTGGAGACTTGGGTTCGGGTTTTTTCGCTAGGTGCAAATGTTTTAACTTGCTTAAAATATCAGGTTTATTCTCGTTCCCAGTTATATAATCTTGAATGACACTTAATTTTCTTACTCCTTTTATTCCACGCTCTGGAAATCTGAAAGCATGATGGATACTTAAAATCAGAATTATGATGCCTCCTCGTCTACATTTACACTTTCAGATTCTAATTTAATTATTTCTAGACAATCAGTTGAACTTTTCTAATCAGCTGATACAGTTCTTGATCATTAACAAGAGTATATTTAATGACTACGTTCTATACGACATTAACTTTTGATCAATTTAGATCAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTCTCCATAAAAACAATTCAG</pcr_primer_p1>
		<pcr_primer_p2>TAAAACTGAACGAACAAGAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGTCTCCATAAAAACAATTCAGGATTGTGTGACGGTGTGAAAGGTTGTTTGTTTCCATTATTTCAAGTTTTTCTCTTTTTACGAGATACAGATATTGAAATATTCGTCGCAACCTATCCGTCACAAGGACAACAAGCTACGGATGACAATTATCTGATCTATGTGTGTGTTGTTCGTTCGGAGAGAATGGAAATAAAAAAGCGGCTAACATAGCCTTCCTTATCATTTCTTCTTGTTCGTTCAGTTTTA</canonical_amplicon>
		<polymorphic_amplicon>CAGTCTCCATAAAAACAATTCAGGATTGTGTGACGGTGTGAAAGGTTGTTTGTTTCCATTATTTCAAGTTTTTCTCTTTTTACGAGATACAGATATTGAAATATTCGTCGSAACCTATCCGTCACAAGGACAACAAGCTACGGATGACAATTATCTGATCTATGTGTGTGTTGTTCGTTCGGAGAGAATGGAAATAAAAAAGCGGCTAACATAGCCTTCCTTATCATTTCTTCTTGTTCGTTCAGTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25829</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>160432</contig_pos>
        <strand>+</strand>
        <context>AAAAATAACA[A/C]ACAGTAAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGACATGAAAGCTCCAACATACAGATTGTTGGTGAAACTGAAAAATAACA</left_flank>
        <right_flank>ACAGTAAAACCTTTATTAGAAGGGTCCTCCGAGATGGGCTTGTGAAAATA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAAAGGAAACCACTATCATCAATAACTCCACCATCTAACTTTATTTTCCCCTATCCAGATCACCAGATCTCCAGAATACTCCACGTGTATACGCTTTGAAATCTCTTCTTGCTTTTGGCTCTTTTTCGCTCTTCTCTTCTGTTTCTCATATCAATAATTTATTTTGAATGTGCATAAAATAAATAACAAAAAAAGAAATTAAAATGCATCCTAATCGAGATCAAACATTAATCACCGGAATGGATTGGACATTGGAAAAGAAGGGTCGATGAACAGAAAGAGGGAAAAGATAAAAGAGAAACTGTTTAATTTGATGGTTTTACACGACGGAAAACCGATTTTTTGGCCATTTTCTGGATGTTTTCATCGTCGATAGTTTGCGAAACAACCAGATGTACTATGTTGGACTGTTGAACATCGTATAGATTATTGAAGAACAGTACGAGAAGACATGAAAGCTCCAACATACAGATTGTTGGTGAAACTGAAAAATAACAAACAGTAAAACCTTTATTAGAAGGGTCCTCCGAGATGGGCTTGTGAAAATATAAAAGCCCCAGTAATAGAGGGGTTTTCCGTATGGTTTCAGTGAAATACATATATTCCGAAAATTTCAAAATTTCAAAACCATTGCTAAGCTCTCTTTTATAACTTGCAGTTTAGGTAAAATTCAGAGACCTTGGAACAAGAAGGGCCTCCCTTTCTAGCGTAAAACCTGTAATAGTAGGACCCCTCAACTTTTAACTTTGAGCCAATTTCTTTCGCCTCCTGTTGAAGATATTAAAAAGTTTTCAGCTGATAAATTTTTTATCATAATATCGAAAGTTTTTTGTCAGTTGACACATTTTTGATATCTTGTATAGAAGCCAGGAGAATTGAGCTCAAACTTGCCAGTGTGCGGGCCCTTCTCTTATAGGTTTTACGGTAATACAGGTTTTAGGGTGGTAGAGGCAAAGTCGCGAATAACTTACCAAAGGTGTCACACTGAACATTTTCTA</canonical>
            <polymorphic>TTCAAAGGAAACCACTATCATCAATAACTCCACCATCTAACTTTATTTTCCCCTATCCAGATCACCAGATCTCCAGAATACTCCACGTGTATACGCTTTGAAATCTCTTCTTGCTTTTGGCTCTTTTTCGCTCTTCTCTTCTGTTTCTCATATCAATAATTTATTTTGAATGTGCATAAAATAAATAACAAAAAAAGAAATTAAAATGCATCCTAATCGAGATCAAACATTAATCACCGGAATGGATTGGACATTGGAAAAGAAGGGTCGATGAACAGAAAGAGGGAAAAGATAAAAGAGAAACTGTTTAATTTGATGGTTTTACACGACGGAAAACCGATTTTTTGGCCATTTTCTGGATGTTTTCATCGTCGATAGTTTGCGAAACAACCAGATGTACTATGTTGGACTGTTGAACATCGTATAGATTATTGAAGAACAGTACGAGAAGACATGAAAGCTCCAACATACAGATTGTTGGTGAAACTGAAAAATAACAMACAGTAAAACCTTTATTAGAAGGGTCCTCCGAGATGGGCTTGTGAAAATATAAAAGCCCCAGTAATAGAGGGGTTTTCCGTATGGTTTCAGTGAAATACATATATTCCGAAAATTTCAAAATTTCAAAACCATTGCTAAGCTCTCTTTTATAACTTGCAGTTTAGGTAAAATTCAGAGACCTTGGAACAAGAAGGGCCTCCCTTTCTAGCGTAAAACCTGTAATAGTAGGACCCCTCAACTTTTAACTTTGAGCCAATTTCTTTCGCCTCCTGTTGAAGATATTAAAAAGTTTTCAGCTGATAAATTTTTTATCATAATATCGAAAGTTTTTTGTCAGTTGACACATTTTTGATATCTTGTATAGAAGCCAGGAGAATTGAGCTCAAACTTGCCAGTGTGCGGGCCCTTCTCTTATAGGTTTTACGGTAATACAGGTTTTAGGGTGGTAGAGGCAAAGTCGCGAATAACTTACCAAAGGTGTCACACTGAACATTTTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAGTACGAGAAGACATGAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCCAAGGTCTCTGAATTTTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACAGTACGAGAAGACATGAAAGCTCCAACATACAGATTGTTGGTGAAACTGAAAAATAACAAACAGTAAAACCTTTATTAGAAGGGTCCTCCGAGATGGGCTTGTGAAAATATAAAAGCCCCAGTAATAGAGGGGTTTTCCGTATGGTTTCAGTGAAATACATATATTCCGAAAATTTCAAAATTTCAAAACCATTGCTAAGCTCTCTTTTATAACTTGCAGTTTAGGTAAAATTCAGAGACCTTGGAA</canonical_amplicon>
		<polymorphic_amplicon>AACAGTACGAGAAGACATGAAAGCTCCAACATACAGATTGTTGGTGAAACTGAAAAATAACAMACAGTAAAACCTTTATTAGAAGGGTCCTCCGAGATGGGCTTGTGAAAATATAAAAGCCCCAGTAATAGAGGGGTTTTCCGTATGGTTTCAGTGAAATACATATATTCCGAAAATTTCAAAATTTCAAAACCATTGCTAAGCTCTCTTTTATAACTTGCAGTTTAGGTAAAATTCAGAGACCTTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25830</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>160476</contig_pos>
        <strand>+</strand>
        <context>ATGGGCTTGT[A/G]AMAATATAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAACAAACAGTAAAACCTTTATTAGAAGGGTCCTCCGAGATGGGCTTGT</left_flank>
        <right_flank>AAAATATAAAAGCCCCAGTAATAGAGGGGTTTTCCGTATGGTTTCAGTGA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTCCCCTATCCAGATCACCAGATCTCCAGAATACTCCACGTGTATACGCTTTGAAATCTCTTCTTGCTTTTGGCTCTTTTTCGCTCTTCTCTTCTGTTTCTCATATCAATAATTTATTTTGAATGTGCATAAAATAAATAACAAAAAAAGAAATTAAAATGCATCCTAATCGAGATCAAACATTAATCACCGGAATGGATTGGACATTGGAAAAGAAGGGTCGATGAACAGAAAGAGGGAAAAGATAAAAGAGAAACTGTTTAATTTGATGGTTTTACACGACGGAAAACCGATTTTTTGGCCATTTTCTGGATGTTTTCATCGTCGATAGTTTGCGAAACAACCAGATGTACTATGTTGGACTGTTGAACATCGTATAGATTATTGAAGAACAGTACGAGAAGACATGAAAGCTCCAACATACAGATTGTTGGTGAAACTGAAAAATAACAAACAGTAAAACCTTTATTAGAAGGGTCCTCCGAGATGGGCTTGTGAAAATATAAAAGCCCCAGTAATAGAGGGGTTTTCCGTATGGTTTCAGTGAAATACATATATTCCGAAAATTTCAAAATTTCAAAACCATTGCTAAGCTCTCTTTTATAACTTGCAGTTTAGGTAAAATTCAGAGACCTTGGAACAAGAAGGGCCTCCCTTTCTAGCGTAAAACCTGTAATAGTAGGACCCCTCAACTTTTAACTTTGAGCCAATTTCTTTCGCCTCCTGTTGAAGATATTAAAAAGTTTTCAGCTGATAAATTTTTTATCATAATATCGAAAGTTTTTTGTCAGTTGACACATTTTTGATATCTTGTATAGAAGCCAGGAGAATTGAGCTCAAACTTGCCAGTGTGCGGGCCCTTCTCTTATAGGTTTTACGGTAATACAGGTTTTAGGGTGGTAGAGGCAAAGTCGCGAATAACTTACCAAAGGTGTCACACTGAACATTTTCTATAAAATCTTGAACATTCGATGTCAAAGGAATATGTGCAATAATC</canonical>
            <polymorphic>ATTTTCCCCTATCCAGATCACCAGATCTCCAGAATACTCCACGTGTATACGCTTTGAAATCTCTTCTTGCTTTTGGCTCTTTTTCGCTCTTCTCTTCTGTTTCTCATATCAATAATTTATTTTGAATGTGCATAAAATAAATAACAAAAAAAGAAATTAAAATGCATCCTAATCGAGATCAAACATTAATCACCGGAATGGATTGGACATTGGAAAAGAAGGGTCGATGAACAGAAAGAGGGAAAAGATAAAAGAGAAACTGTTTAATTTGATGGTTTTACACGACGGAAAACCGATTTTTTGGCCATTTTCTGGATGTTTTCATCGTCGATAGTTTGCGAAACAACCAGATGTACTATGTTGGACTGTTGAACATCGTATAGATTATTGAAGAACAGTACGAGAAGACATGAAAGCTCCAACATACAGATTGTTGGTGAAACTGAAAAATAACAAACAGTAAAACCTTTATTAGAAGGGTCCTCCGAGATGGGCTTGTRAAAATATAAAAGCCCCAGTAATAGAGGGGTTTTCCGTATGGTTTCAGTGAAATACATATATTCCGAAAATTTCAAAATTTCAAAACCATTGCTAAGCTCTCTTTTATAACTTGCAGTTTAGGTAAAATTCAGAGACCTTGGAACAAGAAGGGCCTCCCTTTCTAGCGTAAAACCTGTAATAGTAGGACCCCTCAACTTTTAACTTTGAGCCAATTTCTTTCGCCTCCTGTTGAAGATATTAAAAAGTTTTCAGCTGATAAATTTTTTATCATAATATCGAAAGTTTTTTGTCAGTTGACACATTTTTGATATCTTGTATAGAAGCCAGGAGAATTGAGCTCAAACTTGCCAGTGTGCGGGCCCTTCTCTTATAGGTTTTACGGTAATACAGGTTTTAGGGTGGTAGAGGCAAAGTCGCGAATAACTTACCAAAGGTGTCACACTGAACATTTTCTATAAAATCTTGAACATTCGATGTCAAAGGAATATGTGCAATAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>251 157 90 85 62 61 54 50 49 46 35 21 20 8 4 3 2 2</canonical_bands>
                <polymorphic_bands>251 157 110 90 85 62 54 50 46 35 21 20 8 4 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAGTACGAGAAGACATGAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCCAAGGTCTCTGAATTTTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACAGTACGAGAAGACATGAAAGCTCCAACATACAGATTGTTGGTGAAACTGAAAAATAACAAACAGTAAAACCTTTATTAGAAGGGTCCTCCGAGATGGGCTTGTGAAAATATAAAAGCCCCAGTAATAGAGGGGTTTTCCGTATGGTTTCAGTGAAATACATATATTCCGAAAATTTCAAAATTTCAAAACCATTGCTAAGCTCTCTTTTATAACTTGCAGTTTAGGTAAAATTCAGAGACCTTGGAA</canonical_amplicon>
		<polymorphic_amplicon>AACAGTACGAGAAGACATGAAAGCTCCAACATACAGATTGTTGGTGAAACTGAAAAATAACAAACAGTAAAACCTTTATTAGAAGGGTCCTCCGAGATGGGCTTGTRAAAATATAAAAGCCCCAGTAATAGAGGGGTTTTCCGTATGGTTTCAGTGAAATACATATATTCCGAAAATTTCAAAATTTCAAAACCATTGCTAAGCTCTCTTTTATAACTTGCAGTTTAGGTAAAATTCAGAGACCTTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25831</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>160478</contig_pos>
        <strand>+</strand>
        <context>GGGCTTGTRA[A/C]AATATAAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACAAACAGTAAAACCTTTATTAGAAGGGTCCTCCGAGATGGGCTTGTGA</left_flank>
        <right_flank>AATATAAAAGCCCCAGTAATAGAGGGGTTTTCCGTATGGTTTCAGTGAAA</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCCCTATCCAGATCACCAGATCTCCAGAATACTCCACGTGTATACGCTTTGAAATCTCTTCTTGCTTTTGGCTCTTTTTCGCTCTTCTCTTCTGTTTCTCATATCAATAATTTATTTTGAATGTGCATAAAATAAATAACAAAAAAAGAAATTAAAATGCATCCTAATCGAGATCAAACATTAATCACCGGAATGGATTGGACATTGGAAAAGAAGGGTCGATGAACAGAAAGAGGGAAAAGATAAAAGAGAAACTGTTTAATTTGATGGTTTTACACGACGGAAAACCGATTTTTTGGCCATTTTCTGGATGTTTTCATCGTCGATAGTTTGCGAAACAACCAGATGTACTATGTTGGACTGTTGAACATCGTATAGATTATTGAAGAACAGTACGAGAAGACATGAAAGCTCCAACATACAGATTGTTGGTGAAACTGAAAAATAACAAACAGTAAAACCTTTATTAGAAGGGTCCTCCGAGATGGGCTTGTGAAAATATAAAAGCCCCAGTAATAGAGGGGTTTTCCGTATGGTTTCAGTGAAATACATATATTCCGAAAATTTCAAAATTTCAAAACCATTGCTAAGCTCTCTTTTATAACTTGCAGTTTAGGTAAAATTCAGAGACCTTGGAACAAGAAGGGCCTCCCTTTCTAGCGTAAAACCTGTAATAGTAGGACCCCTCAACTTTTAACTTTGAGCCAATTTCTTTCGCCTCCTGTTGAAGATATTAAAAAGTTTTCAGCTGATAAATTTTTTATCATAATATCGAAAGTTTTTTGTCAGTTGACACATTTTTGATATCTTGTATAGAAGCCAGGAGAATTGAGCTCAAACTTGCCAGTGTGCGGGCCCTTCTCTTATAGGTTTTACGGTAATACAGGTTTTAGGGTGGTAGAGGCAAAGTCGCGAATAACTTACCAAAGGTGTCACACTGAACATTTTCTATAAAATCTTGAACATTCGATGTCAAAGGAATATGTGCAATAATCAG</canonical>
            <polymorphic>TTTCCCCTATCCAGATCACCAGATCTCCAGAATACTCCACGTGTATACGCTTTGAAATCTCTTCTTGCTTTTGGCTCTTTTTCGCTCTTCTCTTCTGTTTCTCATATCAATAATTTATTTTGAATGTGCATAAAATAAATAACAAAAAAAGAAATTAAAATGCATCCTAATCGAGATCAAACATTAATCACCGGAATGGATTGGACATTGGAAAAGAAGGGTCGATGAACAGAAAGAGGGAAAAGATAAAAGAGAAACTGTTTAATTTGATGGTTTTACACGACGGAAAACCGATTTTTTGGCCATTTTCTGGATGTTTTCATCGTCGATAGTTTGCGAAACAACCAGATGTACTATGTTGGACTGTTGAACATCGTATAGATTATTGAAGAACAGTACGAGAAGACATGAAAGCTCCAACATACAGATTGTTGGTGAAACTGAAAAATAACAAACAGTAAAACCTTTATTAGAAGGGTCCTCCGAGATGGGCTTGTGAMAATATAAAAGCCCCAGTAATAGAGGGGTTTTCCGTATGGTTTCAGTGAAATACATATATTCCGAAAATTTCAAAATTTCAAAACCATTGCTAAGCTCTCTTTTATAACTTGCAGTTTAGGTAAAATTCAGAGACCTTGGAACAAGAAGGGCCTCCCTTTCTAGCGTAAAACCTGTAATAGTAGGACCCCTCAACTTTTAACTTTGAGCCAATTTCTTTCGCCTCCTGTTGAAGATATTAAAAAGTTTTCAGCTGATAAATTTTTTATCATAATATCGAAAGTTTTTTGTCAGTTGACACATTTTTGATATCTTGTATAGAAGCCAGGAGAATTGAGCTCAAACTTGCCAGTGTGCGGGCCCTTCTCTTATAGGTTTTACGGTAATACAGGTTTTAGGGTGGTAGAGGCAAAGTCGCGAATAACTTACCAAAGGTGTCACACTGAACATTTTCTATAAAATCTTGAACATTCGATGTCAAAGGAATATGTGCAATAATCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAGTACGAGAAGACATGAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCCAAGGTCTCTGAATTTTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACAGTACGAGAAGACATGAAAGCTCCAACATACAGATTGTTGGTGAAACTGAAAAATAACAAACAGTAAAACCTTTATTAGAAGGGTCCTCCGAGATGGGCTTGTGAAAATATAAAAGCCCCAGTAATAGAGGGGTTTTCCGTATGGTTTCAGTGAAATACATATATTCCGAAAATTTCAAAATTTCAAAACCATTGCTAAGCTCTCTTTTATAACTTGCAGTTTAGGTAAAATTCAGAGACCTTGGAA</canonical_amplicon>
		<polymorphic_amplicon>AACAGTACGAGAAGACATGAAAGCTCCAACATACAGATTGTTGGTGAAACTGAAAAATAACAAACAGTAAAACCTTTATTAGAAGGGTCCTCCGAGATGGGCTTGTGAMAATATAAAAGCCCCAGTAATAGAGGGGTTTTCCGTATGGTTTCAGTGAAATACATATATTCCGAAAATTTCAAAATTTCAAAACCATTGCTAAGCTCTCTTTTATAACTTGCAGTTTAGGTAAAATTCAGAGACCTTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25832</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>160500</contig_pos>
        <strand>+</strand>
        <context>CCCAGTAATA[G/T]AGGGGTTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGAAGGGTCCTCCGAGATGGGCTTGTGAAAATATAAAAGCCCCAGTAATA</left_flank>
        <right_flank>AGGGGTTTTCCGTATGGTTTCAGTGAAATACATATATTCCGAAAATTTCA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTCCAGAATACTCCACGTGTATACGCTTTGAAATCTCTTCTTGCTTTTGGCTCTTTTTCGCTCTTCTCTTCTGTTTCTCATATCAATAATTTATTTTGAATGTGCATAAAATAAATAACAAAAAAAGAAATTAAAATGCATCCTAATCGAGATCAAACATTAATCACCGGAATGGATTGGACATTGGAAAAGAAGGGTCGATGAACAGAAAGAGGGAAAAGATAAAAGAGAAACTGTTTAATTTGATGGTTTTACACGACGGAAAACCGATTTTTTGGCCATTTTCTGGATGTTTTCATCGTCGATAGTTTGCGAAACAACCAGATGTACTATGTTGGACTGTTGAACATCGTATAGATTATTGAAGAACAGTACGAGAAGACATGAAAGCTCCAACATACAGATTGTTGGTGAAACTGAAAAATAACAAACAGTAAAACCTTTATTAGAAGGGTCCTCCGAGATGGGCTTGTGAAAATATAAAAGCCCCAGTAATAGAGGGGTTTTCCGTATGGTTTCAGTGAAATACATATATTCCGAAAATTTCAAAATTTCAAAACCATTGCTAAGCTCTCTTTTATAACTTGCAGTTTAGGTAAAATTCAGAGACCTTGGAACAAGAAGGGCCTCCCTTTCTAGCGTAAAACCTGTAATAGTAGGACCCCTCAACTTTTAACTTTGAGCCAATTTCTTTCGCCTCCTGTTGAAGATATTAAAAAGTTTTCAGCTGATAAATTTTTTATCATAATATCGAAAGTTTTTTGTCAGTTGACACATTTTTGATATCTTGTATAGAAGCCAGGAGAATTGAGCTCAAACTTGCCAGTGTGCGGGCCCTTCTCTTATAGGTTTTACGGTAATACAGGTTTTAGGGTGGTAGAGGCAAAGTCGCGAATAACTTACCAAAGGTGTCACACTGAACATTTTCTATAAAATCTTGAACATTCGATGTCAAAGGAATATGTGCAATAATCAGAATAAATAATCCAAACGTTCTT</canonical>
            <polymorphic>ATCTCCAGAATACTCCACGTGTATACGCTTTGAAATCTCTTCTTGCTTTTGGCTCTTTTTCGCTCTTCTCTTCTGTTTCTCATATCAATAATTTATTTTGAATGTGCATAAAATAAATAACAAAAAAAGAAATTAAAATGCATCCTAATCGAGATCAAACATTAATCACCGGAATGGATTGGACATTGGAAAAGAAGGGTCGATGAACAGAAAGAGGGAAAAGATAAAAGAGAAACTGTTTAATTTGATGGTTTTACACGACGGAAAACCGATTTTTTGGCCATTTTCTGGATGTTTTCATCGTCGATAGTTTGCGAAACAACCAGATGTACTATGTTGGACTGTTGAACATCGTATAGATTATTGAAGAACAGTACGAGAAGACATGAAAGCTCCAACATACAGATTGTTGGTGAAACTGAAAAATAACAAACAGTAAAACCTTTATTAGAAGGGTCCTCCGAGATGGGCTTGTGAAAATATAAAAGCCCCAGTAATAKAGGGGTTTTCCGTATGGTTTCAGTGAAATACATATATTCCGAAAATTTCAAAATTTCAAAACCATTGCTAAGCTCTCTTTTATAACTTGCAGTTTAGGTAAAATTCAGAGACCTTGGAACAAGAAGGGCCTCCCTTTCTAGCGTAAAACCTGTAATAGTAGGACCCCTCAACTTTTAACTTTGAGCCAATTTCTTTCGCCTCCTGTTGAAGATATTAAAAAGTTTTCAGCTGATAAATTTTTTATCATAATATCGAAAGTTTTTTGTCAGTTGACACATTTTTGATATCTTGTATAGAAGCCAGGAGAATTGAGCTCAAACTTGCCAGTGTGCGGGCCCTTCTCTTATAGGTTTTACGGTAATACAGGTTTTAGGGTGGTAGAGGCAAAGTCGCGAATAACTTACCAAAGGTGTCACACTGAACATTTTCTATAAAATCTTGAACATTCGATGTCAAAGGAATATGTGCAATAATCAGAATAAATAATCCAAACGTTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAGTACGAGAAGACATGAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCCAAGGTCTCTGAATTTTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACAGTACGAGAAGACATGAAAGCTCCAACATACAGATTGTTGGTGAAACTGAAAAATAACAAACAGTAAAACCTTTATTAGAAGGGTCCTCCGAGATGGGCTTGTGAAAATATAAAAGCCCCAGTAATAGAGGGGTTTTCCGTATGGTTTCAGTGAAATACATATATTCCGAAAATTTCAAAATTTCAAAACCATTGCTAAGCTCTCTTTTATAACTTGCAGTTTAGGTAAAATTCAGAGACCTTGGAA</canonical_amplicon>
		<polymorphic_amplicon>AACAGTACGAGAAGACATGAAAGCTCCAACATACAGATTGTTGGTGAAACTGAAAAATAACAAACAGTAAAACCTTTATTAGAAGGGTCCTCCGAGATGGGCTTGTGAAAATATAAAAGCCCCAGTAATAKAGGGGTTTTCCGTATGGTTTCAGTGAAATACATATATTCCGAAAATTTCAAAATTTCAAAACCATTGCTAAGCTCTCTTTTATAACTTGCAGTTTAGGTAAAATTCAGAGACCTTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25833</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>160597</contig_pos>
        <strand>+</strand>
        <context>TTGCAGTTTA[A/G]GTAAAATTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAAAATTTCAAAACCATTGCTAAGCTCTCTTTTATAACTTGCAGTTTA</left_flank>
        <right_flank>GTAAAATTCAGAGACCTTGGAACAAGAAGGGCCTCCCTTTCTAGCGTAAA</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAATGTGCATAAAATAAATAACAAAAAAAGAAATTAAAATGCATCCTAATCGAGATCAAACATTAATCACCGGAATGGATTGGACATTGGAAAAGAAGGGTCGATGAACAGAAAGAGGGAAAAGATAAAAGAGAAACTGTTTAATTTGATGGTTTTACACGACGGAAAACCGATTTTTTGGCCATTTTCTGGATGTTTTCATCGTCGATAGTTTGCGAAACAACCAGATGTACTATGTTGGACTGTTGAACATCGTATAGATTATTGAAGAACAGTACGAGAAGACATGAAAGCTCCAACATACAGATTGTTGGTGAAACTGAAAAATAACAAACAGTAAAACCTTTATTAGAAGGGTCCTCCGAGATGGGCTTGTGAAAATATAAAAGCCCCAGTAATAGAGGGGTTTTCCGTATGGTTTCAGTGAAATACATATATTCCGAAAATTTCAAAATTTCAAAACCATTGCTAAGCTCTCTTTTATAACTTGCAGTTTAGGTAAAATTCAGAGACCTTGGAACAAGAAGGGCCTCCCTTTCTAGCGTAAAACCTGTAATAGTAGGACCCCTCAACTTTTAACTTTGAGCCAATTTCTTTCGCCTCCTGTTGAAGATATTAAAAAGTTTTCAGCTGATAAATTTTTTATCATAATATCGAAAGTTTTTTGTCAGTTGACACATTTTTGATATCTTGTATAGAAGCCAGGAGAATTGAGCTCAAACTTGCCAGTGTGCGGGCCCTTCTCTTATAGGTTTTACGGTAATACAGGTTTTAGGGTGGTAGAGGCAAAGTCGCGAATAACTTACCAAAGGTGTCACACTGAACATTTTCTATAAAATCTTGAACATTCGATGTCAAAGGAATATGTGCAATAATCAGAATAAATAATCCAAACGTTCTTATTATCGTTGACAACCCGATTTGCTGAAAAATAGAAAAACACGAATGATCTTCTTACAAATGAAAAGCTAACCTCTGTGAAATTTCTTAGCAAAAGT</canonical>
            <polymorphic>TTGAATGTGCATAAAATAAATAACAAAAAAAGAAATTAAAATGCATCCTAATCGAGATCAAACATTAATCACCGGAATGGATTGGACATTGGAAAAGAAGGGTCGATGAACAGAAAGAGGGAAAAGATAAAAGAGAAACTGTTTAATTTGATGGTTTTACACGACGGAAAACCGATTTTTTGGCCATTTTCTGGATGTTTTCATCGTCGATAGTTTGCGAAACAACCAGATGTACTATGTTGGACTGTTGAACATCGTATAGATTATTGAAGAACAGTACGAGAAGACATGAAAGCTCCAACATACAGATTGTTGGTGAAACTGAAAAATAACAAACAGTAAAACCTTTATTAGAAGGGTCCTCCGAGATGGGCTTGTGAAAATATAAAAGCCCCAGTAATAGAGGGGTTTTCCGTATGGTTTCAGTGAAATACATATATTCCGAAAATTTCAAAATTTCAAAACCATTGCTAAGCTCTCTTTTATAACTTGCAGTTTARGTAAAATTCAGAGACCTTGGAACAAGAAGGGCCTCCCTTTCTAGCGTAAAACCTGTAATAGTAGGACCCCTCAACTTTTAACTTTGAGCCAATTTCTTTCGCCTCCTGTTGAAGATATTAAAAAGTTTTCAGCTGATAAATTTTTTATCATAATATCGAAAGTTTTTTGTCAGTTGACACATTTTTGATATCTTGTATAGAAGCCAGGAGAATTGAGCTCAAACTTGCCAGTGTGCGGGCCCTTCTCTTATAGGTTTTACGGTAATACAGGTTTTAGGGTGGTAGAGGCAAAGTCGCGAATAACTTACCAAAGGTGTCACACTGAACATTTTCTATAAAATCTTGAACATTCGATGTCAAAGGAATATGTGCAATAATCAGAATAAATAATCCAAACGTTCTTATTATCGTTGACAACCCGATTTGCTGAAAAATAGAAAAACACGAATGATCTTCTTACAAATGAAAAGCTAACCTCTGTGAAATTTCTTAGCAAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAAAATTTCAAAACCATTG</pcr_primer_p1>
		<pcr_primer_p2>CTCTACCACCCTAAAACCTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>338</pcr_amplicon_size>
		<canonical_amplicon>TTCAAAATTTCAAAACCATTGCTAAGCTCTCTTTTATAACTTGCAGTTTAGGTAAAATTCAGAGACCTTGGAACAAGAAGGGCCTCCCTTTCTAGCGTAAAACCTGTAATAGTAGGACCCCTCAACTTTTAACTTTGAGCCAATTTCTTTCGCCTCCTGTTGAAGATATTAAAAAGTTTTCAGCTGATAAATTTTTTATCATAATATCGAAAGTTTTTTGTCAGTTGACACATTTTTGATATCTTGTATAGAAGCCAGGAGAATTGAGCTCAAACTTGCCAGTGTGCGGGCCCTTCTCTTATAGGTTTTACGGTAATACAGGTTTTAGGGTGGTAGAG</canonical_amplicon>
		<polymorphic_amplicon>TTCAAAATTTCAAAACCATTGCTAAGCTCTCTTTTATAACTTGCAGTTTARGTAAAATTCAGAGACCTTGGAACAAGAAGGGCCTCCCTTTCTAGCGTAAAACCTGTAATAGTAGGACCCCTCAACTTTTAACTTTGAGCCAATTTCTTTCGCCTCCTGTTGAAGATATTAAAAAGTTTTCAGCTGATAAATTTTTTATCATAATATCGAAAGTTTTTTGTCAGTTGACACATTTTTGATATCTTGTATAGAAGCCAGGAGAATTGAGCTCAAACTTGCCAGTGTGCGGGCCCTTCTCTTATAGGTTTTACGGTAATACAGGTTTTAGGGTGGTAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25834</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>162115</contig_pos>
        <strand></strand>
        <context>aggacccccc[G/T]aattttcagc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTAATCGAAAATTTTGGATTACTGTGGGATCCGTAATAGAAGGACCCCCC</left_flank>
        <right_flank>AATTTTCAGCTTTGAGCCTATTTATCTCGATCCCTGTCAAAGATATAAAA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAGCCCTTTAACAAAACACATCCAAGCTATCCTTATCATTTTCTATCGTTTTTCTCATATCTATTCTATTGCCGAAATGTGAAGCATCACGGCTTATCTATGATCTCAACAATAGCCTATTCATCATCCCCAATATTGTCTAATTCTTGTTTTCTCACCTGGACGCTAGCGAATAATTGTGTGGAGCGATATATGGATGTTGTCCATCCATTTATAAGTGGTACCTTACGAGGCTGAAATTGAACAAAAAAAGTTAGATAGGAAATATAAAGCATACTTACATTACAGAAATTGTGATCATTCATACCAAATATGTAGGAACTCTGATTGTTCACATACAAATTGACCCACCATGAACCAAGATTCCATTTTGTGTTATTTTTCCAAGGAATCCATATTTGTCCGTTTCCTGTTTCATTCCACTGAAAATTGATTATTTGGAAGAACAGTAATCGAAAATTTTGGATTACTGTGGGATCCGTAATAGAAGGACCCCCCGAATTTTCAGCTTTGAGCCTATTTATCTCGATCCCTGTCAAAGATATAAAAAGAGTTGTCAGCTAGTAAATTGTTCAACACAACGTTACGAACATTTTATCAGTTGACACATTTTCGATATTTTGCATTGGAGTCAATAAAAATTTGCAAGAACTAGACAGTGTGGGGGATCTTCTATTACAAGTTTTACAGTATTCTTTTTCTTTTTCATTGAGAAGGTTACCTGAAAGTTGGATCTAATGTATTGAGTCATATTTGGTTGATTATCATATTTGGTATGATGTGGATGAGCAGCAACCCATAATCCAATTAAAAACAATGAAAATGGAACCATCCCAAAAACGATAAGTGCAAAACGAAGAGTCATATGAATGTGAGCAAGCTCTTCTTCATCTTCTGGAGCTCGATACGGATGATCTTTCCGATGGCTTTGTCGTAGATGCTTGTGTATTGTCATGCCTAATAAAAATCAAAGGATTAGAGGAACAGTTTATTTCTGGA</canonical>
            <polymorphic>TTAGCCCTTTAACAAAACACATCCAAGCTATCCTTATCATTTTCTATCGTTTTTCTCATATCTATTCTATTGCCGAAATGTGAAGCATCACGGCTTATCTATGATCTCAACAATAGCCTATTCATCATCCCCAATATTGTCTAATTCTTGTTTTCTCACCTGGACGCTAGCGAATAATTGTGTGGAGCGATATATGGATGTTGTCCATCCATTTATAAGTGGTACCTTACGAGGCTGAAATTGAACAAAAAAAGTTAGATAGGAAATATAAAGCATACTTACATTACAGAAATTGTGATCATTCATACCAAATATGTAGGAACTCTGATTGTTCACATACAAATTGACCCACCATGAACCAAGATTCCATTTTGTGTTATTTTTCCAAGGAATCCATATTTGTCCGTTTCCTGTTTCATTCCACTGAAAATTGATTATTTGGAAGAACAGTAATCGAAAATTTTGGATTACTGTGGGATCCGTAATAGAAGGACCCCCCKAATTTTCAGCTTTGAGCCTATTTATCTCGATCCCTGTCAAAGATATAAAAAGAGTTGTCAGCTAGTAAATTGTTCAACACAACGTTACGAACATTTTATCAGTTGACACATTTTCGATATTTTGCATTGGAGTCAATAAAAATTTGCAAGAACTAGACAGTGTGGGGGATCTTCTATTACAAGTTTTACAGTATTCTTTTTCTTTTTCATTGAGAAGGTTACCTGAAAGTTGGATCTAATGTATTGAGTCATATTTGGTTGATTATCATATTTGGTATGATGTGGATGAGCAGCAACCCATAATCCAATTAAAAACAATGAAAATGGAACCATCCCAAAAACGATAAGTGCAAAACGAAGAGTCATATGAATGTGAGCAAGCTCTTCTTCATCTTCTGGAGCTCGATACGGATGATCTTTCCGATGGCTTTGTCGTAGATGCTTGTGTATTGTCATGCCTAATAAAAATCAAAGGATTAGAGGAACAGTTTATTTCTGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>458 360 140 42</canonical_bands>
                <polymorphic_bands>458 360 182</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTGATTATTTGGAAGAACAG</pcr_primer_p1>
		<pcr_primer_p2>AACTTTCAGGTAACCTTCTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>304</pcr_amplicon_size>
		<canonical_amplicon>AAATTGATTATTTGGAAGAACAGTAATCGAAAATTTTGGATTACTGTGGGATCCGTAATAGAAGGACCCCCCGAATTTTCAGCTTTGAGCCTATTTATCTCGATCCCTGTCAAAGATATAAAAAGAGTTGTCAGCTAGTAAATTGTTCAACACAACGTTACGAACATTTTATCAGTTGACACATTTTCGATATTTTGCATTGGAGTCAATAAAAATTTGCAAGAACTAGACAGTGTGGGGGATCTTCTATTACAAGTTTTACAGTATTCTTTTTCTTTTTCATTGAGAAGGTTACCTGAAAGTT</canonical_amplicon>
		<polymorphic_amplicon>AAATTGATTATTTGGAAGAACAGTAATCGAAAATTTTGGATTACTGTGGGATCCGTAATAGAAGGACCCCCCKAATTTTCAGCTTTGAGCCTATTTATCTCGATCCCTGTCAAAGATATAAAAAGAGTTGTCAGCTAGTAAATTGTTCAACACAACGTTACGAACATTTTATCAGTTGACACATTTTCGATATTTTGCATTGGAGTCAATAAAAATTTGCAAGAACTAGACAGTGTGGGGGATCTTCTATTACAAGTTTTACAGTATTCTTTTTCTTTTTCATTGAGAAGGTTACCTGAAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25835</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>162179</contig_pos>
        <strand></strand>
        <context>gttgtcagct[A/G]gtaaattgtt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGCCTATTTATCTCGATCCCTGTCAAAGATATAAAAAGAGTTGTCAGCT</left_flank>
        <right_flank>GTAAATTGTTCAACACAACGTTACGAACATTTTATCAGTTGACACATTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTATTGCCGAAATGTGAAGCATCACGGCTTATCTATGATCTCAACAATAGCCTATTCATCATCCCCAATATTGTCTAATTCTTGTTTTCTCACCTGGACGCTAGCGAATAATTGTGTGGAGCGATATATGGATGTTGTCCATCCATTTATAAGTGGTACCTTACGAGGCTGAAATTGAACAAAAAAAGTTAGATAGGAAATATAAAGCATACTTACATTACAGAAATTGTGATCATTCATACCAAATATGTAGGAACTCTGATTGTTCACATACAAATTGACCCACCATGAACCAAGATTCCATTTTGTGTTATTTTTCCAAGGAATCCATATTTGTCCGTTTCCTGTTTCATTCCACTGAAAATTGATTATTTGGAAGAACAGTAATCGAAAATTTTGGATTACTGTGGGATCCGTAATAGAAGGACCCCCCGAATTTTCAGCTTTGAGCCTATTTATCTCGATCCCTGTCAAAGATATAAAAAGAGTTGTCAGCTAGTAAATTGTTCAACACAACGTTACGAACATTTTATCAGTTGACACATTTTCGATATTTTGCATTGGAGTCAATAAAAATTTGCAAGAACTAGACAGTGTGGGGGATCTTCTATTACAAGTTTTACAGTATTCTTTTTCTTTTTCATTGAGAAGGTTACCTGAAAGTTGGATCTAATGTATTGAGTCATATTTGGTTGATTATCATATTTGGTATGATGTGGATGAGCAGCAACCCATAATCCAATTAAAAACAATGAAAATGGAACCATCCCAAAAACGATAAGTGCAAAACGAAGAGTCATATGAATGTGAGCAAGCTCTTCTTCATCTTCTGGAGCTCGATACGGATGATCTTTCCGATGGCTTTGTCGTAGATGCTTGTGTATTGTCATGCCTAATAAAAATCAAAGGATTAGAGGAACAGTTTATTTCTGGAACAGTTTTATTTGAAAGAAAAACAGGAACATGATATAGTTGATATGTTTCACAGAGACACCTAA</canonical>
            <polymorphic>TTCTATTGCCGAAATGTGAAGCATCACGGCTTATCTATGATCTCAACAATAGCCTATTCATCATCCCCAATATTGTCTAATTCTTGTTTTCTCACCTGGACGCTAGCGAATAATTGTGTGGAGCGATATATGGATGTTGTCCATCCATTTATAAGTGGTACCTTACGAGGCTGAAATTGAACAAAAAAAGTTAGATAGGAAATATAAAGCATACTTACATTACAGAAATTGTGATCATTCATACCAAATATGTAGGAACTCTGATTGTTCACATACAAATTGACCCACCATGAACCAAGATTCCATTTTGTGTTATTTTTCCAAGGAATCCATATTTGTCCGTTTCCTGTTTCATTCCACTGAAAATTGATTATTTGGAAGAACAGTAATCGAAAATTTTGGATTACTGTGGGATCCGTAATAGAAGGACCCCCCGAATTTTCAGCTTTGAGCCTATTTATCTCGATCCCTGTCAAAGATATAAAAAGAGTTGTCAGCTRGTAAATTGTTCAACACAACGTTACGAACATTTTATCAGTTGACACATTTTCGATATTTTGCATTGGAGTCAATAAAAATTTGCAAGAACTAGACAGTGTGGGGGATCTTCTATTACAAGTTTTACAGTATTCTTTTTCTTTTTCATTGAGAAGGTTACCTGAAAGTTGGATCTAATGTATTGAGTCATATTTGGTTGATTATCATATTTGGTATGATGTGGATGAGCAGCAACCCATAATCCAATTAAAAACAATGAAAATGGAACCATCCCAAAAACGATAAGTGCAAAACGAAGAGTCATATGAATGTGAGCAAGCTCTTCTTCATCTTCTGGAGCTCGATACGGATGATCTTTCCGATGGCTTTGTCGTAGATGCTTGTGTATTGTCATGCCTAATAAAAATCAAAGGATTAGAGGAACAGTTTATTTCTGGAACAGTTTTATTTGAAAGAAAAACAGGAACATGATATAGTTGATATGTTTCACAGAGACACCTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>411 395 103 91</canonical_bands>
                <polymorphic_bands>486 411 103</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTGATTATTTGGAAGAACAG</pcr_primer_p1>
		<pcr_primer_p2>AACTTTCAGGTAACCTTCTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>304</pcr_amplicon_size>
		<canonical_amplicon>AAATTGATTATTTGGAAGAACAGTAATCGAAAATTTTGGATTACTGTGGGATCCGTAATAGAAGGACCCCCCGAATTTTCAGCTTTGAGCCTATTTATCTCGATCCCTGTCAAAGATATAAAAAGAGTTGTCAGCTAGTAAATTGTTCAACACAACGTTACGAACATTTTATCAGTTGACACATTTTCGATATTTTGCATTGGAGTCAATAAAAATTTGCAAGAACTAGACAGTGTGGGGGATCTTCTATTACAAGTTTTACAGTATTCTTTTTCTTTTTCATTGAGAAGGTTACCTGAAAGTT</canonical_amplicon>
		<polymorphic_amplicon>AAATTGATTATTTGGAAGAACAGTAATCGAAAATTTTGGATTACTGTGGGATCCGTAATAGAAGGACCCCCCGAATTTTCAGCTTTGAGCCTATTTATCTCGATCCCTGTCAAAGATATAAAAAGAGTTGTCAGCTRGTAAATTGTTCAACACAACGTTACGAACATTTTATCAGTTGACACATTTTCGATATTTTGCATTGGAGTCAATAAAAATTTGCAAGAACTAGACAGTGTGGGGGATCTTCTATTACAAGTTTTACAGTATTCTTTTTCTTTTTCATTGAGAAGGTTACCTGAAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25836</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>172744</contig_pos>
        <strand></strand>
        <context>TAGAATATTC[G/A]AAAAAGAAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTATCCTTATATGTCTCTTCTATTTTATTACTGTGTCGCATAGAATATTC</left_flank>
        <right_flank>AAAAAGAAGTTTCATTGGATTTTCGAAATGTATCAAATCGACCCCGTCAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAAATATCATTACAAAAAAAAAACAGAAAACATATGATGAACTGCTGAAACTGAACTAATATTCAAATACAACTGTTGAAACGGAGAGAATGTTGTTGTATTGGAATTTGGTCTCGCCTTCGAATGTTTGCTGAAATGATAGTCGGGATTATGTTTTCACAAACAGCTTCAGAAAACTTGAAAAACATAAATGTTTAACAATAAGAGGCAAAATATTCGATCTAAAAAACCAAAGTAAAATTTTGAAAATTTGAAAATCCAATAATCCTATTTTGAAGGGATAATCGTTTTAGAACTTGTCGTCTATTCTCTTCTAGTCACAAAACGTTTCGATTCTTCATTTCAACTTCAAAATGCGCCGTCGTCGCGCTATTGTTCATGTGGGCCAGGTAAAATGGTTCTAATCCCATTTGTAATCATCCAAAAGTTTTCAGATCATTCTTGTAACTATCCTTATATGTCTCTTCTATTTTATTACTGTGTCGCATAGAATATTCGAAAAAGAAGTTTCATTGGATTTTCGAAATGTATCAAATCGACCCCGTCAAGCACATTTATTTGATAACAAGTGTAGGTTTGCATGGACAGAGCCAATGGATAACACATTGAAAGTACAATTGGATTTTATAAAACCAAAAAGACATATTCATTCTACAGAAGCGTCTAAAATTTCCAAAACGATCTGGATGTGAAAAGTACAATATTGATCTTTTCAAACGATATCCTGCCACTGGAGAATTTTCGATGAAGTCAAAAGCGTACAAAAACAAGTTGGAATGTGTTGCACAGGTTTTGAAGGGCGGATTAAGACCAGAAGCGCATTCTTATCAACTTGGGAAATCTCAGAATGTTTATTTCTTTTTTATACCTCTTTACAACTTCACATAATTTTAGTTCTCTCCAAAAATTAACAAGAGATTCTGGATCAACGCGAACAATTTCATGATAACTTGTTTTTCTGGACAGTTGGTCATTTATCGGAAACAGTTTATGGGATT</canonical>
            <polymorphic>TAAAAATATCATTACAAAAAAAAAACAGAAAACATATGATGAACTGCTGAAACTGAACTAATATTCAAATACAACTGTTGAAACGGAGAGAATGTTGTTGTATTGGAATTTGGTCTCGCCTTCGAATGTTTGCTGAAATGATAGTCGGGATTATGTTTTCACAAACAGCTTCAGAAAACTTGAAAAACATAAATGTTTAACAATAAGAGGCAAAATATTCGATCTAAAAAACCAAAGTAAAATTTTGAAAATTTGAAAATCCAATAATCCTATTTTGAAGGGATAATCGTTTTAGAACTTGTCGTCTATTCTCTTCTAGTCACAAAACGTTTCGATTCTTCATTTCAACTTCAAAATGCGCCGTCGTCGCGCTATTGTTCATGTGGGCCAGGTAAAATGGTTCTAATCCCATTTGTAATCATCCAAAAGTTTTCAGATCATTCTTGTAACTATCCTTATATGTCTCTTCTATTTTATTACTGTGTCGCATAGAATATTCRAAAAAGAAGTTTCATTGGATTTTCGAAATGTATCAAATCGACCCCGTCAAGCACATTTATTTGATAACAAGTGTAGGTTTGCATGGACAGAGCCAATGGATAACACATTGAAAGTACAATTGGATTTTATAAAACCAAAAAGACATATTCATTCTACAGAAGCGTCTAAAATTTCCAAAACGATCTGGATGTGAAAAGTACAATATTGATCTTTTCAAACGATATCCTGCCACTGGAGAATTTTCGATGAAGTCAAAAGCGTACAAAAACAAGTTGGAATGTGTTGCACAGGTTTTGAAGGGCGGATTAAGACCAGAAGCGCATTCTTATCAACTTGGGAAATCTCAGAATGTTTATTTCTTTTTTATACCTCTTTACAACTTCACATAATTTTAGTTCTCTCCAAAAATTAACAAGAGATTCTGGATCAACGCGAACAATTTCATGATAACTTGTTTTTCTGGACAGTTGGTCATTTATCGGAAACAGTTTATGGGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>477 376 122 25</canonical_bands>
                <polymorphic_bands>477 401 122</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>255 206 166 123 113 97 25 15</canonical_bands>
                <polymorphic_bands>255 206 191 123 113 97 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATCCAAAAGTTTTCAGATCAT</pcr_primer_p1>
		<pcr_primer_p2>TTAGACGCTTCTGTAGAATGAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATCCAAAAGTTTTCAGATCATTCTTGTAACTATCCTTATATGTCTCTTCTATTTTATTACTGTGTCGCATAGAATATTCGAAAAAGAAGTTTCATTGGATTTTCGAAATGTATCAAATCGACCCCGTCAAGCACATTTATTTGATAACAAGTGTAGGTTTGCATGGACAGAGCCAATGGATAACACATTGAAAGTACAATTGGATTTTATAAAACCAAAAAGACATATTCATTCTACAGAAGCGTCTAA</canonical_amplicon>
		<polymorphic_amplicon>CATCCAAAAGTTTTCAGATCATTCTTGTAACTATCCTTATATGTCTCTTCTATTTTATTACTGTGTCGCATAGAATATTCRAAAAAGAAGTTTCATTGGATTTTCGAAATGTATCAAATCGACCCCGTCAAGCACATTTATTTGATAACAAGTGTAGGTTTGCATGGACAGAGCCAATGGATAACACATTGAAAGTACAATTGGATTTTATAAAACCAAAAAGACATATTCATTCTACAGAAGCGTCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25837</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>172866</contig_pos>
        <strand></strand>
        <context>AAGTACAATT[G/A]GATTTTATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGTAGGTTTGCATGGACAGAGCCAATGGATAACACATTGAAAGTACAATT</left_flank>
        <right_flank>GATTTTATAAAACCAAAAAGACATATTCATTCTACAGAAGCGTCTAAAAT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAATGTTTGCTGAAATGATAGTCGGGATTATGTTTTCACAAACAGCTTCAGAAAACTTGAAAAACATAAATGTTTAACAATAAGAGGCAAAATATTCGATCTAAAAAACCAAAGTAAAATTTTGAAAATTTGAAAATCCAATAATCCTATTTTGAAGGGATAATCGTTTTAGAACTTGTCGTCTATTCTCTTCTAGTCACAAAACGTTTCGATTCTTCATTTCAACTTCAAAATGCGCCGTCGTCGCGCTATTGTTCATGTGGGCCAGGTAAAATGGTTCTAATCCCATTTGTAATCATCCAAAAGTTTTCAGATCATTCTTGTAACTATCCTTATATGTCTCTTCTATTTTATTACTGTGTCGCATAGAATATTCGAAAAAGAAGTTTCATTGGATTTTCGAAATGTATCAAATCGACCCCGTCAAGCACATTTATTTGATAACAAGTGTAGGTTTGCATGGACAGAGCCAATGGATAACACATTGAAAGTACAATTGGATTTTATAAAACCAAAAAGACATATTCATTCTACAGAAGCGTCTAAAATTTCCAAAACGATCTGGATGTGAAAAGTACAATATTGATCTTTTCAAACGATATCCTGCCACTGGAGAATTTTCGATGAAGTCAAAAGCGTACAAAAACAAGTTGGAATGTGTTGCACAGGTTTTGAAGGGCGGATTAAGACCAGAAGCGCATTCTTATCAACTTGGGAAATCTCAGAATGTTTATTTCTTTTTTATACCTCTTTACAACTTCACATAATTTTAGTTCTCTCCAAAAATTAACAAGAGATTCTGGATCAACGCGAACAATTTCATGATAACTTGTTTTTCTGGACAGTTGGTCATTTATCGGAAACAGTTTATGGGATTCAAAATGAACGAAAATCAAAAATTAGTTGTTGATGGATCGTTTCAAATCCCATATCCTGATCCGAAACTTCAGAAGCATCAATCCAAACAGTTTTCTATTTCGATCCTCGGATTGGACTCAA</canonical>
            <polymorphic>CGAATGTTTGCTGAAATGATAGTCGGGATTATGTTTTCACAAACAGCTTCAGAAAACTTGAAAAACATAAATGTTTAACAATAAGAGGCAAAATATTCGATCTAAAAAACCAAAGTAAAATTTTGAAAATTTGAAAATCCAATAATCCTATTTTGAAGGGATAATCGTTTTAGAACTTGTCGTCTATTCTCTTCTAGTCACAAAACGTTTCGATTCTTCATTTCAACTTCAAAATGCGCCGTCGTCGCGCTATTGTTCATGTGGGCCAGGTAAAATGGTTCTAATCCCATTTGTAATCATCCAAAAGTTTTCAGATCATTCTTGTAACTATCCTTATATGTCTCTTCTATTTTATTACTGTGTCGCATAGAATATTCGAAAAAGAAGTTTCATTGGATTTTCGAAATGTATCAAATCGACCCCGTCAAGCACATTTATTTGATAACAAGTGTAGGTTTGCATGGACAGAGCCAATGGATAACACATTGAAAGTACAATTRGATTTTATAAAACCAAAAAGACATATTCATTCTACAGAAGCGTCTAAAATTTCCAAAACGATCTGGATGTGAAAAGTACAATATTGATCTTTTCAAACGATATCCTGCCACTGGAGAATTTTCGATGAAGTCAAAAGCGTACAAAAACAAGTTGGAATGTGTTGCACAGGTTTTGAAGGGCGGATTAAGACCAGAAGCGCATTCTTATCAACTTGGGAAATCTCAGAATGTTTATTTCTTTTTTATACCTCTTTACAACTTCACATAATTTTAGTTCTCTCCAAAAATTAACAAGAGATTCTGGATCAACGCGAACAATTTCATGATAACTTGTTTTTCTGGACAGTTGGTCATTTATCGGAAACAGTTTATGGGATTCAAAATGAACGAAAATCAAAAATTAGTTGTTGATGGATCGTTTCAAATCCCATATCCTGATCCGAAACTTCAGAAGCATCAATCCAAACAGTTTTCTATTTCGATCCTCGGATTGGACTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTCAAGCACATTTATTTGATA</pcr_primer_p1>
		<pcr_primer_p2>CACATTCCAACTTGTTTTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CGTCAAGCACATTTATTTGATAACAAGTGTAGGTTTGCATGGACAGAGCCAATGGATAACACATTGAAAGTACAATTGGATTTTATAAAACCAAAAAGACATATTCATTCTACAGAAGCGTCTAAAATTTCCAAAACGATCTGGATGTGAAAAGTACAATATTGATCTTTTCAAACGATATCCTGCCACTGGAGAATTTTCGATGAAGTCAAAAGCGTACAAAAACAAGTTGGAATGTG</canonical_amplicon>
		<polymorphic_amplicon>CGTCAAGCACATTTATTTGATAACAAGTGTAGGTTTGCATGGACAGAGCCAATGGATAACACATTGAAAGTACAATTRGATTTTATAAAACCAAAAAGACATATTCATTCTACAGAAGCGTCTAAAATTTCCAAAACGATCTGGATGTGAAAAGTACAATATTGATCTTTTCAAACGATATCCTGCCACTGGAGAATTTTCGATGAAGTCAAAAGCGTACAAAAACAAGTTGGAATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25838</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>226696</contig_pos>
        <strand>+</strand>
        <context>TCGAGAAAGT[C/T]RGCGGAAACG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAGGAGGTGACTATATTGTCGTCGAAGCCAAAATGGAACTCGAGAAAGT</left_flank>
        <right_flank>GGCGGAAACGAGGTTTTCCTTCGTGGAGATGTGATGCACATCTGGAAGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCATTGGAGCTTAAGAAGATTTTGGCTCCGTACTTTGAAGGTTTCAATCGTACCACTGAGGTTGCTGATGCTGAAGGATCCATGAAATTCATGCATCCACAGGGAGTTATTGTCCAGAGAGACACTACGTCGATTTTTGGAAAGGAAGGTAGGTTTATGGCTTTCTTATCTTTCTCTATCGGAGGCAAAAACGCCCACAATGTTGCCAAATTTCGAATATTCTTATCAATTGGGAATTCATTTCCGTTTTTTCAGCGCTCACCGATCTCTTCAAAAGATGGTATGACTTCACCGGACCGTACTACTTTAACGTGAGTTGAGATGATAGAGGAAATATAAGTTACGACTAACTCACGAGATGGGAGCAGGCGTGAAAAGAGGAATTTGGAAGTTATAAAAAAACCAATAGTGGAGAATTAATTTTAGCGCTACAACGAGAAATACAGTGGAGGAGGTGACTATATTGTCGTCGAAGCCAAAATGGAACTCGAGAAAGTCGGCGGAAACGAGGTTTTCCTTCGTGGAGATGTGATGCACATCTGGAAGAAAGAGCAAGACAAATGGCTCATGTTCTACGAGCAATACCACGTTGAAAACTGAAACTGGAAGCAAAGATGATACGTGATTTCACATGACACTTTTTTCTTATCTCTGTCTCCTCTTTTTGATATCAAGTACTCATGAATTTTGATCAATGAATAAATGTATTTATTGTATTAAACTGTGTTCTGATTGAATTCAAATACCAAACTTCACAATTTTAGTCAATATTTATTATTTAGTTTCCGATTTATTTCAGCATGGCGATCCATAGATATTGTGAGGTATCATCATCTGGAATACCATTTTTCTTTCACTTCAGAATGTTTCAGATGGATGGGCCGTAAAATGATTTATTCCGGGTTGTGAGGGCAACAAAATGGGGAGTAAGAGTAACAAAAATTCATTCAAGGGTCATATTACGGTAGTCGGTTAGGATTACTGTCGGCGGGTTCTTA</canonical>
            <polymorphic>ATCCATTGGAGCTTAAGAAGATTTTGGCTCCGTACTTTGAAGGTTTCAATCGTACCACTGAGGTTGCTGATGCTGAAGGATCCATGAAATTCATGCATCCACAGGGAGTTATTGTCCAGAGAGACACTACGTCGATTTTTGGAAAGGAAGGTAGGTTTATGGCTTTCTTATCTTTCTCTATCGGAGGCAAAAACGCCCACAATGTTGCCAAATTTCGAATATTCTTATCAATTGGGAATTCATTTCCGTTTTTTCAGCGCTCACCGATCTCTTCAAAAGATGGTATGACTTCACCGGACCGTACTACTTTAACGTGAGTTGAGATGATAGAGGAAATATAAGTTACGACTAACTCACGAGATGGGAGCAGGCGTGAAAAGAGGAATTTGGAAGTTATAAAAAAACCAATAGTGGAGAATTAATTTTAGCGCTACAACGAGAAATACAGTGGAGGAGGTGACTATATTGTCGTCGAAGCCAAAATGGAACTCGAGAAAGTYGGCGGAAACGAGGTTTTCCTTCGTGGAGATGTGATGCACATCTGGAAGAAAGAGCAAGACAAATGGCTCATGTTCTACGAGCAATACCACGTTGAAAACTGAAACTGGAAGCAAAGATGATACGTGATTTCACATGACACTTTTTTCTTATCTCTGTCTCCTCTTTTTGATATCAAGTACTCATGAATTTTGATCAATGAATAAATGTATTTATTGTATTAAACTGTGTTCTGATTGAATTCAAATACCAAACTTCACAATTTTAGTCAATATTTATTATTTAGTTTCCGATTTATTTCAGCATGGCGATCCATAGATATTGTGAGGTATCATCATCTGGAATACCATTTTTCTTTCACTTCAGAATGTTTCAGATGGATGGGCCGTAAAATGATTTATTCCGGGTTGTGAGGGCAACAAAATGGGGAGTAAGAGTAACAAAAATTCATTCAAGGGTCATATTACGGTAGTCGGTTAGGATTACTGTCGGCGGGTTCTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTACGACTAACTCACGAGATG</pcr_primer_p1>
		<pcr_primer_p2>GGTATTGCTCGTAGAACATGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGTTACGACTAACTCACGAGATGGGAGCAGGCGTGAAAAGAGGAATTTGGAAGTTATAAAAAAACCAATAGTGGAGAATTAATTTTAGCGCTACAACGAGAAATACAGTGGAGGAGGTGACTATATTGTCGTCGAAGCCAAAATGGAACTCGAGAAAGTCGGCGGAAACGAGGTTTTCCTTCGTGGAGATGTGATGCACATCTGGAAGAAAGAGCAAGACAAATGGCTCATGTTCTACGAGCAATACC</canonical_amplicon>
		<polymorphic_amplicon>AGTTACGACTAACTCACGAGATGGGAGCAGGCGTGAAAAGAGGAATTTGGAAGTTATAAAAAAACCAATAGTGGAGAATTAATTTTAGCGCTACAACGAGAAATACAGTGGAGGAGGTGACTATATTGTCGTCGAAGCCAAAATGGAACTCGAGAAAGTYGGCGGAAACGAGGTTTTCCTTCGTGGAGATGTGATGCACATCTGGAAGAAAGAGCAAGACAAATGGCTCATGTTCTACGAGCAATACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25839</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>226697</contig_pos>
        <strand>+</strand>
        <context>CGAGAAAGTY[A/G]GCGGAAACGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGGAGGTGACTATATTGTCGTCGAAGCCAAAATGGAACTCGAGAAAGTC</left_flank>
        <right_flank>GCGGAAACGAGGTTTTCCTTCGTGGAGATGTGATGCACATCTGGAAGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCATTGGAGCTTAAGAAGATTTTGGCTCCGTACTTTGAAGGTTTCAATCGTACCACTGAGGTTGCTGATGCTGAAGGATCCATGAAATTCATGCATCCACAGGGAGTTATTGTCCAGAGAGACACTACGTCGATTTTTGGAAAGGAAGGTAGGTTTATGGCTTTCTTATCTTTCTCTATCGGAGGCAAAAACGCCCACAATGTTGCCAAATTTCGAATATTCTTATCAATTGGGAATTCATTTCCGTTTTTTCAGCGCTCACCGATCTCTTCAAAAGATGGTATGACTTCACCGGACCGTACTACTTTAACGTGAGTTGAGATGATAGAGGAAATATAAGTTACGACTAACTCACGAGATGGGAGCAGGCGTGAAAAGAGGAATTTGGAAGTTATAAAAAAACCAATAGTGGAGAATTAATTTTAGCGCTACAACGAGAAATACAGTGGAGGAGGTGACTATATTGTCGTCGAAGCCAAAATGGAACTCGAGAAAGTCGGCGGAAACGAGGTTTTCCTTCGTGGAGATGTGATGCACATCTGGAAGAAAGAGCAAGACAAATGGCTCATGTTCTACGAGCAATACCACGTTGAAAACTGAAACTGGAAGCAAAGATGATACGTGATTTCACATGACACTTTTTTCTTATCTCTGTCTCCTCTTTTTGATATCAAGTACTCATGAATTTTGATCAATGAATAAATGTATTTATTGTATTAAACTGTGTTCTGATTGAATTCAAATACCAAACTTCACAATTTTAGTCAATATTTATTATTTAGTTTCCGATTTATTTCAGCATGGCGATCCATAGATATTGTGAGGTATCATCATCTGGAATACCATTTTTCTTTCACTTCAGAATGTTTCAGATGGATGGGCCGTAAAATGATTTATTCCGGGTTGTGAGGGCAACAAAATGGGGAGTAAGAGTAACAAAAATTCATTCAAGGGTCATATTACGGTAGTCGGTTAGGATTACTGTCGGCGGGTTCTTAC</canonical>
            <polymorphic>TCCATTGGAGCTTAAGAAGATTTTGGCTCCGTACTTTGAAGGTTTCAATCGTACCACTGAGGTTGCTGATGCTGAAGGATCCATGAAATTCATGCATCCACAGGGAGTTATTGTCCAGAGAGACACTACGTCGATTTTTGGAAAGGAAGGTAGGTTTATGGCTTTCTTATCTTTCTCTATCGGAGGCAAAAACGCCCACAATGTTGCCAAATTTCGAATATTCTTATCAATTGGGAATTCATTTCCGTTTTTTCAGCGCTCACCGATCTCTTCAAAAGATGGTATGACTTCACCGGACCGTACTACTTTAACGTGAGTTGAGATGATAGAGGAAATATAAGTTACGACTAACTCACGAGATGGGAGCAGGCGTGAAAAGAGGAATTTGGAAGTTATAAAAAAACCAATAGTGGAGAATTAATTTTAGCGCTACAACGAGAAATACAGTGGAGGAGGTGACTATATTGTCGTCGAAGCCAAAATGGAACTCGAGAAAGTCRGCGGAAACGAGGTTTTCCTTCGTGGAGATGTGATGCACATCTGGAAGAAAGAGCAAGACAAATGGCTCATGTTCTACGAGCAATACCACGTTGAAAACTGAAACTGGAAGCAAAGATGATACGTGATTTCACATGACACTTTTTTCTTATCTCTGTCTCCTCTTTTTGATATCAAGTACTCATGAATTTTGATCAATGAATAAATGTATTTATTGTATTAAACTGTGTTCTGATTGAATTCAAATACCAAACTTCACAATTTTAGTCAATATTTATTATTTAGTTTCCGATTTATTTCAGCATGGCGATCCATAGATATTGTGAGGTATCATCATCTGGAATACCATTTTTCTTTCACTTCAGAATGTTTCAGATGGATGGGCCGTAAAATGATTTATTCCGGGTTGTGAGGGCAACAAAATGGGGAGTAAGAGTAACAAAAATTCATTCAAGGGTCATATTACGGTAGTCGGTTAGGATTACTGTCGGCGGGTTCTTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>500 488 12</canonical_bands>
                <polymorphic_bands>988 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTACGACTAACTCACGAGATG</pcr_primer_p1>
		<pcr_primer_p2>GGTATTGCTCGTAGAACATGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGTTACGACTAACTCACGAGATGGGAGCAGGCGTGAAAAGAGGAATTTGGAAGTTATAAAAAAACCAATAGTGGAGAATTAATTTTAGCGCTACAACGAGAAATACAGTGGAGGAGGTGACTATATTGTCGTCGAAGCCAAAATGGAACTCGAGAAAGTCGGCGGAAACGAGGTTTTCCTTCGTGGAGATGTGATGCACATCTGGAAGAAAGAGCAAGACAAATGGCTCATGTTCTACGAGCAATACC</canonical_amplicon>
		<polymorphic_amplicon>AGTTACGACTAACTCACGAGATGGGAGCAGGCGTGAAAAGAGGAATTTGGAAGTTATAAAAAAACCAATAGTGGAGAATTAATTTTAGCGCTACAACGAGAAATACAGTGGAGGAGGTGACTATATTGTCGTCGAAGCCAAAATGGAACTCGAGAAAGTCRGCGGAAACGAGGTTTTCCTTCGTGGAGATGTGATGCACATCTGGAAGAAAGAGCAAGACAAATGGCTCATGTTCTACGAGCAATACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25840</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>226865</contig_pos>
        <strand></strand>
        <context>TCCTCTTTTT[G/T]KTATCAAGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATACGTGATTTCACATGACACTTTTTTCTTATCTCTGTCTCCTCTTTTT</left_flank>
        <right_flank>ATATCAAGTACTCATGAATTTTGATCAATGAATAAATGTATTTATTGTAT</right_flank>
        <qual_score>49</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTTTCTCTATCGGAGGCAAAAACGCCCACAATGTTGCCAAATTTCGAATATTCTTATCAATTGGGAATTCATTTCCGTTTTTTCAGCGCTCACCGATCTCTTCAAAAGATGGTATGACTTCACCGGACCGTACTACTTTAACGTGAGTTGAGATGATAGAGGAAATATAAGTTACGACTAACTCACGAGATGGGAGCAGGCGTGAAAAGAGGAATTTGGAAGTTATAAAAAAACCAATAGTGGAGAATTAATTTTAGCGCTACAACGAGAAATACAGTGGAGGAGGTGACTATATTGTCGTCGAAGCCAAAATGGAACTCGAGAAAGTCGGCGGAAACGAGGTTTTCCTTCGTGGAGATGTGATGCACATCTGGAAGAAAGAGCAAGACAAATGGCTCATGTTCTACGAGCAATACCACGTTGAAAACTGAAACTGGAAGCAAAGATGATACGTGATTTCACATGACACTTTTTTCTTATCTCTGTCTCCTCTTTTTGATATCAAGTACTCATGAATTTTGATCAATGAATAAATGTATTTATTGTATTAAACTGTGTTCTGATTGAATTCAAATACCAAACTTCACAATTTTAGTCAATATTTATTATTTAGTTTCCGATTTATTTCAGCATGGCGATCCATAGATATTGTGAGGTATCATCATCTGGAATACCATTTTTCTTTCACTTCAGAATGTTTCAGATGGATGGGCCGTAAAATGATTTATTCCGGGTTGTGAGGGCAACAAAATGGGGAGTAAGAGTAACAAAAATTCATTCAAGGGTCATATTACGGTAGTCGGTTAGGATTACTGTCGGCGGGTTCTTACTTACTTTTGGTTGTGGTGGACGATAGGCATGATACACAAAATCTGGTTCATGTTCTTTGTGGCGGATGTGTTGAATCTAAAAAACAAAAAGGGCATACAAAGAACATATATCCGCAATCATTATTACCTTTCTGAAAATGAAGAGTATTGAGATGCAGCCGAAGAAAA</canonical>
            <polymorphic>ATCTTTCTCTATCGGAGGCAAAAACGCCCACAATGTTGCCAAATTTCGAATATTCTTATCAATTGGGAATTCATTTCCGTTTTTTCAGCGCTCACCGATCTCTTCAAAAGATGGTATGACTTCACCGGACCGTACTACTTTAACGTGAGTTGAGATGATAGAGGAAATATAAGTTACGACTAACTCACGAGATGGGAGCAGGCGTGAAAAGAGGAATTTGGAAGTTATAAAAAAACCAATAGTGGAGAATTAATTTTAGCGCTACAACGAGAAATACAGTGGAGGAGGTGACTATATTGTCGTCGAAGCCAAAATGGAACTCGAGAAAGTCGGCGGAAACGAGGTTTTCCTTCGTGGAGATGTGATGCACATCTGGAAGAAAGAGCAAGACAAATGGCTCATGTTCTACGAGCAATACCACGTTGAAAACTGAAACTGGAAGCAAAGATGATACGTGATTTCACATGACACTTTTTTCTTATCTCTGTCTCCTCTTTTTKATATCAAGTACTCATGAATTTTGATCAATGAATAAATGTATTTATTGTATTAAACTGTGTTCTGATTGAATTCAAATACCAAACTTCACAATTTTAGTCAATATTTATTATTTAGTTTCCGATTTATTTCAGCATGGCGATCCATAGATATTGTGAGGTATCATCATCTGGAATACCATTTTTCTTTCACTTCAGAATGTTTCAGATGGATGGGCCGTAAAATGATTTATTCCGGGTTGTGAGGGCAACAAAATGGGGAGTAAGAGTAACAAAAATTCATTCAAGGGTCATATTACGGTAGTCGGTTAGGATTACTGTCGGCGGGTTCTTACTTACTTTTGGTTGTGGTGGACGATAGGCATGATACACAAAATCTGGTTCATGTTCTTTGTGGCGGATGTGTTGAATCTAAAAAACAAAAAGGGCATACAAAGAACATATATCCGCAATCATTATTACCTTTCTGAAAATGAAGAGTATTGAGATGCAGCCGAAGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCAAAGATGATACGTGATTTC</pcr_primer_p1>
		<pcr_primer_p2>TGAAGTGAAAGAAAAATGGTATT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AGCAAAGATGATACGTGATTTCACATGACACTTTTTTCTTATCTCTGTCTCCTCTTTTTGATATCAAGTACTCATGAATTTTGATCAATGAATAAATGTATTTATTGTATTAAACTGTGTTCTGATTGAATTCAAATACCAAACTTCACAATTTTAGTCAATATTTATTATTTAGTTTCCGATTTATTTCAGCATGGCGATCCATAGATATTGTGAGGTATCATCATCTGGAATACCATTTTTCTTTCACTTCA</canonical_amplicon>
		<polymorphic_amplicon>AGCAAAGATGATACGTGATTTCACATGACACTTTTTTCTTATCTCTGTCTCCTCTTTTTKATATCAAGTACTCATGAATTTTGATCAATGAATAAATGTATTTATTGTATTAAACTGTGTTCTGATTGAATTCAAATACCAAACTTCACAATTTTAGTCAATATTTATTATTTAGTTTCCGATTTATTTCAGCATGGCGATCCATAGATATTGTGAGGTATCATCATCTGGAATACCATTTTTCTTTCACTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25841</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>226866</contig_pos>
        <strand>+</strand>
        <context>CCTCTTTTTK[G/T]TATCAAGTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATACGTGATTTCACATGACACTTTTTTCTTATCTCTGTCTCCTCTTTTTG</left_flank>
        <right_flank>TATCAAGTACTCATGAATTTTGATCAATGAATAAATGTATTTATTGTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTTCTCTATCGGAGGCAAAAACGCCCACAATGTTGCCAAATTTCGAATATTCTTATCAATTGGGAATTCATTTCCGTTTTTTCAGCGCTCACCGATCTCTTCAAAAGATGGTATGACTTCACCGGACCGTACTACTTTAACGTGAGTTGAGATGATAGAGGAAATATAAGTTACGACTAACTCACGAGATGGGAGCAGGCGTGAAAAGAGGAATTTGGAAGTTATAAAAAAACCAATAGTGGAGAATTAATTTTAGCGCTACAACGAGAAATACAGTGGAGGAGGTGACTATATTGTCGTCGAAGCCAAAATGGAACTCGAGAAAGTCGGCGGAAACGAGGTTTTCCTTCGTGGAGATGTGATGCACATCTGGAAGAAAGAGCAAGACAAATGGCTCATGTTCTACGAGCAATACCACGTTGAAAACTGAAACTGGAAGCAAAGATGATACGTGATTTCACATGACACTTTTTTCTTATCTCTGTCTCCTCTTTTTGATATCAAGTACTCATGAATTTTGATCAATGAATAAATGTATTTATTGTATTAAACTGTGTTCTGATTGAATTCAAATACCAAACTTCACAATTTTAGTCAATATTTATTATTTAGTTTCCGATTTATTTCAGCATGGCGATCCATAGATATTGTGAGGTATCATCATCTGGAATACCATTTTTCTTTCACTTCAGAATGTTTCAGATGGATGGGCCGTAAAATGATTTATTCCGGGTTGTGAGGGCAACAAAATGGGGAGTAAGAGTAACAAAAATTCATTCAAGGGTCATATTACGGTAGTCGGTTAGGATTACTGTCGGCGGGTTCTTACTTACTTTTGGTTGTGGTGGACGATAGGCATGATACACAAAATCTGGTTCATGTTCTTTGTGGCGGATGTGTTGAATCTAAAAAACAAAAAGGGCATACAAAGAACATATATCCGCAATCATTATTACCTTTCTGAAAATGAAGAGTATTGAGATGCAGCCGAAGAAAAA</canonical>
            <polymorphic>TCTTTCTCTATCGGAGGCAAAAACGCCCACAATGTTGCCAAATTTCGAATATTCTTATCAATTGGGAATTCATTTCCGTTTTTTCAGCGCTCACCGATCTCTTCAAAAGATGGTATGACTTCACCGGACCGTACTACTTTAACGTGAGTTGAGATGATAGAGGAAATATAAGTTACGACTAACTCACGAGATGGGAGCAGGCGTGAAAAGAGGAATTTGGAAGTTATAAAAAAACCAATAGTGGAGAATTAATTTTAGCGCTACAACGAGAAATACAGTGGAGGAGGTGACTATATTGTCGTCGAAGCCAAAATGGAACTCGAGAAAGTCGGCGGAAACGAGGTTTTCCTTCGTGGAGATGTGATGCACATCTGGAAGAAAGAGCAAGACAAATGGCTCATGTTCTACGAGCAATACCACGTTGAAAACTGAAACTGGAAGCAAAGATGATACGTGATTTCACATGACACTTTTTTCTTATCTCTGTCTCCTCTTTTTGKTATCAAGTACTCATGAATTTTGATCAATGAATAAATGTATTTATTGTATTAAACTGTGTTCTGATTGAATTCAAATACCAAACTTCACAATTTTAGTCAATATTTATTATTTAGTTTCCGATTTATTTCAGCATGGCGATCCATAGATATTGTGAGGTATCATCATCTGGAATACCATTTTTCTTTCACTTCAGAATGTTTCAGATGGATGGGCCGTAAAATGATTTATTCCGGGTTGTGAGGGCAACAAAATGGGGAGTAAGAGTAACAAAAATTCATTCAAGGGTCATATTACGGTAGTCGGTTAGGATTACTGTCGGCGGGTTCTTACTTACTTTTGGTTGTGGTGGACGATAGGCATGATACACAAAATCTGGTTCATGTTCTTTGTGGCGGATGTGTTGAATCTAAAAAACAAAAAGGGCATACAAAGAACATATATCCGCAATCATTATTACCTTTCTGAAAATGAAGAGTATTGAGATGCAGCCGAAGAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATACGTGATTTCACATGACAC</pcr_primer_p1>
		<pcr_primer_p2>CATTCTGAAGTGAAAGAAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATACGTGATTTCACATGACACTTTTTTCTTATCTCTGTCTCCTCTTTTTGATATCAAGTACTCATGAATTTTGATCAATGAATAAATGTATTTATTGTATTAAACTGTGTTCTGATTGAATTCAAATACCAAACTTCACAATTTTAGTCAATATTTATTATTTAGTTTCCGATTTATTTCAGCATGGCGATCCATAGATATTGTGAGGTATCATCATCTGGAATACCATTTTTCTTTCACTTCAGAATG</canonical_amplicon>
		<polymorphic_amplicon>GATACGTGATTTCACATGACACTTTTTTCTTATCTCTGTCTCCTCTTTTTGKTATCAAGTACTCATGAATTTTGATCAATGAATAAATGTATTTATTGTATTAAACTGTGTTCTGATTGAATTCAAATACCAAACTTCACAATTTTAGTCAATATTTATTATTTAGTTTCCGATTTATTTCAGCATGGCGATCCATAGATATTGTGAGGTATCATCATCTGGAATACCATTTTTCTTTCACTTCAGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25842</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>226975</contig_pos>
        <strand>+</strand>
        <context>AATATTTATT[A/G]KTTAGTTTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTGATTGAATTCAAATACCAAACTTCACAATTTTAGTCAATATTTATT</left_flank>
        <right_flank>TTTAGTTTCCGATTTATTTCAGCATGGCGATCCATAGATATTGTGAGGTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGTATGACTTCACCGGACCGTACTACTTTAACGTGAGTTGAGATGATAGAGGAAATATAAGTTACGACTAACTCACGAGATGGGAGCAGGCGTGAAAAGAGGAATTTGGAAGTTATAAAAAAACCAATAGTGGAGAATTAATTTTAGCGCTACAACGAGAAATACAGTGGAGGAGGTGACTATATTGTCGTCGAAGCCAAAATGGAACTCGAGAAAGTCGGCGGAAACGAGGTTTTCCTTCGTGGAGATGTGATGCACATCTGGAAGAAAGAGCAAGACAAATGGCTCATGTTCTACGAGCAATACCACGTTGAAAACTGAAACTGGAAGCAAAGATGATACGTGATTTCACATGACACTTTTTTCTTATCTCTGTCTCCTCTTTTTGATATCAAGTACTCATGAATTTTGATCAATGAATAAATGTATTTATTGTATTAAACTGTGTTCTGATTGAATTCAAATACCAAACTTCACAATTTTAGTCAATATTTATTATTTAGTTTCCGATTTATTTCAGCATGGCGATCCATAGATATTGTGAGGTATCATCATCTGGAATACCATTTTTCTTTCACTTCAGAATGTTTCAGATGGATGGGCCGTAAAATGATTTATTCCGGGTTGTGAGGGCAACAAAATGGGGAGTAAGAGTAACAAAAATTCATTCAAGGGTCATATTACGGTAGTCGGTTAGGATTACTGTCGGCGGGTTCTTACTTACTTTTGGTTGTGGTGGACGATAGGCATGATACACAAAATCTGGTTCATGTTCTTTGTGGCGGATGTGTTGAATCTAAAAAACAAAAAGGGCATACAAAGAACATATATCCGCAATCATTATTACCTTTCTGAAAATGAAGAGTATTGAGATGCAGCCGAAGAAAAATATCATAAGAGTCAAGGTGATCAACAAGATAGTCTCATTGAATTGGCTCGTATTTGATATTGGTTCCTCGGACAAAGATGACGTATTCATGTGACTGTTTGTGATAAAG</canonical>
            <polymorphic>ATGGTATGACTTCACCGGACCGTACTACTTTAACGTGAGTTGAGATGATAGAGGAAATATAAGTTACGACTAACTCACGAGATGGGAGCAGGCGTGAAAAGAGGAATTTGGAAGTTATAAAAAAACCAATAGTGGAGAATTAATTTTAGCGCTACAACGAGAAATACAGTGGAGGAGGTGACTATATTGTCGTCGAAGCCAAAATGGAACTCGAGAAAGTCGGCGGAAACGAGGTTTTCCTTCGTGGAGATGTGATGCACATCTGGAAGAAAGAGCAAGACAAATGGCTCATGTTCTACGAGCAATACCACGTTGAAAACTGAAACTGGAAGCAAAGATGATACGTGATTTCACATGACACTTTTTTCTTATCTCTGTCTCCTCTTTTTGATATCAAGTACTCATGAATTTTGATCAATGAATAAATGTATTTATTGTATTAAACTGTGTTCTGATTGAATTCAAATACCAAACTTCACAATTTTAGTCAATATTTATTRTTTAGTTTCCGATTTATTTCAGCATGGCGATCCATAGATATTGTGAGGTATCATCATCTGGAATACCATTTTTCTTTCACTTCAGAATGTTTCAGATGGATGGGCCGTAAAATGATTTATTCCGGGTTGTGAGGGCAACAAAATGGGGAGTAAGAGTAACAAAAATTCATTCAAGGGTCATATTACGGTAGTCGGTTAGGATTACTGTCGGCGGGTTCTTACTTACTTTTGGTTGTGGTGGACGATAGGCATGATACACAAAATCTGGTTCATGTTCTTTGTGGCGGATGTGTTGAATCTAAAAAACAAAAAGGGCATACAAAGAACATATATCCGCAATCATTATTACCTTTCTGAAAATGAAGAGTATTGAGATGCAGCCGAAGAAAAATATCATAAGAGTCAAGGTGATCAACAAGATAGTCTCATTGAATTGGCTCGTATTTGATATTGGTTCCTCGGACAAAGATGACGTATTCATGTGACTGTTTGTGATAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATACGTGATTTCACATGACAC</pcr_primer_p1>
		<pcr_primer_p2>CATTCTGAAGTGAAAGAAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATACGTGATTTCACATGACACTTTTTTCTTATCTCTGTCTCCTCTTTTTGATATCAAGTACTCATGAATTTTGATCAATGAATAAATGTATTTATTGTATTAAACTGTGTTCTGATTGAATTCAAATACCAAACTTCACAATTTTAGTCAATATTTATTATTTAGTTTCCGATTTATTTCAGCATGGCGATCCATAGATATTGTGAGGTATCATCATCTGGAATACCATTTTTCTTTCACTTCAGAATG</canonical_amplicon>
		<polymorphic_amplicon>GATACGTGATTTCACATGACACTTTTTTCTTATCTCTGTCTCCTCTTTTTGATATCAAGTACTCATGAATTTTGATCAATGAATAAATGTATTTATTGTATTAAACTGTGTTCTGATTGAATTCAAATACCAAACTTCACAATTTTAGTCAATATTTATTRTTTAGTTTCCGATTTATTTCAGCATGGCGATCCATAGATATTGTGAGGTATCATCATCTGGAATACCATTTTTCTTTCACTTCAGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25843</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>226976</contig_pos>
        <strand>+</strand>
        <context>ATATTTATTR[G/T]TTAGTTTCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTGATTGAATTCAAATACCAAACTTCACAATTTTAGTCAATATTTATTA</left_flank>
        <right_flank>TTAGTTTCCGATTTATTTCAGCATGGCGATCCATAGATATTGTGAGGTAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTATGACTTCACCGGACCGTACTACTTTAACGTGAGTTGAGATGATAGAGGAAATATAAGTTACGACTAACTCACGAGATGGGAGCAGGCGTGAAAAGAGGAATTTGGAAGTTATAAAAAAACCAATAGTGGAGAATTAATTTTAGCGCTACAACGAGAAATACAGTGGAGGAGGTGACTATATTGTCGTCGAAGCCAAAATGGAACTCGAGAAAGTCGGCGGAAACGAGGTTTTCCTTCGTGGAGATGTGATGCACATCTGGAAGAAAGAGCAAGACAAATGGCTCATGTTCTACGAGCAATACCACGTTGAAAACTGAAACTGGAAGCAAAGATGATACGTGATTTCACATGACACTTTTTTCTTATCTCTGTCTCCTCTTTTTGATATCAAGTACTCATGAATTTTGATCAATGAATAAATGTATTTATTGTATTAAACTGTGTTCTGATTGAATTCAAATACCAAACTTCACAATTTTAGTCAATATTTATTATTTAGTTTCCGATTTATTTCAGCATGGCGATCCATAGATATTGTGAGGTATCATCATCTGGAATACCATTTTTCTTTCACTTCAGAATGTTTCAGATGGATGGGCCGTAAAATGATTTATTCCGGGTTGTGAGGGCAACAAAATGGGGAGTAAGAGTAACAAAAATTCATTCAAGGGTCATATTACGGTAGTCGGTTAGGATTACTGTCGGCGGGTTCTTACTTACTTTTGGTTGTGGTGGACGATAGGCATGATACACAAAATCTGGTTCATGTTCTTTGTGGCGGATGTGTTGAATCTAAAAAACAAAAAGGGCATACAAAGAACATATATCCGCAATCATTATTACCTTTCTGAAAATGAAGAGTATTGAGATGCAGCCGAAGAAAAATATCATAAGAGTCAAGGTGATCAACAAGATAGTCTCATTGAATTGGCTCGTATTTGATATTGGTTCCTCGGACAAAGATGACGTATTCATGTGACTGTTTGTGATAAAGT</canonical>
            <polymorphic>TGGTATGACTTCACCGGACCGTACTACTTTAACGTGAGTTGAGATGATAGAGGAAATATAAGTTACGACTAACTCACGAGATGGGAGCAGGCGTGAAAAGAGGAATTTGGAAGTTATAAAAAAACCAATAGTGGAGAATTAATTTTAGCGCTACAACGAGAAATACAGTGGAGGAGGTGACTATATTGTCGTCGAAGCCAAAATGGAACTCGAGAAAGTCGGCGGAAACGAGGTTTTCCTTCGTGGAGATGTGATGCACATCTGGAAGAAAGAGCAAGACAAATGGCTCATGTTCTACGAGCAATACCACGTTGAAAACTGAAACTGGAAGCAAAGATGATACGTGATTTCACATGACACTTTTTTCTTATCTCTGTCTCCTCTTTTTGATATCAAGTACTCATGAATTTTGATCAATGAATAAATGTATTTATTGTATTAAACTGTGTTCTGATTGAATTCAAATACCAAACTTCACAATTTTAGTCAATATTTATTAKTTAGTTTCCGATTTATTTCAGCATGGCGATCCATAGATATTGTGAGGTATCATCATCTGGAATACCATTTTTCTTTCACTTCAGAATGTTTCAGATGGATGGGCCGTAAAATGATTTATTCCGGGTTGTGAGGGCAACAAAATGGGGAGTAAGAGTAACAAAAATTCATTCAAGGGTCATATTACGGTAGTCGGTTAGGATTACTGTCGGCGGGTTCTTACTTACTTTTGGTTGTGGTGGACGATAGGCATGATACACAAAATCTGGTTCATGTTCTTTGTGGCGGATGTGTTGAATCTAAAAAACAAAAAGGGCATACAAAGAACATATATCCGCAATCATTATTACCTTTCTGAAAATGAAGAGTATTGAGATGCAGCCGAAGAAAAATATCATAAGAGTCAAGGTGATCAACAAGATAGTCTCATTGAATTGGCTCGTATTTGATATTGGTTCCTCGGACAAAGATGACGTATTCATGTGACTGTTTGTGATAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATACGTGATTTCACATGACAC</pcr_primer_p1>
		<pcr_primer_p2>CATTCTGAAGTGAAAGAAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATACGTGATTTCACATGACACTTTTTTCTTATCTCTGTCTCCTCTTTTTGATATCAAGTACTCATGAATTTTGATCAATGAATAAATGTATTTATTGTATTAAACTGTGTTCTGATTGAATTCAAATACCAAACTTCACAATTTTAGTCAATATTTATTATTTAGTTTCCGATTTATTTCAGCATGGCGATCCATAGATATTGTGAGGTATCATCATCTGGAATACCATTTTTCTTTCACTTCAGAATG</canonical_amplicon>
		<polymorphic_amplicon>GATACGTGATTTCACATGACACTTTTTTCTTATCTCTGTCTCCTCTTTTTGATATCAAGTACTCATGAATTTTGATCAATGAATAAATGTATTTATTGTATTAAACTGTGTTCTGATTGAATTCAAATACCAAACTTCACAATTTTAGTCAATATTTATTAKTTAGTTTCCGATTTATTTCAGCATGGCGATCCATAGATATTGTGAGGTATCATCATCTGGAATACCATTTTTCTTTCACTTCAGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25844</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>227031</contig_pos>
        <strand>+</strand>
        <context>AGGTATCATC[A/G]TCTGGAATAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCCGATTTATTTCAGCATGGCGATCCATAGATATTGTGAGGTATCATC</left_flank>
        <right_flank>TCTGGAATACCATTTTTCTTTCACTTCAGAATGTTTCAGATGGATGGGCC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATAAGTTACGACTAACTCACGAGATGGGAGCAGGCGTGAAAAGAGGAATTTGGAAGTTATAAAAAAACCAATAGTGGAGAATTAATTTTAGCGCTACAACGAGAAATACAGTGGAGGAGGTGACTATATTGTCGTCGAAGCCAAAATGGAACTCGAGAAAGTCGGCGGAAACGAGGTTTTCCTTCGTGGAGATGTGATGCACATCTGGAAGAAAGAGCAAGACAAATGGCTCATGTTCTACGAGCAATACCACGTTGAAAACTGAAACTGGAAGCAAAGATGATACGTGATTTCACATGACACTTTTTTCTTATCTCTGTCTCCTCTTTTTGATATCAAGTACTCATGAATTTTGATCAATGAATAAATGTATTTATTGTATTAAACTGTGTTCTGATTGAATTCAAATACCAAACTTCACAATTTTAGTCAATATTTATTATTTAGTTTCCGATTTATTTCAGCATGGCGATCCATAGATATTGTGAGGTATCATCATCTGGAATACCATTTTTCTTTCACTTCAGAATGTTTCAGATGGATGGGCCGTAAAATGATTTATTCCGGGTTGTGAGGGCAACAAAATGGGGAGTAAGAGTAACAAAAATTCATTCAAGGGTCATATTACGGTAGTCGGTTAGGATTACTGTCGGCGGGTTCTTACTTACTTTTGGTTGTGGTGGACGATAGGCATGATACACAAAATCTGGTTCATGTTCTTTGTGGCGGATGTGTTGAATCTAAAAAACAAAAAGGGCATACAAAGAACATATATCCGCAATCATTATTACCTTTCTGAAAATGAAGAGTATTGAGATGCAGCCGAAGAAAAATATCATAAGAGTCAAGGTGATCAACAAGATAGTCTCATTGAATTGGCTCGTATTTGATATTGGTTCCTCGGACAAAGATGACGTATTCATGTGACTGTTTGTGATAAAGTTGACTGGAAGTTTACAACAACCTTTCTCGCAACAACCAGAAGCCAAAGGACATGA</canonical>
            <polymorphic>ATATAAGTTACGACTAACTCACGAGATGGGAGCAGGCGTGAAAAGAGGAATTTGGAAGTTATAAAAAAACCAATAGTGGAGAATTAATTTTAGCGCTACAACGAGAAATACAGTGGAGGAGGTGACTATATTGTCGTCGAAGCCAAAATGGAACTCGAGAAAGTCGGCGGAAACGAGGTTTTCCTTCGTGGAGATGTGATGCACATCTGGAAGAAAGAGCAAGACAAATGGCTCATGTTCTACGAGCAATACCACGTTGAAAACTGAAACTGGAAGCAAAGATGATACGTGATTTCACATGACACTTTTTTCTTATCTCTGTCTCCTCTTTTTGATATCAAGTACTCATGAATTTTGATCAATGAATAAATGTATTTATTGTATTAAACTGTGTTCTGATTGAATTCAAATACCAAACTTCACAATTTTAGTCAATATTTATTATTTAGTTTCCGATTTATTTCAGCATGGCGATCCATAGATATTGTGAGGTATCATCRTCTGGAATACCATTTTTCTTTCACTTCAGAATGTTTCAGATGGATGGGCCGTAAAATGATTTATTCCGGGTTGTGAGGGCAACAAAATGGGGAGTAAGAGTAACAAAAATTCATTCAAGGGTCATATTACGGTAGTCGGTTAGGATTACTGTCGGCGGGTTCTTACTTACTTTTGGTTGTGGTGGACGATAGGCATGATACACAAAATCTGGTTCATGTTCTTTGTGGCGGATGTGTTGAATCTAAAAAACAAAAAGGGCATACAAAGAACATATATCCGCAATCATTATTACCTTTCTGAAAATGAAGAGTATTGAGATGCAGCCGAAGAAAAATATCATAAGAGTCAAGGTGATCAACAAGATAGTCTCATTGAATTGGCTCGTATTTGATATTGGTTCCTCGGACAAAGATGACGTATTCATGTGACTGTTTGTGATAAAGTTGACTGGAAGTTTACAACAACCTTTCTCGCAACAACCAGAAGCCAAAGGACATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAATACCAAACTTCACAATTT</pcr_primer_p1>
		<pcr_primer_p2>GACAGTAATCCTAACCGACTACC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCAAATACCAAACTTCACAATTTTAGTCAATATTTATTATTTAGTTTCCGATTTATTTCAGCATGGCGATCCATAGATATTGTGAGGTATCATCATCTGGAATACCATTTTTCTTTCACTTCAGAATGTTTCAGATGGATGGGCCGTAAAATGATTTATTCCGGGTTGTGAGGGCAACAAAATGGGGAGTAAGAGTAACAAAAATTCATTCAAGGGTCATATTACGGTAGTCGGTTAGGATTACTGTC</canonical_amplicon>
		<polymorphic_amplicon>TCAAATACCAAACTTCACAATTTTAGTCAATATTTATTATTTAGTTTCCGATTTATTTCAGCATGGCGATCCATAGATATTGTGAGGTATCATCRTCTGGAATACCATTTTTCTTTCACTTCAGAATGTTTCAGATGGATGGGCCGTAAAATGATTTATTCCGGGTTGTGAGGGCAACAAAATGGGGAGTAAGAGTAACAAAAATTCATTCAAGGGTCATATTACGGTAGTCGGTTAGGATTACTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25845</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>236647</contig_pos>
        <strand></strand>
        <context>ttacaaaaat[G/T]tgttcaacat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGAGCTAGGCTAAATTTTCCAAAACTTTGAAATGACCATTTTACAAAAAT</left_flank>
        <right_flank>TGTTCAACATCAACAGGAAAAAAGCACCCGCGCCAGGCCAGGGTCAGCCG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTATGAATGTGTCTTCTGACTGACATACATTCAAATAATGAGGTTACTTTTTCGTCTTCTTAATGTCAAATAGATGGTTGTTTGATATCCTGAAGATCACAAAGTTCAGAAGATTCTGTTGTCAACATGTGTCGTCTATGTGACTTTTTAGAATTAATCTGGTTTCACATGTCAACAAAGAAGATCCCACGGACTGCGATGTCTTCTGGATTTTTTTTCTCACGAGATCCTAGAAACTCGTATATTTTTCAGAATTCCACGATAACTGAGAATTGTATTTTCTCCATAATTACAAGTCCGAGAATGCAATATTTCCACATGCAGGCCCGGCCCGGGTCTTCGAAGGCAAACTTTTGAAAGAGATTTTTTTTGAGAAAAAAATTATTGGTATTATTGGTAGTTGTTTATCAATTACTTTGCTTTCATGGATTGAGATATTTTAAGAAGGGAGCTAGGCTAAATTTTCCAAAACTTTGAAATGACCATTTTACAAAAATGTGTTCAACATCAACAGGAAAAAAGCACCCGCGCCAGGCCAGGGTCAGCCGGCCCGGAATGTTGATGATATGACGAAATTATCTGGCTTCTTTCAAACCGAAGCCTCTTTTTTCACAGAGTTCGAAATTTTTCTAGAATTGATCAAAGTTCTTGGATCCTGTCCAAACTGCTTACTCATTTCCACCCACTTTTCTTTCAATGGCCTGAAGGCGTTTGACCTTCTTGGCGCTCCTTTTTTTCATCTTTCATTCCTTCTTCCAATTCCAATTTCTCATCAAGCTTCCTATCGGAAATTAAACTCTTCCATTCCTCCCCATCTACCGTAATCCATTATTCCATCCTCTTCTTTCCTTTCTTTTTTTGCTCATTCTTCTGACGGCTTTTCCCTTTCTTGTTCTTTAACATTTTCTTGTACCTATTCATCATTTTGTCAAGTAAGTACGCAGAGGATTTGTTCGTTTCACTTTTTATCTAGTCATCTGTTTTTTTTTCCTTTCCTA</canonical>
            <polymorphic>ATCTATGAATGTGTCTTCTGACTGACATACATTCAAATAATGAGGTTACTTTTTCGTCTTCTTAATGTCAAATAGATGGTTGTTTGATATCCTGAAGATCACAAAGTTCAGAAGATTCTGTTGTCAACATGTGTCGTCTATGTGACTTTTTAGAATTAATCTGGTTTCACATGTCAACAAAGAAGATCCCACGGACTGCGATGTCTTCTGGATTTTTTTTCTCACGAGATCCTAGAAACTCGTATATTTTTCAGAATTCCACGATAACTGAGAATTGTATTTTCTCCATAATTACAAGTCCGAGAATGCAATATTTCCACATGCAGGCCCGGCCCGGGTCTTCGAAGGCAAACTTTTGAAAGAGATTTTTTTTGAGAAAAAAATTATTGGTATTATTGGTAGTTGTTTATCAATTACTTTGCTTTCATGGATTGAGATATTTTAAGAAGGGAGCTAGGCTAAATTTTCCAAAACTTTGAAATGACCATTTTACAAAAATKTGTTCAACATCAACAGGAAAAAAGCACCCGCGCCAGGCCAGGGTCAGCCGGCCCGGAATGTTGATGATATGACGAAATTATCTGGCTTCTTTCAAACCGAAGCCTCTTTTTTCACAGAGTTCGAAATTTTTCTAGAATTGATCAAAGTTCTTGGATCCTGTCCAAACTGCTTACTCATTTCCACCCACTTTTCTTTCAATGGCCTGAAGGCGTTTGACCTTCTTGGCGCTCCTTTTTTTCATCTTTCATTCCTTCTTCCAATTCCAATTTCTCATCAAGCTTCCTATCGGAAATTAAACTCTTCCATTCCTCCCCATCTACCGTAATCCATTATTCCATCCTCTTCTTTCCTTTCTTTTTTTGCTCATTCTTCTGACGGCTTTTCCCTTTCTTGTTCTTTAACATTTTCTTGTACCTATTCATCATTTTGTCAAGTAAGTACGCAGAGGATTTGTTCGTTTCACTTTTTATCTAGTCATCTGTTTTTTTTTCCTTTCCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>276 183 88 88 69 58 37 37 33 32 25 24 22 13 11 4</canonical_bands>
                <polymorphic_bands>276 207 88 88 69 58 37 37 33 32 25 22 13 11 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAGAATGCAATATTTCCAC</pcr_primer_p1>
		<pcr_primer_p2>GGTTTGAAAGAAGCCAGATA</pcr_primer_p2>
		<pcr_amplicon_size>298</pcr_amplicon_size>
		<canonical_amplicon>CGAGAATGCAATATTTCCACATGCAGGCCCGGCCCGGGTCTTCGAAGGCAAACTTTTGAAAGAGATTTTTTTTGAGAAAAAAATTATTGGTATTATTGGTAGTTGTTTATCAATTACTTTGCTTTCATGGATTGAGATATTTTAAGAAGGGAGCTAGGCTAAATTTTCCAAAACTTTGAAATGACCATTTTACAAAAATGTGTTCAACATCAACAGGAAAAAAGCACCCGCGCCAGGCCAGGGTCAGCCGGCCCGGAATGTTGATGATATGACGAAATTATCTGGCTTCTTTCAAACC</canonical_amplicon>
		<polymorphic_amplicon>CGAGAATGCAATATTTCCACATGCAGGCCCGGCCCGGGTCTTCGAAGGCAAACTTTTGAAAGAGATTTTTTTTGAGAAAAAAATTATTGGTATTATTGGTAGTTGTTTATCAATTACTTTGCTTTCATGGATTGAGATATTTTAAGAAGGGAGCTAGGCTAAATTTTCCAAAACTTTGAAATGACCATTTTACAAAAATKTGTTCAACATCAACAGGAAAAAAGCACCCGCGCCAGGCCAGGGTCAGCCGGCCCGGAATGTTGATGATATGACGAAATTATCTGGCTTCTTTCAAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25846</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>236707</contig_pos>
        <strand></strand>
        <context>GGCCCGGAAT[G/A]TTGATGATAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCAACAGGAAAAAAGCACCCGCGCCAGGCCAGGGTCAGCCGGCCCGGAAT</left_flank>
        <right_flank>TTGATGATATGACGAAATTATCTGGCTTCTTTCAAACCGAAGCCTCTTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTAATGTCAAATAGATGGTTGTTTGATATCCTGAAGATCACAAAGTTCAGAAGATTCTGTTGTCAACATGTGTCGTCTATGTGACTTTTTAGAATTAATCTGGTTTCACATGTCAACAAAGAAGATCCCACGGACTGCGATGTCTTCTGGATTTTTTTTCTCACGAGATCCTAGAAACTCGTATATTTTTCAGAATTCCACGATAACTGAGAATTGTATTTTCTCCATAATTACAAGTCCGAGAATGCAATATTTCCACATGCAGGCCCGGCCCGGGTCTTCGAAGGCAAACTTTTGAAAGAGATTTTTTTTGAGAAAAAAATTATTGGTATTATTGGTAGTTGTTTATCAATTACTTTGCTTTCATGGATTGAGATATTTTAAGAAGGGAGCTAGGCTAAATTTTCCAAAACTTTGAAATGACCATTTTACAAAAATGTGTTCAACATCAACAGGAAAAAAGCACCCGCGCCAGGCCAGGGTCAGCCGGCCCGGAATGTTGATGATATGACGAAATTATCTGGCTTCTTTCAAACCGAAGCCTCTTTTTTCACAGAGTTCGAAATTTTTCTAGAATTGATCAAAGTTCTTGGATCCTGTCCAAACTGCTTACTCATTTCCACCCACTTTTCTTTCAATGGCCTGAAGGCGTTTGACCTTCTTGGCGCTCCTTTTTTTCATCTTTCATTCCTTCTTCCAATTCCAATTTCTCATCAAGCTTCCTATCGGAAATTAAACTCTTCCATTCCTCCCCATCTACCGTAATCCATTATTCCATCCTCTTCTTTCCTTTCTTTTTTTGCTCATTCTTCTGACGGCTTTTCCCTTTCTTGTTCTTTAACATTTTCTTGTACCTATTCATCATTTTGTCAAGTAAGTACGCAGAGGATTTGTTCGTTTCACTTTTTATCTAGTCATCTGTTTTTTTTTCCTTTCCTACTTTTCCTATCCTTTTCTTTGCTTCTTCTTCGTTTATTCAAATTCCAAACATCGTGTTTT</canonical>
            <polymorphic>CTTAATGTCAAATAGATGGTTGTTTGATATCCTGAAGATCACAAAGTTCAGAAGATTCTGTTGTCAACATGTGTCGTCTATGTGACTTTTTAGAATTAATCTGGTTTCACATGTCAACAAAGAAGATCCCACGGACTGCGATGTCTTCTGGATTTTTTTTCTCACGAGATCCTAGAAACTCGTATATTTTTCAGAATTCCACGATAACTGAGAATTGTATTTTCTCCATAATTACAAGTCCGAGAATGCAATATTTCCACATGCAGGCCCGGCCCGGGTCTTCGAAGGCAAACTTTTGAAAGAGATTTTTTTTGAGAAAAAAATTATTGGTATTATTGGTAGTTGTTTATCAATTACTTTGCTTTCATGGATTGAGATATTTTAAGAAGGGAGCTAGGCTAAATTTTCCAAAACTTTGAAATGACCATTTTACAAAAATGTGTTCAACATCAACAGGAAAAAAGCACCCGCGCCAGGCCAGGGTCAGCCGGCCCGGAATRTTGATGATATGACGAAATTATCTGGCTTCTTTCAAACCGAAGCCTCTTTTTTCACAGAGTTCGAAATTTTTCTAGAATTGATCAAAGTTCTTGGATCCTGTCCAAACTGCTTACTCATTTCCACCCACTTTTCTTTCAATGGCCTGAAGGCGTTTGACCTTCTTGGCGCTCCTTTTTTTCATCTTTCATTCCTTCTTCCAATTCCAATTTCTCATCAAGCTTCCTATCGGAAATTAAACTCTTCCATTCCTCCCCATCTACCGTAATCCATTATTCCATCCTCTTCTTTCCTTTCTTTTTTTGCTCATTCTTCTGACGGCTTTTCCCTTTCTTGTTCTTTAACATTTTCTTGTACCTATTCATCATTTTGTCAAGTAAGTACGCAGAGGATTTGTTCGTTTCACTTTTTATCTAGTCATCTGTTTTTTTTTCCTTTCCTACTTTTCCTATCCTTTTCTTTGCTTCTTCTTCGTTTATTCAAATTCCAAACATCGTGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGAATGCAATATTTCCAC</pcr_primer_p1>
		<pcr_primer_p2>AGAACTTTGATCAATTCTAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>351</pcr_amplicon_size>
		<canonical_amplicon>CGAGAATGCAATATTTCCACATGCAGGCCCGGCCCGGGTCTTCGAAGGCAAACTTTTGAAAGAGATTTTTTTTGAGAAAAAAATTATTGGTATTATTGGTAGTTGTTTATCAATTACTTTGCTTTCATGGATTGAGATATTTTAAGAAGGGAGCTAGGCTAAATTTTCCAAAACTTTGAAATGACCATTTTACAAAAATGTGTTCAACATCAACAGGAAAAAAGCACCCGCGCCAGGCCAGGGTCAGCCGGCCCGGAATGTTGATGATATGACGAAATTATCTGGCTTCTTTCAAACCGAAGCCTCTTTTTTCACAGAGTTCGAAATTTTTCTAGAATTGATCAAAGTTCT</canonical_amplicon>
		<polymorphic_amplicon>CGAGAATGCAATATTTCCACATGCAGGCCCGGCCCGGGTCTTCGAAGGCAAACTTTTGAAAGAGATTTTTTTTGAGAAAAAAATTATTGGTATTATTGGTAGTTGTTTATCAATTACTTTGCTTTCATGGATTGAGATATTTTAAGAAGGGAGCTAGGCTAAATTTTCCAAAACTTTGAAATGACCATTTTACAAAAATGTGTTCAACATCAACAGGAAAAAAGCACCCGCGCCAGGCCAGGGTCAGCCGGCCCGGAATRTTGATGATATGACGAAATTATCTGGCTTCTTTCAAACCGAAGCCTCTTTTTTCACAGAGTTCGAAATTTTTCTAGAATTGATCAAAGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25847</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>236725</contig_pos>
        <strand></strand>
        <context>TATGACGAAA[T/C]TATCTGGCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCGCGCCAGGCCAGGGTCAGCCGGCCCGGAATGTTGATGATATGACGAAA</left_flank>
        <right_flank>TATCTGGCTTCTTTCAAACCGAAGCCTCTTTTTTCACAGAGTTCGAAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTGTTTGATATCCTGAAGATCACAAAGTTCAGAAGATTCTGTTGTCAACATGTGTCGTCTATGTGACTTTTTAGAATTAATCTGGTTTCACATGTCAACAAAGAAGATCCCACGGACTGCGATGTCTTCTGGATTTTTTTTCTCACGAGATCCTAGAAACTCGTATATTTTTCAGAATTCCACGATAACTGAGAATTGTATTTTCTCCATAATTACAAGTCCGAGAATGCAATATTTCCACATGCAGGCCCGGCCCGGGTCTTCGAAGGCAAACTTTTGAAAGAGATTTTTTTTGAGAAAAAAATTATTGGTATTATTGGTAGTTGTTTATCAATTACTTTGCTTTCATGGATTGAGATATTTTAAGAAGGGAGCTAGGCTAAATTTTCCAAAACTTTGAAATGACCATTTTACAAAAATGTGTTCAACATCAACAGGAAAAAAGCACCCGCGCCAGGCCAGGGTCAGCCGGCCCGGAATGTTGATGATATGACGAAATTATCTGGCTTCTTTCAAACCGAAGCCTCTTTTTTCACAGAGTTCGAAATTTTTCTAGAATTGATCAAAGTTCTTGGATCCTGTCCAAACTGCTTACTCATTTCCACCCACTTTTCTTTCAATGGCCTGAAGGCGTTTGACCTTCTTGGCGCTCCTTTTTTTCATCTTTCATTCCTTCTTCCAATTCCAATTTCTCATCAAGCTTCCTATCGGAAATTAAACTCTTCCATTCCTCCCCATCTACCGTAATCCATTATTCCATCCTCTTCTTTCCTTTCTTTTTTTGCTCATTCTTCTGACGGCTTTTCCCTTTCTTGTTCTTTAACATTTTCTTGTACCTATTCATCATTTTGTCAAGTAAGTACGCAGAGGATTTGTTCGTTTCACTTTTTATCTAGTCATCTGTTTTTTTTTCCTTTCCTACTTTTCCTATCCTTTTCTTTGCTTCTTCTTCGTTTATTCAAATTCCAAACATCGTGTTTTTTGAATACCTATCTGATT</canonical>
            <polymorphic>GTTGTTTGATATCCTGAAGATCACAAAGTTCAGAAGATTCTGTTGTCAACATGTGTCGTCTATGTGACTTTTTAGAATTAATCTGGTTTCACATGTCAACAAAGAAGATCCCACGGACTGCGATGTCTTCTGGATTTTTTTTCTCACGAGATCCTAGAAACTCGTATATTTTTCAGAATTCCACGATAACTGAGAATTGTATTTTCTCCATAATTACAAGTCCGAGAATGCAATATTTCCACATGCAGGCCCGGCCCGGGTCTTCGAAGGCAAACTTTTGAAAGAGATTTTTTTTGAGAAAAAAATTATTGGTATTATTGGTAGTTGTTTATCAATTACTTTGCTTTCATGGATTGAGATATTTTAAGAAGGGAGCTAGGCTAAATTTTCCAAAACTTTGAAATGACCATTTTACAAAAATGTGTTCAACATCAACAGGAAAAAAGCACCCGCGCCAGGCCAGGGTCAGCCGGCCCGGAATGTTGATGATATGACGAAAYTATCTGGCTTCTTTCAAACCGAAGCCTCTTTTTTCACAGAGTTCGAAATTTTTCTAGAATTGATCAAAGTTCTTGGATCCTGTCCAAACTGCTTACTCATTTCCACCCACTTTTCTTTCAATGGCCTGAAGGCGTTTGACCTTCTTGGCGCTCCTTTTTTTCATCTTTCATTCCTTCTTCCAATTCCAATTTCTCATCAAGCTTCCTATCGGAAATTAAACTCTTCCATTCCTCCCCATCTACCGTAATCCATTATTCCATCCTCTTCTTTCCTTTCTTTTTTTGCTCATTCTTCTGACGGCTTTTCCCTTTCTTGTTCTTTAACATTTTCTTGTACCTATTCATCATTTTGTCAAGTAAGTACGCAGAGGATTTGTTCGTTTCACTTTTTATCTAGTCATCTGTTTTTTTTTCCTTTCCTACTTTTCCTATCCTTTTCTTTGCTTCTTCTTCGTTTATTCAAATTCCAAACATCGTGTTTTTTGAATACCTATCTGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>249 124 114 101 92 75 50 49 38 30 26 18 17 11 6</canonical_bands>
                <polymorphic_bands>249 163 124 101 92 75 50 38 30 26 18 17 11 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAGAATGCAATATTTCCAC</pcr_primer_p1>
		<pcr_primer_p2>AGAACTTTGATCAATTCTAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>351</pcr_amplicon_size>
		<canonical_amplicon>CGAGAATGCAATATTTCCACATGCAGGCCCGGCCCGGGTCTTCGAAGGCAAACTTTTGAAAGAGATTTTTTTTGAGAAAAAAATTATTGGTATTATTGGTAGTTGTTTATCAATTACTTTGCTTTCATGGATTGAGATATTTTAAGAAGGGAGCTAGGCTAAATTTTCCAAAACTTTGAAATGACCATTTTACAAAAATGTGTTCAACATCAACAGGAAAAAAGCACCCGCGCCAGGCCAGGGTCAGCCGGCCCGGAATGTTGATGATATGACGAAATTATCTGGCTTCTTTCAAACCGAAGCCTCTTTTTTCACAGAGTTCGAAATTTTTCTAGAATTGATCAAAGTTCT</canonical_amplicon>
		<polymorphic_amplicon>CGAGAATGCAATATTTCCACATGCAGGCCCGGCCCGGGTCTTCGAAGGCAAACTTTTGAAAGAGATTTTTTTTGAGAAAAAAATTATTGGTATTATTGGTAGTTGTTTATCAATTACTTTGCTTTCATGGATTGAGATATTTTAAGAAGGGAGCTAGGCTAAATTTTCCAAAACTTTGAAATGACCATTTTACAAAAATGTGTTCAACATCAACAGGAAAAAAGCACCCGCGCCAGGCCAGGGTCAGCCGGCCCGGAATGTTGATGATATGACGAAAYTATCTGGCTTCTTTCAAACCGAAGCCTCTTTTTTCACAGAGTTCGAAATTTTTCTAGAATTGATCAAAGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25848</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>236760</contig_pos>
        <strand></strand>
        <context>CCTCTTTTTT[C/A]ACAGAGTTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GATGATATGACGAAATTATCTGGCTTCTTTCAAACCGAAGCCTCTTTTTT</left_flank>
        <right_flank>ACAGAGTTCGAAATTTTTCTAGAATTGATCAAAGTTCTTGGATCCTGTCC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTCTGTTGTCAACATGTGTCGTCTATGTGACTTTTTAGAATTAATCTGGTTTCACATGTCAACAAAGAAGATCCCACGGACTGCGATGTCTTCTGGATTTTTTTTCTCACGAGATCCTAGAAACTCGTATATTTTTCAGAATTCCACGATAACTGAGAATTGTATTTTCTCCATAATTACAAGTCCGAGAATGCAATATTTCCACATGCAGGCCCGGCCCGGGTCTTCGAAGGCAAACTTTTGAAAGAGATTTTTTTTGAGAAAAAAATTATTGGTATTATTGGTAGTTGTTTATCAATTACTTTGCTTTCATGGATTGAGATATTTTAAGAAGGGAGCTAGGCTAAATTTTCCAAAACTTTGAAATGACCATTTTACAAAAATGTGTTCAACATCAACAGGAAAAAAGCACCCGCGCCAGGCCAGGGTCAGCCGGCCCGGAATGTTGATGATATGACGAAATTATCTGGCTTCTTTCAAACCGAAGCCTCTTTTTTCACAGAGTTCGAAATTTTTCTAGAATTGATCAAAGTTCTTGGATCCTGTCCAAACTGCTTACTCATTTCCACCCACTTTTCTTTCAATGGCCTGAAGGCGTTTGACCTTCTTGGCGCTCCTTTTTTTCATCTTTCATTCCTTCTTCCAATTCCAATTTCTCATCAAGCTTCCTATCGGAAATTAAACTCTTCCATTCCTCCCCATCTACCGTAATCCATTATTCCATCCTCTTCTTTCCTTTCTTTTTTTGCTCATTCTTCTGACGGCTTTTCCCTTTCTTGTTCTTTAACATTTTCTTGTACCTATTCATCATTTTGTCAAGTAAGTACGCAGAGGATTTGTTCGTTTCACTTTTTATCTAGTCATCTGTTTTTTTTTCCTTTCCTACTTTTCCTATCCTTTTCTTTGCTTCTTCTTCGTTTATTCAAATTCCAAACATCGTGTTTTTTGAATACCTATCTGATTAGGACGAATGCTTTCATCCTGGTTACATTCGACAT</canonical>
            <polymorphic>GATTCTGTTGTCAACATGTGTCGTCTATGTGACTTTTTAGAATTAATCTGGTTTCACATGTCAACAAAGAAGATCCCACGGACTGCGATGTCTTCTGGATTTTTTTTCTCACGAGATCCTAGAAACTCGTATATTTTTCAGAATTCCACGATAACTGAGAATTGTATTTTCTCCATAATTACAAGTCCGAGAATGCAATATTTCCACATGCAGGCCCGGCCCGGGTCTTCGAAGGCAAACTTTTGAAAGAGATTTTTTTTGAGAAAAAAATTATTGGTATTATTGGTAGTTGTTTATCAATTACTTTGCTTTCATGGATTGAGATATTTTAAGAAGGGAGCTAGGCTAAATTTTCCAAAACTTTGAAATGACCATTTTACAAAAATGTGTTCAACATCAACAGGAAAAAAGCACCCGCGCCAGGCCAGGGTCAGCCGGCCCGGAATGTTGATGATATGACGAAATTATCTGGCTTCTTTCAAACCGAAGCCTCTTTTTTMACAGAGTTCGAAATTTTTCTAGAATTGATCAAAGTTCTTGGATCCTGTCCAAACTGCTTACTCATTTCCACCCACTTTTCTTTCAATGGCCTGAAGGCGTTTGACCTTCTTGGCGCTCCTTTTTTTCATCTTTCATTCCTTCTTCCAATTCCAATTTCTCATCAAGCTTCCTATCGGAAATTAAACTCTTCCATTCCTCCCCATCTACCGTAATCCATTATTCCATCCTCTTCTTTCCTTTCTTTTTTTGCTCATTCTTCTGACGGCTTTTCCCTTTCTTGTTCTTTAACATTTTCTTGTACCTATTCATCATTTTGTCAAGTAAGTACGCAGAGGATTTGTTCGTTTCACTTTTTATCTAGTCATCTGTTTTTTTTTCCTTTCCTACTTTTCCTATCCTTTTCTTTGCTTCTTCTTCGTTTATTCAAATTCCAAACATCGTGTTTTTTGAATACCTATCTGATTAGGACGAATGCTTTCATCCTGGTTACATTCGACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>276 183 93 88 69 58 57 37 33 25 24 22 20 11 4</canonical_bands>
                <polymorphic_bands>276 183 157 93 58 57 37 33 25 24 22 20 11 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAGAATGCAATATTTCCAC</pcr_primer_p1>
		<pcr_primer_p2>AGTAAGCAGTTTGGACAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>CGAGAATGCAATATTTCCACATGCAGGCCCGGCCCGGGTCTTCGAAGGCAAACTTTTGAAAGAGATTTTTTTTGAGAAAAAAATTATTGGTATTATTGGTAGTTGTTTATCAATTACTTTGCTTTCATGGATTGAGATATTTTAAGAAGGGAGCTAGGCTAAATTTTCCAAAACTTTGAAATGACCATTTTACAAAAATGTGTTCAACATCAACAGGAAAAAAGCACCCGCGCCAGGCCAGGGTCAGCCGGCCCGGAATGTTGATGATATGACGAAATTATCTGGCTTCTTTCAAACCGAAGCCTCTTTTTTCACAGAGTTCGAAATTTTTCTAGAATTGATCAAAGTTCTTGGATCCTGTCCAAACTGCTTACT</canonical_amplicon>
		<polymorphic_amplicon>CGAGAATGCAATATTTCCACATGCAGGCCCGGCCCGGGTCTTCGAAGGCAAACTTTTGAAAGAGATTTTTTTTGAGAAAAAAATTATTGGTATTATTGGTAGTTGTTTATCAATTACTTTGCTTTCATGGATTGAGATATTTTAAGAAGGGAGCTAGGCTAAATTTTCCAAAACTTTGAAATGACCATTTTACAAAAATGTGTTCAACATCAACAGGAAAAAAGCACCCGCGCCAGGCCAGGGTCAGCCGGCCCGGAATGTTGATGATATGACGAAATTATCTGGCTTCTTTCAAACCGAAGCCTCTTTTTTMACAGAGTTCGAAATTTTTCTAGAATTGATCAAAGTTCTTGGATCCTGTCCAAACTGCTTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25849</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>242558</contig_pos>
        <strand></strand>
        <context>TAAAAAAATT[T/C]TACGGAAAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTGGAAAACTGAATAAACATATTTGAAATGTGTTGCAATTAAAAAAATT</left_flank>
        <right_flank>TACGGAAAGGAAGGGAGAAATTAGCCAGTCAAGGATACCGTAAACCTTTA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTATCAGCAGCAATCGTGGAGCACGCAGCTCTTGGCTTCGCCTTCGCCGTCCTTTCCCTTTTTGTTCTTGCCTTTGCGGTCATTGCAGTCGTTCTCCTGACGATTTCTCACTCATGTTGGTATAGATGTGGTTGGTTTCCATATTCAGTTCATTTAGTAGGAATTGTGTAAATTATTGTCAAGTGATCACTAACTAACTCTCGTATTGTTCGTCACACAATCTTGCCAATCATTCACTGCTTAACAAAAAAAAAACACTCAAAACTTAGGCCGATTTTTAGTTTCAGATGCAGAAGGAGATCCATTGATGGAGGACTACAACACTCTATTTTCGGAAGCAAATGTGGAAACGGGCGAACCAATCGAAACAGTTGTTGGATATACACCAAAGCATGCTGATATTGTGTGATCTCTTCATATTGTTTGGGATTCTTTGATTTCTTTTTTTTTGGAAAACTGAATAAACATATTTGAAATGTGTTGCAATTAAAAAAATTTTACGGAAAGGAAGGGAGAAATTAGCCAGTCAAGGATACCGTAAACCTTTAATAGAAGGGCAATTTTTAATTTTGAGTCCATTTATCTCAGTTACTGTCAAAGAAATCAACACATTGTCAACTGGTAAATTGCTTATCATATTATTAAGAACAATGTATCAGTTGACAACTTTTTCATATCCTTGACAGAAACCGGAAGAAATTGGCTCCATTATTACAAATGATTTATTCGCCCAATGGAATGAACAAACCACGGACTTCAAGATCCGAGGCCAGTTGTAACTAATATCTCTAACCTCAATATAACATCCGATAATAAAATATTTCTGTGAATTAGCATACAAAGAGAAAGAAGTCAGTCGGTTCCTTCAGGAAAATTGATATAAGAGAGATCAAATTTTTAAAGATTCACGTTTGAGTGAAAATAATCAGAAAAGGAAAATTCAATAAGAATTCACACATTAAAAACTCCGATAACAAAAAAAGCATTTTTCGATAGGA</canonical>
            <polymorphic>TGTTATCAGCAGCAATCGTGGAGCACGCAGCTCTTGGCTTCGCCTTCGCCGTCCTTTCCCTTTTTGTTCTTGCCTTTGCGGTCATTGCAGTCGTTCTCCTGACGATTTCTCACTCATGTTGGTATAGATGTGGTTGGTTTCCATATTCAGTTCATTTAGTAGGAATTGTGTAAATTATTGTCAAGTGATCACTAACTAACTCTCGTATTGTTCGTCACACAATCTTGCCAATCATTCACTGCTTAACAAAAAAAAAACACTCAAAACTTAGGCCGATTTTTAGTTTCAGATGCAGAAGGAGATCCATTGATGGAGGACTACAACACTCTATTTTCGGAAGCAAATGTGGAAACGGGCGAACCAATCGAAACAGTTGTTGGATATACACCAAAGCATGCTGATATTGTGTGATCTCTTCATATTGTTTGGGATTCTTTGATTTCTTTTTTTTTGGAAAACTGAATAAACATATTTGAAATGTGTTGCAATTAAAAAAATTYTACGGAAAGGAAGGGAGAAATTAGCCAGTCAAGGATACCGTAAACCTTTAATAGAAGGGCAATTTTTAATTTTGAGTCCATTTATCTCAGTTACTGTCAAAGAAATCAACACATTGTCAACTGGTAAATTGCTTATCATATTATTAAGAACAATGTATCAGTTGACAACTTTTTCATATCCTTGACAGAAACCGGAAGAAATTGGCTCCATTATTACAAATGATTTATTCGCCCAATGGAATGAACAAACCACGGACTTCAAGATCCGAGGCCAGTTGTAACTAATATCTCTAACCTCAATATAACATCCGATAATAAAATATTTCTGTGAATTAGCATACAAAGAGAAAGAAGTCAGTCGGTTCCTTCAGGAAAATTGATATAAGAGAGATCAAATTTTTAAAGATTCACGTTTGAGTGAAAATAATCAGAAAAGGAAAATTCAATAAGAATTCACACATTAAAAACTCCGATAACAAAAAAAGCATTTTTCGATAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>495 399 50 45 11</canonical_bands>
                <polymorphic_bands>894 50 45 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGGAAAACTGAATAAACAT</pcr_primer_p1>
		<pcr_primer_p2>GGCGAATAAATCATTTGTAATAA</pcr_primer_p2>
		<pcr_amplicon_size>286</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGGAAAACTGAATAAACATATTTGAAATGTGTTGCAATTAAAAAAATTTTACGGAAAGGAAGGGAGAAATTAGCCAGTCAAGGATACCGTAAACCTTTAATAGAAGGGCAATTTTTAATTTTGAGTCCATTTATCTCAGTTACTGTCAAAGAAATCAACACATTGTCAACTGGTAAATTGCTTATCATATTATTAAGAACAATGTATCAGTTGACAACTTTTTCATATCCTTGACAGAAACCGGAAGAAATTGGCTCCATTATTACAAATGATTTATTCGCC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGGAAAACTGAATAAACATATTTGAAATGTGTTGCAATTAAAAAAATTYTACGGAAAGGAAGGGAGAAATTAGCCAGTCAAGGATACCGTAAACCTTTAATAGAAGGGCAATTTTTAATTTTGAGTCCATTTATCTCAGTTACTGTCAAAGAAATCAACACATTGTCAACTGGTAAATTGCTTATCATATTATTAAGAACAATGTATCAGTTGACAACTTTTTCATATCCTTGACAGAAACCGGAAGAAATTGGCTCCATTATTACAAATGATTTATTCGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25850</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>242637</contig_pos>
        <strand></strand>
        <context>attttgagtc[C/T]atttatctca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAAGGATACCGTAAACCTTTAATAGAAGGGCAATTTTTAATTTTGAGTC</left_flank>
        <right_flank>ATTTATCTCAGTTACTGTCAAAGAAATCAACACATTGTCAACTGGTAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTCATTGCAGTCGTTCTCCTGACGATTTCTCACTCATGTTGGTATAGATGTGGTTGGTTTCCATATTCAGTTCATTTAGTAGGAATTGTGTAAATTATTGTCAAGTGATCACTAACTAACTCTCGTATTGTTCGTCACACAATCTTGCCAATCATTCACTGCTTAACAAAAAAAAAACACTCAAAACTTAGGCCGATTTTTAGTTTCAGATGCAGAAGGAGATCCATTGATGGAGGACTACAACACTCTATTTTCGGAAGCAAATGTGGAAACGGGCGAACCAATCGAAACAGTTGTTGGATATACACCAAAGCATGCTGATATTGTGTGATCTCTTCATATTGTTTGGGATTCTTTGATTTCTTTTTTTTTGGAAAACTGAATAAACATATTTGAAATGTGTTGCAATTAAAAAAATTTTACGGAAAGGAAGGGAGAAATTAGCCAGTCAAGGATACCGTAAACCTTTAATAGAAGGGCAATTTTTAATTTTGAGTCCATTTATCTCAGTTACTGTCAAAGAAATCAACACATTGTCAACTGGTAAATTGCTTATCATATTATTAAGAACAATGTATCAGTTGACAACTTTTTCATATCCTTGACAGAAACCGGAAGAAATTGGCTCCATTATTACAAATGATTTATTCGCCCAATGGAATGAACAAACCACGGACTTCAAGATCCGAGGCCAGTTGTAACTAATATCTCTAACCTCAATATAACATCCGATAATAAAATATTTCTGTGAATTAGCATACAAAGAGAAAGAAGTCAGTCGGTTCCTTCAGGAAAATTGATATAAGAGAGATCAAATTTTTAAAGATTCACGTTTGAGTGAAAATAATCAGAAAAGGAAAATTCAATAAGAATTCACACATTAAAAACTCCGATAACAAAAAAAGCATTTTTCGATAGGAAAAATCTGGGTTTTCATGGAAAATCCAAATTTTTAAAGTTTATTTTTACAAGATTCAAGTCGCGCACATTAAATAGAAT</canonical>
            <polymorphic>GGTCATTGCAGTCGTTCTCCTGACGATTTCTCACTCATGTTGGTATAGATGTGGTTGGTTTCCATATTCAGTTCATTTAGTAGGAATTGTGTAAATTATTGTCAAGTGATCACTAACTAACTCTCGTATTGTTCGTCACACAATCTTGCCAATCATTCACTGCTTAACAAAAAAAAAACACTCAAAACTTAGGCCGATTTTTAGTTTCAGATGCAGAAGGAGATCCATTGATGGAGGACTACAACACTCTATTTTCGGAAGCAAATGTGGAAACGGGCGAACCAATCGAAACAGTTGTTGGATATACACCAAAGCATGCTGATATTGTGTGATCTCTTCATATTGTTTGGGATTCTTTGATTTCTTTTTTTTTGGAAAACTGAATAAACATATTTGAAATGTGTTGCAATTAAAAAAATTTTACGGAAAGGAAGGGAGAAATTAGCCAGTCAAGGATACCGTAAACCTTTAATAGAAGGGCAATTTTTAATTTTGAGTCYATTTATCTCAGTTACTGTCAAAGAAATCAACACATTGTCAACTGGTAAATTGCTTATCATATTATTAAGAACAATGTATCAGTTGACAACTTTTTCATATCCTTGACAGAAACCGGAAGAAATTGGCTCCATTATTACAAATGATTTATTCGCCCAATGGAATGAACAAACCACGGACTTCAAGATCCGAGGCCAGTTGTAACTAATATCTCTAACCTCAATATAACATCCGATAATAAAATATTTCTGTGAATTAGCATACAAAGAGAAAGAAGTCAGTCGGTTCCTTCAGGAAAATTGATATAAGAGAGATCAAATTTTTAAAGATTCACGTTTGAGTGAAAATAATCAGAAAAGGAAAATTCAATAAGAATTCACACATTAAAAACTCCGATAACAAAAAAAGCATTTTTCGATAGGAAAAATCTGGGTTTTCATGGAAAATCCAAATTTTTAAAGTTTATTTTTACAAGATTCAAGTCGCGCACATTAAATAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAGGAAGGGAGAAATTAG</pcr_primer_p1>
		<pcr_primer_p2>GGCGAATAAATCATTTGTAATAA</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>GGAAAGGAAGGGAGAAATTAGCCAGTCAAGGATACCGTAAACCTTTAATAGAAGGGCAATTTTTAATTTTGAGTCCATTTATCTCAGTTACTGTCAAAGAAATCAACACATTGTCAACTGGTAAATTGCTTATCATATTATTAAGAACAATGTATCAGTTGACAACTTTTTCATATCCTTGACAGAAACCGGAAGAAATTGGCTCCATTATTACAAATGATTTATTCGCC</canonical_amplicon>
		<polymorphic_amplicon>GGAAAGGAAGGGAGAAATTAGCCAGTCAAGGATACCGTAAACCTTTAATAGAAGGGCAATTTTTAATTTTGAGTCYATTTATCTCAGTTACTGTCAAAGAAATCAACACATTGTCAACTGGTAAATTGCTTATCATATTATTAAGAACAATGTATCAGTTGACAACTTTTTCATATCCTTGACAGAAACCGGAAGAAATTGGCTCCATTATTACAAATGATTTATTCGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25851</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>242692</contig_pos>
        <strand></strand>
        <context>gtaaattgct[T/A]atcatattat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATCTCAGTTACTGTCAAAGAAATCAACACATTGTCAACTGGTAAATTGCT</left_flank>
        <right_flank>ATCATATTATTAAGAACAATGTATCAGTTGACAACTTTTTCATATCCTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTTTCCATATTCAGTTCATTTAGTAGGAATTGTGTAAATTATTGTCAAGTGATCACTAACTAACTCTCGTATTGTTCGTCACACAATCTTGCCAATCATTCACTGCTTAACAAAAAAAAAACACTCAAAACTTAGGCCGATTTTTAGTTTCAGATGCAGAAGGAGATCCATTGATGGAGGACTACAACACTCTATTTTCGGAAGCAAATGTGGAAACGGGCGAACCAATCGAAACAGTTGTTGGATATACACCAAAGCATGCTGATATTGTGTGATCTCTTCATATTGTTTGGGATTCTTTGATTTCTTTTTTTTTGGAAAACTGAATAAACATATTTGAAATGTGTTGCAATTAAAAAAATTTTACGGAAAGGAAGGGAGAAATTAGCCAGTCAAGGATACCGTAAACCTTTAATAGAAGGGCAATTTTTAATTTTGAGTCCATTTATCTCAGTTACTGTCAAAGAAATCAACACATTGTCAACTGGTAAATTGCTTATCATATTATTAAGAACAATGTATCAGTTGACAACTTTTTCATATCCTTGACAGAAACCGGAAGAAATTGGCTCCATTATTACAAATGATTTATTCGCCCAATGGAATGAACAAACCACGGACTTCAAGATCCGAGGCCAGTTGTAACTAATATCTCTAACCTCAATATAACATCCGATAATAAAATATTTCTGTGAATTAGCATACAAAGAGAAAGAAGTCAGTCGGTTCCTTCAGGAAAATTGATATAAGAGAGATCAAATTTTTAAAGATTCACGTTTGAGTGAAAATAATCAGAAAAGGAAAATTCAATAAGAATTCACACATTAAAAACTCCGATAACAAAAAAAGCATTTTTCGATAGGAAAAATCTGGGTTTTCATGGAAAATCCAAATTTTTAAAGTTTATTTTTACAAGATTCAAGTCGCGCACATTAAATAGAATTGAATGATCAATTCAAGTTCTGTAATGTTCGAATCGGTTATTTGAAACTCCAACT</canonical>
            <polymorphic>TGGTTTCCATATTCAGTTCATTTAGTAGGAATTGTGTAAATTATTGTCAAGTGATCACTAACTAACTCTCGTATTGTTCGTCACACAATCTTGCCAATCATTCACTGCTTAACAAAAAAAAAACACTCAAAACTTAGGCCGATTTTTAGTTTCAGATGCAGAAGGAGATCCATTGATGGAGGACTACAACACTCTATTTTCGGAAGCAAATGTGGAAACGGGCGAACCAATCGAAACAGTTGTTGGATATACACCAAAGCATGCTGATATTGTGTGATCTCTTCATATTGTTTGGGATTCTTTGATTTCTTTTTTTTTGGAAAACTGAATAAACATATTTGAAATGTGTTGCAATTAAAAAAATTTTACGGAAAGGAAGGGAGAAATTAGCCAGTCAAGGATACCGTAAACCTTTAATAGAAGGGCAATTTTTAATTTTGAGTCCATTTATCTCAGTTACTGTCAAAGAAATCAACACATTGTCAACTGGTAAATTGCTWATCATATTATTAAGAACAATGTATCAGTTGACAACTTTTTCATATCCTTGACAGAAACCGGAAGAAATTGGCTCCATTATTACAAATGATTTATTCGCCCAATGGAATGAACAAACCACGGACTTCAAGATCCGAGGCCAGTTGTAACTAATATCTCTAACCTCAATATAACATCCGATAATAAAATATTTCTGTGAATTAGCATACAAAGAGAAAGAAGTCAGTCGGTTCCTTCAGGAAAATTGATATAAGAGAGATCAAATTTTTAAAGATTCACGTTTGAGTGAAAATAATCAGAAAAGGAAAATTCAATAAGAATTCACACATTAAAAACTCCGATAACAAAAAAAGCATTTTTCGATAGGAAAAATCTGGGTTTTCATGGAAAATCCAAATTTTTAAAGTTTATTTTTACAAGATTCAAGTCGCGCACATTAAATAGAATTGAATGATCAATTCAAGTTCTGTAATGTTCGAATCGGTTATTTGAAACTCCAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAGGAAGGGAGAAATTAG</pcr_primer_p1>
		<pcr_primer_p2>GGCGAATAAATCATTTGTAATAA</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>GGAAAGGAAGGGAGAAATTAGCCAGTCAAGGATACCGTAAACCTTTAATAGAAGGGCAATTTTTAATTTTGAGTCCATTTATCTCAGTTACTGTCAAAGAAATCAACACATTGTCAACTGGTAAATTGCTTATCATATTATTAAGAACAATGTATCAGTTGACAACTTTTTCATATCCTTGACAGAAACCGGAAGAAATTGGCTCCATTATTACAAATGATTTATTCGCC</canonical_amplicon>
		<polymorphic_amplicon>GGAAAGGAAGGGAGAAATTAGCCAGTCAAGGATACCGTAAACCTTTAATAGAAGGGCAATTTTTAATTTTGAGTCCATTTATCTCAGTTACTGTCAAAGAAATCAACACATTGTCAACTGGTAAATTGCTWATCATATTATTAAGAACAATGTATCAGTTGACAACTTTTTCATATCCTTGACAGAAACCGGAAGAAATTGGCTCCATTATTACAAATGATTTATTCGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25852</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>253731</contig_pos>
        <strand>+</strand>
        <context>CATTGGAGAG[G/T]GTCCATCGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGCAGCCACTGAAACTTTGGCTAATGTCGATGGAGGTGACATTGGAGAG</left_flank>
        <right_flank>GTCCATCGTGCAAACAACTGGTTCACATCGACCACAACATCAACGAATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGCAGAAAAGTCGTTTTGAACTGAAACGCGATTTGTTCCAACCAGCATTTAACAGTATGATGTTGGCTACTCCAGCTCAAGTGATGAGTGCTGAGAAGATGGCTTCAATCCTTCGTGACGAGGCAATGAACACCGAAGAACAGGAAGAGAAATTTGAACGAATCGACTTCGAGACCGATGATTTTGATTTCGAAGACGCTGACGAGGAGAAGGAACCAGCTCTTGAGAAGCTGAAATGTGCCACCTGCGACTGCACCAAAAACTCGGAACTCTTTGAGTTGGATGACAGCTGGCAATGCCGTGAATGTCTTTGCAAGCACATCATCGACCAGATCCGTGCCAAATGCATTCCATTAGAAATTCCATTCGTTCTCGGAGAGGGACAATCTGCTTATGACATCCTTCCAGCTATTATCCCACTTCCACTTCTCAACTTTTACACCAAAATCGCAGCCACTGAAACTTTGGCTAATGTCGATGGAGGTGACATTGGAGAGTGTCCATCGTGCAAACAACTGGTTCACATCGACCACAACATCAACGAATTCAAGACTTCAGCTTGCTATTCTTGCGGAATCCATTGGTGTGCAAAATGCGAACGTGAGCCACATTTCCCAATGACTTGCTCATCTTATGCCTCATGGATCGAGAAGTGGGAACAGGAGTACGAACTTCATGTTCTTGAAAAGACCGATTTCCTAAAACGTATCAAGTGTGCTTGTGGATACGTTATGAAAGTTCGTAAAGAAGCTTCTCGAGCTGAATGTGGAGGATGTGGACGGGTATTCTGTCCAAAAACTCTTGAGATGCTCGAAGTTGCCTATTGGTCTCGTGACGAGAAGACTGGAGCAGCAGTCAGAAGACTGGAGACATCGACTGTTTTGCCTGCTATGTGTGTTGAGACGATTGCCGCTTCGAAAAACATCAAGAAAGAGTTCTCTGATGTGTGTGGAGAAGCACGCAAACTTCGATTCTCTGTTTCCAAGAAAACTGAGTTT</canonical>
            <polymorphic>TTCGCAGAAAAGTCGTTTTGAACTGAAACGCGATTTGTTCCAACCAGCATTTAACAGTATGATGTTGGCTACTCCAGCTCAAGTGATGAGTGCTGAGAAGATGGCTTCAATCCTTCGTGACGAGGCAATGAACACCGAAGAACAGGAAGAGAAATTTGAACGAATCGACTTCGAGACCGATGATTTTGATTTCGAAGACGCTGACGAGGAGAAGGAACCAGCTCTTGAGAAGCTGAAATGTGCCACCTGCGACTGCACCAAAAACTCGGAACTCTTTGAGTTGGATGACAGCTGGCAATGCCGTGAATGTCTTTGCAAGCACATCATCGACCAGATCCGTGCCAAATGCATTCCATTAGAAATTCCATTCGTTCTCGGAGAGGGACAATCTGCTTATGACATCCTTCCAGCTATTATCCCACTTCCACTTCTCAACTTTTACACCAAAATCGCAGCCACTGAAACTTTGGCTAATGTCGATGGAGGTGACATTGGAGAGKGTCCATCGTGCAAACAACTGGTTCACATCGACCACAACATCAACGAATTCAAGACTTCAGCTTGCTATTCTTGCGGAATCCATTGGTGTGCAAAATGCGAACGTGAGCCACATTTCCCAATGACTTGCTCATCTTATGCCTCATGGATCGAGAAGTGGGAACAGGAGTACGAACTTCATGTTCTTGAAAAGACCGATTTCCTAAAACGTATCAAGTGTGCTTGTGGATACGTTATGAAAGTTCGTAAAGAAGCTTCTCGAGCTGAATGTGGAGGATGTGGACGGGTATTCTGTCCAAAAACTCTTGAGATGCTCGAAGTTGCCTATTGGTCTCGTGACGAGAAGACTGGAGCAGCAGTCAGAAGACTGGAGACATCGACTGTTTTGCCTGCTATGTGTGTTGAGACGATTGCCGCTTCGAAAAACATCAAGAAAGAGTTCTCTGATGTGTGTGGAGAAGCACGCAAACTTCGATTCTCTGTTTCCAAGAAAACTGAGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>108 85 80 61 60 57 54 50 48 47 45 39 30 27 20 16 16 15 15 15 15 13 12 9 9 9 8 7 6 6 5 3 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>108 85 80 61 60 57 54 50 48 47 45 39 30 27 22 20 16 16 15 15 15 15 12 9 9 8 7 6 6 5 3 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTCAACTTTTACACCAAAATC</pcr_primer_p1>
		<pcr_primer_p2>CATGAAGTTCGTACTCCTGTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTCTCAACTTTTACACCAAAATCGCAGCCACTGAAACTTTGGCTAATGTCGATGGAGGTGACATTGGAGAGTGTCCATCGTGCAAACAACTGGTTCACATCGACCACAACATCAACGAATTCAAGACTTCAGCTTGCTATTCTTGCGGAATCCATTGGTGTGCAAAATGCGAACGTGAGCCACATTTCCCAATGACTTGCTCATCTTATGCCTCATGGATCGAGAAGTGGGAACAGGAGTACGAACTTCATG</canonical_amplicon>
		<polymorphic_amplicon>TTCTCAACTTTTACACCAAAATCGCAGCCACTGAAACTTTGGCTAATGTCGATGGAGGTGACATTGGAGAGKGTCCATCGTGCAAACAACTGGTTCACATCGACCACAACATCAACGAATTCAAGACTTCAGCTTGCTATTCTTGCGGAATCCATTGGTGTGCAAAATGCGAACGTGAGCCACATTTCCCAATGACTTGCTCATCTTATGCCTCATGGATCGAGAAGTGGGAACAGGAGTACGAACTTCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25853</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>329700</contig_pos>
        <strand>+</strand>
        <context>GTGATGTGGA[A/T]CGGAGTAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCGTCATCATCGTTGTTGAGTTTCTCAAAAATTCCTGTCGGTGATGTGGA</left_flank>
        <right_flank>CGGAGTAAATCCGCACTTCTTTCTAGCTGATCCAAGCTTCCAGAAACGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAATAACAAATGTGTCAAGAAGTGATGGAACTAAATTTGTGAGACGGTCTGAAAATTACAGGATCAGAATAGGATTAAAAGAAAAGTAGTTTACCAATGACGGTAGCCGCGAGGAGAACGATGTGTAGATTGTCGTGGATTAGTCGACGAGTGCATTTCCGAAGTCTGAAATATTACAAAGGTTGTTTCATACTATACAATCGTATTTACTTTCTCTCGGCAGAACTGTTGCCTTTCGTTTCGTCCTTTTGACTATTATCCTCGTCCAATTGCTCGTTTTCTTGAGCCAGTATCATATTGTAGGCTACCATTTTTTCGCGCCAATCTCGAATCTCTGTTGCAAATCGACGTCTTGCCAGGAATCCACGCACCACTTTTTGGATCGTAACAGCTGATTTACGCTGCTTTGTTTGTAGCTCTTCTAAAGCCTTTTTTGCCAATTTTTCAGCGTCATCATCGTTGTTGAGTTTCTCAAAAATTCCTGTCGGTGATGTGGAACGGAGTAAATCCGCACTTCTTTCTAGCTGATCCAAGCTTCCAGAAACGCTGTCATGCTGAATTACGGCGTTATCGAGCCCAGCATCTGGTCTATCATTTACATCGTTTTCATTCATATGGATTTCATCTGTTGTAGAATATTCGATGAATGCGTTTTCCTTTTCTGCTAACGCTTTTCTCTCAATGGCGCCCAATCGTTTTGCCTGCAACTTTTCATTGGGATTATTGAATTCTACTCACTTTTGCTACTTACAACTTCTTCTTGCTTTCGTTTCAGCTCTCGTGTCTCTCGAAGAATCTTCCTCAATTCAGGTGTGCTCGCCGTGTCGCTTTGATCCGGGATCACCAGATTCAACTGATTGTTTAGAACGTAGCGTTTCTGATTTTCAATCATCTCGCGGAACATTGCTTCGCTTTTCTTTTGCTCCTCTGTCATCTCGTAGTCCACGAGGGATGATGATGTACTTTGGGAAGAAGTCGGCTGGGTATGATCCATTGGG</canonical>
            <polymorphic>CTCAATAACAAATGTGTCAAGAAGTGATGGAACTAAATTTGTGAGACGGTCTGAAAATTACAGGATCAGAATAGGATTAAAAGAAAAGTAGTTTACCAATGACGGTAGCCGCGAGGAGAACGATGTGTAGATTGTCGTGGATTAGTCGACGAGTGCATTTCCGAAGTCTGAAATATTACAAAGGTTGTTTCATACTATACAATCGTATTTACTTTCTCTCGGCAGAACTGTTGCCTTTCGTTTCGTCCTTTTGACTATTATCCTCGTCCAATTGCTCGTTTTCTTGAGCCAGTATCATATTGTAGGCTACCATTTTTTCGCGCCAATCTCGAATCTCTGTTGCAAATCGACGTCTTGCCAGGAATCCACGCACCACTTTTTGGATCGTAACAGCTGATTTACGCTGCTTTGTTTGTAGCTCTTCTAAAGCCTTTTTTGCCAATTTTTCAGCGTCATCATCGTTGTTGAGTTTCTCAAAAATTCCTGTCGGTGATGTGGAWCGGAGTAAATCCGCACTTCTTTCTAGCTGATCCAAGCTTCCAGAAACGCTGTCATGCTGAATTACGGCGTTATCGAGCCCAGCATCTGGTCTATCATTTACATCGTTTTCATTCATATGGATTTCATCTGTTGTAGAATATTCGATGAATGCGTTTTCCTTTTCTGCTAACGCTTTTCTCTCAATGGCGCCCAATCGTTTTGCCTGCAACTTTTCATTGGGATTATTGAATTCTACTCACTTTTGCTACTTACAACTTCTTCTTGCTTTCGTTTCAGCTCTCGTGTCTCTCGAAGAATCTTCCTCAATTCAGGTGTGCTCGCCGTGTCGCTTTGATCCGGGATCACCAGATTCAACTGATTGTTTAGAACGTAGCGTTTCTGATTTTCAATCATCTCGCGGAACATTGCTTCGCTTTTCTTTTGCTCCTCTGTCATCTCGTAGTCCACGAGGGATGATGATGTACTTTGGGAAGAAGTCGGCTGGGTATGATCCATTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTACGCTGCTTTGTTTGTA</pcr_primer_p1>
		<pcr_primer_p2>TCGAATATTCTACAACAGATGAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTACGCTGCTTTGTTTGTAGCTCTTCTAAAGCCTTTTTTGCCAATTTTTCAGCGTCATCATCGTTGTTGAGTTTCTCAAAAATTCCTGTCGGTGATGTGGAACGGAGTAAATCCGCACTTCTTTCTAGCTGATCCAAGCTTCCAGAAACGCTGTCATGCTGAATTACGGCGTTATCGAGCCCAGCATCTGGTCTATCATTTACATCGTTTTCATTCATATGGATTTCATCTGTTGTAGAATATTCGA</canonical_amplicon>
		<polymorphic_amplicon>ATTTACGCTGCTTTGTTTGTAGCTCTTCTAAAGCCTTTTTTGCCAATTTTTCAGCGTCATCATCGTTGTTGAGTTTCTCAAAAATTCCTGTCGGTGATGTGGAWCGGAGTAAATCCGCACTTCTTTCTAGCTGATCCAAGCTTCCAGAAACGCTGTCATGCTGAATTACGGCGTTATCGAGCCCAGCATCTGGTCTATCATTTACATCGTTTTCATTCATATGGATTTCATCTGTTGTAGAATATTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25854</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>418965</contig_pos>
        <strand></strand>
        <context>ACTCtttttt[C/T]ttttttttgt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGATTGAAAACAATATAAACTCTTGAAAATTACTTCTCACTCTTTTTT</left_flank>
        <right_flank>TTTTTTTTGTTTTTTCTTCTTTCTCTTTTCCGTCCATTTTCTAACAAAAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACTTTTTTCGCACTTCTTTTTCTTTTTTGCACACAATGGGAAATAATTGAATTCTGTTTGGAAGCGGTGGTCCGAGAAGGTACAATTGTTTTGTTTCTTTTTTATTTGGGGGAAGCTTGGGTCCTCAGAATCTTGTTTTTCTGTCATTTCGGTTGAGAAAGTATTGTTGTTTTTATTTGAGAAGTTTAGCTACAATCTGATAGTTGTGTACGTCATTTTCAAGTCAGAATCTGAGTGGGATCTCAAAGTACGACCATTTTCAATTTTGATTCATTGAGCTATAGTGTCCTGACGTTTTTGAATGGACGACTCCAAGAAAAAACACTTGAAAAATTGCTAGGAGCCAATTTTGTATATAGGGGAAAACGAATACACAATGCAGAAAGAACAAAAAAAAGATCAAAACGCTTCCTGAACAATTTTCCTGTGAAGTGAAATTCGATACCATCAGATTGAAAACAATATAAACTCTTGAAAATTACTTCTCACTCTTTTTTCTTTTTTTTGTTTTTTCTTCTTTCTCTTTTCCGTCCATTTTCTAACAAAAGTTCGTTTTTATTTCTCTTCCACCTTCCCACGATTTCCTATTTTCGTAGCTCAACTTTTCTTCAGTTTTCAGTTTCAATTCCTTCAGTTTCGTTCTCATAATTTTCATATTTTTGCATATTCCATGAACACACCTACCTCTCATTTCCTTTTTTTTTGTCTTTCTCTTCTTTTTCTTCTTCGCCTTTTTTGCAACAACGCTTCCCCGGATACGGCTCATTTTTCGACAACGTCGACATACATACATACACACTTTTCTTTTCTCTTATTTCCACGTTTCTTCCGTTCCTGACACATTTTGGAATTATTTTCAGAAAGAGCACGTCTTCAGAATGGTGGAACGAACATACAACTCAATCAGAACACATAAACAGACACGATTATCACAAAGGCCCATTTCCAAGAAAACAAGTTCAACGATGCGGGAAACATTTGGGTTAGATTCTGAAAAG</canonical>
            <polymorphic>ACACTTTTTTCGCACTTCTTTTTCTTTTTTGCACACAATGGGAAATAATTGAATTCTGTTTGGAAGCGGTGGTCCGAGAAGGTACAATTGTTTTGTTTCTTTTTTATTTGGGGGAAGCTTGGGTCCTCAGAATCTTGTTTTTCTGTCATTTCGGTTGAGAAAGTATTGTTGTTTTTATTTGAGAAGTTTAGCTACAATCTGATAGTTGTGTACGTCATTTTCAAGTCAGAATCTGAGTGGGATCTCAAAGTACGACCATTTTCAATTTTGATTCATTGAGCTATAGTGTCCTGACGTTTTTGAATGGACGACTCCAAGAAAAAACACTTGAAAAATTGCTAGGAGCCAATTTTGTATATAGGGGAAAACGAATACACAATGCAGAAAGAACAAAAAAAAGATCAAAACGCTTCCTGAACAATTTTCCTGTGAAGTGAAATTCGATACCATCAGATTGAAAACAATATAAACTCTTGAAAATTACTTCTCACTCTTTTTTYTTTTTTTTGTTTTTTCTTCTTTCTCTTTTCCGTCCATTTTCTAACAAAAGTTCGTTTTTATTTCTCTTCCACCTTCCCACGATTTCCTATTTTCGTAGCTCAACTTTTCTTCAGTTTTCAGTTTCAATTCCTTCAGTTTCGTTCTCATAATTTTCATATTTTTGCATATTCCATGAACACACCTACCTCTCATTTCCTTTTTTTTTGTCTTTCTCTTCTTTTTCTTCTTCGCCTTTTTTGCAACAACGCTTCCCCGGATACGGCTCATTTTTCGACAACGTCGACATACATACATACACACTTTTCTTTTCTCTTATTTCCACGTTTCTTCCGTTCCTGACACATTTTGGAATTATTTTCAGAAAGAGCACGTCTTCAGAATGGTGGAACGAACATACAACTCAATCAGAACACATAAACAGACACGATTATCACAAAGGCCCATTTCCAAGAAAACAAGTTCAACGATGCGGGAAACATTTGGGTTAGATTCTGAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACACAATGCAGAAAGAACAA</pcr_primer_p1>
		<pcr_primer_p2>CTGAAAACTGAAGAAAAGTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATACACAATGCAGAAAGAACAAAAAAAAGATCAAAACGCTTCCTGAACAATTTTCCTGTGAAGTGAAATTCGATACCATCAGATTGAAAACAATATAAACTCTTGAAAATTACTTCTCACTCTTTTTTCTTTTTTTTGTTTTTTCTTCTTTCTCTTTTCCGTCCATTTTCTAACAAAAGTTCGTTTTTATTTCTCTTCCACCTTCCCACGATTTCCTATTTTCGTAGCTCAACTTTTCTTCAGTTTTCAG</canonical_amplicon>
		<polymorphic_amplicon>ATACACAATGCAGAAAGAACAAAAAAAAGATCAAAACGCTTCCTGAACAATTTTCCTGTGAAGTGAAATTCGATACCATCAGATTGAAAACAATATAAACTCTTGAAAATTACTTCTCACTCTTTTTTYTTTTTTTTGTTTTTTCTTCTTTCTCTTTTCCGTCCATTTTCTAACAAAAGTTCGTTTTTATTTCTCTTCCACCTTCCCACGATTTCCTATTTTCGTAGCTCAACTTTTCTTCAGTTTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25855</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>419087</contig_pos>
        <strand>+</strand>
        <context>CAGTTTTCAG[G/T]TTCAATTCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCTTCCCACGATTTCCTATTTTCGTAGCTCAACTTTTCTTCAGTTTTCAG</left_flank>
        <right_flank>TTCAATTCCTTCAGTTTCGTTCTCATAATTTTCATATTTTTGCATATTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCTCAGAATCTTGTTTTTCTGTCATTTCGGTTGAGAAAGTATTGTTGTTTTTATTTGAGAAGTTTAGCTACAATCTGATAGTTGTGTACGTCATTTTCAAGTCAGAATCTGAGTGGGATCTCAAAGTACGACCATTTTCAATTTTGATTCATTGAGCTATAGTGTCCTGACGTTTTTGAATGGACGACTCCAAGAAAAAACACTTGAAAAATTGCTAGGAGCCAATTTTGTATATAGGGGAAAACGAATACACAATGCAGAAAGAACAAAAAAAAGATCAAAACGCTTCCTGAACAATTTTCCTGTGAAGTGAAATTCGATACCATCAGATTGAAAACAATATAAACTCTTGAAAATTACTTCTCACTCTTTTTTCTTTTTTTTGTTTTTTCTTCTTTCTCTTTTCCGTCCATTTTCTAACAAAAGTTCGTTTTTATTTCTCTTCCACCTTCCCACGATTTCCTATTTTCGTAGCTCAACTTTTCTTCAGTTTTCAGTTTCAATTCCTTCAGTTTCGTTCTCATAATTTTCATATTTTTGCATATTCCATGAACACACCTACCTCTCATTTCCTTTTTTTTTGTCTTTCTCTTCTTTTTCTTCTTCGCCTTTTTTGCAACAACGCTTCCCCGGATACGGCTCATTTTTCGACAACGTCGACATACATACATACACACTTTTCTTTTCTCTTATTTCCACGTTTCTTCCGTTCCTGACACATTTTGGAATTATTTTCAGAAAGAGCACGTCTTCAGAATGGTGGAACGAACATACAACTCAATCAGAACACATAAACAGACACGATTATCACAAAGGCCCATTTCCAAGAAAACAAGTTCAACGATGCGGGAAACATTTGGGTTAGATTCTGAAAAGAATTCTGAAAATGTATTTTATTTCAGAAGTCAGGTTCTTCGAGAACTTGAAATGAAGAATCGAATGGAATGTCCGTCGCTCGATGAAATTTTTTCATTTTATCATTTTCCATGGGAAAAGTT</canonical>
            <polymorphic>GTCCTCAGAATCTTGTTTTTCTGTCATTTCGGTTGAGAAAGTATTGTTGTTTTTATTTGAGAAGTTTAGCTACAATCTGATAGTTGTGTACGTCATTTTCAAGTCAGAATCTGAGTGGGATCTCAAAGTACGACCATTTTCAATTTTGATTCATTGAGCTATAGTGTCCTGACGTTTTTGAATGGACGACTCCAAGAAAAAACACTTGAAAAATTGCTAGGAGCCAATTTTGTATATAGGGGAAAACGAATACACAATGCAGAAAGAACAAAAAAAAGATCAAAACGCTTCCTGAACAATTTTCCTGTGAAGTGAAATTCGATACCATCAGATTGAAAACAATATAAACTCTTGAAAATTACTTCTCACTCTTTTTTCTTTTTTTTGTTTTTTCTTCTTTCTCTTTTCCGTCCATTTTCTAACAAAAGTTCGTTTTTATTTCTCTTCCACCTTCCCACGATTTCCTATTTTCGTAGCTCAACTTTTCTTCAGTTTTCAGKTTCAATTCCTTCAGTTTCGTTCTCATAATTTTCATATTTTTGCATATTCCATGAACACACCTACCTCTCATTTCCTTTTTTTTTGTCTTTCTCTTCTTTTTCTTCTTCGCCTTTTTTGCAACAACGCTTCCCCGGATACGGCTCATTTTTCGACAACGTCGACATACATACATACACACTTTTCTTTTCTCTTATTTCCACGTTTCTTCCGTTCCTGACACATTTTGGAATTATTTTCAGAAAGAGCACGTCTTCAGAATGGTGGAACGAACATACAACTCAATCAGAACACATAAACAGACACGATTATCACAAAGGCCCATTTCCAAGAAAACAAGTTCAACGATGCGGGAAACATTTGGGTTAGATTCTGAAAAGAATTCTGAAAATGTATTTTATTTCAGAAGTCAGGTTCTTCGAGAACTTGAAATGAAGAATCGAATGGAATGTCCGTCGCTCGATGAAATTTTTTCATTTTATCATTTTCCATGGGAAAAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGAAGTGAAATTCGATACCAT</pcr_primer_p1>
		<pcr_primer_p2>TCATGGAATATGCAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTGAAGTGAAATTCGATACCATCAGATTGAAAACAATATAAACTCTTGAAAATTACTTCTCACTCTTTTTTCTTTTTTTTGTTTTTTCTTCTTTCTCTTTTCCGTCCATTTTCTAACAAAAGTTCGTTTTTATTTCTCTTCCACCTTCCCACGATTTCCTATTTTCGTAGCTCAACTTTTCTTCAGTTTTCAGTTTCAATTCCTTCAGTTTCGTTCTCATAATTTTCATATTTTTGCATATTCCATGA</canonical_amplicon>
		<polymorphic_amplicon>GTGAAGTGAAATTCGATACCATCAGATTGAAAACAATATAAACTCTTGAAAATTACTTCTCACTCTTTTTTCTTTTTTTTGTTTTTTCTTCTTTCTCTTTTCCGTCCATTTTCTAACAAAAGTTCGTTTTTATTTCTCTTCCACCTTCCCACGATTTCCTATTTTCGTAGCTCAACTTTTCTTCAGTTTTCAGKTTCAATTCCTTCAGTTTCGTTCTCATAATTTTCATATTTTTGCATATTCCATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25856</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>423679</contig_pos>
        <strand>+</strand>
        <context>TACCACCAGA[A/G]AATTACGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGTGAAAGGAAAAGGAATGATGACGACGTTCTTCCTTTTACCACCAGA</left_flank>
        <right_flank>AATTACGAATGTCAACTTTACAAGTGATTCCGTAAGCGGCTCAAACTGAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAACTATATCAACGACATATATGGTAGCAAGTGGATTGGCAGGAGAGGTCTGATTCCTTATTGATATGAAATTCAAAATCAATTTTTGGTTATTTTTAGGAATGTGCTGATAACTCTCATGTGGAAGCAATTGCTCTCTTTGCCAGAGAACTCCTTCTCAAACTAGAATCTATCAATATTCACAGTTTCAACGATTTCAATTTGAGAATTGGAATCAATGTTGGACCAGTGGTAGCTGGAGTTATTGGTAGTGATAAACCACATTATGATATTTGGGGAAACAGTGTTAATGTGGCAAGTCGAATGGATAGTGGAGGAGTTGCTGGAAGGATACAGGTACTCGGATTAACCAATGAAACCAATTCACCTAATATTTCCAGGTAACCGAAGAAGTGAAAACAATTCTTGAACCACTCGGGTATAAATTCGAGTGTCGGGGTCAAATAAATGTGAAAGGAAAAGGAATGATGACGACGTTCTTCCTTTTACCACCAGAGAATTACGAATGTCAACTTTACAAGTGATTCCGTAAGCGGCTCAAACTGAGATCTATGACAACAGGTCACACAATGTGATTGTGTATTTATCTATTAATTCCAACCATATGGTTTTATTTTCTTGAAATCCAAGCTATTTAATTCTTGCCAAACCATCAAATGATTCGTAATTAATGTGTATTTGTACTATGTGTTTGTGTCTAAAATGAAACAAATAAATGTTCATTTTTCAGTGTCAAACAAAATCTTATCCGATGTATTTTGGCAGTAATTGAAAACCTAGATGAAATGAATTATACATAATTTACTGCTCCTCGACTATCCTCTGAAATTAATCAATTTCTTTCTGGAACTGTGGAAAAAAAACTCACCGTAAGCAGTGGGAGCATGTATTTATGAACGGTATGTGTTGAATCAGTGAAAGTTACCCGTGCATCTTTGTCGCCTTTTTTGGCTTCTTTGAGCAGAATAATGAGTTTATCTTGTTTCGGTGGTCCTTC</canonical>
            <polymorphic>TTAAAACTATATCAACGACATATATGGTAGCAAGTGGATTGGCAGGAGAGGTCTGATTCCTTATTGATATGAAATTCAAAATCAATTTTTGGTTATTTTTAGGAATGTGCTGATAACTCTCATGTGGAAGCAATTGCTCTCTTTGCCAGAGAACTCCTTCTCAAACTAGAATCTATCAATATTCACAGTTTCAACGATTTCAATTTGAGAATTGGAATCAATGTTGGACCAGTGGTAGCTGGAGTTATTGGTAGTGATAAACCACATTATGATATTTGGGGAAACAGTGTTAATGTGGCAAGTCGAATGGATAGTGGAGGAGTTGCTGGAAGGATACAGGTACTCGGATTAACCAATGAAACCAATTCACCTAATATTTCCAGGTAACCGAAGAAGTGAAAACAATTCTTGAACCACTCGGGTATAAATTCGAGTGTCGGGGTCAAATAAATGTGAAAGGAAAAGGAATGATGACGACGTTCTTCCTTTTACCACCAGARAATTACGAATGTCAACTTTACAAGTGATTCCGTAAGCGGCTCAAACTGAGATCTATGACAACAGGTCACACAATGTGATTGTGTATTTATCTATTAATTCCAACCATATGGTTTTATTTTCTTGAAATCCAAGCTATTTAATTCTTGCCAAACCATCAAATGATTCGTAATTAATGTGTATTTGTACTATGTGTTTGTGTCTAAAATGAAACAAATAAATGTTCATTTTTCAGTGTCAAACAAAATCTTATCCGATGTATTTTGGCAGTAATTGAAAACCTAGATGAAATGAATTATACATAATTTACTGCTCCTCGACTATCCTCTGAAATTAATCAATTTCTTTCTGGAACTGTGGAAAAAAAACTCACCGTAAGCAGTGGGAGCATGTATTTATGAACGGTATGTGTTGAATCAGTGAAAGTTACCCGTGCATCTTTGTCGCCTTTTTTGGCTTCTTTGAGCAGAATAATGAGTTTATCTTGTTTCGGTGGTCCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGTGAAAACAATTCTTGAAC</pcr_primer_p1>
		<pcr_primer_p2>TAGCTTGGATTTCAAGAAAATAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGAAGTGAAAACAATTCTTGAACCACTCGGGTATAAATTCGAGTGTCGGGGTCAAATAAATGTGAAAGGAAAAGGAATGATGACGACGTTCTTCCTTTTACCACCAGAGAATTACGAATGTCAACTTTACAAGTGATTCCGTAAGCGGCTCAAACTGAGATCTATGACAACAGGTCACACAATGTGATTGTGTATTTATCTATTAATTCCAACCATATGGTTTTATTTTCTTGAAATCCAAGCTA</canonical_amplicon>
		<polymorphic_amplicon>AGAAGTGAAAACAATTCTTGAACCACTCGGGTATAAATTCGAGTGTCGGGGTCAAATAAATGTGAAAGGAAAAGGAATGATGACGACGTTCTTCCTTTTACCACCAGARAATTACGAATGTCAACTTTACAAGTGATTCCGTAAGCGGCTCAAACTGAGATCTATGACAACAGGTCACACAATGTGATTGTGTATTTATCTATTAATTCCAACCATATGGTTTTATTTTCTTGAAATCCAAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25857</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>423932</contig_pos>
        <strand>+</strand>
        <context>AAATCTTATC[C/G]GATGTATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAATGAAACAAATAAATGTTCATTTTTCAGTGTCAAACAAAATCTTATC</left_flank>
        <right_flank>GATGTATTTTGGCAGTAATTGAAAACCTAGATGAAATGAATTATACATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGATAAACCACATTATGATATTTGGGGAAACAGTGTTAATGTGGCAAGTCGAATGGATAGTGGAGGAGTTGCTGGAAGGATACAGGTACTCGGATTAACCAATGAAACCAATTCACCTAATATTTCCAGGTAACCGAAGAAGTGAAAACAATTCTTGAACCACTCGGGTATAAATTCGAGTGTCGGGGTCAAATAAATGTGAAAGGAAAAGGAATGATGACGACGTTCTTCCTTTTACCACCAGAGAATTACGAATGTCAACTTTACAAGTGATTCCGTAAGCGGCTCAAACTGAGATCTATGACAACAGGTCACACAATGTGATTGTGTATTTATCTATTAATTCCAACCATATGGTTTTATTTTCTTGAAATCCAAGCTATTTAATTCTTGCCAAACCATCAAATGATTCGTAATTAATGTGTATTTGTACTATGTGTTTGTGTCTAAAATGAAACAAATAAATGTTCATTTTTCAGTGTCAAACAAAATCTTATCCGATGTATTTTGGCAGTAATTGAAAACCTAGATGAAATGAATTATACATAATTTACTGCTCCTCGACTATCCTCTGAAATTAATCAATTTCTTTCTGGAACTGTGGAAAAAAAACTCACCGTAAGCAGTGGGAGCATGTATTTATGAACGGTATGTGTTGAATCAGTGAAAGTTACCCGTGCATCTTTGTCGCCTTTTTTGGCTTCTTTGAGCAGAATAATGAGTTTATCTTGTTTCGGTGGTCCTTCTCTTCGTAGAACCTAAAAAATTGTGAATAGAGGAAATACACACCTTCGCCTCATATGACCTACTTGAAGTTCTGTAGTTCCGCCTGGATCGAGAAATGCGTAAACTGGTGACACTTTGAAAACCTCATTGTTTGAGCATTTGACTTTGAATACAACTCGGCATGTACCATCATTTGTTAGAATATGACGAGAAGCGCCACCAAAATCTATGAATTCGGCAAACGGAGGAAAGATTTTGAGGGAAACGGAGGGT</canonical>
            <polymorphic>GTGATAAACCACATTATGATATTTGGGGAAACAGTGTTAATGTGGCAAGTCGAATGGATAGTGGAGGAGTTGCTGGAAGGATACAGGTACTCGGATTAACCAATGAAACCAATTCACCTAATATTTCCAGGTAACCGAAGAAGTGAAAACAATTCTTGAACCACTCGGGTATAAATTCGAGTGTCGGGGTCAAATAAATGTGAAAGGAAAAGGAATGATGACGACGTTCTTCCTTTTACCACCAGAGAATTACGAATGTCAACTTTACAAGTGATTCCGTAAGCGGCTCAAACTGAGATCTATGACAACAGGTCACACAATGTGATTGTGTATTTATCTATTAATTCCAACCATATGGTTTTATTTTCTTGAAATCCAAGCTATTTAATTCTTGCCAAACCATCAAATGATTCGTAATTAATGTGTATTTGTACTATGTGTTTGTGTCTAAAATGAAACAAATAAATGTTCATTTTTCAGTGTCAAACAAAATCTTATCSGATGTATTTTGGCAGTAATTGAAAACCTAGATGAAATGAATTATACATAATTTACTGCTCCTCGACTATCCTCTGAAATTAATCAATTTCTTTCTGGAACTGTGGAAAAAAAACTCACCGTAAGCAGTGGGAGCATGTATTTATGAACGGTATGTGTTGAATCAGTGAAAGTTACCCGTGCATCTTTGTCGCCTTTTTTGGCTTCTTTGAGCAGAATAATGAGTTTATCTTGTTTCGGTGGTCCTTCTCTTCGTAGAACCTAAAAAATTGTGAATAGAGGAAATACACACCTTCGCCTCATATGACCTACTTGAAGTTCTGTAGTTCCGCCTGGATCGAGAAATGCGTAAACTGGTGACACTTTGAAAACCTCATTGTTTGAGCATTTGACTTTGAATACAACTCGGCATGTACCATCATTTGTTAGAATATGACGAGAAGCGCCACCAAAATCTATGAATTCGGCAAACGGAGGAAAGATTTTGAGGGAAACGGAGGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTGAAATCCAAGCTATTTA</pcr_primer_p1>
		<pcr_primer_p2>CAGTTCCAGAAAGAAATTGATTA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTGAAATCCAAGCTATTTAATTCTTGCCAAACCATCAAATGATTCGTAATTAATGTGTATTTGTACTATGTGTTTGTGTCTAAAATGAAACAAATAAATGTTCATTTTTCAGTGTCAAACAAAATCTTATCCGATGTATTTTGGCAGTAATTGAAAACCTAGATGAAATGAATTATACATAATTTACTGCTCCTCGACTATCCTCTGAAATTAATCAATTTCTTTCTGGAACTG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTGAAATCCAAGCTATTTAATTCTTGCCAAACCATCAAATGATTCGTAATTAATGTGTATTTGTACTATGTGTTTGTGTCTAAAATGAAACAAATAAATGTTCATTTTTCAGTGTCAAACAAAATCTTATCSGATGTATTTTGGCAGTAATTGAAAACCTAGATGAAATGAATTATACATAATTTACTGCTCCTCGACTATCCTCTGAAATTAATCAATTTCTTTCTGGAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25858</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>482843</contig_pos>
        <strand>+</strand>
        <context>CTGAAGTAGA[A/T]TGGATAGACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGAACGATGTAGAATGCAGAGAAAATGAAGGATCCACTTCTGAAGTAGA</left_flank>
        <right_flank>TGGATAGACACTTCTGTTCTCGAAAGTCGGAGCAGTGTCTTCCATAGACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAAGGAGCTTTCGAATGAGAATTTAAAGTAAAGTGGAAACTGGGTATCAACCAAATCAAGGTCCTAAAAATGAAACTTTTTCTTGGCCATTTCAACTGATAACTTACAGATGTGAGCATTTGCATCAGAGATTCTTTATTGGTCTGTGATAAGAATATCATTGGGACAGCGAACATGGCAGTTGTAATGTGATGGTATAGTTTTCTCGATGTTTCTACATTCGTTAGAACAAAGAATGCATAAGACAGCATTGTGGAAACAACTGAAAACTATGTGTACGAACTTTTTGAATGTTTTGAAACTCACTAGCAGAGACAGCAAAAAACGAAATAGTTTGCATGAAGACGTACTGCGGACAGTTGTCACATTCAACTTTCTTCCAAATGGGATCCAACCAGAATGAGAGCCAGAAGAATGCAAGAGCTTGGAATACAAATCGACATATCAGAAGAACGATGTAGAATGCAGAGAAAATGAAGGATCCACTTCTGAAGTAGAATGGATAGACACTTCTGTTCTCGAAAGTCGGAGCAGTGTCTTCCATAGACTGTTTCTTCTTTTTCTTTTTCAAAACCTTGTCATCGAACATCACAGTCTTCCGTGGTGGTTTCTCTTAAAGTTCAGTTACATTTTATGCCCTGAAAAATAAGTCACACTACCATCTGAATACTTCTCTTCAATTATCTTATCAATCTGACTTTGATTGAAAAGCTCATTCATAATTTCACTAGCTTCCATAATCTGGTCATAAGTTCCACTTGTCTCAATCTTTCCATTTTTCAGAACATGAACCGTTGAGAATTTCTTGATGAGCTCAATGTTATTTGTGGCCAGAATTACGGTCTTTTCTCGGAGGTATCCGGCTTCTCCAAGAACCTAAAATTTAAAGGTTTCTATTCCGCATGTTCACAAGAAGAATTACCCTCGTGAAAACTTTCTTCGATGTTGCTCGATCCATTGGTGCAAATGCTTTATCAAGTGCATAGATATCTGCATCCT</canonical>
            <polymorphic>GTAAGGAGCTTTCGAATGAGAATTTAAAGTAAAGTGGAAACTGGGTATCAACCAAATCAAGGTCCTAAAAATGAAACTTTTTCTTGGCCATTTCAACTGATAACTTACAGATGTGAGCATTTGCATCAGAGATTCTTTATTGGTCTGTGATAAGAATATCATTGGGACAGCGAACATGGCAGTTGTAATGTGATGGTATAGTTTTCTCGATGTTTCTACATTCGTTAGAACAAAGAATGCATAAGACAGCATTGTGGAAACAACTGAAAACTATGTGTACGAACTTTTTGAATGTTTTGAAACTCACTAGCAGAGACAGCAAAAAACGAAATAGTTTGCATGAAGACGTACTGCGGACAGTTGTCACATTCAACTTTCTTCCAAATGGGATCCAACCAGAATGAGAGCCAGAAGAATGCAAGAGCTTGGAATACAAATCGACATATCAGAAGAACGATGTAGAATGCAGAGAAAATGAAGGATCCACTTCTGAAGTAGAWTGGATAGACACTTCTGTTCTCGAAAGTCGGAGCAGTGTCTTCCATAGACTGTTTCTTCTTTTTCTTTTTCAAAACCTTGTCATCGAACATCACAGTCTTCCGTGGTGGTTTCTCTTAAAGTTCAGTTACATTTTATGCCCTGAAAAATAAGTCACACTACCATCTGAATACTTCTCTTCAATTATCTTATCAATCTGACTTTGATTGAAAAGCTCATTCATAATTTCACTAGCTTCCATAATCTGGTCATAAGTTCCACTTGTCTCAATCTTTCCATTTTTCAGAACATGAACCGTTGAGAATTTCTTGATGAGCTCAATGTTATTTGTGGCCAGAATTACGGTCTTTTCTCGGAGGTATCCGGCTTCTCCAAGAACCTAAAATTTAAAGGTTTCTATTCCGCATGTTCACAAGAAGAATTACCCTCGTGAAAACTTTCTTCGATGTTGCTCGATCCATTGGTGCAAATGCTTTATCAAGTGCATAGATATCTGCATCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAATCGACATATCAGAAGAAC</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGAGAAGTATTCAGATGGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAAATCGACATATCAGAAGAACGATGTAGAATGCAGAGAAAATGAAGGATCCACTTCTGAAGTAGAATGGATAGACACTTCTGTTCTCGAAAGTCGGAGCAGTGTCTTCCATAGACTGTTTCTTCTTTTTCTTTTTCAAAACCTTGTCATCGAACATCACAGTCTTCCGTGGTGGTTTCTCTTAAAGTTCAGTTACATTTTATGCCCTGAAAAATAAGTCACACTACCATCTGAATACTTCTCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>ACAAATCGACATATCAGAAGAACGATGTAGAATGCAGAGAAAATGAAGGATCCACTTCTGAAGTAGAWTGGATAGACACTTCTGTTCTCGAAAGTCGGAGCAGTGTCTTCCATAGACTGTTTCTTCTTTTTCTTTTTCAAAACCTTGTCATCGAACATCACAGTCTTCCGTGGTGGTTTCTCTTAAAGTTCAGTTACATTTTATGCCCTGAAAAATAAGTCACACTACCATCTGAATACTTCTCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25859</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>530870</contig_pos>
        <strand>+</strand>
        <context>TATATTCCGT[C/G]TACTATGCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAATAATAGGAGAATTTCAGTTATTACCTACTTCAATTATATATTCCGT</left_flank>
        <right_flank>TACTATGCTTGTTATCGTATCATGGGTATCTTTCTGGTTGGATCGTGGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATCCATTTCCAGAACGAAAAACAAGCTCACAAGCATGACATTGACAAACCAAACGTTCTTATTCGCATCCATCGAGATGGCTTGATTCTGTATTCTGTTCGGATTTCAATGGTTCTTTCCTGTCCAATGCATCTGCAATATTATCCAATGGATGTTCAAACATGTCTGATAGATTTGGCTTCTTATGCATACACAACAAATGATATTGAGTATCAATGGAAAAAAGATAAACCTGTTCAGTTAAAAAATGGACTTCATTCATCGCTTCCAAGTTTCCAACTGAACAATGTAACACAGTTCCTGTGATTTGATATGAAATACAAAAGTCTATTTCAGGTTTACACCGATTTATGTACCAGCAAAACGAACACAGGAACTTATTCTTGTTTGAGAACAATTCTGGAGTTGAGAAGACAATTCAGGTAACTATAGGGAATGTGGAATTTCAAAATAATAGGAGAATTTCAGTTATTACCTACTTCAATTATATATTCCGTCTACTATGCTTGTTATCGTATCATGGGTATCTTTCTGGTTGGATCGTGGCGCTGTACCTGCTCGAGTCACTCTTGGAGTCACTACTCTTCTTACCATGACAACTCAGGTGAATTTTTGATGCCACTACAACCAGTCCATATTCTTGAATTTATAGGCGTCTGGCATAAATGCAAAATTGCCTCCCGTATCGTACACAAAAGCGATTGATGTTTGGATTGGAGCATGTCTCACTTTTATTTTTGGTGCTCTTCTCGAGTTTGCATGGGTTACTTACATATCTTCTCGGAGTTTCTACAAACGTAAGCGACCTTATAATCATCTTTTAACTATGACATGCTTTCAGGAAAGAAAATATGCTCGAGTAGGAATTCTTTATTGGTGGAGACCAGACAAGCATTGATAATTCCAAATACAGTAGTTGCCAACTTCACGGAACAACCGACAGATGTAAGTCATTAAATGCTTCATACTTGAGCTCCACTCTTTTTAAGGAAGTTGAA</canonical>
            <polymorphic>TGATCCATTTCCAGAACGAAAAACAAGCTCACAAGCATGACATTGACAAACCAAACGTTCTTATTCGCATCCATCGAGATGGCTTGATTCTGTATTCTGTTCGGATTTCAATGGTTCTTTCCTGTCCAATGCATCTGCAATATTATCCAATGGATGTTCAAACATGTCTGATAGATTTGGCTTCTTATGCATACACAACAAATGATATTGAGTATCAATGGAAAAAAGATAAACCTGTTCAGTTAAAAAATGGACTTCATTCATCGCTTCCAAGTTTCCAACTGAACAATGTAACACAGTTCCTGTGATTTGATATGAAATACAAAAGTCTATTTCAGGTTTACACCGATTTATGTACCAGCAAAACGAACACAGGAACTTATTCTTGTTTGAGAACAATTCTGGAGTTGAGAAGACAATTCAGGTAACTATAGGGAATGTGGAATTTCAAAATAATAGGAGAATTTCAGTTATTACCTACTTCAATTATATATTCCGTSTACTATGCTTGTTATCGTATCATGGGTATCTTTCTGGTTGGATCGTGGCGCTGTACCTGCTCGAGTCACTCTTGGAGTCACTACTCTTCTTACCATGACAACTCAGGTGAATTTTTGATGCCACTACAACCAGTCCATATTCTTGAATTTATAGGCGTCTGGCATAAATGCAAAATTGCCTCCCGTATCGTACACAAAAGCGATTGATGTTTGGATTGGAGCATGTCTCACTTTTATTTTTGGTGCTCTTCTCGAGTTTGCATGGGTTACTTACATATCTTCTCGGAGTTTCTACAAACGTAAGCGACCTTATAATCATCTTTTAACTATGACATGCTTTCAGGAAAGAAAATATGCTCGAGTAGGAATTCTTTATTGGTGGAGACCAGACAAGCATTGATAATTCCAAATACAGTAGTTGCCAACTTCACGGAACAACCGACAGATGTAAGTCATTAAATGCTTCATACTTGAGCTCCACTCTTTTTAAGGAAGTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTACACCGATTTATGTACCAG</pcr_primer_p1>
		<pcr_primer_p2>GAAGAGTAGTGACTCCAAGAGTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTTTACACCGATTTATGTACCAGCAAAACGAACACAGGAACTTATTCTTGTTTGAGAACAATTCTGGAGTTGAGAAGACAATTCAGGTAACTATAGGGAATGTGGAATTTCAAAATAATAGGAGAATTTCAGTTATTACCTACTTCAATTATATATTCCGTCTACTATGCTTGTTATCGTATCATGGGTATCTTTCTGGTTGGATCGTGGCGCTGTACCTGCTCGAGTCACTCTTGGAGTCACTACTCTTC</canonical_amplicon>
		<polymorphic_amplicon>GTTTACACCGATTTATGTACCAGCAAAACGAACACAGGAACTTATTCTTGTTTGAGAACAATTCTGGAGTTGAGAAGACAATTCAGGTAACTATAGGGAATGTGGAATTTCAAAATAATAGGAGAATTTCAGTTATTACCTACTTCAATTATATATTCCGTSTACTATGCTTGTTATCGTATCATGGGTATCTTTCTGGTTGGATCGTGGCGCTGTACCTGCTCGAGTCACTCTTGGAGTCACTACTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25860</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>589496</contig_pos>
        <strand>+</strand>
        <context>GGTAATTAGG[A/C]TTTTTTTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATTTTAGAATGAGAATCTTAGTTTTTTGTTAGCAAAGAAGGTAATTAGG</left_flank>
        <right_flank>TTTTTTTCAATATTTAAATTTTCTATTAGGTTTTTCAATAAGTTGTGGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAAGTTGCAACACCACCAATGACTTACTATTCCTACTACTATTTGTTCTTCAAGAATGAATGATGAATGAGCAGAGGAAAAGGCGATTCATTTATTTAGTAGGTCAGTTGAACGGGAAAAAGAAACATCAAAAATTACATGATGTGCTAGTGGATTGCAGTGCTTCTTCTTTTTTTGTTCACTTTTTGTGTGTTGGCAGAAAATGCCCATCCATTTTTTTTCCTTTTCAACCCTGATTTTCACATGGTCGACAGATGGTTTTGTTATGCACAACGTTTCGACAAACATGGTATCCGGAGGAGAAGAAGACGATTCCGTTTTTATTGGGGGCAGCTGGGTGGAAGAGGTTAAAAGGTTGTAGGTTTTTAATAGGAGTCGTTAAGTGAGGATATTTGAGCTTACCCTCTTAAGTCACATATTTCTAGGAGCCATATCGAATCACCTGGTATTTTAGAATGAGAATCTTAGTTTTTTGTTAGCAAAGAAGGTAATTAGGTTTTTTTTCAATATTTAAATTTTCTATTAGGTTTTTCAATAAGTTGTGGTCACTTTCGCTACCTTTGAGGCCACATAATTCTAGGAGCCATATTGAATCACCTAGTATTCTTTTTAGAATGAGAATTTTTGGTTTTGGTTGGCAAATAAAATAATTAAATTCCTATAATTTTTGAATTTCCTAAATGACACTTAACCGTATGTTATGACTGTTTTTGCCTCTCTACCGCAAATCTCATTGCCGACATGCTTTTTGAATCTAATCCAATTCATCATTTTTGTCCATCTGGTGTGCAGTTTTCCGGTGAACGTCGTCGGAAACAGGAAAAGACAGGAGTGCTCTCTTTTCTTCTCTCCTCACTTGGTCCTGTTTTCTTTTGATCACACCAATTAATTTCATTTGCCTTCTGTCTTTTTGCCTTAAGAAGTGCGGGTGACAAGATGGTGTGGAGATAGACGAATTAGCATTTGAACACTCTACTCCATAAACTGAGTATTTGAG</canonical>
            <polymorphic>TCAAAAGTTGCAACACCACCAATGACTTACTATTCCTACTACTATTTGTTCTTCAAGAATGAATGATGAATGAGCAGAGGAAAAGGCGATTCATTTATTTAGTAGGTCAGTTGAACGGGAAAAAGAAACATCAAAAATTACATGATGTGCTAGTGGATTGCAGTGCTTCTTCTTTTTTTGTTCACTTTTTGTGTGTTGGCAGAAAATGCCCATCCATTTTTTTTCCTTTTCAACCCTGATTTTCACATGGTCGACAGATGGTTTTGTTATGCACAACGTTTCGACAAACATGGTATCCGGAGGAGAAGAAGACGATTCCGTTTTTATTGGGGGCAGCTGGGTGGAAGAGGTTAAAAGGTTGTAGGTTTTTAATAGGAGTCGTTAAGTGAGGATATTTGAGCTTACCCTCTTAAGTCACATATTTCTAGGAGCCATATCGAATCACCTGGTATTTTAGAATGAGAATCTTAGTTTTTTGTTAGCAAAGAAGGTAATTAGGMTTTTTTTCAATATTTAAATTTTCTATTAGGTTTTTCAATAAGTTGTGGTCACTTTCGCTACCTTTGAGGCCACATAATTCTAGGAGCCATATTGAATCACCTAGTATTCTTTTTAGAATGAGAATTTTTGGTTTTGGTTGGCAAATAAAATAATTAAATTCCTATAATTTTTGAATTTCCTAAATGACACTTAACCGTATGTTATGACTGTTTTTGCCTCTCTACCGCAAATCTCATTGCCGACATGCTTTTTGAATCTAATCCAATTCATCATTTTTGTCCATCTGGTGTGCAGTTTTCCGGTGAACGTCGTCGGAAACAGGAAAAGACAGGAGTGCTCTCTTTTCTTCTCTCCTCACTTGGTCCTGTTTTCTTTTGATCACACCAATTAATTTCATTTGCCTTCTGTCTTTTTGCCTTAAGAAGTGCGGGTGACAAGATGGTGTGGAGATAGACGAATTAGCATTTGAACACTCTACTCCATAAACTGAGTATTTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGTTAAAAGGTTGTAGGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCAATATGGCTCCTAGAATTATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAGGTTAAAAGGTTGTAGGTTTTTAATAGGAGTCGTTAAGTGAGGATATTTGAGCTTACCCTCTTAAGTCACATATTTCTAGGAGCCATATCGAATCACCTGGTATTTTAGAATGAGAATCTTAGTTTTTTGTTAGCAAAGAAGGTAATTAGGTTTTTTTTCAATATTTAAATTTTCTATTAGGTTTTTCAATAAGTTGTGGTCACTTTCGCTACCTTTGAGGCCACATAATTCTAGGAGCCATATTGA</canonical_amplicon>
		<polymorphic_amplicon>GAGGTTAAAAGGTTGTAGGTTTTTAATAGGAGTCGTTAAGTGAGGATATTTGAGCTTACCCTCTTAAGTCACATATTTCTAGGAGCCATATCGAATCACCTGGTATTTTAGAATGAGAATCTTAGTTTTTTGTTAGCAAAGAAGGTAATTAGGMTTTTTTTCAATATTTAAATTTTCTATTAGGTTTTTCAATAAGTTGTGGTCACTTTCGCTACCTTTGAGGCCACATAATTCTAGGAGCCATATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25861</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>589951</contig_pos>
        <strand>+</strand>
        <context>GTGGAGATAG[A/G]CGAATTAGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGTCTTTTTGCCTTAAGAAGTGCGGGTGACAAGATGGTGTGGAGATAG</left_flank>
        <right_flank>CGAATTAGCATTTGAACACTCTACTCCATAAACTGAGTATTTGAGTTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATGAGAATCTTAGTTTTTTGTTAGCAAAGAAGGTAATTAGGTTTTTTTTCAATATTTAAATTTTCTATTAGGTTTTTCAATAAGTTGTGGTCACTTTCGCTACCTTTGAGGCCACATAATTCTAGGAGCCATATTGAATCACCTAGTATTCTTTTTAGAATGAGAATTTTTGGTTTTGGTTGGCAAATAAAATAATTAAATTCCTATAATTTTTGAATTTCCTAAATGACACTTAACCGTATGTTATGACTGTTTTTGCCTCTCTACCGCAAATCTCATTGCCGACATGCTTTTTGAATCTAATCCAATTCATCATTTTTGTCCATCTGGTGTGCAGTTTTCCGGTGAACGTCGTCGGAAACAGGAAAAGACAGGAGTGCTCTCTTTTCTTCTCTCCTCACTTGGTCCTGTTTTCTTTTGATCACACCAATTAATTTCATTTGCCTTCTGTCTTTTTGCCTTAAGAAGTGCGGGTGACAAGATGGTGTGGAGATAGACGAATTAGCATTTGAACACTCTACTCCATAAACTGAGTATTTGAGTTATTTCTAGAGTTTCTTTTTCTCCTGTTGTTCTGGAGTCTGTCACTCAAAGCCAATACGTTCGGTGTCTACATGTCCCACCTGGAAAAGTGTCCAGTTTCTGTTGAAATGCATTCTTCTCTTCCCCAAAAAAAAGTTCAGAGTAGGTCAAAAGAGCAGCCAAAGAAGATTAAATGAGGCTTTCATACCTGAGTGGATACCTGGGAGAGCCAGTTGTCATTTATCAGTGAAACAAGAACAATGTTCTGGAGTCTGTCACTTTGGGCTAATTGCCACACATACACATCCAACTCTTTTTCCCATTTTTTCGCCTTCCTGAATTCTTCTTTATTCTTTTTCTCACATTTATATGAGCCAAATTTTTTTCTACTTTGTCTCACTATCAAGCGAAAAATCAAAACCAAAAAGAAGACTTTATTTGGTGCGTCAAATAAATAAACAGGTTATTCCTTTTC</canonical>
            <polymorphic>AGAATGAGAATCTTAGTTTTTTGTTAGCAAAGAAGGTAATTAGGTTTTTTTTCAATATTTAAATTTTCTATTAGGTTTTTCAATAAGTTGTGGTCACTTTCGCTACCTTTGAGGCCACATAATTCTAGGAGCCATATTGAATCACCTAGTATTCTTTTTAGAATGAGAATTTTTGGTTTTGGTTGGCAAATAAAATAATTAAATTCCTATAATTTTTGAATTTCCTAAATGACACTTAACCGTATGTTATGACTGTTTTTGCCTCTCTACCGCAAATCTCATTGCCGACATGCTTTTTGAATCTAATCCAATTCATCATTTTTGTCCATCTGGTGTGCAGTTTTCCGGTGAACGTCGTCGGAAACAGGAAAAGACAGGAGTGCTCTCTTTTCTTCTCTCCTCACTTGGTCCTGTTTTCTTTTGATCACACCAATTAATTTCATTTGCCTTCTGTCTTTTTGCCTTAAGAAGTGCGGGTGACAAGATGGTGTGGAGATAGRCGAATTAGCATTTGAACACTCTACTCCATAAACTGAGTATTTGAGTTATTTCTAGAGTTTCTTTTTCTCCTGTTGTTCTGGAGTCTGTCACTCAAAGCCAATACGTTCGGTGTCTACATGTCCCACCTGGAAAAGTGTCCAGTTTCTGTTGAAATGCATTCTTCTCTTCCCCAAAAAAAAGTTCAGAGTAGGTCAAAAGAGCAGCCAAAGAAGATTAAATGAGGCTTTCATACCTGAGTGGATACCTGGGAGAGCCAGTTGTCATTTATCAGTGAAACAAGAACAATGTTCTGGAGTCTGTCACTTTGGGCTAATTGCCACACATACACATCCAACTCTTTTTCCCATTTTTTCGCCTTCCTGAATTCTTCTTTATTCTTTTTCTCACATTTATATGAGCCAAATTTTTTTCTACTTTGTCTCACTATCAAGCGAAAAATCAAAACCAAAAAGAAGACTTTATTTGGTGCGTCAAATAAATAAACAGGTTATTCCTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTGTCTTTTTGCCTTAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTGACCTACTCTGAACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTGTCTTTTTGCCTTAAGAAGTGCGGGTGACAAGATGGTGTGGAGATAGACGAATTAGCATTTGAACACTCTACTCCATAAACTGAGTATTTGAGTTATTTCTAGAGTTTCTTTTTCTCCTGTTGTTCTGGAGTCTGTCACTCAAAGCCAATACGTTCGGTGTCTACATGTCCCACCTGGAAAAGTGTCCAGTTTCTGTTGAAATGCATTCTTCTCTTCCCCAAAAAAAAGTTCAGAGTAGGTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTCTGTCTTTTTGCCTTAAGAAGTGCGGGTGACAAGATGGTGTGGAGATAGRCGAATTAGCATTTGAACACTCTACTCCATAAACTGAGTATTTGAGTTATTTCTAGAGTTTCTTTTTCTCCTGTTGTTCTGGAGTCTGTCACTCAAAGCCAATACGTTCGGTGTCTACATGTCCCACCTGGAAAAGTGTCCAGTTTCTGTTGAAATGCATTCTTCTCTTCCCCAAAAAAAAGTTCAGAGTAGGTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25862</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>592238</contig_pos>
        <strand>+</strand>
        <context>GGTTTTCAGT[A/G]AAAAATATTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCTCTTCAAAATGTGTTTTTTCAAATAAAAATTTCCGTAGGTTTTCAGT</left_flank>
        <right_flank>AAAAATATTCCAGTAATTTCGAAATTTCATTTTTTTGAAGGGCCCCTCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTTATAGTGAAACAAATTTTACAAGTGATTCTGAAAATGGTTGAAAGCTCTCTGAATGCTTCAATTCGAAATCTAAAAATTTCTGAACTTAATCCAGAAAATTAAGATTTGTCGATAATTTAAAAAATCGAAATTTCTAGAATTTTTCGTACAGAAAACAATTTTCTATTCATATCAAGCCTTTAGAAATCTGAAAATTGCTGCCAATTAACCAGAAAATTTGTATTTTTAATTGCTCATTTGAATTTCTAAGAATCTAAATCCTAGAACTGATAGAACAATAATAGAACTAGAACTTCTTAATTCCTAGAAAATATTTATAGCCTGGGAACTACATCTGCAGAGTTTTCAATTTAATAGTGAATGATTTTTTTAGTCCAAAAGTCAATGTGTTAGGCCCATCTTCTAACAGTTTTCTGTCATTAACCTCCCTGTAATAAAAGGACCCTCTTCAAAATGTGTTTTTTCAAATAAAAATTTCCGTAGGTTTTCAGTGAAAAATATTCCAGTAATTTCGAAATTTCATTTTTTTGAAGGGCCCCTCTTTAATAAAATTTCCCCCTCTAATAGAAAGACTCTCCTGAGGTACCTTGGGTTTTATGGTGAATTGAGTTTCCTCAATACGATTTACTTCTATTTTACTATGAATTTTTCCATGTTTGCCTCAGCTTTTTGATTTAAACCTGACCCATCTATGCAAATCCAAACGTTTTCTAACACAGATCTTCCGAACTTTCAACTCGTTTTTTTCCTCTCATCAAACATCATCTTCGCGTTTTTCGAGAAGACCAATTTTCGCATTTACTCTCTCATTTAATACCCCAGAAAAAGAAACTTTCAATTTTCAAGTCCGATCATCATCATTCGGCACAATTTGGTTTTGTTTGTTTTATACCCTCTTAACCTGGCTCTCGTGCAACGTGTCGAGGCGCATGTTTACTACAGTTTCTTTTTTTTTTGTTGAGATGACACACTGAATCATTTGCTTTTCTGATT</canonical>
            <polymorphic>ATTTTTTATAGTGAAACAAATTTTACAAGTGATTCTGAAAATGGTTGAAAGCTCTCTGAATGCTTCAATTCGAAATCTAAAAATTTCTGAACTTAATCCAGAAAATTAAGATTTGTCGATAATTTAAAAAATCGAAATTTCTAGAATTTTTCGTACAGAAAACAATTTTCTATTCATATCAAGCCTTTAGAAATCTGAAAATTGCTGCCAATTAACCAGAAAATTTGTATTTTTAATTGCTCATTTGAATTTCTAAGAATCTAAATCCTAGAACTGATAGAACAATAATAGAACTAGAACTTCTTAATTCCTAGAAAATATTTATAGCCTGGGAACTACATCTGCAGAGTTTTCAATTTAATAGTGAATGATTTTTTTAGTCCAAAAGTCAATGTGTTAGGCCCATCTTCTAACAGTTTTCTGTCATTAACCTCCCTGTAATAAAAGGACCCTCTTCAAAATGTGTTTTTTCAAATAAAAATTTCCGTAGGTTTTCAGTRAAAAATATTCCAGTAATTTCGAAATTTCATTTTTTTGAAGGGCCCCTCTTTAATAAAATTTCCCCCTCTAATAGAAAGACTCTCCTGAGGTACCTTGGGTTTTATGGTGAATTGAGTTTCCTCAATACGATTTACTTCTATTTTACTATGAATTTTTCCATGTTTGCCTCAGCTTTTTGATTTAAACCTGACCCATCTATGCAAATCCAAACGTTTTCTAACACAGATCTTCCGAACTTTCAACTCGTTTTTTTCCTCTCATCAAACATCATCTTCGCGTTTTTCGAGAAGACCAATTTTCGCATTTACTCTCTCATTTAATACCCCAGAAAAAGAAACTTTCAATTTTCAAGTCCGATCATCATCATTCGGCACAATTTGGTTTTGTTTGTTTTATACCCTCTTAACCTGGCTCTCGTGCAACGTGTCGAGGCGCATGTTTACTACAGTTTCTTTTTTTTTTGTTGAGATGACACACTGAATCATTTGCTTTTCTGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>335 151 114 109 69 48 46 35 30 23 18 13 7 2</canonical_bands>
                <polymorphic_bands>335 151 144 114 69 48 46 30 23 18 13 7 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTAGTCCAAAAGTCAATGTGT</pcr_primer_p1>
		<pcr_primer_p2>AGGAAACTCAATTCACCATAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTTAGTCCAAAAGTCAATGTGTTAGGCCCATCTTCTAACAGTTTTCTGTCATTAACCTCCCTGTAATAAAAGGACCCTCTTCAAAATGTGTTTTTTCAAATAAAAATTTCCGTAGGTTTTCAGTGAAAAATATTCCAGTAATTTCGAAATTTCATTTTTTTGAAGGGCCCCTCTTTAATAAAATTTCCCCCTCTAATAGAAAGACTCTCCTGAGGTACCTTGGGTTTTATGGTGAATTGAGTTTCCT</canonical_amplicon>
		<polymorphic_amplicon>TTTTAGTCCAAAAGTCAATGTGTTAGGCCCATCTTCTAACAGTTTTCTGTCATTAACCTCCCTGTAATAAAAGGACCCTCTTCAAAATGTGTTTTTTCAAATAAAAATTTCCGTAGGTTTTCAGTRAAAAATATTCCAGTAATTTCGAAATTTCATTTTTTTGAAGGGCCCCTCTTTAATAAAATTTCCCCCTCTAATAGAAAGACTCTCCTGAGGTACCTTGGGTTTTATGGTGAATTGAGTTTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25863</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>623953</contig_pos>
        <strand>+</strand>
        <context>TCATCAACCT[A/C]MAATTTTTAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTATTATTTTTCCCCTATTCGTTCTGTTCCGCGTTTTTTCATCAACCT</left_flank>
        <right_flank>AAATTTTTAGCAACTTCCTACCTGCGTCAGAAGTTGCTGAGAAACTCGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCTTCCCTTTCAATTCCATATCTTCTTCTTCTTCTTCTTTTTCTTCTTCTTCTTCTTATTCTTCTTATTTCAGTTTCTTCTAATCAGTTATCCAAATTCAATTCGTTTTGCTCTTATTCATCCACAACTCACAATTCTTTCTCTTCTCTCGTTTTCTCCTTCTTATTCTTCTTTTTCTTCTCCCACCATTGCCAGGTGTACATACTTACATACATTCGCTTATCTGTCTCTCTTTTGGCTATACGCATGGCGAGCCTTGATTACCGGTTGCTATGTCTCGAGTTCTTCACTCTTACTCTCTCTTTTTGTCCCACTTCTCCTTCTTCTTTTTCTTCTTTTTTCTCCTTCATTTCATCATTCTTTTCTCTGTTTTTCTCAGTCTTCGTTCCCCTTCAGGAGCACCTAATTTCTCCTATGATCCTTTCGCTGTACCTATAATATATCACTTTTATTATTTTTCCCCTATTCGTTCTGTTCCGCGTTTTTTCATCAACCTCAAATTTTTAGCAACTTCCTACCTGCGTCAGAAGTTGCTGAGAAACTCGTGATTCTTTTTAGATTAAATTTTGGACTTATTACCACCAGACAAACTTCCCACCAAGTTTTTTCAAAACAAGGAAATAGACCCCGCCTCCGAAATTCTTCACTTTTCTTTTCGACGTGGTTTTTTTAAAGACTAGGTCATCAATTGTCTTTTATGAGCATCGCAAATGAGCACTTTGCGTGTGGGTTGAAATTGGTTTTGACATTCGAATTTTCTCGAAATTCTCAAAAAAAATATGTCTCCACTCAACATTAAACGTGTTTTTTTTCGTTTTGACTGCATATGTCTGAAAATTAAAGTAGATATGAAGCAGCAGAAGATATTTTGAAATTCAGTATCTTCTATTGTCTTGGAATATTTTCTAGAAATGTAGTGAAAGCAGAATAGAAGTGATAATCTTTGACCAGTTATTAGTATCATGAGTATTATGATGGTTACAATGATTCTATGAAA</canonical>
            <polymorphic>ATTTCTTCCCTTTCAATTCCATATCTTCTTCTTCTTCTTCTTTTTCTTCTTCTTCTTCTTATTCTTCTTATTTCAGTTTCTTCTAATCAGTTATCCAAATTCAATTCGTTTTGCTCTTATTCATCCACAACTCACAATTCTTTCTCTTCTCTCGTTTTCTCCTTCTTATTCTTCTTTTTCTTCTCCCACCATTGCCAGGTGTACATACTTACATACATTCGCTTATCTGTCTCTCTTTTGGCTATACGCATGGCGAGCCTTGATTACCGGTTGCTATGTCTCGAGTTCTTCACTCTTACTCTCTCTTTTTGTCCCACTTCTCCTTCTTCTTTTTCTTCTTTTTTCTCCTTCATTTCATCATTCTTTTCTCTGTTTTTCTCAGTCTTCGTTCCCCTTCAGGAGCACCTAATTTCTCCTATGATCCTTTCGCTGTACCTATAATATATCACTTTTATTATTTTTCCCCTATTCGTTCTGTTCCGCGTTTTTTCATCAACCTMAAATTTTTAGCAACTTCCTACCTGCGTCAGAAGTTGCTGAGAAACTCGTGATTCTTTTTAGATTAAATTTTGGACTTATTACCACCAGACAAACTTCCCACCAAGTTTTTTCAAAACAAGGAAATAGACCCCGCCTCCGAAATTCTTCACTTTTCTTTTCGACGTGGTTTTTTTAAAGACTAGGTCATCAATTGTCTTTTATGAGCATCGCAAATGAGCACTTTGCGTGTGGGTTGAAATTGGTTTTGACATTCGAATTTTCTCGAAATTCTCAAAAAAAATATGTCTCCACTCAACATTAAACGTGTTTTTTTTCGTTTTGACTGCATATGTCTGAAAATTAAAGTAGATATGAAGCAGCAGAAGATATTTTGAAATTCAGTATCTTCTATTGTCTTGGAATATTTTCTAGAAATGTAGTGAAAGCAGAATAGAAGTGATAATCTTTGACCAGTTATTAGTATCATGAGTATTATGATGGTTACAATGATTCTATGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCATCATTCTTTTCTCTGTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAGTTTGTCTGGTGGTAATAAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTCATCATTCTTTTCTCTGTTTTTCTCAGTCTTCGTTCCCCTTCAGGAGCACCTAATTTCTCCTATGATCCTTTCGCTGTACCTATAATATATCACTTTTATTATTTTTCCCCTATTCGTTCTGTTCCGCGTTTTTTCATCAACCTCAAATTTTTAGCAACTTCCTACCTGCGTCAGAAGTTGCTGAGAAACTCGTGATTCTTTTTAGATTAAATTTTGGACTTATTACCACCAGACAAACTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTCATCATTCTTTTCTCTGTTTTTCTCAGTCTTCGTTCCCCTTCAGGAGCACCTAATTTCTCCTATGATCCTTTCGCTGTACCTATAATATATCACTTTTATTATTTTTCCCCTATTCGTTCTGTTCCGCGTTTTTTCATCAACCTMAAATTTTTAGCAACTTCCTACCTGCGTCAGAAGTTGCTGAGAAACTCGTGATTCTTTTTAGATTAAATTTTGGACTTATTACCACCAGACAAACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25864</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>623954</contig_pos>
        <strand>+</strand>
        <context>CATCAACCTM[A/C]AATTTTTAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTATTATTTTTCCCCTATTCGTTCTGTTCCGCGTTTTTTCATCAACCTC</left_flank>
        <right_flank>AATTTTTAGCAACTTCCTACCTGCGTCAGAAGTTGCTGAGAAACTCGTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTTCCCTTTCAATTCCATATCTTCTTCTTCTTCTTCTTTTTCTTCTTCTTCTTCTTATTCTTCTTATTTCAGTTTCTTCTAATCAGTTATCCAAATTCAATTCGTTTTGCTCTTATTCATCCACAACTCACAATTCTTTCTCTTCTCTCGTTTTCTCCTTCTTATTCTTCTTTTTCTTCTCCCACCATTGCCAGGTGTACATACTTACATACATTCGCTTATCTGTCTCTCTTTTGGCTATACGCATGGCGAGCCTTGATTACCGGTTGCTATGTCTCGAGTTCTTCACTCTTACTCTCTCTTTTTGTCCCACTTCTCCTTCTTCTTTTTCTTCTTTTTTCTCCTTCATTTCATCATTCTTTTCTCTGTTTTTCTCAGTCTTCGTTCCCCTTCAGGAGCACCTAATTTCTCCTATGATCCTTTCGCTGTACCTATAATATATCACTTTTATTATTTTTCCCCTATTCGTTCTGTTCCGCGTTTTTTCATCAACCTCAAATTTTTAGCAACTTCCTACCTGCGTCAGAAGTTGCTGAGAAACTCGTGATTCTTTTTAGATTAAATTTTGGACTTATTACCACCAGACAAACTTCCCACCAAGTTTTTTCAAAACAAGGAAATAGACCCCGCCTCCGAAATTCTTCACTTTTCTTTTCGACGTGGTTTTTTTAAAGACTAGGTCATCAATTGTCTTTTATGAGCATCGCAAATGAGCACTTTGCGTGTGGGTTGAAATTGGTTTTGACATTCGAATTTTCTCGAAATTCTCAAAAAAAATATGTCTCCACTCAACATTAAACGTGTTTTTTTTCGTTTTGACTGCATATGTCTGAAAATTAAAGTAGATATGAAGCAGCAGAAGATATTTTGAAATTCAGTATCTTCTATTGTCTTGGAATATTTTCTAGAAATGTAGTGAAAGCAGAATAGAAGTGATAATCTTTGACCAGTTATTAGTATCATGAGTATTATGATGGTTACAATGATTCTATGAAAA</canonical>
            <polymorphic>TTTCTTCCCTTTCAATTCCATATCTTCTTCTTCTTCTTCTTTTTCTTCTTCTTCTTCTTATTCTTCTTATTTCAGTTTCTTCTAATCAGTTATCCAAATTCAATTCGTTTTGCTCTTATTCATCCACAACTCACAATTCTTTCTCTTCTCTCGTTTTCTCCTTCTTATTCTTCTTTTTCTTCTCCCACCATTGCCAGGTGTACATACTTACATACATTCGCTTATCTGTCTCTCTTTTGGCTATACGCATGGCGAGCCTTGATTACCGGTTGCTATGTCTCGAGTTCTTCACTCTTACTCTCTCTTTTTGTCCCACTTCTCCTTCTTCTTTTTCTTCTTTTTTCTCCTTCATTTCATCATTCTTTTCTCTGTTTTTCTCAGTCTTCGTTCCCCTTCAGGAGCACCTAATTTCTCCTATGATCCTTTCGCTGTACCTATAATATATCACTTTTATTATTTTTCCCCTATTCGTTCTGTTCCGCGTTTTTTCATCAACCTCMAATTTTTAGCAACTTCCTACCTGCGTCAGAAGTTGCTGAGAAACTCGTGATTCTTTTTAGATTAAATTTTGGACTTATTACCACCAGACAAACTTCCCACCAAGTTTTTTCAAAACAAGGAAATAGACCCCGCCTCCGAAATTCTTCACTTTTCTTTTCGACGTGGTTTTTTTAAAGACTAGGTCATCAATTGTCTTTTATGAGCATCGCAAATGAGCACTTTGCGTGTGGGTTGAAATTGGTTTTGACATTCGAATTTTCTCGAAATTCTCAAAAAAAATATGTCTCCACTCAACATTAAACGTGTTTTTTTTCGTTTTGACTGCATATGTCTGAAAATTAAAGTAGATATGAAGCAGCAGAAGATATTTTGAAATTCAGTATCTTCTATTGTCTTGGAATATTTTCTAGAAATGTAGTGAAAGCAGAATAGAAGTGATAATCTTTGACCAGTTATTAGTATCATGAGTATTATGATGGTTACAATGATTCTATGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>404 126 115 109 96 75 64 11</canonical_bands>
                <polymorphic_bands>468 126 115 109 96 75 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCATCATTCTTTTCTCTGTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAGTTTGTCTGGTGGTAATAAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTCATCATTCTTTTCTCTGTTTTTCTCAGTCTTCGTTCCCCTTCAGGAGCACCTAATTTCTCCTATGATCCTTTCGCTGTACCTATAATATATCACTTTTATTATTTTTCCCCTATTCGTTCTGTTCCGCGTTTTTTCATCAACCTCAAATTTTTAGCAACTTCCTACCTGCGTCAGAAGTTGCTGAGAAACTCGTGATTCTTTTTAGATTAAATTTTGGACTTATTACCACCAGACAAACTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTCATCATTCTTTTCTCTGTTTTTCTCAGTCTTCGTTCCCCTTCAGGAGCACCTAATTTCTCCTATGATCCTTTCGCTGTACCTATAATATATCACTTTTATTATTTTTCCCCTATTCGTTCTGTTCCGCGTTTTTTCATCAACCTCMAATTTTTAGCAACTTCCTACCTGCGTCAGAAGTTGCTGAGAAACTCGTGATTCTTTTTAGATTAAATTTTGGACTTATTACCACCAGACAAACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25865</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>625901</contig_pos>
        <strand>+</strand>
        <context>CAAACTACGG[A/T]TTTTTTTWAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAATTCAATGAAAGGACTTTCGGGGGAGTAGAAAATTTGCAAACTACGG</left_flank>
        <right_flank>TTTTTTTAAATTCTTTCCGGTACCATGTGGGTTTTTCCCAGTTGATTGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGCTGTACTCATTTTCACATTTCTTTCTCCTTCTAATACCTCTTTTCTCGATGTAAACAATCTTTGTTGGCCATGTGATTTCAAACTTTCCCTTCTTTTTCCAACTATGTTCTCCTTCTGGATGACAGCTGAATCCAAACAAACGAGATTCTCATGGAGGTTCTGTCCCCCTTATATTCTTTGCTCATCCTCCAACTTCCACCAATCTCAGCTCGTTTTTTTTATGACTACTGTAATCCTTGAAAAACAGAAAAGAGCTCTTTCGATTGTCGTCGTAGCTATAGAAGAAGAGGATTAGATCCCACAAATCTGCTACAGAAATTTGTATCAAAGAACGTCTCTCTGAATCAACCAGTATGTCTGATTTTGAAATCGTATATTTATCGTGTTGTGCTCTGTGAATGTTGATATTTTGATATTCTCATTCAATTGTCGTTAGGGCGTTTGTTAATTCAATGAAAGGACTTTCGGGGGAGTAGAAAATTTGCAAACTACGGTTTTTTTTAAATTCTTTCCGGTACCATGTGGGTTTTTCCCAGTTGATTGGAGAAATTGAATTACACCTCACTCTACTGATTCGGTCACTTCATTCAACCAGGTTGCAGCCATCAGAGTTCAGGGGAGAAGTGTACGAAAAGAGTTTCACAAAATTATGAAAAAGAACGCACATCAAGTTTCGTGTCATATTTCGTTTAGCTGTCTGGGGACTTTTGGTCGGAACGCTAATGAACGGCGACAAGCTGAATTTATATTTATTAGAGGATTGCCAATATAGCTATTCCAAATAACAATGAAAACGGACTCTGGTTTTGTATATTATTGATGTATTATCTATCATGTTTATATGTGACTTGATGTCTAGATTCAGATCACCATTTCCAAAATGTTTCGGAATTTTTATGTCCGACAAAAAATTTGTTGTGATTTTTTAATAACTAAATTTTTTCCAAAGTTATGTGTGTTCATAATATTATTTCAAAAAGATTCAGGAAAAATTG</canonical>
            <polymorphic>AAAGCTGTACTCATTTTCACATTTCTTTCTCCTTCTAATACCTCTTTTCTCGATGTAAACAATCTTTGTTGGCCATGTGATTTCAAACTTTCCCTTCTTTTTCCAACTATGTTCTCCTTCTGGATGACAGCTGAATCCAAACAAACGAGATTCTCATGGAGGTTCTGTCCCCCTTATATTCTTTGCTCATCCTCCAACTTCCACCAATCTCAGCTCGTTTTTTTTATGACTACTGTAATCCTTGAAAAACAGAAAAGAGCTCTTTCGATTGTCGTCGTAGCTATAGAAGAAGAGGATTAGATCCCACAAATCTGCTACAGAAATTTGTATCAAAGAACGTCTCTCTGAATCAACCAGTATGTCTGATTTTGAAATCGTATATTTATCGTGTTGTGCTCTGTGAATGTTGATATTTTGATATTCTCATTCAATTGTCGTTAGGGCGTTTGTTAATTCAATGAAAGGACTTTCGGGGGAGTAGAAAATTTGCAAACTACGGWTTTTTTTAAATTCTTTCCGGTACCATGTGGGTTTTTCCCAGTTGATTGGAGAAATTGAATTACACCTCACTCTACTGATTCGGTCACTTCATTCAACCAGGTTGCAGCCATCAGAGTTCAGGGGAGAAGTGTACGAAAAGAGTTTCACAAAATTATGAAAAAGAACGCACATCAAGTTTCGTGTCATATTTCGTTTAGCTGTCTGGGGACTTTTGGTCGGAACGCTAATGAACGGCGACAAGCTGAATTTATATTTATTAGAGGATTGCCAATATAGCTATTCCAAATAACAATGAAAACGGACTCTGGTTTTGTATATTATTGATGTATTATCTATCATGTTTATATGTGACTTGATGTCTAGATTCAGATCACCATTTCCAAAATGTTTCGGAATTTTTATGTCCGACAAAAAATTTGTTGTGATTTTTTAATAACTAAATTTTTTCCAAAGTTATGTGTGTTCATAATATTATTTCAAAAAGATTCAGGAAAAATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>502 264 234</canonical_bands>
                <polymorphic_bands>766 234</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTGTGAATGTTGATATTTTGA</pcr_primer_p1>
		<pcr_primer_p2>AAACTCTTTTCGTACACTTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTGTGAATGTTGATATTTTGATATTCTCATTCAATTGTCGTTAGGGCGTTTGTTAATTCAATGAAAGGACTTTCGGGGGAGTAGAAAATTTGCAAACTACGGTTTTTTTTAAATTCTTTCCGGTACCATGTGGGTTTTTCCCAGTTGATTGGAGAAATTGAATTACACCTCACTCTACTGATTCGGTCACTTCATTCAACCAGGTTGCAGCCATCAGAGTTCAGGGGAGAAGTGTACGAAAAGAGTTT</canonical_amplicon>
		<polymorphic_amplicon>CTCTGTGAATGTTGATATTTTGATATTCTCATTCAATTGTCGTTAGGGCGTTTGTTAATTCAATGAAAGGACTTTCGGGGGAGTAGAAAATTTGCAAACTACGGWTTTTTTTAAATTCTTTCCGGTACCATGTGGGTTTTTCCCAGTTGATTGGAGAAATTGAATTACACCTCACTCTACTGATTCGGTCACTTCATTCAACCAGGTTGCAGCCATCAGAGTTCAGGGGAGAAGTGTACGAAAAGAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25866</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>631794</contig_pos>
        <strand>+</strand>
        <context>GGAACACCCG[C/T]GGTTTGTTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAACAACATCACTTCCTCTATGTTTCATTTTCTCTCTCGGAACACCCG</left_flank>
        <right_flank>GGTTTGTTATAAATGAAGGTTAAAAGTTGCGAATTTATCTTGATGAACAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAAAATATATTTATTGAGCCAAACTAGATATTATTTTTCTGCAAAGGAGGATTAAAAACTGGAGTTCTGTCAGAAAAATTTCAAATACAGTTCATATTCCATGTACAGGAGATTTTTCTGAGTTTTAATGGTACTATCGTGCCGCTTTTATGGGCGTCTTCTCTTGCTTCGTCCGCATGGCTCAATATGAAGCAGCGTCGCACCTTCAATACTCGTCCCAAAAGTTCAACTCCTCAAGAGGCTTATATAAAAGAATTTCGAGAAAGTTACTTTTTTTGCATGTCCCCACCATTAAAGGGCCCTACAAGTGTTTCATGATCCGACATGGTCTGATCCGACCATACCAGCTAGATTACTACAAAAACTTTTTATCTTCTTCGCACGTTTACCCATTTTTTCTGCAAACAGAAAAACACCTAATTCAAGGTCATTAATTACGAAAATACAATTAAACAACATCACTTCCTCTATGTTTCATTTTCTCTCTCGGAACACCCGTGGTTTGTTATAAATGAAGGTTAAAAGTTGCGAATTTATCTTGATGAACACACATAAACAACTTGAATGGCTAGTACTGGACGGTACCTAGAACACTCTCCGGTGATTCGTTGAAAATGAAAAAAAGATAATTTGATTAAGTGTGTATACCAGTTAAAATGTGAGAAACAACAGAAAATTGGCTAAGGAATTAGAAAAAAGAGACCGAAGGATCAAAATCAAACTAGGCTACAGTATGCCATCTTGAGTACTCACGGAATATGAGACAGGCTGCCAACATTTCAATGAATTGAGTAGCTCCGTCCGTTCAGTTGGGCTAAAATACCTTACAGTTGAGCAGATTGAACAAAACCTAGTCAATTTGCTTATAAAACGACAGAATTCGTCAGCAAGCCTAGTCCTGAAGATGATCGAAGTTGAGCAGGGCTTGGAAAATGAGATTTTAAAGGACTACTTGGTCTCCAATCAAGAAACATAGAATTCTTCCTATATTTGCCACAG</canonical>
            <polymorphic>GGAAAATATATTTATTGAGCCAAACTAGATATTATTTTTCTGCAAAGGAGGATTAAAAACTGGAGTTCTGTCAGAAAAATTTCAAATACAGTTCATATTCCATGTACAGGAGATTTTTCTGAGTTTTAATGGTACTATCGTGCCGCTTTTATGGGCGTCTTCTCTTGCTTCGTCCGCATGGCTCAATATGAAGCAGCGTCGCACCTTCAATACTCGTCCCAAAAGTTCAACTCCTCAAGAGGCTTATATAAAAGAATTTCGAGAAAGTTACTTTTTTTGCATGTCCCCACCATTAAAGGGCCCTACAAGTGTTTCATGATCCGACATGGTCTGATCCGACCATACCAGCTAGATTACTACAAAAACTTTTTATCTTCTTCGCACGTTTACCCATTTTTTCTGCAAACAGAAAAACACCTAATTCAAGGTCATTAATTACGAAAATACAATTAAACAACATCACTTCCTCTATGTTTCATTTTCTCTCTCGGAACACCCGYGGTTTGTTATAAATGAAGGTTAAAAGTTGCGAATTTATCTTGATGAACACACATAAACAACTTGAATGGCTAGTACTGGACGGTACCTAGAACACTCTCCGGTGATTCGTTGAAAATGAAAAAAAGATAATTTGATTAAGTGTGTATACCAGTTAAAATGTGAGAAACAACAGAAAATTGGCTAAGGAATTAGAAAAAAGAGACCGAAGGATCAAAATCAAACTAGGCTACAGTATGCCATCTTGAGTACTCACGGAATATGAGACAGGCTGCCAACATTTCAATGAATTGAGTAGCTCCGTCCGTTCAGTTGGGCTAAAATACCTTACAGTTGAGCAGATTGAACAAAACCTAGTCAATTTGCTTATAAAACGACAGAATTCGTCAGCAAGCCTAGTCCTGAAGATGATCGAAGTTGAGCAGGGCTTGGAAAATGAGATTTTAAAGGACTACTTGGTCTCCAATCAAGAAACATAGAATTCTTCCTATATTTGCCACAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>244 142 91 86 72 61 48 46 43 38 33 33 22 18 10 6 3 2 2</canonical_bands>
                <polymorphic_bands>244 142 91 86 72 61 54 46 43 38 33 33 22 18 10 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATTAAACAACATCACTTCCTC</pcr_primer_p1>
		<pcr_primer_p2>TTTCTAATTCCTTAGCCAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAATTAAACAACATCACTTCCTCTATGTTTCATTTTCTCTCTCGGAACACCCGTGGTTTGTTATAAATGAAGGTTAAAAGTTGCGAATTTATCTTGATGAACACACATAAACAACTTGAATGGCTAGTACTGGACGGTACCTAGAACACTCTCCGGTGATTCGTTGAAAATGAAAAAAAGATAATTTGATTAAGTGTGTATACCAGTTAAAATGTGAGAAACAACAGAAAATTGGCTAAGGAATTAGAAA</canonical_amplicon>
		<polymorphic_amplicon>CAATTAAACAACATCACTTCCTCTATGTTTCATTTTCTCTCTCGGAACACCCGYGGTTTGTTATAAATGAAGGTTAAAAGTTGCGAATTTATCTTGATGAACACACATAAACAACTTGAATGGCTAGTACTGGACGGTACCTAGAACACTCTCCGGTGATTCGTTGAAAATGAAAAAAAGATAATTTGATTAAGTGTGTATACCAGTTAAAATGTGAGAAACAACAGAAAATTGGCTAAGGAATTAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25867</snp_id>
        <super_contig>c001800653.Contig5</super_contig>
        <contig_pos>631884</contig_pos>
        <strand>+</strand>
        <context>ACGGTACCTA[A/G]AACACTCTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGATGAACACACATAAACAACTTGAATGGCTAGTACTGGACGGTACCTA</left_flank>
        <right_flank>AACACTCTCCGGTGATTCGTTGAAAATGAAAAAAAGATAATTTGATTAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCATATTCCATGTACAGGAGATTTTTCTGAGTTTTAATGGTACTATCGTGCCGCTTTTATGGGCGTCTTCTCTTGCTTCGTCCGCATGGCTCAATATGAAGCAGCGTCGCACCTTCAATACTCGTCCCAAAAGTTCAACTCCTCAAGAGGCTTATATAAAAGAATTTCGAGAAAGTTACTTTTTTTGCATGTCCCCACCATTAAAGGGCCCTACAAGTGTTTCATGATCCGACATGGTCTGATCCGACCATACCAGCTAGATTACTACAAAAACTTTTTATCTTCTTCGCACGTTTACCCATTTTTTCTGCAAACAGAAAAACACCTAATTCAAGGTCATTAATTACGAAAATACAATTAAACAACATCACTTCCTCTATGTTTCATTTTCTCTCTCGGAACACCCGTGGTTTGTTATAAATGAAGGTTAAAAGTTGCGAATTTATCTTGATGAACACACATAAACAACTTGAATGGCTAGTACTGGACGGTACCTAGAACACTCTCCGGTGATTCGTTGAAAATGAAAAAAAGATAATTTGATTAAGTGTGTATACCAGTTAAAATGTGAGAAACAACAGAAAATTGGCTAAGGAATTAGAAAAAAGAGACCGAAGGATCAAAATCAAACTAGGCTACAGTATGCCATCTTGAGTACTCACGGAATATGAGACAGGCTGCCAACATTTCAATGAATTGAGTAGCTCCGTCCGTTCAGTTGGGCTAAAATACCTTACAGTTGAGCAGATTGAACAAAACCTAGTCAATTTGCTTATAAAACGACAGAATTCGTCAGCAAGCCTAGTCCTGAAGATGATCGAAGTTGAGCAGGGCTTGGAAAATGAGATTTTAAAGGACTACTTGGTCTCCAATCAAGAAACATAGAATTCTTCCTATATTTGCCACAGAAACTCTGAAAATTATGATTTTCGTGGGGGGATTTCTTTCAGTGCGAGCTCTCCTAAGAAGTTCGAACTGCAAGCTTTATGAAAAATTTT</canonical>
            <polymorphic>GTTCATATTCCATGTACAGGAGATTTTTCTGAGTTTTAATGGTACTATCGTGCCGCTTTTATGGGCGTCTTCTCTTGCTTCGTCCGCATGGCTCAATATGAAGCAGCGTCGCACCTTCAATACTCGTCCCAAAAGTTCAACTCCTCAAGAGGCTTATATAAAAGAATTTCGAGAAAGTTACTTTTTTTGCATGTCCCCACCATTAAAGGGCCCTACAAGTGTTTCATGATCCGACATGGTCTGATCCGACCATACCAGCTAGATTACTACAAAAACTTTTTATCTTCTTCGCACGTTTACCCATTTTTTCTGCAAACAGAAAAACACCTAATTCAAGGTCATTAATTACGAAAATACAATTAAACAACATCACTTCCTCTATGTTTCATTTTCTCTCTCGGAACACCCGTGGTTTGTTATAAATGAAGGTTAAAAGTTGCGAATTTATCTTGATGAACACACATAAACAACTTGAATGGCTAGTACTGGACGGTACCTARAACACTCTCCGGTGATTCGTTGAAAATGAAAAAAAGATAATTTGATTAAGTGTGTATACCAGTTAAAATGTGAGAAACAACAGAAAATTGGCTAAGGAATTAGAAAAAAGAGACCGAAGGATCAAAATCAAACTAGGCTACAGTATGCCATCTTGAGTACTCACGGAATATGAGACAGGCTGCCAACATTTCAATGAATTGAGTAGCTCCGTCCGTTCAGTTGGGCTAAAATACCTTACAGTTGAGCAGATTGAACAAAACCTAGTCAATTTGCTTATAAAACGACAGAATTCGTCAGCAAGCCTAGTCCTGAAGATGATCGAAGTTGAGCAGGGCTTGGAAAATGAGATTTTAAAGGACTACTTGGTCTCCAATCAAGAAACATAGAATTCTTCCTATATTTGCCACAGAAACTCTGAAAATTATGATTTTCGTGGGGGGATTTCTTTCAGTGCGAGCTCTCCTAAGAAGTTCGAACTGCAAGCTTTATGAAAAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>259 221 196 136 129 42 17</canonical_bands>
                <polymorphic_bands>259 221 196 153 129 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATTAAACAACATCACTTCCTC</pcr_primer_p1>
		<pcr_primer_p2>TTTCTAATTCCTTAGCCAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAATTAAACAACATCACTTCCTCTATGTTTCATTTTCTCTCTCGGAACACCCGTGGTTTGTTATAAATGAAGGTTAAAAGTTGCGAATTTATCTTGATGAACACACATAAACAACTTGAATGGCTAGTACTGGACGGTACCTAGAACACTCTCCGGTGATTCGTTGAAAATGAAAAAAAGATAATTTGATTAAGTGTGTATACCAGTTAAAATGTGAGAAACAACAGAAAATTGGCTAAGGAATTAGAAA</canonical_amplicon>
		<polymorphic_amplicon>CAATTAAACAACATCACTTCCTCTATGTTTCATTTTCTCTCTCGGAACACCCGTGGTTTGTTATAAATGAAGGTTAAAAGTTGCGAATTTATCTTGATGAACACACATAAACAACTTGAATGGCTAGTACTGGACGGTACCTARAACACTCTCCGGTGATTCGTTGAAAATGAAAAAAAGATAATTTGATTAAGTGTGTATACCAGTTAAAATGTGAGAAACAACAGAAAATTGGCTAAGGAATTAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25868</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>10252</contig_pos>
        <strand>+</strand>
        <context>GAGAAATCGA[C/T]GCCTCCCCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCCAAATGTTTATTTATTTTCAGCTCATCATTTTTCGGGAGAAATCGA</left_flank>
        <right_flank>GCCTCCCCTCTCCGAACCTTCCCTTCCCACCCAATCCACGTCTTCTTCCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACGCTGTTGTGATTTTCATGATGAAGCATTACTGTCAAGCGATAAATCAGCTCAAAGTTTATCAGATACCGTAAACACTTTAATAGAACACCATCCGGACCATCCACTTTGAGCCTATATATCTCACTTATTTTGAAAGATATAAAAAAGTTGTCCCTTAATAAAATGTTTATCATGATGTCAGCAACATTTTATTAGTTATCCACTTTTTGAGATCTCTCACAGAATATTAGAGACATAGGATGAAATATTACGATTCGGGTGGAGTTCTATTAGAGTGTTTACGGCAGTTTGAAAATTGGCTAATTTACTAACGAATTTAATTTTTGCAATCCAAATTTGAGCCCAGTACAAAGCCCGATTCAAAATTTTATGCTAGTAGAAACTTGAGTACAGGGAATTATGCGCCACCCTGTACATCCTTAGCACTTCACCTGCTTGTGCTCAATTCCCAAATGTTTATTTATTTTCAGCTCATCATTTTTCGGGAGAAATCGATGCCTCCCCTCTCCGAACCTTCCCTTCCCACCCAATCCACGTCTTCTTCCATCACACTTGTCTTCTTTTCATTTCCCAAAACTCTGGACGGATGCTAGCTCACAAATCTCTTTTCGACATGGATCTCCTTATTTTCAAAGATCAAAAAATCTCATTCGTCTGCAAATCTCCTTTGGAACTCTGGTCGATCCATATGGAAAATTCGGAGAAACTCTCGGATTTGATGAGTGAAGCAATCGAGATTCGAGGACTCCCAGTTATTATTAATGACGTCGTCGAACATAAGAAGAGAGGAGAGGAACCAGAATACGTGCAGATACCTTCTTCAGTGTACACGGATTTCTAAATTGGCTCAATTTAAAACAAATTGCACATATTTACATCTTTGTATCATTTTTCGTGTCTTTTATTGCTCTCTACTTGTTTCATAAAAATCTAAAACATAACATTTTGTTGTTGAAAGGTTGACCTAGTAATTCGATTAATCGGATTGGATTAGAA</canonical>
            <polymorphic>CACGCTGTTGTGATTTTCATGATGAAGCATTACTGTCAAGCGATAAATCAGCTCAAAGTTTATCAGATACCGTAAACACTTTAATAGAACACCATCCGGACCATCCACTTTGAGCCTATATATCTCACTTATTTTGAAAGATATAAAAAAGTTGTCCCTTAATAAAATGTTTATCATGATGTCAGCAACATTTTATTAGTTATCCACTTTTTGAGATCTCTCACAGAATATTAGAGACATAGGATGAAATATTACGATTCGGGTGGAGTTCTATTAGAGTGTTTACGGCAGTTTGAAAATTGGCTAATTTACTAACGAATTTAATTTTTGCAATCCAAATTTGAGCCCAGTACAAAGCCCGATTCAAAATTTTATGCTAGTAGAAACTTGAGTACAGGGAATTATGCGCCACCCTGTACATCCTTAGCACTTCACCTGCTTGTGCTCAATTCCCAAATGTTTATTTATTTTCAGCTCATCATTTTTCGGGAGAAATCGAYGCCTCCCCTCTCCGAACCTTCCCTTCCCACCCAATCCACGTCTTCTTCCATCACACTTGTCTTCTTTTCATTTCCCAAAACTCTGGACGGATGCTAGCTCACAAATCTCTTTTCGACATGGATCTCCTTATTTTCAAAGATCAAAAAATCTCATTCGTCTGCAAATCTCCTTTGGAACTCTGGTCGATCCATATGGAAAATTCGGAGAAACTCTCGGATTTGATGAGTGAAGCAATCGAGATTCGAGGACTCCCAGTTATTATTAATGACGTCGTCGAACATAAGAAGAGAGGAGAGGAACCAGAATACGTGCAGATACCTTCTTCAGTGTACACGGATTTCTAAATTGGCTCAATTTAAAACAAATTGCACATATTTACATCTTTGTATCATTTTTCGTGTCTTTTATTGCTCTCTACTTGTTTCATAAAAATCTAAAACATAACATTTTGTTGTTGAAAGGTTGACCTAGTAATTCGATTAATCGGATTGGATTAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAATTCCCAAATGTTTATTTA</pcr_primer_p1>
		<pcr_primer_p2>CATATGGATCGACCAGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTCAATTCCCAAATGTTTATTTATTTTCAGCTCATCATTTTTCGGGAGAAATCGATGCCTCCCCTCTCCGAACCTTCCCTTCCCACCCAATCCACGTCTTCTTCCATCACACTTGTCTTCTTTTCATTTCCCAAAACTCTGGACGGATGCTAGCTCACAAATCTCTTTTCGACATGGATCTCCTTATTTTCAAAGATCAAAAAATCTCATTCGTCTGCAAATCTCCTTTGGAACTCTGGTCGATCCATATG</canonical_amplicon>
		<polymorphic_amplicon>CTCAATTCCCAAATGTTTATTTATTTTCAGCTCATCATTTTTCGGGAGAAATCGAYGCCTCCCCTCTCCGAACCTTCCCTTCCCACCCAATCCACGTCTTCTTCCATCACACTTGTCTTCTTTTCATTTCCCAAAACTCTGGACGGATGCTAGCTCACAAATCTCTTTTCGACATGGATCTCCTTATTTTCAAAGATCAAAAAATCTCATTCGTCTGCAAATCTCCTTTGGAACTCTGGTCGATCCATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25869</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>10342</contig_pos>
        <strand>+</strand>
        <context>ACTCTGGACG[A/G]ATGCTAGCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCTTCTTCCATCACACTTGTCTTCTTTTCATTTCCCAAAACTCTGGACG</left_flank>
        <right_flank>ATGCTAGCTCACAAATCTCTTTTCGACATGGATCTCCTTATTTTCAAAGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCATCCGGACCATCCACTTTGAGCCTATATATCTCACTTATTTTGAAAGATATAAAAAAGTTGTCCCTTAATAAAATGTTTATCATGATGTCAGCAACATTTTATTAGTTATCCACTTTTTGAGATCTCTCACAGAATATTAGAGACATAGGATGAAATATTACGATTCGGGTGGAGTTCTATTAGAGTGTTTACGGCAGTTTGAAAATTGGCTAATTTACTAACGAATTTAATTTTTGCAATCCAAATTTGAGCCCAGTACAAAGCCCGATTCAAAATTTTATGCTAGTAGAAACTTGAGTACAGGGAATTATGCGCCACCCTGTACATCCTTAGCACTTCACCTGCTTGTGCTCAATTCCCAAATGTTTATTTATTTTCAGCTCATCATTTTTCGGGAGAAATCGATGCCTCCCCTCTCCGAACCTTCCCTTCCCACCCAATCCACGTCTTCTTCCATCACACTTGTCTTCTTTTCATTTCCCAAAACTCTGGACGGATGCTAGCTCACAAATCTCTTTTCGACATGGATCTCCTTATTTTCAAAGATCAAAAAATCTCATTCGTCTGCAAATCTCCTTTGGAACTCTGGTCGATCCATATGGAAAATTCGGAGAAACTCTCGGATTTGATGAGTGAAGCAATCGAGATTCGAGGACTCCCAGTTATTATTAATGACGTCGTCGAACATAAGAAGAGAGGAGAGGAACCAGAATACGTGCAGATACCTTCTTCAGTGTACACGGATTTCTAAATTGGCTCAATTTAAAACAAATTGCACATATTTACATCTTTGTATCATTTTTCGTGTCTTTTATTGCTCTCTACTTGTTTCATAAAAATCTAAAACATAACATTTTGTTGTTGAAAGGTTGACCTAGTAATTCGATTAATCGGATTGGATTAGAAGAAATTTTATGGATGTTTTATGATTTGTACGAATCCCATGTGCTCTTTTTGACCAAAATGGCACTCACAGAAATTGAAAAAGAAGATTCC</canonical>
            <polymorphic>ACCATCCGGACCATCCACTTTGAGCCTATATATCTCACTTATTTTGAAAGATATAAAAAAGTTGTCCCTTAATAAAATGTTTATCATGATGTCAGCAACATTTTATTAGTTATCCACTTTTTGAGATCTCTCACAGAATATTAGAGACATAGGATGAAATATTACGATTCGGGTGGAGTTCTATTAGAGTGTTTACGGCAGTTTGAAAATTGGCTAATTTACTAACGAATTTAATTTTTGCAATCCAAATTTGAGCCCAGTACAAAGCCCGATTCAAAATTTTATGCTAGTAGAAACTTGAGTACAGGGAATTATGCGCCACCCTGTACATCCTTAGCACTTCACCTGCTTGTGCTCAATTCCCAAATGTTTATTTATTTTCAGCTCATCATTTTTCGGGAGAAATCGATGCCTCCCCTCTCCGAACCTTCCCTTCCCACCCAATCCACGTCTTCTTCCATCACACTTGTCTTCTTTTCATTTCCCAAAACTCTGGACGRATGCTAGCTCACAAATCTCTTTTCGACATGGATCTCCTTATTTTCAAAGATCAAAAAATCTCATTCGTCTGCAAATCTCCTTTGGAACTCTGGTCGATCCATATGGAAAATTCGGAGAAACTCTCGGATTTGATGAGTGAAGCAATCGAGATTCGAGGACTCCCAGTTATTATTAATGACGTCGTCGAACATAAGAAGAGAGGAGAGGAACCAGAATACGTGCAGATACCTTCTTCAGTGTACACGGATTTCTAAATTGGCTCAATTTAAAACAAATTGCACATATTTACATCTTTGTATCATTTTTCGTGTCTTTTATTGCTCTCTACTTGTTTCATAAAAATCTAAAACATAACATTTTGTTGTTGAAAGGTTGACCTAGTAATTCGATTAATCGGATTGGATTAGAAGAAATTTTATGGATGTTTTATGATTTGTACGAATCCCATGTGCTCTTTTTGACCAAAATGGCACTCACAGAAATTGAAAAAGAAGATTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTATTTTCAGCTCATCATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AGTTTCTCCGAATTTTCCATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTATTTTCAGCTCATCATTTTTCGGGAGAAATCGATGCCTCCCCTCTCCGAACCTTCCCTTCCCACCCAATCCACGTCTTCTTCCATCACACTTGTCTTCTTTTCATTTCCCAAAACTCTGGACGGATGCTAGCTCACAAATCTCTTTTCGACATGGATCTCCTTATTTTCAAAGATCAAAAAATCTCATTCGTCTGCAAATCTCCTTTGGAACTCTGGTCGATCCATATGGAAAATTCGGAGAAACT</canonical_amplicon>
		<polymorphic_amplicon>TTTATTTTCAGCTCATCATTTTTCGGGAGAAATCGATGCCTCCCCTCTCCGAACCTTCCCTTCCCACCCAATCCACGTCTTCTTCCATCACACTTGTCTTCTTTTCATTTCCCAAAACTCTGGACGRATGCTAGCTCACAAATCTCTTTTCGACATGGATCTCCTTATTTTCAAAGATCAAAAAATCTCATTCGTCTGCAAATCTCCTTTGGAACTCTGGTCGATCCATATGGAAAATTCGGAGAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25870</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>10391</contig_pos>
        <strand>+</strand>
        <context>TATTTTCAAA[A/G]ATCAAAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGATGCTAGCTCACAAATCTCTTTTCGACATGGATCTCCTTATTTTCAAA</left_flank>
        <right_flank>ATCAAAAAATCTCATTCGTCTGCAAATCTCCTTTGGAACTCTGGTCGATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATATAAAAAAGTTGTCCCTTAATAAAATGTTTATCATGATGTCAGCAACATTTTATTAGTTATCCACTTTTTGAGATCTCTCACAGAATATTAGAGACATAGGATGAAATATTACGATTCGGGTGGAGTTCTATTAGAGTGTTTACGGCAGTTTGAAAATTGGCTAATTTACTAACGAATTTAATTTTTGCAATCCAAATTTGAGCCCAGTACAAAGCCCGATTCAAAATTTTATGCTAGTAGAAACTTGAGTACAGGGAATTATGCGCCACCCTGTACATCCTTAGCACTTCACCTGCTTGTGCTCAATTCCCAAATGTTTATTTATTTTCAGCTCATCATTTTTCGGGAGAAATCGATGCCTCCCCTCTCCGAACCTTCCCTTCCCACCCAATCCACGTCTTCTTCCATCACACTTGTCTTCTTTTCATTTCCCAAAACTCTGGACGGATGCTAGCTCACAAATCTCTTTTCGACATGGATCTCCTTATTTTCAAAGATCAAAAAATCTCATTCGTCTGCAAATCTCCTTTGGAACTCTGGTCGATCCATATGGAAAATTCGGAGAAACTCTCGGATTTGATGAGTGAAGCAATCGAGATTCGAGGACTCCCAGTTATTATTAATGACGTCGTCGAACATAAGAAGAGAGGAGAGGAACCAGAATACGTGCAGATACCTTCTTCAGTGTACACGGATTTCTAAATTGGCTCAATTTAAAACAAATTGCACATATTTACATCTTTGTATCATTTTTCGTGTCTTTTATTGCTCTCTACTTGTTTCATAAAAATCTAAAACATAACATTTTGTTGTTGAAAGGTTGACCTAGTAATTCGATTAATCGGATTGGATTAGAAGAAATTTTATGGATGTTTTATGATTTGTACGAATCCCATGTGCTCTTTTTGACCAAAATGGCACTCACAGAAATTGAAAAAGAAGATTCCAGAAAAAACACGAAGAGGTATTACTAGAAAAAAAAGTGATTCATCAAAC</canonical>
            <polymorphic>GATATAAAAAAGTTGTCCCTTAATAAAATGTTTATCATGATGTCAGCAACATTTTATTAGTTATCCACTTTTTGAGATCTCTCACAGAATATTAGAGACATAGGATGAAATATTACGATTCGGGTGGAGTTCTATTAGAGTGTTTACGGCAGTTTGAAAATTGGCTAATTTACTAACGAATTTAATTTTTGCAATCCAAATTTGAGCCCAGTACAAAGCCCGATTCAAAATTTTATGCTAGTAGAAACTTGAGTACAGGGAATTATGCGCCACCCTGTACATCCTTAGCACTTCACCTGCTTGTGCTCAATTCCCAAATGTTTATTTATTTTCAGCTCATCATTTTTCGGGAGAAATCGATGCCTCCCCTCTCCGAACCTTCCCTTCCCACCCAATCCACGTCTTCTTCCATCACACTTGTCTTCTTTTCATTTCCCAAAACTCTGGACGGATGCTAGCTCACAAATCTCTTTTCGACATGGATCTCCTTATTTTCAAARATCAAAAAATCTCATTCGTCTGCAAATCTCCTTTGGAACTCTGGTCGATCCATATGGAAAATTCGGAGAAACTCTCGGATTTGATGAGTGAAGCAATCGAGATTCGAGGACTCCCAGTTATTATTAATGACGTCGTCGAACATAAGAAGAGAGGAGAGGAACCAGAATACGTGCAGATACCTTCTTCAGTGTACACGGATTTCTAAATTGGCTCAATTTAAAACAAATTGCACATATTTACATCTTTGTATCATTTTTCGTGTCTTTTATTGCTCTCTACTTGTTTCATAAAAATCTAAAACATAACATTTTGTTGTTGAAAGGTTGACCTAGTAATTCGATTAATCGGATTGGATTAGAAGAAATTTTATGGATGTTTTATGATTTGTACGAATCCCATGTGCTCTTTTTGACCAAAATGGCACTCACAGAAATTGAAAAAGAAGATTCCAGAAAAAACACGAAGAGGTATTACTAGAAAAAAAAGTGATTCATCAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>454 406 75 47 18</canonical_bands>
                <polymorphic_bands>454 406 75 65</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCACACTTGTCTTCTTTTCATTT</pcr_primer_p1>
		<pcr_primer_p2>TTCCTCTCCTCTCTTCTTATGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCACACTTGTCTTCTTTTCATTTCCCAAAACTCTGGACGGATGCTAGCTCACAAATCTCTTTTCGACATGGATCTCCTTATTTTCAAAGATCAAAAAATCTCATTCGTCTGCAAATCTCCTTTGGAACTCTGGTCGATCCATATGGAAAATTCGGAGAAACTCTCGGATTTGATGAGTGAAGCAATCGAGATTCGAGGACTCCCAGTTATTATTAATGACGTCGTCGAACATAAGAAGAGAGGAGAGGAA</canonical_amplicon>
		<polymorphic_amplicon>TCACACTTGTCTTCTTTTCATTTCCCAAAACTCTGGACGGATGCTAGCTCACAAATCTCTTTTCGACATGGATCTCCTTATTTTCAAARATCAAAAAATCTCATTCGTCTGCAAATCTCCTTTGGAACTCTGGTCGATCCATATGGAAAATTCGGAGAAACTCTCGGATTTGATGAGTGAAGCAATCGAGATTCGAGGACTCCCAGTTATTATTAATGACGTCGTCGAACATAAGAAGAGAGGAGAGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25871</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>10507</contig_pos>
        <strand>+</strand>
        <context>GAGGACTCCC[A/T]GTTATTATTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGAAACTCTCGGATTTGATGAGTGAAGCAATCGAGATTCGAGGACTCCC</left_flank>
        <right_flank>GTTATTATTAATGACGTCGTCGAACATAAGAAGAGAGGAGAGGAACCAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTCGGGTGGAGTTCTATTAGAGTGTTTACGGCAGTTTGAAAATTGGCTAATTTACTAACGAATTTAATTTTTGCAATCCAAATTTGAGCCCAGTACAAAGCCCGATTCAAAATTTTATGCTAGTAGAAACTTGAGTACAGGGAATTATGCGCCACCCTGTACATCCTTAGCACTTCACCTGCTTGTGCTCAATTCCCAAATGTTTATTTATTTTCAGCTCATCATTTTTCGGGAGAAATCGATGCCTCCCCTCTCCGAACCTTCCCTTCCCACCCAATCCACGTCTTCTTCCATCACACTTGTCTTCTTTTCATTTCCCAAAACTCTGGACGGATGCTAGCTCACAAATCTCTTTTCGACATGGATCTCCTTATTTTCAAAGATCAAAAAATCTCATTCGTCTGCAAATCTCCTTTGGAACTCTGGTCGATCCATATGGAAAATTCGGAGAAACTCTCGGATTTGATGAGTGAAGCAATCGAGATTCGAGGACTCCCAGTTATTATTAATGACGTCGTCGAACATAAGAAGAGAGGAGAGGAACCAGAATACGTGCAGATACCTTCTTCAGTGTACACGGATTTCTAAATTGGCTCAATTTAAAACAAATTGCACATATTTACATCTTTGTATCATTTTTCGTGTCTTTTATTGCTCTCTACTTGTTTCATAAAAATCTAAAACATAACATTTTGTTGTTGAAAGGTTGACCTAGTAATTCGATTAATCGGATTGGATTAGAAGAAATTTTATGGATGTTTTATGATTTGTACGAATCCCATGTGCTCTTTTTGACCAAAATGGCACTCACAGAAATTGAAAAAGAAGATTCCAGAAAAAACACGAAGAGGTATTACTAGAAAAAAAAGTGATTCATCAAACTAGAAAAATTTTTTGAACTTCAGTCCTTTTTTGCCAGCACTTTCGATTGACGGGTCTTTTTTCTGGGCATGGACAATACATAGTTTTCGATACGGTAAAGGTAGTCTACGGTGAAC</canonical>
            <polymorphic>GATTCGGGTGGAGTTCTATTAGAGTGTTTACGGCAGTTTGAAAATTGGCTAATTTACTAACGAATTTAATTTTTGCAATCCAAATTTGAGCCCAGTACAAAGCCCGATTCAAAATTTTATGCTAGTAGAAACTTGAGTACAGGGAATTATGCGCCACCCTGTACATCCTTAGCACTTCACCTGCTTGTGCTCAATTCCCAAATGTTTATTTATTTTCAGCTCATCATTTTTCGGGAGAAATCGATGCCTCCCCTCTCCGAACCTTCCCTTCCCACCCAATCCACGTCTTCTTCCATCACACTTGTCTTCTTTTCATTTCCCAAAACTCTGGACGGATGCTAGCTCACAAATCTCTTTTCGACATGGATCTCCTTATTTTCAAAGATCAAAAAATCTCATTCGTCTGCAAATCTCCTTTGGAACTCTGGTCGATCCATATGGAAAATTCGGAGAAACTCTCGGATTTGATGAGTGAAGCAATCGAGATTCGAGGACTCCCWGTTATTATTAATGACGTCGTCGAACATAAGAAGAGAGGAGAGGAACCAGAATACGTGCAGATACCTTCTTCAGTGTACACGGATTTCTAAATTGGCTCAATTTAAAACAAATTGCACATATTTACATCTTTGTATCATTTTTCGTGTCTTTTATTGCTCTCTACTTGTTTCATAAAAATCTAAAACATAACATTTTGTTGTTGAAAGGTTGACCTAGTAATTCGATTAATCGGATTGGATTAGAAGAAATTTTATGGATGTTTTATGATTTGTACGAATCCCATGTGCTCTTTTTGACCAAAATGGCACTCACAGAAATTGAAAAAGAAGATTCCAGAAAAAACACGAAGAGGTATTACTAGAAAAAAAAGTGATTCATCAAACTAGAAAAATTTTTTGAACTTCAGTCCTTTTTTGCCAGCACTTTCGATTGACGGGTCTTTTTTCTGGGCATGGACAATACATAGTTTTCGATACGGTAAAGGTAGTCTACGGTGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTTTTCATTTCCCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GTATTCTGGTTCCTCTCCTCTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTCTTTTCATTTCCCAAAACTCTGGACGGATGCTAGCTCACAAATCTCTTTTCGACATGGATCTCCTTATTTTCAAAGATCAAAAAATCTCATTCGTCTGCAAATCTCCTTTGGAACTCTGGTCGATCCATATGGAAAATTCGGAGAAACTCTCGGATTTGATGAGTGAAGCAATCGAGATTCGAGGACTCCCAGTTATTATTAATGACGTCGTCGAACATAAGAAGAGAGGAGAGGAACCAGAATAC</canonical_amplicon>
		<polymorphic_amplicon>CTTCTTTTCATTTCCCAAAACTCTGGACGGATGCTAGCTCACAAATCTCTTTTCGACATGGATCTCCTTATTTTCAAAGATCAAAAAATCTCATTCGTCTGCAAATCTCCTTTGGAACTCTGGTCGATCCATATGGAAAATTCGGAGAAACTCTCGGATTTGATGAGTGAAGCAATCGAGATTCGAGGACTCCCWGTTATTATTAATGACGTCGTCGAACATAAGAAGAGAGGAGAGGAACCAGAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25872</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>10588</contig_pos>
        <strand>+</strand>
        <context>CAGTGTACAC[C/G]GATTTCTAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAGAGAGGAGAGGAACCAGAATACGTGCAGATACCTTCTTCAGTGTACAC</left_flank>
        <right_flank>GATTTCTAAATTGGCTCAATTTAAAACAAATTGCACATATTTACATCTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTGAGCCCAGTACAAAGCCCGATTCAAAATTTTATGCTAGTAGAAACTTGAGTACAGGGAATTATGCGCCACCCTGTACATCCTTAGCACTTCACCTGCTTGTGCTCAATTCCCAAATGTTTATTTATTTTCAGCTCATCATTTTTCGGGAGAAATCGATGCCTCCCCTCTCCGAACCTTCCCTTCCCACCCAATCCACGTCTTCTTCCATCACACTTGTCTTCTTTTCATTTCCCAAAACTCTGGACGGATGCTAGCTCACAAATCTCTTTTCGACATGGATCTCCTTATTTTCAAAGATCAAAAAATCTCATTCGTCTGCAAATCTCCTTTGGAACTCTGGTCGATCCATATGGAAAATTCGGAGAAACTCTCGGATTTGATGAGTGAAGCAATCGAGATTCGAGGACTCCCAGTTATTATTAATGACGTCGTCGAACATAAGAAGAGAGGAGAGGAACCAGAATACGTGCAGATACCTTCTTCAGTGTACACGGATTTCTAAATTGGCTCAATTTAAAACAAATTGCACATATTTACATCTTTGTATCATTTTTCGTGTCTTTTATTGCTCTCTACTTGTTTCATAAAAATCTAAAACATAACATTTTGTTGTTGAAAGGTTGACCTAGTAATTCGATTAATCGGATTGGATTAGAAGAAATTTTATGGATGTTTTATGATTTGTACGAATCCCATGTGCTCTTTTTGACCAAAATGGCACTCACAGAAATTGAAAAAGAAGATTCCAGAAAAAACACGAAGAGGTATTACTAGAAAAAAAAGTGATTCATCAAACTAGAAAAATTTTTTGAACTTCAGTCCTTTTTTGCCAGCACTTTCGATTGACGGGTCTTTTTTCTGGGCATGGACAATACATAGTTTTCGATACGGTAAAGGTAGTCTACGGTGAACCTTTTATAGCGTCTTTTTTTTTCGAAAACGTTCGATTCACAGAAGACTAGAATAAGGTTACTGTAGTTGAATTCAGACTTT</canonical>
            <polymorphic>AAATTTGAGCCCAGTACAAAGCCCGATTCAAAATTTTATGCTAGTAGAAACTTGAGTACAGGGAATTATGCGCCACCCTGTACATCCTTAGCACTTCACCTGCTTGTGCTCAATTCCCAAATGTTTATTTATTTTCAGCTCATCATTTTTCGGGAGAAATCGATGCCTCCCCTCTCCGAACCTTCCCTTCCCACCCAATCCACGTCTTCTTCCATCACACTTGTCTTCTTTTCATTTCCCAAAACTCTGGACGGATGCTAGCTCACAAATCTCTTTTCGACATGGATCTCCTTATTTTCAAAGATCAAAAAATCTCATTCGTCTGCAAATCTCCTTTGGAACTCTGGTCGATCCATATGGAAAATTCGGAGAAACTCTCGGATTTGATGAGTGAAGCAATCGAGATTCGAGGACTCCCAGTTATTATTAATGACGTCGTCGAACATAAGAAGAGAGGAGAGGAACCAGAATACGTGCAGATACCTTCTTCAGTGTACACSGATTTCTAAATTGGCTCAATTTAAAACAAATTGCACATATTTACATCTTTGTATCATTTTTCGTGTCTTTTATTGCTCTCTACTTGTTTCATAAAAATCTAAAACATAACATTTTGTTGTTGAAAGGTTGACCTAGTAATTCGATTAATCGGATTGGATTAGAAGAAATTTTATGGATGTTTTATGATTTGTACGAATCCCATGTGCTCTTTTTGACCAAAATGGCACTCACAGAAATTGAAAAAGAAGATTCCAGAAAAAACACGAAGAGGTATTACTAGAAAAAAAAGTGATTCATCAAACTAGAAAAATTTTTTGAACTTCAGTCCTTTTTTGCCAGCACTTTCGATTGACGGGTCTTTTTTCTGGGCATGGACAATACATAGTTTTCGATACGGTAAAGGTAGTCTACGGTGAACCTTTTATAGCGTCTTTTTTTTTCGAAAACGTTCGATTCACAGAAGACTAGAATAAGGTTACTGTAGTTGAATTCAGACTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATAAGAAGAGAGGAGAGGAAC</pcr_primer_p1>
		<pcr_primer_p2>ACAAATCATAAAACATCCATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATAAGAAGAGAGGAGAGGAACCAGAATACGTGCAGATACCTTCTTCAGTGTACACGGATTTCTAAATTGGCTCAATTTAAAACAAATTGCACATATTTACATCTTTGTATCATTTTTCGTGTCTTTTATTGCTCTCTACTTGTTTCATAAAAATCTAAAACATAACATTTTGTTGTTGAAAGGTTGACCTAGTAATTCGATTAATCGGATTGGATTAGAAGAAATTTTATGGATGTTTTATGATTTGT</canonical_amplicon>
		<polymorphic_amplicon>ACATAAGAAGAGAGGAGAGGAACCAGAATACGTGCAGATACCTTCTTCAGTGTACACSGATTTCTAAATTGGCTCAATTTAAAACAAATTGCACATATTTACATCTTTGTATCATTTTTCGTGTCTTTTATTGCTCTCTACTTGTTTCATAAAAATCTAAAACATAACATTTTGTTGTTGAAAGGTTGACCTAGTAATTCGATTAATCGGATTGGATTAGAAGAAATTTTATGGATGTTTTATGATTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25873</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>10633</contig_pos>
        <strand>+</strand>
        <context>ACATATTTAC[A/C]TCTTTGTATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TACACGGATTTCTAAATTGGCTCAATTTAAAACAAATTGCACATATTTAC</left_flank>
        <right_flank>TCTTTGTATCATTTTTCGTGTCTTTTATTGCTCTCTACTTGTTTCATAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAACTTGAGTACAGGGAATTATGCGCCACCCTGTACATCCTTAGCACTTCACCTGCTTGTGCTCAATTCCCAAATGTTTATTTATTTTCAGCTCATCATTTTTCGGGAGAAATCGATGCCTCCCCTCTCCGAACCTTCCCTTCCCACCCAATCCACGTCTTCTTCCATCACACTTGTCTTCTTTTCATTTCCCAAAACTCTGGACGGATGCTAGCTCACAAATCTCTTTTCGACATGGATCTCCTTATTTTCAAAGATCAAAAAATCTCATTCGTCTGCAAATCTCCTTTGGAACTCTGGTCGATCCATATGGAAAATTCGGAGAAACTCTCGGATTTGATGAGTGAAGCAATCGAGATTCGAGGACTCCCAGTTATTATTAATGACGTCGTCGAACATAAGAAGAGAGGAGAGGAACCAGAATACGTGCAGATACCTTCTTCAGTGTACACGGATTTCTAAATTGGCTCAATTTAAAACAAATTGCACATATTTACATCTTTGTATCATTTTTCGTGTCTTTTATTGCTCTCTACTTGTTTCATAAAAATCTAAAACATAACATTTTGTTGTTGAAAGGTTGACCTAGTAATTCGATTAATCGGATTGGATTAGAAGAAATTTTATGGATGTTTTATGATTTGTACGAATCCCATGTGCTCTTTTTGACCAAAATGGCACTCACAGAAATTGAAAAAGAAGATTCCAGAAAAAACACGAAGAGGTATTACTAGAAAAAAAAGTGATTCATCAAACTAGAAAAATTTTTTGAACTTCAGTCCTTTTTTGCCAGCACTTTCGATTGACGGGTCTTTTTTCTGGGCATGGACAATACATAGTTTTCGATACGGTAAAGGTAGTCTACGGTGAACCTTTTATAGCGTCTTTTTTTTTCGAAAACGTTCGATTCACAGAAGACTAGAATAAGGTTACTGTAGTTGAATTCAGACTTTGGATTTCCTTTTTCTAGAGCTCATAGATTTAAAAATAGTTCCGTT</canonical>
            <polymorphic>AGAAACTTGAGTACAGGGAATTATGCGCCACCCTGTACATCCTTAGCACTTCACCTGCTTGTGCTCAATTCCCAAATGTTTATTTATTTTCAGCTCATCATTTTTCGGGAGAAATCGATGCCTCCCCTCTCCGAACCTTCCCTTCCCACCCAATCCACGTCTTCTTCCATCACACTTGTCTTCTTTTCATTTCCCAAAACTCTGGACGGATGCTAGCTCACAAATCTCTTTTCGACATGGATCTCCTTATTTTCAAAGATCAAAAAATCTCATTCGTCTGCAAATCTCCTTTGGAACTCTGGTCGATCCATATGGAAAATTCGGAGAAACTCTCGGATTTGATGAGTGAAGCAATCGAGATTCGAGGACTCCCAGTTATTATTAATGACGTCGTCGAACATAAGAAGAGAGGAGAGGAACCAGAATACGTGCAGATACCTTCTTCAGTGTACACGGATTTCTAAATTGGCTCAATTTAAAACAAATTGCACATATTTACMTCTTTGTATCATTTTTCGTGTCTTTTATTGCTCTCTACTTGTTTCATAAAAATCTAAAACATAACATTTTGTTGTTGAAAGGTTGACCTAGTAATTCGATTAATCGGATTGGATTAGAAGAAATTTTATGGATGTTTTATGATTTGTACGAATCCCATGTGCTCTTTTTGACCAAAATGGCACTCACAGAAATTGAAAAAGAAGATTCCAGAAAAAACACGAAGAGGTATTACTAGAAAAAAAAGTGATTCATCAAACTAGAAAAATTTTTTGAACTTCAGTCCTTTTTTGCCAGCACTTTCGATTGACGGGTCTTTTTTCTGGGCATGGACAATACATAGTTTTCGATACGGTAAAGGTAGTCTACGGTGAACCTTTTATAGCGTCTTTTTTTTTCGAAAACGTTCGATTCACAGAAGACTAGAATAAGGTTACTGTAGTTGAATTCAGACTTTGGATTTCCTTTTTCTAGAGCTCATAGATTTAAAAATAGTTCCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATAAGAAGAGAGGAGAGGAAC</pcr_primer_p1>
		<pcr_primer_p2>ACAAATCATAAAACATCCATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATAAGAAGAGAGGAGAGGAACCAGAATACGTGCAGATACCTTCTTCAGTGTACACGGATTTCTAAATTGGCTCAATTTAAAACAAATTGCACATATTTACATCTTTGTATCATTTTTCGTGTCTTTTATTGCTCTCTACTTGTTTCATAAAAATCTAAAACATAACATTTTGTTGTTGAAAGGTTGACCTAGTAATTCGATTAATCGGATTGGATTAGAAGAAATTTTATGGATGTTTTATGATTTGT</canonical_amplicon>
		<polymorphic_amplicon>ACATAAGAAGAGAGGAGAGGAACCAGAATACGTGCAGATACCTTCTTCAGTGTACACGGATTTCTAAATTGGCTCAATTTAAAACAAATTGCACATATTTACMTCTTTGTATCATTTTTCGTGTCTTTTATTGCTCTCTACTTGTTTCATAAAAATCTAAAACATAACATTTTGTTGTTGAAAGGTTGACCTAGTAATTCGATTAATCGGATTGGATTAGAAGAAATTTTATGGATGTTTTATGATTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25874</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>10655</contig_pos>
        <strand>+</strand>
        <context>TTTTTCGTGT[C/G]TTTTATTGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAATTTAAAACAAATTGCACATATTTACATCTTTGTATCATTTTTCGTGT</left_flank>
        <right_flank>TTTTATTGCTCTCTACTTGTTTCATAAAAATCTAAAACATAACATTTTGT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCGCCACCCTGTACATCCTTAGCACTTCACCTGCTTGTGCTCAATTCCCAAATGTTTATTTATTTTCAGCTCATCATTTTTCGGGAGAAATCGATGCCTCCCCTCTCCGAACCTTCCCTTCCCACCCAATCCACGTCTTCTTCCATCACACTTGTCTTCTTTTCATTTCCCAAAACTCTGGACGGATGCTAGCTCACAAATCTCTTTTCGACATGGATCTCCTTATTTTCAAAGATCAAAAAATCTCATTCGTCTGCAAATCTCCTTTGGAACTCTGGTCGATCCATATGGAAAATTCGGAGAAACTCTCGGATTTGATGAGTGAAGCAATCGAGATTCGAGGACTCCCAGTTATTATTAATGACGTCGTCGAACATAAGAAGAGAGGAGAGGAACCAGAATACGTGCAGATACCTTCTTCAGTGTACACGGATTTCTAAATTGGCTCAATTTAAAACAAATTGCACATATTTACATCTTTGTATCATTTTTCGTGTCTTTTATTGCTCTCTACTTGTTTCATAAAAATCTAAAACATAACATTTTGTTGTTGAAAGGTTGACCTAGTAATTCGATTAATCGGATTGGATTAGAAGAAATTTTATGGATGTTTTATGATTTGTACGAATCCCATGTGCTCTTTTTGACCAAAATGGCACTCACAGAAATTGAAAAAGAAGATTCCAGAAAAAACACGAAGAGGTATTACTAGAAAAAAAAGTGATTCATCAAACTAGAAAAATTTTTTGAACTTCAGTCCTTTTTTGCCAGCACTTTCGATTGACGGGTCTTTTTTCTGGGCATGGACAATACATAGTTTTCGATACGGTAAAGGTAGTCTACGGTGAACCTTTTATAGCGTCTTTTTTTTTCGAAAACGTTCGATTCACAGAAGACTAGAATAAGGTTACTGTAGTTGAATTCAGACTTTGGATTTCCTTTTTCTAGAGCTCATAGATTTAAAAATAGTTCCGTTTACCCATTCTTTCGTCGCTAAA</canonical>
            <polymorphic>ATGCGCCACCCTGTACATCCTTAGCACTTCACCTGCTTGTGCTCAATTCCCAAATGTTTATTTATTTTCAGCTCATCATTTTTCGGGAGAAATCGATGCCTCCCCTCTCCGAACCTTCCCTTCCCACCCAATCCACGTCTTCTTCCATCACACTTGTCTTCTTTTCATTTCCCAAAACTCTGGACGGATGCTAGCTCACAAATCTCTTTTCGACATGGATCTCCTTATTTTCAAAGATCAAAAAATCTCATTCGTCTGCAAATCTCCTTTGGAACTCTGGTCGATCCATATGGAAAATTCGGAGAAACTCTCGGATTTGATGAGTGAAGCAATCGAGATTCGAGGACTCCCAGTTATTATTAATGACGTCGTCGAACATAAGAAGAGAGGAGAGGAACCAGAATACGTGCAGATACCTTCTTCAGTGTACACGGATTTCTAAATTGGCTCAATTTAAAACAAATTGCACATATTTACATCTTTGTATCATTTTTCGTGTSTTTTATTGCTCTCTACTTGTTTCATAAAAATCTAAAACATAACATTTTGTTGTTGAAAGGTTGACCTAGTAATTCGATTAATCGGATTGGATTAGAAGAAATTTTATGGATGTTTTATGATTTGTACGAATCCCATGTGCTCTTTTTGACCAAAATGGCACTCACAGAAATTGAAAAAGAAGATTCCAGAAAAAACACGAAGAGGTATTACTAGAAAAAAAAGTGATTCATCAAACTAGAAAAATTTTTTGAACTTCAGTCCTTTTTTGCCAGCACTTTCGATTGACGGGTCTTTTTTCTGGGCATGGACAATACATAGTTTTCGATACGGTAAAGGTAGTCTACGGTGAACCTTTTATAGCGTCTTTTTTTTTCGAAAACGTTCGATTCACAGAAGACTAGAATAAGGTTACTGTAGTTGAATTCAGACTTTGGATTTCCTTTTTCTAGAGCTCATAGATTTAAAAATAGTTCCGTTTACCCATTCTTTCGTCGCTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATAAGAAGAGAGGAGAGGAAC</pcr_primer_p1>
		<pcr_primer_p2>ACAAATCATAAAACATCCATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATAAGAAGAGAGGAGAGGAACCAGAATACGTGCAGATACCTTCTTCAGTGTACACGGATTTCTAAATTGGCTCAATTTAAAACAAATTGCACATATTTACATCTTTGTATCATTTTTCGTGTCTTTTATTGCTCTCTACTTGTTTCATAAAAATCTAAAACATAACATTTTGTTGTTGAAAGGTTGACCTAGTAATTCGATTAATCGGATTGGATTAGAAGAAATTTTATGGATGTTTTATGATTTGT</canonical_amplicon>
		<polymorphic_amplicon>ACATAAGAAGAGAGGAGAGGAACCAGAATACGTGCAGATACCTTCTTCAGTGTACACGGATTTCTAAATTGGCTCAATTTAAAACAAATTGCACATATTTACATCTTTGTATCATTTTTCGTGTSTTTTATTGCTCTCTACTTGTTTCATAAAAATCTAAAACATAACATTTTGTTGTTGAAAGGTTGACCTAGTAATTCGATTAATCGGATTGGATTAGAAGAAATTTTATGGATGTTTTATGATTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25875</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>10704</contig_pos>
        <strand>+</strand>
        <context>ATAACATTTT[A/G]TTGTTGAAAK</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTTTATTGCTCTCTACTTGTTTCATAAAAATCTAAAACATAACATTTT</left_flank>
        <right_flank>TTGTTGAAAGGTTGACCTAGTAATTCGATTAATCGGATTGGATTAGAAGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAATGTTTATTTATTTTCAGCTCATCATTTTTCGGGAGAAATCGATGCCTCCCCTCTCCGAACCTTCCCTTCCCACCCAATCCACGTCTTCTTCCATCACACTTGTCTTCTTTTCATTTCCCAAAACTCTGGACGGATGCTAGCTCACAAATCTCTTTTCGACATGGATCTCCTTATTTTCAAAGATCAAAAAATCTCATTCGTCTGCAAATCTCCTTTGGAACTCTGGTCGATCCATATGGAAAATTCGGAGAAACTCTCGGATTTGATGAGTGAAGCAATCGAGATTCGAGGACTCCCAGTTATTATTAATGACGTCGTCGAACATAAGAAGAGAGGAGAGGAACCAGAATACGTGCAGATACCTTCTTCAGTGTACACGGATTTCTAAATTGGCTCAATTTAAAACAAATTGCACATATTTACATCTTTGTATCATTTTTCGTGTCTTTTATTGCTCTCTACTTGTTTCATAAAAATCTAAAACATAACATTTTGTTGTTGAAAGGTTGACCTAGTAATTCGATTAATCGGATTGGATTAGAAGAAATTTTATGGATGTTTTATGATTTGTACGAATCCCATGTGCTCTTTTTGACCAAAATGGCACTCACAGAAATTGAAAAAGAAGATTCCAGAAAAAACACGAAGAGGTATTACTAGAAAAAAAAGTGATTCATCAAACTAGAAAAATTTTTTGAACTTCAGTCCTTTTTTGCCAGCACTTTCGATTGACGGGTCTTTTTTCTGGGCATGGACAATACATAGTTTTCGATACGGTAAAGGTAGTCTACGGTGAACCTTTTATAGCGTCTTTTTTTTTCGAAAACGTTCGATTCACAGAAGACTAGAATAAGGTTACTGTAGTTGAATTCAGACTTTGGATTTCCTTTTTCTAGAGCTCATAGATTTAAAAATAGTTCCGTTTACCCATTCTTTCGTCGCTAAAAGTCTAGACATATCGTACCAGAAGTCCTTCCGATATTCTTTTGACATCA</canonical>
            <polymorphic>CCAAATGTTTATTTATTTTCAGCTCATCATTTTTCGGGAGAAATCGATGCCTCCCCTCTCCGAACCTTCCCTTCCCACCCAATCCACGTCTTCTTCCATCACACTTGTCTTCTTTTCATTTCCCAAAACTCTGGACGGATGCTAGCTCACAAATCTCTTTTCGACATGGATCTCCTTATTTTCAAAGATCAAAAAATCTCATTCGTCTGCAAATCTCCTTTGGAACTCTGGTCGATCCATATGGAAAATTCGGAGAAACTCTCGGATTTGATGAGTGAAGCAATCGAGATTCGAGGACTCCCAGTTATTATTAATGACGTCGTCGAACATAAGAAGAGAGGAGAGGAACCAGAATACGTGCAGATACCTTCTTCAGTGTACACGGATTTCTAAATTGGCTCAATTTAAAACAAATTGCACATATTTACATCTTTGTATCATTTTTCGTGTCTTTTATTGCTCTCTACTTGTTTCATAAAAATCTAAAACATAACATTTTRTTGTTGAAAGGTTGACCTAGTAATTCGATTAATCGGATTGGATTAGAAGAAATTTTATGGATGTTTTATGATTTGTACGAATCCCATGTGCTCTTTTTGACCAAAATGGCACTCACAGAAATTGAAAAAGAAGATTCCAGAAAAAACACGAAGAGGTATTACTAGAAAAAAAAGTGATTCATCAAACTAGAAAAATTTTTTGAACTTCAGTCCTTTTTTGCCAGCACTTTCGATTGACGGGTCTTTTTTCTGGGCATGGACAATACATAGTTTTCGATACGGTAAAGGTAGTCTACGGTGAACCTTTTATAGCGTCTTTTTTTTTCGAAAACGTTCGATTCACAGAAGACTAGAATAAGGTTACTGTAGTTGAATTCAGACTTTGGATTTCCTTTTTCTAGAGCTCATAGATTTAAAAATAGTTCCGTTTACCCATTCTTTCGTCGCTAAAAGTCTAGACATATCGTACCAGAAGTCCTTCCGATATTCTTTTGACATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATAAGAAGAGAGGAGAGGAAC</pcr_primer_p1>
		<pcr_primer_p2>ACAAATCATAAAACATCCATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATAAGAAGAGAGGAGAGGAACCAGAATACGTGCAGATACCTTCTTCAGTGTACACGGATTTCTAAATTGGCTCAATTTAAAACAAATTGCACATATTTACATCTTTGTATCATTTTTCGTGTCTTTTATTGCTCTCTACTTGTTTCATAAAAATCTAAAACATAACATTTTGTTGTTGAAAGGTTGACCTAGTAATTCGATTAATCGGATTGGATTAGAAGAAATTTTATGGATGTTTTATGATTTGT</canonical_amplicon>
		<polymorphic_amplicon>ACATAAGAAGAGAGGAGAGGAACCAGAATACGTGCAGATACCTTCTTCAGTGTACACGGATTTCTAAATTGGCTCAATTTAAAACAAATTGCACATATTTACATCTTTGTATCATTTTTCGTGTCTTTTATTGCTCTCTACTTGTTTCATAAAAATCTAAAACATAACATTTTRTTGTTGAAAGGTTGACCTAGTAATTCGATTAATCGGATTGGATTAGAAGAAATTTTATGGATGTTTTATGATTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25876</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>10714</contig_pos>
        <strand>+</strand>
        <context>RTTGTTGAAA[G/T]GTTGACCTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCTCTACTTGTTTCATAAAAATCTAAAACATAACATTTTGTTGTTGAAA</left_flank>
        <right_flank>GTTGACCTAGTAATTCGATTAATCGGATTGGATTAGAAGAAATTTTATGG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTATTTTCAGCTCATCATTTTTCGGGAGAAATCGATGCCTCCCCTCTCCGAACCTTCCCTTCCCACCCAATCCACGTCTTCTTCCATCACACTTGTCTTCTTTTCATTTCCCAAAACTCTGGACGGATGCTAGCTCACAAATCTCTTTTCGACATGGATCTCCTTATTTTCAAAGATCAAAAAATCTCATTCGTCTGCAAATCTCCTTTGGAACTCTGGTCGATCCATATGGAAAATTCGGAGAAACTCTCGGATTTGATGAGTGAAGCAATCGAGATTCGAGGACTCCCAGTTATTATTAATGACGTCGTCGAACATAAGAAGAGAGGAGAGGAACCAGAATACGTGCAGATACCTTCTTCAGTGTACACGGATTTCTAAATTGGCTCAATTTAAAACAAATTGCACATATTTACATCTTTGTATCATTTTTCGTGTCTTTTATTGCTCTCTACTTGTTTCATAAAAATCTAAAACATAACATTTTGTTGTTGAAAGGTTGACCTAGTAATTCGATTAATCGGATTGGATTAGAAGAAATTTTATGGATGTTTTATGATTTGTACGAATCCCATGTGCTCTTTTTGACCAAAATGGCACTCACAGAAATTGAAAAAGAAGATTCCAGAAAAAACACGAAGAGGTATTACTAGAAAAAAAAGTGATTCATCAAACTAGAAAAATTTTTTGAACTTCAGTCCTTTTTTGCCAGCACTTTCGATTGACGGGTCTTTTTTCTGGGCATGGACAATACATAGTTTTCGATACGGTAAAGGTAGTCTACGGTGAACCTTTTATAGCGTCTTTTTTTTTCGAAAACGTTCGATTCACAGAAGACTAGAATAAGGTTACTGTAGTTGAATTCAGACTTTGGATTTCCTTTTTCTAGAGCTCATAGATTTAAAAATAGTTCCGTTTACCCATTCTTTCGTCGCTAAAAGTCTAGACATATCGTACCAGAAGTCCTTCCGATATTCTTTTGACATCATTATTTGGAA</canonical>
            <polymorphic>ATTTATTTTCAGCTCATCATTTTTCGGGAGAAATCGATGCCTCCCCTCTCCGAACCTTCCCTTCCCACCCAATCCACGTCTTCTTCCATCACACTTGTCTTCTTTTCATTTCCCAAAACTCTGGACGGATGCTAGCTCACAAATCTCTTTTCGACATGGATCTCCTTATTTTCAAAGATCAAAAAATCTCATTCGTCTGCAAATCTCCTTTGGAACTCTGGTCGATCCATATGGAAAATTCGGAGAAACTCTCGGATTTGATGAGTGAAGCAATCGAGATTCGAGGACTCCCAGTTATTATTAATGACGTCGTCGAACATAAGAAGAGAGGAGAGGAACCAGAATACGTGCAGATACCTTCTTCAGTGTACACGGATTTCTAAATTGGCTCAATTTAAAACAAATTGCACATATTTACATCTTTGTATCATTTTTCGTGTCTTTTATTGCTCTCTACTTGTTTCATAAAAATCTAAAACATAACATTTTGTTGTTGAAAKGTTGACCTAGTAATTCGATTAATCGGATTGGATTAGAAGAAATTTTATGGATGTTTTATGATTTGTACGAATCCCATGTGCTCTTTTTGACCAAAATGGCACTCACAGAAATTGAAAAAGAAGATTCCAGAAAAAACACGAAGAGGTATTACTAGAAAAAAAAGTGATTCATCAAACTAGAAAAATTTTTTGAACTTCAGTCCTTTTTTGCCAGCACTTTCGATTGACGGGTCTTTTTTCTGGGCATGGACAATACATAGTTTTCGATACGGTAAAGGTAGTCTACGGTGAACCTTTTATAGCGTCTTTTTTTTTCGAAAACGTTCGATTCACAGAAGACTAGAATAAGGTTACTGTAGTTGAATTCAGACTTTGGATTTCCTTTTTCTAGAGCTCATAGATTTAAAAATAGTTCCGTTTACCCATTCTTTCGTCGCTAAAAGTCTAGACATATCGTACCAGAAGTCCTTCCGATATTCTTTTGACATCATTATTTGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATAAGAAGAGAGGAGAGGAAC</pcr_primer_p1>
		<pcr_primer_p2>ACAAATCATAAAACATCCATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATAAGAAGAGAGGAGAGGAACCAGAATACGTGCAGATACCTTCTTCAGTGTACACGGATTTCTAAATTGGCTCAATTTAAAACAAATTGCACATATTTACATCTTTGTATCATTTTTCGTGTCTTTTATTGCTCTCTACTTGTTTCATAAAAATCTAAAACATAACATTTTGTTGTTGAAAGGTTGACCTAGTAATTCGATTAATCGGATTGGATTAGAAGAAATTTTATGGATGTTTTATGATTTGT</canonical_amplicon>
		<polymorphic_amplicon>ACATAAGAAGAGAGGAGAGGAACCAGAATACGTGCAGATACCTTCTTCAGTGTACACGGATTTCTAAATTGGCTCAATTTAAAACAAATTGCACATATTTACATCTTTGTATCATTTTTCGTGTCTTTTATTGCTCTCTACTTGTTTCATAAAAATCTAAAACATAACATTTTGTTGTTGAAAKGTTGACCTAGTAATTCGATTAATCGGATTGGATTAGAAGAAATTTTATGGATGTTTTATGATTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25877</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>33728</contig_pos>
        <strand></strand>
        <context>TTGAATAATA[C/T]TTCATTATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAACTCTGAACAAATAGAAAGAAAATGCTTTTTCGAATGTTGAATAATA</left_flank>
        <right_flank>TTCATTATTTTCAGGTCTCTCAAAAAACCGATGATCCAGTGAACAGAATG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGACTCTCCAAAAACATTATTATTAAATCATATTAAATTTCAGACTCCCCAGAGTCCTACTACTGGAACGCCTTCCTTCTTCTCGTCGTCGGATTTTTTATTGGTGGTCCATTGAACATGATTGCTGGATGCATCACATCAGACCTCGGGAAATCTGAAGTACTACGTGGAAACGCTGAGGCATTGGCTACAGTAACCGGTATCATTGATGGTACCGGAAGTGTGGGATCTGCAATTGGGCAGTGGTTGATTCCACTTGTCAGAAATTGGTTTGGATGGGATGCCATTTTTTACGGGTTCATGATTATGGTAGGGAAACTTTTAAATTTCAAATATTTAAAAAAATCCATTGTTCCAGGTCGTATTGTCTGCTTTATGTATTTCCCCGGTTCTATGGAGAGAGCGGAAAGAAAACAAACATCAAAAGGTGAGGAGGCTTGTGACTTCAAAACTCTGAACAAATAGAAAGAAAATGCTTTTTCGAATGTTGAATAATACTTCATTATTTTCAGGTCTCTCAAAAAACCGATGATCCAGTGAACAGAATGGAAATGAGTTAACTTTTTCTTGTTTTCTTTTTCTTATCTAATAAAATTAATGAGAAAAAATAAAGCTTGTGTGAAATTTCTTTTTCTTTGTTTTCCTCCACTTCCTTTTCCTCTCTTTTCCTTCAGCATAGTTTTTCTTCTTTGACAATCTGCGTCTCTTTCACGGAGAAAAAAGAAAACGAAGCAGATTTTACTTGGATCCGAAAATCCTCCCTTTTCCTGCCCAATTGACACACTTTTCCACTTTATTTTGCCCTTTTGTTTAATTCTTTGAGTAGTAGAGGAACAGTTAATTCAGGTGCATGCCTCCTCGAATAGGACCACGTGGCACTGAAAATAAAGATTTCCTGACAAGAGTAACCGGTCAAAAATGGTCCAGAAACCATTATTTTGTGTTTTTCCATACCTTCTTCAGGTGAGCATTTGCTTTTGAAATGTCAAAAAAAAATC</canonical>
            <polymorphic>TAAGACTCTCCAAAAACATTATTATTAAATCATATTAAATTTCAGACTCCCCAGAGTCCTACTACTGGAACGCCTTCCTTCTTCTCGTCGTCGGATTTTTTATTGGTGGTCCATTGAACATGATTGCTGGATGCATCACATCAGACCTCGGGAAATCTGAAGTACTACGTGGAAACGCTGAGGCATTGGCTACAGTAACCGGTATCATTGATGGTACCGGAAGTGTGGGATCTGCAATTGGGCAGTGGTTGATTCCACTTGTCAGAAATTGGTTTGGATGGGATGCCATTTTTTACGGGTTCATGATTATGGTAGGGAAACTTTTAAATTTCAAATATTTAAAAAAATCCATTGTTCCAGGTCGTATTGTCTGCTTTATGTATTTCCCCGGTTCTATGGAGAGAGCGGAAAGAAAACAAACATCAAAAGGTGAGGAGGCTTGTGACTTCAAAACTCTGAACAAATAGAAAGAAAATGCTTTTTCGAATGTTGAATAATAYTTCATTATTTTCAGGTCTCTCAAAAAACCGATGATCCAGTGAACAGAATGGAAATGAGTTAACTTTTTCTTGTTTTCTTTTTCTTATCTAATAAAATTAATGAGAAAAAATAAAGCTTGTGTGAAATTTCTTTTTCTTTGTTTTCCTCCACTTCCTTTTCCTCTCTTTTCCTTCAGCATAGTTTTTCTTCTTTGACAATCTGCGTCTCTTTCACGGAGAAAAAAGAAAACGAAGCAGATTTTACTTGGATCCGAAAATCCTCCCTTTTCCTGCCCAATTGACACACTTTTCCACTTTATTTTGCCCTTTTGTTTAATTCTTTGAGTAGTAGAGGAACAGTTAATTCAGGTGCATGCCTCCTCGAATAGGACCACGTGGCACTGAAAATAAAGATTTCCTGACAAGAGTAACCGGTCAAAAATGGTCCAGAAACCATTATTTTGTGTTTTTCCATACCTTCTTCAGGTGAGCATTTGCTTTTGAAATGTCAAAAAAAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAAAACTCTGAACAAATAGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGTCAAAGAAGAAAAACTATGC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTCAAAACTCTGAACAAATAGAAAGAAAATGCTTTTTCGAATGTTGAATAATACTTCATTATTTTCAGGTCTCTCAAAAAACCGATGATCCAGTGAACAGAATGGAAATGAGTTAACTTTTTCTTGTTTTCTTTTTCTTATCTAATAAAATTAATGAGAAAAAATAAAGCTTGTGTGAAATTTCTTTTTCTTTGTTTTCCTCCACTTCCTTTTCCTCTCTTTTCCTTCAGCATAGTTTTTCTTCTTTGACAA</canonical_amplicon>
		<polymorphic_amplicon>TTCAAAACTCTGAACAAATAGAAAGAAAATGCTTTTTCGAATGTTGAATAATAYTTCATTATTTTCAGGTCTCTCAAAAAACCGATGATCCAGTGAACAGAATGGAAATGAGTTAACTTTTTCTTGTTTTCTTTTTCTTATCTAATAAAATTAATGAGAAAAAATAAAGCTTGTGTGAAATTTCTTTTTCTTTGTTTTCCTCCACTTCCTTTTCCTCTCTTTTCCTTCAGCATAGTTTTTCTTCTTTGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25878</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>62762</contig_pos>
        <strand></strand>
        <context>ctagtataaa[G/A]tttgagtgat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGTACAGTGTGAAGCATAATTACCAGGACTAAAGTTTGTACTAGTATAAA</left_flank>
        <right_flank>TTTGAGTGATCCGCTGTACCAGGCTCAAATTAGGAAAGCGAAAATTCAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCACCTGATTTTTCAGGAATTCTCTGTTCAGAATACAGTACCATCATTTGATTAGGACCCATTCCACATGTACCTTTGAATCTGAAACTTTAAATTAGTCAGAACCTGATACATAACACTTTCAACCAAAGACTTCCAACATGTCTTTTAAAAGTTCGAAAAACATAATTCCGCACATAATCTTTTGACTTCTCTATTGTTAGGCCTTGTCTGGGTTACACAATTGAAATAAATTCGTCCTCCTTTTTTTTTCAAAAAAAAACACGATTTTTGGAACTTGCATATCCGGAAGATCACCAAAGTACTGTATAGTATAAGATGATATTTGTTTTACGTTCTCTATTTATTTGCCAATACAGACTACATACTTTTTCCTCCAGCACATTCTTTGGAGCACCCCGAACTTTGATTCCTTCATTCATTTTTTCGATTGAATTATCATCTAGCTGTACAGTGTGAAGCATAATTACCAGGACTAAAGTTTGTACTAGTATAAAGTTTGAGTGATCCGCTGTACCAGGCTCAAATTAGGAAAGCGAAAATTCAAATAATTCATCAGTAAATTGACCGAGTTTAAAATTATTTGATCAACTTTGGGAGGAGTTATCACTTGTCAAAGTTGCTTCGTCTCATGGAAATCACAAGAAACATAACACCGTTCATTTTTGGACAATATAAAAGAACCTTGAGGAATTGCTGTGAAGTTTTCAGTAACTTTGAATCAAACTTAAAATTATATTTCTACAAATTCTCGTGCTTTCAATATGCCTATGTCTAAGGATATACCCGTTTTTATTAGTCCGGTCACCTTGTAATGGATTACTAATGTTACACAAATCTGCCCGGCAATTGTATCCTTCCCTTTACCAGAATATTTTAAAAACTGAGTTATTCTCGTATTTTCAAAACCCTCCTTCCATTTTTTTCAATTATCATATCTTCTGAGAATCAGTTAAATCTATTTATCTGTTTGTCCACAACTTCTCCGCCCTCCAAGA</canonical>
            <polymorphic>AGTCACCTGATTTTTCAGGAATTCTCTGTTCAGAATACAGTACCATCATTTGATTAGGACCCATTCCACATGTACCTTTGAATCTGAAACTTTAAATTAGTCAGAACCTGATACATAACACTTTCAACCAAAGACTTCCAACATGTCTTTTAAAAGTTCGAAAAACATAATTCCGCACATAATCTTTTGACTTCTCTATTGTTAGGCCTTGTCTGGGTTACACAATTGAAATAAATTCGTCCTCCTTTTTTTTTCAAAAAAAAACACGATTTTTGGAACTTGCATATCCGGAAGATCACCAAAGTACTGTATAGTATAAGATGATATTTGTTTTACGTTCTCTATTTATTTGCCAATACAGACTACATACTTTTTCCTCCAGCACATTCTTTGGAGCACCCCGAACTTTGATTCCTTCATTCATTTTTTCGATTGAATTATCATCTAGCTGTACAGTGTGAAGCATAATTACCAGGACTAAAGTTTGTACTAGTATAAARTTTGAGTGATCCGCTGTACCAGGCTCAAATTAGGAAAGCGAAAATTCAAATAATTCATCAGTAAATTGACCGAGTTTAAAATTATTTGATCAACTTTGGGAGGAGTTATCACTTGTCAAAGTTGCTTCGTCTCATGGAAATCACAAGAAACATAACACCGTTCATTTTTGGACAATATAAAAGAACCTTGAGGAATTGCTGTGAAGTTTTCAGTAACTTTGAATCAAACTTAAAATTATATTTCTACAAATTCTCGTGCTTTCAATATGCCTATGTCTAAGGATATACCCGTTTTTATTAGTCCGGTCACCTTGTAATGGATTACTAATGTTACACAAATCTGCCCGGCAATTGTATCCTTCCCTTTACCAGAATATTTTAAAAACTGAGTTATTCTCGTATTTTCAAAACCCTCCTTCCATTTTTTTCAATTATCATATCTTCTGAGAATCAGTTAAATCTATTTATCTGTTTGTCCACAACTTCTCCGCCCTCCAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCGATTGAATTATCATCTAGC</pcr_primer_p1>
		<pcr_primer_p2>CATTAGTAATCCATTACAAGGTGA</pcr_primer_p2>
		<pcr_amplicon_size>404</pcr_amplicon_size>
		<canonical_amplicon>TTTCGATTGAATTATCATCTAGCTGTACAGTGTGAAGCATAATTACCAGGACTAAAGTTTGTACTAGTATAAAGTTTGAGTGATCCGCTGTACCAGGCTCAAATTAGGAAAGCGAAAATTCAAATAATTCATCAGTAAATTGACCGAGTTTAAAATTATTTGATCAACTTTGGGAGGAGTTATCACTTGTCAAAGTTGCTTCGTCTCATGGAAATCACAAGAAACATAACACCGTTCATTTTTGGACAATATAAAAGAACCTTGAGGAATTGCTGTGAAGTTTTCAGTAACTTTGAATCAAACTTAAAATTATATTTCTACAAATTCTCGTGCTTTCAATATGCCTATGTCTAAGGATATACCCGTTTTTATTAGTCCGGTCACCTTGTAATGGATTACTAATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCGATTGAATTATCATCTAGCTGTACAGTGTGAAGCATAATTACCAGGACTAAAGTTTGTACTAGTATAAARTTTGAGTGATCCGCTGTACCAGGCTCAAATTAGGAAAGCGAAAATTCAAATAATTCATCAGTAAATTGACCGAGTTTAAAATTATTTGATCAACTTTGGGAGGAGTTATCACTTGTCAAAGTTGCTTCGTCTCATGGAAATCACAAGAAACATAACACCGTTCATTTTTGGACAATATAAAAGAACCTTGAGGAATTGCTGTGAAGTTTTCAGTAACTTTGAATCAAACTTAAAATTATATTTCTACAAATTCTCGTGCTTTCAATATGCCTATGTCTAAGGATATACCCGTTTTTATTAGTCCGGTCACCTTGTAATGGATTACTAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25879</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>62946</contig_pos>
        <strand></strand>
        <context>aatataaaag[A/T]accttgagga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGGAAATCACAAGAAACATAACACCGTTCATTTTTGGACAATATAAAAG</left_flank>
        <right_flank>ACCTTGAGGAATTGCTGTGAAGTTTTCAGTAACTTTGAATCAAACTTAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGACTTCTCTATTGTTAGGCCTTGTCTGGGTTACACAATTGAAATAAATTCGTCCTCCTTTTTTTTTCAAAAAAAAACACGATTTTTGGAACTTGCATATCCGGAAGATCACCAAAGTACTGTATAGTATAAGATGATATTTGTTTTACGTTCTCTATTTATTTGCCAATACAGACTACATACTTTTTCCTCCAGCACATTCTTTGGAGCACCCCGAACTTTGATTCCTTCATTCATTTTTTCGATTGAATTATCATCTAGCTGTACAGTGTGAAGCATAATTACCAGGACTAAAGTTTGTACTAGTATAAAGTTTGAGTGATCCGCTGTACCAGGCTCAAATTAGGAAAGCGAAAATTCAAATAATTCATCAGTAAATTGACCGAGTTTAAAATTATTTGATCAACTTTGGGAGGAGTTATCACTTGTCAAAGTTGCTTCGTCTCATGGAAATCACAAGAAACATAACACCGTTCATTTTTGGACAATATAAAAGAACCTTGAGGAATTGCTGTGAAGTTTTCAGTAACTTTGAATCAAACTTAAAATTATATTTCTACAAATTCTCGTGCTTTCAATATGCCTATGTCTAAGGATATACCCGTTTTTATTAGTCCGGTCACCTTGTAATGGATTACTAATGTTACACAAATCTGCCCGGCAATTGTATCCTTCCCTTTACCAGAATATTTTAAAAACTGAGTTATTCTCGTATTTTCAAAACCCTCCTTCCATTTTTTTCAATTATCATATCTTCTGAGAATCAGTTAAATCTATTTATCTGTTTGTCCACAACTTCTCCGCCCTCCAAGATTTGACCTCTCTAGAACATTTGTCCTTCTTGGTGCCTGGCTCTCCAATGTCCAGCAGTAGCAGCTGTCTTTTTTCTATCTATCTCTTCCATCCAACTGTTGTCAGAACTTGATTAAATATGAATGTGCGTAAGTATTGATTCGAAAAAACTGACCAACTTGTGTTTGAACAGCTTCCTCCGAGC</canonical>
            <polymorphic>TTTTGACTTCTCTATTGTTAGGCCTTGTCTGGGTTACACAATTGAAATAAATTCGTCCTCCTTTTTTTTTCAAAAAAAAACACGATTTTTGGAACTTGCATATCCGGAAGATCACCAAAGTACTGTATAGTATAAGATGATATTTGTTTTACGTTCTCTATTTATTTGCCAATACAGACTACATACTTTTTCCTCCAGCACATTCTTTGGAGCACCCCGAACTTTGATTCCTTCATTCATTTTTTCGATTGAATTATCATCTAGCTGTACAGTGTGAAGCATAATTACCAGGACTAAAGTTTGTACTAGTATAAAGTTTGAGTGATCCGCTGTACCAGGCTCAAATTAGGAAAGCGAAAATTCAAATAATTCATCAGTAAATTGACCGAGTTTAAAATTATTTGATCAACTTTGGGAGGAGTTATCACTTGTCAAAGTTGCTTCGTCTCATGGAAATCACAAGAAACATAACACCGTTCATTTTTGGACAATATAAAAGWACCTTGAGGAATTGCTGTGAAGTTTTCAGTAACTTTGAATCAAACTTAAAATTATATTTCTACAAATTCTCGTGCTTTCAATATGCCTATGTCTAAGGATATACCCGTTTTTATTAGTCCGGTCACCTTGTAATGGATTACTAATGTTACACAAATCTGCCCGGCAATTGTATCCTTCCCTTTACCAGAATATTTTAAAAACTGAGTTATTCTCGTATTTTCAAAACCCTCCTTCCATTTTTTTCAATTATCATATCTTCTGAGAATCAGTTAAATCTATTTATCTGTTTGTCCACAACTTCTCCGCCCTCCAAGATTTGACCTCTCTAGAACATTTGTCCTTCTTGGTGCCTGGCTCTCCAATGTCCAGCAGTAGCAGCTGTCTTTTTTCTATCTATCTCTTCCATCCAACTGTTGTCAGAACTTGATTAAATATGAATGTGCGTAAGTATTGATTCGAAAAAACTGACCAACTTGTGTTTGAACAGCTTCCTCCGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCGATTGAATTATCATCTAGC</pcr_primer_p1>
		<pcr_primer_p2>CATTAGTAATCCATTACAAGGTGA</pcr_primer_p2>
		<pcr_amplicon_size>404</pcr_amplicon_size>
		<canonical_amplicon>TTTCGATTGAATTATCATCTAGCTGTACAGTGTGAAGCATAATTACCAGGACTAAAGTTTGTACTAGTATAAAGTTTGAGTGATCCGCTGTACCAGGCTCAAATTAGGAAAGCGAAAATTCAAATAATTCATCAGTAAATTGACCGAGTTTAAAATTATTTGATCAACTTTGGGAGGAGTTATCACTTGTCAAAGTTGCTTCGTCTCATGGAAATCACAAGAAACATAACACCGTTCATTTTTGGACAATATAAAAGAACCTTGAGGAATTGCTGTGAAGTTTTCAGTAACTTTGAATCAAACTTAAAATTATATTTCTACAAATTCTCGTGCTTTCAATATGCCTATGTCTAAGGATATACCCGTTTTTATTAGTCCGGTCACCTTGTAATGGATTACTAATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCGATTGAATTATCATCTAGCTGTACAGTGTGAAGCATAATTACCAGGACTAAAGTTTGTACTAGTATAAAGTTTGAGTGATCCGCTGTACCAGGCTCAAATTAGGAAAGCGAAAATTCAAATAATTCATCAGTAAATTGACCGAGTTTAAAATTATTTGATCAACTTTGGGAGGAGTTATCACTTGTCAAAGTTGCTTCGTCTCATGGAAATCACAAGAAACATAACACCGTTCATTTTTGGACAATATAAAAGWACCTTGAGGAATTGCTGTGAAGTTTTCAGTAACTTTGAATCAAACTTAAAATTATATTTCTACAAATTCTCGTGCTTTCAATATGCCTATGTCTAAGGATATACCCGTTTTTATTAGTCCGGTCACCTTGTAATGGATTACTAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25880</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>91683</contig_pos>
        <strand></strand>
        <context>TGctctaata[G/A]aagccgacgc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CCCTTTACAGCTGCTCTGGAAAGAGGTGTAATGCCAAAAGTGCTCTAATA</left_flank>
        <right_flank>AAGCCGACGCTGTATGTGAATTTTGAACACAATTATCTGGGTCCTTTCAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCGATGAAAGACACTTGTGGCTCTGAAAACGGTAGATTTTGTTATTTATTTTGAATAATAGCTCACGAATTGCATAACCGATATGTTTGTGTCGAATGAAAACGATAACCATTTGACTCCAGGCACGGTGAGAGAGATACATGCGATGTCCACTAAAAAGTGGCTCCAGAATCCGACGGGCTTCTTCGTGGAACGTTCTGAAATATATATGATCTGTCATAGATTCCGTTCCATGAAACTCACGGAGCTGTGGATGGGATTTCTTGAAGAGAAATGAACACCAAGTCGCTCTCCATTTCTTCACCTCGATCCACAATTTTCTGTGCAAGATGGTTGAGCACTTTGGCACCCTTCTCGTTGATATTCCACGTCACCGCACACACCTTCAGTTTTCGATCTCCCATGGTTTCAACGACATCGTAGCTGACAATCGGAACATTTCCGAATCCCTTTACAGCTGCTCTGGAAAGAGGTGTAATGCCAAAAGTGCTCTAATAGAAGCCGACGCTGTATGTGAATTTTGAACACAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTTTTGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTGTCTCTCCTAATAAAGGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAGATATAAAAAATTTGTCAATTGATAAAATACTGGTCATATCATGGTAAACACATTGCTAGTTGACAAATTTTTCATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTGCACGTAAAGGATATGCTTCTATCAAATAATTCAGGTCAGAAAAATATACAATGTAACACTTACGGAGGGGGTTGAGTGTCAATGAGGAATGTCCAATTGCCGTCGCTGATTTCGTTGACTGCAAAAAATGGGGTAGTAGAAGAAC</canonical>
            <polymorphic>AAGCGATGAAAGACACTTGTGGCTCTGAAAACGGTAGATTTTGTTATTTATTTTGAATAATAGCTCACGAATTGCATAACCGATATGTTTGTGTCGAATGAAAACGATAACCATTTGACTCCAGGCACGGTGAGAGAGATACATGCGATGTCCACTAAAAAGTGGCTCCAGAATCCGACGGGCTTCTTCGTGGAACGTTCTGAAATATATATGATCTGTCATAGATTCCGTTCCATGAAACTCACGGAGCTGTGGATGGGATTTCTTGAAGAGAAATGAACACCAAGTCGCTCTCCATTTCTTCACCTCGATCCACAATTTTCTGTGCAAGATGGTTGAGCACTTTGGCACCCTTCTCGTTGATATTCCACGTCACCGCACACACCTTCAGTTTTCGATCTCCCATGGTTTCAACGACATCGTAGCTGACAATCGGAACATTTCCGAATCCCTTTACAGCTGCTCTGGAAAGAGGTGTAATGCCAAAAGTGCTCTAATARAAGCCGACGCTGTATGTGAATTTTGAACACAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTTTTGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTGTCTCTCCTAATAAAGGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAGATATAAAAAATTTGTCAATTGATAAAATACTGGTCATATCATGGTAAACACATTGCTAGTTGACAAATTTTTCATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTGCACGTAAAGGATATGCTTCTATCAAATAATTCAGGTCAGAAAAATATACAATGTAACACTTACGGAGGGGGTTGAGTGTCAATGAGGAATGTCCAATTGCCGTCGCTGATTTCGTTGACTGCAAAAAATGGGGTAGTAGAAGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATTTCCGAATCCCTTTAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCTGACCTGAATTATTTG</pcr_primer_p2>
		<pcr_amplicon_size>463</pcr_amplicon_size>
		<canonical_amplicon>ACATTTCCGAATCCCTTTACAGCTGCTCTGGAAAGAGGTGTAATGCCAAAAGTGCTCTAATAGAAGCCGACGCTGTATGTGAATTTTGAACACAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTTTTGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTGTCTCTCCTAATAAAGGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAGATATAAAAAATTTGTCAATTGATAAAATACTGGTCATATCATGGTAAACACATTGCTAGTTGACAAATTTTTCATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTGCACGTAAAGGATATGCTTCTATCAAATAATTCAGGTCAGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>ACATTTCCGAATCCCTTTACAGCTGCTCTGGAAAGAGGTGTAATGCCAAAAGTGCTCTAATARAAGCCGACGCTGTATGTGAATTTTGAACACAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTTTTGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTGTCTCTCCTAATAAAGGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAGATATAAAAAATTTGTCAATTGATAAAATACTGGTCATATCATGGTAAACACATTGCTAGTTGACAAATTTTTCATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTGCACGTAAAGGATATGCTTCTATCAAATAATTCAGGTCAGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25881</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>91712</contig_pos>
        <strand></strand>
        <context>aattttgaac[A/T]caattatctg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATGCCAAAAGTGCTCTAATAGAAGCCGACGCTGTATGTGAATTTTGAAC</left_flank>
        <right_flank>CAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACGGTAGATTTTGTTATTTATTTTGAATAATAGCTCACGAATTGCATAACCGATATGTTTGTGTCGAATGAAAACGATAACCATTTGACTCCAGGCACGGTGAGAGAGATACATGCGATGTCCACTAAAAAGTGGCTCCAGAATCCGACGGGCTTCTTCGTGGAACGTTCTGAAATATATATGATCTGTCATAGATTCCGTTCCATGAAACTCACGGAGCTGTGGATGGGATTTCTTGAAGAGAAATGAACACCAAGTCGCTCTCCATTTCTTCACCTCGATCCACAATTTTCTGTGCAAGATGGTTGAGCACTTTGGCACCCTTCTCGTTGATATTCCACGTCACCGCACACACCTTCAGTTTTCGATCTCCCATGGTTTCAACGACATCGTAGCTGACAATCGGAACATTTCCGAATCCCTTTACAGCTGCTCTGGAAAGAGGTGTAATGCCAAAAGTGCTCTAATAGAAGCCGACGCTGTATGTGAATTTTGAACACAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTTTTGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTGTCTCTCCTAATAAAGGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAGATATAAAAAATTTGTCAATTGATAAAATACTGGTCATATCATGGTAAACACATTGCTAGTTGACAAATTTTTCATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTGCACGTAAAGGATATGCTTCTATCAAATAATTCAGGTCAGAAAAATATACAATGTAACACTTACGGAGGGGGTTGAGTGTCAATGAGGAATGTCCAATTGCCGTCGCTGATTTCGTTGACTGCAAAAAATGGGGTAGTAGAAGAACTATAGGATTAGGAGGGATTAGATGAGCTT</canonical>
            <polymorphic>AACGGTAGATTTTGTTATTTATTTTGAATAATAGCTCACGAATTGCATAACCGATATGTTTGTGTCGAATGAAAACGATAACCATTTGACTCCAGGCACGGTGAGAGAGATACATGCGATGTCCACTAAAAAGTGGCTCCAGAATCCGACGGGCTTCTTCGTGGAACGTTCTGAAATATATATGATCTGTCATAGATTCCGTTCCATGAAACTCACGGAGCTGTGGATGGGATTTCTTGAAGAGAAATGAACACCAAGTCGCTCTCCATTTCTTCACCTCGATCCACAATTTTCTGTGCAAGATGGTTGAGCACTTTGGCACCCTTCTCGTTGATATTCCACGTCACCGCACACACCTTCAGTTTTCGATCTCCCATGGTTTCAACGACATCGTAGCTGACAATCGGAACATTTCCGAATCCCTTTACAGCTGCTCTGGAAAGAGGTGTAATGCCAAAAGTGCTCTAATAGAAGCCGACGCTGTATGTGAATTTTGAACWCAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTTTTGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTGTCTCTCCTAATAAAGGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAGATATAAAAAATTTGTCAATTGATAAAATACTGGTCATATCATGGTAAACACATTGCTAGTTGACAAATTTTTCATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTGCACGTAAAGGATATGCTTCTATCAAATAATTCAGGTCAGAAAAATATACAATGTAACACTTACGGAGGGGGTTGAGTGTCAATGAGGAATGTCCAATTGCCGTCGCTGATTTCGTTGACTGCAAAAAATGGGGTAGTAGAAGAACTATAGGATTAGGAGGGATTAGATGAGCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>96 95 93 83 62 56 53 52 38 34 31 28 28 27 26 23 22 20 20 15 14 12 11 10 10 10 8 5 5 5 2 2 2 2</canonical_bands>
                <polymorphic_bands>96 95 93 83 64 62 56 52 38 34 31 28 28 27 26 23 22 20 20 15 14 12 10 10 10 8 5 5 5 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCTCTGGAAAGAGGTGTAA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCTGACCTGAATTATTTG</pcr_primer_p2>
		<pcr_amplicon_size>440</pcr_amplicon_size>
		<canonical_amplicon>TGCTCTGGAAAGAGGTGTAATGCCAAAAGTGCTCTAATAGAAGCCGACGCTGTATGTGAATTTTGAACACAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTTTTGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTGTCTCTCCTAATAAAGGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAGATATAAAAAATTTGTCAATTGATAAAATACTGGTCATATCATGGTAAACACATTGCTAGTTGACAAATTTTTCATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTGCACGTAAAGGATATGCTTCTATCAAATAATTCAGGTCAGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TGCTCTGGAAAGAGGTGTAATGCCAAAAGTGCTCTAATAGAAGCCGACGCTGTATGTGAATTTTGAACWCAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTTTTGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTGTCTCTCCTAATAAAGGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAGATATAAAAAATTTGTCAATTGATAAAATACTGGTCATATCATGGTAAACACATTGCTAGTTGACAAATTTTTCATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTGCACGTAAAGGATATGCTTCTATCAAATAATTCAGGTCAGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25882</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>91769</contig_pos>
        <strand></strand>
        <context>taaaacactt[T/C]tgatatcatg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTT</left_flank>
        <right_flank>TGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTGTGTCGAATGAAAACGATAACCATTTGACTCCAGGCACGGTGAGAGAGATACATGCGATGTCCACTAAAAAGTGGCTCCAGAATCCGACGGGCTTCTTCGTGGAACGTTCTGAAATATATATGATCTGTCATAGATTCCGTTCCATGAAACTCACGGAGCTGTGGATGGGATTTCTTGAAGAGAAATGAACACCAAGTCGCTCTCCATTTCTTCACCTCGATCCACAATTTTCTGTGCAAGATGGTTGAGCACTTTGGCACCCTTCTCGTTGATATTCCACGTCACCGCACACACCTTCAGTTTTCGATCTCCCATGGTTTCAACGACATCGTAGCTGACAATCGGAACATTTCCGAATCCCTTTACAGCTGCTCTGGAAAGAGGTGTAATGCCAAAAGTGCTCTAATAGAAGCCGACGCTGTATGTGAATTTTGAACACAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTTTTGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTGTCTCTCCTAATAAAGGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAGATATAAAAAATTTGTCAATTGATAAAATACTGGTCATATCATGGTAAACACATTGCTAGTTGACAAATTTTTCATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTGCACGTAAAGGATATGCTTCTATCAAATAATTCAGGTCAGAAAAATATACAATGTAACACTTACGGAGGGGGTTGAGTGTCAATGAGGAATGTCCAATTGCCGTCGCTGATTTCGTTGACTGCAAAAAATGGGGTAGTAGAAGAACTATAGGATTAGGAGGGATTAGATGAGCTTACATGAGCCATTACGTAACTCGGCAGGTTGAGAAGAGGAGCGGTTCCATGCTGGATG</canonical>
            <polymorphic>GTTTGTGTCGAATGAAAACGATAACCATTTGACTCCAGGCACGGTGAGAGAGATACATGCGATGTCCACTAAAAAGTGGCTCCAGAATCCGACGGGCTTCTTCGTGGAACGTTCTGAAATATATATGATCTGTCATAGATTCCGTTCCATGAAACTCACGGAGCTGTGGATGGGATTTCTTGAAGAGAAATGAACACCAAGTCGCTCTCCATTTCTTCACCTCGATCCACAATTTTCTGTGCAAGATGGTTGAGCACTTTGGCACCCTTCTCGTTGATATTCCACGTCACCGCACACACCTTCAGTTTTCGATCTCCCATGGTTTCAACGACATCGTAGCTGACAATCGGAACATTTCCGAATCCCTTTACAGCTGCTCTGGAAAGAGGTGTAATGCCAAAAGTGCTCTAATAGAAGCCGACGCTGTATGTGAATTTTGAACACAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTTYTGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTGTCTCTCCTAATAAAGGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAGATATAAAAAATTTGTCAATTGATAAAATACTGGTCATATCATGGTAAACACATTGCTAGTTGACAAATTTTTCATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTGCACGTAAAGGATATGCTTCTATCAAATAATTCAGGTCAGAAAAATATACAATGTAACACTTACGGAGGGGGTTGAGTGTCAATGAGGAATGTCCAATTGCCGTCGCTGATTTCGTTGACTGCAAAAAATGGGGTAGTAGAAGAACTATAGGATTAGGAGGGATTAGATGAGCTTACATGAGCCATTACGTAACTCGGCAGGTTGAGAAGAGGAGCGGTTCCATGCTGGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTCTGGAAAGAGGTGTAA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCTGACCTGAATTATTTG</pcr_primer_p2>
		<pcr_amplicon_size>440</pcr_amplicon_size>
		<canonical_amplicon>TGCTCTGGAAAGAGGTGTAATGCCAAAAGTGCTCTAATAGAAGCCGACGCTGTATGTGAATTTTGAACACAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTTTTGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTGTCTCTCCTAATAAAGGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAGATATAAAAAATTTGTCAATTGATAAAATACTGGTCATATCATGGTAAACACATTGCTAGTTGACAAATTTTTCATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTGCACGTAAAGGATATGCTTCTATCAAATAATTCAGGTCAGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TGCTCTGGAAAGAGGTGTAATGCCAAAAGTGCTCTAATAGAAGCCGACGCTGTATGTGAATTTTGAACACAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTTYTGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTGTCTCTCCTAATAAAGGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAGATATAAAAAATTTGTCAATTGATAAAATACTGGTCATATCATGGTAAACACATTGCTAGTTGACAAATTTTTCATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTGCACGTAAAGGATATGCTTCTATCAAATAATTCAGGTCAGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25883</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>91861</contig_pos>
        <strand></strand>
        <context>aagttctgtg[T/G]ctctcctaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTG</left_flank>
        <right_flank>CTCTCCTAATAAAGGCCAACCCTATACGTGCACTTTGAGCTCAATTATCT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGGCTTCTTCGTGGAACGTTCTGAAATATATATGATCTGTCATAGATTCCGTTCCATGAAACTCACGGAGCTGTGGATGGGATTTCTTGAAGAGAAATGAACACCAAGTCGCTCTCCATTTCTTCACCTCGATCCACAATTTTCTGTGCAAGATGGTTGAGCACTTTGGCACCCTTCTCGTTGATATTCCACGTCACCGCACACACCTTCAGTTTTCGATCTCCCATGGTTTCAACGACATCGTAGCTGACAATCGGAACATTTCCGAATCCCTTTACAGCTGCTCTGGAAAGAGGTGTAATGCCAAAAGTGCTCTAATAGAAGCCGACGCTGTATGTGAATTTTGAACACAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTTTTGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTGTCTCTCCTAATAAAGGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAGATATAAAAAATTTGTCAATTGATAAAATACTGGTCATATCATGGTAAACACATTGCTAGTTGACAAATTTTTCATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTGCACGTAAAGGATATGCTTCTATCAAATAATTCAGGTCAGAAAAATATACAATGTAACACTTACGGAGGGGGTTGAGTGTCAATGAGGAATGTCCAATTGCCGTCGCTGATTTCGTTGACTGCAAAAAATGGGGTAGTAGAAGAACTATAGGATTAGGAGGGATTAGATGAGCTTACATGAGCCATTACGTAACTCGGCAGGTTGAGAAGAGGAGCGGTTCCATGCTGGATGACGGGTTGTTTGCTTTTGTGACGAAGTCTCCTGTGTGGATTCAGTGGAAGCCTGTGGACGGACTGGAGTATTGGACGATGAGTTAGATGATG</canonical>
            <polymorphic>CGGGCTTCTTCGTGGAACGTTCTGAAATATATATGATCTGTCATAGATTCCGTTCCATGAAACTCACGGAGCTGTGGATGGGATTTCTTGAAGAGAAATGAACACCAAGTCGCTCTCCATTTCTTCACCTCGATCCACAATTTTCTGTGCAAGATGGTTGAGCACTTTGGCACCCTTCTCGTTGATATTCCACGTCACCGCACACACCTTCAGTTTTCGATCTCCCATGGTTTCAACGACATCGTAGCTGACAATCGGAACATTTCCGAATCCCTTTACAGCTGCTCTGGAAAGAGGTGTAATGCCAAAAGTGCTCTAATAGAAGCCGACGCTGTATGTGAATTTTGAACACAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTTTTGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTGKCTCTCCTAATAAAGGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAGATATAAAAAATTTGTCAATTGATAAAATACTGGTCATATCATGGTAAACACATTGCTAGTTGACAAATTTTTCATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTGCACGTAAAGGATATGCTTCTATCAAATAATTCAGGTCAGAAAAATATACAATGTAACACTTACGGAGGGGGTTGAGTGTCAATGAGGAATGTCCAATTGCCGTCGCTGATTTCGTTGACTGCAAAAAATGGGGTAGTAGAAGAACTATAGGATTAGGAGGGATTAGATGAGCTTACATGAGCCATTACGTAACTCGGCAGGTTGAGAAGAGGAGCGGTTCCATGCTGGATGACGGGTTGTTTGCTTTTGTGACGAAGTCTCCTGTGTGGATTCAGTGGAAGCCTGTGGACGGACTGGAGTATTGGACGATGAGTTAGATGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTCTGGAAAGAGGTGTAA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCTGACCTGAATTATTTG</pcr_primer_p2>
		<pcr_amplicon_size>440</pcr_amplicon_size>
		<canonical_amplicon>TGCTCTGGAAAGAGGTGTAATGCCAAAAGTGCTCTAATAGAAGCCGACGCTGTATGTGAATTTTGAACACAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTTTTGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTGTCTCTCCTAATAAAGGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAGATATAAAAAATTTGTCAATTGATAAAATACTGGTCATATCATGGTAAACACATTGCTAGTTGACAAATTTTTCATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTGCACGTAAAGGATATGCTTCTATCAAATAATTCAGGTCAGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TGCTCTGGAAAGAGGTGTAATGCCAAAAGTGCTCTAATAGAAGCCGACGCTGTATGTGAATTTTGAACACAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTTTTGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTGKCTCTCCTAATAAAGGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAGATATAAAAAATTTGTCAATTGATAAAATACTGGTCATATCATGGTAAACACATTGCTAGTTGACAAATTTTTCATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTGCACGTAAAGGATATGCTTCTATCAAATAATTCAGGTCAGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25884</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>91879</contig_pos>
        <strand>+</strand>
        <context>aataaaggCC[A/C]ACCCTATACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGATAAATTGACTTAAAGTTTAAAGTTCTGTGTCTCTCCTAATAAAGGCC</left_flank>
        <right_flank>ACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAGATA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCTGAAATATATATGATCTGTCATAGATTCCGTTCCATGAAACTCACGGAGCTGTGGATGGGATTTCTTGAAGAGAAATGAACACCAAGTCGCTCTCCATTTCTTCACCTCGATCCACAATTTTCTGTGCAAGATGGTTGAGCACTTTGGCACCCTTCTCGTTGATATTCCACGTCACCGCACACACCTTCAGTTTTCGATCTCCCATGGTTTCAACGACATCGTAGCTGACAATCGGAACATTTCCGAATCCCTTTACAGCTGCTCTGGAAAGAGGTGTAATGCCAAAAGTGCTCTAATAGAAGCCGACGCTGTATGTGAATTTTGAACACAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTTTTGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTGTCTCTCCTAATAAAGGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAGATATAAAAAATTTGTCAATTGATAAAATACTGGTCATATCATGGTAAACACATTGCTAGTTGACAAATTTTTCATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTGCACGTAAAGGATATGCTTCTATCAAATAATTCAGGTCAGAAAAATATACAATGTAACACTTACGGAGGGGGTTGAGTGTCAATGAGGAATGTCCAATTGCCGTCGCTGATTTCGTTGACTGCAAAAAATGGGGTAGTAGAAGAACTATAGGATTAGGAGGGATTAGATGAGCTTACATGAGCCATTACGTAACTCGGCAGGTTGAGAAGAGGAGCGGTTCCATGCTGGATGACGGGTTGTTTGCTTTTGTGACGAAGTCTCCTGTGTGGATTCAGTGGAAGCCTGTGGACGGACTGGAGTATTGGACGATGAGTTAGATGATGTGGAAGAGACCGATGGCG</canonical>
            <polymorphic>GTTCTGAAATATATATGATCTGTCATAGATTCCGTTCCATGAAACTCACGGAGCTGTGGATGGGATTTCTTGAAGAGAAATGAACACCAAGTCGCTCTCCATTTCTTCACCTCGATCCACAATTTTCTGTGCAAGATGGTTGAGCACTTTGGCACCCTTCTCGTTGATATTCCACGTCACCGCACACACCTTCAGTTTTCGATCTCCCATGGTTTCAACGACATCGTAGCTGACAATCGGAACATTTCCGAATCCCTTTACAGCTGCTCTGGAAAGAGGTGTAATGCCAAAAGTGCTCTAATAGAAGCCGACGCTGTATGTGAATTTTGAACACAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTTTTGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTGTCTCTCCTAATAAAGGCCMACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAGATATAAAAAATTTGTCAATTGATAAAATACTGGTCATATCATGGTAAACACATTGCTAGTTGACAAATTTTTCATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTGCACGTAAAGGATATGCTTCTATCAAATAATTCAGGTCAGAAAAATATACAATGTAACACTTACGGAGGGGGTTGAGTGTCAATGAGGAATGTCCAATTGCCGTCGCTGATTTCGTTGACTGCAAAAAATGGGGTAGTAGAAGAACTATAGGATTAGGAGGGATTAGATGAGCTTACATGAGCCATTACGTAACTCGGCAGGTTGAGAAGAGGAGCGGTTCCATGCTGGATGACGGGTTGTTTGCTTTTGTGACGAAGTCTCCTGTGTGGATTCAGTGGAAGCCTGTGGACGGACTGGAGTATTGGACGATGAGTTAGATGATGTGGAAGAGACCGATGGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCTCTGGAAAGAGGTGTAA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCTGACCTGAATTATTTG</pcr_primer_p2>
		<pcr_amplicon_size>440</pcr_amplicon_size>
		<canonical_amplicon>TGCTCTGGAAAGAGGTGTAATGCCAAAAGTGCTCTAATAGAAGCCGACGCTGTATGTGAATTTTGAACACAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTTTTGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTGTCTCTCCTAATAAAGGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAGATATAAAAAATTTGTCAATTGATAAAATACTGGTCATATCATGGTAAACACATTGCTAGTTGACAAATTTTTCATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTGCACGTAAAGGATATGCTTCTATCAAATAATTCAGGTCAGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TGCTCTGGAAAGAGGTGTAATGCCAAAAGTGCTCTAATAGAAGCCGACGCTGTATGTGAATTTTGAACACAATTATCTGGGTCCTTTCAAGAGATATCATAAAGTTGTCAACTGATAAAACACTTTTGATATCATGATGAACAATTTATCAGTTGACATCTTTTTGATATCTTCGACAGTAATTGAGATAAATTGACTTAAAGTTTAAAGTTCTGTGTCTCTCCTAATAAAGGCCMACCCTATACGTGCACTTTGAGCTCAATTATCTAGGTTCCTACAAAAGATATAAAAAATTTGTCAATTGATAAAATACTGGTCATATCATGGTAAACACATTGCTAGTTGACAAATTTTTCATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTGCACGTAAAGGATATGCTTCTATCAAATAATTCAGGTCAGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25885</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>106285</contig_pos>
        <strand></strand>
        <context>TACTTCCCAT[A/G]tcagttagtg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCCACCAATATCTAAGAAAAAGCGAGGGGACACTTCGGGTACTTCCCAT</left_flank>
        <right_flank>TCAGTTAGTGCAGTTTGTACAGTGCAGTTCGTTTATTCGGTTGTTGCAGT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATCAAAAAATGCCGATTTTCGAAAAAACACCTTCGGGAGACTATGTTTATTCAATTCCTTTCATGTCATAATGCACAACTGTGATTTCAAATATATAGCTCACCGTTCATTCAAGAGAGATTTTTGAATATAATAATATTTTTTAACTCAATTCTTTTTTTTTAATCAATTTTTTTTAACTCAAAGAAACTAAACCAACTGAATCTTTCATTCTCAGAGCTTATGTGGAAGTTAAGGTGTAGTTATGTTTTTTGTAGCCTGTAATCTGTTCTACAAGAAACATGTTAGTTTATAATTTTATCTTTGCTCTGAACAAAGTTATGATTTTTTGGATGAACTTGATCCACTATTTCTAAAAAAACAAGAAGTTTTGCCATTCTGCTCAACCTGCCTATTGGCACCTTATATCATCTGTTTTGTGCTAGTCCGAGGAAGGGACATTTTTTTGCCACCAATATCTAAGAAAAAGCGAGGGGACACTTCGGGTACTTCCCATATCAGTTAGTGCAGTTTGTACAGTGCAGTTCGTTTATTCGGTTGTTGCAGTGTTTCTTTCTGTTCATAAAATTTTCTGGAGATTTCAGTTTTTGGTATTTTCCTGAGATGGAGGTTGAAAAATAGAAGCCCATGGGTTTCAATTAGAGAAAATACGGTATGTTGAAATGCCGATTCACCGAGCTTTTGAAAATCGAAAAATTTCGATATTCCGAAAATCCGAAATTTTCGAAATCGGAAAATTCTGAGGTTCCGAAATTCCGAAATTTTTAAAATCGGAATTTTCGACATTCCGAAAAACTTCGAAAAAGTCATTCCGAACATCCGAACATAGAAACATATGTTTCAGCCAAAAATGTGAAGAAATTGAATTTTAAAAAACTTGTGACACAAAAGTATCACCAGAAGAAAGGAAATATATTCTTCTTCAAAGGTATTCAGGGTATTTTTTGGGATTTTTCATCCTTCTGAAAATTTATTTTTGGAATTCTGTGTTTTGCTT</canonical>
            <polymorphic>GAAATCAAAAAATGCCGATTTTCGAAAAAACACCTTCGGGAGACTATGTTTATTCAATTCCTTTCATGTCATAATGCACAACTGTGATTTCAAATATATAGCTCACCGTTCATTCAAGAGAGATTTTTGAATATAATAATATTTTTTAACTCAATTCTTTTTTTTTAATCAATTTTTTTTAACTCAAAGAAACTAAACCAACTGAATCTTTCATTCTCAGAGCTTATGTGGAAGTTAAGGTGTAGTTATGTTTTTTGTAGCCTGTAATCTGTTCTACAAGAAACATGTTAGTTTATAATTTTATCTTTGCTCTGAACAAAGTTATGATTTTTTGGATGAACTTGATCCACTATTTCTAAAAAAACAAGAAGTTTTGCCATTCTGCTCAACCTGCCTATTGGCACCTTATATCATCTGTTTTGTGCTAGTCCGAGGAAGGGACATTTTTTTGCCACCAATATCTAAGAAAAAGCGAGGGGACACTTCGGGTACTTCCCATRTCAGTTAGTGCAGTTTGTACAGTGCAGTTCGTTTATTCGGTTGTTGCAGTGTTTCTTTCTGTTCATAAAATTTTCTGGAGATTTCAGTTTTTGGTATTTTCCTGAGATGGAGGTTGAAAAATAGAAGCCCATGGGTTTCAATTAGAGAAAATACGGTATGTTGAAATGCCGATTCACCGAGCTTTTGAAAATCGAAAAATTTCGATATTCCGAAAATCCGAAATTTTCGAAATCGGAAAATTCTGAGGTTCCGAAATTCCGAAATTTTTAAAATCGGAATTTTCGACATTCCGAAAAACTTCGAAAAAGTCATTCCGAACATCCGAACATAGAAACATATGTTTCAGCCAAAAATGTGAAGAAATTGAATTTTAAAAAACTTGTGACACAAAAGTATCACCAGAAGAAAGGAAATATATTCTTCTTCAAAGGTATTCAGGGTATTTTTTGGGATTTTTCATCCTTCTGAAAATTTATTTTTGGAATTCTGTGTTTTGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCCACCAATATCTAAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACAATAAAAGCAAAACACAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>558</pcr_amplicon_size>
		<canonical_amplicon>TGCCACCAATATCTAAGAAAAAGCGAGGGGACACTTCGGGTACTTCCCATATCAGTTAGTGCAGTTTGTACAG</canonical_amplicon>
		<polymorphic_amplicon>TGCCACCAATATCTAAGAAAAAGCGAGGGGACACTTCGGGTACTTCCCATRTCAGTTAGTGCAGTTTGTACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25886</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>122988</contig_pos>
        <strand></strand>
        <context>caactttaag[C/T]tcatawaact</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAACACTACATATTACATAGGATGCCCCCTCGCAACGGCCAACTTTAAG</left_flank>
        <right_flank>TCATATAACTCATTTCCGGTCAGAGATATCAGAAAGTAATCAACTGATAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAAAGAACAGTTATTATTATTCATTTCTCTTTGTCTTCACACCTTTCATTCATTTATTCACACTCCTCGTGTTCGTTTTCTTTCTTGTTTTGCCTCACCTTTCCTCACTTTTTCTCCCCTTTCCCGTCTCTCGGAATGACATCAGAATCGAGACTTCCTCTCCGGCTCTCATGATGCTCCGCGCAGCACCGGTTCCTTCTCTTGATATGATATAAAACCAACAGAAAAAATTATTGTACTTGAAAGTCATTTCATTTGCAGAGACAGAGAGATGGCGGGTTACTACCTTTTTCTACAGCTAGGATGTGCATTTGGATTGTTGGCTGTGACGGCTTTTTTTGGATTTATACCTCTATGGGTGAGTGAAATTAGAAAAATTTTGGAATACTGCTTAAAATGTACCGCAAGAAATAGGATTCCAAGGCCTAGAATCTGAAAGAAATATCGTAAACACTACATATTACATAGGATGCCCCCTCGCAACGGCCAACTTTAAGCTCATATAACTCATTTCCGGTCAGAGATATCAGAAAGTAATCAACTGATAAAATGTTAATCATAATGTCACAAACATTTTATTTGTTGACTTATTTTGGATACCTCTGACAAGGAGTCGTAAATTCTGAAAAAAGAATCTGGAGTTTTTCCTCTGTTTTTAACAAGTACATCCTTCAAAAACCTAGGTAAATATGTCCAGAGCACAAAAATTCAAGTCCATTCGATAATTTCCAACTTTATTTCAGCTTCTCGAATTCCTGCGGAAGAAGGGAAAGGACCAATCGGAAAGCGGATGGCTGTCATACCTCTCGTGTTTCTCAGGAGGAGTATTTATGGCGACCTGCTTCCTAGATGTCATCCCTCATGTTAGGTAAGTCTTGTAGTCCTTTATTCTTTAAAAGATTCAATTCCAATTTTCAGCGAGAATTATCAAAAAATGATTGAAGATTACGGTGTGGAATATCCAGTTCCACTGTTTCAAGTGTTCATCTGTTGCGGCT</canonical>
            <polymorphic>AACAAAGAACAGTTATTATTATTCATTTCTCTTTGTCTTCACACCTTTCATTCATTTATTCACACTCCTCGTGTTCGTTTTCTTTCTTGTTTTGCCTCACCTTTCCTCACTTTTTCTCCCCTTTCCCGTCTCTCGGAATGACATCAGAATCGAGACTTCCTCTCCGGCTCTCATGATGCTCCGCGCAGCACCGGTTCCTTCTCTTGATATGATATAAAACCAACAGAAAAAATTATTGTACTTGAAAGTCATTTCATTTGCAGAGACAGAGAGATGGCGGGTTACTACCTTTTTCTACAGCTAGGATGTGCATTTGGATTGTTGGCTGTGACGGCTTTTTTTGGATTTATACCTCTATGGGTGAGTGAAATTAGAAAAATTTTGGAATACTGCTTAAAATGTACCGCAAGAAATAGGATTCCAAGGCCTAGAATCTGAAAGAAATATCGTAAACACTACATATTACATAGGATGCCCCCTCGCAACGGCCAACTTTAAGYTCATATAACTCATTTCCGGTCAGAGATATCAGAAAGTAATCAACTGATAAAATGTTAATCATAATGTCACAAACATTTTATTTGTTGACTTATTTTGGATACCTCTGACAAGGAGTCGTAAATTCTGAAAAAAGAATCTGGAGTTTTTCCTCTGTTTTTAACAAGTACATCCTTCAAAAACCTAGGTAAATATGTCCAGAGCACAAAAATTCAAGTCCATTCGATAATTTCCAACTTTATTTCAGCTTCTCGAATTCCTGCGGAAGAAGGGAAAGGACCAATCGGAAAGCGGATGGCTGTCATACCTCTCGTGTTTCTCAGGAGGAGTATTTATGGCGACCTGCTTCCTAGATGTCATCCCTCATGTTAGGTAAGTCTTGTAGTCCTTTATTCTTTAAAAGATTCAATTCCAATTTTCAGCGAGAATTATCAAAAAATGATTGAAGATTACGGTGTGGAATATCCAGTTCCACTGTTTCAAGTGTTCATCTGTTGCGGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>300 255 246 199</canonical_bands>
                <polymorphic_bands>445 300 255</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>246 202 167 133 92 62 51 25 11 9 2</canonical_bands>
                <polymorphic_bands>257 202 167 133 92 62 51 25 9 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGCCTAGAATCTGAAAGAAATA</pcr_primer_p1>
		<pcr_primer_p2>GGATGTACTTGTTAAAAACAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGGCCTAGAATCTGAAAGAAATATCGTAAACACTACATATTACATAGGATGCCCCCTCGCAACGGCCAACTTTAAGCTCATATAACTCATTTCCGGTCAGAGATATCAGAAAGTAATCAACTGATAAAATGTTAATCATAATGTCACAAACATTTTATTTGTTGACTTATTTTGGATACCTCTGACAAGGAGTCGTAAATTCTGAAAAAAGAATCTGGAGTTTTTCCTCTGTTTTTAACAAGTACATCC</canonical_amplicon>
		<polymorphic_amplicon>AGGCCTAGAATCTGAAAGAAATATCGTAAACACTACATATTACATAGGATGCCCCCTCGCAACGGCCAACTTTAAGYTCATATAACTCATTTCCGGTCAGAGATATCAGAAAGTAATCAACTGATAAAATGTTAATCATAATGTCACAAACATTTTATTTGTTGACTTATTTTGGATACCTCTGACAAGGAGTCGTAAATTCTGAAAAAAGAATCTGGAGTTTTTCCTCTGTTTTTAACAAGTACATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25887</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>122994</contig_pos>
        <strand></strand>
        <context>taagytcata[T/A]aactcatttc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CTACATATTACATAGGATGCCCCCTCGCAACGGCCAACTTTAAGCTCATA</left_flank>
        <right_flank>AACTCATTTCCGGTCAGAGATATCAGAAAGTAATCAACTGATAAAATGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACAGTTATTATTATTCATTTCTCTTTGTCTTCACACCTTTCATTCATTTATTCACACTCCTCGTGTTCGTTTTCTTTCTTGTTTTGCCTCACCTTTCCTCACTTTTTCTCCCCTTTCCCGTCTCTCGGAATGACATCAGAATCGAGACTTCCTCTCCGGCTCTCATGATGCTCCGCGCAGCACCGGTTCCTTCTCTTGATATGATATAAAACCAACAGAAAAAATTATTGTACTTGAAAGTCATTTCATTTGCAGAGACAGAGAGATGGCGGGTTACTACCTTTTTCTACAGCTAGGATGTGCATTTGGATTGTTGGCTGTGACGGCTTTTTTTGGATTTATACCTCTATGGGTGAGTGAAATTAGAAAAATTTTGGAATACTGCTTAAAATGTACCGCAAGAAATAGGATTCCAAGGCCTAGAATCTGAAAGAAATATCGTAAACACTACATATTACATAGGATGCCCCCTCGCAACGGCCAACTTTAAGCTCATATAACTCATTTCCGGTCAGAGATATCAGAAAGTAATCAACTGATAAAATGTTAATCATAATGTCACAAACATTTTATTTGTTGACTTATTTTGGATACCTCTGACAAGGAGTCGTAAATTCTGAAAAAAGAATCTGGAGTTTTTCCTCTGTTTTTAACAAGTACATCCTTCAAAAACCTAGGTAAATATGTCCAGAGCACAAAAATTCAAGTCCATTCGATAATTTCCAACTTTATTTCAGCTTCTCGAATTCCTGCGGAAGAAGGGAAAGGACCAATCGGAAAGCGGATGGCTGTCATACCTCTCGTGTTTCTCAGGAGGAGTATTTATGGCGACCTGCTTCCTAGATGTCATCCCTCATGTTAGGTAAGTCTTGTAGTCCTTTATTCTTTAAAAGATTCAATTCCAATTTTCAGCGAGAATTATCAAAAAATGATTGAAGATTACGGTGTGGAATATCCAGTTCCACTGTTTCAAGTGTTCATCTGTTGCGGCTTCTTTT</canonical>
            <polymorphic>GAACAGTTATTATTATTCATTTCTCTTTGTCTTCACACCTTTCATTCATTTATTCACACTCCTCGTGTTCGTTTTCTTTCTTGTTTTGCCTCACCTTTCCTCACTTTTTCTCCCCTTTCCCGTCTCTCGGAATGACATCAGAATCGAGACTTCCTCTCCGGCTCTCATGATGCTCCGCGCAGCACCGGTTCCTTCTCTTGATATGATATAAAACCAACAGAAAAAATTATTGTACTTGAAAGTCATTTCATTTGCAGAGACAGAGAGATGGCGGGTTACTACCTTTTTCTACAGCTAGGATGTGCATTTGGATTGTTGGCTGTGACGGCTTTTTTTGGATTTATACCTCTATGGGTGAGTGAAATTAGAAAAATTTTGGAATACTGCTTAAAATGTACCGCAAGAAATAGGATTCCAAGGCCTAGAATCTGAAAGAAATATCGTAAACACTACATATTACATAGGATGCCCCCTCGCAACGGCCAACTTTAAGCTCATAWAACTCATTTCCGGTCAGAGATATCAGAAAGTAATCAACTGATAAAATGTTAATCATAATGTCACAAACATTTTATTTGTTGACTTATTTTGGATACCTCTGACAAGGAGTCGTAAATTCTGAAAAAAGAATCTGGAGTTTTTCCTCTGTTTTTAACAAGTACATCCTTCAAAAACCTAGGTAAATATGTCCAGAGCACAAAAATTCAAGTCCATTCGATAATTTCCAACTTTATTTCAGCTTCTCGAATTCCTGCGGAAGAAGGGAAAGGACCAATCGGAAAGCGGATGGCTGTCATACCTCTCGTGTTTCTCAGGAGGAGTATTTATGGCGACCTGCTTCCTAGATGTCATCCCTCATGTTAGGTAAGTCTTGTAGTCCTTTATTCTTTAAAAGATTCAATTCCAATTTTCAGCGAGAATTATCAAAAAATGATTGAAGATTACGGTGTGGAATATCCAGTTCCACTGTTTCAAGTGTTCATCTGTTGCGGCTTCTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGCCTAGAATCTGAAAGAAATA</pcr_primer_p1>
		<pcr_primer_p2>GGATGTACTTGTTAAAAACAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGGCCTAGAATCTGAAAGAAATATCGTAAACACTACATATTACATAGGATGCCCCCTCGCAACGGCCAACTTTAAGCTCATATAACTCATTTCCGGTCAGAGATATCAGAAAGTAATCAACTGATAAAATGTTAATCATAATGTCACAAACATTTTATTTGTTGACTTATTTTGGATACCTCTGACAAGGAGTCGTAAATTCTGAAAAAAGAATCTGGAGTTTTTCCTCTGTTTTTAACAAGTACATCC</canonical_amplicon>
		<polymorphic_amplicon>AGGCCTAGAATCTGAAAGAAATATCGTAAACACTACATATTACATAGGATGCCCCCTCGCAACGGCCAACTTTAAGCTCATAWAACTCATTTCCGGTCAGAGATATCAGAAAGTAATCAACTGATAAAATGTTAATCATAATGTCACAAACATTTTATTTGTTGACTTATTTTGGATACCTCTGACAAGGAGTCGTAAATTCTGAAAAAAGAATCTGGAGTTTTTCCTCTGTTTTTAACAAGTACATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25888</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>123078</contig_pos>
        <strand></strand>
        <context>atttgttgac[T/A]yattttggat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCAACTGATAAAATGTTAATCATAATGTCACAAACATTTTATTTGTTGAC</left_flank>
        <right_flank>TATTTTGGATACCTCTGACAAGGAGTCGTAAATTCTGAAAAAAGAATCTG</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGCCTCACCTTTCCTCACTTTTTCTCCCCTTTCCCGTCTCTCGGAATGACATCAGAATCGAGACTTCCTCTCCGGCTCTCATGATGCTCCGCGCAGCACCGGTTCCTTCTCTTGATATGATATAAAACCAACAGAAAAAATTATTGTACTTGAAAGTCATTTCATTTGCAGAGACAGAGAGATGGCGGGTTACTACCTTTTTCTACAGCTAGGATGTGCATTTGGATTGTTGGCTGTGACGGCTTTTTTTGGATTTATACCTCTATGGGTGAGTGAAATTAGAAAAATTTTGGAATACTGCTTAAAATGTACCGCAAGAAATAGGATTCCAAGGCCTAGAATCTGAAAGAAATATCGTAAACACTACATATTACATAGGATGCCCCCTCGCAACGGCCAACTTTAAGCTCATATAACTCATTTCCGGTCAGAGATATCAGAAAGTAATCAACTGATAAAATGTTAATCATAATGTCACAAACATTTTATTTGTTGACTTATTTTGGATACCTCTGACAAGGAGTCGTAAATTCTGAAAAAAGAATCTGGAGTTTTTCCTCTGTTTTTAACAAGTACATCCTTCAAAAACCTAGGTAAATATGTCCAGAGCACAAAAATTCAAGTCCATTCGATAATTTCCAACTTTATTTCAGCTTCTCGAATTCCTGCGGAAGAAGGGAAAGGACCAATCGGAAAGCGGATGGCTGTCATACCTCTCGTGTTTCTCAGGAGGAGTATTTATGGCGACCTGCTTCCTAGATGTCATCCCTCATGTTAGGTAAGTCTTGTAGTCCTTTATTCTTTAAAAGATTCAATTCCAATTTTCAGCGAGAATTATCAAAAAATGATTGAAGATTACGGTGTGGAATATCCAGTTCCACTGTTTCAAGTGTTCATCTGTTGCGGCTTCTTTTTTGTCTACTTCATTGAAGAAATCACAGGATTGGTGAGCTTTTACTCTGAAAATCTTGATTCTAGATTTTGAATTCCAGATATTT</canonical>
            <polymorphic>TTTGCCTCACCTTTCCTCACTTTTTCTCCCCTTTCCCGTCTCTCGGAATGACATCAGAATCGAGACTTCCTCTCCGGCTCTCATGATGCTCCGCGCAGCACCGGTTCCTTCTCTTGATATGATATAAAACCAACAGAAAAAATTATTGTACTTGAAAGTCATTTCATTTGCAGAGACAGAGAGATGGCGGGTTACTACCTTTTTCTACAGCTAGGATGTGCATTTGGATTGTTGGCTGTGACGGCTTTTTTTGGATTTATACCTCTATGGGTGAGTGAAATTAGAAAAATTTTGGAATACTGCTTAAAATGTACCGCAAGAAATAGGATTCCAAGGCCTAGAATCTGAAAGAAATATCGTAAACACTACATATTACATAGGATGCCCCCTCGCAACGGCCAACTTTAAGCTCATATAACTCATTTCCGGTCAGAGATATCAGAAAGTAATCAACTGATAAAATGTTAATCATAATGTCACAAACATTTTATTTGTTGACWTATTTTGGATACCTCTGACAAGGAGTCGTAAATTCTGAAAAAAGAATCTGGAGTTTTTCCTCTGTTTTTAACAAGTACATCCTTCAAAAACCTAGGTAAATATGTCCAGAGCACAAAAATTCAAGTCCATTCGATAATTTCCAACTTTATTTCAGCTTCTCGAATTCCTGCGGAAGAAGGGAAAGGACCAATCGGAAAGCGGATGGCTGTCATACCTCTCGTGTTTCTCAGGAGGAGTATTTATGGCGACCTGCTTCCTAGATGTCATCCCTCATGTTAGGTAAGTCTTGTAGTCCTTTATTCTTTAAAAGATTCAATTCCAATTTTCAGCGAGAATTATCAAAAAATGATTGAAGATTACGGTGTGGAATATCCAGTTCCACTGTTTCAAGTGTTCATCTGTTGCGGCTTCTTTTTTGTCTACTTCATTGAAGAAATCACAGGATTGGTGAGCTTTTACTCTGAAAATCTTGATTCTAGATTTTGAATTCCAGATATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGCCTAGAATCTGAAAGAAATA</pcr_primer_p1>
		<pcr_primer_p2>GGATGTACTTGTTAAAAACAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGGCCTAGAATCTGAAAGAAATATCGTAAACACTACATATTACATAGGATGCCCCCTCGCAACGGCCAACTTTAAGCTCATATAACTCATTTCCGGTCAGAGATATCAGAAAGTAATCAACTGATAAAATGTTAATCATAATGTCACAAACATTTTATTTGTTGACTTATTTTGGATACCTCTGACAAGGAGTCGTAAATTCTGAAAAAAGAATCTGGAGTTTTTCCTCTGTTTTTAACAAGTACATCC</canonical_amplicon>
		<polymorphic_amplicon>AGGCCTAGAATCTGAAAGAAATATCGTAAACACTACATATTACATAGGATGCCCCCTCGCAACGGCCAACTTTAAGCTCATATAACTCATTTCCGGTCAGAGATATCAGAAAGTAATCAACTGATAAAATGTTAATCATAATGTCACAAACATTTTATTTGTTGACWTATTTTGGATACCTCTGACAAGGAGTCGTAAATTCTGAAAAAAGAATCTGGAGTTTTTCCTCTGTTTTTAACAAGTACATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25889</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>123079</contig_pos>
        <strand></strand>
        <context>tttgttgacw[T/C]attttggata</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAACTGATAAAATGTTAATCATAATGTCACAAACATTTTATTTGTTGACT</left_flank>
        <right_flank>ATTTTGGATACCTCTGACAAGGAGTCGTAAATTCTGAAAAAAGAATCTGG</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCCTCACCTTTCCTCACTTTTTCTCCCCTTTCCCGTCTCTCGGAATGACATCAGAATCGAGACTTCCTCTCCGGCTCTCATGATGCTCCGCGCAGCACCGGTTCCTTCTCTTGATATGATATAAAACCAACAGAAAAAATTATTGTACTTGAAAGTCATTTCATTTGCAGAGACAGAGAGATGGCGGGTTACTACCTTTTTCTACAGCTAGGATGTGCATTTGGATTGTTGGCTGTGACGGCTTTTTTTGGATTTATACCTCTATGGGTGAGTGAAATTAGAAAAATTTTGGAATACTGCTTAAAATGTACCGCAAGAAATAGGATTCCAAGGCCTAGAATCTGAAAGAAATATCGTAAACACTACATATTACATAGGATGCCCCCTCGCAACGGCCAACTTTAAGCTCATATAACTCATTTCCGGTCAGAGATATCAGAAAGTAATCAACTGATAAAATGTTAATCATAATGTCACAAACATTTTATTTGTTGACTTATTTTGGATACCTCTGACAAGGAGTCGTAAATTCTGAAAAAAGAATCTGGAGTTTTTCCTCTGTTTTTAACAAGTACATCCTTCAAAAACCTAGGTAAATATGTCCAGAGCACAAAAATTCAAGTCCATTCGATAATTTCCAACTTTATTTCAGCTTCTCGAATTCCTGCGGAAGAAGGGAAAGGACCAATCGGAAAGCGGATGGCTGTCATACCTCTCGTGTTTCTCAGGAGGAGTATTTATGGCGACCTGCTTCCTAGATGTCATCCCTCATGTTAGGTAAGTCTTGTAGTCCTTTATTCTTTAAAAGATTCAATTCCAATTTTCAGCGAGAATTATCAAAAAATGATTGAAGATTACGGTGTGGAATATCCAGTTCCACTGTTTCAAGTGTTCATCTGTTGCGGCTTCTTTTTTGTCTACTTCATTGAAGAAATCACAGGATTGGTGAGCTTTTACTCTGAAAATCTTGATTCTAGATTTTGAATTCCAGATATTTG</canonical>
            <polymorphic>TTGCCTCACCTTTCCTCACTTTTTCTCCCCTTTCCCGTCTCTCGGAATGACATCAGAATCGAGACTTCCTCTCCGGCTCTCATGATGCTCCGCGCAGCACCGGTTCCTTCTCTTGATATGATATAAAACCAACAGAAAAAATTATTGTACTTGAAAGTCATTTCATTTGCAGAGACAGAGAGATGGCGGGTTACTACCTTTTTCTACAGCTAGGATGTGCATTTGGATTGTTGGCTGTGACGGCTTTTTTTGGATTTATACCTCTATGGGTGAGTGAAATTAGAAAAATTTTGGAATACTGCTTAAAATGTACCGCAAGAAATAGGATTCCAAGGCCTAGAATCTGAAAGAAATATCGTAAACACTACATATTACATAGGATGCCCCCTCGCAACGGCCAACTTTAAGCTCATATAACTCATTTCCGGTCAGAGATATCAGAAAGTAATCAACTGATAAAATGTTAATCATAATGTCACAAACATTTTATTTGTTGACTYATTTTGGATACCTCTGACAAGGAGTCGTAAATTCTGAAAAAAGAATCTGGAGTTTTTCCTCTGTTTTTAACAAGTACATCCTTCAAAAACCTAGGTAAATATGTCCAGAGCACAAAAATTCAAGTCCATTCGATAATTTCCAACTTTATTTCAGCTTCTCGAATTCCTGCGGAAGAAGGGAAAGGACCAATCGGAAAGCGGATGGCTGTCATACCTCTCGTGTTTCTCAGGAGGAGTATTTATGGCGACCTGCTTCCTAGATGTCATCCCTCATGTTAGGTAAGTCTTGTAGTCCTTTATTCTTTAAAAGATTCAATTCCAATTTTCAGCGAGAATTATCAAAAAATGATTGAAGATTACGGTGTGGAATATCCAGTTCCACTGTTTCAAGTGTTCATCTGTTGCGGCTTCTTTTTTGTCTACTTCATTGAAGAAATCACAGGATTGGTGAGCTTTTACTCTGAAAATCTTGATTCTAGATTTTGAATTCCAGATATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGCCTAGAATCTGAAAGAAATA</pcr_primer_p1>
		<pcr_primer_p2>GGATGTACTTGTTAAAAACAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGGCCTAGAATCTGAAAGAAATATCGTAAACACTACATATTACATAGGATGCCCCCTCGCAACGGCCAACTTTAAGCTCATATAACTCATTTCCGGTCAGAGATATCAGAAAGTAATCAACTGATAAAATGTTAATCATAATGTCACAAACATTTTATTTGTTGACTTATTTTGGATACCTCTGACAAGGAGTCGTAAATTCTGAAAAAAGAATCTGGAGTTTTTCCTCTGTTTTTAACAAGTACATCC</canonical_amplicon>
		<polymorphic_amplicon>AGGCCTAGAATCTGAAAGAAATATCGTAAACACTACATATTACATAGGATGCCCCCTCGCAACGGCCAACTTTAAGCTCATATAACTCATTTCCGGTCAGAGATATCAGAAAGTAATCAACTGATAAAATGTTAATCATAATGTCACAAACATTTTATTTGTTGACTYATTTTGGATACCTCTGACAAGGAGTCGTAAATTCTGAAAAAAGAATCTGGAGTTTTTCCTCTGTTTTTAACAAGTACATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25890</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>126224</contig_pos>
        <strand>+</strand>
        <context>TTTCTTGAGG[A/T]TTTTTTTTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTTAAACTCCAAAACTTCTAAACTGAAAACCGAATCCATTTTCTTGAGG</left_flank>
        <right_flank>TTTTTTTTAAATTTCTTTAGGACCAAGTATTCCTCCCTACTTTTTCAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTCTTTGTGCTTTTCATGAGATAAAGCAACTTTGATAAGCGATAACTCACAATCAGCTCAATGTTGGTCAAATTACATAAAACTTGGCACGTTTACTGATGGATTGTTTATGTTTTTGCAGACCAAGTTTGTGCTCAGTACAGCGCTTCACTCAAATAGTATGCTAGTACAAACCATACTTGCAAAATTACGGGCCGGCCCGCGGGCCGGGTCGCGGGTCGGCCCTTGATAACTTTAAAAATTATATAACTGTTTTTTTCTTTTTTAATTCAAAAAAATGTCTTAAATTTTCGTTGGATTTTTTTTTACTGAGAAAGGGCCGGCGGGCCGGGCCGGCAAAATTGTCGCTTTGACCCGGCCCGGCCCGGCCCGTTGCAAGTATGGTACAAACTTGAGTCCGAGTGATTATGCGCCACCCGGTATTATACAGATAATCATATTAATCGAAGTTAAACTCCAAAACTTCTAAACTGAAAACCGAATCCATTTTCTTGAGGTTTTTTTTTAAATTTCTTTAGGACCAAGTATTCCTCCCTACTTTTTCAAACAACAGTATGTTTAAATATTCATTGATGATCTTACCAAAACCAAACAGAAAAGAGTTTACAAGAAATGGTGATGTAGAGAATAGAATGAGAATCAGAAGCATCATATGTTTTGGAGATGTTCCACGAAAATGAGAAATTGAAAAGAAACAAAACGGTTTAAGTATGGAAAAGTGGGGAGGTGGGGGATTAGTTGAACGTCTCGGATCCGGTGTTGTTTCGAATTACTTCTTCTTCTTCTTCTTATTCTCTTTTTGGGATAGTGGTTAGCCCTTCTCCAATTTACTCTTCATTCCGTAGTTTTCTACTTTTTTATTTCATTTCTTCATTTCGGGACATTAATCGTTTTGTGGATTCAGGGAGAGCGAGGGTTTCCTGCCTTTTTTTGGATTCGGAAAGCTGCTAAAGGAGGGACGGAGATGGATAGAGATCAGATGATGAGTGTAGATTTTT</canonical>
            <polymorphic>ATGTCTTTGTGCTTTTCATGAGATAAAGCAACTTTGATAAGCGATAACTCACAATCAGCTCAATGTTGGTCAAATTACATAAAACTTGGCACGTTTACTGATGGATTGTTTATGTTTTTGCAGACCAAGTTTGTGCTCAGTACAGCGCTTCACTCAAATAGTATGCTAGTACAAACCATACTTGCAAAATTACGGGCCGGCCCGCGGGCCGGGTCGCGGGTCGGCCCTTGATAACTTTAAAAATTATATAACTGTTTTTTTCTTTTTTAATTCAAAAAAATGTCTTAAATTTTCGTTGGATTTTTTTTTACTGAGAAAGGGCCGGCGGGCCGGGCCGGCAAAATTGTCGCTTTGACCCGGCCCGGCCCGGCCCGTTGCAAGTATGGTACAAACTTGAGTCCGAGTGATTATGCGCCACCCGGTATTATACAGATAATCATATTAATCGAAGTTAAACTCCAAAACTTCTAAACTGAAAACCGAATCCATTTTCTTGAGGWTTTTTTTTAAATTTCTTTAGGACCAAGTATTCCTCCCTACTTTTTCAAACAACAGTATGTTTAAATATTCATTGATGATCTTACCAAAACCAAACAGAAAAGAGTTTACAAGAAATGGTGATGTAGAGAATAGAATGAGAATCAGAAGCATCATATGTTTTGGAGATGTTCCACGAAAATGAGAAATTGAAAAGAAACAAAACGGTTTAAGTATGGAAAAGTGGGGAGGTGGGGGATTAGTTGAACGTCTCGGATCCGGTGTTGTTTCGAATTACTTCTTCTTCTTCTTCTTATTCTCTTTTTGGGATAGTGGTTAGCCCTTCTCCAATTTACTCTTCATTCCGTAGTTTTCTACTTTTTTATTTCATTTCTTCATTTCGGGACATTAATCGTTTTGTGGATTCAGGGAGAGCGAGGGTTTCCTGCCTTTTTTTGGATTCGGAAAGCTGCTAAAGGAGGGACGGAGATGGATAGAGATCAGATGATGAGTGTAGATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAAGTTAAACTCCAAAACTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTTTCAATTTCTCATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CGAAGTTAAACTCCAAAACTTCTAAACTGAAAACCGAATCCATTTTCTTGAGGTTTTTTTTTAAATTTCTTTAGGACCAAGTATTCCTCCCTACTTTTTCAAACAACAGTATGTTTAAATATTCATTGATGATCTTACCAAAACCAAACAGAAAAGAGTTTACAAGAAATGGTGATGTAGAGAATAGAATGAGAATCAGAAGCATCATATGTTTTGGAGATGTTCCACGAAAATGAGAAATTGAAAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>CGAAGTTAAACTCCAAAACTTCTAAACTGAAAACCGAATCCATTTTCTTGAGGWTTTTTTTTAAATTTCTTTAGGACCAAGTATTCCTCCCTACTTTTTCAAACAACAGTATGTTTAAATATTCATTGATGATCTTACCAAAACCAAACAGAAAAGAGTTTACAAGAAATGGTGATGTAGAGAATAGAATGAGAATCAGAAGCATCATATGTTTTGGAGATGTTCCACGAAAATGAGAAATTGAAAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25891</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>126499</contig_pos>
        <strand>+</strand>
        <context>TTTCGAATTA[A/G]TTCTTCTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAGGTGGGGGATTAGTTGAACGTCTCGGATCCGGTGTTGTTTCGAATTA</left_flank>
        <right_flank>TTCTTCTTCTTCTTCTTATTCTCTTTTTGGGATAGTGGTTAGCCCTTCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATGTCTTAAATTTTCGTTGGATTTTTTTTTACTGAGAAAGGGCCGGCGGGCCGGGCCGGCAAAATTGTCGCTTTGACCCGGCCCGGCCCGGCCCGTTGCAAGTATGGTACAAACTTGAGTCCGAGTGATTATGCGCCACCCGGTATTATACAGATAATCATATTAATCGAAGTTAAACTCCAAAACTTCTAAACTGAAAACCGAATCCATTTTCTTGAGGTTTTTTTTTAAATTTCTTTAGGACCAAGTATTCCTCCCTACTTTTTCAAACAACAGTATGTTTAAATATTCATTGATGATCTTACCAAAACCAAACAGAAAAGAGTTTACAAGAAATGGTGATGTAGAGAATAGAATGAGAATCAGAAGCATCATATGTTTTGGAGATGTTCCACGAAAATGAGAAATTGAAAAGAAACAAAACGGTTTAAGTATGGAAAAGTGGGGAGGTGGGGGATTAGTTGAACGTCTCGGATCCGGTGTTGTTTCGAATTACTTCTTCTTCTTCTTCTTATTCTCTTTTTGGGATAGTGGTTAGCCCTTCTCCAATTTACTCTTCATTCCGTAGTTTTCTACTTTTTTATTTCATTTCTTCATTTCGGGACATTAATCGTTTTGTGGATTCAGGGAGAGCGAGGGTTTCCTGCCTTTTTTTGGATTCGGAAAGCTGCTAAAGGAGGGACGGAGATGGATAGAGATCAGATGATGAGTGTAGATTTTTGAGGGATTCAGAAGAAGTGCAGATTCATACAGAGAACTCTTCATTCGCTTTCACTTCCGCTCGGATTATTTCATTTCGGACTAGATCGTACTCAATGTCGAACGATCTTTTGACCATTGATCTGCAAAAATAACGATGGGTTTAGCAAACGCCAGAAGTCATAAAGGAGTCTGGCGGATTCTGAAGGTGATTCAGAAACAAGGTAAAATGACTTTTTTAAATTTGATAAGAGTTAGTGAACTAAATTCATTAGGGCTACAAAAACCATCAGTGTT</canonical>
            <polymorphic>AAAAATGTCTTAAATTTTCGTTGGATTTTTTTTTACTGAGAAAGGGCCGGCGGGCCGGGCCGGCAAAATTGTCGCTTTGACCCGGCCCGGCCCGGCCCGTTGCAAGTATGGTACAAACTTGAGTCCGAGTGATTATGCGCCACCCGGTATTATACAGATAATCATATTAATCGAAGTTAAACTCCAAAACTTCTAAACTGAAAACCGAATCCATTTTCTTGAGGTTTTTTTTTAAATTTCTTTAGGACCAAGTATTCCTCCCTACTTTTTCAAACAACAGTATGTTTAAATATTCATTGATGATCTTACCAAAACCAAACAGAAAAGAGTTTACAAGAAATGGTGATGTAGAGAATAGAATGAGAATCAGAAGCATCATATGTTTTGGAGATGTTCCACGAAAATGAGAAATTGAAAAGAAACAAAACGGTTTAAGTATGGAAAAGTGGGGAGGTGGGGGATTAGTTGAACGTCTCGGATCCGGTGTTGTTTCGAATTARTTCTTCTTCTTCTTCTTATTCTCTTTTTGGGATAGTGGTTAGCCCTTCTCCAATTTACTCTTCATTCCGTAGTTTTCTACTTTTTTATTTCATTTCTTCATTTCGGGACATTAATCGTTTTGTGGATTCAGGGAGAGCGAGGGTTTCCTGCCTTTTTTTGGATTCGGAAAGCTGCTAAAGGAGGGACGGAGATGGATAGAGATCAGATGATGAGTGTAGATTTTTGAGGGATTCAGAAGAAGTGCAGATTCATACAGAGAACTCTTCATTCGCTTTCACTTCCGCTCGGATTATTTCATTTCGGACTAGATCGTACTCAATGTCGAACGATCTTTTGACCATTGATCTGCAAAAATAACGATGGGTTTAGCAAACGCCAGAAGTCATAAAGGAGTCTGGCGGATTCTGAAGGTGATTCAGAAACAAGGTAAAATGACTTTTTTAAATTTGATAAGAGTTAGTGAACTAAATTCATTAGGGCTACAAAAACCATCAGTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATGAGAATCAGAAGCATCATA</pcr_primer_p1>
		<pcr_primer_p2>CGAAATGAAGAAATGAAATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAATGAGAATCAGAAGCATCATATGTTTTGGAGATGTTCCACGAAAATGAGAAATTGAAAAGAAACAAAACGGTTTAAGTATGGAAAAGTGGGGAGGTGGGGGATTAGTTGAACGTCTCGGATCCGGTGTTGTTTCGAATTACTTCTTCTTCTTCTTCTTATTCTCTTTTTGGGATAGTGGTTAGCCCTTCTCCAATTTACTCTTCATTCCGTAGTTTTCTACTTTTTTATTTCATTTCTTCATTTCG</canonical_amplicon>
		<polymorphic_amplicon>GAATGAGAATCAGAAGCATCATATGTTTTGGAGATGTTCCACGAAAATGAGAAATTGAAAAGAAACAAAACGGTTTAAGTATGGAAAAGTGGGGAGGTGGGGGATTAGTTGAACGTCTCGGATCCGGTGTTGTTTCGAATTARTTCTTCTTCTTCTTCTTATTCTCTTTTTGGGATAGTGGTTAGCCCTTCTCCAATTTACTCTTCATTCCGTAGTTTTCTACTTTTTTATTTCATTTCTTCATTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25892</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>237106</contig_pos>
        <strand></strand>
        <context>tttcagcatt[T/A]ttkcgaaaga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTATCAGCTTTCAAGCATTTTTAATCAGTTTTTCAGCGTTTTTCAGCATT</left_flank>
        <right_flank>TTTCGAAAGAATGAAGCAAAAAAAAAAGGAATTCCATGCTGTCGGAAACC</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGTCTACCGTAGCACGTAACAGGTGACCCACACGACACACCGTCCCCCCGTCCGACTGATCTCGATAGACGGAACGCAACGCTCTACAGACGGAACGCTCGAAAACAGTCGAAAAACGAAAAACCCCTCGGTTCACTCGAAAATCCGCAGCCTCCGCTTCACACTCCTCAGAAAGAACCCGGGAACATCCCATGGTAGATCTCGGGGGCTTCCCTCACGAATTCTGAAAGACCACAGAGGGGCGCCTGGCACCTGCCCCCTACTACCCCGGCCACCACGTTCGTGGCGATGGAGATCATCGAGAGTCTTTTAGCGAAACATGACTTCAACCGAAAACCTCCCGAAACGCGCGCGCTTATAAAAGGAGGTGTTTCGTAGCAGCCGACATCTCGCGACTTGCGCCGCCCACTATACTTTGTGTGCAAAAGACACTCCGCCCGCGCGTTGTTTATCAGCTTTCAAGCATTTTTAATCAGTTTTTCAGCGTTTTTCAGCATTTTTTCGAAAGAATGAAGCAAAAAAAAAAGGAATTCCATGCTGTCGGAAACCAAGAAAACCGTGTAATCTCGTCAAAAAACAATGAAATTCAGTGAAATCATCGGTTTTCAGAACTTTCAGGTCTTTTCGTTTTTTTTCAATACTCTCAAGACAATTAATAACTGGAAATAGTCGACAACGGGCTGAAAATAGGCGAACAATTGTAAATTTATTGGGGGGTTTGAGGGTTTTTTAAAGAATGTTGCAAAAGGAAAAGAGCGCCAATATAAACCTAATTTCATAAAAATTGCCAGTTTGAGCACAGAAAAGTCAATTTTAGCTGGAATACTGAAATGACGGCATTATTTTTTTCCCGTTTGCGGAGCTTTTTCGATGGGAAAGTGGGATTTCTGCTCACAAATTTTTAATGTTGAAACATTTCGGAATTTCCAAAGTCGGAATATTCCGAGATTCTGAAAAATGTGCTTTCCAATGAAATATTTATTCATCAGAAAAAGTCAA</canonical>
            <polymorphic>ACGTCTACCGTAGCACGTAACAGGTGACCCACACGACACACCGTCCCCCCGTCCGACTGATCTCGATAGACGGAACGCAACGCTCTACAGACGGAACGCTCGAAAACAGTCGAAAAACGAAAAACCCCTCGGTTCACTCGAAAATCCGCAGCCTCCGCTTCACACTCCTCAGAAAGAACCCGGGAACATCCCATGGTAGATCTCGGGGGCTTCCCTCACGAATTCTGAAAGACCACAGAGGGGCGCCTGGCACCTGCCCCCTACTACCCCGGCCACCACGTTCGTGGCGATGGAGATCATCGAGAGTCTTTTAGCGAAACATGACTTCAACCGAAAACCTCCCGAAACGCGCGCGCTTATAAAAGGAGGTGTTTCGTAGCAGCCGACATCTCGCGACTTGCGCCGCCCACTATACTTTGTGTGCAAAAGACACTCCGCCCGCGCGTTGTTTATCAGCTTTCAAGCATTTTTAATCAGTTTTTCAGCGTTTTTCAGCATTWTTTCGAAAGAATGAAGCAAAAAAAAAAGGAATTCCATGCTGTCGGAAACCAAGAAAACCGTGTAATCTCGTCAAAAAACAATGAAATTCAGTGAAATCATCGGTTTTCAGAACTTTCAGGTCTTTTCGTTTTTTTTCAATACTCTCAAGACAATTAATAACTGGAAATAGTCGACAACGGGCTGAAAATAGGCGAACAATTGTAAATTTATTGGGGGGTTTGAGGGTTTTTTAAAGAATGTTGCAAAAGGAAAAGAGCGCCAATATAAACCTAATTTCATAAAAATTGCCAGTTTGAGCACAGAAAAGTCAATTTTAGCTGGAATACTGAAATGACGGCATTATTTTTTTCCCGTTTGCGGAGCTTTTTCGATGGGAAAGTGGGATTTCTGCTCACAAATTTTTAATGTTGAAACATTTCGGAATTTCCAAAGTCGGAATATTCCGAGATTCTGAAAAATGTGCTTTCCAATGAAATATTTATTCATCAGAAAAAGTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTTTTAGCGAAACATGACTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTCTGAAAACCGATGATT</pcr_primer_p2>
		<pcr_amplicon_size>310</pcr_amplicon_size>
		<canonical_amplicon>GTCTTTTAGCGAAACATGACTTCAACCGAAAACCTCCCGAAACGCGCGCGCTTATAAAAGGAGGTGTTTCGTAGCAGCCGACATCTCGCGACTTGCGCCGCCCACTATACTTTGTGTGCAAAAGACACTCCGCCCGCGCGTTGTTTATCAGCTTTCAAGCATTTTTAATCAGTTTTTCAGCGTTTTTCAGCATTTTTTCGAAAGAATGAAGCAAAAAAAAAAGGAATTCCATGCTGTCGGAAACCAAGAAAACCGTGTAATCTCGTCAAAAAACAATGAAATTCAGTGAAATCATCGGTTTTCAGAACTT</canonical_amplicon>
		<polymorphic_amplicon>GTCTTTTAGCGAAACATGACTTCAACCGAAAACCTCCCGAAACGCGCGCGCTTATAAAAGGAGGTGTTTCGTAGCAGCCGACATCTCGCGACTTGCGCCGCCCACTATACTTTGTGTGCAAAAGACACTCCGCCCGCGCGTTGTTTATCAGCTTTCAAGCATTTTTAATCAGTTTTTCAGCGTTTTTCAGCATTWTTTCGAAAGAATGAAGCAAAAAAAAAAGGAATTCCATGCTGTCGGAAACCAAGAAAACCGTGTAATCTCGTCAAAAAACAATGAAATTCAGTGAAATCATCGGTTTTCAGAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25893</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>237109</contig_pos>
        <strand></strand>
        <context>cagcattwtt[T/G]cgaaagaatg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TCAGCTTTCAAGCATTTTTAATCAGTTTTTCAGCGTTTTTCAGCATTTTT</left_flank>
        <right_flank>CGAAAGAATGAAGCAAAAAAAAAAGGAATTCCATGCTGTCGGAAACCAAG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTACCGTAGCACGTAACAGGTGACCCACACGACACACCGTCCCCCCGTCCGACTGATCTCGATAGACGGAACGCAACGCTCTACAGACGGAACGCTCGAAAACAGTCGAAAAACGAAAAACCCCTCGGTTCACTCGAAAATCCGCAGCCTCCGCTTCACACTCCTCAGAAAGAACCCGGGAACATCCCATGGTAGATCTCGGGGGCTTCCCTCACGAATTCTGAAAGACCACAGAGGGGCGCCTGGCACCTGCCCCCTACTACCCCGGCCACCACGTTCGTGGCGATGGAGATCATCGAGAGTCTTTTAGCGAAACATGACTTCAACCGAAAACCTCCCGAAACGCGCGCGCTTATAAAAGGAGGTGTTTCGTAGCAGCCGACATCTCGCGACTTGCGCCGCCCACTATACTTTGTGTGCAAAAGACACTCCGCCCGCGCGTTGTTTATCAGCTTTCAAGCATTTTTAATCAGTTTTTCAGCGTTTTTCAGCATTTTTTCGAAAGAATGAAGCAAAAAAAAAAGGAATTCCATGCTGTCGGAAACCAAGAAAACCGTGTAATCTCGTCAAAAAACAATGAAATTCAGTGAAATCATCGGTTTTCAGAACTTTCAGGTCTTTTCGTTTTTTTTCAATACTCTCAAGACAATTAATAACTGGAAATAGTCGACAACGGGCTGAAAATAGGCGAACAATTGTAAATTTATTGGGGGGTTTGAGGGTTTTTTAAAGAATGTTGCAAAAGGAAAAGAGCGCCAATATAAACCTAATTTCATAAAAATTGCCAGTTTGAGCACAGAAAAGTCAATTTTAGCTGGAATACTGAAATGACGGCATTATTTTTTTCCCGTTTGCGGAGCTTTTTCGATGGGAAAGTGGGATTTCTGCTCACAAATTTTTAATGTTGAAACATTTCGGAATTTCCAAAGTCGGAATATTCCGAGATTCTGAAAAATGTGCTTTCCAATGAAATATTTATTCATCAGAAAAAGTCAATCA</canonical>
            <polymorphic>TCTACCGTAGCACGTAACAGGTGACCCACACGACACACCGTCCCCCCGTCCGACTGATCTCGATAGACGGAACGCAACGCTCTACAGACGGAACGCTCGAAAACAGTCGAAAAACGAAAAACCCCTCGGTTCACTCGAAAATCCGCAGCCTCCGCTTCACACTCCTCAGAAAGAACCCGGGAACATCCCATGGTAGATCTCGGGGGCTTCCCTCACGAATTCTGAAAGACCACAGAGGGGCGCCTGGCACCTGCCCCCTACTACCCCGGCCACCACGTTCGTGGCGATGGAGATCATCGAGAGTCTTTTAGCGAAACATGACTTCAACCGAAAACCTCCCGAAACGCGCGCGCTTATAAAAGGAGGTGTTTCGTAGCAGCCGACATCTCGCGACTTGCGCCGCCCACTATACTTTGTGTGCAAAAGACACTCCGCCCGCGCGTTGTTTATCAGCTTTCAAGCATTTTTAATCAGTTTTTCAGCGTTTTTCAGCATTTTTKCGAAAGAATGAAGCAAAAAAAAAAGGAATTCCATGCTGTCGGAAACCAAGAAAACCGTGTAATCTCGTCAAAAAACAATGAAATTCAGTGAAATCATCGGTTTTCAGAACTTTCAGGTCTTTTCGTTTTTTTTCAATACTCTCAAGACAATTAATAACTGGAAATAGTCGACAACGGGCTGAAAATAGGCGAACAATTGTAAATTTATTGGGGGGTTTGAGGGTTTTTTAAAGAATGTTGCAAAAGGAAAAGAGCGCCAATATAAACCTAATTTCATAAAAATTGCCAGTTTGAGCACAGAAAAGTCAATTTTAGCTGGAATACTGAAATGACGGCATTATTTTTTTCCCGTTTGCGGAGCTTTTTCGATGGGAAAGTGGGATTTCTGCTCACAAATTTTTAATGTTGAAACATTTCGGAATTTCCAAAGTCGGAATATTCCGAGATTCTGAAAAATGTGCTTTCCAATGAAATATTTATTCATCAGAAAAAGTCAATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>203 198 168 162 133 61 37 28 10</canonical_bands>
                <polymorphic_bands>371 198 162 133 61 37 28 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTTTTAGCGAAACATGACTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTCTGAAAACCGATGATT</pcr_primer_p2>
		<pcr_amplicon_size>310</pcr_amplicon_size>
		<canonical_amplicon>GTCTTTTAGCGAAACATGACTTCAACCGAAAACCTCCCGAAACGCGCGCGCTTATAAAAGGAGGTGTTTCGTAGCAGCCGACATCTCGCGACTTGCGCCGCCCACTATACTTTGTGTGCAAAAGACACTCCGCCCGCGCGTTGTTTATCAGCTTTCAAGCATTTTTAATCAGTTTTTCAGCGTTTTTCAGCATTTTTTCGAAAGAATGAAGCAAAAAAAAAAGGAATTCCATGCTGTCGGAAACCAAGAAAACCGTGTAATCTCGTCAAAAAACAATGAAATTCAGTGAAATCATCGGTTTTCAGAACTT</canonical_amplicon>
		<polymorphic_amplicon>GTCTTTTAGCGAAACATGACTTCAACCGAAAACCTCCCGAAACGCGCGCGCTTATAAAAGGAGGTGTTTCGTAGCAGCCGACATCTCGCGACTTGCGCCGCCCACTATACTTTGTGTGCAAAAGACACTCCGCCCGCGCGTTGTTTATCAGCTTTCAAGCATTTTTAATCAGTTTTTCAGCGTTTTTCAGCATTTTTKCGAAAGAATGAAGCAAAAAAAAAAGGAATTCCATGCTGTCGGAAACCAAGAAAACCGTGTAATCTCGTCAAAAAACAATGAAATTCAGTGAAATCATCGGTTTTCAGAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25894</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>237270</contig_pos>
        <strand></strand>
        <context>TTAATAACTG[G/A]AAATAGTCGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTCAGGTCTTTTCGTTTTTTTTCAATACTCTCAAGACAATTAATAACTG</left_flank>
        <right_flank>AAATAGTCGACAACGGGCTGAAAATAGGCGAACAATTGTAAATTTATTGG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCTCAGAAAGAACCCGGGAACATCCCATGGTAGATCTCGGGGGCTTCCCTCACGAATTCTGAAAGACCACAGAGGGGCGCCTGGCACCTGCCCCCTACTACCCCGGCCACCACGTTCGTGGCGATGGAGATCATCGAGAGTCTTTTAGCGAAACATGACTTCAACCGAAAACCTCCCGAAACGCGCGCGCTTATAAAAGGAGGTGTTTCGTAGCAGCCGACATCTCGCGACTTGCGCCGCCCACTATACTTTGTGTGCAAAAGACACTCCGCCCGCGCGTTGTTTATCAGCTTTCAAGCATTTTTAATCAGTTTTTCAGCGTTTTTCAGCATTTTTTCGAAAGAATGAAGCAAAAAAAAAAGGAATTCCATGCTGTCGGAAACCAAGAAAACCGTGTAATCTCGTCAAAAAACAATGAAATTCAGTGAAATCATCGGTTTTCAGAACTTTCAGGTCTTTTCGTTTTTTTTCAATACTCTCAAGACAATTAATAACTGGAAATAGTCGACAACGGGCTGAAAATAGGCGAACAATTGTAAATTTATTGGGGGGTTTGAGGGTTTTTTAAAGAATGTTGCAAAAGGAAAAGAGCGCCAATATAAACCTAATTTCATAAAAATTGCCAGTTTGAGCACAGAAAAGTCAATTTTAGCTGGAATACTGAAATGACGGCATTATTTTTTTCCCGTTTGCGGAGCTTTTTCGATGGGAAAGTGGGATTTCTGCTCACAAATTTTTAATGTTGAAACATTTCGGAATTTCCAAAGTCGGAATATTCCGAGATTCTGAAAAATGTGCTTTCCAATGAAATATTTATTCATCAGAAAAAGTCAATCAAAGTTGGCAAGTGGAAGCATAACCTAGGATCAAAAGTGAACTTCACAGAAGACACATAAAAAACATTTAATTACAGATATGAGAGTGAGCAAACATATAAAGATAAGGAACATTATGTACATATTTAGAATTCTAGCTGATTCTTCTAGTGTTTGATCATG</canonical>
            <polymorphic>CTCCTCAGAAAGAACCCGGGAACATCCCATGGTAGATCTCGGGGGCTTCCCTCACGAATTCTGAAAGACCACAGAGGGGCGCCTGGCACCTGCCCCCTACTACCCCGGCCACCACGTTCGTGGCGATGGAGATCATCGAGAGTCTTTTAGCGAAACATGACTTCAACCGAAAACCTCCCGAAACGCGCGCGCTTATAAAAGGAGGTGTTTCGTAGCAGCCGACATCTCGCGACTTGCGCCGCCCACTATACTTTGTGTGCAAAAGACACTCCGCCCGCGCGTTGTTTATCAGCTTTCAAGCATTTTTAATCAGTTTTTCAGCGTTTTTCAGCATTTTTTCGAAAGAATGAAGCAAAAAAAAAAGGAATTCCATGCTGTCGGAAACCAAGAAAACCGTGTAATCTCGTCAAAAAACAATGAAATTCAGTGAAATCATCGGTTTTCAGAACTTTCAGGTCTTTTCGTTTTTTTTCAATACTCTCAAGACAATTAATAACTGRAAATAGTCGACAACGGGCTGAAAATAGGCGAACAATTGTAAATTTATTGGGGGGTTTGAGGGTTTTTTAAAGAATGTTGCAAAAGGAAAAGAGCGCCAATATAAACCTAATTTCATAAAAATTGCCAGTTTGAGCACAGAAAAGTCAATTTTAGCTGGAATACTGAAATGACGGCATTATTTTTTTCCCGTTTGCGGAGCTTTTTCGATGGGAAAGTGGGATTTCTGCTCACAAATTTTTAATGTTGAAACATTTCGGAATTTCCAAAGTCGGAATATTCCGAGATTCTGAAAAATGTGCTTTCCAATGAAATATTTATTCATCAGAAAAAGTCAATCAAAGTTGGCAAGTGGAAGCATAACCTAGGATCAAAAGTGAACTTCACAGAAGACACATAAAAAACATTTAATTACAGATATGAGAGTGAGCAAACATATAAAGATAAGGAACATTATGTACATATTTAGAATTCTAGCTGATTCTTCTAGTGTTTGATCATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCAGAACTTTCAGGTCTTT</pcr_primer_p1>
		<pcr_primer_p2>AATAATGCCGTCATTTCAGTAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCAGAACTTTCAGGTCTTTTCGTTTTTTTTCAATACTCTCAAGACAATTAATAACTGGAAATAGTCGACAACGGGCTGAAAATAGGCGAACAATTGTAAATTTATTGGGGGGTTTGAGGGTTTTTTAAAGAATGTTGCAAAAGGAAAAGAGCGCCAATATAAACCTAATTTCATAAAAATTGCCAGTTTGAGCACAGAAAAGTCAATTTTAGCTGGAATACTGAAATGACGGCATTATT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCAGAACTTTCAGGTCTTTTCGTTTTTTTTCAATACTCTCAAGACAATTAATAACTGRAAATAGTCGACAACGGGCTGAAAATAGGCGAACAATTGTAAATTTATTGGGGGGTTTGAGGGTTTTTTAAAGAATGTTGCAAAAGGAAAAGAGCGCCAATATAAACCTAATTTCATAAAAATTGCCAGTTTGAGCACAGAAAAGTCAATTTTAGCTGGAATACTGAAATGACGGCATTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25895</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>237361</contig_pos>
        <strand>+</strand>
        <context>AAAAGGAAAA[A/G]AGCGCCAATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTATTGGGGGGTTTGAGGGTTTTTTAAAGAATGTTGCAAAAGGAAAA</left_flank>
        <right_flank>AGCGCCAATATAAACCTAATTTCATAAAAATTGCCAGTTTGAGCACAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCCCCTACTACCCCGGCCACCACGTTCGTGGCGATGGAGATCATCGAGAGTCTTTTAGCGAAACATGACTTCAACCGAAAACCTCCCGAAACGCGCGCGCTTATAAAAGGAGGTGTTTCGTAGCAGCCGACATCTCGCGACTTGCGCCGCCCACTATACTTTGTGTGCAAAAGACACTCCGCCCGCGCGTTGTTTATCAGCTTTCAAGCATTTTTAATCAGTTTTTCAGCGTTTTTCAGCATTTTTTCGAAAGAATGAAGCAAAAAAAAAAGGAATTCCATGCTGTCGGAAACCAAGAAAACCGTGTAATCTCGTCAAAAAACAATGAAATTCAGTGAAATCATCGGTTTTCAGAACTTTCAGGTCTTTTCGTTTTTTTTCAATACTCTCAAGACAATTAATAACTGGAAATAGTCGACAACGGGCTGAAAATAGGCGAACAATTGTAAATTTATTGGGGGGTTTGAGGGTTTTTTAAAGAATGTTGCAAAAGGAAAAGAGCGCCAATATAAACCTAATTTCATAAAAATTGCCAGTTTGAGCACAGAAAAGTCAATTTTAGCTGGAATACTGAAATGACGGCATTATTTTTTTCCCGTTTGCGGAGCTTTTTCGATGGGAAAGTGGGATTTCTGCTCACAAATTTTTAATGTTGAAACATTTCGGAATTTCCAAAGTCGGAATATTCCGAGATTCTGAAAAATGTGCTTTCCAATGAAATATTTATTCATCAGAAAAAGTCAATCAAAGTTGGCAAGTGGAAGCATAACCTAGGATCAAAAGTGAACTTCACAGAAGACACATAAAAAACATTTAATTACAGATATGAGAGTGAGCAAACATATAAAGATAAGGAACATTATGTACATATTTAGAATTCTAGCTGATTCTTCTAGTGTTTGATCATGAACTTCCACAGATCTTCCAAGTGATTGGCGAATCCGATCGAGAAGATTATTGCAGATATAGCTGGGAGGACCATGGCTGGAGTGGTTTTTG</canonical>
            <polymorphic>GCCCCCTACTACCCCGGCCACCACGTTCGTGGCGATGGAGATCATCGAGAGTCTTTTAGCGAAACATGACTTCAACCGAAAACCTCCCGAAACGCGCGCGCTTATAAAAGGAGGTGTTTCGTAGCAGCCGACATCTCGCGACTTGCGCCGCCCACTATACTTTGTGTGCAAAAGACACTCCGCCCGCGCGTTGTTTATCAGCTTTCAAGCATTTTTAATCAGTTTTTCAGCGTTTTTCAGCATTTTTTCGAAAGAATGAAGCAAAAAAAAAAGGAATTCCATGCTGTCGGAAACCAAGAAAACCGTGTAATCTCGTCAAAAAACAATGAAATTCAGTGAAATCATCGGTTTTCAGAACTTTCAGGTCTTTTCGTTTTTTTTCAATACTCTCAAGACAATTAATAACTGGAAATAGTCGACAACGGGCTGAAAATAGGCGAACAATTGTAAATTTATTGGGGGGTTTGAGGGTTTTTTAAAGAATGTTGCAAAAGGAAAARAGCGCCAATATAAACCTAATTTCATAAAAATTGCCAGTTTGAGCACAGAAAAGTCAATTTTAGCTGGAATACTGAAATGACGGCATTATTTTTTTCCCGTTTGCGGAGCTTTTTCGATGGGAAAGTGGGATTTCTGCTCACAAATTTTTAATGTTGAAACATTTCGGAATTTCCAAAGTCGGAATATTCCGAGATTCTGAAAAATGTGCTTTCCAATGAAATATTTATTCATCAGAAAAAGTCAATCAAAGTTGGCAAGTGGAAGCATAACCTAGGATCAAAAGTGAACTTCACAGAAGACACATAAAAAACATTTAATTACAGATATGAGAGTGAGCAAACATATAAAGATAAGGAACATTATGTACATATTTAGAATTCTAGCTGATTCTTCTAGTGTTTGATCATGAACTTCCACAGATCTTCCAAGTGATTGGCGAATCCGATCGAGAAGATTATTGCAGATATAGCTGGGAGGACCATGGCTGGAGTGGTTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCAGAACTTTCAGGTCTTT</pcr_primer_p1>
		<pcr_primer_p2>AATAATGCCGTCATTTCAGTAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCAGAACTTTCAGGTCTTTTCGTTTTTTTTCAATACTCTCAAGACAATTAATAACTGGAAATAGTCGACAACGGGCTGAAAATAGGCGAACAATTGTAAATTTATTGGGGGGTTTGAGGGTTTTTTAAAGAATGTTGCAAAAGGAAAAGAGCGCCAATATAAACCTAATTTCATAAAAATTGCCAGTTTGAGCACAGAAAAGTCAATTTTAGCTGGAATACTGAAATGACGGCATTATT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCAGAACTTTCAGGTCTTTTCGTTTTTTTTCAATACTCTCAAGACAATTAATAACTGGAAATAGTCGACAACGGGCTGAAAATAGGCGAACAATTGTAAATTTATTGGGGGGTTTGAGGGTTTTTTAAAGAATGTTGCAAAAGGAAAARAGCGCCAATATAAACCTAATTTCATAAAAATTGCCAGTTTGAGCACAGAAAAGTCAATTTTAGCTGGAATACTGAAATGACGGCATTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25896</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>238767</contig_pos>
        <strand>-</strand>
        <context>TCGACTATTT[A/G]CAGTTATTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAATAAATTTACAATTGTTCGCCTATTTTCAGCCCGTTGTCGACTATTT</left_flank>
        <right_flank>CAGTTATTAAATGTCTTGAGAGTATTGAAAAAAAACGAAAAGACGTGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAATTCTGGAGCAGACGACGTAAATTGAGGCGAAAGCCAGAATATCATTTGAGATCCAATTTCCAGCACATTCATGGTAGAGACCAAAAGATAGGGAGACTAGTAGTGAGGCGTACATCATTGACTCTTCATGATAGTAGAAGTAAAAGGACATGTGTTGACTGAATGATTCCAGAAGGATGATGTGGATACAGGCAACAGATGCCCAGATGGGTACGTGCACGGCAAAGAGTTCGGCAATGATGTCGAGGAGACTGAAAGAGATGGGATTCAAATTTTTGGGATTTTGAAAAAAAATGCATGAAAAAGCTGTAGAACATTTTTTGGCGATAAATTTTTCGTGGGATTACGGTAAGCGGAAGTCCGCAAGCATCAAAAACGAAGCAAATAACGTGAAACCTGGAGACTTCACCGATTCCGAGGAACCGANNNNNNNNNNTCAAACCCCCCAATAAATTTACAATTGTTCGCCTATTTTCAGCCCGTTGTCGACTATTTCCAGTTATTAAATGTCTTGAGAGTATTGAAAAAAAACGAAAAGACGTGAAAGTTCTGAAAACCGATGATTTCACTGAATTTCATTGTTTTTTGACGAGATTACACGGTTTTCTTGGTTTCCGACAGCATGGAATTCCTTTTTTTTTTGCTTCATTCTTTGGAAAAAATGCTGAAAAACGCTGAAAAAATGATTAAAAATGCTTGAAACGCTGATAAACAACGCGCGGGCGGAGTGTCTTTTGCACACAAAGTATAGTGGACGGCGCAAGTCGCGATAGGTTCCTCGGAGACAACCCTTTCCTCGGAATCGGTGGAGTGTCAAAACCTGTATTAGAAAGGCGAGCCTATCTCCAAGGTACCACCGGAGGGCCTTTCTATTGCAGGGGCACTTCAATTAGAGGGAACCCTTCTTTTTTTTCTGACCATTTTTCCAGAATATTTTCATCAAAACATTTGCCGACTCTTAGTTCAAAATCATGCAGAAATTTAGAAAAGTGTTGA</canonical>
            <polymorphic>TGAATTCTGGAGCAGACGACGTAAATTGAGGCGAAAGCCAGAATATCATTTGAGATCCAATTTCCAGCACATTCATGGTAGAGACCAAAAGATAGGGAGACTAGTAGTGAGGCGTACATCATTGACTCTTCATGATAGTAGAAGTAAAAGGACATGTGTTGACTGAATGATTCCAGAAGGATGATGTGGATACAGGCAACAGATGCCCAGATGGGTACGTGCACGGCAAAGAGTTCGGCAATGATGTCGAGGAGACTGAAAGAGATGGGATTCAAATTTTTGGGATTTTGAAAAAAAATGCATGAAAAAGCTGTAGAACATTTTTTGGCGATAAATTTTTCGTGGGATTACGGTAAGCGGAAGTCCGCAAGCATCAAAAACGAAGCAAATAACGTGAAACCTGGAGACTTCACCGATTCCGAGGAACCGANNNNNNNNNNTCAAACCCCCCAATAAATTTACAATTGTTCGCCTATTTTCAGCCCGTTGTCGACTATTTRCAGTTATTAAATGTCTTGAGAGTATTGAAAAAAAACGAAAAGACGTGAAAGTTCTGAAAACCGATGATTTCACTGAATTTCATTGTTTTTTGACGAGATTACACGGTTTTCTTGGTTTCCGACAGCATGGAATTCCTTTTTTTTTTGCTTCATTCTTTGGAAAAAATGCTGAAAAACGCTGAAAAAATGATTAAAAATGCTTGAAACGCTGATAAACAACGCGCGGGCGGAGTGTCTTTTGCACACAAAGTATAGTGGACGGCGCAAGTCGCGATAGGTTCCTCGGAGACAACCCTTTCCTCGGAATCGGTGGAGTGTCAAAACCTGTATTAGAAAGGCGAGCCTATCTCCAAGGTACCACCGGAGGGCCTTTCTATTGCAGGGGCACTTCAATTAGAGGGAACCCTTCTTTTTTTTCTGACCATTTTTCCAGAATATTTTCATCAAAACATTTGCCGACTCTTAGTTCAAAATCATGCAGAAATTTAGAAAAGTGTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCAAAAACGAAGCAAATAA</pcr_primer_p1>
		<pcr_primer_p2>AAACCAAGAAAACCGTGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CATCAAAAACGAAGCAAATAACGTGAAACCTGGAGACTTCACCGATTCCGAGGAACCGANNNNNNNNNNTCAAACCCCCCAATAAATTTACAATTGTTCGCCTATTTTCAGCCCGTTGTCGACTATTTCCAGTTATTAAATGTCTTGAGAGTATTGAAAAAAAACGAAAAGACGTGAAAGTTCTGAAAACCGATGATTTCACTGAATTTCATTGTTTTTTGACGAGATTACACGGTTTTCTTGGTTT</canonical_amplicon>
		<polymorphic_amplicon>CATCAAAAACGAAGCAAATAACGTGAAACCTGGAGACTTCACCGATTCCGAGGAACCGANNNNNNNNNNTCAAACCCCCCAATAAATTTACAATTGTTCGCCTATTTTCAGCCCGTTGTCGACTATTTRCAGTTATTAAATGTCTTGAGAGTATTGAAAAAAAACGAAAAGACGTGAAAGTTCTGAAAACCGATGATTTCACTGAATTTCATTGTTTTTTGACGAGATTACACGGTTTTCTTGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25897</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>239137</contig_pos>
        <strand>+</strand>
        <context>ACCGGAGGGC[C/T]TTTCTATTGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAACCTGTATTAGAAAGGCGAGCCTATCTCCAAGGTACCACCGGAGGGC</left_flank>
        <right_flank>TTTCTATTGCAGGGGCACTTCAATTAGAGGGAACCCTTCTTTTTTTTCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCATCAAAAACGAAGCAAATAACGTGAAACCTGGAGACTTCACCGATTCCGAGGAACCGANNNNNNNNNNTCAAACCCCCCAATAAATTTACAATTGTTCGCCTATTTTCAGCCCGTTGTCGACTATTTCCAGTTATTAAATGTCTTGAGAGTATTGAAAAAAAACGAAAAGACGTGAAAGTTCTGAAAACCGATGATTTCACTGAATTTCATTGTTTTTTGACGAGATTACACGGTTTTCTTGGTTTCCGACAGCATGGAATTCCTTTTTTTTTTGCTTCATTCTTTGGAAAAAATGCTGAAAAACGCTGAAAAAATGATTAAAAATGCTTGAAACGCTGATAAACAACGCGCGGGCGGAGTGTCTTTTGCACACAAAGTATAGTGGACGGCGCAAGTCGCGATAGGTTCCTCGGAGACAACCCTTTCCTCGGAATCGGTGGAGTGTCAAAACCTGTATTAGAAAGGCGAGCCTATCTCCAAGGTACCACCGGAGGGCCTTTCTATTGCAGGGGCACTTCAATTAGAGGGAACCCTTCTTTTTTTTCTGACCATTTTTCCAGAATATTTTCATCAAAACATTTGCCGACTCTTAGTTCAAAATCATGCAGAAATTTAGAAAAGTGTTGAGCAAAAAAGCGTTTTCCAACAAAATTCTGTGAAATCTTGGAAATTCCCGAGCATTTTTCTTTGAAAACGTACGGAAATTATTAACTCCAAACAACAGGTTTTGAAGAGGACCTTTCTACTATTCAAAACCCGCTATCAAAGAGGCCCTTCTAATACAGCTTTTACGGCAAATTTCGGTCACATTTCTGTTCAAAAATTAATCTGTTGACGAACTTTCTGTTTTCGTCCAAAAACAATGGTCTCCTACCGAATTACTCTAATGCCCTTTTGTTTTCAGTTCAATTTTTTGAAGACTCACTCGAGTTGAATGTAGACTCTCGGTCCATCGTCACTCCTCGGTAACAAACTGAGTGCACTCAGCGAATACGAG</canonical>
            <polymorphic>GCATCAAAAACGAAGCAAATAACGTGAAACCTGGAGACTTCACCGATTCCGAGGAACCGANNNNNNNNNNTCAAACCCCCCAATAAATTTACAATTGTTCGCCTATTTTCAGCCCGTTGTCGACTATTTCCAGTTATTAAATGTCTTGAGAGTATTGAAAAAAAACGAAAAGACGTGAAAGTTCTGAAAACCGATGATTTCACTGAATTTCATTGTTTTTTGACGAGATTACACGGTTTTCTTGGTTTCCGACAGCATGGAATTCCTTTTTTTTTTGCTTCATTCTTTGGAAAAAATGCTGAAAAACGCTGAAAAAATGATTAAAAATGCTTGAAACGCTGATAAACAACGCGCGGGCGGAGTGTCTTTTGCACACAAAGTATAGTGGACGGCGCAAGTCGCGATAGGTTCCTCGGAGACAACCCTTTCCTCGGAATCGGTGGAGTGTCAAAACCTGTATTAGAAAGGCGAGCCTATCTCCAAGGTACCACCGGAGGGCYTTTCTATTGCAGGGGCACTTCAATTAGAGGGAACCCTTCTTTTTTTTCTGACCATTTTTCCAGAATATTTTCATCAAAACATTTGCCGACTCTTAGTTCAAAATCATGCAGAAATTTAGAAAAGTGTTGAGCAAAAAAGCGTTTTCCAACAAAATTCTGTGAAATCTTGGAAATTCCCGAGCATTTTTCTTTGAAAACGTACGGAAATTATTAACTCCAAACAACAGGTTTTGAAGAGGACCTTTCTACTATTCAAAACCCGCTATCAAAGAGGCCCTTCTAATACAGCTTTTACGGCAAATTTCGGTCACATTTCTGTTCAAAAATTAATCTGTTGACGAACTTTCTGTTTTCGTCCAAAAACAATGGTCTCCTACCGAATTACTCTAATGCCCTTTTGTTTTCAGTTCAATTTTTTGAAGACTCACTCGAGTTGAATGTAGACTCTCGGTCCATCGTCACTCCTCGGTAACAAACTGAGTGCACTCAGCGAATACGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>496 242 177 50 35</canonical_bands>
                <polymorphic_bands>738 177 50 35</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>498 276 226</canonical_bands>
                <polymorphic_bands>774 226</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>360 276 212 112 26 14</canonical_bands>
                <polymorphic_bands>360 302 212 112 14</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>496 242 227 35</canonical_bands>
                <polymorphic_bands>738 227 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTCTTTTGCACACAAAGTATAG</pcr_primer_p1>
		<pcr_primer_p2>CTGCATGATTTTGAACTAAGAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTCTTTTGCACACAAAGTATAGTGGACGGCGCAAGTCGCGATAGGTTCCTCGGAGACAACCCTTTCCTCGGAATCGGTGGAGTGTCAAAACCTGTATTAGAAAGGCGAGCCTATCTCCAAGGTACCACCGGAGGGCCTTTCTATTGCAGGGGCACTTCAATTAGAGGGAACCCTTCTTTTTTTTCTGACCATTTTTCCAGAATATTTTCATCAAAACATTTGCCGACTCTTAGTTCAAAATCATGCAG</canonical_amplicon>
		<polymorphic_amplicon>TGTCTTTTGCACACAAAGTATAGTGGACGGCGCAAGTCGCGATAGGTTCCTCGGAGACAACCCTTTCCTCGGAATCGGTGGAGTGTCAAAACCTGTATTAGAAAGGCGAGCCTATCTCCAAGGTACCACCGGAGGGCYTTTCTATTGCAGGGGCACTTCAATTAGAGGGAACCCTTCTTTTTTTTCTGACCATTTTTCCAGAATATTTTCATCAAAACATTTGCCGACTCTTAGTTCAAAATCATGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25898</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>263280</contig_pos>
        <strand>+</strand>
        <context>CGGGACGGAT[A/G]ACCACCCGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGTGCCTGAGCCATCCGCATCGCTGGATGAACGTCTGGGCGGGACGGAT</left_flank>
        <right_flank>ACCACCCGGATGACGTTGACCGCCTCCTCCGCCCATTGCCGGATGAATTG</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCAACTGAAAAAAGTATACATGAGGTTTAGAAGGTCAAATGACTAAAGGAAATTTGAGATCTTTCCTGACCTTATTCAGTGTTTACTCTAGAGTATCTCATCGAAATACAAATACTCTTACCTTATCAGCAGCATCCAAATCCACTGGATTAGCTCCTGCTTGAACTGATTCCAATTGTTCTAGAATTTTCGACATCGCATCTTCAGTCTGTCTCAATCTCTCTTGCAATCCTTTCAACTTCTTCTTTCCAAACTTTCCACCGTACTTTGTCTCCATTTCAGAATCCTCCGAATCATCTTCAGAATCGAAATAGTTCCTCTTCTTCCTCTTTGCCTTTTTTCCTTTTGATTTGAATAAAGTATACAATAGGAATAAGACAACTCCAATAGTATAAATCGGTAGCATCCAAGTGAACATGCCTTTCGATCCTCCGGACTGTCCTTCTGCTTGTGCCTGAGCCATCCGCATCGCTGGATGAACGTCTGGGCGGGACGGATAACCACCCGGATGACGTTGACCGCCTCCTCCGCCCATTGCCGGATGAATTGGAGGTCGTTGCTGGTTTATCGATGGTGCTGGTTGAGATGAACGACCGAGGAAACCCATGAGCATCGGATGGAATAGTGTCGGATAGAGCATTGCAAAGCAAACGACAATCACACCGACCACAAGGCCTAGCTTCCATCCTGAAAAGGGTTAATTTTATGATGCGTGACTCTCTAATGAGTTTTATTGGCCCTTTTATCTTAGACACTTTGATTCAGTAAGCCGTAGGGTCTTTTTCTATTAATCGGCTTAAATTGGGATGATTTATTTTGCCGTGGTTAGATTTTTTGAAGAATTAAATGGCTGGAAAATGTGGCTGAAGCTTCAAACGAAAAGCGCCCGGTAGACCAAAACAGTATTTTAATTTAAAAAAAAGTTTATTTGATGAATTCTTTACCAAATTTAAATTGAATTTCGAGAATACAGAGTGACTTTTTGTCGTAAAACTTATC</canonical>
            <polymorphic>GCCAACTGAAAAAAGTATACATGAGGTTTAGAAGGTCAAATGACTAAAGGAAATTTGAGATCTTTCCTGACCTTATTCAGTGTTTACTCTAGAGTATCTCATCGAAATACAAATACTCTTACCTTATCAGCAGCATCCAAATCCACTGGATTAGCTCCTGCTTGAACTGATTCCAATTGTTCTAGAATTTTCGACATCGCATCTTCAGTCTGTCTCAATCTCTCTTGCAATCCTTTCAACTTCTTCTTTCCAAACTTTCCACCGTACTTTGTCTCCATTTCAGAATCCTCCGAATCATCTTCAGAATCGAAATAGTTCCTCTTCTTCCTCTTTGCCTTTTTTCCTTTTGATTTGAATAAAGTATACAATAGGAATAAGACAACTCCAATAGTATAAATCGGTAGCATCCAAGTGAACATGCCTTTCGATCCTCCGGACTGTCCTTCTGCTTGTGCCTGAGCCATCCGCATCGCTGGATGAACGTCTGGGCGGGACGGATRACCACCCGGATGACGTTGACCGCCTCCTCCGCCCATTGCCGGATGAATTGGAGGTCGTTGCTGGTTTATCGATGGTGCTGGTTGAGATGAACGACCGAGGAAACCCATGAGCATCGGATGGAATAGTGTCGGATAGAGCATTGCAAAGCAAACGACAATCACACCGACCACAAGGCCTAGCTTCCATCCTGAAAAGGGTTAATTTTATGATGCGTGACTCTCTAATGAGTTTTATTGGCCCTTTTATCTTAGACACTTTGATTCAGTAAGCCGTAGGGTCTTTTTCTATTAATCGGCTTAAATTGGGATGATTTATTTTGCCGTGGTTAGATTTTTTGAAGAATTAAATGGCTGGAAAATGTGGCTGAAGCTTCAAACGAAAAGCGCCCGGTAGACCAAAACAGTATTTTAATTTAAAAAAAAGTTTATTTGATGAATTCTTTACCAAATTTAAATTGAATTTCGAGAATACAGAGTGACTTTTTGTCGTAAAACTTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATAAATCGGTAGCATCCAAGT</pcr_primer_p1>
		<pcr_primer_p2>AATGCTCTATCCGACACTATTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATAAATCGGTAGCATCCAAGTGAACATGCCTTTCGATCCTCCGGACTGTCCTTCTGCTTGTGCCTGAGCCATCCGCATCGCTGGATGAACGTCTGGGCGGGACGGATAACCACCCGGATGACGTTGACCGCCTCCTCCGCCCATTGCCGGATGAATTGGAGGTCGTTGCTGGTTTATCGATGGTGCTGGTTGAGATGAACGACCGAGGAAACCCATGAGCATCGGATGGAATAGTGTCGGATAGAGCATT</canonical_amplicon>
		<polymorphic_amplicon>TATAAATCGGTAGCATCCAAGTGAACATGCCTTTCGATCCTCCGGACTGTCCTTCTGCTTGTGCCTGAGCCATCCGCATCGCTGGATGAACGTCTGGGCGGGACGGATRACCACCCGGATGACGTTGACCGCCTCCTCCGCCCATTGCCGGATGAATTGGAGGTCGTTGCTGGTTTATCGATGGTGCTGGTTGAGATGAACGACCGAGGAAACCCATGAGCATCGGATGGAATAGTGTCGGATAGAGCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25899</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>263696</contig_pos>
        <strand>+</strand>
        <context>ATTTTAATTT[A/C]AAAAAAAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGAAGCTTCAAACGAAAAGCGCCCGGTAGACCAAAACAGTATTTTAATTT</left_flank>
        <right_flank>AAAAAAAGTTTATTTGATGAATTCTTTACCAAATTTAAATTGAATTTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGCCTTTCGATCCTCCGGACTGTCCTTCTGCTTGTGCCTGAGCCATCCGCATCGCTGGATGAACGTCTGGGCGGGACGGATAACCACCCGGATGACGTTGACCGCCTCCTCCGCCCATTGCCGGATGAATTGGAGGTCGTTGCTGGTTTATCGATGGTGCTGGTTGAGATGAACGACCGAGGAAACCCATGAGCATCGGATGGAATAGTGTCGGATAGAGCATTGCAAAGCAAACGACAATCACACCGACCACAAGGCCTAGCTTCCATCCTGAAAAGGGTTAATTTTATGATGCGTGACTCTCTAATGAGTTTTATTGGCCCTTTTATCTTAGACACTTTGATTCAGTAAGCCGTAGGGTCTTTTTCTATTAATCGGCTTAAATTGGGATGATTTATTTTGCCGTGGTTAGATTTTTTGAAGAATTAAATGGCTGGAAAATGTGGCTGAAGCTTCAAACGAAAAGCGCCCGGTAGACCAAAACAGTATTTTAATTTAAAAAAAAGTTTATTTGATGAATTCTTTACCAAATTTAAATTGAATTTCGAGAATACAGAGTGACTTTTTGTCGTAAAACTTATCTAACTACCGTATTTGCTCTAATAAAAACCAATGCTTTACTTGCACTTTGAGGTCAATTATCTCAATTTCTATAAGAGATAACAAAAAGCGATTAACTAACAAAATATTTTTGAAAGTATGGAAAGAATTTTGTTAGTTGGTCACTTTATGATATTTTTAACAGAAACTGAGAAAATTGGCTCAAAGTTAAAAGTTTTGCGGCTTTCTACTGCAAGATTAACGGTAGTCTGATACAGTATACGAGAAGTGGAATACCATTTCCCAGTGTCTGAAATAAGATTTCTGAAAATCTAAAACCGTTTACATGTTTCTAGCACTTCAGAATATATTTTCAAACACATTCTCCAGGCCCTTGTGTTTCCATATATACGTTTTCAGGTATAATTTTCCAAAATTCTCAGTATGTATTTTGTGTA</canonical>
            <polymorphic>CATGCCTTTCGATCCTCCGGACTGTCCTTCTGCTTGTGCCTGAGCCATCCGCATCGCTGGATGAACGTCTGGGCGGGACGGATAACCACCCGGATGACGTTGACCGCCTCCTCCGCCCATTGCCGGATGAATTGGAGGTCGTTGCTGGTTTATCGATGGTGCTGGTTGAGATGAACGACCGAGGAAACCCATGAGCATCGGATGGAATAGTGTCGGATAGAGCATTGCAAAGCAAACGACAATCACACCGACCACAAGGCCTAGCTTCCATCCTGAAAAGGGTTAATTTTATGATGCGTGACTCTCTAATGAGTTTTATTGGCCCTTTTATCTTAGACACTTTGATTCAGTAAGCCGTAGGGTCTTTTTCTATTAATCGGCTTAAATTGGGATGATTTATTTTGCCGTGGTTAGATTTTTTGAAGAATTAAATGGCTGGAAAATGTGGCTGAAGCTTCAAACGAAAAGCGCCCGGTAGACCAAAACAGTATTTTAATTTMAAAAAAAGTTTATTTGATGAATTCTTTACCAAATTTAAATTGAATTTCGAGAATACAGAGTGACTTTTTGTCGTAAAACTTATCTAACTACCGTATTTGCTCTAATAAAAACCAATGCTTTACTTGCACTTTGAGGTCAATTATCTCAATTTCTATAAGAGATAACAAAAAGCGATTAACTAACAAAATATTTTTGAAAGTATGGAAAGAATTTTGTTAGTTGGTCACTTTATGATATTTTTAACAGAAACTGAGAAAATTGGCTCAAAGTTAAAAGTTTTGCGGCTTTCTACTGCAAGATTAACGGTAGTCTGATACAGTATACGAGAAGTGGAATACCATTTCCCAGTGTCTGAAATAAGATTTCTGAAAATCTAAAACCGTTTACATGTTTCTAGCACTTCAGAATATATTTTCAAACACATTCTCCAGGCCCTTGTGTTTCCATATATACGTTTTCAGGTATAATTTTCCAAAATTCTCAGTATGTATTTTGTGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 464 37</canonical_bands>
                <polymorphic_bands>536 464</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>283 199 141 90 65 65 46 37 30 30 9 5</canonical_bands>
                <polymorphic_bands>283 199 141 90 65 65 46 42 30 30 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCTTTTATCTTAGACACTTTGA</pcr_primer_p1>
		<pcr_primer_p2>CGACAAAAAGTCACTCTGTATTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCCTTTTATCTTAGACACTTTGATTCAGTAAGCCGTAGGGTCTTTTTCTATTAATCGGCTTAAATTGGGATGATTTATTTTGCCGTGGTTAGATTTTTTGAAGAATTAAATGGCTGGAAAATGTGGCTGAAGCTTCAAACGAAAAGCGCCCGGTAGACCAAAACAGTATTTTAATTTAAAAAAAAGTTTATTTGATGAATTCTTTACCAAATTTAAATTGAATTTCGAGAATACAGAGTGACTTTTTGTCG</canonical_amplicon>
		<polymorphic_amplicon>CCCTTTTATCTTAGACACTTTGATTCAGTAAGCCGTAGGGTCTTTTTCTATTAATCGGCTTAAATTGGGATGATTTATTTTGCCGTGGTTAGATTTTTTGAAGAATTAAATGGCTGGAAAATGTGGCTGAAGCTTCAAACGAAAAGCGCCCGGTAGACCAAAACAGTATTTTAATTTMAAAAAAAGTTTATTTGATGAATTCTTTACCAAATTTAAATTGAATTTCGAGAATACAGAGTGACTTTTTGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25900</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>266528</contig_pos>
        <strand>+</strand>
        <context>TTTAAAACTA[C/T]AAWTGRATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTA</left_flank>
        <right_flank>AAATGAATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTGTTGCAGGTAGCGTTCGAACTTGTAACAGTTCGATTCTGTCCGCGTTCTGTTCTGGTACGTGTGCGAAAAAAGGACTGTTCTGAATTGAATCAGTTCGATTTTAGGTCTGTTCGAATTTGAAAACGTTCGAATTCGTCGTACCCCCGAATCCAAAAAATGAAAATATTTTAGGTTACGGTAGCTGTCGTTGTGGTACCTTCCGTCATTGCCCTTTCTCTTCCAGCCACGATTTTTTGTACCAGAAAAGTATCTCAAAGTTTATTTTCCGCTGTTTACAGTTTATTATCGCTACAAATTTTTCGATCCATGTTTTTTCAGATATTCATCTTTTTCAGAACAATTATTCACTTGTATGGGAATTACTGTAGTCGCTGCGAGAAACATTTAACGAAATTACTGTATGCGCCTTTAGTGTCGATTTACGGGGCTTTCTTCTTTTTCTTGTTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTACAAATGAATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATTTTTTCCTGCTTTTTTTCCAGTGGCAGTCACAATCTATCCATTGTAATTGTCGTTGAGCACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCAACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGCTTGGCTCTTCTTTTTTCGCATCTCTATCTCTCTAATGATTGTGTAAATATTCTTCGCAGTATATACACAAGTCTAGTTTGTGATTTCTTTTTTACGCATCGCATTTACTTTTTGAGCCCAAATTTTAAAAAGTTGATT</canonical>
            <polymorphic>CTCTGTTGCAGGTAGCGTTCGAACTTGTAACAGTTCGATTCTGTCCGCGTTCTGTTCTGGTACGTGTGCGAAAAAAGGACTGTTCTGAATTGAATCAGTTCGATTTTAGGTCTGTTCGAATTTGAAAACGTTCGAATTCGTCGTACCCCCGAATCCAAAAAATGAAAATATTTTAGGTTACGGTAGCTGTCGTTGTGGTACCTTCCGTCATTGCCCTTTCTCTTCCAGCCACGATTTTTTGTACCAGAAAAGTATCTCAAAGTTTATTTTCCGCTGTTTACAGTTTATTATCGCTACAAATTTTTCGATCCATGTTTTTTCAGATATTCATCTTTTTCAGAACAATTATTCACTTGTATGGGAATTACTGTAGTCGCTGCGAGAAACATTTAACGAAATTACTGTATGCGCCTTTAGTGTCGATTTACGGGGCTTTCTTCTTTTTCTTGTTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTAYAAATGAATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATTTTTTCCTGCTTTTTTTCCAGTGGCAGTCACAATCTATCCATTGTAATTGTCGTTGAGCACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCAACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGCTTGGCTCTTCTTTTTTCGCATCTCTATCTCTCTAATGATTGTGTAAATATTCTTCGCAGTATATACACAAGTCTAGTTTGTGATTTCTTTTTTACGCATCGCATTTACTTTTTGAGCCCAAATTTTAAAAAGTTGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCACTTGTATGGGAATTACTG</pcr_primer_p1>
		<pcr_primer_p2>AATGAATCTGAATGCATTTTATC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTCACTTGTATGGGAATTACTGTAGTCGCTGCGAGAAACATTTAACGAAATTACTGTATGCGCCTTTAGTGTCGATTTACGGGGCTTTCTTCTTTTTCTTGTTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTACAAATGAATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATT</canonical_amplicon>
		<polymorphic_amplicon>ATTCACTTGTATGGGAATTACTGTAGTCGCTGCGAGAAACATTTAACGAAATTACTGTATGCGCCTTTAGTGTCGATTTACGGGGCTTTCTTCTTTTTCTTGTTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTAYAAATGAATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25901</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>266531</contig_pos>
        <strand>+</strand>
        <context>AAAACTAYAA[A/T]TGRATTTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTACAA</left_flank>
        <right_flank>TGAATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCGTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTGCAGGTAGCGTTCGAACTTGTAACAGTTCGATTCTGTCCGCGTTCTGTTCTGGTACGTGTGCGAAAAAAGGACTGTTCTGAATTGAATCAGTTCGATTTTAGGTCTGTTCGAATTTGAAAACGTTCGAATTCGTCGTACCCCCGAATCCAAAAAATGAAAATATTTTAGGTTACGGTAGCTGTCGTTGTGGTACCTTCCGTCATTGCCCTTTCTCTTCCAGCCACGATTTTTTGTACCAGAAAAGTATCTCAAAGTTTATTTTCCGCTGTTTACAGTTTATTATCGCTACAAATTTTTCGATCCATGTTTTTTCAGATATTCATCTTTTTCAGAACAATTATTCACTTGTATGGGAATTACTGTAGTCGCTGCGAGAAACATTTAACGAAATTACTGTATGCGCCTTTAGTGTCGATTTACGGGGCTTTCTTCTTTTTCTTGTTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTACAAATGAATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATTTTTTCCTGCTTTTTTTCCAGTGGCAGTCACAATCTATCCATTGTAATTGTCGTTGAGCACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCAACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGCTTGGCTCTTCTTTTTTCGCATCTCTATCTCTCTAATGATTGTGTAAATATTCTTCGCAGTATATACACAAGTCTAGTTTGTGATTTCTTTTTTACGCATCGCATTTACTTTTTGAGCCCAAATTTTAAAAAGTTGATTTTC</canonical>
            <polymorphic>TGTTGCAGGTAGCGTTCGAACTTGTAACAGTTCGATTCTGTCCGCGTTCTGTTCTGGTACGTGTGCGAAAAAAGGACTGTTCTGAATTGAATCAGTTCGATTTTAGGTCTGTTCGAATTTGAAAACGTTCGAATTCGTCGTACCCCCGAATCCAAAAAATGAAAATATTTTAGGTTACGGTAGCTGTCGTTGTGGTACCTTCCGTCATTGCCCTTTCTCTTCCAGCCACGATTTTTTGTACCAGAAAAGTATCTCAAAGTTTATTTTCCGCTGTTTACAGTTTATTATCGCTACAAATTTTTCGATCCATGTTTTTTCAGATATTCATCTTTTTCAGAACAATTATTCACTTGTATGGGAATTACTGTAGTCGCTGCGAGAAACATTTAACGAAATTACTGTATGCGCCTTTAGTGTCGATTTACGGGGCTTTCTTCTTTTTCTTGTTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTACAAWTGAATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATTTTTTCCTGCTTTTTTTCCAGTGGCAGTCACAATCTATCCATTGTAATTGTCGTTGAGCACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCAACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGCTTGGCTCTTCTTTTTTCGCATCTCTATCTCTCTAATGATTGTGTAAATATTCTTCGCAGTATATACACAAGTCTAGTTTGTGATTTCTTTTTTACGCATCGCATTTACTTTTTGAGCCCAAATTTTAAAAAGTTGATTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCACTTGTATGGGAATTACTG</pcr_primer_p1>
		<pcr_primer_p2>AATGAATCTGAATGCATTTTATC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTCACTTGTATGGGAATTACTGTAGTCGCTGCGAGAAACATTTAACGAAATTACTGTATGCGCCTTTAGTGTCGATTTACGGGGCTTTCTTCTTTTTCTTGTTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTACAAATGAATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATT</canonical_amplicon>
		<polymorphic_amplicon>ATTCACTTGTATGGGAATTACTGTAGTCGCTGCGAGAAACATTTAACGAAATTACTGTATGCGCCTTTAGTGTCGATTTACGGGGCTTTCTTCTTTTTCTTGTTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTACAAWTGAATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25902</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>266534</contig_pos>
        <strand>+</strand>
        <context>ACTAYAAWTG[A/G]ATTTTCATAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTACAAATG</left_flank>
        <right_flank>ATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCGTTTGTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCAGGTAGCGTTCGAACTTGTAACAGTTCGATTCTGTCCGCGTTCTGTTCTGGTACGTGTGCGAAAAAAGGACTGTTCTGAATTGAATCAGTTCGATTTTAGGTCTGTTCGAATTTGAAAACGTTCGAATTCGTCGTACCCCCGAATCCAAAAAATGAAAATATTTTAGGTTACGGTAGCTGTCGTTGTGGTACCTTCCGTCATTGCCCTTTCTCTTCCAGCCACGATTTTTTGTACCAGAAAAGTATCTCAAAGTTTATTTTCCGCTGTTTACAGTTTATTATCGCTACAAATTTTTCGATCCATGTTTTTTCAGATATTCATCTTTTTCAGAACAATTATTCACTTGTATGGGAATTACTGTAGTCGCTGCGAGAAACATTTAACGAAATTACTGTATGCGCCTTTAGTGTCGATTTACGGGGCTTTCTTCTTTTTCTTGTTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTACAAATGAATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATTTTTTCCTGCTTTTTTTCCAGTGGCAGTCACAATCTATCCATTGTAATTGTCGTTGAGCACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCAACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGCTTGGCTCTTCTTTTTTCGCATCTCTATCTCTCTAATGATTGTGTAAATATTCTTCGCAGTATATACACAAGTCTAGTTTGTGATTTCTTTTTTACGCATCGCATTTACTTTTTGAGCCCAAATTTTAAAAAGTTGATTTTCATA</canonical>
            <polymorphic>TGCAGGTAGCGTTCGAACTTGTAACAGTTCGATTCTGTCCGCGTTCTGTTCTGGTACGTGTGCGAAAAAAGGACTGTTCTGAATTGAATCAGTTCGATTTTAGGTCTGTTCGAATTTGAAAACGTTCGAATTCGTCGTACCCCCGAATCCAAAAAATGAAAATATTTTAGGTTACGGTAGCTGTCGTTGTGGTACCTTCCGTCATTGCCCTTTCTCTTCCAGCCACGATTTTTTGTACCAGAAAAGTATCTCAAAGTTTATTTTCCGCTGTTTACAGTTTATTATCGCTACAAATTTTTCGATCCATGTTTTTTCAGATATTCATCTTTTTCAGAACAATTATTCACTTGTATGGGAATTACTGTAGTCGCTGCGAGAAACATTTAACGAAATTACTGTATGCGCCTTTAGTGTCGATTTACGGGGCTTTCTTCTTTTTCTTGTTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTACAAATGRATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATTTTTTCCTGCTTTTTTTCCAGTGGCAGTCACAATCTATCCATTGTAATTGTCGTTGAGCACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCAACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGCTTGGCTCTTCTTTTTTCGCATCTCTATCTCTCTAATGATTGTGTAAATATTCTTCGCAGTATATACACAAGTCTAGTTTGTGATTTCTTTTTTACGCATCGCATTTACTTTTTGAGCCCAAATTTTAAAAAGTTGATTTTCATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>477 175 164 112 32 24 16</canonical_bands>
                <polymorphic_bands>509 175 164 112 24 16</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>283 164 132 81 77 62 45 34 32 31 24 19 16</canonical_bands>
                <polymorphic_bands>283 164 164 81 77 62 45 34 31 24 19 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCACTTGTATGGGAATTACTG</pcr_primer_p1>
		<pcr_primer_p2>AATGAATCTGAATGCATTTTATC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTCACTTGTATGGGAATTACTGTAGTCGCTGCGAGAAACATTTAACGAAATTACTGTATGCGCCTTTAGTGTCGATTTACGGGGCTTTCTTCTTTTTCTTGTTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTACAAATGAATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATT</canonical_amplicon>
		<polymorphic_amplicon>ATTCACTTGTATGGGAATTACTGTAGTCGCTGCGAGAAACATTTAACGAAATTACTGTATGCGCCTTTAGTGTCGATTTACGGGGCTTTCTTCTTTTTCTTGTTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTACAAATGRATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25903</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>266568</contig_pos>
        <strand>+</strand>
        <context>ACAAAAAGCT[C/T]CGTTCAAGCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTAAAACTACAAATGAATTTTCATACTTTTTTCGATGTTACAAAAAGCT</left_flank>
        <right_flank>CGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTCCGCGTTCTGTTCTGGTACGTGTGCGAAAAAAGGACTGTTCTGAATTGAATCAGTTCGATTTTAGGTCTGTTCGAATTTGAAAACGTTCGAATTCGTCGTACCCCCGAATCCAAAAAATGAAAATATTTTAGGTTACGGTAGCTGTCGTTGTGGTACCTTCCGTCATTGCCCTTTCTCTTCCAGCCACGATTTTTTGTACCAGAAAAGTATCTCAAAGTTTATTTTCCGCTGTTTACAGTTTATTATCGCTACAAATTTTTCGATCCATGTTTTTTCAGATATTCATCTTTTTCAGAACAATTATTCACTTGTATGGGAATTACTGTAGTCGCTGCGAGAAACATTTAACGAAATTACTGTATGCGCCTTTAGTGTCGATTTACGGGGCTTTCTTCTTTTTCTTGTTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTACAAATGAATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATTTTTTCCTGCTTTTTTTCCAGTGGCAGTCACAATCTATCCATTGTAATTGTCGTTGAGCACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCAACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGCTTGGCTCTTCTTTTTTCGCATCTCTATCTCTCTAATGATTGTGTAAATATTCTTCGCAGTATATACACAAGTCTAGTTTGTGATTTCTTTTTTACGCATCGCATTTACTTTTTGAGCCCAAATTTTAAAAAGTTGATTTTCATATAAAATTTTTCTGATAATGGGCTCGAGGTCTTTG</canonical>
            <polymorphic>CTGTCCGCGTTCTGTTCTGGTACGTGTGCGAAAAAAGGACTGTTCTGAATTGAATCAGTTCGATTTTAGGTCTGTTCGAATTTGAAAACGTTCGAATTCGTCGTACCCCCGAATCCAAAAAATGAAAATATTTTAGGTTACGGTAGCTGTCGTTGTGGTACCTTCCGTCATTGCCCTTTCTCTTCCAGCCACGATTTTTTGTACCAGAAAAGTATCTCAAAGTTTATTTTCCGCTGTTTACAGTTTATTATCGCTACAAATTTTTCGATCCATGTTTTTTCAGATATTCATCTTTTTCAGAACAATTATTCACTTGTATGGGAATTACTGTAGTCGCTGCGAGAAACATTTAACGAAATTACTGTATGCGCCTTTAGTGTCGATTTACGGGGCTTTCTTCTTTTTCTTGTTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTACAAATGAATTTTCATACTTTTTTCGATGTTACAAAAAGCTYCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATTTTTTCCTGCTTTTTTTCCAGTGGCAGTCACAATCTATCCATTGTAATTGTCGTTGAGCACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCAACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGCTTGGCTCTTCTTTTTTCGCATCTCTATCTCTCTAATGATTGTGTAAATATTCTTCGCAGTATATACACAAGTCTAGTTTGTGATTTCTTTTTTACGCATCGCATTTACTTTTTGAGCCCAAATTTTAAAAAGTTGATTTTCATATAAAATTTTTCTGATAATGGGCTCGAGGTCTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATTTAACGAAATTACTGTATGC</pcr_primer_p1>
		<pcr_primer_p2>CAATGGATAGATTGTGACTGC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACATTTAACGAAATTACTGTATGCGCCTTTAGTGTCGATTTACGGGGCTTTCTTCTTTTTCTTGTTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTACAAATGAATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATTTTTTCCTGCTTTTTTTCCAGTGGCAGTCACAATCTATCCATTG</canonical_amplicon>
		<polymorphic_amplicon>ACATTTAACGAAATTACTGTATGCGCCTTTAGTGTCGATTTACGGGGCTTTCTTCTTTTTCTTGTTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTACAAATGAATTTTCATACTTTTTTCGATGTTACAAAAAGCTYCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATTTTTTCCTGCTTTTTTTCCAGTGGCAGTCACAATCTATCCATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25904</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>266637</contig_pos>
        <strand>+</strand>
        <context>CTGCTTTTTT[C/T]CCAGTGGCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCATTTTTTTTTGATAAAATGCATTCAGATTCATTTTTTCCTGCTTTTTT</left_flank>
        <right_flank>CCAGTGGCAGTCACAATCTATCCATTGTAATTGTCGTTGAGCACTCAAGC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTGTTCGAATTTGAAAACGTTCGAATTCGTCGTACCCCCGAATCCAAAAAATGAAAATATTTTAGGTTACGGTAGCTGTCGTTGTGGTACCTTCCGTCATTGCCCTTTCTCTTCCAGCCACGATTTTTTGTACCAGAAAAGTATCTCAAAGTTTATTTTCCGCTGTTTACAGTTTATTATCGCTACAAATTTTTCGATCCATGTTTTTTCAGATATTCATCTTTTTCAGAACAATTATTCACTTGTATGGGAATTACTGTAGTCGCTGCGAGAAACATTTAACGAAATTACTGTATGCGCCTTTAGTGTCGATTTACGGGGCTTTCTTCTTTTTCTTGTTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTACAAATGAATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATTTTTTCCTGCTTTTTTTCCAGTGGCAGTCACAATCTATCCATTGTAATTGTCGTTGAGCACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCAACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGCTTGGCTCTTCTTTTTTCGCATCTCTATCTCTCTAATGATTGTGTAAATATTCTTCGCAGTATATACACAAGTCTAGTTTGTGATTTCTTTTTTACGCATCGCATTTACTTTTTGAGCCCAAATTTTAAAAAGTTGATTTTCATATAAAATTTTTCTGATAATGGGCTCGAGGTCTTTGAGCTCTTCGCTTTGCTTGAAACAGCTGTTTTGTCTCCATGTTTCCTCCCACACAATCTCATGTTTTTCA</canonical>
            <polymorphic>GTCTGTTCGAATTTGAAAACGTTCGAATTCGTCGTACCCCCGAATCCAAAAAATGAAAATATTTTAGGTTACGGTAGCTGTCGTTGTGGTACCTTCCGTCATTGCCCTTTCTCTTCCAGCCACGATTTTTTGTACCAGAAAAGTATCTCAAAGTTTATTTTCCGCTGTTTACAGTTTATTATCGCTACAAATTTTTCGATCCATGTTTTTTCAGATATTCATCTTTTTCAGAACAATTATTCACTTGTATGGGAATTACTGTAGTCGCTGCGAGAAACATTTAACGAAATTACTGTATGCGCCTTTAGTGTCGATTTACGGGGCTTTCTTCTTTTTCTTGTTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTACAAATGAATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATTTTTTCCTGCTTTTTTYCCAGTGGCAGTCACAATCTATCCATTGTAATTGTCGTTGAGCACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCAACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGCTTGGCTCTTCTTTTTTCGCATCTCTATCTCTCTAATGATTGTGTAAATATTCTTCGCAGTATATACACAAGTCTAGTTTGTGATTTCTTTTTTACGCATCGCATTTACTTTTTGAGCCCAAATTTTAAAAAGTTGATTTTCATATAAAATTTTTCTGATAATGGGCTCGAGGTCTTTGAGCTCTTCGCTTTGCTTGAAACAGCTGTTTTGTCTCCATGTTTCCTCCCACACAATCTCATGTTTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTTCTTCTTTTTCTTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATAGGGGAGAATGCTTGAGT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GCTTTCTTCTTTTTCTTGTTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTACAAATGAATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATTTTTTCCTGCTTTTTTTCCAGTGGCAGTCACAATCTATCCATTGTAATTGTCGTTGAGCACTCAAGCATTCTCCCCTAT</canonical_amplicon>
		<polymorphic_amplicon>GCTTTCTTCTTTTTCTTGTTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTACAAATGAATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATTTTTTCCTGCTTTTTTYCCAGTGGCAGTCACAATCTATCCATTGTAATTGTCGTTGAGCACTCAAGCATTCTCCCCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25905</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>266666</contig_pos>
        <strand>+</strand>
        <context>TATCCATTGT[C/T]ATTGTCGTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCATTTTTTCCTGCTTTTTTTCCAGTGGCAGTCACAATCTATCCATTGT</left_flank>
        <right_flank>ATTGTCGTTGAGCACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTCGTACCCCCGAATCCAAAAAATGAAAATATTTTAGGTTACGGTAGCTGTCGTTGTGGTACCTTCCGTCATTGCCCTTTCTCTTCCAGCCACGATTTTTTGTACCAGAAAAGTATCTCAAAGTTTATTTTCCGCTGTTTACAGTTTATTATCGCTACAAATTTTTCGATCCATGTTTTTTCAGATATTCATCTTTTTCAGAACAATTATTCACTTGTATGGGAATTACTGTAGTCGCTGCGAGAAACATTTAACGAAATTACTGTATGCGCCTTTAGTGTCGATTTACGGGGCTTTCTTCTTTTTCTTGTTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTACAAATGAATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATTTTTTCCTGCTTTTTTTCCAGTGGCAGTCACAATCTATCCATTGTAATTGTCGTTGAGCACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCAACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGCTTGGCTCTTCTTTTTTCGCATCTCTATCTCTCTAATGATTGTGTAAATATTCTTCGCAGTATATACACAAGTCTAGTTTGTGATTTCTTTTTTACGCATCGCATTTACTTTTTGAGCCCAAATTTTAAAAAGTTGATTTTCATATAAAATTTTTCTGATAATGGGCTCGAGGTCTTTGAGCTCTTCGCTTTGCTTGAAACAGCTGTTTTGTCTCCATGTTTCCTCCCACACAATCTCATGTTTTTCATTTTTCGAGGTCATCTATTTAAATATTAT</canonical>
            <polymorphic>CGTCGTACCCCCGAATCCAAAAAATGAAAATATTTTAGGTTACGGTAGCTGTCGTTGTGGTACCTTCCGTCATTGCCCTTTCTCTTCCAGCCACGATTTTTTGTACCAGAAAAGTATCTCAAAGTTTATTTTCCGCTGTTTACAGTTTATTATCGCTACAAATTTTTCGATCCATGTTTTTTCAGATATTCATCTTTTTCAGAACAATTATTCACTTGTATGGGAATTACTGTAGTCGCTGCGAGAAACATTTAACGAAATTACTGTATGCGCCTTTAGTGTCGATTTACGGGGCTTTCTTCTTTTTCTTGTTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTACAAATGAATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATTTTTTCCTGCTTTTTTTCCAGTGGCAGTCACAATCTATCCATTGTYATTGTCGTTGAGCACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCAACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGCTTGGCTCTTCTTTTTTCGCATCTCTATCTCTCTAATGATTGTGTAAATATTCTTCGCAGTATATACACAAGTCTAGTTTGTGATTTCTTTTTTACGCATCGCATTTACTTTTTGAGCCCAAATTTTAAAAAGTTGATTTTCATATAAAATTTTTCTGATAATGGGCTCGAGGTCTTTGAGCTCTTCGCTTTGCTTGAAACAGCTGTTTTGTCTCCATGTTTCCTCCCACACAATCTCATGTTTTTCATTTTTCGAGGTCATCTATTTAAATATTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>283 160 132 129 77 62 45 34 32 27 19</canonical_bands>
                <polymorphic_bands>283 194 160 129 77 45 34 32 27 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGATAAAATGCATTCAGA</pcr_primer_p1>
		<pcr_primer_p2>GATCACGCAAGGACTTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>211</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGATAAAATGCATTCAGATTCATTTTTTCCTGCTTTTTTTCCAGTGGCAGTCACAATCTATCCATTGTAATTGTCGTTGAGCACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGATAAAATGCATTCAGATTCATTTTTTCCTGCTTTTTTTCCAGTGGCAGTCACAATCTATCCATTGTYATTGTCGTTGAGCACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25906</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>266717</contig_pos>
        <strand></strand>
        <context>TTCCTTCCCT[T/C]CTTTTACATC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTGTCGTTGAGCACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCT</left_flank>
        <right_flank>CTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCCCTTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTTGTGGTACCTTCCGTCATTGCCCTTTCTCTTCCAGCCACGATTTTTTGTACCAGAAAAGTATCTCAAAGTTTATTTTCCGCTGTTTACAGTTTATTATCGCTACAAATTTTTCGATCCATGTTTTTTCAGATATTCATCTTTTTCAGAACAATTATTCACTTGTATGGGAATTACTGTAGTCGCTGCGAGAAACATTTAACGAAATTACTGTATGCGCCTTTAGTGTCGATTTACGGGGCTTTCTTCTTTTTCTTGTTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTACAAATGAATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATTTTTTCCTGCTTTTTTTCCAGTGGCAGTCACAATCTATCCATTGTAATTGTCGTTGAGCACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCAACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGCTTGGCTCTTCTTTTTTCGCATCTCTATCTCTCTAATGATTGTGTAAATATTCTTCGCAGTATATACACAAGTCTAGTTTGTGATTTCTTTTTTACGCATCGCATTTACTTTTTGAGCCCAAATTTTAAAAAGTTGATTTTCATATAAAATTTTTCTGATAATGGGCTCGAGGTCTTTGAGCTCTTCGCTTTGCTTGAAACAGCTGTTTTGTCTCCATGTTTCCTCCCACACAATCTCATGTTTTTCATTTTTCGAGGTCATCTATTTAAATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGAGTATTTTTTGCAGTCTGAATACG</canonical>
            <polymorphic>TCGTTGTGGTACCTTCCGTCATTGCCCTTTCTCTTCCAGCCACGATTTTTTGTACCAGAAAAGTATCTCAAAGTTTATTTTCCGCTGTTTACAGTTTATTATCGCTACAAATTTTTCGATCCATGTTTTTTCAGATATTCATCTTTTTCAGAACAATTATTCACTTGTATGGGAATTACTGTAGTCGCTGCGAGAAACATTTAACGAAATTACTGTATGCGCCTTTAGTGTCGATTTACGGGGCTTTCTTCTTTTTCTTGTTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTACAAATGAATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATTTTTTCCTGCTTTTTTTCCAGTGGCAGTCACAATCTATCCATTGTAATTGTCGTTGAGCACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTYCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCAACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGCTTGGCTCTTCTTTTTTCGCATCTCTATCTCTCTAATGATTGTGTAAATATTCTTCGCAGTATATACACAAGTCTAGTTTGTGATTTCTTTTTTACGCATCGCATTTACTTTTTGAGCCCAAATTTTAAAAAGTTGATTTTCATATAAAATTTTTCTGATAATGGGCTCGAGGTCTTTGAGCTCTTCGCTTTGCTTGAAACAGCTGTTTTGTCTCCATGTTTCCTCCCACACAATCTCATGTTTTTCATTTTTCGAGGTCATCTATTTAAATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGAGTATTTTTTGCAGTCTGAATACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGCAGTCACAATCTATCC</pcr_primer_p1>
		<pcr_primer_p2>GCGGAAGAAGGAGATAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGGCAGTCACAATCTATCCATTGTAATTGTCGTTGAGCACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCAACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGC</canonical_amplicon>
		<polymorphic_amplicon>GTGGCAGTCACAATCTATCCATTGTAATTGTCGTTGAGCACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTYCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCAACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25907</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>266748</contig_pos>
        <strand></strand>
        <context>TTAGGCTTTC[A/C]TTTTCCTTTM</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTC</left_flank>
        <right_flank>TTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCCAGCCACGATTTTTTGTACCAGAAAAGTATCTCAAAGTTTATTTTCCGCTGTTTACAGTTTATTATCGCTACAAATTTTTCGATCCATGTTTTTTCAGATATTCATCTTTTTCAGAACAATTATTCACTTGTATGGGAATTACTGTAGTCGCTGCGAGAAACATTTAACGAAATTACTGTATGCGCCTTTAGTGTCGATTTACGGGGCTTTCTTCTTTTTCTTGTTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTACAAATGAATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATTTTTTCCTGCTTTTTTTCCAGTGGCAGTCACAATCTATCCATTGTAATTGTCGTTGAGCACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCAACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGCTTGGCTCTTCTTTTTTCGCATCTCTATCTCTCTAATGATTGTGTAAATATTCTTCGCAGTATATACACAAGTCTAGTTTGTGATTTCTTTTTTACGCATCGCATTTACTTTTTGAGCCCAAATTTTAAAAAGTTGATTTTCATATAAAATTTTTCTGATAATGGGCTCGAGGTCTTTGAGCTCTTCGCTTTGCTTGAAACAGCTGTTTTGTCTCCATGTTTCCTCCCACACAATCTCATGTTTTTCATTTTTCGAGGTCATCTATTTAAATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGAGTATTTTTTGCAGTCTGAATACGTTAGCGATATCGAAGCGGAGAGCCTAAATAG</canonical>
            <polymorphic>TCTTCCAGCCACGATTTTTTGTACCAGAAAAGTATCTCAAAGTTTATTTTCCGCTGTTTACAGTTTATTATCGCTACAAATTTTTCGATCCATGTTTTTTCAGATATTCATCTTTTTCAGAACAATTATTCACTTGTATGGGAATTACTGTAGTCGCTGCGAGAAACATTTAACGAAATTACTGTATGCGCCTTTAGTGTCGATTTACGGGGCTTTCTTCTTTTTCTTGTTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTACAAATGAATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATTTTTTCCTGCTTTTTTTCCAGTGGCAGTCACAATCTATCCATTGTAATTGTCGTTGAGCACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCMTTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCAACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGCTTGGCTCTTCTTTTTTCGCATCTCTATCTCTCTAATGATTGTGTAAATATTCTTCGCAGTATATACACAAGTCTAGTTTGTGATTTCTTTTTTACGCATCGCATTTACTTTTTGAGCCCAAATTTTAAAAAGTTGATTTTCATATAAAATTTTTCTGATAATGGGCTCGAGGTCTTTGAGCTCTTCGCTTTGCTTGAAACAGCTGTTTTGTCTCCATGTTTCCTCCCACACAATCTCATGTTTTTCATTTTTCGAGGTCATCTATTTAAATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGAGTATTTTTTGCAGTCTGAATACGTTAGCGATATCGAAGCGGAGAGCCTAAATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCAAGCATTCTCCCCTAT</pcr_primer_p1>
		<pcr_primer_p2>TTAGAGAGATAGAGATGCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCAACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGCTTGGCTCTTCTTTTTTCGCATCTCTATCTCTCTAA</canonical_amplicon>
		<polymorphic_amplicon>ACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCMTTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCAACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGCTTGGCTCTTCTTTTTTCGCATCTCTATCTCTCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25908</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>266758</contig_pos>
        <strand>+</strand>
        <context>MTTTTCCTTT[A/C]CTCYCTTCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTT</left_flank>
        <right_flank>CTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGATTTTTTGTACCAGAAAAGTATCTCAAAGTTTATTTTCCGCTGTTTACAGTTTATTATCGCTACAAATTTTTCGATCCATGTTTTTTCAGATATTCATCTTTTTCAGAACAATTATTCACTTGTATGGGAATTACTGTAGTCGCTGCGAGAAACATTTAACGAAATTACTGTATGCGCCTTTAGTGTCGATTTACGGGGCTTTCTTCTTTTTCTTGTTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTACAAATGAATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATTTTTTCCTGCTTTTTTTCCAGTGGCAGTCACAATCTATCCATTGTAATTGTCGTTGAGCACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCAACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGCTTGGCTCTTCTTTTTTCGCATCTCTATCTCTCTAATGATTGTGTAAATATTCTTCGCAGTATATACACAAGTCTAGTTTGTGATTTCTTTTTTACGCATCGCATTTACTTTTTGAGCCCAAATTTTAAAAAGTTGATTTTCATATAAAATTTTTCTGATAATGGGCTCGAGGTCTTTGAGCTCTTCGCTTTGCTTGAAACAGCTGTTTTGTCTCCATGTTTCCTCCCACACAATCTCATGTTTTTCATTTTTCGAGGTCATCTATTTAAATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGAGTATTTTTTGCAGTCTGAATACGTTAGCGATATCGAAGCGGAGAGCCTAAATAGCACACATAAG</canonical>
            <polymorphic>ACGATTTTTTGTACCAGAAAAGTATCTCAAAGTTTATTTTCCGCTGTTTACAGTTTATTATCGCTACAAATTTTTCGATCCATGTTTTTTCAGATATTCATCTTTTTCAGAACAATTATTCACTTGTATGGGAATTACTGTAGTCGCTGCGAGAAACATTTAACGAAATTACTGTATGCGCCTTTAGTGTCGATTTACGGGGCTTTCTTCTTTTTCTTGTTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTACAAATGAATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATTTTTTCCTGCTTTTTTTCCAGTGGCAGTCACAATCTATCCATTGTAATTGTCGTTGAGCACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTMCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCAACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGCTTGGCTCTTCTTTTTTCGCATCTCTATCTCTCTAATGATTGTGTAAATATTCTTCGCAGTATATACACAAGTCTAGTTTGTGATTTCTTTTTTACGCATCGCATTTACTTTTTGAGCCCAAATTTTAAAAAGTTGATTTTCATATAAAATTTTTCTGATAATGGGCTCGAGGTCTTTGAGCTCTTCGCTTTGCTTGAAACAGCTGTTTTGTCTCCATGTTTCCTCCCACACAATCTCATGTTTTTCATTTTTCGAGGTCATCTATTTAAATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGAGTATTTTTTGCAGTCTGAATACGTTAGCGATATCGAAGCGGAGAGCCTAAATAGCACACATAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCAAGCATTCTCCCCTAT</pcr_primer_p1>
		<pcr_primer_p2>TTAGAGAGATAGAGATGCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCAACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGCTTGGCTCTTCTTTTTTCGCATCTCTATCTCTCTAA</canonical_amplicon>
		<polymorphic_amplicon>ACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTMCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCAACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGCTTGGCTCTTCTTTTTTCGCATCTCTATCTCTCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25909</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>266762</contig_pos>
        <strand>+</strand>
        <context>TCCTTTMCTC[C/T]CTTCACCGAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTC</left_flank>
        <right_flank>CTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTGTACCAGAAAAGTATCTCAAAGTTTATTTTCCGCTGTTTACAGTTTATTATCGCTACAAATTTTTCGATCCATGTTTTTTCAGATATTCATCTTTTTCAGAACAATTATTCACTTGTATGGGAATTACTGTAGTCGCTGCGAGAAACATTTAACGAAATTACTGTATGCGCCTTTAGTGTCGATTTACGGGGCTTTCTTCTTTTTCTTGTTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTACAAATGAATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATTTTTTCCTGCTTTTTTTCCAGTGGCAGTCACAATCTATCCATTGTAATTGTCGTTGAGCACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCAACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGCTTGGCTCTTCTTTTTTCGCATCTCTATCTCTCTAATGATTGTGTAAATATTCTTCGCAGTATATACACAAGTCTAGTTTGTGATTTCTTTTTTACGCATCGCATTTACTTTTTGAGCCCAAATTTTAAAAAGTTGATTTTCATATAAAATTTTTCTGATAATGGGCTCGAGGTCTTTGAGCTCTTCGCTTTGCTTGAAACAGCTGTTTTGTCTCCATGTTTCCTCCCACACAATCTCATGTTTTTCATTTTTCGAGGTCATCTATTTAAATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGAGTATTTTTTGCAGTCTGAATACGTTAGCGATATCGAAGCGGAGAGCCTAAATAGCACACATAAGGTGG</canonical>
            <polymorphic>TTTTTTGTACCAGAAAAGTATCTCAAAGTTTATTTTCCGCTGTTTACAGTTTATTATCGCTACAAATTTTTCGATCCATGTTTTTTCAGATATTCATCTTTTTCAGAACAATTATTCACTTGTATGGGAATTACTGTAGTCGCTGCGAGAAACATTTAACGAAATTACTGTATGCGCCTTTAGTGTCGATTTACGGGGCTTTCTTCTTTTTCTTGTTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTACAAATGAATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATTTTTTCCTGCTTTTTTTCCAGTGGCAGTCACAATCTATCCATTGTAATTGTCGTTGAGCACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCYCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCAACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGCTTGGCTCTTCTTTTTTCGCATCTCTATCTCTCTAATGATTGTGTAAATATTCTTCGCAGTATATACACAAGTCTAGTTTGTGATTTCTTTTTTACGCATCGCATTTACTTTTTGAGCCCAAATTTTAAAAAGTTGATTTTCATATAAAATTTTTCTGATAATGGGCTCGAGGTCTTTGAGCTCTTCGCTTTGCTTGAAACAGCTGTTTTGTCTCCATGTTTCCTCCCACACAATCTCATGTTTTTCATTTTTCGAGGTCATCTATTTAAATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGAGTATTTTTTGCAGTCTGAATACGTTAGCGATATCGAAGCGGAGAGCCTAAATAGCACACATAAGGTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCAAGCATTCTCCCCTAT</pcr_primer_p1>
		<pcr_primer_p2>TTAGAGAGATAGAGATGCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCAACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGCTTGGCTCTTCTTTTTTCGCATCTCTATCTCTCTAA</canonical_amplicon>
		<polymorphic_amplicon>ACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCYCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCAACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGCTTGGCTCTTCTTTTTTCGCATCTCTATCTCTCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25910</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>266825</contig_pos>
        <strand>+</strand>
        <context>GGCAACTAGC[A/G]ACTTCGAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGC</left_flank>
        <right_flank>ACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTTTCGATCCATGTTTTTTCAGATATTCATCTTTTTCAGAACAATTATTCACTTGTATGGGAATTACTGTAGTCGCTGCGAGAAACATTTAACGAAATTACTGTATGCGCCTTTAGTGTCGATTTACGGGGCTTTCTTCTTTTTCTTGTTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTACAAATGAATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATTTTTTCCTGCTTTTTTTCCAGTGGCAGTCACAATCTATCCATTGTAATTGTCGTTGAGCACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCAACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGCTTGGCTCTTCTTTTTTCGCATCTCTATCTCTCTAATGATTGTGTAAATATTCTTCGCAGTATATACACAAGTCTAGTTTGTGATTTCTTTTTTACGCATCGCATTTACTTTTTGAGCCCAAATTTTAAAAAGTTGATTTTCATATAAAATTTTTCTGATAATGGGCTCGAGGTCTTTGAGCTCTTCGCTTTGCTTGAAACAGCTGTTTTGTCTCCATGTTTCCTCCCACACAATCTCATGTTTTTCATTTTTCGAGGTCATCTATTTAAATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGAGTATTTTTTGCAGTCTGAATACGTTAGCGATATCGAAGCGGAGAGCCTAAATAGCACACATAAGGTGGATACACAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTCAGACAAGGATAATAAAACAT</canonical>
            <polymorphic>AAATTTTTCGATCCATGTTTTTTCAGATATTCATCTTTTTCAGAACAATTATTCACTTGTATGGGAATTACTGTAGTCGCTGCGAGAAACATTTAACGAAATTACTGTATGCGCCTTTAGTGTCGATTTACGGGGCTTTCTTCTTTTTCTTGTTTTTTTTCTTTTCTTTCAAGCTAAATTCATAAAACTCGATTTAAAACTACAAATGAATTTTCATACTTTTTTCGATGTTACAAAAAGCTTCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATTTTTTCCTGCTTTTTTTCCAGTGGCAGTCACAATCTATCCATTGTAATTGTCGTTGAGCACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCRACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGCTTGGCTCTTCTTTTTTCGCATCTCTATCTCTCTAATGATTGTGTAAATATTCTTCGCAGTATATACACAAGTCTAGTTTGTGATTTCTTTTTTACGCATCGCATTTACTTTTTGAGCCCAAATTTTAAAAAGTTGATTTTCATATAAAATTTTTCTGATAATGGGCTCGAGGTCTTTGAGCTCTTCGCTTTGCTTGAAACAGCTGTTTTGTCTCCATGTTTCCTCCCACACAATCTCATGTTTTTCATTTTTCGAGGTCATCTATTTAAATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGAGTATTTTTTGCAGTCTGAATACGTTAGCGATATCGAAGCGGAGAGCCTAAATAGCACACATAAGGTGGATACACAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTCAGACAAGGATAATAAAACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCAAGCATTCTCCCCTAT</pcr_primer_p1>
		<pcr_primer_p2>TTAGAGAGATAGAGATGCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCAACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGCTTGGCTCTTCTTTTTTCGCATCTCTATCTCTCTAA</canonical_amplicon>
		<polymorphic_amplicon>ACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCRACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGCTTGGCTCTTCTTTTTTCGCATCTCTATCTCTCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25911</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>267058</contig_pos>
        <strand>+</strand>
        <context>ATAATGGGCT[C/T]GAGGTCTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAAATTTTAAAAAGTTGATTTTCATATAAAATTTTTCTGATAATGGGCT</left_flank>
        <right_flank>GAGGTCTTTGAGCTCTTCGCTTTGCTTGAAACAGCTGTTTTGTCTCCATG</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAAAGCTTCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATTTTTTCCTGCTTTTTTTCCAGTGGCAGTCACAATCTATCCATTGTAATTGTCGTTGAGCACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCAACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGCTTGGCTCTTCTTTTTTCGCATCTCTATCTCTCTAATGATTGTGTAAATATTCTTCGCAGTATATACACAAGTCTAGTTTGTGATTTCTTTTTTACGCATCGCATTTACTTTTTGAGCCCAAATTTTAAAAAGTTGATTTTCATATAAAATTTTTCTGATAATGGGCTCGAGGTCTTTGAGCTCTTCGCTTTGCTTGAAACAGCTGTTTTGTCTCCATGTTTCCTCCCACACAATCTCATGTTTTTCATTTTTCGAGGTCATCTATTTAAATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGAGTATTTTTTGCAGTCTGAATACGTTAGCGATATCGAAGCGGAGAGCCTAAATAGCACACATAAGGTGGATACACAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTCAGACAAGGATAATAAAACATTTTATGTTTACAAAATCGCTTCTTGGCACGAGGTCTTATCGCTGTTGAAAATTAATATTGGAAGAATAAAATCAACACTTCGAAGTTCGAATTGAATTTTTTTTTAAAATGTGATTTCTTTAGCTTTTTGGAAATAATCCAATAGAGCCGTTCGGAATGTCAAAAATTCCGAGTTTCAAAAATAAATTTTGGAAGATTCCGATTGTTTAAATTTTGGAATTTTATTAAAACTC</canonical>
            <polymorphic>CAAAAAGCTTCGTTCAAGCGTTTGTCCTGCATTTTTTTTTGATAAAATGCATTCAGATTCATTTTTTCCTGCTTTTTTTCCAGTGGCAGTCACAATCTATCCATTGTAATTGTCGTTGAGCACTCAAGCATTCTCCCCTATTTCCCCTTTCCTTCCCTTCTTTTACATCAATTTTTTCATTAGGCTTTCATTTTCCTTTTCTCCCTTCACCGACTTTTAGTCAGCCCTAAAAGTCCTTGCGTGATCCATTCCTATTGGCAACTAGCAACTTCGAAGAGCTTCTCCGTTTTTTCCTGCCGTGTGCTCCTCACACTTCTATCTCCTTCTTCCGCTTGGCTCTTCTTTTTTCGCATCTCTATCTCTCTAATGATTGTGTAAATATTCTTCGCAGTATATACACAAGTCTAGTTTGTGATTTCTTTTTTACGCATCGCATTTACTTTTTGAGCCCAAATTTTAAAAAGTTGATTTTCATATAAAATTTTTCTGATAATGGGCTYGAGGTCTTTGAGCTCTTCGCTTTGCTTGAAACAGCTGTTTTGTCTCCATGTTTCCTCCCACACAATCTCATGTTTTTCATTTTTCGAGGTCATCTATTTAAATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGAGTATTTTTTGCAGTCTGAATACGTTAGCGATATCGAAGCGGAGAGCCTAAATAGCACACATAAGGTGGATACACAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTCAGACAAGGATAATAAAACATTTTATGTTTACAAAATCGCTTCTTGGCACGAGGTCTTATCGCTGTTGAAAATTAATATTGGAAGAATAAAATCAACACTTCGAAGTTCGAATTGAATTTTTTTTTAAAATGTGATTTCTTTAGCTTTTTGGAAATAATCCAATAGAGCCGTTCGGAATGTCAAAAATTCCGAGTTTCAAAAATAAATTTTGGAAGATTCCGATTGTTTAAATTTTGGAATTTTATTAAAACTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>486 450 49 15</canonical_bands>
                <polymorphic_bands>486 450 64</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>486 183 145 122 49 15</canonical_bands>
                <polymorphic_bands>486 183 145 122 64</polymorphic_bands>
            </assay>
            <assay>
                <site>CTCGAG</site>
                <isoschizomers>
                    <enzyme>BssHI</enzyme>
                    <enzyme>PaeR7I</enzyme>
                    <enzyme>SciI</enzyme>
                    <enzyme>Sfr274I</enzyme>
                    <enzyme>SlaI</enzyme>
                    <enzyme>TliI</enzyme>
                    <enzyme>XhoI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>272 228 178 145 85 85 7</canonical_bands>
                <polymorphic_bands>313 272 178 145 85 7</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>502 375 123</canonical_bands>
                <polymorphic_bands>877 123</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGCATCTCTATCTCTCTAATGAT</pcr_primer_p1>
		<pcr_primer_p2>TAAATAGATGACCTCGAAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGCATCTCTATCTCTCTAATGATTGTGTAAATATTCTTCGCAGTATATACACAAGTCTAGTTTGTGATTTCTTTTTTACGCATCGCATTTACTTTTTGAGCCCAAATTTTAAAAAGTTGATTTTCATATAAAATTTTTCTGATAATGGGCTCGAGGTCTTTGAGCTCTTCGCTTTGCTTGAAACAGCTGTTTTGTCTCCATGTTTCCTCCCACACAATCTCATGTTTTTCATTTTTCGAGGTCATCTATTTA</canonical_amplicon>
		<polymorphic_amplicon>CGCATCTCTATCTCTCTAATGATTGTGTAAATATTCTTCGCAGTATATACACAAGTCTAGTTTGTGATTTCTTTTTTACGCATCGCATTTACTTTTTGAGCCCAAATTTTAAAAAGTTGATTTTCATATAAAATTTTTCTGATAATGGGCTYGAGGTCTTTGAGCTCTTCGCTTTGCTTGAAACAGCTGTTTTGTCTCCATGTTTCCTCCCACACAATCTCATGTTTTTCATTTTTCGAGGTCATCTATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25912</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>270175</contig_pos>
        <strand>+</strand>
        <context>TCAAACAAAT[C/T]ATGACACTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCCACAGCTTCATTCGAGTTCCAGACGCTTCCAAACTCATCAAACAAAT</left_flank>
        <right_flank>ATGACACTTGAGCCAAACGAACAATTGGATATTTTCAATTTGTTAAAGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCAGAACCTTTTTGCATTTTTATCTTTTTTGATTTCAGCTTTCTCTTGCTCTCTACAACCGTCCATTTTTCGTGTGCCCGGTCCAACACTATCAAACTGATAGCTCCAACTGCACGATCCCATTGGCATTCCAACTTCAAGACTACCCAGTTCCACGTCCATTCTCCTTCATCTACAAAATTCTCCGCAAAGAACCAGCTGTCCAGCTGTGTCCATTCGTTTTTCACAGTATTGCGCTGAGCTTATTCGCCTCGATTTTAGGACCGTTCGGTGGATTCTTTGCTAGTGGATTCAAGAGAGCTTTCAAGATTAAGGTAGGAAACAGAAAACTAGAATTCGAAAAAACAATTTTCATTTTAGGACTTTGGAGATGTGATCCCAGGACATGGAGGATTGATGGATCGATTTGATTGCCAACTTCTGATGGGAACATTCGTTATGGTTTACATCCACAGCTTCATTCGAGTTCCAGACGCTTCCAAACTCATCAAACAAATCATGACACTTGAGCCAAACGAACAATTGGATATTTTCAATTTGTTAAAGTCCGAGCTATCCAAGACTGGATTACTGTAATCTTGATGTACCTGCTGCTGCTCCCCACTCATTCCATGTGAATCTCAATGGAATCGCTCTCTAGTCATTCCGATTCCTCTACTCCCTTTTCCCTTCGTTCTGTTAATATATGCTTTAACTTGTATCTCTATTTTACTTTATTACTATATACTTTCCCAGTCTCATTTCTCCCGTATTTCTCCCATTTTCCCCAGGCTTCTGTAATGGTTGTGAGCTCTCAAAAACGCACATAATTTTGTAGTTTTAGTGCTTCTGTTAGCTGACTGTGTAACTAATAAAACAATTTTGATTGTTATTTTCCCCTAGAACATTCGAACATGTAAATAATGACATCTGTAATATTATTTTTGGTGATTTATTACAGCGAAACAGTAAGGTTTAAAATGTTTAATTTTCTAGAATCTATAAATGTCTGAAATTGA</canonical>
            <polymorphic>TTTCAGAACCTTTTTGCATTTTTATCTTTTTTGATTTCAGCTTTCTCTTGCTCTCTACAACCGTCCATTTTTCGTGTGCCCGGTCCAACACTATCAAACTGATAGCTCCAACTGCACGATCCCATTGGCATTCCAACTTCAAGACTACCCAGTTCCACGTCCATTCTCCTTCATCTACAAAATTCTCCGCAAAGAACCAGCTGTCCAGCTGTGTCCATTCGTTTTTCACAGTATTGCGCTGAGCTTATTCGCCTCGATTTTAGGACCGTTCGGTGGATTCTTTGCTAGTGGATTCAAGAGAGCTTTCAAGATTAAGGTAGGAAACAGAAAACTAGAATTCGAAAAAACAATTTTCATTTTAGGACTTTGGAGATGTGATCCCAGGACATGGAGGATTGATGGATCGATTTGATTGCCAACTTCTGATGGGAACATTCGTTATGGTTTACATCCACAGCTTCATTCGAGTTCCAGACGCTTCCAAACTCATCAAACAAATYATGACACTTGAGCCAAACGAACAATTGGATATTTTCAATTTGTTAAAGTCCGAGCTATCCAAGACTGGATTACTGTAATCTTGATGTACCTGCTGCTGCTCCCCACTCATTCCATGTGAATCTCAATGGAATCGCTCTCTAGTCATTCCGATTCCTCTACTCCCTTTTCCCTTCGTTCTGTTAATATATGCTTTAACTTGTATCTCTATTTTACTTTATTACTATATACTTTCCCAGTCTCATTTCTCCCGTATTTCTCCCATTTTCCCCAGGCTTCTGTAATGGTTGTGAGCTCTCAAAAACGCACATAATTTTGTAGTTTTAGTGCTTCTGTTAGCTGACTGTGTAACTAATAAAACAATTTTGATTGTTATTTTCCCCTAGAACATTCGAACATGTAAATAATGACATCTGTAATATTATTTTTGGTGATTTATTACAGCGAAACAGTAAGGTTTAAAATGTTTAATTTTCTAGAATCTATAAATGTCTGAAATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>387 282 113 113 105</canonical_bands>
                <polymorphic_bands>387 282 226 105</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>394 164 155 140 80 29 26 12</canonical_bands>
                <polymorphic_bands>394 164 155 140 109 26 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAATTTTCATTTTAGGACTTTG</pcr_primer_p1>
		<pcr_primer_p2>AGCAGGTACATCAAGATTACAGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACAATTTTCATTTTAGGACTTTGGAGATGTGATCCCAGGACATGGAGGATTGATGGATCGATTTGATTGCCAACTTCTGATGGGAACATTCGTTATGGTTTACATCCACAGCTTCATTCGAGTTCCAGACGCTTCCAAACTCATCAAACAAATCATGACACTTGAGCCAAACGAACAATTGGATATTTTCAATTTGTTAAAGTCCGAGCTATCCAAGACTGGATTACTGTAATCTTGATGTACCTGCT</canonical_amplicon>
		<polymorphic_amplicon>ACAATTTTCATTTTAGGACTTTGGAGATGTGATCCCAGGACATGGAGGATTGATGGATCGATTTGATTGCCAACTTCTGATGGGAACATTCGTTATGGTTTACATCCACAGCTTCATTCGAGTTCCAGACGCTTCCAAACTCATCAAACAAATYATGACACTTGAGCCAAACGAACAATTGGATATTTTCAATTTGTTAAAGTCCGAGCTATCCAAGACTGGATTACTGTAATCTTGATGTACCTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25913</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>309058</contig_pos>
        <strand></strand>
        <context>ttgtcaacgg[G/A]taattttttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAGTCAATCTATCTCGCTTCCTGTCAAAGGTATAAAAATTTTGTCAACGG</left_flank>
        <right_flank>TAATTTTTTTTATCATAAGATAAACAATATTTTATCAGTCGACAAAATTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAACCTCATTCTCAATTGAACAGAATTATTGGCTTGTAAAGTTTAGAACCGCCATGAGGATCGGAGGTTGATCTCCGATTTTCCAAAATATCTATAGAAAAAGAACCCCTTTTTTAAAAGAATTGGCCCAAGAAATTTGTACCACTGATTCTTGAATCTAGAATTTCCCTAAAACGAGTTCGAAAACAGCACCATATCATCCCACTAATTTCGTCACACTTCCTCTGATTCACTTCCGAACCGTCGCATTAAATTAGATTTCATGAGCTGCAACTAAATGGATTCTAATCTCATCATGTACATCTTAGAACTTTACTTTTCCGGTCTAAAGATATTTTAAATTCAAGCAACGTTTAATTTACTAATATAACGATTTCTTGAACTTTGAAAAACTTCTTGTATCTGAATTAATATACCGTAACATCTATAATAGAAGGGCCTAAACTTTGAGTCAATCTATCTCGCTTCCTGTCAAAGGTATAAAAATTTTGTCAACGGGTAATTTTTTTTATCATAAGATAAACAATATTTTATCAGTCGACAAAATTTTAATATCTTTCACAGAAATCGAGATAGTGGAGCTAAAAATTGACGGTTTGTGTGGCACTCTATCAGAGCGTTTACGGTAGTTCAGCTATCATTAAAAAACCGAACTAGTCAGATCCAATTAGGACAAGTATTCGATATCACAAAAGTTATAATTAAACAAGTCCTAATCATCAAAAATTATCAATCAAAATTATTAAGTAATCCTCTTTGTCAAGTTATGTTACAATGATCCTCCAATCCTTATCAAAACCAGTGAGGAACGTCCTTATTCTCCACCAACTATTTCCTCGAGAATCAAACATCCCGATGACATAATCCACTCATCCTATAACATTTTCTTCTGAATCCTCAATTTGCTCCATTTCCTGCCACCCCGGTAATCGACCACCGTCGTCGTCGTCCGGATATTAATACCCGCGCAAAGGAATTTCCTGTCATCCCCTAAGGAAT</canonical>
            <polymorphic>GTAACCTCATTCTCAATTGAACAGAATTATTGGCTTGTAAAGTTTAGAACCGCCATGAGGATCGGAGGTTGATCTCCGATTTTCCAAAATATCTATAGAAAAAGAACCCCTTTTTTAAAAGAATTGGCCCAAGAAATTTGTACCACTGATTCTTGAATCTAGAATTTCCCTAAAACGAGTTCGAAAACAGCACCATATCATCCCACTAATTTCGTCACACTTCCTCTGATTCACTTCCGAACCGTCGCATTAAATTAGATTTCATGAGCTGCAACTAAATGGATTCTAATCTCATCATGTACATCTTAGAACTTTACTTTTCCGGTCTAAAGATATTTTAAATTCAAGCAACGTTTAATTTACTAATATAACGATTTCTTGAACTTTGAAAAACTTCTTGTATCTGAATTAATATACCGTAACATCTATAATAGAAGGGCCTAAACTTTGAGTCAATCTATCTCGCTTCCTGTCAAAGGTATAAAAATTTTGTCAACGGRTAATTTTTTTTATCATAAGATAAACAATATTTTATCAGTCGACAAAATTTTAATATCTTTCACAGAAATCGAGATAGTGGAGCTAAAAATTGACGGTTTGTGTGGCACTCTATCAGAGCGTTTACGGTAGTTCAGCTATCATTAAAAAACCGAACTAGTCAGATCCAATTAGGACAAGTATTCGATATCACAAAAGTTATAATTAAACAAGTCCTAATCATCAAAAATTATCAATCAAAATTATTAAGTAATCCTCTTTGTCAAGTTATGTTACAATGATCCTCCAATCCTTATCAAAACCAGTGAGGAACGTCCTTATTCTCCACCAACTATTTCCTCGAGAATCAAACATCCCGATGACATAATCCACTCATCCTATAACATTTTCTTCTGAATCCTCAATTTGCTCCATTTCCTGCCACCCCGGTAATCGACCACCGTCGTCGTCGTCCGGATATTAATACCCGCGCAAAGGAATTTCCTGTCATCCCCTAAGGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATAACGATTTCTTGAACTTTGA</pcr_primer_p1>
		<pcr_primer_p2>GGATCTGACTAGTTCGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>302</pcr_amplicon_size>
		<canonical_amplicon>AATATAACGATTTCTTGAACTTTGAAAAACTTCTTGTATCTGAATTAATATACCGTAACATCTATAATAGAAGGGCCTAAACTTTGAGTCAATCTATCTCGCTTCCTGTCAAAGGTATAAAAATTTTGTCAACGGGTAATTTTTTTTATCATAAGATAAACAATATTTTATCAGTCGACAAAATTTTAATATCTTTCACAGAAATCGAGATAGTGGAGCTAAAAATTGACGGTTTGTGTGGCACTCTATCAGAGCGTTTACGGTAGTTCAGCTATCATTAAAAAACCGAACTAGTCAGATCC</canonical_amplicon>
		<polymorphic_amplicon>AATATAACGATTTCTTGAACTTTGAAAAACTTCTTGTATCTGAATTAATATACCGTAACATCTATAATAGAAGGGCCTAAACTTTGAGTCAATCTATCTCGCTTCCTGTCAAAGGTATAAAAATTTTGTCAACGGRTAATTTTTTTTATCATAAGATAAACAATATTTTATCAGTCGACAAAATTTTAATATCTTTCACAGAAATCGAGATAGTGGAGCTAAAAATTGACGGTTTGTGTGGCACTCTATCAGAGCGTTTACGGTAGTTCAGCTATCATTAAAAAACCGAACTAGTCAGATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25914</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>311300</contig_pos>
        <strand>+</strand>
        <context>AATTTGGACW[A/T]AAGATTCAAR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGTTGTGTTCTTTTTTCTTGAGAAGACGTAACGATAAAAAATTTGGACT</left_flank>
        <right_flank>AAGATTCAAGAATTTTCTGGAAGTAAATTTCAAAATTTGTTATTTTCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCATGTCAAAAGGAAGTCAATGTTCTTATTTTTCCTATCTTCTGAAGTGATTTCTTGTCAATCATATCCATATGTTTCTTCGATGTGCAATTCCAACCACATTCATCAATTTTGAACCATGAAAAGTGACAGATGGGAATGAATGGTTGGGGGTAGTACATCAATATAATGGGACAAAAAAGACAAAGTGCAGCTGTGGAATCTGCAGAAGACTCCGCCCACTTTTGTGTGCTGCCTGTCACTTCTACCAGCTGGATTGTCTGCAAACTTTTTAGAACATTTTTTTCAGTTTACTGTAGAATTAGTGTGACCTTTAGACAAGGTTTTATGTCCCAAGAGACTGTACTTTTAATTGGAGTTGTTTATTTCTTCTCGAGAGGTTCAGACTTAGACATCATTACACTTTAAGAACAGAAACAAGGCTAACTAATCGGTTTAGTTTACAGTATGTTGTGTTCTTTTTTCTTGAGAAGACGTAACGATAAAAAATTTGGACTAAAGATTCAAGAATTTTCTGGAAGTAAATTTCAAAATTTGTTATTTTCAATATAAAATACCAAAACCTTGAGCTCCATTATTTCGATTATTGTGAGAGATATCAAAATTTCGTTAACTAATAAAACATTGCTGATATTATGATAAACGTTTTGTCAGTTGACAACTTGCTGATATCTTTTACATACTTGCAAAATTTGGGCCCTGTCCAGCCCGGCCCGGCGGGCCCGGGTCCTCCAAATTTAAAAAAAATTGAAATTTCAGAAATTCTTTCAATTTTTTTGTGAAAAAAACTATTCTGAAAAAAGCCCGGCCCGGCCCGTTGCAAGTATGATCTTTTACAGGAATCGAGATTAAGCTCAAAGTTGGCGGTTTGGGCGGCAGTTTGATATCAATTACCTCCGTTTTTTTGTTTATCATTCTTGCATACAACTTTGGCATTTTTTTGCAAGAAAACCTAAAGTTATTCCAGAATGTTTTTGTAAACAATATCACATTTTGTA</canonical>
            <polymorphic>AATCATGTCAAAAGGAAGTCAATGTTCTTATTTTTCCTATCTTCTGAAGTGATTTCTTGTCAATCATATCCATATGTTTCTTCGATGTGCAATTCCAACCACATTCATCAATTTTGAACCATGAAAAGTGACAGATGGGAATGAATGGTTGGGGGTAGTACATCAATATAATGGGACAAAAAAGACAAAGTGCAGCTGTGGAATCTGCAGAAGACTCCGCCCACTTTTGTGTGCTGCCTGTCACTTCTACCAGCTGGATTGTCTGCAAACTTTTTAGAACATTTTTTTCAGTTTACTGTAGAATTAGTGTGACCTTTAGACAAGGTTTTATGTCCCAAGAGACTGTACTTTTAATTGGAGTTGTTTATTTCTTCTCGAGAGGTTCAGACTTAGACATCATTACACTTTAAGAACAGAAACAAGGCTAACTAATCGGTTTAGTTTACAGTATGTTGTGTTCTTTTTTCTTGAGAAGACGTAACGATAAAAAATTTGGACTWAAGATTCAAGAATTTTCTGGAAGTAAATTTCAAAATTTGTTATTTTCAATATAAAATACCAAAACCTTGAGCTCCATTATTTCGATTATTGTGAGAGATATCAAAATTTCGTTAACTAATAAAACATTGCTGATATTATGATAAACGTTTTGTCAGTTGACAACTTGCTGATATCTTTTACATACTTGCAAAATTTGGGCCCTGTCCAGCCCGGCCCGGCGGGCCCGGGTCCTCCAAATTTAAAAAAAATTGAAATTTCAGAAATTCTTTCAATTTTTTTGTGAAAAAAACTATTCTGAAAAAAGCCCGGCCCGGCCCGTTGCAAGTATGATCTTTTACAGGAATCGAGATTAAGCTCAAAGTTGGCGGTTTGGGCGGCAGTTTGATATCAATTACCTCCGTTTTTTTGTTTATCATTCTTGCATACAACTTTGGCATTTTTTTGCAAGAAAACCTAAAGTTATTCCAGAATGTTTTTGTAAACAATATCACATTTTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTTTAGTTTACAGTATGTTGTG</pcr_primer_p1>
		<pcr_primer_p2>TTGTATGCAAGAATGATAAACAA</pcr_primer_p2>
		<pcr_amplicon_size>496</pcr_amplicon_size>
		<canonical_amplicon>CGGTTTAGTTTACAGTATGTTGTGTTCTTTTTTCTTGAGAAGACGTAACGATAAAAAATTTGGACTAAAGATTCAAGAATTTTCTGGAAGTAAATTTCAAAATTTGTTATTTTCAATATAAAATACCAAAACCTTGAGCTCCATTATTTCGATTATTGTGAGAGATATCAAAATTTCGTTAACTAATAAAACATTGCTGATATTATGATAAACGTTTTGTCAGTTGACAACTTGCTGATATCTTTTACATACTTGCAAAATTTGGGCCCTGTCCAGCCCGGCCCGGCGGGCCCGGGTCCTCCAAATTTAAAAAAAATTGAAATTTCAGAAATTCTTTCAATTTTTTTGTGAAAAAAACTATTCTGAAAAAAGCCCGGCCCGGCCCGTTGCAAGTATGATCTTTTACAGGAATCGAGATTAAGCTCAAAGTTGGCGGTTTGGGCGGCAGTTTGATATCAATTACCTCCGTTTTTTTGTTTATCATTCTTGCATACAA</canonical_amplicon>
		<polymorphic_amplicon>CGGTTTAGTTTACAGTATGTTGTGTTCTTTTTTCTTGAGAAGACGTAACGATAAAAAATTTGGACTWAAGATTCAAGAATTTTCTGGAAGTAAATTTCAAAATTTGTTATTTTCAATATAAAATACCAAAACCTTGAGCTCCATTATTTCGATTATTGTGAGAGATATCAAAATTTCGTTAACTAATAAAACATTGCTGATATTATGATAAACGTTTTGTCAGTTGACAACTTGCTGATATCTTTTACATACTTGCAAAATTTGGGCCCTGTCCAGCCCGGCCCGGCGGGCCCGGGTCCTCCAAATTTAAAAAAAATTGAAATTTCAGAAATTCTTTCAATTTTTTTGTGAAAAAAACTATTCTGAAAAAAGCCCGGCCCGGCCCGTTGCAAGTATGATCTTTTACAGGAATCGAGATTAAGCTCAAAGTTGGCGGTTTGGGCGGCAGTTTGATATCAATTACCTCCGTTTTTTTGTTTATCATTCTTGCATACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25915</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>311311</contig_pos>
        <strand>+</strand>
        <context>AAGATTCAAR[A/G]ATTTTCTGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTCTTGAGAAGACGTAACGATAAAAAATTTGGACTAAAGATTCAAG</left_flank>
        <right_flank>ATTTTCTGGAAGTAAATTTCAAAATTTGTTATTTTCAATATAAAATACCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGGAAGTCAATGTTCTTATTTTTCCTATCTTCTGAAGTGATTTCTTGTCAATCATATCCATATGTTTCTTCGATGTGCAATTCCAACCACATTCATCAATTTTGAACCATGAAAAGTGACAGATGGGAATGAATGGTTGGGGGTAGTACATCAATATAATGGGACAAAAAAGACAAAGTGCAGCTGTGGAATCTGCAGAAGACTCCGCCCACTTTTGTGTGCTGCCTGTCACTTCTACCAGCTGGATTGTCTGCAAACTTTTTAGAACATTTTTTTCAGTTTACTGTAGAATTAGTGTGACCTTTAGACAAGGTTTTATGTCCCAAGAGACTGTACTTTTAATTGGAGTTGTTTATTTCTTCTCGAGAGGTTCAGACTTAGACATCATTACACTTTAAGAACAGAAACAAGGCTAACTAATCGGTTTAGTTTACAGTATGTTGTGTTCTTTTTTCTTGAGAAGACGTAACGATAAAAAATTTGGACTAAAGATTCAAGAATTTTCTGGAAGTAAATTTCAAAATTTGTTATTTTCAATATAAAATACCAAAACCTTGAGCTCCATTATTTCGATTATTGTGAGAGATATCAAAATTTCGTTAACTAATAAAACATTGCTGATATTATGATAAACGTTTTGTCAGTTGACAACTTGCTGATATCTTTTACATACTTGCAAAATTTGGGCCCTGTCCAGCCCGGCCCGGCGGGCCCGGGTCCTCCAAATTTAAAAAAAATTGAAATTTCAGAAATTCTTTCAATTTTTTTGTGAAAAAAACTATTCTGAAAAAAGCCCGGCCCGGCCCGTTGCAAGTATGATCTTTTACAGGAATCGAGATTAAGCTCAAAGTTGGCGGTTTGGGCGGCAGTTTGATATCAATTACCTCCGTTTTTTTGTTTATCATTCTTGCATACAACTTTGGCATTTTTTTGCAAGAAAACCTAAAGTTATTCCAGAATGTTTTTGTAAACAATATCACATTTTGTAATGTGGAATTT</canonical>
            <polymorphic>AAGGAAGTCAATGTTCTTATTTTTCCTATCTTCTGAAGTGATTTCTTGTCAATCATATCCATATGTTTCTTCGATGTGCAATTCCAACCACATTCATCAATTTTGAACCATGAAAAGTGACAGATGGGAATGAATGGTTGGGGGTAGTACATCAATATAATGGGACAAAAAAGACAAAGTGCAGCTGTGGAATCTGCAGAAGACTCCGCCCACTTTTGTGTGCTGCCTGTCACTTCTACCAGCTGGATTGTCTGCAAACTTTTTAGAACATTTTTTTCAGTTTACTGTAGAATTAGTGTGACCTTTAGACAAGGTTTTATGTCCCAAGAGACTGTACTTTTAATTGGAGTTGTTTATTTCTTCTCGAGAGGTTCAGACTTAGACATCATTACACTTTAAGAACAGAAACAAGGCTAACTAATCGGTTTAGTTTACAGTATGTTGTGTTCTTTTTTCTTGAGAAGACGTAACGATAAAAAATTTGGACTAAAGATTCAAGRATTTTCTGGAAGTAAATTTCAAAATTTGTTATTTTCAATATAAAATACCAAAACCTTGAGCTCCATTATTTCGATTATTGTGAGAGATATCAAAATTTCGTTAACTAATAAAACATTGCTGATATTATGATAAACGTTTTGTCAGTTGACAACTTGCTGATATCTTTTACATACTTGCAAAATTTGGGCCCTGTCCAGCCCGGCCCGGCGGGCCCGGGTCCTCCAAATTTAAAAAAAATTGAAATTTCAGAAATTCTTTCAATTTTTTTGTGAAAAAAACTATTCTGAAAAAAGCCCGGCCCGGCCCGTTGCAAGTATGATCTTTTACAGGAATCGAGATTAAGCTCAAAGTTGGCGGTTTGGGCGGCAGTTTGATATCAATTACCTCCGTTTTTTTGTTTATCATTCTTGCATACAACTTTGGCATTTTTTTGCAAGAAAACCTAAAGTTATTCCAGAATGTTTTTGTAAACAATATCACATTTTGTAATGTGGAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>478 244 87 71 45 21 17 15 9 8 5</canonical_bands>
                <polymorphic_bands>478 244 87 71 45 36 17 9 8 5</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>363 329 120 91 45 40 10 2</canonical_bands>
                <polymorphic_bands>363 329 120 91 50 45 2</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>192 137 119 116 87 79 71 51 45 21 19 15 11 9 9 8 6 5</canonical_bands>
                <polymorphic_bands>192 137 119 116 87 79 71 51 45 36 19 11 9 9 8 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGTTTAGTTTACAGTATGTTGTG</pcr_primer_p1>
		<pcr_primer_p2>TTGTATGCAAGAATGATAAACAA</pcr_primer_p2>
		<pcr_amplicon_size>496</pcr_amplicon_size>
		<canonical_amplicon>CGGTTTAGTTTACAGTATGTTGTGTTCTTTTTTCTTGAGAAGACGTAACGATAAAAAATTTGGACTAAAGATTCAAGAATTTTCTGGAAGTAAATTTCAAAATTTGTTATTTTCAATATAAAATACCAAAACCTTGAGCTCCATTATTTCGATTATTGTGAGAGATATCAAAATTTCGTTAACTAATAAAACATTGCTGATATTATGATAAACGTTTTGTCAGTTGACAACTTGCTGATATCTTTTACATACTTGCAAAATTTGGGCCCTGTCCAGCCCGGCCCGGCGGGCCCGGGTCCTCCAAATTTAAAAAAAATTGAAATTTCAGAAATTCTTTCAATTTTTTTGTGAAAAAAACTATTCTGAAAAAAGCCCGGCCCGGCCCGTTGCAAGTATGATCTTTTACAGGAATCGAGATTAAGCTCAAAGTTGGCGGTTTGGGCGGCAGTTTGATATCAATTACCTCCGTTTTTTTGTTTATCATTCTTGCATACAA</canonical_amplicon>
		<polymorphic_amplicon>CGGTTTAGTTTACAGTATGTTGTGTTCTTTTTTCTTGAGAAGACGTAACGATAAAAAATTTGGACTAAAGATTCAAGRATTTTCTGGAAGTAAATTTCAAAATTTGTTATTTTCAATATAAAATACCAAAACCTTGAGCTCCATTATTTCGATTATTGTGAGAGATATCAAAATTTCGTTAACTAATAAAACATTGCTGATATTATGATAAACGTTTTGTCAGTTGACAACTTGCTGATATCTTTTACATACTTGCAAAATTTGGGCCCTGTCCAGCCCGGCCCGGCGGGCCCGGGTCCTCCAAATTTAAAAAAAATTGAAATTTCAGAAATTCTTTCAATTTTTTTGTGAAAAAAACTATTCTGAAAAAAGCCCGGCCCGGCCCGTTGCAAGTATGATCTTTTACAGGAATCGAGATTAAGCTCAAAGTTGGCGGTTTGGGCGGCAGTTTGATATCAATTACCTCCGTTTTTTTGTTTATCATTCTTGCATACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25916</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>311332</contig_pos>
        <strand>+</strand>
        <context>AGTAAATTTY[C/T]AAATTTGTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGATAAAAAATTTGGACTAAAGATTCAAGAATTTTCTGGAAGTAAATTTC</left_flank>
        <right_flank>AAATTTGTTATTTTCAATATAAAATACCAAAACCTTGAGCTCCATTATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCTATCTTCTGAAGTGATTTCTTGTCAATCATATCCATATGTTTCTTCGATGTGCAATTCCAACCACATTCATCAATTTTGAACCATGAAAAGTGACAGATGGGAATGAATGGTTGGGGGTAGTACATCAATATAATGGGACAAAAAAGACAAAGTGCAGCTGTGGAATCTGCAGAAGACTCCGCCCACTTTTGTGTGCTGCCTGTCACTTCTACCAGCTGGATTGTCTGCAAACTTTTTAGAACATTTTTTTCAGTTTACTGTAGAATTAGTGTGACCTTTAGACAAGGTTTTATGTCCCAAGAGACTGTACTTTTAATTGGAGTTGTTTATTTCTTCTCGAGAGGTTCAGACTTAGACATCATTACACTTTAAGAACAGAAACAAGGCTAACTAATCGGTTTAGTTTACAGTATGTTGTGTTCTTTTTTCTTGAGAAGACGTAACGATAAAAAATTTGGACTAAAGATTCAAGAATTTTCTGGAAGTAAATTTCAAAATTTGTTATTTTCAATATAAAATACCAAAACCTTGAGCTCCATTATTTCGATTATTGTGAGAGATATCAAAATTTCGTTAACTAATAAAACATTGCTGATATTATGATAAACGTTTTGTCAGTTGACAACTTGCTGATATCTTTTACATACTTGCAAAATTTGGGCCCTGTCCAGCCCGGCCCGGCGGGCCCGGGTCCTCCAAATTTAAAAAAAATTGAAATTTCAGAAATTCTTTCAATTTTTTTGTGAAAAAAACTATTCTGAAAAAAGCCCGGCCCGGCCCGTTGCAAGTATGATCTTTTACAGGAATCGAGATTAAGCTCAAAGTTGGCGGTTTGGGCGGCAGTTTGATATCAATTACCTCCGTTTTTTTGTTTATCATTCTTGCATACAACTTTGGCATTTTTTTGCAAGAAAACCTAAAGTTATTCCAGAATGTTTTTGTAAACAATATCACATTTTGTAATGTGGAATTTAAAAAAAACTATGATTTCAGA</canonical>
            <polymorphic>TTTCCTATCTTCTGAAGTGATTTCTTGTCAATCATATCCATATGTTTCTTCGATGTGCAATTCCAACCACATTCATCAATTTTGAACCATGAAAAGTGACAGATGGGAATGAATGGTTGGGGGTAGTACATCAATATAATGGGACAAAAAAGACAAAGTGCAGCTGTGGAATCTGCAGAAGACTCCGCCCACTTTTGTGTGCTGCCTGTCACTTCTACCAGCTGGATTGTCTGCAAACTTTTTAGAACATTTTTTTCAGTTTACTGTAGAATTAGTGTGACCTTTAGACAAGGTTTTATGTCCCAAGAGACTGTACTTTTAATTGGAGTTGTTTATTTCTTCTCGAGAGGTTCAGACTTAGACATCATTACACTTTAAGAACAGAAACAAGGCTAACTAATCGGTTTAGTTTACAGTATGTTGTGTTCTTTTTTCTTGAGAAGACGTAACGATAAAAAATTTGGACTAAAGATTCAAGAATTTTCTGGAAGTAAATTTCYAAATTTGTTATTTTCAATATAAAATACCAAAACCTTGAGCTCCATTATTTCGATTATTGTGAGAGATATCAAAATTTCGTTAACTAATAAAACATTGCTGATATTATGATAAACGTTTTGTCAGTTGACAACTTGCTGATATCTTTTACATACTTGCAAAATTTGGGCCCTGTCCAGCCCGGCCCGGCGGGCCCGGGTCCTCCAAATTTAAAAAAAATTGAAATTTCAGAAATTCTTTCAATTTTTTTGTGAAAAAAACTATTCTGAAAAAAGCCCGGCCCGGCCCGTTGCAAGTATGATCTTTTACAGGAATCGAGATTAAGCTCAAAGTTGGCGGTTTGGGCGGCAGTTTGATATCAATTACCTCCGTTTTTTTGTTTATCATTCTTGCATACAACTTTGGCATTTTTTTGCAAGAAAACCTAAAGTTATTCCAGAATGTTTTTGTAAACAATATCACATTTTGTAATGTGGAATTTAAAAAAAACTATGATTTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGAAGACGTAACGATAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TATGCAAGAATGATAAACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>459</pcr_amplicon_size>
		<canonical_amplicon>TTGAGAAGACGTAACGATAAAAAATTTGGACTAAAGATTCAAGAATTTTCTGGAAGTAAATTTCAAAATTTGTTATTTTCAATATAAAATACCAAAACCTTGAGCTCCATTATTTCGATTATTGTGAGAGATATCAAAATTTCGTTAACTAATAAAACATTGCTGATATTATGATAAACGTTTTGTCAGTTGACAACTTGCTGATATCTTTTACATACTTGCAAAATTTGGGCCCTGTCCAGCCCGGCCCGGCGGGCCCGGGTCCTCCAAATTTAAAAAAAATTGAAATTTCAGAAATTCTTTCAATTTTTTTGTGAAAAAAACTATTCTGAAAAAAGCCCGGCCCGGCCCGTTGCAAGTATGATCTTTTACAGGAATCGAGATTAAGCTCAAAGTTGGCGGTTTGGGCGGCAGTTTGATATCAATTACCTCCGTTTTTTTGTTTATCATTCTTGCATA</canonical_amplicon>
		<polymorphic_amplicon>TTGAGAAGACGTAACGATAAAAAATTTGGACTAAAGATTCAAGAATTTTCTGGAAGTAAATTTCYAAATTTGTTATTTTCAATATAAAATACCAAAACCTTGAGCTCCATTATTTCGATTATTGTGAGAGATATCAAAATTTCGTTAACTAATAAAACATTGCTGATATTATGATAAACGTTTTGTCAGTTGACAACTTGCTGATATCTTTTACATACTTGCAAAATTTGGGCCCTGTCCAGCCCGGCCCGGCGGGCCCGGGTCCTCCAAATTTAAAAAAAATTGAAATTTCAGAAATTCTTTCAATTTTTTTGTGAAAAAAACTATTCTGAAAAAAGCCCGGCCCGGCCCGTTGCAAGTATGATCTTTTACAGGAATCGAGATTAAGCTCAAAGTTGGCGGTTTGGGCGGCAGTTTGATATCAATTACCTCCGTTTTTTTGTTTATCATTCTTGCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25917</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>337015</contig_pos>
        <strand></strand>
        <context>tactgtAGGT[A/G]SCAAaccgtt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACGAAAGAAAATACGTTTTTGTATGATTTATTTGCCAGTACTGTAGGT</left_flank>
        <right_flank>CCAAACCGTTAACTTTGAGCTCGTTTATCTCGGTTGCCTTGGAAGACGTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGAATATACGAACACCAGAGGTTACATCCATAAACTTGGAATACACCCGAGAGGCGCCTTATAAAATATCCCTAGTTCCATATTTTTTTTATTTTCAGGAGGCGTCACACTTCTTCGAGCAGCCGCCAAAAATCACGAACGTGTCAGTGTGATCTGCGATCCTGCTGACTACGACAACATCCTCTCGGAAGTAAGTTAATTTTGAAAGGTATTTAGATGACAAGATTACGGTAGCTTCACCTTTTTGAGGGCAGAGTGAATTTCAACACAAAAACATGAAAAACAGTTGACATTCAGAAATTGACAAATAGCTGAAAAACTAGGAATTTTTGAAAAATTCTTCGAATGCAATGTTCTCAATCTAGGTCACACCGTCCAAAATTTTCAAAGTGATCGGAAACTTGACAGCCGAAATCGAGGCTCCTGAAAATGGTCAAAATGGCCAAAAAACGAAAGAAAATACGTTTTTGTATGATTTATTTGCCAGTACTGTAGGTACCAAACCGTTAACTTTGAGCTCGTTTATCTCGGTTGCCTTGGAAGACGTAAAAATTTTGTCAACTGATAAAATATTGGTGATTTTATGAGAAACAATTTATCAGTGAACAAACTTTCGGGATCTCTCACAGGCATCGAGATAAATCACAGGCATCGAGATAAAATTAAAAGTTCGGGCCCTTCTATTACAGGTTTTACGCAGTATGATGTCTACAAAAGTTGGACTTCATCATTTTTGGGTTAAACAAGAGCCTAGTTTATTCAACTCAATTCTATAGAAACCGTCTAAATCCATTTGTTAACCCAAAACTCAAAAACCTCAAAGCGGCCTAAAAGAATGAATGAAATATTTTGACACGCTCGGTATGTTCCTTGGGAGCCATATATTTTGACTAGAAGACAACAAGAAAAAAGGATTCCTCACTTCTTTTTTTTTTGGGAAGATCTCAAGAGAACCCCCTGAAAAATTGAGGTTATAAATGAACAGCAGACGACGTCAT</canonical>
            <polymorphic>TGTGAATATACGAACACCAGAGGTTACATCCATAAACTTGGAATACACCCGAGAGGCGCCTTATAAAATATCCCTAGTTCCATATTTTTTTTATTTTCAGGAGGCGTCACACTTCTTCGAGCAGCCGCCAAAAATCACGAACGTGTCAGTGTGATCTGCGATCCTGCTGACTACGACAACATCCTCTCGGAAGTAAGTTAATTTTGAAAGGTATTTAGATGACAAGATTACGGTAGCTTCACCTTTTTGAGGGCAGAGTGAATTTCAACACAAAAACATGAAAAACAGTTGACATTCAGAAATTGACAAATAGCTGAAAAACTAGGAATTTTTGAAAAATTCTTCGAATGCAATGTTCTCAATCTAGGTCACACCGTCCAAAATTTTCAAAGTGATCGGAAACTTGACAGCCGAAATCGAGGCTCCTGAAAATGGTCAAAATGGCCAAAAAACGAAAGAAAATACGTTTTTGTATGATTTATTTGCCAGTACTGTAGGTRCCAAACCGTTAACTTTGAGCTCGTTTATCTCGGTTGCCTTGGAAGACGTAAAAATTTTGTCAACTGATAAAATATTGGTGATTTTATGAGAAACAATTTATCAGTGAACAAACTTTCGGGATCTCTCACAGGCATCGAGATAAATCACAGGCATCGAGATAAAATTAAAAGTTCGGGCCCTTCTATTACAGGTTTTACGCAGTATGATGTCTACAAAAGTTGGACTTCATCATTTTTGGGTTAAACAAGAGCCTAGTTTATTCAACTCAATTCTATAGAAACCGTCTAAATCCATTTGTTAACCCAAAACTCAAAAACCTCAAAGCGGCCTAAAAGAATGAATGAAATATTTTGACACGCTCGGTATGTTCCTTGGGAGCCATATATTTTGACTAGAAGACAACAAGAAAAAAGGATTCCTCACTTCTTTTTTTTTTGGGAAGATCTCAAGAGAACCCCCTGAAAAATTGAGGTTATAAATGAACAGCAGACGACGTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGTACC</site>
                <isoschizomers>
                    <enzyme>Acc65I</enzyme>
                    <enzyme>Asp718I</enzyme>
                    <enzyme>KpnI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>503 442 55</canonical_bands>
                <polymorphic_bands>945 55</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 490 9</canonical_bands>
                <polymorphic_bands>510 490</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACGGTAGCTTCACCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CCAACTTTTGTAGACATCATACTG</pcr_primer_p2>
		<pcr_amplicon_size>496</pcr_amplicon_size>
		<canonical_amplicon>TTACGGTAGCTTCACCTTTTTGAGGGCAGAGTGAATTTCAACACAAAAACATGAAAAACAGTTGACATTCAGAAATTGACAAATAGCTGAAAAACTAGGAATTTTTGAAAAATTCTTCGAATGCAATGTTCTCAATCTAGGTCACACCGTCCAAAATTTTCAAAGTGATCGGAAACTTGACAGCCGAAATCGAGGCTCCTGAAAATGGTCAAAATGGCCAAAAAACGAAAGAAAATACGTTTTTGTATGATTTATTTGCCAGTACTGTAGGTACCAAACCGTTAACTTTGAGCTCGTTTATCTCGGTTGCCTTGGAAGACGTAAAAATTTTGTCAACTGATAAAATATTGGTGATTTTATGAGAAACAATTTATCAGTGAACAAACTTTCGGGATCTCTCACAGGCATCGAGATAAATCACAGGCATCGAGATAAAATTAAAAGTTCGGGCCCTTCTATTACAGGTTTTACGCAGTATGATGTCTACAAAAGTTGG</canonical_amplicon>
		<polymorphic_amplicon>TTACGGTAGCTTCACCTTTTTGAGGGCAGAGTGAATTTCAACACAAAAACATGAAAAACAGTTGACATTCAGAAATTGACAAATAGCTGAAAAACTAGGAATTTTTGAAAAATTCTTCGAATGCAATGTTCTCAATCTAGGTCACACCGTCCAAAATTTTCAAAGTGATCGGAAACTTGACAGCCGAAATCGAGGCTCCTGAAAATGGTCAAAATGGCCAAAAAACGAAAGAAAATACGTTTTTGTATGATTTATTTGCCAGTACTGTAGGTRCCAAACCGTTAACTTTGAGCTCGTTTATCTCGGTTGCCTTGGAAGACGTAAAAATTTTGTCAACTGATAAAATATTGGTGATTTTATGAGAAACAATTTATCAGTGAACAAACTTTCGGGATCTCTCACAGGCATCGAGATAAATCACAGGCATCGAGATAAAATTAAAAGTTCGGGCCCTTCTATTACAGGTTTTACGCAGTATGATGTCTACAAAAGTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25918</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>337016</contig_pos>
        <strand></strand>
        <context>actgtAGGTR[C/G]CAAaccgtta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AACGAAAGAAAATACGTTTTTGTATGATTTATTTGCCAGTACTGTAGGTA</left_flank>
        <right_flank>CAAACCGTTAACTTTGAGCTCGTTTATCTCGGTTGCCTTGGAAGACGTAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGAATATACGAACACCAGAGGTTACATCCATAAACTTGGAATACACCCGAGAGGCGCCTTATAAAATATCCCTAGTTCCATATTTTTTTTATTTTCAGGAGGCGTCACACTTCTTCGAGCAGCCGCCAAAAATCACGAACGTGTCAGTGTGATCTGCGATCCTGCTGACTACGACAACATCCTCTCGGAAGTAAGTTAATTTTGAAAGGTATTTAGATGACAAGATTACGGTAGCTTCACCTTTTTGAGGGCAGAGTGAATTTCAACACAAAAACATGAAAAACAGTTGACATTCAGAAATTGACAAATAGCTGAAAAACTAGGAATTTTTGAAAAATTCTTCGAATGCAATGTTCTCAATCTAGGTCACACCGTCCAAAATTTTCAAAGTGATCGGAAACTTGACAGCCGAAATCGAGGCTCCTGAAAATGGTCAAAATGGCCAAAAAACGAAAGAAAATACGTTTTTGTATGATTTATTTGCCAGTACTGTAGGTACCAAACCGTTAACTTTGAGCTCGTTTATCTCGGTTGCCTTGGAAGACGTAAAAATTTTGTCAACTGATAAAATATTGGTGATTTTATGAGAAACAATTTATCAGTGAACAAACTTTCGGGATCTCTCACAGGCATCGAGATAAATCACAGGCATCGAGATAAAATTAAAAGTTCGGGCCCTTCTATTACAGGTTTTACGCAGTATGATGTCTACAAAAGTTGGACTTCATCATTTTTGGGTTAAACAAGAGCCTAGTTTATTCAACTCAATTCTATAGAAACCGTCTAAATCCATTTGTTAACCCAAAACTCAAAAACCTCAAAGCGGCCTAAAAGAATGAATGAAATATTTTGACACGCTCGGTATGTTCCTTGGGAGCCATATATTTTGACTAGAAGACAACAAGAAAAAAGGATTCCTCACTTCTTTTTTTTTTGGGAAGATCTCAAGAGAACCCCCTGAAAAATTGAGGTTATAAATGAACAGCAGACGACGTCATA</canonical>
            <polymorphic>GTGAATATACGAACACCAGAGGTTACATCCATAAACTTGGAATACACCCGAGAGGCGCCTTATAAAATATCCCTAGTTCCATATTTTTTTTATTTTCAGGAGGCGTCACACTTCTTCGAGCAGCCGCCAAAAATCACGAACGTGTCAGTGTGATCTGCGATCCTGCTGACTACGACAACATCCTCTCGGAAGTAAGTTAATTTTGAAAGGTATTTAGATGACAAGATTACGGTAGCTTCACCTTTTTGAGGGCAGAGTGAATTTCAACACAAAAACATGAAAAACAGTTGACATTCAGAAATTGACAAATAGCTGAAAAACTAGGAATTTTTGAAAAATTCTTCGAATGCAATGTTCTCAATCTAGGTCACACCGTCCAAAATTTTCAAAGTGATCGGAAACTTGACAGCCGAAATCGAGGCTCCTGAAAATGGTCAAAATGGCCAAAAAACGAAAGAAAATACGTTTTTGTATGATTTATTTGCCAGTACTGTAGGTASCAAACCGTTAACTTTGAGCTCGTTTATCTCGGTTGCCTTGGAAGACGTAAAAATTTTGTCAACTGATAAAATATTGGTGATTTTATGAGAAACAATTTATCAGTGAACAAACTTTCGGGATCTCTCACAGGCATCGAGATAAATCACAGGCATCGAGATAAAATTAAAAGTTCGGGCCCTTCTATTACAGGTTTTACGCAGTATGATGTCTACAAAAGTTGGACTTCATCATTTTTGGGTTAAACAAGAGCCTAGTTTATTCAACTCAATTCTATAGAAACCGTCTAAATCCATTTGTTAACCCAAAACTCAAAAACCTCAAAGCGGCCTAAAAGAATGAATGAAATATTTTGACACGCTCGGTATGTTCCTTGGGAGCCATATATTTTGACTAGAAGACAACAAGAAAAAAGGATTCCTCACTTCTTTTTTTTTTGGGAAGATCTCAAGAGAACCCCCTGAAAAATTGAGGTTATAAATGAACAGCAGACGACGTCATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGTACC</site>
                <isoschizomers>
                    <enzyme>Acc65I</enzyme>
                    <enzyme>Asp718I</enzyme>
                    <enzyme>KpnI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>504 442 54</canonical_bands>
                <polymorphic_bands>946 54</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 489 9</canonical_bands>
                <polymorphic_bands>511 489</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>366 201 178 123 76 56</canonical_bands>
                <polymorphic_bands>366 254 201 123 56</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACGGTAGCTTCACCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CCAACTTTTGTAGACATCATACTG</pcr_primer_p2>
		<pcr_amplicon_size>496</pcr_amplicon_size>
		<canonical_amplicon>TTACGGTAGCTTCACCTTTTTGAGGGCAGAGTGAATTTCAACACAAAAACATGAAAAACAGTTGACATTCAGAAATTGACAAATAGCTGAAAAACTAGGAATTTTTGAAAAATTCTTCGAATGCAATGTTCTCAATCTAGGTCACACCGTCCAAAATTTTCAAAGTGATCGGAAACTTGACAGCCGAAATCGAGGCTCCTGAAAATGGTCAAAATGGCCAAAAAACGAAAGAAAATACGTTTTTGTATGATTTATTTGCCAGTACTGTAGGTACCAAACCGTTAACTTTGAGCTCGTTTATCTCGGTTGCCTTGGAAGACGTAAAAATTTTGTCAACTGATAAAATATTGGTGATTTTATGAGAAACAATTTATCAGTGAACAAACTTTCGGGATCTCTCACAGGCATCGAGATAAATCACAGGCATCGAGATAAAATTAAAAGTTCGGGCCCTTCTATTACAGGTTTTACGCAGTATGATGTCTACAAAAGTTGG</canonical_amplicon>
		<polymorphic_amplicon>TTACGGTAGCTTCACCTTTTTGAGGGCAGAGTGAATTTCAACACAAAAACATGAAAAACAGTTGACATTCAGAAATTGACAAATAGCTGAAAAACTAGGAATTTTTGAAAAATTCTTCGAATGCAATGTTCTCAATCTAGGTCACACCGTCCAAAATTTTCAAAGTGATCGGAAACTTGACAGCCGAAATCGAGGCTCCTGAAAATGGTCAAAATGGCCAAAAAACGAAAGAAAATACGTTTTTGTATGATTTATTTGCCAGTACTGTAGGTASCAAACCGTTAACTTTGAGCTCGTTTATCTCGGTTGCCTTGGAAGACGTAAAAATTTTGTCAACTGATAAAATATTGGTGATTTTATGAGAAACAATTTATCAGTGAACAAACTTTCGGGATCTCTCACAGGCATCGAGATAAATCACAGGCATCGAGATAAAATTAAAAGTTCGGGCCCTTCTATTACAGGTTTTACGCAGTATGATGTCTACAAAAGTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25919</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>352731</contig_pos>
        <strand>+</strand>
        <context>GCGTCACGCA[C/G]ATATGACGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTAGAAATCTCCGAATGAAACATTTCCTTTTTTAGAAGTTGCGTCACGCA</left_flank>
        <right_flank>ATATGACGTATTCTTCAGAAGACGTCAAAAATACACTACTCATCTGTTCC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGAGAACGATTTGATTAATGAGAGGATTTGTGACCCCGTTTTTCCAAATATGGGTACAACTGGGCACGTCACTCGTACTAAATTGGGTCCTGACATTACTAAATTTGGGGTCATTTCAAGGAAAATAGGGATTATAATAAGTGGACAAAATTGGTGTCAAAGATATTTAAATGAAGAAGAAGATCTTTGCAAAAATAGAATACCATCAACACTCTAATTTATCTCGGTTTCTGTGAAAGATATCAAAAAGTTATCAACTGAAAAATGACTTGGACATTATGATAAAAATTTTATCAGTGGACCAGTTTTTGATATTTTCTACGGAAAACGAGATATATGAACACAAAGTTGATGGTTTGAGGTAGTCAGAATCAACTACAGTAATCTCTTTGTATCAACTATTTTTACACATTTCGTCATGCTCCTTCTTCTCTTCAGAATCGAATTTTAGAAATCTCCGAATGAAACATTTCCTTTTTTAGAAGTTGCGTCACGCACATATGACGTATTCTTCAGAAGACGTCAAAAATACACTACTCATCTGTTCCAAACAAAAAAGCAAAAAGTTCCAAGTCTCTCGGGAGCTATTATTCAGAGAAAAACAAACAAAAAAAACTAGTTCCAAAATATATTGATAACCAACAGGGTTCGAACTGCTGCGGTATGCTGTTGCCCTATATTGGGAAAGTGGGGTGGCGAAGTTTTAGGCTGTTGAAAAATCAAATTTCCCGCAATTTTTCCCACCTCAACATTAATTTTTCACGGGCGTTTGCCCTGTCACCTTCACATTGGAGCGCAACAGCATATACAGAAATTTGAACCCTCTGAGAATAATTCTATTCAAAGACTGTAAAATATTTAAATATCCTCACAAAAAATTGTCAAACTGAAAAAAGAGACTATTGATGTCAAAATTTAATAAAATGATTGATTTCCTTTCTTCTTTTTTCTTCTCCTCCCACCTCCTTCCGGACACTACACCCCAACTGATAACGCAG</canonical>
            <polymorphic>ACAGAGAACGATTTGATTAATGAGAGGATTTGTGACCCCGTTTTTCCAAATATGGGTACAACTGGGCACGTCACTCGTACTAAATTGGGTCCTGACATTACTAAATTTGGGGTCATTTCAAGGAAAATAGGGATTATAATAAGTGGACAAAATTGGTGTCAAAGATATTTAAATGAAGAAGAAGATCTTTGCAAAAATAGAATACCATCAACACTCTAATTTATCTCGGTTTCTGTGAAAGATATCAAAAAGTTATCAACTGAAAAATGACTTGGACATTATGATAAAAATTTTATCAGTGGACCAGTTTTTGATATTTTCTACGGAAAACGAGATATATGAACACAAAGTTGATGGTTTGAGGTAGTCAGAATCAACTACAGTAATCTCTTTGTATCAACTATTTTTACACATTTCGTCATGCTCCTTCTTCTCTTCAGAATCGAATTTTAGAAATCTCCGAATGAAACATTTCCTTTTTTAGAAGTTGCGTCACGCASATATGACGTATTCTTCAGAAGACGTCAAAAATACACTACTCATCTGTTCCAAACAAAAAAGCAAAAAGTTCCAAGTCTCTCGGGAGCTATTATTCAGAGAAAAACAAACAAAAAAAACTAGTTCCAAAATATATTGATAACCAACAGGGTTCGAACTGCTGCGGTATGCTGTTGCCCTATATTGGGAAAGTGGGGTGGCGAAGTTTTAGGCTGTTGAAAAATCAAATTTCCCGCAATTTTTCCCACCTCAACATTAATTTTTCACGGGCGTTTGCCCTGTCACCTTCACATTGGAGCGCAACAGCATATACAGAAATTTGAACCCTCTGAGAATAATTCTATTCAAAGACTGTAAAATATTTAAATATCCTCACAAAAAATTGTCAAACTGAAAAAAGAGACTATTGATGTCAAAATTTAATAAAATGATTGATTTCCTTTCTTCTTTTTTCTTCTCCTCCCACCTCCTTCCGGACACTACACCCCAACTGATAACGCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATATG</site>
                <isoschizomers>
                    <enzyme>FauNDI</enzyme>
                    <enzyme>NdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>157 90 85 84 72 66 64 55 48 44 36 34 34 24 19 18 18 14 13 6 5 5 5 4</canonical_bands>
                <polymorphic_bands>157 90 85 84 72 66 64 55 48 44 40 34 34 24 19 18 18 14 13 6 5 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAGAATCAACTACAGTAATCTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGTTTGTTTTTCTCTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCAGAATCAACTACAGTAATCTCTTTGTATCAACTATTTTTACACATTTCGTCATGCTCCTTCTTCTCTTCAGAATCGAATTTTAGAAATCTCCGAATGAAACATTTCCTTTTTTAGAAGTTGCGTCACGCACATATGACGTATTCTTCAGAAGACGTCAAAAATACACTACTCATCTGTTCCAAACAAAAAAGCAAAAAGTTCCAAGTCTCTCGGGAGCTATTATTCAGAGAAAAACAAACAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCAGAATCAACTACAGTAATCTCTTTGTATCAACTATTTTTACACATTTCGTCATGCTCCTTCTTCTCTTCAGAATCGAATTTTAGAAATCTCCGAATGAAACATTTCCTTTTTTAGAAGTTGCGTCACGCASATATGACGTATTCTTCAGAAGACGTCAAAAATACACTACTCATCTGTTCCAAACAAAAAAGCAAAAAGTTCCAAGTCTCTCGGGAGCTATTATTCAGAGAAAAACAAACAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25920</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>484892</contig_pos>
        <strand>+</strand>
        <context>GCTGAAGGTT[A/G]KCCGCCAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACGTTCGAAATATCATCAGCTTGCTGGTTCTCAAGAAAAGCTGAAGGTT</left_flank>
        <right_flank>TCCGCCAGAAACTGTTTTAAGAGCTTAACGAGTTTTCTATAGACTTCTGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCGGTCCGTCTGGTCATTTTACTTCTTTTATTTGTACAGGTCCCATTTCTTGCCAAATTATCTATCTATTTCCCCCATGCATTGCAAATAAATATATTATTATTATCACGTTCGGGAAAGTGATCAACCCAACATTGGGGACGTGGCGAGGATGCATCCAAGTTGGTAGACTATCGGAAGATCAGAGCATATCCTAGTTCCAATTTGATTCCCTGAACCATCCAGTTTCACCATTAGTTCCAAGATTTTTGATAGAAATTCAGAGCAATATTCTGGCTTGCAAAGTAATTATATAATTTATCAACAAATCCTTGATGAATACGAACAAGCAAGGTATCTACTATTTGCGTTTTTTTGTTAGCCACATAAACATTTCAGTTGCCAAAGGTGCCCGGAAATCGGCTCAGCCTAGTTCTAATGAGCATTTGAAAGCTTCGAGTTTTCAAGAACGTTCGAAATATCATCAGCTTGCTGGTTCTCAAGAAAAGCTGAAGGTTATCCGCCAGAAACTGTTTTAAGAGCTTAACGAGTTTTCTATAGACTTCTGGAACTAATGAGAAGCATCAACCGAAAAGTGGAGAGAAACTGAAACCCCAAACGTCTCCAGATCTTCCCCGTAAAGCACCAGTTAAAGGGAAAAATGGACTAAAGAAGAGAGGTTCCACTGAAAAACGGGTTAAAACTACAGCAACTAAAACCATCAGCAGAGAGGTAGCATAGCTTTTTTCTGATTTTTCGATTTTTTTGAGTTTTAGGAAGAAGACGATAAGCCAGTTGGGTTGGAGCGCAAGCGTTCTGTTGAGCAGCAGGAGTTCATGGAAGATACTGCAAAGTTGGCTAGAAAGCCATCTATGAATGCTCTTTCTGAAACTAAAGTTTTATTGGGTAAGGAGAAGGATAAGGATAAGAAGAAAGAGGATGAAATGAAAATGAAGAAGAAAGAAGAGGAGAAAGAAAAGGAGGATGAGTTTGCAAGTGATCCCAGGGAGGATAAAGAG</canonical>
            <polymorphic>TGTCGGTCCGTCTGGTCATTTTACTTCTTTTATTTGTACAGGTCCCATTTCTTGCCAAATTATCTATCTATTTCCCCCATGCATTGCAAATAAATATATTATTATTATCACGTTCGGGAAAGTGATCAACCCAACATTGGGGACGTGGCGAGGATGCATCCAAGTTGGTAGACTATCGGAAGATCAGAGCATATCCTAGTTCCAATTTGATTCCCTGAACCATCCAGTTTCACCATTAGTTCCAAGATTTTTGATAGAAATTCAGAGCAATATTCTGGCTTGCAAAGTAATTATATAATTTATCAACAAATCCTTGATGAATACGAACAAGCAAGGTATCTACTATTTGCGTTTTTTTGTTAGCCACATAAACATTTCAGTTGCCAAAGGTGCCCGGAAATCGGCTCAGCCTAGTTCTAATGAGCATTTGAAAGCTTCGAGTTTTCAAGAACGTTCGAAATATCATCAGCTTGCTGGTTCTCAAGAAAAGCTGAAGGTTRTCCGCCAGAAACTGTTTTAAGAGCTTAACGAGTTTTCTATAGACTTCTGGAACTAATGAGAAGCATCAACCGAAAAGTGGAGAGAAACTGAAACCCCAAACGTCTCCAGATCTTCCCCGTAAAGCACCAGTTAAAGGGAAAAATGGACTAAAGAAGAGAGGTTCCACTGAAAAACGGGTTAAAACTACAGCAACTAAAACCATCAGCAGAGAGGTAGCATAGCTTTTTTCTGATTTTTCGATTTTTTTGAGTTTTAGGAAGAAGACGATAAGCCAGTTGGGTTGGAGCGCAAGCGTTCTGTTGAGCAGCAGGAGTTCATGGAAGATACTGCAAAGTTGGCTAGAAAGCCATCTATGAATGCTCTTTCTGAAACTAAAGTTTTATTGGGTAAGGAGAAGGATAAGGATAAGAAGAAAGAGGATGAAATGAAAATGAAGAAGAAAGAAGAGGAGAAAGAAAAGGAGGATGAGTTTGCAAGTGATCCCAGGGAGGATAAAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATACGAACAAGCAAGGTATCTA</pcr_primer_p1>
		<pcr_primer_p2>GTTGATGCTTCTCATTAGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATACGAACAAGCAAGGTATCTACTATTTGCGTTTTTTTGTTAGCCACATAAACATTTCAGTTGCCAAAGGTGCCCGGAAATCGGCTCAGCCTAGTTCTAATGAGCATTTGAAAGCTTCGAGTTTTCAAGAACGTTCGAAATATCATCAGCTTGCTGGTTCTCAAGAAAAGCTGAAGGTTATCCGCCAGAAACTGTTTTAAGAGCTTAACGAGTTTTCTATAGACTTCTGGAACTAATGAGAAGCATCAAC</canonical_amplicon>
		<polymorphic_amplicon>AATACGAACAAGCAAGGTATCTACTATTTGCGTTTTTTTGTTAGCCACATAAACATTTCAGTTGCCAAAGGTGCCCGGAAATCGGCTCAGCCTAGTTCTAATGAGCATTTGAAAGCTTCGAGTTTTCAAGAACGTTCGAAATATCATCAGCTTGCTGGTTCTCAAGAAAAGCTGAAGGTTRTCCGCCAGAAACTGTTTTAAGAGCTTAACGAGTTTTCTATAGACTTCTGGAACTAATGAGAAGCATCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25921</snp_id>
        <super_contig>c001800656.Contig3</super_contig>
        <contig_pos>484893</contig_pos>
        <strand>+</strand>
        <context>CTGAAGGTTR[G/T]CCGCCAGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACGTTCGAAATATCATCAGCTTGCTGGTTCTCAAGAAAAGCTGAAGGTTA</left_flank>
        <right_flank>CCGCCAGAAACTGTTTTAAGAGCTTAACGAGTTTTCTATAGACTTCTGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCGGTCCGTCTGGTCATTTTACTTCTTTTATTTGTACAGGTCCCATTTCTTGCCAAATTATCTATCTATTTCCCCCATGCATTGCAAATAAATATATTATTATTATCACGTTCGGGAAAGTGATCAACCCAACATTGGGGACGTGGCGAGGATGCATCCAAGTTGGTAGACTATCGGAAGATCAGAGCATATCCTAGTTCCAATTTGATTCCCTGAACCATCCAGTTTCACCATTAGTTCCAAGATTTTTGATAGAAATTCAGAGCAATATTCTGGCTTGCAAAGTAATTATATAATTTATCAACAAATCCTTGATGAATACGAACAAGCAAGGTATCTACTATTTGCGTTTTTTTGTTAGCCACATAAACATTTCAGTTGCCAAAGGTGCCCGGAAATCGGCTCAGCCTAGTTCTAATGAGCATTTGAAAGCTTCGAGTTTTCAAGAACGTTCGAAATATCATCAGCTTGCTGGTTCTCAAGAAAAGCTGAAGGTTATCCGCCAGAAACTGTTTTAAGAGCTTAACGAGTTTTCTATAGACTTCTGGAACTAATGAGAAGCATCAACCGAAAAGTGGAGAGAAACTGAAACCCCAAACGTCTCCAGATCTTCCCCGTAAAGCACCAGTTAAAGGGAAAAATGGACTAAAGAAGAGAGGTTCCACTGAAAAACGGGTTAAAACTACAGCAACTAAAACCATCAGCAGAGAGGTAGCATAGCTTTTTTCTGATTTTTCGATTTTTTTGAGTTTTAGGAAGAAGACGATAAGCCAGTTGGGTTGGAGCGCAAGCGTTCTGTTGAGCAGCAGGAGTTCATGGAAGATACTGCAAAGTTGGCTAGAAAGCCATCTATGAATGCTCTTTCTGAAACTAAAGTTTTATTGGGTAAGGAGAAGGATAAGGATAAGAAGAAAGAGGATGAAATGAAAATGAAGAAGAAAGAAGAGGAGAAAGAAAAGGAGGATGAGTTTGCAAGTGATCCCAGGGAGGATAAAGAGC</canonical>
            <polymorphic>GTCGGTCCGTCTGGTCATTTTACTTCTTTTATTTGTACAGGTCCCATTTCTTGCCAAATTATCTATCTATTTCCCCCATGCATTGCAAATAAATATATTATTATTATCACGTTCGGGAAAGTGATCAACCCAACATTGGGGACGTGGCGAGGATGCATCCAAGTTGGTAGACTATCGGAAGATCAGAGCATATCCTAGTTCCAATTTGATTCCCTGAACCATCCAGTTTCACCATTAGTTCCAAGATTTTTGATAGAAATTCAGAGCAATATTCTGGCTTGCAAAGTAATTATATAATTTATCAACAAATCCTTGATGAATACGAACAAGCAAGGTATCTACTATTTGCGTTTTTTTGTTAGCCACATAAACATTTCAGTTGCCAAAGGTGCCCGGAAATCGGCTCAGCCTAGTTCTAATGAGCATTTGAAAGCTTCGAGTTTTCAAGAACGTTCGAAATATCATCAGCTTGCTGGTTCTCAAGAAAAGCTGAAGGTTAKCCGCCAGAAACTGTTTTAAGAGCTTAACGAGTTTTCTATAGACTTCTGGAACTAATGAGAAGCATCAACCGAAAAGTGGAGAGAAACTGAAACCCCAAACGTCTCCAGATCTTCCCCGTAAAGCACCAGTTAAAGGGAAAAATGGACTAAAGAAGAGAGGTTCCACTGAAAAACGGGTTAAAACTACAGCAACTAAAACCATCAGCAGAGAGGTAGCATAGCTTTTTTCTGATTTTTCGATTTTTTTGAGTTTTAGGAAGAAGACGATAAGCCAGTTGGGTTGGAGCGCAAGCGTTCTGTTGAGCAGCAGGAGTTCATGGAAGATACTGCAAAGTTGGCTAGAAAGCCATCTATGAATGCTCTTTCTGAAACTAAAGTTTTATTGGGTAAGGAGAAGGATAAGGATAAGAAGAAAGAGGATGAAATGAAAATGAAGAAGAAAGAAGAGGAGAAAGAAAAGGAGGATGAGTTTGCAAGTGATCCCAGGGAGGATAAAGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATACGAACAAGCAAGGTATCTA</pcr_primer_p1>
		<pcr_primer_p2>GTTGATGCTTCTCATTAGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATACGAACAAGCAAGGTATCTACTATTTGCGTTTTTTTGTTAGCCACATAAACATTTCAGTTGCCAAAGGTGCCCGGAAATCGGCTCAGCCTAGTTCTAATGAGCATTTGAAAGCTTCGAGTTTTCAAGAACGTTCGAAATATCATCAGCTTGCTGGTTCTCAAGAAAAGCTGAAGGTTATCCGCCAGAAACTGTTTTAAGAGCTTAACGAGTTTTCTATAGACTTCTGGAACTAATGAGAAGCATCAAC</canonical_amplicon>
		<polymorphic_amplicon>AATACGAACAAGCAAGGTATCTACTATTTGCGTTTTTTTGTTAGCCACATAAACATTTCAGTTGCCAAAGGTGCCCGGAAATCGGCTCAGCCTAGTTCTAATGAGCATTTGAAAGCTTCGAGTTTTCAAGAACGTTCGAAATATCATCAGCTTGCTGGTTCTCAAGAAAAGCTGAAGGTTAKCCGCCAGAAACTGTTTTAAGAGCTTAACGAGTTTTCTATAGACTTCTGGAACTAATGAGAAGCATCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25922</snp_id>
        <super_contig>c001800837.Contig1</super_contig>
        <contig_pos>3227</contig_pos>
        <strand></strand>
        <context>CAGCATTTTC[T/C]CCTCATATGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAAAACATTTGTATTTTTAGAATAATAATAATAATAGTTCAGCATTTTC</left_flank>
        <right_flank>CCTCATATGATTTTCGACGTACCATGGTACGGTCTCTGCCAATCGTCGGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAACGGAAGTTTCTTGTGTTCACATTCGGTGATGATGTCCATCAAGTAGCTATCGTTCTTGCAGTAGTTGAGGCGTTTTTCTAAAATTAGGGACCATTCAAAAATGCAAGTTTCAAAGGAGCCACCTTTTCCAACAGTGTAGCACAACGAGAATTCTTGTTGCTCATGAAGTGATCTCACATTCAACAGACTACAAAGTTCCTGAATCATCTCCTCGACTACTGCAATTGGACGAAGTGTCTGGTTGACACTATGTTCTCGTGAGATGAAGAATGCTTGACGTCTCAGTTGACTTCCGTCCTGTAAAAAAATATTCATCAAACTGTTTACATGAAAACACGATTACCGTAATCTGTTGAACTTCTAGAGCATTCAGTAGAACTTTACGCCCACCGTACTTGAACGTTTGAATCATGTTTGTTTGGCAAATTCGTGCGGTACCTGTTGGAAAAAACATTTGTATTTTTAGAATAATAATAATAATAGTTCAGCATTTTCTCCTCATATGATTTTCGACGTACCATGGTACGGTCTCTGCCAATCGTCGGCATTGTCTCCGAGATATTGAAGAATGTAGGGTTTCAAAGTTAGGCTGGATGGGAAGTAAGCAGTGATAATGGTGAGAAGTCTCCAAGCACGGAGAGAGCTGTTCGGTCTGAAATTTTAGTTTTTTTTCTCTCTGACAGTTTATTTTTAGGGAACTTCAAAACTTTTTGAACCCAGATTTTGATGAAAATTTTTGGATAAGTTGAGAATAGTCTATTTAGACACCTTTAAGGATGTTGGAAAAAATTAATTAATTTAAAAACTTTTTTCAATTTTCAAATCAATCCAAGTCGTGGTAGTAAAGTTGAAAGTGGAAATTTTAGAAAATTTTAAACAACAAATTTCAGAAAAATGTCTGAAATCAAAATTGAACTGAATTCTAATGTAAAACCTGTAATAAAAGGGCCTTTCCACGTTGAACTTGAGCCATATTTCTTACTTAGTTCCTGTCAA</canonical>
            <polymorphic>GGAACGGAAGTTTCTTGTGTTCACATTCGGTGATGATGTCCATCAAGTAGCTATCGTTCTTGCAGTAGTTGAGGCGTTTTTCTAAAATTAGGGACCATTCAAAAATGCAAGTTTCAAAGGAGCCACCTTTTCCAACAGTGTAGCACAACGAGAATTCTTGTTGCTCATGAAGTGATCTCACATTCAACAGACTACAAAGTTCCTGAATCATCTCCTCGACTACTGCAATTGGACGAAGTGTCTGGTTGACACTATGTTCTCGTGAGATGAAGAATGCTTGACGTCTCAGTTGACTTCCGTCCTGTAAAAAAATATTCATCAAACTGTTTACATGAAAACACGATTACCGTAATCTGTTGAACTTCTAGAGCATTCAGTAGAACTTTACGCCCACCGTACTTGAACGTTTGAATCATGTTTGTTTGGCAAATTCGTGCGGTACCTGTTGGAAAAAACATTTGTATTTTTAGAATAATAATAATAATAGTTCAGCATTTTCYCCTCATATGATTTTCGACGTACCATGGTACGGTCTCTGCCAATCGTCGGCATTGTCTCCGAGATATTGAAGAATGTAGGGTTTCAAAGTTAGGCTGGATGGGAAGTAAGCAGTGATAATGGTGAGAAGTCTCCAAGCACGGAGAGAGCTGTTCGGTCTGAAATTTTAGTTTTTTTTCTCTCTGACAGTTTATTTTTAGGGAACTTCAAAACTTTTTGAACCCAGATTTTGATGAAAATTTTTGGATAAGTTGAGAATAGTCTATTTAGACACCTTTAAGGATGTTGGAAAAAATTAATTAATTTAAAAACTTTTTTCAATTTTCAAATCAATCCAAGTCGTGGTAGTAAAGTTGAAAGTGGAAATTTTAGAAAATTTTAAACAACAAATTTCAGAAAAATGTCTGAAATCAAAATTGAACTGAATTCTAATGTAAAACCTGTAATAAAAGGGCCTTTCCACGTTGAACTTGAGCCATATTTCTTACTTAGTTCCTGTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACCGTAATCTGTTGAACTTCT</pcr_primer_p1>
		<pcr_primer_p2>CCTAACTTTGAAACCCTACATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTACCGTAATCTGTTGAACTTCTAGAGCATTCAGTAGAACTTTACGCCCACCGTACTTGAACGTTTGAATCATGTTTGTTTGGCAAATTCGTGCGGTACCTGTTGGAAAAAACATTTGTATTTTTAGAATAATAATAATAATAGTTCAGCATTTTCTCCTCATATGATTTTCGACGTACCATGGTACGGTCTCTGCCAATCGTCGGCATTGTCTCCGAGATATTGAAGAATGTAGGGTTTCAAAGTTAGG</canonical_amplicon>
		<polymorphic_amplicon>TTACCGTAATCTGTTGAACTTCTAGAGCATTCAGTAGAACTTTACGCCCACCGTACTTGAACGTTTGAATCATGTTTGTTTGGCAAATTCGTGCGGTACCTGTTGGAAAAAACATTTGTATTTTTAGAATAATAATAATAATAGTTCAGCATTTTCYCCTCATATGATTTTCGACGTACCATGGTACGGTCTCTGCCAATCGTCGGCATTGTCTCCGAGATATTGAAGAATGTAGGGTTTCAAAGTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25923</snp_id>
        <super_contig>c001800837.Contig1</super_contig>
        <contig_pos>3238</contig_pos>
        <strand></strand>
        <context>CCTCATATGA[T/C]TTTCGACGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTATTTTTAGAATAATAATAATAATAGTTCAGCATTTTCTCCTCATATGA</left_flank>
        <right_flank>TTTCGACGTACCATGGTACGGTCTCTGCCAATCGTCGGCATTGTCTCCGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTGTGTTCACATTCGGTGATGATGTCCATCAAGTAGCTATCGTTCTTGCAGTAGTTGAGGCGTTTTTCTAAAATTAGGGACCATTCAAAAATGCAAGTTTCAAAGGAGCCACCTTTTCCAACAGTGTAGCACAACGAGAATTCTTGTTGCTCATGAAGTGATCTCACATTCAACAGACTACAAAGTTCCTGAATCATCTCCTCGACTACTGCAATTGGACGAAGTGTCTGGTTGACACTATGTTCTCGTGAGATGAAGAATGCTTGACGTCTCAGTTGACTTCCGTCCTGTAAAAAAATATTCATCAAACTGTTTACATGAAAACACGATTACCGTAATCTGTTGAACTTCTAGAGCATTCAGTAGAACTTTACGCCCACCGTACTTGAACGTTTGAATCATGTTTGTTTGGCAAATTCGTGCGGTACCTGTTGGAAAAAACATTTGTATTTTTAGAATAATAATAATAATAGTTCAGCATTTTCTCCTCATATGATTTTCGACGTACCATGGTACGGTCTCTGCCAATCGTCGGCATTGTCTCCGAGATATTGAAGAATGTAGGGTTTCAAAGTTAGGCTGGATGGGAAGTAAGCAGTGATAATGGTGAGAAGTCTCCAAGCACGGAGAGAGCTGTTCGGTCTGAAATTTTAGTTTTTTTTCTCTCTGACAGTTTATTTTTAGGGAACTTCAAAACTTTTTGAACCCAGATTTTGATGAAAATTTTTGGATAAGTTGAGAATAGTCTATTTAGACACCTTTAAGGATGTTGGAAAAAATTAATTAATTTAAAAACTTTTTTCAATTTTCAAATCAATCCAAGTCGTGGTAGTAAAGTTGAAAGTGGAAATTTTAGAAAATTTTAAACAACAAATTTCAGAAAAATGTCTGAAATCAAAATTGAACTGAATTCTAATGTAAAACCTGTAATAAAAGGGCCTTTCCACGTTGAACTTGAGCCATATTTCTTACTTAGTTCCTGTCAAAGATATAAAAA</canonical>
            <polymorphic>TTCTTGTGTTCACATTCGGTGATGATGTCCATCAAGTAGCTATCGTTCTTGCAGTAGTTGAGGCGTTTTTCTAAAATTAGGGACCATTCAAAAATGCAAGTTTCAAAGGAGCCACCTTTTCCAACAGTGTAGCACAACGAGAATTCTTGTTGCTCATGAAGTGATCTCACATTCAACAGACTACAAAGTTCCTGAATCATCTCCTCGACTACTGCAATTGGACGAAGTGTCTGGTTGACACTATGTTCTCGTGAGATGAAGAATGCTTGACGTCTCAGTTGACTTCCGTCCTGTAAAAAAATATTCATCAAACTGTTTACATGAAAACACGATTACCGTAATCTGTTGAACTTCTAGAGCATTCAGTAGAACTTTACGCCCACCGTACTTGAACGTTTGAATCATGTTTGTTTGGCAAATTCGTGCGGTACCTGTTGGAAAAAACATTTGTATTTTTAGAATAATAATAATAATAGTTCAGCATTTTCTCCTCATATGAYTTTCGACGTACCATGGTACGGTCTCTGCCAATCGTCGGCATTGTCTCCGAGATATTGAAGAATGTAGGGTTTCAAAGTTAGGCTGGATGGGAAGTAAGCAGTGATAATGGTGAGAAGTCTCCAAGCACGGAGAGAGCTGTTCGGTCTGAAATTTTAGTTTTTTTTCTCTCTGACAGTTTATTTTTAGGGAACTTCAAAACTTTTTGAACCCAGATTTTGATGAAAATTTTTGGATAAGTTGAGAATAGTCTATTTAGACACCTTTAAGGATGTTGGAAAAAATTAATTAATTTAAAAACTTTTTTCAATTTTCAAATCAATCCAAGTCGTGGTAGTAAAGTTGAAAGTGGAAATTTTAGAAAATTTTAAACAACAAATTTCAGAAAAATGTCTGAAATCAAAATTGAACTGAATTCTAATGTAAAACCTGTAATAAAAGGGCCTTTCCACGTTGAACTTGAGCCATATTTCTTACTTAGTTCCTGTCAAAGATATAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACCGTAATCTGTTGAACTTCT</pcr_primer_p1>
		<pcr_primer_p2>CCTAACTTTGAAACCCTACATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTACCGTAATCTGTTGAACTTCTAGAGCATTCAGTAGAACTTTACGCCCACCGTACTTGAACGTTTGAATCATGTTTGTTTGGCAAATTCGTGCGGTACCTGTTGGAAAAAACATTTGTATTTTTAGAATAATAATAATAATAGTTCAGCATTTTCTCCTCATATGATTTTCGACGTACCATGGTACGGTCTCTGCCAATCGTCGGCATTGTCTCCGAGATATTGAAGAATGTAGGGTTTCAAAGTTAGG</canonical_amplicon>
		<polymorphic_amplicon>TTACCGTAATCTGTTGAACTTCTAGAGCATTCAGTAGAACTTTACGCCCACCGTACTTGAACGTTTGAATCATGTTTGTTTGGCAAATTCGTGCGGTACCTGTTGGAAAAAACATTTGTATTTTTAGAATAATAATAATAATAGTTCAGCATTTTCTCCTCATATGAYTTTCGACGTACCATGGTACGGTCTCTGCCAATCGTCGGCATTGTCTCCGAGATATTGAAGAATGTAGGGTTTCAAAGTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25924</snp_id>
        <super_contig>c001800837.Contig1</super_contig>
        <contig_pos>3287</contig_pos>
        <strand></strand>
        <context>CATTGTCTCC[G/A]AGATATTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTTTCGACGTACCATGGTACGGTCTCTGCCAATCGTCGGCATTGTCTCC</left_flank>
        <right_flank>AGATATTGAAGAATGTAGGGTTTCAAAGTTAGGCTGGATGGGAAGTAAGC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCAGTAGTTGAGGCGTTTTTCTAAAATTAGGGACCATTCAAAAATGCAAGTTTCAAAGGAGCCACCTTTTCCAACAGTGTAGCACAACGAGAATTCTTGTTGCTCATGAAGTGATCTCACATTCAACAGACTACAAAGTTCCTGAATCATCTCCTCGACTACTGCAATTGGACGAAGTGTCTGGTTGACACTATGTTCTCGTGAGATGAAGAATGCTTGACGTCTCAGTTGACTTCCGTCCTGTAAAAAAATATTCATCAAACTGTTTACATGAAAACACGATTACCGTAATCTGTTGAACTTCTAGAGCATTCAGTAGAACTTTACGCCCACCGTACTTGAACGTTTGAATCATGTTTGTTTGGCAAATTCGTGCGGTACCTGTTGGAAAAAACATTTGTATTTTTAGAATAATAATAATAATAGTTCAGCATTTTCTCCTCATATGATTTTCGACGTACCATGGTACGGTCTCTGCCAATCGTCGGCATTGTCTCCGAGATATTGAAGAATGTAGGGTTTCAAAGTTAGGCTGGATGGGAAGTAAGCAGTGATAATGGTGAGAAGTCTCCAAGCACGGAGAGAGCTGTTCGGTCTGAAATTTTAGTTTTTTTTCTCTCTGACAGTTTATTTTTAGGGAACTTCAAAACTTTTTGAACCCAGATTTTGATGAAAATTTTTGGATAAGTTGAGAATAGTCTATTTAGACACCTTTAAGGATGTTGGAAAAAATTAATTAATTTAAAAACTTTTTTCAATTTTCAAATCAATCCAAGTCGTGGTAGTAAAGTTGAAAGTGGAAATTTTAGAAAATTTTAAACAACAAATTTCAGAAAAATGTCTGAAATCAAAATTGAACTGAATTCTAATGTAAAACCTGTAATAAAAGGGCCTTTCCACGTTGAACTTGAGCCATATTTCTTACTTAGTTCCTGTCAAAGATATAAAAAAGTTGTCAACTGATAAACTGCTTATCATTATATTATAAAAGTTTTGTCA</canonical>
            <polymorphic>TGCAGTAGTTGAGGCGTTTTTCTAAAATTAGGGACCATTCAAAAATGCAAGTTTCAAAGGAGCCACCTTTTCCAACAGTGTAGCACAACGAGAATTCTTGTTGCTCATGAAGTGATCTCACATTCAACAGACTACAAAGTTCCTGAATCATCTCCTCGACTACTGCAATTGGACGAAGTGTCTGGTTGACACTATGTTCTCGTGAGATGAAGAATGCTTGACGTCTCAGTTGACTTCCGTCCTGTAAAAAAATATTCATCAAACTGTTTACATGAAAACACGATTACCGTAATCTGTTGAACTTCTAGAGCATTCAGTAGAACTTTACGCCCACCGTACTTGAACGTTTGAATCATGTTTGTTTGGCAAATTCGTGCGGTACCTGTTGGAAAAAACATTTGTATTTTTAGAATAATAATAATAATAGTTCAGCATTTTCTCCTCATATGATTTTCGACGTACCATGGTACGGTCTCTGCCAATCGTCGGCATTGTCTCCRAGATATTGAAGAATGTAGGGTTTCAAAGTTAGGCTGGATGGGAAGTAAGCAGTGATAATGGTGAGAAGTCTCCAAGCACGGAGAGAGCTGTTCGGTCTGAAATTTTAGTTTTTTTTCTCTCTGACAGTTTATTTTTAGGGAACTTCAAAACTTTTTGAACCCAGATTTTGATGAAAATTTTTGGATAAGTTGAGAATAGTCTATTTAGACACCTTTAAGGATGTTGGAAAAAATTAATTAATTTAAAAACTTTTTTCAATTTTCAAATCAATCCAAGTCGTGGTAGTAAAGTTGAAAGTGGAAATTTTAGAAAATTTTAAACAACAAATTTCAGAAAAATGTCTGAAATCAAAATTGAACTGAATTCTAATGTAAAACCTGTAATAAAAGGGCCTTTCCACGTTGAACTTGAGCCATATTTCTTACTTAGTTCCTGTCAAAGATATAAAAAAGTTGTCAACTGATAAACTGCTTATCATTATATTATAAAAGTTTTGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>499 211 156 99 24 11</canonical_bands>
                <polymorphic_bands>598 211 156 24 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTACTTGAACGTTTGAATCATGT</pcr_primer_p1>
		<pcr_primer_p2>GAGACTTCTCACCATTATCACTG</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GTACTTGAACGTTTGAATCATGTTTGTTTGGCAAATTCGTGCGGTACCTGTTGGAAAAAACATTTGTATTTTTAGAATAATAATAATAATAGTTCAGCATTTTCTCCTCATATGATTTTCGACGTACCATGGTACGGTCTCTGCCAATCGTCGGCATTGTCTCCGAGATATTGAAGAATGTAGGGTTTCAAAGTTAGGCTGGATGGGAAGTAAGCAGTGATAATGGTGAGAAGTCTC</canonical_amplicon>
		<polymorphic_amplicon>GTACTTGAACGTTTGAATCATGTTTGTTTGGCAAATTCGTGCGGTACCTGTTGGAAAAAACATTTGTATTTTTAGAATAATAATAATAATAGTTCAGCATTTTCTCCTCATATGATTTTCGACGTACCATGGTACGGTCTCTGCCAATCGTCGGCATTGTCTCCRAGATATTGAAGAATGTAGGGTTTCAAAGTTAGGCTGGATGGGAAGTAAGCAGTGATAATGGTGAGAAGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25925</snp_id>
        <super_contig>c001800837.Contig1</super_contig>
        <contig_pos>3387</contig_pos>
        <strand></strand>
        <context>GTTCGGTCTG[A/T]AATTTTAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGTGATAATGGTGAGAAGTCTCCAAGCACGGAGAGAGCTGTTCGGTCTG</left_flank>
        <right_flank>AATTTTAGTTTTTTTTCTCTCTGACAGTTTATTTTTAGGGAACTTCAAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCTCATGAAGTGATCTCACATTCAACAGACTACAAAGTTCCTGAATCATCTCCTCGACTACTGCAATTGGACGAAGTGTCTGGTTGACACTATGTTCTCGTGAGATGAAGAATGCTTGACGTCTCAGTTGACTTCCGTCCTGTAAAAAAATATTCATCAAACTGTTTACATGAAAACACGATTACCGTAATCTGTTGAACTTCTAGAGCATTCAGTAGAACTTTACGCCCACCGTACTTGAACGTTTGAATCATGTTTGTTTGGCAAATTCGTGCGGTACCTGTTGGAAAAAACATTTGTATTTTTAGAATAATAATAATAATAGTTCAGCATTTTCTCCTCATATGATTTTCGACGTACCATGGTACGGTCTCTGCCAATCGTCGGCATTGTCTCCGAGATATTGAAGAATGTAGGGTTTCAAAGTTAGGCTGGATGGGAAGTAAGCAGTGATAATGGTGAGAAGTCTCCAAGCACGGAGAGAGCTGTTCGGTCTGAAATTTTAGTTTTTTTTCTCTCTGACAGTTTATTTTTAGGGAACTTCAAAACTTTTTGAACCCAGATTTTGATGAAAATTTTTGGATAAGTTGAGAATAGTCTATTTAGACACCTTTAAGGATGTTGGAAAAAATTAATTAATTTAAAAACTTTTTTCAATTTTCAAATCAATCCAAGTCGTGGTAGTAAAGTTGAAAGTGGAAATTTTAGAAAATTTTAAACAACAAATTTCAGAAAAATGTCTGAAATCAAAATTGAACTGAATTCTAATGTAAAACCTGTAATAAAAGGGCCTTTCCACGTTGAACTTGAGCCATATTTCTTACTTAGTTCCTGTCAAAGATATAAAAAAGTTGTCAACTGATAAACTGCTTATCATTATATTATAAAAGTTTTGTCAGTTGACACATTTTTTATATCTCTTCTAAGAACCGCGATAAATGAGCCCAAATTGGGGCCCTTCTATTACAGGTTTCACTGTATAACAAAACATATTTGAC</canonical>
            <polymorphic>TTGCTCATGAAGTGATCTCACATTCAACAGACTACAAAGTTCCTGAATCATCTCCTCGACTACTGCAATTGGACGAAGTGTCTGGTTGACACTATGTTCTCGTGAGATGAAGAATGCTTGACGTCTCAGTTGACTTCCGTCCTGTAAAAAAATATTCATCAAACTGTTTACATGAAAACACGATTACCGTAATCTGTTGAACTTCTAGAGCATTCAGTAGAACTTTACGCCCACCGTACTTGAACGTTTGAATCATGTTTGTTTGGCAAATTCGTGCGGTACCTGTTGGAAAAAACATTTGTATTTTTAGAATAATAATAATAATAGTTCAGCATTTTCTCCTCATATGATTTTCGACGTACCATGGTACGGTCTCTGCCAATCGTCGGCATTGTCTCCGAGATATTGAAGAATGTAGGGTTTCAAAGTTAGGCTGGATGGGAAGTAAGCAGTGATAATGGTGAGAAGTCTCCAAGCACGGAGAGAGCTGTTCGGTCTGWAATTTTAGTTTTTTTTCTCTCTGACAGTTTATTTTTAGGGAACTTCAAAACTTTTTGAACCCAGATTTTGATGAAAATTTTTGGATAAGTTGAGAATAGTCTATTTAGACACCTTTAAGGATGTTGGAAAAAATTAATTAATTTAAAAACTTTTTTCAATTTTCAAATCAATCCAAGTCGTGGTAGTAAAGTTGAAAGTGGAAATTTTAGAAAATTTTAAACAACAAATTTCAGAAAAATGTCTGAAATCAAAATTGAACTGAATTCTAATGTAAAACCTGTAATAAAAGGGCCTTTCCACGTTGAACTTGAGCCATATTTCTTACTTAGTTCCTGTCAAAGATATAAAAAAGTTGTCAACTGATAAACTGCTTATCATTATATTATAAAAGTTTTGTCAGTTGACACATTTTTTATATCTCTTCTAAGAACCGCGATAAATGAGCCCAAATTGGGGCCCTTCTATTACAGGTTTCACTGTATAACAAAACATATTTGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>268 238 232 127 75 36 14 10</canonical_bands>
                <polymorphic_bands>307 268 238 127 36 14 10</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>399 256 211 99 24 11</canonical_bands>
                <polymorphic_bands>399 256 211 123 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCAGTGATAATGGTGAGAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTCAACTTTACTACCACGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGCAGTGATAATGGTGAGAAGTCTCCAAGCACGGAGAGAGCTGTTCGGTCTGAAATTTTAGTTTTTTTTCTCTCTGACAGTTTATTTTTAGGGAACTTCAAAACTTTTTGAACCCAGATTTTGATGAAAATTTTTGGATAAGTTGAGAATAGTCTATTTAGACACCTTTAAGGATGTTGGAAAAAATTAATTAATTTAAAAACTTTTTTCAATTTTCAAATCAATCCAAGTCGTGGTAGTAAAGTTGAA</canonical_amplicon>
		<polymorphic_amplicon>AGCAGTGATAATGGTGAGAAGTCTCCAAGCACGGAGAGAGCTGTTCGGTCTGWAATTTTAGTTTTTTTTCTCTCTGACAGTTTATTTTTAGGGAACTTCAAAACTTTTTGAACCCAGATTTTGATGAAAATTTTTGGATAAGTTGAGAATAGTCTATTTAGACACCTTTAAGGATGTTGGAAAAAATTAATTAATTTAAAAACTTTTTTCAATTTTCAAATCAATCCAAGTCGTGGTAGTAAAGTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25926</snp_id>
        <super_contig>c001800837.Contig1</super_contig>
        <contig_pos>3414</contig_pos>
        <strand></strand>
        <context>CTCTCTGACA[G/A]TTTATTTTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CACGGAGAGAGCTGTTCGGTCTGAAATTTTAGTTTTTTTTCTCTCTGACA</left_flank>
        <right_flank>TTTATTTTTAGGGAACTTCAAAACTTTTTGAACCCAGATTTTGATGAAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGACTACAAAGTTCCTGAATCATCTCCTCGACTACTGCAATTGGACGAAGTGTCTGGTTGACACTATGTTCTCGTGAGATGAAGAATGCTTGACGTCTCAGTTGACTTCCGTCCTGTAAAAAAATATTCATCAAACTGTTTACATGAAAACACGATTACCGTAATCTGTTGAACTTCTAGAGCATTCAGTAGAACTTTACGCCCACCGTACTTGAACGTTTGAATCATGTTTGTTTGGCAAATTCGTGCGGTACCTGTTGGAAAAAACATTTGTATTTTTAGAATAATAATAATAATAGTTCAGCATTTTCTCCTCATATGATTTTCGACGTACCATGGTACGGTCTCTGCCAATCGTCGGCATTGTCTCCGAGATATTGAAGAATGTAGGGTTTCAAAGTTAGGCTGGATGGGAAGTAAGCAGTGATAATGGTGAGAAGTCTCCAAGCACGGAGAGAGCTGTTCGGTCTGAAATTTTAGTTTTTTTTCTCTCTGACAGTTTATTTTTAGGGAACTTCAAAACTTTTTGAACCCAGATTTTGATGAAAATTTTTGGATAAGTTGAGAATAGTCTATTTAGACACCTTTAAGGATGTTGGAAAAAATTAATTAATTTAAAAACTTTTTTCAATTTTCAAATCAATCCAAGTCGTGGTAGTAAAGTTGAAAGTGGAAATTTTAGAAAATTTTAAACAACAAATTTCAGAAAAATGTCTGAAATCAAAATTGAACTGAATTCTAATGTAAAACCTGTAATAAAAGGGCCTTTCCACGTTGAACTTGAGCCATATTTCTTACTTAGTTCCTGTCAAAGATATAAAAAAGTTGTCAACTGATAAACTGCTTATCATTATATTATAAAAGTTTTGTCAGTTGACACATTTTTTATATCTCTTCTAAGAACCGCGATAAATGAGCCCAAATTGGGGCCCTTCTATTACAGGTTTCACTGTATAACAAAACATATTTGACGTTCGAAAATTCCATCATTCTTAACCC</canonical>
            <polymorphic>CAGACTACAAAGTTCCTGAATCATCTCCTCGACTACTGCAATTGGACGAAGTGTCTGGTTGACACTATGTTCTCGTGAGATGAAGAATGCTTGACGTCTCAGTTGACTTCCGTCCTGTAAAAAAATATTCATCAAACTGTTTACATGAAAACACGATTACCGTAATCTGTTGAACTTCTAGAGCATTCAGTAGAACTTTACGCCCACCGTACTTGAACGTTTGAATCATGTTTGTTTGGCAAATTCGTGCGGTACCTGTTGGAAAAAACATTTGTATTTTTAGAATAATAATAATAATAGTTCAGCATTTTCTCCTCATATGATTTTCGACGTACCATGGTACGGTCTCTGCCAATCGTCGGCATTGTCTCCGAGATATTGAAGAATGTAGGGTTTCAAAGTTAGGCTGGATGGGAAGTAAGCAGTGATAATGGTGAGAAGTCTCCAAGCACGGAGAGAGCTGTTCGGTCTGAAATTTTAGTTTTTTTTCTCTCTGACARTTTATTTTTAGGGAACTTCAAAACTTTTTGAACCCAGATTTTGATGAAAATTTTTGGATAAGTTGAGAATAGTCTATTTAGACACCTTTAAGGATGTTGGAAAAAATTAATTAATTTAAAAACTTTTTTCAATTTTCAAATCAATCCAAGTCGTGGTAGTAAAGTTGAAAGTGGAAATTTTAGAAAATTTTAAACAACAAATTTCAGAAAAATGTCTGAAATCAAAATTGAACTGAATTCTAATGTAAAACCTGTAATAAAAGGGCCTTTCCACGTTGAACTTGAGCCATATTTCTTACTTAGTTCCTGTCAAAGATATAAAAAAGTTGTCAACTGATAAACTGCTTATCATTATATTATAAAAGTTTTGTCAGTTGACACATTTTTTATATCTCTTCTAAGAACCGCGATAAATGAGCCCAAATTGGGGCCCTTCTATTACAGGTTTCACTGTATAACAAAACATATTTGACGTTCGAAAATTCCATCATTCTTAACCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>453 155 138 136 48 47 23</canonical_bands>
                <polymorphic_bands>608 138 136 48 47 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCAGTGATAATGGTGAGAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTCAACTTTACTACCACGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGCAGTGATAATGGTGAGAAGTCTCCAAGCACGGAGAGAGCTGTTCGGTCTGAAATTTTAGTTTTTTTTCTCTCTGACAGTTTATTTTTAGGGAACTTCAAAACTTTTTGAACCCAGATTTTGATGAAAATTTTTGGATAAGTTGAGAATAGTCTATTTAGACACCTTTAAGGATGTTGGAAAAAATTAATTAATTTAAAAACTTTTTTCAATTTTCAAATCAATCCAAGTCGTGGTAGTAAAGTTGAA</canonical_amplicon>
		<polymorphic_amplicon>AGCAGTGATAATGGTGAGAAGTCTCCAAGCACGGAGAGAGCTGTTCGGTCTGAAATTTTAGTTTTTTTTCTCTCTGACARTTTATTTTTAGGGAACTTCAAAACTTTTTGAACCCAGATTTTGATGAAAATTTTTGGATAAGTTGAGAATAGTCTATTTAGACACCTTTAAGGATGTTGGAAAAAATTAATTAATTTAAAAACTTTTTTCAATTTTCAAATCAATCCAAGTCGTGGTAGTAAAGTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25927</snp_id>
        <super_contig>c001800837.Contig1</super_contig>
        <contig_pos>3500</contig_pos>
        <strand></strand>
        <context>ATTTAGACAC[C/T]TTTAAGGATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGATTTTGATGAAAATTTTTGGATAAGTTGAGAATAGTCTATTTAGACAC</left_flank>
        <right_flank>TTTAAGGATGTTGGAAAAAATTAATTAATTTAAAAACTTTTTTCAATTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCTTGACGTCTCAGTTGACTTCCGTCCTGTAAAAAAATATTCATCAAACTGTTTACATGAAAACACGATTACCGTAATCTGTTGAACTTCTAGAGCATTCAGTAGAACTTTACGCCCACCGTACTTGAACGTTTGAATCATGTTTGTTTGGCAAATTCGTGCGGTACCTGTTGGAAAAAACATTTGTATTTTTAGAATAATAATAATAATAGTTCAGCATTTTCTCCTCATATGATTTTCGACGTACCATGGTACGGTCTCTGCCAATCGTCGGCATTGTCTCCGAGATATTGAAGAATGTAGGGTTTCAAAGTTAGGCTGGATGGGAAGTAAGCAGTGATAATGGTGAGAAGTCTCCAAGCACGGAGAGAGCTGTTCGGTCTGAAATTTTAGTTTTTTTTCTCTCTGACAGTTTATTTTTAGGGAACTTCAAAACTTTTTGAACCCAGATTTTGATGAAAATTTTTGGATAAGTTGAGAATAGTCTATTTAGACACCTTTAAGGATGTTGGAAAAAATTAATTAATTTAAAAACTTTTTTCAATTTTCAAATCAATCCAAGTCGTGGTAGTAAAGTTGAAAGTGGAAATTTTAGAAAATTTTAAACAACAAATTTCAGAAAAATGTCTGAAATCAAAATTGAACTGAATTCTAATGTAAAACCTGTAATAAAAGGGCCTTTCCACGTTGAACTTGAGCCATATTTCTTACTTAGTTCCTGTCAAAGATATAAAAAAGTTGTCAACTGATAAACTGCTTATCATTATATTATAAAAGTTTTGTCAGTTGACACATTTTTTATATCTCTTCTAAGAACCGCGATAAATGAGCCCAAATTGGGGCCCTTCTATTACAGGTTTCACTGTATAACAAAACATATTTGACGTTCGAAAATTCCATCATTCTTAACCCCATCCAAAAATTTTCATCAAAATCTGGTTCGACAAGATGTTTAGGTGCCCAAACTTCTCTCACTTGTTAGATGTGTTTGAGGTAGT</canonical>
            <polymorphic>ATGCTTGACGTCTCAGTTGACTTCCGTCCTGTAAAAAAATATTCATCAAACTGTTTACATGAAAACACGATTACCGTAATCTGTTGAACTTCTAGAGCATTCAGTAGAACTTTACGCCCACCGTACTTGAACGTTTGAATCATGTTTGTTTGGCAAATTCGTGCGGTACCTGTTGGAAAAAACATTTGTATTTTTAGAATAATAATAATAATAGTTCAGCATTTTCTCCTCATATGATTTTCGACGTACCATGGTACGGTCTCTGCCAATCGTCGGCATTGTCTCCGAGATATTGAAGAATGTAGGGTTTCAAAGTTAGGCTGGATGGGAAGTAAGCAGTGATAATGGTGAGAAGTCTCCAAGCACGGAGAGAGCTGTTCGGTCTGAAATTTTAGTTTTTTTTCTCTCTGACAGTTTATTTTTAGGGAACTTCAAAACTTTTTGAACCCAGATTTTGATGAAAATTTTTGGATAAGTTGAGAATAGTCTATTTAGACACYTTTAAGGATGTTGGAAAAAATTAATTAATTTAAAAACTTTTTTCAATTTTCAAATCAATCCAAGTCGTGGTAGTAAAGTTGAAAGTGGAAATTTTAGAAAATTTTAAACAACAAATTTCAGAAAAATGTCTGAAATCAAAATTGAACTGAATTCTAATGTAAAACCTGTAATAAAAGGGCCTTTCCACGTTGAACTTGAGCCATATTTCTTACTTAGTTCCTGTCAAAGATATAAAAAAGTTGTCAACTGATAAACTGCTTATCATTATATTATAAAAGTTTTGTCAGTTGACACATTTTTTATATCTCTTCTAAGAACCGCGATAAATGAGCCCAAATTGGGGCCCTTCTATTACAGGTTTCACTGTATAACAAAACATATTTGACGTTCGAAAATTCCATCATTCTTAACCCCATCCAAAAATTTTCATCAAAATCTGGTTCGACAAGATGTTTAGGTGCCCAAACTTCTCTCACTTGTTAGATGTGTTTGAGGTAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCAGTGATAATGGTGAGAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTCAACTTTACTACCACGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGCAGTGATAATGGTGAGAAGTCTCCAAGCACGGAGAGAGCTGTTCGGTCTGAAATTTTAGTTTTTTTTCTCTCTGACAGTTTATTTTTAGGGAACTTCAAAACTTTTTGAACCCAGATTTTGATGAAAATTTTTGGATAAGTTGAGAATAGTCTATTTAGACACCTTTAAGGATGTTGGAAAAAATTAATTAATTTAAAAACTTTTTTCAATTTTCAAATCAATCCAAGTCGTGGTAGTAAAGTTGAA</canonical_amplicon>
		<polymorphic_amplicon>AGCAGTGATAATGGTGAGAAGTCTCCAAGCACGGAGAGAGCTGTTCGGTCTGAAATTTTAGTTTTTTTTCTCTCTGACAGTTTATTTTTAGGGAACTTCAAAACTTTTTGAACCCAGATTTTGATGAAAATTTTTGGATAAGTTGAGAATAGTCTATTTAGACACYTTTAAGGATGTTGGAAAAAATTAATTAATTTAAAAACTTTTTTCAATTTTCAAATCAATCCAAGTCGTGGTAGTAAAGTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25928</snp_id>
        <super_contig>c001800837.Contig1</super_contig>
        <contig_pos>3612</contig_pos>
        <strand></strand>
        <context>TTTTAAACAA[C/G]AAATTTCAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAGTCGTGGTAGTAAAGTTGAAAGTGGAAATTTTAGAAAATTTTAAACAA</left_flank>
        <right_flank>AAATTTCAGAAAAATGTCTGAAATCAAAATTGAACTGAATTCTAATGTAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACGCCCACCGTACTTGAACGTTTGAATCATGTTTGTTTGGCAAATTCGTGCGGTACCTGTTGGAAAAAACATTTGTATTTTTAGAATAATAATAATAATAGTTCAGCATTTTCTCCTCATATGATTTTCGACGTACCATGGTACGGTCTCTGCCAATCGTCGGCATTGTCTCCGAGATATTGAAGAATGTAGGGTTTCAAAGTTAGGCTGGATGGGAAGTAAGCAGTGATAATGGTGAGAAGTCTCCAAGCACGGAGAGAGCTGTTCGGTCTGAAATTTTAGTTTTTTTTCTCTCTGACAGTTTATTTTTAGGGAACTTCAAAACTTTTTGAACCCAGATTTTGATGAAAATTTTTGGATAAGTTGAGAATAGTCTATTTAGACACCTTTAAGGATGTTGGAAAAAATTAATTAATTTAAAAACTTTTTTCAATTTTCAAATCAATCCAAGTCGTGGTAGTAAAGTTGAAAGTGGAAATTTTAGAAAATTTTAAACAACAAATTTCAGAAAAATGTCTGAAATCAAAATTGAACTGAATTCTAATGTAAAACCTGTAATAAAAGGGCCTTTCCACGTTGAACTTGAGCCATATTTCTTACTTAGTTCCTGTCAAAGATATAAAAAAGTTGTCAACTGATAAACTGCTTATCATTATATTATAAAAGTTTTGTCAGTTGACACATTTTTTATATCTCTTCTAAGAACCGCGATAAATGAGCCCAAATTGGGGCCCTTCTATTACAGGTTTCACTGTATAACAAAACATATTTGACGTTCGAAAATTCCATCATTCTTAACCCCATCCAAAAATTTTCATCAAAATCTGGTTCGACAAGATGTTTAGGTGCCCAAACTTCTCTCACTTGTTAGATGTGTTTGAGGTAGTTTGCTTGATAAGCTGACAATAGACTTCATCTCTCAGTGTTGGCTGTCTGTGGCAGATGATCAAAACCTTGAAGACCACATCAGTCATCGATTCAGATTTCTTCAAAGGCTCA</canonical>
            <polymorphic>TACGCCCACCGTACTTGAACGTTTGAATCATGTTTGTTTGGCAAATTCGTGCGGTACCTGTTGGAAAAAACATTTGTATTTTTAGAATAATAATAATAATAGTTCAGCATTTTCTCCTCATATGATTTTCGACGTACCATGGTACGGTCTCTGCCAATCGTCGGCATTGTCTCCGAGATATTGAAGAATGTAGGGTTTCAAAGTTAGGCTGGATGGGAAGTAAGCAGTGATAATGGTGAGAAGTCTCCAAGCACGGAGAGAGCTGTTCGGTCTGAAATTTTAGTTTTTTTTCTCTCTGACAGTTTATTTTTAGGGAACTTCAAAACTTTTTGAACCCAGATTTTGATGAAAATTTTTGGATAAGTTGAGAATAGTCTATTTAGACACCTTTAAGGATGTTGGAAAAAATTAATTAATTTAAAAACTTTTTTCAATTTTCAAATCAATCCAAGTCGTGGTAGTAAAGTTGAAAGTGGAAATTTTAGAAAATTTTAAACAASAAATTTCAGAAAAATGTCTGAAATCAAAATTGAACTGAATTCTAATGTAAAACCTGTAATAAAAGGGCCTTTCCACGTTGAACTTGAGCCATATTTCTTACTTAGTTCCTGTCAAAGATATAAAAAAGTTGTCAACTGATAAACTGCTTATCATTATATTATAAAAGTTTTGTCAGTTGACACATTTTTTATATCTCTTCTAAGAACCGCGATAAATGAGCCCAAATTGGGGCCCTTCTATTACAGGTTTCACTGTATAACAAAACATATTTGACGTTCGAAAATTCCATCATTCTTAACCCCATCCAAAAATTTTCATCAAAATCTGGTTCGACAAGATGTTTAGGTGCCCAAACTTCTCTCACTTGTTAGATGTGTTTGAGGTAGTTTGCTTGATAAGCTGACAATAGACTTCATCTCTCAGTGTTGGCTGTCTGTGGCAGATGATCAAAACCTTGAAGACCACATCAGTCATCGATTCAGATTTCTTCAAAGGCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGTCGTGGTAGTAAAGTTGA</pcr_primer_p1>
		<pcr_primer_p2>CGAACGTCAAATATGTTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>332</pcr_amplicon_size>
		<canonical_amplicon>CAAGTCGTGGTAGTAAAGTTGAAAGTGGAAATTTTAGAAAATTTTAAACAACAAATTTCAGAAAAATGTCTGAAATCAAAATTGAACTGAATTCTAATGTAAAACCTGTAATAAAAGGGCCTTTCCACGTTGAACTTGAGCCATATTTCTTACTTAGTTCCTGTCAAAGATATAAAAAAGTTGTCAACTGATAAACTGCTTATCATTATATTATAAAAGTTTTGTCAGTTGACACATTTTTTATATCTCTTCTAAGAACCGCGATAAATGAGCCCAAATTGGGGCCCTTCTATTACAGGTTTCACTGTATAACAAAACATATTTGACGTTCG</canonical_amplicon>
		<polymorphic_amplicon>CAAGTCGTGGTAGTAAAGTTGAAAGTGGAAATTTTAGAAAATTTTAAACAASAAATTTCAGAAAAATGTCTGAAATCAAAATTGAACTGAATTCTAATGTAAAACCTGTAATAAAAGGGCCTTTCCACGTTGAACTTGAGCCATATTTCTTACTTAGTTCCTGTCAAAGATATAAAAAAGTTGTCAACTGATAAACTGCTTATCATTATATTATAAAAGTTTTGTCAGTTGACACATTTTTTATATCTCTTCTAAGAACCGCGATAAATGAGCCCAAATTGGGGCCCTTCTATTACAGGTTTCACTGTATAACAAAACATATTTGACGTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25929</snp_id>
        <super_contig>c001800837.Contig1</super_contig>
        <contig_pos>3657</contig_pos>
        <strand>+</strand>
        <context>CTGAATTCTA[A/C]Tgtaaaacct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACAACAAATTTCAGAAAAATGTCTGAAATCAAAATTGAACTGAATTCTA</left_flank>
        <right_flank>TGTAAAACCTGTAATAAAAGGGCCTTTCCACGTTGAACTTGAGCCATATT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGTGCGGTACCTGTTGGAAAAAACATTTGTATTTTTAGAATAATAATAATAATAGTTCAGCATTTTCTCCTCATATGATTTTCGACGTACCATGGTACGGTCTCTGCCAATCGTCGGCATTGTCTCCGAGATATTGAAGAATGTAGGGTTTCAAAGTTAGGCTGGATGGGAAGTAAGCAGTGATAATGGTGAGAAGTCTCCAAGCACGGAGAGAGCTGTTCGGTCTGAAATTTTAGTTTTTTTTCTCTCTGACAGTTTATTTTTAGGGAACTTCAAAACTTTTTGAACCCAGATTTTGATGAAAATTTTTGGATAAGTTGAGAATAGTCTATTTAGACACCTTTAAGGATGTTGGAAAAAATTAATTAATTTAAAAACTTTTTTCAATTTTCAAATCAATCCAAGTCGTGGTAGTAAAGTTGAAAGTGGAAATTTTAGAAAATTTTAAACAACAAATTTCAGAAAAATGTCTGAAATCAAAATTGAACTGAATTCTAATGTAAAACCTGTAATAAAAGGGCCTTTCCACGTTGAACTTGAGCCATATTTCTTACTTAGTTCCTGTCAAAGATATAAAAAAGTTGTCAACTGATAAACTGCTTATCATTATATTATAAAAGTTTTGTCAGTTGACACATTTTTTATATCTCTTCTAAGAACCGCGATAAATGAGCCCAAATTGGGGCCCTTCTATTACAGGTTTCACTGTATAACAAAACATATTTGACGTTCGAAAATTCCATCATTCTTAACCCCATCCAAAAATTTTCATCAAAATCTGGTTCGACAAGATGTTTAGGTGCCCAAACTTCTCTCACTTGTTAGATGTGTTTGAGGTAGTTTGCTTGATAAGCTGACAATAGACTTCATCTCTCAGTGTTGGCTGTCTGTGGCAGATGATCAAAACCTTGAAGACCACATCAGTCATCGATTCAGATTTCTTCAAAGGCTCATCTCCCATAAATTTCATGATGGCATGGAATGTCTCCACTGCGTAT</canonical>
            <polymorphic>TTCGTGCGGTACCTGTTGGAAAAAACATTTGTATTTTTAGAATAATAATAATAATAGTTCAGCATTTTCTCCTCATATGATTTTCGACGTACCATGGTACGGTCTCTGCCAATCGTCGGCATTGTCTCCGAGATATTGAAGAATGTAGGGTTTCAAAGTTAGGCTGGATGGGAAGTAAGCAGTGATAATGGTGAGAAGTCTCCAAGCACGGAGAGAGCTGTTCGGTCTGAAATTTTAGTTTTTTTTCTCTCTGACAGTTTATTTTTAGGGAACTTCAAAACTTTTTGAACCCAGATTTTGATGAAAATTTTTGGATAAGTTGAGAATAGTCTATTTAGACACCTTTAAGGATGTTGGAAAAAATTAATTAATTTAAAAACTTTTTTCAATTTTCAAATCAATCCAAGTCGTGGTAGTAAAGTTGAAAGTGGAAATTTTAGAAAATTTTAAACAACAAATTTCAGAAAAATGTCTGAAATCAAAATTGAACTGAATTCTAMTGTAAAACCTGTAATAAAAGGGCCTTTCCACGTTGAACTTGAGCCATATTTCTTACTTAGTTCCTGTCAAAGATATAAAAAAGTTGTCAACTGATAAACTGCTTATCATTATATTATAAAAGTTTTGTCAGTTGACACATTTTTTATATCTCTTCTAAGAACCGCGATAAATGAGCCCAAATTGGGGCCCTTCTATTACAGGTTTCACTGTATAACAAAACATATTTGACGTTCGAAAATTCCATCATTCTTAACCCCATCCAAAAATTTTCATCAAAATCTGGTTCGACAAGATGTTTAGGTGCCCAAACTTCTCTCACTTGTTAGATGTGTTTGAGGTAGTTTGCTTGATAAGCTGACAATAGACTTCATCTCTCAGTGTTGGCTGTCTGTGGCAGATGATCAAAACCTTGAAGACCACATCAGTCATCGATTCAGATTTCTTCAAAGGCTCATCTCCCATAAATTTCATGATGGCATGGAATGTCTCCACTGCGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGTTGAAAGTGGAAATTTTAGA</pcr_primer_p1>
		<pcr_primer_p2>CGAACGTCAAATATGTTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>318</pcr_amplicon_size>
		<canonical_amplicon>AAAGTTGAAAGTGGAAATTTTAGAAAATTTTAAACAACAAATTTCAGAAAAATGTCTGAAATCAAAATTGAACTGAATTCTAATGTAAAACCTGTAATAAAAGGGCCTTTCCACGTTGAACTTGAGCCATATTTCTTACTTAGTTCCTGTCAAAGATATAAAAAAGTTGTCAACTGATAAACTGCTTATCATTATATTATAAAAGTTTTGTCAGTTGACACATTTTTTATATCTCTTCTAAGAACCGCGATAAATGAGCCCAAATTGGGGCCCTTCTATTACAGGTTTCACTGTATAACAAAACATATTTGACGTTCG</canonical_amplicon>
		<polymorphic_amplicon>AAAGTTGAAAGTGGAAATTTTAGAAAATTTTAAACAACAAATTTCAGAAAAATGTCTGAAATCAAAATTGAACTGAATTCTAMTGTAAAACCTGTAATAAAAGGGCCTTTCCACGTTGAACTTGAGCCATATTTCTTACTTAGTTCCTGTCAAAGATATAAAAAAGTTGTCAACTGATAAACTGCTTATCATTATATTATAAAAGTTTTGTCAGTTGACACATTTTTTATATCTCTTCTAAGAACCGCGATAAATGAGCCCAAATTGGGGCCCTTCTATTACAGGTTTCACTGTATAACAAAACATATTTGACGTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25930</snp_id>
        <super_contig>c001800837.Contig1</super_contig>
        <contig_pos>5697</contig_pos>
        <strand></strand>
        <context>taaacgcgaa[G/A]aaacaggttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTATTTCTGAAATTTTCTTTTTCATGCCTGTTTCCGTCTTTAAACGCGAA</left_flank>
        <right_flank>AAACAGGTTTCTTTCAGAGTTCGTTACATATCTGAAAAACTAGGAATTTT</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACTGTTTGTTGAACAAGAAAACAATCGTATATTTTAATGAATAATAAAAAGAAACAAACCTCATAGACTTGATTGAAATATAAGGGCCATAATCTGGCTCTTTCAATGATGGCAACCTTAACGTCTGGATGAATGTTTGATTGGTTGTTCAGGTCAGATGGTGGGATTTCATGAGCTCCTGGAAAAATTTGGAATTCGGATTACTGTAGACCAAAAAGCTTCAATTTGAAAAAAAATTTTTTATGGTTAGGGTATTAGTCTGCAGAAAAATAAGATATGCAGAAATGTATTTTTCAGTTGATTTTTGTCCAATTTGACTATTTGCAAGAGTCTGGAGTTCGGTTTTTAAATTTTCCATCACTTCAAAAATATTGGAATGTGTGAGAGAGTCCTAGCAAACTTTGAATTCACAGAATTATAAAAAATTTGTAGTTTTTAGCTTTTTTTTTATTTCTGAAATTTTCTTTTTCATGCCTGTTTCCGTCTTTAAACGCGAAGAAACAGGTTTCTTTCAGAGTTCGTTACATATCTGAAAAACTAGGAATTTTGAAAAAAATTTTTGTGAATGCAAAGTCTTTAATCTAGGTCTGTATTACAGGGTTAAAAACTTCCAACGTTATTGGAAGCTTGAAAGCTGAGCTCTAAACTTTTGAAAATAGTAATAATGGCCAAAAATCAACTGGGAAAAAAACGTTTCTATCATTTATATTTAAAAAATCACTAACTCAAAACATCCTCCACTTGCTTCCGATCCTCTAGCCTAATTCTGTATGGGTACGACTTTTTGCAGTCCTCAACAATCTGTGCGAACACTTGATCAATGATTTGAATGTCGTTTAGCACTTCTCCGGGATAGAACATCTCTTTCCGAATGGTCAATTTCCATGGGGCTTTTACAAATTTAACAGCAGACTTCTCAGTGGCCACCGGAGCTTTTGGTGGCTGTGGAACCAATGGTTCTTCTGCAAAAGTATCAGTTTCAGAGTTCAGTTTTTAAA</canonical>
            <polymorphic>ACACTGTTTGTTGAACAAGAAAACAATCGTATATTTTAATGAATAATAAAAAGAAACAAACCTCATAGACTTGATTGAAATATAAGGGCCATAATCTGGCTCTTTCAATGATGGCAACCTTAACGTCTGGATGAATGTTTGATTGGTTGTTCAGGTCAGATGGTGGGATTTCATGAGCTCCTGGAAAAATTTGGAATTCGGATTACTGTAGACCAAAAAGCTTCAATTTGAAAAAAAATTTTTTATGGTTAGGGTATTAGTCTGCAGAAAAATAAGATATGCAGAAATGTATTTTTCAGTTGATTTTTGTCCAATTTGACTATTTGCAAGAGTCTGGAGTTCGGTTTTTAAATTTTCCATCACTTCAAAAATATTGGAATGTGTGAGAGAGTCCTAGCAAACTTTGAATTCACAGAATTATAAAAAATTTGTAGTTTTTAGCTTTTTTTTTATTTCTGAAATTTTCTTTTTCATGCCTGTTTCCGTCTTTAAACGCGAARAAACAGGTTTCTTTCAGAGTTCGTTACATATCTGAAAAACTAGGAATTTTGAAAAAAATTTTTGTGAATGCAAAGTCTTTAATCTAGGTCTGTATTACAGGGTTAAAAACTTCCAACGTTATTGGAAGCTTGAAAGCTGAGCTCTAAACTTTTGAAAATAGTAATAATGGCCAAAAATCAACTGGGAAAAAAACGTTTCTATCATTTATATTTAAAAAATCACTAACTCAAAACATCCTCCACTTGCTTCCGATCCTCTAGCCTAATTCTGTATGGGTACGACTTTTTGCAGTCCTCAACAATCTGTGCGAACACTTGATCAATGATTTGAATGTCGTTTAGCACTTCTCCGGGATAGAACATCTCTTTCCGAATGGTCAATTTCCATGGGGCTTTTACAAATTTAACAGCAGACTTCTCAGTGGCCACCGGAGCTTTTGGTGGCTGTGGAACCAATGGTTCTTCTGCAAAAGTATCAGTTTCAGAGTTCAGTTTTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTATGGTTAGGGTATTAGTCTG</pcr_primer_p1>
		<pcr_primer_p2>GGATGTTTTGAGTTAGTGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>499</pcr_amplicon_size>
		<canonical_amplicon>TTTTTATGGTTAGGGTATTAGTCTGCAGAAAAATAAGATATGCAGAAATGTATTTTTCAGTTGATTTTTGTCCAATTTGACTATTTGCAAGAGTCTGGAGTTCGGTTTTTAAATTTTCCATCACTTCAAAAATATTGGAATGTGTGAGAGAGTCCTAGCAAACTTTGAATTCACAGAATTATAAAAAATTTGTAGTTTTTAGCTTTTTTTTTATTTCTGAAATTTTCTTTTTCATGCCTGTTTCCGTCTTTAAACGCGAAGAAACAGGTTTCTTTCAGAGTTCGTTACATATCTGAAAAACTAGGAATTTTGAAAAAAATTTTTGTGAATGCAAAGTCTTTAATCTAGGTCTGTATTACAGGGTTAAAAACTTCCAACGTTATTGGAAGCTTGAAAGCTGAGCTCTAAACTTTTGAAAATAGTAATAATGGCCAAAAATCAACTGGGAAAAAAACGTTTCTATCATTTATATTTAAAAAATCACTAACTCAAAACATCC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTATGGTTAGGGTATTAGTCTGCAGAAAAATAAGATATGCAGAAATGTATTTTTCAGTTGATTTTTGTCCAATTTGACTATTTGCAAGAGTCTGGAGTTCGGTTTTTAAATTTTCCATCACTTCAAAAATATTGGAATGTGTGAGAGAGTCCTAGCAAACTTTGAATTCACAGAATTATAAAAAATTTGTAGTTTTTAGCTTTTTTTTTATTTCTGAAATTTTCTTTTTCATGCCTGTTTCCGTCTTTAAACGCGAARAAACAGGTTTCTTTCAGAGTTCGTTACATATCTGAAAAACTAGGAATTTTGAAAAAAATTTTTGTGAATGCAAAGTCTTTAATCTAGGTCTGTATTACAGGGTTAAAAACTTCCAACGTTATTGGAAGCTTGAAAGCTGAGCTCTAAACTTTTGAAAATAGTAATAATGGCCAAAAATCAACTGGGAAAAAAACGTTTCTATCATTTATATTTAAAAAATCACTAACTCAAAACATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25931</snp_id>
        <super_contig>c001800837.Contig1</super_contig>
        <contig_pos>5807</contig_pos>
        <strand></strand>
        <context>gggttaaaaa[C/T]ttccaacgtt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGTGAATGCAAAGTCTTTAATCTAGGTCTGTATTACAGGGTTAAAAA</left_flank>
        <right_flank>TTCCAACGTTATTGGAAGCTTGAAAGCTGAGCTCTAAACTTTTGAAAATA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGCAACCTTAACGTCTGGATGAATGTTTGATTGGTTGTTCAGGTCAGATGGTGGGATTTCATGAGCTCCTGGAAAAATTTGGAATTCGGATTACTGTAGACCAAAAAGCTTCAATTTGAAAAAAAATTTTTTATGGTTAGGGTATTAGTCTGCAGAAAAATAAGATATGCAGAAATGTATTTTTCAGTTGATTTTTGTCCAATTTGACTATTTGCAAGAGTCTGGAGTTCGGTTTTTAAATTTTCCATCACTTCAAAAATATTGGAATGTGTGAGAGAGTCCTAGCAAACTTTGAATTCACAGAATTATAAAAAATTTGTAGTTTTTAGCTTTTTTTTTATTTCTGAAATTTTCTTTTTCATGCCTGTTTCCGTCTTTAAACGCGAAGAAACAGGTTTCTTTCAGAGTTCGTTACATATCTGAAAAACTAGGAATTTTGAAAAAAATTTTTGTGAATGCAAAGTCTTTAATCTAGGTCTGTATTACAGGGTTAAAAACTTCCAACGTTATTGGAAGCTTGAAAGCTGAGCTCTAAACTTTTGAAAATAGTAATAATGGCCAAAAATCAACTGGGAAAAAAACGTTTCTATCATTTATATTTAAAAAATCACTAACTCAAAACATCCTCCACTTGCTTCCGATCCTCTAGCCTAATTCTGTATGGGTACGACTTTTTGCAGTCCTCAACAATCTGTGCGAACACTTGATCAATGATTTGAATGTCGTTTAGCACTTCTCCGGGATAGAACATCTCTTTCCGAATGGTCAATTTCCATGGGGCTTTTACAAATTTAACAGCAGACTTCTCAGTGGCCACCGGAGCTTTTGGTGGCTGTGGAACCAATGGTTCTTCTGCAAAAGTATCAGTTTCAGAGTTCAGTTTTTAAACGAAAAAAAAAAAAACAAATCCGTACTAATAAATGAACCGCGAATTCTTCCCTGAGTCTCAGGATCTCTTTCCACTGCATCTTTGACAACCCATTCGTGACGGATTGGCT</canonical>
            <polymorphic>ATGGCAACCTTAACGTCTGGATGAATGTTTGATTGGTTGTTCAGGTCAGATGGTGGGATTTCATGAGCTCCTGGAAAAATTTGGAATTCGGATTACTGTAGACCAAAAAGCTTCAATTTGAAAAAAAATTTTTTATGGTTAGGGTATTAGTCTGCAGAAAAATAAGATATGCAGAAATGTATTTTTCAGTTGATTTTTGTCCAATTTGACTATTTGCAAGAGTCTGGAGTTCGGTTTTTAAATTTTCCATCACTTCAAAAATATTGGAATGTGTGAGAGAGTCCTAGCAAACTTTGAATTCACAGAATTATAAAAAATTTGTAGTTTTTAGCTTTTTTTTTATTTCTGAAATTTTCTTTTTCATGCCTGTTTCCGTCTTTAAACGCGAAGAAACAGGTTTCTTTCAGAGTTCGTTACATATCTGAAAAACTAGGAATTTTGAAAAAAATTTTTGTGAATGCAAAGTCTTTAATCTAGGTCTGTATTACAGGGTTAAAAAYTTCCAACGTTATTGGAAGCTTGAAAGCTGAGCTCTAAACTTTTGAAAATAGTAATAATGGCCAAAAATCAACTGGGAAAAAAACGTTTCTATCATTTATATTTAAAAAATCACTAACTCAAAACATCCTCCACTTGCTTCCGATCCTCTAGCCTAATTCTGTATGGGTACGACTTTTTGCAGTCCTCAACAATCTGTGCGAACACTTGATCAATGATTTGAATGTCGTTTAGCACTTCTCCGGGATAGAACATCTCTTTCCGAATGGTCAATTTCCATGGGGCTTTTACAAATTTAACAGCAGACTTCTCAGTGGCCACCGGAGCTTTTGGTGGCTGTGGAACCAATGGTTCTTCTGCAAAAGTATCAGTTTCAGAGTTCAGTTTTTAAACGAAAAAAAAAAAAACAAATCCGTACTAATAAATGAACCGCGAATTCTTCCCTGAGTCTCAGGATCTCTTTCCACTGCATCTTTGACAACCCATTCGTGACGGATTGGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTATGGTTAGGGTATTAGTCTG</pcr_primer_p1>
		<pcr_primer_p2>GGATGTTTTGAGTTAGTGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>499</pcr_amplicon_size>
		<canonical_amplicon>TTTTTATGGTTAGGGTATTAGTCTGCAGAAAAATAAGATATGCAGAAATGTATTTTTCAGTTGATTTTTGTCCAATTTGACTATTTGCAAGAGTCTGGAGTTCGGTTTTTAAATTTTCCATCACTTCAAAAATATTGGAATGTGTGAGAGAGTCCTAGCAAACTTTGAATTCACAGAATTATAAAAAATTTGTAGTTTTTAGCTTTTTTTTTATTTCTGAAATTTTCTTTTTCATGCCTGTTTCCGTCTTTAAACGCGAAGAAACAGGTTTCTTTCAGAGTTCGTTACATATCTGAAAAACTAGGAATTTTGAAAAAAATTTTTGTGAATGCAAAGTCTTTAATCTAGGTCTGTATTACAGGGTTAAAAACTTCCAACGTTATTGGAAGCTTGAAAGCTGAGCTCTAAACTTTTGAAAATAGTAATAATGGCCAAAAATCAACTGGGAAAAAAACGTTTCTATCATTTATATTTAAAAAATCACTAACTCAAAACATCC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTATGGTTAGGGTATTAGTCTGCAGAAAAATAAGATATGCAGAAATGTATTTTTCAGTTGATTTTTGTCCAATTTGACTATTTGCAAGAGTCTGGAGTTCGGTTTTTAAATTTTCCATCACTTCAAAAATATTGGAATGTGTGAGAGAGTCCTAGCAAACTTTGAATTCACAGAATTATAAAAAATTTGTAGTTTTTAGCTTTTTTTTTATTTCTGAAATTTTCTTTTTCATGCCTGTTTCCGTCTTTAAACGCGAAGAAACAGGTTTCTTTCAGAGTTCGTTACATATCTGAAAAACTAGGAATTTTGAAAAAAATTTTTGTGAATGCAAAGTCTTTAATCTAGGTCTGTATTACAGGGTTAAAAAYTTCCAACGTTATTGGAAGCTTGAAAGCTGAGCTCTAAACTTTTGAAAATAGTAATAATGGCCAAAAATCAACTGGGAAAAAAACGTTTCTATCATTTATATTTAAAAAATCACTAACTCAAAACATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25932</snp_id>
        <super_contig>c001800837.Contig1</super_contig>
        <contig_pos>5820</contig_pos>
        <strand></strand>
        <context>ccaacgttat[T/C]ggaagcttga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAGTCTTTAATCTAGGTCTGTATTACAGGGTTAAAAACTTCCAACGTTAT</left_flank>
        <right_flank>GGAAGCTTGAAAGCTGAGCTCTAAACTTTTGAAAATAGTAATAATGGCCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTCTGGATGAATGTTTGATTGGTTGTTCAGGTCAGATGGTGGGATTTCATGAGCTCCTGGAAAAATTTGGAATTCGGATTACTGTAGACCAAAAAGCTTCAATTTGAAAAAAAATTTTTTATGGTTAGGGTATTAGTCTGCAGAAAAATAAGATATGCAGAAATGTATTTTTCAGTTGATTTTTGTCCAATTTGACTATTTGCAAGAGTCTGGAGTTCGGTTTTTAAATTTTCCATCACTTCAAAAATATTGGAATGTGTGAGAGAGTCCTAGCAAACTTTGAATTCACAGAATTATAAAAAATTTGTAGTTTTTAGCTTTTTTTTTATTTCTGAAATTTTCTTTTTCATGCCTGTTTCCGTCTTTAAACGCGAAGAAACAGGTTTCTTTCAGAGTTCGTTACATATCTGAAAAACTAGGAATTTTGAAAAAAATTTTTGTGAATGCAAAGTCTTTAATCTAGGTCTGTATTACAGGGTTAAAAACTTCCAACGTTATTGGAAGCTTGAAAGCTGAGCTCTAAACTTTTGAAAATAGTAATAATGGCCAAAAATCAACTGGGAAAAAAACGTTTCTATCATTTATATTTAAAAAATCACTAACTCAAAACATCCTCCACTTGCTTCCGATCCTCTAGCCTAATTCTGTATGGGTACGACTTTTTGCAGTCCTCAACAATCTGTGCGAACACTTGATCAATGATTTGAATGTCGTTTAGCACTTCTCCGGGATAGAACATCTCTTTCCGAATGGTCAATTTCCATGGGGCTTTTACAAATTTAACAGCAGACTTCTCAGTGGCCACCGGAGCTTTTGGTGGCTGTGGAACCAATGGTTCTTCTGCAAAAGTATCAGTTTCAGAGTTCAGTTTTTAAACGAAAAAAAAAAAAACAAATCCGTACTAATAAATGAACCGCGAATTCTTCCCTGAGTCTCAGGATCTCTTTCCACTGCATCTTTGACAACCCATTCGTGACGGATTGGCTGTTGGATTTGTGG</canonical>
            <polymorphic>CGTCTGGATGAATGTTTGATTGGTTGTTCAGGTCAGATGGTGGGATTTCATGAGCTCCTGGAAAAATTTGGAATTCGGATTACTGTAGACCAAAAAGCTTCAATTTGAAAAAAAATTTTTTATGGTTAGGGTATTAGTCTGCAGAAAAATAAGATATGCAGAAATGTATTTTTCAGTTGATTTTTGTCCAATTTGACTATTTGCAAGAGTCTGGAGTTCGGTTTTTAAATTTTCCATCACTTCAAAAATATTGGAATGTGTGAGAGAGTCCTAGCAAACTTTGAATTCACAGAATTATAAAAAATTTGTAGTTTTTAGCTTTTTTTTTATTTCTGAAATTTTCTTTTTCATGCCTGTTTCCGTCTTTAAACGCGAAGAAACAGGTTTCTTTCAGAGTTCGTTACATATCTGAAAAACTAGGAATTTTGAAAAAAATTTTTGTGAATGCAAAGTCTTTAATCTAGGTCTGTATTACAGGGTTAAAAACTTCCAACGTTATYGGAAGCTTGAAAGCTGAGCTCTAAACTTTTGAAAATAGTAATAATGGCCAAAAATCAACTGGGAAAAAAACGTTTCTATCATTTATATTTAAAAAATCACTAACTCAAAACATCCTCCACTTGCTTCCGATCCTCTAGCCTAATTCTGTATGGGTACGACTTTTTGCAGTCCTCAACAATCTGTGCGAACACTTGATCAATGATTTGAATGTCGTTTAGCACTTCTCCGGGATAGAACATCTCTTTCCGAATGGTCAATTTCCATGGGGCTTTTACAAATTTAACAGCAGACTTCTCAGTGGCCACCGGAGCTTTTGGTGGCTGTGGAACCAATGGTTCTTCTGCAAAAGTATCAGTTTCAGAGTTCAGTTTTTAAACGAAAAAAAAAAAAACAAATCCGTACTAATAAATGAACCGCGAATTCTTCCCTGAGTCTCAGGATCTCTTTCCACTGCATCTTTGACAACCCATTCGTGACGGATTGGCTGTTGGATTTGTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTATGGTTAGGGTATTAGTCTG</pcr_primer_p1>
		<pcr_primer_p2>GGATGTTTTGAGTTAGTGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>499</pcr_amplicon_size>
		<canonical_amplicon>TTTTTATGGTTAGGGTATTAGTCTGCAGAAAAATAAGATATGCAGAAATGTATTTTTCAGTTGATTTTTGTCCAATTTGACTATTTGCAAGAGTCTGGAGTTCGGTTTTTAAATTTTCCATCACTTCAAAAATATTGGAATGTGTGAGAGAGTCCTAGCAAACTTTGAATTCACAGAATTATAAAAAATTTGTAGTTTTTAGCTTTTTTTTTATTTCTGAAATTTTCTTTTTCATGCCTGTTTCCGTCTTTAAACGCGAAGAAACAGGTTTCTTTCAGAGTTCGTTACATATCTGAAAAACTAGGAATTTTGAAAAAAATTTTTGTGAATGCAAAGTCTTTAATCTAGGTCTGTATTACAGGGTTAAAAACTTCCAACGTTATTGGAAGCTTGAAAGCTGAGCTCTAAACTTTTGAAAATAGTAATAATGGCCAAAAATCAACTGGGAAAAAAACGTTTCTATCATTTATATTTAAAAAATCACTAACTCAAAACATCC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTATGGTTAGGGTATTAGTCTGCAGAAAAATAAGATATGCAGAAATGTATTTTTCAGTTGATTTTTGTCCAATTTGACTATTTGCAAGAGTCTGGAGTTCGGTTTTTAAATTTTCCATCACTTCAAAAATATTGGAATGTGTGAGAGAGTCCTAGCAAACTTTGAATTCACAGAATTATAAAAAATTTGTAGTTTTTAGCTTTTTTTTTATTTCTGAAATTTTCTTTTTCATGCCTGTTTCCGTCTTTAAACGCGAAGAAACAGGTTTCTTTCAGAGTTCGTTACATATCTGAAAAACTAGGAATTTTGAAAAAAATTTTTGTGAATGCAAAGTCTTTAATCTAGGTCTGTATTACAGGGTTAAAAACTTCCAACGTTATYGGAAGCTTGAAAGCTGAGCTCTAAACTTTTGAAAATAGTAATAATGGCCAAAAATCAACTGGGAAAAAAACGTTTCTATCATTTATATTTAAAAAATCACTAACTCAAAACATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25933</snp_id>
        <super_contig>c001800837.Contig1</super_contig>
        <contig_pos>5892</contig_pos>
        <strand></strand>
        <context>ggaaaaaaac[G/C]tttctatCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TAAACTTTTGAAAATAGTAATAATGGCCAAAAATCAACTGGGAAAAAAAC</left_flank>
        <right_flank>TTTCTATCATTTATATTTAAAAAATCACTAACTCAAAACATCCTCCACTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCGGATTACTGTAGACCAAAAAGCTTCAATTTGAAAAAAAATTTTTTATGGTTAGGGTATTAGTCTGCAGAAAAATAAGATATGCAGAAATGTATTTTTCAGTTGATTTTTGTCCAATTTGACTATTTGCAAGAGTCTGGAGTTCGGTTTTTAAATTTTCCATCACTTCAAAAATATTGGAATGTGTGAGAGAGTCCTAGCAAACTTTGAATTCACAGAATTATAAAAAATTTGTAGTTTTTAGCTTTTTTTTTATTTCTGAAATTTTCTTTTTCATGCCTGTTTCCGTCTTTAAACGCGAAGAAACAGGTTTCTTTCAGAGTTCGTTACATATCTGAAAAACTAGGAATTTTGAAAAAAATTTTTGTGAATGCAAAGTCTTTAATCTAGGTCTGTATTACAGGGTTAAAAACTTCCAACGTTATTGGAAGCTTGAAAGCTGAGCTCTAAACTTTTGAAAATAGTAATAATGGCCAAAAATCAACTGGGAAAAAAACGTTTCTATCATTTATATTTAAAAAATCACTAACTCAAAACATCCTCCACTTGCTTCCGATCCTCTAGCCTAATTCTGTATGGGTACGACTTTTTGCAGTCCTCAACAATCTGTGCGAACACTTGATCAATGATTTGAATGTCGTTTAGCACTTCTCCGGGATAGAACATCTCTTTCCGAATGGTCAATTTCCATGGGGCTTTTACAAATTTAACAGCAGACTTCTCAGTGGCCACCGGAGCTTTTGGTGGCTGTGGAACCAATGGTTCTTCTGCAAAAGTATCAGTTTCAGAGTTCAGTTTTTAAACGAAAAAAAAAAAAACAAATCCGTACTAATAAATGAACCGCGAATTCTTCCCTGAGTCTCAGGATCTCTTTCCACTGCATCTTTGACAACCCATTCGTGACGGATTGGCTGTTGGATTTGTGGTGGTGGCGGTGGTGGGGGAGTTGGTTGAGGGATTGGGCTCTAAAAATGAATTCGGGGTTTTAAAAAAGCGAC</canonical>
            <polymorphic>ATTCGGATTACTGTAGACCAAAAAGCTTCAATTTGAAAAAAAATTTTTTATGGTTAGGGTATTAGTCTGCAGAAAAATAAGATATGCAGAAATGTATTTTTCAGTTGATTTTTGTCCAATTTGACTATTTGCAAGAGTCTGGAGTTCGGTTTTTAAATTTTCCATCACTTCAAAAATATTGGAATGTGTGAGAGAGTCCTAGCAAACTTTGAATTCACAGAATTATAAAAAATTTGTAGTTTTTAGCTTTTTTTTTATTTCTGAAATTTTCTTTTTCATGCCTGTTTCCGTCTTTAAACGCGAAGAAACAGGTTTCTTTCAGAGTTCGTTACATATCTGAAAAACTAGGAATTTTGAAAAAAATTTTTGTGAATGCAAAGTCTTTAATCTAGGTCTGTATTACAGGGTTAAAAACTTCCAACGTTATTGGAAGCTTGAAAGCTGAGCTCTAAACTTTTGAAAATAGTAATAATGGCCAAAAATCAACTGGGAAAAAAACSTTTCTATCATTTATATTTAAAAAATCACTAACTCAAAACATCCTCCACTTGCTTCCGATCCTCTAGCCTAATTCTGTATGGGTACGACTTTTTGCAGTCCTCAACAATCTGTGCGAACACTTGATCAATGATTTGAATGTCGTTTAGCACTTCTCCGGGATAGAACATCTCTTTCCGAATGGTCAATTTCCATGGGGCTTTTACAAATTTAACAGCAGACTTCTCAGTGGCCACCGGAGCTTTTGGTGGCTGTGGAACCAATGGTTCTTCTGCAAAAGTATCAGTTTCAGAGTTCAGTTTTTAAACGAAAAAAAAAAAAACAAATCCGTACTAATAAATGAACCGCGAATTCTTCCCTGAGTCTCAGGATCTCTTTCCACTGCATCTTTGACAACCCATTCGTGACGGATTGGCTGTTGGATTTGTGGTGGTGGCGGTGGTGGGGGAGTTGGTTGAGGGATTGGGCTCTAAAAATGAATTCGGGGTTTTAAAAAAGCGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>502 421 77</canonical_bands>
                <polymorphic_bands>579 421</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>502 421 77</canonical_bands>
                <polymorphic_bands>579 421</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTATGGTTAGGGTATTAGTCTG</pcr_primer_p1>
		<pcr_primer_p2>CAAGTGGAGGATGTTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>507</pcr_amplicon_size>
		<canonical_amplicon>TTTTTATGGTTAGGGTATTAGTCTGCAGAAAAATAAGATATGCAGAAATGTATTTTTCAGTTGATTTTTGTCCAATTTGACTATTTGCAAGAGTCTGGAGTTCGGTTTTTAAATTTTCCATCACTTCAAAAATATTGGAATGTGTGAGAGAGTCCTAGCAAACTTTGAATTCACAGAATTATAAAAAATTTGTAGTTTTTAGCTTTTTTTTTATTTCTGAAATTTTCTTTTTCATGCCTGTTTCCGTCTTTAAACGCGAAGAAACAGGTTTCTTTCAGAGTTCGTTACATATCTGAAAAACTAGGAATTTTGAAAAAAATTTTTGTGAATGCAAAGTCTTTAATCTAGGTCTGTATTACAGGGTTAAAAACTTCCAACGTTATTGGAAGCTTGAAAGCTGAGCTCTAAACTTTTGAAAATAGTAATAATGGCCAAAAATCAACTGGGAAAAAAACGTTTCTATCATTTATATTTAAAAAATCACTAACTCAAAACATCCTCCACTTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTATGGTTAGGGTATTAGTCTGCAGAAAAATAAGATATGCAGAAATGTATTTTTCAGTTGATTTTTGTCCAATTTGACTATTTGCAAGAGTCTGGAGTTCGGTTTTTAAATTTTCCATCACTTCAAAAATATTGGAATGTGTGAGAGAGTCCTAGCAAACTTTGAATTCACAGAATTATAAAAAATTTGTAGTTTTTAGCTTTTTTTTTATTTCTGAAATTTTCTTTTTCATGCCTGTTTCCGTCTTTAAACGCGAAGAAACAGGTTTCTTTCAGAGTTCGTTACATATCTGAAAAACTAGGAATTTTGAAAAAAATTTTTGTGAATGCAAAGTCTTTAATCTAGGTCTGTATTACAGGGTTAAAAACTTCCAACGTTATTGGAAGCTTGAAAGCTGAGCTCTAAACTTTTGAAAATAGTAATAATGGCCAAAAATCAACTGGGAAAAAAACSTTTCTATCATTTATATTTAAAAAATCACTAACTCAAAACATCCTCCACTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25934</snp_id>
        <super_contig>c001800837.Contig1</super_contig>
        <contig_pos>5953</contig_pos>
        <strand>+</strand>
        <context>GCTTCCGATC[A/C]TCTAGCCTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTATATTTAAAAAATCACTAACTCAAAACATCCTCCACTTGCTTCCGATC</left_flank>
        <right_flank>TCTAGCCTAATTCTGTATGGGTACGACTTTTTGCAGTCCTCAACAATCTG</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGTCTGCAGAAAAATAAGATATGCAGAAATGTATTTTTCAGTTGATTTTTGTCCAATTTGACTATTTGCAAGAGTCTGGAGTTCGGTTTTTAAATTTTCCATCACTTCAAAAATATTGGAATGTGTGAGAGAGTCCTAGCAAACTTTGAATTCACAGAATTATAAAAAATTTGTAGTTTTTAGCTTTTTTTTTATTTCTGAAATTTTCTTTTTCATGCCTGTTTCCGTCTTTAAACGCGAAGAAACAGGTTTCTTTCAGAGTTCGTTACATATCTGAAAAACTAGGAATTTTGAAAAAAATTTTTGTGAATGCAAAGTCTTTAATCTAGGTCTGTATTACAGGGTTAAAAACTTCCAACGTTATTGGAAGCTTGAAAGCTGAGCTCTAAACTTTTGAAAATAGTAATAATGGCCAAAAATCAACTGGGAAAAAAACGTTTCTATCATTTATATTTAAAAAATCACTAACTCAAAACATCCTCCACTTGCTTCCGATCCTCTAGCCTAATTCTGTATGGGTACGACTTTTTGCAGTCCTCAACAATCTGTGCGAACACTTGATCAATGATTTGAATGTCGTTTAGCACTTCTCCGGGATAGAACATCTCTTTCCGAATGGTCAATTTCCATGGGGCTTTTACAAATTTAACAGCAGACTTCTCAGTGGCCACCGGAGCTTTTGGTGGCTGTGGAACCAATGGTTCTTCTGCAAAAGTATCAGTTTCAGAGTTCAGTTTTTAAACGAAAAAAAAAAAAACAAATCCGTACTAATAAATGAACCGCGAATTCTTCCCTGAGTCTCAGGATCTCTTTCCACTGCATCTTTGACAACCCATTCGTGACGGATTGGCTGTTGGATTTGTGGTGGTGGCGGTGGTGGGGGAGTTGGTTGAGGGATTGGGCTCTAAAAATGAATTCGGGGTTTTAAAAAAGCGACAAAATGTTAGTTACAGGTGGGCGAACATAAACGAGTTGCTCCGGTGAAGGTGGTGCTGGTG</canonical>
            <polymorphic>TTAGTCTGCAGAAAAATAAGATATGCAGAAATGTATTTTTCAGTTGATTTTTGTCCAATTTGACTATTTGCAAGAGTCTGGAGTTCGGTTTTTAAATTTTCCATCACTTCAAAAATATTGGAATGTGTGAGAGAGTCCTAGCAAACTTTGAATTCACAGAATTATAAAAAATTTGTAGTTTTTAGCTTTTTTTTTATTTCTGAAATTTTCTTTTTCATGCCTGTTTCCGTCTTTAAACGCGAAGAAACAGGTTTCTTTCAGAGTTCGTTACATATCTGAAAAACTAGGAATTTTGAAAAAAATTTTTGTGAATGCAAAGTCTTTAATCTAGGTCTGTATTACAGGGTTAAAAACTTCCAACGTTATTGGAAGCTTGAAAGCTGAGCTCTAAACTTTTGAAAATAGTAATAATGGCCAAAAATCAACTGGGAAAAAAACGTTTCTATCATTTATATTTAAAAAATCACTAACTCAAAACATCCTCCACTTGCTTCCGATCMTCTAGCCTAATTCTGTATGGGTACGACTTTTTGCAGTCCTCAACAATCTGTGCGAACACTTGATCAATGATTTGAATGTCGTTTAGCACTTCTCCGGGATAGAACATCTCTTTCCGAATGGTCAATTTCCATGGGGCTTTTACAAATTTAACAGCAGACTTCTCAGTGGCCACCGGAGCTTTTGGTGGCTGTGGAACCAATGGTTCTTCTGCAAAAGTATCAGTTTCAGAGTTCAGTTTTTAAACGAAAAAAAAAAAAACAAATCCGTACTAATAAATGAACCGCGAATTCTTCCCTGAGTCTCAGGATCTCTTTCCACTGCATCTTTGACAACCCATTCGTGACGGATTGGCTGTTGGATTTGTGGTGGTGGCGGTGGTGGGGGAGTTGGTTGAGGGATTGGGCTCTAAAAATGAATTCGGGGTTTTAAAAAAGCGACAAAATGTTAGTTACAGGTGGGCGAACATAAACGAGTTGCTCCGGTGAAGGTGGTGCTGGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTATGGTTAGGGTATTAGTCTG</pcr_primer_p1>
		<pcr_primer_p2>AAGTGTTCGCACAGATTGTT</pcr_primer_p2>
		<pcr_amplicon_size>578</pcr_amplicon_size>
		<canonical_amplicon>CCTCTAGCCTAATTCTGTATGGGTACGACTTTTTGCAGTCCTCAACAATCTGTGCGAACACTT</canonical_amplicon>
		<polymorphic_amplicon>CMTCTAGCCTAATTCTGTATGGGTACGACTTTTTGCAGTCCTCAACAATCTGTGCGAACACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25935</snp_id>
        <super_contig>c001800837.Contig1</super_contig>
        <contig_pos>6111</contig_pos>
        <strand>+</strand>
        <context>TTAACAGCAG[A/G]CTTCTCAGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCTTTCCGAATGGTCAATTTCCATGGGGCTTTTACAAATTTAACAGCAG</left_flank>
        <right_flank>CTTCTCAGTGGCCACCGGAGCTTTTGGTGGCTGTGGAACCAATGGTTCTT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTATAAAAAATTTGTAGTTTTTAGCTTTTTTTTTATTTCTGAAATTTTCTTTTTCATGCCTGTTTCCGTCTTTAAACGCGAAGAAACAGGTTTCTTTCAGAGTTCGTTACATATCTGAAAAACTAGGAATTTTGAAAAAAATTTTTGTGAATGCAAAGTCTTTAATCTAGGTCTGTATTACAGGGTTAAAAACTTCCAACGTTATTGGAAGCTTGAAAGCTGAGCTCTAAACTTTTGAAAATAGTAATAATGGCCAAAAATCAACTGGGAAAAAAACGTTTCTATCATTTATATTTAAAAAATCACTAACTCAAAACATCCTCCACTTGCTTCCGATCCTCTAGCCTAATTCTGTATGGGTACGACTTTTTGCAGTCCTCAACAATCTGTGCGAACACTTGATCAATGATTTGAATGTCGTTTAGCACTTCTCCGGGATAGAACATCTCTTTCCGAATGGTCAATTTCCATGGGGCTTTTACAAATTTAACAGCAGACTTCTCAGTGGCCACCGGAGCTTTTGGTGGCTGTGGAACCAATGGTTCTTCTGCAAAAGTATCAGTTTCAGAGTTCAGTTTTTAAACGAAAAAAAAAAAAACAAATCCGTACTAATAAATGAACCGCGAATTCTTCCCTGAGTCTCAGGATCTCTTTCCACTGCATCTTTGACAACCCATTCGTGACGGATTGGCTGTTGGATTTGTGGTGGTGGCGGTGGTGGGGGAGTTGGTTGAGGGATTGGGCTCTAAAAATGAATTCGGGGTTTTAAAAAAGCGACAAAATGTTAGTTACAGGTGGGCGAACATAAACGAGTTGCTCCGGTGAAGGTGGTGCTGGTGTTACTGGTCGTTGTGGGGTTACCGGACGAATCAAACGCACATTGTCCACGGGTGGTGGTAGTTTCTGTTAGTTGAGTTAGTAAGAAATAAAAGAAATACAATAAATGTGGTAGGGATGTTCTGAATGACCTTTCTGGAATTTTTTCGAAATGTCGAAC</canonical>
            <polymorphic>GAATTATAAAAAATTTGTAGTTTTTAGCTTTTTTTTTATTTCTGAAATTTTCTTTTTCATGCCTGTTTCCGTCTTTAAACGCGAAGAAACAGGTTTCTTTCAGAGTTCGTTACATATCTGAAAAACTAGGAATTTTGAAAAAAATTTTTGTGAATGCAAAGTCTTTAATCTAGGTCTGTATTACAGGGTTAAAAACTTCCAACGTTATTGGAAGCTTGAAAGCTGAGCTCTAAACTTTTGAAAATAGTAATAATGGCCAAAAATCAACTGGGAAAAAAACGTTTCTATCATTTATATTTAAAAAATCACTAACTCAAAACATCCTCCACTTGCTTCCGATCCTCTAGCCTAATTCTGTATGGGTACGACTTTTTGCAGTCCTCAACAATCTGTGCGAACACTTGATCAATGATTTGAATGTCGTTTAGCACTTCTCCGGGATAGAACATCTCTTTCCGAATGGTCAATTTCCATGGGGCTTTTACAAATTTAACAGCAGRCTTCTCAGTGGCCACCGGAGCTTTTGGTGGCTGTGGAACCAATGGTTCTTCTGCAAAAGTATCAGTTTCAGAGTTCAGTTTTTAAACGAAAAAAAAAAAAACAAATCCGTACTAATAAATGAACCGCGAATTCTTCCCTGAGTCTCAGGATCTCTTTCCACTGCATCTTTGACAACCCATTCGTGACGGATTGGCTGTTGGATTTGTGGTGGTGGCGGTGGTGGGGGAGTTGGTTGAGGGATTGGGCTCTAAAAATGAATTCGGGGTTTTAAAAAAGCGACAAAATGTTAGTTACAGGTGGGCGAACATAAACGAGTTGCTCCGGTGAAGGTGGTGCTGGTGTTACTGGTCGTTGTGGGGTTACCGGACGAATCAAACGCACATTGTCCACGGGTGGTGGTAGTTTCTGTTAGTTGAGTTAGTAAGAAATAAAAGAAATACAATAAATGTGGTAGGGATGTTCTGAATGACCTTTCTGGAATTTTTTCGAAATGTCGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGAATGTCGTTTAGCACTT</pcr_primer_p1>
		<pcr_primer_p2>AGTGGAAAGAGATCCTGAGACT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTTGAATGTCGTTTAGCACTTCTCCGGGATAGAACATCTCTTTCCGAATGGTCAATTTCCATGGGGCTTTTACAAATTTAACAGCAGACTTCTCAGTGGCCACCGGAGCTTTTGGTGGCTGTGGAACCAATGGTTCTTCTGCAAAAGTATCAGTTTCAGAGTTCAGTTTTTAAACGAAAAAAAAAAAAACAAATCCGTACTAATAAATGAACCGCGAATTCTTCCCTGAGTCTCAGGATCTCTTTCCACT</canonical_amplicon>
		<polymorphic_amplicon>ATTTGAATGTCGTTTAGCACTTCTCCGGGATAGAACATCTCTTTCCGAATGGTCAATTTCCATGGGGCTTTTACAAATTTAACAGCAGRCTTCTCAGTGGCCACCGGAGCTTTTGGTGGCTGTGGAACCAATGGTTCTTCTGCAAAAGTATCAGTTTCAGAGTTCAGTTTTTAAACGAAAAAAAAAAAAACAAATCCGTACTAATAAATGAACCGCGAATTCTTCCCTGAGTCTCAGGATCTCTTTCCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25936</snp_id>
        <super_contig>c001800837.Contig1</super_contig>
        <contig_pos>6148</contig_pos>
        <strand>+</strand>
        <context>GTGGCTGTGG[A/G]ACCAATGGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTAACAGCAGACTTCTCAGTGGCCACCGGAGCTTTTGGTGGCTGTGG</left_flank>
        <right_flank>ACCAATGGTTCTTCTGCAAAAGTATCAGTTTCAGAGTTCAGTTTTTAAAC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCTGAAATTTTCTTTTTCATGCCTGTTTCCGTCTTTAAACGCGAAGAAACAGGTTTCTTTCAGAGTTCGTTACATATCTGAAAAACTAGGAATTTTGAAAAAAATTTTTGTGAATGCAAAGTCTTTAATCTAGGTCTGTATTACAGGGTTAAAAACTTCCAACGTTATTGGAAGCTTGAAAGCTGAGCTCTAAACTTTTGAAAATAGTAATAATGGCCAAAAATCAACTGGGAAAAAAACGTTTCTATCATTTATATTTAAAAAATCACTAACTCAAAACATCCTCCACTTGCTTCCGATCCTCTAGCCTAATTCTGTATGGGTACGACTTTTTGCAGTCCTCAACAATCTGTGCGAACACTTGATCAATGATTTGAATGTCGTTTAGCACTTCTCCGGGATAGAACATCTCTTTCCGAATGGTCAATTTCCATGGGGCTTTTACAAATTTAACAGCAGACTTCTCAGTGGCCACCGGAGCTTTTGGTGGCTGTGGAACCAATGGTTCTTCTGCAAAAGTATCAGTTTCAGAGTTCAGTTTTTAAACGAAAAAAAAAAAAACAAATCCGTACTAATAAATGAACCGCGAATTCTTCCCTGAGTCTCAGGATCTCTTTCCACTGCATCTTTGACAACCCATTCGTGACGGATTGGCTGTTGGATTTGTGGTGGTGGCGGTGGTGGGGGAGTTGGTTGAGGGATTGGGCTCTAAAAATGAATTCGGGGTTTTAAAAAAGCGACAAAATGTTAGTTACAGGTGGGCGAACATAAACGAGTTGCTCCGGTGAAGGTGGTGCTGGTGTTACTGGTCGTTGTGGGGTTACCGGACGAATCAAACGCACATTGTCCACGGGTGGTGGTAGTTTCTGTTAGTTGAGTTAGTAAGAAATAAAAGAAATACAATAAATGTGGTAGGGATGTTCTGAATGACCTTTCTGGAATTTTTTCGAAATGTCGAACTTTCGGAATTTCAGACTATTCTGGTTTTCAAAATTTC</canonical>
            <polymorphic>ATTTCTGAAATTTTCTTTTTCATGCCTGTTTCCGTCTTTAAACGCGAAGAAACAGGTTTCTTTCAGAGTTCGTTACATATCTGAAAAACTAGGAATTTTGAAAAAAATTTTTGTGAATGCAAAGTCTTTAATCTAGGTCTGTATTACAGGGTTAAAAACTTCCAACGTTATTGGAAGCTTGAAAGCTGAGCTCTAAACTTTTGAAAATAGTAATAATGGCCAAAAATCAACTGGGAAAAAAACGTTTCTATCATTTATATTTAAAAAATCACTAACTCAAAACATCCTCCACTTGCTTCCGATCCTCTAGCCTAATTCTGTATGGGTACGACTTTTTGCAGTCCTCAACAATCTGTGCGAACACTTGATCAATGATTTGAATGTCGTTTAGCACTTCTCCGGGATAGAACATCTCTTTCCGAATGGTCAATTTCCATGGGGCTTTTACAAATTTAACAGCAGACTTCTCAGTGGCCACCGGAGCTTTTGGTGGCTGTGGRACCAATGGTTCTTCTGCAAAAGTATCAGTTTCAGAGTTCAGTTTTTAAACGAAAAAAAAAAAAACAAATCCGTACTAATAAATGAACCGCGAATTCTTCCCTGAGTCTCAGGATCTCTTTCCACTGCATCTTTGACAACCCATTCGTGACGGATTGGCTGTTGGATTTGTGGTGGTGGCGGTGGTGGGGGAGTTGGTTGAGGGATTGGGCTCTAAAAATGAATTCGGGGTTTTAAAAAAGCGACAAAATGTTAGTTACAGGTGGGCGAACATAAACGAGTTGCTCCGGTGAAGGTGGTGCTGGTGTTACTGGTCGTTGTGGGGTTACCGGACGAATCAAACGCACATTGTCCACGGGTGGTGGTAGTTTCTGTTAGTTGAGTTAGTAAGAAATAAAAGAAATACAATAAATGTGGTAGGGATGTTCTGAATGACCTTTCTGGAATTTTTTCGAAATGTCGAACTTTCGGAATTTCAGACTATTCTGGTTTTCAAAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGAATGTCGTTTAGCACTT</pcr_primer_p1>
		<pcr_primer_p2>AGTGGAAAGAGATCCTGAGACT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTTGAATGTCGTTTAGCACTTCTCCGGGATAGAACATCTCTTTCCGAATGGTCAATTTCCATGGGGCTTTTACAAATTTAACAGCAGACTTCTCAGTGGCCACCGGAGCTTTTGGTGGCTGTGGAACCAATGGTTCTTCTGCAAAAGTATCAGTTTCAGAGTTCAGTTTTTAAACGAAAAAAAAAAAAACAAATCCGTACTAATAAATGAACCGCGAATTCTTCCCTGAGTCTCAGGATCTCTTTCCACT</canonical_amplicon>
		<polymorphic_amplicon>ATTTGAATGTCGTTTAGCACTTCTCCGGGATAGAACATCTCTTTCCGAATGGTCAATTTCCATGGGGCTTTTACAAATTTAACAGCAGACTTCTCAGTGGCCACCGGAGCTTTTGGTGGCTGTGGRACCAATGGTTCTTCTGCAAAAGTATCAGTTTCAGAGTTCAGTTTTTAAACGAAAAAAAAAAAAACAAATCCGTACTAATAAATGAACCGCGAATTCTTCCCTGAGTCTCAGGATCTCTTTCCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25937</snp_id>
        <super_contig>c001800837.Contig1</super_contig>
        <contig_pos>6184</contig_pos>
        <strand>+</strand>
        <context>CAGTTTCAGA[G/T]TTCAGTTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTGGTGGCTGTGGAACCAATGGTTCTTCTGCAAAAGTATCAGTTTCAGA</left_flank>
        <right_flank>TTCAGTTTTTAAACGAAAAAAAAAAAAACAAATCCGTACTAATAAATGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAAACGCGAAGAAACAGGTTTCTTTCAGAGTTCGTTACATATCTGAAAAACTAGGAATTTTGAAAAAAATTTTTGTGAATGCAAAGTCTTTAATCTAGGTCTGTATTACAGGGTTAAAAACTTCCAACGTTATTGGAAGCTTGAAAGCTGAGCTCTAAACTTTTGAAAATAGTAATAATGGCCAAAAATCAACTGGGAAAAAAACGTTTCTATCATTTATATTTAAAAAATCACTAACTCAAAACATCCTCCACTTGCTTCCGATCCTCTAGCCTAATTCTGTATGGGTACGACTTTTTGCAGTCCTCAACAATCTGTGCGAACACTTGATCAATGATTTGAATGTCGTTTAGCACTTCTCCGGGATAGAACATCTCTTTCCGAATGGTCAATTTCCATGGGGCTTTTACAAATTTAACAGCAGACTTCTCAGTGGCCACCGGAGCTTTTGGTGGCTGTGGAACCAATGGTTCTTCTGCAAAAGTATCAGTTTCAGAGTTCAGTTTTTAAACGAAAAAAAAAAAAACAAATCCGTACTAATAAATGAACCGCGAATTCTTCCCTGAGTCTCAGGATCTCTTTCCACTGCATCTTTGACAACCCATTCGTGACGGATTGGCTGTTGGATTTGTGGTGGTGGCGGTGGTGGGGGAGTTGGTTGAGGGATTGGGCTCTAAAAATGAATTCGGGGTTTTAAAAAAGCGACAAAATGTTAGTTACAGGTGGGCGAACATAAACGAGTTGCTCCGGTGAAGGTGGTGCTGGTGTTACTGGTCGTTGTGGGGTTACCGGACGAATCAAACGCACATTGTCCACGGGTGGTGGTAGTTTCTGTTAGTTGAGTTAGTAAGAAATAAAAGAAATACAATAAATGTGGTAGGGATGTTCTGAATGACCTTTCTGGAATTTTTTCGAAATGTCGAACTTTCGGAATTTCAGACTATTCTGGTTTTCAAAATTTCGGATTAATTGGAATATTTTTTTCAAAATTTTCCATG</canonical>
            <polymorphic>TTTAAACGCGAAGAAACAGGTTTCTTTCAGAGTTCGTTACATATCTGAAAAACTAGGAATTTTGAAAAAAATTTTTGTGAATGCAAAGTCTTTAATCTAGGTCTGTATTACAGGGTTAAAAACTTCCAACGTTATTGGAAGCTTGAAAGCTGAGCTCTAAACTTTTGAAAATAGTAATAATGGCCAAAAATCAACTGGGAAAAAAACGTTTCTATCATTTATATTTAAAAAATCACTAACTCAAAACATCCTCCACTTGCTTCCGATCCTCTAGCCTAATTCTGTATGGGTACGACTTTTTGCAGTCCTCAACAATCTGTGCGAACACTTGATCAATGATTTGAATGTCGTTTAGCACTTCTCCGGGATAGAACATCTCTTTCCGAATGGTCAATTTCCATGGGGCTTTTACAAATTTAACAGCAGACTTCTCAGTGGCCACCGGAGCTTTTGGTGGCTGTGGAACCAATGGTTCTTCTGCAAAAGTATCAGTTTCAGAKTTCAGTTTTTAAACGAAAAAAAAAAAAACAAATCCGTACTAATAAATGAACCGCGAATTCTTCCCTGAGTCTCAGGATCTCTTTCCACTGCATCTTTGACAACCCATTCGTGACGGATTGGCTGTTGGATTTGTGGTGGTGGCGGTGGTGGGGGAGTTGGTTGAGGGATTGGGCTCTAAAAATGAATTCGGGGTTTTAAAAAAGCGACAAAATGTTAGTTACAGGTGGGCGAACATAAACGAGTTGCTCCGGTGAAGGTGGTGCTGGTGTTACTGGTCGTTGTGGGGTTACCGGACGAATCAAACGCACATTGTCCACGGGTGGTGGTAGTTTCTGTTAGTTGAGTTAGTAAGAAATAAAAGAAATACAATAAATGTGGTAGGGATGTTCTGAATGACCTTTCTGGAATTTTTTCGAAATGTCGAACTTTCGGAATTTCAGACTATTCTGGTTTTCAAAATTTCGGATTAATTGGAATATTTTTTTCAAAATTTTCCATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGAATGTCGTTTAGCACTT</pcr_primer_p1>
		<pcr_primer_p2>AGTGGAAAGAGATCCTGAGACT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTTGAATGTCGTTTAGCACTTCTCCGGGATAGAACATCTCTTTCCGAATGGTCAATTTCCATGGGGCTTTTACAAATTTAACAGCAGACTTCTCAGTGGCCACCGGAGCTTTTGGTGGCTGTGGAACCAATGGTTCTTCTGCAAAAGTATCAGTTTCAGAGTTCAGTTTTTAAACGAAAAAAAAAAAAACAAATCCGTACTAATAAATGAACCGCGAATTCTTCCCTGAGTCTCAGGATCTCTTTCCACT</canonical_amplicon>
		<polymorphic_amplicon>ATTTGAATGTCGTTTAGCACTTCTCCGGGATAGAACATCTCTTTCCGAATGGTCAATTTCCATGGGGCTTTTACAAATTTAACAGCAGACTTCTCAGTGGCCACCGGAGCTTTTGGTGGCTGTGGAACCAATGGTTCTTCTGCAAAAGTATCAGTTTCAGAKTTCAGTTTTTAAACGAAAAAAAAAAAAACAAATCCGTACTAATAAATGAACCGCGAATTCTTCCCTGAGTCTCAGGATCTCTTTCCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25938</snp_id>
        <super_contig>c001800837.Contig1</super_contig>
        <contig_pos>21924</contig_pos>
        <strand>+</strand>
        <context>TGGRAAAAAA[A/G]CAATGAGTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTCCACTTTAAACTTTTTTCAGAGCTCAAAAAAAGCTGGAAAAAAA</left_flank>
        <right_flank>CAATGAGTCAGACTCACCTTGCAGTCTTAGAATGTGCTCTCCGGCCATTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATGAAATGTCTGAATTTTCAAAAAAACCCCGCAAACTCAAAATAGATTTTGATTTTTATTTGGTTTCTCTTCAAAATCACGGAGCCCCCTAAAATCAAAAACCAACCGCGGAGCACTCGTAAACTCCATCATCTTTCTCTGGCTGATAATTGGTGATCTCCACGTAGGACGCATCTCTGGAAGAACAAGAAAAACTGGTTGCTGTTTAACTTGTAATTGATCATTCTGTCTTCTTACATTTTCGTTTTGACATATTCTGGTTTAATCACCGTCCCGCCACGCAGCCATCGTAACGATCCGGATTTTCCGCTTGGATGTTCACAACGAATCAACACACTGGATCCCTGCTCCACGCCTATTAGGGTTGTGCCAGCGTGAACACTTTCTGAAAAATTTTTGGAATTTTTTTCTTATCAATATTATTCAAAATGACTCATGTTTTCTATTTTTTTTCCACTTTAAACTTTTTTCAGAGCTCAAAAAAAGCTGGAAAAAAAACAATGAGTCAGACTCACCTTGCAGTCTTAGAATGTGCTCTCCGGCCATTGTGGCACCAAAAATAGTGGAAAGTAAGAAAAGAATTTGAACAATGTTATAAAGTTGTCCAGACATTTTTCTATATGGGTCTGTAATACATATTATTATGTCCAGATGAACAAGAATTGAGGGAGTGTCGTGGGAAGAGGATGGCAACGAAAAAAAAAATAATAAGAAGGACAACTGGTTGCTTGGTATGTGACGGATCGTATAATACCAAAAAACGTAATATTCAGAATAGAAAATAGGAGAGAGAGAGGTTTATGGTAATACATACAGCGTAGGCGCCAGTGATGTGGAGCGGCGCGACATTTCTCGAATTTCGAAATATTTAACAAAAATTACGATTTCAAAACTCCAACAGAACTGCTTGGAACAAAAATTGATTAAATAATAAACTTGAAAGTCGGCAAAAATGAGGTGATAAGAATGATAAGAGGAGGGGTGTGCTTTTTTTCTGT</canonical>
            <polymorphic>GAATGAAATGTCTGAATTTTCAAAAAAACCCCGCAAACTCAAAATAGATTTTGATTTTTATTTGGTTTCTCTTCAAAATCACGGAGCCCCCTAAAATCAAAAACCAACCGCGGAGCACTCGTAAACTCCATCATCTTTCTCTGGCTGATAATTGGTGATCTCCACGTAGGACGCATCTCTGGAAGAACAAGAAAAACTGGTTGCTGTTTAACTTGTAATTGATCATTCTGTCTTCTTACATTTTCGTTTTGACATATTCTGGTTTAATCACCGTCCCGCCACGCAGCCATCGTAACGATCCGGATTTTCCGCTTGGATGTTCACAACGAATCAACACACTGGATCCCTGCTCCACGCCTATTAGGGTTGTGCCAGCGTGAACACTTTCTGAAAAATTTTTGGAATTTTTTTCTTATCAATATTATTCAAAATGACTCATGTTTTCTATTTTTTTTCCACTTTAAACTTTTTTCAGAGCTCAAAAAAAGCTGGAAAAAAARCAATGAGTCAGACTCACCTTGCAGTCTTAGAATGTGCTCTCCGGCCATTGTGGCACCAAAAATAGTGGAAAGTAAGAAAAGAATTTGAACAATGTTATAAAGTTGTCCAGACATTTTTCTATATGGGTCTGTAATACATATTATTATGTCCAGATGAACAAGAATTGAGGGAGTGTCGTGGGAAGAGGATGGCAACGAAAAAAAAAATAATAAGAAGGACAACTGGTTGCTTGGTATGTGACGGATCGTATAATACCAAAAAACGTAATATTCAGAATAGAAAATAGGAGAGAGAGAGGTTTATGGTAATACATACAGCGTAGGCGCCAGTGATGTGGAGCGGCGCGACATTTCTCGAATTTCGAAATATTTAACAAAAATTACGATTTCAAAACTCCAACAGAACTGCTTGGAACAAAAATTGATTAAATAATAAACTTGAAAGTCGGCAAAAATGAGGTGATAAGAATGATAAGAGGAGGGGTGTGCTTTTTTTCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTGAACACTTTCTGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CATATAGAAAAATGTCTGGACAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTGAACACTTTCTGAAAAATTTTTGGAATTTTTTTCTTATCAATATTATTCAAAATGACTCATGTTTTCTATTTTTTTTCCACTTTAAACTTTTTTCAGAGCTCAAAAAAAGCTGGAAAAAAAACAATGAGTCAGACTCACCTTGCAGTCTTAGAATGTGCTCTCCGGCCATTGTGGCACCAAAAATAGTGGAAAGTAAGAAAAGAATTTGAACAATGTTATAAAGTTGTCCAGACATTTTTCTATATG</canonical_amplicon>
		<polymorphic_amplicon>CGTGAACACTTTCTGAAAAATTTTTGGAATTTTTTTCTTATCAATATTATTCAAAATGACTCATGTTTTCTATTTTTTTTCCACTTTAAACTTTTTTCAGAGCTCAAAAAAAGCTGGAAAAAAARCAATGAGTCAGACTCACCTTGCAGTCTTAGAATGTGCTCTCCGGCCATTGTGGCACCAAAAATAGTGGAAAGTAAGAAAAGAATTTGAACAATGTTATAAAGTTGTCCAGACATTTTTCTATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25939</snp_id>
        <super_contig>c001800837.Contig1</super_contig>
        <contig_pos>128933</contig_pos>
        <strand></strand>
        <context>CCAAATCTTC[G/T]GCTACCTTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGTTTGGCTTTCAAAAACCGGTTCTCAGCCACTAAACTGTCCAAATCTTC</left_flank>
        <right_flank>GCTACCTTAAATACGCCAATTAGAAAAGTTGTCAAATGTTGACGATGACA</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCCGCATGCCCAACACTCTAAAAATAATCTGTTTGATGTTATATGATGAAAAAGAACGACTTGTTAGCTCGTCGCGAGTGTGCCAACGCCATTTGCTTATCATTGCACAAATCGAGCAGAATGGTTGTAATGGCTCGATGGTCAGACTCGTCCAACTCGATTGCATGGGAGGTTAGCAGTTCGCGGACTGCAAAAAATTTTAAAATTGACAAAAATAACTGGAAGAACAATTTCCATTACTTTGTTTCATATTGATTACTGCGACACTCGGTTTTTCATCTCCTTCCCCTGCCTTTGGAGATCTGTTCAATGACTGAAACAGTGAATTTCAAGAACAAGGAGTCATGAAATGTGTGTTTTTTCTACCTGTACATTTACGGCTTCGGCCATCTGTTTGTATTTCGCCAGAGTCATTTTTATGGACTCGCTCTCCTCCTCTGCCGTGTTCAGTTTGGCTTTCAAAAACCGGTTCTCAGCCACTAAACTGTCCAAATCTTCGGCTACCTTAAATACGCCAATTAGAAAAGTTGTCAAATGTTGACGATGACACTAGAAAAAAACGAATGAGGACGGAAGTGGGAGAACGGGGGGAACAGAAAAAAAACTAACTCTTCGGGGATCTCCATTGAGTAGATAACTGAGTTCATTGCTCAGTCTCGCTACCTTCCTCTGCATTTCGTCGCGTTCCAGCAGGAGTTCTTCTTTGATACCCAGCATGGATTTTAAGTCGGATTCCAGTTCGCGGCACTGAAAAATTTTGAAATGTGAAAATATGTGTATATATATAGTACCGGTAAATAAGATATTGAAAAAACGTATTTTCAGTCGGTTTTTAGCTATTTTGAACTTTTTTCAAGAGTCTGGAGCTCAGCATTCAAGCTATCAAAAACTTTGGAAATTTTGGGAGGTGTAAAACTAGATTGCAAAATTTTCATTCGCAAAAATTTTCGAAAATGCTTAGTTTCTCAGCTATCTGCAGATTGTCGAAAGAAATCTTTT</canonical>
            <polymorphic>AGCCGCATGCCCAACACTCTAAAAATAATCTGTTTGATGTTATATGATGAAAAAGAACGACTTGTTAGCTCGTCGCGAGTGTGCCAACGCCATTTGCTTATCATTGCACAAATCGAGCAGAATGGTTGTAATGGCTCGATGGTCAGACTCGTCCAACTCGATTGCATGGGAGGTTAGCAGTTCGCGGACTGCAAAAAATTTTAAAATTGACAAAAATAACTGGAAGAACAATTTCCATTACTTTGTTTCATATTGATTACTGCGACACTCGGTTTTTCATCTCCTTCCCCTGCCTTTGGAGATCTGTTCAATGACTGAAACAGTGAATTTCAAGAACAAGGAGTCATGAAATGTGTGTTTTTTCTACCTGTACATTTACGGCTTCGGCCATCTGTTTGTATTTCGCCAGAGTCATTTTTATGGACTCGCTCTCCTCCTCTGCCGTGTTCAGTTTGGCTTTCAAAAACCGGTTCTCAGCCACTAAACTGTCCAAATCTTCKGCTACCTTAAATACGCCAATTAGAAAAGTTGTCAAATGTTGACGATGACACTAGAAAAAAACGAATGAGGACGGAAGTGGGAGAACGGGGGGAACAGAAAAAAAACTAACTCTTCGGGGATCTCCATTGAGTAGATAACTGAGTTCATTGCTCAGTCTCGCTACCTTCCTCTGCATTTCGTCGCGTTCCAGCAGGAGTTCTTCTTTGATACCCAGCATGGATTTTAAGTCGGATTCCAGTTCGCGGCACTGAAAAATTTTGAAATGTGAAAATATGTGTATATATATAGTACCGGTAAATAAGATATTGAAAAAACGTATTTTCAGTCGGTTTTTAGCTATTTTGAACTTTTTTCAAGAGTCTGGAGCTCAGCATTCAAGCTATCAAAAACTTTGGAAATTTTGGGAGGTGTAAAACTAGATTGCAAAATTTTCATTCGCAAAAATTTTCGAAAATGCTTAGTTTCTCAGCTATCTGCAGATTGTCGAAAGAAATCTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>336 247 90 69 66 66 30 30 24 21 13 6 2</canonical_bands>
                <polymorphic_bands>360 247 90 69 66 66 30 30 21 13 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTGAAACAGTGAATTTCAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTAGTGTCATCGTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GACTGAAACAGTGAATTTCAAGAACAAGGAGTCATGAAATGTGTGTTTTTTCTACCTGTACATTTACGGCTTCGGCCATCTGTTTGTATTTCGCCAGAGTCATTTTTATGGACTCGCTCTCCTCCTCTGCCGTGTTCAGTTTGGCTTTCAAAAACCGGTTCTCAGCCACTAAACTGTCCAAATCTTCGGCTACCTTAAATACGCCAATTAGAAAAGTTGTCAAATGTTGACGATGACACTAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GACTGAAACAGTGAATTTCAAGAACAAGGAGTCATGAAATGTGTGTTTTTTCTACCTGTACATTTACGGCTTCGGCCATCTGTTTGTATTTCGCCAGAGTCATTTTTATGGACTCGCTCTCCTCCTCTGCCGTGTTCAGTTTGGCTTTCAAAAACCGGTTCTCAGCCACTAAACTGTCCAAATCTTCKGCTACCTTAAATACGCCAATTAGAAAAGTTGTCAAATGTTGACGATGACACTAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25940</snp_id>
        <super_contig>c001800837.Contig1</super_contig>
        <contig_pos>129242</contig_pos>
        <strand></strand>
        <context>ataagatatt[G/A]aaaaaacgta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTGAAATGTGAAAATATGTGTATATATATAGTACCGGTAAATAAGATATT</left_flank>
        <right_flank>AAAAAACGTATTTTCAGTCGGTTTTTAGCTATTTTGAACTTTTTTCAAGA</right_flank>
        <qual_score>46</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGACTGAAACAGTGAATTTCAAGAACAAGGAGTCATGAAATGTGTGTTTTTTCTACCTGTACATTTACGGCTTCGGCCATCTGTTTGTATTTCGCCAGAGTCATTTTTATGGACTCGCTCTCCTCCTCTGCCGTGTTCAGTTTGGCTTTCAAAAACCGGTTCTCAGCCACTAAACTGTCCAAATCTTCGGCTACCTTAAATACGCCAATTAGAAAAGTTGTCAAATGTTGACGATGACACTAGAAAAAAACGAATGAGGACGGAAGTGGGAGAACGGGGGGAACAGAAAAAAAACTAACTCTTCGGGGATCTCCATTGAGTAGATAACTGAGTTCATTGCTCAGTCTCGCTACCTTCCTCTGCATTTCGTCGCGTTCCAGCAGGAGTTCTTCTTTGATACCCAGCATGGATTTTAAGTCGGATTCCAGTTCGCGGCACTGAAAAATTTTGAAATGTGAAAATATGTGTATATATATAGTACCGGTAAATAAGATATTGAAAAAACGTATTTTCAGTCGGTTTTTAGCTATTTTGAACTTTTTTCAAGAGTCTGGAGCTCAGCATTCAAGCTATCAAAAACTTTGGAAATTTTGGGAGGTGTAAAACTAGATTGCAAAATTTTCATTCGCAAAAATTTTCGAAAATGCTTAGTTTCTCAGCTATCTGCAGATTGTCGAAAGAAATCTTTTTTTTTTCATTTTTCCAGTACAAATACGAGACAGAAAAAGGTGTGTCTCAGAAATCGGCAAATAGCTGTAAAACTAGAGATATCCAAAATATTTTGAAAATACTAATTTTTCAATCTAGGGCTATTTTACACTCTCCAAAATATTTAAAATGATCGGAAACTTGACAGCCTTGCTCCAGACTCCTGAAAATGCTCAAAGTAACCGAAATTCATGAGAAAACTCGTTTTTGTATGTTATTGTACGAAATAATGTAAGACATACCTTCGTTTGCAGTTTTTCATAAGCTCCAAGCATCGCAGTTTCTTCGTC</canonical>
            <polymorphic>AATGACTGAAACAGTGAATTTCAAGAACAAGGAGTCATGAAATGTGTGTTTTTTCTACCTGTACATTTACGGCTTCGGCCATCTGTTTGTATTTCGCCAGAGTCATTTTTATGGACTCGCTCTCCTCCTCTGCCGTGTTCAGTTTGGCTTTCAAAAACCGGTTCTCAGCCACTAAACTGTCCAAATCTTCGGCTACCTTAAATACGCCAATTAGAAAAGTTGTCAAATGTTGACGATGACACTAGAAAAAAACGAATGAGGACGGAAGTGGGAGAACGGGGGGAACAGAAAAAAAACTAACTCTTCGGGGATCTCCATTGAGTAGATAACTGAGTTCATTGCTCAGTCTCGCTACCTTCCTCTGCATTTCGTCGCGTTCCAGCAGGAGTTCTTCTTTGATACCCAGCATGGATTTTAAGTCGGATTCCAGTTCGCGGCACTGAAAAATTTTGAAATGTGAAAATATGTGTATATATATAGTACCGGTAAATAAGATATTRAAAAAACGTATTTTCAGTCGGTTTTTAGCTATTTTGAACTTTTTTCAAGAGTCTGGAGCTCAGCATTCAAGCTATCAAAAACTTTGGAAATTTTGGGAGGTGTAAAACTAGATTGCAAAATTTTCATTCGCAAAAATTTTCGAAAATGCTTAGTTTCTCAGCTATCTGCAGATTGTCGAAAGAAATCTTTTTTTTTTCATTTTTCCAGTACAAATACGAGACAGAAAAAGGTGTGTCTCAGAAATCGGCAAATAGCTGTAAAACTAGAGATATCCAAAATATTTTGAAAATACTAATTTTTCAATCTAGGGCTATTTTACACTCTCCAAAATATTTAAAATGATCGGAAACTTGACAGCCTTGCTCCAGACTCCTGAAAATGCTCAAAGTAACCGAAATTCATGAGAAAACTCGTTTTTGTATGTTATTGTACGAAATAATGTAAGACATACCTTCGTTTGCAGTTTTTCATAAGCTCCAAGCATCGCAGTTTCTTCGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTAAGTCGGATTCCAGTTC</pcr_primer_p1>
		<pcr_primer_p2>GAAGGTATGTCTTACATTATTTCGTA</pcr_primer_p2>
		<pcr_amplicon_size>544</pcr_amplicon_size>
		<canonical_amplicon>TTTTAAGTCGGATTCCAGTTCGCGGCACTGAAAAATTTTGAAATGTGAAAATATGTGTATATATATAGTACCGGTAAATAAGATATTGAAAAAACGTATTTTCAGTCGGTTTTTAGCTATTTTGAACTTTTTTCAAGAGTCTGGAGCTCAGCATTCAAGCTATCAAAAACTTTGGAAATTTTGGGAGGTGTAAAACTAGATTGCAAAATTTTCATTCGCAAAAATTTTCGAAAATGCTTAGTTTCTCAGCTATCTGCAGATTGTCGAAAGAAATCTTTTTTTTTTCATTTTTCCAGTACAAATACGAGACAGAAAAAGGTGTGTCTCAGAAATCGGCAAATAGCTGTAAAACTAGAGATATCCAAAATATTTTGAAAATACTAATTTTTCAATCTAGGGCTATTTTACACTCTCCAAAATATTTAAAATGATCGGAAACTTGACAGCCTTGCTCCAGACTCCTGAAAATGCTCAAAGTAACCGAAATTCATGAGAAAACTCGTTTTTGTATGTTATTGTACGAAATAATGTAAGACATACCTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTAAGTCGGATTCCAGTTCGCGGCACTGAAAAATTTTGAAATGTGAAAATATGTGTATATATATAGTACCGGTAAATAAGATATTRAAAAAACGTATTTTCAGTCGGTTTTTAGCTATTTTGAACTTTTTTCAAGAGTCTGGAGCTCAGCATTCAAGCTATCAAAAACTTTGGAAATTTTGGGAGGTGTAAAACTAGATTGCAAAATTTTCATTCGCAAAAATTTTCGAAAATGCTTAGTTTCTCAGCTATCTGCAGATTGTCGAAAGAAATCTTTTTTTTTTCATTTTTCCAGTACAAATACGAGACAGAAAAAGGTGTGTCTCAGAAATCGGCAAATAGCTGTAAAACTAGAGATATCCAAAATATTTTGAAAATACTAATTTTTCAATCTAGGGCTATTTTACACTCTCCAAAATATTTAAAATGATCGGAAACTTGACAGCCTTGCTCCAGACTCCTGAAAATGCTCAAAGTAACCGAAATTCATGAGAAAACTCGTTTTTGTATGTTATTGTACGAAATAATGTAAGACATACCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25941</snp_id>
        <super_contig>c001800837.Contig1</super_contig>
        <contig_pos>129654</contig_pos>
        <strand></strand>
        <context>atgagaaaac[T/A]cgtttttgta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGCTCCAGACTCCTGAAAATGCTCAAAGTAACCGAAATTCATGAGAAAAC</left_flank>
        <right_flank>CGTTTTTGTATGTTATTGTACGAAATAATGTAAGACATACCTTCGTTTGC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTAAGTCGGATTCCAGTTCGCGGCACTGAAAAATTTTGAAATGTGAAAATATGTGTATATATATAGTACCGGTAAATAAGATATTGAAAAAACGTATTTTCAGTCGGTTTTTAGCTATTTTGAACTTTTTTCAAGAGTCTGGAGCTCAGCATTCAAGCTATCAAAAACTTTGGAAATTTTGGGAGGTGTAAAACTAGATTGCAAAATTTTCATTCGCAAAAATTTTCGAAAATGCTTAGTTTCTCAGCTATCTGCAGATTGTCGAAAGAAATCTTTTTTTTTTCATTTTTCCAGTACAAATACGAGACAGAAAAAGGTGTGTCTCAGAAATCGGCAAATAGCTGTAAAACTAGAGATATCCAAAATATTTTGAAAATACTAATTTTTCAATCTAGGGCTATTTTACACTCTCCAAAATATTTAAAATGATCGGAAACTTGACAGCCTTGCTCCAGACTCCTGAAAATGCTCAAAGTAACCGAAATTCATGAGAAAACTCGTTTTTGTATGTTATTGTACGAAATAATGTAAGACATACCTTCGTTTGCAGTTTTTCATAAGCTCCAAGCATCGCAGTTTCTTCGTCATCATTTGAAAGACAGGTCCGAACCATACCGCCCATTTTTTCAACCTGAAATTTGTTTTAGAAAATTGACTTCAATTATTTAAGCTACTGAAATATTCTGGACAGAAAGAAGCGTAAAAAAGGAACATTCTTACCAAAATAAAAAAAAATGTTTTACGAGAAAATGTCTGGAATAGGGGATTTCATCCAGTTTCAAGTGTAAAAACAACTTTTATGTTTGAAAACGTCTAGAAATTGAGAAAAAGTCATTTTTGAAAATTAATTTTTTTAAAGCGCAATTTTGGTACTGTAACCAGCTTCTAAAATGTTCAGAAATGTCTAGATAGGCCATTTTCATTTTATCCGGAACTTTTGATTGTAATCGGGGAGAACAAAGTGTTGCGGTTCCCATGTAGAGCCATTTTTATACTTC</canonical>
            <polymorphic>TTTTAAGTCGGATTCCAGTTCGCGGCACTGAAAAATTTTGAAATGTGAAAATATGTGTATATATATAGTACCGGTAAATAAGATATTGAAAAAACGTATTTTCAGTCGGTTTTTAGCTATTTTGAACTTTTTTCAAGAGTCTGGAGCTCAGCATTCAAGCTATCAAAAACTTTGGAAATTTTGGGAGGTGTAAAACTAGATTGCAAAATTTTCATTCGCAAAAATTTTCGAAAATGCTTAGTTTCTCAGCTATCTGCAGATTGTCGAAAGAAATCTTTTTTTTTTCATTTTTCCAGTACAAATACGAGACAGAAAAAGGTGTGTCTCAGAAATCGGCAAATAGCTGTAAAACTAGAGATATCCAAAATATTTTGAAAATACTAATTTTTCAATCTAGGGCTATTTTACACTCTCCAAAATATTTAAAATGATCGGAAACTTGACAGCCTTGCTCCAGACTCCTGAAAATGCTCAAAGTAACCGAAATTCATGAGAAAACWCGTTTTTGTATGTTATTGTACGAAATAATGTAAGACATACCTTCGTTTGCAGTTTTTCATAAGCTCCAAGCATCGCAGTTTCTTCGTCATCATTTGAAAGACAGGTCCGAACCATACCGCCCATTTTTTCAACCTGAAATTTGTTTTAGAAAATTGACTTCAATTATTTAAGCTACTGAAATATTCTGGACAGAAAGAAGCGTAAAAAAGGAACATTCTTACCAAAATAAAAAAAAATGTTTTACGAGAAAATGTCTGGAATAGGGGATTTCATCCAGTTTCAAGTGTAAAAACAACTTTTATGTTTGAAAACGTCTAGAAATTGAGAAAAAGTCATTTTTGAAAATTAATTTTTTTAAAGCGCAATTTTGGTACTGTAACCAGCTTCTAAAATGTTCAGAAATGTCTAGATAGGCCATTTTCATTTTATCCGGAACTTTTGATTGTAATCGGGGAGAACAAAGTGTTGCGGTTCCCATGTAGAGCCATTTTTATACTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAAATGTGAAAATATGTGTA</pcr_primer_p1>
		<pcr_primer_p2>CTGCAAACGAAGGTATGTCT</pcr_primer_p2>
		<pcr_amplicon_size>517</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAAATGTGAAAATATGTGTATATATATAGTACCGGTAAATAAGATATTGAAAAAACGTATTTTCAGTCGGTTTTTAGCTATTTTGAACTTTTTTCAAGAGTCTGGAGCTCAGCATTCAAGCTATCAAAAACTTTGGAAATTTTGGGAGGTGTAAAACTAGATTGCAAAATTTTCATTCGCAAAAATTTTCGAAAATGCTTAGTTTCTCAGCTATCTGCAGATTGTCGAAAGAAATCTTTTTTTTTTCATTTTTCCAGTACAAATACGAGACAGAAAAAGGTGTGTCTCAGAAATCGGCAAATAGCTGTAAAACTAGAGATATCCAAAATATTTTGAAAATACTAATTTTTCAATCTAGGGCTATTTTACACTCTCCAAAATATTTAAAATGATCGGAAACTTGACAGCCTTGCTCCAGACTCCTGAAAATGCTCAAAGTAACCGAAATTCATGAGAAAACTCGTTTTTGTATGTTATTGTACGAAATAATGTAAGACATACCTTCGTTTGCAG</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAAATGTGAAAATATGTGTATATATATAGTACCGGTAAATAAGATATTGAAAAAACGTATTTTCAGTCGGTTTTTAGCTATTTTGAACTTTTTTCAAGAGTCTGGAGCTCAGCATTCAAGCTATCAAAAACTTTGGAAATTTTGGGAGGTGTAAAACTAGATTGCAAAATTTTCATTCGCAAAAATTTTCGAAAATGCTTAGTTTCTCAGCTATCTGCAGATTGTCGAAAGAAATCTTTTTTTTTTCATTTTTCCAGTACAAATACGAGACAGAAAAAGGTGTGTCTCAGAAATCGGCAAATAGCTGTAAAACTAGAGATATCCAAAATATTTTGAAAATACTAATTTTTCAATCTAGGGCTATTTTACACTCTCCAAAATATTTAAAATGATCGGAAACTTGACAGCCTTGCTCCAGACTCCTGAAAATGCTCAAAGTAACCGAAATTCATGAGAAAACWCGTTTTTGTATGTTATTGTACGAAATAATGTAAGACATACCTTCGTTTGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25942</snp_id>
        <super_contig>c001800837.Contig1</super_contig>
        <contig_pos>129878</contig_pos>
        <strand>+</strand>
        <context>CATTCTTACC[A/G]AAATAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACTGAAATATTCTGGACAGAAAGAAGCGTAAAAAAGGAACATTCTTACC</left_flank>
        <right_flank>AAATAAAAAAAAATGTTTTACGAGAAAATGTCTGGAATAGGGGATTTCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCGAAAATGCTTAGTTTCTCAGCTATCTGCAGATTGTCGAAAGAAATCTTTTTTTTTTCATTTTTCCAGTACAAATACGAGACAGAAAAAGGTGTGTCTCAGAAATCGGCAAATAGCTGTAAAACTAGAGATATCCAAAATATTTTGAAAATACTAATTTTTCAATCTAGGGCTATTTTACACTCTCCAAAATATTTAAAATGATCGGAAACTTGACAGCCTTGCTCCAGACTCCTGAAAATGCTCAAAGTAACCGAAATTCATGAGAAAACTCGTTTTTGTATGTTATTGTACGAAATAATGTAAGACATACCTTCGTTTGCAGTTTTTCATAAGCTCCAAGCATCGCAGTTTCTTCGTCATCATTTGAAAGACAGGTCCGAACCATACCGCCCATTTTTTCAACCTGAAATTTGTTTTAGAAAATTGACTTCAATTATTTAAGCTACTGAAATATTCTGGACAGAAAGAAGCGTAAAAAAGGAACATTCTTACCAAAATAAAAAAAAATGTTTTACGAGAAAATGTCTGGAATAGGGGATTTCATCCAGTTTCAAGTGTAAAAACAACTTTTATGTTTGAAAACGTCTAGAAATTGAGAAAAAGTCATTTTTGAAAATTAATTTTTTTAAAGCGCAATTTTGGTACTGTAACCAGCTTCTAAAATGTTCAGAAATGTCTAGATAGGCCATTTTCATTTTATCCGGAACTTTTGATTGTAATCGGGGAGAACAAAGTGTTGCGGTTCCCATGTAGAGCCATTTTTATACTTCAAATTACTTTTGAAGAAAAAAACCTTCTTTTGAGAAGAACCCTGCCAGTGTTTTCATTTTTCCTTCCTAGTGTATTTTTCACCAATTTTCTAGTACCTTTCAAAGCTGAAAAATTGTTTTAAAACATTCATTTCCATCGCAATACTTTTAATCGAAATTTCCAGAATTTTCAGAACGAAAAATCGCCGACAATACAATACCGACTTTTTTTTTCAAATACAAAA</canonical>
            <polymorphic>TTTTCGAAAATGCTTAGTTTCTCAGCTATCTGCAGATTGTCGAAAGAAATCTTTTTTTTTTCATTTTTCCAGTACAAATACGAGACAGAAAAAGGTGTGTCTCAGAAATCGGCAAATAGCTGTAAAACTAGAGATATCCAAAATATTTTGAAAATACTAATTTTTCAATCTAGGGCTATTTTACACTCTCCAAAATATTTAAAATGATCGGAAACTTGACAGCCTTGCTCCAGACTCCTGAAAATGCTCAAAGTAACCGAAATTCATGAGAAAACTCGTTTTTGTATGTTATTGTACGAAATAATGTAAGACATACCTTCGTTTGCAGTTTTTCATAAGCTCCAAGCATCGCAGTTTCTTCGTCATCATTTGAAAGACAGGTCCGAACCATACCGCCCATTTTTTCAACCTGAAATTTGTTTTAGAAAATTGACTTCAATTATTTAAGCTACTGAAATATTCTGGACAGAAAGAAGCGTAAAAAAGGAACATTCTTACCRAAATAAAAAAAAATGTTTTACGAGAAAATGTCTGGAATAGGGGATTTCATCCAGTTTCAAGTGTAAAAACAACTTTTATGTTTGAAAACGTCTAGAAATTGAGAAAAAGTCATTTTTGAAAATTAATTTTTTTAAAGCGCAATTTTGGTACTGTAACCAGCTTCTAAAATGTTCAGAAATGTCTAGATAGGCCATTTTCATTTTATCCGGAACTTTTGATTGTAATCGGGGAGAACAAAGTGTTGCGGTTCCCATGTAGAGCCATTTTTATACTTCAAATTACTTTTGAAGAAAAAAACCTTCTTTTGAGAAGAACCCTGCCAGTGTTTTCATTTTTCCTTCCTAGTGTATTTTTCACCAATTTTCTAGTACCTTTCAAAGCTGAAAAATTGTTTTAAAACATTCATTTCCATCGCAATACTTTTAATCGAAATTTCCAGAATTTTCAGAACGAAAAATCGCCGACAATACAATACCGACTTTTTTTTTCAAATACAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCTACTGAAATATTCTGGACA</pcr_primer_p1>
		<pcr_primer_p2>GATAAAATGAAAATGGCCTATCTA</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>AAGCTACTGAAATATTCTGGACAGAAAGAAGCGTAAAAAAGGAACATTCTTACCAAAATAAAAAAAAATGTTTTACGAGAAAATGTCTGGAATAGGGGATTTCATCCAGTTTCAAGTGTAAAAACAACTTTTATGTTTGAAAACGTCTAGAAATTGAGAAAAAGTCATTTTTGAAAATTAATTTTTTTAAAGCGCAATTTTGGTACTGTAACCAGCTTCTAAAATGTTCAGAAATGTCTAGATAGGCCATTTTCATTTTATC</canonical_amplicon>
		<polymorphic_amplicon>AAGCTACTGAAATATTCTGGACAGAAAGAAGCGTAAAAAAGGAACATTCTTACCRAAATAAAAAAAAATGTTTTACGAGAAAATGTCTGGAATAGGGGATTTCATCCAGTTTCAAGTGTAAAAACAACTTTTATGTTTGAAAACGTCTAGAAATTGAGAAAAAGTCATTTTTGAAAATTAATTTTTTTAAAGCGCAATTTTGGTACTGTAACCAGCTTCTAAAATGTTCAGAAATGTCTAGATAGGCCATTTTCATTTTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25943</snp_id>
        <super_contig>c001800837.Contig1</super_contig>
        <contig_pos>129890</contig_pos>
        <strand>+</strand>
        <context>AATAAAAAAA[A/T]ATGttttacg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGGACAGAAAGAAGCGTAAAAAAGGAACATTCTTACCAAAATAAAAAAA</left_flank>
        <right_flank>ATGTTTTACGAGAAAATGTCTGGAATAGGGGATTTCATCCAGTTTCAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTAGTTTCTCAGCTATCTGCAGATTGTCGAAAGAAATCTTTTTTTTTTCATTTTTCCAGTACAAATACGAGACAGAAAAAGGTGTGTCTCAGAAATCGGCAAATAGCTGTAAAACTAGAGATATCCAAAATATTTTGAAAATACTAATTTTTCAATCTAGGGCTATTTTACACTCTCCAAAATATTTAAAATGATCGGAAACTTGACAGCCTTGCTCCAGACTCCTGAAAATGCTCAAAGTAACCGAAATTCATGAGAAAACTCGTTTTTGTATGTTATTGTACGAAATAATGTAAGACATACCTTCGTTTGCAGTTTTTCATAAGCTCCAAGCATCGCAGTTTCTTCGTCATCATTTGAAAGACAGGTCCGAACCATACCGCCCATTTTTTCAACCTGAAATTTGTTTTAGAAAATTGACTTCAATTATTTAAGCTACTGAAATATTCTGGACAGAAAGAAGCGTAAAAAAGGAACATTCTTACCAAAATAAAAAAAAATGTTTTACGAGAAAATGTCTGGAATAGGGGATTTCATCCAGTTTCAAGTGTAAAAACAACTTTTATGTTTGAAAACGTCTAGAAATTGAGAAAAAGTCATTTTTGAAAATTAATTTTTTTAAAGCGCAATTTTGGTACTGTAACCAGCTTCTAAAATGTTCAGAAATGTCTAGATAGGCCATTTTCATTTTATCCGGAACTTTTGATTGTAATCGGGGAGAACAAAGTGTTGCGGTTCCCATGTAGAGCCATTTTTATACTTCAAATTACTTTTGAAGAAAAAAACCTTCTTTTGAGAAGAACCCTGCCAGTGTTTTCATTTTTCCTTCCTAGTGTATTTTTCACCAATTTTCTAGTACCTTTCAAAGCTGAAAAATTGTTTTAAAACATTCATTTCCATCGCAATACTTTTAATCGAAATTTCCAGAATTTTCAGAACGAAAAATCGCCGACAATACAATACCGACTTTTTTTTTCAAATACAAAAAAAACCAACCTC</canonical>
            <polymorphic>CTTAGTTTCTCAGCTATCTGCAGATTGTCGAAAGAAATCTTTTTTTTTTCATTTTTCCAGTACAAATACGAGACAGAAAAAGGTGTGTCTCAGAAATCGGCAAATAGCTGTAAAACTAGAGATATCCAAAATATTTTGAAAATACTAATTTTTCAATCTAGGGCTATTTTACACTCTCCAAAATATTTAAAATGATCGGAAACTTGACAGCCTTGCTCCAGACTCCTGAAAATGCTCAAAGTAACCGAAATTCATGAGAAAACTCGTTTTTGTATGTTATTGTACGAAATAATGTAAGACATACCTTCGTTTGCAGTTTTTCATAAGCTCCAAGCATCGCAGTTTCTTCGTCATCATTTGAAAGACAGGTCCGAACCATACCGCCCATTTTTTCAACCTGAAATTTGTTTTAGAAAATTGACTTCAATTATTTAAGCTACTGAAATATTCTGGACAGAAAGAAGCGTAAAAAAGGAACATTCTTACCAAAATAAAAAAAWATGTTTTACGAGAAAATGTCTGGAATAGGGGATTTCATCCAGTTTCAAGTGTAAAAACAACTTTTATGTTTGAAAACGTCTAGAAATTGAGAAAAAGTCATTTTTGAAAATTAATTTTTTTAAAGCGCAATTTTGGTACTGTAACCAGCTTCTAAAATGTTCAGAAATGTCTAGATAGGCCATTTTCATTTTATCCGGAACTTTTGATTGTAATCGGGGAGAACAAAGTGTTGCGGTTCCCATGTAGAGCCATTTTTATACTTCAAATTACTTTTGAAGAAAAAAACCTTCTTTTGAGAAGAACCCTGCCAGTGTTTTCATTTTTCCTTCCTAGTGTATTTTTCACCAATTTTCTAGTACCTTTCAAAGCTGAAAAATTGTTTTAAAACATTCATTTCCATCGCAATACTTTTAATCGAAATTTCCAGAATTTTCAGAACGAAAAATCGCCGACAATACAATACCGACTTTTTTTTTCAAATACAAAAAAAACCAACCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAATATTCTGGACAGAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>GGCCTATCTAGACATTTCTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TGAAATATTCTGGACAGAAAGAAGCGTAAAAAAGGAACATTCTTACCAAAATAAAAAAAAATGTTTTACGAGAAAATGTCTGGAATAGGGGATTTCATCCAGTTTCAAGTGTAAAAACAACTTTTATGTTTGAAAACGTCTAGAAATTGAGAAAAAGTCATTTTTGAAAATTAATTTTTTTAAAGCGCAATTTTGGTACTGTAACCAGCTTCTAAAATGTTCAGAAATGTCTAGATAGGCC</canonical_amplicon>
		<polymorphic_amplicon>TGAAATATTCTGGACAGAAAGAAGCGTAAAAAAGGAACATTCTTACCAAAATAAAAAAAWATGTTTTACGAGAAAATGTCTGGAATAGGGGATTTCATCCAGTTTCAAGTGTAAAAACAACTTTTATGTTTGAAAACGTCTAGAAATTGAGAAAAAGTCATTTTTGAAAATTAATTTTTTTAAAGCGCAATTTTGGTACTGTAACCAGCTTCTAAAATGTTCAGAAATGTCTAGATAGGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25944</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>5811</contig_pos>
        <strand></strand>
        <context>gtcaactgat[A/G]aaatactttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCTAATTATCTCCATTCCTGTAAACGATATCAAAATGTTGTCAACTGAT</left_flank>
        <right_flank>AAATACTTTTGAAACTATGATAAATATTTTGTTAGTTGATTACTTTCTGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACAAAATTGAATGAGACAAAAGAGGGAACAACTCACTGGATCCCGGTTTTTGGAACATAAATCGGAGGGTACAAAAATTCGGCAGTACAAGGGGGTGCGTATTTTTGAAGGCATTTTGTAGCCCGGAACAGCTTTGTACCACGAAGACTAAAAACATTGTACCCTCCACATTATTCGCCGAGTTTTTTTGAAATAATTTTTTTTCGCGCTTTTTCTGATAGAGTACAGGCTCAGTAGCTACCCTTTCAGCCTTCAATTCGAGACCAACGATTTTTTACTACGGTATATGAATATTAGCGTCCGAGCGCATTTATACGACGTCCTGAAAAAACAGTAAATGGAAAAAACCGTGCCGAAGAAAAATGAATTATATTTTAAAAACCGTGTAAACAGAAGTTTGAGGTGCTTGCCGTATTTCCTCTAATCCACTTAAACTATCAACTTTGAGCCTAATTATCTCCATTCCTGTAAACGATATCAAAATGTTGTCAACTGATAAAATACTTTTGAAACTATGATAAATATTTTGTTAGTTGATTACTTTCTGATATCTTTTGTAGGAATTGAGATGTCTGAACTTAAAGTTGACAGTCCCGGTGAGCTTATGAATATTAGAGAAAATAGGTAAATAACGTTTTATCATTCAACATGCTTAAAATTACCAATACGTTTTGATTAAGTTTCAGAAAATATTTGGACTACTATAGTAGAACCACAAAAGCTTATTTATACAATAATTTTACAAAATAATGTAGTACAAATTAAAAATTAAATTTAGTACGAAATTTTTAGTGTTACAAAAAATCTAAATAAAAATGATCGGATCAAGGAGTTGATCCTTTTCGGAGTCATTCTCATGAAACAGTCCAGAAACTGAATACTTTTCGTTGAAGACACCAATTTGATCGAAACCAAACCATCCGGCGAATGGATTTGAAGGTTTTGTGGTTTTCGGAAGGAACCCTTTGGATTCTCCAAACTTTTGAAGGTTCTGTGTG</canonical>
            <polymorphic>AGACAAAATTGAATGAGACAAAAGAGGGAACAACTCACTGGATCCCGGTTTTTGGAACATAAATCGGAGGGTACAAAAATTCGGCAGTACAAGGGGGTGCGTATTTTTGAAGGCATTTTGTAGCCCGGAACAGCTTTGTACCACGAAGACTAAAAACATTGTACCCTCCACATTATTCGCCGAGTTTTTTTGAAATAATTTTTTTTCGCGCTTTTTCTGATAGAGTACAGGCTCAGTAGCTACCCTTTCAGCCTTCAATTCGAGACCAACGATTTTTTACTACGGTATATGAATATTAGCGTCCGAGCGCATTTATACGACGTCCTGAAAAAACAGTAAATGGAAAAAACCGTGCCGAAGAAAAATGAATTATATTTTAAAAACCGTGTAAACAGAAGTTTGAGGTGCTTGCCGTATTTCCTCTAATCCACTTAAACTATCAACTTTGAGCCTAATTATCTCCATTCCTGTAAACGATATCAAAATGTTGTCAACTGATRAAATACTTTTGAAACTATGATAAATATTTTGTTAGTTGATTACTTTCTGATATCTTTTGTAGGAATTGAGATGTCTGAACTTAAAGTTGACAGTCCCGGTGAGCTTATGAATATTAGAGAAAATAGGTAAATAACGTTTTATCATTCAACATGCTTAAAATTACCAATACGTTTTGATTAAGTTTCAGAAAATATTTGGACTACTATAGTAGAACCACAAAAGCTTATTTATACAATAATTTTACAAAATAATGTAGTACAAATTAAAAATTAAATTTAGTACGAAATTTTTAGTGTTACAAAAAATCTAAATAAAAATGATCGGATCAAGGAGTTGATCCTTTTCGGAGTCATTCTCATGAAACAGTCCAGAAACTGAATACTTTTCGTTGAAGACACCAATTTGATCGAAACCAAACCATCCGGCGAATGGATTTGAAGGTTTTGTGGTTTTCGGAAGGAACCCTTTGGATTCTCCAAACTTTTGAAGGTTCTGTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTAAAAACCGTGTAAACAGA</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCTAATATTCATAAGCTCACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTTAAAAACCGTGTAAACAGAAGTTTGAGGTGCTTGCCGTATTTCCTCTAATCCACTTAAACTATCAACTTTGAGCCTAATTATCTCCATTCCTGTAAACGATATCAAAATGTTGTCAACTGATAAAATACTTTTGAAACTATGATAAATATTTTGTTAGTTGATTACTTTCTGATATCTTTTGTAGGAATTGAGATGTCTGAACTTAAAGTTGACAGTCCCGGTGAGCTTATGAATATTAGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTAAAAACCGTGTAAACAGAAGTTTGAGGTGCTTGCCGTATTTCCTCTAATCCACTTAAACTATCAACTTTGAGCCTAATTATCTCCATTCCTGTAAACGATATCAAAATGTTGTCAACTGATRAAATACTTTTGAAACTATGATAAATATTTTGTTAGTTGATTACTTTCTGATATCTTTTGTAGGAATTGAGATGTCTGAACTTAAAGTTGACAGTCCCGGTGAGCTTATGAATATTAGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25945</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>23211</contig_pos>
        <strand></strand>
        <context>agaagaagca[A/G]gaaACGACGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTGAATCTAAAGAAGAAGAAGGAGTGGAAAGGAGAAGAAGAAGAAGCA</left_flank>
        <right_flank>GAAACGACGGATCACACGGCCCTTCTTTTTTCTTTCATTCCATTACAAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTGATATCTCCTGAAGGAACCGAGATAATTCAGCTCAAACTTGAGTGTCTGAAAGTTCCGTTTAAATTTTTTCTTTGCCTGAAAGTGCCGTCTAAATTTCTCATTGATTCATAAATCACCAAACTTTGAAATGAAGACTGAACTCGAATCTGAATGTATTGTTTAGGAGTATCAGCTCTTTCACAATTCGGTTCTTCCACTACATTAATCGGATCCCTGTCTATTAGTCTGTTCTCTATTAATTAATTCTTCTTCCCATAGAATATTCAACAAGTTTCAACAAGCACTTCTAGAGAGGCCATTGCTCCTGCCCCACAGATACATTTTCGTTTTCTTTCTCTTCTTCAGAAACTTCTTCGTTTTCTTCAACTACATCTTCTTCTACTTCTTTATCTCCTTCTACTTCACTCGTTTTGTTCCGATTGGAGATGAATCTGAGGAGAAGAATTTGAATCTAAAGAAGAAGAAGGAGTGGAAAGGAGAAGAAGAAGAAGCAAGAAACGACGGATCACACGGCCCTTCTTTTTTCTTTCATTCCATTACAAGTTGCACTCAGATTTTCAACTGAAAACTTGTTTTATCTCCCTCTCTCTCTCTCTTTTGGGATTTCGTTTTGATCATTTTTGACCAATTCCTTTTCTTCAGGCATTTTCCCCCATTCCTGATCCATCTCTCTTCTTCCAGCAATTCTACAGTATTTCACTTCTACAAGAATCTCTGAGGCTGAAAAAAAAGATACAAGTTGCGTCTCCTAGATTTTTCAAAGGTTTTCATGTGCTCTCTAAGTCTGCGTCTCTCAATTCGAAACTCTATTTTTCTGATTCAATTTAAGCGCCAAATTTGAATATGACCTGAATAGAGAGTTGGAAGTGCAGGAGAGCTCTTTTCTTGAGATTTTCGATAGAATCCGTGTCTTTTTTGAATAGCGGTACTCTAATGAAATAGAGTAGTGTGTCTGGGCGGGGGAAAAATAATCCTTGAACAACAACTACTGTAG</canonical>
            <polymorphic>TGTTTGATATCTCCTGAAGGAACCGAGATAATTCAGCTCAAACTTGAGTGTCTGAAAGTTCCGTTTAAATTTTTTCTTTGCCTGAAAGTGCCGTCTAAATTTCTCATTGATTCATAAATCACCAAACTTTGAAATGAAGACTGAACTCGAATCTGAATGTATTGTTTAGGAGTATCAGCTCTTTCACAATTCGGTTCTTCCACTACATTAATCGGATCCCTGTCTATTAGTCTGTTCTCTATTAATTAATTCTTCTTCCCATAGAATATTCAACAAGTTTCAACAAGCACTTCTAGAGAGGCCATTGCTCCTGCCCCACAGATACATTTTCGTTTTCTTTCTCTTCTTCAGAAACTTCTTCGTTTTCTTCAACTACATCTTCTTCTACTTCTTTATCTCCTTCTACTTCACTCGTTTTGTTCCGATTGGAGATGAATCTGAGGAGAAGAATTTGAATCTAAAGAAGAAGAAGGAGTGGAAAGGAGAAGAAGAAGAAGCARGAAACGACGGATCACACGGCCCTTCTTTTTTCTTTCATTCCATTACAAGTTGCACTCAGATTTTCAACTGAAAACTTGTTTTATCTCCCTCTCTCTCTCTCTTTTGGGATTTCGTTTTGATCATTTTTGACCAATTCCTTTTCTTCAGGCATTTTCCCCCATTCCTGATCCATCTCTCTTCTTCCAGCAATTCTACAGTATTTCACTTCTACAAGAATCTCTGAGGCTGAAAAAAAAGATACAAGTTGCGTCTCCTAGATTTTTCAAAGGTTTTCATGTGCTCTCTAAGTCTGCGTCTCTCAATTCGAAACTCTATTTTTCTGATTCAATTTAAGCGCCAAATTTGAATATGACCTGAATAGAGAGTTGGAAGTGCAGGAGAGCTCTTTTCTTGAGATTTTCGATAGAATCCGTGTCTTTTTTGAATAGCGGTACTCTAATGAAATAGAGTAGTGTGTCTGGGCGGGGGAAAAATAATCCTTGAACAACAACTACTGTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTGAGGAGAAGAATTTGAATC</pcr_primer_p1>
		<pcr_primer_p2>GGAAGAAGAGAGATGGATCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTGAGGAGAAGAATTTGAATCTAAAGAAGAAGAAGGAGTGGAAAGGAGAAGAAGAAGAAGCAAGAAACGACGGATCACACGGCCCTTCTTTTTTCTTTCATTCCATTACAAGTTGCACTCAGATTTTCAACTGAAAACTTGTTTTATCTCCCTCTCTCTCTCTCTTTTGGGATTTCGTTTTGATCATTTTTGACCAATTCCTTTTCTTCAGGCATTTTCCCCCATTCCTGATCCATCTCTCTTCTTCC</canonical_amplicon>
		<polymorphic_amplicon>ATCTGAGGAGAAGAATTTGAATCTAAAGAAGAAGAAGGAGTGGAAAGGAGAAGAAGAAGAAGCARGAAACGACGGATCACACGGCCCTTCTTTTTTCTTTCATTCCATTACAAGTTGCACTCAGATTTTCAACTGAAAACTTGTTTTATCTCCCTCTCTCTCTCTCTTTTGGGATTTCGTTTTGATCATTTTTGACCAATTCCTTTTCTTCAGGCATTTTCCCCCATTCCTGATCCATCTCTCTTCTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25946</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>23295</contig_pos>
        <strand>+</strand>
        <context>ACTTGTTTTA[A/G]CTCCCTCTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCATTCCATTACAAGTTGCACTCAGATTTTCAACTGAAAACTTGTTTTA</left_flank>
        <right_flank>CTCCCTCTCTCTCTCTCTTTTGGGATTTCGTTTTGATCATTTTTGACCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTGCCGTCTAAATTTCTCATTGATTCATAAATCACCAAACTTTGAAATGAAGACTGAACTCGAATCTGAATGTATTGTTTAGGAGTATCAGCTCTTTCACAATTCGGTTCTTCCACTACATTAATCGGATCCCTGTCTATTAGTCTGTTCTCTATTAATTAATTCTTCTTCCCATAGAATATTCAACAAGTTTCAACAAGCACTTCTAGAGAGGCCATTGCTCCTGCCCCACAGATACATTTTCGTTTTCTTTCTCTTCTTCAGAAACTTCTTCGTTTTCTTCAACTACATCTTCTTCTACTTCTTTATCTCCTTCTACTTCACTCGTTTTGTTCCGATTGGAGATGAATCTGAGGAGAAGAATTTGAATCTAAAGAAGAAGAAGGAGTGGAAAGGAGAAGAAGAAGAAGCAAGAAACGACGGATCACACGGCCCTTCTTTTTTCTTTCATTCCATTACAAGTTGCACTCAGATTTTCAACTGAAAACTTGTTTTATCTCCCTCTCTCTCTCTCTTTTGGGATTTCGTTTTGATCATTTTTGACCAATTCCTTTTCTTCAGGCATTTTCCCCCATTCCTGATCCATCTCTCTTCTTCCAGCAATTCTACAGTATTTCACTTCTACAAGAATCTCTGAGGCTGAAAAAAAAGATACAAGTTGCGTCTCCTAGATTTTTCAAAGGTTTTCATGTGCTCTCTAAGTCTGCGTCTCTCAATTCGAAACTCTATTTTTCTGATTCAATTTAAGCGCCAAATTTGAATATGACCTGAATAGAGAGTTGGAAGTGCAGGAGAGCTCTTTTCTTGAGATTTTCGATAGAATCCGTGTCTTTTTTGAATAGCGGTACTCTAATGAAATAGAGTAGTGTGTCTGGGCGGGGGAAAAATAATCCTTGAACAACAACTACTGTAGATGTTTTGAAGATCAGAGTTTTTTGAGAACGTATTCGACTGTTTGGGATATTTTTTATTGTAATAGCAAAATAATGATTTCAAA</canonical>
            <polymorphic>AAAGTGCCGTCTAAATTTCTCATTGATTCATAAATCACCAAACTTTGAAATGAAGACTGAACTCGAATCTGAATGTATTGTTTAGGAGTATCAGCTCTTTCACAATTCGGTTCTTCCACTACATTAATCGGATCCCTGTCTATTAGTCTGTTCTCTATTAATTAATTCTTCTTCCCATAGAATATTCAACAAGTTTCAACAAGCACTTCTAGAGAGGCCATTGCTCCTGCCCCACAGATACATTTTCGTTTTCTTTCTCTTCTTCAGAAACTTCTTCGTTTTCTTCAACTACATCTTCTTCTACTTCTTTATCTCCTTCTACTTCACTCGTTTTGTTCCGATTGGAGATGAATCTGAGGAGAAGAATTTGAATCTAAAGAAGAAGAAGGAGTGGAAAGGAGAAGAAGAAGAAGCAAGAAACGACGGATCACACGGCCCTTCTTTTTTCTTTCATTCCATTACAAGTTGCACTCAGATTTTCAACTGAAAACTTGTTTTARCTCCCTCTCTCTCTCTCTTTTGGGATTTCGTTTTGATCATTTTTGACCAATTCCTTTTCTTCAGGCATTTTCCCCCATTCCTGATCCATCTCTCTTCTTCCAGCAATTCTACAGTATTTCACTTCTACAAGAATCTCTGAGGCTGAAAAAAAAGATACAAGTTGCGTCTCCTAGATTTTTCAAAGGTTTTCATGTGCTCTCTAAGTCTGCGTCTCTCAATTCGAAACTCTATTTTTCTGATTCAATTTAAGCGCCAAATTTGAATATGACCTGAATAGAGAGTTGGAAGTGCAGGAGAGCTCTTTTCTTGAGATTTTCGATAGAATCCGTGTCTTTTTTGAATAGCGGTACTCTAATGAAATAGAGTAGTGTGTCTGGGCGGGGGAAAAATAATCCTTGAACAACAACTACTGTAGATGTTTTGAAGATCAGAGTTTTTTGAGAACGTATTCGACTGTTTGGGATATTTTTTATTGTAATAGCAAAATAATGATTTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTTCATTCCATTACAAGTT</pcr_primer_p1>
		<pcr_primer_p2>CATGAAAACCTTTGAAAAATCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTTCATTCCATTACAAGTTGCACTCAGATTTTCAACTGAAAACTTGTTTTATCTCCCTCTCTCTCTCTCTTTTGGGATTTCGTTTTGATCATTTTTGACCAATTCCTTTTCTTCAGGCATTTTCCCCCATTCCTGATCCATCTCTCTTCTTCCAGCAATTCTACAGTATTTCACTTCTACAAGAATCTCTGAGGCTGAAAAAAAAGATACAAGTTGCGTCTCCTAGATTTTTCAAAGGTTTTCATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTTCATTCCATTACAAGTTGCACTCAGATTTTCAACTGAAAACTTGTTTTARCTCCCTCTCTCTCTCTCTTTTGGGATTTCGTTTTGATCATTTTTGACCAATTCCTTTTCTTCAGGCATTTTCCCCCATTCCTGATCCATCTCTCTTCTTCCAGCAATTCTACAGTATTTCACTTCTACAAGAATCTCTGAGGCTGAAAAAAAAGATACAAGTTGCGTCTCCTAGATTTTTCAAAGGTTTTCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25947</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>23441</contig_pos>
        <strand>+</strand>
        <context>TCTGAGGCTG[C/G]AAAAAAAGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCTTCCAGCAATTCTACAGTATTTCACTTCTACAAGAATCTCTGAGGCTG</left_flank>
        <right_flank>AAAAAAAGATACAAGTTGCGTCTCCTAGATTTTTCAAAGGTTTTCATGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGTTCTCTATTAATTAATTCTTCTTCCCATAGAATATTCAACAAGTTTCAACAAGCACTTCTAGAGAGGCCATTGCTCCTGCCCCACAGATACATTTTCGTTTTCTTTCTCTTCTTCAGAAACTTCTTCGTTTTCTTCAACTACATCTTCTTCTACTTCTTTATCTCCTTCTACTTCACTCGTTTTGTTCCGATTGGAGATGAATCTGAGGAGAAGAATTTGAATCTAAAGAAGAAGAAGGAGTGGAAAGGAGAAGAAGAAGAAGCAAGAAACGACGGATCACACGGCCCTTCTTTTTTCTTTCATTCCATTACAAGTTGCACTCAGATTTTCAACTGAAAACTTGTTTTATCTCCCTCTCTCTCTCTCTTTTGGGATTTCGTTTTGATCATTTTTGACCAATTCCTTTTCTTCAGGCATTTTCCCCCATTCCTGATCCATCTCTCTTCTTCCAGCAATTCTACAGTATTTCACTTCTACAAGAATCTCTGAGGCTGAAAAAAAAGATACAAGTTGCGTCTCCTAGATTTTTCAAAGGTTTTCATGTGCTCTCTAAGTCTGCGTCTCTCAATTCGAAACTCTATTTTTCTGATTCAATTTAAGCGCCAAATTTGAATATGACCTGAATAGAGAGTTGGAAGTGCAGGAGAGCTCTTTTCTTGAGATTTTCGATAGAATCCGTGTCTTTTTTGAATAGCGGTACTCTAATGAAATAGAGTAGTGTGTCTGGGCGGGGGAAAAATAATCCTTGAACAACAACTACTGTAGATGTTTTGAAGATCAGAGTTTTTTGAGAACGTATTCGACTGTTTGGGATATTTTTTATTGTAATAGCAAAATAATGATTTCAAAAATATTACCGTAAAACCTGTAATAGAAGGCCCCCCTCACTTTCAAATTTAGGAGTATTTAAATATCTCAGTCCCTGTGATAGATATCAAAAAGTTGTCGACTGATAAATTGTTCATCATAAAAAAAATAAAAAATTTTTATCAGTA</canonical>
            <polymorphic>TCTGTTCTCTATTAATTAATTCTTCTTCCCATAGAATATTCAACAAGTTTCAACAAGCACTTCTAGAGAGGCCATTGCTCCTGCCCCACAGATACATTTTCGTTTTCTTTCTCTTCTTCAGAAACTTCTTCGTTTTCTTCAACTACATCTTCTTCTACTTCTTTATCTCCTTCTACTTCACTCGTTTTGTTCCGATTGGAGATGAATCTGAGGAGAAGAATTTGAATCTAAAGAAGAAGAAGGAGTGGAAAGGAGAAGAAGAAGAAGCAAGAAACGACGGATCACACGGCCCTTCTTTTTTCTTTCATTCCATTACAAGTTGCACTCAGATTTTCAACTGAAAACTTGTTTTATCTCCCTCTCTCTCTCTCTTTTGGGATTTCGTTTTGATCATTTTTGACCAATTCCTTTTCTTCAGGCATTTTCCCCCATTCCTGATCCATCTCTCTTCTTCCAGCAATTCTACAGTATTTCACTTCTACAAGAATCTCTGAGGCTGSAAAAAAAGATACAAGTTGCGTCTCCTAGATTTTTCAAAGGTTTTCATGTGCTCTCTAAGTCTGCGTCTCTCAATTCGAAACTCTATTTTTCTGATTCAATTTAAGCGCCAAATTTGAATATGACCTGAATAGAGAGTTGGAAGTGCAGGAGAGCTCTTTTCTTGAGATTTTCGATAGAATCCGTGTCTTTTTTGAATAGCGGTACTCTAATGAAATAGAGTAGTGTGTCTGGGCGGGGGAAAAATAATCCTTGAACAACAACTACTGTAGATGTTTTGAAGATCAGAGTTTTTTGAGAACGTATTCGACTGTTTGGGATATTTTTTATTGTAATAGCAAAATAATGATTTCAAAAATATTACCGTAAAACCTGTAATAGAAGGCCCCCCTCACTTTCAAATTTAGGAGTATTTAAATATCTCAGTCCCTGTGATAGATATCAAAAAGTTGTCGACTGATAAATTGTTCATCATAAAAAAAATAAAAAATTTTTATCAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTACAAGTTGCACTCAGATTT</pcr_primer_p1>
		<pcr_primer_p2>AGACTTAGAGAGCACATGAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CATTACAAGTTGCACTCAGATTTTCAACTGAAAACTTGTTTTATCTCCCTCTCTCTCTCTCTTTTGGGATTTCGTTTTGATCATTTTTGACCAATTCCTTTTCTTCAGGCATTTTCCCCCATTCCTGATCCATCTCTCTTCTTCCAGCAATTCTACAGTATTTCACTTCTACAAGAATCTCTGAGGCTGAAAAAAAAGATACAAGTTGCGTCTCCTAGATTTTTCAAAGGTTTTCATGTGCTCTCTAAGTCT</canonical_amplicon>
		<polymorphic_amplicon>CATTACAAGTTGCACTCAGATTTTCAACTGAAAACTTGTTTTATCTCCCTCTCTCTCTCTCTTTTGGGATTTCGTTTTGATCATTTTTGACCAATTCCTTTTCTTCAGGCATTTTCCCCCATTCCTGATCCATCTCTCTTCTTCCAGCAATTCTACAGTATTTCACTTCTACAAGAATCTCTGAGGCTGSAAAAAAAGATACAAGTTGCGTCTCCTAGATTTTTCAAAGGTTTTCATGTGCTCTCTAAGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25948</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>23702</contig_pos>
        <strand></strand>
        <context>TTGAACAACA[A/T]CTACTGTAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAAATAGAGTAGTGTGTCTGGGCGGGGGAAAAATAATCCTTGAACAACA</left_flank>
        <right_flank>CTACTGTAGATGTTTTGAAGATCAGAGTTTTTTGAGAACGTATTCGACTG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAGCAAGAAACGACGGATCACACGGCCCTTCTTTTTTCTTTCATTCCATTACAAGTTGCACTCAGATTTTCAACTGAAAACTTGTTTTATCTCCCTCTCTCTCTCTCTTTTGGGATTTCGTTTTGATCATTTTTGACCAATTCCTTTTCTTCAGGCATTTTCCCCCATTCCTGATCCATCTCTCTTCTTCCAGCAATTCTACAGTATTTCACTTCTACAAGAATCTCTGAGGCTGAAAAAAAAGATACAAGTTGCGTCTCCTAGATTTTTCAAAGGTTTTCATGTGCTCTCTAAGTCTGCGTCTCTCAATTCGAAACTCTATTTTTCTGATTCAATTTAAGCGCCAAATTTGAATATGACCTGAATAGAGAGTTGGAAGTGCAGGAGAGCTCTTTTCTTGAGATTTTCGATAGAATCCGTGTCTTTTTTGAATAGCGGTACTCTAATGAAATAGAGTAGTGTGTCTGGGCGGGGGAAAAATAATCCTTGAACAACAACTACTGTAGATGTTTTGAAGATCAGAGTTTTTTGAGAACGTATTCGACTGTTTGGGATATTTTTTATTGTAATAGCAAAATAATGATTTCAAAAATATTACCGTAAAACCTGTAATAGAAGGCCCCCCTCACTTTCAAATTTAGGAGTATTTAAATATCTCAGTCCCTGTGATAGATATCAAAAAGTTGTCGACTGATAAATTGTTCATCATAAAAAAAATAAAAAATTTTTATCAGTAGACACATGTTTGATATCTTTTATAGCAACCGAGATAATTGAGTTCAAACTTAAAAGTGTCGAGAGTCGCTTTACCATAAAACTTTTATGGTGTCTCCAAATTTTTCAATCAGGAAAAATAATAGTCGTTTCTGATTTCTAAAAACTCAGGACCAACCATGATCTTGTAATTATTTTGAAGTGTTTTTTAAAACATGCAACATCAATAATTTTTGGTACCAGATTCATAAACTGAAAATACTGTTGAAAAGCAACATTACTG</canonical>
            <polymorphic>AAGAAGCAAGAAACGACGGATCACACGGCCCTTCTTTTTTCTTTCATTCCATTACAAGTTGCACTCAGATTTTCAACTGAAAACTTGTTTTATCTCCCTCTCTCTCTCTCTTTTGGGATTTCGTTTTGATCATTTTTGACCAATTCCTTTTCTTCAGGCATTTTCCCCCATTCCTGATCCATCTCTCTTCTTCCAGCAATTCTACAGTATTTCACTTCTACAAGAATCTCTGAGGCTGAAAAAAAAGATACAAGTTGCGTCTCCTAGATTTTTCAAAGGTTTTCATGTGCTCTCTAAGTCTGCGTCTCTCAATTCGAAACTCTATTTTTCTGATTCAATTTAAGCGCCAAATTTGAATATGACCTGAATAGAGAGTTGGAAGTGCAGGAGAGCTCTTTTCTTGAGATTTTCGATAGAATCCGTGTCTTTTTTGAATAGCGGTACTCTAATGAAATAGAGTAGTGTGTCTGGGCGGGGGAAAAATAATCCTTGAACAACAWCTACTGTAGATGTTTTGAAGATCAGAGTTTTTTGAGAACGTATTCGACTGTTTGGGATATTTTTTATTGTAATAGCAAAATAATGATTTCAAAAATATTACCGTAAAACCTGTAATAGAAGGCCCCCCTCACTTTCAAATTTAGGAGTATTTAAATATCTCAGTCCCTGTGATAGATATCAAAAAGTTGTCGACTGATAAATTGTTCATCATAAAAAAAATAAAAAATTTTTATCAGTAGACACATGTTTGATATCTTTTATAGCAACCGAGATAATTGAGTTCAAACTTAAAAGTGTCGAGAGTCGCTTTACCATAAAACTTTTATGGTGTCTCCAAATTTTTCAATCAGGAAAAATAATAGTCGTTTCTGATTTCTAAAAACTCAGGACCAACCATGATCTTGTAATTATTTTGAAGTGTTTTTTAAAACATGCAACATCAATAATTTTTGGTACCAGATTCATAAACTGAAAATACTGTTGAAAAGCAACATTACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGAAACTCTATTTTTCTGATTC</pcr_primer_p1>
		<pcr_primer_p2>AATATCCCAAACAGTCGAATAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCGAAACTCTATTTTTCTGATTCAATTTAAGCGCCAAATTTGAATATGACCTGAATAGAGAGTTGGAAGTGCAGGAGAGCTCTTTTCTTGAGATTTTCGATAGAATCCGTGTCTTTTTTGAATAGCGGTACTCTAATGAAATAGAGTAGTGTGTCTGGGCGGGGGAAAAATAATCCTTGAACAACAACTACTGTAGATGTTTTGAAGATCAGAGTTTTTTGAGAACGTATTCGACTGTTTGGGATATT</canonical_amplicon>
		<polymorphic_amplicon>TCGAAACTCTATTTTTCTGATTCAATTTAAGCGCCAAATTTGAATATGACCTGAATAGAGAGTTGGAAGTGCAGGAGAGCTCTTTTCTTGAGATTTTCGATAGAATCCGTGTCTTTTTTGAATAGCGGTACTCTAATGAAATAGAGTAGTGTGTCTGGGCGGGGGAAAAATAATCCTTGAACAACAWCTACTGTAGATGTTTTGAAGATCAGAGTTTTTTGAGAACGTATTCGACTGTTTGGGATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25949</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>45990</contig_pos>
        <strand>+</strand>
        <context>CCAGAAGAAT[A/T]GAACGGAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAGTCGTTTGAAGACTCGAGATCGGAAAGCAACGAAAAACCAGAAGAAT</left_flank>
        <right_flank>GAACGGAAAGAAGAATAAAGTAGCAATAATCAACCCCTGGAATTTGATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGCGAACTACCGTAGTGATCAAATATTTTTTTGCAACTTGTATTCTCAATTTTCGTCCGTTTGCAGGCATGTTTTTTAGATTAATAAAATTTTTATTTTCGACTTGTTTGGTGGGTTTCCATACAAAATTTGTCGAAAAGCAATAGTAATCAAGAAATAATTATCGAAAACTTTCAGGCCACTCATTTTGTCTTTTTCTTCCTCAGCTCCAATTTGTTTGTACCATAATAATAACTTCAGTCATAATTGCATAACTCACATCTGTCACAACAACTGGTTTCCCATGTTGAACTGAACTTTCCGACCCGGTAGCAATGGTTGTTCCAGGTGTACTTCGAGTTGTTCCAGTGGGCACCATTGGTGATTTTTCTCCACGAGTTGTAGATGTTTCATCAATGATCGCATACCGCTTTTTCTCTCGTGGTTTTTTGTTTTTGTATCCACCCAAAAGTCGTTTGAAGACTCGAGATCGGAAAGCAACGAAAAACCAGAAGAATAGAACGGAAAGAAGAATAAAGTAGCAATAATCAACCCCTGGAATTTGATTTCGAGTTCGACTTGGAATTGATACGAGGACTCACAAATTGCTGGAAACTCATAAACTGAGTCGAATCCAAAAATGAGTGGTCTGGCTGTGGAGAACGCCTTCTGCAGAATCTTTTGACACATGTGCAGTTTTGTTAGGGAATACATCAAAATTAGTCCAGCATCAACAAGTCCGAATGCGTACTAAAACAGTGTTTTAATTGGAGGTAAATCGAAAAAAAAAACAGTTTACCCATTGTCTGATCAGCAAGTTATCTTTGTTTATGAGCAAATACCACGCATAAACCAACATGCCGGTGGCTGCAGCTGTGAGCTTGAAAAATATCAGGAATGTCGATCCAACTGTTGGTGTTTTGATGAAAACAGACACAAGATAGACGAAAGAAATGATCGGGAAGAAGAATAACAGCACGCTGCCGTAGACCCTGAGATTATGAGTTTGAGAAGATGTT</canonical>
            <polymorphic>AATGCGAACTACCGTAGTGATCAAATATTTTTTTGCAACTTGTATTCTCAATTTTCGTCCGTTTGCAGGCATGTTTTTTAGATTAATAAAATTTTTATTTTCGACTTGTTTGGTGGGTTTCCATACAAAATTTGTCGAAAAGCAATAGTAATCAAGAAATAATTATCGAAAACTTTCAGGCCACTCATTTTGTCTTTTTCTTCCTCAGCTCCAATTTGTTTGTACCATAATAATAACTTCAGTCATAATTGCATAACTCACATCTGTCACAACAACTGGTTTCCCATGTTGAACTGAACTTTCCGACCCGGTAGCAATGGTTGTTCCAGGTGTACTTCGAGTTGTTCCAGTGGGCACCATTGGTGATTTTTCTCCACGAGTTGTAGATGTTTCATCAATGATCGCATACCGCTTTTTCTCTCGTGGTTTTTTGTTTTTGTATCCACCCAAAAGTCGTTTGAAGACTCGAGATCGGAAAGCAACGAAAAACCAGAAGAATWGAACGGAAAGAAGAATAAAGTAGCAATAATCAACCCCTGGAATTTGATTTCGAGTTCGACTTGGAATTGATACGAGGACTCACAAATTGCTGGAAACTCATAAACTGAGTCGAATCCAAAAATGAGTGGTCTGGCTGTGGAGAACGCCTTCTGCAGAATCTTTTGACACATGTGCAGTTTTGTTAGGGAATACATCAAAATTAGTCCAGCATCAACAAGTCCGAATGCGTACTAAAACAGTGTTTTAATTGGAGGTAAATCGAAAAAAAAAACAGTTTACCCATTGTCTGATCAGCAAGTTATCTTTGTTTATGAGCAAATACCACGCATAAACCAACATGCCGGTGGCTGCAGCTGTGAGCTTGAAAAATATCAGGAATGTCGATCCAACTGTTGGTGTTTTGATGAAAACAGACACAAGATAGACGAAAGAAATGATCGGGAAGAAGAATAACAGCACGCTGCCGTAGACCCTGAGATTATGAGTTTGAGAAGATGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCTCCACGAGTTGTAGAT</pcr_primer_p1>
		<pcr_primer_p2>ATTCGACTCAGTTTATGAGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCTCCACGAGTTGTAGATGTTTCATCAATGATCGCATACCGCTTTTTCTCTCGTGGTTTTTTGTTTTTGTATCCACCCAAAAGTCGTTTGAAGACTCGAGATCGGAAAGCAACGAAAAACCAGAAGAATAGAACGGAAAGAAGAATAAAGTAGCAATAATCAACCCCTGGAATTTGATTTCGAGTTCGACTTGGAATTGATACGAGGACTCACAAATTGCTGGAAACTCATAAACTGAGTCGAAT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCTCCACGAGTTGTAGATGTTTCATCAATGATCGCATACCGCTTTTTCTCTCGTGGTTTTTTGTTTTTGTATCCACCCAAAAGTCGTTTGAAGACTCGAGATCGGAAAGCAACGAAAAACCAGAAGAATWGAACGGAAAGAAGAATAAAGTAGCAATAATCAACCCCTGGAATTTGATTTCGAGTTCGACTTGGAATTGATACGAGGACTCACAAATTGCTGGAAACTCATAAACTGAGTCGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25950</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>48174</contig_pos>
        <strand>+</strand>
        <context>TGGAGAGAGC[G/T]TAAAATTGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGAAAAGAATGGCTGGAATCAAAACCAACGACAGGAAAATGGAGAGAGC</left_flank>
        <right_flank>TAAAATTGCACAGAAGTAATAAAAGAAAGTGCGATTGACTGAAATTTAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGGTCAGTTGAACATGGTGGCCTAGTTTAGTTTTCTAGTTTAGTTTTCCAGGCCACCATGGTAAATGACCTAGAATGGCGTCATATTCTTCAGGTATGTTTTTAAGGTTATTTTAACAAGTTTCCTAGGGCAACATCTTTCATAGTTCGAAAAATGTCTAGGTCATTTTAAAATAGTGGCCTAGTTTTTGAAAGTTAAGTTTTCTAGGCCTCCAACTTTTATGGCAAACTTACAAATGATAATAGTCCTCGAAAGTACCATAAACATGGAATAGAATATAGGCATAAACCGCAACAATAAAATAGAGACAGAAATCCCAAAAGACGCTTCCGATCCAGAAAATGGGTGGAGAAATTCCAGTGAGCATTTGCTAAAAAACAATTTGATACAACTAAAACGTAGTAATTCATTTACCTGATGTTGGAATCGAGTTGTTCTCTCCTCAATCAAGAAAAGAATGGCTGGAATCAAAACCAACGACAGGAAAATGGAGAGAGCTTAAAATTGCACAGAAGTAATAAAAGAAAGTGCGATTGACTGAAATTTAGATTATCGAAACACTGCTAAAATATTTAATTACCATCTCAGCATGTTTTACTGGCACGAACTCTACGTACAACTCATTCGTTCCAACAGGACTTGACGAATTGAGTCGAAGATATTTAAGGTTCGAGAGCAAGTTCAGCGCAATCGGAAGACAAGATGACGTTTGTTCGTAATAGTGTAATATGGTCTTATGCTCATAAACTGAGATGACAAGTCCTATTTTCTTATCACTGACAGTCTGATTCTTGACAAGGGCTGGAATTTTCTTTTTCATCGGGACTTCAGAAACCTGAAAACAACATTTTTAAGTTCATACTTTTTGATTCTTGAGTTGTCTACCTCTAGATTTTTGAAATGCTTCAAATAATTAAATATCCTCTGATCCGAATTTTTCTCAAATTGAAGAATCACTTTGGACGGGGGGAAGCCAGATAAATTGAAGTTGTGTATGAG</canonical>
            <polymorphic>TAGGTCAGTTGAACATGGTGGCCTAGTTTAGTTTTCTAGTTTAGTTTTCCAGGCCACCATGGTAAATGACCTAGAATGGCGTCATATTCTTCAGGTATGTTTTTAAGGTTATTTTAACAAGTTTCCTAGGGCAACATCTTTCATAGTTCGAAAAATGTCTAGGTCATTTTAAAATAGTGGCCTAGTTTTTGAAAGTTAAGTTTTCTAGGCCTCCAACTTTTATGGCAAACTTACAAATGATAATAGTCCTCGAAAGTACCATAAACATGGAATAGAATATAGGCATAAACCGCAACAATAAAATAGAGACAGAAATCCCAAAAGACGCTTCCGATCCAGAAAATGGGTGGAGAAATTCCAGTGAGCATTTGCTAAAAAACAATTTGATACAACTAAAACGTAGTAATTCATTTACCTGATGTTGGAATCGAGTTGTTCTCTCCTCAATCAAGAAAAGAATGGCTGGAATCAAAACCAACGACAGGAAAATGGAGAGAGCKTAAAATTGCACAGAAGTAATAAAAGAAAGTGCGATTGACTGAAATTTAGATTATCGAAACACTGCTAAAATATTTAATTACCATCTCAGCATGTTTTACTGGCACGAACTCTACGTACAACTCATTCGTTCCAACAGGACTTGACGAATTGAGTCGAAGATATTTAAGGTTCGAGAGCAAGTTCAGCGCAATCGGAAGACAAGATGACGTTTGTTCGTAATAGTGTAATATGGTCTTATGCTCATAAACTGAGATGACAAGTCCTATTTTCTTATCACTGACAGTCTGATTCTTGACAAGGGCTGGAATTTTCTTTTTCATCGGGACTTCAGAAACCTGAAAACAACATTTTTAAGTTCATACTTTTTGATTCTTGAGTTGTCTACCTCTAGATTTTTGAAATGCTTCAAATAATTAAATATCCTCTGATCCGAATTTTTCTCAAATTGAAGAATCACTTTGGACGGGGGGAAGCCAGATAAATTGAAGTTGTGTATGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>304 253 172 127 36 32 29 26 21</canonical_bands>
                <polymorphic_bands>340 253 172 127 32 29 26 21</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>304 188 103 90 85 74 63 55 27 11</canonical_bands>
                <polymorphic_bands>378 188 103 90 85 63 55 27 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTGTTCTCTCCTCAATCAAG</pcr_primer_p1>
		<pcr_primer_p2>GCTCTCGAACCTTAAATATCTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGTTGTTCTCTCCTCAATCAAGAAAAGAATGGCTGGAATCAAAACCAACGACAGGAAAATGGAGAGAGCTTAAAATTGCACAGAAGTAATAAAAGAAAGTGCGATTGACTGAAATTTAGATTATCGAAACACTGCTAAAATATTTAATTACCATCTCAGCATGTTTTACTGGCACGAACTCTACGTACAACTCATTCGTTCCAACAGGACTTGACGAATTGAGTCGAAGATATTTAAGGTTCGAGAGC</canonical_amplicon>
		<polymorphic_amplicon>AGTTGTTCTCTCCTCAATCAAGAAAAGAATGGCTGGAATCAAAACCAACGACAGGAAAATGGAGAGAGCKTAAAATTGCACAGAAGTAATAAAAGAAAGTGCGATTGACTGAAATTTAGATTATCGAAACACTGCTAAAATATTTAATTACCATCTCAGCATGTTTTACTGGCACGAACTCTACGTACAACTCATTCGTTCCAACAGGACTTGACGAATTGAGTCGAAGATATTTAAGGTTCGAGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25951</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>48460</contig_pos>
        <strand>+</strand>
        <context>CACTGACAGT[C/T]TGATTCTTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATGCTCATAAACTGAGATGACAAGTCCTATTTTCTTATCACTGACAGT</left_flank>
        <right_flank>TGATTCTTGACAAGGGCTGGAATTTTCTTTTTCATCGGGACTTCAGAAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACCGCAACAATAAAATAGAGACAGAAATCCCAAAAGACGCTTCCGATCCAGAAAATGGGTGGAGAAATTCCAGTGAGCATTTGCTAAAAAACAATTTGATACAACTAAAACGTAGTAATTCATTTACCTGATGTTGGAATCGAGTTGTTCTCTCCTCAATCAAGAAAAGAATGGCTGGAATCAAAACCAACGACAGGAAAATGGAGAGAGCTTAAAATTGCACAGAAGTAATAAAAGAAAGTGCGATTGACTGAAATTTAGATTATCGAAACACTGCTAAAATATTTAATTACCATCTCAGCATGTTTTACTGGCACGAACTCTACGTACAACTCATTCGTTCCAACAGGACTTGACGAATTGAGTCGAAGATATTTAAGGTTCGAGAGCAAGTTCAGCGCAATCGGAAGACAAGATGACGTTTGTTCGTAATAGTGTAATATGGTCTTATGCTCATAAACTGAGATGACAAGTCCTATTTTCTTATCACTGACAGTCTGATTCTTGACAAGGGCTGGAATTTTCTTTTTCATCGGGACTTCAGAAACCTGAAAACAACATTTTTAAGTTCATACTTTTTGATTCTTGAGTTGTCTACCTCTAGATTTTTGAAATGCTTCAAATAATTAAATATCCTCTGATCCGAATTTTTCTCAAATTGAAGAATCACTTTGGACGGGGGGAAGCCAGATAAATTGAAGTTGTGTATGAGGGCAGTCGGGTCAGCAGGCACACTAATTGCACTCTTTTTAAAAACCAAATACAAGAAAATCGTTAGAATAAAGAACTGCATGATAAGTTGGCTGGGATTTTTGAGAAGATGAACGAAGCGTTTGTAGAGAATCGTTTTGAGTTGACAGGAAATCAATGATTGGCCTTCGAGTGGTGGTTCTGACAATTTCTAAGATAGATGACTTTTAACGACATACTCGGGTTCAAACCTTTCTTGGCTTCCGCCAAAGCATTGAAGTTTTTCTCAGCTCTCGCCCTTCTTTCAT</canonical>
            <polymorphic>AAACCGCAACAATAAAATAGAGACAGAAATCCCAAAAGACGCTTCCGATCCAGAAAATGGGTGGAGAAATTCCAGTGAGCATTTGCTAAAAAACAATTTGATACAACTAAAACGTAGTAATTCATTTACCTGATGTTGGAATCGAGTTGTTCTCTCCTCAATCAAGAAAAGAATGGCTGGAATCAAAACCAACGACAGGAAAATGGAGAGAGCTTAAAATTGCACAGAAGTAATAAAAGAAAGTGCGATTGACTGAAATTTAGATTATCGAAACACTGCTAAAATATTTAATTACCATCTCAGCATGTTTTACTGGCACGAACTCTACGTACAACTCATTCGTTCCAACAGGACTTGACGAATTGAGTCGAAGATATTTAAGGTTCGAGAGCAAGTTCAGCGCAATCGGAAGACAAGATGACGTTTGTTCGTAATAGTGTAATATGGTCTTATGCTCATAAACTGAGATGACAAGTCCTATTTTCTTATCACTGACAGTYTGATTCTTGACAAGGGCTGGAATTTTCTTTTTCATCGGGACTTCAGAAACCTGAAAACAACATTTTTAAGTTCATACTTTTTGATTCTTGAGTTGTCTACCTCTAGATTTTTGAAATGCTTCAAATAATTAAATATCCTCTGATCCGAATTTTTCTCAAATTGAAGAATCACTTTGGACGGGGGGAAGCCAGATAAATTGAAGTTGTGTATGAGGGCAGTCGGGTCAGCAGGCACACTAATTGCACTCTTTTTAAAAACCAAATACAAGAAAATCGTTAGAATAAAGAACTGCATGATAAGTTGGCTGGGATTTTTGAGAAGATGAACGAAGCGTTTGTAGAGAATCGTTTTGAGTTGACAGGAAATCAATGATTGGCCTTCGAGTGGTGGTTCTGACAATTTCTAAGATAGATGACTTTTAACGACATACTCGGGTTCAAACCTTTCTTGGCTTCCGCCAAAGCATTGAAGTTTTTCTCAGCTCTCGCCCTTCTTTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>362 249 105 96 93 46 44 5</canonical_bands>
                <polymorphic_bands>362 249 137 105 96 46 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAACTCTACGTACAACTCATTC</pcr_primer_p1>
		<pcr_primer_p2>TAAAAATGTTGTTTTCAGGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGAACTCTACGTACAACTCATTCGTTCCAACAGGACTTGACGAATTGAGTCGAAGATATTTAAGGTTCGAGAGCAAGTTCAGCGCAATCGGAAGACAAGATGACGTTTGTTCGTAATAGTGTAATATGGTCTTATGCTCATAAACTGAGATGACAAGTCCTATTTTCTTATCACTGACAGTCTGATTCTTGACAAGGGCTGGAATTTTCTTTTTCATCGGGACTTCAGAAACCTGAAAACAACATTTTTA</canonical_amplicon>
		<polymorphic_amplicon>CGAACTCTACGTACAACTCATTCGTTCCAACAGGACTTGACGAATTGAGTCGAAGATATTTAAGGTTCGAGAGCAAGTTCAGCGCAATCGGAAGACAAGATGACGTTTGTTCGTAATAGTGTAATATGGTCTTATGCTCATAAACTGAGATGACAAGTCCTATTTTCTTATCACTGACAGTYTGATTCTTGACAAGGGCTGGAATTTTCTTTTTCATCGGGACTTCAGAAACCTGAAAACAACATTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25952</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>81464</contig_pos>
        <strand></strand>
        <context>tcggtgagaa[A/C]attccagaag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCGAAAAAATTGCTAATTTTTCGGAGTTTTCAGTAGTTCTCGGTGAGAA</left_flank>
        <right_flank>ATTCCAGAAGTTTCCAGAAATGGACGAGAAGCGATTTTTCAGGATTTGCC</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCTGAATTTTAGAATTTGGAAATTTTGAAATTCCCAATATTTTTAGAATTTTCATAATTTTAGAATTCACATAAATTCGAATGTTTAAAGTTCATAAATTTTGGGAATGTCAGAATTTTATGTGCTATTATTCCCATTTTAAAGCGAATTTTCGAGAGAAAAAAATTGATTTTTTCTCAGATTTTTTTTTCAAAAAATTTTGACCTTTTTAGGTTTTTCAACTATTTTTGATTTTTCCAAATTTTTTGTTGGAAATTTGACAGGATGGTTCGCGAAGATTACTGTAAAAAACCTTTCTACAGTAATCTACAATAATCTTCGCGAACGCCATCCTGTCAAATTTCAGACAAAAAACCGGAAAAATCGAAAAAGAATCTTTGAAAATAGCTGGAAAACCTGAAAATGTTTAAAAATTTCGCGAAAATCTGATGAAAAGTACTTTTTTTTTCGAAAAAATTGCTAATTTTTCGGAGTTTTCAGTAGTTCTCGGTGAGAAAATTCCAGAAGTTTCCAGAAATGGACGAGAAGCGATTTTTCAGGATTTGCCTTTTTTTTTTTGATTTTTTTGTTTCGATATGAATCTACATTTTTATATTTTCAGGGCCTGAAATTGAGCAATATCAAGTCTAATGACAAGATGACCATTTAGAACAAATTTTCAATCTAGTAAAATAGAAACTCACCCCATTTTCATCTAAAACATTGAACTGAAACATAATAGCTCAAGTGAAGAAATCAACCATCGTTTGTTTTAAGCCCACACTCTCGCTTCCGTCATCTGATAACACTTACATATGTTTCTTACTCGTCCATGTTTTTTGTCGATTTTTATTATTCATTACCCTCCTCTTAATGATTGTTTTGCCCCACTATCAGAAAACAATTTGCTCCCACACAAAAACCCACCTTCTCAATTTTTGACAATATATTTGTTCCGATGCCCATACTGTGCGAGTCGTCGTCGATCGGTAGCTTGCGAACGGTTTTGTAGACACCG</canonical>
            <polymorphic>ATTTCTGAATTTTAGAATTTGGAAATTTTGAAATTCCCAATATTTTTAGAATTTTCATAATTTTAGAATTCACATAAATTCGAATGTTTAAAGTTCATAAATTTTGGGAATGTCAGAATTTTATGTGCTATTATTCCCATTTTAAAGCGAATTTTCGAGAGAAAAAAATTGATTTTTTCTCAGATTTTTTTTTCAAAAAATTTTGACCTTTTTAGGTTTTTCAACTATTTTTGATTTTTCCAAATTTTTTGTTGGAAATTTGACAGGATGGTTCGCGAAGATTACTGTAAAAAACCTTTCTACAGTAATCTACAATAATCTTCGCGAACGCCATCCTGTCAAATTTCAGACAAAAAACCGGAAAAATCGAAAAAGAATCTTTGAAAATAGCTGGAAAACCTGAAAATGTTTAAAAATTTCGCGAAAATCTGATGAAAAGTACTTTTTTTTTCGAAAAAATTGCTAATTTTTCGGAGTTTTCAGTAGTTCTCGGTGAGAAMATTCCAGAAGTTTCCAGAAATGGACGAGAAGCGATTTTTCAGGATTTGCCTTTTTTTTTTTGATTTTTTTGTTTCGATATGAATCTACATTTTTATATTTTCAGGGCCTGAAATTGAGCAATATCAAGTCTAATGACAAGATGACCATTTAGAACAAATTTTCAATCTAGTAAAATAGAAACTCACCCCATTTTCATCTAAAACATTGAACTGAAACATAATAGCTCAAGTGAAGAAATCAACCATCGTTTGTTTTAAGCCCACACTCTCGCTTCCGTCATCTGATAACACTTACATATGTTTCTTACTCGTCCATGTTTTTTGTCGATTTTTATTATTCATTACCCTCCTCTTAATGATTGTTTTGCCCCACTATCAGAAAACAATTTGCTCCCACACAAAAACCCACCTTCTCAATTTTTGACAATATATTTGTTCCGATGCCCATACTGTGCGAGTCGTCGTCGATCGGTAGCTTGCGAACGGTTTTGTAGACACCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>344 157 85 85 73 49 44 33 23 18 17 17 14 10 8 8 8 7</canonical_bands>
                <polymorphic_bands>344 242 85 73 49 44 33 23 18 17 17 14 10 8 8 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>228 112 85 85 73 45 44 43 35 33 32 31 23 18 17 17 14 10 9 8 8 8 8 7 7</canonical_bands>
                <polymorphic_bands>228 147 85 85 73 45 44 43 33 32 31 23 18 17 17 14 10 9 8 8 8 8 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATGTGCTATTATTCCCATTTT</pcr_primer_p1>
		<pcr_primer_p2>GGTCATCTTGTCATTAGACTTGA</pcr_primer_p2>
		<pcr_amplicon_size>526</pcr_amplicon_size>
		<canonical_amplicon>TTATGTGCTATTATTCCCATTTTAAAGCGAATTTTCGAGAGAAAAAAATTGATTTTTTCTCAGATTTTTTTTTCAAAAAATTTTGACCTTTTTAGGTTTTTCAACTATTTTTGATTTTTCCAAATTTTTTGTTGGAAATTTGACAGGATGGTTCGCGAAGATTACTGTAAAAAACCTTTCTACAGTAATCTACAATAATCTTCGCGAACGCCATCCTGTCAAATTTCAGACAAAAAACCGGAAAAATCGAAAAAGAATCTTTGAAAATAGCTGGAAAACCTGAAAATGTTTAAAAATTTCGCGAAAATCTGATGAAAAGTACTTTTTTTTTCGAAAAAATTGCTAATTTTTCGGAGTTTTCAGTAGTTCTCGGTGAGAAAATTCCAGAAGTTTCCAGAAATGGACGAGAAGCGATTTTTCAGGATTTGCCTTTTTTTTTTTGATTTTTTTGTTTCGATATGAATCTACATTTTTATATTTTCAGGGCCTGAAATTGAGCAATATCAAGTCTAATGACAAGATGACC</canonical_amplicon>
		<polymorphic_amplicon>TTATGTGCTATTATTCCCATTTTAAAGCGAATTTTCGAGAGAAAAAAATTGATTTTTTCTCAGATTTTTTTTTCAAAAAATTTTGACCTTTTTAGGTTTTTCAACTATTTTTGATTTTTCCAAATTTTTTGTTGGAAATTTGACAGGATGGTTCGCGAAGATTACTGTAAAAAACCTTTCTACAGTAATCTACAATAATCTTCGCGAACGCCATCCTGTCAAATTTCAGACAAAAAACCGGAAAAATCGAAAAAGAATCTTTGAAAATAGCTGGAAAACCTGAAAATGTTTAAAAATTTCGCGAAAATCTGATGAAAAGTACTTTTTTTTTCGAAAAAATTGCTAATTTTTCGGAGTTTTCAGTAGTTCTCGGTGAGAAMATTCCAGAAGTTTCCAGAAATGGACGAGAAGCGATTTTTCAGGATTTGCCTTTTTTTTTTTGATTTTTTTGTTTCGATATGAATCTACATTTTTATATTTTCAGGGCCTGAAATTGAGCAATATCAAGTCTAATGACAAGATGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25953</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>84814</contig_pos>
        <strand>+</strand>
        <context>ATTWTAGTAA[A/G]TCATCTGACT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAACAGTTCCAGCAGAAGTGTGACCTGAATAACTGAAAGATTTTAGTAA</left_flank>
        <right_flank>TCATCTGACTGAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTTAAAAATTTGTGAAAATTCTCGACTTCTATCAGCCATTGAATAAAAAGAAAAACACATTGGATAAGAAGAACTTGAAAAATTGGGCTTTTCATTCAGAAATCTATCACTCAAAATATTGGCTTCAGAAAATTGGGTCGACTCGGTCATTCTTCGCCACGCAGAGAAAATGTTCTCATCAGTTCAGTTCCGTCTCTACCGTATGCTTCAGTCTCCCGGGTCGCTGCACAATTCTGGGTGCACTTTGCATACATCCTGAATTTTTGTTTCACAGTAATAATCACTAAATTTTTAAAATTTCCATTGCAGATGAATTTGTTTTCATAAACAAAGAGAACGAAAGTTGAAACAGAGGAAATTAAAGAAAAATTATAGACTGCGAGCTGCAACTGGTTGAGAATTGTTCAACGGATCGTCGTTGTAATTATCATCAAATACGGCTAACAGCTAACAGTTCCAGCAGAAGTGTGACCTGAATAACTGAAAGATTTTAGTAAGTCATCTGACTGAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTTTTATTTATAAATAGAATCCTTTGGGATTACGGTATACCAAGCGGAAACGAGAGATTTTTATAGATCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAATAAAATTATAAAAGTTCATGTGATGAATTCATTTTTGTCGTCAAGCCAAACAATCTCCGAAATTGGAATGTTTCAATCAAACTGTAATCTCCTTTTCTAAAGATGACGTTTTCTGTTGCATGTAGTCAGATTTATTGAACAGCTCTTTAGAATACAAGTCACATCTCCCACATTTTTCCATGAACAACTCCTGAATAGTAGAACTCATTTTTAAACTGTAGCCAAGTTTTTTTTCAATTATCTCGATTCCTATGAAAGATATCAAAAATGTTGCAACTGATAAAATATTGTTGATA</canonical>
            <polymorphic>TAGTTAAAAATTTGTGAAAATTCTCGACTTCTATCAGCCATTGAATAAAAAGAAAAACACATTGGATAAGAAGAACTTGAAAAATTGGGCTTTTCATTCAGAAATCTATCACTCAAAATATTGGCTTCAGAAAATTGGGTCGACTCGGTCATTCTTCGCCACGCAGAGAAAATGTTCTCATCAGTTCAGTTCCGTCTCTACCGTATGCTTCAGTCTCCCGGGTCGCTGCACAATTCTGGGTGCACTTTGCATACATCCTGAATTTTTGTTTCACAGTAATAATCACTAAATTTTTAAAATTTCCATTGCAGATGAATTTGTTTTCATAAACAAAGAGAACGAAAGTTGAAACAGAGGAAATTAAAGAAAAATTATAGACTGCGAGCTGCAACTGGTTGAGAATTGTTCAACGGATCGTCGTTGTAATTATCATCAAATACGGCTAACAGCTAACAGTTCCAGCAGAAGTGTGACCTGAATAACTGAAAGATTTTAGTAARTCATCTGACTGAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTTTTATTTATAAATAGAATCCTTTGGGATTACGGTATACCAAGCGGAAACGAGAGATTTTTATAGATCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAATAAAATTATAAAAGTTCATGTGATGAATTCATTTTTGTCGTCAAGCCAAACAATCTCCGAAATTGGAATGTTTCAATCAAACTGTAATCTCCTTTTCTAAAGATGACGTTTTCTGTTGCATGTAGTCAGATTTATTGAACAGCTCTTTAGAATACAAGTCACATCTCCCACATTTTTCCATGAACAACTCCTGAATAGTAGAACTCATTTTTAAACTGTAGCCAAGTTTTTTTTCAATTATCTCGATTCCTATGAAAGATATCAAAAATGTTGCAACTGATAAAATATTGTTGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCATAAACAAAGAGAACGAAAG</pcr_primer_p1>
		<pcr_primer_p2>AATAAAAATGAAGCAGACAAATG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTCATAAACAAAGAGAACGAAAGTTGAAACAGAGGAAATTAAAGAAAAATTATAGACTGCGAGCTGCAACTGGTTGAGAATTGTTCAACGGATCGTCGTTGTAATTATCATCAAATACGGCTAACAGCTAACAGTTCCAGCAGAAGTGTGACCTGAATAACTGAAAGATTTTAGTAAGTCATCTGACTGAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTTTTATT</canonical_amplicon>
		<polymorphic_amplicon>TTCATAAACAAAGAGAACGAAAGTTGAAACAGAGGAAATTAAAGAAAAATTATAGACTGCGAGCTGCAACTGGTTGAGAATTGTTCAACGGATCGTCGTTGTAATTATCATCAAATACGGCTAACAGCTAACAGTTCCAGCAGAAGTGTGACCTGAATAACTGAAAGATTTTAGTAARTCATCTGACTGAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTTTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25954</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>85095</contig_pos>
        <strand>+</strand>
        <context>AATGTTTCAR[A/G]CAAACTGTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCATTTTTGTCGTCAAGCCAAACAATCTCCGAAATTGGAATGTTTCAA</left_flank>
        <right_flank>CAAACTGTAATCTCCTTTTCTAAAGATGACGTTTTCTGTTGCATGTAGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCACTAAATTTTTAAAATTTCCATTGCAGATGAATTTGTTTTCATAAACAAAGAGAACGAAAGTTGAAACAGAGGAAATTAAAGAAAAATTATAGACTGCGAGCTGCAACTGGTTGAGAATTGTTCAACGGATCGTCGTTGTAATTATCATCAAATACGGCTAACAGCTAACAGTTCCAGCAGAAGTGTGACCTGAATAACTGAAAGATTTTAGTAAGTCATCTGACTGAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTTTTATTTATAAATAGAATCCTTTGGGATTACGGTATACCAAGCGGAAACGAGAGATTTTTATAGATCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAATAAAATTATAAAAGTTCATGTGATGAATTCATTTTTGTCGTCAAGCCAAACAATCTCCGAAATTGGAATGTTTCAATCAAACTGTAATCTCCTTTTCTAAAGATGACGTTTTCTGTTGCATGTAGTCAGATTTATTGAACAGCTCTTTAGAATACAAGTCACATCTCCCACATTTTTCCATGAACAACTCCTGAATAGTAGAACTCATTTTTAAACTGTAGCCAAGTTTTTTTTCAATTATCTCGATTCCTATGAAAGATATCAAAAATGTTGCAACTGATAAAATATTGTTGATATTATGATGAACAATTTCTCAGTTGACAAGTTTTTTATATCTTTCCCAAGAATCGAGATAATTGAGTTGAAAGTTGACGGTTTGGGTGAGCTTCTATAATACCAAATGGGCTAAATTTCGTTGTTACACTGTCACAAAGCTTACACAAAGTCTCCACTTTAAGGCCAATTATCTTGATTCCTATGAAAGATATCAAAAATGTTTCAACTGATAAATTGTTTATCATAATGTCAACAATATTTTACTAGTTTATAAACTTTTGATATCTTTCACAGGAATAGA</canonical>
            <polymorphic>ATCACTAAATTTTTAAAATTTCCATTGCAGATGAATTTGTTTTCATAAACAAAGAGAACGAAAGTTGAAACAGAGGAAATTAAAGAAAAATTATAGACTGCGAGCTGCAACTGGTTGAGAATTGTTCAACGGATCGTCGTTGTAATTATCATCAAATACGGCTAACAGCTAACAGTTCCAGCAGAAGTGTGACCTGAATAACTGAAAGATTTTAGTAAGTCATCTGACTGAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTTTTATTTATAAATAGAATCCTTTGGGATTACGGTATACCAAGCGGAAACGAGAGATTTTTATAGATCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAATAAAATTATAAAAGTTCATGTGATGAATTCATTTTTGTCGTCAAGCCAAACAATCTCCGAAATTGGAATGTTTCAARCAAACTGTAATCTCCTTTTCTAAAGATGACGTTTTCTGTTGCATGTAGTCAGATTTATTGAACAGCTCTTTAGAATACAAGTCACATCTCCCACATTTTTCCATGAACAACTCCTGAATAGTAGAACTCATTTTTAAACTGTAGCCAAGTTTTTTTTCAATTATCTCGATTCCTATGAAAGATATCAAAAATGTTGCAACTGATAAAATATTGTTGATATTATGATGAACAATTTCTCAGTTGACAAGTTTTTTATATCTTTCCCAAGAATCGAGATAATTGAGTTGAAAGTTGACGGTTTGGGTGAGCTTCTATAATACCAAATGGGCTAAATTTCGTTGTTACACTGTCACAAAGCTTACACAAAGTCTCCACTTTAAGGCCAATTATCTTGATTCCTATGAAAGATATCAAAAATGTTTCAACTGATAAATTGTTTATCATAATGTCAACAATATTTTACTAGTTTATAAACTTTTGATATCTTTCACAGGAATAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAACTCTTACTAGGGACAAGAA</pcr_primer_p1>
		<pcr_primer_p2>GGGAGATGTGACTTGTATTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAATAAAATTATAAAAGTTCATGTGATGAATTCATTTTTGTCGTCAAGCCAAACAATCTCCGAAATTGGAATGTTTCAATCAAACTGTAATCTCCTTTTCTAAAGATGACGTTTTCTGTTGCATGTAGTCAGATTTATTGAACAGCTCTTTAGAATACAAGTCACATCTCCC</canonical_amplicon>
		<polymorphic_amplicon>TCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAATAAAATTATAAAAGTTCATGTGATGAATTCATTTTTGTCGTCAAGCCAAACAATCTCCGAAATTGGAATGTTTCAARCAAACTGTAATCTCCTTTTCTAAAGATGACGTTTTCTGTTGCATGTAGTCAGATTTATTGAACAGCTCTTTAGAATACAAGTCACATCTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25955</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>85281</contig_pos>
        <strand></strand>
        <context>tgaaagatat[C/A]waaaatgttg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AAACTGTAGCCAAGTTTTTTTTCAATTATCTCGATTCCTATGAAAGATAT</left_flank>
        <right_flank>AAAAATGTTGCAACTGATAAAATATTGTTGATATTATGATGAACAATTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGTGACCTGAATAACTGAAAGATTTTAGTAAGTCATCTGACTGAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTTTTATTTATAAATAGAATCCTTTGGGATTACGGTATACCAAGCGGAAACGAGAGATTTTTATAGATCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAATAAAATTATAAAAGTTCATGTGATGAATTCATTTTTGTCGTCAAGCCAAACAATCTCCGAAATTGGAATGTTTCAATCAAACTGTAATCTCCTTTTCTAAAGATGACGTTTTCTGTTGCATGTAGTCAGATTTATTGAACAGCTCTTTAGAATACAAGTCACATCTCCCACATTTTTCCATGAACAACTCCTGAATAGTAGAACTCATTTTTAAACTGTAGCCAAGTTTTTTTTCAATTATCTCGATTCCTATGAAAGATATCAAAAATGTTGCAACTGATAAAATATTGTTGATATTATGATGAACAATTTCTCAGTTGACAAGTTTTTTATATCTTTCCCAAGAATCGAGATAATTGAGTTGAAAGTTGACGGTTTGGGTGAGCTTCTATAATACCAAATGGGCTAAATTTCGTTGTTACACTGTCACAAAGCTTACACAAAGTCTCCACTTTAAGGCCAATTATCTTGATTCCTATGAAAGATATCAAAAATGTTTCAACTGATAAATTGTTTATCATAATGTCAACAATATTTTACTAGTTTATAAACTTTTGATATCTTTCACAGGAATAGAGATGAATAGGCTCAAAGTGGATGATTCGGTTGGCTTCTATAGAAATATGGTAAGCTTCAAATCCATTCTCCCTAGTACCCCGGGGCACATCCGATCATTGGCAGACTCCAAAATATCAATGATTCATCCTTTCTGCACATTTTTGTGACCCGATTGTTTATCCAGCACATATGGGACACAAGTTAC</canonical>
            <polymorphic>GTGTGACCTGAATAACTGAAAGATTTTAGTAAGTCATCTGACTGAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTTTTATTTATAAATAGAATCCTTTGGGATTACGGTATACCAAGCGGAAACGAGAGATTTTTATAGATCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAATAAAATTATAAAAGTTCATGTGATGAATTCATTTTTGTCGTCAAGCCAAACAATCTCCGAAATTGGAATGTTTCAATCAAACTGTAATCTCCTTTTCTAAAGATGACGTTTTCTGTTGCATGTAGTCAGATTTATTGAACAGCTCTTTAGAATACAAGTCACATCTCCCACATTTTTCCATGAACAACTCCTGAATAGTAGAACTCATTTTTAAACTGTAGCCAAGTTTTTTTTCAATTATCTCGATTCCTATGAAAGATATMAAAAATGTTGCAACTGATAAAATATTGTTGATATTATGATGAACAATTTCTCAGTTGACAAGTTTTTTATATCTTTCCCAAGAATCGAGATAATTGAGTTGAAAGTTGACGGTTTGGGTGAGCTTCTATAATACCAAATGGGCTAAATTTCGTTGTTACACTGTCACAAAGCTTACACAAAGTCTCCACTTTAAGGCCAATTATCTTGATTCCTATGAAAGATATCAAAAATGTTTCAACTGATAAATTGTTTATCATAATGTCAACAATATTTTACTAGTTTATAAACTTTTGATATCTTTCACAGGAATAGAGATGAATAGGCTCAAAGTGGATGATTCGGTTGGCTTCTATAGAAATATGGTAAGCTTCAAATCCATTCTCCCTAGTACCCCGGGGCACATCCGATCATTGGCAGACTCCAAAATATCAATGATTCATCCTTTCTGCACATTTTTGTGACCCGATTGTTTATCCAGCACATATGGGACACAAGTTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>497 226 204 73</canonical_bands>
                <polymorphic_bands>723 204 73</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATGAACAACTCCTGAATAGTA</pcr_primer_p1>
		<pcr_primer_p2>GAAATTTAGCCCATTTGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CCATGAACAACTCCTGAATAGTAGAACTCATTTTTAAACTGTAGCCAAGTTTTTTTTCAATTATCTCGATTCCTATGAAAGATATCAAAAATGTTGCAACTGATAAAATATTGTTGATATTATGATGAACAATTTCTCAGTTGACAAGTTTTTTATATCTTTCCCAAGAATCGAGATAATTGAGTTGAAAGTTGACGGTTTGGGTGAGCTTCTATAATACCAAATGGGCTAAATTTC</canonical_amplicon>
		<polymorphic_amplicon>CCATGAACAACTCCTGAATAGTAGAACTCATTTTTAAACTGTAGCCAAGTTTTTTTTCAATTATCTCGATTCCTATGAAAGATATMAAAAATGTTGCAACTGATAAAATATTGTTGATATTATGATGAACAATTTCTCAGTTGACAAGTTTTTTATATCTTTCCCAAGAATCGAGATAATTGAGTTGAAAGTTGACGGTTTGGGTGAGCTTCTATAATACCAAATGGGCTAAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25956</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>85282</contig_pos>
        <strand></strand>
        <context>gaaagatatm[A/T]aaaatgttgc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACTGTAGCCAAGTTTTTTTTCAATTATCTCGATTCCTATGAAAGATATC</left_flank>
        <right_flank>AAAATGTTGCAACTGATAAAATATTGTTGATATTATGATGAACAATTTCT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGACCTGAATAACTGAAAGATTTTAGTAAGTCATCTGACTGAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTTTTATTTATAAATAGAATCCTTTGGGATTACGGTATACCAAGCGGAAACGAGAGATTTTTATAGATCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAATAAAATTATAAAAGTTCATGTGATGAATTCATTTTTGTCGTCAAGCCAAACAATCTCCGAAATTGGAATGTTTCAATCAAACTGTAATCTCCTTTTCTAAAGATGACGTTTTCTGTTGCATGTAGTCAGATTTATTGAACAGCTCTTTAGAATACAAGTCACATCTCCCACATTTTTCCATGAACAACTCCTGAATAGTAGAACTCATTTTTAAACTGTAGCCAAGTTTTTTTTCAATTATCTCGATTCCTATGAAAGATATCAAAAATGTTGCAACTGATAAAATATTGTTGATATTATGATGAACAATTTCTCAGTTGACAAGTTTTTTATATCTTTCCCAAGAATCGAGATAATTGAGTTGAAAGTTGACGGTTTGGGTGAGCTTCTATAATACCAAATGGGCTAAATTTCGTTGTTACACTGTCACAAAGCTTACACAAAGTCTCCACTTTAAGGCCAATTATCTTGATTCCTATGAAAGATATCAAAAATGTTTCAACTGATAAATTGTTTATCATAATGTCAACAATATTTTACTAGTTTATAAACTTTTGATATCTTTCACAGGAATAGAGATGAATAGGCTCAAAGTGGATGATTCGGTTGGCTTCTATAGAAATATGGTAAGCTTCAAATCCATTCTCCCTAGTACCCCGGGGCACATCCGATCATTGGCAGACTCCAAAATATCAATGATTCATCCTTTCTGCACATTTTTGTGACCCGATTGTTTATCCAGCACATATGGGACACAAGTTACT</canonical>
            <polymorphic>TGTGACCTGAATAACTGAAAGATTTTAGTAAGTCATCTGACTGAATTTTTTATTGAAAACTTTCAAATTTTTCTTCATTTGTCTGCTTCATTTTTATTTATAAATAGAATCCTTTGGGATTACGGTATACCAAGCGGAAACGAGAGATTTTTATAGATCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAATAAAATTATAAAAGTTCATGTGATGAATTCATTTTTGTCGTCAAGCCAAACAATCTCCGAAATTGGAATGTTTCAATCAAACTGTAATCTCCTTTTCTAAAGATGACGTTTTCTGTTGCATGTAGTCAGATTTATTGAACAGCTCTTTAGAATACAAGTCACATCTCCCACATTTTTCCATGAACAACTCCTGAATAGTAGAACTCATTTTTAAACTGTAGCCAAGTTTTTTTTCAATTATCTCGATTCCTATGAAAGATATCWAAAATGTTGCAACTGATAAAATATTGTTGATATTATGATGAACAATTTCTCAGTTGACAAGTTTTTTATATCTTTCCCAAGAATCGAGATAATTGAGTTGAAAGTTGACGGTTTGGGTGAGCTTCTATAATACCAAATGGGCTAAATTTCGTTGTTACACTGTCACAAAGCTTACACAAAGTCTCCACTTTAAGGCCAATTATCTTGATTCCTATGAAAGATATCAAAAATGTTTCAACTGATAAATTGTTTATCATAATGTCAACAATATTTTACTAGTTTATAAACTTTTGATATCTTTCACAGGAATAGAGATGAATAGGCTCAAAGTGGATGATTCGGTTGGCTTCTATAGAAATATGGTAAGCTTCAAATCCATTCTCCCTAGTACCCCGGGGCACATCCGATCATTGGCAGACTCCAAAATATCAATGATTCATCCTTTCTGCACATTTTTGTGACCCGATTGTTTATCCAGCACATATGGGACACAAGTTACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATGAACAACTCCTGAATAGTA</pcr_primer_p1>
		<pcr_primer_p2>GAAATTTAGCCCATTTGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CCATGAACAACTCCTGAATAGTAGAACTCATTTTTAAACTGTAGCCAAGTTTTTTTTCAATTATCTCGATTCCTATGAAAGATATCAAAAATGTTGCAACTGATAAAATATTGTTGATATTATGATGAACAATTTCTCAGTTGACAAGTTTTTTATATCTTTCCCAAGAATCGAGATAATTGAGTTGAAAGTTGACGGTTTGGGTGAGCTTCTATAATACCAAATGGGCTAAATTTC</canonical_amplicon>
		<polymorphic_amplicon>CCATGAACAACTCCTGAATAGTAGAACTCATTTTTAAACTGTAGCCAAGTTTTTTTTCAATTATCTCGATTCCTATGAAAGATATCWAAAATGTTGCAACTGATAAAATATTGTTGATATTATGATGAACAATTTCTCAGTTGACAAGTTTTTTATATCTTTCCCAAGAATCGAGATAATTGAGTTGAAAGTTGACGGTTTGGGTGAGCTTCTATAATACCAAATGGGCTAAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25957</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>85391</contig_pos>
        <strand></strand>
        <context>tgaaagttga[C/T]ggtttgggtg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGTTTTTTATATCTTTCCCAAGAATCGAGATAATTGAGTTGAAAGTTGA</left_flank>
        <right_flank>GGTTTGGGTGAGCTTCTATAATACCAAATGGGCTAAATTTCGTTGTTACA</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTTTGGGATTACGGTATACCAAGCGGAAACGAGAGATTTTTATAGATCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAATAAAATTATAAAAGTTCATGTGATGAATTCATTTTTGTCGTCAAGCCAAACAATCTCCGAAATTGGAATGTTTCAATCAAACTGTAATCTCCTTTTCTAAAGATGACGTTTTCTGTTGCATGTAGTCAGATTTATTGAACAGCTCTTTAGAATACAAGTCACATCTCCCACATTTTTCCATGAACAACTCCTGAATAGTAGAACTCATTTTTAAACTGTAGCCAAGTTTTTTTTCAATTATCTCGATTCCTATGAAAGATATCAAAAATGTTGCAACTGATAAAATATTGTTGATATTATGATGAACAATTTCTCAGTTGACAAGTTTTTTATATCTTTCCCAAGAATCGAGATAATTGAGTTGAAAGTTGACGGTTTGGGTGAGCTTCTATAATACCAAATGGGCTAAATTTCGTTGTTACACTGTCACAAAGCTTACACAAAGTCTCCACTTTAAGGCCAATTATCTTGATTCCTATGAAAGATATCAAAAATGTTTCAACTGATAAATTGTTTATCATAATGTCAACAATATTTTACTAGTTTATAAACTTTTGATATCTTTCACAGGAATAGAGATGAATAGGCTCAAAGTGGATGATTCGGTTGGCTTCTATAGAAATATGGTAAGCTTCAAATCCATTCTCCCTAGTACCCCGGGGCACATCCGATCATTGGCAGACTCCAAAATATCAATGATTCATCCTTTCTGCACATTTTTGTGACCCGATTGTTTATCCAGCACATATGGGACACAAGTTACTATTTGTAACTGAAATAAGTTGTCTTTTGTCATCCTATGTTTGCCCTTTTCTCTGTTCCAATGCTCCTTGTTCTCTCAATCGAACTATTTCCCCTTTTTGTATTATTCTC</canonical>
            <polymorphic>TCCTTTGGGATTACGGTATACCAAGCGGAAACGAGAGATTTTTATAGATCAACTCTTACTAGGGACAAGAACTTATTTGTAAATAAATATTTGAATATTTCGGTTTGTTATAGACTTTCAGAAGGAATAAAATTATAAAAGTTCATGTGATGAATTCATTTTTGTCGTCAAGCCAAACAATCTCCGAAATTGGAATGTTTCAATCAAACTGTAATCTCCTTTTCTAAAGATGACGTTTTCTGTTGCATGTAGTCAGATTTATTGAACAGCTCTTTAGAATACAAGTCACATCTCCCACATTTTTCCATGAACAACTCCTGAATAGTAGAACTCATTTTTAAACTGTAGCCAAGTTTTTTTTCAATTATCTCGATTCCTATGAAAGATATCAAAAATGTTGCAACTGATAAAATATTGTTGATATTATGATGAACAATTTCTCAGTTGACAAGTTTTTTATATCTTTCCCAAGAATCGAGATAATTGAGTTGAAAGTTGAYGGTTTGGGTGAGCTTCTATAATACCAAATGGGCTAAATTTCGTTGTTACACTGTCACAAAGCTTACACAAAGTCTCCACTTTAAGGCCAATTATCTTGATTCCTATGAAAGATATCAAAAATGTTTCAACTGATAAATTGTTTATCATAATGTCAACAATATTTTACTAGTTTATAAACTTTTGATATCTTTCACAGGAATAGAGATGAATAGGCTCAAAGTGGATGATTCGGTTGGCTTCTATAGAAATATGGTAAGCTTCAAATCCATTCTCCCTAGTACCCCGGGGCACATCCGATCATTGGCAGACTCCAAAATATCAATGATTCATCCTTTCTGCACATTTTTGTGACCCGATTGTTTATCCAGCACATATGGGACACAAGTTACTATTTGTAACTGAAATAAGTTGTCTTTTGTCATCCTATGTTTGCCCTTTTCTCTGTTCCAATGCTCCTTGTTCTCTCAATCGAACTATTTCCCCTTTTTGTATTATTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>448 195 157 134 51 15</canonical_bands>
                <polymorphic_bands>448 208 195 134 15</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>446 346 157 51</canonical_bands>
                <polymorphic_bands>446 346 208</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>428 346 157 51 18</canonical_bands>
                <polymorphic_bands>428 346 208 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCCTGAATAGTAGAACTCATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGTGTAAGCTTTGTGACAGTGTA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CTCCTGAATAGTAGAACTCATTTTTAAACTGTAGCCAAGTTTTTTTTCAATTATCTCGATTCCTATGAAAGATATCAAAAATGTTGCAACTGATAAAATATTGTTGATATTATGATGAACAATTTCTCAGTTGACAAGTTTTTTATATCTTTCCCAAGAATCGAGATAATTGAGTTGAAAGTTGACGGTTTGGGTGAGCTTCTATAATACCAAATGGGCTAAATTTCGTTGTTACACTGTCACAAAGCTTACACA</canonical_amplicon>
		<polymorphic_amplicon>CTCCTGAATAGTAGAACTCATTTTTAAACTGTAGCCAAGTTTTTTTTCAATTATCTCGATTCCTATGAAAGATATCAAAAATGTTGCAACTGATAAAATATTGTTGATATTATGATGAACAATTTCTCAGTTGACAAGTTTTTTATATCTTTCCCAAGAATCGAGATAATTGAGTTGAAAGTTGAYGGTTTGGGTGAGCTTCTATAATACCAAATGGGCTAAATTTCGTTGTTACACTGTCACAAAGCTTACACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25958</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>99904</contig_pos>
        <strand></strand>
        <context>AAAACTGGGG[G/T]TTTTTCCAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTATTCCTTTGAATATCGAAGCAAATAAAATTTGTGAAAAAAAACTGGGG</left_flank>
        <right_flank>TTTTTCCAGGTTGACCGAATCTCGTTCCAATCCAGACACTGATCCATTAT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCTCCATATACGAGAACAGTGATTAAACAAACAGAGTGACAAAGACTTTCCCGCCAACCTAATAGTATCATTTTGTAGTGCTTGCCAAGTTCTATCGTATCTAATTTAGCTGGTCCAAAAGTATTGGTCCTAAAAGAAACTATGACAGGGCCCGGTTTACAATTATGCTTTAAACATTAACGTTCAGTTTACAGTAGCCCAAAAATATCATAAATAACTCTTAATGAATTTTATTCCTGCCTAGTCATCATGTTCTGACATAAATTTCCAAAATTTATCATCGTTTTTCTGATTCAAAGTCATCAAACTTCTGTCATCCTAATAGCTTACTCTCCCGTTTTCTTTCCATTTTTCCACCTCAGCAAAATTGCGGTAGTCACCTAATTCAGTCATAATTCTTACGTAATTCTCGCAAAATCTAGTCAGAAACTTACTGATAACGGTGCTGTATTCCTTTGAATATCGAAGCAAATAAAATTTGTGAAAAAAAACTGGGGGTTTTTCCAGGTTGACCGAATCTCGTTCCAATCCAGACACTGATCCATTATTGGTATGGTTCAACGGAGGACCCGGTTGCTCTTCTTTAGGAGGTCTCTTTGAAGAACTTGGTCCATTTTATGTGAACTTTGACGGAGAAACACTTTATGAGAATCCGTACGCATGGAACGCGGTTAGTAATTCCGCATCAATGAATAGAATGAGCATACGCAACAATTACAGAAAGCTAATGTGCTCTATTTGGAATCTCCAATCGGTGTCGGATACTCATACGACACAACCACTCCCGGATACTTCCAAGCCAACGATAACCAAACGGCTGGTCAGAACTATCTCGCTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTAAACTACAATTGTATTATTTTTATTTCAGAGCTCAACCAAAATACGCCAACCGTACATTCTATCTTTCCGGGGAGTCGTATGCTGGAATTTATATTCCAATGCTTACTGATCTCATTGT</canonical>
            <polymorphic>AGCCTCCATATACGAGAACAGTGATTAAACAAACAGAGTGACAAAGACTTTCCCGCCAACCTAATAGTATCATTTTGTAGTGCTTGCCAAGTTCTATCGTATCTAATTTAGCTGGTCCAAAAGTATTGGTCCTAAAAGAAACTATGACAGGGCCCGGTTTACAATTATGCTTTAAACATTAACGTTCAGTTTACAGTAGCCCAAAAATATCATAAATAACTCTTAATGAATTTTATTCCTGCCTAGTCATCATGTTCTGACATAAATTTCCAAAATTTATCATCGTTTTTCTGATTCAAAGTCATCAAACTTCTGTCATCCTAATAGCTTACTCTCCCGTTTTCTTTCCATTTTTCCACCTCAGCAAAATTGCGGTAGTCACCTAATTCAGTCATAATTCTTACGTAATTCTCGCAAAATCTAGTCAGAAACTTACTGATAACGGTGCTGTATTCCTTTGAATATCGAAGCAAATAAAATTTGTGAAAAAAAACTGGGGKTTTTTCCAGGTTGACCGAATCTCGTTCCAATCCAGACACTGATCCATTATTGGTATGGTTCAACGGAGGACCCGGTTGCTCTTCTTTAGGAGGTCTCTTTGAAGAACTTGGTCCATTTTATGTGAACTTTGACGGAGAAACACTTTATGAGAATCCGTACGCATGGAACGCGGTTAGTAATTCCGCATCAATGAATAGAATGAGCATACGCAACAATTACAGAAAGCTAATGTGCTCTATTTGGAATCTCCAATCGGTGTCGGATACTCATACGACACAACCACTCCCGGATACTTCCAAGCCAACGATAACCAAACGGCTGGTCAGAACTATCTCGCTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTAAACTACAATTGTATTATTTTTATTTCAGAGCTCAACCAAAATACGCCAACCGTACATTCTATCTTTCCGGGGAGTCGTATGCTGGAATTTATATTCCAATGCTTACTGATCTCATTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCAAAATCTAGTCAGAAACTTA</pcr_primer_p1>
		<pcr_primer_p2>TACGGATTCTCATAAAGTGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CGCAAAATCTAGTCAGAAACTTACTGATAACGGTGCTGTATTCCTTTGAATATCGAAGCAAATAAAATTTGTGAAAAAAAACTGGGGGTTTTTCCAGGTTGACCGAATCTCGTTCCAATCCAGACACTGATCCATTATTGGTATGGTTCAACGGAGGACCCGGTTGCTCTTCTTTAGGAGGTCTCTTTGAAGAACTTGGTCCATTTTATGTGAACTTTGACGGAGAAACACTTTATGAGAATCCGTA</canonical_amplicon>
		<polymorphic_amplicon>CGCAAAATCTAGTCAGAAACTTACTGATAACGGTGCTGTATTCCTTTGAATATCGAAGCAAATAAAATTTGTGAAAAAAAACTGGGGKTTTTTCCAGGTTGACCGAATCTCGTTCCAATCCAGACACTGATCCATTATTGGTATGGTTCAACGGAGGACCCGGTTGCTCTTCTTTAGGAGGTCTCTTTGAAGAACTTGGTCCATTTTATGTGAACTTTGACGGAGAAACACTTTATGAGAATCCGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25959</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>100505</contig_pos>
        <strand>+</strand>
        <context>TTTAGGGATC[C/T]GCAATCGGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGAAAATTATACAAATTTCCGCTAATCTTAATTTTGGCTTTAGGGATC</left_flank>
        <right_flank>GCAATCGGAAACGGATTCATGAATGTAAAGGGACTTCTGAATGCACTTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAACTTGGTCCATTTTATGTGAACTTTGACGGAGAAACACTTTATGAGAATCCGTACGCATGGAACGCGGTTAGTAATTCCGCATCAATGAATAGAATGAGCATACGCAACAATTACAGAAAGCTAATGTGCTCTATTTGGAATCTCCAATCGGTGTCGGATACTCATACGACACAACCACTCCCGGATACTTCCAAGCCAACGATAACCAAACGGCTGGTCAGAACTATCTCGCTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTAAACTACAATTGTATTATTTTTATTTCAGAGCTCAACCAAAATACGCCAACCGTACATTCTATCTTTCCGGGGAGTCGTATGCTGGAATTTATATTCCAATGCTTACTGATCTCATTGTCCAGGGAATCAACAATGCAACGAACCCTTTCCCAAACAAAAACTTCCAGGTTTGAAAATTATACAAATTTCCGCTAATCTTAATTTTGGCTTTAGGGATCCGCAATCGGAAACGGATTCATGAATGTAAAGGGACTTCTGAATGCACTTGCTTTGTGGAGTGCCTACCATGGACGTGTTTCTGTCCAGTAAGATAAATTGTTGAGAACAGGCAAATTACAGAAATTTGTTTACAGAGACTGGGACAATATTAAAAACAACTGTACAAACAACACCGATATGGACAACTTTGAATTCTCGAAATTTACAACCTCCAAAAATAAGATCGATTACGTTGGAGATGATTCATATTGCGGAAAGTTGATCCAACCACTTATTTCTCAAAACGCAGATAACACTGAAGGGTGGGAGGTTTCTTAAAAATCTGGTAGTCTATCTTATTTTTCAGATTTGACCAATACAATTTCTATCAAGAGTGCTACGACAAATCTGTTTTCCAAGCACCACCACCATCTGCTTCCGGAAAGAGAGTGAAGAGAAGTGCATTGGCTGGAGTTTCTGCTATTCATAAGCAGTACCAACAACTCGGAAGCTTCAAGGGA</canonical>
            <polymorphic>AAGAACTTGGTCCATTTTATGTGAACTTTGACGGAGAAACACTTTATGAGAATCCGTACGCATGGAACGCGGTTAGTAATTCCGCATCAATGAATAGAATGAGCATACGCAACAATTACAGAAAGCTAATGTGCTCTATTTGGAATCTCCAATCGGTGTCGGATACTCATACGACACAACCACTCCCGGATACTTCCAAGCCAACGATAACCAAACGGCTGGTCAGAACTATCTCGCTCTTACCAACTTCTTCAAAGTGTAATTGATTCTGGTTTTTCGTAAACTACAATTGTATTATTTTTATTTCAGAGCTCAACCAAAATACGCCAACCGTACATTCTATCTTTCCGGGGAGTCGTATGCTGGAATTTATATTCCAATGCTTACTGATCTCATTGTCCAGGGAATCAACAATGCAACGAACCCTTTCCCAAACAAAAACTTCCAGGTTTGAAAATTATACAAATTTCCGCTAATCTTAATTTTGGCTTTAGGGATCYGCAATCGGAAACGGATTCATGAATGTAAAGGGACTTCTGAATGCACTTGCTTTGTGGAGTGCCTACCATGGACGTGTTTCTGTCCAGTAAGATAAATTGTTGAGAACAGGCAAATTACAGAAATTTGTTTACAGAGACTGGGACAATATTAAAAACAACTGTACAAACAACACCGATATGGACAACTTTGAATTCTCGAAATTTACAACCTCCAAAAATAAGATCGATTACGTTGGAGATGATTCATATTGCGGAAAGTTGATCCAACCACTTATTTCTCAAAACGCAGATAACACTGAAGGGTGGGAGGTTTCTTAAAAATCTGGTAGTCTATCTTATTTTTCAGATTTGACCAATACAATTTCTATCAAGAGTGCTACGACAAATCTGTTTTCCAAGCACCACCACCATCTGCTTCCGGAAAGAGAGTGAAGAGAAGTGCATTGGCTGGAGTTTCTGCTATTCATAAGCAGTACCAACAACTCGGAAGCTTCAAGGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 388 82 29</canonical_bands>
                <polymorphic_bands>530 388 82</polymorphic_bands>
            </assay>
            <assay>
                <site>GGATCC</site>
                <isoschizomers>
                    <enzyme>BamHI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACTTCCAGGTTTGAAAATTA</pcr_primer_p1>
		<pcr_primer_p2>ATATCGGTGTTGTTTGTACAGTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AAAACTTCCAGGTTTGAAAATTATACAAATTTCCGCTAATCTTAATTTTGGCTTTAGGGATCCGCAATCGGAAACGGATTCATGAATGTAAAGGGACTTCTGAATGCACTTGCTTTGTGGAGTGCCTACCATGGACGTGTTTCTGTCCAGTAAGATAAATTGTTGAGAACAGGCAAATTACAGAAATTTGTTTACAGAGACTGGGACAATATTAAAAACAACTGTACAAACAACACCGATAT</canonical_amplicon>
		<polymorphic_amplicon>AAAACTTCCAGGTTTGAAAATTATACAAATTTCCGCTAATCTTAATTTTGGCTTTAGGGATCYGCAATCGGAAACGGATTCATGAATGTAAAGGGACTTCTGAATGCACTTGCTTTGTGGAGTGCCTACCATGGACGTGTTTCTGTCCAGTAAGATAAATTGTTGAGAACAGGCAAATTACAGAAATTTGTTTACAGAGACTGGGACAATATTAAAAACAACTGTACAAACAACACCGATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25960</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>121708</contig_pos>
        <strand></strand>
        <context>cccatatcgc[C/G]ctagtttgaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCGCCAACTCTCGTTACATGTAATTTTCAACATTTTGATACCCATATCGC</left_flank>
        <right_flank>CTAGTTTGAAGAACTTCATATTCAGAATTCTGAAGACGCCAATATTCAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTTTGGAATATTATGTAAACGTGCTCGAACGCTAAGATACGAAGTTAGCAAAAAAAATGACTCAAAAAATGGCTGAAATGGCTCAAAAAACTTTGACGTCTTCTGAAAATCTTAAATCGCAATTTTCTAAAATTTTTATATTGTCGACATTCTTTTCCATGTAATTTCCAACATTTTGGTATCCATATCGCCCTTGTTTGGAGAATTTCGAATTCAGTATTCAGAAGAAAAAAATCAGAATCTCACTAAACTAGGAATCTCACTAAATCTCAAAATCTCACTAAGTCTCACTAAATGTCAGAAATCAGTTGAATAAGAAAGTTAACGACATACAAAAAATTTCAGACAAAGCGTTTTGAGAGATTCGGAATATATCAAAATTTCTAATTTCACTAAACTGGGCCAATTACTGAATTCTGAAAACGCATCTTTCAGAAATACTTGTGTCGCCAACTCTCGTTACATGTAATTTTCAACATTTTGATACCCATATCGCCCTAGTTTGAAGAACTTCATATTCAGAATTCTGAAGACGCCAATATTCAGAATCTCTTCACACAAGGTCACGGGGTTGCAACAGGGTACATGCATTCAAATTTTTCTCAGTGCTCTTGGGCGCGTTGCGCTGCGCAACGCGGCTGAATTTCGGCTTGGAATTTGGAATTTCCAATTCAAAAAATGATGGTTTGGCACGGTGCCAAGTCTTTGAACTCGAGGTGTGCGACAAAGCGCGTTTTTTTGAGGTTGCCGCCAGCAATTCCGTGCTAGGTCGATGTGGGTATTAGAATGTCGGGAATTACACAAAAAAGAGAGTTAACGACATGAAATTTTTATAAATGCGCGTTTTCAAAATTCGGATGACGTTGAAGTTTTCGAAAACTTCACCAGTTCAATTTAAAGCCTTGGCGTTAAAACCGATGCTAATATGACTGTAGTATTACATGACTTGCGTTTGAGCGCATTTTGTTCGTAATATACACCGTGCATTTTTCTGTCT</canonical>
            <polymorphic>TATTTTTGGAATATTATGTAAACGTGCTCGAACGCTAAGATACGAAGTTAGCAAAAAAAATGACTCAAAAAATGGCTGAAATGGCTCAAAAAACTTTGACGTCTTCTGAAAATCTTAAATCGCAATTTTCTAAAATTTTTATATTGTCGACATTCTTTTCCATGTAATTTCCAACATTTTGGTATCCATATCGCCCTTGTTTGGAGAATTTCGAATTCAGTATTCAGAAGAAAAAAATCAGAATCTCACTAAACTAGGAATCTCACTAAATCTCAAAATCTCACTAAGTCTCACTAAATGTCAGAAATCAGTTGAATAAGAAAGTTAACGACATACAAAAAATTTCAGACAAAGCGTTTTGAGAGATTCGGAATATATCAAAATTTCTAATTTCACTAAACTGGGCCAATTACTGAATTCTGAAAACGCATCTTTCAGAAATACTTGTGTCGCCAACTCTCGTTACATGTAATTTTCAACATTTTGATACCCATATCGCSCTAGTTTGAAGAACTTCATATTCAGAATTCTGAAGACGCCAATATTCAGAATCTCTTCACACAAGGTCACGGGGTTGCAACAGGGTACATGCATTCAAATTTTTCTCAGTGCTCTTGGGCGCGTTGCGCTGCGCAACGCGGCTGAATTTCGGCTTGGAATTTGGAATTTCCAATTCAAAAAATGATGGTTTGGCACGGTGCCAAGTCTTTGAACTCGAGGTGTGCGACAAAGCGCGTTTTTTTGAGGTTGCCGCCAGCAATTCCGTGCTAGGTCGATGTGGGTATTAGAATGTCGGGAATTACACAAAAAAGAGAGTTAACGACATGAAATTTTTATAAATGCGCGTTTTCAAAATTCGGATGACGTTGAAGTTTTCGAAAACTTCACCAGTTCAATTTAAAGCCTTGGCGTTAAAACCGATGCTAATATGACTGTAGTATTACATGACTTGCGTTTGAGCGCATTTTGTTCGTAATATACACCGTGCATTTTTCTGTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAAGATACGAAGTTAGCAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAAAATTTGAATGCATGTACC</pcr_primer_p2>
		<pcr_amplicon_size>572</pcr_amplicon_size>
		<canonical_amplicon>GCTAAGATACGAAGTTAGCAAAAAAAATGACTCAAAAAATGGCTGAAATGGCTCAAAAAACTTTGACGTCTTCTGAAAATCTTAAATCGCAATTTTCTAAAATTTTTATATTGTCGACATTCTTTTCCATGTAATTTCCAACATTTTGGTATCCATATCGCCCTTGTTTGGAGAATTTCGAATTCAGTATTCAGAAGAAAAAAATCAGAATCTCACTAAACTAGGAATCTCACTAAATCTCAAAATCTCACTAAGTCTCACTAAATGTCAGAAATCAGTTGAATAAGAAAGTTAACGACATACAAAAAATTTCAGACAAAGCGTTTTGAGAGATTCGGAATATATCAAAATTTCTAATTTCACTAAACTGGGCCAATTACTGAATTCTGAAAACGCATCTTTCAGAAATACTTGTGTCGCCAACTCTCGTTACATGTAATTTTCAACATTTTGATACCCATATCGCCCTAGTTTGAAGAACTTCATATTCAGAATTCTGAAGACGCCAATATTCAGAATCTCTTCACACAAGGTCACGGGGTTGCAACAGGGTACATGCATTCAAATTTTTC</canonical_amplicon>
		<polymorphic_amplicon>GCTAAGATACGAAGTTAGCAAAAAAAATGACTCAAAAAATGGCTGAAATGGCTCAAAAAACTTTGACGTCTTCTGAAAATCTTAAATCGCAATTTTCTAAAATTTTTATATTGTCGACATTCTTTTCCATGTAATTTCCAACATTTTGGTATCCATATCGCCCTTGTTTGGAGAATTTCGAATTCAGTATTCAGAAGAAAAAAATCAGAATCTCACTAAACTAGGAATCTCACTAAATCTCAAAATCTCACTAAGTCTCACTAAATGTCAGAAATCAGTTGAATAAGAAAGTTAACGACATACAAAAAATTTCAGACAAAGCGTTTTGAGAGATTCGGAATATATCAAAATTTCTAATTTCACTAAACTGGGCCAATTACTGAATTCTGAAAACGCATCTTTCAGAAATACTTGTGTCGCCAACTCTCGTTACATGTAATTTTCAACATTTTGATACCCATATCGCSCTAGTTTGAAGAACTTCATATTCAGAATTCTGAAGACGCCAATATTCAGAATCTCTTCACACAAGGTCACGGGGTTGCAACAGGGTACATGCATTCAAATTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25961</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>121846</contig_pos>
        <strand>+</strand>
        <context>GCTGCGCAAC[A/G]CGGCTGAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATGCATTCAAATTTTTCTCAGTGCTCTTGGGCGCGTTGCGCTGCGCAAC</left_flank>
        <right_flank>CGGCTGAATTTCGGCTTGGAATTTGGAATTTCCAATTCAAAAAATGATGG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATATTGTCGACATTCTTTTCCATGTAATTTCCAACATTTTGGTATCCATATCGCCCTTGTTTGGAGAATTTCGAATTCAGTATTCAGAAGAAAAAAATCAGAATCTCACTAAACTAGGAATCTCACTAAATCTCAAAATCTCACTAAGTCTCACTAAATGTCAGAAATCAGTTGAATAAGAAAGTTAACGACATACAAAAAATTTCAGACAAAGCGTTTTGAGAGATTCGGAATATATCAAAATTTCTAATTTCACTAAACTGGGCCAATTACTGAATTCTGAAAACGCATCTTTCAGAAATACTTGTGTCGCCAACTCTCGTTACATGTAATTTTCAACATTTTGATACCCATATCGCCCTAGTTTGAAGAACTTCATATTCAGAATTCTGAAGACGCCAATATTCAGAATCTCTTCACACAAGGTCACGGGGTTGCAACAGGGTACATGCATTCAAATTTTTCTCAGTGCTCTTGGGCGCGTTGCGCTGCGCAACGCGGCTGAATTTCGGCTTGGAATTTGGAATTTCCAATTCAAAAAATGATGGTTTGGCACGGTGCCAAGTCTTTGAACTCGAGGTGTGCGACAAAGCGCGTTTTTTTGAGGTTGCCGCCAGCAATTCCGTGCTAGGTCGATGTGGGTATTAGAATGTCGGGAATTACACAAAAAAGAGAGTTAACGACATGAAATTTTTATAAATGCGCGTTTTCAAAATTCGGATGACGTTGAAGTTTTCGAAAACTTCACCAGTTCAATTTAAAGCCTTGGCGTTAAAACCGATGCTAATATGACTGTAGTATTACATGACTTGCGTTTGAGCGCATTTTGTTCGTAATATACACCGTGCATTTTTCTGTCTTACCATAAAGCTGTGAAGATCCCCAAGCCATTTCCGCTACACTGGCATAGTTAGCAGGTTTCAACTTGAGCATAACCAAAAGCCATCTCCAAAACTTATAAACCCATCGGAAAAGTGCGAGAGAAACAACAACTGATG</canonical>
            <polymorphic>TTATATTGTCGACATTCTTTTCCATGTAATTTCCAACATTTTGGTATCCATATCGCCCTTGTTTGGAGAATTTCGAATTCAGTATTCAGAAGAAAAAAATCAGAATCTCACTAAACTAGGAATCTCACTAAATCTCAAAATCTCACTAAGTCTCACTAAATGTCAGAAATCAGTTGAATAAGAAAGTTAACGACATACAAAAAATTTCAGACAAAGCGTTTTGAGAGATTCGGAATATATCAAAATTTCTAATTTCACTAAACTGGGCCAATTACTGAATTCTGAAAACGCATCTTTCAGAAATACTTGTGTCGCCAACTCTCGTTACATGTAATTTTCAACATTTTGATACCCATATCGCCCTAGTTTGAAGAACTTCATATTCAGAATTCTGAAGACGCCAATATTCAGAATCTCTTCACACAAGGTCACGGGGTTGCAACAGGGTACATGCATTCAAATTTTTCTCAGTGCTCTTGGGCGCGTTGCGCTGCGCAACRCGGCTGAATTTCGGCTTGGAATTTGGAATTTCCAATTCAAAAAATGATGGTTTGGCACGGTGCCAAGTCTTTGAACTCGAGGTGTGCGACAAAGCGCGTTTTTTTGAGGTTGCCGCCAGCAATTCCGTGCTAGGTCGATGTGGGTATTAGAATGTCGGGAATTACACAAAAAAGAGAGTTAACGACATGAAATTTTTATAAATGCGCGTTTTCAAAATTCGGATGACGTTGAAGTTTTCGAAAACTTCACCAGTTCAATTTAAAGCCTTGGCGTTAAAACCGATGCTAATATGACTGTAGTATTACATGACTTGCGTTTGAGCGCATTTTGTTCGTAATATACACCGTGCATTTTTCTGTCTTACCATAAAGCTGTGAAGATCCCCAAGCCATTTCCGCTACACTGGCATAGTTAGCAGGTTTCAACTTGAGCATAACCAAAAGCCATCTCCAAAACTTATAAACCCATCGGAAAAGTGCGAGAGAAACAACAACTGATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>483 294 110 96 17</canonical_bands>
                <polymorphic_bands>483 294 113 110</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>493 385 112 10</canonical_bands>
                <polymorphic_bands>493 385 122</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>503 385 112</canonical_bands>
                <polymorphic_bands>615 385</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTACATGCATTCAAATTTTTCTC</pcr_primer_p1>
		<pcr_primer_p2>CACACCTCGAGTTCAAAGAC</pcr_primer_p2>
		<pcr_amplicon_size>140</pcr_amplicon_size>
		<canonical_amplicon>GTACATGCATTCAAATTTTTCTCAGTGCTCTTGGGCGCGTTGCGCTGCGCAACGCGGCTGAATTTCGGCTTGGAATTTGGAATTTCCAATTCAAAAAATGATGGTTTGGCACGGTGCCAAGTCTTTGAACTCGAGGTGTG</canonical_amplicon>
		<polymorphic_amplicon>GTACATGCATTCAAATTTTTCTCAGTGCTCTTGGGCGCGTTGCGCTGCGCAACRCGGCTGAATTTCGGCTTGGAATTTGGAATTTCCAATTCAAAAAATGATGGTTTGGCACGGTGCCAAGTCTTTGAACTCGAGGTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25962</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>124292</contig_pos>
        <strand></strand>
        <context>CAACGCGCGC[A/G]TGCGTAATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTATTCGTCCGCTCGGAGCCGGTAGTATTTACGATAAACAACGCGCGC</left_flank>
        <right_flank>TGCGTAATGACGGAGTGTCGTTGCCAGTGCTAGCATTCAAAAAGAAGCCT</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGTAGAACCACGAACGTAGGCTTCTGACATTTTGAAAAATTTGTCTCCGTCCTGAAAAATTTTTTGTCAAAATATTTTTTGATAAAATGTCATTCAAGCTTCGCCACTGAATAGTGTTATATTTGAAAACAAACCTTGGATGTGAAAATGACATCAACGAGGTGAATGTTCATCCATGCATCGCAAGCCTTCAAATGTCCATTGTAGGTTTCTCCATTTTTCAGCTCTACGAGCATCGGATGATTTTGAGCGGTCTTCAGAAGTGAAAGAGGCAGCTGAAAAATATAACTAGGTTGAAATGTTCAACAAAAAAGAACAACTAACCACCATGATGAATTTTTGATTGCTATTTCGGTATCAATAGTGAATGTTTGTGATTCTTGATAAGGATTTCTGAAAAGGAAATCGATAATGAGTGAGAAGTCCGAAGGCGTTGATTCGAAAAAAAAATTATTCGTCCGCTCGGAGCCGGTAGTATTTACGATAAACAACGCGCGCATGCGTAATGACGGAGTGTCGTTGCCAGTGCTAGCATTCAAAAAGAAGCCTTTTTCTATCGATTTTCGTACAATTTATGAGAAAAAGAAGGAGGGCATTTAGATGAATCTCTAAAATCTATTAAGATTTTTTTTAACGAAATCGATATTTTACAGGTGATATGCCCAACGATAGTTCAGAGCCACCAACGTGCTTCAGCTGTACATTGCAATTGACGGAAACTATACATGTTAAATGTAATGAGTGTCCAGTCAGCGTCTGTATGCTTGTGAGTAGTATTTGTACTTTGAAAATTTGCTGAATAAATAACTCGTTACAGTGCTTCCAATGTGGCGCCGAATCTTCACCACATAAGCGAGGACACAACTATGAGCTCGTGAAACCATACGAAGATGGTGATGGAATGACTTGGACCCATCAAGACGAATTCGAGTTGCTGAAAGCTGCTCATAAGTTTAAAATGGGCAACTGGGGAGAGATTGCCGAGAGCATTGGCCGCGG</canonical>
            <polymorphic>TAGTAGAACCACGAACGTAGGCTTCTGACATTTTGAAAAATTTGTCTCCGTCCTGAAAAATTTTTTGTCAAAATATTTTTTGATAAAATGTCATTCAAGCTTCGCCACTGAATAGTGTTATATTTGAAAACAAACCTTGGATGTGAAAATGACATCAACGAGGTGAATGTTCATCCATGCATCGCAAGCCTTCAAATGTCCATTGTAGGTTTCTCCATTTTTCAGCTCTACGAGCATCGGATGATTTTGAGCGGTCTTCAGAAGTGAAAGAGGCAGCTGAAAAATATAACTAGGTTGAAATGTTCAACAAAAAAGAACAACTAACCACCATGATGAATTTTTGATTGCTATTTCGGTATCAATAGTGAATGTTTGTGATTCTTGATAAGGATTTCTGAAAAGGAAATCGATAATGAGTGAGAAGTCCGAAGGCGTTGATTCGAAAAAAAAATTATTCGTCCGCTCGGAGCCGGTAGTATTTACGATAAACAACGCGCGCRTGCGTAATGACGGAGTGTCGTTGCCAGTGCTAGCATTCAAAAAGAAGCCTTTTTCTATCGATTTTCGTACAATTTATGAGAAAAAGAAGGAGGGCATTTAGATGAATCTCTAAAATCTATTAAGATTTTTTTTAACGAAATCGATATTTTACAGGTGATATGCCCAACGATAGTTCAGAGCCACCAACGTGCTTCAGCTGTACATTGCAATTGACGGAAACTATACATGTTAAATGTAATGAGTGTCCAGTCAGCGTCTGTATGCTTGTGAGTAGTATTTGTACTTTGAAAATTTGCTGAATAAATAACTCGTTACAGTGCTTCCAATGTGGCGCCGAATCTTCACCACATAAGCGAGGACACAACTATGAGCTCGTGAAACCATACGAAGATGGTGATGGAATGACTTGGACCCATCAAGACGAATTCGAGTTGCTGAAAGCTGCTCATAAGTTTAAAATGGGCAACTGGGGAGAGATTGCCGAGAGCATTGGCCGCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCATGC</site>
                <isoschizomers>
                    <enzyme>BbuI</enzyme>
                    <enzyme>PaeI</enzyme>
                    <enzyme>SpaHI</enzyme>
                    <enzyme>SphI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>502 271 227</canonical_bands>
                <polymorphic_bands>729 271</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>274 227 176 170 153</canonical_bands>
                <polymorphic_bands>397 274 176 153</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGATGAATTTTTGATTGCTATT</pcr_primer_p1>
		<pcr_primer_p2>CATAAATTGTACGAAAATCGATAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGATGAATTTTTGATTGCTATTTCGGTATCAATAGTGAATGTTTGTGATTCTTGATAAGGATTTCTGAAAAGGAAATCGATAATGAGTGAGAAGTCCGAAGGCGTTGATTCGAAAAAAAAATTATTCGTCCGCTCGGAGCCGGTAGTATTTACGATAAACAACGCGCGCATGCGTAATGACGGAGTGTCGTTGCCAGTGCTAGCATTCAAAAAGAAGCCTTTTTCTATCGATTTTCGTACAATTTATG</canonical_amplicon>
		<polymorphic_amplicon>ATGATGAATTTTTGATTGCTATTTCGGTATCAATAGTGAATGTTTGTGATTCTTGATAAGGATTTCTGAAAAGGAAATCGATAATGAGTGAGAAGTCCGAAGGCGTTGATTCGAAAAAAAAATTATTCGTCCGCTCGGAGCCGGTAGTATTTACGATAAACAACGCGCGCRTGCGTAATGACGGAGTGTCGTTGCCAGTGCTAGCATTCAAAAAGAAGCCTTTTTCTATCGATTTTCGTACAATTTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25963</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>148827</contig_pos>
        <strand></strand>
        <context>TGAAGTCGAG[C/A]TAACCGGCTR</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AGAAATAATAAATTAGTTCATTTTACGAGCAACTGTAGCCTGAAGTCGAG</left_flank>
        <right_flank>TAACCGGCTATTGGTTGGAGCTCGTTTTGGCTCTTCACAGGAAGAGATTT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGTCACTAGAGGTCTTGGCATTTTGTCAAACTTGCAGTCTGCACCTGAAGTTATTTATTGGGATTTAAAAAGTACAGCGTTCGGTTTAGCAATTGATTCTAACCTTTTGTCTCCTGCCAGTAAACGCCAAAACAGAATTTTCATGACCAAAACGAAAAACGTAATTATCAAACTGTTTTATGTTTGGGCTAAAGAATTTAACAATAATAATTTATTAAATTTCAAAATGCAGCTTTCACATAAATTTGAACCAAAATAGGAGTGAGATCGAAGTGTAGCATCAGTAGTAGATGAGATTTTTTGAATCCATGGATGACGGTTTCAGGGGAGATCCGAGAGAAGTTGTACCAGTTGGAGTTGGAAGCAATAATTTAATAAATAGAGTGTGGAATATGCACACAGTCGGAATATAGAATCAATTGGATTCGTATTGAAATAAATTATTTTAGAAATAATAAATTAGTTCATTTTACGAGCAACTGTAGCCTGAAGTCGAGCTAACCGGCTATTGGTTGGAGCTCGTTTTGGCTCTTCACAGGAAGAGATTTCGTTGTGGGTTGGAAGATGGAACATAATTTACTAGAGAAGACGTTGAGATGTAAAACAACATAATTTTTCAGACGATTCCCCTCCTATTTATACTAGTGATAAGTCTCCTCCCACTTTGATAGTAGTAGATGATTTTAACAAATTGTTTTTTTGTTGTCAAGTTTCGTTTTTAGAGTTGAAACTTCGGATGGAGATTAGGGCTAGAAGAAGGTGAATATCTAACATGTTTGAAGATAAAATGAGATATCTTTTGATTTCAGGGAAACACGGAAAAGTGCAAAAAGTCGCCAACTGAAGTTCCCATCACAAAAAGAACCGGTTTTTACTATCTTCCCTCTTTTGATATCAGTGTCCACGAGAGACAATCATTGTCATTTGTCAAATGTCAAATGTCATTTTGCCACATTGCCACTATTCTTATCAGTTTGTATGTCTTTCTGCTTCTCTGA</canonical>
            <polymorphic>AATGTCACTAGAGGTCTTGGCATTTTGTCAAACTTGCAGTCTGCACCTGAAGTTATTTATTGGGATTTAAAAAGTACAGCGTTCGGTTTAGCAATTGATTCTAACCTTTTGTCTCCTGCCAGTAAACGCCAAAACAGAATTTTCATGACCAAAACGAAAAACGTAATTATCAAACTGTTTTATGTTTGGGCTAAAGAATTTAACAATAATAATTTATTAAATTTCAAAATGCAGCTTTCACATAAATTTGAACCAAAATAGGAGTGAGATCGAAGTGTAGCATCAGTAGTAGATGAGATTTTTTGAATCCATGGATGACGGTTTCAGGGGAGATCCGAGAGAAGTTGTACCAGTTGGAGTTGGAAGCAATAATTTAATAAATAGAGTGTGGAATATGCACACAGTCGGAATATAGAATCAATTGGATTCGTATTGAAATAAATTATTTTAGAAATAATAAATTAGTTCATTTTACGAGCAACTGTAGCCTGAAGTCGAGMTAACCGGCTATTGGTTGGAGCTCGTTTTGGCTCTTCACAGGAAGAGATTTCGTTGTGGGTTGGAAGATGGAACATAATTTACTAGAGAAGACGTTGAGATGTAAAACAACATAATTTTTCAGACGATTCCCCTCCTATTTATACTAGTGATAAGTCTCCTCCCACTTTGATAGTAGTAGATGATTTTAACAAATTGTTTTTTTGTTGTCAAGTTTCGTTTTTAGAGTTGAAACTTCGGATGGAGATTAGGGCTAGAAGAAGGTGAATATCTAACATGTTTGAAGATAAAATGAGATATCTTTTGATTTCAGGGAAACACGGAAAAGTGCAAAAAGTCGCCAACTGAAGTTCCCATCACAAAAAGAACCGGTTTTTACTATCTTCCCTCTTTTGATATCAGTGTCCACGAGAGACAATCATTGTCATTTGTCAAATGTCAAATGTCATTTTGCCACATTGCCACTATTCTTATCAGTTTGTATGTCTTTCTGCTTCTCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>480 265 234 21</canonical_bands>
                <polymorphic_bands>480 286 234</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>253 249 221 190 44 13 12 10 8</canonical_bands>
                <polymorphic_bands>253 249 221 190 44 20 13 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAGTTGGAAGCAATAATTTAATA</pcr_primer_p1>
		<pcr_primer_p2>TTTTACATCTCAACGTCTTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGAGTTGGAAGCAATAATTTAATAAATAGAGTGTGGAATATGCACACAGTCGGAATATAGAATCAATTGGATTCGTATTGAAATAAATTATTTTAGAAATAATAAATTAGTTCATTTTACGAGCAACTGTAGCCTGAAGTCGAGCTAACCGGCTATTGGTTGGAGCTCGTTTTGGCTCTTCACAGGAAGAGATTTCGTTGTGGGTTGGAAGATGGAACATAATTTACTAGAGAAGACGTTGAGATGTAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGAGTTGGAAGCAATAATTTAATAAATAGAGTGTGGAATATGCACACAGTCGGAATATAGAATCAATTGGATTCGTATTGAAATAAATTATTTTAGAAATAATAAATTAGTTCATTTTACGAGCAACTGTAGCCTGAAGTCGAGMTAACCGGCTATTGGTTGGAGCTCGTTTTGGCTCTTCACAGGAAGAGATTTCGTTGTGGGTTGGAAGATGGAACATAATTTACTAGAGAAGACGTTGAGATGTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25964</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>148837</contig_pos>
        <strand>+</strand>
        <context>MTAACCGGCT[A/G]TTRGTTGKAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTAGTTCATTTTACGAGCAACTGTAGCCTGAAGTCGAGCTAACCGGCT</left_flank>
        <right_flank>TTGGTTGGAGCTCGTTTTGGCTCTTCACAGGAAGAGATTTCGTTGTGGGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGTCTTGGCATTTTGTCAAACTTGCAGTCTGCACCTGAAGTTATTTATTGGGATTTAAAAAGTACAGCGTTCGGTTTAGCAATTGATTCTAACCTTTTGTCTCCTGCCAGTAAACGCCAAAACAGAATTTTCATGACCAAAACGAAAAACGTAATTATCAAACTGTTTTATGTTTGGGCTAAAGAATTTAACAATAATAATTTATTAAATTTCAAAATGCAGCTTTCACATAAATTTGAACCAAAATAGGAGTGAGATCGAAGTGTAGCATCAGTAGTAGATGAGATTTTTTGAATCCATGGATGACGGTTTCAGGGGAGATCCGAGAGAAGTTGTACCAGTTGGAGTTGGAAGCAATAATTTAATAAATAGAGTGTGGAATATGCACACAGTCGGAATATAGAATCAATTGGATTCGTATTGAAATAAATTATTTTAGAAATAATAAATTAGTTCATTTTACGAGCAACTGTAGCCTGAAGTCGAGCTAACCGGCTATTGGTTGGAGCTCGTTTTGGCTCTTCACAGGAAGAGATTTCGTTGTGGGTTGGAAGATGGAACATAATTTACTAGAGAAGACGTTGAGATGTAAAACAACATAATTTTTCAGACGATTCCCCTCCTATTTATACTAGTGATAAGTCTCCTCCCACTTTGATAGTAGTAGATGATTTTAACAAATTGTTTTTTTGTTGTCAAGTTTCGTTTTTAGAGTTGAAACTTCGGATGGAGATTAGGGCTAGAAGAAGGTGAATATCTAACATGTTTGAAGATAAAATGAGATATCTTTTGATTTCAGGGAAACACGGAAAAGTGCAAAAAGTCGCCAACTGAAGTTCCCATCACAAAAAGAACCGGTTTTTACTATCTTCCCTCTTTTGATATCAGTGTCCACGAGAGACAATCATTGTCATTTGTCAAATGTCAAATGTCATTTTGCCACATTGCCACTATTCTTATCAGTTTGTATGTCTTTCTGCTTCTCTGACACTTGCAAA</canonical>
            <polymorphic>GAGGTCTTGGCATTTTGTCAAACTTGCAGTCTGCACCTGAAGTTATTTATTGGGATTTAAAAAGTACAGCGTTCGGTTTAGCAATTGATTCTAACCTTTTGTCTCCTGCCAGTAAACGCCAAAACAGAATTTTCATGACCAAAACGAAAAACGTAATTATCAAACTGTTTTATGTTTGGGCTAAAGAATTTAACAATAATAATTTATTAAATTTCAAAATGCAGCTTTCACATAAATTTGAACCAAAATAGGAGTGAGATCGAAGTGTAGCATCAGTAGTAGATGAGATTTTTTGAATCCATGGATGACGGTTTCAGGGGAGATCCGAGAGAAGTTGTACCAGTTGGAGTTGGAAGCAATAATTTAATAAATAGAGTGTGGAATATGCACACAGTCGGAATATAGAATCAATTGGATTCGTATTGAAATAAATTATTTTAGAAATAATAAATTAGTTCATTTTACGAGCAACTGTAGCCTGAAGTCGAGCTAACCGGCTRTTGGTTGGAGCTCGTTTTGGCTCTTCACAGGAAGAGATTTCGTTGTGGGTTGGAAGATGGAACATAATTTACTAGAGAAGACGTTGAGATGTAAAACAACATAATTTTTCAGACGATTCCCCTCCTATTTATACTAGTGATAAGTCTCCTCCCACTTTGATAGTAGTAGATGATTTTAACAAATTGTTTTTTTGTTGTCAAGTTTCGTTTTTAGAGTTGAAACTTCGGATGGAGATTAGGGCTAGAAGAAGGTGAATATCTAACATGTTTGAAGATAAAATGAGATATCTTTTGATTTCAGGGAAACACGGAAAAGTGCAAAAAGTCGCCAACTGAAGTTCCCATCACAAAAAGAACCGGTTTTTACTATCTTCCCTCTTTTGATATCAGTGTCCACGAGAGACAATCATTGTCATTTGTCAAATGTCAAATGTCATTTTGCCACATTGCCACTATTCTTATCAGTTTGTATGTCTTTCTGCTTCTCTGACACTTGCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGTTGGAAGCAATAATTTAATA</pcr_primer_p1>
		<pcr_primer_p2>TTTTACATCTCAACGTCTTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGAGTTGGAAGCAATAATTTAATAAATAGAGTGTGGAATATGCACACAGTCGGAATATAGAATCAATTGGATTCGTATTGAAATAAATTATTTTAGAAATAATAAATTAGTTCATTTTACGAGCAACTGTAGCCTGAAGTCGAGCTAACCGGCTATTGGTTGGAGCTCGTTTTGGCTCTTCACAGGAAGAGATTTCGTTGTGGGTTGGAAGATGGAACATAATTTACTAGAGAAGACGTTGAGATGTAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGAGTTGGAAGCAATAATTTAATAAATAGAGTGTGGAATATGCACACAGTCGGAATATAGAATCAATTGGATTCGTATTGAAATAAATTATTTTAGAAATAATAAATTAGTTCATTTTACGAGCAACTGTAGCCTGAAGTCGAGCTAACCGGCTRTTGGTTGGAGCTCGTTTTGGCTCTTCACAGGAAGAGATTTCGTTGTGGGTTGGAAGATGGAACATAATTTACTAGAGAAGACGTTGAGATGTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25965</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>148840</contig_pos>
        <strand>+</strand>
        <context>ACCGGCTRTT[A/G]GTTGKAGCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGTTCATTTTACGAGCAACTGTAGCCTGAAGTCGAGCTAACCGGCTATT</left_flank>
        <right_flank>GTTGGAGCTCGTTTTGGCTCTTCACAGGAAGAGATTTCGTTGTGGGTTGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCTTGGCATTTTGTCAAACTTGCAGTCTGCACCTGAAGTTATTTATTGGGATTTAAAAAGTACAGCGTTCGGTTTAGCAATTGATTCTAACCTTTTGTCTCCTGCCAGTAAACGCCAAAACAGAATTTTCATGACCAAAACGAAAAACGTAATTATCAAACTGTTTTATGTTTGGGCTAAAGAATTTAACAATAATAATTTATTAAATTTCAAAATGCAGCTTTCACATAAATTTGAACCAAAATAGGAGTGAGATCGAAGTGTAGCATCAGTAGTAGATGAGATTTTTTGAATCCATGGATGACGGTTTCAGGGGAGATCCGAGAGAAGTTGTACCAGTTGGAGTTGGAAGCAATAATTTAATAAATAGAGTGTGGAATATGCACACAGTCGGAATATAGAATCAATTGGATTCGTATTGAAATAAATTATTTTAGAAATAATAAATTAGTTCATTTTACGAGCAACTGTAGCCTGAAGTCGAGCTAACCGGCTATTGGTTGGAGCTCGTTTTGGCTCTTCACAGGAAGAGATTTCGTTGTGGGTTGGAAGATGGAACATAATTTACTAGAGAAGACGTTGAGATGTAAAACAACATAATTTTTCAGACGATTCCCCTCCTATTTATACTAGTGATAAGTCTCCTCCCACTTTGATAGTAGTAGATGATTTTAACAAATTGTTTTTTTGTTGTCAAGTTTCGTTTTTAGAGTTGAAACTTCGGATGGAGATTAGGGCTAGAAGAAGGTGAATATCTAACATGTTTGAAGATAAAATGAGATATCTTTTGATTTCAGGGAAACACGGAAAAGTGCAAAAAGTCGCCAACTGAAGTTCCCATCACAAAAAGAACCGGTTTTTACTATCTTCCCTCTTTTGATATCAGTGTCCACGAGAGACAATCATTGTCATTTGTCAAATGTCAAATGTCATTTTGCCACATTGCCACTATTCTTATCAGTTTGTATGTCTTTCTGCTTCTCTGACACTTGCAAACTT</canonical>
            <polymorphic>GTCTTGGCATTTTGTCAAACTTGCAGTCTGCACCTGAAGTTATTTATTGGGATTTAAAAAGTACAGCGTTCGGTTTAGCAATTGATTCTAACCTTTTGTCTCCTGCCAGTAAACGCCAAAACAGAATTTTCATGACCAAAACGAAAAACGTAATTATCAAACTGTTTTATGTTTGGGCTAAAGAATTTAACAATAATAATTTATTAAATTTCAAAATGCAGCTTTCACATAAATTTGAACCAAAATAGGAGTGAGATCGAAGTGTAGCATCAGTAGTAGATGAGATTTTTTGAATCCATGGATGACGGTTTCAGGGGAGATCCGAGAGAAGTTGTACCAGTTGGAGTTGGAAGCAATAATTTAATAAATAGAGTGTGGAATATGCACACAGTCGGAATATAGAATCAATTGGATTCGTATTGAAATAAATTATTTTAGAAATAATAAATTAGTTCATTTTACGAGCAACTGTAGCCTGAAGTCGAGCTAACCGGCTATTRGTTGGAGCTCGTTTTGGCTCTTCACAGGAAGAGATTTCGTTGTGGGTTGGAAGATGGAACATAATTTACTAGAGAAGACGTTGAGATGTAAAACAACATAATTTTTCAGACGATTCCCCTCCTATTTATACTAGTGATAAGTCTCCTCCCACTTTGATAGTAGTAGATGATTTTAACAAATTGTTTTTTTGTTGTCAAGTTTCGTTTTTAGAGTTGAAACTTCGGATGGAGATTAGGGCTAGAAGAAGGTGAATATCTAACATGTTTGAAGATAAAATGAGATATCTTTTGATTTCAGGGAAACACGGAAAAGTGCAAAAAGTCGCCAACTGAAGTTCCCATCACAAAAAGAACCGGTTTTTACTATCTTCCCTCTTTTGATATCAGTGTCCACGAGAGACAATCATTGTCATTTGTCAAATGTCAAATGTCATTTTGCCACATTGCCACTATTCTTATCAGTTTGTATGTCTTTCTGCTTCTCTGACACTTGCAAACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAGTTGGAAGCAATAATTTAATA</pcr_primer_p1>
		<pcr_primer_p2>TTTTACATCTCAACGTCTTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGAGTTGGAAGCAATAATTTAATAAATAGAGTGTGGAATATGCACACAGTCGGAATATAGAATCAATTGGATTCGTATTGAAATAAATTATTTTAGAAATAATAAATTAGTTCATTTTACGAGCAACTGTAGCCTGAAGTCGAGCTAACCGGCTATTGGTTGGAGCTCGTTTTGGCTCTTCACAGGAAGAGATTTCGTTGTGGGTTGGAAGATGGAACATAATTTACTAGAGAAGACGTTGAGATGTAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGAGTTGGAAGCAATAATTTAATAAATAGAGTGTGGAATATGCACACAGTCGGAATATAGAATCAATTGGATTCGTATTGAAATAAATTATTTTAGAAATAATAAATTAGTTCATTTTACGAGCAACTGTAGCCTGAAGTCGAGCTAACCGGCTATTRGTTGGAGCTCGTTTTGGCTCTTCACAGGAAGAGATTTCGTTGTGGGTTGGAAGATGGAACATAATTTACTAGAGAAGACGTTGAGATGTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25966</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>148845</contig_pos>
        <strand>+</strand>
        <context>CTRTTRGTTG[G/T]AGCTCGTTTK</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATTTTACGAGCAACTGTAGCCTGAAGTCGAGCTAACCGGCTATTGGTTG</left_flank>
        <right_flank>AGCTCGTTTTGGCTCTTCACAGGAAGAGATTTCGTTGTGGGTTGGAAGAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCATTTTGTCAAACTTGCAGTCTGCACCTGAAGTTATTTATTGGGATTTAAAAAGTACAGCGTTCGGTTTAGCAATTGATTCTAACCTTTTGTCTCCTGCCAGTAAACGCCAAAACAGAATTTTCATGACCAAAACGAAAAACGTAATTATCAAACTGTTTTATGTTTGGGCTAAAGAATTTAACAATAATAATTTATTAAATTTCAAAATGCAGCTTTCACATAAATTTGAACCAAAATAGGAGTGAGATCGAAGTGTAGCATCAGTAGTAGATGAGATTTTTTGAATCCATGGATGACGGTTTCAGGGGAGATCCGAGAGAAGTTGTACCAGTTGGAGTTGGAAGCAATAATTTAATAAATAGAGTGTGGAATATGCACACAGTCGGAATATAGAATCAATTGGATTCGTATTGAAATAAATTATTTTAGAAATAATAAATTAGTTCATTTTACGAGCAACTGTAGCCTGAAGTCGAGCTAACCGGCTATTGGTTGGAGCTCGTTTTGGCTCTTCACAGGAAGAGATTTCGTTGTGGGTTGGAAGATGGAACATAATTTACTAGAGAAGACGTTGAGATGTAAAACAACATAATTTTTCAGACGATTCCCCTCCTATTTATACTAGTGATAAGTCTCCTCCCACTTTGATAGTAGTAGATGATTTTAACAAATTGTTTTTTTGTTGTCAAGTTTCGTTTTTAGAGTTGAAACTTCGGATGGAGATTAGGGCTAGAAGAAGGTGAATATCTAACATGTTTGAAGATAAAATGAGATATCTTTTGATTTCAGGGAAACACGGAAAAGTGCAAAAAGTCGCCAACTGAAGTTCCCATCACAAAAAGAACCGGTTTTTACTATCTTCCCTCTTTTGATATCAGTGTCCACGAGAGACAATCATTGTCATTTGTCAAATGTCAAATGTCATTTTGCCACATTGCCACTATTCTTATCAGTTTGTATGTCTTTCTGCTTCTCTGACACTTGCAAACTTATCAC</canonical>
            <polymorphic>GGCATTTTGTCAAACTTGCAGTCTGCACCTGAAGTTATTTATTGGGATTTAAAAAGTACAGCGTTCGGTTTAGCAATTGATTCTAACCTTTTGTCTCCTGCCAGTAAACGCCAAAACAGAATTTTCATGACCAAAACGAAAAACGTAATTATCAAACTGTTTTATGTTTGGGCTAAAGAATTTAACAATAATAATTTATTAAATTTCAAAATGCAGCTTTCACATAAATTTGAACCAAAATAGGAGTGAGATCGAAGTGTAGCATCAGTAGTAGATGAGATTTTTTGAATCCATGGATGACGGTTTCAGGGGAGATCCGAGAGAAGTTGTACCAGTTGGAGTTGGAAGCAATAATTTAATAAATAGAGTGTGGAATATGCACACAGTCGGAATATAGAATCAATTGGATTCGTATTGAAATAAATTATTTTAGAAATAATAAATTAGTTCATTTTACGAGCAACTGTAGCCTGAAGTCGAGCTAACCGGCTATTGGTTGKAGCTCGTTTTGGCTCTTCACAGGAAGAGATTTCGTTGTGGGTTGGAAGATGGAACATAATTTACTAGAGAAGACGTTGAGATGTAAAACAACATAATTTTTCAGACGATTCCCCTCCTATTTATACTAGTGATAAGTCTCCTCCCACTTTGATAGTAGTAGATGATTTTAACAAATTGTTTTTTTGTTGTCAAGTTTCGTTTTTAGAGTTGAAACTTCGGATGGAGATTAGGGCTAGAAGAAGGTGAATATCTAACATGTTTGAAGATAAAATGAGATATCTTTTGATTTCAGGGAAACACGGAAAAGTGCAAAAAGTCGCCAACTGAAGTTCCCATCACAAAAAGAACCGGTTTTTACTATCTTCCCTCTTTTGATATCAGTGTCCACGAGAGACAATCATTGTCATTTGTCAAATGTCAAATGTCATTTTGCCACATTGCCACTATTCTTATCAGTTTGTATGTCTTTCTGCTTCTCTGACACTTGCAAACTTATCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAGTTGGAAGCAATAATTTAATA</pcr_primer_p1>
		<pcr_primer_p2>TTTTACATCTCAACGTCTTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGAGTTGGAAGCAATAATTTAATAAATAGAGTGTGGAATATGCACACAGTCGGAATATAGAATCAATTGGATTCGTATTGAAATAAATTATTTTAGAAATAATAAATTAGTTCATTTTACGAGCAACTGTAGCCTGAAGTCGAGCTAACCGGCTATTGGTTGGAGCTCGTTTTGGCTCTTCACAGGAAGAGATTTCGTTGTGGGTTGGAAGATGGAACATAATTTACTAGAGAAGACGTTGAGATGTAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGAGTTGGAAGCAATAATTTAATAAATAGAGTGTGGAATATGCACACAGTCGGAATATAGAATCAATTGGATTCGTATTGAAATAAATTATTTTAGAAATAATAAATTAGTTCATTTTACGAGCAACTGTAGCCTGAAGTCGAGCTAACCGGCTATTGGTTGKAGCTCGTTTTGGCTCTTCACAGGAAGAGATTTCGTTGTGGGTTGGAAGATGGAACATAATTTACTAGAGAAGACGTTGAGATGTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25967</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>148855</contig_pos>
        <strand>+</strand>
        <context>KAGCTCGTTT[G/T]GGCTCTTCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCAACTGTAGCCTGAAGTCGAGCTAACCGGCTATTGGTTGGAGCTCGTTT</left_flank>
        <right_flank>GGCTCTTCACAGGAAGAGATTTCGTTGTGGGTTGGAAGATGGAACATAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAACTTGCAGTCTGCACCTGAAGTTATTTATTGGGATTTAAAAAGTACAGCGTTCGGTTTAGCAATTGATTCTAACCTTTTGTCTCCTGCCAGTAAACGCCAAAACAGAATTTTCATGACCAAAACGAAAAACGTAATTATCAAACTGTTTTATGTTTGGGCTAAAGAATTTAACAATAATAATTTATTAAATTTCAAAATGCAGCTTTCACATAAATTTGAACCAAAATAGGAGTGAGATCGAAGTGTAGCATCAGTAGTAGATGAGATTTTTTGAATCCATGGATGACGGTTTCAGGGGAGATCCGAGAGAAGTTGTACCAGTTGGAGTTGGAAGCAATAATTTAATAAATAGAGTGTGGAATATGCACACAGTCGGAATATAGAATCAATTGGATTCGTATTGAAATAAATTATTTTAGAAATAATAAATTAGTTCATTTTACGAGCAACTGTAGCCTGAAGTCGAGCTAACCGGCTATTGGTTGGAGCTCGTTTTGGCTCTTCACAGGAAGAGATTTCGTTGTGGGTTGGAAGATGGAACATAATTTACTAGAGAAGACGTTGAGATGTAAAACAACATAATTTTTCAGACGATTCCCCTCCTATTTATACTAGTGATAAGTCTCCTCCCACTTTGATAGTAGTAGATGATTTTAACAAATTGTTTTTTTGTTGTCAAGTTTCGTTTTTAGAGTTGAAACTTCGGATGGAGATTAGGGCTAGAAGAAGGTGAATATCTAACATGTTTGAAGATAAAATGAGATATCTTTTGATTTCAGGGAAACACGGAAAAGTGCAAAAAGTCGCCAACTGAAGTTCCCATCACAAAAAGAACCGGTTTTTACTATCTTCCCTCTTTTGATATCAGTGTCCACGAGAGACAATCATTGTCATTTGTCAAATGTCAAATGTCATTTTGCCACATTGCCACTATTCTTATCAGTTTGTATGTCTTTCTGCTTCTCTGACACTTGCAAACTTATCACTGTTTCCTCA</canonical>
            <polymorphic>CAAACTTGCAGTCTGCACCTGAAGTTATTTATTGGGATTTAAAAAGTACAGCGTTCGGTTTAGCAATTGATTCTAACCTTTTGTCTCCTGCCAGTAAACGCCAAAACAGAATTTTCATGACCAAAACGAAAAACGTAATTATCAAACTGTTTTATGTTTGGGCTAAAGAATTTAACAATAATAATTTATTAAATTTCAAAATGCAGCTTTCACATAAATTTGAACCAAAATAGGAGTGAGATCGAAGTGTAGCATCAGTAGTAGATGAGATTTTTTGAATCCATGGATGACGGTTTCAGGGGAGATCCGAGAGAAGTTGTACCAGTTGGAGTTGGAAGCAATAATTTAATAAATAGAGTGTGGAATATGCACACAGTCGGAATATAGAATCAATTGGATTCGTATTGAAATAAATTATTTTAGAAATAATAAATTAGTTCATTTTACGAGCAACTGTAGCCTGAAGTCGAGCTAACCGGCTATTGGTTGGAGCTCGTTTKGGCTCTTCACAGGAAGAGATTTCGTTGTGGGTTGGAAGATGGAACATAATTTACTAGAGAAGACGTTGAGATGTAAAACAACATAATTTTTCAGACGATTCCCCTCCTATTTATACTAGTGATAAGTCTCCTCCCACTTTGATAGTAGTAGATGATTTTAACAAATTGTTTTTTTGTTGTCAAGTTTCGTTTTTAGAGTTGAAACTTCGGATGGAGATTAGGGCTAGAAGAAGGTGAATATCTAACATGTTTGAAGATAAAATGAGATATCTTTTGATTTCAGGGAAACACGGAAAAGTGCAAAAAGTCGCCAACTGAAGTTCCCATCACAAAAAGAACCGGTTTTTACTATCTTCCCTCTTTTGATATCAGTGTCCACGAGAGACAATCATTGTCATTTGTCAAATGTCAAATGTCATTTTGCCACATTGCCACTATTCTTATCAGTTTGTATGTCTTTCTGCTTCTCTGACACTTGCAAACTTATCACTGTTTCCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGTTGGAAGCAATAATTTAATA</pcr_primer_p1>
		<pcr_primer_p2>TTTTACATCTCAACGTCTTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGAGTTGGAAGCAATAATTTAATAAATAGAGTGTGGAATATGCACACAGTCGGAATATAGAATCAATTGGATTCGTATTGAAATAAATTATTTTAGAAATAATAAATTAGTTCATTTTACGAGCAACTGTAGCCTGAAGTCGAGCTAACCGGCTATTGGTTGGAGCTCGTTTTGGCTCTTCACAGGAAGAGATTTCGTTGTGGGTTGGAAGATGGAACATAATTTACTAGAGAAGACGTTGAGATGTAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGAGTTGGAAGCAATAATTTAATAAATAGAGTGTGGAATATGCACACAGTCGGAATATAGAATCAATTGGATTCGTATTGAAATAAATTATTTTAGAAATAATAAATTAGTTCATTTTACGAGCAACTGTAGCCTGAAGTCGAGCTAACCGGCTATTGGTTGGAGCTCGTTTKGGCTCTTCACAGGAAGAGATTTCGTTGTGGGTTGGAAGATGGAACATAATTTACTAGAGAAGACGTTGAGATGTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25968</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>148959</contig_pos>
        <strand>+</strand>
        <context>GACGATTCCC[C/G]TCCTATTTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTAGAGAAGACGTTGAGATGTAAAACAACATAATTTTTCAGACGATTCCC</left_flank>
        <right_flank>TCCTATTTATACTAGTGATAAGTCTCCTCCCACTTTGATAGTAGTAGATG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAGAATTTTCATGACCAAAACGAAAAACGTAATTATCAAACTGTTTTATGTTTGGGCTAAAGAATTTAACAATAATAATTTATTAAATTTCAAAATGCAGCTTTCACATAAATTTGAACCAAAATAGGAGTGAGATCGAAGTGTAGCATCAGTAGTAGATGAGATTTTTTGAATCCATGGATGACGGTTTCAGGGGAGATCCGAGAGAAGTTGTACCAGTTGGAGTTGGAAGCAATAATTTAATAAATAGAGTGTGGAATATGCACACAGTCGGAATATAGAATCAATTGGATTCGTATTGAAATAAATTATTTTAGAAATAATAAATTAGTTCATTTTACGAGCAACTGTAGCCTGAAGTCGAGCTAACCGGCTATTGGTTGGAGCTCGTTTTGGCTCTTCACAGGAAGAGATTTCGTTGTGGGTTGGAAGATGGAACATAATTTACTAGAGAAGACGTTGAGATGTAAAACAACATAATTTTTCAGACGATTCCCCTCCTATTTATACTAGTGATAAGTCTCCTCCCACTTTGATAGTAGTAGATGATTTTAACAAATTGTTTTTTTGTTGTCAAGTTTCGTTTTTAGAGTTGAAACTTCGGATGGAGATTAGGGCTAGAAGAAGGTGAATATCTAACATGTTTGAAGATAAAATGAGATATCTTTTGATTTCAGGGAAACACGGAAAAGTGCAAAAAGTCGCCAACTGAAGTTCCCATCACAAAAAGAACCGGTTTTTACTATCTTCCCTCTTTTGATATCAGTGTCCACGAGAGACAATCATTGTCATTTGTCAAATGTCAAATGTCATTTTGCCACATTGCCACTATTCTTATCAGTTTGTATGTCTTTCTGCTTCTCTGACACTTGCAAACTTATCACTGTTTCCTCAATTTTGCTCTTGAACTTTCTAGAGTGATCTCAGGAATAACTATGATGTTTCACGGTTATGGTTTCTGAATCATGGTAAATAAAATAATTTTTCCAGTGGTCCTC</canonical>
            <polymorphic>AACAGAATTTTCATGACCAAAACGAAAAACGTAATTATCAAACTGTTTTATGTTTGGGCTAAAGAATTTAACAATAATAATTTATTAAATTTCAAAATGCAGCTTTCACATAAATTTGAACCAAAATAGGAGTGAGATCGAAGTGTAGCATCAGTAGTAGATGAGATTTTTTGAATCCATGGATGACGGTTTCAGGGGAGATCCGAGAGAAGTTGTACCAGTTGGAGTTGGAAGCAATAATTTAATAAATAGAGTGTGGAATATGCACACAGTCGGAATATAGAATCAATTGGATTCGTATTGAAATAAATTATTTTAGAAATAATAAATTAGTTCATTTTACGAGCAACTGTAGCCTGAAGTCGAGCTAACCGGCTATTGGTTGGAGCTCGTTTTGGCTCTTCACAGGAAGAGATTTCGTTGTGGGTTGGAAGATGGAACATAATTTACTAGAGAAGACGTTGAGATGTAAAACAACATAATTTTTCAGACGATTCCCSTCCTATTTATACTAGTGATAAGTCTCCTCCCACTTTGATAGTAGTAGATGATTTTAACAAATTGTTTTTTTGTTGTCAAGTTTCGTTTTTAGAGTTGAAACTTCGGATGGAGATTAGGGCTAGAAGAAGGTGAATATCTAACATGTTTGAAGATAAAATGAGATATCTTTTGATTTCAGGGAAACACGGAAAAGTGCAAAAAGTCGCCAACTGAAGTTCCCATCACAAAAAGAACCGGTTTTTACTATCTTCCCTCTTTTGATATCAGTGTCCACGAGAGACAATCATTGTCATTTGTCAAATGTCAAATGTCATTTTGCCACATTGCCACTATTCTTATCAGTTTGTATGTCTTTCTGCTTCTCTGACACTTGCAAACTTATCACTGTTTCCTCAATTTTGCTCTTGAACTTTCTAGAGTGATCTCAGGAATAACTATGATGTTTCACGGTTATGGTTTCTGAATCATGGTAAATAAAATAATTTTTCCAGTGGTCCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCAACTGTAGCCTGAAGTC</pcr_primer_p1>
		<pcr_primer_p2>CTCTAAAAACGAAACTTGACAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCAACTGTAGCCTGAAGTCGAGCTAACCGGCTATTGGTTGGAGCTCGTTTTGGCTCTTCACAGGAAGAGATTTCGTTGTGGGTTGGAAGATGGAACATAATTTACTAGAGAAGACGTTGAGATGTAAAACAACATAATTTTTCAGACGATTCCCCTCCTATTTATACTAGTGATAAGTCTCCTCCCACTTTGATAGTAGTAGATGATTTTAACAAATTGTTTTTTTGTTGTCAAGTTTCGTTTTTAGAG</canonical_amplicon>
		<polymorphic_amplicon>AGCAACTGTAGCCTGAAGTCGAGCTAACCGGCTATTGGTTGGAGCTCGTTTTGGCTCTTCACAGGAAGAGATTTCGTTGTGGGTTGGAAGATGGAACATAATTTACTAGAGAAGACGTTGAGATGTAAAACAACATAATTTTTCAGACGATTCCCSTCCTATTTATACTAGTGATAAGTCTCCTCCCACTTTGATAGTAGTAGATGATTTTAACAAATTGTTTTTTTGTTGTCAAGTTTCGTTTTTAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25969</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>150565</contig_pos>
        <strand>-</strand>
        <context>TAGCCGGTTA[A/C]CTCGACTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATCTCTTCCTGTGAAGAGCCAAAACGAGCTCCAACTAATAGCCGGTTA</left_flank>
        <right_flank>CTCGACTTCAGGCTACAGTTGCTCGTAAAATGAACTAATTTATTATTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAACTTTAACATTTTATGATCACAGAAGGACATACAAACTGATAAGAATAGTGGTAATGTGGCAAAGTGACACTTGACAAATGACAATGGTTGTCTCTCGTTTAAACTGATACAAAAAGAGAGAAGATAGTAAAAACCGGTTTTTTGTCATGAGAACTTCAGTTGGCAACATTTTGCACTTTTTTGGTTTTCCGGAGATCGAGATATTCCTAAACTATACTATTAGATGTTCTCCTTCTTCTTCTAGCCCTAATCTCCATCCGAAGTTTGAACTCTAAAAACGAAACTTGAAAACAAAAAAACAATTTGTTAAAATCATTTACTACTATCAAAGTGGGAGGAGACTTATCACTACTATAAATAGGACGGGAATCGTCTGAAAAATTATGTTGTTTTACATCTCAACGTCTTCTATTAAATTATGATACATCTTCCAATTTACAACGAAATCTCTTCCTGTGAAGAGCCAAAACGAGCTCCAACTAATAGCCGGTTAGCTCGACTTCAGGCTACAGTTGCTCGTAAAATGAACTAATTTATTATTTCTGAAATAATTTATTTCAATACGAATCCAATTGATTCTATATTCCGACTGTGTGCATATTCCACACTCTATTTATTAAATTATTGCTTCCAACTCCAACTGGTACAACTTCTCTCGGATCTCCCCTGAAACCGTCATCCATGGATTCAAAAAAATCTCATCTACTACTGATGCTACACTTCGATCTCACTCTCATTTTGGTTCAAATTTATGTGAAAGCTGCATTTTGAAATTTAATAAATTATTATTGTGAAAATCTTTAGCCTTTGCATGAAATATAGAACAGTTTGATAAGAATTATGGAAAGTCAATTTTATTTTTTTTTGGCAAAAGACTAGAGATTGAAATCAGATGCTAAACCGAACAATGTACTTTTAAATCTCAATAAATAACTACAGATGCAGACTGCAAGTTTGACAAAATTCCAAGACCTCTAGTGACATTTGACAATAA</canonical>
            <polymorphic>TTTGAACTTTAACATTTTATGATCACAGAAGGACATACAAACTGATAAGAATAGTGGTAATGTGGCAAAGTGACACTTGACAAATGACAATGGTTGTCTCTCGTTTAAACTGATACAAAAAGAGAGAAGATAGTAAAAACCGGTTTTTTGTCATGAGAACTTCAGTTGGCAACATTTTGCACTTTTTTGGTTTTCCGGAGATCGAGATATTCCTAAACTATACTATTAGATGTTCTCCTTCTTCTTCTAGCCCTAATCTCCATCCGAAGTTTGAACTCTAAAAACGAAACTTGAAAACAAAAAAACAATTTGTTAAAATCATTTACTACTATCAAAGTGGGAGGAGACTTATCACTACTATAAATAGGACGGGAATCGTCTGAAAAATTATGTTGTTTTACATCTCAACGTCTTCTATTAAATTATGATACATCTTCCAATTTACAACGAAATCTCTTCCTGTGAAGAGCCAAAACGAGCTCCAACTAATAGCCGGTTAMCTCGACTTCAGGCTACAGTTGCTCGTAAAATGAACTAATTTATTATTTCTGAAATAATTTATTTCAATACGAATCCAATTGATTCTATATTCCGACTGTGTGCATATTCCACACTCTATTTATTAAATTATTGCTTCCAACTCCAACTGGTACAACTTCTCTCGGATCTCCCCTGAAACCGTCATCCATGGATTCAAAAAAATCTCATCTACTACTGATGCTACACTTCGATCTCACTCTCATTTTGGTTCAAATTTATGTGAAAGCTGCATTTTGAAATTTAATAAATTATTATTGTGAAAATCTTTAGCCTTTGCATGAAATATAGAACAGTTTGATAAGAATTATGGAAAGTCAATTTTATTTTTTTTTGGCAAAAGACTAGAGATTGAAATCAGATGCTAAACCGAACAATGTACTTTTAAATCTCAATAAATAACTACAGATGCAGACTGCAAGTTTGACAAAATTCCAAGACCTCTAGTGACATTTGACAATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>479 266 234 21</canonical_bands>
                <polymorphic_bands>479 287 234</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>254 250 219 190 44 13 12 10 8</canonical_bands>
                <polymorphic_bands>254 250 219 190 44 20 13 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCAAAGTGGGAGGAGACTTAT</pcr_primer_p1>
		<pcr_primer_p2>AATTGGATTCGTATTGAAATAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATCAAAGTGGGAGGAGACTTATCACTACTATAAATAGGACGGGAATCGTCTGAAAAATTATGTTGTTTTACATCTCAACGTCTTCTATTAAATTATGATACATCTTCCAATTTACAACGAAATCTCTTCCTGTGAAGAGCCAAAACGAGCTCCAACTAATAGCCGGTTAGCTCGACTTCAGGCTACAGTTGCTCGTAAAATGAACTAATTTATTATTTCTGAAATAATTTATTTCAATACGAATCCAATT</canonical_amplicon>
		<polymorphic_amplicon>TATCAAAGTGGGAGGAGACTTATCACTACTATAAATAGGACGGGAATCGTCTGAAAAATTATGTTGTTTTACATCTCAACGTCTTCTATTAAATTATGATACATCTTCCAATTTACAACGAAATCTCTTCCTGTGAAGAGCCAAAACGAGCTCCAACTAATAGCCGGTTAMCTCGACTTCAGGCTACAGTTGCTCGTAAAATGAACTAATTTATTATTTCTGAAATAATTTATTTCAATACGAATCCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25970</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>162416</contig_pos>
        <strand>+</strand>
        <context>CCCATTCTTT[A/T]TTTTCTTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGACACGTTCTCTTATATGGTTCTAAAGTACCTCCGGTGGCCCATTCTTT</left_flank>
        <right_flank>TTTTCTTTCTAAAATTTTTAATCGGAAAATTCGGCGAGTTCGTGTTCGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAGAAATGATAAGAAGGTGATAAAGGTTTGCACAGGGGTGTTTTCAACCGAAAAATAAACAAAAGATATGCTTCCGAAAAGGTATGTACGATCTATGTGTCATCTGACCATATGACCCTGAACTGGTCTCCATTTCTCTCGGGGGAACTTTTTTTGGATAGTTTTTTTAGGATAGCCAGACAATTTGGAGTCTTGTTTAGGTGCTTAGCAGATTCGATAAGTCGTTTTTCGGGTTCGACAAAGTTTGAGATGTTTATACTTGCAATACTTGATGAATCAATTTTTTGTTTACTATCATTTCTACAAATTTTACGAACGTTGTCTAATTACGTTGGATCTCTAGTTTCTGCCAATGGGAACGAAGAGAAACATTTTTAGATGGGGGTTTCAGTGGATAAGGTCTAGATGTCCATTTTGAGATCAGTTGCCGTGAAACCTATATCAGAAGGACACGTTCTCTTATATGGTTCTAAAGTACCTCCGGTGGCCCATTCTTTTTTTTCTTTCTAAAATTTTTAATCGGAAAATTCGGCGAGTTCGTGTTCGAAATTTCGCCGAAATTGATCAAGTTATCAAAGGCCCTTCTATCCTTCTATTCAAGCGGCCCTTCTAATACAGGTTTTACGGTATCTCAACGTTTTAAACCAAAATAAACATTTATAAAAAAGGTCTTCTGACTATTGCGAAAACTAAACTATTTTAAACATAAAAGCTTCAAAAGATTGGGAAGGCTTTTTCAGGTCCCAATTTACAAAGTTCAAGCTTTTATATGAGCATTCTGGAAATTTGAGATCAGCAAGTATAGACCGGAGTTTTCCGGAAACACTTTTTGGAGATACGGAATCTGGAATACAGAATCCGAGAAAAATACGGATTGAGAAATTCAGATGTCTCTGGAATATATTCGCACTGAACTGATGAGATCCTAATTTCTGAGTTAGATTATTCTATTCCAAACAAGAGATCAGAAACTGTTGAACAGTTCCATCTGGTTCAGA</canonical>
            <polymorphic>GAGAGAAATGATAAGAAGGTGATAAAGGTTTGCACAGGGGTGTTTTCAACCGAAAAATAAACAAAAGATATGCTTCCGAAAAGGTATGTACGATCTATGTGTCATCTGACCATATGACCCTGAACTGGTCTCCATTTCTCTCGGGGGAACTTTTTTTGGATAGTTTTTTTAGGATAGCCAGACAATTTGGAGTCTTGTTTAGGTGCTTAGCAGATTCGATAAGTCGTTTTTCGGGTTCGACAAAGTTTGAGATGTTTATACTTGCAATACTTGATGAATCAATTTTTTGTTTACTATCATTTCTACAAATTTTACGAACGTTGTCTAATTACGTTGGATCTCTAGTTTCTGCCAATGGGAACGAAGAGAAACATTTTTAGATGGGGGTTTCAGTGGATAAGGTCTAGATGTCCATTTTGAGATCAGTTGCCGTGAAACCTATATCAGAAGGACACGTTCTCTTATATGGTTCTAAAGTACCTCCGGTGGCCCATTCTTTWTTTTCTTTCTAAAATTTTTAATCGGAAAATTCGGCGAGTTCGTGTTCGAAATTTCGCCGAAATTGATCAAGTTATCAAAGGCCCTTCTATCCTTCTATTCAAGCGGCCCTTCTAATACAGGTTTTACGGTATCTCAACGTTTTAAACCAAAATAAACATTTATAAAAAAGGTCTTCTGACTATTGCGAAAACTAAACTATTTTAAACATAAAAGCTTCAAAAGATTGGGAAGGCTTTTTCAGGTCCCAATTTACAAAGTTCAAGCTTTTATATGAGCATTCTGGAAATTTGAGATCAGCAAGTATAGACCGGAGTTTTCCGGAAACACTTTTTGGAGATACGGAATCTGGAATACAGAATCCGAGAAAAATACGGATTGAGAAATTCAGATGTCTCTGGAATATATTCGCACTGAACTGATGAGATCCTAATTTCTGAGTTAGATTATTCTATTCCAAACAAGAGATCAGAAACTGTTGAACAGTTCCATCTGGTTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGACACGTTCTCTTATATGGT</pcr_primer_p1>
		<pcr_primer_p2>GTTTAGTTTTCGCAATAGTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGGACACGTTCTCTTATATGGTTCTAAAGTACCTCCGGTGGCCCATTCTTTTTTTTCTTTCTAAAATTTTTAATCGGAAAATTCGGCGAGTTCGTGTTCGAAATTTCGCCGAAATTGATCAAGTTATCAAAGGCCCTTCTATCCTTCTATTCAAGCGGCCCTTCTAATACAGGTTTTACGGTATCTCAACGTTTTAAACCAAAATAAACATTTATAAAAAAGGTCTTCTGACTATTGCGAAAACTAAAC</canonical_amplicon>
		<polymorphic_amplicon>AAGGACACGTTCTCTTATATGGTTCTAAAGTACCTCCGGTGGCCCATTCTTTWTTTTCTTTCTAAAATTTTTAATCGGAAAATTCGGCGAGTTCGTGTTCGAAATTTCGCCGAAATTGATCAAGTTATCAAAGGCCCTTCTATCCTTCTATTCAAGCGGCCCTTCTAATACAGGTTTTACGGTATCTCAACGTTTTAAACCAAAATAAACATTTATAAAAAAGGTCTTCTGACTATTGCGAAAACTAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25971</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>202870</contig_pos>
        <strand>+</strand>
        <context>TTTACTCACA[G/T]AGCTGTGCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GACTACTGTAGCTAGGAGAAATTTCGAAATCGTGAGAAGTTTTACTCACA</left_flank>
        <right_flank>AGCTGTGCAGTTTGGAAATTCGATCAAAAATTATGATTTTGCAAGAAATT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGAATTACGGAATTCGATAAAGAAAATAAAAACACCGGGGACTCGGTATTCAAATTGAATGGCCTGATTTTATTTATTTTTCGCTGTATTATGTTCTAGATTGAAATCAGAATCGGTAGACACCAATTAAACGAAAGGAGATAAGGCTTGAGCCAAACAGACACAAGGAGGAAACAATCCCATTTTTCAGAACCATAGATTTTTCAACTGATAGAAGAAAAAGAAGGCGTGTATGACGTGACGTGGAAGATGGTGTAAAATGAACAACGAAATCTGAAGAGAAAAGAAAAGGGCGGAGCTTGGAGAGGGCGTGGGGTTAATGGAAACTGGTGGGAGGAGGACCCATAAAAATTAAAGGAATCGTACTATTTGGATGAGGTTTGAGGGGGCAGCAAATGAGTTGAAAATGGGTTTTGTGGTTTGGATTGTTGCTCATAGAAAATTGCACGACTACTGTAGCTAGGAGAAATTTCGAAATCGTGAGAAGTTTTACTCACATAGCTGTGCAGTTTGGAAATTCGATCAAAAATTATGATTTTGCAAGAAATTTCAGAAATATTCCCATACCCTTTCAGGACTATTTTGAAGATTGATAAGATTTTGAACGAAGTGTGGGTGATTTTAGGGTATGTGAAATGTATTATTCCGGTACCAAAAAATTGGAACCGTGGCAGAGAAACATCGTCGGCCGTGGCCGAAGGTCCCACAAGGAAATCTACCGTAACTTAAAAATACATTTATTTTCGTTAATTGTTTTCTCAATTTTCGTGCGTTTTCCCTCATTTTTAGAAAAATTGACCGAAAACTCACTAAAATCGAGATACAATGAAACCTGTAATAGAAGGGCCCCTCACACTTTCAATTTTAAGCTCAATTACCTCGGTTCCTGTGAAAGTCATCAAAAATGTGTCCACTGATAAAATGTTTTTCATAATATCACCAGCATTTTATCAATTGACAAAATTTCGATGGCTTTTATAGAAACCGAGATAATAGGGC</canonical>
            <polymorphic>CGGAATTACGGAATTCGATAAAGAAAATAAAAACACCGGGGACTCGGTATTCAAATTGAATGGCCTGATTTTATTTATTTTTCGCTGTATTATGTTCTAGATTGAAATCAGAATCGGTAGACACCAATTAAACGAAAGGAGATAAGGCTTGAGCCAAACAGACACAAGGAGGAAACAATCCCATTTTTCAGAACCATAGATTTTTCAACTGATAGAAGAAAAAGAAGGCGTGTATGACGTGACGTGGAAGATGGTGTAAAATGAACAACGAAATCTGAAGAGAAAAGAAAAGGGCGGAGCTTGGAGAGGGCGTGGGGTTAATGGAAACTGGTGGGAGGAGGACCCATAAAAATTAAAGGAATCGTACTATTTGGATGAGGTTTGAGGGGGCAGCAAATGAGTTGAAAATGGGTTTTGTGGTTTGGATTGTTGCTCATAGAAAATTGCACGACTACTGTAGCTAGGAGAAATTTCGAAATCGTGAGAAGTTTTACTCACAKAGCTGTGCAGTTTGGAAATTCGATCAAAAATTATGATTTTGCAAGAAATTTCAGAAATATTCCCATACCCTTTCAGGACTATTTTGAAGATTGATAAGATTTTGAACGAAGTGTGGGTGATTTTAGGGTATGTGAAATGTATTATTCCGGTACCAAAAAATTGGAACCGTGGCAGAGAAACATCGTCGGCCGTGGCCGAAGGTCCCACAAGGAAATCTACCGTAACTTAAAAATACATTTATTTTCGTTAATTGTTTTCTCAATTTTCGTGCGTTTTCCCTCATTTTTAGAAAAATTGACCGAAAACTCACTAAAATCGAGATACAATGAAACCTGTAATAGAAGGGCCCCTCACACTTTCAATTTTAAGCTCAATTACCTCGGTTCCTGTGAAAGTCATCAAAAATGTGTCCACTGATAAAATGTTTTTCATAATATCACCAGCATTTTATCAATTGACAAAATTTCGATGGCTTTTATAGAAACCGAGATAATAGGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATAAAAATTAAAGGAATCGTA</pcr_primer_p1>
		<pcr_primer_p2>CAATCTTCAAAATAGTCCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCATAAAAATTAAAGGAATCGTACTATTTGGATGAGGTTTGAGGGGGCAGCAAATGAGTTGAAAATGGGTTTTGTGGTTTGGATTGTTGCTCATAGAAAATTGCACGACTACTGTAGCTAGGAGAAATTTCGAAATCGTGAGAAGTTTTACTCACATAGCTGTGCAGTTTGGAAATTCGATCAAAAATTATGATTTTGCAAGAAATTTCAGAAATATTCCCATACCCTTTCAGGACTATTTTGAAGATTG</canonical_amplicon>
		<polymorphic_amplicon>CCATAAAAATTAAAGGAATCGTACTATTTGGATGAGGTTTGAGGGGGCAGCAAATGAGTTGAAAATGGGTTTTGTGGTTTGGATTGTTGCTCATAGAAAATTGCACGACTACTGTAGCTAGGAGAAATTTCGAAATCGTGAGAAGTTTTACTCACAKAGCTGTGCAGTTTGGAAATTCGATCAAAAATTATGATTTTGCAAGAAATTTCAGAAATATTCCCATACCCTTTCAGGACTATTTTGAAGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25972</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>203196</contig_pos>
        <strand></strand>
        <context>atcgagatac[A/C]atgaaacctg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCCCTCATTTTTAGAAAAATTGACCGAAAACTCACTAAAATCGAGATAC</left_flank>
        <right_flank>ATGAAACCTGTAATAGAAGGGCCCCTCACACTTTCAATTTTAAGCTCAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGGTGGGAGGAGGACCCATAAAAATTAAAGGAATCGTACTATTTGGATGAGGTTTGAGGGGGCAGCAAATGAGTTGAAAATGGGTTTTGTGGTTTGGATTGTTGCTCATAGAAAATTGCACGACTACTGTAGCTAGGAGAAATTTCGAAATCGTGAGAAGTTTTACTCACATAGCTGTGCAGTTTGGAAATTCGATCAAAAATTATGATTTTGCAAGAAATTTCAGAAATATTCCCATACCCTTTCAGGACTATTTTGAAGATTGATAAGATTTTGAACGAAGTGTGGGTGATTTTAGGGTATGTGAAATGTATTATTCCGGTACCAAAAAATTGGAACCGTGGCAGAGAAACATCGTCGGCCGTGGCCGAAGGTCCCACAAGGAAATCTACCGTAACTTAAAAATACATTTATTTTCGTTAATTGTTTTCTCAATTTTCGTGCGTTTTCCCTCATTTTTAGAAAAATTGACCGAAAACTCACTAAAATCGAGATACAATGAAACCTGTAATAGAAGGGCCCCTCACACTTTCAATTTTAAGCTCAATTACCTCGGTTCCTGTGAAAGTCATCAAAAATGTGTCCACTGATAAAATGTTTTTCATAATATCACCAGCATTTTATCAATTGACAAAATTTCGATGGCTTTTATAGAAACCGAGATAATAGGGCCCTTCTATCTCAGTTTTACGGTAATCTCAGAAAATATAGTAGGTTACGGTAGCTGTCGTTGTGGGACCTTCGGCCACAGCTTCTATTTTTTGTTCCAGAATAATTGAAAAATTGCCAATCTACTGAAAAATCTAAGGCCGTGCACTCAAGTGCCATATGGGAAAAATTAATATTTTCTAAGTAATTTCAATTTCCTATAAATGAATTACTTATAACTTATTCACTGAATGCCCTAAAAACTACACTAGATTCAAACTTCGTTCAAACCGTCACCTTCGAGCCAATGTATCTCAATTTCTGTAAATGATACCAAAAACTGATTAACT</canonical>
            <polymorphic>ACTGGTGGGAGGAGGACCCATAAAAATTAAAGGAATCGTACTATTTGGATGAGGTTTGAGGGGGCAGCAAATGAGTTGAAAATGGGTTTTGTGGTTTGGATTGTTGCTCATAGAAAATTGCACGACTACTGTAGCTAGGAGAAATTTCGAAATCGTGAGAAGTTTTACTCACATAGCTGTGCAGTTTGGAAATTCGATCAAAAATTATGATTTTGCAAGAAATTTCAGAAATATTCCCATACCCTTTCAGGACTATTTTGAAGATTGATAAGATTTTGAACGAAGTGTGGGTGATTTTAGGGTATGTGAAATGTATTATTCCGGTACCAAAAAATTGGAACCGTGGCAGAGAAACATCGTCGGCCGTGGCCGAAGGTCCCACAAGGAAATCTACCGTAACTTAAAAATACATTTATTTTCGTTAATTGTTTTCTCAATTTTCGTGCGTTTTCCCTCATTTTTAGAAAAATTGACCGAAAACTCACTAAAATCGAGATACMATGAAACCTGTAATAGAAGGGCCCCTCACACTTTCAATTTTAAGCTCAATTACCTCGGTTCCTGTGAAAGTCATCAAAAATGTGTCCACTGATAAAATGTTTTTCATAATATCACCAGCATTTTATCAATTGACAAAATTTCGATGGCTTTTATAGAAACCGAGATAATAGGGCCCTTCTATCTCAGTTTTACGGTAATCTCAGAAAATATAGTAGGTTACGGTAGCTGTCGTTGTGGGACCTTCGGCCACAGCTTCTATTTTTTGTTCCAGAATAATTGAAAAATTGCCAATCTACTGAAAAATCTAAGGCCGTGCACTCAAGTGCCATATGGGAAAAATTAATATTTTCTAAGTAATTTCAATTTCCTATAAATGAATTACTTATAACTTATTCACTGAATGCCCTAAAAACTACACTAGATTCAAACTTCGTTCAAACCGTCACCTTCGAGCCAATGTATCTCAATTTCTGTAAATGATACCAAAAACTGATTAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATTTTAGGGTATGTGAAATGT</pcr_primer_p1>
		<pcr_primer_p2>CAATTTTTCAATTATTCTGGAAC</pcr_primer_p2>
		<pcr_amplicon_size>497</pcr_amplicon_size>
		<canonical_amplicon>TGATTTTAGGGTATGTGAAATGTATTATTCCGGTACCAAAAAATTGGAACCGTGGCAGAGAAACATCGTCGGCCGTGGCCGAAGGTCCCACAAGGAAATCTACCGTAACTTAAAAATACATTTATTTTCGTTAATTGTTTTCTCAATTTTCGTGCGTTTTCCCTCATTTTTAGAAAAATTGACCGAAAACTCACTAAAATCGAGATACAATGAAACCTGTAATAGAAGGGCCCCTCACACTTTCAATTTTAAGCTCAATTACCTCGGTTCCTGTGAAAGTCATCAAAAATGTGTCCACTGATAAAATGTTTTTCATAATATCACCAGCATTTTATCAATTGACAAAATTTCGATGGCTTTTATAGAAACCGAGATAATAGGGCCCTTCTATCTCAGTTTTACGGTAATCTCAGAAAATATAGTAGGTTACGGTAGCTGTCGTTGTGGGACCTTCGGCCACAGCTTCTATTTTTTGTTCCAGAATAATTGAAAAATTG</canonical_amplicon>
		<polymorphic_amplicon>TGATTTTAGGGTATGTGAAATGTATTATTCCGGTACCAAAAAATTGGAACCGTGGCAGAGAAACATCGTCGGCCGTGGCCGAAGGTCCCACAAGGAAATCTACCGTAACTTAAAAATACATTTATTTTCGTTAATTGTTTTCTCAATTTTCGTGCGTTTTCCCTCATTTTTAGAAAAATTGACCGAAAACTCACTAAAATCGAGATACMATGAAACCTGTAATAGAAGGGCCCCTCACACTTTCAATTTTAAGCTCAATTACCTCGGTTCCTGTGAAAGTCATCAAAAATGTGTCCACTGATAAAATGTTTTTCATAATATCACCAGCATTTTATCAATTGACAAAATTTCGATGGCTTTTATAGAAACCGAGATAATAGGGCCCTTCTATCTCAGTTTTACGGTAATCTCAGAAAATATAGTAGGTTACGGTAGCTGTCGTTGTGGGACCTTCGGCCACAGCTTCTATTTTTTGTTCCAGAATAATTGAAAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25973</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>203219</contig_pos>
        <strand></strand>
        <context>atagaagggc[C/A]cctcacactt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ACCGAAAACTCACTAAAATCGAGATACAATGAAACCTGTAATAGAAGGGC</left_flank>
        <right_flank>CCTCACACTTTCAATTTTAAGCTCAATTACCTCGGTTCCTGTGAAAGTCA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTAAAGGAATCGTACTATTTGGATGAGGTTTGAGGGGGCAGCAAATGAGTTGAAAATGGGTTTTGTGGTTTGGATTGTTGCTCATAGAAAATTGCACGACTACTGTAGCTAGGAGAAATTTCGAAATCGTGAGAAGTTTTACTCACATAGCTGTGCAGTTTGGAAATTCGATCAAAAATTATGATTTTGCAAGAAATTTCAGAAATATTCCCATACCCTTTCAGGACTATTTTGAAGATTGATAAGATTTTGAACGAAGTGTGGGTGATTTTAGGGTATGTGAAATGTATTATTCCGGTACCAAAAAATTGGAACCGTGGCAGAGAAACATCGTCGGCCGTGGCCGAAGGTCCCACAAGGAAATCTACCGTAACTTAAAAATACATTTATTTTCGTTAATTGTTTTCTCAATTTTCGTGCGTTTTCCCTCATTTTTAGAAAAATTGACCGAAAACTCACTAAAATCGAGATACAATGAAACCTGTAATAGAAGGGCCCCTCACACTTTCAATTTTAAGCTCAATTACCTCGGTTCCTGTGAAAGTCATCAAAAATGTGTCCACTGATAAAATGTTTTTCATAATATCACCAGCATTTTATCAATTGACAAAATTTCGATGGCTTTTATAGAAACCGAGATAATAGGGCCCTTCTATCTCAGTTTTACGGTAATCTCAGAAAATATAGTAGGTTACGGTAGCTGTCGTTGTGGGACCTTCGGCCACAGCTTCTATTTTTTGTTCCAGAATAATTGAAAAATTGCCAATCTACTGAAAAATCTAAGGCCGTGCACTCAAGTGCCATATGGGAAAAATTAATATTTTCTAAGTAATTTCAATTTCCTATAAATGAATTACTTATAACTTATTCACTGAATGCCCTAAAAACTACACTAGATTCAAACTTCGTTCAAACCGTCACCTTCGAGCCAATGTATCTCAATTTCTGTAAATGATACCAAAAACTGATTAACTGATAAAATGTCATTAGAGTTTAC</canonical>
            <polymorphic>AAATTAAAGGAATCGTACTATTTGGATGAGGTTTGAGGGGGCAGCAAATGAGTTGAAAATGGGTTTTGTGGTTTGGATTGTTGCTCATAGAAAATTGCACGACTACTGTAGCTAGGAGAAATTTCGAAATCGTGAGAAGTTTTACTCACATAGCTGTGCAGTTTGGAAATTCGATCAAAAATTATGATTTTGCAAGAAATTTCAGAAATATTCCCATACCCTTTCAGGACTATTTTGAAGATTGATAAGATTTTGAACGAAGTGTGGGTGATTTTAGGGTATGTGAAATGTATTATTCCGGTACCAAAAAATTGGAACCGTGGCAGAGAAACATCGTCGGCCGTGGCCGAAGGTCCCACAAGGAAATCTACCGTAACTTAAAAATACATTTATTTTCGTTAATTGTTTTCTCAATTTTCGTGCGTTTTCCCTCATTTTTAGAAAAATTGACCGAAAACTCACTAAAATCGAGATACAATGAAACCTGTAATAGAAGGGCMCCTCACACTTTCAATTTTAAGCTCAATTACCTCGGTTCCTGTGAAAGTCATCAAAAATGTGTCCACTGATAAAATGTTTTTCATAATATCACCAGCATTTTATCAATTGACAAAATTTCGATGGCTTTTATAGAAACCGAGATAATAGGGCCCTTCTATCTCAGTTTTACGGTAATCTCAGAAAATATAGTAGGTTACGGTAGCTGTCGTTGTGGGACCTTCGGCCACAGCTTCTATTTTTTGTTCCAGAATAATTGAAAAATTGCCAATCTACTGAAAAATCTAAGGCCGTGCACTCAAGTGCCATATGGGAAAAATTAATATTTTCTAAGTAATTTCAATTTCCTATAAATGAATTACTTATAACTTATTCACTGAATGCCCTAAAAACTACACTAGATTCAAACTTCGTTCAAACCGTCACCTTCGAGCCAATGTATCTCAATTTCTGTAAATGATACCAAAAACTGATTAACTGATAAAATGTCATTAGAGTTTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGGCCC</site>
                <isoschizomers>
                    <enzyme>ApaI</enzyme>
                    <enzyme>Bsp120I</enzyme>
                    <enzyme>PspOMI</enzyme>
                </isoschizomers>
                <canonical_bands>500 348 152</canonical_bands>
                <polymorphic_bands>652 348</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>500 348 152</canonical_bands>
                <polymorphic_bands>652 348</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>500 205 152 143</canonical_bands>
                <polymorphic_bands>652 205 143</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>500 205 152 143</canonical_bands>
                <polymorphic_bands>652 205 143</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>302 284 144 114 66 38 38 14</canonical_bands>
                <polymorphic_bands>302 284 145 114 66 38 37 14</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>340 212 152 152 74 64 6</canonical_bands>
                <polymorphic_bands>340 304 212 74 64 6</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>187 152 143 111 103 69 58 53 42 26 23 21 6 6</canonical_bands>
                <polymorphic_bands>187 175 143 111 103 69 58 53 42 26 21 6 6</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>352 285 152 144 67</canonical_bands>
                <polymorphic_bands>352 296 285 67</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>355 282 152 144 67</canonical_bands>
                <polymorphic_bands>355 296 282 67</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATTTTAGGGTATGTGAAATGT</pcr_primer_p1>
		<pcr_primer_p2>CAATTTTTCAATTATTCTGGAAC</pcr_primer_p2>
		<pcr_amplicon_size>497</pcr_amplicon_size>
		<canonical_amplicon>TGATTTTAGGGTATGTGAAATGTATTATTCCGGTACCAAAAAATTGGAACCGTGGCAGAGAAACATCGTCGGCCGTGGCCGAAGGTCCCACAAGGAAATCTACCGTAACTTAAAAATACATTTATTTTCGTTAATTGTTTTCTCAATTTTCGTGCGTTTTCCCTCATTTTTAGAAAAATTGACCGAAAACTCACTAAAATCGAGATACAATGAAACCTGTAATAGAAGGGCCCCTCACACTTTCAATTTTAAGCTCAATTACCTCGGTTCCTGTGAAAGTCATCAAAAATGTGTCCACTGATAAAATGTTTTTCATAATATCACCAGCATTTTATCAATTGACAAAATTTCGATGGCTTTTATAGAAACCGAGATAATAGGGCCCTTCTATCTCAGTTTTACGGTAATCTCAGAAAATATAGTAGGTTACGGTAGCTGTCGTTGTGGGACCTTCGGCCACAGCTTCTATTTTTTGTTCCAGAATAATTGAAAAATTG</canonical_amplicon>
		<polymorphic_amplicon>TGATTTTAGGGTATGTGAAATGTATTATTCCGGTACCAAAAAATTGGAACCGTGGCAGAGAAACATCGTCGGCCGTGGCCGAAGGTCCCACAAGGAAATCTACCGTAACTTAAAAATACATTTATTTTCGTTAATTGTTTTCTCAATTTTCGTGCGTTTTCCCTCATTTTTAGAAAAATTGACCGAAAACTCACTAAAATCGAGATACAATGAAACCTGTAATAGAAGGGCMCCTCACACTTTCAATTTTAAGCTCAATTACCTCGGTTCCTGTGAAAGTCATCAAAAATGTGTCCACTGATAAAATGTTTTTCATAATATCACCAGCATTTTATCAATTGACAAAATTTCGATGGCTTTTATAGAAACCGAGATAATAGGGCCCTTCTATCTCAGTTTTACGGTAATCTCAGAAAATATAGTAGGTTACGGTAGCTGTCGTTGTGGGACCTTCGGCCACAGCTTCTATTTTTTGTTCCAGAATAATTGAAAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25974</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>204389</contig_pos>
        <strand>+</strand>
        <context>GATTTTTCTG[A/G]RCAGATGGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAATCATATTAAAAATTAAAATTGAAAAGGAGCAAACTGATTTTTCTG</left_flank>
        <right_flank>GCAGATGGACAGATATATATTGAAATAGAAAACCTGTAAAAGAAGGGCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTAGAAAGTTCTCACGATTCCAAGTCTCGTGCAATATGTTGTGACATGCGTGGAAACTGAATGACTGGATGAAGACGTCAGGCATCACCTTCAGAATCTAGAAGAGATTCTGAAAGTTACTAAGGAGCCAGAAACTTATTCATCACATGTCCGTTGATCTTTTTGGCCCACACACACATTCAGGAAATTGAGAGTGAATATGATGTGCTCGAAATATCAAAATGAGATTGAGTAGACACGGACATTTGCAAAAAAGAGAGAAGAGGATATATATTTTGGAAATCTCAACCAAATCAAAAAGGAAATATGAGTCGTTCGGTGACAGGATGGGGCACACCCTAAATCTACAAAATGACGTTGGAGAATATTCATTACGAACGATTCATAAAAGATGTCATTCTGGAAACTCTTCTACTTTGATTCATGTTTGTTTAGTTCTGGAGAAAGAGAAATCATATTAAAAATTAAAATTGAAAAGGAGCAAACTGATTTTTCTGAGCAGATGGACAGATATATATTGAAATAGAAAACCTGTAAAAGAAGGGCCCACACACTATCAAGTTTGAGATAATTTATCTCGGCTCCTGGTAAAGATATAAAAATTTATAAACTGATAAAATGATTGTAATATTATGATAAACAATTTATCAGTTGACACCTTTTTTCATAACTTGGACAGGAACAGAGATAAATTGACTCAATCTTGACAGTGTGGGGGCCCTTGTATTACAGGTTTTACATTAATAAAAAGCGAAACACTTATCTAACCAAATGAAGGAACACCTTGTATTTTATTGTTTATCATCCTTTTTTATATGTTCCAAACCAATGAATTGCTCATCATTCTGACGATAACAACATTACAAATGGGAGTTGTCTCGTCCCAGAAGTCGAAACCATTGTTGCCATCCACGTCACCATGAGTCGTCCCTGGCACCACCTGATGCGATAGACTAGGAAGGAAGGAAATAATTTGGAAAGTTTTTCATAAAAGTAAA</canonical>
            <polymorphic>CTCTAGAAAGTTCTCACGATTCCAAGTCTCGTGCAATATGTTGTGACATGCGTGGAAACTGAATGACTGGATGAAGACGTCAGGCATCACCTTCAGAATCTAGAAGAGATTCTGAAAGTTACTAAGGAGCCAGAAACTTATTCATCACATGTCCGTTGATCTTTTTGGCCCACACACACATTCAGGAAATTGAGAGTGAATATGATGTGCTCGAAATATCAAAATGAGATTGAGTAGACACGGACATTTGCAAAAAAGAGAGAAGAGGATATATATTTTGGAAATCTCAACCAAATCAAAAAGGAAATATGAGTCGTTCGGTGACAGGATGGGGCACACCCTAAATCTACAAAATGACGTTGGAGAATATTCATTACGAACGATTCATAAAAGATGTCATTCTGGAAACTCTTCTACTTTGATTCATGTTTGTTTAGTTCTGGAGAAAGAGAAATCATATTAAAAATTAAAATTGAAAAGGAGCAAACTGATTTTTCTGRGCAGATGGACAGATATATATTGAAATAGAAAACCTGTAAAAGAAGGGCCCACACACTATCAAGTTTGAGATAATTTATCTCGGCTCCTGGTAAAGATATAAAAATTTATAAACTGATAAAATGATTGTAATATTATGATAAACAATTTATCAGTTGACACCTTTTTTCATAACTTGGACAGGAACAGAGATAAATTGACTCAATCTTGACAGTGTGGGGGCCCTTGTATTACAGGTTTTACATTAATAAAAAGCGAAACACTTATCTAACCAAATGAAGGAACACCTTGTATTTTATTGTTTATCATCCTTTTTTATATGTTCCAAACCAATGAATTGCTCATCATTCTGACGATAACAACATTACAAATGGGAGTTGTCTCGTCCCAGAAGTCGAAACCATTGTTGCCATCCACGTCACCATGAGTCGTCCCTGGCACCACCTGATGCGATAGACTAGGAAGGAAGGAAATAATTTGGAAAGTTTTTCATAAAAGTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 375 122</canonical_bands>
                <polymorphic_bands>878 122</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>385 351 151 95 18</canonical_bands>
                <polymorphic_bands>736 151 95 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTCTGGAGAAAGAGAAATCAT</pcr_primer_p1>
		<pcr_primer_p2>TTAGATAAGTGTTTCGCTTTTTATT</pcr_primer_p2>
		<pcr_amplicon_size>334</pcr_amplicon_size>
		<canonical_amplicon>AGTTCTGGAGAAAGAGAAATCATATTAAAAATTAAAATTGAAAAGGAGCAAACTGATTTTTCTGAGCAGATGGACAGATATATATTGAAATAGAAAACCTGTAAAAGAAGGGCCCACACACTATCAAGTTTGAGATAATTTATCTCGGCTCCTGGTAAAGATATAAAAATTTATAAACTGATAAAATGATTGTAATATTATGATAAACAATTTATCAGTTGACACCTTTTTTCATAACTTGGACAGGAACAGAGATAAATTGACTCAATCTTGACAGTGTGGGGGCCCTTGTATTACAGGTTTTACATTAATAAAAAGCGAAACACTTATCTAA</canonical_amplicon>
		<polymorphic_amplicon>AGTTCTGGAGAAAGAGAAATCATATTAAAAATTAAAATTGAAAAGGAGCAAACTGATTTTTCTGRGCAGATGGACAGATATATATTGAAATAGAAAACCTGTAAAAGAAGGGCCCACACACTATCAAGTTTGAGATAATTTATCTCGGCTCCTGGTAAAGATATAAAAATTTATAAACTGATAAAATGATTGTAATATTATGATAAACAATTTATCAGTTGACACCTTTTTTCATAACTTGGACAGGAACAGAGATAAATTGACTCAATCTTGACAGTGTGGGGGCCCTTGTATTACAGGTTTTACATTAATAAAAAGCGAAACACTTATCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25975</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>204390</contig_pos>
        <strand>+</strand>
        <context>ATTTTTCTGR[A/G]CAGATGGACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAATCATATTAAAAATTAAAATTGAAAAGGAGCAAACTGATTTTTCTGA</left_flank>
        <right_flank>CAGATGGACAGATATATATTGAAATAGAAAACCTGTAAAAGAAGGGCCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTAGAAAGTTCTCACGATTCCAAGTCTCGTGCAATATGTTGTGACATGCGTGGAAACTGAATGACTGGATGAAGACGTCAGGCATCACCTTCAGAATCTAGAAGAGATTCTGAAAGTTACTAAGGAGCCAGAAACTTATTCATCACATGTCCGTTGATCTTTTTGGCCCACACACACATTCAGGAAATTGAGAGTGAATATGATGTGCTCGAAATATCAAAATGAGATTGAGTAGACACGGACATTTGCAAAAAAGAGAGAAGAGGATATATATTTTGGAAATCTCAACCAAATCAAAAAGGAAATATGAGTCGTTCGGTGACAGGATGGGGCACACCCTAAATCTACAAAATGACGTTGGAGAATATTCATTACGAACGATTCATAAAAGATGTCATTCTGGAAACTCTTCTACTTTGATTCATGTTTGTTTAGTTCTGGAGAAAGAGAAATCATATTAAAAATTAAAATTGAAAAGGAGCAAACTGATTTTTCTGAGCAGATGGACAGATATATATTGAAATAGAAAACCTGTAAAAGAAGGGCCCACACACTATCAAGTTTGAGATAATTTATCTCGGCTCCTGGTAAAGATATAAAAATTTATAAACTGATAAAATGATTGTAATATTATGATAAACAATTTATCAGTTGACACCTTTTTTCATAACTTGGACAGGAACAGAGATAAATTGACTCAATCTTGACAGTGTGGGGGCCCTTGTATTACAGGTTTTACATTAATAAAAAGCGAAACACTTATCTAACCAAATGAAGGAACACCTTGTATTTTATTGTTTATCATCCTTTTTTATATGTTCCAAACCAATGAATTGCTCATCATTCTGACGATAACAACATTACAAATGGGAGTTGTCTCGTCCCAGAAGTCGAAACCATTGTTGCCATCCACGTCACCATGAGTCGTCCCTGGCACCACCTGATGCGATAGACTAGGAAGGAAGGAAATAATTTGGAAAGTTTTTCATAAAAGTAAAG</canonical>
            <polymorphic>TCTAGAAAGTTCTCACGATTCCAAGTCTCGTGCAATATGTTGTGACATGCGTGGAAACTGAATGACTGGATGAAGACGTCAGGCATCACCTTCAGAATCTAGAAGAGATTCTGAAAGTTACTAAGGAGCCAGAAACTTATTCATCACATGTCCGTTGATCTTTTTGGCCCACACACACATTCAGGAAATTGAGAGTGAATATGATGTGCTCGAAATATCAAAATGAGATTGAGTAGACACGGACATTTGCAAAAAAGAGAGAAGAGGATATATATTTTGGAAATCTCAACCAAATCAAAAAGGAAATATGAGTCGTTCGGTGACAGGATGGGGCACACCCTAAATCTACAAAATGACGTTGGAGAATATTCATTACGAACGATTCATAAAAGATGTCATTCTGGAAACTCTTCTACTTTGATTCATGTTTGTTTAGTTCTGGAGAAAGAGAAATCATATTAAAAATTAAAATTGAAAAGGAGCAAACTGATTTTTCTGARCAGATGGACAGATATATATTGAAATAGAAAACCTGTAAAAGAAGGGCCCACACACTATCAAGTTTGAGATAATTTATCTCGGCTCCTGGTAAAGATATAAAAATTTATAAACTGATAAAATGATTGTAATATTATGATAAACAATTTATCAGTTGACACCTTTTTTCATAACTTGGACAGGAACAGAGATAAATTGACTCAATCTTGACAGTGTGGGGGCCCTTGTATTACAGGTTTTACATTAATAAAAAGCGAAACACTTATCTAACCAAATGAAGGAACACCTTGTATTTTATTGTTTATCATCCTTTTTTATATGTTCCAAACCAATGAATTGCTCATCATTCTGACGATAACAACATTACAAATGGGAGTTGTCTCGTCCCAGAAGTCGAAACCATTGTTGCCATCCACGTCACCATGAGTCGTCCCTGGCACCACCTGATGCGATAGACTAGGAAGGAAGGAAATAATTTGGAAAGTTTTTCATAAAAGTAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 375 121</canonical_bands>
                <polymorphic_bands>879 121</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTCTGGAGAAAGAGAAATCAT</pcr_primer_p1>
		<pcr_primer_p2>TTAGATAAGTGTTTCGCTTTTTATT</pcr_primer_p2>
		<pcr_amplicon_size>334</pcr_amplicon_size>
		<canonical_amplicon>AGTTCTGGAGAAAGAGAAATCATATTAAAAATTAAAATTGAAAAGGAGCAAACTGATTTTTCTGAGCAGATGGACAGATATATATTGAAATAGAAAACCTGTAAAAGAAGGGCCCACACACTATCAAGTTTGAGATAATTTATCTCGGCTCCTGGTAAAGATATAAAAATTTATAAACTGATAAAATGATTGTAATATTATGATAAACAATTTATCAGTTGACACCTTTTTTCATAACTTGGACAGGAACAGAGATAAATTGACTCAATCTTGACAGTGTGGGGGCCCTTGTATTACAGGTTTTACATTAATAAAAAGCGAAACACTTATCTAA</canonical_amplicon>
		<polymorphic_amplicon>AGTTCTGGAGAAAGAGAAATCATATTAAAAATTAAAATTGAAAAGGAGCAAACTGATTTTTCTGARCAGATGGACAGATATATATTGAAATAGAAAACCTGTAAAAGAAGGGCCCACACACTATCAAGTTTGAGATAATTTATCTCGGCTCCTGGTAAAGATATAAAAATTTATAAACTGATAAAATGATTGTAATATTATGATAAACAATTTATCAGTTGACACCTTTTTTCATAACTTGGACAGGAACAGAGATAAATTGACTCAATCTTGACAGTGTGGGGGCCCTTGTATTACAGGTTTTACATTAATAAAAAGCGAAACACTTATCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25976</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>206894</contig_pos>
        <strand>+</strand>
        <context>atAGTTTATG[A/C]TTTTTTCCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTCAGCTGCTTGAAGCACCAGAGGTGCGGCAAACAGGCTGATAGTTTATG</left_flank>
        <right_flank>TTTTTTCCGATTTTGTGAACTTTCAAGACAATTCAAGATTTTTAAAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAGAAGTGAATGAGAAGAGGGAGGACAAAAGTGAACGGATTCGATGAGGTTGTGATCAGTGAAGAGGTCAGCAGAAGTCGGTCACATTGAATACGTTGATGTCACGATTCATACCGCAGCATCTGGAAAAGTTCGATGTTTTTGAGGAATCGGAGAACTTGATATTTTCTATAGGCAAAACAAATTAAGGCATTAAGCCAGGATCAAGGATTTGTAGGAAGGTTTGACCGATCTACATGACGTTACTATCTGTTTGTACTAGAGACAAACATCCGAGAACTACGAGCAAATACAAGGAAGTTCTTATGACTAACACTACACGCTCTCCCACAGAAGAATTACGGATTGCAAATTTAGTTTGGATGGTTGATAATTCTAATAATAAATTAATTGCGATATGTGGTAGATAATTCTAATTATTAATTAATTGCGCCGAAGACGCGCCAGTCAGCTGCTTGAAGCACCAGAGGTGCGGCAAACAGGCTGATAGTTTATGATTTTTTCCGATTTTGTGAACTTTCAAGACAATTCAAGATTTTTAAAAATTTAATTAGTGGTTTAAGAATCCTGTACGGTCCTTTTCCAGAAAAAACATTCCGAAAATGCCAATTTTCCAGATTTGATAAACTGATAAATTGATATTCATAAAATCTCAAAAATATTATCAGTTGACAACCTTTTTCAATCTTTGACAGGATCCGAGATAAATTGGTTCAAAGTCAATAGTTAGGGAGCTATTGCAGGGTTACGGTATCTTAAAAATCAAAAATGGTTTTTAAACACTTTTTCAAGAACTATCTGAATCATTTTGAATCTCAGCAAACACAGTAATAAAATCTGGAATTATACTCCATACCTGCTAGCCCAATTTTTTTCCTGCTAGATCAAACTTAAATTTGCAGTTTGTAATTCTTCTGTGGGAGACGGTGCACTGAAAAAATCCCCAACTTACACATTTTTGACTTGGAATGTCGAGTTATAAGTAGTTTCAGTGAAG</canonical>
            <polymorphic>AAGAAGAAGTGAATGAGAAGAGGGAGGACAAAAGTGAACGGATTCGATGAGGTTGTGATCAGTGAAGAGGTCAGCAGAAGTCGGTCACATTGAATACGTTGATGTCACGATTCATACCGCAGCATCTGGAAAAGTTCGATGTTTTTGAGGAATCGGAGAACTTGATATTTTCTATAGGCAAAACAAATTAAGGCATTAAGCCAGGATCAAGGATTTGTAGGAAGGTTTGACCGATCTACATGACGTTACTATCTGTTTGTACTAGAGACAAACATCCGAGAACTACGAGCAAATACAAGGAAGTTCTTATGACTAACACTACACGCTCTCCCACAGAAGAATTACGGATTGCAAATTTAGTTTGGATGGTTGATAATTCTAATAATAAATTAATTGCGATATGTGGTAGATAATTCTAATTATTAATTAATTGCGCCGAAGACGCGCCAGTCAGCTGCTTGAAGCACCAGAGGTGCGGCAAACAGGCTGATAGTTTATGMTTTTTTCCGATTTTGTGAACTTTCAAGACAATTCAAGATTTTTAAAAATTTAATTAGTGGTTTAAGAATCCTGTACGGTCCTTTTCCAGAAAAAACATTCCGAAAATGCCAATTTTCCAGATTTGATAAACTGATAAATTGATATTCATAAAATCTCAAAAATATTATCAGTTGACAACCTTTTTCAATCTTTGACAGGATCCGAGATAAATTGGTTCAAAGTCAATAGTTAGGGAGCTATTGCAGGGTTACGGTATCTTAAAAATCAAAAATGGTTTTTAAACACTTTTTCAAGAACTATCTGAATCATTTTGAATCTCAGCAAACACAGTAATAAAATCTGGAATTATACTCCATACCTGCTAGCCCAATTTTTTTCCTGCTAGATCAAACTTAAATTTGCAGTTTGTAATTCTTCTGTGGGAGACGGTGCACTGAAAAAATCCCCAACTTACACATTTTTGACTTGGAATGTCGAGTTATAAGTAGTTTCAGTGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTACGGATTGCAAATTTAGTT</pcr_primer_p1>
		<pcr_primer_p2>CGTACAGGATTCTTAAACCACTA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AATTACGGATTGCAAATTTAGTTTGGATGGTTGATAATTCTAATAATAAATTAATTGCGATATGTGGTAGATAATTCTAATTATTAATTAATTGCGCCGAAGACGCGCCAGTCAGCTGCTTGAAGCACCAGAGGTGCGGCAAACAGGCTGATAGTTTATGATTTTTTCCGATTTTGTGAACTTTCAAGACAATTCAAGATTTTTAAAAATTTAATTAGTGGTTTAAGAATCCTGTACG</canonical_amplicon>
		<polymorphic_amplicon>AATTACGGATTGCAAATTTAGTTTGGATGGTTGATAATTCTAATAATAAATTAATTGCGATATGTGGTAGATAATTCTAATTATTAATTAATTGCGCCGAAGACGCGCCAGTCAGCTGCTTGAAGCACCAGAGGTGCGGCAAACAGGCTGATAGTTTATGMTTTTTTCCGATTTTGTGAACTTTCAAGACAATTCAAGATTTTTAAAAATTTAATTAGTGGTTTAAGAATCCTGTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25979</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>274151</contig_pos>
        <strand></strand>
        <context>aacctatatc[A/G]ctcttttcct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTCTAATATAATGCAAGGCCACTCTATACATACCCTTTTAACCTATATC</left_flank>
        <right_flank>CTCTTTTCCTGTAAAAAATATCAAAAAGTGGTCAACTGACAAACTGTTTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTGATTGATTATGACTCTCTAATTCGATTGGACTTATTTGTCAAAACACACATTTCACATGAGAATCTGGAATTCTGGATATTCAAAGTATACGTCAAGCGTTTAGAAATTCTATGTTTAGAAATTCTGATCTTTTTAATTTCACCTGCTCATCTTTGAAATCAAAATTTGATTTTTCATGTATACCTTTCATAGTGGAACGCTTTCTTTTCTAACTATTACTAATTGTGTTTAAGCCAAGATCAGAAATATCAGAAAACCAAAAAACAATATCAAAAGTCGTTTCTGTTCCATGATTTCTCAGAATAGCTTTCAAGAGTCTTTTAACAAATAAGGAATTGAGGAGAACTTGAGAAGTTAAGAACGCTATTAATTTGCTGCTTCAAAATAATAAACTCTTCAATTGGCAAGTTGCAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGGCCACTCTATACATACCCTTTTAACCTATATCACTCTTTTCCTGTAAAAAATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATTTTGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGGCTAAAAATGCAAGTGTCGCATGGTCTTCTAGTAAAGTGTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCCCCTACCGATGTTTAATTAGAATGTGAATTTAGAATATCAAAACTTTTGATCTTTTATTTTTCACACAAAGGCGTTCGTGACTTGTTTCATGATCAGCCAACCATTGTTTTTATGTCTAGAATTTATTATCTTTTCTCTTCTTCAACTGATCTTCATCTTCATTTCAGAACATAACAGTTATGCATTACCTCGTATACTACAACTCCAATCAATCAAAGTTAGATGACACTTGGGTTTATTACCAAATCCTGACATATTTTGAATTTGCTTGTATTTGCTTCAGGTGAATTTTTTG</canonical>
            <polymorphic>AATTTTGATTGATTATGACTCTCTAATTCGATTGGACTTATTTGTCAAAACACACATTTCACATGAGAATCTGGAATTCTGGATATTCAAAGTATACGTCAAGCGTTTAGAAATTCTATGTTTAGAAATTCTGATCTTTTTAATTTCACCTGCTCATCTTTGAAATCAAAATTTGATTTTTCATGTATACCTTTCATAGTGGAACGCTTTCTTTTCTAACTATTACTAATTGTGTTTAAGCCAAGATCAGAAATATCAGAAAACCAAAAAACAATATCAAAAGTCGTTTCTGTTCCATGATTTCTCAGAATAGCTTTCAAGAGTCTTTTAACAAATAAGGAATTGAGGAGAACTTGAGAAGTTAAGAACGCTATTAATTTGCTGCTTCAAAATAATAAACTCTTCAATTGGCAAGTTGCAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGGCCACTCTATACATACCCTTTTAACCTATATCRCTCTTTTCCTGTAAAAAATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATTTTGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGGCTAAAAATGCAAGTGTCGCATGGTCTTCTAGTAAAGTGTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCCCCTACCGATGTTTAATTAGAATGTGAATTTAGAATATCAAAACTTTTGATCTTTTATTTTTCACACAAAGGCGTTCGTGACTTGTTTCATGATCAGCCAACCATTGTTTTTATGTCTAGAATTTATTATCTTTTCTCTTCTTCAACTGATCTTCATCTTCATTTCAGAACATAACAGTTATGCATTACCTCGTATACTACAACTCCAATCAATCAAAGTTAGATGACACTTGGGTTTATTACCAAATCCTGACATATTTTGAATTTGCTTGTATTTGCTTCAGGTGAATTTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>216 149 87 72 58 53 53 52 52 38 33 30 29 23 21 14 9 7 2 2</canonical_bands>
                <polymorphic_bands>216 149 87 72 59 58 53 53 52 52 38 33 23 21 14 9 7 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGGCAAGTTGCAGTTTA</pcr_primer_p1>
		<pcr_primer_p2>GGCTGAAATGAATACTGTAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>AATTGGCAAGTTGCAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGGCCACTCTATACATACCCTTTTAACCTATATCACTCTTTTCCTGTAAAAAATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATTTTGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGGCTAAAAATGCAAGTGTCGCATGGTCTTCTAGTAAAGTGTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCC</canonical_amplicon>
		<polymorphic_amplicon>AATTGGCAAGTTGCAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGGCCACTCTATACATACCCTTTTAACCTATATCRCTCTTTTCCTGTAAAAAATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATTTTGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGGCTAAAAATGCAAGTGTCGCATGGTCTTCTAGTAAAGTGTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25980</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>274168</contig_pos>
        <strand></strand>
        <context>tcctgtaaaa[A/G]atatcaaaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGCCACTCTATACATACCCTTTTAACCTATATCACTCTTTTCCTGTAAAA</left_flank>
        <right_flank>ATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCTCTAATTCGATTGGACTTATTTGTCAAAACACACATTTCACATGAGAATCTGGAATTCTGGATATTCAAAGTATACGTCAAGCGTTTAGAAATTCTATGTTTAGAAATTCTGATCTTTTTAATTTCACCTGCTCATCTTTGAAATCAAAATTTGATTTTTCATGTATACCTTTCATAGTGGAACGCTTTCTTTTCTAACTATTACTAATTGTGTTTAAGCCAAGATCAGAAATATCAGAAAACCAAAAAACAATATCAAAAGTCGTTTCTGTTCCATGATTTCTCAGAATAGCTTTCAAGAGTCTTTTAACAAATAAGGAATTGAGGAGAACTTGAGAAGTTAAGAACGCTATTAATTTGCTGCTTCAAAATAATAAACTCTTCAATTGGCAAGTTGCAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGGCCACTCTATACATACCCTTTTAACCTATATCACTCTTTTCCTGTAAAAAATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATTTTGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGGCTAAAAATGCAAGTGTCGCATGGTCTTCTAGTAAAGTGTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCCCCTACCGATGTTTAATTAGAATGTGAATTTAGAATATCAAAACTTTTGATCTTTTATTTTTCACACAAAGGCGTTCGTGACTTGTTTCATGATCAGCCAACCATTGTTTTTATGTCTAGAATTTATTATCTTTTCTCTTCTTCAACTGATCTTCATCTTCATTTCAGAACATAACAGTTATGCATTACCTCGTATACTACAACTCCAATCAATCAAAGTTAGATGACACTTGGGTTTATTACCAAATCCTGACATATTTTGAATTTGCTTGTATTTGCTTCAGGTGAATTTTTTGAATATCTTGTTCATTAT</canonical>
            <polymorphic>ACTCTCTAATTCGATTGGACTTATTTGTCAAAACACACATTTCACATGAGAATCTGGAATTCTGGATATTCAAAGTATACGTCAAGCGTTTAGAAATTCTATGTTTAGAAATTCTGATCTTTTTAATTTCACCTGCTCATCTTTGAAATCAAAATTTGATTTTTCATGTATACCTTTCATAGTGGAACGCTTTCTTTTCTAACTATTACTAATTGTGTTTAAGCCAAGATCAGAAATATCAGAAAACCAAAAAACAATATCAAAAGTCGTTTCTGTTCCATGATTTCTCAGAATAGCTTTCAAGAGTCTTTTAACAAATAAGGAATTGAGGAGAACTTGAGAAGTTAAGAACGCTATTAATTTGCTGCTTCAAAATAATAAACTCTTCAATTGGCAAGTTGCAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGGCCACTCTATACATACCCTTTTAACCTATATCACTCTTTTCCTGTAAAARATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATTTTGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGGCTAAAAATGCAAGTGTCGCATGGTCTTCTAGTAAAGTGTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCCCCTACCGATGTTTAATTAGAATGTGAATTTAGAATATCAAAACTTTTGATCTTTTATTTTTCACACAAAGGCGTTCGTGACTTGTTTCATGATCAGCCAACCATTGTTTTTATGTCTAGAATTTATTATCTTTTCTCTTCTTCAACTGATCTTCATCTTCATTTCAGAACATAACAGTTATGCATTACCTCGTATACTACAACTCCAATCAATCAAAGTTAGATGACACTTGGGTTTATTACCAAATCCTGACATATTTTGAATTTGCTTGTATTTGCTTCAGGTGAATTTTTTGAATATCTTGTTCATTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGGCAAGTTGCAGTTTA</pcr_primer_p1>
		<pcr_primer_p2>GGCTGAAATGAATACTGTAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>AATTGGCAAGTTGCAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGGCCACTCTATACATACCCTTTTAACCTATATCACTCTTTTCCTGTAAAAAATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATTTTGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGGCTAAAAATGCAAGTGTCGCATGGTCTTCTAGTAAAGTGTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCC</canonical_amplicon>
		<polymorphic_amplicon>AATTGGCAAGTTGCAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGGCCACTCTATACATACCCTTTTAACCTATATCACTCTTTTCCTGTAAAARATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATTTTGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGGCTAAAAATGCAAGTGTCGCATGGTCTTCTAGTAAAGTGTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25981</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>274221</contig_pos>
        <strand></strand>
        <context>caaaaaaatt[T/G]tgtcagttga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATT</left_flank>
        <right_flank>TGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGGAATTCTGGATATTCAAAGTATACGTCAAGCGTTTAGAAATTCTATGTTTAGAAATTCTGATCTTTTTAATTTCACCTGCTCATCTTTGAAATCAAAATTTGATTTTTCATGTATACCTTTCATAGTGGAACGCTTTCTTTTCTAACTATTACTAATTGTGTTTAAGCCAAGATCAGAAATATCAGAAAACCAAAAAACAATATCAAAAGTCGTTTCTGTTCCATGATTTCTCAGAATAGCTTTCAAGAGTCTTTTAACAAATAAGGAATTGAGGAGAACTTGAGAAGTTAAGAACGCTATTAATTTGCTGCTTCAAAATAATAAACTCTTCAATTGGCAAGTTGCAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGGCCACTCTATACATACCCTTTTAACCTATATCACTCTTTTCCTGTAAAAAATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATTTTGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGGCTAAAAATGCAAGTGTCGCATGGTCTTCTAGTAAAGTGTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCCCCTACCGATGTTTAATTAGAATGTGAATTTAGAATATCAAAACTTTTGATCTTTTATTTTTCACACAAAGGCGTTCGTGACTTGTTTCATGATCAGCCAACCATTGTTTTTATGTCTAGAATTTATTATCTTTTCTCTTCTTCAACTGATCTTCATCTTCATTTCAGAACATAACAGTTATGCATTACCTCGTATACTACAACTCCAATCAATCAAAGTTAGATGACACTTGGGTTTATTACCAAATCCTGACATATTTTGAATTTGCTTGTATTTGCTTCAGGTGAATTTTTTGAATATCTTGTTCATTATTATCTCTCAAATTCCAGTTATCCTCCAATTATATTCCTTGGCTATCAACTTTT</canonical>
            <polymorphic>CTGGAATTCTGGATATTCAAAGTATACGTCAAGCGTTTAGAAATTCTATGTTTAGAAATTCTGATCTTTTTAATTTCACCTGCTCATCTTTGAAATCAAAATTTGATTTTTCATGTATACCTTTCATAGTGGAACGCTTTCTTTTCTAACTATTACTAATTGTGTTTAAGCCAAGATCAGAAATATCAGAAAACCAAAAAACAATATCAAAAGTCGTTTCTGTTCCATGATTTCTCAGAATAGCTTTCAAGAGTCTTTTAACAAATAAGGAATTGAGGAGAACTTGAGAAGTTAAGAACGCTATTAATTTGCTGCTTCAAAATAATAAACTCTTCAATTGGCAAGTTGCAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGGCCACTCTATACATACCCTTTTAACCTATATCACTCTTTTCCTGTAAAAAATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATTKTGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGGCTAAAAATGCAAGTGTCGCATGGTCTTCTAGTAAAGTGTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCCCCTACCGATGTTTAATTAGAATGTGAATTTAGAATATCAAAACTTTTGATCTTTTATTTTTCACACAAAGGCGTTCGTGACTTGTTTCATGATCAGCCAACCATTGTTTTTATGTCTAGAATTTATTATCTTTTCTCTTCTTCAACTGATCTTCATCTTCATTTCAGAACATAACAGTTATGCATTACCTCGTATACTACAACTCCAATCAATCAAAGTTAGATGACACTTGGGTTTATTACCAAATCCTGACATATTTTGAATTTGCTTGTATTTGCTTCAGGTGAATTTTTTGAATATCTTGTTCATTATTATCTCTCAAATTCCAGTTATCCTCCAATTATATTCCTTGGCTATCAACTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>396 165 142 94 44 43 37 35 25 15 4</canonical_bands>
                <polymorphic_bands>561 142 94 44 43 37 35 25 15 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGGCAAGTTGCAGTTTA</pcr_primer_p1>
		<pcr_primer_p2>GGCTGAAATGAATACTGTAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>AATTGGCAAGTTGCAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGGCCACTCTATACATACCCTTTTAACCTATATCACTCTTTTCCTGTAAAAAATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATTTTGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGGCTAAAAATGCAAGTGTCGCATGGTCTTCTAGTAAAGTGTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCC</canonical_amplicon>
		<polymorphic_amplicon>AATTGGCAAGTTGCAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGGCCACTCTATACATACCCTTTTAACCTATATCACTCTTTTCCTGTAAAAAATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATTKTGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGGCTAAAAATGCAAGTGTCGCATGGTCTTCTAGTAAAGTGTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25982</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>274423</contig_pos>
        <strand>+</strand>
        <context>TTTTTCACAC[A/G]AAGGCGTTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGAATGTGAATTTAGAATATCAAAACTTTTGATCTTTTATTTTTCACAC</left_flank>
        <right_flank>AAGGCGTTCGTGACTTGTTTCATGATCAGCCAACCATTGTTTTTATGTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATCAAAAGTCGTTTCTGTTCCATGATTTCTCAGAATAGCTTTCAAGAGTCTTTTAACAAATAAGGAATTGAGGAGAACTTGAGAAGTTAAGAACGCTATTAATTTGCTGCTTCAAAATAATAAACTCTTCAATTGGCAAGTTGCAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGGCCACTCTATACATACCCTTTTAACCTATATCACTCTTTTCCTGTAAAAAATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATTTTGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGGCTAAAAATGCAAGTGTCGCATGGTCTTCTAGTAAAGTGTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCCCCTACCGATGTTTAATTAGAATGTGAATTTAGAATATCAAAACTTTTGATCTTTTATTTTTCACACAAAGGCGTTCGTGACTTGTTTCATGATCAGCCAACCATTGTTTTTATGTCTAGAATTTATTATCTTTTCTCTTCTTCAACTGATCTTCATCTTCATTTCAGAACATAACAGTTATGCATTACCTCGTATACTACAACTCCAATCAATCAAAGTTAGATGACACTTGGGTTTATTACCAAATCCTGACATATTTTGAATTTGCTTGTATTTGCTTCAGGTGAATTTTTTGAATATCTTGTTCATTATTATCTCTCAAATTCCAGTTATCCTCCAATTATATTCCTTGGCTATCAACTTTTCCAACACAGAATATTCCATCAGAATCTTCAAAATTGTGTGAGAGCTGCGGTTGTAGAGTACCTGATTCAGTTGACATCTCGAAGTATTCAAATCTTTTTGATTTTCAATTCAGAAGAAAATGGATTGGGTAAGAATTCAAACTTTTAGTTTTTATCAGCAAAGTTTTTTTATTTTCAGCATTTTACTACGCATCATTGGCTC</canonical>
            <polymorphic>AATATCAAAAGTCGTTTCTGTTCCATGATTTCTCAGAATAGCTTTCAAGAGTCTTTTAACAAATAAGGAATTGAGGAGAACTTGAGAAGTTAAGAACGCTATTAATTTGCTGCTTCAAAATAATAAACTCTTCAATTGGCAAGTTGCAGTTTAAATTGTTAAACAATTACCGTAAACACTCTAATATAATGCAAGGCCACTCTATACATACCCTTTTAACCTATATCACTCTTTTCCTGTAAAAAATATCAAAAAGTGGTCAACTGACAAACTGTTTATTATAAAATCAAAAAAATTTTGTCAGTTGATCACTTTTTGATATCATTTACAGGAAACGAGATTGATTGGCTAAAAATGCAAGTGTCGCATGGTCTTCTAGTAAAGTGTTTACGGTATTCTAGCTTCTTGTAGTTCTACAGTATTCATTTCAGCCCCTACCGATGTTTAATTAGAATGTGAATTTAGAATATCAAAACTTTTGATCTTTTATTTTTCACACRAAGGCGTTCGTGACTTGTTTCATGATCAGCCAACCATTGTTTTTATGTCTAGAATTTATTATCTTTTCTCTTCTTCAACTGATCTTCATCTTCATTTCAGAACATAACAGTTATGCATTACCTCGTATACTACAACTCCAATCAATCAAAGTTAGATGACACTTGGGTTTATTACCAAATCCTGACATATTTTGAATTTGCTTGTATTTGCTTCAGGTGAATTTTTTGAATATCTTGTTCATTATTATCTCTCAAATTCCAGTTATCCTCCAATTATATTCCTTGGCTATCAACTTTTCCAACACAGAATATTCCATCAGAATCTTCAAAATTGTGTGAGAGCTGCGGTTGTAGAGTACCTGATTCAGTTGACATCTCGAAGTATTCAAATCTTTTTGATTTTCAATTCAGAAGAAAATGGATTGGGTAAGAATTCAAACTTTTAGTTTTTATCAGCAAAGTTTTTTTATTTTCAGCATTTTACTACGCATCATTGGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTTCTTGTAGTTCTACAGTATTCA</pcr_primer_p1>
		<pcr_primer_p2>CTTTGATTGATTGGAGTTGTAGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGCTTCTTGTAGTTCTACAGTATTCATTTCAGCCCCTACCGATGTTTAATTAGAATGTGAATTTAGAATATCAAAACTTTTGATCTTTTATTTTTCACACAAAGGCGTTCGTGACTTGTTTCATGATCAGCCAACCATTGTTTTTATGTCTAGAATTTATTATCTTTTCTCTTCTTCAACTGATCTTCATCTTCATTTCAGAACATAACAGTTATGCATTACCTCGTATACTACAACTCCAATCAATCAAAG</canonical_amplicon>
		<polymorphic_amplicon>AGCTTCTTGTAGTTCTACAGTATTCATTTCAGCCCCTACCGATGTTTAATTAGAATGTGAATTTAGAATATCAAAACTTTTGATCTTTTATTTTTCACACRAAGGCGTTCGTGACTTGTTTCATGATCAGCCAACCATTGTTTTTATGTCTAGAATTTATTATCTTTTCTCTTCTTCAACTGATCTTCATCTTCATTTCAGAACATAACAGTTATGCATTACCTCGTATACTACAACTCCAATCAATCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25983</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>276111</contig_pos>
        <strand>+</strand>
        <context>TTGTATTATT[A/T]ATMTGCATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGAATTTTCTAAAACTAATTTATTTTGACACTTATTGCTTTGTATTATT</left_flank>
        <right_flank>ATATGCATTTAAAATTCGGTTCCTGCAATTTCGGTTCCTGCAAAAGATAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGAATATCCAGCTCATGAAAACTATTATAAATGTGGTTGCACTCTTCAATTTGTTATCAACAGCATCTGCTGCTCTTGACAACTTTAAATTCTCCCAATCATTTTTGAATGTAGCTGCTACTTTTTTCAACTTTTGCGTCCTCACGTAAGGCTTCAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAATATTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGTGCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGTAGATATAGTGAAAACTATAATAATTATTATTTGAATTTCAGATGAGAATTTTAAATCCAGTATCTCCTTTTCCCGAAGCACTAAACGAAAAACCGTGCCAAATGGCGGCCAAAGAGACGGATGAATATTTCACACAGCTTCGGAAACAGTGGCTCTAGAATCTGGATATTGAATTTTCTAAAACTAATTTATTTTGACACTTATTGCTTTGTATTATTTATATGCATTTAAAATTCGGTTCCTGCAATTTCGGTTCCTGCAAAAGATAACTAGAAGTGATCAACTGATAAAATATTTTTGAAGTTATGATAAACATTTTGTCAGTTGACCACTTTTCTCATCTTCGACAGGAACCGAGATATATGAGCTCATAGTTGACTGTTTGGGTGGCTATCTATCAGAGTTATACGGTATTCTTGAACTTTCAATTCTAGGAAGTCCAGAATTGAATATCATTCTAGAATTGAATACCATTTTCTTGATGTATTTGGAAAAGCCCCGAACATTCTAGAACTTTCTAGAAAATCCTACTATCATACAAAGAAAAATTCACTGTCGTAAAACCTGTAATAGAAGGGCTCCCTAACTTTTAGCTTTAATCCAATTTTTCTCGATTCCTGTCAAAGATGTGAAAAAGTTGTCAATTGATAAATTGTTTATCATAACATCAGAAGCGTTTTTTCATTTGACACATTTTAAGGTTTTGCATAAGAATGGTG</canonical>
            <polymorphic>GTGAATATCCAGCTCATGAAAACTATTATAAATGTGGTTGCACTCTTCAATTTGTTATCAACAGCATCTGCTGCTCTTGACAACTTTAAATTCTCCCAATCATTTTTGAATGTAGCTGCTACTTTTTTCAACTTTTGCGTCCTCACGTAAGGCTTCAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAATATTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGTGCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGTAGATATAGTGAAAACTATAATAATTATTATTTGAATTTCAGATGAGAATTTTAAATCCAGTATCTCCTTTTCCCGAAGCACTAAACGAAAAACCGTGCCAAATGGCGGCCAAAGAGACGGATGAATATTTCACACAGCTTCGGAAACAGTGGCTCTAGAATCTGGATATTGAATTTTCTAAAACTAATTTATTTTGACACTTATTGCTTTGTATTATTWATATGCATTTAAAATTCGGTTCCTGCAATTTCGGTTCCTGCAAAAGATAACTAGAAGTGATCAACTGATAAAATATTTTTGAAGTTATGATAAACATTTTGTCAGTTGACCACTTTTCTCATCTTCGACAGGAACCGAGATATATGAGCTCATAGTTGACTGTTTGGGTGGCTATCTATCAGAGTTATACGGTATTCTTGAACTTTCAATTCTAGGAAGTCCAGAATTGAATATCATTCTAGAATTGAATACCATTTTCTTGATGTATTTGGAAAAGCCCCGAACATTCTAGAACTTTCTAGAAAATCCTACTATCATACAAAGAAAAATTCACTGTCGTAAAACCTGTAATAGAAGGGCTCCCTAACTTTTAGCTTTAATCCAATTTTTCTCGATTCCTGTCAAAGATGTGAAAAAGTTGTCAATTGATAAATTGTTTATCATAACATCAGAAGCGTTTTTTCATTTGACACATTTTAAGGTTTTGCATAAGAATGGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCTCTAGAATCTGGATATTGA</pcr_primer_p1>
		<pcr_primer_p2>TGGACTTCCTAGAATTGAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>292</pcr_amplicon_size>
		<canonical_amplicon>GGCTCTAGAATCTGGATATTGAATTTTCTAAAACTAATTTATTTTGACACTTATTGCTTTGTATTATTTATATGCATTTAAAATTCGGTTCCTGCAATTTCGGTTCCTGCAAAAGATAACTAGAAGTGATCAACTGATAAAATATTTTTGAAGTTATGATAAACATTTTGTCAGTTGACCACTTTTCTCATCTTCGACAGGAACCGAGATATATGAGCTCATAGTTGACTGTTTGGGTGGCTATCTATCAGAGTTATACGGTATTCTTGAACTTTCAATTCTAGGAAGTCCA</canonical_amplicon>
		<polymorphic_amplicon>GGCTCTAGAATCTGGATATTGAATTTTCTAAAACTAATTTATTTTGACACTTATTGCTTTGTATTATTWATATGCATTTAAAATTCGGTTCCTGCAATTTCGGTTCCTGCAAAAGATAACTAGAAGTGATCAACTGATAAAATATTTTTGAAGTTATGATAAACATTTTGTCAGTTGACCACTTTTCTCATCTTCGACAGGAACCGAGATATATGAGCTCATAGTTGACTGTTTGGGTGGCTATCTATCAGAGTTATACGGTATTCTTGAACTTTCAATTCTAGGAAGTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25984</snp_id>
        <super_contig>c001900764.Contig4</super_contig>
        <contig_pos>276114</contig_pos>
        <strand>+</strand>
        <context>TATTATTWAT[A/C]TGCATTTAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTTTCTAAAACTAATTTATTTTGACACTTATTGCTTTGTATTATTTAT</left_flank>
        <right_flank>TGCATTTAAAATTCGGTTCCTGCAATTTCGGTTCCTGCAAAAGATAACTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATATCCAGCTCATGAAAACTATTATAAATGTGGTTGCACTCTTCAATTTGTTATCAACAGCATCTGCTGCTCTTGACAACTTTAAATTCTCCCAATCATTTTTGAATGTAGCTGCTACTTTTTTCAACTTTTGCGTCCTCACGTAAGGCTTCAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAATATTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGTGCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGTAGATATAGTGAAAACTATAATAATTATTATTTGAATTTCAGATGAGAATTTTAAATCCAGTATCTCCTTTTCCCGAAGCACTAAACGAAAAACCGTGCCAAATGGCGGCCAAAGAGACGGATGAATATTTCACACAGCTTCGGAAACAGTGGCTCTAGAATCTGGATATTGAATTTTCTAAAACTAATTTATTTTGACACTTATTGCTTTGTATTATTTATATGCATTTAAAATTCGGTTCCTGCAATTTCGGTTCCTGCAAAAGATAACTAGAAGTGATCAACTGATAAAATATTTTTGAAGTTATGATAAACATTTTGTCAGTTGACCACTTTTCTCATCTTCGACAGGAACCGAGATATATGAGCTCATAGTTGACTGTTTGGGTGGCTATCTATCAGAGTTATACGGTATTCTTGAACTTTCAATTCTAGGAAGTCCAGAATTGAATATCATTCTAGAATTGAATACCATTTTCTTGATGTATTTGGAAAAGCCCCGAACATTCTAGAACTTTCTAGAAAATCCTACTATCATACAAAGAAAAATTCACTGTCGTAAAACCTGTAATAGAAGGGCTCCCTAACTTTTAGCTTTAATCCAATTTTTCTCGATTCCTGTCAAAGATGTGAAAAAGTTGTCAATTGATAAATTGTTTATCATAACATCAGAAGCGTTTTTTCATTTGACACATTTTAAGGTTTTGCATAAGAATGGTGATA</canonical>
            <polymorphic>AATATCCAGCTCATGAAAACTATTATAAATGTGGTTGCACTCTTCAATTTGTTATCAACAGCATCTGCTGCTCTTGACAACTTTAAATTCTCCCAATCATTTTTGAATGTAGCTGCTACTTTTTTCAACTTTTGCGTCCTCACGTAAGGCTTCAAAAGTCTCCAAAAAAGAGAAATTGTATAAAAATATTTTTCCAGATATGGATCTCTTGTTTTCTTTCTGTTTTATTATTTGGTGCCCCAGTTCAGACTTGCGCTGAAATCAACTTTTACAAAGGTAGATATAGTGAAAACTATAATAATTATTATTTGAATTTCAGATGAGAATTTTAAATCCAGTATCTCCTTTTCCCGAAGCACTAAACGAAAAACCGTGCCAAATGGCGGCCAAAGAGACGGATGAATATTTCACACAGCTTCGGAAACAGTGGCTCTAGAATCTGGATATTGAATTTTCTAAAACTAATTTATTTTGACACTTATTGCTTTGTATTATTTATMTGCATTTAAAATTCGGTTCCTGCAATTTCGGTTCCTGCAAAAGATAACTAGAAGTGATCAACTGATAAAATATTTTTGAAGTTATGATAAACATTTTGTCAGTTGACCACTTTTCTCATCTTCGACAGGAACCGAGATATATGAGCTCATAGTTGACTGTTTGGGTGGCTATCTATCAGAGTTATACGGTATTCTTGAACTTTCAATTCTAGGAAGTCCAGAATTGAATATCATTCTAGAATTGAATACCATTTTCTTGATGTATTTGGAAAAGCCCCGAACATTCTAGAACTTTCTAGAAAATCCTACTATCATACAAAGAAAAATTCACTGTCGTAAAACCTGTAATAGAAGGGCTCCCTAACTTTTAGCTTTAATCCAATTTTTCTCGATTCCTGTCAAAGATGTGAAAAAGTTGTCAATTGATAAATTGTTTATCATAACATCAGAAGCGTTTTTTCATTTGACACATTTTAAGGTTTTGCATAAGAATGGTGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATGCAT</site>
                <isoschizomers>
                    <enzyme>BfrBI</enzyme>
                    <enzyme>EcoT22I</enzyme>
                    <enzyme>Mph1103I</enzyme>
                    <enzyme>NsiI</enzyme>
                    <enzyme>Ppu10I</enzyme>
                    <enzyme>Zsp2I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCTCTAGAATCTGGATATTGA</pcr_primer_p1>
		<pcr_primer_p2>TGGACTTCCTAGAATTGAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>292</pcr_amplicon_size>
		<canonical_amplicon>GGCTCTAGAATCTGGATATTGAATTTTCTAAAACTAATTTATTTTGACACTTATTGCTTTGTATTATTTATATGCATTTAAAATTCGGTTCCTGCAATTTCGGTTCCTGCAAAAGATAACTAGAAGTGATCAACTGATAAAATATTTTTGAAGTTATGATAAACATTTTGTCAGTTGACCACTTTTCTCATCTTCGACAGGAACCGAGATATATGAGCTCATAGTTGACTGTTTGGGTGGCTATCTATCAGAGTTATACGGTATTCTTGAACTTTCAATTCTAGGAAGTCCA</canonical_amplicon>
		<polymorphic_amplicon>GGCTCTAGAATCTGGATATTGAATTTTCTAAAACTAATTTATTTTGACACTTATTGCTTTGTATTATTTATMTGCATTTAAAATTCGGTTCCTGCAATTTCGGTTCCTGCAAAAGATAACTAGAAGTGATCAACTGATAAAATATTTTTGAAGTTATGATAAACATTTTGTCAGTTGACCACTTTTCTCATCTTCGACAGGAACCGAGATATATGAGCTCATAGTTGACTGTTTGGGTGGCTATCTATCAGAGTTATACGGTATTCTTGAACTTTCAATTCTAGGAAGTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25985</snp_id>
        <super_contig>c002000157.Contig3</super_contig>
        <contig_pos>17305</contig_pos>
        <strand></strand>
        <context>TTTGAAGCAC[G/T]TGCCTTGTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGTGCCTTGAATTTTTGAGGCACGTAACGTGCCTTGTATTTTTGAAGCAC</left_flank>
        <right_flank>TGCCTTGTATTTTTGAGATTCCAACTTTTTTTAGATTCCAACATTTAGGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACGACGGAAGGTCGTAATCAATAAATAAATAAATAAATAAATAGAAGGCCACCCGGACCGTCCACTTTAAGTCTAAATATCTAACTTATTTTGGAAGGTATCAAAAAGTAGTCAACTAATAAAAAGGTTATCATAATATCAGCAACATTTTATTAGTTAACCACTTTTTGATATCTCTCATAGAAAATTAGATAAATGAGCTCCAATTTGGCGAATTGGGTGACGTTCTATCAGAGTGTTTACGGTATTACATATTTCAATAATGGGAAAAAAACTGATCAAATTTTTAATTCAAAACTGTTTGTTCCATTCGCTAAAAACAAGTTTAGGTCTTCTATAGGCCAATCAGAAGAATCCGGGGGAACATTATTTATTGGAGTTATTAACATTTTACAGACATAAAAAAAATCAATCTATTTTTTCATGTACTAAAATACAAGGCACGTAACGTGCCTTGAATTTTTGAGGCACGTAACGTGCCTTGTATTTTTGAAGCACGTGCCTTGTATTTTTGAGATTCCAACTTTTTTTAGATTCCAACATTTAGGTTATGACCTAGATTTCAATTTCTGGGTCATGACCTAGGTTTAGATTTTTTTTTCAAAAGACTTCGACAACTCCGAAAACGAGGAAGAAATCGACACAAAGGATGAAACCATTAGAGTAGTCAACGAGATGAAGACTCATCAGATCCCACAGAAAACATTTACCGAAAGAATATTATGTCGCAGTCCGGGAACTCTTTCCGACCTGCTTCGCAATCCCAAACCATGGAATATGCTGAAATCCGGACAGGAAACATTCCGTCGAATGCATAAATGATTGCAGCAACCACTTACAGCCAGACTCAGAATTCTAGATTCTAGAAATTCTATGTCACCAGAAGAAGTTGCTGAAGCAAAAGAAGTGCTTCCATCAACGCCAGTTCCAAGTGGATCTTGAAAAAGGTACAAACTGTTTATTTAATTTCAATTTATCAAAATTTAAATTTCAAACGTA</canonical>
            <polymorphic>CACGACGGAAGGTCGTAATCAATAAATAAATAAATAAATAAATAGAAGGCCACCCGGACCGTCCACTTTAAGTCTAAATATCTAACTTATTTTGGAAGGTATCAAAAAGTAGTCAACTAATAAAAAGGTTATCATAATATCAGCAACATTTTATTAGTTAACCACTTTTTGATATCTCTCATAGAAAATTAGATAAATGAGCTCCAATTTGGCGAATTGGGTGACGTTCTATCAGAGTGTTTACGGTATTACATATTTCAATAATGGGAAAAAAACTGATCAAATTTTTAATTCAAAACTGTTTGTTCCATTCGCTAAAAACAAGTTTAGGTCTTCTATAGGCCAATCAGAAGAATCCGGGGGAACATTATTTATTGGAGTTATTAACATTTTACAGACATAAAAAAAATCAATCTATTTTTTCATGTACTAAAATACAAGGCACGTAACGTGCCTTGAATTTTTGAGGCACGTAACGTGCCTTGTATTTTTGAAGCACKTGCCTTGTATTTTTGAGATTCCAACTTTTTTTAGATTCCAACATTTAGGTTATGACCTAGATTTCAATTTCTGGGTCATGACCTAGGTTTAGATTTTTTTTTCAAAAGACTTCGACAACTCCGAAAACGAGGAAGAAATCGACACAAAGGATGAAACCATTAGAGTAGTCAACGAGATGAAGACTCATCAGATCCCACAGAAAACATTTACCGAAAGAATATTATGTCGCAGTCCGGGAACTCTTTCCGACCTGCTTCGCAATCCCAAACCATGGAATATGCTGAAATCCGGACAGGAAACATTCCGTCGAATGCATAAATGATTGCAGCAACCACTTACAGCCAGACTCAGAATTCTAGATTCTAGAAATTCTATGTCACCAGAAGAAGTTGCTGAAGCAAAAGAAGTGCTTCCATCAACGCCAGTTCCAAGTGGATCTTGAAAAAGGTACAAACTGTTTATTTAATTTCAATTTATCAAAATTTAAATTTCAAACGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACGTG</site>
                <isoschizomers>
                    <enzyme>AcvI</enzyme>
                    <enzyme>BbrPI</enzyme>
                    <enzyme>Eco72I</enzyme>
                    <enzyme>PmaCI</enzyme>
                    <enzyme>PmlI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 445 27 27</canonical_bands>
                <polymorphic_bands>528 445 27</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>205 142 138 99 65 59 53 50 45 30 25 18 18 16 13 9 9 4 2</canonical_bands>
                <polymorphic_bands>205 146 138 99 65 59 53 50 45 30 25 18 18 16 13 9 9 2</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>498 224 220 22 22 5 5 4</canonical_bands>
                <polymorphic_bands>520 224 220 22 5 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAACGTGCCTTGAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGAGTCTTCATCTCGTTGACTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GTAACGTGCCTTGAATTTTTGAGGCACGTAACGTGCCTTGTATTTTTGAAGCACGTGCCTTGTATTTTTGAGATTCCAACTTTTTTTAGATTCCAACATTTAGGTTATGACCTAGATTTCAATTTCTGGGTCATGACCTAGGTTTAGATTTTTTTTTCAAAAGACTTCGACAACTCCGAAAACGAGGAAGAAATCGACACAAAGGATGAAACCATTAGAGTAGTCAACGAGATGAAGACTCAT</canonical_amplicon>
		<polymorphic_amplicon>GTAACGTGCCTTGAATTTTTGAGGCACGTAACGTGCCTTGTATTTTTGAAGCACKTGCCTTGTATTTTTGAGATTCCAACTTTTTTTAGATTCCAACATTTAGGTTATGACCTAGATTTCAATTTCTGGGTCATGACCTAGGTTTAGATTTTTTTTTCAAAAGACTTCGACAACTCCGAAAACGAGGAAGAAATCGACACAAAGGATGAAACCATTAGAGTAGTCAACGAGATGAAGACTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25986</snp_id>
        <super_contig>c002000157.Contig3</super_contig>
        <contig_pos>17348</contig_pos>
        <strand></strand>
        <context>agattccaac[A/T]tttaggttat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAGCACGTGCCTTGTATTTTTGAGATTCCAACTTTTTTTAGATTCCAAC</left_flank>
        <right_flank>TTTAGGTTATGACCTAGATTTCAATTTCTGGGTCATGACCTAGGTTTAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAGGCCACCCGGACCGTCCACTTTAAGTCTAAATATCTAACTTATTTTGGAAGGTATCAAAAAGTAGTCAACTAATAAAAAGGTTATCATAATATCAGCAACATTTTATTAGTTAACCACTTTTTGATATCTCTCATAGAAAATTAGATAAATGAGCTCCAATTTGGCGAATTGGGTGACGTTCTATCAGAGTGTTTACGGTATTACATATTTCAATAATGGGAAAAAAACTGATCAAATTTTTAATTCAAAACTGTTTGTTCCATTCGCTAAAAACAAGTTTAGGTCTTCTATAGGCCAATCAGAAGAATCCGGGGGAACATTATTTATTGGAGTTATTAACATTTTACAGACATAAAAAAAATCAATCTATTTTTTCATGTACTAAAATACAAGGCACGTAACGTGCCTTGAATTTTTGAGGCACGTAACGTGCCTTGTATTTTTGAAGCACGTGCCTTGTATTTTTGAGATTCCAACTTTTTTTAGATTCCAACATTTAGGTTATGACCTAGATTTCAATTTCTGGGTCATGACCTAGGTTTAGATTTTTTTTTCAAAAGACTTCGACAACTCCGAAAACGAGGAAGAAATCGACACAAAGGATGAAACCATTAGAGTAGTCAACGAGATGAAGACTCATCAGATCCCACAGAAAACATTTACCGAAAGAATATTATGTCGCAGTCCGGGAACTCTTTCCGACCTGCTTCGCAATCCCAAACCATGGAATATGCTGAAATCCGGACAGGAAACATTCCGTCGAATGCATAAATGATTGCAGCAACCACTTACAGCCAGACTCAGAATTCTAGATTCTAGAAATTCTATGTCACCAGAAGAAGTTGCTGAAGCAAAAGAAGTGCTTCCATCAACGCCAGTTCCAAGTGGATCTTGAAAAAGGTACAAACTGTTTATTTAATTTCAATTTATCAAAATTTAAATTTCAAACGTATGAATTTCGATGAGAGTGAGCCAACTGCCAAAGTTTCTCGTTT</canonical>
            <polymorphic>AGAAGGCCACCCGGACCGTCCACTTTAAGTCTAAATATCTAACTTATTTTGGAAGGTATCAAAAAGTAGTCAACTAATAAAAAGGTTATCATAATATCAGCAACATTTTATTAGTTAACCACTTTTTGATATCTCTCATAGAAAATTAGATAAATGAGCTCCAATTTGGCGAATTGGGTGACGTTCTATCAGAGTGTTTACGGTATTACATATTTCAATAATGGGAAAAAAACTGATCAAATTTTTAATTCAAAACTGTTTGTTCCATTCGCTAAAAACAAGTTTAGGTCTTCTATAGGCCAATCAGAAGAATCCGGGGGAACATTATTTATTGGAGTTATTAACATTTTACAGACATAAAAAAAATCAATCTATTTTTTCATGTACTAAAATACAAGGCACGTAACGTGCCTTGAATTTTTGAGGCACGTAACGTGCCTTGTATTTTTGAAGCACGTGCCTTGTATTTTTGAGATTCCAACTTTTTTTAGATTCCAACWTTTAGGTTATGACCTAGATTTCAATTTCTGGGTCATGACCTAGGTTTAGATTTTTTTTTCAAAAGACTTCGACAACTCCGAAAACGAGGAAGAAATCGACACAAAGGATGAAACCATTAGAGTAGTCAACGAGATGAAGACTCATCAGATCCCACAGAAAACATTTACCGAAAGAATATTATGTCGCAGTCCGGGAACTCTTTCCGACCTGCTTCGCAATCCCAAACCATGGAATATGCTGAAATCCGGACAGGAAACATTCCGTCGAATGCATAAATGATTGCAGCAACCACTTACAGCCAGACTCAGAATTCTAGATTCTAGAAATTCTATGTCACCAGAAGAAGTTGCTGAAGCAAAAGAAGTGCTTCCATCAACGCCAGTTCCAAGTGGATCTTGAAAAAGGTACAAACTGTTTATTTAATTTCAATTTATCAAAATTTAAATTTCAAACGTATGAATTTCGATGAGAGTGAGCCAACTGCCAAAGTTTCTCGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAACGTGCCTTGTATTTTTG</pcr_primer_p1>
		<pcr_primer_p2>ATATTCTTTCGGTAAATGTTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAACGTGCCTTGTATTTTTGAAGCACGTGCCTTGTATTTTTGAGATTCCAACTTTTTTTAGATTCCAACATTTAGGTTATGACCTAGATTTCAATTTCTGGGTCATGACCTAGGTTTAGATTTTTTTTTCAAAAGACTTCGACAACTCCGAAAACGAGGAAGAAATCGACACAAAGGATGAAACCATTAGAGTAGTCAACGAGATGAAGACTCATCAGATCCCACAGAAAACATTTACCGAAAGAATAT</canonical_amplicon>
		<polymorphic_amplicon>GTAACGTGCCTTGTATTTTTGAAGCACGTGCCTTGTATTTTTGAGATTCCAACTTTTTTTAGATTCCAACWTTTAGGTTATGACCTAGATTTCAATTTCTGGGTCATGACCTAGGTTTAGATTTTTTTTTCAAAAGACTTCGACAACTCCGAAAACGAGGAAGAAATCGACACAAAGGATGAAACCATTAGAGTAGTCAACGAGATGAAGACTCATCAGATCCCACAGAAAACATTTACCGAAAGAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25987</snp_id>
        <super_contig>c002000157.Contig3</super_contig>
        <contig_pos>17461</contig_pos>
        <strand></strand>
        <context>AAAGGATGAA[A/G]CCATTAGAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGACTTCGACAACTCCGAAAACGAGGAAGAAATCGACACAAAGGATGAA</left_flank>
        <right_flank>CCATTAGAGTAGTCAACGAGATGAAGACTCATCAGATCCCACAGAAAACA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTAACCACTTTTTGATATCTCTCATAGAAAATTAGATAAATGAGCTCCAATTTGGCGAATTGGGTGACGTTCTATCAGAGTGTTTACGGTATTACATATTTCAATAATGGGAAAAAAACTGATCAAATTTTTAATTCAAAACTGTTTGTTCCATTCGCTAAAAACAAGTTTAGGTCTTCTATAGGCCAATCAGAAGAATCCGGGGGAACATTATTTATTGGAGTTATTAACATTTTACAGACATAAAAAAAATCAATCTATTTTTTCATGTACTAAAATACAAGGCACGTAACGTGCCTTGAATTTTTGAGGCACGTAACGTGCCTTGTATTTTTGAAGCACGTGCCTTGTATTTTTGAGATTCCAACTTTTTTTAGATTCCAACATTTAGGTTATGACCTAGATTTCAATTTCTGGGTCATGACCTAGGTTTAGATTTTTTTTTCAAAAGACTTCGACAACTCCGAAAACGAGGAAGAAATCGACACAAAGGATGAAACCATTAGAGTAGTCAACGAGATGAAGACTCATCAGATCCCACAGAAAACATTTACCGAAAGAATATTATGTCGCAGTCCGGGAACTCTTTCCGACCTGCTTCGCAATCCCAAACCATGGAATATGCTGAAATCCGGACAGGAAACATTCCGTCGAATGCATAAATGATTGCAGCAACCACTTACAGCCAGACTCAGAATTCTAGATTCTAGAAATTCTATGTCACCAGAAGAAGTTGCTGAAGCAAAAGAAGTGCTTCCATCAACGCCAGTTCCAAGTGGATCTTGAAAAAGGTACAAACTGTTTATTTAATTTCAATTTATCAAAATTTAAATTTCAAACGTATGAATTTCGATGAGAGTGAGCCAACTGCCAAAGTTTCTCGTTTTGTTTTCACTGCTCATCAGAAGCAGGCACTTCAATCGATATACAAAATTTCGCCACGCCCAACCCGTGAAATGCAACAATAGCTTGCCGATCGTCTTGAAATCAGTATGGAAA</canonical>
            <polymorphic>GTTAACCACTTTTTGATATCTCTCATAGAAAATTAGATAAATGAGCTCCAATTTGGCGAATTGGGTGACGTTCTATCAGAGTGTTTACGGTATTACATATTTCAATAATGGGAAAAAAACTGATCAAATTTTTAATTCAAAACTGTTTGTTCCATTCGCTAAAAACAAGTTTAGGTCTTCTATAGGCCAATCAGAAGAATCCGGGGGAACATTATTTATTGGAGTTATTAACATTTTACAGACATAAAAAAAATCAATCTATTTTTTCATGTACTAAAATACAAGGCACGTAACGTGCCTTGAATTTTTGAGGCACGTAACGTGCCTTGTATTTTTGAAGCACGTGCCTTGTATTTTTGAGATTCCAACTTTTTTTAGATTCCAACATTTAGGTTATGACCTAGATTTCAATTTCTGGGTCATGACCTAGGTTTAGATTTTTTTTTCAAAAGACTTCGACAACTCCGAAAACGAGGAAGAAATCGACACAAAGGATGAARCCATTAGAGTAGTCAACGAGATGAAGACTCATCAGATCCCACAGAAAACATTTACCGAAAGAATATTATGTCGCAGTCCGGGAACTCTTTCCGACCTGCTTCGCAATCCCAAACCATGGAATATGCTGAAATCCGGACAGGAAACATTCCGTCGAATGCATAAATGATTGCAGCAACCACTTACAGCCAGACTCAGAATTCTAGATTCTAGAAATTCTATGTCACCAGAAGAAGTTGCTGAAGCAAAAGAAGTGCTTCCATCAACGCCAGTTCCAAGTGGATCTTGAAAAAGGTACAAACTGTTTATTTAATTTCAATTTATCAAAATTTAAATTTCAAACGTATGAATTTCGATGAGAGTGAGCCAACTGCCAAAGTTTCTCGTTTTGTTTTCACTGCTCATCAGAAGCAGGCACTTCAATCGATATACAAAATTTCGCCACGCCCAACCCGTGAAATGCAACAATAGCTTGCCGATCGTCTTGAAATCAGTATGGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAACGTGCCTTGTATTTTTG</pcr_primer_p1>
		<pcr_primer_p2>ATATTCTTTCGGTAAATGTTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAACGTGCCTTGTATTTTTGAAGCACGTGCCTTGTATTTTTGAGATTCCAACTTTTTTTAGATTCCAACATTTAGGTTATGACCTAGATTTCAATTTCTGGGTCATGACCTAGGTTTAGATTTTTTTTTCAAAAGACTTCGACAACTCCGAAAACGAGGAAGAAATCGACACAAAGGATGAAACCATTAGAGTAGTCAACGAGATGAAGACTCATCAGATCCCACAGAAAACATTTACCGAAAGAATAT</canonical_amplicon>
		<polymorphic_amplicon>GTAACGTGCCTTGTATTTTTGAAGCACGTGCCTTGTATTTTTGAGATTCCAACTTTTTTTAGATTCCAACATTTAGGTTATGACCTAGATTTCAATTTCTGGGTCATGACCTAGGTTTAGATTTTTTTTTCAAAAGACTTCGACAACTCCGAAAACGAGGAAGAAATCGACACAAAGGATGAARCCATTAGAGTAGTCAACGAGATGAAGACTCATCAGATCCCACAGAAAACATTTACCGAAAGAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25988</snp_id>
        <super_contig>c002000157.Contig3</super_contig>
        <contig_pos>17574</contig_pos>
        <strand></strand>
        <context>GCAATCCCAA[A/G]CCATGGAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATTATGTCGCAGTCCGGGAACTCTTTCCGACCTGCTTCGCAATCCCAA</left_flank>
        <right_flank>CCATGGAATATGCTGAAATCCGGACAGGAAACATTCCGTCGAATGCATAA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAACTGATCAAATTTTTAATTCAAAACTGTTTGTTCCATTCGCTAAAAACAAGTTTAGGTCTTCTATAGGCCAATCAGAAGAATCCGGGGGAACATTATTTATTGGAGTTATTAACATTTTACAGACATAAAAAAAATCAATCTATTTTTTCATGTACTAAAATACAAGGCACGTAACGTGCCTTGAATTTTTGAGGCACGTAACGTGCCTTGTATTTTTGAAGCACGTGCCTTGTATTTTTGAGATTCCAACTTTTTTTAGATTCCAACATTTAGGTTATGACCTAGATTTCAATTTCTGGGTCATGACCTAGGTTTAGATTTTTTTTTCAAAAGACTTCGACAACTCCGAAAACGAGGAAGAAATCGACACAAAGGATGAAACCATTAGAGTAGTCAACGAGATGAAGACTCATCAGATCCCACAGAAAACATTTACCGAAAGAATATTATGTCGCAGTCCGGGAACTCTTTCCGACCTGCTTCGCAATCCCAAACCATGGAATATGCTGAAATCCGGACAGGAAACATTCCGTCGAATGCATAAATGATTGCAGCAACCACTTACAGCCAGACTCAGAATTCTAGATTCTAGAAATTCTATGTCACCAGAAGAAGTTGCTGAAGCAAAAGAAGTGCTTCCATCAACGCCAGTTCCAAGTGGATCTTGAAAAAGGTACAAACTGTTTATTTAATTTCAATTTATCAAAATTTAAATTTCAAACGTATGAATTTCGATGAGAGTGAGCCAACTGCCAAAGTTTCTCGTTTTGTTTTCACTGCTCATCAGAAGCAGGCACTTCAATCGATATACAAAATTTCGCCACGCCCAACCCGTGAAATGCAACAATAGCTTGCCGATCGTCTTGAAATCAGTATGGAAACAGTGGAAAACTTTTTCATGAATGCTCGTCGACGTGATCGCTATCATCAAGTGACCACTCAAGTTAAAATCATCAATGAGCCCATTCCACAGCAACAGGAGGCGGAAATCTTG</canonical>
            <polymorphic>AAAAAACTGATCAAATTTTTAATTCAAAACTGTTTGTTCCATTCGCTAAAAACAAGTTTAGGTCTTCTATAGGCCAATCAGAAGAATCCGGGGGAACATTATTTATTGGAGTTATTAACATTTTACAGACATAAAAAAAATCAATCTATTTTTTCATGTACTAAAATACAAGGCACGTAACGTGCCTTGAATTTTTGAGGCACGTAACGTGCCTTGTATTTTTGAAGCACGTGCCTTGTATTTTTGAGATTCCAACTTTTTTTAGATTCCAACATTTAGGTTATGACCTAGATTTCAATTTCTGGGTCATGACCTAGGTTTAGATTTTTTTTTCAAAAGACTTCGACAACTCCGAAAACGAGGAAGAAATCGACACAAAGGATGAAACCATTAGAGTAGTCAACGAGATGAAGACTCATCAGATCCCACAGAAAACATTTACCGAAAGAATATTATGTCGCAGTCCGGGAACTCTTTCCGACCTGCTTCGCAATCCCAARCCATGGAATATGCTGAAATCCGGACAGGAAACATTCCGTCGAATGCATAAATGATTGCAGCAACCACTTACAGCCAGACTCAGAATTCTAGATTCTAGAAATTCTATGTCACCAGAAGAAGTTGCTGAAGCAAAAGAAGTGCTTCCATCAACGCCAGTTCCAAGTGGATCTTGAAAAAGGTACAAACTGTTTATTTAATTTCAATTTATCAAAATTTAAATTTCAAACGTATGAATTTCGATGAGAGTGAGCCAACTGCCAAAGTTTCTCGTTTTGTTTTCACTGCTCATCAGAAGCAGGCACTTCAATCGATATACAAAATTTCGCCACGCCCAACCCGTGAAATGCAACAATAGCTTGCCGATCGTCTTGAAATCAGTATGGAAACAGTGGAAAACTTTTTCATGAATGCTCGTCGACGTGATCGCTATCATCAAGTGACCACTCAAGTTAAAATCATCAATGAGCCCATTCCACAGCAACAGGAGGCGGAAATCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAATATTATGTCGCAGTCC</pcr_primer_p1>
		<pcr_primer_p2>AACAGTTTGTACCTTTTTCAAGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAGAATATTATGTCGCAGTCCGGGAACTCTTTCCGACCTGCTTCGCAATCCCAAACCATGGAATATGCTGAAATCCGGACAGGAAACATTCCGTCGAATGCATAAATGATTGCAGCAACCACTTACAGCCAGACTCAGAATTCTAGATTCTAGAAATTCTATGTCACCAGAAGAAGTTGCTGAAGCAAAAGAAGTGCTTCCATCAACGCCAGTTCCAAGTGGATCTTGAAAAAGGTACAAACTGTT</canonical_amplicon>
		<polymorphic_amplicon>AAAGAATATTATGTCGCAGTCCGGGAACTCTTTCCGACCTGCTTCGCAATCCCAARCCATGGAATATGCTGAAATCCGGACAGGAAACATTCCGTCGAATGCATAAATGATTGCAGCAACCACTTACAGCCAGACTCAGAATTCTAGATTCTAGAAATTCTATGTCACCAGAAGAAGTTGCTGAAGCAAAAGAAGTGCTTCCATCAACGCCAGTTCCAAGTGGATCTTGAAAAAGGTACAAACTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25989</snp_id>
        <super_contig>c002000444.Contig4</super_contig>
        <contig_pos>436</contig_pos>
        <strand></strand>
        <context>CCCCGAAAGG[G/A]GACGTTCCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CATAGTTGACCAATTTTTAATTTCTTTAGATTTTTTGTCTCCCCGAAAGG</left_flank>
        <right_flank>GACGTTCCAAAATTTGTTATCAACTCTAAATTTCTTTAGGTCGAAAACGC</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTCAAACTTGGGTAATTAAACCGACCTGGCAAAAATATAGAAATTTTTTATTCAAAACCGAAAAAAACTAAAAATCAATATCAGGAATCACAATTCATATTTATACAATTGAATATAAAAAATCAAAAAGCTTACAACATCCAGGATTCCCAGGCCGTCTCCGATCCAAGTACTAACTGGACTCAACGTTGCTTAACTTGCCAGATCGGACGGGATGGCGTGCATTCAACGTGATATGGTCGTAAGCATTTTTCTCACCTCCTTTTCTCATATATAAATTTTCTCTTCCTGTGTAAGAAAAAAATAACGTCGATGAAAATTGAGAATTTGAAAATTGAAAAAAAAGAGGAATTTTTCAAAATTTCAAAAAATCATAACTCGGTTCATAGTTGACCAATTTTTAATTTCTTTAGATTTTTTGTCTCCCCGAAAGGGGACGTTCCAAAATTTGTTATCAACTCTAAATTTCTTTAGGTCGAAAACGCAAAGTACCTCAAACTTGGGTAATTAAACCAAAGCTGAAAGCGTTGTCTCCCCTCTTCACATTTCCCAGCACCCGACACCGATCGAGGCCCGCGTTGGCCACTATGCTACTGTGTATTATCTGAGAATTGGGTACAACACTCCGCCCGTCTACCTCAAACTTGGGTAATTAAACCGACCTGGCAAAAATGATGACAAATACCTATATTAATACTCAAACTTGGGTAATTAAACCGACCTGGCAAAAATATAGAAATTTTTTATTCAAAACCGAAAAAAACTAAAAATCAATATCAGGAATCACAATTCATATTTATACAATTGAATATAAAAAATCAAAAAGCTTACAACATCCAGGATTCCCAGGCCGTCTCCGATCCAAGTACTAACTGGACTCAACGTTGCTTAACTTGCCAGATCGGACGGGATGGCGTGCATTCAACGTGATATGGTCGTAAGCATTTTTCTCACCTCCTTTTCTCATATATAAATTTTCTCTTCCTGTGTAAGAAAAAA</canonical>
            <polymorphic>CCTCAAACTTGGGTAATTAAACCGACCTGGCAAAAATATAGAAATTTTTTATTCAAAACCGAAAAAAACTAAAAATCAATATCAGGAATCACAATTCATATTTATACAATTGAATATAAAAAATCAAAAAGCTTACAACATCCAGGATTCCCAGGCCGTCTCCGATCCAAGTACTAACTGGACTCAACGTTGCTTAACTTGCCAGATCGGACGGGATGGCGTGCATTCAACGTGATATGGTCGTAAGCATTTTTCTCACCTCCTTTTCTCATATATAAATTTTCTCTTCCTGTGTAAGAAAAAAATAACGTCGATGAAAATTGAGAATTTGAAAATTGAAAAAAAAGAGGAATTTTTCAAAATTTCAAAAAATCATAACTCGGTTCATAGTTGACCAATTTTTAATTTCTTTAGATTTTTTGTCTCCCCGAAAGGRGACGTTCCAAAATTTGTTATCAACTCTAAATTTCTTTAGGTCGAAAACGCAAAGTACCTCAAACTTGGGTAATTAAACCAAAGCTGAAAGCGTTGTCTCCCCTCTTCACATTTCCCAGCACCCGACACCGATCGAGGCCCGCGTTGGCCACTATGCTACTGTGTATTATCTGAGAATTGGGTACAACACTCCGCCCGTCTACCTCAAACTTGGGTAATTAAACCGACCTGGCAAAAATGATGACAAATACCTATATTAATACTCAAACTTGGGTAATTAAACCGACCTGGCAAAAATATAGAAATTTTTTATTCAAAACCGAAAAAAACTAAAAATCAATATCAGGAATCACAATTCATATTTATACAATTGAATATAAAAAATCAAAAAGCTTACAACATCCAGGATTCCCAGGCCGTCTCCGATCCAAGTACTAACTGGACTCAACGTTGCTTAACTTGCCAGATCGGACGGGATGGCGTGCATTCAACGTGATATGGTCGTAAGCATTTTTCTCACCTCCTTTTCTCATATATAAATTTTCTCTTCCTGTGTAAGAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>568 432</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCATAACTCGGTTCATAGTTG</pcr_primer_p1>
		<pcr_primer_p2>ACCCAATTCTCAGATAATACACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATCATAACTCGGTTCATAGTTGACCAATTTTTAATTTCTTTAGATTTTTTGTCTCCCCGAAAGGRGACGTTCCAAAATTTGTTATCAACTCTAAATTTCTTTAGGTCGAAAACGCAAAGTACCTCAAAGTTGGGTAATTAAACCAAAGCTGAAAGCGTTGTCTCCCCTCTTCACATTTCCCAGCACCCGACACCGATCGAGGCCCGCGTTGGCCACTATGCTACTGTGTATTATCTGAGAATTGGGT</canonical_amplicon>
		<polymorphic_amplicon>AATCATAACTCGGTTCATAGTTGACCAATTTTTAATTTCTTTAGATTTTTTGTCTCCCCGAAAGGRGACGTTCCAAAATTTGTTATCAACTCTAAATTTCTTTAGGTCGAAAACGCAAAGTACCTCAAACTTGGGTAATTAAACCAAAGCTGAAAGCGTTGTCTCCCCTCTTCACATTTCCCAGCACCCGACACCGATCGAGGCCCGCGTTGGCCACTATGCTACTGTGTATTATCTGAGAATTGGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25990</snp_id>
        <super_contig>c002000444.Contig4</super_contig>
        <contig_pos>491</contig_pos>
        <strand></strand>
        <context>AAACGCAAAG[T/A]ACCTCAAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTCCAAAATTTGTTATCAACTCTAAATTTCTTTAGGTCGAAAACGCAAAG</left_flank>
        <right_flank>ACCTCAAACTTGGGTAATTAAACCAAAGCTGAAAGCGTTGTCTCCCCTCT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTCAAACTTGGGTAATTAAACCGACCTGGCAAAAATATAGAAATTTTTTATTCAAAACCGAAAAAAACTAAAAATCAATATCAGGAATCACAATTCATATTTATACAATTGAATATAAAAAATCAAAAAGCTTACAACATCCAGGATTCCCAGGCCGTCTCCGATCCAAGTACTAACTGGACTCAACGTTGCTTAACTTGCCAGATCGGACGGGATGGCGTGCATTCAACGTGATATGGTCGTAAGCATTTTTCTCACCTCCTTTTCTCATATATAAATTTTCTCTTCCTGTGTAAGAAAAAAATAACGTCGATGAAAATTGAGAATTTGAAAATTGAAAAAAAAGAGGAATTTTTCAAAATTTCAAAAAATCATAACTCGGTTCATAGTTGACCAATTTTTAATTTCTTTAGATTTTTTGTCTCCCCGAAAGGGGACGTTCCAAAATTTGTTATCAACTCTAAATTTCTTTAGGTCGAAAACGCAAAGTACCTCAAACTTGGGTAATTAAACCAAAGCTGAAAGCGTTGTCTCCCCTCTTCACATTTCCCAGCACCCGACACCGATCGAGGCCCGCGTTGGCCACTATGCTACTGTGTATTATCTGAGAATTGGGTACAACACTCCGCCCGTCTACCTCAAACTTGGGTAATTAAACCGACCTGGCAAAAATGATGACAAATACCTATATTAATACTCAAACTTGGGTAATTAAACCGACCTGGCAAAAATATAGAAATTTTTTATTCAAAACCGAAAAAAACTAAAAATCAATATCAGGAATCACAATTCATATTTATACAATTGAATATAAAAAATCAAAAAGCTTACAACATCCAGGATTCCCAGGCCGTCTCCGATCCAAGTACTAACTGGACTCAACGTTGCTTAACTTGCCAGATCGGACGGGATGGCGTGCATTCAACGTGATATGGTCGTAAGCATTTTTCTCACCTCCTTTTCTCATATATAAATTTTCTCTTCCTGTGTAAGAAAAAA</canonical>
            <polymorphic>CCTCAAACTTGGGTAATTAAACCGACCTGGCAAAAATATAGAAATTTTTTATTCAAAACCGAAAAAAACTAAAAATCAATATCAGGAATCACAATTCATATTTATACAATTGAATATAAAAAATCAAAAAGCTTACAACATCCAGGATTCCCAGGCCGTCTCCGATCCAAGTACTAACTGGACTCAACGTTGCTTAACTTGCCAGATCGGACGGGATGGCGTGCATTCAACGTGATATGGTCGTAAGCATTTTTCTCACCTCCTTTTCTCATATATAAATTTTCTCTTCCTGTGTAAGAAAAAAATAACGTCGATGAAAATTGAGAATTTGAAAATTGAAAAAAAAGAGGAATTTTTCAAAATTTCAAAAAATCATAACTCGGTTCATAGTTGACCAATTTTTAATTTCTTTAGATTTTTTGTCTCCCCGAAAGGGGACGTTCCAAAATTTGTTATCAACTCTAAATTTCTTTAGGTCGAAAACGCAAAGWACCTCAAACTTGGGTAATTAAACCAAAGCTGAAAGCGTTGTCTCCCCTCTTCACATTTCCCAGCACCCGACACCGATCGAGGCCCGCGTTGGCCACTATGCTACTGTGTATTATCTGAGAATTGGGTACAACACTCCGCCCGTCTACCTCAAACTTGGGTAATTAAACCGACCTGGCAAAAATGATGACAAATACCTATATTAATACTCAAACTTGGGTAATTAAACCGACCTGGCAAAAATATAGAAATTTTTTATTCAAAACCGAAAAAAACTAAAAATCAATATCAGGAATCACAATTCATATTTATACAATTGAATATAAAAAATCAAAAAGCTTACAACATCCAGGATTCCCAGGCCGTCTCCGATCCAAGTACTAACTGGACTCAACGTTGCTTAACTTGCCAGATCGGACGGGATGGCGTGCATTCAACGTGATATGGTCGTAAGCATTTTTCTCACCTCCTTTTCTCATATATAAATTTTCTCTTCCTGTGTAAGAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>319 250 172 132 127</canonical_bands>
                <polymorphic_bands>446 250 172 132</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCATAACTCGGTTCATAGTTG</pcr_primer_p1>
		<pcr_primer_p2>ACCCAATTCTCAGATAATACACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATCATAACTCGGTTCATAGTTGACCAATTTTTAATTTCTTTAGATTTTTTGTCTCCCCGAAAGGGGACGTTCCAAAATTTGTTATCAACTCTAAATTTCTTTAGGTCGAAAACGCAAAGWACCTCAAATTTGGGTAATTAAACCAAAGCTGAAAGCGTTGTCTCCCCTCTTCACATTTCCCAGCACCCGACACCGATCGAGGCCCGCGTTGGCCACTATGCTACTGTGTATTATCTGAGAATTGGGT</canonical_amplicon>
		<polymorphic_amplicon>AATCATAACTCGGTTCATAGTTGACCAATTTTTAATTTCTTTAGATTTTTTGTCTCCCCGAAAGGGGACGTTCCAAAATTTGTTATCAACTCTAAATTTCTTTAGGTCGAAAACGCAAAGWACCTCAAACTTGGGTAATTAAACCAAAGCTGAAAGCGTTGTCTCCCCTCTTCACATTTCCCAGCACCCGACACCGATCGAGGCCCGCGTTGGCCACTATGCTACTGTGTATTATCTGAGAATTGGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25991</snp_id>
        <super_contig>c002000444.Contig4</super_contig>
        <contig_pos>1431</contig_pos>
        <strand></strand>
        <context>TGGATCTCCT[T/A]CATACCAATC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATAATTATACTTCACTTGAACAGTCATTCTCCCATCTATTGGATCTCCT</left_flank>
        <right_flank>CATACCAATCATGATGACTGAATTCTTTGACTCCACGTGGAACATTTGTC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGGTCGTAAGCATTTTTCTCACCTCCTTTTCTCATATATAAATTTTCTCTTCCTGTGTAAGAAAAAACCTTTCTCCAGGTATAGTACAGCCATTCCTGATGATATTGGACAGTTTTCAAATACTGGGAAACCAGGGTGCATCATTTATCTACCTATTTCAGGTTACTGCGTTGGTTTTCATTACGTCTTGATAGAGATATTAACGTTTTTCTGAATTCGTAGGTTTTCTGTTTTGGTATCCACGAGAAAGATCTCAAATATTTAGCCGGGGTAGTTCTTGTTACATTTTTGCCGGAAATTGATTCTTAGCGAGTTATAGAGCTTTGAAGATTTTCAAACGATAATGGAGTTCTTCAATCTCCAAAATATATAACCTACACAATAAAACAACCTACACAATAAAAAAGAAATAAAAATCAAACCAAAAAAGAAATCAAAACAATAATCAATAATTATACTTCACTTGAACAGTCATTCTCCCATCTATTGGATCTCCTTCATACCAATCATGATGACTGAATTCTTTGACTCCACGTGGAACATTTGTCTATTGAATGATAATCTGATGTTTCTCAATGACATTCTGATTGAATACAAAACTTGCGCAATTGTTAAACGTATGAAAATTATCCGGAGGTCCCAGTGTCGTCCTCGGCGAAATGTCTGTGTGAATTCGAAAACGTGATTCTGAGTGCCATATGACGGATCGAGTCATTCGGGTTCATCATTCTATTCTTTTGATAGAACATGTATGGAGCATTAAATACCATACATCTCGGTTGGATTCTGATCTCTCCAAGACCACCGGAAAAGCTTGAAGGTCCTTCGACATCGACGTTATCTCCCGCGATGATGTCGGTTTTAATGATTCGGATGCCTGAAAACTGGAAAATATTATTAATTCAATTGTGATATTCTAATATCCATTGCGAAATACATTTGTATTTTTCTGAATCCGAAACTAGAGAATCTAACTTTGTTCAAATATTTTTCTTAAA</canonical>
            <polymorphic>TATGGTCGTAAGCATTTTTCTCACCTCCTTTTCTCATATATAAATTTTCTCTTCCTGTGTAAGAAAAAACCTTTCTCCAGGTATAGTACAGCCATTCCTGATGATATTGGACAGTTTTCAAATACTGGGAAACCAGGGTGCATCATTTATCTACCTATTTCAGGTTACTGCGTTGGTTTTCATTACGTCTTGATAGAGATATTAACGTTTTTCTGAATTCGTAGGTTTTCTGTTTTGGTATCCACGAGAAAGATCTCAAATATTTAGCCGGGGTAGTTCTTGTTACATTTTTGCCGGAAATTGATTCTTAGCGAGTTATAGAGCTTTGAAGATTTTCAAACGATAATGGAGTTCTTCAATCTCCAAAATATATAACCTACACAATAAAACAACCTACACAATAAAAAAGAAATAAAAATCAAACCAAAAAAGAAATCAAAACAATAATCAATAATTATACTTCACTTGAACAGTCATTCTCCCATCTATTGGATCTCCTWCATACCAATCATGATGACTGAATTCTTTGACTCCACGTGGAACATTTGTCTATTGAATGATAATCTGATGTTTCTCAATGACATTCTGATTGAATACAAAACTTGCGCAATTGTTAAACGTATGAAAATTATCCGGAGGTCCCAGTGTCGTCCTCGGCGAAATGTCTGTGTGAATTCGAAAACGTGATTCTGAGTGCCATATGACGGATCGAGTCATTCGGGTTCATCATTCTATTCTTTTGATAGAACATGTATGGAGCATTAAATACCATACATCTCGGTTGGATTCTGATCTCTCCAAGACCACCGGAAAAGCTTGAAGGTCCTTCGACATCGACGTTATCTCCCGCGATGATGTCGGTTTTAATGATTCGGATGCCTGAAAACTGGAAAATATTATTAATTCAATTGTGATATTCTAATATCCATTGCGAAATACATTTGTATTTTTCTGAATCCGAAACTAGAGAATCTAACTTTGTTCAAATATTTTTCTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAAACGATAATGGAGTTCTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCATTGAGAAACATCAGATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCAAACGATAATGGAGTTCTTCAATCTCCAAAATATATAACCTACACAATAAAACAACCTACACAATAAAAAAGAAATAAAAATCAAACCAAAAAAGAAATCAAAACAATAATCAATAATTATACTTCACTTGAACAGTCATTCTCCCATCTATTGGATCTCCTTCATACCAATCATGATGACTGAATTCTTTGACTCCACGTGGAACATTTGTCTATTGAATGATAATCTGATGTTTCTCAATGACAT</canonical_amplicon>
		<polymorphic_amplicon>TTCAAACGATAATGGAGTTCTTCAATCTCCAAAATATATAACCTACACAATAAAACAACCTACACAATAAAAAAGAAATAAAAATCAAACCAAAAAAGAAATCAAAACAATAATCAATAATTATACTTCACTTGAACAGTCATTCTCCCATCTATTGGATCTCCTWCATACCAATCATGATGACTGAATTCTTTGACTCCACGTGGAACATTTGTCTATTGAATGATAATCTGATGTTTCTCAATGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25992</snp_id>
        <super_contig>c002000444.Contig4</super_contig>
        <contig_pos>1527</contig_pos>
        <strand></strand>
        <context>CTGATTGAAT[A/C]CAAAACTTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGTCTATTGAATGATAATCTGATGTTTCTCAATGACATTCTGATTGAAT</left_flank>
        <right_flank>CAAAACTTGCGCAATTGTTAAACGTATGAAAATTATCCGGAGGTCCCAGT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGATGATATTGGACAGTTTTCAAATACTGGGAAACCAGGGTGCATCATTTATCTACCTATTTCAGGTTACTGCGTTGGTTTTCATTACGTCTTGATAGAGATATTAACGTTTTTCTGAATTCGTAGGTTTTCTGTTTTGGTATCCACGAGAAAGATCTCAAATATTTAGCCGGGGTAGTTCTTGTTACATTTTTGCCGGAAATTGATTCTTAGCGAGTTATAGAGCTTTGAAGATTTTCAAACGATAATGGAGTTCTTCAATCTCCAAAATATATAACCTACACAATAAAACAACCTACACAATAAAAAAGAAATAAAAATCAAACCAAAAAAGAAATCAAAACAATAATCAATAATTATACTTCACTTGAACAGTCATTCTCCCATCTATTGGATCTCCTTCATACCAATCATGATGACTGAATTCTTTGACTCCACGTGGAACATTTGTCTATTGAATGATAATCTGATGTTTCTCAATGACATTCTGATTGAATACAAAACTTGCGCAATTGTTAAACGTATGAAAATTATCCGGAGGTCCCAGTGTCGTCCTCGGCGAAATGTCTGTGTGAATTCGAAAACGTGATTCTGAGTGCCATATGACGGATCGAGTCATTCGGGTTCATCATTCTATTCTTTTGATAGAACATGTATGGAGCATTAAATACCATACATCTCGGTTGGATTCTGATCTCTCCAAGACCACCGGAAAAGCTTGAAGGTCCTTCGACATCGACGTTATCTCCCGCGATGATGTCGGTTTTAATGATTCGGATGCCTGAAAACTGGAAAATATTATTAATTCAATTGTGATATTCTAATATCCATTGCGAAATACATTTGTATTTTTCTGAATCCGAAACTAGAGAATCTAACTTTGTTCAAATATTTTTCTTAAAAATTTCATTGAAAACTCTATTGATAGTTCACCCTGACTGTCAGCTTTGAGCCAAATTTATCTTATGACAAATATTTGAAAAAAGTCAATTGACAAA</canonical>
            <polymorphic>CCTGATGATATTGGACAGTTTTCAAATACTGGGAAACCAGGGTGCATCATTTATCTACCTATTTCAGGTTACTGCGTTGGTTTTCATTACGTCTTGATAGAGATATTAACGTTTTTCTGAATTCGTAGGTTTTCTGTTTTGGTATCCACGAGAAAGATCTCAAATATTTAGCCGGGGTAGTTCTTGTTACATTTTTGCCGGAAATTGATTCTTAGCGAGTTATAGAGCTTTGAAGATTTTCAAACGATAATGGAGTTCTTCAATCTCCAAAATATATAACCTACACAATAAAACAACCTACACAATAAAAAAGAAATAAAAATCAAACCAAAAAAGAAATCAAAACAATAATCAATAATTATACTTCACTTGAACAGTCATTCTCCCATCTATTGGATCTCCTTCATACCAATCATGATGACTGAATTCTTTGACTCCACGTGGAACATTTGTCTATTGAATGATAATCTGATGTTTCTCAATGACATTCTGATTGAATMCAAAACTTGCGCAATTGTTAAACGTATGAAAATTATCCGGAGGTCCCAGTGTCGTCCTCGGCGAAATGTCTGTGTGAATTCGAAAACGTGATTCTGAGTGCCATATGACGGATCGAGTCATTCGGGTTCATCATTCTATTCTTTTGATAGAACATGTATGGAGCATTAAATACCATACATCTCGGTTGGATTCTGATCTCTCCAAGACCACCGGAAAAGCTTGAAGGTCCTTCGACATCGACGTTATCTCCCGCGATGATGTCGGTTTTAATGATTCGGATGCCTGAAAACTGGAAAATATTATTAATTCAATTGTGATATTCTAATATCCATTGCGAAATACATTTGTATTTTTCTGAATCCGAAACTAGAGAATCTAACTTTGTTCAAATATTTTTCTTAAAAATTTCATTGAAAACTCTATTGATAGTTCACCCTGACTGTCAGCTTTGAGCCAAATTTATCTTATGACAAATATTTGAAAAAAGTCAATTGACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGATGACTGAATTCTTTGACT</pcr_primer_p1>
		<pcr_primer_p2>GCTCCATACATGTTCTATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CATGATGACTGAATTCTTTGACTCCACGTGGAACATTTGTCTATTGAATGATAATCTGATGTTTCTCAATGACATTCTGATTGAATACAAAACTTGCGCAATTGTTAAACGTATGAAAATTATCCGGAGGTCCCAGTGTCGTCCTCGGCGAAATGTCTGTGTGAATTCGAAAACGTGATTCTGAGTGCCATATGACGGATCGAGTCATTCGGGTTCATCATTCTATTCTTTTGATAGAACATGTATGGAGC</canonical_amplicon>
		<polymorphic_amplicon>CATGATGACTGAATTCTTTGACTCCACGTGGAACATTTGTCTATTGAATGATAATCTGATGTTTCTCAATGACATTCTGATTGAATMCAAAACTTGCGCAATTGTTAAACGTATGAAAATTATCCGGAGGTCCCAGTGTCGTCCTCGGCGAAATGTCTGTGTGAATTCGAAAACGTGATTCTGAGTGCCATATGACGGATCGAGTCATTCGGGTTCATCATTCTATTCTTTTGATAGAACATGTATGGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25993</snp_id>
        <super_contig>c002000444.Contig4</super_contig>
        <contig_pos>1616</contig_pos>
        <strand></strand>
        <context>TTCGAAAACG[T/A]GATTCTGAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GGAGGTCCCAGTGTCGTCCTCGGCGAAATGTCTGTGTGAATTCGAAAACG</left_flank>
        <right_flank>GATTCTGAGTGCCATATGACGGATCGAGTCATTCGGGTTCATCATTCTAT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTCTTGATAGAGATATTAACGTTTTTCTGAATTCGTAGGTTTTCTGTTTTGGTATCCACGAGAAAGATCTCAAATATTTAGCCGGGGTAGTTCTTGTTACATTTTTGCCGGAAATTGATTCTTAGCGAGTTATAGAGCTTTGAAGATTTTCAAACGATAATGGAGTTCTTCAATCTCCAAAATATATAACCTACACAATAAAACAACCTACACAATAAAAAAGAAATAAAAATCAAACCAAAAAAGAAATCAAAACAATAATCAATAATTATACTTCACTTGAACAGTCATTCTCCCATCTATTGGATCTCCTTCATACCAATCATGATGACTGAATTCTTTGACTCCACGTGGAACATTTGTCTATTGAATGATAATCTGATGTTTCTCAATGACATTCTGATTGAATACAAAACTTGCGCAATTGTTAAACGTATGAAAATTATCCGGAGGTCCCAGTGTCGTCCTCGGCGAAATGTCTGTGTGAATTCGAAAACGTGATTCTGAGTGCCATATGACGGATCGAGTCATTCGGGTTCATCATTCTATTCTTTTGATAGAACATGTATGGAGCATTAAATACCATACATCTCGGTTGGATTCTGATCTCTCCAAGACCACCGGAAAAGCTTGAAGGTCCTTCGACATCGACGTTATCTCCCGCGATGATGTCGGTTTTAATGATTCGGATGCCTGAAAACTGGAAAATATTATTAATTCAATTGTGATATTCTAATATCCATTGCGAAATACATTTGTATTTTTCTGAATCCGAAACTAGAGAATCTAACTTTGTTCAAATATTTTTCTTAAAAATTTCATTGAAAACTCTATTGATAGTTCACCCTGACTGTCAGCTTTGAGCCAAATTTATCTTATGACAAATATTTGAAAAAAGTCAATTGACAAACTAGTTCTCGTAATATCGGAGAGATTTTGTCAGTTGAACTTTTTTTGCTACTTTTTCTAGGAAGTTATAAAAATTGGGCCAGATCTTGA</canonical>
            <polymorphic>CGTCTTGATAGAGATATTAACGTTTTTCTGAATTCGTAGGTTTTCTGTTTTGGTATCCACGAGAAAGATCTCAAATATTTAGCCGGGGTAGTTCTTGTTACATTTTTGCCGGAAATTGATTCTTAGCGAGTTATAGAGCTTTGAAGATTTTCAAACGATAATGGAGTTCTTCAATCTCCAAAATATATAACCTACACAATAAAACAACCTACACAATAAAAAAGAAATAAAAATCAAACCAAAAAAGAAATCAAAACAATAATCAATAATTATACTTCACTTGAACAGTCATTCTCCCATCTATTGGATCTCCTTCATACCAATCATGATGACTGAATTCTTTGACTCCACGTGGAACATTTGTCTATTGAATGATAATCTGATGTTTCTCAATGACATTCTGATTGAATACAAAACTTGCGCAATTGTTAAACGTATGAAAATTATCCGGAGGTCCCAGTGTCGTCCTCGGCGAAATGTCTGTGTGAATTCGAAAACGWGATTCTGAGTGCCATATGACGGATCGAGTCATTCGGGTTCATCATTCTATTCTTTTGATAGAACATGTATGGAGCATTAAATACCATACATCTCGGTTGGATTCTGATCTCTCCAAGACCACCGGAAAAGCTTGAAGGTCCTTCGACATCGACGTTATCTCCCGCGATGATGTCGGTTTTAATGATTCGGATGCCTGAAAACTGGAAAATATTATTAATTCAATTGTGATATTCTAATATCCATTGCGAAATACATTTGTATTTTTCTGAATCCGAAACTAGAGAATCTAACTTTGTTCAAATATTTTTCTTAAAAATTTCATTGAAAACTCTATTGATAGTTCACCCTGACTGTCAGCTTTGAGCCAAATTTATCTTATGACAAATATTTGAAAAAAGTCAATTGACAAACTAGTTCTCGTAATATCGGAGAGATTTTGTCAGTTGAACTTTTTTTGCTACTTTTTCTAGGAAGTTATAAAAATTGGGCCAGATCTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>155 137 117 110 108 107 71 66 59 23 17 14 10 4 2</canonical_bands>
                <polymorphic_bands>155 137 117 110 108 107 71 66 59 24 23 17 4 2</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>348 330 155 83 64 20</canonical_bands>
                <polymorphic_bands>348 330 219 83 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGATGACTGAATTCTTTGACT</pcr_primer_p1>
		<pcr_primer_p2>GCTCCATACATGTTCTATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CATGATGACTGAATTCTTTGACTCCACGTGGAACATTTGTCTATTGAATGATAATCTGATGTTTCTCAATGACATTCTGATTGAATACAAAACTTGCGCAATTGTTAAACGTATGAAAATTATCCGGAGGTCCCAGTGTCGTCCTCGGCGAAATGTCTGTGTGAATTCGAAAACGTGATTCTGAGTGCCATATGACGGATCGAGTCATTCGGGTTCATCATTCTATTCTTTTGATAGAACATGTATGGAGC</canonical_amplicon>
		<polymorphic_amplicon>CATGATGACTGAATTCTTTGACTCCACGTGGAACATTTGTCTATTGAATGATAATCTGATGTTTCTCAATGACATTCTGATTGAATACAAAACTTGCGCAATTGTTAAACGTATGAAAATTATCCGGAGGTCCCAGTGTCGTCCTCGGCGAAATGTCTGTGTGAATTCGAAAACGWGATTCTGAGTGCCATATGACGGATCGAGTCATTCGGGTTCATCATTCTATTCTTTTGATAGAACATGTATGGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25994</snp_id>
        <super_contig>c002000444.Contig4</super_contig>
        <contig_pos>1744</contig_pos>
        <strand></strand>
        <context>ACCACCGGAA[A/G]AGCTTGAAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAATACCATACATCTCGGTTGGATTCTGATCTCTCCAAGACCACCGGAA</left_flank>
        <right_flank>AGCTTGAAGGTCCTTCGACATCGACGTTATCTCCCGCGATGATGTCGGTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTATAGAGCTTTGAAGATTTTCAAACGATAATGGAGTTCTTCAATCTCCAAAATATATAACCTACACAATAAAACAACCTACACAATAAAAAAGAAATAAAAATCAAACCAAAAAAGAAATCAAAACAATAATCAATAATTATACTTCACTTGAACAGTCATTCTCCCATCTATTGGATCTCCTTCATACCAATCATGATGACTGAATTCTTTGACTCCACGTGGAACATTTGTCTATTGAATGATAATCTGATGTTTCTCAATGACATTCTGATTGAATACAAAACTTGCGCAATTGTTAAACGTATGAAAATTATCCGGAGGTCCCAGTGTCGTCCTCGGCGAAATGTCTGTGTGAATTCGAAAACGTGATTCTGAGTGCCATATGACGGATCGAGTCATTCGGGTTCATCATTCTATTCTTTTGATAGAACATGTATGGAGCATTAAATACCATACATCTCGGTTGGATTCTGATCTCTCCAAGACCACCGGAAAAGCTTGAAGGTCCTTCGACATCGACGTTATCTCCCGCGATGATGTCGGTTTTAATGATTCGGATGCCTGAAAACTGGAAAATATTATTAATTCAATTGTGATATTCTAATATCCATTGCGAAATACATTTGTATTTTTCTGAATCCGAAACTAGAGAATCTAACTTTGTTCAAATATTTTTCTTAAAAATTTCATTGAAAACTCTATTGATAGTTCACCCTGACTGTCAGCTTTGAGCCAAATTTATCTTATGACAAATATTTGAAAAAAGTCAATTGACAAACTAGTTCTCGTAATATCGGAGAGATTTTGTCAGTTGAACTTTTTTTGCTACTTTTTCTAGGAAGTTATAAAAATTGGGCCAGATCTTGAGATTCTAGGAGTTTGTGCTTTCAAACGAAAGGGATAGTTAGAAACAACTCCTAGGCTTTCTTACTGATTATAATCCCCAAAAAAACTTACCTTTCGCATTCTGAAGTGCTCCTGAGCTGGCCGATGTT</canonical>
            <polymorphic>AGTTATAGAGCTTTGAAGATTTTCAAACGATAATGGAGTTCTTCAATCTCCAAAATATATAACCTACACAATAAAACAACCTACACAATAAAAAAGAAATAAAAATCAAACCAAAAAAGAAATCAAAACAATAATCAATAATTATACTTCACTTGAACAGTCATTCTCCCATCTATTGGATCTCCTTCATACCAATCATGATGACTGAATTCTTTGACTCCACGTGGAACATTTGTCTATTGAATGATAATCTGATGTTTCTCAATGACATTCTGATTGAATACAAAACTTGCGCAATTGTTAAACGTATGAAAATTATCCGGAGGTCCCAGTGTCGTCCTCGGCGAAATGTCTGTGTGAATTCGAAAACGTGATTCTGAGTGCCATATGACGGATCGAGTCATTCGGGTTCATCATTCTATTCTTTTGATAGAACATGTATGGAGCATTAAATACCATACATCTCGGTTGGATTCTGATCTCTCCAAGACCACCGGAARAGCTTGAAGGTCCTTCGACATCGACGTTATCTCCCGCGATGATGTCGGTTTTAATGATTCGGATGCCTGAAAACTGGAAAATATTATTAATTCAATTGTGATATTCTAATATCCATTGCGAAATACATTTGTATTTTTCTGAATCCGAAACTAGAGAATCTAACTTTGTTCAAATATTTTTCTTAAAAATTTCATTGAAAACTCTATTGATAGTTCACCCTGACTGTCAGCTTTGAGCCAAATTTATCTTATGACAAATATTTGAAAAAAGTCAATTGACAAACTAGTTCTCGTAATATCGGAGAGATTTTGTCAGTTGAACTTTTTTTGCTACTTTTTCTAGGAAGTTATAAAAATTGGGCCAGATCTTGAGATTCTAGGAGTTTGTGCTTTCAAACGAAAGGGATAGTTAGAAACAACTCCTAGGCTTTCTTACTGATTATAATCCCCAAAAAAACTTACCTTTCGCATTCTGAAGTGCTCCTGAGCTGGCCGATGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTCATCATTCTATTCTTTTGA</pcr_primer_p1>
		<pcr_primer_p2>AGATTCTCTAGTTTCGGATTCAG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GGTTCATCATTCTATTCTTTTGATAGAACATGTATGGAGCATTAAATACCATACATCTCGGTTGGATTCTGATCTCTCCAAGACCACCGGAAAAGCTTGAAGGTCCTTCGACATCGACGTTATCTCCCGCGATGATGTCGGTTTTAATGATTCGGATGCCTGAAAACTGGAAAATATTATTAATTCAATTGTGATATTCTAATATCCATTGCGAAATACATTTGTATTTTTCTGAATCCGAAACTAGAGAATCT</canonical_amplicon>
		<polymorphic_amplicon>GGTTCATCATTCTATTCTTTTGATAGAACATGTATGGAGCATTAAATACCATACATCTCGGTTGGATTCTGATCTCTCCAAGACCACCGGAARAGCTTGAAGGTCCTTCGACATCGACGTTATCTCCCGCGATGATGTCGGTTTTAATGATTCGGATGCCTGAAAACTGGAAAATATTATTAATTCAATTGTGATATTCTAATATCCATTGCGAAATACATTTGTATTTTTCTGAATCCGAAACTAGAGAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25995</snp_id>
        <super_contig>c002000444.Contig4</super_contig>
        <contig_pos>17792</contig_pos>
        <strand>+</strand>
        <context>TCAATGATAT[C/T]TAAGAGAGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGCGACACTTTTCCGATGGCCTCACATCGGTCCCCTTTTTCAATGATAT</left_flank>
        <right_flank>TAAGAGAGCATTCAGAGCTTTGACGTGAATGGGATTTTCGATATCCAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAAACAGTTTTTATTCCTAGAGTAATAACGAGAAGTAATGAGATAAATAGGAACAGTGAAGAAACGTTTATCGAAGAGAAAATAGTTTTTTTCGCATGCCTATAAAAAACACCGGCGACTGGCAAAATAATTGGTCGATAGAACTTTAAATTTACATAAAAAGTTCACTTTTATATGGGTTTTATAATAAATAAGAAAAAAGAGCTTTTTTAATGTTTGAAGTCGTTAAAAATTGAAAAAAATAAAGTCGGGAAATAAAAAAAATAAAAATGTTTGCGCGTGGGATTGCGTGCTTTAGGTGCGAACACCGCGACGGCAAAATACACATTCCCTGAAATTTTCCCCGAAATTTTTGCTGTCTGCCCTCCTTTAATACTAGAATCGTTTCTTGCTTGCATAGAAGGCAGCTCTTGCGTTGAAAGACTCCACTGCGCTGGTAGCGAAATAAGGCGACACTTTTCCGATGGCCTCACATCGGTCCCCTTTTTCAATGATATTTAAGAGAGCATTCAGAGCTTTGACGTGAATGGGATTTTCGATATCCAGAAAATCTGGTCTTTTTCTGTTCATTTCATCATATTCTTTGTGCTCGCAGGAATTAACCATTTTGAATTCTAACCAATCACAATTCTAAAAAATTTGTTTCCATAATTTTGGAGGTTATAAAATTGGAAATAACCTGAAAATCTTCATGGATATCCAGCACGTGCAGGAAAAAGGAGAGGAGCGTTTCTTTGGCTAATTCTTCGTTACCGCCAGATGACTGAATGGAATAGTACACGTGACCACCTATTTCTTGCTCGCATAGCCTCATCTGCCGGCGATACCCGCAACCTGTTAGCAAGTGCTTGGAACACCTTCTTCACGGTCGTTTTCTCACACTCCTACAACCCTCTGAAGATCTTCCCAGCCTTTCCCGATAGGTACTTGGTTTCCAGTAGAATAACCTTGTGCTCCTCTGGACACATTCCGAATTTCAAAGTGAAAGCTTTCTCGAA</canonical>
            <polymorphic>ATAAAACAGTTTTTATTCCTAGAGTAATAACGAGAAGTAATGAGATAAATAGGAACAGTGAAGAAACGTTTATCGAAGAGAAAATAGTTTTTTTCGCATGCCTATAAAAAACACCGGCGACTGGCAAAATAATTGGTCGATAGAACTTTAAATTTACATAAAAAGTTCACTTTTATATGGGTTTTATAATAAATAAGAAAAAAGAGCTTTTTTAATGTTTGAAGTCGTTAAAAATTGAAAAAAATAAAGTCGGGAAATAAAAAAAATAAAAATGTTTGCGCGTGGGATTGCGTGCTTTAGGTGCGAACACCGCGACGGCAAAATACACATTCCCTGAAATTTTCCCCGAAATTTTTGCTGTCTGCCCTCCTTTAATACTAGAATCGTTTCTTGCTTGCATAGAAGGCAGCTCTTGCGTTGAAAGACTCCACTGCGCTGGTAGCGAAATAAGGCGACACTTTTCCGATGGCCTCACATCGGTCCCCTTTTTCAATGATATYTAAGAGAGCATTCAGAGCTTTGACGTGAATGGGATTTTCGATATCCAGAAAATCTGGTCTTTTTCTGTTCATTTCATCATATTCTTTGTGCTCGCAGGAATTAACCATTTTGAATTCTAACCAATCACAATTCTAAAAAATTTGTTTCCATAATTTTGGAGGTTATAAAATTGGAAATAACCTGAAAATCTTCATGGATATCCAGCACGTGCAGGAAAAAGGAGAGGAGCGTTTCTTTGGCTAATTCTTCGTTACCGCCAGATGACTGAATGGAATAGTACACGTGACCACCTATTTCTTGCTCGCATAGCCTCATCTGCCGGCGATACCCGCAACCTGTTAGCAAGTGCTTGGAACACCTTCTTCACGGTCGTTTTCTCACACTCCTACAACCCTCTGAAGATCTTCCCAGCCTTTCCCGATAGGTACTTGGTTTCCAGTAGAATAACCTTGTGCTCCTCTGGACACATTCCGAATTTCAAAGTGAAAGCTTTCTCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>399 148 144 128 101 64 16</canonical_bands>
                <polymorphic_bands>399 229 148 144 64 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCGTTTCTTGCTTGCATA</pcr_primer_p1>
		<pcr_primer_p2>GTGATTGGTTAGAATTCAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATCGTTTCTTGCTTGCATAGAAGGCAGCTCTTGCGTTGAAAGACTCCACTGCGCTGGTAGCGAAATAAGGCGACACTTTTCCGATGGCCTCACATCGGTCCCCTTTTTCAATGATATTTAAGAGAGCATTCAGAGCTTTGACGTGAATGGGATTTTCGATATCCAGAAAATCTGGTCTTTTTCTGTTCATTTCATCATATTCTTTGTGCTCGCAGGAATTAACCATTTTGAATTCTAACCAATCAC</canonical_amplicon>
		<polymorphic_amplicon>AATCGTTTCTTGCTTGCATAGAAGGCAGCTCTTGCGTTGAAAGACTCCACTGCGCTGGTAGCGAAATAAGGCGACACTTTTCCGATGGCCTCACATCGGTCCCCTTTTTCAATGATATYTAAGAGAGCATTCAGAGCTTTGACGTGAATGGGATTTTCGATATCCAGAAAATCTGGTCTTTTTCTGTTCATTTCATCATATTCTTTGTGCTCGCAGGAATTAACCATTTTGAATTCTAACCAATCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25996</snp_id>
        <super_contig>c002000444.Contig4</super_contig>
        <contig_pos>20761</contig_pos>
        <strand>+</strand>
        <context>TACGAAAATC[A/C]TGTTTTTTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAAACCGGTAACCTACCGGACAATACTGTAATCATTTTTTACGAAAATC</left_flank>
        <right_flank>TGTTTTTTACTCAATTATTCTTAATTAATTGTACCCAGTGCCGTTAGATC</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAGTAATGTAACTGAAAGACCTCCAGAAACACTAACTGATAAAAGACACTATTGAAAACAACGAAATGCAGAGAGAGTGAGAGACACAGACAAACGCTATGCACTCACAGAACCTCTATGCACTCAAAGAGACCTTTGTAACCTGAAAAACTAGAAGACACTAAAACACAGATTTCCTATAAAACACTATTTGTTGAATCAACAATAAATCAACCTATTAAAGGTGAGTTGAAACAAATGGAGGCGTCACCAGTGTGAACGCACTCCCAAGCAAGAACTGAAGGGGAAACGATGAGAGAGACCCCGAGGGGAGATGCCCAGAGAAAACAGAGAAGTGTCTGTTGGCGCGCACTTTAAATTCGCGCGGGTACTGTGACCCACTTTCGTTTGCATGTATTTATCGGGGGAGATTTCTCTCCTGTAGACTTGGAAAGAGGGTGAAGAAGATAAAAACCGGTAACCTACCGGACAATACTGTAATCATTTTTTACGAAAATCATGTTTTTTACTCAATTATTCTTAATTAATTGTACCCAGTGCCGTTAGATCCGGACTCGTGAATATTCTCTCCATTTTCGACTTCTCGCGGGTAGGAACTTGACACAGTGTTTCGCTATTTCTTTGCCTTTTGTCGCTCCATTTTTACTGCAAAACTTTTTAGGTTTCTTTTCGAAAAACTCGTTTCTTACAATATGCTTCGTAGTTCGCATTCAATGAGAGCGGGAACCCAATATTCCAAACCTGTGCCACTGATTGTTCCTGTTGGTTCCAGAATCGTGATTACTTGTGTTAGATATTCTAAAATTGTTTTATTAAAAAATATCGTCAAAATCGTAATCGTAAGTGTGAAGAATCCCAACTAACACGAAAGTTTAGTTTTATGGAAATCAGGAAATTTGATATTCTTTGATGGATTCGCCTTTTCAGAATAGAGTCTTCGATCTTCTCTTGGCATCAAGAAATCAATAAACCTAGTAGTATATAAGGCTACAACGGTTT</canonical>
            <polymorphic>CAAGTAATGTAACTGAAAGACCTCCAGAAACACTAACTGATAAAAGACACTATTGAAAACAACGAAATGCAGAGAGAGTGAGAGACACAGACAAACGCTATGCACTCACAGAACCTCTATGCACTCAAAGAGACCTTTGTAACCTGAAAAACTAGAAGACACTAAAACACAGATTTCCTATAAAACACTATTTGTTGAATCAACAATAAATCAACCTATTAAAGGTGAGTTGAAACAAATGGAGGCGTCACCAGTGTGAACGCACTCCCAAGCAAGAACTGAAGGGGAAACGATGAGAGAGACCCCGAGGGGAGATGCCCAGAGAAAACAGAGAAGTGTCTGTTGGCGCGCACTTTAAATTCGCGCGGGTACTGTGACCCACTTTCGTTTGCATGTATTTATCGGGGGAGATTTCTCTCCTGTAGACTTGGAAAGAGGGTGAAGAAGATAAAAACCGGTAACCTACCGGACAATACTGTAATCATTTTTTACGAAAATCMTGTTTTTTACTCAATTATTCTTAATTAATTGTACCCAGTGCCGTTAGATCCGGACTCGTGAATATTCTCTCCATTTTCGACTTCTCGCGGGTAGGAACTTGACACAGTGTTTCGCTATTTCTTTGCCTTTTGTCGCTCCATTTTTACTGCAAAACTTTTTAGGTTTCTTTTCGAAAAACTCGTTTCTTACAATATGCTTCGTAGTTCGCATTCAATGAGAGCGGGAACCCAATATTCCAAACCTGTGCCACTGATTGTTCCTGTTGGTTCCAGAATCGTGATTACTTGTGTTAGATATTCTAAAATTGTTTTATTAAAAAATATCGTCAAAATCGTAATCGTAAGTGTGAAGAATCCCAACTAACACGAAAGTTTAGTTTTATGGAAATCAGGAAATTTGATATTCTTTGATGGATTCGCCTTTTCAGAATAGAGTCTTCGATCTTCTCTTGGCATCAAGAAATCAATAAACCTAGTAGTATATAAGGCTACAACGGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 392 107</canonical_bands>
                <polymorphic_bands>608 392</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAAAGACCGAAAAAGTCC</pcr_primer_p1>
		<pcr_primer_p2>GGAGAGAATATTCACGAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>612</pcr_amplicon_size>
		<canonical_amplicon>CATGTTTTTTACTCAATTATTCTTAATTAATTGTACCCAGTGCCGTTAGATCCGGACTCGTGAATATTCTCTCC</canonical_amplicon>
		<polymorphic_amplicon>CMTGTTTTTTACTCAATTATTCTTAATTAATTGTACCCAGTGCCGTTAGATCCGGACTCGTGAATATTCTCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25997</snp_id>
        <super_contig>c002000444.Contig4</super_contig>
        <contig_pos>20877</contig_pos>
        <strand>+</strand>
        <context>AGTGTTTCGC[A/T]ATTTCTTTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTCTCCATTTTCGACTTCTCGCGGGTAGGAACTTGACACAGTGTTTCGC</left_flank>
        <right_flank>ATTTCTTTGCCTTTTGTCGCTCCATTTTTACTGCAAAACTTTTTAGGTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATGCACTCAAAGAGACCTTTGTAACCTGAAAAACTAGAAGACACTAAAACACAGATTTCCTATAAAACACTATTTGTTGAATCAACAATAAATCAACCTATTAAAGGTGAGTTGAAACAAATGGAGGCGTCACCAGTGTGAACGCACTCCCAAGCAAGAACTGAAGGGGAAACGATGAGAGAGACCCCGAGGGGAGATGCCCAGAGAAAACAGAGAAGTGTCTGTTGGCGCGCACTTTAAATTCGCGCGGGTACTGTGACCCACTTTCGTTTGCATGTATTTATCGGGGGAGATTTCTCTCCTGTAGACTTGGAAAGAGGGTGAAGAAGATAAAAACCGGTAACCTACCGGACAATACTGTAATCATTTTTTACGAAAATCATGTTTTTTACTCAATTATTCTTAATTAATTGTACCCAGTGCCGTTAGATCCGGACTCGTGAATATTCTCTCCATTTTCGACTTCTCGCGGGTAGGAACTTGACACAGTGTTTCGCTATTTCTTTGCCTTTTGTCGCTCCATTTTTACTGCAAAACTTTTTAGGTTTCTTTTCGAAAAACTCGTTTCTTACAATATGCTTCGTAGTTCGCATTCAATGAGAGCGGGAACCCAATATTCCAAACCTGTGCCACTGATTGTTCCTGTTGGTTCCAGAATCGTGATTACTTGTGTTAGATATTCTAAAATTGTTTTATTAAAAAATATCGTCAAAATCGTAATCGTAAGTGTGAAGAATCCCAACTAACACGAAAGTTTAGTTTTATGGAAATCAGGAAATTTGATATTCTTTGATGGATTCGCCTTTTCAGAATAGAGTCTTCGATCTTCTCTTGGCATCAAGAAATCAATAAACCTAGTAGTATATAAGGCTACAACGGTTTTCAAGCTTCCATGTTTCGCTCCGAAACTTCCCATATAAAATCAAACATACATGTGTCGGCGCTCTTCTTCATTCTCTGAAATTTTCGATGCGTTAAAAATGTAATATGAGGAATTT</canonical>
            <polymorphic>CTATGCACTCAAAGAGACCTTTGTAACCTGAAAAACTAGAAGACACTAAAACACAGATTTCCTATAAAACACTATTTGTTGAATCAACAATAAATCAACCTATTAAAGGTGAGTTGAAACAAATGGAGGCGTCACCAGTGTGAACGCACTCCCAAGCAAGAACTGAAGGGGAAACGATGAGAGAGACCCCGAGGGGAGATGCCCAGAGAAAACAGAGAAGTGTCTGTTGGCGCGCACTTTAAATTCGCGCGGGTACTGTGACCCACTTTCGTTTGCATGTATTTATCGGGGGAGATTTCTCTCCTGTAGACTTGGAAAGAGGGTGAAGAAGATAAAAACCGGTAACCTACCGGACAATACTGTAATCATTTTTTACGAAAATCATGTTTTTTACTCAATTATTCTTAATTAATTGTACCCAGTGCCGTTAGATCCGGACTCGTGAATATTCTCTCCATTTTCGACTTCTCGCGGGTAGGAACTTGACACAGTGTTTCGCWATTTCTTTGCCTTTTGTCGCTCCATTTTTACTGCAAAACTTTTTAGGTTTCTTTTCGAAAAACTCGTTTCTTACAATATGCTTCGTAGTTCGCATTCAATGAGAGCGGGAACCCAATATTCCAAACCTGTGCCACTGATTGTTCCTGTTGGTTCCAGAATCGTGATTACTTGTGTTAGATATTCTAAAATTGTTTTATTAAAAAATATCGTCAAAATCGTAATCGTAAGTGTGAAGAATCCCAACTAACACGAAAGTTTAGTTTTATGGAAATCAGGAAATTTGATATTCTTTGATGGATTCGCCTTTTCAGAATAGAGTCTTCGATCTTCTCTTGGCATCAAGAAATCAATAAACCTAGTAGTATATAAGGCTACAACGGTTTTCAAGCTTCCATGTTTCGCTCCGAAACTTCCCATATAAAATCAAACATACATGTGTCGGCGCTCTTCTTCATTCTCTGAAATTTTCGATGCGTTAAAAATGTAATATGAGGAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTAATTAATTGTACCCAGTGC</pcr_primer_p1>
		<pcr_primer_p2>ACCAACAGGAACAATCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTAATTAATTGTACCCAGTGCCGTTAGATCCGGACTCGTGAATATTCTCTCCATTTTCGACTTCTCGCGGGTAGGAACTTGACACAGTGTTTCGCTATTTCTTTGCCTTTTGTCGCTCCATTTTTACTGCAAAACTTTTTAGGTTTCTTTTCGAAAAACTCGTTTCTTACAATATGCTTCGTAGTTCGCATTCAATGAGAGCGGGAACCCAATATTCCAAACCTGTGCCACTGATTGTTCCTGTTGGT</canonical_amplicon>
		<polymorphic_amplicon>TCTTAATTAATTGTACCCAGTGCCGTTAGATCCGGACTCGTGAATATTCTCTCCATTTTCGACTTCTCGCGGGTAGGAACTTGACACAGTGTTTCGCWATTTCTTTGCCTTTTGTCGCTCCATTTTTACTGCAAAACTTTTTAGGTTTCTTTTCGAAAAACTCGTTTCTTACAATATGCTTCGTAGTTCGCATTCAATGAGAGCGGGAACCCAATATTCCAAACCTGTGCCACTGATTGTTCCTGTTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25998</snp_id>
        <super_contig>c002000444.Contig4</super_contig>
        <contig_pos>21199</contig_pos>
        <strand>+</strand>
        <context>GAATAGAGTC[C/T]TCGATCTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCAGGAAATTTGATATTCTTTGATGGATTCGCCTTTTCAGAATAGAGTC</left_flank>
        <right_flank>TCGATCTTCTCTTGGCATCAAGAAATCAATAAACCTAGTAGTATATAAGG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGAAGAAGATAAAAACCGGTAACCTACCGGACAATACTGTAATCATTTTTTACGAAAATCATGTTTTTTACTCAATTATTCTTAATTAATTGTACCCAGTGCCGTTAGATCCGGACTCGTGAATATTCTCTCCATTTTCGACTTCTCGCGGGTAGGAACTTGACACAGTGTTTCGCTATTTCTTTGCCTTTTGTCGCTCCATTTTTACTGCAAAACTTTTTAGGTTTCTTTTCGAAAAACTCGTTTCTTACAATATGCTTCGTAGTTCGCATTCAATGAGAGCGGGAACCCAATATTCCAAACCTGTGCCACTGATTGTTCCTGTTGGTTCCAGAATCGTGATTACTTGTGTTAGATATTCTAAAATTGTTTTATTAAAAAATATCGTCAAAATCGTAATCGTAAGTGTGAAGAATCCCAACTAACACGAAAGTTTAGTTTTATGGAAATCAGGAAATTTGATATTCTTTGATGGATTCGCCTTTTCAGAATAGAGTCTTCGATCTTCTCTTGGCATCAAGAAATCAATAAACCTAGTAGTATATAAGGCTACAACGGTTTTCAAGCTTCCATGTTTCGCTCCGAAACTTCCCATATAAAATCAAACATACATGTGTCGGCGCTCTTCTTCATTCTCTGAAATTTTCGATGCGTTAAAAATGTAATATGAGGAATTTTCTATACCTAATTGATATAAATCTGGAACAACCACGTCTTCAGAAGTGAAGAGTTTTGGGTTCACAGATACCATTGGATTCGGGACGTCGTTTAACTGCACACTGTTGTCACGTCTTCCGAGAACATTTGCCATTTGAATTTTCGTAGTTTCCATGAATTTCAAAACTTTCTTACATAGATTGCGTGTTACTATTTAAATAGCTCAGCTGTGACAGTTCCTGATCACTCAATTTACTATATAAATAGTTTCGAGATTGCTTATCGTTATTATCACCGAGGGAATTCGCTTCTGATAATCCGTTTGCTGCTTCAAACTCTTCA</canonical>
            <polymorphic>GTGAAGAAGATAAAAACCGGTAACCTACCGGACAATACTGTAATCATTTTTTACGAAAATCATGTTTTTTACTCAATTATTCTTAATTAATTGTACCCAGTGCCGTTAGATCCGGACTCGTGAATATTCTCTCCATTTTCGACTTCTCGCGGGTAGGAACTTGACACAGTGTTTCGCTATTTCTTTGCCTTTTGTCGCTCCATTTTTACTGCAAAACTTTTTAGGTTTCTTTTCGAAAAACTCGTTTCTTACAATATGCTTCGTAGTTCGCATTCAATGAGAGCGGGAACCCAATATTCCAAACCTGTGCCACTGATTGTTCCTGTTGGTTCCAGAATCGTGATTACTTGTGTTAGATATTCTAAAATTGTTTTATTAAAAAATATCGTCAAAATCGTAATCGTAAGTGTGAAGAATCCCAACTAACACGAAAGTTTAGTTTTATGGAAATCAGGAAATTTGATATTCTTTGATGGATTCGCCTTTTCAGAATAGAGTCYTCGATCTTCTCTTGGCATCAAGAAATCAATAAACCTAGTAGTATATAAGGCTACAACGGTTTTCAAGCTTCCATGTTTCGCTCCGAAACTTCCCATATAAAATCAAACATACATGTGTCGGCGCTCTTCTTCATTCTCTGAAATTTTCGATGCGTTAAAAATGTAATATGAGGAATTTTCTATACCTAATTGATATAAATCTGGAACAACCACGTCTTCAGAAGTGAAGAGTTTTGGGTTCACAGATACCATTGGATTCGGGACGTCGTTTAACTGCACACTGTTGTCACGTCTTCCGAGAACATTTGCCATTTGAATTTTCGTAGTTTCCATGAATTTCAAAACTTTCTTACATAGATTGCGTGTTACTATTTAAATAGCTCAGCTGTGACAGTTCCTGATCACTCAATTTACTATATAAATAGTTTCGAGATTGCTTATCGTTATTATCACCGAGGGAATTCGCTTCTGATAATCCGTTTGCTGCTTCAAACTCTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTAATCGTAAGTGTGAAGAATC</pcr_primer_p1>
		<pcr_primer_p2>AATTTCAGAGAATGAAGAAGAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTAATCGTAAGTGTGAAGAATCCCAACTAACACGAAAGTTTAGTTTTATGGAAATCAGGAAATTTGATATTCTTTGATGGATTCGCCTTTTCAGAATAGAGTCTTCGATCTTCTCTTGGCATCAAGAAATCAATAAACCTAGTAGTATATAAGGCTACAACGGTTTTCAAGCTTCCATGTTTCGCTCCGAAACTTCCCATATAAAATCAAACATACATGTGTCGGCGCTCTTCTTCATTCTCTGAAATT</canonical_amplicon>
		<polymorphic_amplicon>CGTAATCGTAAGTGTGAAGAATCCCAACTAACACGAAAGTTTAGTTTTATGGAAATCAGGAAATTTGATATTCTTTGATGGATTCGCCTTTTCAGAATAGAGTCYTCGATCTTCTCTTGGCATCAAGAAATCAATAAACCTAGTAGTATATAAGGCTACAACGGTTTTCAAGCTTCCATGTTTCGCTCCGAAACTTCCCATATAAAATCAAACATACATGTGTCGGCGCTCTTCTTCATTCTCTGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb25999</snp_id>
        <super_contig>c002000444.Contig4</super_contig>
        <contig_pos>55863</contig_pos>
        <strand>+</strand>
        <context>ACACACCTTT[A/C]AATTTCAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTCCGATATGAATTTAAAACATGAAACGAGGAGCACGAGGACACACCTTT</left_flank>
        <right_flank>AATTTCAAGAAAACAATTTTCAAATACTGCAAGAATGATGTGCAAATCTT</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATTCCCTGAGTCATTGGCATTCGATGTTCTATCTGATGATGTGGATTGTCTAGGTCTAGCTAGACTGGTTAGGCCAGTCTGAGCTGTTATAGAGCTATTCATGCCTAATTGAGAGTGGTTTGATTTCTCTCTATACGATCTGGAACCCCGATTGGGATCCTCAATTGTATTTTCTTGATTTTTCTGAATATTCTATAAGACAGCTGTTCTTCATATTCTGCTGCTATCTAAAATTTAGTTAATGACGCATAATGGTGAATGGTAATTTGAAAACGATTTTCATCAGTAATCCTATCAGTAATATGACCGTGTATTCACACCAACCAAAGGCTTTCAACCTGGAGACGGAATCAGAAGGACATTTTCCTATTTGTTCAACCACCCTGATAATTATGGAAGAAGGGCCCCTAGTCTACCTTTTATCGAATATTATAAACCACAATTCCTGTCCGATATGAATTTAAAACATGAAACGAGGAGCACGAGGACACACCTTTCAATTTCAAGAAAACAATTTTCAAATACTGCAAGAATGATGTGCAAATCTTGGTGGAAGCAGTTGTCCAATTAAAAATCCTCAAAAATGTGAGTAAAAATTCATGAAGTCTCGCAAAATTTTAGTTTTTCAGTGTCATGATGCATACCGCCTGAGGCCAAGAGACGCAATGTATGGAGGAAGAACTCAACAATTTTAAAAGTTTTGTCAAGGCCTGCTCAGAAGGAGTTTCATGCTTATCAAAAACTGCTGCCATCACCGCGGACATATATCATATACATCCAACCTGGTTCGATAGAAGTGGAACACGATGACGAGAAGATCGATTGCAGATTAATGTCACTGAGATTGAAGAAGAAGGAGTTTCAACTTATGAAGAACGACAGTTGATATTCATTGCCGGAGACATTTATGCCGGAGTCAAGGACTCTTCGTTTCCAATGATGTTAGCTGTCTCCTTTGTAGCCAGTATACGTTCTCGGAGAACCATGATTGTCGACGG</canonical>
            <polymorphic>AGATTCCCTGAGTCATTGGCATTCGATGTTCTATCTGATGATGTGGATTGTCTAGGTCTAGCTAGACTGGTTAGGCCAGTCTGAGCTGTTATAGAGCTATTCATGCCTAATTGAGAGTGGTTTGATTTCTCTCTATACGATCTGGAACCCCGATTGGGATCCTCAATTGTATTTTCTTGATTTTTCTGAATATTCTATAAGACAGCTGTTCTTCATATTCTGCTGCTATCTAAAATTTAGTTAATGACGCATAATGGTGAATGGTAATTTGAAAACGATTTTCATCAGTAATCCTATCAGTAATATGACCGTGTATTCACACCAACCAAAGGCTTTCAACCTGGAGACGGAATCAGAAGGACATTTTCCTATTTGTTCAACCACCCTGATAATTATGGAAGAAGGGCCCCTAGTCTACCTTTTATCGAATATTATAAACCACAATTCCTGTCCGATATGAATTTAAAACATGAAACGAGGAGCACGAGGACACACCTTTMAATTTCAAGAAAACAATTTTCAAATACTGCAAGAATGATGTGCAAATCTTGGTGGAAGCAGTTGTCCAATTAAAAATCCTCAAAAATGTGAGTAAAAATTCATGAAGTCTCGCAAAATTTTAGTTTTTCAGTGTCATGATGCATACCGCCTGAGGCCAAGAGACGCAATGTATGGAGGAAGAACTCAACAATTTTAAAAGTTTTGTCAAGGCCTGCTCAGAAGGAGTTTCATGCTTATCAAAAACTGCTGCCATCACCGCGGACATATATCATATACATCCAACCTGGTTCGATAGAAGTGGAACACGATGACGAGAAGATCGATTGCAGATTAATGTCACTGAGATTGAAGAAGAAGGAGTTTCAACTTATGAAGAACGACAGTTGATATTCATTGCCGGAGACATTTATGCCGGAGTCAAGGACTCTTCGTTTCCAATGATGTTAGCTGTCTCCTTTGTAGCCAGTATACGTTCTCGGAGAACCATGATTGTCGACGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGGACATTTTCCTATTTGTT</pcr_primer_p1>
		<pcr_primer_p2>CATGAATTTTTACTCACATTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAGGACATTTTCCTATTTGTTCAACCACCCTGATAATTATGGAAGAAGGGCCCCTAGTCTACCTTTTATCGAATATTATAAACCACAATTCCTGTCCGATATGAATTTAAAACATGAAACGAGGAGCACGAGGACACACCTTTCAATTTCAAGAAAACAATTTTCAAATACTGCAAGAATGATGTGCAAATCTTGGTGGAAGCAGTTGTCCAATTAAAAATCCTCAAAAATGTGAGTAAAAATTCATG</canonical_amplicon>
		<polymorphic_amplicon>AGAAGGACATTTTCCTATTTGTTCAACCACCCTGATAATTATGGAAGAAGGGCCCCTAGTCTACCTTTTATCGAATATTATAAACCACAATTCCTGTCCGATATGAATTTAAAACATGAAACGAGGAGCACGAGGACACACCTTTMAATTTCAAGAAAACAATTTTCAAATACTGCAAGAATGATGTGCAAATCTTGGTGGAAGCAGTTGTCCAATTAAAAATCCTCAAAAATGTGAGTAAAAATTCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26000</snp_id>
        <super_contig>c002000444.Contig4</super_contig>
        <contig_pos>55970</contig_pos>
        <strand>+</strand>
        <context>AATTCATGAA[A/G]TCTCGCAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCAGTTGTCCAATTAAAAATCCTCAAAAATGTGAGTAAAAATTCATGAA</left_flank>
        <right_flank>TCTCGCAAAATTTTAGTTTTTCAGTGTCATGATGCATACCGCCTGAGGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTGAGAGTGGTTTGATTTCTCTCTATACGATCTGGAACCCCGATTGGGATCCTCAATTGTATTTTCTTGATTTTTCTGAATATTCTATAAGACAGCTGTTCTTCATATTCTGCTGCTATCTAAAATTTAGTTAATGACGCATAATGGTGAATGGTAATTTGAAAACGATTTTCATCAGTAATCCTATCAGTAATATGACCGTGTATTCACACCAACCAAAGGCTTTCAACCTGGAGACGGAATCAGAAGGACATTTTCCTATTTGTTCAACCACCCTGATAATTATGGAAGAAGGGCCCCTAGTCTACCTTTTATCGAATATTATAAACCACAATTCCTGTCCGATATGAATTTAAAACATGAAACGAGGAGCACGAGGACACACCTTTCAATTTCAAGAAAACAATTTTCAAATACTGCAAGAATGATGTGCAAATCTTGGTGGAAGCAGTTGTCCAATTAAAAATCCTCAAAAATGTGAGTAAAAATTCATGAAGTCTCGCAAAATTTTAGTTTTTCAGTGTCATGATGCATACCGCCTGAGGCCAAGAGACGCAATGTATGGAGGAAGAACTCAACAATTTTAAAAGTTTTGTCAAGGCCTGCTCAGAAGGAGTTTCATGCTTATCAAAAACTGCTGCCATCACCGCGGACATATATCATATACATCCAACCTGGTTCGATAGAAGTGGAACACGATGACGAGAAGATCGATTGCAGATTAATGTCACTGAGATTGAAGAAGAAGGAGTTTCAACTTATGAAGAACGACAGTTGATATTCATTGCCGGAGACATTTATGCCGGAGTCAAGGACTCTTCGTTTCCAATGATGTTAGCTGTCTCCTTTGTAGCCAGTATACGTTCTCGGAGAACCATGATTGTCGACGGTGTAACAAGTTGGTTTACGAGTTGGTATTTCATCGCTATGGCTAGTATCGTCATCGTTGTGCTGATCATCGTTGGAGTAATTTTCGTCAAGTTTTACTTTGAAAGGA</canonical>
            <polymorphic>TAATTGAGAGTGGTTTGATTTCTCTCTATACGATCTGGAACCCCGATTGGGATCCTCAATTGTATTTTCTTGATTTTTCTGAATATTCTATAAGACAGCTGTTCTTCATATTCTGCTGCTATCTAAAATTTAGTTAATGACGCATAATGGTGAATGGTAATTTGAAAACGATTTTCATCAGTAATCCTATCAGTAATATGACCGTGTATTCACACCAACCAAAGGCTTTCAACCTGGAGACGGAATCAGAAGGACATTTTCCTATTTGTTCAACCACCCTGATAATTATGGAAGAAGGGCCCCTAGTCTACCTTTTATCGAATATTATAAACCACAATTCCTGTCCGATATGAATTTAAAACATGAAACGAGGAGCACGAGGACACACCTTTCAATTTCAAGAAAACAATTTTCAAATACTGCAAGAATGATGTGCAAATCTTGGTGGAAGCAGTTGTCCAATTAAAAATCCTCAAAAATGTGAGTAAAAATTCATGAARTCTCGCAAAATTTTAGTTTTTCAGTGTCATGATGCATACCGCCTGAGGCCAAGAGACGCAATGTATGGAGGAAGAACTCAACAATTTTAAAAGTTTTGTCAAGGCCTGCTCAGAAGGAGTTTCATGCTTATCAAAAACTGCTGCCATCACCGCGGACATATATCATATACATCCAACCTGGTTCGATAGAAGTGGAACACGATGACGAGAAGATCGATTGCAGATTAATGTCACTGAGATTGAAGAAGAAGGAGTTTCAACTTATGAAGAACGACAGTTGATATTCATTGCCGGAGACATTTATGCCGGAGTCAAGGACTCTTCGTTTCCAATGATGTTAGCTGTCTCCTTTGTAGCCAGTATACGTTCTCGGAGAACCATGATTGTCGACGGTGTAACAAGTTGGTTTACGAGTTGGTATTTCATCGCTATGGCTAGTATCGTCATCGTTGTGCTGATCATCGTTGGAGTAATTTTCGTCAAGTTTTACTTTGAAAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGATATGAATTTAAAACATGAA</pcr_primer_p1>
		<pcr_primer_p2>TTAAAATTGTTGAGTTCTTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CCGATATGAATTTAAAACATGAAACGAGGAGCACGAGGACACACCTTTCAATTTCAAGAAAACAATTTTCAAATACTGCAAGAATGATGTGCAAATCTTGGTGGAAGCAGTTGTCCAATTAAAAATCCTCAAAAATGTGAGTAAAAATTCATGAAGTCTCGCAAAATTTTAGTTTTTCAGTGTCATGATGCATACCGCCTGAGGCCAAGAGACGCAATGTATGGAGGAAGAACTCAACAATTTTAA</canonical_amplicon>
		<polymorphic_amplicon>CCGATATGAATTTAAAACATGAAACGAGGAGCACGAGGACACACCTTTCAATTTCAAGAAAACAATTTTCAAATACTGCAAGAATGATGTGCAAATCTTGGTGGAAGCAGTTGTCCAATTAAAAATCCTCAAAAATGTGAGTAAAAATTCATGAARTCTCGCAAAATTTTAGTTTTTCAGTGTCATGATGCATACCGCCTGAGGCCAAGAGACGCAATGTATGGAGGAAGAACTCAACAATTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26001</snp_id>
        <super_contig>c002000444.Contig4</super_contig>
        <contig_pos>56260</contig_pos>
        <strand>+</strand>
        <context>GATATTCATT[G/T]CCGGAGACAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGAAGAAGAAGGAGTTTCAACTTATGAAGAACGACAGTTGATATTCATT</left_flank>
        <right_flank>CCGGAGACATTTATGCCGGAGTCAAGGACTCTTCGTTTCCAATGATGTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGAAGGGCCCCTAGTCTACCTTTTATCGAATATTATAAACCACAATTCCTGTCCGATATGAATTTAAAACATGAAACGAGGAGCACGAGGACACACCTTTCAATTTCAAGAAAACAATTTTCAAATACTGCAAGAATGATGTGCAAATCTTGGTGGAAGCAGTTGTCCAATTAAAAATCCTCAAAAATGTGAGTAAAAATTCATGAAGTCTCGCAAAATTTTAGTTTTTCAGTGTCATGATGCATACCGCCTGAGGCCAAGAGACGCAATGTATGGAGGAAGAACTCAACAATTTTAAAAGTTTTGTCAAGGCCTGCTCAGAAGGAGTTTCATGCTTATCAAAAACTGCTGCCATCACCGCGGACATATATCATATACATCCAACCTGGTTCGATAGAAGTGGAACACGATGACGAGAAGATCGATTGCAGATTAATGTCACTGAGATTGAAGAAGAAGGAGTTTCAACTTATGAAGAACGACAGTTGATATTCATTGCCGGAGACATTTATGCCGGAGTCAAGGACTCTTCGTTTCCAATGATGTTAGCTGTCTCCTTTGTAGCCAGTATACGTTCTCGGAGAACCATGATTGTCGACGGTGTAACAAGTTGGTTTACGAGTTGGTATTTCATCGCTATGGCTAGTATCGTCATCGTTGTGCTGATCATCGTTGGAGTAATTTTCGTCAAGTTTTACTTTGAAAGGAAAGTAGTTACCATTCTTCTCGGTATTAATTCGGCCATTACGACATACATTTGTTTTAATGATTGTCCTAATAGAACATTTCTTCCCAAAAATTACCAATTTTGAATTGTATGACCCTCACCCCAACCCAACACCGTGTGAGCCTTAAGCGACGTCGGCAAATAAAGTAAACTTGGCAATTTTGGTAATTGATAATTTGTATTTTTGAATTATTTGATATTTGAATTAAAGTATGTTTTCTGAATTTTTCTAAACTTCTTAATAAAATTTTTCTCAAAAATAACAATTCTT</canonical>
            <polymorphic>GAAGAAGGGCCCCTAGTCTACCTTTTATCGAATATTATAAACCACAATTCCTGTCCGATATGAATTTAAAACATGAAACGAGGAGCACGAGGACACACCTTTCAATTTCAAGAAAACAATTTTCAAATACTGCAAGAATGATGTGCAAATCTTGGTGGAAGCAGTTGTCCAATTAAAAATCCTCAAAAATGTGAGTAAAAATTCATGAAGTCTCGCAAAATTTTAGTTTTTCAGTGTCATGATGCATACCGCCTGAGGCCAAGAGACGCAATGTATGGAGGAAGAACTCAACAATTTTAAAAGTTTTGTCAAGGCCTGCTCAGAAGGAGTTTCATGCTTATCAAAAACTGCTGCCATCACCGCGGACATATATCATATACATCCAACCTGGTTCGATAGAAGTGGAACACGATGACGAGAAGATCGATTGCAGATTAATGTCACTGAGATTGAAGAAGAAGGAGTTTCAACTTATGAAGAACGACAGTTGATATTCATTKCCGGAGACATTTATGCCGGAGTCAAGGACTCTTCGTTTCCAATGATGTTAGCTGTCTCCTTTGTAGCCAGTATACGTTCTCGGAGAACCATGATTGTCGACGGTGTAACAAGTTGGTTTACGAGTTGGTATTTCATCGCTATGGCTAGTATCGTCATCGTTGTGCTGATCATCGTTGGAGTAATTTTCGTCAAGTTTTACTTTGAAAGGAAAGTAGTTACCATTCTTCTCGGTATTAATTCGGCCATTACGACATACATTTGTTTTAATGATTGTCCTAATAGAACATTTCTTCCCAAAAATTACCAATTTTGAATTGTATGACCCTCACCCCAACCCAACACCGTGTGAGCCTTAAGCGACGTCGGCAAATAAAGTAAACTTGGCAATTTTGGTAATTGATAATTTGTATTTTTGAATTATTTGATATTTGAATTAAAGTATGTTTTCTGAATTTTTCTAAACTTCTTAATAAAATTTTTCTCAAAAATAACAATTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGAAGAAGAAGGAGTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>TAAAACTTGACGAAAATTACTCC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTGAAGAAGAAGGAGTTTCAACTTATGAAGAACGACAGTTGATATTCATTGCCGGAGACATTTATGCCGGAGTCAAGGACTCTTCGTTTCCAATGATGTTAGCTGTCTCCTTTGTAGCCAGTATACGTTCTCGGAGAACCATGATTGTCGACGGTGTAACAAGTTGGTTTACGAGTTGGTATTTCATCGCTATGGCTAGTATCGTCATCGTTGTGCTGATCATCGTTGGAGTAATTTTCGTCAAGTTTTA</canonical_amplicon>
		<polymorphic_amplicon>ATTGAAGAAGAAGGAGTTTCAACTTATGAAGAACGACAGTTGATATTCATTKCCGGAGACATTTATGCCGGAGTCAAGGACTCTTCGTTTCCAATGATGTTAGCTGTCTCCTTTGTAGCCAGTATACGTTCTCGGAGAACCATGATTGTCGACGGTGTAACAAGTTGGTTTACGAGTTGGTATTTCATCGCTATGGCTAGTATCGTCATCGTTGTGCTGATCATCGTTGGAGTAATTTTCGTCAAGTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26002</snp_id>
        <super_contig>c002000444.Contig4</super_contig>
        <contig_pos>56295</contig_pos>
        <strand>+</strand>
        <context>AGGACTCTTC[A/G]TTTCCAATGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGTTGATATTCATTGCCGGAGACATTTATGCCGGAGTCAAGGACTCTTC</left_flank>
        <right_flank>TTTCCAATGATGTTAGCTGTCTCCTTTGTAGCCAGTATACGTTCTCGGAG</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAAACCACAATTCCTGTCCGATATGAATTTAAAACATGAAACGAGGAGCACGAGGACACACCTTTCAATTTCAAGAAAACAATTTTCAAATACTGCAAGAATGATGTGCAAATCTTGGTGGAAGCAGTTGTCCAATTAAAAATCCTCAAAAATGTGAGTAAAAATTCATGAAGTCTCGCAAAATTTTAGTTTTTCAGTGTCATGATGCATACCGCCTGAGGCCAAGAGACGCAATGTATGGAGGAAGAACTCAACAATTTTAAAAGTTTTGTCAAGGCCTGCTCAGAAGGAGTTTCATGCTTATCAAAAACTGCTGCCATCACCGCGGACATATATCATATACATCCAACCTGGTTCGATAGAAGTGGAACACGATGACGAGAAGATCGATTGCAGATTAATGTCACTGAGATTGAAGAAGAAGGAGTTTCAACTTATGAAGAACGACAGTTGATATTCATTGCCGGAGACATTTATGCCGGAGTCAAGGACTCTTCGTTTCCAATGATGTTAGCTGTCTCCTTTGTAGCCAGTATACGTTCTCGGAGAACCATGATTGTCGACGGTGTAACAAGTTGGTTTACGAGTTGGTATTTCATCGCTATGGCTAGTATCGTCATCGTTGTGCTGATCATCGTTGGAGTAATTTTCGTCAAGTTTTACTTTGAAAGGAAAGTAGTTACCATTCTTCTCGGTATTAATTCGGCCATTACGACATACATTTGTTTTAATGATTGTCCTAATAGAACATTTCTTCCCAAAAATTACCAATTTTGAATTGTATGACCCTCACCCCAACCCAACACCGTGTGAGCCTTAAGCGACGTCGGCAAATAAAGTAAACTTGGCAATTTTGGTAATTGATAATTTGTATTTTTGAATTATTTGATATTTGAATTAAAGTATGTTTTCTGAATTTTTCTAAACTTCTTAATAAAATTTTTCTCAAAAATAACAATTCTTTCACTAGAAGTTCTGCACAGCGATTTTTCAAACAA</canonical>
            <polymorphic>TATAAACCACAATTCCTGTCCGATATGAATTTAAAACATGAAACGAGGAGCACGAGGACACACCTTTCAATTTCAAGAAAACAATTTTCAAATACTGCAAGAATGATGTGCAAATCTTGGTGGAAGCAGTTGTCCAATTAAAAATCCTCAAAAATGTGAGTAAAAATTCATGAAGTCTCGCAAAATTTTAGTTTTTCAGTGTCATGATGCATACCGCCTGAGGCCAAGAGACGCAATGTATGGAGGAAGAACTCAACAATTTTAAAAGTTTTGTCAAGGCCTGCTCAGAAGGAGTTTCATGCTTATCAAAAACTGCTGCCATCACCGCGGACATATATCATATACATCCAACCTGGTTCGATAGAAGTGGAACACGATGACGAGAAGATCGATTGCAGATTAATGTCACTGAGATTGAAGAAGAAGGAGTTTCAACTTATGAAGAACGACAGTTGATATTCATTGCCGGAGACATTTATGCCGGAGTCAAGGACTCTTCRTTTCCAATGATGTTAGCTGTCTCCTTTGTAGCCAGTATACGTTCTCGGAGAACCATGATTGTCGACGGTGTAACAAGTTGGTTTACGAGTTGGTATTTCATCGCTATGGCTAGTATCGTCATCGTTGTGCTGATCATCGTTGGAGTAATTTTCGTCAAGTTTTACTTTGAAAGGAAAGTAGTTACCATTCTTCTCGGTATTAATTCGGCCATTACGACATACATTTGTTTTAATGATTGTCCTAATAGAACATTTCTTCCCAAAAATTACCAATTTTGAATTGTATGACCCTCACCCCAACCCAACACCGTGTGAGCCTTAAGCGACGTCGGCAAATAAAGTAAACTTGGCAATTTTGGTAATTGATAATTTGTATTTTTGAATTATTTGATATTTGAATTAAAGTATGTTTTCTGAATTTTTCTAAACTTCTTAATAAAATTTTTCTCAAAAATAACAATTCTTTCACTAGAAGTTCTGCACAGCGATTTTTCAAACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGGAGTTTCAACTTATGAAGA</pcr_primer_p1>
		<pcr_primer_p2>TCAAAGTAAAACTTGACGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAGGAGTTTCAACTTATGAAGAACGACAGTTGATATTCATTGCCGGAGACATTTATGCCGGAGTCAAGGACTCTTCGTTTCCAATGATGTTAGCTGTCTCCTTTGTAGCCAGTATACGTTCTCGGAGAACCATGATTGTCGACGGTGTAACAAGTTGGTTTACGAGTTGGTATTTCATCGCTATGGCTAGTATCGTCATCGTTGTGCTGATCATCGTTGGAGTAATTTTCGTCAAGTTTTACTTTGA</canonical_amplicon>
		<polymorphic_amplicon>GAAGGAGTTTCAACTTATGAAGAACGACAGTTGATATTCATTGCCGGAGACATTTATGCCGGAGTCAAGGACTCTTCRTTTCCAATGATGTTAGCTGTCTCCTTTGTAGCCAGTATACGTTCTCGGAGAACCATGATTGTCGACGGTGTAACAAGTTGGTTTACGAGTTGGTATTTCATCGCTATGGCTAGTATCGTCATCGTTGTGCTGATCATCGTTGGAGTAATTTTCGTCAAGTTTTACTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26003</snp_id>
        <super_contig>c002000444.Contig4</super_contig>
        <contig_pos>58288</contig_pos>
        <strand>+</strand>
        <context>TTGAGAAATC[C/T]CAACTAGCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATC</left_flank>
        <right_flank>CAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAGTTGATTTTAGATCTAAAATATTGAATTCCGGCCCAAAATATGATTTTTTAACTTCAAACGATTATTTCAACCTTGCAAATGGTTTAAGTTAGGCAAAATACTAGTTTCGCTTTTTTCAATTTTAGAATATCAAAATCGAAAGCGAAAAATTCTCAAATACATATTTTTCTAGCCTCGGTGTTACAAGACTTGAAAACTTGTTCTTTAGGAAATGCGGTTCTATTATGATGAGGAAACACGGCCATAATCAATCATAATGGTGAAATTGGAATGCAAAAAATTGAAGGATCCCTGACGGTGACACCATTCATTCTCAACACTACGTCCAAAATACTTGATAGAGCTACATCAGACGAATCGCCATCAGGAATGTATAAGCTGAATCCCTTCGACAAGAAGAAAACTTCAAAGAGAATGATAATGAAAGAGAGCTATTATAAACTGGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATCTCAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGTACCTTCTCAACAAAATTTGAATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGACACTTATTCTACACTGTTAAGTGCATACTCTTGCTCTGAAAAAATACTTCCATCAACTTTCCTGTCCAAAATTTGATTGTTTTCCTCTCGTTTGAAGAATCAATAGTGTTTCTTATCTTTTTTCACATTTT</canonical>
            <polymorphic>AAAAAGTTGATTTTAGATCTAAAATATTGAATTCCGGCCCAAAATATGATTTTTTAACTTCAAACGATTATTTCAACCTTGCAAATGGTTTAAGTTAGGCAAAATACTAGTTTCGCTTTTTTCAATTTTAGAATATCAAAATCGAAAGCGAAAAATTCTCAAATACATATTTTTCTAGCCTCGGTGTTACAAGACTTGAAAACTTGTTCTTTAGGAAATGCGGTTCTATTATGATGAGGAAACACGGCCATAATCAATCATAATGGTGAAATTGGAATGCAAAAAATTGAAGGATCCCTGACGGTGACACCATTCATTCTCAACACTACGTCCAAAATACTTGATAGAGCTACATCAGACGAATCGCCATCAGGAATGTATAAGCTGAATCCCTTCGACAAGAAGAAAACTTCAAAGAGAATGATAATGAAAGAGAGCTATTATAAACTGGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATCYCAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGTACCTTCTCAACAAAATTTGAATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGACACTTATTCTACACTGTTAAGTGCATACTCTTGCTCTGAAAAAATACTTCCATCAACTTTCCTGTCCAAAATTTGATTGTTTTCCTCTCGTTTGAAGAATCAATAGTGTTTCTTATCTTTTTTCACATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGAAGAAAACTTCAAAGAGAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAGTGAATGTTTTGAATGCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAGAAGAAAACTTCAAAGAGAATGATAATGAAAGAGAGCTATTATAAACTGGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATCTCAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGTACCTTCTCAACAAAATTTGAATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTCAAAACATTCACTTTT</canonical_amplicon>
		<polymorphic_amplicon>CAAGAAGAAAACTTCAAAGAGAATGATAATGAAAGAGAGCTATTATAAACTGGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATCYCAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGTACCTTCTCAACAAAATTTGAATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTCAAAACATTCACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26004</snp_id>
        <super_contig>c002000444.Contig4</super_contig>
        <contig_pos>58351</contig_pos>
        <strand>+</strand>
        <context>GGACACGAGT[A/G]CCTTCTCAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGT</left_flank>
        <right_flank>CCTTCTCAACAAAATTTGAATGAAAGCAAACCATTTTGAAGTGGGGATAA</right_flank>
        <qual_score>130</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGATTATTTCAACCTTGCAAATGGTTTAAGTTAGGCAAAATACTAGTTTCGCTTTTTTCAATTTTAGAATATCAAAATCGAAAGCGAAAAATTCTCAAATACATATTTTTCTAGCCTCGGTGTTACAAGACTTGAAAACTTGTTCTTTAGGAAATGCGGTTCTATTATGATGAGGAAACACGGCCATAATCAATCATAATGGTGAAATTGGAATGCAAAAAATTGAAGGATCCCTGACGGTGACACCATTCATTCTCAACACTACGTCCAAAATACTTGATAGAGCTACATCAGACGAATCGCCATCAGGAATGTATAAGCTGAATCCCTTCGACAAGAAGAAAACTTCAAAGAGAATGATAATGAAAGAGAGCTATTATAAACTGGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATCTCAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGTACCTTCTCAACAAAATTTGAATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGACACTTATTCTACACTGTTAAGTGCATACTCTTGCTCTGAAAAAATACTTCCATCAACTTTCCTGTCCAAAATTTGATTGTTTTCCTCTCGTTTGAAGAATCAATAGTGTTTCTTATCTTTTTTCACATTTTCTGAAAGATTATAACAGTATTATCGAAGATTTAGAATAAATAAGAGGAATAAATGTTTGCGAT</canonical>
            <polymorphic>ACGATTATTTCAACCTTGCAAATGGTTTAAGTTAGGCAAAATACTAGTTTCGCTTTTTTCAATTTTAGAATATCAAAATCGAAAGCGAAAAATTCTCAAATACATATTTTTCTAGCCTCGGTGTTACAAGACTTGAAAACTTGTTCTTTAGGAAATGCGGTTCTATTATGATGAGGAAACACGGCCATAATCAATCATAATGGTGAAATTGGAATGCAAAAAATTGAAGGATCCCTGACGGTGACACCATTCATTCTCAACACTACGTCCAAAATACTTGATAGAGCTACATCAGACGAATCGCCATCAGGAATGTATAAGCTGAATCCCTTCGACAAGAAGAAAACTTCAAAGAGAATGATAATGAAAGAGAGCTATTATAAACTGGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATCTCAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGTRCCTTCTCAACAAAATTTGAATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGACACTTATTCTACACTGTTAAGTGCATACTCTTGCTCTGAAAAAATACTTCCATCAACTTTCCTGTCCAAAATTTGATTGTTTTCCTCTCGTTTGAAGAATCAATAGTGTTTCTTATCTTTTTTCACATTTTCTGAAAGATTATAACAGTATTATCGAAGATTTAGAATAAATAAGAGGAATAAATGTTTGCGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGAAGAAAACTTCAAAGAGAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAGTGAATGTTTTGAATGCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAGAAGAAAACTTCAAAGAGAATGATAATGAAAGAGAGCTATTATAAACTGGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATCTCAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGTACCTTCTCAACAAAATTTGAATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTCAAAACATTCACTTTT</canonical_amplicon>
		<polymorphic_amplicon>CAAGAAGAAAACTTCAAAGAGAATGATAATGAAAGAGAGCTATTATAAACTGGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATCTCAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGTRCCTTCTCAACAAAATTTGAATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTCAAAACATTCACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26005</snp_id>
        <super_contig>c002000444.Contig4</super_contig>
        <contig_pos>58370</contig_pos>
        <strand>+</strand>
        <context>ACAAAATTTG[A/G]ATGAAAGCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAGTTTGACAGCAGTAAAAGGACACGAGTACCTTCTCAACAAAATTTG</left_flank>
        <right_flank>ATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGGTTTAAGTTAGGCAAAATACTAGTTTCGCTTTTTTCAATTTTAGAATATCAAAATCGAAAGCGAAAAATTCTCAAATACATATTTTTCTAGCCTCGGTGTTACAAGACTTGAAAACTTGTTCTTTAGGAAATGCGGTTCTATTATGATGAGGAAACACGGCCATAATCAATCATAATGGTGAAATTGGAATGCAAAAAATTGAAGGATCCCTGACGGTGACACCATTCATTCTCAACACTACGTCCAAAATACTTGATAGAGCTACATCAGACGAATCGCCATCAGGAATGTATAAGCTGAATCCCTTCGACAAGAAGAAAACTTCAAAGAGAATGATAATGAAAGAGAGCTATTATAAACTGGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATCTCAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGTACCTTCTCAACAAAATTTGAATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGACACTTATTCTACACTGTTAAGTGCATACTCTTGCTCTGAAAAAATACTTCCATCAACTTTCCTGTCCAAAATTTGATTGTTTTCCTCTCGTTTGAAGAATCAATAGTGTTTCTTATCTTTTTTCACATTTTCTGAAAGATTATAACAGTATTATCGAAGATTTAGAATAAATAAGAGGAATAAATGTTTGCGATAACAACACTGAAAACTCAA</canonical>
            <polymorphic>AAATGGTTTAAGTTAGGCAAAATACTAGTTTCGCTTTTTTCAATTTTAGAATATCAAAATCGAAAGCGAAAAATTCTCAAATACATATTTTTCTAGCCTCGGTGTTACAAGACTTGAAAACTTGTTCTTTAGGAAATGCGGTTCTATTATGATGAGGAAACACGGCCATAATCAATCATAATGGTGAAATTGGAATGCAAAAAATTGAAGGATCCCTGACGGTGACACCATTCATTCTCAACACTACGTCCAAAATACTTGATAGAGCTACATCAGACGAATCGCCATCAGGAATGTATAAGCTGAATCCCTTCGACAAGAAGAAAACTTCAAAGAGAATGATAATGAAAGAGAGCTATTATAAACTGGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATCTCAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGTACCTTCTCAACAAAATTTGRATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGACACTTATTCTACACTGTTAAGTGCATACTCTTGCTCTGAAAAAATACTTCCATCAACTTTCCTGTCCAAAATTTGATTGTTTTCCTCTCGTTTGAAGAATCAATAGTGTTTCTTATCTTTTTTCACATTTTCTGAAAGATTATAACAGTATTATCGAAGATTTAGAATAAATAAGAGGAATAAATGTTTGCGATAACAACACTGAAAACTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGAAGAAAACTTCAAAGAGAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAGTGAATGTTTTGAATGCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAGAAGAAAACTTCAAAGAGAATGATAATGAAAGAGAGCTATTATAAACTGGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATCTCAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGTACCTTCTCAACAAAATTTGAATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTCAAAACATTCACTTTT</canonical_amplicon>
		<polymorphic_amplicon>CAAGAAGAAAACTTCAAAGAGAATGATAATGAAAGAGAGCTATTATAAACTGGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATCTCAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGTACCTTCTCAACAAAATTTGRATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTCAAAACATTCACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26006</snp_id>
        <super_contig>c002000444.Contig4</super_contig>
        <contig_pos>58509</contig_pos>
        <strand>+</strand>
        <context>ACGCAGTCGA[A/G]AAGTTATTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGA</left_flank>
        <right_flank>AAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCAT</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTCTATTATGATGAGGAAACACGGCCATAATCAATCATAATGGTGAAATTGGAATGCAAAAAATTGAAGGATCCCTGACGGTGACACCATTCATTCTCAACACTACGTCCAAAATACTTGATAGAGCTACATCAGACGAATCGCCATCAGGAATGTATAAGCTGAATCCCTTCGACAAGAAGAAAACTTCAAAGAGAATGATAATGAAAGAGAGCTATTATAAACTGGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATCTCAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGTACCTTCTCAACAAAATTTGAATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGACACTTATTCTACACTGTTAAGTGCATACTCTTGCTCTGAAAAAATACTTCCATCAACTTTCCTGTCCAAAATTTGATTGTTTTCCTCTCGTTTGAAGAATCAATAGTGTTTCTTATCTTTTTTCACATTTTCTGAAAGATTATAACAGTATTATCGAAGATTTAGAATAAATAAGAGGAATAAATGTTTGCGATAACAACACTGAAAACTCAAAAAGTGACACAATCAAAAGTCTTCAAACAATATTGTTTTTTCAATGCGATTTTTTTCTCTGCTCGAATCTACAAAAATTTTACGATCATTTTTAGAATTCATCGCTGTTTGTGTACCAGACATGAGCGGAATTCCATAT</canonical>
            <polymorphic>GGTTCTATTATGATGAGGAAACACGGCCATAATCAATCATAATGGTGAAATTGGAATGCAAAAAATTGAAGGATCCCTGACGGTGACACCATTCATTCTCAACACTACGTCCAAAATACTTGATAGAGCTACATCAGACGAATCGCCATCAGGAATGTATAAGCTGAATCCCTTCGACAAGAAGAAAACTTCAAAGAGAATGATAATGAAAGAGAGCTATTATAAACTGGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATCTCAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGTACCTTCTCAACAAAATTTGAATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGARAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGACACTTATTCTACACTGTTAAGTGCATACTCTTGCTCTGAAAAAATACTTCCATCAACTTTCCTGTCCAAAATTTGATTGTTTTCCTCTCGTTTGAAGAATCAATAGTGTTTCTTATCTTTTTTCACATTTTCTGAAAGATTATAACAGTATTATCGAAGATTTAGAATAAATAAGAGGAATAAATGTTTGCGATAACAACACTGAAAACTCAAAAAGTGACACAATCAAAAGTCTTCAAACAATATTGTTTTTTCAATGCGATTTTTTTCTCTGCTCGAATCTACAAAAATTTTACGATCATTTTTAGAATTCATCGCTGTTTGTGTACCAGACATGAGCGGAATTCCATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTAGCATTCAAAACATTCAC</pcr_primer_p1>
		<pcr_primer_p2>GTCTGTAAGTATCAAGCTGGTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGAC</canonical_amplicon>
		<polymorphic_amplicon>GTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGARAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26007</snp_id>
        <super_contig>c002000444.Contig4</super_contig>
        <contig_pos>58562</contig_pos>
        <strand>+</strand>
        <context>ATTTGCATCA[C/T]TTATTGTTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCA</left_flank>
        <right_flank>TTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAGAGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATGCAAAAAATTGAAGGATCCCTGACGGTGACACCATTCATTCTCAACACTACGTCCAAAATACTTGATAGAGCTACATCAGACGAATCGCCATCAGGAATGTATAAGCTGAATCCCTTCGACAAGAAGAAAACTTCAAAGAGAATGATAATGAAAGAGAGCTATTATAAACTGGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATCTCAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGTACCTTCTCAACAAAATTTGAATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGACACTTATTCTACACTGTTAAGTGCATACTCTTGCTCTGAAAAAATACTTCCATCAACTTTCCTGTCCAAAATTTGATTGTTTTCCTCTCGTTTGAAGAATCAATAGTGTTTCTTATCTTTTTTCACATTTTCTGAAAGATTATAACAGTATTATCGAAGATTTAGAATAAATAAGAGGAATAAATGTTTGCGATAACAACACTGAAAACTCAAAAAGTGACACAATCAAAAGTCTTCAAACAATATTGTTTTTTCAATGCGATTTTTTTCTCTGCTCGAATCTACAAAAATTTTACGATCATTTTTAGAATTCATCGCTGTTTGTGTACCAGACATGAGCGGAATTCCATATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTAT</canonical>
            <polymorphic>GAATGCAAAAAATTGAAGGATCCCTGACGGTGACACCATTCATTCTCAACACTACGTCCAAAATACTTGATAGAGCTACATCAGACGAATCGCCATCAGGAATGTATAAGCTGAATCCCTTCGACAAGAAGAAAACTTCAAAGAGAATGATAATGAAAGAGAGCTATTATAAACTGGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATCTCAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGTACCTTCTCAACAAAATTTGAATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCAYTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGACACTTATTCTACACTGTTAAGTGCATACTCTTGCTCTGAAAAAATACTTCCATCAACTTTCCTGTCCAAAATTTGATTGTTTTCCTCTCGTTTGAAGAATCAATAGTGTTTCTTATCTTTTTTCACATTTTCTGAAAGATTATAACAGTATTATCGAAGATTTAGAATAAATAAGAGGAATAAATGTTTGCGATAACAACACTGAAAACTCAAAAAGTGACACAATCAAAAGTCTTCAAACAATATTGTTTTTTCAATGCGATTTTTTTCTCTGCTCGAATCTACAAAAATTTTACGATCATTTTTAGAATTCATCGCTGTTTGTGTACCAGACATGAGCGGAATTCCATATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>131 104 97 85 76 68 55 50 49 36 33 32 31 27 24 21 18 17 16 11 10 3 3 3</canonical_bands>
                <polymorphic_bands>131 124 104 85 76 68 55 50 49 36 33 32 31 24 21 18 17 16 11 10 3 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTAGCATTCAAAACATTCAC</pcr_primer_p1>
		<pcr_primer_p2>GTCTGTAAGTATCAAGCTGGTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGAC</canonical_amplicon>
		<polymorphic_amplicon>GTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCAYTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26008</snp_id>
        <super_contig>c002000444.Contig4</super_contig>
        <contig_pos>58579</contig_pos>
        <strand>+</strand>
        <context>TTAATTTTTW[A/T]AAAAAGTCAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTT</left_flank>
        <right_flank>AAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATCCCTGACGGTGACACCATTCATTCTCAACACTACGTCCAAAATACTTGATAGAGCTACATCAGACGAATCGCCATCAGGAATGTATAAGCTGAATCCCTTCGACAAGAAGAAAACTTCAAAGAGAATGATAATGAAAGAGAGCTATTATAAACTGGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATCTCAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGTACCTTCTCAACAAAATTTGAATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGACACTTATTCTACACTGTTAAGTGCATACTCTTGCTCTGAAAAAATACTTCCATCAACTTTCCTGTCCAAAATTTGATTGTTTTCCTCTCGTTTGAAGAATCAATAGTGTTTCTTATCTTTTTTCACATTTTCTGAAAGATTATAACAGTATTATCGAAGATTTAGAATAAATAAGAGGAATAAATGTTTGCGATAACAACACTGAAAACTCAAAAAGTGACACAATCAAAAGTCTTCAAACAATATTGTTTTTTCAATGCGATTTTTTTCTCTGCTCGAATCTACAAAAATTTTACGATCATTTTTAGAATTCATCGCTGTTTGTGTACCAGACATGAGCGGAATTCCATATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCGGATTTT</canonical>
            <polymorphic>GGATCCCTGACGGTGACACCATTCATTCTCAACACTACGTCCAAAATACTTGATAGAGCTACATCAGACGAATCGCCATCAGGAATGTATAAGCTGAATCCCTTCGACAAGAAGAAAACTTCAAAGAGAATGATAATGAAAGAGAGCTATTATAAACTGGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATCTCAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGTACCTTCTCAACAAAATTTGAATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTWAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGACACTTATTCTACACTGTTAAGTGCATACTCTTGCTCTGAAAAAATACTTCCATCAACTTTCCTGTCCAAAATTTGATTGTTTTCCTCTCGTTTGAAGAATCAATAGTGTTTCTTATCTTTTTTCACATTTTCTGAAAGATTATAACAGTATTATCGAAGATTTAGAATAAATAAGAGGAATAAATGTTTGCGATAACAACACTGAAAACTCAAAAAGTGACACAATCAAAAGTCTTCAAACAATATTGTTTTTTCAATGCGATTTTTTTCTCTGCTCGAATCTACAAAAATTTTACGATCATTTTTAGAATTCATCGCTGTTTGTGTACCAGACATGAGCGGAATTCCATATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCGGATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>490 405 76 21 8</canonical_bands>
                <polymorphic_bands>490 405 76 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTAGCATTCAAAACATTCAC</pcr_primer_p1>
		<pcr_primer_p2>GTCTGTAAGTATCAAGCTGGTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGAC</canonical_amplicon>
		<polymorphic_amplicon>GTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTWAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26009</snp_id>
        <super_contig>c002000444.Contig4</super_contig>
        <contig_pos>58601</contig_pos>
        <strand>+</strand>
        <context>AATAAATTTW[A/T]TTGMMAGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTA</left_flank>
        <right_flank>TTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATTCTCAACACTACGTCCAAAATACTTGATAGAGCTACATCAGACGAATCGCCATCAGGAATGTATAAGCTGAATCCCTTCGACAAGAAGAAAACTTCAAAGAGAATGATAATGAAAGAGAGCTATTATAAACTGGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATCTCAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGTACCTTCTCAACAAAATTTGAATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGACACTTATTCTACACTGTTAAGTGCATACTCTTGCTCTGAAAAAATACTTCCATCAACTTTCCTGTCCAAAATTTGATTGTTTTCCTCTCGTTTGAAGAATCAATAGTGTTTCTTATCTTTTTTCACATTTTCTGAAAGATTATAACAGTATTATCGAAGATTTAGAATAAATAAGAGGAATAAATGTTTGCGATAACAACACTGAAAACTCAAAAAGTGACACAATCAAAAGTCTTCAAACAATATTGTTTTTTCAATGCGATTTTTTTCTCTGCTCGAATCTACAAAAATTTTACGATCATTTTTAGAATTCATCGCTGTTTGTGTACCAGACATGAGCGGAATTCCATATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCGGATTTTAAATTTTTCATTCCTTATTCCT</canonical>
            <polymorphic>TCATTCTCAACACTACGTCCAAAATACTTGATAGAGCTACATCAGACGAATCGCCATCAGGAATGTATAAGCTGAATCCCTTCGACAAGAAGAAAACTTCAAAGAGAATGATAATGAAAGAGAGCTATTATAAACTGGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATCTCAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGTACCTTCTCAACAAAATTTGAATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAWTTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGACACTTATTCTACACTGTTAAGTGCATACTCTTGCTCTGAAAAAATACTTCCATCAACTTTCCTGTCCAAAATTTGATTGTTTTCCTCTCGTTTGAAGAATCAATAGTGTTTCTTATCTTTTTTCACATTTTCTGAAAGATTATAACAGTATTATCGAAGATTTAGAATAAATAAGAGGAATAAATGTTTGCGATAACAACACTGAAAACTCAAAAAGTGACACAATCAAAAGTCTTCAAACAATATTGTTTTTTCAATGCGATTTTTTTCTCTGCTCGAATCTACAAAAATTTTACGATCATTTTTAGAATTCATCGCTGTTTGTGTACCAGACATGAGCGGAATTCCATATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCGGATTTTAAATTTTTCATTCCTTATTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>468 404 76 23 21 8</canonical_bands>
                <polymorphic_bands>468 404 97 23 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>262 219 163 127 81 34 24 21 20 20 16 8 5</canonical_bands>
                <polymorphic_bands>262 219 163 132 81 34 24 21 20 20 16 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTAGCATTCAAAACATTCAC</pcr_primer_p1>
		<pcr_primer_p2>GTCTGTAAGTATCAAGCTGGTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGAC</canonical_amplicon>
		<polymorphic_amplicon>GTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAWTTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26010</snp_id>
        <super_contig>c002000444.Contig4</super_contig>
        <contig_pos>58606</contig_pos>
        <strand>+</strand>
        <context>ATTTWWTTGM[A/C]AGAAAAATAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGA</left_flank>
        <right_flank>AGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAACACTACGTCCAAAATACTTGATAGAGCTACATCAGACGAATCGCCATCAGGAATGTATAAGCTGAATCCCTTCGACAAGAAGAAAACTTCAAAGAGAATGATAATGAAAGAGAGCTATTATAAACTGGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATCTCAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGTACCTTCTCAACAAAATTTGAATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGACACTTATTCTACACTGTTAAGTGCATACTCTTGCTCTGAAAAAATACTTCCATCAACTTTCCTGTCCAAAATTTGATTGTTTTCCTCTCGTTTGAAGAATCAATAGTGTTTCTTATCTTTTTTCACATTTTCTGAAAGATTATAACAGTATTATCGAAGATTTAGAATAAATAAGAGGAATAAATGTTTGCGATAACAACACTGAAAACTCAAAAAGTGACACAATCAAAAGTCTTCAAACAATATTGTTTTTTCAATGCGATTTTTTTCTCTGCTCGAATCTACAAAAATTTTACGATCATTTTTAGAATTCATCGCTGTTTGTGTACCAGACATGAGCGGAATTCCATATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCGGATTTTAAATTTTTCATTCCTTATTCCTTATTC</canonical>
            <polymorphic>CTCAACACTACGTCCAAAATACTTGATAGAGCTACATCAGACGAATCGCCATCAGGAATGTATAAGCTGAATCCCTTCGACAAGAAGAAAACTTCAAAGAGAATGATAATGAAAGAGAGCTATTATAAACTGGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATCTCAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGTACCTTCTCAACAAAATTTGAATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAMAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGACACTTATTCTACACTGTTAAGTGCATACTCTTGCTCTGAAAAAATACTTCCATCAACTTTCCTGTCCAAAATTTGATTGTTTTCCTCTCGTTTGAAGAATCAATAGTGTTTCTTATCTTTTTTCACATTTTCTGAAAGATTATAACAGTATTATCGAAGATTTAGAATAAATAAGAGGAATAAATGTTTGCGATAACAACACTGAAAACTCAAAAAGTGACACAATCAAAAGTCTTCAAACAATATTGTTTTTTCAATGCGATTTTTTTCTCTGCTCGAATCTACAAAAATTTTACGATCATTTTTAGAATTCATCGCTGTTTGTGTACCAGACATGAGCGGAATTCCATATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCGGATTTTAAATTTTTCATTCCTTATTCCTTATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAGCATTCAAAACATTCACTT</pcr_primer_p1>
		<pcr_primer_p2>GTGTCTGTAAGTATCAAGCTGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGACAC</canonical_amplicon>
		<polymorphic_amplicon>TTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAMAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26011</snp_id>
        <super_contig>c002000444.Contig4</super_contig>
        <contig_pos>58696</contig_pos>
        <strand>+</strand>
        <context>TCTTGCTCTG[A/G]AAAAATACTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATACTTACAGACACTTATTCTACACTGTTAAGTGCATACTCTTGCTCTG</left_flank>
        <right_flank>AAAAATACTTCCATCAACTTTCCTGTCCAAAATTTGATTGTTTTCCTCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTCAAAGAGAATGATAATGAAAGAGAGCTATTATAAACTGGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATCTCAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGTACCTTCTCAACAAAATTTGAATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGACACTTATTCTACACTGTTAAGTGCATACTCTTGCTCTGAAAAAATACTTCCATCAACTTTCCTGTCCAAAATTTGATTGTTTTCCTCTCGTTTGAAGAATCAATAGTGTTTCTTATCTTTTTTCACATTTTCTGAAAGATTATAACAGTATTATCGAAGATTTAGAATAAATAAGAGGAATAAATGTTTGCGATAACAACACTGAAAACTCAAAAAGTGACACAATCAAAAGTCTTCAAACAATATTGTTTTTTCAATGCGATTTTTTTCTCTGCTCGAATCTACAAAAATTTTACGATCATTTTTAGAATTCATCGCTGTTTGTGTACCAGACATGAGCGGAATTCCATATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCGGATTTTAAATTTTTCATTCCTTATTCCTTATTCCTGTTTTTTTGTTATTCCTCTTCAAAAATTTAAAACTTTTTCTATCAAAAATCAGAAAAAAATTCTCAAAACTGGGAAACAAATTTGAAC</canonical>
            <polymorphic>ACTTCAAAGAGAATGATAATGAAAGAGAGCTATTATAAACTGGAGACACCCGCGGAAATACTTCTGATTCCTCTAAACGTGTTGAGAAATCTCAACTAGCCAACGCGTCAAGCTATTTGGCAAAGAAGTTTGACAGCAGTAAAAGGACACGAGTACCTTCTCAACAAAATTTGAATGAAAGCAAACCATTTTGAAGTGGGGATAATGACTTTGTTTTAGCATTCAAAACATTCACTTTTTTTCAGCAAAAAGTAAGCCTACTGTGGTGGACGAACCTTCAGATGACGGATACAAGAACGTAGACGCAGTCGAAAAGTTATTATTGTTCTCAATTTCGTTTTTATAGAATTTTATAATTTGCATCACTTATTGTTAATTTTTTAAAAAAGTCACAAATAAATTTAATTGAGAGAAAAATATTGTATTAGAAACATAGATAACACCAGCTTGATACTTACAGACACTTATTCTACACTGTTAAGTGCATACTCTTGCTCTGRAAAAATACTTCCATCAACTTTCCTGTCCAAAATTTGATTGTTTTCCTCTCGTTTGAAGAATCAATAGTGTTTCTTATCTTTTTTCACATTTTCTGAAAGATTATAACAGTATTATCGAAGATTTAGAATAAATAAGAGGAATAAATGTTTGCGATAACAACACTGAAAACTCAAAAAGTGACACAATCAAAAGTCTTCAAACAATATTGTTTTTTCAATGCGATTTTTTTCTCTGCTCGAATCTACAAAAATTTTACGATCATTTTTAGAATTCATCGCTGTTTGTGTACCAGACATGAGCGGAATTCCATATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTATTCCGGATTTTAAATTTTTCATTCCTTATTCCTTATTCCTGTTTTTTTGTTATTCCTCTTCAAAAATTTAAAACTTTTTCTATCAAAAATCAGAAAAAAATTCTCAAAACTGGGAAACAAATTTGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>370 218 215 96 65 36</canonical_bands>
                <polymorphic_bands>370 314 215 65 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACACCAGCTTGATACTTACAGAC</pcr_primer_p1>
		<pcr_primer_p2>GATTGTGTCACTTTTTGAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACACCAGCTTGATACTTACAGACACTTATTCTACACTGTTAAGTGCATACTCTTGCTCTGAAAAAATACTTCCATCAACTTTCCTGTCCAAAATTTGATTGTTTTCCTCTCGTTTGAAGAATCAATAGTGTTTCTTATCTTTTTTCACATTTTCTGAAAGATTATAACAGTATTATCGAAGATTTAGAATAAATAAGAGGAATAAATGTTTGCGATAACAACACTGAAAACTCAAAAAGTGACACAATC</canonical_amplicon>
		<polymorphic_amplicon>ACACCAGCTTGATACTTACAGACACTTATTCTACACTGTTAAGTGCATACTCTTGCTCTGRAAAAATACTTCCATCAACTTTCCTGTCCAAAATTTGATTGTTTTCCTCTCGTTTGAAGAATCAATAGTGTTTCTTATCTTTTTTCACATTTTCTGAAAGATTATAACAGTATTATCGAAGATTTAGAATAAATAAGAGGAATAAATGTTTGCGATAACAACACTGAAAACTCAAAAAGTGACACAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26012</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>17329</contig_pos>
        <strand>+</strand>
        <context>AGTTGTTGAG[G/T]CCCCACCCCC</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATCATTGAGTCTCTCCGTTTAGTAACTTATCGACAACTTTAGTTGTTGAG</left_flank>
        <right_flank>CCCCACCCCCTTGTATTTGTACTTACGGTGTAAAAATACAGAAAGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAATTTACAAATTCGGTTGGCTGGGTCGGCGATTTTCGACCAACCGAAATGGAAGACTCAACTTTGAATATATTTAGAATCCAGAATTTTTTTTTTTGAAAATCTGACTTTCAGATCTTCGCCGATTTCGACCACCTTCGCGCCAGACGTGACGTTGTTGAAGCTTCAGGAGAAGGATCCGGAGAATCATCTGGAGAGAAAATCGTAGAATCTTCCGGAGAAGGATCCGGGGAATCTTCTGGAGACAAGATCGTTGAGGCTTCTGGAGAGGGAAGTGGAGAAGGATCGGGAGCCTCTGATGCTGTTCTCGAATCATCTGGAGAAGGATCCGGAGAAAACTTGAGCAATGGAATCGTTGCTTCCGATGCCCCAAAGGACGTGAAAGCTTTGACCGCTTCTGAATTCGCCGTCTCCGTTTAAGATCTTCATTTTGGTTTCTTTTTTTTTAATCATTGAGTCTCTCCGTTTAGTAACTTATCGACAACTTTAGTTGTTGAGCCCCCACCCCCTTGTATTTGTACTTACGGTGTAAAAATACAGAAAGAAAAAGATTAAAAAAAAGCATTTTTAAAGAAAAATGAAAATTTATACAATTCGTTAAACTTCATTCAACAATTCGGCTTTCGGCGCGAGTTCGGTCAACAATGACAACATCATTGCAGTCGCTGAGAGTGTCTGAAAATGAATTAGACGTTTTAGATTAACTAGAATGACTCACTCCCAAAATAAGAGGTCTCGATAAAAGGGCGAAACCCCAAACAGAGACGCCCAAATCGAATTGTTCCATATGAGAACAAAGGGTGTTAGCAATTAGGTATACTTCTTTTCGATATGGGAACCAGATGGATCGGTTCTGGCACAGATAGCCTTTCGAGCGACAGATCTGAAAAGTATGAGGTGCTGAAAGTCGTGAAAAAAGTACAAGTTTTGAAAACAGAAGCTTCATTCTATAGTTCAAAAAAATTCCGGTCTTCTTTAAAATTTCCAGGCTCTCGCTCA</canonical>
            <polymorphic>CAAATTTACAAATTCGGTTGGCTGGGTCGGCGATTTTCGACCAACCGAAATGGAAGACTCAACTTTGAATATATTTAGAATCCAGAATTTTTTTTTTTGAAAATCTGACTTTCAGATCTTCGCCGATTTCGACCACCTTCGCGCCAGACGTGACGTTGTTGAAGCTTCAGGAGAAGGATCCGGAGAATCATCTGGAGAGAAAATCGTAGAATCTTCCGGAGAAGGATCCGGGGAATCTTCTGGAGACAAGATCGTTGAGGCTTCTGGAGAGGGAAGTGGAGAAGGATCGGGAGCCTCTGATGCTGTTCTCGAATCATCTGGAGAAGGATCCGGAGAAAACTTGAGCAATGGAATCGTTGCTTCCGATGCCCCAAAGGACGTGAAAGCTTTGACCGCTTCTGAATTCGCCGTCTCCGTTTAAGATCTTCATTTTGGTTTCTTTTTTTTTAATCATTGAGTCTCTCCGTTTAGTAACTTATCGACAACTTTAGTTGTTGAGKCCCCACCCCCTTGTATTTGTACTTACGGTGTAAAAATACAGAAAGAAAAAGATTAAAAAAAAGCATTTTTAAAGAAAAATGAAAATTTATACAATTCGTTAAACTTCATTCAACAATTCGGCTTTCGGCGCGAGTTCGGTCAACAATGACAACATCATTGCAGTCGCTGAGAGTGTCTGAAAATGAATTAGACGTTTTAGATTAACTAGAATGACTCACTCCCAAAATAAGAGGTCTCGATAAAAGGGCGAAACCCCAAACAGAGACGCCCAAATCGAATTGTTCCATATGAGAACAAAGGGTGTTAGCAATTAGGTATACTTCTTTTCGATATGGGAACCAGATGGATCGGTTCTGGCACAGATAGCCTTTCGAGCGACAGATCTGAAAAGTATGAGGTGCTGAAAGTCGTGAAAAAAGTACAAGTTTTGAAAACAGAAGCTTCATTCTATAGTTCAAAAAAATTCCGGTCTTCTTTAAAATTTCCAGGCTCTCGCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>246 143 122 113 96 93 74 49 33 21 10</canonical_bands>
                <polymorphic_bands>246 235 143 96 93 74 49 33 21 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCATTGAGTCTCTCCGTTTA</pcr_primer_p1>
		<pcr_primer_p2>AAAACGTCTAATTCATTTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCATTGAGTCTCTCCGTTTAGTAACTTATCGACAACTTTAGTTGTTGAGCCCCCACCCCCTTGTATTTGTACTTACGGTGTAAAAATACAGAAAGAAAAAGATTAAAAAAAAGCATTTTTAAAGAAAAATGAAAATTTATACAATTCGTTAAACTTCATTCAACAATTCGGCTTTCGGCGCGAGTTCGGTCAACAATGACAACATCATTGCAGTCGCTGAGAGTGTCTGAAAATGAATTAGACGTTTT</canonical_amplicon>
		<polymorphic_amplicon>AATCATTGAGTCTCTCCGTTTAGTAACTTATCGACAACTTTAGTTGTTGAGKCCCCACCCCCTTGTATTTGTACTTACGGTGTAAAAATACAGAAAGAAAAAGATTAAAAAAAAGCATTTTTAAAGAAAAATGAAAATTTATACAATTCGTTAAACTTCATTCAACAATTCGGCTTTCGGCGCGAGTTCGGTCAACAATGACAACATCATTGCAGTCGCTGAGAGTGTCTGAAAATGAATTAGACGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26013</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>17399</contig_pos>
        <strand></strand>
        <context>AAAGCATTTT[T/A]AARRAAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TACTTACGGTGTAAAAATACAGAAAGAAAAAGATTAAAAAAAAGCATTTT</left_flank>
        <right_flank>AAAGAAAAATGAAAATTTATACAATTCGTTAAACTTCATTCAACAATTCG</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATTTAGAATCCAGAATTTTTTTTTTTGAAAATCTGACTTTCAGATCTTCGCCGATTTCGACCACCTTCGCGCCAGACGTGACGTTGTTGAAGCTTCAGGAGAAGGATCCGGAGAATCATCTGGAGAGAAAATCGTAGAATCTTCCGGAGAAGGATCCGGGGAATCTTCTGGAGACAAGATCGTTGAGGCTTCTGGAGAGGGAAGTGGAGAAGGATCGGGAGCCTCTGATGCTGTTCTCGAATCATCTGGAGAAGGATCCGGAGAAAACTTGAGCAATGGAATCGTTGCTTCCGATGCCCCAAAGGACGTGAAAGCTTTGACCGCTTCTGAATTCGCCGTCTCCGTTTAAGATCTTCATTTTGGTTTCTTTTTTTTTAATCATTGAGTCTCTCCGTTTAGTAACTTATCGACAACTTTAGTTGTTGAGCCCCCACCCCCTTGTATTTGTACTTACGGTGTAAAAATACAGAAAGAAAAAGATTAAAAAAAAGCATTTTTAAAGAAAAATGAAAATTTATACAATTCGTTAAACTTCATTCAACAATTCGGCTTTCGGCGCGAGTTCGGTCAACAATGACAACATCATTGCAGTCGCTGAGAGTGTCTGAAAATGAATTAGACGTTTTAGATTAACTAGAATGACTCACTCCCAAAATAAGAGGTCTCGATAAAAGGGCGAAACCCCAAACAGAGACGCCCAAATCGAATTGTTCCATATGAGAACAAAGGGTGTTAGCAATTAGGTATACTTCTTTTCGATATGGGAACCAGATGGATCGGTTCTGGCACAGATAGCCTTTCGAGCGACAGATCTGAAAAGTATGAGGTGCTGAAAGTCGTGAAAAAAGTACAAGTTTTGAAAACAGAAGCTTCATTCTATAGTTCAAAAAAATTCCGGTCTTCTTTAAAATTTCCAGGCTCTCGCTCAAAAATTTTTTTTGTATTTTTCCCATTAAAATGTTCTTTATTTATGTACTACTCTGATCTAATTTCAATTC</canonical>
            <polymorphic>ATATTTAGAATCCAGAATTTTTTTTTTTGAAAATCTGACTTTCAGATCTTCGCCGATTTCGACCACCTTCGCGCCAGACGTGACGTTGTTGAAGCTTCAGGAGAAGGATCCGGAGAATCATCTGGAGAGAAAATCGTAGAATCTTCCGGAGAAGGATCCGGGGAATCTTCTGGAGACAAGATCGTTGAGGCTTCTGGAGAGGGAAGTGGAGAAGGATCGGGAGCCTCTGATGCTGTTCTCGAATCATCTGGAGAAGGATCCGGAGAAAACTTGAGCAATGGAATCGTTGCTTCCGATGCCCCAAAGGACGTGAAAGCTTTGACCGCTTCTGAATTCGCCGTCTCCGTTTAAGATCTTCATTTTGGTTTCTTTTTTTTTAATCATTGAGTCTCTCCGTTTAGTAACTTATCGACAACTTTAGTTGTTGAGCCCCCACCCCCTTGTATTTGTACTTACGGTGTAAAAATACAGAAAGAAAAAGATTAAAAAAAAGCATTTTWAAAGAAAAATGAAAATTTATACAATTCGTTAAACTTCATTCAACAATTCGGCTTTCGGCGCGAGTTCGGTCAACAATGACAACATCATTGCAGTCGCTGAGAGTGTCTGAAAATGAATTAGACGTTTTAGATTAACTAGAATGACTCACTCCCAAAATAAGAGGTCTCGATAAAAGGGCGAAACCCCAAACAGAGACGCCCAAATCGAATTGTTCCATATGAGAACAAAGGGTGTTAGCAATTAGGTATACTTCTTTTCGATATGGGAACCAGATGGATCGGTTCTGGCACAGATAGCCTTTCGAGCGACAGATCTGAAAAGTATGAGGTGCTGAAAGTCGTGAAAAAAGTACAAGTTTTGAAAACAGAAGCTTCATTCTATAGTTCAAAAAAATTCCGGTCTTCTTTAAAATTTCCAGGCTCTCGCTCAAAAATTTTTTTTGTATTTTTCCCATTAAAATGTTCTTTATTTATGTACTACTCTGATCTAATTTCAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 408 92</canonical_bands>
                <polymorphic_bands>908 92</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>348 275 106 103 48 45 30 29 16</canonical_bands>
                <polymorphic_bands>348 275 106 103 48 46 45 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATTGAGTCTCTCCGTTTAGTA</pcr_primer_p1>
		<pcr_primer_p2>AAAACGTCTAATTCATTTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCATTGAGTCTCTCCGTTTAGTAACTTATCGACAACTTTAGTTGTTGAGCCCCCACCCCCTTGTATTTGTACTTACGGTGTAAAAATACAGAAAGAAAAAGATTAAAAAAAAGCATTTTTAAAGAAAAATGAAAATTTATACAATTCGTTAAACTTCATTCAACAATTCGGCTTTCGGCGCGAGTTCGGTCAACAATGACAACATCATTGCAGTCGCTGAGAGTGTCTGAAAATGAATTAGACGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TCATTGAGTCTCTCCGTTTAGTAACTTATCGACAACTTTAGTTGTTGAGCCCCCACCCCCTTGTATTTGTACTTACGGTGTAAAAATACAGAAAGAAAAAGATTAAAAAAAAGCATTTTWAAAGAAAAATGAAAATTTATACAATTCGTTAAACTTCATTCAACAATTCGGCTTTCGGCGCGAGTTCGGTCAACAATGACAACATCATTGCAGTCGCTGAGAGTGTCTGAAAATGAATTAGACGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26014</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>17402</contig_pos>
        <strand></strand>
        <context>GCATTTTWAA[A/G]RAAAAATGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTACGGTGTAAAAATACAGAAAGAAAAAGATTAAAAAAAAGCATTTTTAA</left_flank>
        <right_flank>GAAAAATGAAAATTTATACAATTCGTTAAACTTCATTCAACAATTCGGCT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAGAATCCAGAATTTTTTTTTTTGAAAATCTGACTTTCAGATCTTCGCCGATTTCGACCACCTTCGCGCCAGACGTGACGTTGTTGAAGCTTCAGGAGAAGGATCCGGAGAATCATCTGGAGAGAAAATCGTAGAATCTTCCGGAGAAGGATCCGGGGAATCTTCTGGAGACAAGATCGTTGAGGCTTCTGGAGAGGGAAGTGGAGAAGGATCGGGAGCCTCTGATGCTGTTCTCGAATCATCTGGAGAAGGATCCGGAGAAAACTTGAGCAATGGAATCGTTGCTTCCGATGCCCCAAAGGACGTGAAAGCTTTGACCGCTTCTGAATTCGCCGTCTCCGTTTAAGATCTTCATTTTGGTTTCTTTTTTTTTAATCATTGAGTCTCTCCGTTTAGTAACTTATCGACAACTTTAGTTGTTGAGCCCCCACCCCCTTGTATTTGTACTTACGGTGTAAAAATACAGAAAGAAAAAGATTAAAAAAAAGCATTTTTAAAGAAAAATGAAAATTTATACAATTCGTTAAACTTCATTCAACAATTCGGCTTTCGGCGCGAGTTCGGTCAACAATGACAACATCATTGCAGTCGCTGAGAGTGTCTGAAAATGAATTAGACGTTTTAGATTAACTAGAATGACTCACTCCCAAAATAAGAGGTCTCGATAAAAGGGCGAAACCCCAAACAGAGACGCCCAAATCGAATTGTTCCATATGAGAACAAAGGGTGTTAGCAATTAGGTATACTTCTTTTCGATATGGGAACCAGATGGATCGGTTCTGGCACAGATAGCCTTTCGAGCGACAGATCTGAAAAGTATGAGGTGCTGAAAGTCGTGAAAAAAGTACAAGTTTTGAAAACAGAAGCTTCATTCTATAGTTCAAAAAAATTCCGGTCTTCTTTAAAATTTCCAGGCTCTCGCTCAAAAATTTTTTTTGTATTTTTCCCATTAAAATGTTCTTTATTTATGTACTACTCTGATCTAATTTCAATTCGAG</canonical>
            <polymorphic>TTTAGAATCCAGAATTTTTTTTTTTGAAAATCTGACTTTCAGATCTTCGCCGATTTCGACCACCTTCGCGCCAGACGTGACGTTGTTGAAGCTTCAGGAGAAGGATCCGGAGAATCATCTGGAGAGAAAATCGTAGAATCTTCCGGAGAAGGATCCGGGGAATCTTCTGGAGACAAGATCGTTGAGGCTTCTGGAGAGGGAAGTGGAGAAGGATCGGGAGCCTCTGATGCTGTTCTCGAATCATCTGGAGAAGGATCCGGAGAAAACTTGAGCAATGGAATCGTTGCTTCCGATGCCCCAAAGGACGTGAAAGCTTTGACCGCTTCTGAATTCGCCGTCTCCGTTTAAGATCTTCATTTTGGTTTCTTTTTTTTTAATCATTGAGTCTCTCCGTTTAGTAACTTATCGACAACTTTAGTTGTTGAGCCCCCACCCCCTTGTATTTGTACTTACGGTGTAAAAATACAGAAAGAAAAAGATTAAAAAAAAGCATTTTTAARGAAAAATGAAAATTTATACAATTCGTTAAACTTCATTCAACAATTCGGCTTTCGGCGCGAGTTCGGTCAACAATGACAACATCATTGCAGTCGCTGAGAGTGTCTGAAAATGAATTAGACGTTTTAGATTAACTAGAATGACTCACTCCCAAAATAAGAGGTCTCGATAAAAGGGCGAAACCCCAAACAGAGACGCCCAAATCGAATTGTTCCATATGAGAACAAAGGGTGTTAGCAATTAGGTATACTTCTTTTCGATATGGGAACCAGATGGATCGGTTCTGGCACAGATAGCCTTTCGAGCGACAGATCTGAAAAGTATGAGGTGCTGAAAGTCGTGAAAAAAGTACAAGTTTTGAAAACAGAAGCTTCATTCTATAGTTCAAAAAAATTCCGGTCTTCTTTAAAATTTCCAGGCTCTCGCTCAAAAATTTTTTTTGTATTTTTCCCATTAAAATGTTCTTTATTTATGTACTACTCTGATCTAATTTCAATTCGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>497 408 95</canonical_bands>
                <polymorphic_bands>905 95</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATTGAGTCTCTCCGTTTAGTA</pcr_primer_p1>
		<pcr_primer_p2>AAAACGTCTAATTCATTTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCATTGAGTCTCTCCGTTTAGTAACTTATCGACAACTTTAGTTGTTGAGCCCCCACCCCCTTGTATTTGTACTTACGGTGTAAAAATACAGAAAGAAAAAGATTAAAAAAAAGCATTTTTAAAGAAAAATGAAAATTTATACAATTCGTTAAACTTCATTCAACAATTCGGCTTTCGGCGCGAGTTCGGTCAACAATGACAACATCATTGCAGTCGCTGAGAGTGTCTGAAAATGAATTAGACGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TCATTGAGTCTCTCCGTTTAGTAACTTATCGACAACTTTAGTTGTTGAGCCCCCACCCCCTTGTATTTGTACTTACGGTGTAAAAATACAGAAAGAAAAAGATTAAAAAAAAGCATTTTTAARGAAAAATGAAAATTTATACAATTCGTTAAACTTCATTCAACAATTCGGCTTTCGGCGCGAGTTCGGTCAACAATGACAACATCATTGCAGTCGCTGAGAGTGTCTGAAAATGAATTAGACGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26015</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>17403</contig_pos>
        <strand></strand>
        <context>CATTTTWAAR[G/A]AAAAATGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TACGGTGTAAAAATACAGAAAGAAAAAGATTAAAAAAAAGCATTTTTAAA</left_flank>
        <right_flank>AAAAATGAAAATTTATACAATTCGTTAAACTTCATTCAACAATTCGGCTT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGAATCCAGAATTTTTTTTTTTGAAAATCTGACTTTCAGATCTTCGCCGATTTCGACCACCTTCGCGCCAGACGTGACGTTGTTGAAGCTTCAGGAGAAGGATCCGGAGAATCATCTGGAGAGAAAATCGTAGAATCTTCCGGAGAAGGATCCGGGGAATCTTCTGGAGACAAGATCGTTGAGGCTTCTGGAGAGGGAAGTGGAGAAGGATCGGGAGCCTCTGATGCTGTTCTCGAATCATCTGGAGAAGGATCCGGAGAAAACTTGAGCAATGGAATCGTTGCTTCCGATGCCCCAAAGGACGTGAAAGCTTTGACCGCTTCTGAATTCGCCGTCTCCGTTTAAGATCTTCATTTTGGTTTCTTTTTTTTTAATCATTGAGTCTCTCCGTTTAGTAACTTATCGACAACTTTAGTTGTTGAGCCCCCACCCCCTTGTATTTGTACTTACGGTGTAAAAATACAGAAAGAAAAAGATTAAAAAAAAGCATTTTTAAAGAAAAATGAAAATTTATACAATTCGTTAAACTTCATTCAACAATTCGGCTTTCGGCGCGAGTTCGGTCAACAATGACAACATCATTGCAGTCGCTGAGAGTGTCTGAAAATGAATTAGACGTTTTAGATTAACTAGAATGACTCACTCCCAAAATAAGAGGTCTCGATAAAAGGGCGAAACCCCAAACAGAGACGCCCAAATCGAATTGTTCCATATGAGAACAAAGGGTGTTAGCAATTAGGTATACTTCTTTTCGATATGGGAACCAGATGGATCGGTTCTGGCACAGATAGCCTTTCGAGCGACAGATCTGAAAAGTATGAGGTGCTGAAAGTCGTGAAAAAAGTACAAGTTTTGAAAACAGAAGCTTCATTCTATAGTTCAAAAAAATTCCGGTCTTCTTTAAAATTTCCAGGCTCTCGCTCAAAAATTTTTTTTGTATTTTTCCCATTAAAATGTTCTTTATTTATGTACTACTCTGATCTAATTTCAATTCGAGA</canonical>
            <polymorphic>TTAGAATCCAGAATTTTTTTTTTTGAAAATCTGACTTTCAGATCTTCGCCGATTTCGACCACCTTCGCGCCAGACGTGACGTTGTTGAAGCTTCAGGAGAAGGATCCGGAGAATCATCTGGAGAGAAAATCGTAGAATCTTCCGGAGAAGGATCCGGGGAATCTTCTGGAGACAAGATCGTTGAGGCTTCTGGAGAGGGAAGTGGAGAAGGATCGGGAGCCTCTGATGCTGTTCTCGAATCATCTGGAGAAGGATCCGGAGAAAACTTGAGCAATGGAATCGTTGCTTCCGATGCCCCAAAGGACGTGAAAGCTTTGACCGCTTCTGAATTCGCCGTCTCCGTTTAAGATCTTCATTTTGGTTTCTTTTTTTTTAATCATTGAGTCTCTCCGTTTAGTAACTTATCGACAACTTTAGTTGTTGAGCCCCCACCCCCTTGTATTTGTACTTACGGTGTAAAAATACAGAAAGAAAAAGATTAAAAAAAAGCATTTTTAAARAAAAATGAAAATTTATACAATTCGTTAAACTTCATTCAACAATTCGGCTTTCGGCGCGAGTTCGGTCAACAATGACAACATCATTGCAGTCGCTGAGAGTGTCTGAAAATGAATTAGACGTTTTAGATTAACTAGAATGACTCACTCCCAAAATAAGAGGTCTCGATAAAAGGGCGAAACCCCAAACAGAGACGCCCAAATCGAATTGTTCCATATGAGAACAAAGGGTGTTAGCAATTAGGTATACTTCTTTTCGATATGGGAACCAGATGGATCGGTTCTGGCACAGATAGCCTTTCGAGCGACAGATCTGAAAAGTATGAGGTGCTGAAAGTCGTGAAAAAAGTACAAGTTTTGAAAACAGAAGCTTCATTCTATAGTTCAAAAAAATTCCGGTCTTCTTTAAAATTTCCAGGCTCTCGCTCAAAAATTTTTTTTGTATTTTTCCCATTAAAATGTTCTTTATTTATGTACTACTCTGATCTAATTTCAATTCGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTGAGTCTCTCCGTTTAGTA</pcr_primer_p1>
		<pcr_primer_p2>AAAACGTCTAATTCATTTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCATTGAGTCTCTCCGTTTAGTAACTTATCGACAACTTTAGTTGTTGAGCCCCCACCCCCTTGTATTTGTACTTACGGTGTAAAAATACAGAAAGAAAAAGATTAAAAAAAAGCATTTTTAAAGAAAAATGAAAATTTATACAATTCGTTAAACTTCATTCAACAATTCGGCTTTCGGCGCGAGTTCGGTCAACAATGACAACATCATTGCAGTCGCTGAGAGTGTCTGAAAATGAATTAGACGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TCATTGAGTCTCTCCGTTTAGTAACTTATCGACAACTTTAGTTGTTGAGCCCCCACCCCCTTGTATTTGTACTTACGGTGTAAAAATACAGAAAGAAAAAGATTAAAAAAAAGCATTTTTAAARAAAAATGAAAATTTATACAATTCGTTAAACTTCATTCAACAATTCGGCTTTCGGCGCGAGTTCGGTCAACAATGACAACATCATTGCAGTCGCTGAGAGTGTCTGAAAATGAATTAGACGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26016</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>60289</contig_pos>
        <strand></strand>
        <context>TCATTGGAAC[A/C]ATCAACTATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCCAATTGCACTTTAATCTATCAATTTGTTTTTTGATGATTCATTGGAAC</left_flank>
        <right_flank>ATCAACTATCATTCTTTTTATTTTTTTTCGTTTGTATCTTCTCACCATGA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAAATCGAAAACCCAATTTCCAGTCAAGAATGTGTACTTTTTTTTTATTAATTAGACTTCCAGAACAGCTGAAAATTCCTTTCGCGACTGAAAATGTCGATGTTTCCATAGTTCACTCCAACGCTTTAGAATCTTTCAAAAGTGTCCAATTTTCTCTAAACCCTCTCATTTTTTATCCAATATCACTGATAGAAAAAAAGGATACGGATGGCTGATTGTGTCTTCTCAAGTGAAAAGGAAAAGTGAAAAGTTCATCGGCTAGGTGGAACGCGTTCAGACACGACAGAGATATGATAAGCCTTCAAGGTTGTCTCTATATTTTCTTTTCATAAAAATAGAATACTATTTCAAAATCAGTTCAACGTACCTACAGTATCCCTTTCAAAGACCAAAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCACCCAATTGCACTTTAATCTATCAATTTGTTTTTTGATGATTCATTGGAACAATCAACTATCATTCTTTTTATTTTTTTTCGTTTGTATCTTCTCACCATGACAACTATATTTATTTTTTCATGCTTCAGAGTGTCTCTTCTGCCAGTGTCTTCGTCTTCTTCAAAATCTTTAAAAATAGATTCCCATCTATTTTTCTTCATCTCCTTCACACCGTTTGCCCTCACGAAGCTGCAGGAGGAGACGAAGAATAATTGGAATAAGGAAAAGAAGAAGCAGAAGACGTTGGATTTCTTTTCGGACGTCTTCATTAAAAGAAGGTTCAAAGAAGACGTCATCGTTCCGAGGATACAACCACAACCACACCGTCAACACATCTGAAAGAAAATAGAGGAAAAGATAGAAGCAGAGAGTTGCGGGTGAGTCTTGTCTAGTCTATGTAGCTGAAAAGTCATGACGACATCCGTTTCGGATATAGCAAAGTTAATTGGAAATGGGTTGGAAAAATAATCCGGAAAAAATGTGAGATAGGGGATGTATATAACCCACGTGC</canonical>
            <polymorphic>ACAAAATCGAAAACCCAATTTCCAGTCAAGAATGTGTACTTTTTTTTTATTAATTAGACTTCCAGAACAGCTGAAAATTCCTTTCGCGACTGAAAATGTCGATGTTTCCATAGTTCACTCCAACGCTTTAGAATCTTTCAAAAGTGTCCAATTTTCTCTAAACCCTCTCATTTTTTATCCAATATCACTGATAGAAAAAAAGGATACGGATGGCTGATTGTGTCTTCTCAAGTGAAAAGGAAAAGTGAAAAGTTCATCGGCTAGGTGGAACGCGTTCAGACACGACAGAGATATGATAAGCCTTCAAGGTTGTCTCTATATTTTCTTTTCATAAAAATAGAATACTATTTCAAAATCAGTTCAACGTACCTACAGTATCCCTTTCAAAGACCAAAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCACCCAATTGCACTTTAATCTATCAATTTGTTTTTTGATGATTCATTGGAACMATCAACTATCATTCTTTTTATTTTTTTTCGTTTGTATCTTCTCACCATGACAACTATATTTATTTTTTCATGCTTCAGAGTGTCTCTTCTGCCAGTGTCTTCGTCTTCTTCAAAATCTTTAAAAATAGATTCCCATCTATTTTTCTTCATCTCCTTCACACCGTTTGCCCTCACGAAGCTGCAGGAGGAGACGAAGAATAATTGGAATAAGGAAAAGAAGAAGCAGAAGACGTTGGATTTCTTTTCGGACGTCTTCATTAAAAGAAGGTTCAAAGAAGACGTCATCGTTCCGAGGATACAACCACAACCACACCGTCAACACATCTGAAAGAAAATAGAGGAAAAGATAGAAGCAGAGAGTTGCGGGTGAGTCTTGTCTAGTCTATGTAGCTGAAAAGTCATGACGACATCCGTTTCGGATATAGCAAAGTTAATTGGAAATGGGTTGGAAAAATAATCCGGAAAAAATGTGAGATAGGGGATGTATATAACCCACGTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCAGTTCAACGTACCTACAG</pcr_primer_p1>
		<pcr_primer_p2>GAAGACACTGGCAGAAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATCAGTTCAACGTACCTACAGTATCCCTTTCAAAGACCAAAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCACCCAATTGCACTTTAATCTATCAATTTGTTTTTTGATGATTCATTGGAACAATCAACTATCATTCTTTTTATTTTTTTTCGTTTGTATCTTCTCACCATGACAACTATATTTATTTTTTCATGCTTCAGAGTGTCTCTTCTGCCAGTGTCTTC</canonical_amplicon>
		<polymorphic_amplicon>AAATCAGTTCAACGTACCTACAGTATCCCTTTCAAAGACCAAAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCACCCAATTGCACTTTAATCTATCAATTTGTTTTTTGATGATTCATTGGAACMATCAACTATCATTCTTTTTATTTTTTTTCGTTTGTATCTTCTCACCATGACAACTATATTTATTTTTTCATGCTTCAGAGTGTCTCTTCTGCCAGTGTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26017</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>60397</contig_pos>
        <strand></strand>
        <context>TCTTCGTCTT[C/T]TTCAAAATCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTATTTTTTCATGCTTCAGAGTGTCTCTTCTGCCAGTGTCTTCGTCTT</left_flank>
        <right_flank>TTCAAAATCTTTAAAAATAGATTCCCATCTATTTTTCTTCATCTCCTTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATAGTTCACTCCAACGCTTTAGAATCTTTCAAAAGTGTCCAATTTTCTCTAAACCCTCTCATTTTTTATCCAATATCACTGATAGAAAAAAAGGATACGGATGGCTGATTGTGTCTTCTCAAGTGAAAAGGAAAAGTGAAAAGTTCATCGGCTAGGTGGAACGCGTTCAGACACGACAGAGATATGATAAGCCTTCAAGGTTGTCTCTATATTTTCTTTTCATAAAAATAGAATACTATTTCAAAATCAGTTCAACGTACCTACAGTATCCCTTTCAAAGACCAAAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCACCCAATTGCACTTTAATCTATCAATTTGTTTTTTGATGATTCATTGGAACAATCAACTATCATTCTTTTTATTTTTTTTCGTTTGTATCTTCTCACCATGACAACTATATTTATTTTTTCATGCTTCAGAGTGTCTCTTCTGCCAGTGTCTTCGTCTTCTTCAAAATCTTTAAAAATAGATTCCCATCTATTTTTCTTCATCTCCTTCACACCGTTTGCCCTCACGAAGCTGCAGGAGGAGACGAAGAATAATTGGAATAAGGAAAAGAAGAAGCAGAAGACGTTGGATTTCTTTTCGGACGTCTTCATTAAAAGAAGGTTCAAAGAAGACGTCATCGTTCCGAGGATACAACCACAACCACACCGTCAACACATCTGAAAGAAAATAGAGGAAAAGATAGAAGCAGAGAGTTGCGGGTGAGTCTTGTCTAGTCTATGTAGCTGAAAAGTCATGACGACATCCGTTTCGGATATAGCAAAGTTAATTGGAAATGGGTTGGAAAAATAATCCGGAAAAAATGTGAGATAGGGGATGTATATAACCCACGTGCGCTCGGAGGTTGAATCCATATATGTTCCATTTGCGCTCAATTATCTCGGCTCCTATCAAAGATATTAAAAATTTGGCACCTGATAAAATATTGGATATGTTATGATAC</canonical>
            <polymorphic>CATAGTTCACTCCAACGCTTTAGAATCTTTCAAAAGTGTCCAATTTTCTCTAAACCCTCTCATTTTTTATCCAATATCACTGATAGAAAAAAAGGATACGGATGGCTGATTGTGTCTTCTCAAGTGAAAAGGAAAAGTGAAAAGTTCATCGGCTAGGTGGAACGCGTTCAGACACGACAGAGATATGATAAGCCTTCAAGGTTGTCTCTATATTTTCTTTTCATAAAAATAGAATACTATTTCAAAATCAGTTCAACGTACCTACAGTATCCCTTTCAAAGACCAAAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCACCCAATTGCACTTTAATCTATCAATTTGTTTTTTGATGATTCATTGGAACAATCAACTATCATTCTTTTTATTTTTTTTCGTTTGTATCTTCTCACCATGACAACTATATTTATTTTTTCATGCTTCAGAGTGTCTCTTCTGCCAGTGTCTTCGTCTTYTTCAAAATCTTTAAAAATAGATTCCCATCTATTTTTCTTCATCTCCTTCACACCGTTTGCCCTCACGAAGCTGCAGGAGGAGACGAAGAATAATTGGAATAAGGAAAAGAAGAAGCAGAAGACGTTGGATTTCTTTTCGGACGTCTTCATTAAAAGAAGGTTCAAAGAAGACGTCATCGTTCCGAGGATACAACCACAACCACACCGTCAACACATCTGAAAGAAAATAGAGGAAAAGATAGAAGCAGAGAGTTGCGGGTGAGTCTTGTCTAGTCTATGTAGCTGAAAAGTCATGACGACATCCGTTTCGGATATAGCAAAGTTAATTGGAAATGGGTTGGAAAAATAATCCGGAAAAAATGTGAGATAGGGGATGTATATAACCCACGTGCGCTCGGAGGTTGAATCCATATATGTTCCATTTGCGCTCAATTATCTCGGCTCCTATCAAAGATATTAAAAATTTGGCACCTGATAAAATATTGGATATGTTATGATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTATCTTCTCACCATGACA</pcr_primer_p1>
		<pcr_primer_p2>CTTCTTTGAACCTTCTTTTAATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTGTATCTTCTCACCATGACAACTATATTTATTTTTTCATGCTTCAGAGTGTCTCTTCTGCCAGTGTCTTCGTCTTCTTCAAAATCTTTAAAAATAGATTCCCATCTATTTTTCTTCATCTCCTTCACACCGTTTGCCCTCACGAAGCTGCAGGAGGAGACGAAGAATAATTGGAATAAGGAAAAGAAGAAGCAGAAGACGTTGGATTTCTTTTCGGACGTCTTCATTAAAAGAAGGTTCAAAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTGTATCTTCTCACCATGACAACTATATTTATTTTTTCATGCTTCAGAGTGTCTCTTCTGCCAGTGTCTTCGTCTTYTTCAAAATCTTTAAAAATAGATTCCCATCTATTTTTCTTCATCTCCTTCACACCGTTTGCCCTCACGAAGCTGCAGGAGGAGACGAAGAATAATTGGAATAAGGAAAAGAAGAAGCAGAAGACGTTGGATTTCTTTTCGGACGTCTTCATTAAAAGAAGGTTCAAAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26018</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>60469</contig_pos>
        <strand></strand>
        <context>CTCACGAAGC[T/A]GCaggaggag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTCCCATCTATTTTTCTTCATCTCCTTCACACCGTTTGCCCTCACGAAGC</left_flank>
        <right_flank>GCAGGAGGAGACGAAGAATAATTGGAATAAGGAAAAGAAGAAGCAGAAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATATCACTGATAGAAAAAAAGGATACGGATGGCTGATTGTGTCTTCTCAAGTGAAAAGGAAAAGTGAAAAGTTCATCGGCTAGGTGGAACGCGTTCAGACACGACAGAGATATGATAAGCCTTCAAGGTTGTCTCTATATTTTCTTTTCATAAAAATAGAATACTATTTCAAAATCAGTTCAACGTACCTACAGTATCCCTTTCAAAGACCAAAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCACCCAATTGCACTTTAATCTATCAATTTGTTTTTTGATGATTCATTGGAACAATCAACTATCATTCTTTTTATTTTTTTTCGTTTGTATCTTCTCACCATGACAACTATATTTATTTTTTCATGCTTCAGAGTGTCTCTTCTGCCAGTGTCTTCGTCTTCTTCAAAATCTTTAAAAATAGATTCCCATCTATTTTTCTTCATCTCCTTCACACCGTTTGCCCTCACGAAGCTGCAGGAGGAGACGAAGAATAATTGGAATAAGGAAAAGAAGAAGCAGAAGACGTTGGATTTCTTTTCGGACGTCTTCATTAAAAGAAGGTTCAAAGAAGACGTCATCGTTCCGAGGATACAACCACAACCACACCGTCAACACATCTGAAAGAAAATAGAGGAAAAGATAGAAGCAGAGAGTTGCGGGTGAGTCTTGTCTAGTCTATGTAGCTGAAAAGTCATGACGACATCCGTTTCGGATATAGCAAAGTTAATTGGAAATGGGTTGGAAAAATAATCCGGAAAAAATGTGAGATAGGGGATGTATATAACCCACGTGCGCTCGGAGGTTGAATCCATATATGTTCCATTTGCGCTCAATTATCTCGGCTCCTATCAAAGATATTAAAAATTTGGCACCTGATAAAATATTGGATATGTTATGATACATATTTTGTTAGTTGACAACTTTTTGATATCATTCACGAAAAATGAGATATAAGGGTTCAAAGTTGGCGGTT</canonical>
            <polymorphic>AATATCACTGATAGAAAAAAAGGATACGGATGGCTGATTGTGTCTTCTCAAGTGAAAAGGAAAAGTGAAAAGTTCATCGGCTAGGTGGAACGCGTTCAGACACGACAGAGATATGATAAGCCTTCAAGGTTGTCTCTATATTTTCTTTTCATAAAAATAGAATACTATTTCAAAATCAGTTCAACGTACCTACAGTATCCCTTTCAAAGACCAAAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCACCCAATTGCACTTTAATCTATCAATTTGTTTTTTGATGATTCATTGGAACAATCAACTATCATTCTTTTTATTTTTTTTCGTTTGTATCTTCTCACCATGACAACTATATTTATTTTTTCATGCTTCAGAGTGTCTCTTCTGCCAGTGTCTTCGTCTTCTTCAAAATCTTTAAAAATAGATTCCCATCTATTTTTCTTCATCTCCTTCACACCGTTTGCCCTCACGAAGCWGCAGGAGGAGACGAAGAATAATTGGAATAAGGAAAAGAAGAAGCAGAAGACGTTGGATTTCTTTTCGGACGTCTTCATTAAAAGAAGGTTCAAAGAAGACGTCATCGTTCCGAGGATACAACCACAACCACACCGTCAACACATCTGAAAGAAAATAGAGGAAAAGATAGAAGCAGAGAGTTGCGGGTGAGTCTTGTCTAGTCTATGTAGCTGAAAAGTCATGACGACATCCGTTTCGGATATAGCAAAGTTAATTGGAAATGGGTTGGAAAAATAATCCGGAAAAAATGTGAGATAGGGGATGTATATAACCCACGTGCGCTCGGAGGTTGAATCCATATATGTTCCATTTGCGCTCAATTATCTCGGCTCCTATCAAAGATATTAAAAATTTGGCACCTGATAAAATATTGGATATGTTATGATACATATTTTGTTAGTTGACAACTTTTTGATATCATTCACGAAAAATGAGATATAAGGGTTCAAAGTTGGCGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>290 282 216 212</canonical_bands>
                <polymorphic_bands>494 290 216</polymorphic_bands>
            </assay>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 309 190</canonical_bands>
                <polymorphic_bands>810 190</polymorphic_bands>
            </assay>
            <assay>
                <site>CTGCAG</site>
                <isoschizomers>
                    <enzyme>BloHII</enzyme>
                    <enzyme>BstMAI</enzyme>
                    <enzyme>PstI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>282 212 159 131 96 47 40 33</canonical_bands>
                <polymorphic_bands>494 159 131 96 47 40 33</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>499 277 224</canonical_bands>
                <polymorphic_bands>723 277</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGTATCTTCTCACCATGACA</pcr_primer_p1>
		<pcr_primer_p2>CTTCTTTGAACCTTCTTTTAATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTGTATCTTCTCACCATGACAACTATATTTATTTTTTCATGCTTCAGAGTGTCTCTTCTGCCAGTGTCTTCGTCTTCTTCAAAATCTTTAAAAATAGATTCCCATCTATTTTTCTTCATCTCCTTCACACCGTTTGCCCTCACGAAGCTGCAGGAGGAGACGAAGAATAATTGGAATAAGGAAAAGAAGAAGCAGAAGACGTTGGATTTCTTTTCGGACGTCTTCATTAAAAGAAGGTTCAAAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTGTATCTTCTCACCATGACAACTATATTTATTTTTTCATGCTTCAGAGTGTCTCTTCTGCCAGTGTCTTCGTCTTCTTCAAAATCTTTAAAAATAGATTCCCATCTATTTTTCTTCATCTCCTTCACACCGTTTGCCCTCACGAAGCWGCAGGAGGAGACGAAGAATAATTGGAATAAGGAAAAGAAGAAGCAGAAGACGTTGGATTTCTTTTCGGACGTCTTCATTAAAAGAAGGTTCAAAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26019</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>89226</contig_pos>
        <strand></strand>
        <context>CACTTaccgt[A/G]atacctgtaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATGTTTTGCTTAACATTAAACAAACTTGTTAGTTTTTCCACTTACCGT</left_flank>
        <right_flank>ATACCTGTAATAAATGGGCCCCCTAACTTTCAACTTGGAGCCAGTTTATC</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAGTGCGCGGGGGGCACCAGGGGAATCTCGTTTTGGCAAAAATCGAAGAGAGGGAAAAATTGAATAGGAGAGAAGATAAATGTTTTGTGTCCTCTGGATGTTTCTATCTCTCTTGGATACGCATTTATGAGTGACACGACAATTTTTGAAAGGTTCCTGATATCTCCCGCTAGGCTTCTTATCTTTTATCAACATGTTCTTTTTTCGGGCGGAACAGTGGTCTGCTGATTTGTTGATATTTCGGTGGAGCTTTTTGATTGAGCATTCAGTTTTTTGATTTGTTCTGAGAAATTGATAATTTTTAGAGTAAAAATCATTTCTTTTCAGCTTTACTGAAAGTTTTCCAACTTTTGATCCAAAAAGCGCACCCTTTTTCACATTTATTTGTTTTTACAGTTTATTTTTTCCAATCTAAAAATACTGTATTTTGAAAAATTGAGAAATTTTAATGTTTTGCTTAACATTAAACAAACTTGTTAGTTTTTCCACTTACCGTAATACCTGTAATAAATGGGCCCCCTAACTTTCAACTTGGAGCCAGTTTATCTTGGTTACTGTAAGAGATATCAAAAATATGTCAACTGATAAATTCTTTATCATAATATCAAAAAATTTTTGTCAGTCGACACATTTTTGTTATCTTTCACAGAAATTAAGATAATTTAGCTTAAAATGCAAGTATGTAGGATGGCGCATAACCGTAAACGCTCTAATAAAAAACCTAAACTGTCATCTTTGAGCACCTAATTTATCTCAAACTGAATAGTGGGAGGCCCTTATATCAAGTTTTACTGTACTTCAGCAAGTTTTAAGTTTCCCTAACACCCTAAATTTCTTTAAATTGAGCATTTTTGAATTTTTGAATAGCTCAAAATTCAAAAAACACCTCGCATTTAAAATAAAACTGCTTTCTAGATTCCATCCGATGGTGACACCAGGCAATCGCACATGCTGTCTCACAATCAGAATTCAGGTAACTATTAGACATTTTTGTTCC</canonical>
            <polymorphic>AAGAAGTGCGCGGGGGGCACCAGGGGAATCTCGTTTTGGCAAAAATCGAAGAGAGGGAAAAATTGAATAGGAGAGAAGATAAATGTTTTGTGTCCTCTGGATGTTTCTATCTCTCTTGGATACGCATTTATGAGTGACACGACAATTTTTGAAAGGTTCCTGATATCTCCCGCTAGGCTTCTTATCTTTTATCAACATGTTCTTTTTTCGGGCGGAACAGTGGTCTGCTGATTTGTTGATATTTCGGTGGAGCTTTTTGATTGAGCATTCAGTTTTTTGATTTGTTCTGAGAAATTGATAATTTTTAGAGTAAAAATCATTTCTTTTCAGCTTTACTGAAAGTTTTCCAACTTTTGATCCAAAAAGCGCACCCTTTTTCACATTTATTTGTTTTTACAGTTTATTTTTTCCAATCTAAAAATACTGTATTTTGAAAAATTGAGAAATTTTAATGTTTTGCTTAACATTAAACAAACTTGTTAGTTTTTCCACTTACCGTRATACCTGTAATAAATGGGCCCCCTAACTTTCAACTTGGAGCCAGTTTATCTTGGTTACTGTAAGAGATATCAAAAATATGTCAACTGATAAATTCTTTATCATAATATCAAAAAATTTTTGTCAGTCGACACATTTTTGTTATCTTTCACAGAAATTAAGATAATTTAGCTTAAAATGCAAGTATGTAGGATGGCGCATAACCGTAAACGCTCTAATAAAAAACCTAAACTGTCATCTTTGAGCACCTAATTTATCTCAAACTGAATAGTGGGAGGCCCTTATATCAAGTTTTACTGTACTTCAGCAAGTTTTAAGTTTCCCTAACACCCTAAATTTCTTTAAATTGAGCATTTTTGAATTTTTGAATAGCTCAAAATTCAAAAAACACCTCGCATTTAAAATAAAACTGCTTTCTAGATTCCATCCGATGGTGACACCAGGCAATCGCACATGCTGTCTCACAATCAGAATTCAGGTAACTATTAGACATTTTTGTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGAAATTTTAATGTTTTGCTTA</pcr_primer_p1>
		<pcr_primer_p2>TATGCGCCATCCTACATACT</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>TGAGAAATTTTAATGTTTTGCTTAACATTAAACAAACTTGTTAGTTTTTCCACTTACCGTAATACCTGTAATAAATGGGCCCCCTAACTTTCAACTTGGAGCCAGTTTATCTTGGTTACTGTAAGAGATATCAAAAATATGTCAACTGATAAATTCTTTATCATAATATCAAAAAATTTTTGTCAGTCGACACATTTTTGTTATCTTTCACAGAAATTAAGATAATTTAGCTTAAAATGCAAGTATGTAGGATGGCGCATA</canonical_amplicon>
		<polymorphic_amplicon>TGAGAAATTTTAATGTTTTGCTTAACATTAAACAAACTTGTTAGTTTTTCCACTTACCGTRATACCTGTAATAAATGGGCCCCCTAACTTTCAACTTGGAGCCAGTTTATCTTGGTTACTGTAAGAGATATCAAAAATATGTCAACTGATAAATTCTTTATCATAATATCAAAAAATTTTTGTCAGTCGACACATTTTTGTTATCTTTCACAGAAATTAAGATAATTTAGCTTAAAATGCAAGTATGTAGGATGGCGCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26020</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>89341</contig_pos>
        <strand></strand>
        <context>atatcaaaaa[A/T]tktttgtcag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGATATCAAAAATATGTCAACTGATAAATTCTTTATCATAATATCAAAAA</left_flank>
        <right_flank>TTTTTGTCAGTCGACACATTTTTGTTATCTTTCACAGAAATTAAGATAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGATACGCATTTATGAGTGACACGACAATTTTTGAAAGGTTCCTGATATCTCCCGCTAGGCTTCTTATCTTTTATCAACATGTTCTTTTTTCGGGCGGAACAGTGGTCTGCTGATTTGTTGATATTTCGGTGGAGCTTTTTGATTGAGCATTCAGTTTTTTGATTTGTTCTGAGAAATTGATAATTTTTAGAGTAAAAATCATTTCTTTTCAGCTTTACTGAAAGTTTTCCAACTTTTGATCCAAAAAGCGCACCCTTTTTCACATTTATTTGTTTTTACAGTTTATTTTTTCCAATCTAAAAATACTGTATTTTGAAAAATTGAGAAATTTTAATGTTTTGCTTAACATTAAACAAACTTGTTAGTTTTTCCACTTACCGTAATACCTGTAATAAATGGGCCCCCTAACTTTCAACTTGGAGCCAGTTTATCTTGGTTACTGTAAGAGATATCAAAAATATGTCAACTGATAAATTCTTTATCATAATATCAAAAAATTTTTGTCAGTCGACACATTTTTGTTATCTTTCACAGAAATTAAGATAATTTAGCTTAAAATGCAAGTATGTAGGATGGCGCATAACCGTAAACGCTCTAATAAAAAACCTAAACTGTCATCTTTGAGCACCTAATTTATCTCAAACTGAATAGTGGGAGGCCCTTATATCAAGTTTTACTGTACTTCAGCAAGTTTTAAGTTTCCCTAACACCCTAAATTTCTTTAAATTGAGCATTTTTGAATTTTTGAATAGCTCAAAATTCAAAAAACACCTCGCATTTAAAATAAAACTGCTTTCTAGATTCCATCCGATGGTGACACCAGGCAATCGCACATGCTGTCTCACAATCAGAATTCAGGTAACTATTAGACATTTTTGTTCCTAAAACCTGTAAATTAACTATATTGGTCCCAAAACGAAAACTACCGTATCCTAAAGAAAATTTCATTTTCCGGATTCATTTTCTCGAGTTCCACACATTTTCAGTCAATTTTTTG</canonical>
            <polymorphic>TTGGATACGCATTTATGAGTGACACGACAATTTTTGAAAGGTTCCTGATATCTCCCGCTAGGCTTCTTATCTTTTATCAACATGTTCTTTTTTCGGGCGGAACAGTGGTCTGCTGATTTGTTGATATTTCGGTGGAGCTTTTTGATTGAGCATTCAGTTTTTTGATTTGTTCTGAGAAATTGATAATTTTTAGAGTAAAAATCATTTCTTTTCAGCTTTACTGAAAGTTTTCCAACTTTTGATCCAAAAAGCGCACCCTTTTTCACATTTATTTGTTTTTACAGTTTATTTTTTCCAATCTAAAAATACTGTATTTTGAAAAATTGAGAAATTTTAATGTTTTGCTTAACATTAAACAAACTTGTTAGTTTTTCCACTTACCGTAATACCTGTAATAAATGGGCCCCCTAACTTTCAACTTGGAGCCAGTTTATCTTGGTTACTGTAAGAGATATCAAAAATATGTCAACTGATAAATTCTTTATCATAATATCAAAAAWTTTTTGTCAGTCGACACATTTTTGTTATCTTTCACAGAAATTAAGATAATTTAGCTTAAAATGCAAGTATGTAGGATGGCGCATAACCGTAAACGCTCTAATAAAAAACCTAAACTGTCATCTTTGAGCACCTAATTTATCTCAAACTGAATAGTGGGAGGCCCTTATATCAAGTTTTACTGTACTTCAGCAAGTTTTAAGTTTCCCTAACACCCTAAATTTCTTTAAATTGAGCATTTTTGAATTTTTGAATAGCTCAAAATTCAAAAAACACCTCGCATTTAAAATAAAACTGCTTTCTAGATTCCATCCGATGGTGACACCAGGCAATCGCACATGCTGTCTCACAATCAGAATTCAGGTAACTATTAGACATTTTTGTTCCTAAAACCTGTAAATTAACTATATTGGTCCCAAAACGAAAACTACCGTATCCTAAAGAAAATTTCATTTTCCGGATTCATTTTCTCGAGTTCCACACATTTTCAGTCAATTTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>329 219 146 94 89 57 25 23 18</canonical_bands>
                <polymorphic_bands>329 242 146 94 89 57 25 18</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>149 146 137 94 86 84 48 47 42 40 28 23 18 15 10 9 9 8 7</canonical_bands>
                <polymorphic_bands>149 146 137 94 86 84 63 48 47 42 28 18 15 10 9 9 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAAACTTGTTAGTTTTTCCAC</pcr_primer_p1>
		<pcr_primer_p2>TTATTAGAGCGTTTACGGTTATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACAAACTTGTTAGTTTTTCCACTTACCGTAATACCTGTAATAAATGGGCCCCCTAACTTTCAACTTGGAGCCAGTTTATCTTGGTTACTGTAAGAGATATCAAAAATATGTCAACTGATAAATTCTTTATCATAATATCAAAAAATTTTTGTCAGTCGACACATTTTTGTTATCTTTCACAGAAATTAAGATAATTTAGCTTAAAATGCAAGTATGTAGGATGGCGCATAACCGTAAACGCTCTAATAA</canonical_amplicon>
		<polymorphic_amplicon>AACAAACTTGTTAGTTTTTCCACTTACCGTAATACCTGTAATAAATGGGCCCCCTAACTTTCAACTTGGAGCCAGTTTATCTTGGTTACTGTAAGAGATATCAAAAATATGTCAACTGATAAATTCTTTATCATAATATCAAAAAWTTTTTGTCAGTCGACACATTTTTGTTATCTTTCACAGAAATTAAGATAATTTAGCTTAAAATGCAAGTATGTAGGATGGCGCATAACCGTAAACGCTCTAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26021</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>89343</contig_pos>
        <strand></strand>
        <context>atcaaaaawt[T/G]tttgtcagtc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATATCAAAAATATGTCAACTGATAAATTCTTTATCATAATATCAAAAAAT</left_flank>
        <right_flank>TTTGTCAGTCGACACATTTTTGTTATCTTTCACAGAAATTAAGATAATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATACGCATTTATGAGTGACACGACAATTTTTGAAAGGTTCCTGATATCTCCCGCTAGGCTTCTTATCTTTTATCAACATGTTCTTTTTTCGGGCGGAACAGTGGTCTGCTGATTTGTTGATATTTCGGTGGAGCTTTTTGATTGAGCATTCAGTTTTTTGATTTGTTCTGAGAAATTGATAATTTTTAGAGTAAAAATCATTTCTTTTCAGCTTTACTGAAAGTTTTCCAACTTTTGATCCAAAAAGCGCACCCTTTTTCACATTTATTTGTTTTTACAGTTTATTTTTTCCAATCTAAAAATACTGTATTTTGAAAAATTGAGAAATTTTAATGTTTTGCTTAACATTAAACAAACTTGTTAGTTTTTCCACTTACCGTAATACCTGTAATAAATGGGCCCCCTAACTTTCAACTTGGAGCCAGTTTATCTTGGTTACTGTAAGAGATATCAAAAATATGTCAACTGATAAATTCTTTATCATAATATCAAAAAATTTTTGTCAGTCGACACATTTTTGTTATCTTTCACAGAAATTAAGATAATTTAGCTTAAAATGCAAGTATGTAGGATGGCGCATAACCGTAAACGCTCTAATAAAAAACCTAAACTGTCATCTTTGAGCACCTAATTTATCTCAAACTGAATAGTGGGAGGCCCTTATATCAAGTTTTACTGTACTTCAGCAAGTTTTAAGTTTCCCTAACACCCTAAATTTCTTTAAATTGAGCATTTTTGAATTTTTGAATAGCTCAAAATTCAAAAAACACCTCGCATTTAAAATAAAACTGCTTTCTAGATTCCATCCGATGGTGACACCAGGCAATCGCACATGCTGTCTCACAATCAGAATTCAGGTAACTATTAGACATTTTTGTTCCTAAAACCTGTAAATTAACTATATTGGTCCCAAAACGAAAACTACCGTATCCTAAAGAAAATTTCATTTTCCGGATTCATTTTCTCGAGTTCCACACATTTTCAGTCAATTTTTTGCA</canonical>
            <polymorphic>GGATACGCATTTATGAGTGACACGACAATTTTTGAAAGGTTCCTGATATCTCCCGCTAGGCTTCTTATCTTTTATCAACATGTTCTTTTTTCGGGCGGAACAGTGGTCTGCTGATTTGTTGATATTTCGGTGGAGCTTTTTGATTGAGCATTCAGTTTTTTGATTTGTTCTGAGAAATTGATAATTTTTAGAGTAAAAATCATTTCTTTTCAGCTTTACTGAAAGTTTTCCAACTTTTGATCCAAAAAGCGCACCCTTTTTCACATTTATTTGTTTTTACAGTTTATTTTTTCCAATCTAAAAATACTGTATTTTGAAAAATTGAGAAATTTTAATGTTTTGCTTAACATTAAACAAACTTGTTAGTTTTTCCACTTACCGTAATACCTGTAATAAATGGGCCCCCTAACTTTCAACTTGGAGCCAGTTTATCTTGGTTACTGTAAGAGATATCAAAAATATGTCAACTGATAAATTCTTTATCATAATATCAAAAAATKTTTGTCAGTCGACACATTTTTGTTATCTTTCACAGAAATTAAGATAATTTAGCTTAAAATGCAAGTATGTAGGATGGCGCATAACCGTAAACGCTCTAATAAAAAACCTAAACTGTCATCTTTGAGCACCTAATTTATCTCAAACTGAATAGTGGGAGGCCCTTATATCAAGTTTTACTGTACTTCAGCAAGTTTTAAGTTTCCCTAACACCCTAAATTTCTTTAAATTGAGCATTTTTGAATTTTTGAATAGCTCAAAATTCAAAAAACACCTCGCATTTAAAATAAAACTGCTTTCTAGATTCCATCCGATGGTGACACCAGGCAATCGCACATGCTGTCTCACAATCAGAATTCAGGTAACTATTAGACATTTTTGTTCCTAAAACCTGTAAATTAACTATATTGGTCCCAAAACGAAAACTACCGTATCCTAAAGAAAATTTCATTTTCCGGATTCATTTTCTCGAGTTCCACACATTTTCAGTCAATTTTTTGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>327 219 146 94 89 59 25 23 18</canonical_bands>
                <polymorphic_bands>327 242 146 94 89 59 25 18</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>149 146 137 94 86 84 48 47 42 40 26 23 18 15 11 10 9 8 7</canonical_bands>
                <polymorphic_bands>149 146 137 94 86 84 63 48 47 42 26 18 15 11 10 9 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAAACTTGTTAGTTTTTCCAC</pcr_primer_p1>
		<pcr_primer_p2>TTATTAGAGCGTTTACGGTTATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACAAACTTGTTAGTTTTTCCACTTACCGTAATACCTGTAATAAATGGGCCCCCTAACTTTCAACTTGGAGCCAGTTTATCTTGGTTACTGTAAGAGATATCAAAAATATGTCAACTGATAAATTCTTTATCATAATATCAAAAAATTTTTGTCAGTCGACACATTTTTGTTATCTTTCACAGAAATTAAGATAATTTAGCTTAAAATGCAAGTATGTAGGATGGCGCATAACCGTAAACGCTCTAATAA</canonical_amplicon>
		<polymorphic_amplicon>AACAAACTTGTTAGTTTTTCCACTTACCGTAATACCTGTAATAAATGGGCCCCCTAACTTTCAACTTGGAGCCAGTTTATCTTGGTTACTGTAAGAGATATCAAAAATATGTCAACTGATAAATTCTTTATCATAATATCAAAAAATKTTTGTCAGTCGACACATTTTTGTTATCTTTCACAGAAATTAAGATAATTTAGCTTAAAATGCAAGTATGTAGGATGGCGCATAACCGTAAACGCTCTAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26022</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>89384</contig_pos>
        <strand></strand>
        <context>cacagaaatt[A/G]agataattta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAAAAAATTTTTGTCAGTCGACACATTTTTGTTATCTTTCACAGAAATT</left_flank>
        <right_flank>AGATAATTTAGCTTAAAATGCAAGTATGTAGGATGGCGCATAACCGTAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTGATATCTCCCGCTAGGCTTCTTATCTTTTATCAACATGTTCTTTTTTCGGGCGGAACAGTGGTCTGCTGATTTGTTGATATTTCGGTGGAGCTTTTTGATTGAGCATTCAGTTTTTTGATTTGTTCTGAGAAATTGATAATTTTTAGAGTAAAAATCATTTCTTTTCAGCTTTACTGAAAGTTTTCCAACTTTTGATCCAAAAAGCGCACCCTTTTTCACATTTATTTGTTTTTACAGTTTATTTTTTCCAATCTAAAAATACTGTATTTTGAAAAATTGAGAAATTTTAATGTTTTGCTTAACATTAAACAAACTTGTTAGTTTTTCCACTTACCGTAATACCTGTAATAAATGGGCCCCCTAACTTTCAACTTGGAGCCAGTTTATCTTGGTTACTGTAAGAGATATCAAAAATATGTCAACTGATAAATTCTTTATCATAATATCAAAAAATTTTTGTCAGTCGACACATTTTTGTTATCTTTCACAGAAATTAAGATAATTTAGCTTAAAATGCAAGTATGTAGGATGGCGCATAACCGTAAACGCTCTAATAAAAAACCTAAACTGTCATCTTTGAGCACCTAATTTATCTCAAACTGAATAGTGGGAGGCCCTTATATCAAGTTTTACTGTACTTCAGCAAGTTTTAAGTTTCCCTAACACCCTAAATTTCTTTAAATTGAGCATTTTTGAATTTTTGAATAGCTCAAAATTCAAAAAACACCTCGCATTTAAAATAAAACTGCTTTCTAGATTCCATCCGATGGTGACACCAGGCAATCGCACATGCTGTCTCACAATCAGAATTCAGGTAACTATTAGACATTTTTGTTCCTAAAACCTGTAAATTAACTATATTGGTCCCAAAACGAAAACTACCGTATCCTAAAGAAAATTTCATTTTCCGGATTCATTTTCTCGAGTTCCACACATTTTCAGTCAATTTTTTGCAATCAAAATATTTAACTTTCCGACTTTTTTGGGATTAAAAAA</canonical>
            <polymorphic>CCTGATATCTCCCGCTAGGCTTCTTATCTTTTATCAACATGTTCTTTTTTCGGGCGGAACAGTGGTCTGCTGATTTGTTGATATTTCGGTGGAGCTTTTTGATTGAGCATTCAGTTTTTTGATTTGTTCTGAGAAATTGATAATTTTTAGAGTAAAAATCATTTCTTTTCAGCTTTACTGAAAGTTTTCCAACTTTTGATCCAAAAAGCGCACCCTTTTTCACATTTATTTGTTTTTACAGTTTATTTTTTCCAATCTAAAAATACTGTATTTTGAAAAATTGAGAAATTTTAATGTTTTGCTTAACATTAAACAAACTTGTTAGTTTTTCCACTTACCGTAATACCTGTAATAAATGGGCCCCCTAACTTTCAACTTGGAGCCAGTTTATCTTGGTTACTGTAAGAGATATCAAAAATATGTCAACTGATAAATTCTTTATCATAATATCAAAAAATTTTTGTCAGTCGACACATTTTTGTTATCTTTCACAGAAATTRAGATAATTTAGCTTAAAATGCAAGTATGTAGGATGGCGCATAACCGTAAACGCTCTAATAAAAAACCTAAACTGTCATCTTTGAGCACCTAATTTATCTCAAACTGAATAGTGGGAGGCCCTTATATCAAGTTTTACTGTACTTCAGCAAGTTTTAAGTTTCCCTAACACCCTAAATTTCTTTAAATTGAGCATTTTTGAATTTTTGAATAGCTCAAAATTCAAAAAACACCTCGCATTTAAAATAAAACTGCTTTCTAGATTCCATCCGATGGTGACACCAGGCAATCGCACATGCTGTCTCACAATCAGAATTCAGGTAACTATTAGACATTTTTGTTCCTAAAACCTGTAAATTAACTATATTGGTCCCAAAACGAAAACTACCGTATCCTAAAGAAAATTTCATTTTCCGGATTCATTTTCTCGAGTTCCACACATTTTCAGTCAATTTTTTGCAATCAAAATATTTAACTTTCCGACTTTTTTGGGATTAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>291 189 141 117 114 57 28 23 15 12 7 6</canonical_bands>
                <polymorphic_bands>291 204 141 117 114 57 28 23 12 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAAACTTGTTAGTTTTTCCAC</pcr_primer_p1>
		<pcr_primer_p2>TTATTAGAGCGTTTACGGTTATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACAAACTTGTTAGTTTTTCCACTTACCGTAATACCTGTAATAAATGGGCCCCCTAACTTTCAACTTGGAGCCAGTTTATCTTGGTTACTGTAAGAGATATCAAAAATATGTCAACTGATAAATTCTTTATCATAATATCAAAAAATTTTTGTCAGTCGACACATTTTTGTTATCTTTCACAGAAATTAAGATAATTTAGCTTAAAATGCAAGTATGTAGGATGGCGCATAACCGTAAACGCTCTAATAA</canonical_amplicon>
		<polymorphic_amplicon>AACAAACTTGTTAGTTTTTCCACTTACCGTAATACCTGTAATAAATGGGCCCCCTAACTTTCAACTTGGAGCCAGTTTATCTTGGTTACTGTAAGAGATATCAAAAATATGTCAACTGATAAATTCTTTATCATAATATCAAAAAATTTTTGTCAGTCGACACATTTTTGTTATCTTTCACAGAAATTRAGATAATTTAGCTTAAAATGCAAGTATGTAGGATGGCGCATAACCGTAAACGCTCTAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26023</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>89585</contig_pos>
        <strand></strand>
        <context>GCATTTTTGA[A/T]TTTTTGAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTTTAAGTTTCCCTAACACCCTAAATTTCTTTAAATTGAGCATTTTTGA</left_flank>
        <right_flank>TTTTTGAATAGCTCAAAATTCAAAAAACACCTCGCATTTAAAATAAAACT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAAAGCGCACCCTTTTTCACATTTATTTGTTTTTACAGTTTATTTTTTCCAATCTAAAAATACTGTATTTTGAAAAATTGAGAAATTTTAATGTTTTGCTTAACATTAAACAAACTTGTTAGTTTTTCCACTTACCGTAATACCTGTAATAAATGGGCCCCCTAACTTTCAACTTGGAGCCAGTTTATCTTGGTTACTGTAAGAGATATCAAAAATATGTCAACTGATAAATTCTTTATCATAATATCAAAAAATTTTTGTCAGTCGACACATTTTTGTTATCTTTCACAGAAATTAAGATAATTTAGCTTAAAATGCAAGTATGTAGGATGGCGCATAACCGTAAACGCTCTAATAAAAAACCTAAACTGTCATCTTTGAGCACCTAATTTATCTCAAACTGAATAGTGGGAGGCCCTTATATCAAGTTTTACTGTACTTCAGCAAGTTTTAAGTTTCCCTAACACCCTAAATTTCTTTAAATTGAGCATTTTTGAATTTTTGAATAGCTCAAAATTCAAAAAACACCTCGCATTTAAAATAAAACTGCTTTCTAGATTCCATCCGATGGTGACACCAGGCAATCGCACATGCTGTCTCACAATCAGAATTCAGGTAACTATTAGACATTTTTGTTCCTAAAACCTGTAAATTAACTATATTGGTCCCAAAACGAAAACTACCGTATCCTAAAGAAAATTTCATTTTCCGGATTCATTTTCTCGAGTTCCACACATTTTCAGTCAATTTTTTGCAATCAAAATATTTAACTTTCCGACTTTTTTGGGATTAAAAAAAATACTGAAAATAACAAATATTTTTAGGTTACGGTAGTTGTCCCTGTGGGACCTTTGGCCACGGCCATTGCTCCGATTTTGTACTAGTGTAATACTTAACCTTCATTTGCAAATTCGTCTAATCGTATGCTATCCAATTCAAATCCTAAAAAACGCTTTTAAAAGTTGCAAACTTCTATTTACATTTTGAGTCACCGTGTC</canonical>
            <polymorphic>CAAAAAGCGCACCCTTTTTCACATTTATTTGTTTTTACAGTTTATTTTTTCCAATCTAAAAATACTGTATTTTGAAAAATTGAGAAATTTTAATGTTTTGCTTAACATTAAACAAACTTGTTAGTTTTTCCACTTACCGTAATACCTGTAATAAATGGGCCCCCTAACTTTCAACTTGGAGCCAGTTTATCTTGGTTACTGTAAGAGATATCAAAAATATGTCAACTGATAAATTCTTTATCATAATATCAAAAAATTTTTGTCAGTCGACACATTTTTGTTATCTTTCACAGAAATTAAGATAATTTAGCTTAAAATGCAAGTATGTAGGATGGCGCATAACCGTAAACGCTCTAATAAAAAACCTAAACTGTCATCTTTGAGCACCTAATTTATCTCAAACTGAATAGTGGGAGGCCCTTATATCAAGTTTTACTGTACTTCAGCAAGTTTTAAGTTTCCCTAACACCCTAAATTTCTTTAAATTGAGCATTTTTGAWTTTTTGAATAGCTCAAAATTCAAAAAACACCTCGCATTTAAAATAAAACTGCTTTCTAGATTCCATCCGATGGTGACACCAGGCAATCGCACATGCTGTCTCACAATCAGAATTCAGGTAACTATTAGACATTTTTGTTCCTAAAACCTGTAAATTAACTATATTGGTCCCAAAACGAAAACTACCGTATCCTAAAGAAAATTTCATTTTCCGGATTCATTTTCTCGAGTTCCACACATTTTCAGTCAATTTTTTGCAATCAAAATATTTAACTTTCCGACTTTTTTGGGATTAAAAAAAATACTGAAAATAACAAATATTTTTAGGTTACGGTAGTTGTCCCTGTGGGACCTTTGGCCACGGCCATTGCTCCGATTTTGTACTAGTGTAATACTTAACCTTCATTTGCAAATTCGTCTAATCGTATGCTATCCAATTCAAATCCTAAAAAACGCTTTTAAAAGTTGCAAACTTCTATTTACATTTTGAGTCACCGTGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>219 211 146 94 90 89 85 25 23 18</canonical_bands>
                <polymorphic_bands>219 211 146 94 90 89 85 43 23</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>163 146 94 86 84 77 66 48 47 42 40 24 23 18 15 10 9 8</canonical_bands>
                <polymorphic_bands>163 146 94 86 84 77 66 48 47 42 40 33 24 23 10 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGCCCTTATATCAAGTTTTAC</pcr_primer_p1>
		<pcr_primer_p2>TACAGGTTTTAGGAACAAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GAGGCCCTTATATCAAGTTTTACTGTACTTCAGCAAGTTTTAAGTTTCCCTAACACCCTAAATTTCTTTAAATTGAGCATTTTTGAATTTTTGAATAGCTCAAAATTCAAAAAACACCTCGCATTTAAAATAAAACTGCTTTCTAGATTCCATCCGATGGTGACACCAGGCAATCGCACATGCTGTCTCACAATCAGAATTCAGGTAACTATTAGACATTTTTGTTCCTAAAACCTGTA</canonical_amplicon>
		<polymorphic_amplicon>GAGGCCCTTATATCAAGTTTTACTGTACTTCAGCAAGTTTTAAGTTTCCCTAACACCCTAAATTTCTTTAAATTGAGCATTTTTGAWTTTTTGAATAGCTCAAAATTCAAAAAACACCTCGCATTTAAAATAAAACTGCTTTCTAGATTCCATCCGATGGTGACACCAGGCAATCGCACATGCTGTCTCACAATCAGAATTCAGGTAACTATTAGACATTTTTGTTCCTAAAACCTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26024</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>89749</contig_pos>
        <strand></strand>
        <context>ATTAACTATA[T/C]Tggtcccaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCAGGTAACTATTAGACATTTTTGTTCCTAAAACCTGTAAATTAACTATA</left_flank>
        <right_flank>TGGTCCCAAAACGAAAACTACCGTATCCTAAAGAAAATTTCATTTTCCGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACTTTCAACTTGGAGCCAGTTTATCTTGGTTACTGTAAGAGATATCAAAAATATGTCAACTGATAAATTCTTTATCATAATATCAAAAAATTTTTGTCAGTCGACACATTTTTGTTATCTTTCACAGAAATTAAGATAATTTAGCTTAAAATGCAAGTATGTAGGATGGCGCATAACCGTAAACGCTCTAATAAAAAACCTAAACTGTCATCTTTGAGCACCTAATTTATCTCAAACTGAATAGTGGGAGGCCCTTATATCAAGTTTTACTGTACTTCAGCAAGTTTTAAGTTTCCCTAACACCCTAAATTTCTTTAAATTGAGCATTTTTGAATTTTTGAATAGCTCAAAATTCAAAAAACACCTCGCATTTAAAATAAAACTGCTTTCTAGATTCCATCCGATGGTGACACCAGGCAATCGCACATGCTGTCTCACAATCAGAATTCAGGTAACTATTAGACATTTTTGTTCCTAAAACCTGTAAATTAACTATATTGGTCCCAAAACGAAAACTACCGTATCCTAAAGAAAATTTCATTTTCCGGATTCATTTTCTCGAGTTCCACACATTTTCAGTCAATTTTTTGCAATCAAAATATTTAACTTTCCGACTTTTTTGGGATTAAAAAAAATACTGAAAATAACAAATATTTTTAGGTTACGGTAGTTGTCCCTGTGGGACCTTTGGCCACGGCCATTGCTCCGATTTTGTACTAGTGTAATACTTAACCTTCATTTGCAAATTCGTCTAATCGTATGCTATCCAATTCAAATCCTAAAAAACGCTTTTAAAAGTTGCAAACTTCTATTTACATTTTGAGTCACCGTGTCTTCCTCAAATGGCATCATCATCATTTTCTGCCATTATAAAAGACATGGTCTACTGACCATACAGATGTTTCGTTGGCTTCTTGCTTCCTCGAAACATTGCAAAAATAGTTTTCAATCCGAAGAGGTTTAGACATACAAAATGAAGATGGACAGAAAACTTGAAA</canonical>
            <polymorphic>TAACTTTCAACTTGGAGCCAGTTTATCTTGGTTACTGTAAGAGATATCAAAAATATGTCAACTGATAAATTCTTTATCATAATATCAAAAAATTTTTGTCAGTCGACACATTTTTGTTATCTTTCACAGAAATTAAGATAATTTAGCTTAAAATGCAAGTATGTAGGATGGCGCATAACCGTAAACGCTCTAATAAAAAACCTAAACTGTCATCTTTGAGCACCTAATTTATCTCAAACTGAATAGTGGGAGGCCCTTATATCAAGTTTTACTGTACTTCAGCAAGTTTTAAGTTTCCCTAACACCCTAAATTTCTTTAAATTGAGCATTTTTGAATTTTTGAATAGCTCAAAATTCAAAAAACACCTCGCATTTAAAATAAAACTGCTTTCTAGATTCCATCCGATGGTGACACCAGGCAATCGCACATGCTGTCTCACAATCAGAATTCAGGTAACTATTAGACATTTTTGTTCCTAAAACCTGTAAATTAACTATAYTGGTCCCAAAACGAAAACTACCGTATCCTAAAGAAAATTTCATTTTCCGGATTCATTTTCTCGAGTTCCACACATTTTCAGTCAATTTTTTGCAATCAAAATATTTAACTTTCCGACTTTTTTGGGATTAAAAAAAATACTGAAAATAACAAATATTTTTAGGTTACGGTAGTTGTCCCTGTGGGACCTTTGGCCACGGCCATTGCTCCGATTTTGTACTAGTGTAATACTTAACCTTCATTTGCAAATTCGTCTAATCGTATGCTATCCAATTCAAATCCTAAAAAACGCTTTTAAAAGTTGCAAACTTCTATTTACATTTTGAGTCACCGTGTCTTCCTCAAATGGCATCATCATCATTTTCTGCCATTATAAAAGACATGGTCTACTGACCATACAGATGTTTCGTTGGCTTCTTGCTTCCTCGAAACATTGCAAAAATAGTTTTCAATCCGAAGAGGTTTAGACATACAAAATGAAGATGGACAGAAAACTTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGCTGTCTCACAATCAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGCAAATGAAGGTTAAGTATT</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>ATGCTGTCTCACAATCAGAATTCAGGTAACTATTAGACATTTTTGTTCCTAAAACCTGTAAATTAACTATATTGGTCCCAAAACGAAAACTACCGTATCCTAAAGAAAATTTCATTTTCCGGATTCATTTTCTCGAGTTCCACACATTTTCAGTCAATTTTTTGCAATCAAAATATTTAACTTTCCGACTTTTTTGGGATTAAAAAAAATACTGAAAATAACAAATATTTTTAGGTTACGGTAGTTGTCCCTGTGGGACCTTTGGCCACGGCCATTGCTCCGATTTTGTACTAGTGTAATACTTAACCTTCATTTGCAAA</canonical_amplicon>
		<polymorphic_amplicon>ATGCTGTCTCACAATCAGAATTCAGGTAACTATTAGACATTTTTGTTCCTAAAACCTGTAAATTAACTATAYTGGTCCCAAAACGAAAACTACCGTATCCTAAAGAAAATTTCATTTTCCGGATTCATTTTCTCGAGTTCCACACATTTTCAGTCAATTTTTTGCAATCAAAATATTTAACTTTCCGACTTTTTTGGGATTAAAAAAAATACTGAAAATAACAAATATTTTTAGGTTACGGTAGTTGTCCCTGTGGGACCTTTGGCCACGGCCATTGCTCCGATTTTGTACTAGTGTAATACTTAACCTTCATTTGCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26025</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>89803</contig_pos>
        <strand></strand>
        <context>tttccggatt[C/T]attttctcga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCCAAAACGAAAACTACCGTATCCTAAAGAAAATTTCATTTTCCGGATT</left_flank>
        <right_flank>ATTTTCTCGAGTTCCACACATTTTCAGTCAATTTTTTGCAATCAAAATAT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTCAACTGATAAATTCTTTATCATAATATCAAAAAATTTTTGTCAGTCGACACATTTTTGTTATCTTTCACAGAAATTAAGATAATTTAGCTTAAAATGCAAGTATGTAGGATGGCGCATAACCGTAAACGCTCTAATAAAAAACCTAAACTGTCATCTTTGAGCACCTAATTTATCTCAAACTGAATAGTGGGAGGCCCTTATATCAAGTTTTACTGTACTTCAGCAAGTTTTAAGTTTCCCTAACACCCTAAATTTCTTTAAATTGAGCATTTTTGAATTTTTGAATAGCTCAAAATTCAAAAAACACCTCGCATTTAAAATAAAACTGCTTTCTAGATTCCATCCGATGGTGACACCAGGCAATCGCACATGCTGTCTCACAATCAGAATTCAGGTAACTATTAGACATTTTTGTTCCTAAAACCTGTAAATTAACTATATTGGTCCCAAAACGAAAACTACCGTATCCTAAAGAAAATTTCATTTTCCGGATTCATTTTCTCGAGTTCCACACATTTTCAGTCAATTTTTTGCAATCAAAATATTTAACTTTCCGACTTTTTTGGGATTAAAAAAAATACTGAAAATAACAAATATTTTTAGGTTACGGTAGTTGTCCCTGTGGGACCTTTGGCCACGGCCATTGCTCCGATTTTGTACTAGTGTAATACTTAACCTTCATTTGCAAATTCGTCTAATCGTATGCTATCCAATTCAAATCCTAAAAAACGCTTTTAAAAGTTGCAAACTTCTATTTACATTTTGAGTCACCGTGTCTTCCTCAAATGGCATCATCATCATTTTCTGCCATTATAAAAGACATGGTCTACTGACCATACAGATGTTTCGTTGGCTTCTTGCTTCCTCGAAACATTGCAAAAATAGTTTTCAATCCGAAGAGGTTTAGACATACAAAATGAAGATGGACAGAAAACTTGAAACATCTCTCACCTATTCGATTTACGCAATACATGCACTACAATATTTTCCGTTTA</canonical>
            <polymorphic>ATGTCAACTGATAAATTCTTTATCATAATATCAAAAAATTTTTGTCAGTCGACACATTTTTGTTATCTTTCACAGAAATTAAGATAATTTAGCTTAAAATGCAAGTATGTAGGATGGCGCATAACCGTAAACGCTCTAATAAAAAACCTAAACTGTCATCTTTGAGCACCTAATTTATCTCAAACTGAATAGTGGGAGGCCCTTATATCAAGTTTTACTGTACTTCAGCAAGTTTTAAGTTTCCCTAACACCCTAAATTTCTTTAAATTGAGCATTTTTGAATTTTTGAATAGCTCAAAATTCAAAAAACACCTCGCATTTAAAATAAAACTGCTTTCTAGATTCCATCCGATGGTGACACCAGGCAATCGCACATGCTGTCTCACAATCAGAATTCAGGTAACTATTAGACATTTTTGTTCCTAAAACCTGTAAATTAACTATATTGGTCCCAAAACGAAAACTACCGTATCCTAAAGAAAATTTCATTTTCCGGATTYATTTTCTCGAGTTCCACACATTTTCAGTCAATTTTTTGCAATCAAAATATTTAACTTTCCGACTTTTTTGGGATTAAAAAAAATACTGAAAATAACAAATATTTTTAGGTTACGGTAGTTGTCCCTGTGGGACCTTTGGCCACGGCCATTGCTCCGATTTTGTACTAGTGTAATACTTAACCTTCATTTGCAAATTCGTCTAATCGTATGCTATCCAATTCAAATCCTAAAAAACGCTTTTAAAAGTTGCAAACTTCTATTTACATTTTGAGTCACCGTGTCTTCCTCAAATGGCATCATCATCATTTTCTGCCATTATAAAAGACATGGTCTACTGACCATACAGATGTTTCGTTGGCTTCTTGCTTCCTCGAAACATTGCAAAAATAGTTTTCAATCCGAAGAGGTTTAGACATACAAAATGAAGATGGACAGAAAACTTGAAACATCTCTCACCTATTCGATTTACGCAATACATGCACTACAATATTTTCCGTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>341 274 230 155</canonical_bands>
                <polymorphic_bands>429 341 230</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>504 341 155</canonical_bands>
                <polymorphic_bands>659 341</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTTCCTAAAACCTGTAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTGCAAATGAAGGTTAAGTATT</pcr_primer_p2>
		<pcr_amplicon_size>281</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTTCCTAAAACCTGTAAATTAACTATATTGGTCCCAAAACGAAAACTACCGTATCCTAAAGAAAATTTCATTTTCCGGATTCATTTTCTCGAGTTCCACACATTTTCAGTCAATTTTTTGCAATCAAAATATTTAACTTTCCGACTTTTTTGGGATTAAAAAAAATACTGAAAATAACAAATATTTTTAGGTTACGGTAGTTGTCCCTGTGGGACCTTTGGCCACGGCCATTGCTCCGATTTTGTACTAGTGTAATACTTAACCTTCATTTGCAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTTCCTAAAACCTGTAAATTAACTATATTGGTCCCAAAACGAAAACTACCGTATCCTAAAGAAAATTTCATTTTCCGGATTYATTTTCTCGAGTTCCACACATTTTCAGTCAATTTTTTGCAATCAAAATATTTAACTTTCCGACTTTTTTGGGATTAAAAAAAATACTGAAAATAACAAATATTTTTAGGTTACGGTAGTTGTCCCTGTGGGACCTTTGGCCACGGCCATTGCTCCGATTTTGTACTAGTGTAATACTTAACCTTCATTTGCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26026</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>93100</contig_pos>
        <strand>+</strand>
        <context>ATGGGTAATG[C/T]TTTTTTTACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAGCGGCCAATAAGACCATTTCTCAGGATTTAGTCGAGAATGGGTAATG</left_flank>
        <right_flank>TTTTTTTACTGAATGTTCTATTTTGAAATCCTAAATTCCAGACTCTGTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGCTTAAGCGATCGCTTTGAATCAAACGTAAAATTATATATCTACCAATTTTCGAGGTTCCAAGACACTTATGTCCAAAGATATATTCATTTTTACCGGTCCGGGCAATTGTGCGCCACTACAGTAATTCTCTAATCCTTCAGGCGCTTGATGTTTGAACATAAGTCCAAATTGCCTAAACTTTCCCACCTTCCGCACTTTTTGGATCATCAAACAATTTTTTGCAGACAGAAAAAGGGTTTGGTGGATGCCAGACTTATTGAAGACACTTCCGCCGTTTGCAGAAGGATATCGGATAGAAAATGTAAGATTCTTTTCTCGTTCTTGCAAAAAAATTTTTTTATTTCAGTTTGTTCCAAAATACAAAATTTCGGGGTGCACTATAAACGGAAATTTCCCGGAAATGAGCACTGCCATCTTTTGTTACATTCACAATTCGACACTATTCACAGCGGCCAATAAGACCATTTCTCAGGATTTAGTCGAGAATGGGTAATGTTTTTTTTACTGAATGTTCTATTTTGAAATCCTAAATTCCAGACTCTGTTCCCAGGATAAAATGTTCTATCTGCCAGACTGGAAGCAGTGGAAGAAATACATAACAAATAAAATTCGAAGAGTTGCATTTGTCCAACATCCTCTGGAACGATTCGCACGATCTTTTATGAGGCATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGAT</canonical>
            <polymorphic>TCGCTTAAGCGATCGCTTTGAATCAAACGTAAAATTATATATCTACCAATTTTCGAGGTTCCAAGACACTTATGTCCAAAGATATATTCATTTTTACCGGTCCGGGCAATTGTGCGCCACTACAGTAATTCTCTAATCCTTCAGGCGCTTGATGTTTGAACATAAGTCCAAATTGCCTAAACTTTCCCACCTTCCGCACTTTTTGGATCATCAAACAATTTTTTGCAGACAGAAAAAGGGTTTGGTGGATGCCAGACTTATTGAAGACACTTCCGCCGTTTGCAGAAGGATATCGGATAGAAAATGTAAGATTCTTTTCTCGTTCTTGCAAAAAAATTTTTTTATTTCAGTTTGTTCCAAAATACAAAATTTCGGGGTGCACTATAAACGGAAATTTCCCGGAAATGAGCACTGCCATCTTTTGTTACATTCACAATTCGACACTATTCACAGCGGCCAATAAGACCATTTCTCAGGATTTAGTCGAGAATGGGTAATGYTTTTTTTACTGAATGTTCTATTTTGAAATCCTAAATTCCAGACTCTGTTCCCAGGATAAAATGTTCTATCTGCCAGACTGGAAGCAGTGGAAGAAATACATAACAAATAAAATTCGAAGAGTTGCATTTGTCCAACATCCTCTGGAACGATTCGCACGATCTTTTATGAGGCATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCACAATTCGACACTATTCAC</pcr_primer_p1>
		<pcr_primer_p2>TGACAATGCCTCATAAAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTCACAATTCGACACTATTCACAGCGGCCAATAAGACCATTTCTCAGGATTTAGTCGAGAATGGGTAATGTTTTTTTTACTGAATGTTCTATTTTGAAATCCTAAATTCCAGACTCTGTTCCCAGGATAAAATGTTCTATCTGCCAGACTGGAAGCAGTGGAAGAAATACATAACAAATAAAATTCGAAGAGTTGCATTTGTCCAACATCCTCTGGAACGATTCGCACGATCTTTTATGAGGCATTGTCA</canonical_amplicon>
		<polymorphic_amplicon>ATTCACAATTCGACACTATTCACAGCGGCCAATAAGACCATTTCTCAGGATTTAGTCGAGAATGGGTAATGYTTTTTTTACTGAATGTTCTATTTTGAAATCCTAAATTCCAGACTCTGTTCCCAGGATAAAATGTTCTATCTGCCAGACTGGAAGCAGTGGAAGAAATACATAACAAATAAAATTCGAAGAGTTGCATTTGTCCAACATCCTCTGGAACGATTCGCACGATCTTTTATGAGGCATTGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26027</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>93349</contig_pos>
        <strand></strand>
        <context>caatttatct[C/T]ggttcctgtt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCT</left_flank>
        <right_flank>GGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCCAGACTTATTGAAGACACTTCCGCCGTTTGCAGAAGGATATCGGATAGAAAATGTAAGATTCTTTTCTCGTTCTTGCAAAAAAATTTTTTTATTTCAGTTTGTTCCAAAATACAAAATTTCGGGGTGCACTATAAACGGAAATTTCCCGGAAATGAGCACTGCCATCTTTTGTTACATTCACAATTCGACACTATTCACAGCGGCCAATAAGACCATTTCTCAGGATTTAGTCGAGAATGGGTAATGTTTTTTTTACTGAATGTTCTATTTTGAAATCCTAAATTCCAGACTCTGTTCCCAGGATAAAATGTTCTATCTGCCAGACTGGAAGCAGTGGAAGAAATACATAACAAATAAAATTCGAAGAGTTGCATTTGTCCAACATCCTCTGGAACGATTCGCACGATCTTTTATGAGGCATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGCAACGAAAATGTTGGATGTTTCATGAGAAAATTAATAAAAGAACATGAAAAAGTGGCGCAAGGACTCGCTGGAAGAACACGAACCTATATTACCAA</canonical>
            <polymorphic>TGCCAGACTTATTGAAGACACTTCCGCCGTTTGCAGAAGGATATCGGATAGAAAATGTAAGATTCTTTTCTCGTTCTTGCAAAAAAATTTTTTTATTTCAGTTTGTTCCAAAATACAAAATTTCGGGGTGCACTATAAACGGAAATTTCCCGGAAATGAGCACTGCCATCTTTTGTTACATTCACAATTCGACACTATTCACAGCGGCCAATAAGACCATTTCTCAGGATTTAGTCGAGAATGGGTAATGTTTTTTTTACTGAATGTTCTATTTTGAAATCCTAAATTCCAGACTCTGTTCCCAGGATAAAATGTTCTATCTGCCAGACTGGAAGCAGTGGAAGAAATACATAACAAATAAAATTCGAAGAGTTGCATTTGTCCAACATCCTCTGGAACGATTCGCACGATCTTTTATGAGGCATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTYGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGCAACGAAAATGTTGGATGTTTCATGAGAAAATTAATAAAAGAACATGAAAAAGTGGCGCAAGGACTCGCTGGAAGAACACGAACCTATATTACCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGTCAACGGTAAGTATTATGC</pcr_primer_p1>
		<pcr_primer_p2>GCAATTCATACATCTCTTGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>482</pcr_amplicon_size>
		<canonical_amplicon>ATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGC</canonical_amplicon>
		<polymorphic_amplicon>ATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTYGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26028</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>93360</contig_pos>
        <strand></strand>
        <context>ggttcctgtt[G/T]gagatatgag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTT</left_flank>
        <right_flank>GAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAGACACTTCCGCCGTTTGCAGAAGGATATCGGATAGAAAATGTAAGATTCTTTTCTCGTTCTTGCAAAAAAATTTTTTTATTTCAGTTTGTTCCAAAATACAAAATTTCGGGGTGCACTATAAACGGAAATTTCCCGGAAATGAGCACTGCCATCTTTTGTTACATTCACAATTCGACACTATTCACAGCGGCCAATAAGACCATTTCTCAGGATTTAGTCGAGAATGGGTAATGTTTTTTTTACTGAATGTTCTATTTTGAAATCCTAAATTCCAGACTCTGTTCCCAGGATAAAATGTTCTATCTGCCAGACTGGAAGCAGTGGAAGAAATACATAACAAATAAAATTCGAAGAGTTGCATTTGTCCAACATCCTCTGGAACGATTCGCACGATCTTTTATGAGGCATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGCAACGAAAATGTTGGATGTTTCATGAGAAAATTAATAAAAGAACATGAAAAAGTGGCGCAAGGACTCGCTGGAAGAACACGAACCTATATTACCAACCATTTCAGCC</canonical>
            <polymorphic>TTGAAGACACTTCCGCCGTTTGCAGAAGGATATCGGATAGAAAATGTAAGATTCTTTTCTCGTTCTTGCAAAAAAATTTTTTTATTTCAGTTTGTTCCAAAATACAAAATTTCGGGGTGCACTATAAACGGAAATTTCCCGGAAATGAGCACTGCCATCTTTTGTTACATTCACAATTCGACACTATTCACAGCGGCCAATAAGACCATTTCTCAGGATTTAGTCGAGAATGGGTAATGTTTTTTTTACTGAATGTTCTATTTTGAAATCCTAAATTCCAGACTCTGTTCCCAGGATAAAATGTTCTATCTGCCAGACTGGAAGCAGTGGAAGAAATACATAACAAATAAAATTCGAAGAGTTGCATTTGTCCAACATCCTCTGGAACGATTCGCACGATCTTTTATGAGGCATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTKGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGCAACGAAAATGTTGGATGTTTCATGAGAAAATTAATAAAAGAACATGAAAAAGTGGCGCAAGGACTCGCTGGAAGAACACGAACCTATATTACCAACCATTTCAGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGTCAACGGTAAGTATTATGC</pcr_primer_p1>
		<pcr_primer_p2>GCAATTCATACATCTCTTGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>482</pcr_amplicon_size>
		<canonical_amplicon>ATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGC</canonical_amplicon>
		<polymorphic_amplicon>ATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTKGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26029</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>93400</contig_pos>
        <strand></strand>
        <context>ttctttatca[A/T]aatatcagaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCA</left_flank>
        <right_flank>AATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATGTAAGATTCTTTTCTCGTTCTTGCAAAAAAATTTTTTTATTTCAGTTTGTTCCAAAATACAAAATTTCGGGGTGCACTATAAACGGAAATTTCCCGGAAATGAGCACTGCCATCTTTTGTTACATTCACAATTCGACACTATTCACAGCGGCCAATAAGACCATTTCTCAGGATTTAGTCGAGAATGGGTAATGTTTTTTTTACTGAATGTTCTATTTTGAAATCCTAAATTCCAGACTCTGTTCCCAGGATAAAATGTTCTATCTGCCAGACTGGAAGCAGTGGAAGAAATACATAACAAATAAAATTCGAAGAGTTGCATTTGTCCAACATCCTCTGGAACGATTCGCACGATCTTTTATGAGGCATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGCAACGAAAATGTTGGATGTTTCATGAGAAAATTAATAAAAGAACATGAAAAAGTGGCGCAAGGACTCGCTGGAAGAACACGAACCTATATTACCAACCATTTCAGCCCTCAAAGTTGGTGAGTACAGTGAAAATACAATAGAGAAAT</canonical>
            <polymorphic>AAAATGTAAGATTCTTTTCTCGTTCTTGCAAAAAAATTTTTTTATTTCAGTTTGTTCCAAAATACAAAATTTCGGGGTGCACTATAAACGGAAATTTCCCGGAAATGAGCACTGCCATCTTTTGTTACATTCACAATTCGACACTATTCACAGCGGCCAATAAGACCATTTCTCAGGATTTAGTCGAGAATGGGTAATGTTTTTTTTACTGAATGTTCTATTTTGAAATCCTAAATTCCAGACTCTGTTCCCAGGATAAAATGTTCTATCTGCCAGACTGGAAGCAGTGGAAGAAATACATAACAAATAAAATTCGAAGAGTTGCATTTGTCCAACATCCTCTGGAACGATTCGCACGATCTTTTATGAGGCATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAWAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGCAACGAAAATGTTGGATGTTTCATGAGAAAATTAATAAAAGAACATGAAAAAGTGGCGCAAGGACTCGCTGGAAGAACACGAACCTATATTACCAACCATTTCAGCCCTCAAAGTTGGTGAGTACAGTGAAAATACAATAGAGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGTCAACGGTAAGTATTATGC</pcr_primer_p1>
		<pcr_primer_p2>GCAATTCATACATCTCTTGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>482</pcr_amplicon_size>
		<canonical_amplicon>ATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGC</canonical_amplicon>
		<polymorphic_amplicon>ATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAWAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26030</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>93464</contig_pos>
        <strand></strand>
        <context>taattgagct[C/A]aaagctgaca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCT</left_flank>
        <right_flank>AAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAATTTCGGGGTGCACTATAAACGGAAATTTCCCGGAAATGAGCACTGCCATCTTTTGTTACATTCACAATTCGACACTATTCACAGCGGCCAATAAGACCATTTCTCAGGATTTAGTCGAGAATGGGTAATGTTTTTTTTACTGAATGTTCTATTTTGAAATCCTAAATTCCAGACTCTGTTCCCAGGATAAAATGTTCTATCTGCCAGACTGGAAGCAGTGGAAGAAATACATAACAAATAAAATTCGAAGAGTTGCATTTGTCCAACATCCTCTGGAACGATTCGCACGATCTTTTATGAGGCATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGCAACGAAAATGTTGGATGTTTCATGAGAAAATTAATAAAAGAACATGAAAAAGTGGCGCAAGGACTCGCTGGAAGAACACGAACCTATATTACCAACCATTTCAGCCCTCAAAGTTGGTGAGTACAGTGAAAATACAATAGAGAAATCGCTCCTACGCTGCGCATCTCCGACTTGCACACTCTCTTGCCGCGAAGCCCACACAAAGTATAG</canonical>
            <polymorphic>CAAAATTTCGGGGTGCACTATAAACGGAAATTTCCCGGAAATGAGCACTGCCATCTTTTGTTACATTCACAATTCGACACTATTCACAGCGGCCAATAAGACCATTTCTCAGGATTTAGTCGAGAATGGGTAATGTTTTTTTTACTGAATGTTCTATTTTGAAATCCTAAATTCCAGACTCTGTTCCCAGGATAAAATGTTCTATCTGCCAGACTGGAAGCAGTGGAAGAAATACATAACAAATAAAATTCGAAGAGTTGCATTTGTCCAACATCCTCTGGAACGATTCGCACGATCTTTTATGAGGCATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTMAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGCAACGAAAATGTTGGATGTTTCATGAGAAAATTAATAAAAGAACATGAAAAAGTGGCGCAAGGACTCGCTGGAAGAACACGAACCTATATTACCAACCATTTCAGCCCTCAAAGTTGGTGAGTACAGTGAAAATACAATAGAGAAATCGCTCCTACGCTGCGCATCTCCGACTTGCACACTCTCTTGCCGCGAAGCCCACACAAAGTATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 452 30 17</canonical_bands>
                <polymorphic_bands>953 30 17</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>501 361 138</canonical_bands>
                <polymorphic_bands>639 361</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 314 138 30 17</canonical_bands>
                <polymorphic_bands>639 314 30 17</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGTCAACGGTAAGTATTATGC</pcr_primer_p1>
		<pcr_primer_p2>GCAATTCATACATCTCTTGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>482</pcr_amplicon_size>
		<canonical_amplicon>ATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGC</canonical_amplicon>
		<polymorphic_amplicon>ATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTMAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26031</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>93482</contig_pos>
        <strand></strand>
        <context>acagtgtggg[A/G]gccagtctat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGG</left_flank>
        <right_flank>GCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATAAACGGAAATTTCCCGGAAATGAGCACTGCCATCTTTTGTTACATTCACAATTCGACACTATTCACAGCGGCCAATAAGACCATTTCTCAGGATTTAGTCGAGAATGGGTAATGTTTTTTTTACTGAATGTTCTATTTTGAAATCCTAAATTCCAGACTCTGTTCCCAGGATAAAATGTTCTATCTGCCAGACTGGAAGCAGTGGAAGAAATACATAACAAATAAAATTCGAAGAGTTGCATTTGTCCAACATCCTCTGGAACGATTCGCACGATCTTTTATGAGGCATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGCAACGAAAATGTTGGATGTTTCATGAGAAAATTAATAAAAGAACATGAAAAAGTGGCGCAAGGACTCGCTGGAAGAACACGAACCTATATTACCAACCATTTCAGCCCTCAAAGTTGGTGAGTACAGTGAAAATACAATAGAGAAATCGCTCCTACGCTGCGCATCTCCGACTTGCACACTCTCTTGCCGCGAAGCCCACACAAAGTATAGTGGGCGGCGGAACCCGGG</canonical>
            <polymorphic>TATAAACGGAAATTTCCCGGAAATGAGCACTGCCATCTTTTGTTACATTCACAATTCGACACTATTCACAGCGGCCAATAAGACCATTTCTCAGGATTTAGTCGAGAATGGGTAATGTTTTTTTTACTGAATGTTCTATTTTGAAATCCTAAATTCCAGACTCTGTTCCCAGGATAAAATGTTCTATCTGCCAGACTGGAAGCAGTGGAAGAAATACATAACAAATAAAATTCGAAGAGTTGCATTTGTCCAACATCCTCTGGAACGATTCGCACGATCTTTTATGAGGCATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGRGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGCAACGAAAATGTTGGATGTTTCATGAGAAAATTAATAAAAGAACATGAAAAAGTGGCGCAAGGACTCGCTGGAAGAACACGAACCTATATTACCAACCATTTCAGCCCTCAAAGTTGGTGAGTACAGTGAAAATACAATAGAGAAATCGCTCCTACGCTGCGCATCTCCGACTTGCACACTCTCTTGCCGCGAAGCCCACACAAAGTATAGTGGGCGGCGGAACCCGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>267 200 124 101 90 74 62 34 15 14 7 6 6</canonical_bands>
                <polymorphic_bands>267 200 124 101 90 77 74 34 14 7 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGTCAACGGTAAGTATTATGC</pcr_primer_p1>
		<pcr_primer_p2>GCAATTCATACATCTCTTGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>482</pcr_amplicon_size>
		<canonical_amplicon>ATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGC</canonical_amplicon>
		<polymorphic_amplicon>ATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGRGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26032</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>93495</contig_pos>
        <strand></strand>
        <context>cagtctatta[C/T]aggttttaca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTA</left_flank>
        <right_flank>AGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCCGGAAATGAGCACTGCCATCTTTTGTTACATTCACAATTCGACACTATTCACAGCGGCCAATAAGACCATTTCTCAGGATTTAGTCGAGAATGGGTAATGTTTTTTTTACTGAATGTTCTATTTTGAAATCCTAAATTCCAGACTCTGTTCCCAGGATAAAATGTTCTATCTGCCAGACTGGAAGCAGTGGAAGAAATACATAACAAATAAAATTCGAAGAGTTGCATTTGTCCAACATCCTCTGGAACGATTCGCACGATCTTTTATGAGGCATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGCAACGAAAATGTTGGATGTTTCATGAGAAAATTAATAAAAGAACATGAAAAAGTGGCGCAAGGACTCGCTGGAAGAACACGAACCTATATTACCAACCATTTCAGCCCTCAAAGTTGGTGAGTACAGTGAAAATACAATAGAGAAATCGCTCCTACGCTGCGCATCTCCGACTTGCACACTCTCTTGCCGCGAAGCCCACACAAAGTATAGTGGGCGGCGGAACCCGGGAGGTGTCGGCCGC</canonical>
            <polymorphic>TTCCCGGAAATGAGCACTGCCATCTTTTGTTACATTCACAATTCGACACTATTCACAGCGGCCAATAAGACCATTTCTCAGGATTTAGTCGAGAATGGGTAATGTTTTTTTTACTGAATGTTCTATTTTGAAATCCTAAATTCCAGACTCTGTTCCCAGGATAAAATGTTCTATCTGCCAGACTGGAAGCAGTGGAAGAAATACATAACAAATAAAATTCGAAGAGTTGCATTTGTCCAACATCCTCTGGAACGATTCGCACGATCTTTTATGAGGCATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTAYAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGCAACGAAAATGTTGGATGTTTCATGAGAAAATTAATAAAAGAACATGAAAAAGTGGCGCAAGGACTCGCTGGAAGAACACGAACCTATATTACCAACCATTTCAGCCCTCAAAGTTGGTGAGTACAGTGAAAATACAATAGAGAAATCGCTCCTACGCTGCGCATCTCCGACTTGCACACTCTCTTGCCGCGAAGCCCACACAAAGTATAGTGGGCGGCGGAACCCGGGAGGTGTCGGCCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGTCAACGGTAAGTATTATGC</pcr_primer_p1>
		<pcr_primer_p2>GCAATTCATACATCTCTTGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>482</pcr_amplicon_size>
		<canonical_amplicon>ATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGC</canonical_amplicon>
		<polymorphic_amplicon>ATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTAYAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26033</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>93574</contig_pos>
        <strand></strand>
        <context>cagcaacaac[A/T]aaagtaacat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAAC</left_flank>
        <right_flank>AAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGATTTAGTCGAGAATGGGTAATGTTTTTTTTACTGAATGTTCTATTTTGAAATCCTAAATTCCAGACTCTGTTCCCAGGATAAAATGTTCTATCTGCCAGACTGGAAGCAGTGGAAGAAATACATAACAAATAAAATTCGAAGAGTTGCATTTGTCCAACATCCTCTGGAACGATTCGCACGATCTTTTATGAGGCATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGCAACGAAAATGTTGGATGTTTCATGAGAAAATTAATAAAAGAACATGAAAAAGTGGCGCAAGGACTCGCTGGAAGAACACGAACCTATATTACCAACCATTTCAGCCCTCAAAGTTGGTGAGTACAGTGAAAATACAATAGAGAAATCGCTCCTACGCTGCGCATCTCCGACTTGCACACTCTCTTGCCGCGAAGCCCACACAAAGTATAGTGGGCGGCGGAACCCGGGAGGTGTCGGCCGCTCAATTTGATAGGGTCGCTCGGTCAACTTCTATTCCTTACGTCTGGTGAGGATAGAAAAAGGACAGGTTTCGCTAAAAT</canonical>
            <polymorphic>AGGATTTAGTCGAGAATGGGTAATGTTTTTTTTACTGAATGTTCTATTTTGAAATCCTAAATTCCAGACTCTGTTCCCAGGATAAAATGTTCTATCTGCCAGACTGGAAGCAGTGGAAGAAATACATAACAAATAAAATTCGAAGAGTTGCATTTGTCCAACATCCTCTGGAACGATTCGCACGATCTTTTATGAGGCATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACWAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGCAACGAAAATGTTGGATGTTTCATGAGAAAATTAATAAAAGAACATGAAAAAGTGGCGCAAGGACTCGCTGGAAGAACACGAACCTATATTACCAACCATTTCAGCCCTCAAAGTTGGTGAGTACAGTGAAAATACAATAGAGAAATCGCTCCTACGCTGCGCATCTCCGACTTGCACACTCTCTTGCCGCGAAGCCCACACAAAGTATAGTGGGCGGCGGAACCCGGGAGGTGTCGGCCGCTCAATTTGATAGGGTCGCTCGGTCAACTTCTATTCCTTACGTCTGGTGAGGATAGAAAAAGGACAGGTTTCGCTAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGTCAACGGTAAGTATTATGC</pcr_primer_p1>
		<pcr_primer_p2>GCAATTCATACATCTCTTGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>482</pcr_amplicon_size>
		<canonical_amplicon>ATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGC</canonical_amplicon>
		<polymorphic_amplicon>ATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACWAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26034</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>93590</contig_pos>
        <strand></strand>
        <context>aacatgtttc[T/G]ttttccggat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTC</left_flank>
        <right_flank>TTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGTAATGTTTTTTTTACTGAATGTTCTATTTTGAAATCCTAAATTCCAGACTCTGTTCCCAGGATAAAATGTTCTATCTGCCAGACTGGAAGCAGTGGAAGAAATACATAACAAATAAAATTCGAAGAGTTGCATTTGTCCAACATCCTCTGGAACGATTCGCACGATCTTTTATGAGGCATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGCAACGAAAATGTTGGATGTTTCATGAGAAAATTAATAAAAGAACATGAAAAAGTGGCGCAAGGACTCGCTGGAAGAACACGAACCTATATTACCAACCATTTCAGCCCTCAAAGTTGGTGAGTACAGTGAAAATACAATAGAGAAATCGCTCCTACGCTGCGCATCTCCGACTTGCACACTCTCTTGCCGCGAAGCCCACACAAAGTATAGTGGGCGGCGGAACCCGGGAGGTGTCGGCCGCTCAATTTGATAGGGTCGCTCGGTCAACTTCTATTCCTTACGTCTGGTGAGGATAGAAAAAGGACAGGTTTCGCTAAAATACTAGCCGAACGCCAA</canonical>
            <polymorphic>TGGGTAATGTTTTTTTTACTGAATGTTCTATTTTGAAATCCTAAATTCCAGACTCTGTTCCCAGGATAAAATGTTCTATCTGCCAGACTGGAAGCAGTGGAAGAAATACATAACAAATAAAATTCGAAGAGTTGCATTTGTCCAACATCCTCTGGAACGATTCGCACGATCTTTTATGAGGCATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCKTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGCAACGAAAATGTTGGATGTTTCATGAGAAAATTAATAAAAGAACATGAAAAAGTGGCGCAAGGACTCGCTGGAAGAACACGAACCTATATTACCAACCATTTCAGCCCTCAAAGTTGGTGAGTACAGTGAAAATACAATAGAGAAATCGCTCCTACGCTGCGCATCTCCGACTTGCACACTCTCTTGCCGCGAAGCCCACACAAAGTATAGTGGGCGGCGGAACCCGGGAGGTGTCGGCCGCTCAATTTGATAGGGTCGCTCGGTCAACTTCTATTCCTTACGTCTGGTGAGGATAGAAAAAGGACAGGTTTCGCTAAAATACTAGCCGAACGCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGTCAACGGTAAGTATTATGC</pcr_primer_p1>
		<pcr_primer_p2>GCAATTCATACATCTCTTGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>482</pcr_amplicon_size>
		<canonical_amplicon>ATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGC</canonical_amplicon>
		<polymorphic_amplicon>ATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCKTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26035</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>93656</contig_pos>
        <strand></strand>
        <context>ctctcagcca[T/C]ggccactgat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCA</left_flank>
        <right_flank>GGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAATGTTCTATCTGCCAGACTGGAAGCAGTGGAAGAAATACATAACAAATAAAATTCGAAGAGTTGCATTTGTCCAACATCCTCTGGAACGATTCGCACGATCTTTTATGAGGCATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGCAACGAAAATGTTGGATGTTTCATGAGAAAATTAATAAAAGAACATGAAAAAGTGGCGCAAGGACTCGCTGGAAGAACACGAACCTATATTACCAACCATTTCAGCCCTCAAAGTTGGTGAGTACAGTGAAAATACAATAGAGAAATCGCTCCTACGCTGCGCATCTCCGACTTGCACACTCTCTTGCCGCGAAGCCCACACAAAGTATAGTGGGCGGCGGAACCCGGGAGGTGTCGGCCGCTCAATTTGATAGGGTCGCTCGGTCAACTTCTATTCCTTACGTCTGGTGAGGATAGAAAAAGGACAGGTTTCGCTAAAATACTAGCCGAACGCCAACATGTAGAGACACCTTGGCTGTCTGAGGACGTAAAGATTGGAAAGTTTTGAAATTGCAGGAACTGC</canonical>
            <polymorphic>TAAAATGTTCTATCTGCCAGACTGGAAGCAGTGGAAGAAATACATAACAAATAAAATTCGAAGAGTTGCATTTGTCCAACATCCTCTGGAACGATTCGCACGATCTTTTATGAGGCATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCAYGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGCAACGAAAATGTTGGATGTTTCATGAGAAAATTAATAAAAGAACATGAAAAAGTGGCGCAAGGACTCGCTGGAAGAACACGAACCTATATTACCAACCATTTCAGCCCTCAAAGTTGGTGAGTACAGTGAAAATACAATAGAGAAATCGCTCCTACGCTGCGCATCTCCGACTTGCACACTCTCTTGCCGCGAAGCCCACACAAAGTATAGTGGGCGGCGGAACCCGGGAGGTGTCGGCCGCTCAATTTGATAGGGTCGCTCGGTCAACTTCTATTCCTTACGTCTGGTGAGGATAGAAAAAGGACAGGTTTCGCTAAAATACTAGCCGAACGCCAACATGTAGAGACACCTTGGCTGTCTGAGGACGTAAAGATTGGAAAGTTTTGAAATTGCAGGAACTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGGCCA</site>
                <isoschizomers>
                    <enzyme>BalI</enzyme>
                    <enzyme>MlsI</enzyme>
                    <enzyme>MluNI</enzyme>
                    <enzyme>MscI</enzyme>
                    <enzyme>Msp20I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCATGG</site>
                <isoschizomers>
                    <enzyme>Bsp19I</enzyme>
                    <enzyme>NcoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>497 450 53</canonical_bands>
                <polymorphic_bands>947 53</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>503 390 107</canonical_bands>
                <polymorphic_bands>610 390</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>387 333 167 107 6</canonical_bands>
                <polymorphic_bands>440 387 167 6</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>426 294 121 72 65 22</canonical_bands>
                <polymorphic_bands>426 294 193 65 22</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGTCAACGGTAAGTATTATGC</pcr_primer_p1>
		<pcr_primer_p2>GCAATTCATACATCTCTTGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>482</pcr_amplicon_size>
		<canonical_amplicon>ATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCATGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGC</canonical_amplicon>
		<polymorphic_amplicon>ATTGTCAACGGTAAGTATTATGCTGCTATCGTAAAACCTGTAATAGAAGGGCCCCTAACTGTGAGCCAATTTATCTCGGTTCCTGTTGGAGATATGAGAAAGTTGCCAACTAATAAATTCTTTATCAAAATATCAGAAACATTTTACCAGTTGACCACTTTTTGATATCTTTTCCAGGATATAATTGAGCTCAAAGCTGACAGTGTGGGAGCCAGTCTATTACAGGTTTTACAGTATGCAAGAATGAGAGATGTTTAAGAGAAACACCGGTGGCCGTGGCCGAAGGTCCCGCAGCAACAACAAAAGTAACATGTTTCTTTTTCCGGATTTTTTTTCGTTTTCGCGCGTTTTCAGTCAAGTTCTCGTAGTAGGACTCTCAGCCAYGGCCACTGATGCTTCTCTTCCATAACTACGAATTTTTGTACCAGAATAATATTTCAACGAAAATGTATATTTTTAGAGACAAGAGATGTATGAATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26036</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>144875</contig_pos>
        <strand>+</strand>
        <context>CAGGATGTTT[G/T]TTTCAAATTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGTTCTAATTCAAAGTTGAAACATGCCCATAAGATGAGTCAGGATGTTT</left_flank>
        <right_flank>TTTCAAATTGTTAACATTTTGATAAAAATTGATATAAAAGATGAGAGCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGATATAAAAAAGTGAAAACTAAAAATGTCTCGTACAATACCACCTCTATTTCATCGGCTGACAGATTTTTGATATCTCTCATAGGAGCCGAGATGATTGAGCTCAAAGTGCATGTGCAGTAACGGTGATAACTGCGTCGCCAGAAGCGGCGCCTGTTTGGAGCTTGATTATCTCATTTTCTATAAGAGACATTAAACATTTGAAAACTGAAAAAATATTTATCAAAATATTATTTAAACATTTTACTAGCTGACGACATTTTGATAACTCTCATAGGATCGGGGATAATTTGGCTCAAATGATAGTGACGATCTGAAAAAGGAGTTTCAGGGCACCTTGGAGTGCCGAGAACATCGAGTTGCCAAATATGCTGAATTTTTGAATTTCTTGACCTTGTTAAAACAACTTTCATATTTTTGGAACATGGAAAATAAAACCTTCCTTTTTTGTTCTAATTCAAAGTTGAAACATGCCCATAAGATGAGTCAGGATGTTTGTTTCAAATTGTTAACATTTTGATAAAAATTGATATAAAAGATGAGAGCAAATGACCTAGAAAAAACTAGGCCATGATCTGGAAAAAAATTAGGTCATGACCAAGAAAAATGAGGTCATGATCTGGAAAAAACTAGGTCGTGGCCTGGAAAAAACTAGGTTATGATCTGGAAAAAACTAGGTCAGGACCTGGAAAAAATTAGGTCATGACCTGGAAAAAACTAGGTCGTGGCCTGGAAAAAACTAGGTTATGATCTGGAAAAAACTAGGTCATGACCTGGAAAAAATTAGGTCATGACCTAGAAGAAACATGAACTGGAAAAAATTAGGTCATGACCTGGAAAAAACTAGGTCGTGGCCTGGAAAAAACTAGGTTATGATCTGGAAAAAACTAGGTCATGACCTGGAAAAAATTAGGTCATGACCTAGAAGAAACATGAACTGGAAAAAACTAGGTCATGGCCTAGAAAAAACAGGTCATGGCCTAGAAAAAACATGACCT</canonical>
            <polymorphic>AAAGATATAAAAAAGTGAAAACTAAAAATGTCTCGTACAATACCACCTCTATTTCATCGGCTGACAGATTTTTGATATCTCTCATAGGAGCCGAGATGATTGAGCTCAAAGTGCATGTGCAGTAACGGTGATAACTGCGTCGCCAGAAGCGGCGCCTGTTTGGAGCTTGATTATCTCATTTTCTATAAGAGACATTAAACATTTGAAAACTGAAAAAATATTTATCAAAATATTATTTAAACATTTTACTAGCTGACGACATTTTGATAACTCTCATAGGATCGGGGATAATTTGGCTCAAATGATAGTGACGATCTGAAAAAGGAGTTTCAGGGCACCTTGGAGTGCCGAGAACATCGAGTTGCCAAATATGCTGAATTTTTGAATTTCTTGACCTTGTTAAAACAACTTTCATATTTTTGGAACATGGAAAATAAAACCTTCCTTTTTTGTTCTAATTCAAAGTTGAAACATGCCCATAAGATGAGTCAGGATGTTTKTTTCAAATTGTTAACATTTTGATAAAAATTGATATAAAAGATGAGAGCAAATGACCTAGAAAAAACTAGGCCATGATCTGGAAAAAAATTAGGTCATGACCAAGAAAAATGAGGTCATGATCTGGAAAAAACTAGGTCGTGGCCTGGAAAAAACTAGGTTATGATCTGGAAAAAACTAGGTCAGGACCTGGAAAAAATTAGGTCATGACCTGGAAAAAACTAGGTCGTGGCCTGGAAAAAACTAGGTTATGATCTGGAAAAAACTAGGTCATGACCTGGAAAAAATTAGGTCATGACCTAGAAGAAACATGAACTGGAAAAAATTAGGTCATGACCTGGAAAAAACTAGGTCGTGGCCTGGAAAAAACTAGGTTATGATCTGGAAAAAACTAGGTCATGACCTGGAAAAAATTAGGTCATGACCTAGAAGAAACATGAACTGGAAAAAACTAGGTCATGGCCTAGAAAAAACAGGTCATGGCCTAGAAAAAACATGACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTTGGAACATGGAAAATAA</pcr_primer_p1>
		<pcr_primer_p2>AATCAAGACGTTAAATTTTGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>743</pcr_amplicon_size>
		<canonical_amplicon>TATTTTTGGAACATGGAAAATAAAACCTTCCTTTTTTGTTCTAATTCAAAGTTGAAACATGCCCATAAGATGAGTCAGGATGTTTGTTTCAAATTGTTAACATTTTGAT</canonical_amplicon>
		<polymorphic_amplicon>TATTTTTGGAACATGGAAAATAAAACCTTCCTTTTTTGTTCTAATTCAAAGTTGAAACATGCCCATAAGATGAGTCAGGATGTTTKTTTCAAATTGTTAACATTTTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26037</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>160173</contig_pos>
        <strand>+</strand>
        <context>AACAACGAGC[A/G]AGGCGATGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAAATTGGCGAAGAAAATAAGGTAAACAAACCTGAAAAAACAACGAGC</left_flank>
        <right_flank>AGGCGATGAATATTGCTTCTAGAAACGGAAGCGATCGTGAGATTTGGCAT</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGACTTCCAGCTGTCAAGGAGGCGGTTTTTGTGTAGATTGGTGCTCCATTGGACATTGTGAGGACATGTGGCTCCTGAAAAACAAAAATTGAAAGAATACAAATTCTCATAGAAAAAATGTGAAAATCAAGAATTTTCCTTACCTTGTGTGTATCTCGATACTGCTTCAACTGATCATCAGCAATGGCTCCTGGCTGGGAATCGCCGGCTGAAAGAGACATTTTTAATATTAGGTTGTACAATTGTTGAGCACAATAGCGAATGTAACTCGATACACACTTGAATTAAATATGCGAAAAGAAAACTCACACAAATTGATCGCATGCGGAAGCATCGGCATTTTGGGGTCCTTTGATTGTGCGTATTTCGTTGAATCGACACTGAAAAATTAGGATTAGAGAGAAAAGTGCGAAAAAAGAGATTGTGCCGGAAACGGATTAGAAATTTCGAAAAATTGGCGAAGAAAATAAGGTAAACAAACCTGAAAAAACAACGAGCAAGGCGATGAATATTGCTTCTAGAAACGGAAGCGATCGTGAGATTTGGCATAATTATGCTTATTCGACTGGAAAAACAGCTTTTTCGAGTTGTCAACAAATCTATTTAATAAGATTAAACACGCAGTCAACAGTTTTTTGTTCTGAAAACAATATTTTCAGCCAATTACTGCAGTAAAATTTTTAAAAAAATTGAAGAAAAAATCGGAAACGGATATCCAATTTTTTCATTTTCTTATGAATTTTCTAGGATTTCGTCTTCTCTCCGACTATTATCCTTGTCAGCAGGGTTGCGGATTGACGGGCCGGCCCGTCGGCCCGGCCAGCCCGTCGGTCCGTCCATAGCTTTTTCAGAGAAAAATTTTTTTGATGAAAAATTTTTTGAGCGAACATAGGCACCAACGGGTGAAAAACAACAACGAAAACAAGACGTAAACAACCTGTAAACAACCTGTAAACAACTTGTAAACAACTTAAAGGCGCACCGTAAATCGACACAAAT</canonical>
            <polymorphic>ACGACTTCCAGCTGTCAAGGAGGCGGTTTTTGTGTAGATTGGTGCTCCATTGGACATTGTGAGGACATGTGGCTCCTGAAAAACAAAAATTGAAAGAATACAAATTCTCATAGAAAAAATGTGAAAATCAAGAATTTTCCTTACCTTGTGTGTATCTCGATACTGCTTCAACTGATCATCAGCAATGGCTCCTGGCTGGGAATCGCCGGCTGAAAGAGACATTTTTAATATTAGGTTGTACAATTGTTGAGCACAATAGCGAATGTAACTCGATACACACTTGAATTAAATATGCGAAAAGAAAACTCACACAAATTGATCGCATGCGGAAGCATCGGCATTTTGGGGTCCTTTGATTGTGCGTATTTCGTTGAATCGACACTGAAAAATTAGGATTAGAGAGAAAAGTGCGAAAAAAGAGATTGTGCCGGAAACGGATTAGAAATTTCGAAAAATTGGCGAAGAAAATAAGGTAAACAAACCTGAAAAAACAACGAGCRAGGCGATGAATATTGCTTCTAGAAACGGAAGCGATCGTGAGATTTGGCATAATTATGCTTATTCGACTGGAAAAACAGCTTTTTCGAGTTGTCAACAAATCTATTTAATAAGATTAAACACGCAGTCAACAGTTTTTTGTTCTGAAAACAATATTTTCAGCCAATTACTGCAGTAAAATTTTTAAAAAAATTGAAGAAAAAATCGGAAACGGATATCCAATTTTTTCATTTTCTTATGAATTTTCTAGGATTTCGTCTTCTCTCCGACTATTATCCTTGTCAGCAGGGTTGCGGATTGACGGGCCGGCCCGTCGGCCCGGCCAGCCCGTCGGTCCGTCCATAGCTTTTTCAGAGAAAAATTTTTTTGATGAAAAATTTTTTGAGCGAACATAGGCACCAACGGGTGAAAAACAACAACGAAAACAAGACGTAAACAACCTGTAAACAACCTGTAAACAACTTGTAAACAACTTAAAGGCGCACCGTAAATCGACACAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTAGGATTAGAGAGAAAAGTGC</pcr_primer_p1>
		<pcr_primer_p2>AAACTGTTGACTGCGTGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATTAGGATTAGAGAGAAAAGTGCGAAAAAAGAGATTGTGCCGGAAACGGATTAGAAATTTCGAAAAATTGGCGAAGAAAATAAGGTAAACAAACCTGAAAAAACAACGAGCAAGGCGATGAATATTGCTTCTAGAAACGGAAGCGATCGTGAGATTTGGCATAATTATGCTTATTCGACTGGAAAAACAGCTTTTTCGAGTTGTCAACAAATCTATTTAATAAGATTAAACACGCAGTCAACAGTTT</canonical_amplicon>
		<polymorphic_amplicon>AATTAGGATTAGAGAGAAAAGTGCGAAAAAAGAGATTGTGCCGGAAACGGATTAGAAATTTCGAAAAATTGGCGAAGAAAATAAGGTAAACAAACCTGAAAAAACAACGAGCRAGGCGATGAATATTGCTTCTAGAAACGGAAGCGATCGTGAGATTTGGCATAATTATGCTTATTCGACTGGAAAAACAGCTTTTTCGAGTTGTCAACAAATCTATTTAATAAGATTAAACACGCAGTCAACAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26038</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>160190</contig_pos>
        <strand>+</strand>
        <context>TGAATATTGC[C/T]TCTAGAAACG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATAAGGTAAACAAACCTGAAAAAACAACGAGCAAGGCGATGAATATTGC</left_flank>
        <right_flank>TCTAGAAACGGAAGCGATCGTGAGATTTGGCATAATTATGCTTATTCGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGAGGCGGTTTTTGTGTAGATTGGTGCTCCATTGGACATTGTGAGGACATGTGGCTCCTGAAAAACAAAAATTGAAAGAATACAAATTCTCATAGAAAAAATGTGAAAATCAAGAATTTTCCTTACCTTGTGTGTATCTCGATACTGCTTCAACTGATCATCAGCAATGGCTCCTGGCTGGGAATCGCCGGCTGAAAGAGACATTTTTAATATTAGGTTGTACAATTGTTGAGCACAATAGCGAATGTAACTCGATACACACTTGAATTAAATATGCGAAAAGAAAACTCACACAAATTGATCGCATGCGGAAGCATCGGCATTTTGGGGTCCTTTGATTGTGCGTATTTCGTTGAATCGACACTGAAAAATTAGGATTAGAGAGAAAAGTGCGAAAAAAGAGATTGTGCCGGAAACGGATTAGAAATTTCGAAAAATTGGCGAAGAAAATAAGGTAAACAAACCTGAAAAAACAACGAGCAAGGCGATGAATATTGCTTCTAGAAACGGAAGCGATCGTGAGATTTGGCATAATTATGCTTATTCGACTGGAAAAACAGCTTTTTCGAGTTGTCAACAAATCTATTTAATAAGATTAAACACGCAGTCAACAGTTTTTTGTTCTGAAAACAATATTTTCAGCCAATTACTGCAGTAAAATTTTTAAAAAAATTGAAGAAAAAATCGGAAACGGATATCCAATTTTTTCATTTTCTTATGAATTTTCTAGGATTTCGTCTTCTCTCCGACTATTATCCTTGTCAGCAGGGTTGCGGATTGACGGGCCGGCCCGTCGGCCCGGCCAGCCCGTCGGTCCGTCCATAGCTTTTTCAGAGAAAAATTTTTTTGATGAAAAATTTTTTGAGCGAACATAGGCACCAACGGGTGAAAAACAACAACGAAAACAAGACGTAAACAACCTGTAAACAACCTGTAAACAACTTGTAAACAACTTAAAGGCGCACCGTAAATCGACACAAATTTTTTCAATTTAATTCC</canonical>
            <polymorphic>AGGAGGCGGTTTTTGTGTAGATTGGTGCTCCATTGGACATTGTGAGGACATGTGGCTCCTGAAAAACAAAAATTGAAAGAATACAAATTCTCATAGAAAAAATGTGAAAATCAAGAATTTTCCTTACCTTGTGTGTATCTCGATACTGCTTCAACTGATCATCAGCAATGGCTCCTGGCTGGGAATCGCCGGCTGAAAGAGACATTTTTAATATTAGGTTGTACAATTGTTGAGCACAATAGCGAATGTAACTCGATACACACTTGAATTAAATATGCGAAAAGAAAACTCACACAAATTGATCGCATGCGGAAGCATCGGCATTTTGGGGTCCTTTGATTGTGCGTATTTCGTTGAATCGACACTGAAAAATTAGGATTAGAGAGAAAAGTGCGAAAAAAGAGATTGTGCCGGAAACGGATTAGAAATTTCGAAAAATTGGCGAAGAAAATAAGGTAAACAAACCTGAAAAAACAACGAGCAAGGCGATGAATATTGCYTCTAGAAACGGAAGCGATCGTGAGATTTGGCATAATTATGCTTATTCGACTGGAAAAACAGCTTTTTCGAGTTGTCAACAAATCTATTTAATAAGATTAAACACGCAGTCAACAGTTTTTTGTTCTGAAAACAATATTTTCAGCCAATTACTGCAGTAAAATTTTTAAAAAAATTGAAGAAAAAATCGGAAACGGATATCCAATTTTTTCATTTTCTTATGAATTTTCTAGGATTTCGTCTTCTCTCCGACTATTATCCTTGTCAGCAGGGTTGCGGATTGACGGGCCGGCCCGTCGGCCCGGCCAGCCCGTCGGTCCGTCCATAGCTTTTTCAGAGAAAAATTTTTTTGATGAAAAATTTTTTGAGCGAACATAGGCACCAACGGGTGAAAAACAACAACGAAAACAAGACGTAAACAACCTGTAAACAACCTGTAAACAACTTGTAAACAACTTAAAGGCGCACCGTAAATCGACACAAATTTTTTCAATTTAATTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTAGGATTAGAGAGAAAAGTGC</pcr_primer_p1>
		<pcr_primer_p2>AAACTGTTGACTGCGTGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATTAGGATTAGAGAGAAAAGTGCGAAAAAAGAGATTGTGCCGGAAACGGATTAGAAATTTCGAAAAATTGGCGAAGAAAATAAGGTAAACAAACCTGAAAAAACAACGAGCAAGGCGATGAATATTGCTTCTAGAAACGGAAGCGATCGTGAGATTTGGCATAATTATGCTTATTCGACTGGAAAAACAGCTTTTTCGAGTTGTCAACAAATCTATTTAATAAGATTAAACACGCAGTCAACAGTTT</canonical_amplicon>
		<polymorphic_amplicon>AATTAGGATTAGAGAGAAAAGTGCGAAAAAAGAGATTGTGCCGGAAACGGATTAGAAATTTCGAAAAATTGGCGAAGAAAATAAGGTAAACAAACCTGAAAAAACAACGAGCAAGGCGATGAATATTGCYTCTAGAAACGGAAGCGATCGTGAGATTTGGCATAATTATGCTTATTCGACTGGAAAAACAGCTTTTTCGAGTTGTCAACAAATCTATTTAATAAGATTAAACACGCAGTCAACAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26039</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>160347</contig_pos>
        <strand>+</strand>
        <context>ATTACTGCAG[A/G]AAAATTTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTCAACAGTTTTTTGTTCTGAAAACAATATTTTCAGCCAATTACTGCAG</left_flank>
        <right_flank>AAAATTTTTAAAAAAATTGAAGAAAAAATCGGAAACGGATATCCAATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCATCAGCAATGGCTCCTGGCTGGGAATCGCCGGCTGAAAGAGACATTTTTAATATTAGGTTGTACAATTGTTGAGCACAATAGCGAATGTAACTCGATACACACTTGAATTAAATATGCGAAAAGAAAACTCACACAAATTGATCGCATGCGGAAGCATCGGCATTTTGGGGTCCTTTGATTGTGCGTATTTCGTTGAATCGACACTGAAAAATTAGGATTAGAGAGAAAAGTGCGAAAAAAGAGATTGTGCCGGAAACGGATTAGAAATTTCGAAAAATTGGCGAAGAAAATAAGGTAAACAAACCTGAAAAAACAACGAGCAAGGCGATGAATATTGCTTCTAGAAACGGAAGCGATCGTGAGATTTGGCATAATTATGCTTATTCGACTGGAAAAACAGCTTTTTCGAGTTGTCAACAAATCTATTTAATAAGATTAAACACGCAGTCAACAGTTTTTTGTTCTGAAAACAATATTTTCAGCCAATTACTGCAGTAAAATTTTTAAAAAAATTGAAGAAAAAATCGGAAACGGATATCCAATTTTTTCATTTTCTTATGAATTTTCTAGGATTTCGTCTTCTCTCCGACTATTATCCTTGTCAGCAGGGTTGCGGATTGACGGGCCGGCCCGTCGGCCCGGCCAGCCCGTCGGTCCGTCCATAGCTTTTTCAGAGAAAAATTTTTTTGATGAAAAATTTTTTGAGCGAACATAGGCACCAACGGGTGAAAAACAACAACGAAAACAAGACGTAAACAACCTGTAAACAACCTGTAAACAACTTGTAAACAACTTAAAGGCGCACCGTAAATCGACACAAATTTTTTCAATTTAATTCCTAAAATTTTTCGGATTTTTTGTTACTCTTGTTGTTTTTAAAATAAATCGGTTCATGAAAAATTTGTATCCCGGATTAAAACCTCAAGTGGGTAATTGATAACGTGAATAAAAAACTTTCATTCAAATCGGTTGAGTTTGAGCTGAGTTACAGTCCCG</canonical>
            <polymorphic>ATCATCAGCAATGGCTCCTGGCTGGGAATCGCCGGCTGAAAGAGACATTTTTAATATTAGGTTGTACAATTGTTGAGCACAATAGCGAATGTAACTCGATACACACTTGAATTAAATATGCGAAAAGAAAACTCACACAAATTGATCGCATGCGGAAGCATCGGCATTTTGGGGTCCTTTGATTGTGCGTATTTCGTTGAATCGACACTGAAAAATTAGGATTAGAGAGAAAAGTGCGAAAAAAGAGATTGTGCCGGAAACGGATTAGAAATTTCGAAAAATTGGCGAAGAAAATAAGGTAAACAAACCTGAAAAAACAACGAGCAAGGCGATGAATATTGCTTCTAGAAACGGAAGCGATCGTGAGATTTGGCATAATTATGCTTATTCGACTGGAAAAACAGCTTTTTCGAGTTGTCAACAAATCTATTTAATAAGATTAAACACGCAGTCAACAGTTTTTTGTTCTGAAAACAATATTTTCAGCCAATTACTGCAGRAAAATTTTTAAAAAAATTGAAGAAAAAATCGGAAACGGATATCCAATTTTTTCATTTTCTTATGAATTTTCTAGGATTTCGTCTTCTCTCCGACTATTATCCTTGTCAGCAGGGTTGCGGATTGACGGGCCGGCCCGTCGGCCCGGCCAGCCCGTCGGTCCGTCCATAGCTTTTTCAGAGAAAAATTTTTTTGATGAAAAATTTTTTGAGCGAACATAGGCACCAACGGGTGAAAAACAACAACGAAAACAAGACGTAAACAACCTGTAAACAACCTGTAAACAACTTGTAAACAACTTAAAGGCGCACCGTAAATCGACACAAATTTTTTCAATTTAATTCCTAAAATTTTTCGGATTTTTTGTTACTCTTGTTGTTTTTAAAATAAATCGGTTCATGAAAAATTTGTATCCCGGATTAAAACCTCAAGTGGGTAATTGATAACGTGAATAAAAAACTTTCATTCAAATCGGTTGAGTTTGAGCTGAGTTACAGTCCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCGTGAGATTTGGCATAA</pcr_primer_p1>
		<pcr_primer_p2>AAGGATAATAGTCGGAGAGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GATCGTGAGATTTGGCATAATTATGCTTATTCGACTGGAAAAACAGCTTTTTCGAGTTGTCAACAAATCTATTTAATAAGATTAAACACGCAGTCAACAGTTTTTTGTTCTGAAAACAATATTTTCAGCCAATTACTGCAGTAAAATTTTTAAAAAAATTGAAGAAAAAATCGGAAACGGATATCCAATTTTTTCATTTTCTTATGAATTTTCTAGGATTTCGTCTTCTCTCCGACTATTATCCTT</canonical_amplicon>
		<polymorphic_amplicon>GATCGTGAGATTTGGCATAATTATGCTTATTCGACTGGAAAAACAGCTTTTTCGAGTTGTCAACAAATCTATTTAATAAGATTAAACACGCAGTCAACAGTTTTTTGTTCTGAAAACAATATTTTCAGCCAATTACTGCAGRAAAATTTTTAAAAAAATTGAAGAAAAAATCGGAAACGGATATCCAATTTTTTCATTTTCTTATGAATTTTCTAGGATTTCGTCTTCTCTCCGACTATTATCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26040</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>160468</contig_pos>
        <strand>+</strand>
        <context>AGGGTTGCGG[A/G]TTGACGGGCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAGGATTTCGTCTTCTCTCCGACTATTATCCTTGTCAGCAGGGTTGCGG</left_flank>
        <right_flank>TTGACGGGCCGGCCCGTCGGCCCGGCCAGCCCGTCGGTCCGTCCATAGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAGAAAACTCACACAAATTGATCGCATGCGGAAGCATCGGCATTTTGGGGTCCTTTGATTGTGCGTATTTCGTTGAATCGACACTGAAAAATTAGGATTAGAGAGAAAAGTGCGAAAAAAGAGATTGTGCCGGAAACGGATTAGAAATTTCGAAAAATTGGCGAAGAAAATAAGGTAAACAAACCTGAAAAAACAACGAGCAAGGCGATGAATATTGCTTCTAGAAACGGAAGCGATCGTGAGATTTGGCATAATTATGCTTATTCGACTGGAAAAACAGCTTTTTCGAGTTGTCAACAAATCTATTTAATAAGATTAAACACGCAGTCAACAGTTTTTTGTTCTGAAAACAATATTTTCAGCCAATTACTGCAGTAAAATTTTTAAAAAAATTGAAGAAAAAATCGGAAACGGATATCCAATTTTTTCATTTTCTTATGAATTTTCTAGGATTTCGTCTTCTCTCCGACTATTATCCTTGTCAGCAGGGTTGCGGATTGACGGGCCGGCCCGTCGGCCCGGCCAGCCCGTCGGTCCGTCCATAGCTTTTTCAGAGAAAAATTTTTTTGATGAAAAATTTTTTGAGCGAACATAGGCACCAACGGGTGAAAAACAACAACGAAAACAAGACGTAAACAACCTGTAAACAACCTGTAAACAACTTGTAAACAACTTAAAGGCGCACCGTAAATCGACACAAATTTTTTCAATTTAATTCCTAAAATTTTTCGGATTTTTTGTTACTCTTGTTGTTTTTAAAATAAATCGGTTCATGAAAAATTTGTATCCCGGATTAAAACCTCAAGTGGGTAATTGATAACGTGAATAAAAAACTTTCATTCAAATCGGTTGAGTTTGAGCTGAGTTACAGTCCCGAACATACATGTGGAAAATTCGGAGTGGAAATTTTTTACAGTTTGCAGACGGGCCGGGCNNNNNNNNNNNNTTGTTTTTTGCGGTATTTGAAAATATATTCGACGAAATTTGCTGCAAAATA</canonical>
            <polymorphic>GAAAAGAAAACTCACACAAATTGATCGCATGCGGAAGCATCGGCATTTTGGGGTCCTTTGATTGTGCGTATTTCGTTGAATCGACACTGAAAAATTAGGATTAGAGAGAAAAGTGCGAAAAAAGAGATTGTGCCGGAAACGGATTAGAAATTTCGAAAAATTGGCGAAGAAAATAAGGTAAACAAACCTGAAAAAACAACGAGCAAGGCGATGAATATTGCTTCTAGAAACGGAAGCGATCGTGAGATTTGGCATAATTATGCTTATTCGACTGGAAAAACAGCTTTTTCGAGTTGTCAACAAATCTATTTAATAAGATTAAACACGCAGTCAACAGTTTTTTGTTCTGAAAACAATATTTTCAGCCAATTACTGCAGTAAAATTTTTAAAAAAATTGAAGAAAAAATCGGAAACGGATATCCAATTTTTTCATTTTCTTATGAATTTTCTAGGATTTCGTCTTCTCTCCGACTATTATCCTTGTCAGCAGGGTTGCGGRTTGACGGGCCGGCCCGTCGGCCCGGCCAGCCCGTCGGTCCGTCCATAGCTTTTTCAGAGAAAAATTTTTTTGATGAAAAATTTTTTGAGCGAACATAGGCACCAACGGGTGAAAAACAACAACGAAAACAAGACGTAAACAACCTGTAAACAACCTGTAAACAACTTGTAAACAACTTAAAGGCGCACCGTAAATCGACACAAATTTTTTCAATTTAATTCCTAAAATTTTTCGGATTTTTTGTTACTCTTGTTGTTTTTAAAATAAATCGGTTCATGAAAAATTTGTATCCCGGATTAAAACCTCAAGTGGGTAATTGATAACGTGAATAAAAAACTTTCATTCAAATCGGTTGAGTTTGAGCTGAGTTACAGTCCCGAACATACATGTGGAAAATTCGGAGTGGAAATTTTTTACAGTTTGCAGACGGGCCGGGCNNNNNNNNNNNNTTGTTTTTTGCGGTATTTGAAAATATATTCGACGAAATTTGCTGCAAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTTTCTAGGATTTCGTCTTC</pcr_primer_p1>
		<pcr_primer_p2>CCTTTAAGTTGTTTACAAGTTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GAATTTTCTAGGATTTCGTCTTCTCTCCGACTATTATCCTTGTCAGCAGGGTTGCGGATTGACGGGCCGGCCCGTCGGCCCGGCCAGCCCGTCGGTCCGTCCATAGCTTTTTCAGAGAAAAATTTTTTTGATGAAAAATTTTTTGAGCGAACATAGGCACCAACGGGTGAAAAACAACAACGAAAACAAGACGTAAACAACCTGTAAACAACCTGTAAACAACTTGTAAACAACTTAAAGG</canonical_amplicon>
		<polymorphic_amplicon>GAATTTTCTAGGATTTCGTCTTCTCTCCGACTATTATCCTTGTCAGCAGGGTTGCGGRTTGACGGGCCGGCCCGTCGGCCCGGCCAGCCCGTCGGTCCGTCCATAGCTTTTTCAGAGAAAAATTTTTTTGATGAAAAATTTTTTGAGCGAACATAGGCACCAACGGGTGAAAAACAACAACGAAAACAAGACGTAAACAACCTGTAAACAACCTGTAAACAACTTGTAAACAACTTAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26041</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>163838</contig_pos>
        <strand></strand>
        <context>ttttgcaaac[A/G]caatcacgtc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGGATTACTGTAGAAACCTAATTTCCTTTTTCGTATTTTTTTTGCAAAC</left_flank>
        <right_flank>CAATCACGTCAAAGTGCAGATAAAAACTGATTTGTTGTCTGAAAAAAAAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAACTAGATTTTCCAAAAACTGGGAGGCTTCAGTCAAGTATTCCATCTCCAAATCACTATGCCTAGTTGCGGTCCGTTTGGACAGCGTCAACCGAAATTTTGGGCAAATTCGTAGTTTTCGGCTACACGGAAACTCTGCTCGTTATCTGGTTTTGAATAGAAAATTTCAGAAAACTGTAAAAATTTGAATATCGTAGTTGTGACGATCCATATCGGTAATCTACAAAAAAATCGGAGCGGTGGGAAAATCGACGGTGGCCATGTCGGAAGGACCCACAATAACGACTACCGTCACCTAAAATTTTAGCGATTTTTCAAAAGAAGTTTATTTTTTATTGAATTTTAGGTAAATTTTTAGATCGTTTTAGGTTTTTCAGCTATTTTCAAAGATTCTTTTTCGAATTGCCGGGTTTTTTTGTATGAAATTTGATGGAACGTTGTTTTACTGAGGATTACTGTAGAAACCTAATTTCCTTTTTCGTATTTTTTTTGCAAACACAATCACGTCAAAGTGCAGATAAAAACTGATTTGTTGTCTGAAAAAAAACTACAAAATACAAGGTTTCCTACAGTAATCTACAGTAATCTTCTGTCAAGAACACCCTAATTTCAGACAAAAAAGCCGGAAAACCGAAAAAGAATCTTCAAAAATAGATGAAAAACCTAAAAAGGTCTAAAAATTTTGCAAAAAATCGGAGAAAATTTTCTCGTTTCCCTCAAAAACCAAACAACTTTTATTTTAATACAGATCACATTCTCATTCCAATTTCGAATTCTCAAATGAAATTAGTTCTGGCAGTTTCCATATACATATTCACTTGTCATTCCCGCTGCGTCAGTCCAATTGCACCGTTTCAAAAAAAGCTCAATGAGCATTTTCTTTCGAAACAGGAGGGGACGGGACGAAAAAGAAGGAGGAGGAAAAGAGACATTCTCTAATTGACTTGTTATGTCTCAAGAGGAGTCTGGTAGAAGAAAGCAATAGAAGTGGAAGACTA</canonical>
            <polymorphic>CTGAACTAGATTTTCCAAAAACTGGGAGGCTTCAGTCAAGTATTCCATCTCCAAATCACTATGCCTAGTTGCGGTCCGTTTGGACAGCGTCAACCGAAATTTTGGGCAAATTCGTAGTTTTCGGCTACACGGAAACTCTGCTCGTTATCTGGTTTTGAATAGAAAATTTCAGAAAACTGTAAAAATTTGAATATCGTAGTTGTGACGATCCATATCGGTAATCTACAAAAAAATCGGAGCGGTGGGAAAATCGACGGTGGCCATGTCGGAAGGACCCACAATAACGACTACCGTCACCTAAAATTTTAGCGATTTTTCAAAAGAAGTTTATTTTTTATTGAATTTTAGGTAAATTTTTAGATCGTTTTAGGTTTTTCAGCTATTTTCAAAGATTCTTTTTCGAATTGCCGGGTTTTTTTGTATGAAATTTGATGGAACGTTGTTTTACTGAGGATTACTGTAGAAACCTAATTTCCTTTTTCGTATTTTTTTTGCAAACRCAATCACGTCAAAGTGCAGATAAAAACTGATTTGTTGTCTGAAAAAAAACTACAAAATACAAGGTTTCCTACAGTAATCTACAGTAATCTTCTGTCAAGAACACCCTAATTTCAGACAAAAAAGCCGGAAAACCGAAAAAGAATCTTCAAAAATAGATGAAAAACCTAAAAAGGTCTAAAAATTTTGCAAAAAATCGGAGAAAATTTTCTCGTTTCCCTCAAAAACCAAACAACTTTTATTTTAATACAGATCACATTCTCATTCCAATTTCGAATTCTCAAATGAAATTAGTTCTGGCAGTTTCCATATACATATTCACTTGTCATTCCCGCTGCGTCAGTCCAATTGCACCGTTTCAAAAAAAGCTCAATGAGCATTTTCTTTCGAAACAGGAGGGGACGGGACGAAAAAGAAGGAGGAGGAAAAGAGACATTCTCTAATTGACTTGTTATGTCTCAAGAGGAGTCTGGTAGAAGAAAGCAATAGAAGTGGAAGACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>204 151 141 87 75 71 65 58 40 32 19 18 15 10 8 6</canonical_bands>
                <polymorphic_bands>210 151 141 87 75 71 65 58 40 32 19 18 15 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACGATCCATATCGGTAATCTA</pcr_primer_p1>
		<pcr_primer_p2>GTTTGGTTTTTGAGGGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>528</pcr_amplicon_size>
		<canonical_amplicon>GACGATCCATATCGGTAATCTACAAAAAAATCGGAGCGGTGGGAAAATCGACGGTGGCCATGTCGGAAGGACCCACAATAACGACTACCGTCACCTAAAATTTTAGCGATTTTTCAAAAGAAGTTTATTTTTTATTGAATTTTAGGTAAATTTTTAGATCGTTTTAGGTTTTTCAGCTATTTTCAAAGATTCTTTTTCGAATTGCCGGGTTTTTTTGTATGAAATTTGATGGAACGTTGTTTTACTGAGGATTACTGTAGAAACCTAATTTCCTTTTTCGTATTTTTTTTGCAAACACAATCACGTCAAAGTGCAGATAAAAACTGATTTGTTGTCTGAAAAAAAACTACAAAATACAAGGTTTCCTACAGTAATCTACAGTAATCTTCTGTCAAGAACACCCTAATTTCAGACAAAAAAGCCGGAAAACCGAAAAAGAATCTTCAAAAATAGATGAAAAACCTAAAAAGGTCTAAAAATTTTGCAAAAAATCGGAGAAAATTTTCTCGTTTCCCTCAAAAACCAAAC</canonical_amplicon>
		<polymorphic_amplicon>GACGATCCATATCGGTAATCTACAAAAAAATCGGAGCGGTGGGAAAATCGACGGTGGCCATGTCGGAAGGACCCACAATAACGACTACCGTCACCTAAAATTTTAGCGATTTTTCAAAAGAAGTTTATTTTTTATTGAATTTTAGGTAAATTTTTAGATCGTTTTAGGTTTTTCAGCTATTTTCAAAGATTCTTTTTCGAATTGCCGGGTTTTTTTGTATGAAATTTGATGGAACGTTGTTTTACTGAGGATTACTGTAGAAACCTAATTTCCTTTTTCGTATTTTTTTTGCAAACRCAATCACGTCAAAGTGCAGATAAAAACTGATTTGTTGTCTGAAAAAAAACTACAAAATACAAGGTTTCCTACAGTAATCTACAGTAATCTTCTGTCAAGAACACCCTAATTTCAGACAAAAAAGCCGGAAAACCGAAAAAGAATCTTCAAAAATAGATGAAAAACCTAAAAAGGTCTAAAAATTTTGCAAAAAATCGGAGAAAATTTTCTCGTTTCCCTCAAAAACCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26042</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>163852</contig_pos>
        <strand></strand>
        <context>tcacgtcaaa[G/A]tgcagataaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAACCTAATTTCCTTTTTCGTATTTTTTTTGCAAACACAATCACGTCAAA</left_flank>
        <right_flank>TGCAGATAAAAACTGATTTGTTGTCTGAAAAAAAACTACAAAATACAAGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAAAACTGGGAGGCTTCAGTCAAGTATTCCATCTCCAAATCACTATGCCTAGTTGCGGTCCGTTTGGACAGCGTCAACCGAAATTTTGGGCAAATTCGTAGTTTTCGGCTACACGGAAACTCTGCTCGTTATCTGGTTTTGAATAGAAAATTTCAGAAAACTGTAAAAATTTGAATATCGTAGTTGTGACGATCCATATCGGTAATCTACAAAAAAATCGGAGCGGTGGGAAAATCGACGGTGGCCATGTCGGAAGGACCCACAATAACGACTACCGTCACCTAAAATTTTAGCGATTTTTCAAAAGAAGTTTATTTTTTATTGAATTTTAGGTAAATTTTTAGATCGTTTTAGGTTTTTCAGCTATTTTCAAAGATTCTTTTTCGAATTGCCGGGTTTTTTTGTATGAAATTTGATGGAACGTTGTTTTACTGAGGATTACTGTAGAAACCTAATTTCCTTTTTCGTATTTTTTTTGCAAACACAATCACGTCAAAGTGCAGATAAAAACTGATTTGTTGTCTGAAAAAAAACTACAAAATACAAGGTTTCCTACAGTAATCTACAGTAATCTTCTGTCAAGAACACCCTAATTTCAGACAAAAAAGCCGGAAAACCGAAAAAGAATCTTCAAAAATAGATGAAAAACCTAAAAAGGTCTAAAAATTTTGCAAAAAATCGGAGAAAATTTTCTCGTTTCCCTCAAAAACCAAACAACTTTTATTTTAATACAGATCACATTCTCATTCCAATTTCGAATTCTCAAATGAAATTAGTTCTGGCAGTTTCCATATACATATTCACTTGTCATTCCCGCTGCGTCAGTCCAATTGCACCGTTTCAAAAAAAGCTCAATGAGCATTTTCTTTCGAAACAGGAGGGGACGGGACGAAAAAGAAGGAGGAGGAAAAGAGACATTCTCTAATTGACTTGTTATGTCTCAAGAGGAGTCTGGTAGAAGAAAGCAATAGAAGTGGAAGACTAAGCTCCGTAGTCGT</canonical>
            <polymorphic>CCAAAAACTGGGAGGCTTCAGTCAAGTATTCCATCTCCAAATCACTATGCCTAGTTGCGGTCCGTTTGGACAGCGTCAACCGAAATTTTGGGCAAATTCGTAGTTTTCGGCTACACGGAAACTCTGCTCGTTATCTGGTTTTGAATAGAAAATTTCAGAAAACTGTAAAAATTTGAATATCGTAGTTGTGACGATCCATATCGGTAATCTACAAAAAAATCGGAGCGGTGGGAAAATCGACGGTGGCCATGTCGGAAGGACCCACAATAACGACTACCGTCACCTAAAATTTTAGCGATTTTTCAAAAGAAGTTTATTTTTTATTGAATTTTAGGTAAATTTTTAGATCGTTTTAGGTTTTTCAGCTATTTTCAAAGATTCTTTTTCGAATTGCCGGGTTTTTTTGTATGAAATTTGATGGAACGTTGTTTTACTGAGGATTACTGTAGAAACCTAATTTCCTTTTTCGTATTTTTTTTGCAAACACAATCACGTCAAARTGCAGATAAAAACTGATTTGTTGTCTGAAAAAAAACTACAAAATACAAGGTTTCCTACAGTAATCTACAGTAATCTTCTGTCAAGAACACCCTAATTTCAGACAAAAAAGCCGGAAAACCGAAAAAGAATCTTCAAAAATAGATGAAAAACCTAAAAAGGTCTAAAAATTTTGCAAAAAATCGGAGAAAATTTTCTCGTTTCCCTCAAAAACCAAACAACTTTTATTTTAATACAGATCACATTCTCATTCCAATTTCGAATTCTCAAATGAAATTAGTTCTGGCAGTTTCCATATACATATTCACTTGTCATTCCCGCTGCGTCAGTCCAATTGCACCGTTTCAAAAAAAGCTCAATGAGCATTTTCTTTCGAAACAGGAGGGGACGGGACGAAAAAGAAGGAGGAGGAAAAGAGACATTCTCTAATTGACTTGTTATGTCTCAAGAGGAGTCTGGTAGAAGAAAGCAATAGAAGTGGAAGACTAAGCTCCGTAGTCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>204 151 141 87 75 71 65 44 40 32 22 19 18 15 10 6</canonical_bands>
                <polymorphic_bands>204 151 141 97 75 71 65 44 40 32 22 19 18 15 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACGATCCATATCGGTAATCTA</pcr_primer_p1>
		<pcr_primer_p2>GTTTGGTTTTTGAGGGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>528</pcr_amplicon_size>
		<canonical_amplicon>GACGATCCATATCGGTAATCTACAAAAAAATCGGAGCGGTGGGAAAATCGACGGTGGCCATGTCGGAAGGACCCACAATAACGACTACCGTCACCTAAAATTTTAGCGATTTTTCAAAAGAAGTTTATTTTTTATTGAATTTTAGGTAAATTTTTAGATCGTTTTAGGTTTTTCAGCTATTTTCAAAGATTCTTTTTCGAATTGCCGGGTTTTTTTGTATGAAATTTGATGGAACGTTGTTTTACTGAGGATTACTGTAGAAACCTAATTTCCTTTTTCGTATTTTTTTTGCAAACACAATCACGTCAAAGTGCAGATAAAAACTGATTTGTTGTCTGAAAAAAAACTACAAAATACAAGGTTTCCTACAGTAATCTACAGTAATCTTCTGTCAAGAACACCCTAATTTCAGACAAAAAAGCCGGAAAACCGAAAAAGAATCTTCAAAAATAGATGAAAAACCTAAAAAGGTCTAAAAATTTTGCAAAAAATCGGAGAAAATTTTCTCGTTTCCCTCAAAAACCAAAC</canonical_amplicon>
		<polymorphic_amplicon>GACGATCCATATCGGTAATCTACAAAAAAATCGGAGCGGTGGGAAAATCGACGGTGGCCATGTCGGAAGGACCCACAATAACGACTACCGTCACCTAAAATTTTAGCGATTTTTCAAAAGAAGTTTATTTTTTATTGAATTTTAGGTAAATTTTTAGATCGTTTTAGGTTTTTCAGCTATTTTCAAAGATTCTTTTTCGAATTGCCGGGTTTTTTTGTATGAAATTTGATGGAACGTTGTTTTACTGAGGATTACTGTAGAAACCTAATTTCCTTTTTCGTATTTTTTTTGCAAACACAATCACGTCAAARTGCAGATAAAAACTGATTTGTTGTCTGAAAAAAAACTACAAAATACAAGGTTTCCTACAGTAATCTACAGTAATCTTCTGTCAAGAACACCCTAATTTCAGACAAAAAAGCCGGAAAACCGAAAAAGAATCTTCAAAAATAGATGAAAAACCTAAAAAGGTCTAAAAATTTTGCAAAAAATCGGAGAAAATTTTCTCGTTTCCCTCAAAAACCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26043</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>163966</contig_pos>
        <strand></strand>
        <context>aaaaaagccg[G/A]aaaaccgaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCTACAGTAATCTTCTGTCAAGAACACCCTAATTTCAGACAAAAAAGCCG</left_flank>
        <right_flank>AAAACCGAAAAAGAATCTTCAAAAATAGATGAAAAACCTAAAAAGGTCTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGGAAACTCTGCTCGTTATCTGGTTTTGAATAGAAAATTTCAGAAAACTGTAAAAATTTGAATATCGTAGTTGTGACGATCCATATCGGTAATCTACAAAAAAATCGGAGCGGTGGGAAAATCGACGGTGGCCATGTCGGAAGGACCCACAATAACGACTACCGTCACCTAAAATTTTAGCGATTTTTCAAAAGAAGTTTATTTTTTATTGAATTTTAGGTAAATTTTTAGATCGTTTTAGGTTTTTCAGCTATTTTCAAAGATTCTTTTTCGAATTGCCGGGTTTTTTTGTATGAAATTTGATGGAACGTTGTTTTACTGAGGATTACTGTAGAAACCTAATTTCCTTTTTCGTATTTTTTTTGCAAACACAATCACGTCAAAGTGCAGATAAAAACTGATTTGTTGTCTGAAAAAAAACTACAAAATACAAGGTTTCCTACAGTAATCTACAGTAATCTTCTGTCAAGAACACCCTAATTTCAGACAAAAAAGCCGGAAAACCGAAAAAGAATCTTCAAAAATAGATGAAAAACCTAAAAAGGTCTAAAAATTTTGCAAAAAATCGGAGAAAATTTTCTCGTTTCCCTCAAAAACCAAACAACTTTTATTTTAATACAGATCACATTCTCATTCCAATTTCGAATTCTCAAATGAAATTAGTTCTGGCAGTTTCCATATACATATTCACTTGTCATTCCCGCTGCGTCAGTCCAATTGCACCGTTTCAAAAAAAGCTCAATGAGCATTTTCTTTCGAAACAGGAGGGGACGGGACGAAAAAGAAGGAGGAGGAAAAGAGACATTCTCTAATTGACTTGTTATGTCTCAAGAGGAGTCTGGTAGAAGAAAGCAATAGAAGTGGAAGACTAAGCTCCGTAGTCGTTACTGACAAGTTTAAGGTCAATTCTATTTTCATTCCTCCCATTCGACTTCCAATTAATTTCTTCCTCTCTTGCTCTCCACCCACATTCTTTTTTTTCTGATGCTTCTTGGTAGA</canonical>
            <polymorphic>ACGGAAACTCTGCTCGTTATCTGGTTTTGAATAGAAAATTTCAGAAAACTGTAAAAATTTGAATATCGTAGTTGTGACGATCCATATCGGTAATCTACAAAAAAATCGGAGCGGTGGGAAAATCGACGGTGGCCATGTCGGAAGGACCCACAATAACGACTACCGTCACCTAAAATTTTAGCGATTTTTCAAAAGAAGTTTATTTTTTATTGAATTTTAGGTAAATTTTTAGATCGTTTTAGGTTTTTCAGCTATTTTCAAAGATTCTTTTTCGAATTGCCGGGTTTTTTTGTATGAAATTTGATGGAACGTTGTTTTACTGAGGATTACTGTAGAAACCTAATTTCCTTTTTCGTATTTTTTTTGCAAACACAATCACGTCAAAGTGCAGATAAAAACTGATTTGTTGTCTGAAAAAAAACTACAAAATACAAGGTTTCCTACAGTAATCTACAGTAATCTTCTGTCAAGAACACCCTAATTTCAGACAAAAAAGCCGRAAAACCGAAAAAGAATCTTCAAAAATAGATGAAAAACCTAAAAAGGTCTAAAAATTTTGCAAAAAATCGGAGAAAATTTTCTCGTTTCCCTCAAAAACCAAACAACTTTTATTTTAATACAGATCACATTCTCATTCCAATTTCGAATTCTCAAATGAAATTAGTTCTGGCAGTTTCCATATACATATTCACTTGTCATTCCCGCTGCGTCAGTCCAATTGCACCGTTTCAAAAAAAGCTCAATGAGCATTTTCTTTCGAAACAGGAGGGGACGGGACGAAAAAGAAGGAGGAGGAAAAGAGACATTCTCTAATTGACTTGTTATGTCTCAAGAGGAGTCTGGTAGAAGAAAGCAATAGAAGTGGAAGACTAAGCTCCGTAGTCGTTACTGACAAGTTTAAGGTCAATTCTATTTTCATTCCTCCCATTCGACTTCCAATTAATTTCTTCCTCTCTTGCTCTCCACCCACATTCTTTTTTTTCTGATGCTTCTTGGTAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 280 217</canonical_bands>
                <polymorphic_bands>720 280</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACGATCCATATCGGTAATCTA</pcr_primer_p1>
		<pcr_primer_p2>GTTTGGTTTTTGAGGGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>528</pcr_amplicon_size>
		<canonical_amplicon>GACGATCCATATCGGTAATCTACAAAAAAATCGGAGCGGTGGGAAAATCGACGGTGGCCATGTCGGAAGGACCCACAATAACGACTACCGTCACCTAAAATTTTAGCGATTTTTCAAAAGAAGTTTATTTTTTATTGAATTTTAGGTAAATTTTTAGATCGTTTTAGGTTTTTCAGCTATTTTCAAAGATTCTTTTTCGAATTGCCGGGTTTTTTTGTATGAAATTTGATGGAACGTTGTTTTACTGAGGATTACTGTAGAAACCTAATTTCCTTTTTCGTATTTTTTTTGCAAACACAATCACGTCAAAGTGCAGATAAAAACTGATTTGTTGTCTGAAAAAAAACTACAAAATACAAGGTTTCCTACAGTAATCTACAGTAATCTTCTGTCAAGAACACCCTAATTTCAGACAAAAAAGCCGGAAAACCGAAAAAGAATCTTCAAAAATAGATGAAAAACCTAAAAAGGTCTAAAAATTTTGCAAAAAATCGGAGAAAATTTTCTCGTTTCCCTCAAAAACCAAAC</canonical_amplicon>
		<polymorphic_amplicon>GACGATCCATATCGGTAATCTACAAAAAAATCGGAGCGGTGGGAAAATCGACGGTGGCCATGTCGGAAGGACCCACAATAACGACTACCGTCACCTAAAATTTTAGCGATTTTTCAAAAGAAGTTTATTTTTTATTGAATTTTAGGTAAATTTTTAGATCGTTTTAGGTTTTTCAGCTATTTTCAAAGATTCTTTTTCGAATTGCCGGGTTTTTTTGTATGAAATTTGATGGAACGTTGTTTTACTGAGGATTACTGTAGAAACCTAATTTCCTTTTTCGTATTTTTTTTGCAAACACAATCACGTCAAAGTGCAGATAAAAACTGATTTGTTGTCTGAAAAAAAACTACAAAATACAAGGTTTCCTACAGTAATCTACAGTAATCTTCTGTCAAGAACACCCTAATTTCAGACAAAAAAGCCGRAAAACCGAAAAAGAATCTTCAAAAATAGATGAAAAACCTAAAAAGGTCTAAAAATTTTGCAAAAAATCGGAGAAAATTTTCTCGTTTCCCTCAAAAACCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26044</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>167339</contig_pos>
        <strand></strand>
        <context>tctttcacag[G/A]aatcgagata</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTTATATAATTAAACAATTTATCAGTTGACAACTTTTTCATCTTTCACAG</left_flank>
        <right_flank>AATCGAGATAAATGAGCTAGAAGTTAAAAGTTAGTGTGCCCTTCTATTAG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTCTGGTTATTTTTCACAGGATAGTTGTAACTCGTGTTCCATTTTTAGAACGCTGGAAACGCCCGAAGGGGCCTAGAGAGTGACTGTAATTTTTTAAACATCTTTCTCTGAAAGTACATATTTAAACTGTCAGAGACTAATCTGAGTTTCATTTTTGAGTTTTTTTGCATTTAGTATTTTTTAAAATTTATTTGCTATAACTTTCAACGGAAAGTTTTGGTTCCAGACTGTGTGATATTACATAAAAAGTTTTCATAGAGATTAAGAAATGCCCATTCAATTCTAGAAGCTCAAAAAACTACGAAAGTATACCGTAAAATCTGTAACACAAGGGCTTCACACTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATATCAAACATTTGTCAACTCAAAAAACACTTTTGATAGTATCAAAAGTGTTATTATCTCTTTTGGTTATATAATTAAACAATTTATCAGTTGACAACTTTTTCATCTTTCACAGGAATCGAGATAAATGAGCTAGAAGTTAAAAGTTAGTGTGCCCTTCTATTAGAGGCTTCACGGTAAGTGGGAATTTTCAAATGTATGATCCTAGTTGCACTTTGACGACGTCAACCTGCAAGGAAAAAACCTTCCCACTCTTTTCAATTTCTGATCTGGATGTGGATTTGCCTTTAATTTTCAACTTTTTAAATTTTCTTGATATCATTCTCAGAAATTCCTTCTTAAACAAAAACGAAGAAGAACACCAAATCATGCTGGGGATTAGTTTTTGCTCCAGATTTTGTTGGTACAAAAAAATGTAGCTTGTGTTTTAGCAGGATGATACAAACTTTAAAAAATATCATATGTCATGTGTTCATATAATTGAGTTTTTTTTGGATTTGAATACCCTAACAACTGTATTAGAAGTGCCCGCTCTTCTATTATGGGGGCCCTTCAATTAGAGGAGCCTTTCTTTTTGAAACATTTTCATAAAAAATTTGTGGTTCTCAATTCAAAA</canonical>
            <polymorphic>TTTTTCTGGTTATTTTTCACAGGATAGTTGTAACTCGTGTTCCATTTTTAGAACGCTGGAAACGCCCGAAGGGGCCTAGAGAGTGACTGTAATTTTTTAAACATCTTTCTCTGAAAGTACATATTTAAACTGTCAGAGACTAATCTGAGTTTCATTTTTGAGTTTTTTTGCATTTAGTATTTTTTAAAATTTATTTGCTATAACTTTCAACGGAAAGTTTTGGTTCCAGACTGTGTGATATTACATAAAAAGTTTTCATAGAGATTAAGAAATGCCCATTCAATTCTAGAAGCTCAAAAAACTACGAAAGTATACCGTAAAATCTGTAACACAAGGGCTTCACACTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATATCAAACATTTGTCAACTCAAAAAACACTTTTGATAGTATCAAAAGTGTTATTATCTCTTTTGGTTATATAATTAAACAATTTATCAGTTGACAACTTTTTCATCTTTCACAGRAATCGAGATAAATGAGCTAGAAGTTAAAAGTTAGTGTGCCCTTCTATTAGAGGCTTCACGGTAAGTGGGAATTTTCAAATGTATGATCCTAGTTGCACTTTGACGACGTCAACCTGCAAGGAAAAAACCTTCCCACTCTTTTCAATTTCTGATCTGGATGTGGATTTGCCTTTAATTTTCAACTTTTTAAATTTTCTTGATATCATTCTCAGAAATTCCTTCTTAAACAAAAACGAAGAAGAACACCAAATCATGCTGGGGATTAGTTTTTGCTCCAGATTTTGTTGGTACAAAAAAATGTAGCTTGTGTTTTAGCAGGATGATACAAACTTTAAAAAATATCATATGTCATGTGTTCATATAATTGAGTTTTTTTTGGATTTGAATACCCTAACAACTGTATTAGAAGTGCCCGCTCTTCTATTATGGGGGCCCTTCAATTAGAGGAGCCTTTCTTTTTGAAACATTTTCATAAAAAATTTGTGGTTCTCAATTCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTCAATTCTAGAAGCTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATACATTTGAAAATTCCCACTT</pcr_primer_p2>
		<pcr_amplicon_size>308</pcr_amplicon_size>
		<canonical_amplicon>CATTCAATTCTAGAAGCTCAAAAAACTACGAAAGTATACCGTAAAATCTGTAACACAAGGGCTTCACACTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATATCAAACATTTGTCAACTCAAAAAACACTTTTGATAGTATCAAAAGTGTTATTATCTCTTTTGGTTATATAATTAAACAATTTATCAGTTGACAACTTTTTCATCTTTCACAGGAATCGAGATAAATGAGCTAGAAGTTAAAAGTTAGTGTGCCCTTCTATTAGAGGCTTCACGGTAAGTGGGAATTTTCAAATGTAT</canonical_amplicon>
		<polymorphic_amplicon>CATTCAATTCTAGAAGCTCAAAAAACTACGAAAGTATACCGTAAAATCTGTAACACAAGGGCTTCACACTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATATCAAACATTTGTCAACTCAAAAAACACTTTTGATAGTATCAAAAGTGTTATTATCTCTTTTGGTTATATAATTAAACAATTTATCAGTTGACAACTTTTTCATCTTTCACAGRAATCGAGATAAATGAGCTAGAAGTTAAAAGTTAGTGTGCCCTTCTATTAGAGGCTTCACGGTAAGTGGGAATTTTCAAATGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26045</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>167392</contig_pos>
        <strand></strand>
        <context>tctattagag[G/A]cttcacggtA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCGAGATAAATGAGCTAGAAGTTAAAAGTTAGTGTGCCCTTCTATTAGAG</left_flank>
        <right_flank>CTTCACGGTAAGTGGGAATTTTCAAATGTATGATCCTAGTTGCACTTTGA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCTGGAAACGCCCGAAGGGGCCTAGAGAGTGACTGTAATTTTTTAAACATCTTTCTCTGAAAGTACATATTTAAACTGTCAGAGACTAATCTGAGTTTCATTTTTGAGTTTTTTTGCATTTAGTATTTTTTAAAATTTATTTGCTATAACTTTCAACGGAAAGTTTTGGTTCCAGACTGTGTGATATTACATAAAAAGTTTTCATAGAGATTAAGAAATGCCCATTCAATTCTAGAAGCTCAAAAAACTACGAAAGTATACCGTAAAATCTGTAACACAAGGGCTTCACACTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATATCAAACATTTGTCAACTCAAAAAACACTTTTGATAGTATCAAAAGTGTTATTATCTCTTTTGGTTATATAATTAAACAATTTATCAGTTGACAACTTTTTCATCTTTCACAGGAATCGAGATAAATGAGCTAGAAGTTAAAAGTTAGTGTGCCCTTCTATTAGAGGCTTCACGGTAAGTGGGAATTTTCAAATGTATGATCCTAGTTGCACTTTGACGACGTCAACCTGCAAGGAAAAAACCTTCCCACTCTTTTCAATTTCTGATCTGGATGTGGATTTGCCTTTAATTTTCAACTTTTTAAATTTTCTTGATATCATTCTCAGAAATTCCTTCTTAAACAAAAACGAAGAAGAACACCAAATCATGCTGGGGATTAGTTTTTGCTCCAGATTTTGTTGGTACAAAAAAATGTAGCTTGTGTTTTAGCAGGATGATACAAACTTTAAAAAATATCATATGTCATGTGTTCATATAATTGAGTTTTTTTTGGATTTGAATACCCTAACAACTGTATTAGAAGTGCCCGCTCTTCTATTATGGGGGCCCTTCAATTAGAGGAGCCTTTCTTTTTGAAACATTTTCATAAAAAATTTGTGGTTCTCAATTCAAAACTTATGAAAATTTGTCAATTTCCCCCATATATTAAGATACTTTTTTTAGCAAA</canonical>
            <polymorphic>CGCTGGAAACGCCCGAAGGGGCCTAGAGAGTGACTGTAATTTTTTAAACATCTTTCTCTGAAAGTACATATTTAAACTGTCAGAGACTAATCTGAGTTTCATTTTTGAGTTTTTTTGCATTTAGTATTTTTTAAAATTTATTTGCTATAACTTTCAACGGAAAGTTTTGGTTCCAGACTGTGTGATATTACATAAAAAGTTTTCATAGAGATTAAGAAATGCCCATTCAATTCTAGAAGCTCAAAAAACTACGAAAGTATACCGTAAAATCTGTAACACAAGGGCTTCACACTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATATCAAACATTTGTCAACTCAAAAAACACTTTTGATAGTATCAAAAGTGTTATTATCTCTTTTGGTTATATAATTAAACAATTTATCAGTTGACAACTTTTTCATCTTTCACAGGAATCGAGATAAATGAGCTAGAAGTTAAAAGTTAGTGTGCCCTTCTATTAGAGRCTTCACGGTAAGTGGGAATTTTCAAATGTATGATCCTAGTTGCACTTTGACGACGTCAACCTGCAAGGAAAAAACCTTCCCACTCTTTTCAATTTCTGATCTGGATGTGGATTTGCCTTTAATTTTCAACTTTTTAAATTTTCTTGATATCATTCTCAGAAATTCCTTCTTAAACAAAAACGAAGAAGAACACCAAATCATGCTGGGGATTAGTTTTTGCTCCAGATTTTGTTGGTACAAAAAAATGTAGCTTGTGTTTTAGCAGGATGATACAAACTTTAAAAAATATCATATGTCATGTGTTCATATAATTGAGTTTTTTTTGGATTTGAATACCCTAACAACTGTATTAGAAGTGCCCGCTCTTCTATTATGGGGGCCCTTCAATTAGAGGAGCCTTTCTTTTTGAAACATTTTCATAAAAAATTTGTGGTTCTCAATTCAAAACTTATGAAAATTTGTCAATTTCCCCCATATATTAAGATACTTTTTTTAGCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>250 218 158 129 104 45 37 21 21 17</canonical_bands>
                <polymorphic_bands>287 218 158 129 104 45 21 21 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTCAATTCTAGAAGCTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>CGTCAAAGTGCAACTAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>329</pcr_amplicon_size>
		<canonical_amplicon>CATTCAATTCTAGAAGCTCAAAAAACTACGAAAGTATACCGTAAAATCTGTAACACAAGGGCTTCACACTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATATCAAACATTTGTCAACTCAAAAAACACTTTTGATAGTATCAAAAGTGTTATTATCTCTTTTGGTTATATAATTAAACAATTTATCAGTTGACAACTTTTTCATCTTTCACAGGAATCGAGATAAATGAGCTAGAAGTTAAAAGTTAGTGTGCCCTTCTATTAGAGGCTTCACGGTAAGTGGGAATTTTCAAATGTATGATCCTAGTTGCACTTTGACG</canonical_amplicon>
		<polymorphic_amplicon>CATTCAATTCTAGAAGCTCAAAAAACTACGAAAGTATACCGTAAAATCTGTAACACAAGGGCTTCACACTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATATCAAACATTTGTCAACTCAAAAAACACTTTTGATAGTATCAAAAGTGTTATTATCTCTTTTGGTTATATAATTAAACAATTTATCAGTTGACAACTTTTTCATCTTTCACAGGAATCGAGATAAATGAGCTAGAAGTTAAAAGTTAGTGTGCCCTTCTATTAGAGRCTTCACGGTAAGTGGGAATTTTCAAATGTATGATCCTAGTTGCACTTTGACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26046</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>167709</contig_pos>
        <strand>+</strand>
        <context>TATAATTGAG[G/T]TTTTTTTGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGATACAAACTTTAAAAAATATCATATGTCATGTGTTCATATAATTGAG</left_flank>
        <right_flank>TTTTTTTGGATTTGAATACCCTAACAACTGTATTAGAAGTGCCCGCTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCCTATGCAAGATATCAAACATTTGTCAACTCAAAAAACACTTTTGATAGTATCAAAAGTGTTATTATCTCTTTTGGTTATATAATTAAACAATTTATCAGTTGACAACTTTTTCATCTTTCACAGGAATCGAGATAAATGAGCTAGAAGTTAAAAGTTAGTGTGCCCTTCTATTAGAGGCTTCACGGTAAGTGGGAATTTTCAAATGTATGATCCTAGTTGCACTTTGACGACGTCAACCTGCAAGGAAAAAACCTTCCCACTCTTTTCAATTTCTGATCTGGATGTGGATTTGCCTTTAATTTTCAACTTTTTAAATTTTCTTGATATCATTCTCAGAAATTCCTTCTTAAACAAAAACGAAGAAGAACACCAAATCATGCTGGGGATTAGTTTTTGCTCCAGATTTTGTTGGTACAAAAAAATGTAGCTTGTGTTTTAGCAGGATGATACAAACTTTAAAAAATATCATATGTCATGTGTTCATATAATTGAGTTTTTTTTGGATTTGAATACCCTAACAACTGTATTAGAAGTGCCCGCTCTTCTATTATGGGGGCCCTTCAATTAGAGGAGCCTTTCTTTTTGAAACATTTTCATAAAAAATTTGTGGTTCTCAATTCAAAACTTATGAAAATTTGTCAATTTCCCCCATATATTAAGATACTTTTTTTAGCAAAAAAAGAGTCTTTCAACTAATTTCTGTAGTTTTGAAATTTCCGGAATATTTGTAACTGAAAACGGTCAGAAGTTTTTAATTTAAAACAACACATATAGAAAGAGGCCTTTCTTTTCTTCACACCCTCTCTCGGAGGGCCTTCTATTAGAGGGACTCTCCTATTAAAGGAGCCCTTCTGATACAGGTTTTACGATATGTTGGAGTTACGTTAGACCGCGAAAAAAGACAATCTGTTCACGGTTTTTCCCGAATTCCTGTTTTCCTGCTTCTGCATTCAGAAATTTCCAGATTCTTCCTTCAAAATTCTGATCGTTGACA</canonical>
            <polymorphic>AATTCCTATGCAAGATATCAAACATTTGTCAACTCAAAAAACACTTTTGATAGTATCAAAAGTGTTATTATCTCTTTTGGTTATATAATTAAACAATTTATCAGTTGACAACTTTTTCATCTTTCACAGGAATCGAGATAAATGAGCTAGAAGTTAAAAGTTAGTGTGCCCTTCTATTAGAGGCTTCACGGTAAGTGGGAATTTTCAAATGTATGATCCTAGTTGCACTTTGACGACGTCAACCTGCAAGGAAAAAACCTTCCCACTCTTTTCAATTTCTGATCTGGATGTGGATTTGCCTTTAATTTTCAACTTTTTAAATTTTCTTGATATCATTCTCAGAAATTCCTTCTTAAACAAAAACGAAGAAGAACACCAAATCATGCTGGGGATTAGTTTTTGCTCCAGATTTTGTTGGTACAAAAAAATGTAGCTTGTGTTTTAGCAGGATGATACAAACTTTAAAAAATATCATATGTCATGTGTTCATATAATTGAGKTTTTTTTGGATTTGAATACCCTAACAACTGTATTAGAAGTGCCCGCTCTTCTATTATGGGGGCCCTTCAATTAGAGGAGCCTTTCTTTTTGAAACATTTTCATAAAAAATTTGTGGTTCTCAATTCAAAACTTATGAAAATTTGTCAATTTCCCCCATATATTAAGATACTTTTTTTAGCAAAAAAAGAGTCTTTCAACTAATTTCTGTAGTTTTGAAATTTCCGGAATATTTGTAACTGAAAACGGTCAGAAGTTTTTAATTTAAAACAACACATATAGAAAGAGGCCTTTCTTTTCTTCACACCCTCTCTCGGAGGGCCTTCTATTAGAGGGACTCTCCTATTAAAGGAGCCCTTCTGATACAGGTTTTACGATATGTTGGAGTTACGTTAGACCGCGAAAAAAGACAATCTGTTCACGGTTTTTCCCGAATTCCTGTTTTCCTGCTTCTGCATTCAGAAATTTCCAGATTCTTCCTTCAAAATTCTGATCGTTGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGTAGCTTGTGTTTTAGC</pcr_primer_p1>
		<pcr_primer_p2>ATCTTAATATATGGGGGAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGTAGCTTGTGTTTTAGCAGGATGATACAAACTTTAAAAAATATCATATGTCATGTGTTCATATAATTGAGTTTTTTTTGGATTTGAATACCCTAACAACTGTATTAGAAGTGCCCGCTCTTCTATTATGGGGGCCCTTCAATTAGAGGAGCCTTTCTTTTTGAAACATTTTCATAAAAAATTTGTGGTTCTCAATTCAAAACTTATGAAAATTTGTCAATTTCCCCCATATATTAAGAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGTAGCTTGTGTTTTAGCAGGATGATACAAACTTTAAAAAATATCATATGTCATGTGTTCATATAATTGAGKTTTTTTTGGATTTGAATACCCTAACAACTGTATTAGAAGTGCCCGCTCTTCTATTATGGGGGCCCTTCAATTAGAGGAGCCTTTCTTTTTGAAACATTTTCATAAAAAATTTGTGGTTCTCAATTCAAAACTTATGAAAATTTGTCAATTTCCCCCATATATTAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26047</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>167749</contig_pos>
        <strand></strand>
        <context>GTATTAGAAG[T/G]GCCCGCTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TATAATTGAGTTTTTTTTGGATTTGAATACCCTAACAACTGTATTAGAAG</left_flank>
        <right_flank>GCCCGCTCTTCTATTATGGGGGCCCTTCAATTAGAGGAGCCTTTCTTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACTTTTGATAGTATCAAAAGTGTTATTATCTCTTTTGGTTATATAATTAAACAATTTATCAGTTGACAACTTTTTCATCTTTCACAGGAATCGAGATAAATGAGCTAGAAGTTAAAAGTTAGTGTGCCCTTCTATTAGAGGCTTCACGGTAAGTGGGAATTTTCAAATGTATGATCCTAGTTGCACTTTGACGACGTCAACCTGCAAGGAAAAAACCTTCCCACTCTTTTCAATTTCTGATCTGGATGTGGATTTGCCTTTAATTTTCAACTTTTTAAATTTTCTTGATATCATTCTCAGAAATTCCTTCTTAAACAAAAACGAAGAAGAACACCAAATCATGCTGGGGATTAGTTTTTGCTCCAGATTTTGTTGGTACAAAAAAATGTAGCTTGTGTTTTAGCAGGATGATACAAACTTTAAAAAATATCATATGTCATGTGTTCATATAATTGAGTTTTTTTTGGATTTGAATACCCTAACAACTGTATTAGAAGTGCCCGCTCTTCTATTATGGGGGCCCTTCAATTAGAGGAGCCTTTCTTTTTGAAACATTTTCATAAAAAATTTGTGGTTCTCAATTCAAAACTTATGAAAATTTGTCAATTTCCCCCATATATTAAGATACTTTTTTTAGCAAAAAAAGAGTCTTTCAACTAATTTCTGTAGTTTTGAAATTTCCGGAATATTTGTAACTGAAAACGGTCAGAAGTTTTTAATTTAAAACAACACATATAGAAAGAGGCCTTTCTTTTCTTCACACCCTCTCTCGGAGGGCCTTCTATTAGAGGGACTCTCCTATTAAAGGAGCCCTTCTGATACAGGTTTTACGATATGTTGGAGTTACGTTAGACCGCGAAAAAAGACAATCTGTTCACGGTTTTTCCCGAATTCCTGTTTTCCTGCTTCTGCATTCAGAAATTTCCAGATTCTTCCTTCAAAATTCTGATCGTTGACACATTGTTCTATTTTCAGAGAATCTTCTCATCCGTCATTCT</canonical>
            <polymorphic>ACACTTTTGATAGTATCAAAAGTGTTATTATCTCTTTTGGTTATATAATTAAACAATTTATCAGTTGACAACTTTTTCATCTTTCACAGGAATCGAGATAAATGAGCTAGAAGTTAAAAGTTAGTGTGCCCTTCTATTAGAGGCTTCACGGTAAGTGGGAATTTTCAAATGTATGATCCTAGTTGCACTTTGACGACGTCAACCTGCAAGGAAAAAACCTTCCCACTCTTTTCAATTTCTGATCTGGATGTGGATTTGCCTTTAATTTTCAACTTTTTAAATTTTCTTGATATCATTCTCAGAAATTCCTTCTTAAACAAAAACGAAGAAGAACACCAAATCATGCTGGGGATTAGTTTTTGCTCCAGATTTTGTTGGTACAAAAAAATGTAGCTTGTGTTTTAGCAGGATGATACAAACTTTAAAAAATATCATATGTCATGTGTTCATATAATTGAGTTTTTTTTGGATTTGAATACCCTAACAACTGTATTAGAAGKGCCCGCTCTTCTATTATGGGGGCCCTTCAATTAGAGGAGCCTTTCTTTTTGAAACATTTTCATAAAAAATTTGTGGTTCTCAATTCAAAACTTATGAAAATTTGTCAATTTCCCCCATATATTAAGATACTTTTTTTAGCAAAAAAAGAGTCTTTCAACTAATTTCTGTAGTTTTGAAATTTCCGGAATATTTGTAACTGAAAACGGTCAGAAGTTTTTAATTTAAAACAACACATATAGAAAGAGGCCTTTCTTTTCTTCACACCCTCTCTCGGAGGGCCTTCTATTAGAGGGACTCTCCTATTAAAGGAGCCCTTCTGATACAGGTTTTACGATATGTTGGAGTTACGTTAGACCGCGAAAAAAGACAATCTGTTCACGGTTTTTCCCGAATTCCTGTTTTCCTGCTTCTGCATTCAGAAATTTCCAGATTCTTCCTTCAAAATTCTGATCGTTGACACATTGTTCTATTTTCAGAGAATCTTCTCATCCGTCATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>476 373 130 21</canonical_bands>
                <polymorphic_bands>476 394 130</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>373 290 186 130 21</canonical_bands>
                <polymorphic_bands>394 290 186 130</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>158 115 83 81 74 64 62 56 46 40 40 38 30 29 27 21 20 9 3 2 2</canonical_bands>
                <polymorphic_bands>158 130 115 83 81 64 62 46 40 40 38 30 29 27 21 20 9 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGTAGCTTGTGTTTTAGC</pcr_primer_p1>
		<pcr_primer_p2>ATCTTAATATATGGGGGAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGTAGCTTGTGTTTTAGCAGGATGATACAAACTTTAAAAAATATCATATGTCATGTGTTCATATAATTGAGTTTTTTTTGGATTTGAATACCCTAACAACTGTATTAGAAGTGCCCGCTCTTCTATTATGGGGGCCCTTCAATTAGAGGAGCCTTTCTTTTTGAAACATTTTCATAAAAAATTTGTGGTTCTCAATTCAAAACTTATGAAAATTTGTCAATTTCCCCCATATATTAAGAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGTAGCTTGTGTTTTAGCAGGATGATACAAACTTTAAAAAATATCATATGTCATGTGTTCATATAATTGAGTTTTTTTTGGATTTGAATACCCTAACAACTGTATTAGAAGKGCCCGCTCTTCTATTATGGGGGCCCTTCAATTAGAGGAGCCTTTCTTTTTGAAACATTTTCATAAAAAATTTGTGGTTCTCAATTCAAAACTTATGAAAATTTGTCAATTTCCCCCATATATTAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26048</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>167814</contig_pos>
        <strand>+</strand>
        <context>CATTTTCATM[A/C]AAAATTTGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATGGGGGCCCTTCAATTAGAGGAGCCTTTCTTTTTGAAACATTTTCATA</left_flank>
        <right_flank>AAAATTTGTGGTTCTCAATTCAAAACTTATGAAAATTTGTCAATTTCCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACAACTTTTTCATCTTTCACAGGAATCGAGATAAATGAGCTAGAAGTTAAAAGTTAGTGTGCCCTTCTATTAGAGGCTTCACGGTAAGTGGGAATTTTCAAATGTATGATCCTAGTTGCACTTTGACGACGTCAACCTGCAAGGAAAAAACCTTCCCACTCTTTTCAATTTCTGATCTGGATGTGGATTTGCCTTTAATTTTCAACTTTTTAAATTTTCTTGATATCATTCTCAGAAATTCCTTCTTAAACAAAAACGAAGAAGAACACCAAATCATGCTGGGGATTAGTTTTTGCTCCAGATTTTGTTGGTACAAAAAAATGTAGCTTGTGTTTTAGCAGGATGATACAAACTTTAAAAAATATCATATGTCATGTGTTCATATAATTGAGTTTTTTTTGGATTTGAATACCCTAACAACTGTATTAGAAGTGCCCGCTCTTCTATTATGGGGGCCCTTCAATTAGAGGAGCCTTTCTTTTTGAAACATTTTCATAAAAAATTTGTGGTTCTCAATTCAAAACTTATGAAAATTTGTCAATTTCCCCCATATATTAAGATACTTTTTTTAGCAAAAAAAGAGTCTTTCAACTAATTTCTGTAGTTTTGAAATTTCCGGAATATTTGTAACTGAAAACGGTCAGAAGTTTTTAATTTAAAACAACACATATAGAAAGAGGCCTTTCTTTTCTTCACACCCTCTCTCGGAGGGCCTTCTATTAGAGGGACTCTCCTATTAAAGGAGCCCTTCTGATACAGGTTTTACGATATGTTGGAGTTACGTTAGACCGCGAAAAAAGACAATCTGTTCACGGTTTTTCCCGAATTCCTGTTTTCCTGCTTCTGCATTCAGAAATTTCCAGATTCTTCCTTCAAAATTCTGATCGTTGACACATTGTTCTATTTTCAGAGAATCTTCTCATCCGTCATTCTCATCATCATCATTTCCATAATTTCTGCTCTCCAGACGGAACAAAAAGATTCCCTTTCTCTTTTTC</canonical>
            <polymorphic>TGACAACTTTTTCATCTTTCACAGGAATCGAGATAAATGAGCTAGAAGTTAAAAGTTAGTGTGCCCTTCTATTAGAGGCTTCACGGTAAGTGGGAATTTTCAAATGTATGATCCTAGTTGCACTTTGACGACGTCAACCTGCAAGGAAAAAACCTTCCCACTCTTTTCAATTTCTGATCTGGATGTGGATTTGCCTTTAATTTTCAACTTTTTAAATTTTCTTGATATCATTCTCAGAAATTCCTTCTTAAACAAAAACGAAGAAGAACACCAAATCATGCTGGGGATTAGTTTTTGCTCCAGATTTTGTTGGTACAAAAAAATGTAGCTTGTGTTTTAGCAGGATGATACAAACTTTAAAAAATATCATATGTCATGTGTTCATATAATTGAGTTTTTTTTGGATTTGAATACCCTAACAACTGTATTAGAAGTGCCCGCTCTTCTATTATGGGGGCCCTTCAATTAGAGGAGCCTTTCTTTTTGAAACATTTTCATAMAAAATTTGTGGTTCTCAATTCAAAACTTATGAAAATTTGTCAATTTCCCCCATATATTAAGATACTTTTTTTAGCAAAAAAAGAGTCTTTCAACTAATTTCTGTAGTTTTGAAATTTCCGGAATATTTGTAACTGAAAACGGTCAGAAGTTTTTAATTTAAAACAACACATATAGAAAGAGGCCTTTCTTTTCTTCACACCCTCTCTCGGAGGGCCTTCTATTAGAGGGACTCTCCTATTAAAGGAGCCCTTCTGATACAGGTTTTACGATATGTTGGAGTTACGTTAGACCGCGAAAAAAGACAATCTGTTCACGGTTTTTCCCGAATTCCTGTTTTCCTGCTTCTGCATTCAGAAATTTCCAGATTCTTCCTTCAAAATTCTGATCGTTGACACATTGTTCTATTTTCAGAGAATCTTCTCATCCGTCATTCTCATCATCATCATTTCCATAATTTCTGCTCTCCAGACGGAACAAAAAGATTCCCTTTCTCTTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGTAGCTTGTGTTTTAGC</pcr_primer_p1>
		<pcr_primer_p2>ATCTTAATATATGGGGGAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGTAGCTTGTGTTTTAGCAGGATGATACAAACTTTAAAAAATATCATATGTCATGTGTTCATATAATTGAGTTTTTTTTGGATTTGAATACCCTAACAACTGTATTAGAAGTGCCCGCTCTTCTATTATGGGGGCCCTTCAATTAGAGGAGCCTTTCTTTTTGAAACATTTTCATAAAAAATTTGTGGTTCTCAATTCAAAACTTATGAAAATTTGTCAATTTCCCCCATATATTAAGAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGTAGCTTGTGTTTTAGCAGGATGATACAAACTTTAAAAAATATCATATGTCATGTGTTCATATAATTGAGTTTTTTTTGGATTTGAATACCCTAACAACTGTATTAGAAGTGCCCGCTCTTCTATTATGGGGGCCCTTCAATTAGAGGAGCCTTTCTTTTTGAAACATTTTCATAMAAAATTTGTGGTTCTCAATTCAAAACTTATGAAAATTTGTCAATTTCCCCCATATATTAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26049</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>189424</contig_pos>
        <strand>+</strand>
        <context>AATTGTTTGG[A/T]ATTTCGAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTATTGGTCGAGCACAAACCTTTTCGGAAGTTAGGAAAATAATTGTTTGG</left_flank>
        <right_flank>ATTTCGAGTTATTGGATATTCTAGTTTTCAGATCCTGATGACATGGTTGG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAACATGTGTGCTGCTCCATTTTCCATTGTTTATCTCCCACACACCATCTCTGTCTGCAAGGGGATTGGAACATGGAAAATTACGCCTCACTGAACATTTATAATGAGCTTTCGGAGAAAGGACTCGACTCTCTAAAGACTGCTTTTTTGGCACATACAAAAGTCAAAATTTTCTAGTTTTGAGATTTTGATGACGTGGTTGAAACATCAGTTTTGGTGTTACGGTTCAGAAGCTTTGGTGAACACCGTAAACACTCTAGCCAACTTTGAGCCCTTATATCTACTTTCCTGTGAAAGATATTGAAAAATAGTCAACCGACAAAATGTTCATCACAATTAAAAAATATTTTTACAGCTGATTACTTTTTGATATCTTTTACAGGAATCGAGATAAATTAGCTCAAAGTGAACAGTCCGTGGGCATTCTATTAACGTATTTACGTTATATTTATTGGTCGAGCACAAACCTTTTCGGAAGTTAGGAAAATAATTGTTTGGTATTTCGAGTTATTGGATATTCTAGTTTTCAGATCCTGATGACATGGTTGGAACATCAGATTTGCTTTAACGGTTCAGAAGCTTTACCGTAAACTGTCTAATAGAACGCCCCAAACCGTCAACTTTGAACCCATATATCTCGTTTTCTGTAAAAGATATCAAGAAGTAGTCAACTAACAAAATGTTTATCATAATTTCAAAAATATTTTTTAACTGAGCGCATGTTTATAACTTTTACAAGAACCGAGATAAATTAGCTCAAAGTTGACTTATCGGAAGTTGGGTATACACATTTTTTCGGAATTTCAAATTATGGGAGCCCCGTTCCCCAAATTCTCTTTTCAACTTCTAATCAAAACTAAAATCTTAAAGACAGGATCCCGAACAGTGCTCGTGTGCCAATAGAACCTGACATCTTTTATACTGATATCAGAACCTCTAATGATCTTTTGAAGAACTCTAGAGTCAACAGATGCGATACAAAAAAAACACACTGTGACG</canonical>
            <polymorphic>GAAACATGTGTGCTGCTCCATTTTCCATTGTTTATCTCCCACACACCATCTCTGTCTGCAAGGGGATTGGAACATGGAAAATTACGCCTCACTGAACATTTATAATGAGCTTTCGGAGAAAGGACTCGACTCTCTAAAGACTGCTTTTTTGGCACATACAAAAGTCAAAATTTTCTAGTTTTGAGATTTTGATGACGTGGTTGAAACATCAGTTTTGGTGTTACGGTTCAGAAGCTTTGGTGAACACCGTAAACACTCTAGCCAACTTTGAGCCCTTATATCTACTTTCCTGTGAAAGATATTGAAAAATAGTCAACCGACAAAATGTTCATCACAATTAAAAAATATTTTTACAGCTGATTACTTTTTGATATCTTTTACAGGAATCGAGATAAATTAGCTCAAAGTGAACAGTCCGTGGGCATTCTATTAACGTATTTACGTTATATTTATTGGTCGAGCACAAACCTTTTCGGAAGTTAGGAAAATAATTGTTTGGWATTTCGAGTTATTGGATATTCTAGTTTTCAGATCCTGATGACATGGTTGGAACATCAGATTTGCTTTAACGGTTCAGAAGCTTTACCGTAAACTGTCTAATAGAACGCCCCAAACCGTCAACTTTGAACCCATATATCTCGTTTTCTGTAAAAGATATCAAGAAGTAGTCAACTAACAAAATGTTTATCATAATTTCAAAAATATTTTTTAACTGAGCGCATGTTTATAACTTTTACAAGAACCGAGATAAATTAGCTCAAAGTTGACTTATCGGAAGTTGGGTATACACATTTTTTCGGAATTTCAAATTATGGGAGCCCCGTTCCCCAAATTCTCTTTTCAACTTCTAATCAAAACTAAAATCTTAAAGACAGGATCCCGAACAGTGCTCGTGTGCCAATAGAACCTGACATCTTTTATACTGATATCAGAACCTCTAATGATCTTTTGAAGAACTCTAGAGTCAACAGATGCGATACAAAAAAAACACACTGTGACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGAACACCGTAAACACTC</pcr_primer_p1>
		<pcr_primer_p2>GATGTTCCAACCATGTCATC</pcr_primer_p2>
		<pcr_amplicon_size>318</pcr_amplicon_size>
		<canonical_amplicon>GGTGAACACCGTAAACACTCTAGCCAACTTTGAGCCCTTATATCTACTTTCCTGTGAAAGATATTGAAAAATAGTCAACCGACAAAATGTTCATCACAATTAAAAAATATTTTTACAGCTGATTACTTTTTGATATCTTTTACAGGAATCGAGATAAATTAGCTCAAAGTGAACAGTCCGTGGGCATTCTATTAACGTATTTACGTTATATTTATTGGTCGAGCACAAACCTTTTCGGAAGTTAGGAAAATAATTGTTTGGTATTTCGAGTTATTGGATATTCTAGTTTTCAGATCCTGATGACATGGTTGGAACATC</canonical_amplicon>
		<polymorphic_amplicon>GGTGAACACCGTAAACACTCTAGCCAACTTTGAGCCCTTATATCTACTTTCCTGTGAAAGATATTGAAAAATAGTCAACCGACAAAATGTTCATCACAATTAAAAAATATTTTTACAGCTGATTACTTTTTGATATCTTTTACAGGAATCGAGATAAATTAGCTCAAAGTGAACAGTCCGTGGGCATTCTATTAACGTATTTACGTTATATTTATTGGTCGAGCACAAACCTTTTCGGAAGTTAGGAAAATAATTGTTTGGWATTTCGAGTTATTGGATATTCTAGTTTTCAGATCCTGATGACATGGTTGGAACATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26050</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>189538</contig_pos>
        <strand></strand>
        <context>aacgccccaa[A/C]ccgtcaactt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTTAACGGTTCAGAAGCTTTACCGTAAACTGTCTAATAGAACGCCCCAA</left_flank>
        <right_flank>CCGTCAACTTTGAACCCATATATCTCGTTTTCTGTAAAAGATATCAAGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGAAAGGACTCGACTCTCTAAAGACTGCTTTTTTGGCACATACAAAAGTCAAAATTTTCTAGTTTTGAGATTTTGATGACGTGGTTGAAACATCAGTTTTGGTGTTACGGTTCAGAAGCTTTGGTGAACACCGTAAACACTCTAGCCAACTTTGAGCCCTTATATCTACTTTCCTGTGAAAGATATTGAAAAATAGTCAACCGACAAAATGTTCATCACAATTAAAAAATATTTTTACAGCTGATTACTTTTTGATATCTTTTACAGGAATCGAGATAAATTAGCTCAAAGTGAACAGTCCGTGGGCATTCTATTAACGTATTTACGTTATATTTATTGGTCGAGCACAAACCTTTTCGGAAGTTAGGAAAATAATTGTTTGGTATTTCGAGTTATTGGATATTCTAGTTTTCAGATCCTGATGACATGGTTGGAACATCAGATTTGCTTTAACGGTTCAGAAGCTTTACCGTAAACTGTCTAATAGAACGCCCCAAACCGTCAACTTTGAACCCATATATCTCGTTTTCTGTAAAAGATATCAAGAAGTAGTCAACTAACAAAATGTTTATCATAATTTCAAAAATATTTTTTAACTGAGCGCATGTTTATAACTTTTACAAGAACCGAGATAAATTAGCTCAAAGTTGACTTATCGGAAGTTGGGTATACACATTTTTTCGGAATTTCAAATTATGGGAGCCCCGTTCCCCAAATTCTCTTTTCAACTTCTAATCAAAACTAAAATCTTAAAGACAGGATCCCGAACAGTGCTCGTGTGCCAATAGAACCTGACATCTTTTATACTGATATCAGAACCTCTAATGATCTTTTGAAGAACTCTAGAGTCAACAGATGCGATACAAAAAAAACACACTGTGACGTAGAACGTAAACTGAAGAAGATTCTCTGAAGAGAAAACGAAATAGGAGCAGAAACAGAAGAAGACAGAAAAGACGTCAAAAGATGAGATAAAATGTTTGTAGTTGCTACCCCCG</canonical>
            <polymorphic>GGAGAAAGGACTCGACTCTCTAAAGACTGCTTTTTTGGCACATACAAAAGTCAAAATTTTCTAGTTTTGAGATTTTGATGACGTGGTTGAAACATCAGTTTTGGTGTTACGGTTCAGAAGCTTTGGTGAACACCGTAAACACTCTAGCCAACTTTGAGCCCTTATATCTACTTTCCTGTGAAAGATATTGAAAAATAGTCAACCGACAAAATGTTCATCACAATTAAAAAATATTTTTACAGCTGATTACTTTTTGATATCTTTTACAGGAATCGAGATAAATTAGCTCAAAGTGAACAGTCCGTGGGCATTCTATTAACGTATTTACGTTATATTTATTGGTCGAGCACAAACCTTTTCGGAAGTTAGGAAAATAATTGTTTGGTATTTCGAGTTATTGGATATTCTAGTTTTCAGATCCTGATGACATGGTTGGAACATCAGATTTGCTTTAACGGTTCAGAAGCTTTACCGTAAACTGTCTAATAGAACGCCCCAAMCCGTCAACTTTGAACCCATATATCTCGTTTTCTGTAAAAGATATCAAGAAGTAGTCAACTAACAAAATGTTTATCATAATTTCAAAAATATTTTTTAACTGAGCGCATGTTTATAACTTTTACAAGAACCGAGATAAATTAGCTCAAAGTTGACTTATCGGAAGTTGGGTATACACATTTTTTCGGAATTTCAAATTATGGGAGCCCCGTTCCCCAAATTCTCTTTTCAACTTCTAATCAAAACTAAAATCTTAAAGACAGGATCCCGAACAGTGCTCGTGTGCCAATAGAACCTGACATCTTTTATACTGATATCAGAACCTCTAATGATCTTTTGAAGAACTCTAGAGTCAACAGATGCGATACAAAAAAAACACACTGTGACGTAGAACGTAAACTGAAGAAGATTCTCTGAAGAGAAAACGAAATAGGAGCAGAAACAGAAGAAGACAGAAAAGACGTCAAAAGATGAGATAAAATGTTTGTAGTTGCTACCCCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>270 165 158 120 111 108 23 22 16 7</canonical_bands>
                <polymorphic_bands>292 165 158 120 111 108 23 16 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAACATCAGATTTGCTTTAAC</pcr_primer_p1>
		<pcr_primer_p2>GTGTATACCCAACTTCCGATAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GGAACATCAGATTTGCTTTAACGGTTCAGAAGCTTTACCGTAAACTGTCTAATAGAACGCCCCAAACCGTCAACTTTGAACCCATATATCTCGTTTTCTGTAAAAGATATCAAGAAGTAGTCAACTAACAAAATGTTTATCATAATTTCAAAAATATTTTTTAACTGAGCGCATGTTTATAACTTTTACAAGAACCGAGATAAATTAGCTCAAAGTTGACTTATCGGAAGTTGGGTATACAC</canonical_amplicon>
		<polymorphic_amplicon>GGAACATCAGATTTGCTTTAACGGTTCAGAAGCTTTACCGTAAACTGTCTAATAGAACGCCCCAAMCCGTCAACTTTGAACCCATATATCTCGTTTTCTGTAAAAGATATCAAGAAGTAGTCAACTAACAAAATGTTTATCATAATTTCAAAAATATTTTTTAACTGAGCGCATGTTTATAACTTTTACAAGAACCGAGATAAATTAGCTCAAAGTTGACTTATCGGAAGTTGGGTATACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26051</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>189641</contig_pos>
        <strand></strand>
        <context>ttttaactga[G/C]cgcatgttta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AGTCAACTAACAAAATGTTTATCATAATTTCAAAAATATTTTTTAACTGA</left_flank>
        <right_flank>CGCATGTTTATAACTTTTACAAGAACCGAGATAAATTAGCTCAAAGTTGA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGTTACGGTTCAGAAGCTTTGGTGAACACCGTAAACACTCTAGCCAACTTTGAGCCCTTATATCTACTTTCCTGTGAAAGATATTGAAAAATAGTCAACCGACAAAATGTTCATCACAATTAAAAAATATTTTTACAGCTGATTACTTTTTGATATCTTTTACAGGAATCGAGATAAATTAGCTCAAAGTGAACAGTCCGTGGGCATTCTATTAACGTATTTACGTTATATTTATTGGTCGAGCACAAACCTTTTCGGAAGTTAGGAAAATAATTGTTTGGTATTTCGAGTTATTGGATATTCTAGTTTTCAGATCCTGATGACATGGTTGGAACATCAGATTTGCTTTAACGGTTCAGAAGCTTTACCGTAAACTGTCTAATAGAACGCCCCAAACCGTCAACTTTGAACCCATATATCTCGTTTTCTGTAAAAGATATCAAGAAGTAGTCAACTAACAAAATGTTTATCATAATTTCAAAAATATTTTTTAACTGAGCGCATGTTTATAACTTTTACAAGAACCGAGATAAATTAGCTCAAAGTTGACTTATCGGAAGTTGGGTATACACATTTTTTCGGAATTTCAAATTATGGGAGCCCCGTTCCCCAAATTCTCTTTTCAACTTCTAATCAAAACTAAAATCTTAAAGACAGGATCCCGAACAGTGCTCGTGTGCCAATAGAACCTGACATCTTTTATACTGATATCAGAACCTCTAATGATCTTTTGAAGAACTCTAGAGTCAACAGATGCGATACAAAAAAAACACACTGTGACGTAGAACGTAAACTGAAGAAGATTCTCTGAAGAGAAAACGAAATAGGAGCAGAAACAGAAGAAGACAGAAAAGACGTCAAAAGATGAGATAAAATGTTTGTAGTTGCTACCCCCGCTAGCTGGGGGATATGGTAGCTGTGGAGTGGACCGGGTGAATACAACTGGGAGAGCTTATGTATGGACGACACTCAAAATTGAATGGCTTAGCGGGGGTGCTT</canonical>
            <polymorphic>GTGTTACGGTTCAGAAGCTTTGGTGAACACCGTAAACACTCTAGCCAACTTTGAGCCCTTATATCTACTTTCCTGTGAAAGATATTGAAAAATAGTCAACCGACAAAATGTTCATCACAATTAAAAAATATTTTTACAGCTGATTACTTTTTGATATCTTTTACAGGAATCGAGATAAATTAGCTCAAAGTGAACAGTCCGTGGGCATTCTATTAACGTATTTACGTTATATTTATTGGTCGAGCACAAACCTTTTCGGAAGTTAGGAAAATAATTGTTTGGTATTTCGAGTTATTGGATATTCTAGTTTTCAGATCCTGATGACATGGTTGGAACATCAGATTTGCTTTAACGGTTCAGAAGCTTTACCGTAAACTGTCTAATAGAACGCCCCAAACCGTCAACTTTGAACCCATATATCTCGTTTTCTGTAAAAGATATCAAGAAGTAGTCAACTAACAAAATGTTTATCATAATTTCAAAAATATTTTTTAACTGASCGCATGTTTATAACTTTTACAAGAACCGAGATAAATTAGCTCAAAGTTGACTTATCGGAAGTTGGGTATACACATTTTTTCGGAATTTCAAATTATGGGAGCCCCGTTCCCCAAATTCTCTTTTCAACTTCTAATCAAAACTAAAATCTTAAAGACAGGATCCCGAACAGTGCTCGTGTGCCAATAGAACCTGACATCTTTTATACTGATATCAGAACCTCTAATGATCTTTTGAAGAACTCTAGAGTCAACAGATGCGATACAAAAAAAACACACTGTGACGTAGAACGTAAACTGAAGAAGATTCTCTGAAGAGAAAACGAAATAGGAGCAGAAACAGAAGAAGACAGAAAAGACGTCAAAAGATGAGATAAAATGTTTGTAGTTGCTACCCCCGCTAGCTGGGGGATATGGTAGCTGTGGAGTGGACCGGGTGAATACAACTGGGAGAGCTTATGTATGGACGACACTCAAAATTGAATGGCTTAGCGGGGGTGCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>496 489 15</canonical_bands>
                <polymorphic_bands>985 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAACATCAGATTTGCTTTAAC</pcr_primer_p1>
		<pcr_primer_p2>GTGTATACCCAACTTCCGATAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GGAACATCAGATTTGCTTTAACGGTTCAGAAGCTTTACCGTAAACTGTCTAATAGAACGCCCCAAACCGTCAACTTTGAACCCATATATCTCGTTTTCTGTAAAAGATATCAAGAAGTAGTCAACTAACAAAATGTTTATCATAATTTCAAAAATATTTTTTAACTGAGCGCATGTTTATAACTTTTACAAGAACCGAGATAAATTAGCTCAAAGTTGACTTATCGGAAGTTGGGTATACAC</canonical_amplicon>
		<polymorphic_amplicon>GGAACATCAGATTTGCTTTAACGGTTCAGAAGCTTTACCGTAAACTGTCTAATAGAACGCCCCAAACCGTCAACTTTGAACCCATATATCTCGTTTTCTGTAAAAGATATCAAGAAGTAGTCAACTAACAAAATGTTTATCATAATTTCAAAAATATTTTTTAACTGASCGCATGTTTATAACTTTTACAAGAACCGAGATAAATTAGCTCAAAGTTGACTTATCGGAAGTTGGGTATACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26052</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>189724</contig_pos>
        <strand>+</strand>
        <context>CATTTTTTCG[A/G]AATTTCAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTAGCTCAAAGTTGACTTATCGGAAGTTGGGTATACACATTTTTTCG</left_flank>
        <right_flank>AATTTCAAATTATGGGAGCCCCGTTCCCCAAATTCTCTTTTCAACTTCTA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGAAAAATAGTCAACCGACAAAATGTTCATCACAATTAAAAAATATTTTTACAGCTGATTACTTTTTGATATCTTTTACAGGAATCGAGATAAATTAGCTCAAAGTGAACAGTCCGTGGGCATTCTATTAACGTATTTACGTTATATTTATTGGTCGAGCACAAACCTTTTCGGAAGTTAGGAAAATAATTGTTTGGTATTTCGAGTTATTGGATATTCTAGTTTTCAGATCCTGATGACATGGTTGGAACATCAGATTTGCTTTAACGGTTCAGAAGCTTTACCGTAAACTGTCTAATAGAACGCCCCAAACCGTCAACTTTGAACCCATATATCTCGTTTTCTGTAAAAGATATCAAGAAGTAGTCAACTAACAAAATGTTTATCATAATTTCAAAAATATTTTTTAACTGAGCGCATGTTTATAACTTTTACAAGAACCGAGATAAATTAGCTCAAAGTTGACTTATCGGAAGTTGGGTATACACATTTTTTCGGAATTTCAAATTATGGGAGCCCCGTTCCCCAAATTCTCTTTTCAACTTCTAATCAAAACTAAAATCTTAAAGACAGGATCCCGAACAGTGCTCGTGTGCCAATAGAACCTGACATCTTTTATACTGATATCAGAACCTCTAATGATCTTTTGAAGAACTCTAGAGTCAACAGATGCGATACAAAAAAAACACACTGTGACGTAGAACGTAAACTGAAGAAGATTCTCTGAAGAGAAAACGAAATAGGAGCAGAAACAGAAGAAGACAGAAAAGACGTCAAAAGATGAGATAAAATGTTTGTAGTTGCTACCCCCGCTAGCTGGGGGATATGGTAGCTGTGGAGTGGACCGGGTGAATACAACTGGGAGAGCTTATGTATGGACGACACTCAAAATTGAATGGCTTAGCGGGGGTGCTTCGCTCTAAAAATGTTATGAAAAACGGATACAGAAGCAATTTCCGAGAGGATCGAAAAACTCTCCATTGTTAGAGATTCAATTT</canonical>
            <polymorphic>ATTGAAAAATAGTCAACCGACAAAATGTTCATCACAATTAAAAAATATTTTTACAGCTGATTACTTTTTGATATCTTTTACAGGAATCGAGATAAATTAGCTCAAAGTGAACAGTCCGTGGGCATTCTATTAACGTATTTACGTTATATTTATTGGTCGAGCACAAACCTTTTCGGAAGTTAGGAAAATAATTGTTTGGTATTTCGAGTTATTGGATATTCTAGTTTTCAGATCCTGATGACATGGTTGGAACATCAGATTTGCTTTAACGGTTCAGAAGCTTTACCGTAAACTGTCTAATAGAACGCCCCAAACCGTCAACTTTGAACCCATATATCTCGTTTTCTGTAAAAGATATCAAGAAGTAGTCAACTAACAAAATGTTTATCATAATTTCAAAAATATTTTTTAACTGAGCGCATGTTTATAACTTTTACAAGAACCGAGATAAATTAGCTCAAAGTTGACTTATCGGAAGTTGGGTATACACATTTTTTCGRAATTTCAAATTATGGGAGCCCCGTTCCCCAAATTCTCTTTTCAACTTCTAATCAAAACTAAAATCTTAAAGACAGGATCCCGAACAGTGCTCGTGTGCCAATAGAACCTGACATCTTTTATACTGATATCAGAACCTCTAATGATCTTTTGAAGAACTCTAGAGTCAACAGATGCGATACAAAAAAAACACACTGTGACGTAGAACGTAAACTGAAGAAGATTCTCTGAAGAGAAAACGAAATAGGAGCAGAAACAGAAGAAGACAGAAAAGACGTCAAAAGATGAGATAAAATGTTTGTAGTTGCTACCCCCGCTAGCTGGGGGATATGGTAGCTGTGGAGTGGACCGGGTGAATACAACTGGGAGAGCTTATGTATGGACGACACTCAAAATTGAATGGCTTAGCGGGGGTGCTTCGCTCTAAAAATGTTATGAAAAACGGATACAGAAGCAATTTCCGAGAGGATCGAAAAACTCTCCATTGTTAGAGATTCAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>500 470 30</canonical_bands>
                <polymorphic_bands>530 470</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>233 198 175 132 96 55 40 27 25 19</canonical_bands>
                <polymorphic_bands>233 198 175 157 96 55 40 27 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTGCTTTAACGGTTCAGA</pcr_primer_p1>
		<pcr_primer_p2>TTTGATTAGAAGTTGAAAAGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>298</pcr_amplicon_size>
		<canonical_amplicon>ATTTGCTTTAACGGTTCAGAAGCTTTACCGTAAACTGTCTAATAGAACGCCCCAAACCGTCAACTTTGAACCCATATATCTCGTTTTCTGTAAAAGATATCAAGAAGTAGTCAACTAACAAAATGTTTATCATAATTTCAAAAATATTTTTTAACTGAGCGCATGTTTATAACTTTTACAAGAACCGAGATAAATTAGCTCAAAGTTGACTTATCGGAAGTTGGGTATACACATTTTTTCGGAATTTCAAATTATGGGAGCCCCGTTCCCCAAATTCTCTTTTCAACTTCTAATCAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTGCTTTAACGGTTCAGAAGCTTTACCGTAAACTGTCTAATAGAACGCCCCAAACCGTCAACTTTGAACCCATATATCTCGTTTTCTGTAAAAGATATCAAGAAGTAGTCAACTAACAAAATGTTTATCATAATTTCAAAAATATTTTTTAACTGAGCGCATGTTTATAACTTTTACAAGAACCGAGATAAATTAGCTCAAAGTTGACTTATCGGAAGTTGGGTATACACATTTTTTCGRAATTTCAAATTATGGGAGCCCCGTTCCCCAAATTCTCTTTTCAACTTCTAATCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26053</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>189902</contig_pos>
        <strand>+</strand>
        <context>ACAGATGCGA[C/T]ACAAAAAAAM</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCAGAACCTCTAATGATCTTTTGAAGAACTCTAGAGTCAACAGATGCGA</left_flank>
        <right_flank>ACAAAAAAAACACACTGTGACGTAGAACGTAAACTGAAGAAGATTCTCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTAGGAAAATAATTGTTTGGTATTTCGAGTTATTGGATATTCTAGTTTTCAGATCCTGATGACATGGTTGGAACATCAGATTTGCTTTAACGGTTCAGAAGCTTTACCGTAAACTGTCTAATAGAACGCCCCAAACCGTCAACTTTGAACCCATATATCTCGTTTTCTGTAAAAGATATCAAGAAGTAGTCAACTAACAAAATGTTTATCATAATTTCAAAAATATTTTTTAACTGAGCGCATGTTTATAACTTTTACAAGAACCGAGATAAATTAGCTCAAAGTTGACTTATCGGAAGTTGGGTATACACATTTTTTCGGAATTTCAAATTATGGGAGCCCCGTTCCCCAAATTCTCTTTTCAACTTCTAATCAAAACTAAAATCTTAAAGACAGGATCCCGAACAGTGCTCGTGTGCCAATAGAACCTGACATCTTTTATACTGATATCAGAACCTCTAATGATCTTTTGAAGAACTCTAGAGTCAACAGATGCGATACAAAAAAAACACACTGTGACGTAGAACGTAAACTGAAGAAGATTCTCTGAAGAGAAAACGAAATAGGAGCAGAAACAGAAGAAGACAGAAAAGACGTCAAAAGATGAGATAAAATGTTTGTAGTTGCTACCCCCGCTAGCTGGGGGATATGGTAGCTGTGGAGTGGACCGGGTGAATACAACTGGGAGAGCTTATGTATGGACGACACTCAAAATTGAATGGCTTAGCGGGGGTGCTTCGCTCTAAAAATGTTATGAAAAACGGATACAGAAGCAATTTCCGAGAGGATCGAAAAACTCTCCATTGTTAGAGATTCAATTTCCGGTGGTGCATTCACCTGTGTGGGAGGTACCGCTAGCTAAACGGTATAAGGTATACCGTATGACTTTGAAAGAAAAAGTAAGCGGGATAAGGTTTTTCAAAGTTTGATTGATGTTGATAAGATTACTTTATGAACCATTTTGTGTAATATTGGTAATATTGGTCAGAATGAATGGTC</canonical>
            <polymorphic>GTTAGGAAAATAATTGTTTGGTATTTCGAGTTATTGGATATTCTAGTTTTCAGATCCTGATGACATGGTTGGAACATCAGATTTGCTTTAACGGTTCAGAAGCTTTACCGTAAACTGTCTAATAGAACGCCCCAAACCGTCAACTTTGAACCCATATATCTCGTTTTCTGTAAAAGATATCAAGAAGTAGTCAACTAACAAAATGTTTATCATAATTTCAAAAATATTTTTTAACTGAGCGCATGTTTATAACTTTTACAAGAACCGAGATAAATTAGCTCAAAGTTGACTTATCGGAAGTTGGGTATACACATTTTTTCGGAATTTCAAATTATGGGAGCCCCGTTCCCCAAATTCTCTTTTCAACTTCTAATCAAAACTAAAATCTTAAAGACAGGATCCCGAACAGTGCTCGTGTGCCAATAGAACCTGACATCTTTTATACTGATATCAGAACCTCTAATGATCTTTTGAAGAACTCTAGAGTCAACAGATGCGAYACAAAAAAAACACACTGTGACGTAGAACGTAAACTGAAGAAGATTCTCTGAAGAGAAAACGAAATAGGAGCAGAAACAGAAGAAGACAGAAAAGACGTCAAAAGATGAGATAAAATGTTTGTAGTTGCTACCCCCGCTAGCTGGGGGATATGGTAGCTGTGGAGTGGACCGGGTGAATACAACTGGGAGAGCTTATGTATGGACGACACTCAAAATTGAATGGCTTAGCGGGGGTGCTTCGCTCTAAAAATGTTATGAAAAACGGATACAGAAGCAATTTCCGAGAGGATCGAAAAACTCTCCATTGTTAGAGATTCAATTTCCGGTGGTGCATTCACCTGTGTGGGAGGTACCGCTAGCTAAACGGTATAAGGTATACCGTATGACTTTGAAAGAAAAAGTAAGCGGGATAAGGTTTTTCAAAGTTTGATTGATGTTGATAAGATTACTTTATGAACCATTTTGTGTAATATTGGTAATATTGGTCAGAATGAATGGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAATTCTCTTTTCAACTTCTA</pcr_primer_p1>
		<pcr_primer_p2>ACGTCTTTTCTGTCTTCTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCAAATTCTCTTTTCAACTTCTAATCAAAACTAAAATCTTAAAGACAGGATCCCGAACAGTGCTCGTGTGCCAATAGAACCTGACATCTTTTATACTGATATCAGAACCTCTAATGATCTTTTGAAGAACTCTAGAGTCAACAGATGCGATACAAAAAAAACACACTGTGACGTAGAACGTAAACTGAAGAAGATTCTCTGAAGAGAAAACGAAATAGGAGCAGAAACAGAAGAAGACAGAAAAGACGT</canonical_amplicon>
		<polymorphic_amplicon>CCAAATTCTCTTTTCAACTTCTAATCAAAACTAAAATCTTAAAGACAGGATCCCGAACAGTGCTCGTGTGCCAATAGAACCTGACATCTTTTATACTGATATCAGAACCTCTAATGATCTTTTGAAGAACTCTAGAGTCAACAGATGCGAYACAAAAAAAACACACTGTGACGTAGAACGTAAACTGAAGAAGATTCTCTGAAGAGAAAACGAAATAGGAGCAGAAACAGAAGAAGACAGAAAAGACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26054</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>189912</contig_pos>
        <strand>+</strand>
        <context>YACAAAAAAA[A/C]CACACTGTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTAATGATCTTTTGAAGAACTCTAGAGTCAACAGATGCGATACAAAAAAA</left_flank>
        <right_flank>CACACTGTGACGTAGAACGTAAACTGAAGAAGATTCTCTGAAGAGAAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTGTTTGGTATTTCGAGTTATTGGATATTCTAGTTTTCAGATCCTGATGACATGGTTGGAACATCAGATTTGCTTTAACGGTTCAGAAGCTTTACCGTAAACTGTCTAATAGAACGCCCCAAACCGTCAACTTTGAACCCATATATCTCGTTTTCTGTAAAAGATATCAAGAAGTAGTCAACTAACAAAATGTTTATCATAATTTCAAAAATATTTTTTAACTGAGCGCATGTTTATAACTTTTACAAGAACCGAGATAAATTAGCTCAAAGTTGACTTATCGGAAGTTGGGTATACACATTTTTTCGGAATTTCAAATTATGGGAGCCCCGTTCCCCAAATTCTCTTTTCAACTTCTAATCAAAACTAAAATCTTAAAGACAGGATCCCGAACAGTGCTCGTGTGCCAATAGAACCTGACATCTTTTATACTGATATCAGAACCTCTAATGATCTTTTGAAGAACTCTAGAGTCAACAGATGCGATACAAAAAAAACACACTGTGACGTAGAACGTAAACTGAAGAAGATTCTCTGAAGAGAAAACGAAATAGGAGCAGAAACAGAAGAAGACAGAAAAGACGTCAAAAGATGAGATAAAATGTTTGTAGTTGCTACCCCCGCTAGCTGGGGGATATGGTAGCTGTGGAGTGGACCGGGTGAATACAACTGGGAGAGCTTATGTATGGACGACACTCAAAATTGAATGGCTTAGCGGGGGTGCTTCGCTCTAAAAATGTTATGAAAAACGGATACAGAAGCAATTTCCGAGAGGATCGAAAAACTCTCCATTGTTAGAGATTCAATTTCCGGTGGTGCATTCACCTGTGTGGGAGGTACCGCTAGCTAAACGGTATAAGGTATACCGTATGACTTTGAAAGAAAAAGTAAGCGGGATAAGGTTTTTCAAAGTTTGATTGATGTTGATAAGATTACTTTATGAACCATTTTGTGTAATATTGGTAATATTGGTCAGAATGAATGGTCAAATAGATTT</canonical>
            <polymorphic>TAATTGTTTGGTATTTCGAGTTATTGGATATTCTAGTTTTCAGATCCTGATGACATGGTTGGAACATCAGATTTGCTTTAACGGTTCAGAAGCTTTACCGTAAACTGTCTAATAGAACGCCCCAAACCGTCAACTTTGAACCCATATATCTCGTTTTCTGTAAAAGATATCAAGAAGTAGTCAACTAACAAAATGTTTATCATAATTTCAAAAATATTTTTTAACTGAGCGCATGTTTATAACTTTTACAAGAACCGAGATAAATTAGCTCAAAGTTGACTTATCGGAAGTTGGGTATACACATTTTTTCGGAATTTCAAATTATGGGAGCCCCGTTCCCCAAATTCTCTTTTCAACTTCTAATCAAAACTAAAATCTTAAAGACAGGATCCCGAACAGTGCTCGTGTGCCAATAGAACCTGACATCTTTTATACTGATATCAGAACCTCTAATGATCTTTTGAAGAACTCTAGAGTCAACAGATGCGATACAAAAAAAMCACACTGTGACGTAGAACGTAAACTGAAGAAGATTCTCTGAAGAGAAAACGAAATAGGAGCAGAAACAGAAGAAGACAGAAAAGACGTCAAAAGATGAGATAAAATGTTTGTAGTTGCTACCCCCGCTAGCTGGGGGATATGGTAGCTGTGGAGTGGACCGGGTGAATACAACTGGGAGAGCTTATGTATGGACGACACTCAAAATTGAATGGCTTAGCGGGGGTGCTTCGCTCTAAAAATGTTATGAAAAACGGATACAGAAGCAATTTCCGAGAGGATCGAAAAACTCTCCATTGTTAGAGATTCAATTTCCGGTGGTGCATTCACCTGTGTGGGAGGTACCGCTAGCTAAACGGTATAAGGTATACCGTATGACTTTGAAAGAAAAAGTAAGCGGGATAAGGTTTTTCAAAGTTTGATTGATGTTGATAAGATTACTTTATGAACCATTTTGTGTAATATTGGTAATATTGGTCAGAATGAATGGTCAAATAGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAATTCTCTTTTCAACTTCTA</pcr_primer_p1>
		<pcr_primer_p2>ACGTCTTTTCTGTCTTCTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCAAATTCTCTTTTCAACTTCTAATCAAAACTAAAATCTTAAAGACAGGATCCCGAACAGTGCTCGTGTGCCAATAGAACCTGACATCTTTTATACTGATATCAGAACCTCTAATGATCTTTTGAAGAACTCTAGAGTCAACAGATGCGATACAAAAAAAACACACTGTGACGTAGAACGTAAACTGAAGAAGATTCTCTGAAGAGAAAACGAAATAGGAGCAGAAACAGAAGAAGACAGAAAAGACGT</canonical_amplicon>
		<polymorphic_amplicon>CCAAATTCTCTTTTCAACTTCTAATCAAAACTAAAATCTTAAAGACAGGATCCCGAACAGTGCTCGTGTGCCAATAGAACCTGACATCTTTTATACTGATATCAGAACCTCTAATGATCTTTTGAAGAACTCTAGAGTCAACAGATGCGATACAAAAAAAMCACACTGTGACGTAGAACGTAAACTGAAGAAGATTCTCTGAAGAGAAAACGAAATAGGAGCAGAAACAGAAGAAGACAGAAAAGACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26055</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>193146</contig_pos>
        <strand>+</strand>
        <context>CCTAGAATTC[C/T]GGTTCAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTTCACATTTATTAAATTTTTCCAGCGTCTCATAAAGGCCTAGAATTC</left_flank>
        <right_flank>GGTTCAAAAATACCGTTAAAACTGTAATAGAACACCGTCCCTAGCTTGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAACCCCAGTTTTCTCGTTTAATATGGGAAAGTAGGTGGGAGATTCTGCAAAAACCAAGAAAAATAGTTTATATCAAGTTCAAGAAATCATTGTCACCTCCTCTGGAAAAAGTTCAACTTTGCCCTTGTCATCGTATGACGTAACCAATGAAGAATCTACCGCTTTCAATTATAGCATTGACATAAAAATTCAGGAAAGCACTAGGAAAACTCTGTGATAAGAAGCTTCGCCGCTTTCTCTGCTGATAAAACATCCACTCTACATGAGTATACTTCAATTTCCCTTTTTTCCAGCAACACCACCAGTTCGAACATGATCGACAACGTCGTATGAGCCACTTTGCACGCAGCAATGCTGTACACTATGCCGCCGCACCGCCGCCGCGGAAACAGGTTGGACACCGAGAAATTATACCATTTGTAGTTGTTACCACTTTTGTAGTTTGCGGTTTTCACATTTATTAAATTTTTCCAGCGTCTCATAAAGGCCTAGAATTCTGGTTCAAAAATACCGTTAAAACTGTAATAGAACACCGTCCCTAGCTTGGTACTTTGAGCCAATTTATCTCGGTTATTGTAGAAGTTATGAAATAGTGGTCAATTAAAAAATTATTTTTGATATTTTGATTAACATTTTGTCAGTTGACCACTTTTTGTCATAATTCACAGGAACCGCGATATATGGGCTCAAAGTTGACAGCATGGGTGACCTTCTATTAGAGGGTTTACAGTAATTTGTAGACTCTATGTTAACTCAATTTATCTTGATTCCTGTGAGAGTATATACCAAGATGTAGATTTTAAAAATATATTATTTTTTATCTTTTCTTTAAGGTCTCCTCTCCTCTTCCCGAAATCCCTCGCCGAATCTATGAACGAGGTCATGCCCACTCGAGATCCTGGAACCCCGGAGCGCAACCGTCTCCACCTCCTCTCTTAGATCCCAATACATATCATCAATTCTATGAACCAGTTATCCACAGCACAGCACCAGATGCT</canonical>
            <polymorphic>TCAACCCCAGTTTTCTCGTTTAATATGGGAAAGTAGGTGGGAGATTCTGCAAAAACCAAGAAAAATAGTTTATATCAAGTTCAAGAAATCATTGTCACCTCCTCTGGAAAAAGTTCAACTTTGCCCTTGTCATCGTATGACGTAACCAATGAAGAATCTACCGCTTTCAATTATAGCATTGACATAAAAATTCAGGAAAGCACTAGGAAAACTCTGTGATAAGAAGCTTCGCCGCTTTCTCTGCTGATAAAACATCCACTCTACATGAGTATACTTCAATTTCCCTTTTTTCCAGCAACACCACCAGTTCGAACATGATCGACAACGTCGTATGAGCCACTTTGCACGCAGCAATGCTGTACACTATGCCGCCGCACCGCCGCCGCGGAAACAGGTTGGACACCGAGAAATTATACCATTTGTAGTTGTTACCACTTTTGTAGTTTGCGGTTTTCACATTTATTAAATTTTTCCAGCGTCTCATAAAGGCCTAGAATTCYGGTTCAAAAATACCGTTAAAACTGTAATAGAACACCGTCCCTAGCTTGGTACTTTGAGCCAATTTATCTCGGTTATTGTAGAAGTTATGAAATAGTGGTCAATTAAAAAATTATTTTTGATATTTTGATTAACATTTTGTCAGTTGACCACTTTTTGTCATAATTCACAGGAACCGCGATATATGGGCTCAAAGTTGACAGCATGGGTGACCTTCTATTAGAGGGTTTACAGTAATTTGTAGACTCTATGTTAACTCAATTTATCTTGATTCCTGTGAGAGTATATACCAAGATGTAGATTTTAAAAATATATTATTTTTTATCTTTTCTTTAAGGTCTCCTCTCCTCTTCCCGAAATCCCTCGCCGAATCTATGAACGAGGTCATGCCCACTCGAGATCCTGGAACCCCGGAGCGCAACCGTCTCCACCTCCTCTCTTAGATCCCAATACATATCATCAATTCTATGAACCAGTTATCCACAGCACAGCACCAGATGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGCGGTTTTCACATTTATTA</pcr_primer_p1>
		<pcr_primer_p2>ACTCTCACAGGAATCAAGATAAA</pcr_primer_p2>
		<pcr_amplicon_size>338</pcr_amplicon_size>
		<canonical_amplicon>TTGCGGTTTTCACATTTATTAAATTTTTCCAGCGTCTCATAAAGGCCTAGAATTCTGGTTCAAAAATACCGTTAAAACTGTAATAGAACACCGTCCCTAGCTTGGTACTTTGAGCCAATTTATCTCGGTTATTGTAGAAGTTATGAAATAGTGGTCAATTAAAAAATTATTTTTGATATTTTGATTAACATTTTGTCAGTTGACCACTTTTTGTCATAATTCACAGGAACCGCGATATATGGGCTCAAAGTTGACAGCATGGGTGACCTTCTATTAGAGGGTTTACAGTAATTTGTAGACTCTATGTTAACTCAATTTATCTTGATTCCTGTGAGAGT</canonical_amplicon>
		<polymorphic_amplicon>TTGCGGTTTTCACATTTATTAAATTTTTCCAGCGTCTCATAAAGGCCTAGAATTCYGGTTCAAAAATACCGTTAAAACTGTAATAGAACACCGTCCCTAGCTTGGTACTTTGAGCCAATTTATCTCGGTTATTGTAGAAGTTATGAAATAGTGGTCAATTAAAAAATTATTTTTGATATTTTGATTAACATTTTGTCAGTTGACCACTTTTTGTCATAATTCACAGGAACCGCGATATATGGGCTCAAAGTTGACAGCATGGGTGACCTTCTATTAGAGGGTTTACAGTAATTTGTAGACTCTATGTTAACTCAATTTATCTTGATTCCTGTGAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26056</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>193233</contig_pos>
        <strand></strand>
        <context>tgtagaagtt[A/G]tgaaatagtg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCCCTAGCTTGGTACTTTGAGCCAATTTATCTCGGTTATTGTAGAAGTT</left_flank>
        <right_flank>TGAAATAGTGGTCAATTAAAAAATTATTTTTGATATTTTGATTAACATTT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCATTGTCACCTCCTCTGGAAAAAGTTCAACTTTGCCCTTGTCATCGTATGACGTAACCAATGAAGAATCTACCGCTTTCAATTATAGCATTGACATAAAAATTCAGGAAAGCACTAGGAAAACTCTGTGATAAGAAGCTTCGCCGCTTTCTCTGCTGATAAAACATCCACTCTACATGAGTATACTTCAATTTCCCTTTTTTCCAGCAACACCACCAGTTCGAACATGATCGACAACGTCGTATGAGCCACTTTGCACGCAGCAATGCTGTACACTATGCCGCCGCACCGCCGCCGCGGAAACAGGTTGGACACCGAGAAATTATACCATTTGTAGTTGTTACCACTTTTGTAGTTTGCGGTTTTCACATTTATTAAATTTTTCCAGCGTCTCATAAAGGCCTAGAATTCTGGTTCAAAAATACCGTTAAAACTGTAATAGAACACCGTCCCTAGCTTGGTACTTTGAGCCAATTTATCTCGGTTATTGTAGAAGTTATGAAATAGTGGTCAATTAAAAAATTATTTTTGATATTTTGATTAACATTTTGTCAGTTGACCACTTTTTGTCATAATTCACAGGAACCGCGATATATGGGCTCAAAGTTGACAGCATGGGTGACCTTCTATTAGAGGGTTTACAGTAATTTGTAGACTCTATGTTAACTCAATTTATCTTGATTCCTGTGAGAGTATATACCAAGATGTAGATTTTAAAAATATATTATTTTTTATCTTTTCTTTAAGGTCTCCTCTCCTCTTCCCGAAATCCCTCGCCGAATCTATGAACGAGGTCATGCCCACTCGAGATCCTGGAACCCCGGAGCGCAACCGTCTCCACCTCCTCTCTTAGATCCCAATACATATCATCAATTCTATGAACCAGTTATCCACAGCACAGCACCAGATGCTGTCAATGATCCATACATCCTCCAAGTCTCCAGTTCTCGTCGATTAGAAGTTCCAATCATCCAGGAGCCTCTGCCCCCCACACCGCAT</canonical>
            <polymorphic>ATCATTGTCACCTCCTCTGGAAAAAGTTCAACTTTGCCCTTGTCATCGTATGACGTAACCAATGAAGAATCTACCGCTTTCAATTATAGCATTGACATAAAAATTCAGGAAAGCACTAGGAAAACTCTGTGATAAGAAGCTTCGCCGCTTTCTCTGCTGATAAAACATCCACTCTACATGAGTATACTTCAATTTCCCTTTTTTCCAGCAACACCACCAGTTCGAACATGATCGACAACGTCGTATGAGCCACTTTGCACGCAGCAATGCTGTACACTATGCCGCCGCACCGCCGCCGCGGAAACAGGTTGGACACCGAGAAATTATACCATTTGTAGTTGTTACCACTTTTGTAGTTTGCGGTTTTCACATTTATTAAATTTTTCCAGCGTCTCATAAAGGCCTAGAATTCTGGTTCAAAAATACCGTTAAAACTGTAATAGAACACCGTCCCTAGCTTGGTACTTTGAGCCAATTTATCTCGGTTATTGTAGAAGTTRTGAAATAGTGGTCAATTAAAAAATTATTTTTGATATTTTGATTAACATTTTGTCAGTTGACCACTTTTTGTCATAATTCACAGGAACCGCGATATATGGGCTCAAAGTTGACAGCATGGGTGACCTTCTATTAGAGGGTTTACAGTAATTTGTAGACTCTATGTTAACTCAATTTATCTTGATTCCTGTGAGAGTATATACCAAGATGTAGATTTTAAAAATATATTATTTTTTATCTTTTCTTTAAGGTCTCCTCTCCTCTTCCCGAAATCCCTCGCCGAATCTATGAACGAGGTCATGCCCACTCGAGATCCTGGAACCCCGGAGCGCAACCGTCTCCACCTCCTCTCTTAGATCCCAATACATATCATCAATTCTATGAACCAGTTATCCACAGCACAGCACCAGATGCTGTCAATGATCCATACATCCTCCAAGTCTCCAGTTCTCGTCGATTAGAAGTTCCAATCATCCAGGAGCCTCTGCCCCCCACACCGCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTCTCATAAAGGCCTAGAAT</pcr_primer_p1>
		<pcr_primer_p2>CTCTCACAGGAATCAAGATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>305</pcr_amplicon_size>
		<canonical_amplicon>CGTCTCATAAAGGCCTAGAATTCTGGTTCAAAAATACCGTTAAAACTGTAATAGAACACCGTCCCTAGCTTGGTACTTTGAGCCAATTTATCTCGGTTATTGTAGAAGTTATGAAATAGTGGTCAATTAAAAAATTATTTTTGATATTTTGATTAACATTTTGTCAGTTGACCACTTTTTGTCATAATTCACAGGAACCGCGATATATGGGCTCAAAGTTGACAGCATGGGTGACCTTCTATTAGAGGGTTTACAGTAATTTGTAGACTCTATGTTAACTCAATTTATCTTGATTCCTGTGAGAG</canonical_amplicon>
		<polymorphic_amplicon>CGTCTCATAAAGGCCTAGAATTCTGGTTCAAAAATACCGTTAAAACTGTAATAGAACACCGTCCCTAGCTTGGTACTTTGAGCCAATTTATCTCGGTTATTGTAGAAGTTRTGAAATAGTGGTCAATTAAAAAATTATTTTTGATATTTTGATTAACATTTTGTCAGTTGACCACTTTTTGTCATAATTCACAGGAACCGCGATATATGGGCTCAAAGTTGACAGCATGGGTGACCTTCTATTAGAGGGTTTACAGTAATTTGTAGACTCTATGTTAACTCAATTTATCTTGATTCCTGTGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26057</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>193321</contig_pos>
        <strand></strand>
        <context>tcacaggaac[C/T]gcgatatatg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGATTAACATTTTGTCAGTTGACCACTTTTTGTCATAATTCACAGGAAC</left_flank>
        <right_flank>GCGATATATGGGCTCAAAGTTGACAGCATGGGTGACCTTCTATTAGAGGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCATTGACATAAAAATTCAGGAAAGCACTAGGAAAACTCTGTGATAAGAAGCTTCGCCGCTTTCTCTGCTGATAAAACATCCACTCTACATGAGTATACTTCAATTTCCCTTTTTTCCAGCAACACCACCAGTTCGAACATGATCGACAACGTCGTATGAGCCACTTTGCACGCAGCAATGCTGTACACTATGCCGCCGCACCGCCGCCGCGGAAACAGGTTGGACACCGAGAAATTATACCATTTGTAGTTGTTACCACTTTTGTAGTTTGCGGTTTTCACATTTATTAAATTTTTCCAGCGTCTCATAAAGGCCTAGAATTCTGGTTCAAAAATACCGTTAAAACTGTAATAGAACACCGTCCCTAGCTTGGTACTTTGAGCCAATTTATCTCGGTTATTGTAGAAGTTATGAAATAGTGGTCAATTAAAAAATTATTTTTGATATTTTGATTAACATTTTGTCAGTTGACCACTTTTTGTCATAATTCACAGGAACCGCGATATATGGGCTCAAAGTTGACAGCATGGGTGACCTTCTATTAGAGGGTTTACAGTAATTTGTAGACTCTATGTTAACTCAATTTATCTTGATTCCTGTGAGAGTATATACCAAGATGTAGATTTTAAAAATATATTATTTTTTATCTTTTCTTTAAGGTCTCCTCTCCTCTTCCCGAAATCCCTCGCCGAATCTATGAACGAGGTCATGCCCACTCGAGATCCTGGAACCCCGGAGCGCAACCGTCTCCACCTCCTCTCTTAGATCCCAATACATATCATCAATTCTATGAACCAGTTATCCACAGCACAGCACCAGATGCTGTCAATGATCCATACATCCTCCAAGTCTCCAGTTCTCGTCGATTAGAAGTTCCAATCATCCAGGAGCCTCTGCCCCCCACACCGCATAACTCGGAGCGTCGTAGAAGTCACTTAGTTCCCAGACAAGCAAAATCTTTCGAGACGAATCCAGTGGATCGTCGTCATATGTTGGATC</canonical>
            <polymorphic>GCATTGACATAAAAATTCAGGAAAGCACTAGGAAAACTCTGTGATAAGAAGCTTCGCCGCTTTCTCTGCTGATAAAACATCCACTCTACATGAGTATACTTCAATTTCCCTTTTTTCCAGCAACACCACCAGTTCGAACATGATCGACAACGTCGTATGAGCCACTTTGCACGCAGCAATGCTGTACACTATGCCGCCGCACCGCCGCCGCGGAAACAGGTTGGACACCGAGAAATTATACCATTTGTAGTTGTTACCACTTTTGTAGTTTGCGGTTTTCACATTTATTAAATTTTTCCAGCGTCTCATAAAGGCCTAGAATTCTGGTTCAAAAATACCGTTAAAACTGTAATAGAACACCGTCCCTAGCTTGGTACTTTGAGCCAATTTATCTCGGTTATTGTAGAAGTTATGAAATAGTGGTCAATTAAAAAATTATTTTTGATATTTTGATTAACATTTTGTCAGTTGACCACTTTTTGTCATAATTCACAGGAACYGCGATATATGGGCTCAAAGTTGACAGCATGGGTGACCTTCTATTAGAGGGTTTACAGTAATTTGTAGACTCTATGTTAACTCAATTTATCTTGATTCCTGTGAGAGTATATACCAAGATGTAGATTTTAAAAATATATTATTTTTTATCTTTTCTTTAAGGTCTCCTCTCCTCTTCCCGAAATCCCTCGCCGAATCTATGAACGAGGTCATGCCCACTCGAGATCCTGGAACCCCGGAGCGCAACCGTCTCCACCTCCTCTCTTAGATCCCAATACATATCATCAATTCTATGAACCAGTTATCCACAGCACAGCACCAGATGCTGTCAATGATCCATACATCCTCCAAGTCTCCAGTTCTCGTCGATTAGAAGTTCCAATCATCCAGGAGCCTCTGCCCCCCACACCGCATAACTCGGAGCGTCGTAGAAGTCACTTAGTTCCCAGACAAGCAAAATCTTTCGAGACGAATCCAGTGGATCGTCGTCATATGTTGGATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 291 210</canonical_bands>
                <polymorphic_bands>790 210</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>408 291 137 93 57 5 3 3 3</canonical_bands>
                <polymorphic_bands>699 137 93 57 5 3 3 3</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>497 233 160 110</canonical_bands>
                <polymorphic_bands>730 160 110</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTCTCATAAAGGCCTAGAAT</pcr_primer_p1>
		<pcr_primer_p2>CTCTCACAGGAATCAAGATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>305</pcr_amplicon_size>
		<canonical_amplicon>CGTCTCATAAAGGCCTAGAATTCTGGTTCAAAAATACCGTTAAAACTGTAATAGAACACCGTCCCTAGCTTGGTACTTTGAGCCAATTTATCTCGGTTATTGTAGAAGTTATGAAATAGTGGTCAATTAAAAAATTATTTTTGATATTTTGATTAACATTTTGTCAGTTGACCACTTTTTGTCATAATTCACAGGAACCGCGATATATGGGCTCAAAGTTGACAGCATGGGTGACCTTCTATTAGAGGGTTTACAGTAATTTGTAGACTCTATGTTAACTCAATTTATCTTGATTCCTGTGAGAG</canonical_amplicon>
		<polymorphic_amplicon>CGTCTCATAAAGGCCTAGAATTCTGGTTCAAAAATACCGTTAAAACTGTAATAGAACACCGTCCCTAGCTTGGTACTTTGAGCCAATTTATCTCGGTTATTGTAGAAGTTATGAAATAGTGGTCAATTAAAAAATTATTTTTGATATTTTGATTAACATTTTGTCAGTTGACCACTTTTTGTCATAATTCACAGGAACYGCGATATATGGGCTCAAAGTTGACAGCATGGGTGACCTTCTATTAGAGGGTTTACAGTAATTTGTAGACTCTATGTTAACTCAATTTATCTTGATTCCTGTGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26058</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>193346</contig_pos>
        <strand></strand>
        <context>caaagttgac[A/C]gcatgggtga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACTTTTTGTCATAATTCACAGGAACCGCGATATATGGGCTCAAAGTTGAC</left_flank>
        <right_flank>GCATGGGTGACCTTCTATTAGAGGGTTTACAGTAATTTGTAGACTCTATG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTAGGAAAACTCTGTGATAAGAAGCTTCGCCGCTTTCTCTGCTGATAAAACATCCACTCTACATGAGTATACTTCAATTTCCCTTTTTTCCAGCAACACCACCAGTTCGAACATGATCGACAACGTCGTATGAGCCACTTTGCACGCAGCAATGCTGTACACTATGCCGCCGCACCGCCGCCGCGGAAACAGGTTGGACACCGAGAAATTATACCATTTGTAGTTGTTACCACTTTTGTAGTTTGCGGTTTTCACATTTATTAAATTTTTCCAGCGTCTCATAAAGGCCTAGAATTCTGGTTCAAAAATACCGTTAAAACTGTAATAGAACACCGTCCCTAGCTTGGTACTTTGAGCCAATTTATCTCGGTTATTGTAGAAGTTATGAAATAGTGGTCAATTAAAAAATTATTTTTGATATTTTGATTAACATTTTGTCAGTTGACCACTTTTTGTCATAATTCACAGGAACCGCGATATATGGGCTCAAAGTTGACAGCATGGGTGACCTTCTATTAGAGGGTTTACAGTAATTTGTAGACTCTATGTTAACTCAATTTATCTTGATTCCTGTGAGAGTATATACCAAGATGTAGATTTTAAAAATATATTATTTTTTATCTTTTCTTTAAGGTCTCCTCTCCTCTTCCCGAAATCCCTCGCCGAATCTATGAACGAGGTCATGCCCACTCGAGATCCTGGAACCCCGGAGCGCAACCGTCTCCACCTCCTCTCTTAGATCCCAATACATATCATCAATTCTATGAACCAGTTATCCACAGCACAGCACCAGATGCTGTCAATGATCCATACATCCTCCAAGTCTCCAGTTCTCGTCGATTAGAAGTTCCAATCATCCAGGAGCCTCTGCCCCCCACACCGCATAACTCGGAGCGTCGTAGAAGTCACTTAGTTCCCAGACAAGCAAAATCTTTCGAGACGAATCCAGTGGATCGTCGTCATATGTTGGATCATCGATCGTATACCCTTGCATCTTC</canonical>
            <polymorphic>CACTAGGAAAACTCTGTGATAAGAAGCTTCGCCGCTTTCTCTGCTGATAAAACATCCACTCTACATGAGTATACTTCAATTTCCCTTTTTTCCAGCAACACCACCAGTTCGAACATGATCGACAACGTCGTATGAGCCACTTTGCACGCAGCAATGCTGTACACTATGCCGCCGCACCGCCGCCGCGGAAACAGGTTGGACACCGAGAAATTATACCATTTGTAGTTGTTACCACTTTTGTAGTTTGCGGTTTTCACATTTATTAAATTTTTCCAGCGTCTCATAAAGGCCTAGAATTCTGGTTCAAAAATACCGTTAAAACTGTAATAGAACACCGTCCCTAGCTTGGTACTTTGAGCCAATTTATCTCGGTTATTGTAGAAGTTATGAAATAGTGGTCAATTAAAAAATTATTTTTGATATTTTGATTAACATTTTGTCAGTTGACCACTTTTTGTCATAATTCACAGGAACCGCGATATATGGGCTCAAAGTTGACMGCATGGGTGACCTTCTATTAGAGGGTTTACAGTAATTTGTAGACTCTATGTTAACTCAATTTATCTTGATTCCTGTGAGAGTATATACCAAGATGTAGATTTTAAAAATATATTATTTTTTATCTTTTCTTTAAGGTCTCCTCTCCTCTTCCCGAAATCCCTCGCCGAATCTATGAACGAGGTCATGCCCACTCGAGATCCTGGAACCCCGGAGCGCAACCGTCTCCACCTCCTCTCTTAGATCCCAATACATATCATCAATTCTATGAACCAGTTATCCACAGCACAGCACCAGATGCTGTCAATGATCCATACATCCTCCAAGTCTCCAGTTCTCGTCGATTAGAAGTTCCAATCATCCAGGAGCCTCTGCCCCCCACACCGCATAACTCGGAGCGTCGTAGAAGTCACTTAGTTCCCAGACAAGCAAAATCTTTCGAGACGAATCCAGTGGATCGTCGTCATATGTTGGATCATCGATCGTATACCCTTGCATCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTCTCATAAAGGCCTAGAAT</pcr_primer_p1>
		<pcr_primer_p2>CTCTCACAGGAATCAAGATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>305</pcr_amplicon_size>
		<canonical_amplicon>CGTCTCATAAAGGCCTAGAATTCTGGTTCAAAAATACCGTTAAAACTGTAATAGAACACCGTCCCTAGCTTGGTACTTTGAGCCAATTTATCTCGGTTATTGTAGAAGTTATGAAATAGTGGTCAATTAAAAAATTATTTTTGATATTTTGATTAACATTTTGTCAGTTGACCACTTTTTGTCATAATTCACAGGAACCGCGATATATGGGCTCAAAGTTGACAGCATGGGTGACCTTCTATTAGAGGGTTTACAGTAATTTGTAGACTCTATGTTAACTCAATTTATCTTGATTCCTGTGAGAG</canonical_amplicon>
		<polymorphic_amplicon>CGTCTCATAAAGGCCTAGAATTCTGGTTCAAAAATACCGTTAAAACTGTAATAGAACACCGTCCCTAGCTTGGTACTTTGAGCCAATTTATCTCGGTTATTGTAGAAGTTATGAAATAGTGGTCAATTAAAAAATTATTTTTGATATTTTGATTAACATTTTGTCAGTTGACCACTTTTTGTCATAATTCACAGGAACCGCGATATATGGGCTCAAAGTTGACMGCATGGGTGACCTTCTATTAGAGGGTTTACAGTAATTTGTAGACTCTATGTTAACTCAATTTATCTTGATTCCTGTGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26063</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>376226</contig_pos>
        <strand></strand>
        <context>atacatttcc[A/G]gtttttttca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTGAGTACAACCCACTTGGCATTTCGCTAATTGTAGTCATACATTTCC</left_flank>
        <right_flank>GTTTTTTTCAAATTGATGAAGTTGTGTGGGTAGTTCGAAAGAGTTCATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTCGAATTATTCCGATCTTGAAAATTTCGAAATATTCTGAATTTCAAATTTTCGAAATTTTGGAATTTCAGAACAGAAAAACTCAGCGAATTGAAAAAATCAAGTCAAACCATTTTTTGTTTTCAAGTGAACTTTTGTAAATGAAGATGACAATGGCTGGATAGGTAGTAGTCCGAACAAAGTTTGAGCTATGCGGTGGATAAGGGAGAATTGTCCAGCCATATCCATCGAGATAGGCCTGGGTCTTCCTTTCAGCATAAGGTCGCAGATTGCAATTTTGAAAATAAAACTTTGTGTTTCTCTCCAATCGAGATCCACATAAAGTTTTGTGATCTAACAAGAATACGTTTTGGTAATAGTATCATCTAACAGCTCACTCCTTGGTAGACCACGATACCGACAACATCCCAATTTTGTCATGAATTTCATGTTTCGGGACGTCTGGTGTTTGAGTACAACCCACTTGGCATTTCGCTAATTGTAGTCATACATTTCCAGTTTTTTTCAAATTGATGAAGTTGTGTGGGTAGTTCGAAAGAGTTCATTTTCATTGTGAACGTCCATAGAAATACAAATAAAATCAAATTCCGATAATGTAAATTGTCAGTGACAAAAACGTTGGGCATATCTCTTGACACTACTAGACTCCACCAGTAAAACGTCAGCTGAGTGATAAAACGATAGCTTTTATCGTTTTTGAAAAAAGTTTGAAAACAACTGATCAAAAATGGAAAGAACGTTCCGAACACTACCAGTGCAGATACCCATGTGAATGGGGACCTAGGATTCTGGATTGGTAAGAAATTTAGTTTCAAAAAAGGAGAACTCATGGAAAACGTTCTTGAAATAAAAAAACCAAGCTGATCCTATTCTTGCATTACTTTCTTTTTCTATTTTTTTCTCTCCTATTCCGTTTTTTCTCCCATATTTCACTCTTCCATTTTTCTTCCGTTACTCTCAAAACCACAAAGGCGTCTAATTAGGGGTGCCTGAAAAA</canonical>
            <polymorphic>AATTTCGAATTATTCCGATCTTGAAAATTTCGAAATATTCTGAATTTCAAATTTTCGAAATTTTGGAATTTCAGAACAGAAAAACTCAGCGAATTGAAAAAATCAAGTCAAACCATTTTTTGTTTTCAAGTGAACTTTTGTAAATGAAGATGACAATGGCTGGATAGGTAGTAGTCCGAACAAAGTTTGAGCTATGCGGTGGATAAGGGAGAATTGTCCAGCCATATCCATCGAGATAGGCCTGGGTCTTCCTTTCAGCATAAGGTCGCAGATTGCAATTTTGAAAATAAAACTTTGTGTTTCTCTCCAATCGAGATCCACATAAAGTTTTGTGATCTAACAAGAATACGTTTTGGTAATAGTATCATCTAACAGCTCACTCCTTGGTAGACCACGATACCGACAACATCCCAATTTTGTCATGAATTTCATGTTTCGGGACGTCTGGTGTTTGAGTACAACCCACTTGGCATTTCGCTAATTGTAGTCATACATTTCCRGTTTTTTTCAAATTGATGAAGTTGTGTGGGTAGTTCGAAAGAGTTCATTTTCATTGTGAACGTCCATAGAAATACAAATAAAATCAAATTCCGATAATGTAAATTGTCAGTGACAAAAACGTTGGGCATATCTCTTGACACTACTAGACTCCACCAGTAAAACGTCAGCTGAGTGATAAAACGATAGCTTTTATCGTTTTTGAAAAAAGTTTGAAAACAACTGATCAAAAATGGAAAGAACGTTCCGAACACTACCAGTGCAGATACCCATGTGAATGGGGACCTAGGATTCTGGATTGGTAAGAAATTTAGTTTCAAAAAAGGAGAACTCATGGAAAACGTTCTTGAAATAAAAAAACCAAGCTGATCCTATTCTTGCATTACTTTCTTTTTCTATTTTTTTCTCTCCTATTCCGTTTTTTCTCCCATATTTCACTCTTCCATTTTTCTTCCGTTACTCTCAAAACCACAAAGGCGTCTAATTAGGGGTGCCTGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGTAAGAGAAGAGATGATCC</pcr_primer_p1>
		<pcr_primer_p2>ATGGGTATCTGCACTGGTAG</pcr_primer_p2>
		<pcr_amplicon_size>976</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTTTTTCAAATTGATGAAGTTGTGTGGGTAGTTCGAAAGAGTTCATTTTCATTGTGAACGTCCATAGAAATACAAATAAAATCAAATTCCGATAATGTAAATTGTCAGTGACAAAAACGTTGGGCATATCTCTTGACACTACTAGACTCCACCAGTAAAACGTCAGCTGAGTGATAAAACGATAGCTTTTATCGTTTTTGAAAAAAGTTTGAAAACAACTGATCAAAAATGGAAAGAACGTTCCGAACACTACCAGTGCAGATACCCAT</canonical_amplicon>
		<polymorphic_amplicon>CRGTTTTTTTCAAATTGATGAAGTTGTGTGGGTAGTTCGAAAGAGTTCATTTTCATTGTGAACGTCCATAGAAATACAAATAAAATCAAATTCCGATAATGTAAATTGTCAGTGACAAAAACGTTGGGCATATCTCTTGACACTACTAGACTCCACCAGTAAAACGTCAGCTGAGTGATAAAACGATAGCTTTTATCGTTTTTGAAAAAAGTTTGAAAACAACTGATCAAAAATGGAAAGAACGTTCCGAACACTACCAGTGCAGATACCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26064</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>377663</contig_pos>
        <strand>+</strand>
        <context>GAATCTTGAC[A/G]ATACYTTCGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAATTAAAAACATAATCTCTTCGTTGTTTTTGAGTCAAGAATCTTGAC</left_flank>
        <right_flank>ATACTTTCGCTTACAATTTTTTTTGAGTTTTTTAGTTTTTCTTCCAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGAAGACTAAGGACAAGTGAAACCTGATACGTCTGAATAGATAGGGTTAGATGTCTATCAGCTGTTTTGCGATTCTCGAGATGTTTTGAACCTCGAAAAGTGATGTTATATTTGAAAATAGAGCAGGAGAAAATGGGAAAATAATGTAAATTACCGTAAGAGCTGTAATAGAAGGGACCCCCACTGTCACGTTTGAGCCTATTTATCTCGGTTGCTGTTGAAGATACAAAAAAGTTGTCAACTGTTAATTTGTTTATCATAATATCAGAAGTTTTTTATCAATTGATACATTTTTGATATTTTGCATAGGAGCCAAGAAAAGTTATCTCAAACTGGACAGTGTGAGGACCCTTCTATTACCGGTTTTACGGTAATCATGTAAACCTATACAGGAACTTTACGACCGTTTTTAAATATCCTAGAATTTCCTGTAGTCGTGGAAACCGAAAAATTAAAAACATAATCTCTTCGTTGTTTTTGAGTCAAGAATCTTGACAATACTTTCGCTTACAATTTTTTTTGAGTTTTTTAGTTTTTCTTCCAAAAATATAAACATTTTGAAAAAAAAAATAAACAATTGTAGGTCCCATGCCCTTTACAAGGAGAAATGACTAGATTTGATAGAATGAAACTGGAATTTTTTTCAAATAGAAACCAGTGAACCTGTCATTCCAGAATAGAGTACACCTGGGATTTTCTGAATGTCGAAAAGTCCGAGTTTCGAAACTTCGGAATTTCGGAGTTTTCGGAAATTTTTAGCCTTAAAATTTCAAAGTAGGAAGCTCGCTCCATAAAATCCTGGAATATTCCGGTTGGAACTTTCGGAATTCCGACCTATTTTTAAATATTAACTCTCACCAAAAAAAACTAGGCGTTATGTAAAACTTAACCCAAATATTGAAACTCAACTCCCTCTCTTGTCATCTCAATTTCCAAATAAAAGAGAAACTAGTATAAACATACAAATCCAGAAAGAATCTCTCATACAGCTCTTCCT</canonical>
            <polymorphic>AAAAGAAGACTAAGGACAAGTGAAACCTGATACGTCTGAATAGATAGGGTTAGATGTCTATCAGCTGTTTTGCGATTCTCGAGATGTTTTGAACCTCGAAAAGTGATGTTATATTTGAAAATAGAGCAGGAGAAAATGGGAAAATAATGTAAATTACCGTAAGAGCTGTAATAGAAGGGACCCCCACTGTCACGTTTGAGCCTATTTATCTCGGTTGCTGTTGAAGATACAAAAAAGTTGTCAACTGTTAATTTGTTTATCATAATATCAGAAGTTTTTTATCAATTGATACATTTTTGATATTTTGCATAGGAGCCAAGAAAAGTTATCTCAAACTGGACAGTGTGAGGACCCTTCTATTACCGGTTTTACGGTAATCATGTAAACCTATACAGGAACTTTACGACCGTTTTTAAATATCCTAGAATTTCCTGTAGTCGTGGAAACCGAAAAATTAAAAACATAATCTCTTCGTTGTTTTTGAGTCAAGAATCTTGACRATACTTTCGCTTACAATTTTTTTTGAGTTTTTTAGTTTTTCTTCCAAAAATATAAACATTTTGAAAAAAAAAATAAACAATTGTAGGTCCCATGCCCTTTACAAGGAGAAATGACTAGATTTGATAGAATGAAACTGGAATTTTTTTCAAATAGAAACCAGTGAACCTGTCATTCCAGAATAGAGTACACCTGGGATTTTCTGAATGTCGAAAAGTCCGAGTTTCGAAACTTCGGAATTTCGGAGTTTTCGGAAATTTTTAGCCTTAAAATTTCAAAGTAGGAAGCTCGCTCCATAAAATCCTGGAATATTCCGGTTGGAACTTTCGGAATTCCGACCTATTTTTAAATATTAACTCTCACCAAAAAAAACTAGGCGTTATGTAAAACTTAACCCAAATATTGAAACTCAACTCCCTCTCTTGTCATCTCAATTTCCAAATAAAAGAGAAACTAGTATAAACATACAAATCCAGAAAGAATCTCTCATACAGCTCTTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCTAGAATTTCCTGTAGTCGT</pcr_primer_p1>
		<pcr_primer_p2>AGGTTCACTGGTTTCTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCCTAGAATTTCCTGTAGTCGTGGAAACCGAAAAATTAAAAACATAATCTCTTCGTTGTTTTTGAGTCAAGAATCTTGACAATACTTTCGCTTACAATTTTTTTTGAGTTTTTTAGTTTTTCTTCCAAAAATATAAACATTTTGAAAAAAAAAATAAACAATTGTAGGTCCCATGCCCTTTACAAGGAGAAATGACTAGATTTGATAGAATGAAACTGGAATTTTTTTCAAATAGAAACCAGTGAACCT</canonical_amplicon>
		<polymorphic_amplicon>ATCCTAGAATTTCCTGTAGTCGTGGAAACCGAAAAATTAAAAACATAATCTCTTCGTTGTTTTTGAGTCAAGAATCTTGACRATACTTTCGCTTACAATTTTTTTTGAGTTTTTTAGTTTTTCTTCCAAAAATATAAACATTTTGAAAAAAAAAATAAACAATTGTAGGTCCCATGCCCTTTACAAGGAGAAATGACTAGATTTGATAGAATGAAACTGGAATTTTTTTCAAATAGAAACCAGTGAACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26065</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>377668</contig_pos>
        <strand>+</strand>
        <context>TTGACRATAC[C/T]TTCGCTTACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAAAACATAATCTCTTCGTTGTTTTTGAGTCAAGAATCTTGACAATAC</left_flank>
        <right_flank>TTCGCTTACAATTTTTTTTGAGTTTTTTAGTTTTTCTTCCAAAAATATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGACTAAGGACAAGTGAAACCTGATACGTCTGAATAGATAGGGTTAGATGTCTATCAGCTGTTTTGCGATTCTCGAGATGTTTTGAACCTCGAAAAGTGATGTTATATTTGAAAATAGAGCAGGAGAAAATGGGAAAATAATGTAAATTACCGTAAGAGCTGTAATAGAAGGGACCCCCACTGTCACGTTTGAGCCTATTTATCTCGGTTGCTGTTGAAGATACAAAAAAGTTGTCAACTGTTAATTTGTTTATCATAATATCAGAAGTTTTTTATCAATTGATACATTTTTGATATTTTGCATAGGAGCCAAGAAAAGTTATCTCAAACTGGACAGTGTGAGGACCCTTCTATTACCGGTTTTACGGTAATCATGTAAACCTATACAGGAACTTTACGACCGTTTTTAAATATCCTAGAATTTCCTGTAGTCGTGGAAACCGAAAAATTAAAAACATAATCTCTTCGTTGTTTTTGAGTCAAGAATCTTGACAATACTTTCGCTTACAATTTTTTTTGAGTTTTTTAGTTTTTCTTCCAAAAATATAAACATTTTGAAAAAAAAAATAAACAATTGTAGGTCCCATGCCCTTTACAAGGAGAAATGACTAGATTTGATAGAATGAAACTGGAATTTTTTTCAAATAGAAACCAGTGAACCTGTCATTCCAGAATAGAGTACACCTGGGATTTTCTGAATGTCGAAAAGTCCGAGTTTCGAAACTTCGGAATTTCGGAGTTTTCGGAAATTTTTAGCCTTAAAATTTCAAAGTAGGAAGCTCGCTCCATAAAATCCTGGAATATTCCGGTTGGAACTTTCGGAATTCCGACCTATTTTTAAATATTAACTCTCACCAAAAAAAACTAGGCGTTATGTAAAACTTAACCCAAATATTGAAACTCAACTCCCTCTCTTGTCATCTCAATTTCCAAATAAAAGAGAAACTAGTATAAACATACAAATCCAGAAAGAATCTCTCATACAGCTCTTCCTTTTTT</canonical>
            <polymorphic>AAGACTAAGGACAAGTGAAACCTGATACGTCTGAATAGATAGGGTTAGATGTCTATCAGCTGTTTTGCGATTCTCGAGATGTTTTGAACCTCGAAAAGTGATGTTATATTTGAAAATAGAGCAGGAGAAAATGGGAAAATAATGTAAATTACCGTAAGAGCTGTAATAGAAGGGACCCCCACTGTCACGTTTGAGCCTATTTATCTCGGTTGCTGTTGAAGATACAAAAAAGTTGTCAACTGTTAATTTGTTTATCATAATATCAGAAGTTTTTTATCAATTGATACATTTTTGATATTTTGCATAGGAGCCAAGAAAAGTTATCTCAAACTGGACAGTGTGAGGACCCTTCTATTACCGGTTTTACGGTAATCATGTAAACCTATACAGGAACTTTACGACCGTTTTTAAATATCCTAGAATTTCCTGTAGTCGTGGAAACCGAAAAATTAAAAACATAATCTCTTCGTTGTTTTTGAGTCAAGAATCTTGACAATACYTTCGCTTACAATTTTTTTTGAGTTTTTTAGTTTTTCTTCCAAAAATATAAACATTTTGAAAAAAAAAATAAACAATTGTAGGTCCCATGCCCTTTACAAGGAGAAATGACTAGATTTGATAGAATGAAACTGGAATTTTTTTCAAATAGAAACCAGTGAACCTGTCATTCCAGAATAGAGTACACCTGGGATTTTCTGAATGTCGAAAAGTCCGAGTTTCGAAACTTCGGAATTTCGGAGTTTTCGGAAATTTTTAGCCTTAAAATTTCAAAGTAGGAAGCTCGCTCCATAAAATCCTGGAATATTCCGGTTGGAACTTTCGGAATTCCGACCTATTTTTAAATATTAACTCTCACCAAAAAAAACTAGGCGTTATGTAAAACTTAACCCAAATATTGAAACTCAACTCCCTCTCTTGTCATCTCAATTTCCAAATAAAAGAGAAACTAGTATAAACATACAAATCCAGAAAGAATCTCTCATACAGCTCTTCCTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCTAGAATTTCCTGTAGTCGT</pcr_primer_p1>
		<pcr_primer_p2>AGGTTCACTGGTTTCTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCCTAGAATTTCCTGTAGTCGTGGAAACCGAAAAATTAAAAACATAATCTCTTCGTTGTTTTTGAGTCAAGAATCTTGACAATACTTTCGCTTACAATTTTTTTTGAGTTTTTTAGTTTTTCTTCCAAAAATATAAACATTTTGAAAAAAAAAATAAACAATTGTAGGTCCCATGCCCTTTACAAGGAGAAATGACTAGATTTGATAGAATGAAACTGGAATTTTTTTCAAATAGAAACCAGTGAACCT</canonical_amplicon>
		<polymorphic_amplicon>ATCCTAGAATTTCCTGTAGTCGTGGAAACCGAAAAATTAAAAACATAATCTCTTCGTTGTTTTTGAGTCAAGAATCTTGACAATACYTTCGCTTACAATTTTTTTTGAGTTTTTTAGTTTTTCTTCCAAAAATATAAACATTTTGAAAAAAAAAATAAACAATTGTAGGTCCCATGCCCTTTACAAGGAGAAATGACTAGATTTGATAGAATGAAACTGGAATTTTTTTCAAATAGAAACCAGTGAACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26066</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>378458</contig_pos>
        <strand>+</strand>
        <context>AGATTTTCAG[A/T]TTTCTTAAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAATTTGTTGTTTGTGGATAACGAAAAATCGATTGAGAGGAGATTTTCAG</left_flank>
        <right_flank>TTTCTTAAGGTATGTTCTTAAGGTTAAATTCTTAAGGTATGTCACCTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATCCTGGAATATTCCGGTTGGAACTTTCGGAATTCCGACCTATTTTTAAATATTAACTCTCACCAAAAAAAACTAGGCGTTATGTAAAACTTAACCCAAATATTGAAACTCAACTCCCTCTCTTGTCATCTCAATTTCCAAATAAAAGAGAAACTAGTATAAACATACAAATCCAGAAAGAATCTCTCATACAGCTCTTCCTTTTTTCCTACAACTACAAATAATTATAATAATCATATTAGGTTCCCCTCTCCACGCCTACAACATCCTCCTCCCCTTTTTTCTCTTGAATTCCATGTCCAATTTAGAATGGGAATGAATAGAAAAATACACACACACACATAGAGTTTTTGGAGCTGAAAAGCGAATTATAACGATGAATTCTTGAAGGCGGAGGGGTGTCTCTCTGGGACACATATTTACTAGACATACTACATTTCTCTATATAATTTGTTGTTTGTGGATAACGAAAAATCGATTGAGAGGAGATTTTCAGTTTTCTTAAGGTATGTTCTTAAGGTTAAATTCTTAAGGTATGTCACCTTCTATGAGAAAATGGGAAAAGAAAGTTATAGGGTTGCGCAAAAGAAAAGGAAAAAGTTATAAATCAAAATGGATAATAAATCAAAAATTGTCAGATATCAAACTCACGAAATCTTAATTAGTAGGTGCACTTTGAAGAAAATGATCAAACTACTCTCTCACGGGGAGGGCAAGTAACAAAAAAGGCAGAAAGAAAAAGTGTCTCTGTGGGATAAAGAGAAGTTTTGCCGTTTTCCGGTCATTTCCGGTTATCAAATCTCTCTCATGTTAACGTATGAGAAAAAAGTGGATATTTTTCGATGGATTTTCTTAAAGGAGGGGAGGAGGAGAGAGCAGAAAAAAAACCGTGTCGAAATTTTGTTCATATAAGCCCCTCGAGAGATTGAACTCATGGGACGATTATTGGAGGTGCGGCGTCGCTACCGACTGAGCCACGGGGGCGAAGCTAAAGTGG</canonical>
            <polymorphic>AAAATCCTGGAATATTCCGGTTGGAACTTTCGGAATTCCGACCTATTTTTAAATATTAACTCTCACCAAAAAAAACTAGGCGTTATGTAAAACTTAACCCAAATATTGAAACTCAACTCCCTCTCTTGTCATCTCAATTTCCAAATAAAAGAGAAACTAGTATAAACATACAAATCCAGAAAGAATCTCTCATACAGCTCTTCCTTTTTTCCTACAACTACAAATAATTATAATAATCATATTAGGTTCCCCTCTCCACGCCTACAACATCCTCCTCCCCTTTTTTCTCTTGAATTCCATGTCCAATTTAGAATGGGAATGAATAGAAAAATACACACACACACATAGAGTTTTTGGAGCTGAAAAGCGAATTATAACGATGAATTCTTGAAGGCGGAGGGGTGTCTCTCTGGGACACATATTTACTAGACATACTACATTTCTCTATATAATTTGTTGTTTGTGGATAACGAAAAATCGATTGAGAGGAGATTTTCAGWTTTCTTAAGGTATGTTCTTAAGGTTAAATTCTTAAGGTATGTCACCTTCTATGAGAAAATGGGAAAAGAAAGTTATAGGGTTGCGCAAAAGAAAAGGAAAAAGTTATAAATCAAAATGGATAATAAATCAAAAATTGTCAGATATCAAACTCACGAAATCTTAATTAGTAGGTGCACTTTGAAGAAAATGATCAAACTACTCTCTCACGGGGAGGGCAAGTAACAAAAAAGGCAGAAAGAAAAAGTGTCTCTGTGGGATAAAGAGAAGTTTTGCCGTTTTCCGGTCATTTCCGGTTATCAAATCTCTCTCATGTTAACGTATGAGAAAAAAGTGGATATTTTTCGATGGATTTTCTTAAAGGAGGGGAGGAGGAGAGAGCAGAAAAAAAACCGTGTCGAAATTTTGTTCATATAAGCCCCTCGAGAGATTGAACTCATGGGACGATTATTGGAGGTGCGGCGTCGCTACCGACTGAGCCACGGGGGCGAAGCTAAAGTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAATGGGAATGAATAGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCATAGAAGGTGACATACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGAATGGGAATGAATAGAAAAATACACACACACACATAGAGTTTTTGGAGCTGAAAAGCGAATTATAACGATGAATTCTTGAAGGCGGAGGGGTGTCTCTCTGGGACACATATTTACTAGACATACTACATTTCTCTATATAATTTGTTGTTTGTGGATAACGAAAAATCGATTGAGAGGAGATTTTCAGTTTTCTTAAGGTATGTTCTTAAGGTTAAATTCTTAAGGTATGTCACCTTCTATGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>AGAATGGGAATGAATAGAAAAATACACACACACACATAGAGTTTTTGGAGCTGAAAAGCGAATTATAACGATGAATTCTTGAAGGCGGAGGGGTGTCTCTCTGGGACACATATTTACTAGACATACTACATTTCTCTATATAATTTGTTGTTTGTGGATAACGAAAAATCGATTGAGAGGAGATTTTCAGWTTTCTTAAGGTATGTTCTTAAGGTTAAATTCTTAAGGTATGTCACCTTCTATGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26067</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>380994</contig_pos>
        <strand>+</strand>
        <context>ACTTCGAAGG[C/T]TTTTTTTGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTGTCGGGTATGTTCGGAACTGTTTTGAAATTTCGAAAACTTCGAAGG</left_flank>
        <right_flank>TTTTTTTGGGAATTAGTGTTTTTTGGACAACGGCAGGTCAAAAAAAATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATATTCAGAGAGAGGAAAAGAGCGTTTGACATCTGCTGGAGAAAACGGAGCTAACCGATTAGGAGCTAATATTATAGTGGTAGAAAAAAAGGAGGAGCTCTCTCTGGTGGGTGGGAAGAAGTGGAAAAACGGCAAGAAAGAGGAGACGAATTGCTGGGAAAATGTGAGAAATTGTGTGTTTATTTGTGGTTGTGAATCTGGTAACAACAACAAATAAATGTCTAGTTCGAAATTCTAGTTACCTAGGTGATCTTATACTTGGGAATTTCCAACATGGGAAAAGTTTCGAGATAGTGTTGTAGAGATAAAAAAGCAATAAAAAGACATCTGGGGACATCCTATGATGTTCTGCATAAGGATACAAATACCAGTTTCAGATAATTTTCTAACGTCATGAATTCAAAAAAGACTGGATGCTCTGTTTCTCGAAGAATTCCGTCGACATGTTTCTGTCGGGTATGTTCGGAACTGTTTTGAAATTTCGAAAACTTCGAAGGTTTTTTTTGGGAATTAGTGTTTTTTGGACAACGGCAGGTCAAAAAAAATATCAAAAAGTTGTCAACTCATAAATTGTTTAATAAAATATCCCAATAATTTATCAGTTGACACATTTTCATATCTCTTATAGGAATGAAAGTAGCGGAGCTCAAACTTTAAAGTGTGAGGGACCATCTATTACTGTTCTATGAAATTTTCTTTTTGAATTTTCGAAGTCTTCTTGTTAATTTTTCATCAATTTTAGGCGCTTTTATGATGGGAAAATAAGATTTTTATTATACAGTATAATTGTTCCCCAAGTTTTGAAAATCGGATTTTCCCGAAATTCCGATTTTCCAAAACTTTCAAAATCGCAATTTCCGACATTCCGAACATTCCTGGTTTCTATAAAAGAGTTCTTGATGATAATATCGCGTAAAGACTATGTATACCGTATAGCCTTCAATGAAGGACCCCCTGATTTTGAACTTTGAACCCATTAATCTTGGTTCTGGTCAAAT</canonical>
            <polymorphic>AGATATTCAGAGAGAGGAAAAGAGCGTTTGACATCTGCTGGAGAAAACGGAGCTAACCGATTAGGAGCTAATATTATAGTGGTAGAAAAAAAGGAGGAGCTCTCTCTGGTGGGTGGGAAGAAGTGGAAAAACGGCAAGAAAGAGGAGACGAATTGCTGGGAAAATGTGAGAAATTGTGTGTTTATTTGTGGTTGTGAATCTGGTAACAACAACAAATAAATGTCTAGTTCGAAATTCTAGTTACCTAGGTGATCTTATACTTGGGAATTTCCAACATGGGAAAAGTTTCGAGATAGTGTTGTAGAGATAAAAAAGCAATAAAAAGACATCTGGGGACATCCTATGATGTTCTGCATAAGGATACAAATACCAGTTTCAGATAATTTTCTAACGTCATGAATTCAAAAAAGACTGGATGCTCTGTTTCTCGAAGAATTCCGTCGACATGTTTCTGTCGGGTATGTTCGGAACTGTTTTGAAATTTCGAAAACTTCGAAGGYTTTTTTTGGGAATTAGTGTTTTTTGGACAACGGCAGGTCAAAAAAAATATCAAAAAGTTGTCAACTCATAAATTGTTTAATAAAATATCCCAATAATTTATCAGTTGACACATTTTCATATCTCTTATAGGAATGAAAGTAGCGGAGCTCAAACTTTAAAGTGTGAGGGACCATCTATTACTGTTCTATGAAATTTTCTTTTTGAATTTTCGAAGTCTTCTTGTTAATTTTTCATCAATTTTAGGCGCTTTTATGATGGGAAAATAAGATTTTTATTATACAGTATAATTGTTCCCCAAGTTTTGAAAATCGGATTTTCCCGAAATTCCGATTTTCCAAAACTTTCAAAATCGCAATTTCCGACATTCCGAACATTCCTGGTTTCTATAAAAGAGTTCTTGATGATAATATCGCGTAAAGACTATGTATACCGTATAGCCTTCAATGAAGGACCCCCTGATTTTGAACTTTGAACCCATTAATCTTGGTTCTGGTCAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTCTGTCGGGTATGTTC</pcr_primer_p1>
		<pcr_primer_p2>CGATATTATCATCAAGAACTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>467</pcr_amplicon_size>
		<canonical_amplicon>TGTTTCTGTCGGGTATGTTCGGAACTGTTTTGAAATTTCGAAAACTTCGAAGGTTTTTTTTGGGAATTAGTGTTTTTTGGACAACGGCAGGTCAAAAAAAATATCAAAAAGTTGTCAACTCATAAATTGTTTAATAAAATATCCCAATAATTTATCAGTTGACACATTTTCATATCTCTTATAGGAATGAAAGTAGCGGAGCTCAAACTTTAAAGTGTGAGGGACCATCTATTACTGTTCTATGAAATTTTCTTTTTGAATTTTCGAAGTCTTCTTGTTAATTTTTCATCAATTTTAGGCGCTTTTATGATGGGAAAATAAGATTTTTATTATACAGTATAATTGTTCCCCAAGTTTTGAAAATCGGATTTTCCCGAAATTCCGATTTTCCAAAACTTTCAAAATCGCAATTTCCGACATTCCGAACATTCCTGGTTTCTATAAAAGAGTTCTTGATGATAATATCG</canonical_amplicon>
		<polymorphic_amplicon>TGTTTCTGTCGGGTATGTTCGGAACTGTTTTGAAATTTCGAAAACTTCGAAGGYTTTTTTTGGGAATTAGTGTTTTTTGGACAACGGCAGGTCAAAAAAAATATCAAAAAGTTGTCAACTCATAAATTGTTTAATAAAATATCCCAATAATTTATCAGTTGACACATTTTCATATCTCTTATAGGAATGAAAGTAGCGGAGCTCAAACTTTAAAGTGTGAGGGACCATCTATTACTGTTCTATGAAATTTTCTTTTTGAATTTTCGAAGTCTTCTTGTTAATTTTTCATCAATTTTAGGCGCTTTTATGATGGGAAAATAAGATTTTTATTATACAGTATAATTGTTCCCCAAGTTTTGAAAATCGGATTTTCCCGAAATTCCGATTTTCCAAAACTTTCAAAATCGCAATTTCCGACATTCCGAACATTCCTGGTTTCTATAAAAGAGTTCTTGATGATAATATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26068</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>450499</contig_pos>
        <strand>+</strand>
        <context>GATTGTCGCG[C/T]CTAGAGTTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGGGTCTCGAAAGGGTCACCCTGTCACAATTGGTTCCAGATTGTCGCG</left_flank>
        <right_flank>CTAGAGTTACAGGTATGTCGCCGAAATTTCGAAAAAAAAATTTTGATAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGGNGGCCAANTGTGAGCTTTCTAGTCCCAGGCCAGCGCACGAAAATTTCACATCTGAAGTTTTCCGGGTTTTAAAAATATTTTTCTAAAATTTCAGCAAAAACTATTTCTGAAAATTGAAAAAAAAATAACGATTCTATAAGAAAACGGTTGCAAATTAAAAAAAACCGAAAAAATTGAACACCAAATTCTCGCGCGCTGGCCGCGGACTAGAAAACTCACACTCGGTCGCCAGCCACCGGATACCAATTCGCGTTTTCGATGCGGTTTTCTCAATGACAGATTTTTTTTTGGAGTTTTTTTCAAAATTTGTATGTGAACCTATGAAAAAATGAATAATTTCCGCAGTATAGGGTCTTTAAAAAAAGAAAATGTCTAAAAATATTATATCTATTTCTAAAATTTCAGGCTGGACCAAACTCTTGGAAAACCAGGTCAATACGATGGGAAAGGGTCTCGAAAGGGTCACCCTGTCACAATTGGTTCCAGATTGTCGCGTCTAGAGTTACAGGTATGTCGCCGAAATTTCGAAAAAAAAATTTTGATAAGAAATTGAAAATTGATAAGCTTTTATTCGAATTTCACACCTTTTCTGCCCGACCAAATGTTGCGGCATTCGAAAGATTGCGACTTTAGACTTCATGGAGTTCATTGAATCAATTTTTGGGCGCTGAAACACTTCTGACAGGGACGTCAAACTTATTATTTTCCAGATGTCGAGTCTCGATCGAAAAGTAGAGTCTAGTAATCGAACACTAAGTGCTCTGTATCGATTGATGGTCGACAGAAACTCGCTGACGATTTCACCGTCACCACCGGCATTGATGAGTAGACCAGTGTCACCTGCTAACTGTTTATCACCGAGAGATCAACTCTCGCCGACGAGTATCAGCAGCCAAAGATCGGGATCTCCGAGCTATACTTTGGATCCAAATGGTGGATGGCATTAAGATACCGTGAACACTTGCTACCTAAACCGTCTACTTTGAGTTTATATAT</canonical>
            <polymorphic>CTGGNGGCCAANTGTGAGCTTTCTAGTCCCAGGCCAGCGCACGAAAATTTCACATCTGAAGTTTTCCGGGTTTTAAAAATATTTTTCTAAAATTTCAGCAAAAACTATTTCTGAAAATTGAAAAAAAAATAACGATTCTATAAGAAAACGGTTGCAAATTAAAAAAAACCGAAAAAATTGAACACCAAATTCTCGCGCGCTGGCCGCGGACTAGAAAACTCACACTCGGTCGCCAGCCACCGGATACCAATTCGCGTTTTCGATGCGGTTTTCTCAATGACAGATTTTTTTTTGGAGTTTTTTTCAAAATTTGTATGTGAACCTATGAAAAAATGAATAATTTCCGCAGTATAGGGTCTTTAAAAAAAGAAAATGTCTAAAAATATTATATCTATTTCTAAAATTTCAGGCTGGACCAAACTCTTGGAAAACCAGGTCAATACGATGGGAAAGGGTCTCGAAAGGGTCACCCTGTCACAATTGGTTCCAGATTGTCGCGYCTAGAGTTACAGGTATGTCGCCGAAATTTCGAAAAAAAAATTTTGATAAGAAATTGAAAATTGATAAGCTTTTATTCGAATTTCACACCTTTTCTGCCCGACCAAATGTTGCGGCATTCGAAAGATTGCGACTTTAGACTTCATGGAGTTCATTGAATCAATTTTTGGGCGCTGAAACACTTCTGACAGGGACGTCAAACTTATTATTTTCCAGATGTCGAGTCTCGATCGAAAAGTAGAGTCTAGTAATCGAACACTAAGTGCTCTGTATCGATTGATGGTCGACAGAAACTCGCTGACGATTTCACCGTCACCACCGGCATTGATGAGTAGACCAGTGTCACCTGCTAACTGTTTATCACCGAGAGATCAACTCTCGCCGACGAGTATCAGCAGCCAAAGATCGGGATCTCCGAGCTATACTTTGGATCCAAATGGTGGATGGCATTAAGATACCGTGAACACTTGCTACCTAAACCGTCTACTTTGAGTTTATATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>457 210 181 95 30 14 13</canonical_bands>
                <polymorphic_bands>457 224 181 95 30 13</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGAATAATTTCCGCAGTATAG</pcr_primer_p1>
		<pcr_primer_p2>TTCGAATAAAAGCTTATCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATGAATAATTTCCGCAGTATAGGGTCTTTAAAAAAAGAAAATGTCTAAAAATATTATATCTATTTCTAAAATTTCAGGCTGGACCAAACTCTTGGAAAACCAGGTCAATACGATGGGAAAGGGTCTCGAAAGGGTCACCCTGTCACAATTGGTTCCAGATTGTCGCGTCTAGAGTTACAGGTATGTCGCCGAAATTTCGAAAAAAAAATTTTGATAAGAAATTGAAAATTGATAAGCTTTTATTCGAA</canonical_amplicon>
		<polymorphic_amplicon>AATGAATAATTTCCGCAGTATAGGGTCTTTAAAAAAAGAAAATGTCTAAAAATATTATATCTATTTCTAAAATTTCAGGCTGGACCAAACTCTTGGAAAACCAGGTCAATACGATGGGAAAGGGTCTCGAAAGGGTCACCCTGTCACAATTGGTTCCAGATTGTCGCGYCTAGAGTTACAGGTATGTCGCCGAAATTTCGAAAAAAAAATTTTGATAAGAAATTGAAAATTGATAAGCTTTTATTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26069</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>450531</contig_pos>
        <strand>+</strand>
        <context>CGAAATTTCG[A/T]AAAAAAAWTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGGTTCCAGATTGTCGCGTCTAGAGTTACAGGTATGTCGCCGAAATTTCG</left_flank>
        <right_flank>AAAAAAAATTTTGATAAGAAATTGAAAATTGATAAGCTTTTATTCGAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCAGCGCACGAAAATTTCACATCTGAAGTTTTCCGGGTTTTAAAAATATTTTTCTAAAATTTCAGCAAAAACTATTTCTGAAAATTGAAAAAAAAATAACGATTCTATAAGAAAACGGTTGCAAATTAAAAAAAACCGAAAAAATTGAACACCAAATTCTCGCGCGCTGGCCGCGGACTAGAAAACTCACACTCGGTCGCCAGCCACCGGATACCAATTCGCGTTTTCGATGCGGTTTTCTCAATGACAGATTTTTTTTTGGAGTTTTTTTCAAAATTTGTATGTGAACCTATGAAAAAATGAATAATTTCCGCAGTATAGGGTCTTTAAAAAAAGAAAATGTCTAAAAATATTATATCTATTTCTAAAATTTCAGGCTGGACCAAACTCTTGGAAAACCAGGTCAATACGATGGGAAAGGGTCTCGAAAGGGTCACCCTGTCACAATTGGTTCCAGATTGTCGCGTCTAGAGTTACAGGTATGTCGCCGAAATTTCGAAAAAAAAATTTTGATAAGAAATTGAAAATTGATAAGCTTTTATTCGAATTTCACACCTTTTCTGCCCGACCAAATGTTGCGGCATTCGAAAGATTGCGACTTTAGACTTCATGGAGTTCATTGAATCAATTTTTGGGCGCTGAAACACTTCTGACAGGGACGTCAAACTTATTATTTTCCAGATGTCGAGTCTCGATCGAAAAGTAGAGTCTAGTAATCGAACACTAAGTGCTCTGTATCGATTGATGGTCGACAGAAACTCGCTGACGATTTCACCGTCACCACCGGCATTGATGAGTAGACCAGTGTCACCTGCTAACTGTTTATCACCGAGAGATCAACTCTCGCCGACGAGTATCAGCAGCCAAAGATCGGGATCTCCGAGCTATACTTTGGATCCAAATGGTGGATGGCATTAAGATACCGTGAACACTTGCTACCTAAACCGTCTACTTTGAGTTTATATATATCGGTTCCGGTAAAAGAAATCAAAAAGCGGT</canonical>
            <polymorphic>GCCAGCGCACGAAAATTTCACATCTGAAGTTTTCCGGGTTTTAAAAATATTTTTCTAAAATTTCAGCAAAAACTATTTCTGAAAATTGAAAAAAAAATAACGATTCTATAAGAAAACGGTTGCAAATTAAAAAAAACCGAAAAAATTGAACACCAAATTCTCGCGCGCTGGCCGCGGACTAGAAAACTCACACTCGGTCGCCAGCCACCGGATACCAATTCGCGTTTTCGATGCGGTTTTCTCAATGACAGATTTTTTTTTGGAGTTTTTTTCAAAATTTGTATGTGAACCTATGAAAAAATGAATAATTTCCGCAGTATAGGGTCTTTAAAAAAAGAAAATGTCTAAAAATATTATATCTATTTCTAAAATTTCAGGCTGGACCAAACTCTTGGAAAACCAGGTCAATACGATGGGAAAGGGTCTCGAAAGGGTCACCCTGTCACAATTGGTTCCAGATTGTCGCGTCTAGAGTTACAGGTATGTCGCCGAAATTTCGWAAAAAAAATTTTGATAAGAAATTGAAAATTGATAAGCTTTTATTCGAATTTCACACCTTTTCTGCCCGACCAAATGTTGCGGCATTCGAAAGATTGCGACTTTAGACTTCATGGAGTTCATTGAATCAATTTTTGGGCGCTGAAACACTTCTGACAGGGACGTCAAACTTATTATTTTCCAGATGTCGAGTCTCGATCGAAAAGTAGAGTCTAGTAATCGAACACTAAGTGCTCTGTATCGATTGATGGTCGACAGAAACTCGCTGACGATTTCACCGTCACCACCGGCATTGATGAGTAGACCAGTGTCACCTGCTAACTGTTTATCACCGAGAGATCAACTCTCGCCGACGAGTATCAGCAGCCAAAGATCGGGATCTCCGAGCTATACTTTGGATCCAAATGGTGGATGGCATTAAGATACCGTGAACACTTGCTACCTAAACCGTCTACTTTGAGTTTATATATATCGGTTCCGGTAAAAGAAATCAAAAAGCGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>497 414 47 42</canonical_bands>
                <polymorphic_bands>544 414 42</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>249 229 198 100 71 47 42 21 21 11 7 4</canonical_bands>
                <polymorphic_bands>249 229 198 118 100 42 21 21 11 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTAAAATTTCAGGCTGGAC</pcr_primer_p1>
		<pcr_primer_p2>ATGAAGTCTAAAGTCGCAATCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCTAAAATTTCAGGCTGGACCAAACTCTTGGAAAACCAGGTCAATACGATGGGAAAGGGTCTCGAAAGGGTCACCCTGTCACAATTGGTTCCAGATTGTCGCGTCTAGAGTTACAGGTATGTCGCCGAAATTTCGAAAAAAAAATTTTGATAAGAAATTGAAAATTGATAAGCTTTTATTCGAATTTCACACCTTTTCTGCCCGACCAAATGTTGCGGCATTCGAAAGATTGCGACTTTAGACTTCAT</canonical_amplicon>
		<polymorphic_amplicon>TTCTAAAATTTCAGGCTGGACCAAACTCTTGGAAAACCAGGTCAATACGATGGGAAAGGGTCTCGAAAGGGTCACCCTGTCACAATTGGTTCCAGATTGTCGCGTCTAGAGTTACAGGTATGTCGCCGAAATTTCGWAAAAAAAATTTTGATAAGAAATTGAAAATTGATAAGCTTTTATTCGAATTTCACACCTTTTCTGCCCGACCAAATGTTGCGGCATTCGAAAGATTGCGACTTTAGACTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26070</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>450539</contig_pos>
        <strand></strand>
        <context>CGWAAAAAAA[A/T]TTTTGATAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATTGTCGCGTCTAGAGTTACAGGTATGTCGCCGAAATTTCGAAAAAAAA</left_flank>
        <right_flank>TTTTGATAAGAAATTGAAAATTGATAAGCTTTTATTCGAATTTCACACCT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGAAAATTTCACATCTGAAGTTTTCCGGGTTTTAAAAATATTTTTCTAAAATTTCAGCAAAAACTATTTCTGAAAATTGAAAAAAAAATAACGATTCTATAAGAAAACGGTTGCAAATTAAAAAAAACCGAAAAAATTGAACACCAAATTCTCGCGCGCTGGCCGCGGACTAGAAAACTCACACTCGGTCGCCAGCCACCGGATACCAATTCGCGTTTTCGATGCGGTTTTCTCAATGACAGATTTTTTTTTGGAGTTTTTTTCAAAATTTGTATGTGAACCTATGAAAAAATGAATAATTTCCGCAGTATAGGGTCTTTAAAAAAAGAAAATGTCTAAAAATATTATATCTATTTCTAAAATTTCAGGCTGGACCAAACTCTTGGAAAACCAGGTCAATACGATGGGAAAGGGTCTCGAAAGGGTCACCCTGTCACAATTGGTTCCAGATTGTCGCGTCTAGAGTTACAGGTATGTCGCCGAAATTTCGAAAAAAAAATTTTGATAAGAAATTGAAAATTGATAAGCTTTTATTCGAATTTCACACCTTTTCTGCCCGACCAAATGTTGCGGCATTCGAAAGATTGCGACTTTAGACTTCATGGAGTTCATTGAATCAATTTTTGGGCGCTGAAACACTTCTGACAGGGACGTCAAACTTATTATTTTCCAGATGTCGAGTCTCGATCGAAAAGTAGAGTCTAGTAATCGAACACTAAGTGCTCTGTATCGATTGATGGTCGACAGAAACTCGCTGACGATTTCACCGTCACCACCGGCATTGATGAGTAGACCAGTGTCACCTGCTAACTGTTTATCACCGAGAGATCAACTCTCGCCGACGAGTATCAGCAGCCAAAGATCGGGATCTCCGAGCTATACTTTGGATCCAAATGGTGGATGGCATTAAGATACCGTGAACACTTGCTACCTAAACCGTCTACTTTGAGTTTATATATATCGGTTCCGGTAAAAGAAATCAAAAAGCGGTCAAGTGAA</canonical>
            <polymorphic>ACGAAAATTTCACATCTGAAGTTTTCCGGGTTTTAAAAATATTTTTCTAAAATTTCAGCAAAAACTATTTCTGAAAATTGAAAAAAAAATAACGATTCTATAAGAAAACGGTTGCAAATTAAAAAAAACCGAAAAAATTGAACACCAAATTCTCGCGCGCTGGCCGCGGACTAGAAAACTCACACTCGGTCGCCAGCCACCGGATACCAATTCGCGTTTTCGATGCGGTTTTCTCAATGACAGATTTTTTTTTGGAGTTTTTTTCAAAATTTGTATGTGAACCTATGAAAAAATGAATAATTTCCGCAGTATAGGGTCTTTAAAAAAAGAAAATGTCTAAAAATATTATATCTATTTCTAAAATTTCAGGCTGGACCAAACTCTTGGAAAACCAGGTCAATACGATGGGAAAGGGTCTCGAAAGGGTCACCCTGTCACAATTGGTTCCAGATTGTCGCGTCTAGAGTTACAGGTATGTCGCCGAAATTTCGAAAAAAAAWTTTTGATAAGAAATTGAAAATTGATAAGCTTTTATTCGAATTTCACACCTTTTCTGCCCGACCAAATGTTGCGGCATTCGAAAGATTGCGACTTTAGACTTCATGGAGTTCATTGAATCAATTTTTGGGCGCTGAAACACTTCTGACAGGGACGTCAAACTTATTATTTTCCAGATGTCGAGTCTCGATCGAAAAGTAGAGTCTAGTAATCGAACACTAAGTGCTCTGTATCGATTGATGGTCGACAGAAACTCGCTGACGATTTCACCGTCACCACCGGCATTGATGAGTAGACCAGTGTCACCTGCTAACTGTTTATCACCGAGAGATCAACTCTCGCCGACGAGTATCAGCAGCCAAAGATCGGGATCTCCGAGCTATACTTTGGATCCAAATGGTGGATGGCATTAAGATACCGTGAACACTTGCTACCTAAACCGTCTACTTTGAGTTTATATATATCGGTTCCGGTAAAAGAAATCAAAAAGCGGTCAAGTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>462 123 120 97 94 45 40 14 5</canonical_bands>
                <polymorphic_bands>462 123 120 97 94 54 45 5</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>381 81 77 63 61 59 46 45 41 31 25 20 19 14 13 12 7 5</canonical_bands>
                <polymorphic_bands>381 81 77 63 61 59 46 45 41 31 27 25 20 19 12 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTAAAATTTCAGGCTGGAC</pcr_primer_p1>
		<pcr_primer_p2>ATGAAGTCTAAAGTCGCAATCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCTAAAATTTCAGGCTGGACCAAACTCTTGGAAAACCAGGTCAATACGATGGGAAAGGGTCTCGAAAGGGTCACCCTGTCACAATTGGTTCCAGATTGTCGCGTCTAGAGTTACAGGTATGTCGCCGAAATTTCGAAAAAAAAATTTTGATAAGAAATTGAAAATTGATAAGCTTTTATTCGAATTTCACACCTTTTCTGCCCGACCAAATGTTGCGGCATTCGAAAGATTGCGACTTTAGACTTCAT</canonical_amplicon>
		<polymorphic_amplicon>TTCTAAAATTTCAGGCTGGACCAAACTCTTGGAAAACCAGGTCAATACGATGGGAAAGGGTCTCGAAAGGGTCACCCTGTCACAATTGGTTCCAGATTGTCGCGTCTAGAGTTACAGGTATGTCGCCGAAATTTCGAAAAAAAAWTTTTGATAAGAAATTGAAAATTGATAAGCTTTTATTCGAATTTCACACCTTTTCTGCCCGACCAAATGTTGCGGCATTCGAAAGATTGCGACTTTAGACTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26071</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>450614</contig_pos>
        <strand>+</strand>
        <context>AATGTTGCGG[C/T]ATTCGAAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAGCTTTTATTCGAATTTCACACCTTTTCTGCCCGACCAAATGTTGCGG</left_flank>
        <right_flank>ATTCGAAAGATTGCGACTTTAGACTTCATGGAGTTCATTGAATCAATTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGAAAAAAAAATAACGATTCTATAAGAAAACGGTTGCAAATTAAAAAAAACCGAAAAAATTGAACACCAAATTCTCGCGCGCTGGCCGCGGACTAGAAAACTCACACTCGGTCGCCAGCCACCGGATACCAATTCGCGTTTTCGATGCGGTTTTCTCAATGACAGATTTTTTTTTGGAGTTTTTTTCAAAATTTGTATGTGAACCTATGAAAAAATGAATAATTTCCGCAGTATAGGGTCTTTAAAAAAAGAAAATGTCTAAAAATATTATATCTATTTCTAAAATTTCAGGCTGGACCAAACTCTTGGAAAACCAGGTCAATACGATGGGAAAGGGTCTCGAAAGGGTCACCCTGTCACAATTGGTTCCAGATTGTCGCGTCTAGAGTTACAGGTATGTCGCCGAAATTTCGAAAAAAAAATTTTGATAAGAAATTGAAAATTGATAAGCTTTTATTCGAATTTCACACCTTTTCTGCCCGACCAAATGTTGCGGCATTCGAAAGATTGCGACTTTAGACTTCATGGAGTTCATTGAATCAATTTTTGGGCGCTGAAACACTTCTGACAGGGACGTCAAACTTATTATTTTCCAGATGTCGAGTCTCGATCGAAAAGTAGAGTCTAGTAATCGAACACTAAGTGCTCTGTATCGATTGATGGTCGACAGAAACTCGCTGACGATTTCACCGTCACCACCGGCATTGATGAGTAGACCAGTGTCACCTGCTAACTGTTTATCACCGAGAGATCAACTCTCGCCGACGAGTATCAGCAGCCAAAGATCGGGATCTCCGAGCTATACTTTGGATCCAAATGGTGGATGGCATTAAGATACCGTGAACACTTGCTACCTAAACCGTCTACTTTGAGTTTATATATATCGGTTCCGGTAAAAGAAATCAAAAAGCGGTCAAGTGAAAAAATATTTTTGATATTATAAGAAATATTTTGTAAGTTGACCACTTTTTGATAATATCAAAAAGATATTATCTTT</canonical>
            <polymorphic>AATTGAAAAAAAAATAACGATTCTATAAGAAAACGGTTGCAAATTAAAAAAAACCGAAAAAATTGAACACCAAATTCTCGCGCGCTGGCCGCGGACTAGAAAACTCACACTCGGTCGCCAGCCACCGGATACCAATTCGCGTTTTCGATGCGGTTTTCTCAATGACAGATTTTTTTTTGGAGTTTTTTTCAAAATTTGTATGTGAACCTATGAAAAAATGAATAATTTCCGCAGTATAGGGTCTTTAAAAAAAGAAAATGTCTAAAAATATTATATCTATTTCTAAAATTTCAGGCTGGACCAAACTCTTGGAAAACCAGGTCAATACGATGGGAAAGGGTCTCGAAAGGGTCACCCTGTCACAATTGGTTCCAGATTGTCGCGTCTAGAGTTACAGGTATGTCGCCGAAATTTCGAAAAAAAAATTTTGATAAGAAATTGAAAATTGATAAGCTTTTATTCGAATTTCACACCTTTTCTGCCCGACCAAATGTTGCGGYATTCGAAAGATTGCGACTTTAGACTTCATGGAGTTCATTGAATCAATTTTTGGGCGCTGAAACACTTCTGACAGGGACGTCAAACTTATTATTTTCCAGATGTCGAGTCTCGATCGAAAAGTAGAGTCTAGTAATCGAACACTAAGTGCTCTGTATCGATTGATGGTCGACAGAAACTCGCTGACGATTTCACCGTCACCACCGGCATTGATGAGTAGACCAGTGTCACCTGCTAACTGTTTATCACCGAGAGATCAACTCTCGCCGACGAGTATCAGCAGCCAAAGATCGGGATCTCCGAGCTATACTTTGGATCCAAATGGTGGATGGCATTAAGATACCGTGAACACTTGCTACCTAAACCGTCTACTTTGAGTTTATATATATCGGTTCCGGTAAAAGAAATCAAAAAGCGGTCAAGTGAAAAAATATTTTTGATATTATAAGAAATATTTTGTAAGTTGACCACTTTTTGATAATATCAAAAAGATATTATCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>408 282 219 91</canonical_bands>
                <polymorphic_bands>690 219 91</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>501 408 91</canonical_bands>
                <polymorphic_bands>909 91</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATAAGAAATTGAAAATTGATAAGC</pcr_primer_p1>
		<pcr_primer_p2>ACCATCAATCGATACAGAGC</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>GATAAGAAATTGAAAATTGATAAGCTTTTATTCGAATTTCACACCTTTTCTGCCCGACCAAATGTTGCGGCATTCGAAAGATTGCGACTTTAGACTTCATGGAGTTCATTGAATCAATTTTTGGGCGCTGAAACACTTCTGACAGGGACGTCAAACTTATTATTTTCCAGATGTCGAGTCTCGATCGAAAAGTAGAGTCTAGTAATCGAACACTAAGTGCTCTGTATCGATTGATGGT</canonical_amplicon>
		<polymorphic_amplicon>GATAAGAAATTGAAAATTGATAAGCTTTTATTCGAATTTCACACCTTTTCTGCCCGACCAAATGTTGCGGYATTCGAAAGATTGCGACTTTAGACTTCATGGAGTTCATTGAATCAATTTTTGGGCGCTGAAACACTTCTGACAGGGACGTCAAACTTATTATTTTCCAGATGTCGAGTCTCGATCGAAAAGTAGAGTCTAGTAATCGAACACTAAGTGCTCTGTATCGATTGATGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26072</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>450758</contig_pos>
        <strand>+</strand>
        <context>ATCGAACACT[A/G]AGTGCTCTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCAGATGTCGAGTCTCGATCGAAAAGTAGAGTCTAGTAATCGAACACT</left_flank>
        <right_flank>AGTGCTCTGTATCGATTGATGGTCGACAGAAACTCGCTGACGATTTCACC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGATGCGGTTTTCTCAATGACAGATTTTTTTTTGGAGTTTTTTTCAAAATTTGTATGTGAACCTATGAAAAAATGAATAATTTCCGCAGTATAGGGTCTTTAAAAAAAGAAAATGTCTAAAAATATTATATCTATTTCTAAAATTTCAGGCTGGACCAAACTCTTGGAAAACCAGGTCAATACGATGGGAAAGGGTCTCGAAAGGGTCACCCTGTCACAATTGGTTCCAGATTGTCGCGTCTAGAGTTACAGGTATGTCGCCGAAATTTCGAAAAAAAAATTTTGATAAGAAATTGAAAATTGATAAGCTTTTATTCGAATTTCACACCTTTTCTGCCCGACCAAATGTTGCGGCATTCGAAAGATTGCGACTTTAGACTTCATGGAGTTCATTGAATCAATTTTTGGGCGCTGAAACACTTCTGACAGGGACGTCAAACTTATTATTTTCCAGATGTCGAGTCTCGATCGAAAAGTAGAGTCTAGTAATCGAACACTAAGTGCTCTGTATCGATTGATGGTCGACAGAAACTCGCTGACGATTTCACCGTCACCACCGGCATTGATGAGTAGACCAGTGTCACCTGCTAACTGTTTATCACCGAGAGATCAACTCTCGCCGACGAGTATCAGCAGCCAAAGATCGGGATCTCCGAGCTATACTTTGGATCCAAATGGTGGATGGCATTAAGATACCGTGAACACTTGCTACCTAAACCGTCTACTTTGAGTTTATATATATCGGTTCCGGTAAAAGAAATCAAAAAGCGGTCAAGTGAAAAAATATTTTTGATATTATAAGAAATATTTTGTAAGTTGACCACTTTTTGATAATATCAAAAAGATATTATCTTTAATAGGAACCGAGATAAATTGGCTCAAAATGAGAGGGGGTTCTATGAGAGTGTTTACAGTACCTTGTTTTTGATTGGACACTGTTTTGAGTTAGCACGTTTTTCTCTCTTTTTCATTAAAAACAAATTGATAGCATAATACCAA</canonical>
            <polymorphic>TCGATGCGGTTTTCTCAATGACAGATTTTTTTTTGGAGTTTTTTTCAAAATTTGTATGTGAACCTATGAAAAAATGAATAATTTCCGCAGTATAGGGTCTTTAAAAAAAGAAAATGTCTAAAAATATTATATCTATTTCTAAAATTTCAGGCTGGACCAAACTCTTGGAAAACCAGGTCAATACGATGGGAAAGGGTCTCGAAAGGGTCACCCTGTCACAATTGGTTCCAGATTGTCGCGTCTAGAGTTACAGGTATGTCGCCGAAATTTCGAAAAAAAAATTTTGATAAGAAATTGAAAATTGATAAGCTTTTATTCGAATTTCACACCTTTTCTGCCCGACCAAATGTTGCGGCATTCGAAAGATTGCGACTTTAGACTTCATGGAGTTCATTGAATCAATTTTTGGGCGCTGAAACACTTCTGACAGGGACGTCAAACTTATTATTTTCCAGATGTCGAGTCTCGATCGAAAAGTAGAGTCTAGTAATCGAACACTRAGTGCTCTGTATCGATTGATGGTCGACAGAAACTCGCTGACGATTTCACCGTCACCACCGGCATTGATGAGTAGACCAGTGTCACCTGCTAACTGTTTATCACCGAGAGATCAACTCTCGCCGACGAGTATCAGCAGCCAAAGATCGGGATCTCCGAGCTATACTTTGGATCCAAATGGTGGATGGCATTAAGATACCGTGAACACTTGCTACCTAAACCGTCTACTTTGAGTTTATATATATCGGTTCCGGTAAAAGAAATCAAAAAGCGGTCAAGTGAAAAAATATTTTTGATATTATAAGAAATATTTTGTAAGTTGACCACTTTTTGATAATATCAAAAAGATATTATCTTTAATAGGAACCGAGATAAATTGGCTCAAAATGAGAGGGGGTTCTATGAGAGTGTTTACAGTACCTTGTTTTTGATTGGACACTGTTTTGAGTTAGCACGTTTTTCTCTCTTTTTCATTAAAAACAAATTGATAGCATAATACCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATTGCGACTTTAGACTTCAT</pcr_primer_p1>
		<pcr_primer_p2>GATCTCTCGGTGATAAACAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGATTGCGACTTTAGACTTCATGGAGTTCATTGAATCAATTTTTGGGCGCTGAAACACTTCTGACAGGGACGTCAAACTTATTATTTTCCAGATGTCGAGTCTCGATCGAAAAGTAGAGTCTAGTAATCGAACACTAAGTGCTCTGTATCGATTGATGGTCGACAGAAACTCGCTGACGATTTCACCGTCACCACCGGCATTGATGAGTAGACCAGTGTCACCTGCTAACTGTTTATCACCGAGAGATC</canonical_amplicon>
		<polymorphic_amplicon>AGATTGCGACTTTAGACTTCATGGAGTTCATTGAATCAATTTTTGGGCGCTGAAACACTTCTGACAGGGACGTCAAACTTATTATTTTCCAGATGTCGAGTCTCGATCGAAAAGTAGAGTCTAGTAATCGAACACTRAGTGCTCTGTATCGATTGATGGTCGACAGAAACTCGCTGACGATTTCACCGTCACCACCGGCATTGATGAGTAGACCAGTGTCACCTGCTAACTGTTTATCACCGAGAGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26073</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>450788</contig_pos>
        <strand>+</strand>
        <context>TGGTCGACAG[A/G]AACTCGCTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGTCTAGTAATCGAACACTAAGTGCTCTGTATCGATTGATGGTCGACAG</left_flank>
        <right_flank>AACTCGCTGACGATTTCACCGTCACCACCGGCATTGATGAGTAGACCAGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGGAGTTTTTTTCAAAATTTGTATGTGAACCTATGAAAAAATGAATAATTTCCGCAGTATAGGGTCTTTAAAAAAAGAAAATGTCTAAAAATATTATATCTATTTCTAAAATTTCAGGCTGGACCAAACTCTTGGAAAACCAGGTCAATACGATGGGAAAGGGTCTCGAAAGGGTCACCCTGTCACAATTGGTTCCAGATTGTCGCGTCTAGAGTTACAGGTATGTCGCCGAAATTTCGAAAAAAAAATTTTGATAAGAAATTGAAAATTGATAAGCTTTTATTCGAATTTCACACCTTTTCTGCCCGACCAAATGTTGCGGCATTCGAAAGATTGCGACTTTAGACTTCATGGAGTTCATTGAATCAATTTTTGGGCGCTGAAACACTTCTGACAGGGACGTCAAACTTATTATTTTCCAGATGTCGAGTCTCGATCGAAAAGTAGAGTCTAGTAATCGAACACTAAGTGCTCTGTATCGATTGATGGTCGACAGAAACTCGCTGACGATTTCACCGTCACCACCGGCATTGATGAGTAGACCAGTGTCACCTGCTAACTGTTTATCACCGAGAGATCAACTCTCGCCGACGAGTATCAGCAGCCAAAGATCGGGATCTCCGAGCTATACTTTGGATCCAAATGGTGGATGGCATTAAGATACCGTGAACACTTGCTACCTAAACCGTCTACTTTGAGTTTATATATATCGGTTCCGGTAAAAGAAATCAAAAAGCGGTCAAGTGAAAAAATATTTTTGATATTATAAGAAATATTTTGTAAGTTGACCACTTTTTGATAATATCAAAAAGATATTATCTTTAATAGGAACCGAGATAAATTGGCTCAAAATGAGAGGGGGTTCTATGAGAGTGTTTACAGTACCTTGTTTTTGATTGGACACTGTTTTGAGTTAGCACGTTTTTCTCTCTTTTTCATTAAAAACAAATTGATAGCATAATACCAAAAACCCCCAAAACAAACATCCTGAACATTG</canonical>
            <polymorphic>TTTTGGAGTTTTTTTCAAAATTTGTATGTGAACCTATGAAAAAATGAATAATTTCCGCAGTATAGGGTCTTTAAAAAAAGAAAATGTCTAAAAATATTATATCTATTTCTAAAATTTCAGGCTGGACCAAACTCTTGGAAAACCAGGTCAATACGATGGGAAAGGGTCTCGAAAGGGTCACCCTGTCACAATTGGTTCCAGATTGTCGCGTCTAGAGTTACAGGTATGTCGCCGAAATTTCGAAAAAAAAATTTTGATAAGAAATTGAAAATTGATAAGCTTTTATTCGAATTTCACACCTTTTCTGCCCGACCAAATGTTGCGGCATTCGAAAGATTGCGACTTTAGACTTCATGGAGTTCATTGAATCAATTTTTGGGCGCTGAAACACTTCTGACAGGGACGTCAAACTTATTATTTTCCAGATGTCGAGTCTCGATCGAAAAGTAGAGTCTAGTAATCGAACACTAAGTGCTCTGTATCGATTGATGGTCGACAGRAACTCGCTGACGATTTCACCGTCACCACCGGCATTGATGAGTAGACCAGTGTCACCTGCTAACTGTTTATCACCGAGAGATCAACTCTCGCCGACGAGTATCAGCAGCCAAAGATCGGGATCTCCGAGCTATACTTTGGATCCAAATGGTGGATGGCATTAAGATACCGTGAACACTTGCTACCTAAACCGTCTACTTTGAGTTTATATATATCGGTTCCGGTAAAAGAAATCAAAAAGCGGTCAAGTGAAAAAATATTTTTGATATTATAAGAAATATTTTGTAAGTTGACCACTTTTTGATAATATCAAAAAGATATTATCTTTAATAGGAACCGAGATAAATTGGCTCAAAATGAGAGGGGGTTCTATGAGAGTGTTTACAGTACCTTGTTTTTGATTGGACACTGTTTTGAGTTAGCACGTTTTTCTCTCTTTTTCATTAAAAACAAATTGATAGCATAATACCAAAAACCCCCAAAACAAACATCCTGAACATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATTGCGACTTTAGACTTCAT</pcr_primer_p1>
		<pcr_primer_p2>GATCTCTCGGTGATAAACAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGATTGCGACTTTAGACTTCATGGAGTTCATTGAATCAATTTTTGGGCGCTGAAACACTTCTGACAGGGACGTCAAACTTATTATTTTCCAGATGTCGAGTCTCGATCGAAAAGTAGAGTCTAGTAATCGAACACTAAGTGCTCTGTATCGATTGATGGTCGACAGAAACTCGCTGACGATTTCACCGTCACCACCGGCATTGATGAGTAGACCAGTGTCACCTGCTAACTGTTTATCACCGAGAGATC</canonical_amplicon>
		<polymorphic_amplicon>AGATTGCGACTTTAGACTTCATGGAGTTCATTGAATCAATTTTTGGGCGCTGAAACACTTCTGACAGGGACGTCAAACTTATTATTTTCCAGATGTCGAGTCTCGATCGAAAAGTAGAGTCTAGTAATCGAACACTAAGTGCTCTGTATCGATTGATGGTCGACAGRAACTCGCTGACGATTTCACCGTCACCACCGGCATTGATGAGTAGACCAGTGTCACCTGCTAACTGTTTATCACCGAGAGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26074</snp_id>
        <super_contig>c002000737.Contig8</super_contig>
        <contig_pos>450827</contig_pos>
        <strand>+</strand>
        <context>CGGCATTGAT[A/G]AGTAGACCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGGTCGACAGAAACTCGCTGACGATTTCACCGTCACCACCGGCATTGAT</left_flank>
        <right_flank>AGTAGACCAGTGTCACCTGCTAACTGTTTATCACCGAGAGATCAACTCTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATGAATAATTTCCGCAGTATAGGGTCTTTAAAAAAAGAAAATGTCTAAAAATATTATATCTATTTCTAAAATTTCAGGCTGGACCAAACTCTTGGAAAACCAGGTCAATACGATGGGAAAGGGTCTCGAAAGGGTCACCCTGTCACAATTGGTTCCAGATTGTCGCGTCTAGAGTTACAGGTATGTCGCCGAAATTTCGAAAAAAAAATTTTGATAAGAAATTGAAAATTGATAAGCTTTTATTCGAATTTCACACCTTTTCTGCCCGACCAAATGTTGCGGCATTCGAAAGATTGCGACTTTAGACTTCATGGAGTTCATTGAATCAATTTTTGGGCGCTGAAACACTTCTGACAGGGACGTCAAACTTATTATTTTCCAGATGTCGAGTCTCGATCGAAAAGTAGAGTCTAGTAATCGAACACTAAGTGCTCTGTATCGATTGATGGTCGACAGAAACTCGCTGACGATTTCACCGTCACCACCGGCATTGATGAGTAGACCAGTGTCACCTGCTAACTGTTTATCACCGAGAGATCAACTCTCGCCGACGAGTATCAGCAGCCAAAGATCGGGATCTCCGAGCTATACTTTGGATCCAAATGGTGGATGGCATTAAGATACCGTGAACACTTGCTACCTAAACCGTCTACTTTGAGTTTATATATATCGGTTCCGGTAAAAGAAATCAAAAAGCGGTCAAGTGAAAAAATATTTTTGATATTATAAGAAATATTTTGTAAGTTGACCACTTTTTGATAATATCAAAAAGATATTATCTTTAATAGGAACCGAGATAAATTGGCTCAAAATGAGAGGGGGTTCTATGAGAGTGTTTACAGTACCTTGTTTTTGATTGGACACTGTTTTGAGTTAGCACGTTTTTCTCTCTTTTTCATTAAAAACAAATTGATAGCATAATACCAAAAACCCCCAAAACAAACATCCTGAACATTGATAATAACTGGTAAAAAACTTTCTCTGTTAGCTTTCGTT</canonical>
            <polymorphic>AAAAATGAATAATTTCCGCAGTATAGGGTCTTTAAAAAAAGAAAATGTCTAAAAATATTATATCTATTTCTAAAATTTCAGGCTGGACCAAACTCTTGGAAAACCAGGTCAATACGATGGGAAAGGGTCTCGAAAGGGTCACCCTGTCACAATTGGTTCCAGATTGTCGCGTCTAGAGTTACAGGTATGTCGCCGAAATTTCGAAAAAAAAATTTTGATAAGAAATTGAAAATTGATAAGCTTTTATTCGAATTTCACACCTTTTCTGCCCGACCAAATGTTGCGGCATTCGAAAGATTGCGACTTTAGACTTCATGGAGTTCATTGAATCAATTTTTGGGCGCTGAAACACTTCTGACAGGGACGTCAAACTTATTATTTTCCAGATGTCGAGTCTCGATCGAAAAGTAGAGTCTAGTAATCGAACACTAAGTGCTCTGTATCGATTGATGGTCGACAGAAACTCGCTGACGATTTCACCGTCACCACCGGCATTGATRAGTAGACCAGTGTCACCTGCTAACTGTTTATCACCGAGAGATCAACTCTCGCCGACGAGTATCAGCAGCCAAAGATCGGGATCTCCGAGCTATACTTTGGATCCAAATGGTGGATGGCATTAAGATACCGTGAACACTTGCTACCTAAACCGTCTACTTTGAGTTTATATATATCGGTTCCGGTAAAAGAAATCAAAAAGCGGTCAAGTGAAAAAATATTTTTGATATTATAAGAAATATTTTGTAAGTTGACCACTTTTTGATAATATCAAAAAGATATTATCTTTAATAGGAACCGAGATAAATTGGCTCAAAATGAGAGGGGGTTCTATGAGAGTGTTTACAGTACCTTGTTTTTGATTGGACACTGTTTTGAGTTAGCACGTTTTTCTCTCTTTTTCATTAAAAACAAATTGATAGCATAATACCAAAAACCCCCAAAACAAACATCCTGAACATTGATAATAACTGGTAAAAAACTTTCTCTGTTAGCTTTCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTCTCGATCGAAAAGTAGAGT</pcr_primer_p1>
		<pcr_primer_p2>GCAAGTGTTCACGGTATCTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGTCTCGATCGAAAAGTAGAGTCTAGTAATCGAACACTAAGTGCTCTGTATCGATTGATGGTCGACAGAAACTCGCTGACGATTTCACCGTCACCACCGGCATTGATGAGTAGACCAGTGTCACCTGCTAACTGTTTATCACCGAGAGATCAACTCTCGCCGACGAGTATCAGCAGCCAAAGATCGGGATCTCCGAGCTATACTTTGGATCCAAATGGTGGATGGCATTAAGATACCGTGAACACTTGC</canonical_amplicon>
		<polymorphic_amplicon>GAGTCTCGATCGAAAAGTAGAGTCTAGTAATCGAACACTAAGTGCTCTGTATCGATTGATGGTCGACAGAAACTCGCTGACGATTTCACCGTCACCACCGGCATTGATRAGTAGACCAGTGTCACCTGCTAACTGTTTATCACCGAGAGATCAACTCTCGCCGACGAGTATCAGCAGCCAAAGATCGGGATCTCCGAGCTATACTTTGGATCCAAATGGTGGATGGCATTAAGATACCGTGAACACTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26075</snp_id>
        <super_contig>c002000982.Contig1</super_contig>
        <contig_pos>16224</contig_pos>
        <strand>+</strand>
        <context>ATTTTTGGTC[A/G]AATTTTCTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTGAATTTCAAAAAATTACTGTTTCATTTGAAATACTTTATTTTTGGTC</left_flank>
        <right_flank>AATTTTCTTAAATTAATGAAACGGTTCAAAAAGAGAAAATCAAGATAATT</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTATCGACAATTGTCGACACAAACTTTATGGATCGTGTCCACAAATGTCGACACGACACACTGTCGACAAGAAACTCTAGGTGGTACACAAGAACCCAAATTGTTTTGAAACGGCAATTTTTAAATTTTAAATAACCTTAACTTGTCTGGCGGAAAAAGAACACTTAGAGAAAACATGTTCAGATTTTTCAATTAGAATTTTAAAGACATTTTGAAACATCAGTTTTTCTGAAATTCCAAAGCCTGAGCATAAATGATAGGCAATGGAAAAAGTTGGACCATCAGAATTACAAAAAATAAGTTGAAACAGTAATTTTTTGAGTTTCAAGCTTTTTTCGAGAATCTAAGATCCAAAAACCCCGAAATTGTTTCCAAAATTTCAATTTCCTCGCGATAAGAACTGGGAATATACAATTTTTGAGCTTCAAGATCTGAAAATCCAAAAGTTGTTGAATTTCAAAAAATTACTGTTTCATTTGAAATACTTTATTTTTGGTCGAATTTTCTTAAATTAATGAAACGGTTCAAAAAGAGAAAATCAAGATAATTTAAAGGACATTGAAAAGTCGAATTTATATGAAATTCAACAGAAAAGTGCTGAAAATCGGCAAAAATGGGCAGTCTCATAAAATTTTCATAACTGGAAGAAAACTCAAAATCGGCTCAGAGAATGTACCAGGTGAATTTCTGACCACTTCTAGGTCAAAAATATTGGTGGCCTAGAAAACTCATATTGCAAAAGTAAGGCCACCATGTTAAAATGGCTTAAAAACGCACCATGTTAACATCAGATCTTTTTCAAGTCAAAAAGTTTGGTGACCTAGAAAATTCATGTTGGAAATATTAGGCCACCAGGTCAGATGTCCTAAAAAAATGGTAACGATACAACTTTTTACAAGTAAGTCCGGCGGTTAATAGCAATTTTTTGTCGATAATTTGTCGAAAAATGCCCCCTTCGACAAATTTATCGACAATTTGTCAACAAAATTTTGTCGATAA</canonical>
            <polymorphic>TTTATCGACAATTGTCGACACAAACTTTATGGATCGTGTCCACAAATGTCGACACGACACACTGTCGACAAGAAACTCTAGGTGGTACACAAGAACCCAAATTGTTTTGAAACGGCAATTTTTAAATTTTAAATAACCTTAACTTGTCTGGCGGAAAAAGAACACTTAGAGAAAACATGTTCAGATTTTTCAATTAGAATTTTAAAGACATTTTGAAACATCAGTTTTTCTGAAATTCCAAAGCCTGAGCATAAATGATAGGCAATGGAAAAAGTTGGACCATCAGAATTACAAAAAATAAGTTGAAACAGTAATTTTTTGAGTTTCAAGCTTTTTTCGAGAATCTAAGATCCAAAAACCCCGAAATTGTTTCCAAAATTTCAATTTCCTCGCGATAAGAACTGGGAATATACAATTTTTGAGCTTCAAGATCTGAAAATCCAAAAGTTGTTGAATTTCAAAAAATTACTGTTTCATTTGAAATACTTTATTTTTGGTCRAATTTTCTTAAATTAATGAAACGGTTCAAAAAGAGAAAATCAAGATAATTTAAAGGACATTGAAAAGTCGAATTTATATGAAATTCAACAGAAAAGTGCTGAAAATCGGCAAAAATGGGCAGTCTCATAAAATTTTCATAACTGGAAGAAAACTCAAAATCGGCTCAGAGAATGTACCAGGTGAATTTCTGACCACTTCTAGGTCAAAAATATTGGTGGCCTAGAAAACTCATATTGCAAAAGTAAGGCCACCATGTTAAAATGGCTTAAAAACGCACCATGTTAACATCAGATCTTTTTCAAGTCAAAAAGTTTGGTGACCTAGAAAATTCATGTTGGAAATATTAGGCCACCAGGTCAGATGTCCTAAAAAAATGGTAACGATACAACTTTTTACAAGTAAGTCCGGCGGTTAATAGCAATTTTTTGTCGATAATTTGTCGAAAAATGCCCCCTTCGACAAATTTATCGACAATTTGTCAACAAAATTTTGTCGATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>144 143 135 124 77 73 70 53 49 47 36 24 14 11</canonical_bands>
                <polymorphic_bands>144 143 135 124 117 77 73 53 49 36 24 14 11</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>362 272 161 70 34 25 16 16 12 11 10 6 5</canonical_bands>
                <polymorphic_bands>362 272 231 34 25 16 16 12 11 10 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATAAGAACTGGGAATATACAA</pcr_primer_p1>
		<pcr_primer_p2>AGTTATGAAAATTTTATGAGACTGC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CGATAAGAACTGGGAATATACAATTTTTGAGCTTCAAGATCTGAAAATCCAAAAGTTGTTGAATTTCAAAAAATTACTGTTTCATTTGAAATACTTTATTTTTGGTCGAATTTTCTTAAATTAATGAAACGGTTCAAAAAGAGAAAATCAAGATAATTTAAAGGACATTGAAAAGTCGAATTTATATGAAATTCAACAGAAAAGTGCTGAAAATCGGCAAAAATGGGCAGTCTCATAAAATTTTCATAACT</canonical_amplicon>
		<polymorphic_amplicon>CGATAAGAACTGGGAATATACAATTTTTGAGCTTCAAGATCTGAAAATCCAAAAGTTGTTGAATTTCAAAAAATTACTGTTTCATTTGAAATACTTTATTTTTGGTCRAATTTTCTTAAATTAATGAAACGGTTCAAAAAGAGAAAATCAAGATAATTTAAAGGACATTGAAAAGTCGAATTTATATGAAATTCAACAGAAAAGTGCTGAAAATCGGCAAAAATGGGCAGTCTCATAAAATTTTCATAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26076</snp_id>
        <super_contig>c002000982.Contig1</super_contig>
        <contig_pos>16377</contig_pos>
        <strand></strand>
        <context>TGGAAGAAAA[C/T]TCaaaatcgg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATCGGCAAAAATGGGCAGTCTCATAAAATTTTCATAACTGGAAGAAAA</left_flank>
        <right_flank>TCAAAATCGGCTCAGAGAATGTACCAGGTGAATTTCTGACCACTTCTAGG</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAAGAACACTTAGAGAAAACATGTTCAGATTTTTCAATTAGAATTTTAAAGACATTTTGAAACATCAGTTTTTCTGAAATTCCAAAGCCTGAGCATAAATGATAGGCAATGGAAAAAGTTGGACCATCAGAATTACAAAAAATAAGTTGAAACAGTAATTTTTTGAGTTTCAAGCTTTTTTCGAGAATCTAAGATCCAAAAACCCCGAAATTGTTTCCAAAATTTCAATTTCCTCGCGATAAGAACTGGGAATATACAATTTTTGAGCTTCAAGATCTGAAAATCCAAAAGTTGTTGAATTTCAAAAAATTACTGTTTCATTTGAAATACTTTATTTTTGGTCGAATTTTCTTAAATTAATGAAACGGTTCAAAAAGAGAAAATCAAGATAATTTAAAGGACATTGAAAAGTCGAATTTATATGAAATTCAACAGAAAAGTGCTGAAAATCGGCAAAAATGGGCAGTCTCATAAAATTTTCATAACTGGAAGAAAACTCAAAATCGGCTCAGAGAATGTACCAGGTGAATTTCTGACCACTTCTAGGTCAAAAATATTGGTGGCCTAGAAAACTCATATTGCAAAAGTAAGGCCACCATGTTAAAATGGCTTAAAAACGCACCATGTTAACATCAGATCTTTTTCAAGTCAAAAAGTTTGGTGACCTAGAAAATTCATGTTGGAAATATTAGGCCACCAGGTCAGATGTCCTAAAAAAATGGTAACGATACAACTTTTTACAAGTAAGTCCGGCGGTTAATAGCAATTTTTTGTCGATAATTTGTCGAAAAATGCCCCCTTCGACAAATTTATCGACAATTTGTCAACAAAATTTTGTCGATAAATTTGTCGATAAATTACTTTCGACAAATTTATCGATAATTTGTCAGGTGAATTTATCGACGAAATCGGAAAATCTTTGTCGATAAGGCACACTGGTACTATTCTATCAATCGGTTGCAGGAAAACCAATTCAAATAGGCAGATTCTAGGGATT</canonical>
            <polymorphic>GAAAAAGAACACTTAGAGAAAACATGTTCAGATTTTTCAATTAGAATTTTAAAGACATTTTGAAACATCAGTTTTTCTGAAATTCCAAAGCCTGAGCATAAATGATAGGCAATGGAAAAAGTTGGACCATCAGAATTACAAAAAATAAGTTGAAACAGTAATTTTTTGAGTTTCAAGCTTTTTTCGAGAATCTAAGATCCAAAAACCCCGAAATTGTTTCCAAAATTTCAATTTCCTCGCGATAAGAACTGGGAATATACAATTTTTGAGCTTCAAGATCTGAAAATCCAAAAGTTGTTGAATTTCAAAAAATTACTGTTTCATTTGAAATACTTTATTTTTGGTCGAATTTTCTTAAATTAATGAAACGGTTCAAAAAGAGAAAATCAAGATAATTTAAAGGACATTGAAAAGTCGAATTTATATGAAATTCAACAGAAAAGTGCTGAAAATCGGCAAAAATGGGCAGTCTCATAAAATTTTCATAACTGGAAGAAAAYTCAAAATCGGCTCAGAGAATGTACCAGGTGAATTTCTGACCACTTCTAGGTCAAAAATATTGGTGGCCTAGAAAACTCATATTGCAAAAGTAAGGCCACCATGTTAAAATGGCTTAAAAACGCACCATGTTAACATCAGATCTTTTTCAAGTCAAAAAGTTTGGTGACCTAGAAAATTCATGTTGGAAATATTAGGCCACCAGGTCAGATGTCCTAAAAAAATGGTAACGATACAACTTTTTACAAGTAAGTCCGGCGGTTAATAGCAATTTTTTGTCGATAATTTGTCGAAAAATGCCCCCTTCGACAAATTTATCGACAATTTGTCAACAAAATTTTGTCGATAAATTTGTCGATAAATTACTTTCGACAAATTTATCGATAATTTGTCAGGTGAATTTATCGACGAAATCGGAAAATCTTTGTCGATAAGGCACACTGGTACTATTCTATCAATCGGTTGCAGGAAAACCAATTCAAATAGGCAGATTCTAGGGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACAGAAAAGTGCTGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGCAACCGATTGATAGAATAG</pcr_primer_p2>
		<pcr_amplicon_size>533</pcr_amplicon_size>
		<canonical_amplicon>CAACAGAAAAGTGCTGAAAATCGGCAAAAATGGGCAGTCTCATAAAATTTTCATAACTGGAAGAAAACTCAAAATCGGCTCAGAGAATGTACCAGGTGAATTTCTGACCACTTCTAGGTCAAAAATATTGGTGGCCTAGAAAACTCATATTGCAAAAGTAAGGCCACCATGTTAAAATGGCTTAAAAACGCACCATGTTAACATCAGATCTTTTTCAAGTCAAAAAGTTTGGTGACCTAGAAAATTCATGTTGGAAATATTAGGCCACCAGGTCAGATGTCCTAAAAAAATGGTAACGATACAACTTTTTACAAGTAAGTCCGGCGGTTAATAGCAATTTTTTGTCGATAATTTGTCGAAAAATGCCCCCTTCGACAAATTTATCGACAATTTGTCAACAAAATTTTGTCGATAAATTTGTCGATAAATTACTTTCGACAAATTTATCGATAATTTGTCAGGTGAATTTATCGACGAAATCGGAAAATCTTTGTCGATAAGGCACACTGGTACTATTCTATCAATCGGTTGCA</canonical_amplicon>
		<polymorphic_amplicon>CAACAGAAAAGTGCTGAAAATCGGCAAAAATGGGCAGTCTCATAAAATTTTCATAACTGGAAGAAAAYTCAAAATCGGCTCAGAGAATGTACCAGGTGAATTTCTGACCACTTCTAGGTCAAAAATATTGGTGGCCTAGAAAACTCATATTGCAAAAGTAAGGCCACCATGTTAAAATGGCTTAAAAACGCACCATGTTAACATCAGATCTTTTTCAAGTCAAAAAGTTTGGTGACCTAGAAAATTCATGTTGGAAATATTAGGCCACCAGGTCAGATGTCCTAAAAAAATGGTAACGATACAACTTTTTACAAGTAAGTCCGGCGGTTAATAGCAATTTTTTGTCGATAATTTGTCGAAAAATGCCCCCTTCGACAAATTTATCGACAATTTGTCAACAAAATTTTGTCGATAAATTTGTCGATAAATTACTTTCGACAAATTTATCGATAATTTGTCAGGTGAATTTATCGACGAAATCGGAAAATCTTTGTCGATAAGGCACACTGGTACTATTCTATCAATCGGTTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26077</snp_id>
        <super_contig>c002000982.Contig1</super_contig>
        <contig_pos>16547</contig_pos>
        <strand></strand>
        <context>tttggtgacc[T/A]agaaaattca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ACGCACCATGTTAACATCAGATCTTTTTCAAGTCAAAAAGTTTGGTGACC</left_flank>
        <right_flank>AGAAAATTCATGTTGGAAATATTAGGCCACCAGGTCAGATGTCCTAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCAAGCTTTTTTCGAGAATCTAAGATCCAAAAACCCCGAAATTGTTTCCAAAATTTCAATTTCCTCGCGATAAGAACTGGGAATATACAATTTTTGAGCTTCAAGATCTGAAAATCCAAAAGTTGTTGAATTTCAAAAAATTACTGTTTCATTTGAAATACTTTATTTTTGGTCGAATTTTCTTAAATTAATGAAACGGTTCAAAAAGAGAAAATCAAGATAATTTAAAGGACATTGAAAAGTCGAATTTATATGAAATTCAACAGAAAAGTGCTGAAAATCGGCAAAAATGGGCAGTCTCATAAAATTTTCATAACTGGAAGAAAACTCAAAATCGGCTCAGAGAATGTACCAGGTGAATTTCTGACCACTTCTAGGTCAAAAATATTGGTGGCCTAGAAAACTCATATTGCAAAAGTAAGGCCACCATGTTAAAATGGCTTAAAAACGCACCATGTTAACATCAGATCTTTTTCAAGTCAAAAAGTTTGGTGACCTAGAAAATTCATGTTGGAAATATTAGGCCACCAGGTCAGATGTCCTAAAAAAATGGTAACGATACAACTTTTTACAAGTAAGTCCGGCGGTTAATAGCAATTTTTTGTCGATAATTTGTCGAAAAATGCCCCCTTCGACAAATTTATCGACAATTTGTCAACAAAATTTTGTCGATAAATTTGTCGATAAATTACTTTCGACAAATTTATCGATAATTTGTCAGGTGAATTTATCGACGAAATCGGAAAATCTTTGTCGATAAGGCACACTGGTACTATTCTATCAATCGGTTGCAGGAAAACCAATTCAAATAGGCAGATTCTAGGGATTCAGAGCTTTTAAAGAAAATTCAAAATTTCCGAAAAGTTACTGTTTCAAAAATTTTCAAAAGTTAAAACGCTTTTTCTGAATAATGTTTTGTAGTTATTCATGATTTCCAATGGAACAATTTGAATTTCAGAAATTCCGGAGGGGAAAACGTTTTTAGAAATAGAAATTTT</canonical>
            <polymorphic>TTTCAAGCTTTTTTCGAGAATCTAAGATCCAAAAACCCCGAAATTGTTTCCAAAATTTCAATTTCCTCGCGATAAGAACTGGGAATATACAATTTTTGAGCTTCAAGATCTGAAAATCCAAAAGTTGTTGAATTTCAAAAAATTACTGTTTCATTTGAAATACTTTATTTTTGGTCGAATTTTCTTAAATTAATGAAACGGTTCAAAAAGAGAAAATCAAGATAATTTAAAGGACATTGAAAAGTCGAATTTATATGAAATTCAACAGAAAAGTGCTGAAAATCGGCAAAAATGGGCAGTCTCATAAAATTTTCATAACTGGAAGAAAACTCAAAATCGGCTCAGAGAATGTACCAGGTGAATTTCTGACCACTTCTAGGTCAAAAATATTGGTGGCCTAGAAAACTCATATTGCAAAAGTAAGGCCACCATGTTAAAATGGCTTAAAAACGCACCATGTTAACATCAGATCTTTTTCAAGTCAAAAAGTTTGGTGACCWAGAAAATTCATGTTGGAAATATTAGGCCACCAGGTCAGATGTCCTAAAAAAATGGTAACGATACAACTTTTTACAAGTAAGTCCGGCGGTTAATAGCAATTTTTTGTCGATAATTTGTCGAAAAATGCCCCCTTCGACAAATTTATCGACAATTTGTCAACAAAATTTTGTCGATAAATTTGTCGATAAATTACTTTCGACAAATTTATCGATAATTTGTCAGGTGAATTTATCGACGAAATCGGAAAATCTTTGTCGATAAGGCACACTGGTACTATTCTATCAATCGGTTGCAGGAAAACCAATTCAAATAGGCAGATTCTAGGGATTCAGAGCTTTTAAAGAAAATTCAAAATTTCCGAAAAGTTACTGTTTCAAAAATTTTCAAAAGTTAAAACGCTTTTTCTGAATAATGTTTTGTAGTTATTCATGATTTCCAATGGAACAATTTGAATTTCAGAAATTCCGGAGGGGAAAACGTTTTTAGAAATAGAAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>376 323 178 101 22</canonical_bands>
                <polymorphic_bands>424 376 178 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAATTTTCATAACTGGAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>TGCAACCGATTGATAGAATAG</pcr_primer_p2>
		<pcr_amplicon_size>491</pcr_amplicon_size>
		<canonical_amplicon>TAAAATTTTCATAACTGGAAGAAAACTCAAAATCGGCTCAGAGAATGTACCAGGTGAATTTCTGACCACTTCTAGGTCAAAAATATTGGTGGCCTAGAAAACTCATATTGCAAAAGTAAGGCCACCATGTTAAAATGGCTTAAAAACGCACCATGTTAACATCAGATCTTTTTCAAGTCAAAAAGTTTGGTGACCTAGAAAATTCATGTTGGAAATATTAGGCCACCAGGTCAGATGTCCTAAAAAAATGGTAACGATACAACTTTTTACAAGTAAGTCCGGCGGTTAATAGCAATTTTTTGTCGATAATTTGTCGAAAAATGCCCCCTTCGACAAATTTATCGACAATTTGTCAACAAAATTTTGTCGATAAATTTGTCGATAAATTACTTTCGACAAATTTATCGATAATTTGTCAGGTGAATTTATCGACGAAATCGGAAAATCTTTGTCGATAAGGCACACTGGTACTATTCTATCAATCGGTTGCA</canonical_amplicon>
		<polymorphic_amplicon>TAAAATTTTCATAACTGGAAGAAAACTCAAAATCGGCTCAGAGAATGTACCAGGTGAATTTCTGACCACTTCTAGGTCAAAAATATTGGTGGCCTAGAAAACTCATATTGCAAAAGTAAGGCCACCATGTTAAAATGGCTTAAAAACGCACCATGTTAACATCAGATCTTTTTCAAGTCAAAAAGTTTGGTGACCWAGAAAATTCATGTTGGAAATATTAGGCCACCAGGTCAGATGTCCTAAAAAAATGGTAACGATACAACTTTTTACAAGTAAGTCCGGCGGTTAATAGCAATTTTTTGTCGATAATTTGTCGAAAAATGCCCCCTTCGACAAATTTATCGACAATTTGTCAACAAAATTTTGTCGATAAATTTGTCGATAAATTACTTTCGACAAATTTATCGATAATTTGTCAGGTGAATTTATCGACGAAATCGGAAAATCTTTGTCGATAAGGCACACTGGTACTATTCTATCAATCGGTTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26078</snp_id>
        <super_contig>c002000982.Contig1</super_contig>
        <contig_pos>16589</contig_pos>
        <strand></strand>
        <context>aggtcagatg[T/G]yctaraaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TGGTGACCTAGAAAATTCATGTTGGAAATATTAGGCCACCAGGTCAGATG</left_flank>
        <right_flank>CCTAAAAAAATGGTAACGATACAACTTTTTACAAGTAAGTCCGGCGGTTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGTTTCCAAAATTTCAATTTCCTCGCGATAAGAACTGGGAATATACAATTTTTGAGCTTCAAGATCTGAAAATCCAAAAGTTGTTGAATTTCAAAAAATTACTGTTTCATTTGAAATACTTTATTTTTGGTCGAATTTTCTTAAATTAATGAAACGGTTCAAAAAGAGAAAATCAAGATAATTTAAAGGACATTGAAAAGTCGAATTTATATGAAATTCAACAGAAAAGTGCTGAAAATCGGCAAAAATGGGCAGTCTCATAAAATTTTCATAACTGGAAGAAAACTCAAAATCGGCTCAGAGAATGTACCAGGTGAATTTCTGACCACTTCTAGGTCAAAAATATTGGTGGCCTAGAAAACTCATATTGCAAAAGTAAGGCCACCATGTTAAAATGGCTTAAAAACGCACCATGTTAACATCAGATCTTTTTCAAGTCAAAAAGTTTGGTGACCTAGAAAATTCATGTTGGAAATATTAGGCCACCAGGTCAGATGTCCTAAAAAAATGGTAACGATACAACTTTTTACAAGTAAGTCCGGCGGTTAATAGCAATTTTTTGTCGATAATTTGTCGAAAAATGCCCCCTTCGACAAATTTATCGACAATTTGTCAACAAAATTTTGTCGATAAATTTGTCGATAAATTACTTTCGACAAATTTATCGATAATTTGTCAGGTGAATTTATCGACGAAATCGGAAAATCTTTGTCGATAAGGCACACTGGTACTATTCTATCAATCGGTTGCAGGAAAACCAATTCAAATAGGCAGATTCTAGGGATTCAGAGCTTTTAAAGAAAATTCAAAATTTCCGAAAAGTTACTGTTTCAAAAATTTTCAAAAGTTAAAACGCTTTTTCTGAATAATGTTTTGTAGTTATTCATGATTTCCAATGGAACAATTTGAATTTCAGAAATTCCGGAGGGGAAAACGTTTTTAGAAATAGAAATTTTCGAATTCCAACTTGAAAAAAGTTCTATGAGTTTTCGAGAATT</canonical>
            <polymorphic>ATTGTTTCCAAAATTTCAATTTCCTCGCGATAAGAACTGGGAATATACAATTTTTGAGCTTCAAGATCTGAAAATCCAAAAGTTGTTGAATTTCAAAAAATTACTGTTTCATTTGAAATACTTTATTTTTGGTCGAATTTTCTTAAATTAATGAAACGGTTCAAAAAGAGAAAATCAAGATAATTTAAAGGACATTGAAAAGTCGAATTTATATGAAATTCAACAGAAAAGTGCTGAAAATCGGCAAAAATGGGCAGTCTCATAAAATTTTCATAACTGGAAGAAAACTCAAAATCGGCTCAGAGAATGTACCAGGTGAATTTCTGACCACTTCTAGGTCAAAAATATTGGTGGCCTAGAAAACTCATATTGCAAAAGTAAGGCCACCATGTTAAAATGGCTTAAAAACGCACCATGTTAACATCAGATCTTTTTCAAGTCAAAAAGTTTGGTGACCTAGAAAATTCATGTTGGAAATATTAGGCCACCAGGTCAGATGKCCTAAAAAAATGGTAACGATACAACTTTTTACAAGTAAGTCCGGCGGTTAATAGCAATTTTTTGTCGATAATTTGTCGAAAAATGCCCCCTTCGACAAATTTATCGACAATTTGTCAACAAAATTTTGTCGATAAATTTGTCGATAAATTACTTTCGACAAATTTATCGATAATTTGTCAGGTGAATTTATCGACGAAATCGGAAAATCTTTGTCGATAAGGCACACTGGTACTATTCTATCAATCGGTTGCAGGAAAACCAATTCAAATAGGCAGATTCTAGGGATTCAGAGCTTTTAAAGAAAATTCAAAATTTCCGAAAAGTTACTGTTTCAAAAATTTTCAAAAGTTAAAACGCTTTTTCTGAATAATGTTTTGTAGTTATTCATGATTTCCAATGGAACAATTTGAATTTCAGAAATTCCGGAGGGGAAAACGTTTTTAGAAATAGAAATTTTCGAATTCCAACTTGAAAAAAGTTCTATGAGTTTTCGAGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAATTTTCATAACTGGAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>TGCAACCGATTGATAGAATAG</pcr_primer_p2>
		<pcr_amplicon_size>491</pcr_amplicon_size>
		<canonical_amplicon>TAAAATTTTCATAACTGGAAGAAAACTCAAAATCGGCTCAGAGAATGTACCAGGTGAATTTCTGACCACTTCTAGGTCAAAAATATTGGTGGCCTAGAAAACTCATATTGCAAAAGTAAGGCCACCATGTTAAAATGGCTTAAAAACGCACCATGTTAACATCAGATCTTTTTCAAGTCAAAAAGTTTGGTGACCTAGAAAATTCATGTTGGAAATATTAGGCCACCAGGTCAGATGTCCTAAAAAAATGGTAACGATACAACTTTTTACAAGTAAGTCCGGCGGTTAATAGCAATTTTTTGTCGATAATTTGTCGAAAAATGCCCCCTTCGACAAATTTATCGACAATTTGTCAACAAAATTTTGTCGATAAATTTGTCGATAAATTACTTTCGACAAATTTATCGATAATTTGTCAGGTGAATTTATCGACGAAATCGGAAAATCTTTGTCGATAAGGCACACTGGTACTATTCTATCAATCGGTTGCA</canonical_amplicon>
		<polymorphic_amplicon>TAAAATTTTCATAACTGGAAGAAAACTCAAAATCGGCTCAGAGAATGTACCAGGTGAATTTCTGACCACTTCTAGGTCAAAAATATTGGTGGCCTAGAAAACTCATATTGCAAAAGTAAGGCCACCATGTTAAAATGGCTTAAAAACGCACCATGTTAACATCAGATCTTTTTCAAGTCAAAAAGTTTGGTGACCTAGAAAATTCATGTTGGAAATATTAGGCCACCAGGTCAGATGKCCTAAAAAAATGGTAACGATACAACTTTTTACAAGTAAGTCCGGCGGTTAATAGCAATTTTTTGTCGATAATTTGTCGAAAAATGCCCCCTTCGACAAATTTATCGACAATTTGTCAACAAAATTTTGTCGATAAATTTGTCGATAAATTACTTTCGACAAATTTATCGATAATTTGTCAGGTGAATTTATCGACGAAATCGGAAAATCTTTGTCGATAAGGCACACTGGTACTATTCTATCAATCGGTTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26079</snp_id>
        <super_contig>c002000982.Contig1</super_contig>
        <contig_pos>16590</contig_pos>
        <strand></strand>
        <context>ggtcagatgk[C/T]ctaraaaaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTGACCTAGAAAATTCATGTTGGAAATATTAGGCCACCAGGTCAGATGT</left_flank>
        <right_flank>CTAAAAAAATGGTAACGATACAACTTTTTACAAGTAAGTCCGGCGGTTAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTTCCAAAATTTCAATTTCCTCGCGATAAGAACTGGGAATATACAATTTTTGAGCTTCAAGATCTGAAAATCCAAAAGTTGTTGAATTTCAAAAAATTACTGTTTCATTTGAAATACTTTATTTTTGGTCGAATTTTCTTAAATTAATGAAACGGTTCAAAAAGAGAAAATCAAGATAATTTAAAGGACATTGAAAAGTCGAATTTATATGAAATTCAACAGAAAAGTGCTGAAAATCGGCAAAAATGGGCAGTCTCATAAAATTTTCATAACTGGAAGAAAACTCAAAATCGGCTCAGAGAATGTACCAGGTGAATTTCTGACCACTTCTAGGTCAAAAATATTGGTGGCCTAGAAAACTCATATTGCAAAAGTAAGGCCACCATGTTAAAATGGCTTAAAAACGCACCATGTTAACATCAGATCTTTTTCAAGTCAAAAAGTTTGGTGACCTAGAAAATTCATGTTGGAAATATTAGGCCACCAGGTCAGATGTCCTAAAAAAATGGTAACGATACAACTTTTTACAAGTAAGTCCGGCGGTTAATAGCAATTTTTTGTCGATAATTTGTCGAAAAATGCCCCCTTCGACAAATTTATCGACAATTTGTCAACAAAATTTTGTCGATAAATTTGTCGATAAATTACTTTCGACAAATTTATCGATAATTTGTCAGGTGAATTTATCGACGAAATCGGAAAATCTTTGTCGATAAGGCACACTGGTACTATTCTATCAATCGGTTGCAGGAAAACCAATTCAAATAGGCAGATTCTAGGGATTCAGAGCTTTTAAAGAAAATTCAAAATTTCCGAAAAGTTACTGTTTCAAAAATTTTCAAAAGTTAAAACGCTTTTTCTGAATAATGTTTTGTAGTTATTCATGATTTCCAATGGAACAATTTGAATTTCAGAAATTCCGGAGGGGAAAACGTTTTTAGAAATAGAAATTTTCGAATTCCAACTTGAAAAAAGTTCTATGAGTTTTCGAGAATTT</canonical>
            <polymorphic>TTGTTTCCAAAATTTCAATTTCCTCGCGATAAGAACTGGGAATATACAATTTTTGAGCTTCAAGATCTGAAAATCCAAAAGTTGTTGAATTTCAAAAAATTACTGTTTCATTTGAAATACTTTATTTTTGGTCGAATTTTCTTAAATTAATGAAACGGTTCAAAAAGAGAAAATCAAGATAATTTAAAGGACATTGAAAAGTCGAATTTATATGAAATTCAACAGAAAAGTGCTGAAAATCGGCAAAAATGGGCAGTCTCATAAAATTTTCATAACTGGAAGAAAACTCAAAATCGGCTCAGAGAATGTACCAGGTGAATTTCTGACCACTTCTAGGTCAAAAATATTGGTGGCCTAGAAAACTCATATTGCAAAAGTAAGGCCACCATGTTAAAATGGCTTAAAAACGCACCATGTTAACATCAGATCTTTTTCAAGTCAAAAAGTTTGGTGACCTAGAAAATTCATGTTGGAAATATTAGGCCACCAGGTCAGATGTYCTAAAAAAATGGTAACGATACAACTTTTTACAAGTAAGTCCGGCGGTTAATAGCAATTTTTTGTCGATAATTTGTCGAAAAATGCCCCCTTCGACAAATTTATCGACAATTTGTCAACAAAATTTTGTCGATAAATTTGTCGATAAATTACTTTCGACAAATTTATCGATAATTTGTCAGGTGAATTTATCGACGAAATCGGAAAATCTTTGTCGATAAGGCACACTGGTACTATTCTATCAATCGGTTGCAGGAAAACCAATTCAAATAGGCAGATTCTAGGGATTCAGAGCTTTTAAAGAAAATTCAAAATTTCCGAAAAGTTACTGTTTCAAAAATTTTCAAAAGTTAAAACGCTTTTTCTGAATAATGTTTTGTAGTTATTCATGATTTCCAATGGAACAATTTGAATTTCAGAAATTCCGGAGGGGAAAACGTTTTTAGAAATAGAAATTTTCGAATTCCAACTTGAAAAAAGTTCTATGAGTTTTCGAGAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAATTTTCATAACTGGAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>TGCAACCGATTGATAGAATAG</pcr_primer_p2>
		<pcr_amplicon_size>491</pcr_amplicon_size>
		<canonical_amplicon>TAAAATTTTCATAACTGGAAGAAAACTCAAAATCGGCTCAGAGAATGTACCAGGTGAATTTCTGACCACTTCTAGGTCAAAAATATTGGTGGCCTAGAAAACTCATATTGCAAAAGTAAGGCCACCATGTTAAAATGGCTTAAAAACGCACCATGTTAACATCAGATCTTTTTCAAGTCAAAAAGTTTGGTGACCTAGAAAATTCATGTTGGAAATATTAGGCCACCAGGTCAGATGTCCTAAAAAAATGGTAACGATACAACTTTTTACAAGTAAGTCCGGCGGTTAATAGCAATTTTTTGTCGATAATTTGTCGAAAAATGCCCCCTTCGACAAATTTATCGACAATTTGTCAACAAAATTTTGTCGATAAATTTGTCGATAAATTACTTTCGACAAATTTATCGATAATTTGTCAGGTGAATTTATCGACGAAATCGGAAAATCTTTGTCGATAAGGCACACTGGTACTATTCTATCAATCGGTTGCA</canonical_amplicon>
		<polymorphic_amplicon>TAAAATTTTCATAACTGGAAGAAAACTCAAAATCGGCTCAGAGAATGTACCAGGTGAATTTCTGACCACTTCTAGGTCAAAAATATTGGTGGCCTAGAAAACTCATATTGCAAAAGTAAGGCCACCATGTTAAAATGGCTTAAAAACGCACCATGTTAACATCAGATCTTTTTCAAGTCAAAAAGTTTGGTGACCTAGAAAATTCATGTTGGAAATATTAGGCCACCAGGTCAGATGTYCTAAAAAAATGGTAACGATACAACTTTTTACAAGTAAGTCCGGCGGTTAATAGCAATTTTTTGTCGATAATTTGTCGAAAAATGCCCCCTTCGACAAATTTATCGACAATTTGTCAACAAAATTTTGTCGATAAATTTGTCGATAAATTACTTTCGACAAATTTATCGATAATTTGTCAGGTGAATTTATCGACGAAATCGGAAAATCTTTGTCGATAAGGCACACTGGTACTATTCTATCAATCGGTTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26080</snp_id>
        <super_contig>c002000982.Contig1</super_contig>
        <contig_pos>16594</contig_pos>
        <strand></strand>
        <context>agatgkycta[A/G]aaaaatggta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCTAGAAAATTCATGTTGGAAATATTAGGCCACCAGGTCAGATGTCCTA</left_flank>
        <right_flank>AAAAATGGTAACGATACAACTTTTTACAAGTAAGTCCGGCGGTTAATAGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCAAAATTTCAATTTCCTCGCGATAAGAACTGGGAATATACAATTTTTGAGCTTCAAGATCTGAAAATCCAAAAGTTGTTGAATTTCAAAAAATTACTGTTTCATTTGAAATACTTTATTTTTGGTCGAATTTTCTTAAATTAATGAAACGGTTCAAAAAGAGAAAATCAAGATAATTTAAAGGACATTGAAAAGTCGAATTTATATGAAATTCAACAGAAAAGTGCTGAAAATCGGCAAAAATGGGCAGTCTCATAAAATTTTCATAACTGGAAGAAAACTCAAAATCGGCTCAGAGAATGTACCAGGTGAATTTCTGACCACTTCTAGGTCAAAAATATTGGTGGCCTAGAAAACTCATATTGCAAAAGTAAGGCCACCATGTTAAAATGGCTTAAAAACGCACCATGTTAACATCAGATCTTTTTCAAGTCAAAAAGTTTGGTGACCTAGAAAATTCATGTTGGAAATATTAGGCCACCAGGTCAGATGTCCTAAAAAAATGGTAACGATACAACTTTTTACAAGTAAGTCCGGCGGTTAATAGCAATTTTTTGTCGATAATTTGTCGAAAAATGCCCCCTTCGACAAATTTATCGACAATTTGTCAACAAAATTTTGTCGATAAATTTGTCGATAAATTACTTTCGACAAATTTATCGATAATTTGTCAGGTGAATTTATCGACGAAATCGGAAAATCTTTGTCGATAAGGCACACTGGTACTATTCTATCAATCGGTTGCAGGAAAACCAATTCAAATAGGCAGATTCTAGGGATTCAGAGCTTTTAAAGAAAATTCAAAATTTCCGAAAAGTTACTGTTTCAAAAATTTTCAAAAGTTAAAACGCTTTTTCTGAATAATGTTTTGTAGTTATTCATGATTTCCAATGGAACAATTTGAATTTCAGAAATTCCGGAGGGGAAAACGTTTTTAGAAATAGAAATTTTCGAATTCCAACTTGAAAAAAGTTCTATGAGTTTTCGAGAATTTTGGA</canonical>
            <polymorphic>TTCCAAAATTTCAATTTCCTCGCGATAAGAACTGGGAATATACAATTTTTGAGCTTCAAGATCTGAAAATCCAAAAGTTGTTGAATTTCAAAAAATTACTGTTTCATTTGAAATACTTTATTTTTGGTCGAATTTTCTTAAATTAATGAAACGGTTCAAAAAGAGAAAATCAAGATAATTTAAAGGACATTGAAAAGTCGAATTTATATGAAATTCAACAGAAAAGTGCTGAAAATCGGCAAAAATGGGCAGTCTCATAAAATTTTCATAACTGGAAGAAAACTCAAAATCGGCTCAGAGAATGTACCAGGTGAATTTCTGACCACTTCTAGGTCAAAAATATTGGTGGCCTAGAAAACTCATATTGCAAAAGTAAGGCCACCATGTTAAAATGGCTTAAAAACGCACCATGTTAACATCAGATCTTTTTCAAGTCAAAAAGTTTGGTGACCTAGAAAATTCATGTTGGAAATATTAGGCCACCAGGTCAGATGTCCTARAAAAATGGTAACGATACAACTTTTTACAAGTAAGTCCGGCGGTTAATAGCAATTTTTTGTCGATAATTTGTCGAAAAATGCCCCCTTCGACAAATTTATCGACAATTTGTCAACAAAATTTTGTCGATAAATTTGTCGATAAATTACTTTCGACAAATTTATCGATAATTTGTCAGGTGAATTTATCGACGAAATCGGAAAATCTTTGTCGATAAGGCACACTGGTACTATTCTATCAATCGGTTGCAGGAAAACCAATTCAAATAGGCAGATTCTAGGGATTCAGAGCTTTTAAAGAAAATTCAAAATTTCCGAAAAGTTACTGTTTCAAAAATTTTCAAAAGTTAAAACGCTTTTTCTGAATAATGTTTTGTAGTTATTCATGATTTCCAATGGAACAATTTGAATTTCAGAAATTCCGGAGGGGAAAACGTTTTTAGAAATAGAAATTTTCGAATTCCAACTTGAAAAAAGTTCTATGAGTTTTCGAGAATTTTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAATTTTCATAACTGGAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>TGCAACCGATTGATAGAATAG</pcr_primer_p2>
		<pcr_amplicon_size>491</pcr_amplicon_size>
		<canonical_amplicon>TAAAATTTTCATAACTGGAAGAAAACTCAAAATCGGCTCAGAGAATGTACCAGGTGAATTTCTGACCACTTCTAGGTCAAAAATATTGGTGGCCTAGAAAACTCATATTGCAAAAGTAAGGCCACCATGTTAAAATGGCTTAAAAACGCACCATGTTAACATCAGATCTTTTTCAAGTCAAAAAGTTTGGTGACCTAGAAAATTCATGTTGGAAATATTAGGCCACCAGGTCAGATGTCCTAAAAAAATGGTAACGATACAACTTTTTACAAGTAAGTCCGGCGGTTAATAGCAATTTTTTGTCGATAATTTGTCGAAAAATGCCCCCTTCGACAAATTTATCGACAATTTGTCAACAAAATTTTGTCGATAAATTTGTCGATAAATTACTTTCGACAAATTTATCGATAATTTGTCAGGTGAATTTATCGACGAAATCGGAAAATCTTTGTCGATAAGGCACACTGGTACTATTCTATCAATCGGTTGCA</canonical_amplicon>
		<polymorphic_amplicon>TAAAATTTTCATAACTGGAAGAAAACTCAAAATCGGCTCAGAGAATGTACCAGGTGAATTTCTGACCACTTCTAGGTCAAAAATATTGGTGGCCTAGAAAACTCATATTGCAAAAGTAAGGCCACCATGTTAAAATGGCTTAAAAACGCACCATGTTAACATCAGATCTTTTTCAAGTCAAAAAGTTTGGTGACCTAGAAAATTCATGTTGGAAATATTAGGCCACCAGGTCAGATGTCCTARAAAAATGGTAACGATACAACTTTTTACAAGTAAGTCCGGCGGTTAATAGCAATTTTTTGTCGATAATTTGTCGAAAAATGCCCCCTTCGACAAATTTATCGACAATTTGTCAACAAAATTTTGTCGATAAATTTGTCGATAAATTACTTTCGACAAATTTATCGATAATTTGTCAGGTGAATTTATCGACGAAATCGGAAAATCTTTGTCGATAAGGCACACTGGTACTATTCTATCAATCGGTTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26081</snp_id>
        <super_contig>c002000982.Contig1</super_contig>
        <contig_pos>16614</contig_pos>
        <strand></strand>
        <context>aacgatacaa[C/T]tttttacaag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATATTAGGCCACCAGGTCAGATGTCCTAAAAAAATGGTAACGATACAA</left_flank>
        <right_flank>TTTTTACAAGTAAGTCCGGCGGTTAATAGCAATTTTTTGTCGATAATTTG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCGATAAGAACTGGGAATATACAATTTTTGAGCTTCAAGATCTGAAAATCCAAAAGTTGTTGAATTTCAAAAAATTACTGTTTCATTTGAAATACTTTATTTTTGGTCGAATTTTCTTAAATTAATGAAACGGTTCAAAAAGAGAAAATCAAGATAATTTAAAGGACATTGAAAAGTCGAATTTATATGAAATTCAACAGAAAAGTGCTGAAAATCGGCAAAAATGGGCAGTCTCATAAAATTTTCATAACTGGAAGAAAACTCAAAATCGGCTCAGAGAATGTACCAGGTGAATTTCTGACCACTTCTAGGTCAAAAATATTGGTGGCCTAGAAAACTCATATTGCAAAAGTAAGGCCACCATGTTAAAATGGCTTAAAAACGCACCATGTTAACATCAGATCTTTTTCAAGTCAAAAAGTTTGGTGACCTAGAAAATTCATGTTGGAAATATTAGGCCACCAGGTCAGATGTCCTAAAAAAATGGTAACGATACAACTTTTTACAAGTAAGTCCGGCGGTTAATAGCAATTTTTTGTCGATAATTTGTCGAAAAATGCCCCCTTCGACAAATTTATCGACAATTTGTCAACAAAATTTTGTCGATAAATTTGTCGATAAATTACTTTCGACAAATTTATCGATAATTTGTCAGGTGAATTTATCGACGAAATCGGAAAATCTTTGTCGATAAGGCACACTGGTACTATTCTATCAATCGGTTGCAGGAAAACCAATTCAAATAGGCAGATTCTAGGGATTCAGAGCTTTTAAAGAAAATTCAAAATTTCCGAAAAGTTACTGTTTCAAAAATTTTCAAAAGTTAAAACGCTTTTTCTGAATAATGTTTTGTAGTTATTCATGATTTCCAATGGAACAATTTGAATTTCAGAAATTCCGGAGGGGAAAACGTTTTTAGAAATAGAAATTTTCGAATTCCAACTTGAAAAAAGTTCTATGAGTTTTCGAGAATTTTGGAACATAGAAAATTCGATTTCT</canonical>
            <polymorphic>CGCGATAAGAACTGGGAATATACAATTTTTGAGCTTCAAGATCTGAAAATCCAAAAGTTGTTGAATTTCAAAAAATTACTGTTTCATTTGAAATACTTTATTTTTGGTCGAATTTTCTTAAATTAATGAAACGGTTCAAAAAGAGAAAATCAAGATAATTTAAAGGACATTGAAAAGTCGAATTTATATGAAATTCAACAGAAAAGTGCTGAAAATCGGCAAAAATGGGCAGTCTCATAAAATTTTCATAACTGGAAGAAAACTCAAAATCGGCTCAGAGAATGTACCAGGTGAATTTCTGACCACTTCTAGGTCAAAAATATTGGTGGCCTAGAAAACTCATATTGCAAAAGTAAGGCCACCATGTTAAAATGGCTTAAAAACGCACCATGTTAACATCAGATCTTTTTCAAGTCAAAAAGTTTGGTGACCTAGAAAATTCATGTTGGAAATATTAGGCCACCAGGTCAGATGTCCTAAAAAAATGGTAACGATACAAYTTTTTACAAGTAAGTCCGGCGGTTAATAGCAATTTTTTGTCGATAATTTGTCGAAAAATGCCCCCTTCGACAAATTTATCGACAATTTGTCAACAAAATTTTGTCGATAAATTTGTCGATAAATTACTTTCGACAAATTTATCGATAATTTGTCAGGTGAATTTATCGACGAAATCGGAAAATCTTTGTCGATAAGGCACACTGGTACTATTCTATCAATCGGTTGCAGGAAAACCAATTCAAATAGGCAGATTCTAGGGATTCAGAGCTTTTAAAGAAAATTCAAAATTTCCGAAAAGTTACTGTTTCAAAAATTTTCAAAAGTTAAAACGCTTTTTCTGAATAATGTTTTGTAGTTATTCATGATTTCCAATGGAACAATTTGAATTTCAGAAATTCCGGAGGGGAAAACGTTTTTAGAAATAGAAATTTTCGAATTCCAACTTGAAAAAAGTTCTATGAGTTTTCGAGAATTTTGGAACATAGAAAATTCGATTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAATTTTCATAACTGGAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>TGCAACCGATTGATAGAATAG</pcr_primer_p2>
		<pcr_amplicon_size>491</pcr_amplicon_size>
		<canonical_amplicon>TAAAATTTTCATAACTGGAAGAAAACTCAAAATCGGCTCAGAGAATGTACCAGGTGAATTTCTGACCACTTCTAGGTCAAAAATATTGGTGGCCTAGAAAACTCATATTGCAAAAGTAAGGCCACCATGTTAAAATGGCTTAAAAACGCACCATGTTAACATCAGATCTTTTTCAAGTCAAAAAGTTTGGTGACCTAGAAAATTCATGTTGGAAATATTAGGCCACCAGGTCAGATGTCCTAAAAAAATGGTAACGATACAACTTTTTACAAGTAAGTCCGGCGGTTAATAGCAATTTTTTGTCGATAATTTGTCGAAAAATGCCCCCTTCGACAAATTTATCGACAATTTGTCAACAAAATTTTGTCGATAAATTTGTCGATAAATTACTTTCGACAAATTTATCGATAATTTGTCAGGTGAATTTATCGACGAAATCGGAAAATCTTTGTCGATAAGGCACACTGGTACTATTCTATCAATCGGTTGCA</canonical_amplicon>
		<polymorphic_amplicon>TAAAATTTTCATAACTGGAAGAAAACTCAAAATCGGCTCAGAGAATGTACCAGGTGAATTTCTGACCACTTCTAGGTCAAAAATATTGGTGGCCTAGAAAACTCATATTGCAAAAGTAAGGCCACCATGTTAAAATGGCTTAAAAACGCACCATGTTAACATCAGATCTTTTTCAAGTCAAAAAGTTTGGTGACCTAGAAAATTCATGTTGGAAATATTAGGCCACCAGGTCAGATGTCCTAAAAAAATGGTAACGATACAAYTTTTTACAAGTAAGTCCGGCGGTTAATAGCAATTTTTTGTCGATAATTTGTCGAAAAATGCCCCCTTCGACAAATTTATCGACAATTTGTCAACAAAATTTTGTCGATAAATTTGTCGATAAATTACTTTCGACAAATTTATCGATAATTTGTCAGGTGAATTTATCGACGAAATCGGAAAATCTTTGTCGATAAGGCACACTGGTACTATTCTATCAATCGGTTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26082</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>7983</contig_pos>
        <strand>+</strand>
        <context>CTCGCAGTGC[C/T]CACTATGAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTACAGTAACCCGCAATCCCAAATATTGCAGATCTACGCTCGCAGTGC</left_flank>
        <right_flank>CACTATGAACGAGGTGCCGTTGTTGCTGAAATCGACTTTTTCGATACCAC</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACACACACGGCCGCAAAAAACTTTACAATTTTTTAGTGATTAGGCTTTTCAACATTTTTATGGCTTTAAACAAAAAACTGAAACGCTAAAAAACTTAAGAGAGCACTATAGAGGAGGGACCGGAACAATAATAACAAATCAGAAAAAAAATTGTTCTTCGATTCCAGGCTTCGATAGTGTTGACGAGGACAACTTCCAGAGATTCACTAGATGGTACAAAGGCCGAGTGAAGATTTCGGTAGCTCAAAAAGTTCGAAAAACATCCCTAGCTATAATTTTTCAGGATGTGACCCCAGACTATGTTCAACTCGTCAACAGAAGCTCTAAGAAATCGGCAGACGTTGGTGGATTCCGACTGATTCATGAGTTCGGGAACAGGAGTGTATTCGTTGATCTTCCAGTAGGACTCATCCTTAAGCCTAAGGAGTGCTTGAAGGTATTTGGTTAAAATTACAGTAACCCGCAATCCCAAATATTGCAGATCTACGCTCGCAGTGCTCACTATGAACGAGGTGCCGTTGTTGCTGAAATCGACTTTTTCGATACCACCATCCATACCAATACATCAATCAGAAACACGAATAATGAGGTAAGACAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGGGGCCGAGTTTTTATGATTTATGAACCGGTAAACACATGTTGATTGACATCTGGCCTGGCACCAGAATTGTATTTATAGAGAATAATGTATTCCAGGTAAAATCGTGGTTTGTTTACACCAGCAATACCGAGATTGCGGATGGAGAGAGTCATCAGCACAACTAAATTTTCTCCTCTTTTTCTTCTTGTAATCCTCGATTTCTCGCATTTATGATACCCCCTAATTATCCATTTGAACCCCAAAATCTCTTCTTATCCCCCTTCACTCTTTCTTCATTTCCTTTTTTTTTGCTCTGAAATTTTCTAGTTGAATAAAGTAAGCCGACCAAGTCCCCATTTCCTCTTTTTTCCCTTTTTTTT</canonical>
            <polymorphic>TACACACACGGCCGCAAAAAACTTTACAATTTTTTAGTGATTAGGCTTTTCAACATTTTTATGGCTTTAAACAAAAAACTGAAACGCTAAAAAACTTAAGAGAGCACTATAGAGGAGGGACCGGAACAATAATAACAAATCAGAAAAAAAATTGTTCTTCGATTCCAGGCTTCGATAGTGTTGACGAGGACAACTTCCAGAGATTCACTAGATGGTACAAAGGCCGAGTGAAGATTTCGGTAGCTCAAAAAGTTCGAAAAACATCCCTAGCTATAATTTTTCAGGATGTGACCCCAGACTATGTTCAACTCGTCAACAGAAGCTCTAAGAAATCGGCAGACGTTGGTGGATTCCGACTGATTCATGAGTTCGGGAACAGGAGTGTATTCGTTGATCTTCCAGTAGGACTCATCCTTAAGCCTAAGGAGTGCTTGAAGGTATTTGGTTAAAATTACAGTAACCCGCAATCCCAAATATTGCAGATCTACGCTCGCAGTGCYCACTATGAACGAGGTGCCGTTGTTGCTGAAATCGACTTTTTCGATACCACCATCCATACCAATACATCAATCAGAAACACGAATAATGAGGTAAGACAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGGGGCCGAGTTTTTATGATTTATGAACCGGTAAACACATGTTGATTGACATCTGGCCTGGCACCAGAATTGTATTTATAGAGAATAATGTATTCCAGGTAAAATCGTGGTTTGTTTACACCAGCAATACCGAGATTGCGGATGGAGAGAGTCATCAGCACAACTAAATTTTCTCCTCTTTTTCTTCTTGTAATCCTCGATTTCTCGCATTTATGATACCCCCTAATTATCCATTTGAACCCCAAAATCTCTTCTTATCCCCCTTCACTCTTTCTTCATTTCCTTTTTTTTTGCTCTGAAATTTTCTAGTTGAATAAAGTAAGCCGACCAAGTCCCCATTTCCTCTTTTTTCCCTTTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 394 106</canonical_bands>
                <polymorphic_bands>894 106</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>500 394 106</canonical_bands>
                <polymorphic_bands>894 106</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAAGGAGTGCTTGAAGGTATTT</pcr_primer_p1>
		<pcr_primer_p2>TACCGGTTCATAAATCATAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTAAGGAGTGCTTGAAGGTATTTGGTTAAAATTACAGTAACCCGCAATCCCAAATATTGCAGATCTACGCTCGCAGTGCTCACTATGAACGAGGTGCCGTTGTTGCTGAAATCGACTTTTTCGATACCACCATCCATACCAATACATCAATCAGAAACACGAATAATGAGGTAAGACAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGGGGCCGAGTTTTTATGATTTATGAACCGGTA</canonical_amplicon>
		<polymorphic_amplicon>CTAAGGAGTGCTTGAAGGTATTTGGTTAAAATTACAGTAACCCGCAATCCCAAATATTGCAGATCTACGCTCGCAGTGCYCACTATGAACGAGGTGCCGTTGTTGCTGAAATCGACTTTTTCGATACCACCATCCATACCAATACATCAATCAGAAACACGAATAATGAGGTAAGACAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGGGGCCGAGTTTTTATGATTTATGAACCGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26083</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>8121</contig_pos>
        <strand></strand>
        <context>agagagagag[G/A]GGGGGCCGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAGGTAAGACAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG</left_flank>
        <right_flank>GGGGGCCGAGTTTTTATGATTTATGAACCGGTAAACACATGTTGATTGAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAGAAAAAAAATTGTTCTTCGATTCCAGGCTTCGATAGTGTTGACGAGGACAACTTCCAGAGATTCACTAGATGGTACAAAGGCCGAGTGAAGATTTCGGTAGCTCAAAAAGTTCGAAAAACATCCCTAGCTATAATTTTTCAGGATGTGACCCCAGACTATGTTCAACTCGTCAACAGAAGCTCTAAGAAATCGGCAGACGTTGGTGGATTCCGACTGATTCATGAGTTCGGGAACAGGAGTGTATTCGTTGATCTTCCAGTAGGACTCATCCTTAAGCCTAAGGAGTGCTTGAAGGTATTTGGTTAAAATTACAGTAACCCGCAATCCCAAATATTGCAGATCTACGCTCGCAGTGCTCACTATGAACGAGGTGCCGTTGTTGCTGAAATCGACTTTTTCGATACCACCATCCATACCAATACATCAATCAGAAACACGAATAATGAGGTAAGACAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGGGGCCGAGTTTTTATGATTTATGAACCGGTAAACACATGTTGATTGACATCTGGCCTGGCACCAGAATTGTATTTATAGAGAATAATGTATTCCAGGTAAAATCGTGGTTTGTTTACACCAGCAATACCGAGATTGCGGATGGAGAGAGTCATCAGCACAACTAAATTTTCTCCTCTTTTTCTTCTTGTAATCCTCGATTTCTCGCATTTATGATACCCCCTAATTATCCATTTGAACCCCAAAATCTCTTCTTATCCCCCTTCACTCTTTCTTCATTTCCTTTTTTTTTGCTCTGAAATTTTCTAGTTGAATAAAGTAAGCCGACCAAGTCCCCATTTCCTCTTTTTTCCCTTTTTTTTCTTTTTCCACATAAATTTCATATTCTATGTGGATTAAAAAATAAACGTATTACTCTCTTTTTCTCTTCGCTCAGAAAGAAACAAATTCGATTATAAACATTTGGTCCTATTGAGAAACATTTGAAAATTTTGTTTCAA</canonical>
            <polymorphic>ATCAGAAAAAAAATTGTTCTTCGATTCCAGGCTTCGATAGTGTTGACGAGGACAACTTCCAGAGATTCACTAGATGGTACAAAGGCCGAGTGAAGATTTCGGTAGCTCAAAAAGTTCGAAAAACATCCCTAGCTATAATTTTTCAGGATGTGACCCCAGACTATGTTCAACTCGTCAACAGAAGCTCTAAGAAATCGGCAGACGTTGGTGGATTCCGACTGATTCATGAGTTCGGGAACAGGAGTGTATTCGTTGATCTTCCAGTAGGACTCATCCTTAAGCCTAAGGAGTGCTTGAAGGTATTTGGTTAAAATTACAGTAACCCGCAATCCCAAATATTGCAGATCTACGCTCGCAGTGCTCACTATGAACGAGGTGCCGTTGTTGCTGAAATCGACTTTTTCGATACCACCATCCATACCAATACATCAATCAGAAACACGAATAATGAGGTAAGACAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGRGGGGGCCGAGTTTTTATGATTTATGAACCGGTAAACACATGTTGATTGACATCTGGCCTGGCACCAGAATTGTATTTATAGAGAATAATGTATTCCAGGTAAAATCGTGGTTTGTTTACACCAGCAATACCGAGATTGCGGATGGAGAGAGTCATCAGCACAACTAAATTTTCTCCTCTTTTTCTTCTTGTAATCCTCGATTTCTCGCATTTATGATACCCCCTAATTATCCATTTGAACCCCAAAATCTCTTCTTATCCCCCTTCACTCTTTCTTCATTTCCTTTTTTTTTGCTCTGAAATTTTCTAGTTGAATAAAGTAAGCCGACCAAGTCCCCATTTCCTCTTTTTTCCCTTTTTTTTCTTTTTCCACATAAATTTCATATTCTATGTGGATTAAAAAATAAACGTATTACTCTCTTTTTCTCTTCGCTCAGAAAGAAACAAATTCGATTATAAACATTTGGTCCTATTGAGAAACATTTGAAAATTTTGTTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCAATACATCAATCAGAAACAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTAGTTGTGCTGATGACTCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCAATACATCAATCAGAAACACGAATAATGAGGTAAGACAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGGGGCCGAGTTTTTATGATTTATGAACCGGTAAACACATGTTGATTGACATCTGGCCTGGCACCAGAATTGTATTTATAGAGAATAATGTATTCCAGGTAAAATCGTGGTTTGTTTACACCAGCAATACCGAGATTGCGGATGGAGAGAGTCATCAGCACAACTAAAT</canonical_amplicon>
		<polymorphic_amplicon>ACCAATACATCAATCAGAAACACGAATAATGAGGTAAGACAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGRGGGGGCCGAGTTTTTATGATTTATGAACCGGTAAACACATGTTGATTGACATCTGGCCTGGCACCAGAATTGTATTTATAGAGAATAATGTATTCCAGGTAAAATCGTGGTTTGTTTACACCAGCAATACCGAGATTGCGGATGGAGAGAGTCATCAGCACAACTAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26084</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>101263</contig_pos>
        <strand>+</strand>
        <context>TGTCTTCATA[A/G]ATGTTTCCGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGGCAACCACAAAGTAGACCGATTCATCATCGGCATCAATGTCTTCATA</left_flank>
        <right_flank>ATGTTTCCGTCGGTGTACCATGGTCCCTTTGGAGGCTCCCAGACCTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTGATAAAATAATGGTGATATTATGACAAACATTTTATCAGTTGACAGATTTTCGCTATCTCTTGAAGAAGTTGAGATAATTGAGCTTAAAGTGAGAATATATAGATGGAATTTTACTAGAGAAAACACGGTATGCTTAATTTTTTATCTCTATCAAGTTGAATGGACCCATCAATGAACTAAACTGTTTTTGGAAAGTTTGCTCCCTTCACTAACCTGAACAGTTTGTACCATGGTCGCCTTTTGGTCTTCTTCAATTTCTTCTTCTCCTCATACTCTTTCTTGCATGCCGCCTTCATTTCCATGTGCAGTTTTTTGGCCTCATTTTTCACCGTCTTTTCCAATTGCTTTCTTTCCTTCTCCGCCAATTTAGCCAAGACCTTCTTCTCCTTCTTCTCCTCTTTCGACATAGATTTAGAGTCCATGTATTTCTTCTTGTACTTCTTGATGGCAACCACAAAGTAGACCGATTCATCATCGGCATCAATGTCTTCATAAATGTTTCCGTCGGTGTACCATGGTCCCTTTGGAGGCTCCCAGACCTTTTTGTTGTAGACGATCGCGTAGCCATAGTTGGAAGTGGGGTCCACACCTTCTAGTAGGGACTTTTCGGCATCCTCACCAAACGATGTATCCACAGAAAATGTAGAGTCGTCGTATGGAATGTCAGAGTCGGACTCGCAAACAACTTCTTCGGTTTTCTGAATGCTAGAGAAAACACTGACCGGTTGTTGACGAGAAGAGTCCGAGCAAACGACATCCATGGTTGGTGGTGGTGCGGGAATTTCCATGTAGTCCTCAGTAGATGAGTCCAACTCTCCAACTGAGAATCCAGAAGAATTCAGTGAAGAATCCAGAAAATCGTAGGGGACGTATGCTTTGACAAACTGGGCTTTCTCTTTTACAACAGCCTTTCCATTATCAAAATCATAGCCAGCGAACATGAGGAAGAACCGTATGAAGGTCCAATTGGGGTTGATCTGAGAGTAAACGGCATC</canonical>
            <polymorphic>AACTGATAAAATAATGGTGATATTATGACAAACATTTTATCAGTTGACAGATTTTCGCTATCTCTTGAAGAAGTTGAGATAATTGAGCTTAAAGTGAGAATATATAGATGGAATTTTACTAGAGAAAACACGGTATGCTTAATTTTTTATCTCTATCAAGTTGAATGGACCCATCAATGAACTAAACTGTTTTTGGAAAGTTTGCTCCCTTCACTAACCTGAACAGTTTGTACCATGGTCGCCTTTTGGTCTTCTTCAATTTCTTCTTCTCCTCATACTCTTTCTTGCATGCCGCCTTCATTTCCATGTGCAGTTTTTTGGCCTCATTTTTCACCGTCTTTTCCAATTGCTTTCTTTCCTTCTCCGCCAATTTAGCCAAGACCTTCTTCTCCTTCTTCTCCTCTTTCGACATAGATTTAGAGTCCATGTATTTCTTCTTGTACTTCTTGATGGCAACCACAAAGTAGACCGATTCATCATCGGCATCAATGTCTTCATARATGTTTCCGTCGGTGTACCATGGTCCCTTTGGAGGCTCCCAGACCTTTTTGTTGTAGACGATCGCGTAGCCATAGTTGGAAGTGGGGTCCACACCTTCTAGTAGGGACTTTTCGGCATCCTCACCAAACGATGTATCCACAGAAAATGTAGAGTCGTCGTATGGAATGTCAGAGTCGGACTCGCAAACAACTTCTTCGGTTTTCTGAATGCTAGAGAAAACACTGACCGGTTGTTGACGAGAAGAGTCCGAGCAAACGACATCCATGGTTGGTGGTGGTGCGGGAATTTCCATGTAGTCCTCAGTAGATGAGTCCAACTCTCCAACTGAGAATCCAGAAGAATTCAGTGAAGAATCCAGAAAATCGTAGGGGACGTATGCTTTGACAAACTGGGCTTTCTCTTTTACAACAGCCTTTCCATTATCAAAATCATAGCCAGCGAACATGAGGAAGAACCGTATGAAGGTCCAATTGGGGTTGATCTGAGAGTAAACGGCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTCTTTCGACATAGATTTAGAG</pcr_primer_p1>
		<pcr_primer_p2>TACATTTTCTGTGGATACATCGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCTCTTTCGACATAGATTTAGAGTCCATGTATTTCTTCTTGTACTTCTTGATGGCAACCACAAAGTAGACCGATTCATCATCGGCATCAATGTCTTCATAAATGTTTCCGTCGGTGTACCATGGTCCCTTTGGAGGCTCCCAGACCTTTTTGTTGTAGACGATCGCGTAGCCATAGTTGGAAGTGGGGTCCACACCTTCTAGTAGGGACTTTTCGGCATCCTCACCAAACGATGTATCCACAGAAAATGTA</canonical_amplicon>
		<polymorphic_amplicon>CCTCTTTCGACATAGATTTAGAGTCCATGTATTTCTTCTTGTACTTCTTGATGGCAACCACAAAGTAGACCGATTCATCATCGGCATCAATGTCTTCATARATGTTTCCGTCGGTGTACCATGGTCCCTTTGGAGGCTCCCAGACCTTTTTGTTGTAGACGATCGCGTAGCCATAGTTGGAAGTGGGGTCCACACCTTCTAGTAGGGACTTTTCGGCATCCTCACCAAACGATGTATCCACAGAAAATGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26085</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>101424</contig_pos>
        <strand>+</strand>
        <context>GAGTCGTCGT[A/G]TGGAATGTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGGCATCCTCACCAAACGATGTATCCACAGAAAATGTAGAGTCGTCGT</left_flank>
        <right_flank>TGGAATGTCAGAGTCGGACTCGCAAACAACTTCTTCGGTTTTCTGAATGC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAATGGACCCATCAATGAACTAAACTGTTTTTGGAAAGTTTGCTCCCTTCACTAACCTGAACAGTTTGTACCATGGTCGCCTTTTGGTCTTCTTCAATTTCTTCTTCTCCTCATACTCTTTCTTGCATGCCGCCTTCATTTCCATGTGCAGTTTTTTGGCCTCATTTTTCACCGTCTTTTCCAATTGCTTTCTTTCCTTCTCCGCCAATTTAGCCAAGACCTTCTTCTCCTTCTTCTCCTCTTTCGACATAGATTTAGAGTCCATGTATTTCTTCTTGTACTTCTTGATGGCAACCACAAAGTAGACCGATTCATCATCGGCATCAATGTCTTCATAAATGTTTCCGTCGGTGTACCATGGTCCCTTTGGAGGCTCCCAGACCTTTTTGTTGTAGACGATCGCGTAGCCATAGTTGGAAGTGGGGTCCACACCTTCTAGTAGGGACTTTTCGGCATCCTCACCAAACGATGTATCCACAGAAAATGTAGAGTCGTCGTATGGAATGTCAGAGTCGGACTCGCAAACAACTTCTTCGGTTTTCTGAATGCTAGAGAAAACACTGACCGGTTGTTGACGAGAAGAGTCCGAGCAAACGACATCCATGGTTGGTGGTGGTGCGGGAATTTCCATGTAGTCCTCAGTAGATGAGTCCAACTCTCCAACTGAGAATCCAGAAGAATTCAGTGAAGAATCCAGAAAATCGTAGGGGACGTATGCTTTGACAAACTGGGCTTTCTCTTTTACAACAGCCTTTCCATTATCAAAATCATAGCCAGCGAACATGAGGAAGAACCGTATGAAGGTCCAATTGGGGTTGATCTGAGAGTAAACGGCATCCTGGAGGCCGTCCTCTCTGCTCGACTCCCAAATAGTTGGTGGAATACAGCATTGAGGGAAGCGGCGTAGAATACGCGGCATCTCTGTGCCGAATGACCAAATGAAGTGAACTATCACTGCTCCGACAGGGCAGTGGGCGTGTCTTGCCGAGTCCTTTGTCG</canonical>
            <polymorphic>TGAATGGACCCATCAATGAACTAAACTGTTTTTGGAAAGTTTGCTCCCTTCACTAACCTGAACAGTTTGTACCATGGTCGCCTTTTGGTCTTCTTCAATTTCTTCTTCTCCTCATACTCTTTCTTGCATGCCGCCTTCATTTCCATGTGCAGTTTTTTGGCCTCATTTTTCACCGTCTTTTCCAATTGCTTTCTTTCCTTCTCCGCCAATTTAGCCAAGACCTTCTTCTCCTTCTTCTCCTCTTTCGACATAGATTTAGAGTCCATGTATTTCTTCTTGTACTTCTTGATGGCAACCACAAAGTAGACCGATTCATCATCGGCATCAATGTCTTCATAAATGTTTCCGTCGGTGTACCATGGTCCCTTTGGAGGCTCCCAGACCTTTTTGTTGTAGACGATCGCGTAGCCATAGTTGGAAGTGGGGTCCACACCTTCTAGTAGGGACTTTTCGGCATCCTCACCAAACGATGTATCCACAGAAAATGTAGAGTCGTCGTRTGGAATGTCAGAGTCGGACTCGCAAACAACTTCTTCGGTTTTCTGAATGCTAGAGAAAACACTGACCGGTTGTTGACGAGAAGAGTCCGAGCAAACGACATCCATGGTTGGTGGTGGTGCGGGAATTTCCATGTAGTCCTCAGTAGATGAGTCCAACTCTCCAACTGAGAATCCAGAAGAATTCAGTGAAGAATCCAGAAAATCGTAGGGGACGTATGCTTTGACAAACTGGGCTTTCTCTTTTACAACAGCCTTTCCATTATCAAAATCATAGCCAGCGAACATGAGGAAGAACCGTATGAAGGTCCAATTGGGGTTGATCTGAGAGTAAACGGCATCCTGGAGGCCGTCCTCTCTGCTCGACTCCCAAATAGTTGGTGGAATACAGCATTGAGGGAAGCGGCGTAGAATACGCGGCATCTCTGTGCCGAATGACCAAATGAAGTGAACTATCACTGCTCCGACAGGGCAGTGGGCGTGTCTTGCCGAGTCCTTTGTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACCTTCTAGTAGGGACTTTTC</pcr_primer_p1>
		<pcr_primer_p2>AATTCTTCTGGATTCTCAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ACACCTTCTAGTAGGGACTTTTCGGCATCCTCACCAAACGATGTATCCACAGAAAATGTAGAGTCGTCGTATGGAATGTCAGAGTCGGACTCGCAAACAACTTCTTCGGTTTTCTGAATGCTAGAGAAAACACTGACCGGTTGTTGACGAGAAGAGTCCGAGCAAACGACATCCATGGTTGGTGGTGGTGCGGGAATTTCCATGTAGTCCTCAGTAGATGAGTCCAACTCTCCAACTGAGAATCCAGAAGAATT</canonical_amplicon>
		<polymorphic_amplicon>ACACCTTCTAGTAGGGACTTTTCGGCATCCTCACCAAACGATGTATCCACAGAAAATGTAGAGTCGTCGTRTGGAATGTCAGAGTCGGACTCGCAAACAACTTCTTCGGTTTTCTGAATGCTAGAGAAAACACTGACCGGTTGTTGACGAGAAGAGTCCGAGCAAACGACATCCATGGTTGGTGGTGGTGCGGGAATTTCCATGTAGTCCTCAGTAGATGAGTCCAACTCTCCAACTGAGAATCCAGAAGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26086</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>101469</contig_pos>
        <strand>+</strand>
        <context>TCGGTTTTCT[G/T]AATGCTAGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTCGTATGGAATGTCAGAGTCGGACTCGCAAACAACTTCTTCGGTTTTCT</left_flank>
        <right_flank>AATGCTAGAGAAAACACTGACCGGTTGTTGACGAGAAGAGTCCGAGCAAA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCTTCACTAACCTGAACAGTTTGTACCATGGTCGCCTTTTGGTCTTCTTCAATTTCTTCTTCTCCTCATACTCTTTCTTGCATGCCGCCTTCATTTCCATGTGCAGTTTTTTGGCCTCATTTTTCACCGTCTTTTCCAATTGCTTTCTTTCCTTCTCCGCCAATTTAGCCAAGACCTTCTTCTCCTTCTTCTCCTCTTTCGACATAGATTTAGAGTCCATGTATTTCTTCTTGTACTTCTTGATGGCAACCACAAAGTAGACCGATTCATCATCGGCATCAATGTCTTCATAAATGTTTCCGTCGGTGTACCATGGTCCCTTTGGAGGCTCCCAGACCTTTTTGTTGTAGACGATCGCGTAGCCATAGTTGGAAGTGGGGTCCACACCTTCTAGTAGGGACTTTTCGGCATCCTCACCAAACGATGTATCCACAGAAAATGTAGAGTCGTCGTATGGAATGTCAGAGTCGGACTCGCAAACAACTTCTTCGGTTTTCTGAATGCTAGAGAAAACACTGACCGGTTGTTGACGAGAAGAGTCCGAGCAAACGACATCCATGGTTGGTGGTGGTGCGGGAATTTCCATGTAGTCCTCAGTAGATGAGTCCAACTCTCCAACTGAGAATCCAGAAGAATTCAGTGAAGAATCCAGAAAATCGTAGGGGACGTATGCTTTGACAAACTGGGCTTTCTCTTTTACAACAGCCTTTCCATTATCAAAATCATAGCCAGCGAACATGAGGAAGAACCGTATGAAGGTCCAATTGGGGTTGATCTGAGAGTAAACGGCATCCTGGAGGCCGTCCTCTCTGCTCGACTCCCAAATAGTTGGTGGAATACAGCATTGAGGGAAGCGGCGTAGAATACGCGGCATCTCTGTGCCGAATGACCAAATGAAGTGAACTATCACTGCTCCGACAGGGCAGTGGGCGTGTCTTGCCGAGTCCTTTGTCGCCGGCGCCGCCACTGGGACCGTACGTCGAATGGCGACACGCCCCG</canonical>
            <polymorphic>CCCTTCACTAACCTGAACAGTTTGTACCATGGTCGCCTTTTGGTCTTCTTCAATTTCTTCTTCTCCTCATACTCTTTCTTGCATGCCGCCTTCATTTCCATGTGCAGTTTTTTGGCCTCATTTTTCACCGTCTTTTCCAATTGCTTTCTTTCCTTCTCCGCCAATTTAGCCAAGACCTTCTTCTCCTTCTTCTCCTCTTTCGACATAGATTTAGAGTCCATGTATTTCTTCTTGTACTTCTTGATGGCAACCACAAAGTAGACCGATTCATCATCGGCATCAATGTCTTCATAAATGTTTCCGTCGGTGTACCATGGTCCCTTTGGAGGCTCCCAGACCTTTTTGTTGTAGACGATCGCGTAGCCATAGTTGGAAGTGGGGTCCACACCTTCTAGTAGGGACTTTTCGGCATCCTCACCAAACGATGTATCCACAGAAAATGTAGAGTCGTCGTATGGAATGTCAGAGTCGGACTCGCAAACAACTTCTTCGGTTTTCTKAATGCTAGAGAAAACACTGACCGGTTGTTGACGAGAAGAGTCCGAGCAAACGACATCCATGGTTGGTGGTGGTGCGGGAATTTCCATGTAGTCCTCAGTAGATGAGTCCAACTCTCCAACTGAGAATCCAGAAGAATTCAGTGAAGAATCCAGAAAATCGTAGGGGACGTATGCTTTGACAAACTGGGCTTTCTCTTTTACAACAGCCTTTCCATTATCAAAATCATAGCCAGCGAACATGAGGAAGAACCGTATGAAGGTCCAATTGGGGTTGATCTGAGAGTAAACGGCATCCTGGAGGCCGTCCTCTCTGCTCGACTCCCAAATAGTTGGTGGAATACAGCATTGAGGGAAGCGGCGTAGAATACGCGGCATCTCTGTGCCGAATGACCAAATGAAGTGAACTATCACTGCTCCGACAGGGCAGTGGGCGTGTCTTGCCGAGTCCTTTGTCGCCGGCGCCGCCACTGGGACCGTACGTCGAATGGCGACACGCCCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>465 235 139 83 44 28 6</canonical_bands>
                <polymorphic_bands>465 235 139 83 72 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACACCTTCTAGTAGGGACTTTTC</pcr_primer_p1>
		<pcr_primer_p2>AATTCTTCTGGATTCTCAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ACACCTTCTAGTAGGGACTTTTCGGCATCCTCACCAAACGATGTATCCACAGAAAATGTAGAGTCGTCGTATGGAATGTCAGAGTCGGACTCGCAAACAACTTCTTCGGTTTTCTGAATGCTAGAGAAAACACTGACCGGTTGTTGACGAGAAGAGTCCGAGCAAACGACATCCATGGTTGGTGGTGGTGCGGGAATTTCCATGTAGTCCTCAGTAGATGAGTCCAACTCTCCAACTGAGAATCCAGAAGAATT</canonical_amplicon>
		<polymorphic_amplicon>ACACCTTCTAGTAGGGACTTTTCGGCATCCTCACCAAACGATGTATCCACAGAAAATGTAGAGTCGTCGTATGGAATGTCAGAGTCGGACTCGCAAACAACTTCTTCGGTTTTCTKAATGCTAGAGAAAACACTGACCGGTTGTTGACGAGAAGAGTCCGAGCAAACGACATCCATGGTTGGTGGTGGTGCGGGAATTTCCATGTAGTCCTCAGTAGATGAGTCCAACTCTCCAACTGAGAATCCAGAAGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26087</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>102649</contig_pos>
        <strand>+</strand>
        <context>TAAGAGAGTC[A/G]GCGSCRTGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTC</left_flank>
        <right_flank>GCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAAGAACAACATTGAAGAACAACATCGGGGAGAGAAGCAGGTGGCTTCTGTTTTGTAATTTCACACCTGTCGATGTTTTTTTTTTCAATTTGAACTTCTGCATTTGAATATGGGAAAGTGGGAGGAAGAGAGAAGGGCCCCTCTTGAGGGGGGCCGGAGTATACAAAAAGTTCCGGGGATATTTCGTGGGGAAAATCCTTGTAGTCGATTCCAGATCCACCGAATTATCTGAGACTTTCTGTGGCTTTTCCATTCATCTCGATTCTTCTTAGTCATCGGTTTCCAAACAACTTTCCTTTTTATCATTTTGATAAGAATGTTGTCCCCTATCCAGAATATATCCAATCATTTTTTGCCTTTTTTCCTTTTTAGGCAACTTCGCAAGTTCAAATTCCTCTCCCCTCTCATTAGTGCACCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATA</canonical>
            <polymorphic>TCGAAGAACAACATTGAAGAACAACATCGGGGAGAGAAGCAGGTGGCTTCTGTTTTGTAATTTCACACCTGTCGATGTTTTTTTTTTCAATTTGAACTTCTGCATTTGAATATGGGAAAGTGGGAGGAAGAGAGAAGGGCCCCTCTTGAGGGGGGCCGGAGTATACAAAAAGTTCCGGGGATATTTCGTGGGGAAAATCCTTGTAGTCGATTCCAGATCCACCGAATTATCTGAGACTTTCTGTGGCTTTTCCATTCATCTCGATTCTTCTTAGTCATCGGTTTCCAAACAACTTTCCTTTTTATCATTTTGATAAGAATGTTGTCCCCTATCCAGAATATATCCAATCATTTTTTGCCTTTTTTCCTTTTTAGGCAACTTCGCAAGTTCAAATTCCTCTCCCCTCTCATTAGTGCACCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCRGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCTATCCAGAATATATCCAATC</pcr_primer_p1>
		<pcr_primer_p2>GAAACTTCTAAGACACCATGAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CCCTATCCAGAATATATCCAATCATTTTTTGCCTTTTTTCCTTTTTAGGCAACTTCGCAAGTTCAAATTCCTCTCCCCTCTCATTAGTGCACCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTC</canonical_amplicon>
		<polymorphic_amplicon>CCCTATCCAGAATATATCCAATCATTTTTTGCCTTTTTTCCTTTTTAGGCAACTTCGCAAGTTCAAATTCCTCTCCCCTCTCATTAGTGCACCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCRGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26088</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>102653</contig_pos>
        <strand>+</strand>
        <context>AGAGTCRGCG[C/G]CRTGTTGATA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCG</left_flank>
        <right_flank>CGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAACAACATTGAAGAACAACATCGGGGAGAGAAGCAGGTGGCTTCTGTTTTGTAATTTCACACCTGTCGATGTTTTTTTTTTCAATTTGAACTTCTGCATTTGAATATGGGAAAGTGGGAGGAAGAGAGAAGGGCCCCTCTTGAGGGGGGCCGGAGTATACAAAAAGTTCCGGGGATATTTCGTGGGGAAAATCCTTGTAGTCGATTCCAGATCCACCGAATTATCTGAGACTTTCTGTGGCTTTTCCATTCATCTCGATTCTTCTTAGTCATCGGTTTCCAAACAACTTTCCTTTTTATCATTTTGATAAGAATGTTGTCCCCTATCCAGAATATATCCAATCATTTTTTGCCTTTTTTCCTTTTTAGGCAACTTCGCAAGTTCAAATTCCTCTCCCCTCTCATTAGTGCACCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAAT</canonical>
            <polymorphic>AGAACAACATTGAAGAACAACATCGGGGAGAGAAGCAGGTGGCTTCTGTTTTGTAATTTCACACCTGTCGATGTTTTTTTTTTCAATTTGAACTTCTGCATTTGAATATGGGAAAGTGGGAGGAAGAGAGAAGGGCCCCTCTTGAGGGGGGCCGGAGTATACAAAAAGTTCCGGGGATATTTCGTGGGGAAAATCCTTGTAGTCGATTCCAGATCCACCGAATTATCTGAGACTTTCTGTGGCTTTTCCATTCATCTCGATTCTTCTTAGTCATCGGTTTCCAAACAACTTTCCTTTTTATCATTTTGATAAGAATGTTGTCCCCTATCCAGAATATATCCAATCATTTTTTGCCTTTTTTCCTTTTTAGGCAACTTCGCAAGTTCAAATTCCTCTCCCCTCTCATTAGTGCACCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGSCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>428 392 108 72</canonical_bands>
                <polymorphic_bands>464 428 108</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>500 428 72</canonical_bands>
                <polymorphic_bands>572 428</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCTATCCAGAATATATCCAATC</pcr_primer_p1>
		<pcr_primer_p2>GAAACTTCTAAGACACCATGAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CCCTATCCAGAATATATCCAATCATTTTTTGCCTTTTTTCCTTTTTAGGCAACTTCGCAAGTTCAAATTCCTCTCCCCTCTCATTAGTGCACCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTC</canonical_amplicon>
		<polymorphic_amplicon>CCCTATCCAGAATATATCCAATCATTTTTTGCCTTTTTTCCTTTTTAGGCAACTTCGCAAGTTCAAATTCCTCTCCCCTCTCATTAGTGCACCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGSCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26089</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>102655</contig_pos>
        <strand>+</strand>
        <context>AGTCRGCGSC[A/G]TGTTGATAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGC</left_flank>
        <right_flank>TGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATG</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAACATTGAAGAACAACATCGGGGAGAGAAGCAGGTGGCTTCTGTTTTGTAATTTCACACCTGTCGATGTTTTTTTTTTCAATTTGAACTTCTGCATTTGAATATGGGAAAGTGGGAGGAAGAGAGAAGGGCCCCTCTTGAGGGGGGCCGGAGTATACAAAAAGTTCCGGGGATATTTCGTGGGGAAAATCCTTGTAGTCGATTCCAGATCCACCGAATTATCTGAGACTTTCTGTGGCTTTTCCATTCATCTCGATTCTTCTTAGTCATCGGTTTCCAAACAACTTTCCTTTTTATCATTTTGATAAGAATGTTGTCCCCTATCCAGAATATATCCAATCATTTTTTGCCTTTTTTCCTTTTTAGGCAACTTCGCAAGTTCAAATTCCTCTCCCCTCTCATTAGTGCACCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTT</canonical>
            <polymorphic>AACAACATTGAAGAACAACATCGGGGAGAGAAGCAGGTGGCTTCTGTTTTGTAATTTCACACCTGTCGATGTTTTTTTTTTCAATTTGAACTTCTGCATTTGAATATGGGAAAGTGGGAGGAAGAGAGAAGGGCCCCTCTTGAGGGGGGCCGGAGTATACAAAAAGTTCCGGGGATATTTCGTGGGGAAAATCCTTGTAGTCGATTCCAGATCCACCGAATTATCTGAGACTTTCTGTGGCTTTTCCATTCATCTCGATTCTTCTTAGTCATCGGTTTCCAAACAACTTTCCTTTTTATCATTTTGATAAGAATGTTGTCCCCTATCCAGAATATATCCAATCATTTTTTGCCTTTTTTCCTTTTTAGGCAACTTCGCAAGTTCAAATTCCTCTCCCCTCTCATTAGTGCACCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGCRTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>170 93 90 81 68 55 54 42 40 39 34 33 31 24 24 21 20 18 13 12 10 8 7 3 3 3 2 2</canonical_bands>
                <polymorphic_bands>170 93 90 81 72 68 55 42 40 39 34 33 31 24 24 21 20 13 12 10 8 7 3 3 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCTATCCAGAATATATCCAATC</pcr_primer_p1>
		<pcr_primer_p2>GAAACTTCTAAGACACCATGAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CCCTATCCAGAATATATCCAATCATTTTTTGCCTTTTTTCCTTTTTAGGCAACTTCGCAAGTTCAAATTCCTCTCCCCTCTCATTAGTGCACCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTC</canonical_amplicon>
		<polymorphic_amplicon>CCCTATCCAGAATATATCCAATCATTTTTTGCCTTTTTTCCTTTTTAGGCAACTTCGCAAGTTCAAATTCCTCTCCCCTCTCATTAGTGCACCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGCRTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26090</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>102686</contig_pos>
        <strand>+</strand>
        <context>TCCAGTTGAT[G/T]TCTCTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGAT</left_flank>
        <right_flank>TCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCG</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCAGGTGGCTTCTGTTTTGTAATTTCACACCTGTCGATGTTTTTTTTTTCAATTTGAACTTCTGCATTTGAATATGGGAAAGTGGGAGGAAGAGAGAAGGGCCCCTCTTGAGGGGGGCCGGAGTATACAAAAAGTTCCGGGGATATTTCGTGGGGAAAATCCTTGTAGTCGATTCCAGATCCACCGAATTATCTGAGACTTTCTGTGGCTTTTCCATTCATCTCGATTCTTCTTAGTCATCGGTTTCCAAACAACTTTCCTTTTTATCATTTTGATAAGAATGTTGTCCCCTATCCAGAATATATCCAATCATTTTTTGCCTTTTTTCCTTTTTAGGCAACTTCGCAAGTTCAAATTCCTCTCCCCTCTCATTAGTGCACCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATT</canonical>
            <polymorphic>AGCAGGTGGCTTCTGTTTTGTAATTTCACACCTGTCGATGTTTTTTTTTTCAATTTGAACTTCTGCATTTGAATATGGGAAAGTGGGAGGAAGAGAGAAGGGCCCCTCTTGAGGGGGGCCGGAGTATACAAAAAGTTCCGGGGATATTTCGTGGGGAAAATCCTTGTAGTCGATTCCAGATCCACCGAATTATCTGAGACTTTCTGTGGCTTTTCCATTCATCTCGATTCTTCTTAGTCATCGGTTTCCAAACAACTTTCCTTTTTATCATTTTGATAAGAATGTTGTCCCCTATCCAGAATATATCCAATCATTTTTTGCCTTTTTTCCTTTTTAGGCAACTTCGCAAGTTCAAATTCCTCTCCCCTCTCATTAGTGCACCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATKTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTGACGGAGAAGATAAGAGA</pcr_primer_p1>
		<pcr_primer_p2>AGATCTCACTTTCATTCATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>CTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCT</canonical_amplicon>
		<polymorphic_amplicon>CTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATKTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26091</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>102796</contig_pos>
        <strand></strand>
        <context>GCTAAAAAAT[A/G]GGAAARAARA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAAT</left_flank>
        <right_flank>GGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGGGGGCCGGAGTATACAAAAAGTTCCGGGGATATTTCGTGGGGAAAATCCTTGTAGTCGATTCCAGATCCACCGAATTATCTGAGACTTTCTGTGGCTTTTCCATTCATCTCGATTCTTCTTAGTCATCGGTTTCCAAACAACTTTCCTTTTTATCATTTTGATAAGAATGTTGTCCCCTATCCAGAATATATCCAATCATTTTTTGCCTTTTTTCCTTTTTAGGCAACTTCGCAAGTTCAAATTCCTCTCCCCTCTCATTAGTGCACCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGCCCATCAAAACCGTTCACTTGGAGCT</canonical>
            <polymorphic>GAGGGGGGCCGGAGTATACAAAAAGTTCCGGGGATATTTCGTGGGGAAAATCCTTGTAGTCGATTCCAGATCCACCGAATTATCTGAGACTTTCTGTGGCTTTTCCATTCATCTCGATTCTTCTTAGTCATCGGTTTCCAAACAACTTTCCTTTTTATCATTTTGATAAGAATGTTGTCCCCTATCCAGAATATATCCAATCATTTTTTGCCTTTTTTCCTTTTTAGGCAACTTCGCAAGTTCAAATTCCTCTCCCCTCTCATTAGTGCACCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATRGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGCCCATCAAAACCGTTCACTTGGAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTGACGGAGAAGATAAGAGA</pcr_primer_p1>
		<pcr_primer_p2>AGATCTCACTTTCATTCATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>CTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCT</canonical_amplicon>
		<polymorphic_amplicon>CTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATRGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26092</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>102802</contig_pos>
        <strand>+</strand>
        <context>AAATRGGAAA[A/G]AARAGGATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAA</left_flank>
        <right_flank>AATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCCGGAGTATACAAAAAGTTCCGGGGATATTTCGTGGGGAAAATCCTTGTAGTCGATTCCAGATCCACCGAATTATCTGAGACTTTCTGTGGCTTTTCCATTCATCTCGATTCTTCTTAGTCATCGGTTTCCAAACAACTTTCCTTTTTATCATTTTGATAAGAATGTTGTCCCCTATCCAGAATATATCCAATCATTTTTTGCCTTTTTTCCTTTTTAGGCAACTTCGCAAGTTCAAATTCCTCTCCCCTCTCATTAGTGCACCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGCCCATCAAAACCGTTCACTTGGAGCTCAATTA</canonical>
            <polymorphic>GGCCGGAGTATACAAAAAGTTCCGGGGATATTTCGTGGGGAAAATCCTTGTAGTCGATTCCAGATCCACCGAATTATCTGAGACTTTCTGTGGCTTTTCCATTCATCTCGATTCTTCTTAGTCATCGGTTTCCAAACAACTTTCCTTTTTATCATTTTGATAAGAATGTTGTCCCCTATCCAGAATATATCCAATCATTTTTTGCCTTTTTTCCTTTTTAGGCAACTTCGCAAGTTCAAATTCCTCTCCCCTCTCATTAGTGCACCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAARAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGCCCATCAAAACCGTTCACTTGGAGCTCAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGCTAGGGAAAGAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>GCTTTAGCGTAAGTTCATCATAA</pcr_primer_p2>
		<pcr_amplicon_size>519</pcr_amplicon_size>
		<canonical_amplicon>GTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGC</canonical_amplicon>
		<polymorphic_amplicon>GTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAARAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26093</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>102805</contig_pos>
        <strand>+</strand>
        <context>TRGGAAARAA[A/G]AGGATAAKCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAA</left_flank>
        <right_flank>AGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGAGTATACAAAAAGTTCCGGGGATATTTCGTGGGGAAAATCCTTGTAGTCGATTCCAGATCCACCGAATTATCTGAGACTTTCTGTGGCTTTTCCATTCATCTCGATTCTTCTTAGTCATCGGTTTCCAAACAACTTTCCTTTTTATCATTTTGATAAGAATGTTGTCCCCTATCCAGAATATATCCAATCATTTTTTGCCTTTTTTCCTTTTTAGGCAACTTCGCAAGTTCAAATTCCTCTCCCCTCTCATTAGTGCACCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGCCCATCAAAACCGTTCACTTGGAGCTCAATTATCT</canonical>
            <polymorphic>CGGAGTATACAAAAAGTTCCGGGGATATTTCGTGGGGAAAATCCTTGTAGTCGATTCCAGATCCACCGAATTATCTGAGACTTTCTGTGGCTTTTCCATTCATCTCGATTCTTCTTAGTCATCGGTTTCCAAACAACTTTCCTTTTTATCATTTTGATAAGAATGTTGTCCCCTATCCAGAATATATCCAATCATTTTTTGCCTTTTTTCCTTTTTAGGCAACTTCGCAAGTTCAAATTCCTCTCCCCTCTCATTAGTGCACCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAARAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGCCCATCAAAACCGTTCACTTGGAGCTCAATTATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCTAGGGAAAGAAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GCTTTAGCGTAAGTTCATCATAA</pcr_primer_p2>
		<pcr_amplicon_size>517</pcr_amplicon_size>
		<canonical_amplicon>GGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGC</canonical_amplicon>
		<polymorphic_amplicon>GGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAARAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26094</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>102813</contig_pos>
        <strand>+</strand>
        <context>AARAGGATAA[G/T]CCAGAATTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAA</left_flank>
        <right_flank>CCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAAAAAGTTCCGGGGATATTTCGTGGGGAAAATCCTTGTAGTCGATTCCAGATCCACCGAATTATCTGAGACTTTCTGTGGCTTTTCCATTCATCTCGATTCTTCTTAGTCATCGGTTTCCAAACAACTTTCCTTTTTATCATTTTGATAAGAATGTTGTCCCCTATCCAGAATATATCCAATCATTTTTTGCCTTTTTTCCTTTTTAGGCAACTTCGCAAGTTCAAATTCCTCTCCCCTCTCATTAGTGCACCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGCCCATCAAAACCGTTCACTTGGAGCTCAATTATCTCGATTTCT</canonical>
            <polymorphic>ACAAAAAGTTCCGGGGATATTTCGTGGGGAAAATCCTTGTAGTCGATTCCAGATCCACCGAATTATCTGAGACTTTCTGTGGCTTTTCCATTCATCTCGATTCTTCTTAGTCATCGGTTTCCAAACAACTTTCCTTTTTATCATTTTGATAAGAATGTTGTCCCCTATCCAGAATATATCCAATCATTTTTTGCCTTTTTTCCTTTTTAGGCAACTTCGCAAGTTCAAATTCCTCTCCCCTCTCATTAGTGCACCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAAKCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGCCCATCAAAACCGTTCACTTGGAGCTCAATTATCTCGATTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>332 152 139 100 73 49 47 43 35 21 9</canonical_bands>
                <polymorphic_bands>432 152 139 73 49 47 43 35 21 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCTAGGGAAAGAAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GCTTTAGCGTAAGTTCATCATAA</pcr_primer_p2>
		<pcr_amplicon_size>517</pcr_amplicon_size>
		<canonical_amplicon>GGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGC</canonical_amplicon>
		<polymorphic_amplicon>GGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAAKCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26095</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>102860</contig_pos>
        <strand>+</strand>
        <context>CTTATATATG[A/G]CTTGTTTcct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATG</left_flank>
        <right_flank>CTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAGATCCACCGAATTATCTGAGACTTTCTGTGGCTTTTCCATTCATCTCGATTCTTCTTAGTCATCGGTTTCCAAACAACTTTCCTTTTTATCATTTTGATAAGAATGTTGTCCCCTATCCAGAATATATCCAATCATTTTTTGCCTTTTTTCCTTTTTAGGCAACTTCGCAAGTTCAAATTCCTCTCCCCTCTCATTAGTGCACCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGCCCATCAAAACCGTTCACTTGGAGCTCAATTATCTCGATTTCTGTGAAAGATATCAAAGTTTTCTCAACTGATAAAATTTTTATCCTAAT</canonical>
            <polymorphic>TCCAGATCCACCGAATTATCTGAGACTTTCTGTGGCTTTTCCATTCATCTCGATTCTTCTTAGTCATCGGTTTCCAAACAACTTTCCTTTTTATCATTTTGATAAGAATGTTGTCCCCTATCCAGAATATATCCAATCATTTTTTGCCTTTTTTCCTTTTTAGGCAACTTCGCAAGTTCAAATTCCTCTCCCCTCTCATTAGTGCACCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGRCTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGCCCATCAAAACCGTTCACTTGGAGCTCAATTATCTCGATTTCTGTGAAAGATATCAAAGTTTTCTCAACTGATAAAATTTTTATCCTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCTAGGGAAAGAAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GCTTTAGCGTAAGTTCATCATAA</pcr_primer_p2>
		<pcr_amplicon_size>517</pcr_amplicon_size>
		<canonical_amplicon>GGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGC</canonical_amplicon>
		<polymorphic_amplicon>GGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGRCTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26096</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>102958</contig_pos>
        <strand></strand>
        <context>actgataaaa[C/A]tttgggcaca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAA</left_flank>
        <right_flank>TTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGATAAGAATGTTGTCCCCTATCCAGAATATATCCAATCATTTTTTGCCTTTTTTCCTTTTTAGGCAACTTCGCAAGTTCAAATTCCTCTCCCCTCTCATTAGTGCACCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGCCCATCAAAACCGTTCACTTGGAGCTCAATTATCTCGATTTCTGTGAAAGATATCAAAGTTTTCTCAACTGATAAAATTTTTATCCTAATTTCACTAATATTTTATTAGTCAACGGATTTTAAATATCTTTTACAGTAATTGAAATTGTTAGTGACATTATGAGAAATAATTTATCAATTGACAAATT</canonical>
            <polymorphic>TTGATAAGAATGTTGTCCCCTATCCAGAATATATCCAATCATTTTTTGCCTTTTTTCCTTTTTAGGCAACTTCGCAAGTTCAAATTCCTCTCCCCTCTCATTAGTGCACCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAAMTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGCCCATCAAAACCGTTCACTTGGAGCTCAATTATCTCGATTTCTGTGAAAGATATCAAAGTTTTCTCAACTGATAAAATTTTTATCCTAATTTCACTAATATTTTATTAGTCAACGGATTTTAAATATCTTTTACAGTAATTGAAATTGTTAGTGACATTATGAGAAATAATTTATCAATTGACAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATGAAATGAATGAAAGTGAGA</pcr_primer_p1>
		<pcr_primer_p2>GCTTTAGCGTAAGTTCATCATAA</pcr_primer_p2>
		<pcr_amplicon_size>447</pcr_amplicon_size>
		<canonical_amplicon>AATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGC</canonical_amplicon>
		<polymorphic_amplicon>AATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAAMTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26097</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>103010</contig_pos>
        <strand>+</strand>
        <context>tttgatatct[A/G]tgatagcaac</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCT</left_flank>
        <right_flank>TGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCCTTTTTAGGCAACTTCGCAAGTTCAAATTCCTCTCCCCTCTCATTAGTGCACCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGCCCATCAAAACCGTTCACTTGGAGCTCAATTATCTCGATTTCTGTGAAAGATATCAAAGTTTTCTCAACTGATAAAATTTTTATCCTAATTTCACTAATATTTTATTAGTCAACGGATTTTAAATATCTTTTACAGTAATTGAAATTGTTAGTGACATTATGAGAAATAATTTATCAATTGACAAATTTTTGATATCTTCAACAGGAATCGAGATAATTAAGCTCAAAATTACCGGTTTG</canonical>
            <polymorphic>TTTTCCTTTTTAGGCAACTTCGCAAGTTCAAATTCCTCTCCCCTCTCATTAGTGCACCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTRTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGCCCATCAAAACCGTTCACTTGGAGCTCAATTATCTCGATTTCTGTGAAAGATATCAAAGTTTTCTCAACTGATAAAATTTTTATCCTAATTTCACTAATATTTTATTAGTCAACGGATTTTAAATATCTTTTACAGTAATTGAAATTGTTAGTGACATTATGAGAAATAATTTATCAATTGACAAATTTTTGATATCTTCAACAGGAATCGAGATAATTAAGCTCAAAATTACCGGTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>499 289 212</canonical_bands>
                <polymorphic_bands>788 212</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATATGAAATGAATGAAAGTGAGA</pcr_primer_p1>
		<pcr_primer_p2>GCTTTAGCGTAAGTTCATCATAA</pcr_primer_p2>
		<pcr_amplicon_size>447</pcr_amplicon_size>
		<canonical_amplicon>AATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGC</canonical_amplicon>
		<polymorphic_amplicon>AATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTRTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26098</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>103046</contig_pos>
        <strand></strand>
        <context>caaaCTGCAG[C/T]RATTAGATGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAG</left_flank>
        <right_flank>AATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCCCCTCTCATTAGTGCACCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGCCCATCAAAACCGTTCACTTGGAGCTCAATTATCTCGATTTCTGTGAAAGATATCAAAGTTTTCTCAACTGATAAAATTTTTATCCTAATTTCACTAATATTTTATTAGTCAACGGATTTTAAATATCTTTTACAGTAATTGAAATTGTTAGTGACATTATGAGAAATAATTTATCAATTGACAAATTTTTGATATCTTCAACAGGAATCGAGATAATTAAGCTCAAAATTACCGGTTTGGACGGGCGTCAATTAGATGAAATACGGTATAAGGAA</canonical>
            <polymorphic>TCTCCCCTCTCATTAGTGCACCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGYAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGCCCATCAAAACCGTTCACTTGGAGCTCAATTATCTCGATTTCTGTGAAAGATATCAAAGTTTTCTCAACTGATAAAATTTTTATCCTAATTTCACTAATATTTTATTAGTCAACGGATTTTAAATATCTTTTACAGTAATTGAAATTGTTAGTGACATTATGAGAAATAATTTATCAATTGACAAATTTTTGATATCTTCAACAGGAATCGAGATAATTAAGCTCAAAATTACCGGTTTGGACGGGCGTCAATTAGATGAAATACGGTATAAGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>501 392 72 35</canonical_bands>
                <polymorphic_bands>893 72 35</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATATGAAATGAATGAAAGTGAGA</pcr_primer_p1>
		<pcr_primer_p2>GCTTTAGCGTAAGTTCATCATAA</pcr_primer_p2>
		<pcr_amplicon_size>447</pcr_amplicon_size>
		<canonical_amplicon>AATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGC</canonical_amplicon>
		<polymorphic_amplicon>AATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGYAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26099</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>103047</contig_pos>
        <strand></strand>
        <context>aaaCTGCAGY[A/G]ATTAGATGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGC</left_flank>
        <right_flank>ATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCCCTCTCATTAGTGCACCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGCCCATCAAAACCGTTCACTTGGAGCTCAATTATCTCGATTTCTGTGAAAGATATCAAAGTTTTCTCAACTGATAAAATTTTTATCCTAATTTCACTAATATTTTATTAGTCAACGGATTTTAAATATCTTTTACAGTAATTGAAATTGTTAGTGACATTATGAGAAATAATTTATCAATTGACAAATTTTTGATATCTTCAACAGGAATCGAGATAATTAAGCTCAAAATTACCGGTTTGGACGGGCGTCAATTAGATGAAATACGGTATAAGGAAT</canonical>
            <polymorphic>CTCCCCTCTCATTAGTGCACCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCRATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGCCCATCAAAACCGTTCACTTGGAGCTCAATTATCTCGATTTCTGTGAAAGATATCAAAGTTTTCTCAACTGATAAAATTTTTATCCTAATTTCACTAATATTTTATTAGTCAACGGATTTTAAATATCTTTTACAGTAATTGAAATTGTTAGTGACATTATGAGAAATAATTTATCAATTGACAAATTTTTGATATCTTCAACAGGAATCGAGATAATTAAGCTCAAAATTACCGGTTTGGACGGGCGTCAATTAGATGAAATACGGTATAAGGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>226 90 89 72 56 50 48 39 38 31 30 27 25 24 23 20 20 15 12 12 9 8 8 8 8 6 6</canonical_bands>
                <polymorphic_bands>226 90 89 72 56 50 48 39 38 35 31 30 27 25 24 23 20 12 12 9 8 8 8 8 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATATGAAATGAATGAAAGTGAGA</pcr_primer_p1>
		<pcr_primer_p2>GCTTTAGCGTAAGTTCATCATAA</pcr_primer_p2>
		<pcr_amplicon_size>447</pcr_amplicon_size>
		<canonical_amplicon>AATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGC</canonical_amplicon>
		<polymorphic_amplicon>AATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCRATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26100</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>103066</contig_pos>
        <strand>+</strand>
        <context>ACGATGAATT[C/T]ACGATAAAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATT</left_flank>
        <right_flank>ACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTT</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGCCCATCAAAACCGTTCACTTGGAGCTCAATTATCTCGATTTCTGTGAAAGATATCAAAGTTTTCTCAACTGATAAAATTTTTATCCTAATTTCACTAATATTTTATTAGTCAACGGATTTTAAATATCTTTTACAGTAATTGAAATTGTTAGTGACATTATGAGAAATAATTTATCAATTGACAAATTTTTGATATCTTCAACAGGAATCGAGATAATTAAGCTCAAAATTACCGGTTTGGACGGGCGTCAATTAGATGAAATACGGTATAAGGAATTTCATAACAGTATGAAATT</canonical>
            <polymorphic>CCAATGACTTGGCCGCCGACACCATCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTYACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGCCCATCAAAACCGTTCACTTGGAGCTCAATTATCTCGATTTCTGTGAAAGATATCAAAGTTTTCTCAACTGATAAAATTTTTATCCTAATTTCACTAATATTTTATTAGTCAACGGATTTTAAATATCTTTTACAGTAATTGAAATTGTTAGTGACATTATGAGAAATAATTTATCAATTGACAAATTTTTGATATCTTCAACAGGAATCGAGATAATTAAGCTCAAAATTACCGGTTTGGACGGGCGTCAATTAGATGAAATACGGTATAAGGAATTTCATAACAGTATGAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>251 195 179 109 90 72 65 22 17</canonical_bands>
                <polymorphic_bands>251 195 179 137 109 90 22 17</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>166 142 93 90 81 60 54 48 42 40 33 29 24 21 18 13 12 10 8 7 3 3 3</canonical_bands>
                <polymorphic_bands>166 142 105 90 81 60 54 48 42 40 33 29 24 21 18 13 10 8 7 3 3 3</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>248 176 152 139 100 86 43 35 21</canonical_bands>
                <polymorphic_bands>248 195 176 139 100 86 35 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATATGAAATGAATGAAAGTGAGA</pcr_primer_p1>
		<pcr_primer_p2>GCTTTAGCGTAAGTTCATCATAA</pcr_primer_p2>
		<pcr_amplicon_size>447</pcr_amplicon_size>
		<canonical_amplicon>AATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGC</canonical_amplicon>
		<polymorphic_amplicon>AATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTYACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26101</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>103090</contig_pos>
        <strand></strand>
        <context>CCGAAaccgt[C/A]aacttcgagc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGT</left_flank>
        <right_flank>AACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGCCCATCAAAACCGTTCACTTGGAGCTCAATTATCTCGATTTCTGTGAAAGATATCAAAGTTTTCTCAACTGATAAAATTTTTATCCTAATTTCACTAATATTTTATTAGTCAACGGATTTTAAATATCTTTTACAGTAATTGAAATTGTTAGTGACATTATGAGAAATAATTTATCAATTGACAAATTTTTGATATCTTCAACAGGAATCGAGATAATTAAGCTCAAAATTACCGGTTTGGACGGGCGTCAATTAGATGAAATACGGTATAAGGAATTTCATAACAGTATGAAATTTTAGAAAAAAAAATGAAAACTGGG</canonical>
            <polymorphic>TCCAGCACCACCACTGATTCCTCCAGCGCATCCCTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTMAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGCCCATCAAAACCGTTCACTTGGAGCTCAATTATCTCGATTTCTGTGAAAGATATCAAAGTTTTCTCAACTGATAAAATTTTTATCCTAATTTCACTAATATTTTATTAGTCAACGGATTTTAAATATCTTTTACAGTAATTGAAATTGTTAGTGACATTATGAGAAATAATTTATCAATTGACAAATTTTTGATATCTTCAACAGGAATCGAGATAATTAAGCTCAAAATTACCGGTTTGGACGGGCGTCAATTAGATGAAATACGGTATAAGGAATTTCATAACAGTATGAAATTTTAGAAAAAAAAATGAAAACTGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>305 291 209 144 51</canonical_bands>
                <polymorphic_bands>435 305 209 51</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATATGAAATGAATGAAAGTGAGA</pcr_primer_p1>
		<pcr_primer_p2>GCTTTAGCGTAAGTTCATCATAA</pcr_primer_p2>
		<pcr_amplicon_size>447</pcr_amplicon_size>
		<canonical_amplicon>AATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGC</canonical_amplicon>
		<polymorphic_amplicon>AATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTMAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26102</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>103123</contig_pos>
        <strand></strand>
        <context>atttctgtga[A/T]agacatcaag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGA</left_flank>
        <right_flank>AGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGCCCATCAAAACCGTTCACTTGGAGCTCAATTATCTCGATTTCTGTGAAAGATATCAAAGTTTTCTCAACTGATAAAATTTTTATCCTAATTTCACTAATATTTTATTAGTCAACGGATTTTAAATATCTTTTACAGTAATTGAAATTGTTAGTGACATTATGAGAAATAATTTATCAATTGACAAATTTTTGATATCTTCAACAGGAATCGAGATAATTAAGCTCAAAATTACCGGTTTGGACGGGCGTCAATTAGATGAAATACGGTATAAGGAATTTCATAACAGTATGAAATTTTAGAAAAAAAAATGAAAACTGGGAGAAATAGAAAAAGGGGAATAAAATTAATAAAA</canonical>
            <polymorphic>CTTTGACGGAGAAGATAAGAGAGTCAGCGGCGTGTTGATAGAGGATGAGGTGTCCAGTTGATTTCTCTTTTTGGGTTTCATGGTGTCTTAGAAGTTTCCGACATGGGTGGTCGCGGTTGGTGCCGGGTGGTGGCTAGGGAAAGAAGAAAAAATTGAAATTGAGCTAAAAAATAGGAAAGAATAGGATAATCCAGAATTTGAAATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAWAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGCCCATCAAAACCGTTCACTTGGAGCTCAATTATCTCGATTTCTGTGAAAGATATCAAAGTTTTCTCAACTGATAAAATTTTTATCCTAATTTCACTAATATTTTATTAGTCAACGGATTTTAAATATCTTTTACAGTAATTGAAATTGTTAGTGACATTATGAGAAATAATTTATCAATTGACAAATTTTTGATATCTTCAACAGGAATCGAGATAATTAAGCTCAAAATTACCGGTTTGGACGGGCGTCAATTAGATGAAATACGGTATAAGGAATTTCATAACAGTATGAAATTTTAGAAAAAAAAATGAAAACTGGGAGAAATAGAAAAAGGGGAATAAAATTAATAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATGAAATGAATGAAAGTGAGA</pcr_primer_p1>
		<pcr_primer_p2>GCTTTAGCGTAAGTTCATCATAA</pcr_primer_p2>
		<pcr_amplicon_size>447</pcr_amplicon_size>
		<canonical_amplicon>AATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAAAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGC</canonical_amplicon>
		<polymorphic_amplicon>AATATGAAATGAATGAAAGTGAGATCTTATATATGACTTGTTTCCTCTAATAAAATCCTACCCGAAACGTCAACTTTGAGCTCAATTATCTCGATTACTGTGTAAGATATCAATATTCTGTCAACTGATAAAACTTTGGGCACATTATCACAAATGTTTTACCAGTTTACAAAATTTTGATATCTCTGATAGCAACCGAGATAATTGAGGCCAAACTGCAGCAATTAGATGACGATGAATTCACGATAAAACTCACCGAAACCGTCAACTTCGAGCTGAGTTATCTCGATTTCTGTGAWAGACATCAAGAATTTGGCAATTGATAAAATTTTGGTAATATCATGAAAAATAATTTATCAATTGACAAAGTTTTGATATGTCTCTAACAAACCGAAATAATTGAGCTCAAAGCGGAACAATTAGATTATGATGAACTTACGCTAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26103</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>210510</contig_pos>
        <strand>+</strand>
        <context>CATGGAAGAA[A/G]YTYACAGCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAA</left_flank>
        <right_flank>CTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGATGAGGTGATCGTTCCACTGGTATTCGTGATTTTTGAAGTGCGATTCACCACGTTGAATCTTGAACGCCAGGATTTCCAGAACGATTACAGTGAGTTGTTTTATTTACAGTAGTTTTTTTTCTGTTGGTTTTTGGCAATTGTGAGCGTATTCTAGAGTCTAGAGCTTGACTTGACCGTGTCCGAGCTATTTGAAAATGTTGCTCCAGACTCTTGAGAAGAGTTCCAAACCTTGGCCAAAAAACAACTAAAAAATACATTTTTGTGGTTCTTTTCCCATCTCTCCAACTAACTGTATTTTCAGATCTCTTTAAGTTTTTTGCGGACAACGAAGTTGGCATATTTACACAAGGAATGCTGAAAAAAAACCTTCAATAATATTGGATCAACGCCAGTCACTTGCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCACCAAACGTCACCATACCAGATTTTTCCTGAAAAATGAGGAGGAAGGATTGGCAGAACAAGGATTTAATGTCCGGCCGGGAACCTTGGTGGAAGATACGGTGACCACTAAAAACTA</canonical>
            <polymorphic>AGGATGAGGTGATCGTTCCACTGGTATTCGTGATTTTTGAAGTGCGATTCACCACGTTGAATCTTGAACGCCAGGATTTCCAGAACGATTACAGTGAGTTGTTTTATTTACAGTAGTTTTTTTTCTGTTGGTTTTTGGCAATTGTGAGCGTATTCTAGAGTCTAGAGCTTGACTTGACCGTGTCCGAGCTATTTGAAAATGTTGCTCCAGACTCTTGAGAAGAGTTCCAAACCTTGGCCAAAAAACAACTAAAAAATACATTTTTGTGGTTCTTTTCCCATCTCTCCAACTAACTGTATTTTCAGATCTCTTTAAGTTTTTTGCGGACAACGAAGTTGGCATATTTACACAAGGAATGCTGAAAAAAAACCTTCAATAATATTGGATCAACGCCAGTCACTTGCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAARCTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCACCAAACGTCACCATACCAGATTTTTCCTGAAAAATGAGGAGGAAGGATTGGCAGAACAAGGATTTAATGTCCGGCCGGGAACCTTGGTGGAAGATACGGTGACCACTAAAAACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAAGTTCACTAGCCAAATC</pcr_primer_p1>
		<pcr_primer_p2>GTGCAGTCCAGATCAATATTTC</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>GCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCAC</canonical_amplicon>
		<polymorphic_amplicon>GCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAARCTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26104</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>210511</contig_pos>
        <strand>+</strand>
        <context>ATGGAAGAAR[C/T]TYACAGCTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAA</left_flank>
        <right_flank>TTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATGAGGTGATCGTTCCACTGGTATTCGTGATTTTTGAAGTGCGATTCACCACGTTGAATCTTGAACGCCAGGATTTCCAGAACGATTACAGTGAGTTGTTTTATTTACAGTAGTTTTTTTTCTGTTGGTTTTTGGCAATTGTGAGCGTATTCTAGAGTCTAGAGCTTGACTTGACCGTGTCCGAGCTATTTGAAAATGTTGCTCCAGACTCTTGAGAAGAGTTCCAAACCTTGGCCAAAAAACAACTAAAAAATACATTTTTGTGGTTCTTTTCCCATCTCTCCAACTAACTGTATTTTCAGATCTCTTTAAGTTTTTTGCGGACAACGAAGTTGGCATATTTACACAAGGAATGCTGAAAAAAAACCTTCAATAATATTGGATCAACGCCAGTCACTTGCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCACCAAACGTCACCATACCAGATTTTTCCTGAAAAATGAGGAGGAAGGATTGGCAGAACAAGGATTTAATGTCCGGCCGGGAACCTTGGTGGAAGATACGGTGACCACTAAAAACTAC</canonical>
            <polymorphic>GGATGAGGTGATCGTTCCACTGGTATTCGTGATTTTTGAAGTGCGATTCACCACGTTGAATCTTGAACGCCAGGATTTCCAGAACGATTACAGTGAGTTGTTTTATTTACAGTAGTTTTTTTTCTGTTGGTTTTTGGCAATTGTGAGCGTATTCTAGAGTCTAGAGCTTGACTTGACCGTGTCCGAGCTATTTGAAAATGTTGCTCCAGACTCTTGAGAAGAGTTCCAAACCTTGGCCAAAAAACAACTAAAAAATACATTTTTGTGGTTCTTTTCCCATCTCTCCAACTAACTGTATTTTCAGATCTCTTTAAGTTTTTTGCGGACAACGAAGTTGGCATATTTACACAAGGAATGCTGAAAAAAAACCTTCAATAATATTGGATCAACGCCAGTCACTTGCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAAYTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCACCAAACGTCACCATACCAGATTTTTCCTGAAAAATGAGGAGGAAGGATTGGCAGAACAAGGATTTAATGTCCGGCCGGGAACCTTGGTGGAAGATACGGTGACCACTAAAAACTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAAGTTCACTAGCCAAATC</pcr_primer_p1>
		<pcr_primer_p2>GTGCAGTCCAGATCAATATTTC</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>GCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCAC</canonical_amplicon>
		<polymorphic_amplicon>GCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAAYTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26105</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>210513</contig_pos>
        <strand>+</strand>
        <context>GGAAGAARYT[C/T]ACAGCTGAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACT</left_flank>
        <right_flank>ACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAGGTGATCGTTCCACTGGTATTCGTGATTTTTGAAGTGCGATTCACCACGTTGAATCTTGAACGCCAGGATTTCCAGAACGATTACAGTGAGTTGTTTTATTTACAGTAGTTTTTTTTCTGTTGGTTTTTGGCAATTGTGAGCGTATTCTAGAGTCTAGAGCTTGACTTGACCGTGTCCGAGCTATTTGAAAATGTTGCTCCAGACTCTTGAGAAGAGTTCCAAACCTTGGCCAAAAAACAACTAAAAAATACATTTTTGTGGTTCTTTTCCCATCTCTCCAACTAACTGTATTTTCAGATCTCTTTAAGTTTTTTGCGGACAACGAAGTTGGCATATTTACACAAGGAATGCTGAAAAAAAACCTTCAATAATATTGGATCAACGCCAGTCACTTGCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCACCAAACGTCACCATACCAGATTTTTCCTGAAAAATGAGGAGGAAGGATTGGCAGAACAAGGATTTAATGTCCGGCCGGGAACCTTGGTGGAAGATACGGTGACCACTAAAAACTACTA</canonical>
            <polymorphic>ATGAGGTGATCGTTCCACTGGTATTCGTGATTTTTGAAGTGCGATTCACCACGTTGAATCTTGAACGCCAGGATTTCCAGAACGATTACAGTGAGTTGTTTTATTTACAGTAGTTTTTTTTCTGTTGGTTTTTGGCAATTGTGAGCGTATTCTAGAGTCTAGAGCTTGACTTGACCGTGTCCGAGCTATTTGAAAATGTTGCTCCAGACTCTTGAGAAGAGTTCCAAACCTTGGCCAAAAAACAACTAAAAAATACATTTTTGTGGTTCTTTTCCCATCTCTCCAACTAACTGTATTTTCAGATCTCTTTAAGTTTTTTGCGGACAACGAAGTTGGCATATTTACACAAGGAATGCTGAAAAAAAACCTTCAATAATATTGGATCAACGCCAGTCACTTGCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTYACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCACCAAACGTCACCATACCAGATTTTTCCTGAAAAATGAGGAGGAAGGATTGGCAGAACAAGGATTTAATGTCCGGCCGGGAACCTTGGTGGAAGATACGGTGACCACTAAAAACTACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAAGTTCACTAGCCAAATC</pcr_primer_p1>
		<pcr_primer_p2>GTGCAGTCCAGATCAATATTTC</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>GCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCAC</canonical_amplicon>
		<polymorphic_amplicon>GCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTYACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26106</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>210538</contig_pos>
        <strand>+</strand>
        <context>TCTTCTTCTC[G/T]GCGTCGACGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTC</left_flank>
        <right_flank>GCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCAT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTGATTTTTGAAGTGCGATTCACCACGTTGAATCTTGAACGCCAGGATTTCCAGAACGATTACAGTGAGTTGTTTTATTTACAGTAGTTTTTTTTCTGTTGGTTTTTGGCAATTGTGAGCGTATTCTAGAGTCTAGAGCTTGACTTGACCGTGTCCGAGCTATTTGAAAATGTTGCTCCAGACTCTTGAGAAGAGTTCCAAACCTTGGCCAAAAAACAACTAAAAAATACATTTTTGTGGTTCTTTTCCCATCTCTCCAACTAACTGTATTTTCAGATCTCTTTAAGTTTTTTGCGGACAACGAAGTTGGCATATTTACACAAGGAATGCTGAAAAAAAACCTTCAATAATATTGGATCAACGCCAGTCACTTGCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCACCAAACGTCACCATACCAGATTTTTCCTGAAAAATGAGGAGGAAGGATTGGCAGAACAAGGATTTAATGTCCGGCCGGGAACCTTGGTGGAAGATACGGTGACCACTAAAAACTACTATGATTTCTTCCTAACCACTCAAGTT</canonical>
            <polymorphic>CGTGATTTTTGAAGTGCGATTCACCACGTTGAATCTTGAACGCCAGGATTTCCAGAACGATTACAGTGAGTTGTTTTATTTACAGTAGTTTTTTTTCTGTTGGTTTTTGGCAATTGTGAGCGTATTCTAGAGTCTAGAGCTTGACTTGACCGTGTCCGAGCTATTTGAAAATGTTGCTCCAGACTCTTGAGAAGAGTTCCAAACCTTGGCCAAAAAACAACTAAAAAATACATTTTTGTGGTTCTTTTCCCATCTCTCCAACTAACTGTATTTTCAGATCTCTTTAAGTTTTTTGCGGACAACGAAGTTGGCATATTTACACAAGGAATGCTGAAAAAAAACCTTCAATAATATTGGATCAACGCCAGTCACTTGCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCKGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCACCAAACGTCACCATACCAGATTTTTCCTGAAAAATGAGGAGGAAGGATTGGCAGAACAAGGATTTAATGTCCGGCCGGGAACCTTGGTGGAAGATACGGTGACCACTAAAAACTACTATGATTTCTTCCTAACCACTCAAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>501 493 6</canonical_bands>
                <polymorphic_bands>507 493</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAAGTTCACTAGCCAAATC</pcr_primer_p1>
		<pcr_primer_p2>GTGCAGTCCAGATCAATATTTC</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>GCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCAC</canonical_amplicon>
		<polymorphic_amplicon>GCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCKGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26107</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>210558</contig_pos>
        <strand>+</strand>
        <context>TCTCGCATCC[A/G]TCGACKAGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCC</left_flank>
        <right_flank>TCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACCACGTTGAATCTTGAACGCCAGGATTTCCAGAACGATTACAGTGAGTTGTTTTATTTACAGTAGTTTTTTTTCTGTTGGTTTTTGGCAATTGTGAGCGTATTCTAGAGTCTAGAGCTTGACTTGACCGTGTCCGAGCTATTTGAAAATGTTGCTCCAGACTCTTGAGAAGAGTTCCAAACCTTGGCCAAAAAACAACTAAAAAATACATTTTTGTGGTTCTTTTCCCATCTCTCCAACTAACTGTATTTTCAGATCTCTTTAAGTTTTTTGCGGACAACGAAGTTGGCATATTTACACAAGGAATGCTGAAAAAAAACCTTCAATAATATTGGATCAACGCCAGTCACTTGCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCACCAAACGTCACCATACCAGATTTTTCCTGAAAAATGAGGAGGAAGGATTGGCAGAACAAGGATTTAATGTCCGGCCGGGAACCTTGGTGGAAGATACGGTGACCACTAAAAACTACTATGATTTCTTCCTAACCACTCAAGTTGGACAAATCGGACTCGCTCG</canonical>
            <polymorphic>TCACCACGTTGAATCTTGAACGCCAGGATTTCCAGAACGATTACAGTGAGTTGTTTTATTTACAGTAGTTTTTTTTCTGTTGGTTTTTGGCAATTGTGAGCGTATTCTAGAGTCTAGAGCTTGACTTGACCGTGTCCGAGCTATTTGAAAATGTTGCTCCAGACTCTTGAGAAGAGTTCCAAACCTTGGCCAAAAAACAACTAAAAAATACATTTTTGTGGTTCTTTTCCCATCTCTCCAACTAACTGTATTTTCAGATCTCTTTAAGTTTTTTGCGGACAACGAAGTTGGCATATTTACACAAGGAATGCTGAAAAAAAACCTTCAATAATATTGGATCAACGCCAGTCACTTGCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCRTCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCACCAAACGTCACCATACCAGATTTTTCCTGAAAAATGAGGAGGAAGGATTGGCAGAACAAGGATTTAATGTCCGGCCGGGAACCTTGGTGGAAGATACGGTGACCACTAAAAACTACTATGATTTCTTCCTAACCACTCAAGTTGGACAAATCGGACTCGCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAAGTTCACTAGCCAAATC</pcr_primer_p1>
		<pcr_primer_p2>GTGCAGTCCAGATCAATATTTC</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>GCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCAC</canonical_amplicon>
		<polymorphic_amplicon>GCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCRTCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26108</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>210564</contig_pos>
        <strand>+</strand>
        <context>ATCCRTCGAC[G/T]AGGGATTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGAC</left_flank>
        <right_flank>AGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTGAATCTTGAACGCCAGGATTTCCAGAACGATTACAGTGAGTTGTTTTATTTACAGTAGTTTTTTTTCTGTTGGTTTTTGGCAATTGTGAGCGTATTCTAGAGTCTAGAGCTTGACTTGACCGTGTCCGAGCTATTTGAAAATGTTGCTCCAGACTCTTGAGAAGAGTTCCAAACCTTGGCCAAAAAACAACTAAAAAATACATTTTTGTGGTTCTTTTCCCATCTCTCCAACTAACTGTATTTTCAGATCTCTTTAAGTTTTTTGCGGACAACGAAGTTGGCATATTTACACAAGGAATGCTGAAAAAAAACCTTCAATAATATTGGATCAACGCCAGTCACTTGCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCACCAAACGTCACCATACCAGATTTTTCCTGAAAAATGAGGAGGAAGGATTGGCAGAACAAGGATTTAATGTCCGGCCGGGAACCTTGGTGGAAGATACGGTGACCACTAAAAACTACTATGATTTCTTCCTAACCACTCAAGTTGGACAAATCGGACTCGCTCGACTAAC</canonical>
            <polymorphic>CGTTGAATCTTGAACGCCAGGATTTCCAGAACGATTACAGTGAGTTGTTTTATTTACAGTAGTTTTTTTTCTGTTGGTTTTTGGCAATTGTGAGCGTATTCTAGAGTCTAGAGCTTGACTTGACCGTGTCCGAGCTATTTGAAAATGTTGCTCCAGACTCTTGAGAAGAGTTCCAAACCTTGGCCAAAAAACAACTAAAAAATACATTTTTGTGGTTCTTTTCCCATCTCTCCAACTAACTGTATTTTCAGATCTCTTTAAGTTTTTTGCGGACAACGAAGTTGGCATATTTACACAAGGAATGCTGAAAAAAAACCTTCAATAATATTGGATCAACGCCAGTCACTTGCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACKAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCACCAAACGTCACCATACCAGATTTTTCCTGAAAAATGAGGAGGAAGGATTGGCAGAACAAGGATTTAATGTCCGGCCGGGAACCTTGGTGGAAGATACGGTGACCACTAAAAACTACTATGATTTCTTCCTAACCACTCAAGTTGGACAAATCGGACTCGCTCGACTAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 250 141 101 7</canonical_bands>
                <polymorphic_bands>642 250 101 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAAGTTCACTAGCCAAATC</pcr_primer_p1>
		<pcr_primer_p2>GTGCAGTCCAGATCAATATTTC</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>GCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCAC</canonical_amplicon>
		<polymorphic_amplicon>GCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACKAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26109</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>210575</contig_pos>
        <strand>+</strand>
        <context>AGGGATTTGA[A/T]GGGAGAGGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGA</left_flank>
        <right_flank>GGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACGCCAGGATTTCCAGAACGATTACAGTGAGTTGTTTTATTTACAGTAGTTTTTTTTCTGTTGGTTTTTGGCAATTGTGAGCGTATTCTAGAGTCTAGAGCTTGACTTGACCGTGTCCGAGCTATTTGAAAATGTTGCTCCAGACTCTTGAGAAGAGTTCCAAACCTTGGCCAAAAAACAACTAAAAAATACATTTTTGTGGTTCTTTTCCCATCTCTCCAACTAACTGTATTTTCAGATCTCTTTAAGTTTTTTGCGGACAACGAAGTTGGCATATTTACACAAGGAATGCTGAAAAAAAACCTTCAATAATATTGGATCAACGCCAGTCACTTGCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCACCAAACGTCACCATACCAGATTTTTCCTGAAAAATGAGGAGGAAGGATTGGCAGAACAAGGATTTAATGTCCGGCCGGGAACCTTGGTGGAAGATACGGTGACCACTAAAAACTACTATGATTTCTTCCTAACCACTCAAGTTGGACAAATCGGACTCGCTCGACTAACCCACTACTACG</canonical>
            <polymorphic>GAACGCCAGGATTTCCAGAACGATTACAGTGAGTTGTTTTATTTACAGTAGTTTTTTTTCTGTTGGTTTTTGGCAATTGTGAGCGTATTCTAGAGTCTAGAGCTTGACTTGACCGTGTCCGAGCTATTTGAAAATGTTGCTCCAGACTCTTGAGAAGAGTTCCAAACCTTGGCCAAAAAACAACTAAAAAATACATTTTTGTGGTTCTTTTCCCATCTCTCCAACTAACTGTATTTTCAGATCTCTTTAAGTTTTTTGCGGACAACGAAGTTGGCATATTTACACAAGGAATGCTGAAAAAAAACCTTCAATAATATTGGATCAACGCCAGTCACTTGCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAWGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCACCAAACGTCACCATACCAGATTTTTCCTGAAAAATGAGGAGGAAGGATTGGCAGAACAAGGATTTAATGTCCGGCCGGGAACCTTGGTGGAAGATACGGTGACCACTAAAAACTACTATGATTTCTTCCTAACCACTCAAGTTGGACAAATCGGACTCGCTCGACTAACCCACTACTACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAAGTTCACTAGCCAAATC</pcr_primer_p1>
		<pcr_primer_p2>GTGCAGTCCAGATCAATATTTC</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>GCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCAC</canonical_amplicon>
		<polymorphic_amplicon>GCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAWGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26110</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>210597</contig_pos>
        <strand>+</strand>
        <context>ATGTCAAACG[A/C]TTGTCGATTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACG</left_flank>
        <right_flank>TTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTACAGTGAGTTGTTTTATTTACAGTAGTTTTTTTTCTGTTGGTTTTTGGCAATTGTGAGCGTATTCTAGAGTCTAGAGCTTGACTTGACCGTGTCCGAGCTATTTGAAAATGTTGCTCCAGACTCTTGAGAAGAGTTCCAAACCTTGGCCAAAAAACAACTAAAAAATACATTTTTGTGGTTCTTTTCCCATCTCTCCAACTAACTGTATTTTCAGATCTCTTTAAGTTTTTTGCGGACAACGAAGTTGGCATATTTACACAAGGAATGCTGAAAAAAAACCTTCAATAATATTGGATCAACGCCAGTCACTTGCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCACCAAACGTCACCATACCAGATTTTTCCTGAAAAATGAGGAGGAAGGATTGGCAGAACAAGGATTTAATGTCCGGCCGGGAACCTTGGTGGAAGATACGGTGACCACTAAAAACTACTATGATTTCTTCCTAACCACTCAAGTTGGACAAATCGGACTCGCTCGACTAACCCACTACTACGTGCTACATAACGATTGGAAGGT</canonical>
            <polymorphic>ATTACAGTGAGTTGTTTTATTTACAGTAGTTTTTTTTCTGTTGGTTTTTGGCAATTGTGAGCGTATTCTAGAGTCTAGAGCTTGACTTGACCGTGTCCGAGCTATTTGAAAATGTTGCTCCAGACTCTTGAGAAGAGTTCCAAACCTTGGCCAAAAAACAACTAAAAAATACATTTTTGTGGTTCTTTTCCCATCTCTCCAACTAACTGTATTTTCAGATCTCTTTAAGTTTTTTGCGGACAACGAAGTTGGCATATTTACACAAGGAATGCTGAAAAAAAACCTTCAATAATATTGGATCAACGCCAGTCACTTGCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGMTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCACCAAACGTCACCATACCAGATTTTTCCTGAAAAATGAGGAGGAAGGATTGGCAGAACAAGGATTTAATGTCCGGCCGGGAACCTTGGTGGAAGATACGGTGACCACTAAAAACTACTATGATTTCTTCCTAACCACTCAAGTTGGACAAATCGGACTCGCTCGACTAACCCACTACTACGTGCTACATAACGATTGGAAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTGAACCGACTCTTCTTCT</pcr_primer_p1>
		<pcr_primer_p2>CGTACAGTGTTCTTTGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>GCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACG</canonical_amplicon>
		<polymorphic_amplicon>GCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGMTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26111</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>210608</contig_pos>
        <strand>+</strand>
        <context>TTGTCGATTG[A/C]CACCGTTGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTG</left_flank>
        <right_flank>CACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTTTATTTACAGTAGTTTTTTTTCTGTTGGTTTTTGGCAATTGTGAGCGTATTCTAGAGTCTAGAGCTTGACTTGACCGTGTCCGAGCTATTTGAAAATGTTGCTCCAGACTCTTGAGAAGAGTTCCAAACCTTGGCCAAAAAACAACTAAAAAATACATTTTTGTGGTTCTTTTCCCATCTCTCCAACTAACTGTATTTTCAGATCTCTTTAAGTTTTTTGCGGACAACGAAGTTGGCATATTTACACAAGGAATGCTGAAAAAAAACCTTCAATAATATTGGATCAACGCCAGTCACTTGCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCACCAAACGTCACCATACCAGATTTTTCCTGAAAAATGAGGAGGAAGGATTGGCAGAACAAGGATTTAATGTCCGGCCGGGAACCTTGGTGGAAGATACGGTGACCACTAAAAACTACTATGATTTCTTCCTAACCACTCAAGTTGGACAAATCGGACTCGCTCGACTAACCCACTACTACGTGCTACATAACGATTGGAAGGTGCCGGCAACCT</canonical>
            <polymorphic>TTGTTTTATTTACAGTAGTTTTTTTTCTGTTGGTTTTTGGCAATTGTGAGCGTATTCTAGAGTCTAGAGCTTGACTTGACCGTGTCCGAGCTATTTGAAAATGTTGCTCCAGACTCTTGAGAAGAGTTCCAAACCTTGGCCAAAAAACAACTAAAAAATACATTTTTGTGGTTCTTTTCCCATCTCTCCAACTAACTGTATTTTCAGATCTCTTTAAGTTTTTTGCGGACAACGAAGTTGGCATATTTACACAAGGAATGCTGAAAAAAAACCTTCAATAATATTGGATCAACGCCAGTCACTTGCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGMCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCACCAAACGTCACCATACCAGATTTTTCCTGAAAAATGAGGAGGAAGGATTGGCAGAACAAGGATTTAATGTCCGGCCGGGAACCTTGGTGGAAGATACGGTGACCACTAAAAACTACTATGATTTCTTCCTAACCACTCAAGTTGGACAAATCGGACTCGCTCGACTAACCCACTACTACGTGCTACATAACGATTGGAAGGTGCCGGCAACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTGAACCGACTCTTCTTCT</pcr_primer_p1>
		<pcr_primer_p2>CGTACAGTGTTCTTTGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>GCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACG</canonical_amplicon>
		<polymorphic_amplicon>GCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGMCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26112</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>210674</contig_pos>
        <strand>+</strand>
        <context>ATTCAAGATG[C/T]TGGCGAGGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATG</left_flank>
        <right_flank>TGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCTTGACTTGACCGTGTCCGAGCTATTTGAAAATGTTGCTCCAGACTCTTGAGAAGAGTTCCAAACCTTGGCCAAAAAACAACTAAAAAATACATTTTTGTGGTTCTTTTCCCATCTCTCCAACTAACTGTATTTTCAGATCTCTTTAAGTTTTTTGCGGACAACGAAGTTGGCATATTTACACAAGGAATGCTGAAAAAAAACCTTCAATAATATTGGATCAACGCCAGTCACTTGCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCACCAAACGTCACCATACCAGATTTTTCCTGAAAAATGAGGAGGAAGGATTGGCAGAACAAGGATTTAATGTCCGGCCGGGAACCTTGGTGGAAGATACGGTGACCACTAAAAACTACTATGATTTCTTCCTAACCACTCAAGTTGGACAAATCGGACTCGCTCGACTAACCCACTACTACGTGCTACATAACGATTGGAAGGTGCCGGCAACCTTCTGGCCGACTGTGACCCATGCTCTCACCTACTTGTTCTGCCGATCAACCAGTACTGTGAATTTTC</canonical>
            <polymorphic>GAGCTTGACTTGACCGTGTCCGAGCTATTTGAAAATGTTGCTCCAGACTCTTGAGAAGAGTTCCAAACCTTGGCCAAAAAACAACTAAAAAATACATTTTTGTGGTTCTTTTCCCATCTCTCCAACTAACTGTATTTTCAGATCTCTTTAAGTTTTTTGCGGACAACGAAGTTGGCATATTTACACAAGGAATGCTGAAAAAAAACCTTCAATAATATTGGATCAACGCCAGTCACTTGCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGYTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCACCAAACGTCACCATACCAGATTTTTCCTGAAAAATGAGGAGGAAGGATTGGCAGAACAAGGATTTAATGTCCGGCCGGGAACCTTGGTGGAAGATACGGTGACCACTAAAAACTACTATGATTTCTTCCTAACCACTCAAGTTGGACAAATCGGACTCGCTCGACTAACCCACTACTACGTGCTACATAACGATTGGAAGGTGCCGGCAACCTTCTGGCCGACTGTGACCCATGCTCTCACCTACTTGTTCTGCCGATCAACCAGTACTGTGAATTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGTCGGAAATATTGATCTG</pcr_primer_p1>
		<pcr_primer_p2>ACTCCTCTTCTCCTCGTACAGT</pcr_primer_p2>
		<pcr_amplicon_size>219</pcr_amplicon_size>
		<canonical_amplicon>GTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGT</canonical_amplicon>
		<polymorphic_amplicon>GTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGYTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26113</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>210695</contig_pos>
        <strand>+</strand>
        <context>AGAATCGTTC[C/G]ATTCKAGAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTC</left_flank>
        <right_flank>ATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGCTATTTGAAAATGTTGCTCCAGACTCTTGAGAAGAGTTCCAAACCTTGGCCAAAAAACAACTAAAAAATACATTTTTGTGGTTCTTTTCCCATCTCTCCAACTAACTGTATTTTCAGATCTCTTTAAGTTTTTTGCGGACAACGAAGTTGGCATATTTACACAAGGAATGCTGAAAAAAAACCTTCAATAATATTGGATCAACGCCAGTCACTTGCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCACCAAACGTCACCATACCAGATTTTTCCTGAAAAATGAGGAGGAAGGATTGGCAGAACAAGGATTTAATGTCCGGCCGGGAACCTTGGTGGAAGATACGGTGACCACTAAAAACTACTATGATTTCTTCCTAACCACTCAAGTTGGACAAATCGGACTCGCTCGACTAACCCACTACTACGTGCTACATAACGATTGGAAGGTGCCGGCAACCTTCTGGCCGACTGTGACCCATGCTCTCACCTACTTGTTCTGCCGATCAACCAGTACTGTGAATTTTCCAGCTCCTGTCCTCTATGCTC</canonical>
            <polymorphic>GAGCTATTTGAAAATGTTGCTCCAGACTCTTGAGAAGAGTTCCAAACCTTGGCCAAAAAACAACTAAAAAATACATTTTTGTGGTTCTTTTCCCATCTCTCCAACTAACTGTATTTTCAGATCTCTTTAAGTTTTTTGCGGACAACGAAGTTGGCATATTTACACAAGGAATGCTGAAAAAAAACCTTCAATAATATTGGATCAACGCCAGTCACTTGCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCSATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCACCAAACGTCACCATACCAGATTTTTCCTGAAAAATGAGGAGGAAGGATTGGCAGAACAAGGATTTAATGTCCGGCCGGGAACCTTGGTGGAAGATACGGTGACCACTAAAAACTACTATGATTTCTTCCTAACCACTCAAGTTGGACAAATCGGACTCGCTCGACTAACCCACTACTACGTGCTACATAACGATTGGAAGGTGCCGGCAACCTTCTGGCCGACTGTGACCCATGCTCTCACCTACTTGTTCTGCCGATCAACCAGTACTGTGAATTTTCCAGCTCCTGTCCTCTATGCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>348 206 152 138 57 42 35 17 5</canonical_bands>
                <polymorphic_bands>348 206 152 138 57 42 40 17</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>330 305 146 138 25 24 23 9</canonical_bands>
                <polymorphic_bands>330 305 146 138 33 25 23</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>476 468 24 23 9</canonical_bands>
                <polymorphic_bands>476 468 33 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGTCGGAAATATTGATCTG</pcr_primer_p1>
		<pcr_primer_p2>ACTCCTCTTCTCCTCGTACAGT</pcr_primer_p2>
		<pcr_amplicon_size>219</pcr_amplicon_size>
		<canonical_amplicon>GTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGT</canonical_amplicon>
		<polymorphic_amplicon>GTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCSATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26114</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>210700</contig_pos>
        <strand>+</strand>
        <context>CGTTCSATTC[G/T]AGAACGAMAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTC</left_flank>
        <right_flank>AGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTGAAAATGTTGCTCCAGACTCTTGAGAAGAGTTCCAAACCTTGGCCAAAAAACAACTAAAAAATACATTTTTGTGGTTCTTTTCCCATCTCTCCAACTAACTGTATTTTCAGATCTCTTTAAGTTTTTTGCGGACAACGAAGTTGGCATATTTACACAAGGAATGCTGAAAAAAAACCTTCAATAATATTGGATCAACGCCAGTCACTTGCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCACCAAACGTCACCATACCAGATTTTTCCTGAAAAATGAGGAGGAAGGATTGGCAGAACAAGGATTTAATGTCCGGCCGGGAACCTTGGTGGAAGATACGGTGACCACTAAAAACTACTATGATTTCTTCCTAACCACTCAAGTTGGACAAATCGGACTCGCTCGACTAACCCACTACTACGTGCTACATAACGATTGGAAGGTGCCGGCAACCTTCTGGCCGACTGTGACCCATGCTCTCACCTACTTGTTCTGCCGATCAACCAGTACTGTGAATTTTCCAGCTCCTGTCCTCTATGCTCATCTC</canonical>
            <polymorphic>ATTTGAAAATGTTGCTCCAGACTCTTGAGAAGAGTTCCAAACCTTGGCCAAAAAACAACTAAAAAATACATTTTTGTGGTTCTTTTCCCATCTCTCCAACTAACTGTATTTTCAGATCTCTTTAAGTTTTTTGCGGACAACGAAGTTGGCATATTTACACAAGGAATGCTGAAAAAAAACCTTCAATAATATTGGATCAACGCCAGTCACTTGCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCKAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCACCAAACGTCACCATACCAGATTTTTCCTGAAAAATGAGGAGGAAGGATTGGCAGAACAAGGATTTAATGTCCGGCCGGGAACCTTGGTGGAAGATACGGTGACCACTAAAAACTACTATGATTTCTTCCTAACCACTCAAGTTGGACAAATCGGACTCGCTCGACTAACCCACTACTACGTGCTACATAACGATTGGAAGGTGCCGGCAACCTTCTGGCCGACTGTGACCCATGCTCTCACCTACTTGTTCTGCCGATCAACCAGTACTGTGAATTTTCCAGCTCCTGTCCTCTATGCTCATCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>343 206 152 143 57 42 35 17 5</canonical_bands>
                <polymorphic_bands>343 206 157 143 57 42 35 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGTCGGAAATATTGATCTG</pcr_primer_p1>
		<pcr_primer_p2>ACTCCTCTTCTCCTCGTACAGT</pcr_primer_p2>
		<pcr_amplicon_size>219</pcr_amplicon_size>
		<canonical_amplicon>GTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGT</canonical_amplicon>
		<polymorphic_amplicon>GTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCKAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26115</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>210708</contig_pos>
        <strand>+</strand>
        <context>TCKAGAACGA[A/C]ATTCTGGAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGA</left_flank>
        <right_flank>ATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTTGCTCCAGACTCTTGAGAAGAGTTCCAAACCTTGGCCAAAAAACAACTAAAAAATACATTTTTGTGGTTCTTTTCCCATCTCTCCAACTAACTGTATTTTCAGATCTCTTTAAGTTTTTTGCGGACAACGAAGTTGGCATATTTACACAAGGAATGCTGAAAAAAAACCTTCAATAATATTGGATCAACGCCAGTCACTTGCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCACCAAACGTCACCATACCAGATTTTTCCTGAAAAATGAGGAGGAAGGATTGGCAGAACAAGGATTTAATGTCCGGCCGGGAACCTTGGTGGAAGATACGGTGACCACTAAAAACTACTATGATTTCTTCCTAACCACTCAAGTTGGACAAATCGGACTCGCTCGACTAACCCACTACTACGTGCTACATAACGATTGGAAGGTGCCGGCAACCTTCTGGCCGACTGTGACCCATGCTCTCACCTACTTGTTCTGCCGATCAACCAGTACTGTGAATTTTCCAGCTCCTGTCCTCTATGCTCATCTCGCGGCGAA</canonical>
            <polymorphic>ATGTTGCTCCAGACTCTTGAGAAGAGTTCCAAACCTTGGCCAAAAAACAACTAAAAAATACATTTTTGTGGTTCTTTTCCCATCTCTCCAACTAACTGTATTTTCAGATCTCTTTAAGTTTTTTGCGGACAACGAAGTTGGCATATTTACACAAGGAATGCTGAAAAAAAACCTTCAATAATATTGGATCAACGCCAGTCACTTGCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAMATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCACCAAACGTCACCATACCAGATTTTTCCTGAAAAATGAGGAGGAAGGATTGGCAGAACAAGGATTTAATGTCCGGCCGGGAACCTTGGTGGAAGATACGGTGACCACTAAAAACTACTATGATTTCTTCCTAACCACTCAAGTTGGACAAATCGGACTCGCTCGACTAACCCACTACTACGTGCTACATAACGATTGGAAGGTGCCGGCAACCTTCTGGCCGACTGTGACCCATGCTCTCACCTACTTGTTCTGCCGATCAACCAGTACTGTGAATTTTCCAGCTCCTGTCCTCTATGCTCATCTCGCGGCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>499 460 41</canonical_bands>
                <polymorphic_bands>959 41</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>499 431 41 19 10</canonical_bands>
                <polymorphic_bands>518 431 41 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCGTCGAAGATTCAAGATG</pcr_primer_p1>
		<pcr_primer_p2>TGACAACAATGTAGGTTAGTGTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCA</canonical_amplicon>
		<polymorphic_amplicon>ATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAMATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26116</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>210719</contig_pos>
        <strand>+</strand>
        <context>ATTCTGGAAC[C/G]AATCTGCAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAAC</left_flank>
        <right_flank>AATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACTCTTGAGAAGAGTTCCAAACCTTGGCCAAAAAACAACTAAAAAATACATTTTTGTGGTTCTTTTCCCATCTCTCCAACTAACTGTATTTTCAGATCTCTTTAAGTTTTTTGCGGACAACGAAGTTGGCATATTTACACAAGGAATGCTGAAAAAAAACCTTCAATAATATTGGATCAACGCCAGTCACTTGCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCACCAAACGTCACCATACCAGATTTTTCCTGAAAAATGAGGAGGAAGGATTGGCAGAACAAGGATTTAATGTCCGGCCGGGAACCTTGGTGGAAGATACGGTGACCACTAAAAACTACTATGATTTCTTCCTAACCACTCAAGTTGGACAAATCGGACTCGCTCGACTAACCCACTACTACGTGCTACATAACGATTGGAAGGTGCCGGCAACCTTCTGGCCGACTGTGACCCATGCTCTCACCTACTTGTTCTGCCGATCAACCAGTACTGTGAATTTTCCAGCTCCTGTCCTCTATGCTCATCTCGCGGCGAAGAAAGCCAAAG</canonical>
            <polymorphic>GACTCTTGAGAAGAGTTCCAAACCTTGGCCAAAAAACAACTAAAAAATACATTTTTGTGGTTCTTTTCCCATCTCTCCAACTAACTGTATTTTCAGATCTCTTTAAGTTTTTTGCGGACAACGAAGTTGGCATATTTACACAAGGAATGCTGAAAAAAAACCTTCAATAATATTGGATCAACGCCAGTCACTTGCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACSAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCACCAAACGTCACCATACCAGATTTTTCCTGAAAAATGAGGAGGAAGGATTGGCAGAACAAGGATTTAATGTCCGGCCGGGAACCTTGGTGGAAGATACGGTGACCACTAAAAACTACTATGATTTCTTCCTAACCACTCAAGTTGGACAAATCGGACTCGCTCGACTAACCCACTACTACGTGCTACATAACGATTGGAAGGTGCCGGCAACCTTCTGGCCGACTGTGACCCATGCTCTCACCTACTTGTTCTGCCGATCAACCAGTACTGTGAATTTTCCAGCTCCTGTCCTCTATGCTCATCTCGCGGCGAAGAAAGCCAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>330 305 170 138 24 23 9 1</canonical_bands>
                <polymorphic_bands>354 305 170 138 23 9 1</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 444 24 23 9</canonical_bands>
                <polymorphic_bands>524 444 23 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCGTCGAAGATTCAAGATG</pcr_primer_p1>
		<pcr_primer_p2>TGACAACAATGTAGGTTAGTGTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCA</canonical_amplicon>
		<polymorphic_amplicon>ATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACSAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26117</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>210783</contig_pos>
        <strand>+</strand>
        <context>ATAGAGACGG[C/T]YTTTCGGAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGG</left_flank>
        <right_flank>CTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCCCATCTCTCCAACTAACTGTATTTTCAGATCTCTTTAAGTTTTTTGCGGACAACGAAGTTGGCATATTTACACAAGGAATGCTGAAAAAAAACCTTCAATAATATTGGATCAACGCCAGTCACTTGCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCACCAAACGTCACCATACCAGATTTTTCCTGAAAAATGAGGAGGAAGGATTGGCAGAACAAGGATTTAATGTCCGGCCGGGAACCTTGGTGGAAGATACGGTGACCACTAAAAACTACTATGATTTCTTCCTAACCACTCAAGTTGGACAAATCGGACTCGCTCGACTAACCCACTACTACGTGCTACATAACGATTGGAAGGTGCCGGCAACCTTCTGGCCGACTGTGACCCATGCTCTCACCTACTTGTTCTGCCGATCAACCAGTACTGTGAATTTTCCAGCTCCTGTCCTCTATGCTCATCTCGCGGCGAAGAAAGCCAAAGAAACGATGGATGGAGCGTTATATGCCAATGCGTGAGTTGGAAAATTTTTGAATGGCAAGATTAT</canonical>
            <polymorphic>TTTCCCATCTCTCCAACTAACTGTATTTTCAGATCTCTTTAAGTTTTTTGCGGACAACGAAGTTGGCATATTTACACAAGGAATGCTGAAAAAAAACCTTCAATAATATTGGATCAACGCCAGTCACTTGCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGYCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCACCAAACGTCACCATACCAGATTTTTCCTGAAAAATGAGGAGGAAGGATTGGCAGAACAAGGATTTAATGTCCGGCCGGGAACCTTGGTGGAAGATACGGTGACCACTAAAAACTACTATGATTTCTTCCTAACCACTCAAGTTGGACAAATCGGACTCGCTCGACTAACCCACTACTACGTGCTACATAACGATTGGAAGGTGCCGGCAACCTTCTGGCCGACTGTGACCCATGCTCTCACCTACTTGTTCTGCCGATCAACCAGTACTGTGAATTTTCCAGCTCCTGTCCTCTATGCTCATCTCGCGGCGAAGAAAGCCAAAGAAACGATGGATGGAGCGTTATATGCCAATGCGTGAGTTGGAAAATTTTTGAATGGCAAGATTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>307 181 169 126 119 45 31 22</canonical_bands>
                <polymorphic_bands>307 200 181 126 119 45 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCGTCGAAGATTCAAGATG</pcr_primer_p1>
		<pcr_primer_p2>TGACAACAATGTAGGTTAGTGTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCA</canonical_amplicon>
		<polymorphic_amplicon>ATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGYCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26118</snp_id>
        <super_contig>c002100200.Contig3</super_contig>
        <contig_pos>210784</contig_pos>
        <strand>+</strand>
        <context>TAGAGACGGY[C/T]TTTCGGAGGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGT</left_flank>
        <right_flank>TTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCCATCTCTCCAACTAACTGTATTTTCAGATCTCTTTAAGTTTTTTGCGGACAACGAAGTTGGCATATTTACACAAGGAATGCTGAAAAAAAACCTTCAATAATATTGGATCAACGCCAGTCACTTGCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCACCAAACGTCACCATACCAGATTTTTCCTGAAAAATGAGGAGGAAGGATTGGCAGAACAAGGATTTAATGTCCGGCCGGGAACCTTGGTGGAAGATACGGTGACCACTAAAAACTACTATGATTTCTTCCTAACCACTCAAGTTGGACAAATCGGACTCGCTCGACTAACCCACTACTACGTGCTACATAACGATTGGAAGGTGCCGGCAACCTTCTGGCCGACTGTGACCCATGCTCTCACCTACTTGTTCTGCCGATCAACCAGTACTGTGAATTTTCCAGCTCCTGTCCTCTATGCTCATCTCGCGGCGAAGAAAGCCAAAGAAACGATGGATGGAGCGTTATATGCCAATGCGTGAGTTGGAAAATTTTTGAATGGCAAGATTATA</canonical>
            <polymorphic>TTCCCATCTCTCCAACTAACTGTATTTTCAGATCTCTTTAAGTTTTTTGCGGACAACGAAGTTGGCATATTTACACAAGGAATGCTGAAAAAAAACCTTCAATAATATTGGATCAACGCCAGTCACTTGCAAGTTCACTAGCCAAATCGTGGAAAAGATATTGGGGAAAGTGGGCACAACCCATCGTCGTCTTGAGAGAAATGGAGACCACAAGTCATGGAAGAAACTTACAGCTGAACCGACTCTTCTTCTCGGCGTCGACGTCTCGCATCCATCGACTAGGGATTTGAAGGGAGAGGATCATGTCAAACGCTTGTCGATTGCCACCGTTGTCGGAAATATTGATCTGGACTGCACCGAATATCGCGCATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTYTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCACCAAACGTCACCATACCAGATTTTTCCTGAAAAATGAGGAGGAAGGATTGGCAGAACAAGGATTTAATGTCCGGCCGGGAACCTTGGTGGAAGATACGGTGACCACTAAAAACTACTATGATTTCTTCCTAACCACTCAAGTTGGACAAATCGGACTCGCTCGACTAACCCACTACTACGTGCTACATAACGATTGGAAGGTGCCGGCAACCTTCTGGCCGACTGTGACCCATGCTCTCACCTACTTGTTCTGCCGATCAACCAGTACTGTGAATTTTCCAGCTCCTGTCCTCTATGCTCATCTCGCGGCGAAGAAAGCCAAAGAAACGATGGATGGAGCGTTATATGCCAATGCGTGAGTTGGAAAATTTTTGAATGGCAAGATTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGTCGAAGATTCAAGATG</pcr_primer_p1>
		<pcr_primer_p2>TGACAACAATGTAGGTTAGTGTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTCTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCA</canonical_amplicon>
		<polymorphic_amplicon>ATCGTCGAAGATTCAAGATGTTGGCGAGGAGAGAATCGTTCGATTCGAGAACGAAATTCTGGAACGAATCTGCAATTTTGTGCAATTCACCGGCAAGCGTCCGGCCCACATTGTCATCTATAGAGACGGTYTTTCGGAGGGAGATTTCCAAAGAACACTGTACGAGGAGAAGAGGAGTGTGGAAACGGCGTGTCGTTCGATTGCTGCAGACTTCAACCCCACACTAACCTACATTGTTGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26119</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>8485</contig_pos>
        <strand>+</strand>
        <context>GTGTTATGAA[A/C]AAAATGTGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGAATGAGCCGATGTTGAACATTTTGATCTCTTCTAATTGTGTTATGAA</left_flank>
        <right_flank>AAAATGTGTTTATTTAATGTTCCAAATAATTTTGAATTTCAAAAAATTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCTCTCCAAGCCTAGAAAAAGTGCAAGCATCCGACGATGAGACGACCTACTCTCTCCAACAACGAGTACATGATCTGGAACACCTGCTCCAGAAGAAGGAACAACAACTCTACGAAAAGAATATGGAACTTGTCAAGGGCCAGAAGCTGATGAACTCTCGTCGACAAATCCAAAAGGAAAGATTTCAAAAAAGAATGACCATGAGGGATTGTACTTCTCCCAAACCCACATCGGATTTCGACTCAATTAACACCACCGAGGCATTACTGAAAATGGCCAATCGATTGGAGCAGGCAGAGGAGATAATCAACACTCTTGAGAGCACGCTGACAGGCAATTCCCTGTGGATCTGTAACCACTTTACGTCAGAGGAGATCCGGAAATTGCCACTGGAGAGAATGGAATCCCTTTCGAAGATCGCGAGTAAGGCTTTGAAGATTGTCAGGAAAGAATGAGCCGATGTTGAACATTTTGATCTCTTCTAATTGTGTTATGAACAAAATGTGTTTATTTAATGTTCCAAATAATTTTGAATTTCAAAAAATTTAATAAACTCGAATAGTCTACTGTTCTAAAGCGAGCGACACAATTCTAAAAAAGTCTTTATTATTTTCTGTAAAAATGACGAGCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAAAGTTCTATATTTGACAAAATTAGAGCTGTTCTGATCTTTGATAATTAGAATTTTTGGAATTTTCGTTTCCTGAGCTCTGATTTCTTGAATTTTTAAAGTTTCAAGTTTTTAGATTTTTTAGAGTTTTCGGCATTTATGGACCTCTTGGAATTTTGAATTTTCGAATTACCTAATTTTTAAAAATTCTTCTCGATTTTTGAATTGATTTTCAAAATTTCTGGAATTCTATCGAGTTTTATTTTTGTTTAGCATACTCTTAAATTTTCAGACAAATCAAAAAATTCTAGAAAACTTTGCTTTTTACAGTTTCCCTGTTCTTTT</canonical>
            <polymorphic>TTCCTCTCCAAGCCTAGAAAAAGTGCAAGCATCCGACGATGAGACGACCTACTCTCTCCAACAACGAGTACATGATCTGGAACACCTGCTCCAGAAGAAGGAACAACAACTCTACGAAAAGAATATGGAACTTGTCAAGGGCCAGAAGCTGATGAACTCTCGTCGACAAATCCAAAAGGAAAGATTTCAAAAAAGAATGACCATGAGGGATTGTACTTCTCCCAAACCCACATCGGATTTCGACTCAATTAACACCACCGAGGCATTACTGAAAATGGCCAATCGATTGGAGCAGGCAGAGGAGATAATCAACACTCTTGAGAGCACGCTGACAGGCAATTCCCTGTGGATCTGTAACCACTTTACGTCAGAGGAGATCCGGAAATTGCCACTGGAGAGAATGGAATCCCTTTCGAAGATCGCGAGTAAGGCTTTGAAGATTGTCAGGAAAGAATGAGCCGATGTTGAACATTTTGATCTCTTCTAATTGTGTTATGAAMAAAATGTGTTTATTTAATGTTCCAAATAATTTTGAATTTCAAAAAATTTAATAAACTCGAATAGTCTACTGTTCTAAAGCGAGCGACACAATTCTAAAAAAGTCTTTATTATTTTCTGTAAAAATGACGAGCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAAAGTTCTATATTTGACAAAATTAGAGCTGTTCTGATCTTTGATAATTAGAATTTTTGGAATTTTCGTTTCCTGAGCTCTGATTTCTTGAATTTTTAAAGTTTCAAGTTTTTAGATTTTTTAGAGTTTTCGGCATTTATGGACCTCTTGGAATTTTGAATTTTCGAATTACCTAATTTTTAAAAATTCTTCTCGATTTTTGAATTGATTTTCAAAATTTCTGGAATTCTATCGAGTTTTATTTTTGTTTAGCATACTCTTAAATTTTCAGACAAATCAAAAAATTCTAGAAAACTTTGCTTTTTACAGTTTCCCTGTTCTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTAAGGCTTTGAAGATTGTC</pcr_primer_p1>
		<pcr_primer_p2>AAATTCTGGAACACTTTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GAGTAAGGCTTTGAAGATTGTCAGGAAAGAATGAGCCGATGTTGAACATTTTGATCTCTTCTAATTGTGTTATGAACAAAATGTGTTTATTTAATGTTCCAAATAATTTTGAATTTCAAAAAATTTAATAAACTCGAATAGTCTACTGTTCTAAAGCGAGCGACACAATTCTAAAAAAGTCTTTATTATTTTCTGTAAAAATGACGAGCTATGAAGACCTCAAAAAGTGTTCCAGAATTT</canonical_amplicon>
		<polymorphic_amplicon>GAGTAAGGCTTTGAAGATTGTCAGGAAAGAATGAGCCGATGTTGAACATTTTGATCTCTTCTAATTGTGTTATGAAMAAAATGTGTTTATTTAATGTTCCAAATAATTTTGAATTTCAAAAAATTTAATAAACTCGAATAGTCTACTGTTCTAAAGCGAGCGACACAATTCTAAAAAAGTCTTTATTATTTTCTGTAAAAATGACGAGCTATGAAGACCTCAAAAAGTGTTCCAGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26120</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>8582</contig_pos>
        <strand>+</strand>
        <context>CACAATTCTA[A/C]AAAAGTCTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTAATAAACTCGAATAGTCTACTGTTCTAAAGCGAGCGACACAATTCTA</left_flank>
        <right_flank>AAAAGTCTTTATTATTTTCTGTAAAAATGACGAGCTATGAAGACCTCAAA</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGAACAACAACTCTACGAAAAGAATATGGAACTTGTCAAGGGCCAGAAGCTGATGAACTCTCGTCGACAAATCCAAAAGGAAAGATTTCAAAAAAGAATGACCATGAGGGATTGTACTTCTCCCAAACCCACATCGGATTTCGACTCAATTAACACCACCGAGGCATTACTGAAAATGGCCAATCGATTGGAGCAGGCAGAGGAGATAATCAACACTCTTGAGAGCACGCTGACAGGCAATTCCCTGTGGATCTGTAACCACTTTACGTCAGAGGAGATCCGGAAATTGCCACTGGAGAGAATGGAATCCCTTTCGAAGATCGCGAGTAAGGCTTTGAAGATTGTCAGGAAAGAATGAGCCGATGTTGAACATTTTGATCTCTTCTAATTGTGTTATGAACAAAATGTGTTTATTTAATGTTCCAAATAATTTTGAATTTCAAAAAATTTAATAAACTCGAATAGTCTACTGTTCTAAAGCGAGCGACACAATTCTAAAAAAGTCTTTATTATTTTCTGTAAAAATGACGAGCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAAAGTTCTATATTTGACAAAATTAGAGCTGTTCTGATCTTTGATAATTAGAATTTTTGGAATTTTCGTTTCCTGAGCTCTGATTTCTTGAATTTTTAAAGTTTCAAGTTTTTAGATTTTTTAGAGTTTTCGGCATTTATGGACCTCTTGGAATTTTGAATTTTCGAATTACCTAATTTTTAAAAATTCTTCTCGATTTTTGAATTGATTTTCAAAATTTCTGGAATTCTATCGAGTTTTATTTTTGTTTAGCATACTCTTAAATTTTCAGACAAATCAAAAAATTCTAGAAAACTTTGCTTTTTACAGTTTCCCTGTTCTTTTGATCACAATTTTTCTCTTCTTATCAGTACAAAAATATTGTATCGAGCCCAAATTAAAGCCATAAAAATGCTTCTTTCTCTTCAAAAATTGTGTTTAA</canonical>
            <polymorphic>AAGGAACAACAACTCTACGAAAAGAATATGGAACTTGTCAAGGGCCAGAAGCTGATGAACTCTCGTCGACAAATCCAAAAGGAAAGATTTCAAAAAAGAATGACCATGAGGGATTGTACTTCTCCCAAACCCACATCGGATTTCGACTCAATTAACACCACCGAGGCATTACTGAAAATGGCCAATCGATTGGAGCAGGCAGAGGAGATAATCAACACTCTTGAGAGCACGCTGACAGGCAATTCCCTGTGGATCTGTAACCACTTTACGTCAGAGGAGATCCGGAAATTGCCACTGGAGAGAATGGAATCCCTTTCGAAGATCGCGAGTAAGGCTTTGAAGATTGTCAGGAAAGAATGAGCCGATGTTGAACATTTTGATCTCTTCTAATTGTGTTATGAACAAAATGTGTTTATTTAATGTTCCAAATAATTTTGAATTTCAAAAAATTTAATAAACTCGAATAGTCTACTGTTCTAAAGCGAGCGACACAATTCTAMAAAAGTCTTTATTATTTTCTGTAAAAATGACGAGCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAAAGTTCTATATTTGACAAAATTAGAGCTGTTCTGATCTTTGATAATTAGAATTTTTGGAATTTTCGTTTCCTGAGCTCTGATTTCTTGAATTTTTAAAGTTTCAAGTTTTTAGATTTTTTAGAGTTTTCGGCATTTATGGACCTCTTGGAATTTTGAATTTTCGAATTACCTAATTTTTAAAAATTCTTCTCGATTTTTGAATTGATTTTCAAAATTTCTGGAATTCTATCGAGTTTTATTTTTGTTTAGCATACTCTTAAATTTTCAGACAAATCAAAAAATTCTAGAAAACTTTGCTTTTTACAGTTTCCCTGTTCTTTTGATCACAATTTTTCTCTTCTTATCAGTACAAAAATATTGTATCGAGCCCAAATTAAAGCCATAAAAATGCTTCTTTCTCTTCAAAAATTGTGTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTTGATCTCTTCTAATTGTGT</pcr_primer_p1>
		<pcr_primer_p2>GATCAGAACAGCTCTAATTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CATTTTGATCTCTTCTAATTGTGTTATGAACAAAATGTGTTTATTTAATGTTCCAAATAATTTTGAATTTCAAAAAATTTAATAAACTCGAATAGTCTACTGTTCTAAAGCGAGCGACACAATTCTAAAAAAGTCTTTATTATTTTCTGTAAAAATGACGAGCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAAAGTTCTATATTTGACAAAATTAGAGCTGTTCTGATC</canonical_amplicon>
		<polymorphic_amplicon>CATTTTGATCTCTTCTAATTGTGTTATGAACAAAATGTGTTTATTTAATGTTCCAAATAATTTTGAATTTCAAAAAATTTAATAAACTCGAATAGTCTACTGTTCTAAAGCGAGCGACACAATTCTAMAAAAGTCTTTATTATTTTCTGTAAAAATGACGAGCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAAAGTTCTATATTTGACAAAATTAGAGCTGTTCTGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26121</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>8614</contig_pos>
        <strand>+</strand>
        <context>TAAAAATGAC[A/G]AGCTATGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCGAGCGACACAATTCTAAAAAAGTCTTTATTATTTTCTGTAAAAATGAC</left_flank>
        <right_flank>AGCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTGTCAAGGGCCAGAAGCTGATGAACTCTCGTCGACAAATCCAAAAGGAAAGATTTCAAAAAAGAATGACCATGAGGGATTGTACTTCTCCCAAACCCACATCGGATTTCGACTCAATTAACACCACCGAGGCATTACTGAAAATGGCCAATCGATTGGAGCAGGCAGAGGAGATAATCAACACTCTTGAGAGCACGCTGACAGGCAATTCCCTGTGGATCTGTAACCACTTTACGTCAGAGGAGATCCGGAAATTGCCACTGGAGAGAATGGAATCCCTTTCGAAGATCGCGAGTAAGGCTTTGAAGATTGTCAGGAAAGAATGAGCCGATGTTGAACATTTTGATCTCTTCTAATTGTGTTATGAACAAAATGTGTTTATTTAATGTTCCAAATAATTTTGAATTTCAAAAAATTTAATAAACTCGAATAGTCTACTGTTCTAAAGCGAGCGACACAATTCTAAAAAAGTCTTTATTATTTTCTGTAAAAATGACGAGCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAAAGTTCTATATTTGACAAAATTAGAGCTGTTCTGATCTTTGATAATTAGAATTTTTGGAATTTTCGTTTCCTGAGCTCTGATTTCTTGAATTTTTAAAGTTTCAAGTTTTTAGATTTTTTAGAGTTTTCGGCATTTATGGACCTCTTGGAATTTTGAATTTTCGAATTACCTAATTTTTAAAAATTCTTCTCGATTTTTGAATTGATTTTCAAAATTTCTGGAATTCTATCGAGTTTTATTTTTGTTTAGCATACTCTTAAATTTTCAGACAAATCAAAAAATTCTAGAAAACTTTGCTTTTTACAGTTTCCCTGTTCTTTTGATCACAATTTTTCTCTTCTTATCAGTACAAAAATATTGTATCGAGCCCAAATTAAAGCCATAAAAATGCTTCTTTCTCTTCAAAAATTGTGTTTAAATTTTCTGTTTCCCATTTCATAATGAGCATTA</canonical>
            <polymorphic>ACTTGTCAAGGGCCAGAAGCTGATGAACTCTCGTCGACAAATCCAAAAGGAAAGATTTCAAAAAAGAATGACCATGAGGGATTGTACTTCTCCCAAACCCACATCGGATTTCGACTCAATTAACACCACCGAGGCATTACTGAAAATGGCCAATCGATTGGAGCAGGCAGAGGAGATAATCAACACTCTTGAGAGCACGCTGACAGGCAATTCCCTGTGGATCTGTAACCACTTTACGTCAGAGGAGATCCGGAAATTGCCACTGGAGAGAATGGAATCCCTTTCGAAGATCGCGAGTAAGGCTTTGAAGATTGTCAGGAAAGAATGAGCCGATGTTGAACATTTTGATCTCTTCTAATTGTGTTATGAACAAAATGTGTTTATTTAATGTTCCAAATAATTTTGAATTTCAAAAAATTTAATAAACTCGAATAGTCTACTGTTCTAAAGCGAGCGACACAATTCTAAAAAAGTCTTTATTATTTTCTGTAAAAATGACRAGCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAAAGTTCTATATTTGACAAAATTAGAGCTGTTCTGATCTTTGATAATTAGAATTTTTGGAATTTTCGTTTCCTGAGCTCTGATTTCTTGAATTTTTAAAGTTTCAAGTTTTTAGATTTTTTAGAGTTTTCGGCATTTATGGACCTCTTGGAATTTTGAATTTTCGAATTACCTAATTTTTAAAAATTCTTCTCGATTTTTGAATTGATTTTCAAAATTTCTGGAATTCTATCGAGTTTTATTTTTGTTTAGCATACTCTTAAATTTTCAGACAAATCAAAAAATTCTAGAAAACTTTGCTTTTTACAGTTTCCCTGTTCTTTTGATCACAATTTTTCTCTTCTTATCAGTACAAAAATATTGTATCGAGCCCAAATTAAAGCCATAAAAATGCTTCTTTCTCTTCAAAAATTGTGTTTAAATTTTCTGTTTCCCATTTCATAATGAGCATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTTGATCTCTTCTAATTGTGT</pcr_primer_p1>
		<pcr_primer_p2>GATCAGAACAGCTCTAATTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CATTTTGATCTCTTCTAATTGTGTTATGAACAAAATGTGTTTATTTAATGTTCCAAATAATTTTGAATTTCAAAAAATTTAATAAACTCGAATAGTCTACTGTTCTAAAGCGAGCGACACAATTCTAAAAAAGTCTTTATTATTTTCTGTAAAAATGACGAGCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAAAGTTCTATATTTGACAAAATTAGAGCTGTTCTGATC</canonical_amplicon>
		<polymorphic_amplicon>CATTTTGATCTCTTCTAATTGTGTTATGAACAAAATGTGTTTATTTAATGTTCCAAATAATTTTGAATTTCAAAAAATTTAATAAACTCGAATAGTCTACTGTTCTAAAGCGAGCGACACAATTCTAAAAAAGTCTTTATTATTTTCTGTAAAAATGACRAGCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAAAGTTCTATATTTGACAAAATTAGAGCTGTTCTGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26122</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>8733</contig_pos>
        <strand>+</strand>
        <context>ATTTTCGTTT[C/T]CTGAGCTCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTAGAGCTGTTCTGATCTTTGATAATTAGAATTTTTGGAATTTTCGTTT</left_flank>
        <right_flank>CTGAGCTCTGATTTCTTGAATTTTTAAAGTTTCAAGTTTTTAGATTTTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAACACCACCGAGGCATTACTGAAAATGGCCAATCGATTGGAGCAGGCAGAGGAGATAATCAACACTCTTGAGAGCACGCTGACAGGCAATTCCCTGTGGATCTGTAACCACTTTACGTCAGAGGAGATCCGGAAATTGCCACTGGAGAGAATGGAATCCCTTTCGAAGATCGCGAGTAAGGCTTTGAAGATTGTCAGGAAAGAATGAGCCGATGTTGAACATTTTGATCTCTTCTAATTGTGTTATGAACAAAATGTGTTTATTTAATGTTCCAAATAATTTTGAATTTCAAAAAATTTAATAAACTCGAATAGTCTACTGTTCTAAAGCGAGCGACACAATTCTAAAAAAGTCTTTATTATTTTCTGTAAAAATGACGAGCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAAAGTTCTATATTTGACAAAATTAGAGCTGTTCTGATCTTTGATAATTAGAATTTTTGGAATTTTCGTTTCCTGAGCTCTGATTTCTTGAATTTTTAAAGTTTCAAGTTTTTAGATTTTTTAGAGTTTTCGGCATTTATGGACCTCTTGGAATTTTGAATTTTCGAATTACCTAATTTTTAAAAATTCTTCTCGATTTTTGAATTGATTTTCAAAATTTCTGGAATTCTATCGAGTTTTATTTTTGTTTAGCATACTCTTAAATTTTCAGACAAATCAAAAAATTCTAGAAAACTTTGCTTTTTACAGTTTCCCTGTTCTTTTGATCACAATTTTTCTCTTCTTATCAGTACAAAAATATTGTATCGAGCCCAAATTAAAGCCATAAAAATGCTTCTTTCTCTTCAAAAATTGTGTTTAAATTTTCTGTTTCCCATTTCATAATGAGCATTAAAAATGCTAAATTTTCGTAAATTCAGAAATTCAAAAATCCTGAGGATATTTCTTTTAATCTGTTTCACTATTTTATTCTATCAATTGATAAGACATAAAAATCCAAAAGTCGCGATTTT</canonical>
            <polymorphic>TTAACACCACCGAGGCATTACTGAAAATGGCCAATCGATTGGAGCAGGCAGAGGAGATAATCAACACTCTTGAGAGCACGCTGACAGGCAATTCCCTGTGGATCTGTAACCACTTTACGTCAGAGGAGATCCGGAAATTGCCACTGGAGAGAATGGAATCCCTTTCGAAGATCGCGAGTAAGGCTTTGAAGATTGTCAGGAAAGAATGAGCCGATGTTGAACATTTTGATCTCTTCTAATTGTGTTATGAACAAAATGTGTTTATTTAATGTTCCAAATAATTTTGAATTTCAAAAAATTTAATAAACTCGAATAGTCTACTGTTCTAAAGCGAGCGACACAATTCTAAAAAAGTCTTTATTATTTTCTGTAAAAATGACGAGCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAAAGTTCTATATTTGACAAAATTAGAGCTGTTCTGATCTTTGATAATTAGAATTTTTGGAATTTTCGTTTYCTGAGCTCTGATTTCTTGAATTTTTAAAGTTTCAAGTTTTTAGATTTTTTAGAGTTTTCGGCATTTATGGACCTCTTGGAATTTTGAATTTTCGAATTACCTAATTTTTAAAAATTCTTCTCGATTTTTGAATTGATTTTCAAAATTTCTGGAATTCTATCGAGTTTTATTTTTGTTTAGCATACTCTTAAATTTTCAGACAAATCAAAAAATTCTAGAAAACTTTGCTTTTTACAGTTTCCCTGTTCTTTTGATCACAATTTTTCTCTTCTTATCAGTACAAAAATATTGTATCGAGCCCAAATTAAAGCCATAAAAATGCTTCTTTCTCTTCAAAAATTGTGTTTAAATTTTCTGTTTCCCATTTCATAATGAGCATTAAAAATGCTAAATTTTCGTAAATTCAGAAATTCAAAAATCCTGAGGATATTTCTTTTAATCTGTTTCACTATTTTATTCTATCAATTGATAAGACATAAAAATCCAAAAGTCGCGATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>210 205 105 93 72 69 66 62 42 29 24 15 8</canonical_bands>
                <polymorphic_bands>210 205 108 105 72 69 66 62 42 29 24 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTATGAAGACCTCAAAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>AATTCAAAAATCGAGAAGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAAAGTTCTATATTTGACAAAATTAGAGCTGTTCTGATCTTTGATAATTAGAATTTTTGGAATTTTCGTTTCCTGAGCTCTGATTTCTTGAATTTTTAAAGTTTCAAGTTTTTAGATTTTTTAGAGTTTTCGGCATTTATGGACCTCTTGGAATTTTGAATTTTCGAATTACCTAATTTTTAAAAATTCTTCTCGATTTTTGAATT</canonical_amplicon>
		<polymorphic_amplicon>GCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAAAGTTCTATATTTGACAAAATTAGAGCTGTTCTGATCTTTGATAATTAGAATTTTTGGAATTTTCGTTTYCTGAGCTCTGATTTCTTGAATTTTTAAAGTTTCAAGTTTTTAGATTTTTTAGAGTTTTCGGCATTTATGGACCTCTTGGAATTTTGAATTTTCGAATTACCTAATTTTTAAAAATTCTTCTCGATTTTTGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26123</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>8758</contig_pos>
        <strand>+</strand>
        <context>CTTGAATTTT[A/T]AAAGTTTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTAGAATTTTTGGAATTTTCGTTTCCTGAGCTCTGATTTCTTGAATTTT</left_flank>
        <right_flank>AAAGTTTCAAGTTTTTAGATTTTTTAGAGTTTTCGGCATTTATGGACCTC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGGCCAATCGATTGGAGCAGGCAGAGGAGATAATCAACACTCTTGAGAGCACGCTGACAGGCAATTCCCTGTGGATCTGTAACCACTTTACGTCAGAGGAGATCCGGAAATTGCCACTGGAGAGAATGGAATCCCTTTCGAAGATCGCGAGTAAGGCTTTGAAGATTGTCAGGAAAGAATGAGCCGATGTTGAACATTTTGATCTCTTCTAATTGTGTTATGAACAAAATGTGTTTATTTAATGTTCCAAATAATTTTGAATTTCAAAAAATTTAATAAACTCGAATAGTCTACTGTTCTAAAGCGAGCGACACAATTCTAAAAAAGTCTTTATTATTTTCTGTAAAAATGACGAGCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAAAGTTCTATATTTGACAAAATTAGAGCTGTTCTGATCTTTGATAATTAGAATTTTTGGAATTTTCGTTTCCTGAGCTCTGATTTCTTGAATTTTTAAAGTTTCAAGTTTTTAGATTTTTTAGAGTTTTCGGCATTTATGGACCTCTTGGAATTTTGAATTTTCGAATTACCTAATTTTTAAAAATTCTTCTCGATTTTTGAATTGATTTTCAAAATTTCTGGAATTCTATCGAGTTTTATTTTTGTTTAGCATACTCTTAAATTTTCAGACAAATCAAAAAATTCTAGAAAACTTTGCTTTTTACAGTTTCCCTGTTCTTTTGATCACAATTTTTCTCTTCTTATCAGTACAAAAATATTGTATCGAGCCCAAATTAAAGCCATAAAAATGCTTCTTTCTCTTCAAAAATTGTGTTTAAATTTTCTGTTTCCCATTTCATAATGAGCATTAAAAATGCTAAATTTTCGTAAATTCAGAAATTCAAAAATCCTGAGGATATTTCTTTTAATCTGTTTCACTATTTTATTCTATCAATTGATAAGACATAAAAATCCAAAAGTCGCGATTTTGGTGGTTGTCTCAAATGGGACAGAT</canonical>
            <polymorphic>AATGGCCAATCGATTGGAGCAGGCAGAGGAGATAATCAACACTCTTGAGAGCACGCTGACAGGCAATTCCCTGTGGATCTGTAACCACTTTACGTCAGAGGAGATCCGGAAATTGCCACTGGAGAGAATGGAATCCCTTTCGAAGATCGCGAGTAAGGCTTTGAAGATTGTCAGGAAAGAATGAGCCGATGTTGAACATTTTGATCTCTTCTAATTGTGTTATGAACAAAATGTGTTTATTTAATGTTCCAAATAATTTTGAATTTCAAAAAATTTAATAAACTCGAATAGTCTACTGTTCTAAAGCGAGCGACACAATTCTAAAAAAGTCTTTATTATTTTCTGTAAAAATGACGAGCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAAAGTTCTATATTTGACAAAATTAGAGCTGTTCTGATCTTTGATAATTAGAATTTTTGGAATTTTCGTTTCCTGAGCTCTGATTTCTTGAATTTTWAAAGTTTCAAGTTTTTAGATTTTTTAGAGTTTTCGGCATTTATGGACCTCTTGGAATTTTGAATTTTCGAATTACCTAATTTTTAAAAATTCTTCTCGATTTTTGAATTGATTTTCAAAATTTCTGGAATTCTATCGAGTTTTATTTTTGTTTAGCATACTCTTAAATTTTCAGACAAATCAAAAAATTCTAGAAAACTTTGCTTTTTACAGTTTCCCTGTTCTTTTGATCACAATTTTTCTCTTCTTATCAGTACAAAAATATTGTATCGAGCCCAAATTAAAGCCATAAAAATGCTTCTTTCTCTTCAAAAATTGTGTTTAAATTTTCTGTTTCCCATTTCATAATGAGCATTAAAAATGCTAAATTTTCGTAAATTCAGAAATTCAAAAATCCTGAGGATATTTCTTTTAATCTGTTTCACTATTTTATTCTATCAATTGATAAGACATAAAAATCCAAAAGTCGCGATTTTGGTGGTTGTCTCAAATGGGACAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 238 178 84</canonical_bands>
                <polymorphic_bands>584 238 178</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>241 224 117 89 84 80 57 41 34 33</canonical_bands>
                <polymorphic_bands>308 241 117 89 80 57 41 34 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTATGAAGACCTCAAAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>AATTCAAAAATCGAGAAGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAAAGTTCTATATTTGACAAAATTAGAGCTGTTCTGATCTTTGATAATTAGAATTTTTGGAATTTTCGTTTCCTGAGCTCTGATTTCTTGAATTTTTAAAGTTTCAAGTTTTTAGATTTTTTAGAGTTTTCGGCATTTATGGACCTCTTGGAATTTTGAATTTTCGAATTACCTAATTTTTAAAAATTCTTCTCGATTTTTGAATT</canonical_amplicon>
		<polymorphic_amplicon>GCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAAAGTTCTATATTTGACAAAATTAGAGCTGTTCTGATCTTTGATAATTAGAATTTTTGGAATTTTCGTTTCCTGAGCTCTGATTTCTTGAATTTTWAAAGTTTCAAGTTTTTAGATTTTTTAGAGTTTTCGGCATTTATGGACCTCTTGGAATTTTGAATTTTCGAATTACCTAATTTTTAAAAATTCTTCTCGATTTTTGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26124</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>8769</contig_pos>
        <strand>+</strand>
        <context>AAAGTTTCAA[G/T]TTTTTAGAWT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGGAATTTTCGTTTCCTGAGCTCTGATTTCTTGAATTTTTAAAGTTTCAA</left_flank>
        <right_flank>TTTTTAGATTTTTTAGAGTTTTCGGCATTTATGGACCTCTTGGAATTTTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTGGAGCAGGCAGAGGAGATAATCAACACTCTTGAGAGCACGCTGACAGGCAATTCCCTGTGGATCTGTAACCACTTTACGTCAGAGGAGATCCGGAAATTGCCACTGGAGAGAATGGAATCCCTTTCGAAGATCGCGAGTAAGGCTTTGAAGATTGTCAGGAAAGAATGAGCCGATGTTGAACATTTTGATCTCTTCTAATTGTGTTATGAACAAAATGTGTTTATTTAATGTTCCAAATAATTTTGAATTTCAAAAAATTTAATAAACTCGAATAGTCTACTGTTCTAAAGCGAGCGACACAATTCTAAAAAAGTCTTTATTATTTTCTGTAAAAATGACGAGCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAAAGTTCTATATTTGACAAAATTAGAGCTGTTCTGATCTTTGATAATTAGAATTTTTGGAATTTTCGTTTCCTGAGCTCTGATTTCTTGAATTTTTAAAGTTTCAAGTTTTTAGATTTTTTAGAGTTTTCGGCATTTATGGACCTCTTGGAATTTTGAATTTTCGAATTACCTAATTTTTAAAAATTCTTCTCGATTTTTGAATTGATTTTCAAAATTTCTGGAATTCTATCGAGTTTTATTTTTGTTTAGCATACTCTTAAATTTTCAGACAAATCAAAAAATTCTAGAAAACTTTGCTTTTTACAGTTTCCCTGTTCTTTTGATCACAATTTTTCTCTTCTTATCAGTACAAAAATATTGTATCGAGCCCAAATTAAAGCCATAAAAATGCTTCTTTCTCTTCAAAAATTGTGTTTAAATTTTCTGTTTCCCATTTCATAATGAGCATTAAAAATGCTAAATTTTCGTAAATTCAGAAATTCAAAAATCCTGAGGATATTTCTTTTAATCTGTTTCACTATTTTATTCTATCAATTGATAAGACATAAAAATCCAAAAGTCGCGATTTTGGTGGTTGTCTCAAATGGGACAGATCTTGAAGAATA</canonical>
            <polymorphic>GATTGGAGCAGGCAGAGGAGATAATCAACACTCTTGAGAGCACGCTGACAGGCAATTCCCTGTGGATCTGTAACCACTTTACGTCAGAGGAGATCCGGAAATTGCCACTGGAGAGAATGGAATCCCTTTCGAAGATCGCGAGTAAGGCTTTGAAGATTGTCAGGAAAGAATGAGCCGATGTTGAACATTTTGATCTCTTCTAATTGTGTTATGAACAAAATGTGTTTATTTAATGTTCCAAATAATTTTGAATTTCAAAAAATTTAATAAACTCGAATAGTCTACTGTTCTAAAGCGAGCGACACAATTCTAAAAAAGTCTTTATTATTTTCTGTAAAAATGACGAGCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAAAGTTCTATATTTGACAAAATTAGAGCTGTTCTGATCTTTGATAATTAGAATTTTTGGAATTTTCGTTTCCTGAGCTCTGATTTCTTGAATTTTTAAAGTTTCAAKTTTTTAGATTTTTTAGAGTTTTCGGCATTTATGGACCTCTTGGAATTTTGAATTTTCGAATTACCTAATTTTTAAAAATTCTTCTCGATTTTTGAATTGATTTTCAAAATTTCTGGAATTCTATCGAGTTTTATTTTTGTTTAGCATACTCTTAAATTTTCAGACAAATCAAAAAATTCTAGAAAACTTTGCTTTTTACAGTTTCCCTGTTCTTTTGATCACAATTTTTCTCTTCTTATCAGTACAAAAATATTGTATCGAGCCCAAATTAAAGCCATAAAAATGCTTCTTTCTCTTCAAAAATTGTGTTTAAATTTTCTGTTTCCCATTTCATAATGAGCATTAAAAATGCTAAATTTTCGTAAATTCAGAAATTCAAAAATCCTGAGGATATTTCTTTTAATCTGTTTCACTATTTTATTCTATCAATTGATAAGACATAAAAATCCAAAAGTCGCGATTTTGGTGGTTGTCTCAAATGGGACAGATCTTGAAGAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTATGAAGACCTCAAAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>AATTCAAAAATCGAGAAGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAAAGTTCTATATTTGACAAAATTAGAGCTGTTCTGATCTTTGATAATTAGAATTTTTGGAATTTTCGTTTCCTGAGCTCTGATTTCTTGAATTTTTAAAGTTTCAAGTTTTTAGATTTTTTAGAGTTTTCGGCATTTATGGACCTCTTGGAATTTTGAATTTTCGAATTACCTAATTTTTAAAAATTCTTCTCGATTTTTGAATT</canonical_amplicon>
		<polymorphic_amplicon>GCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAAAGTTCTATATTTGACAAAATTAGAGCTGTTCTGATCTTTGATAATTAGAATTTTTGGAATTTTCGTTTCCTGAGCTCTGATTTCTTGAATTTTTAAAGTTTCAAKTTTTTAGATTTTTTAGAGTTTTCGGCATTTATGGACCTCTTGGAATTTTGAATTTTCGAATTACCTAATTTTTAAAAATTCTTCTCGATTTTTGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26125</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>8778</contig_pos>
        <strand>+</strand>
        <context>AKTTTTTAGA[A/T]TTTTTAGAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGTTTCCTGAGCTCTGATTTCTTGAATTTTTAAAGTTTCAAGTTTTTAGA</left_flank>
        <right_flank>TTTTTAGAGTTTTCGGCATTTATGGACCTCTTGGAATTTTGAATTTTCGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGCAGAGGAGATAATCAACACTCTTGAGAGCACGCTGACAGGCAATTCCCTGTGGATCTGTAACCACTTTACGTCAGAGGAGATCCGGAAATTGCCACTGGAGAGAATGGAATCCCTTTCGAAGATCGCGAGTAAGGCTTTGAAGATTGTCAGGAAAGAATGAGCCGATGTTGAACATTTTGATCTCTTCTAATTGTGTTATGAACAAAATGTGTTTATTTAATGTTCCAAATAATTTTGAATTTCAAAAAATTTAATAAACTCGAATAGTCTACTGTTCTAAAGCGAGCGACACAATTCTAAAAAAGTCTTTATTATTTTCTGTAAAAATGACGAGCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAAAGTTCTATATTTGACAAAATTAGAGCTGTTCTGATCTTTGATAATTAGAATTTTTGGAATTTTCGTTTCCTGAGCTCTGATTTCTTGAATTTTTAAAGTTTCAAGTTTTTAGATTTTTTAGAGTTTTCGGCATTTATGGACCTCTTGGAATTTTGAATTTTCGAATTACCTAATTTTTAAAAATTCTTCTCGATTTTTGAATTGATTTTCAAAATTTCTGGAATTCTATCGAGTTTTATTTTTGTTTAGCATACTCTTAAATTTTCAGACAAATCAAAAAATTCTAGAAAACTTTGCTTTTTACAGTTTCCCTGTTCTTTTGATCACAATTTTTCTCTTCTTATCAGTACAAAAATATTGTATCGAGCCCAAATTAAAGCCATAAAAATGCTTCTTTCTCTTCAAAAATTGTGTTTAAATTTTCTGTTTCCCATTTCATAATGAGCATTAAAAATGCTAAATTTTCGTAAATTCAGAAATTCAAAAATCCTGAGGATATTTCTTTTAATCTGTTTCACTATTTTATTCTATCAATTGATAAGACATAAAAATCCAAAAGTCGCGATTTTGGTGGTTGTCTCAAATGGGACAGATCTTGAAGAATATCGAATATC</canonical>
            <polymorphic>AGGCAGAGGAGATAATCAACACTCTTGAGAGCACGCTGACAGGCAATTCCCTGTGGATCTGTAACCACTTTACGTCAGAGGAGATCCGGAAATTGCCACTGGAGAGAATGGAATCCCTTTCGAAGATCGCGAGTAAGGCTTTGAAGATTGTCAGGAAAGAATGAGCCGATGTTGAACATTTTGATCTCTTCTAATTGTGTTATGAACAAAATGTGTTTATTTAATGTTCCAAATAATTTTGAATTTCAAAAAATTTAATAAACTCGAATAGTCTACTGTTCTAAAGCGAGCGACACAATTCTAAAAAAGTCTTTATTATTTTCTGTAAAAATGACGAGCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAAAGTTCTATATTTGACAAAATTAGAGCTGTTCTGATCTTTGATAATTAGAATTTTTGGAATTTTCGTTTCCTGAGCTCTGATTTCTTGAATTTTTAAAGTTTCAAGTTTTTAGAWTTTTTAGAGTTTTCGGCATTTATGGACCTCTTGGAATTTTGAATTTTCGAATTACCTAATTTTTAAAAATTCTTCTCGATTTTTGAATTGATTTTCAAAATTTCTGGAATTCTATCGAGTTTTATTTTTGTTTAGCATACTCTTAAATTTTCAGACAAATCAAAAAATTCTAGAAAACTTTGCTTTTTACAGTTTCCCTGTTCTTTTGATCACAATTTTTCTCTTCTTATCAGTACAAAAATATTGTATCGAGCCCAAATTAAAGCCATAAAAATGCTTCTTTCTCTTCAAAAATTGTGTTTAAATTTTCTGTTTCCCATTTCATAATGAGCATTAAAAATGCTAAATTTTCGTAAATTCAGAAATTCAAAAATCCTGAGGATATTTCTTTTAATCTGTTTCACTATTTTATTCTATCAATTGATAAGACATAAAAATCCAAAAGTCGCGATTTTGGTGGTTGTCTCAAATGGGACAGATCTTGAAGAATATCGAATATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTATGAAGACCTCAAAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>AATTCAAAAATCGAGAAGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAAAGTTCTATATTTGACAAAATTAGAGCTGTTCTGATCTTTGATAATTAGAATTTTTGGAATTTTCGTTTCCTGAGCTCTGATTTCTTGAATTTTTAAAGTTTCAAGTTTTTAGATTTTTTAGAGTTTTCGGCATTTATGGACCTCTTGGAATTTTGAATTTTCGAATTACCTAATTTTTAAAAATTCTTCTCGATTTTTGAATT</canonical_amplicon>
		<polymorphic_amplicon>GCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAAAGTTCTATATTTGACAAAATTAGAGCTGTTCTGATCTTTGATAATTAGAATTTTTGGAATTTTCGTTTCCTGAGCTCTGATTTCTTGAATTTTTAAAGTTTCAAGTTTTTAGAWTTTTTAGAGTTTTCGGCATTTATGGACCTCTTGGAATTTTGAATTTTCGAATTACCTAATTTTTAAAAATTCTTCTCGATTTTTGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26126</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>8899</contig_pos>
        <strand></strand>
        <context>TCTATCGagt[T/A]ttatttttgt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCTTCTCGATTTTTGAATTGATTTTCAAAATTTCTGGAATTCTATCGAGT</left_flank>
        <right_flank>TTATTTTTGTTTAGCATACTCTTAAATTTTCAGACAAATCAAAAAATTCT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGATCGCGAGTAAGGCTTTGAAGATTGTCAGGAAAGAATGAGCCGATGTTGAACATTTTGATCTCTTCTAATTGTGTTATGAACAAAATGTGTTTATTTAATGTTCCAAATAATTTTGAATTTCAAAAAATTTAATAAACTCGAATAGTCTACTGTTCTAAAGCGAGCGACACAATTCTAAAAAAGTCTTTATTATTTTCTGTAAAAATGACGAGCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAAAGTTCTATATTTGACAAAATTAGAGCTGTTCTGATCTTTGATAATTAGAATTTTTGGAATTTTCGTTTCCTGAGCTCTGATTTCTTGAATTTTTAAAGTTTCAAGTTTTTAGATTTTTTAGAGTTTTCGGCATTTATGGACCTCTTGGAATTTTGAATTTTCGAATTACCTAATTTTTAAAAATTCTTCTCGATTTTTGAATTGATTTTCAAAATTTCTGGAATTCTATCGAGTTTTATTTTTGTTTAGCATACTCTTAAATTTTCAGACAAATCAAAAAATTCTAGAAAACTTTGCTTTTTACAGTTTCCCTGTTCTTTTGATCACAATTTTTCTCTTCTTATCAGTACAAAAATATTGTATCGAGCCCAAATTAAAGCCATAAAAATGCTTCTTTCTCTTCAAAAATTGTGTTTAAATTTTCTGTTTCCCATTTCATAATGAGCATTAAAAATGCTAAATTTTCGTAAATTCAGAAATTCAAAAATCCTGAGGATATTTCTTTTAATCTGTTTCACTATTTTATTCTATCAATTGATAAGACATAAAAATCCAAAAGTCGCGATTTTGGTGGTTGTCTCAAATGGGACAGATCTTGAAGAATATCGAATATCGTTGGGTGAGTTTGGTGGCCTAGAAAACAGGATTTTGAAACAGTTAGGCCACCAAATTTTTTCGCATGCTTTGATAACGCTTATCGTTAGAGTAATAGCCGAGAAAACCAGATTGTTAATA</canonical>
            <polymorphic>GAAGATCGCGAGTAAGGCTTTGAAGATTGTCAGGAAAGAATGAGCCGATGTTGAACATTTTGATCTCTTCTAATTGTGTTATGAACAAAATGTGTTTATTTAATGTTCCAAATAATTTTGAATTTCAAAAAATTTAATAAACTCGAATAGTCTACTGTTCTAAAGCGAGCGACACAATTCTAAAAAAGTCTTTATTATTTTCTGTAAAAATGACGAGCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAAAGTTCTATATTTGACAAAATTAGAGCTGTTCTGATCTTTGATAATTAGAATTTTTGGAATTTTCGTTTCCTGAGCTCTGATTTCTTGAATTTTTAAAGTTTCAAGTTTTTAGATTTTTTAGAGTTTTCGGCATTTATGGACCTCTTGGAATTTTGAATTTTCGAATTACCTAATTTTTAAAAATTCTTCTCGATTTTTGAATTGATTTTCAAAATTTCTGGAATTCTATCGAGTWTTATTTTTGTTTAGCATACTCTTAAATTTTCAGACAAATCAAAAAATTCTAGAAAACTTTGCTTTTTACAGTTTCCCTGTTCTTTTGATCACAATTTTTCTCTTCTTATCAGTACAAAAATATTGTATCGAGCCCAAATTAAAGCCATAAAAATGCTTCTTTCTCTTCAAAAATTGTGTTTAAATTTTCTGTTTCCCATTTCATAATGAGCATTAAAAATGCTAAATTTTCGTAAATTCAGAAATTCAAAAATCCTGAGGATATTTCTTTTAATCTGTTTCACTATTTTATTCTATCAATTGATAAGACATAAAAATCCAAAAGTCGCGATTTTGGTGGTTGTCTCAAATGGGACAGATCTTGAAGAATATCGAATATCGTTGGGTGAGTTTGGTGGCCTAGAAAACAGGATTTTGAAACAGTTAGGCCACCAAATTTTTTCGCATGCTTTGATAACGCTTATCGTTAGAGTAATAGCCGAGAAAACCAGATTGTTAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTGAATTTTCGAATTACCT</pcr_primer_p1>
		<pcr_primer_p2>AGAAGCATTTTTATGGCTTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATTTTGAATTTTCGAATTACCTAATTTTTAAAAATTCTTCTCGATTTTTGAATTGATTTTCAAAATTTCTGGAATTCTATCGAGTTTTATTTTTGTTTAGCATACTCTTAAATTTTCAGACAAATCAAAAAATTCTAGAAAACTTTGCTTTTTACAGTTTCCCTGTTCTTTTGATCACAATTTTTCTCTTCTTATCAGTACAAAAATATTGTATCGAGCCCAAATTAAAGCCATAAAAATGCTTCT</canonical_amplicon>
		<polymorphic_amplicon>AATTTTGAATTTTCGAATTACCTAATTTTTAAAAATTCTTCTCGATTTTTGAATTGATTTTCAAAATTTCTGGAATTCTATCGAGTWTTATTTTTGTTTAGCATACTCTTAAATTTTCAGACAAATCAAAAAATTCTAGAAAACTTTGCTTTTTACAGTTTCCCTGTTCTTTTGATCACAATTTTTCTCTTCTTATCAGTACAAAAATATTGTATCGAGCCCAAATTAAAGCCATAAAAATGCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26127</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>8940</contig_pos>
        <strand></strand>
        <context>cagacaaatc[A/G]aaaaattcta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTATCGAGTTTTATTTTTGTTTAGCATACTCTTAAATTTTCAGACAAATC</left_flank>
        <right_flank>AAAAATTCTAGAAAACTTTGCTTTTTACAGTTTCCCTGTTCTTTTGATCA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCCGATGTTGAACATTTTGATCTCTTCTAATTGTGTTATGAACAAAATGTGTTTATTTAATGTTCCAAATAATTTTGAATTTCAAAAAATTTAATAAACTCGAATAGTCTACTGTTCTAAAGCGAGCGACACAATTCTAAAAAAGTCTTTATTATTTTCTGTAAAAATGACGAGCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAAAGTTCTATATTTGACAAAATTAGAGCTGTTCTGATCTTTGATAATTAGAATTTTTGGAATTTTCGTTTCCTGAGCTCTGATTTCTTGAATTTTTAAAGTTTCAAGTTTTTAGATTTTTTAGAGTTTTCGGCATTTATGGACCTCTTGGAATTTTGAATTTTCGAATTACCTAATTTTTAAAAATTCTTCTCGATTTTTGAATTGATTTTCAAAATTTCTGGAATTCTATCGAGTTTTATTTTTGTTTAGCATACTCTTAAATTTTCAGACAAATCAAAAAATTCTAGAAAACTTTGCTTTTTACAGTTTCCCTGTTCTTTTGATCACAATTTTTCTCTTCTTATCAGTACAAAAATATTGTATCGAGCCCAAATTAAAGCCATAAAAATGCTTCTTTCTCTTCAAAAATTGTGTTTAAATTTTCTGTTTCCCATTTCATAATGAGCATTAAAAATGCTAAATTTTCGTAAATTCAGAAATTCAAAAATCCTGAGGATATTTCTTTTAATCTGTTTCACTATTTTATTCTATCAATTGATAAGACATAAAAATCCAAAAGTCGCGATTTTGGTGGTTGTCTCAAATGGGACAGATCTTGAAGAATATCGAATATCGTTGGGTGAGTTTGGTGGCCTAGAAAACAGGATTTTGAAACAGTTAGGCCACCAAATTTTTTCGCATGCTTTGATAACGCTTATCGTTAGAGTAATAGCCGAGAAAACCAGATTGTTAATAAAAAGTTAAACCACGAAATATTTCTTTAACAGATAGTGTAA</canonical>
            <polymorphic>GAGCCGATGTTGAACATTTTGATCTCTTCTAATTGTGTTATGAACAAAATGTGTTTATTTAATGTTCCAAATAATTTTGAATTTCAAAAAATTTAATAAACTCGAATAGTCTACTGTTCTAAAGCGAGCGACACAATTCTAAAAAAGTCTTTATTATTTTCTGTAAAAATGACGAGCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAAAGTTCTATATTTGACAAAATTAGAGCTGTTCTGATCTTTGATAATTAGAATTTTTGGAATTTTCGTTTCCTGAGCTCTGATTTCTTGAATTTTTAAAGTTTCAAGTTTTTAGATTTTTTAGAGTTTTCGGCATTTATGGACCTCTTGGAATTTTGAATTTTCGAATTACCTAATTTTTAAAAATTCTTCTCGATTTTTGAATTGATTTTCAAAATTTCTGGAATTCTATCGAGTTTTATTTTTGTTTAGCATACTCTTAAATTTTCAGACAAATCRAAAAATTCTAGAAAACTTTGCTTTTTACAGTTTCCCTGTTCTTTTGATCACAATTTTTCTCTTCTTATCAGTACAAAAATATTGTATCGAGCCCAAATTAAAGCCATAAAAATGCTTCTTTCTCTTCAAAAATTGTGTTTAAATTTTCTGTTTCCCATTTCATAATGAGCATTAAAAATGCTAAATTTTCGTAAATTCAGAAATTCAAAAATCCTGAGGATATTTCTTTTAATCTGTTTCACTATTTTATTCTATCAATTGATAAGACATAAAAATCCAAAAGTCGCGATTTTGGTGGTTGTCTCAAATGGGACAGATCTTGAAGAATATCGAATATCGTTGGGTGAGTTTGGTGGCCTAGAAAACAGGATTTTGAAACAGTTAGGCCACCAAATTTTTTCGCATGCTTTGATAACGCTTATCGTTAGAGTAATAGCCGAGAAAACCAGATTGTTAATAAAAAGTTAAACCACGAAATATTTCTTTAACAGATAGTGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTGAATTTTCGAATTACCT</pcr_primer_p1>
		<pcr_primer_p2>AGAAGCATTTTTATGGCTTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATTTTGAATTTTCGAATTACCTAATTTTTAAAAATTCTTCTCGATTTTTGAATTGATTTTCAAAATTTCTGGAATTCTATCGAGTTTTATTTTTGTTTAGCATACTCTTAAATTTTCAGACAAATCAAAAAATTCTAGAAAACTTTGCTTTTTACAGTTTCCCTGTTCTTTTGATCACAATTTTTCTCTTCTTATCAGTACAAAAATATTGTATCGAGCCCAAATTAAAGCCATAAAAATGCTTCT</canonical_amplicon>
		<polymorphic_amplicon>AATTTTGAATTTTCGAATTACCTAATTTTTAAAAATTCTTCTCGATTTTTGAATTGATTTTCAAAATTTCTGGAATTCTATCGAGTTTTATTTTTGTTTAGCATACTCTTAAATTTTCAGACAAATCRAAAAATTCTAGAAAACTTTGCTTTTTACAGTTTCCCTGTTCTTTTGATCACAATTTTTCTCTTCTTATCAGTACAAAAATATTGTATCGAGCCCAAATTAAAGCCATAAAAATGCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26128</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>9025</contig_pos>
        <strand>+</strand>
        <context>AAAAATATTG[C/T]ATCGAGCCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTGTTCTTTTGATCACAATTTTTCTCTTCTTATCAGTACAAAAATATTG</left_flank>
        <right_flank>ATCGAGCCCAAATTAAAGCCATAAAAATGCTTCTTTCTCTTCAAAAATTG</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAATTTAATAAACTCGAATAGTCTACTGTTCTAAAGCGAGCGACACAATTCTAAAAAAGTCTTTATTATTTTCTGTAAAAATGACGAGCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAAAGTTCTATATTTGACAAAATTAGAGCTGTTCTGATCTTTGATAATTAGAATTTTTGGAATTTTCGTTTCCTGAGCTCTGATTTCTTGAATTTTTAAAGTTTCAAGTTTTTAGATTTTTTAGAGTTTTCGGCATTTATGGACCTCTTGGAATTTTGAATTTTCGAATTACCTAATTTTTAAAAATTCTTCTCGATTTTTGAATTGATTTTCAAAATTTCTGGAATTCTATCGAGTTTTATTTTTGTTTAGCATACTCTTAAATTTTCAGACAAATCAAAAAATTCTAGAAAACTTTGCTTTTTACAGTTTCCCTGTTCTTTTGATCACAATTTTTCTCTTCTTATCAGTACAAAAATATTGTATCGAGCCCAAATTAAAGCCATAAAAATGCTTCTTTCTCTTCAAAAATTGTGTTTAAATTTTCTGTTTCCCATTTCATAATGAGCATTAAAAATGCTAAATTTTCGTAAATTCAGAAATTCAAAAATCCTGAGGATATTTCTTTTAATCTGTTTCACTATTTTATTCTATCAATTGATAAGACATAAAAATCCAAAAGTCGCGATTTTGGTGGTTGTCTCAAATGGGACAGATCTTGAAGAATATCGAATATCGTTGGGTGAGTTTGGTGGCCTAGAAAACAGGATTTTGAAACAGTTAGGCCACCAAATTTTTTCGCATGCTTTGATAACGCTTATCGTTAGAGTAATAGCCGAGAAAACCAGATTGTTAATAAAAAGTTAAACCACGAAATATTTCTTTAACAGATAGTGTAAAATGCTATGCCAGGATTCATGGATACCAATTTATTCTGATTAGAGATACCGGACCAAATGAAGCCTGTCAGCAAAATGAGGTGAG</canonical>
            <polymorphic>AAAAAATTTAATAAACTCGAATAGTCTACTGTTCTAAAGCGAGCGACACAATTCTAAAAAAGTCTTTATTATTTTCTGTAAAAATGACGAGCTATGAAGACCTCAAAAAGTGTTCCAGAATTTTGCGATTTGTCTGAAAAGTTCTATATTTGACAAAATTAGAGCTGTTCTGATCTTTGATAATTAGAATTTTTGGAATTTTCGTTTCCTGAGCTCTGATTTCTTGAATTTTTAAAGTTTCAAGTTTTTAGATTTTTTAGAGTTTTCGGCATTTATGGACCTCTTGGAATTTTGAATTTTCGAATTACCTAATTTTTAAAAATTCTTCTCGATTTTTGAATTGATTTTCAAAATTTCTGGAATTCTATCGAGTTTTATTTTTGTTTAGCATACTCTTAAATTTTCAGACAAATCAAAAAATTCTAGAAAACTTTGCTTTTTACAGTTTCCCTGTTCTTTTGATCACAATTTTTCTCTTCTTATCAGTACAAAAATATTGYATCGAGCCCAAATTAAAGCCATAAAAATGCTTCTTTCTCTTCAAAAATTGTGTTTAAATTTTCTGTTTCCCATTTCATAATGAGCATTAAAAATGCTAAATTTTCGTAAATTCAGAAATTCAAAAATCCTGAGGATATTTCTTTTAATCTGTTTCACTATTTTATTCTATCAATTGATAAGACATAAAAATCCAAAAGTCGCGATTTTGGTGGTTGTCTCAAATGGGACAGATCTTGAAGAATATCGAATATCGTTGGGTGAGTTTGGTGGCCTAGAAAACAGGATTTTGAAACAGTTAGGCCACCAAATTTTTTCGCATGCTTTGATAACGCTTATCGTTAGAGTAATAGCCGAGAAAACCAGATTGTTAATAAAAAGTTAAACCACGAAATATTTCTTTAACAGATAGTGTAAAATGCTATGCCAGGATTCATGGATACCAATTTATTCTGATTAGAGATACCGGACCAAATGAAGCCTGTCAGCAAAATGAGGTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTCTCGATTTTTGAATTGAT</pcr_primer_p1>
		<pcr_primer_p2>GGAAACAGAAAATTTAAACACAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTTCTCGATTTTTGAATTGATTTTCAAAATTTCTGGAATTCTATCGAGTTTTATTTTTGTTTAGCATACTCTTAAATTTTCAGACAAATCAAAAAATTCTAGAAAACTTTGCTTTTTACAGTTTCCCTGTTCTTTTGATCACAATTTTTCTCTTCTTATCAGTACAAAAATATTGTATCGAGCCCAAATTAAAGCCATAAAAATGCTTCTTTCTCTTCAAAAATTGTGTTTAAATTTTCTGTTTCC</canonical_amplicon>
		<polymorphic_amplicon>TCTTCTCGATTTTTGAATTGATTTTCAAAATTTCTGGAATTCTATCGAGTTTTATTTTTGTTTAGCATACTCTTAAATTTTCAGACAAATCAAAAAATTCTAGAAAACTTTGCTTTTTACAGTTTCCCTGTTCTTTTGATCACAATTTTTCTCTTCTTATCAGTACAAAAATATTGYATCGAGCCCAAATTAAAGCCATAAAAATGCTTCTTTCTCTTCAAAAATTGTGTTTAAATTTTCTGTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26129</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>103312</contig_pos>
        <strand>+</strand>
        <context>GCGAGAGAAT[C/T]ATTTGAAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGATCATACAATGCTACCCGACTTGGAATCCCGGAACTATGCGAGAGAAT</left_flank>
        <right_flank>ATTTGAAAAGGTTTATGGGAATATGGAAAATCTCAGTATGAAGATTGCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGTGTAATTTTTCTGAAAATTGAGAGAGTAAAAATATTTCAGTACGTCTTCACTTATAGATATTCTGCTGTATTTTTTATAGTGGAGGGTCCGTTTTTTGAGGTTAGTTTATACAAAACATTGGGTTCAAATGATTGAAAATGATCTTGAATCAATTAGGAACATTTTCATTTTTTAAATTCTAAGTCGAAAAAGTCAAGAGACCTAACCGCGTAGCTCCAGACTTTTTGATTGGGTTTTTTTTAGAAATCCCGAATCGGAGAATACCTTGTTGCTGGCCGTTGCGCTGTTATTGGTTCCACCTATGGAGTCCTAAATTCTCATTTTGTTTATCGATTTTTGTCCCTGAAAAATCATCACTTCGTAACCGAGTACTTTAATCCTTACGGTTTGATTTTATCAGCAGTCTGGGTCCTTTTCCACTATTTATCCTGGTCTGTAATAGCCGATCATACAATGCTACCCGACTTGGAATCCCGGAACTATGCGAGAGAATCATTTGAAAAGGTTTATGGGAATATGGAAAATCTCAGTATGAAGATTGCAACCTATTCGGTAAGTGAGGTAGATTAATCTCAATAGAGCGCGCTTTCCAGGAGGTCTCTTCCGAAGTAATGCTTCGCTCATGGTTGGGAACCCTTTGGGTGACAATTTTATCATCTTATTCTATTATTTTATATTTTGTGCTGGGTTACAAGGTGAGACAGCGTTCTTGAGTAAATTCATGAGCAAGAAATACGAAAAACAATAATTACGGTCATAACGGACTAACAGCTATCATAACAATATCATAATGGCTCACTGACGGCCCAGCGAGCATTTGATGAGCCTATGACATGTTAAGAAAACCAAAGGTTTCCAGATAATGACCAGTTTAAGCCACGGATTGGACTATATGAGTGCACGGACCCTTCAAATGCAGAGAAGATTGTTTTGGGCGTTGGCCATTCAAACAGTTATTCCAATTGTTGTCAGTTTTATGCCAACTGTTTTTGTA</canonical>
            <polymorphic>TTTTGTGTAATTTTTCTGAAAATTGAGAGAGTAAAAATATTTCAGTACGTCTTCACTTATAGATATTCTGCTGTATTTTTTATAGTGGAGGGTCCGTTTTTTGAGGTTAGTTTATACAAAACATTGGGTTCAAATGATTGAAAATGATCTTGAATCAATTAGGAACATTTTCATTTTTTAAATTCTAAGTCGAAAAAGTCAAGAGACCTAACCGCGTAGCTCCAGACTTTTTGATTGGGTTTTTTTTAGAAATCCCGAATCGGAGAATACCTTGTTGCTGGCCGTTGCGCTGTTATTGGTTCCACCTATGGAGTCCTAAATTCTCATTTTGTTTATCGATTTTTGTCCCTGAAAAATCATCACTTCGTAACCGAGTACTTTAATCCTTACGGTTTGATTTTATCAGCAGTCTGGGTCCTTTTCCACTATTTATCCTGGTCTGTAATAGCCGATCATACAATGCTACCCGACTTGGAATCCCGGAACTATGCGAGAGAATYATTTGAAAAGGTTTATGGGAATATGGAAAATCTCAGTATGAAGATTGCAACCTATTCGGTAAGTGAGGTAGATTAATCTCAATAGAGCGCGCTTTCCAGGAGGTCTCTTCCGAAGTAATGCTTCGCTCATGGTTGGGAACCCTTTGGGTGACAATTTTATCATCTTATTCTATTATTTTATATTTTGTGCTGGGTTACAAGGTGAGACAGCGTTCTTGAGTAAATTCATGAGCAAGAAATACGAAAAACAATAATTACGGTCATAACGGACTAACAGCTATCATAACAATATCATAATGGCTCACTGACGGCCCAGCGAGCATTTGATGAGCCTATGACATGTTAAGAAAACCAAAGGTTTCCAGATAATGACCAGTTTAAGCCACGGATTGGACTATATGAGTGCACGGACCCTTCAAATGCAGAGAAGATTGTTTTGGGCGTTGGCCATTCAAACAGTTATTCCAATTGTTGTCAGTTTTATGCCAACTGTTTTTGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>504 164 152 105 54 21</canonical_bands>
                <polymorphic_bands>525 164 152 105 54</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>504 218 152 105 21</canonical_bands>
                <polymorphic_bands>525 218 152 105</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGGAGTCCTAAATTCTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATAGGTTGCAATCTTCATACTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGGAGTCCTAAATTCTCATTTTGTTTATCGATTTTTGTCCCTGAAAAATCATCACTTCGTAACCGAGTACTTTAATCCTTACGGTTTGATTTTATCAGCAGTCTGGGTCCTTTTCCACTATTTATCCTGGTCTGTAATAGCCGATCATACAATGCTACCCGACTTGGAATCCCGGAACTATGCGAGAGAATCATTTGAAAAGGTTTATGGGAATATGGAAAATCTCAGTATGAAGATTGCAACCTATT</canonical_amplicon>
		<polymorphic_amplicon>ATGGAGTCCTAAATTCTCATTTTGTTTATCGATTTTTGTCCCTGAAAAATCATCACTTCGTAACCGAGTACTTTAATCCTTACGGTTTGATTTTATCAGCAGTCTGGGTCCTTTTCCACTATTTATCCTGGTCTGTAATAGCCGATCATACAATGCTACCCGACTTGGAATCCCGGAACTATGCGAGAGAATYATTTGAAAAGGTTTATGGGAATATGGAAAATCTCAGTATGAAGATTGCAACCTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26130</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>103882</contig_pos>
        <strand>+</strand>
        <context>TTGGTAACTT[A/T]AAAAAATATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTTTGACGTTTTTGGGTTTGTAATTTGGAAAATTAAAGATTGGTAACTT</left_flank>
        <right_flank>AAAAAATATTTTCAGTTGGATAAATTGGGTGTCCGCAATTGCTATAACAT</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTAATCTCAATAGAGCGCGCTTTCCAGGAGGTCTCTTCCGAAGTAATGCTTCGCTCATGGTTGGGAACCCTTTGGGTGACAATTTTATCATCTTATTCTATTATTTTATATTTTGTGCTGGGTTACAAGGTGAGACAGCGTTCTTGAGTAAATTCATGAGCAAGAAATACGAAAAACAATAATTACGGTCATAACGGACTAACAGCTATCATAACAATATCATAATGGCTCACTGACGGCCCAGCGAGCATTTGATGAGCCTATGACATGTTAAGAAAACCAAAGGTTTCCAGATAATGACCAGTTTAAGCCACGGATTGGACTATATGAGTGCACGGACCCTTCAAATGCAGAGAAGATTGTTTTGGGCGTTGGCCATTCAAACAGTTATTCCAATTGTTGTCAGTTTTATGCCAACTGTTTTTGTACTGTATGGAGCCGCATTTGGTTTTGACGTTTTTGGGTTTGTAATTTGGAAAATTAAAGATTGGTAACTTAAAAAAATATTTTCAGTTGGATAAATTGGGTGTCCGCAATTGCTATAACATTTTTCCCATTTCTGGATCCACTGGCTATCACAATGTGCCTTCCAGCTCTGAGGCATCGGATATTTTATAAGCATAAAATTGCTAATTTGACTCCGAATTTGTCGAATCGAATCATTTATAGTAGTTCAAACAGATTATGATTTTTTTCTTGTGGATTTTTGGACTTCAAAAAAAATTTTTGGACTTCAAAAAAAAACTTTTAAAAAAATTTGGATTAAAATTTGTTGAATGGAATAGTTTTTAGCTTTGAGAATTTCGAGTTCAAAAATGATATTTTTGAATTATTGAAAATTGTTTCTGGCATCAAAGATCACTTTTTTTTGACTCATAAAACTCGGAAATTTTGTCATTAAATATTTTCTTCGAATTTCAAACTAAAACATTGCGGTTCACTGATTTTAATGAGATAGACAGGTAAGAAAATATCACAAGATTTTTTATTAAATCAAA</canonical>
            <polymorphic>GATTAATCTCAATAGAGCGCGCTTTCCAGGAGGTCTCTTCCGAAGTAATGCTTCGCTCATGGTTGGGAACCCTTTGGGTGACAATTTTATCATCTTATTCTATTATTTTATATTTTGTGCTGGGTTACAAGGTGAGACAGCGTTCTTGAGTAAATTCATGAGCAAGAAATACGAAAAACAATAATTACGGTCATAACGGACTAACAGCTATCATAACAATATCATAATGGCTCACTGACGGCCCAGCGAGCATTTGATGAGCCTATGACATGTTAAGAAAACCAAAGGTTTCCAGATAATGACCAGTTTAAGCCACGGATTGGACTATATGAGTGCACGGACCCTTCAAATGCAGAGAAGATTGTTTTGGGCGTTGGCCATTCAAACAGTTATTCCAATTGTTGTCAGTTTTATGCCAACTGTTTTTGTACTGTATGGAGCCGCATTTGGTTTTGACGTTTTTGGGTTTGTAATTTGGAAAATTAAAGATTGGTAACTTWAAAAAATATTTTCAGTTGGATAAATTGGGTGTCCGCAATTGCTATAACATTTTTCCCATTTCTGGATCCACTGGCTATCACAATGTGCCTTCCAGCTCTGAGGCATCGGATATTTTATAAGCATAAAATTGCTAATTTGACTCCGAATTTGTCGAATCGAATCATTTATAGTAGTTCAAACAGATTATGATTTTTTTCTTGTGGATTTTTGGACTTCAAAAAAAATTTTTGGACTTCAAAAAAAAACTTTTAAAAAAATTTGGATTAAAATTTGTTGAATGGAATAGTTTTTAGCTTTGAGAATTTCGAGTTCAAAAATGATATTTTTGAATTATTGAAAATTGTTTCTGGCATCAAAGATCACTTTTTTTTGACTCATAAAACTCGGAAATTTTGTCATTAAATATTTTCTTCGAATTTCAAACTAAAACATTGCGGTTCACTGATTTTAATGAGATAGACAGGTAAGAAAATATCACAAGATTTTTTATTAAATCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>270 252 175 135 49 42 35 15 15 9 3</canonical_bands>
                <polymorphic_bands>270 267 175 135 49 42 35 15 9 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCAGTTTTATGCCAACTGTTT</pcr_primer_p1>
		<pcr_primer_p2>GACAAATTCGGAGTCAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCAGTTTTATGCCAACTGTTTTTGTACTGTATGGAGCCGCATTTGGTTTTGACGTTTTTGGGTTTGTAATTTGGAAAATTAAAGATTGGTAACTTAAAAAAATATTTTCAGTTGGATAAATTGGGTGTCCGCAATTGCTATAACATTTTTCCCATTTCTGGATCCACTGGCTATCACAATGTGCCTTCCAGCTCTGAGGCATCGGATATTTTATAAGCATAAAATTGCTAATTTGACTCCGAATTTGTC</canonical_amplicon>
		<polymorphic_amplicon>GTCAGTTTTATGCCAACTGTTTTTGTACTGTATGGAGCCGCATTTGGTTTTGACGTTTTTGGGTTTGTAATTTGGAAAATTAAAGATTGGTAACTTWAAAAAATATTTTCAGTTGGATAAATTGGGTGTCCGCAATTGCTATAACATTTTTCCCATTTCTGGATCCACTGGCTATCACAATGTGCCTTCCAGCTCTGAGGCATCGGATATTTTATAAGCATAAAATTGCTAATTTGACTCCGAATTTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26131</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>107714</contig_pos>
        <strand>+</strand>
        <context>GTGAAGCCAG[G/T]TGAAGTCGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTCGGGTCAATAGCTGGTCATTAGCAGGCCAGGTGATGTCGTGAAGCCAG</left_flank>
        <right_flank>TGAAGTCGTAAAACTGTCAGGTTGATAGTCAAGGGGGGGGGGTACTGTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCGCATTTATCTCCGGAACCTATGGAATCCTCAATTCTCACTTTATTTATTGATTTTTGTCATTAAAAAATCACCATTTCGTTACCGAATATTTCAATCCATACGGTATCATCTTATCTGTCCTATTGGTAGTTGTACACTGAACCATATGGCTTGCGTAGCCGATATAACAATGTTGGCAGATACTGAATCAAGAAATTATGTGAGAGACTCTTTCGAGAAAGTTTACGGTAGTTTAGAAGGTTTGAACATGAAGACGTTGATTTTTTCGGTGAGCTAACCATTTTGAGCAATTGAGCGAATTCTCTTTTTGCAGGAAGTTTCATCTCGAGGGGTCTATCGATCGTGGTTTGGTACCTTGTTTGTGACTGTGTTAGCATCTTATTCGATCACTTTATATTTTGTACTTGGGTACAAGGTAAGCCAATTTTTAATAAAAATTTCAAGGTCGGGTCAATAGCTGGTCATTAGCAGGCCAGGTGATGTCGTGAAGCCAGGTGAAGTCGTAAAACTGTCAGGTTGATAGTCAAGGGGGGGGGGTACTGTTGTTTTTTGAGATGGCAATAAACCGAAGTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCA</canonical>
            <polymorphic>TTGCGCATTTATCTCCGGAACCTATGGAATCCTCAATTCTCACTTTATTTATTGATTTTTGTCATTAAAAAATCACCATTTCGTTACCGAATATTTCAATCCATACGGTATCATCTTATCTGTCCTATTGGTAGTTGTACACTGAACCATATGGCTTGCGTAGCCGATATAACAATGTTGGCAGATACTGAATCAAGAAATTATGTGAGAGACTCTTTCGAGAAAGTTTACGGTAGTTTAGAAGGTTTGAACATGAAGACGTTGATTTTTTCGGTGAGCTAACCATTTTGAGCAATTGAGCGAATTCTCTTTTTGCAGGAAGTTTCATCTCGAGGGGTCTATCGATCGTGGTTTGGTACCTTGTTTGTGACTGTGTTAGCATCTTATTCGATCACTTTATATTTTGTACTTGGGTACAAGGTAAGCCAATTTTTAATAAAAATTTCAAGGTCGGGTCAATAGCTGGTCATTAGCAGGCCAGGTGATGTCGTGAAGCCAGKTGAAGTCGTAAAACTGTCAGGTTGATAGTCAAGGGGGGGGGGTACTGTTGTTTTTTGAGATGGCAATAAACCGAAGTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGGCCAGTTTGAACCAAGGATTGGATTATAGGAGTGATCGTACGCTTCAACTGCAACGACGGTTGTTTTCGGCGTTGGCAATCCAAACAGCGATTTCAATTTGTGTTAGCTTCATGCCTTGCATTCCGGTTTTGTATGGATCGGCAATTCGGATTGACTTTTTGAGGTGAAAGCTCATTTTAAGGTCTTCAGTTTGATTAAAATTCAAATGGGAGGTTAAAAAAAGAGCCATTCAAAAAAGACTCGAATTAGAAATTCTATTTAAAATTGCATTTTTAAAGCTAATAATTTTCAGCTGGGTCAACAGGATGTCTTCGGTCGGCGTTTCGTTTTTCCCATTTCTTGATTCACTGGCCGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>503 479 18</canonical_bands>
                <polymorphic_bands>521 479</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>503 479 18</canonical_bands>
                <polymorphic_bands>521 479</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>181 174 90 74 69 69 66 66 64 42 33 19 19 10 10 8 6</canonical_bands>
                <polymorphic_bands>184 181 90 74 69 69 66 66 64 42 33 19 19 10 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGTACTTGGGTACAAGGTAAG</pcr_primer_p1>
		<pcr_primer_p2>CCATTATCTGGAAATCCTAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTTGTACTTGGGTACAAGGTAAGCCAATTTTTAATAAAAATTTCAAGGTCGGGTCAATAGCTGGTCATTAGCAGGCCAGGTGATGTCGTGAAGCCAGGTGAAGTCGTAAAACTGTCAGGTTGATAGTCAAGGGGGGGGGGTACTGTTGTTTTTTGAGATGGCAATAAACCGAAGTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGG</canonical_amplicon>
		<polymorphic_amplicon>TTTGTACTTGGGTACAAGGTAAGCCAATTTTTAATAAAAATTTCAAGGTCGGGTCAATAGCTGGTCATTAGCAGGCCAGGTGATGTCGTGAAGCCAGKTGAAGTCGTAAAACTGTCAGGTTGATAGTCAAGGGGGGGGGGTACTGTTGTTTTTTGAGATGGCAATAAACCGAAGTCCTATGAGGATTCTTCAATTTATGTACAATTTTCTAGGTATAAAACTTAGGATTTCCAGATAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26132</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>169600</contig_pos>
        <strand></strand>
        <context>CCTTTAGGAA[T/C]WTTCAGTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAAATGACAGTTGTTACCAATGCAGTCTAATGTAACACAACCTTTAGGAA</left_flank>
        <right_flank>ATTCAGTTTGTAATCACATATCACCCAAAAAACCAGGTTATCGACACCAC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGGAATCACATCGAAAACGAAAATTATCGAAATATCGAATAATGCTAGGCGATTTGCCTGAAATCACATTATATTTATTTTGCTAACAGCAAGCTGGTGCGCCTTCGGCGCTATTCAATTTAGTTTTTTACTGGTTCGTGGTTCTGCTCCTCAATTATTCTTAAAGGATCACGTAAATCTATATTCATTTTTCAAGCTTTTCAAAAGTCGACAGAGTGACACCGGGACCAACAGACGCATCTAGCGTTTTATATATGAAGAAGATATTTTCAAAAACCTACTTTCGTTAAATCTTTGTTTTCTGCAACGTTTGAGCACTTGTTCCAGATGAAAATTTTGACGATGAGCATCAGAGATAAAAGCGCTATCACGCCATGAATTATCTGAAAATCCGAATCAACTACAGGACTACCACAAGGCTTACCATTTCATAGGATAAAAAGTAGGTCAAATGACAGTTGTTACCAATGCAGTCTAATGTAACACAACCTTTAGGAATATTCAGTTTGTAATCACATATCACCCAAAAAACCAGGTTATCGACACCACAATAACTGAATACGCCTAGAGCGATGGCTACATTTGAAATTTTATTTCTATGATTATGATACGAAATTGGTGAAAAAACCGCGAAAATTCGATCCAACGTAATTACAGCTGCTAGGAGACCCCGGATACTGAGAAGATTTACCACTGGCCATGTGATATAGAATATGGTATATAAATATGGGTCTTGGATATTGAAAAATTTCAAGTAAGTAGTTGACAATGTGAGGAGGTCTAAAATATTTTCATTTTAAATGAAATTCAGGATCAATAACATTTCCAAAACTGAGCAAAAATTGAGAAAGAATCGGACATAAAACAGTGTTAAGCCGGAAGACTTTTTCAGTTTTTTGGATCTAAAAGTGGATTAATTAAATTTATTTATTCCATATTTCATCAAATGACTAACATGAAAAGATTGTACAGTAGATAGGAATGAATTAATAAAGATAC</canonical>
            <polymorphic>GTGGAATCACATCGAAAACGAAAATTATCGAAATATCGAATAATGCTAGGCGATTTGCCTGAAATCACATTATATTTATTTTGCTAACAGCAAGCTGGTGCGCCTTCGGCGCTATTCAATTTAGTTTTTTACTGGTTCGTGGTTCTGCTCCTCAATTATTCTTAAAGGATCACGTAAATCTATATTCATTTTTCAAGCTTTTCAAAAGTCGACAGAGTGACACCGGGACCAACAGACGCATCTAGCGTTTTATATATGAAGAAGATATTTTCAAAAACCTACTTTCGTTAAATCTTTGTTTTCTGCAACGTTTGAGCACTTGTTCCAGATGAAAATTTTGACGATGAGCATCAGAGATAAAAGCGCTATCACGCCATGAATTATCTGAAAATCCGAATCAACTACAGGACTACCACAAGGCTTACCATTTCATAGGATAAAAAGTAGGTCAAATGACAGTTGTTACCAATGCAGTCTAATGTAACACAACCTTTAGGAAYATTCAGTTTGTAATCACATATCACCCAAAAAACCAGGTTATCGACACCACAATAACTGAATACGCCTAGAGCGATGGCTACATTTGAAATTTTATTTCTATGATTATGATACGAAATTGGTGAAAAAACCGCGAAAATTCGATCCAACGTAATTACAGCTGCTAGGAGACCCCGGATACTGAGAAGATTTACCACTGGCCATGTGATATAGAATATGGTATATAAATATGGGTCTTGGATATTGAAAAATTTCAAGTAAGTAGTTGACAATGTGAGGAGGTCTAAAATATTTTCATTTTAAATGAAATTCAGGATCAATAACATTTCCAAAACTGAGCAAAAATTGAGAAAGAATCGGACATAAAACAGTGTTAAGCCGGAAGACTTTTTCAGTTTTTTGGATCTAAAAGTGGATTAATTAAATTTATTTATTCCATATTTCATCAAATGACTAACATGAAAAGATTGTACAGTAGATAGGAATGAATTAATAAAGATAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 288 212</canonical_bands>
                <polymorphic_bands>788 212</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCTGAAAATCCGAATCAACTA</pcr_primer_p1>
		<pcr_primer_p2>TTCACCAATTTCGTATCATAATC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TATCTGAAAATCCGAATCAACTACAGGACTACCACAAGGCTTACCATTTCATAGGATAAAAAGTAGGTCAAATGACAGTTGTTACCAATGCAGTCTAATGTAACACAACCTTTAGGAATATTCAGTTTGTAATCACATATCACCCAAAAAACCAGGTTATCGACACCACAATAACTGAATACGCCTAGAGCGATGGCTACATTTGAAATTTTATTTCTATGATTATGATACGAAATTGGTGAA</canonical_amplicon>
		<polymorphic_amplicon>TATCTGAAAATCCGAATCAACTACAGGACTACCACAAGGCTTACCATTTCATAGGATAAAAAGTAGGTCAAATGACAGTTGTTACCAATGCAGTCTAATGTAACACAACCTTTAGGAAYATTCAGTTTGTAATCACATATCACCCAAAAAACCAGGTTATCGACACCACAATAACTGAATACGCCTAGAGCGATGGCTACATTTGAAATTTTATTTCTATGATTATGATACGAAATTGGTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26133</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>169601</contig_pos>
        <strand></strand>
        <context>CTTTAGGAAY[A/T]TTCAGTTTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATGACAGTTGTTACCAATGCAGTCTAATGTAACACAACCTTTAGGAAT</left_flank>
        <right_flank>TTCAGTTTGTAATCACATATCACCCAAAAAACCAGGTTATCGACACCACA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAATCACATCGAAAACGAAAATTATCGAAATATCGAATAATGCTAGGCGATTTGCCTGAAATCACATTATATTTATTTTGCTAACAGCAAGCTGGTGCGCCTTCGGCGCTATTCAATTTAGTTTTTTACTGGTTCGTGGTTCTGCTCCTCAATTATTCTTAAAGGATCACGTAAATCTATATTCATTTTTCAAGCTTTTCAAAAGTCGACAGAGTGACACCGGGACCAACAGACGCATCTAGCGTTTTATATATGAAGAAGATATTTTCAAAAACCTACTTTCGTTAAATCTTTGTTTTCTGCAACGTTTGAGCACTTGTTCCAGATGAAAATTTTGACGATGAGCATCAGAGATAAAAGCGCTATCACGCCATGAATTATCTGAAAATCCGAATCAACTACAGGACTACCACAAGGCTTACCATTTCATAGGATAAAAAGTAGGTCAAATGACAGTTGTTACCAATGCAGTCTAATGTAACACAACCTTTAGGAATATTCAGTTTGTAATCACATATCACCCAAAAAACCAGGTTATCGACACCACAATAACTGAATACGCCTAGAGCGATGGCTACATTTGAAATTTTATTTCTATGATTATGATACGAAATTGGTGAAAAAACCGCGAAAATTCGATCCAACGTAATTACAGCTGCTAGGAGACCCCGGATACTGAGAAGATTTACCACTGGCCATGTGATATAGAATATGGTATATAAATATGGGTCTTGGATATTGAAAAATTTCAAGTAAGTAGTTGACAATGTGAGGAGGTCTAAAATATTTTCATTTTAAATGAAATTCAGGATCAATAACATTTCCAAAACTGAGCAAAAATTGAGAAAGAATCGGACATAAAACAGTGTTAAGCCGGAAGACTTTTTCAGTTTTTTGGATCTAAAAGTGGATTAATTAAATTTATTTATTCCATATTTCATCAAATGACTAACATGAAAAGATTGTACAGTAGATAGGAATGAATTAATAAAGATACG</canonical>
            <polymorphic>TGGAATCACATCGAAAACGAAAATTATCGAAATATCGAATAATGCTAGGCGATTTGCCTGAAATCACATTATATTTATTTTGCTAACAGCAAGCTGGTGCGCCTTCGGCGCTATTCAATTTAGTTTTTTACTGGTTCGTGGTTCTGCTCCTCAATTATTCTTAAAGGATCACGTAAATCTATATTCATTTTTCAAGCTTTTCAAAAGTCGACAGAGTGACACCGGGACCAACAGACGCATCTAGCGTTTTATATATGAAGAAGATATTTTCAAAAACCTACTTTCGTTAAATCTTTGTTTTCTGCAACGTTTGAGCACTTGTTCCAGATGAAAATTTTGACGATGAGCATCAGAGATAAAAGCGCTATCACGCCATGAATTATCTGAAAATCCGAATCAACTACAGGACTACCACAAGGCTTACCATTTCATAGGATAAAAAGTAGGTCAAATGACAGTTGTTACCAATGCAGTCTAATGTAACACAACCTTTAGGAATWTTCAGTTTGTAATCACATATCACCCAAAAAACCAGGTTATCGACACCACAATAACTGAATACGCCTAGAGCGATGGCTACATTTGAAATTTTATTTCTATGATTATGATACGAAATTGGTGAAAAAACCGCGAAAATTCGATCCAACGTAATTACAGCTGCTAGGAGACCCCGGATACTGAGAAGATTTACCACTGGCCATGTGATATAGAATATGGTATATAAATATGGGTCTTGGATATTGAAAAATTTCAAGTAAGTAGTTGACAATGTGAGGAGGTCTAAAATATTTTCATTTTAAATGAAATTCAGGATCAATAACATTTCCAAAACTGAGCAAAAATTGAGAAAGAATCGGACATAAAACAGTGTTAAGCCGGAAGACTTTTTCAGTTTTTTGGATCTAAAAGTGGATTAATTAAATTTATTTATTCCATATTTCATCAAATGACTAACATGAAAAGATTGTACAGTAGATAGGAATGAATTAATAAAGATACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 288 213</canonical_bands>
                <polymorphic_bands>787 213</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCTGAAAATCCGAATCAACTA</pcr_primer_p1>
		<pcr_primer_p2>TTCACCAATTTCGTATCATAATC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TATCTGAAAATCCGAATCAACTACAGGACTACCACAAGGCTTACCATTTCATAGGATAAAAAGTAGGTCAAATGACAGTTGTTACCAATGCAGTCTAATGTAACACAACCTTTAGGAATATTCAGTTTGTAATCACATATCACCCAAAAAACCAGGTTATCGACACCACAATAACTGAATACGCCTAGAGCGATGGCTACATTTGAAATTTTATTTCTATGATTATGATACGAAATTGGTGAA</canonical_amplicon>
		<polymorphic_amplicon>TATCTGAAAATCCGAATCAACTACAGGACTACCACAAGGCTTACCATTTCATAGGATAAAAAGTAGGTCAAATGACAGTTGTTACCAATGCAGTCTAATGTAACACAACCTTTAGGAATWTTCAGTTTGTAATCACATATCACCCAAAAAACCAGGTTATCGACACCACAATAACTGAATACGCCTAGAGCGATGGCTACATTTGAAATTTTATTTCTATGATTATGATACGAAATTGGTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26134</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>175625</contig_pos>
        <strand>+</strand>
        <context>GGAAGCTAAA[A/C]ACCGAAAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCGGAAGTCAGAAGTCGGAAGTATGGGAAATTGTTAATTGGAAGCTAAA</left_flank>
        <right_flank>ACCGAAAATCGGAACTGACCGCATTTGAGATTGGTTGGGAAGAAACCGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTAATGTTATTATAGCAGAAAAAGTGGCAAACACAGAGATCACAATGGCAATGATTCCCATTTTTAGGAAAAAACACTGAAAAATTTCTAAATTTTTGAACAACTTCGGTTTCTGTTTTTCTTTCTTGGAAAATTGGTTAGGAACAAAAACACGATGTAGGAAAAAAAATCGAAATTCTCAAAACAACAAGTTTCGTATTTTTGTTACATGTTCTGTTCTGATGGTTGGTAATGTTTCTTCTTTAAATATTACTCATATGAGTTTCAAAGTACATATTTTTGTTATGAAAAGTTGTATAATTAAATAATAACATATTTTTTAAAAATATTGCTGCAAAAAAACCCCACTCAAGGAGTTGAACTTGTGGGTCCAACGTTAGAGGTGCCACTTTTTTTACCAGCTTAGCTACGGAAGCGGGAGTTCTACCACTGTCCGATGTCACACATGATCGGAAGTCAGAAGTCGGAAGTATGGGAAATTGTTAATTGGAAGCTAAAAACCGAAAATCGGAACTGACCGCATTTGAGATTGGTTGGGAAGAAACCGAATTTCAGATTTTGGTTGGTTCTCTGAAATTTTGGGCTGGTTCCAAGAATAGTTAATTGCAATTTCAAGAAAAACAACCGGAAAACGGAAGATTTATTGTTTCACTCTGTTCATCCTCAATAAACATTCATTTCCATGTTCAACAAAAAACTACAATTTCAGATTTTCAGAAAAAAACAAGATTATTTACAAAAATCTACTGCCAAGCATGATTATTAATGTGACGGTGATGACGATGATTAGATGAAGCTTGACCAGTTGATTTTATCATTGACGAGTTGTTCGCATACGACACTGATACGATATCATTAGTCCGTTTGAGTGCGCGGCGTACTAGCCAACTTTCCAGTGCGTACCCACTCATTTTACAGACCAAAATTAATGAACCAAATTGTGCGGAAAGAGCTGGAAACTTGACAGTAAAACCAGCAGGTACAATGTCAAAAATAATG</canonical>
            <polymorphic>GCTAATGTTATTATAGCAGAAAAAGTGGCAAACACAGAGATCACAATGGCAATGATTCCCATTTTTAGGAAAAAACACTGAAAAATTTCTAAATTTTTGAACAACTTCGGTTTCTGTTTTTCTTTCTTGGAAAATTGGTTAGGAACAAAAACACGATGTAGGAAAAAAAATCGAAATTCTCAAAACAACAAGTTTCGTATTTTTGTTACATGTTCTGTTCTGATGGTTGGTAATGTTTCTTCTTTAAATATTACTCATATGAGTTTCAAAGTACATATTTTTGTTATGAAAAGTTGTATAATTAAATAATAACATATTTTTTAAAAATATTGCTGCAAAAAAACCCCACTCAAGGAGTTGAACTTGTGGGTCCAACGTTAGAGGTGCCACTTTTTTTACCAGCTTAGCTACGGAAGCGGGAGTTCTACCACTGTCCGATGTCACACATGATCGGAAGTCAGAAGTCGGAAGTATGGGAAATTGTTAATTGGAAGCTAAAMACCGAAAATCGGAACTGACCGCATTTGAGATTGGTTGGGAAGAAACCGAATTTCAGATTTTGGTTGGTTCTCTGAAATTTTGGGCTGGTTCCAAGAATAGTTAATTGCAATTTCAAGAAAAACAACCGGAAAACGGAAGATTTATTGTTTCACTCTGTTCATCCTCAATAAACATTCATTTCCATGTTCAACAAAAAACTACAATTTCAGATTTTCAGAAAAAAACAAGATTATTTACAAAAATCTACTGCCAAGCATGATTATTAATGTGACGGTGATGACGATGATTAGATGAAGCTTGACCAGTTGATTTTATCATTGACGAGTTGTTCGCATACGACACTGATACGATATCATTAGTCCGTTTGAGTGCGCGGCGTACTAGCCAACTTTCCAGTGCGTACCCACTCATTTTACAGACCAAAATTAATGAACCAAATTGTGCGGAAAGAGCTGGAAACTTGACAGTAAAACCAGCAGGTACAATGTCAAAAATAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTCTACCACTGTCCGATGT</pcr_primer_p1>
		<pcr_primer_p2>AGGATGAACAGAGTGAAACAATA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGTTCTACCACTGTCCGATGTCACACATGATCGGAAGTCAGAAGTCGGAAGTATGGGAAATTGTTAATTGGAAGCTAAAAACCGAAAATCGGAACTGACCGCATTTGAGATTGGTTGGGAAGAAACCGAATTTCAGATTTTGGTTGGTTCTCTGAAATTTTGGGCTGGTTCCAAGAATAGTTAATTGCAATTTCAAGAAAAACAACCGGAAAACGGAAGATTTATTGTTTCACTCTGTTCATCCT</canonical_amplicon>
		<polymorphic_amplicon>AGTTCTACCACTGTCCGATGTCACACATGATCGGAAGTCAGAAGTCGGAAGTATGGGAAATTGTTAATTGGAAGCTAAAMACCGAAAATCGGAACTGACCGCATTTGAGATTGGTTGGGAAGAAACCGAATTTCAGATTTTGGTTGGTTCTCTGAAATTTTGGGCTGGTTCCAAGAATAGTTAATTGCAATTTCAAGAAAAACAACCGGAAAACGGAAGATTTATTGTTTCACTCTGTTCATCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26135</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>226557</contig_pos>
        <strand>+</strand>
        <context>AGAAAGAAAA[A/G]AAGATAGACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATACTTTTCTAGAAAGAAGTTTTTCTGAGATGTAACGAGAAGAAAGAAAA</left_flank>
        <right_flank>AAGATAGACTGTTTTTTTGAACTTAAGAATACAAGTACAAAGTTCAGAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAGGAATTCAGAAACTCCCTCAAAAAAAATTGTACCCCCGAATCACAAGCGTTGTACCCCTAAATGAAATGAGTTGTACCCCAGAATCATTGGTAGTTTGTACCCCCGAATCGTTGTACCCCCGAATTTTTGTACCCACGAATTTTTTACCCCCGAATCATCAATTTTGTACCCCTAAATCAGTTGTACCCCCTTGTACCCCCGAATCATTGTACCCCCCGAATTTTTGGCCCTCGGAAATTGGTAACTTTGATAGGACTGAAACTTTTACCTCCGGTATATGAAAATCAAAAAACAATTCATTATTGCTATCAGAACTCCACAAACCACACCGATTGATGATACGATGAATGGAAGAAGCATTTCTCAAAAATTATGAATGATCTGAACAATGAATGTGAATATATGTATCAACGTTTAGAAATTATTTTCGCTCGAATGAATTCTATACTTTTCTAGAAAGAAGTTTTTCTGAGATGTAACGAGAAGAAAGAAAAAAAGATAGACTGTTTTTTTGAACTTAAGAATACAAGTACAAAGTTCAGAATTAGGAGAATTTCAGAATAATCAAAGTCTGAGATGTAGAATTTTCGGTTTATGTTTTGTTAGTGGTCTATGAAACGAGACAACGGAGCTGTTGTTTTCTCGTCACATAAGCTGCACAAAAATTTAATCAAAGTGAAATAATATTATTGTCGCCAAAGACAATATTTCAAATTCTAGGTTAAACCACTATTTTTCTGAATTTCAATAAGTCACACTTATCAAACCATTCGAAAAAGAAACGGCTACTTGGAGCCTTCTTATTTCATTGAAGATCAATAATCGGGTCATTTTATTAGTGGAGTCGTTTTATTTCTCAAAAGATTGTTTATTTCCTAAATTCCAGCCAAAAGATCTTTATCTTTCGGCTGACAGTGTTAGTCCAGTATGACCAAAAACTGACAATCCTGACAATGTGAAGGAGCCAAGTGTATATGAATGTTTGGATTGTATTA</canonical>
            <polymorphic>TTCAGGAATTCAGAAACTCCCTCAAAAAAAATTGTACCCCCGAATCACAAGCGTTGTACCCCTAAATGAAATGAGTTGTACCCCAGAATCATTGGTAGTTTGTACCCCCGAATCGTTGTACCCCCGAATTTTTGTACCCACGAATTTTTTACCCCCGAATCATCAATTTTGTACCCCTAAATCAGTTGTACCCCCTTGTACCCCCGAATCATTGTACCCCCCGAATTTTTGGCCCTCGGAAATTGGTAACTTTGATAGGACTGAAACTTTTACCTCCGGTATATGAAAATCAAAAAACAATTCATTATTGCTATCAGAACTCCACAAACCACACCGATTGATGATACGATGAATGGAAGAAGCATTTCTCAAAAATTATGAATGATCTGAACAATGAATGTGAATATATGTATCAACGTTTAGAAATTATTTTCGCTCGAATGAATTCTATACTTTTCTAGAAAGAAGTTTTTCTGAGATGTAACGAGAAGAAAGAAAARAAGATAGACTGTTTTTTTGAACTTAAGAATACAAGTACAAAGTTCAGAATTAGGAGAATTTCAGAATAATCAAAGTCTGAGATGTAGAATTTTCGGTTTATGTTTTGTTAGTGGTCTATGAAACGAGACAACGGAGCTGTTGTTTTCTCGTCACATAAGCTGCACAAAAATTTAATCAAAGTGAAATAATATTATTGTCGCCAAAGACAATATTTCAAATTCTAGGTTAAACCACTATTTTTCTGAATTTCAATAAGTCACACTTATCAAACCATTCGAAAAAGAAACGGCTACTTGGAGCCTTCTTATTTCATTGAAGATCAATAATCGGGTCATTTTATTAGTGGAGTCGTTTTATTTCTCAAAAGATTGTTTATTTCCTAAATTCCAGCCAAAAGATCTTTATCTTTCGGCTGACAGTGTTAGTCCAGTATGACCAAAAACTGACAATCCTGACAATGTGAAGGAGCCAAGTGTATATGAATGTTTGGATTGTATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGAAGCATTTCTCAAAAATTA</pcr_primer_p1>
		<pcr_primer_p2>AAACATAAACCGAAAATTCTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGAAGCATTTCTCAAAAATTATGAATGATCTGAACAATGAATGTGAATATATGTATCAACGTTTAGAAATTATTTTCGCTCGAATGAATTCTATACTTTTCTAGAAAGAAGTTTTTCTGAGATGTAACGAGAAGAAAGAAAAAAAGATAGACTGTTTTTTTGAACTTAAGAATACAAGTACAAAGTTCAGAATTAGGAGAATTTCAGAATAATCAAAGTCTGAGATGTAGAATTTTCGGTTTATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAAGAAGCATTTCTCAAAAATTATGAATGATCTGAACAATGAATGTGAATATATGTATCAACGTTTAGAAATTATTTTCGCTCGAATGAATTCTATACTTTTCTAGAAAGAAGTTTTTCTGAGATGTAACGAGAAGAAAGAAAARAAGATAGACTGTTTTTTTGAACTTAAGAATACAAGTACAAAGTTCAGAATTAGGAGAATTTCAGAATAATCAAAGTCTGAGATGTAGAATTTTCGGTTTATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26136</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>300760</contig_pos>
        <strand>+</strand>
        <context>CTATGAGAGA[A/T]AWMAAATATC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAACGCCTTCTATGTGATTGTTTATGTTGACTCTCGGTTCCTATGAGAGA</left_flank>
        <right_flank>ATCAAATATCTAGAATATTCCCATTTTTCAAGAACCTGAAATTTCGGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTGTAGTTAGAGTATGCATTATACCGTCAAGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTATCATCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGTGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAGAAGTCTTGAATGAACCTTAACTTATCGTAGCCACTCTAATAGAATCTTCTGCTTTGAGCCATTTTTTTTCGGTTACAGTAAGAGATATCGAAAAGTGGTTAACTGACAAATTGTTTCAAAAGTTACAATAAACATTTTATCTGTTGACCAGTGTTTGATATCTTTCACGGGAGATGAGATGTGTGAACTCAAAGCTGATGGCTTGGAACGCCTTCTATGTGATTGTTTATGTTGACTCTCGGTTCCTATGAGAGATATCAAATATCTAGAATATTCCCATTTTTCAAGAACCTGAAATTTCGGAATTATGCCAAATACTCTGAATTCTTGTCATTAATTACAGTTTCAATTGAGAACCATTATCTAATTTTGAAAAAAAAAGAAATTCTGAAAAATTGTTTACCGTACCGTATCCTCTCTGTTAGAATGCTCTTCAAACCGTCGACTTTGAGCCAATTCATCTCGTTTTATGTAAAAGATATCAAAAAGTGGTAAACTGATAAAATGTTTATCATAATATCAAAAACATTTTGTTAGTTGACAATTTTTTGACATCTTTAACAGGAATTGAGATAAATCAGGTGAAAGTTAGAGGGTCATTCTGAGCTACGCGGCAGCACCCTCCTCCCCTCAACTTTGAGCCTATTTATCTCATATACTGTGAAAAATACCAAAAAATGGTTAACTGATAAAATGTAAAAAAATTATGATAAACATTATATCAGTTGACCACTTTTTGATATATTAAATAGGAAC</canonical>
            <polymorphic>TTTTTTGTAGTTAGAGTATGCATTATACCGTCAAGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTATCATCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGTGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAGAAGTCTTGAATGAACCTTAACTTATCGTAGCCACTCTAATAGAATCTTCTGCTTTGAGCCATTTTTTTTCGGTTACAGTAAGAGATATCGAAAAGTGGTTAACTGACAAATTGTTTCAAAAGTTACAATAAACATTTTATCTGTTGACCAGTGTTTGATATCTTTCACGGGAGATGAGATGTGTGAACTCAAAGCTGATGGCTTGGAACGCCTTCTATGTGATTGTTTATGTTGACTCTCGGTTCCTATGAGAGAWATCAAATATCTAGAATATTCCCATTTTTCAAGAACCTGAAATTTCGGAATTATGCCAAATACTCTGAATTCTTGTCATTAATTACAGTTTCAATTGAGAACCATTATCTAATTTTGAAAAAAAAAGAAATTCTGAAAAATTGTTTACCGTACCGTATCCTCTCTGTTAGAATGCTCTTCAAACCGTCGACTTTGAGCCAATTCATCTCGTTTTATGTAAAAGATATCAAAAAGTGGTAAACTGATAAAATGTTTATCATAATATCAAAAACATTTTGTTAGTTGACAATTTTTTGACATCTTTAACAGGAATTGAGATAAATCAGGTGAAAGTTAGAGGGTCATTCTGAGCTACGCGGCAGCACCCTCCTCCCCTCAACTTTGAGCCTATTTATCTCATATACTGTGAAAAATACCAAAAAATGGTTAACTGATAAAATGTAAAAAAATTATGATAAACATTATATCAGTTGACCACTTTTTGATATATTAAATAGGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>330 276 224 97 73</canonical_bands>
                <polymorphic_bands>330 321 276 73</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCTTAACTTATCGTAGCCACTC</pcr_primer_p1>
		<pcr_primer_p2>AGAATTCAGAGTATTTGGCATAA</pcr_primer_p2>
		<pcr_amplicon_size>315</pcr_amplicon_size>
		<canonical_amplicon>ACCTTAACTTATCGTAGCCACTCTAATAGAATCTTCTGCTTTGAGCCATTTTTTTTCGGTTACAGTAAGAGATATCGAAAAGTGGTTAACTGACAAATTGTTTCAAAAGTTACAATAAACATTTTATCTGTTGACCAGTGTTTGATATCTTTCACGGGAGATGAGATGTGTGAACTCAAAGCTGATGGCTTGGAACGCCTTCTATGTGATTGTTTATGTTGACTCTCGGTTCCTATGAGAGATATCAAATATCTAGAATATTCCCATTTTTCAAGAACCTGAAATTTCGGAATTATGCCAAATACTCTGAATTCT</canonical_amplicon>
		<polymorphic_amplicon>ACCTTAACTTATCGTAGCCACTCTAATAGAATCTTCTGCTTTGAGCCATTTTTTTTCGGTTACAGTAAGAGATATCGAAAAGTGGTTAACTGACAAATTGTTTCAAAAGTTACAATAAACATTTTATCTGTTGACCAGTGTTTGATATCTTTCACGGGAGATGAGATGTGTGAACTCAAAGCTGATGGCTTGGAACGCCTTCTATGTGATTGTTTATGTTGACTCTCGGTTCCTATGAGAGAWATCAAATATCTAGAATATTCCCATTTTTCAAGAACCTGAAATTTCGGAATTATGCCAAATACTCTGAATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26137</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>300762</contig_pos>
        <strand>+</strand>
        <context>ATGAGAGAWA[A/T]MAAATATCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACGCCTTCTATGTGATTGTTTATGTTGACTCTCGGTTCCTATGAGAGATA</left_flank>
        <right_flank>CAAATATCTAGAATATTCCCATTTTTCAAGAACCTGAAATTTCGGAATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGTAGTTAGAGTATGCATTATACCGTCAAGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTATCATCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGTGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAGAAGTCTTGAATGAACCTTAACTTATCGTAGCCACTCTAATAGAATCTTCTGCTTTGAGCCATTTTTTTTCGGTTACAGTAAGAGATATCGAAAAGTGGTTAACTGACAAATTGTTTCAAAAGTTACAATAAACATTTTATCTGTTGACCAGTGTTTGATATCTTTCACGGGAGATGAGATGTGTGAACTCAAAGCTGATGGCTTGGAACGCCTTCTATGTGATTGTTTATGTTGACTCTCGGTTCCTATGAGAGATATCAAATATCTAGAATATTCCCATTTTTCAAGAACCTGAAATTTCGGAATTATGCCAAATACTCTGAATTCTTGTCATTAATTACAGTTTCAATTGAGAACCATTATCTAATTTTGAAAAAAAAAGAAATTCTGAAAAATTGTTTACCGTACCGTATCCTCTCTGTTAGAATGCTCTTCAAACCGTCGACTTTGAGCCAATTCATCTCGTTTTATGTAAAAGATATCAAAAAGTGGTAAACTGATAAAATGTTTATCATAATATCAAAAACATTTTGTTAGTTGACAATTTTTTGACATCTTTAACAGGAATTGAGATAAATCAGGTGAAAGTTAGAGGGTCATTCTGAGCTACGCGGCAGCACCCTCCTCCCCTCAACTTTGAGCCTATTTATCTCATATACTGTGAAAAATACCAAAAAATGGTTAACTGATAAAATGTAAAAAAATTATGATAAACATTATATCAGTTGACCACTTTTTGATATATTAAATAGGAACCG</canonical>
            <polymorphic>TTTTGTAGTTAGAGTATGCATTATACCGTCAAGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTATCATCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGTGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAGAAGTCTTGAATGAACCTTAACTTATCGTAGCCACTCTAATAGAATCTTCTGCTTTGAGCCATTTTTTTTCGGTTACAGTAAGAGATATCGAAAAGTGGTTAACTGACAAATTGTTTCAAAAGTTACAATAAACATTTTATCTGTTGACCAGTGTTTGATATCTTTCACGGGAGATGAGATGTGTGAACTCAAAGCTGATGGCTTGGAACGCCTTCTATGTGATTGTTTATGTTGACTCTCGGTTCCTATGAGAGATAWCAAATATCTAGAATATTCCCATTTTTCAAGAACCTGAAATTTCGGAATTATGCCAAATACTCTGAATTCTTGTCATTAATTACAGTTTCAATTGAGAACCATTATCTAATTTTGAAAAAAAAAGAAATTCTGAAAAATTGTTTACCGTACCGTATCCTCTCTGTTAGAATGCTCTTCAAACCGTCGACTTTGAGCCAATTCATCTCGTTTTATGTAAAAGATATCAAAAAGTGGTAAACTGATAAAATGTTTATCATAATATCAAAAACATTTTGTTAGTTGACAATTTTTTGACATCTTTAACAGGAATTGAGATAAATCAGGTGAAAGTTAGAGGGTCATTCTGAGCTACGCGGCAGCACCCTCCTCCCCTCAACTTTGAGCCTATTTATCTCATATACTGTGAAAAATACCAAAAAATGGTTAACTGATAAAATGTAAAAAAATTATGATAAACATTATATCAGTTGACCACTTTTTGATATATTAAATAGGAACCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>328 278 224 97 73</canonical_bands>
                <polymorphic_bands>328 321 278 73</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCTTAACTTATCGTAGCCACTC</pcr_primer_p1>
		<pcr_primer_p2>AGAATTCAGAGTATTTGGCATAA</pcr_primer_p2>
		<pcr_amplicon_size>315</pcr_amplicon_size>
		<canonical_amplicon>ACCTTAACTTATCGTAGCCACTCTAATAGAATCTTCTGCTTTGAGCCATTTTTTTTCGGTTACAGTAAGAGATATCGAAAAGTGGTTAACTGACAAATTGTTTCAAAAGTTACAATAAACATTTTATCTGTTGACCAGTGTTTGATATCTTTCACGGGAGATGAGATGTGTGAACTCAAAGCTGATGGCTTGGAACGCCTTCTATGTGATTGTTTATGTTGACTCTCGGTTCCTATGAGAGATATCAAATATCTAGAATATTCCCATTTTTCAAGAACCTGAAATTTCGGAATTATGCCAAATACTCTGAATTCT</canonical_amplicon>
		<polymorphic_amplicon>ACCTTAACTTATCGTAGCCACTCTAATAGAATCTTCTGCTTTGAGCCATTTTTTTTCGGTTACAGTAAGAGATATCGAAAAGTGGTTAACTGACAAATTGTTTCAAAAGTTACAATAAACATTTTATCTGTTGACCAGTGTTTGATATCTTTCACGGGAGATGAGATGTGTGAACTCAAAGCTGATGGCTTGGAACGCCTTCTATGTGATTGTTTATGTTGACTCTCGGTTCCTATGAGAGATAWCAAATATCTAGAATATTCCCATTTTTCAAGAACCTGAAATTTCGGAATTATGCCAAATACTCTGAATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26138</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>300763</contig_pos>
        <strand>+</strand>
        <context>TGAGAGAWAW[A/C]AAATATCTAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGCCTTCTATGTGATTGTTTATGTTGACTCTCGGTTCCTATGAGAGATAT</left_flank>
        <right_flank>AAATATCTAGAATATTCCCATTTTTCAAGAACCTGAAATTTCGGAATTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGTAGTTAGAGTATGCATTATACCGTCAAGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTATCATCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGTGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAGAAGTCTTGAATGAACCTTAACTTATCGTAGCCACTCTAATAGAATCTTCTGCTTTGAGCCATTTTTTTTCGGTTACAGTAAGAGATATCGAAAAGTGGTTAACTGACAAATTGTTTCAAAAGTTACAATAAACATTTTATCTGTTGACCAGTGTTTGATATCTTTCACGGGAGATGAGATGTGTGAACTCAAAGCTGATGGCTTGGAACGCCTTCTATGTGATTGTTTATGTTGACTCTCGGTTCCTATGAGAGATATCAAATATCTAGAATATTCCCATTTTTCAAGAACCTGAAATTTCGGAATTATGCCAAATACTCTGAATTCTTGTCATTAATTACAGTTTCAATTGAGAACCATTATCTAATTTTGAAAAAAAAAGAAATTCTGAAAAATTGTTTACCGTACCGTATCCTCTCTGTTAGAATGCTCTTCAAACCGTCGACTTTGAGCCAATTCATCTCGTTTTATGTAAAAGATATCAAAAAGTGGTAAACTGATAAAATGTTTATCATAATATCAAAAACATTTTGTTAGTTGACAATTTTTTGACATCTTTAACAGGAATTGAGATAAATCAGGTGAAAGTTAGAGGGTCATTCTGAGCTACGCGGCAGCACCCTCCTCCCCTCAACTTTGAGCCTATTTATCTCATATACTGTGAAAAATACCAAAAAATGGTTAACTGATAAAATGTAAAAAAATTATGATAAACATTATATCAGTTGACCACTTTTTGATATATTAAATAGGAACCGA</canonical>
            <polymorphic>TTTGTAGTTAGAGTATGCATTATACCGTCAAGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTATCATCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGTGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAGAAGTCTTGAATGAACCTTAACTTATCGTAGCCACTCTAATAGAATCTTCTGCTTTGAGCCATTTTTTTTCGGTTACAGTAAGAGATATCGAAAAGTGGTTAACTGACAAATTGTTTCAAAAGTTACAATAAACATTTTATCTGTTGACCAGTGTTTGATATCTTTCACGGGAGATGAGATGTGTGAACTCAAAGCTGATGGCTTGGAACGCCTTCTATGTGATTGTTTATGTTGACTCTCGGTTCCTATGAGAGATATMAAATATCTAGAATATTCCCATTTTTCAAGAACCTGAAATTTCGGAATTATGCCAAATACTCTGAATTCTTGTCATTAATTACAGTTTCAATTGAGAACCATTATCTAATTTTGAAAAAAAAAGAAATTCTGAAAAATTGTTTACCGTACCGTATCCTCTCTGTTAGAATGCTCTTCAAACCGTCGACTTTGAGCCAATTCATCTCGTTTTATGTAAAAGATATCAAAAAGTGGTAAACTGATAAAATGTTTATCATAATATCAAAAACATTTTGTTAGTTGACAATTTTTTGACATCTTTAACAGGAATTGAGATAAATCAGGTGAAAGTTAGAGGGTCATTCTGAGCTACGCGGCAGCACCCTCCTCCCCTCAACTTTGAGCCTATTTATCTCATATACTGTGAAAAATACCAAAAAATGGTTAACTGATAAAATGTAAAAAAATTATGATAAACATTATATCAGTTGACCACTTTTTGATATATTAAATAGGAACCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>327 279 224 97 73</canonical_bands>
                <polymorphic_bands>327 321 279 73</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCTTAACTTATCGTAGCCACTC</pcr_primer_p1>
		<pcr_primer_p2>AGAATTCAGAGTATTTGGCATAA</pcr_primer_p2>
		<pcr_amplicon_size>315</pcr_amplicon_size>
		<canonical_amplicon>ACCTTAACTTATCGTAGCCACTCTAATAGAATCTTCTGCTTTGAGCCATTTTTTTTCGGTTACAGTAAGAGATATCGAAAAGTGGTTAACTGACAAATTGTTTCAAAAGTTACAATAAACATTTTATCTGTTGACCAGTGTTTGATATCTTTCACGGGAGATGAGATGTGTGAACTCAAAGCTGATGGCTTGGAACGCCTTCTATGTGATTGTTTATGTTGACTCTCGGTTCCTATGAGAGATATCAAATATCTAGAATATTCCCATTTTTCAAGAACCTGAAATTTCGGAATTATGCCAAATACTCTGAATTCT</canonical_amplicon>
		<polymorphic_amplicon>ACCTTAACTTATCGTAGCCACTCTAATAGAATCTTCTGCTTTGAGCCATTTTTTTTCGGTTACAGTAAGAGATATCGAAAAGTGGTTAACTGACAAATTGTTTCAAAAGTTACAATAAACATTTTATCTGTTGACCAGTGTTTGATATCTTTCACGGGAGATGAGATGTGTGAACTCAAAGCTGATGGCTTGGAACGCCTTCTATGTGATTGTTTATGTTGACTCTCGGTTCCTATGAGAGATATMAAATATCTAGAATATTCCCATTTTTCAAGAACCTGAAATTTCGGAATTATGCCAAATACTCTGAATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26139</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>312248</contig_pos>
        <strand>+</strand>
        <context>AGAGTTCGGT[C/T]AGTACCAGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTGGGATCTGTGTTTAGTGGCCTATATTTTCAGCTCTGTAGAGTTCGGT</left_flank>
        <right_flank>AGTACCAGCACTACCATAACCTGGTAAAAACGGTGGTGGCCTAGAATCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGGAACTGAGATACATGAGCTCAAAGTTGGCGGTTTGGAGGACGGCATTGTTTAGGGTACATTTTGAGTTGTTAACCCCTTTTAGTGTTAACGGTAGGTATCTCGGCTACTCTTGGGAAGTATTGAAGATTTCAAAAAAAGTTTGGTTCTTTTGAAAATGACCTATTTTAACAATCTCAAAACATTTTCTCAATTAGTCCACTTTCAATATTCCAAAATTTTCAAAGTTTACCACTTTCGAAATCTGTTCCTCCAACCATTCCCTATTTCTTTTCCTATTCATTTTCCCCTCTTTTCTCAATAATAAACATGACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAACACAACTTTTTAGATGTTGTATAGTGGGATCTGTGTTTAGTGGCCTATATTTTCAGCTCTGTAGAGTTCGGTCAGTACCAGCACTACCATAACCTGGTAAAAACGGTGGTGGCCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGATTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGGAAAAAAGCGAAATCGCATGTGCCAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAGGCAAGCCTTTTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAAGAATCTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTATATAGCCTAGATTCCAGAAAACTCAGCTTCCCCTTGGACCAAAGACCTCGATGTTCCTCTTCCAATTCTCCATCGTTTCTCTTCACTTTTCTTTACTGCTTTGCTA</canonical>
            <polymorphic>ATAGGAACTGAGATACATGAGCTCAAAGTTGGCGGTTTGGAGGACGGCATTGTTTAGGGTACATTTTGAGTTGTTAACCCCTTTTAGTGTTAACGGTAGGTATCTCGGCTACTCTTGGGAAGTATTGAAGATTTCAAAAAAAGTTTGGTTCTTTTGAAAATGACCTATTTTAACAATCTCAAAACATTTTCTCAATTAGTCCACTTTCAATATTCCAAAATTTTCAAAGTTTACCACTTTCGAAATCTGTTCCTCCAACCATTCCCTATTTCTTTTCCTATTCATTTTCCCCTCTTTTCTCAATAATAAACATGACATTTCCTGCCCCACCACTCAACCCGGCTTTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAACACAACTTTTTAGATGTTGTATAGTGGGATCTGTGTTTAGTGGCCTATATTTTCAGCTCTGTAGAGTTCGGTYAGTACCAGCACTACCATAACCTGGTAAAAACGGTGGTGGCCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGATTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGGAAAAAAGCGAAATCGCATGTGCCAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAGGCAAGCCTTTTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAAGAATCTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTATATAGCCTAGATTCCAGAAAACTCAGCTTCCCCTTGGACCAAAGACCTCGATGTTCCTCTTCCAATTCTCCATCGTTTCTCTTCACTTTTCTTTACTGCTTTGCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCCAATCCTTTTATAGCTC</pcr_primer_p1>
		<pcr_primer_p2>CCAAGTTTTCTAGGCTCTTACA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCCAATCCTTTTATAGCTCCCACAACAACACAACTTTTTAGATGTTGTATAGTGGGATCTGTGTTTAGTGGCCTATATTTTCAGCTCTGTAGAGTTCGGTCAGTACCAGCACTACCATAACCTGGTAAAAACGGTGGTGGCCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGATTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGG</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCCAATCCTTTTATAGCTCCCACAACAACACAACTTTTTAGATGTTGTATAGTGGGATCTGTGTTTAGTGGCCTATATTTTCAGCTCTGTAGAGTTCGGTYAGTACCAGCACTACCATAACCTGGTAAAAACGGTGGTGGCCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGATTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26140</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>312592</contig_pos>
        <strand>+</strand>
        <context>CTGACATAAA[C/G]AATCTATTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTAGGCAAGCCTTTTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAA</left_flank>
        <right_flank>AATCTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTA</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAACACAACTTTTTAGATGTTGTATAGTGGGATCTGTGTTTAGTGGCCTATATTTTCAGCTCTGTAGAGTTCGGTCAGTACCAGCACTACCATAACCTGGTAAAAACGGTGGTGGCCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGATTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGGAAAAAAGCGAAATCGCATGTGCCAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAGGCAAGCCTTTTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAAGAATCTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTATATAGCCTAGATTCCAGAAAACTCAGCTTCCCCTTGGACCAAAGACCTCGATGTTCCTCTTCCAATTCTCCATCGTTTCTCTTCACTTTTCTTTACTGCTTTGCTATCATCTGACAATCAGTGTCGCGGGGCACATACAGAGTGAGACCCCAACACCATACATGTACACACAAACGCCGCCTTATCAATCAATCTGCATAACTAGATCACTCCCCCTCTCTCCCTTCTCTTTCGATACAGCGGTCTTTCTTCCTCCTCCTGCTTGTGCTGCCTACCAACTAACCAAACGATAATGGCCTTTTTTTCTGTATTGAAGTTTTTCACGTTTTTTTTCTGGAAGTTTTGACACTGGACCATCAGCGATTTGCAGGATTTTTTCTAATTGTAAGGCTTGGAGGCCTTCGGTATTGGTTTCTGGCAGAGCTCTTGAAAACTAAAAAATTTAGTAAA</canonical>
            <polymorphic>TTTACCTTTCCGACGTTTTGGTGACATATTCAAACGGGGCGAGAGCCCATTGTTTTCCAATCCTTTTATAGCTCCCACAACAACACAACTTTTTAGATGTTGTATAGTGGGATCTGTGTTTAGTGGCCTATATTTTCAGCTCTGTAGAGTTCGGTCAGTACCAGCACTACCATAACCTGGTAAAAACGGTGGTGGCCTAGAATCCAAATTAAGGAAATTCAGGCCAACTTCCCCTGACCAAGATTTATTCTCTCTGAACTACCGTATACCATAAGAATAGTGTAAGAGCCTAGAAAACTTGGAAAAAAGCGAAATCGCATGTGCCAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAGGCAAGCCTTTTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAASAATCTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTATATAGCCTAGATTCCAGAAAACTCAGCTTCCCCTTGGACCAAAGACCTCGATGTTCCTCTTCCAATTCTCCATCGTTTCTCTTCACTTTTCTTTACTGCTTTGCTATCATCTGACAATCAGTGTCGCGGGGCACATACAGAGTGAGACCCCAACACCATACATGTACACACAAACGCCGCCTTATCAATCAATCTGCATAACTAGATCACTCCCCCTCTCTCCCTTCTCTTTCGATACAGCGGTCTTTCTTCCTCCTCCTGCTTGTGCTGCCTACCAACTAACCAAACGATAATGGCCTTTTTTTCTGTATTGAAGTTTTTCACGTTTTTTTTCTGGAAGTTTTGACACTGGACCATCAGCGATTTGCAGGATTTTTTCTAATTGTAAGGCTTGGAGGCCTTCGGTATTGGTTTCTGGCAGAGCTCTTGAAAACTAAAAAATTTAGTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>440 300 200 60</canonical_bands>
                <polymorphic_bands>440 360 200</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>440 300 200 60</canonical_bands>
                <polymorphic_bands>440 360 200</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAGGACCTCGTAGTAAGAAC</pcr_primer_p1>
		<pcr_primer_p2>GAGTTTTCTGGAATCTAGGCTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAGGCAAGCCTTTTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAAGAATCTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTATATAGCCTAGATTCCAGAAAACTC</canonical_amplicon>
		<polymorphic_amplicon>CAGAGGACCTCGTAGTAAGAACCTACTAGTGGGCTCAAATTCCAAACTTGAAATAGTCTCTGACTACCCAGAAAAACACCTATGGACAAATTCGAATGACCAAGAAAACCTAAATTTTAGGTAAATTAGGCAAGCCTTTTTAGTATTTTCTTTCGGGTCCAAGGGCTGACATAAASAATCTATTTCGAAAATACCTGTACCATAATCCAGGATAGTATTCACCCTATATAGCCTAGATTCCAGAAAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26141</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>313314</contig_pos>
        <strand></strand>
        <context>GTTATATAAC[C/A]GACCGGAAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTCTCTGTTTTAGTACCCAACAGCATAGTTTTATGTACCAGTTATATAAC</left_flank>
        <right_flank>GACCGGAAACTCTATGCAATGTTTCATTGGCTTTTCCGTTTCCGCTTGTT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACGCCGCCTTATCAATCAATCTGCATAACTAGATCACTCCCCCTCTCTCCCTTCTCTTTCGATACAGCGGTCTTTCTTCCTCCTCCTGCTTGTGCTGCCTACCAACTAACCAAACGATAATGGCCTTTTTTTCTGTATTGAAGTTTTTCACGTTTTTTTTCTGGAAGTTTTGACACTGGACCATCAGCGATTTGCAGGATTTTTTCTAATTGTAAGGCTTGGAGGCCTTCGGTATTGGTTTCTGGCAGAGCTCTTGAAAACTAAAAAATTTAGTAAATTTCAAATTCAACATTTTGTCAGTTTTTTTTTTCGAGATGGCTTCTTGAAGCTAGGACGCTAATTGTAAGAAACTAGACCTTCTTGTAACTGCTTCTCTCGGTCCTCTCTCGAAGAACCCCAACTGTTACCGTATACCTTGCCAACCATCAATCCACGTCATTCTTTTCTTTTCTCTGTTTTAGTACCCAACAGCATAGTTTTATGTACCAGTTATATAACCGACCGGAAACTCTATGCAATGTTTCATTGGCTTTTCCGTTTCCGCTTGTTCGATGGCTTTTTTTGGTTGGCTATTATTTTGCAAAATCACAGAGATATGAAATATGTTGGATTTTGAAATTTCTAGATTCTCTGAGATTCTGAAATTTAGGATTCTGAAATTCAAGATTTTGAGCTACTCACCATATTTTTGTATACCCAAAAAATACCAAAAATCTTGTTGTACCTGTTCTTCCTATTGACATTTTGGCTTTTTGTCTTCCCCTACCTCCCAAAAAATTTCCCTCTGTTCTTCTTCTTTTCCTCCTTATTTTTATTGGGCTCCTTTGCGAATTTCCCCTATTTCCTTTTTCGAAGAAAAAAAACCTTCTGCATTTTATTTCAACTCGGTTTTTAATCGAAAATGACATGATAATTAGTGCACACACACACACACACACACACAAACAAACACAAATTACACATAATTATAGGTGCTAAAAAGCTTTTAGTTAGGGAAAA</canonical>
            <polymorphic>AACGCCGCCTTATCAATCAATCTGCATAACTAGATCACTCCCCCTCTCTCCCTTCTCTTTCGATACAGCGGTCTTTCTTCCTCCTCCTGCTTGTGCTGCCTACCAACTAACCAAACGATAATGGCCTTTTTTTCTGTATTGAAGTTTTTCACGTTTTTTTTCTGGAAGTTTTGACACTGGACCATCAGCGATTTGCAGGATTTTTTCTAATTGTAAGGCTTGGAGGCCTTCGGTATTGGTTTCTGGCAGAGCTCTTGAAAACTAAAAAATTTAGTAAATTTCAAATTCAACATTTTGTCAGTTTTTTTTTTCGAGATGGCTTCTTGAAGCTAGGACGCTAATTGTAAGAAACTAGACCTTCTTGTAACTGCTTCTCTCGGTCCTCTCTCGAAGAACCCCAACTGTTACCGTATACCTTGCCAACCATCAATCCACGTCATTCTTTTCTTTTCTCTGTTTTAGTACCCAACAGCATAGTTTTATGTACCAGTTATATAACMGACCGGAAACTCTATGCAATGTTTCATTGGCTTTTCCGTTTCCGCTTGTTCGATGGCTTTTTTTGGTTGGCTATTATTTTGCAAAATCACAGAGATATGAAATATGTTGGATTTTGAAATTTCTAGATTCTCTGAGATTCTGAAATTTAGGATTCTGAAATTCAAGATTTTGAGCTACTCACCATATTTTTGTATACCCAAAAAATACCAAAAATCTTGTTGTACCTGTTCTTCCTATTGACATTTTGGCTTTTTGTCTTCCCCTACCTCCCAAAAAATTTCCCTCTGTTCTTCTTCTTTTCCTCCTTATTTTTATTGGGCTCCTTTGCGAATTTCCCCTATTTCCTTTTTCGAAGAAAAAAAACCTTCTGCATTTTATTTCAACTCGGTTTTTAATCGAAAATGACATGATAATTAGTGCACACACACACACACACACACACAAACAAACACAAATTACACATAATTATAGGTGCTAAAAAGCTTTTAGTTAGGGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGACGCTAATTGTAAGAAACTA</pcr_primer_p1>
		<pcr_primer_p2>CAAAATAATAGCCAACCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGACGCTAATTGTAAGAAACTAGACCTTCTTGTAACTGCTTCTCTCGGTCCTCTCTCGAAGAACCCCAACTGTTACCGTATACCTTGCCAACCATCAATCCACGTCATTCTTTTCTTTTCTCTGTTTTAGTACCCAACAGCATAGTTTTATGTACCAGTTATATAACCGACCGGAAACTCTATGCAATGTTTCATTGGCTTTTCCGTTTCCGCTTGTTCGATGGCTTTTTTTGGTTGGCTATTATTTTG</canonical_amplicon>
		<polymorphic_amplicon>AGGACGCTAATTGTAAGAAACTAGACCTTCTTGTAACTGCTTCTCTCGGTCCTCTCTCGAAGAACCCCAACTGTTACCGTATACCTTGCCAACCATCAATCCACGTCATTCTTTTCTTTTCTCTGTTTTAGTACCCAACAGCATAGTTTTATGTACCAGTTATATAACMGACCGGAAACTCTATGCAATGTTTCATTGGCTTTTCCGTTTCCGCTTGTTCGATGGCTTTTTTTGGTTGGCTATTATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26142</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>314542</contig_pos>
        <strand>+</strand>
        <context>ATTTCTTCCA[C/T]TTTTTTTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCA</left_flank>
        <right_flank>TTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCATCCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGCTGATAAAATACTTTTTATTTTATAATAAACATTTTTCCGTTGACCACTTTTTGCTATCTTTTACATGAACCGAGATATATGAACTCAAAGTTAACGCCTCTATTCTTGTACTTCGAGCTCAATTATCTCGCTTCAAGCTTGTTCTTCTACAGAGTGTTTACTGTAAGTCATGAAATTTTGGATACCCATCTTGTATAGTTTTTGATATATAAACTGCAGGATGAATAGATCTTTTTTGTTATTGAATTTTAGCAAAA</canonical>
            <polymorphic>ATGGGCTTCTTGGTTTTAGAGGTATGCTCTTCTAAAGTGTACTTCGTCAAGACGGAAAGAAACAAGACGCTCTCTTTTCTTTGCGTCTCTCCAACCTACACCACACTAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCAYTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCATCCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGCTGATAAAATACTTTTTATTTTATAATAAACATTTTTCCGTTGACCACTTTTTGCTATCTTTTACATGAACCGAGATATATGAACTCAAAGTTAACGCCTCTATTCTTGTACTTCGAGCTCAATTATCTCGCTTCAAGCTTGTTCTTCTACAGAGTGTTTACTGTAAGTCATGAAATTTTGGATACCCATCTTGTATAGTTTTTGATATATAAACTGCAGGATGAATAGATCTTTTTTGTTATTGAATTTTAGCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGGAATTTTTAGACACTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTTCCTTTCTTGTCTGATGAC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAG</canonical_amplicon>
		<polymorphic_amplicon>CTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCAYTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26143</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>314648</contig_pos>
        <strand>+</strand>
        <context>TGCACTTGTG[A/T]TTTTTTTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAGAAACTGCACTTGTG</left_flank>
        <right_flank>TTTTTTTCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCATCCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGCTGATAAAATACTTTTTATTTTATAATAAACATTTTTCCGTTGACCACTTTTTGCTATCTTTTACATGAACCGAGATATATGAACTCAAAGTTAACGCCTCTATTCTTGTACTTCGAGCTCAATTATCTCGCTTCAAGCTTGTTCTTCTACAGAGTGTTTACTGTAAGTCATGAAATTTTGGATACCCATCTTGTATAGTTTTTGATATATAAACTGCAGGATGAATAGATCTTTTTTGTTATTGAATTTTAGCAAAATTTGGTTTCACATTTTCTAAAACTTTGGCTCAGAATTTTCCTTTTTTTTTCATTTTCCGTTTTTCCCTCTCACTTTCTGTCGCTCTTCCTTCCCTAAAAAGAAAAA</canonical>
            <polymorphic>TAATTCGTAGTCTATAAACTTTCCTGAGCATCTAATACTTTTTGATTCTCTTCATCCCATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAGAAACTGCACTTGTGWTTTTTTTCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCATCCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGCTGATAAAATACTTTTTATTTTATAATAAACATTTTTCCGTTGACCACTTTTTGCTATCTTTTACATGAACCGAGATATATGAACTCAAAGTTAACGCCTCTATTCTTGTACTTCGAGCTCAATTATCTCGCTTCAAGCTTGTTCTTCTACAGAGTGTTTACTGTAAGTCATGAAATTTTGGATACCCATCTTGTATAGTTTTTGATATATAAACTGCAGGATGAATAGATCTTTTTTGTTATTGAATTTTAGCAAAATTTGGTTTCACATTTTCTAAAACTTTGGCTCAGAATTTTCCTTTTTTTTTCATTTTCCGTTTTTCCCTCTCACTTTCTGTCGCTCTTCCTTCCCTAAAAAGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATTCAATACCTCCAGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>GAGCTCGAAGTACAAGAATAGAG</pcr_primer_p2>
		<pcr_amplicon_size>352</pcr_amplicon_size>
		<canonical_amplicon>GAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCATCCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGCTGATAAAATACTTTTTATTTTATAATAAACATTTTTCCGTTGACCACTTTTTGCTATCTTTTACATGAACCGAGATATATGAACTCAAAGTTAACGCCTCTATTCTTGTACTTCGAGCTC</canonical_amplicon>
		<polymorphic_amplicon>GAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAGAAACTGCACTTGTGWTTTTTTTCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCATCCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGCTGATAAAATACTTTTTATTTTATAATAAACATTTTTCCGTTGACCACTTTTTGCTATCTTTTACATGAACCGAGATATATGAACTCAAAGTTAACGCCTCTATTCTTGTACTTCGAGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26144</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>314705</contig_pos>
        <strand>+</strand>
        <context>CCAYCCCCCC[C/G]CCCCCGCCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCATCCCCCC</left_flank>
        <right_flank>CCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCATCCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGCTGATAAAATACTTTTTATTTTATAATAAACATTTTTCCGTTGACCACTTTTTGCTATCTTTTACATGAACCGAGATATATGAACTCAAAGTTAACGCCTCTATTCTTGTACTTCGAGCTCAATTATCTCGCTTCAAGCTTGTTCTTCTACAGAGTGTTTACTGTAAGTCATGAAATTTTGGATACCCATCTTGTATAGTTTTTGATATATAAACTGCAGGATGAATAGATCTTTTTTGTTATTGAATTTTAGCAAAATTTGGTTTCACATTTTCTAAAACTTTGGCTCAGAATTTTCCTTTTTTTTTCATTTTCCGTTTTTCCCTCTCACTTTCTGTCGCTCTTCCTTCCCTAAAAAGAAAAATAATTCCAGCCCACCCCCCACTATACAAATTGGCTCATCAACCCATCGCCATCCGTT</canonical>
            <polymorphic>CATCCGCTCCTCATTTTTTCCCGAATTCCTCTCCCAATCTATTTCTCTTCAAAATCCACACAATCTCTTTTCTGTTCTACATTTTTCCTCTCTCCGATTTTTTTTTCAAAAAAAAACTTTTCAACGTGATTTTCCATTGTGTGTGCCTCTGATGATGGCCGATTTCTCTGTCGTCTCGGAATTTTTAGACACTTTTTTTCGTCTGTTTGAAACCTTTGAAAATGTGTCAAAAAGTTTTGTGTTAAGAGGGATTTTTTGACGGTTTTATTACCTTTCAATTTAGCTAGGATCACTTCTGATTTTTGCTTTTCGTCTCTCTTGCCGTAATTTCTTCCATTTTTTTTTCGAGAAATTCAATACCTCCAGTTTTCCCTCCCCCGTCCATGTTTTTCCCATTTCCGTAGACGTCATCAGACAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCATCCCCCCSCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGCTGATAAAATACTTTTTATTTTATAATAAACATTTTTCCGTTGACCACTTTTTGCTATCTTTTACATGAACCGAGATATATGAACTCAAAGTTAACGCCTCTATTCTTGTACTTCGAGCTCAATTATCTCGCTTCAAGCTTGTTCTTCTACAGAGTGTTTACTGTAAGTCATGAAATTTTGGATACCCATCTTGTATAGTTTTTGATATATAAACTGCAGGATGAATAGATCTTTTTTGTTATTGAATTTTAGCAAAATTTGGTTTCACATTTTCTAAAACTTTGGCTCAGAATTTTCCTTTTTTTTTCATTTTCCGTTTTTCCCTCTCACTTTCTGTCGCTCTTCCTTCCCTAAAAAGAAAAATAATTCCAGCCCACCCCCCACTATACAAATTGGCTCATCAACCCATCGCCATCCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAGAAAGGAAAGAAACTGC</pcr_primer_p1>
		<pcr_primer_p2>GCTCGAAGTACAAGAATAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>ACAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCATCCCCCCCCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGCTGATAAAATACTTTTTATTTTATAATAAACATTTTTCCGTTGACCACTTTTTGCTATCTTTTACATGAACCGAGATATATGAACTCAAAGTTAACGCCTCTATTCTTGTACTTCGAGC</canonical_amplicon>
		<polymorphic_amplicon>ACAAGAAAGGAAAGAAACTGCACTTGTGTTTTTTTTCAAAAATTTATTTCTAAAACTAGGTACTCTGTAAAATGGCCATCCCCCCSCCCCCGCCCAATCTATCAAAACTTCTCACTTTGAACCAATTTATCTCGATTCCTGTGAAAGATATTGAAAAGATGTAAGCTGATAAAATACTTTTTATTTTATAATAAACATTTTTCCGTTGACCACTTTTTGCTATCTTTTACATGAACCGAGATATATGAACTCAAAGTTAACGCCTCTATTCTTGTACTTCGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26145</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>341669</contig_pos>
        <strand></strand>
        <context>ccaaagtgct[T/A]cattttcttg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAGGTGTCAGGACCATGTTTAAGGAAGTACCCAAAATGTTCCAAAGTGCT</left_flank>
        <right_flank>CATTTTCTTGTTTTTTGCTTATTTCAGTTGACTTCTTCGTTTTTATCAGT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATTATCCTTTTTATTTACAACCACTATCAATAAACATTTCTGGGTGTGAAAAATCGACAGTTAAAATGTCCAATGTTCGAGCCACATGAGTTTTGTCGCGAAGTTGTCGGATGGTTCTCTTAAAAATTAAAGATTTATCGATTGCCAAAGTTGTTTCATCTCATGAAAATCACAACAGCATGCGGCGTGCCGTCTTTGGACAATCATAACAATACTTATTTTTGAGAAACTGCTTTAAAAATTTCACTAGCCTTGAATCAAACGTAAAATCTACAAATTTTTGTGCTTCCGAGATACTTCTGTCTAAAGATCTATCCGTTTTTATCAGCCTGGGTAATCTGGCTCTTTATGGTTTAACGGGGGTTTATTATTTAAACGGGGCTTTTGAAATTTTAAGGGGCTTTGAGAATTAACGGGGGTTTACATATTAGACAGGGGTTTTCAAAAGGTGTCAGGACCATGTTTAAGGAAGTACCCAAAATGTTCCAAAGTGCTTCATTTTCTTGTTTTTTGCTTATTTCAGTTGACTTCTTCGTTTTTATCAGTCTTTTGATTGTTTATTTCCCTGATTCCCAAACCATGATACTTTTCTGTTTGAAAATAAAAGCAAGATTCAAAGTAGGAAAGATCGGTTGAGGTGTTGCATGTAAACGGTTTGGAGGCTTTCAGAGCTGATAGAAATGAGCTGAAACTAACAAGAGAAGGAAGGGTGGTGCCAAACTTTTTAAACATGAAAGAAGACAAAAAAAGAAAAAAAGTGATTTGAAAAACGAAGAAGTCAACTGAAATAAGCAAAAAACAAGAAAATGTAGCACTTTGGAACATTTTGGGTACTTCCTTAAACATGGTCCTGACACCTTTTGAAAACCCCCGTCTAATATTTGTACCCCCGTTAATTCTCGAAACCCCTTCAAAATTTCAAAACCCCCGGCTAATATTTAAACCCCCGTTAATTGTTTGAATCCTCGTTATACCATAAAGAGCCGGTAATTTTAC</canonical>
            <polymorphic>AAAAATTATCCTTTTTATTTACAACCACTATCAATAAACATTTCTGGGTGTGAAAAATCGACAGTTAAAATGTCCAATGTTCGAGCCACATGAGTTTTGTCGCGAAGTTGTCGGATGGTTCTCTTAAAAATTAAAGATTTATCGATTGCCAAAGTTGTTTCATCTCATGAAAATCACAACAGCATGCGGCGTGCCGTCTTTGGACAATCATAACAATACTTATTTTTGAGAAACTGCTTTAAAAATTTCACTAGCCTTGAATCAAACGTAAAATCTACAAATTTTTGTGCTTCCGAGATACTTCTGTCTAAAGATCTATCCGTTTTTATCAGCCTGGGTAATCTGGCTCTTTATGGTTTAACGGGGGTTTATTATTTAAACGGGGCTTTTGAAATTTTAAGGGGCTTTGAGAATTAACGGGGGTTTACATATTAGACAGGGGTTTTCAAAAGGTGTCAGGACCATGTTTAAGGAAGTACCCAAAATGTTCCAAAGTGCTWCATTTTCTTGTTTTTTGCTTATTTCAGTTGACTTCTTCGTTTTTATCAGTCTTTTGATTGTTTATTTCCCTGATTCCCAAACCATGATACTTTTCTGTTTGAAAATAAAAGCAAGATTCAAAGTAGGAAAGATCGGTTGAGGTGTTGCATGTAAACGGTTTGGAGGCTTTCAGAGCTGATAGAAATGAGCTGAAACTAACAAGAGAAGGAAGGGTGGTGCCAAACTTTTTAAACATGAAAGAAGACAAAAAAAGAAAAAAAGTGATTTGAAAAACGAAGAAGTCAACTGAAATAAGCAAAAAACAAGAAAATGTAGCACTTTGGAACATTTTGGGTACTTCCTTAAACATGGTCCTGACACCTTTTGAAAACCCCCGTCTAATATTTGTACCCCCGTTAATTCTCGAAACCCCTTCAAAATTTCAAAACCCCCGGCTAATATTTAAACCCCCGTTAATTGTTTGAATCCTCGTTATACCATAAAGAGCCGGTAATTTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGATGGTTCTCTTAAAAATTA</pcr_primer_p1>
		<pcr_primer_p2>CGATCTTTCCTACTTTGAATCTT</pcr_primer_p2>
		<pcr_amplicon_size>524</pcr_amplicon_size>
		<canonical_amplicon>CGGATGGTTCTCTTAAAAATTAAAGATTTATCGATTGCCAAAGTTGTTTCATCTCATGAAAATCACAACAGCATGCGGCGTGCCGTCTTTGGACAATCATAACAATACTTATTTTTGAGAAACTGCTTTAAAAATTTCACTAGCCTTGAATCAAACGTAAAATCTACAAATTTTTGTGCTTCCGAGATACTTCTGTCTAAAGATCTATCCGTTTTTATCAGCCTGGGTAATCTGGCTCTTTATGGTTTAACGGGGGTTTATTATTTAAACGGGGCTTTTGAAATTTTAAGGGGCTTTGAGAATTAACGGGGGTTTACATATTAGACAGGGGTTTTCAAAAGGTGTCAGGACCATGTTTAAGGAAGTACCCAAAATGTTCCAAAGTGCTTCATTTTCTTGTTTTTTGCTTATTTCAGTTGACTTCTTCGTTTTTATCAGTCTTTTGATTGTTTATTTCCCTGATTCCCAAACCATGATACTTTTCTGTTTGAAAATAAAAGCAAGATTCAAAGTAGGAAAGATCG</canonical_amplicon>
		<polymorphic_amplicon>CGGATGGTTCTCTTAAAAATTAAAGATTTATCGATTGCCAAAGTTGTTTCATCTCATGAAAATCACAACAGCATGCGGCGTGCCGTCTTTGGACAATCATAACAATACTTATTTTTGAGAAACTGCTTTAAAAATTTCACTAGCCTTGAATCAAACGTAAAATCTACAAATTTTTGTGCTTCCGAGATACTTCTGTCTAAAGATCTATCCGTTTTTATCAGCCTGGGTAATCTGGCTCTTTATGGTTTAACGGGGGTTTATTATTTAAACGGGGCTTTTGAAATTTTAAGGGGCTTTGAGAATTAACGGGGGTTTACATATTAGACAGGGGTTTTCAAAAGGTGTCAGGACCATGTTTAAGGAAGTACCCAAAATGTTCCAAAGTGCTWCATTTTCTTGTTTTTTGCTTATTTCAGTTGACTTCTTCGTTTTTATCAGTCTTTTGATTGTTTATTTCCCTGATTCCCAAACCATGATACTTTTCTGTTTGAAAATAAAAGCAAGATTCAAAGTAGGAAAGATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26146</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>400633</contig_pos>
        <strand>+</strand>
        <context>TGTCCCTCGG[A/T]GACTCCATTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTATTCTCTCATGATTGCTCATCACTTACGAGTCCATACTGTCCCTCGG</left_flank>
        <right_flank>GACTCCATTGAAGTACATGATGATCTCTTGTGGTGGATCCTTGCGGTTGC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAGTTATGACACTGTAAACACACAGTGAATATCAGACCAATTCTCGGTCATTTACCATGATGGCCTAGAAAACTAAACTTGAAAAAGTTAGGCCACTTAGTTAAAATGGCCTAGAAAACGCCACATTTGGTCATTCCAAGGTCATAAAACTTGGTGGCCCAGAAAAACACTGTCTCTCTTTTTTACATTGAAATCTTACACGGCTAGGGATTGCTCATTCTTAAAGTCAAGCGGAATTTTCAGGCTAAAAGTGGTCATTTTCCGAATCAAAACAGTCGGTAAAACTGCGATTTTGAGCTCAAAAATTACCTCGAGCTGGTAGAATCTCTCGTTGTGTGCCTTCGACGTGGCGATGATCATCAGCCTTGGTCTCCAGTCTGCCTTGATGGCCATAATGGTCTTCTTGATCTCCTCGGAGTAGACTTCGTTGATCTGTAAATTCAAATTTCTTATTCTCTCATGATTGCTCATCACTTACGAGTCCATACTGTCCCTCGGTGACTCCATTGAAGTACATGATGATCTCTTGTGGTGGATCCTTGCGGTTGCGTCTGACGACTCCGAGAATTTGTTTGAGCACTGGGCCGACCACAGATCCATAGGTCTAAAAATATTGACTTTTTGTTGGAAAATCTGAAAATATTGATTTTTCCCTACATCTCGGGCCTGTGGAGCGTAGATGTAGCCGCCAGCAAACTGCTGGTGATTTTGCATCATGTTGGCGGCGAATCCAATCGATACTGGTCCCTGAAATCGATTATTTAATTACAAATTTCAGATTTATTATCCCTACGTCTCCAGCTCCTCCTTTTGACGACGTCTCGAATCCGATGAACAAAATGTTGGGGTTCAAGACAGTAGAATCGATTCGGTAGTTCAAACCGCCGAGCTTCATATTGGTCTGAAAAATTATGAATTTTTGAAAATTACAATTATTTCTAAAATTCTAACCTTGTTGACAATGTTCTGGAGAGTCTGTGGCTGACGGAAGATCTTCTC</canonical>
            <polymorphic>CAAGTTATGACACTGTAAACACACAGTGAATATCAGACCAATTCTCGGTCATTTACCATGATGGCCTAGAAAACTAAACTTGAAAAAGTTAGGCCACTTAGTTAAAATGGCCTAGAAAACGCCACATTTGGTCATTCCAAGGTCATAAAACTTGGTGGCCCAGAAAAACACTGTCTCTCTTTTTTACATTGAAATCTTACACGGCTAGGGATTGCTCATTCTTAAAGTCAAGCGGAATTTTCAGGCTAAAAGTGGTCATTTTCCGAATCAAAACAGTCGGTAAAACTGCGATTTTGAGCTCAAAAATTACCTCGAGCTGGTAGAATCTCTCGTTGTGTGCCTTCGACGTGGCGATGATCATCAGCCTTGGTCTCCAGTCTGCCTTGATGGCCATAATGGTCTTCTTGATCTCCTCGGAGTAGACTTCGTTGATCTGTAAATTCAAATTTCTTATTCTCTCATGATTGCTCATCACTTACGAGTCCATACTGTCCCTCGGWGACTCCATTGAAGTACATGATGATCTCTTGTGGTGGATCCTTGCGGTTGCGTCTGACGACTCCGAGAATTTGTTTGAGCACTGGGCCGACCACAGATCCATAGGTCTAAAAATATTGACTTTTTGTTGGAAAATCTGAAAATATTGATTTTTCCCTACATCTCGGGCCTGTGGAGCGTAGATGTAGCCGCCAGCAAACTGCTGGTGATTTTGCATCATGTTGGCGGCGAATCCAATCGATACTGGTCCCTGAAATCGATTATTTAATTACAAATTTCAGATTTATTATCCCTACGTCTCCAGCTCCTCCTTTTGACGACGTCTCGAATCCGATGAACAAAATGTTGGGGTTCAAGACAGTAGAATCGATTCGGTAGTTCAAACCGCCGAGCTTCATATTGGTCTGAAAAATTATGAATTTTTGAAAATTACAATTATTTCTAAAATTCTAACCTTGTTGACAATGTTCTGGAGAGTCTGTGGCTGACGGAAGATCTTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>275 124 83 80 68 53 45 34 33 31 31 28 27 19 13 12 12 11 9 5 3 2 2</canonical_bands>
                <polymorphic_bands>275 124 83 80 68 58 53 45 34 33 31 28 19 13 12 12 11 9 5 3 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAATGGTCTTCTTGATCTCCTC</pcr_primer_p1>
		<pcr_primer_p2>TATTTTCAGATTTTCCAACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATAATGGTCTTCTTGATCTCCTCGGAGTAGACTTCGTTGATCTGTAAATTCAAATTTCTTATTCTCTCATGATTGCTCATCACTTACGAGTCCATACTGTCCCTCGGTGACTCCATTGAAGTACATGATGATCTCTTGTGGTGGATCCTTGCGGTTGCGTCTGACGACTCCGAGAATTTGTTTGAGCACTGGGCCGACCACAGATCCATAGGTCTAAAAATATTGACTTTTTGTTGGAAAATCTGAAAATA</canonical_amplicon>
		<polymorphic_amplicon>ATAATGGTCTTCTTGATCTCCTCGGAGTAGACTTCGTTGATCTGTAAATTCAAATTTCTTATTCTCTCATGATTGCTCATCACTTACGAGTCCATACTGTCCCTCGGWGACTCCATTGAAGTACATGATGATCTCTTGTGGTGGATCCTTGCGGTTGCGTCTGACGACTCCGAGAATTTGTTTGAGCACTGGGCCGACCACAGATCCATAGGTCTAAAAATATTGACTTTTTGTTGGAAAATCTGAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26149</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>411107</contig_pos>
        <strand></strand>
        <context>tcgacacggt[C/T]gtcgagcrat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCGAATTTCAAAATCTCAATTTCCCACTAGAGTAACGTGTCGACACGGT</left_flank>
        <right_flank>GTCGAGCGATTTTGAGTCGAAATGTCGTTTTTAAGGAGTCGACCAAAGTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCAGAATTACAGAATTTTAGAATTTTAGACTTTTAGAATTTCAAAACTTTAGCATTTCAATGATTCTGAAAATCTCAGAACATTCAGAATCTCAGAATCTTAAAAACGAAGAAGTACCTCTCCGTTGAAACATATATAAATAATTGCATTTGATGTGCAATTCAGTGTGTACAGTGTTGGTACCGAAATGAACCATTCGACATCTTTTGTGGCTAAAATAATTGGGAGAACTCGAAAAAGGACCCAGGCAAATGTGTAGAAAGCCAAAAGGAGACTAAATTGAATAGCGCATCTGGAAAAAATTTTAGAAATCCAGAAATGTCTAAATTTCTCCATTTTGACCTAATATCCCGATTTCTCCGAACTTTCTGTCTTCCACCTCCAACTGACACAGTAGCTGGTGAGTAGTGGTGTATTTTCCAGAAGATCTAAATTTTCAAAAAAAATTCGAATTTCAAAATCTCAATTTCCCACTAGAGTAACGTGTCGACACGGTCGTCGAGCGATTTTGAGTCGAAATGTCGTTTTTAAGGAGTCGACCAAAGTCGACACGACACCGGCCTAACTATATGGTGACCTAATTTTCTCAAAATAAATTTTCTAGGACGCGAAACTTTTTATGCCTTCAAATCATAGATGTCCGGAATTACTTTTTTGAGAGACGGAATCCGGTATAAACTAATTTTCTCGGAATCCGGAATACGGACAAATGAAAATTTCATAGAATACGGAATCCGGAATGACAGTAATTTCCCGGAATACGAAAAACGAAAAAATTCGCGGAATCCCGAGTCCGAATTCCGAACATCTCTGCTATAAATGGTATCATTTTCATCTAATGTGTTTTCAAGGTCATTTTAACACCGTGGCCTAACTTTTATAAGTTGAGTTTTCTAGGCCACAATGTTAAATGGCCTAGAAATCACACCGGGATAATGATAAACCATTCCAAAGTCGTAAACTTTGGTGGCCTAGAAAATGCAACTTGCAACAGTTT</canonical>
            <polymorphic>ATTTCAGAATTACAGAATTTTAGAATTTTAGACTTTTAGAATTTCAAAACTTTAGCATTTCAATGATTCTGAAAATCTCAGAACATTCAGAATCTCAGAATCTTAAAAACGAAGAAGTACCTCTCCGTTGAAACATATATAAATAATTGCATTTGATGTGCAATTCAGTGTGTACAGTGTTGGTACCGAAATGAACCATTCGACATCTTTTGTGGCTAAAATAATTGGGAGAACTCGAAAAAGGACCCAGGCAAATGTGTAGAAAGCCAAAAGGAGACTAAATTGAATAGCGCATCTGGAAAAAATTTTAGAAATCCAGAAATGTCTAAATTTCTCCATTTTGACCTAATATCCCGATTTCTCCGAACTTTCTGTCTTCCACCTCCAACTGACACAGTAGCTGGTGAGTAGTGGTGTATTTTCCAGAAGATCTAAATTTTCAAAAAAAATTCGAATTTCAAAATCTCAATTTCCCACTAGAGTAACGTGTCGACACGGTYGTCGAGCGATTTTGAGTCGAAATGTCGTTTTTAAGGAGTCGACCAAAGTCGACACGACACCGGCCTAACTATATGGTGACCTAATTTTCTCAAAATAAATTTTCTAGGACGCGAAACTTTTTATGCCTTCAAATCATAGATGTCCGGAATTACTTTTTTGAGAGACGGAATCCGGTATAAACTAATTTTCTCGGAATCCGGAATACGGACAAATGAAAATTTCATAGAATACGGAATCCGGAATGACAGTAATTTCCCGGAATACGAAAAACGAAAAAATTCGCGGAATCCCGAGTCCGAATTCCGAACATCTCTGCTATAAATGGTATCATTTTCATCTAATGTGTTTTCAAGGTCATTTTAACACCGTGGCCTAACTTTTATAAGTTGAGTTTTCTAGGCCACAATGTTAAATGGCCTAGAAATCACACCGGGATAATGATAAACCATTCCAAAGTCGTAAACTTTGGTGGCCTAGAAAATGCAACTTGCAACAGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNGTC</site>
                <isoschizomers>
                    <enzyme>AspI</enzyme>
                    <enzyme>PflFI</enzyme>
                    <enzyme>PsyI</enzyme>
                    <enzyme>TelI</enzyme>
                    <enzyme>Tth111I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGTATTTTCCAGAAGATCTAA</pcr_primer_p1>
		<pcr_primer_p2>ATCTCGATAATATGCTATGTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>764</pcr_amplicon_size>
		<canonical_amplicon>GGTGTATTTTCCAGAAGATCTAAATTTTCAAAAAAAATTCGAATTTCAAAATCTCAATTTCCCACTAGAGTAACGTGTCGACACGGTCGTCGAGCGATTTTGAGTCGAAAT</canonical_amplicon>
		<polymorphic_amplicon>GGTGTATTTTCCAGAAGATCTAAATTTTCAAAAAAAATTCGAATTTCAAAATCTCAATTTCCCACTAGAGTAACGTGTCGACACGGTYGTCGAGCGATTTTGAGTCGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26150</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>411115</contig_pos>
        <strand></strand>
        <context>gtygtcgagc[G/A]attttgagtc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCAAAATCTCAATTTCCCACTAGAGTAACGTGTCGACACGGTCGTCGAGC</left_flank>
        <right_flank>ATTTTGAGTCGAAATGTCGTTTTTAAGGAGTCGACCAAAGTCGACACGAC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTACAGAATTTTAGAATTTTAGACTTTTAGAATTTCAAAACTTTAGCATTTCAATGATTCTGAAAATCTCAGAACATTCAGAATCTCAGAATCTTAAAAACGAAGAAGTACCTCTCCGTTGAAACATATATAAATAATTGCATTTGATGTGCAATTCAGTGTGTACAGTGTTGGTACCGAAATGAACCATTCGACATCTTTTGTGGCTAAAATAATTGGGAGAACTCGAAAAAGGACCCAGGCAAATGTGTAGAAAGCCAAAAGGAGACTAAATTGAATAGCGCATCTGGAAAAAATTTTAGAAATCCAGAAATGTCTAAATTTCTCCATTTTGACCTAATATCCCGATTTCTCCGAACTTTCTGTCTTCCACCTCCAACTGACACAGTAGCTGGTGAGTAGTGGTGTATTTTCCAGAAGATCTAAATTTTCAAAAAAAATTCGAATTTCAAAATCTCAATTTCCCACTAGAGTAACGTGTCGACACGGTCGTCGAGCGATTTTGAGTCGAAATGTCGTTTTTAAGGAGTCGACCAAAGTCGACACGACACCGGCCTAACTATATGGTGACCTAATTTTCTCAAAATAAATTTTCTAGGACGCGAAACTTTTTATGCCTTCAAATCATAGATGTCCGGAATTACTTTTTTGAGAGACGGAATCCGGTATAAACTAATTTTCTCGGAATCCGGAATACGGACAAATGAAAATTTCATAGAATACGGAATCCGGAATGACAGTAATTTCCCGGAATACGAAAAACGAAAAAATTCGCGGAATCCCGAGTCCGAATTCCGAACATCTCTGCTATAAATGGTATCATTTTCATCTAATGTGTTTTCAAGGTCATTTTAACACCGTGGCCTAACTTTTATAAGTTGAGTTTTCTAGGCCACAATGTTAAATGGCCTAGAAATCACACCGGGATAATGATAAACCATTCCAAAGTCGTAAACTTTGGTGGCCTAGAAAATGCAACTTGCAACAGTTTGGCCATCA</canonical>
            <polymorphic>ATTACAGAATTTTAGAATTTTAGACTTTTAGAATTTCAAAACTTTAGCATTTCAATGATTCTGAAAATCTCAGAACATTCAGAATCTCAGAATCTTAAAAACGAAGAAGTACCTCTCCGTTGAAACATATATAAATAATTGCATTTGATGTGCAATTCAGTGTGTACAGTGTTGGTACCGAAATGAACCATTCGACATCTTTTGTGGCTAAAATAATTGGGAGAACTCGAAAAAGGACCCAGGCAAATGTGTAGAAAGCCAAAAGGAGACTAAATTGAATAGCGCATCTGGAAAAAATTTTAGAAATCCAGAAATGTCTAAATTTCTCCATTTTGACCTAATATCCCGATTTCTCCGAACTTTCTGTCTTCCACCTCCAACTGACACAGTAGCTGGTGAGTAGTGGTGTATTTTCCAGAAGATCTAAATTTTCAAAAAAAATTCGAATTTCAAAATCTCAATTTCCCACTAGAGTAACGTGTCGACACGGTCGTCGAGCRATTTTGAGTCGAAATGTCGTTTTTAAGGAGTCGACCAAAGTCGACACGACACCGGCCTAACTATATGGTGACCTAATTTTCTCAAAATAAATTTTCTAGGACGCGAAACTTTTTATGCCTTCAAATCATAGATGTCCGGAATTACTTTTTTGAGAGACGGAATCCGGTATAAACTAATTTTCTCGGAATCCGGAATACGGACAAATGAAAATTTCATAGAATACGGAATCCGGAATGACAGTAATTTCCCGGAATACGAAAAACGAAAAAATTCGCGGAATCCCGAGTCCGAATTCCGAACATCTCTGCTATAAATGGTATCATTTTCATCTAATGTGTTTTCAAGGTCATTTTAACACCGTGGCCTAACTTTTATAAGTTGAGTTTTCTAGGCCACAATGTTAAATGGCCTAGAAATCACACCGGGATAATGATAAACCATTCCAAAGTCGTAAACTTTGGTGGCCTAGAAAATGCAACTTGCAACAGTTTGGCCATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGTATTTTCCAGAAGATCTAA</pcr_primer_p1>
		<pcr_primer_p2>ATCTCGATAATATGCTATGTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>764</pcr_amplicon_size>
		<canonical_amplicon>GGTGTATTTTCCAGAAGATCTAAATTTTCAAAAAAAATTCGAATTTCAAAATCTCAATTTCCCACTAGAGTAACGTGTCGACACGGTCGTCGAGCGATTTTGAGTCGAAATGTCGTTTT</canonical_amplicon>
		<polymorphic_amplicon>GGTGTATTTTCCAGAAGATCTAAATTTTCAAAAAAAATTCGAATTTCAAAATCTCAATTTCCCACTAGAGTAACGTGTCGACACGGTCGTCGAGCRATTTTGAGTCGAAATGTCGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26151</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>413670</contig_pos>
        <strand>+</strand>
        <context>AAACTTTCAM[A/C]ACAAGAATTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGCATAGTACTCCGACTCGGAATTTGGTATGTAGAAACTGAAACTTTCAC</left_flank>
        <right_flank>ACAAGAATTAAAAAAAAAATCTGAAAATTTCTCACAAATCTGAATAGGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACATCAGCCCAAATTTGTAAAATTGAGCGGCAGTATCTGGAAAAATTTCTTATTAAACAATTTTTTTTCGAAAAGAACATGTTTCACCTCGTCCGATTTTTTCCTGGTTGCTGGAATTGACTTAATTTAACTGGATGAAATCCAATCATCGTTTTTGAATACTTTTCGTCCCATTTTTCACGATCATCATTCCAAATATATACGGTTTTGGGAGATCTAAATATAAAAAATAATTTTGTTTTTCAATTAAGCTTTTCAAAACACCCAGTATTAGCCTCTTGTACTTATTTAGGTCGCTGTGAATAATTATTGCTCATTATAAACTATTTTAAGCAATTTTTCCTCGAGTATTCAATAAAACTCACTCTTGGGTTTTCACCGACTTCATAAATTTATCAACCGCGATTTCCAAATACAACCCGTTTTCGAAAAATACCCTCATTAGTGTCGCATAGTACTCCGACTCGGAATTTGGTATGTAGAAACTGAAACTTTCACAACAAGAATTAAAAAAAAAATCTGAAAATTTCTCACAAATCTGAATAGGTCCTCCCTTTGCCTGATGTCATTTCTTGTTTTGCCAATTTTTTATTTCCATTAATTTCCAATCCGTTTTGAAATTGTTTCCATGCGTTTTGAATTCCTGGACTTTTGGAGGTTTCAAAAGTTTTGACGACATTTCGGCTGGCGAAAATGCCTGAAAATGAATTTTTGTGCAACATTTCTGATAGGTGAAACATTGCATAACAAATCAACTAAATCAAGGTTTCGAAAAATTCGAAAAATTCGAAAAACTCAAAAAAAAATTGTAATTTTCGAAAATCTCAAAAAAATCTTACCAACATCCAAATCCCAAAAAAGGTCCGATTCATCTAAAACAACACCAGTTGAATGGTGTACTGTAGAGAAATCGATTTCTTGCCAAATGTTAAAAATAGCATCATCTGCCATCAAAAAATAGCCCTGCACATTAGCTAATCCCATTTCTTTAGCCAAAGT</canonical>
            <polymorphic>TACATCAGCCCAAATTTGTAAAATTGAGCGGCAGTATCTGGAAAAATTTCTTATTAAACAATTTTTTTTCGAAAAGAACATGTTTCACCTCGTCCGATTTTTTCCTGGTTGCTGGAATTGACTTAATTTAACTGGATGAAATCCAATCATCGTTTTTGAATACTTTTCGTCCCATTTTTCACGATCATCATTCCAAATATATACGGTTTTGGGAGATCTAAATATAAAAAATAATTTTGTTTTTCAATTAAGCTTTTCAAAACACCCAGTATTAGCCTCTTGTACTTATTTAGGTCGCTGTGAATAATTATTGCTCATTATAAACTATTTTAAGCAATTTTTCCTCGAGTATTCAATAAAACTCACTCTTGGGTTTTCACCGACTTCATAAATTTATCAACCGCGATTTCCAAATACAACCCGTTTTCGAAAAATACCCTCATTAGTGTCGCATAGTACTCCGACTCGGAATTTGGTATGTAGAAACTGAAACTTTCACMACAAGAATTAAAAAAAAAATCTGAAAATTTCTCACAAATCTGAATAGGTCCTCCCTTTGCCTGATGTCATTTCTTGTTTTGCCAATTTTTTATTTCCATTAATTTCCAATCCGTTTTGAAATTGTTTCCATGCGTTTTGAATTCCTGGACTTTTGGAGGTTTCAAAAGTTTTGACGACATTTCGGCTGGCGAAAATGCCTGAAAATGAATTTTTGTGCAACATTTCTGATAGGTGAAACATTGCATAACAAATCAACTAAATCAAGGTTTCGAAAAATTCGAAAAATTCGAAAAACTCAAAAAAAAATTGTAATTTTCGAAAATCTCAAAAAAATCTTACCAACATCCAAATCCCAAAAAAGGTCCGATTCATCTAAAACAACACCAGTTGAATGGTGTACTGTAGAGAAATCGATTTCTTGCCAAATGTTAAAAATAGCATCATCTGCCATCAAAAAATAGCCCTGCACATTAGCTAATCCCATTTCTTTAGCCAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCTCGAGTATTCAATAAAAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTGGCAAAACAAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCCTCGAGTATTCAATAAAACTCACTCTTGGGTTTTCACCGACTTCATAAATTTATCAACCGCGATTTCCAAATACAACCCGTTTTCGAAAAATACCCTCATTAGTGTCGCATAGTACTCCGACTCGGAATTTGGTATGTAGAAACTGAAACTTTCACAACAAGAATTAAAAAAAAAATCTGAAAATTTCTCACAAATCTGAATAGGTCCTCCCTTTGCCTGATGTCATTTCTTGTTTTGCCAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCCTCGAGTATTCAATAAAACTCACTCTTGGGTTTTCACCGACTTCATAAATTTATCAACCGCGATTTCCAAATACAACCCGTTTTCGAAAAATACCCTCATTAGTGTCGCATAGTACTCCGACTCGGAATTTGGTATGTAGAAACTGAAACTTTCACMACAAGAATTAAAAAAAAAATCTGAAAATTTCTCACAAATCTGAATAGGTCCTCCCTTTGCCTGATGTCATTTCTTGTTTTGCCAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26152</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>413681</contig_pos>
        <strand>+</strand>
        <context>ACAAGAATTA[A/T]AAAAAAAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCGACTCGGAATTTGGTATGTAGAAACTGAAACTTTCACAACAAGAATTA</left_flank>
        <right_flank>AAAAAAAATCTGAAAATTTCTCACAAATCTGAATAGGTCCTCCCTTTGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTGTAAAATTGAGCGGCAGTATCTGGAAAAATTTCTTATTAAACAATTTTTTTTCGAAAAGAACATGTTTCACCTCGTCCGATTTTTTCCTGGTTGCTGGAATTGACTTAATTTAACTGGATGAAATCCAATCATCGTTTTTGAATACTTTTCGTCCCATTTTTCACGATCATCATTCCAAATATATACGGTTTTGGGAGATCTAAATATAAAAAATAATTTTGTTTTTCAATTAAGCTTTTCAAAACACCCAGTATTAGCCTCTTGTACTTATTTAGGTCGCTGTGAATAATTATTGCTCATTATAAACTATTTTAAGCAATTTTTCCTCGAGTATTCAATAAAACTCACTCTTGGGTTTTCACCGACTTCATAAATTTATCAACCGCGATTTCCAAATACAACCCGTTTTCGAAAAATACCCTCATTAGTGTCGCATAGTACTCCGACTCGGAATTTGGTATGTAGAAACTGAAACTTTCACAACAAGAATTAAAAAAAAAATCTGAAAATTTCTCACAAATCTGAATAGGTCCTCCCTTTGCCTGATGTCATTTCTTGTTTTGCCAATTTTTTATTTCCATTAATTTCCAATCCGTTTTGAAATTGTTTCCATGCGTTTTGAATTCCTGGACTTTTGGAGGTTTCAAAAGTTTTGACGACATTTCGGCTGGCGAAAATGCCTGAAAATGAATTTTTGTGCAACATTTCTGATAGGTGAAACATTGCATAACAAATCAACTAAATCAAGGTTTCGAAAAATTCGAAAAATTCGAAAAACTCAAAAAAAAATTGTAATTTTCGAAAATCTCAAAAAAATCTTACCAACATCCAAATCCCAAAAAAGGTCCGATTCATCTAAAACAACACCAGTTGAATGGTGTACTGTAGAGAAATCGATTTCTTGCCAAATGTTAAAAATAGCATCATCTGCCATCAAAAAATAGCCCTGCACATTAGCTAATCCCATTTCTTTAGCCAAAGTTAAACAGTGGT</canonical>
            <polymorphic>AAATTTGTAAAATTGAGCGGCAGTATCTGGAAAAATTTCTTATTAAACAATTTTTTTTCGAAAAGAACATGTTTCACCTCGTCCGATTTTTTCCTGGTTGCTGGAATTGACTTAATTTAACTGGATGAAATCCAATCATCGTTTTTGAATACTTTTCGTCCCATTTTTCACGATCATCATTCCAAATATATACGGTTTTGGGAGATCTAAATATAAAAAATAATTTTGTTTTTCAATTAAGCTTTTCAAAACACCCAGTATTAGCCTCTTGTACTTATTTAGGTCGCTGTGAATAATTATTGCTCATTATAAACTATTTTAAGCAATTTTTCCTCGAGTATTCAATAAAACTCACTCTTGGGTTTTCACCGACTTCATAAATTTATCAACCGCGATTTCCAAATACAACCCGTTTTCGAAAAATACCCTCATTAGTGTCGCATAGTACTCCGACTCGGAATTTGGTATGTAGAAACTGAAACTTTCACAACAAGAATTAWAAAAAAAATCTGAAAATTTCTCACAAATCTGAATAGGTCCTCCCTTTGCCTGATGTCATTTCTTGTTTTGCCAATTTTTTATTTCCATTAATTTCCAATCCGTTTTGAAATTGTTTCCATGCGTTTTGAATTCCTGGACTTTTGGAGGTTTCAAAAGTTTTGACGACATTTCGGCTGGCGAAAATGCCTGAAAATGAATTTTTGTGCAACATTTCTGATAGGTGAAACATTGCATAACAAATCAACTAAATCAAGGTTTCGAAAAATTCGAAAAATTCGAAAAACTCAAAAAAAAATTGTAATTTTCGAAAATCTCAAAAAAATCTTACCAACATCCAAATCCCAAAAAAGGTCCGATTCATCTAAAACAACACCAGTTGAATGGTGTACTGTAGAGAAATCGATTTCTTGCCAAATGTTAAAAATAGCATCATCTGCCATCAAAAAATAGCCCTGCACATTAGCTAATCCCATTTCTTTAGCCAAAGTTAAACAGTGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>331 178 120 91 82 70 69 43 11 5</canonical_bands>
                <polymorphic_bands>331 269 120 82 70 69 43 11 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCCTCGAGTATTCAATAAAAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTGGCAAAACAAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCCTCGAGTATTCAATAAAACTCACTCTTGGGTTTTCACCGACTTCATAAATTTATCAACCGCGATTTCCAAATACAACCCGTTTTCGAAAAATACCCTCATTAGTGTCGCATAGTACTCCGACTCGGAATTTGGTATGTAGAAACTGAAACTTTCACAACAAGAATTAAAAAAAAAATCTGAAAATTTCTCACAAATCTGAATAGGTCCTCCCTTTGCCTGATGTCATTTCTTGTTTTGCCAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCCTCGAGTATTCAATAAAACTCACTCTTGGGTTTTCACCGACTTCATAAATTTATCAACCGCGATTTCCAAATACAACCCGTTTTCGAAAAATACCCTCATTAGTGTCGCATAGTACTCCGACTCGGAATTTGGTATGTAGAAACTGAAACTTTCACAACAAGAATTAWAAAAAAAATCTGAAAATTTCTCACAAATCTGAATAGGTCCTCCCTTTGCCTGATGTCATTTCTTGTTTTGCCAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26153</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>453811</contig_pos>
        <strand>+</strand>
        <context>AAAATTAGAA[C/T]TTTTGGAATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTCCCACCACGAAAACTTAAAAATGGAAATAATGGCATAAAAATTAGAA</left_flank>
        <right_flank>TTTTGGAATCAGAGCAAATACAAATACTTAAATTGAATTTGTTATGTTTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATGGAACCATATTCAGTCAACCGTCATCGTGAGTTTAAAAATCTGCAGTAACCCAATACTAATCGGAAAATTGAACTTGACTTGTCAATAAATTGCCCGCGGTATGTCCGGGGTATCAGGTTCCTGTGATAAAATAGAAGAAAATCAACAAGAAATGTAACAAAATCGGTTTATTATGAACAAGTTAGAAAGAAACAACAAATAAAAGCTTAGAATTCAAGCAAACTCACTTGAAATCCTTAAAAAGAGTCTCTCAAAAACCACGAGCCAAATCCAAGCTCGCAATCACTCAAAACTAAATTTAAACTGTGCGCGCGCCGAGCGGGATAGCGGAGTGTCGTTGCGTGGTTAGAGGGAACCTTTAGAAGGAGTTGGAGGGTAGATGCACCAGGCAACTAATAGTTTAAAAATTAGTACACAAGCTCAGGTTTTAACAAAAAAATTTTGGGTCCCACCACGAAAACTTAAAAATGGAAATAATGGCATAAAAATTAGAACTTTTGGAATCAGAGCAAATACAAATACTTAAATTGAATTTGTTATGTTTCGAGTATCAAAATGAGTGTTTTCTTTAGGGGTAAAAGACCGTCACTTGTTAAATTTTGAGCGGACACTGGAAATATCCTCAAATTAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAA</canonical>
            <polymorphic>CAATGGAACCATATTCAGTCAACCGTCATCGTGAGTTTAAAAATCTGCAGTAACCCAATACTAATCGGAAAATTGAACTTGACTTGTCAATAAATTGCCCGCGGTATGTCCGGGGTATCAGGTTCCTGTGATAAAATAGAAGAAAATCAACAAGAAATGTAACAAAATCGGTTTATTATGAACAAGTTAGAAAGAAACAACAAATAAAAGCTTAGAATTCAAGCAAACTCACTTGAAATCCTTAAAAAGAGTCTCTCAAAAACCACGAGCCAAATCCAAGCTCGCAATCACTCAAAACTAAATTTAAACTGTGCGCGCGCCGAGCGGGATAGCGGAGTGTCGTTGCGTGGTTAGAGGGAACCTTTAGAAGGAGTTGGAGGGTAGATGCACCAGGCAACTAATAGTTTAAAAATTAGTACACAAGCTCAGGTTTTAACAAAAAAATTTTGGGTCCCACCACGAAAACTTAAAAATGGAAATAATGGCATAAAAATTAGAAYTTTTGGAATCAGAGCAAATACAAATACTTAAATTGAATTTGTTATGTTTCGAGTATCAAAATGAGTGTTTTCTTTAGGGGTAAAAGACCGTCACTTGTTAAATTTTGAGCGGACACTGGAAATATCCTCAAATTAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGGAAAATTGAACTTGACT</pcr_primer_p1>
		<pcr_primer_p2>TGATACTCGAAACATAACAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>495</pcr_amplicon_size>
		<canonical_amplicon>ATCGGAAAATTGAACTTGACTTGTCAATAAATTGCCCGCGGTATGTCCGGGGTATCAGGTTCCTGTGATAAAATAGAAGAAAATCAACAAGAAATGTAACAAAATCGGTTTATTATGAACAAGTTAGAAAGAAACAACAAATAAAAGCTTAGAATTCAAGCAAACTCACTTGAAATCCTTAAAAAGAGTCTCTCAAAAACCACGAGCCAAATCCAAGCTCGCAATCACTCAAAACTAAATTTAAACTGTGCGCGCGCCGAGCGGGATAGCGGAGTGTCGTTGCGTGGTTAGAGGGAACCTTTAGAAGGAGTTGGAGGGTAGATGCACCAGGCAACTAATAGTTTAAAAATTAGTACACAAGCTCAGGTTTTAACAAAAAAATTTTGGGTCCCACCACGAAAACTTAAAAATGGAAATAATGGCATAAAAATTAGAACTTTTGGAATCAGAGCAAATACAAATACTTAAATTGAATTTGTTATGTTTCGAGTATCA</canonical_amplicon>
		<polymorphic_amplicon>ATCGGAAAATTGAACTTGACTTGTCAATAAATTGCCCGCGGTATGTCCGGGGTATCAGGTTCCTGTGATAAAATAGAAGAAAATCAACAAGAAATGTAACAAAATCGGTTTATTATGAACAAGTTAGAAAGAAACAACAAATAAAAGCTTAGAATTCAAGCAAACTCACTTGAAATCCTTAAAAAGAGTCTCTCAAAAACCACGAGCCAAATCCAAGCTCGCAATCACTCAAAACTAAATTTAAACTGTGCGCGCGCCGAGCGGGATAGCGGAGTGTCGTTGCGTGGTTAGAGGGAACCTTTAGAAGGAGTTGGAGGGTAGATGCACCAGGCAACTAATAGTTTAAAAATTAGTACACAAGCTCAGGTTTTAACAAAAAAATTTTGGGTCCCACCACGAAAACTTAAAAATGGAAATAATGGCATAAAAATTAGAAYTTTTGGAATCAGAGCAAATACAAATACTTAAATTGAATTTGTTATGTTTCGAGTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26154</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>453827</contig_pos>
        <strand>+</strand>
        <context>GAATCAGAGC[A/G]AATACAAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTAAAAATGGAAATAATGGCATAAAAATTAGAACTTTTGGAATCAGAGC</left_flank>
        <right_flank>AATACAAATACTTAAATTGAATTTGTTATGTTTCGAGTATCAAAATGAGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCAACCGTCATCGTGAGTTTAAAAATCTGCAGTAACCCAATACTAATCGGAAAATTGAACTTGACTTGTCAATAAATTGCCCGCGGTATGTCCGGGGTATCAGGTTCCTGTGATAAAATAGAAGAAAATCAACAAGAAATGTAACAAAATCGGTTTATTATGAACAAGTTAGAAAGAAACAACAAATAAAAGCTTAGAATTCAAGCAAACTCACTTGAAATCCTTAAAAAGAGTCTCTCAAAAACCACGAGCCAAATCCAAGCTCGCAATCACTCAAAACTAAATTTAAACTGTGCGCGCGCCGAGCGGGATAGCGGAGTGTCGTTGCGTGGTTAGAGGGAACCTTTAGAAGGAGTTGGAGGGTAGATGCACCAGGCAACTAATAGTTTAAAAATTAGTACACAAGCTCAGGTTTTAACAAAAAAATTTTGGGTCCCACCACGAAAACTTAAAAATGGAAATAATGGCATAAAAATTAGAACTTTTGGAATCAGAGCAAATACAAATACTTAAATTGAATTTGTTATGTTTCGAGTATCAAAATGAGTGTTTTCTTTAGGGGTAAAAGACCGTCACTTGTTAAATTTTGAGCGGACACTGGAAATATCCTCAAATTAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCA</canonical>
            <polymorphic>AGTCAACCGTCATCGTGAGTTTAAAAATCTGCAGTAACCCAATACTAATCGGAAAATTGAACTTGACTTGTCAATAAATTGCCCGCGGTATGTCCGGGGTATCAGGTTCCTGTGATAAAATAGAAGAAAATCAACAAGAAATGTAACAAAATCGGTTTATTATGAACAAGTTAGAAAGAAACAACAAATAAAAGCTTAGAATTCAAGCAAACTCACTTGAAATCCTTAAAAAGAGTCTCTCAAAAACCACGAGCCAAATCCAAGCTCGCAATCACTCAAAACTAAATTTAAACTGTGCGCGCGCCGAGCGGGATAGCGGAGTGTCGTTGCGTGGTTAGAGGGAACCTTTAGAAGGAGTTGGAGGGTAGATGCACCAGGCAACTAATAGTTTAAAAATTAGTACACAAGCTCAGGTTTTAACAAAAAAATTTTGGGTCCCACCACGAAAACTTAAAAATGGAAATAATGGCATAAAAATTAGAACTTTTGGAATCAGAGCRAATACAAATACTTAAATTGAATTTGTTATGTTTCGAGTATCAAAATGAGTGTTTTCTTTAGGGGTAAAAGACCGTCACTTGTTAAATTTTGAGCGGACACTGGAAATATCCTCAAATTAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGGAAAATTGAACTTGACT</pcr_primer_p1>
		<pcr_primer_p2>CCTAAAGAAAACACTCATTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>515</pcr_amplicon_size>
		<canonical_amplicon>ATCGGAAAATTGAACTTGACTTGTCAATAAATTGCCCGCGGTATGTCCGGGGTATCAGGTTCCTGTGATAAAATAGAAGAAAATCAACAAGAAATGTAACAAAATCGGTTTATTATGAACAAGTTAGAAAGAAACAACAAATAAAAGCTTAGAATTCAAGCAAACTCACTTGAAATCCTTAAAAAGAGTCTCTCAAAAACCACGAGCCAAATCCAAGCTCGCAATCACTCAAAACTAAATTTAAACTGTGCGCGCGCCGAGCGGGATAGCGGAGTGTCGTTGCGTGGTTAGAGGGAACCTTTAGAAGGAGTTGGAGGGTAGATGCACCAGGCAACTAATAGTTTAAAAATTAGTACACAAGCTCAGGTTTTAACAAAAAAATTTTGGGTCCCACCACGAAAACTTAAAAATGGAAATAATGGCATAAAAATTAGAACTTTTGGAATCAGAGCAAATACAAATACTTAAATTGAATTTGTTATGTTTCGAGTATCAAAATGAGTGTTTTCTTTAGG</canonical_amplicon>
		<polymorphic_amplicon>ATCGGAAAATTGAACTTGACTTGTCAATAAATTGCCCGCGGTATGTCCGGGGTATCAGGTTCCTGTGATAAAATAGAAGAAAATCAACAAGAAATGTAACAAAATCGGTTTATTATGAACAAGTTAGAAAGAAACAACAAATAAAAGCTTAGAATTCAAGCAAACTCACTTGAAATCCTTAAAAAGAGTCTCTCAAAAACCACGAGCCAAATCCAAGCTCGCAATCACTCAAAACTAAATTTAAACTGTGCGCGCGCCGAGCGGGATAGCGGAGTGTCGTTGCGTGGTTAGAGGGAACCTTTAGAAGGAGTTGGAGGGTAGATGCACCAGGCAACTAATAGTTTAAAAATTAGTACACAAGCTCAGGTTTTAACAAAAAAATTTTGGGTCCCACCACGAAAACTTAAAAATGGAAATAATGGCATAAAAATTAGAACTTTTGGAATCAGAGCRAATACAAATACTTAAATTGAATTTGTTATGTTTCGAGTATCAAAATGAGTGTTTTCTTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26155</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>454078</contig_pos>
        <strand>+</strand>
        <context>TTGCAGGAAA[A/T]TCTGAAAAAS</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAA</left_flank>
        <right_flank>TCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCCAAATCCAAGCTCGCAATCACTCAAAACTAAATTTAAACTGTGCGCGCGCCGAGCGGGATAGCGGAGTGTCGTTGCGTGGTTAGAGGGAACCTTTAGAAGGAGTTGGAGGGTAGATGCACCAGGCAACTAATAGTTTAAAAATTAGTACACAAGCTCAGGTTTTAACAAAAAAATTTTGGGTCCCACCACGAAAACTTAAAAATGGAAATAATGGCATAAAAATTAGAACTTTTGGAATCAGAGCAAATACAAATACTTAAATTGAATTTGTTATGTTTCGAGTATCAAAATGAGTGTTTTCTTTAGGGGTAAAAGACCGTCACTTGTTAAATTTTGAGCGGACACTGGAAATATCCTCAAATTAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACCGACCACGACTAGGGCACCAAGAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGA</canonical>
            <polymorphic>AGCCAAATCCAAGCTCGCAATCACTCAAAACTAAATTTAAACTGTGCGCGCGCCGAGCGGGATAGCGGAGTGTCGTTGCGTGGTTAGAGGGAACCTTTAGAAGGAGTTGGAGGGTAGATGCACCAGGCAACTAATAGTTTAAAAATTAGTACACAAGCTCAGGTTTTAACAAAAAAATTTTGGGTCCCACCACGAAAACTTAAAAATGGAAATAATGGCATAAAAATTAGAACTTTTGGAATCAGAGCAAATACAAATACTTAAATTGAATTTGTTATGTTTCGAGTATCAAAATGAGTGTTTTCTTTAGGGGTAAAAGACCGTCACTTGTTAAATTTTGAGCGGACACTGGAAATATCCTCAAATTAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAAWTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACCGACCACGACTAGGGCACCAAGAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>225 208 164 142 93 65 49 33 21</canonical_bands>
                <polymorphic_bands>389 208 142 93 65 49 33 21</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>176 129 123 110 71 65 49 49 39 33 32 30 29 21 20 11 8 5</canonical_bands>
                <polymorphic_bands>176 129 123 110 71 65 49 49 40 39 33 32 30 21 20 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATGTTTTGCTTGCTAAGAAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGAAAGATGTTCTAGGATTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAAT</canonical_amplicon>
		<polymorphic_amplicon>TAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAAWTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26156</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>454088</contig_pos>
        <strand>+</strand>
        <context>WTCTGAAAAA[C/G]GTAAGTATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAA</left_flank>
        <right_flank>GTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCTCGCAATCACTCAAAACTAAATTTAAACTGTGCGCGCGCCGAGCGGGATAGCGGAGTGTCGTTGCGTGGTTAGAGGGAACCTTTAGAAGGAGTTGGAGGGTAGATGCACCAGGCAACTAATAGTTTAAAAATTAGTACACAAGCTCAGGTTTTAACAAAAAAATTTTGGGTCCCACCACGAAAACTTAAAAATGGAAATAATGGCATAAAAATTAGAACTTTTGGAATCAGAGCAAATACAAATACTTAAATTGAATTTGTTATGTTTCGAGTATCAAAATGAGTGTTTTCTTTAGGGGTAAAAGACCGTCACTTGTTAAATTTTGAGCGGACACTGGAAATATCCTCAAATTAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACCGACCACGACTAGGGCACCAAGAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGC</canonical>
            <polymorphic>AAGCTCGCAATCACTCAAAACTAAATTTAAACTGTGCGCGCGCCGAGCGGGATAGCGGAGTGTCGTTGCGTGGTTAGAGGGAACCTTTAGAAGGAGTTGGAGGGTAGATGCACCAGGCAACTAATAGTTTAAAAATTAGTACACAAGCTCAGGTTTTAACAAAAAAATTTTGGGTCCCACCACGAAAACTTAAAAATGGAAATAATGGCATAAAAATTAGAACTTTTGGAATCAGAGCAAATACAAATACTTAAATTGAATTTGTTATGTTTCGAGTATCAAAATGAGTGTTTTCTTTAGGGGTAAAAGACCGTCACTTGTTAAATTTTGAGCGGACACTGGAAATATCCTCAAATTAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAASGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACCGACCACGACTAGGGCACCAAGAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATGTTTTGCTTGCTAAGAAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGAAAGATGTTCTAGGATTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAAT</canonical_amplicon>
		<polymorphic_amplicon>TAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAASGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26157</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>454104</contig_pos>
        <strand>+</strand>
        <context>TATAAAAAAA[C/T]AATTTTTCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAA</left_flank>
        <right_flank>AATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACTAAATTTAAACTGTGCGCGCGCCGAGCGGGATAGCGGAGTGTCGTTGCGTGGTTAGAGGGAACCTTTAGAAGGAGTTGGAGGGTAGATGCACCAGGCAACTAATAGTTTAAAAATTAGTACACAAGCTCAGGTTTTAACAAAAAAATTTTGGGTCCCACCACGAAAACTTAAAAATGGAAATAATGGCATAAAAATTAGAACTTTTGGAATCAGAGCAAATACAAATACTTAAATTGAATTTGTTATGTTTCGAGTATCAAAATGAGTGTTTTCTTTAGGGGTAAAAGACCGTCACTTGTTAAATTTTGAGCGGACACTGGAAATATCCTCAAATTAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACCGACCACGACTAGGGCACCAAGAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCT</canonical>
            <polymorphic>AAAACTAAATTTAAACTGTGCGCGCGCCGAGCGGGATAGCGGAGTGTCGTTGCGTGGTTAGAGGGAACCTTTAGAAGGAGTTGGAGGGTAGATGCACCAGGCAACTAATAGTTTAAAAATTAGTACACAAGCTCAGGTTTTAACAAAAAAATTTTGGGTCCCACCACGAAAACTTAAAAATGGAAATAATGGCATAAAAATTAGAACTTTTGGAATCAGAGCAAATACAAATACTTAAATTGAATTTGTTATGTTTCGAGTATCAAAATGAGTGTTTTCTTTAGGGGTAAAAGACCGTCACTTGTTAAATTTTGAGCGGACACTGGAAATATCCTCAAATTAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAAYAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACCGACCACGACTAGGGCACCAAGAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATGTTTTGCTTGCTAAGAAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGAAAGATGTTCTAGGATTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAAT</canonical_amplicon>
		<polymorphic_amplicon>TAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAAYAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26158</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>454122</contig_pos>
        <strand>+</strand>
        <context>CAGAGTTCGC[G/T]CCAATTTGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGC</left_flank>
        <right_flank>CCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCGCGCGCCGAGCGGGATAGCGGAGTGTCGTTGCGTGGTTAGAGGGAACCTTTAGAAGGAGTTGGAGGGTAGATGCACCAGGCAACTAATAGTTTAAAAATTAGTACACAAGCTCAGGTTTTAACAAAAAAATTTTGGGTCCCACCACGAAAACTTAAAAATGGAAATAATGGCATAAAAATTAGAACTTTTGGAATCAGAGCAAATACAAATACTTAAATTGAATTTGTTATGTTTCGAGTATCAAAATGAGTGTTTTCTTTAGGGGTAAAAGACCGTCACTTGTTAAATTTTGAGCGGACACTGGAAATATCCTCAAATTAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACCGACCACGACTAGGGCACCAAGAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCTCACGCCGCAGCTGCGGCC</canonical>
            <polymorphic>TGCGCGCGCCGAGCGGGATAGCGGAGTGTCGTTGCGTGGTTAGAGGGAACCTTTAGAAGGAGTTGGAGGGTAGATGCACCAGGCAACTAATAGTTTAAAAATTAGTACACAAGCTCAGGTTTTAACAAAAAAATTTTGGGTCCCACCACGAAAACTTAAAAATGGAAATAATGGCATAAAAATTAGAACTTTTGGAATCAGAGCAAATACAAATACTTAAATTGAATTTGTTATGTTTCGAGTATCAAAATGAGTGTTTTCTTTAGGGGTAAAAGACCGTCACTTGTTAAATTTTGAGCGGACACTGGAAATATCCTCAAATTAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCKCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACCGACCACGACTAGGGCACCAAGAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCTCACGCCGCAGCTGCGGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATGTTTTGCTTGCTAAGAAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGAAAGATGTTCTAGGATTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAAT</canonical_amplicon>
		<polymorphic_amplicon>TAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCKCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26159</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>454147</contig_pos>
        <strand>+</strand>
        <context>GCTAGAGAAA[C/T]CCCCTTCATA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAA</left_flank>
        <right_flank>CCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTCGTTGCGTGGTTAGAGGGAACCTTTAGAAGGAGTTGGAGGGTAGATGCACCAGGCAACTAATAGTTTAAAAATTAGTACACAAGCTCAGGTTTTAACAAAAAAATTTTGGGTCCCACCACGAAAACTTAAAAATGGAAATAATGGCATAAAAATTAGAACTTTTGGAATCAGAGCAAATACAAATACTTAAATTGAATTTGTTATGTTTCGAGTATCAAAATGAGTGTTTTCTTTAGGGGTAAAAGACCGTCACTTGTTAAATTTTGAGCGGACACTGGAAATATCCTCAAATTAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACCGACCACGACTAGGGCACCAAGAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCTCACGCCGCAGCTGCGGCCATGTGGGAGGAGCTTCACGTGAAAA</canonical>
            <polymorphic>GTGTCGTTGCGTGGTTAGAGGGAACCTTTAGAAGGAGTTGGAGGGTAGATGCACCAGGCAACTAATAGTTTAAAAATTAGTACACAAGCTCAGGTTTTAACAAAAAAATTTTGGGTCCCACCACGAAAACTTAAAAATGGAAATAATGGCATAAAAATTAGAACTTTTGGAATCAGAGCAAATACAAATACTTAAATTGAATTTGTTATGTTTCGAGTATCAAAATGAGTGTTTTCTTTAGGGGTAAAAGACCGTCACTTGTTAAATTTTGAGCGGACACTGGAAATATCCTCAAATTAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAAYCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACCGACCACGACTAGGGCACCAAGAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCTCACGCCGCAGCTGCGGCCATGTGGGAGGAGCTTCACGTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGACAACCCTGAAAGCAC</pcr_primer_p1>
		<pcr_primer_p2>AAAAGACTCACTTGACAGAAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAAYCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26160</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>454229</contig_pos>
        <strand>+</strand>
        <context>CGCGCTTTGG[A/G]GMCCASGACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGG</left_flank>
        <right_flank>GCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACAAGCTCAGGTTTTAACAAAAAAATTTTGGGTCCCACCACGAAAACTTAAAAATGGAAATAATGGCATAAAAATTAGAACTTTTGGAATCAGAGCAAATACAAATACTTAAATTGAATTTGTTATGTTTCGAGTATCAAAATGAGTGTTTTCTTTAGGGGTAAAAGACCGTCACTTGTTAAATTTTGAGCGGACACTGGAAATATCCTCAAATTAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACCGACCACGACTAGGGCACCAAGAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCTCACGCCGCAGCTGCGGCCATGTGGGAGGAGCTTCACGTGAAAAGAAATAGAATGAAATACGCAATCACCGAGTGTATATTTTTTAAATAAAGGGAAAGTCACCTAAATGTTTCAAAGTGTTTCTA</canonical>
            <polymorphic>CACAAGCTCAGGTTTTAACAAAAAAATTTTGGGTCCCACCACGAAAACTTAAAAATGGAAATAATGGCATAAAAATTAGAACTTTTGGAATCAGAGCAAATACAAATACTTAAATTGAATTTGTTATGTTTCGAGTATCAAAATGAGTGTTTTCTTTAGGGGTAAAAGACCGTCACTTGTTAAATTTTGAGCGGACACTGGAAATATCCTCAAATTAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGRGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACCGACCACGACTAGGGCACCAAGAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCTCACGCCGCAGCTGCGGCCATGTGGGAGGAGCTTCACGTGAAAAGAAATAGAATGAAATACGCAATCACCGAGTGTATATTTTTTAAATAAAGGGAAAGTCACCTAAATGTTTCAAAGTGTTTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>503 265 232</canonical_bands>
                <polymorphic_bands>768 232</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>270 180 179 132 95 78 25 15 14 6 6</canonical_bands>
                <polymorphic_bands>270 180 179 132 95 78 40 14 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATCCTAGAACATCTTTCAAT</pcr_primer_p1>
		<pcr_primer_p2>AGCAGTTATAACATTCCAGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCT</canonical_amplicon>
		<polymorphic_amplicon>CAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGRGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26161</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>454231</contig_pos>
        <strand>+</strand>
        <context>CGCTTTGGRG[A/C]CCASGACTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAG</left_flank>
        <right_flank>CCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAGCTCAGGTTTTAACAAAAAAATTTTGGGTCCCACCACGAAAACTTAAAAATGGAAATAATGGCATAAAAATTAGAACTTTTGGAATCAGAGCAAATACAAATACTTAAATTGAATTTGTTATGTTTCGAGTATCAAAATGAGTGTTTTCTTTAGGGGTAAAAGACCGTCACTTGTTAAATTTTGAGCGGACACTGGAAATATCCTCAAATTAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACCGACCACGACTAGGGCACCAAGAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCTCACGCCGCAGCTGCGGCCATGTGGGAGGAGCTTCACGTGAAAAGAAATAGAATGAAATACGCAATCACCGAGTGTATATTTTTTAAATAAAGGGAAAGTCACCTAAATGTTTCAAAGTGTTTCTAGT</canonical>
            <polymorphic>CAAGCTCAGGTTTTAACAAAAAAATTTTGGGTCCCACCACGAAAACTTAAAAATGGAAATAATGGCATAAAAATTAGAACTTTTGGAATCAGAGCAAATACAAATACTTAAATTGAATTTGTTATGTTTCGAGTATCAAAATGAGTGTTTTCTTTAGGGGTAAAAGACCGTCACTTGTTAAATTTTGAGCGGACACTGGAAATATCCTCAAATTAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGMCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACCGACCACGACTAGGGCACCAAGAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCTCACGCCGCAGCTGCGGCCATGTGGGAGGAGCTTCACGTGAAAAGAAATAGAATGAAATACGCAATCACCGAGTGTATATTTTTTAAATAAAGGGAAAGTCACCTAAATGTTTCAAAGTGTTTCTAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 265 234</canonical_bands>
                <polymorphic_bands>766 234</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>452 267 235 31 15</canonical_bands>
                <polymorphic_bands>452 282 235 31</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>270 180 179 132 97 78 25 15 14 6 4</canonical_bands>
                <polymorphic_bands>270 180 179 132 97 78 40 14 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATCCTAGAACATCTTTCAAT</pcr_primer_p1>
		<pcr_primer_p2>AGCAGTTATAACATTCCAGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCT</canonical_amplicon>
		<polymorphic_amplicon>CAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGMCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26162</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>454235</contig_pos>
        <strand>+</strand>
        <context>TTGGRGMCCA[C/G]GACTTTTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCA</left_flank>
        <right_flank>GACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCAGGTTTTAACAAAAAAATTTTGGGTCCCACCACGAAAACTTAAAAATGGAAATAATGGCATAAAAATTAGAACTTTTGGAATCAGAGCAAATACAAATACTTAAATTGAATTTGTTATGTTTCGAGTATCAAAATGAGTGTTTTCTTTAGGGGTAAAAGACCGTCACTTGTTAAATTTTGAGCGGACACTGGAAATATCCTCAAATTAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACCGACCACGACTAGGGCACCAAGAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCTCACGCCGCAGCTGCGGCCATGTGGGAGGAGCTTCACGTGAAAAGAAATAGAATGAAATACGCAATCACCGAGTGTATATTTTTTAAATAAAGGGAAAGTCACCTAAATGTTTCAAAGTGTTTCTAGTTTTT</canonical>
            <polymorphic>CTCAGGTTTTAACAAAAAAATTTTGGGTCCCACCACGAAAACTTAAAAATGGAAATAATGGCATAAAAATTAGAACTTTTGGAATCAGAGCAAATACAAATACTTAAATTGAATTTGTTATGTTTCGAGTATCAAAATGAGTGTTTTCTTTAGGGGTAAAAGACCGTCACTTGTTAAATTTTGAGCGGACACTGGAAATATCCTCAAATTAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCASGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACCGACCACGACTAGGGCACCAAGAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCTCACGCCGCAGCTGCGGCCATGTGGGAGGAGCTTCACGTGAAAAGAAATAGAATGAAATACGCAATCACCGAGTGTATATTTTTTAAATAAAGGGAAAGTCACCTAAATGTTTCAAAGTGTTTCTAGTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>502 468 30</canonical_bands>
                <polymorphic_bands>532 468</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>502 468 30</canonical_bands>
                <polymorphic_bands>532 468</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATCCTAGAACATCTTTCAAT</pcr_primer_p1>
		<pcr_primer_p2>AGCAGTTATAACATTCCAGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCT</canonical_amplicon>
		<polymorphic_amplicon>CAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCASGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26163</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>454328</contig_pos>
        <strand>+</strand>
        <context>CTTTCGTTCA[A/G]ACTTGACATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCA</left_flank>
        <right_flank>ACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATT</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATACAAATACTTAAATTGAATTTGTTATGTTTCGAGTATCAAAATGAGTGTTTTCTTTAGGGGTAAAAGACCGTCACTTGTTAAATTTTGAGCGGACACTGGAAATATCCTCAAATTAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACCGACCACGACTAGGGCACCAAGAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCTCACGCCGCAGCTGCGGCCATGTGGGAGGAGCTTCACGTGAAAAGAAATAGAATGAAATACGCAATCACCGAGTGTATATTTTTTAAATAAAGGGAAAGTCACCTAAATGTTTCAAAGTGTTTCTAGTTTTTTGCTTATTTCAGTTGACTTATTCTTTTCTGAAATCAAAGTTTCCTCTGTTGTCTTTTTTAATTTTAAAGTTTTCTTGGCTCTGTTTAAAAAAA</canonical>
            <polymorphic>ATACAAATACTTAAATTGAATTTGTTATGTTTCGAGTATCAAAATGAGTGTTTTCTTTAGGGGTAAAAGACCGTCACTTGTTAAATTTTGAGCGGACACTGGAAATATCCTCAAATTAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCARACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACCGACCACGACTAGGGCACCAAGAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCTCACGCCGCAGCTGCGGCCATGTGGGAGGAGCTTCACGTGAAAAGAAATAGAATGAAATACGCAATCACCGAGTGTATATTTTTTAAATAAAGGGAAAGTCACCTAAATGTTTCAAAGTGTTTCTAGTTTTTTGCTTATTTCAGTTGACTTATTCTTTTCTGAAATCAAAGTTTCCTCTGTTGTCTTTTTTAATTTTAAAGTTTTCTTGGCTCTGTTTAAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>416 253 167 64 47 32 21</canonical_bands>
                <polymorphic_bands>416 253 188 64 47 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATCCTAGAACATCTTTCAAT</pcr_primer_p1>
		<pcr_primer_p2>AGCAGTTATAACATTCCAGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCT</canonical_amplicon>
		<polymorphic_amplicon>CAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCARACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26164</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>454340</contig_pos>
        <strand>+</strand>
        <context>CTTGACATTT[C/T]TGTGTTCCGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTT</left_flank>
        <right_flank>TGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTGAATTTGTTATGTTTCGAGTATCAAAATGAGTGTTTTCTTTAGGGGTAAAAGACCGTCACTTGTTAAATTTTGAGCGGACACTGGAAATATCCTCAAATTAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACCGACCACGACTAGGGCACCAAGAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCTCACGCCGCAGCTGCGGCCATGTGGGAGGAGCTTCACGTGAAAAGAAATAGAATGAAATACGCAATCACCGAGTGTATATTTTTTAAATAAAGGGAAAGTCACCTAAATGTTTCAAAGTGTTTCTAGTTTTTTGCTTATTTCAGTTGACTTATTCTTTTCTGAAATCAAAGTTTCCTCTGTTGTCTTTTTTAATTTTAAAGTTTTCTTGGCTCTGTTTAAAAAAATAAGACGAAAGT</canonical>
            <polymorphic>AAATTGAATTTGTTATGTTTCGAGTATCAAAATGAGTGTTTTCTTTAGGGGTAAAAGACCGTCACTTGTTAAATTTTGAGCGGACACTGGAAATATCCTCAAATTAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTYTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACCGACCACGACTAGGGCACCAAGAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCTCACGCCGCAGCTGCGGCCATGTGGGAGGAGCTTCACGTGAAAAGAAATAGAATGAAATACGCAATCACCGAGTGTATATTTTTTAAATAAAGGGAAAGTCACCTAAATGTTTCAAAGTGTTTCTAGTTTTTTGCTTATTTCAGTTGACTTATTCTTTTCTGAAATCAAAGTTTCCTCTGTTGTCTTTTTTAATTTTAAAGTTTTCTTGGCTCTGTTTAAAAAAATAAGACGAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAATCCTAGAACATCTTTCAAT</pcr_primer_p1>
		<pcr_primer_p2>AGCAGTTATAACATTCCAGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCT</canonical_amplicon>
		<polymorphic_amplicon>CAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTYTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26165</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>454378</contig_pos>
        <strand>+</strand>
        <context>TGAAATTTAT[C/T]AWTTTCYCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTAT</left_flank>
        <right_flank>AATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATG</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCTTTAGGGGTAAAAGACCGTCACTTGTTAAATTTTGAGCGGACACTGGAAATATCCTCAAATTAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACCGACCACGACTAGGGCACCAAGAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCTCACGCCGCAGCTGCGGCCATGTGGGAGGAGCTTCACGTGAAAAGAAATAGAATGAAATACGCAATCACCGAGTGTATATTTTTTAAATAAAGGGAAAGTCACCTAAATGTTTCAAAGTGTTTCTAGTTTTTTGCTTATTTCAGTTGACTTATTCTTTTCTGAAATCAAAGTTTCCTCTGTTGTCTTTTTTAATTTTAAAGTTTTCTTGGCTCTGTTTAAAAAAATAAGACGAAAGTGTGACTTGTGACTTTTCAAGAAAGCAAAGAAACAACTT</canonical>
            <polymorphic>TTTTCTTTAGGGGTAAAAGACCGTCACTTGTTAAATTTTGAGCGGACACTGGAAATATCCTCAAATTAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATYAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACCGACCACGACTAGGGCACCAAGAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCTCACGCCGCAGCTGCGGCCATGTGGGAGGAGCTTCACGTGAAAAGAAATAGAATGAAATACGCAATCACCGAGTGTATATTTTTTAAATAAAGGGAAAGTCACCTAAATGTTTCAAAGTGTTTCTAGTTTTTTGCTTATTTCAGTTGACTTATTCTTTTCTGAAATCAAAGTTTCCTCTGTTGTCTTTTTTAATTTTAAAGTTTTCTTGGCTCTGTTTAAAAAAATAAGACGAAAGTGTGACTTGTGACTTTTCAAGAAAGCAAAGAAACAACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 314 119 66</canonical_bands>
                <polymorphic_bands>815 119 66</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>314 182 128 106 79 58 40 35 31 21 6</canonical_bands>
                <polymorphic_bands>496 128 106 79 58 40 35 31 21 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATCTTTCAATAATAATCCTGGT</pcr_primer_p1>
		<pcr_primer_p2>GATTCCATACCAAAAGCAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATC</canonical_amplicon>
		<polymorphic_amplicon>ACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATYAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26166</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>454380</contig_pos>
        <strand>+</strand>
        <context>AAATTTATYA[A/T]TTTCYCATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTA</left_flank>
        <right_flank>TTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTTAGGGGTAAAAGACCGTCACTTGTTAAATTTTGAGCGGACACTGGAAATATCCTCAAATTAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACCGACCACGACTAGGGCACCAAGAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCTCACGCCGCAGCTGCGGCCATGTGGGAGGAGCTTCACGTGAAAAGAAATAGAATGAAATACGCAATCACCGAGTGTATATTTTTTAAATAAAGGGAAAGTCACCTAAATGTTTCAAAGTGTTTCTAGTTTTTTGCTTATTTCAGTTGACTTATTCTTTTCTGAAATCAAAGTTTCCTCTGTTGTCTTTTTTAATTTTAAAGTTTTCTTGGCTCTGTTTAAAAAAATAAGACGAAAGTGTGACTTGTGACTTTTCAAGAAAGCAAAGAAACAACTTTA</canonical>
            <polymorphic>TTCTTTAGGGGTAAAAGACCGTCACTTGTTAAATTTTGAGCGGACACTGGAAATATCCTCAAATTAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAWTTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACCGACCACGACTAGGGCACCAAGAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCTCACGCCGCAGCTGCGGCCATGTGGGAGGAGCTTCACGTGAAAAGAAATAGAATGAAATACGCAATCACCGAGTGTATATTTTTTAAATAAAGGGAAAGTCACCTAAATGTTTCAAAGTGTTTCTAGTTTTTTGCTTATTTCAGTTGACTTATTCTTTTCTGAAATCAAAGTTTCCTCTGTTGTCTTTTTTAATTTTAAAGTTTTCTTGGCTCTGTTTAAAAAAATAAGACGAAAGTGTGACTTGTGACTTTTCAAGAAAGCAAAGAAACAACTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 314 119 64</canonical_bands>
                <polymorphic_bands>817 119 64</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>314 182 128 106 79 60 40 35 29 21 6</canonical_bands>
                <polymorphic_bands>496 128 106 79 60 40 35 29 21 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>345 176 123 86 71 49 31 30 29 21 20 11 8</canonical_bands>
                <polymorphic_bands>345 176 123 86 79 49 31 30 29 21 20 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATCTTTCAATAATAATCCTGGT</pcr_primer_p1>
		<pcr_primer_p2>GATTCCATACCAAAAGCAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATC</canonical_amplicon>
		<polymorphic_amplicon>ACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAWTTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26167</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>454385</contig_pos>
        <strand>+</strand>
        <context>TATYAWTTTC[C/T]CATAAGAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTC</left_flank>
        <right_flank>CATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGGGTAAAAGACCGTCACTTGTTAAATTTTGAGCGGACACTGGAAATATCCTCAAATTAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACCGACCACGACTAGGGCACCAAGAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCTCACGCCGCAGCTGCGGCCATGTGGGAGGAGCTTCACGTGAAAAGAAATAGAATGAAATACGCAATCACCGAGTGTATATTTTTTAAATAAAGGGAAAGTCACCTAAATGTTTCAAAGTGTTTCTAGTTTTTTGCTTATTTCAGTTGACTTATTCTTTTCTGAAATCAAAGTTTCCTCTGTTGTCTTTTTTAATTTTAAAGTTTTCTTGGCTCTGTTTAAAAAAATAAGACGAAAGTGTGACTTGTGACTTTTCAAGAAAGCAAAGAAACAACTTTAAAATA</canonical>
            <polymorphic>TAGGGGTAAAAGACCGTCACTTGTTAAATTTTGAGCGGACACTGGAAATATCCTCAAATTAATGTTTTGCTTGCTAAGAAGTCCCAAATGTGCCAAAACACGAAATATGCCAAATATAAGCTTGCGGGGTCTCATTTTTAAGTTCACAGTTTAGACAACCCTGAAAGCACGTTCATATTAATTTGCAGGAAATTCTGAAAAAGGTAAGTATAAAAAAACAATTTTTCAGAGTTCGCTCCAATTTGATCACAGCTAGAGAAATCCCCTTCATATCAGACAAGACATGCCAAATCCTAGAACATCTTTCAATAATAATCCTGGTGCATGGGGCCACGCGCTTTGGAGCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCYCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACCGACCACGACTAGGGCACCAAGAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCTCACGCCGCAGCTGCGGCCATGTGGGAGGAGCTTCACGTGAAAAGAAATAGAATGAAATACGCAATCACCGAGTGTATATTTTTTAAATAAAGGGAAAGTCACCTAAATGTTTCAAAGTGTTTCTAGTTTTTTGCTTATTTCAGTTGACTTATTCTTTTCTGAAATCAAAGTTTCCTCTGTTGTCTTTTTTAATTTTAAAGTTTTCTTGGCTCTGTTTAAAAAAATAAGACGAAAGTGTGACTTGTGACTTTTCAAGAAAGCAAAGAAACAACTTTAAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTTTTTCATTTGGGTCAG</pcr_primer_p1>
		<pcr_primer_p2>GGTGACCTGATACATTTCATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACC</canonical_amplicon>
		<polymorphic_amplicon>GACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCYCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26168</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>454729</contig_pos>
        <strand></strand>
        <context>aagtgtttct[A/T]gttttttgct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATATTTTTTAAATAAAGGGAAAGTCACCTAAATGTTTCAAAGTGTTTCT</left_flank>
        <right_flank>GTTTTTTGCTTATTTCAGTTGACTTATTCTTTTCTGAAATCAAAGTTTCC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACCGACCACGACTAGGGCACCAAGAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCTCACGCCGCAGCTGCGGCCATGTGGGAGGAGCTTCACGTGAAAAGAAATAGAATGAAATACGCAATCACCGAGTGTATATTTTTTAAATAAAGGGAAAGTCACCTAAATGTTTCAAAGTGTTTCTAGTTTTTTGCTTATTTCAGTTGACTTATTCTTTTCTGAAATCAAAGTTTCCTCTGTTGTCTTTTTTAATTTTAAAGTTTTCTTGGCTCTGTTTAAAAAAATAAGACGAAAGTGTGACTTGTGACTTTTCAAGAAAGCAAAGAAACAACTTTAAAATATAGTGTTTTTAAGGGTTCTTTTTGATAGGATATTTAATTTTTCAGGATTTCTTGATTTGAAATTTGTTTTTTGAAATTTCACTTTAATATACGATTTTGTTCTATTAGAATTTATCAACTAATTATTTCCTCCACATTTTCATGAAAAATTTAAAGTGTTGCTCGACTGAAAACCGGTACGGAAGATGCATGTGGAATTTGTCTAAAAATCGGATGAGTCAAATAAAAATAACAGGTGACGATGTGAACACGGGCGTCCAAGAAGAATGGGCGAAGAAGGAGAATATATGCGAAATATGAACTGCGAAGGAGTTCACCCATCTGAAAAAATTGTATTAGCGACT</canonical>
            <polymorphic>GCCCAGGACTTTTTCATTTGGGTCAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACCGACCACGACTAGGGCACCAAGAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCTCACGCCGCAGCTGCGGCCATGTGGGAGGAGCTTCACGTGAAAAGAAATAGAATGAAATACGCAATCACCGAGTGTATATTTTTTAAATAAAGGGAAAGTCACCTAAATGTTTCAAAGTGTTTCTWGTTTTTTGCTTATTTCAGTTGACTTATTCTTTTCTGAAATCAAAGTTTCCTCTGTTGTCTTTTTTAATTTTAAAGTTTTCTTGGCTCTGTTTAAAAAAATAAGACGAAAGTGTGACTTGTGACTTTTCAAGAAAGCAAAGAAACAACTTTAAAATATAGTGTTTTTAAGGGTTCTTTTTGATAGGATATTTAATTTTTCAGGATTTCTTGATTTGAAATTTGTTTTTTGAAATTTCACTTTAATATACGATTTTGTTCTATTAGAATTTATCAACTAATTATTTCCTCCACATTTTCATGAAAAATTTAAAGTGTTGCTCGACTGAAAACCGGTACGGAAGATGCATGTGGAATTTGTCTAAAAATCGGATGAGTCAAATAAAAATAACAGGTGACGATGTGAACACGGGCGTCCAAGAAGAATGGGCGAAGAAGGAGAATATATGCGAAATATGAACTGCGAAGGAGTTCACCCATCTGAAAAAATTGTATTAGCGACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 261 214 23</canonical_bands>
                <polymorphic_bands>716 261 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACAAGACCGCTAGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTTGAAAAGTCACAAGTCACAC</pcr_primer_p2>
		<pcr_amplicon_size>359</pcr_amplicon_size>
		<canonical_amplicon>GAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCTCACGCCGCAGCTGCGGCCATGTGGGAGGAGCTTCACGTGAAAAGAAATAGAATGAAATACGCAATCACCGAGTGTATATTTTTTAAATAAAGGGAAAGTCACCTAAATGTTTCAAAGTGTTTCTAGTTTTTTGCTTATTTCAGTTGACTTATTCTTTTCTGAAATCAAAGTTTCCTCTGTTGTCTTTTTTAATTTTAAAGTTTTCTTGGCTCTGTTTAAAAAAATAAGACGAAAGTGTGACTTGTGACTTTTCAAG</canonical_amplicon>
		<polymorphic_amplicon>GAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCTCACGCCGCAGCTGCGGCCATGTGGGAGGAGCTTCACGTGAAAAGAAATAGAATGAAATACGCAATCACCGAGTGTATATTTTTTAAATAAAGGGAAAGTCACCTAAATGTTTCAAAGTGTTTCTWGTTTTTTGCTTATTTCAGTTGACTTATTCTTTTCTGAAATCAAAGTTTCCTCTGTTGTCTTTTTTAATTTTAAAGTTTTCTTGGCTCTGTTTAAAAAAATAAGACGAAAGTGTGACTTGTGACTTTTCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26169</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>454752</contig_pos>
        <strand></strand>
        <context>tttcagttga[C/T]ttattctttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCACCTAAATGTTTCAAAGTGTTTCTAGTTTTTTGCTTATTTCAGTTGA</left_flank>
        <right_flank>TTATTCTTTTCTGAAATCAAAGTTTCCTCTGTTGTCTTTTTTAATTTTAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACCGACCACGACTAGGGCACCAAGAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCTCACGCCGCAGCTGCGGCCATGTGGGAGGAGCTTCACGTGAAAAGAAATAGAATGAAATACGCAATCACCGAGTGTATATTTTTTAAATAAAGGGAAAGTCACCTAAATGTTTCAAAGTGTTTCTAGTTTTTTGCTTATTTCAGTTGACTTATTCTTTTCTGAAATCAAAGTTTCCTCTGTTGTCTTTTTTAATTTTAAAGTTTTCTTGGCTCTGTTTAAAAAAATAAGACGAAAGTGTGACTTGTGACTTTTCAAGAAAGCAAAGAAACAACTTTAAAATATAGTGTTTTTAAGGGTTCTTTTTGATAGGATATTTAATTTTTCAGGATTTCTTGATTTGAAATTTGTTTTTTGAAATTTCACTTTAATATACGATTTTGTTCTATTAGAATTTATCAACTAATTATTTCCTCCACATTTTCATGAAAAATTTAAAGTGTTGCTCGACTGAAAACCGGTACGGAAGATGCATGTGGAATTTGTCTAAAAATCGGATGAGTCAAATAAAAATAACAGGTGACGATGTGAACACGGGCGTCCAAGAAGAATGGGCGAAGAAGGAGAATATATGCGAAATATGAACTGCGAAGGAGTTCACCCATCTGAAAAAATTGTATTAGCGACTTTAAAGATATATTTTAAACTTCA</canonical>
            <polymorphic>CAGCCTTTCCAGATTTCTGTCAAGTGAGTCTTTTTTTGTATTATTTAGAATTCAATCAAAACTTCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACCGACCACGACTAGGGCACCAAGAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCTCACGCCGCAGCTGCGGCCATGTGGGAGGAGCTTCACGTGAAAAGAAATAGAATGAAATACGCAATCACCGAGTGTATATTTTTTAAATAAAGGGAAAGTCACCTAAATGTTTCAAAGTGTTTCTAGTTTTTTGCTTATTTCAGTTGAYTTATTCTTTTCTGAAATCAAAGTTTCCTCTGTTGTCTTTTTTAATTTTAAAGTTTTCTTGGCTCTGTTTAAAAAAATAAGACGAAAGTGTGACTTGTGACTTTTCAAGAAAGCAAAGAAACAACTTTAAAATATAGTGTTTTTAAGGGTTCTTTTTGATAGGATATTTAATTTTTCAGGATTTCTTGATTTGAAATTTGTTTTTTGAAATTTCACTTTAATATACGATTTTGTTCTATTAGAATTTATCAACTAATTATTTCCTCCACATTTTCATGAAAAATTTAAAGTGTTGCTCGACTGAAAACCGGTACGGAAGATGCATGTGGAATTTGTCTAAAAATCGGATGAGTCAAATAAAAATAACAGGTGACGATGTGAACACGGGCGTCCAAGAAGAATGGGCGAAGAAGGAGAATATATGCGAAATATGAACTGCGAAGGAGTTCACCCATCTGAAAAAATTGTATTAGCGACTTTAAAGATATATTTTAAACTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>382 351 146 68 53</canonical_bands>
                <polymorphic_bands>733 146 68 53</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACAAGACCGCTAGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTTGAAAAGTCACAAGTCACAC</pcr_primer_p2>
		<pcr_amplicon_size>359</pcr_amplicon_size>
		<canonical_amplicon>GAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCTCACGCCGCAGCTGCGGCCATGTGGGAGGAGCTTCACGTGAAAAGAAATAGAATGAAATACGCAATCACCGAGTGTATATTTTTTAAATAAAGGGAAAGTCACCTAAATGTTTCAAAGTGTTTCTAGTTTTTTGCTTATTTCAGTTGACTTATTCTTTTCTGAAATCAAAGTTTCCTCTGTTGTCTTTTTTAATTTTAAAGTTTTCTTGGCTCTGTTTAAAAAAATAAGACGAAAGTGTGACTTGTGACTTTTCAAG</canonical_amplicon>
		<polymorphic_amplicon>GAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCTCACGCCGCAGCTGCGGCCATGTGGGAGGAGCTTCACGTGAAAAGAAATAGAATGAAATACGCAATCACCGAGTGTATATTTTTTAAATAAAGGGAAAGTCACCTAAATGTTTCAAAGTGTTTCTAGTTTTTTGCTTATTTCAGTTGAYTTATTCTTTTCTGAAATCAAAGTTTCCTCTGTTGTCTTTTTTAATTTTAAAGTTTTCTTGGCTCTGTTTAAAAAAATAAGACGAAAGTGTGACTTGTGACTTTTCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26170</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>454815</contig_pos>
        <strand></strand>
        <context>ttttcttggc[T/A]ctgtttaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GAAATCAAAGTTTCCTCTGTTGTCTTTTTTAATTTTAAAGTTTTCTTGGC</left_flank>
        <right_flank>CTGTTTAAAAAAATAAGACGAAAGTGTGACTTGTGACTTTTCAAGAAAGC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACCGACCACGACTAGGGCACCAAGAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCTCACGCCGCAGCTGCGGCCATGTGGGAGGAGCTTCACGTGAAAAGAAATAGAATGAAATACGCAATCACCGAGTGTATATTTTTTAAATAAAGGGAAAGTCACCTAAATGTTTCAAAGTGTTTCTAGTTTTTTGCTTATTTCAGTTGACTTATTCTTTTCTGAAATCAAAGTTTCCTCTGTTGTCTTTTTTAATTTTAAAGTTTTCTTGGCTCTGTTTAAAAAAATAAGACGAAAGTGTGACTTGTGACTTTTCAAGAAAGCAAAGAAACAACTTTAAAATATAGTGTTTTTAAGGGTTCTTTTTGATAGGATATTTAATTTTTCAGGATTTCTTGATTTGAAATTTGTTTTTTGAAATTTCACTTTAATATACGATTTTGTTCTATTAGAATTTATCAACTAATTATTTCCTCCACATTTTCATGAAAAATTTAAAGTGTTGCTCGACTGAAAACCGGTACGGAAGATGCATGTGGAATTTGTCTAAAAATCGGATGAGTCAAATAAAAATAACAGGTGACGATGTGAACACGGGCGTCCAAGAAGAATGGGCGAAGAAGGAGAATATATGCGAAATATGAACTGCGAAGGAGTTCACCCATCTGAAAAAATTGTATTAGCGACTTTAAAGATATATTTTAAACTTCAGACTCGATAATTAAATTTCCTAAATTCTCAGTTTTTTTTAAATTCAAATATTTCTTTTTCTTT</canonical>
            <polymorphic>TCCTTTCGTTCAGACTTGACATTTCTGTGTTCCGAATTTCTGCTAACAACGTTGAAATTTATTAATTTCTCATAAGAACTGTGAACTGGAATGTTATAACTGCTTTTGGTATGGAATCAGCCTATTGGATGTCAAATTGGGTGGAAATGAAATGTATCAGGTCACCGACCACGACTAGGGCACCAAGAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCTCACGCCGCAGCTGCGGCCATGTGGGAGGAGCTTCACGTGAAAAGAAATAGAATGAAATACGCAATCACCGAGTGTATATTTTTTAAATAAAGGGAAAGTCACCTAAATGTTTCAAAGTGTTTCTAGTTTTTTGCTTATTTCAGTTGACTTATTCTTTTCTGAAATCAAAGTTTCCTCTGTTGTCTTTTTTAATTTTAAAGTTTTCTTGGCWCTGTTTAAAAAAATAAGACGAAAGTGTGACTTGTGACTTTTCAAGAAAGCAAAGAAACAACTTTAAAATATAGTGTTTTTAAGGGTTCTTTTTGATAGGATATTTAATTTTTCAGGATTTCTTGATTTGAAATTTGTTTTTTGAAATTTCACTTTAATATACGATTTTGTTCTATTAGAATTTATCAACTAATTATTTCCTCCACATTTTCATGAAAAATTTAAAGTGTTGCTCGACTGAAAACCGGTACGGAAGATGCATGTGGAATTTGTCTAAAAATCGGATGAGTCAAATAAAAATAACAGGTGACGATGTGAACACGGGCGTCCAAGAAGAATGGGCGAAGAAGGAGAATATATGCGAAATATGAACTGCGAAGGAGTTCACCCATCTGAAAAAATTGTATTAGCGACTTTAAAGATATATTTTAAACTTCAGACTCGATAATTAAATTTCCTAAATTCTCAGTTTTTTTTAAATTCAAATATTTCTTTTTCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>502 179 179 120 14 6</canonical_bands>
                <polymorphic_bands>681 179 120 14 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACAAGACCGCTAGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTTTGCTTTCTTGAAAAGTCAC</pcr_primer_p2>
		<pcr_amplicon_size>368</pcr_amplicon_size>
		<canonical_amplicon>GAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCTCACGCCGCAGCTGCGGCCATGTGGGAGGAGCTTCACGTGAAAAGAAATAGAATGAAATACGCAATCACCGAGTGTATATTTTTTAAATAAAGGGAAAGTCACCTAAATGTTTCAAAGTGTTTCTAGTTTTTTGCTTATTTCAGTTGACTTATTCTTTTCTGAAATCAAAGTTTCCTCTGTTGTCTTTTTTAATTTTAAAGTTTTCTTGGCTCTGTTTAAAAAAATAAGACGAAAGTGTGACTTGTGACTTTTCAAGAAAGCAAAG</canonical_amplicon>
		<polymorphic_amplicon>GAACAAGACCGCTAGGAAATGGGAATGGCAGTGGTCATGGACTACGCTGGAATCTCATTAAATATAATAATCGTGGAAGTGCGCGGCACAGTTGCAAATACCTCACGCCGCAGCTGCGGCCATGTGGGAGGAGCTTCACGTGAAAAGAAATAGAATGAAATACGCAATCACCGAGTGTATATTTTTTAAATAAAGGGAAAGTCACCTAAATGTTTCAAAGTGTTTCTAGTTTTTTGCTTATTTCAGTTGACTTATTCTTTTCTGAAATCAAAGTTTCCTCTGTTGTCTTTTTTAATTTTAAAGTTTTCTTGGCWCTGTTTAAAAAAATAAGACGAAAGTGTGACTTGTGACTTTTCAAGAAAGCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26171</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>469246</contig_pos>
        <strand>+</strand>
        <context>agtaaactaa[A/G]caaaacaaga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTAATATAAATAAGTTTTCGACTTGTCTGAAGAAATCAGAGTAAACTAA</left_flank>
        <right_flank>CAAAACAAGATCTTCAATTTTGTGAACGTTTTTTTAGTCCAGTGTCTAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAATTTTCGCTTTTACAGGTACCGAAACATCTCCAAAACAAAATCGATCATCTTCTCCGGAATTACAATTTTGACCTTTTCAATTTTCACTACTCTCTATGGATTTTTTACAACAAACGATGATACAATATACTCCTGTTCTCCTCCATTTGCATTCGGACCCAAAGCTGGTGTCCTCTACAAGTACCTATTTATAGGTCTGGCGTTAATTATCATAATTATATACTGTATAATTATAAGATCCTTCAAAACTCGAAACATATACACTACTAGTCATATGAGCTTCAAGAAAACTATTATACGACTCCAACTGACCGTTTTGATATTTTTCTTATCTTGGTTCGTTAGTCAGGTGCTTGGTTTGGTTATTCTAGAAATTTCAAATTATCCGAAATGGCTTGGAATGCTTTTGGTGCATAATGTGAGTATCCCAAAATATACTTTGAAAAGTAATATAAATAAGTTTTCGACTTGTCTGAAGAAATCAGAGTAAACTAAACAAAACAAGATCTTCAATTTTGTGAACGTTTTTTTAGTCCAGTGTCTAAAATTTTCAGACAAATTTAAACTTATAGACTACTTTCCCAGTACTATAAAGTTGTCTATTATTCACTGAAAAAATTAAATTATGATTTTAAAAAGTTTTCAGGTGCTCTTTCTCTGCTTATCCTATAGCAACACATTCTACGTCACCTTGCTCAAAAGCAAAGAGTATAGAGATCAATTTTGTAGTTTGTGGTGTCTACGAAAATCCACGTCTTCTTGGTGAATGTTCTAATTGTAAGTTTTTATTGATCCAAAAGGATCCAATAACGTCGCAAAATCAGGCAAAAAAGAAAACAAAAGAAAAAACCACAAGAGGGAACGAACTAACGCTCCGTGCCCACTGGCGCCAGCACACATCCCCGACACCACACAGGTGATTCGTGATTAACCAATTACAGAGATAGAGAAAATCGACTTTGAACATCGCTATTTTTGCACTGAAGATGCGATTTT</canonical>
            <polymorphic>ACAATTTTCGCTTTTACAGGTACCGAAACATCTCCAAAACAAAATCGATCATCTTCTCCGGAATTACAATTTTGACCTTTTCAATTTTCACTACTCTCTATGGATTTTTTACAACAAACGATGATACAATATACTCCTGTTCTCCTCCATTTGCATTCGGACCCAAAGCTGGTGTCCTCTACAAGTACCTATTTATAGGTCTGGCGTTAATTATCATAATTATATACTGTATAATTATAAGATCCTTCAAAACTCGAAACATATACACTACTAGTCATATGAGCTTCAAGAAAACTATTATACGACTCCAACTGACCGTTTTGATATTTTTCTTATCTTGGTTCGTTAGTCAGGTGCTTGGTTTGGTTATTCTAGAAATTTCAAATTATCCGAAATGGCTTGGAATGCTTTTGGTGCATAATGTGAGTATCCCAAAATATACTTTGAAAAGTAATATAAATAAGTTTTCGACTTGTCTGAAGAAATCAGAGTAAACTAARCAAAACAAGATCTTCAATTTTGTGAACGTTTTTTTAGTCCAGTGTCTAAAATTTTCAGACAAATTTAAACTTATAGACTACTTTCCCAGTACTATAAAGTTGTCTATTATTCACTGAAAAAATTAAATTATGATTTTAAAAAGTTTTCAGGTGCTCTTTCTCTGCTTATCCTATAGCAACACATTCTACGTCACCTTGCTCAAAAGCAAAGAGTATAGAGATCAATTTTGTAGTTTGTGGTGTCTACGAAAATCCACGTCTTCTTGGTGAATGTTCTAATTGTAAGTTTTTATTGATCCAAAAGGATCCAATAACGTCGCAAAATCAGGCAAAAAAGAAAACAAAAGAAAAAACCACAAGAGGGAACGAACTAACGCTCCGTGCCCACTGGCGCCAGCACACATCCCCGACACCACACAGGTGATTCGTGATTAACCAATTACAGAGATAGAGAAAATCGACTTTGAACATCGCTATTTTTGCACTGAAGATGCGATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTGGTGCATAATGTGAGTAT</pcr_primer_p1>
		<pcr_primer_p2>CACCTGAAAACTTTTTAAAATCA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTTTTGGTGCATAATGTGAGTATCCCAAAATATACTTTGAAAAGTAATATAAATAAGTTTTCGACTTGTCTGAAGAAATCAGAGTAAACTAAACAAAACAAGATCTTCAATTTTGTGAACGTTTTTTTAGTCCAGTGTCTAAAATTTTCAGACAAATTTAAACTTATAGACTACTTTCCCAGTACTATAAAGTTGTCTATTATTCACTGAAAAAATTAAATTATGATTTTAAAAAGTTTTCAGGTG</canonical_amplicon>
		<polymorphic_amplicon>CTTTTGGTGCATAATGTGAGTATCCCAAAATATACTTTGAAAAGTAATATAAATAAGTTTTCGACTTGTCTGAAGAAATCAGAGTAAACTAARCAAAACAAGATCTTCAATTTTGTGAACGTTTTTTTAGTCCAGTGTCTAAAATTTTCAGACAAATTTAAACTTATAGACTACTTTCCCAGTACTATAAAGTTGTCTATTATTCACTGAAAAAATTAAATTATGATTTTAAAAAGTTTTCAGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26172</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>469400</contig_pos>
        <strand>+</strand>
        <context>TTTTCAGGTG[C/T]TCTTTCTCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTATTATTCACTGAAAAAATTAAATTATGATTTTAAAAAGTTTTCAGGTG</left_flank>
        <right_flank>TCTTTCTCTGCTTATCCTATAGCAACACATTCTACGTCACCTTGCTCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCGGACCCAAAGCTGGTGTCCTCTACAAGTACCTATTTATAGGTCTGGCGTTAATTATCATAATTATATACTGTATAATTATAAGATCCTTCAAAACTCGAAACATATACACTACTAGTCATATGAGCTTCAAGAAAACTATTATACGACTCCAACTGACCGTTTTGATATTTTTCTTATCTTGGTTCGTTAGTCAGGTGCTTGGTTTGGTTATTCTAGAAATTTCAAATTATCCGAAATGGCTTGGAATGCTTTTGGTGCATAATGTGAGTATCCCAAAATATACTTTGAAAAGTAATATAAATAAGTTTTCGACTTGTCTGAAGAAATCAGAGTAAACTAAACAAAACAAGATCTTCAATTTTGTGAACGTTTTTTTAGTCCAGTGTCTAAAATTTTCAGACAAATTTAAACTTATAGACTACTTTCCCAGTACTATAAAGTTGTCTATTATTCACTGAAAAAATTAAATTATGATTTTAAAAAGTTTTCAGGTGCTCTTTCTCTGCTTATCCTATAGCAACACATTCTACGTCACCTTGCTCAAAAGCAAAGAGTATAGAGATCAATTTTGTAGTTTGTGGTGTCTACGAAAATCCACGTCTTCTTGGTGAATGTTCTAATTGTAAGTTTTTATTGATCCAAAAGGATCCAATAACGTCGCAAAATCAGGCAAAAAAGAAAACAAAAGAAAAAACCACAAGAGGGAACGAACTAACGCTCCGTGCCCACTGGCGCCAGCACACATCCCCGACACCACACAGGTGATTCGTGATTAACCAATTACAGAGATAGAGAAAATCGACTTTGAACATCGCTATTTTTGCACTGAAGATGCGATTTTTGGTACTGAAACTGATATAACTCGGCTGAAACAGCGTGTTCTAAAAATTTTAGGGGTATCTAGATAGGCTATCCTTGACATATCCTGAAATTTTCATCACAATCTGAATTGACGAGGTGTTGTGGTTCCCTTGTAAGACTGGGATTTGATAGTT</canonical>
            <polymorphic>ATTCGGACCCAAAGCTGGTGTCCTCTACAAGTACCTATTTATAGGTCTGGCGTTAATTATCATAATTATATACTGTATAATTATAAGATCCTTCAAAACTCGAAACATATACACTACTAGTCATATGAGCTTCAAGAAAACTATTATACGACTCCAACTGACCGTTTTGATATTTTTCTTATCTTGGTTCGTTAGTCAGGTGCTTGGTTTGGTTATTCTAGAAATTTCAAATTATCCGAAATGGCTTGGAATGCTTTTGGTGCATAATGTGAGTATCCCAAAATATACTTTGAAAAGTAATATAAATAAGTTTTCGACTTGTCTGAAGAAATCAGAGTAAACTAAACAAAACAAGATCTTCAATTTTGTGAACGTTTTTTTAGTCCAGTGTCTAAAATTTTCAGACAAATTTAAACTTATAGACTACTTTCCCAGTACTATAAAGTTGTCTATTATTCACTGAAAAAATTAAATTATGATTTTAAAAAGTTTTCAGGTGYTCTTTCTCTGCTTATCCTATAGCAACACATTCTACGTCACCTTGCTCAAAAGCAAAGAGTATAGAGATCAATTTTGTAGTTTGTGGTGTCTACGAAAATCCACGTCTTCTTGGTGAATGTTCTAATTGTAAGTTTTTATTGATCCAAAAGGATCCAATAACGTCGCAAAATCAGGCAAAAAAGAAAACAAAAGAAAAAACCACAAGAGGGAACGAACTAACGCTCCGTGCCCACTGGCGCCAGCACACATCCCCGACACCACACAGGTGATTCGTGATTAACCAATTACAGAGATAGAGAAAATCGACTTTGAACATCGCTATTTTTGCACTGAAGATGCGATTTTTGGTACTGAAACTGATATAACTCGGCTGAAACAGCGTGTTCTAAAAATTTTAGGGGTATCTAGATAGGCTATCCTTGACATATCCTGAAATTTTCATCACAATCTGAATTGACGAGGTGTTGTGGTTCCCTTGTAAGACTGGGATTTGATAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 269 230</canonical_bands>
                <polymorphic_bands>731 269</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTTCCCAGTACTATAAAGTTGTC</pcr_primer_p1>
		<pcr_primer_p2>ACAATTAGAACATTCACCAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>204</pcr_amplicon_size>
		<canonical_amplicon>ACTTTCCCAGTACTATAAAGTTGTCTATTATTCACTGAAAAAATTAAATTATGATTTTAAAAAGTTTTCAGGTGCTCTTTCTCTGCTTATCCTATAGCAACACATTCTACGTCACCTTGCTCAAAAGCAAAGAGTATAGAGATCAATTTTGTAGTTTGTGGTGTCTACGAAAATCCACGTCTTCTTGGTGAATGTTCTAATTGT</canonical_amplicon>
		<polymorphic_amplicon>ACTTTCCCAGTACTATAAAGTTGTCTATTATTCACTGAAAAAATTAAATTATGATTTTAAAAAGTTTTCAGGTGYTCTTTCTCTGCTTATCCTATAGCAACACATTCTACGTCACCTTGCTCAAAAGCAAAGAGTATAGAGATCAATTTTGTAGTTTGTGGTGTCTACGAAAATCCACGTCTTCTTGGTGAATGTTCTAATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26173</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>469867</contig_pos>
        <strand></strand>
        <context>GACGAGGTGT[T/C]GTGGTTCCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATCCTTGACATATCCTGAAATTTTCATCACAATCTGAATTGACGAGGTGT</left_flank>
        <right_flank>GTGGTTCCCTTGTAAGACTGGGATTTGATAGTTAACTTAAAAATTTTCAC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAAATTATGATTTTAAAAAGTTTTCAGGTGCTCTTTCTCTGCTTATCCTATAGCAACACATTCTACGTCACCTTGCTCAAAAGCAAAGAGTATAGAGATCAATTTTGTAGTTTGTGGTGTCTACGAAAATCCACGTCTTCTTGGTGAATGTTCTAATTGTAAGTTTTTATTGATCCAAAAGGATCCAATAACGTCGCAAAATCAGGCAAAAAAGAAAACAAAAGAAAAAACCACAAGAGGGAACGAACTAACGCTCCGTGCCCACTGGCGCCAGCACACATCCCCGACACCACACAGGTGATTCGTGATTAACCAATTACAGAGATAGAGAAAATCGACTTTGAACATCGCTATTTTTGCACTGAAGATGCGATTTTTGGTACTGAAACTGATATAACTCGGCTGAAACAGCGTGTTCTAAAAATTTTAGGGGTATCTAGATAGGCTATCCTTGACATATCCTGAAATTTTCATCACAATCTGAATTGACGAGGTGTTGTGGTTCCCTTGTAAGACTGGGATTTGATAGTTAACTTAAAAATTTTCACATTTGGAGAAAGTCATGAACAATCAAAAACATTTTTATTTTATTTGAAAATCAAAAGGTCAAAAATTGAAAGATAAAAAATTAGAAGATCAAAAAAAGGTTTTTTTTTCCAAAAATTCGGAACTCCAGAGATTACCAAGTCTCATTTCTCTTCTGTAGCTTTATTTCCGGGCTAATGTATTTTTGTGACATCGATTGAGAATTCACAATTGCAATTCCAGAAGACGTGGATTTTCGTAGACACCACAAACTACAAAATTGATCTCTATACTCTTTGCTTTTGAGCAAGGTGACGTAGAATGTGTTGCTATAGGATAAGCAGAGAAAGAACACCTGAAAACTTTTTAAAATCATAATTTAATTTTTTCAGTGAATAATAGACAACTTTATAGTACTGGGAAAGTAGTCTATAAGTTTAAATTTGTCTGAAAATTTTAGACACTGGACTAAA</canonical>
            <polymorphic>ATTAAATTATGATTTTAAAAAGTTTTCAGGTGCTCTTTCTCTGCTTATCCTATAGCAACACATTCTACGTCACCTTGCTCAAAAGCAAAGAGTATAGAGATCAATTTTGTAGTTTGTGGTGTCTACGAAAATCCACGTCTTCTTGGTGAATGTTCTAATTGTAAGTTTTTATTGATCCAAAAGGATCCAATAACGTCGCAAAATCAGGCAAAAAAGAAAACAAAAGAAAAAACCACAAGAGGGAACGAACTAACGCTCCGTGCCCACTGGCGCCAGCACACATCCCCGACACCACACAGGTGATTCGTGATTAACCAATTACAGAGATAGAGAAAATCGACTTTGAACATCGCTATTTTTGCACTGAAGATGCGATTTTTGGTACTGAAACTGATATAACTCGGCTGAAACAGCGTGTTCTAAAAATTTTAGGGGTATCTAGATAGGCTATCCTTGACATATCCTGAAATTTTCATCACAATCTGAATTGACGAGGTGTYGTGGTTCCCTTGTAAGACTGGGATTTGATAGTTAACTTAAAAATTTTCACATTTGGAGAAAGTCATGAACAATCAAAAACATTTTTATTTTATTTGAAAATCAAAAGGTCAAAAATTGAAAGATAAAAAATTAGAAGATCAAAAAAAGGTTTTTTTTTCCAAAAATTCGGAACTCCAGAGATTACCAAGTCTCATTTCTCTTCTGTAGCTTTATTTCCGGGCTAATGTATTTTTGTGACATCGATTGAGAATTCACAATTGCAATTCCAGAAGACGTGGATTTTCGTAGACACCACAAACTACAAAATTGATCTCTATACTCTTTGCTTTTGAGCAAGGTGACGTAGAATGTGTTGCTATAGGATAAGCAGAGAAAGAACACCTGAAAACTTTTTAAAATCATAATTTAATTTTTTCAGTGAATAATAGACAACTTTATAGTACTGGGAAAGTAGTCTATAAGTTTAAATTTGTCTGAAAATTTTAGACACTGGACTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTATCCTTGACATATCCTGAA</pcr_primer_p1>
		<pcr_primer_p2>GAAATGAGACTTGGTAATCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCTATCCTTGACATATCCTGAAATTTTCATCACAATCTGAATTGACGAGGTGTTGTGGTTCCCTTGTAAGACTGGGATTTGATAGTTAACTTAAAAATTTTCACATTTGGAGAAAGTCATGAACAATCAAAAACATTTTTATTTTATTTGAAAATCAAAAGGTCAAAAATTGAAAGATAAAAAATTAGAAGATCAAAAAAAGGTTTTTTTTTCCAAAAATTCGGAACTCCAGAGATTACCAAGTCTCATTTC</canonical_amplicon>
		<polymorphic_amplicon>GCTATCCTTGACATATCCTGAAATTTTCATCACAATCTGAATTGACGAGGTGTYGTGGTTCCCTTGTAAGACTGGGATTTGATAGTTAACTTAAAAATTTTCACATTTGGAGAAAGTCATGAACAATCAAAAACATTTTTATTTTATTTGAAAATCAAAAGGTCAAAAATTGAAAGATAAAAAATTAGAAGATCAAAAAAAGGTTTTTTTTTCCAAAAATTCGGAACTCCAGAGATTACCAAGTCTCATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26174</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>471131</contig_pos>
        <strand>+</strand>
        <context>TTCGTCTTTT[C/T]CTCCCCTGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTT</left_flank>
        <right_flank>CTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACGAAACGAAAGCTC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACATGAAAATATACTAGAATACTGTATAAGCATGTATTTCTCGTTTTTATTTTCAGAAAAAGAGGAAAATTGGCCGAAAACCAGAAGTTGGAAATTAGAAGTGGGAACTTCTAAAAAATCTAGAGATGAAAGTGTTACTTAACTGTATAAATGTAAGAATCGACCAGAAATTCCAGATTTTCAATCTAATTATTACAGGGAGCCGGAAAGTCCTAATTTTCCCGGCTATCGGATACTCCAGAAATGCAAAACCTAAGAAAGAGGAAAGAAGGAAAGCTTGAACTAGCAGTGAGTAGATTTGATTAAAAATTCTTTTTAAAAACTTTAAATTCAGGTGGCGATGATAAAGAATTCGGAAATGAGGAATTTGTGGATTTCGAAAAAAAATTCCATATCTTCTATCTGAGGTACAGTACAGAAACTAGTGAAGGCTATAAAATCTATATGAATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTTTCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACGAAACGAAAGCTCCGGCGCCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATACAATTTTTGATTACATTTTTTGTGTTTTTCATTGTTTTTTCCGTTTAATAAATCATTTTCAAGCAGCCGCTAGCTTCCAAATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATT</canonical>
            <polymorphic>ACACATGAAAATATACTAGAATACTGTATAAGCATGTATTTCTCGTTTTTATTTTCAGAAAAAGAGGAAAATTGGCCGAAAACCAGAAGTTGGAAATTAGAAGTGGGAACTTCTAAAAAATCTAGAGATGAAAGTGTTACTTAACTGTATAAATGTAAGAATCGACCAGAAATTCCAGATTTTCAATCTAATTATTACAGGGAGCCGGAAAGTCCTAATTTTCCCGGCTATCGGATACTCCAGAAATGCAAAACCTAAGAAAGAGGAAAGAAGGAAAGCTTGAACTAGCAGTGAGTAGATTTGATTAAAAATTCTTTTTAAAAACTTTAAATTCAGGTGGCGATGATAAAGAATTCGGAAATGAGGAATTTGTGGATTTCGAAAAAAAATTCCATATCTTCTATCTGAGGTACAGTACAGAAACTAGTGAAGGCTATAAAATCTATATGAATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTTYCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACGAAACGAAAGCTCCGGCGCCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATACAATTTTTGATTACATTTTTTGTGTTTTTCATTGTTTTTTCCGTTTAATAAATCATTTTCAAGCAGCCGCTAGCTTCCAAATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATAAAGAATTCGGAAATGA</pcr_primer_p1>
		<pcr_primer_p2>GTATTTTTCCCTTCCAATGTAGT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ATGATAAAGAATTCGGAAATGAGGAATTTGTGGATTTCGAAAAAAAATTCCATATCTTCTATCTGAGGTACAGTACAGAAACTAGTGAAGGCTATAAAATCTATATGAATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTTTCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACGAAACGAAAGCTCCGGCGCCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATAC</canonical_amplicon>
		<polymorphic_amplicon>ATGATAAAGAATTCGGAAATGAGGAATTTGTGGATTTCGAAAAAAAATTCCATATCTTCTATCTGAGGTACAGTACAGAAACTAGTGAAGGCTATAAAATCTATATGAATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTTYCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACGAAACGAAAGCTCCGGCGCCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26175</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>471169</contig_pos>
        <strand>+</strand>
        <context>GAAAACGGAC[A/G]AAACGAAAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTCGTCTTTTTCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGAC</left_flank>
        <right_flank>AAACGAAAGCTCCGGCGCCGCTCCAGCCAACACGACTACATTGGAAGGGA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTCGTTTTTATTTTCAGAAAAAGAGGAAAATTGGCCGAAAACCAGAAGTTGGAAATTAGAAGTGGGAACTTCTAAAAAATCTAGAGATGAAAGTGTTACTTAACTGTATAAATGTAAGAATCGACCAGAAATTCCAGATTTTCAATCTAATTATTACAGGGAGCCGGAAAGTCCTAATTTTCCCGGCTATCGGATACTCCAGAAATGCAAAACCTAAGAAAGAGGAAAGAAGGAAAGCTTGAACTAGCAGTGAGTAGATTTGATTAAAAATTCTTTTTAAAAACTTTAAATTCAGGTGGCGATGATAAAGAATTCGGAAATGAGGAATTTGTGGATTTCGAAAAAAAATTCCATATCTTCTATCTGAGGTACAGTACAGAAACTAGTGAAGGCTATAAAATCTATATGAATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTTTCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACGAAACGAAAGCTCCGGCGCCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATACAATTTTTGATTACATTTTTTGTGTTTTTCATTGTTTTTTCCGTTTAATAAATCATTTTCAAGCAGCCGCTAGCTTCCAAATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGT</canonical>
            <polymorphic>TTTCTCGTTTTTATTTTCAGAAAAAGAGGAAAATTGGCCGAAAACCAGAAGTTGGAAATTAGAAGTGGGAACTTCTAAAAAATCTAGAGATGAAAGTGTTACTTAACTGTATAAATGTAAGAATCGACCAGAAATTCCAGATTTTCAATCTAATTATTACAGGGAGCCGGAAAGTCCTAATTTTCCCGGCTATCGGATACTCCAGAAATGCAAAACCTAAGAAAGAGGAAAGAAGGAAAGCTTGAACTAGCAGTGAGTAGATTTGATTAAAAATTCTTTTTAAAAACTTTAAATTCAGGTGGCGATGATAAAGAATTCGGAAATGAGGAATTTGTGGATTTCGAAAAAAAATTCCATATCTTCTATCTGAGGTACAGTACAGAAACTAGTGAAGGCTATAAAATCTATATGAATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTTTCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACRAAACGAAAGCTCCGGCGCCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATACAATTTTTGATTACATTTTTTGTGTTTTTCATTGTTTTTTCCGTTTAATAAATCATTTTCAAGCAGCCGCTAGCTTCCAAATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATAAAGAATTCGGAAATGA</pcr_primer_p1>
		<pcr_primer_p2>GTATTTTTCCCTTCCAATGTAGT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ATGATAAAGAATTCGGAAATGAGGAATTTGTGGATTTCGAAAAAAAATTCCATATCTTCTATCTGAGGTACAGTACAGAAACTAGTGAAGGCTATAAAATCTATATGAATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTTTCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACGAAACGAAAGCTCCGGCGCCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATAC</canonical_amplicon>
		<polymorphic_amplicon>ATGATAAAGAATTCGGAAATGAGGAATTTGTGGATTTCGAAAAAAAATTCCATATCTTCTATCTGAGGTACAGTACAGAAACTAGTGAAGGCTATAAAATCTATATGAATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTTTCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACRAAACGAAAGCTCCGGCGCCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26176</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>471186</contig_pos>
        <strand>+</strand>
        <context>AAGCTCCGGC[C/T]CCGCTCCAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTGGATCGTCATCGAAAAAGGCGAAAACGGACGAAACGAAAGCTCCGGC</left_flank>
        <right_flank>CCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATACAATTTTTGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAAAAAGAGGAAAATTGGCCGAAAACCAGAAGTTGGAAATTAGAAGTGGGAACTTCTAAAAAATCTAGAGATGAAAGTGTTACTTAACTGTATAAATGTAAGAATCGACCAGAAATTCCAGATTTTCAATCTAATTATTACAGGGAGCCGGAAAGTCCTAATTTTCCCGGCTATCGGATACTCCAGAAATGCAAAACCTAAGAAAGAGGAAAGAAGGAAAGCTTGAACTAGCAGTGAGTAGATTTGATTAAAAATTCTTTTTAAAAACTTTAAATTCAGGTGGCGATGATAAAGAATTCGGAAATGAGGAATTTGTGGATTTCGAAAAAAAATTCCATATCTTCTATCTGAGGTACAGTACAGAAACTAGTGAAGGCTATAAAATCTATATGAATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTTTCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACGAAACGAAAGCTCCGGCGCCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATACAATTTTTGATTACATTTTTTGTGTTTTTCATTGTTTTTTCCGTTTAATAAATCATTTTCAAGCAGCCGCTAGCTTCCAAATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGTTGTGGTTCCCTTGTTAC</canonical>
            <polymorphic>CAGAAAAAGAGGAAAATTGGCCGAAAACCAGAAGTTGGAAATTAGAAGTGGGAACTTCTAAAAAATCTAGAGATGAAAGTGTTACTTAACTGTATAAATGTAAGAATCGACCAGAAATTCCAGATTTTCAATCTAATTATTACAGGGAGCCGGAAAGTCCTAATTTTCCCGGCTATCGGATACTCCAGAAATGCAAAACCTAAGAAAGAGGAAAGAAGGAAAGCTTGAACTAGCAGTGAGTAGATTTGATTAAAAATTCTTTTTAAAAACTTTAAATTCAGGTGGCGATGATAAAGAATTCGGAAATGAGGAATTTGTGGATTTCGAAAAAAAATTCCATATCTTCTATCTGAGGTACAGTACAGAAACTAGTGAAGGCTATAAAATCTATATGAATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTTTCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACGAAACGAAAGCTCCGGCYCCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATACAATTTTTGATTACATTTTTTGTGTTTTTCATTGTTTTTTCCGTTTAATAAATCATTTTCAAGCAGCCGCTAGCTTCCAAATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGTTGTGGTTCCCTTGTTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 214 188 98</canonical_bands>
                <polymorphic_bands>714 188 98</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCGCC</site>
                <isoschizomers>
                    <enzyme>BbeI</enzyme>
                    <enzyme>EgeI</enzyme>
                    <enzyme>EheI</enzyme>
                    <enzyme>KasI</enzyme>
                    <enzyme>Mly113I</enzyme>
                    <enzyme>NarI</enzyme>
                    <enzyme>SfoI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>501 285 214</canonical_bands>
                <polymorphic_bands>715 285</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>506 348 146</canonical_bands>
                <polymorphic_bands>652 348</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>503 167 102 90 65 50 23</canonical_bands>
                <polymorphic_bands>605 167 90 65 50 23</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>503 255 105 90 47</canonical_bands>
                <polymorphic_bands>608 255 90 47</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGGTACAGTACAGAAACTAGTGA</pcr_primer_p1>
		<pcr_primer_p2>GAAAATGATTTATTAAACGGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAGGTACAGTACAGAAACTAGTGAAGGCTATAAAATCTATATGAATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTTTCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACGAAACGAAAGCTCCGGCGCCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATACAATTTTTGATTACATTTTTTGTGTTTTTCATTGTTTTTTCCGTTTAATAAATCATTTTC</canonical_amplicon>
		<polymorphic_amplicon>TGAGGTACAGTACAGAAACTAGTGAAGGCTATAAAATCTATATGAATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTTTCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACGAAACGAAAGCTCCGGCYCCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATACAATTTTTGATTACATTTTTTGTGTTTTTCATTGTTTTTTCCGTTTAATAAATCATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26177</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>471237</contig_pos>
        <strand></strand>
        <context>AATTTTTGAT[T/C]ACATTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATACAATTTTTGAT</left_flank>
        <right_flank>ACATTTTTTGTGTTTTTCATTGTTTTTTCCGTTTAATAAATCATTTTCAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACTTCTAAAAAATCTAGAGATGAAAGTGTTACTTAACTGTATAAATGTAAGAATCGACCAGAAATTCCAGATTTTCAATCTAATTATTACAGGGAGCCGGAAAGTCCTAATTTTCCCGGCTATCGGATACTCCAGAAATGCAAAACCTAAGAAAGAGGAAAGAAGGAAAGCTTGAACTAGCAGTGAGTAGATTTGATTAAAAATTCTTTTTAAAAACTTTAAATTCAGGTGGCGATGATAAAGAATTCGGAAATGAGGAATTTGTGGATTTCGAAAAAAAATTCCATATCTTCTATCTGAGGTACAGTACAGAAACTAGTGAAGGCTATAAAATCTATATGAATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTTTCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACGAAACGAAAGCTCCGGCGCCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATACAATTTTTGATTACATTTTTTGTGTTTTTCATTGTTTTTTCCGTTTAATAAATCATTTTCAAGCAGCCGCTAGCTTCCAAATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGTTGTGGTTCCCTTGTTACTGTTGCGCGTCAGTTATGATGTTTCGCACGCAAAGTAATATTTTGACCTCA</canonical>
            <polymorphic>GAACTTCTAAAAAATCTAGAGATGAAAGTGTTACTTAACTGTATAAATGTAAGAATCGACCAGAAATTCCAGATTTTCAATCTAATTATTACAGGGAGCCGGAAAGTCCTAATTTTCCCGGCTATCGGATACTCCAGAAATGCAAAACCTAAGAAAGAGGAAAGAAGGAAAGCTTGAACTAGCAGTGAGTAGATTTGATTAAAAATTCTTTTTAAAAACTTTAAATTCAGGTGGCGATGATAAAGAATTCGGAAATGAGGAATTTGTGGATTTCGAAAAAAAATTCCATATCTTCTATCTGAGGTACAGTACAGAAACTAGTGAAGGCTATAAAATCTATATGAATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTTTCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACGAAACGAAAGCTCCGGCGCCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATACAATTTTTGATYACATTTTTTGTGTTTTTCATTGTTTTTTCCGTTTAATAAATCATTTTCAAGCAGCCGCTAGCTTCCAAATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGTTGTGGTTCCCTTGTTACTGTTGCGCGTCAGTTATGATGTTTCGCACGCAAAGTAATATTTTGACCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCTATATGAATTGTTTCAGTTCC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCGAATTTGGAAGCTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATCTATATGAATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTTTCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACGAAACGAAAGCTCCGGCGCCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATACAATTTTTGATTACATTTTTTGTGTTTTTCATTGTTTTTTCCGTTTAATAAATCATTTTCAAGCAGCCGCTAGCTTCCAAATTCGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AATCTATATGAATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTTTCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACGAAACGAAAGCTCCGGCGCCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATACAATTTTTGATYACATTTTTTGTGTTTTTCATTGTTTTTTCCGTTTAATAAATCATTTTCAAGCAGCCGCTAGCTTCCAAATTCGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26178</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>471317</contig_pos>
        <strand>+</strand>
        <context>TTCGAAAAAA[G/T]ATATGGYAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGTTTAATAAATCATTTTCAAGCAGCCGCTAGCTTCCAAATTCGAAAAAA</left_flank>
        <right_flank>ATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAATTATTACAGGGAGCCGGAAAGTCCTAATTTTCCCGGCTATCGGATACTCCAGAAATGCAAAACCTAAGAAAGAGGAAAGAAGGAAAGCTTGAACTAGCAGTGAGTAGATTTGATTAAAAATTCTTTTTAAAAACTTTAAATTCAGGTGGCGATGATAAAGAATTCGGAAATGAGGAATTTGTGGATTTCGAAAAAAAATTCCATATCTTCTATCTGAGGTACAGTACAGAAACTAGTGAAGGCTATAAAATCTATATGAATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTTTCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACGAAACGAAAGCTCCGGCGCCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATACAATTTTTGATTACATTTTTTGTGTTTTTCATTGTTTTTTCCGTTTAATAAATCATTTTCAAGCAGCCGCTAGCTTCCAAATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGTTGTGGTTCCCTTGTTACTGTTGCGCGTCAGTTATGATGTTTCGCACGCAAAGTAATATTTTGACCTCAAAAAACGGCACGATGTTTGGATTTATGATTTCTAGAAGGAGATGTCAAGTTTTTTTTTTTGTCATTTTTCGGGCAAATAA</canonical>
            <polymorphic>TCTAATTATTACAGGGAGCCGGAAAGTCCTAATTTTCCCGGCTATCGGATACTCCAGAAATGCAAAACCTAAGAAAGAGGAAAGAAGGAAAGCTTGAACTAGCAGTGAGTAGATTTGATTAAAAATTCTTTTTAAAAACTTTAAATTCAGGTGGCGATGATAAAGAATTCGGAAATGAGGAATTTGTGGATTTCGAAAAAAAATTCCATATCTTCTATCTGAGGTACAGTACAGAAACTAGTGAAGGCTATAAAATCTATATGAATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTTTCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACGAAACGAAAGCTCCGGCGCCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATACAATTTTTGATTACATTTTTTGTGTTTTTCATTGTTTTTTCCGTTTAATAAATCATTTTCAAGCAGCCGCTAGCTTCCAAATTCGAAAAAAKATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGTTGTGGTTCCCTTGTTACTGTTGCGCGTCAGTTATGATGTTTCGCACGCAAAGTAATATTTTGACCTCAAAAAACGGCACGATGTTTGGATTTATGATTTCTAGAAGGAGATGTCAAGTTTTTTTTTTTGTCATTTTTCGGGCAAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCGTTTAATAAATCATTTTC</pcr_primer_p1>
		<pcr_primer_p2>ACACCTCCGAGTTATTTCAGT</pcr_primer_p2>
		<pcr_amplicon_size>407</pcr_amplicon_size>
		<canonical_amplicon>TTTCCGTTTAATAAATCATTTTCAAGCAGCCGCTAGCTTCCAAATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGT</canonical_amplicon>
		<polymorphic_amplicon>TTTCCGTTTAATAAATCATTTTCAAGCAGCCGCTAGCTTCCAAATTCGAAAAAAKATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26179</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>471324</contig_pos>
        <strand>+</strand>
        <context>AAAKATATGG[C/T]AATTATTGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAATCATTTTCAAGCAGCCGCTAGCTTCCAAATTCGAAAAAATATATGG</left_flank>
        <right_flank>AATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGATAGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTACAGGGAGCCGGAAAGTCCTAATTTTCCCGGCTATCGGATACTCCAGAAATGCAAAACCTAAGAAAGAGGAAAGAAGGAAAGCTTGAACTAGCAGTGAGTAGATTTGATTAAAAATTCTTTTTAAAAACTTTAAATTCAGGTGGCGATGATAAAGAATTCGGAAATGAGGAATTTGTGGATTTCGAAAAAAAATTCCATATCTTCTATCTGAGGTACAGTACAGAAACTAGTGAAGGCTATAAAATCTATATGAATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTTTCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACGAAACGAAAGCTCCGGCGCCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATACAATTTTTGATTACATTTTTTGTGTTTTTCATTGTTTTTTCCGTTTAATAAATCATTTTCAAGCAGCCGCTAGCTTCCAAATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGTTGTGGTTCCCTTGTTACTGTTGCGCGTCAGTTATGATGTTTCGCACGCAAAGTAATATTTTGACCTCAAAAAACGGCACGATGTTTGGATTTATGATTTCTAGAAGGAGATGTCAAGTTTTTTTTTTTGTCATTTTTCGGGCAAATAATTCGGAG</canonical>
            <polymorphic>ATTACAGGGAGCCGGAAAGTCCTAATTTTCCCGGCTATCGGATACTCCAGAAATGCAAAACCTAAGAAAGAGGAAAGAAGGAAAGCTTGAACTAGCAGTGAGTAGATTTGATTAAAAATTCTTTTTAAAAACTTTAAATTCAGGTGGCGATGATAAAGAATTCGGAAATGAGGAATTTGTGGATTTCGAAAAAAAATTCCATATCTTCTATCTGAGGTACAGTACAGAAACTAGTGAAGGCTATAAAATCTATATGAATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTTTCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACGAAACGAAAGCTCCGGCGCCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATACAATTTTTGATTACATTTTTTGTGTTTTTCATTGTTTTTTCCGTTTAATAAATCATTTTCAAGCAGCCGCTAGCTTCCAAATTCGAAAAAATATATGGYAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGTTGTGGTTCCCTTGTTACTGTTGCGCGTCAGTTATGATGTTTCGCACGCAAAGTAATATTTTGACCTCAAAAAACGGCACGATGTTTGGATTTATGATTTCTAGAAGGAGATGTCAAGTTTTTTTTTTTGTCATTTTTCGGGCAAATAATTCGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCGTTTAATAAATCATTTTC</pcr_primer_p1>
		<pcr_primer_p2>ACACCTCCGAGTTATTTCAGT</pcr_primer_p2>
		<pcr_amplicon_size>407</pcr_amplicon_size>
		<canonical_amplicon>TTTCCGTTTAATAAATCATTTTCAAGCAGCCGCTAGCTTCCAAATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGT</canonical_amplicon>
		<polymorphic_amplicon>TTTCCGTTTAATAAATCATTTTCAAGCAGCCGCTAGCTTCCAAATTCGAAAAAATATATGGYAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26180</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>471356</contig_pos>
        <strand>+</strand>
        <context>CCAATTGTAG[A/G]AGATTCGCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAG</left_flank>
        <right_flank>AGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCG</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTATCGGATACTCCAGAAATGCAAAACCTAAGAAAGAGGAAAGAAGGAAAGCTTGAACTAGCAGTGAGTAGATTTGATTAAAAATTCTTTTTAAAAACTTTAAATTCAGGTGGCGATGATAAAGAATTCGGAAATGAGGAATTTGTGGATTTCGAAAAAAAATTCCATATCTTCTATCTGAGGTACAGTACAGAAACTAGTGAAGGCTATAAAATCTATATGAATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTTTCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACGAAACGAAAGCTCCGGCGCCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATACAATTTTTGATTACATTTTTTGTGTTTTTCATTGTTTTTTCCGTTTAATAAATCATTTTCAAGCAGCCGCTAGCTTCCAAATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGTTGTGGTTCCCTTGTTACTGTTGCGCGTCAGTTATGATGTTTCGCACGCAAAGTAATATTTTGACCTCAAAAAACGGCACGATGTTTGGATTTATGATTTCTAGAAGGAGATGTCAAGTTTTTTTTTTTGTCATTTTTCGGGCAAATAATTCGGAGGGTACAAAAATTTAGGGGTTATTGGGGTACAA</canonical>
            <polymorphic>GGCTATCGGATACTCCAGAAATGCAAAACCTAAGAAAGAGGAAAGAAGGAAAGCTTGAACTAGCAGTGAGTAGATTTGATTAAAAATTCTTTTTAAAAACTTTAAATTCAGGTGGCGATGATAAAGAATTCGGAAATGAGGAATTTGTGGATTTCGAAAAAAAATTCCATATCTTCTATCTGAGGTACAGTACAGAAACTAGTGAAGGCTATAAAATCTATATGAATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTTTCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACGAAACGAAAGCTCCGGCGCCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATACAATTTTTGATTACATTTTTTGTGTTTTTCATTGTTTTTTCCGTTTAATAAATCATTTTCAAGCAGCCGCTAGCTTCCAAATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGRAGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGTTGTGGTTCCCTTGTTACTGTTGCGCGTCAGTTATGATGTTTCGCACGCAAAGTAATATTTTGACCTCAAAAAACGGCACGATGTTTGGATTTATGATTTCTAGAAGGAGATGTCAAGTTTTTTTTTTTGTCATTTTTCGGGCAAATAATTCGGAGGGTACAAAAATTTAGGGGTTATTGGGGTACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGCTTCCAAATTCGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACACCTCCGAGTTATTTCAGT</pcr_primer_p2>
		<pcr_amplicon_size>374</pcr_amplicon_size>
		<canonical_amplicon>TAGCTTCCAAATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGT</canonical_amplicon>
		<polymorphic_amplicon>TAGCTTCCAAATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGRAGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26181</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>471367</contig_pos>
        <strand>+</strand>
        <context>AGATTCGCTC[G/T]CGRTAGGCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTC</left_flank>
        <right_flank>CGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTG</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCCAGAAATGCAAAACCTAAGAAAGAGGAAAGAAGGAAAGCTTGAACTAGCAGTGAGTAGATTTGATTAAAAATTCTTTTTAAAAACTTTAAATTCAGGTGGCGATGATAAAGAATTCGGAAATGAGGAATTTGTGGATTTCGAAAAAAAATTCCATATCTTCTATCTGAGGTACAGTACAGAAACTAGTGAAGGCTATAAAATCTATATGAATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTTTCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACGAAACGAAAGCTCCGGCGCCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATACAATTTTTGATTACATTTTTTGTGTTTTTCATTGTTTTTTCCGTTTAATAAATCATTTTCAAGCAGCCGCTAGCTTCCAAATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGTTGTGGTTCCCTTGTTACTGTTGCGCGTCAGTTATGATGTTTCGCACGCAAAGTAATATTTTGACCTCAAAAAACGGCACGATGTTTGGATTTATGATTTCTAGAAGGAGATGTCAAGTTTTTTTTTTTGTCATTTTTCGGGCAAATAATTCGGAGGGTACAAAAATTTAGGGGTTATTGGGGTACAAAGCAATTTAGG</canonical>
            <polymorphic>ACTCCAGAAATGCAAAACCTAAGAAAGAGGAAAGAAGGAAAGCTTGAACTAGCAGTGAGTAGATTTGATTAAAAATTCTTTTTAAAAACTTTAAATTCAGGTGGCGATGATAAAGAATTCGGAAATGAGGAATTTGTGGATTTCGAAAAAAAATTCCATATCTTCTATCTGAGGTACAGTACAGAAACTAGTGAAGGCTATAAAATCTATATGAATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTTTCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACGAAACGAAAGCTCCGGCGCCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATACAATTTTTGATTACATTTTTTGTGTTTTTCATTGTTTTTTCCGTTTAATAAATCATTTTCAAGCAGCCGCTAGCTTCCAAATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCKCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGTTGTGGTTCCCTTGTTACTGTTGCGCGTCAGTTATGATGTTTCGCACGCAAAGTAATATTTTGACCTCAAAAAACGGCACGATGTTTGGATTTATGATTTCTAGAAGGAGATGTCAAGTTTTTTTTTTTGTCATTTTTCGGGCAAATAATTCGGAGGGTACAAAAATTTAGGGGTTATTGGGGTACAAAGCAATTTAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 160 144 138 59</canonical_bands>
                <polymorphic_bands>558 160 144 138</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGCTTCCAAATTCGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACACCTCCGAGTTATTTCAGT</pcr_primer_p2>
		<pcr_amplicon_size>374</pcr_amplicon_size>
		<canonical_amplicon>TAGCTTCCAAATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGT</canonical_amplicon>
		<polymorphic_amplicon>TAGCTTCCAAATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCKCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26182</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>471370</contig_pos>
        <strand>+</strand>
        <context>TTCGCTCKCG[A/G]TAGGCCGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCG</left_flank>
        <right_flank>TAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGAAATGCAAAACCTAAGAAAGAGGAAAGAAGGAAAGCTTGAACTAGCAGTGAGTAGATTTGATTAAAAATTCTTTTTAAAAACTTTAAATTCAGGTGGCGATGATAAAGAATTCGGAAATGAGGAATTTGTGGATTTCGAAAAAAAATTCCATATCTTCTATCTGAGGTACAGTACAGAAACTAGTGAAGGCTATAAAATCTATATGAATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTTTCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACGAAACGAAAGCTCCGGCGCCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATACAATTTTTGATTACATTTTTTGTGTTTTTCATTGTTTTTTCCGTTTAATAAATCATTTTCAAGCAGCCGCTAGCTTCCAAATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGTTGTGGTTCCCTTGTTACTGTTGCGCGTCAGTTATGATGTTTCGCACGCAAAGTAATATTTTGACCTCAAAAAACGGCACGATGTTTGGATTTATGATTTCTAGAAGGAGATGTCAAGTTTTTTTTTTTGTCATTTTTCGGGCAAATAATTCGGAGGGTACAAAAATTTAGGGGTTATTGGGGTACAAAGCAATTTAGGGGT</canonical>
            <polymorphic>CCAGAAATGCAAAACCTAAGAAAGAGGAAAGAAGGAAAGCTTGAACTAGCAGTGAGTAGATTTGATTAAAAATTCTTTTTAAAAACTTTAAATTCAGGTGGCGATGATAAAGAATTCGGAAATGAGGAATTTGTGGATTTCGAAAAAAAATTCCATATCTTCTATCTGAGGTACAGTACAGAAACTAGTGAAGGCTATAAAATCTATATGAATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTTTCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACGAAACGAAAGCTCCGGCGCCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATACAATTTTTGATTACATTTTTTGTGTTTTTCATTGTTTTTTCCGTTTAATAAATCATTTTCAAGCAGCCGCTAGCTTCCAAATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGRTAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGTTGTGGTTCCCTTGTTACTGTTGCGCGTCAGTTATGATGTTTCGCACGCAAAGTAATATTTTGACCTCAAAAAACGGCACGATGTTTGGATTTATGATTTCTAGAAGGAGATGTCAAGTTTTTTTTTTTGTCATTTTTCGGGCAAATAATTCGGAGGGTACAAAAATTTAGGGGTTATTGGGGTACAAAGCAATTTAGGGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 160 141 138 59</canonical_bands>
                <polymorphic_bands>561 160 141 138</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>496 202 162 101 39</canonical_bands>
                <polymorphic_bands>535 202 162 101</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGCTTCCAAATTCGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACACCTCCGAGTTATTTCAGT</pcr_primer_p2>
		<pcr_amplicon_size>374</pcr_amplicon_size>
		<canonical_amplicon>TAGCTTCCAAATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGT</canonical_amplicon>
		<polymorphic_amplicon>TAGCTTCCAAATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGRTAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26183</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>471409</contig_pos>
        <strand>+</strand>
        <context>CGCTTTCGCG[A/G]TTGGTCTGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCG</left_flank>
        <right_flank>TTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTGAACTAGCAGTGAGTAGATTTGATTAAAAATTCTTTTTAAAAACTTTAAATTCAGGTGGCGATGATAAAGAATTCGGAAATGAGGAATTTGTGGATTTCGAAAAAAAATTCCATATCTTCTATCTGAGGTACAGTACAGAAACTAGTGAAGGCTATAAAATCTATATGAATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTTTCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACGAAACGAAAGCTCCGGCGCCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATACAATTTTTGATTACATTTTTTGTGTTTTTCATTGTTTTTTCCGTTTAATAAATCATTTTCAAGCAGCCGCTAGCTTCCAAATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGTTGTGGTTCCCTTGTTACTGTTGCGCGTCAGTTATGATGTTTCGCACGCAAAGTAATATTTTGACCTCAAAAAACGGCACGATGTTTGGATTTATGATTTCTAGAAGGAGATGTCAAGTTTTTTTTTTTGTCATTTTTCGGGCAAATAATTCGGAGGGTACAAAAATTTAGGGGTTATTGGGGTACAAAGCAATTTAGGGGTGCAAAATCTCCAATTCAGGGGTACGAAATACTTGAAATA</canonical>
            <polymorphic>CTTGAACTAGCAGTGAGTAGATTTGATTAAAAATTCTTTTTAAAAACTTTAAATTCAGGTGGCGATGATAAAGAATTCGGAAATGAGGAATTTGTGGATTTCGAAAAAAAATTCCATATCTTCTATCTGAGGTACAGTACAGAAACTAGTGAAGGCTATAAAATCTATATGAATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTTTCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACGAAACGAAAGCTCCGGCGCCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATACAATTTTTGATTACATTTTTTGTGTTTTTCATTGTTTTTTCCGTTTAATAAATCATTTTCAAGCAGCCGCTAGCTTCCAAATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGRTTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGTTGTGGTTCCCTTGTTACTGTTGCGCGTCAGTTATGATGTTTCGCACGCAAAGTAATATTTTGACCTCAAAAAACGGCACGATGTTTGGATTTATGATTTCTAGAAGGAGATGTCAAGTTTTTTTTTTTGTCATTTTTCGGGCAAATAATTCGGAGGGTACAAAAATTTAGGGGTTATTGGGGTACAAAGCAATTTAGGGGTGCAAAATCTCCAATTCAGGGGTACGAAATACTTGAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGCGA</site>
                <isoschizomers>
                    <enzyme>Bsp68I</enzyme>
                    <enzyme>NruI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>457 202 162 140 39</canonical_bands>
                <polymorphic_bands>457 202 201 140</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGCTTCCAAATTCGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACACCTCCGAGTTATTTCAGT</pcr_primer_p2>
		<pcr_amplicon_size>374</pcr_amplicon_size>
		<canonical_amplicon>TAGCTTCCAAATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGT</canonical_amplicon>
		<polymorphic_amplicon>TAGCTTCCAAATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGRTTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26184</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>471484</contig_pos>
        <strand>+</strand>
        <context>TATTTCACCT[A/G]TTATAGACGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCT</left_flank>
        <right_flank>TTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGGAAATGAGGAATTTGTGGATTTCGAAAAAAAATTCCATATCTTCTATCTGAGGTACAGTACAGAAACTAGTGAAGGCTATAAAATCTATATGAATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTTTCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACGAAACGAAAGCTCCGGCGCCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATACAATTTTTGATTACATTTTTTGTGTTTTTCATTGTTTTTTCCGTTTAATAAATCATTTTCAAGCAGCCGCTAGCTTCCAAATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGTTGTGGTTCCCTTGTTACTGTTGCGCGTCAGTTATGATGTTTCGCACGCAAAGTAATATTTTGACCTCAAAAAACGGCACGATGTTTGGATTTATGATTTCTAGAAGGAGATGTCAAGTTTTTTTTTTTGTCATTTTTCGGGCAAATAATTCGGAGGGTACAAAAATTTAGGGGTTATTGGGGTACAAAGCAATTTAGGGGTGCAAAATCTCCAATTCAGGGGTACGAAATACTTGAAATAGGCTTAATTTTGTACCCCCGAATTGTGTATTTTGTACCCCTAAATCACTTTGTACCCCCTTGTACCCCCGAATCG</canonical>
            <polymorphic>TTCGGAAATGAGGAATTTGTGGATTTCGAAAAAAAATTCCATATCTTCTATCTGAGGTACAGTACAGAAACTAGTGAAGGCTATAAAATCTATATGAATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTTTCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACGAAACGAAAGCTCCGGCGCCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATACAATTTTTGATTACATTTTTTGTGTTTTTCATTGTTTTTTCCGTTTAATAAATCATTTTCAAGCAGCCGCTAGCTTCCAAATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTRTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGTTGTGGTTCCCTTGTTACTGTTGCGCGTCAGTTATGATGTTTCGCACGCAAAGTAATATTTTGACCTCAAAAAACGGCACGATGTTTGGATTTATGATTTCTAGAAGGAGATGTCAAGTTTTTTTTTTTGTCATTTTTCGGGCAAATAATTCGGAGGGTACAAAAATTTAGGGGTTATTGGGGTACAAAGCAATTTAGGGGTGCAAAATCTCCAATTCAGGGGTACGAAATACTTGAAATAGGCTTAATTTTGTACCCCCGAATTGTGTATTTTGTACCCCTAAATCACTTTGTACCCCCTTGTACCCCCGAATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGACATGTTCCGATGTACC</pcr_primer_p1>
		<pcr_primer_p2>ACACCTCCGAGTTATTTCAGT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>CAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGT</canonical_amplicon>
		<polymorphic_amplicon>CAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTRTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26185</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>471544</contig_pos>
        <strand></strand>
        <context>acgttcaaaa[A/G]gcttttagat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAA</left_flank>
        <right_flank>GCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTACAGAAACTAGTGAAGGCTATAAAATCTATATGAATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTTTCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACGAAACGAAAGCTCCGGCGCCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATACAATTTTTGATTACATTTTTTGTGTTTTTCATTGTTTTTTCCGTTTAATAAATCATTTTCAAGCAGCCGCTAGCTTCCAAATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGTTGTGGTTCCCTTGTTACTGTTGCGCGTCAGTTATGATGTTTCGCACGCAAAGTAATATTTTGACCTCAAAAAACGGCACGATGTTTGGATTTATGATTTCTAGAAGGAGATGTCAAGTTTTTTTTTTTGTCATTTTTCGGGCAAATAATTCGGAGGGTACAAAAATTTAGGGGTTATTGGGGTACAAAGCAATTTAGGGGTGCAAAATCTCCAATTCAGGGGTACGAAATACTTGAAATAGGCTTAATTTTGTACCCCCGAATTGTGTATTTTGTACCCCTAAATCACTTTGTACCCCCTTGTACCCCCGAATCGTTGTACCTTCCGAATTATTTGCCCATTTTTCGCTCTATTTTCATAGATTTTTTCATAAAA</canonical>
            <polymorphic>AGTACAGAAACTAGTGAAGGCTATAAAATCTATATGAATTGTTTCAGTTCCCTAGCCGTTATCCTACAGCGTCTTCTTCGTCTTTTTCTCCCCTGGATCGTCATCGAAAAAGGCGAAAACGGACGAAACGAAAGCTCCGGCGCCGCTCCAGCCAACACGACTACATTGGAAGGGAAAAATACAATTTTTGATTACATTTTTTGTGTTTTTCATTGTTTTTTCCGTTTAATAAATCATTTTCAAGCAGCCGCTAGCTTCCAAATTCGAAAAAATATATGGTAATTATTGCTCTCGCGGCAAGCCAATTGTAGAAGATTCGCTCTCGATAGGCCGAATATTGGCCGTTTGCGGTGGCGCTTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGACATGTTCCGATGTACCCATGGCGATTTTTCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAARGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGTTGTGGTTCCCTTGTTACTGTTGCGCGTCAGTTATGATGTTTCGCACGCAAAGTAATATTTTGACCTCAAAAAACGGCACGATGTTTGGATTTATGATTTCTAGAAGGAGATGTCAAGTTTTTTTTTTTGTCATTTTTCGGGCAAATAATTCGGAGGGTACAAAAATTTAGGGGTTATTGGGGTACAAAGCAATTTAGGGGTGCAAAATCTCCAATTCAGGGGTACGAAATACTTGAAATAGGCTTAATTTTGTACCCCCGAATTGTGTATTTTGTACCCCTAAATCACTTTGTACCCCCTTGTACCCCCGAATCGTTGTACCTTCCGAATTATTTGCCCATTTTTCGCTCTATTTTCATAGATTTTTTCATAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>499 247 134 120</canonical_bands>
                <polymorphic_bands>746 134 120</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>366 133 121 96 79 47 39 35 29 20 17 11 7</canonical_bands>
                <polymorphic_bands>487 133 96 79 47 39 35 29 20 17 11 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGCAAACAATATTTCACCT</pcr_primer_p1>
		<pcr_primer_p2>GTGCGAAACATCATAACTGAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAAAGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGTTGTGGTTCCCTTGTTACTGTTGCGCGTCAGTTATGATGTTTCGCAC</canonical_amplicon>
		<polymorphic_amplicon>TCGCAAACAATATTTCACCTGTTATAGACGCTGCGCGAATCACCTGTGCCACGCTGCCGACATTATCACTACGTTCAAAARGCTTTTAGATGTTAGGCAATCTCTAGACTAATTTCGTAGGGAATTTGGAGAGGGAAAGTGTGGTAAAGCATGCAAATCAACTGAATTCAGTACTAAAACTTTGGACTGAAATAACTCGGAGGTGTTGTGGTTCCCTTGTTACTGTTGCGCGTCAGTTATGATGTTTCGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26186</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>473215</contig_pos>
        <strand>+</strand>
        <context>AGCACGACTG[C/T]TTAAAATTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGATATTTTGGTTCTTGTGAAGTTTCCATTGATGTGAGTAGCACGACTG</left_flank>
        <right_flank>TTAAAATTTGAAATGAAAGCCATCAGAGCGCGGTTGCAATTAAAAATATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCTTCAGTGTAGAACTTGTGAGTTCCATTTTTTATTCGAATTTCCTGGAAATATTGGAATTTCAAAAATATCTGATAATGATAATTTTTGTTTACTGAATTTCCCGGAATTTCTTTGAACTTCTGGTATTATCTATTCCAATAGTTGACTCGAATAAATTTCTGAAATATCTTAAAATGTCGAAGAAATTCTGGATTTCCTTATTCTAGAAATTCTAGATTTCCTTATTACTAAATTTCTTAAAATTTCTGGAATTTCAATTTTTCCAAATTTTCAGCGATCCTACAATGTTTTCAGTGCTTTTTCCATTTGTTCTGTTCAGCTGGAACTTTGATGAATGAAGTTTTCAATGTGGGAAATACCCATATAAGAAGTGAATGTTATGACCAAATTGCGTTTTATGTATTTTTTCAAGCCGCGCAAGGATTGCTCATGCTTATTATAGTTTTGGATATTTTGGTTCTTGTGAAGTTTCCATTGATGTGAGTAGCACGACTGTTTAAAATTTGAAATGAAAGCCATCAGAGCGCGGTTGCAATTAAAAATATTATTTGAAAATTTCAGCTATCGTAACCTTTCCACAGCAACTTATATCGCGTTCACCGTTTTCCCAACTTTTATTTTCTCGATTTTCACCACATTCTATGGATTTCTAGCCACCAACGATGATATCATATTTTCTTGTTCTCCAAAAACCGCTCTCGGTTTAGAAGTCAGCATATTTTACAAATACTTATACATATTTCTGGCTAATATTATACTAATCTTATATATCATTTTATTACACACATTTCATTTAAAAAGTCGTACTCATACTGGTCAAATGAGCTCTCTGAAAACCATGAAACGTCTACAGATTACTGTAGTAATTTTTATTTTCACCTGGTTTTTCAGCCAAGTTTTTGGACTTGTTATACTGAAAGCTAGCGAACTTTCAGATCTTCTCGGAATCATTATAGTTCATGACGTAAGCCCAAAAAAGCTAAAGTTGATTCCAGA</canonical>
            <polymorphic>CCCTTCAGTGTAGAACTTGTGAGTTCCATTTTTTATTCGAATTTCCTGGAAATATTGGAATTTCAAAAATATCTGATAATGATAATTTTTGTTTACTGAATTTCCCGGAATTTCTTTGAACTTCTGGTATTATCTATTCCAATAGTTGACTCGAATAAATTTCTGAAATATCTTAAAATGTCGAAGAAATTCTGGATTTCCTTATTCTAGAAATTCTAGATTTCCTTATTACTAAATTTCTTAAAATTTCTGGAATTTCAATTTTTCCAAATTTTCAGCGATCCTACAATGTTTTCAGTGCTTTTTCCATTTGTTCTGTTCAGCTGGAACTTTGATGAATGAAGTTTTCAATGTGGGAAATACCCATATAAGAAGTGAATGTTATGACCAAATTGCGTTTTATGTATTTTTTCAAGCCGCGCAAGGATTGCTCATGCTTATTATAGTTTTGGATATTTTGGTTCTTGTGAAGTTTCCATTGATGTGAGTAGCACGACTGYTTAAAATTTGAAATGAAAGCCATCAGAGCGCGGTTGCAATTAAAAATATTATTTGAAAATTTCAGCTATCGTAACCTTTCCACAGCAACTTATATCGCGTTCACCGTTTTCCCAACTTTTATTTTCTCGATTTTCACCACATTCTATGGATTTCTAGCCACCAACGATGATATCATATTTTCTTGTTCTCCAAAAACCGCTCTCGGTTTAGAAGTCAGCATATTTTACAAATACTTATACATATTTCTGGCTAATATTATACTAATCTTATATATCATTTTATTACACACATTTCATTTAAAAAGTCGTACTCATACTGGTCAAATGAGCTCTCTGAAAACCATGAAACGTCTACAGATTACTGTAGTAATTTTTATTTTCACCTGGTTTTTCAGCCAAGTTTTTGGACTTGTTATACTGAAAGCTAGCGAACTTTCAGATCTTCTCGGAATCATTATAGTTCATGACGTAAGCCCAAAAAAGCTAAAGTTGATTCCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 297 201</canonical_bands>
                <polymorphic_bands>799 201</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>498 258 137 107</canonical_bands>
                <polymorphic_bands>605 258 137</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGGGAAATACCCATATAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TATAAGTTGCTGTGGAAAGGTTA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTGGGAAATACCCATATAAGAAGTGAATGTTATGACCAAATTGCGTTTTATGTATTTTTTCAAGCCGCGCAAGGATTGCTCATGCTTATTATAGTTTTGGATATTTTGGTTCTTGTGAAGTTTCCATTGATGTGAGTAGCACGACTGTTTAAAATTTGAAATGAAAGCCATCAGAGCGCGGTTGCAATTAAAAATATTATTTGAAAATTTCAGCTATCGTAACCTTTCCACAGCAACTTATA</canonical_amplicon>
		<polymorphic_amplicon>GTGGGAAATACCCATATAAGAAGTGAATGTTATGACCAAATTGCGTTTTATGTATTTTTTCAAGCCGCGCAAGGATTGCTCATGCTTATTATAGTTTTGGATATTTTGGTTCTTGTGAAGTTTCCATTGATGTGAGTAGCACGACTGYTTAAAATTTGAAATGAAAGCCATCAGAGCGCGGTTGCAATTAAAAATATTATTTGAAAATTTCAGCTATCGTAACCTTTCCACAGCAACTTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26187</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>473503</contig_pos>
        <strand>+</strand>
        <context>TTTTATTACA[A/C]ACATTTCATT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TACATATTTCTGGCTAATATTATACTAATCTTATATATCATTTTATTACA</left_flank>
        <right_flank>ACATTTCATTTAAAAAGTCGTACTCATACTGGTCAAATGAGCTCTCTGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTTTTCAGTGCTTTTTCCATTTGTTCTGTTCAGCTGGAACTTTGATGAATGAAGTTTTCAATGTGGGAAATACCCATATAAGAAGTGAATGTTATGACCAAATTGCGTTTTATGTATTTTTTCAAGCCGCGCAAGGATTGCTCATGCTTATTATAGTTTTGGATATTTTGGTTCTTGTGAAGTTTCCATTGATGTGAGTAGCACGACTGTTTAAAATTTGAAATGAAAGCCATCAGAGCGCGGTTGCAATTAAAAATATTATTTGAAAATTTCAGCTATCGTAACCTTTCCACAGCAACTTATATCGCGTTCACCGTTTTCCCAACTTTTATTTTCTCGATTTTCACCACATTCTATGGATTTCTAGCCACCAACGATGATATCATATTTTCTTGTTCTCCAAAAACCGCTCTCGGTTTAGAAGTCAGCATATTTTACAAATACTTATACATATTTCTGGCTAATATTATACTAATCTTATATATCATTTTATTACACACATTTCATTTAAAAAGTCGTACTCATACTGGTCAAATGAGCTCTCTGAAAACCATGAAACGTCTACAGATTACTGTAGTAATTTTTATTTTCACCTGGTTTTTCAGCCAAGTTTTTGGACTTGTTATACTGAAAGCTAGCGAACTTTCAGATCTTCTCGGAATCATTATAGTTCATGACGTAAGCCCAAAAAAGCTAAAGTTGATTCCAGAAAAATTCCAATTTTCAGTCTTTATTTGTCTGTTTATCCTACTGTAACACATTTTATATCACAATGTGGAGAAGTAAGGACTATCGGGATCATTTTTATAGGTTATGGTGCCCAAAACCAGTACAACAGACACCGAAAAACTCGGAACTTGTTTTTCAAATTAGAGCTACTACGGTCTAATGAATTCGCGTCATATTTTTGTTAGCATGAAAAATGATTCAATTTTCGTAGTTTGTGTTTAAATGAACTTTTGTGTTTTTTGAGGTTTTGCTGGGATGAGTATGTGAAA</canonical>
            <polymorphic>ATGTTTTCAGTGCTTTTTCCATTTGTTCTGTTCAGCTGGAACTTTGATGAATGAAGTTTTCAATGTGGGAAATACCCATATAAGAAGTGAATGTTATGACCAAATTGCGTTTTATGTATTTTTTCAAGCCGCGCAAGGATTGCTCATGCTTATTATAGTTTTGGATATTTTGGTTCTTGTGAAGTTTCCATTGATGTGAGTAGCACGACTGTTTAAAATTTGAAATGAAAGCCATCAGAGCGCGGTTGCAATTAAAAATATTATTTGAAAATTTCAGCTATCGTAACCTTTCCACAGCAACTTATATCGCGTTCACCGTTTTCCCAACTTTTATTTTCTCGATTTTCACCACATTCTATGGATTTCTAGCCACCAACGATGATATCATATTTTCTTGTTCTCCAAAAACCGCTCTCGGTTTAGAAGTCAGCATATTTTACAAATACTTATACATATTTCTGGCTAATATTATACTAATCTTATATATCATTTTATTACAMACATTTCATTTAAAAAGTCGTACTCATACTGGTCAAATGAGCTCTCTGAAAACCATGAAACGTCTACAGATTACTGTAGTAATTTTTATTTTCACCTGGTTTTTCAGCCAAGTTTTTGGACTTGTTATACTGAAAGCTAGCGAACTTTCAGATCTTCTCGGAATCATTATAGTTCATGACGTAAGCCCAAAAAAGCTAAAGTTGATTCCAGAAAAATTCCAATTTTCAGTCTTTATTTGTCTGTTTATCCTACTGTAACACATTTTATATCACAATGTGGAGAAGTAAGGACTATCGGGATCATTTTTATAGGTTATGGTGCCCAAAACCAGTACAACAGACACCGAAAAACTCGGAACTTGTTTTTCAAATTAGAGCTACTACGGTCTAATGAATTCGCGTCATATTTTTGTTAGCATGAAAAATGATTCAATTTTCGTAGTTTGTGTTTAAATGAACTTTTGTGTTTTTTGAGGTTTTGCTGGGATGAGTATGTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>166 127 105 93 92 89 55 42 33 31 22 22 21 21 18 17 12 12 7 7 3 3 2</canonical_bands>
                <polymorphic_bands>222 166 105 92 89 55 42 33 31 22 22 21 21 18 17 12 12 7 7 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACTTTTATTTTCTCGATTTTC</pcr_primer_p1>
		<pcr_primer_p2>GTAATCTGTAGACGTTTCATGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAACTTTTATTTTCTCGATTTTCACCACATTCTATGGATTTCTAGCCACCAACGATGATATCATATTTTCTTGTTCTCCAAAAACCGCTCTCGGTTTAGAAGTCAGCATATTTTACAAATACTTATACATATTTCTGGCTAATATTATACTAATCTTATATATCATTTTATTACACACATTTCATTTAAAAAGTCGTACTCATACTGGTCAAATGAGCTCTCTGAAAACCATGAAACGTCTACAGATTAC</canonical_amplicon>
		<polymorphic_amplicon>CAACTTTTATTTTCTCGATTTTCACCACATTCTATGGATTTCTAGCCACCAACGATGATATCATATTTTCTTGTTCTCCAAAAACCGCTCTCGGTTTAGAAGTCAGCATATTTTACAAATACTTATACATATTTCTGGCTAATATTATACTAATCTTATATATCATTTTATTACAMACATTTCATTTAAAAAGTCGTACTCATACTGGTCAAATGAGCTCTCTGAAAACCATGAAACGTCTACAGATTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26188</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>492604</contig_pos>
        <strand></strand>
        <context>ccgaaaaata[G/T]agtttcaaca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAAATCTATCAATTTCACCAAAATTAAGCAGGATTTTCACCGAAAAATA</left_flank>
        <right_flank>AGTTTCAACAAATATCTTGTAAATTGTGGAATTCCCGGAATATTTTTCAC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGATACTATTGACTTTTGAACTTTAGAAAAGGTTTGTACACTACAGTTTACACATTTTAGGATAGTATGTTTGAGTTATTTTCAAAAAAATGTATCTGGGGAGAGATATCAAAAATGTGATAGTTTTAAATATCTCATGGTAGTTCAAAAACATATTCTAAAATTACAATTTTGAAATCATTTTCAGAAGTTTTCGAAATATCTTTTTGTTTTTGGTGATGCCTGATTTTTTTTGGCTTTGCTTAATTTTTTTTGAATATGCCTAATTTTTTTGGTTATACCGTAAAATCTGTATAAGAAGGCACTGGTACTTCTATTTTTCCAAGGCAGTTTTAGAGGGCTCTTCTATGACAGGGTTCCTTCAATTAGAGCCCTTCTATTTTTCCGACCATTTTTTCCGAAAATTTTTCATCAAAAAATTCGACGAATTTCCATTCAAAATTCATGAAAATCTATCAATTTCACCAAAATTAAGCAGGATTTTCACCGAAAAATAGAGTTTCAACAAATATCTTGTAAATTGTGGAATTCCCGGAATATTTTTCACGGAAAACGTACTGAAATTCTTCAATTTCAAGACATACTTTGAAGCGGGTCCTTCGTATTACGGGGGCTCTTCTATTACAGGGGCACTTCTGTTTTTCCAAACTCTCTCTCTGAGGGTCCTTCTATCAACAGAGCCCTTCTATTAAAGGGGACCTTCTAATACATGTTTTACAGTATTTATGTTTTTTGGCAATTCTTAATTTCTTTCTTTTGCCCGATTTTTTTGGCTATGCCTAATTTTTTAGGTTTTACCTAACTTTTTTTTTGGTTATGCTCAATTTTTGGCTATGGCCAATTTTCTGGCCGTGTTTAGTCTTTTTTATTATCCTTTTTTGGGTGAATACTCTTTTGGGTCAAAAAGCATAGAAAATCAAGTAGAACCGTGCTTGTCATTTTCTGTAGTGTTTGTTACCGCTCTTTCTATCGAACAAGCCGAATATTTCTCTCTCTT</canonical>
            <polymorphic>AAATGATACTATTGACTTTTGAACTTTAGAAAAGGTTTGTACACTACAGTTTACACATTTTAGGATAGTATGTTTGAGTTATTTTCAAAAAAATGTATCTGGGGAGAGATATCAAAAATGTGATAGTTTTAAATATCTCATGGTAGTTCAAAAACATATTCTAAAATTACAATTTTGAAATCATTTTCAGAAGTTTTCGAAATATCTTTTTGTTTTTGGTGATGCCTGATTTTTTTTGGCTTTGCTTAATTTTTTTTGAATATGCCTAATTTTTTTGGTTATACCGTAAAATCTGTATAAGAAGGCACTGGTACTTCTATTTTTCCAAGGCAGTTTTAGAGGGCTCTTCTATGACAGGGTTCCTTCAATTAGAGCCCTTCTATTTTTCCGACCATTTTTTCCGAAAATTTTTCATCAAAAAATTCGACGAATTTCCATTCAAAATTCATGAAAATCTATCAATTTCACCAAAATTAAGCAGGATTTTCACCGAAAAATAKAGTTTCAACAAATATCTTGTAAATTGTGGAATTCCCGGAATATTTTTCACGGAAAACGTACTGAAATTCTTCAATTTCAAGACATACTTTGAAGCGGGTCCTTCGTATTACGGGGGCTCTTCTATTACAGGGGCACTTCTGTTTTTCCAAACTCTCTCTCTGAGGGTCCTTCTATCAACAGAGCCCTTCTATTAAAGGGGACCTTCTAATACATGTTTTACAGTATTTATGTTTTTTGGCAATTCTTAATTTCTTTCTTTTGCCCGATTTTTTTGGCTATGCCTAATTTTTTAGGTTTTACCTAACTTTTTTTTTGGTTATGCTCAATTTTTGGCTATGGCCAATTTTCTGGCCGTGTTTAGTCTTTTTTATTATCCTTTTTTGGGTGAATACTCTTTTGGGTCAAAAAGCATAGAAAATCAAGTAGAACCGTGCTTGTCATTTTCTGTAGTGTTTGTTACCGCTCTTTCTATCGAACAAGCCGAATATTTCTCTCTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGGCTTTGCTTAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATAGAAGAGCCCCCGTAATA</pcr_primer_p2>
		<pcr_amplicon_size>392</pcr_amplicon_size>
		<canonical_amplicon>TTTTGGCTTTGCTTAATTTTTTTTGAATATGCCTAATTTTTTTGGTTATACCGTAAAATCTGTATAAGAAGGCACTGGTACTTCTATTTTTCCAAGGCAGTTTTAGAGGGCTCTTCTATGACAGGGTTCCTTCAATTAGAGCCCTTCTATTTTTCCGACCATTTTTTCCGAAAATTTTTCATCAAAAAATTCGACGAATTTCCATTCAAAATTCATGAAAATCTATCAATTTCACCAAAATTAAGCAGGATTTTCACCGAAAAATAGAGTTTCAACAAATATCTTGTAAATTGTGGAATTCCCGGAATATTTTTCACGGAAAACGTACTGAAATTCTTCAATTTCAAGACATACTTTGAAGCGGGTCCTTCGTATTACGGGGGCTCTTCTAT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGGCTTTGCTTAATTTTTTTTGAATATGCCTAATTTTTTTGGTTATACCGTAAAATCTGTATAAGAAGGCACTGGTACTTCTATTTTTCCAAGGCAGTTTTAGAGGGCTCTTCTATGACAGGGTTCCTTCAATTAGAGCCCTTCTATTTTTCCGACCATTTTTTCCGAAAATTTTTCATCAAAAAATTCGACGAATTTCCATTCAAAATTCATGAAAATCTATCAATTTCACCAAAATTAAGCAGGATTTTCACCGAAAAATAKAGTTTCAACAAATATCTTGTAAATTGTGGAATTCCCGGAATATTTTTCACGGAAAACGTACTGAAATTCTTCAATTTCAAGACATACTTTGAAGCGGGTCCTTCGTATTACGGGGGCTCTTCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26189</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>492739</contig_pos>
        <strand>+</strand>
        <context>TTACAGGGGC[A/C]CTTCTGTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TACTTTGAAGCGGGTCCTTCGTATTACGGGGGCTCTTCTATTACAGGGGC</left_flank>
        <right_flank>CTTCTGTTTTTCCAAACTCTCTCTCTGAGGGTCCTTCTATCAACAGAGCC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCATGGTAGTTCAAAAACATATTCTAAAATTACAATTTTGAAATCATTTTCAGAAGTTTTCGAAATATCTTTTTGTTTTTGGTGATGCCTGATTTTTTTTGGCTTTGCTTAATTTTTTTTGAATATGCCTAATTTTTTTGGTTATACCGTAAAATCTGTATAAGAAGGCACTGGTACTTCTATTTTTCCAAGGCAGTTTTAGAGGGCTCTTCTATGACAGGGTTCCTTCAATTAGAGCCCTTCTATTTTTCCGACCATTTTTTCCGAAAATTTTTCATCAAAAAATTCGACGAATTTCCATTCAAAATTCATGAAAATCTATCAATTTCACCAAAATTAAGCAGGATTTTCACCGAAAAATAGAGTTTCAACAAATATCTTGTAAATTGTGGAATTCCCGGAATATTTTTCACGGAAAACGTACTGAAATTCTTCAATTTCAAGACATACTTTGAAGCGGGTCCTTCGTATTACGGGGGCTCTTCTATTACAGGGGCACTTCTGTTTTTCCAAACTCTCTCTCTGAGGGTCCTTCTATCAACAGAGCCCTTCTATTAAAGGGGACCTTCTAATACATGTTTTACAGTATTTATGTTTTTTGGCAATTCTTAATTTCTTTCTTTTGCCCGATTTTTTTGGCTATGCCTAATTTTTTAGGTTTTACCTAACTTTTTTTTTGGTTATGCTCAATTTTTGGCTATGGCCAATTTTCTGGCCGTGTTTAGTCTTTTTTATTATCCTTTTTTGGGTGAATACTCTTTTGGGTCAAAAAGCATAGAAAATCAAGTAGAACCGTGCTTGTCATTTTCTGTAGTGTTTGTTACCGCTCTTTCTATCGAACAAGCCGAATATTTCTCTCTCTTCAAAACCGGTACCATATCCTCTTGAAACTACAAATTCCAATTTTCATAGCTCAGTTATCTCTTCTGACAGTACTTTTCCGTGTACTTTTCTTATCCCATTCTGGACTCCCAGACCAGAATCTTTCTTCTCCTATT</canonical>
            <polymorphic>TCTCATGGTAGTTCAAAAACATATTCTAAAATTACAATTTTGAAATCATTTTCAGAAGTTTTCGAAATATCTTTTTGTTTTTGGTGATGCCTGATTTTTTTTGGCTTTGCTTAATTTTTTTTGAATATGCCTAATTTTTTTGGTTATACCGTAAAATCTGTATAAGAAGGCACTGGTACTTCTATTTTTCCAAGGCAGTTTTAGAGGGCTCTTCTATGACAGGGTTCCTTCAATTAGAGCCCTTCTATTTTTCCGACCATTTTTTCCGAAAATTTTTCATCAAAAAATTCGACGAATTTCCATTCAAAATTCATGAAAATCTATCAATTTCACCAAAATTAAGCAGGATTTTCACCGAAAAATAGAGTTTCAACAAATATCTTGTAAATTGTGGAATTCCCGGAATATTTTTCACGGAAAACGTACTGAAATTCTTCAATTTCAAGACATACTTTGAAGCGGGTCCTTCGTATTACGGGGGCTCTTCTATTACAGGGGCMCTTCTGTTTTTCCAAACTCTCTCTCTGAGGGTCCTTCTATCAACAGAGCCCTTCTATTAAAGGGGACCTTCTAATACATGTTTTACAGTATTTATGTTTTTTGGCAATTCTTAATTTCTTTCTTTTGCCCGATTTTTTTGGCTATGCCTAATTTTTTAGGTTTTACCTAACTTTTTTTTTGGTTATGCTCAATTTTTGGCTATGGCCAATTTTCTGGCCGTGTTTAGTCTTTTTTATTATCCTTTTTTGGGTGAATACTCTTTTGGGTCAAAAAGCATAGAAAATCAAGTAGAACCGTGCTTGTCATTTTCTGTAGTGTTTGTTACCGCTCTTTCTATCGAACAAGCCGAATATTTCTCTCTCTTCAAAACCGGTACCATATCCTCTTGAAACTACAAATTCCAATTTTCATAGCTCAGTTATCTCTTCTGACAGTACTTTTCCGTGTACTTTTCTTATCCCATTCTGGACTCCCAGACCAGAATCTTTCTTCTCCTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>450 242 210 50 31 17</canonical_bands>
                <polymorphic_bands>450 242 210 67 31</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>222 160 129 86 86 86 53 46 39 31 22 21 19</canonical_bands>
                <polymorphic_bands>308 160 129 86 86 53 46 39 31 22 21 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGGCTTTGCTTAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CCTTTAATAGAAGGGCTCTGT</pcr_primer_p2>
		<pcr_amplicon_size>465</pcr_amplicon_size>
		<canonical_amplicon>TTTTGGCTTTGCTTAATTTTTTTTGAATATGCCTAATTTTTTTGGTTATACCGTAAAATCTGTATAAGAAGGCACTGGTACTTCTATTTTTCCAAGGCAGTTTTAGAGGGCTCTTCTATGACAGGGTTCCTTCAATTAGAGCCCTTCTATTTTTCCGACCATTTTTTCCGAAAATTTTTCATCAAAAAATTCGACGAATTTCCATTCAAAATTCATGAAAATCTATCAATTTCACCAAAATTAAGCAGGATTTTCACCGAAAAATAGAGTTTCAACAAATATCTTGTAAATTGTGGAATTCCCGGAATATTTTTCACGGAAAACGTACTGAAATTCTTCAATTTCAAGACATACTTTGAAGCGGGTCCTTCGTATTACGGGGGCTCTTCTATTACAGGGGCACTTCTGTTTTTCCAAACTCTCTCTCTGAGGGTCCTTCTATCAACAGAGCCCTTCTATTAAAGG</canonical_amplicon>
		<polymorphic_amplicon>TTTTGGCTTTGCTTAATTTTTTTTGAATATGCCTAATTTTTTTGGTTATACCGTAAAATCTGTATAAGAAGGCACTGGTACTTCTATTTTTCCAAGGCAGTTTTAGAGGGCTCTTCTATGACAGGGTTCCTTCAATTAGAGCCCTTCTATTTTTCCGACCATTTTTTCCGAAAATTTTTCATCAAAAAATTCGACGAATTTCCATTCAAAATTCATGAAAATCTATCAATTTCACCAAAATTAAGCAGGATTTTCACCGAAAAATAGAGTTTCAACAAATATCTTGTAAATTGTGGAATTCCCGGAATATTTTTCACGGAAAACGTACTGAAATTCTTCAATTTCAAGACATACTTTGAAGCGGGTCCTTCGTATTACGGGGGCTCTTCTATTACAGGGGCMCTTCTGTTTTTCCAAACTCTCTCTCTGAGGGTCCTTCTATCAACAGAGCCCTTCTATTAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26190</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>492780</contig_pos>
        <strand>+</strand>
        <context>GTCCTTCTAT[C/T]AACAGAGCCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACAGGGGCACTTCTGTTTTTCCAAACTCTCTCTCTGAGGGTCCTTCTAT</left_flank>
        <right_flank>AACAGAGCCCTTCTATTAAAGGGGACCTTCTAATACATGTTTTACAGTAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATCATTTTCAGAAGTTTTCGAAATATCTTTTTGTTTTTGGTGATGCCTGATTTTTTTTGGCTTTGCTTAATTTTTTTTGAATATGCCTAATTTTTTTGGTTATACCGTAAAATCTGTATAAGAAGGCACTGGTACTTCTATTTTTCCAAGGCAGTTTTAGAGGGCTCTTCTATGACAGGGTTCCTTCAATTAGAGCCCTTCTATTTTTCCGACCATTTTTTCCGAAAATTTTTCATCAAAAAATTCGACGAATTTCCATTCAAAATTCATGAAAATCTATCAATTTCACCAAAATTAAGCAGGATTTTCACCGAAAAATAGAGTTTCAACAAATATCTTGTAAATTGTGGAATTCCCGGAATATTTTTCACGGAAAACGTACTGAAATTCTTCAATTTCAAGACATACTTTGAAGCGGGTCCTTCGTATTACGGGGGCTCTTCTATTACAGGGGCACTTCTGTTTTTCCAAACTCTCTCTCTGAGGGTCCTTCTATCAACAGAGCCCTTCTATTAAAGGGGACCTTCTAATACATGTTTTACAGTATTTATGTTTTTTGGCAATTCTTAATTTCTTTCTTTTGCCCGATTTTTTTGGCTATGCCTAATTTTTTAGGTTTTACCTAACTTTTTTTTTGGTTATGCTCAATTTTTGGCTATGGCCAATTTTCTGGCCGTGTTTAGTCTTTTTTATTATCCTTTTTTGGGTGAATACTCTTTTGGGTCAAAAAGCATAGAAAATCAAGTAGAACCGTGCTTGTCATTTTCTGTAGTGTTTGTTACCGCTCTTTCTATCGAACAAGCCGAATATTTCTCTCTCTTCAAAACCGGTACCATATCCTCTTGAAACTACAAATTCCAATTTTCATAGCTCAGTTATCTCTTCTGACAGTACTTTTCCGTGTACTTTTCTTATCCCATTCTGGACTCCCAGACCAGAATCTTTCTTCTCCTATTTTCTTCTATTCCAAAGACAAAACTATCTTCTTTAAAAAGCG</canonical>
            <polymorphic>GAAATCATTTTCAGAAGTTTTCGAAATATCTTTTTGTTTTTGGTGATGCCTGATTTTTTTTGGCTTTGCTTAATTTTTTTTGAATATGCCTAATTTTTTTGGTTATACCGTAAAATCTGTATAAGAAGGCACTGGTACTTCTATTTTTCCAAGGCAGTTTTAGAGGGCTCTTCTATGACAGGGTTCCTTCAATTAGAGCCCTTCTATTTTTCCGACCATTTTTTCCGAAAATTTTTCATCAAAAAATTCGACGAATTTCCATTCAAAATTCATGAAAATCTATCAATTTCACCAAAATTAAGCAGGATTTTCACCGAAAAATAGAGTTTCAACAAATATCTTGTAAATTGTGGAATTCCCGGAATATTTTTCACGGAAAACGTACTGAAATTCTTCAATTTCAAGACATACTTTGAAGCGGGTCCTTCGTATTACGGGGGCTCTTCTATTACAGGGGCACTTCTGTTTTTCCAAACTCTCTCTCTGAGGGTCCTTCTATYAACAGAGCCCTTCTATTAAAGGGGACCTTCTAATACATGTTTTACAGTATTTATGTTTTTTGGCAATTCTTAATTTCTTTCTTTTGCCCGATTTTTTTGGCTATGCCTAATTTTTTAGGTTTTACCTAACTTTTTTTTTGGTTATGCTCAATTTTTGGCTATGGCCAATTTTCTGGCCGTGTTTAGTCTTTTTTATTATCCTTTTTTGGGTGAATACTCTTTTGGGTCAAAAAGCATAGAAAATCAAGTAGAACCGTGCTTGTCATTTTCTGTAGTGTTTGTTACCGCTCTTTCTATCGAACAAGCCGAATATTTCTCTCTCTTCAAAACCGGTACCATATCCTCTTGAAACTACAAATTCCAATTTTCATAGCTCAGTTATCTCTTCTGACAGTACTTTTCCGTGTACTTTTCTTATCCCATTCTGGACTCCCAGACCAGAATCTTTCTTCTCCTATTTTCTTCTATTCCAAAGACAAAACTATCTTCTTTAAAAAGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTACGGGGGCTCTTCTAT</pcr_primer_p1>
		<pcr_primer_p2>ATAGCCAAAAATTGAGCATAAC</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>TATTACGGGGGCTCTTCTATTACAGGGGCACTTCTGTTTTTCCAAACTCTCTCTCTGAGGGTCCTTCTATCAACAGAGCCCTTCTATTAAAGGGGACCTTCTAATACATGTTTTACAGTATTTATGTTTTTTGGCAATTCTTAATTTCTTTCTTTTGCCCGATTTTTTTGGCTATGCCTAATTTTTTAGGTTTTACCTAACTTTTTTTTTGGTTATGCTCAATTTTTGGCTAT</canonical_amplicon>
		<polymorphic_amplicon>TATTACGGGGGCTCTTCTATTACAGGGGCACTTCTGTTTTTCCAAACTCTCTCTCTGAGGGTCCTTCTATYAACAGAGCCCTTCTATTAAAGGGGACCTTCTAATACATGTTTTACAGTATTTATGTTTTTTGGCAATTCTTAATTTCTTTCTTTTGCCCGATTTTTTTGGCTATGCCTAATTTTTTAGGTTTTACCTAACTTTTTTTTTGGTTATGCTCAATTTTTGGCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26191</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>492805</contig_pos>
        <strand>+</strand>
        <context>ATTAAAGGGG[A/G]CCTTCTAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTCTCTCTCTGAGGGTCCTTCTATCAACAGAGCCCTTCTATTAAAGGGG</left_flank>
        <right_flank>CCTTCTAATACATGTTTTACAGTATTTATGTTTTTTGGCAATTCTTAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATCTTTTTGTTTTTGGTGATGCCTGATTTTTTTTGGCTTTGCTTAATTTTTTTTGAATATGCCTAATTTTTTTGGTTATACCGTAAAATCTGTATAAGAAGGCACTGGTACTTCTATTTTTCCAAGGCAGTTTTAGAGGGCTCTTCTATGACAGGGTTCCTTCAATTAGAGCCCTTCTATTTTTCCGACCATTTTTTCCGAAAATTTTTCATCAAAAAATTCGACGAATTTCCATTCAAAATTCATGAAAATCTATCAATTTCACCAAAATTAAGCAGGATTTTCACCGAAAAATAGAGTTTCAACAAATATCTTGTAAATTGTGGAATTCCCGGAATATTTTTCACGGAAAACGTACTGAAATTCTTCAATTTCAAGACATACTTTGAAGCGGGTCCTTCGTATTACGGGGGCTCTTCTATTACAGGGGCACTTCTGTTTTTCCAAACTCTCTCTCTGAGGGTCCTTCTATCAACAGAGCCCTTCTATTAAAGGGGACCTTCTAATACATGTTTTACAGTATTTATGTTTTTTGGCAATTCTTAATTTCTTTCTTTTGCCCGATTTTTTTGGCTATGCCTAATTTTTTAGGTTTTACCTAACTTTTTTTTTGGTTATGCTCAATTTTTGGCTATGGCCAATTTTCTGGCCGTGTTTAGTCTTTTTTATTATCCTTTTTTGGGTGAATACTCTTTTGGGTCAAAAAGCATAGAAAATCAAGTAGAACCGTGCTTGTCATTTTCTGTAGTGTTTGTTACCGCTCTTTCTATCGAACAAGCCGAATATTTCTCTCTCTTCAAAACCGGTACCATATCCTCTTGAAACTACAAATTCCAATTTTCATAGCTCAGTTATCTCTTCTGACAGTACTTTTCCGTGTACTTTTCTTATCCCATTCTGGACTCCCAGACCAGAATCTTTCTTCTCCTATTTTCTTCTATTCCAAAGACAAAACTATCTTCTTTAAAAAGCGCTCATATTCTTATTCCCCATTCGCT</canonical>
            <polymorphic>ATATCTTTTTGTTTTTGGTGATGCCTGATTTTTTTTGGCTTTGCTTAATTTTTTTTGAATATGCCTAATTTTTTTGGTTATACCGTAAAATCTGTATAAGAAGGCACTGGTACTTCTATTTTTCCAAGGCAGTTTTAGAGGGCTCTTCTATGACAGGGTTCCTTCAATTAGAGCCCTTCTATTTTTCCGACCATTTTTTCCGAAAATTTTTCATCAAAAAATTCGACGAATTTCCATTCAAAATTCATGAAAATCTATCAATTTCACCAAAATTAAGCAGGATTTTCACCGAAAAATAGAGTTTCAACAAATATCTTGTAAATTGTGGAATTCCCGGAATATTTTTCACGGAAAACGTACTGAAATTCTTCAATTTCAAGACATACTTTGAAGCGGGTCCTTCGTATTACGGGGGCTCTTCTATTACAGGGGCACTTCTGTTTTTCCAAACTCTCTCTCTGAGGGTCCTTCTATCAACAGAGCCCTTCTATTAAAGGGGRCCTTCTAATACATGTTTTACAGTATTTATGTTTTTTGGCAATTCTTAATTTCTTTCTTTTGCCCGATTTTTTTGGCTATGCCTAATTTTTTAGGTTTTACCTAACTTTTTTTTTGGTTATGCTCAATTTTTGGCTATGGCCAATTTTCTGGCCGTGTTTAGTCTTTTTTATTATCCTTTTTTGGGTGAATACTCTTTTGGGTCAAAAAGCATAGAAAATCAAGTAGAACCGTGCTTGTCATTTTCTGTAGTGTTTGTTACCGCTCTTTCTATCGAACAAGCCGAATATTTCTCTCTCTTCAAAACCGGTACCATATCCTCTTGAAACTACAAATTCCAATTTTCATAGCTCAGTTATCTCTTCTGACAGTACTTTTCCGTGTACTTTTCTTATCCCATTCTGGACTCCCAGACCAGAATCTTTCTTCTCCTATTTTCTTCTATTCCAAAGACAAAACTATCTTCTTTAAAAAGCGCTCATATTCTTATTCCCCATTCGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>502 396 68 34</canonical_bands>
                <polymorphic_bands>536 396 68</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>502 396 68 34</canonical_bands>
                <polymorphic_bands>536 396 68</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTACGGGGGCTCTTCTAT</pcr_primer_p1>
		<pcr_primer_p2>ATAGCCAAAAATTGAGCATAAC</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>TATTACGGGGGCTCTTCTATTACAGGGGCACTTCTGTTTTTCCAAACTCTCTCTCTGAGGGTCCTTCTATCAACAGAGCCCTTCTATTAAAGGGGACCTTCTAATACATGTTTTACAGTATTTATGTTTTTTGGCAATTCTTAATTTCTTTCTTTTGCCCGATTTTTTTGGCTATGCCTAATTTTTTAGGTTTTACCTAACTTTTTTTTTGGTTATGCTCAATTTTTGGCTAT</canonical_amplicon>
		<polymorphic_amplicon>TATTACGGGGGCTCTTCTATTACAGGGGCACTTCTGTTTTTCCAAACTCTCTCTCTGAGGGTCCTTCTATCAACAGAGCCCTTCTATTAAAGGGGRCCTTCTAATACATGTTTTACAGTATTTATGTTTTTTGGCAATTCTTAATTTCTTTCTTTTGCCCGATTTTTTTGGCTATGCCTAATTTTTTAGGTTTTACCTAACTTTTTTTTTGGTTATGCTCAATTTTTGGCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26192</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>494431</contig_pos>
        <strand></strand>
        <context>Tatcagcctg[T/G]ttgccgcgcc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTTTTCCTAGCGGTGATTTTTCATCGATTTTCATTGAAATTATCAGCCTG</left_flank>
        <right_flank>TTGCCGCGCCTCTGGCTCTTCAAACAGCTGGCTGGTGCGCCTTCGGCGCG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTGATACATTTCCATTTTTCTGGTCTTCCTCCATTTCCTCCCAATGGTTCTCCTCTCTCATTGCTTTTTCTTCTTTTCTTCGAACAAGTTTTTTTTCTTCTTATCCCATTTCTTGTTTCTTAGAATGACCCAGCACTAATATGTATGCTCTCTATGTGTTAACGCAAATTTCCGCCCCGAGATGCGAAAGCGCTGTTTTTAATGAATATGAATATAGATAGAGATGTACCTCTTCTCACTTTCGCGTCCTCCAGTTTCTTTTTCCTCATTTTTTTTGGCTCCCAACAAATTTTGAGCACTAAAAGTTTAGACTTAAAAGAAACAGTTTTCTAAAAGTACATTTTGCAATTCGAAATACTTTATGTATAGGTTTTGAGTGATAACAGAAGACTGCATGGTTGGTCTTTTGGACTGATAAGAACTATTTTCTTTACGCGTTTTCTGGGTTTTTCCTAGCGGTGATTTTTCATCGATTTTCATTGAAATTATCAGCCTGTTTGCCGCGCCTCTGGCTCTTCAAACAGCTGGCTGGTGCGCCTTCGGCGCGATTTGACCTATTTATTTTAATGTTCGTCGCTTCGGTCCTCACTCTTTCCCGAAAGATCACGTCAATTTATATTTAATTTTCAAGCTTTTCAAAAATGTATGGACGGAAATAAAAATATGAAAATTCCAGCTAGTTTTTATGAGGAACGAAAGATGAAAATGTCAGAAGTTAAAACCGAAAATATTGACCACTAGAATTCCACAAGACGCAGTACCGCGAAAGAAATGATATAATTATTGCATTTTTGGTAAAAGTGTACCGTAAACATTCTAATTGAACGATCCCTAATTTTAAAGAAAGTAGAAACCATTAAGAAAACTAAACATACAGTAAAACCTTTATTAGAAGGGCCAGCCTTTCTATTGTTTCAAGGTATCTAGAGAGAGCCCTTCTATTAGAGGGGCCCTTTTATTTTTCCGGTCATTTTTTTCCGAAATTTTTTATCAAAAA</canonical>
            <polymorphic>TATTTGATACATTTCCATTTTTCTGGTCTTCCTCCATTTCCTCCCAATGGTTCTCCTCTCTCATTGCTTTTTCTTCTTTTCTTCGAACAAGTTTTTTTTCTTCTTATCCCATTTCTTGTTTCTTAGAATGACCCAGCACTAATATGTATGCTCTCTATGTGTTAACGCAAATTTCCGCCCCGAGATGCGAAAGCGCTGTTTTTAATGAATATGAATATAGATAGAGATGTACCTCTTCTCACTTTCGCGTCCTCCAGTTTCTTTTTCCTCATTTTTTTTGGCTCCCAACAAATTTTGAGCACTAAAAGTTTAGACTTAAAAGAAACAGTTTTCTAAAAGTACATTTTGCAATTCGAAATACTTTATGTATAGGTTTTGAGTGATAACAGAAGACTGCATGGTTGGTCTTTTGGACTGATAAGAACTATTTTCTTTACGCGTTTTCTGGGTTTTTCCTAGCGGTGATTTTTCATCGATTTTCATTGAAATTATCAGCCTGKTTGCCGCGCCTCTGGCTCTTCAAACAGCTGGCTGGTGCGCCTTCGGCGCGATTTGACCTATTTATTTTAATGTTCGTCGCTTCGGTCCTCACTCTTTCCCGAAAGATCACGTCAATTTATATTTAATTTTCAAGCTTTTCAAAAATGTATGGACGGAAATAAAAATATGAAAATTCCAGCTAGTTTTTATGAGGAACGAAAGATGAAAATGTCAGAAGTTAAAACCGAAAATATTGACCACTAGAATTCCACAAGACGCAGTACCGCGAAAGAAATGATATAATTATTGCATTTTTGGTAAAAGTGTACCGTAAACATTCTAATTGAACGATCCCTAATTTTAAAGAAAGTAGAAACCATTAAGAAAACTAAACATACAGTAAAACCTTTATTAGAAGGGCCAGCCTTTCTATTGTTTCAAGGTATCTAGAGAGAGCCCTTCTATTAGAGGGGCCCTTTTATTTTTCCGGTCATTTTTTTCCGAAATTTTTTATCAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTTTACGCGTTTTCTG</pcr_primer_p1>
		<pcr_primer_p2>GCTGGAATTTTCATATTTTTATTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTTTACGCGTTTTCTGGGTTTTTCCTAGCGGTGATTTTTCATCGATTTTCATTGAAATTATCAGCCTGTTTGCCGCGCCTCTGGCTCTTCAAACAGCTGGCTGGTGCGCCTTCGGCGCGATTTGACCTATTTATTTTAATGTTCGTCGCTTCGGTCCTCACTCTTTCCCGAAAGATCACGTCAATTTATATTTAATTTTCAAGCTTTTCAAAAATGTATGGACGGAAATAAAAATATGAAAATTCCAGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTTTACGCGTTTTCTGGGTTTTTCCTAGCGGTGATTTTTCATCGATTTTCATTGAAATTATCAGCCTGKTTGCCGCGCCTCTGGCTCTTCAAACAGCTGGCTGGTGCGCCTTCGGCGCGATTTGACCTATTTATTTTAATGTTCGTCGCTTCGGTCCTCACTCTTTCCCGAAAGATCACGTCAATTTATATTTAATTTTCAAGCTTTTCAAAAATGTATGGACGGAAATAAAAATATGAAAATTCCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26193</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>494587</contig_pos>
        <strand>+</strand>
        <context>tgtatggacG[A/G]AAATAAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCACGTCAATTTATATTTAATTTTCAAGCTTTTCAAAAATGTATGGACG</left_flank>
        <right_flank>AAATAAAAATATGAAAATTCCAGCTAGTTTTTATGAGGAACGAAAGATGA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTGTTAACGCAAATTTCCGCCCCGAGATGCGAAAGCGCTGTTTTTAATGAATATGAATATAGATAGAGATGTACCTCTTCTCACTTTCGCGTCCTCCAGTTTCTTTTTCCTCATTTTTTTTGGCTCCCAACAAATTTTGAGCACTAAAAGTTTAGACTTAAAAGAAACAGTTTTCTAAAAGTACATTTTGCAATTCGAAATACTTTATGTATAGGTTTTGAGTGATAACAGAAGACTGCATGGTTGGTCTTTTGGACTGATAAGAACTATTTTCTTTACGCGTTTTCTGGGTTTTTCCTAGCGGTGATTTTTCATCGATTTTCATTGAAATTATCAGCCTGTTTGCCGCGCCTCTGGCTCTTCAAACAGCTGGCTGGTGCGCCTTCGGCGCGATTTGACCTATTTATTTTAATGTTCGTCGCTTCGGTCCTCACTCTTTCCCGAAAGATCACGTCAATTTATATTTAATTTTCAAGCTTTTCAAAAATGTATGGACGGAAATAAAAATATGAAAATTCCAGCTAGTTTTTATGAGGAACGAAAGATGAAAATGTCAGAAGTTAAAACCGAAAATATTGACCACTAGAATTCCACAAGACGCAGTACCGCGAAAGAAATGATATAATTATTGCATTTTTGGTAAAAGTGTACCGTAAACATTCTAATTGAACGATCCCTAATTTTAAAGAAAGTAGAAACCATTAAGAAAACTAAACATACAGTAAAACCTTTATTAGAAGGGCCAGCCTTTCTATTGTTTCAAGGTATCTAGAGAGAGCCCTTCTATTAGAGGGGCCCTTTTATTTTTCCGGTCATTTTTTTCCGAAATTTTTTATCAAAAATTAGGTGAATTTTCGCTGAGAATGCATGAATTTCACCAAAGTTAAGCAATTTTTTGAGTGGAAAAGAGTGTTCCAACGAATTCCTGTGAAATTATGGCCTAGTATTTTTCCGAGCCCTTCTCAGATGACTCTTCTATTAGAGAGGTTCTTCAATTA</canonical>
            <polymorphic>ATGTGTTAACGCAAATTTCCGCCCCGAGATGCGAAAGCGCTGTTTTTAATGAATATGAATATAGATAGAGATGTACCTCTTCTCACTTTCGCGTCCTCCAGTTTCTTTTTCCTCATTTTTTTTGGCTCCCAACAAATTTTGAGCACTAAAAGTTTAGACTTAAAAGAAACAGTTTTCTAAAAGTACATTTTGCAATTCGAAATACTTTATGTATAGGTTTTGAGTGATAACAGAAGACTGCATGGTTGGTCTTTTGGACTGATAAGAACTATTTTCTTTACGCGTTTTCTGGGTTTTTCCTAGCGGTGATTTTTCATCGATTTTCATTGAAATTATCAGCCTGTTTGCCGCGCCTCTGGCTCTTCAAACAGCTGGCTGGTGCGCCTTCGGCGCGATTTGACCTATTTATTTTAATGTTCGTCGCTTCGGTCCTCACTCTTTCCCGAAAGATCACGTCAATTTATATTTAATTTTCAAGCTTTTCAAAAATGTATGGACGRAAATAAAAATATGAAAATTCCAGCTAGTTTTTATGAGGAACGAAAGATGAAAATGTCAGAAGTTAAAACCGAAAATATTGACCACTAGAATTCCACAAGACGCAGTACCGCGAAAGAAATGATATAATTATTGCATTTTTGGTAAAAGTGTACCGTAAACATTCTAATTGAACGATCCCTAATTTTAAAGAAAGTAGAAACCATTAAGAAAACTAAACATACAGTAAAACCTTTATTAGAAGGGCCAGCCTTTCTATTGTTTCAAGGTATCTAGAGAGAGCCCTTCTATTAGAGGGGCCCTTTTATTTTTCCGGTCATTTTTTTCCGAAATTTTTTATCAAAAATTAGGTGAATTTTCGCTGAGAATGCATGAATTTCACCAAAGTTAAGCAATTTTTTGAGTGGAAAAGAGTGTTCCAACGAATTCCTGTGAAATTATGGCCTAGTATTTTTCCGAGCCCTTCTCAGATGACTCTTCTATTAGAGAGGTTCTTCAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGATTTTTCATCGATTTTCAT</pcr_primer_p1>
		<pcr_primer_p2>CGGTTTTAACTTCTGACATTTT</pcr_primer_p2>
		<pcr_amplicon_size>266</pcr_amplicon_size>
		<canonical_amplicon>GTGATTTTTCATCGATTTTCATTGAAATTATCAGCCTGTTTGCCGCGCCTCTGGCTCTTCAAACAGCTGGCTGGTGCGCCTTCGGCGCGATTTGACCTATTTATTTTAATGTTCGTCGCTTCGGTCCTCACTCTTTCCCGAAAGATCACGTCAATTTATATTTAATTTTCAAGCTTTTCAAAAATGTATGGACGGAAATAAAAATATGAAAATTCCAGCTAGTTTTTATGAGGAACGAAAGATGAAAATGTCAGAAGTTAAAACCG</canonical_amplicon>
		<polymorphic_amplicon>GTGATTTTTCATCGATTTTCATTGAAATTATCAGCCTGTTTGCCGCGCCTCTGGCTCTTCAAACAGCTGGCTGGTGCGCCTTCGGCGCGATTTGACCTATTTATTTTAATGTTCGTCGCTTCGGTCCTCACTCTTTCCCGAAAGATCACGTCAATTTATATTTAATTTTCAAGCTTTTCAAAAATGTATGGACGRAAATAAAAATATGAAAATTCCAGCTAGTTTTTATGAGGAACGAAAGATGAAAATGTCAGAAGTTAAAACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26194</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>530353</contig_pos>
        <strand>+</strand>
        <context>TAAGAATTGG[A/G]tttaaattaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACATGGTTCGGAAACATCCAACGATGTGCAAGAAAACTGTAAGAATTGG</left_flank>
        <right_flank>TTTAAATTAAAAAATAAATAAACCATTGTCTTCTTACAGTTACCGGAACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGCTTTTCCAAATGACTGATAATTTATTGGATAGGTTCGCCACCAGAGAAAGTATGAATACAGTGATCTCTGTGATGCTTGTAGTCAAGTTCCTAGCGTTTCGAAGTCTCACATTCGCACTTGACATCTTTGAAGTGATCGGGGAAAACACAAATTACTATGTCATTGATATTAGCAACTTGATGATACTCATCAATTCTGCAACAAATTGCTTGATCTACCTCAAAGCAACAGAATGGCTAAGCCAACGACTTATCGAGAGAAGAACCATTAAACGAAAGAAGACGATTTGTGATTCTGGGTGAGTTCGTAAAATGGAAACAAGTATAATTATTAGAATCTGTTAGTTTCAGCCAACTGCTGGGAGACCGGTTGTCAATTCTAATCTCCTCTTGGGAGAAGGCAAACGAAATGACAAATGGCGAAATTGGAGTCAGAGTTGCGTGGAACATGGTTCGGAAACATCCAACGATGTGCAAGAAAACTGTAAGAATTGGATTTAAATTAAAAAATAAATAAACCATTGTCTTCTTACAGTTACCGGAACCCGAAAAGGTCTCTCTACTCAACGGCTCTTGCAAGCGAAGCATTGATCACGCCAAGTTCCAAGAAATTGGCGGACGGATATCCGGGTTCATCGCAGAGCTGCTTGAATTAATGCGGACTAATCAGGCGGAAAGTGTAAGGAAAAATTGAGTGTTATCTTCGCATTTGATCTCAATTTTTTTCAGTATATAATTATGCGAATCCGCCGAGTCGGAGCGGTTCACTACGACAAAGGGATTGTGTTCTCTTCATCTGTATGGAAGGAGTTCAAGTATACAATTCAGAGCATCATTTCAGAAGTGCAGTTCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTCGTAAACAGGATTATAGTTAGGGTGCATATGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAGCTTATTTCCGAAAGAACGGATAGTT</canonical>
            <polymorphic>CCAGCTTTTCCAAATGACTGATAATTTATTGGATAGGTTCGCCACCAGAGAAAGTATGAATACAGTGATCTCTGTGATGCTTGTAGTCAAGTTCCTAGCGTTTCGAAGTCTCACATTCGCACTTGACATCTTTGAAGTGATCGGGGAAAACACAAATTACTATGTCATTGATATTAGCAACTTGATGATACTCATCAATTCTGCAACAAATTGCTTGATCTACCTCAAAGCAACAGAATGGCTAAGCCAACGACTTATCGAGAGAAGAACCATTAAACGAAAGAAGACGATTTGTGATTCTGGGTGAGTTCGTAAAATGGAAACAAGTATAATTATTAGAATCTGTTAGTTTCAGCCAACTGCTGGGAGACCGGTTGTCAATTCTAATCTCCTCTTGGGAGAAGGCAAACGAAATGACAAATGGCGAAATTGGAGTCAGAGTTGCGTGGAACATGGTTCGGAAACATCCAACGATGTGCAAGAAAACTGTAAGAATTGGRTTTAAATTAAAAAATAAATAAACCATTGTCTTCTTACAGTTACCGGAACCCGAAAAGGTCTCTCTACTCAACGGCTCTTGCAAGCGAAGCATTGATCACGCCAAGTTCCAAGAAATTGGCGGACGGATATCCGGGTTCATCGCAGAGCTGCTTGAATTAATGCGGACTAATCAGGCGGAAAGTGTAAGGAAAAATTGAGTGTTATCTTCGCATTTGATCTCAATTTTTTTCAGTATATAATTATGCGAATCCGCCGAGTCGGAGCGGTTCACTACGACAAAGGGATTGTGTTCTCTTCATCTGTATGGAAGGAGTTCAAGTATACAATTCAGAGCATCATTTCAGAAGTGCAGTTCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTCGTAAACAGGATTATAGTTAGGGTGCATATGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAGCTTATTTCCGAAAGAACGGATAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTTAAAT</site>
                <isoschizomers>
                    <enzyme>SmiI</enzyme>
                    <enzyme>SwaI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCTGTTAGTTTCAGCCAACT</pcr_primer_p1>
		<pcr_primer_p2>CGTTGAGTAGAGAGACCTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>AATCTGTTAGTTTCAGCCAACTGCTGGGAGACCGGTTGTCAATTCTAATCTCCTCTTGGGAGAAGGCAAACGAAATGACAAATGGCGAAATTGGAGTCAGAGTTGCGTGGAACATGGTTCGGAAACATCCAACGATGTGCAAGAAAACTGTAAGAATTGGATTTAAATTAAAAAATAAATAAACCATTGTCTTCTTACAGTTACCGGAACCCGAAAAGGTCTCTCTACTCAACG</canonical_amplicon>
		<polymorphic_amplicon>AATCTGTTAGTTTCAGCCAACTGCTGGGAGACCGGTTGTCAATTCTAATCTCCTCTTGGGAGAAGGCAAACGAAATGACAAATGGCGAAATTGGAGTCAGAGTTGCGTGGAACATGGTTCGGAAACATCCAACGATGTGCAAGAAAACTGTAAGAATTGGRTTTAAATTAAAAAATAAATAAACCATTGTCTTCTTACAGTTACCGGAACCCGAAAAGGTCTCTCTACTCAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26195</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>530389</contig_pos>
        <strand></strand>
        <context>TTGTCTTCTT[A/G]CAGTTACCGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTGTAAGAATTGGATTTAAATTAAAAAATAAATAAACCATTGTCTTCTT</left_flank>
        <right_flank>CAGTTACCGGAACCCGAAAAGGTCTCTCTACTCAACGGCTCTTGCAAGCG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCGCCACCAGAGAAAGTATGAATACAGTGATCTCTGTGATGCTTGTAGTCAAGTTCCTAGCGTTTCGAAGTCTCACATTCGCACTTGACATCTTTGAAGTGATCGGGGAAAACACAAATTACTATGTCATTGATATTAGCAACTTGATGATACTCATCAATTCTGCAACAAATTGCTTGATCTACCTCAAAGCAACAGAATGGCTAAGCCAACGACTTATCGAGAGAAGAACCATTAAACGAAAGAAGACGATTTGTGATTCTGGGTGAGTTCGTAAAATGGAAACAAGTATAATTATTAGAATCTGTTAGTTTCAGCCAACTGCTGGGAGACCGGTTGTCAATTCTAATCTCCTCTTGGGAGAAGGCAAACGAAATGACAAATGGCGAAATTGGAGTCAGAGTTGCGTGGAACATGGTTCGGAAACATCCAACGATGTGCAAGAAAACTGTAAGAATTGGATTTAAATTAAAAAATAAATAAACCATTGTCTTCTTACAGTTACCGGAACCCGAAAAGGTCTCTCTACTCAACGGCTCTTGCAAGCGAAGCATTGATCACGCCAAGTTCCAAGAAATTGGCGGACGGATATCCGGGTTCATCGCAGAGCTGCTTGAATTAATGCGGACTAATCAGGCGGAAAGTGTAAGGAAAAATTGAGTGTTATCTTCGCATTTGATCTCAATTTTTTTCAGTATATAATTATGCGAATCCGCCGAGTCGGAGCGGTTCACTACGACAAAGGGATTGTGTTCTCTTCATCTGTATGGAAGGAGTTCAAGTATACAATTCAGAGCATCATTTCAGAAGTGCAGTTCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTCGTAAACAGGATTATAGTTAGGGTGCATATGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAGCTTATTTCCGAAAGAACGGATAGTTTGGTCCACGGCAAGCTAACCGCGGCTTGTCACATTA</canonical>
            <polymorphic>GTTCGCCACCAGAGAAAGTATGAATACAGTGATCTCTGTGATGCTTGTAGTCAAGTTCCTAGCGTTTCGAAGTCTCACATTCGCACTTGACATCTTTGAAGTGATCGGGGAAAACACAAATTACTATGTCATTGATATTAGCAACTTGATGATACTCATCAATTCTGCAACAAATTGCTTGATCTACCTCAAAGCAACAGAATGGCTAAGCCAACGACTTATCGAGAGAAGAACCATTAAACGAAAGAAGACGATTTGTGATTCTGGGTGAGTTCGTAAAATGGAAACAAGTATAATTATTAGAATCTGTTAGTTTCAGCCAACTGCTGGGAGACCGGTTGTCAATTCTAATCTCCTCTTGGGAGAAGGCAAACGAAATGACAAATGGCGAAATTGGAGTCAGAGTTGCGTGGAACATGGTTCGGAAACATCCAACGATGTGCAAGAAAACTGTAAGAATTGGATTTAAATTAAAAAATAAATAAACCATTGTCTTCTTRCAGTTACCGGAACCCGAAAAGGTCTCTCTACTCAACGGCTCTTGCAAGCGAAGCATTGATCACGCCAAGTTCCAAGAAATTGGCGGACGGATATCCGGGTTCATCGCAGAGCTGCTTGAATTAATGCGGACTAATCAGGCGGAAAGTGTAAGGAAAAATTGAGTGTTATCTTCGCATTTGATCTCAATTTTTTTCAGTATATAATTATGCGAATCCGCCGAGTCGGAGCGGTTCACTACGACAAAGGGATTGTGTTCTCTTCATCTGTATGGAAGGAGTTCAAGTATACAATTCAGAGCATCATTTCAGAAGTGCAGTTCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTCGTAAACAGGATTATAGTTAGGGTGCATATGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAGCTTATTTCCGAAAGAACGGATAGTTTGGTCCACGGCAAGCTAACCGCGGCTTGTCACATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>424 356 142 50 28</canonical_bands>
                <polymorphic_bands>424 406 142 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTGCAAGAAAACTGTAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>GATCAAATGCGAAGATAACACT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATGTGCAAGAAAACTGTAAGAATTGGATTTAAATTAAAAAATAAATAAACCATTGTCTTCTTACAGTTACCGGAACCCGAAAAGGTCTCTCTACTCAACGGCTCTTGCAAGCGAAGCATTGATCACGCCAAGTTCCAAGAAATTGGCGGACGGATATCCGGGTTCATCGCAGAGCTGCTTGAATTAATGCGGACTAATCAGGCGGAAAGTGTAAGGAAAAATTGAGTGTTATCTTCGCATTTGATC</canonical_amplicon>
		<polymorphic_amplicon>ATGTGCAAGAAAACTGTAAGAATTGGATTTAAATTAAAAAATAAATAAACCATTGTCTTCTTRCAGTTACCGGAACCCGAAAAGGTCTCTCTACTCAACGGCTCTTGCAAGCGAAGCATTGATCACGCCAAGTTCCAAGAAATTGGCGGACGGATATCCGGGTTCATCGCAGAGCTGCTTGAATTAATGCGGACTAATCAGGCGGAAAGTGTAAGGAAAAATTGAGTGTTATCTTCGCATTTGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26196</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>530573</contig_pos>
        <strand>+</strand>
        <context>GCATTTGATC[C/T]CAAWTTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCAGGCGGAAAGTGTAAGGAAAAATTGAGTGTTATCTTCGCATTTGATC</left_flank>
        <right_flank>CAATTTTTTTCAGTATATAATTATGCGAATCCGCCGAGTCGGAGCGGTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACCTCAAAGCAACAGAATGGCTAAGCCAACGACTTATCGAGAGAAGAACCATTAAACGAAAGAAGACGATTTGTGATTCTGGGTGAGTTCGTAAAATGGAAACAAGTATAATTATTAGAATCTGTTAGTTTCAGCCAACTGCTGGGAGACCGGTTGTCAATTCTAATCTCCTCTTGGGAGAAGGCAAACGAAATGACAAATGGCGAAATTGGAGTCAGAGTTGCGTGGAACATGGTTCGGAAACATCCAACGATGTGCAAGAAAACTGTAAGAATTGGATTTAAATTAAAAAATAAATAAACCATTGTCTTCTTACAGTTACCGGAACCCGAAAAGGTCTCTCTACTCAACGGCTCTTGCAAGCGAAGCATTGATCACGCCAAGTTCCAAGAAATTGGCGGACGGATATCCGGGTTCATCGCAGAGCTGCTTGAATTAATGCGGACTAATCAGGCGGAAAGTGTAAGGAAAAATTGAGTGTTATCTTCGCATTTGATCTCAATTTTTTTCAGTATATAATTATGCGAATCCGCCGAGTCGGAGCGGTTCACTACGACAAAGGGATTGTGTTCTCTTCATCTGTATGGAAGGAGTTCAAGTATACAATTCAGAGCATCATTTCAGAAGTGCAGTTCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTCGTAAACAGGATTATAGTTAGGGTGCATATGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAGCTTATTTCCGAAAGAACGGATAGTTTGGTCCACGGCAAGCTAACCGCGGCTTGTCACATTAAAAACCTAATATTAAATCCATGTATTTTGCAGGAACGAGAAGCCGCACTTGATGCATGGAACATCTTCATCTCGTTCATCATTCGAGAGATGAAAATGGGAATCTGGGCGATCGGTGACACGATAGTACAGATGCCATAACTCCGATCTCCCTTTTTCGCCTGTTGCTCTCCACTGTACATTCA</canonical>
            <polymorphic>TACCTCAAAGCAACAGAATGGCTAAGCCAACGACTTATCGAGAGAAGAACCATTAAACGAAAGAAGACGATTTGTGATTCTGGGTGAGTTCGTAAAATGGAAACAAGTATAATTATTAGAATCTGTTAGTTTCAGCCAACTGCTGGGAGACCGGTTGTCAATTCTAATCTCCTCTTGGGAGAAGGCAAACGAAATGACAAATGGCGAAATTGGAGTCAGAGTTGCGTGGAACATGGTTCGGAAACATCCAACGATGTGCAAGAAAACTGTAAGAATTGGATTTAAATTAAAAAATAAATAAACCATTGTCTTCTTACAGTTACCGGAACCCGAAAAGGTCTCTCTACTCAACGGCTCTTGCAAGCGAAGCATTGATCACGCCAAGTTCCAAGAAATTGGCGGACGGATATCCGGGTTCATCGCAGAGCTGCTTGAATTAATGCGGACTAATCAGGCGGAAAGTGTAAGGAAAAATTGAGTGTTATCTTCGCATTTGATCYCAATTTTTTTCAGTATATAATTATGCGAATCCGCCGAGTCGGAGCGGTTCACTACGACAAAGGGATTGTGTTCTCTTCATCTGTATGGAAGGAGTTCAAGTATACAATTCAGAGCATCATTTCAGAAGTGCAGTTCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTCGTAAACAGGATTATAGTTAGGGTGCATATGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAGCTTATTTCCGAAAGAACGGATAGTTTGGTCCACGGCAAGCTAACCGCGGCTTGTCACATTAAAAACCTAATATTAAATCCATGTATTTTGCAGGAACGAGAAGCCGCACTTGATGCATGGAACATCTTCATCTCGTTCATCATTCGAGAGATGAAAATGGGAATCTGGGCGATCGGTGACACGATAGTACAGATGCCATAACTCCGATCTCCCTTTTTCGCCTGTTGCTCTCCACTGTACATTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCTCTACTCAACGGCTCTT</pcr_primer_p1>
		<pcr_primer_p2>CCATACAGATGAAGAGAACACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTCTCTACTCAACGGCTCTTGCAAGCGAAGCATTGATCACGCCAAGTTCCAAGAAATTGGCGGACGGATATCCGGGTTCATCGCAGAGCTGCTTGAATTAATGCGGACTAATCAGGCGGAAAGTGTAAGGAAAAATTGAGTGTTATCTTCGCATTTGATCTCAATTTTTTTCAGTATATAATTATGCGAATCCGCCGAGTCGGAGCGGTTCACTACGACAAAGGGATTGTGTTCTCTTCATCTGTATGG</canonical_amplicon>
		<polymorphic_amplicon>TCTCTCTACTCAACGGCTCTTGCAAGCGAAGCATTGATCACGCCAAGTTCCAAGAAATTGGCGGACGGATATCCGGGTTCATCGCAGAGCTGCTTGAATTAATGCGGACTAATCAGGCGGAAAGTGTAAGGAAAAATTGAGTGTTATCTTCGCATTTGATCYCAATTTTTTTCAGTATATAATTATGCGAATCCGCCGAGTCGGAGCGGTTCACTACGACAAAGGGATTGTGTTCTCTTCATCTGTATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26197</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>530577</contig_pos>
        <strand>+</strand>
        <context>TTGATCYCAA[A/T]TTTTTTCAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGCGGAAAGTGTAAGGAAAAATTGAGTGTTATCTTCGCATTTGATCTCAA</left_flank>
        <right_flank>TTTTTTCAGTATATAATTATGCGAATCCGCCGAGTCGGAGCGGTTCACTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAAGCAACAGAATGGCTAAGCCAACGACTTATCGAGAGAAGAACCATTAAACGAAAGAAGACGATTTGTGATTCTGGGTGAGTTCGTAAAATGGAAACAAGTATAATTATTAGAATCTGTTAGTTTCAGCCAACTGCTGGGAGACCGGTTGTCAATTCTAATCTCCTCTTGGGAGAAGGCAAACGAAATGACAAATGGCGAAATTGGAGTCAGAGTTGCGTGGAACATGGTTCGGAAACATCCAACGATGTGCAAGAAAACTGTAAGAATTGGATTTAAATTAAAAAATAAATAAACCATTGTCTTCTTACAGTTACCGGAACCCGAAAAGGTCTCTCTACTCAACGGCTCTTGCAAGCGAAGCATTGATCACGCCAAGTTCCAAGAAATTGGCGGACGGATATCCGGGTTCATCGCAGAGCTGCTTGAATTAATGCGGACTAATCAGGCGGAAAGTGTAAGGAAAAATTGAGTGTTATCTTCGCATTTGATCTCAATTTTTTTCAGTATATAATTATGCGAATCCGCCGAGTCGGAGCGGTTCACTACGACAAAGGGATTGTGTTCTCTTCATCTGTATGGAAGGAGTTCAAGTATACAATTCAGAGCATCATTTCAGAAGTGCAGTTCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTCGTAAACAGGATTATAGTTAGGGTGCATATGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAGCTTATTTCCGAAAGAACGGATAGTTTGGTCCACGGCAAGCTAACCGCGGCTTGTCACATTAAAAACCTAATATTAAATCCATGTATTTTGCAGGAACGAGAAGCCGCACTTGATGCATGGAACATCTTCATCTCGTTCATCATTCGAGAGATGAAAATGGGAATCTGGGCGATCGGTGACACGATAGTACAGATGCCATAACTCCGATCTCCCTTTTTCGCCTGTTGCTCTCCACTGTACATTCATTGT</canonical>
            <polymorphic>TCAAAGCAACAGAATGGCTAAGCCAACGACTTATCGAGAGAAGAACCATTAAACGAAAGAAGACGATTTGTGATTCTGGGTGAGTTCGTAAAATGGAAACAAGTATAATTATTAGAATCTGTTAGTTTCAGCCAACTGCTGGGAGACCGGTTGTCAATTCTAATCTCCTCTTGGGAGAAGGCAAACGAAATGACAAATGGCGAAATTGGAGTCAGAGTTGCGTGGAACATGGTTCGGAAACATCCAACGATGTGCAAGAAAACTGTAAGAATTGGATTTAAATTAAAAAATAAATAAACCATTGTCTTCTTACAGTTACCGGAACCCGAAAAGGTCTCTCTACTCAACGGCTCTTGCAAGCGAAGCATTGATCACGCCAAGTTCCAAGAAATTGGCGGACGGATATCCGGGTTCATCGCAGAGCTGCTTGAATTAATGCGGACTAATCAGGCGGAAAGTGTAAGGAAAAATTGAGTGTTATCTTCGCATTTGATCTCAAWTTTTTTCAGTATATAATTATGCGAATCCGCCGAGTCGGAGCGGTTCACTACGACAAAGGGATTGTGTTCTCTTCATCTGTATGGAAGGAGTTCAAGTATACAATTCAGAGCATCATTTCAGAAGTGCAGTTCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTCGTAAACAGGATTATAGTTAGGGTGCATATGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAGCTTATTTCCGAAAGAACGGATAGTTTGGTCCACGGCAAGCTAACCGCGGCTTGTCACATTAAAAACCTAATATTAAATCCATGTATTTTGCAGGAACGAGAAGCCGCACTTGATGCATGGAACATCTTCATCTCGTTCATCATTCGAGAGATGAAAATGGGAATCTGGGCGATCGGTGACACGATAGTACAGATGCCATAACTCCGATCTCCCTTTTTCGCCTGTTGCTCTCCACTGTACATTCATTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>399 109 106 87 66 49 48 41 38 29 17 11</canonical_bands>
                <polymorphic_bands>399 109 106 87 66 49 48 46 41 38 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCTCTACTCAACGGCTCTT</pcr_primer_p1>
		<pcr_primer_p2>CCATACAGATGAAGAGAACACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTCTCTACTCAACGGCTCTTGCAAGCGAAGCATTGATCACGCCAAGTTCCAAGAAATTGGCGGACGGATATCCGGGTTCATCGCAGAGCTGCTTGAATTAATGCGGACTAATCAGGCGGAAAGTGTAAGGAAAAATTGAGTGTTATCTTCGCATTTGATCTCAATTTTTTTCAGTATATAATTATGCGAATCCGCCGAGTCGGAGCGGTTCACTACGACAAAGGGATTGTGTTCTCTTCATCTGTATGG</canonical_amplicon>
		<polymorphic_amplicon>TCTCTCTACTCAACGGCTCTTGCAAGCGAAGCATTGATCACGCCAAGTTCCAAGAAATTGGCGGACGGATATCCGGGTTCATCGCAGAGCTGCTTGAATTAATGCGGACTAATCAGGCGGAAAGTGTAAGGAAAAATTGAGTGTTATCTTCGCATTTGATCTCAAWTTTTTTCAGTATATAATTATGCGAATCCGCCGAGTCGGAGCGGTTCACTACGACAAAGGGATTGTGTTCTCTTCATCTGTATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26198</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>530751</contig_pos>
        <strand>+</strand>
        <context>CAAGACTGTC[G/T]TAAACAGGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGCAGTTCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTC</left_flank>
        <right_flank>TAAACAGGATTATAGTTAGGGTGCATATGTAATAGGTAGGATTTGGCTGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAAGGCAAACGAAATGACAAATGGCGAAATTGGAGTCAGAGTTGCGTGGAACATGGTTCGGAAACATCCAACGATGTGCAAGAAAACTGTAAGAATTGGATTTAAATTAAAAAATAAATAAACCATTGTCTTCTTACAGTTACCGGAACCCGAAAAGGTCTCTCTACTCAACGGCTCTTGCAAGCGAAGCATTGATCACGCCAAGTTCCAAGAAATTGGCGGACGGATATCCGGGTTCATCGCAGAGCTGCTTGAATTAATGCGGACTAATCAGGCGGAAAGTGTAAGGAAAAATTGAGTGTTATCTTCGCATTTGATCTCAATTTTTTTCAGTATATAATTATGCGAATCCGCCGAGTCGGAGCGGTTCACTACGACAAAGGGATTGTGTTCTCTTCATCTGTATGGAAGGAGTTCAAGTATACAATTCAGAGCATCATTTCAGAAGTGCAGTTCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTCGTAAACAGGATTATAGTTAGGGTGCATATGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAGCTTATTTCCGAAAGAACGGATAGTTTGGTCCACGGCAAGCTAACCGCGGCTTGTCACATTAAAAACCTAATATTAAATCCATGTATTTTGCAGGAACGAGAAGCCGCACTTGATGCATGGAACATCTTCATCTCGTTCATCATTCGAGAGATGAAAATGGGAATCTGGGCGATCGGTGACACGATAGTACAGATGCCATAACTCCGATCTCCCTTTTTCGCCTGTTGCTCTCCACTGTACATTCATTGTATCATTTTTCGTCATATACTTATATTTTTTGCTTATGTTCATTTTGCTTACGCTTCCATCGCTCCGTCCCTCCATCCCATTGATCCCCATATTCTACGAGTAATGTGACCCATAACCGTTTTTTTCCTTGTGTCGCCATATATTTCTTTTGCAAATATATTTCTTTTGCATAAA</canonical>
            <polymorphic>GAGAAGGCAAACGAAATGACAAATGGCGAAATTGGAGTCAGAGTTGCGTGGAACATGGTTCGGAAACATCCAACGATGTGCAAGAAAACTGTAAGAATTGGATTTAAATTAAAAAATAAATAAACCATTGTCTTCTTACAGTTACCGGAACCCGAAAAGGTCTCTCTACTCAACGGCTCTTGCAAGCGAAGCATTGATCACGCCAAGTTCCAAGAAATTGGCGGACGGATATCCGGGTTCATCGCAGAGCTGCTTGAATTAATGCGGACTAATCAGGCGGAAAGTGTAAGGAAAAATTGAGTGTTATCTTCGCATTTGATCTCAATTTTTTTCAGTATATAATTATGCGAATCCGCCGAGTCGGAGCGGTTCACTACGACAAAGGGATTGTGTTCTCTTCATCTGTATGGAAGGAGTTCAAGTATACAATTCAGAGCATCATTTCAGAAGTGCAGTTCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTCKTAAACAGGATTATAGTTAGGGTGCATATGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAGCTTATTTCCGAAAGAACGGATAGTTTGGTCCACGGCAAGCTAACCGCGGCTTGTCACATTAAAAACCTAATATTAAATCCATGTATTTTGCAGGAACGAGAAGCCGCACTTGATGCATGGAACATCTTCATCTCGTTCATCATTCGAGAGATGAAAATGGGAATCTGGGCGATCGGTGACACGATAGTACAGATGCCATAACTCCGATCTCCCTTTTTCGCCTGTTGCTCTCCACTGTACATTCATTGTATCATTTTTCGTCATATACTTATATTTTTTGCTTATGTTCATTTTGCTTACGCTTCCATCGCTCCGTCCCTCCATCCCATTGATCCCCATATTCTACGAGTAATGTGACCCATAACCGTTTTTTTCCTTGTGTCGCCATATATTTCTTTTGCAAATATATTTCTTTTGCATAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>393 371 105 62 53 16</canonical_bands>
                <polymorphic_bands>393 371 121 62 53</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAGAGCATCATTTCAGAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTCTCGTTCCTGCAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCAGAGCATCATTTCAGAAGTGCAGTTCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTCGTAAACAGGATTATAGTTAGGGTGCATATGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAGCTTATTTCCGAAAGAACGGATAGTTTGGTCCACGGCAAGCTAACCGCGGCTTGTCACATTAAAAACCTAATATTAAATCCATGTATTTTGCAGGAACGAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TTCAGAGCATCATTTCAGAAGTGCAGTTCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTCKTAAACAGGATTATAGTTAGGGTGCATATGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAGCTTATTTCCGAAAGAACGGATAGTTTGGTCCACGGCAAGCTAACCGCGGCTTGTCACATTAAAAACCTAATATTAAATCCATGTATTTTGCAGGAACGAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26199</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>530778</contig_pos>
        <strand></strand>
        <context>tagggtgcat[A/C]tgtaataggt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAGGGCCGTTTACCAAGACTGTCGTAAACAGGATTATAGTTAGGGTGCAT</left_flank>
        <right_flank>TGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAG</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAATTGGAGTCAGAGTTGCGTGGAACATGGTTCGGAAACATCCAACGATGTGCAAGAAAACTGTAAGAATTGGATTTAAATTAAAAAATAAATAAACCATTGTCTTCTTACAGTTACCGGAACCCGAAAAGGTCTCTCTACTCAACGGCTCTTGCAAGCGAAGCATTGATCACGCCAAGTTCCAAGAAATTGGCGGACGGATATCCGGGTTCATCGCAGAGCTGCTTGAATTAATGCGGACTAATCAGGCGGAAAGTGTAAGGAAAAATTGAGTGTTATCTTCGCATTTGATCTCAATTTTTTTCAGTATATAATTATGCGAATCCGCCGAGTCGGAGCGGTTCACTACGACAAAGGGATTGTGTTCTCTTCATCTGTATGGAAGGAGTTCAAGTATACAATTCAGAGCATCATTTCAGAAGTGCAGTTCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTCGTAAACAGGATTATAGTTAGGGTGCATATGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAGCTTATTTCCGAAAGAACGGATAGTTTGGTCCACGGCAAGCTAACCGCGGCTTGTCACATTAAAAACCTAATATTAAATCCATGTATTTTGCAGGAACGAGAAGCCGCACTTGATGCATGGAACATCTTCATCTCGTTCATCATTCGAGAGATGAAAATGGGAATCTGGGCGATCGGTGACACGATAGTACAGATGCCATAACTCCGATCTCCCTTTTTCGCCTGTTGCTCTCCACTGTACATTCATTGTATCATTTTTCGTCATATACTTATATTTTTTGCTTATGTTCATTTTGCTTACGCTTCCATCGCTCCGTCCCTCCATCCCATTGATCCCCATATTCTACGAGTAATGTGACCCATAACCGTTTTTTTCCTTGTGTCGCCATATATTTCTTTTGCAAATATATTTCTTTTGCATAAAAAATCTTATTCTTTCTGAGACAAAAAC</canonical>
            <polymorphic>GAAATTGGAGTCAGAGTTGCGTGGAACATGGTTCGGAAACATCCAACGATGTGCAAGAAAACTGTAAGAATTGGATTTAAATTAAAAAATAAATAAACCATTGTCTTCTTACAGTTACCGGAACCCGAAAAGGTCTCTCTACTCAACGGCTCTTGCAAGCGAAGCATTGATCACGCCAAGTTCCAAGAAATTGGCGGACGGATATCCGGGTTCATCGCAGAGCTGCTTGAATTAATGCGGACTAATCAGGCGGAAAGTGTAAGGAAAAATTGAGTGTTATCTTCGCATTTGATCTCAATTTTTTTCAGTATATAATTATGCGAATCCGCCGAGTCGGAGCGGTTCACTACGACAAAGGGATTGTGTTCTCTTCATCTGTATGGAAGGAGTTCAAGTATACAATTCAGAGCATCATTTCAGAAGTGCAGTTCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTCGTAAACAGGATTATAGTTAGGGTGCATMTGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAGCTTATTTCCGAAAGAACGGATAGTTTGGTCCACGGCAAGCTAACCGCGGCTTGTCACATTAAAAACCTAATATTAAATCCATGTATTTTGCAGGAACGAGAAGCCGCACTTGATGCATGGAACATCTTCATCTCGTTCATCATTCGAGAGATGAAAATGGGAATCTGGGCGATCGGTGACACGATAGTACAGATGCCATAACTCCGATCTCCCTTTTTCGCCTGTTGCTCTCCACTGTACATTCATTGTATCATTTTTCGTCATATACTTATATTTTTTGCTTATGTTCATTTTGCTTACGCTTCCATCGCTCCGTCCCTCCATCCCATTGATCCCCATATTCTACGAGTAATGTGACCCATAACCGTTTTTTTCCTTGTGTCGCCATATATTTCTTTTGCAAATATATTTCTTTTGCATAAAAAATCTTATTCTTTCTGAGACAAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATATG</site>
                <isoschizomers>
                    <enzyme>FauNDI</enzyme>
                    <enzyme>NdeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAGAGCATCATTTCAGAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTCTCGTTCCTGCAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCAGAGCATCATTTCAGAAGTGCAGTTCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTCGTAAACAGGATTATAGTTAGGGTGCATATGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAGCTTATTTCCGAAAGAACGGATAGTTTGGTCCACGGCAAGCTAACCGCGGCTTGTCACATTAAAAACCTAATATTAAATCCATGTATTTTGCAGGAACGAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TTCAGAGCATCATTTCAGAAGTGCAGTTCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTCGTAAACAGGATTATAGTTAGGGTGCATMTGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAGCTTATTTCCGAAAGAACGGATAGTTTGGTCCACGGCAAGCTAACCGCGGCTTGTCACATTAAAAACCTAATATTAAATCCATGTATTTTGCAGGAACGAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26200</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>530829</contig_pos>
        <strand></strand>
        <context>ttctggttag[C/T]ttatttccga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAG</left_flank>
        <right_flank>TTATTTCCGAAAGAACGGATAGTTTGGTCCACGGCAAGCTAACCGCGGCT</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCAAGAAAACTGTAAGAATTGGATTTAAATTAAAAAATAAATAAACCATTGTCTTCTTACAGTTACCGGAACCCGAAAAGGTCTCTCTACTCAACGGCTCTTGCAAGCGAAGCATTGATCACGCCAAGTTCCAAGAAATTGGCGGACGGATATCCGGGTTCATCGCAGAGCTGCTTGAATTAATGCGGACTAATCAGGCGGAAAGTGTAAGGAAAAATTGAGTGTTATCTTCGCATTTGATCTCAATTTTTTTCAGTATATAATTATGCGAATCCGCCGAGTCGGAGCGGTTCACTACGACAAAGGGATTGTGTTCTCTTCATCTGTATGGAAGGAGTTCAAGTATACAATTCAGAGCATCATTTCAGAAGTGCAGTTCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTCGTAAACAGGATTATAGTTAGGGTGCATATGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAGCTTATTTCCGAAAGAACGGATAGTTTGGTCCACGGCAAGCTAACCGCGGCTTGTCACATTAAAAACCTAATATTAAATCCATGTATTTTGCAGGAACGAGAAGCCGCACTTGATGCATGGAACATCTTCATCTCGTTCATCATTCGAGAGATGAAAATGGGAATCTGGGCGATCGGTGACACGATAGTACAGATGCCATAACTCCGATCTCCCTTTTTCGCCTGTTGCTCTCCACTGTACATTCATTGTATCATTTTTCGTCATATACTTATATTTTTTGCTTATGTTCATTTTGCTTACGCTTCCATCGCTCCGTCCCTCCATCCCATTGATCCCCATATTCTACGAGTAATGTGACCCATAACCGTTTTTTTCCTTGTGTCGCCATATATTTCTTTTGCAAATATATTTCTTTTGCATAAAAAATCTTATTCTTTCTGAGACAAAAACTTACATATCGTTTGTAATAACGGAATCTGTTGACTTTCACAGGAAGGTCGA</canonical>
            <polymorphic>TGCAAGAAAACTGTAAGAATTGGATTTAAATTAAAAAATAAATAAACCATTGTCTTCTTACAGTTACCGGAACCCGAAAAGGTCTCTCTACTCAACGGCTCTTGCAAGCGAAGCATTGATCACGCCAAGTTCCAAGAAATTGGCGGACGGATATCCGGGTTCATCGCAGAGCTGCTTGAATTAATGCGGACTAATCAGGCGGAAAGTGTAAGGAAAAATTGAGTGTTATCTTCGCATTTGATCTCAATTTTTTTCAGTATATAATTATGCGAATCCGCCGAGTCGGAGCGGTTCACTACGACAAAGGGATTGTGTTCTCTTCATCTGTATGGAAGGAGTTCAAGTATACAATTCAGAGCATCATTTCAGAAGTGCAGTTCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTCGTAAACAGGATTATAGTTAGGGTGCATATGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAGYTTATTTCCGAAAGAACGGATAGTTTGGTCCACGGCAAGCTAACCGCGGCTTGTCACATTAAAAACCTAATATTAAATCCATGTATTTTGCAGGAACGAGAAGCCGCACTTGATGCATGGAACATCTTCATCTCGTTCATCATTCGAGAGATGAAAATGGGAATCTGGGCGATCGGTGACACGATAGTACAGATGCCATAACTCCGATCTCCCTTTTTCGCCTGTTGCTCTCCACTGTACATTCATTGTATCATTTTTCGTCATATACTTATATTTTTTGCTTATGTTCATTTTGCTTACGCTTCCATCGCTCCGTCCCTCCATCCCATTGATCCCCATATTCTACGAGTAATGTGACCCATAACCGTTTTTTTCCTTGTGTCGCCATATATTTCTTTTGCAAATATATTTCTTTTGCATAAAAAATCTTATTCTTTCTGAGACAAAAACTTACATATCGTTTGTAATAACGGAATCTGTTGACTTTCACAGGAAGGTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>462 328 171 39</canonical_bands>
                <polymorphic_bands>462 367 171</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>398 232 98 73 65 54 39 31 10</canonical_bands>
                <polymorphic_bands>398 232 98 73 70 65 54 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAGAGCATCATTTCAGAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTCTCGTTCCTGCAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCAGAGCATCATTTCAGAAGTGCAGTTCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTCGTAAACAGGATTATAGTTAGGGTGCATATGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAGCTTATTTCCGAAAGAACGGATAGTTTGGTCCACGGCAAGCTAACCGCGGCTTGTCACATTAAAAACCTAATATTAAATCCATGTATTTTGCAGGAACGAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TTCAGAGCATCATTTCAGAAGTGCAGTTCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTCGTAAACAGGATTATAGTTAGGGTGCATATGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAGYTTATTTCCGAAAGAACGGATAGTTTGGTCCACGGCAAGCTAACCGCGGCTTGTCACATTAAAAACCTAATATTAAATCCATGTATTTTGCAGGAACGAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26201</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>530851</contig_pos>
        <strand></strand>
        <context>agaacggata[G/A]tttggtccac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCTAGTGACCATATAAGTTTCTGGTTAGCTTATTTCCGAAAGAACGGATA</left_flank>
        <right_flank>TTTGGTCCACGGCAAGCTAACCGCGGCTTGTCACATTAAAAACCTAATAT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTAAATTAAAAAATAAATAAACCATTGTCTTCTTACAGTTACCGGAACCCGAAAAGGTCTCTCTACTCAACGGCTCTTGCAAGCGAAGCATTGATCACGCCAAGTTCCAAGAAATTGGCGGACGGATATCCGGGTTCATCGCAGAGCTGCTTGAATTAATGCGGACTAATCAGGCGGAAAGTGTAAGGAAAAATTGAGTGTTATCTTCGCATTTGATCTCAATTTTTTTCAGTATATAATTATGCGAATCCGCCGAGTCGGAGCGGTTCACTACGACAAAGGGATTGTGTTCTCTTCATCTGTATGGAAGGAGTTCAAGTATACAATTCAGAGCATCATTTCAGAAGTGCAGTTCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTCGTAAACAGGATTATAGTTAGGGTGCATATGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAGCTTATTTCCGAAAGAACGGATAGTTTGGTCCACGGCAAGCTAACCGCGGCTTGTCACATTAAAAACCTAATATTAAATCCATGTATTTTGCAGGAACGAGAAGCCGCACTTGATGCATGGAACATCTTCATCTCGTTCATCATTCGAGAGATGAAAATGGGAATCTGGGCGATCGGTGACACGATAGTACAGATGCCATAACTCCGATCTCCCTTTTTCGCCTGTTGCTCTCCACTGTACATTCATTGTATCATTTTTCGTCATATACTTATATTTTTTGCTTATGTTCATTTTGCTTACGCTTCCATCGCTCCGTCCCTCCATCCCATTGATCCCCATATTCTACGAGTAATGTGACCCATAACCGTTTTTTTCCTTGTGTCGCCATATATTTCTTTTGCAAATATATTTCTTTTGCATAAAAAATCTTATTCTTTCTGAGACAAAAACTTACATATCGTTTGTAATAACGGAATCTGTTGACTTTCACAGGAAGGTCGAGATAGATTTGAGCACTAGACAT</canonical>
            <polymorphic>GATTTAAATTAAAAAATAAATAAACCATTGTCTTCTTACAGTTACCGGAACCCGAAAAGGTCTCTCTACTCAACGGCTCTTGCAAGCGAAGCATTGATCACGCCAAGTTCCAAGAAATTGGCGGACGGATATCCGGGTTCATCGCAGAGCTGCTTGAATTAATGCGGACTAATCAGGCGGAAAGTGTAAGGAAAAATTGAGTGTTATCTTCGCATTTGATCTCAATTTTTTTCAGTATATAATTATGCGAATCCGCCGAGTCGGAGCGGTTCACTACGACAAAGGGATTGTGTTCTCTTCATCTGTATGGAAGGAGTTCAAGTATACAATTCAGAGCATCATTTCAGAAGTGCAGTTCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTCGTAAACAGGATTATAGTTAGGGTGCATATGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAGCTTATTTCCGAAAGAACGGATARTTTGGTCCACGGCAAGCTAACCGCGGCTTGTCACATTAAAAACCTAATATTAAATCCATGTATTTTGCAGGAACGAGAAGCCGCACTTGATGCATGGAACATCTTCATCTCGTTCATCATTCGAGAGATGAAAATGGGAATCTGGGCGATCGGTGACACGATAGTACAGATGCCATAACTCCGATCTCCCTTTTTCGCCTGTTGCTCTCCACTGTACATTCATTGTATCATTTTTCGTCATATACTTATATTTTTTGCTTATGTTCATTTTGCTTACGCTTCCATCGCTCCGTCCCTCCATCCCATTGATCCCCATATTCTACGAGTAATGTGACCCATAACCGTTTTTTTCCTTGTGTCGCCATATATTTCTTTTGCAAATATATTTCTTTTGCATAAAAAATCTTATTCTTTCTGAGACAAAAACTTACATATCGTTTGTAATAACGGAATCTGTTGACTTTCACAGGAAGGTCGAGATAGATTTGAGCACTAGACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAGAGCATCATTTCAGAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTCTCGTTCCTGCAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCAGAGCATCATTTCAGAAGTGCAGTTCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTCGTAAACAGGATTATAGTTAGGGTGCATATGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAGCTTATTTCCGAAAGAACGGATAGTTTGGTCCACGGCAAGCTAACCGCGGCTTGTCACATTAAAAACCTAATATTAAATCCATGTATTTTGCAGGAACGAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TTCAGAGCATCATTTCAGAAGTGCAGTTCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTCGTAAACAGGATTATAGTTAGGGTGCATATGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAGCTTATTTCCGAAAGAACGGATARTTTGGTCCACGGCAAGCTAACCGCGGCTTGTCACATTAAAAACCTAATATTAAATCCATGTATTTTGCAGGAACGAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26202</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>530878</contig_pos>
        <strand></strand>
        <context>ctaaccgcgg[C/G]ttGTCACATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCTTATTTCCGAAAGAACGGATAGTTTGGTCCACGGCAAGCTAACCGCGG</left_flank>
        <right_flank>TTGTCACATTAAAAACCTAATATTAAATCCATGTATTTTGCAGGAACGAG</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTCTTCTTACAGTTACCGGAACCCGAAAAGGTCTCTCTACTCAACGGCTCTTGCAAGCGAAGCATTGATCACGCCAAGTTCCAAGAAATTGGCGGACGGATATCCGGGTTCATCGCAGAGCTGCTTGAATTAATGCGGACTAATCAGGCGGAAAGTGTAAGGAAAAATTGAGTGTTATCTTCGCATTTGATCTCAATTTTTTTCAGTATATAATTATGCGAATCCGCCGAGTCGGAGCGGTTCACTACGACAAAGGGATTGTGTTCTCTTCATCTGTATGGAAGGAGTTCAAGTATACAATTCAGAGCATCATTTCAGAAGTGCAGTTCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTCGTAAACAGGATTATAGTTAGGGTGCATATGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAGCTTATTTCCGAAAGAACGGATAGTTTGGTCCACGGCAAGCTAACCGCGGCTTGTCACATTAAAAACCTAATATTAAATCCATGTATTTTGCAGGAACGAGAAGCCGCACTTGATGCATGGAACATCTTCATCTCGTTCATCATTCGAGAGATGAAAATGGGAATCTGGGCGATCGGTGACACGATAGTACAGATGCCATAACTCCGATCTCCCTTTTTCGCCTGTTGCTCTCCACTGTACATTCATTGTATCATTTTTCGTCATATACTTATATTTTTTGCTTATGTTCATTTTGCTTACGCTTCCATCGCTCCGTCCCTCCATCCCATTGATCCCCATATTCTACGAGTAATGTGACCCATAACCGTTTTTTTCCTTGTGTCGCCATATATTTCTTTTGCAAATATATTTCTTTTGCATAAAAAATCTTATTCTTTCTGAGACAAAAACTTACATATCGTTTGTAATAACGGAATCTGTTGACTTTCACAGGAAGGTCGAGATAGATTTGAGCACTAGACATGGAAGACACAGTAACGTCATCCTGAAA</canonical>
            <polymorphic>TTGTCTTCTTACAGTTACCGGAACCCGAAAAGGTCTCTCTACTCAACGGCTCTTGCAAGCGAAGCATTGATCACGCCAAGTTCCAAGAAATTGGCGGACGGATATCCGGGTTCATCGCAGAGCTGCTTGAATTAATGCGGACTAATCAGGCGGAAAGTGTAAGGAAAAATTGAGTGTTATCTTCGCATTTGATCTCAATTTTTTTCAGTATATAATTATGCGAATCCGCCGAGTCGGAGCGGTTCACTACGACAAAGGGATTGTGTTCTCTTCATCTGTATGGAAGGAGTTCAAGTATACAATTCAGAGCATCATTTCAGAAGTGCAGTTCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTCGTAAACAGGATTATAGTTAGGGTGCATATGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAGCTTATTTCCGAAAGAACGGATAGTTTGGTCCACGGCAAGCTAACCGCGGSTTGTCACATTAAAAACCTAATATTAAATCCATGTATTTTGCAGGAACGAGAAGCCGCACTTGATGCATGGAACATCTTCATCTCGTTCATCATTCGAGAGATGAAAATGGGAATCTGGGCGATCGGTGACACGATAGTACAGATGCCATAACTCCGATCTCCCTTTTTCGCCTGTTGCTCTCCACTGTACATTCATTGTATCATTTTTCGTCATATACTTATATTTTTTGCTTATGTTCATTTTGCTTACGCTTCCATCGCTCCGTCCCTCCATCCCATTGATCCCCATATTCTACGAGTAATGTGACCCATAACCGTTTTTTTCCTTGTGTCGCCATATATTTCTTTTGCAAATATATTTCTTTTGCATAAAAAATCTTATTCTTTCTGAGACAAAAACTTACATATCGTTTGTAATAACGGAATCTGTTGACTTTCACAGGAAGGTCGAGATAGATTTGAGCACTAGACATGGAAGACACAGTAACGTCATCCTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>444 374 125 57</canonical_bands>
                <polymorphic_bands>444 431 125</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>447 232 73 65 54 49 39 31 10</canonical_bands>
                <polymorphic_bands>447 232 73 65 64 49 39 31</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>499 444 57</canonical_bands>
                <polymorphic_bands>556 444</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAGAGCATCATTTCAGAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTCTCGTTCCTGCAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCAGAGCATCATTTCAGAAGTGCAGTTCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTCGTAAACAGGATTATAGTTAGGGTGCATATGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAGCTTATTTCCGAAAGAACGGATAGTTTGGTCCACGGCAAGCTAACCGCGGCTTGTCACATTAAAAACCTAATATTAAATCCATGTATTTTGCAGGAACGAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TTCAGAGCATCATTTCAGAAGTGCAGTTCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTCGTAAACAGGATTATAGTTAGGGTGCATATGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAGCTTATTTCCGAAAGAACGGATAGTTTGGTCCACGGCAAGCTAACCGCGGSTTGTCACATTAAAAACCTAATATTAAATCCATGTATTTTGCAGGAACGAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26203</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>530911</contig_pos>
        <strand>+</strand>
        <context>TTAAATCCAT[G/T]TATTTTGCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGGCAAGCTAACCGCGGCTTGTCACATTAAAAACCTAATATTAAATCCAT</left_flank>
        <right_flank>TATTTTGCAGGAACGAGAAGCCGCACTTGATGCATGGAACATCTTCATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCTCTACTCAACGGCTCTTGCAAGCGAAGCATTGATCACGCCAAGTTCCAAGAAATTGGCGGACGGATATCCGGGTTCATCGCAGAGCTGCTTGAATTAATGCGGACTAATCAGGCGGAAAGTGTAAGGAAAAATTGAGTGTTATCTTCGCATTTGATCTCAATTTTTTTCAGTATATAATTATGCGAATCCGCCGAGTCGGAGCGGTTCACTACGACAAAGGGATTGTGTTCTCTTCATCTGTATGGAAGGAGTTCAAGTATACAATTCAGAGCATCATTTCAGAAGTGCAGTTCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTCGTAAACAGGATTATAGTTAGGGTGCATATGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAGCTTATTTCCGAAAGAACGGATAGTTTGGTCCACGGCAAGCTAACCGCGGCTTGTCACATTAAAAACCTAATATTAAATCCATGTATTTTGCAGGAACGAGAAGCCGCACTTGATGCATGGAACATCTTCATCTCGTTCATCATTCGAGAGATGAAAATGGGAATCTGGGCGATCGGTGACACGATAGTACAGATGCCATAACTCCGATCTCCCTTTTTCGCCTGTTGCTCTCCACTGTACATTCATTGTATCATTTTTCGTCATATACTTATATTTTTTGCTTATGTTCATTTTGCTTACGCTTCCATCGCTCCGTCCCTCCATCCCATTGATCCCCATATTCTACGAGTAATGTGACCCATAACCGTTTTTTTCCTTGTGTCGCCATATATTTCTTTTGCAAATATATTTCTTTTGCATAAAAAATCTTATTCTTTCTGAGACAAAAACTTACATATCGTTTGTAATAACGGAATCTGTTGACTTTCACAGGAAGGTCGAGATAGATTTGAGCACTAGACATGGAAGACACAGTAACGTCATCCTGAAATAATAATAGTTCGAAGTTGGTTATTCAGGAAAA</canonical>
            <polymorphic>TCTCTCTACTCAACGGCTCTTGCAAGCGAAGCATTGATCACGCCAAGTTCCAAGAAATTGGCGGACGGATATCCGGGTTCATCGCAGAGCTGCTTGAATTAATGCGGACTAATCAGGCGGAAAGTGTAAGGAAAAATTGAGTGTTATCTTCGCATTTGATCTCAATTTTTTTCAGTATATAATTATGCGAATCCGCCGAGTCGGAGCGGTTCACTACGACAAAGGGATTGTGTTCTCTTCATCTGTATGGAAGGAGTTCAAGTATACAATTCAGAGCATCATTTCAGAAGTGCAGTTCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTCGTAAACAGGATTATAGTTAGGGTGCATATGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAGCTTATTTCCGAAAGAACGGATAGTTTGGTCCACGGCAAGCTAACCGCGGCTTGTCACATTAAAAACCTAATATTAAATCCATKTATTTTGCAGGAACGAGAAGCCGCACTTGATGCATGGAACATCTTCATCTCGTTCATCATTCGAGAGATGAAAATGGGAATCTGGGCGATCGGTGACACGATAGTACAGATGCCATAACTCCGATCTCCCTTTTTCGCCTGTTGCTCTCCACTGTACATTCATTGTATCATTTTTCGTCATATACTTATATTTTTTGCTTATGTTCATTTTGCTTACGCTTCCATCGCTCCGTCCCTCCATCCCATTGATCCCCATATTCTACGAGTAATGTGACCCATAACCGTTTTTTTCCTTGTGTCGCCATATATTTCTTTTGCAAATATATTTCTTTTGCATAAAAAATCTTATTCTTTCTGAGACAAAAACTTACATATCGTTTGTAATAACGGAATCTGTTGACTTTCACAGGAAGGTCGAGATAGATTTGAGCACTAGACATGGAAGACACAGTAACGTCATCCTGAAATAATAATAGTTCGAAGTTGGTTATTCAGGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>497 405 62 36</canonical_bands>
                <polymorphic_bands>533 405 62</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCGTCACCTCAGGTTAGT</pcr_primer_p1>
		<pcr_primer_p2>TGATGAACGAGATGAAGATGT</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>TCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTCGTAAACAGGATTATAGTTAGGGTGCATATGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAGCTTATTTCCGAAAGAACGGATAGTTTGGTCCACGGCAAGCTAACCGCGGCTTGTCACATTAAAAACCTAATATTAAATCCATGTATTTTGCAGGAACGAGAAGCCGCACTTGATGCATGGAACATCTTCATCTCGTTCATCA</canonical_amplicon>
		<polymorphic_amplicon>TCTCGTCACCTCAGGTTAGTGAGGGCCGTTTACCAAGACTGTCGTAAACAGGATTATAGTTAGGGTGCATATGTAATAGGTAGGATTTGGCTGTCTAGTGACCATATAAGTTTCTGGTTAGCTTATTTCCGAAAGAACGGATAGTTTGGTCCACGGCAAGCTAACCGCGGCTTGTCACATTAAAAACCTAATATTAAATCCATKTATTTTGCAGGAACGAGAAGCCGCACTTGATGCATGGAACATCTTCATCTCGTTCATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26204</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>534463</contig_pos>
        <strand></strand>
        <context>attagagggc[T/C]yttctattac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCTTTGACAGGAACCGAGAAAAATTAGATCAATGTTAAAAATTAGAGGGC</left_flank>
        <right_flank>TTTCTATTACAGGTTTTACGGTAATTTAAAATCTCAGTTCAGGTAAGCTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTATAGATAAGCGAAAAAGAGTTAAACAAGTTTGACATCTGAAAAGGTTTTGAGAGGTTCAAGTTCAAAAACGAAAATATCAGTTATCAATGAAATTTGAGATTCACCATATGTTCTAATAAAAGCCCACCCGAACCGTCAACTTTGAGCTCAATTGACTTGATTTCTGTAAAAGATATCAAAAATTTCTCAACTGATAAAATGTTTGTCATTCTTATAATAAATTAATGAAGTTGTGTCTCTTTCTCTGTGGATTTGTCCGCAGATTTTTTGAAAAGCTTGAAAATTAAATATACCGTGACCTTTTAAAAAGACAGAGGAGCGAAGCGACGATAAAGCAAAAAATAGATCAAATCGCGCCAAAGGCGCACCAGTCAGCTGTTTGAAGCGCCGGAGACGCGGCAAACAGGCTATGATAAACATTTCATCAGTCGACAACGTTTCGATATCTTTGACAGGAACCGAGAAAAATTAGATCAATGTTAAAAATTAGAGGGCTTTTCTATTACAGGTTTTACGGTAATTTAAAATCTCAGTTCAGGTAAGCTTTTATTGAAGGGAATACGGTAAACTTGATTGAGGACCTTTCGGAAGTTTTTCGATCATGCAAGTAATTACTTCTTCAGATACCAAATTCTTCATATTTTCCTATCATACCTGTCCGATTCTTTCATTGGATCCAACTCGATCGTAATCCGAAACGGTGACGTGGAGATGGACTCTCTGAAAAATTCAAATATTAGCCCCATACATTTGGCTCTATTTTACCATCATTTTCTCAGGAGTCACATCGAAACTGAACGATTCGTTATAGTATGGATTCAACGTCTTCATTTTAATCGTAGTCTTTTTCTTTTCCAAACGCTTCGTGCCCATCATCAAATAGATCTTCACATACGGATCTGACAATCCCAAGACGTCCATCTTCTTTAGATTCTTGCACTCCATAACCACGACCGATAGCTTGTTCTTGTTCGGAACATAACGAAGAGCTAGACA</canonical>
            <polymorphic>ATTATAGATAAGCGAAAAAGAGTTAAACAAGTTTGACATCTGAAAAGGTTTTGAGAGGTTCAAGTTCAAAAACGAAAATATCAGTTATCAATGAAATTTGAGATTCACCATATGTTCTAATAAAAGCCCACCCGAACCGTCAACTTTGAGCTCAATTGACTTGATTTCTGTAAAAGATATCAAAAATTTCTCAACTGATAAAATGTTTGTCATTCTTATAATAAATTAATGAAGTTGTGTCTCTTTCTCTGTGGATTTGTCCGCAGATTTTTTGAAAAGCTTGAAAATTAAATATACCGTGACCTTTTAAAAAGACAGAGGAGCGAAGCGACGATAAAGCAAAAAATAGATCAAATCGCGCCAAAGGCGCACCAGTCAGCTGTTTGAAGCGCCGGAGACGCGGCAAACAGGCTATGATAAACATTTCATCAGTCGACAACGTTTCGATATCTTTGACAGGAACCGAGAAAAATTAGATCAATGTTAAAAATTAGAGGGCYTTTCTATTACAGGTTTTACGGTAATTTAAAATCTCAGTTCAGGTAAGCTTTTATTGAAGGGAATACGGTAAACTTGATTGAGGACCTTTCGGAAGTTTTTCGATCATGCAAGTAATTACTTCTTCAGATACCAAATTCTTCATATTTTCCTATCATACCTGTCCGATTCTTTCATTGGATCCAACTCGATCGTAATCCGAAACGGTGACGTGGAGATGGACTCTCTGAAAAATTCAAATATTAGCCCCATACATTTGGCTCTATTTTACCATCATTTTCTCAGGAGTCACATCGAAACTGAACGATTCGTTATAGTATGGATTCAACGTCTTCATTTTAATCGTAGTCTTTTTCTTTTCCAAACGCTTCGTGCCCATCATCAAATAGATCTTCACATACGGATCTGACAATCCCAAGACGTCCATCTTCTTTAGATTCTTGCACTCCATAACCACGACCGATAGCTTGTTCTTGTTCGGAACATAACGAAGAGCTAGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>206 197 129 126 100 87 49 32 29 24 14 7</canonical_bands>
                <polymorphic_bands>206 197 136 129 126 100 32 29 24 14 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGAAATTTGAGATTCACCATA</pcr_primer_p1>
		<pcr_primer_p2>ATAAAAGCTTACCTGAACTGAGA</pcr_primer_p2>
		<pcr_amplicon_size>465</pcr_amplicon_size>
		<canonical_amplicon>AATGAAATTTGAGATTCACCATATGTTCTAATAAAAGCCCACCCGAACCGTCAACTTTGAGCTCAATTGACTTGATTTCTGTAAAAGATATCAAAAATTTCTCAACTGATAAAATGTTTGTCATTCTTATAATAAATTAATGAAGTTGTGTCTCTTTCTCTGTGGATTTGTCCGCAGATTTTTTGAAAAGCTTGAAAATTAAATATACCGTGACCTTTTAAAAAGACAGAGGAGCGAAGCGACGATAAAGCAAAAAATAGATCAAATCGCGCCAAAGGCGCACCAGTCAGCTGTTTGAAGCGCCGGAGACGCGGCAAACAGGCTATGATAAACATTTCATCAGTCGACAACGTTTCGATATCTTTGACAGGAACCGAGAAAAATTAGATCAATGTTAAAAATTAGAGGGCTTTTCTATTACAGGTTTTACGGTAATTTAAAATCTCAGTTCAGGTAAGCTTTTAT</canonical_amplicon>
		<polymorphic_amplicon>AATGAAATTTGAGATTCACCATATGTTCTAATAAAAGCCCACCCGAACCGTCAACTTTGAGCTCAATTGACTTGATTTCTGTAAAAGATATCAAAAATTTCTCAACTGATAAAATGTTTGTCATTCTTATAATAAATTAATGAAGTTGTGTCTCTTTCTCTGTGGATTTGTCCGCAGATTTTTTGAAAAGCTTGAAAATTAAATATACCGTGACCTTTTAAAAAGACAGAGGAGCGAAGCGACGATAAAGCAAAAAATAGATCAAATCGCGCCAAAGGCGCACCAGTCAGCTGTTTGAAGCGCCGGAGACGCGGCAAACAGGCTATGATAAACATTTCATCAGTCGACAACGTTTCGATATCTTTGACAGGAACCGAGAAAAATTAGATCAATGTTAAAAATTAGAGGGCYTTTCTATTACAGGTTTTACGGTAATTTAAAATCTCAGTTCAGGTAAGCTTTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26205</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>534464</contig_pos>
        <strand></strand>
        <context>ttagagggcy[T/C]ttctattaca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTTTGACAGGAACCGAGAAAAATTAGATCAATGTTAAAAATTAGAGGGCT</left_flank>
        <right_flank>TTCTATTACAGGTTTTACGGTAATTTAAAATCTCAGTTCAGGTAAGCTTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATAGATAAGCGAAAAAGAGTTAAACAAGTTTGACATCTGAAAAGGTTTTGAGAGGTTCAAGTTCAAAAACGAAAATATCAGTTATCAATGAAATTTGAGATTCACCATATGTTCTAATAAAAGCCCACCCGAACCGTCAACTTTGAGCTCAATTGACTTGATTTCTGTAAAAGATATCAAAAATTTCTCAACTGATAAAATGTTTGTCATTCTTATAATAAATTAATGAAGTTGTGTCTCTTTCTCTGTGGATTTGTCCGCAGATTTTTTGAAAAGCTTGAAAATTAAATATACCGTGACCTTTTAAAAAGACAGAGGAGCGAAGCGACGATAAAGCAAAAAATAGATCAAATCGCGCCAAAGGCGCACCAGTCAGCTGTTTGAAGCGCCGGAGACGCGGCAAACAGGCTATGATAAACATTTCATCAGTCGACAACGTTTCGATATCTTTGACAGGAACCGAGAAAAATTAGATCAATGTTAAAAATTAGAGGGCTTTTCTATTACAGGTTTTACGGTAATTTAAAATCTCAGTTCAGGTAAGCTTTTATTGAAGGGAATACGGTAAACTTGATTGAGGACCTTTCGGAAGTTTTTCGATCATGCAAGTAATTACTTCTTCAGATACCAAATTCTTCATATTTTCCTATCATACCTGTCCGATTCTTTCATTGGATCCAACTCGATCGTAATCCGAAACGGTGACGTGGAGATGGACTCTCTGAAAAATTCAAATATTAGCCCCATACATTTGGCTCTATTTTACCATCATTTTCTCAGGAGTCACATCGAAACTGAACGATTCGTTATAGTATGGATTCAACGTCTTCATTTTAATCGTAGTCTTTTTCTTTTCCAAACGCTTCGTGCCCATCATCAAATAGATCTTCACATACGGATCTGACAATCCCAAGACGTCCATCTTCTTTAGATTCTTGCACTCCATAACCACGACCGATAGCTTGTTCTTGTTCGGAACATAACGAAGAGCTAGACAT</canonical>
            <polymorphic>TTATAGATAAGCGAAAAAGAGTTAAACAAGTTTGACATCTGAAAAGGTTTTGAGAGGTTCAAGTTCAAAAACGAAAATATCAGTTATCAATGAAATTTGAGATTCACCATATGTTCTAATAAAAGCCCACCCGAACCGTCAACTTTGAGCTCAATTGACTTGATTTCTGTAAAAGATATCAAAAATTTCTCAACTGATAAAATGTTTGTCATTCTTATAATAAATTAATGAAGTTGTGTCTCTTTCTCTGTGGATTTGTCCGCAGATTTTTTGAAAAGCTTGAAAATTAAATATACCGTGACCTTTTAAAAAGACAGAGGAGCGAAGCGACGATAAAGCAAAAAATAGATCAAATCGCGCCAAAGGCGCACCAGTCAGCTGTTTGAAGCGCCGGAGACGCGGCAAACAGGCTATGATAAACATTTCATCAGTCGACAACGTTTCGATATCTTTGACAGGAACCGAGAAAAATTAGATCAATGTTAAAAATTAGAGGGCTYTTCTATTACAGGTTTTACGGTAATTTAAAATCTCAGTTCAGGTAAGCTTTTATTGAAGGGAATACGGTAAACTTGATTGAGGACCTTTCGGAAGTTTTTCGATCATGCAAGTAATTACTTCTTCAGATACCAAATTCTTCATATTTTCCTATCATACCTGTCCGATTCTTTCATTGGATCCAACTCGATCGTAATCCGAAACGGTGACGTGGAGATGGACTCTCTGAAAAATTCAAATATTAGCCCCATACATTTGGCTCTATTTTACCATCATTTTCTCAGGAGTCACATCGAAACTGAACGATTCGTTATAGTATGGATTCAACGTCTTCATTTTAATCGTAGTCTTTTTCTTTTCCAAACGCTTCGTGCCCATCATCAAATAGATCTTCACATACGGATCTGACAATCCCAAGACGTCCATCTTCTTTAGATTCTTGCACTCCATAACCACGACCGATAGCTTGTTCTTGTTCGGAACATAACGAAGAGCTAGACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAAATTTGAGATTCACCATA</pcr_primer_p1>
		<pcr_primer_p2>CAATAAAAGCTTACCTGAACTGA</pcr_primer_p2>
		<pcr_amplicon_size>467</pcr_amplicon_size>
		<canonical_amplicon>AATGAAATTTGAGATTCACCATATGTTCTAATAAAAGCCCACCCGAACCGTCAACTTTGAGCTCAATTGACTTGATTTCTGTAAAAGATATCAAAAATTTCTCAACTGATAAAATGTTTGTCATTCTTATAATAAATTAATGAAGTTGTGTCTCTTTCTCTGTGGATTTGTCCGCAGATTTTTTGAAAAGCTTGAAAATTAAATATACCGTGACCTTTTAAAAAGACAGAGGAGCGAAGCGACGATAAAGCAAAAAATAGATCAAATCGCGCCAAAGGCGCACCAGTCAGCTGTTTGAAGCGCCGGAGACGCGGCAAACAGGCTATGATAAACATTTCATCAGTCGACAACGTTTCGATATCTTTGACAGGAACCGAGAAAAATTAGATCAATGTTAAAAATTAGAGGGCTTTTCTATTACAGGTTTTACGGTAATTTAAAATCTCAGTTCAGGTAAGCTTTTATTG</canonical_amplicon>
		<polymorphic_amplicon>AATGAAATTTGAGATTCACCATATGTTCTAATAAAAGCCCACCCGAACCGTCAACTTTGAGCTCAATTGACTTGATTTCTGTAAAAGATATCAAAAATTTCTCAACTGATAAAATGTTTGTCATTCTTATAATAAATTAATGAAGTTGTGTCTCTTTCTCTGTGGATTTGTCCGCAGATTTTTTGAAAAGCTTGAAAATTAAATATACCGTGACCTTTTAAAAAGACAGAGGAGCGAAGCGACGATAAAGCAAAAAATAGATCAAATCGCGCCAAAGGCGCACCAGTCAGCTGTTTGAAGCGCCGGAGACGCGGCAAACAGGCTATGATAAACATTTCATCAGTCGACAACGTTTCGATATCTTTGACAGGAACCGAGAAAAATTAGATCAATGTTAAAAATTAGAGGGCTYTTCTATTACAGGTTTTACGGTAATTTAAAATCTCAGTTCAGGTAAGCTTTTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26206</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>537647</contig_pos>
        <strand></strand>
        <context>ttatgatgaa[C/A]atwttatcag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTGTGAAAGATATCAAAAAGTAGTCAATAGGTTTTTGATATTATGATGAA</left_flank>
        <right_flank>ATATTATCAGTTGAACACTTTTTGATATCTTTCACAGAAACCGAAACAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTTTGCAAGCGTTGGGTTTATTGGAAAATGAATTTTTTTCCAAAAATTTCAAGTTGGGCACCGTAAACACACTAAAAGATGCCCCCCCCCCTCCCCAAATAGTCCAGTTTAGGCAATATATCACATTTCCTGTAAAAGATAACATAAAGTTGTCAACTGAAAAATCTTTTTGATGTTACCTTGAACATTTTGTCAGTTGACTATTTTTGATCCATTTTACAGGAACCGAGATAAGTAGGCTCAAAAATGAAATTCCGGTGGTCATTCTATTAGAGTGGTTACGGATTTACATGTATTTCTTGGAAGAAAAAGATTTGTGGAGTTTGTAAAACTTCAAGTTTCAGAATTTATGAAATTCGCAAACTCTCTGTATTTGCTTAAATACCGTAACCACTCTAATAGAAGATCACTCTATGCTTGCACTTCGATCTAATTTATCCCACTTCTTGTGAAAGATATCAAAAAGTAGTCAATAGGTTTTTGATATTATGATGAACATATTATCAGTTGAACACTTTTTGATATCTTTCACAGAAACCGAAACAATTGAGTTCAAAATTAGAATTTACGGGTGGGGCATTCTAATACAGTGTTTGCGGTGGTTAGATTTGCTTAATCGTGACAAATAAGCGATTTCTTCAATTTTTGAATTACCGAAAATCTGAATACTATGAATTTTTCACACAAAATACATTGTTACATAACGAATTGACTTAAATACATCACAGGATAACCAGATGAACATAACGAGAAAAAACCAAAAAACGAGACGGAAATGAAAAAAAATTGAATGTAGCGTAGCAAAAAATATGTTGATGTGAAGAATGTGATACACATATCATAGGAAATAACGGGGAAAACATAACTACCGAACCCGAGAGACTTGTAAGCAGGAGGCCCTACTCGTATTTCTCTGAAATTTCTAATGAGGAGACATGATGATGAGAGGGGAATAGAGGGGAGGAAAGTAAGAAGTCGTTGGACATTTTCATTAGAA</canonical>
            <polymorphic>ACTTTTTGCAAGCGTTGGGTTTATTGGAAAATGAATTTTTTTCCAAAAATTTCAAGTTGGGCACCGTAAACACACTAAAAGATGCCCCCCCCCCTCCCCAAATAGTCCAGTTTAGGCAATATATCACATTTCCTGTAAAAGATAACATAAAGTTGTCAACTGAAAAATCTTTTTGATGTTACCTTGAACATTTTGTCAGTTGACTATTTTTGATCCATTTTACAGGAACCGAGATAAGTAGGCTCAAAAATGAAATTCCGGTGGTCATTCTATTAGAGTGGTTACGGATTTACATGTATTTCTTGGAAGAAAAAGATTTGTGGAGTTTGTAAAACTTCAAGTTTCAGAATTTATGAAATTCGCAAACTCTCTGTATTTGCTTAAATACCGTAACCACTCTAATAGAAGATCACTCTATGCTTGCACTTCGATCTAATTTATCCCACTTCTTGTGAAAGATATCAAAAAGTAGTCAATAGGTTTTTGATATTATGATGAAMATATTATCAGTTGAACACTTTTTGATATCTTTCACAGAAACCGAAACAATTGAGTTCAAAATTAGAATTTACGGGTGGGGCATTCTAATACAGTGTTTGCGGTGGTTAGATTTGCTTAATCGTGACAAATAAGCGATTTCTTCAATTTTTGAATTACCGAAAATCTGAATACTATGAATTTTTCACACAAAATACATTGTTACATAACGAATTGACTTAAATACATCACAGGATAACCAGATGAACATAACGAGAAAAAACCAAAAAACGAGACGGAAATGAAAAAAAATTGAATGTAGCGTAGCAAAAAATATGTTGATGTGAAGAATGTGATACACATATCATAGGAAATAACGGGGAAAACATAACTACCGAACCCGAGAGACTTGTAAGCAGGAGGCCCTACTCGTATTTCTCTGAAATTTCTAATGAGGAGACATGATGATGAGAGGGGAATAGAGGGGAGGAAAGTAAGAAGTCGTTGGACATTTTCATTAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCGCAAACTCTCTGTATTT</pcr_primer_p1>
		<pcr_primer_p2>TCACGATTAAGCAAATCTAACC</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>AATTCGCAAACTCTCTGTATTTGCTTAAATACCGTAACCACTCTAATAGAAGATCACTCTATGCTTGCACTTCGATCTAATTTATCCCACTTCTTGTGAAAGATATCAAAAAGTAGTCAATAGGTTTTTGATATTATGATGAACATATTATCAGTTGAACACTTTTTGATATCTTTCACAGAAACCGAAACAATTGAGTTCAAAATTAGAATTTACGGGTGGGGCATTCTAATACAGTGTTTGCGGTGGTTAGATTTGCTTAATCGTGA</canonical_amplicon>
		<polymorphic_amplicon>AATTCGCAAACTCTCTGTATTTGCTTAAATACCGTAACCACTCTAATAGAAGATCACTCTATGCTTGCACTTCGATCTAATTTATCCCACTTCTTGTGAAAGATATCAAAAAGTAGTCAATAGGTTTTTGATATTATGATGAAMATATTATCAGTTGAACACTTTTTGATATCTTTCACAGAAACCGAAACAATTGAGTTCAAAATTAGAATTTACGGGTGGGGCATTCTAATACAGTGTTTGCGGTGGTTAGATTTGCTTAATCGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26207</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>537650</contig_pos>
        <strand></strand>
        <context>tgatgaamat[A/T]ttatcagttg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAAAGATATCAAAAAGTAGTCAATAGGTTTTTGATATTATGATGAACAT</left_flank>
        <right_flank>TTATCAGTTGAACACTTTTTGATATCTTTCACAGAAACCGAAACAATTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGCAAGCGTTGGGTTTATTGGAAAATGAATTTTTTTCCAAAAATTTCAAGTTGGGCACCGTAAACACACTAAAAGATGCCCCCCCCCCTCCCCAAATAGTCCAGTTTAGGCAATATATCACATTTCCTGTAAAAGATAACATAAAGTTGTCAACTGAAAAATCTTTTTGATGTTACCTTGAACATTTTGTCAGTTGACTATTTTTGATCCATTTTACAGGAACCGAGATAAGTAGGCTCAAAAATGAAATTCCGGTGGTCATTCTATTAGAGTGGTTACGGATTTACATGTATTTCTTGGAAGAAAAAGATTTGTGGAGTTTGTAAAACTTCAAGTTTCAGAATTTATGAAATTCGCAAACTCTCTGTATTTGCTTAAATACCGTAACCACTCTAATAGAAGATCACTCTATGCTTGCACTTCGATCTAATTTATCCCACTTCTTGTGAAAGATATCAAAAAGTAGTCAATAGGTTTTTGATATTATGATGAACATATTATCAGTTGAACACTTTTTGATATCTTTCACAGAAACCGAAACAATTGAGTTCAAAATTAGAATTTACGGGTGGGGCATTCTAATACAGTGTTTGCGGTGGTTAGATTTGCTTAATCGTGACAAATAAGCGATTTCTTCAATTTTTGAATTACCGAAAATCTGAATACTATGAATTTTTCACACAAAATACATTGTTACATAACGAATTGACTTAAATACATCACAGGATAACCAGATGAACATAACGAGAAAAAACCAAAAAACGAGACGGAAATGAAAAAAAATTGAATGTAGCGTAGCAAAAAATATGTTGATGTGAAGAATGTGATACACATATCATAGGAAATAACGGGGAAAACATAACTACCGAACCCGAGAGACTTGTAAGCAGGAGGCCCTACTCGTATTTCTCTGAAATTTCTAATGAGGAGACATGATGATGAGAGGGGAATAGAGGGGAGGAAAGTAAGAAGTCGTTGGACATTTTCATTAGAAATT</canonical>
            <polymorphic>TTTTGCAAGCGTTGGGTTTATTGGAAAATGAATTTTTTTCCAAAAATTTCAAGTTGGGCACCGTAAACACACTAAAAGATGCCCCCCCCCCTCCCCAAATAGTCCAGTTTAGGCAATATATCACATTTCCTGTAAAAGATAACATAAAGTTGTCAACTGAAAAATCTTTTTGATGTTACCTTGAACATTTTGTCAGTTGACTATTTTTGATCCATTTTACAGGAACCGAGATAAGTAGGCTCAAAAATGAAATTCCGGTGGTCATTCTATTAGAGTGGTTACGGATTTACATGTATTTCTTGGAAGAAAAAGATTTGTGGAGTTTGTAAAACTTCAAGTTTCAGAATTTATGAAATTCGCAAACTCTCTGTATTTGCTTAAATACCGTAACCACTCTAATAGAAGATCACTCTATGCTTGCACTTCGATCTAATTTATCCCACTTCTTGTGAAAGATATCAAAAAGTAGTCAATAGGTTTTTGATATTATGATGAACATWTTATCAGTTGAACACTTTTTGATATCTTTCACAGAAACCGAAACAATTGAGTTCAAAATTAGAATTTACGGGTGGGGCATTCTAATACAGTGTTTGCGGTGGTTAGATTTGCTTAATCGTGACAAATAAGCGATTTCTTCAATTTTTGAATTACCGAAAATCTGAATACTATGAATTTTTCACACAAAATACATTGTTACATAACGAATTGACTTAAATACATCACAGGATAACCAGATGAACATAACGAGAAAAAACCAAAAAACGAGACGGAAATGAAAAAAAATTGAATGTAGCGTAGCAAAAAATATGTTGATGTGAAGAATGTGATACACATATCATAGGAAATAACGGGGAAAACATAACTACCGAACCCGAGAGACTTGTAAGCAGGAGGCCCTACTCGTATTTCTCTGAAATTTCTAATGAGGAGACATGATGATGAGAGGGGAATAGAGGGGAGGAAAGTAAGAAGTCGTTGGACATTTTCATTAGAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCGCAAACTCTCTGTATTT</pcr_primer_p1>
		<pcr_primer_p2>TCACGATTAAGCAAATCTAACC</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>AATTCGCAAACTCTCTGTATTTGCTTAAATACCGTAACCACTCTAATAGAAGATCACTCTATGCTTGCACTTCGATCTAATTTATCCCACTTCTTGTGAAAGATATCAAAAAGTAGTCAATAGGTTTTTGATATTATGATGAACATATTATCAGTTGAACACTTTTTGATATCTTTCACAGAAACCGAAACAATTGAGTTCAAAATTAGAATTTACGGGTGGGGCATTCTAATACAGTGTTTGCGGTGGTTAGATTTGCTTAATCGTGA</canonical_amplicon>
		<polymorphic_amplicon>AATTCGCAAACTCTCTGTATTTGCTTAAATACCGTAACCACTCTAATAGAAGATCACTCTATGCTTGCACTTCGATCTAATTTATCCCACTTCTTGTGAAAGATATCAAAAAGTAGTCAATAGGTTTTTGATATTATGATGAACATWTTATCAGTTGAACACTTTTTGATATCTTTCACAGAAACCGAAACAATTGAGTTCAAAATTAGAATTTACGGGTGGGGCATTCTAATACAGTGTTTGCGGTGGTTAGATTTGCTTAATCGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26208</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>537664</contig_pos>
        <strand></strand>
        <context>tcagttgaac[A/C]ctttttgata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGTAGTCAATAGGTTTTTGATATTATGATGAACATATTATCAGTTGAAC</left_flank>
        <right_flank>CTTTTTGATATCTTTCACAGAAACCGAAACAATTGAGTTCAAAATTAGAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTTATTGGAAAATGAATTTTTTTCCAAAAATTTCAAGTTGGGCACCGTAAACACACTAAAAGATGCCCCCCCCCCTCCCCAAATAGTCCAGTTTAGGCAATATATCACATTTCCTGTAAAAGATAACATAAAGTTGTCAACTGAAAAATCTTTTTGATGTTACCTTGAACATTTTGTCAGTTGACTATTTTTGATCCATTTTACAGGAACCGAGATAAGTAGGCTCAAAAATGAAATTCCGGTGGTCATTCTATTAGAGTGGTTACGGATTTACATGTATTTCTTGGAAGAAAAAGATTTGTGGAGTTTGTAAAACTTCAAGTTTCAGAATTTATGAAATTCGCAAACTCTCTGTATTTGCTTAAATACCGTAACCACTCTAATAGAAGATCACTCTATGCTTGCACTTCGATCTAATTTATCCCACTTCTTGTGAAAGATATCAAAAAGTAGTCAATAGGTTTTTGATATTATGATGAACATATTATCAGTTGAACACTTTTTGATATCTTTCACAGAAACCGAAACAATTGAGTTCAAAATTAGAATTTACGGGTGGGGCATTCTAATACAGTGTTTGCGGTGGTTAGATTTGCTTAATCGTGACAAATAAGCGATTTCTTCAATTTTTGAATTACCGAAAATCTGAATACTATGAATTTTTCACACAAAATACATTGTTACATAACGAATTGACTTAAATACATCACAGGATAACCAGATGAACATAACGAGAAAAAACCAAAAAACGAGACGGAAATGAAAAAAAATTGAATGTAGCGTAGCAAAAAATATGTTGATGTGAAGAATGTGATACACATATCATAGGAAATAACGGGGAAAACATAACTACCGAACCCGAGAGACTTGTAAGCAGGAGGCCCTACTCGTATTTCTCTGAAATTTCTAATGAGGAGACATGATGATGAGAGGGGAATAGAGGGGAGGAAAGTAAGAAGTCGTTGGACATTTTCATTAGAAATTCCAATAGATGGGCT</canonical>
            <polymorphic>GGTTTATTGGAAAATGAATTTTTTTCCAAAAATTTCAAGTTGGGCACCGTAAACACACTAAAAGATGCCCCCCCCCCTCCCCAAATAGTCCAGTTTAGGCAATATATCACATTTCCTGTAAAAGATAACATAAAGTTGTCAACTGAAAAATCTTTTTGATGTTACCTTGAACATTTTGTCAGTTGACTATTTTTGATCCATTTTACAGGAACCGAGATAAGTAGGCTCAAAAATGAAATTCCGGTGGTCATTCTATTAGAGTGGTTACGGATTTACATGTATTTCTTGGAAGAAAAAGATTTGTGGAGTTTGTAAAACTTCAAGTTTCAGAATTTATGAAATTCGCAAACTCTCTGTATTTGCTTAAATACCGTAACCACTCTAATAGAAGATCACTCTATGCTTGCACTTCGATCTAATTTATCCCACTTCTTGTGAAAGATATCAAAAAGTAGTCAATAGGTTTTTGATATTATGATGAACATATTATCAGTTGAACMCTTTTTGATATCTTTCACAGAAACCGAAACAATTGAGTTCAAAATTAGAATTTACGGGTGGGGCATTCTAATACAGTGTTTGCGGTGGTTAGATTTGCTTAATCGTGACAAATAAGCGATTTCTTCAATTTTTGAATTACCGAAAATCTGAATACTATGAATTTTTCACACAAAATACATTGTTACATAACGAATTGACTTAAATACATCACAGGATAACCAGATGAACATAACGAGAAAAAACCAAAAAACGAGACGGAAATGAAAAAAAATTGAATGTAGCGTAGCAAAAAATATGTTGATGTGAAGAATGTGATACACATATCATAGGAAATAACGGGGAAAACATAACTACCGAACCCGAGAGACTTGTAAGCAGGAGGCCCTACTCGTATTTCTCTGAAATTTCTAATGAGGAGACATGATGATGAGAGGGGAATAGAGGGGAGGAAAGTAAGAAGTCGTTGGACATTTTCATTAGAAATTCCAATAGATGGGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>180 137 95 74 63 61 52 46 43 42 41 20 20 18 17 17 16 13 9 9 9 9 5 2 2</canonical_bands>
                <polymorphic_bands>180 137 95 80 74 61 52 46 43 42 41 20 20 18 17 16 13 9 9 9 9 5 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTCGCAAACTCTCTGTATTT</pcr_primer_p1>
		<pcr_primer_p2>TCACGATTAAGCAAATCTAACC</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>AATTCGCAAACTCTCTGTATTTGCTTAAATACCGTAACCACTCTAATAGAAGATCACTCTATGCTTGCACTTCGATCTAATTTATCCCACTTCTTGTGAAAGATATCAAAAAGTAGTCAATAGGTTTTTGATATTATGATGAACATATTATCAGTTGAACACTTTTTGATATCTTTCACAGAAACCGAAACAATTGAGTTCAAAATTAGAATTTACGGGTGGGGCATTCTAATACAGTGTTTGCGGTGGTTAGATTTGCTTAATCGTGA</canonical_amplicon>
		<polymorphic_amplicon>AATTCGCAAACTCTCTGTATTTGCTTAAATACCGTAACCACTCTAATAGAAGATCACTCTATGCTTGCACTTCGATCTAATTTATCCCACTTCTTGTGAAAGATATCAAAAAGTAGTCAATAGGTTTTTGATATTATGATGAACATATTATCAGTTGAACMCTTTTTGATATCTTTCACAGAAACCGAAACAATTGAGTTCAAAATTAGAATTTACGGGTGGGGCATTCTAATACAGTGTTTGCGGTGGTTAGATTTGCTTAATCGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26209</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>567828</contig_pos>
        <strand>+</strand>
        <context>ttaaaaaata[G/T]CATTTTTGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTGTGCAAACACACTACGGGGTTTTGCAGAATTTTTTATTTAAAAAATA</left_flank>
        <right_flank>CATTTTTGAGAATTTTCAAAGTATTTTTCCGGTGTCTAACCATTTTATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATTGTAGATGGTCATTCTGAAATTGGAAATTTTCGTTTTTGAAAAATTGGGTTTTTCAAAGTTAGGGTTACGATCTGGGTAGGAAGGGAAGAATGGAGATTCGGGAATTCCAGTAGGTTTTTTTTTGAAATTTTCAGAATTCCAGATTTTCATCGATTTTCCAAATTTCATAGCTGGAATTCTAGAAAAAAATTTTACAAAAATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGAGTATTTTTTTTTCAGTCTGAATACGGTAGCGATATCGAAGCGGAGAGTCTGAATAGCACTCAAACGGTGGAGACGCATACACTTCTCTGCGTCTCAACCTTTTTTTTCTCAGACAAGCATAATAAACATTTTTGGACAAGCTAAAATTTATTTTTCCGAGTATTACGGTGGACAGACGTCCGCAAACACTTTACGCAATATTGCGGAGATGTGTGCAAACACACTACGGGGTTTTGCAGAATTTTTTATTTAAAAAATAACATTTTTGAGAATTTTCAAAGTATTTTTCCGGTGTCTAACCATTTTATGGTCTAAAATCAACAACAATTTTGAATATAAAAACTCTTTCCCATCACATTTTACTTTTAATTTCCAAAAAATGTGTGAAAAGACTGAAACAATGTGTAAAGGCAAAATGCAGTGTTGGACAAGTGAAATAGAGATAGAGATAAATATTGGTTAGAAGCCGGGAAAAGGGTATTTTGTAGAGACACATGAAACATATATAGTGATAAATAAGTCAATGGGGGGCGACTGCACAAAAATAGATCTAAAATAGAAGAGAGAGACAGAGAGATTTCATTTTTCAAATTGGAACAAGAGATTCATAGGGGGTGGTGCTTCAGGGGGTAACTAGCCGATGACTAGAACAACTATAATAACCGGAGAGCACACAAAATTACTGTTTGAGATATTTAGGTGAGATGGGTGATTTTTTTTAAAAGTACATAACAATTAAGCTTCTTCGGCAGCAGCTTCA</canonical>
            <polymorphic>CAAATTGTAGATGGTCATTCTGAAATTGGAAATTTTCGTTTTTGAAAAATTGGGTTTTTCAAAGTTAGGGTTACGATCTGGGTAGGAAGGGAAGAATGGAGATTCGGGAATTCCAGTAGGTTTTTTTTTGAAATTTTCAGAATTCCAGATTTTCATCGATTTTCCAAATTTCATAGCTGGAATTCTAGAAAAAAATTTTACAAAAATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGAGTATTTTTTTTTCAGTCTGAATACGGTAGCGATATCGAAGCGGAGAGTCTGAATAGCACTCAAACGGTGGAGACGCATACACTTCTCTGCGTCTCAACCTTTTTTTTCTCAGACAAGCATAATAAACATTTTTGGACAAGCTAAAATTTATTTTTCCGAGTATTACGGTGGACAGACGTCCGCAAACACTTTACGCAATATTGCGGAGATGTGTGCAAACACACTACGGGGTTTTGCAGAATTTTTTATTTAAAAAATAKCATTTTTGAGAATTTTCAAAGTATTTTTCCGGTGTCTAACCATTTTATGGTCTAAAATCAACAACAATTTTGAATATAAAAACTCTTTCCCATCACATTTTACTTTTAATTTCCAAAAAATGTGTGAAAAGACTGAAACAATGTGTAAAGGCAAAATGCAGTGTTGGACAAGTGAAATAGAGATAGAGATAAATATTGGTTAGAAGCCGGGAAAAGGGTATTTTGTAGAGACACATGAAACATATATAGTGATAAATAAGTCAATGGGGGGCGACTGCACAAAAATAGATCTAAAATAGAAGAGAGAGACAGAGAGATTTCATTTTTCAAATTGGAACAAGAGATTCATAGGGGGTGGTGCTTCAGGGGGTAACTAGCCGATGACTAGAACAACTATAATAACCGGAGAGCACACAAAATTACTGTTTGAGATATTTAGGTGAGATGGGTGATTTTTTTTAAAAGTACATAACAATTAAGCTTCTTCGGCAGCAGCTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTATTTTTCCGAGTATTACG</pcr_primer_p1>
		<pcr_primer_p2>TTTCAGTCTTTTCACACATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>AAATTTATTTTTCCGAGTATTACGGTGGACAGACGTCCGCAAACACTTTACGCAATATTGCGGAGATGTGTGCAAACACACTACGGGGTTTTGCAGAATTTTTTATTTAAAAAATAACATTTTTGAGAATTTTCAAAGTATTTTTCCGGTGTCTAACCATTTTATGGTCTAAAATCAACAACAATTTTGAATATAAAAACTCTTTCCCATCACATTTTACTTTTAATTTCCAAAAAATGTGTGAAAAGACTGAAA</canonical_amplicon>
		<polymorphic_amplicon>AAATTTATTTTTCCGAGTATTACGGTGGACAGACGTCCGCAAACACTTTACGCAATATTGCGGAGATGTGTGCAAACACACTACGGGGTTTTGCAGAATTTTTTATTTAAAAAATAKCATTTTTGAGAATTTTCAAAGTATTTTTCCGGTGTCTAACCATTTTATGGTCTAAAATCAACAACAATTTTGAATATAAAAACTCTTTCCCATCACATTTTACTTTTAATTTCCAAAAAATGTGTGAAAAGACTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26210</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>567919</contig_pos>
        <strand>+</strand>
        <context>AACTCTTTCC[C/G]ATCACATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CATTTTATGGTCTAAAATCAACAACAATTTTGAATATAAAAACTCTTTCC</left_flank>
        <right_flank>ATCACATTTTACTTTTAATTTCCAAAAAATGTGTGAAAAGACTGAAACAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAATGGAGATTCGGGAATTCCAGTAGGTTTTTTTTTGAAATTTTCAGAATTCCAGATTTTCATCGATTTTCCAAATTTCATAGCTGGAATTCTAGAAAAAAATTTTACAAAAATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGAGTATTTTTTTTTCAGTCTGAATACGGTAGCGATATCGAAGCGGAGAGTCTGAATAGCACTCAAACGGTGGAGACGCATACACTTCTCTGCGTCTCAACCTTTTTTTTCTCAGACAAGCATAATAAACATTTTTGGACAAGCTAAAATTTATTTTTCCGAGTATTACGGTGGACAGACGTCCGCAAACACTTTACGCAATATTGCGGAGATGTGTGCAAACACACTACGGGGTTTTGCAGAATTTTTTATTTAAAAAATAACATTTTTGAGAATTTTCAAAGTATTTTTCCGGTGTCTAACCATTTTATGGTCTAAAATCAACAACAATTTTGAATATAAAAACTCTTTCCCATCACATTTTACTTTTAATTTCCAAAAAATGTGTGAAAAGACTGAAACAATGTGTAAAGGCAAAATGCAGTGTTGGACAAGTGAAATAGAGATAGAGATAAATATTGGTTAGAAGCCGGGAAAAGGGTATTTTGTAGAGACACATGAAACATATATAGTGATAAATAAGTCAATGGGGGGCGACTGCACAAAAATAGATCTAAAATAGAAGAGAGAGACAGAGAGATTTCATTTTTCAAATTGGAACAAGAGATTCATAGGGGGTGGTGCTTCAGGGGGTAACTAGCCGATGACTAGAACAACTATAATAACCGGAGAGCACACAAAATTACTGTTTGAGATATTTAGGTGAGATGGGTGATTTTTTTTAAAAGTACATAACAATTAAGCTTCTTCGGCAGCAGCTTCAGCGGACGACGATTCGGACAGGGCTTCTGCTTCTTCTCGTTCTTTGGCAGCGCGTTCTGGAAAAATGTAGTTTTTCAAAAATCGAAACTTTC</canonical>
            <polymorphic>AAGAATGGAGATTCGGGAATTCCAGTAGGTTTTTTTTTGAAATTTTCAGAATTCCAGATTTTCATCGATTTTCCAAATTTCATAGCTGGAATTCTAGAAAAAAATTTTACAAAAATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGAGTATTTTTTTTTCAGTCTGAATACGGTAGCGATATCGAAGCGGAGAGTCTGAATAGCACTCAAACGGTGGAGACGCATACACTTCTCTGCGTCTCAACCTTTTTTTTCTCAGACAAGCATAATAAACATTTTTGGACAAGCTAAAATTTATTTTTCCGAGTATTACGGTGGACAGACGTCCGCAAACACTTTACGCAATATTGCGGAGATGTGTGCAAACACACTACGGGGTTTTGCAGAATTTTTTATTTAAAAAATAACATTTTTGAGAATTTTCAAAGTATTTTTCCGGTGTCTAACCATTTTATGGTCTAAAATCAACAACAATTTTGAATATAAAAACTCTTTCCSATCACATTTTACTTTTAATTTCCAAAAAATGTGTGAAAAGACTGAAACAATGTGTAAAGGCAAAATGCAGTGTTGGACAAGTGAAATAGAGATAGAGATAAATATTGGTTAGAAGCCGGGAAAAGGGTATTTTGTAGAGACACATGAAACATATATAGTGATAAATAAGTCAATGGGGGGCGACTGCACAAAAATAGATCTAAAATAGAAGAGAGAGACAGAGAGATTTCATTTTTCAAATTGGAACAAGAGATTCATAGGGGGTGGTGCTTCAGGGGGTAACTAGCCGATGACTAGAACAACTATAATAACCGGAGAGCACACAAAATTACTGTTTGAGATATTTAGGTGAGATGGGTGATTTTTTTTAAAAGTACATAACAATTAAGCTTCTTCGGCAGCAGCTTCAGCGGACGACGATTCGGACAGGGCTTCTGCTTCTTCTCGTTCTTTGGCAGCGCGTTCTGGAAAAATGTAGTTTTTCAAAAATCGAAACTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGTATTTTTCCGGTGTCTAAC</pcr_primer_p1>
		<pcr_primer_p2>CCCCATTGACTTATTTATCACTAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAAGTATTTTTCCGGTGTCTAACCATTTTATGGTCTAAAATCAACAACAATTTTGAATATAAAAACTCTTTCCCATCACATTTTACTTTTAATTTCCAAAAAATGTGTGAAAAGACTGAAACAATGTGTAAAGGCAAAATGCAGTGTTGGACAAGTGAAATAGAGATAGAGATAAATATTGGTTAGAAGCCGGGAAAAGGGTATTTTGTAGAGACACATGAAACATATATAGTGATAAATAAGTCAATGGGG</canonical_amplicon>
		<polymorphic_amplicon>AAAGTATTTTTCCGGTGTCTAACCATTTTATGGTCTAAAATCAACAACAATTTTGAATATAAAAACTCTTTCCSATCACATTTTACTTTTAATTTCCAAAAAATGTGTGAAAAGACTGAAACAATGTGTAAAGGCAAAATGCAGTGTTGGACAAGTGAAATAGAGATAGAGATAAATATTGGTTAGAAGCCGGGAAAAGGGTATTTTGTAGAGACACATGAAACATATATAGTGATAAATAAGTCAATGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26211</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>568245</contig_pos>
        <strand>+</strand>
        <context>AGAGCACACA[A/C]AWTTACTGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGGGTAACTAGCCGATGACTAGAACAACTATAATAACCGGAGAGCACACA</left_flank>
        <right_flank>AATTACTGTTTGAGATATTTAGGTGAGATGGGTGATTTTTTTTAAAAGTA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCGCAAACACTTTACGCAATATTGCGGAGATGTGTGCAAACACACTACGGGGTTTTGCAGAATTTTTTATTTAAAAAATAACATTTTTGAGAATTTTCAAAGTATTTTTCCGGTGTCTAACCATTTTATGGTCTAAAATCAACAACAATTTTGAATATAAAAACTCTTTCCCATCACATTTTACTTTTAATTTCCAAAAAATGTGTGAAAAGACTGAAACAATGTGTAAAGGCAAAATGCAGTGTTGGACAAGTGAAATAGAGATAGAGATAAATATTGGTTAGAAGCCGGGAAAAGGGTATTTTGTAGAGACACATGAAACATATATAGTGATAAATAAGTCAATGGGGGGCGACTGCACAAAAATAGATCTAAAATAGAAGAGAGAGACAGAGAGATTTCATTTTTCAAATTGGAACAAGAGATTCATAGGGGGTGGTGCTTCAGGGGGTAACTAGCCGATGACTAGAACAACTATAATAACCGGAGAGCACACAAAATTACTGTTTGAGATATTTAGGTGAGATGGGTGATTTTTTTTAAAAGTACATAACAATTAAGCTTCTTCGGCAGCAGCTTCAGCGGACGACGATTCGGACAGGGCTTCTGCTTCTTCTCGTTCTTTGGCAGCGCGTTCTGGAAAAATGTAGTTTTTCAAAAATCGAAACTTTCAGAGATTTTTAGATTTTGTGAATCTTTACGCGAAAATGCACGGATCCAGTCAGCGGTCGCCGATTTTCGATCAATCAAATTTAAGCCTTACCCCGACGTTTCCGAACCACGGCGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTTTTGAATAGTGGTTTTTGCACAGCAAATGCGTATTGCTCATTTCAATTTGTTGTTTTTTTCCTGCTTTTTTATTCGTTCTCACCTATACTCCAAATAATGATAGGTTCACACTCGGAAACTCTCCAAAAATCGAAAACAACTCAGGCGTCGCCAGTTACTTCTGGCCGGAGCTTGAT</canonical>
            <polymorphic>GTCCGCAAACACTTTACGCAATATTGCGGAGATGTGTGCAAACACACTACGGGGTTTTGCAGAATTTTTTATTTAAAAAATAACATTTTTGAGAATTTTCAAAGTATTTTTCCGGTGTCTAACCATTTTATGGTCTAAAATCAACAACAATTTTGAATATAAAAACTCTTTCCCATCACATTTTACTTTTAATTTCCAAAAAATGTGTGAAAAGACTGAAACAATGTGTAAAGGCAAAATGCAGTGTTGGACAAGTGAAATAGAGATAGAGATAAATATTGGTTAGAAGCCGGGAAAAGGGTATTTTGTAGAGACACATGAAACATATATAGTGATAAATAAGTCAATGGGGGGCGACTGCACAAAAATAGATCTAAAATAGAAGAGAGAGACAGAGAGATTTCATTTTTCAAATTGGAACAAGAGATTCATAGGGGGTGGTGCTTCAGGGGGTAACTAGCCGATGACTAGAACAACTATAATAACCGGAGAGCACACAMAATTACTGTTTGAGATATTTAGGTGAGATGGGTGATTTTTTTTAAAAGTACATAACAATTAAGCTTCTTCGGCAGCAGCTTCAGCGGACGACGATTCGGACAGGGCTTCTGCTTCTTCTCGTTCTTTGGCAGCGCGTTCTGGAAAAATGTAGTTTTTCAAAAATCGAAACTTTCAGAGATTTTTAGATTTTGTGAATCTTTACGCGAAAATGCACGGATCCAGTCAGCGGTCGCCGATTTTCGATCAATCAAATTTAAGCCTTACCCCGACGTTTCCGAACCACGGCGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTTTTGAATAGTGGTTTTTGCACAGCAAATGCGTATTGCTCATTTCAATTTGTTGTTTTTTTCCTGCTTTTTTATTCGTTCTCACCTATACTCCAAATAATGATAGGTTCACACTCGGAAACTCTCCAAAAATCGAAAACAACTCAGGCGTCGCCAGTTACTTCTGGCCGGAGCTTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAGAGAGACAGAGAGATTTCAT</pcr_primer_p1>
		<pcr_primer_p2>AAGAACGAGAAGAAGCAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAGAGAGAGACAGAGAGATTTCATTTTTCAAATTGGAACAAGAGATTCATAGGGGGTGGTGCTTCAGGGGGTAACTAGCCGATGACTAGAACAACTATAATAACCGGAGAGCACACAAAATTACTGTTTGAGATATTTAGGTGAGATGGGTGATTTTTTTTAAAAGTACATAACAATTAAGCTTCTTCGGCAGCAGCTTCAGCGGACGACGATTCGGACAGGGCTTCTGCTTCTTCTCGTTCTT</canonical_amplicon>
		<polymorphic_amplicon>AAGAGAGAGACAGAGAGATTTCATTTTTCAAATTGGAACAAGAGATTCATAGGGGGTGGTGCTTCAGGGGGTAACTAGCCGATGACTAGAACAACTATAATAACCGGAGAGCACACAMAATTACTGTTTGAGATATTTAGGTGAGATGGGTGATTTTTTTTAAAAGTACATAACAATTAAGCTTCTTCGGCAGCAGCTTCAGCGGACGACGATTCGGACAGGGCTTCTGCTTCTTCTCGTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26212</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>568247</contig_pos>
        <strand>+</strand>
        <context>AGCACACAMA[A/T]TTACTGTTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTAACTAGCCGATGACTAGAACAACTATAATAACCGGAGAGCACACAAA</left_flank>
        <right_flank>TTACTGTTTGAGATATTTAGGTGAGATGGGTGATTTTTTTTAAAAGTACA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGCAAACACTTTACGCAATATTGCGGAGATGTGTGCAAACACACTACGGGGTTTTGCAGAATTTTTTATTTAAAAAATAACATTTTTGAGAATTTTCAAAGTATTTTTCCGGTGTCTAACCATTTTATGGTCTAAAATCAACAACAATTTTGAATATAAAAACTCTTTCCCATCACATTTTACTTTTAATTTCCAAAAAATGTGTGAAAAGACTGAAACAATGTGTAAAGGCAAAATGCAGTGTTGGACAAGTGAAATAGAGATAGAGATAAATATTGGTTAGAAGCCGGGAAAAGGGTATTTTGTAGAGACACATGAAACATATATAGTGATAAATAAGTCAATGGGGGGCGACTGCACAAAAATAGATCTAAAATAGAAGAGAGAGACAGAGAGATTTCATTTTTCAAATTGGAACAAGAGATTCATAGGGGGTGGTGCTTCAGGGGGTAACTAGCCGATGACTAGAACAACTATAATAACCGGAGAGCACACAAAATTACTGTTTGAGATATTTAGGTGAGATGGGTGATTTTTTTTAAAAGTACATAACAATTAAGCTTCTTCGGCAGCAGCTTCAGCGGACGACGATTCGGACAGGGCTTCTGCTTCTTCTCGTTCTTTGGCAGCGCGTTCTGGAAAAATGTAGTTTTTCAAAAATCGAAACTTTCAGAGATTTTTAGATTTTGTGAATCTTTACGCGAAAATGCACGGATCCAGTCAGCGGTCGCCGATTTTCGATCAATCAAATTTAAGCCTTACCCCGACGTTTCCGAACCACGGCGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTTTTGAATAGTGGTTTTTGCACAGCAAATGCGTATTGCTCATTTCAATTTGTTGTTTTTTTCCTGCTTTTTTATTCGTTCTCACCTATACTCCAAATAATGATAGGTTCACACTCGGAAACTCTCCAAAAATCGAAAACAACTCAGGCGTCGCCAGTTACTTCTGGCCGGAGCTTGATCA</canonical>
            <polymorphic>CCGCAAACACTTTACGCAATATTGCGGAGATGTGTGCAAACACACTACGGGGTTTTGCAGAATTTTTTATTTAAAAAATAACATTTTTGAGAATTTTCAAAGTATTTTTCCGGTGTCTAACCATTTTATGGTCTAAAATCAACAACAATTTTGAATATAAAAACTCTTTCCCATCACATTTTACTTTTAATTTCCAAAAAATGTGTGAAAAGACTGAAACAATGTGTAAAGGCAAAATGCAGTGTTGGACAAGTGAAATAGAGATAGAGATAAATATTGGTTAGAAGCCGGGAAAAGGGTATTTTGTAGAGACACATGAAACATATATAGTGATAAATAAGTCAATGGGGGGCGACTGCACAAAAATAGATCTAAAATAGAAGAGAGAGACAGAGAGATTTCATTTTTCAAATTGGAACAAGAGATTCATAGGGGGTGGTGCTTCAGGGGGTAACTAGCCGATGACTAGAACAACTATAATAACCGGAGAGCACACAAAWTTACTGTTTGAGATATTTAGGTGAGATGGGTGATTTTTTTTAAAAGTACATAACAATTAAGCTTCTTCGGCAGCAGCTTCAGCGGACGACGATTCGGACAGGGCTTCTGCTTCTTCTCGTTCTTTGGCAGCGCGTTCTGGAAAAATGTAGTTTTTCAAAAATCGAAACTTTCAGAGATTTTTAGATTTTGTGAATCTTTACGCGAAAATGCACGGATCCAGTCAGCGGTCGCCGATTTTCGATCAATCAAATTTAAGCCTTACCCCGACGTTTCCGAACCACGGCGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTTTTGAATAGTGGTTTTTGCACAGCAAATGCGTATTGCTCATTTCAATTTGTTGTTTTTTTCCTGCTTTTTTATTCGTTCTCACCTATACTCCAAATAATGATAGGTTCACACTCGGAAACTCTCCAAAAATCGAAAACAACTCAGGCGTCGCCAGTTACTTCTGGCCGGAGCTTGATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>222 195 135 116 88 60 56 55 42 31</canonical_bands>
                <polymorphic_bands>222 195 144 135 116 60 55 42 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAGAGAGACAGAGAGATTTCAT</pcr_primer_p1>
		<pcr_primer_p2>AAGAACGAGAAGAAGCAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAGAGAGAGACAGAGAGATTTCATTTTTCAAATTGGAACAAGAGATTCATAGGGGGTGGTGCTTCAGGGGGTAACTAGCCGATGACTAGAACAACTATAATAACCGGAGAGCACACAAAATTACTGTTTGAGATATTTAGGTGAGATGGGTGATTTTTTTTAAAAGTACATAACAATTAAGCTTCTTCGGCAGCAGCTTCAGCGGACGACGATTCGGACAGGGCTTCTGCTTCTTCTCGTTCTT</canonical_amplicon>
		<polymorphic_amplicon>AAGAGAGAGACAGAGAGATTTCATTTTTCAAATTGGAACAAGAGATTCATAGGGGGTGGTGCTTCAGGGGGTAACTAGCCGATGACTAGAACAACTATAATAACCGGAGAGCACACAAAWTTACTGTTTGAGATATTTAGGTGAGATGGGTGATTTTTTTTAAAAGTACATAACAATTAAGCTTCTTCGGCAGCAGCTTCAGCGGACGACGATTCGGACAGGGCTTCTGCTTCTTCTCGTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26213</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>568281</contig_pos>
        <strand>+</strand>
        <context>AGATGGGTGA[G/T]TTTTTTTAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCGGAGAGCACACAAAATTACTGTTTGAGATATTTAGGTGAGATGGGTGA</left_flank>
        <right_flank>TTTTTTTAAAAGTACATAACAATTAAGCTTCTTCGGCAGCAGCTTCAGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCAAACACACTACGGGGTTTTGCAGAATTTTTTATTTAAAAAATAACATTTTTGAGAATTTTCAAAGTATTTTTCCGGTGTCTAACCATTTTATGGTCTAAAATCAACAACAATTTTGAATATAAAAACTCTTTCCCATCACATTTTACTTTTAATTTCCAAAAAATGTGTGAAAAGACTGAAACAATGTGTAAAGGCAAAATGCAGTGTTGGACAAGTGAAATAGAGATAGAGATAAATATTGGTTAGAAGCCGGGAAAAGGGTATTTTGTAGAGACACATGAAACATATATAGTGATAAATAAGTCAATGGGGGGCGACTGCACAAAAATAGATCTAAAATAGAAGAGAGAGACAGAGAGATTTCATTTTTCAAATTGGAACAAGAGATTCATAGGGGGTGGTGCTTCAGGGGGTAACTAGCCGATGACTAGAACAACTATAATAACCGGAGAGCACACAAAATTACTGTTTGAGATATTTAGGTGAGATGGGTGATTTTTTTTAAAAGTACATAACAATTAAGCTTCTTCGGCAGCAGCTTCAGCGGACGACGATTCGGACAGGGCTTCTGCTTCTTCTCGTTCTTTGGCAGCGCGTTCTGGAAAAATGTAGTTTTTCAAAAATCGAAACTTTCAGAGATTTTTAGATTTTGTGAATCTTTACGCGAAAATGCACGGATCCAGTCAGCGGTCGCCGATTTTCGATCAATCAAATTTAAGCCTTACCCCGACGTTTCCGAACCACGGCGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTTTTGAATAGTGGTTTTTGCACAGCAAATGCGTATTGCTCATTTCAATTTGTTGTTTTTTTCCTGCTTTTTTATTCGTTCTCACCTATACTCCAAATAATGATAGGTTCACACTCGGAAACTCTCCAAAAATCGAAAACAACTCAGGCGTCGCCAGTTACTTCTGGCCGGAGCTTGATCAGATTCCGACAAGGACATTGTGGGAAGCCGACCAA</canonical>
            <polymorphic>TGCAAACACACTACGGGGTTTTGCAGAATTTTTTATTTAAAAAATAACATTTTTGAGAATTTTCAAAGTATTTTTCCGGTGTCTAACCATTTTATGGTCTAAAATCAACAACAATTTTGAATATAAAAACTCTTTCCCATCACATTTTACTTTTAATTTCCAAAAAATGTGTGAAAAGACTGAAACAATGTGTAAAGGCAAAATGCAGTGTTGGACAAGTGAAATAGAGATAGAGATAAATATTGGTTAGAAGCCGGGAAAAGGGTATTTTGTAGAGACACATGAAACATATATAGTGATAAATAAGTCAATGGGGGGCGACTGCACAAAAATAGATCTAAAATAGAAGAGAGAGACAGAGAGATTTCATTTTTCAAATTGGAACAAGAGATTCATAGGGGGTGGTGCTTCAGGGGGTAACTAGCCGATGACTAGAACAACTATAATAACCGGAGAGCACACAAAATTACTGTTTGAGATATTTAGGTGAGATGGGTGAKTTTTTTTAAAAGTACATAACAATTAAGCTTCTTCGGCAGCAGCTTCAGCGGACGACGATTCGGACAGGGCTTCTGCTTCTTCTCGTTCTTTGGCAGCGCGTTCTGGAAAAATGTAGTTTTTCAAAAATCGAAACTTTCAGAGATTTTTAGATTTTGTGAATCTTTACGCGAAAATGCACGGATCCAGTCAGCGGTCGCCGATTTTCGATCAATCAAATTTAAGCCTTACCCCGACGTTTCCGAACCACGGCGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTTTTGAATAGTGGTTTTTGCACAGCAAATGCGTATTGCTCATTTCAATTTGTTGTTTTTTTCCTGCTTTTTTATTCGTTCTCACCTATACTCCAAATAATGATAGGTTCACACTCGGAAACTCTCCAAAAATCGAAAACAACTCAGGCGTCGCCAGTTACTTCTGGCCGGAGCTTGATCAGATTCCGACAAGGACATTGTGGGAAGCCGACCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGCCGATGACTAGAACAACTA</pcr_primer_p1>
		<pcr_primer_p2>GCGTAAAGATTCACAAAATCTAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTAGCCGATGACTAGAACAACTATAATAACCGGAGAGCACACAAAATTACTGTTTGAGATATTTAGGTGAGATGGGTGATTTTTTTTAAAAGTACATAACAATTAAGCTTCTTCGGCAGCAGCTTCAGCGGACGACGATTCGGACAGGGCTTCTGCTTCTTCTCGTTCTTTGGCAGCGCGTTCTGGAAAAATGTAGTTTTTCAAAAATCGAAACTTTCAGAGATTTTTAGATTTTGTGAATCTTTACGC</canonical_amplicon>
		<polymorphic_amplicon>CTAGCCGATGACTAGAACAACTATAATAACCGGAGAGCACACAAAATTACTGTTTGAGATATTTAGGTGAGATGGGTGAKTTTTTTTAAAAGTACATAACAATTAAGCTTCTTCGGCAGCAGCTTCAGCGGACGACGATTCGGACAGGGCTTCTGCTTCTTCTCGTTCTTTGGCAGCGCGTTCTGGAAAAATGTAGTTTTTCAAAAATCGAAACTTTCAGAGATTTTTAGATTTTGTGAATCTTTACGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26214</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>568310</contig_pos>
        <strand></strand>
        <context>ACAATTAAGC[T/G]TCTTCGGCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATATTTAGGTGAGATGGGTGATTTTTTTTAAAAGTACATAACAATTAAGC</left_flank>
        <right_flank>TCTTCGGCAGCAGCTTCAGCGGACGACGATTCGGACAGGGCTTCTGCTTC</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTATTTAAAAAATAACATTTTTGAGAATTTTCAAAGTATTTTTCCGGTGTCTAACCATTTTATGGTCTAAAATCAACAACAATTTTGAATATAAAAACTCTTTCCCATCACATTTTACTTTTAATTTCCAAAAAATGTGTGAAAAGACTGAAACAATGTGTAAAGGCAAAATGCAGTGTTGGACAAGTGAAATAGAGATAGAGATAAATATTGGTTAGAAGCCGGGAAAAGGGTATTTTGTAGAGACACATGAAACATATATAGTGATAAATAAGTCAATGGGGGGCGACTGCACAAAAATAGATCTAAAATAGAAGAGAGAGACAGAGAGATTTCATTTTTCAAATTGGAACAAGAGATTCATAGGGGGTGGTGCTTCAGGGGGTAACTAGCCGATGACTAGAACAACTATAATAACCGGAGAGCACACAAAATTACTGTTTGAGATATTTAGGTGAGATGGGTGATTTTTTTTAAAAGTACATAACAATTAAGCTTCTTCGGCAGCAGCTTCAGCGGACGACGATTCGGACAGGGCTTCTGCTTCTTCTCGTTCTTTGGCAGCGCGTTCTGGAAAAATGTAGTTTTTCAAAAATCGAAACTTTCAGAGATTTTTAGATTTTGTGAATCTTTACGCGAAAATGCACGGATCCAGTCAGCGGTCGCCGATTTTCGATCAATCAAATTTAAGCCTTACCCCGACGTTTCCGAACCACGGCGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTTTTGAATAGTGGTTTTTGCACAGCAAATGCGTATTGCTCATTTCAATTTGTTGTTTTTTTCCTGCTTTTTTATTCGTTCTCACCTATACTCCAAATAATGATAGGTTCACACTCGGAAACTCTCCAAAAATCGAAAACAACTCAGGCGTCGCCAGTTACTTCTGGCCGGAGCTTGATCAGATTCCGACAAGGACATTGTGGGAAGCCGACCAAGATCCTACAAACTACCGGCCAGCTTCCGA</canonical>
            <polymorphic>TTTTTATTTAAAAAATAACATTTTTGAGAATTTTCAAAGTATTTTTCCGGTGTCTAACCATTTTATGGTCTAAAATCAACAACAATTTTGAATATAAAAACTCTTTCCCATCACATTTTACTTTTAATTTCCAAAAAATGTGTGAAAAGACTGAAACAATGTGTAAAGGCAAAATGCAGTGTTGGACAAGTGAAATAGAGATAGAGATAAATATTGGTTAGAAGCCGGGAAAAGGGTATTTTGTAGAGACACATGAAACATATATAGTGATAAATAAGTCAATGGGGGGCGACTGCACAAAAATAGATCTAAAATAGAAGAGAGAGACAGAGAGATTTCATTTTTCAAATTGGAACAAGAGATTCATAGGGGGTGGTGCTTCAGGGGGTAACTAGCCGATGACTAGAACAACTATAATAACCGGAGAGCACACAAAATTACTGTTTGAGATATTTAGGTGAGATGGGTGATTTTTTTTAAAAGTACATAACAATTAAGCKTCTTCGGCAGCAGCTTCAGCGGACGACGATTCGGACAGGGCTTCTGCTTCTTCTCGTTCTTTGGCAGCGCGTTCTGGAAAAATGTAGTTTTTCAAAAATCGAAACTTTCAGAGATTTTTAGATTTTGTGAATCTTTACGCGAAAATGCACGGATCCAGTCAGCGGTCGCCGATTTTCGATCAATCAAATTTAAGCCTTACCCCGACGTTTCCGAACCACGGCGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTTTTGAATAGTGGTTTTTGCACAGCAAATGCGTATTGCTCATTTCAATTTGTTGTTTTTTTCCTGCTTTTTTATTCGTTCTCACCTATACTCCAAATAATGATAGGTTCACACTCGGAAACTCTCCAAAAATCGAAAACAACTCAGGCGTCGCCAGTTACTTCTGGCCGGAGCTTGATCAGATTCCGACAAGGACATTGTGGGAAGCCGACCAAGATCCTACAAACTACCGGCCAGCTTCCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>498 416 64 15 7</canonical_bands>
                <polymorphic_bands>513 416 64 7</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>229 224 171 154 103 34 27 26 15 7 6 4</canonical_bands>
                <polymorphic_bands>229 224 171 154 118 34 27 26 7 6 4</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGCCGATGACTAGAACAACTA</pcr_primer_p1>
		<pcr_primer_p2>GCGTAAAGATTCACAAAATCTAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTAGCCGATGACTAGAACAACTATAATAACCGGAGAGCACACAAAATTACTGTTTGAGATATTTAGGTGAGATGGGTGATTTTTTTTAAAAGTACATAACAATTAAGCTTCTTCGGCAGCAGCTTCAGCGGACGACGATTCGGACAGGGCTTCTGCTTCTTCTCGTTCTTTGGCAGCGCGTTCTGGAAAAATGTAGTTTTTCAAAAATCGAAACTTTCAGAGATTTTTAGATTTTGTGAATCTTTACGC</canonical_amplicon>
		<polymorphic_amplicon>CTAGCCGATGACTAGAACAACTATAATAACCGGAGAGCACACAAAATTACTGTTTGAGATATTTAGGTGAGATGGGTGATTTTTTTTAAAAGTACATAACAATTAAGCKTCTTCGGCAGCAGCTTCAGCGGACGACGATTCGGACAGGGCTTCTGCTTCTTCTCGTTCTTTGGCAGCGCGTTCTGGAAAAATGTAGTTTTTCAAAAATCGAAACTTTCAGAGATTTTTAGATTTTGTGAATCTTTACGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26215</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>570570</contig_pos>
        <strand>+</strand>
        <context>GCCAACCCAT[G/T]SWWAAACCRS</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTAATGGGAATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCAT</left_flank>
        <right_flank>CAAAAACCACTATACAAAAAAAAAGTACAAAGTTCCCACAACGACAACTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATGCAGTTCTCCTTCTTCCAGCTCCCTTGGACACTGTCATCGGCACAATTGGCCCGGATGGTTCCTGAGACACCATATCCAATGTCAACGCTCCAGATGAGAATTGCGATGTGAATGTGCTTCGCTTCGCTGCCAACGCTGCGTCTTCGGGTCCCGATCTCTCGCTGGCTCGACGTTGACGCTTAGTCGGACGTTCGATTGACGTGTTGGTGTTGCTTCGTCTTCTGACCTCATCAGTCTCGAGTGGACCGGATTGTGGAACTTCGGCAAGGGTGAGGGGTCCAGAATGTTCGATGTTGTCGGCTGGTGGGAATGCAGGCATCGGAGCGGAACTGGTGTGAGGAGGGCTCAGAATTGGGTCTGCAAAAAAATTTTTCTTCAAAAAATGGATTTATTCGTAAATGTACGACTTGTATAGAGGTGTTGTTCGATTCATCAATTCAAATGCTAATGGGAATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATGCAAAAACCACTATACAAAAAAAAAGTACAAAGTTCCCACAACGACAACTACCGTAACCTATAACTTTTCGATTTTTTTCGAAACCACGACGTTTCAGAACCTGACATTTCAGAACCCGACGTTTCCGAACCCGATGTTCGGTGTGCAAAAACCACTATGCAAAAATGCAGAAAAGTTCTGAAATCTCGAGTTCTGAAACGTCGCGTTTCCAAAACGCTAGGTTTTGATATGTCGAGTACTGAAACGTCTTGGTTCCGAAACGTCCAGGAGCCGAAAACGCACAAGAATCGAGTTAAAAATTTAGAAATAGCAATTTTCAGGGTACGGTAGTTGTCTTGCACAGGTTCTCCGATACTTAAATGAAATATACTCACGAGTAGAACTTCCTTCACTGCTTGCCAATGAGACTGCATGATTCTGTAGTACTGGTGGAATACTGTTATTCTCCATATCCGCGAACTGTGGCGTTGGTGGATACTCTGGAACGTCGTAATCCGAAT</canonical>
            <polymorphic>AGATGCAGTTCTCCTTCTTCCAGCTCCCTTGGACACTGTCATCGGCACAATTGGCCCGGATGGTTCCTGAGACACCATATCCAATGTCAACGCTCCAGATGAGAATTGCGATGTGAATGTGCTTCGCTTCGCTGCCAACGCTGCGTCTTCGGGTCCCGATCTCTCGCTGGCTCGACGTTGACGCTTAGTCGGACGTTCGATTGACGTGTTGGTGTTGCTTCGTCTTCTGACCTCATCAGTCTCGAGTGGACCGGATTGTGGAACTTCGGCAAGGGTGAGGGGTCCAGAATGTTCGATGTTGTCGGCTGGTGGGAATGCAGGCATCGGAGCGGAACTGGTGTGAGGAGGGCTCAGAATTGGGTCTGCAAAAAAATTTTTCTTCAAAAAATGGATTTATTCGTAAATGTACGACTTGTATAGAGGTGTTGTTCGATTCATCAATTCAAATGCTAATGGGAATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATKCAAAAACCACTATACAAAAAAAAAGTACAAAGTTCCCACAACGACAACTACCGTAACCTATAACTTTTCGATTTTTTTCGAAACCACGACGTTTCAGAACCTGACATTTCAGAACCCGACGTTTCCGAACCCGATGTTCGGTGTGCAAAAACCACTATGCAAAAATGCAGAAAAGTTCTGAAATCTCGAGTTCTGAAACGTCGCGTTTCCAAAACGCTAGGTTTTGATATGTCGAGTACTGAAACGTCTTGGTTCCGAAACGTCCAGGAGCCGAAAACGCACAAGAATCGAGTTAAAAATTTAGAAATAGCAATTTTCAGGGTACGGTAGTTGTCTTGCACAGGTTCTCCGATACTTAAATGAAATATACTCACGAGTAGAACTTCCTTCACTGCTTGCCAATGAGACTGCATGATTCTGTAGTACTGGTGGAATACTGTTATTCTCCATATCCGCGAACTGTGGCGTTGGTGGATACTCTGGAACGTCGTAATCCGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>481 414 89 16</canonical_bands>
                <polymorphic_bands>481 430 89</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>312 171 145 135 90 72 48 14 8 5</canonical_bands>
                <polymorphic_bands>312 280 171 90 72 48 14 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATAGAGGTGTTGTTCGATTCAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTGCATAGTGGTTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATAGAGGTGTTGTTCGATTCATCAATTCAAATGCTAATGGGAATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATGCAAAAACCACTATACAAAAAAAAAGTACAAAGTTCCCACAACGACAACTACCGTAACCTATAACTTTTCGATTTTTTTCGAAACCACGACGTTTCAGAACCTGACATTTCAGAACCCGACGTTTCCGAACCCGATGTTCGGTGTGCAAAAACCACTATGCAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TATAGAGGTGTTGTTCGATTCATCAATTCAAATGCTAATGGGAATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATKCAAAAACCACTATACAAAAAAAAAGTACAAAGTTCCCACAACGACAACTACCGTAACCTATAACTTTTCGATTTTTTTCGAAACCACGACGTTTCAGAACCTGACATTTCAGAACCCGACGTTTCCGAACCCGATGTTCGGTGTGCAAAAACCACTATGCAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26216</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>570571</contig_pos>
        <strand>+</strand>
        <context>CCAACCCATK[C/G]WWAAACCRST</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAATGGGAATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATG</left_flank>
        <right_flank>AAAAACCACTATACAAAAAAAAAGTACAAAGTTCCCACAACGACAACTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGCAGTTCTCCTTCTTCCAGCTCCCTTGGACACTGTCATCGGCACAATTGGCCCGGATGGTTCCTGAGACACCATATCCAATGTCAACGCTCCAGATGAGAATTGCGATGTGAATGTGCTTCGCTTCGCTGCCAACGCTGCGTCTTCGGGTCCCGATCTCTCGCTGGCTCGACGTTGACGCTTAGTCGGACGTTCGATTGACGTGTTGGTGTTGCTTCGTCTTCTGACCTCATCAGTCTCGAGTGGACCGGATTGTGGAACTTCGGCAAGGGTGAGGGGTCCAGAATGTTCGATGTTGTCGGCTGGTGGGAATGCAGGCATCGGAGCGGAACTGGTGTGAGGAGGGCTCAGAATTGGGTCTGCAAAAAAATTTTTCTTCAAAAAATGGATTTATTCGTAAATGTACGACTTGTATAGAGGTGTTGTTCGATTCATCAATTCAAATGCTAATGGGAATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATGCAAAAACCACTATACAAAAAAAAAGTACAAAGTTCCCACAACGACAACTACCGTAACCTATAACTTTTCGATTTTTTTCGAAACCACGACGTTTCAGAACCTGACATTTCAGAACCCGACGTTTCCGAACCCGATGTTCGGTGTGCAAAAACCACTATGCAAAAATGCAGAAAAGTTCTGAAATCTCGAGTTCTGAAACGTCGCGTTTCCAAAACGCTAGGTTTTGATATGTCGAGTACTGAAACGTCTTGGTTCCGAAACGTCCAGGAGCCGAAAACGCACAAGAATCGAGTTAAAAATTTAGAAATAGCAATTTTCAGGGTACGGTAGTTGTCTTGCACAGGTTCTCCGATACTTAAATGAAATATACTCACGAGTAGAACTTCCTTCACTGCTTGCCAATGAGACTGCATGATTCTGTAGTACTGGTGGAATACTGTTATTCTCCATATCCGCGAACTGTGGCGTTGGTGGATACTCTGGAACGTCGTAATCCGAATC</canonical>
            <polymorphic>GATGCAGTTCTCCTTCTTCCAGCTCCCTTGGACACTGTCATCGGCACAATTGGCCCGGATGGTTCCTGAGACACCATATCCAATGTCAACGCTCCAGATGAGAATTGCGATGTGAATGTGCTTCGCTTCGCTGCCAACGCTGCGTCTTCGGGTCCCGATCTCTCGCTGGCTCGACGTTGACGCTTAGTCGGACGTTCGATTGACGTGTTGGTGTTGCTTCGTCTTCTGACCTCATCAGTCTCGAGTGGACCGGATTGTGGAACTTCGGCAAGGGTGAGGGGTCCAGAATGTTCGATGTTGTCGGCTGGTGGGAATGCAGGCATCGGAGCGGAACTGGTGTGAGGAGGGCTCAGAATTGGGTCTGCAAAAAAATTTTTCTTCAAAAAATGGATTTATTCGTAAATGTACGACTTGTATAGAGGTGTTGTTCGATTCATCAATTCAAATGCTAATGGGAATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATGSAAAAACCACTATACAAAAAAAAAGTACAAAGTTCCCACAACGACAACTACCGTAACCTATAACTTTTCGATTTTTTTCGAAACCACGACGTTTCAGAACCTGACATTTCAGAACCCGACGTTTCCGAACCCGATGTTCGGTGTGCAAAAACCACTATGCAAAAATGCAGAAAAGTTCTGAAATCTCGAGTTCTGAAACGTCGCGTTTCCAAAACGCTAGGTTTTGATATGTCGAGTACTGAAACGTCTTGGTTCCGAAACGTCCAGGAGCCGAAAACGCACAAGAATCGAGTTAAAAATTTAGAAATAGCAATTTTCAGGGTACGGTAGTTGTCTTGCACAGGTTCTCCGATACTTAAATGAAATATACTCACGAGTAGAACTTCCTTCACTGCTTGCCAATGAGACTGCATGATTCTGTAGTACTGGTGGAATACTGTTATTCTCCATATCCGCGAACTGTGGCGTTGGTGGATACTCTGGAACGTCGTAATCCGAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>312 171 145 135 91 72 48 14 8 4</canonical_bands>
                <polymorphic_bands>312 280 171 91 72 48 14 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATAGAGGTGTTGTTCGATTCAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTGCATAGTGGTTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATAGAGGTGTTGTTCGATTCATCAATTCAAATGCTAATGGGAATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATGCAAAAACCACTATACAAAAAAAAAGTACAAAGTTCCCACAACGACAACTACCGTAACCTATAACTTTTCGATTTTTTTCGAAACCACGACGTTTCAGAACCTGACATTTCAGAACCCGACGTTTCCGAACCCGATGTTCGGTGTGCAAAAACCACTATGCAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TATAGAGGTGTTGTTCGATTCATCAATTCAAATGCTAATGGGAATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATGSAAAAACCACTATACAAAAAAAAAGTACAAAGTTCCCACAACGACAACTACCGTAACCTATAACTTTTCGATTTTTTTCGAAACCACGACGTTTCAGAACCTGACATTTCAGAACCCGACGTTTCCGAACCCGATGTTCGGTGTGCAAAAACCACTATGCAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26217</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>570572</contig_pos>
        <strand>+</strand>
        <context>CAACCCATKS[A/T]WAAACCRSTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATGGGAATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATGC</left_flank>
        <right_flank>AAAACCACTATACAAAAAAAAAGTACAAAGTTCCCACAACGACAACTACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGCAGTTCTCCTTCTTCCAGCTCCCTTGGACACTGTCATCGGCACAATTGGCCCGGATGGTTCCTGAGACACCATATCCAATGTCAACGCTCCAGATGAGAATTGCGATGTGAATGTGCTTCGCTTCGCTGCCAACGCTGCGTCTTCGGGTCCCGATCTCTCGCTGGCTCGACGTTGACGCTTAGTCGGACGTTCGATTGACGTGTTGGTGTTGCTTCGTCTTCTGACCTCATCAGTCTCGAGTGGACCGGATTGTGGAACTTCGGCAAGGGTGAGGGGTCCAGAATGTTCGATGTTGTCGGCTGGTGGGAATGCAGGCATCGGAGCGGAACTGGTGTGAGGAGGGCTCAGAATTGGGTCTGCAAAAAAATTTTTCTTCAAAAAATGGATTTATTCGTAAATGTACGACTTGTATAGAGGTGTTGTTCGATTCATCAATTCAAATGCTAATGGGAATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATGCAAAAACCACTATACAAAAAAAAAGTACAAAGTTCCCACAACGACAACTACCGTAACCTATAACTTTTCGATTTTTTTCGAAACCACGACGTTTCAGAACCTGACATTTCAGAACCCGACGTTTCCGAACCCGATGTTCGGTGTGCAAAAACCACTATGCAAAAATGCAGAAAAGTTCTGAAATCTCGAGTTCTGAAACGTCGCGTTTCCAAAACGCTAGGTTTTGATATGTCGAGTACTGAAACGTCTTGGTTCCGAAACGTCCAGGAGCCGAAAACGCACAAGAATCGAGTTAAAAATTTAGAAATAGCAATTTTCAGGGTACGGTAGTTGTCTTGCACAGGTTCTCCGATACTTAAATGAAATATACTCACGAGTAGAACTTCCTTCACTGCTTGCCAATGAGACTGCATGATTCTGTAGTACTGGTGGAATACTGTTATTCTCCATATCCGCGAACTGTGGCGTTGGTGGATACTCTGGAACGTCGTAATCCGAATCG</canonical>
            <polymorphic>ATGCAGTTCTCCTTCTTCCAGCTCCCTTGGACACTGTCATCGGCACAATTGGCCCGGATGGTTCCTGAGACACCATATCCAATGTCAACGCTCCAGATGAGAATTGCGATGTGAATGTGCTTCGCTTCGCTGCCAACGCTGCGTCTTCGGGTCCCGATCTCTCGCTGGCTCGACGTTGACGCTTAGTCGGACGTTCGATTGACGTGTTGGTGTTGCTTCGTCTTCTGACCTCATCAGTCTCGAGTGGACCGGATTGTGGAACTTCGGCAAGGGTGAGGGGTCCAGAATGTTCGATGTTGTCGGCTGGTGGGAATGCAGGCATCGGAGCGGAACTGGTGTGAGGAGGGCTCAGAATTGGGTCTGCAAAAAAATTTTTCTTCAAAAAATGGATTTATTCGTAAATGTACGACTTGTATAGAGGTGTTGTTCGATTCATCAATTCAAATGCTAATGGGAATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATGCWAAAACCACTATACAAAAAAAAAGTACAAAGTTCCCACAACGACAACTACCGTAACCTATAACTTTTCGATTTTTTTCGAAACCACGACGTTTCAGAACCTGACATTTCAGAACCCGACGTTTCCGAACCCGATGTTCGGTGTGCAAAAACCACTATGCAAAAATGCAGAAAAGTTCTGAAATCTCGAGTTCTGAAACGTCGCGTTTCCAAAACGCTAGGTTTTGATATGTCGAGTACTGAAACGTCTTGGTTCCGAAACGTCCAGGAGCCGAAAACGCACAAGAATCGAGTTAAAAATTTAGAAATAGCAATTTTCAGGGTACGGTAGTTGTCTTGCACAGGTTCTCCGATACTTAAATGAAATATACTCACGAGTAGAACTTCCTTCACTGCTTGCCAATGAGACTGCATGATTCTGTAGTACTGGTGGAATACTGTTATTCTCCATATCCGCGAACTGTGGCGTTGGTGGATACTCTGGAACGTCGTAATCCGAATCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>312 171 145 135 92 72 48 14 8 3</canonical_bands>
                <polymorphic_bands>312 280 171 92 72 48 14 8 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATAGAGGTGTTGTTCGATTCAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTGCATAGTGGTTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATAGAGGTGTTGTTCGATTCATCAATTCAAATGCTAATGGGAATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATGCAAAAACCACTATACAAAAAAAAAGTACAAAGTTCCCACAACGACAACTACCGTAACCTATAACTTTTCGATTTTTTTCGAAACCACGACGTTTCAGAACCTGACATTTCAGAACCCGACGTTTCCGAACCCGATGTTCGGTGTGCAAAAACCACTATGCAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TATAGAGGTGTTGTTCGATTCATCAATTCAAATGCTAATGGGAATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATGCWAAAACCACTATACAAAAAAAAAGTACAAAGTTCCCACAACGACAACTACCGTAACCTATAACTTTTCGATTTTTTTCGAAACCACGACGTTTCAGAACCTGACATTTCAGAACCCGACGTTTCCGAACCCGATGTTCGGTGTGCAAAAACCACTATGCAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26218</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>570573</contig_pos>
        <strand>+</strand>
        <context>AACCCATKSW[A/T]AAACCRSTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGGGAATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATGCA</left_flank>
        <right_flank>AAACCACTATACAAAAAAAAAGTACAAAGTTCCCACAACGACAACTACCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCAGTTCTCCTTCTTCCAGCTCCCTTGGACACTGTCATCGGCACAATTGGCCCGGATGGTTCCTGAGACACCATATCCAATGTCAACGCTCCAGATGAGAATTGCGATGTGAATGTGCTTCGCTTCGCTGCCAACGCTGCGTCTTCGGGTCCCGATCTCTCGCTGGCTCGACGTTGACGCTTAGTCGGACGTTCGATTGACGTGTTGGTGTTGCTTCGTCTTCTGACCTCATCAGTCTCGAGTGGACCGGATTGTGGAACTTCGGCAAGGGTGAGGGGTCCAGAATGTTCGATGTTGTCGGCTGGTGGGAATGCAGGCATCGGAGCGGAACTGGTGTGAGGAGGGCTCAGAATTGGGTCTGCAAAAAAATTTTTCTTCAAAAAATGGATTTATTCGTAAATGTACGACTTGTATAGAGGTGTTGTTCGATTCATCAATTCAAATGCTAATGGGAATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATGCAAAAACCACTATACAAAAAAAAAGTACAAAGTTCCCACAACGACAACTACCGTAACCTATAACTTTTCGATTTTTTTCGAAACCACGACGTTTCAGAACCTGACATTTCAGAACCCGACGTTTCCGAACCCGATGTTCGGTGTGCAAAAACCACTATGCAAAAATGCAGAAAAGTTCTGAAATCTCGAGTTCTGAAACGTCGCGTTTCCAAAACGCTAGGTTTTGATATGTCGAGTACTGAAACGTCTTGGTTCCGAAACGTCCAGGAGCCGAAAACGCACAAGAATCGAGTTAAAAATTTAGAAATAGCAATTTTCAGGGTACGGTAGTTGTCTTGCACAGGTTCTCCGATACTTAAATGAAATATACTCACGAGTAGAACTTCCTTCACTGCTTGCCAATGAGACTGCATGATTCTGTAGTACTGGTGGAATACTGTTATTCTCCATATCCGCGAACTGTGGCGTTGGTGGATACTCTGGAACGTCGTAATCCGAATCGG</canonical>
            <polymorphic>TGCAGTTCTCCTTCTTCCAGCTCCCTTGGACACTGTCATCGGCACAATTGGCCCGGATGGTTCCTGAGACACCATATCCAATGTCAACGCTCCAGATGAGAATTGCGATGTGAATGTGCTTCGCTTCGCTGCCAACGCTGCGTCTTCGGGTCCCGATCTCTCGCTGGCTCGACGTTGACGCTTAGTCGGACGTTCGATTGACGTGTTGGTGTTGCTTCGTCTTCTGACCTCATCAGTCTCGAGTGGACCGGATTGTGGAACTTCGGCAAGGGTGAGGGGTCCAGAATGTTCGATGTTGTCGGCTGGTGGGAATGCAGGCATCGGAGCGGAACTGGTGTGAGGAGGGCTCAGAATTGGGTCTGCAAAAAAATTTTTCTTCAAAAAATGGATTTATTCGTAAATGTACGACTTGTATAGAGGTGTTGTTCGATTCATCAATTCAAATGCTAATGGGAATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATGCAWAAACCACTATACAAAAAAAAAGTACAAAGTTCCCACAACGACAACTACCGTAACCTATAACTTTTCGATTTTTTTCGAAACCACGACGTTTCAGAACCTGACATTTCAGAACCCGACGTTTCCGAACCCGATGTTCGGTGTGCAAAAACCACTATGCAAAAATGCAGAAAAGTTCTGAAATCTCGAGTTCTGAAACGTCGCGTTTCCAAAACGCTAGGTTTTGATATGTCGAGTACTGAAACGTCTTGGTTCCGAAACGTCCAGGAGCCGAAAACGCACAAGAATCGAGTTAAAAATTTAGAAATAGCAATTTTCAGGGTACGGTAGTTGTCTTGCACAGGTTCTCCGATACTTAAATGAAATATACTCACGAGTAGAACTTCCTTCACTGCTTGCCAATGAGACTGCATGATTCTGTAGTACTGGTGGAATACTGTTATTCTCCATATCCGCGAACTGTGGCGTTGGTGGATACTCTGGAACGTCGTAATCCGAATCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATAGAGGTGTTGTTCGATTCAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTGCATAGTGGTTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATAGAGGTGTTGTTCGATTCATCAATTCAAATGCTAATGGGAATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATGCAAAAACCACTATACAAAAAAAAAGTACAAAGTTCCCACAACGACAACTACCGTAACCTATAACTTTTCGATTTTTTTCGAAACCACGACGTTTCAGAACCTGACATTTCAGAACCCGACGTTTCCGAACCCGATGTTCGGTGTGCAAAAACCACTATGCAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TATAGAGGTGTTGTTCGATTCATCAATTCAAATGCTAATGGGAATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATGCAWAAACCACTATACAAAAAAAAAGTACAAAGTTCCCACAACGACAACTACCGTAACCTATAACTTTTCGATTTTTTTCGAAACCACGACGTTTCAGAACCTGACATTTCAGAACCCGACGTTTCCGAACCCGATGTTCGGTGTGCAAAAACCACTATGCAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26219</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>570579</contig_pos>
        <strand>+</strand>
        <context>TKSWWAAACC[A/G]STATACAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATGCAAAAACC</left_flank>
        <right_flank>CTATACAAAAAAAAAGTACAAAGTTCCCACAACGACAACTACCGTAACCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCCTTCTTCCAGCTCCCTTGGACACTGTCATCGGCACAATTGGCCCGGATGGTTCCTGAGACACCATATCCAATGTCAACGCTCCAGATGAGAATTGCGATGTGAATGTGCTTCGCTTCGCTGCCAACGCTGCGTCTTCGGGTCCCGATCTCTCGCTGGCTCGACGTTGACGCTTAGTCGGACGTTCGATTGACGTGTTGGTGTTGCTTCGTCTTCTGACCTCATCAGTCTCGAGTGGACCGGATTGTGGAACTTCGGCAAGGGTGAGGGGTCCAGAATGTTCGATGTTGTCGGCTGGTGGGAATGCAGGCATCGGAGCGGAACTGGTGTGAGGAGGGCTCAGAATTGGGTCTGCAAAAAAATTTTTCTTCAAAAAATGGATTTATTCGTAAATGTACGACTTGTATAGAGGTGTTGTTCGATTCATCAATTCAAATGCTAATGGGAATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATGCAAAAACCACTATACAAAAAAAAAGTACAAAGTTCCCACAACGACAACTACCGTAACCTATAACTTTTCGATTTTTTTCGAAACCACGACGTTTCAGAACCTGACATTTCAGAACCCGACGTTTCCGAACCCGATGTTCGGTGTGCAAAAACCACTATGCAAAAATGCAGAAAAGTTCTGAAATCTCGAGTTCTGAAACGTCGCGTTTCCAAAACGCTAGGTTTTGATATGTCGAGTACTGAAACGTCTTGGTTCCGAAACGTCCAGGAGCCGAAAACGCACAAGAATCGAGTTAAAAATTTAGAAATAGCAATTTTCAGGGTACGGTAGTTGTCTTGCACAGGTTCTCCGATACTTAAATGAAATATACTCACGAGTAGAACTTCCTTCACTGCTTGCCAATGAGACTGCATGATTCTGTAGTACTGGTGGAATACTGTTATTCTCCATATCCGCGAACTGTGGCGTTGGTGGATACTCTGGAACGTCGTAATCCGAATCGGGCGTGA</canonical>
            <polymorphic>TCTCCTTCTTCCAGCTCCCTTGGACACTGTCATCGGCACAATTGGCCCGGATGGTTCCTGAGACACCATATCCAATGTCAACGCTCCAGATGAGAATTGCGATGTGAATGTGCTTCGCTTCGCTGCCAACGCTGCGTCTTCGGGTCCCGATCTCTCGCTGGCTCGACGTTGACGCTTAGTCGGACGTTCGATTGACGTGTTGGTGTTGCTTCGTCTTCTGACCTCATCAGTCTCGAGTGGACCGGATTGTGGAACTTCGGCAAGGGTGAGGGGTCCAGAATGTTCGATGTTGTCGGCTGGTGGGAATGCAGGCATCGGAGCGGAACTGGTGTGAGGAGGGCTCAGAATTGGGTCTGCAAAAAAATTTTTCTTCAAAAAATGGATTTATTCGTAAATGTACGACTTGTATAGAGGTGTTGTTCGATTCATCAATTCAAATGCTAATGGGAATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATGCAAAAACCRCTATACAAAAAAAAAGTACAAAGTTCCCACAACGACAACTACCGTAACCTATAACTTTTCGATTTTTTTCGAAACCACGACGTTTCAGAACCTGACATTTCAGAACCCGACGTTTCCGAACCCGATGTTCGGTGTGCAAAAACCACTATGCAAAAATGCAGAAAAGTTCTGAAATCTCGAGTTCTGAAACGTCGCGTTTCCAAAACGCTAGGTTTTGATATGTCGAGTACTGAAACGTCTTGGTTCCGAAACGTCCAGGAGCCGAAAACGCACAAGAATCGAGTTAAAAATTTAGAAATAGCAATTTTCAGGGTACGGTAGTTGTCTTGCACAGGTTCTCCGATACTTAAATGAAATATACTCACGAGTAGAACTTCCTTCACTGCTTGCCAATGAGACTGCATGATTCTGTAGTACTGGTGGAATACTGTTATTCTCCATATCCGCGAACTGTGGCGTTGGTGGATACTCTGGAACGTCGTAATCCGAATCGGGCGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>127 87 84 83 59 57 48 41 40 35 34 34 33 33 29 29 27 26 18 17 12 12 9 9 6 6 2 2 1</canonical_bands>
                <polymorphic_bands>127 113 87 83 59 57 48 41 40 35 34 34 33 33 29 27 26 18 17 12 12 9 9 6 6 2 2 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATAGAGGTGTTGTTCGATTCAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTGCATAGTGGTTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATAGAGGTGTTGTTCGATTCATCAATTCAAATGCTAATGGGAATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATGCAAAAACCACTATACAAAAAAAAAGTACAAAGTTCCCACAACGACAACTACCGTAACCTATAACTTTTCGATTTTTTTCGAAACCACGACGTTTCAGAACCTGACATTTCAGAACCCGACGTTTCCGAACCCGATGTTCGGTGTGCAAAAACCACTATGCAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TATAGAGGTGTTGTTCGATTCATCAATTCAAATGCTAATGGGAATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATGCAAAAACCRCTATACAAAAAAAAAGTACAAAGTTCCCACAACGACAACTACCGTAACCTATAACTTTTCGATTTTTTTCGAAACCACGACGTTTCAGAACCTGACATTTCAGAACCCGACGTTTCCGAACCCGATGTTCGGTGTGCAAAAACCACTATGCAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26220</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>570580</contig_pos>
        <strand>+</strand>
        <context>KSWWAAACCR[C/G]TATACAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATGCAAAAACCA</left_flank>
        <right_flank>TATACAAAAAAAAAGTACAAAGTTCCCACAACGACAACTACCGTAACCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCTTCTTCCAGCTCCCTTGGACACTGTCATCGGCACAATTGGCCCGGATGGTTCCTGAGACACCATATCCAATGTCAACGCTCCAGATGAGAATTGCGATGTGAATGTGCTTCGCTTCGCTGCCAACGCTGCGTCTTCGGGTCCCGATCTCTCGCTGGCTCGACGTTGACGCTTAGTCGGACGTTCGATTGACGTGTTGGTGTTGCTTCGTCTTCTGACCTCATCAGTCTCGAGTGGACCGGATTGTGGAACTTCGGCAAGGGTGAGGGGTCCAGAATGTTCGATGTTGTCGGCTGGTGGGAATGCAGGCATCGGAGCGGAACTGGTGTGAGGAGGGCTCAGAATTGGGTCTGCAAAAAAATTTTTCTTCAAAAAATGGATTTATTCGTAAATGTACGACTTGTATAGAGGTGTTGTTCGATTCATCAATTCAAATGCTAATGGGAATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATGCAAAAACCACTATACAAAAAAAAAGTACAAAGTTCCCACAACGACAACTACCGTAACCTATAACTTTTCGATTTTTTTCGAAACCACGACGTTTCAGAACCTGACATTTCAGAACCCGACGTTTCCGAACCCGATGTTCGGTGTGCAAAAACCACTATGCAAAAATGCAGAAAAGTTCTGAAATCTCGAGTTCTGAAACGTCGCGTTTCCAAAACGCTAGGTTTTGATATGTCGAGTACTGAAACGTCTTGGTTCCGAAACGTCCAGGAGCCGAAAACGCACAAGAATCGAGTTAAAAATTTAGAAATAGCAATTTTCAGGGTACGGTAGTTGTCTTGCACAGGTTCTCCGATACTTAAATGAAATATACTCACGAGTAGAACTTCCTTCACTGCTTGCCAATGAGACTGCATGATTCTGTAGTACTGGTGGAATACTGTTATTCTCCATATCCGCGAACTGTGGCGTTGGTGGATACTCTGGAACGTCGTAATCCGAATCGGGCGTGAT</canonical>
            <polymorphic>CTCCTTCTTCCAGCTCCCTTGGACACTGTCATCGGCACAATTGGCCCGGATGGTTCCTGAGACACCATATCCAATGTCAACGCTCCAGATGAGAATTGCGATGTGAATGTGCTTCGCTTCGCTGCCAACGCTGCGTCTTCGGGTCCCGATCTCTCGCTGGCTCGACGTTGACGCTTAGTCGGACGTTCGATTGACGTGTTGGTGTTGCTTCGTCTTCTGACCTCATCAGTCTCGAGTGGACCGGATTGTGGAACTTCGGCAAGGGTGAGGGGTCCAGAATGTTCGATGTTGTCGGCTGGTGGGAATGCAGGCATCGGAGCGGAACTGGTGTGAGGAGGGCTCAGAATTGGGTCTGCAAAAAAATTTTTCTTCAAAAAATGGATTTATTCGTAAATGTACGACTTGTATAGAGGTGTTGTTCGATTCATCAATTCAAATGCTAATGGGAATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATGCAAAAACCASTATACAAAAAAAAAGTACAAAGTTCCCACAACGACAACTACCGTAACCTATAACTTTTCGATTTTTTTCGAAACCACGACGTTTCAGAACCTGACATTTCAGAACCCGACGTTTCCGAACCCGATGTTCGGTGTGCAAAAACCACTATGCAAAAATGCAGAAAAGTTCTGAAATCTCGAGTTCTGAAACGTCGCGTTTCCAAAACGCTAGGTTTTGATATGTCGAGTACTGAAACGTCTTGGTTCCGAAACGTCCAGGAGCCGAAAACGCACAAGAATCGAGTTAAAAATTTAGAAATAGCAATTTTCAGGGTACGGTAGTTGTCTTGCACAGGTTCTCCGATACTTAAATGAAATATACTCACGAGTAGAACTTCCTTCACTGCTTGCCAATGAGACTGCATGATTCTGTAGTACTGGTGGAATACTGTTATTCTCCATATCCGCGAACTGTGGCGTTGGTGGATACTCTGGAACGTCGTAATCCGAATCGGGCGTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>127 87 84 83 59 57 48 41 40 35 34 34 33 33 29 29 27 25 18 17 12 12 9 9 6 6 2 2 2</canonical_bands>
                <polymorphic_bands>127 113 87 83 59 57 48 41 40 35 34 34 33 33 29 27 25 18 17 12 12 9 9 6 6 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATAGAGGTGTTGTTCGATTCAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTGCATAGTGGTTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATAGAGGTGTTGTTCGATTCATCAATTCAAATGCTAATGGGAATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATGCAAAAACCACTATACAAAAAAAAAGTACAAAGTTCCCACAACGACAACTACCGTAACCTATAACTTTTCGATTTTTTTCGAAACCACGACGTTTCAGAACCTGACATTTCAGAACCCGACGTTTCCGAACCCGATGTTCGGTGTGCAAAAACCACTATGCAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TATAGAGGTGTTGTTCGATTCATCAATTCAAATGCTAATGGGAATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATGCAAAAACCASTATACAAAAAAAAAGTACAAAGTTCCCACAACGACAACTACCGTAACCTATAACTTTTCGATTTTTTTCGAAACCACGACGTTTCAGAACCTGACATTTCAGAACCCGACGTTTCCGAACCCGATGTTCGGTGTGCAAAAACCACTATGCAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26221</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>570603</contig_pos>
        <strand></strand>
        <context>AAGTAcaaag[T/C]tcccacaacg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGAAAATGCCAACCCATGCAAAAACCACTATACAAAAAAAAAGTACAAAG</left_flank>
        <right_flank>TCCCACAACGACAACTACCGTAACCTATAACTTTTCGATTTTTTTCGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTGTCATCGGCACAATTGGCCCGGATGGTTCCTGAGACACCATATCCAATGTCAACGCTCCAGATGAGAATTGCGATGTGAATGTGCTTCGCTTCGCTGCCAACGCTGCGTCTTCGGGTCCCGATCTCTCGCTGGCTCGACGTTGACGCTTAGTCGGACGTTCGATTGACGTGTTGGTGTTGCTTCGTCTTCTGACCTCATCAGTCTCGAGTGGACCGGATTGTGGAACTTCGGCAAGGGTGAGGGGTCCAGAATGTTCGATGTTGTCGGCTGGTGGGAATGCAGGCATCGGAGCGGAACTGGTGTGAGGAGGGCTCAGAATTGGGTCTGCAAAAAAATTTTTCTTCAAAAAATGGATTTATTCGTAAATGTACGACTTGTATAGAGGTGTTGTTCGATTCATCAATTCAAATGCTAATGGGAATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATGCAAAAACCACTATACAAAAAAAAAGTACAAAGTTCCCACAACGACAACTACCGTAACCTATAACTTTTCGATTTTTTTCGAAACCACGACGTTTCAGAACCTGACATTTCAGAACCCGACGTTTCCGAACCCGATGTTCGGTGTGCAAAAACCACTATGCAAAAATGCAGAAAAGTTCTGAAATCTCGAGTTCTGAAACGTCGCGTTTCCAAAACGCTAGGTTTTGATATGTCGAGTACTGAAACGTCTTGGTTCCGAAACGTCCAGGAGCCGAAAACGCACAAGAATCGAGTTAAAAATTTAGAAATAGCAATTTTCAGGGTACGGTAGTTGTCTTGCACAGGTTCTCCGATACTTAAATGAAATATACTCACGAGTAGAACTTCCTTCACTGCTTGCCAATGAGACTGCATGATTCTGTAGTACTGGTGGAATACTGTTATTCTCCATATCCGCGAACTGTGGCGTTGGTGGATACTCTGGAACGTCGTAATCCGAATCGGGCGTGATGGGTTTCGCAGCTTCTGGCTCCG</canonical>
            <polymorphic>CACTGTCATCGGCACAATTGGCCCGGATGGTTCCTGAGACACCATATCCAATGTCAACGCTCCAGATGAGAATTGCGATGTGAATGTGCTTCGCTTCGCTGCCAACGCTGCGTCTTCGGGTCCCGATCTCTCGCTGGCTCGACGTTGACGCTTAGTCGGACGTTCGATTGACGTGTTGGTGTTGCTTCGTCTTCTGACCTCATCAGTCTCGAGTGGACCGGATTGTGGAACTTCGGCAAGGGTGAGGGGTCCAGAATGTTCGATGTTGTCGGCTGGTGGGAATGCAGGCATCGGAGCGGAACTGGTGTGAGGAGGGCTCAGAATTGGGTCTGCAAAAAAATTTTTCTTCAAAAAATGGATTTATTCGTAAATGTACGACTTGTATAGAGGTGTTGTTCGATTCATCAATTCAAATGCTAATGGGAATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATGCAAAAACCACTATACAAAAAAAAAGTACAAAGYTCCCACAACGACAACTACCGTAACCTATAACTTTTCGATTTTTTTCGAAACCACGACGTTTCAGAACCTGACATTTCAGAACCCGACGTTTCCGAACCCGATGTTCGGTGTGCAAAAACCACTATGCAAAAATGCAGAAAAGTTCTGAAATCTCGAGTTCTGAAACGTCGCGTTTCCAAAACGCTAGGTTTTGATATGTCGAGTACTGAAACGTCTTGGTTCCGAAACGTCCAGGAGCCGAAAACGCACAAGAATCGAGTTAAAAATTTAGAAATAGCAATTTTCAGGGTACGGTAGTTGTCTTGCACAGGTTCTCCGATACTTAAATGAAATATACTCACGAGTAGAACTTCCTTCACTGCTTGCCAATGAGACTGCATGATTCTGTAGTACTGGTGGAATACTGTTATTCTCCATATCCGCGAACTGTGGCGTTGGTGGATACTCTGGAACGTCGTAATCCGAATCGGGCGTGATGGGTTTCGCAGCTTCTGGCTCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATAGAGGTGTTGTTCGATTCAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTGCATAGTGGTTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATAGAGGTGTTGTTCGATTCATCAATTCAAATGCTAATGGGAATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATGCAAAAACCACTATACAAAAAAAAAGTACAAAGTTCCCACAACGACAACTACCGTAACCTATAACTTTTCGATTTTTTTCGAAACCACGACGTTTCAGAACCTGACATTTCAGAACCCGACGTTTCCGAACCCGATGTTCGGTGTGCAAAAACCACTATGCAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TATAGAGGTGTTGTTCGATTCATCAATTCAAATGCTAATGGGAATTTTTTCTTCGATGTAAATGTCATGAAAATGCCAACCCATGCAAAAACCACTATACAAAAAAAAAGTACAAAGYTCCCACAACGACAACTACCGTAACCTATAACTTTTCGATTTTTTTCGAAACCACGACGTTTCAGAACCTGACATTTCAGAACCCGACGTTTCCGAACCCGATGTTCGGTGTGCAAAAACCACTATGCAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26222</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>621102</contig_pos>
        <strand>+</strand>
        <context>ATCAGATAGC[G/T]TGCTTAACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGTAGATGTGACAAAATAAAATATCGCGAAACCATAAAAAATCAGATAGC</left_flank>
        <right_flank>TGCTTAACAACTGATAAAAATGCGCTATTAATTCTAAGAAAAGGAAATTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAAAAATCGTTCTAAGAAACTTGAAAATTTTTGAAACATAAGACACTGTAAAACTTAAAATAGAAGGGCTCCTAACTTTATCGCAAATTATCTCGGTTCTTACAAAAGATTGCAAAAAATGGTTTACTGGCAAAATATTTTTGATATTATACTTAACATTTCGTCAGTTGACCACTTTTTGATATTTTTCACAGGAACTAAAATAAATTGACTCAAAGTTTAGAGGTCGGCAGCCGACCGCGTAGCTCATCCGGCAAGCATCGACTGTTCAACTTTGAGGTCATTGTACCTCGTTTTCTGTGAAAGATATAAAAAAGTGGTCAACTGATAAAATTTTCATCATATTATCAAAAACATATTATCAGTAGACTACTTCTTGATATCTCTTATAGGAGCCGAGATAAGTGAGCTCAAACATGACAGTATGGCCGCTTTTACAGGTTCTACGGTAGATGTGACAAAATAAAATATCGCGAAACCATAAAAAATCAGATAGCATGCTTAACAACTGATAAAAATGCGCTATTAATTCTAAGAAAAGGAAATTGTCTCAAAAATCAGAAAAGCATCAGAATCTCCATAAAAAAATTTTCTTGAAAATTTTGACAAGTTTAATGGTTTGAGGTTGCCTAAAAGAAAAATGATAAACAAATAAGTAAACTGATCTCAGCGAAAAACTCCGCAATTTTTAACGGAACAGTCTAGGAACTATAAAAAATTGAAGATTTTGAGATATATCAGTTTTCCTGAAGACAAGCTTGTCTTACTGAGTTACTGAAAACTAGCAAAGCAAAAAATGGAACAGTCATTTAAAAAACTGATAAGGCCTTAAACCTCCACCTACACTGAATTTCTGAAAGAAAAAACATCTGGAAATGATAAGCACCAAAAATGACTCATATTCCATGCAAACTCGCTTCGATTGAACTCTTCTTCTTTGCCAGCTGGCTTTAGCAGCCCTTGACCCTTTTATTCCTCTTTTTTTTATATTAATGTAT</canonical>
            <polymorphic>CAAAAAAATCGTTCTAAGAAACTTGAAAATTTTTGAAACATAAGACACTGTAAAACTTAAAATAGAAGGGCTCCTAACTTTATCGCAAATTATCTCGGTTCTTACAAAAGATTGCAAAAAATGGTTTACTGGCAAAATATTTTTGATATTATACTTAACATTTCGTCAGTTGACCACTTTTTGATATTTTTCACAGGAACTAAAATAAATTGACTCAAAGTTTAGAGGTCGGCAGCCGACCGCGTAGCTCATCCGGCAAGCATCGACTGTTCAACTTTGAGGTCATTGTACCTCGTTTTCTGTGAAAGATATAAAAAAGTGGTCAACTGATAAAATTTTCATCATATTATCAAAAACATATTATCAGTAGACTACTTCTTGATATCTCTTATAGGAGCCGAGATAAGTGAGCTCAAACATGACAGTATGGCCGCTTTTACAGGTTCTACGGTAGATGTGACAAAATAAAATATCGCGAAACCATAAAAAATCAGATAGCKTGCTTAACAACTGATAAAAATGCGCTATTAATTCTAAGAAAAGGAAATTGTCTCAAAAATCAGAAAAGCATCAGAATCTCCATAAAAAAATTTTCTTGAAAATTTTGACAAGTTTAATGGTTTGAGGTTGCCTAAAAGAAAAATGATAAACAAATAAGTAAACTGATCTCAGCGAAAAACTCCGCAATTTTTAACGGAACAGTCTAGGAACTATAAAAAATTGAAGATTTTGAGATATATCAGTTTTCCTGAAGACAAGCTTGTCTTACTGAGTTACTGAAAACTAGCAAAGCAAAAAATGGAACAGTCATTTAAAAAACTGATAAGGCCTTAAACCTCCACCTACACTGAATTTCTGAAAGAAAAAACATCTGGAAATGATAAGCACCAAAAATGACTCATATTCCATGCAAACTCGCTTCGATTGAACTCTTCTTCTTTGCCAGCTGGCTTTAGCAGCCCTTGACCCTTTTATTCCTCTTTTTTTTATATTAATGTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCATGC</site>
                <isoschizomers>
                    <enzyme>BbuI</enzyme>
                    <enzyme>PaeI</enzyme>
                    <enzyme>SpaHI</enzyme>
                    <enzyme>SphI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>418 408 93 81</canonical_bands>
                <polymorphic_bands>489 418 93</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCGTTCTAAGAAACTTGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GATTTTTGAGACAATTTCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>555</pcr_amplicon_size>
		<canonical_amplicon>AATCGTTCTAAGAAACTTGAAAATTTTTGAAACATAAGACACTGTAAAACTTAAAATAGAAGGGCTCCTAACTTTATCGCAAATTATCTCGGTTCTTACAAAAGATTGCAAAAAATGGTTTACTGGCAAAATATTTTTGATATTATACTTAACATTTCGTCAGTTGACCACTTTTTGATATTTTTCACAGGAACTAAAATAAATTGACTCAAAGTTTAGAGGTCGGCAGCCGACCGCGTAGCTCATCCGGCAAGCATCGACTGTTCAACTTTGAGGTCATTGTACCTCGTTTTCTGTGAAAGATATAAAAAAGTGGTCAACTGATAAAATTTTCATCATATTATCAAAAACATATTATCAGTAGACTACTTCTTGATATCTCTTATAGGAGCCGAGATAAGTGAGCTCAAACATGACAGTATGGCCGCTTTTACAGGTTCTACGGTAGATGTGACAAAATAAAATATCGCGAAACCATAAAAAATCAGATAGCATGCTTAACAACTGATAAAAATGCGCTATTAATTCTAAGAAAAGGAAATTGTCTCAAAAATC</canonical_amplicon>
		<polymorphic_amplicon>AATCGTTCTAAGAAACTTGAAAATTTTTGAAACATAAGACACTGTAAAACTTAAAATAGAAGGGCTCCTAACTTTATCGCAAATTATCTCGGTTCTTACAAAAGATTGCAAAAAATGGTTTACTGGCAAAATATTTTTGATATTATACTTAACATTTCGTCAGTTGACCACTTTTTGATATTTTTCACAGGAACTAAAATAAATTGACTCAAAGTTTAGAGGTCGGCAGCCGACCGCGTAGCTCATCCGGCAAGCATCGACTGTTCAACTTTGAGGTCATTGTACCTCGTTTTCTGTGAAAGATATAAAAAAGTGGTCAACTGATAAAATTTTCATCATATTATCAAAAACATATTATCAGTAGACTACTTCTTGATATCTCTTATAGGAGCCGAGATAAGTGAGCTCAAACATGACAGTATGGCCGCTTTTACAGGTTCTACGGTAGATGTGACAAAATAAAATATCGCGAAACCATAAAAAATCAGATAGCKTGCTTAACAACTGATAAAAATGCGCTATTAATTCTAAGAAAAGGAAATTGTCTCAAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26223</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>621327</contig_pos>
        <strand>+</strand>
        <context>AAAAAATTGA[A/G]GATTTTGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAACTCCGCAATTTTTAACGGAACAGTCTAGGAACTATAAAAAATTGA</left_flank>
        <right_flank>GATTTTGAGATATATCAGTTTTCCTGAAGACAAGCTTGTCTTACTGAGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTCGGCAGCCGACCGCGTAGCTCATCCGGCAAGCATCGACTGTTCAACTTTGAGGTCATTGTACCTCGTTTTCTGTGAAAGATATAAAAAAGTGGTCAACTGATAAAATTTTCATCATATTATCAAAAACATATTATCAGTAGACTACTTCTTGATATCTCTTATAGGAGCCGAGATAAGTGAGCTCAAACATGACAGTATGGCCGCTTTTACAGGTTCTACGGTAGATGTGACAAAATAAAATATCGCGAAACCATAAAAAATCAGATAGCATGCTTAACAACTGATAAAAATGCGCTATTAATTCTAAGAAAAGGAAATTGTCTCAAAAATCAGAAAAGCATCAGAATCTCCATAAAAAAATTTTCTTGAAAATTTTGACAAGTTTAATGGTTTGAGGTTGCCTAAAAGAAAAATGATAAACAAATAAGTAAACTGATCTCAGCGAAAAACTCCGCAATTTTTAACGGAACAGTCTAGGAACTATAAAAAATTGAAGATTTTGAGATATATCAGTTTTCCTGAAGACAAGCTTGTCTTACTGAGTTACTGAAAACTAGCAAAGCAAAAAATGGAACAGTCATTTAAAAAACTGATAAGGCCTTAAACCTCCACCTACACTGAATTTCTGAAAGAAAAAACATCTGGAAATGATAAGCACCAAAAATGACTCATATTCCATGCAAACTCGCTTCGATTGAACTCTTCTTCTTTGCCAGCTGGCTTTAGCAGCCCTTGACCCTTTTATTCCTCTTTTTTTTATATTAATGTATTCATCGAGGTGTCTCTATTCATAATCATCATATGAAGATGAAGAGGTGGAGGAGGAGCGCGGACACAAAGCGAAACGGGCGGTACACGAACAAGTGACCTTACTGTCAAACAGTTCAAAGCGGTTTTTTGTTGTTCATGGAATATGATCTGGCACGCAAACGGCGCTCTAATGATAACCTGAATAGCGTACGACCTCTCGGAGCCTTCGAAATGAGGGTCAAATG</canonical>
            <polymorphic>AGGTCGGCAGCCGACCGCGTAGCTCATCCGGCAAGCATCGACTGTTCAACTTTGAGGTCATTGTACCTCGTTTTCTGTGAAAGATATAAAAAAGTGGTCAACTGATAAAATTTTCATCATATTATCAAAAACATATTATCAGTAGACTACTTCTTGATATCTCTTATAGGAGCCGAGATAAGTGAGCTCAAACATGACAGTATGGCCGCTTTTACAGGTTCTACGGTAGATGTGACAAAATAAAATATCGCGAAACCATAAAAAATCAGATAGCATGCTTAACAACTGATAAAAATGCGCTATTAATTCTAAGAAAAGGAAATTGTCTCAAAAATCAGAAAAGCATCAGAATCTCCATAAAAAAATTTTCTTGAAAATTTTGACAAGTTTAATGGTTTGAGGTTGCCTAAAAGAAAAATGATAAACAAATAAGTAAACTGATCTCAGCGAAAAACTCCGCAATTTTTAACGGAACAGTCTAGGAACTATAAAAAATTGARGATTTTGAGATATATCAGTTTTCCTGAAGACAAGCTTGTCTTACTGAGTTACTGAAAACTAGCAAAGCAAAAAATGGAACAGTCATTTAAAAAACTGATAAGGCCTTAAACCTCCACCTACACTGAATTTCTGAAAGAAAAAACATCTGGAAATGATAAGCACCAAAAATGACTCATATTCCATGCAAACTCGCTTCGATTGAACTCTTCTTCTTTGCCAGCTGGCTTTAGCAGCCCTTGACCCTTTTATTCCTCTTTTTTTTATATTAATGTATTCATCGAGGTGTCTCTATTCATAATCATCATATGAAGATGAAGAGGTGGAGGAGGAGCGCGGACACAAAGCGAAACGGGCGGTACACGAACAAGTGACCTTACTGTCAAACAGTTCAAAGCGGTTTTTTGTTGTTCATGGAATATGATCTGGCACGCAAACGGCGCTCTAATGATAACCTGAATAGCGTACGACCTCTCGGAGCCTTCGAAATGAGGGTCAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGACAAGTTTAATGGTTTG</pcr_primer_p1>
		<pcr_primer_p2>TCAGTGTAGGTGGAGGTTTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGACAAGTTTAATGGTTTGAGGTTGCCTAAAAGAAAAATGATAAACAAATAAGTAAACTGATCTCAGCGAAAAACTCCGCAATTTTTAACGGAACAGTCTAGGAACTATAAAAAATTGAAGATTTTGAGATATATCAGTTTTCCTGAAGACAAGCTTGTCTTACTGAGTTACTGAAAACTAGCAAAGCAAAAAATGGAACAGTCATTTAAAAAACTGATAAGGCCTTAAACCTCCACCTACACTGA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGACAAGTTTAATGGTTTGAGGTTGCCTAAAAGAAAAATGATAAACAAATAAGTAAACTGATCTCAGCGAAAAACTCCGCAATTTTTAACGGAACAGTCTAGGAACTATAAAAAATTGARGATTTTGAGATATATCAGTTTTCCTGAAGACAAGCTTGTCTTACTGAGTTACTGAAAACTAGCAAAGCAAAAAATGGAACAGTCATTTAAAAAACTGATAAGGCCTTAAACCTCCACCTACACTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26224</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>621459</contig_pos>
        <strand>+</strand>
        <context>ACTGAATTTC[G/T]RAAAGAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTCATTTAAAAAACTGATAAGGCCTTAAACCTCCACCTACACTGAATTTC</left_flank>
        <right_flank>GAAAGAAAAAACATCTGGAAATGATAAGCACCAAAAATGACTCATATTCC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATTATCAGTAGACTACTTCTTGATATCTCTTATAGGAGCCGAGATAAGTGAGCTCAAACATGACAGTATGGCCGCTTTTACAGGTTCTACGGTAGATGTGACAAAATAAAATATCGCGAAACCATAAAAAATCAGATAGCATGCTTAACAACTGATAAAAATGCGCTATTAATTCTAAGAAAAGGAAATTGTCTCAAAAATCAGAAAAGCATCAGAATCTCCATAAAAAAATTTTCTTGAAAATTTTGACAAGTTTAATGGTTTGAGGTTGCCTAAAAGAAAAATGATAAACAAATAAGTAAACTGATCTCAGCGAAAAACTCCGCAATTTTTAACGGAACAGTCTAGGAACTATAAAAAATTGAAGATTTTGAGATATATCAGTTTTCCTGAAGACAAGCTTGTCTTACTGAGTTACTGAAAACTAGCAAAGCAAAAAATGGAACAGTCATTTAAAAAACTGATAAGGCCTTAAACCTCCACCTACACTGAATTTCTGAAAGAAAAAACATCTGGAAATGATAAGCACCAAAAATGACTCATATTCCATGCAAACTCGCTTCGATTGAACTCTTCTTCTTTGCCAGCTGGCTTTAGCAGCCCTTGACCCTTTTATTCCTCTTTTTTTTATATTAATGTATTCATCGAGGTGTCTCTATTCATAATCATCATATGAAGATGAAGAGGTGGAGGAGGAGCGCGGACACAAAGCGAAACGGGCGGTACACGAACAAGTGACCTTACTGTCAAACAGTTCAAAGCGGTTTTTTGTTGTTCATGGAATATGATCTGGCACGCAAACGGCGCTCTAATGATAACCTGAATAGCGTACGACCTCTCGGAGCCTTCGAAATGAGGGTCAAATGGCTGGAGGGGAAATGGGCGGTACGGTCTCTCTCGAGTGATTCATGATCGGCTTGGCGCCGCGCCAACACCAATTATGGACTTTTGGGGAGGACAACAGATGGTAGAAGAATAACCATCTGGGATTAAGCACG</canonical>
            <polymorphic>ATATTATCAGTAGACTACTTCTTGATATCTCTTATAGGAGCCGAGATAAGTGAGCTCAAACATGACAGTATGGCCGCTTTTACAGGTTCTACGGTAGATGTGACAAAATAAAATATCGCGAAACCATAAAAAATCAGATAGCATGCTTAACAACTGATAAAAATGCGCTATTAATTCTAAGAAAAGGAAATTGTCTCAAAAATCAGAAAAGCATCAGAATCTCCATAAAAAAATTTTCTTGAAAATTTTGACAAGTTTAATGGTTTGAGGTTGCCTAAAAGAAAAATGATAAACAAATAAGTAAACTGATCTCAGCGAAAAACTCCGCAATTTTTAACGGAACAGTCTAGGAACTATAAAAAATTGAAGATTTTGAGATATATCAGTTTTCCTGAAGACAAGCTTGTCTTACTGAGTTACTGAAAACTAGCAAAGCAAAAAATGGAACAGTCATTTAAAAAACTGATAAGGCCTTAAACCTCCACCTACACTGAATTTCKGAAAGAAAAAACATCTGGAAATGATAAGCACCAAAAATGACTCATATTCCATGCAAACTCGCTTCGATTGAACTCTTCTTCTTTGCCAGCTGGCTTTAGCAGCCCTTGACCCTTTTATTCCTCTTTTTTTTATATTAATGTATTCATCGAGGTGTCTCTATTCATAATCATCATATGAAGATGAAGAGGTGGAGGAGGAGCGCGGACACAAAGCGAAACGGGCGGTACACGAACAAGTGACCTTACTGTCAAACAGTTCAAAGCGGTTTTTTGTTGTTCATGGAATATGATCTGGCACGCAAACGGCGCTCTAATGATAACCTGAATAGCGTACGACCTCTCGGAGCCTTCGAAATGAGGGTCAAATGGCTGGAGGGGAAATGGGCGGTACGGTCTCTCTCGAGTGATTCATGATCGGCTTGGCGCCGCGCCAACACCAATTATGGACTTTTGGGGAGGACAACAGATGGTAGAAGAATAACCATCTGGGATTAAGCACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAGTTACTGAAAACTAGCAAAG</pcr_primer_p1>
		<pcr_primer_p2>GAATAGAGACACCTCGATGAATA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTGAGTTACTGAAAACTAGCAAAGCAAAAAATGGAACAGTCATTTAAAAAACTGATAAGGCCTTAAACCTCCACCTACACTGAATTTCTGAAAGAAAAAACATCTGGAAATGATAAGCACCAAAAATGACTCATATTCCATGCAAACTCGCTTCGATTGAACTCTTCTTCTTTGCCAGCTGGCTTTAGCAGCCCTTGACCCTTTTATTCCTCTTTTTTTTATATTAATGTATTCATCGAGGTGTCTCTATTC</canonical_amplicon>
		<polymorphic_amplicon>CTGAGTTACTGAAAACTAGCAAAGCAAAAAATGGAACAGTCATTTAAAAAACTGATAAGGCCTTAAACCTCCACCTACACTGAATTTCKGAAAGAAAAAACATCTGGAAATGATAAGCACCAAAAATGACTCATATTCCATGCAAACTCGCTTCGATTGAACTCTTCTTCTTTGCCAGCTGGCTTTAGCAGCCCTTGACCCTTTTATTCCTCTTTTTTTTATATTAATGTATTCATCGAGGTGTCTCTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26225</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>621460</contig_pos>
        <strand>+</strand>
        <context>CTGAATTTCK[A/G]AAAGAAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATTTAAAAAACTGATAAGGCCTTAAACCTCCACCTACACTGAATTTCT</left_flank>
        <right_flank>AAAGAAAAAACATCTGGAAATGATAAGCACCAAAAATGACTCATATTCCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTATCAGTAGACTACTTCTTGATATCTCTTATAGGAGCCGAGATAAGTGAGCTCAAACATGACAGTATGGCCGCTTTTACAGGTTCTACGGTAGATGTGACAAAATAAAATATCGCGAAACCATAAAAAATCAGATAGCATGCTTAACAACTGATAAAAATGCGCTATTAATTCTAAGAAAAGGAAATTGTCTCAAAAATCAGAAAAGCATCAGAATCTCCATAAAAAAATTTTCTTGAAAATTTTGACAAGTTTAATGGTTTGAGGTTGCCTAAAAGAAAAATGATAAACAAATAAGTAAACTGATCTCAGCGAAAAACTCCGCAATTTTTAACGGAACAGTCTAGGAACTATAAAAAATTGAAGATTTTGAGATATATCAGTTTTCCTGAAGACAAGCTTGTCTTACTGAGTTACTGAAAACTAGCAAAGCAAAAAATGGAACAGTCATTTAAAAAACTGATAAGGCCTTAAACCTCCACCTACACTGAATTTCTGAAAGAAAAAACATCTGGAAATGATAAGCACCAAAAATGACTCATATTCCATGCAAACTCGCTTCGATTGAACTCTTCTTCTTTGCCAGCTGGCTTTAGCAGCCCTTGACCCTTTTATTCCTCTTTTTTTTATATTAATGTATTCATCGAGGTGTCTCTATTCATAATCATCATATGAAGATGAAGAGGTGGAGGAGGAGCGCGGACACAAAGCGAAACGGGCGGTACACGAACAAGTGACCTTACTGTCAAACAGTTCAAAGCGGTTTTTTGTTGTTCATGGAATATGATCTGGCACGCAAACGGCGCTCTAATGATAACCTGAATAGCGTACGACCTCTCGGAGCCTTCGAAATGAGGGTCAAATGGCTGGAGGGGAAATGGGCGGTACGGTCTCTCTCGAGTGATTCATGATCGGCTTGGCGCCGCGCCAACACCAATTATGGACTTTTGGGGAGGACAACAGATGGTAGAAGAATAACCATCTGGGATTAAGCACGA</canonical>
            <polymorphic>TATTATCAGTAGACTACTTCTTGATATCTCTTATAGGAGCCGAGATAAGTGAGCTCAAACATGACAGTATGGCCGCTTTTACAGGTTCTACGGTAGATGTGACAAAATAAAATATCGCGAAACCATAAAAAATCAGATAGCATGCTTAACAACTGATAAAAATGCGCTATTAATTCTAAGAAAAGGAAATTGTCTCAAAAATCAGAAAAGCATCAGAATCTCCATAAAAAAATTTTCTTGAAAATTTTGACAAGTTTAATGGTTTGAGGTTGCCTAAAAGAAAAATGATAAACAAATAAGTAAACTGATCTCAGCGAAAAACTCCGCAATTTTTAACGGAACAGTCTAGGAACTATAAAAAATTGAAGATTTTGAGATATATCAGTTTTCCTGAAGACAAGCTTGTCTTACTGAGTTACTGAAAACTAGCAAAGCAAAAAATGGAACAGTCATTTAAAAAACTGATAAGGCCTTAAACCTCCACCTACACTGAATTTCTRAAAGAAAAAACATCTGGAAATGATAAGCACCAAAAATGACTCATATTCCATGCAAACTCGCTTCGATTGAACTCTTCTTCTTTGCCAGCTGGCTTTAGCAGCCCTTGACCCTTTTATTCCTCTTTTTTTTATATTAATGTATTCATCGAGGTGTCTCTATTCATAATCATCATATGAAGATGAAGAGGTGGAGGAGGAGCGCGGACACAAAGCGAAACGGGCGGTACACGAACAAGTGACCTTACTGTCAAACAGTTCAAAGCGGTTTTTTGTTGTTCATGGAATATGATCTGGCACGCAAACGGCGCTCTAATGATAACCTGAATAGCGTACGACCTCTCGGAGCCTTCGAAATGAGGGTCAAATGGCTGGAGGGGAAATGGGCGGTACGGTCTCTCTCGAGTGATTCATGATCGGCTTGGCGCCGCGCCAACACCAATTATGGACTTTTGGGGAGGACAACAGATGGTAGAAGAATAACCATCTGGGATTAAGCACGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>343 284 158 135 69 11</canonical_bands>
                <polymorphic_bands>627 158 135 69 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAGTTACTGAAAACTAGCAAAG</pcr_primer_p1>
		<pcr_primer_p2>GAATAGAGACACCTCGATGAATA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTGAGTTACTGAAAACTAGCAAAGCAAAAAATGGAACAGTCATTTAAAAAACTGATAAGGCCTTAAACCTCCACCTACACTGAATTTCTGAAAGAAAAAACATCTGGAAATGATAAGCACCAAAAATGACTCATATTCCATGCAAACTCGCTTCGATTGAACTCTTCTTCTTTGCCAGCTGGCTTTAGCAGCCCTTGACCCTTTTATTCCTCTTTTTTTTATATTAATGTATTCATCGAGGTGTCTCTATTC</canonical_amplicon>
		<polymorphic_amplicon>CTGAGTTACTGAAAACTAGCAAAGCAAAAAATGGAACAGTCATTTAAAAAACTGATAAGGCCTTAAACCTCCACCTACACTGAATTTCTRAAAGAAAAAACATCTGGAAATGATAAGCACCAAAAATGACTCATATTCCATGCAAACTCGCTTCGATTGAACTCTTCTTCTTTGCCAGCTGGCTTTAGCAGCCCTTGACCCTTTTATTCCTCTTTTTTTTATATTAATGTATTCATCGAGGTGTCTCTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26226</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>621541</contig_pos>
        <strand>+</strand>
        <context>ACTCTTCTTC[G/T]TTGCCAGCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAAAAATGACTCATATTCCATGCAAACTCGCTTCGATTGAACTCTTCTTC</left_flank>
        <right_flank>TTGCCAGCTGGCTTTAGCAGCCCTTGACCCTTTTATTCCTCTTTTTTTTA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGGTTCTACGGTAGATGTGACAAAATAAAATATCGCGAAACCATAAAAAATCAGATAGCATGCTTAACAACTGATAAAAATGCGCTATTAATTCTAAGAAAAGGAAATTGTCTCAAAAATCAGAAAAGCATCAGAATCTCCATAAAAAAATTTTCTTGAAAATTTTGACAAGTTTAATGGTTTGAGGTTGCCTAAAAGAAAAATGATAAACAAATAAGTAAACTGATCTCAGCGAAAAACTCCGCAATTTTTAACGGAACAGTCTAGGAACTATAAAAAATTGAAGATTTTGAGATATATCAGTTTTCCTGAAGACAAGCTTGTCTTACTGAGTTACTGAAAACTAGCAAAGCAAAAAATGGAACAGTCATTTAAAAAACTGATAAGGCCTTAAACCTCCACCTACACTGAATTTCTGAAAGAAAAAACATCTGGAAATGATAAGCACCAAAAATGACTCATATTCCATGCAAACTCGCTTCGATTGAACTCTTCTTCTTTGCCAGCTGGCTTTAGCAGCCCTTGACCCTTTTATTCCTCTTTTTTTTATATTAATGTATTCATCGAGGTGTCTCTATTCATAATCATCATATGAAGATGAAGAGGTGGAGGAGGAGCGCGGACACAAAGCGAAACGGGCGGTACACGAACAAGTGACCTTACTGTCAAACAGTTCAAAGCGGTTTTTTGTTGTTCATGGAATATGATCTGGCACGCAAACGGCGCTCTAATGATAACCTGAATAGCGTACGACCTCTCGGAGCCTTCGAAATGAGGGTCAAATGGCTGGAGGGGAAATGGGCGGTACGGTCTCTCTCGAGTGATTCATGATCGGCTTGGCGCCGCGCCAACACCAATTATGGACTTTTGGGGAGGACAACAGATGGTAGAAGAATAACCATCTGGGATTAAGCACGAAAGAATGATGACAATGTCACATGGTCATTTTGCAGAATTCTGTATTGAAGACGATTAGAAGTTTCGAAAACCATGATGATG</canonical>
            <polymorphic>CAGGTTCTACGGTAGATGTGACAAAATAAAATATCGCGAAACCATAAAAAATCAGATAGCATGCTTAACAACTGATAAAAATGCGCTATTAATTCTAAGAAAAGGAAATTGTCTCAAAAATCAGAAAAGCATCAGAATCTCCATAAAAAAATTTTCTTGAAAATTTTGACAAGTTTAATGGTTTGAGGTTGCCTAAAAGAAAAATGATAAACAAATAAGTAAACTGATCTCAGCGAAAAACTCCGCAATTTTTAACGGAACAGTCTAGGAACTATAAAAAATTGAAGATTTTGAGATATATCAGTTTTCCTGAAGACAAGCTTGTCTTACTGAGTTACTGAAAACTAGCAAAGCAAAAAATGGAACAGTCATTTAAAAAACTGATAAGGCCTTAAACCTCCACCTACACTGAATTTCTGAAAGAAAAAACATCTGGAAATGATAAGCACCAAAAATGACTCATATTCCATGCAAACTCGCTTCGATTGAACTCTTCTTCKTTGCCAGCTGGCTTTAGCAGCCCTTGACCCTTTTATTCCTCTTTTTTTTATATTAATGTATTCATCGAGGTGTCTCTATTCATAATCATCATATGAAGATGAAGAGGTGGAGGAGGAGCGCGGACACAAAGCGAAACGGGCGGTACACGAACAAGTGACCTTACTGTCAAACAGTTCAAAGCGGTTTTTTGTTGTTCATGGAATATGATCTGGCACGCAAACGGCGCTCTAATGATAACCTGAATAGCGTACGACCTCTCGGAGCCTTCGAAATGAGGGTCAAATGGCTGGAGGGGAAATGGGCGGTACGGTCTCTCTCGAGTGATTCATGATCGGCTTGGCGCCGCGCCAACACCAATTATGGACTTTTGGGGAGGACAACAGATGGTAGAAGAATAACCATCTGGGATTAAGCACGAAAGAATGATGACAATGTCACATGGTCATTTTGCAGAATTCTGTATTGAAGACGATTAGAAGTTTCGAAAACCATGATGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACATCTGGAAATGATAAGC</pcr_primer_p1>
		<pcr_primer_p2>ACTGTTTGACAGTAAGGTCACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAACATCTGGAAATGATAAGCACCAAAAATGACTCATATTCCATGCAAACTCGCTTCGATTGAACTCTTCTTCTTTGCCAGCTGGCTTTAGCAGCCCTTGACCCTTTTATTCCTCTTTTTTTTATATTAATGTATTCATCGAGGTGTCTCTATTCATAATCATCATATGAAGATGAAGAGGTGGAGGAGGAGCGCGGACACAAAGCGAAACGGGCGGTACACGAACAAGTGACCTTACTGTCAAACAGT</canonical_amplicon>
		<polymorphic_amplicon>AAAACATCTGGAAATGATAAGCACCAAAAATGACTCATATTCCATGCAAACTCGCTTCGATTGAACTCTTCTTCKTTGCCAGCTGGCTTTAGCAGCCCTTGACCCTTTTATTCCTCTTTTTTTTATATTAATGTATTCATCGAGGTGTCTCTATTCATAATCATCATATGAAGATGAAGAGGTGGAGGAGGAGCGCGGACACAAAGCGAAACGGGCGGTACACGAACAAGTGACCTTACTGTCAAACAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26227</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>642573</contig_pos>
        <strand>+</strand>
        <context>TTCAGATTAA[C/T]AGAAAACTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTGGAAGATTGGGCAGACTCTGAAATTAATTTTTTGAATTTCAGATTAA</left_flank>
        <right_flank>AGAAAACTCTCACTTTTTACTGGGGAAATTGACAGCGGCGTGGACGACGT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAGGTCACCACCCGTATCGCCACACCCGAGTTGGGGCCTTCCCTAGTTAGGAACCTGTTTTTTTCACTTTTTCCTCAAACTAGGTCCAACTCACTTTAACGCAAACGAAGCGGACTGTCCACACTTCACAATGCCGACTGGCATGCGTTTACGATGAATCGATTTGATCGGAATCGGCTGGAAATCACCGTTTGACGTTGGTCCGAGCAACAGAATATCATTAAGTCGAATGGTTCCAGAGAGCAGTGTTCCACTGGCAATGGTTCCCACTCCATCGACCCAGTAGATGTCATCGATCTGAAATTTATAGGTTATTAAAGTACTGAAAGTTCCTAGTAGGGGAAACCTGGAAATGTGCCGGATCATTCTCATTCAAGGATCTTCTCAGTGGGACGATGTTCAGGAACTGGCGGAGGAGTGGAAGATTGGTTCCCTCTACATTGGACACTTGGAAGATTGGGCAGACTCTGAAATTAATTTTTTGAATTTCAGATTAACAGAAAACTCTCACTTTTTACTGGGGAAATTGACAGCGGCGTGGACGACGTCATCCATGGTTCTCACCAGAATCGGAAGCTTCTTAGCGCTTCTCACCAGTCTTGTGATATTTTTCATAGTTTCCTCGAGAATATTCGCTGGACACATGTCAATTTTAGTGACTACCAGATACACTGGTACATGTAGTGATAGTGCCAGCGAGAGATGTTCTTTGGTGGTTCCAATAATTCCCATATTCGCTCCAATCATCAACATAGTGTAGTCTGGCATGTGTCCCGTCATTCCGAAAATTGTAGTTTTTAGATATTTCTCATGTCCAGCCAAGTCTATGAATGTGACCAGTTTGGCGCAGTCCGAACCGATTTGCACCCAATCCAAATTGTGATTGTGTGGGTCTGGCTTATTCACCACATTTCCATGCACATCAAATCCCAGAATATCATTTCCCACCGATGACGTTCTTCCACTCTCAAATTCATGTTTGTGTCTGAAAAGCTTCG</canonical>
            <polymorphic>TATAGGTCACCACCCGTATCGCCACACCCGAGTTGGGGCCTTCCCTAGTTAGGAACCTGTTTTTTTCACTTTTTCCTCAAACTAGGTCCAACTCACTTTAACGCAAACGAAGCGGACTGTCCACACTTCACAATGCCGACTGGCATGCGTTTACGATGAATCGATTTGATCGGAATCGGCTGGAAATCACCGTTTGACGTTGGTCCGAGCAACAGAATATCATTAAGTCGAATGGTTCCAGAGAGCAGTGTTCCACTGGCAATGGTTCCCACTCCATCGACCCAGTAGATGTCATCGATCTGAAATTTATAGGTTATTAAAGTACTGAAAGTTCCTAGTAGGGGAAACCTGGAAATGTGCCGGATCATTCTCATTCAAGGATCTTCTCAGTGGGACGATGTTCAGGAACTGGCGGAGGAGTGGAAGATTGGTTCCCTCTACATTGGACACTTGGAAGATTGGGCAGACTCTGAAATTAATTTTTTGAATTTCAGATTAAYAGAAAACTCTCACTTTTTACTGGGGAAATTGACAGCGGCGTGGACGACGTCATCCATGGTTCTCACCAGAATCGGAAGCTTCTTAGCGCTTCTCACCAGTCTTGTGATATTTTTCATAGTTTCCTCGAGAATATTCGCTGGACACATGTCAATTTTAGTGACTACCAGATACACTGGTACATGTAGTGATAGTGCCAGCGAGAGATGTTCTTTGGTGGTTCCAATAATTCCCATATTCGCTCCAATCATCAACATAGTGTAGTCTGGCATGTGTCCCGTCATTCCGAAAATTGTAGTTTTTAGATATTTCTCATGTCCAGCCAAGTCTATGAATGTGACCAGTTTGGCGCAGTCCGAACCGATTTGCACCCAATCCAAATTGTGATTGTGTGGGTCTGGCTTATTCACCACATTTCCATGCACATCAAATCCCAGAATATCATTTCCCACCGATGACGTTCTTCCACTCTCAAATTCATGTTTGTGTCTGAAAAGCTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCATTCAAGGATCTTCTCAGT</pcr_primer_p1>
		<pcr_primer_p2>CTATGAAAAATATCACAAGACTGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCATTCAAGGATCTTCTCAGTGGGACGATGTTCAGGAACTGGCGGAGGAGTGGAAGATTGGTTCCCTCTACATTGGACACTTGGAAGATTGGGCAGACTCTGAAATTAATTTTTTGAATTTCAGATTAACAGAAAACTCTCACTTTTTACTGGGGAAATTGACAGCGGCGTGGACGACGTCATCCATGGTTCTCACCAGAATCGGAAGCTTCTTAGCGCTTCTCACCAGTCTTGTGATATTTTTCATAG</canonical_amplicon>
		<polymorphic_amplicon>CTCATTCAAGGATCTTCTCAGTGGGACGATGTTCAGGAACTGGCGGAGGAGTGGAAGATTGGTTCCCTCTACATTGGACACTTGGAAGATTGGGCAGACTCTGAAATTAATTTTTTGAATTTCAGATTAAYAGAAAACTCTCACTTTTTACTGGGGAAATTGACAGCGGCGTGGACGACGTCATCCATGGTTCTCACCAGAATCGGAAGCTTCTTAGCGCTTCTCACCAGTCTTGTGATATTTTTCATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26228</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>643212</contig_pos>
        <strand>+</strand>
        <context>TCTCGAACCA[A/T]CCAAACCTCR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGCGACACGTGCCTCGATGAAGTCCTTCTCTTCTGGCGGATCTCGAACCA</left_flank>
        <right_flank>CCAAACCTCAGTCACCAGGTTCCCCGTTTGCTTTCTTCGCACTACAAGCG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGACACATGTCAATTTTAGTGACTACCAGATACACTGGTACATGTAGTGATAGTGCCAGCGAGAGATGTTCTTTGGTGGTTCCAATAATTCCCATATTCGCTCCAATCATCAACATAGTGTAGTCTGGCATGTGTCCCGTCATTCCGAAAATTGTAGTTTTTAGATATTTCTCATGTCCAGCCAAGTCTATGAATGTGACCAGTTTGGCGCAGTCCGAACCGATTTGCACCCAATCCAAATTGTGATTGTGTGGGTCTGGCTTATTCACCACATTTCCATGCACATCAAATCCCAGAATATCATTTCCCACCGATGACGTTCTTCCACTCTCAAATTCATGTTTGTGTCTGAAAAGCTTCGTACGGGCGGCTCCGCGTCCATCGTCAAGTGCCGAGTGGGTTAGTACACCAAGCAACGTGGATTTTCCAGCATCCACATTACCGACAACAGCGACACGTGCCTCGATGAAGTCCTTCTCTTCTGGCGGATCTCGAACCAACCAAACCTCAGTCACCAGGTTCCCCGTTTGCTTTCTTCGCACTACAAGCGTTCCAATAGCCGGAATCTTCTCTAGAATTTTCTGATGAGCGTCGACGGCTTTCTGCATATCGTCCTCCGGAATTCCAGTTTTGATATTCTTCGAATTGGAATTAATCGGGACTCCCAACTCGATCAAGCACTCTCCCTCGCCTTCCATCAGCTGTTTCCGCAGGTGAATCGAGTACTTCTCGACGTCTTCTGGGGTGGAACGGAGCAAGAATTGGGCGTCGAGTCCACGTTGCACCTTCTCGTCGACCTCATTATCGTCCTCGGCGTACAGCTCACACAGGTTGACGGTTTTCTTCTGGTTCTCCTGTATTCGATCCATTTCTTTTTGTTTTGTGAGAAGTTTGAGTTTGTTAAGCTGAAAAATACAAAATATTCGAAAAATTTAGCTCATAAAAAAGTGAAAAGTAGGCCAAATAAAGAGCTTTTGTATTTTTTGCAACAAAAAAATTC</canonical>
            <polymorphic>GGACACATGTCAATTTTAGTGACTACCAGATACACTGGTACATGTAGTGATAGTGCCAGCGAGAGATGTTCTTTGGTGGTTCCAATAATTCCCATATTCGCTCCAATCATCAACATAGTGTAGTCTGGCATGTGTCCCGTCATTCCGAAAATTGTAGTTTTTAGATATTTCTCATGTCCAGCCAAGTCTATGAATGTGACCAGTTTGGCGCAGTCCGAACCGATTTGCACCCAATCCAAATTGTGATTGTGTGGGTCTGGCTTATTCACCACATTTCCATGCACATCAAATCCCAGAATATCATTTCCCACCGATGACGTTCTTCCACTCTCAAATTCATGTTTGTGTCTGAAAAGCTTCGTACGGGCGGCTCCGCGTCCATCGTCAAGTGCCGAGTGGGTTAGTACACCAAGCAACGTGGATTTTCCAGCATCCACATTACCGACAACAGCGACACGTGCCTCGATGAAGTCCTTCTCTTCTGGCGGATCTCGAACCAWCCAAACCTCAGTCACCAGGTTCCCCGTTTGCTTTCTTCGCACTACAAGCGTTCCAATAGCCGGAATCTTCTCTAGAATTTTCTGATGAGCGTCGACGGCTTTCTGCATATCGTCCTCCGGAATTCCAGTTTTGATATTCTTCGAATTGGAATTAATCGGGACTCCCAACTCGATCAAGCACTCTCCCTCGCCTTCCATCAGCTGTTTCCGCAGGTGAATCGAGTACTTCTCGACGTCTTCTGGGGTGGAACGGAGCAAGAATTGGGCGTCGAGTCCACGTTGCACCTTCTCGTCGACCTCATTATCGTCCTCGGCGTACAGCTCACACAGGTTGACGGTTTTCTTCTGGTTCTCCTGTATTCGATCCATTTCTTTTTGTTTTGTGAGAAGTTTGAGTTTGTTAAGCTGAAAAATACAAAATATTCGAAAAATTTAGCTCATAAAAAAGTGAAAAGTAGGCCAAATAAAGAGCTTTTGTATTTTTTGCAACAAAAAAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCTCAAATTCATGTTTGTGTC</pcr_primer_p1>
		<pcr_primer_p2>TCTAGAGAAGATTCCGGCTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTCTCAAATTCATGTTTGTGTCTGAAAAGCTTCGTACGGGCGGCTCCGCGTCCATCGTCAAGTGCCGAGTGGGTTAGTACACCAAGCAACGTGGATTTTCCAGCATCCACATTACCGACAACAGCGACACGTGCCTCGATGAAGTCCTTCTCTTCTGGCGGATCTCGAACCAACCAAACCTCAGTCACCAGGTTCCCCGTTTGCTTTCTTCGCACTACAAGCGTTCCAATAGCCGGAATCTTCTCTAGA</canonical_amplicon>
		<polymorphic_amplicon>ACTCTCAAATTCATGTTTGTGTCTGAAAAGCTTCGTACGGGCGGCTCCGCGTCCATCGTCAAGTGCCGAGTGGGTTAGTACACCAAGCAACGTGGATTTTCCAGCATCCACATTACCGACAACAGCGACACGTGCCTCGATGAAGTCCTTCTCTTCTGGCGGATCTCGAACCAWCCAAACCTCAGTCACCAGGTTCCCCGTTTGCTTTCTTCGCACTACAAGCGTTCCAATAGCCGGAATCTTCTCTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26229</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>643222</contig_pos>
        <strand>+</strand>
        <context>WCCAAACCTC[A/G]GTCACCAGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCTCGATGAAGTCCTTCTCTTCTGGCGGATCTCGAACCAACCAAACCTC</left_flank>
        <right_flank>GTCACCAGGTTCCCCGTTTGCTTTCTTCGCACTACAAGCGTTCCAATAGC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATTTTAGTGACTACCAGATACACTGGTACATGTAGTGATAGTGCCAGCGAGAGATGTTCTTTGGTGGTTCCAATAATTCCCATATTCGCTCCAATCATCAACATAGTGTAGTCTGGCATGTGTCCCGTCATTCCGAAAATTGTAGTTTTTAGATATTTCTCATGTCCAGCCAAGTCTATGAATGTGACCAGTTTGGCGCAGTCCGAACCGATTTGCACCCAATCCAAATTGTGATTGTGTGGGTCTGGCTTATTCACCACATTTCCATGCACATCAAATCCCAGAATATCATTTCCCACCGATGACGTTCTTCCACTCTCAAATTCATGTTTGTGTCTGAAAAGCTTCGTACGGGCGGCTCCGCGTCCATCGTCAAGTGCCGAGTGGGTTAGTACACCAAGCAACGTGGATTTTCCAGCATCCACATTACCGACAACAGCGACACGTGCCTCGATGAAGTCCTTCTCTTCTGGCGGATCTCGAACCAACCAAACCTCAGTCACCAGGTTCCCCGTTTGCTTTCTTCGCACTACAAGCGTTCCAATAGCCGGAATCTTCTCTAGAATTTTCTGATGAGCGTCGACGGCTTTCTGCATATCGTCCTCCGGAATTCCAGTTTTGATATTCTTCGAATTGGAATTAATCGGGACTCCCAACTCGATCAAGCACTCTCCCTCGCCTTCCATCAGCTGTTTCCGCAGGTGAATCGAGTACTTCTCGACGTCTTCTGGGGTGGAACGGAGCAAGAATTGGGCGTCGAGTCCACGTTGCACCTTCTCGTCGACCTCATTATCGTCCTCGGCGTACAGCTCACACAGGTTGACGGTTTTCTTCTGGTTCTCCTGTATTCGATCCATTTCTTTTTGTTTTGTGAGAAGTTTGAGTTTGTTAAGCTGAAAAATACAAAATATTCGAAAAATTTAGCTCATAAAAAAGTGAAAAGTAGGCCAAATAAAGAGCTTTTGTATTTTTTGCAACAAAAAAATTCCATGGATTGA</canonical>
            <polymorphic>CAATTTTAGTGACTACCAGATACACTGGTACATGTAGTGATAGTGCCAGCGAGAGATGTTCTTTGGTGGTTCCAATAATTCCCATATTCGCTCCAATCATCAACATAGTGTAGTCTGGCATGTGTCCCGTCATTCCGAAAATTGTAGTTTTTAGATATTTCTCATGTCCAGCCAAGTCTATGAATGTGACCAGTTTGGCGCAGTCCGAACCGATTTGCACCCAATCCAAATTGTGATTGTGTGGGTCTGGCTTATTCACCACATTTCCATGCACATCAAATCCCAGAATATCATTTCCCACCGATGACGTTCTTCCACTCTCAAATTCATGTTTGTGTCTGAAAAGCTTCGTACGGGCGGCTCCGCGTCCATCGTCAAGTGCCGAGTGGGTTAGTACACCAAGCAACGTGGATTTTCCAGCATCCACATTACCGACAACAGCGACACGTGCCTCGATGAAGTCCTTCTCTTCTGGCGGATCTCGAACCAACCAAACCTCRGTCACCAGGTTCCCCGTTTGCTTTCTTCGCACTACAAGCGTTCCAATAGCCGGAATCTTCTCTAGAATTTTCTGATGAGCGTCGACGGCTTTCTGCATATCGTCCTCCGGAATTCCAGTTTTGATATTCTTCGAATTGGAATTAATCGGGACTCCCAACTCGATCAAGCACTCTCCCTCGCCTTCCATCAGCTGTTTCCGCAGGTGAATCGAGTACTTCTCGACGTCTTCTGGGGTGGAACGGAGCAAGAATTGGGCGTCGAGTCCACGTTGCACCTTCTCGTCGACCTCATTATCGTCCTCGGCGTACAGCTCACACAGGTTGACGGTTTTCTTCTGGTTCTCCTGTATTCGATCCATTTCTTTTTGTTTTGTGAGAAGTTTGAGTTTGTTAAGCTGAAAAATACAAAATATTCGAAAAATTTAGCTCATAAAAAAGTGAAAAGTAGGCCAAATAAAGAGCTTTTGTATTTTTTGCAACAAAAAAATTCCATGGATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCTCAAATTCATGTTTGTGTC</pcr_primer_p1>
		<pcr_primer_p2>TCTAGAGAAGATTCCGGCTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTCTCAAATTCATGTTTGTGTCTGAAAAGCTTCGTACGGGCGGCTCCGCGTCCATCGTCAAGTGCCGAGTGGGTTAGTACACCAAGCAACGTGGATTTTCCAGCATCCACATTACCGACAACAGCGACACGTGCCTCGATGAAGTCCTTCTCTTCTGGCGGATCTCGAACCAACCAAACCTCAGTCACCAGGTTCCCCGTTTGCTTTCTTCGCACTACAAGCGTTCCAATAGCCGGAATCTTCTCTAGA</canonical_amplicon>
		<polymorphic_amplicon>ACTCTCAAATTCATGTTTGTGTCTGAAAAGCTTCGTACGGGCGGCTCCGCGTCCATCGTCAAGTGCCGAGTGGGTTAGTACACCAAGCAACGTGGATTTTCCAGCATCCACATTACCGACAACAGCGACACGTGCCTCGATGAAGTCCTTCTCTTCTGGCGGATCTCGAACCAACCAAACCTCRGTCACCAGGTTCCCCGTTTGCTTTCTTCGCACTACAAGCGTTCCAATAGCCGGAATCTTCTCTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26230</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>643314</contig_pos>
        <strand>+</strand>
        <context>TCGACGGCTT[G/T]CTGCATATCG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCCAATAGCCGGAATCTTCTCTAGAATTTTCTGATGAGCGTCGACGGCTT</left_flank>
        <right_flank>CTGCATATCGTCCTCCGGAATTCCAGTTTTGATATTCTTCGAATTGGAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAATCATCAACATAGTGTAGTCTGGCATGTGTCCCGTCATTCCGAAAATTGTAGTTTTTAGATATTTCTCATGTCCAGCCAAGTCTATGAATGTGACCAGTTTGGCGCAGTCCGAACCGATTTGCACCCAATCCAAATTGTGATTGTGTGGGTCTGGCTTATTCACCACATTTCCATGCACATCAAATCCCAGAATATCATTTCCCACCGATGACGTTCTTCCACTCTCAAATTCATGTTTGTGTCTGAAAAGCTTCGTACGGGCGGCTCCGCGTCCATCGTCAAGTGCCGAGTGGGTTAGTACACCAAGCAACGTGGATTTTCCAGCATCCACATTACCGACAACAGCGACACGTGCCTCGATGAAGTCCTTCTCTTCTGGCGGATCTCGAACCAACCAAACCTCAGTCACCAGGTTCCCCGTTTGCTTTCTTCGCACTACAAGCGTTCCAATAGCCGGAATCTTCTCTAGAATTTTCTGATGAGCGTCGACGGCTTTCTGCATATCGTCCTCCGGAATTCCAGTTTTGATATTCTTCGAATTGGAATTAATCGGGACTCCCAACTCGATCAAGCACTCTCCCTCGCCTTCCATCAGCTGTTTCCGCAGGTGAATCGAGTACTTCTCGACGTCTTCTGGGGTGGAACGGAGCAAGAATTGGGCGTCGAGTCCACGTTGCACCTTCTCGTCGACCTCATTATCGTCCTCGGCGTACAGCTCACACAGGTTGACGGTTTTCTTCTGGTTCTCCTGTATTCGATCCATTTCTTTTTGTTTTGTGAGAAGTTTGAGTTTGTTAAGCTGAAAAATACAAAATATTCGAAAAATTTAGCTCATAAAAAAGTGAAAAGTAGGCCAAATAAAGAGCTTTTGTATTTTTTGCAACAAAAAAATTCCATGGATTGACTTTTTCAAAAGACTAGAGAAACAAGACGCAGACATTTTGTGTACGTACGAAGAGAGCGACGCGAGGATGTGTGAACAAAAACGACGGAGAA</canonical>
            <polymorphic>CCAATCATCAACATAGTGTAGTCTGGCATGTGTCCCGTCATTCCGAAAATTGTAGTTTTTAGATATTTCTCATGTCCAGCCAAGTCTATGAATGTGACCAGTTTGGCGCAGTCCGAACCGATTTGCACCCAATCCAAATTGTGATTGTGTGGGTCTGGCTTATTCACCACATTTCCATGCACATCAAATCCCAGAATATCATTTCCCACCGATGACGTTCTTCCACTCTCAAATTCATGTTTGTGTCTGAAAAGCTTCGTACGGGCGGCTCCGCGTCCATCGTCAAGTGCCGAGTGGGTTAGTACACCAAGCAACGTGGATTTTCCAGCATCCACATTACCGACAACAGCGACACGTGCCTCGATGAAGTCCTTCTCTTCTGGCGGATCTCGAACCAACCAAACCTCAGTCACCAGGTTCCCCGTTTGCTTTCTTCGCACTACAAGCGTTCCAATAGCCGGAATCTTCTCTAGAATTTTCTGATGAGCGTCGACGGCTTKCTGCATATCGTCCTCCGGAATTCCAGTTTTGATATTCTTCGAATTGGAATTAATCGGGACTCCCAACTCGATCAAGCACTCTCCCTCGCCTTCCATCAGCTGTTTCCGCAGGTGAATCGAGTACTTCTCGACGTCTTCTGGGGTGGAACGGAGCAAGAATTGGGCGTCGAGTCCACGTTGCACCTTCTCGTCGACCTCATTATCGTCCTCGGCGTACAGCTCACACAGGTTGACGGTTTTCTTCTGGTTCTCCTGTATTCGATCCATTTCTTTTTGTTTTGTGAGAAGTTTGAGTTTGTTAAGCTGAAAAATACAAAATATTCGAAAAATTTAGCTCATAAAAAAGTGAAAAGTAGGCCAAATAAAGAGCTTTTGTATTTTTTGCAACAAAAAAATTCCATGGATTGACTTTTTCAAAAGACTAGAGAAACAAGACGCAGACATTTTGTGTACGTACGAAGAGAGCGACGCGAGGATGTGTGAACAAAAACGACGGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCACATTACCGACAACAG</pcr_primer_p1>
		<pcr_primer_p2>GAGAGTGCTTGATCGAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ATCCACATTACCGACAACAGCGACACGTGCCTCGATGAAGTCCTTCTCTTCTGGCGGATCTCGAACCAACCAAACCTCAGTCACCAGGTTCCCCGTTTGCTTTCTTCGCACTACAAGCGTTCCAATAGCCGGAATCTTCTCTAGAATTTTCTGATGAGCGTCGACGGCTTTCTGCATATCGTCCTCCGGAATTCCAGTTTTGATATTCTTCGAATTGGAATTAATCGGGACTCCCAACTCGATCAAGCACTCTC</canonical_amplicon>
		<polymorphic_amplicon>ATCCACATTACCGACAACAGCGACACGTGCCTCGATGAAGTCCTTCTCTTCTGGCGGATCTCGAACCAACCAAACCTCAGTCACCAGGTTCCCCGTTTGCTTTCTTCGCACTACAAGCGTTCCAATAGCCGGAATCTTCTCTAGAATTTTCTGATGAGCGTCGACGGCTTKCTGCATATCGTCCTCCGGAATTCCAGTTTTGATATTCTTCGAATTGGAATTAATCGGGACTCCCAACTCGATCAAGCACTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26231</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>700271</contig_pos>
        <strand>+</strand>
        <context>CGATTCAAAA[A/C]TAATTCMACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTGAGAATCGGAGCAGTTTAATTGTCAATAATATTTTTCGATTCAAAA</left_flank>
        <right_flank>TAATTCCACAAAGTATTTGTGAATATTTTCCAACATTATTGGATGTATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAATAAGCGAATATTTCAAAAATGTTTATTCGATTTTGTGTCAAAATTCTTCTGGGAGCTTTTCGAAATTTCTGGAATCCAAAGAAAGTTTTGTTTACACCTGCCGAGTAATTATACTAATTACCCTACCTATTCAGTTTTTTACATTTTTCTGTATCCTCAAAAAGACGCCAAAAATCATGGATTCTGTGAAATTGAGTCTTTTGAATTTAAATTTTTGGTATACATTTTGTGGAGTTTCTTATTCATTTTTGTCGACACCATACATTTTTTATCCGCAAAGAGTTTTATTCTACATTGGAGTTTTGGGTGATTTGAAAATTCCGAAGGAAGTCAATTACTTTCTTCAACGTTTGGCTAGTTTTTGTAGGTTTTTTTTTCATAAAAAATTTAAAGTCCCAGAAAATATCTGAACATTTCAGTGATGATGCTGGCATTTTTTATCCTATTTGAGAATCGGAGCAGTTTAATTGTCAATAATATTTTTCGATTCAAAAATAATTCCACAAAGTATTTGTGAATATTTTCCAACATTATTGGATGTATGGGACCTTTTATTCCCTTTTTTTCAACTTCCCGGATACCGATGAAGCCAGAATTTTTTTTTTGAAGATGAGGAAAACTCTGAAACTCTGATTTTTAGAATTTTCGAAAATTTAAAGTTTAAAAATGTTGAAAATTGAGAAATTCTAGACACATGCATTTCTAACATTCAATTGATCTGTTTTCTAGGTCATTTAACATGCTAACTTTTGCAAGATTAGTTTTCTAGGCCACCATTGTAACTGCCCTATACAAAAATCAGGTGAATATCAGGTCATTACTAGGCCGTTCACCACTGTAACTATCAACTTGCAAAAGTTAGGCTACCGTACTGAAAAAGCCCAAAATGCATAGAGCATAGAAAAGTTCAATTTTGACAAATTTTGGGATGGTGTCTGAAAAATTTTCCGAGATAGCATCTTCTCAAAAAATTGTCTTTCTCAAATGTCGCATTT</canonical>
            <polymorphic>ACAAATAAGCGAATATTTCAAAAATGTTTATTCGATTTTGTGTCAAAATTCTTCTGGGAGCTTTTCGAAATTTCTGGAATCCAAAGAAAGTTTTGTTTACACCTGCCGAGTAATTATACTAATTACCCTACCTATTCAGTTTTTTACATTTTTCTGTATCCTCAAAAAGACGCCAAAAATCATGGATTCTGTGAAATTGAGTCTTTTGAATTTAAATTTTTGGTATACATTTTGTGGAGTTTCTTATTCATTTTTGTCGACACCATACATTTTTTATCCGCAAAGAGTTTTATTCTACATTGGAGTTTTGGGTGATTTGAAAATTCCGAAGGAAGTCAATTACTTTCTTCAACGTTTGGCTAGTTTTTGTAGGTTTTTTTTTCATAAAAAATTTAAAGTCCCAGAAAATATCTGAACATTTCAGTGATGATGCTGGCATTTTTTATCCTATTTGAGAATCGGAGCAGTTTAATTGTCAATAATATTTTTCGATTCAAAAMTAATTCCACAAAGTATTTGTGAATATTTTCCAACATTATTGGATGTATGGGACCTTTTATTCCCTTTTTTTCAACTTCCCGGATACCGATGAAGCCAGAATTTTTTTTTTGAAGATGAGGAAAACTCTGAAACTCTGATTTTTAGAATTTTCGAAAATTTAAAGTTTAAAAATGTTGAAAATTGAGAAATTCTAGACACATGCATTTCTAACATTCAATTGATCTGTTTTCTAGGTCATTTAACATGCTAACTTTTGCAAGATTAGTTTTCTAGGCCACCATTGTAACTGCCCTATACAAAAATCAGGTGAATATCAGGTCATTACTAGGCCGTTCACCACTGTAACTATCAACTTGCAAAAGTTAGGCTACCGTACTGAAAAAGCCCAAAATGCATAGAGCATAGAAAAGTTCAATTTTGACAAATTTTGGGATGGTGTCTGAAAAATTTTCCGAGATAGCATCTTCTCAAAAAATTGTCTTTCTCAAATGTCGCATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTTAAAGTCCCAGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGAGTTTCAGAGTTTTCCTCATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTTAAAGTCCCAGAAAATATCTGAACATTTCAGTGATGATGCTGGCATTTTTTATCCTATTTGAGAATCGGAGCAGTTTAATTGTCAATAATATTTTTCGATTCAAAAATAATTCCACAAAGTATTTGTGAATATTTTCCAACATTATTGGATGTATGGGACCTTTTATTCCCTTTTTTTCAACTTCCCGGATACCGATGAAGCCAGAATTTTTTTTTTGAAGATGAGGAAAACTCTGAAACTCT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTTAAAGTCCCAGAAAATATCTGAACATTTCAGTGATGATGCTGGCATTTTTTATCCTATTTGAGAATCGGAGCAGTTTAATTGTCAATAATATTTTTCGATTCAAAAMTAATTCCACAAAGTATTTGTGAATATTTTCCAACATTATTGGATGTATGGGACCTTTTATTCCCTTTTTTTCAACTTCCCGGATACCGATGAAGCCAGAATTTTTTTTTTGAAGATGAGGAAAACTCTGAAACTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26232</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>700278</contig_pos>
        <strand>+</strand>
        <context>AAAMTAATTC[A/C]ACAAAGTATT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATCGGAGCAGTTTAATTGTCAATAATATTTTTCGATTCAAAAATAATTC</left_flank>
        <right_flank>ACAAAGTATTTGTGAATATTTTCCAACATTATTGGATGTATGGGACCTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCGAATATTTCAAAAATGTTTATTCGATTTTGTGTCAAAATTCTTCTGGGAGCTTTTCGAAATTTCTGGAATCCAAAGAAAGTTTTGTTTACACCTGCCGAGTAATTATACTAATTACCCTACCTATTCAGTTTTTTACATTTTTCTGTATCCTCAAAAAGACGCCAAAAATCATGGATTCTGTGAAATTGAGTCTTTTGAATTTAAATTTTTGGTATACATTTTGTGGAGTTTCTTATTCATTTTTGTCGACACCATACATTTTTTATCCGCAAAGAGTTTTATTCTACATTGGAGTTTTGGGTGATTTGAAAATTCCGAAGGAAGTCAATTACTTTCTTCAACGTTTGGCTAGTTTTTGTAGGTTTTTTTTTCATAAAAAATTTAAAGTCCCAGAAAATATCTGAACATTTCAGTGATGATGCTGGCATTTTTTATCCTATTTGAGAATCGGAGCAGTTTAATTGTCAATAATATTTTTCGATTCAAAAATAATTCCACAAAGTATTTGTGAATATTTTCCAACATTATTGGATGTATGGGACCTTTTATTCCCTTTTTTTCAACTTCCCGGATACCGATGAAGCCAGAATTTTTTTTTTGAAGATGAGGAAAACTCTGAAACTCTGATTTTTAGAATTTTCGAAAATTTAAAGTTTAAAAATGTTGAAAATTGAGAAATTCTAGACACATGCATTTCTAACATTCAATTGATCTGTTTTCTAGGTCATTTAACATGCTAACTTTTGCAAGATTAGTTTTCTAGGCCACCATTGTAACTGCCCTATACAAAAATCAGGTGAATATCAGGTCATTACTAGGCCGTTCACCACTGTAACTATCAACTTGCAAAAGTTAGGCTACCGTACTGAAAAAGCCCAAAATGCATAGAGCATAGAAAAGTTCAATTTTGACAAATTTTGGGATGGTGTCTGAAAAATTTTCCGAGATAGCATCTTCTCAAAAAATTGTCTTTCTCAAATGTCGCATTTTTTTAGG</canonical>
            <polymorphic>AGCGAATATTTCAAAAATGTTTATTCGATTTTGTGTCAAAATTCTTCTGGGAGCTTTTCGAAATTTCTGGAATCCAAAGAAAGTTTTGTTTACACCTGCCGAGTAATTATACTAATTACCCTACCTATTCAGTTTTTTACATTTTTCTGTATCCTCAAAAAGACGCCAAAAATCATGGATTCTGTGAAATTGAGTCTTTTGAATTTAAATTTTTGGTATACATTTTGTGGAGTTTCTTATTCATTTTTGTCGACACCATACATTTTTTATCCGCAAAGAGTTTTATTCTACATTGGAGTTTTGGGTGATTTGAAAATTCCGAAGGAAGTCAATTACTTTCTTCAACGTTTGGCTAGTTTTTGTAGGTTTTTTTTTCATAAAAAATTTAAAGTCCCAGAAAATATCTGAACATTTCAGTGATGATGCTGGCATTTTTTATCCTATTTGAGAATCGGAGCAGTTTAATTGTCAATAATATTTTTCGATTCAAAAATAATTCMACAAAGTATTTGTGAATATTTTCCAACATTATTGGATGTATGGGACCTTTTATTCCCTTTTTTTCAACTTCCCGGATACCGATGAAGCCAGAATTTTTTTTTTGAAGATGAGGAAAACTCTGAAACTCTGATTTTTAGAATTTTCGAAAATTTAAAGTTTAAAAATGTTGAAAATTGAGAAATTCTAGACACATGCATTTCTAACATTCAATTGATCTGTTTTCTAGGTCATTTAACATGCTAACTTTTGCAAGATTAGTTTTCTAGGCCACCATTGTAACTGCCCTATACAAAAATCAGGTGAATATCAGGTCATTACTAGGCCGTTCACCACTGTAACTATCAACTTGCAAAAGTTAGGCTACCGTACTGAAAAAGCCCAAAATGCATAGAGCATAGAAAAGTTCAATTTTGACAAATTTTGGGATGGTGTCTGAAAAATTTTCCGAGATAGCATCTTCTCAAAAAATTGTCTTTCTCAAATGTCGCATTTTTTTAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>177 112 99 92 82 80 68 59 52 43 35 32 27 26 13 3</canonical_bands>
                <polymorphic_bands>177 112 99 95 92 80 68 59 52 43 35 32 27 26 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTTAAAGTCCCAGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGAGTTTCAGAGTTTTCCTCATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTTAAAGTCCCAGAAAATATCTGAACATTTCAGTGATGATGCTGGCATTTTTTATCCTATTTGAGAATCGGAGCAGTTTAATTGTCAATAATATTTTTCGATTCAAAAATAATTCCACAAAGTATTTGTGAATATTTTCCAACATTATTGGATGTATGGGACCTTTTATTCCCTTTTTTTCAACTTCCCGGATACCGATGAAGCCAGAATTTTTTTTTTGAAGATGAGGAAAACTCTGAAACTCT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTTAAAGTCCCAGAAAATATCTGAACATTTCAGTGATGATGCTGGCATTTTTTATCCTATTTGAGAATCGGAGCAGTTTAATTGTCAATAATATTTTTCGATTCAAAAATAATTCMACAAAGTATTTGTGAATATTTTCCAACATTATTGGATGTATGGGACCTTTTATTCCCTTTTTTTCAACTTCCCGGATACCGATGAAGCCAGAATTTTTTTTTTGAAGATGAGGAAAACTCTGAAACTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26233</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>702676</contig_pos>
        <strand>+</strand>
        <context>CGGAAATGTC[C/G]GGAAGTAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCAGTTGCCAATCATTGAGATGTGCTCGATGTGAGTGCTACGGAAATGTC</left_flank>
        <right_flank>GGAAGTAATATGGGTTTAAAAAAAAACGAATGAAGTATACCTGACGACAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTGGATTTTTGAACTTGAAATATGTTCAGATTATCTCAGCTGCGGATTCTCAAAAATTTTCGCAGTTTTGAAATATCACGAAATTTGAAAAATTTTTTTGAAAACTAAGGTCATCAGTGTTCAGAATAGTTCCATGCAACTTACAACAAATTCATTATAACAAACTTTTACTCGTAATGAAAAATGATGTTTTGGTACATAGAAATTATCACAAACAGAAAAAAATTAACTATTGAAAAGCTATTAAAACACAGGTGACATAGATTCACATGGATTTGGAAAATTTCGAGATTCCCATAGATATCGTGCTATCCTGTCACATTTCACTGGAACTCTATCGTAAACATTTAGGACCCGTTTGATTATTGCATTTGTCAACTTTTCGGCAAATTCTGATTCCAGTGGTCGTTTAGTGACTTTTAGTAAAGACCCATCGGCTTGAGTGACCAGTTGCCAATCATTGAGATGTGCTCGATGTGAGTGCTACGGAAATGTCTGGAAGTAATATGGGTTTAAAAAAAAACGAATGAAGTATACCTGACGACAGCTTGAGATTCGTCCACTTGAATTGTCCTGACGCCAGGTAGTTTGGCAATAGCGAAATGGATGAACATGATTCCGACATATAAAAATACATGCAACAGACATTTTTTTCCGATTCAAAAGATCGGGAAGAAAGATTTCTATCTCATAGTTTCGTACTTTGTCTGTAGTTCGCATTCCTTTTCGAACAGGCGAAGCTCAGATAAAAATCAGGATGTGTGCCGTATTATCCCTAGTAGAACGCCACCGATCCTATAAAAGACACTCCCATGTATTATTTTCAATACTGGAAAATAAAATTGAGCGTGGGATCATCTTCCTCGACGAATTTCGATGTCACCGATTATGGGTGTTACCGAAGCGATGTGTTCAATAGATTGAGAATAGATGCTGTGGAGTACGCTGTGACAAAAATAAGACAATAACTTAAAGATAAGGAAAACAGAAAGGGCAG</canonical>
            <polymorphic>ACTTTGGATTTTTGAACTTGAAATATGTTCAGATTATCTCAGCTGCGGATTCTCAAAAATTTTCGCAGTTTTGAAATATCACGAAATTTGAAAAATTTTTTTGAAAACTAAGGTCATCAGTGTTCAGAATAGTTCCATGCAACTTACAACAAATTCATTATAACAAACTTTTACTCGTAATGAAAAATGATGTTTTGGTACATAGAAATTATCACAAACAGAAAAAAATTAACTATTGAAAAGCTATTAAAACACAGGTGACATAGATTCACATGGATTTGGAAAATTTCGAGATTCCCATAGATATCGTGCTATCCTGTCACATTTCACTGGAACTCTATCGTAAACATTTAGGACCCGTTTGATTATTGCATTTGTCAACTTTTCGGCAAATTCTGATTCCAGTGGTCGTTTAGTGACTTTTAGTAAAGACCCATCGGCTTGAGTGACCAGTTGCCAATCATTGAGATGTGCTCGATGTGAGTGCTACGGAAATGTCSGGAAGTAATATGGGTTTAAAAAAAAACGAATGAAGTATACCTGACGACAGCTTGAGATTCGTCCACTTGAATTGTCCTGACGCCAGGTAGTTTGGCAATAGCGAAATGGATGAACATGATTCCGACATATAAAAATACATGCAACAGACATTTTTTTCCGATTCAAAAGATCGGGAAGAAAGATTTCTATCTCATAGTTTCGTACTTTGTCTGTAGTTCGCATTCCTTTTCGAACAGGCGAAGCTCAGATAAAAATCAGGATGTGTGCCGTATTATCCCTAGTAGAACGCCACCGATCCTATAAAAGACACTCCCATGTATTATTTTCAATACTGGAAAATAAAATTGAGCGTGGGATCATCTTCCTCGACGAATTTCGATGTCACCGATTATGGGTGTTACCGAAGCGATGTGTTCAATAGATTGAGAATAGATGCTGTGGAGTACGCTGTGACAAAAATAAGACAATAACTTAAAGATAAGGAAAACAGAAAGGGCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGGTCGTTTAGTGACTTTTAG</pcr_primer_p1>
		<pcr_primer_p2>AAATGTCTGTTGCATGTATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTGGTCGTTTAGTGACTTTTAGTAAAGACCCATCGGCTTGAGTGACCAGTTGCCAATCATTGAGATGTGCTCGATGTGAGTGCTACGGAAATGTCTGGAAGTAATATGGGTTTAAAAAAAAACGAATGAAGTATACCTGACGACAGCTTGAGATTCGTCCACTTGAATTGTCCTGACGCCAGGTAGTTTGGCAATAGCGAAATGGATGAACATGATTCCGACATATAAAAATACATGCAACAGACATTT</canonical_amplicon>
		<polymorphic_amplicon>AGTGGTCGTTTAGTGACTTTTAGTAAAGACCCATCGGCTTGAGTGACCAGTTGCCAATCATTGAGATGTGCTCGATGTGAGTGCTACGGAAATGTCSGGAAGTAATATGGGTTTAAAAAAAAACGAATGAAGTATACCTGACGACAGCTTGAGATTCGTCCACTTGAATTGTCCTGACGCCAGGTAGTTTGGCAATAGCGAAATGGATGAACATGATTCCGACATATAAAAATACATGCAACAGACATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26234</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>702803</contig_pos>
        <strand>+</strand>
        <context>TGATTCCGAC[A/C]TATAAAAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGACGCCAGGTAGTTTGGCAATAGCGAAATGGATGAACATGATTCCGAC</left_flank>
        <right_flank>TATAAAAATACATGCAACAGACATTTTTTTCCGATTCAAAAGATCGGGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAGTTCCATGCAACTTACAACAAATTCATTATAACAAACTTTTACTCGTAATGAAAAATGATGTTTTGGTACATAGAAATTATCACAAACAGAAAAAAATTAACTATTGAAAAGCTATTAAAACACAGGTGACATAGATTCACATGGATTTGGAAAATTTCGAGATTCCCATAGATATCGTGCTATCCTGTCACATTTCACTGGAACTCTATCGTAAACATTTAGGACCCGTTTGATTATTGCATTTGTCAACTTTTCGGCAAATTCTGATTCCAGTGGTCGTTTAGTGACTTTTAGTAAAGACCCATCGGCTTGAGTGACCAGTTGCCAATCATTGAGATGTGCTCGATGTGAGTGCTACGGAAATGTCTGGAAGTAATATGGGTTTAAAAAAAAACGAATGAAGTATACCTGACGACAGCTTGAGATTCGTCCACTTGAATTGTCCTGACGCCAGGTAGTTTGGCAATAGCGAAATGGATGAACATGATTCCGACATATAAAAATACATGCAACAGACATTTTTTTCCGATTCAAAAGATCGGGAAGAAAGATTTCTATCTCATAGTTTCGTACTTTGTCTGTAGTTCGCATTCCTTTTCGAACAGGCGAAGCTCAGATAAAAATCAGGATGTGTGCCGTATTATCCCTAGTAGAACGCCACCGATCCTATAAAAGACACTCCCATGTATTATTTTCAATACTGGAAAATAAAATTGAGCGTGGGATCATCTTCCTCGACGAATTTCGATGTCACCGATTATGGGTGTTACCGAAGCGATGTGTTCAATAGATTGAGAATAGATGCTGTGGAGTACGCTGTGACAAAAATAAGACAATAACTTAAAGATAAGGAAAACAGAAAGGGCAGGATATAAATCCAAAAATAGGCTGTATAAGGAAGCGGAAGAAGGTACGGAAATCGACTTAAGATCGTGATCGGACTACTAGGGTTAAGGATAGGAAGTTTTTAAATTGCAAGATGACGTTATATTAGA</canonical>
            <polymorphic>AATAGTTCCATGCAACTTACAACAAATTCATTATAACAAACTTTTACTCGTAATGAAAAATGATGTTTTGGTACATAGAAATTATCACAAACAGAAAAAAATTAACTATTGAAAAGCTATTAAAACACAGGTGACATAGATTCACATGGATTTGGAAAATTTCGAGATTCCCATAGATATCGTGCTATCCTGTCACATTTCACTGGAACTCTATCGTAAACATTTAGGACCCGTTTGATTATTGCATTTGTCAACTTTTCGGCAAATTCTGATTCCAGTGGTCGTTTAGTGACTTTTAGTAAAGACCCATCGGCTTGAGTGACCAGTTGCCAATCATTGAGATGTGCTCGATGTGAGTGCTACGGAAATGTCTGGAAGTAATATGGGTTTAAAAAAAAACGAATGAAGTATACCTGACGACAGCTTGAGATTCGTCCACTTGAATTGTCCTGACGCCAGGTAGTTTGGCAATAGCGAAATGGATGAACATGATTCCGACMTATAAAAATACATGCAACAGACATTTTTTTCCGATTCAAAAGATCGGGAAGAAAGATTTCTATCTCATAGTTTCGTACTTTGTCTGTAGTTCGCATTCCTTTTCGAACAGGCGAAGCTCAGATAAAAATCAGGATGTGTGCCGTATTATCCCTAGTAGAACGCCACCGATCCTATAAAAGACACTCCCATGTATTATTTTCAATACTGGAAAATAAAATTGAGCGTGGGATCATCTTCCTCGACGAATTTCGATGTCACCGATTATGGGTGTTACCGAAGCGATGTGTTCAATAGATTGAGAATAGATGCTGTGGAGTACGCTGTGACAAAAATAAGACAATAACTTAAAGATAAGGAAAACAGAAAGGGCAGGATATAAATCCAAAAATAGGCTGTATAAGGAAGCGGAAGAAGGTACGGAAATCGACTTAAGATCGTGATCGGACTACTAGGGTTAAGGATAGGAAGTTTTTAAATTGCAAGATGACGTTATATTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATACCTGACGACAGCTTGAG</pcr_primer_p1>
		<pcr_primer_p2>TACTAGGGATAATACGGCACAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATACCTGACGACAGCTTGAGATTCGTCCACTTGAATTGTCCTGACGCCAGGTAGTTTGGCAATAGCGAAATGGATGAACATGATTCCGACATATAAAAATACATGCAACAGACATTTTTTTCCGATTCAAAAGATCGGGAAGAAAGATTTCTATCTCATAGTTTCGTACTTTGTCTGTAGTTCGCATTCCTTTTCGAACAGGCGAAGCTCAGATAAAAATCAGGATGTGTGCCGTATTATCCCTAGTA</canonical_amplicon>
		<polymorphic_amplicon>TATACCTGACGACAGCTTGAGATTCGTCCACTTGAATTGTCCTGACGCCAGGTAGTTTGGCAATAGCGAAATGGATGAACATGATTCCGACMTATAAAAATACATGCAACAGACATTTTTTTCCGATTCAAAAGATCGGGAAGAAAGATTTCTATCTCATAGTTTCGTACTTTGTCTGTAGTTCGCATTCCTTTTCGAACAGGCGAAGCTCAGATAAAAATCAGGATGTGTGCCGTATTATCCCTAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26235</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>702854</contig_pos>
        <strand>+</strand>
        <context>AGATCGGGAA[A/G]AAAGATTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATAAAAATACATGCAACAGACATTTTTTTCCGATTCAAAAGATCGGGAA</left_flank>
        <right_flank>AAAGATTTCTATCTCATAGTTTCGTACTTTGTCTGTAGTTCGCATTCCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGAAAAATGATGTTTTGGTACATAGAAATTATCACAAACAGAAAAAAATTAACTATTGAAAAGCTATTAAAACACAGGTGACATAGATTCACATGGATTTGGAAAATTTCGAGATTCCCATAGATATCGTGCTATCCTGTCACATTTCACTGGAACTCTATCGTAAACATTTAGGACCCGTTTGATTATTGCATTTGTCAACTTTTCGGCAAATTCTGATTCCAGTGGTCGTTTAGTGACTTTTAGTAAAGACCCATCGGCTTGAGTGACCAGTTGCCAATCATTGAGATGTGCTCGATGTGAGTGCTACGGAAATGTCTGGAAGTAATATGGGTTTAAAAAAAAACGAATGAAGTATACCTGACGACAGCTTGAGATTCGTCCACTTGAATTGTCCTGACGCCAGGTAGTTTGGCAATAGCGAAATGGATGAACATGATTCCGACATATAAAAATACATGCAACAGACATTTTTTTCCGATTCAAAAGATCGGGAAGAAAGATTTCTATCTCATAGTTTCGTACTTTGTCTGTAGTTCGCATTCCTTTTCGAACAGGCGAAGCTCAGATAAAAATCAGGATGTGTGCCGTATTATCCCTAGTAGAACGCCACCGATCCTATAAAAGACACTCCCATGTATTATTTTCAATACTGGAAAATAAAATTGAGCGTGGGATCATCTTCCTCGACGAATTTCGATGTCACCGATTATGGGTGTTACCGAAGCGATGTGTTCAATAGATTGAGAATAGATGCTGTGGAGTACGCTGTGACAAAAATAAGACAATAACTTAAAGATAAGGAAAACAGAAAGGGCAGGATATAAATCCAAAAATAGGCTGTATAAGGAAGCGGAAGAAGGTACGGAAATCGACTTAAGATCGTGATCGGACTACTAGGGTTAAGGATAGGAAGTTTTTAAATTGCAAGATGACGTTATATTAGAGGTAATACGGTACTTGCAACTCATACCTTTTCTGGCTTAACTATAGCTTTC</canonical>
            <polymorphic>AATGAAAAATGATGTTTTGGTACATAGAAATTATCACAAACAGAAAAAAATTAACTATTGAAAAGCTATTAAAACACAGGTGACATAGATTCACATGGATTTGGAAAATTTCGAGATTCCCATAGATATCGTGCTATCCTGTCACATTTCACTGGAACTCTATCGTAAACATTTAGGACCCGTTTGATTATTGCATTTGTCAACTTTTCGGCAAATTCTGATTCCAGTGGTCGTTTAGTGACTTTTAGTAAAGACCCATCGGCTTGAGTGACCAGTTGCCAATCATTGAGATGTGCTCGATGTGAGTGCTACGGAAATGTCTGGAAGTAATATGGGTTTAAAAAAAAACGAATGAAGTATACCTGACGACAGCTTGAGATTCGTCCACTTGAATTGTCCTGACGCCAGGTAGTTTGGCAATAGCGAAATGGATGAACATGATTCCGACATATAAAAATACATGCAACAGACATTTTTTTCCGATTCAAAAGATCGGGAARAAAGATTTCTATCTCATAGTTTCGTACTTTGTCTGTAGTTCGCATTCCTTTTCGAACAGGCGAAGCTCAGATAAAAATCAGGATGTGTGCCGTATTATCCCTAGTAGAACGCCACCGATCCTATAAAAGACACTCCCATGTATTATTTTCAATACTGGAAAATAAAATTGAGCGTGGGATCATCTTCCTCGACGAATTTCGATGTCACCGATTATGGGTGTTACCGAAGCGATGTGTTCAATAGATTGAGAATAGATGCTGTGGAGTACGCTGTGACAAAAATAAGACAATAACTTAAAGATAAGGAAAACAGAAAGGGCAGGATATAAATCCAAAAATAGGCTGTATAAGGAAGCGGAAGAAGGTACGGAAATCGACTTAAGATCGTGATCGGACTACTAGGGTTAAGGATAGGAAGTTTTTAAATTGCAAGATGACGTTATATTAGAGGTAATACGGTACTTGCAACTCATACCTTTTCTGGCTTAACTATAGCTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATACCTGACGACAGCTTGAG</pcr_primer_p1>
		<pcr_primer_p2>TACTAGGGATAATACGGCACAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATACCTGACGACAGCTTGAGATTCGTCCACTTGAATTGTCCTGACGCCAGGTAGTTTGGCAATAGCGAAATGGATGAACATGATTCCGACATATAAAAATACATGCAACAGACATTTTTTTCCGATTCAAAAGATCGGGAAGAAAGATTTCTATCTCATAGTTTCGTACTTTGTCTGTAGTTCGCATTCCTTTTCGAACAGGCGAAGCTCAGATAAAAATCAGGATGTGTGCCGTATTATCCCTAGTA</canonical_amplicon>
		<polymorphic_amplicon>TATACCTGACGACAGCTTGAGATTCGTCCACTTGAATTGTCCTGACGCCAGGTAGTTTGGCAATAGCGAAATGGATGAACATGATTCCGACATATAAAAATACATGCAACAGACATTTTTTTCCGATTCAAAAGATCGGGAARAAAGATTTCTATCTCATAGTTTCGTACTTTGTCTGTAGTTCGCATTCCTTTTCGAACAGGCGAAGCTCAGATAAAAATCAGGATGTGTGCCGTATTATCCCTAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26236</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>702994</contig_pos>
        <strand>+</strand>
        <context>ACACTCCCAT[G/T]TATTATTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCGTATTATCCCTAGTAGAACGCCACCGATCCTATAAAAGACACTCCCAT</left_flank>
        <right_flank>TATTATTTTCAATACTGGAAAATAAAATTGAGCGTGGGATCATCTTCCTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCACATTTCACTGGAACTCTATCGTAAACATTTAGGACCCGTTTGATTATTGCATTTGTCAACTTTTCGGCAAATTCTGATTCCAGTGGTCGTTTAGTGACTTTTAGTAAAGACCCATCGGCTTGAGTGACCAGTTGCCAATCATTGAGATGTGCTCGATGTGAGTGCTACGGAAATGTCTGGAAGTAATATGGGTTTAAAAAAAAACGAATGAAGTATACCTGACGACAGCTTGAGATTCGTCCACTTGAATTGTCCTGACGCCAGGTAGTTTGGCAATAGCGAAATGGATGAACATGATTCCGACATATAAAAATACATGCAACAGACATTTTTTTCCGATTCAAAAGATCGGGAAGAAAGATTTCTATCTCATAGTTTCGTACTTTGTCTGTAGTTCGCATTCCTTTTCGAACAGGCGAAGCTCAGATAAAAATCAGGATGTGTGCCGTATTATCCCTAGTAGAACGCCACCGATCCTATAAAAGACACTCCCATGTATTATTTTCAATACTGGAAAATAAAATTGAGCGTGGGATCATCTTCCTCGACGAATTTCGATGTCACCGATTATGGGTGTTACCGAAGCGATGTGTTCAATAGATTGAGAATAGATGCTGTGGAGTACGCTGTGACAAAAATAAGACAATAACTTAAAGATAAGGAAAACAGAAAGGGCAGGATATAAATCCAAAAATAGGCTGTATAAGGAAGCGGAAGAAGGTACGGAAATCGACTTAAGATCGTGATCGGACTACTAGGGTTAAGGATAGGAAGTTTTTAAATTGCAAGATGACGTTATATTAGAGGTAATACGGTACTTGCAACTCATACCTTTTCTGGCTTAACTATAGCTTTCGATGCATTCCAAGTTGGATCAATCGAATCTGTCCACTTCCGGAACATCATATCCTCTTTTAACTTTACAACGTTATCAAATTCTTCTGGCATGTCATCATATTTGACTATATTCAAAACTGGAATTTGAATCTCCCCAAC</canonical>
            <polymorphic>GTCACATTTCACTGGAACTCTATCGTAAACATTTAGGACCCGTTTGATTATTGCATTTGTCAACTTTTCGGCAAATTCTGATTCCAGTGGTCGTTTAGTGACTTTTAGTAAAGACCCATCGGCTTGAGTGACCAGTTGCCAATCATTGAGATGTGCTCGATGTGAGTGCTACGGAAATGTCTGGAAGTAATATGGGTTTAAAAAAAAACGAATGAAGTATACCTGACGACAGCTTGAGATTCGTCCACTTGAATTGTCCTGACGCCAGGTAGTTTGGCAATAGCGAAATGGATGAACATGATTCCGACATATAAAAATACATGCAACAGACATTTTTTTCCGATTCAAAAGATCGGGAAGAAAGATTTCTATCTCATAGTTTCGTACTTTGTCTGTAGTTCGCATTCCTTTTCGAACAGGCGAAGCTCAGATAAAAATCAGGATGTGTGCCGTATTATCCCTAGTAGAACGCCACCGATCCTATAAAAGACACTCCCATKTATTATTTTCAATACTGGAAAATAAAATTGAGCGTGGGATCATCTTCCTCGACGAATTTCGATGTCACCGATTATGGGTGTTACCGAAGCGATGTGTTCAATAGATTGAGAATAGATGCTGTGGAGTACGCTGTGACAAAAATAAGACAATAACTTAAAGATAAGGAAAACAGAAAGGGCAGGATATAAATCCAAAAATAGGCTGTATAAGGAAGCGGAAGAAGGTACGGAAATCGACTTAAGATCGTGATCGGACTACTAGGGTTAAGGATAGGAAGTTTTTAAATTGCAAGATGACGTTATATTAGAGGTAATACGGTACTTGCAACTCATACCTTTTCTGGCTTAACTATAGCTTTCGATGCATTCCAAGTTGGATCAATCGAATCTGTCCACTTCCGGAACATCATATCCTCTTTTAACTTTACAACGTTATCAAATTCTTCTGGCATGTCATCATATTTGACTATATTCAAAACTGGAATTTGAATCTCCCCAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>453 297 177 50 23</canonical_bands>
                <polymorphic_bands>630 297 50 23</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>505 347 148</canonical_bands>
                <polymorphic_bands>852 148</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCATAGTTTCGTACTTTGTCTGT</pcr_primer_p1>
		<pcr_primer_p2>CCACAGCATCTATTCTCAATCTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTCATAGTTTCGTACTTTGTCTGTAGTTCGCATTCCTTTTCGAACAGGCGAAGCTCAGATAAAAATCAGGATGTGTGCCGTATTATCCCTAGTAGAACGCCACCGATCCTATAAAAGACACTCCCATGTATTATTTTCAATACTGGAAAATAAAATTGAGCGTGGGATCATCTTCCTCGACGAATTTCGATGTCACCGATTATGGGTGTTACCGAAGCGATGTGTTCAATAGATTGAGAATAGATGCTGTGG</canonical_amplicon>
		<polymorphic_amplicon>CTCATAGTTTCGTACTTTGTCTGTAGTTCGCATTCCTTTTCGAACAGGCGAAGCTCAGATAAAAATCAGGATGTGTGCCGTATTATCCCTAGTAGAACGCCACCGATCCTATAAAAGACACTCCCATKTATTATTTTCAATACTGGAAAATAAAATTGAGCGTGGGATCATCTTCCTCGACGAATTTCGATGTCACCGATTATGGGTGTTACCGAAGCGATGTGTTCAATAGATTGAGAATAGATGCTGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26237</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>703025</contig_pos>
        <strand>+</strand>
        <context>AATAAAATTG[A/G]GCGTGGGATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTATAAAAGACACTCCCATGTATTATTTTCAATACTGGAAAATAAAATTG</left_flank>
        <right_flank>GCGTGGGATCATCTTCCTCGACGAATTTCGATGTCACCGATTATGGGTGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAGGACCCGTTTGATTATTGCATTTGTCAACTTTTCGGCAAATTCTGATTCCAGTGGTCGTTTAGTGACTTTTAGTAAAGACCCATCGGCTTGAGTGACCAGTTGCCAATCATTGAGATGTGCTCGATGTGAGTGCTACGGAAATGTCTGGAAGTAATATGGGTTTAAAAAAAAACGAATGAAGTATACCTGACGACAGCTTGAGATTCGTCCACTTGAATTGTCCTGACGCCAGGTAGTTTGGCAATAGCGAAATGGATGAACATGATTCCGACATATAAAAATACATGCAACAGACATTTTTTTCCGATTCAAAAGATCGGGAAGAAAGATTTCTATCTCATAGTTTCGTACTTTGTCTGTAGTTCGCATTCCTTTTCGAACAGGCGAAGCTCAGATAAAAATCAGGATGTGTGCCGTATTATCCCTAGTAGAACGCCACCGATCCTATAAAAGACACTCCCATGTATTATTTTCAATACTGGAAAATAAAATTGAGCGTGGGATCATCTTCCTCGACGAATTTCGATGTCACCGATTATGGGTGTTACCGAAGCGATGTGTTCAATAGATTGAGAATAGATGCTGTGGAGTACGCTGTGACAAAAATAAGACAATAACTTAAAGATAAGGAAAACAGAAAGGGCAGGATATAAATCCAAAAATAGGCTGTATAAGGAAGCGGAAGAAGGTACGGAAATCGACTTAAGATCGTGATCGGACTACTAGGGTTAAGGATAGGAAGTTTTTAAATTGCAAGATGACGTTATATTAGAGGTAATACGGTACTTGCAACTCATACCTTTTCTGGCTTAACTATAGCTTTCGATGCATTCCAAGTTGGATCAATCGAATCTGTCCACTTCCGGAACATCATATCCTCTTTTAACTTTACAACGTTATCAAATTCTTCTGGCATGTCATCATATTTGACTATATTCAAAACTGGAATTTGAATCTCCCCAACATTGGAATCTTGTCCATTTAGAAGTTCGATA</canonical>
            <polymorphic>TTTAGGACCCGTTTGATTATTGCATTTGTCAACTTTTCGGCAAATTCTGATTCCAGTGGTCGTTTAGTGACTTTTAGTAAAGACCCATCGGCTTGAGTGACCAGTTGCCAATCATTGAGATGTGCTCGATGTGAGTGCTACGGAAATGTCTGGAAGTAATATGGGTTTAAAAAAAAACGAATGAAGTATACCTGACGACAGCTTGAGATTCGTCCACTTGAATTGTCCTGACGCCAGGTAGTTTGGCAATAGCGAAATGGATGAACATGATTCCGACATATAAAAATACATGCAACAGACATTTTTTTCCGATTCAAAAGATCGGGAAGAAAGATTTCTATCTCATAGTTTCGTACTTTGTCTGTAGTTCGCATTCCTTTTCGAACAGGCGAAGCTCAGATAAAAATCAGGATGTGTGCCGTATTATCCCTAGTAGAACGCCACCGATCCTATAAAAGACACTCCCATGTATTATTTTCAATACTGGAAAATAAAATTGRGCGTGGGATCATCTTCCTCGACGAATTTCGATGTCACCGATTATGGGTGTTACCGAAGCGATGTGTTCAATAGATTGAGAATAGATGCTGTGGAGTACGCTGTGACAAAAATAAGACAATAACTTAAAGATAAGGAAAACAGAAAGGGCAGGATATAAATCCAAAAATAGGCTGTATAAGGAAGCGGAAGAAGGTACGGAAATCGACTTAAGATCGTGATCGGACTACTAGGGTTAAGGATAGGAAGTTTTTAAATTGCAAGATGACGTTATATTAGAGGTAATACGGTACTTGCAACTCATACCTTTTCTGGCTTAACTATAGCTTTCGATGCATTCCAAGTTGGATCAATCGAATCTGTCCACTTCCGGAACATCATATCCTCTTTTAACTTTACAACGTTATCAAATTCTTCTGGCATGTCATCATATTTGACTATATTCAAAACTGGAATTTGAATCTCCCCAACATTGGAATCTTGTCCATTTAGAAGTTCGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCGATCCTATAAAAGACACT</pcr_primer_p1>
		<pcr_primer_p2>GCTTCCTTATACAGCCTATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CACCGATCCTATAAAAGACACTCCCATGTATTATTTTCAATACTGGAAAATAAAATTGAGCGTGGGATCATCTTCCTCGACGAATTTCGATGTCACCGATTATGGGTGTTACCGAAGCGATGTGTTCAATAGATTGAGAATAGATGCTGTGGAGTACGCTGTGACAAAAATAAGACAATAACTTAAAGATAAGGAAAACAGAAAGGGCAGGATATAAATCCAAAAATAGGCTGTATAAGGAAGC</canonical_amplicon>
		<polymorphic_amplicon>CACCGATCCTATAAAAGACACTCCCATGTATTATTTTCAATACTGGAAAATAAAATTGRGCGTGGGATCATCTTCCTCGACGAATTTCGATGTCACCGATTATGGGTGTTACCGAAGCGATGTGTTCAATAGATTGAGAATAGATGCTGTGGAGTACGCTGTGACAAAAATAAGACAATAACTTAAAGATAAGGAAAACAGAAAGGGCAGGATATAAATCCAAAAATAGGCTGTATAAGGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26238</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>720794</contig_pos>
        <strand></strand>
        <context>ccaatcatta[T/G]aaactttttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTA</left_flank>
        <right_flank>AAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCAGTGAGCCACACTTTAACGGGTCGTCACCAATCGTGAGCGAACACCAGCGAAAACTAAAGAAAACGATGAGAATTTGCCGAGAGAGGAGACGCGTTTTGGCGCGCACACAGTTTCGCGCGCGGATACAGTAATCCACACCTCTTGCACGTGTGTTCGGGGGAGATTTCTCTCCTTTAGACTTGGAAAGAGGATTTTAAAAGAGAAAACACGGTAGAATACCGTACAGGTATACCTTTTTTATTTCAGAAATTTCCCGAAAAATTTCAGCCAATTTTTTTTACAGACAGCGATAGTAGCTTTGCATTTCACTCTAACTATGAAATGACTGAAATTGGGATGACCAACCTAAAATCAACTTCCTGTGAAATTTGGTTGAATAATCTGCCTAAGTTAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAATTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATTTGAAGCGGTTTTGATCACTTGCTCTTGAGATGTGCTCACTGTAGCATAAAAGGTATGGTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGTTTTTTTCATAAGTGTCTTCGGTACATAAAAATGAAAACTTATGAAAAACTTTTTATCCCAATATACAAAGTTTTGTATGTATTTTGTATAACAATTAAAGCCACACATTCTCTCGAAATTTGAGCAAATTTGGATCATTTTGAGCCGAGTTATAGCCAAACTCCAGAACCATACCTTTTATGCTACAGTGAGCACATCTCAAGAGCA</canonical>
            <polymorphic>AACCAGTGAGCCACACTTTAACGGGTCGTCACCAATCGTGAGCGAACACCAGCGAAAACTAAAGAAAACGATGAGAATTTGCCGAGAGAGGAGACGCGTTTTGGCGCGCACACAGTTTCGCGCGCGGATACAGTAATCCACACCTCTTGCACGTGTGTTCGGGGGAGATTTCTCTCCTTTAGACTTGGAAAGAGGATTTTAAAAGAGAAAACACGGTAGAATACCGTACAGGTATACCTTTTTTATTTCAGAAATTTCCCGAAAAATTTCAGCCAATTTTTTTTACAGACAGCGATAGTAGCTTTGCATTTCACTCTAACTATGAAATGACTGAAATTGGGATGACCAACCTAAAATCAACTTCCTGTGAAATTTGGTTGAATAATCTGCCTAAGTTAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTAKAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAATTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATTTGAAGCGGTTTTGATCACTTGCTCTTGAGATGTGCTCACTGTAGCATAAAAGGTATGGTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGTTTTTTTCATAAGTGTCTTCGGTACATAAAAATGAAAACTTATGAAAAACTTTTTATCCCAATATACAAAGTTTTGTATGTATTTTGTATAACAATTAAAGCCACACATTCTCTCGAAATTTGAGCAAATTTGGATCATTTTGAGCCGAGTTATAGCCAAACTCCAGAACCATACCTTTTATGCTACAGTGAGCACATCTCAAGAGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGAGAAGCTAAACCTTCCAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAAACTTGATAAAAATTCTG</pcr_primer_p2>
		<pcr_amplicon_size>962</pcr_amplicon_size>
		<canonical_amplicon>TAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCT</canonical_amplicon>
		<polymorphic_amplicon>TAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTAKAAACTTTTTTGTTAAATGTAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26239</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>720858</contig_pos>
        <strand></strand>
        <context>ttgaaacaat[C/T]aatttttgtg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAAT</left_flank>
        <right_flank>AATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACGATGAGAATTTGCCGAGAGAGGAGACGCGTTTTGGCGCGCACACAGTTTCGCGCGCGGATACAGTAATCCACACCTCTTGCACGTGTGTTCGGGGGAGATTTCTCTCCTTTAGACTTGGAAAGAGGATTTTAAAAGAGAAAACACGGTAGAATACCGTACAGGTATACCTTTTTTATTTCAGAAATTTCCCGAAAAATTTCAGCCAATTTTTTTTACAGACAGCGATAGTAGCTTTGCATTTCACTCTAACTATGAAATGACTGAAATTGGGATGACCAACCTAAAATCAACTTCCTGTGAAATTTGGTTGAATAATCTGCCTAAGTTAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAATTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATTTGAAGCGGTTTTGATCACTTGCTCTTGAGATGTGCTCACTGTAGCATAAAAGGTATGGTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGTTTTTTTCATAAGTGTCTTCGGTACATAAAAATGAAAACTTATGAAAAACTTTTTATCCCAATATACAAAGTTTTGTATGTATTTTGTATAACAATTAAAGCCACACATTCTCTCGAAATTTGAGCAAATTTGGATCATTTTGAGCCGAGTTATAGCCAAACTCCAGAACCATACCTTTTATGCTACAGTGAGCACATCTCAAGAGCAAGTGATCCAAACCGCTTCAAATTTTTTTTGGCATATATTTGATCTACACCAAACATTTTTCATC</canonical>
            <polymorphic>AAAACGATGAGAATTTGCCGAGAGAGGAGACGCGTTTTGGCGCGCACACAGTTTCGCGCGCGGATACAGTAATCCACACCTCTTGCACGTGTGTTCGGGGGAGATTTCTCTCCTTTAGACTTGGAAAGAGGATTTTAAAAGAGAAAACACGGTAGAATACCGTACAGGTATACCTTTTTTATTTCAGAAATTTCCCGAAAAATTTCAGCCAATTTTTTTTACAGACAGCGATAGTAGCTTTGCATTTCACTCTAACTATGAAATGACTGAAATTGGGATGACCAACCTAAAATCAACTTCCTGTGAAATTTGGTTGAATAATCTGCCTAAGTTAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATYAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAATTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATTTGAAGCGGTTTTGATCACTTGCTCTTGAGATGTGCTCACTGTAGCATAAAAGGTATGGTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGTTTTTTTCATAAGTGTCTTCGGTACATAAAAATGAAAACTTATGAAAAACTTTTTATCCCAATATACAAAGTTTTGTATGTATTTTGTATAACAATTAAAGCCACACATTCTCTCGAAATTTGAGCAAATTTGGATCATTTTGAGCCGAGTTATAGCCAAACTCCAGAACCATACCTTTTATGCTACAGTGAGCACATCTCAAGAGCAAGTGATCCAAACCGCTTCAAATTTTTTTTGGCATATATTTGATCTACACCAAACATTTTTCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAGAAGCTAAACCTTCCAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAAACTTGATAAAAATTCTG</pcr_primer_p2>
		<pcr_amplicon_size>962</pcr_amplicon_size>
		<canonical_amplicon>TAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTT</canonical_amplicon>
		<polymorphic_amplicon>TAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATYAATTTTTGTGTCTTCTGAATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26240</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>720916</contig_pos>
        <strand></strand>
        <context>agaaaaaaaa[A/T]tttccgtcag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAA</left_flank>
        <right_flank>TTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCGGATACAGTAATCCACACCTCTTGCACGTGTGTTCGGGGGAGATTTCTCTCCTTTAGACTTGGAAAGAGGATTTTAAAAGAGAAAACACGGTAGAATACCGTACAGGTATACCTTTTTTATTTCAGAAATTTCCCGAAAAATTTCAGCCAATTTTTTTTACAGACAGCGATAGTAGCTTTGCATTTCACTCTAACTATGAAATGACTGAAATTGGGATGACCAACCTAAAATCAACTTCCTGTGAAATTTGGTTGAATAATCTGCCTAAGTTAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAATTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATTTGAAGCGGTTTTGATCACTTGCTCTTGAGATGTGCTCACTGTAGCATAAAAGGTATGGTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGTTTTTTTCATAAGTGTCTTCGGTACATAAAAATGAAAACTTATGAAAAACTTTTTATCCCAATATACAAAGTTTTGTATGTATTTTGTATAACAATTAAAGCCACACATTCTCTCGAAATTTGAGCAAATTTGGATCATTTTGAGCCGAGTTATAGCCAAACTCCAGAACCATACCTTTTATGCTACAGTGAGCACATCTCAAGAGCAAGTGATCCAAACCGCTTCAAATTTTTTTTGGCATATATTTGATCTACACCAAACATTTTTCATCACAAAGCCAATCTTTTAAAAAATTCTGACGGAAATTTTTTTTTCTTCTGGAGTCATCG</canonical>
            <polymorphic>CGCGGATACAGTAATCCACACCTCTTGCACGTGTGTTCGGGGGAGATTTCTCTCCTTTAGACTTGGAAAGAGGATTTTAAAAGAGAAAACACGGTAGAATACCGTACAGGTATACCTTTTTTATTTCAGAAATTTCCCGAAAAATTTCAGCCAATTTTTTTTACAGACAGCGATAGTAGCTTTGCATTTCACTCTAACTATGAAATGACTGAAATTGGGATGACCAACCTAAAATCAACTTCCTGTGAAATTTGGTTGAATAATCTGCCTAAGTTAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAWTTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATTTGAAGCGGTTTTGATCACTTGCTCTTGAGATGTGCTCACTGTAGCATAAAAGGTATGGTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGTTTTTTTCATAAGTGTCTTCGGTACATAAAAATGAAAACTTATGAAAAACTTTTTATCCCAATATACAAAGTTTTGTATGTATTTTGTATAACAATTAAAGCCACACATTCTCTCGAAATTTGAGCAAATTTGGATCATTTTGAGCCGAGTTATAGCCAAACTCCAGAACCATACCTTTTATGCTACAGTGAGCACATCTCAAGAGCAAGTGATCCAAACCGCTTCAAATTTTTTTTGGCATATATTTGATCTACACCAAACATTTTTCATCACAAAGCCAATCTTTTAAAAAATTCTGACGGAAATTTTTTTTTCTTCTGGAGTCATCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>250 212 130 106 100 65 65 26 12 12 12 10</canonical_bands>
                <polymorphic_bands>262 212 130 106 100 65 65 26 12 12 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>194 188 130 100 65 65 60 56 36 26 24 12 12 12 10 10</canonical_bands>
                <polymorphic_bands>194 188 130 100 68 65 65 60 36 26 24 12 12 10 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGAGAAGCTAAACCTTCCAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAAACTTGATAAAAATTCTG</pcr_primer_p2>
		<pcr_amplicon_size>962</pcr_amplicon_size>
		<canonical_amplicon>TAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAATTTCCGTCAGAATTTTTTAAAAG</canonical_amplicon>
		<polymorphic_amplicon>TAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAWTTTCCGTCAGAATTTTTTAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26241</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>720993</contig_pos>
        <strand></strand>
        <context>acagaaaaaa[A/G]ttygaagcgr</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAA</left_flank>
        <right_flank>TTTGAAGCGGTTTTGATCACTTGCTCTTGAGATGTGCTCACTGTAGCATA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAAGAGAAAACACGGTAGAATACCGTACAGGTATACCTTTTTTATTTCAGAAATTTCCCGAAAAATTTCAGCCAATTTTTTTTACAGACAGCGATAGTAGCTTTGCATTTCACTCTAACTATGAAATGACTGAAATTGGGATGACCAACCTAAAATCAACTTCCTGTGAAATTTGGTTGAATAATCTGCCTAAGTTAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAATTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATTTGAAGCGGTTTTGATCACTTGCTCTTGAGATGTGCTCACTGTAGCATAAAAGGTATGGTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGTTTTTTTCATAAGTGTCTTCGGTACATAAAAATGAAAACTTATGAAAAACTTTTTATCCCAATATACAAAGTTTTGTATGTATTTTGTATAACAATTAAAGCCACACATTCTCTCGAAATTTGAGCAAATTTGGATCATTTTGAGCCGAGTTATAGCCAAACTCCAGAACCATACCTTTTATGCTACAGTGAGCACATCTCAAGAGCAAGTGATCCAAACCGCTTCAAATTTTTTTTGGCATATATTTGATCTACACCAAACATTTTTCATCACAAAGCCAATCTTTTAAAAAATTCTGACGGAAATTTTTTTTTCTTCTGGAGTCATCGTCACGTCTGTGAAGATTCAGAAAACACAAAAATTGATTGAGTTTCAAAACACTTACACAACGTTTTGTTGGAAACCC</canonical>
            <polymorphic>TAAAAGAGAAAACACGGTAGAATACCGTACAGGTATACCTTTTTTATTTCAGAAATTTCCCGAAAAATTTCAGCCAATTTTTTTTACAGACAGCGATAGTAGCTTTGCATTTCACTCTAACTATGAAATGACTGAAATTGGGATGACCAACCTAAAATCAACTTCCTGTGAAATTTGGTTGAATAATCTGCCTAAGTTAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAATTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAARTTTGAAGCGGTTTTGATCACTTGCTCTTGAGATGTGCTCACTGTAGCATAAAAGGTATGGTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGTTTTTTTCATAAGTGTCTTCGGTACATAAAAATGAAAACTTATGAAAAACTTTTTATCCCAATATACAAAGTTTTGTATGTATTTTGTATAACAATTAAAGCCACACATTCTCTCGAAATTTGAGCAAATTTGGATCATTTTGAGCCGAGTTATAGCCAAACTCCAGAACCATACCTTTTATGCTACAGTGAGCACATCTCAAGAGCAAGTGATCCAAACCGCTTCAAATTTTTTTTGGCATATATTTGATCTACACCAAACATTTTTCATCACAAAGCCAATCTTTTAAAAAATTCTGACGGAAATTTTTTTTTCTTCTGGAGTCATCGTCACGTCTGTGAAGATTCAGAAAACACAAAAATTGATTGAGTTTCAAAACACTTACACAACGTTTTGTTGGAAACCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>250 212 106 103 100 65 65 53 12 12 12 10</canonical_bands>
                <polymorphic_bands>277 250 106 103 100 65 53 12 12 12 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>194 188 100 65 65 60 56 56 53 47 36 24 12 12 12 10 10</canonical_bands>
                <polymorphic_bands>253 194 100 65 60 56 56 53 47 36 24 12 12 12 10 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGAGAAGCTAAACCTTCCAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAAACTTGATAAAAATTCTG</pcr_primer_p2>
		<pcr_amplicon_size>962</pcr_amplicon_size>
		<canonical_amplicon>TAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAATTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATTTGAAGCGGTTTTGATCACTTG</canonical_amplicon>
		<polymorphic_amplicon>TAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAATTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAARTTTGAAGCGGTTTTGATCACTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26242</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>720996</contig_pos>
        <strand></strand>
        <context>gaaaaaartt[T/C]gaagcgrttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATT</left_flank>
        <right_flank>GAAGCGGTTTTGATCACTTGCTCTTGAGATGTGCTCACTGTAGCATAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAGAAAACACGGTAGAATACCGTACAGGTATACCTTTTTTATTTCAGAAATTTCCCGAAAAATTTCAGCCAATTTTTTTTACAGACAGCGATAGTAGCTTTGCATTTCACTCTAACTATGAAATGACTGAAATTGGGATGACCAACCTAAAATCAACTTCCTGTGAAATTTGGTTGAATAATCTGCCTAAGTTAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAATTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATTTGAAGCGGTTTTGATCACTTGCTCTTGAGATGTGCTCACTGTAGCATAAAAGGTATGGTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGTTTTTTTCATAAGTGTCTTCGGTACATAAAAATGAAAACTTATGAAAAACTTTTTATCCCAATATACAAAGTTTTGTATGTATTTTGTATAACAATTAAAGCCACACATTCTCTCGAAATTTGAGCAAATTTGGATCATTTTGAGCCGAGTTATAGCCAAACTCCAGAACCATACCTTTTATGCTACAGTGAGCACATCTCAAGAGCAAGTGATCCAAACCGCTTCAAATTTTTTTTGGCATATATTTGATCTACACCAAACATTTTTCATCACAAAGCCAATCTTTTAAAAAATTCTGACGGAAATTTTTTTTTCTTCTGGAGTCATCGTCACGTCTGTGAAGATTCAGAAAACACAAAAATTGATTGAGTTTCAAAACACTTACACAACGTTTTGTTGGAAACCCAGC</canonical>
            <polymorphic>AAGAGAAAACACGGTAGAATACCGTACAGGTATACCTTTTTTATTTCAGAAATTTCCCGAAAAATTTCAGCCAATTTTTTTTACAGACAGCGATAGTAGCTTTGCATTTCACTCTAACTATGAAATGACTGAAATTGGGATGACCAACCTAAAATCAACTTCCTGTGAAATTTGGTTGAATAATCTGCCTAAGTTAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAATTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATTYGAAGCGGTTTTGATCACTTGCTCTTGAGATGTGCTCACTGTAGCATAAAAGGTATGGTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGTTTTTTTCATAAGTGTCTTCGGTACATAAAAATGAAAACTTATGAAAAACTTTTTATCCCAATATACAAAGTTTTGTATGTATTTTGTATAACAATTAAAGCCACACATTCTCTCGAAATTTGAGCAAATTTGGATCATTTTGAGCCGAGTTATAGCCAAACTCCAGAACCATACCTTTTATGCTACAGTGAGCACATCTCAAGAGCAAGTGATCCAAACCGCTTCAAATTTTTTTTGGCATATATTTGATCTACACCAAACATTTTTCATCACAAAGCCAATCTTTTAAAAAATTCTGACGGAAATTTTTTTTTCTTCTGGAGTCATCGTCACGTCTGTGAAGATTCAGAAAACACAAAAATTGATTGAGTTTCAAAACACTTACACAACGTTTTGTTGGAAACCCAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>250 212 106 106 100 65 65 50 12 12 12 10</canonical_bands>
                <polymorphic_bands>277 250 106 106 100 65 50 12 12 12 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGAGAAGCTAAACCTTCCAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAAACTTGATAAAAATTCTG</pcr_primer_p2>
		<pcr_amplicon_size>962</pcr_amplicon_size>
		<canonical_amplicon>TAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAATTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATTTGAAGCGGTTTTGATCACTTGCTC</canonical_amplicon>
		<polymorphic_amplicon>TAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAATTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATTYGAAGCGGTTTTGATCACTTGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26243</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>721003</contig_pos>
        <strand></strand>
        <context>rttygaagcg[G/A]tttkgawcac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATTTGAAGCG</left_flank>
        <right_flank>TTTTGATCACTTGCTCTTGAGATGTGCTCACTGTAGCATAAAAGGTATGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACACGGTAGAATACCGTACAGGTATACCTTTTTTATTTCAGAAATTTCCCGAAAAATTTCAGCCAATTTTTTTTACAGACAGCGATAGTAGCTTTGCATTTCACTCTAACTATGAAATGACTGAAATTGGGATGACCAACCTAAAATCAACTTCCTGTGAAATTTGGTTGAATAATCTGCCTAAGTTAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAATTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATTTGAAGCGGTTTTGATCACTTGCTCTTGAGATGTGCTCACTGTAGCATAAAAGGTATGGTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGTTTTTTTCATAAGTGTCTTCGGTACATAAAAATGAAAACTTATGAAAAACTTTTTATCCCAATATACAAAGTTTTGTATGTATTTTGTATAACAATTAAAGCCACACATTCTCTCGAAATTTGAGCAAATTTGGATCATTTTGAGCCGAGTTATAGCCAAACTCCAGAACCATACCTTTTATGCTACAGTGAGCACATCTCAAGAGCAAGTGATCCAAACCGCTTCAAATTTTTTTTGGCATATATTTGATCTACACCAAACATTTTTCATCACAAAGCCAATCTTTTAAAAAATTCTGACGGAAATTTTTTTTTCTTCTGGAGTCATCGTCACGTCTGTGAAGATTCAGAAAACACAAAAATTGATTGAGTTTCAAAACACTTACACAACGTTTTGTTGGAAACCCAGCTACATTT</canonical>
            <polymorphic>AACACGGTAGAATACCGTACAGGTATACCTTTTTTATTTCAGAAATTTCCCGAAAAATTTCAGCCAATTTTTTTTACAGACAGCGATAGTAGCTTTGCATTTCACTCTAACTATGAAATGACTGAAATTGGGATGACCAACCTAAAATCAACTTCCTGTGAAATTTGGTTGAATAATCTGCCTAAGTTAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAATTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATTTGAAGCGRTTTTGATCACTTGCTCTTGAGATGTGCTCACTGTAGCATAAAAGGTATGGTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGTTTTTTTCATAAGTGTCTTCGGTACATAAAAATGAAAACTTATGAAAAACTTTTTATCCCAATATACAAAGTTTTGTATGTATTTTGTATAACAATTAAAGCCACACATTCTCTCGAAATTTGAGCAAATTTGGATCATTTTGAGCCGAGTTATAGCCAAACTCCAGAACCATACCTTTTATGCTACAGTGAGCACATCTCAAGAGCAAGTGATCCAAACCGCTTCAAATTTTTTTTGGCATATATTTGATCTACACCAAACATTTTTCATCACAAAGCCAATCTTTTAAAAAATTCTGACGGAAATTTTTTTTTCTTCTGGAGTCATCGTCACGTCTGTGAAGATTCAGAAAACACAAAAATTGATTGAGTTTCAAAACACTTACACAACGTTTTGTTGGAAACCCAGCTACATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAGAAGCTAAACCTTCCAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAAACTTGATAAAAATTCTG</pcr_primer_p2>
		<pcr_amplicon_size>962</pcr_amplicon_size>
		<canonical_amplicon>TAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAATTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATTTGAAGCGGTTTTGATCACTTGCTCTTGAGAT</canonical_amplicon>
		<polymorphic_amplicon>TAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAATTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATTTGAAGCGRTTTTGATCACTTGCTCTTGAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26244</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>721007</contig_pos>
        <strand></strand>
        <context>gaagcgrttt[T/G]gawcacttkc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATTTGAAGCGGTTT</left_flank>
        <right_flank>GATCACTTGCTCTTGAGATGTGCTCACTGTAGCATAAAAGGTATGGTTCT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGTAGAATACCGTACAGGTATACCTTTTTTATTTCAGAAATTTCCCGAAAAATTTCAGCCAATTTTTTTTACAGACAGCGATAGTAGCTTTGCATTTCACTCTAACTATGAAATGACTGAAATTGGGATGACCAACCTAAAATCAACTTCCTGTGAAATTTGGTTGAATAATCTGCCTAAGTTAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAATTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATTTGAAGCGGTTTTGATCACTTGCTCTTGAGATGTGCTCACTGTAGCATAAAAGGTATGGTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGTTTTTTTCATAAGTGTCTTCGGTACATAAAAATGAAAACTTATGAAAAACTTTTTATCCCAATATACAAAGTTTTGTATGTATTTTGTATAACAATTAAAGCCACACATTCTCTCGAAATTTGAGCAAATTTGGATCATTTTGAGCCGAGTTATAGCCAAACTCCAGAACCATACCTTTTATGCTACAGTGAGCACATCTCAAGAGCAAGTGATCCAAACCGCTTCAAATTTTTTTTGGCATATATTTGATCTACACCAAACATTTTTCATCACAAAGCCAATCTTTTAAAAAATTCTGACGGAAATTTTTTTTTCTTCTGGAGTCATCGTCACGTCTGTGAAGATTCAGAAAACACAAAAATTGATTGAGTTTCAAAACACTTACACAACGTTTTGTTGGAAACCCAGCTACATTTAACA</canonical>
            <polymorphic>CGGTAGAATACCGTACAGGTATACCTTTTTTATTTCAGAAATTTCCCGAAAAATTTCAGCCAATTTTTTTTACAGACAGCGATAGTAGCTTTGCATTTCACTCTAACTATGAAATGACTGAAATTGGGATGACCAACCTAAAATCAACTTCCTGTGAAATTTGGTTGAATAATCTGCCTAAGTTAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAATTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATTTGAAGCGGTTTKGATCACTTGCTCTTGAGATGTGCTCACTGTAGCATAAAAGGTATGGTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGTTTTTTTCATAAGTGTCTTCGGTACATAAAAATGAAAACTTATGAAAAACTTTTTATCCCAATATACAAAGTTTTGTATGTATTTTGTATAACAATTAAAGCCACACATTCTCTCGAAATTTGAGCAAATTTGGATCATTTTGAGCCGAGTTATAGCCAAACTCCAGAACCATACCTTTTATGCTACAGTGAGCACATCTCAAGAGCAAGTGATCCAAACCGCTTCAAATTTTTTTTGGCATATATTTGATCTACACCAAACATTTTTCATCACAAAGCCAATCTTTTAAAAAATTCTGACGGAAATTTTTTTTTCTTCTGGAGTCATCGTCACGTCTGTGAAGATTCAGAAAACACAAAAATTGATTGAGTTTCAAAACACTTACACAACGTTTTGTTGGAAACCCAGCTACATTTAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGAGAAGCTAAACCTTCCAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAAACTTGATAAAAATTCTG</pcr_primer_p2>
		<pcr_amplicon_size>962</pcr_amplicon_size>
		<canonical_amplicon>TAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAATTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATTTGAAGCGGTTTTGATCACTTGCTCTTGAGATGTGC</canonical_amplicon>
		<polymorphic_amplicon>TAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAATTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATTTGAAGCGGTTTKGATCACTTGCTCTTGAGATGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26245</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>721010</contig_pos>
        <strand></strand>
        <context>gcgrtttkga[T/A]cacttkctct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGTTTAGCGTGAATCAAATATATACAGAAAAAAATTTGAAGCGGTTTTGA</left_flank>
        <right_flank>CACTTGCTCTTGAGATGTGCTCACTGTAGCATAAAAGGTATGGTTCTGGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGAATACCGTACAGGTATACCTTTTTTATTTCAGAAATTTCCCGAAAAATTTCAGCCAATTTTTTTTACAGACAGCGATAGTAGCTTTGCATTTCACTCTAACTATGAAATGACTGAAATTGGGATGACCAACCTAAAATCAACTTCCTGTGAAATTTGGTTGAATAATCTGCCTAAGTTAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAATTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATTTGAAGCGGTTTTGATCACTTGCTCTTGAGATGTGCTCACTGTAGCATAAAAGGTATGGTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGTTTTTTTCATAAGTGTCTTCGGTACATAAAAATGAAAACTTATGAAAAACTTTTTATCCCAATATACAAAGTTTTGTATGTATTTTGTATAACAATTAAAGCCACACATTCTCTCGAAATTTGAGCAAATTTGGATCATTTTGAGCCGAGTTATAGCCAAACTCCAGAACCATACCTTTTATGCTACAGTGAGCACATCTCAAGAGCAAGTGATCCAAACCGCTTCAAATTTTTTTTGGCATATATTTGATCTACACCAAACATTTTTCATCACAAAGCCAATCTTTTAAAAAATTCTGACGGAAATTTTTTTTTCTTCTGGAGTCATCGTCACGTCTGTGAAGATTCAGAAAACACAAAAATTGATTGAGTTTCAAAACACTTACACAACGTTTTGTTGGAAACCCAGCTACATTTAACAAAA</canonical>
            <polymorphic>TAGAATACCGTACAGGTATACCTTTTTTATTTCAGAAATTTCCCGAAAAATTTCAGCCAATTTTTTTTACAGACAGCGATAGTAGCTTTGCATTTCACTCTAACTATGAAATGACTGAAATTGGGATGACCAACCTAAAATCAACTTCCTGTGAAATTTGGTTGAATAATCTGCCTAAGTTAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAATTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATTTGAAGCGGTTTTGAWCACTTGCTCTTGAGATGTGCTCACTGTAGCATAAAAGGTATGGTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGTTTTTTTCATAAGTGTCTTCGGTACATAAAAATGAAAACTTATGAAAAACTTTTTATCCCAATATACAAAGTTTTGTATGTATTTTGTATAACAATTAAAGCCACACATTCTCTCGAAATTTGAGCAAATTTGGATCATTTTGAGCCGAGTTATAGCCAAACTCCAGAACCATACCTTTTATGCTACAGTGAGCACATCTCAAGAGCAAGTGATCCAAACCGCTTCAAATTTTTTTTGGCATATATTTGATCTACACCAAACATTTTTCATCACAAAGCCAATCTTTTAAAAAATTCTGACGGAAATTTTTTTTTCTTCTGGAGTCATCGTCACGTCTGTGAAGATTCAGAAAACACAAAAATTGATTGAGTTTCAAAACACTTACACAACGTTTTGTTGGAAACCCAGCTACATTTAACAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>497 212 176 78 37</canonical_bands>
                <polymorphic_bands>709 176 78 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGAGAAGCTAAACCTTCCAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAAACTTGATAAAAATTCTG</pcr_primer_p2>
		<pcr_amplicon_size>962</pcr_amplicon_size>
		<canonical_amplicon>TAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAATTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATTTGAAGCGGTTTTGATCACTTGCTCTTGAGATGTGCTCA</canonical_amplicon>
		<polymorphic_amplicon>TAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAATTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATTTGAAGCGGTTTTGAWCACTTGCTCTTGAGATGTGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26246</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>721016</contig_pos>
        <strand></strand>
        <context>tkgawcactt[G/T]ctcttgagat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCGTGAATCAAATATATACAGAAAAAAATTTGAAGCGGTTTTGATCACTT</left_flank>
        <right_flank>CTCTTGAGATGTGCTCACTGTAGCATAAAAGGTATGGTTCTGGAGTTTGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCGTACAGGTATACCTTTTTTATTTCAGAAATTTCCCGAAAAATTTCAGCCAATTTTTTTTACAGACAGCGATAGTAGCTTTGCATTTCACTCTAACTATGAAATGACTGAAATTGGGATGACCAACCTAAAATCAACTTCCTGTGAAATTTGGTTGAATAATCTGCCTAAGTTAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAATTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATTTGAAGCGGTTTTGATCACTTGCTCTTGAGATGTGCTCACTGTAGCATAAAAGGTATGGTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGTTTTTTTCATAAGTGTCTTCGGTACATAAAAATGAAAACTTATGAAAAACTTTTTATCCCAATATACAAAGTTTTGTATGTATTTTGTATAACAATTAAAGCCACACATTCTCTCGAAATTTGAGCAAATTTGGATCATTTTGAGCCGAGTTATAGCCAAACTCCAGAACCATACCTTTTATGCTACAGTGAGCACATCTCAAGAGCAAGTGATCCAAACCGCTTCAAATTTTTTTTGGCATATATTTGATCTACACCAAACATTTTTCATCACAAAGCCAATCTTTTAAAAAATTCTGACGGAAATTTTTTTTTCTTCTGGAGTCATCGTCACGTCTGTGAAGATTCAGAAAACACAAAAATTGATTGAGTTTCAAAACACTTACACAACGTTTTGTTGGAAACCCAGCTACATTTAACAAAAAAGTTT</canonical>
            <polymorphic>ACCGTACAGGTATACCTTTTTTATTTCAGAAATTTCCCGAAAAATTTCAGCCAATTTTTTTTACAGACAGCGATAGTAGCTTTGCATTTCACTCTAACTATGAAATGACTGAAATTGGGATGACCAACCTAAAATCAACTTCCTGTGAAATTTGGTTGAATAATCTGCCTAAGTTAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAATTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATTTGAAGCGGTTTTGATCACTTKCTCTTGAGATGTGCTCACTGTAGCATAAAAGGTATGGTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGTTTTTTTCATAAGTGTCTTCGGTACATAAAAATGAAAACTTATGAAAAACTTTTTATCCCAATATACAAAGTTTTGTATGTATTTTGTATAACAATTAAAGCCACACATTCTCTCGAAATTTGAGCAAATTTGGATCATTTTGAGCCGAGTTATAGCCAAACTCCAGAACCATACCTTTTATGCTACAGTGAGCACATCTCAAGAGCAAGTGATCCAAACCGCTTCAAATTTTTTTTGGCATATATTTGATCTACACCAAACATTTTTCATCACAAAGCCAATCTTTTAAAAAATTCTGACGGAAATTTTTTTTTCTTCTGGAGTCATCGTCACGTCTGTGAAGATTCAGAAAACACAAAAATTGATTGAGTTTCAAAACACTTACACAACGTTTTGTTGGAAACCCAGCTACATTTAACAAAAAAGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAGAAGCTAAACCTTCCAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAAACTTGATAAAAATTCTG</pcr_primer_p2>
		<pcr_amplicon_size>962</pcr_amplicon_size>
		<canonical_amplicon>TAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAATTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATTTGAAGCGGTTTTGATCACTTGCTCTTGAGATGTGCTCACTGTAG</canonical_amplicon>
		<polymorphic_amplicon>TAGAGAAGCTAAACCTTCCAAGTTTAAAGGTACAGTGGCGAACGTTAGTGAGTGTCCCTCTATACTTTTGTTCATAACTTTGCTCAAACTTGTCCAATCATTATAAACTTTTTTGTTAAATGTAGCTGGGTTTCCAACAAAACGTTGTTTAAGTTTTTTGAAACAATCAATTTTTGTGTCTTCTGAATCTTCACAGACGTGACGATGACTCCAGAAGAAAAAAAAATTTCCGTCAGAATTTTTTAAAAGATTGGCTTTGTAATGAAAAATGTTTAGCGTGAATCAAATATATACAGAAAAAAATTTGAAGCGGTTTTGATCACTTKCTCTTGAGATGTGCTCACTGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26247</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>876892</contig_pos>
        <strand>+</strand>
        <context>AAAATTTCGA[A/C]GAAATTTTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACGGTATTCAGAATTTAGTGAATTAGAAAATCAAATTTTCAAAATTTCGA</left_flank>
        <right_flank>GAAATTTTTACTTTTATTTGAATAATGCACATTGAATAATTTACGAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAAATTTGATGTTCAGAAATTCAGGAATTCGTATACCATAAAAACTCTATTAGATAGCTATGGCACTGTATTGTTTGGAGGTGGTCTGGGGTGGCACTGTATTAGGGAGTGGCATTCAATTAAAGGCTGGCACTTTATTGTTCGGAGTCGATTTCTACTGAAACTCATCACAAAAGCACTCGATATTCAACTTTTTCATAAAATGACTTTAGATGTTCTCTTGATTTTTCGTCTTTTTTAAAGAGAATTTCGGAGTCTGGTATTATCCTGAAGCATTTTTTGACAAATACAGTACCTATTTTAAGCTTGAAAAACGCCAGAATACCAAAAAAAGATTTTTTGGGTTATTCTTTTGGGTTCCATTTTTACCACAGTGACATAAAATCCGCAGTGGCATTATATTAGGGGCTGGCATTCAATTAGGGGTGGCTATCTAATAGAGTTCTAACGGTATTCAGAATTTAGTGAATTAGAAAATCAAATTTTCAAAATTTCGACGAAATTTTTACTTTTATTTGAATAATGCACATTGAATAATTTACGAAATTTGATTTTTTTTTCGGATTTGTGGGCGCCTTTTGCGATACGGTGAAAAATTAGGTTTTTCGGCAATGAAAAATTCTGGGTCAAAAATTTTGATTTCAAGATAAGTAACAATTATGAAGGAGCAAAAACACACAAAATGATCCTAAACGCGTCAAATTTGGTTAAGAATTGACGCAGCACAGGTAAAATGCGAACGGACCCGTTACGGACGCTCCGCGTTCGCGCGCGGTTGAAATAGGAACCGTATGTGGACCGTAAGCGAACCGTTTCGAGCAAAACACAGTACATTAGGTTTCTCCGTATTCTGTCCGATCGCAAATAATGAACAAACGGATCTGTACGCGATCTTAAATTGAATTTAAGTTCGCGTACGAATCCGTTCGTTCATTATTCGCGATCGGATCGGATACGGAGTTCGCGAACAGACAGAATACGGAGTAACCCGCAATAAT</canonical>
            <polymorphic>TTTAAATTTGATGTTCAGAAATTCAGGAATTCGTATACCATAAAAACTCTATTAGATAGCTATGGCACTGTATTGTTTGGAGGTGGTCTGGGGTGGCACTGTATTAGGGAGTGGCATTCAATTAAAGGCTGGCACTTTATTGTTCGGAGTCGATTTCTACTGAAACTCATCACAAAAGCACTCGATATTCAACTTTTTCATAAAATGACTTTAGATGTTCTCTTGATTTTTCGTCTTTTTTAAAGAGAATTTCGGAGTCTGGTATTATCCTGAAGCATTTTTTGACAAATACAGTACCTATTTTAAGCTTGAAAAACGCCAGAATACCAAAAAAAGATTTTTTGGGTTATTCTTTTGGGTTCCATTTTTACCACAGTGACATAAAATCCGCAGTGGCATTATATTAGGGGCTGGCATTCAATTAGGGGTGGCTATCTAATAGAGTTCTAACGGTATTCAGAATTTAGTGAATTAGAAAATCAAATTTTCAAAATTTCGAMGAAATTTTTACTTTTATTTGAATAATGCACATTGAATAATTTACGAAATTTGATTTTTTTTTCGGATTTGTGGGCGCCTTTTGCGATACGGTGAAAAATTAGGTTTTTCGGCAATGAAAAATTCTGGGTCAAAAATTTTGATTTCAAGATAAGTAACAATTATGAAGGAGCAAAAACACACAAAATGATCCTAAACGCGTCAAATTTGGTTAAGAATTGACGCAGCACAGGTAAAATGCGAACGGACCCGTTACGGACGCTCCGCGTTCGCGCGCGGTTGAAATAGGAACCGTATGTGGACCGTAAGCGAACCGTTTCGAGCAAAACACAGTACATTAGGTTTCTCCGTATTCTGTCCGATCGCAAATAATGAACAAACGGATCTGTACGCGATCTTAAATTGAATTTAAGTTCGCGTACGAATCCGTTCGTTCATTATTCGCGATCGGATCGGATACGGAGTTCGCGAACAGACAGAATACGGAGTAACCCGCAATAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGTTTAAATTTGATGTTCAGA</pcr_primer_p1>
		<pcr_primer_p2>CACATACGGTTCCTATTTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>802</pcr_amplicon_size>
		<canonical_amplicon>ACGAAATTTTTACTTTTATTTGAATAATGCACATTGAATAATTTACGAAATTTGATTTTTTTTTCGGATTTGTGGGCGCCTTTTGCGATACGGTGAAAAATTAGGTTTTTCGGCAATGAAAAATTCTGGGTCAAAAATTTTGATTTCAAGATAAGTAACAATTATGAAGGAGCAAAAACACACAAAATGATCCTAAACGCGTCAAATTTGGTTAAGAATTGACGCAGCACAGGTAAAATGCGAACGGACCCGTTACGGACGCTCCGCGTTCGCGCGCGGTTGAAATAGGAACCGTATGTG</canonical_amplicon>
		<polymorphic_amplicon>AMGAAATTTTTACTTTTATTTGAATAATGCACATTGAATAATTTACGAAATTTGATTTTTTTTTCGGATTTGTGGGCGCCTTTTGCGATACGGTGAAAAATTAGGTTTTTCGGCAATGAAAAATTCTGGGTCAAAAATTTTGATTTCAAGATAAGTAACAATTATGAAGGAGCAAAAACACACAAAATGATCCTAAACGCGTCAAATTTGGTTAAGAATTGACGCAGCACAGGTAAAATGCGAACGGACCCGTTACGGACGCTCCGCGTTCGCGCGCGGTTGAAATAGGAACCGTATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26248</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>877138</contig_pos>
        <strand>+</strand>
        <context>ATGCGAACGG[A/G]CCCGTTACGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCGTCAAATTTGGTTAAGAATTGACGCAGCACAGGTAAAATGCGAACGG</left_flank>
        <right_flank>CCCGTTACGGACGCTCCGCGTTCGCGCGCGGTTGAAATAGGAACCGTATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTTCGGAGTCTGGTATTATCCTGAAGCATTTTTTGACAAATACAGTACCTATTTTAAGCTTGAAAAACGCCAGAATACCAAAAAAAGATTTTTTGGGTTATTCTTTTGGGTTCCATTTTTACCACAGTGACATAAAATCCGCAGTGGCATTATATTAGGGGCTGGCATTCAATTAGGGGTGGCTATCTAATAGAGTTCTAACGGTATTCAGAATTTAGTGAATTAGAAAATCAAATTTTCAAAATTTCGACGAAATTTTTACTTTTATTTGAATAATGCACATTGAATAATTTACGAAATTTGATTTTTTTTTCGGATTTGTGGGCGCCTTTTGCGATACGGTGAAAAATTAGGTTTTTCGGCAATGAAAAATTCTGGGTCAAAAATTTTGATTTCAAGATAAGTAACAATTATGAAGGAGCAAAAACACACAAAATGATCCTAAACGCGTCAAATTTGGTTAAGAATTGACGCAGCACAGGTAAAATGCGAACGGACCCGTTACGGACGCTCCGCGTTCGCGCGCGGTTGAAATAGGAACCGTATGTGGACCGTAAGCGAACCGTTTCGAGCAAAACACAGTACATTAGGTTTCTCCGTATTCTGTCCGATCGCAAATAATGAACAAACGGATCTGTACGCGATCTTAAATTGAATTTAAGTTCGCGTACGAATCCGTTCGTTCATTATTCGCGATCGGATCGGATACGGAGTTCGCGAACAGACAGAATACGGAGTAACCCGCAATAATGTGCTGTTTTTAGCTGGAAACGGTTCGCGTATGGTCCGCATACGGTTCCTATTTCAACCGCGCGCGAACGCGGAGCGTCCGTAACGGATTGTTCGCGAATCACCTATGAGGAGATACATTTTTCAGAAAATGAACTGAAAAATTCAATTTTTCGAGGTTTTTGGGGATTTATTAAAATACCGTCCATCATAAATTTTTCTAATTAAGTAACTTTTGTTCAGAATTTTCTCGCAAACATTTTGATAT</canonical>
            <polymorphic>GAATTTCGGAGTCTGGTATTATCCTGAAGCATTTTTTGACAAATACAGTACCTATTTTAAGCTTGAAAAACGCCAGAATACCAAAAAAAGATTTTTTGGGTTATTCTTTTGGGTTCCATTTTTACCACAGTGACATAAAATCCGCAGTGGCATTATATTAGGGGCTGGCATTCAATTAGGGGTGGCTATCTAATAGAGTTCTAACGGTATTCAGAATTTAGTGAATTAGAAAATCAAATTTTCAAAATTTCGACGAAATTTTTACTTTTATTTGAATAATGCACATTGAATAATTTACGAAATTTGATTTTTTTTTCGGATTTGTGGGCGCCTTTTGCGATACGGTGAAAAATTAGGTTTTTCGGCAATGAAAAATTCTGGGTCAAAAATTTTGATTTCAAGATAAGTAACAATTATGAAGGAGCAAAAACACACAAAATGATCCTAAACGCGTCAAATTTGGTTAAGAATTGACGCAGCACAGGTAAAATGCGAACGGRCCCGTTACGGACGCTCCGCGTTCGCGCGCGGTTGAAATAGGAACCGTATGTGGACCGTAAGCGAACCGTTTCGAGCAAAACACAGTACATTAGGTTTCTCCGTATTCTGTCCGATCGCAAATAATGAACAAACGGATCTGTACGCGATCTTAAATTGAATTTAAGTTCGCGTACGAATCCGTTCGTTCATTATTCGCGATCGGATCGGATACGGAGTTCGCGAACAGACAGAATACGGAGTAACCCGCAATAATGTGCTGTTTTTAGCTGGAAACGGTTCGCGTATGGTCCGCATACGGTTCCTATTTCAACCGCGCGCGAACGCGGAGCGTCCGTAACGGATTGTTCGCGAATCACCTATGAGGAGATACATTTTTCAGAAAATGAACTGAAAAATTCAATTTTTCGAGGTTTTTGGGGATTTATTAAAATACCGTCCATCATAAATTTTTCTAATTAAGTAACTTTTGTTCAGAATTTTCTCGCAAACATTTTGATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>498 235 213 54</canonical_bands>
                <polymorphic_bands>552 235 213</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAATTTAGTGAATTAGAAAATCAA</pcr_primer_p1>
		<pcr_primer_p2>CACATACGGTTCCTATTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>341</pcr_amplicon_size>
		<canonical_amplicon>CAGAATTTAGTGAATTAGAAAATCAAATTTTCAAAATTTCGACGAAATTTTTACTTTTATTTGAATAATGCACATTGAATAATTTACGAAATTTGATTTTTTTTTCGGATTTGTGGGCGCCTTTTGCGATACGGTGAAAAATTAGGTTTTTCGGCAATGAAAAATTCTGGGTCAAAAATTTTGATTTCAAGATAAGTAACAATTATGAAGGAGCAAAAACACACAAAATGATCCTAAACGCGTCAAATTTGGTTAAGAATTGACGCAGCACAGGTAAAATGCGAACGGACCCGTTACGGACGCTCCGCGTTCGCGCGCGGTTGAAATAGGAACCGTATGTG</canonical_amplicon>
		<polymorphic_amplicon>CAGAATTTAGTGAATTAGAAAATCAAATTTTCAAAATTTCGACGAAATTTTTACTTTTATTTGAATAATGCACATTGAATAATTTACGAAATTTGATTTTTTTTTCGGATTTGTGGGCGCCTTTTGCGATACGGTGAAAAATTAGGTTTTTCGGCAATGAAAAATTCTGGGTCAAAAATTTTGATTTCAAGATAAGTAACAATTATGAAGGAGCAAAAACACACAAAATGATCCTAAACGCGTCAAATTTGGTTAAGAATTGACGCAGCACAGGTAAAATGCGAACGGRCCCGTTACGGACGCTCCGCGTTCGCGCGCGGTTGAAATAGGAACCGTATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26249</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>957287</contig_pos>
        <strand>+</strand>
        <context>GTGATACAAA[A/G]TTATMAAYCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAA</left_flank>
        <right_flank>TTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTGGATTAAGTGTTTTTTTTCTTGTCAAAAATATCTTCTCGAATTTTGTGTCTTTTTTAACTTTCTGTATAAATTTGTTTGTTTTTCAATTTCTTATCTGTGGAAAATGTGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTT</canonical>
            <polymorphic>TTTTTGGATTAAGTGTTTTTTTTCTTGTCAAAAATATCTTCTCGAATTTTGTGTCTTTTTTAACTTTCTGTATAAATTTGTTTGTTTTTCAATTTCTTATCTGTGGAAAATGTGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAARTTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>213 125 118 116 104 62 54 44 30 29 29 20 17 16 12 11</canonical_bands>
                <polymorphic_bands>242 125 118 116 104 62 54 44 30 29 20 17 16 12 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCGGTTATAAATACCATCTCTT</pcr_primer_p1>
		<pcr_primer_p2>ACGGATTCAAAGGTTAGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</canonical_amplicon>
		<polymorphic_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAARTTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26250</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>957292</contig_pos>
        <strand>+</strand>
        <context>ACAAARTTAT[A/C]AAYCTCATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTAT</left_flank>
        <right_flank>AACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAA</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATTAAGTGTTTTTTTTCTTGTCAAAAATATCTTCTCGAATTTTGTGTCTTTTTTAACTTTCTGTATAAATTTGTTTGTTTTTCAATTTCTTATCTGTGGAAAATGTGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATC</canonical>
            <polymorphic>GGATTAAGTGTTTTTTTTCTTGTCAAAAATATCTTCTCGAATTTTGTGTCTTTTTTAACTTTCTGTATAAATTTGTTTGTTTTTCAATTTCTTATCTGTGGAAAATGTGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATMAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCGGTTATAAATACCATCTCTT</pcr_primer_p1>
		<pcr_primer_p2>ACGGATTCAAAGGTTAGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</canonical_amplicon>
		<polymorphic_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATMAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26251</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>957295</contig_pos>
        <strand>+</strand>
        <context>AARTTATMAA[C/T]CTCATTTYCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAA</left_flank>
        <right_flank>CTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATC</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAGTGTTTTTTTTCTTGTCAAAAATATCTTCTCGAATTTTGTGTCTTTTTTAACTTTCTGTATAAATTTGTTTGTTTTTCAATTTCTTATCTGTGGAAAATGTGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTAC</canonical>
            <polymorphic>TTAAGTGTTTTTTTTCTTGTCAAAAATATCTTCTCGAATTTTGTGTCTTTTTTAACTTTCTGTATAAATTTGTTTGTTTTTCAATTTCTTATCTGTGGAAAATGTGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAAYCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCGGTTATAAATACCATCTCTT</pcr_primer_p1>
		<pcr_primer_p2>ACGGATTCAAAGGTTAGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</canonical_amplicon>
		<polymorphic_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAAYCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26252</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>957303</contig_pos>
        <strand>+</strand>
        <context>AAYCTCATTT[C/T]CTTTYSAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTT</left_flank>
        <right_flank>CTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTT</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTCTTGTCAAAAATATCTTCTCGAATTTTGTGTCTTTTTTAACTTTCTGTATAAATTTGTTTGTTTTTCAATTTCTTATCTGTGGAAAATGTGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTAC</canonical>
            <polymorphic>TTTTTTTCTTGTCAAAAATATCTTCTCGAATTTTGTGTCTTTTTTAACTTTCTGTATAAATTTGTTTGTTTTTCAATTTCTTATCTGTGGAAAATGTGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTYCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCGGTTATAAATACCATCTCTT</pcr_primer_p1>
		<pcr_primer_p2>ACGGATTCAAAGGTTAGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</canonical_amplicon>
		<polymorphic_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTYCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26253</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>957308</contig_pos>
        <strand>+</strand>
        <context>CATTTYCTTT[C/T]SAAATYAAYT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTT</left_flank>
        <right_flank>GAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTGTCAAAAATATCTTCTCGAATTTTGTGTCTTTTTTAACTTTCTGTATAAATTTGTTTGTTTTTCAATTTCTTATCTGTGGAAAATGTGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATG</canonical>
            <polymorphic>TTCTTGTCAAAAATATCTTCTCGAATTTTGTGTCTTTTTTAACTTTCTGTATAAATTTGTTTGTTTTTCAATTTCTTATCTGTGGAAAATGTGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTYGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>444 351 127 56 22</canonical_bands>
                <polymorphic_bands>444 351 183 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCGGTTATAAATACCATCTCTT</pcr_primer_p1>
		<pcr_primer_p2>ACGGATTCAAAGGTTAGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</canonical_amplicon>
		<polymorphic_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTYGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26254</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>957309</contig_pos>
        <strand>+</strand>
        <context>ATTTYCTTTY[C/G]AAATYAAYTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTC</left_flank>
        <right_flank>AAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTGTCAAAAATATCTTCTCGAATTTTGTGTCTTTTTTAACTTTCTGTATAAATTTGTTTGTTTTTCAATTTCTTATCTGTGGAAAATGTGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGC</canonical>
            <polymorphic>TCTTGTCAAAAATATCTTCTCGAATTTTGTGTCTTTTTTAACTTTCTGTATAAATTTGTTTGTTTTTCAATTTCTTATCTGTGGAAAATGTGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCSAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>445 351 127 56 21</canonical_bands>
                <polymorphic_bands>445 351 183 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCGGTTATAAATACCATCTCTT</pcr_primer_p1>
		<pcr_primer_p2>ACGGATTCAAAGGTTAGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</canonical_amplicon>
		<polymorphic_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCSAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26255</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>957314</contig_pos>
        <strand>+</strand>
        <context>CTTTYSAAAT[C/T]AAYTTTWWAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAAT</left_flank>
        <right_flank>AATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAAATATCTTCTCGAATTTTGTGTCTTTTTTAACTTTCTGTATAAATTTGTTTGTTTTTCAATTTCTTATCTGTGGAAAATGTGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGT</canonical>
            <polymorphic>TCAAAAATATCTTCTCGAATTTTGTGTCTTTTTTAACTTTCTGTATAAATTTGTTTGTTTTTCAATTTCTTATCTGTGGAAAATGTGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATYAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCGGTTATAAATACCATCTCTT</pcr_primer_p1>
		<pcr_primer_p2>ACGGATTCAAAGGTTAGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</canonical_amplicon>
		<polymorphic_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATYAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26256</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>957317</contig_pos>
        <strand>+</strand>
        <context>TYSAAATYAA[C/T]TTTWWAAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAA</left_flank>
        <right_flank>TTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATATCTTCTCGAATTTTGTGTCTTTTTTAACTTTCTGTATAAATTTGTTTGTTTTTCAATTTCTTATCTGTGGAAAATGTGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGTAAT</canonical>
            <polymorphic>AAAATATCTTCTCGAATTTTGTGTCTTTTTTAACTTTCTGTATAAATTTGTTTGTTTTTCAATTTCTTATCTGTGGAAAATGTGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAAYTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>213 125 118 116 104 62 54 42 30 29 29 20 17 16 14 11</canonical_bands>
                <polymorphic_bands>213 133 125 118 116 62 54 42 30 29 20 17 16 14 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCGGTTATAAATACCATCTCTT</pcr_primer_p1>
		<pcr_primer_p2>ACGGATTCAAAGGTTAGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</canonical_amplicon>
		<polymorphic_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAAYTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26257</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>957321</contig_pos>
        <strand>+</strand>
        <context>AATYAAYTTT[A/T]WAAGTTCCYC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTT</left_flank>
        <right_flank>TAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCTTCTCGAATTTTGTGTCTTTTTTAACTTTCTGTATAAATTTGTTTGTTTTTCAATTTCTTATCTGTGGAAAATGTGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGTAATGGGG</canonical>
            <polymorphic>TATCTTCTCGAATTTTGTGTCTTTTTTAACTTTCTGTATAAATTTGTTTGTTTTTCAATTTCTTATCTGTGGAAAATGTGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTWTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGTAATGGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>482 474 26 18</canonical_bands>
                <polymorphic_bands>492 482 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCGGTTATAAATACCATCTCTT</pcr_primer_p1>
		<pcr_primer_p2>ACGGATTCAAAGGTTAGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</canonical_amplicon>
		<polymorphic_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTWTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26258</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>957322</contig_pos>
        <strand>+</strand>
        <context>ATYAAYTTTW[A/T]AAGTTCCYCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTT</left_flank>
        <right_flank>AAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTTCTCGAATTTTGTGTCTTTTTTAACTTTCTGTATAAATTTGTTTGTTTTTCAATTTCTTATCTGTGGAAAATGTGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGTAATGGGGT</canonical>
            <polymorphic>ATCTTCTCGAATTTTGTGTCTTTTTTAACTTTCTGTATAAATTTGTTTGTTTTTCAATTTCTTATCTGTGGAAAATGTGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTWAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGTAATGGGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>483 474 25 18</canonical_bands>
                <polymorphic_bands>492 483 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCGGTTATAAATACCATCTCTT</pcr_primer_p1>
		<pcr_primer_p2>ACGGATTCAAAGGTTAGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</canonical_amplicon>
		<polymorphic_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTWAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26259</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>957330</contig_pos>
        <strand>+</strand>
        <context>TWWAAGTTCC[C/T]CCTGTCATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCC</left_flank>
        <right_flank>CCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTTTGTGTCTTTTTTAACTTTCTGTATAAATTTGTTTGTTTTTCAATTTCTTATCTGTGGAAAATGTGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGTAATGGGGTTGGTACAA</canonical>
            <polymorphic>GAATTTTGTGTCTTTTTTAACTTTCTGTATAAATTTGTTTGTTTTTCAATTTCTTATCTGTGGAAAATGTGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCYCCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGTAATGGGGTTGGTACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>227 172 160 73 63 54 53 52 51 48 18 10 10 9</canonical_bands>
                <polymorphic_bands>278 172 160 73 63 54 53 52 48 18 10 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCGGTTATAAATACCATCTCTT</pcr_primer_p1>
		<pcr_primer_p2>ACGGATTCAAAGGTTAGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</canonical_amplicon>
		<polymorphic_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCYCCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26260</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>957342</contig_pos>
        <strand>+</strand>
        <context>CTGTCATTTA[C/T]ATCTTGCTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTA</left_flank>
        <right_flank>ATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTAACTTTCTGTATAAATTTGTTTGTTTTTCAATTTCTTATCTGTGGAAAATGTGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGTAATGGGGTTGGTACAAGAGAAATAAGAC</canonical>
            <polymorphic>TTTTTTAACTTTCTGTATAAATTTGTTTGTTTTTCAATTTCTTATCTGTGGAAAATGTGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAYATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGTAATGGGGTTGGTACAAGAGAAATAAGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>503 474 18 5</canonical_bands>
                <polymorphic_bands>521 474 5</polymorphic_bands>
            </assay>
            <assay>
                <site>ATTTAAAT</site>
                <isoschizomers>
                    <enzyme>SmiI</enzyme>
                    <enzyme>SwaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCGGTTATAAATACCATCTCTT</pcr_primer_p1>
		<pcr_primer_p2>ACGGATTCAAAGGTTAGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</canonical_amplicon>
		<polymorphic_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAYATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26261</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>957353</contig_pos>
        <strand>+</strand>
        <context>ATCTTGCTTT[C/T]TTTTACTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTT</left_flank>
        <right_flank>TTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGTATAAATTTGTTTGTTTTTCAATTTCTTATCTGTGGAAAATGTGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGTAATGGGGTTGGTACAAGAGAAATAAGACTTACACTTAGA</canonical>
            <polymorphic>TCTGTATAAATTTGTTTGTTTTTCAATTTCTTATCTGTGGAAAATGTGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTYTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGTAATGGGGTTGGTACAAGAGAAATAAGACTTACACTTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCGGTTATAAATACCATCTCTT</pcr_primer_p1>
		<pcr_primer_p2>ACGGATTCAAAGGTTAGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</canonical_amplicon>
		<polymorphic_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTYTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26262</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>957382</contig_pos>
        <strand>+</strand>
        <context>CATGTACAGC[A/G]TWMTCGTCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGC</left_flank>
        <right_flank>TTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTATCTGTGGAAAATGTGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGTAATGGGGTTGGTACAAGAGAAATAAGACTTACACTTAGACTTTTTGGTGGAAAAAAGTGAAACTTAGA</canonical>
            <polymorphic>CTTATCTGTGGAAAATGTGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCRTTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGTAATGGGGTTGGTACAAGAGAAATAAGACTTACACTTAGACTTTTTGGTGGAAAAAAGTGAAACTTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCGGTTATAAATACCATCTCTT</pcr_primer_p1>
		<pcr_primer_p2>ACGGATTCAAAGGTTAGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</canonical_amplicon>
		<polymorphic_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCRTTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26263</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>957384</contig_pos>
        <strand>+</strand>
        <context>TGTACAGCRT[A/T]MTCGTCAATG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCAT</left_flank>
        <right_flank>ATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCTGTGGAAAATGTGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGTAATGGGGTTGGTACAAGAGAAATAAGACTTACACTTAGACTTTTTGGTGGAAAAAAGTGAAACTTAGAGT</canonical>
            <polymorphic>TATCTGTGGAAAATGTGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATWATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGTAATGGGGTTGGTACAAGAGAAATAAGACTTACACTTAGACTTTTTGGTGGAAAAAAGTGAAACTTAGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCGGTTATAAATACCATCTCTT</pcr_primer_p1>
		<pcr_primer_p2>ACGGATTCAAAGGTTAGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</canonical_amplicon>
		<polymorphic_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATWATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26264</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>957385</contig_pos>
        <strand>+</strand>
        <context>GTACAGCRTW[A/C]TCGTCAATGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATT</left_flank>
        <right_flank>TCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTGTGGAAAATGTGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGTAATGGGGTTGGTACAAGAGAAATAAGACTTACACTTAGACTTTTTGGTGGAAAAAAGTGAAACTTAGAGTC</canonical>
            <polymorphic>ATCTGTGGAAAATGTGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTMTCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGTAATGGGGTTGGTACAAGAGAAATAAGACTTACACTTAGACTTTTTGGTGGAAAAAAGTGAAACTTAGAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCGGTTATAAATACCATCTCTT</pcr_primer_p1>
		<pcr_primer_p2>ACGGATTCAAAGGTTAGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</canonical_amplicon>
		<polymorphic_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTMTCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26265</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>957399</contig_pos>
        <strand>+</strand>
        <context>TCAATGCGCT[C/T]CGTTYTGRAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCT</left_flank>
        <right_flank>CGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGTAATGGGGTTGGTACAAGAGAAATAAGACTTACACTTAGACTTTTTGGTGGAAAAAAGTGAAACTTAGAGTCCCGAAAAAGGCAAC</canonical>
            <polymorphic>TGCGCATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTYCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGTAATGGGGTTGGTACAAGAGAAATAAGACTTACACTTAGACTTTTTGGTGGAAAAAAGTGAAACTTAGAGTCCCGAAAAAGGCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCGGTTATAAATACCATCTCTT</pcr_primer_p1>
		<pcr_primer_p2>ACGGATTCAAAGGTTAGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</canonical_amplicon>
		<polymorphic_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTYCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26266</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>957404</contig_pos>
        <strand>+</strand>
        <context>GCGCTYCGTT[C/T]TGRAAACGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTT</left_flank>
        <right_flank>TGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGTAATGGGGTTGGTACAAGAGAAATAAGACTTACACTTAGACTTTTTGGTGGAAAAAAGTGAAACTTAGAGTCCCGAAAAAGGCAACTAGAA</canonical>
            <polymorphic>ATCAGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTYTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGTAATGGGGTTGGTACAAGAGAAATAAGACTTACACTTAGACTTTTTGGTGGAAAAAAGTGAAACTTAGAGTCCCGAAAAAGGCAACTAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCGGTTATAAATACCATCTCTT</pcr_primer_p1>
		<pcr_primer_p2>ACGGATTCAAAGGTTAGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</canonical_amplicon>
		<polymorphic_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTYTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26267</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>957407</contig_pos>
        <strand>+</strand>
        <context>CTYCGTTYTG[A/G]AAACGAAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTG</left_flank>
        <right_flank>AAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGTAATGGGGTTGGTACAAGAGAAATAAGACTTACACTTAGACTTTTTGGTGGAAAAAAGTGAAACTTAGAGTCCCGAAAAAGGCAACTAGAAATT</canonical>
            <polymorphic>AGTGCAAAAAGCCGAAAAAAAGTTGACGATCAAATTTCTCTCCAAACAATAATAAAATGCGCAGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGRAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGTAATGGGGTTGGTACAAGAGAAATAAGACTTACACTTAGACTTTTTGGTGGAAAAAAGTGAAACTTAGAGTCCCGAAAAAGGCAACTAGAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCGGTTATAAATACCATCTCTT</pcr_primer_p1>
		<pcr_primer_p2>ACGGATTCAAAGGTTAGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</canonical_amplicon>
		<polymorphic_amplicon>AGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGRAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26268</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>957469</contig_pos>
        <strand>+</strand>
        <context>TGAATCCGTC[C/T]TACTTTCCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTC</left_flank>
        <right_flank>TACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGTAATGGGGTTGGTACAAGAGAAATAAGACTTACACTTAGACTTTTTGGTGGAAAAAAGTGAAACTTAGAGTCCCGAAAAAGGCAACTAGAAATTTTCGATTCATCTAAATGAAATTTGGCAAAAAAATGTCGATCCCAAAAATCAAGCTCTTTTTT</canonical>
            <polymorphic>AGAAAAAAAACATTTCTAAAAAGGGTCTCCAAAATAATATAGGCTGAAGAAACAGCGGGAATCATTGAAAAAAAAACTGATTCATAAATTTCTCTGTAAGTGTAATTTCTCTGTAAGTATATGTTTTCTAGGGTTATTTGTTACATTTTACAAAAAAGTTTGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTAAAAAACCTGTTGAGTCGACAGTGCCGACGTATTCATTTTGGTCAGTACTGTAAGCGGTTATAAATACCATCTCTTCTTCAAGCAGTTCTTATAGTGTACGAAAGCTTTCAGGTGATACAAAATTATCAACCTCATTTCCTTTCGAAATCAATTTTTTAAGTTCCACCTGTCATTTAAATCTTGCTTTTTTTTACTTCTCGAACATTCATGTACAGCATTATCGTCAATGCGCTCCGTTTTGGAAACGAAACAGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCYTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGTAATGGGGTTGGTACAAGAGAAATAAGACTTACACTTAGACTTTTTGGTGGAAAAAAGTGAAACTTAGAGTCCCGAAAAAGGCAACTAGAAATTTTCGATTCATCTAAATGAAATTTGGCAAAAAAATGTCGATCCCAAAAATCAAGCTCTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAATTCAAGTCCCAAACTCTAC</pcr_primer_p1>
		<pcr_primer_p2>ATCTGTAGTTTCTAAATCGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGAT</canonical_amplicon>
		<polymorphic_amplicon>AGAATTCAAGTCCCAAACTCTACCTCTAATATTTCTAACCTTTGAATCCGTCYTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26269</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>957939</contig_pos>
        <strand>+</strand>
        <context>TTGGCAAAAA[A/G]WTKTCGATCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAGGCAACTAGAAATTTTCGATTCATCTAAATGAAATTTGGCAAAAA</left_flank>
        <right_flank>ATGTCGATCCCAAAAATCAAGCTCTTTTTTGTCTGGAACACTCTGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGTAATGGGGTTGGTACAAGAGAAATAAGACTTACACTTAGACTTTTTGGTGGAAAAAAGTGAAACTTAGAGTCCCGAAAAAGGCAACTAGAAATTTTCGATTCATCTAAATGAAATTTGGCAAAAAAATGTCGATCCCAAAAATCAAGCTCTTTTTTGTCTGGAACACTCTGAAAAAGTCAAAATGTGATGTCATTTTTCTAGTATTGTAGACAAAACGTCATGAAGAATAATACATTTTAAGGAGTTTCCTGAAATGCTTGATTGCTTTCTGCTACATTTTTCTCATTTTTTACATTTATTTTCTAAGTAAGCGAAATGAGATAATTTCAAATTATGAAAATAATAACCTTCAGTAAAAACCGACACCGTTGTCTATCGCATAAGTGTTCCCAGTCAACTAGAACTGATAATTTTTCACACTACAAATACAGCTTTGTTAATTATCTCAATATGCAGTGGATGGTTTTATTACCATCTCTATAAAATTGTTAAAAATTTGGAAATAGGTAACGCGAACAAAGCAAAATTTTTATTATATCAATTTGGTCCAATTCACACGGTTTTATCGGTTATTTTTTGTTTTGAAAATATTCAAATTATGCCAATCTTTTTTTTCTGCCAATCA</canonical>
            <polymorphic>CTCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGTAATGGGGTTGGTACAAGAGAAATAAGACTTACACTTAGACTTTTTGGTGGAAAAAAGTGAAACTTAGAGTCCCGAAAAAGGCAACTAGAAATTTTCGATTCATCTAAATGAAATTTGGCAAAAARATGTCGATCCCAAAAATCAAGCTCTTTTTTGTCTGGAACACTCTGAAAAAGTCAAAATGTGATGTCATTTTTCTAGTATTGTAGACAAAACGTCATGAAGAATAATACATTTTAAGGAGTTTCCTGAAATGCTTGATTGCTTTCTGCTACATTTTTCTCATTTTTTACATTTATTTTCTAAGTAAGCGAAATGAGATAATTTCAAATTATGAAAATAATAACCTTCAGTAAAAACCGACACCGTTGTCTATCGCATAAGTGTTCCCAGTCAACTAGAACTGATAATTTTTCACACTACAAATACAGCTTTGTTAATTATCTCAATATGCAGTGGATGGTTTTATTACCATCTCTATAAAATTGTTAAAAATTTGGAAATAGGTAACGCGAACAAAGCAAAATTTTTATTATATCAATTTGGTCCAATTCACACGGTTTTATCGGTTATTTTTTGTTTTGAAAATATTCAAATTATGCCAATCTTTTTTTTCTGCCAATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTGGTACAAGAGAAATAAGACT</pcr_primer_p1>
		<pcr_primer_p2>TTCAGGAAACTCCTTAAAATGTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGTTGGTACAAGAGAAATAAGACTTACACTTAGACTTTTTGGTGGAAAAAAGTGAAACTTAGAGTCCCGAAAAAGGCAACTAGAAATTTTCGATTCATCTAAATGAAATTTGGCAAAAAAATGTCGATCCCAAAAATCAAGCTCTTTTTTGTCTGGAACACTCTGAAAAAGTCAAAATGTGATGTCATTTTTCTAGTATTGTAGACAAAACGTCATGAAGAATAATACATTTTAAGGAGTTTCCTGAA</canonical_amplicon>
		<polymorphic_amplicon>GGTTGGTACAAGAGAAATAAGACTTACACTTAGACTTTTTGGTGGAAAAAAGTGAAACTTAGAGTCCCGAAAAAGGCAACTAGAAATTTTCGATTCATCTAAATGAAATTTGGCAAAAARATGTCGATCCCAAAAATCAAGCTCTTTTTTGTCTGGAACACTCTGAAAAAGTCAAAATGTGATGTCATTTTTCTAGTATTGTAGACAAAACGTCATGAAGAATAATACATTTTAAGGAGTTTCCTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26270</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>957940</contig_pos>
        <strand>+</strand>
        <context>TGGCAAAAAR[A/T]TKTCGATCCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAGGCAACTAGAAATTTTCGATTCATCTAAATGAAATTTGGCAAAAAA</left_flank>
        <right_flank>TGTCGATCCCAAAAATCAAGCTCTTTTTTGTCTGGAACACTCTGAAAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGTAATGGGGTTGGTACAAGAGAAATAAGACTTACACTTAGACTTTTTGGTGGAAAAAAGTGAAACTTAGAGTCCCGAAAAAGGCAACTAGAAATTTTCGATTCATCTAAATGAAATTTGGCAAAAAAATGTCGATCCCAAAAATCAAGCTCTTTTTTGTCTGGAACACTCTGAAAAAGTCAAAATGTGATGTCATTTTTCTAGTATTGTAGACAAAACGTCATGAAGAATAATACATTTTAAGGAGTTTCCTGAAATGCTTGATTGCTTTCTGCTACATTTTTCTCATTTTTTACATTTATTTTCTAAGTAAGCGAAATGAGATAATTTCAAATTATGAAAATAATAACCTTCAGTAAAAACCGACACCGTTGTCTATCGCATAAGTGTTCCCAGTCAACTAGAACTGATAATTTTTCACACTACAAATACAGCTTTGTTAATTATCTCAATATGCAGTGGATGGTTTTATTACCATCTCTATAAAATTGTTAAAAATTTGGAAATAGGTAACGCGAACAAAGCAAAATTTTTATTATATCAATTTGGTCCAATTCACACGGTTTTATCGGTTATTTTTTGTTTTGAAAATATTCAAATTATGCCAATCTTTTTTTTCTGCCAATCAG</canonical>
            <polymorphic>TCTAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGTAATGGGGTTGGTACAAGAGAAATAAGACTTACACTTAGACTTTTTGGTGGAAAAAAGTGAAACTTAGAGTCCCGAAAAAGGCAACTAGAAATTTTCGATTCATCTAAATGAAATTTGGCAAAAAAWTGTCGATCCCAAAAATCAAGCTCTTTTTTGTCTGGAACACTCTGAAAAAGTCAAAATGTGATGTCATTTTTCTAGTATTGTAGACAAAACGTCATGAAGAATAATACATTTTAAGGAGTTTCCTGAAATGCTTGATTGCTTTCTGCTACATTTTTCTCATTTTTTACATTTATTTTCTAAGTAAGCGAAATGAGATAATTTCAAATTATGAAAATAATAACCTTCAGTAAAAACCGACACCGTTGTCTATCGCATAAGTGTTCCCAGTCAACTAGAACTGATAATTTTTCACACTACAAATACAGCTTTGTTAATTATCTCAATATGCAGTGGATGGTTTTATTACCATCTCTATAAAATTGTTAAAAATTTGGAAATAGGTAACGCGAACAAAGCAAAATTTTTATTATATCAATTTGGTCCAATTCACACGGTTTTATCGGTTATTTTTTGTTTTGAAAATATTCAAATTATGCCAATCTTTTTTTTCTGCCAATCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTGGTACAAGAGAAATAAGACT</pcr_primer_p1>
		<pcr_primer_p2>TTCAGGAAACTCCTTAAAATGTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGTTGGTACAAGAGAAATAAGACTTACACTTAGACTTTTTGGTGGAAAAAAGTGAAACTTAGAGTCCCGAAAAAGGCAACTAGAAATTTTCGATTCATCTAAATGAAATTTGGCAAAAAAATGTCGATCCCAAAAATCAAGCTCTTTTTTGTCTGGAACACTCTGAAAAAGTCAAAATGTGATGTCATTTTTCTAGTATTGTAGACAAAACGTCATGAAGAATAATACATTTTAAGGAGTTTCCTGAA</canonical_amplicon>
		<polymorphic_amplicon>GGTTGGTACAAGAGAAATAAGACTTACACTTAGACTTTTTGGTGGAAAAAAGTGAAACTTAGAGTCCCGAAAAAGGCAACTAGAAATTTTCGATTCATCTAAATGAAATTTGGCAAAAAAWTGTCGATCCCAAAAATCAAGCTCTTTTTTGTCTGGAACACTCTGAAAAAGTCAAAATGTGATGTCATTTTTCTAGTATTGTAGACAAAACGTCATGAAGAATAATACATTTTAAGGAGTTTCCTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26271</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>957942</contig_pos>
        <strand>+</strand>
        <context>GCAAAAARWT[G/T]TCGATCCCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGGCAACTAGAAATTTTCGATTCATCTAAATGAAATTTGGCAAAAAAAT</left_flank>
        <right_flank>TCGATCCCAAAAATCAAGCTCTTTTTTGTCTGGAACACTCTGAAAAAGTC</right_flank>
        <qual_score>130</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGTAATGGGGTTGGTACAAGAGAAATAAGACTTACACTTAGACTTTTTGGTGGAAAAAAGTGAAACTTAGAGTCCCGAAAAAGGCAACTAGAAATTTTCGATTCATCTAAATGAAATTTGGCAAAAAAATGTCGATCCCAAAAATCAAGCTCTTTTTTGTCTGGAACACTCTGAAAAAGTCAAAATGTGATGTCATTTTTCTAGTATTGTAGACAAAACGTCATGAAGAATAATACATTTTAAGGAGTTTCCTGAAATGCTTGATTGCTTTCTGCTACATTTTTCTCATTTTTTACATTTATTTTCTAAGTAAGCGAAATGAGATAATTTCAAATTATGAAAATAATAACCTTCAGTAAAAACCGACACCGTTGTCTATCGCATAAGTGTTCCCAGTCAACTAGAACTGATAATTTTTCACACTACAAATACAGCTTTGTTAATTATCTCAATATGCAGTGGATGGTTTTATTACCATCTCTATAAAATTGTTAAAAATTTGGAAATAGGTAACGCGAACAAAGCAAAATTTTTATTATATCAATTTGGTCCAATTCACACGGTTTTATCGGTTATTTTTTGTTTTGAAAATATTCAAATTATGCCAATCTTTTTTTTCTGCCAATCAGTC</canonical>
            <polymorphic>TAATATTTCTAACCTTTGAATCCGTCCTACTTTCCATTGCCGATGTTTTGTTCGTTTGCCTTATAATCTATAAAAAATGGAAAAAATCAGAAGACGCTACCAATTATCAATATCACAGTCCAATTTTCAATCAATTATTTTTTTGCTCAGCAGTTTGTTTGGTATACACGAACTTTCTTCTTTTTGGGGCATTTATTTCCGATTTAGAAACTACAGATGATTATTTACAATGGACTACCCTGGTATTCCTAATTATTGAAAGCTTGTCTATTTCCTTCATTGGCGTTTTTTTCGTCAGTATTTCAATTTTTTCGTTTTTGGCGGTATTCAAAGAATTGTGATTTTATATCTACCATCGTACAAATGCTTTGTAATGGGGTTGGTACAAGAGAAATAAGACTTACACTTAGACTTTTTGGTGGAAAAAAGTGAAACTTAGAGTCCCGAAAAAGGCAACTAGAAATTTTCGATTCATCTAAATGAAATTTGGCAAAAAAATKTCGATCCCAAAAATCAAGCTCTTTTTTGTCTGGAACACTCTGAAAAAGTCAAAATGTGATGTCATTTTTCTAGTATTGTAGACAAAACGTCATGAAGAATAATACATTTTAAGGAGTTTCCTGAAATGCTTGATTGCTTTCTGCTACATTTTTCTCATTTTTTACATTTATTTTCTAAGTAAGCGAAATGAGATAATTTCAAATTATGAAAATAATAACCTTCAGTAAAAACCGACACCGTTGTCTATCGCATAAGTGTTCCCAGTCAACTAGAACTGATAATTTTTCACACTACAAATACAGCTTTGTTAATTATCTCAATATGCAGTGGATGGTTTTATTACCATCTCTATAAAATTGTTAAAAATTTGGAAATAGGTAACGCGAACAAAGCAAAATTTTTATTATATCAATTTGGTCCAATTCACACGGTTTTATCGGTTATTTTTTGTTTTGAAAATATTCAAATTATGCCAATCTTTTTTTTCTGCCAATCAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTGGTACAAGAGAAATAAGACT</pcr_primer_p1>
		<pcr_primer_p2>TTCAGGAAACTCCTTAAAATGTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGTTGGTACAAGAGAAATAAGACTTACACTTAGACTTTTTGGTGGAAAAAAGTGAAACTTAGAGTCCCGAAAAAGGCAACTAGAAATTTTCGATTCATCTAAATGAAATTTGGCAAAAAAATGTCGATCCCAAAAATCAAGCTCTTTTTTGTCTGGAACACTCTGAAAAAGTCAAAATGTGATGTCATTTTTCTAGTATTGTAGACAAAACGTCATGAAGAATAATACATTTTAAGGAGTTTCCTGAA</canonical_amplicon>
		<polymorphic_amplicon>GGTTGGTACAAGAGAAATAAGACTTACACTTAGACTTTTTGGTGGAAAAAAGTGAAACTTAGAGTCCCGAAAAAGGCAACTAGAAATTTTCGATTCATCTAAATGAAATTTGGCAAAAAAATKTCGATCCCAAAAATCAAGCTCTTTTTTGTCTGGAACACTCTGAAAAAGTCAAAATGTGATGTCATTTTTCTAGTATTGTAGACAAAACGTCATGAAGAATAATACATTTTAAGGAGTTTCCTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26272</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1055396</contig_pos>
        <strand></strand>
        <context>tagaagggcc[C/T]tccgagaggg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGGAATACCGTAAAACCCGTATTAGAAGGGCCCCTCTAATAGAAGGGCC</left_flank>
        <right_flank>TCCGAGAGGGGCTTGGAAAAATAGAAGCCCCCCCCCCAAAAAAATAGAAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAGGAGTGTCATTCAAAATGGAAAAGACATGGAGTCTGTATACTGGGTGTAGAGTATCTGAACGAGCTATTTAAAAGTCAGATGGTAACAGGTAAACTCTAGTTTCTTTCTTAAATCATTCTATTTTTTGTTTTCAGCAAACAAGATGTTGACAACTTTTGATTTCGGAACAATTGCTTGTATGCGGGAGATGATAAAAATGAATGTTACTGGTGAAACACTCGATACCGTCTGGTTGACTTCATTTCCTCAGGTACAGTATGGAAGATATATGTATTCTGAAAAGATAAATTTCAGTTCCGAGAAATGCAAATGAAGACAAATGGAACGTACGATAGAAACACATTTGACTGTTAGATGAGATCCTGGTTAGATGAGATTGGGGGTCATGCGGTTTTCCGATAATAGTTAGTTTTTTTTGTGTGGTGATAATATATTCTTTTTGAAAAAGGAATACCGTAAAACCCGTATTAGAAGGGCCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGAAAAATAGAAGCCCCCCCCCCAAAAAAATAGAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAA</canonical>
            <polymorphic>TAAGGAGTGTCATTCAAAATGGAAAAGACATGGAGTCTGTATACTGGGTGTAGAGTATCTGAACGAGCTATTTAAAAGTCAGATGGTAACAGGTAAACTCTAGTTTCTTTCTTAAATCATTCTATTTTTTGTTTTCAGCAAACAAGATGTTGACAACTTTTGATTTCGGAACAATTGCTTGTATGCGGGAGATGATAAAAATGAATGTTACTGGTGAAACACTCGATACCGTCTGGTTGACTTCATTTCCTCAGGTACAGTATGGAAGATATATGTATTCTGAAAAGATAAATTTCAGTTCCGAGAAATGCAAATGAAGACAAATGGAACGTACGATAGAAACACATTTGACTGTTAGATGAGATCCTGGTTAGATGAGATTGGGGGTCATGCGGTTTTCCGATAATAGTTAGTTTTTTTTGTGTGGTGATAATATATTCTTTTTGAAAAAGGAATACCGTAAAACCCGTATTAGAAGGGCCCCTCTAATAGAAGGGCCYTCCGAGAGGGGCTTGGAAAAATAGAAGCCCCCCCCCCAAAAAAATAGAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGGCCC</site>
                <isoschizomers>
                    <enzyme>ApaI</enzyme>
                    <enzyme>Bsp120I</enzyme>
                    <enzyme>PspOMI</enzyme>
                </isoschizomers>
                <canonical_bands>482 315 169 17 17</canonical_bands>
                <polymorphic_bands>482 332 169 17</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>482 315 169 17 17</canonical_bands>
                <polymorphic_bands>482 332 169 17</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>482 260 169 55 17 17</canonical_bands>
                <polymorphic_bands>482 260 169 72 17</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>482 260 169 55 17 17</canonical_bands>
                <polymorphic_bands>482 260 169 72 17</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>505 331 164</canonical_bands>
                <polymorphic_bands>836 164</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>480 243 159 72 17 17 12</canonical_bands>
                <polymorphic_bands>480 243 159 89 17 12</polymorphic_bands>
            </assay>
            <assay>
                <site>CCTNNNNNAGG</site>
                <isoschizomers>
                    <enzyme>BstENI</enzyme>
                    <enzyme>EcoNI</enzyme>
                    <enzyme>XagI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>478 226 173 72 17 17 17</canonical_bands>
                <polymorphic_bands>478 226 173 89 17 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGAAGACAAATGGAACGTA</pcr_primer_p1>
		<pcr_primer_p2>TCATAGAGTGCCCTTCTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATGAAGACAAATGGAACGTACGATAGAAACACATTTGACTGTTAGATGAGATCCTGGTTAGATGAGATTGGGGGTCATGCGGTTTTCCGATAATAGTTAGTTTTTTTTGTGTGGTGATAATATATTCTTTTTGAAAAAGGAATACCGTAAAACCCGTATTAGAAGGGCCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGAAAAATAGAAGCCCCCCCCCCAAAAAAATAGAAGGGCACTCTATGA</canonical_amplicon>
		<polymorphic_amplicon>AATGAAGACAAATGGAACGTACGATAGAAACACATTTGACTGTTAGATGAGATCCTGGTTAGATGAGATTGGGGGTCATGCGGTTTTCCGATAATAGTTAGTTTTTTTTGTGTGGTGATAATATATTCTTTTTGAAAAAGGAATACCGTAAAACCCGTATTAGAAGGGCCCCTCTAATAGAAGGGCCYTCCGAGAGGGGCTTGGAAAAATAGAAGCCCCCCCCCCAAAAAAATAGAAGGGCACTCTATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26273</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1055413</contig_pos>
        <strand></strand>
        <context>aggggcttgg[A/C]aaaatagaag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCGTATTAGAAGGGCCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGG</left_flank>
        <right_flank>AAAATAGAAGCCCCCCCCCCAAAAAAATAGAAGGGCACTCTATGAAAAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGGAAAAGACATGGAGTCTGTATACTGGGTGTAGAGTATCTGAACGAGCTATTTAAAAGTCAGATGGTAACAGGTAAACTCTAGTTTCTTTCTTAAATCATTCTATTTTTTGTTTTCAGCAAACAAGATGTTGACAACTTTTGATTTCGGAACAATTGCTTGTATGCGGGAGATGATAAAAATGAATGTTACTGGTGAAACACTCGATACCGTCTGGTTGACTTCATTTCCTCAGGTACAGTATGGAAGATATATGTATTCTGAAAAGATAAATTTCAGTTCCGAGAAATGCAAATGAAGACAAATGGAACGTACGATAGAAACACATTTGACTGTTAGATGAGATCCTGGTTAGATGAGATTGGGGGTCATGCGGTTTTCCGATAATAGTTAGTTTTTTTTGTGTGGTGATAATATATTCTTTTTGAAAAAGGAATACCGTAAAACCCGTATTAGAAGGGCCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGAAAAATAGAAGCCCCCCCCCCAAAAAAATAGAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTCA</canonical>
            <polymorphic>AATGGAAAAGACATGGAGTCTGTATACTGGGTGTAGAGTATCTGAACGAGCTATTTAAAAGTCAGATGGTAACAGGTAAACTCTAGTTTCTTTCTTAAATCATTCTATTTTTTGTTTTCAGCAAACAAGATGTTGACAACTTTTGATTTCGGAACAATTGCTTGTATGCGGGAGATGATAAAAATGAATGTTACTGGTGAAACACTCGATACCGTCTGGTTGACTTCATTTCCTCAGGTACAGTATGGAAGATATATGTATTCTGAAAAGATAAATTTCAGTTCCGAGAAATGCAAATGAAGACAAATGGAACGTACGATAGAAACACATTTGACTGTTAGATGAGATCCTGGTTAGATGAGATTGGGGGTCATGCGGTTTTCCGATAATAGTTAGTTTTTTTTGTGTGGTGATAATATATTCTTTTTGAAAAAGGAATACCGTAAAACCCGTATTAGAAGGGCCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGMAAAATAGAAGCCCCCCCCCCAAAAAAATAGAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACGTACGATAGAAACACATTT</pcr_primer_p1>
		<pcr_primer_p2>GGGGTCCTTTTTCATAGAGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAACGTACGATAGAAACACATTTGACTGTTAGATGAGATCCTGGTTAGATGAGATTGGGGGTCATGCGGTTTTCCGATAATAGTTAGTTTTTTTTGTGTGGTGATAATATATTCTTTTTGAAAAAGGAATACCGTAAAACCCGTATTAGAAGGGCCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGAAAAATAGAAGCCCCCCCCCCAAAAAAATAGAAGGGCACTCTATGAAAAAGGACCCC</canonical_amplicon>
		<polymorphic_amplicon>GAACGTACGATAGAAACACATTTGACTGTTAGATGAGATCCTGGTTAGATGAGATTGGGGGTCATGCGGTTTTCCGATAATAGTTAGTTTTTTTTGTGTGGTGATAATATATTCTTTTTGAAAAAGGAATACCGTAAAACCCGTATTAGAAGGGCCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGMAAAATAGAAGCCCCCCCCCCAAAAAAATAGAAGGGCACTCTATGAAAAAGGACCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26274</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1055491</contig_pos>
        <strand></strand>
        <context>AAATGTGTTT[T/C]gaaattagaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAGAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTT</left_flank>
        <right_flank>GAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTCTAGTTTCTTTCTTAAATCATTCTATTTTTTGTTTTCAGCAAACAAGATGTTGACAACTTTTGATTTCGGAACAATTGCTTGTATGCGGGAGATGATAAAAATGAATGTTACTGGTGAAACACTCGATACCGTCTGGTTGACTTCATTTCCTCAGGTACAGTATGGAAGATATATGTATTCTGAAAAGATAAATTTCAGTTCCGAGAAATGCAAATGAAGACAAATGGAACGTACGATAGAAACACATTTGACTGTTAGATGAGATCCTGGTTAGATGAGATTGGGGGTCATGCGGTTTTCCGATAATAGTTAGTTTTTTTTGTGTGGTGATAATATATTCTTTTTGAAAAAGGAATACCGTAAAACCCGTATTAGAAGGGCCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGAAAAATAGAAGCCCCCCCCCCAAAAAAATAGAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTCATCAAATAATTGATCTTAAAATAATTCATGTTAATCATTTTGAATCAATCAGTGTACTTCAGTCAGTTTTTTTTTGACA</canonical>
            <polymorphic>AACTCTAGTTTCTTTCTTAAATCATTCTATTTTTTGTTTTCAGCAAACAAGATGTTGACAACTTTTGATTTCGGAACAATTGCTTGTATGCGGGAGATGATAAAAATGAATGTTACTGGTGAAACACTCGATACCGTCTGGTTGACTTCATTTCCTCAGGTACAGTATGGAAGATATATGTATTCTGAAAAGATAAATTTCAGTTCCGAGAAATGCAAATGAAGACAAATGGAACGTACGATAGAAACACATTTGACTGTTAGATGAGATCCTGGTTAGATGAGATTGGGGGTCATGCGGTTTTCCGATAATAGTTAGTTTTTTTTGTGTGGTGATAATATATTCTTTTTGAAAAAGGAATACCGTAAAACCCGTATTAGAAGGGCCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGAAAAATAGAAGCCCCCCCCCCAAAAAAATAGAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTYGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTCATCAAATAATTGATCTTAAAATAATTCATGTTAATCATTTTGAATCAATCAGTGTACTTCAGTCAGTTTTTTTTTGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGAAGGGCACTCTATGAAAA</pcr_primer_p1>
		<pcr_primer_p2>GACTAGAAACTTCGAATTGAATATG</pcr_primer_p2>
		<pcr_amplicon_size>473</pcr_amplicon_size>
		<canonical_amplicon>ATAGAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTC</canonical_amplicon>
		<polymorphic_amplicon>ATAGAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTYGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26275</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1055536</contig_pos>
        <strand></strand>
        <context>aatattccgg[G/A]aacttcacaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGG</left_flank>
        <right_flank>AACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAAGATGTTGACAACTTTTGATTTCGGAACAATTGCTTGTATGCGGGAGATGATAAAAATGAATGTTACTGGTGAAACACTCGATACCGTCTGGTTGACTTCATTTCCTCAGGTACAGTATGGAAGATATATGTATTCTGAAAAGATAAATTTCAGTTCCGAGAAATGCAAATGAAGACAAATGGAACGTACGATAGAAACACATTTGACTGTTAGATGAGATCCTGGTTAGATGAGATTGGGGGTCATGCGGTTTTCCGATAATAGTTAGTTTTTTTTGTGTGGTGATAATATATTCTTTTTGAAAAAGGAATACCGTAAAACCCGTATTAGAAGGGCCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGAAAAATAGAAGCCCCCCCCCCAAAAAAATAGAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTCATCAAATAATTGATCTTAAAATAATTCATGTTAATCATTTTGAATCAATCAGTGTACTTCAGTCAGTTTTTTTTTGACAGGTCATATAATCTTAATTTACAACCCGAAAGGTCTGCACGTCTGG</canonical>
            <polymorphic>AACAAGATGTTGACAACTTTTGATTTCGGAACAATTGCTTGTATGCGGGAGATGATAAAAATGAATGTTACTGGTGAAACACTCGATACCGTCTGGTTGACTTCATTTCCTCAGGTACAGTATGGAAGATATATGTATTCTGAAAAGATAAATTTCAGTTCCGAGAAATGCAAATGAAGACAAATGGAACGTACGATAGAAACACATTTGACTGTTAGATGAGATCCTGGTTAGATGAGATTGGGGGTCATGCGGTTTTCCGATAATAGTTAGTTTTTTTTGTGTGGTGATAATATATTCTTTTTGAAAAAGGAATACCGTAAAACCCGTATTAGAAGGGCCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGAAAAATAGAAGCCCCCCCCCCAAAAAAATAGAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGRAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTCATCAAATAATTGATCTTAAAATAATTCATGTTAATCATTTTGAATCAATCAGTGTACTTCAGTCAGTTTTTTTTTGACAGGTCATATAATCTTAATTTACAACCCGAAAGGTCTGCACGTCTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>273 270 230 227</canonical_bands>
                <polymorphic_bands>543 230 227</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGGGCACTCTATGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>GACTAGAAACTTCGAATTGAATATG</pcr_primer_p2>
		<pcr_amplicon_size>470</pcr_amplicon_size>
		<canonical_amplicon>GAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTC</canonical_amplicon>
		<polymorphic_amplicon>GAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGRAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26276</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1055601</contig_pos>
        <strand></strand>
        <context>gctaaatttt[G/A]gtgaaattgg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTT</left_flank>
        <right_flank>GTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTACTGGTGAAACACTCGATACCGTCTGGTTGACTTCATTTCCTCAGGTACAGTATGGAAGATATATGTATTCTGAAAAGATAAATTTCAGTTCCGAGAAATGCAAATGAAGACAAATGGAACGTACGATAGAAACACATTTGACTGTTAGATGAGATCCTGGTTAGATGAGATTGGGGGTCATGCGGTTTTCCGATAATAGTTAGTTTTTTTTGTGTGGTGATAATATATTCTTTTTGAAAAAGGAATACCGTAAAACCCGTATTAGAAGGGCCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGAAAAATAGAAGCCCCCCCCCCAAAAAAATAGAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTCATCAAATAATTGATCTTAAAATAATTCATGTTAATCATTTTGAATCAATCAGTGTACTTCAGTCAGTTTTTTTTTGACAGGTCATATAATCTTAATTTACAACCCGAAAGGTCTGCACGTCTGGCGATGTGTCGGCACATACAAAAACTCGAAAGAATAAACACATTGACTCCAAAGCGGCAAGCCTGT</canonical>
            <polymorphic>TGTTACTGGTGAAACACTCGATACCGTCTGGTTGACTTCATTTCCTCAGGTACAGTATGGAAGATATATGTATTCTGAAAAGATAAATTTCAGTTCCGAGAAATGCAAATGAAGACAAATGGAACGTACGATAGAAACACATTTGACTGTTAGATGAGATCCTGGTTAGATGAGATTGGGGGTCATGCGGTTTTCCGATAATAGTTAGTTTTTTTTGTGTGGTGATAATATATTCTTTTTGAAAAAGGAATACCGTAAAACCCGTATTAGAAGGGCCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGAAAAATAGAAGCCCCCCCCCCAAAAAAATAGAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTRGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTCATCAAATAATTGATCTTAAAATAATTCATGTTAATCATTTTGAATCAATCAGTGTACTTCAGTCAGTTTTTTTTTGACAGGTCATATAATCTTAATTTACAACCCGAAAGGTCTGCACGTCTGGCGATGTGTCGGCACATACAAAAACTCGAAAGAATAAACACATTGACTCCAAAGCGGCAAGCCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGGGCACTCTATGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>GACTAGAAACTTCGAATTGAATATG</pcr_primer_p2>
		<pcr_amplicon_size>470</pcr_amplicon_size>
		<canonical_amplicon>GAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTC</canonical_amplicon>
		<polymorphic_amplicon>GAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTRGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26277</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1055638</contig_pos>
        <strand></strand>
        <context>ttggacaaaa[T/C]tttktcgaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAA</left_flank>
        <right_flank>TTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATTTCCTCAGGTACAGTATGGAAGATATATGTATTCTGAAAAGATAAATTTCAGTTCCGAGAAATGCAAATGAAGACAAATGGAACGTACGATAGAAACACATTTGACTGTTAGATGAGATCCTGGTTAGATGAGATTGGGGGTCATGCGGTTTTCCGATAATAGTTAGTTTTTTTTGTGTGGTGATAATATATTCTTTTTGAAAAAGGAATACCGTAAAACCCGTATTAGAAGGGCCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGAAAAATAGAAGCCCCCCCCCCAAAAAAATAGAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTCATCAAATAATTGATCTTAAAATAATTCATGTTAATCATTTTGAATCAATCAGTGTACTTCAGTCAGTTTTTTTTTGACAGGTCATATAATCTTAATTTACAACCCGAAAGGTCTGCACGTCTGGCGATGTGTCGGCACATACAAAAACTCGAAAGAATAAACACATTGACTCCAAAGCGGCAAGCCTGTTGTAAATCATGTAGGATGACGCCCTGCTTCCACACGT</canonical>
            <polymorphic>TCATTTCCTCAGGTACAGTATGGAAGATATATGTATTCTGAAAAGATAAATTTCAGTTCCGAGAAATGCAAATGAAGACAAATGGAACGTACGATAGAAACACATTTGACTGTTAGATGAGATCCTGGTTAGATGAGATTGGGGGTCATGCGGTTTTCCGATAATAGTTAGTTTTTTTTGTGTGGTGATAATATATTCTTTTTGAAAAAGGAATACCGTAAAACCCGTATTAGAAGGGCCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGAAAAATAGAAGCCCCCCCCCCAAAAAAATAGAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAAYTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTCATCAAATAATTGATCTTAAAATAATTCATGTTAATCATTTTGAATCAATCAGTGTACTTCAGTCAGTTTTTTTTTGACAGGTCATATAATCTTAATTTACAACCCGAAAGGTCTGCACGTCTGGCGATGTGTCGGCACATACAAAAACTCGAAAGAATAAACACATTGACTCCAAAGCGGCAAGCCTGTTGTAAATCATGTAGGATGACGCCCTGCTTCCACACGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>493 315 54 48 39 29 12 10</canonical_bands>
                <polymorphic_bands>493 315 54 48 39 29 22</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>307 221 133 71 48 43 39 25 18 17 15 12 11 11 11 10 8</canonical_bands>
                <polymorphic_bands>307 221 133 71 48 43 39 25 22 18 17 15 11 11 11 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGGGCACTCTATGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>GACTAGAAACTTCGAATTGAATATG</pcr_primer_p2>
		<pcr_amplicon_size>470</pcr_amplicon_size>
		<canonical_amplicon>GAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTC</canonical_amplicon>
		<polymorphic_amplicon>GAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAAYTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26278</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1055642</contig_pos>
        <strand></strand>
        <context>acaaaayttt[T/G]tcgaattttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTT</left_flank>
        <right_flank>TCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCTCAGGTACAGTATGGAAGATATATGTATTCTGAAAAGATAAATTTCAGTTCCGAGAAATGCAAATGAAGACAAATGGAACGTACGATAGAAACACATTTGACTGTTAGATGAGATCCTGGTTAGATGAGATTGGGGGTCATGCGGTTTTCCGATAATAGTTAGTTTTTTTTGTGTGGTGATAATATATTCTTTTTGAAAAAGGAATACCGTAAAACCCGTATTAGAAGGGCCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGAAAAATAGAAGCCCCCCCCCCAAAAAAATAGAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTCATCAAATAATTGATCTTAAAATAATTCATGTTAATCATTTTGAATCAATCAGTGTACTTCAGTCAGTTTTTTTTTGACAGGTCATATAATCTTAATTTACAACCCGAAAGGTCTGCACGTCTGGCGATGTGTCGGCACATACAAAAACTCGAAAGAATAAACACATTGACTCCAAAGCGGCAAGCCTGTTGTAAATCATGTAGGATGACGCCCTGCTTCCACACGTCCAC</canonical>
            <polymorphic>TTCCTCAGGTACAGTATGGAAGATATATGTATTCTGAAAAGATAAATTTCAGTTCCGAGAAATGCAAATGAAGACAAATGGAACGTACGATAGAAACACATTTGACTGTTAGATGAGATCCTGGTTAGATGAGATTGGGGGTCATGCGGTTTTCCGATAATAGTTAGTTTTTTTTGTGTGGTGATAATATATTCTTTTTGAAAAAGGAATACCGTAAAACCCGTATTAGAAGGGCCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGAAAAATAGAAGCCCCCCCCCCAAAAAAATAGAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTKTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTCATCAAATAATTGATCTTAAAATAATTCATGTTAATCATTTTGAATCAATCAGTGTACTTCAGTCAGTTTTTTTTTGACAGGTCATATAATCTTAATTTACAACCCGAAAGGTCTGCACGTCTGGCGATGTGTCGGCACATACAAAAACTCGAAAGAATAAACACATTGACTCCAAAGCGGCAAGCCTGTTGTAAATCATGTAGGATGACGCCCTGCTTCCACACGTCCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 244 237 18</canonical_bands>
                <polymorphic_bands>519 244 237</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGGGCACTCTATGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>GACTAGAAACTTCGAATTGAATATG</pcr_primer_p2>
		<pcr_amplicon_size>470</pcr_amplicon_size>
		<canonical_amplicon>GAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTC</canonical_amplicon>
		<polymorphic_amplicon>GAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTKTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26279</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1055664</contig_pos>
        <strand></strand>
        <context>gataatttcg[A/G]aaaaaactgg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCG</left_flank>
        <right_flank>AAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATATGTATTCTGAAAAGATAAATTTCAGTTCCGAGAAATGCAAATGAAGACAAATGGAACGTACGATAGAAACACATTTGACTGTTAGATGAGATCCTGGTTAGATGAGATTGGGGGTCATGCGGTTTTCCGATAATAGTTAGTTTTTTTTGTGTGGTGATAATATATTCTTTTTGAAAAAGGAATACCGTAAAACCCGTATTAGAAGGGCCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGAAAAATAGAAGCCCCCCCCCCAAAAAAATAGAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTCATCAAATAATTGATCTTAAAATAATTCATGTTAATCATTTTGAATCAATCAGTGTACTTCAGTCAGTTTTTTTTTGACAGGTCATATAATCTTAATTTACAACCCGAAAGGTCTGCACGTCTGGCGATGTGTCGGCACATACAAAAACTCGAAAGAATAAACACATTGACTCCAAAGCGGCAAGCCTGTTGTAAATCATGTAGGATGACGCCCTGCTTCCACACGTCCACCTAATTGGCATATCAGGTTACT</canonical>
            <polymorphic>ATATATGTATTCTGAAAAGATAAATTTCAGTTCCGAGAAATGCAAATGAAGACAAATGGAACGTACGATAGAAACACATTTGACTGTTAGATGAGATCCTGGTTAGATGAGATTGGGGGTCATGCGGTTTTCCGATAATAGTTAGTTTTTTTTGTGTGGTGATAATATATTCTTTTTGAAAAAGGAATACCGTAAAACCCGTATTAGAAGGGCCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGAAAAATAGAAGCCCCCCCCCCAAAAAAATAGAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGRAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTCATCAAATAATTGATCTTAAAATAATTCATGTTAATCATTTTGAATCAATCAGTGTACTTCAGTCAGTTTTTTTTTGACAGGTCATATAATCTTAATTTACAACCCGAAAGGTCTGCACGTCTGGCGATGTGTCGGCACATACAAAAACTCGAAAGAATAAACACATTGACTCCAAAGCGGCAAGCCTGTTGTAAATCATGTAGGATGACGCCCTGCTTCCACACGTCCACCTAATTGGCATATCAGGTTACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>479 266 237 18</canonical_bands>
                <polymorphic_bands>479 266 255</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>414 237 163 102 66 9 9</canonical_bands>
                <polymorphic_bands>414 246 163 102 66 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGGGCACTCTATGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>GACTAGAAACTTCGAATTGAATATG</pcr_primer_p2>
		<pcr_amplicon_size>470</pcr_amplicon_size>
		<canonical_amplicon>GAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTC</canonical_amplicon>
		<polymorphic_amplicon>GAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGRAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26280</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1055694</contig_pos>
        <strand></strand>
        <context>cagaagggcc[T/C]ytctgattga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCC</left_flank>
        <right_flank>TTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCGAGAAATGCAAATGAAGACAAATGGAACGTACGATAGAAACACATTTGACTGTTAGATGAGATCCTGGTTAGATGAGATTGGGGGTCATGCGGTTTTCCGATAATAGTTAGTTTTTTTTGTGTGGTGATAATATATTCTTTTTGAAAAAGGAATACCGTAAAACCCGTATTAGAAGGGCCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGAAAAATAGAAGCCCCCCCCCCAAAAAAATAGAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTCATCAAATAATTGATCTTAAAATAATTCATGTTAATCATTTTGAATCAATCAGTGTACTTCAGTCAGTTTTTTTTTGACAGGTCATATAATCTTAATTTACAACCCGAAAGGTCTGCACGTCTGGCGATGTGTCGGCACATACAAAAACTCGAAAGAATAAACACATTGACTCCAAAGCGGCAAGCCTGTTGTAAATCATGTAGGATGACGCCCTGCTTCCACACGTCCACCTAATTGGCATATCAGGTTACTTTTATGCCCCGCCCACCTTTGGTGGCTCAT</canonical>
            <polymorphic>TTCCGAGAAATGCAAATGAAGACAAATGGAACGTACGATAGAAACACATTTGACTGTTAGATGAGATCCTGGTTAGATGAGATTGGGGGTCATGCGGTTTTCCGATAATAGTTAGTTTTTTTTGTGTGGTGATAATATATTCTTTTTGAAAAAGGAATACCGTAAAACCCGTATTAGAAGGGCCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGAAAAATAGAAGCCCCCCCCCCAAAAAAATAGAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCYTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTCATCAAATAATTGATCTTAAAATAATTCATGTTAATCATTTTGAATCAATCAGTGTACTTCAGTCAGTTTTTTTTTGACAGGTCATATAATCTTAATTTACAACCCGAAAGGTCTGCACGTCTGGCGATGTGTCGGCACATACAAAAACTCGAAAGAATAAACACATTGACTCCAAAGCGGCAAGCCTGTTGTAAATCATGTAGGATGACGCCCTGCTTCCACACGTCCACCTAATTGGCATATCAGGTTACTTTTATGCCCCGCCCACCTTTGGTGGCTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>471 226 180 72 17 17 17</canonical_bands>
                <polymorphic_bands>471 243 180 72 17 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGGGCACTCTATGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>GACTAGAAACTTCGAATTGAATATG</pcr_primer_p2>
		<pcr_amplicon_size>470</pcr_amplicon_size>
		<canonical_amplicon>GAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTC</canonical_amplicon>
		<polymorphic_amplicon>GAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCYTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26281</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1055695</contig_pos>
        <strand></strand>
        <context>agaagggccy[T/C]tctgattgaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCT</left_flank>
        <right_flank>TCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCGAGAAATGCAAATGAAGACAAATGGAACGTACGATAGAAACACATTTGACTGTTAGATGAGATCCTGGTTAGATGAGATTGGGGGTCATGCGGTTTTCCGATAATAGTTAGTTTTTTTTGTGTGGTGATAATATATTCTTTTTGAAAAAGGAATACCGTAAAACCCGTATTAGAAGGGCCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGAAAAATAGAAGCCCCCCCCCCAAAAAAATAGAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTCATCAAATAATTGATCTTAAAATAATTCATGTTAATCATTTTGAATCAATCAGTGTACTTCAGTCAGTTTTTTTTTGACAGGTCATATAATCTTAATTTACAACCCGAAAGGTCTGCACGTCTGGCGATGTGTCGGCACATACAAAAACTCGAAAGAATAAACACATTGACTCCAAAGCGGCAAGCCTGTTGTAAATCATGTAGGATGACGCCCTGCTTCCACACGTCCACCTAATTGGCATATCAGGTTACTTTTATGCCCCGCCCACCTTTGGTGGCTCATT</canonical>
            <polymorphic>TCCGAGAAATGCAAATGAAGACAAATGGAACGTACGATAGAAACACATTTGACTGTTAGATGAGATCCTGGTTAGATGAGATTGGGGGTCATGCGGTTTTCCGATAATAGTTAGTTTTTTTTGTGTGGTGATAATATATTCTTTTTGAAAAAGGAATACCGTAAAACCCGTATTAGAAGGGCCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGAAAAATAGAAGCCCCCCCCCCAAAAAAATAGAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTYTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTCATCAAATAATTGATCTTAAAATAATTCATGTTAATCATTTTGAATCAATCAGTGTACTTCAGTCAGTTTTTTTTTGACAGGTCATATAATCTTAATTTACAACCCGAAAGGTCTGCACGTCTGGCGATGTGTCGGCACATACAAAAACTCGAAAGAATAAACACATTGACTCCAAAGCGGCAAGCCTGTTGTAAATCATGTAGGATGACGCCCTGCTTCCACACGTCCACCTAATTGGCATATCAGGTTACTTTTATGCCCCGCCCACCTTTGGTGGCTCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGGGCACTCTATGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>GACTAGAAACTTCGAATTGAATATG</pcr_primer_p2>
		<pcr_amplicon_size>470</pcr_amplicon_size>
		<canonical_amplicon>GAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTC</canonical_amplicon>
		<polymorphic_amplicon>GAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTYTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26282</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1055835</contig_pos>
        <strand></strand>
        <context>atggccaaaa[A/T]caccattttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAA</left_flank>
        <right_flank>CACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTTGAAAAAGGAATACCGTAAAACCCGTATTAGAAGGGCCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGAAAAATAGAAGCCCCCCCCCCAAAAAAATAGAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTCATCAAATAATTGATCTTAAAATAATTCATGTTAATCATTTTGAATCAATCAGTGTACTTCAGTCAGTTTTTTTTTGACAGGTCATATAATCTTAATTTACAACCCGAAAGGTCTGCACGTCTGGCGATGTGTCGGCACATACAAAAACTCGAAAGAATAAACACATTGACTCCAAAGCGGCAAGCCTGTTGTAAATCATGTAGGATGACGCCCTGCTTCCACACGTCCACCTAATTGGCATATCAGGTTACTTTTATGCCCCGCCCACCTTTGGTGGCTCATTATCTGCACAATAATCTCCAGTTGCTTTTCGACTTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>CTTTTTGAAAAAGGAATACCGTAAAACCCGTATTAGAAGGGCCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGAAAAATAGAAGCCCCCCCCCCAAAAAAATAGAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAWCACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTCATCAAATAATTGATCTTAAAATAATTCATGTTAATCATTTTGAATCAATCAGTGTACTTCAGTCAGTTTTTTTTTGACAGGTCATATAATCTTAATTTACAACCCGAAAGGTCTGCACGTCTGGCGATGTGTCGGCACATACAAAAACTCGAAAGAATAAACACATTGACTCCAAAGCGGCAAGCCTGTTGTAAATCATGTAGGATGACGCCCTGCTTCCACACGTCCACCTAATTGGCATATCAGGTTACTTTTATGCCCCGCCCACCTTTGGTGGCTCATTATCTGCACAATAATCTCCAGTTGCTTTTCGACTTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGGGCACTCTATGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>GACTAGAAACTTCGAATTGAATATG</pcr_primer_p2>
		<pcr_amplicon_size>470</pcr_amplicon_size>
		<canonical_amplicon>GAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAACACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTC</canonical_amplicon>
		<polymorphic_amplicon>GAAGGGCACTCTATGAAAAAGGACCCCCCCCCCCTTCAAAATGTGTTTTGAAATTAGAAAATTTCTGTACTTTTTCAGTGGAAAATATTCCGGGAACTTCACAATTTAATAAAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCATATTTTCATGAATTTTGGACAAAATTTTTTCGAATTTTTCGATAATTTCGAAAAAAACTGGCCGAAAAAACAGAAGGGCCTTTCTGATTGAAGGGCCCCTGTAAGAAAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGAACCGGCCTTTCTAATACAGGTTTTACGGTACATGTTGAATAGTGGAGTCCAGGTACAGACTACTGAAAATGGCCAAAAWCACCATTTTTAAATGAAAAATAGGTTTTTGTATATCTTATTGAATTGAAATGCATATTCAATTCGAAGTTTCTAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26283</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1057799</contig_pos>
        <strand>+</strand>
        <context>CCCGCCACCT[A/C]AGAGTTATCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATAATTCACACATCATCAAAGACGCAATTATATATTTCTCCCCGCCACCT</left_flank>
        <right_flank>AGAGTTATCTTTTCCAATTTAGCATTCCAAGTTGATATCGCTATGTGTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTTAGCAACGAAGACTACATCTTCAAGCTTCAAGAAACCATCTATCAAATGTCTCTGGCTCAGCAAAAACTTGGCCGCGAGTTGAATATTTGTCAGAACACTAACGTGGAGATCAACAACGAGTTGGACATTATCCAGAAGCAGCTCATAGCCGAGATGGAGGATCGAATGGAGGCAAAAGAAGGATCTCTCGAGGCAGCGATTATCGAGCTTGGGGTACAGCTGGACAAGTTGAACTCTTGATTTTCTACTTTCAAAAGAACTTTCTTTTGTAGGGTTTTTGTTTTCTATTCCTTTGCACTGACTATGTGAATGGCCTCCCTCACAATCAAATTCTATCCGAACTCCATATCTTAACTTTGCCCGCACATCAGATCAATCTAGCTTTCATGTTCCTGGATATAGCTACTCCCATTACTCGTTTCTATACATTGTGCACCGGAAATAATAATTCACACATCATCAAAGACGCAATTATATATTTCTCCCCGCCACCTAAGAGTTATCTTTTCCAATTTAGCATTCCAAGTTGATATCGCTATGTGTTGAGTTTCTTTTTCTCCAACCAGATATTCTGTCATCAGCTTTTTTACTTTAAATCAAAGTTCAATTGCTTAAACTTCAATGAATATTTTATTCAGGTGTTTCTTTTTATTTCCAGATCCAATAACCATCAAGTTCTTGCTCCTAACTTTTTTGCTCAAATTTGAGACGATAAAAAAAATATCATGACGTCATTTAGACAATGTGAAGTGAACTTTGATGTAGATCAAAATAATTCTGAATTTTCCTTATGGAAGTCTACATGAAGTGTGATAAGAAGGCACAAAGAAACTTGATAAATCACATTTTTGATGAATTGCACAACGTTATGTGTCGATAATGAAAGAAAAGATTTTAATGAACAAAACTTCAAGTACAAATTTTCTTATTGTGATTCTCTGTTCAAGGTACTGTAACTTTTTTGGACCTATGTCAAATTATTTCAGAAAATTAGC</canonical>
            <polymorphic>CAGTTAGCAACGAAGACTACATCTTCAAGCTTCAAGAAACCATCTATCAAATGTCTCTGGCTCAGCAAAAACTTGGCCGCGAGTTGAATATTTGTCAGAACACTAACGTGGAGATCAACAACGAGTTGGACATTATCCAGAAGCAGCTCATAGCCGAGATGGAGGATCGAATGGAGGCAAAAGAAGGATCTCTCGAGGCAGCGATTATCGAGCTTGGGGTACAGCTGGACAAGTTGAACTCTTGATTTTCTACTTTCAAAAGAACTTTCTTTTGTAGGGTTTTTGTTTTCTATTCCTTTGCACTGACTATGTGAATGGCCTCCCTCACAATCAAATTCTATCCGAACTCCATATCTTAACTTTGCCCGCACATCAGATCAATCTAGCTTTCATGTTCCTGGATATAGCTACTCCCATTACTCGTTTCTATACATTGTGCACCGGAAATAATAATTCACACATCATCAAAGACGCAATTATATATTTCTCCCCGCCACCTMAGAGTTATCTTTTCCAATTTAGCATTCCAAGTTGATATCGCTATGTGTTGAGTTTCTTTTTCTCCAACCAGATATTCTGTCATCAGCTTTTTTACTTTAAATCAAAGTTCAATTGCTTAAACTTCAATGAATATTTTATTCAGGTGTTTCTTTTTATTTCCAGATCCAATAACCATCAAGTTCTTGCTCCTAACTTTTTTGCTCAAATTTGAGACGATAAAAAAAATATCATGACGTCATTTAGACAATGTGAAGTGAACTTTGATGTAGATCAAAATAATTCTGAATTTTCCTTATGGAAGTCTACATGAAGTGTGATAAGAAGGCACAAAGAAACTTGATAAATCACATTTTTGATGAATTGCACAACGTTATGTGTCGATAATGAAAGAAAAGATTTTAATGAACAAAACTTCAAGTACAAATTTTCTTATTGTGATTCTCTGTTCAAGGTACTGTAACTTTTTTGGACCTATGTCAAATTATTTCAGAAAATTAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCTATCCGAACTCCATATC</pcr_primer_p1>
		<pcr_primer_p2>AGAATATCTGGTTGGAGAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAATTCTATCCGAACTCCATATCTTAACTTTGCCCGCACATCAGATCAATCTAGCTTTCATGTTCCTGGATATAGCTACTCCCATTACTCGTTTCTATACATTGTGCACCGGAAATAATAATTCACACATCATCAAAGACGCAATTATATATTTCTCCCCGCCACCTAAGAGTTATCTTTTCCAATTTAGCATTCCAAGTTGATATCGCTATGTGTTGAGTTTCTTTTTCTCCAACCAGATATTCT</canonical_amplicon>
		<polymorphic_amplicon>AAATTCTATCCGAACTCCATATCTTAACTTTGCCCGCACATCAGATCAATCTAGCTTTCATGTTCCTGGATATAGCTACTCCCATTACTCGTTTCTATACATTGTGCACCGGAAATAATAATTCACACATCATCAAAGACGCAATTATATATTTCTCCCCGCCACCTMAGAGTTATCTTTTCCAATTTAGCATTCCAAGTTGATATCGCTATGTGTTGAGTTTCTTTTTCTCCAACCAGATATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26284</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1057825</contig_pos>
        <strand>+</strand>
        <context>AATTTAGCAT[C/T]CCAAGTTGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTATATATTTCTCCCCGCCACCTAAGAGTTATCTTTTCCAATTTAGCAT</left_flank>
        <right_flank>CCAAGTTGATATCGCTATGTGTTGAGTTTCTTTTTCTCCAACCAGATATT</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCTTCAAGAAACCATCTATCAAATGTCTCTGGCTCAGCAAAAACTTGGCCGCGAGTTGAATATTTGTCAGAACACTAACGTGGAGATCAACAACGAGTTGGACATTATCCAGAAGCAGCTCATAGCCGAGATGGAGGATCGAATGGAGGCAAAAGAAGGATCTCTCGAGGCAGCGATTATCGAGCTTGGGGTACAGCTGGACAAGTTGAACTCTTGATTTTCTACTTTCAAAAGAACTTTCTTTTGTAGGGTTTTTGTTTTCTATTCCTTTGCACTGACTATGTGAATGGCCTCCCTCACAATCAAATTCTATCCGAACTCCATATCTTAACTTTGCCCGCACATCAGATCAATCTAGCTTTCATGTTCCTGGATATAGCTACTCCCATTACTCGTTTCTATACATTGTGCACCGGAAATAATAATTCACACATCATCAAAGACGCAATTATATATTTCTCCCCGCCACCTAAGAGTTATCTTTTCCAATTTAGCATTCCAAGTTGATATCGCTATGTGTTGAGTTTCTTTTTCTCCAACCAGATATTCTGTCATCAGCTTTTTTACTTTAAATCAAAGTTCAATTGCTTAAACTTCAATGAATATTTTATTCAGGTGTTTCTTTTTATTTCCAGATCCAATAACCATCAAGTTCTTGCTCCTAACTTTTTTGCTCAAATTTGAGACGATAAAAAAAATATCATGACGTCATTTAGACAATGTGAAGTGAACTTTGATGTAGATCAAAATAATTCTGAATTTTCCTTATGGAAGTCTACATGAAGTGTGATAAGAAGGCACAAAGAAACTTGATAAATCACATTTTTGATGAATTGCACAACGTTATGTGTCGATAATGAAAGAAAAGATTTTAATGAACAAAACTTCAAGTACAAATTTTCTTATTGTGATTCTCTGTTCAAGGTACTGTAACTTTTTTGGACCTATGTCAAATTATTTCAGAAAATTAGCAAGCAAATTTTTATTTTTAAATCTGA</canonical>
            <polymorphic>AAGCTTCAAGAAACCATCTATCAAATGTCTCTGGCTCAGCAAAAACTTGGCCGCGAGTTGAATATTTGTCAGAACACTAACGTGGAGATCAACAACGAGTTGGACATTATCCAGAAGCAGCTCATAGCCGAGATGGAGGATCGAATGGAGGCAAAAGAAGGATCTCTCGAGGCAGCGATTATCGAGCTTGGGGTACAGCTGGACAAGTTGAACTCTTGATTTTCTACTTTCAAAAGAACTTTCTTTTGTAGGGTTTTTGTTTTCTATTCCTTTGCACTGACTATGTGAATGGCCTCCCTCACAATCAAATTCTATCCGAACTCCATATCTTAACTTTGCCCGCACATCAGATCAATCTAGCTTTCATGTTCCTGGATATAGCTACTCCCATTACTCGTTTCTATACATTGTGCACCGGAAATAATAATTCACACATCATCAAAGACGCAATTATATATTTCTCCCCGCCACCTAAGAGTTATCTTTTCCAATTTAGCATYCCAAGTTGATATCGCTATGTGTTGAGTTTCTTTTTCTCCAACCAGATATTCTGTCATCAGCTTTTTTACTTTAAATCAAAGTTCAATTGCTTAAACTTCAATGAATATTTTATTCAGGTGTTTCTTTTTATTTCCAGATCCAATAACCATCAAGTTCTTGCTCCTAACTTTTTTGCTCAAATTTGAGACGATAAAAAAAATATCATGACGTCATTTAGACAATGTGAAGTGAACTTTGATGTAGATCAAAATAATTCTGAATTTTCCTTATGGAAGTCTACATGAAGTGTGATAAGAAGGCACAAAGAAACTTGATAAATCACATTTTTGATGAATTGCACAACGTTATGTGTCGATAATGAAAGAAAAGATTTTAATGAACAAAACTTCAAGTACAAATTTTCTTATTGTGATTCTCTGTTCAAGGTACTGTAACTTTTTTGGACCTATGTCAAATTATTTCAGAAAATTAGCAAGCAAATTTTTATTTTTAAATCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCTATCCGAACTCCATATC</pcr_primer_p1>
		<pcr_primer_p2>GACAGAATATCTGGTTGGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATTCTATCCGAACTCCATATCTTAACTTTGCCCGCACATCAGATCAATCTAGCTTTCATGTTCCTGGATATAGCTACTCCCATTACTCGTTTCTATACATTGTGCACCGGAAATAATAATTCACACATCATCAAAGACGCAATTATATATTTCTCCCCGCCACCTAAGAGTTATCTTTTCCAATTTAGCATTCCAAGTTGATATCGCTATGTGTTGAGTTTCTTTTTCTCCAACCAGATATTCTGTC</canonical_amplicon>
		<polymorphic_amplicon>AAATTCTATCCGAACTCCATATCTTAACTTTGCCCGCACATCAGATCAATCTAGCTTTCATGTTCCTGGATATAGCTACTCCCATTACTCGTTTCTATACATTGTGCACCGGAAATAATAATTCACACATCATCAAAGACGCAATTATATATTTCTCCCCGCCACCTAAGAGTTATCTTTTCCAATTTAGCATYCCAAGTTGATATCGCTATGTGTTGAGTTTCTTTTTCTCCAACCAGATATTCTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26285</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1057918</contig_pos>
        <strand>+</strand>
        <context>TCAATTGCTT[A/C]AACTTCAATR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAGATATTCTGTCATCAGCTTTTTTACTTTAAATCAAAGTTCAATTGCTT</left_flank>
        <right_flank>AACTTCAATGAATATTTTATTCAGGTGTTTCTTTTTATTTCCAGATCCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACGAGTTGGACATTATCCAGAAGCAGCTCATAGCCGAGATGGAGGATCGAATGGAGGCAAAAGAAGGATCTCTCGAGGCAGCGATTATCGAGCTTGGGGTACAGCTGGACAAGTTGAACTCTTGATTTTCTACTTTCAAAAGAACTTTCTTTTGTAGGGTTTTTGTTTTCTATTCCTTTGCACTGACTATGTGAATGGCCTCCCTCACAATCAAATTCTATCCGAACTCCATATCTTAACTTTGCCCGCACATCAGATCAATCTAGCTTTCATGTTCCTGGATATAGCTACTCCCATTACTCGTTTCTATACATTGTGCACCGGAAATAATAATTCACACATCATCAAAGACGCAATTATATATTTCTCCCCGCCACCTAAGAGTTATCTTTTCCAATTTAGCATTCCAAGTTGATATCGCTATGTGTTGAGTTTCTTTTTCTCCAACCAGATATTCTGTCATCAGCTTTTTTACTTTAAATCAAAGTTCAATTGCTTAAACTTCAATGAATATTTTATTCAGGTGTTTCTTTTTATTTCCAGATCCAATAACCATCAAGTTCTTGCTCCTAACTTTTTTGCTCAAATTTGAGACGATAAAAAAAATATCATGACGTCATTTAGACAATGTGAAGTGAACTTTGATGTAGATCAAAATAATTCTGAATTTTCCTTATGGAAGTCTACATGAAGTGTGATAAGAAGGCACAAAGAAACTTGATAAATCACATTTTTGATGAATTGCACAACGTTATGTGTCGATAATGAAAGAAAAGATTTTAATGAACAAAACTTCAAGTACAAATTTTCTTATTGTGATTCTCTGTTCAAGGTACTGTAACTTTTTTGGACCTATGTCAAATTATTTCAGAAAATTAGCAAGCAAATTTTTATTTTTAAATCTGAAGTACAGATCCTGAACCGAGTATTAAAAAATGTAATAAATAAATTGAGATATTATCGAGATCGCAATTTCAAAAAGAAATAAAAGGAGCATCT</canonical>
            <polymorphic>AACGAGTTGGACATTATCCAGAAGCAGCTCATAGCCGAGATGGAGGATCGAATGGAGGCAAAAGAAGGATCTCTCGAGGCAGCGATTATCGAGCTTGGGGTACAGCTGGACAAGTTGAACTCTTGATTTTCTACTTTCAAAAGAACTTTCTTTTGTAGGGTTTTTGTTTTCTATTCCTTTGCACTGACTATGTGAATGGCCTCCCTCACAATCAAATTCTATCCGAACTCCATATCTTAACTTTGCCCGCACATCAGATCAATCTAGCTTTCATGTTCCTGGATATAGCTACTCCCATTACTCGTTTCTATACATTGTGCACCGGAAATAATAATTCACACATCATCAAAGACGCAATTATATATTTCTCCCCGCCACCTAAGAGTTATCTTTTCCAATTTAGCATTCCAAGTTGATATCGCTATGTGTTGAGTTTCTTTTTCTCCAACCAGATATTCTGTCATCAGCTTTTTTACTTTAAATCAAAGTTCAATTGCTTMAACTTCAATGAATATTTTATTCAGGTGTTTCTTTTTATTTCCAGATCCAATAACCATCAAGTTCTTGCTCCTAACTTTTTTGCTCAAATTTGAGACGATAAAAAAAATATCATGACGTCATTTAGACAATGTGAAGTGAACTTTGATGTAGATCAAAATAATTCTGAATTTTCCTTATGGAAGTCTACATGAAGTGTGATAAGAAGGCACAAAGAAACTTGATAAATCACATTTTTGATGAATTGCACAACGTTATGTGTCGATAATGAAAGAAAAGATTTTAATGAACAAAACTTCAAGTACAAATTTTCTTATTGTGATTCTCTGTTCAAGGTACTGTAACTTTTTTGGACCTATGTCAAATTATTTCAGAAAATTAGCAAGCAAATTTTTATTTTTAAATCTGAAGTACAGATCCTGAACCGAGTATTAAAAAATGTAATAAATAAATTGAGATATTATCGAGATCGCAATTTCAAAAAGAAATAAAAGGAGCATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>283 241 237 117 70 32 20</canonical_bands>
                <polymorphic_bands>303 241 237 117 70 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTTTCTCCAACCAGATATTC</pcr_primer_p1>
		<pcr_primer_p2>AGACTTCCATAAGGAAAATTCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTTTCTCCAACCAGATATTCTGTCATCAGCTTTTTTACTTTAAATCAAAGTTCAATTGCTTAAACTTCAATGAATATTTTATTCAGGTGTTTCTTTTTATTTCCAGATCCAATAACCATCAAGTTCTTGCTCCTAACTTTTTTGCTCAAATTTGAGACGATAAAAAAAATATCATGACGTCATTTAGACAATGTGAAGTGAACTTTGATGTAGATCAAAATAATTCTGAATTTTCCTTATGGAAGTCT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTTCTCCAACCAGATATTCTGTCATCAGCTTTTTTACTTTAAATCAAAGTTCAATTGCTTMAACTTCAATGAATATTTTATTCAGGTGTTTCTTTTTATTTCCAGATCCAATAACCATCAAGTTCTTGCTCCTAACTTTTTTGCTCAAATTTGAGACGATAAAAAAAATATCATGACGTCATTTAGACAATGTGAAGTGAACTTTGATGTAGATCAAAATAATTCTGAATTTTCCTTATGGAAGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26286</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1057928</contig_pos>
        <strand>+</strand>
        <context>MAACTTCAAT[A/G]AATATTTTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCATCAGCTTTTTTACTTTAAATCAAAGTTCAATTGCTTAAACTTCAAT</left_flank>
        <right_flank>AATATTTTATTCAGGTGTTTCTTTTTATTTCCAGATCCAATAACCATCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATTATCCAGAAGCAGCTCATAGCCGAGATGGAGGATCGAATGGAGGCAAAAGAAGGATCTCTCGAGGCAGCGATTATCGAGCTTGGGGTACAGCTGGACAAGTTGAACTCTTGATTTTCTACTTTCAAAAGAACTTTCTTTTGTAGGGTTTTTGTTTTCTATTCCTTTGCACTGACTATGTGAATGGCCTCCCTCACAATCAAATTCTATCCGAACTCCATATCTTAACTTTGCCCGCACATCAGATCAATCTAGCTTTCATGTTCCTGGATATAGCTACTCCCATTACTCGTTTCTATACATTGTGCACCGGAAATAATAATTCACACATCATCAAAGACGCAATTATATATTTCTCCCCGCCACCTAAGAGTTATCTTTTCCAATTTAGCATTCCAAGTTGATATCGCTATGTGTTGAGTTTCTTTTTCTCCAACCAGATATTCTGTCATCAGCTTTTTTACTTTAAATCAAAGTTCAATTGCTTAAACTTCAATGAATATTTTATTCAGGTGTTTCTTTTTATTTCCAGATCCAATAACCATCAAGTTCTTGCTCCTAACTTTTTTGCTCAAATTTGAGACGATAAAAAAAATATCATGACGTCATTTAGACAATGTGAAGTGAACTTTGATGTAGATCAAAATAATTCTGAATTTTCCTTATGGAAGTCTACATGAAGTGTGATAAGAAGGCACAAAGAAACTTGATAAATCACATTTTTGATGAATTGCACAACGTTATGTGTCGATAATGAAAGAAAAGATTTTAATGAACAAAACTTCAAGTACAAATTTTCTTATTGTGATTCTCTGTTCAAGGTACTGTAACTTTTTTGGACCTATGTCAAATTATTTCAGAAAATTAGCAAGCAAATTTTTATTTTTAAATCTGAAGTACAGATCCTGAACCGAGTATTAAAAAATGTAATAAATAAATTGAGATATTATCGAGATCGCAATTTCAAAAAGAAATAAAAGGAGCATCTAAAGTTTCTC</canonical>
            <polymorphic>ACATTATCCAGAAGCAGCTCATAGCCGAGATGGAGGATCGAATGGAGGCAAAAGAAGGATCTCTCGAGGCAGCGATTATCGAGCTTGGGGTACAGCTGGACAAGTTGAACTCTTGATTTTCTACTTTCAAAAGAACTTTCTTTTGTAGGGTTTTTGTTTTCTATTCCTTTGCACTGACTATGTGAATGGCCTCCCTCACAATCAAATTCTATCCGAACTCCATATCTTAACTTTGCCCGCACATCAGATCAATCTAGCTTTCATGTTCCTGGATATAGCTACTCCCATTACTCGTTTCTATACATTGTGCACCGGAAATAATAATTCACACATCATCAAAGACGCAATTATATATTTCTCCCCGCCACCTAAGAGTTATCTTTTCCAATTTAGCATTCCAAGTTGATATCGCTATGTGTTGAGTTTCTTTTTCTCCAACCAGATATTCTGTCATCAGCTTTTTTACTTTAAATCAAAGTTCAATTGCTTAAACTTCAATRAATATTTTATTCAGGTGTTTCTTTTTATTTCCAGATCCAATAACCATCAAGTTCTTGCTCCTAACTTTTTTGCTCAAATTTGAGACGATAAAAAAAATATCATGACGTCATTTAGACAATGTGAAGTGAACTTTGATGTAGATCAAAATAATTCTGAATTTTCCTTATGGAAGTCTACATGAAGTGTGATAAGAAGGCACAAAGAAACTTGATAAATCACATTTTTGATGAATTGCACAACGTTATGTGTCGATAATGAAAGAAAAGATTTTAATGAACAAAACTTCAAGTACAAATTTTCTTATTGTGATTCTCTGTTCAAGGTACTGTAACTTTTTTGGACCTATGTCAAATTATTTCAGAAAATTAGCAAGCAAATTTTTATTTTTAAATCTGAAGTACAGATCCTGAACCGAGTATTAAAAAATGTAATAAATAAATTGAGATATTATCGAGATCGCAATTTCAAAAAGAAATAAAAGGAGCATCTAAAGTTTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGATATTCTGTCATCAGCTTTT</pcr_primer_p1>
		<pcr_primer_p2>CACACTTCATGTAGACTTCCATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAGATATTCTGTCATCAGCTTTTTTACTTTAAATCAAAGTTCAATTGCTTAAACTTCAATGAATATTTTATTCAGGTGTTTCTTTTTATTTCCAGATCCAATAACCATCAAGTTCTTGCTCCTAACTTTTTTGCTCAAATTTGAGACGATAAAAAAAATATCATGACGTCATTTAGACAATGTGAAGTGAACTTTGATGTAGATCAAAATAATTCTGAATTTTCCTTATGGAAGTCTACATGAAGTGTG</canonical_amplicon>
		<polymorphic_amplicon>CAGATATTCTGTCATCAGCTTTTTTACTTTAAATCAAAGTTCAATTGCTTAAACTTCAATRAATATTTTATTCAGGTGTTTCTTTTTATTTCCAGATCCAATAACCATCAAGTTCTTGCTCCTAACTTTTTTGCTCAAATTTGAGACGATAAAAAAAATATCATGACGTCATTTAGACAATGTGAAGTGAACTTTGATGTAGATCAAAATAATTCTGAATTTTCCTTATGGAAGTCTACATGAAGTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26287</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1062110</contig_pos>
        <strand>+</strand>
        <context>GGTTTTTAAG[A/G]TTCTTAATTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCCTTAATTTTTTTCAACAGAAGTTAGAAGTACACCATGGTTTTTAAG</left_flank>
        <right_flank>TTCTTAATTGATTGAAAAATTCGTGTACTTCTGATCCATTGACAACTGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTAAAATGTTTACCTAAACGAAGCTGCGAACCTTTTAGAGACAAAATTTCGATTCAGAAGTGCAAAAAATACAACTTGCTAAAAGATTTTGTACCCCCGAATCATGGATTTTGTACCCCTAAATCAGTTGTACCCCCTTGTACCCTCGAATCGTTGTACCCCCAGAATTTTTTGCACAAAATAGCATACCAGATGATGAAGCTCGAAGAGGTCTACAATCTCCAATAAGCTTATAAAGTGGTATTATGATCCAGGCCGGCATTTTTGGCCGTGTCGATTGCCTTATTTGAATTTCGTCCCGCACCCGTTAAATGCTGGTCGATTCTTGTTGGATTTTATAGATCTCACGAAGCTCTATGGTCTGATATGCTGTTTCTCTCACAATTTCAATTGTTAAGTAAGTTATCACCCGGAACCGGCCCAAAATTTAAGTAATTTTTTGAAAAGATTCCTTAATTTTTTTCAACAGAAGTTAGAAGTACACCATGGTTTTTAAGGTTCTTAATTGATTGAAAAATTCGTGTACTTCTGATCCATTGACAACTGGCTAGTAAGCTTCTTTTCAACTCCACCTTTTCTCTTTTTTTCAATTGTTTTTTCTTAGATTTTCCCAATGACGAATCTGTTTGCAGAACGGTTTCATAGACTGCGGTCCAAATACAGCCATCGGTCAGTTTGGAACGAGGATCACTTCGTATTGTTGCTCATTATTTGACTTCCCTATCACGACAGGAGAAAAAGTGTGTTGTAGAAGCACAATACGGGAAGAAGGAGAGTAAACTGTTTGGAGTTGCTAAGAAAACAATGACATGTTTAAAAAAACAAGTGAAACTTCTGTTTCTTTGAAGACCGATCTGAGTACTGTAAAGTAGCAAATGTCAAAAGTTGAAAAAGATTCGACAGTAGATCATTCAAAACATTCCAAGCATAACTTTGAACTTTTCGAGATTTGTCAAATTTGAATAGAAATATAAAATCTAGACACGGCCCTGGTATCT</canonical>
            <polymorphic>GTTTAAAATGTTTACCTAAACGAAGCTGCGAACCTTTTAGAGACAAAATTTCGATTCAGAAGTGCAAAAAATACAACTTGCTAAAAGATTTTGTACCCCCGAATCATGGATTTTGTACCCCTAAATCAGTTGTACCCCCTTGTACCCTCGAATCGTTGTACCCCCAGAATTTTTTGCACAAAATAGCATACCAGATGATGAAGCTCGAAGAGGTCTACAATCTCCAATAAGCTTATAAAGTGGTATTATGATCCAGGCCGGCATTTTTGGCCGTGTCGATTGCCTTATTTGAATTTCGTCCCGCACCCGTTAAATGCTGGTCGATTCTTGTTGGATTTTATAGATCTCACGAAGCTCTATGGTCTGATATGCTGTTTCTCTCACAATTTCAATTGTTAAGTAAGTTATCACCCGGAACCGGCCCAAAATTTAAGTAATTTTTTGAAAAGATTCCTTAATTTTTTTCAACAGAAGTTAGAAGTACACCATGGTTTTTAAGRTTCTTAATTGATTGAAAAATTCGTGTACTTCTGATCCATTGACAACTGGCTAGTAAGCTTCTTTTCAACTCCACCTTTTCTCTTTTTTTCAATTGTTTTTTCTTAGATTTTCCCAATGACGAATCTGTTTGCAGAACGGTTTCATAGACTGCGGTCCAAATACAGCCATCGGTCAGTTTGGAACGAGGATCACTTCGTATTGTTGCTCATTATTTGACTTCCCTATCACGACAGGAGAAAAAGTGTGTTGTAGAAGCACAATACGGGAAGAAGGAGAGTAAACTGTTTGGAGTTGCTAAGAAAACAATGACATGTTTAAAAAAACAAGTGAAACTTCTGTTTCTTTGAAGACCGATCTGAGTACTGTAAAGTAGCAAATGTCAAAAGTTGAAAAAGATTCGACAGTAGATCATTCAAAACATTCCAAGCATAACTTTGAACTTTTCGAGATTTGTCAAATTTGAATAGAAATATAAAATCTAGACACGGCCCTGGTATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGATTCTTGTTGGATTTTATAG</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAGCTTACTAGCCAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TCGATTCTTGTTGGATTTTATAGATCTCACGAAGCTCTATGGTCTGATATGCTGTTTCTCTCACAATTTCAATTGTTAAGTAAGTTATCACCCGGAACCGGCCCAAAATTTAAGTAATTTTTTGAAAAGATTCCTTAATTTTTTTCAACAGAAGTTAGAAGTACACCATGGTTTTTAAGGTTCTTAATTGATTGAAAAATTCGTGTACTTCTGATCCATTGACAACTGGCTAGTAAGCTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>TCGATTCTTGTTGGATTTTATAGATCTCACGAAGCTCTATGGTCTGATATGCTGTTTCTCTCACAATTTCAATTGTTAAGTAAGTTATCACCCGGAACCGGCCCAAAATTTAAGTAATTTTTTGAAAAGATTCCTTAATTTTTTTCAACAGAAGTTAGAAGTACACCATGGTTTTTAAGRTTCTTAATTGATTGAAAAATTCGTGTACTTCTGATCCATTGACAACTGGCTAGTAAGCTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26288</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1062133</contig_pos>
        <strand>+</strand>
        <context>TGAAAAATTC[C/T]TRTACTTCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTTAGAAGTACACCATGGTTTTTAAGGTTCTTAATTGATTGAAAAATTC</left_flank>
        <right_flank>TGTACTTCTGATCCATTGACAACTGGCTAGTAAGCTTCTTTTCAACTCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTGCGAACCTTTTAGAGACAAAATTTCGATTCAGAAGTGCAAAAAATACAACTTGCTAAAAGATTTTGTACCCCCGAATCATGGATTTTGTACCCCTAAATCAGTTGTACCCCCTTGTACCCTCGAATCGTTGTACCCCCAGAATTTTTTGCACAAAATAGCATACCAGATGATGAAGCTCGAAGAGGTCTACAATCTCCAATAAGCTTATAAAGTGGTATTATGATCCAGGCCGGCATTTTTGGCCGTGTCGATTGCCTTATTTGAATTTCGTCCCGCACCCGTTAAATGCTGGTCGATTCTTGTTGGATTTTATAGATCTCACGAAGCTCTATGGTCTGATATGCTGTTTCTCTCACAATTTCAATTGTTAAGTAAGTTATCACCCGGAACCGGCCCAAAATTTAAGTAATTTTTTGAAAAGATTCCTTAATTTTTTTCAACAGAAGTTAGAAGTACACCATGGTTTTTAAGGTTCTTAATTGATTGAAAAATTCGTGTACTTCTGATCCATTGACAACTGGCTAGTAAGCTTCTTTTCAACTCCACCTTTTCTCTTTTTTTCAATTGTTTTTTCTTAGATTTTCCCAATGACGAATCTGTTTGCAGAACGGTTTCATAGACTGCGGTCCAAATACAGCCATCGGTCAGTTTGGAACGAGGATCACTTCGTATTGTTGCTCATTATTTGACTTCCCTATCACGACAGGAGAAAAAGTGTGTTGTAGAAGCACAATACGGGAAGAAGGAGAGTAAACTGTTTGGAGTTGCTAAGAAAACAATGACATGTTTAAAAAAACAAGTGAAACTTCTGTTTCTTTGAAGACCGATCTGAGTACTGTAAAGTAGCAAATGTCAAAAGTTGAAAAAGATTCGACAGTAGATCATTCAAAACATTCCAAGCATAACTTTGAACTTTTCGAGATTTGTCAAATTTGAATAGAAATATAAAATCTAGACACGGCCCTGGTATCTGTTTAATGTAACACTTCATTCTT</canonical>
            <polymorphic>AGCTGCGAACCTTTTAGAGACAAAATTTCGATTCAGAAGTGCAAAAAATACAACTTGCTAAAAGATTTTGTACCCCCGAATCATGGATTTTGTACCCCTAAATCAGTTGTACCCCCTTGTACCCTCGAATCGTTGTACCCCCAGAATTTTTTGCACAAAATAGCATACCAGATGATGAAGCTCGAAGAGGTCTACAATCTCCAATAAGCTTATAAAGTGGTATTATGATCCAGGCCGGCATTTTTGGCCGTGTCGATTGCCTTATTTGAATTTCGTCCCGCACCCGTTAAATGCTGGTCGATTCTTGTTGGATTTTATAGATCTCACGAAGCTCTATGGTCTGATATGCTGTTTCTCTCACAATTTCAATTGTTAAGTAAGTTATCACCCGGAACCGGCCCAAAATTTAAGTAATTTTTTGAAAAGATTCCTTAATTTTTTTCAACAGAAGTTAGAAGTACACCATGGTTTTTAAGGTTCTTAATTGATTGAAAAATTCYTGTACTTCTGATCCATTGACAACTGGCTAGTAAGCTTCTTTTCAACTCCACCTTTTCTCTTTTTTTCAATTGTTTTTTCTTAGATTTTCCCAATGACGAATCTGTTTGCAGAACGGTTTCATAGACTGCGGTCCAAATACAGCCATCGGTCAGTTTGGAACGAGGATCACTTCGTATTGTTGCTCATTATTTGACTTCCCTATCACGACAGGAGAAAAAGTGTGTTGTAGAAGCACAATACGGGAAGAAGGAGAGTAAACTGTTTGGAGTTGCTAAGAAAACAATGACATGTTTAAAAAAACAAGTGAAACTTCTGTTTCTTTGAAGACCGATCTGAGTACTGTAAAGTAGCAAATGTCAAAAGTTGAAAAAGATTCGACAGTAGATCATTCAAAACATTCCAAGCATAACTTTGAACTTTTCGAGATTTGTCAAATTTGAATAGAAATATAAAATCTAGACACGGCCCTGGTATCTGTTTAATGTAACACTTCATTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>156 119 114 75 72 64 48 44 41 40 36 34 33 30 27 27 17 11 10 2</canonical_bands>
                <polymorphic_bands>156 119 114 88 75 72 64 44 41 36 34 33 30 27 27 17 11 10 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>268 255 243 192 42</canonical_bands>
                <polymorphic_bands>297 268 243 192</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACAGAAGTTAGAAGTACACCAT</pcr_primer_p1>
		<pcr_primer_p2>AATAATGAGCAACAATACGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAACAGAAGTTAGAAGTACACCATGGTTTTTAAGGTTCTTAATTGATTGAAAAATTCGTGTACTTCTGATCCATTGACAACTGGCTAGTAAGCTTCTTTTCAACTCCACCTTTTCTCTTTTTTTCAATTGTTTTTTCTTAGATTTTCCCAATGACGAATCTGTTTGCAGAACGGTTTCATAGACTGCGGTCCAAATACAGCCATCGGTCAGTTTGGAACGAGGATCACTTCGTATTGTTGCTCATTATT</canonical_amplicon>
		<polymorphic_amplicon>CAACAGAAGTTAGAAGTACACCATGGTTTTTAAGGTTCTTAATTGATTGAAAAATTCYTGTACTTCTGATCCATTGACAACTGGCTAGTAAGCTTCTTTTCAACTCCACCTTTTCTCTTTTTTTCAATTGTTTTTTCTTAGATTTTCCCAATGACGAATCTGTTTGCAGAACGGTTTCATAGACTGCGGTCCAAATACAGCCATCGGTCAGTTTGGAACGAGGATCACTTCGTATTGTTGCTCATTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26289</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1062135</contig_pos>
        <strand>+</strand>
        <context>AAAAATTCYT[A/G]TACTTCTGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAGAAGTACACCATGGTTTTTAAGGTTCTTAATTGATTGAAAAATTCGT</left_flank>
        <right_flank>TACTTCTGATCCATTGACAACTGGCTAGTAAGCTTCTTTTCAACTCCACC</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGCGAACCTTTTAGAGACAAAATTTCGATTCAGAAGTGCAAAAAATACAACTTGCTAAAAGATTTTGTACCCCCGAATCATGGATTTTGTACCCCTAAATCAGTTGTACCCCCTTGTACCCTCGAATCGTTGTACCCCCAGAATTTTTTGCACAAAATAGCATACCAGATGATGAAGCTCGAAGAGGTCTACAATCTCCAATAAGCTTATAAAGTGGTATTATGATCCAGGCCGGCATTTTTGGCCGTGTCGATTGCCTTATTTGAATTTCGTCCCGCACCCGTTAAATGCTGGTCGATTCTTGTTGGATTTTATAGATCTCACGAAGCTCTATGGTCTGATATGCTGTTTCTCTCACAATTTCAATTGTTAAGTAAGTTATCACCCGGAACCGGCCCAAAATTTAAGTAATTTTTTGAAAAGATTCCTTAATTTTTTTCAACAGAAGTTAGAAGTACACCATGGTTTTTAAGGTTCTTAATTGATTGAAAAATTCGTGTACTTCTGATCCATTGACAACTGGCTAGTAAGCTTCTTTTCAACTCCACCTTTTCTCTTTTTTTCAATTGTTTTTTCTTAGATTTTCCCAATGACGAATCTGTTTGCAGAACGGTTTCATAGACTGCGGTCCAAATACAGCCATCGGTCAGTTTGGAACGAGGATCACTTCGTATTGTTGCTCATTATTTGACTTCCCTATCACGACAGGAGAAAAAGTGTGTTGTAGAAGCACAATACGGGAAGAAGGAGAGTAAACTGTTTGGAGTTGCTAAGAAAACAATGACATGTTTAAAAAAACAAGTGAAACTTCTGTTTCTTTGAAGACCGATCTGAGTACTGTAAAGTAGCAAATGTCAAAAGTTGAAAAAGATTCGACAGTAGATCATTCAAAACATTCCAAGCATAACTTTGAACTTTTCGAGATTTGTCAAATTTGAATAGAAATATAAAATCTAGACACGGCCCTGGTATCTGTTTAATGTAACACTTCATTCTTAT</canonical>
            <polymorphic>CTGCGAACCTTTTAGAGACAAAATTTCGATTCAGAAGTGCAAAAAATACAACTTGCTAAAAGATTTTGTACCCCCGAATCATGGATTTTGTACCCCTAAATCAGTTGTACCCCCTTGTACCCTCGAATCGTTGTACCCCCAGAATTTTTTGCACAAAATAGCATACCAGATGATGAAGCTCGAAGAGGTCTACAATCTCCAATAAGCTTATAAAGTGGTATTATGATCCAGGCCGGCATTTTTGGCCGTGTCGATTGCCTTATTTGAATTTCGTCCCGCACCCGTTAAATGCTGGTCGATTCTTGTTGGATTTTATAGATCTCACGAAGCTCTATGGTCTGATATGCTGTTTCTCTCACAATTTCAATTGTTAAGTAAGTTATCACCCGGAACCGGCCCAAAATTTAAGTAATTTTTTGAAAAGATTCCTTAATTTTTTTCAACAGAAGTTAGAAGTACACCATGGTTTTTAAGGTTCTTAATTGATTGAAAAATTCGTRTACTTCTGATCCATTGACAACTGGCTAGTAAGCTTCTTTTCAACTCCACCTTTTCTCTTTTTTTCAATTGTTTTTTCTTAGATTTTCCCAATGACGAATCTGTTTGCAGAACGGTTTCATAGACTGCGGTCCAAATACAGCCATCGGTCAGTTTGGAACGAGGATCACTTCGTATTGTTGCTCATTATTTGACTTCCCTATCACGACAGGAGAAAAAGTGTGTTGTAGAAGCACAATACGGGAAGAAGGAGAGTAAACTGTTTGGAGTTGCTAAGAAAACAATGACATGTTTAAAAAAACAAGTGAAACTTCTGTTTCTTTGAAGACCGATCTGAGTACTGTAAAGTAGCAAATGTCAAAAGTTGAAAAAGATTCGACAGTAGATCATTCAAAACATTCCAAGCATAACTTTGAACTTTTCGAGATTTGTCAAATTTGAATAGAAATATAAAATCTAGACACGGCCCTGGTATCTGTTTAATGTAACACTTCATTCTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>336 323 163 69 44 22 17 16 10</canonical_bands>
                <polymorphic_bands>380 323 163 69 22 17 16 10</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>156 119 114 75 72 64 48 44 40 39 36 34 33 30 27 27 17 12 11 2</canonical_bands>
                <polymorphic_bands>156 119 114 88 75 72 64 44 39 36 34 33 30 27 27 17 12 11 2</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>455 336 165 44</canonical_bands>
                <polymorphic_bands>455 380 165</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACAGAAGTTAGAAGTACACCAT</pcr_primer_p1>
		<pcr_primer_p2>AATAATGAGCAACAATACGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAACAGAAGTTAGAAGTACACCATGGTTTTTAAGGTTCTTAATTGATTGAAAAATTCGTGTACTTCTGATCCATTGACAACTGGCTAGTAAGCTTCTTTTCAACTCCACCTTTTCTCTTTTTTTCAATTGTTTTTTCTTAGATTTTCCCAATGACGAATCTGTTTGCAGAACGGTTTCATAGACTGCGGTCCAAATACAGCCATCGGTCAGTTTGGAACGAGGATCACTTCGTATTGTTGCTCATTATT</canonical_amplicon>
		<polymorphic_amplicon>CAACAGAAGTTAGAAGTACACCATGGTTTTTAAGGTTCTTAATTGATTGAAAAATTCGTRTACTTCTGATCCATTGACAACTGGCTAGTAAGCTTCTTTTCAACTCCACCTTTTCTCTTTTTTTCAATTGTTTTTTCTTAGATTTTCCCAATGACGAATCTGTTTGCAGAACGGTTTCATAGACTGCGGTCCAAATACAGCCATCGGTCAGTTTGGAACGAGGATCACTTCGTATTGTTGCTCATTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26290</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1062428</contig_pos>
        <strand>+</strand>
        <context>TGACATGTTT[A/G]AAAAAACAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGAAGGAGAGTAAACTGTTTGGAGTTGCTAAGAAAACAATGACATGTTT</left_flank>
        <right_flank>AAAAAACAAGTGAAACTTCTGTTTCTTTGAAGACCGATCTGAGTACTGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTCGATTCTTGTTGGATTTTATAGATCTCACGAAGCTCTATGGTCTGATATGCTGTTTCTCTCACAATTTCAATTGTTAAGTAAGTTATCACCCGGAACCGGCCCAAAATTTAAGTAATTTTTTGAAAAGATTCCTTAATTTTTTTCAACAGAAGTTAGAAGTACACCATGGTTTTTAAGGTTCTTAATTGATTGAAAAATTCGTGTACTTCTGATCCATTGACAACTGGCTAGTAAGCTTCTTTTCAACTCCACCTTTTCTCTTTTTTTCAATTGTTTTTTCTTAGATTTTCCCAATGACGAATCTGTTTGCAGAACGGTTTCATAGACTGCGGTCCAAATACAGCCATCGGTCAGTTTGGAACGAGGATCACTTCGTATTGTTGCTCATTATTTGACTTCCCTATCACGACAGGAGAAAAAGTGTGTTGTAGAAGCACAATACGGGAAGAAGGAGAGTAAACTGTTTGGAGTTGCTAAGAAAACAATGACATGTTTAAAAAAACAAGTGAAACTTCTGTTTCTTTGAAGACCGATCTGAGTACTGTAAAGTAGCAAATGTCAAAAGTTGAAAAAGATTCGACAGTAGATCATTCAAAACATTCCAAGCATAACTTTGAACTTTTCGAGATTTGTCAAATTTGAATAGAAATATAAAATCTAGACACGGCCCTGGTATCTGTTTAATGTAACACTTCATTCTTATCAATCCTCATTCAAAATGATCTTTTTGAATCGTTTGGTCCACATGGTCTCCACATGGTTTGTTTCTCCGAAAAATCAGAATTTGCAAAACCCTCGTGATTTGAGAATACTAGTTCTTTGGATTATTCAAGATCTTCCCAAAATCATGCCATAAAATCAGTTCACATCGATCACTGTTTGACCAAAGTATATAACAGGTGCGGAGGTGTGAGTATGAAATTGGTACGTATTACATTGATAAAATAACAAGTTTCTCTCGACATTTTTTTTCAGAAGAGAAGAACGTACAAGTAA</canonical>
            <polymorphic>GGTCGATTCTTGTTGGATTTTATAGATCTCACGAAGCTCTATGGTCTGATATGCTGTTTCTCTCACAATTTCAATTGTTAAGTAAGTTATCACCCGGAACCGGCCCAAAATTTAAGTAATTTTTTGAAAAGATTCCTTAATTTTTTTCAACAGAAGTTAGAAGTACACCATGGTTTTTAAGGTTCTTAATTGATTGAAAAATTCGTGTACTTCTGATCCATTGACAACTGGCTAGTAAGCTTCTTTTCAACTCCACCTTTTCTCTTTTTTTCAATTGTTTTTTCTTAGATTTTCCCAATGACGAATCTGTTTGCAGAACGGTTTCATAGACTGCGGTCCAAATACAGCCATCGGTCAGTTTGGAACGAGGATCACTTCGTATTGTTGCTCATTATTTGACTTCCCTATCACGACAGGAGAAAAAGTGTGTTGTAGAAGCACAATACGGGAAGAAGGAGAGTAAACTGTTTGGAGTTGCTAAGAAAACAATGACATGTTTRAAAAAACAAGTGAAACTTCTGTTTCTTTGAAGACCGATCTGAGTACTGTAAAGTAGCAAATGTCAAAAGTTGAAAAAGATTCGACAGTAGATCATTCAAAACATTCCAAGCATAACTTTGAACTTTTCGAGATTTGTCAAATTTGAATAGAAATATAAAATCTAGACACGGCCCTGGTATCTGTTTAATGTAACACTTCATTCTTATCAATCCTCATTCAAAATGATCTTTTTGAATCGTTTGGTCCACATGGTCTCCACATGGTTTGTTTCTCCGAAAAATCAGAATTTGCAAAACCCTCGTGATTTGAGAATACTAGTTCTTTGGATTATTCAAGATCTTCCCAAAATCATGCCATAAAATCAGTTCACATCGATCACTGTTTGACCAAAGTATATAACAGGTGCGGAGGTGTGAGTATGAAATTGGTACGTATTACATTGATAAAATAACAAGTTTCTCTCGACATTTTTTTTCAGAAGAGAAGAACGTACAAGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>315 312 187 78 40 34 25 9</canonical_bands>
                <polymorphic_bands>499 315 78 40 34 25 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCATTATTTGACTTCCCTATCA</pcr_primer_p1>
		<pcr_primer_p2>ACAAATCTCGAAAAGTTCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCATTATTTGACTTCCCTATCACGACAGGAGAAAAAGTGTGTTGTAGAAGCACAATACGGGAAGAAGGAGAGTAAACTGTTTGGAGTTGCTAAGAAAACAATGACATGTTTAAAAAAACAAGTGAAACTTCTGTTTCTTTGAAGACCGATCTGAGTACTGTAAAGTAGCAAATGTCAAAAGTTGAAAAAGATTCGACAGTAGATCATTCAAAACATTCCAAGCATAACTTTGAACTTTTCGAGATTTGT</canonical_amplicon>
		<polymorphic_amplicon>CTCATTATTTGACTTCCCTATCACGACAGGAGAAAAAGTGTGTTGTAGAAGCACAATACGGGAAGAAGGAGAGTAAACTGTTTGGAGTTGCTAAGAAAACAATGACATGTTTRAAAAAACAAGTGAAACTTCTGTTTCTTTGAAGACCGATCTGAGTACTGTAAAGTAGCAAATGTCAAAAGTTGAAAAAGATTCGACAGTAGATCATTCAAAACATTCCAAGCATAACTTTGAACTTTTCGAGATTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26291</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1078242</contig_pos>
        <strand>+</strand>
        <context>AATATCGTTC[C/T]TCAGTTGTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATAGGCACACAAAGCTGTGGACGCGCATGCTCTCGTTTGAATATCGTTC</left_flank>
        <right_flank>TCAGTTGTGAGCAGCCATCTTTTTCGATTTCCATTTGATCCAAAAAGTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCGGTCATTTTTTCCGAAATTTTTCAGCGAGGTCTCCATTAAAACTCATGAAAATTTATCGATTTCACCAAAATTGAGCAAACTTTTTAACAAAAGATTTTGTCAATGAACTTCTATAAAATAGTAGAATTTGTGGAAAACAGCATATTTTGAAAAGAGGCCTTCCATTTTTCCAAACCTCTCTCGGATAGATCTTGCATTAGAGGGGCCCTTCTAATACAGGTTTCACGGGGTACTAAGAGCTCAATTGCTGAGCTCAATCGCGTTCTTTTCTCCCAAATTCAAATTTATGTTCCTCTCTTCTTCTTCTTTTTTTTTCGTTGCACTTTTCTCCCACTTTCCTTCATTTAACAACCCTTATCACACACTGTGTCGGCGTTGACTTTCGAAGGTTTTCTCATCAATTAACTCGAACTTTATAGCTTCGGAGGAAAAATGGGGCAGCCCCCATAGGCACACAAAGCTGTGGACGCGCATGCTCTCGTTTGAATATCGTTCTTCAGTTGTGAGCAGCCATCTTTTTCGATTTCCATTTGATCCAAAAAGTTTCAAACTTTCAAATTTTACCGCATTTTTTTCTGTCGGTGTCCCACTGACCGTTTTCATGCCTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACCTTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTTCGTAACCTCTTACCTCCAATAAACCAGTTTTAATTACAGGCCTATCCAGTTGGATCTTCAATTTTCAAATCGCGGAGAGTCCCTCAAATCTTCACAGGTCAATTTATAACTACCTTTTCCAAAGTATCCCCCGCCCTCTTATC</canonical>
            <polymorphic>GTCGGTCATTTTTTCCGAAATTTTTCAGCGAGGTCTCCATTAAAACTCATGAAAATTTATCGATTTCACCAAAATTGAGCAAACTTTTTAACAAAAGATTTTGTCAATGAACTTCTATAAAATAGTAGAATTTGTGGAAAACAGCATATTTTGAAAAGAGGCCTTCCATTTTTCCAAACCTCTCTCGGATAGATCTTGCATTAGAGGGGCCCTTCTAATACAGGTTTCACGGGGTACTAAGAGCTCAATTGCTGAGCTCAATCGCGTTCTTTTCTCCCAAATTCAAATTTATGTTCCTCTCTTCTTCTTCTTTTTTTTTCGTTGCACTTTTCTCCCACTTTCCTTCATTTAACAACCCTTATCACACACTGTGTCGGCGTTGACTTTCGAAGGTTTTCTCATCAATTAACTCGAACTTTATAGCTTCGGAGGAAAAATGGGGCAGCCCCCATAGGCACACAAAGCTGTGGACGCGCATGCTCTCGTTTGAATATCGTTCYTCAGTTGTGAGCAGCCATCTTTTTCGATTTCCATTTGATCCAAAAAGTTTCAAACTTTCAAATTTTACCGCATTTTTTTCTGTCGGTGTCCCACTGACCGTTTTCATGCCTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACCTTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTTCGTAACCTCTTACCTCCAATAAACCAGTTTTAATTACAGGCCTATCCAGTTGGATCTTCAATTTTCAAATCGCGGAGAGTCCCTCAAATCTTCACAGGTCAATTTATAACTACCTTTTCCAAAGTATCCCCCGCCCTCTTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCATCAATTAACTCGAACT</pcr_primer_p1>
		<pcr_primer_p2>GCAAAAGGTAAAACTCATACG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCATCAATTAACTCGAACTTTATAGCTTCGGAGGAAAAATGGGGCAGCCCCCATAGGCACACAAAGCTGTGGACGCGCATGCTCTCGTTTGAATATCGTTCTTCAGTTGTGAGCAGCCATCTTTTTCGATTTCCATTTGATCCAAAAAGTTTCAAACTTTCAAATTTTACCGCATTTTTTTCTGTCGGTGTCCCACTGACCGTTTTCATGCCTACTCACCCGTATGAGTTTTACCTTTTGC</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCATCAATTAACTCGAACTTTATAGCTTCGGAGGAAAAATGGGGCAGCCCCCATAGGCACACAAAGCTGTGGACGCGCATGCTCTCGTTTGAATATCGTTCYTCAGTTGTGAGCAGCCATCTTTTTCGATTTCCATTTGATCCAAAAAGTTTCAAACTTTCAAATTTTACCGCATTTTTTTCTGTCGGTGTCCCACTGACCGTTTTCATGCCTACTCACCCGTATGAGTTTTACCTTTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26292</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1078434</contig_pos>
        <strand>+</strand>
        <context>AAAGAGGAAT[A/T]ATTTCTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAAT</left_flank>
        <right_flank>ATTTCTTTTTAAACCTTTTTCTGAAAAACCTTTCTTCGAAATTTTTGAAC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTTGCATTAGAGGGGCCCTTCTAATACAGGTTTCACGGGGTACTAAGAGCTCAATTGCTGAGCTCAATCGCGTTCTTTTCTCCCAAATTCAAATTTATGTTCCTCTCTTCTTCTTCTTTTTTTTTCGTTGCACTTTTCTCCCACTTTCCTTCATTTAACAACCCTTATCACACACTGTGTCGGCGTTGACTTTCGAAGGTTTTCTCATCAATTAACTCGAACTTTATAGCTTCGGAGGAAAAATGGGGCAGCCCCCATAGGCACACAAAGCTGTGGACGCGCATGCTCTCGTTTGAATATCGTTCTTCAGTTGTGAGCAGCCATCTTTTTCGATTTCCATTTGATCCAAAAAGTTTCAAACTTTCAAATTTTACCGCATTTTTTTCTGTCGGTGTCCCACTGACCGTTTTCATGCCTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACCTTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTTCGTAACCTCTTACCTCCAATAAACCAGTTTTAATTACAGGCCTATCCAGTTGGATCTTCAATTTTCAAATCGCGGAGAGTCCCTCAAATCTTCACAGGTCAATTTATAACTACCTTTTCCAAAGTATCCCCCGCCCTCTTATCGTCATAGTTCATCTCAATTTTAAACCCCCGAAAGGGTGGTGCCTAGTACCGTGTCTTCGCATCCTTCGTTCCAACCAAGAGCAATATGATCGGTTCAAAACCTTTCGGCGCCAGACCGTTAGCGCGTCACGGCCGCCTTCATCCACCTTGATTGGCGCAGCGCTCTCCAAGGACGTGACACCCAAAAAGATG</canonical>
            <polymorphic>ATCTTGCATTAGAGGGGCCCTTCTAATACAGGTTTCACGGGGTACTAAGAGCTCAATTGCTGAGCTCAATCGCGTTCTTTTCTCCCAAATTCAAATTTATGTTCCTCTCTTCTTCTTCTTTTTTTTTCGTTGCACTTTTCTCCCACTTTCCTTCATTTAACAACCCTTATCACACACTGTGTCGGCGTTGACTTTCGAAGGTTTTCTCATCAATTAACTCGAACTTTATAGCTTCGGAGGAAAAATGGGGCAGCCCCCATAGGCACACAAAGCTGTGGACGCGCATGCTCTCGTTTGAATATCGTTCTTCAGTTGTGAGCAGCCATCTTTTTCGATTTCCATTTGATCCAAAAAGTTTCAAACTTTCAAATTTTACCGCATTTTTTTCTGTCGGTGTCCCACTGACCGTTTTCATGCCTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATWATTTCTTTTTAAACCTTTTTCTGAAAAACCTTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTTCGTAACCTCTTACCTCCAATAAACCAGTTTTAATTACAGGCCTATCCAGTTGGATCTTCAATTTTCAAATCGCGGAGAGTCCCTCAAATCTTCACAGGTCAATTTATAACTACCTTTTCCAAAGTATCCCCCGCCCTCTTATCGTCATAGTTCATCTCAATTTTAAACCCCCGAAAGGGTGGTGCCTAGTACCGTGTCTTCGCATCCTTCGTTCCAACCAAGAGCAATATGATCGGTTCAAAACCTTTCGGCGCCAGACCGTTAGCGCGTCACGGCCGCCTTCATCCACCTTGATTGGCGCAGCGCTCTCCAAGGACGTGACACCCAAAAAGATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>177 157 118 112 58 54 50 43 41 35 33 28 23 20 16 15 14 6</canonical_bands>
                <polymorphic_bands>177 157 118 112 59 58 54 50 41 35 33 28 23 20 15 14 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTACTCACCCGTATGAGTTTTAC</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGGGGTAAAATAATTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACCTTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATWATTTCTTTTTAAACCTTTTTCTGAAAAACCTTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26293</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1078462</contig_pos>
        <strand>+</strand>
        <context>TTTCTGAAAA[A/C]YMKKTCTTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAA</left_flank>
        <right_flank>CCTTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGGTTTCACGGGGTACTAAGAGCTCAATTGCTGAGCTCAATCGCGTTCTTTTCTCCCAAATTCAAATTTATGTTCCTCTCTTCTTCTTCTTTTTTTTTCGTTGCACTTTTCTCCCACTTTCCTTCATTTAACAACCCTTATCACACACTGTGTCGGCGTTGACTTTCGAAGGTTTTCTCATCAATTAACTCGAACTTTATAGCTTCGGAGGAAAAATGGGGCAGCCCCCATAGGCACACAAAGCTGTGGACGCGCATGCTCTCGTTTGAATATCGTTCTTCAGTTGTGAGCAGCCATCTTTTTCGATTTCCATTTGATCCAAAAAGTTTCAAACTTTCAAATTTTACCGCATTTTTTTCTGTCGGTGTCCCACTGACCGTTTTCATGCCTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACCTTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTTCGTAACCTCTTACCTCCAATAAACCAGTTTTAATTACAGGCCTATCCAGTTGGATCTTCAATTTTCAAATCGCGGAGAGTCCCTCAAATCTTCACAGGTCAATTTATAACTACCTTTTCCAAAGTATCCCCCGCCCTCTTATCGTCATAGTTCATCTCAATTTTAAACCCCCGAAAGGGTGGTGCCTAGTACCGTGTCTTCGCATCCTTCGTTCCAACCAAGAGCAATATGATCGGTTCAAAACCTTTCGGCGCCAGACCGTTAGCGCGTCACGGCCGCCTTCATCCACCTTGATTGGCGCAGCGCTCTCCAAGGACGTGACACCCAAAAAGATGGAATCTTTATTAGTATGCCAATATGGTT</canonical>
            <polymorphic>CAGGTTTCACGGGGTACTAAGAGCTCAATTGCTGAGCTCAATCGCGTTCTTTTCTCCCAAATTCAAATTTATGTTCCTCTCTTCTTCTTCTTTTTTTTTCGTTGCACTTTTCTCCCACTTTCCTTCATTTAACAACCCTTATCACACACTGTGTCGGCGTTGACTTTCGAAGGTTTTCTCATCAATTAACTCGAACTTTATAGCTTCGGAGGAAAAATGGGGCAGCCCCCATAGGCACACAAAGCTGTGGACGCGCATGCTCTCGTTTGAATATCGTTCTTCAGTTGTGAGCAGCCATCTTTTTCGATTTCCATTTGATCCAAAAAGTTTCAAACTTTCAAATTTTACCGCATTTTTTTCTGTCGGTGTCCCACTGACCGTTTTCATGCCTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAMCCTTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTTCGTAACCTCTTACCTCCAATAAACCAGTTTTAATTACAGGCCTATCCAGTTGGATCTTCAATTTTCAAATCGCGGAGAGTCCCTCAAATCTTCACAGGTCAATTTATAACTACCTTTTCCAAAGTATCCCCCGCCCTCTTATCGTCATAGTTCATCTCAATTTTAAACCCCCGAAAGGGTGGTGCCTAGTACCGTGTCTTCGCATCCTTCGTTCCAACCAAGAGCAATATGATCGGTTCAAAACCTTTCGGCGCCAGACCGTTAGCGCGTCACGGCCGCCTTCATCCACCTTGATTGGCGCAGCGCTCTCCAAGGACGTGACACCCAAAAAGATGGAATCTTTATTAGTATGCCAATATGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTACTCACCCGTATGAGTTTTAC</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGGGGTAAAATAATTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACCTTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAMCCTTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26294</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1078463</contig_pos>
        <strand>+</strand>
        <context>TTCTGAAAAM[C/T]MKKTCTTCGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAA</left_flank>
        <right_flank>CTTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTTTCACGGGGTACTAAGAGCTCAATTGCTGAGCTCAATCGCGTTCTTTTCTCCCAAATTCAAATTTATGTTCCTCTCTTCTTCTTCTTTTTTTTTCGTTGCACTTTTCTCCCACTTTCCTTCATTTAACAACCCTTATCACACACTGTGTCGGCGTTGACTTTCGAAGGTTTTCTCATCAATTAACTCGAACTTTATAGCTTCGGAGGAAAAATGGGGCAGCCCCCATAGGCACACAAAGCTGTGGACGCGCATGCTCTCGTTTGAATATCGTTCTTCAGTTGTGAGCAGCCATCTTTTTCGATTTCCATTTGATCCAAAAAGTTTCAAACTTTCAAATTTTACCGCATTTTTTTCTGTCGGTGTCCCACTGACCGTTTTCATGCCTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACCTTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTTCGTAACCTCTTACCTCCAATAAACCAGTTTTAATTACAGGCCTATCCAGTTGGATCTTCAATTTTCAAATCGCGGAGAGTCCCTCAAATCTTCACAGGTCAATTTATAACTACCTTTTCCAAAGTATCCCCCGCCCTCTTATCGTCATAGTTCATCTCAATTTTAAACCCCCGAAAGGGTGGTGCCTAGTACCGTGTCTTCGCATCCTTCGTTCCAACCAAGAGCAATATGATCGGTTCAAAACCTTTCGGCGCCAGACCGTTAGCGCGTCACGGCCGCCTTCATCCACCTTGATTGGCGCAGCGCTCTCCAAGGACGTGACACCCAAAAAGATGGAATCTTTATTAGTATGCCAATATGGTTA</canonical>
            <polymorphic>AGGTTTCACGGGGTACTAAGAGCTCAATTGCTGAGCTCAATCGCGTTCTTTTCTCCCAAATTCAAATTTATGTTCCTCTCTTCTTCTTCTTTTTTTTTCGTTGCACTTTTCTCCCACTTTCCTTCATTTAACAACCCTTATCACACACTGTGTCGGCGTTGACTTTCGAAGGTTTTCTCATCAATTAACTCGAACTTTATAGCTTCGGAGGAAAAATGGGGCAGCCCCCATAGGCACACAAAGCTGTGGACGCGCATGCTCTCGTTTGAATATCGTTCTTCAGTTGTGAGCAGCCATCTTTTTCGATTTCCATTTGATCCAAAAAGTTTCAAACTTTCAAATTTTACCGCATTTTTTTCTGTCGGTGTCCCACTGACCGTTTTCATGCCTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAAYCTTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTTCGTAACCTCTTACCTCCAATAAACCAGTTTTAATTACAGGCCTATCCAGTTGGATCTTCAATTTTCAAATCGCGGAGAGTCCCTCAAATCTTCACAGGTCAATTTATAACTACCTTTTCCAAAGTATCCCCCGCCCTCTTATCGTCATAGTTCATCTCAATTTTAAACCCCCGAAAGGGTGGTGCCTAGTACCGTGTCTTCGCATCCTTCGTTCCAACCAAGAGCAATATGATCGGTTCAAAACCTTTCGGCGCCAGACCGTTAGCGCGTCACGGCCGCCTTCATCCACCTTGATTGGCGCAGCGCTCTCCAAGGACGTGACACCCAAAAAGATGGAATCTTTATTAGTATGCCAATATGGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTACTCACCCGTATGAGTTTTAC</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGGGGTAAAATAATTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACCTTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAAYCTTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26295</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1078464</contig_pos>
        <strand>+</strand>
        <context>TCTGAAAAMY[A/C]KKTCTTCGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAAC</left_flank>
        <right_flank>TTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTTCACGGGGTACTAAGAGCTCAATTGCTGAGCTCAATCGCGTTCTTTTCTCCCAAATTCAAATTTATGTTCCTCTCTTCTTCTTCTTTTTTTTTCGTTGCACTTTTCTCCCACTTTCCTTCATTTAACAACCCTTATCACACACTGTGTCGGCGTTGACTTTCGAAGGTTTTCTCATCAATTAACTCGAACTTTATAGCTTCGGAGGAAAAATGGGGCAGCCCCCATAGGCACACAAAGCTGTGGACGCGCATGCTCTCGTTTGAATATCGTTCTTCAGTTGTGAGCAGCCATCTTTTTCGATTTCCATTTGATCCAAAAAGTTTCAAACTTTCAAATTTTACCGCATTTTTTTCTGTCGGTGTCCCACTGACCGTTTTCATGCCTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACCTTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTTCGTAACCTCTTACCTCCAATAAACCAGTTTTAATTACAGGCCTATCCAGTTGGATCTTCAATTTTCAAATCGCGGAGAGTCCCTCAAATCTTCACAGGTCAATTTATAACTACCTTTTCCAAAGTATCCCCCGCCCTCTTATCGTCATAGTTCATCTCAATTTTAAACCCCCGAAAGGGTGGTGCCTAGTACCGTGTCTTCGCATCCTTCGTTCCAACCAAGAGCAATATGATCGGTTCAAAACCTTTCGGCGCCAGACCGTTAGCGCGTCACGGCCGCCTTCATCCACCTTGATTGGCGCAGCGCTCTCCAAGGACGTGACACCCAAAAAGATGGAATCTTTATTAGTATGCCAATATGGTTAG</canonical>
            <polymorphic>GGTTTCACGGGGTACTAAGAGCTCAATTGCTGAGCTCAATCGCGTTCTTTTCTCCCAAATTCAAATTTATGTTCCTCTCTTCTTCTTCTTTTTTTTTCGTTGCACTTTTCTCCCACTTTCCTTCATTTAACAACCCTTATCACACACTGTGTCGGCGTTGACTTTCGAAGGTTTTCTCATCAATTAACTCGAACTTTATAGCTTCGGAGGAAAAATGGGGCAGCCCCCATAGGCACACAAAGCTGTGGACGCGCATGCTCTCGTTTGAATATCGTTCTTCAGTTGTGAGCAGCCATCTTTTTCGATTTCCATTTGATCCAAAAAGTTTCAAACTTTCAAATTTTACCGCATTTTTTTCTGTCGGTGTCCCACTGACCGTTTTCATGCCTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACMTTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTTCGTAACCTCTTACCTCCAATAAACCAGTTTTAATTACAGGCCTATCCAGTTGGATCTTCAATTTTCAAATCGCGGAGAGTCCCTCAAATCTTCACAGGTCAATTTATAACTACCTTTTCCAAAGTATCCCCCGCCCTCTTATCGTCATAGTTCATCTCAATTTTAAACCCCCGAAAGGGTGGTGCCTAGTACCGTGTCTTCGCATCCTTCGTTCCAACCAAGAGCAATATGATCGGTTCAAAACCTTTCGGCGCCAGACCGTTAGCGCGTCACGGCCGCCTTCATCCACCTTGATTGGCGCAGCGCTCTCCAAGGACGTGACACCCAAAAAGATGGAATCTTTATTAGTATGCCAATATGGTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTACTCACCCGTATGAGTTTTAC</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGGGGTAAAATAATTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACCTTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACMTTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26296</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1078465</contig_pos>
        <strand>+</strand>
        <context>CTGAAAAMYM[G/T]KTCTTCGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACC</left_flank>
        <right_flank>TTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTCACGGGGTACTAAGAGCTCAATTGCTGAGCTCAATCGCGTTCTTTTCTCCCAAATTCAAATTTATGTTCCTCTCTTCTTCTTCTTTTTTTTTCGTTGCACTTTTCTCCCACTTTCCTTCATTTAACAACCCTTATCACACACTGTGTCGGCGTTGACTTTCGAAGGTTTTCTCATCAATTAACTCGAACTTTATAGCTTCGGAGGAAAAATGGGGCAGCCCCCATAGGCACACAAAGCTGTGGACGCGCATGCTCTCGTTTGAATATCGTTCTTCAGTTGTGAGCAGCCATCTTTTTCGATTTCCATTTGATCCAAAAAGTTTCAAACTTTCAAATTTTACCGCATTTTTTTCTGTCGGTGTCCCACTGACCGTTTTCATGCCTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACCTTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTTCGTAACCTCTTACCTCCAATAAACCAGTTTTAATTACAGGCCTATCCAGTTGGATCTTCAATTTTCAAATCGCGGAGAGTCCCTCAAATCTTCACAGGTCAATTTATAACTACCTTTTCCAAAGTATCCCCCGCCCTCTTATCGTCATAGTTCATCTCAATTTTAAACCCCCGAAAGGGTGGTGCCTAGTACCGTGTCTTCGCATCCTTCGTTCCAACCAAGAGCAATATGATCGGTTCAAAACCTTTCGGCGCCAGACCGTTAGCGCGTCACGGCCGCCTTCATCCACCTTGATTGGCGCAGCGCTCTCCAAGGACGTGACACCCAAAAAGATGGAATCTTTATTAGTATGCCAATATGGTTAGA</canonical>
            <polymorphic>GTTTCACGGGGTACTAAGAGCTCAATTGCTGAGCTCAATCGCGTTCTTTTCTCCCAAATTCAAATTTATGTTCCTCTCTTCTTCTTCTTTTTTTTTCGTTGCACTTTTCTCCCACTTTCCTTCATTTAACAACCCTTATCACACACTGTGTCGGCGTTGACTTTCGAAGGTTTTCTCATCAATTAACTCGAACTTTATAGCTTCGGAGGAAAAATGGGGCAGCCCCCATAGGCACACAAAGCTGTGGACGCGCATGCTCTCGTTTGAATATCGTTCTTCAGTTGTGAGCAGCCATCTTTTTCGATTTCCATTTGATCCAAAAAGTTTCAAACTTTCAAATTTTACCGCATTTTTTTCTGTCGGTGTCCCACTGACCGTTTTCATGCCTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACCKTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTTCGTAACCTCTTACCTCCAATAAACCAGTTTTAATTACAGGCCTATCCAGTTGGATCTTCAATTTTCAAATCGCGGAGAGTCCCTCAAATCTTCACAGGTCAATTTATAACTACCTTTTCCAAAGTATCCCCCGCCCTCTTATCGTCATAGTTCATCTCAATTTTAAACCCCCGAAAGGGTGGTGCCTAGTACCGTGTCTTCGCATCCTTCGTTCCAACCAAGAGCAATATGATCGGTTCAAAACCTTTCGGCGCCAGACCGTTAGCGCGTCACGGCCGCCTTCATCCACCTTGATTGGCGCAGCGCTCTCCAAGGACGTGACACCCAAAAAGATGGAATCTTTATTAGTATGCCAATATGGTTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTACTCACCCGTATGAGTTTTAC</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGGGGTAAAATAATTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACCTTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACCKTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26297</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1078466</contig_pos>
        <strand>+</strand>
        <context>TGAAAAMYMK[G/T]TCTTCGAAAW</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACCT</left_flank>
        <right_flank>TCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCACGGGGTACTAAGAGCTCAATTGCTGAGCTCAATCGCGTTCTTTTCTCCCAAATTCAAATTTATGTTCCTCTCTTCTTCTTCTTTTTTTTTCGTTGCACTTTTCTCCCACTTTCCTTCATTTAACAACCCTTATCACACACTGTGTCGGCGTTGACTTTCGAAGGTTTTCTCATCAATTAACTCGAACTTTATAGCTTCGGAGGAAAAATGGGGCAGCCCCCATAGGCACACAAAGCTGTGGACGCGCATGCTCTCGTTTGAATATCGTTCTTCAGTTGTGAGCAGCCATCTTTTTCGATTTCCATTTGATCCAAAAAGTTTCAAACTTTCAAATTTTACCGCATTTTTTTCTGTCGGTGTCCCACTGACCGTTTTCATGCCTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACCTTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTTCGTAACCTCTTACCTCCAATAAACCAGTTTTAATTACAGGCCTATCCAGTTGGATCTTCAATTTTCAAATCGCGGAGAGTCCCTCAAATCTTCACAGGTCAATTTATAACTACCTTTTCCAAAGTATCCCCCGCCCTCTTATCGTCATAGTTCATCTCAATTTTAAACCCCCGAAAGGGTGGTGCCTAGTACCGTGTCTTCGCATCCTTCGTTCCAACCAAGAGCAATATGATCGGTTCAAAACCTTTCGGCGCCAGACCGTTAGCGCGTCACGGCCGCCTTCATCCACCTTGATTGGCGCAGCGCTCTCCAAGGACGTGACACCCAAAAAGATGGAATCTTTATTAGTATGCCAATATGGTTAGAC</canonical>
            <polymorphic>TTTCACGGGGTACTAAGAGCTCAATTGCTGAGCTCAATCGCGTTCTTTTCTCCCAAATTCAAATTTATGTTCCTCTCTTCTTCTTCTTTTTTTTTCGTTGCACTTTTCTCCCACTTTCCTTCATTTAACAACCCTTATCACACACTGTGTCGGCGTTGACTTTCGAAGGTTTTCTCATCAATTAACTCGAACTTTATAGCTTCGGAGGAAAAATGGGGCAGCCCCCATAGGCACACAAAGCTGTGGACGCGCATGCTCTCGTTTGAATATCGTTCTTCAGTTGTGAGCAGCCATCTTTTTCGATTTCCATTTGATCCAAAAAGTTTCAAACTTTCAAATTTTACCGCATTTTTTTCTGTCGGTGTCCCACTGACCGTTTTCATGCCTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACCTKTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTTCGTAACCTCTTACCTCCAATAAACCAGTTTTAATTACAGGCCTATCCAGTTGGATCTTCAATTTTCAAATCGCGGAGAGTCCCTCAAATCTTCACAGGTCAATTTATAACTACCTTTTCCAAAGTATCCCCCGCCCTCTTATCGTCATAGTTCATCTCAATTTTAAACCCCCGAAAGGGTGGTGCCTAGTACCGTGTCTTCGCATCCTTCGTTCCAACCAAGAGCAATATGATCGGTTCAAAACCTTTCGGCGCCAGACCGTTAGCGCGTCACGGCCGCCTTCATCCACCTTGATTGGCGCAGCGCTCTCCAAGGACGTGACACCCAAAAAGATGGAATCTTTATTAGTATGCCAATATGGTTAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTACTCACCCGTATGAGTTTTAC</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGGGGTAAAATAATTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACCTTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACCTKTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26298</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1078476</contig_pos>
        <strand>+</strand>
        <context>KTCTTCGAAA[A/T]TTTTGAAMAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACCTTTCTTCGAAA</left_flank>
        <right_flank>TTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTAAGAGCTCAATTGCTGAGCTCAATCGCGTTCTTTTCTCCCAAATTCAAATTTATGTTCCTCTCTTCTTCTTCTTTTTTTTTCGTTGCACTTTTCTCCCACTTTCCTTCATTTAACAACCCTTATCACACACTGTGTCGGCGTTGACTTTCGAAGGTTTTCTCATCAATTAACTCGAACTTTATAGCTTCGGAGGAAAAATGGGGCAGCCCCCATAGGCACACAAAGCTGTGGACGCGCATGCTCTCGTTTGAATATCGTTCTTCAGTTGTGAGCAGCCATCTTTTTCGATTTCCATTTGATCCAAAAAGTTTCAAACTTTCAAATTTTACCGCATTTTTTTCTGTCGGTGTCCCACTGACCGTTTTCATGCCTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACCTTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTTCGTAACCTCTTACCTCCAATAAACCAGTTTTAATTACAGGCCTATCCAGTTGGATCTTCAATTTTCAAATCGCGGAGAGTCCCTCAAATCTTCACAGGTCAATTTATAACTACCTTTTCCAAAGTATCCCCCGCCCTCTTATCGTCATAGTTCATCTCAATTTTAAACCCCCGAAAGGGTGGTGCCTAGTACCGTGTCTTCGCATCCTTCGTTCCAACCAAGAGCAATATGATCGGTTCAAAACCTTTCGGCGCCAGACCGTTAGCGCGTCACGGCCGCCTTCATCCACCTTGATTGGCGCAGCGCTCTCCAAGGACGTGACACCCAAAAAGATGGAATCTTTATTAGTATGCCAATATGGTTAGACACACACAACT</canonical>
            <polymorphic>TACTAAGAGCTCAATTGCTGAGCTCAATCGCGTTCTTTTCTCCCAAATTCAAATTTATGTTCCTCTCTTCTTCTTCTTTTTTTTTCGTTGCACTTTTCTCCCACTTTCCTTCATTTAACAACCCTTATCACACACTGTGTCGGCGTTGACTTTCGAAGGTTTTCTCATCAATTAACTCGAACTTTATAGCTTCGGAGGAAAAATGGGGCAGCCCCCATAGGCACACAAAGCTGTGGACGCGCATGCTCTCGTTTGAATATCGTTCTTCAGTTGTGAGCAGCCATCTTTTTCGATTTCCATTTGATCCAAAAAGTTTCAAACTTTCAAATTTTACCGCATTTTTTTCTGTCGGTGTCCCACTGACCGTTTTCATGCCTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACCTTTCTTCGAAAWTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTTCGTAACCTCTTACCTCCAATAAACCAGTTTTAATTACAGGCCTATCCAGTTGGATCTTCAATTTTCAAATCGCGGAGAGTCCCTCAAATCTTCACAGGTCAATTTATAACTACCTTTTCCAAAGTATCCCCCGCCCTCTTATCGTCATAGTTCATCTCAATTTTAAACCCCCGAAAGGGTGGTGCCTAGTACCGTGTCTTCGCATCCTTCGTTCCAACCAAGAGCAATATGATCGGTTCAAAACCTTTCGGCGCCAGACCGTTAGCGCGTCACGGCCGCCTTCATCCACCTTGATTGGCGCAGCGCTCTCCAAGGACGTGACACCCAAAAAGATGGAATCTTTATTAGTATGCCAATATGGTTAGACACACACAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>503 275 112 59 45 6</canonical_bands>
                <polymorphic_bands>562 275 112 45 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>219 157 118 112 58 50 43 41 35 33 28 23 20 16 15 14 12 6</canonical_bands>
                <polymorphic_bands>219 157 118 112 78 58 50 41 33 28 23 20 16 15 14 12 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTACTCACCCGTATGAGTTTTAC</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGGGGTAAAATAATTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACCTTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACCTTTCTTCGAAAWTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26299</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1078484</contig_pos>
        <strand>+</strand>
        <context>AAWTTTTGAA[A/C]ACCTAGGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATTTCTTTTTAAACCTTTTTCTGAAAAACCTTTCTTCGAAATTTTTGAA</left_flank>
        <right_flank>ACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTCAATTGCTGAGCTCAATCGCGTTCTTTTCTCCCAAATTCAAATTTATGTTCCTCTCTTCTTCTTCTTTTTTTTTCGTTGCACTTTTCTCCCACTTTCCTTCATTTAACAACCCTTATCACACACTGTGTCGGCGTTGACTTTCGAAGGTTTTCTCATCAATTAACTCGAACTTTATAGCTTCGGAGGAAAAATGGGGCAGCCCCCATAGGCACACAAAGCTGTGGACGCGCATGCTCTCGTTTGAATATCGTTCTTCAGTTGTGAGCAGCCATCTTTTTCGATTTCCATTTGATCCAAAAAGTTTCAAACTTTCAAATTTTACCGCATTTTTTTCTGTCGGTGTCCCACTGACCGTTTTCATGCCTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACCTTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTTCGTAACCTCTTACCTCCAATAAACCAGTTTTAATTACAGGCCTATCCAGTTGGATCTTCAATTTTCAAATCGCGGAGAGTCCCTCAAATCTTCACAGGTCAATTTATAACTACCTTTTCCAAAGTATCCCCCGCCCTCTTATCGTCATAGTTCATCTCAATTTTAAACCCCCGAAAGGGTGGTGCCTAGTACCGTGTCTTCGCATCCTTCGTTCCAACCAAGAGCAATATGATCGGTTCAAAACCTTTCGGCGCCAGACCGTTAGCGCGTCACGGCCGCCTTCATCCACCTTGATTGGCGCAGCGCTCTCCAAGGACGTGACACCCAAAAAGATGGAATCTTTATTAGTATGCCAATATGGTTAGACACACACAACTAGTTCGAA</canonical>
            <polymorphic>GCTCAATTGCTGAGCTCAATCGCGTTCTTTTCTCCCAAATTCAAATTTATGTTCCTCTCTTCTTCTTCTTTTTTTTTCGTTGCACTTTTCTCCCACTTTCCTTCATTTAACAACCCTTATCACACACTGTGTCGGCGTTGACTTTCGAAGGTTTTCTCATCAATTAACTCGAACTTTATAGCTTCGGAGGAAAAATGGGGCAGCCCCCATAGGCACACAAAGCTGTGGACGCGCATGCTCTCGTTTGAATATCGTTCTTCAGTTGTGAGCAGCCATCTTTTTCGATTTCCATTTGATCCAAAAAGTTTCAAACTTTCAAATTTTACCGCATTTTTTTCTGTCGGTGTCCCACTGACCGTTTTCATGCCTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACCTTTCTTCGAAATTTTTGAAMACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTTCGTAACCTCTTACCTCCAATAAACCAGTTTTAATTACAGGCCTATCCAGTTGGATCTTCAATTTTCAAATCGCGGAGAGTCCCTCAAATCTTCACAGGTCAATTTATAACTACCTTTTCCAAAGTATCCCCCGCCCTCTTATCGTCATAGTTCATCTCAATTTTAAACCCCCGAAAGGGTGGTGCCTAGTACCGTGTCTTCGCATCCTTCGTTCCAACCAAGAGCAATATGATCGGTTCAAAACCTTTCGGCGCCAGACCGTTAGCGCGTCACGGCCGCCTTCATCCACCTTGATTGGCGCAGCGCTCTCCAAGGACGTGACACCCAAAAAGATGGAATCTTTATTAGTATGCCAATATGGTTAGACACACACAACTAGTTCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>208 87 85 84 84 79 76 45 40 32 32 27 23 16 13 12 11 10 10 5 5 3 3 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>293 87 84 84 79 76 45 40 32 32 27 23 16 13 12 11 10 10 5 5 3 3 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTACTCACCCGTATGAGTTTTAC</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGGGGTAAAATAATTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACCTTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACCTTTCTTCGAAATTTTTGAAMACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26300</snp_id>
        <super_contig>c002100833.Contig1</super_contig>
        <contig_pos>1078548</contig_pos>
        <strand>+</strand>
        <context>CTTTCAAATT[G/T]TCCAATCATA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATT</left_flank>
        <right_flank>TCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCTTTTTTTTTCGTTGCACTTTTCTCCCACTTTCCTTCATTTAACAACCCTTATCACACACTGTGTCGGCGTTGACTTTCGAAGGTTTTCTCATCAATTAACTCGAACTTTATAGCTTCGGAGGAAAAATGGGGCAGCCCCCATAGGCACACAAAGCTGTGGACGCGCATGCTCTCGTTTGAATATCGTTCTTCAGTTGTGAGCAGCCATCTTTTTCGATTTCCATTTGATCCAAAAAGTTTCAAACTTTCAAATTTTACCGCATTTTTTTCTGTCGGTGTCCCACTGACCGTTTTCATGCCTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACCTTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTTCGTAACCTCTTACCTCCAATAAACCAGTTTTAATTACAGGCCTATCCAGTTGGATCTTCAATTTTCAAATCGCGGAGAGTCCCTCAAATCTTCACAGGTCAATTTATAACTACCTTTTCCAAAGTATCCCCCGCCCTCTTATCGTCATAGTTCATCTCAATTTTAAACCCCCGAAAGGGTGGTGCCTAGTACCGTGTCTTCGCATCCTTCGTTCCAACCAAGAGCAATATGATCGGTTCAAAACCTTTCGGCGCCAGACCGTTAGCGCGTCACGGCCGCCTTCATCCACCTTGATTGGCGCAGCGCTCTCCAAGGACGTGACACCCAAAAAGATGGAATCTTTATTAGTATGCCAATATGGTTAGACACACACAACTAGTTCGAAATTTTTGCAAAAGAGGTAGTCTTTTGAAGGAACGAACCCAGCGGGGTTCCAAGTGCACTTTTAG</canonical>
            <polymorphic>CTTCTTTTTTTTTCGTTGCACTTTTCTCCCACTTTCCTTCATTTAACAACCCTTATCACACACTGTGTCGGCGTTGACTTTCGAAGGTTTTCTCATCAATTAACTCGAACTTTATAGCTTCGGAGGAAAAATGGGGCAGCCCCCATAGGCACACAAAGCTGTGGACGCGCATGCTCTCGTTTGAATATCGTTCTTCAGTTGTGAGCAGCCATCTTTTTCGATTTCCATTTGATCCAAAAAGTTTCAAACTTTCAAATTTTACCGCATTTTTTTCTGTCGGTGTCCCACTGACCGTTTTCATGCCTACTCACCCGTATGAGTTTTACCTTTTGCCGCCCCGTGCTTGGTCGTGTTCAAAAATGTTTGAATTTTCGGAAAGAGGAATTATTTCTTTTTAAACCTTTTTCTGAAAAACCTTTCTTCGAAATTTTTGAACACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTKTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTTCGTAACCTCTTACCTCCAATAAACCAGTTTTAATTACAGGCCTATCCAGTTGGATCTTCAATTTTCAAATCGCGGAGAGTCCCTCAAATCTTCACAGGTCAATTTATAACTACCTTTTCCAAAGTATCCCCCGCCCTCTTATCGTCATAGTTCATCTCAATTTTAAACCCCCGAAAGGGTGGTGCCTAGTACCGTGTCTTCGCATCCTTCGTTCCAACCAAGAGCAATATGATCGGTTCAAAACCTTTCGGCGCCAGACCGTTAGCGCGTCACGGCCGCCTTCATCCACCTTGATTGGCGCAGCGCTCTCCAAGGACGTGACACCCAAAAAGATGGAATCTTTATTAGTATGCCAATATGGTTAGACACACACAACTAGTTCGAAATTTTTGCAAAAGAGGTAGTCTTTTGAAGGAACGAACCCAGCGGGGTTCCAAGTGCACTTTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTAGGTTTCCTTCTGTCTCT</pcr_primer_p1>
		<pcr_primer_p2>GGGATACTTTGGAAAAGGTAGT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTGTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTTCGTAACCTCTTACCTCCAATAAACCAGTTTTAATTACAGGCCTATCCAGTTGGATCTTCAATTTTCAAATCGCGGAGAGTCCCTCAAATCTTCACAGGTCAATTTATAACTACCTTTTCCAAAGTATCCC</canonical_amplicon>
		<polymorphic_amplicon>ACCTAGGTTTCCTTCTGTCTCTGCAATTATCTTCCTCGTAATTTTTCAAACAACTTTCAAATTKTCCAATCATAATTTCTACTATACCGTTCCTTCAATTATTTTACCCCTTTTTCGTAACCTCTTACCTCCAATAAACCAGTTTTAATTACAGGCCTATCCAGTTGGATCTTCAATTTTCAAATCGCGGAGAGTCCCTCAAATCTTCACAGGTCAATTTATAACTACCTTTTCCAAAGTATCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26301</snp_id>
        <super_contig>c002201307.Contig1</super_contig>
        <contig_pos>5501</contig_pos>
        <strand></strand>
        <context>TCACCCAAGA[C/T]CTCGAGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACGGAGAGGATAGCTCGCAAATGGTCGCAATGTTCGACGTCACCCAAGA</left_flank>
        <right_flank>CTCGAGAAAAAATACGAAATCCTAGAAGTGAGTAAAAAAGTTTCAGAACA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAAAGGATGCGGCAAAGACAAGGCTTGCCTGGAAACTTTGAAAGCGTACCGCACACGCGAAGTTTTGGTTAGTTATTTCAATGGTAGATCTCAAAGCTAGATTTCATAGTCAAACGAACCTAACTTAGGCACCACCACACTCAAAACTTCACTAGAAAATGACGGTTAGTTAGGGTTTTAAGACAAACATCCTGAGATTCCTTTTTTGTCTCATGTCTGATTCGTTTTAACAGCGATGAACGCAAAAAACTGGTTCAAATGTGAGTGTTTTGTAGGAACGCATAATCGAACAGCTTCCTGGAGCCCCAATTTCTGACGCCGCCGTCCAAATCGACCCCGAGCTCCGTAAGATGTACGTCGATTTCTACGAAGACGAACGTCACAAAAATTCGGACTTCAACCGCCAAGACGTAGACACCTACTTCTACTCAGCAAAGGATCCGTTTGACGGAGAGGATAGCTCGCAAATGGTCGCAATGTTCGACGTCACCCAAGACCTCGAGAAAAAATACGAAATCCTAGAAGTGAGTAAAAAAGTTTCAGAACAATGTGAATTTGAGTCTCTACGTTTCCAGGCCAAACTCATGGTGTCAACAACATTGCCGACTTACTCGAGGAACATTCTGGACGATGTCAGAGTCCAAGTGTTTGAGAAAAATAGAGATAACTCGCTCGGTGAACTCGTGAAGACGCAATCTTTCCGCATAACAGGAGGTGAACGAATCACGATTGATCTGCCAGTTGGAGCAGCCAAAAGGTTAGTTTCGACCATGTTGAATTTATGAATGTTTGCAAGAACTAATAAGCAAAAAGCCTTTCTTACAAGTTTCTAGAGAACTAAAACTAAAACTCTCAGGTGGTTTGAGTCATCAGGATCCTTCCACGGAATCTTCGTGTCTGCCATGCTCGAACAGCACAACATTGCTGTACATCCACAGCAGGAGACCAAAGACAGCGAGAAAATGATCCTCCAACTCTCCCTTCGGAACAAGGAGTT</canonical>
            <polymorphic>CAAAAAAGGATGCGGCAAAGACAAGGCTTGCCTGGAAACTTTGAAAGCGTACCGCACACGCGAAGTTTTGGTTAGTTATTTCAATGGTAGATCTCAAAGCTAGATTTCATAGTCAAACGAACCTAACTTAGGCACCACCACACTCAAAACTTCACTAGAAAATGACGGTTAGTTAGGGTTTTAAGACAAACATCCTGAGATTCCTTTTTTGTCTCATGTCTGATTCGTTTTAACAGCGATGAACGCAAAAAACTGGTTCAAATGTGAGTGTTTTGTAGGAACGCATAATCGAACAGCTTCCTGGAGCCCCAATTTCTGACGCCGCCGTCCAAATCGACCCCGAGCTCCGTAAGATGTACGTCGATTTCTACGAAGACGAACGTCACAAAAATTCGGACTTCAACCGCCAAGACGTAGACACCTACTTCTACTCAGCAAAGGATCCGTTTGACGGAGAGGATAGCTCGCAAATGGTCGCAATGTTCGACGTCACCCAAGAYCTCGAGAAAAAATACGAAATCCTAGAAGTGAGTAAAAAAGTTTCAGAACAATGTGAATTTGAGTCTCTACGTTTCCAGGCCAAACTCATGGTGTCAACAACATTGCCGACTTACTCGAGGAACATTCTGGACGATGTCAGAGTCCAAGTGTTTGAGAAAAATAGAGATAACTCGCTCGGTGAACTCGTGAAGACGCAATCTTTCCGCATAACAGGAGGTGAACGAATCACGATTGATCTGCCAGTTGGAGCAGCCAAAAGGTTAGTTTCGACCATGTTGAATTTATGAATGTTTGCAAGAACTAATAAGCAAAAAGCCTTTCTTACAAGTTTCTAGAGAACTAAAACTAAAACTCTCAGGTGGTTTGAGTCATCAGGATCCTTCCACGGAATCTTCGTGTCTGCCATGCTCGAACAGCACAACATTGCTGTACATCCACAGCAGGAGACCAAAGACAGCGAGAAAATGATCCTCCAACTCTCCCTTCGGAACAAGGAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTACTTCTACTCAGCAAAGGAT</pcr_primer_p1>
		<pcr_primer_p2>CTATTTTTCTCAAACACTTGGAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CCTACTTCTACTCAGCAAAGGATCCGTTTGACGGAGAGGATAGCTCGCAAATGGTCGCAATGTTCGACGTCACCCAAGACCTCGAGAAAAAATACGAAATCCTAGAAGTGAGTAAAAAAGTTTCAGAACAATGTGAATTTGAGTCTCTACGTTTCCAGGCCAAACTCATGGTGTCAACAACATTGCCGACTTACTCGAGGAACATTCTGGACGATGTCAGAGTCCAAGTGTTTGAGAAAAATAG</canonical_amplicon>
		<polymorphic_amplicon>CCTACTTCTACTCAGCAAAGGATCCGTTTGACGGAGAGGATAGCTCGCAAATGGTCGCAATGTTCGACGTCACCCAAGAYCTCGAGAAAAAATACGAAATCCTAGAAGTGAGTAAAAAAGTTTCAGAACAATGTGAATTTGAGTCTCTACGTTTCCAGGCCAAACTCATGGTGTCAACAACATTGCCGACTTACTCGAGGAACATTCTGGACGATGTCAGAGTCCAAGTGTTTGAGAAAAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26302</snp_id>
        <super_contig>c002201307.Contig1</super_contig>
        <contig_pos>5869</contig_pos>
        <strand></strand>
        <context>AGGTGGTTTG[A/C]GTCATCAGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTTCTTACAAGTTTCTAGAGAACTAAAACTAAAACTCTCAGGTGGTTTG</left_flank>
        <right_flank>GTCATCAGGATCCTTCCACGGAATCTTCGTGTCTGCCATGCTCGAACAGC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACGAAGACGAACGTCACAAAAATTCGGACTTCAACCGCCAAGACGTAGACACCTACTTCTACTCAGCAAAGGATCCGTTTGACGGAGAGGATAGCTCGCAAATGGTCGCAATGTTCGACGTCACCCAAGACCTCGAGAAAAAATACGAAATCCTAGAAGTGAGTAAAAAAGTTTCAGAACAATGTGAATTTGAGTCTCTACGTTTCCAGGCCAAACTCATGGTGTCAACAACATTGCCGACTTACTCGAGGAACATTCTGGACGATGTCAGAGTCCAAGTGTTTGAGAAAAATAGAGATAACTCGCTCGGTGAACTCGTGAAGACGCAATCTTTCCGCATAACAGGAGGTGAACGAATCACGATTGATCTGCCAGTTGGAGCAGCCAAAAGGTTAGTTTCGACCATGTTGAATTTATGAATGTTTGCAAGAACTAATAAGCAAAAAGCCTTTCTTACAAGTTTCTAGAGAACTAAAACTAAAACTCTCAGGTGGTTTGAGTCATCAGGATCCTTCCACGGAATCTTCGTGTCTGCCATGCTCGAACAGCACAACATTGCTGTACATCCACAGCAGGAGACCAAAGACAGCGAGAAAATGATCCTCCAACTCTCCCTTCGGAACAAGGAGTTTGTCGGTCAATCCACCAACTCAACCCTCCGCCGCTCTCGTCGTTCGCCATCGGCTGCAATCTGCGCCACTTCCCAGCCCTCTGAAGGATGCTGTCTCTACGACCTGATCGTCGAGTTCAATAAGATCGGATGGGACTGGGTGATCGCCCCACCACGTTACAACGCTTTTATGTGCAGAGGACAGTGCGAGAAAAACGCACATCATGTGAGTTTATCAGAAACACTGCTAGCTTTGTAATCAAAAATTTTCAGCTTCTCAACGACTTCGGCCATGCACGGATCATGCGAGCTGCAAACAGCATCTACTCGGTCGCCAACATGGATCTGACCAGCCTCGGCCTTTGCTGCCACGCCTCTGAGTTCGACTA</canonical>
            <polymorphic>TACGAAGACGAACGTCACAAAAATTCGGACTTCAACCGCCAAGACGTAGACACCTACTTCTACTCAGCAAAGGATCCGTTTGACGGAGAGGATAGCTCGCAAATGGTCGCAATGTTCGACGTCACCCAAGACCTCGAGAAAAAATACGAAATCCTAGAAGTGAGTAAAAAAGTTTCAGAACAATGTGAATTTGAGTCTCTACGTTTCCAGGCCAAACTCATGGTGTCAACAACATTGCCGACTTACTCGAGGAACATTCTGGACGATGTCAGAGTCCAAGTGTTTGAGAAAAATAGAGATAACTCGCTCGGTGAACTCGTGAAGACGCAATCTTTCCGCATAACAGGAGGTGAACGAATCACGATTGATCTGCCAGTTGGAGCAGCCAAAAGGTTAGTTTCGACCATGTTGAATTTATGAATGTTTGCAAGAACTAATAAGCAAAAAGCCTTTCTTACAAGTTTCTAGAGAACTAAAACTAAAACTCTCAGGTGGTTTGMGTCATCAGGATCCTTCCACGGAATCTTCGTGTCTGCCATGCTCGAACAGCACAACATTGCTGTACATCCACAGCAGGAGACCAAAGACAGCGAGAAAATGATCCTCCAACTCTCCCTTCGGAACAAGGAGTTTGTCGGTCAATCCACCAACTCAACCCTCCGCCGCTCTCGTCGTTCGCCATCGGCTGCAATCTGCGCCACTTCCCAGCCCTCTGAAGGATGCTGTCTCTACGACCTGATCGTCGAGTTCAATAAGATCGGATGGGACTGGGTGATCGCCCCACCACGTTACAACGCTTTTATGTGCAGAGGACAGTGCGAGAAAAACGCACATCATGTGAGTTTATCAGAAACACTGCTAGCTTTGTAATCAAAAATTTTCAGCTTCTCAACGACTTCGGCCATGCACGGATCATGCGAGCTGCAAACAGCATCTACTCGGTCGCCAACATGGATCTGACCAGCCTCGGCCTTTGCTGCCACGCCTCTGAGTTCGACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>479 193 143 84 79 22</canonical_bands>
                <polymorphic_bands>479 193 165 84 79</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAACAGGAGGTGAACGAATC</pcr_primer_p1>
		<pcr_primer_p2>CTGTGGATGTACAGCAATGTT</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>ATAACAGGAGGTGAACGAATCACGATTGATCTGCCAGTTGGAGCAGCCAAAAGGTTAGTTTCGACCATGTTGAATTTATGAATGTTTGCAAGAACTAATAAGCAAAAAGCCTTTCTTACAAGTTTCTAGAGAACTAAAACTAAAACTCTCAGGTGGTTTGAGTCATCAGGATCCTTCCACGGAATCTTCGTGTCTGCCATGCTCGAACAGCACAACATTGCTGTACATCCACAG</canonical_amplicon>
		<polymorphic_amplicon>ATAACAGGAGGTGAACGAATCACGATTGATCTGCCAGTTGGAGCAGCCAAAAGGTTAGTTTCGACCATGTTGAATTTATGAATGTTTGCAAGAACTAATAAGCAAAAAGCCTTTCTTACAAGTTTCTAGAGAACTAAAACTAAAACTCTCAGGTGGTTTGMGTCATCAGGATCCTTCCACGGAATCTTCGTGTCTGCCATGCTCGAACAGCACAACATTGCTGTACATCCACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26303</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>32672</contig_pos>
        <strand></strand>
        <context>tttaaagttg[A/G]cagagagacg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTG</left_flank>
        <right_flank>CAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCGAATTTCTAGAATTATGCAATTAATTTTTGAATTCCATTCTAATCAATTTGTGTCAATTTTTATAGATAGAAGAGGAAGAAGATAAACCGATTCTAATTCCCGACTCGTCGCTGTTGAAGCCCGTCGGACGGGTAAGCCCATTTCTATTTTGTCTTACTGTAGCTCTTCTTTGCGCATGTACTGTACCTCGGTGTAGATCAAAAAAACCACGTGTATTGTCCCTAGTCATAGTCCAACTTTCCCCCCCTCCCCCCCCCCCCCCATTCTTCTTCACTTCTATCCAGGGCTCAAATTTGGAATTTCTTTTTGAATCAAAAAAGTGAAATACAGAAATTGAAAATGTTCTCTTTTGAGCTACATAGATGCCAAGAAAGCTAAGCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCCCAGCCCGACTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGGTTTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACGAGAGGACTCTCGTTGTCTGCGCCTCTCCATCATTTTTAAAGAAGCATAATTAGCTCAAAAATTGACCAAAAGAATGAAAATTACACAGTTTTGAAGGAAGTTTTTAGCTGCAATAACTACGCAGTTCGATTTCGCTGGCTTTGCCTTCTTGAC</canonical>
            <polymorphic>ATTCGAATTTCTAGAATTATGCAATTAATTTTTGAATTCCATTCTAATCAATTTGTGTCAATTTTTATAGATAGAAGAGGAAGAAGATAAACCGATTCTAATTCCCGACTCGTCGCTGTTGAAGCCCGTCGGACGGGTAAGCCCATTTCTATTTTGTCTTACTGTAGCTCTTCTTTGCGCATGTACTGTACCTCGGTGTAGATCAAAAAAACCACGTGTATTGTCCCTAGTCATAGTCCAACTTTCCCCCCCTCCCCCCCCCCCCCCATTCTTCTTCACTTCTATCCAGGGCTCAAATTTGGAATTTCTTTTTGAATCAAAAAAGTGAAATACAGAAATTGAAAATGTTCTCTTTTGAGCTACATAGATGCCAAGAAAGCTAAGCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGRCAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCCCAGCCCGACTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGGTTTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACGAGAGGACTCTCGTTGTCTGCGCCTCTCCATCATTTTTAAAGAAGCATAATTAGCTCAAAAATTGACCAAAAGAATGAAAATTACACAGTTTTGAAGGAAGTTTTTAGCTGCAATAACTACGCAGTTCGATTTCGCTGGCTTTGCCTTCTTGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTAGTAAAGTGAAATTTTGTAAGG</pcr_primer_p1>
		<pcr_primer_p2>AATTGATTCGAGAATGTTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>GCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATT</canonical_amplicon>
		<polymorphic_amplicon>GCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGRCAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26304</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>32744</contig_pos>
        <strand>+</strand>
        <context>cgctgtatct[A/C]ggctycaggc</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCT</left_flank>
        <right_flank>GGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAGAGGAAGAAGATAAACCGATTCTAATTCCCGACTCGTCGCTGTTGAAGCCCGTCGGACGGGTAAGCCCATTTCTATTTTGTCTTACTGTAGCTCTTCTTTGCGCATGTACTGTACCTCGGTGTAGATCAAAAAAACCACGTGTATTGTCCCTAGTCATAGTCCAACTTTCCCCCCCTCCCCCCCCCCCCCCATTCTTCTTCACTTCTATCCAGGGCTCAAATTTGGAATTTCTTTTTGAATCAAAAAAGTGAAATACAGAAATTGAAAATGTTCTCTTTTGAGCTACATAGATGCCAAGAAAGCTAAGCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCCCAGCCCGACTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGGTTTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACGAGAGGACTCTCGTTGTCTGCGCCTCTCCATCATTTTTAAAGAAGCATAATTAGCTCAAAAATTGACCAAAAGAATGAAAATTACACAGTTTTGAAGGAAGTTTTTAGCTGCAATAACTACGCAGTTCGATTTCGCTGGCTTTGCCTTCTTGACTTTTGGTTCAAAACTTTTCAGCTCTTTTATATCAGCGCGTTTGACTTGGTTTGTAGTCTGGAGCTCATAATT</canonical>
            <polymorphic>AGAAGAGGAAGAAGATAAACCGATTCTAATTCCCGACTCGTCGCTGTTGAAGCCCGTCGGACGGGTAAGCCCATTTCTATTTTGTCTTACTGTAGCTCTTCTTTGCGCATGTACTGTACCTCGGTGTAGATCAAAAAAACCACGTGTATTGTCCCTAGTCATAGTCCAACTTTCCCCCCCTCCCCCCCCCCCCCCATTCTTCTTCACTTCTATCCAGGGCTCAAATTTGGAATTTCTTTTTGAATCAAAAAAGTGAAATACAGAAATTGAAAATGTTCTCTTTTGAGCTACATAGATGCCAAGAAAGCTAAGCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTMGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCCCAGCCCGACTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGGTTTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACGAGAGGACTCTCGTTGTCTGCGCCTCTCCATCATTTTTAAAGAAGCATAATTAGCTCAAAAATTGACCAAAAGAATGAAAATTACACAGTTTTGAAGGAAGTTTTTAGCTGCAATAACTACGCAGTTCGATTTCGCTGGCTTTGCCTTCTTGACTTTTGGTTCAAAACTTTTCAGCTCTTTTATATCAGCGCGTTTGACTTGGTTTGTAGTCTGGAGCTCATAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAGTAAAGTGAAATTTTGTAAGG</pcr_primer_p1>
		<pcr_primer_p2>AATTGATTCGAGAATGTTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>GCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATT</canonical_amplicon>
		<polymorphic_amplicon>GCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTMGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26305</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>32749</contig_pos>
        <strand></strand>
        <context>tatctmggct[C/T]caggctgGCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCT</left_flank>
        <right_flank>CAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAAGAAGATAAACCGATTCTAATTCCCGACTCGTCGCTGTTGAAGCCCGTCGGACGGGTAAGCCCATTTCTATTTTGTCTTACTGTAGCTCTTCTTTGCGCATGTACTGTACCTCGGTGTAGATCAAAAAAACCACGTGTATTGTCCCTAGTCATAGTCCAACTTTCCCCCCCTCCCCCCCCCCCCCCATTCTTCTTCACTTCTATCCAGGGCTCAAATTTGGAATTTCTTTTTGAATCAAAAAAGTGAAATACAGAAATTGAAAATGTTCTCTTTTGAGCTACATAGATGCCAAGAAAGCTAAGCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCCCAGCCCGACTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGGTTTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACGAGAGGACTCTCGTTGTCTGCGCCTCTCCATCATTTTTAAAGAAGCATAATTAGCTCAAAAATTGACCAAAAGAATGAAAATTACACAGTTTTGAAGGAAGTTTTTAGCTGCAATAACTACGCAGTTCGATTTCGCTGGCTTTGCCTTCTTGACTTTTGGTTCAAAACTTTTCAGCTCTTTTATATCAGCGCGTTTGACTTGGTTTGTAGTCTGGAGCTCATAATTCGCAA</canonical>
            <polymorphic>AGGAAGAAGATAAACCGATTCTAATTCCCGACTCGTCGCTGTTGAAGCCCGTCGGACGGGTAAGCCCATTTCTATTTTGTCTTACTGTAGCTCTTCTTTGCGCATGTACTGTACCTCGGTGTAGATCAAAAAAACCACGTGTATTGTCCCTAGTCATAGTCCAACTTTCCCCCCCTCCCCCCCCCCCCCCATTCTTCTTCACTTCTATCCAGGGCTCAAATTTGGAATTTCTTTTTGAATCAAAAAAGTGAAATACAGAAATTGAAAATGTTCTCTTTTGAGCTACATAGATGCCAAGAAAGCTAAGCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTYCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCCCAGCCCGACTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGGTTTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACGAGAGGACTCTCGTTGTCTGCGCCTCTCCATCATTTTTAAAGAAGCATAATTAGCTCAAAAATTGACCAAAAGAATGAAAATTACACAGTTTTGAAGGAAGTTTTTAGCTGCAATAACTACGCAGTTCGATTTCGCTGGCTTTGCCTTCTTGACTTTTGGTTCAAAACTTTTCAGCTCTTTTATATCAGCGCGTTTGACTTGGTTTGTAGTCTGGAGCTCATAATTCGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>499 291 210</canonical_bands>
                <polymorphic_bands>790 210</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>499 291 210</canonical_bands>
                <polymorphic_bands>790 210</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTAGTAAAGTGAAATTTTGTAAGG</pcr_primer_p1>
		<pcr_primer_p2>AATTGATTCGAGAATGTTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>GCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATT</canonical_amplicon>
		<polymorphic_amplicon>GCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTYCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26306</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>32771</contig_pos>
        <strand>+</strand>
        <context>TCTATTTCAA[A/G]TATTATTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAA</left_flank>
        <right_flank>TATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAAT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCCCGACTCGTCGCTGTTGAAGCCCGTCGGACGGGTAAGCCCATTTCTATTTTGTCTTACTGTAGCTCTTCTTTGCGCATGTACTGTACCTCGGTGTAGATCAAAAAAACCACGTGTATTGTCCCTAGTCATAGTCCAACTTTCCCCCCCTCCCCCCCCCCCCCCATTCTTCTTCACTTCTATCCAGGGCTCAAATTTGGAATTTCTTTTTGAATCAAAAAAGTGAAATACAGAAATTGAAAATGTTCTCTTTTGAGCTACATAGATGCCAAGAAAGCTAAGCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCCCAGCCCGACTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGGTTTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACGAGAGGACTCTCGTTGTCTGCGCCTCTCCATCATTTTTAAAGAAGCATAATTAGCTCAAAAATTGACCAAAAGAATGAAAATTACACAGTTTTGAAGGAAGTTTTTAGCTGCAATAACTACGCAGTTCGATTTCGCTGGCTTTGCCTTCTTGACTTTTGGTTCAAAACTTTTCAGCTCTTTTATATCAGCGCGTTTGACTTGGTTTGTAGTCTGGAGCTCATAATTCGCAAATGAGTTCTTCTTGTGGATCTT</canonical>
            <polymorphic>AATTCCCGACTCGTCGCTGTTGAAGCCCGTCGGACGGGTAAGCCCATTTCTATTTTGTCTTACTGTAGCTCTTCTTTGCGCATGTACTGTACCTCGGTGTAGATCAAAAAAACCACGTGTATTGTCCCTAGTCATAGTCCAACTTTCCCCCCCTCCCCCCCCCCCCCCATTCTTCTTCACTTCTATCCAGGGCTCAAATTTGGAATTTCTTTTTGAATCAAAAAAGTGAAATACAGAAATTGAAAATGTTCTCTTTTGAGCTACATAGATGCCAAGAAAGCTAAGCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAARTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCCCAGCCCGACTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGGTTTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACGAGAGGACTCTCGTTGTCTGCGCCTCTCCATCATTTTTAAAGAAGCATAATTAGCTCAAAAATTGACCAAAAGAATGAAAATTACACAGTTTTGAAGGAAGTTTTTAGCTGCAATAACTACGCAGTTCGATTTCGCTGGCTTTGCCTTCTTGACTTTTGGTTCAAAACTTTTCAGCTCTTTTATATCAGCGCGTTTGACTTGGTTTGTAGTCTGGAGCTCATAATTCGCAAATGAGTTCTTCTTGTGGATCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAGTAAAGTGAAATTTTGTAAGG</pcr_primer_p1>
		<pcr_primer_p2>AATTGATTCGAGAATGTTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>GCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATT</canonical_amplicon>
		<polymorphic_amplicon>GCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAARTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26307</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>32790</contig_pos>
        <strand>+</strand>
        <context>AAGGAAATTC[A/C]AAAAMTATTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTC</left_flank>
        <right_flank>AAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAGCCCGTCGGACGGGTAAGCCCATTTCTATTTTGTCTTACTGTAGCTCTTCTTTGCGCATGTACTGTACCTCGGTGTAGATCAAAAAAACCACGTGTATTGTCCCTAGTCATAGTCCAACTTTCCCCCCCTCCCCCCCCCCCCCCATTCTTCTTCACTTCTATCCAGGGCTCAAATTTGGAATTTCTTTTTGAATCAAAAAAGTGAAATACAGAAATTGAAAATGTTCTCTTTTGAGCTACATAGATGCCAAGAAAGCTAAGCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCCCAGCCCGACTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGGTTTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACGAGAGGACTCTCGTTGTCTGCGCCTCTCCATCATTTTTAAAGAAGCATAATTAGCTCAAAAATTGACCAAAAGAATGAAAATTACACAGTTTTGAAGGAAGTTTTTAGCTGCAATAACTACGCAGTTCGATTTCGCTGGCTTTGCCTTCTTGACTTTTGGTTCAAAACTTTTCAGCTCTTTTATATCAGCGCGTTTGACTTGGTTTGTAGTCTGGAGCTCATAATTCGCAAATGAGTTCTTCTTGTGGATCTTCTCAACTTCTCAACTCCAC</canonical>
            <polymorphic>TTGAAGCCCGTCGGACGGGTAAGCCCATTTCTATTTTGTCTTACTGTAGCTCTTCTTTGCGCATGTACTGTACCTCGGTGTAGATCAAAAAAACCACGTGTATTGTCCCTAGTCATAGTCCAACTTTCCCCCCCTCCCCCCCCCCCCCCATTCTTCTTCACTTCTATCCAGGGCTCAAATTTGGAATTTCTTTTTGAATCAAAAAAGTGAAATACAGAAATTGAAAATGTTCTCTTTTGAGCTACATAGATGCCAAGAAAGCTAAGCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCMAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCCCAGCCCGACTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGGTTTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACGAGAGGACTCTCGTTGTCTGCGCCTCTCCATCATTTTTAAAGAAGCATAATTAGCTCAAAAATTGACCAAAAGAATGAAAATTACACAGTTTTGAAGGAAGTTTTTAGCTGCAATAACTACGCAGTTCGATTTCGCTGGCTTTGCCTTCTTGACTTTTGGTTCAAAACTTTTCAGCTCTTTTATATCAGCGCGTTTGACTTGGTTTGTAGTCTGGAGCTCATAATTCGCAAATGAGTTCTTCTTGTGGATCTTCTCAACTTCTCAACTCCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAGTAAAGTGAAATTTTGTAAGG</pcr_primer_p1>
		<pcr_primer_p2>AATTGATTCGAGAATGTTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>GCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATT</canonical_amplicon>
		<polymorphic_amplicon>GCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCMAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26308</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>32795</contig_pos>
        <strand></strand>
        <context>AATTCMAAAA[A/C]TATTAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAA</left_flank>
        <right_flank>TATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCCGTCGGACGGGTAAGCCCATTTCTATTTTGTCTTACTGTAGCTCTTCTTTGCGCATGTACTGTACCTCGGTGTAGATCAAAAAAACCACGTGTATTGTCCCTAGTCATAGTCCAACTTTCCCCCCCTCCCCCCCCCCCCCCATTCTTCTTCACTTCTATCCAGGGCTCAAATTTGGAATTTCTTTTTGAATCAAAAAAGTGAAATACAGAAATTGAAAATGTTCTCTTTTGAGCTACATAGATGCCAAGAAAGCTAAGCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCCCAGCCCGACTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGGTTTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACGAGAGGACTCTCGTTGTCTGCGCCTCTCCATCATTTTTAAAGAAGCATAATTAGCTCAAAAATTGACCAAAAGAATGAAAATTACACAGTTTTGAAGGAAGTTTTTAGCTGCAATAACTACGCAGTTCGATTTCGCTGGCTTTGCCTTCTTGACTTTTGGTTCAAAACTTTTCAGCTCTTTTATATCAGCGCGTTTGACTTGGTTTGTAGTCTGGAGCTCATAATTCGCAAATGAGTTCTTCTTGTGGATCTTCTCAACTTCTCAACTCCACTTTTT</canonical>
            <polymorphic>GCCCGTCGGACGGGTAAGCCCATTTCTATTTTGTCTTACTGTAGCTCTTCTTTGCGCATGTACTGTACCTCGGTGTAGATCAAAAAAACCACGTGTATTGTCCCTAGTCATAGTCCAACTTTCCCCCCCTCCCCCCCCCCCCCCATTCTTCTTCACTTCTATCCAGGGCTCAAATTTGGAATTTCTTTTTGAATCAAAAAAGTGAAATACAGAAATTGAAAATGTTCTCTTTTGAGCTACATAGATGCCAAGAAAGCTAAGCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAMTATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCCCAGCCCGACTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGGTTTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACGAGAGGACTCTCGTTGTCTGCGCCTCTCCATCATTTTTAAAGAAGCATAATTAGCTCAAAAATTGACCAAAAGAATGAAAATTACACAGTTTTGAAGGAAGTTTTTAGCTGCAATAACTACGCAGTTCGATTTCGCTGGCTTTGCCTTCTTGACTTTTGGTTCAAAACTTTTCAGCTCTTTTATATCAGCGCGTTTGACTTGGTTTGTAGTCTGGAGCTCATAATTCGCAAATGAGTTCTTCTTGTGGATCTTCTCAACTTCTCAACTCCACTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTAGTAAAGTGAAATTTTGTAAGG</pcr_primer_p1>
		<pcr_primer_p2>AATTGATTCGAGAATGTTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>GCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATT</canonical_amplicon>
		<polymorphic_amplicon>GCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAMTATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26309</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>32810</contig_pos>
        <strand></strand>
        <context>AAAAATCTAC[A/C]GAAAAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTAC</left_flank>
        <right_flank>GAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCCCATTTCTATTTTGTCTTACTGTAGCTCTTCTTTGCGCATGTACTGTACCTCGGTGTAGATCAAAAAAACCACGTGTATTGTCCCTAGTCATAGTCCAACTTTCCCCCCCTCCCCCCCCCCCCCCATTCTTCTTCACTTCTATCCAGGGCTCAAATTTGGAATTTCTTTTTGAATCAAAAAAGTGAAATACAGAAATTGAAAATGTTCTCTTTTGAGCTACATAGATGCCAAGAAAGCTAAGCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCCCAGCCCGACTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGGTTTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACGAGAGGACTCTCGTTGTCTGCGCCTCTCCATCATTTTTAAAGAAGCATAATTAGCTCAAAAATTGACCAAAAGAATGAAAATTACACAGTTTTGAAGGAAGTTTTTAGCTGCAATAACTACGCAGTTCGATTTCGCTGGCTTTGCCTTCTTGACTTTTGGTTCAAAACTTTTCAGCTCTTTTATATCAGCGCGTTTGACTTGGTTTGTAGTCTGGAGCTCATAATTCGCAAATGAGTTCTTCTTGTGGATCTTCTCAACTTCTCAACTCCACTTTTTGATTCGATTGGAAAT</canonical>
            <polymorphic>AAGCCCATTTCTATTTTGTCTTACTGTAGCTCTTCTTTGCGCATGTACTGTACCTCGGTGTAGATCAAAAAAACCACGTGTATTGTCCCTAGTCATAGTCCAACTTTCCCCCCCTCCCCCCCCCCCCCCATTCTTCTTCACTTCTATCCAGGGCTCAAATTTGGAATTTCTTTTTGAATCAAAAAAGTGAAATACAGAAATTGAAAATGTTCTCTTTTGAGCTACATAGATGCCAAGAAAGCTAAGCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACMGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCCCAGCCCGACTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGGTTTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACGAGAGGACTCTCGTTGTCTGCGCCTCTCCATCATTTTTAAAGAAGCATAATTAGCTCAAAAATTGACCAAAAGAATGAAAATTACACAGTTTTGAAGGAAGTTTTTAGCTGCAATAACTACGCAGTTCGATTTCGCTGGCTTTGCCTTCTTGACTTTTGGTTCAAAACTTTTCAGCTCTTTTATATCAGCGCGTTTGACTTGGTTTGTAGTCTGGAGCTCATAATTCGCAAATGAGTTCTTCTTGTGGATCTTCTCAACTTCTCAACTCCACTTTTTGATTCGATTGGAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 472 24</canonical_bands>
                <polymorphic_bands>976 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTAGTAAAGTGAAATTTTGTAAGG</pcr_primer_p1>
		<pcr_primer_p2>AATTGATTCGAGAATGTTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>GCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATT</canonical_amplicon>
		<polymorphic_amplicon>GCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACMGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26310</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>32821</contig_pos>
        <strand></strand>
        <context>GAAAAAAAAA[T/A]GATTTCAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAA</left_flank>
        <right_flank>GATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTTGTCTTACTGTAGCTCTTCTTTGCGCATGTACTGTACCTCGGTGTAGATCAAAAAAACCACGTGTATTGTCCCTAGTCATAGTCCAACTTTCCCCCCCTCCCCCCCCCCCCCCATTCTTCTTCACTTCTATCCAGGGCTCAAATTTGGAATTTCTTTTTGAATCAAAAAAGTGAAATACAGAAATTGAAAATGTTCTCTTTTGAGCTACATAGATGCCAAGAAAGCTAAGCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCCCAGCCCGACTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGGTTTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACGAGAGGACTCTCGTTGTCTGCGCCTCTCCATCATTTTTAAAGAAGCATAATTAGCTCAAAAATTGACCAAAAGAATGAAAATTACACAGTTTTGAAGGAAGTTTTTAGCTGCAATAACTACGCAGTTCGATTTCGCTGGCTTTGCCTTCTTGACTTTTGGTTCAAAACTTTTCAGCTCTTTTATATCAGCGCGTTTGACTTGGTTTGTAGTCTGGAGCTCATAATTCGCAAATGAGTTCTTCTTGTGGATCTTCTCAACTTCTCAACTCCACTTTTTGATTCGATTGGAAATTCCAATTTTGA</canonical>
            <polymorphic>TATTTTGTCTTACTGTAGCTCTTCTTTGCGCATGTACTGTACCTCGGTGTAGATCAAAAAAACCACGTGTATTGTCCCTAGTCATAGTCCAACTTTCCCCCCCTCCCCCCCCCCCCCCATTCTTCTTCACTTCTATCCAGGGCTCAAATTTGGAATTTCTTTTTGAATCAAAAAAGTGAAATACAGAAATTGAAAATGTTCTCTTTTGAGCTACATAGATGCCAAGAAAGCTAAGCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAAWGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCCCAGCCCGACTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGGTTTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACGAGAGGACTCTCGTTGTCTGCGCCTCTCCATCATTTTTAAAGAAGCATAATTAGCTCAAAAATTGACCAAAAGAATGAAAATTACACAGTTTTGAAGGAAGTTTTTAGCTGCAATAACTACGCAGTTCGATTTCGCTGGCTTTGCCTTCTTGACTTTTGGTTCAAAACTTTTCAGCTCTTTTATATCAGCGCGTTTGACTTGGTTTGTAGTCTGGAGCTCATAATTCGCAAATGAGTTCTTCTTGTGGATCTTCTCAACTTCTCAACTCCACTTTTTGATTCGATTGGAAATTCCAATTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAGTAAAGTGAAATTTTGTAAGG</pcr_primer_p1>
		<pcr_primer_p2>AATTGATTCGAGAATGTTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>GCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATT</canonical_amplicon>
		<polymorphic_amplicon>GCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAAWGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26311</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>32832</contig_pos>
        <strand>+</strand>
        <context>GATTTCAAAA[A/T]TTTTTGGAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAA</left_flank>
        <right_flank>TTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTGTAGCTCTTCTTTGCGCATGTACTGTACCTCGGTGTAGATCAAAAAAACCACGTGTATTGTCCCTAGTCATAGTCCAACTTTCCCCCCCTCCCCCCCCCCCCCCATTCTTCTTCACTTCTATCCAGGGCTCAAATTTGGAATTTCTTTTTGAATCAAAAAAGTGAAATACAGAAATTGAAAATGTTCTCTTTTGAGCTACATAGATGCCAAGAAAGCTAAGCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCCCAGCCCGACTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGGTTTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACGAGAGGACTCTCGTTGTCTGCGCCTCTCCATCATTTTTAAAGAAGCATAATTAGCTCAAAAATTGACCAAAAGAATGAAAATTACACAGTTTTGAAGGAAGTTTTTAGCTGCAATAACTACGCAGTTCGATTTCGCTGGCTTTGCCTTCTTGACTTTTGGTTCAAAACTTTTCAGCTCTTTTATATCAGCGCGTTTGACTTGGTTTGTAGTCTGGAGCTCATAATTCGCAAATGAGTTCTTCTTGTGGATCTTCTCAACTTCTCAACTCCACTTTTTGATTCGATTGGAAATTCCAATTTTGAACCCAAAACTC</canonical>
            <polymorphic>ACTGTAGCTCTTCTTTGCGCATGTACTGTACCTCGGTGTAGATCAAAAAAACCACGTGTATTGTCCCTAGTCATAGTCCAACTTTCCCCCCCTCCCCCCCCCCCCCCATTCTTCTTCACTTCTATCCAGGGCTCAAATTTGGAATTTCTTTTTGAATCAAAAAAGTGAAATACAGAAATTGAAAATGTTCTCTTTTGAGCTACATAGATGCCAAGAAAGCTAAGCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAWTTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCCCAGCCCGACTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGGTTTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACGAGAGGACTCTCGTTGTCTGCGCCTCTCCATCATTTTTAAAGAAGCATAATTAGCTCAAAAATTGACCAAAAGAATGAAAATTACACAGTTTTGAAGGAAGTTTTTAGCTGCAATAACTACGCAGTTCGATTTCGCTGGCTTTGCCTTCTTGACTTTTGGTTCAAAACTTTTCAGCTCTTTTATATCAGCGCGTTTGACTTGGTTTGTAGTCTGGAGCTCATAATTCGCAAATGAGTTCTTCTTGTGGATCTTCTCAACTTCTCAACTCCACTTTTTGATTCGATTGGAAATTCCAATTTTGAACCCAAAACTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>477 186 135 94 46 30 25 7</canonical_bands>
                <polymorphic_bands>523 186 135 94 30 25 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>186 143 136 135 67 60 56 46 44 34 30 19 19 12 7 6</canonical_bands>
                <polymorphic_bands>186 143 136 135 90 67 60 56 34 30 19 19 12 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTAGTAAAGTGAAATTTTGTAAGG</pcr_primer_p1>
		<pcr_primer_p2>GAAATCGAACTGCGTAGTTATT</pcr_primer_p2>
		<pcr_amplicon_size>597</pcr_amplicon_size>
		<canonical_amplicon>GCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCCCAGCCCGACTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGGTTTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACGAGAGGACTCTCGTTGTCTGCGCCTCTCCATCATTTTTAAAGAAGCATAATTAGCTCAAAAATTGACCAAAAGAATGAAAATTACACAGTTTTGAAGGAAGTTTTTAGCTGCAATAACTACGCAGTTCGATTTC</canonical_amplicon>
		<polymorphic_amplicon>GCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAWTTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCCCAGCCCGACTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGGTTTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACGAGAGGACTCTCGTTGTCTGCGCCTCTCCATCATTTTTAAAGAAGCATAATTAGCTCAAAAATTGACCAAAAGAATGAAAATTACACAGTTTTGAAGGAAGTTTTTAGCTGCAATAACTACGCAGTTCGATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26312</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>32889</contig_pos>
        <strand></strand>
        <context>TCCCCAGCCC[G/A]RCTTTTCAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCCCAGCCC</left_flank>
        <right_flank>ACTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATTGTCCCTAGTCATAGTCCAACTTTCCCCCCCTCCCCCCCCCCCCCCATTCTTCTTCACTTCTATCCAGGGCTCAAATTTGGAATTTCTTTTTGAATCAAAAAAGTGAAATACAGAAATTGAAAATGTTCTCTTTTGAGCTACATAGATGCCAAGAAAGCTAAGCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCCCAGCCCGACTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGGTTTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACGAGAGGACTCTCGTTGTCTGCGCCTCTCCATCATTTTTAAAGAAGCATAATTAGCTCAAAAATTGACCAAAAGAATGAAAATTACACAGTTTTGAAGGAAGTTTTTAGCTGCAATAACTACGCAGTTCGATTTCGCTGGCTTTGCCTTCTTGACTTTTGGTTCAAAACTTTTCAGCTCTTTTATATCAGCGCGTTTGACTTGGTTTGTAGTCTGGAGCTCATAATTCGCAAATGAGTTCTTCTTGTGGATCTTCTCAACTTCTCAACTCCACTTTTTGATTCGATTGGAAATTCCAATTTTGAACCCAAAACTCTTCCTTCCCTCCTAACCCATACCACAATTCCAGGCTCCACAAATCCTCCCAGCATTT</canonical>
            <polymorphic>GTATTGTCCCTAGTCATAGTCCAACTTTCCCCCCCTCCCCCCCCCCCCCCATTCTTCTTCACTTCTATCCAGGGCTCAAATTTGGAATTTCTTTTTGAATCAAAAAAGTGAAATACAGAAATTGAAAATGTTCTCTTTTGAGCTACATAGATGCCAAGAAAGCTAAGCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCCCAGCCCRACTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGGTTTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACGAGAGGACTCTCGTTGTCTGCGCCTCTCCATCATTTTTAAAGAAGCATAATTAGCTCAAAAATTGACCAAAAGAATGAAAATTACACAGTTTTGAAGGAAGTTTTTAGCTGCAATAACTACGCAGTTCGATTTCGCTGGCTTTGCCTTCTTGACTTTTGGTTCAAAACTTTTCAGCTCTTTTATATCAGCGCGTTTGACTTGGTTTGTAGTCTGGAGCTCATAATTCGCAAATGAGTTCTTCTTGTGGATCTTCTCAACTTCTCAACTCCACTTTTTGATTCGATTGGAAATTCCAATTTTGAACCCAAAACTCTTCCTTCCCTCCTAACCCATACCACAATTCCAGGCTCCACAAATCCTCCCAGCATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAGTAAAGTGAAATTTTGTAAGG</pcr_primer_p1>
		<pcr_primer_p2>GAAATCGAACTGCGTAGTTATT</pcr_primer_p2>
		<pcr_amplicon_size>597</pcr_amplicon_size>
		<canonical_amplicon>GCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCCCAGCCCGACTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGGTTTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACGAGAGGACTCTCGTTGTCTGCGCCTCTCCATCATTTTTAAAGAAGCATAATTAGCTCAAAAATTGACCAAAAGAATGAAAATTACACAGTTTTGAAGGAAGTTTTTAGCTGCAATAACTACGCAGTTCGATTTC</canonical_amplicon>
		<polymorphic_amplicon>GCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCCCAGCCCRACTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGGTTTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACGAGAGGACTCTCGTTGTCTGCGCCTCTCCATCATTTTTAAAGAAGCATAATTAGCTCAAAAATTGACCAAAAGAATGAAAATTACACAGTTTTGAAGGAAGTTTTTAGCTGCAATAACTACGCAGTTCGATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26313</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>32890</contig_pos>
        <strand>+</strand>
        <context>CCCCAGCCCR[A/G]CTTTTCAGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCCCAGCCCG</left_flank>
        <right_flank>CTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTGTCCCTAGTCATAGTCCAACTTTCCCCCCCTCCCCCCCCCCCCCCATTCTTCTTCACTTCTATCCAGGGCTCAAATTTGGAATTTCTTTTTGAATCAAAAAAGTGAAATACAGAAATTGAAAATGTTCTCTTTTGAGCTACATAGATGCCAAGAAAGCTAAGCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCCCAGCCCGACTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGGTTTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACGAGAGGACTCTCGTTGTCTGCGCCTCTCCATCATTTTTAAAGAAGCATAATTAGCTCAAAAATTGACCAAAAGAATGAAAATTACACAGTTTTGAAGGAAGTTTTTAGCTGCAATAACTACGCAGTTCGATTTCGCTGGCTTTGCCTTCTTGACTTTTGGTTCAAAACTTTTCAGCTCTTTTATATCAGCGCGTTTGACTTGGTTTGTAGTCTGGAGCTCATAATTCGCAAATGAGTTCTTCTTGTGGATCTTCTCAACTTCTCAACTCCACTTTTTGATTCGATTGGAAATTCCAATTTTGAACCCAAAACTCTTCCTTCCCTCCTAACCCATACCACAATTCCAGGCTCCACAAATCCTCCCAGCATTTG</canonical>
            <polymorphic>TATTGTCCCTAGTCATAGTCCAACTTTCCCCCCCTCCCCCCCCCCCCCCATTCTTCTTCACTTCTATCCAGGGCTCAAATTTGGAATTTCTTTTTGAATCAAAAAAGTGAAATACAGAAATTGAAAATGTTCTCTTTTGAGCTACATAGATGCCAAGAAAGCTAAGCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCCCAGCCCGRCTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGGTTTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACGAGAGGACTCTCGTTGTCTGCGCCTCTCCATCATTTTTAAAGAAGCATAATTAGCTCAAAAATTGACCAAAAGAATGAAAATTACACAGTTTTGAAGGAAGTTTTTAGCTGCAATAACTACGCAGTTCGATTTCGCTGGCTTTGCCTTCTTGACTTTTGGTTCAAAACTTTTCAGCTCTTTTATATCAGCGCGTTTGACTTGGTTTGTAGTCTGGAGCTCATAATTCGCAAATGAGTTCTTCTTGTGGATCTTCTCAACTTCTCAACTCCACTTTTTGATTCGATTGGAAATTCCAATTTTGAACCCAAAACTCTTCCTTCCCTCCTAACCCATACCACAATTCCAGGCTCCACAAATCCTCCCAGCATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAGTAAAGTGAAATTTTGTAAGG</pcr_primer_p1>
		<pcr_primer_p2>GAAATCGAACTGCGTAGTTATT</pcr_primer_p2>
		<pcr_amplicon_size>597</pcr_amplicon_size>
		<canonical_amplicon>GCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCCCAGCCCGACTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGGTTTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACGAGAGGACTCTCGTTGTCTGCGCCTCTCCATCATTTTTAAAGAAGCATAATTAGCTCAAAAATTGACCAAAAGAATGAAAATTACACAGTTTTGAAGGAAGTTTTTAGCTGCAATAACTACGCAGTTCGATTTC</canonical_amplicon>
		<polymorphic_amplicon>GCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCCCAGCCCGRCTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGGTTTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACGAGAGGACTCTCGTTGTCTGCGCCTCTCCATCATTTTTAAAGAAGCATAATTAGCTCAAAAATTGACCAAAAGAATGAAAATTACACAGTTTTGAAGGAAGTTTTTAGCTGCAATAACTACGCAGTTCGATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26314</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>32969</contig_pos>
        <strand></strand>
        <context>tgaaaatcgg[T/C]tttcttcgag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGG</left_flank>
        <right_flank>TTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGAATTTCTTTTTGAATCAAAAAAGTGAAATACAGAAATTGAAAATGTTCTCTTTTGAGCTACATAGATGCCAAGAAAGCTAAGCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCCCAGCCCGACTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGGTTTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACGAGAGGACTCTCGTTGTCTGCGCCTCTCCATCATTTTTAAAGAAGCATAATTAGCTCAAAAATTGACCAAAAGAATGAAAATTACACAGTTTTGAAGGAAGTTTTTAGCTGCAATAACTACGCAGTTCGATTTCGCTGGCTTTGCCTTCTTGACTTTTGGTTCAAAACTTTTCAGCTCTTTTATATCAGCGCGTTTGACTTGGTTTGTAGTCTGGAGCTCATAATTCGCAAATGAGTTCTTCTTGTGGATCTTCTCAACTTCTCAACTCCACTTTTTGATTCGATTGGAAATTCCAATTTTGAACCCAAAACTCTTCCTTCCCTCCTAACCCATACCACAATTCCAGGCTCCACAAATCCTCCCAGCATTTGGCAACCGCGCTCCATCGAACTCCTCTCTTGGCTCTGATCGTCGGTCGGGTTCAGGAGTGAGCAGCAGCGATGTCTATCC</canonical>
            <polymorphic>TTTGGAATTTCTTTTTGAATCAAAAAAGTGAAATACAGAAATTGAAAATGTTCTCTTTTGAGCTACATAGATGCCAAGAAAGCTAAGCTAGTAAAGTGAAATTTTGTAAGGCAGCATGAAAAATCTAAAAATTTCCTTTAAAACTATTTAACCTTCTTTTTATTTGGACAACGTTGAAGCCAGTTATGCGCCTTTAAAGTTGACAGAGAGACGCAGACAATAAGAGCACTCTCGCTTCTCTGCGTCTATCTAAAAACTTTGAAACGCTGTATCTCGGCTCCAGGCTGGCCTTCTATTTCAAGTATTATTGAAGGAAATTCAAAAAATATTAAAAATCTACAGAAAAAAAAATGATTTCAAAAATTTTTGGAGTTCTATAAAGTAGATTTTTAACATTCTCGAATCAATTTCCCCAGCCCGACTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGGYTTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACGAGAGGACTCTCGTTGTCTGCGCCTCTCCATCATTTTTAAAGAAGCATAATTAGCTCAAAAATTGACCAAAAGAATGAAAATTACACAGTTTTGAAGGAAGTTTTTAGCTGCAATAACTACGCAGTTCGATTTCGCTGGCTTTGCCTTCTTGACTTTTGGTTCAAAACTTTTCAGCTCTTTTATATCAGCGCGTTTGACTTGGTTTGTAGTCTGGAGCTCATAATTCGCAAATGAGTTCTTCTTGTGGATCTTCTCAACTTCTCAACTCCACTTTTTGATTCGATTGGAAATTCCAATTTTGAACCCAAAACTCTTCCTTCCCTCCTAACCCATACCACAATTCCAGGCTCCACAAATCCTCCCAGCATTTGGCAACCGCGCTCCATCGAACTCCTCTCTTGGCTCTGATCGTCGGTCGGGTTCAGGAGTGAGCAGCAGCGATGTCTATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAACATTCTCGAATCAATTTC</pcr_primer_p1>
		<pcr_primer_p2>AAATCGAACTGCGTAGTTATTG</pcr_primer_p2>
		<pcr_amplicon_size>294</pcr_amplicon_size>
		<canonical_amplicon>TTTAACATTCTCGAATCAATTTCCCCAGCCCGACTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGGTTTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACGAGAGGACTCTCGTTGTCTGCGCCTCTCCATCATTTTTAAAGAAGCATAATTAGCTCAAAAATTGACCAAAAGAATGAAAATTACACAGTTTTGAAGGAAGTTTTTAGCTGCAATAACTACGCAGTTCGATTT</canonical_amplicon>
		<polymorphic_amplicon>TTTAACATTCTCGAATCAATTTCCCCAGCCCGACTTTTCAGAGTTTTTTTCAAAAAAAAAAGTTGAACTGTTTAATTAGTATCACAGTTCGCTAAAAATCATGAAAATCGGYTTTCTTCGAGATACAGCGATTAGAAGTTTTGAAAGAGACGCAGAGAAACGAGAGGACTCTCGTTGTCTGCGCCTCTCCATCATTTTTAAAGAAGCATAATTAGCTCAAAAATTGACCAAAAGAATGAAAATTACACAGTTTTGAAGGAAGTTTTTAGCTGCAATAACTACGCAGTTCGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26315</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>39226</contig_pos>
        <strand>+</strand>
        <context>TTTAATGAAA[A/T]TTAGAATATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGCCCTTCTAATACAGGTTTTAAGGTAAAATTTTCAGAACTTTAATGAAA</left_flank>
        <right_flank>TTAGAATATTCGAATTTTCAAAGTTTTATGAAATTGAAAATTTTCGAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAATTCATGAAAATCTGAAATATAGAGTTTCGACAAATTTCTATTGAATTGTGGAGTTACCGGAATATTTTCCAATGAAAAAGTACGGAAATTTTCAGATTTTAATACACATTTTGAAGGGGCCCTTCTATTACGGGGGCCCGTCTATTACAGGGGGCTCTTCTATTACAGGAGGCCTTCCTATTTTTCCATACCCCTCTCGGAGGGCCCTTCTATTACGGGGTGCCCTTCAATTACAGAGGGCCCTTCTAATACAGGTTTTACAGTTACATATTTATAACTTTAATGAAATTTAGAATACCGTAAAACCTGTATTAGAAGGGCCGGCCCTTCTATTTTTCCAATGTGCTTCCGGAGGGCCCTTTCTATTTTTACGGCCAGTTTTTTCCAAAATTTTGCATCACATTTTGAAGGGGGCTCTTCTATTTTTCCAAGCCCCTCTCGGAGGGCCCTTCTAATACAGGTTTTAAGGTAAAATTTTCAGAACTTTAATGAAATTTAGAATATTCGAATTTTCAAAGTTTTATGAAATTGAAAATTTTCGAAACTGATACAAAATCAGTATTTTCAGCACGAAAATAAAAGGAAATTTCAAGAATCCCAATCTCAAATATTCGAAAAATTTAAAAAAAAAAGAGATTTTTGCAATTTTCGGACAAAAAAACTGGGTTCGGAAGTCACCTCAAATTATCCTCAAAATTTTTTATTCTTGATTTTTATTTAATCTTTTTTTTTCATAATTTTTTTTTGCAGTCTGATTTTCATAGCTTCTCAAAAAATATCGTTTTGTTCGATTCTAATTTTCCCTTCTTCAATCGTTTGGAACATTTTGTCTCCGATTTCAAAAACCTTACGACCCAGTTTTTATATAGGTGTGTATCTGACGGTTGGTTCAACACACAGAATGTCCTTGGAATAGAAGGATAATGCTTTTTGGAAAAAAACGAACGGAAAAAAGAGAAGGTGTTGGTTTTGTGGTGGTGGATTTTCGGATGAAA</canonical>
            <polymorphic>CAAAATTCATGAAAATCTGAAATATAGAGTTTCGACAAATTTCTATTGAATTGTGGAGTTACCGGAATATTTTCCAATGAAAAAGTACGGAAATTTTCAGATTTTAATACACATTTTGAAGGGGCCCTTCTATTACGGGGGCCCGTCTATTACAGGGGGCTCTTCTATTACAGGAGGCCTTCCTATTTTTCCATACCCCTCTCGGAGGGCCCTTCTATTACGGGGTGCCCTTCAATTACAGAGGGCCCTTCTAATACAGGTTTTACAGTTACATATTTATAACTTTAATGAAATTTAGAATACCGTAAAACCTGTATTAGAAGGGCCGGCCCTTCTATTTTTCCAATGTGCTTCCGGAGGGCCCTTTCTATTTTTACGGCCAGTTTTTTCCAAAATTTTGCATCACATTTTGAAGGGGGCTCTTCTATTTTTCCAAGCCCCTCTCGGAGGGCCCTTCTAATACAGGTTTTAAGGTAAAATTTTCAGAACTTTAATGAAAWTTAGAATATTCGAATTTTCAAAGTTTTATGAAATTGAAAATTTTCGAAACTGATACAAAATCAGTATTTTCAGCACGAAAATAAAAGGAAATTTCAAGAATCCCAATCTCAAATATTCGAAAAATTTAAAAAAAAAAGAGATTTTTGCAATTTTCGGACAAAAAAACTGGGTTCGGAAGTCACCTCAAATTATCCTCAAAATTTTTTATTCTTGATTTTTATTTAATCTTTTTTTTTCATAATTTTTTTTTGCAGTCTGATTTTCATAGCTTCTCAAAAAATATCGTTTTGTTCGATTCTAATTTTCCCTTCTTCAATCGTTTGGAACATTTTGTCTCCGATTTCAAAAACCTTACGACCCAGTTTTTATATAGGTGTGTATCTGACGGTTGGTTCAACACACAGAATGTCCTTGGAATAGAAGGATAATGCTTTTTGGAAAAAAACGAACGGAAAAAAGAGAAGGTGTTGGTTTTGTGGTGGTGGATTTTCGGATGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>301 200 102 84 77 54 51 34 33 26 20 15 3</canonical_bands>
                <polymorphic_bands>301 200 102 84 77 54 51 35 34 33 26 3</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>200 142 102 84 60 58 51 43 41 39 34 33 26 20 19 15 12 11 7 3</canonical_bands>
                <polymorphic_bands>200 142 102 84 60 58 51 43 41 39 35 34 33 26 19 12 11 7 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTTTTACGGCCAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAATATTTGAGATTGGGATTCTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTATTTTTACGGCCAGTTTTTTCCAAAATTTTGCATCACATTTTGAAGGGGGCTCTTCTATTTTTCCAAGCCCCTCTCGGAGGGCCCTTCTAATACAGGTTTTAAGGTAAAATTTTCAGAACTTTAATGAAATTTAGAATATTCGAATTTTCAAAGTTTTATGAAATTGAAAATTTTCGAAACTGATACAAAATCAGTATTTTCAGCACGAAAATAAAAGGAAATTTCAAGAATCCCAATCTCAAATATTC</canonical_amplicon>
		<polymorphic_amplicon>CTATTTTTACGGCCAGTTTTTTCCAAAATTTTGCATCACATTTTGAAGGGGGCTCTTCTATTTTTCCAAGCCCCTCTCGGAGGGCCCTTCTAATACAGGTTTTAAGGTAAAATTTTCAGAACTTTAATGAAAWTTAGAATATTCGAATTTTCAAAGTTTTATGAAATTGAAAATTTTCGAAACTGATACAAAATCAGTATTTTCAGCACGAAAATAAAAGGAAATTTCAAGAATCCCAATCTCAAATATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26316</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>44810</contig_pos>
        <strand>+</strand>
        <context>TTTTCCTTCA[A/C]ARCTCTAAMT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTGATGGTTTTGAAGGGTTTTTGACACCTTTTAAACGTATTTTCCTTCA</left_flank>
        <right_flank>AACTCTAATTTTTTTTTCAAATATTCAAACCCGTTTTTAGGCCCCTAAAG</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTAAACTCTGCTAATTCAGAACATTCAAATTTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGAGACTTCCCCTTTTTGACCCATTCCGATTACCTCTAATTTCCCCCCGTTCGATTTTCTATTGTCTGCGTCTCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAAAAGGAACATACGCAGCCTTTTCATCCCTCTTTTTATCCGATTCTGGAGACACCACCCCCCCCCCCGACTGACCCCCTCTCTACTATGCATTAATTATGAATAGTGAGTGGTCCCGTTTTGGATAACGCTTGGACCATTTTTACCGCGTAGCTCGGTATTATTGATGGTTTTGAAGGGTTTTTGACACCTTTTAAACGTATTTTCCTTCAAAACTCTAATTTTTTTTTCAAATATTCAAACCCGTTTTTAGGCCCCTAAAGACAACTGTAAAACTTATTTTCATATTTTTGAGTAATTTTAATGGTTTTCACATTTGACATGATTCTAGAGCTCAATCTACCCGGCACCCATACGTTTGATACTTGTGGACCGTCTGTTGGCTATTTATACGTTTTTAGACACTTTTAACCACTATTTAGACAATTTTAAAATCATTTCAATCGTTTTTGACACTTTCACCCTTTTCTAGACCAATTTAGCTTTTTTTTGGTAATTTTCACAATCCAAACAGTCCAAAAGTGTTCGAAAACCTTTCAACTTTATTTTAAATTTTTCAAGTCCTTCAAACCGTTATAACAACTTTTTAGAGCCAAGTTTTTCGGATTTCTAGGTCATGACCGAGTTCTTTGGATTTCTAGGCCATGACCGAATTTTTCGGGTTTCTGGGCCATATTGCGTTTTTAGGTTTTCTAGGTCATGACCGAGTTTAA</canonical>
            <polymorphic>CCTAAACTCTGCTAATTCAGAACATTCAAATTTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGAGACTTCCCCTTTTTGACCCATTCCGATTACCTCTAATTTCCCCCCGTTCGATTTTCTATTGTCTGCGTCTCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAAAAGGAACATACGCAGCCTTTTCATCCCTCTTTTTATCCGATTCTGGAGACACCACCCCCCCCCCCGACTGACCCCCTCTCTACTATGCATTAATTATGAATAGTGAGTGGTCCCGTTTTGGATAACGCTTGGACCATTTTTACCGCGTAGCTCGGTATTATTGATGGTTTTGAAGGGTTTTTGACACCTTTTAAACGTATTTTCCTTCAMAACTCTAATTTTTTTTTCAAATATTCAAACCCGTTTTTAGGCCCCTAAAGACAACTGTAAAACTTATTTTCATATTTTTGAGTAATTTTAATGGTTTTCACATTTGACATGATTCTAGAGCTCAATCTACCCGGCACCCATACGTTTGATACTTGTGGACCGTCTGTTGGCTATTTATACGTTTTTAGACACTTTTAACCACTATTTAGACAATTTTAAAATCATTTCAATCGTTTTTGACACTTTCACCCTTTTCTAGACCAATTTAGCTTTTTTTTGGTAATTTTCACAATCCAAACAGTCCAAAAGTGTTCGAAAACCTTTCAACTTTATTTTAAATTTTTCAAGTCCTTCAAACCGTTATAACAACTTTTTAGAGCCAAGTTTTTCGGATTTCTAGGTCATGACCGAGTTCTTTGGATTTCTAGGCCATGACCGAATTTTTCGGGTTTCTGGGCCATATTGCGTTTTTAGGTTTTCTAGGTCATGACCGAGTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGCTCGGTATTATTGATGGT</pcr_primer_p1>
		<pcr_primer_p2>AAAACGTATAAATAGCCAACAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTAGCTCGGTATTATTGATGGTTTTGAAGGGTTTTTGACACCTTTTAAACGTATTTTCCTTCAAAACTCTAATTTTTTTTTCAAATATTCAAACCCGTTTTTAGGCCCCTAAAGACAACTGTAAAACTTATTTTCATATTTTTGAGTAATTTTAATGGTTTTCACATTTGACATGATTCTAGAGCTCAATCTACCCGGCACCCATACGTTTGATACTTGTGGACCGTCTGTTGGCTATTTATACGTTTT</canonical_amplicon>
		<polymorphic_amplicon>GTAGCTCGGTATTATTGATGGTTTTGAAGGGTTTTTGACACCTTTTAAACGTATTTTCCTTCAMAACTCTAATTTTTTTTTCAAATATTCAAACCCGTTTTTAGGCCCCTAAAGACAACTGTAAAACTTATTTTCATATTTTTGAGTAATTTTAATGGTTTTCACATTTGACATGATTCTAGAGCTCAATCTACCCGGCACCCATACGTTTGATACTTGTGGACCGTCTGTTGGCTATTTATACGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26317</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>44812</contig_pos>
        <strand>+</strand>
        <context>TTCCTTCAMA[A/G]CTCTAAMTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATGGTTTTGAAGGGTTTTTGACACCTTTTAAACGTATTTTCCTTCAAA</left_flank>
        <right_flank>CTCTAATTTTTTTTTCAAATATTCAAACCCGTTTTTAGGCCCCTAAAGAC</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAACTCTGCTAATTCAGAACATTCAAATTTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGAGACTTCCCCTTTTTGACCCATTCCGATTACCTCTAATTTCCCCCCGTTCGATTTTCTATTGTCTGCGTCTCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAAAAGGAACATACGCAGCCTTTTCATCCCTCTTTTTATCCGATTCTGGAGACACCACCCCCCCCCCCGACTGACCCCCTCTCTACTATGCATTAATTATGAATAGTGAGTGGTCCCGTTTTGGATAACGCTTGGACCATTTTTACCGCGTAGCTCGGTATTATTGATGGTTTTGAAGGGTTTTTGACACCTTTTAAACGTATTTTCCTTCAAAACTCTAATTTTTTTTTCAAATATTCAAACCCGTTTTTAGGCCCCTAAAGACAACTGTAAAACTTATTTTCATATTTTTGAGTAATTTTAATGGTTTTCACATTTGACATGATTCTAGAGCTCAATCTACCCGGCACCCATACGTTTGATACTTGTGGACCGTCTGTTGGCTATTTATACGTTTTTAGACACTTTTAACCACTATTTAGACAATTTTAAAATCATTTCAATCGTTTTTGACACTTTCACCCTTTTCTAGACCAATTTAGCTTTTTTTTGGTAATTTTCACAATCCAAACAGTCCAAAAGTGTTCGAAAACCTTTCAACTTTATTTTAAATTTTTCAAGTCCTTCAAACCGTTATAACAACTTTTTAGAGCCAAGTTTTTCGGATTTCTAGGTCATGACCGAGTTCTTTGGATTTCTAGGCCATGACCGAATTTTTCGGGTTTCTGGGCCATATTGCGTTTTTAGGTTTTCTAGGTCATGACCGAGTTTAACC</canonical>
            <polymorphic>TAAACTCTGCTAATTCAGAACATTCAAATTTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGAGACTTCCCCTTTTTGACCCATTCCGATTACCTCTAATTTCCCCCCGTTCGATTTTCTATTGTCTGCGTCTCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAAAAGGAACATACGCAGCCTTTTCATCCCTCTTTTTATCCGATTCTGGAGACACCACCCCCCCCCCCGACTGACCCCCTCTCTACTATGCATTAATTATGAATAGTGAGTGGTCCCGTTTTGGATAACGCTTGGACCATTTTTACCGCGTAGCTCGGTATTATTGATGGTTTTGAAGGGTTTTTGACACCTTTTAAACGTATTTTCCTTCAAARCTCTAATTTTTTTTTCAAATATTCAAACCCGTTTTTAGGCCCCTAAAGACAACTGTAAAACTTATTTTCATATTTTTGAGTAATTTTAATGGTTTTCACATTTGACATGATTCTAGAGCTCAATCTACCCGGCACCCATACGTTTGATACTTGTGGACCGTCTGTTGGCTATTTATACGTTTTTAGACACTTTTAACCACTATTTAGACAATTTTAAAATCATTTCAATCGTTTTTGACACTTTCACCCTTTTCTAGACCAATTTAGCTTTTTTTTGGTAATTTTCACAATCCAAACAGTCCAAAAGTGTTCGAAAACCTTTCAACTTTATTTTAAATTTTTCAAGTCCTTCAAACCGTTATAACAACTTTTTAGAGCCAAGTTTTTCGGATTTCTAGGTCATGACCGAGTTCTTTGGATTTCTAGGCCATGACCGAATTTTTCGGGTTTCTGGGCCATATTGCGTTTTTAGGTTTTCTAGGTCATGACCGAGTTTAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGCTCGGTATTATTGATGGT</pcr_primer_p1>
		<pcr_primer_p2>AAAACGTATAAATAGCCAACAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTAGCTCGGTATTATTGATGGTTTTGAAGGGTTTTTGACACCTTTTAAACGTATTTTCCTTCAAAACTCTAATTTTTTTTTCAAATATTCAAACCCGTTTTTAGGCCCCTAAAGACAACTGTAAAACTTATTTTCATATTTTTGAGTAATTTTAATGGTTTTCACATTTGACATGATTCTAGAGCTCAATCTACCCGGCACCCATACGTTTGATACTTGTGGACCGTCTGTTGGCTATTTATACGTTTT</canonical_amplicon>
		<polymorphic_amplicon>GTAGCTCGGTATTATTGATGGTTTTGAAGGGTTTTTGACACCTTTTAAACGTATTTTCCTTCAAARCTCTAATTTTTTTTTCAAATATTCAAACCCGTTTTTAGGCCCCTAAAGACAACTGTAAAACTTATTTTCATATTTTTGAGTAATTTTAATGGTTTTCACATTTGACATGATTCTAGAGCTCAATCTACCCGGCACCCATACGTTTGATACTTGTGGACCGTCTGTTGGCTATTTATACGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26318</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>44819</contig_pos>
        <strand>+</strand>
        <context>AMARCTCTAA[A/C]TTTTTTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTGAAGGGTTTTTGACACCTTTTAAACGTATTTTCCTTCAAAACTCTAA</left_flank>
        <right_flank>TTTTTTTTCAAATATTCAAACCCGTTTTTAGGCCCCTAAAGACAACTGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCTAATTCAGAACATTCAAATTTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGAGACTTCCCCTTTTTGACCCATTCCGATTACCTCTAATTTCCCCCCGTTCGATTTTCTATTGTCTGCGTCTCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAAAAGGAACATACGCAGCCTTTTCATCCCTCTTTTTATCCGATTCTGGAGACACCACCCCCCCCCCCGACTGACCCCCTCTCTACTATGCATTAATTATGAATAGTGAGTGGTCCCGTTTTGGATAACGCTTGGACCATTTTTACCGCGTAGCTCGGTATTATTGATGGTTTTGAAGGGTTTTTGACACCTTTTAAACGTATTTTCCTTCAAAACTCTAATTTTTTTTTCAAATATTCAAACCCGTTTTTAGGCCCCTAAAGACAACTGTAAAACTTATTTTCATATTTTTGAGTAATTTTAATGGTTTTCACATTTGACATGATTCTAGAGCTCAATCTACCCGGCACCCATACGTTTGATACTTGTGGACCGTCTGTTGGCTATTTATACGTTTTTAGACACTTTTAACCACTATTTAGACAATTTTAAAATCATTTCAATCGTTTTTGACACTTTCACCCTTTTCTAGACCAATTTAGCTTTTTTTTGGTAATTTTCACAATCCAAACAGTCCAAAAGTGTTCGAAAACCTTTCAACTTTATTTTAAATTTTTCAAGTCCTTCAAACCGTTATAACAACTTTTTAGAGCCAAGTTTTTCGGATTTCTAGGTCATGACCGAGTTCTTTGGATTTCTAGGCCATGACCGAATTTTTCGGGTTTCTGGGCCATATTGCGTTTTTAGGTTTTCTAGGTCATGACCGAGTTTAACCAAATTTG</canonical>
            <polymorphic>TGCTAATTCAGAACATTCAAATTTCCTGACCCAGTTTTCAGAGCCAATTAAATTCGCTTTTCCACCATTTTCTAAACCTCTTCTCCCCTCCATCCATTTTTGATACATTTGTGACCTTTTGAACGTGTCTCCTTATAAAGAGACTTCCCCTTTTTGACCCATTCCGATTACCTCTAATTTCCCCCCGTTCGATTTTCTATTGTCTGCGTCTCTCTTCTCTCTCTCTCCTCCTGTTGTCCATGGTCACGAAGGTCCTTCCCTGACACGGACTAACACACTAAAAGGAACATACGCAGCCTTTTCATCCCTCTTTTTATCCGATTCTGGAGACACCACCCCCCCCCCCGACTGACCCCCTCTCTACTATGCATTAATTATGAATAGTGAGTGGTCCCGTTTTGGATAACGCTTGGACCATTTTTACCGCGTAGCTCGGTATTATTGATGGTTTTGAAGGGTTTTTGACACCTTTTAAACGTATTTTCCTTCAAAACTCTAAMTTTTTTTTCAAATATTCAAACCCGTTTTTAGGCCCCTAAAGACAACTGTAAAACTTATTTTCATATTTTTGAGTAATTTTAATGGTTTTCACATTTGACATGATTCTAGAGCTCAATCTACCCGGCACCCATACGTTTGATACTTGTGGACCGTCTGTTGGCTATTTATACGTTTTTAGACACTTTTAACCACTATTTAGACAATTTTAAAATCATTTCAATCGTTTTTGACACTTTCACCCTTTTCTAGACCAATTTAGCTTTTTTTTGGTAATTTTCACAATCCAAACAGTCCAAAAGTGTTCGAAAACCTTTCAACTTTATTTTAAATTTTTCAAGTCCTTCAAACCGTTATAACAACTTTTTAGAGCCAAGTTTTTCGGATTTCTAGGTCATGACCGAGTTCTTTGGATTTCTAGGCCATGACCGAATTTTTCGGGTTTCTGGGCCATATTGCGTTTTTAGGTTTTCTAGGTCATGACCGAGTTTAACCAAATTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>197 128 125 125 101 77 65 56 51 26 19 15 6 5 4</canonical_bands>
                <polymorphic_bands>202 197 128 125 101 65 56 51 26 19 15 6 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGCTCGGTATTATTGATGGT</pcr_primer_p1>
		<pcr_primer_p2>AAAACGTATAAATAGCCAACAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTAGCTCGGTATTATTGATGGTTTTGAAGGGTTTTTGACACCTTTTAAACGTATTTTCCTTCAAAACTCTAATTTTTTTTTCAAATATTCAAACCCGTTTTTAGGCCCCTAAAGACAACTGTAAAACTTATTTTCATATTTTTGAGTAATTTTAATGGTTTTCACATTTGACATGATTCTAGAGCTCAATCTACCCGGCACCCATACGTTTGATACTTGTGGACCGTCTGTTGGCTATTTATACGTTTT</canonical_amplicon>
		<polymorphic_amplicon>GTAGCTCGGTATTATTGATGGTTTTGAAGGGTTTTTGACACCTTTTAAACGTATTTTCCTTCAAAACTCTAAMTTTTTTTTCAAATATTCAAACCCGTTTTTAGGCCCCTAAAGACAACTGTAAAACTTATTTTCATATTTTTGAGTAATTTTAATGGTTTTCACATTTGACATGATTCTAGAGCTCAATCTACCCGGCACCCATACGTTTGATACTTGTGGACCGTCTGTTGGCTATTTATACGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26319</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>45426</contig_pos>
        <strand>+</strand>
        <context>aatctaattt[G/T]gaaaaaatta</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAACTTCCATTTCTTTTTCAACTGTGATTTATTTTTTAAAAATCTAATTT</left_flank>
        <right_flank>GAAAAAATTAAAATTGTTCTCTAAAAACTGAAATTGTTATTGACCGATGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGCTCAATCTACCCGGCACCCATACGTTTGATACTTGTGGACCGTCTGTTGGCTATTTATACGTTTTTAGACACTTTTAACCACTATTTAGACAATTTTAAAATCATTTCAATCGTTTTTGACACTTTCACCCTTTTCTAGACCAATTTAGCTTTTTTTTGGTAATTTTCACAATCCAAACAGTCCAAAAGTGTTCGAAAACCTTTCAACTTTATTTTAAATTTTTCAAGTCCTTCAAACCGTTATAACAACTTTTTAGAGCCAAGTTTTTCGGATTTCTAGGTCATGACCGAGTTCTTTGGATTTCTAGGCCATGACCGAATTTTTCGGGTTTCTGGGCCATATTGCGTTTTTAGGTTTTCTAGGTCATGACCGAGTTTAACCAAATTTGACCTGTTTCTCAAAATTCCGATTTGTCTAAATTCTATAATAGTTTTTCTAGTTTTTCAACTTCCATTTCTTTTTCAACTGTGATTTATTTTTTAAAAATCTAATTTTGAAAAAATTAAAATTGTTCTCTAAAAACTGAAATTGTTATTGACCGATGTCTAATTCACACTTTCACACTAATTACTCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTA</canonical>
            <polymorphic>AGAGCTCAATCTACCCGGCACCCATACGTTTGATACTTGTGGACCGTCTGTTGGCTATTTATACGTTTTTAGACACTTTTAACCACTATTTAGACAATTTTAAAATCATTTCAATCGTTTTTGACACTTTCACCCTTTTCTAGACCAATTTAGCTTTTTTTTGGTAATTTTCACAATCCAAACAGTCCAAAAGTGTTCGAAAACCTTTCAACTTTATTTTAAATTTTTCAAGTCCTTCAAACCGTTATAACAACTTTTTAGAGCCAAGTTTTTCGGATTTCTAGGTCATGACCGAGTTCTTTGGATTTCTAGGCCATGACCGAATTTTTCGGGTTTCTGGGCCATATTGCGTTTTTAGGTTTTCTAGGTCATGACCGAGTTTAACCAAATTTGACCTGTTTCTCAAAATTCCGATTTGTCTAAATTCTATAATAGTTTTTCTAGTTTTTCAACTTCCATTTCTTTTTCAACTGTGATTTATTTTTTAAAAATCTAATTTKGAAAAAATTAAAATTGTTCTCTAAAAACTGAAATTGTTATTGACCGATGTCTAATTCACACTTTCACACTAATTACTCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTGACCTGTTTCTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>GACTCAGGAAAAGGTCACTTC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>AAATTTGACCTGTTTCTCAAAATTCCGATTTGTCTAAATTCTATAATAGTTTTTCTAGTTTTTCAACTTCCATTTCTTTTTCAACTGTGATTTATTTTTTAAAAATCTAATTTTGAAAAAATTAAAATTGTTCTCTAAAAACTGAAATTGTTATTGACCGATGTCTAATTCACACTTTCACACTAATTACTCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTC</canonical_amplicon>
		<polymorphic_amplicon>AAATTTGACCTGTTTCTCAAAATTCCGATTTGTCTAAATTCTATAATAGTTTTTCTAGTTTTTCAACTTCCATTTCTTTTTCAACTGTGATTTATTTTTTAAAAATCTAATTTKGAAAAAATTAAAATTGTTCTCTAAAAACTGAAATTGTTATTGACCGATGTCTAATTCACACTTTCACACTAATTACTCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26320</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>45441</contig_pos>
        <strand>+</strand>
        <context>aaattaaaat[A/T]GTTCTCTAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCAACTGTGATTTATTTTTTAAAAATCTAATTTTGAAAAAATTAAAAT</left_flank>
        <right_flank>GTTCTCTAAAAACTGAAATTGTTATTGACCGATGTCTAATTCACACTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGCACCCATACGTTTGATACTTGTGGACCGTCTGTTGGCTATTTATACGTTTTTAGACACTTTTAACCACTATTTAGACAATTTTAAAATCATTTCAATCGTTTTTGACACTTTCACCCTTTTCTAGACCAATTTAGCTTTTTTTTGGTAATTTTCACAATCCAAACAGTCCAAAAGTGTTCGAAAACCTTTCAACTTTATTTTAAATTTTTCAAGTCCTTCAAACCGTTATAACAACTTTTTAGAGCCAAGTTTTTCGGATTTCTAGGTCATGACCGAGTTCTTTGGATTTCTAGGCCATGACCGAATTTTTCGGGTTTCTGGGCCATATTGCGTTTTTAGGTTTTCTAGGTCATGACCGAGTTTAACCAAATTTGACCTGTTTCTCAAAATTCCGATTTGTCTAAATTCTATAATAGTTTTTCTAGTTTTTCAACTTCCATTTCTTTTTCAACTGTGATTTATTTTTTAAAAATCTAATTTTGAAAAAATTAAAATTGTTCTCTAAAAACTGAAATTGTTATTGACCGATGTCTAATTCACACTTTCACACTAATTACTCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTACCTGCTTTTTTAGTA</canonical>
            <polymorphic>CGGCACCCATACGTTTGATACTTGTGGACCGTCTGTTGGCTATTTATACGTTTTTAGACACTTTTAACCACTATTTAGACAATTTTAAAATCATTTCAATCGTTTTTGACACTTTCACCCTTTTCTAGACCAATTTAGCTTTTTTTTGGTAATTTTCACAATCCAAACAGTCCAAAAGTGTTCGAAAACCTTTCAACTTTATTTTAAATTTTTCAAGTCCTTCAAACCGTTATAACAACTTTTTAGAGCCAAGTTTTTCGGATTTCTAGGTCATGACCGAGTTCTTTGGATTTCTAGGCCATGACCGAATTTTTCGGGTTTCTGGGCCATATTGCGTTTTTAGGTTTTCTAGGTCATGACCGAGTTTAACCAAATTTGACCTGTTTCTCAAAATTCCGATTTGTCTAAATTCTATAATAGTTTTTCTAGTTTTTCAACTTCCATTTCTTTTTCAACTGTGATTTATTTTTTAAAAATCTAATTTTGAAAAAATTAAAATWGTTCTCTAAAAACTGAAATTGTTATTGACCGATGTCTAATTCACACTTTCACACTAATTACTCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTACCTGCTTTTTTAGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>127 101 96 80 72 65 59 57 56 51 51 36 21 20 19 19 18 16 11 10 9 6</canonical_bands>
                <polymorphic_bands>127 101 96 80 72 65 59 57 56 51 51 36 26 21 19 19 18 16 11 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTTGACCTGTTTCTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>GACTCAGGAAAAGGTCACTTC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>AAATTTGACCTGTTTCTCAAAATTCCGATTTGTCTAAATTCTATAATAGTTTTTCTAGTTTTTCAACTTCCATTTCTTTTTCAACTGTGATTTATTTTTTAAAAATCTAATTTTGAAAAAATTAAAATTGTTCTCTAAAAACTGAAATTGTTATTGACCGATGTCTAATTCACACTTTCACACTAATTACTCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTC</canonical_amplicon>
		<polymorphic_amplicon>AAATTTGACCTGTTTCTCAAAATTCCGATTTGTCTAAATTCTATAATAGTTTTTCTAGTTTTTCAACTTCCATTTCTTTTTCAACTGTGATTTATTTTTTAAAAATCTAATTTTGAAAAAATTAAAATWGTTCTCTAAAAACTGAAATTGTTATTGACCGATGTCTAATTCACACTTTCACACTAATTACTCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26321</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>45670</contig_pos>
        <strand></strand>
        <context>taatcatttt[G/T]ttagtcaacg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTT</left_flank>
        <right_flank>TTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATAACAACTTTTTAGAGCCAAGTTTTTCGGATTTCTAGGTCATGACCGAGTTCTTTGGATTTCTAGGCCATGACCGAATTTTTCGGGTTTCTGGGCCATATTGCGTTTTTAGGTTTTCTAGGTCATGACCGAGTTTAACCAAATTTGACCTGTTTCTCAAAATTCCGATTTGTCTAAATTCTATAATAGTTTTTCTAGTTTTTCAACTTCCATTTCTTTTTCAACTGTGATTTATTTTTTAAAAATCTAATTTTGAAAAAATTAAAATTGTTCTCTAAAAACTGAAATTGTTATTGACCGATGTCTAATTCACACTTTCACACTAATTACTCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTACCTGCTTTTTTAGTATTATCATAACTTCGACCTTAATTATCTCAATTCCTGTAAATGGTATTGAATAGTTGCGAATTAGCAAAATGTGTAAAATTATAATAATCAAAGTATAATAATCATTTTATAAGTTAACATCTTTTTGATATCTTTCACAGCAACTGAGATAATCAGAGTTGAACTTTATCCATCCGTAATTTTGGGCATCTTTTCCGAATCTAACTTTTTTCTACTTTTTTCTTTTCCA</canonical>
            <polymorphic>TTATAACAACTTTTTAGAGCCAAGTTTTTCGGATTTCTAGGTCATGACCGAGTTCTTTGGATTTCTAGGCCATGACCGAATTTTTCGGGTTTCTGGGCCATATTGCGTTTTTAGGTTTTCTAGGTCATGACCGAGTTTAACCAAATTTGACCTGTTTCTCAAAATTCCGATTTGTCTAAATTCTATAATAGTTTTTCTAGTTTTTCAACTTCCATTTCTTTTTCAACTGTGATTTATTTTTTAAAAATCTAATTTTGAAAAAATTAAAATTGTTCTCTAAAAACTGAAATTGTTATTGACCGATGTCTAATTCACACTTTCACACTAATTACTCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTKTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTACCTGCTTTTTTAGTATTATCATAACTTCGACCTTAATTATCTCAATTCCTGTAAATGGTATTGAATAGTTGCGAATTAGCAAAATGTGTAAAATTATAATAATCAAAGTATAATAATCATTTTATAAGTTAACATCTTTTTGATATCTTTCACAGCAACTGAGATAATCAGAGTTGAACTTTATCCATCCGTAATTTTGGGCATCTTTTCCGAATCTAACTTTTTTCTACTTTTTTCTTTTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTGACCTTTTCCTGAGTC</pcr_primer_p1>
		<pcr_primer_p2>TAGTTATGGGATAAGGCAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>403</pcr_amplicon_size>
		<canonical_amplicon>GAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTA</canonical_amplicon>
		<polymorphic_amplicon>GAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTKTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26322</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>45706</contig_pos>
        <strand></strand>
        <context>ttacagtaaa[T/A]caaataatca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAA</left_flank>
        <right_flank>CAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGGTCATGACCGAGTTCTTTGGATTTCTAGGCCATGACCGAATTTTTCGGGTTTCTGGGCCATATTGCGTTTTTAGGTTTTCTAGGTCATGACCGAGTTTAACCAAATTTGACCTGTTTCTCAAAATTCCGATTTGTCTAAATTCTATAATAGTTTTTCTAGTTTTTCAACTTCCATTTCTTTTTCAACTGTGATTTATTTTTTAAAAATCTAATTTTGAAAAAATTAAAATTGTTCTCTAAAAACTGAAATTGTTATTGACCGATGTCTAATTCACACTTTCACACTAATTACTCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTACCTGCTTTTTTAGTATTATCATAACTTCGACCTTAATTATCTCAATTCCTGTAAATGGTATTGAATAGTTGCGAATTAGCAAAATGTGTAAAATTATAATAATCAAAGTATAATAATCATTTTATAAGTTAACATCTTTTTGATATCTTTCACAGCAACTGAGATAATCAGAGTTGAACTTTATCCATCCGTAATTTTGGGCATCTTTTCCGAATCTAACTTTTTTCTACTTTTTTCTTTTCCAATTCCAAAAAGGATTTGCTTTCTGAATCGCTTCATT</canonical>
            <polymorphic>CTAGGTCATGACCGAGTTCTTTGGATTTCTAGGCCATGACCGAATTTTTCGGGTTTCTGGGCCATATTGCGTTTTTAGGTTTTCTAGGTCATGACCGAGTTTAACCAAATTTGACCTGTTTCTCAAAATTCCGATTTGTCTAAATTCTATAATAGTTTTTCTAGTTTTTCAACTTCCATTTCTTTTTCAACTGTGATTTATTTTTTAAAAATCTAATTTTGAAAAAATTAAAATTGTTCTCTAAAAACTGAAATTGTTATTGACCGATGTCTAATTCACACTTTCACACTAATTACTCTTTTCTTTATTGTTTTCCGGAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAAWCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTACCTGCTTTTTTAGTATTATCATAACTTCGACCTTAATTATCTCAATTCCTGTAAATGGTATTGAATAGTTGCGAATTAGCAAAATGTGTAAAATTATAATAATCAAAGTATAATAATCATTTTATAAGTTAACATCTTTTTGATATCTTTCACAGCAACTGAGATAATCAGAGTTGAACTTTATCCATCCGTAATTTTGGGCATCTTTTCCGAATCTAACTTTTTTCTACTTTTTTCTTTTCCAATTCCAAAAAGGATTTGCTTTCTGAATCGCTTCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTGACCTTTTCCTGAGTC</pcr_primer_p1>
		<pcr_primer_p2>TAGTTATGGGATAAGGCAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>403</pcr_amplicon_size>
		<canonical_amplicon>GAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAATCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTA</canonical_amplicon>
		<polymorphic_amplicon>GAAGTGACCTTTTCCTGAGTCCCCCTTTAGAGTTAGGTGTTTTTCTGATCATAACTCAACTTTAACCCTAATTATCTCGGTCCCTAGGAGAGATATCAAATAGCGACCGACTGATAAAATATGTCAAATTTTATGATAATCATTTTGTTAGTCAACGTCTTTTTGATATCTGTTACAGTAAAWCAAATAATCAGATCTAAAGTGTGATCGTCCCATAACCGCCTTACTTTTTCAGTATCTCAACTTTGACCCTAATTATCGCAATTCCTGTGCAAGATATCAAAATGCGGTCAACTAATAAAGTGTGTAAAGTTTTATGTCAATTGTTTTATTCGTTAACACTTTTTTGATATAAGTTCCAGGAAGACTAATAATTAGGGAAAATTGCCTTATCCCATAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26323</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>72596</contig_pos>
        <strand>+</strand>
        <context>TACCAAATTT[C/T]AAAAAGCTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTAGGAAAATCGGAATCGATTTAGACATTAGTATTCATACCAAATTT</left_flank>
        <right_flank>AAAAAGCTAACTTTAAAGGAGGCTCGCGCTTACAACCTTCTATCTTGCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCTCTCGTTTATTATAGTTTGAGTTACGACAGCGTTACTCCCCAATTTGAGCCCTTATATCTATGTTCATGTGAAAGATATCAAAAATCTGTCAACTGATAAAATTTTGGTGATATTATCACACATATTTTATCATTGACCAATTCTCGATATCTCTAACGGGAACAGAGATAGTTGAGTTCAAAGTATAGGTATTTTTCAAGTTTCAATTAATTTTTCAGACTGTCGACATTTACTTTTTTTATGAATTGTTTTGTTTCCAGCCAGACAAGTCTGTGTAATTTTTCTGTACTTATCTAATAGTCCAGATTAGTGGATCTCTGAAAATAACGCATAGCTCAAACCATATGTTTTTAATCATAATGTAACTGCTAGTATCGGCAAGCGATGGCAATGACCGAGTAGCTGGAACTTAAATTCTAGCGCTCGTTGAAGTTATGAATCGAAAAATTAGGAAAATCGGAATCGATTTAGACATTAGTATTCATACCAAATTTTAAAAAGCTAACTTTAAAGGAGGCTCGCGCTTACAACCTTCTATCTTGCTTACGGTTAAAGCTAGAAATTTGAAACTTTACAAATAAAATATACAATTTAGTTCAAATATTTATGCCAATTTTCAAAAAGCTAGCTTCAAAAGGTCCCGAGATATGAGCTGTTAAACTTAAGGTAGTGGCGCGCGCCTCTCGCCGGCGGTCGTTGTTTACGACCGCGTAGCTCTTCTCTGGTTGAAGCTAGAAACTTCAATTTTCGCAAATGAAGTATACAAGTTTAGCTAAATGTTCTCACCGAATTTCAGCTAGCTAGTTATAATGTTTCGGGCTCTTTTCTAGTTTAGAAGTCCCAAAAAAATTTAGAGGTCCCAAAAAAATTGGAGGTCCCAAAATAAAATAGAGGTCCGTAAAAAAATTAAAGGTACCAAAAAAGTTTAGAGGTCCCAAGAAAAAATAAAGGTCCAAAATTTGAAAAACGCGCAGATGTTGGAATAATGTACCAGA</canonical>
            <polymorphic>ATTCTCTCGTTTATTATAGTTTGAGTTACGACAGCGTTACTCCCCAATTTGAGCCCTTATATCTATGTTCATGTGAAAGATATCAAAAATCTGTCAACTGATAAAATTTTGGTGATATTATCACACATATTTTATCATTGACCAATTCTCGATATCTCTAACGGGAACAGAGATAGTTGAGTTCAAAGTATAGGTATTTTTCAAGTTTCAATTAATTTTTCAGACTGTCGACATTTACTTTTTTTATGAATTGTTTTGTTTCCAGCCAGACAAGTCTGTGTAATTTTTCTGTACTTATCTAATAGTCCAGATTAGTGGATCTCTGAAAATAACGCATAGCTCAAACCATATGTTTTTAATCATAATGTAACTGCTAGTATCGGCAAGCGATGGCAATGACCGAGTAGCTGGAACTTAAATTCTAGCGCTCGTTGAAGTTATGAATCGAAAAATTAGGAAAATCGGAATCGATTTAGACATTAGTATTCATACCAAATTTYAAAAAGCTAACTTTAAAGGAGGCTCGCGCTTACAACCTTCTATCTTGCTTACGGTTAAAGCTAGAAATTTGAAACTTTACAAATAAAATATACAATTTAGTTCAAATATTTATGCCAATTTTCAAAAAGCTAGCTTCAAAAGGTCCCGAGATATGAGCTGTTAAACTTAAGGTAGTGGCGCGCGCCTCTCGCCGGCGGTCGTTGTTTACGACCGCGTAGCTCTTCTCTGGTTGAAGCTAGAAACTTCAATTTTCGCAAATGAAGTATACAAGTTTAGCTAAATGTTCTCACCGAATTTCAGCTAGCTAGTTATAATGTTTCGGGCTCTTTTCTAGTTTAGAAGTCCCAAAAAAATTTAGAGGTCCCAAAAAAATTGGAGGTCCCAAAATAAAATAGAGGTCCGTAAAAAAATTAAAGGTACCAAAAAAGTTTAGAGGTCCCAAGAAAAAATAAAGGTCCAAAATTTGAAAAACGCGCAGATGTTGGAATAATGTACCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 486 14</canonical_bands>
                <polymorphic_bands>514 486</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>245 212 144 106 88 84 59 42 14 6</canonical_bands>
                <polymorphic_bands>245 212 144 106 98 88 59 42 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGTCCAGATTAGTGGATCTCTG</pcr_primer_p1>
		<pcr_primer_p2>CGTAAGCAAGATAGAAGGTTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAGTCCAGATTAGTGGATCTCTGAAAATAACGCATAGCTCAAACCATATGTTTTTAATCATAATGTAACTGCTAGTATCGGCAAGCGATGGCAATGACCGAGTAGCTGGAACTTAAATTCTAGCGCTCGTTGAAGTTATGAATCGAAAAATTAGGAAAATCGGAATCGATTTAGACATTAGTATTCATACCAAATTTTAAAAAGCTAACTTTAAAGGAGGCTCGCGCTTACAACCTTCTATCTTGCTTACG</canonical_amplicon>
		<polymorphic_amplicon>TAGTCCAGATTAGTGGATCTCTGAAAATAACGCATAGCTCAAACCATATGTTTTTAATCATAATGTAACTGCTAGTATCGGCAAGCGATGGCAATGACCGAGTAGCTGGAACTTAAATTCTAGCGCTCGTTGAAGTTATGAATCGAAAAATTAGGAAAATCGGAATCGATTTAGACATTAGTATTCATACCAAATTTYAAAAAGCTAACTTTAAAGGAGGCTCGCGCTTACAACCTTCTATCTTGCTTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26324</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>72653</contig_pos>
        <strand>+</strand>
        <context>GCTTACGGTT[A/G]AAGCTAGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAACTTTAAAGGAGGCTCGCGCTTACAACCTTCTATCTTGCTTACGGTT</left_flank>
        <right_flank>AAGCTAGAAATTTGAAACTTTACAAATAAAATATACAATTTAGTTCAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATATCTATGTTCATGTGAAAGATATCAAAAATCTGTCAACTGATAAAATTTTGGTGATATTATCACACATATTTTATCATTGACCAATTCTCGATATCTCTAACGGGAACAGAGATAGTTGAGTTCAAAGTATAGGTATTTTTCAAGTTTCAATTAATTTTTCAGACTGTCGACATTTACTTTTTTTATGAATTGTTTTGTTTCCAGCCAGACAAGTCTGTGTAATTTTTCTGTACTTATCTAATAGTCCAGATTAGTGGATCTCTGAAAATAACGCATAGCTCAAACCATATGTTTTTAATCATAATGTAACTGCTAGTATCGGCAAGCGATGGCAATGACCGAGTAGCTGGAACTTAAATTCTAGCGCTCGTTGAAGTTATGAATCGAAAAATTAGGAAAATCGGAATCGATTTAGACATTAGTATTCATACCAAATTTTAAAAAGCTAACTTTAAAGGAGGCTCGCGCTTACAACCTTCTATCTTGCTTACGGTTAAAGCTAGAAATTTGAAACTTTACAAATAAAATATACAATTTAGTTCAAATATTTATGCCAATTTTCAAAAAGCTAGCTTCAAAAGGTCCCGAGATATGAGCTGTTAAACTTAAGGTAGTGGCGCGCGCCTCTCGCCGGCGGTCGTTGTTTACGACCGCGTAGCTCTTCTCTGGTTGAAGCTAGAAACTTCAATTTTCGCAAATGAAGTATACAAGTTTAGCTAAATGTTCTCACCGAATTTCAGCTAGCTAGTTATAATGTTTCGGGCTCTTTTCTAGTTTAGAAGTCCCAAAAAAATTTAGAGGTCCCAAAAAAATTGGAGGTCCCAAAATAAAATAGAGGTCCGTAAAAAAATTAAAGGTACCAAAAAAGTTTAGAGGTCCCAAGAAAAAATAAAGGTCCAAAATTTGAAAAACGCGCAGATGTTGGAATAATGTACCAGAATTTGGAGTTTTGAGTTTTAAGGCTCTATTGGATGATAAGTGCGGAAATGTGACTTT</canonical>
            <polymorphic>TATATCTATGTTCATGTGAAAGATATCAAAAATCTGTCAACTGATAAAATTTTGGTGATATTATCACACATATTTTATCATTGACCAATTCTCGATATCTCTAACGGGAACAGAGATAGTTGAGTTCAAAGTATAGGTATTTTTCAAGTTTCAATTAATTTTTCAGACTGTCGACATTTACTTTTTTTATGAATTGTTTTGTTTCCAGCCAGACAAGTCTGTGTAATTTTTCTGTACTTATCTAATAGTCCAGATTAGTGGATCTCTGAAAATAACGCATAGCTCAAACCATATGTTTTTAATCATAATGTAACTGCTAGTATCGGCAAGCGATGGCAATGACCGAGTAGCTGGAACTTAAATTCTAGCGCTCGTTGAAGTTATGAATCGAAAAATTAGGAAAATCGGAATCGATTTAGACATTAGTATTCATACCAAATTTTAAAAAGCTAACTTTAAAGGAGGCTCGCGCTTACAACCTTCTATCTTGCTTACGGTTRAAGCTAGAAATTTGAAACTTTACAAATAAAATATACAATTTAGTTCAAATATTTATGCCAATTTTCAAAAAGCTAGCTTCAAAAGGTCCCGAGATATGAGCTGTTAAACTTAAGGTAGTGGCGCGCGCCTCTCGCCGGCGGTCGTTGTTTACGACCGCGTAGCTCTTCTCTGGTTGAAGCTAGAAACTTCAATTTTCGCAAATGAAGTATACAAGTTTAGCTAAATGTTCTCACCGAATTTCAGCTAGCTAGTTATAATGTTTCGGGCTCTTTTCTAGTTTAGAAGTCCCAAAAAAATTTAGAGGTCCCAAAAAAATTGGAGGTCCCAAAATAAAATAGAGGTCCGTAAAAAAATTAAAGGTACCAAAAAAGTTTAGAGGTCCCAAGAAAAAATAAAGGTCCAAAATTTGAAAAACGCGCAGATGTTGGAATAATGTACCAGAATTTGGAGTTTTGAGTTTTAAGGCTCTATTGGATGATAAGTGCGGAAATGTGACTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>245 155 144 106 106 84 59 42 39 14 6</canonical_bands>
                <polymorphic_bands>245 155 148 144 106 84 59 39 14 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGAAGTTATGAATCGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCACTACCTTAAGTTTAACAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTGAAGTTATGAATCGAAAAATTAGGAAAATCGGAATCGATTTAGACATTAGTATTCATACCAAATTTTAAAAAGCTAACTTTAAAGGAGGCTCGCGCTTACAACCTTCTATCTTGCTTACGGTTAAAGCTAGAAATTTGAAACTTTACAAATAAAATATACAATTTAGTTCAAATATTTATGCCAATTTTCAAAAAGCTAGCTTCAAAAGGTCCCGAGATATGAGCTGTTAAACTTAAGGTAGTGG</canonical_amplicon>
		<polymorphic_amplicon>GTTGAAGTTATGAATCGAAAAATTAGGAAAATCGGAATCGATTTAGACATTAGTATTCATACCAAATTTTAAAAAGCTAACTTTAAAGGAGGCTCGCGCTTACAACCTTCTATCTTGCTTACGGTTRAAGCTAGAAATTTGAAACTTTACAAATAAAATATACAATTTAGTTCAAATATTTATGCCAATTTTCAAAAAGCTAGCTTCAAAAGGTCCCGAGATATGAGCTGTTAAACTTAAGGTAGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26325</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>112573</contig_pos>
        <strand>+</strand>
        <context>ATTTGGAAAT[C/T]CCAAAAATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAAT</left_flank>
        <right_flank>CCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTGGAAAGTTCCAAAATTTTGAAATTTTTCAGAAATTCCGAAATTCAGAAATTTGGAAAGTTCCTTAATTTAGGAATTCAGAATTCCTAAAATCCAGATTTTTCTCAAATTTCGAACTTCCAAATTTCTGAATTTCTTGAATTTTATGAAAATTGCTGAGATTTGGTAATTTGAACATTTCCAGAATACAGGAATTCTGATAATTCCAAAAATTGTTAAATCAAAAATATTCAAAAATTGTAAAATTTGGTTTACAAATTTCTGAAATTCAGCTTTGGAAATTTAGAAAAAATTCCATAAAATTTCGAAATTCAAGTTTTTAAAATTCAAAACTTCAAAAATTTCAGAAAATTCTGCAAAATTCAAATTAGAAAATTCCAGGATTTCCAGAAAATTTCGTAAAATTAAAAGTTTACAATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAA</canonical>
            <polymorphic>AAATTTGGAAAGTTCCAAAATTTTGAAATTTTTCAGAAATTCCGAAATTCAGAAATTTGGAAAGTTCCTTAATTTAGGAATTCAGAATTCCTAAAATCCAGATTTTTCTCAAATTTCGAACTTCCAAATTTCTGAATTTCTTGAATTTTATGAAAATTGCTGAGATTTGGTAATTTGAACATTTCCAGAATACAGGAATTCTGATAATTCCAAAAATTGTTAAATCAAAAATATTCAAAAATTGTAAAATTTGGTTTACAAATTTCTGAAATTCAGCTTTGGAAATTTAGAAAAAATTCCATAAAATTTCGAAATTCAAGTTTTTAAAATTCAAAACTTCAAAAATTTCAGAAAATTCTGCAAAATTCAAATTAGAAAATTCCAGGATTTCCAGAAAATTTCGTAAAATTAAAAGTTTACAATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATYCCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGAGAAAATTCGGGAAC</pcr_primer_p1>
		<pcr_primer_p2>TTGAGAACTTTGGTAGAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>398</pcr_amplicon_size>
		<canonical_amplicon>ATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATYCCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26326</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>112615</contig_pos>
        <strand></strand>
        <context>GAATTTTCAT[T/A]AWAAYCCAGa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCAT</left_flank>
        <right_flank>AAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAA</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAAATTCAGAAATTTGGAAAGTTCCTTAATTTAGGAATTCAGAATTCCTAAAATCCAGATTTTTCTCAAATTTCGAACTTCCAAATTTCTGAATTTCTTGAATTTTATGAAAATTGCTGAGATTTGGTAATTTGAACATTTCCAGAATACAGGAATTCTGATAATTCCAAAAATTGTTAAATCAAAAATATTCAAAAATTGTAAAATTTGGTTTACAAATTTCTGAAATTCAGCTTTGGAAATTTAGAAAAAATTCCATAAAATTTCGAAATTCAAGTTTTTAAAATTCAAAACTTCAAAAATTTCAGAAAATTCTGCAAAATTCAAATTAGAAAATTCCAGGATTTCCAGAAAATTTCGTAAAATTAAAAGTTTACAATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTT</canonical>
            <polymorphic>CGAAATTCAGAAATTTGGAAAGTTCCTTAATTTAGGAATTCAGAATTCCTAAAATCCAGATTTTTCTCAAATTTCGAACTTCCAAATTTCTGAATTTCTTGAATTTTATGAAAATTGCTGAGATTTGGTAATTTGAACATTTCCAGAATACAGGAATTCTGATAATTCCAAAAATTGTTAAATCAAAAATATTCAAAAATTGTAAAATTTGGTTTACAAATTTCTGAAATTCAGCTTTGGAAATTTAGAAAAAATTCCATAAAATTTCGAAATTCAAGTTTTTAAAATTCAAAACTTCAAAAATTTCAGAAAATTCTGCAAAATTCAAATTAGAAAATTCCAGGATTTCCAGAAAATTTCGTAAAATTAAAAGTTTACAATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATWAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>386 151 115 108 104 85 27 24</canonical_bands>
                <polymorphic_bands>386 151 139 108 104 85 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATCCAGACAGTTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAGAACTTTGGTAGAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>351</pcr_amplicon_size>
		<canonical_amplicon>GAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATWAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26327</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>112617</contig_pos>
        <strand>+</strand>
        <context>ATTTTCATWA[A/T]AAYCCAGaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTA</left_flank>
        <right_flank>AATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTCAGAAATTTGGAAAGTTCCTTAATTTAGGAATTCAGAATTCCTAAAATCCAGATTTTTCTCAAATTTCGAACTTCCAAATTTCTGAATTTCTTGAATTTTATGAAAATTGCTGAGATTTGGTAATTTGAACATTTCCAGAATACAGGAATTCTGATAATTCCAAAAATTGTTAAATCAAAAATATTCAAAAATTGTAAAATTTGGTTTACAAATTTCTGAAATTCAGCTTTGGAAATTTAGAAAAAATTCCATAAAATTTCGAAATTCAAGTTTTTAAAATTCAAAACTTCAAAAATTTCAGAAAATTCTGCAAAATTCAAATTAGAAAATTCCAGGATTTCCAGAAAATTTCGTAAAATTAAAAGTTTACAATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTT</canonical>
            <polymorphic>AAATTCAGAAATTTGGAAAGTTCCTTAATTTAGGAATTCAGAATTCCTAAAATCCAGATTTTTCTCAAATTTCGAACTTCCAAATTTCTGAATTTCTTGAATTTTATGAAAATTGCTGAGATTTGGTAATTTGAACATTTCCAGAATACAGGAATTCTGATAATTCCAAAAATTGTTAAATCAAAAATATTCAAAAATTGTAAAATTTGGTTTACAAATTTCTGAAATTCAGCTTTGGAAATTTAGAAAAAATTCCATAAAATTTCGAAATTCAAGTTTTTAAAATTCAAAACTTCAAAAATTTCAGAAAATTCTGCAAAATTCAAATTAGAAAATTCCAGGATTTCCAGAAAATTTCGTAAAATTAAAAGTTTACAATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAWAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>388 151 115 108 104 85 25 24</canonical_bands>
                <polymorphic_bands>388 151 139 108 104 85 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATCCAGACAGTTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAGAACTTTGGTAGAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>351</pcr_amplicon_size>
		<canonical_amplicon>GAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAWAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26328</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>112620</contig_pos>
        <strand></strand>
        <context>TTCATWAWAA[T/C]CCAGaaaatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAA</left_flank>
        <right_flank>CCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTG</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAGAAATTTGGAAAGTTCCTTAATTTAGGAATTCAGAATTCCTAAAATCCAGATTTTTCTCAAATTTCGAACTTCCAAATTTCTGAATTTCTTGAATTTTATGAAAATTGCTGAGATTTGGTAATTTGAACATTTCCAGAATACAGGAATTCTGATAATTCCAAAAATTGTTAAATCAAAAATATTCAAAAATTGTAAAATTTGGTTTACAAATTTCTGAAATTCAGCTTTGGAAATTTAGAAAAAATTCCATAAAATTTCGAAATTCAAGTTTTTAAAATTCAAAACTTCAAAAATTTCAGAAAATTCTGCAAAATTCAAATTAGAAAATTCCAGGATTTCCAGAAAATTTCGTAAAATTAAAAGTTTACAATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCAT</canonical>
            <polymorphic>TTCAGAAATTTGGAAAGTTCCTTAATTTAGGAATTCAGAATTCCTAAAATCCAGATTTTTCTCAAATTTCGAACTTCCAAATTTCTGAATTTCTTGAATTTTATGAAAATTGCTGAGATTTGGTAATTTGAACATTTCCAGAATACAGGAATTCTGATAATTCCAAAAATTGTTAAATCAAAAATATTCAAAAATTGTAAAATTTGGTTTACAAATTTCTGAAATTCAGCTTTGGAAATTTAGAAAAAATTCCATAAAATTTCGAAATTCAAGTTTTTAAAATTCAAAACTTCAAAAATTTCAGAAAATTCTGCAAAATTCAAATTAGAAAATTCCAGGATTTCCAGAAAATTTCGTAAAATTAAAAGTTTACAATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAAYCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>206 189 138 73 68 51 45 44 42 40 35 32 20 17</canonical_bands>
                <polymorphic_bands>206 189 138 108 68 51 45 44 42 40 32 20 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATCCAGACAGTTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAGAACTTTGGTAGAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>351</pcr_amplicon_size>
		<canonical_amplicon>GAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAAYCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26329</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>112668</contig_pos>
        <strand></strand>
        <context>agaaataaaa[T/A]tgataaaatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAA</left_flank>
        <right_flank>TGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCAGATTTTTCTCAAATTTCGAACTTCCAAATTTCTGAATTTCTTGAATTTTATGAAAATTGCTGAGATTTGGTAATTTGAACATTTCCAGAATACAGGAATTCTGATAATTCCAAAAATTGTTAAATCAAAAATATTCAAAAATTGTAAAATTTGGTTTACAAATTTCTGAAATTCAGCTTTGGAAATTTAGAAAAAATTCCATAAAATTTCGAAATTCAAGTTTTTAAAATTCAAAACTTCAAAAATTTCAGAAAATTCTGCAAAATTCAAATTAGAAAATTCCAGGATTTCCAGAAAATTTCGTAAAATTAAAAGTTTACAATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTTTAGAAAATCGGAATTT</canonical>
            <polymorphic>ATCCAGATTTTTCTCAAATTTCGAACTTCCAAATTTCTGAATTTCTTGAATTTTATGAAAATTGCTGAGATTTGGTAATTTGAACATTTCCAGAATACAGGAATTCTGATAATTCCAAAAATTGTTAAATCAAAAATATTCAAAAATTGTAAAATTTGGTTTACAAATTTCTGAAATTCAGCTTTGGAAATTTAGAAAAAATTCCATAAAATTTCGAAATTCAAGTTTTTAAAATTCAAAACTTCAAAAATTTCAGAAAATTCTGCAAAATTCAAATTAGAAAATTCCAGGATTTCCAGAAAATTTCGTAAAATTAAAAGTTTACAATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAAWTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTTTAGAAAATCGGAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>150 52 44 34 31 27 25 25 25 21 20 19 19 18 17 17 16 16 15 15 14 14 14 13 12 11 11 11 11 10 10 10 10 10 10 10 10 9 9 9 9 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 7 7 6 6 6 5 5</canonical_bands>
                <polymorphic_bands>150 52 44 34 31 27 25 25 25 23 21 20 19 19 18 17 17 16 16 15 15 14 14 13 12 11 11 11 11 10 10 10 10 10 10 10 10 9 9 9 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 7 7 6 6 6 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATCCAGACAGTTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAGAACTTTGGTAGAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>351</pcr_amplicon_size>
		<canonical_amplicon>GAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAAWTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26330</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>112731</contig_pos>
        <strand>+</strand>
        <context>tttcagaatt[A/G]aaaAAAAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATT</left_flank>
        <right_flank>AAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTGAGATTTGGTAATTTGAACATTTCCAGAATACAGGAATTCTGATAATTCCAAAAATTGTTAAATCAAAAATATTCAAAAATTGTAAAATTTGGTTTACAAATTTCTGAAATTCAGCTTTGGAAATTTAGAAAAAATTCCATAAAATTTCGAAATTCAAGTTTTTAAAATTCAAAACTTCAAAAATTTCAGAAAATTCTGCAAAATTCAAATTAGAAAATTCCAGGATTTCCAGAAAATTTCGTAAAATTAAAAGTTTACAATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTTTAGAAAATCGGAATTTTCAAAAAATTCAAAAAATCGATATTTCAGGACTGCAAATGCTTCATCGCAGTTATCCATATGC</canonical>
            <polymorphic>GCTGAGATTTGGTAATTTGAACATTTCCAGAATACAGGAATTCTGATAATTCCAAAAATTGTTAAATCAAAAATATTCAAAAATTGTAAAATTTGGTTTACAAATTTCTGAAATTCAGCTTTGGAAATTTAGAAAAAATTCCATAAAATTTCGAAATTCAAGTTTTTAAAATTCAAAACTTCAAAAATTTCAGAAAATTCTGCAAAATTCAAATTAGAAAATTCCAGGATTTCCAGAAAATTTCGTAAAATTAAAAGTTTACAATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTRAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTTTAGAAAATCGGAATTTTCAAAAAATTCAAAAAATCGATATTTCAGGACTGCAAATGCTTCATCGCAGTTATCCATATGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 115 108 104 85 62 24</canonical_bands>
                <polymorphic_bands>617 108 104 85 62 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATCCAGACAGTTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAGAACTTTGGTAGAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>351</pcr_amplicon_size>
		<canonical_amplicon>GAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTRAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26331</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>112746</contig_pos>
        <strand>+</strand>
        <context>AAAACAAAAA[A/C]TTGAATMTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAA</left_flank>
        <right_flank>TTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAACATTTCCAGAATACAGGAATTCTGATAATTCCAAAAATTGTTAAATCAAAAATATTCAAAAATTGTAAAATTTGGTTTACAAATTTCTGAAATTCAGCTTTGGAAATTTAGAAAAAATTCCATAAAATTTCGAAATTCAAGTTTTTAAAATTCAAAACTTCAAAAATTTCAGAAAATTCTGCAAAATTCAAATTAGAAAATTCCAGGATTTCCAGAAAATTTCGTAAAATTAAAAGTTTACAATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTTTAGAAAATCGGAATTTTCAAAAAATTCAAAAAATCGATATTTCAGGACTGCAAATGCTTCATCGCAGTTATCCATATGCAAAAACTAAAAGAGA</canonical>
            <polymorphic>TTTGAACATTTCCAGAATACAGGAATTCTGATAATTCCAAAAATTGTTAAATCAAAAATATTCAAAAATTGTAAAATTTGGTTTACAAATTTCTGAAATTCAGCTTTGGAAATTTAGAAAAAATTCCATAAAATTTCGAAATTCAAGTTTTTAAAATTCAAAACTTCAAAAATTTCAGAAAATTCTGCAAAATTCAAATTAGAAAATTCCAGGATTTCCAGAAAATTTCGTAAAATTAAAAGTTTACAATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAMTTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTTTAGAAAATCGGAATTTTCAAAAAATTCAAAAAATCGATATTTCAGGACTGCAAATGCTTCATCGCAGTTATCCATATGCAAAAACTAAAAGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>150 72 52 44 34 31 27 25 25 23 21 20 19 19 18 17 16 15 14 14 14 13 12 11 11 11 11 10 10 10 10 10 10 10 10 9 9 9 9 9 9 9 9 8 8 8 8 8 8 8 8 8 7 7 6 6 6 5</canonical_bands>
                <polymorphic_bands>150 72 52 44 34 31 27 25 25 23 23 21 20 19 19 17 16 15 14 14 14 13 12 11 11 11 11 10 10 10 10 10 10 10 10 9 9 9 9 9 9 9 9 8 8 8 8 8 8 8 8 8 7 7 6 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATCCAGACAGTTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAGAACTTTGGTAGAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>351</pcr_amplicon_size>
		<canonical_amplicon>GAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAMTTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26332</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>112753</contig_pos>
        <strand>+</strand>
        <context>AAAMTTGAAT[A/C]TTCACGAART</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAAT</left_flank>
        <right_flank>TTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCCAGAATACAGGAATTCTGATAATTCCAAAAATTGTTAAATCAAAAATATTCAAAAATTGTAAAATTTGGTTTACAAATTTCTGAAATTCAGCTTTGGAAATTTAGAAAAAATTCCATAAAATTTCGAAATTCAAGTTTTTAAAATTCAAAACTTCAAAAATTTCAGAAAATTCTGCAAAATTCAAATTAGAAAATTCCAGGATTTCCAGAAAATTTCGTAAAATTAAAAGTTTACAATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTTTAGAAAATCGGAATTTTCAAAAAATTCAAAAAATCGATATTTCAGGACTGCAAATGCTTCATCGCAGTTATCCATATGCAAAAACTAAAAGAGAATCTTTT</canonical>
            <polymorphic>ATTTCCAGAATACAGGAATTCTGATAATTCCAAAAATTGTTAAATCAAAAATATTCAAAAATTGTAAAATTTGGTTTACAAATTTCTGAAATTCAGCTTTGGAAATTTAGAAAAAATTCCATAAAATTTCGAAATTCAAGTTTTTAAAATTCAAAACTTCAAAAATTTCAGAAAATTCTGCAAAATTCAAATTAGAAAATTCCAGGATTTCCAGAAAATTTCGTAAAATTAAAAGTTTACAATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATMTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTTTAGAAAATCGGAATTTTCAAAAAATTCAAAAAATCGATATTTCAGGACTGCAAATGCTTCATCGCAGTTATCCATATGCAAAAACTAAAAGAGAATCTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>160 79 52 51 44 34 34 32 31 27 25 23 21 20 20 19 19 18 17 16 16 16 15 14 14 13 11 11 11 11 10 10 10 10 9 9 8 8 8 8 8 8 7 7 6</canonical_bands>
                <polymorphic_bands>160 79 52 51 44 43 34 34 31 27 25 23 21 20 20 19 19 18 17 16 16 16 15 14 14 13 11 11 11 10 10 10 10 9 9 8 8 8 8 8 8 7 7 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>150 79 52 44 34 31 27 25 25 21 20 19 19 18 17 16 16 15 14 14 14 13 12 11 11 11 11 10 10 10 10 10 10 10 10 9 9 9 9 9 9 9 9 8 8 8 8 8 8 8 8 8 7 7 6 6 6 5</canonical_bands>
                <polymorphic_bands>150 79 52 44 34 31 27 25 25 21 20 19 19 18 17 16 16 16 15 14 14 14 13 12 11 11 11 10 10 10 10 10 10 10 10 9 9 9 9 9 9 9 9 8 8 8 8 8 8 8 8 8 7 7 6 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATCCAGACAGTTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAGAACTTTGGTAGAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>351</pcr_amplicon_size>
		<canonical_amplicon>GAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATMTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26333</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>112762</contig_pos>
        <strand></strand>
        <context>TMTTCACGAA[A/G]TTTCTGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAA</left_flank>
        <right_flank>TTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATACAGGAATTCTGATAATTCCAAAAATTGTTAAATCAAAAATATTCAAAAATTGTAAAATTTGGTTTACAAATTTCTGAAATTCAGCTTTGGAAATTTAGAAAAAATTCCATAAAATTTCGAAATTCAAGTTTTTAAAATTCAAAACTTCAAAAATTTCAGAAAATTCTGCAAAATTCAAATTAGAAAATTCCAGGATTTCCAGAAAATTTCGTAAAATTAAAAGTTTACAATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTTTAGAAAATCGGAATTTTCAAAAAATTCAAAAAATCGATATTTCAGGACTGCAAATGCTTCATCGCAGTTATCCATATGCAAAAACTAAAAGAGAATCTTTTCTCGAATTT</canonical>
            <polymorphic>ATACAGGAATTCTGATAATTCCAAAAATTGTTAAATCAAAAATATTCAAAAATTGTAAAATTTGGTTTACAAATTTCTGAAATTCAGCTTTGGAAATTTAGAAAAAATTCCATAAAATTTCGAAATTCAAGTTTTTAAAATTCAAAACTTCAAAAATTTCAGAAAATTCTGCAAAATTCAAATTAGAAAATTCCAGGATTTCCAGAAAATTTCGTAAAATTAAAAGTTTACAATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAARTTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTTTAGAAAATCGGAATTTTCAAAAAATTCAAAAAATCGATATTTCAGGACTGCAAATGCTTCATCGCAGTTATCCATATGCAAAAACTAAAAGAGAATCTTTTCTCGAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>160 83 52 51 44 34 34 32 31 27 25 23 21 20 20 19 19 18 17 16 16 15 14 14 13 11 11 11 11 10 10 10 10 9 9 8 8 8 8 8 8 7 7 7 6 5</canonical_bands>
                <polymorphic_bands>160 83 52 51 44 34 34 32 31 27 25 23 22 21 20 20 19 19 18 17 16 16 15 14 14 13 11 11 10 10 10 10 9 9 8 8 8 8 8 8 7 7 7 6 5</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>150 83 52 44 34 31 27 25 25 21 20 19 19 18 17 16 15 14 14 14 13 12 11 11 11 11 10 10 10 10 10 10 10 10 9 9 9 9 9 9 9 9 8 8 8 8 8 8 8 8 8 7 7 7 6 6 6 5 5</canonical_bands>
                <polymorphic_bands>150 83 52 44 34 31 27 25 25 22 21 20 19 19 18 17 16 15 14 14 14 13 12 11 11 10 10 10 10 10 10 10 10 9 9 9 9 9 9 9 9 8 8 8 8 8 8 8 8 8 7 7 7 6 6 6 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATCCAGACAGTTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAGAACTTTGGTAGAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>351</pcr_amplicon_size>
		<canonical_amplicon>GAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAARTTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26334</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>112805</contig_pos>
        <strand>+</strand>
        <context>AGAATTTCAG[C/T]ATTTCCAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAG</left_flank>
        <right_flank>ATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCAAAAATTGTAAAATTTGGTTTACAAATTTCTGAAATTCAGCTTTGGAAATTTAGAAAAAATTCCATAAAATTTCGAAATTCAAGTTTTTAAAATTCAAAACTTCAAAAATTTCAGAAAATTCTGCAAAATTCAAATTAGAAAATTCCAGGATTTCCAGAAAATTTCGTAAAATTAAAAGTTTACAATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTTTAGAAAATCGGAATTTTCAAAAAATTCAAAAAATCGATATTTCAGGACTGCAAATGCTTCATCGCAGTTATCCATATGCAAAAACTAAAAGAGAATCTTTTCTCGAATTTTCAAATAATCAATAATCGAAAAATCAAAGAAATTCGAGATGTC</canonical>
            <polymorphic>ATTCAAAAATTGTAAAATTTGGTTTACAAATTTCTGAAATTCAGCTTTGGAAATTTAGAAAAAATTCCATAAAATTTCGAAATTCAAGTTTTTAAAATTCAAAACTTCAAAAATTTCAGAAAATTCTGCAAAATTCAAATTAGAAAATTCCAGGATTTCCAGAAAATTTCGTAAAATTAAAAGTTTACAATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGYATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTTTAGAAAATCGGAATTTTCAAAAAATTCAAAAAATCGATATTTCAGGACTGCAAATGCTTCATCGCAGTTATCCATATGCAAAAACTAAAAGAGAATCTTTTCTCGAATTTTCAAATAATCAATAATCGAAAAATCAAAGAAATTCGAGATGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATCCAGACAGTTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAGAACTTTGGTAGAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>351</pcr_amplicon_size>
		<canonical_amplicon>GAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGYATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26335</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>112828</contig_pos>
        <strand>+</strand>
        <context>AAATGTTTCA[A/G]AAAATTTCGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCA</left_flank>
        <right_flank>AAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACAAATTTCTGAAATTCAGCTTTGGAAATTTAGAAAAAATTCCATAAAATTTCGAAATTCAAGTTTTTAAAATTCAAAACTTCAAAAATTTCAGAAAATTCTGCAAAATTCAAATTAGAAAATTCCAGGATTTCCAGAAAATTTCGTAAAATTAAAAGTTTACAATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTTTAGAAAATCGGAATTTTCAAAAAATTCAAAAAATCGATATTTCAGGACTGCAAATGCTTCATCGCAGTTATCCATATGCAAAAACTAAAAGAGAATCTTTTCTCGAATTTTCAAATAATCAATAATCGAAAAATCAAAGAAATTCGAGATGTCTCTGGATTCAGCCAACGAGATTT</canonical>
            <polymorphic>TTACAAATTTCTGAAATTCAGCTTTGGAAATTTAGAAAAAATTCCATAAAATTTCGAAATTCAAGTTTTTAAAATTCAAAACTTCAAAAATTTCAGAAAATTCTGCAAAATTCAAATTAGAAAATTCCAGGATTTCCAGAAAATTTCGTAAAATTAAAAGTTTACAATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCARAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTTTAGAAAATCGGAATTTTCAAAAAATTCAAAAAATCGATATTTCAGGACTGCAAATGCTTCATCGCAGTTATCCATATGCAAAAACTAAAAGAGAATCTTTTCTCGAATTTTCAAATAATCAATAATCGAAAAATCAAAGAAATTCGAGATGTCTCTGGATTCAGCCAACGAGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>199 166 148 136 136 83 42 42 18 18 12</canonical_bands>
                <polymorphic_bands>241 166 148 136 136 83 42 18 18 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATCCAGACAGTTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAGAACTTTGGTAGAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>351</pcr_amplicon_size>
		<canonical_amplicon>GAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCARAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26336</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>112857</contig_pos>
        <strand></strand>
        <context>TTTTTGAAAA[T/C]TCAAATTYCC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAA</left_flank>
        <right_flank>TCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTAGAAAAAATTCCATAAAATTTCGAAATTCAAGTTTTTAAAATTCAAAACTTCAAAAATTTCAGAAAATTCTGCAAAATTCAAATTAGAAAATTCCAGGATTTCCAGAAAATTTCGTAAAATTAAAAGTTTACAATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTTTAGAAAATCGGAATTTTCAAAAAATTCAAAAAATCGATATTTCAGGACTGCAAATGCTTCATCGCAGTTATCCATATGCAAAAACTAAAAGAGAATCTTTTCTCGAATTTTCAAATAATCAATAATCGAAAAATCAAAGAAATTCGAGATGTCTCTGGATTCAGCCAACGAGATTTAGAATCAGAGCTACAGTATCTGGGTCTCA</canonical>
            <polymorphic>ATTTAGAAAAAATTCCATAAAATTTCGAAATTCAAGTTTTTAAAATTCAAAACTTCAAAAATTTCAGAAAATTCTGCAAAATTCAAATTAGAAAATTCCAGGATTTCCAGAAAATTTCGTAAAATTAAAAGTTTACAATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAAYTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTTTAGAAAATCGGAATTTTCAAAAAATTCAAAAAATCGATATTTCAGGACTGCAAATGCTTCATCGCAGTTATCCATATGCAAAAACTAAAAGAGAATCTTTTCTCGAATTTTCAAATAATCAATAATCGAAAAATCAAAGAAATTCGAGATGTCTCTGGATTCAGCCAACGAGATTTAGAATCAGAGCTACAGTATCTGGGTCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>160 83 65 52 44 35 34 34 32 31 27 25 23 21 20 20 19 19 18 17 16 16 15 14 11 11 11 10 10 10 10 10 9 8 8 8 8 8 8 7 7 6</canonical_bands>
                <polymorphic_bands>160 83 65 52 44 35 34 34 32 31 27 25 23 22 21 20 20 19 19 18 17 16 15 14 11 11 11 10 10 10 10 10 9 8 8 8 8 8 8 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>150 83 65 52 44 35 34 31 27 25 21 20 19 19 18 17 16 15 14 14 12 11 11 11 10 10 10 10 10 10 10 10 10 9 9 9 9 9 8 8 8 8 8 8 8 8 7 7 6 6 6 5</canonical_bands>
                <polymorphic_bands>150 83 65 52 44 35 34 31 27 25 21 20 19 19 18 17 16 16 15 14 14 12 11 11 11 10 10 10 10 10 10 10 10 9 9 9 9 9 8 8 8 8 8 8 8 8 7 7 6 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATCCAGACAGTTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>ATGTAGACGGCTTTGTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>GAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACAT</canonical_amplicon>
		<polymorphic_amplicon>GAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAAYTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26337</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>112865</contig_pos>
        <strand>+</strand>
        <context>AAYTCAAATT[C/T]CCGCCAATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATT</left_flank>
        <right_flank>CCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATTCCATAAAATTTCGAAATTCAAGTTTTTAAAATTCAAAACTTCAAAAATTTCAGAAAATTCTGCAAAATTCAAATTAGAAAATTCCAGGATTTCCAGAAAATTTCGTAAAATTAAAAGTTTACAATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTTTAGAAAATCGGAATTTTCAAAAAATTCAAAAAATCGATATTTCAGGACTGCAAATGCTTCATCGCAGTTATCCATATGCAAAAACTAAAAGAGAATCTTTTCTCGAATTTTCAAATAATCAATAATCGAAAAATCAAAGAAATTCGAGATGTCTCTGGATTCAGCCAACGAGATTTAGAATCAGAGCTACAGTATCTGGGTCTCACAACGACG</canonical>
            <polymorphic>AAAATTCCATAAAATTTCGAAATTCAAGTTTTTAAAATTCAAAACTTCAAAAATTTCAGAAAATTCTGCAAAATTCAAATTAGAAAATTCCAGGATTTCCAGAAAATTTCGTAAAATTAAAAGTTTACAATTTGAGAAAATTCGGGAACTTTGAAAAAACGACATTCAAAATTTTCGAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTYCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTTTAGAAAATCGGAATTTTCAAAAAATTCAAAAAATCGATATTTCAGGACTGCAAATGCTTCATCGCAGTTATCCATATGCAAAAACTAAAAGAGAATCTTTTCTCGAATTTTCAAATAATCAATAATCGAAAAATCAAAGAAATTCGAGATGTCTCTGGATTCAGCCAACGAGATTTAGAATCAGAGCTACAGTATCTGGGTCTCACAACGACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>160 83 73 52 44 35 34 34 32 31 27 25 23 21 20 20 19 19 18 17 16 16 15 14 11 11 11 10 10 10 10 9 8 8 8 8 8 8 7 7 6 2</canonical_bands>
                <polymorphic_bands>166 83 73 52 44 35 34 34 32 31 27 25 23 21 20 20 19 19 18 17 16 16 15 14 11 11 11 10 10 10 10 9 8 8 8 8 8 8 7 7 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATCCAGACAGTTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>ATGTAGACGGCTTTGTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>GAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACAT</canonical_amplicon>
		<polymorphic_amplicon>GAAAATCCAGACAGTTCTGAAATTTGGAAATACCAAAAATTCGAAATTTTAAAGATATTNCTAGAATTTTCATTAAAATCCAGAAAATTCAAAATTTGAAAAATTACAGAAATTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTYCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26338</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>113153</contig_pos>
        <strand>+</strand>
        <context>TGAATTTTTT[C/T]AGAAAATCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTT</left_flank>
        <right_flank>AGAAAATCGGAATTTTCAAAAAATTCAAAAAATCGATATTTCAGGACTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTTTAGAAAATCGGAATTTTCAAAAAATTCAAAAAATCGATATTTCAGGACTGCAAATGCTTCATCGCAGTTATCCATATGCAAAAACTAAAAGAGAATCTTTTCTCGAATTTTCAAATAATCAATAATCGAAAAATCAAAGAAATTCGAGATGTCTCTGGATTCAGCCAACGAGATTTAGAATCAGAGCTACAGTATCTGGGTCTCACAACGACGTTTCCGGAAATTCGAAATTTCGCGGAATTGGTGTATTCTGAAGTGGATAGAAATAAAAGGGAGCGAATTCTGAGAACGTGCGATATGTTCGACGCCGTTGAGCAGTGCCAAATTATCTGCTTTTTGAATATGTTCCCGGAAGTACGGATTATTGATTTTTTCCTTTTTTTTTGGGAGAAAAACGAAGAAAAATAGACAAAAATAGCGATTTTTAAGCCTAAAAACGTGATATAAGATTGACATTTTTCACTACTAAAAGTCGATATTTTGGACGAAAAAAATCCAGGT</canonical>
            <polymorphic>TTCCAGAAATAAAATTGATAAAATTCCGCAAATTCCAGAAAATTTCGAAATTCGGAAATTTGAAAATTTTCAGAATTAAAAAAAAACAAAAAATTGAATTTTCACGAAATTTCTGAAAAATTCCCGAGCTCAGAAACTTCTAGAATTTCAGCATTTCCAAGAAAAAATGTTTCAGAAAATTTCGAAATTTCAATTTTTGAAAATTCAAATTCCCGCCAATTTTCTACCAAAGTTCTCAATAGAGCGTATTTTCGTCTTTTTTCCAGTTCATCCGCGTCCCGATCCGTCGAACGAAACACAAAGCCGTCTACATCCAAGGACCCAGCCGAGAAATACTGTACATTCTAATCCAAGATGCATTTTTTGAAATTCTGAAATTTCTTATCCATGGAGCGAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTTYAGAAAATCGGAATTTTCAAAAAATTCAAAAAATCGATATTTCAGGACTGCAAATGCTTCATCGCAGTTATCCATATGCAAAAACTAAAAGAGAATCTTTTCTCGAATTTTCAAATAATCAATAATCGAAAAATCAAAGAAATTCGAGATGTCTCTGGATTCAGCCAACGAGATTTAGAATCAGAGCTACAGTATCTGGGTCTCACAACGACGTTTCCGGAAATTCGAAATTTCGCGGAATTGGTGTATTCTGAAGTGGATAGAAATAAAAGGGAGCGAATTCTGAGAACGTGCGATATGTTCGACGCCGTTGAGCAGTGCCAAATTATCTGCTTTTTGAATATGTTCCCGGAAGTACGGATTATTGATTTTTTCCTTTTTTTTTGGGAGAAAAACGAAGAAAAATAGACAAAAATAGCGATTTTTAAGCCTAAAAACGTGATATAAGATTGACATTTTTCACTACTAAAAGTCGATATTTTGGACGAAAAAAATCCAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTTGTTCCAAAAGTGTCA</pcr_primer_p1>
		<pcr_primer_p2>GAATTTCTTTGATTTTTCGATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTTTAGAAAATCGGAATTTTCAAAAAATTCAAAAAATCGATATTTCAGGACTGCAAATGCTTCATCGCAGTTATCCATATGCAAAAACTAAAAGAGAATCTTTTCTCGAATTTTCAAATAATCAATAATCGAAAAATCAAAGAAATTC</canonical_amplicon>
		<polymorphic_amplicon>GAAGTTGTTCCAAAAGTGTCACAAAAAAGAGGAAATTTTGAAATTGCTCACCGAATTTTTTCAAGTTTTTCATAGTGATTTTGTTAGTTTTTTTTTGAATTTTTTYAGAAAATCGGAATTTTCAAAAAATTCAAAAAATCGATATTTCAGGACTGCAAATGCTTCATCGCAGTTATCCATATGCAAAAACTAAAAGAGAATCTTTTCTCGAATTTTCAAATAATCAATAATCGAAAAATCAAAGAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26339</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>116365</contig_pos>
        <strand>+</strand>
        <context>GRCTTTTTTT[A/G]AGAACTCGCC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGAAATTTTATAGATTTTGAATCAATTTTTTGAATTTTCGGCTTTTTTT</left_flank>
        <right_flank>AGAACTCGCCAACCTTCTACTATAGCTTGAAGGATAGCGATAAATACATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAAAATGCTGCATTTTTTCCAAAAAAATATGAAATTGTTTGAATGTTTTTTCACAAAAAATTGAAAAATACTCAAAATTTTCACATATTTTTTGAAAAAAACCCGAAATTTTGGAATTTTTTTCCAAAAAAAATCTGAAAGTTTTGAATTTTTTCGAAAAAAAACTTGGAAAAAAAATCTGAAATTTTGCATTTTTTCCATGAAAATCTGAAAATTTAAAATTTTTTCCGAAAAAAAAAGAAAAAAATCGCATTTTTCGAATTTTTTCTAAAAAAATCTGAAATTGTCTAATTTTTGAAAATCTGCGTTTTTGAAATCTGGAAAATACAGAATTTTTTTACTTTTTTTCCCAATAAAAACTGGAAATCTTCAGGTTTTCTTTAGGAAAAATAATGGAAAAAAGCGGTAAAAATTTTAAGTTTTGACTTTTTTTTTTTGAAAATTTCATAGAAATTTTATAGATTTTGAATCAATTTTTTGAATTTTCGGCTTTTTTTCAGAACTCGCCAACCTTCTACTATAGCTTGAAGGATAGCGATAAATACATTGCCAAATCGGATCTTTTTGTGATTCTTCAGAATATCATGTTTAATATTTCGGACACCTCTGATTTCTGTTTGCTTTCAATTTTTATTGGTCATCTCAAGCTCCAAGAGCAACGAATTGGCTCTAATTTCGAGTTTGTCAAATGCGATGAATCGATTTTAGAGGAATTTTACAACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAATTTTACTGTTTATTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCTTTCATTGAGAAAAACGGCATCGAAAAATCAAAGTGGGAATCGGTGGCCAGGTGTGAGTTTTCTTGGCCAACTGCCGGTAAAAGCGTGCGAAATTCGAATTTTTATTGATTTTCAGTGT</canonical>
            <polymorphic>CTGAAAATGCTGCATTTTTTCCAAAAAAATATGAAATTGTTTGAATGTTTTTTCACAAAAAATTGAAAAATACTCAAAATTTTCACATATTTTTTGAAAAAAACCCGAAATTTTGGAATTTTTTTCCAAAAAAAATCTGAAAGTTTTGAATTTTTTCGAAAAAAAACTTGGAAAAAAAATCTGAAATTTTGCATTTTTTCCATGAAAATCTGAAAATTTAAAATTTTTTCCGAAAAAAAAAGAAAAAAATCGCATTTTTCGAATTTTTTCTAAAAAAATCTGAAATTGTCTAATTTTTGAAAATCTGCGTTTTTGAAATCTGGAAAATACAGAATTTTTTTACTTTTTTTCCCAATAAAAACTGGAAATCTTCAGGTTTTCTTTAGGAAAAATAATGGAAAAAAGCGGTAAAAATTTTAAGTTTTGACTTTTTTTTTTTGAAAATTTCATAGAAATTTTATAGATTTTGAATCAATTTTTTGAATTTTCGGCTTTTTTTRAGAACTCGCCAACCTTCTACTATAGCTTGAAGGATAGCGATAAATACATTGCCAAATCGGATCTTTTTGTGATTCTTCAGAATATCATGTTTAATATTTCGGACACCTCTGATTTCTGTTTGCTTTCAATTTTTATTGGTCATCTCAAGCTCCAAGAGCAACGAATTGGCTCTAATTTCGAGTTTGTCAAATGCGATGAATCGATTTTAGAGGAATTTTACAACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAATTTTACTGTTTATTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCTTTCATTGAGAAAAACGGCATCGAAAAATCAAAGTGGGAATCGGTGGCCAGGTGTGAGTTTTCTTGGCCAACTGCCGGTAAAAGCGTGCGAAATTCGAATTTTTATTGATTTTCAGTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>390 220 138 58 50 44 29 22 20 20 9</canonical_bands>
                <polymorphic_bands>390 278 138 50 44 29 22 20 20 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTAGGAAAAATAATGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAAAGCAAACAGAAATCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTTAGGAAAAATAATGGAAAAAAGCGGTAAAAATTTTAAGTTTTGACTTTTTTTTTTTGAAAATTTCATAGAAATTTTATAGATTTTGAATCAATTTTTTGAATTTTCGGCTTTTTTTCAGAACTCGCCAACCTTCTACTATAGCTTGAAGGATAGCGATAAATACATTGCCAAATCGGATCTTTTTGTGATTCTTCAGAATATCATGTTTAATATTTCGGACACCTCTGATTTCTGTTTGCTTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTTAGGAAAAATAATGGAAAAAAGCGGTAAAAATTTTAAGTTTTGACTTTTTTTTTTTGAAAATTTCATAGAAATTTTATAGATTTTGAATCAATTTTTTGAATTTTCGGCTTTTTTTRAGAACTCGCCAACCTTCTACTATAGCTTGAAGGATAGCGATAAATACATTGCCAAATCGGATCTTTTTGTGATTCTTCAGAATATCATGTTTAATATTTCGGACACCTCTGATTTCTGTTTGCTTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26340</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>116638</contig_pos>
        <strand>+</strand>
        <context>ATTTTACTGY[C/T]TWWTAATATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAATTTTACTGT</left_flank>
        <right_flank>TATTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATCTGAAATTGTCTAATTTTTGAAAATCTGCGTTTTTGAAATCTGGAAAATACAGAATTTTTTTACTTTTTTTCCCAATAAAAACTGGAAATCTTCAGGTTTTCTTTAGGAAAAATAATGGAAAAAAGCGGTAAAAATTTTAAGTTTTGACTTTTTTTTTTTGAAAATTTCATAGAAATTTTATAGATTTTGAATCAATTTTTTGAATTTTCGGCTTTTTTTCAGAACTCGCCAACCTTCTACTATAGCTTGAAGGATAGCGATAAATACATTGCCAAATCGGATCTTTTTGTGATTCTTCAGAATATCATGTTTAATATTTCGGACACCTCTGATTTCTGTTTGCTTTCAATTTTTATTGGTCATCTCAAGCTCCAAGAGCAACGAATTGGCTCTAATTTCGAGTTTGTCAAATGCGATGAATCGATTTTAGAGGAATTTTACAACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAATTTTACTGTTTATTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCTTTCATTGAGAAAAACGGCATCGAAAAATCAAAGTGGGAATCGGTGGCCAGGTGTGAGTTTTCTTGGCCAACTGCCGGTAAAAGCGTGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTTTCTGATTTTTGNNNNNNNNNNTCAATTATTTTTCGAAAGAAAACCTGAAGATTTCCAGTTTTTATTGGAAAAAAAGTAAAAAAATTCTGTATTTTCCAGATTTCAAAAACGCAGATTTTCAAAAATTAGACAATTTCAGATTTTTTTAGAAAAAATTCGAAAAATGCGATTTTTTTCTTTTTTTTTCGGAAAAAATTTTAAATTTTCAGATTTTCATGGAAAAAATGCAAAATTTCAGATTTTTTTTCCAAGTTTTTTTTCGAAAAAAT</canonical>
            <polymorphic>AAAAATCTGAAATTGTCTAATTTTTGAAAATCTGCGTTTTTGAAATCTGGAAAATACAGAATTTTTTTACTTTTTTTCCCAATAAAAACTGGAAATCTTCAGGTTTTCTTTAGGAAAAATAATGGAAAAAAGCGGTAAAAATTTTAAGTTTTGACTTTTTTTTTTTGAAAATTTCATAGAAATTTTATAGATTTTGAATCAATTTTTTGAATTTTCGGCTTTTTTTCAGAACTCGCCAACCTTCTACTATAGCTTGAAGGATAGCGATAAATACATTGCCAAATCGGATCTTTTTGTGATTCTTCAGAATATCATGTTTAATATTTCGGACACCTCTGATTTCTGTTTGCTTTCAATTTTTATTGGTCATCTCAAGCTCCAAGAGCAACGAATTGGCTCTAATTTCGAGTTTGTCAAATGCGATGAATCGATTTTAGAGGAATTTTACAACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAATTTTACTGTYTATTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCTTTCATTGAGAAAAACGGCATCGAAAAATCAAAGTGGGAATCGGTGGCCAGGTGTGAGTTTTCTTGGCCAACTGCCGGTAAAAGCGTGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTTTCTGATTTTTGNNNNNNNNNNTCAATTATTTTTCGAAAGAAAACCTGAAGATTTCCAGTTTTTATTGGAAAAAAAGTAAAAAAATTCTGTATTTTCCAGATTTCAAAAACGCAGATTTTCAAAAATTAGACAATTTCAGATTTTTTTAGAAAAAATTCGAAAAATGCGATTTTTTTCTTTTTTTTTCGGAAAAAATTTTAAATTTTCAGATTTTCATGGAAAAAATGCAAAATTTCAGATTTTTTTTCCAAGTTTTTTTTCGAAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGAGGAATTTTACAACTCAATG</pcr_primer_p1>
		<pcr_primer_p2>GGAAATCTTCAGGTTTTCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>354</pcr_amplicon_size>
		<canonical_amplicon>TTAGAGGAATTTTACAACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAATTTTACTGTTTATTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCTTTCATTGAGAAAAACGGCATCGAAAAATCAAAGTGGGAATCGGTGGCCAGGTGTGAGTTTTCTTGGCCAACTGCCGGTAAAAGCGTGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTTTCTGATTTTTGNNNNNNNNNNTCAATTATTTTTCGAAAGAAAACCTGAAGATTTCC</canonical_amplicon>
		<polymorphic_amplicon>TTAGAGGAATTTTACAACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAATTTTACTGTYTATTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCTTTCATTGAGAAAAACGGCATCGAAAAATCAAAGTGGGAATCGGTGGCCAGGTGTGAGTTTTCTTGGCCAACTGCCGGTAAAAGCGTGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTTTCTGATTTTTGNNNNNNNNNNTCAATTATTTTTCGAAAGAAAACCTGAAGATTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26341</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>116641</contig_pos>
        <strand>+</strand>
        <context>TTACTGYYTW[A/T]TAATATTTTt</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAATTTTACTGTTTA</left_flank>
        <right_flank>TAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCTGAAATTGTCTAATTTTTGAAAATCTGCGTTTTTGAAATCTGGAAAATACAGAATTTTTTTACTTTTTTTCCCAATAAAAACTGGAAATCTTCAGGTTTTCTTTAGGAAAAATAATGGAAAAAAGCGGTAAAAATTTTAAGTTTTGACTTTTTTTTTTTGAAAATTTCATAGAAATTTTATAGATTTTGAATCAATTTTTTGAATTTTCGGCTTTTTTTCAGAACTCGCCAACCTTCTACTATAGCTTGAAGGATAGCGATAAATACATTGCCAAATCGGATCTTTTTGTGATTCTTCAGAATATCATGTTTAATATTTCGGACACCTCTGATTTCTGTTTGCTTTCAATTTTTATTGGTCATCTCAAGCTCCAAGAGCAACGAATTGGCTCTAATTTCGAGTTTGTCAAATGCGATGAATCGATTTTAGAGGAATTTTACAACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAATTTTACTGTTTATTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCTTTCATTGAGAAAAACGGCATCGAAAAATCAAAGTGGGAATCGGTGGCCAGGTGTGAGTTTTCTTGGCCAACTGCCGGTAAAAGCGTGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTTTCTGATTTTTGNNNNNNNNNNTCAATTATTTTTCGAAAGAAAACCTGAAGATTTCCAGTTTTTATTGGAAAAAAAGTAAAAAAATTCTGTATTTTCCAGATTTCAAAAACGCAGATTTTCAAAAATTAGACAATTTCAGATTTTTTTAGAAAAAATTCGAAAAATGCGATTTTTTTCTTTTTTTTTCGGAAAAAATTTTAAATTTTCAGATTTTCATGGAAAAAATGCAAAATTTCAGATTTTTTTTCCAAGTTTTTTTTCGAAAAAATTCA</canonical>
            <polymorphic>AATCTGAAATTGTCTAATTTTTGAAAATCTGCGTTTTTGAAATCTGGAAAATACAGAATTTTTTTACTTTTTTTCCCAATAAAAACTGGAAATCTTCAGGTTTTCTTTAGGAAAAATAATGGAAAAAAGCGGTAAAAATTTTAAGTTTTGACTTTTTTTTTTTGAAAATTTCATAGAAATTTTATAGATTTTGAATCAATTTTTTGAATTTTCGGCTTTTTTTCAGAACTCGCCAACCTTCTACTATAGCTTGAAGGATAGCGATAAATACATTGCCAAATCGGATCTTTTTGTGATTCTTCAGAATATCATGTTTAATATTTCGGACACCTCTGATTTCTGTTTGCTTTCAATTTTTATTGGTCATCTCAAGCTCCAAGAGCAACGAATTGGCTCTAATTTCGAGTTTGTCAAATGCGATGAATCGATTTTAGAGGAATTTTACAACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAATTTTACTGTTTAWTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCTTTCATTGAGAAAAACGGCATCGAAAAATCAAAGTGGGAATCGGTGGCCAGGTGTGAGTTTTCTTGGCCAACTGCCGGTAAAAGCGTGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTTTCTGATTTTTGNNNNNNNNNNTCAATTATTTTTCGAAAGAAAACCTGAAGATTTCCAGTTTTTATTGGAAAAAAAGTAAAAAAATTCTGTATTTTCCAGATTTCAAAAACGCAGATTTTCAAAAATTAGACAATTTCAGATTTTTTTAGAAAAAATTCGAAAAATGCGATTTTTTTCTTTTTTTTTCGGAAAAAATTTTAAATTTTCAGATTTTCATGGAAAAAATGCAAAATTTCAGATTTTTTTTCCAAGTTTTTTTTCGAAAAAATTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>417 185 174 141 74 9</canonical_bands>
                <polymorphic_bands>417 194 174 141 74</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGAGGAATTTTACAACTCAATG</pcr_primer_p1>
		<pcr_primer_p2>GGAAATCTTCAGGTTTTCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>354</pcr_amplicon_size>
		<canonical_amplicon>TTAGAGGAATTTTACAACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAATTTTACTGTTTATTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCTTTCATTGAGAAAAACGGCATCGAAAAATCAAAGTGGGAATCGGTGGCCAGGTGTGAGTTTTCTTGGCCAACTGCCGGTAAAAGCGTGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTTTCTGATTTTTGNNNNNNNNNNTCAATTATTTTTCGAAAGAAAACCTGAAGATTTCC</canonical_amplicon>
		<polymorphic_amplicon>TTAGAGGAATTTTACAACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAATTTTACTGTTTAWTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCTTTCATTGAGAAAAACGGCATCGAAAAATCAAAGTGGGAATCGGTGGCCAGGTGTGAGTTTTCTTGGCCAACTGCCGGTAAAAGCGTGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTTTCTGATTTTTGNNNNNNNNNNTCAATTATTTTTCGAAAGAAAACCTGAAGATTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26342</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>116715</contig_pos>
        <strand></strand>
        <context>gtagattgac[A/T]taaaaataaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTGGAAATTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGAC</left_flank>
        <right_flank>TAAAAATAAAGAAAAAATTCAAAAAAAATTCTTTCATTGAGAAAAACGGC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCAATAAAAACTGGAAATCTTCAGGTTTTCTTTAGGAAAAATAATGGAAAAAAGCGGTAAAAATTTTAAGTTTTGACTTTTTTTTTTTGAAAATTTCATAGAAATTTTATAGATTTTGAATCAATTTTTTGAATTTTCGGCTTTTTTTCAGAACTCGCCAACCTTCTACTATAGCTTGAAGGATAGCGATAAATACATTGCCAAATCGGATCTTTTTGTGATTCTTCAGAATATCATGTTTAATATTTCGGACACCTCTGATTTCTGTTTGCTTTCAATTTTTATTGGTCATCTCAAGCTCCAAGAGCAACGAATTGGCTCTAATTTCGAGTTTGTCAAATGCGATGAATCGATTTTAGAGGAATTTTACAACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAATTTTACTGTTTATTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCTTTCATTGAGAAAAACGGCATCGAAAAATCAAAGTGGGAATCGGTGGCCAGGTGTGAGTTTTCTTGGCCAACTGCCGGTAAAAGCGTGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTTTCTGATTTTTGNNNNNNNNNNTCAATTATTTTTCGAAAGAAAACCTGAAGATTTCCAGTTTTTATTGGAAAAAAAGTAAAAAAATTCTGTATTTTCCAGATTTCAAAAACGCAGATTTTCAAAAATTAGACAATTTCAGATTTTTTTAGAAAAAATTCGAAAAATGCGATTTTTTTCTTTTTTTTTCGGAAAAAATTTTAAATTTTCAGATTTTCATGGAAAAAATGCAAAATTTCAGATTTTTTTTCCAAGTTTTTTTTCGAAAAAATTCAAAACTTTCAGATTTTTTTTGGAAAAAAATTCCAAAATTTCGGGTTTTTTTCAACCAACATGACATTTTTGCACG</canonical>
            <polymorphic>CCCAATAAAAACTGGAAATCTTCAGGTTTTCTTTAGGAAAAATAATGGAAAAAAGCGGTAAAAATTTTAAGTTTTGACTTTTTTTTTTTGAAAATTTCATAGAAATTTTATAGATTTTGAATCAATTTTTTGAATTTTCGGCTTTTTTTCAGAACTCGCCAACCTTCTACTATAGCTTGAAGGATAGCGATAAATACATTGCCAAATCGGATCTTTTTGTGATTCTTCAGAATATCATGTTTAATATTTCGGACACCTCTGATTTCTGTTTGCTTTCAATTTTTATTGGTCATCTCAAGCTCCAAGAGCAACGAATTGGCTCTAATTTCGAGTTTGTCAAATGCGATGAATCGATTTTAGAGGAATTTTACAACTCAATGCTTCGAATTTGAACAGGCACAAAATTACTGTAATTTTACTGTTTATTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACWTAAAAATAAAGAAAAAATTCAAAAAAAATTCTTTCATTGAGAAAAACGGCATCGAAAAATCAAAGTGGGAATCGGTGGCCAGGTGTGAGTTTTCTTGGCCAACTGCCGGTAAAAGCGTGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTTTCTGATTTTTGNNNNNNNNNNTCAATTATTTTTCGAAAGAAAACCTGAAGATTTCCAGTTTTTATTGGAAAAAAAGTAAAAAAATTCTGTATTTTCCAGATTTCAAAAACGCAGATTTTCAAAAATTAGACAATTTCAGATTTTTTTAGAAAAAATTCGAAAAATGCGATTTTTTTCTTTTTTTTTCGGAAAAAATTTTAAATTTTCAGATTTTCATGGAAAAAATGCAAAATTTCAGATTTTTTTTCCAAGTTTTTTTTCGAAAAAATTCAAAACTTTCAGATTTTTTTTGGAAAAAAATTCCAAAATTTCGGGTTTTTTTCAACCAACATGACATTTTTGCACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAACAGGCACAAAATTACT</pcr_primer_p1>
		<pcr_primer_p2>GGAAATCTTCAGGTTTTCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>322</pcr_amplicon_size>
		<canonical_amplicon>TTGAACAGGCACAAAATTACTGTAATTTTACTGTTTATTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCTTTCATTGAGAAAAACGGCATCGAAAAATCAAAGTGGGAATCGGTGGCCAGGTGTGAGTTTTCTTGGCCAACTGCCGGTAAAAGCGTGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTTTCTGATTTTTGNNNNNNNNNNTCAATTATTTTTCGAAAGAAAACCTGAAGATTTCC</canonical_amplicon>
		<polymorphic_amplicon>TTGAACAGGCACAAAATTACTGTAATTTTACTGTTTATTAATATTTTTAAAGGTGGTGTACGGTGGAAATTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACWTAAAAATAAAGAAAAAATTCAAAAAAAATTCTTTCATTGAGAAAAACGGCATCGAAAAATCAAAGTGGGAATCGGTGGCCAGGTGTGAGTTTTCTTGGCCAACTGCCGGTAAAAGCGTGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTTTCTGATTTTTGNNNNNNNNNNTCAATTATTTTTCGAAAGAAAACCTGAAGATTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26343</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>121067</contig_pos>
        <strand>+</strand>
        <context>aggagagcgc[A/G]gagaaagaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAATTGAAGAAACGGGAGAAGAAGGAGAGAAAGAAGGAGAGGAGAGCGC</left_flank>
        <right_flank>GAGAAAGAAAGAAGAGAAATTGAAAATTTCTGCGTTGAAAAATGAAGGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAAAAATCTTGGATTTCGGAAAATTATTTTGAAAAAATTTCGAAAATTTTCCAATTCGAAAACTTTAAATTCAAAAAAAATTTATACATTTTTGACGATTTCAAAATATCGATTTTTAGACCTTTCGAGGTGAAAAATTCATAAATTACAAAAAAAAAGCGCCAGCAGCACGCGAATCGCGCCAATCAACATTCCCTTTGCGCATAACAATAAATTTCAGCTCAAAATCTTCGTTCACCAACAAAAAGGGTGTCATAGAGTGCTGAGCTACACCTGTGACTACTGTGATGGATTGCCGAGAATTCCAGAAAAGACACAAATGACAATTGGGGGATTCTTTAAAGCGATGACGTCTATTTCCAAGGTTTTGGAGATTCTTTCCACTCATAAGAAGAACCAGAAGGCGTCGGAGGAGAAGAAGGCGACTTTAGCGATTTTAGAAGATGTGGAATTGAAGAAACGGGAGAAGAAGGAGAGAAAGAAGGAGAGGAGAGCGCAGAGAAAGAAAGAAGAGAAATTGAAAATTTCTGCGTTGAAAAATGAAGGTTCAGAAGCGGAAAAGACGTCAGAAGACACCCAGAAGACGTCAGAAACCATTATCGATGAGCAACCAAAAAATGAAGATTCAGAATTCGAGAAGAGCTACAAAAATCTCAAAAATGATATTCAAAAAATTCTGAAAGCCTCTTCACTACTCGAGAACATTCCAGGGACTCCTCCAGGAGATTCTCCAGGAGATCCAGAACCTACAGTACCCCAAAAGGAGTCGAAAAACTGTGAAAACTGTGAAAAGTAAACGGAAATTTCTGAAAAAATCGATTTTTCAAAATTTTCAGACAACTAGCTGATCTACAAAAAATCGCCAAAGAAAACGAGGAGCTAAAAGCTGAAATTTGAATTTTAAGCGCCCGAAAATCTCAAAAATCGGCTAAAAATTGGCAAGCTGAAAAGCAGGGAATGCAGCTGAGAATTCAAGAATTCCAGGCGGAAAACGATGA</canonical>
            <polymorphic>CTCAAAAATCTTGGATTTCGGAAAATTATTTTGAAAAAATTTCGAAAATTTTCCAATTCGAAAACTTTAAATTCAAAAAAAATTTATACATTTTTGACGATTTCAAAATATCGATTTTTAGACCTTTCGAGGTGAAAAATTCATAAATTACAAAAAAAAAGCGCCAGCAGCACGCGAATCGCGCCAATCAACATTCCCTTTGCGCATAACAATAAATTTCAGCTCAAAATCTTCGTTCACCAACAAAAAGGGTGTCATAGAGTGCTGAGCTACACCTGTGACTACTGTGATGGATTGCCGAGAATTCCAGAAAAGACACAAATGACAATTGGGGGATTCTTTAAAGCGATGACGTCTATTTCCAAGGTTTTGGAGATTCTTTCCACTCATAAGAAGAACCAGAAGGCGTCGGAGGAGAAGAAGGCGACTTTAGCGATTTTAGAAGATGTGGAATTGAAGAAACGGGAGAAGAAGGAGAGAAAGAAGGAGAGGAGAGCGCRGAGAAAGAAAGAAGAGAAATTGAAAATTTCTGCGTTGAAAAATGAAGGTTCAGAAGCGGAAAAGACGTCAGAAGACACCCAGAAGACGTCAGAAACCATTATCGATGAGCAACCAAAAAATGAAGATTCAGAATTCGAGAAGAGCTACAAAAATCTCAAAAATGATATTCAAAAAATTCTGAAAGCCTCTTCACTACTCGAGAACATTCCAGGGACTCCTCCAGGAGATTCTCCAGGAGATCCAGAACCTACAGTACCCCAAAAGGAGTCGAAAAACTGTGAAAACTGTGAAAAGTAAACGGAAATTTCTGAAAAAATCGATTTTTCAAAATTTTCAGACAACTAGCTGATCTACAAAAAATCGCCAAAGAAAACGAGGAGCTAAAAGCTGAAATTTGAATTTTAAGCGCCCGAAAATCTCAAAAATCGGCTAAAAATTGGCAAGCTGAAAAGCAGGGAATGCAGCTGAGAATTCAAGAATTCCAGGCGGAAAACGATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGTCTATTTCCAAGGTTTTG</pcr_primer_p1>
		<pcr_primer_p2>GATAATGGTTTCTGACGTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACGTCTATTTCCAAGGTTTTGGAGATTCTTTCCACTCATAAGAAGAACCAGAAGGCGTCGGAGGAGAAGAAGGCGACTTTAGCGATTTTAGAAGATGTGGAATTGAAGAAACGGGAGAAGAAGGAGAGAAAGAAGGAGAGGAGAGCGCAGAGAAAGAAAGAAGAGAAATTGAAAATTTCTGCGTTGAAAAATGAAGGTTCAGAAGCGGAAAAGACGTCAGAAGACACCCAGAAGACGTCAGAAACCATTATC</canonical_amplicon>
		<polymorphic_amplicon>ACGTCTATTTCCAAGGTTTTGGAGATTCTTTCCACTCATAAGAAGAACCAGAAGGCGTCGGAGGAGAAGAAGGCGACTTTAGCGATTTTAGAAGATGTGGAATTGAAGAAACGGGAGAAGAAGGAGAGAAAGAAGGAGAGGAGAGCGCRGAGAAAGAAAGAAGAGAAATTGAAAATTTCTGCGTTGAAAAATGAAGGTTCAGAAGCGGAAAAGACGTCAGAAGACACCCAGAAGACGTCAGAAACCATTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26344</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>135111</contig_pos>
        <strand>+</strand>
        <context>CTGCAGCACA[A/T]WCCTCGCATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAATTGATAACTTTTGATTTTCTTGAGTTTCTCGAGTTTCTGCAGCACA</left_flank>
        <right_flank>ACCTCGCATTTCAATCCATAAACTCTGTGACATCCTTTCTGGTTGTGTAC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTCCAGAAGCTTTGTGGTTTCAGAACTTCGGGAGGTCCCCATTGCATGCTGGACACTGTTGATGCTCTTTGAGCCAGTCGATTGCACACTGAAATATTTTAATTTTTCAAAAAGTTGATAGATCAATGAGAACCTTCGAATGGAATCTTCTTTTGCACAATGGACATCTGATGATCTGATCTTTTTCAGATTCAATTGATTTCTCGCAAATGAGGCATTGGATTTTCAGCTGAGATGTGCAAGCGGTACTGTAGTTTCTATCGTCAATCGATAACTTGGAATTTGCCAATTTATCGGTCAACTGCTTCATTTTCACCTCATTCGTCTCGTTCTTCACAGACAATCTCAAATTTTTCTGTTGTAATTCTTGAATTTCCAGCGATTTTTGCTGATTTTCTTCGAGAATTTTCTGATGGGCGATTTTCAAATCGGCCAGTTCTTTCTCCAGAATTGATAACTTTTGATTTTCTTGAGTTTCTCGAGTTTCTGCAGCACATACCTCGCATTTCAATCCATAAACTCTGTGACATCCTTTCTGGTTGTGTACGAACCTTTTCAGCTGAAAAACAAAATTCTATCTACGTCTCAATAGAGCGCACTTACTTCTGGAAGTCTTTCGAGTACGCAATTCAATTGGCAGTGCTCAACAGCATCAAACAAATCACAAGTTCTGAGGACCTTCTCCTTTTTGCGTTTGTCCACTTCGACATATACAGTTTCTGCGTAATCCTGAATCTCGGGAAAAGTCGTGGTGAGACCCAAATGAGCCAATTCGTTCTTCAGATTCTGAAGAGTGAATCCGTCGGATTTCGCATTTCTGATGTTTTTGGCAGAATCGTTTCTCGAACTACTTATGAAACTGCTGAACCTCTCTTCGTCACAACGGAGAAAGTAAAGTGTCGACTGGAAAAAAAGGTATTTTGCTATCCTCAATGACTATTTTCATTACACAATCCAATTCGAAAACGTTGTTTAAAACGGTGAAGACATCGTGCAC</canonical>
            <polymorphic>GAATTCCAGAAGCTTTGTGGTTTCAGAACTTCGGGAGGTCCCCATTGCATGCTGGACACTGTTGATGCTCTTTGAGCCAGTCGATTGCACACTGAAATATTTTAATTTTTCAAAAAGTTGATAGATCAATGAGAACCTTCGAATGGAATCTTCTTTTGCACAATGGACATCTGATGATCTGATCTTTTTCAGATTCAATTGATTTCTCGCAAATGAGGCATTGGATTTTCAGCTGAGATGTGCAAGCGGTACTGTAGTTTCTATCGTCAATCGATAACTTGGAATTTGCCAATTTATCGGTCAACTGCTTCATTTTCACCTCATTCGTCTCGTTCTTCACAGACAATCTCAAATTTTTCTGTTGTAATTCTTGAATTTCCAGCGATTTTTGCTGATTTTCTTCGAGAATTTTCTGATGGGCGATTTTCAAATCGGCCAGTTCTTTCTCCAGAATTGATAACTTTTGATTTTCTTGAGTTTCTCGAGTTTCTGCAGCACAWACCTCGCATTTCAATCCATAAACTCTGTGACATCCTTTCTGGTTGTGTACGAACCTTTTCAGCTGAAAAACAAAATTCTATCTACGTCTCAATAGAGCGCACTTACTTCTGGAAGTCTTTCGAGTACGCAATTCAATTGGCAGTGCTCAACAGCATCAAACAAATCACAAGTTCTGAGGACCTTCTCCTTTTTGCGTTTGTCCACTTCGACATATACAGTTTCTGCGTAATCCTGAATCTCGGGAAAAGTCGTGGTGAGACCCAAATGAGCCAATTCGTTCTTCAGATTCTGAAGAGTGAATCCGTCGGATTTCGCATTTCTGATGTTTTTGGCAGAATCGTTTCTCGAACTACTTATGAAACTGCTGAACCTCTCTTCGTCACAACGGAGAAAGTAAAGTGTCGACTGGAAAAAAAGGTATTTTGCTATCCTCAATGACTATTTTCATTACACAATCCAATTCGAAAACGTTGTTTAAAACGGTGAAGACATCGTGCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGACAATCTCAAATTTTTCTGT</pcr_primer_p1>
		<pcr_primer_p2>ACGTAGATAGAATTTTGTTTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGACAATCTCAAATTTTTCTGTTGTAATTCTTGAATTTCCAGCGATTTTTGCTGATTTTCTTCGAGAATTTTCTGATGGGCGATTTTCAAATCGGCCAGTTCTTTCTCCAGAATTGATAACTTTTGATTTTCTTGAGTTTCTCGAGTTTCTGCAGCACATACCTCGCATTTCAATCCATAAACTCTGTGACATCCTTTCTGGTTGTGTACGAACCTTTTCAGCTGAAAAACAAAATTCTATCTACGT</canonical_amplicon>
		<polymorphic_amplicon>CAGACAATCTCAAATTTTTCTGTTGTAATTCTTGAATTTCCAGCGATTTTTGCTGATTTTCTTCGAGAATTTTCTGATGGGCGATTTTCAAATCGGCCAGTTCTTTCTCCAGAATTGATAACTTTTGATTTTCTTGAGTTTCTCGAGTTTCTGCAGCACAWACCTCGCATTTCAATCCATAAACTCTGTGACATCCTTTCTGGTTGTGTACGAACCTTTTCAGCTGAAAAACAAAATTCTATCTACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26345</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>135112</contig_pos>
        <strand>+</strand>
        <context>TGCAGCACAW[A/T]CCTCGCATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAATTGATAACTTTTGATTTTCTTGAGTTTCTCGAGTTTCTGCAGCACAT</left_flank>
        <right_flank>CCTCGCATTTCAATCCATAAACTCTGTGACATCCTTTCTGGTTGTGTACG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCCAGAAGCTTTGTGGTTTCAGAACTTCGGGAGGTCCCCATTGCATGCTGGACACTGTTGATGCTCTTTGAGCCAGTCGATTGCACACTGAAATATTTTAATTTTTCAAAAAGTTGATAGATCAATGAGAACCTTCGAATGGAATCTTCTTTTGCACAATGGACATCTGATGATCTGATCTTTTTCAGATTCAATTGATTTCTCGCAAATGAGGCATTGGATTTTCAGCTGAGATGTGCAAGCGGTACTGTAGTTTCTATCGTCAATCGATAACTTGGAATTTGCCAATTTATCGGTCAACTGCTTCATTTTCACCTCATTCGTCTCGTTCTTCACAGACAATCTCAAATTTTTCTGTTGTAATTCTTGAATTTCCAGCGATTTTTGCTGATTTTCTTCGAGAATTTTCTGATGGGCGATTTTCAAATCGGCCAGTTCTTTCTCCAGAATTGATAACTTTTGATTTTCTTGAGTTTCTCGAGTTTCTGCAGCACATACCTCGCATTTCAATCCATAAACTCTGTGACATCCTTTCTGGTTGTGTACGAACCTTTTCAGCTGAAAAACAAAATTCTATCTACGTCTCAATAGAGCGCACTTACTTCTGGAAGTCTTTCGAGTACGCAATTCAATTGGCAGTGCTCAACAGCATCAAACAAATCACAAGTTCTGAGGACCTTCTCCTTTTTGCGTTTGTCCACTTCGACATATACAGTTTCTGCGTAATCCTGAATCTCGGGAAAAGTCGTGGTGAGACCCAAATGAGCCAATTCGTTCTTCAGATTCTGAAGAGTGAATCCGTCGGATTTCGCATTTCTGATGTTTTTGGCAGAATCGTTTCTCGAACTACTTATGAAACTGCTGAACCTCTCTTCGTCACAACGGAGAAAGTAAAGTGTCGACTGGAAAAAAAGGTATTTTGCTATCCTCAATGACTATTTTCATTACACAATCCAATTCGAAAACGTTGTTTAAAACGGTGAAGACATCGTGCACA</canonical>
            <polymorphic>AATTCCAGAAGCTTTGTGGTTTCAGAACTTCGGGAGGTCCCCATTGCATGCTGGACACTGTTGATGCTCTTTGAGCCAGTCGATTGCACACTGAAATATTTTAATTTTTCAAAAAGTTGATAGATCAATGAGAACCTTCGAATGGAATCTTCTTTTGCACAATGGACATCTGATGATCTGATCTTTTTCAGATTCAATTGATTTCTCGCAAATGAGGCATTGGATTTTCAGCTGAGATGTGCAAGCGGTACTGTAGTTTCTATCGTCAATCGATAACTTGGAATTTGCCAATTTATCGGTCAACTGCTTCATTTTCACCTCATTCGTCTCGTTCTTCACAGACAATCTCAAATTTTTCTGTTGTAATTCTTGAATTTCCAGCGATTTTTGCTGATTTTCTTCGAGAATTTTCTGATGGGCGATTTTCAAATCGGCCAGTTCTTTCTCCAGAATTGATAACTTTTGATTTTCTTGAGTTTCTCGAGTTTCTGCAGCACATWCCTCGCATTTCAATCCATAAACTCTGTGACATCCTTTCTGGTTGTGTACGAACCTTTTCAGCTGAAAAACAAAATTCTATCTACGTCTCAATAGAGCGCACTTACTTCTGGAAGTCTTTCGAGTACGCAATTCAATTGGCAGTGCTCAACAGCATCAAACAAATCACAAGTTCTGAGGACCTTCTCCTTTTTGCGTTTGTCCACTTCGACATATACAGTTTCTGCGTAATCCTGAATCTCGGGAAAAGTCGTGGTGAGACCCAAATGAGCCAATTCGTTCTTCAGATTCTGAAGAGTGAATCCGTCGGATTTCGCATTTCTGATGTTTTTGGCAGAATCGTTTCTCGAACTACTTATGAAACTGCTGAACCTCTCTTCGTCACAACGGAGAAAGTAAAGTGTCGACTGGAAAAAAAGGTATTTTGCTATCCTCAATGACTATTTTCATTACACAATCCAATTCGAAAACGTTGTTTAAAACGGTGAAGACATCGTGCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGACAATCTCAAATTTTTCTGT</pcr_primer_p1>
		<pcr_primer_p2>ACGTAGATAGAATTTTGTTTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGACAATCTCAAATTTTTCTGTTGTAATTCTTGAATTTCCAGCGATTTTTGCTGATTTTCTTCGAGAATTTTCTGATGGGCGATTTTCAAATCGGCCAGTTCTTTCTCCAGAATTGATAACTTTTGATTTTCTTGAGTTTCTCGAGTTTCTGCAGCACATACCTCGCATTTCAATCCATAAACTCTGTGACATCCTTTCTGGTTGTGTACGAACCTTTTCAGCTGAAAAACAAAATTCTATCTACGT</canonical_amplicon>
		<polymorphic_amplicon>CAGACAATCTCAAATTTTTCTGTTGTAATTCTTGAATTTCCAGCGATTTTTGCTGATTTTCTTCGAGAATTTTCTGATGGGCGATTTTCAAATCGGCCAGTTCTTTCTCCAGAATTGATAACTTTTGATTTTCTTGAGTTTCTCGAGTTTCTGCAGCACATWCCTCGCATTTCAATCCATAAACTCTGTGACATCCTTTCTGGTTGTGTACGAACCTTTTCAGCTGAAAAACAAAATTCTATCTACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26346</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>135406</contig_pos>
        <strand>+</strand>
        <context>AGATTCTGAA[C/G]AGTGAATCCG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAAGTCGTGGTGAGACCCAAATGAGCCAATTCGTTCTTCAGATTCTGAA</left_flank>
        <right_flank>AGTGAATCCGTCGGATTTCGCATTTCTGATGTTTTTGGCAGAATCGTTTC</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGGTCAACTGCTTCATTTTCACCTCATTCGTCTCGTTCTTCACAGACAATCTCAAATTTTTCTGTTGTAATTCTTGAATTTCCAGCGATTTTTGCTGATTTTCTTCGAGAATTTTCTGATGGGCGATTTTCAAATCGGCCAGTTCTTTCTCCAGAATTGATAACTTTTGATTTTCTTGAGTTTCTCGAGTTTCTGCAGCACATACCTCGCATTTCAATCCATAAACTCTGTGACATCCTTTCTGGTTGTGTACGAACCTTTTCAGCTGAAAAACAAAATTCTATCTACGTCTCAATAGAGCGCACTTACTTCTGGAAGTCTTTCGAGTACGCAATTCAATTGGCAGTGCTCAACAGCATCAAACAAATCACAAGTTCTGAGGACCTTCTCCTTTTTGCGTTTGTCCACTTCGACATATACAGTTTCTGCGTAATCCTGAATCTCGGGAAAAGTCGTGGTGAGACCCAAATGAGCCAATTCGTTCTTCAGATTCTGAAGAGTGAATCCGTCGGATTTCGCATTTCTGATGTTTTTGGCAGAATCGTTTCTCGAACTACTTATGAAACTGCTGAACCTCTCTTCGTCACAACGGAGAAAGTAAAGTGTCGACTGGAAAAAAAGGTATTTTGCTATCCTCAATGACTATTTTCATTACACAATCCAATTCGAAAACGTTGTTTAAAACGGTGAAGACATCGTGCACATTGATATTCGCTTTTTGGAAATACTTCGAACCAAGAGTGAGTTCCTTGAAGAATTCAAAAAAGGAATCGATCGCCAGAAATACAAAATTCGTTGGGAGTCTCTTGAGTTGATATTGGAATAGGAATTGCTCTATGTTTTGCACGAAGGATTGGATAACGAATGAACTGAACAATTGATTGGTTTTATTTGTGCGCTCTATCGGTAACCCTAACCTCGATGTTTTTGGTGTCAAAGTTCTTGAGAACCTCTTCCAAACTGATTGTATCCAATCGTTTATTCAATGTTAGTTTGGC</canonical>
            <polymorphic>ATCGGTCAACTGCTTCATTTTCACCTCATTCGTCTCGTTCTTCACAGACAATCTCAAATTTTTCTGTTGTAATTCTTGAATTTCCAGCGATTTTTGCTGATTTTCTTCGAGAATTTTCTGATGGGCGATTTTCAAATCGGCCAGTTCTTTCTCCAGAATTGATAACTTTTGATTTTCTTGAGTTTCTCGAGTTTCTGCAGCACATACCTCGCATTTCAATCCATAAACTCTGTGACATCCTTTCTGGTTGTGTACGAACCTTTTCAGCTGAAAAACAAAATTCTATCTACGTCTCAATAGAGCGCACTTACTTCTGGAAGTCTTTCGAGTACGCAATTCAATTGGCAGTGCTCAACAGCATCAAACAAATCACAAGTTCTGAGGACCTTCTCCTTTTTGCGTTTGTCCACTTCGACATATACAGTTTCTGCGTAATCCTGAATCTCGGGAAAAGTCGTGGTGAGACCCAAATGAGCCAATTCGTTCTTCAGATTCTGAASAGTGAATCCGTCGGATTTCGCATTTCTGATGTTTTTGGCAGAATCGTTTCTCGAACTACTTATGAAACTGCTGAACCTCTCTTCGTCACAACGGAGAAAGTAAAGTGTCGACTGGAAAAAAAGGTATTTTGCTATCCTCAATGACTATTTTCATTACACAATCCAATTCGAAAACGTTGTTTAAAACGGTGAAGACATCGTGCACATTGATATTCGCTTTTTGGAAATACTTCGAACCAAGAGTGAGTTCCTTGAAGAATTCAAAAAAGGAATCGATCGCCAGAAATACAAAATTCGTTGGGAGTCTCTTGAGTTGATATTGGAATAGGAATTGCTCTATGTTTTGCACGAAGGATTGGATAACGAATGAACTGAACAATTGATTGGTTTTATTTGTGCGCTCTATCGGTAACCCTAACCTCGATGTTTTTGGTGTCAAAGTTCTTGAGAACCTCTTCCAAACTGATTGTATCCAATCGTTTATTCAATGTTAGTTTGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCCACTTCGACATATACAGTTT</pcr_primer_p1>
		<pcr_primer_p2>TGAAAATAGTCATTGAGGATAGC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCCACTTCGACATATACAGTTTCTGCGTAATCCTGAATCTCGGGAAAAGTCGTGGTGAGACCCAAATGAGCCAATTCGTTCTTCAGATTCTGAAGAGTGAATCCGTCGGATTTCGCATTTCTGATGTTTTTGGCAGAATCGTTTCTCGAACTACTTATGAAACTGCTGAACCTCTCTTCGTCACAACGGAGAAAGTAAAGTGTCGACTGGAAAAAAAGGTATTTTGCTATCCTCAATGACTATTTTCA</canonical_amplicon>
		<polymorphic_amplicon>GTCCACTTCGACATATACAGTTTCTGCGTAATCCTGAATCTCGGGAAAAGTCGTGGTGAGACCCAAATGAGCCAATTCGTTCTTCAGATTCTGAASAGTGAATCCGTCGGATTTCGCATTTCTGATGTTTTTGGCAGAATCGTTTCTCGAACTACTTATGAAACTGCTGAACCTCTCTTCGTCACAACGGAGAAAGTAAAGTGTCGACTGGAAAAAAAGGTATTTTGCTATCCTCAATGACTATTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26347</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>151035</contig_pos>
        <strand>+</strand>
        <context>GGAATATGGA[C/T]GTTGAGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAACTGGGTGAATATCATTGGAAAGCCACTCTCACCCAAGGGAATATGGA</left_flank>
        <right_flank>GTTGAGAAAACGGGATTGGCTCAAATTCGAACGGCGCTGAGAGCAAAAGA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACTTGTGATATTTTGACATTTTCAAAACGAATCACTGGGTTTATGGATGAAGTGGAGAAGAGCTTGCTCGCTGAGTTAGTCTCTCCTTTTTGGCGGGAAAATTTGAAAAATTGATTTCTAGGAATTTCGAAAATTCAAAAAAAAAATTCAGTTCGGAGAATTTGAATTTTTTTCTTGAAATTCTGAAAATTCTAGTTTCCATGATGGCCGAACTTTTGCAAACAGAGTTTTCTAGGCCACTGTGTCAAAATTACCTAGAAATGGCCTGATATTCATCTGGTAGAGTTTCTAGGCCATTTTGACATGATGGCCGAACTTTTGCAAATTGGGGGTTTCTAGGCCACCACTTTTTTGGCCAACGAAAACCGAAAATCCCGAATCTTGCAGACCAATGCAAACCCAAGACCATCGTGACGCCTTCGTTTCGTATATGAATGATGTTCGTACGCAACTGGGTGAATATCATTGGAAAGCCACTCTCACCCAAGGGAATATGGACGTTGAGAAAACGGGATTGGCTCAAATTCGAACGGCGCTGAGAGCAAAAGAACGAGAAGTGGCGAATACGACGTTGGAGATGAAAAAGGTACTGTAGGTAGATTCCCGTAAGAGATATCAAAAAGTAGTCAACCGATAAAAGATTTGTGATATTATGATAAACATTTTATCAGTTTACCACTTTTTGATATCTTTGATATGAGCCGAGATAAATTGGTTCGAAGTTAACCCTTTAACTTTGACCCATTATAGCTCAATTACTAGAAGAGATATCAAAATGGTGTCAACTGATAAAATGTTTATTATAAAATCCTTAACATTTTATCAGTTGACCACTTTTCGGTATCAGTTACAGTAACCGAGATAAATTGGCTCAAAATAGACGACTATTTTCAGCTCCTCAATCTCAATCGACTGCTTCAAAAAACGGCTGCTGAATTGACGACCAACCAGTGATTCATCATTCTTTTTTGTATAAAATTTTGAAAATTTTGAACTTAA</canonical>
            <polymorphic>CACTTGTGATATTTTGACATTTTCAAAACGAATCACTGGGTTTATGGATGAAGTGGAGAAGAGCTTGCTCGCTGAGTTAGTCTCTCCTTTTTGGCGGGAAAATTTGAAAAATTGATTTCTAGGAATTTCGAAAATTCAAAAAAAAAATTCAGTTCGGAGAATTTGAATTTTTTTCTTGAAATTCTGAAAATTCTAGTTTCCATGATGGCCGAACTTTTGCAAACAGAGTTTTCTAGGCCACTGTGTCAAAATTACCTAGAAATGGCCTGATATTCATCTGGTAGAGTTTCTAGGCCATTTTGACATGATGGCCGAACTTTTGCAAATTGGGGGTTTCTAGGCCACCACTTTTTTGGCCAACGAAAACCGAAAATCCCGAATCTTGCAGACCAATGCAAACCCAAGACCATCGTGACGCCTTCGTTTCGTATATGAATGATGTTCGTACGCAACTGGGTGAATATCATTGGAAAGCCACTCTCACCCAAGGGAATATGGAYGTTGAGAAAACGGGATTGGCTCAAATTCGAACGGCGCTGAGAGCAAAAGAACGAGAAGTGGCGAATACGACGTTGGAGATGAAAAAGGTACTGTAGGTAGATTCCCGTAAGAGATATCAAAAAGTAGTCAACCGATAAAAGATTTGTGATATTATGATAAACATTTTATCAGTTTACCACTTTTTGATATCTTTGATATGAGCCGAGATAAATTGGTTCGAAGTTAACCCTTTAACTTTGACCCATTATAGCTCAATTACTAGAAGAGATATCAAAATGGTGTCAACTGATAAAATGTTTATTATAAAATCCTTAACATTTTATCAGTTGACCACTTTTCGGTATCAGTTACAGTAACCGAGATAAATTGGCTCAAAATAGACGACTATTTTCAGCTCCTCAATCTCAATCGACTGCTTCAAAAAACGGCTGCTGAATTGACGACCAACCAGTGATTCATCATTCTTTTTTGTATAAAATTTTGAAAATTTTGAACTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>499 430 71</canonical_bands>
                <polymorphic_bands>570 430</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCGTTTCGTATATGAATGATGT</pcr_primer_p1>
		<pcr_primer_p2>TTTCATCTCCAACGTCGTAT</pcr_primer_p2>
		<pcr_amplicon_size>165</pcr_amplicon_size>
		<canonical_amplicon>TTCGTTTCGTATATGAATGATGTTCGTACGCAACTGGGTGAATATCATTGGAAAGCCACTCTCACCCAAGGGAATATGGACGTTGAGAAAACGGGATTGGCTCAAATTCGAACGGCGCTGAGAGCAAAAGAACGAGAAGTGGCGAATACGACGTTGGAGATGAAA</canonical_amplicon>
		<polymorphic_amplicon>TTCGTTTCGTATATGAATGATGTTCGTACGCAACTGGGTGAATATCATTGGAAAGCCACTCTCACCCAAGGGAATATGGAYGTTGAGAAAACGGGATTGGCTCAAATTCGAACGGCGCTGAGAGCAAAAGAACGAGAAGTGGCGAATACGACGTTGGAGATGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26348</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>151168</contig_pos>
        <strand></strand>
        <context>agtagtcaac[C/T]gataaaagat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAGGTACTGTAGGTAGATTCCCGTAAGAGATATCAAAAAGTAGTCAAC</left_flank>
        <right_flank>GATAAAAGATTTGTGATATTATGATAAACATTTTATCAGTTTACCACTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCAAAAAAAAAATTCAGTTCGGAGAATTTGAATTTTTTTCTTGAAATTCTGAAAATTCTAGTTTCCATGATGGCCGAACTTTTGCAAACAGAGTTTTCTAGGCCACTGTGTCAAAATTACCTAGAAATGGCCTGATATTCATCTGGTAGAGTTTCTAGGCCATTTTGACATGATGGCCGAACTTTTGCAAATTGGGGGTTTCTAGGCCACCACTTTTTTGGCCAACGAAAACCGAAAATCCCGAATCTTGCAGACCAATGCAAACCCAAGACCATCGTGACGCCTTCGTTTCGTATATGAATGATGTTCGTACGCAACTGGGTGAATATCATTGGAAAGCCACTCTCACCCAAGGGAATATGGACGTTGAGAAAACGGGATTGGCTCAAATTCGAACGGCGCTGAGAGCAAAAGAACGAGAAGTGGCGAATACGACGTTGGAGATGAAAAAGGTACTGTAGGTAGATTCCCGTAAGAGATATCAAAAAGTAGTCAACCGATAAAAGATTTGTGATATTATGATAAACATTTTATCAGTTTACCACTTTTTGATATCTTTGATATGAGCCGAGATAAATTGGTTCGAAGTTAACCCTTTAACTTTGACCCATTATAGCTCAATTACTAGAAGAGATATCAAAATGGTGTCAACTGATAAAATGTTTATTATAAAATCCTTAACATTTTATCAGTTGACCACTTTTCGGTATCAGTTACAGTAACCGAGATAAATTGGCTCAAAATAGACGACTATTTTCAGCTCCTCAATCTCAATCGACTGCTTCAAAAAACGGCTGCTGAATTGACGACCAACCAGTGATTCATCATTCTTTTTTGTATAAAATTTTGAAAATTTTGAACTTAATGATAAATTGTGATATTTGATTGATTTTGTTCTTTCTGTCTACAGTTTGAAAAAACACTATTAAAGGAGGCGAAAAAAATTTCGGGGGCAGTTCGGGGGACGAAATCGCGCCGCGCTTATGTAGACCATCGGT</canonical>
            <polymorphic>ATTCAAAAAAAAAATTCAGTTCGGAGAATTTGAATTTTTTTCTTGAAATTCTGAAAATTCTAGTTTCCATGATGGCCGAACTTTTGCAAACAGAGTTTTCTAGGCCACTGTGTCAAAATTACCTAGAAATGGCCTGATATTCATCTGGTAGAGTTTCTAGGCCATTTTGACATGATGGCCGAACTTTTGCAAATTGGGGGTTTCTAGGCCACCACTTTTTTGGCCAACGAAAACCGAAAATCCCGAATCTTGCAGACCAATGCAAACCCAAGACCATCGTGACGCCTTCGTTTCGTATATGAATGATGTTCGTACGCAACTGGGTGAATATCATTGGAAAGCCACTCTCACCCAAGGGAATATGGACGTTGAGAAAACGGGATTGGCTCAAATTCGAACGGCGCTGAGAGCAAAAGAACGAGAAGTGGCGAATACGACGTTGGAGATGAAAAAGGTACTGTAGGTAGATTCCCGTAAGAGATATCAAAAAGTAGTCAACYGATAAAAGATTTGTGATATTATGATAAACATTTTATCAGTTTACCACTTTTTGATATCTTTGATATGAGCCGAGATAAATTGGTTCGAAGTTAACCCTTTAACTTTGACCCATTATAGCTCAATTACTAGAAGAGATATCAAAATGGTGTCAACTGATAAAATGTTTATTATAAAATCCTTAACATTTTATCAGTTGACCACTTTTCGGTATCAGTTACAGTAACCGAGATAAATTGGCTCAAAATAGACGACTATTTTCAGCTCCTCAATCTCAATCGACTGCTTCAAAAAACGGCTGCTGAATTGACGACCAACCAGTGATTCATCATTCTTTTTTGTATAAAATTTTGAAAATTTTGAACTTAATGATAAATTGTGATATTTGATTGATTTTGTTCTTTCTGTCTACAGTTTGAAAAAACACTATTAAAGGAGGCGAAAAAAATTTCGGGGGCAGTTCGGGGGACGAAATCGCGCCGCGCTTATGTAGACCATCGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAGATGAAAAAGGTACTGTAG</pcr_primer_p1>
		<pcr_primer_p2>AGATTGAGGAGCTGAAAATAGTC</pcr_primer_p2>
		<pcr_amplicon_size>333</pcr_amplicon_size>
		<canonical_amplicon>TGGAGATGAAAAAGGTACTGTAGGTAGATTCCCGTAAGAGATATCAAAAAGTAGTCAACCGATAAAAGATTTGTGATATTATGATAAACATTTTATCAGTTTACCACTTTTTGATATCTTTGATATGAGCCGAGATAAATTGGTTCGAAGTTAACCCTTTAACTTTGACCCATTATAGCTCAATTACTAGAAGAGATATCAAAATGGTGTCAACTGATAAAATGTTTATTATAAAATCCTTAACATTTTATCAGTTGACCACTTTTCGGTATCAGTTACAGTAACCGAGATAAATTGGCTCAAAATAGACGACTATTTTCAGCTCCTCAATCT</canonical_amplicon>
		<polymorphic_amplicon>TGGAGATGAAAAAGGTACTGTAGGTAGATTCCCGTAAGAGATATCAAAAAGTAGTCAACYGATAAAAGATTTGTGATATTATGATAAACATTTTATCAGTTTACCACTTTTTGATATCTTTGATATGAGCCGAGATAAATTGGTTCGAAGTTAACCCTTTAACTTTGACCCATTATAGCTCAATTACTAGAAGAGATATCAAAATGGTGTCAACTGATAAAATGTTTATTATAAAATCCTTAACATTTTATCAGTTGACCACTTTTCGGTATCAGTTACAGTAACCGAGATAAATTGGCTCAAAATAGACGACTATTTTCAGCTCCTCAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26349</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>151210</contig_pos>
        <strand></strand>
        <context>tttatcagtt[T/G]accacttttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TAGTCAACCGATAAAAGATTTGTGATATTATGATAAACATTTTATCAGTT</left_flank>
        <right_flank>ACCACTTTTTGATATCTTTGATATGAGCCGAGATAAATTGGTTCGAAGTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAATTCTGAAAATTCTAGTTTCCATGATGGCCGAACTTTTGCAAACAGAGTTTTCTAGGCCACTGTGTCAAAATTACCTAGAAATGGCCTGATATTCATCTGGTAGAGTTTCTAGGCCATTTTGACATGATGGCCGAACTTTTGCAAATTGGGGGTTTCTAGGCCACCACTTTTTTGGCCAACGAAAACCGAAAATCCCGAATCTTGCAGACCAATGCAAACCCAAGACCATCGTGACGCCTTCGTTTCGTATATGAATGATGTTCGTACGCAACTGGGTGAATATCATTGGAAAGCCACTCTCACCCAAGGGAATATGGACGTTGAGAAAACGGGATTGGCTCAAATTCGAACGGCGCTGAGAGCAAAAGAACGAGAAGTGGCGAATACGACGTTGGAGATGAAAAAGGTACTGTAGGTAGATTCCCGTAAGAGATATCAAAAAGTAGTCAACCGATAAAAGATTTGTGATATTATGATAAACATTTTATCAGTTTACCACTTTTTGATATCTTTGATATGAGCCGAGATAAATTGGTTCGAAGTTAACCCTTTAACTTTGACCCATTATAGCTCAATTACTAGAAGAGATATCAAAATGGTGTCAACTGATAAAATGTTTATTATAAAATCCTTAACATTTTATCAGTTGACCACTTTTCGGTATCAGTTACAGTAACCGAGATAAATTGGCTCAAAATAGACGACTATTTTCAGCTCCTCAATCTCAATCGACTGCTTCAAAAAACGGCTGCTGAATTGACGACCAACCAGTGATTCATCATTCTTTTTTGTATAAAATTTTGAAAATTTTGAACTTAATGATAAATTGTGATATTTGATTGATTTTGTTCTTTCTGTCTACAGTTTGAAAAAACACTATTAAAGGAGGCGAAAAAAATTTCGGGGGCAGTTCGGGGGACGAAATCGCGCCGCGCTTATGTAGACCATCGGTCGTCAGGCGCCTTCGCACCCCCGTAGCTCAGCCGGTAGCGGC</canonical>
            <polymorphic>TTGAAATTCTGAAAATTCTAGTTTCCATGATGGCCGAACTTTTGCAAACAGAGTTTTCTAGGCCACTGTGTCAAAATTACCTAGAAATGGCCTGATATTCATCTGGTAGAGTTTCTAGGCCATTTTGACATGATGGCCGAACTTTTGCAAATTGGGGGTTTCTAGGCCACCACTTTTTTGGCCAACGAAAACCGAAAATCCCGAATCTTGCAGACCAATGCAAACCCAAGACCATCGTGACGCCTTCGTTTCGTATATGAATGATGTTCGTACGCAACTGGGTGAATATCATTGGAAAGCCACTCTCACCCAAGGGAATATGGACGTTGAGAAAACGGGATTGGCTCAAATTCGAACGGCGCTGAGAGCAAAAGAACGAGAAGTGGCGAATACGACGTTGGAGATGAAAAAGGTACTGTAGGTAGATTCCCGTAAGAGATATCAAAAAGTAGTCAACCGATAAAAGATTTGTGATATTATGATAAACATTTTATCAGTTKACCACTTTTTGATATCTTTGATATGAGCCGAGATAAATTGGTTCGAAGTTAACCCTTTAACTTTGACCCATTATAGCTCAATTACTAGAAGAGATATCAAAATGGTGTCAACTGATAAAATGTTTATTATAAAATCCTTAACATTTTATCAGTTGACCACTTTTCGGTATCAGTTACAGTAACCGAGATAAATTGGCTCAAAATAGACGACTATTTTCAGCTCCTCAATCTCAATCGACTGCTTCAAAAAACGGCTGCTGAATTGACGACCAACCAGTGATTCATCATTCTTTTTTGTATAAAATTTTGAAAATTTTGAACTTAATGATAAATTGTGATATTTGATTGATTTTGTTCTTTCTGTCTACAGTTTGAAAAAACACTATTAAAGGAGGCGAAAAAAATTTCGGGGGCAGTTCGGGGGACGAAATCGCGCCGCGCTTATGTAGACCATCGGTCGTCAGGCGCCTTCGCACCCCCGTAGCTCAGCCGGTAGCGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAGATGAAAAAGGTACTGTAG</pcr_primer_p1>
		<pcr_primer_p2>AGATTGAGGAGCTGAAAATAGTC</pcr_primer_p2>
		<pcr_amplicon_size>333</pcr_amplicon_size>
		<canonical_amplicon>TGGAGATGAAAAAGGTACTGTAGGTAGATTCCCGTAAGAGATATCAAAAAGTAGTCAACCGATAAAAGATTTGTGATATTATGATAAACATTTTATCAGTTTACCACTTTTTGATATCTTTGATATGAGCCGAGATAAATTGGTTCGAAGTTAACCCTTTAACTTTGACCCATTATAGCTCAATTACTAGAAGAGATATCAAAATGGTGTCAACTGATAAAATGTTTATTATAAAATCCTTAACATTTTATCAGTTGACCACTTTTCGGTATCAGTTACAGTAACCGAGATAAATTGGCTCAAAATAGACGACTATTTTCAGCTCCTCAATCT</canonical_amplicon>
		<polymorphic_amplicon>TGGAGATGAAAAAGGTACTGTAGGTAGATTCCCGTAAGAGATATCAAAAAGTAGTCAACCGATAAAAGATTTGTGATATTATGATAAACATTTTATCAGTTKACCACTTTTTGATATCTTTGATATGAGCCGAGATAAATTGGTTCGAAGTTAACCCTTTAACTTTGACCCATTATAGCTCAATTACTAGAAGAGATATCAAAATGGTGTCAACTGATAAAATGTTTATTATAAAATCCTTAACATTTTATCAGTTGACCACTTTTCGGTATCAGTTACAGTAACCGAGATAAATTGGCTCAAAATAGACGACTATTTTCAGCTCCTCAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26350</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>151221</contig_pos>
        <strand></strand>
        <context>accacttttt[G/A]atatctttga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAAAAGATTTGTGATATTATGATAAACATTTTATCAGTTTACCACTTTTT</left_flank>
        <right_flank>ATATCTTTGATATGAGCCGAGATAAATTGGTTCGAAGTTAACCCTTTAAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATTCTAGTTTCCATGATGGCCGAACTTTTGCAAACAGAGTTTTCTAGGCCACTGTGTCAAAATTACCTAGAAATGGCCTGATATTCATCTGGTAGAGTTTCTAGGCCATTTTGACATGATGGCCGAACTTTTGCAAATTGGGGGTTTCTAGGCCACCACTTTTTTGGCCAACGAAAACCGAAAATCCCGAATCTTGCAGACCAATGCAAACCCAAGACCATCGTGACGCCTTCGTTTCGTATATGAATGATGTTCGTACGCAACTGGGTGAATATCATTGGAAAGCCACTCTCACCCAAGGGAATATGGACGTTGAGAAAACGGGATTGGCTCAAATTCGAACGGCGCTGAGAGCAAAAGAACGAGAAGTGGCGAATACGACGTTGGAGATGAAAAAGGTACTGTAGGTAGATTCCCGTAAGAGATATCAAAAAGTAGTCAACCGATAAAAGATTTGTGATATTATGATAAACATTTTATCAGTTTACCACTTTTTGATATCTTTGATATGAGCCGAGATAAATTGGTTCGAAGTTAACCCTTTAACTTTGACCCATTATAGCTCAATTACTAGAAGAGATATCAAAATGGTGTCAACTGATAAAATGTTTATTATAAAATCCTTAACATTTTATCAGTTGACCACTTTTCGGTATCAGTTACAGTAACCGAGATAAATTGGCTCAAAATAGACGACTATTTTCAGCTCCTCAATCTCAATCGACTGCTTCAAAAAACGGCTGCTGAATTGACGACCAACCAGTGATTCATCATTCTTTTTTGTATAAAATTTTGAAAATTTTGAACTTAATGATAAATTGTGATATTTGATTGATTTTGTTCTTTCTGTCTACAGTTTGAAAAAACACTATTAAAGGAGGCGAAAAAAATTTCGGGGGCAGTTCGGGGGACGAAATCGCGCCGCGCTTATGTAGACCATCGGTCGTCAGGCGCCTTCGCACCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCT</canonical>
            <polymorphic>AAAATTCTAGTTTCCATGATGGCCGAACTTTTGCAAACAGAGTTTTCTAGGCCACTGTGTCAAAATTACCTAGAAATGGCCTGATATTCATCTGGTAGAGTTTCTAGGCCATTTTGACATGATGGCCGAACTTTTGCAAATTGGGGGTTTCTAGGCCACCACTTTTTTGGCCAACGAAAACCGAAAATCCCGAATCTTGCAGACCAATGCAAACCCAAGACCATCGTGACGCCTTCGTTTCGTATATGAATGATGTTCGTACGCAACTGGGTGAATATCATTGGAAAGCCACTCTCACCCAAGGGAATATGGACGTTGAGAAAACGGGATTGGCTCAAATTCGAACGGCGCTGAGAGCAAAAGAACGAGAAGTGGCGAATACGACGTTGGAGATGAAAAAGGTACTGTAGGTAGATTCCCGTAAGAGATATCAAAAAGTAGTCAACCGATAAAAGATTTGTGATATTATGATAAACATTTTATCAGTTTACCACTTTTTRATATCTTTGATATGAGCCGAGATAAATTGGTTCGAAGTTAACCCTTTAACTTTGACCCATTATAGCTCAATTACTAGAAGAGATATCAAAATGGTGTCAACTGATAAAATGTTTATTATAAAATCCTTAACATTTTATCAGTTGACCACTTTTCGGTATCAGTTACAGTAACCGAGATAAATTGGCTCAAAATAGACGACTATTTTCAGCTCCTCAATCTCAATCGACTGCTTCAAAAAACGGCTGCTGAATTGACGACCAACCAGTGATTCATCATTCTTTTTTGTATAAAATTTTGAAAATTTTGAACTTAATGATAAATTGTGATATTTGATTGATTTTGTTCTTTCTGTCTACAGTTTGAAAAAACACTATTAAAGGAGGCGAAAAAAATTTCGGGGGCAGTTCGGGGGACGAAATCGCGCCGCGCTTATGTAGACCATCGGTCGTCAGGCGCCTTCGCACCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>429 416 82 73</canonical_bands>
                <polymorphic_bands>429 416 155</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGAGATGAAAAAGGTACTGTAG</pcr_primer_p1>
		<pcr_primer_p2>AGATTGAGGAGCTGAAAATAGTC</pcr_primer_p2>
		<pcr_amplicon_size>333</pcr_amplicon_size>
		<canonical_amplicon>TGGAGATGAAAAAGGTACTGTAGGTAGATTCCCGTAAGAGATATCAAAAAGTAGTCAACCGATAAAAGATTTGTGATATTATGATAAACATTTTATCAGTTTACCACTTTTTGATATCTTTGATATGAGCCGAGATAAATTGGTTCGAAGTTAACCCTTTAACTTTGACCCATTATAGCTCAATTACTAGAAGAGATATCAAAATGGTGTCAACTGATAAAATGTTTATTATAAAATCCTTAACATTTTATCAGTTGACCACTTTTCGGTATCAGTTACAGTAACCGAGATAAATTGGCTCAAAATAGACGACTATTTTCAGCTCCTCAATCT</canonical_amplicon>
		<polymorphic_amplicon>TGGAGATGAAAAAGGTACTGTAGGTAGATTCCCGTAAGAGATATCAAAAAGTAGTCAACCGATAAAAGATTTGTGATATTATGATAAACATTTTATCAGTTTACCACTTTTTRATATCTTTGATATGAGCCGAGATAAATTGGTTCGAAGTTAACCCTTTAACTTTGACCCATTATAGCTCAATTACTAGAAGAGATATCAAAATGGTGTCAACTGATAAAATGTTTATTATAAAATCCTTAACATTTTATCAGTTGACCACTTTTCGGTATCAGTTACAGTAACCGAGATAAATTGGCTCAAAATAGACGACTATTTTCAGCTCCTCAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26351</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>151255</contig_pos>
        <strand></strand>
        <context>aaattggttc[G/A]aagttaaCcc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAGTTTACCACTTTTTGATATCTTTGATATGAGCCGAGATAAATTGGTTC</left_flank>
        <right_flank>AAGTTAACCCTTTAACTTTGACCCATTATAGCTCAATTACTAGAAGAGAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACAGAGTTTTCTAGGCCACTGTGTCAAAATTACCTAGAAATGGCCTGATATTCATCTGGTAGAGTTTCTAGGCCATTTTGACATGATGGCCGAACTTTTGCAAATTGGGGGTTTCTAGGCCACCACTTTTTTGGCCAACGAAAACCGAAAATCCCGAATCTTGCAGACCAATGCAAACCCAAGACCATCGTGACGCCTTCGTTTCGTATATGAATGATGTTCGTACGCAACTGGGTGAATATCATTGGAAAGCCACTCTCACCCAAGGGAATATGGACGTTGAGAAAACGGGATTGGCTCAAATTCGAACGGCGCTGAGAGCAAAAGAACGAGAAGTGGCGAATACGACGTTGGAGATGAAAAAGGTACTGTAGGTAGATTCCCGTAAGAGATATCAAAAAGTAGTCAACCGATAAAAGATTTGTGATATTATGATAAACATTTTATCAGTTTACCACTTTTTGATATCTTTGATATGAGCCGAGATAAATTGGTTCGAAGTTAACCCTTTAACTTTGACCCATTATAGCTCAATTACTAGAAGAGATATCAAAATGGTGTCAACTGATAAAATGTTTATTATAAAATCCTTAACATTTTATCAGTTGACCACTTTTCGGTATCAGTTACAGTAACCGAGATAAATTGGCTCAAAATAGACGACTATTTTCAGCTCCTCAATCTCAATCGACTGCTTCAAAAAACGGCTGCTGAATTGACGACCAACCAGTGATTCATCATTCTTTTTTGTATAAAATTTTGAAAATTTTGAACTTAATGATAAATTGTGATATTTGATTGATTTTGTTCTTTCTGTCTACAGTTTGAAAAAACACTATTAAAGGAGGCGAAAAAAATTTCGGGGGCAGTTCGGGGGACGAAATCGCGCCGCGCTTATGTAGACCATCGGTCGTCAGGCGCCTTCGCACCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCATGAGTTCAACTCCTCATGGGG</canonical>
            <polymorphic>AAACAGAGTTTTCTAGGCCACTGTGTCAAAATTACCTAGAAATGGCCTGATATTCATCTGGTAGAGTTTCTAGGCCATTTTGACATGATGGCCGAACTTTTGCAAATTGGGGGTTTCTAGGCCACCACTTTTTTGGCCAACGAAAACCGAAAATCCCGAATCTTGCAGACCAATGCAAACCCAAGACCATCGTGACGCCTTCGTTTCGTATATGAATGATGTTCGTACGCAACTGGGTGAATATCATTGGAAAGCCACTCTCACCCAAGGGAATATGGACGTTGAGAAAACGGGATTGGCTCAAATTCGAACGGCGCTGAGAGCAAAAGAACGAGAAGTGGCGAATACGACGTTGGAGATGAAAAAGGTACTGTAGGTAGATTCCCGTAAGAGATATCAAAAAGTAGTCAACCGATAAAAGATTTGTGATATTATGATAAACATTTTATCAGTTTACCACTTTTTGATATCTTTGATATGAGCCGAGATAAATTGGTTCRAAGTTAACCCTTTAACTTTGACCCATTATAGCTCAATTACTAGAAGAGATATCAAAATGGTGTCAACTGATAAAATGTTTATTATAAAATCCTTAACATTTTATCAGTTGACCACTTTTCGGTATCAGTTACAGTAACCGAGATAAATTGGCTCAAAATAGACGACTATTTTCAGCTCCTCAATCTCAATCGACTGCTTCAAAAAACGGCTGCTGAATTGACGACCAACCAGTGATTCATCATTCTTTTTTGTATAAAATTTTGAAAATTTTGAACTTAATGATAAATTGTGATATTTGATTGATTTTGTTCTTTCTGTCTACAGTTTGAAAAAACACTATTAAAGGAGGCGAAAAAAATTTCGGGGGCAGTTCGGGGGACGAAATCGCGCCGCGCTTATGTAGACCATCGGTCGTCAGGCGCCTTCGCACCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCATGAGTTCAACTCCTCATGGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 307 191</canonical_bands>
                <polymorphic_bands>693 307</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>309 308 192 191</canonical_bands>
                <polymorphic_bands>383 309 308</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGAGATGAAAAAGGTACTGTAG</pcr_primer_p1>
		<pcr_primer_p2>AGATTGAGGAGCTGAAAATAGTC</pcr_primer_p2>
		<pcr_amplicon_size>333</pcr_amplicon_size>
		<canonical_amplicon>TGGAGATGAAAAAGGTACTGTAGGTAGATTCCCGTAAGAGATATCAAAAAGTAGTCAACCGATAAAAGATTTGTGATATTATGATAAACATTTTATCAGTTTACCACTTTTTGATATCTTTGATATGAGCCGAGATAAATTGGTTCGAAGTTAACCCTTTAACTTTGACCCATTATAGCTCAATTACTAGAAGAGATATCAAAATGGTGTCAACTGATAAAATGTTTATTATAAAATCCTTAACATTTTATCAGTTGACCACTTTTCGGTATCAGTTACAGTAACCGAGATAAATTGGCTCAAAATAGACGACTATTTTCAGCTCCTCAATCT</canonical_amplicon>
		<polymorphic_amplicon>TGGAGATGAAAAAGGTACTGTAGGTAGATTCCCGTAAGAGATATCAAAAAGTAGTCAACCGATAAAAGATTTGTGATATTATGATAAACATTTTATCAGTTTACCACTTTTTGATATCTTTGATATGAGCCGAGATAAATTGGTTCRAAGTTAACCCTTTAACTTTGACCCATTATAGCTCAATTACTAGAAGAGATATCAAAATGGTGTCAACTGATAAAATGTTTATTATAAAATCCTTAACATTTTATCAGTTGACCACTTTTCGGTATCAGTTACAGTAACCGAGATAAATTGGCTCAAAATAGACGACTATTTTCAGCTCCTCAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26352</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>151296</contig_pos>
        <strand></strand>
        <context>gctcaattac[T/A]agaagagata</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATTGGTTCGAAGTTAACCCTTTAACTTTGACCCATTATAGCTCAATTAC</left_flank>
        <right_flank>AGAAGAGATATCAAAATGGTGTCAACTGATAAAATGTTTATTATAAAATC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGCCTGATATTCATCTGGTAGAGTTTCTAGGCCATTTTGACATGATGGCCGAACTTTTGCAAATTGGGGGTTTCTAGGCCACCACTTTTTTGGCCAACGAAAACCGAAAATCCCGAATCTTGCAGACCAATGCAAACCCAAGACCATCGTGACGCCTTCGTTTCGTATATGAATGATGTTCGTACGCAACTGGGTGAATATCATTGGAAAGCCACTCTCACCCAAGGGAATATGGACGTTGAGAAAACGGGATTGGCTCAAATTCGAACGGCGCTGAGAGCAAAAGAACGAGAAGTGGCGAATACGACGTTGGAGATGAAAAAGGTACTGTAGGTAGATTCCCGTAAGAGATATCAAAAAGTAGTCAACCGATAAAAGATTTGTGATATTATGATAAACATTTTATCAGTTTACCACTTTTTGATATCTTTGATATGAGCCGAGATAAATTGGTTCGAAGTTAACCCTTTAACTTTGACCCATTATAGCTCAATTACTAGAAGAGATATCAAAATGGTGTCAACTGATAAAATGTTTATTATAAAATCCTTAACATTTTATCAGTTGACCACTTTTCGGTATCAGTTACAGTAACCGAGATAAATTGGCTCAAAATAGACGACTATTTTCAGCTCCTCAATCTCAATCGACTGCTTCAAAAAACGGCTGCTGAATTGACGACCAACCAGTGATTCATCATTCTTTTTTGTATAAAATTTTGAAAATTTTGAACTTAATGATAAATTGTGATATTTGATTGATTTTGTTCTTTCTGTCTACAGTTTGAAAAAACACTATTAAAGGAGGCGAAAAAAATTTCGGGGGCAGTTCGGGGGACGAAATCGCGCCGCGCTTATGTAGACCATCGGTCGTCAGGCGCCTTCGCACCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCATGAGTTCAACTCCTCATGGGGGTTCTCTATGCAAAATATCAGGAAAACTTTTTTTTTTGGTG</canonical>
            <polymorphic>ATGGCCTGATATTCATCTGGTAGAGTTTCTAGGCCATTTTGACATGATGGCCGAACTTTTGCAAATTGGGGGTTTCTAGGCCACCACTTTTTTGGCCAACGAAAACCGAAAATCCCGAATCTTGCAGACCAATGCAAACCCAAGACCATCGTGACGCCTTCGTTTCGTATATGAATGATGTTCGTACGCAACTGGGTGAATATCATTGGAAAGCCACTCTCACCCAAGGGAATATGGACGTTGAGAAAACGGGATTGGCTCAAATTCGAACGGCGCTGAGAGCAAAAGAACGAGAAGTGGCGAATACGACGTTGGAGATGAAAAAGGTACTGTAGGTAGATTCCCGTAAGAGATATCAAAAAGTAGTCAACCGATAAAAGATTTGTGATATTATGATAAACATTTTATCAGTTTACCACTTTTTGATATCTTTGATATGAGCCGAGATAAATTGGTTCGAAGTTAACCCTTTAACTTTGACCCATTATAGCTCAATTACWAGAAGAGATATCAAAATGGTGTCAACTGATAAAATGTTTATTATAAAATCCTTAACATTTTATCAGTTGACCACTTTTCGGTATCAGTTACAGTAACCGAGATAAATTGGCTCAAAATAGACGACTATTTTCAGCTCCTCAATCTCAATCGACTGCTTCAAAAAACGGCTGCTGAATTGACGACCAACCAGTGATTCATCATTCTTTTTTGTATAAAATTTTGAAAATTTTGAACTTAATGATAAATTGTGATATTTGATTGATTTTGTTCTTTCTGTCTACAGTTTGAAAAAACACTATTAAAGGAGGCGAAAAAAATTTCGGGGGCAGTTCGGGGGACGAAATCGCGCCGCGCTTATGTAGACCATCGGTCGTCAGGCGCCTTCGCACCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCATGAGTTCAACTCCTCATGGGGGTTCTCTATGCAAAATATCAGGAAAACTTTTTTTTTTGGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 423 47 29</canonical_bands>
                <polymorphic_bands>924 47 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGAGATGAAAAAGGTACTGTAG</pcr_primer_p1>
		<pcr_primer_p2>AGATTGAGGAGCTGAAAATAGTC</pcr_primer_p2>
		<pcr_amplicon_size>333</pcr_amplicon_size>
		<canonical_amplicon>TGGAGATGAAAAAGGTACTGTAGGTAGATTCCCGTAAGAGATATCAAAAAGTAGTCAACCGATAAAAGATTTGTGATATTATGATAAACATTTTATCAGTTTACCACTTTTTGATATCTTTGATATGAGCCGAGATAAATTGGTTCGAAGTTAACCCTTTAACTTTGACCCATTATAGCTCAATTACTAGAAGAGATATCAAAATGGTGTCAACTGATAAAATGTTTATTATAAAATCCTTAACATTTTATCAGTTGACCACTTTTCGGTATCAGTTACAGTAACCGAGATAAATTGGCTCAAAATAGACGACTATTTTCAGCTCCTCAATCT</canonical_amplicon>
		<polymorphic_amplicon>TGGAGATGAAAAAGGTACTGTAGGTAGATTCCCGTAAGAGATATCAAAAAGTAGTCAACCGATAAAAGATTTGTGATATTATGATAAACATTTTATCAGTTTACCACTTTTTGATATCTTTGATATGAGCCGAGATAAATTGGTTCGAAGTTAACCCTTTAACTTTGACCCATTATAGCTCAATTACWAGAAGAGATATCAAAATGGTGTCAACTGATAAAATGTTTATTATAAAATCCTTAACATTTTATCAGTTGACCACTTTTCGGTATCAGTTACAGTAACCGAGATAAATTGGCTCAAAATAGACGACTATTTTCAGCTCCTCAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26353</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>151377</contig_pos>
        <strand></strand>
        <context>ccacttttcg[G/A]tatcagttac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAATGTTTATTATAAAATCCTTAACATTTTATCAGTTGACCACTTTTCG</left_flank>
        <right_flank>TATCAGTTACAGTAACCGAGATAAATTGGCTCAAAATAGACGACTATTTT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACCACTTTTTTGGCCAACGAAAACCGAAAATCCCGAATCTTGCAGACCAATGCAAACCCAAGACCATCGTGACGCCTTCGTTTCGTATATGAATGATGTTCGTACGCAACTGGGTGAATATCATTGGAAAGCCACTCTCACCCAAGGGAATATGGACGTTGAGAAAACGGGATTGGCTCAAATTCGAACGGCGCTGAGAGCAAAAGAACGAGAAGTGGCGAATACGACGTTGGAGATGAAAAAGGTACTGTAGGTAGATTCCCGTAAGAGATATCAAAAAGTAGTCAACCGATAAAAGATTTGTGATATTATGATAAACATTTTATCAGTTTACCACTTTTTGATATCTTTGATATGAGCCGAGATAAATTGGTTCGAAGTTAACCCTTTAACTTTGACCCATTATAGCTCAATTACTAGAAGAGATATCAAAATGGTGTCAACTGATAAAATGTTTATTATAAAATCCTTAACATTTTATCAGTTGACCACTTTTCGGTATCAGTTACAGTAACCGAGATAAATTGGCTCAAAATAGACGACTATTTTCAGCTCCTCAATCTCAATCGACTGCTTCAAAAAACGGCTGCTGAATTGACGACCAACCAGTGATTCATCATTCTTTTTTGTATAAAATTTTGAAAATTTTGAACTTAATGATAAATTGTGATATTTGATTGATTTTGTTCTTTCTGTCTACAGTTTGAAAAAACACTATTAAAGGAGGCGAAAAAAATTTCGGGGGCAGTTCGGGGGACGAAATCGCGCCGCGCTTATGTAGACCATCGGTCGTCAGGCGCCTTCGCACCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCATGAGTTCAACTCCTCATGGGGGTTCTCTATGCAAAATATCAGGAAAACTTTTTTTTTTGGTGTCTGGCCTCCTTTAAGAAATGTCGCTCAGAACCTCCAAAATCAGCTAATTATCGATCAATGCCATTTTTGAAGTCTTACAA</canonical>
            <polymorphic>CACCACTTTTTTGGCCAACGAAAACCGAAAATCCCGAATCTTGCAGACCAATGCAAACCCAAGACCATCGTGACGCCTTCGTTTCGTATATGAATGATGTTCGTACGCAACTGGGTGAATATCATTGGAAAGCCACTCTCACCCAAGGGAATATGGACGTTGAGAAAACGGGATTGGCTCAAATTCGAACGGCGCTGAGAGCAAAAGAACGAGAAGTGGCGAATACGACGTTGGAGATGAAAAAGGTACTGTAGGTAGATTCCCGTAAGAGATATCAAAAAGTAGTCAACCGATAAAAGATTTGTGATATTATGATAAACATTTTATCAGTTTACCACTTTTTGATATCTTTGATATGAGCCGAGATAAATTGGTTCGAAGTTAACCCTTTAACTTTGACCCATTATAGCTCAATTACTAGAAGAGATATCAAAATGGTGTCAACTGATAAAATGTTTATTATAAAATCCTTAACATTTTATCAGTTGACCACTTTTCGRTATCAGTTACAGTAACCGAGATAAATTGGCTCAAAATAGACGACTATTTTCAGCTCCTCAATCTCAATCGACTGCTTCAAAAAACGGCTGCTGAATTGACGACCAACCAGTGATTCATCATTCTTTTTTGTATAAAATTTTGAAAATTTTGAACTTAATGATAAATTGTGATATTTGATTGATTTTGTTCTTTCTGTCTACAGTTTGAAAAAACACTATTAAAGGAGGCGAAAAAAATTTCGGGGGCAGTTCGGGGGACGAAATCGCGCCGCGCTTATGTAGACCATCGGTCGTCAGGCGCCTTCGCACCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCATGAGTTCAACTCCTCATGGGGGTTCTCTATGCAAAATATCAGGAAAACTTTTTTTTTTGGTGTCTGGCCTCCTTTAAGAAATGTCGCTCAGAACCTCCAAAATCAGCTAATTATCGATCAATGCCATTTTTGAAGTCTTACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>496 379 125</canonical_bands>
                <polymorphic_bands>875 125</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGAGATGAAAAAGGTACTGTAG</pcr_primer_p1>
		<pcr_primer_p2>AGATTGAGGAGCTGAAAATAGTC</pcr_primer_p2>
		<pcr_amplicon_size>333</pcr_amplicon_size>
		<canonical_amplicon>TGGAGATGAAAAAGGTACTGTAGGTAGATTCCCGTAAGAGATATCAAAAAGTAGTCAACCGATAAAAGATTTGTGATATTATGATAAACATTTTATCAGTTTACCACTTTTTGATATCTTTGATATGAGCCGAGATAAATTGGTTCGAAGTTAACCCTTTAACTTTGACCCATTATAGCTCAATTACTAGAAGAGATATCAAAATGGTGTCAACTGATAAAATGTTTATTATAAAATCCTTAACATTTTATCAGTTGACCACTTTTCGGTATCAGTTACAGTAACCGAGATAAATTGGCTCAAAATAGACGACTATTTTCAGCTCCTCAATCT</canonical_amplicon>
		<polymorphic_amplicon>TGGAGATGAAAAAGGTACTGTAGGTAGATTCCCGTAAGAGATATCAAAAAGTAGTCAACCGATAAAAGATTTGTGATATTATGATAAACATTTTATCAGTTTACCACTTTTTGATATCTTTGATATGAGCCGAGATAAATTGGTTCGAAGTTAACCCTTTAACTTTGACCCATTATAGCTCAATTACTAGAAGAGATATCAAAATGGTGTCAACTGATAAAATGTTTATTATAAAATCCTTAACATTTTATCAGTTGACCACTTTTCGRTATCAGTTACAGTAACCGAGATAAATTGGCTCAAAATAGACGACTATTTTCAGCTCCTCAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26354</snp_id>
        <super_contig>c002201476.Contig1</super_contig>
        <contig_pos>151388</contig_pos>
        <strand>+</strand>
        <context>tatcagttac[G/T]gtaaccgaga</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATAAAATCCTTAACATTTTATCAGTTGACCACTTTTCGGTATCAGTTAC</left_flank>
        <right_flank>GTAACCGAGATAAATTGGCTCAAAATAGACGACTATTTTCAGCTCCTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCCAACGAAAACCGAAAATCCCGAATCTTGCAGACCAATGCAAACCCAAGACCATCGTGACGCCTTCGTTTCGTATATGAATGATGTTCGTACGCAACTGGGTGAATATCATTGGAAAGCCACTCTCACCCAAGGGAATATGGACGTTGAGAAAACGGGATTGGCTCAAATTCGAACGGCGCTGAGAGCAAAAGAACGAGAAGTGGCGAATACGACGTTGGAGATGAAAAAGGTACTGTAGGTAGATTCCCGTAAGAGATATCAAAAAGTAGTCAACCGATAAAAGATTTGTGATATTATGATAAACATTTTATCAGTTTACCACTTTTTGATATCTTTGATATGAGCCGAGATAAATTGGTTCGAAGTTAACCCTTTAACTTTGACCCATTATAGCTCAATTACTAGAAGAGATATCAAAATGGTGTCAACTGATAAAATGTTTATTATAAAATCCTTAACATTTTATCAGTTGACCACTTTTCGGTATCAGTTACAGTAACCGAGATAAATTGGCTCAAAATAGACGACTATTTTCAGCTCCTCAATCTCAATCGACTGCTTCAAAAAACGGCTGCTGAATTGACGACCAACCAGTGATTCATCATTCTTTTTTGTATAAAATTTTGAAAATTTTGAACTTAATGATAAATTGTGATATTTGATTGATTTTGTTCTTTCTGTCTACAGTTTGAAAAAACACTATTAAAGGAGGCGAAAAAAATTTCGGGGGCAGTTCGGGGGACGAAATCGCGCCGCGCTTATGTAGACCATCGGTCGTCAGGCGCCTTCGCACCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCATGAGTTCAACTCCTCATGGGGGTTCTCTATGCAAAATATCAGGAAAACTTTTTTTTTTGGTGTCTGGCCTCCTTTAAGAAATGTCGCTCAGAACCTCCAAAATCAGCTAATTATCGATCAATGCCATTTTTGAAGTCTTACAAAAGGGGTCCAG</canonical>
            <polymorphic>TGGCCAACGAAAACCGAAAATCCCGAATCTTGCAGACCAATGCAAACCCAAGACCATCGTGACGCCTTCGTTTCGTATATGAATGATGTTCGTACGCAACTGGGTGAATATCATTGGAAAGCCACTCTCACCCAAGGGAATATGGACGTTGAGAAAACGGGATTGGCTCAAATTCGAACGGCGCTGAGAGCAAAAGAACGAGAAGTGGCGAATACGACGTTGGAGATGAAAAAGGTACTGTAGGTAGATTCCCGTAAGAGATATCAAAAAGTAGTCAACCGATAAAAGATTTGTGATATTATGATAAACATTTTATCAGTTTACCACTTTTTGATATCTTTGATATGAGCCGAGATAAATTGGTTCGAAGTTAACCCTTTAACTTTGACCCATTATAGCTCAATTACTAGAAGAGATATCAAAATGGTGTCAACTGATAAAATGTTTATTATAAAATCCTTAACATTTTATCAGTTGACCACTTTTCGGTATCAGTTACKGTAACCGAGATAAATTGGCTCAAAATAGACGACTATTTTCAGCTCCTCAATCTCAATCGACTGCTTCAAAAAACGGCTGCTGAATTGACGACCAACCAGTGATTCATCATTCTTTTTTGTATAAAATTTTGAAAATTTTGAACTTAATGATAAATTGTGATATTTGATTGATTTTGTTCTTTCTGTCTACAGTTTGAAAAAACACTATTAAAGGAGGCGAAAAAAATTTCGGGGGCAGTTCGGGGGACGAAATCGCGCCGCGCTTATGTAGACCATCGGTCGTCAGGCGCCTTCGCACCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCATGAGTTCAACTCCTCATGGGGGTTCTCTATGCAAAATATCAGGAAAACTTTTTTTTTTGGTGTCTGGCCTCCTTTAAGAAATGTCGCTCAGAACCTCCAAAATCAGCTAATTATCGATCAATGCCATTTTTGAAGTCTTACAAAAGGGGTCCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAGATGAAAAAGGTACTGTAG</pcr_primer_p1>
		<pcr_primer_p2>GAGATTGAGGAGCTGAAAATAGT</pcr_primer_p2>
		<pcr_amplicon_size>334</pcr_amplicon_size>
		<canonical_amplicon>TGGAGATGAAAAAGGTACTGTAGGTAGATTCCCGTAAGAGATATCAAAAAGTAGTCAACCGATAAAAGATTTGTGATATTATGATAAACATTTTATCAGTTTACCACTTTTTGATATCTTTGATATGAGCCGAGATAAATTGGTTCGAAGTTAACCCTTTAACTTTGACCCATTATAGCTCAATTACTAGAAGAGATATCAAAATGGTGTCAACTGATAAAATGTTTATTATAAAATCCTTAACATTTTATCAGTTGACCACTTTTCGGTATCAGTTACAGTAACCGAGATAAATTGGCTCAAAATAGACGACTATTTTCAGCTCCTCAATCTC</canonical_amplicon>
		<polymorphic_amplicon>TGGAGATGAAAAAGGTACTGTAGGTAGATTCCCGTAAGAGATATCAAAAAGTAGTCAACCGATAAAAGATTTGTGATATTATGATAAACATTTTATCAGTTTACCACTTTTTGATATCTTTGATATGAGCCGAGATAAATTGGTTCGAAGTTAACCCTTTAACTTTGACCCATTATAGCTCAATTACTAGAAGAGATATCAAAATGGTGTCAACTGATAAAATGTTTATTATAAAATCCTTAACATTTTATCAGTTGACCACTTTTCGGTATCAGTTACKGTAACCGAGATAAATTGGCTCAAAATAGACGACTATTTTCAGCTCCTCAATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26355</snp_id>
        <super_contig>c002300133.Contig3</super_contig>
        <contig_pos>20829</contig_pos>
        <strand></strand>
        <context>GTTCAAAAAT[T/G]TTTTGAATCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CTAGTTTCCTGGAAATAATCCCAAATTTTTTTTGGAAAATGTTCAAAAAT</left_flank>
        <right_flank>TTTTGAATCTAATGAAATTTTGAAACATCCGTGTACTGGTTTCGGAAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGGTTTTTTTCATTTTTTAACGACAGGCAAGTCAGACCTGAGCCGCTTCAGCGAGACGGTTCTCCCTCACCTAGTTATAGTCCTGACTTGACTCTATCAAATTATAGGTTATTCGGAGATATACGAAGTCATCTATAGGGTGATGAATTTTGCACCATTTATGAGAAAAAACTAAAAAAAAAAGAATTCTTCGATCCGCGGCTAGCTCGCTTATGGAGGAAGGGTATCCACAAGATACCTGAATGTTGCCAACATGCTATGGACCACGACGGTGCATACTGCTAATCTTGGATTAACCTGGTTTTTTAATTATTCACAATTAAAACAAGGGACAGTTACTTCAATAAAACTGAAAATTAAAAAAAAAGTTTCTAGAAAAGAACCCAAGAAAATAATAAGTTTGTTGATTTTTGAAGCATAAAACGTATGAAACGCTACAAAAAATTTTCTAGTTTCCTGGAAATAATCCCAAATTTTTTTTGGAAAATGTTCAAAAATTTTTTGAATCTAATGAAATTTTGAAACATCCGTGTACTGGTTTCGGAAATTGAAAGATTCATTTATAATGGAAAACGAATACATTGTTTATTTAAATAGATAAAGAATATGAAAATGATCTTCAGAATTCAAATCCTGTGTCTCCCTGGATCTGGACTCACTCTCGTTGTTGCTTCAGGTTTTATTAATTCTTTAACGAGTTTCATTCCTTTGAATGAAGCAAATAGAGTGATAACATTTTGTCTGTTACAAGTCAGGTAAGATATCTGAATGATAACTGGAATAGAAAATACATCCCATATACGAGTGGAAATAATCATAGTTTTGAAGTTGTCAAAATGAATAAATAAAAAATAAGGTGTGTATATCTTTAATAAATGCGAGGGTATTGGACTTTTGGATTCTTGCAATCTTACCATTTTTACAACCAAAACAGTAATTGTTTGCGAGAAAATGTAAATTTGAGGTTTCGATTCCTGAACTGATCTCAGATGGGACTTC</canonical>
            <polymorphic>GCGGTTTTTTTCATTTTTTAACGACAGGCAAGTCAGACCTGAGCCGCTTCAGCGAGACGGTTCTCCCTCACCTAGTTATAGTCCTGACTTGACTCTATCAAATTATAGGTTATTCGGAGATATACGAAGTCATCTATAGGGTGATGAATTTTGCACCATTTATGAGAAAAAACTAAAAAAAAAAGAATTCTTCGATCCGCGGCTAGCTCGCTTATGGAGGAAGGGTATCCACAAGATACCTGAATGTTGCCAACATGCTATGGACCACGACGGTGCATACTGCTAATCTTGGATTAACCTGGTTTTTTAATTATTCACAATTAAAACAAGGGACAGTTACTTCAATAAAACTGAAAATTAAAAAAAAAGTTTCTAGAAAAGAACCCAAGAAAATAATAAGTTTGTTGATTTTTGAAGCATAAAACGTATGAAACGCTACAAAAAATTTTCTAGTTTCCTGGAAATAATCCCAAATTTTTTTTGGAAAATGTTCAAAAATKTTTTGAATCTAATGAAATTTTGAAACATCCGTGTACTGGTTTCGGAAATTGAAAGATTCATTTATAATGGAAAACGAATACATTGTTTATTTAAATAGATAAAGAATATGAAAATGATCTTCAGAATTCAAATCCTGTGTCTCCCTGGATCTGGACTCACTCTCGTTGTTGCTTCAGGTTTTATTAATTCTTTAACGAGTTTCATTCCTTTGAATGAAGCAAATAGAGTGATAACATTTTGTCTGTTACAAGTCAGGTAAGATATCTGAATGATAACTGGAATAGAAAATACATCCCATATACGAGTGGAAATAATCATAGTTTTGAAGTTGTCAAAATGAATAAATAAAAAATAAGGTGTGTATATCTTTAATAAATGCGAGGGTATTGGACTTTTGGATTCTTGCAATCTTACCATTTTTACAACCAAAACAGTAATTGTTTGCGAGAAAATGTAAATTTGAGGTTTCGATTCCTGAACTGATCTCAGATGGGACTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>333 258 146 109 43 39 29 24 19</canonical_bands>
                <polymorphic_bands>333 258 146 109 43 43 39 29</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>251 123 100 88 78 61 46 43 39 37 31 29 24 21 19 10</canonical_bands>
                <polymorphic_bands>251 123 100 88 78 61 46 43 43 39 37 31 29 21 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAAACGTATGAAACGCTACAA</pcr_primer_p1>
		<pcr_primer_p2>CAACGAGAGTGAGTCCAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAAAACGTATGAAACGCTACAAAAAATTTTCTAGTTTCCTGGAAATAATCCCAAATTTTTTTTGGAAAATGTTCAAAAATTTTTTGAATCTAATGAAATTTTGAAACATCCGTGTACTGGTTTCGGAAATTGAAAGATTCATTTATAATGGAAAACGAATACATTGTTTATTTAAATAGATAAAGAATATGAAAATGATCTTCAGAATTCAAATCCTGTGTCTCCCTGGATCTGGACTCACTCTCGTTG</canonical_amplicon>
		<polymorphic_amplicon>ATAAAACGTATGAAACGCTACAAAAAATTTTCTAGTTTCCTGGAAATAATCCCAAATTTTTTTTGGAAAATGTTCAAAAATKTTTTGAATCTAATGAAATTTTGAAACATCCGTGTACTGGTTTCGGAAATTGAAAGATTCATTTATAATGGAAAACGAATACATTGTTTATTTAAATAGATAAAGAATATGAAAATGATCTTCAGAATTCAAATCCTGTGTCTCCCTGGATCTGGACTCACTCTCGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26356</snp_id>
        <super_contig>c002300133.Contig3</super_contig>
        <contig_pos>20941</contig_pos>
        <strand></strand>
        <context>AAGAATATGA[A/C]AATGATCTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTATAATGGAAAACGAATACATTGTTTATTTAAATAGATAAAGAATATGA</left_flank>
        <right_flank>AATGATCTTCAGAATTCAAATCCTGTGTCTCCCTGGATCTGGACTCACTC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGGAGATATACGAAGTCATCTATAGGGTGATGAATTTTGCACCATTTATGAGAAAAAACTAAAAAAAAAAGAATTCTTCGATCCGCGGCTAGCTCGCTTATGGAGGAAGGGTATCCACAAGATACCTGAATGTTGCCAACATGCTATGGACCACGACGGTGCATACTGCTAATCTTGGATTAACCTGGTTTTTTAATTATTCACAATTAAAACAAGGGACAGTTACTTCAATAAAACTGAAAATTAAAAAAAAAGTTTCTAGAAAAGAACCCAAGAAAATAATAAGTTTGTTGATTTTTGAAGCATAAAACGTATGAAACGCTACAAAAAATTTTCTAGTTTCCTGGAAATAATCCCAAATTTTTTTTGGAAAATGTTCAAAAATTTTTTGAATCTAATGAAATTTTGAAACATCCGTGTACTGGTTTCGGAAATTGAAAGATTCATTTATAATGGAAAACGAATACATTGTTTATTTAAATAGATAAAGAATATGAAAATGATCTTCAGAATTCAAATCCTGTGTCTCCCTGGATCTGGACTCACTCTCGTTGTTGCTTCAGGTTTTATTAATTCTTTAACGAGTTTCATTCCTTTGAATGAAGCAAATAGAGTGATAACATTTTGTCTGTTACAAGTCAGGTAAGATATCTGAATGATAACTGGAATAGAAAATACATCCCATATACGAGTGGAAATAATCATAGTTTTGAAGTTGTCAAAATGAATAAATAAAAAATAAGGTGTGTATATCTTTAATAAATGCGAGGGTATTGGACTTTTGGATTCTTGCAATCTTACCATTTTTACAACCAAAACAGTAATTGTTTGCGAGAAAATGTAAATTTGAGGTTTCGATTCCTGAACTGATCTCAGATGGGACTTCTTTTGAACACTTATCAATATAGGGATGTACAGAAGAGCAGAAATAAAGAAAGATATATTAAGTGTAGCGAAACATATCTTAATGAAGAGAAAGAATTAATTTCCATGAGAAC</canonical>
            <polymorphic>TTCGGAGATATACGAAGTCATCTATAGGGTGATGAATTTTGCACCATTTATGAGAAAAAACTAAAAAAAAAAGAATTCTTCGATCCGCGGCTAGCTCGCTTATGGAGGAAGGGTATCCACAAGATACCTGAATGTTGCCAACATGCTATGGACCACGACGGTGCATACTGCTAATCTTGGATTAACCTGGTTTTTTAATTATTCACAATTAAAACAAGGGACAGTTACTTCAATAAAACTGAAAATTAAAAAAAAAGTTTCTAGAAAAGAACCCAAGAAAATAATAAGTTTGTTGATTTTTGAAGCATAAAACGTATGAAACGCTACAAAAAATTTTCTAGTTTCCTGGAAATAATCCCAAATTTTTTTTGGAAAATGTTCAAAAATTTTTTGAATCTAATGAAATTTTGAAACATCCGTGTACTGGTTTCGGAAATTGAAAGATTCATTTATAATGGAAAACGAATACATTGTTTATTTAAATAGATAAAGAATATGAMAATGATCTTCAGAATTCAAATCCTGTGTCTCCCTGGATCTGGACTCACTCTCGTTGTTGCTTCAGGTTTTATTAATTCTTTAACGAGTTTCATTCCTTTGAATGAAGCAAATAGAGTGATAACATTTTGTCTGTTACAAGTCAGGTAAGATATCTGAATGATAACTGGAATAGAAAATACATCCCATATACGAGTGGAAATAATCATAGTTTTGAAGTTGTCAAAATGAATAAATAAAAAATAAGGTGTGTATATCTTTAATAAATGCGAGGGTATTGGACTTTTGGATTCTTGCAATCTTACCATTTTTACAACCAAAACAGTAATTGTTTGCGAGAAAATGTAAATTTGAGGTTTCGATTCCTGAACTGATCTCAGATGGGACTTCTTTTGAACACTTATCAATATAGGGATGTACAGAAGAGCAGAAATAAAGAAAGATATATTAAGTGTAGCGAAACATATCTTAATGAAGAGAAAGAATTAATTTCCATGAGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCATTTATAATGGAAAACGAATA</pcr_primer_p1>
		<pcr_primer_p2>CACTCGTATATGGGATGTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTCATTTATAATGGAAAACGAATACATTGTTTATTTAAATAGATAAAGAATATGAAAATGATCTTCAGAATTCAAATCCTGTGTCTCCCTGGATCTGGACTCACTCTCGTTGTTGCTTCAGGTTTTATTAATTCTTTAACGAGTTTCATTCCTTTGAATGAAGCAAATAGAGTGATAACATTTTGTCTGTTACAAGTCAGGTAAGATATCTGAATGATAACTGGAATAGAAAATACATCCCATATACGAGTG</canonical_amplicon>
		<polymorphic_amplicon>TTCATTTATAATGGAAAACGAATACATTGTTTATTTAAATAGATAAAGAATATGAMAATGATCTTCAGAATTCAAATCCTGTGTCTCCCTGGATCTGGACTCACTCTCGTTGTTGCTTCAGGTTTTATTAATTCTTTAACGAGTTTCATTCCTTTGAATGAAGCAAATAGAGTGATAACATTTTGTCTGTTACAAGTCAGGTAAGATATCTGAATGATAACTGGAATAGAAAATACATCCCATATACGAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26357</snp_id>
        <super_contig>c002300133.Contig3</super_contig>
        <contig_pos>44064</contig_pos>
        <strand></strand>
        <context>TGCTCCAAAA[G/A]AAGCTCCAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAAATTCAAAAATACAAATTTCAGATTCAATTTCTCCCATTGCTCCAAAA</left_flank>
        <right_flank>AAGCTCCAAAAGGCTTCGTCGAGTGAAATCCAAAAAGTTCTCAGTGACCC</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTAATTTTCTGGAAATTTGAGTTTTAAATTTAAGTTATTTTTAGAAAAAAATTTGAGTTATTTTTAGAAAAATTTTGAATTTTTGTTTTTCAGCAAATTTAAGATTTTCTGAAGGGTTTTTTTTTCAGAAATCCAGAAATTCAAAATACCAGAATTTAAGAATTCCAGAAATTTAGAATTCCAAAATTTGAAAATTCCAGAAATTCGAAAATCCAGGAATCTAGAAATCAAAAAATTCAGATATTCAGAAACCCAGAAACCCAGAAATCTAGAATTCGAGAAATCCGAAATTCCAGAGAATCGAAATTCCACAAATCCATAAATCCAGAAGTTCAGGATTCCAGATATTCAGAATTTCAGAAATCTAGGATTCCAGACACCCAGAATACCAGAAATTCAGAAGTCCAGAACTCCAGAAATCCAAAATCTCAGGAATTCAGAATTCCAGAAATTCAAAAATACAAATTTCAGATTCAATTTCTCCCATTGCTCCAAAAGAAGCTCCAAAAGGCTTCGTCGAGTGAAATCCAAAAAGTTCTCAGTGACCCTAAATTTCTCTTTGGACACAATTGGTTTCGACAATTCCCATTTCTTCCGGTCCTACGAAAAGAATTGGATGTGGAAATATCAAAAATGGGAATTTCGAAATTACGGAGAAATTCAAATTCCCACAATTTTCGAAAACAAAAATGTCATTAGTTTTTGGAACAATGTGCATTATGGGCTCAAGGATATGTTCATTCATTTGAACGAAATCTTAAATTGCTCAGTTTTATCGATTGAATCAGATGAGAGAACTCCAGATGAGGCGTTGATGATGGCTCTTGAATTTTTGAGCTGGAAAAATCAAACTTCGATTCGAAAATTGGAAATTGGAAGTTTCGAATGTGATCTTAAAGAAATTCTTGAAGCTATAGAGGTCACAGAAACCCTGAAAATCACCTCTGAATTCGAAATACATCCCGGAGATTTTGAATTTTATTCAAAATCTGCTACTA</canonical>
            <polymorphic>TTCTAATTTTCTGGAAATTTGAGTTTTAAATTTAAGTTATTTTTAGAAAAAAATTTGAGTTATTTTTAGAAAAATTTTGAATTTTTGTTTTTCAGCAAATTTAAGATTTTCTGAAGGGTTTTTTTTTCAGAAATCCAGAAATTCAAAATACCAGAATTTAAGAATTCCAGAAATTTAGAATTCCAAAATTTGAAAATTCCAGAAATTCGAAAATCCAGGAATCTAGAAATCAAAAAATTCAGATATTCAGAAACCCAGAAACCCAGAAATCTAGAATTCGAGAAATCCGAAATTCCAGAGAATCGAAATTCCACAAATCCATAAATCCAGAAGTTCAGGATTCCAGATATTCAGAATTTCAGAAATCTAGGATTCCAGACACCCAGAATACCAGAAATTCAGAAGTCCAGAACTCCAGAAATCCAAAATCTCAGGAATTCAGAATTCCAGAAATTCAAAAATACAAATTTCAGATTCAATTTCTCCCATTGCTCCAAAARAAGCTCCAAAAGGCTTCGTCGAGTGAAATCCAAAAAGTTCTCAGTGACCCTAAATTTCTCTTTGGACACAATTGGTTTCGACAATTCCCATTTCTTCCGGTCCTACGAAAAGAATTGGATGTGGAAATATCAAAAATGGGAATTTCGAAATTACGGAGAAATTCAAATTCCCACAATTTTCGAAAACAAAAATGTCATTAGTTTTTGGAACAATGTGCATTATGGGCTCAAGGATATGTTCATTCATTTGAACGAAATCTTAAATTGCTCAGTTTTATCGATTGAATCAGATGAGAGAACTCCAGATGAGGCGTTGATGATGGCTCTTGAATTTTTGAGCTGGAAAAATCAAACTTCGATTCGAAAATTGGAAATTGGAAGTTTCGAATGTGATCTTAAAGAAATTCTTGAAGCTATAGAGGTCACAGAAACCCTGAAAATCACCTCTGAATTCGAAATACATCCCGGAGATTTTGAATTTTATTCAAAATCTGCTACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAATTCAGAAGTCCAGAACTC</pcr_primer_p1>
		<pcr_primer_p2>CCATTTTTGATATTTCCACATC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGAAATTCAGAAGTCCAGAACTCCAGAAATCCAAAATCTCAGGAATTCAGAATTCCAGAAATTCAAAAATACAAATTTCAGATTCAATTTCTCCCATTGCTCCAAAAGAAGCTCCAAAAGGCTTCGTCGAGTGAAATCCAAAAAGTTCTCAGTGACCCTAAATTTCTCTTTGGACACAATTGGTTTCGACAATTCCCATTTCTTCCGGTCCTACGAAAAGAATTGGATGTGGAAATATCAAAAATGG</canonical_amplicon>
		<polymorphic_amplicon>AGAAATTCAGAAGTCCAGAACTCCAGAAATCCAAAATCTCAGGAATTCAGAATTCCAGAAATTCAAAAATACAAATTTCAGATTCAATTTCTCCCATTGCTCCAAAARAAGCTCCAAAAGGCTTCGTCGAGTGAAATCCAAAAAGTTCTCAGTGACCCTAAATTTCTCTTTGGACACAATTGGTTTCGACAATTCCCATTTCTTCCGGTCCTACGAAAAGAATTGGATGTGGAAATATCAAAAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26358</snp_id>
        <super_contig>c002300133.Contig3</super_contig>
        <contig_pos>44126</contig_pos>
        <strand></strand>
        <context>AAATTTCTCT[T/C]TGGACACAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGCTTCGTCGAGTGAAATCCAAAAAGTTCTCAGTGACCCTAAATTTCTCT</left_flank>
        <right_flank>TGGACACAATTGGTTTCGACAATTCCCATTTCTTCCGGTCCTACGAAAAG</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTAGAAAAATTTTGAATTTTTGTTTTTCAGCAAATTTAAGATTTTCTGAAGGGTTTTTTTTTCAGAAATCCAGAAATTCAAAATACCAGAATTTAAGAATTCCAGAAATTTAGAATTCCAAAATTTGAAAATTCCAGAAATTCGAAAATCCAGGAATCTAGAAATCAAAAAATTCAGATATTCAGAAACCCAGAAACCCAGAAATCTAGAATTCGAGAAATCCGAAATTCCAGAGAATCGAAATTCCACAAATCCATAAATCCAGAAGTTCAGGATTCCAGATATTCAGAATTTCAGAAATCTAGGATTCCAGACACCCAGAATACCAGAAATTCAGAAGTCCAGAACTCCAGAAATCCAAAATCTCAGGAATTCAGAATTCCAGAAATTCAAAAATACAAATTTCAGATTCAATTTCTCCCATTGCTCCAAAAGAAGCTCCAAAAGGCTTCGTCGAGTGAAATCCAAAAAGTTCTCAGTGACCCTAAATTTCTCTTTGGACACAATTGGTTTCGACAATTCCCATTTCTTCCGGTCCTACGAAAAGAATTGGATGTGGAAATATCAAAAATGGGAATTTCGAAATTACGGAGAAATTCAAATTCCCACAATTTTCGAAAACAAAAATGTCATTAGTTTTTGGAACAATGTGCATTATGGGCTCAAGGATATGTTCATTCATTTGAACGAAATCTTAAATTGCTCAGTTTTATCGATTGAATCAGATGAGAGAACTCCAGATGAGGCGTTGATGATGGCTCTTGAATTTTTGAGCTGGAAAAATCAAACTTCGATTCGAAAATTGGAAATTGGAAGTTTCGAATGTGATCTTAAAGAAATTCTTGAAGCTATAGAGGTCACAGAAACCCTGAAAATCACCTCTGAATTCGAAATACATCCCGGAGATTTTGAATTTTATTCAAAATCTGCTACTATTAAAAATTCGTGGTGGATCGAGAACTTGGAACCCTTCAAAAACTGTGTGGAAATTGAATTA</canonical>
            <polymorphic>TTTTTAGAAAAATTTTGAATTTTTGTTTTTCAGCAAATTTAAGATTTTCTGAAGGGTTTTTTTTTCAGAAATCCAGAAATTCAAAATACCAGAATTTAAGAATTCCAGAAATTTAGAATTCCAAAATTTGAAAATTCCAGAAATTCGAAAATCCAGGAATCTAGAAATCAAAAAATTCAGATATTCAGAAACCCAGAAACCCAGAAATCTAGAATTCGAGAAATCCGAAATTCCAGAGAATCGAAATTCCACAAATCCATAAATCCAGAAGTTCAGGATTCCAGATATTCAGAATTTCAGAAATCTAGGATTCCAGACACCCAGAATACCAGAAATTCAGAAGTCCAGAACTCCAGAAATCCAAAATCTCAGGAATTCAGAATTCCAGAAATTCAAAAATACAAATTTCAGATTCAATTTCTCCCATTGCTCCAAAAGAAGCTCCAAAAGGCTTCGTCGAGTGAAATCCAAAAAGTTCTCAGTGACCCTAAATTTCTCTYTGGACACAATTGGTTTCGACAATTCCCATTTCTTCCGGTCCTACGAAAAGAATTGGATGTGGAAATATCAAAAATGGGAATTTCGAAATTACGGAGAAATTCAAATTCCCACAATTTTCGAAAACAAAAATGTCATTAGTTTTTGGAACAATGTGCATTATGGGCTCAAGGATATGTTCATTCATTTGAACGAAATCTTAAATTGCTCAGTTTTATCGATTGAATCAGATGAGAGAACTCCAGATGAGGCGTTGATGATGGCTCTTGAATTTTTGAGCTGGAAAAATCAAACTTCGATTCGAAAATTGGAAATTGGAAGTTTCGAATGTGATCTTAAAGAAATTCTTGAAGCTATAGAGGTCACAGAAACCCTGAAAATCACCTCTGAATTCGAAATACATCCCGGAGATTTTGAATTTTATTCAAAATCTGCTACTATTAAAAATTCGTGGTGGATCGAGAACTTGGAACCCTTCAAAAACTGTGTGGAAATTGAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAATTCAGAAGTCCAGAACTC</pcr_primer_p1>
		<pcr_primer_p2>CCATTTTTGATATTTCCACATC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGAAATTCAGAAGTCCAGAACTCCAGAAATCCAAAATCTCAGGAATTCAGAATTCCAGAAATTCAAAAATACAAATTTCAGATTCAATTTCTCCCATTGCTCCAAAAGAAGCTCCAAAAGGCTTCGTCGAGTGAAATCCAAAAAGTTCTCAGTGACCCTAAATTTCTCTTTGGACACAATTGGTTTCGACAATTCCCATTTCTTCCGGTCCTACGAAAAGAATTGGATGTGGAAATATCAAAAATGG</canonical_amplicon>
		<polymorphic_amplicon>AGAAATTCAGAAGTCCAGAACTCCAGAAATCCAAAATCTCAGGAATTCAGAATTCCAGAAATTCAAAAATACAAATTTCAGATTCAATTTCTCCCATTGCTCCAAAAGAAGCTCCAAAAGGCTTCGTCGAGTGAAATCCAAAAAGTTCTCAGTGACCCTAAATTTCTCTYTGGACACAATTGGTTTCGACAATTCCCATTTCTTCCGGTCCTACGAAAAGAATTGGATGTGGAAATATCAAAAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26359</snp_id>
        <super_contig>c002300133.Contig3</super_contig>
        <contig_pos>44173</contig_pos>
        <strand></strand>
        <context>GGTCCTACGA[A/G]AAGAATTGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTTGGACACAATTGGTTTCGACAATTCCCATTTCTTCCGGTCCTACGA</left_flank>
        <right_flank>AAGAATTGGATGTGGAAATATCAAAAATGGGAATTTCGAAATTACGGAGA</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGAAGGGTTTTTTTTTCAGAAATCCAGAAATTCAAAATACCAGAATTTAAGAATTCCAGAAATTTAGAATTCCAAAATTTGAAAATTCCAGAAATTCGAAAATCCAGGAATCTAGAAATCAAAAAATTCAGATATTCAGAAACCCAGAAACCCAGAAATCTAGAATTCGAGAAATCCGAAATTCCAGAGAATCGAAATTCCACAAATCCATAAATCCAGAAGTTCAGGATTCCAGATATTCAGAATTTCAGAAATCTAGGATTCCAGACACCCAGAATACCAGAAATTCAGAAGTCCAGAACTCCAGAAATCCAAAATCTCAGGAATTCAGAATTCCAGAAATTCAAAAATACAAATTTCAGATTCAATTTCTCCCATTGCTCCAAAAGAAGCTCCAAAAGGCTTCGTCGAGTGAAATCCAAAAAGTTCTCAGTGACCCTAAATTTCTCTTTGGACACAATTGGTTTCGACAATTCCCATTTCTTCCGGTCCTACGAAAAGAATTGGATGTGGAAATATCAAAAATGGGAATTTCGAAATTACGGAGAAATTCAAATTCCCACAATTTTCGAAAACAAAAATGTCATTAGTTTTTGGAACAATGTGCATTATGGGCTCAAGGATATGTTCATTCATTTGAACGAAATCTTAAATTGCTCAGTTTTATCGATTGAATCAGATGAGAGAACTCCAGATGAGGCGTTGATGATGGCTCTTGAATTTTTGAGCTGGAAAAATCAAACTTCGATTCGAAAATTGGAAATTGGAAGTTTCGAATGTGATCTTAAAGAAATTCTTGAAGCTATAGAGGTCACAGAAACCCTGAAAATCACCTCTGAATTCGAAATACATCCCGGAGATTTTGAATTTTATTCAAAATCTGCTACTATTAAAAATTCGTGGTGGATCGAGAACTTGGAACCCTTCAAAAACTGTGTGGAAATTGAATTATCGGAATCTGAAATTTCCAATCAATCAATTATCGATTTTTATGGAGA</canonical>
            <polymorphic>TCTGAAGGGTTTTTTTTTCAGAAATCCAGAAATTCAAAATACCAGAATTTAAGAATTCCAGAAATTTAGAATTCCAAAATTTGAAAATTCCAGAAATTCGAAAATCCAGGAATCTAGAAATCAAAAAATTCAGATATTCAGAAACCCAGAAACCCAGAAATCTAGAATTCGAGAAATCCGAAATTCCAGAGAATCGAAATTCCACAAATCCATAAATCCAGAAGTTCAGGATTCCAGATATTCAGAATTTCAGAAATCTAGGATTCCAGACACCCAGAATACCAGAAATTCAGAAGTCCAGAACTCCAGAAATCCAAAATCTCAGGAATTCAGAATTCCAGAAATTCAAAAATACAAATTTCAGATTCAATTTCTCCCATTGCTCCAAAAGAAGCTCCAAAAGGCTTCGTCGAGTGAAATCCAAAAAGTTCTCAGTGACCCTAAATTTCTCTTTGGACACAATTGGTTTCGACAATTCCCATTTCTTCCGGTCCTACGARAAGAATTGGATGTGGAAATATCAAAAATGGGAATTTCGAAATTACGGAGAAATTCAAATTCCCACAATTTTCGAAAACAAAAATGTCATTAGTTTTTGGAACAATGTGCATTATGGGCTCAAGGATATGTTCATTCATTTGAACGAAATCTTAAATTGCTCAGTTTTATCGATTGAATCAGATGAGAGAACTCCAGATGAGGCGTTGATGATGGCTCTTGAATTTTTGAGCTGGAAAAATCAAACTTCGATTCGAAAATTGGAAATTGGAAGTTTCGAATGTGATCTTAAAGAAATTCTTGAAGCTATAGAGGTCACAGAAACCCTGAAAATCACCTCTGAATTCGAAATACATCCCGGAGATTTTGAATTTTATTCAAAATCTGCTACTATTAAAAATTCGTGGTGGATCGAGAACTTGGAACCCTTCAAAAACTGTGTGGAAATTGAATTATCGGAATCTGAAATTTCCAATCAATCAATTATCGATTTTTATGGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGTTCTCAGTGACCCTAA</pcr_primer_p1>
		<pcr_primer_p2>CGATAAAACTGAGCAATTTAAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGTTCTCAGTGACCCTAAATTTCTCTTTGGACACAATTGGTTTCGACAATTCCCATTTCTTCCGGTCCTACGAAAAGAATTGGATGTGGAAATATCAAAAATGGGAATTTCGAAATTACGGAGAAATTCAAATTCCCACAATTTTCGAAAACAAAAATGTCATTAGTTTTTGGAACAATGTGCATTATGGGCTCAAGGATATGTTCATTCATTTGAACGAAATCTTAAATTGCTCAGTTTTATCG</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGTTCTCAGTGACCCTAAATTTCTCTTTGGACACAATTGGTTTCGACAATTCCCATTTCTTCCGGTCCTACGARAAGAATTGGATGTGGAAATATCAAAAATGGGAATTTCGAAATTACGGAGAAATTCAAATTCCCACAATTTTCGAAAACAAAAATGTCATTAGTTTTTGGAACAATGTGCATTATGGGCTCAAGGATATGTTCATTCATTTGAACGAAATCTTAAATTGCTCAGTTTTATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26360</snp_id>
        <super_contig>c002300133.Contig3</super_contig>
        <contig_pos>44392</contig_pos>
        <strand></strand>
        <context>TGATGGCTCT[T/G]GAATTTTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TCGATTGAATCAGATGAGAGAACTCCAGATGAGGCGTTGATGATGGCTCT</left_flank>
        <right_flank>GAATTTTTGAGCTGGAAAAATCAAACTTCGATTCGAAAATTGGAAATTGG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAGTTCAGGATTCCAGATATTCAGAATTTCAGAAATCTAGGATTCCAGACACCCAGAATACCAGAAATTCAGAAGTCCAGAACTCCAGAAATCCAAAATCTCAGGAATTCAGAATTCCAGAAATTCAAAAATACAAATTTCAGATTCAATTTCTCCCATTGCTCCAAAAGAAGCTCCAAAAGGCTTCGTCGAGTGAAATCCAAAAAGTTCTCAGTGACCCTAAATTTCTCTTTGGACACAATTGGTTTCGACAATTCCCATTTCTTCCGGTCCTACGAAAAGAATTGGATGTGGAAATATCAAAAATGGGAATTTCGAAATTACGGAGAAATTCAAATTCCCACAATTTTCGAAAACAAAAATGTCATTAGTTTTTGGAACAATGTGCATTATGGGCTCAAGGATATGTTCATTCATTTGAACGAAATCTTAAATTGCTCAGTTTTATCGATTGAATCAGATGAGAGAACTCCAGATGAGGCGTTGATGATGGCTCTTGAATTTTTGAGCTGGAAAAATCAAACTTCGATTCGAAAATTGGAAATTGGAAGTTTCGAATGTGATCTTAAAGAAATTCTTGAAGCTATAGAGGTCACAGAAACCCTGAAAATCACCTCTGAATTCGAAATACATCCCGGAGATTTTGAATTTTATTCAAAATCTGCTACTATTAAAAATTCGTGGTGGATCGAGAACTTGGAACCCTTCAAAAACTGTGTGGAAATTGAATTATCGGAATCTGAAATTTCCAATCAATCAATTATCGATTTTTATGGAGAATGGACTGCTGGAAGCTATAGTAATCTTAGATGGTTATCGGTGAAGAGTGAAAACTTGAACGAGGACTTGAAATTGAATGGAGTCCCTTTTTTGAAGGATCAAAAGGATTTGAGAACCAGTATAGAAAAATTGTGAGTTTTAGAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAA</canonical>
            <polymorphic>AGAAGTTCAGGATTCCAGATATTCAGAATTTCAGAAATCTAGGATTCCAGACACCCAGAATACCAGAAATTCAGAAGTCCAGAACTCCAGAAATCCAAAATCTCAGGAATTCAGAATTCCAGAAATTCAAAAATACAAATTTCAGATTCAATTTCTCCCATTGCTCCAAAAGAAGCTCCAAAAGGCTTCGTCGAGTGAAATCCAAAAAGTTCTCAGTGACCCTAAATTTCTCTTTGGACACAATTGGTTTCGACAATTCCCATTTCTTCCGGTCCTACGAAAAGAATTGGATGTGGAAATATCAAAAATGGGAATTTCGAAATTACGGAGAAATTCAAATTCCCACAATTTTCGAAAACAAAAATGTCATTAGTTTTTGGAACAATGTGCATTATGGGCTCAAGGATATGTTCATTCATTTGAACGAAATCTTAAATTGCTCAGTTTTATCGATTGAATCAGATGAGAGAACTCCAGATGAGGCGTTGATGATGGCTCTKGAATTTTTGAGCTGGAAAAATCAAACTTCGATTCGAAAATTGGAAATTGGAAGTTTCGAATGTGATCTTAAAGAAATTCTTGAAGCTATAGAGGTCACAGAAACCCTGAAAATCACCTCTGAATTCGAAATACATCCCGGAGATTTTGAATTTTATTCAAAATCTGCTACTATTAAAAATTCGTGGTGGATCGAGAACTTGGAACCCTTCAAAAACTGTGTGGAAATTGAATTATCGGAATCTGAAATTTCCAATCAATCAATTATCGATTTTTATGGAGAATGGACTGCTGGAAGCTATAGTAATCTTAGATGGTTATCGGTGAAGAGTGAAAACTTGAACGAGGACTTGAAATTGAATGGAGTCCCTTTTTTGAAGGATCAAAAGGATTTGAGAACCAGTATAGAAAAATTGTGAGTTTTAGAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGAAAACAAAAATGTCATTAG</pcr_primer_p1>
		<pcr_primer_p2>CTGTGACCTCTATAGCTTCAAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCGAAAACAAAAATGTCATTAGTTTTTGGAACAATGTGCATTATGGGCTCAAGGATATGTTCATTCATTTGAACGAAATCTTAAATTGCTCAGTTTTATCGATTGAATCAGATGAGAGAACTCCAGATGAGGCGTTGATGATGGCTCTTGAATTTTTGAGCTGGAAAAATCAAACTTCGATTCGAAAATTGGAAATTGGAAGTTTCGAATGTGATCTTAAAGAAATTCTTGAAGCTATAGAGGTCACAG</canonical_amplicon>
		<polymorphic_amplicon>TTCGAAAACAAAAATGTCATTAGTTTTTGGAACAATGTGCATTATGGGCTCAAGGATATGTTCATTCATTTGAACGAAATCTTAAATTGCTCAGTTTTATCGATTGAATCAGATGAGAGAACTCCAGATGAGGCGTTGATGATGGCTCTKGAATTTTTGAGCTGGAAAAATCAAACTTCGATTCGAAAATTGGAAATTGGAAGTTTCGAATGTGATCTTAAAGAAATTCTTGAAGCTATAGAGGTCACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26361</snp_id>
        <super_contig>c002300133.Contig3</super_contig>
        <contig_pos>44559</contig_pos>
        <strand></strand>
        <context>TCAAAATCTG[C/T]TACTATTAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCTGAATTCGAAATACATCCCGGAGATTTTGAATTTTATTCAAAATCTG</left_flank>
        <right_flank>TACTATTAAAAATTCGTGGTGGATCGAGAACTTGGAACCCTTCAAAAACT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGAAGCTCCAAAAGGCTTCGTCGAGTGAAATCCAAAAAGTTCTCAGTGACCCTAAATTTCTCTTTGGACACAATTGGTTTCGACAATTCCCATTTCTTCCGGTCCTACGAAAAGAATTGGATGTGGAAATATCAAAAATGGGAATTTCGAAATTACGGAGAAATTCAAATTCCCACAATTTTCGAAAACAAAAATGTCATTAGTTTTTGGAACAATGTGCATTATGGGCTCAAGGATATGTTCATTCATTTGAACGAAATCTTAAATTGCTCAGTTTTATCGATTGAATCAGATGAGAGAACTCCAGATGAGGCGTTGATGATGGCTCTTGAATTTTTGAGCTGGAAAAATCAAACTTCGATTCGAAAATTGGAAATTGGAAGTTTCGAATGTGATCTTAAAGAAATTCTTGAAGCTATAGAGGTCACAGAAACCCTGAAAATCACCTCTGAATTCGAAATACATCCCGGAGATTTTGAATTTTATTCAAAATCTGCTACTATTAAAAATTCGTGGTGGATCGAGAACTTGGAACCCTTCAAAAACTGTGTGGAAATTGAATTATCGGAATCTGAAATTTCCAATCAATCAATTATCGATTTTTATGGAGAATGGACTGCTGGAAGCTATAGTAATCTTAGATGGTTATCGGTGAAGAGTGAAAACTTGAACGAGGACTTGAAATTGAATGGAGTCCCTTTTTTGAAGGATCAAAAGGATTTGAGAACCAGTATAGAAAAATTGTGAGTTTTAGAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCGAAAACTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAACTTCAAA</canonical>
            <polymorphic>AAAAGAAGCTCCAAAAGGCTTCGTCGAGTGAAATCCAAAAAGTTCTCAGTGACCCTAAATTTCTCTTTGGACACAATTGGTTTCGACAATTCCCATTTCTTCCGGTCCTACGAAAAGAATTGGATGTGGAAATATCAAAAATGGGAATTTCGAAATTACGGAGAAATTCAAATTCCCACAATTTTCGAAAACAAAAATGTCATTAGTTTTTGGAACAATGTGCATTATGGGCTCAAGGATATGTTCATTCATTTGAACGAAATCTTAAATTGCTCAGTTTTATCGATTGAATCAGATGAGAGAACTCCAGATGAGGCGTTGATGATGGCTCTTGAATTTTTGAGCTGGAAAAATCAAACTTCGATTCGAAAATTGGAAATTGGAAGTTTCGAATGTGATCTTAAAGAAATTCTTGAAGCTATAGAGGTCACAGAAACCCTGAAAATCACCTCTGAATTCGAAATACATCCCGGAGATTTTGAATTTTATTCAAAATCTGYTACTATTAAAAATTCGTGGTGGATCGAGAACTTGGAACCCTTCAAAAACTGTGTGGAAATTGAATTATCGGAATCTGAAATTTCCAATCAATCAATTATCGATTTTTATGGAGAATGGACTGCTGGAAGCTATAGTAATCTTAGATGGTTATCGGTGAAGAGTGAAAACTTGAACGAGGACTTGAAATTGAATGGAGTCCCTTTTTTGAAGGATCAAAAGGATTTGAGAACCAGTATAGAAAAATTGTGAGTTTTAGAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCGAAAACTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAACTTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTGAAGCTATAGAGGTCACA</pcr_primer_p1>
		<pcr_primer_p2>CACCGATAACCATCTAAGATTAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTCTTGAAGCTATAGAGGTCACAGAAACCCTGAAAATCACCTCTGAATTCGAAATACATCCCGGAGATTTTGAATTTTATTCAAAATCTGCTACTATTAAAAATTCGTGGTGGATCGAGAACTTGGAACCCTTCAAAAACTGTGTGGAAATTGAATTATCGGAATCTGAAATTTCCAATCAATCAATTATCGATTTTTATGGAGAATGGACTGCTGGAAGCTATAGTAATCTTAGATGGTTATCGGTG</canonical_amplicon>
		<polymorphic_amplicon>TTCTTGAAGCTATAGAGGTCACAGAAACCCTGAAAATCACCTCTGAATTCGAAATACATCCCGGAGATTTTGAATTTTATTCAAAATCTGYTACTATTAAAAATTCGTGGTGGATCGAGAACTTGGAACCCTTCAAAAACTGTGTGGAAATTGAATTATCGGAATCTGAAATTTCCAATCAATCAATTATCGATTTTTATGGAGAATGGACTGCTGGAAGCTATAGTAATCTTAGATGGTTATCGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26362</snp_id>
        <super_contig>c002300133.Contig3</super_contig>
        <contig_pos>56256</contig_pos>
        <strand>+</strand>
        <context>CCTGATTTTA[A/C]AGTTTCTCGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCATTATCTTCCTCAACAATGAAACGGCGAATTTGACGGCCTGATTTTA</left_flank>
        <right_flank>AGTTTCTCGCTCAGAGGAACACAACAGACAGAAATGAAGGTGATCGTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAATGCAATTGTAAGGAACACTCCCCAATTTTTAACTCCTGGTCAATTTTCTACTTTAATCAAATCATCCATCACCCGGTTTTAGTTGTCCGCTTACTGTTTCCTCTCTTTTAATATCTTGCCAACCTTACACGTCTACTGTTCTCTTCCCCATTCTCTATGTTCACTTTACCTAGAACTTCCGTTATAACTTTTGAGCCATATCTCTCATCTGATCAATAATAAATAAATGTGGAGAAACCGGTTTCGAAATAACTGGTTTCGAAGTGACGCGGAGCCGATTTTTGGATTCTCAAAAAATAGTGTAATCTCTTTTTTTTTATTTTTTTAGGCTTAAGGATTAGTCACAGGAATAAATATGTGTTTTTTCTTGATTAAAATTCGCATTTTTGGACACTTGAAAATTTTCCCGAATTGAAAACCAATTCGGGAAATTTCTTCAATCTTTTCATTATCTTCCTCAACAATGAAACGGCGAATTTGACGGCCTGATTTTAAAGTTTCTCGCTCAGAGGAACACAACAGACAGAAATGAAGGTGATCGTTTTGTTGGGTACCAGTTTGCTGGTTGGACTCGCCAGCGGACAACTTTCATCTAGTGGAAGTGAGTTTTTCAAAATTTATTTTAATTCAGACCCAATTCGATCGGATTTGAACCTTCTCGATTTAAAGGAGGCCAGACATGAAAAATTTCAAAGTTTAAGTTTTTTGATATATGACACAGTACAGTCAGAAAATATGTTTGGCCATCCAACCATAACTCCATTTTGCCGTACATGCGAAAACGTTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAAGGAGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCAAGGACGACAGCTGTACGCAGAGTGACATTAGGCGTTGTACACCG</canonical>
            <polymorphic>TGGAATGCAATTGTAAGGAACACTCCCCAATTTTTAACTCCTGGTCAATTTTCTACTTTAATCAAATCATCCATCACCCGGTTTTAGTTGTCCGCTTACTGTTTCCTCTCTTTTAATATCTTGCCAACCTTACACGTCTACTGTTCTCTTCCCCATTCTCTATGTTCACTTTACCTAGAACTTCCGTTATAACTTTTGAGCCATATCTCTCATCTGATCAATAATAAATAAATGTGGAGAAACCGGTTTCGAAATAACTGGTTTCGAAGTGACGCGGAGCCGATTTTTGGATTCTCAAAAAATAGTGTAATCTCTTTTTTTTTATTTTTTTAGGCTTAAGGATTAGTCACAGGAATAAATATGTGTTTTTTCTTGATTAAAATTCGCATTTTTGGACACTTGAAAATTTTCCCGAATTGAAAACCAATTCGGGAAATTTCTTCAATCTTTTCATTATCTTCCTCAACAATGAAACGGCGAATTTGACGGCCTGATTTTAMAGTTTCTCGCTCAGAGGAACACAACAGACAGAAATGAAGGTGATCGTTTTGTTGGGTACCAGTTTGCTGGTTGGACTCGCCAGCGGACAACTTTCATCTAGTGGAAGTGAGTTTTTCAAAATTTATTTTAATTCAGACCCAATTCGATCGGATTTGAACCTTCTCGATTTAAAGGAGGCCAGACATGAAAAATTTCAAAGTTTAAGTTTTTTGATATATGACACAGTACAGTCAGAAAATATGTTTGGCCATCCAACCATAACTCCATTTTGCCGTACATGCGAAAACGTTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAAGGAGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCAAGGACGACAGCTGTACGCAGAGTGACATTAGGCGTTGTACACCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>498 207 172 123</canonical_bands>
                <polymorphic_bands>670 207 123</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>223 208 131 120 90 55 41 41 34 33 24</canonical_bands>
                <polymorphic_bands>251 223 208 90 55 41 41 34 33 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCATTATCTTCCTCAACAAT</pcr_primer_p1>
		<pcr_primer_p2>AACTTTGAAATTTTTCATGTCTG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TTTTCATTATCTTCCTCAACAATGAAACGGCGAATTTGACGGCCTGATTTTAAAGTTTCTCGCTCAGAGGAACACAACAGACAGAAATGAAGGTGATCGTTTTGTTGGGTACCAGTTTGCTGGTTGGACTCGCCAGCGGACAACTTTCATCTAGTGGAAGTGAGTTTTTCAAAATTTATTTTAATTCAGACCCAATTCGATCGGATTTGAACCTTCTCGATTTAAAGGAGGCCAGACATGAAAAATTTCAAAGTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCATTATCTTCCTCAACAATGAAACGGCGAATTTGACGGCCTGATTTTAMAGTTTCTCGCTCAGAGGAACACAACAGACAGAAATGAAGGTGATCGTTTTGTTGGGTACCAGTTTGCTGGTTGGACTCGCCAGCGGACAACTTTCATCTAGTGGAAGTGAGTTTTTCAAAATTTATTTTAATTCAGACCCAATTCGATCGGATTTGAACCTTCTCGATTTAAAGGAGGCCAGACATGAAAAATTTCAAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26363</snp_id>
        <super_contig>c002300133.Contig3</super_contig>
        <contig_pos>56627</contig_pos>
        <strand>+</strand>
        <context>gaacttgTGA[A/G]GGAGATGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGA</left_flank>
        <right_flank>GGAGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAA</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGATTAAAATTCGCATTTTTGGACACTTGAAAATTTTCCCGAATTGAAAACCAATTCGGGAAATTTCTTCAATCTTTTCATTATCTTCCTCAACAATGAAACGGCGAATTTGACGGCCTGATTTTAAAGTTTCTCGCTCAGAGGAACACAACAGACAGAAATGAAGGTGATCGTTTTGTTGGGTACCAGTTTGCTGGTTGGACTCGCCAGCGGACAACTTTCATCTAGTGGAAGTGAGTTTTTCAAAATTTATTTTAATTCAGACCCAATTCGATCGGATTTGAACCTTCTCGATTTAAAGGAGGCCAGACATGAAAAATTTCAAAGTTTAAGTTTTTTGATATATGACACAGTACAGTCAGAAAATATGTTTGGCCATCCAACCATAACTCCATTTTGCCGTACATGCGAAAACGTTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAAGGAGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCAAGGACGACAGCTGTACGCAGAGTGACATTAGGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAGGCAGTAGAAGGCAGGCGCCGCGTGGTGTAGACGTGAACGCGCATCACGCGTTCGATTCCCATCTGTCCGTTTTCGTTTTTTTTTCTGTTTTCATGCGGCGACATCATGGAATGACAGAATATCGACAAAAAGTCTGGAATTATCGCCTTACATTGAAGAAATCTAGTGTGTACTAAAAAAAAATAAATGCTCGTCAAGTAACGCGCATTAGGTCGCAATCGCACGATTTTCCGTCAGAATACATGATCTCGCTCCAAGAAAACTCCGTAGACTTTCGTCTCTGGCCTCCTTTAAAAAAATTGA</canonical>
            <polymorphic>CTTGATTAAAATTCGCATTTTTGGACACTTGAAAATTTTCCCGAATTGAAAACCAATTCGGGAAATTTCTTCAATCTTTTCATTATCTTCCTCAACAATGAAACGGCGAATTTGACGGCCTGATTTTAAAGTTTCTCGCTCAGAGGAACACAACAGACAGAAATGAAGGTGATCGTTTTGTTGGGTACCAGTTTGCTGGTTGGACTCGCCAGCGGACAACTTTCATCTAGTGGAAGTGAGTTTTTCAAAATTTATTTTAATTCAGACCCAATTCGATCGGATTTGAACCTTCTCGATTTAAAGGAGGCCAGACATGAAAAATTTCAAAGTTTAAGTTTTTTGATATATGACACAGTACAGTCAGAAAATATGTTTGGCCATCCAACCATAACTCCATTTTGCCGTACATGCGAAAACGTTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGARGGAGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCAAGGACGACAGCTGTACGCAGAGTGACATTAGGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAGGCAGTAGAAGGCAGGCGCCGCGTGGTGTAGACGTGAACGCGCATCACGCGTTCGATTCCCATCTGTCCGTTTTCGTTTTTTTTTCTGTTTTCATGCGGCGACATCATGGAATGACAGAATATCGACAAAAAGTCTGGAATTATCGCCTTACATTGAAGAAATCTAGTGTGTACTAAAAAAAAATAAATGCTCGTCAAGTAACGCGCATTAGGTCGCAATCGCACGATTTTCCGTCAGAATACATGATCTCGCTCCAAGAAAACTCCGTAGACTTTCGTCTCTGGCCTCCTTTAAAAAAATTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGATATATGACACAGTACAGTCAG</pcr_primer_p1>
		<pcr_primer_p2>CTTGCCTTTATGTATGCAATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTGATATATGACACAGTACAGTCAGAAAATATGTTTGGCCATCCAACCATAACTCCATTTTGCCGTACATGCGAAAACGTTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAAGGAGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTGATATATGACACAGTACAGTCAGAAAATATGTTTGGCCATCCAACCATAACTCCATTTTGCCGTACATGCGAAAACGTTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGARGGAGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26364</snp_id>
        <super_contig>c002300133.Contig3</super_contig>
        <contig_pos>56742</contig_pos>
        <strand>+</strand>
        <context>GAGTGACATT[A/T]RGCGTTGTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCGATTGCATACATAAAGGCAAGGACGACAGCTGTACGCAGAGTGACATT</left_flank>
        <right_flank>GGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACT</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGCCTGATTTTAAAGTTTCTCGCTCAGAGGAACACAACAGACAGAAATGAAGGTGATCGTTTTGTTGGGTACCAGTTTGCTGGTTGGACTCGCCAGCGGACAACTTTCATCTAGTGGAAGTGAGTTTTTCAAAATTTATTTTAATTCAGACCCAATTCGATCGGATTTGAACCTTCTCGATTTAAAGGAGGCCAGACATGAAAAATTTCAAAGTTTAAGTTTTTTGATATATGACACAGTACAGTCAGAAAATATGTTTGGCCATCCAACCATAACTCCATTTTGCCGTACATGCGAAAACGTTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAAGGAGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCAAGGACGACAGCTGTACGCAGAGTGACATTAGGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAGGCAGTAGAAGGCAGGCGCCGCGTGGTGTAGACGTGAACGCGCATCACGCGTTCGATTCCCATCTGTCCGTTTTCGTTTTTTTTTCTGTTTTCATGCGGCGACATCATGGAATGACAGAATATCGACAAAAAGTCTGGAATTATCGCCTTACATTGAAGAAATCTAGTGTGTACTAAAAAAAAATAAATGCTCGTCAAGTAACGCGCATTAGGTCGCAATCGCACGATTTTCCGTCAGAATACATGATCTCGCTCCAAGAAAACTCCGTAGACTTTCGTCTCTGGCCTCCTTTAAAAAAATTGAAATTTCCGCCAGTCCAAGAATGAAAAGACCGCGAGACATTCAACCCTTCTTTTCGTTTTTTTATGGTTTAGTTTTCAGAAATGTTTTTCCAAATTTTCAGACCAGTCCGATACCC</canonical>
            <polymorphic>CGGCCTGATTTTAAAGTTTCTCGCTCAGAGGAACACAACAGACAGAAATGAAGGTGATCGTTTTGTTGGGTACCAGTTTGCTGGTTGGACTCGCCAGCGGACAACTTTCATCTAGTGGAAGTGAGTTTTTCAAAATTTATTTTAATTCAGACCCAATTCGATCGGATTTGAACCTTCTCGATTTAAAGGAGGCCAGACATGAAAAATTTCAAAGTTTAAGTTTTTTGATATATGACACAGTACAGTCAGAAAATATGTTTGGCCATCCAACCATAACTCCATTTTGCCGTACATGCGAAAACGTTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAAGGAGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCAAGGACGACAGCTGTACGCAGAGTGACATTWGGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAGGCAGTAGAAGGCAGGCGCCGCGTGGTGTAGACGTGAACGCGCATCACGCGTTCGATTCCCATCTGTCCGTTTTCGTTTTTTTTTCTGTTTTCATGCGGCGACATCATGGAATGACAGAATATCGACAAAAAGTCTGGAATTATCGCCTTACATTGAAGAAATCTAGTGTGTACTAAAAAAAAATAAATGCTCGTCAAGTAACGCGCATTAGGTCGCAATCGCACGATTTTCCGTCAGAATACATGATCTCGCTCCAAGAAAACTCCGTAGACTTTCGTCTCTGGCCTCCTTTAAAAAAATTGAAATTTCCGCCAGTCCAAGAATGAAAAGACCGCGAGACATTCAACCCTTCTTTTCGTTTTTTTATGGTTTAGTTTTCAGAAATGTTTTTCCAAATTTTCAGACCAGTCCGATACCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAACCATAACTCCATTTTG</pcr_primer_p1>
		<pcr_primer_p2>ACAGGAGATTTTTCGTAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>CCAACCATAACTCCATTTTGCCGTACATGCGAAAACGTTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAAGGAGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCAAGGACGACAGCTGTACGCAGAGTGACATTAGGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGT</canonical_amplicon>
		<polymorphic_amplicon>CCAACCATAACTCCATTTTGCCGTACATGCGAAAACGTTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAAGGAGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCAAGGACGACAGCTGTACGCAGAGTGACATTWGGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26365</snp_id>
        <super_contig>c002300133.Contig3</super_contig>
        <contig_pos>56743</contig_pos>
        <strand></strand>
        <context>AGTGACATTW[G/A]GCGTTGTACA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGATTGCATACATAAAGGCAAGGACGACAGCTGTACGCAGAGTGACATTA</left_flank>
        <right_flank>GCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCCTGATTTTAAAGTTTCTCGCTCAGAGGAACACAACAGACAGAAATGAAGGTGATCGTTTTGTTGGGTACCAGTTTGCTGGTTGGACTCGCCAGCGGACAACTTTCATCTAGTGGAAGTGAGTTTTTCAAAATTTATTTTAATTCAGACCCAATTCGATCGGATTTGAACCTTCTCGATTTAAAGGAGGCCAGACATGAAAAATTTCAAAGTTTAAGTTTTTTGATATATGACACAGTACAGTCAGAAAATATGTTTGGCCATCCAACCATAACTCCATTTTGCCGTACATGCGAAAACGTTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAAGGAGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCAAGGACGACAGCTGTACGCAGAGTGACATTAGGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAGGCAGTAGAAGGCAGGCGCCGCGTGGTGTAGACGTGAACGCGCATCACGCGTTCGATTCCCATCTGTCCGTTTTCGTTTTTTTTTCTGTTTTCATGCGGCGACATCATGGAATGACAGAATATCGACAAAAAGTCTGGAATTATCGCCTTACATTGAAGAAATCTAGTGTGTACTAAAAAAAAATAAATGCTCGTCAAGTAACGCGCATTAGGTCGCAATCGCACGATTTTCCGTCAGAATACATGATCTCGCTCCAAGAAAACTCCGTAGACTTTCGTCTCTGGCCTCCTTTAAAAAAATTGAAATTTCCGCCAGTCCAAGAATGAAAAGACCGCGAGACATTCAACCCTTCTTTTCGTTTTTTTATGGTTTAGTTTTCAGAAATGTTTTTCCAAATTTTCAGACCAGTCCGATACCCC</canonical>
            <polymorphic>GGCCTGATTTTAAAGTTTCTCGCTCAGAGGAACACAACAGACAGAAATGAAGGTGATCGTTTTGTTGGGTACCAGTTTGCTGGTTGGACTCGCCAGCGGACAACTTTCATCTAGTGGAAGTGAGTTTTTCAAAATTTATTTTAATTCAGACCCAATTCGATCGGATTTGAACCTTCTCGATTTAAAGGAGGCCAGACATGAAAAATTTCAAAGTTTAAGTTTTTTGATATATGACACAGTACAGTCAGAAAATATGTTTGGCCATCCAACCATAACTCCATTTTGCCGTACATGCGAAAACGTTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAAGGAGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCAAGGACGACAGCTGTACGCAGAGTGACATTARGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAGGCAGTAGAAGGCAGGCGCCGCGTGGTGTAGACGTGAACGCGCATCACGCGTTCGATTCCCATCTGTCCGTTTTCGTTTTTTTTTCTGTTTTCATGCGGCGACATCATGGAATGACAGAATATCGACAAAAAGTCTGGAATTATCGCCTTACATTGAAGAAATCTAGTGTGTACTAAAAAAAAATAAATGCTCGTCAAGTAACGCGCATTAGGTCGCAATCGCACGATTTTCCGTCAGAATACATGATCTCGCTCCAAGAAAACTCCGTAGACTTTCGTCTCTGGCCTCCTTTAAAAAAATTGAAATTTCCGCCAGTCCAAGAATGAAAAGACCGCGAGACATTCAACCCTTCTTTTCGTTTTTTTATGGTTTAGTTTTCAGAAATGTTTTTCCAAATTTTCAGACCAGTCCGATACCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAACCATAACTCCATTTTG</pcr_primer_p1>
		<pcr_primer_p2>ACAGGAGATTTTTCGTAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>CCAACCATAACTCCATTTTGCCGTACATGCGAAAACGTTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAAGGAGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCAAGGACGACAGCTGTACGCAGAGTGACATTAGGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGT</canonical_amplicon>
		<polymorphic_amplicon>CCAACCATAACTCCATTTTGCCGTACATGCGAAAACGTTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAAGGAGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCAAGGACGACAGCTGTACGCAGAGTGACATTARGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26366</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>18588</contig_pos>
        <strand></strand>
        <context>AGTAGCGGCA[C/T]ATGTGCCAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGGGCACGATTACCGCGTTGCAGCGGCACCGGTGCCCCAAGTAGCGGCA</left_flank>
        <right_flank>ATGTGCCAAAAATTTGCTGAGATATTATGACAAACATTTTTTATCAGTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGTTTCCGACCAGCAACGAGGAATATTTCAAGTGTAATATGTAAGTTGGGGGCAATATGTGAAAACGGAACATTGTTGTTTGAAAATACAAAGTTCAAAAATATTTGAAAATAGTGTTAGTTCCTATTTTTCAGGTCAGAGACACAAAGCCAAGCCCGAGATCAATGACGCTGGAGAAGAGGAGGAAGAAACTTAGATTCATCAAAATTCATCAACCTCATCACCACACTCTTCGGAATCTTCCCTACAAATTTAAATTTTCTAATCTTTTAAATGTTCTAATTTTTGTTGTTATCCTTTTTATTGAGTTTATAATGTAATAAACTGTTTGATAATAGGTAAATCGATTAAAACACCCGATTCCAAAGAAAAAAATTCAAAAAACGGCACACATGAGCACGGCAACGGCACGGCAACGGCACGCAAAACGCATGCGTGCCCCGACCCCCCGGGCACGATTACCGCGTTGCAGCGGCACCGGTGCCCCAAGTAGCGGCACATGTGCCAAAAATTTGCTGAGATATTATGACAAACATTTTTTATCAGTTGATAGATTTTTGTTATCTCTTGAACAGTGTGTCCTTTCGACACTACTTCGATAAAATTTTCGAGAAATTTCTCGAAAAATTCCTCGAGAAATTTCTCGAAAAATTTCGAGGAATTCCTCGAGGAGTTATTCGAAAAATGTTTCAAGGCGAATTCATTTTTACAGTGGTGGCCTAACTTTTGAAAGTTTGGTTTTCTGGGCCACCACGTAATAATTGCCTAGAAGTGGCCTGACATGAGCCTGGTGTGTTTTCTNNNNNNNNNNAAAAATGGCCTAAAAATGCCCCAACATGACCTTGGCTGCTTTCTAGGCCATTTTGAAGTGGTGGCCTAACTTTTGCAAAATTGGATTTTTAGGCCCCCACTTTAAAAAAATGGCCTAAAATGCATTAACATGACCCTGTTATGCTTTCTAAGCCATTTTGAAGTTGTCGCCTAGAAAACCAAATTTGC</canonical>
            <polymorphic>TAGTTTCCGACCAGCAACGAGGAATATTTCAAGTGTAATATGTAAGTTGGGGGCAATATGTGAAAACGGAACATTGTTGTTTGAAAATACAAAGTTCAAAAATATTTGAAAATAGTGTTAGTTCCTATTTTTCAGGTCAGAGACACAAAGCCAAGCCCGAGATCAATGACGCTGGAGAAGAGGAGGAAGAAACTTAGATTCATCAAAATTCATCAACCTCATCACCACACTCTTCGGAATCTTCCCTACAAATTTAAATTTTCTAATCTTTTAAATGTTCTAATTTTTGTTGTTATCCTTTTTATTGAGTTTATAATGTAATAAACTGTTTGATAATAGGTAAATCGATTAAAACACCCGATTCCAAAGAAAAAAATTCAAAAAACGGCACACATGAGCACGGCAACGGCACGGCAACGGCACGCAAAACGCATGCGTGCCCCGACCCCCCGGGCACGATTACCGCGTTGCAGCGGCACCGGTGCCCCAAGTAGCGGCAYATGTGCCAAAAATTTGCTGAGATATTATGACAAACATTTTTTATCAGTTGATAGATTTTTGTTATCTCTTGAACAGTGTGTCCTTTCGACACTACTTCGATAAAATTTTCGAGAAATTTCTCGAAAAATTCCTCGAGAAATTTCTCGAAAAATTTCGAGGAATTCCTCGAGGAGTTATTCGAAAAATGTTTCAAGGCGAATTCATTTTTACAGTGGTGGCCTAACTTTTGAAAGTTTGGTTTTCTGGGCCACCACGTAATAATTGCCTAGAAGTGGCCTGACATGAGCCTGGTGTGTTTTCTNNNNNNNNNNAAAAATGGCCTAAAAATGCCCCAACATGACCTTGGCTGCTTTCTAGGCCATTTTGAAGTGGTGGCCTAACTTTTGCAAAATTGGATTTTTAGGCCCCCACTTTAAAAAAATGGCCTAAAATGCATTAACATGACCCTGTTATGCTTTCTAAGCCATTTTGAAGTTGTCGCCTAGAAAACCAAATTTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>497 435 68</canonical_bands>
                <polymorphic_bands>565 435</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>393 282 104 68 59 55 39</canonical_bands>
                <polymorphic_bands>393 350 104 59 55 39</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>127 124 89 79 76 73 55 36 35 34 33 28 27 22 21 19 17 17 15 11 11 11 8 6 6 3 3 3 3 2 2 2 2</canonical_bands>
                <polymorphic_bands>127 124 89 79 76 73 55 36 35 34 33 28 27 22 21 21 19 17 17 11 11 11 8 6 3 3 3 3 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAGGTAAATCGATTAAAACACC</pcr_primer_p1>
		<pcr_primer_p2>AGGACACACTGTTCAAGAGATAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATAGGTAAATCGATTAAAACACCCGATTCCAAAGAAAAAAATTCAAAAAACGGCACACATGAGCACGGCAACGGCACGGCAACGGCACGCAAAACGCATGCGTGCCCCGACCCCCCGGGCACGATTACCGCGTTGCAGCGGCACCGGTGCCCCAAGTAGCGGCACATGTGCCAAAAATTTGCTGAGATATTATGACAAACATTTTTTATCAGTTGATAGATTTTTGTTATCTCTTGAACAGTGTGTCCT</canonical_amplicon>
		<polymorphic_amplicon>AATAGGTAAATCGATTAAAACACCCGATTCCAAAGAAAAAAATTCAAAAAACGGCACACATGAGCACGGCAACGGCACGGCAACGGCACGCAAAACGCATGCGTGCCCCGACCCCCCGGGCACGATTACCGCGTTGCAGCGGCACCGGTGCCCCAAGTAGCGGCAYATGTGCCAAAAATTTGCTGAGATATTATGACAAACATTTTTTATCAGTTGATAGATTTTTGTTATCTCTTGAACAGTGTGTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26367</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>18681</contig_pos>
        <strand></strand>
        <context>CTTTCGACAC[T/G]ACTTCGATAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATCAGTTGATAGATTTTTGTTATCTCTTGAACAGTGTGTCCTTTCGACAC</left_flank>
        <right_flank>ACTTCGATAAAATTTTCGAGAAATTTCTCGAAAAATTCCTCGAGAAATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCAAAAATATTTGAAAATAGTGTTAGTTCCTATTTTTCAGGTCAGAGACACAAAGCCAAGCCCGAGATCAATGACGCTGGAGAAGAGGAGGAAGAAACTTAGATTCATCAAAATTCATCAACCTCATCACCACACTCTTCGGAATCTTCCCTACAAATTTAAATTTTCTAATCTTTTAAATGTTCTAATTTTTGTTGTTATCCTTTTTATTGAGTTTATAATGTAATAAACTGTTTGATAATAGGTAAATCGATTAAAACACCCGATTCCAAAGAAAAAAATTCAAAAAACGGCACACATGAGCACGGCAACGGCACGGCAACGGCACGCAAAACGCATGCGTGCCCCGACCCCCCGGGCACGATTACCGCGTTGCAGCGGCACCGGTGCCCCAAGTAGCGGCACATGTGCCAAAAATTTGCTGAGATATTATGACAAACATTTTTTATCAGTTGATAGATTTTTGTTATCTCTTGAACAGTGTGTCCTTTCGACACTACTTCGATAAAATTTTCGAGAAATTTCTCGAAAAATTCCTCGAGAAATTTCTCGAAAAATTTCGAGGAATTCCTCGAGGAGTTATTCGAAAAATGTTTCAAGGCGAATTCATTTTTACAGTGGTGGCCTAACTTTTGAAAGTTTGGTTTTCTGGGCCACCACGTAATAATTGCCTAGAAGTGGCCTGACATGAGCCTGGTGTGTTTTCTNNNNNNNNNNAAAAATGGCCTAAAAATGCCCCAACATGACCTTGGCTGCTTTCTAGGCCATTTTGAAGTGGTGGCCTAACTTTTGCAAAATTGGATTTTTAGGCCCCCACTTTAAAAAAATGGCCTAAAATGCATTAACATGACCCTGTTATGCTTTCTAAGCCATTTTGAAGTTGTCGCCTAGAAAACCAAATTTGCAAAAATTAGGCCACCACTTTAAAATGACAAAATAAACAAGAAAATACTGTCAGCAACGCGCGAAAAACTGAAACAAGTCGCTAATGACACTCC</canonical>
            <polymorphic>GTTCAAAAATATTTGAAAATAGTGTTAGTTCCTATTTTTCAGGTCAGAGACACAAAGCCAAGCCCGAGATCAATGACGCTGGAGAAGAGGAGGAAGAAACTTAGATTCATCAAAATTCATCAACCTCATCACCACACTCTTCGGAATCTTCCCTACAAATTTAAATTTTCTAATCTTTTAAATGTTCTAATTTTTGTTGTTATCCTTTTTATTGAGTTTATAATGTAATAAACTGTTTGATAATAGGTAAATCGATTAAAACACCCGATTCCAAAGAAAAAAATTCAAAAAACGGCACACATGAGCACGGCAACGGCACGGCAACGGCACGCAAAACGCATGCGTGCCCCGACCCCCCGGGCACGATTACCGCGTTGCAGCGGCACCGGTGCCCCAAGTAGCGGCACATGTGCCAAAAATTTGCTGAGATATTATGACAAACATTTTTTATCAGTTGATAGATTTTTGTTATCTCTTGAACAGTGTGTCCTTTCGACACKACTTCGATAAAATTTTCGAGAAATTTCTCGAAAAATTCCTCGAGAAATTTCTCGAAAAATTTCGAGGAATTCCTCGAGGAGTTATTCGAAAAATGTTTCAAGGCGAATTCATTTTTACAGTGGTGGCCTAACTTTTGAAAGTTTGGTTTTCTGGGCCACCACGTAATAATTGCCTAGAAGTGGCCTGACATGAGCCTGGTGTGTTTTCTNNNNNNNNNNAAAAATGGCCTAAAAATGCCCCAACATGACCTTGGCTGCTTTCTAGGCCATTTTGAAGTGGTGGCCTAACTTTTGCAAAATTGGATTTTTAGGCCCCCACTTTAAAAAAATGGCCTAAAATGCATTAACATGACCCTGTTATGCTTTCTAAGCCATTTTGAAGTTGTCGCCTAGAAAACCAAATTTGCAAAAATTAGGCCACCACTTTAAAATGACAAAATAAACAAGAAAATACTGTCAGCAACGCGCGAAAAACTGAAACAAGTCGCTAATGACACTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGCTGAGATATTATGACAAACA</pcr_primer_p1>
		<pcr_primer_p2>ATTCCCTCAGTGTGTCTTTTAGT</pcr_primer_p2>
		<pcr_amplicon_size>770</pcr_amplicon_size>
		<canonical_amplicon>TTGCTGAGATATTATGACAAACATTTTTTATCAGTTGATAGATTTTTGTTATCTCTTGAACAGTGTGTCCTTTCGACACTACTTCGATAAAATTTTCGAGAA</canonical_amplicon>
		<polymorphic_amplicon>TTGCTGAGATATTATGACAAACATTTTTTATCAGTTGATAGATTTTTGTTATCTCTTGAACAGTGTGTCCTTTCGACACKACTTCGATAAAATTTTCGAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26368</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>35917</contig_pos>
        <strand>+</strand>
        <context>GTTGCAAGTG[C/T]TCGAGTTATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAATTGATAGGAAACCTTTTAAAAGTGCTCATGATCAAGTTGCAAGTG</left_flank>
        <right_flank>TCGAGTTATTTTGAGCTCTGACAGCTCAAAATTGAGCTCAAGTTTTGAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATTTAAAATGTTTTTGATTATATACATATACAGTGCGCATCATAATTATAGGACACCCTCCCAAACGAGTGTTCTGAAACAACCAAAAAAGATAATTAAATTCTGTGAACGCAGTTCAATTCAGCGTGTCTAAAAACCTACGTTCACAAAATGTCAGGCCAATTGAGCTATTTTTATGCTCACAGGGCTGAACAATCACTTTTTAGGCCGCGTCATAATTATAGGACACCCCTGGAAAATGAAAAATCTCAAGTTTTTTAGGAGAAAAATTCAAATTTTTTGTTGATCATTGTCAAAATAGCCTCAAAACAGCATATTTGGACATTATACACAATCATTGATCCCTCTATTCCAATTTCAGAAAAAATTATTTTCAGACATTTTTGTCATTTTTTGGGTTTTTGGAATAAATTATGAATAACTTTGCTCCTGGGTAAGCTTTCCGGCTGAAATTGATAGGAAACCTTTTAAAAGTGCTCATGATCAAGTTGCAAGTGCTCGAGTTATTTTGAGCTCTGACAGCTCAAAATTGAGCTCAAGTTTTGAACTCAAAAAATAATGCGGGATCGATAATTTTTTAACGCTGTAAATAATGTTCGGAAAACTTTCTAAATTACCAGAAATGTTATTGAAGTTGAAGATAAGTACGGAATGATAACTTTCAGTTAGCAAATCAAGCTGTTCACCATAATCAGATTCACCGAATTTCAAGGGCAGTTTTAGAAACTTTAGTTTTGCTTAAATTCGAAACAACAGCTCAGAATATCATAACAACAATTAGTATACAATTCAAATCACTGAAAAAAATGTTTCCTATCAATTTCAGCCGGAAAGCTTACACAGGAGCAAAGTTATTGACAATTTATTCCAAAAACCCAAAAAAAAAAGACAAAAATGTCTGAAAATAATTTTTTCTGAAACTTGAATAGAGGGATCAATGATTGTGTATACTGTCCAAATATGCTGTTTTGAGACTATTTTGCCAATGATGAACAAAA</canonical>
            <polymorphic>TTATTTAAAATGTTTTTGATTATATACATATACAGTGCGCATCATAATTATAGGACACCCTCCCAAACGAGTGTTCTGAAACAACCAAAAAAGATAATTAAATTCTGTGAACGCAGTTCAATTCAGCGTGTCTAAAAACCTACGTTCACAAAATGTCAGGCCAATTGAGCTATTTTTATGCTCACAGGGCTGAACAATCACTTTTTAGGCCGCGTCATAATTATAGGACACCCCTGGAAAATGAAAAATCTCAAGTTTTTTAGGAGAAAAATTCAAATTTTTTGTTGATCATTGTCAAAATAGCCTCAAAACAGCATATTTGGACATTATACACAATCATTGATCCCTCTATTCCAATTTCAGAAAAAATTATTTTCAGACATTTTTGTCATTTTTTGGGTTTTTGGAATAAATTATGAATAACTTTGCTCCTGGGTAAGCTTTCCGGCTGAAATTGATAGGAAACCTTTTAAAAGTGCTCATGATCAAGTTGCAAGTGYTCGAGTTATTTTGAGCTCTGACAGCTCAAAATTGAGCTCAAGTTTTGAACTCAAAAAATAATGCGGGATCGATAATTTTTTAACGCTGTAAATAATGTTCGGAAAACTTTCTAAATTACCAGAAATGTTATTGAAGTTGAAGATAAGTACGGAATGATAACTTTCAGTTAGCAAATCAAGCTGTTCACCATAATCAGATTCACCGAATTTCAAGGGCAGTTTTAGAAACTTTAGTTTTGCTTAAATTCGAAACAACAGCTCAGAATATCATAACAACAATTAGTATACAATTCAAATCACTGAAAAAAATGTTTCCTATCAATTTCAGCCGGAAAGCTTACACAGGAGCAAAGTTATTGACAATTTATTCCAAAAACCCAAAAAAAAAAGACAAAAATGTCTGAAAATAATTTTTTCTGAAACTTGAATAGAGGGATCAATGATTGTGTATACTGTCCAAATATGCTGTTTTGAGACTATTTTGCCAATGATGAACAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>480 462 21 21 16</canonical_bands>
                <polymorphic_bands>480 462 37 21</polymorphic_bands>
            </assay>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>480 462 21 21 16</canonical_bands>
                <polymorphic_bands>480 462 37 21</polymorphic_bands>
            </assay>
            <assay>
                <site>CTCGAG</site>
                <isoschizomers>
                    <enzyme>BssHI</enzyme>
                    <enzyme>PaeR7I</enzyme>
                    <enzyme>SciI</enzyme>
                    <enzyme>Sfr274I</enzyme>
                    <enzyme>SlaI</enzyme>
                    <enzyme>TliI</enzyme>
                    <enzyme>XhoI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>463 250 250 37</canonical_bands>
                <polymorphic_bands>463 287 250</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAGACATTTTTGTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTAGAAAGTTTTCCGAACATTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAGACATTTTTGTCATTTTTTGGGTTTTTGGAATAAATTATGAATAACTTTGCTCCTGGGTAAGCTTTCCGGCTGAAATTGATAGGAAACCTTTTAAAAGTGCTCATGATCAAGTTGCAAGTGCTCGAGTTATTTTGAGCTCTGACAGCTCAAAATTGAGCTCAAGTTTTGAACTCAAAAAATAATGCGGGATCGATAATTTTTTAACGCTGTAAATAATGTTCGGAAAACTTTCTAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAGACATTTTTGTCATTTTTTGGGTTTTTGGAATAAATTATGAATAACTTTGCTCCTGGGTAAGCTTTCCGGCTGAAATTGATAGGAAACCTTTTAAAAGTGCTCATGATCAAGTTGCAAGTGYTCGAGTTATTTTGAGCTCTGACAGCTCAAAATTGAGCTCAAGTTTTGAACTCAAAAAATAATGCGGGATCGATAATTTTTTAACGCTGTAAATAATGTTCGGAAAACTTTCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26369</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>35977</contig_pos>
        <strand>+</strand>
        <context>CTCAAAAAAT[A/G]ATGCGGGATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGAGCTCTGACAGCTCAAAATTGAGCTCAAGTTTTGAACTCAAAAAAT</left_flank>
        <right_flank>ATGCGGGATCGATAATTTTTTAACGCTGTAAATAATGTTCGGAAAACTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCCAAACGAGTGTTCTGAAACAACCAAAAAAGATAATTAAATTCTGTGAACGCAGTTCAATTCAGCGTGTCTAAAAACCTACGTTCACAAAATGTCAGGCCAATTGAGCTATTTTTATGCTCACAGGGCTGAACAATCACTTTTTAGGCCGCGTCATAATTATAGGACACCCCTGGAAAATGAAAAATCTCAAGTTTTTTAGGAGAAAAATTCAAATTTTTTGTTGATCATTGTCAAAATAGCCTCAAAACAGCATATTTGGACATTATACACAATCATTGATCCCTCTATTCCAATTTCAGAAAAAATTATTTTCAGACATTTTTGTCATTTTTTGGGTTTTTGGAATAAATTATGAATAACTTTGCTCCTGGGTAAGCTTTCCGGCTGAAATTGATAGGAAACCTTTTAAAAGTGCTCATGATCAAGTTGCAAGTGCTCGAGTTATTTTGAGCTCTGACAGCTCAAAATTGAGCTCAAGTTTTGAACTCAAAAAATAATGCGGGATCGATAATTTTTTAACGCTGTAAATAATGTTCGGAAAACTTTCTAAATTACCAGAAATGTTATTGAAGTTGAAGATAAGTACGGAATGATAACTTTCAGTTAGCAAATCAAGCTGTTCACCATAATCAGATTCACCGAATTTCAAGGGCAGTTTTAGAAACTTTAGTTTTGCTTAAATTCGAAACAACAGCTCAGAATATCATAACAACAATTAGTATACAATTCAAATCACTGAAAAAAATGTTTCCTATCAATTTCAGCCGGAAAGCTTACACAGGAGCAAAGTTATTGACAATTTATTCCAAAAACCCAAAAAAAAAAGACAAAAATGTCTGAAAATAATTTTTTCTGAAACTTGAATAGAGGGATCAATGATTGTGTATACTGTCCAAATATGCTGTTTTGAGACTATTTTGCCAATGATGAACAAAAAAATTTGAATTTTTCTCCTAAAAAAACTTGAGATTTTTCATTTTCCAGGGGTGTCCTATA</canonical>
            <polymorphic>TCCCAAACGAGTGTTCTGAAACAACCAAAAAAGATAATTAAATTCTGTGAACGCAGTTCAATTCAGCGTGTCTAAAAACCTACGTTCACAAAATGTCAGGCCAATTGAGCTATTTTTATGCTCACAGGGCTGAACAATCACTTTTTAGGCCGCGTCATAATTATAGGACACCCCTGGAAAATGAAAAATCTCAAGTTTTTTAGGAGAAAAATTCAAATTTTTTGTTGATCATTGTCAAAATAGCCTCAAAACAGCATATTTGGACATTATACACAATCATTGATCCCTCTATTCCAATTTCAGAAAAAATTATTTTCAGACATTTTTGTCATTTTTTGGGTTTTTGGAATAAATTATGAATAACTTTGCTCCTGGGTAAGCTTTCCGGCTGAAATTGATAGGAAACCTTTTAAAAGTGCTCATGATCAAGTTGCAAGTGCTCGAGTTATTTTGAGCTCTGACAGCTCAAAATTGAGCTCAAGTTTTGAACTCAAAAAATRATGCGGGATCGATAATTTTTTAACGCTGTAAATAATGTTCGGAAAACTTTCTAAATTACCAGAAATGTTATTGAAGTTGAAGATAAGTACGGAATGATAACTTTCAGTTAGCAAATCAAGCTGTTCACCATAATCAGATTCACCGAATTTCAAGGGCAGTTTTAGAAACTTTAGTTTTGCTTAAATTCGAAACAACAGCTCAGAATATCATAACAACAATTAGTATACAATTCAAATCACTGAAAAAAATGTTTCCTATCAATTTCAGCCGGAAAGCTTACACAGGAGCAAAGTTATTGACAATTTATTCCAAAAACCCAAAAAAAAAAGACAAAAATGTCTGAAAATAATTTTTTCTGAAACTTGAATAGAGGGATCAATGATTGTGTATACTGTCCAAATATGCTGTTTTGAGACTATTTTGCCAATGATGAACAAAAAAATTTGAATTTTTCTCCTAAAAAAACTTGAGATTTTTCATTTTCCAGGGGTGTCCTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAGACATTTTTGTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTAGAAAGTTTTCCGAACATTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAGACATTTTTGTCATTTTTTGGGTTTTTGGAATAAATTATGAATAACTTTGCTCCTGGGTAAGCTTTCCGGCTGAAATTGATAGGAAACCTTTTAAAAGTGCTCATGATCAAGTTGCAAGTGCTCGAGTTATTTTGAGCTCTGACAGCTCAAAATTGAGCTCAAGTTTTGAACTCAAAAAATAATGCGGGATCGATAATTTTTTAACGCTGTAAATAATGTTCGGAAAACTTTCTAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAGACATTTTTGTCATTTTTTGGGTTTTTGGAATAAATTATGAATAACTTTGCTCCTGGGTAAGCTTTCCGGCTGAAATTGATAGGAAACCTTTTAAAAGTGCTCATGATCAAGTTGCAAGTGCTCGAGTTATTTTGAGCTCTGACAGCTCAAAATTGAGCTCAAGTTTTGAACTCAAAAAATRATGCGGGATCGATAATTTTTTAACGCTGTAAATAATGTTCGGAAAACTTTCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26370</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>35996</contig_pos>
        <strand>+</strand>
        <context>TCGATAATTT[G/T]TTAACGCTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATTGAGCTCAAGTTTTGAACTCAAAAAATAATGCGGGATCGATAATTT</left_flank>
        <right_flank>TTAACGCTGTAAATAATGTTCGGAAAACTTTCTAAATTACCAGAAATGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAACCAAAAAAGATAATTAAATTCTGTGAACGCAGTTCAATTCAGCGTGTCTAAAAACCTACGTTCACAAAATGTCAGGCCAATTGAGCTATTTTTATGCTCACAGGGCTGAACAATCACTTTTTAGGCCGCGTCATAATTATAGGACACCCCTGGAAAATGAAAAATCTCAAGTTTTTTAGGAGAAAAATTCAAATTTTTTGTTGATCATTGTCAAAATAGCCTCAAAACAGCATATTTGGACATTATACACAATCATTGATCCCTCTATTCCAATTTCAGAAAAAATTATTTTCAGACATTTTTGTCATTTTTTGGGTTTTTGGAATAAATTATGAATAACTTTGCTCCTGGGTAAGCTTTCCGGCTGAAATTGATAGGAAACCTTTTAAAAGTGCTCATGATCAAGTTGCAAGTGCTCGAGTTATTTTGAGCTCTGACAGCTCAAAATTGAGCTCAAGTTTTGAACTCAAAAAATAATGCGGGATCGATAATTTTTTAACGCTGTAAATAATGTTCGGAAAACTTTCTAAATTACCAGAAATGTTATTGAAGTTGAAGATAAGTACGGAATGATAACTTTCAGTTAGCAAATCAAGCTGTTCACCATAATCAGATTCACCGAATTTCAAGGGCAGTTTTAGAAACTTTAGTTTTGCTTAAATTCGAAACAACAGCTCAGAATATCATAACAACAATTAGTATACAATTCAAATCACTGAAAAAAATGTTTCCTATCAATTTCAGCCGGAAAGCTTACACAGGAGCAAAGTTATTGACAATTTATTCCAAAAACCCAAAAAAAAAAGACAAAAATGTCTGAAAATAATTTTTTCTGAAACTTGAATAGAGGGATCAATGATTGTGTATACTGTCCAAATATGCTGTTTTGAGACTATTTTGCCAATGATGAACAAAAAAATTTGAATTTTTCTCCTAAAAAAACTTGAGATTTTTCATTTTCCAGGGGTGTCCTATAATTATGACGCGGCCTAAAA</canonical>
            <polymorphic>AACAACCAAAAAAGATAATTAAATTCTGTGAACGCAGTTCAATTCAGCGTGTCTAAAAACCTACGTTCACAAAATGTCAGGCCAATTGAGCTATTTTTATGCTCACAGGGCTGAACAATCACTTTTTAGGCCGCGTCATAATTATAGGACACCCCTGGAAAATGAAAAATCTCAAGTTTTTTAGGAGAAAAATTCAAATTTTTTGTTGATCATTGTCAAAATAGCCTCAAAACAGCATATTTGGACATTATACACAATCATTGATCCCTCTATTCCAATTTCAGAAAAAATTATTTTCAGACATTTTTGTCATTTTTTGGGTTTTTGGAATAAATTATGAATAACTTTGCTCCTGGGTAAGCTTTCCGGCTGAAATTGATAGGAAACCTTTTAAAAGTGCTCATGATCAAGTTGCAAGTGCTCGAGTTATTTTGAGCTCTGACAGCTCAAAATTGAGCTCAAGTTTTGAACTCAAAAAATAATGCGGGATCGATAATTTKTTAACGCTGTAAATAATGTTCGGAAAACTTTCTAAATTACCAGAAATGTTATTGAAGTTGAAGATAAGTACGGAATGATAACTTTCAGTTAGCAAATCAAGCTGTTCACCATAATCAGATTCACCGAATTTCAAGGGCAGTTTTAGAAACTTTAGTTTTGCTTAAATTCGAAACAACAGCTCAGAATATCATAACAACAATTAGTATACAATTCAAATCACTGAAAAAAATGTTTCCTATCAATTTCAGCCGGAAAGCTTACACAGGAGCAAAGTTATTGACAATTTATTCCAAAAACCCAAAAAAAAAAGACAAAAATGTCTGAAAATAATTTTTTCTGAAACTTGAATAGAGGGATCAATGATTGTGTATACTGTCCAAATATGCTGTTTTGAGACTATTTTGCCAATGATGAACAAAAAAATTTGAATTTTTCTCCTAAAAAAACTTGAGATTTTTCATTTTCCAGGGGTGTCCTATAATTATGACGCGGCCTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAATTGATAGGAAACCTTTTA</pcr_primer_p1>
		<pcr_primer_p2>ATTATGGTGAACAGCTTGATTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TGAAATTGATAGGAAACCTTTTAAAAGTGCTCATGATCAAGTTGCAAGTGCTCGAGTTATTTTGAGCTCTGACAGCTCAAAATTGAGCTCAAGTTTTGAACTCAAAAAATAATGCGGGATCGATAATTTTTTAACGCTGTAAATAATGTTCGGAAAACTTTCTAAATTACCAGAAATGTTATTGAAGTTGAAGATAAGTACGGAATGATAACTTTCAGTTAGCAAATCAAGCTGTTCACCATAAT</canonical_amplicon>
		<polymorphic_amplicon>TGAAATTGATAGGAAACCTTTTAAAAGTGCTCATGATCAAGTTGCAAGTGCTCGAGTTATTTTGAGCTCTGACAGCTCAAAATTGAGCTCAAGTTTTGAACTCAAAAAATAATGCGGGATCGATAATTTKTTAACGCTGTAAATAATGTTCGGAAAACTTTCTAAATTACCAGAAATGTTATTGAAGTTGAAGATAAGTACGGAATGATAACTTTCAGTTAGCAAATCAAGCTGTTCACCATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26371</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>55238</contig_pos>
        <strand>+</strand>
        <context>GCTATCGTTA[A/G]GTTGCTCCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTGGGACCAGCGAAAATTAGACGGATTATGAAATGTAGGGCTATCGTTA</left_flank>
        <right_flank>GTTGCTCCTAAATGCTCTTGGATTAAGGAATCTGGCATTTGGAATTCACA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGGTATCTTTTATAGTCTGAAGGCCCGGAAGGAATATTTGGCTTCGGAAACCACGTATCAAATGAACATTCACATAGTGGAGGGCCACTCCAGTTGAGACGTTTAGGAGATGACATTTTTTCGAAAAAATTAATCAGAAACTTTCTAAAGTGTGTGGTTGAACAAACAAGTTTCTTTTTATGTCGGCTGGAAAAGCACTGAGGTGGAATCGCCATGTTTATGTAGATGTTTTTGATGAAGTATGGCTTTGAGGCTTGCTGACACAAAAGTATTTTTTTGAAAGCTGAGATATTATTAATGAGGACTAATATAAAATATTTCGATTTAGGTTAATATATTTCCCTTAGATTCACCCTACTAATCTACGGCCATCTCTTTAGTTCAGTGTTTGATTTCATTTTAGACTAGAAGAACACGTTAGGCTTGTCTGAAGCGTACCACTGGAAAACTTGGGACCAGCGAAAATTAGACGGATTATGAAATGTAGGGCTATCGTTAAGTTGCTCCTAAATGCTCTTGGATTAAGGAATCTGGCATTTGGAATTCACATAGAGCCACTACCAATTCAGGAGGTTAGAGGAGCAGACGACGAGACACGTTGCGTCTCTAACCTCGGAAACTTTAAATGACCGTATCTCGAGTTCTAGATTAGCTAGAAATTTGGTAATTGGACGAAATTGCATGGTTAAAATGGGTTTTCAGATTATTCATAAAAAGGTATTCATTGGAAACATTTATTTTGGCCATTTTCAGGAGTTTGGAGCTCGGCTTTTAAGTTTCCGATCACTTTGAAGGTGTAAAACAGACCTAGATTAAAAACTTTGCATTCACAGAATTGCTAGTTTTTCAGCTATTTGCCGATTTCTGAAACACACCATTTTTGCACATTCTTTGTACTGAAAAAGTGAAAAATGCATCGGTTCAAGTTCCAACCGCCCAGTCTTTGAAAATAGTTCAATCTAACTCAAATCAGTGAAGTGTTGCAATATCGCATTCACC</canonical>
            <polymorphic>GAGGTATCTTTTATAGTCTGAAGGCCCGGAAGGAATATTTGGCTTCGGAAACCACGTATCAAATGAACATTCACATAGTGGAGGGCCACTCCAGTTGAGACGTTTAGGAGATGACATTTTTTCGAAAAAATTAATCAGAAACTTTCTAAAGTGTGTGGTTGAACAAACAAGTTTCTTTTTATGTCGGCTGGAAAAGCACTGAGGTGGAATCGCCATGTTTATGTAGATGTTTTTGATGAAGTATGGCTTTGAGGCTTGCTGACACAAAAGTATTTTTTTGAAAGCTGAGATATTATTAATGAGGACTAATATAAAATATTTCGATTTAGGTTAATATATTTCCCTTAGATTCACCCTACTAATCTACGGCCATCTCTTTAGTTCAGTGTTTGATTTCATTTTAGACTAGAAGAACACGTTAGGCTTGTCTGAAGCGTACCACTGGAAAACTTGGGACCAGCGAAAATTAGACGGATTATGAAATGTAGGGCTATCGTTARGTTGCTCCTAAATGCTCTTGGATTAAGGAATCTGGCATTTGGAATTCACATAGAGCCACTACCAATTCAGGAGGTTAGAGGAGCAGACGACGAGACACGTTGCGTCTCTAACCTCGGAAACTTTAAATGACCGTATCTCGAGTTCTAGATTAGCTAGAAATTTGGTAATTGGACGAAATTGCATGGTTAAAATGGGTTTTCAGATTATTCATAAAAAGGTATTCATTGGAAACATTTATTTTGGCCATTTTCAGGAGTTTGGAGCTCGGCTTTTAAGTTTCCGATCACTTTGAAGGTGTAAAACAGACCTAGATTAAAAACTTTGCATTCACAGAATTGCTAGTTTTTCAGCTATTTGCCGATTTCTGAAACACACCATTTTTGCACATTCTTTGTACTGAAAAAGTGAAAAATGCATCGGTTCAAGTTCCAACCGCCCAGTCTTTGAAAATAGTTCAATCTAACTCAAATCAGTGAAGTGTTGCAATATCGCATTCACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>186 166 165 131 100 86 64 41 35 26</canonical_bands>
                <polymorphic_bands>192 186 165 131 100 86 64 41 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTGTCTGAAGCGTACCACT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTCCAATGAATACCTTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>CTTGTCTGAAGCGTACCACTGGAAAACTTGGGACCAGCGAAAATTAGACGGATTATGAAATGTAGGGCTATCGTTAAGTTGCTCCTAAATGCTCTTGGATTAAGGAATCTGGCATTTGGAATTCACATAGAGCCACTACCAATTCAGGAGGTTAGAGGAGCAGACGACGAGACACGTTGCGTCTCTAACCTCGGAAACTTTAAATGACCGTATCTCGAGTTCTAGATTAGCTAGAAATTTGGTAATTGGACGAAATTGCATGGTTAAAATGGGTTTTCAGATTATTCATAAAAAGGTATTCATTGGAAACA</canonical_amplicon>
		<polymorphic_amplicon>CTTGTCTGAAGCGTACCACTGGAAAACTTGGGACCAGCGAAAATTAGACGGATTATGAAATGTAGGGCTATCGTTARGTTGCTCCTAAATGCTCTTGGATTAAGGAATCTGGCATTTGGAATTCACATAGAGCCACTACCAATTCAGGAGGTTAGAGGAGCAGACGACGAGACACGTTGCGTCTCTAACCTCGGAAACTTTAAATGACCGTATCTCGAGTTCTAGATTAGCTAGAAATTTGGTAATTGGACGAAATTGCATGGTTAAAATGGGTTTTCAGATTATTCATAAAAAGGTATTCATTGGAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26372</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>55263</contig_pos>
        <strand>+</strand>
        <context>CTCTTGGATT[A/T]AGGAATCTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTATGAAATGTAGGGCTATCGTTAAGTTGCTCCTAAATGCTCTTGGATT</left_flank>
        <right_flank>AGGAATCTGGCATTTGGAATTCACATAGAGCCACTACCAATTCAGGAGGT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGGAAGGAATATTTGGCTTCGGAAACCACGTATCAAATGAACATTCACATAGTGGAGGGCCACTCCAGTTGAGACGTTTAGGAGATGACATTTTTTCGAAAAAATTAATCAGAAACTTTCTAAAGTGTGTGGTTGAACAAACAAGTTTCTTTTTATGTCGGCTGGAAAAGCACTGAGGTGGAATCGCCATGTTTATGTAGATGTTTTTGATGAAGTATGGCTTTGAGGCTTGCTGACACAAAAGTATTTTTTTGAAAGCTGAGATATTATTAATGAGGACTAATATAAAATATTTCGATTTAGGTTAATATATTTCCCTTAGATTCACCCTACTAATCTACGGCCATCTCTTTAGTTCAGTGTTTGATTTCATTTTAGACTAGAAGAACACGTTAGGCTTGTCTGAAGCGTACCACTGGAAAACTTGGGACCAGCGAAAATTAGACGGATTATGAAATGTAGGGCTATCGTTAAGTTGCTCCTAAATGCTCTTGGATTAAGGAATCTGGCATTTGGAATTCACATAGAGCCACTACCAATTCAGGAGGTTAGAGGAGCAGACGACGAGACACGTTGCGTCTCTAACCTCGGAAACTTTAAATGACCGTATCTCGAGTTCTAGATTAGCTAGAAATTTGGTAATTGGACGAAATTGCATGGTTAAAATGGGTTTTCAGATTATTCATAAAAAGGTATTCATTGGAAACATTTATTTTGGCCATTTTCAGGAGTTTGGAGCTCGGCTTTTAAGTTTCCGATCACTTTGAAGGTGTAAAACAGACCTAGATTAAAAACTTTGCATTCACAGAATTGCTAGTTTTTCAGCTATTTGCCGATTTCTGAAACACACCATTTTTGCACATTCTTTGTACTGAAAAAGTGAAAAATGCATCGGTTCAAGTTCCAACCGCCCAGTCTTTGAAAATAGTTCAATCTAACTCAAATCAGTGAAGTGTTGCAATATCGCATTCACCTCAGGGACACACACAGCAAACGCAG</canonical>
            <polymorphic>CCGGAAGGAATATTTGGCTTCGGAAACCACGTATCAAATGAACATTCACATAGTGGAGGGCCACTCCAGTTGAGACGTTTAGGAGATGACATTTTTTCGAAAAAATTAATCAGAAACTTTCTAAAGTGTGTGGTTGAACAAACAAGTTTCTTTTTATGTCGGCTGGAAAAGCACTGAGGTGGAATCGCCATGTTTATGTAGATGTTTTTGATGAAGTATGGCTTTGAGGCTTGCTGACACAAAAGTATTTTTTTGAAAGCTGAGATATTATTAATGAGGACTAATATAAAATATTTCGATTTAGGTTAATATATTTCCCTTAGATTCACCCTACTAATCTACGGCCATCTCTTTAGTTCAGTGTTTGATTTCATTTTAGACTAGAAGAACACGTTAGGCTTGTCTGAAGCGTACCACTGGAAAACTTGGGACCAGCGAAAATTAGACGGATTATGAAATGTAGGGCTATCGTTAAGTTGCTCCTAAATGCTCTTGGATTWAGGAATCTGGCATTTGGAATTCACATAGAGCCACTACCAATTCAGGAGGTTAGAGGAGCAGACGACGAGACACGTTGCGTCTCTAACCTCGGAAACTTTAAATGACCGTATCTCGAGTTCTAGATTAGCTAGAAATTTGGTAATTGGACGAAATTGCATGGTTAAAATGGGTTTTCAGATTATTCATAAAAAGGTATTCATTGGAAACATTTATTTTGGCCATTTTCAGGAGTTTGGAGCTCGGCTTTTAAGTTTCCGATCACTTTGAAGGTGTAAAACAGACCTAGATTAAAAACTTTGCATTCACAGAATTGCTAGTTTTTCAGCTATTTGCCGATTTCTGAAACACACCATTTTTGCACATTCTTTGTACTGAAAAAGTGAAAAATGCATCGGTTCAAGTTCCAACCGCCCAGTCTTTGAAAATAGTTCAATCTAACTCAAATCAGTGAAGTGTTGCAATATCGCATTCACCTCAGGGACACACACAGCAAACGCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>211 166 165 106 100 86 64 41 35 26</canonical_bands>
                <polymorphic_bands>211 166 165 126 106 86 64 41 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTATGAAATGTAGGGCTATC</pcr_primer_p1>
		<pcr_primer_p2>TGTTTCCAATGAATACCTTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>GGATTATGAAATGTAGGGCTATCGTTAAGTTGCTCCTAAATGCTCTTGGATTAAGGAATCTGGCATTTGGAATTCACATAGAGCCACTACCAATTCAGGAGGTTAGAGGAGCAGACGACGAGACACGTTGCGTCTCTAACCTCGGAAACTTTAAATGACCGTATCTCGAGTTCTAGATTAGCTAGAAATTTGGTAATTGGACGAAATTGCATGGTTAAAATGGGTTTTCAGATTATTCATAAAAAGGTATTCATTGGAAACA</canonical_amplicon>
		<polymorphic_amplicon>GGATTATGAAATGTAGGGCTATCGTTAAGTTGCTCCTAAATGCTCTTGGATTWAGGAATCTGGCATTTGGAATTCACATAGAGCCACTACCAATTCAGGAGGTTAGAGGAGCAGACGACGAGACACGTTGCGTCTCTAACCTCGGAAACTTTAAATGACCGTATCTCGAGTTCTAGATTAGCTAGAAATTTGGTAATTGGACGAAATTGCATGGTTAAAATGGGTTTTCAGATTATTCATAAAAAGGTATTCATTGGAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26373</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>55287</contig_pos>
        <strand>+</strand>
        <context>TTGGAATTCA[A/C]AYAGAGCCAC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGTTGCTCCTAAATGCTCTTGGATTAAGGAATCTGGCATTTGGAATTCA</left_flank>
        <right_flank>ATAGAGCCACTACCAATTCAGGAGGTTAGAGGAGCAGACGACGAGACACG</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCACGTATCAAATGAACATTCACATAGTGGAGGGCCACTCCAGTTGAGACGTTTAGGAGATGACATTTTTTCGAAAAAATTAATCAGAAACTTTCTAAAGTGTGTGGTTGAACAAACAAGTTTCTTTTTATGTCGGCTGGAAAAGCACTGAGGTGGAATCGCCATGTTTATGTAGATGTTTTTGATGAAGTATGGCTTTGAGGCTTGCTGACACAAAAGTATTTTTTTGAAAGCTGAGATATTATTAATGAGGACTAATATAAAATATTTCGATTTAGGTTAATATATTTCCCTTAGATTCACCCTACTAATCTACGGCCATCTCTTTAGTTCAGTGTTTGATTTCATTTTAGACTAGAAGAACACGTTAGGCTTGTCTGAAGCGTACCACTGGAAAACTTGGGACCAGCGAAAATTAGACGGATTATGAAATGTAGGGCTATCGTTAAGTTGCTCCTAAATGCTCTTGGATTAAGGAATCTGGCATTTGGAATTCACATAGAGCCACTACCAATTCAGGAGGTTAGAGGAGCAGACGACGAGACACGTTGCGTCTCTAACCTCGGAAACTTTAAATGACCGTATCTCGAGTTCTAGATTAGCTAGAAATTTGGTAATTGGACGAAATTGCATGGTTAAAATGGGTTTTCAGATTATTCATAAAAAGGTATTCATTGGAAACATTTATTTTGGCCATTTTCAGGAGTTTGGAGCTCGGCTTTTAAGTTTCCGATCACTTTGAAGGTGTAAAACAGACCTAGATTAAAAACTTTGCATTCACAGAATTGCTAGTTTTTCAGCTATTTGCCGATTTCTGAAACACACCATTTTTGCACATTCTTTGTACTGAAAAAGTGAAAAATGCATCGGTTCAAGTTCCAACCGCCCAGTCTTTGAAAATAGTTCAATCTAACTCAAATCAGTGAAGTGTTGCAATATCGCATTCACCTCAGGGACACACACAGCAAACGCAGTGTCATCCCTAGTGTCTAGGCAAG</canonical>
            <polymorphic>AACCACGTATCAAATGAACATTCACATAGTGGAGGGCCACTCCAGTTGAGACGTTTAGGAGATGACATTTTTTCGAAAAAATTAATCAGAAACTTTCTAAAGTGTGTGGTTGAACAAACAAGTTTCTTTTTATGTCGGCTGGAAAAGCACTGAGGTGGAATCGCCATGTTTATGTAGATGTTTTTGATGAAGTATGGCTTTGAGGCTTGCTGACACAAAAGTATTTTTTTGAAAGCTGAGATATTATTAATGAGGACTAATATAAAATATTTCGATTTAGGTTAATATATTTCCCTTAGATTCACCCTACTAATCTACGGCCATCTCTTTAGTTCAGTGTTTGATTTCATTTTAGACTAGAAGAACACGTTAGGCTTGTCTGAAGCGTACCACTGGAAAACTTGGGACCAGCGAAAATTAGACGGATTATGAAATGTAGGGCTATCGTTAAGTTGCTCCTAAATGCTCTTGGATTAAGGAATCTGGCATTTGGAATTCAMATAGAGCCACTACCAATTCAGGAGGTTAGAGGAGCAGACGACGAGACACGTTGCGTCTCTAACCTCGGAAACTTTAAATGACCGTATCTCGAGTTCTAGATTAGCTAGAAATTTGGTAATTGGACGAAATTGCATGGTTAAAATGGGTTTTCAGATTATTCATAAAAAGGTATTCATTGGAAACATTTATTTTGGCCATTTTCAGGAGTTTGGAGCTCGGCTTTTAAGTTTCCGATCACTTTGAAGGTGTAAAACAGACCTAGATTAAAAACTTTGCATTCACAGAATTGCTAGTTTTTCAGCTATTTGCCGATTTCTGAAACACACCATTTTTGCACATTCTTTGTACTGAAAAAGTGAAAAATGCATCGGTTCAAGTTCCAACCGCCCAGTCTTTGAAAATAGTTCAATCTAACTCAAATCAGTGAAGTGTTGCAATATCGCATTCACCTCAGGGACACACACAGCAAACGCAGTGTCATCCCTAGTGTCTAGGCAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>190 107 89 68 65 58 42 41 39 35 33 28 25 22 19 17 14 12 11 11 11 10 10 8 8 7 5 5 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>190 117 89 68 65 58 42 41 39 35 33 28 25 22 19 17 14 12 11 11 11 10 8 8 7 5 5 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTATGAAATGTAGGGCTATCGT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTCCAATGAATACCTTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>ATTATGAAATGTAGGGCTATCGTTAAGTTGCTCCTAAATGCTCTTGGATTAAGGAATCTGGCATTTGGAATTCACATAGAGCCACTACCAATTCAGGAGGTTAGAGGAGCAGACGACGAGACACGTTGCGTCTCTAACCTCGGAAACTTTAAATGACCGTATCTCGAGTTCTAGATTAGCTAGAAATTTGGTAATTGGACGAAATTGCATGGTTAAAATGGGTTTTCAGATTATTCATAAAAAGGTATTCATTGGAAACA</canonical_amplicon>
		<polymorphic_amplicon>ATTATGAAATGTAGGGCTATCGTTAAGTTGCTCCTAAATGCTCTTGGATTAAGGAATCTGGCATTTGGAATTCAMATAGAGCCACTACCAATTCAGGAGGTTAGAGGAGCAGACGACGAGACACGTTGCGTCTCTAACCTCGGAAACTTTAAATGACCGTATCTCGAGTTCTAGATTAGCTAGAAATTTGGTAATTGGACGAAATTGCATGGTTAAAATGGGTTTTCAGATTATTCATAAAAAGGTATTCATTGGAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26374</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>55289</contig_pos>
        <strand>+</strand>
        <context>GGAATTCAMA[C/T]AGAGCCACTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTGCTCCTAAATGCTCTTGGATTAAGGAATCTGGCATTTGGAATTCACA</left_flank>
        <right_flank>AGAGCCACTACCAATTCAGGAGGTTAGAGGAGCAGACGACGAGACACGTT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACGTATCAAATGAACATTCACATAGTGGAGGGCCACTCCAGTTGAGACGTTTAGGAGATGACATTTTTTCGAAAAAATTAATCAGAAACTTTCTAAAGTGTGTGGTTGAACAAACAAGTTTCTTTTTATGTCGGCTGGAAAAGCACTGAGGTGGAATCGCCATGTTTATGTAGATGTTTTTGATGAAGTATGGCTTTGAGGCTTGCTGACACAAAAGTATTTTTTTGAAAGCTGAGATATTATTAATGAGGACTAATATAAAATATTTCGATTTAGGTTAATATATTTCCCTTAGATTCACCCTACTAATCTACGGCCATCTCTTTAGTTCAGTGTTTGATTTCATTTTAGACTAGAAGAACACGTTAGGCTTGTCTGAAGCGTACCACTGGAAAACTTGGGACCAGCGAAAATTAGACGGATTATGAAATGTAGGGCTATCGTTAAGTTGCTCCTAAATGCTCTTGGATTAAGGAATCTGGCATTTGGAATTCACATAGAGCCACTACCAATTCAGGAGGTTAGAGGAGCAGACGACGAGACACGTTGCGTCTCTAACCTCGGAAACTTTAAATGACCGTATCTCGAGTTCTAGATTAGCTAGAAATTTGGTAATTGGACGAAATTGCATGGTTAAAATGGGTTTTCAGATTATTCATAAAAAGGTATTCATTGGAAACATTTATTTTGGCCATTTTCAGGAGTTTGGAGCTCGGCTTTTAAGTTTCCGATCACTTTGAAGGTGTAAAACAGACCTAGATTAAAAACTTTGCATTCACAGAATTGCTAGTTTTTCAGCTATTTGCCGATTTCTGAAACACACCATTTTTGCACATTCTTTGTACTGAAAAAGTGAAAAATGCATCGGTTCAAGTTCCAACCGCCCAGTCTTTGAAAATAGTTCAATCTAACTCAAATCAGTGAAGTGTTGCAATATCGCATTCACCTCAGGGACACACACAGCAAACGCAGTGTCATCCCTAGTGTCTAGGCAAGTG</canonical>
            <polymorphic>CCACGTATCAAATGAACATTCACATAGTGGAGGGCCACTCCAGTTGAGACGTTTAGGAGATGACATTTTTTCGAAAAAATTAATCAGAAACTTTCTAAAGTGTGTGGTTGAACAAACAAGTTTCTTTTTATGTCGGCTGGAAAAGCACTGAGGTGGAATCGCCATGTTTATGTAGATGTTTTTGATGAAGTATGGCTTTGAGGCTTGCTGACACAAAAGTATTTTTTTGAAAGCTGAGATATTATTAATGAGGACTAATATAAAATATTTCGATTTAGGTTAATATATTTCCCTTAGATTCACCCTACTAATCTACGGCCATCTCTTTAGTTCAGTGTTTGATTTCATTTTAGACTAGAAGAACACGTTAGGCTTGTCTGAAGCGTACCACTGGAAAACTTGGGACCAGCGAAAATTAGACGGATTATGAAATGTAGGGCTATCGTTAAGTTGCTCCTAAATGCTCTTGGATTAAGGAATCTGGCATTTGGAATTCACAYAGAGCCACTACCAATTCAGGAGGTTAGAGGAGCAGACGACGAGACACGTTGCGTCTCTAACCTCGGAAACTTTAAATGACCGTATCTCGAGTTCTAGATTAGCTAGAAATTTGGTAATTGGACGAAATTGCATGGTTAAAATGGGTTTTCAGATTATTCATAAAAAGGTATTCATTGGAAACATTTATTTTGGCCATTTTCAGGAGTTTGGAGCTCGGCTTTTAAGTTTCCGATCACTTTGAAGGTGTAAAACAGACCTAGATTAAAAACTTTGCATTCACAGAATTGCTAGTTTTTCAGCTATTTGCCGATTTCTGAAACACACCATTTTTGCACATTCTTTGTACTGAAAAAGTGAAAAATGCATCGGTTCAAGTTCCAACCGCCCAGTCTTTGAAAATAGTTCAATCTAACTCAAATCAGTGAAGTGTTGCAATATCGCATTCACCTCAGGGACACACACAGCAAACGCAGTGTCATCCCTAGTGTCTAGGCAAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTATGAAATGTAGGGCTATCGT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTCCAATGAATACCTTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>ATTATGAAATGTAGGGCTATCGTTAAGTTGCTCCTAAATGCTCTTGGATTAAGGAATCTGGCATTTGGAATTCACATAGAGCCACTACCAATTCAGGAGGTTAGAGGAGCAGACGACGAGACACGTTGCGTCTCTAACCTCGGAAACTTTAAATGACCGTATCTCGAGTTCTAGATTAGCTAGAAATTTGGTAATTGGACGAAATTGCATGGTTAAAATGGGTTTTCAGATTATTCATAAAAAGGTATTCATTGGAAACA</canonical_amplicon>
		<polymorphic_amplicon>ATTATGAAATGTAGGGCTATCGTTAAGTTGCTCCTAAATGCTCTTGGATTAAGGAATCTGGCATTTGGAATTCACAYAGAGCCACTACCAATTCAGGAGGTTAGAGGAGCAGACGACGAGACACGTTGCGTCTCTAACCTCGGAAACTTTAAATGACCGTATCTCGAGTTCTAGATTAGCTAGAAATTTGGTAATTGGACGAAATTGCATGGTTAAAATGGGTTTTCAGATTATTCATAAAAAGGTATTCATTGGAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26375</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>55374</contig_pos>
        <strand></strand>
        <context>aatgaccgta[T/A]ctcgagttct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GACGACGAGACACGTTGCGTCTCTAACCTCGGAAACTTTAAATGACCGTA</left_flank>
        <right_flank>CTCGAGTTCTAGATTAGCTAGAAATTTGGTAATTGGACGAAATTGCATGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAACTTTCTAAAGTGTGTGGTTGAACAAACAAGTTTCTTTTTATGTCGGCTGGAAAAGCACTGAGGTGGAATCGCCATGTTTATGTAGATGTTTTTGATGAAGTATGGCTTTGAGGCTTGCTGACACAAAAGTATTTTTTTGAAAGCTGAGATATTATTAATGAGGACTAATATAAAATATTTCGATTTAGGTTAATATATTTCCCTTAGATTCACCCTACTAATCTACGGCCATCTCTTTAGTTCAGTGTTTGATTTCATTTTAGACTAGAAGAACACGTTAGGCTTGTCTGAAGCGTACCACTGGAAAACTTGGGACCAGCGAAAATTAGACGGATTATGAAATGTAGGGCTATCGTTAAGTTGCTCCTAAATGCTCTTGGATTAAGGAATCTGGCATTTGGAATTCACATAGAGCCACTACCAATTCAGGAGGTTAGAGGAGCAGACGACGAGACACGTTGCGTCTCTAACCTCGGAAACTTTAAATGACCGTATCTCGAGTTCTAGATTAGCTAGAAATTTGGTAATTGGACGAAATTGCATGGTTAAAATGGGTTTTCAGATTATTCATAAAAAGGTATTCATTGGAAACATTTATTTTGGCCATTTTCAGGAGTTTGGAGCTCGGCTTTTAAGTTTCCGATCACTTTGAAGGTGTAAAACAGACCTAGATTAAAAACTTTGCATTCACAGAATTGCTAGTTTTTCAGCTATTTGCCGATTTCTGAAACACACCATTTTTGCACATTCTTTGTACTGAAAAAGTGAAAAATGCATCGGTTCAAGTTCCAACCGCCCAGTCTTTGAAAATAGTTCAATCTAACTCAAATCAGTGAAGTGTTGCAATATCGCATTCACCTCAGGGACACACACAGCAAACGCAGTGTCATCCCTAGTGTCTAGGCAAGTGAGCAGCGCGTGTGTACATAAAAAGTGTCATACAACCTTTTGGGTTCTGGGATGGCTCCAAAAATTAGTGTTGGCTTGATGTGTTG</canonical>
            <polymorphic>AGAAACTTTCTAAAGTGTGTGGTTGAACAAACAAGTTTCTTTTTATGTCGGCTGGAAAAGCACTGAGGTGGAATCGCCATGTTTATGTAGATGTTTTTGATGAAGTATGGCTTTGAGGCTTGCTGACACAAAAGTATTTTTTTGAAAGCTGAGATATTATTAATGAGGACTAATATAAAATATTTCGATTTAGGTTAATATATTTCCCTTAGATTCACCCTACTAATCTACGGCCATCTCTTTAGTTCAGTGTTTGATTTCATTTTAGACTAGAAGAACACGTTAGGCTTGTCTGAAGCGTACCACTGGAAAACTTGGGACCAGCGAAAATTAGACGGATTATGAAATGTAGGGCTATCGTTAAGTTGCTCCTAAATGCTCTTGGATTAAGGAATCTGGCATTTGGAATTCACATAGAGCCACTACCAATTCAGGAGGTTAGAGGAGCAGACGACGAGACACGTTGCGTCTCTAACCTCGGAAACTTTAAATGACCGTAWCTCGAGTTCTAGATTAGCTAGAAATTTGGTAATTGGACGAAATTGCATGGTTAAAATGGGTTTTCAGATTATTCATAAAAAGGTATTCATTGGAAACATTTATTTTGGCCATTTTCAGGAGTTTGGAGCTCGGCTTTTAAGTTTCCGATCACTTTGAAGGTGTAAAACAGACCTAGATTAAAAACTTTGCATTCACAGAATTGCTAGTTTTTCAGCTATTTGCCGATTTCTGAAACACACCATTTTTGCACATTCTTTGTACTGAAAAAGTGAAAAATGCATCGGTTCAAGTTCCAACCGCCCAGTCTTTGAAAATAGTTCAATCTAACTCAAATCAGTGAAGTGTTGCAATATCGCATTCACCTCAGGGACACACACAGCAAACGCAGTGTCATCCCTAGTGTCTAGGCAAGTGAGCAGCGCGTGTGTACATAAAAAGTGTCATACAACCTTTTGGGTTCTGGGATGGCTCCAAAAATTAGTGTTGGCTTGATGTGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>432 384 107 69 8</canonical_bands>
                <polymorphic_bands>432 384 107 77</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTATGAAATGTAGGGCTATCGT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTCCAATGAATACCTTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>ATTATGAAATGTAGGGCTATCGTTAAGTTGCTCCTAAATGCTCTTGGATTAAGGAATCTGGCATTTGGAATTCACATAGAGCCACTACCAATTCAGGAGGTTAGAGGAGCAGACGACGAGACACGTTGCGTCTCTAACCTCGGAAACTTTAAATGACCGTATCTCGAGTTCTAGATTAGCTAGAAATTTGGTAATTGGACGAAATTGCATGGTTAAAATGGGTTTTCAGATTATTCATAAAAAGGTATTCATTGGAAACA</canonical_amplicon>
		<polymorphic_amplicon>ATTATGAAATGTAGGGCTATCGTTAAGTTGCTCCTAAATGCTCTTGGATTAAGGAATCTGGCATTTGGAATTCACATAGAGCCACTACCAATTCAGGAGGTTAGAGGAGCAGACGACGAGACACGTTGCGTCTCTAACCTCGGAAACTTTAAATGACCGTAWCTCGAGTTCTAGATTAGCTAGAAATTTGGTAATTGGACGAAATTGCATGGTTAAAATGGGTTTTCAGATTATTCATAAAAAGGTATTCATTGGAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26376</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>80346</contig_pos>
        <strand>+</strand>
        <context>GGCTCATCAA[A/G]TTTGAAAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAATACTCAGAAAAGAGCAGGAACGTCAATGGAAGGCGGGGCTCATCAA</left_flank>
        <right_flank>TTTGAAAAAGTCGTGCTATTTAGAATGAAGAAAGAGAAGAGTTTTGAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAAAAACTACGGTGCAGTCATCATCTTCGTCGCACGGAGCATTTTCTCACGGAGCAGCAGCCATCACTCGAATCAAAAAGGAGATTCTAGAAGACGAGGAGCATTCGATGACTCTCGATGAAGTCAGAGAGATTTGGAGGAAGAAGTTCTCTGGAGGAATCCTCCCAGGAAAGAATTTGAGTAAGTGAACACACTTTGAGTTTTTAAAAAAATGTTTGTTGTTTTTTTTTCAGAACTTGGATGTTACTTCTTCGACCCAAGCACGAATGAGGCTCCCCAGAAAGTCAACGACGCCTCCAACTCGTATATTTTCTATAGAAACCAGCGACCGGCGTCAAAAGGATGTGAGTTCATACGATTCAATCTTTTCAACCAGGTCCTTGTGTTTTCAGATTCAAAATGGAACGAGCTGACATTGATGGAGAAAGAAGAGTGGACCAACTTGTGGAGAATACTCAGAAAAGAGCAGGAACGTCAATGGAAGGCGGGGCTCATCAAGTTTGAAAAAGTCGTGCTATTTAGAATGAAGAAAGAGAAGAGTTTTGAATAGTTGCATATTTTATGTAGTGGTGTTTTGTAGTTTGATTGTTCCTATTGCCTGAATTTCGTTGCATTGTTTGTGTGTCATTGTTGTATGGTAACTTTTTGGATTGTATTCTCTTCCGCTTGCTTTCCCTTCCCCACTCGATTGTTCCAATTTTAAGTCTCGTTTTTTTCTCAATTTTCAAGTTAAATCTACCAATTTATTGCCTCTAATAAATCATTGTTATCCATATCCTGGTGTTGTGATTGTGTATTGTACGAATTAACTTTCACCTTTCTCGGATATCTAGATCCCAGATTATCCAACGACGACAATCTTCAGAACTCAACGCTCAACGACCGTGAGAGTTGTTCTTTTCAGTCGCACTGCCCACCACACAAGAAATTTCTACACATCCTTTACTCTGAACCTCTCACTCACTCTCACTCTCACTCTCACTGAATGGACGAAGAGAT</canonical>
            <polymorphic>CTAAAAACTACGGTGCAGTCATCATCTTCGTCGCACGGAGCATTTTCTCACGGAGCAGCAGCCATCACTCGAATCAAAAAGGAGATTCTAGAAGACGAGGAGCATTCGATGACTCTCGATGAAGTCAGAGAGATTTGGAGGAAGAAGTTCTCTGGAGGAATCCTCCCAGGAAAGAATTTGAGTAAGTGAACACACTTTGAGTTTTTAAAAAAATGTTTGTTGTTTTTTTTTCAGAACTTGGATGTTACTTCTTCGACCCAAGCACGAATGAGGCTCCCCAGAAAGTCAACGACGCCTCCAACTCGTATATTTTCTATAGAAACCAGCGACCGGCGTCAAAAGGATGTGAGTTCATACGATTCAATCTTTTCAACCAGGTCCTTGTGTTTTCAGATTCAAAATGGAACGAGCTGACATTGATGGAGAAAGAAGAGTGGACCAACTTGTGGAGAATACTCAGAAAAGAGCAGGAACGTCAATGGAAGGCGGGGCTCATCAARTTTGAAAAAGTCGTGCTATTTAGAATGAAGAAAGAGAAGAGTTTTGAATAGTTGCATATTTTATGTAGTGGTGTTTTGTAGTTTGATTGTTCCTATTGCCTGAATTTCGTTGCATTGTTTGTGTGTCATTGTTGTATGGTAACTTTTTGGATTGTATTCTCTTCCGCTTGCTTTCCCTTCCCCACTCGATTGTTCCAATTTTAAGTCTCGTTTTTTTCTCAATTTTCAAGTTAAATCTACCAATTTATTGCCTCTAATAAATCATTGTTATCCATATCCTGGTGTTGTGATTGTGTATTGTACGAATTAACTTTCACCTTTCTCGGATATCTAGATCCCAGATTATCCAACGACGACAATCTTCAGAACTCAACGCTCAACGACCGTGAGAGTTGTTCTTTTCAGTCGCACTGCCCACCACACAAGAAATTTCTACACATCCTTTACTCTGAACCTCTCACTCACTCTCACTCTCACTCTCACTGAATGGACGAAGAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGTGAGTTCATACGATTCAA</pcr_primer_p1>
		<pcr_primer_p2>GAACAATCAAACTACAAAACACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATGTGAGTTCATACGATTCAATCTTTTCAACCAGGTCCTTGTGTTTTCAGATTCAAAATGGAACGAGCTGACATTGATGGAGAAAGAAGAGTGGACCAACTTGTGGAGAATACTCAGAAAAGAGCAGGAACGTCAATGGAAGGCGGGGCTCATCAAGTTTGAAAAAGTCGTGCTATTTAGAATGAAGAAAGAGAAGAGTTTTGAATAGTTGCATATTTTATGTAGTGGTGTTTTGTAGTTTGATTGTTC</canonical_amplicon>
		<polymorphic_amplicon>GATGTGAGTTCATACGATTCAATCTTTTCAACCAGGTCCTTGTGTTTTCAGATTCAAAATGGAACGAGCTGACATTGATGGAGAAAGAAGAGTGGACCAACTTGTGGAGAATACTCAGAAAAGAGCAGGAACGTCAATGGAAGGCGGGGCTCATCAARTTTGAAAAAGTCGTGCTATTTAGAATGAAGAAAGAGAAGAGTTTTGAATAGTTGCATATTTTATGTAGTGGTGTTTTGTAGTTTGATTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26377</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>86926</contig_pos>
        <strand>+</strand>
        <context>ATACTGAACA[C/T]ACAACTCTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCCCTTGTAGTCCGATAGCATTTTTCGGTTTCGATTGAATACTGAACA</left_flank>
        <right_flank>ACAACTCTTTCTCATCGGCAGGCTGTTTGACTAATTGCGGCTTTTTTGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGAAATGTCAGGAGAATAGAAATATGGGAAATGGAAGTTTTGAAATATGTAGAGGAGAAAAGAATATGAATAATGACAGGGTTTATATCTTATTGGTGGCTCTTGACTATAATCCAATTCTTCCGAATCTGGTCCTCATGCTCCAGCCGGAGCTTCACCGCGTGCACCTTCCAAGTCACATACAGTAATCCATTCTGCGCATTTTTTCGCTCTTCCCATCTCAATTCTGAAATAAGTTATATTACGAAAGGCAAGTTTGATTTCAATTATCTCAATTCCAGTACAAGATATCAGAAAAAGTGTCAACTGATTAATTGTTAATCATCAGAAGTTTTTGGTTAGTTGATAAATTTTTGATAACTTTTACAGAAAATGAGGTTAATTGGCTCAAAGTTAAGGGGTCCCTACTATAACAGGTTTTAAGATATCTTTCTATTATACCTGCTCTTTCCCTTGTAGTCCGATAGCATTTTTCGGTTTCGATTGAATACTGAACATACAACTCTTTCTCATCGGCAGGCTGTTTGACTAATTGCGGCTTTTTTGGATTTTTTGGATCGAACAAGCTGGATTTGTCCTCTAAAAAAGTTCTATTGATTTCAGTTGATCCTAATACAACTCACTAATCATTGGATCTTCCAGATACCAAAAAGAGGAAACTCCTGTTAGTTTTGGTGTCAGAGCGACTGTAGAATTTGGGAGCTCAGGAAGCTTAGGTGGCTGATCAGAATCCAGGAAAATGAATCCTTGCTTTAGTTGATCCTCATGTGTATTTTTCAGTATGACAGCTTTTAATTTCCAGGTCCAAAACAGGAAATCGTGGTTTTGGTGTCTGGATTTGTCCCAATAATCCGCTGGAACATCTCGTTCTACAGCAAGCTAAATTCATCCCAACTCACAGGCGGTTCCCTCATTTACACAGCTTCTTAAGACAAACCATCTGACAAACAGCTCTTTTTCATTCATTGGGTTTTGCACTATTTGTGGGATCTCCAGCT</canonical>
            <polymorphic>TAGGAAATGTCAGGAGAATAGAAATATGGGAAATGGAAGTTTTGAAATATGTAGAGGAGAAAAGAATATGAATAATGACAGGGTTTATATCTTATTGGTGGCTCTTGACTATAATCCAATTCTTCCGAATCTGGTCCTCATGCTCCAGCCGGAGCTTCACCGCGTGCACCTTCCAAGTCACATACAGTAATCCATTCTGCGCATTTTTTCGCTCTTCCCATCTCAATTCTGAAATAAGTTATATTACGAAAGGCAAGTTTGATTTCAATTATCTCAATTCCAGTACAAGATATCAGAAAAAGTGTCAACTGATTAATTGTTAATCATCAGAAGTTTTTGGTTAGTTGATAAATTTTTGATAACTTTTACAGAAAATGAGGTTAATTGGCTCAAAGTTAAGGGGTCCCTACTATAACAGGTTTTAAGATATCTTTCTATTATACCTGCTCTTTCCCTTGTAGTCCGATAGCATTTTTCGGTTTCGATTGAATACTGAACAYACAACTCTTTCTCATCGGCAGGCTGTTTGACTAATTGCGGCTTTTTTGGATTTTTTGGATCGAACAAGCTGGATTTGTCCTCTAAAAAAGTTCTATTGATTTCAGTTGATCCTAATACAACTCACTAATCATTGGATCTTCCAGATACCAAAAAGAGGAAACTCCTGTTAGTTTTGGTGTCAGAGCGACTGTAGAATTTGGGAGCTCAGGAAGCTTAGGTGGCTGATCAGAATCCAGGAAAATGAATCCTTGCTTTAGTTGATCCTCATGTGTATTTTTCAGTATGACAGCTTTTAATTTCCAGGTCCAAAACAGGAAATCGTGGTTTTGGTGTCTGGATTTGTCCCAATAATCCGCTGGAACATCTCGTTCTACAGCAAGCTAAATTCATCCCAACTCACAGGCGGTTCCCTCATTTACACAGCTTCTTAAGACAAACCATCTGACAAACAGCTCTTTTTCATTCATTGGGTTTTGCACTATTTGTGGGATCTCCAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATACCTGCTCTTTCCCTTGTA</pcr_primer_p1>
		<pcr_primer_p2>GCTCTGACACCAAAACTAACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TATACCTGCTCTTTCCCTTGTAGTCCGATAGCATTTTTCGGTTTCGATTGAATACTGAACATACAACTCTTTCTCATCGGCAGGCTGTTTGACTAATTGCGGCTTTTTTGGATTTTTTGGATCGAACAAGCTGGATTTGTCCTCTAAAAAAGTTCTATTGATTTCAGTTGATCCTAATACAACTCACTAATCATTGGATCTTCCAGATACCAAAAAGAGGAAACTCCTGTTAGTTTTGGTGTCAGAGC</canonical_amplicon>
		<polymorphic_amplicon>TATACCTGCTCTTTCCCTTGTAGTCCGATAGCATTTTTCGGTTTCGATTGAATACTGAACAYACAACTCTTTCTCATCGGCAGGCTGTTTGACTAATTGCGGCTTTTTTGGATTTTTTGGATCGAACAAGCTGGATTTGTCCTCTAAAAAAGTTCTATTGATTTCAGTTGATCCTAATACAACTCACTAATCATTGGATCTTCCAGATACCAAAAAGAGGAAACTCCTGTTAGTTTTGGTGTCAGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26378</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>99396</contig_pos>
        <strand>+</strand>
        <context>AACTGGTTCT[A/T]TTTGAATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATAAGGGAAATTTAGAGAAGAAATCTCAGTTGGGAGAAGAAACTGGTTCT</left_flank>
        <right_flank>TTTGAATTTTAAATATGTATGCAAATTGAGGAAATGACTTTTTAGTGTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCACATTTTTATAGTTTGGTTGTCTTTTTTAAAAATGAAAACGCTCATAAAATATCACAAGAGCAAATTTTCGTTTTTCCTTTTTTTTCATGTTCCTTTTATGAATTTCTGGTTTGAAGAATCACAAGCTTGCAAAAAGCTATTTTCTCCATAAACATAGATCCTGGATTCTCAAATATTTCAATTCATTGCTAGTCCATCTGCTCTCCCATAATTATAGGATCTCATTACGTCCCTCTTGGACCCTGACCCTCATTCTTGGCAAATCCAAAAAAAAGAGGGGCCACACGATGACACCCAATTTGAAAAATGGGAATCTTATTTGTCAAATAAGGAGGGGGACCAGGGTACATTGATGAATCGAAAAAGGAAGAGCCGGGGAGAAATTGAGGTGGCGAATGGCGTGAGGACAATAATGGATGAGCTGCTTTTTGGTTTTTTTAGGAATAAGGGAAATTTAGAGAAGAAATCTCAGTTGGGAGAAGAAACTGGTTCTATTTGAATTTTAAATATGTATGCAAATTGAGGAAATGACTTTTTAGTGTTTTCTAATTTTTTATTTTTCCAAACAATGCATAATTAATTAGATTCAATTAGTTTGTAAATTTATTAGCAATATTGATGTTCTAACACAAATGAATTTTGCGAAAAATTAAAGTCAACAAATCAGGCTCCGTTTTTCTCTTTTTTTTCTTCCCTTTTTTTTCATTTCCAAATCTATAATGCGTTTTTGTTTTGGTTTCCGCTGCACCATCCAAACCTCCCTTTTGTCACCGCAGCTTTCAAATTTTATTTTTTCATATTTCCGGTTGAAAAATGAAGAGCAATGTAGCATGTGATTACTACCCCGAGGACTCCAAAACACCCACTAATTGTAAGTTGTTGAATGTTTTTTCCTCGACTACGCGTTAGGATACCAGAAATTGTGTTTTTTGTCTTTTTATTCAGGCTTTTCCAGATATTTCGAAACATAGAAATTTGATTTTTTTTCAAGTGT</canonical>
            <polymorphic>AAATCACATTTTTATAGTTTGGTTGTCTTTTTTAAAAATGAAAACGCTCATAAAATATCACAAGAGCAAATTTTCGTTTTTCCTTTTTTTTCATGTTCCTTTTATGAATTTCTGGTTTGAAGAATCACAAGCTTGCAAAAAGCTATTTTCTCCATAAACATAGATCCTGGATTCTCAAATATTTCAATTCATTGCTAGTCCATCTGCTCTCCCATAATTATAGGATCTCATTACGTCCCTCTTGGACCCTGACCCTCATTCTTGGCAAATCCAAAAAAAAGAGGGGCCACACGATGACACCCAATTTGAAAAATGGGAATCTTATTTGTCAAATAAGGAGGGGGACCAGGGTACATTGATGAATCGAAAAAGGAAGAGCCGGGGAGAAATTGAGGTGGCGAATGGCGTGAGGACAATAATGGATGAGCTGCTTTTTGGTTTTTTTAGGAATAAGGGAAATTTAGAGAAGAAATCTCAGTTGGGAGAAGAAACTGGTTCTWTTTGAATTTTAAATATGTATGCAAATTGAGGAAATGACTTTTTAGTGTTTTCTAATTTTTTATTTTTCCAAACAATGCATAATTAATTAGATTCAATTAGTTTGTAAATTTATTAGCAATATTGATGTTCTAACACAAATGAATTTTGCGAAAAATTAAAGTCAACAAATCAGGCTCCGTTTTTCTCTTTTTTTTCTTCCCTTTTTTTTCATTTCCAAATCTATAATGCGTTTTTGTTTTGGTTTCCGCTGCACCATCCAAACCTCCCTTTTGTCACCGCAGCTTTCAAATTTTATTTTTTCATATTTCCGGTTGAAAAATGAAGAGCAATGTAGCATGTGATTACTACCCCGAGGACTCCAAAACACCCACTAATTGTAAGTTGTTGAATGTTTTTTCCTCGACTACGCGTTAGGATACCAGAAATTGTGTTTTTTGTCTTTTTATTCAGGCTTTTCCAGATATTTCGAAACATAGAAATTTGATTTTTTTTCAAGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAATAAGGGAAATTTAGAGAAG</pcr_primer_p1>
		<pcr_primer_p2>CCTGATTTGTTGACTTTAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>GGAATAAGGGAAATTTAGAGAAGAAATCTCAGTTGGGAGAAGAAACTGGTTCTATTTGAATTTTAAATATGTATGCAAATTGAGGAAATGACTTTTTAGTGTTTTCTAATTTTTTATTTTTCCAAACAATGCATAATTAATTAGATTCAATTAGTTTGTAAATTTATTAGCAATATTGATGTTCTAACACAAATGAATTTTGCGAAAAATTAAAGTCAACAAATCAGG</canonical_amplicon>
		<polymorphic_amplicon>GGAATAAGGGAAATTTAGAGAAGAAATCTCAGTTGGGAGAAGAAACTGGTTCTWTTTGAATTTTAAATATGTATGCAAATTGAGGAAATGACTTTTTAGTGTTTTCTAATTTTTTATTTTTCCAAACAATGCATAATTAATTAGATTCAATTAGTTTGTAAATTTATTAGCAATATTGATGTTCTAACACAAATGAATTTTGCGAAAAATTAAAGTCAACAAATCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26379</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>99514</contig_pos>
        <strand>+</strand>
        <context>ATTTATTAGC[C/T]ATATTGATGT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAAACAATGCATAATTAATTAGATTCAATTAGTTTGTAAATTTATTAGC</left_flank>
        <right_flank>ATATTGATGTTCTAACACAAATGAATTTTGCGAAAAATTAAAGTCAACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGAATCACAAGCTTGCAAAAAGCTATTTTCTCCATAAACATAGATCCTGGATTCTCAAATATTTCAATTCATTGCTAGTCCATCTGCTCTCCCATAATTATAGGATCTCATTACGTCCCTCTTGGACCCTGACCCTCATTCTTGGCAAATCCAAAAAAAAGAGGGGCCACACGATGACACCCAATTTGAAAAATGGGAATCTTATTTGTCAAATAAGGAGGGGGACCAGGGTACATTGATGAATCGAAAAAGGAAGAGCCGGGGAGAAATTGAGGTGGCGAATGGCGTGAGGACAATAATGGATGAGCTGCTTTTTGGTTTTTTTAGGAATAAGGGAAATTTAGAGAAGAAATCTCAGTTGGGAGAAGAAACTGGTTCTATTTGAATTTTAAATATGTATGCAAATTGAGGAAATGACTTTTTAGTGTTTTCTAATTTTTTATTTTTCCAAACAATGCATAATTAATTAGATTCAATTAGTTTGTAAATTTATTAGCAATATTGATGTTCTAACACAAATGAATTTTGCGAAAAATTAAAGTCAACAAATCAGGCTCCGTTTTTCTCTTTTTTTTCTTCCCTTTTTTTTCATTTCCAAATCTATAATGCGTTTTTGTTTTGGTTTCCGCTGCACCATCCAAACCTCCCTTTTGTCACCGCAGCTTTCAAATTTTATTTTTTCATATTTCCGGTTGAAAAATGAAGAGCAATGTAGCATGTGATTACTACCCCGAGGACTCCAAAACACCCACTAATTGTAAGTTGTTGAATGTTTTTTCCTCGACTACGCGTTAGGATACCAGAAATTGTGTTTTTTGTCTTTTTATTCAGGCTTTTCCAGATATTTCGAAACATAGAAATTTGATTTTTTTTCAAGTGTGTTCAAAAAAACCTATGTGTCATCACCAATTTTTTTGTAATGGTTTTCTTTTTTCGCAATTGAAAAATAAACAGAATCATTTTTATTTTTCGTTGTATGGGAAAGTTGATCATTCAGA</canonical>
            <polymorphic>GAAGAATCACAAGCTTGCAAAAAGCTATTTTCTCCATAAACATAGATCCTGGATTCTCAAATATTTCAATTCATTGCTAGTCCATCTGCTCTCCCATAATTATAGGATCTCATTACGTCCCTCTTGGACCCTGACCCTCATTCTTGGCAAATCCAAAAAAAAGAGGGGCCACACGATGACACCCAATTTGAAAAATGGGAATCTTATTTGTCAAATAAGGAGGGGGACCAGGGTACATTGATGAATCGAAAAAGGAAGAGCCGGGGAGAAATTGAGGTGGCGAATGGCGTGAGGACAATAATGGATGAGCTGCTTTTTGGTTTTTTTAGGAATAAGGGAAATTTAGAGAAGAAATCTCAGTTGGGAGAAGAAACTGGTTCTATTTGAATTTTAAATATGTATGCAAATTGAGGAAATGACTTTTTAGTGTTTTCTAATTTTTTATTTTTCCAAACAATGCATAATTAATTAGATTCAATTAGTTTGTAAATTTATTAGCYATATTGATGTTCTAACACAAATGAATTTTGCGAAAAATTAAAGTCAACAAATCAGGCTCCGTTTTTCTCTTTTTTTTCTTCCCTTTTTTTTCATTTCCAAATCTATAATGCGTTTTTGTTTTGGTTTCCGCTGCACCATCCAAACCTCCCTTTTGTCACCGCAGCTTTCAAATTTTATTTTTTCATATTTCCGGTTGAAAAATGAAGAGCAATGTAGCATGTGATTACTACCCCGAGGACTCCAAAACACCCACTAATTGTAAGTTGTTGAATGTTTTTTCCTCGACTACGCGTTAGGATACCAGAAATTGTGTTTTTTGTCTTTTTATTCAGGCTTTTCCAGATATTTCGAAACATAGAAATTTGATTTTTTTTCAAGTGTGTTCAAAAAAACCTATGTGTCATCACCAATTTTTTTGTAATGGTTTTCTTTTTTCGCAATTGAAAAATAAACAGAATCATTTTTATTTTTCGTTGTATGGGAAAGTTGATCATTCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>498 440 62</canonical_bands>
                <polymorphic_bands>938 62</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTGGGAGAAGAAACTGGT</pcr_primer_p1>
		<pcr_primer_p2>GCATTATAGATTTGGAAATGAAA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AGTTGGGAGAAGAAACTGGTTCTATTTGAATTTTAAATATGTATGCAAATTGAGGAAATGACTTTTTAGTGTTTTCTAATTTTTTATTTTTCCAAACAATGCATAATTAATTAGATTCAATTAGTTTGTAAATTTATTAGCAATATTGATGTTCTAACACAAATGAATTTTGCGAAAAATTAAAGTCAACAAATCAGGCTCCGTTTTTCTCTTTTTTTTCTTCCCTTTTTTTTCATTTCCAAATCTATAATGC</canonical_amplicon>
		<polymorphic_amplicon>AGTTGGGAGAAGAAACTGGTTCTATTTGAATTTTAAATATGTATGCAAATTGAGGAAATGACTTTTTAGTGTTTTCTAATTTTTTATTTTTCCAAACAATGCATAATTAATTAGATTCAATTAGTTTGTAAATTTATTAGCYATATTGATGTTCTAACACAAATGAATTTTGCGAAAAATTAAAGTCAACAAATCAGGCTCCGTTTTTCTCTTTTTTTTCTTCCCTTTTTTTTCATTTCCAAATCTATAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26380</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>101552</contig_pos>
        <strand>+</strand>
        <context>tATGTGGAAT[G/T]TTATATTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGAGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATGTGGAAT</left_flank>
        <right_flank>TTATATTTCAAACATTTTCTGTAAAAAACATGTATTTTCGAAAAAGTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTTGAAATTCCCTATTTACAGCTGACAAGGGAACCTTTCAAGTGAAGGTAGGAGTCAGCAAAAACCACCTATATAGATCGAAAGAGCATAGTCGGAAACCTATAAATCCGTTTTCAAAGTCTGCTTACGAGACCTTTGAAGTGCTGAAATTTCAGTTTCAGTGCCAAAAATTTCATTTTCAGTGTTAAATCGGCAATTTTCAAACTTGATTTTCTCCACTCCTAAAAGGTTTTAGGACTTGAAACTTTTTTATTTGAATTGAAATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTGTTGAAAGATATCAAAAAGTGGTTAACTAGTAAAATGTTTATCAGGATATCAGCAACATTTTACTAGTTAGCCACTTTTTTATATCTTTCACAGAAAATGAGATATATAGGATCAAAGAGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATGTGGAATGTTATATTTCAAACATTTTCTGTAAAAAACATGTATTTTCGAAAAAGTTTTGGGAAGTTTCAAAATTTGCCTAGACTTTCGGTGGGACCAAAAAAAAAATTTTTTTCTGGAAAATGTAGAAAATGACTGAAATATAAATTTCAAATCGGGGATCCTCTAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>CTTTTTGAAATTCCCTATTTACAGCTGACAAGGGAACCTTTCAAGTGAAGGTAGGAGTCAGCAAAAACCACCTATATAGATCGAAAGAGCATAGTCGGAAACCTATAAATCCGTTTTCAAAGTCTGCTTACGAGACCTTTGAAGTGCTGAAATTTCAGTTTCAGTGCCAAAAATTTCATTTTCAGTGTTAAATCGGCAATTTTCAAACTTGATTTTCTCCACTCCTAAAAGGTTTTAGGACTTGAAACTTTTTTATTTGAATTGAAATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTGTTGAAAGATATCAAAAAGTGGTTAACTAGTAAAATGTTTATCAGGATATCAGCAACATTTTACTAGTTAGCCACTTTTTTATATCTTTCACAGAAAATGAGATATATAGGATCAAAGAGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATGTGGAATKTTATATTTCAAACATTTTCTGTAAAAAACATGTATTTTCGAAAAAGTTTTGGGAAGTTTCAAAATTTGCCTAGACTTTCGGTGGGACCAAAAAAAAAATTTTTTTCTGGAAAATGTAGAAAATGACTGAAATATAAATTTCAAATCGGGGATCCTCTAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAATTCCCTATTTACAGC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGAAACTTCCCAAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>562</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAATTCCCTATTTACAGCTGACAAGGGAACCTTTCAAGTGAAGGTAGGAGTCAGCAAAAACCACCTATATAGATCGAAAGAGCATAGTCGGAAACCTATAAATCCGTTTTCAAAGTCTGCTTACGAGACCTTTGAAGTGCTGAAATTTCAGTTTCAGTGCCAAAAATTTCATTTTCAGTGTTAAATCGGCAATTTTCAAACTTGATTTTCTCCACTCCTAAAAGGTTTTAGGACTTGAAACTTTTTTATTTGAATTGAAATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTGTTGAAAGATATCAAAAAGTGGTTAACTAGTAAAATGTTTATCAGGATATCAGCAACATTTTACTAGTTAGCCACTTTTTTATATCTTTCACAGAAAATGAGATATATAGGATCAAAGAGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATGTGGAATGTTATATTTCAAACATTTTCTGTAAAAAACATGTATTTTCGAAAAAGTTTTGGGAAGTTTCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAATTCCCTATTTACAGCTGACAAGGGAACCTTTCAAGTGAAGGTAGGAGTCAGCAAAAACCACCTATATAGATCGAAAGAGCATAGTCGGAAACCTATAAATCCGTTTTCAAAGTCTGCTTACGAGACCTTTGAAGTGCTGAAATTTCAGTTTCAGTGCCAAAAATTTCATTTTCAGTGTTAAATCGGCAATTTTCAAACTTGATTTTCTCCACTCCTAAAAGGTTTTAGGACTTGAAACTTTTTTATTTGAATTGAAATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTGTTGAAAGATATCAAAAAGTGGTTAACTAGTAAAATGTTTATCAGGATATCAGCAACATTTTACTAGTTAGCCACTTTTTTATATCTTTCACAGAAAATGAGATATATAGGATCAAAGAGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATGTGGAATKTTATATTTCAAACATTTTCTGTAAAAAACATGTATTTTCGAAAAAGTTTTGGGAAGTTTCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26381</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>102417</contig_pos>
        <strand></strand>
        <context>TATGTGGAAT[G/T]TTATATTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGGATAATAGTATAGAAGAGTTCTATTAGAGGTTTTACGGTATGTGGAAT</left_flank>
        <right_flank>TTATATTTCAAACATTTTCTGTAAAAAACATGTATTTTCGAAAAAGTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCATTTCTCATCTTCTAAATTAATGTCGGCGTCCTCTCGATATTCCACACTCTTTCCATTTTGAGACCATCATCCAACTAATAACTCCAAAAGAAGAAGAAGAAGCTCGTGTCATGTCGTGTTGGATGTCAATTGGTTTGTCTCTCTGGAATACCTCAGCCGTAATGCACCCATATGGTGGTGTAGTCGTTCACTGCATTCACTCTGTTTTTCCTAAAGTATTGTAGTGCTCATCTGAAGCGTGAGAATATGTGTGTAGAAACTATGAATGCACGGATTTTCGCGGATAATAGTATAGAAGAGTTCTATTAGAGGTTTTACGGTATGTGGAATGTTATATTTCAAACATTTTCTGTAAAAAACATGTATTTTCGAAAAAGTTTTGGGAAGTTTCAAAATTTGCCTAGACTTTCGGTGGGACCAAAAAAAAAATTTTTTTTGGAAAATGTAGAAAATGACTGAAATATGAAATTTCAAATCATTTTGAGTGTAACAAAAAAATTTCAAGTCCTAAAACCTCCAAGGTGTAGAGAAAATCAAGTTTGAAAATTGCCGATTTAACACTGAAAATGGAATTTCTGGCACTGAAACGAAATTTCAGCACTTCAAAGGTCTCGTAAGCAGACTTTGAAAACGGATTTATAGGTTTTCAAACATGCTCTTTCGATCTATGCAAATGGTTTCTGCTGACTCCTACCTTCACTTAAAAGGTTCCCTTGTGAGCCACTTTTTTAACTATTAAATCTAAATTCAAGTGGAAAAAAAACATGCAAGGTGATTTTCAAAAACTTATCACTTCCTTGACAAAGCCTGACTTTCTTTCTGTTTCTTTTT</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCATTTCTCATCTTCTAAATTAATGTCGGCGTCCTCTCGATATTCCACACTCTTTCCATTTTGAGACCATCATCCAACTAATAACTCCAAAAGAAGAAGAAGAAGCTCGTGTCATGTCGTGTTGGATGTCAATTGGTTTGTCTCTCTGGAATACCTCAGCCGTAATGCACCCATATGGTGGTGTAGTCGTTCACTGCATTCACTCTGTTTTTCCTAAAGTATTGTAGTGCTCATCTGAAGCGTGAGAATATGTGTGTAGAAACTATGAATGCACGGATTTTCGCGGATAATAGTATAGAAGAGTTCTATTAGAGGTTTTACGGTATGTGGAATKTTATATTTCAAACATTTTCTGTAAAAAACATGTATTTTCGAAAAAGTTTTGGGAAGTTTCAAAATTTGCCTAGACTTTCGGTGGGACCAAAAAAAAAATTTTTTTTGGAAAATGTAGAAAATGACTGAAATATGAAATTTCAAATCATTTTGAGTGTAACAAAAAAATTTCAAGTCCTAAAACCTCCAAGGTGTAGAGAAAATCAAGTTTGAAAATTGCCGATTTAACACTGAAAATGGAATTTCTGGCACTGAAACGAAATTTCAGCACTTCAAAGGTCTCGTAAGCAGACTTTGAAAACGGATTTATAGGTTTTCAAACATGCTCTTTCGATCTATGCAAATGGTTTCTGCTGACTCCTACCTTCACTTAAAAGGTTCCCTTGTGAGCCACTTTTTTAACTATTAAATCTAAATTCAAGTGGAAAAAAAACATGCAAGGTGATTTTCAAAAACTTATCACTTCCTTGACAAAGCCTGACTTTCTTTCTGTTTCTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATGGTGGTGTAGTCGTTCA</pcr_primer_p1>
		<pcr_primer_p2>AAAGTCTAGGCAAATTTTGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>ATATGGTGGTGTAGTCGTTCACTGCATTCACTCTGTTTTTCCTAAAGTATTGTAGTGCTCATCTGAAGCGTGAGAATATGTGTGTAGAAACTATGAATGCACGGATTTTCGCGGATAATAGTATAGAAGAGTTCTATTAGAGGTTTTACGGTATGTGGAATGTTATATTTCAAACATTTTCTGTAAAAAACATGTATTTTCGAAAAAGTTTTGGGAAGTTTCAAAATTTGCCTAGACTTT</canonical_amplicon>
		<polymorphic_amplicon>ATATGGTGGTGTAGTCGTTCACTGCATTCACTCTGTTTTTCCTAAAGTATTGTAGTGCTCATCTGAAGCGTGAGAATATGTGTGTAGAAACTATGAATGCACGGATTTTCGCGGATAATAGTATAGAAGAGTTCTATTAGAGGTTTTACGGTATGTGGAATKTTATATTTCAAACATTTTCTGTAAAAAACATGTATTTTCGAAAAAGTTTTGGGAAGTTTCAAAATTTGCCTAGACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26382</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>102605</contig_pos>
        <strand></strand>
        <context>taaaacctcc[A/T]aggtgtagag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCAAATCATTTTGAGTGTAACAAAAAAATTTCAAGTCCTAAAACCTCC</left_flank>
        <right_flank>AGGTGTAGAGAAAATCAAGTTTGAAAATTGCCGATTTAACACTGAAAATG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTCGGCGTCCTCTCGATATTCCACACTCTTTCCATTTTGAGACCATCATCCAACTAATAACTCCAAAAGAAGAAGAAGAAGCTCGTGTCATGTCGTGTTGGATGTCAATTGGTTTGTCTCTCTGGAATACCTCAGCCGTAATGCACCCATATGGTGGTGTAGTCGTTCACTGCATTCACTCTGTTTTTCCTAAAGTATTGTAGTGCTCATCTGAAGCGTGAGAATATGTGTGTAGAAACTATGAATGCACGGATTTTCGCGGATAATAGTATAGAAGAGTTCTATTAGAGGTTTTACGGTATGTGGAATGTTATATTTCAAACATTTTCTGTAAAAAACATGTATTTTCGAAAAAGTTTTGGGAAGTTTCAAAATTTGCCTAGACTTTCGGTGGGACCAAAAAAAAAATTTTTTTTGGAAAATGTAGAAAATGACTGAAATATGAAATTTCAAATCATTTTGAGTGTAACAAAAAAATTTCAAGTCCTAAAACCTCCAAGGTGTAGAGAAAATCAAGTTTGAAAATTGCCGATTTAACACTGAAAATGGAATTTCTGGCACTGAAACGAAATTTCAGCACTTCAAAGGTCTCGTAAGCAGACTTTGAAAACGGATTTATAGGTTTTCAAACATGCTCTTTCGATCTATGCAAATGGTTTCTGCTGACTCCTACCTTCACTTAAAAGGTTCCCTTGTGAGCCACTTTTTTAACTATTAAATCTAAATTCAAGTGGAAAAAAAACATGCAAGGTGATTTTCAAAAACTTATCACTTCCTTGACAAAGCCTGACTTTCTTTCTGTTTCTTTTTTGTCTTTTGCTGTCCAAACGAATTCCCATACTTTTTTTCTTATATACCTACATTCCCACACTCTATGAAACGATTCCCGGAAAAGCGTAAAAACTGCAAATTGTACGTAAAAATTTTTAGCTGGAAAAAGGGAGAAAGTACAGATTTCAGTCTTTGCGATTCCGTCATGTTTTGTTTTCTGGTCTTGA</canonical>
            <polymorphic>ATGTCGGCGTCCTCTCGATATTCCACACTCTTTCCATTTTGAGACCATCATCCAACTAATAACTCCAAAAGAAGAAGAAGAAGCTCGTGTCATGTCGTGTTGGATGTCAATTGGTTTGTCTCTCTGGAATACCTCAGCCGTAATGCACCCATATGGTGGTGTAGTCGTTCACTGCATTCACTCTGTTTTTCCTAAAGTATTGTAGTGCTCATCTGAAGCGTGAGAATATGTGTGTAGAAACTATGAATGCACGGATTTTCGCGGATAATAGTATAGAAGAGTTCTATTAGAGGTTTTACGGTATGTGGAATGTTATATTTCAAACATTTTCTGTAAAAAACATGTATTTTCGAAAAAGTTTTGGGAAGTTTCAAAATTTGCCTAGACTTTCGGTGGGACCAAAAAAAAAATTTTTTTTGGAAAATGTAGAAAATGACTGAAATATGAAATTTCAAATCATTTTGAGTGTAACAAAAAAATTTCAAGTCCTAAAACCTCCWAGGTGTAGAGAAAATCAAGTTTGAAAATTGCCGATTTAACACTGAAAATGGAATTTCTGGCACTGAAACGAAATTTCAGCACTTCAAAGGTCTCGTAAGCAGACTTTGAAAACGGATTTATAGGTTTTCAAACATGCTCTTTCGATCTATGCAAATGGTTTCTGCTGACTCCTACCTTCACTTAAAAGGTTCCCTTGTGAGCCACTTTTTTAACTATTAAATCTAAATTCAAGTGGAAAAAAAACATGCAAGGTGATTTTCAAAAACTTATCACTTCCTTGACAAAGCCTGACTTTCTTTCTGTTTCTTTTTTGTCTTTTGCTGTCCAAACGAATTCCCATACTTTTTTTCTTATATACCTACATTCCCACACTCTATGAAACGATTCCCGGAAAAGCGTAAAAACTGCAAATTGTACGTAAAAATTTTTAGCTGGAAAAAGGGAGAAAGTACAGATTTCAGTCTTTGCGATTCCGTCATGTTTTGTTTTCTGGTCTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAAAATTTGCCTAGACTTTC</pcr_primer_p1>
		<pcr_primer_p2>AAATCACCTTGCATGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>390</pcr_amplicon_size>
		<canonical_amplicon>TTCAAAATTTGCCTAGACTTTCGGTGGGACCAAAAAAAAAATTTTTTTTGGAAAATGTAGAAAATGACTGAAATATGAAATTTCAAATCATTTTGAGTGTAACAAAAAAATTTCAAGTCCTAAAACCTCCAAGGTGTAGAGAAAATCAAGTTTGAAAATTGCCGATTTAACACTGAAAATGGAATTTCTGGCACTGAAACGAAATTTCAGCACTTCAAAGGTCTCGTAAGCAGACTTTGAAAACGGATTTATAGGTTTTCAAACATGCTCTTTCGATCTATGCAAATGGTTTCTGCTGACTCCTACCTTCACTTAAAAGGTTCCCTTGTGAGCCACTTTTTTAACTATTAAATCTAAATTCAAGTGGAAAAAAAACATGCAAGGTGATTT</canonical_amplicon>
		<polymorphic_amplicon>TTCAAAATTTGCCTAGACTTTCGGTGGGACCAAAAAAAAAATTTTTTTTGGAAAATGTAGAAAATGACTGAAATATGAAATTTCAAATCATTTTGAGTGTAACAAAAAAATTTCAAGTCCTAAAACCTCCWAGGTGTAGAGAAAATCAAGTTTGAAAATTGCCGATTTAACACTGAAAATGGAATTTCTGGCACTGAAACGAAATTTCAGCACTTCAAAGGTCTCGTAAGCAGACTTTGAAAACGGATTTATAGGTTTTCAAACATGCTCTTTCGATCTATGCAAATGGTTTCTGCTGACTCCTACCTTCACTTAAAAGGTTCCCTTGTGAGCCACTTTTTTAACTATTAAATCTAAATTCAAGTGGAAAAAAAACATGCAAGGTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26383</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>105606</contig_pos>
        <strand>+</strand>
        <context>AGTTTTCTGG[C/T]ACAAACGTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGTTCGAAGGCAAGATAATCATCTCCGAGCGATTTGGTGAGTTTTCTGG</left_flank>
        <right_flank>ACAAACGTCCGGATTTTTTCCTCTAATTTTCAGACATCCGATGCTTCTTG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAGGAGTTAGGAGAATTGAAAGGAGCCAAAACTCGTCTGGAAACCGAAAATTTGGCGCAGAAGCAGGATCTGGAGAGGGTGACAAATTTGTCGTGCAAAACGGGTCAAGAGAACACAGCGTTGAAATCTAGGAATGTATATTTGGTGATGAGAGTGAAAGTTCTTGAAGGAGGTGAGCTTGAATTTCTCTGGAAAGATGAAAAATTACGAATTCTAGAATTGGCTAAAAGTCATGGACGCCAATCGTCCGCAGCTCCTATTCCAGCCGTCGACCTATCTGACGGAACTACCAGCATCAAAAAAGAGATTGTAGAAGATCATGACGACATCCGACCAGACCATGAAGTCAGAGTGGTGGCTATGGTCAAGAGCAAGAAGAAGGCAATCAAAAGAGAGGTAATAGAAATGCCAAAAACTGCAAAAGAGGCCGTGGAACGGTATGAGGAAATGTTCGAAGGCAAGATAATCATCTCCGAGCGATTTGGTGAGTTTTCTGGCACAAACGTCCGGATTTTTTCCTCTAATTTTCAGACATCCGATGCTTCTTGTTTGACAAAACCGAGCCGGGTGAAGAAAAAAATGGAAAATGGGTGCCGCGAAAAGTTTTGAAGGCGTGCCAGCTCAGAAACTTCTATCAGCACTTCCGGCCGAAAAGAGAAAGTGAGTTTTATATTTCTGGGAAGTTTATATTTTAAAGATTTTCAGATCCAGAATGGAAAGAAGTGAAAAACGATGCGAAGGTTGAAGAGAGGTGGAGGAAGAGATGGATGGCGGTGAGGGAGGAGCAAATTGCTCAGTACCATGCTGGACTAATCTTCTTTAATGATGATTATAAGAATTTGAATTTGTAAATGAGATTTTTTCGATTGTATATGTCTATATAAGATATCTAAAGGGTTTTCTTTGTAGTTCGTCAGATTTTTCTCTTGTTCAGTTTCCCCGAATTCTCAAATATCATGCCTCTTTTTCCGCTTCTTCCCATTGATTCTTATGTATCT</canonical>
            <polymorphic>AAAAGGAGTTAGGAGAATTGAAAGGAGCCAAAACTCGTCTGGAAACCGAAAATTTGGCGCAGAAGCAGGATCTGGAGAGGGTGACAAATTTGTCGTGCAAAACGGGTCAAGAGAACACAGCGTTGAAATCTAGGAATGTATATTTGGTGATGAGAGTGAAAGTTCTTGAAGGAGGTGAGCTTGAATTTCTCTGGAAAGATGAAAAATTACGAATTCTAGAATTGGCTAAAAGTCATGGACGCCAATCGTCCGCAGCTCCTATTCCAGCCGTCGACCTATCTGACGGAACTACCAGCATCAAAAAAGAGATTGTAGAAGATCATGACGACATCCGACCAGACCATGAAGTCAGAGTGGTGGCTATGGTCAAGAGCAAGAAGAAGGCAATCAAAAGAGAGGTAATAGAAATGCCAAAAACTGCAAAAGAGGCCGTGGAACGGTATGAGGAAATGTTCGAAGGCAAGATAATCATCTCCGAGCGATTTGGTGAGTTTTCTGGYACAAACGTCCGGATTTTTTCCTCTAATTTTCAGACATCCGATGCTTCTTGTTTGACAAAACCGAGCCGGGTGAAGAAAAAAATGGAAAATGGGTGCCGCGAAAAGTTTTGAAGGCGTGCCAGCTCAGAAACTTCTATCAGCACTTCCGGCCGAAAAGAGAAAGTGAGTTTTATATTTCTGGGAAGTTTATATTTTAAAGATTTTCAGATCCAGAATGGAAAGAAGTGAAAAACGATGCGAAGGTTGAAGAGAGGTGGAGGAAGAGATGGATGGCGGTGAGGGAGGAGCAAATTGCTCAGTACCATGCTGGACTAATCTTCTTTAATGATGATTATAAGAATTTGAATTTGTAAATGAGATTTTTTCGATTGTATATGTCTATATAAGATATCTAAAGGGTTTTCTTTGTAGTTCGTCAGATTTTTCTCTTGTTCAGTTTCCCCGAATTCTCAAATATCATGCCTCTTTTTCCGCTTCTTCCCATTGATTCTTATGTATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>222 179 83 75 71 62 55 32 29 24 23 23 23 22 20 19 14 12 9 3</canonical_bands>
                <polymorphic_bands>222 179 83 83 75 62 55 32 29 24 23 23 23 22 20 19 14 9 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGTAATAGAAATGCCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAGTGCTGATAGAAGTTTCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGGTAATAGAAATGCCAAAAACTGCAAAAGAGGCCGTGGAACGGTATGAGGAAATGTTCGAAGGCAAGATAATCATCTCCGAGCGATTTGGTGAGTTTTCTGGCACAAACGTCCGGATTTTTTCCTCTAATTTTCAGACATCCGATGCTTCTTGTTTGACAAAACCGAGCCGGGTGAAGAAAAAAATGGAAAATGGGTGCCGCGAAAAGTTTTGAAGGCGTGCCAGCTCAGAAACTTCTATCAGCACTT</canonical_amplicon>
		<polymorphic_amplicon>GAGGTAATAGAAATGCCAAAAACTGCAAAAGAGGCCGTGGAACGGTATGAGGAAATGTTCGAAGGCAAGATAATCATCTCCGAGCGATTTGGTGAGTTTTCTGGYACAAACGTCCGGATTTTTTCCTCTAATTTTCAGACATCCGATGCTTCTTGTTTGACAAAACCGAGCCGGGTGAAGAAAAAAATGGAAAATGGGTGCCGCGAAAAGTTTTGAAGGCGTGCCAGCTCAGAAACTTCTATCAGCACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26384</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>105662</contig_pos>
        <strand>+</strand>
        <context>TCTTGTTTGA[C/T]AAAACCGAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTCCGGATTTTTTCCTCTAATTTTCAGACATCCGATGCTTCTTGTTTGA</left_flank>
        <right_flank>AAAACCGAGCCGGGTGAAGAAAAAAATGGAAAATGGGTGCCGCGAAAAGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGCAGAAGCAGGATCTGGAGAGGGTGACAAATTTGTCGTGCAAAACGGGTCAAGAGAACACAGCGTTGAAATCTAGGAATGTATATTTGGTGATGAGAGTGAAAGTTCTTGAAGGAGGTGAGCTTGAATTTCTCTGGAAAGATGAAAAATTACGAATTCTAGAATTGGCTAAAAGTCATGGACGCCAATCGTCCGCAGCTCCTATTCCAGCCGTCGACCTATCTGACGGAACTACCAGCATCAAAAAAGAGATTGTAGAAGATCATGACGACATCCGACCAGACCATGAAGTCAGAGTGGTGGCTATGGTCAAGAGCAAGAAGAAGGCAATCAAAAGAGAGGTAATAGAAATGCCAAAAACTGCAAAAGAGGCCGTGGAACGGTATGAGGAAATGTTCGAAGGCAAGATAATCATCTCCGAGCGATTTGGTGAGTTTTCTGGCACAAACGTCCGGATTTTTTCCTCTAATTTTCAGACATCCGATGCTTCTTGTTTGACAAAACCGAGCCGGGTGAAGAAAAAAATGGAAAATGGGTGCCGCGAAAAGTTTTGAAGGCGTGCCAGCTCAGAAACTTCTATCAGCACTTCCGGCCGAAAAGAGAAAGTGAGTTTTATATTTCTGGGAAGTTTATATTTTAAAGATTTTCAGATCCAGAATGGAAAGAAGTGAAAAACGATGCGAAGGTTGAAGAGAGGTGGAGGAAGAGATGGATGGCGGTGAGGGAGGAGCAAATTGCTCAGTACCATGCTGGACTAATCTTCTTTAATGATGATTATAAGAATTTGAATTTGTAAATGAGATTTTTTCGATTGTATATGTCTATATAAGATATCTAAAGGGTTTTCTTTGTAGTTCGTCAGATTTTTCTCTTGTTCAGTTTCCCCGAATTCTCAAATATCATGCCTCTTTTTCCGCTTCTTCCCATTGATTCTTATGTATCTTCGATTTTTTGGATGCTTTGACATAAATGTTTCAAATTAACTTCAGAATACAGTAC</canonical>
            <polymorphic>GCGCAGAAGCAGGATCTGGAGAGGGTGACAAATTTGTCGTGCAAAACGGGTCAAGAGAACACAGCGTTGAAATCTAGGAATGTATATTTGGTGATGAGAGTGAAAGTTCTTGAAGGAGGTGAGCTTGAATTTCTCTGGAAAGATGAAAAATTACGAATTCTAGAATTGGCTAAAAGTCATGGACGCCAATCGTCCGCAGCTCCTATTCCAGCCGTCGACCTATCTGACGGAACTACCAGCATCAAAAAAGAGATTGTAGAAGATCATGACGACATCCGACCAGACCATGAAGTCAGAGTGGTGGCTATGGTCAAGAGCAAGAAGAAGGCAATCAAAAGAGAGGTAATAGAAATGCCAAAAACTGCAAAAGAGGCCGTGGAACGGTATGAGGAAATGTTCGAAGGCAAGATAATCATCTCCGAGCGATTTGGTGAGTTTTCTGGCACAAACGTCCGGATTTTTTCCTCTAATTTTCAGACATCCGATGCTTCTTGTTTGAYAAAACCGAGCCGGGTGAAGAAAAAAATGGAAAATGGGTGCCGCGAAAAGTTTTGAAGGCGTGCCAGCTCAGAAACTTCTATCAGCACTTCCGGCCGAAAAGAGAAAGTGAGTTTTATATTTCTGGGAAGTTTATATTTTAAAGATTTTCAGATCCAGAATGGAAAGAAGTGAAAAACGATGCGAAGGTTGAAGAGAGGTGGAGGAAGAGATGGATGGCGGTGAGGGAGGAGCAAATTGCTCAGTACCATGCTGGACTAATCTTCTTTAATGATGATTATAAGAATTTGAATTTGTAAATGAGATTTTTTCGATTGTATATGTCTATATAAGATATCTAAAGGGTTTTCTTTGTAGTTCGTCAGATTTTTCTCTTGTTCAGTTTCCCCGAATTCTCAAATATCATGCCTCTTTTTCCGCTTCTTCCCATTGATTCTTATGTATCTTCGATTTTTTGGATGCTTTGACATAAATGTTTCAAATTAACTTCAGAATACAGTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGTAATAGAAATGCCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAGTGCTGATAGAAGTTTCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGGTAATAGAAATGCCAAAAACTGCAAAAGAGGCCGTGGAACGGTATGAGGAAATGTTCGAAGGCAAGATAATCATCTCCGAGCGATTTGGTGAGTTTTCTGGCACAAACGTCCGGATTTTTTCCTCTAATTTTCAGACATCCGATGCTTCTTGTTTGACAAAACCGAGCCGGGTGAAGAAAAAAATGGAAAATGGGTGCCGCGAAAAGTTTTGAAGGCGTGCCAGCTCAGAAACTTCTATCAGCACTT</canonical_amplicon>
		<polymorphic_amplicon>GAGGTAATAGAAATGCCAAAAACTGCAAAAGAGGCCGTGGAACGGTATGAGGAAATGTTCGAAGGCAAGATAATCATCTCCGAGCGATTTGGTGAGTTTTCTGGCACAAACGTCCGGATTTTTTCCTCTAATTTTCAGACATCCGATGCTTCTTGTTTGAYAAAACCGAGCCGGGTGAAGAAAAAAATGGAAAATGGGTGCCGCGAAAAGTTTTGAAGGCGTGCCAGCTCAGAAACTTCTATCAGCACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26385</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>127631</contig_pos>
        <strand></strand>
        <context>ATCATTTTTC[T/A]GATTTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGAATTTGCCCAGGAGTTTTTGTTATTAAACTGTTCAAGAATCATTTTTC</left_flank>
        <right_flank>GATTTTTTTGAAAATCTCGGTCAAAAATTTGAATTTTGGTATTAAAAAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGACTACTGTACTTCTATACAAATCGAAAAAAAATATTTGTAGTATTTGTTTTCTTCTTGATCAGTTCCAAAACATGAGATATTGAATATTTGAAAAATGGAAATACCACTGATACGAGTACAATAAAATGGGGAATAAATGTATTTCAAAGAGATTTGGAACTTCATTTTCAGAGAGAAATGAATTCAAATATTTTGAAAATTTGGGGGATGAAAAATGAAATTTATCCGAATTCGGATGAAGATTTGGGGGGGGGGCTCTAGAAGGTTCTCGATTTTTTTTCAGAAAAAAAAATGTCGAAAATGAAAAATAGAGAATTTTCAGTTTGGTAAAGTATTATTCCCATATCCTTTCGAAAATGATTCACTGGTTTTCTGACATTTATAGAAGCAACTCTCACGGCTTAAAAAAGTATGAGAAAATATAAAATCTAGAAACTTTTGAGCTCTGAATTTGCCCAGGAGTTTTTGTTATTAAACTGTTCAAGAATCATTTTTCTGATTTTTTTGAAAATCTCGGTCAAAAATTTGAATTTTGGTATTAAAAAAAATTATTTGAAACGTTTGAATTCGTCTTTTTTGTCTGAATCCATTTATTCAGAAATCATAATAAACTACGAGATAACAGAAAGATATAGGAAACAGTAATATTTAGAAATTGACAATTTAGAAGTTGGTGGTTTAATCAATGACCGGTGTAACTACCGCACCTGTAATTGTGGCTGGTTTGAATACCTGAAATAATTCCCTTACTCAAACACTGATTCAAAATTTCCTACCGTAAATTCAAAACTATTTTTGAATCTCAATAATCCCAGTACCGTACTCCGATACTGTGTAGACATTGCCAAACAAATTGGAAAATGGGTCAATGTCGTGAAAGATGTGAGAAATTCCAAAACGTCTGGAGGAAGGAAAATTTCTCTGAAATTTTCTTCAATTTCTTGCTGAAAGTGTAAAGAAGGAGTTACAATTCAAGCGAACGTTCTGGAAAGGTTAC</canonical>
            <polymorphic>GGACTACTGTACTTCTATACAAATCGAAAAAAAATATTTGTAGTATTTGTTTTCTTCTTGATCAGTTCCAAAACATGAGATATTGAATATTTGAAAAATGGAAATACCACTGATACGAGTACAATAAAATGGGGAATAAATGTATTTCAAAGAGATTTGGAACTTCATTTTCAGAGAGAAATGAATTCAAATATTTTGAAAATTTGGGGGATGAAAAATGAAATTTATCCGAATTCGGATGAAGATTTGGGGGGGGGGCTCTAGAAGGTTCTCGATTTTTTTTCAGAAAAAAAAATGTCGAAAATGAAAAATAGAGAATTTTCAGTTTGGTAAAGTATTATTCCCATATCCTTTCGAAAATGATTCACTGGTTTTCTGACATTTATAGAAGCAACTCTCACGGCTTAAAAAAGTATGAGAAAATATAAAATCTAGAAACTTTTGAGCTCTGAATTTGCCCAGGAGTTTTTGTTATTAAACTGTTCAAGAATCATTTTTCWGATTTTTTTGAAAATCTCGGTCAAAAATTTGAATTTTGGTATTAAAAAAAATTATTTGAAACGTTTGAATTCGTCTTTTTTGTCTGAATCCATTTATTCAGAAATCATAATAAACTACGAGATAACAGAAAGATATAGGAAACAGTAATATTTAGAAATTGACAATTTAGAAGTTGGTGGTTTAATCAATGACCGGTGTAACTACCGCACCTGTAATTGTGGCTGGTTTGAATACCTGAAATAATTCCCTTACTCAAACACTGATTCAAAATTTCCTACCGTAAATTCAAAACTATTTTTGAATCTCAATAATCCCAGTACCGTACTCCGATACTGTGTAGACATTGCCAAACAAATTGGAAAATGGGTCAATGTCGTGAAAGATGTGAGAAATTCCAAAACGTCTGGAGGAAGGAAAATTTCTCTGAAATTTTCTTCAATTTCTTGCTGAAAGTGTAAAGAAGGAGTTACAATTCAAGCGAACGTTCTGGAAAGGTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATGATTCACTGGTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>GAATAAATGGATTCAGACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GAAAATGATTCACTGGTTTTCTGACATTTATAGAAGCAACTCTCACGGCTTAAAAAAGTATGAGAAAATATAAAATCTAGAAACTTTTGAGCTCTGAATTTGCCCAGGAGTTTTTGTTATTAAACTGTTCAAGAATCATTTTTCTGATTTTTTTGAAAATCTCGGTCAAAAATTTGAATTTTGGTATTAAAAAAAATTATTTGAAACGTTTGAATTCGTCTTTTTTGTCTGAATCCATTTATTC</canonical_amplicon>
		<polymorphic_amplicon>GAAAATGATTCACTGGTTTTCTGACATTTATAGAAGCAACTCTCACGGCTTAAAAAAGTATGAGAAAATATAAAATCTAGAAACTTTTGAGCTCTGAATTTGCCCAGGAGTTTTTGTTATTAAACTGTTCAAGAATCATTTTTCWGATTTTTTTGAAAATCTCGGTCAAAAATTTGAATTTTGGTATTAAAAAAAATTATTTGAAACGTTTGAATTCGTCTTTTTTGTCTGAATCCATTTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26386</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>127682</contig_pos>
        <strand></strand>
        <context>ATTAAAAAAA[A/T]TTATTTGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATTTTTTTGAAAATCTCGGTCAAAAATTTGAATTTTGGTATTAAAAAAA</left_flank>
        <right_flank>TTATTTGAAACGTTTGAATTCGTCTTTTTTGTCTGAATCCATTTATTCAG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTCTTGATCAGTTCCAAAACATGAGATATTGAATATTTGAAAAATGGAAATACCACTGATACGAGTACAATAAAATGGGGAATAAATGTATTTCAAAGAGATTTGGAACTTCATTTTCAGAGAGAAATGAATTCAAATATTTTGAAAATTTGGGGGATGAAAAATGAAATTTATCCGAATTCGGATGAAGATTTGGGGGGGGGGCTCTAGAAGGTTCTCGATTTTTTTTCAGAAAAAAAAATGTCGAAAATGAAAAATAGAGAATTTTCAGTTTGGTAAAGTATTATTCCCATATCCTTTCGAAAATGATTCACTGGTTTTCTGACATTTATAGAAGCAACTCTCACGGCTTAAAAAAGTATGAGAAAATATAAAATCTAGAAACTTTTGAGCTCTGAATTTGCCCAGGAGTTTTTGTTATTAAACTGTTCAAGAATCATTTTTCTGATTTTTTTGAAAATCTCGGTCAAAAATTTGAATTTTGGTATTAAAAAAAATTATTTGAAACGTTTGAATTCGTCTTTTTTGTCTGAATCCATTTATTCAGAAATCATAATAAACTACGAGATAACAGAAAGATATAGGAAACAGTAATATTTAGAAATTGACAATTTAGAAGTTGGTGGTTTAATCAATGACCGGTGTAACTACCGCACCTGTAATTGTGGCTGGTTTGAATACCTGAAATAATTCCCTTACTCAAACACTGATTCAAAATTTCCTACCGTAAATTCAAAACTATTTTTGAATCTCAATAATCCCAGTACCGTACTCCGATACTGTGTAGACATTGCCAAACAAATTGGAAAATGGGTCAATGTCGTGAAAGATGTGAGAAATTCCAAAACGTCTGGAGGAAGGAAAATTTCTCTGAAATTTTCTTCAATTTCTTGCTGAAAGTGTAAAGAAGGAGTTACAATTCAAGCGAACGTTCTGGAAAGGTTACGTAGCTAAGATGTAAGATTCCAGTGGGAAGTGAGGAAACAACATATAAAAT</canonical>
            <polymorphic>TTCTTCTTGATCAGTTCCAAAACATGAGATATTGAATATTTGAAAAATGGAAATACCACTGATACGAGTACAATAAAATGGGGAATAAATGTATTTCAAAGAGATTTGGAACTTCATTTTCAGAGAGAAATGAATTCAAATATTTTGAAAATTTGGGGGATGAAAAATGAAATTTATCCGAATTCGGATGAAGATTTGGGGGGGGGGCTCTAGAAGGTTCTCGATTTTTTTTCAGAAAAAAAAATGTCGAAAATGAAAAATAGAGAATTTTCAGTTTGGTAAAGTATTATTCCCATATCCTTTCGAAAATGATTCACTGGTTTTCTGACATTTATAGAAGCAACTCTCACGGCTTAAAAAAGTATGAGAAAATATAAAATCTAGAAACTTTTGAGCTCTGAATTTGCCCAGGAGTTTTTGTTATTAAACTGTTCAAGAATCATTTTTCTGATTTTTTTGAAAATCTCGGTCAAAAATTTGAATTTTGGTATTAAAAAAAWTTATTTGAAACGTTTGAATTCGTCTTTTTTGTCTGAATCCATTTATTCAGAAATCATAATAAACTACGAGATAACAGAAAGATATAGGAAACAGTAATATTTAGAAATTGACAATTTAGAAGTTGGTGGTTTAATCAATGACCGGTGTAACTACCGCACCTGTAATTGTGGCTGGTTTGAATACCTGAAATAATTCCCTTACTCAAACACTGATTCAAAATTTCCTACCGTAAATTCAAAACTATTTTTGAATCTCAATAATCCCAGTACCGTACTCCGATACTGTGTAGACATTGCCAAACAAATTGGAAAATGGGTCAATGTCGTGAAAGATGTGAGAAATTCCAAAACGTCTGGAGGAAGGAAAATTTCTCTGAAATTTTCTTCAATTTCTTGCTGAAAGTGTAAAGAAGGAGTTACAATTCAAGCGAACGTTCTGGAAAGGTTACGTAGCTAAGATGTAAGATTCCAGTGGGAAGTGAGGAAACAACATATAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>135 132 89 85 80 74 71 51 37 33 28 27 26 21 18 18 17 14 11 10 10 7 6</canonical_bands>
                <polymorphic_bands>135 132 89 85 80 74 71 51 37 36 33 28 27 26 21 17 14 11 10 10 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCTAGAAACTTTTGAGCTCTG</pcr_primer_p1>
		<pcr_primer_p2>CCACCAACTTCTAAATTGTCA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAATCTAGAAACTTTTGAGCTCTGAATTTGCCCAGGAGTTTTTGTTATTAAACTGTTCAAGAATCATTTTTCTGATTTTTTTGAAAATCTCGGTCAAAAATTTGAATTTTGGTATTAAAAAAAATTATTTGAAACGTTTGAATTCGTCTTTTTTGTCTGAATCCATTTATTCAGAAATCATAATAAACTACGAGATAACAGAAAGATATAGGAAACAGTAATATTTAGAAATTGACAATTTAGAAGTTGGTGG</canonical_amplicon>
		<polymorphic_amplicon>AAATCTAGAAACTTTTGAGCTCTGAATTTGCCCAGGAGTTTTTGTTATTAAACTGTTCAAGAATCATTTTTCTGATTTTTTTGAAAATCTCGGTCAAAAATTTGAATTTTGGTATTAAAAAAAWTTATTTGAAACGTTTGAATTCGTCTTTTTTGTCTGAATCCATTTATTCAGAAATCATAATAAACTACGAGATAACAGAAAGATATAGGAAACAGTAATATTTAGAAATTGACAATTTAGAAGTTGGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26387</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>127732</contig_pos>
        <strand></strand>
        <context>CATTTATTCA[G/A]AAATCATAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTATTTGAAACGTTTGAATTCGTCTTTTTTGTCTGAATCCATTTATTCA</left_flank>
        <right_flank>AAATCATAATAAACTACGAGATAACAGAAAGATATAGGAAACAGTAATAT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATACCACTGATACGAGTACAATAAAATGGGGAATAAATGTATTTCAAAGAGATTTGGAACTTCATTTTCAGAGAGAAATGAATTCAAATATTTTGAAAATTTGGGGGATGAAAAATGAAATTTATCCGAATTCGGATGAAGATTTGGGGGGGGGGCTCTAGAAGGTTCTCGATTTTTTTTCAGAAAAAAAAATGTCGAAAATGAAAAATAGAGAATTTTCAGTTTGGTAAAGTATTATTCCCATATCCTTTCGAAAATGATTCACTGGTTTTCTGACATTTATAGAAGCAACTCTCACGGCTTAAAAAAGTATGAGAAAATATAAAATCTAGAAACTTTTGAGCTCTGAATTTGCCCAGGAGTTTTTGTTATTAAACTGTTCAAGAATCATTTTTCTGATTTTTTTGAAAATCTCGGTCAAAAATTTGAATTTTGGTATTAAAAAAAATTATTTGAAACGTTTGAATTCGTCTTTTTTGTCTGAATCCATTTATTCAGAAATCATAATAAACTACGAGATAACAGAAAGATATAGGAAACAGTAATATTTAGAAATTGACAATTTAGAAGTTGGTGGTTTAATCAATGACCGGTGTAACTACCGCACCTGTAATTGTGGCTGGTTTGAATACCTGAAATAATTCCCTTACTCAAACACTGATTCAAAATTTCCTACCGTAAATTCAAAACTATTTTTGAATCTCAATAATCCCAGTACCGTACTCCGATACTGTGTAGACATTGCCAAACAAATTGGAAAATGGGTCAATGTCGTGAAAGATGTGAGAAATTCCAAAACGTCTGGAGGAAGGAAAATTTCTCTGAAATTTTCTTCAATTTCTTGCTGAAAGTGTAAAGAAGGAGTTACAATTCAAGCGAACGTTCTGGAAAGGTTACGTAGCTAAGATGTAAGATTCCAGTGGGAAGTGAGGAAACAACATATAAAATTGTGTTAAAAATTATCAATTTAGTGGTTGCGGAGTTTCTGAAATTCGGAA</canonical>
            <polymorphic>AAATACCACTGATACGAGTACAATAAAATGGGGAATAAATGTATTTCAAAGAGATTTGGAACTTCATTTTCAGAGAGAAATGAATTCAAATATTTTGAAAATTTGGGGGATGAAAAATGAAATTTATCCGAATTCGGATGAAGATTTGGGGGGGGGGCTCTAGAAGGTTCTCGATTTTTTTTCAGAAAAAAAAATGTCGAAAATGAAAAATAGAGAATTTTCAGTTTGGTAAAGTATTATTCCCATATCCTTTCGAAAATGATTCACTGGTTTTCTGACATTTATAGAAGCAACTCTCACGGCTTAAAAAAGTATGAGAAAATATAAAATCTAGAAACTTTTGAGCTCTGAATTTGCCCAGGAGTTTTTGTTATTAAACTGTTCAAGAATCATTTTTCTGATTTTTTTGAAAATCTCGGTCAAAAATTTGAATTTTGGTATTAAAAAAAATTATTTGAAACGTTTGAATTCGTCTTTTTTGTCTGAATCCATTTATTCARAAATCATAATAAACTACGAGATAACAGAAAGATATAGGAAACAGTAATATTTAGAAATTGACAATTTAGAAGTTGGTGGTTTAATCAATGACCGGTGTAACTACCGCACCTGTAATTGTGGCTGGTTTGAATACCTGAAATAATTCCCTTACTCAAACACTGATTCAAAATTTCCTACCGTAAATTCAAAACTATTTTTGAATCTCAATAATCCCAGTACCGTACTCCGATACTGTGTAGACATTGCCAAACAAATTGGAAAATGGGTCAATGTCGTGAAAGATGTGAGAAATTCCAAAACGTCTGGAGGAAGGAAAATTTCTCTGAAATTTTCTTCAATTTCTTGCTGAAAGTGTAAAGAAGGAGTTACAATTCAAGCGAACGTTCTGGAAAGGTTACGTAGCTAAGATGTAAGATTCCAGTGGGAAGTGAGGAAACAACATATAAAATTGTGTTAAAAATTATCAATTTAGTGGTTGCGGAGTTTCTGAAATTCGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>229 164 97 92 85 73 72 57 50 48 15 8 7 3</canonical_bands>
                <polymorphic_bands>244 164 97 92 85 73 72 57 50 48 8 7 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCTAGAAACTTTTGAGCTCTG</pcr_primer_p1>
		<pcr_primer_p2>CCACCAACTTCTAAATTGTCA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAATCTAGAAACTTTTGAGCTCTGAATTTGCCCAGGAGTTTTTGTTATTAAACTGTTCAAGAATCATTTTTCTGATTTTTTTGAAAATCTCGGTCAAAAATTTGAATTTTGGTATTAAAAAAAATTATTTGAAACGTTTGAATTCGTCTTTTTTGTCTGAATCCATTTATTCAGAAATCATAATAAACTACGAGATAACAGAAAGATATAGGAAACAGTAATATTTAGAAATTGACAATTTAGAAGTTGGTGG</canonical_amplicon>
		<polymorphic_amplicon>AAATCTAGAAACTTTTGAGCTCTGAATTTGCCCAGGAGTTTTTGTTATTAAACTGTTCAAGAATCATTTTTCTGATTTTTTTGAAAATCTCGGTCAAAAATTTGAATTTTGGTATTAAAAAAAATTATTTGAAACGTTTGAATTCGTCTTTTTTGTCTGAATCCATTTATTCARAAATCATAATAAACTACGAGATAACAGAAAGATATAGGAAACAGTAATATTTAGAAATTGACAATTTAGAAGTTGGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26388</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>127822</contig_pos>
        <strand></strand>
        <context>TTTAATCAAT[G/T]ACCGGTGTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACAGTAATATTTAGAAATTGACAATTTAGAAGTTGGTGGTTTAATCAAT</left_flank>
        <right_flank>ACCGGTGTAACTACCGCACCTGTAATTGTGGCTGGTTTGAATACCTGAAA</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTTGAAAATTTGGGGGATGAAAAATGAAATTTATCCGAATTCGGATGAAGATTTGGGGGGGGGGCTCTAGAAGGTTCTCGATTTTTTTTCAGAAAAAAAAATGTCGAAAATGAAAAATAGAGAATTTTCAGTTTGGTAAAGTATTATTCCCATATCCTTTCGAAAATGATTCACTGGTTTTCTGACATTTATAGAAGCAACTCTCACGGCTTAAAAAAGTATGAGAAAATATAAAATCTAGAAACTTTTGAGCTCTGAATTTGCCCAGGAGTTTTTGTTATTAAACTGTTCAAGAATCATTTTTCTGATTTTTTTGAAAATCTCGGTCAAAAATTTGAATTTTGGTATTAAAAAAAATTATTTGAAACGTTTGAATTCGTCTTTTTTGTCTGAATCCATTTATTCAGAAATCATAATAAACTACGAGATAACAGAAAGATATAGGAAACAGTAATATTTAGAAATTGACAATTTAGAAGTTGGTGGTTTAATCAATGACCGGTGTAACTACCGCACCTGTAATTGTGGCTGGTTTGAATACCTGAAATAATTCCCTTACTCAAACACTGATTCAAAATTTCCTACCGTAAATTCAAAACTATTTTTGAATCTCAATAATCCCAGTACCGTACTCCGATACTGTGTAGACATTGCCAAACAAATTGGAAAATGGGTCAATGTCGTGAAAGATGTGAGAAATTCCAAAACGTCTGGAGGAAGGAAAATTTCTCTGAAATTTTCTTCAATTTCTTGCTGAAAGTGTAAAGAAGGAGTTACAATTCAAGCGAACGTTCTGGAAAGGTTACGTAGCTAAGATGTAAGATTCCAGTGGGAAGTGAGGAAACAACATATAAAATTGTGTTAAAAATTATCAATTTAGTGGTTGCGGAGTTTCTGAAATTCGGAAGCGAAATCGAAAATGCGAAATTGTGAAACTACTTTTTTTGGTTTGAAGCTGAAAAAATACCGGTTCGGGATTCCTCGATTTTTTGAAACT</canonical>
            <polymorphic>TATTTTGAAAATTTGGGGGATGAAAAATGAAATTTATCCGAATTCGGATGAAGATTTGGGGGGGGGGCTCTAGAAGGTTCTCGATTTTTTTTCAGAAAAAAAAATGTCGAAAATGAAAAATAGAGAATTTTCAGTTTGGTAAAGTATTATTCCCATATCCTTTCGAAAATGATTCACTGGTTTTCTGACATTTATAGAAGCAACTCTCACGGCTTAAAAAAGTATGAGAAAATATAAAATCTAGAAACTTTTGAGCTCTGAATTTGCCCAGGAGTTTTTGTTATTAAACTGTTCAAGAATCATTTTTCTGATTTTTTTGAAAATCTCGGTCAAAAATTTGAATTTTGGTATTAAAAAAAATTATTTGAAACGTTTGAATTCGTCTTTTTTGTCTGAATCCATTTATTCAGAAATCATAATAAACTACGAGATAACAGAAAGATATAGGAAACAGTAATATTTAGAAATTGACAATTTAGAAGTTGGTGGTTTAATCAATKACCGGTGTAACTACCGCACCTGTAATTGTGGCTGGTTTGAATACCTGAAATAATTCCCTTACTCAAACACTGATTCAAAATTTCCTACCGTAAATTCAAAACTATTTTTGAATCTCAATAATCCCAGTACCGTACTCCGATACTGTGTAGACATTGCCAAACAAATTGGAAAATGGGTCAATGTCGTGAAAGATGTGAGAAATTCCAAAACGTCTGGAGGAAGGAAAATTTCTCTGAAATTTTCTTCAATTTCTTGCTGAAAGTGTAAAGAAGGAGTTACAATTCAAGCGAACGTTCTGGAAAGGTTACGTAGCTAAGATGTAAGATTCCAGTGGGAAGTGAGGAAACAACATATAAAATTGTGTTAAAAATTATCAATTTAGTGGTTGCGGAGTTTCTGAAATTCGGAAGCGAAATCGAAAATGCGAAATTGTGAAACTACTTTTTTTGGTTTGAAGCTGAAAAAATACCGGTTCGGGATTCCTCGATTTTTTGAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACGTTTGAATTCGTCTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATAGTTTTGAATTTACGGTAGG</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GAAACGTTTGAATTCGTCTTTTTTGTCTGAATCCATTTATTCAGAAATCATAATAAACTACGAGATAACAGAAAGATATAGGAAACAGTAATATTTAGAAATTGACAATTTAGAAGTTGGTGGTTTAATCAATGACCGGTGTAACTACCGCACCTGTAATTGTGGCTGGTTTGAATACCTGAAATAATTCCCTTACTCAAACACTGATTCAAAATTTCCTACCGTAAATTCAAAACTATTT</canonical_amplicon>
		<polymorphic_amplicon>GAAACGTTTGAATTCGTCTTTTTTGTCTGAATCCATTTATTCAGAAATCATAATAAACTACGAGATAACAGAAAGATATAGGAAACAGTAATATTTAGAAATTGACAATTTAGAAGTTGGTGGTTTAATCAATKACCGGTGTAACTACCGCACCTGTAATTGTGGCTGGTTTGAATACCTGAAATAATTCCCTTACTCAAACACTGATTCAAAATTTCCTACCGTAAATTCAAAACTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26389</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>127862</contig_pos>
        <strand></strand>
        <context>GGCTGGTTTG[A/G]ATACCTGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTAATCAATGACCGGTGTAACTACCGCACCTGTAATTGTGGCTGGTTTG</left_flank>
        <right_flank>ATACCTGAAATAATTCCCTTACTCAAACACTGATTCAAAATTTCCTACCG</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCGGATGAAGATTTGGGGGGGGGGCTCTAGAAGGTTCTCGATTTTTTTTCAGAAAAAAAAATGTCGAAAATGAAAAATAGAGAATTTTCAGTTTGGTAAAGTATTATTCCCATATCCTTTCGAAAATGATTCACTGGTTTTCTGACATTTATAGAAGCAACTCTCACGGCTTAAAAAAGTATGAGAAAATATAAAATCTAGAAACTTTTGAGCTCTGAATTTGCCCAGGAGTTTTTGTTATTAAACTGTTCAAGAATCATTTTTCTGATTTTTTTGAAAATCTCGGTCAAAAATTTGAATTTTGGTATTAAAAAAAATTATTTGAAACGTTTGAATTCGTCTTTTTTGTCTGAATCCATTTATTCAGAAATCATAATAAACTACGAGATAACAGAAAGATATAGGAAACAGTAATATTTAGAAATTGACAATTTAGAAGTTGGTGGTTTAATCAATGACCGGTGTAACTACCGCACCTGTAATTGTGGCTGGTTTGAATACCTGAAATAATTCCCTTACTCAAACACTGATTCAAAATTTCCTACCGTAAATTCAAAACTATTTTTGAATCTCAATAATCCCAGTACCGTACTCCGATACTGTGTAGACATTGCCAAACAAATTGGAAAATGGGTCAATGTCGTGAAAGATGTGAGAAATTCCAAAACGTCTGGAGGAAGGAAAATTTCTCTGAAATTTTCTTCAATTTCTTGCTGAAAGTGTAAAGAAGGAGTTACAATTCAAGCGAACGTTCTGGAAAGGTTACGTAGCTAAGATGTAAGATTCCAGTGGGAAGTGAGGAAACAACATATAAAATTGTGTTAAAAATTATCAATTTAGTGGTTGCGGAGTTTCTGAAATTCGGAAGCGAAATCGAAAATGCGAAATTGTGAAACTACTTTTTTTGGTTTGAAGCTGAAAAAATACCGGTTCGGGATTCCTCGATTTTTTGAAACTGGAAAATAAGTAGGAGGGTGAGAATAGGGAATAGTGCAGC</canonical>
            <polymorphic>AATTCGGATGAAGATTTGGGGGGGGGGCTCTAGAAGGTTCTCGATTTTTTTTCAGAAAAAAAAATGTCGAAAATGAAAAATAGAGAATTTTCAGTTTGGTAAAGTATTATTCCCATATCCTTTCGAAAATGATTCACTGGTTTTCTGACATTTATAGAAGCAACTCTCACGGCTTAAAAAAGTATGAGAAAATATAAAATCTAGAAACTTTTGAGCTCTGAATTTGCCCAGGAGTTTTTGTTATTAAACTGTTCAAGAATCATTTTTCTGATTTTTTTGAAAATCTCGGTCAAAAATTTGAATTTTGGTATTAAAAAAAATTATTTGAAACGTTTGAATTCGTCTTTTTTGTCTGAATCCATTTATTCAGAAATCATAATAAACTACGAGATAACAGAAAGATATAGGAAACAGTAATATTTAGAAATTGACAATTTAGAAGTTGGTGGTTTAATCAATGACCGGTGTAACTACCGCACCTGTAATTGTGGCTGGTTTGRATACCTGAAATAATTCCCTTACTCAAACACTGATTCAAAATTTCCTACCGTAAATTCAAAACTATTTTTGAATCTCAATAATCCCAGTACCGTACTCCGATACTGTGTAGACATTGCCAAACAAATTGGAAAATGGGTCAATGTCGTGAAAGATGTGAGAAATTCCAAAACGTCTGGAGGAAGGAAAATTTCTCTGAAATTTTCTTCAATTTCTTGCTGAAAGTGTAAAGAAGGAGTTACAATTCAAGCGAACGTTCTGGAAAGGTTACGTAGCTAAGATGTAAGATTCCAGTGGGAAGTGAGGAAACAACATATAAAATTGTGTTAAAAATTATCAATTTAGTGGTTGCGGAGTTTCTGAAATTCGGAAGCGAAATCGAAAATGCGAAATTGTGAAACTACTTTTTTTGGTTTGAAGCTGAAAAAATACCGGTTCGGGATTCCTCGATTTTTTGAAACTGGAAAATAAGTAGGAGGGTGAGAATAGGGAATAGTGCAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAATTTAGAAGTTGGTGGTTTA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTGGAATTTCTCACATCTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ACAATTTAGAAGTTGGTGGTTTAATCAATGACCGGTGTAACTACCGCACCTGTAATTGTGGCTGGTTTGAATACCTGAAATAATTCCCTTACTCAAACACTGATTCAAAATTTCCTACCGTAAATTCAAAACTATTTTTGAATCTCAATAATCCCAGTACCGTACTCCGATACTGTGTAGACATTGCCAAACAAATTGGAAAATGGGTCAATGTCGTGAAAGATGTGAGAAATTCCAAAAC</canonical_amplicon>
		<polymorphic_amplicon>ACAATTTAGAAGTTGGTGGTTTAATCAATGACCGGTGTAACTACCGCACCTGTAATTGTGGCTGGTTTGRATACCTGAAATAATTCCCTTACTCAAACACTGATTCAAAATTTCCTACCGTAAATTCAAAACTATTTTTGAATCTCAATAATCCCAGTACCGTACTCCGATACTGTGTAGACATTGCCAAACAAATTGGAAAATGGGTCAATGTCGTGAAAGATGTGAGAAATTCCAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26390</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>127876</contig_pos>
        <strand></strand>
        <context>CCTGAAATAA[T/C]TCCCTTACTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGTGTAACTACCGCACCTGTAATTGTGGCTGGTTTGAATACCTGAAATAA</left_flank>
        <right_flank>TCCCTTACTCAAACACTGATTCAAAATTTCCTACCGTAAATTCAAAACTA</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGGGGGGGGGGCTCTAGAAGGTTCTCGATTTTTTTTCAGAAAAAAAAATGTCGAAAATGAAAAATAGAGAATTTTCAGTTTGGTAAAGTATTATTCCCATATCCTTTCGAAAATGATTCACTGGTTTTCTGACATTTATAGAAGCAACTCTCACGGCTTAAAAAAGTATGAGAAAATATAAAATCTAGAAACTTTTGAGCTCTGAATTTGCCCAGGAGTTTTTGTTATTAAACTGTTCAAGAATCATTTTTCTGATTTTTTTGAAAATCTCGGTCAAAAATTTGAATTTTGGTATTAAAAAAAATTATTTGAAACGTTTGAATTCGTCTTTTTTGTCTGAATCCATTTATTCAGAAATCATAATAAACTACGAGATAACAGAAAGATATAGGAAACAGTAATATTTAGAAATTGACAATTTAGAAGTTGGTGGTTTAATCAATGACCGGTGTAACTACCGCACCTGTAATTGTGGCTGGTTTGAATACCTGAAATAATTCCCTTACTCAAACACTGATTCAAAATTTCCTACCGTAAATTCAAAACTATTTTTGAATCTCAATAATCCCAGTACCGTACTCCGATACTGTGTAGACATTGCCAAACAAATTGGAAAATGGGTCAATGTCGTGAAAGATGTGAGAAATTCCAAAACGTCTGGAGGAAGGAAAATTTCTCTGAAATTTTCTTCAATTTCTTGCTGAAAGTGTAAAGAAGGAGTTACAATTCAAGCGAACGTTCTGGAAAGGTTACGTAGCTAAGATGTAAGATTCCAGTGGGAAGTGAGGAAACAACATATAAAATTGTGTTAAAAATTATCAATTTAGTGGTTGCGGAGTTTCTGAAATTCGGAAGCGAAATCGAAAATGCGAAATTGTGAAACTACTTTTTTTGGTTTGAAGCTGAAAAAATACCGGTTCGGGATTCCTCGATTTTTTGAAACTGGAAAATAAGTAGGAGGGTGAGAATAGGGAATAGTGCAGCTGGGATGATCTGAA</canonical>
            <polymorphic>TTTGGGGGGGGGGCTCTAGAAGGTTCTCGATTTTTTTTCAGAAAAAAAAATGTCGAAAATGAAAAATAGAGAATTTTCAGTTTGGTAAAGTATTATTCCCATATCCTTTCGAAAATGATTCACTGGTTTTCTGACATTTATAGAAGCAACTCTCACGGCTTAAAAAAGTATGAGAAAATATAAAATCTAGAAACTTTTGAGCTCTGAATTTGCCCAGGAGTTTTTGTTATTAAACTGTTCAAGAATCATTTTTCTGATTTTTTTGAAAATCTCGGTCAAAAATTTGAATTTTGGTATTAAAAAAAATTATTTGAAACGTTTGAATTCGTCTTTTTTGTCTGAATCCATTTATTCAGAAATCATAATAAACTACGAGATAACAGAAAGATATAGGAAACAGTAATATTTAGAAATTGACAATTTAGAAGTTGGTGGTTTAATCAATGACCGGTGTAACTACCGCACCTGTAATTGTGGCTGGTTTGAATACCTGAAATAAYTCCCTTACTCAAACACTGATTCAAAATTTCCTACCGTAAATTCAAAACTATTTTTGAATCTCAATAATCCCAGTACCGTACTCCGATACTGTGTAGACATTGCCAAACAAATTGGAAAATGGGTCAATGTCGTGAAAGATGTGAGAAATTCCAAAACGTCTGGAGGAAGGAAAATTTCTCTGAAATTTTCTTCAATTTCTTGCTGAAAGTGTAAAGAAGGAGTTACAATTCAAGCGAACGTTCTGGAAAGGTTACGTAGCTAAGATGTAAGATTCCAGTGGGAAGTGAGGAAACAACATATAAAATTGTGTTAAAAATTATCAATTTAGTGGTTGCGGAGTTTCTGAAATTCGGAAGCGAAATCGAAAATGCGAAATTGTGAAACTACTTTTTTTGGTTTGAAGCTGAAAAAATACCGGTTCGGGATTCCTCGATTTTTTGAAACTGGAAAATAAGTAGGAGGGTGAGAATAGGGAATAGTGCAGCTGGGATGATCTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>135 126 89 77 74 71 71 51 37 33 28 27 27 26 25 18 18 14 12 11 10 7 7 6</canonical_bands>
                <polymorphic_bands>135 126 89 77 74 71 71 55 51 37 33 27 26 25 18 18 14 12 11 10 7 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAATTTAGAAGTTGGTGGTTTA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTGGAATTTCTCACATCTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ACAATTTAGAAGTTGGTGGTTTAATCAATGACCGGTGTAACTACCGCACCTGTAATTGTGGCTGGTTTGAATACCTGAAATAATTCCCTTACTCAAACACTGATTCAAAATTTCCTACCGTAAATTCAAAACTATTTTTGAATCTCAATAATCCCAGTACCGTACTCCGATACTGTGTAGACATTGCCAAACAAATTGGAAAATGGGTCAATGTCGTGAAAGATGTGAGAAATTCCAAAAC</canonical_amplicon>
		<polymorphic_amplicon>ACAATTTAGAAGTTGGTGGTTTAATCAATGACCGGTGTAACTACCGCACCTGTAATTGTGGCTGGTTTGAATACCTGAAATAAYTCCCTTACTCAAACACTGATTCAAAATTTCCTACCGTAAATTCAAAACTATTTTTGAATCTCAATAATCCCAGTACCGTACTCCGATACTGTGTAGACATTGCCAAACAAATTGGAAAATGGGTCAATGTCGTGAAAGATGTGAGAAATTCCAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26391</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>144608</contig_pos>
        <strand>+</strand>
        <context>TGAAAATAAG[A/G]AAGATTTTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAGTTCAGGAACTACGGTAGGAAATTATGAATGGAAGGTTGAAAATAAG</left_flank>
        <right_flank>AAGATTTTAGGTATTGAAACCAAACACAATCATTGGAAATGCAATTTGAA</right_flank>
        <qual_score>149</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTAGTGATATCTTTATTTTTGACAACATTTTAGTGATAATTTTTCAATTATCGTCACTAAATCATGTGAATTTCTTCGCACTATGTATTCCTCATTGACTTAAAGGTGGGGGGACATGAAAAAAATAATTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAAGGCGATGATTGAGTGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAAAAAGCGCACGCCCGTTTGCATACATAAAGGCAAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGATAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAACCCATTTTCCAATTTGTTTGGCAATGTCTTCACAGTATCGTAGTACGGTATTGGGATTTTTCAAATCTAAGGATAGTTCAGGAACTACGGTAGGAAATTATGAATGGAAGGTTGAAAATAAGGAAGATTTTAGGTATTGAAACCAAACACAATCATTGGAAATGCAATTTGAACGACAATGAAGTTGATAATGTGACTAAATTTCTTTGCTGTTTTACTTTTCAGTTCTACAATGACCTAACTTTTATTCCGCTGAATGAATTCTCAAACTTAAATCCTCGGAATGAAAGACAATACGAAGAAATGTACCCGACTAGACCATTATTTGTCCCTCCATGGATTTTTTTTCCGGATAATTTCGAGGCCTGAGAATCTGAAAAAAATACAGAGTGCTCATTTTCTGAATAATGAGAAACTAAAAGGGCACATCAAGATGAACAGAAGGTTTTCTATTGTAAGTATTCAACAGATGGAGCCTGATAAAAATTTATAGGAATCCAATTGAAAAATTGTGAAAAATAATCGAAGTACACTTACCGTAAACACCCTAATAGAACGCGAACCGGACTTTGAGCATATATATCTCGGTTCTTTCGAAAGATATCAAAAAAGTTGCCAACTAT</canonical>
            <polymorphic>TTCTTAGTGATATCTTTATTTTTGACAACATTTTAGTGATAATTTTTCAATTATCGTCACTAAATCATGTGAATTTCTTCGCACTATGTATTCCTCATTGACTTAAAGGTGGGGGGACATGAAAAAAATAATTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAAGGCGATGATTGAGTGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAAAAAGCGCACGCCCGTTTGCATACATAAAGGCAAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGATAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAACCCATTTTCCAATTTGTTTGGCAATGTCTTCACAGTATCGTAGTACGGTATTGGGATTTTTCAAATCTAAGGATAGTTCAGGAACTACGGTAGGAAATTATGAATGGAAGGTTGAAAATAAGRAAGATTTTAGGTATTGAAACCAAACACAATCATTGGAAATGCAATTTGAACGACAATGAAGTTGATAATGTGACTAAATTTCTTTGCTGTTTTACTTTTCAGTTCTACAATGACCTAACTTTTATTCCGCTGAATGAATTCTCAAACTTAAATCCTCGGAATGAAAGACAATACGAAGAAATGTACCCGACTAGACCATTATTTGTCCCTCCATGGATTTTTTTTCCGGATAATTTCGAGGCCTGAGAATCTGAAAAAAATACAGAGTGCTCATTTTCTGAATAATGAGAAACTAAAAGGGCACATCAAGATGAACAGAAGGTTTTCTATTGTAAGTATTCAACAGATGGAGCCTGATAAAAATTTATAGGAATCCAATTGAAAAATTGTGAAAAATAATCGAAGTACACTTACCGTAAACACCCTAATAGAACGCGAACCGGACTTTGAGCATATATATCTCGGTTCTTTCGAAAGATATCAAAAAAGTTGCCAACTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTACGAAAAATCTCCTGT</pcr_primer_p1>
		<pcr_primer_p2>CAGCAAAGAAATTTAGTCACATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAACCCATTTTCCAATTTGTTTGGCAATGTCTTCACAGTATCGTAGTACGGTATTGGGATTTTTCAAATCTAAGGATAGTTCAGGAACTACGGTAGGAAATTATGAATGGAAGGTTGAAAATAAGGAAGATTTTAGGTATTGAAACCAAACACAATCATTGGAAATGCAATTTGAACGACAATGAAGTTGATAATGTGACTAAATTTCTTTGCTG</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAACCCATTTTCCAATTTGTTTGGCAATGTCTTCACAGTATCGTAGTACGGTATTGGGATTTTTCAAATCTAAGGATAGTTCAGGAACTACGGTAGGAAATTATGAATGGAAGGTTGAAAATAAGRAAGATTTTAGGTATTGAAACCAAACACAATCATTGGAAATGCAATTTGAACGACAATGAAGTTGATAATGTGACTAAATTTCTTTGCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26392</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>144629</contig_pos>
        <strand>+</strand>
        <context>GTATTGAAAC[A/C]AAWCACWATC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAATTATGAATGGAAGGTTGAAAATAAGGAAGATTTTAGGTATTGAAAC</left_flank>
        <right_flank>AAACACAATCATTGGAAATGCAATTTGAACGACAATGAAGTTGATAATGT</right_flank>
        <qual_score>146</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGACAACATTTTAGTGATAATTTTTCAATTATCGTCACTAAATCATGTGAATTTCTTCGCACTATGTATTCCTCATTGACTTAAAGGTGGGGGGACATGAAAAAAATAATTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAAGGCGATGATTGAGTGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAAAAAGCGCACGCCCGTTTGCATACATAAAGGCAAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGATAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAACCCATTTTCCAATTTGTTTGGCAATGTCTTCACAGTATCGTAGTACGGTATTGGGATTTTTCAAATCTAAGGATAGTTCAGGAACTACGGTAGGAAATTATGAATGGAAGGTTGAAAATAAGGAAGATTTTAGGTATTGAAACCAAACACAATCATTGGAAATGCAATTTGAACGACAATGAAGTTGATAATGTGACTAAATTTCTTTGCTGTTTTACTTTTCAGTTCTACAATGACCTAACTTTTATTCCGCTGAATGAATTCTCAAACTTAAATCCTCGGAATGAAAGACAATACGAAGAAATGTACCCGACTAGACCATTATTTGTCCCTCCATGGATTTTTTTTCCGGATAATTTCGAGGCCTGAGAATCTGAAAAAAATACAGAGTGCTCATTTTCTGAATAATGAGAAACTAAAAGGGCACATCAAGATGAACAGAAGGTTTTCTATTGTAAGTATTCAACAGATGGAGCCTGATAAAAATTTATAGGAATCCAATTGAAAAATTGTGAAAAATAATCGAAGTACACTTACCGTAAACACCCTAATAGAACGCGAACCGGACTTTGAGCATATATATCTCGGTTCTTTCGAAAGATATCAAAAAAGTTGCCAACTATTAAAATGTATATCATGATATC</canonical>
            <polymorphic>TTGACAACATTTTAGTGATAATTTTTCAATTATCGTCACTAAATCATGTGAATTTCTTCGCACTATGTATTCCTCATTGACTTAAAGGTGGGGGGACATGAAAAAAATAATTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAAGGCGATGATTGAGTGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAAAAAGCGCACGCCCGTTTGCATACATAAAGGCAAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGATAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAACCCATTTTCCAATTTGTTTGGCAATGTCTTCACAGTATCGTAGTACGGTATTGGGATTTTTCAAATCTAAGGATAGTTCAGGAACTACGGTAGGAAATTATGAATGGAAGGTTGAAAATAAGGAAGATTTTAGGTATTGAAACMAAACACAATCATTGGAAATGCAATTTGAACGACAATGAAGTTGATAATGTGACTAAATTTCTTTGCTGTTTTACTTTTCAGTTCTACAATGACCTAACTTTTATTCCGCTGAATGAATTCTCAAACTTAAATCCTCGGAATGAAAGACAATACGAAGAAATGTACCCGACTAGACCATTATTTGTCCCTCCATGGATTTTTTTTCCGGATAATTTCGAGGCCTGAGAATCTGAAAAAAATACAGAGTGCTCATTTTCTGAATAATGAGAAACTAAAAGGGCACATCAAGATGAACAGAAGGTTTTCTATTGTAAGTATTCAACAGATGGAGCCTGATAAAAATTTATAGGAATCCAATTGAAAAATTGTGAAAAATAATCGAAGTACACTTACCGTAAACACCCTAATAGAACGCGAACCGGACTTTGAGCATATATATCTCGGTTCTTTCGAAAGATATCAAAAAAGTTGCCAACTATTAAAATGTATATCATGATATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTACGAAAAATCTCCTGT</pcr_primer_p1>
		<pcr_primer_p2>CAGCAAAGAAATTTAGTCACATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAACCCATTTTCCAATTTGTTTGGCAATGTCTTCACAGTATCGTAGTACGGTATTGGGATTTTTCAAATCTAAGGATAGTTCAGGAACTACGGTAGGAAATTATGAATGGAAGGTTGAAAATAAGGAAGATTTTAGGTATTGAAACCAAACACAATCATTGGAAATGCAATTTGAACGACAATGAAGTTGATAATGTGACTAAATTTCTTTGCTG</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAACCCATTTTCCAATTTGTTTGGCAATGTCTTCACAGTATCGTAGTACGGTATTGGGATTTTTCAAATCTAAGGATAGTTCAGGAACTACGGTAGGAAATTATGAATGGAAGGTTGAAAATAAGGAAGATTTTAGGTATTGAAACMAAACACAATCATTGGAAATGCAATTTGAACGACAATGAAGTTGATAATGTGACTAAATTTCTTTGCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26393</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>144632</contig_pos>
        <strand>+</strand>
        <context>TTGAAACMAA[A/T]CACWATCATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTATGAATGGAAGGTTGAAAATAAGGAAGATTTTAGGTATTGAAACCAA</left_flank>
        <right_flank>CACAATCATTGGAAATGCAATTTGAACGACAATGAAGTTGATAATGTGAC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAACATTTTAGTGATAATTTTTCAATTATCGTCACTAAATCATGTGAATTTCTTCGCACTATGTATTCCTCATTGACTTAAAGGTGGGGGGACATGAAAAAAATAATTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAAGGCGATGATTGAGTGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAAAAAGCGCACGCCCGTTTGCATACATAAAGGCAAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGATAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAACCCATTTTCCAATTTGTTTGGCAATGTCTTCACAGTATCGTAGTACGGTATTGGGATTTTTCAAATCTAAGGATAGTTCAGGAACTACGGTAGGAAATTATGAATGGAAGGTTGAAAATAAGGAAGATTTTAGGTATTGAAACCAAACACAATCATTGGAAATGCAATTTGAACGACAATGAAGTTGATAATGTGACTAAATTTCTTTGCTGTTTTACTTTTCAGTTCTACAATGACCTAACTTTTATTCCGCTGAATGAATTCTCAAACTTAAATCCTCGGAATGAAAGACAATACGAAGAAATGTACCCGACTAGACCATTATTTGTCCCTCCATGGATTTTTTTTCCGGATAATTTCGAGGCCTGAGAATCTGAAAAAAATACAGAGTGCTCATTTTCTGAATAATGAGAAACTAAAAGGGCACATCAAGATGAACAGAAGGTTTTCTATTGTAAGTATTCAACAGATGGAGCCTGATAAAAATTTATAGGAATCCAATTGAAAAATTGTGAAAAATAATCGAAGTACACTTACCGTAAACACCCTAATAGAACGCGAACCGGACTTTGAGCATATATATCTCGGTTCTTTCGAAAGATATCAAAAAAGTTGCCAACTATTAAAATGTATATCATGATATCAGC</canonical>
            <polymorphic>ACAACATTTTAGTGATAATTTTTCAATTATCGTCACTAAATCATGTGAATTTCTTCGCACTATGTATTCCTCATTGACTTAAAGGTGGGGGGACATGAAAAAAATAATTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAAGGCGATGATTGAGTGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAAAAAGCGCACGCCCGTTTGCATACATAAAGGCAAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGATAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAACCCATTTTCCAATTTGTTTGGCAATGTCTTCACAGTATCGTAGTACGGTATTGGGATTTTTCAAATCTAAGGATAGTTCAGGAACTACGGTAGGAAATTATGAATGGAAGGTTGAAAATAAGGAAGATTTTAGGTATTGAAACCAAWCACAATCATTGGAAATGCAATTTGAACGACAATGAAGTTGATAATGTGACTAAATTTCTTTGCTGTTTTACTTTTCAGTTCTACAATGACCTAACTTTTATTCCGCTGAATGAATTCTCAAACTTAAATCCTCGGAATGAAAGACAATACGAAGAAATGTACCCGACTAGACCATTATTTGTCCCTCCATGGATTTTTTTTCCGGATAATTTCGAGGCCTGAGAATCTGAAAAAAATACAGAGTGCTCATTTTCTGAATAATGAGAAACTAAAAGGGCACATCAAGATGAACAGAAGGTTTTCTATTGTAAGTATTCAACAGATGGAGCCTGATAAAAATTTATAGGAATCCAATTGAAAAATTGTGAAAAATAATCGAAGTACACTTACCGTAAACACCCTAATAGAACGCGAACCGGACTTTGAGCATATATATCTCGGTTCTTTCGAAAGATATCAAAAAAGTTGCCAACTATTAAAATGTATATCATGATATCAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTACGAAAAATCTCCTGT</pcr_primer_p1>
		<pcr_primer_p2>CAGCAAAGAAATTTAGTCACATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAACCCATTTTCCAATTTGTTTGGCAATGTCTTCACAGTATCGTAGTACGGTATTGGGATTTTTCAAATCTAAGGATAGTTCAGGAACTACGGTAGGAAATTATGAATGGAAGGTTGAAAATAAGGAAGATTTTAGGTATTGAAACCAAACACAATCATTGGAAATGCAATTTGAACGACAATGAAGTTGATAATGTGACTAAATTTCTTTGCTG</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAACCCATTTTCCAATTTGTTTGGCAATGTCTTCACAGTATCGTAGTACGGTATTGGGATTTTTCAAATCTAAGGATAGTTCAGGAACTACGGTAGGAAATTATGAATGGAAGGTTGAAAATAAGGAAGATTTTAGGTATTGAAACCAAWCACAATCATTGGAAATGCAATTTGAACGACAATGAAGTTGATAATGTGACTAAATTTCTTTGCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26394</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>144636</contig_pos>
        <strand>+</strand>
        <context>AACMAAWCAC[A/T]ATCATTGGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAATGGAAGGTTGAAAATAAGGAAGATTTTAGGTATTGAAACCAAACAC</left_flank>
        <right_flank>ATCATTGGAAATGCAATTTGAACGACAATGAAGTTGATAATGTGACTAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTTAGTGATAATTTTTCAATTATCGTCACTAAATCATGTGAATTTCTTCGCACTATGTATTCCTCATTGACTTAAAGGTGGGGGGACATGAAAAAAATAATTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAAGGCGATGATTGAGTGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAAAAAGCGCACGCCCGTTTGCATACATAAAGGCAAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGATAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAACCCATTTTCCAATTTGTTTGGCAATGTCTTCACAGTATCGTAGTACGGTATTGGGATTTTTCAAATCTAAGGATAGTTCAGGAACTACGGTAGGAAATTATGAATGGAAGGTTGAAAATAAGGAAGATTTTAGGTATTGAAACCAAACACAATCATTGGAAATGCAATTTGAACGACAATGAAGTTGATAATGTGACTAAATTTCTTTGCTGTTTTACTTTTCAGTTCTACAATGACCTAACTTTTATTCCGCTGAATGAATTCTCAAACTTAAATCCTCGGAATGAAAGACAATACGAAGAAATGTACCCGACTAGACCATTATTTGTCCCTCCATGGATTTTTTTTCCGGATAATTTCGAGGCCTGAGAATCTGAAAAAAATACAGAGTGCTCATTTTCTGAATAATGAGAAACTAAAAGGGCACATCAAGATGAACAGAAGGTTTTCTATTGTAAGTATTCAACAGATGGAGCCTGATAAAAATTTATAGGAATCCAATTGAAAAATTGTGAAAAATAATCGAAGTACACTTACCGTAAACACCCTAATAGAACGCGAACCGGACTTTGAGCATATATATCTCGGTTCTTTCGAAAGATATCAAAAAAGTTGCCAACTATTAAAATGTATATCATGATATCAGCAACA</canonical>
            <polymorphic>CATTTTAGTGATAATTTTTCAATTATCGTCACTAAATCATGTGAATTTCTTCGCACTATGTATTCCTCATTGACTTAAAGGTGGGGGGACATGAAAAAAATAATTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAAGGCGATGATTGAGTGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAAAAAGCGCACGCCCGTTTGCATACATAAAGGCAAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGATAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAACCCATTTTCCAATTTGTTTGGCAATGTCTTCACAGTATCGTAGTACGGTATTGGGATTTTTCAAATCTAAGGATAGTTCAGGAACTACGGTAGGAAATTATGAATGGAAGGTTGAAAATAAGGAAGATTTTAGGTATTGAAACCAAACACWATCATTGGAAATGCAATTTGAACGACAATGAAGTTGATAATGTGACTAAATTTCTTTGCTGTTTTACTTTTCAGTTCTACAATGACCTAACTTTTATTCCGCTGAATGAATTCTCAAACTTAAATCCTCGGAATGAAAGACAATACGAAGAAATGTACCCGACTAGACCATTATTTGTCCCTCCATGGATTTTTTTTCCGGATAATTTCGAGGCCTGAGAATCTGAAAAAAATACAGAGTGCTCATTTTCTGAATAATGAGAAACTAAAAGGGCACATCAAGATGAACAGAAGGTTTTCTATTGTAAGTATTCAACAGATGGAGCCTGATAAAAATTTATAGGAATCCAATTGAAAAATTGTGAAAAATAATCGAAGTACACTTACCGTAAACACCCTAATAGAACGCGAACCGGACTTTGAGCATATATATCTCGGTTCTTTCGAAAGATATCAAAAAAGTTGCCAACTATTAAAATGTATATCATGATATCAGCAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTACGAAAAATCTCCTGT</pcr_primer_p1>
		<pcr_primer_p2>CAGCAAAGAAATTTAGTCACATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAACCCATTTTCCAATTTGTTTGGCAATGTCTTCACAGTATCGTAGTACGGTATTGGGATTTTTCAAATCTAAGGATAGTTCAGGAACTACGGTAGGAAATTATGAATGGAAGGTTGAAAATAAGGAAGATTTTAGGTATTGAAACCAAACACAATCATTGGAAATGCAATTTGAACGACAATGAAGTTGATAATGTGACTAAATTTCTTTGCTG</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAACCCATTTTCCAATTTGTTTGGCAATGTCTTCACAGTATCGTAGTACGGTATTGGGATTTTTCAAATCTAAGGATAGTTCAGGAACTACGGTAGGAAATTATGAATGGAAGGTTGAAAATAAGGAAGATTTTAGGTATTGAAACCAAACACWATCATTGGAAATGCAATTTGAACGACAATGAAGTTGATAATGTGACTAAATTTCTTTGCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26395</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>144749</contig_pos>
        <strand>+</strand>
        <context>TGAATGAATT[C/T]TCAAAYTTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTACTTTTCAGTTCTACAATGACCTAACTTTTATTCCGCTGAATGAATT</left_flank>
        <right_flank>TCAAACTTAAATCCTCGGAATGAAAGACAATACGAAGAAATGTACCCGAC</right_flank>
        <qual_score>146</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAAGGCGATGATTGAGTGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAAAAAGCGCACGCCCGTTTGCATACATAAAGGCAAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGATAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAACCCATTTTCCAATTTGTTTGGCAATGTCTTCACAGTATCGTAGTACGGTATTGGGATTTTTCAAATCTAAGGATAGTTCAGGAACTACGGTAGGAAATTATGAATGGAAGGTTGAAAATAAGGAAGATTTTAGGTATTGAAACCAAACACAATCATTGGAAATGCAATTTGAACGACAATGAAGTTGATAATGTGACTAAATTTCTTTGCTGTTTTACTTTTCAGTTCTACAATGACCTAACTTTTATTCCGCTGAATGAATTCTCAAACTTAAATCCTCGGAATGAAAGACAATACGAAGAAATGTACCCGACTAGACCATTATTTGTCCCTCCATGGATTTTTTTTCCGGATAATTTCGAGGCCTGAGAATCTGAAAAAAATACAGAGTGCTCATTTTCTGAATAATGAGAAACTAAAAGGGCACATCAAGATGAACAGAAGGTTTTCTATTGTAAGTATTCAACAGATGGAGCCTGATAAAAATTTATAGGAATCCAATTGAAAAATTGTGAAAAATAATCGAAGTACACTTACCGTAAACACCCTAATAGAACGCGAACCGGACTTTGAGCATATATATCTCGGTTCTTTCGAAAGATATCAAAAAAGTTGCCAACTATTAAAATGTATATCATGATATCAGCAACATTTTAGCAATTACCTATTTTTCGATATCTCCCACAGAAATGTGACGGTTCGGGTGGCGTTCTATTAGAGTGTTTACGGTATGTTGACAAAATTGTTAAGAGAAAAAAAAACAA</canonical>
            <polymorphic>ATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAAGGCGATGATTGAGTGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAAAAAGCGCACGCCCGTTTGCATACATAAAGGCAAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGATAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAACCCATTTTCCAATTTGTTTGGCAATGTCTTCACAGTATCGTAGTACGGTATTGGGATTTTTCAAATCTAAGGATAGTTCAGGAACTACGGTAGGAAATTATGAATGGAAGGTTGAAAATAAGGAAGATTTTAGGTATTGAAACCAAACACAATCATTGGAAATGCAATTTGAACGACAATGAAGTTGATAATGTGACTAAATTTCTTTGCTGTTTTACTTTTCAGTTCTACAATGACCTAACTTTTATTCCGCTGAATGAATTYTCAAACTTAAATCCTCGGAATGAAAGACAATACGAAGAAATGTACCCGACTAGACCATTATTTGTCCCTCCATGGATTTTTTTTCCGGATAATTTCGAGGCCTGAGAATCTGAAAAAAATACAGAGTGCTCATTTTCTGAATAATGAGAAACTAAAAGGGCACATCAAGATGAACAGAAGGTTTTCTATTGTAAGTATTCAACAGATGGAGCCTGATAAAAATTTATAGGAATCCAATTGAAAAATTGTGAAAAATAATCGAAGTACACTTACCGTAAACACCCTAATAGAACGCGAACCGGACTTTGAGCATATATATCTCGGTTCTTTCGAAAGATATCAAAAAAGTTGCCAACTATTAAAATGTATATCATGATATCAGCAACATTTTAGCAATTACCTATTTTTCGATATCTCCCACAGAAATGTGACGGTTCGGGTGGCGTTCTATTAGAGTGTTTACGGTATGTTGACAAAATTGTTAAGAGAAAAAAAAACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>435 280 225 60</canonical_bands>
                <polymorphic_bands>435 285 280</polymorphic_bands>
            </assay>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>495 319 186</canonical_bands>
                <polymorphic_bands>681 319</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTGCTGTTTTACTTTTCAGT</pcr_primer_p1>
		<pcr_primer_p2>TAGAAAACCTTCTGTTCATCTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTTTGCTGTTTTACTTTTCAGTTCTACAATGACCTAACTTTTATTCCGCTGAATGAATTCTCAAACTTAAATCCTCGGAATGAAAGACAATACGAAGAAATGTACCCGACTAGACCATTATTTGTCCCTCCATGGATTTTTTTTCCGGATAATTTCGAGGCCTGAGAATCTGAAAAAAATACAGAGTGCTCATTTTCTGAATAATGAGAAACTAAAAGGGCACATCAAGATGAACAGAAGGTTTTCTA</canonical_amplicon>
		<polymorphic_amplicon>TCTTTGCTGTTTTACTTTTCAGTTCTACAATGACCTAACTTTTATTCCGCTGAATGAATTYTCAAACTTAAATCCTCGGAATGAAAGACAATACGAAGAAATGTACCCGACTAGACCATTATTTGTCCCTCCATGGATTTTTTTTCCGGATAATTTCGAGGCCTGAGAATCTGAAAAAAATACAGAGTGCTCATTTTCTGAATAATGAGAAACTAAAAGGGCACATCAAGATGAACAGAAGGTTTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26396</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>144755</contig_pos>
        <strand>+</strand>
        <context>AATTYTCAAA[C/T]TTAAATCCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCAGTTCTACAATGACCTAACTTTTATTCCGCTGAATGAATTCTCAAA</left_flank>
        <right_flank>TTAAATCCTCGGAATGAAAGACAATACGAAGAAATGTACCCGACTAGACC</right_flank>
        <qual_score>146</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAAGGCGATGATTGAGTGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAAAAAGCGCACGCCCGTTTGCATACATAAAGGCAAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGATAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAACCCATTTTCCAATTTGTTTGGCAATGTCTTCACAGTATCGTAGTACGGTATTGGGATTTTTCAAATCTAAGGATAGTTCAGGAACTACGGTAGGAAATTATGAATGGAAGGTTGAAAATAAGGAAGATTTTAGGTATTGAAACCAAACACAATCATTGGAAATGCAATTTGAACGACAATGAAGTTGATAATGTGACTAAATTTCTTTGCTGTTTTACTTTTCAGTTCTACAATGACCTAACTTTTATTCCGCTGAATGAATTCTCAAACTTAAATCCTCGGAATGAAAGACAATACGAAGAAATGTACCCGACTAGACCATTATTTGTCCCTCCATGGATTTTTTTTCCGGATAATTTCGAGGCCTGAGAATCTGAAAAAAATACAGAGTGCTCATTTTCTGAATAATGAGAAACTAAAAGGGCACATCAAGATGAACAGAAGGTTTTCTATTGTAAGTATTCAACAGATGGAGCCTGATAAAAATTTATAGGAATCCAATTGAAAAATTGTGAAAAATAATCGAAGTACACTTACCGTAAACACCCTAATAGAACGCGAACCGGACTTTGAGCATATATATCTCGGTTCTTTCGAAAGATATCAAAAAAGTTGCCAACTATTAAAATGTATATCATGATATCAGCAACATTTTAGCAATTACCTATTTTTCGATATCTCCCACAGAAATGTGACGGTTCGGGTGGCGTTCTATTAGAGTGTTTACGGTATGTTGACAAAATTGTTAAGAGAAAAAAAAACAAAACTTT</canonical>
            <polymorphic>TTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAAGGCGATGATTGAGTGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAAAAAGCGCACGCCCGTTTGCATACATAAAGGCAAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGATAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAACCCATTTTCCAATTTGTTTGGCAATGTCTTCACAGTATCGTAGTACGGTATTGGGATTTTTCAAATCTAAGGATAGTTCAGGAACTACGGTAGGAAATTATGAATGGAAGGTTGAAAATAAGGAAGATTTTAGGTATTGAAACCAAACACAATCATTGGAAATGCAATTTGAACGACAATGAAGTTGATAATGTGACTAAATTTCTTTGCTGTTTTACTTTTCAGTTCTACAATGACCTAACTTTTATTCCGCTGAATGAATTCTCAAAYTTAAATCCTCGGAATGAAAGACAATACGAAGAAATGTACCCGACTAGACCATTATTTGTCCCTCCATGGATTTTTTTTCCGGATAATTTCGAGGCCTGAGAATCTGAAAAAAATACAGAGTGCTCATTTTCTGAATAATGAGAAACTAAAAGGGCACATCAAGATGAACAGAAGGTTTTCTATTGTAAGTATTCAACAGATGGAGCCTGATAAAAATTTATAGGAATCCAATTGAAAAATTGTGAAAAATAATCGAAGTACACTTACCGTAAACACCCTAATAGAACGCGAACCGGACTTTGAGCATATATATCTCGGTTCTTTCGAAAGATATCAAAAAAGTTGCCAACTATTAAAATGTATATCATGATATCAGCAACATTTTAGCAATTACCTATTTTTCGATATCTCCCACAGAAATGTGACGGTTCGGGTGGCGTTCTATTAGAGTGTTTACGGTATGTTGACAAAATTGTTAAGAGAAAAAAAAACAAAACTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTGCTGTTTTACTTTTCAGT</pcr_primer_p1>
		<pcr_primer_p2>TAGAAAACCTTCTGTTCATCTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTTTGCTGTTTTACTTTTCAGTTCTACAATGACCTAACTTTTATTCCGCTGAATGAATTCTCAAACTTAAATCCTCGGAATGAAAGACAATACGAAGAAATGTACCCGACTAGACCATTATTTGTCCCTCCATGGATTTTTTTTCCGGATAATTTCGAGGCCTGAGAATCTGAAAAAAATACAGAGTGCTCATTTTCTGAATAATGAGAAACTAAAAGGGCACATCAAGATGAACAGAAGGTTTTCTA</canonical_amplicon>
		<polymorphic_amplicon>TCTTTGCTGTTTTACTTTTCAGTTCTACAATGACCTAACTTTTATTCCGCTGAATGAATTCTCAAAYTTAAATCCTCGGAATGAAAGACAATACGAAGAAATGTACCCGACTAGACCATTATTTGTCCCTCCATGGATTTTTTTTCCGGATAATTTCGAGGCCTGAGAATCTGAAAAAAATACAGAGTGCTCATTTTCTGAATAATGAGAAACTAAAAGGGCACATCAAGATGAACAGAAGGTTTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26397</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>144826</contig_pos>
        <strand>+</strand>
        <context>CCTCCATGGA[A/T]TTTTTTTCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACAATACGAAGAAATGTACCCGACTAGACCATTATTTGTCCCTCCATGGA</left_flank>
        <right_flank>TTTTTTTCCGGATAATTTCGAGGCCTGAGAATCTGAAAAAAATACAGAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCACGCGGGCAAAGAAAAAGCGCACGCCCGTTTGCATACATAAAGGCAAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGATAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAACCCATTTTCCAATTTGTTTGGCAATGTCTTCACAGTATCGTAGTACGGTATTGGGATTTTTCAAATCTAAGGATAGTTCAGGAACTACGGTAGGAAATTATGAATGGAAGGTTGAAAATAAGGAAGATTTTAGGTATTGAAACCAAACACAATCATTGGAAATGCAATTTGAACGACAATGAAGTTGATAATGTGACTAAATTTCTTTGCTGTTTTACTTTTCAGTTCTACAATGACCTAACTTTTATTCCGCTGAATGAATTCTCAAACTTAAATCCTCGGAATGAAAGACAATACGAAGAAATGTACCCGACTAGACCATTATTTGTCCCTCCATGGATTTTTTTTCCGGATAATTTCGAGGCCTGAGAATCTGAAAAAAATACAGAGTGCTCATTTTCTGAATAATGAGAAACTAAAAGGGCACATCAAGATGAACAGAAGGTTTTCTATTGTAAGTATTCAACAGATGGAGCCTGATAAAAATTTATAGGAATCCAATTGAAAAATTGTGAAAAATAATCGAAGTACACTTACCGTAAACACCCTAATAGAACGCGAACCGGACTTTGAGCATATATATCTCGGTTCTTTCGAAAGATATCAAAAAAGTTGCCAACTATTAAAATGTATATCATGATATCAGCAACATTTTAGCAATTACCTATTTTTCGATATCTCCCACAGAAATGTGACGGTTCGGGTGGCGTTCTATTAGAGTGTTTACGGTATGTTGACAAAATTGTTAAGAGAAAAAAAAACAAAACTTTTTATTGTAAACAATATTTTGATTAGAAGCTTTAAAAAAACCGAAGAACACAAAAAATATCATATTATCAAA</canonical>
            <polymorphic>GCCACGCGGGCAAAGAAAAAGCGCACGCCCGTTTGCATACATAAAGGCAAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGATAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAACCCATTTTCCAATTTGTTTGGCAATGTCTTCACAGTATCGTAGTACGGTATTGGGATTTTTCAAATCTAAGGATAGTTCAGGAACTACGGTAGGAAATTATGAATGGAAGGTTGAAAATAAGGAAGATTTTAGGTATTGAAACCAAACACAATCATTGGAAATGCAATTTGAACGACAATGAAGTTGATAATGTGACTAAATTTCTTTGCTGTTTTACTTTTCAGTTCTACAATGACCTAACTTTTATTCCGCTGAATGAATTCTCAAACTTAAATCCTCGGAATGAAAGACAATACGAAGAAATGTACCCGACTAGACCATTATTTGTCCCTCCATGGAWTTTTTTTCCGGATAATTTCGAGGCCTGAGAATCTGAAAAAAATACAGAGTGCTCATTTTCTGAATAATGAGAAACTAAAAGGGCACATCAAGATGAACAGAAGGTTTTCTATTGTAAGTATTCAACAGATGGAGCCTGATAAAAATTTATAGGAATCCAATTGAAAAATTGTGAAAAATAATCGAAGTACACTTACCGTAAACACCCTAATAGAACGCGAACCGGACTTTGAGCATATATATCTCGGTTCTTTCGAAAGATATCAAAAAAGTTGCCAACTATTAAAATGTATATCATGATATCAGCAACATTTTAGCAATTACCTATTTTTCGATATCTCCCACAGAAATGTGACGGTTCGGGTGGCGTTCTATTAGAGTGTTTACGGTATGTTGACAAAATTGTTAAGAGAAAAAAAAACAAAACTTTTTATTGTAAACAATATTTTGATTAGAAGCTTTAAAAAAACCGAAGAACACAAAAAATATCATATTATCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTGCTGTTTTACTTTTCAGT</pcr_primer_p1>
		<pcr_primer_p2>TAGAAAACCTTCTGTTCATCTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTTTGCTGTTTTACTTTTCAGTTCTACAATGACCTAACTTTTATTCCGCTGAATGAATTCTCAAACTTAAATCCTCGGAATGAAAGACAATACGAAGAAATGTACCCGACTAGACCATTATTTGTCCCTCCATGGATTTTTTTTCCGGATAATTTCGAGGCCTGAGAATCTGAAAAAAATACAGAGTGCTCATTTTCTGAATAATGAGAAACTAAAAGGGCACATCAAGATGAACAGAAGGTTTTCTA</canonical_amplicon>
		<polymorphic_amplicon>TCTTTGCTGTTTTACTTTTCAGTTCTACAATGACCTAACTTTTATTCCGCTGAATGAATTCTCAAACTTAAATCCTCGGAATGAAAGACAATACGAAGAAATGTACCCGACTAGACCATTATTTGTCCCTCCATGGAWTTTTTTTCCGGATAATTTCGAGGCCTGAGAATCTGAAAAAAATACAGAGTGCTCATTTTCTGAATAATGAGAAACTAAAAGGGCACATCAAGATGAACAGAAGGTTTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26398</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>209326</contig_pos>
        <strand></strand>
        <context>TGGTAATCTT[T/G]TGTTTYGAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GCTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTT</left_flank>
        <right_flank>TGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCTGTGGGAGAAAAGCGTGCAGACTAATACGATTGTCTACTCTATTCATTTTTGTTCCCTTTATATGTTTTTCAGGTTCTCGCATTCATTACGGAACAAATATGACACTACCAGTTGGGCTTATTTATCATATATGTATATCTTTAATGAATTCACAGACAAATAGTTTCATGACGGAACCTCATTATGAAATGATGTTCATTCTTCTTATTCCGGCTGTTTCTCATAACTCGGAATTCTTCGTATTTTTAAGACTAGTATTATTCTAGTATGCGGGTTTCTATACATTTTCTCAATTTTTTTCGGCCAACTAGATTTTCTAACTTCTTTGTGACATTGATTAAAAATTTTTGGGAAGCGAAAAAAAACAGAAAAACGAGAAATTAGGATAAAAACGAATTACGGAAATTTGAGACACAAAGGCACACTGGTTTATGGATAATATGCTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGA</canonical>
            <polymorphic>TTTTTCTGTGGGAGAAAAGCGTGCAGACTAATACGATTGTCTACTCTATTCATTTTTGTTCCCTTTATATGTTTTTCAGGTTCTCGCATTCATTACGGAACAAATATGACACTACCAGTTGGGCTTATTTATCATATATGTATATCTTTAATGAATTCACAGACAAATAGTTTCATGACGGAACCTCATTATGAAATGATGTTCATTCTTCTTATTCCGGCTGTTTCTCATAACTCGGAATTCTTCGTATTTTTAAGACTAGTATTATTCTAGTATGCGGGTTTCTATACATTTTCTCAATTTTTTTCGGCCAACTAGATTTTCTAACTTCTTTGTGACATTGATTAAAAATTTTTGGGAAGCGAAAAAAAACAGAAAAACGAGAAATTAGGATAAAAACGAATTACGGAAATTTGAGACACAAAGGCACACTGGTTTATGGATAATATGCTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTKTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTAACTTCTTTGTGACATTGAT</pcr_primer_p1>
		<pcr_primer_p2>GGCCTTCTATGTACTAGAGTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCTAACTTCTTTGTGACATTGATTAAAAATTTTTGGGAAGCGAAAAAAAACAGAAAAACGAGAAATTAGGATAAAAACGAATTACGGAAATTTGAGACACAAAGGCACACTGGTTTATGGATAATATGCTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCC</canonical_amplicon>
		<polymorphic_amplicon>TTCTAACTTCTTTGTGACATTGATTAAAAATTTTTGGGAAGCGAAAAAAAACAGAAAAACGAGAAATTAGGATAAAAACGAATTACGGAAATTTGAGACACAAAGGCACACTGGTTTATGGATAATATGCTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTKTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26399</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>209332</contig_pos>
        <strand></strand>
        <context>TCTTKTGTTT[T/C]GAATWGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTT</left_flank>
        <right_flank>GAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGGGAGAAAAGCGTGCAGACTAATACGATTGTCTACTCTATTCATTTTTGTTCCCTTTATATGTTTTTCAGGTTCTCGCATTCATTACGGAACAAATATGACACTACCAGTTGGGCTTATTTATCATATATGTATATCTTTAATGAATTCACAGACAAATAGTTTCATGACGGAACCTCATTATGAAATGATGTTCATTCTTCTTATTCCGGCTGTTTCTCATAACTCGGAATTCTTCGTATTTTTAAGACTAGTATTATTCTAGTATGCGGGTTTCTATACATTTTCTCAATTTTTTTCGGCCAACTAGATTTTCTAACTTCTTTGTGACATTGATTAAAAATTTTTGGGAAGCGAAAAAAAACAGAAAAACGAGAAATTAGGATAAAAACGAATTACGGAAATTTGAGACACAAAGGCACACTGGTTTATGGATAATATGCTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGT</canonical>
            <polymorphic>TGTGGGAGAAAAGCGTGCAGACTAATACGATTGTCTACTCTATTCATTTTTGTTCCCTTTATATGTTTTTCAGGTTCTCGCATTCATTACGGAACAAATATGACACTACCAGTTGGGCTTATTTATCATATATGTATATCTTTAATGAATTCACAGACAAATAGTTTCATGACGGAACCTCATTATGAAATGATGTTCATTCTTCTTATTCCGGCTGTTTCTCATAACTCGGAATTCTTCGTATTTTTAAGACTAGTATTATTCTAGTATGCGGGTTTCTATACATTTTCTCAATTTTTTTCGGCCAACTAGATTTTCTAACTTCTTTGTGACATTGATTAAAAATTTTTGGGAAGCGAAAAAAAACAGAAAAACGAGAAATTAGGATAAAAACGAATTACGGAAATTTGAGACACAAAGGCACACTGGTTTATGGATAATATGCTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTYGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTAACTTCTTTGTGACATTGAT</pcr_primer_p1>
		<pcr_primer_p2>GGCCTTCTATGTACTAGAGTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCTAACTTCTTTGTGACATTGATTAAAAATTTTTGGGAAGCGAAAAAAAACAGAAAAACGAGAAATTAGGATAAAAACGAATTACGGAAATTTGAGACACAAAGGCACACTGGTTTATGGATAATATGCTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCC</canonical_amplicon>
		<polymorphic_amplicon>TTCTAACTTCTTTGTGACATTGATTAAAAATTTTTGGGAAGCGAAAAAAAACAGAAAAACGAGAAATTAGGATAAAAACGAATTACGGAAATTTGAGACACAAAGGCACACTGGTTTATGGATAATATGCTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTYGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26400</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>209337</contig_pos>
        <strand></strand>
        <context>TGTTTYGAAT[A/T]GAAAACTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAAT</left_flank>
        <right_flank>GAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAAAAGCGTGCAGACTAATACGATTGTCTACTCTATTCATTTTTGTTCCCTTTATATGTTTTTCAGGTTCTCGCATTCATTACGGAACAAATATGACACTACCAGTTGGGCTTATTTATCATATATGTATATCTTTAATGAATTCACAGACAAATAGTTTCATGACGGAACCTCATTATGAAATGATGTTCATTCTTCTTATTCCGGCTGTTTCTCATAACTCGGAATTCTTCGTATTTTTAAGACTAGTATTATTCTAGTATGCGGGTTTCTATACATTTTCTCAATTTTTTTCGGCCAACTAGATTTTCTAACTTCTTTGTGACATTGATTAAAAATTTTTGGGAAGCGAAAAAAAACAGAAAAACGAGAAATTAGGATAAAAACGAATTACGGAAATTTGAGACACAAAGGCACACTGGTTTATGGATAATATGCTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTC</canonical>
            <polymorphic>GAGAAAAGCGTGCAGACTAATACGATTGTCTACTCTATTCATTTTTGTTCCCTTTATATGTTTTTCAGGTTCTCGCATTCATTACGGAACAAATATGACACTACCAGTTGGGCTTATTTATCATATATGTATATCTTTAATGAATTCACAGACAAATAGTTTCATGACGGAACCTCATTATGAAATGATGTTCATTCTTCTTATTCCGGCTGTTTCTCATAACTCGGAATTCTTCGTATTTTTAAGACTAGTATTATTCTAGTATGCGGGTTTCTATACATTTTCTCAATTTTTTTCGGCCAACTAGATTTTCTAACTTCTTTGTGACATTGATTAAAAATTTTTGGGAAGCGAAAAAAAACAGAAAAACGAGAAATTAGGATAAAAACGAATTACGGAAATTTGAGACACAAAGGCACACTGGTTTATGGATAATATGCTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATWGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTAACTTCTTTGTGACATTGAT</pcr_primer_p1>
		<pcr_primer_p2>GGCCTTCTATGTACTAGAGTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCTAACTTCTTTGTGACATTGATTAAAAATTTTTGGGAAGCGAAAAAAAACAGAAAAACGAGAAATTAGGATAAAAACGAATTACGGAAATTTGAGACACAAAGGCACACTGGTTTATGGATAATATGCTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCC</canonical_amplicon>
		<polymorphic_amplicon>TTCTAACTTCTTTGTGACATTGATTAAAAATTTTTGGGAAGCGAAAAAAAACAGAAAAACGAGAAATTAGGATAAAAACGAATTACGGAAATTTGAGACACAAAGGCACACTGGTTTATGGATAATATGCTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATWGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26401</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>209359</contig_pos>
        <strand></strand>
        <context>ATATGAAAAT[T/C]ATCTGATTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAAT</left_flank>
        <right_flank>ATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATTGTCTACTCTATTCATTTTTGTTCCCTTTATATGTTTTTCAGGTTCTCGCATTCATTACGGAACAAATATGACACTACCAGTTGGGCTTATTTATCATATATGTATATCTTTAATGAATTCACAGACAAATAGTTTCATGACGGAACCTCATTATGAAATGATGTTCATTCTTCTTATTCCGGCTGTTTCTCATAACTCGGAATTCTTCGTATTTTTAAGACTAGTATTATTCTAGTATGCGGGTTTCTATACATTTTCTCAATTTTTTTCGGCCAACTAGATTTTCTAACTTCTTTGTGACATTGATTAAAAATTTTTGGGAAGCGAAAAAAAACAGAAAAACGAGAAATTAGGATAAAAACGAATTACGGAAATTTGAGACACAAAGGCACACTGGTTTATGGATAATATGCTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACA</canonical>
            <polymorphic>CGATTGTCTACTCTATTCATTTTTGTTCCCTTTATATGTTTTTCAGGTTCTCGCATTCATTACGGAACAAATATGACACTACCAGTTGGGCTTATTTATCATATATGTATATCTTTAATGAATTCACAGACAAATAGTTTCATGACGGAACCTCATTATGAAATGATGTTCATTCTTCTTATTCCGGCTGTTTCTCATAACTCGGAATTCTTCGTATTTTTAAGACTAGTATTATTCTAGTATGCGGGTTTCTATACATTTTCTCAATTTTTTTCGGCCAACTAGATTTTCTAACTTCTTTGTGACATTGATTAAAAATTTTTGGGAAGCGAAAAAAAACAGAAAAACGAGAAATTAGGATAAAAACGAATTACGGAAATTTGAGACACAAAGGCACACTGGTTTATGGATAATATGCTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATYATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>121 120 119 106 85 60 60 51 49 43 36 33 24 19 17 16 13 10 9 9</canonical_bands>
                <polymorphic_bands>179 121 120 106 85 60 51 49 43 36 33 24 19 17 16 13 10 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGATCTCCTAAGTCTTGGTAA</pcr_primer_p1>
		<pcr_primer_p2>AAACGGGTAAAACAAACAAG</pcr_primer_p2>
		<pcr_amplicon_size>616</pcr_amplicon_size>
		<canonical_amplicon>TGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACAC</canonical_amplicon>
		<polymorphic_amplicon>TGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATYATCTGATTACCATAAACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26402</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>209423</contig_pos>
        <strand></strand>
        <context>TTTAATTCAT[T/A]Wacagtggtg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCAT</left_flank>
        <right_flank>AACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACAAATATGACACTACCAGTTGGGCTTATTTATCATATATGTATATCTTTAATGAATTCACAGACAAATAGTTTCATGACGGAACCTCATTATGAAATGATGTTCATTCTTCTTATTCCGGCTGTTTCTCATAACTCGGAATTCTTCGTATTTTTAAGACTAGTATTATTCTAGTATGCGGGTTTCTATACATTTTCTCAATTTTTTTCGGCCAACTAGATTTTCTAACTTCTTTGTGACATTGATTAAAAATTTTTGGGAAGCGAAAAAAAACAGAAAAACGAGAAATTAGGATAAAAACGAATTACGGAAATTTGAGACACAAAGGCACACTGGTTTATGGATAATATGCTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTTTATTGTAGG</canonical>
            <polymorphic>GAACAAATATGACACTACCAGTTGGGCTTATTTATCATATATGTATATCTTTAATGAATTCACAGACAAATAGTTTCATGACGGAACCTCATTATGAAATGATGTTCATTCTTCTTATTCCGGCTGTTTCTCATAACTCGGAATTCTTCGTATTTTTAAGACTAGTATTATTCTAGTATGCGGGTTTCTATACATTTTCTCAATTTTTTTCGGCCAACTAGATTTTCTAACTTCTTTGTGACATTGATTAAAAATTTTTGGGAAGCGAAAAAAAACAGAAAAACGAGAAATTAGGATAAAAACGAATTACGGAAATTTGAGACACAAAGGCACACTGGTTTATGGATAATATGCTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATWAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTTTATTGTAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>155 127 124 116 105 92 87 55 51 40 29 11 8</canonical_bands>
                <polymorphic_bands>155 127 124 116 105 95 92 55 51 40 29 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGATCTCCTAAGTCTTGGTAA</pcr_primer_p1>
		<pcr_primer_p2>AAACGGGTAAAACAAACAAG</pcr_primer_p2>
		<pcr_amplicon_size>616</pcr_amplicon_size>
		<canonical_amplicon>TGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTT</canonical_amplicon>
		<polymorphic_amplicon>TGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATWAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26403</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>209424</contig_pos>
        <strand></strand>
        <context>TTAATTCATW[A/T]acagtggtga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATT</left_flank>
        <right_flank>ACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAAATATGACACTACCAGTTGGGCTTATTTATCATATATGTATATCTTTAATGAATTCACAGACAAATAGTTTCATGACGGAACCTCATTATGAAATGATGTTCATTCTTCTTATTCCGGCTGTTTCTCATAACTCGGAATTCTTCGTATTTTTAAGACTAGTATTATTCTAGTATGCGGGTTTCTATACATTTTCTCAATTTTTTTCGGCCAACTAGATTTTCTAACTTCTTTGTGACATTGATTAAAAATTTTTGGGAAGCGAAAAAAAACAGAAAAACGAGAAATTAGGATAAAAACGAATTACGGAAATTTGAGACACAAAGGCACACTGGTTTATGGATAATATGCTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTTTATTGTAGGA</canonical>
            <polymorphic>AACAAATATGACACTACCAGTTGGGCTTATTTATCATATATGTATATCTTTAATGAATTCACAGACAAATAGTTTCATGACGGAACCTCATTATGAAATGATGTTCATTCTTCTTATTCCGGCTGTTTCTCATAACTCGGAATTCTTCGTATTTTTAAGACTAGTATTATTCTAGTATGCGGGTTTCTATACATTTTCTCAATTTTTTTCGGCCAACTAGATTTTCTAACTTCTTTGTGACATTGATTAAAAATTTTTGGGAAGCGAAAAAAAACAGAAAAACGAGAAATTAGGATAAAAACGAATTACGGAAATTTGAGACACAAAGGCACACTGGTTTATGGATAATATGCTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATTWACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTTTATTGTAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>155 127 124 116 105 92 87 56 50 40 29 11 8</canonical_bands>
                <polymorphic_bands>155 127 124 116 105 95 92 56 50 40 29 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGATCTCCTAAGTCTTGGTAA</pcr_primer_p1>
		<pcr_primer_p2>AAACGGGTAAAACAAACAAG</pcr_primer_p2>
		<pcr_amplicon_size>616</pcr_amplicon_size>
		<canonical_amplicon>TGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTT</canonical_amplicon>
		<polymorphic_amplicon>TGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATTWACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26404</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>209477</contig_pos>
        <strand></strand>
        <context>ataactttgc[C/T]caaacttrtc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGC</left_flank>
        <right_flank>CAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAATTCACAGACAAATAGTTTCATGACGGAACCTCATTATGAAATGATGTTCATTCTTCTTATTCCGGCTGTTTCTCATAACTCGGAATTCTTCGTATTTTTAAGACTAGTATTATTCTAGTATGCGGGTTTCTATACATTTTCTCAATTTTTTTCGGCCAACTAGATTTTCTAACTTCTTTGTGACATTGATTAAAAATTTTTGGGAAGCGAAAAAAAACAGAAAAACGAGAAATTAGGATAAAAACGAATTACGGAAATTTGAGACACAAAGGCACACTGGTTTATGGATAATATGCTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTTTATTGTAGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCAC</canonical>
            <polymorphic>TGAATTCACAGACAAATAGTTTCATGACGGAACCTCATTATGAAATGATGTTCATTCTTCTTATTCCGGCTGTTTCTCATAACTCGGAATTCTTCGTATTTTTAAGACTAGTATTATTCTAGTATGCGGGTTTCTATACATTTTCTCAATTTTTTTCGGCCAACTAGATTTTCTAACTTCTTTGTGACATTGATTAAAAATTTTTGGGAAGCGAAAAAAAACAGAAAAACGAGAAATTAGGATAAAAACGAATTACGGAAATTTGAGACACAAAGGCACACTGGTTTATGGATAATATGCTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCYCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTTTATTGTAGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCAAAGCTCTTACTTTTAATTC</pcr_primer_p1>
		<pcr_primer_p2>AAACGGGTAAAACAAACAAG</pcr_primer_p2>
		<pcr_amplicon_size>517</pcr_amplicon_size>
		<canonical_amplicon>CCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTT</canonical_amplicon>
		<polymorphic_amplicon>CCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCYCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26405</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>209485</contig_pos>
        <strand></strand>
        <context>gcycaaactt[G/A]tccaatcatc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTT</left_flank>
        <right_flank>TCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGACAAATAGTTTCATGACGGAACCTCATTATGAAATGATGTTCATTCTTCTTATTCCGGCTGTTTCTCATAACTCGGAATTCTTCGTATTTTTAAGACTAGTATTATTCTAGTATGCGGGTTTCTATACATTTTCTCAATTTTTTTCGGCCAACTAGATTTTCTAACTTCTTTGTGACATTGATTAAAAATTTTTGGGAAGCGAAAAAAAACAGAAAAACGAGAAATTAGGATAAAAACGAATTACGGAAATTTGAGACACAAAGGCACACTGGTTTATGGATAATATGCTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTTTATTGTAGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTC</canonical>
            <polymorphic>CAGACAAATAGTTTCATGACGGAACCTCATTATGAAATGATGTTCATTCTTCTTATTCCGGCTGTTTCTCATAACTCGGAATTCTTCGTATTTTTAAGACTAGTATTATTCTAGTATGCGGGTTTCTATACATTTTCTCAATTTTTTTCGGCCAACTAGATTTTCTAACTTCTTTGTGACATTGATTAAAAATTTTTGGGAAGCGAAAAAAAACAGAAAAACGAGAAATTAGGATAAAAACGAATTACGGAAATTTGAGACACAAAGGCACACTGGTTTATGGATAATATGCTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTRTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTTTATTGTAGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCAAAGCTCTTACTTTTAATTC</pcr_primer_p1>
		<pcr_primer_p2>AAACGGGTAAAACAAACAAG</pcr_primer_p2>
		<pcr_amplicon_size>517</pcr_amplicon_size>
		<canonical_amplicon>CCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTT</canonical_amplicon>
		<polymorphic_amplicon>CCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTRTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26406</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>209527</contig_pos>
        <strand></strand>
        <context>atcttaattt[C/T]taamaaatcg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTT</left_flank>
        <right_flank>TAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCATTCTTCTTATTCCGGCTGTTTCTCATAACTCGGAATTCTTCGTATTTTTAAGACTAGTATTATTCTAGTATGCGGGTTTCTATACATTTTCTCAATTTTTTTCGGCCAACTAGATTTTCTAACTTCTTTGTGACATTGATTAAAAATTTTTGGGAAGCGAAAAAAAACAGAAAAACGAGAAATTAGGATAAAAACGAATTACGGAAATTTGAGACACAAAGGCACACTGGTTTATGGATAATATGCTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTTTATTGTAGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTCCGCCCATCGCTTTGCAANNNNNNNNNNTTTTTTAAAAGATTG</canonical>
            <polymorphic>TTCATTCTTCTTATTCCGGCTGTTTCTCATAACTCGGAATTCTTCGTATTTTTAAGACTAGTATTATTCTAGTATGCGGGTTTCTATACATTTTCTCAATTTTTTTCGGCCAACTAGATTTTCTAACTTCTTTGTGACATTGATTAAAAATTTTTGGGAAGCGAAAAAAAACAGAAAAACGAGAAATTAGGATAAAAACGAATTACGGAAATTTGAGACACAAAGGCACACTGGTTTATGGATAATATGCTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTYTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTTTATTGTAGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTCCGCCCATCGCTTTGCAANNNNNNNNNNTTTTTTAAAAGATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCAAAGCTCTTACTTTTAATTC</pcr_primer_p1>
		<pcr_primer_p2>AAACGGGTAAAACAAACAAG</pcr_primer_p2>
		<pcr_amplicon_size>517</pcr_amplicon_size>
		<canonical_amplicon>CCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTT</canonical_amplicon>
		<polymorphic_amplicon>CCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTYTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26407</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>209531</contig_pos>
        <strand></strand>
        <context>taatttytaa[C/A]aaatcgctat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAA</left_flank>
        <right_flank>AAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTCTTATTCCGGCTGTTTCTCATAACTCGGAATTCTTCGTATTTTTAAGACTAGTATTATTCTAGTATGCGGGTTTCTATACATTTTCTCAATTTTTTTCGGCCAACTAGATTTTCTAACTTCTTTGTGACATTGATTAAAAATTTTTGGGAAGCGAAAAAAAACAGAAAAACGAGAAATTAGGATAAAAACGAATTACGGAAATTTGAGACACAAAGGCACACTGGTTTATGGATAATATGCTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTTTATTGTAGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTCCGCCCATCGCTTTGCAANNNNNNNNNNTTTTTTAAAAGATTGGCTT</canonical>
            <polymorphic>TTCTTCTTATTCCGGCTGTTTCTCATAACTCGGAATTCTTCGTATTTTTAAGACTAGTATTATTCTAGTATGCGGGTTTCTATACATTTTCTCAATTTTTTTCGGCCAACTAGATTTTCTAACTTCTTTGTGACATTGATTAAAAATTTTTGGGAAGCGAAAAAAAACAGAAAAACGAGAAATTAGGATAAAAACGAATTACGGAAATTTGAGACACAAAGGCACACTGGTTTATGGATAATATGCTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAAMAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTTTATTGTAGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTCCGCCCATCGCTTTGCAANNNNNNNNNNTTTTTTAAAAGATTGGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCAAAGCTCTTACTTTTAATTC</pcr_primer_p1>
		<pcr_primer_p2>AAACGGGTAAAACAAACAAG</pcr_primer_p2>
		<pcr_amplicon_size>517</pcr_amplicon_size>
		<canonical_amplicon>CCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTT</canonical_amplicon>
		<polymorphic_amplicon>CCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAAMAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26408</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>209587</contig_pos>
        <strand></strand>
        <context>tctgaatttt[G/C]acagacgtga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTT</left_flank>
        <right_flank>ACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATTATTCTAGTATGCGGGTTTCTATACATTTTCTCAATTTTTTTCGGCCAACTAGATTTTCTAACTTCTTTGTGACATTGATTAAAAATTTTTGGGAAGCGAAAAAAAACAGAAAAACGAGAAATTAGGATAAAAACGAATTACGGAAATTTGAGACACAAAGGCACACTGGTTTATGGATAATATGCTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTTTATTGTAGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTCCGCCCATCGCTTTGCAANNNNNNNNNNTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAA</canonical>
            <polymorphic>GTATTATTCTAGTATGCGGGTTTCTATACATTTTCTCAATTTTTTTCGGCCAACTAGATTTTCTAACTTCTTTGTGACATTGATTAAAAATTTTTGGGAAGCGAAAAAAAACAGAAAAACGAGAAATTAGGATAAAAACGAATTACGGAAATTTGAGACACAAAGGCACACTGGTTTATGGATAATATGCTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTSACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTTTATTGTAGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTCCGCCCATCGCTTTGCAANNNNNNNNNNTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCAAAGCTCTTACTTTTAATTC</pcr_primer_p1>
		<pcr_primer_p2>AAACGGGTAAAACAAACAAG</pcr_primer_p2>
		<pcr_amplicon_size>517</pcr_amplicon_size>
		<canonical_amplicon>CCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTT</canonical_amplicon>
		<polymorphic_amplicon>CCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTSACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26409</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>209708</contig_pos>
        <strand></strand>
        <context>aaaaaaaaaa[C/A]tttgaagcgg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAA</left_flank>
        <right_flank>TTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAATTAGGATAAAAACGAATTACGGAAATTTGAGACACAAAGGCACACTGGTTTATGGATAATATGCTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTTTATTGTAGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTCCGCCCATCGCTTTGCAANNNNNNNNNNTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCACCGTTGCGAGCGAGTGGGC</canonical>
            <polymorphic>AGAAATTAGGATAAAAACGAATTACGGAAATTTGAGACACAAAGGCACACTGGTTTATGGATAATATGCTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAAMTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTTTATTGTAGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTCCGCCCATCGCTTTGCAANNNNNNNNNNTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCACCGTTGCGAGCGAGTGGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCAAAGCTCTTACTTTTAATTC</pcr_primer_p1>
		<pcr_primer_p2>AAACGGGTAAAACAAACAAG</pcr_primer_p2>
		<pcr_amplicon_size>517</pcr_amplicon_size>
		<canonical_amplicon>CCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTT</canonical_amplicon>
		<polymorphic_amplicon>CCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAAMTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26410</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>209776</contig_pos>
        <strand></strand>
        <context>tttttctgga[G/A]tttkgctata</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGA</left_flank>
        <right_flank>TTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTTTATTGTAGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTCCGCCCATCGCTTTGCAANNNNNNNNNNTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCACCGTTGCGAGCGAGTGGGCGTCCTTGCACGTCCGATGGGCGGAGCGTCGGTGGGGGGAGGCGGGAATCAAAGTACGCAAACACCGAG</canonical>
            <polymorphic>CTTCGTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGARTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTTTATTGTAGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTCCGCCCATCGCTTTGCAANNNNNNNNNNTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCACCGTTGCGAGCGAGTGGGCGTCCTTGCACGTCCGATGGGCGGAGCGTCGGTGGGGGGAGGCGGGAATCAAAGTACGCAAACACCGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCAAAGCTCTTACTTTTAATTC</pcr_primer_p1>
		<pcr_primer_p2>AAACGGGTAAAACAAACAAG</pcr_primer_p2>
		<pcr_amplicon_size>517</pcr_amplicon_size>
		<canonical_amplicon>CCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTT</canonical_amplicon>
		<polymorphic_amplicon>CCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGARTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26411</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>209780</contig_pos>
        <strand></strand>
        <context>tctggarttt[G/T]gctataactc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTT</left_flank>
        <right_flank>GCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTTTATTGTAGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTCCGCCCATCGCTTTGCAANNNNNNNNNNTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCACCGTTGCGAGCGAGTGGGCGTCCTTGCACGTCCGATGGGCGGAGCGTCGGTGGGGGGAGGCGGGAATCAAAGTACGCAAACACCGAGTCTC</canonical>
            <polymorphic>GTTTTTTTAAACGTTTTTTGTGATCTCCTAAGTCTTGGTAATCTTTTGTTTTGAATAGAAAACTTCAAATATGAAAATTATCTGATTACCATAAACACTCTAGTACATAGAAGGCCACCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTKGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTTTATTGTAGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTCCGCCCATCGCTTTGCAANNNNNNNNNNTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCACCGTTGCGAGCGAGTGGGCGTCCTTGCACGTCCGATGGGCGGAGCGTCGGTGGGGGGAGGCGGGAATCAAAGTACGCAAACACCGAGTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>251 236 115 114 90 90 36 36 11 11 10</canonical_bands>
                <polymorphic_bands>251 236 115 114 101 90 36 36 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCAAAGCTCTTACTTTTAATTC</pcr_primer_p1>
		<pcr_primer_p2>AAACGGGTAAAACAAACAAG</pcr_primer_p2>
		<pcr_amplicon_size>517</pcr_amplicon_size>
		<canonical_amplicon>CCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTGGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTT</canonical_amplicon>
		<polymorphic_amplicon>CCCAAAGCTCTTACTTTTAATTCATTAACAGTGGTGAACATTAGTGAGTGTCACTATATACTTTTGTTCATAACTTTGCCCAAACTTGTCCAATCATCGAAAACTTTTTTGTTAAATGTATCTTAATTTCTAACAAATCGCTATATAAGTATTCTGAAATTCAATCAATTTTTGTGTCTTCTGAATTTTGACAGACGTGACGATGACTCCAGAAGTAAAAAAAAACAATTTTCCGTCAGAATTTTTTTAAAAGATTGGCTTTGTAATAAAAAATGTTTGGTGTAGATTAATTAGCTACCCAAAAAAAAAACTTTGAAGCGGTTTGGAACACTTGCTCTTGAGATGTGCTCACTGGAGCATAAAATGTATTTTTCTGGAGTTTKGCTATAACTCGGCTCAAAATGATTCAAATTTTCTCAAATTTTGAGAGAATGTGTGTCTTTAATTGTCCTACAATATACATATAAAACTTAAAATTTTGGGAACAAAAAATTTTGCTTGTTTGTTTTACCCGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26412</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>246703</contig_pos>
        <strand></strand>
        <context>gataaaggac[T/A]tgaaacaaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GTTTCAAACCGTTTACTTAGGTACCATATATCTCATTTTTGATAAAGGAC</left_flank>
        <right_flank>TGAAACAAATAGTGTCAACTGATGAAAAATAGATGATATTATAGTAAACA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCACCGTTTTTCTGGCACTTTGGACACTTTTGGTGGGGGTTTGATTTTGCGCAGGTTAAGCATATCGAATGACCACAGGAGCCTACAAATGCTCGCCGCGAATCGTTATCTGTAAAAGTTTATACGGATATAGAATCCTGATAATTGGAGCTAACCAAACAGTGTGATTTTATTATTGTCCGTTTTGCATGAATAGCAAATTAGCGATTCCAGATGGAGCATTTTTGGGTAAAAAATTAAACAAACGGAAGAGAAGGTTTAGGCTGAGGAAGGGGAAATATTGCGAAATTCGTATAGGAAGAGTGAAGAGAAAGAGACAACGACGGATGGAAAAGAAAATCAACATCAACAAGAAGAGAACGACTTGACTGTGAACAACAAAAAAGAATCGTAGTTATTTTAACTTCAATTATCTCGGTTCCTTATATTTCAAACCGATTTTATATGGTTTCAAACCGTTTACTTAGGTACCATATATCTCATTTTTGATAAAGGACTTGAAACAAATAGTGTCAACTGATGAAAAATAGATGATATTATAGTAAACAATTTATCAGTTGTCAAGCTTTTGATATCTTTCAGACGAATCGAACTAATTTTGTTGTCGACAAACAATATTGACGGCTTGAGAGGGCTTCTTTTTCAGCTTTTTCACCTTCATCGTTTATCACAACAATAGTTTCCAATGGTTCGGATGCCTGCCAATGAACTCTTGTGACGCCTTGTAAAGAGAGCAAAAAAGGTTTCTACTAATAAGGCAAATAATTCGAAGGGTGAAAAAACCGATTGAGTGGTAAAAAATAACTGATAATATCGAATTTTGTTCCCCCGCTTTTGTGTTTTTACGCCTAAATCGCTGTGTACTCTTTGCACCGCCGAATCGTTGCGCTTACGAATTACTGTAAACACTCTAATAGCATGACTTCCTAAAATTTGTACTTTGAGGCAAATTATCTCGGCTCTTTCAAAAAATGAGACAAAATTGTCAACGAATCAAT</canonical>
            <polymorphic>ATGCACCGTTTTTCTGGCACTTTGGACACTTTTGGTGGGGGTTTGATTTTGCGCAGGTTAAGCATATCGAATGACCACAGGAGCCTACAAATGCTCGCCGCGAATCGTTATCTGTAAAAGTTTATACGGATATAGAATCCTGATAATTGGAGCTAACCAAACAGTGTGATTTTATTATTGTCCGTTTTGCATGAATAGCAAATTAGCGATTCCAGATGGAGCATTTTTGGGTAAAAAATTAAACAAACGGAAGAGAAGGTTTAGGCTGAGGAAGGGGAAATATTGCGAAATTCGTATAGGAAGAGTGAAGAGAAAGAGACAACGACGGATGGAAAAGAAAATCAACATCAACAAGAAGAGAACGACTTGACTGTGAACAACAAAAAAGAATCGTAGTTATTTTAACTTCAATTATCTCGGTTCCTTATATTTCAAACCGATTTTATATGGTTTCAAACCGTTTACTTAGGTACCATATATCTCATTTTTGATAAAGGACWTGAAACAAATAGTGTCAACTGATGAAAAATAGATGATATTATAGTAAACAATTTATCAGTTGTCAAGCTTTTGATATCTTTCAGACGAATCGAACTAATTTTGTTGTCGACAAACAATATTGACGGCTTGAGAGGGCTTCTTTTTCAGCTTTTTCACCTTCATCGTTTATCACAACAATAGTTTCCAATGGTTCGGATGCCTGCCAATGAACTCTTGTGACGCCTTGTAAAGAGAGCAAAAAAGGTTTCTACTAATAAGGCAAATAATTCGAAGGGTGAAAAAACCGATTGAGTGGTAAAAAATAACTGATAATATCGAATTTTGTTCCCCCGCTTTTGTGTTTTTACGCCTAAATCGCTGTGTACTCTTTGCACCGCCGAATCGTTGCGCTTACGAATTACTGTAAACACTCTAATAGCATGACTTCCTAAAATTTGTACTTTGAGGCAAATTATCTCGGCTCTTTCAAAAAATGAGACAAAATTGTCAACGAATCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCGATTTTATATGGTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>CTATTGTTGTGATAAACGATGAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AACCGATTTTATATGGTTTCAAACCGTTTACTTAGGTACCATATATCTCATTTTTGATAAAGGACTTGAAACAAATAGTGTCAACTGATGAAAAATAGATGATATTATAGTAAACAATTTATCAGTTGTCAAGCTTTTGATATCTTTCAGACGAATCGAACTAATTTTGTTGTCGACAAACAATATTGACGGCTTGAGAGGGCTTCTTTTTCAGCTTTTTCACCTTCATCGTTTATCACAACAATAG</canonical_amplicon>
		<polymorphic_amplicon>AACCGATTTTATATGGTTTCAAACCGTTTACTTAGGTACCATATATCTCATTTTTGATAAAGGACWTGAAACAAATAGTGTCAACTGATGAAAAATAGATGATATTATAGTAAACAATTTATCAGTTGTCAAGCTTTTGATATCTTTCAGACGAATCGAACTAATTTTGTTGTCGACAAACAATATTGACGGCTTGAGAGGGCTTCTTTTTCAGCTTTTTCACCTTCATCGTTTATCACAACAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26413</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>254012</contig_pos>
        <strand>+</strand>
        <context>CGCTCACGGT[C/G]RAGGTGAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GATGACGTCGAGATTCTCGTCTCGCCATTTCCGTTGCTCACGCTCACGGT</left_flank>
        <right_flank>CAGGTGAATCGCCTGGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAATTTTCGGAACAAATTTTTCAAAAAATTTATTTTTTCGATTTTTCGAAATTTGACTATTTTCTTCTAATTACATTTTAATTCCTCACCCCAATCGATACAAACTCCTTCTTGGCATCAGCAGGTCCACCACCAGCTCGTCCTTCTGGTCCTTATGCCGGAGCCGCATGATGGCGTCGGAGAGCAAGGAGACACCGGTGATGACGTCGCCGCAGTACTGGAATATTGATTTTATCGATTTTTCAGCAAATAAAAATTTTTTTGAAAATTGAAAATTTAAAAAAAAAATTTTTTTTCGAAAATTTTTAAAAATTCAAACTTTTTCGATTTCTCACCCGAATCGAGTCAATGTGCGGTTTGATGACACCGTCTTTGTGCAAATCCAGAATGTGCACGTACGTCAAGTGCTCCGTATTGGCTCCGAACGATTCGGAGCGAATTCTGGAGATGACGTCGAGATTCTCGTCTCGCCATTTCCGTTGCTCACGCTCACGGTACAGGTGAATCGCCTGGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTTCCCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAAATTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGAGGTCTTCTGAATCCTCACATCATCCCAATGACTCTTCTCGTATCGAAGCCGTTTCATATGCGGTTCCACCTCGGTTAGCAGCGATTTTTCCTCGGCTTCAGTGATGAAGTCTCTGAATTTTTGATATTTGGCTAATTTTCAGTTCTTTAGACTAATTTTAGGCTTTAAAATCGAGAAGCAACTATTTTCAGCACGATTTGACCTCCAAAATGCTGAAAATCCTACTTAAAAAAGACTAAAAAACATTTTTCCAGCGG</canonical>
            <polymorphic>AAAAAATTTTCGGAACAAATTTTTCAAAAAATTTATTTTTTCGATTTTTCGAAATTTGACTATTTTCTTCTAATTACATTTTAATTCCTCACCCCAATCGATACAAACTCCTTCTTGGCATCAGCAGGTCCACCACCAGCTCGTCCTTCTGGTCCTTATGCCGGAGCCGCATGATGGCGTCGGAGAGCAAGGAGACACCGGTGATGACGTCGCCGCAGTACTGGAATATTGATTTTATCGATTTTTCAGCAAATAAAAATTTTTTTGAAAATTGAAAATTTAAAAAAAAAATTTTTTTTCGAAAATTTTTAAAAATTCAAACTTTTTCGATTTCTCACCCGAATCGAGTCAATGTGCGGTTTGATGACACCGTCTTTGTGCAAATCCAGAATGTGCACGTACGTCAAGTGCTCCGTATTGGCTCCGAACGATTCGGAGCGAATTCTGGAGATGACGTCGAGATTCTCGTCTCGCCATTTCCGTTGCTCACGCTCACGGTSCAGGTGAATCGCCTGGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTTCCCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAAATTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGAGGTCTTCTGAATCCTCACATCATCCCAATGACTCTTCTCGTATCGAAGCCGTTTCATATGCGGTTCCACCTCGGTTAGCAGCGATTTTTCCTCGGCTTCAGTGATGAAGTCTCTGAATTTTTGATATTTGGCTAATTTTCAGTTCTTTAGACTAATTTTAGGCTTTAAAATCGAGAAGCAACTATTTTCAGCACGATTTGACCTCCAAAATGCTGAAAATCCTACTTAAAAAAGACTAAAAAACATTTTTCCAGCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 219 181 99</canonical_bands>
                <polymorphic_bands>600 219 181</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTACGTCAAGTGCTCCGTAT</pcr_primer_p1>
		<pcr_primer_p2>GACGTCTTCTGAAAAATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GTACGTCAAGTGCTCCGTATTGGCTCCGAACGATTCGGAGCGAATTCTGGAGATGACGTCGAGATTCTCGTCTCGCCATTTCCGTTGCTCACGCTCACGGTACAGGTGAATCGCCTGGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTC</canonical_amplicon>
		<polymorphic_amplicon>GTACGTCAAGTGCTCCGTATTGGCTCCGAACGATTCGGAGCGAATTCTGGAGATGACGTCGAGATTCTCGTCTCGCCATTTCCGTTGCTCACGCTCACGGTSCAGGTGAATCGCCTGGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26414</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>254013</contig_pos>
        <strand>+</strand>
        <context>GCTCACGGTS[A/G]AGGTGAATCG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGACGTCGAGATTCTCGTCTCGCCATTTCCGTTGCTCACGCTCACGGTA</left_flank>
        <right_flank>AGGTGAATCGCCTGGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATTTTCGGAACAAATTTTTCAAAAAATTTATTTTTTCGATTTTTCGAAATTTGACTATTTTCTTCTAATTACATTTTAATTCCTCACCCCAATCGATACAAACTCCTTCTTGGCATCAGCAGGTCCACCACCAGCTCGTCCTTCTGGTCCTTATGCCGGAGCCGCATGATGGCGTCGGAGAGCAAGGAGACACCGGTGATGACGTCGCCGCAGTACTGGAATATTGATTTTATCGATTTTTCAGCAAATAAAAATTTTTTTGAAAATTGAAAATTTAAAAAAAAAATTTTTTTTCGAAAATTTTTAAAAATTCAAACTTTTTCGATTTCTCACCCGAATCGAGTCAATGTGCGGTTTGATGACACCGTCTTTGTGCAAATCCAGAATGTGCACGTACGTCAAGTGCTCCGTATTGGCTCCGAACGATTCGGAGCGAATTCTGGAGATGACGTCGAGATTCTCGTCTCGCCATTTCCGTTGCTCACGCTCACGGTACAGGTGAATCGCCTGGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTTCCCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAAATTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGAGGTCTTCTGAATCCTCACATCATCCCAATGACTCTTCTCGTATCGAAGCCGTTTCATATGCGGTTCCACCTCGGTTAGCAGCGATTTTTCCTCGGCTTCAGTGATGAAGTCTCTGAATTTTTGATATTTGGCTAATTTTCAGTTCTTTAGACTAATTTTAGGCTTTAAAATCGAGAAGCAACTATTTTCAGCACGATTTGACCTCCAAAATGCTGAAAATCCTACTTAAAAAAGACTAAAAAACATTTTTCCAGCGGC</canonical>
            <polymorphic>AAAAATTTTCGGAACAAATTTTTCAAAAAATTTATTTTTTCGATTTTTCGAAATTTGACTATTTTCTTCTAATTACATTTTAATTCCTCACCCCAATCGATACAAACTCCTTCTTGGCATCAGCAGGTCCACCACCAGCTCGTCCTTCTGGTCCTTATGCCGGAGCCGCATGATGGCGTCGGAGAGCAAGGAGACACCGGTGATGACGTCGCCGCAGTACTGGAATATTGATTTTATCGATTTTTCAGCAAATAAAAATTTTTTTGAAAATTGAAAATTTAAAAAAAAAATTTTTTTTCGAAAATTTTTAAAAATTCAAACTTTTTCGATTTCTCACCCGAATCGAGTCAATGTGCGGTTTGATGACACCGTCTTTGTGCAAATCCAGAATGTGCACGTACGTCAAGTGCTCCGTATTGGCTCCGAACGATTCGGAGCGAATTCTGGAGATGACGTCGAGATTCTCGTCTCGCCATTTCCGTTGCTCACGCTCACGGTARAGGTGAATCGCCTGGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTTCCCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAAATTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGAGGTCTTCTGAATCCTCACATCATCCCAATGACTCTTCTCGTATCGAAGCCGTTTCATATGCGGTTCCACCTCGGTTAGCAGCGATTTTTCCTCGGCTTCAGTGATGAAGTCTCTGAATTTTTGATATTTGGCTAATTTTCAGTTCTTTAGACTAATTTTAGGCTTTAAAATCGAGAAGCAACTATTTTCAGCACGATTTGACCTCCAAAATGCTGAAAATCCTACTTAAAAAAGACTAAAAAACATTTTTCCAGCGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 218 181 99</canonical_bands>
                <polymorphic_bands>601 218 181</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTACGTCAAGTGCTCCGTAT</pcr_primer_p1>
		<pcr_primer_p2>GACGTCTTCTGAAAAATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GTACGTCAAGTGCTCCGTATTGGCTCCGAACGATTCGGAGCGAATTCTGGAGATGACGTCGAGATTCTCGTCTCGCCATTTCCGTTGCTCACGCTCACGGTACAGGTGAATCGCCTGGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTC</canonical_amplicon>
		<polymorphic_amplicon>GTACGTCAAGTGCTCCGTATTGGCTCCGAACGATTCGGAGCGAATTCTGGAGATGACGTCGAGATTCTCGTCTCGCCATTTCCGTTGCTCACGCTCACGGTARAGGTGAATCGCCTGGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26415</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>254052</contig_pos>
        <strand>+</strand>
        <context>ACGTCAATTT[A/G]GAATTTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCTCACGGTACAGGTGAATCGCCTGGAAATTTTTAGAAGACGTCAATTT</left_flank>
        <right_flank>GAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGATTTTTCGAAATTTGACTATTTTCTTCTAATTACATTTTAATTCCTCACCCCAATCGATACAAACTCCTTCTTGGCATCAGCAGGTCCACCACCAGCTCGTCCTTCTGGTCCTTATGCCGGAGCCGCATGATGGCGTCGGAGAGCAAGGAGACACCGGTGATGACGTCGCCGCAGTACTGGAATATTGATTTTATCGATTTTTCAGCAAATAAAAATTTTTTTGAAAATTGAAAATTTAAAAAAAAAATTTTTTTTCGAAAATTTTTAAAAATTCAAACTTTTTCGATTTCTCACCCGAATCGAGTCAATGTGCGGTTTGATGACACCGTCTTTGTGCAAATCCAGAATGTGCACGTACGTCAAGTGCTCCGTATTGGCTCCGAACGATTCGGAGCGAATTCTGGAGATGACGTCGAGATTCTCGTCTCGCCATTTCCGTTGCTCACGCTCACGGTACAGGTGAATCGCCTGGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTTCCCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAAATTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGAGGTCTTCTGAATCCTCACATCATCCCAATGACTCTTCTCGTATCGAAGCCGTTTCATATGCGGTTCCACCTCGGTTAGCAGCGATTTTTCCTCGGCTTCAGTGATGAAGTCTCTGAATTTTTGATATTTGGCTAATTTTCAGTTCTTTAGACTAATTTTAGGCTTTAAAATCGAGAAGCAACTATTTTCAGCACGATTTGACCTCCAAAATGCTGAAAATCCTACTTAAAAAAGACTAAAAAACATTTTTCCAGCGGCGGGAGTCGAACCCACGACTTCAACCCAGTAGGCAGCCGC</canonical>
            <polymorphic>TCGATTTTTCGAAATTTGACTATTTTCTTCTAATTACATTTTAATTCCTCACCCCAATCGATACAAACTCCTTCTTGGCATCAGCAGGTCCACCACCAGCTCGTCCTTCTGGTCCTTATGCCGGAGCCGCATGATGGCGTCGGAGAGCAAGGAGACACCGGTGATGACGTCGCCGCAGTACTGGAATATTGATTTTATCGATTTTTCAGCAAATAAAAATTTTTTTGAAAATTGAAAATTTAAAAAAAAAATTTTTTTTCGAAAATTTTTAAAAATTCAAACTTTTTCGATTTCTCACCCGAATCGAGTCAATGTGCGGTTTGATGACACCGTCTTTGTGCAAATCCAGAATGTGCACGTACGTCAAGTGCTCCGTATTGGCTCCGAACGATTCGGAGCGAATTCTGGAGATGACGTCGAGATTCTCGTCTCGCCATTTCCGTTGCTCACGCTCACGGTACAGGTGAATCGCCTGGAAATTTTTAGAAGACGTCAATTTRGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTTCCCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAAATTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGAGGTCTTCTGAATCCTCACATCATCCCAATGACTCTTCTCGTATCGAAGCCGTTTCATATGCGGTTCCACCTCGGTTAGCAGCGATTTTTCCTCGGCTTCAGTGATGAAGTCTCTGAATTTTTGATATTTGGCTAATTTTCAGTTCTTTAGACTAATTTTAGGCTTTAAAATCGAGAAGCAACTATTTTCAGCACGATTTGACCTCCAAAATGCTGAAAATCCTACTTAAAAAAGACTAAAAAACATTTTTCCAGCGGCGGGAGTCGAACCCACGACTTCAACCCAGTAGGCAGCCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACGTCAAGTGCTCCGTAT</pcr_primer_p1>
		<pcr_primer_p2>GACGTCTTCTGAAAAATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GTACGTCAAGTGCTCCGTATTGGCTCCGAACGATTCGGAGCGAATTCTGGAGATGACGTCGAGATTCTCGTCTCGCCATTTCCGTTGCTCACGCTCACGGTACAGGTGAATCGCCTGGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTC</canonical_amplicon>
		<polymorphic_amplicon>GTACGTCAAGTGCTCCGTATTGGCTCCGAACGATTCGGAGCGAATTCTGGAGATGACGTCGAGATTCTCGTCTCGCCATTTCCGTTGCTCACGCTCACGGTACAGGTGAATCGCCTGGAAATTTTTAGAAGACGTCAATTTRGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26416</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>254165</contig_pos>
        <strand>+</strand>
        <context>TTCTAAATTW[A/T]CCTTCACATC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTT</left_flank>
        <right_flank>CCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTATGCCGGAGCCGCATGATGGCGTCGGAGAGCAAGGAGACACCGGTGATGACGTCGCCGCAGTACTGGAATATTGATTTTATCGATTTTTCAGCAAATAAAAATTTTTTTGAAAATTGAAAATTTAAAAAAAAAATTTTTTTTCGAAAATTTTTAAAAATTCAAACTTTTTCGATTTCTCACCCGAATCGAGTCAATGTGCGGTTTGATGACACCGTCTTTGTGCAAATCCAGAATGTGCACGTACGTCAAGTGCTCCGTATTGGCTCCGAACGATTCGGAGCGAATTCTGGAGATGACGTCGAGATTCTCGTCTCGCCATTTCCGTTGCTCACGCTCACGGTACAGGTGAATCGCCTGGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTTCCCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAAATTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGAGGTCTTCTGAATCCTCACATCATCCCAATGACTCTTCTCGTATCGAAGCCGTTTCATATGCGGTTCCACCTCGGTTAGCAGCGATTTTTCCTCGGCTTCAGTGATGAAGTCTCTGAATTTTTGATATTTGGCTAATTTTCAGTTCTTTAGACTAATTTTAGGCTTTAAAATCGAGAAGCAACTATTTTCAGCACGATTTGACCTCCAAAATGCTGAAAATCCTACTTAAAAAAGACTAAAAAACATTTTTCCAGCGGCGGGAGTCGAACCCACGACTTCAACCCAGTAGGCAGCCGCTTTGCCGGCTGCGCCAAATCTATCAAACTAAGGAAAGCTCACTTTTTCACATAACAAGCCTGCACGATTTCCTCCGCGAGCGCCGCCGGCCACTTTTGAATATTGTGGAACAG</canonical>
            <polymorphic>CCTTATGCCGGAGCCGCATGATGGCGTCGGAGAGCAAGGAGACACCGGTGATGACGTCGCCGCAGTACTGGAATATTGATTTTATCGATTTTTCAGCAAATAAAAATTTTTTTGAAAATTGAAAATTTAAAAAAAAAATTTTTTTTCGAAAATTTTTAAAAATTCAAACTTTTTCGATTTCTCACCCGAATCGAGTCAATGTGCGGTTTGATGACACCGTCTTTGTGCAAATCCAGAATGTGCACGTACGTCAAGTGCTCCGTATTGGCTCCGAACGATTCGGAGCGAATTCTGGAGATGACGTCGAGATTCTCGTCTCGCCATTTCCGTTGCTCACGCTCACGGTACAGGTGAATCGCCTGGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTTWCCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAAATTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGAGGTCTTCTGAATCCTCACATCATCCCAATGACTCTTCTCGTATCGAAGCCGTTTCATATGCGGTTCCACCTCGGTTAGCAGCGATTTTTCCTCGGCTTCAGTGATGAAGTCTCTGAATTTTTGATATTTGGCTAATTTTCAGTTCTTTAGACTAATTTTAGGCTTTAAAATCGAGAAGCAACTATTTTCAGCACGATTTGACCTCCAAAATGCTGAAAATCCTACTTAAAAAAGACTAAAAAACATTTTTCCAGCGGCGGGAGTCGAACCCACGACTTCAACCCAGTAGGCAGCCGCTTTGCCGGCTGCGCCAAATCTATCAAACTAAGGAAAGCTCACTTTTTCACATAACAAGCCTGCACGATTTCCTCCGCGAGCGCCGCCGGCCACTTTTGAATATTGTGGAACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAATTTTTAGAAGACGTCAAT</pcr_primer_p1>
		<pcr_primer_p2>ATGATGTGAGGATTCAGAAGAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTTCCCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAAATTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGAGGTCTTCTGAATCCTCACATCAT</canonical_amplicon>
		<polymorphic_amplicon>GGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTTWCCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAAATTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGAGGTCTTCTGAATCCTCACATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26417</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>254198</contig_pos>
        <strand>+</strand>
        <context>GAATTCGAAA[A/T]TTTTTGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCACGTCTTCTAAATTTCCCTTCACATCATCCTGACGTCAGAATTCGAAA</left_flank>
        <right_flank>TTTTTGAAAAAAAAAATTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAAGGAGACACCGGTGATGACGTCGCCGCAGTACTGGAATATTGATTTTATCGATTTTTCAGCAAATAAAAATTTTTTTGAAAATTGAAAATTTAAAAAAAAAATTTTTTTTCGAAAATTTTTAAAAATTCAAACTTTTTCGATTTCTCACCCGAATCGAGTCAATGTGCGGTTTGATGACACCGTCTTTGTGCAAATCCAGAATGTGCACGTACGTCAAGTGCTCCGTATTGGCTCCGAACGATTCGGAGCGAATTCTGGAGATGACGTCGAGATTCTCGTCTCGCCATTTCCGTTGCTCACGCTCACGGTACAGGTGAATCGCCTGGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTTCCCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAAATTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGAGGTCTTCTGAATCCTCACATCATCCCAATGACTCTTCTCGTATCGAAGCCGTTTCATATGCGGTTCCACCTCGGTTAGCAGCGATTTTTCCTCGGCTTCAGTGATGAAGTCTCTGAATTTTTGATATTTGGCTAATTTTCAGTTCTTTAGACTAATTTTAGGCTTTAAAATCGAGAAGCAACTATTTTCAGCACGATTTGACCTCCAAAATGCTGAAAATCCTACTTAAAAAAGACTAAAAAACATTTTTCCAGCGGCGGGAGTCGAACCCACGACTTCAACCCAGTAGGCAGCCGCTTTGCCGGCTGCGCCAAATCTATCAAACTAAGGAAAGCTCACTTTTTCACATAACAAGCCTGCACGATTTCCTCCGCGAGCGCCGCCGGCCACTTTTGAATATTGTGGAACAGAATTAGGCTTTTTTGAAGCGCCCGTCGCGAAAT</canonical>
            <polymorphic>GCAAGGAGACACCGGTGATGACGTCGCCGCAGTACTGGAATATTGATTTTATCGATTTTTCAGCAAATAAAAATTTTTTTGAAAATTGAAAATTTAAAAAAAAAATTTTTTTTCGAAAATTTTTAAAAATTCAAACTTTTTCGATTTCTCACCCGAATCGAGTCAATGTGCGGTTTGATGACACCGTCTTTGTGCAAATCCAGAATGTGCACGTACGTCAAGTGCTCCGTATTGGCTCCGAACGATTCGGAGCGAATTCTGGAGATGACGTCGAGATTCTCGTCTCGCCATTTCCGTTGCTCACGCTCACGGTACAGGTGAATCGCCTGGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTTCCCTTCACATCATCCTGACGTCAGAATTCGAAAWTTTTTGAAAAAAAAAATTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGAGGTCTTCTGAATCCTCACATCATCCCAATGACTCTTCTCGTATCGAAGCCGTTTCATATGCGGTTCCACCTCGGTTAGCAGCGATTTTTCCTCGGCTTCAGTGATGAAGTCTCTGAATTTTTGATATTTGGCTAATTTTCAGTTCTTTAGACTAATTTTAGGCTTTAAAATCGAGAAGCAACTATTTTCAGCACGATTTGACCTCCAAAATGCTGAAAATCCTACTTAAAAAAGACTAAAAAACATTTTTCCAGCGGCGGGAGTCGAACCCACGACTTCAACCCAGTAGGCAGCCGCTTTGCCGGCTGCGCCAAATCTATCAAACTAAGGAAAGCTCACTTTTTCACATAACAAGCCTGCACGATTTCCTCCGCGAGCGCCGCCGGCCACTTTTGAATATTGTGGAACAGAATTAGGCTTTTTTGAAGCGCCCGTCGCGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAATTTTTAGAAGACGTCAAT</pcr_primer_p1>
		<pcr_primer_p2>ATGATGTGAGGATTCAGAAGAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTTCCCTTCACATCATCCTGACGTCAGAATTCGAAACTTTTTGAAAAAAAAAATTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGAGGTCTTCTGAATCCTCACATCAT</canonical_amplicon>
		<polymorphic_amplicon>GGAAATTTTTAGAAGACGTCAATTTAGAATTTTTTTCGAAAAAATTTGAAAAATCCAAAAAATTTTTTTTGAAAATTTTGAAAAATTCGAAAAAACTTTTTTTCAAATTTTTCAGAAGACGTCACGTCTTCTAAATTTCCCTTCACATCATCCTGACGTCAGAATTCGAAAWTTTTTGAAAAAAAAAATTTTTTTGAAGTTTTTTTTCCAAATTTTTCAGATGACGTGAGGTCTTCTGAATCCTCACATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26418</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>300037</contig_pos>
        <strand>+</strand>
        <context>CGTTTCCCAA[A/G]CCATGTAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACTAATTAGCCATCTAGAATCGCTCAATTCTTCCTCGATCGTTTCCCAA</left_flank>
        <right_flank>CCATGTAATCACTCGCTTCATGGTGACCTTGAACTCTTTAGCGAACATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGTCAGTAGACATCTCCGTATCAAACTATGTCAAAGTAGCTCACCACGCTTAAGCGGAGCAGAGGGGGAAGGTGAGAAGAGGACAAGCGAGCAGACACCTGTGAATCCAAGCAAATTGACCTTACTTTTGTACCGGACACGGACCAGACCGGTATGGATATTATAAACAAATCGAGAGACGGGAATGTAATTGAATATTGTGGTGGTGGTTATACTGTAGAATCCATACCTTCATAAATCCTTTCGAGAGATGAGCTTCATGTGACTAAGTGACCATCGGAAATCCGAAAATCAATAACTCCAAAACTCAAGAGCCCAAAAATTTAGAAACTTTGGAAACTCAGAAACCGGGAAAGTAGGCGATTCAAATTTTTTTGTTTTAGTTTCTTTTTCTATCTGGAAGAATAATAGCCCGATTGAAAATTTATTCAAGTAAGTTACTGAAAATACTAATTAGCCATCTAGAATCGCTCAATTCTTCCTCGATCGTTTCCCAAACCATGTAATCACTCGCTTCATGGTGACCTTGAACTCTTTAGCGAACATGAGCTTCTCCTGAAGAGTCACTGGAAACCCTGTCTCAAATCTAGCATTTAGAATTGCAGTTTGTAAGCAGTTAAAAACACGTCGTTTGAATTGGCAAGACGACTTTTTGGATTTTATGGAGAATCCGCAACGGCAGAGTATTGATTCAGGAGGTGGAACAGGAGGAGCCGATGGAGCCATCCCAAGAACAGCCAGGATTAGAAGAGGATCTTTAAAGATTGGCTTTAGAAAGTTCTAGAAATAGTGACTCACTTGGAATTGAAATATGTAGATTTGTTGGGGATTGTGGAATGATTCTAGGACTTGCTGAACGTTTTTGAATATTTTTAAGACATGTAACTTTGAGCTCAATTATCTCGGTTTTTGTGAGAGGTAACAAAATTAAGTCAACTAATGAAATATTAGTAATATTGTGATAAACATCTTATCAGTTGACAACTTTTTGATATTTG</canonical>
            <polymorphic>CAAGTCAGTAGACATCTCCGTATCAAACTATGTCAAAGTAGCTCACCACGCTTAAGCGGAGCAGAGGGGGAAGGTGAGAAGAGGACAAGCGAGCAGACACCTGTGAATCCAAGCAAATTGACCTTACTTTTGTACCGGACACGGACCAGACCGGTATGGATATTATAAACAAATCGAGAGACGGGAATGTAATTGAATATTGTGGTGGTGGTTATACTGTAGAATCCATACCTTCATAAATCCTTTCGAGAGATGAGCTTCATGTGACTAAGTGACCATCGGAAATCCGAAAATCAATAACTCCAAAACTCAAGAGCCCAAAAATTTAGAAACTTTGGAAACTCAGAAACCGGGAAAGTAGGCGATTCAAATTTTTTTGTTTTAGTTTCTTTTTCTATCTGGAAGAATAATAGCCCGATTGAAAATTTATTCAAGTAAGTTACTGAAAATACTAATTAGCCATCTAGAATCGCTCAATTCTTCCTCGATCGTTTCCCAARCCATGTAATCACTCGCTTCATGGTGACCTTGAACTCTTTAGCGAACATGAGCTTCTCCTGAAGAGTCACTGGAAACCCTGTCTCAAATCTAGCATTTAGAATTGCAGTTTGTAAGCAGTTAAAAACACGTCGTTTGAATTGGCAAGACGACTTTTTGGATTTTATGGAGAATCCGCAACGGCAGAGTATTGATTCAGGAGGTGGAACAGGAGGAGCCGATGGAGCCATCCCAAGAACAGCCAGGATTAGAAGAGGATCTTTAAAGATTGGCTTTAGAAAGTTCTAGAAATAGTGACTCACTTGGAATTGAAATATGTAGATTTGTTGGGGATTGTGGAATGATTCTAGGACTTGCTGAACGTTTTTGAATATTTTTAAGACATGTAACTTTGAGCTCAATTATCTCGGTTTTTGTGAGAGGTAACAAAATTAAGTCAACTAATGAAATATTAGTAATATTGTGATAAACATCTTATCAGTTGACAACTTTTTGATATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAGAAACTTTGGAAACTCAGA</pcr_primer_p1>
		<pcr_primer_p2>CCAGTGACTCTTCAGGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTAGAAACTTTGGAAACTCAGAAACCGGGAAAGTAGGCGATTCAAATTTTTTTGTTTTAGTTTCTTTTTCTATCTGGAAGAATAATAGCCCGATTGAAAATTTATTCAAGTAAGTTACTGAAAATACTAATTAGCCATCTAGAATCGCTCAATTCTTCCTCGATCGTTTCCCAAACCATGTAATCACTCGCTTCATGGTGACCTTGAACTCTTTAGCGAACATGAGCTTCTCCTGAAGAGTCACTGG</canonical_amplicon>
		<polymorphic_amplicon>TTTAGAAACTTTGGAAACTCAGAAACCGGGAAAGTAGGCGATTCAAATTTTTTTGTTTTAGTTTCTTTTTCTATCTGGAAGAATAATAGCCCGATTGAAAATTTATTCAAGTAAGTTACTGAAAATACTAATTAGCCATCTAGAATCGCTCAATTCTTCCTCGATCGTTTCCCAARCCATGTAATCACTCGCTTCATGGTGACCTTGAACTCTTTAGCGAACATGAGCTTCTCCTGAAGAGTCACTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26419</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>300051</contig_pos>
        <strand>+</strand>
        <context>TGTAATCACT[C/T]GCTTCATGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAGAATCGCTCAATTCTTCCTCGATCGTTTCCCAAACCATGTAATCACT</left_flank>
        <right_flank>GCTTCATGGTGACCTTGAACTCTTTAGCGAACATGAGCTTCTCCTGAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCCGTATCAAACTATGTCAAAGTAGCTCACCACGCTTAAGCGGAGCAGAGGGGGAAGGTGAGAAGAGGACAAGCGAGCAGACACCTGTGAATCCAAGCAAATTGACCTTACTTTTGTACCGGACACGGACCAGACCGGTATGGATATTATAAACAAATCGAGAGACGGGAATGTAATTGAATATTGTGGTGGTGGTTATACTGTAGAATCCATACCTTCATAAATCCTTTCGAGAGATGAGCTTCATGTGACTAAGTGACCATCGGAAATCCGAAAATCAATAACTCCAAAACTCAAGAGCCCAAAAATTTAGAAACTTTGGAAACTCAGAAACCGGGAAAGTAGGCGATTCAAATTTTTTTGTTTTAGTTTCTTTTTCTATCTGGAAGAATAATAGCCCGATTGAAAATTTATTCAAGTAAGTTACTGAAAATACTAATTAGCCATCTAGAATCGCTCAATTCTTCCTCGATCGTTTCCCAAACCATGTAATCACTCGCTTCATGGTGACCTTGAACTCTTTAGCGAACATGAGCTTCTCCTGAAGAGTCACTGGAAACCCTGTCTCAAATCTAGCATTTAGAATTGCAGTTTGTAAGCAGTTAAAAACACGTCGTTTGAATTGGCAAGACGACTTTTTGGATTTTATGGAGAATCCGCAACGGCAGAGTATTGATTCAGGAGGTGGAACAGGAGGAGCCGATGGAGCCATCCCAAGAACAGCCAGGATTAGAAGAGGATCTTTAAAGATTGGCTTTAGAAAGTTCTAGAAATAGTGACTCACTTGGAATTGAAATATGTAGATTTGTTGGGGATTGTGGAATGATTCTAGGACTTGCTGAACGTTTTTGAATATTTTTAAGACATGTAACTTTGAGCTCAATTATCTCGGTTTTTGTGAGAGGTAACAAAATTAAGTCAACTAATGAAATATTAGTAATATTGTGATAAACATCTTATCAGTTGACAACTTTTTGATATTTGTTATAGGAACCGAG</canonical>
            <polymorphic>TCTCCGTATCAAACTATGTCAAAGTAGCTCACCACGCTTAAGCGGAGCAGAGGGGGAAGGTGAGAAGAGGACAAGCGAGCAGACACCTGTGAATCCAAGCAAATTGACCTTACTTTTGTACCGGACACGGACCAGACCGGTATGGATATTATAAACAAATCGAGAGACGGGAATGTAATTGAATATTGTGGTGGTGGTTATACTGTAGAATCCATACCTTCATAAATCCTTTCGAGAGATGAGCTTCATGTGACTAAGTGACCATCGGAAATCCGAAAATCAATAACTCCAAAACTCAAGAGCCCAAAAATTTAGAAACTTTGGAAACTCAGAAACCGGGAAAGTAGGCGATTCAAATTTTTTTGTTTTAGTTTCTTTTTCTATCTGGAAGAATAATAGCCCGATTGAAAATTTATTCAAGTAAGTTACTGAAAATACTAATTAGCCATCTAGAATCGCTCAATTCTTCCTCGATCGTTTCCCAAACCATGTAATCACTYGCTTCATGGTGACCTTGAACTCTTTAGCGAACATGAGCTTCTCCTGAAGAGTCACTGGAAACCCTGTCTCAAATCTAGCATTTAGAATTGCAGTTTGTAAGCAGTTAAAAACACGTCGTTTGAATTGGCAAGACGACTTTTTGGATTTTATGGAGAATCCGCAACGGCAGAGTATTGATTCAGGAGGTGGAACAGGAGGAGCCGATGGAGCCATCCCAAGAACAGCCAGGATTAGAAGAGGATCTTTAAAGATTGGCTTTAGAAAGTTCTAGAAATAGTGACTCACTTGGAATTGAAATATGTAGATTTGTTGGGGATTGTGGAATGATTCTAGGACTTGCTGAACGTTTTTGAATATTTTTAAGACATGTAACTTTGAGCTCAATTATCTCGGTTTTTGTGAGAGGTAACAAAATTAAGTCAACTAATGAAATATTAGTAATATTGTGATAAACATCTTATCAGTTGACAACTTTTTGATATTTGTTATAGGAACCGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAGAAACTTTGGAAACTCAGA</pcr_primer_p1>
		<pcr_primer_p2>CCAGTGACTCTTCAGGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTAGAAACTTTGGAAACTCAGAAACCGGGAAAGTAGGCGATTCAAATTTTTTTGTTTTAGTTTCTTTTTCTATCTGGAAGAATAATAGCCCGATTGAAAATTTATTCAAGTAAGTTACTGAAAATACTAATTAGCCATCTAGAATCGCTCAATTCTTCCTCGATCGTTTCCCAAACCATGTAATCACTCGCTTCATGGTGACCTTGAACTCTTTAGCGAACATGAGCTTCTCCTGAAGAGTCACTGG</canonical_amplicon>
		<polymorphic_amplicon>TTTAGAAACTTTGGAAACTCAGAAACCGGGAAAGTAGGCGATTCAAATTTTTTTGTTTTAGTTTCTTTTTCTATCTGGAAGAATAATAGCCCGATTGAAAATTTATTCAAGTAAGTTACTGAAAATACTAATTAGCCATCTAGAATCGCTCAATTCTTCCTCGATCGTTTCCCAAACCATGTAATCACTYGCTTCATGGTGACCTTGAACTCTTTAGCGAACATGAGCTTCTCCTGAAGAGTCACTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26420</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>300065</contig_pos>
        <strand>+</strand>
        <context>TCATGGTGAC[C/T]TTGAACTCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTTCCTCGATCGTTTCCCAAACCATGTAATCACTCGCTTCATGGTGAC</left_flank>
        <right_flank>TTGAACTCTTTAGCGAACATGAGCTTCTCCTGAAGAGTCACTGGAAACCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGTCAAAGTAGCTCACCACGCTTAAGCGGAGCAGAGGGGGAAGGTGAGAAGAGGACAAGCGAGCAGACACCTGTGAATCCAAGCAAATTGACCTTACTTTTGTACCGGACACGGACCAGACCGGTATGGATATTATAAACAAATCGAGAGACGGGAATGTAATTGAATATTGTGGTGGTGGTTATACTGTAGAATCCATACCTTCATAAATCCTTTCGAGAGATGAGCTTCATGTGACTAAGTGACCATCGGAAATCCGAAAATCAATAACTCCAAAACTCAAGAGCCCAAAAATTTAGAAACTTTGGAAACTCAGAAACCGGGAAAGTAGGCGATTCAAATTTTTTTGTTTTAGTTTCTTTTTCTATCTGGAAGAATAATAGCCCGATTGAAAATTTATTCAAGTAAGTTACTGAAAATACTAATTAGCCATCTAGAATCGCTCAATTCTTCCTCGATCGTTTCCCAAACCATGTAATCACTCGCTTCATGGTGACCTTGAACTCTTTAGCGAACATGAGCTTCTCCTGAAGAGTCACTGGAAACCCTGTCTCAAATCTAGCATTTAGAATTGCAGTTTGTAAGCAGTTAAAAACACGTCGTTTGAATTGGCAAGACGACTTTTTGGATTTTATGGAGAATCCGCAACGGCAGAGTATTGATTCAGGAGGTGGAACAGGAGGAGCCGATGGAGCCATCCCAAGAACAGCCAGGATTAGAAGAGGATCTTTAAAGATTGGCTTTAGAAAGTTCTAGAAATAGTGACTCACTTGGAATTGAAATATGTAGATTTGTTGGGGATTGTGGAATGATTCTAGGACTTGCTGAACGTTTTTGAATATTTTTAAGACATGTAACTTTGAGCTCAATTATCTCGGTTTTTGTGAGAGGTAACAAAATTAAGTCAACTAATGAAATATTAGTAATATTGTGATAAACATCTTATCAGTTGACAACTTTTTGATATTTGTTATAGGAACCGAGATAAATTGGCTCCA</canonical>
            <polymorphic>TATGTCAAAGTAGCTCACCACGCTTAAGCGGAGCAGAGGGGGAAGGTGAGAAGAGGACAAGCGAGCAGACACCTGTGAATCCAAGCAAATTGACCTTACTTTTGTACCGGACACGGACCAGACCGGTATGGATATTATAAACAAATCGAGAGACGGGAATGTAATTGAATATTGTGGTGGTGGTTATACTGTAGAATCCATACCTTCATAAATCCTTTCGAGAGATGAGCTTCATGTGACTAAGTGACCATCGGAAATCCGAAAATCAATAACTCCAAAACTCAAGAGCCCAAAAATTTAGAAACTTTGGAAACTCAGAAACCGGGAAAGTAGGCGATTCAAATTTTTTTGTTTTAGTTTCTTTTTCTATCTGGAAGAATAATAGCCCGATTGAAAATTTATTCAAGTAAGTTACTGAAAATACTAATTAGCCATCTAGAATCGCTCAATTCTTCCTCGATCGTTTCCCAAACCATGTAATCACTCGCTTCATGGTGACYTTGAACTCTTTAGCGAACATGAGCTTCTCCTGAAGAGTCACTGGAAACCCTGTCTCAAATCTAGCATTTAGAATTGCAGTTTGTAAGCAGTTAAAAACACGTCGTTTGAATTGGCAAGACGACTTTTTGGATTTTATGGAGAATCCGCAACGGCAGAGTATTGATTCAGGAGGTGGAACAGGAGGAGCCGATGGAGCCATCCCAAGAACAGCCAGGATTAGAAGAGGATCTTTAAAGATTGGCTTTAGAAAGTTCTAGAAATAGTGACTCACTTGGAATTGAAATATGTAGATTTGTTGGGGATTGTGGAATGATTCTAGGACTTGCTGAACGTTTTTGAATATTTTTAAGACATGTAACTTTGAGCTCAATTATCTCGGTTTTTGTGAGAGGTAACAAAATTAAGTCAACTAATGAAATATTAGTAATATTGTGATAAACATCTTATCAGTTGACAACTTTTTGATATTTGTTATAGGAACCGAGATAAATTGGCTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGTNACC</site>
                <isoschizomers>
                    <enzyme>BstEII</enzyme>
                    <enzyme>BstPI</enzyme>
                    <enzyme>Eco91I</enzyme>
                    <enzyme>EcoO65I</enzyme>
                    <enzyme>PspEI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGAAACTTTGGAAACTCAGAAA</pcr_primer_p1>
		<pcr_primer_p2>AGGGTTTCCAGTGACTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TAGAAACTTTGGAAACTCAGAAACCGGGAAAGTAGGCGATTCAAATTTTTTTGTTTTAGTTTCTTTTTCTATCTGGAAGAATAATAGCCCGATTGAAAATTTATTCAAGTAAGTTACTGAAAATACTAATTAGCCATCTAGAATCGCTCAATTCTTCCTCGATCGTTTCCCAAACCATGTAATCACTCGCTTCATGGTGACCTTGAACTCTTTAGCGAACATGAGCTTCTCCTGAAGAGTCACTGGAAACCCT</canonical_amplicon>
		<polymorphic_amplicon>TAGAAACTTTGGAAACTCAGAAACCGGGAAAGTAGGCGATTCAAATTTTTTTGTTTTAGTTTCTTTTTCTATCTGGAAGAATAATAGCCCGATTGAAAATTTATTCAAGTAAGTTACTGAAAATACTAATTAGCCATCTAGAATCGCTCAATTCTTCCTCGATCGTTTCCCAAACCATGTAATCACTCGCTTCATGGTGACYTTGAACTCTTTAGCGAACATGAGCTTCTCCTGAAGAGTCACTGGAAACCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26421</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>324740</contig_pos>
        <strand></strand>
        <context>tcaatttagg[T/C]caatttttag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACAAAATGACCATTTACAGAGATTTATGGACCAGTTTAAGTCAATTTAGG</left_flank>
        <right_flank>CAATTTTTAGTGATTTTTAGACTAATTCTAGGCTAAAATAGGCCAATTTT</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCTGTCCAACGTAGACCGAGGTGTTATCCGCTGACGTCTGATTATAGATCTCATCGAACGTCTTCTCATAGTGTCTGCGCTCTCCTCGTTCCCCACGATCTCTTCTCTCTCCACCTCCTTCCTCCTCCGGCTTCCGAGTCGCCCAATTTGTCCGGATGGTCCGTCTACCCAACCATTGTCCATTCATCTGCTCGATGGCTCTCTCGGCATCCTCTCTTCTCGGATACGAAACGAATCCATAGCCTTTTGCCTTGTTTGTGGCCGTATCTCTGATAATTTTAGCTTCGGAGACGTCTCCAAAGGCTAGGAATGCCTCACGAAGCTTCGTAGAGTCCACTTCTGATGAGAGATCGCCGACGAAGACGTGGAAGTGACGAGAGGTCTCTTGCTTTCGGGAGTCGCCTGGTTGGCTGGCGTCCACTGCCCAATTCACACGCATCTCCTGGAACAAAATGACCATTTACAGAGATTTATGGACCAGTTTAAGTCAATTTAGGTCAATTTTTAGTGATTTTTAGACTAATTCTAGGCTAAAATAGGCCAATTTTTAGGAATTTACTACTTAGAAAACACAGAAATTAGTCTAAATTAGTCCAGAAATCAATGAAAATTGGTGGTTTTTGAACCAATTTTTGCACATTTCAAGCCAATTTTCAGAGTTTTTGGACCAATTTGTGCCGTTTTTTTTAGCAAATTTTCGACCGATTTTCGACCAAAATAGGCCAATTTTTGATGATTTCTGGAGCAATTTGAAGCAATTTGAAGCAATTTTAGACCAATTTTTAGTGATTTTTTTGACCAATTGCAGGCTAAAATAGTCTGTTTTCCGGTTACTTTTGGACCATTTTTTACCAATTTAAGGCTAAAATATGCCGATTTATAGTGATTTTTGGCTCCTGAAATTGATCCAAAAATGATGAAAATCGTCTATAAACGCTTTTTTAAGCAATTTTAGGCTAAAGTAGGTCAATTTTTAGTGATTTTTGGATCAATTTTAG</canonical>
            <polymorphic>GATCTGTCCAACGTAGACCGAGGTGTTATCCGCTGACGTCTGATTATAGATCTCATCGAACGTCTTCTCATAGTGTCTGCGCTCTCCTCGTTCCCCACGATCTCTTCTCTCTCCACCTCCTTCCTCCTCCGGCTTCCGAGTCGCCCAATTTGTCCGGATGGTCCGTCTACCCAACCATTGTCCATTCATCTGCTCGATGGCTCTCTCGGCATCCTCTCTTCTCGGATACGAAACGAATCCATAGCCTTTTGCCTTGTTTGTGGCCGTATCTCTGATAATTTTAGCTTCGGAGACGTCTCCAAAGGCTAGGAATGCCTCACGAAGCTTCGTAGAGTCCACTTCTGATGAGAGATCGCCGACGAAGACGTGGAAGTGACGAGAGGTCTCTTGCTTTCGGGAGTCGCCTGGTTGGCTGGCGTCCACTGCCCAATTCACACGCATCTCCTGGAACAAAATGACCATTTACAGAGATTTATGGACCAGTTTAAGTCAATTTAGGYCAATTTTTAGTGATTTTTAGACTAATTCTAGGCTAAAATAGGCCAATTTTTAGGAATTTACTACTTAGAAAACACAGAAATTAGTCTAAATTAGTCCAGAAATCAATGAAAATTGGTGGTTTTTGAACCAATTTTTGCACATTTCAAGCCAATTTTCAGAGTTTTTGGACCAATTTGTGCCGTTTTTTTTAGCAAATTTTCGACCGATTTTCGACCAAAATAGGCCAATTTTTGATGATTTCTGGAGCAATTTGAAGCAATTTGAAGCAATTTTAGACCAATTTTTAGTGATTTTTTTGACCAATTGCAGGCTAAAATAGTCTGTTTTCCGGTTACTTTTGGACCATTTTTTACCAATTTAAGGCTAAAATATGCCGATTTATAGTGATTTTTGGCTCCTGAAATTGATCCAAAAATGATGAAAATCGTCTATAAACGCTTTTTTAAGCAATTTTAGGCTAAAGTAGGTCAATTTTTAGTGATTTTTGGATCAATTTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGAGAGGTCTCTTGCTTTC</pcr_primer_p1>
		<pcr_primer_p2>AATTTTCATTGATTTCTGGACTA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ACGAGAGGTCTCTTGCTTTCGGGAGTCGCCTGGTTGGCTGGCGTCCACTGCCCAATTCACACGCATCTCCTGGAACAAAATGACCATTTACAGAGATTTATGGACCAGTTTAAGTCAATTTAGGTCAATTTTTAGTGATTTTTAGACTAATTCTAGGCTAAAATAGGCCAATTTTTAGGAATTTACTACTTAGAAAACACAGAAATTAGTCTAAATTAGTCCAGAAATCAATGAAAATT</canonical_amplicon>
		<polymorphic_amplicon>ACGAGAGGTCTCTTGCTTTCGGGAGTCGCCTGGTTGGCTGGCGTCCACTGCCCAATTCACACGCATCTCCTGGAACAAAATGACCATTTACAGAGATTTATGGACCAGTTTAAGTCAATTTAGGYCAATTTTTAGTGATTTTTAGACTAATTCTAGGCTAAAATAGGCCAATTTTTAGGAATTTACTACTTAGAAAACACAGAAATTAGTCTAAATTAGTCCAGAAATCAATGAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26422</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>324802</contig_pos>
        <strand>+</strand>
        <context>aggaatttAC[A/T]ACTTAGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATTTTTAGACTAATTCTAGGCTAAAATAGGCCAATTTTTAGGAATTTAC</left_flank>
        <right_flank>ACTTAGAAAACACAGAAATTAGTCTAAATTAGTCCAGAAATCAATGAAAA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCTCATAGTGTCTGCGCTCTCCTCGTTCCCCACGATCTCTTCTCTCTCCACCTCCTTCCTCCTCCGGCTTCCGAGTCGCCCAATTTGTCCGGATGGTCCGTCTACCCAACCATTGTCCATTCATCTGCTCGATGGCTCTCTCGGCATCCTCTCTTCTCGGATACGAAACGAATCCATAGCCTTTTGCCTTGTTTGTGGCCGTATCTCTGATAATTTTAGCTTCGGAGACGTCTCCAAAGGCTAGGAATGCCTCACGAAGCTTCGTAGAGTCCACTTCTGATGAGAGATCGCCGACGAAGACGTGGAAGTGACGAGAGGTCTCTTGCTTTCGGGAGTCGCCTGGTTGGCTGGCGTCCACTGCCCAATTCACACGCATCTCCTGGAACAAAATGACCATTTACAGAGATTTATGGACCAGTTTAAGTCAATTTAGGTCAATTTTTAGTGATTTTTAGACTAATTCTAGGCTAAAATAGGCCAATTTTTAGGAATTTACTACTTAGAAAACACAGAAATTAGTCTAAATTAGTCCAGAAATCAATGAAAATTGGTGGTTTTTGAACCAATTTTTGCACATTTCAAGCCAATTTTCAGAGTTTTTGGACCAATTTGTGCCGTTTTTTTTAGCAAATTTTCGACCGATTTTCGACCAAAATAGGCCAATTTTTGATGATTTCTGGAGCAATTTGAAGCAATTTGAAGCAATTTTAGACCAATTTTTAGTGATTTTTTTGACCAATTGCAGGCTAAAATAGTCTGTTTTCCGGTTACTTTTGGACCATTTTTTACCAATTTAAGGCTAAAATATGCCGATTTATAGTGATTTTTGGCTCCTGAAATTGATCCAAAAATGATGAAAATCGTCTATAAACGCTTTTTTAAGCAATTTTAGGCTAAAGTAGGTCAATTTTTAGTGATTTTTGGATCAATTTTAGCCAATTTAGTCACATTTTTAGAGGTTTTGGGACAATTTAAGCTAATCTAGACTGGTTTTTAT</canonical>
            <polymorphic>TCTTCTCATAGTGTCTGCGCTCTCCTCGTTCCCCACGATCTCTTCTCTCTCCACCTCCTTCCTCCTCCGGCTTCCGAGTCGCCCAATTTGTCCGGATGGTCCGTCTACCCAACCATTGTCCATTCATCTGCTCGATGGCTCTCTCGGCATCCTCTCTTCTCGGATACGAAACGAATCCATAGCCTTTTGCCTTGTTTGTGGCCGTATCTCTGATAATTTTAGCTTCGGAGACGTCTCCAAAGGCTAGGAATGCCTCACGAAGCTTCGTAGAGTCCACTTCTGATGAGAGATCGCCGACGAAGACGTGGAAGTGACGAGAGGTCTCTTGCTTTCGGGAGTCGCCTGGTTGGCTGGCGTCCACTGCCCAATTCACACGCATCTCCTGGAACAAAATGACCATTTACAGAGATTTATGGACCAGTTTAAGTCAATTTAGGTCAATTTTTAGTGATTTTTAGACTAATTCTAGGCTAAAATAGGCCAATTTTTAGGAATTTACWACTTAGAAAACACAGAAATTAGTCTAAATTAGTCCAGAAATCAATGAAAATTGGTGGTTTTTGAACCAATTTTTGCACATTTCAAGCCAATTTTCAGAGTTTTTGGACCAATTTGTGCCGTTTTTTTTAGCAAATTTTCGACCGATTTTCGACCAAAATAGGCCAATTTTTGATGATTTCTGGAGCAATTTGAAGCAATTTGAAGCAATTTTAGACCAATTTTTAGTGATTTTTTTGACCAATTGCAGGCTAAAATAGTCTGTTTTCCGGTTACTTTTGGACCATTTTTTACCAATTTAAGGCTAAAATATGCCGATTTATAGTGATTTTTGGCTCCTGAAATTGATCCAAAAATGATGAAAATCGTCTATAAACGCTTTTTTAAGCAATTTTAGGCTAAAGTAGGTCAATTTTTAGTGATTTTTGGATCAATTTTAGCCAATTTAGTCACATTTTTAGAGGTTTTGGGACAATTTAAGCTAATCTAGACTGGTTTTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGAGAGGTCTCTTGCTTTC</pcr_primer_p1>
		<pcr_primer_p2>CAAAAACCACCAATTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGAGAGGTCTCTTGCTTTCGGGAGTCGCCTGGTTGGCTGGCGTCCACTGCCCAATTCACACGCATCTCCTGGAACAAAATGACCATTTACAGAGATTTATGGACCAGTTTAAGTCAATTTAGGTCAATTTTTAGTGATTTTTAGACTAATTCTAGGCTAAAATAGGCCAATTTTTAGGAATTTACTACTTAGAAAACACAGAAATTAGTCTAAATTAGTCCAGAAATCAATGAAAATTGGTGGTTTTTG</canonical_amplicon>
		<polymorphic_amplicon>ACGAGAGGTCTCTTGCTTTCGGGAGTCGCCTGGTTGGCTGGCGTCCACTGCCCAATTCACACGCATCTCCTGGAACAAAATGACCATTTACAGAGATTTATGGACCAGTTTAAGTCAATTTAGGTCAATTTTTAGTGATTTTTAGACTAATTCTAGGCTAAAATAGGCCAATTTTTAGGAATTTACWACTTAGAAAACACAGAAATTAGTCTAAATTAGTCCAGAAATCAATGAAAATTGGTGGTTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26423</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>324879</contig_pos>
        <strand></strand>
        <context>CAATTTTTGC[A/C]matttcaagc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTAGTCCAGAAATCAATGAAAATTGGTGGTTTTTGAACCAATTTTTGC</left_flank>
        <right_flank>CATTTCAAGCCAATTTTCAGAGTTTTTGGACCAATTTGTGCCGTTTTTTT</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCGCCCAATTTGTCCGGATGGTCCGTCTACCCAACCATTGTCCATTCATCTGCTCGATGGCTCTCTCGGCATCCTCTCTTCTCGGATACGAAACGAATCCATAGCCTTTTGCCTTGTTTGTGGCCGTATCTCTGATAATTTTAGCTTCGGAGACGTCTCCAAAGGCTAGGAATGCCTCACGAAGCTTCGTAGAGTCCACTTCTGATGAGAGATCGCCGACGAAGACGTGGAAGTGACGAGAGGTCTCTTGCTTTCGGGAGTCGCCTGGTTGGCTGGCGTCCACTGCCCAATTCACACGCATCTCCTGGAACAAAATGACCATTTACAGAGATTTATGGACCAGTTTAAGTCAATTTAGGTCAATTTTTAGTGATTTTTAGACTAATTCTAGGCTAAAATAGGCCAATTTTTAGGAATTTACTACTTAGAAAACACAGAAATTAGTCTAAATTAGTCCAGAAATCAATGAAAATTGGTGGTTTTTGAACCAATTTTTGCACATTTCAAGCCAATTTTCAGAGTTTTTGGACCAATTTGTGCCGTTTTTTTTAGCAAATTTTCGACCGATTTTCGACCAAAATAGGCCAATTTTTGATGATTTCTGGAGCAATTTGAAGCAATTTGAAGCAATTTTAGACCAATTTTTAGTGATTTTTTTGACCAATTGCAGGCTAAAATAGTCTGTTTTCCGGTTACTTTTGGACCATTTTTTACCAATTTAAGGCTAAAATATGCCGATTTATAGTGATTTTTGGCTCCTGAAATTGATCCAAAAATGATGAAAATCGTCTATAAACGCTTTTTTAAGCAATTTTAGGCTAAAGTAGGTCAATTTTTAGTGATTTTTGGATCAATTTTAGCCAATTTAGTCACATTTTTAGAGGTTTTGGGACAATTTAAGCTAATCTAGACTGGTTTTTATGGATTTTAAACCAATTTTAGACTAGAATATGCTAATTTTCAGTGATTTTTTGACCATTTTAGCTAATTTAGGTCAAT</canonical>
            <polymorphic>GTCGCCCAATTTGTCCGGATGGTCCGTCTACCCAACCATTGTCCATTCATCTGCTCGATGGCTCTCTCGGCATCCTCTCTTCTCGGATACGAAACGAATCCATAGCCTTTTGCCTTGTTTGTGGCCGTATCTCTGATAATTTTAGCTTCGGAGACGTCTCCAAAGGCTAGGAATGCCTCACGAAGCTTCGTAGAGTCCACTTCTGATGAGAGATCGCCGACGAAGACGTGGAAGTGACGAGAGGTCTCTTGCTTTCGGGAGTCGCCTGGTTGGCTGGCGTCCACTGCCCAATTCACACGCATCTCCTGGAACAAAATGACCATTTACAGAGATTTATGGACCAGTTTAAGTCAATTTAGGTCAATTTTTAGTGATTTTTAGACTAATTCTAGGCTAAAATAGGCCAATTTTTAGGAATTTACTACTTAGAAAACACAGAAATTAGTCTAAATTAGTCCAGAAATCAATGAAAATTGGTGGTTTTTGAACCAATTTTTGCMCATTTCAAGCCAATTTTCAGAGTTTTTGGACCAATTTGTGCCGTTTTTTTTAGCAAATTTTCGACCGATTTTCGACCAAAATAGGCCAATTTTTGATGATTTCTGGAGCAATTTGAAGCAATTTGAAGCAATTTTAGACCAATTTTTAGTGATTTTTTTGACCAATTGCAGGCTAAAATAGTCTGTTTTCCGGTTACTTTTGGACCATTTTTTACCAATTTAAGGCTAAAATATGCCGATTTATAGTGATTTTTGGCTCCTGAAATTGATCCAAAAATGATGAAAATCGTCTATAAACGCTTTTTTAAGCAATTTTAGGCTAAAGTAGGTCAATTTTTAGTGATTTTTGGATCAATTTTAGCCAATTTAGTCACATTTTTAGAGGTTTTGGGACAATTTAAGCTAATCTAGACTGGTTTTTATGGATTTTAAACCAATTTTAGACTAGAATATGCTAATTTTCAGTGATTTTTTGACCATTTTAGCTAATTTAGGTCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>498 332 170</canonical_bands>
                <polymorphic_bands>668 332</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>123 111 97 94 94 76 62 57 47 44 40 33 31 31 21 19 12 6 2</canonical_bands>
                <polymorphic_bands>123 111 97 94 94 76 62 61 57 47 44 33 31 31 19 12 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTAAATTAGTCCAGAAATCAATG</pcr_primer_p1>
		<pcr_primer_p2>AGTCTTTTGGATAGGGTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>794</pcr_amplicon_size>
		<canonical_amplicon>TCTAAATTAGTCCAGAAATCAATGAAAATTGGTGGTTTTTGAACCAATTTTTGCACATTTCAAGCCAATTTTCAG</canonical_amplicon>
		<polymorphic_amplicon>TCTAAATTAGTCCAGAAATCAATGAAAATTGGTGGTTTTTGAACCAATTTTTGCMCATTTCAAGCCAATTTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26424</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>324880</contig_pos>
        <strand></strand>
        <context>AATTTTTGCM[C/A]atttcaagcc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATTAGTCCAGAAATCAATGAAAATTGGTGGTTTTTGAACCAATTTTTGCA</left_flank>
        <right_flank>ATTTCAAGCCAATTTTCAGAGTTTTTGGACCAATTTGTGCCGTTTTTTTT</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGCCCAATTTGTCCGGATGGTCCGTCTACCCAACCATTGTCCATTCATCTGCTCGATGGCTCTCTCGGCATCCTCTCTTCTCGGATACGAAACGAATCCATAGCCTTTTGCCTTGTTTGTGGCCGTATCTCTGATAATTTTAGCTTCGGAGACGTCTCCAAAGGCTAGGAATGCCTCACGAAGCTTCGTAGAGTCCACTTCTGATGAGAGATCGCCGACGAAGACGTGGAAGTGACGAGAGGTCTCTTGCTTTCGGGAGTCGCCTGGTTGGCTGGCGTCCACTGCCCAATTCACACGCATCTCCTGGAACAAAATGACCATTTACAGAGATTTATGGACCAGTTTAAGTCAATTTAGGTCAATTTTTAGTGATTTTTAGACTAATTCTAGGCTAAAATAGGCCAATTTTTAGGAATTTACTACTTAGAAAACACAGAAATTAGTCTAAATTAGTCCAGAAATCAATGAAAATTGGTGGTTTTTGAACCAATTTTTGCACATTTCAAGCCAATTTTCAGAGTTTTTGGACCAATTTGTGCCGTTTTTTTTAGCAAATTTTCGACCGATTTTCGACCAAAATAGGCCAATTTTTGATGATTTCTGGAGCAATTTGAAGCAATTTGAAGCAATTTTAGACCAATTTTTAGTGATTTTTTTGACCAATTGCAGGCTAAAATAGTCTGTTTTCCGGTTACTTTTGGACCATTTTTTACCAATTTAAGGCTAAAATATGCCGATTTATAGTGATTTTTGGCTCCTGAAATTGATCCAAAAATGATGAAAATCGTCTATAAACGCTTTTTTAAGCAATTTTAGGCTAAAGTAGGTCAATTTTTAGTGATTTTTGGATCAATTTTAGCCAATTTAGTCACATTTTTAGAGGTTTTGGGACAATTTAAGCTAATCTAGACTGGTTTTTATGGATTTTAAACCAATTTTAGACTAGAATATGCTAATTTTCAGTGATTTTTTGACCATTTTAGCTAATTTAGGTCAATT</canonical>
            <polymorphic>TCGCCCAATTTGTCCGGATGGTCCGTCTACCCAACCATTGTCCATTCATCTGCTCGATGGCTCTCTCGGCATCCTCTCTTCTCGGATACGAAACGAATCCATAGCCTTTTGCCTTGTTTGTGGCCGTATCTCTGATAATTTTAGCTTCGGAGACGTCTCCAAAGGCTAGGAATGCCTCACGAAGCTTCGTAGAGTCCACTTCTGATGAGAGATCGCCGACGAAGACGTGGAAGTGACGAGAGGTCTCTTGCTTTCGGGAGTCGCCTGGTTGGCTGGCGTCCACTGCCCAATTCACACGCATCTCCTGGAACAAAATGACCATTTACAGAGATTTATGGACCAGTTTAAGTCAATTTAGGTCAATTTTTAGTGATTTTTAGACTAATTCTAGGCTAAAATAGGCCAATTTTTAGGAATTTACTACTTAGAAAACACAGAAATTAGTCTAAATTAGTCCAGAAATCAATGAAAATTGGTGGTTTTTGAACCAATTTTTGCAMATTTCAAGCCAATTTTCAGAGTTTTTGGACCAATTTGTGCCGTTTTTTTTAGCAAATTTTCGACCGATTTTCGACCAAAATAGGCCAATTTTTGATGATTTCTGGAGCAATTTGAAGCAATTTGAAGCAATTTTAGACCAATTTTTAGTGATTTTTTTGACCAATTGCAGGCTAAAATAGTCTGTTTTCCGGTTACTTTTGGACCATTTTTTACCAATTTAAGGCTAAAATATGCCGATTTATAGTGATTTTTGGCTCCTGAAATTGATCCAAAAATGATGAAAATCGTCTATAAACGCTTTTTTAAGCAATTTTAGGCTAAAGTAGGTCAATTTTTAGTGATTTTTGGATCAATTTTAGCCAATTTAGTCACATTTTTAGAGGTTTTGGGACAATTTAAGCTAATCTAGACTGGTTTTTATGGATTTTAAACCAATTTTAGACTAGAATATGCTAATTTTCAGTGATTTTTTGACCATTTTAGCTAATTTAGGTCAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>122 111 97 94 94 76 62 57 47 44 40 34 31 31 21 19 12 6 2</canonical_bands>
                <polymorphic_bands>122 111 97 94 94 76 62 61 57 47 44 34 31 31 19 12 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTAGTCCAGAAATCAATGAA</pcr_primer_p1>
		<pcr_primer_p2>AGTCTTTTGGATAGGGTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>791</pcr_amplicon_size>
		<canonical_amplicon>AAATTAGTCCAGAAATCAATGAAAATTGGTGGTTTTTGAACCAATTTTTGCACATTTCAAGCCAATTTTCAGA</canonical_amplicon>
		<polymorphic_amplicon>AAATTAGTCCAGAAATCAATGAAAATTGGTGGTTTTTGAACCAATTTTTGCAMATTTCAAGCCAATTTTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26425</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>324907</contig_pos>
        <strand></strand>
        <context>cagagttttt[G/A]gaccaatttg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGGTTTTTGAACCAATTTTTGCACATTTCAAGCCAATTTTCAGAGTTTTT</left_flank>
        <right_flank>GACCAATTTGTGCCGTTTTTTTTAGCAAATTTTCGACCGATTTTCGACCA</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACCCAACCATTGTCCATTCATCTGCTCGATGGCTCTCTCGGCATCCTCTCTTCTCGGATACGAAACGAATCCATAGCCTTTTGCCTTGTTTGTGGCCGTATCTCTGATAATTTTAGCTTCGGAGACGTCTCCAAAGGCTAGGAATGCCTCACGAAGCTTCGTAGAGTCCACTTCTGATGAGAGATCGCCGACGAAGACGTGGAAGTGACGAGAGGTCTCTTGCTTTCGGGAGTCGCCTGGTTGGCTGGCGTCCACTGCCCAATTCACACGCATCTCCTGGAACAAAATGACCATTTACAGAGATTTATGGACCAGTTTAAGTCAATTTAGGTCAATTTTTAGTGATTTTTAGACTAATTCTAGGCTAAAATAGGCCAATTTTTAGGAATTTACTACTTAGAAAACACAGAAATTAGTCTAAATTAGTCCAGAAATCAATGAAAATTGGTGGTTTTTGAACCAATTTTTGCACATTTCAAGCCAATTTTCAGAGTTTTTGGACCAATTTGTGCCGTTTTTTTTAGCAAATTTTCGACCGATTTTCGACCAAAATAGGCCAATTTTTGATGATTTCTGGAGCAATTTGAAGCAATTTGAAGCAATTTTAGACCAATTTTTAGTGATTTTTTTGACCAATTGCAGGCTAAAATAGTCTGTTTTCCGGTTACTTTTGGACCATTTTTTACCAATTTAAGGCTAAAATATGCCGATTTATAGTGATTTTTGGCTCCTGAAATTGATCCAAAAATGATGAAAATCGTCTATAAACGCTTTTTTAAGCAATTTTAGGCTAAAGTAGGTCAATTTTTAGTGATTTTTGGATCAATTTTAGCCAATTTAGTCACATTTTTAGAGGTTTTGGGACAATTTAAGCTAATCTAGACTGGTTTTTATGGATTTTAAACCAATTTTAGACTAGAATATGCTAATTTTCAGTGATTTTTTGACCATTTTAGCTAATTTAGGTCAATTTTCAGTGATTTTTGAACTAATTTTAAG</canonical>
            <polymorphic>TACCCAACCATTGTCCATTCATCTGCTCGATGGCTCTCTCGGCATCCTCTCTTCTCGGATACGAAACGAATCCATAGCCTTTTGCCTTGTTTGTGGCCGTATCTCTGATAATTTTAGCTTCGGAGACGTCTCCAAAGGCTAGGAATGCCTCACGAAGCTTCGTAGAGTCCACTTCTGATGAGAGATCGCCGACGAAGACGTGGAAGTGACGAGAGGTCTCTTGCTTTCGGGAGTCGCCTGGTTGGCTGGCGTCCACTGCCCAATTCACACGCATCTCCTGGAACAAAATGACCATTTACAGAGATTTATGGACCAGTTTAAGTCAATTTAGGTCAATTTTTAGTGATTTTTAGACTAATTCTAGGCTAAAATAGGCCAATTTTTAGGAATTTACTACTTAGAAAACACAGAAATTAGTCTAAATTAGTCCAGAAATCAATGAAAATTGGTGGTTTTTGAACCAATTTTTGCACATTTCAAGCCAATTTTCAGAGTTTTTRGACCAATTTGTGCCGTTTTTTTTAGCAAATTTTCGACCGATTTTCGACCAAAATAGGCCAATTTTTGATGATTTCTGGAGCAATTTGAAGCAATTTGAAGCAATTTTAGACCAATTTTTAGTGATTTTTTTGACCAATTGCAGGCTAAAATAGTCTGTTTTCCGGTTACTTTTGGACCATTTTTTACCAATTTAAGGCTAAAATATGCCGATTTATAGTGATTTTTGGCTCCTGAAATTGATCCAAAAATGATGAAAATCGTCTATAAACGCTTTTTTAAGCAATTTTAGGCTAAAGTAGGTCAATTTTTAGTGATTTTTGGATCAATTTTAGCCAATTTAGTCACATTTTTAGAGGTTTTGGGACAATTTAAGCTAATCTAGACTGGTTTTTATGGATTTTAAACCAATTTTAGACTAGAATATGCTAATTTTCAGTGATTTTTTGACCATTTTAGCTAATTTAGGTCAATTTTCAGTGATTTTTGAACTAATTTTAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>326 310 190 174</canonical_bands>
                <polymorphic_bands>364 326 310</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>326 310 190 174</canonical_bands>
                <polymorphic_bands>364 326 310</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGGTTTTTGAACCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AGTCTTTTGGATAGGGTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>763</pcr_amplicon_size>
		<canonical_amplicon>GTGGTTTTTGAACCAATTTTTGCACATTTCAAGCCAATTTTCAGAGTTTTTGGACCAATTTGTGCCGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GTGGTTTTTGAACCAATTTTTGCACATTTCAAGCCAATTTTCAGAGTTTTTRGACCAATTTGTGCCGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26426</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>324930</contig_pos>
        <strand></strand>
        <context>ccgttttttt[T/A]agcraatttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CATTTCAAGCCAATTTTCAGAGTTTTTGGACCAATTTGTGCCGTTTTTTT</left_flank>
        <right_flank>AGCAAATTTTCGACCGATTTTCGACCAAAATAGGCCAATTTTTGATGATT</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTCGATGGCTCTCTCGGCATCCTCTCTTCTCGGATACGAAACGAATCCATAGCCTTTTGCCTTGTTTGTGGCCGTATCTCTGATAATTTTAGCTTCGGAGACGTCTCCAAAGGCTAGGAATGCCTCACGAAGCTTCGTAGAGTCCACTTCTGATGAGAGATCGCCGACGAAGACGTGGAAGTGACGAGAGGTCTCTTGCTTTCGGGAGTCGCCTGGTTGGCTGGCGTCCACTGCCCAATTCACACGCATCTCCTGGAACAAAATGACCATTTACAGAGATTTATGGACCAGTTTAAGTCAATTTAGGTCAATTTTTAGTGATTTTTAGACTAATTCTAGGCTAAAATAGGCCAATTTTTAGGAATTTACTACTTAGAAAACACAGAAATTAGTCTAAATTAGTCCAGAAATCAATGAAAATTGGTGGTTTTTGAACCAATTTTTGCACATTTCAAGCCAATTTTCAGAGTTTTTGGACCAATTTGTGCCGTTTTTTTTAGCAAATTTTCGACCGATTTTCGACCAAAATAGGCCAATTTTTGATGATTTCTGGAGCAATTTGAAGCAATTTGAAGCAATTTTAGACCAATTTTTAGTGATTTTTTTGACCAATTGCAGGCTAAAATAGTCTGTTTTCCGGTTACTTTTGGACCATTTTTTACCAATTTAAGGCTAAAATATGCCGATTTATAGTGATTTTTGGCTCCTGAAATTGATCCAAAAATGATGAAAATCGTCTATAAACGCTTTTTTAAGCAATTTTAGGCTAAAGTAGGTCAATTTTTAGTGATTTTTGGATCAATTTTAGCCAATTTAGTCACATTTTTAGAGGTTTTGGGACAATTTAAGCTAATCTAGACTGGTTTTTATGGATTTTAAACCAATTTTAGACTAGAATATGCTAATTTTCAGTGATTTTTTGACCATTTTAGCTAATTTAGGTCAATTTTCAGTGATTTTTGAACTAATTTTAAGCTAAAGGGTCAATTTTGGACCAA</canonical>
            <polymorphic>TGCTCGATGGCTCTCTCGGCATCCTCTCTTCTCGGATACGAAACGAATCCATAGCCTTTTGCCTTGTTTGTGGCCGTATCTCTGATAATTTTAGCTTCGGAGACGTCTCCAAAGGCTAGGAATGCCTCACGAAGCTTCGTAGAGTCCACTTCTGATGAGAGATCGCCGACGAAGACGTGGAAGTGACGAGAGGTCTCTTGCTTTCGGGAGTCGCCTGGTTGGCTGGCGTCCACTGCCCAATTCACACGCATCTCCTGGAACAAAATGACCATTTACAGAGATTTATGGACCAGTTTAAGTCAATTTAGGTCAATTTTTAGTGATTTTTAGACTAATTCTAGGCTAAAATAGGCCAATTTTTAGGAATTTACTACTTAGAAAACACAGAAATTAGTCTAAATTAGTCCAGAAATCAATGAAAATTGGTGGTTTTTGAACCAATTTTTGCACATTTCAAGCCAATTTTCAGAGTTTTTGGACCAATTTGTGCCGTTTTTTTWAGCAAATTTTCGACCGATTTTCGACCAAAATAGGCCAATTTTTGATGATTTCTGGAGCAATTTGAAGCAATTTGAAGCAATTTTAGACCAATTTTTAGTGATTTTTTTGACCAATTGCAGGCTAAAATAGTCTGTTTTCCGGTTACTTTTGGACCATTTTTTACCAATTTAAGGCTAAAATATGCCGATTTATAGTGATTTTTGGCTCCTGAAATTGATCCAAAAATGATGAAAATCGTCTATAAACGCTTTTTTAAGCAATTTTAGGCTAAAGTAGGTCAATTTTTAGTGATTTTTGGATCAATTTTAGCCAATTTAGTCACATTTTTAGAGGTTTTGGGACAATTTAAGCTAATCTAGACTGGTTTTTATGGATTTTAAACCAATTTTAGACTAGAATATGCTAATTTTCAGTGATTTTTTGACCATTTTAGCTAATTTAGGTCAATTTTCAGTGATTTTTGAACTAATTTTAAGCTAAAGGGTCAATTTTGGACCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGTTTTTGAACCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AGTCTTTTGGATAGGGTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>763</pcr_amplicon_size>
		<canonical_amplicon>GTGGTTTTTGAACCAATTTTTGCACATTTCAAGCCAATTTTCAGAGTTTTTGGACCAATTTGTGCCGTTTTTTTTAGCAAATTTTCGACCGATTT</canonical_amplicon>
		<polymorphic_amplicon>GTGGTTTTTGAACCAATTTTTGCACATTTCAAGCCAATTTTCAGAGTTTTTGGACCAATTTGTGCCGTTTTTTTWAGCAAATTTTCGACCGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26427</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>324934</contig_pos>
        <strand></strand>
        <context>ttttttwagc[A/G]aattttcgac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAAGCCAATTTTCAGAGTTTTTGGACCAATTTGTGCCGTTTTTTTTAGC</left_flank>
        <right_flank>AATTTTCGACCGATTTTCGACCAAAATAGGCCAATTTTTGATGATTTCTG</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATGGCTCTCTCGGCATCCTCTCTTCTCGGATACGAAACGAATCCATAGCCTTTTGCCTTGTTTGTGGCCGTATCTCTGATAATTTTAGCTTCGGAGACGTCTCCAAAGGCTAGGAATGCCTCACGAAGCTTCGTAGAGTCCACTTCTGATGAGAGATCGCCGACGAAGACGTGGAAGTGACGAGAGGTCTCTTGCTTTCGGGAGTCGCCTGGTTGGCTGGCGTCCACTGCCCAATTCACACGCATCTCCTGGAACAAAATGACCATTTACAGAGATTTATGGACCAGTTTAAGTCAATTTAGGTCAATTTTTAGTGATTTTTAGACTAATTCTAGGCTAAAATAGGCCAATTTTTAGGAATTTACTACTTAGAAAACACAGAAATTAGTCTAAATTAGTCCAGAAATCAATGAAAATTGGTGGTTTTTGAACCAATTTTTGCACATTTCAAGCCAATTTTCAGAGTTTTTGGACCAATTTGTGCCGTTTTTTTTAGCAAATTTTCGACCGATTTTCGACCAAAATAGGCCAATTTTTGATGATTTCTGGAGCAATTTGAAGCAATTTGAAGCAATTTTAGACCAATTTTTAGTGATTTTTTTGACCAATTGCAGGCTAAAATAGTCTGTTTTCCGGTTACTTTTGGACCATTTTTTACCAATTTAAGGCTAAAATATGCCGATTTATAGTGATTTTTGGCTCCTGAAATTGATCCAAAAATGATGAAAATCGTCTATAAACGCTTTTTTAAGCAATTTTAGGCTAAAGTAGGTCAATTTTTAGTGATTTTTGGATCAATTTTAGCCAATTTAGTCACATTTTTAGAGGTTTTGGGACAATTTAAGCTAATCTAGACTGGTTTTTATGGATTTTAAACCAATTTTAGACTAGAATATGCTAATTTTCAGTGATTTTTTGACCATTTTAGCTAATTTAGGTCAATTTTCAGTGATTTTTGAACTAATTTTAAGCTAAAGGGTCAATTTTGGACCAAATTA</canonical>
            <polymorphic>CGATGGCTCTCTCGGCATCCTCTCTTCTCGGATACGAAACGAATCCATAGCCTTTTGCCTTGTTTGTGGCCGTATCTCTGATAATTTTAGCTTCGGAGACGTCTCCAAAGGCTAGGAATGCCTCACGAAGCTTCGTAGAGTCCACTTCTGATGAGAGATCGCCGACGAAGACGTGGAAGTGACGAGAGGTCTCTTGCTTTCGGGAGTCGCCTGGTTGGCTGGCGTCCACTGCCCAATTCACACGCATCTCCTGGAACAAAATGACCATTTACAGAGATTTATGGACCAGTTTAAGTCAATTTAGGTCAATTTTTAGTGATTTTTAGACTAATTCTAGGCTAAAATAGGCCAATTTTTAGGAATTTACTACTTAGAAAACACAGAAATTAGTCTAAATTAGTCCAGAAATCAATGAAAATTGGTGGTTTTTGAACCAATTTTTGCACATTTCAAGCCAATTTTCAGAGTTTTTGGACCAATTTGTGCCGTTTTTTTTAGCRAATTTTCGACCGATTTTCGACCAAAATAGGCCAATTTTTGATGATTTCTGGAGCAATTTGAAGCAATTTGAAGCAATTTTAGACCAATTTTTAGTGATTTTTTTGACCAATTGCAGGCTAAAATAGTCTGTTTTCCGGTTACTTTTGGACCATTTTTTACCAATTTAAGGCTAAAATATGCCGATTTATAGTGATTTTTGGCTCCTGAAATTGATCCAAAAATGATGAAAATCGTCTATAAACGCTTTTTTAAGCAATTTTAGGCTAAAGTAGGTCAATTTTTAGTGATTTTTGGATCAATTTTAGCCAATTTAGTCACATTTTTAGAGGTTTTGGGACAATTTAAGCTAATCTAGACTGGTTTTTATGGATTTTAAACCAATTTTAGACTAGAATATGCTAATTTTCAGTGATTTTTTGACCATTTTAGCTAATTTAGGTCAATTTTCAGTGATTTTTGAACTAATTTTAAGCTAAAGGGTCAATTTTGGACCAAATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>500 360 140</canonical_bands>
                <polymorphic_bands>640 360</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGGTTTTTGAACCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AGTCTTTTGGATAGGGTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>763</pcr_amplicon_size>
		<canonical_amplicon>GTGGTTTTTGAACCAATTTTTGCACATTTCAAGCCAATTTTCAGAGTTTTTGGACCAATTTGTGCCGTTTTTTTTAGCAAATTTTCGACCGATTTTCGA</canonical_amplicon>
		<polymorphic_amplicon>GTGGTTTTTGAACCAATTTTTGCACATTTCAAGCCAATTTTCAGAGTTTTTGGACCAATTTGTGCCGTTTTTTTTAGCRAATTTTCGACCGATTTTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26428</snp_id>
        <super_contig>c002300642.Contig2</super_contig>
        <contig_pos>324968</contig_pos>
        <strand></strand>
        <context>aaataggcca[A/G]tttttgatga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCCGTTTTTTTTAGCAAATTTTCGACCGATTTTCGACCAAAATAGGCCA</left_flank>
        <right_flank>TTTTTGATGATTTCTGGAGCAATTTGAAGCAATTTGAAGCAATTTTAGAC</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAAACGAATCCATAGCCTTTTGCCTTGTTTGTGGCCGTATCTCTGATAATTTTAGCTTCGGAGACGTCTCCAAAGGCTAGGAATGCCTCACGAAGCTTCGTAGAGTCCACTTCTGATGAGAGATCGCCGACGAAGACGTGGAAGTGACGAGAGGTCTCTTGCTTTCGGGAGTCGCCTGGTTGGCTGGCGTCCACTGCCCAATTCACACGCATCTCCTGGAACAAAATGACCATTTACAGAGATTTATGGACCAGTTTAAGTCAATTTAGGTCAATTTTTAGTGATTTTTAGACTAATTCTAGGCTAAAATAGGCCAATTTTTAGGAATTTACTACTTAGAAAACACAGAAATTAGTCTAAATTAGTCCAGAAATCAATGAAAATTGGTGGTTTTTGAACCAATTTTTGCACATTTCAAGCCAATTTTCAGAGTTTTTGGACCAATTTGTGCCGTTTTTTTTAGCAAATTTTCGACCGATTTTCGACCAAAATAGGCCAATTTTTGATGATTTCTGGAGCAATTTGAAGCAATTTGAAGCAATTTTAGACCAATTTTTAGTGATTTTTTTGACCAATTGCAGGCTAAAATAGTCTGTTTTCCGGTTACTTTTGGACCATTTTTTACCAATTTAAGGCTAAAATATGCCGATTTATAGTGATTTTTGGCTCCTGAAATTGATCCAAAAATGATGAAAATCGTCTATAAACGCTTTTTTAAGCAATTTTAGGCTAAAGTAGGTCAATTTTTAGTGATTTTTGGATCAATTTTAGCCAATTTAGTCACATTTTTAGAGGTTTTGGGACAATTTAAGCTAATCTAGACTGGTTTTTATGGATTTTAAACCAATTTTAGACTAGAATATGCTAATTTTCAGTGATTTTTTGACCATTTTAGCTAATTTAGGTCAATTTTCAGTGATTTTTGAACTAATTTTAAGCTAAAGGGTCAATTTTGGACCAAATTATGCTAATTTTCAATGCATTTTGACCAATTTTTTT</canonical>
            <polymorphic>CGAAACGAATCCATAGCCTTTTGCCTTGTTTGTGGCCGTATCTCTGATAATTTTAGCTTCGGAGACGTCTCCAAAGGCTAGGAATGCCTCACGAAGCTTCGTAGAGTCCACTTCTGATGAGAGATCGCCGACGAAGACGTGGAAGTGACGAGAGGTCTCTTGCTTTCGGGAGTCGCCTGGTTGGCTGGCGTCCACTGCCCAATTCACACGCATCTCCTGGAACAAAATGACCATTTACAGAGATTTATGGACCAGTTTAAGTCAATTTAGGTCAATTTTTAGTGATTTTTAGACTAATTCTAGGCTAAAATAGGCCAATTTTTAGGAATTTACTACTTAGAAAACACAGAAATTAGTCTAAATTAGTCCAGAAATCAATGAAAATTGGTGGTTTTTGAACCAATTTTTGCACATTTCAAGCCAATTTTCAGAGTTTTTGGACCAATTTGTGCCGTTTTTTTTAGCAAATTTTCGACCGATTTTCGACCAAAATAGGCCARTTTTTGATGATTTCTGGAGCAATTTGAAGCAATTTGAAGCAATTTTAGACCAATTTTTAGTGATTTTTTTGACCAATTGCAGGCTAAAATAGTCTGTTTTCCGGTTACTTTTGGACCATTTTTTACCAATTTAAGGCTAAAATATGCCGATTTATAGTGATTTTTGGCTCCTGAAATTGATCCAAAAATGATGAAAATCGTCTATAAACGCTTTTTTAAGCAATTTTAGGCTAAAGTAGGTCAATTTTTAGTGATTTTTGGATCAATTTTAGCCAATTTAGTCACATTTTTAGAGGTTTTGGGACAATTTAAGCTAATCTAGACTGGTTTTTATGGATTTTAAACCAATTTTAGACTAGAATATGCTAATTTTCAGTGATTTTTTGACCATTTTAGCTAATTTAGGTCAATTTTCAGTGATTTTTGAACTAATTTTAAGCTAAAGGGTCAATTTTGGACCAAATTATGCTAATTTTCAATGCATTTTGACCAATTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>152 63 53 48 47 47 41 32 31 31 24 23 23 22 22 22 22 22 21 21 21 21 21 21 19 19 12 11 10 10 10 10 10 10 10 9 9</canonical_bands>
                <polymorphic_bands>152 63 54 53 48 47 47 41 31 31 24 23 23 22 22 22 22 21 21 21 21 21 21 19 19 12 11 10 10 10 10 10 10 10 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGGTTTTTGAACCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AGTCTTTTGGATAGGGTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>763</pcr_amplicon_size>
		<canonical_amplicon>GTGGTTTTTGAACCAATTTTTGCACATTTCAAGCCAATTTTCAGAGTTTTTGGACCAATTTGTGCCGTTTTTTTTAGCAAATTTTCGACCGATTTTCGACCAAAATAGGCCAATTTTTGATGATTTCTGGAGC</canonical_amplicon>
		<polymorphic_amplicon>GTGGTTTTTGAACCAATTTTTGCACATTTCAAGCCAATTTTCAGAGTTTTTGGACCAATTTGTGCCGTTTTTTTTAGCAAATTTTCGACCGATTTTCGACCAAAATAGGCCARTTTTTGATGATTTCTGGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26430</snp_id>
        <super_contig>c002300808.Contig1</super_contig>
        <contig_pos>29213</contig_pos>
        <strand></strand>
        <context>tttctgcgtc[A/T]cttcaccgga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAACTTTTCGTTTCGTTGTCTGCGTCTCTTCACCGAAAATTTCTGCGTC</left_flank>
        <right_flank>CTTCACCGGAAAAAGATCTCTCGTTTCAGGGGAGAATTTTTTCCTTTTTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGTCATAGTTGCGGAATGTCATAATGTAAAACGCATAGTTACGAAATGTCAAAGTTGCAAAAAGTCATAGTTGCGAAATTTCATAGCTGCGAAACGTCATAGTTGGGTAATGTCATAGTTGCAAAACCGCATAGTTGCGAGATGTCTTAGTTGCCGAATGTCCTAGTTGCGAAACGTCATAGTTGCCAAATATTAAAGTTGCGAAATGTCAAAGCTACGAAATGCCCTATTTGGGAAACTTCCTAGTTGCGAAATGTCTTATAGTTAGTTGCAAATCGTTTCGAAAGTTAGTTTGTCAGAGATTTCAGATTCTCAAAAATCCAAAAAAATTCAAAATATTGGAATTTCGATTTTTTCGATTTTTACAAAATAAAAACGCACAGTGTTTGTTTTACTATCTTTGTGAATGCGCTTTAATGAGAACGCAGCCAAATTGATGGCTGAGGATCAAACTTTTCGTTTCGTTGTCTGCGTCTCTTCACCGAAAATTTCTGCGTCACTTCACCGGAAAAAGATCTCTCGTTTCAGGGGAGAATTTTTTCCTTTTTGAAACTTTGAAAAAGCTTAGCCCCGCCCCTTTATCAATAGAGCGGATTTGCAAAGGTAAAAAAAACAAAACCTGTGAAAACGGTAAAAAGTGCTCACAAACTCGGTATGAAACCTCTGAAAACGCATTCAAAACAATGGATAAAACTGTTTCATTTGAAAATATATCGCAAAAGAACAAGAAAGAAATCATCGAATCGCACAAAAGAAATATATATATATATATATATATATATATAAATTCTATATGTCTGGAAATGGGAAAAACAAGCTCTGTGGGGGGTGGTTGGGTGGGTGTATCAGTGTTAAATTACTAGAATTTTCTAAATTTTTTGGGTGTTAAAAAGCGAAAAAAAAAGGTGGGGAGAAAATATGAAAAATGTGGGAAAATCATGGAAAATCATGGACAAAACCTCGGAAAATTGAGAGAAAAAAGGAGAGAGAAAGAGCTCT</canonical>
            <polymorphic>ACGTCATAGTTGCGGAATGTCATAATGTAAAACGCATAGTTACGAAATGTCAAAGTTGCAAAAAGTCATAGTTGCGAAATTTCATAGCTGCGAAACGTCATAGTTGGGTAATGTCATAGTTGCAAAACCGCATAGTTGCGAGATGTCTTAGTTGCCGAATGTCCTAGTTGCGAAACGTCATAGTTGCCAAATATTAAAGTTGCGAAATGTCAAAGCTACGAAATGCCCTATTTGGGAAACTTCCTAGTTGCGAAATGTCTTATAGTTAGTTGCAAATCGTTTCGAAAGTTAGTTTGTCAGAGATTTCAGATTCTCAAAAATCCAAAAAAATTCAAAATATTGGAATTTCGATTTTTTCGATTTTTACAAAATAAAAACGCACAGTGTTTGTTTTACTATCTTTGTGAATGCGCTTTAATGAGAACGCAGCCAAATTGATGGCTGAGGATCAAACTTTTCGTTTCGTTGTCTGCGTCTCTTCACCGAAAATTTCTGCGTCWCTTCACCGGAAAAAGATCTCTCGTTTCAGGGGAGAATTTTTTCCTTTTTGAAACTTTGAAAAAGCTTAGCCCCGCCCCTTTATCAATAGAGCGGATTTGCAAAGGTAAAAAAAACAAAACCTGTGAAAACGGTAAAAAGTGCTCACAAACTCGGTATGAAACCTCTGAAAACGCATTCAAAACAATGGATAAAACTGTTTCATTTGAAAATATATCGCAAAAGAACAAGAAAGAAATCATCGAATCGCACAAAAGAAATATATATATATATATATATATATATATAAATTCTATATGTCTGGAAATGGGAAAAACAAGCTCTGTGGGGGGTGGTTGGGTGGGTGTATCAGTGTTAAATTACTAGAATTTTCTAAATTTTTTGGGTGTTAAAAAGCGAAAAAAAAAGGTGGGGAGAAAATATGAAAAATGTGGGAAAATCATGGAAAATCATGGACAAAACCTCGGAAAATTGAGAGAAAAAAGGAGAGAGAAAGAGCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>381 120 104 76 76 69 34 23 22 20 18 16 8 8 7 5 5 4 4</canonical_bands>
                <polymorphic_bands>381 120 104 76 76 69 34 23 23 22 20 16 8 8 7 5 4 4</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 458 38</canonical_bands>
                <polymorphic_bands>962 38</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGATTCTCAAAAATCCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGTTTGTGAGCACTTTTTACC</pcr_primer_p2>
		<pcr_amplicon_size>346</pcr_amplicon_size>
		<canonical_amplicon>CAGATTCTCAAAAATCCAAAAAAATTCAAAATATTGGAATTTCGATTTTTTCGATTTTTACAAAATAAAAACGCACAGTGTTTGTTTTACTATCTTTGTGAATGCGCTTTAATGAGAACGCAGCCAAATTGATGGCTGAGGATCAAACTTTTCGTTTCGTTGTCTGCGTCTCTTCACCGAAAATTTCTGCGTCACTTCACCGGAAAAAGATCTCTCGTTTCAGGGGAGAATTTTTTCCTTTTTGAAACTTTGAAAAAGCTTAGCCCCGCCCCTTTATCAATAGAGCGGATTTGCAAAGGTAAAAAAAACAAAACCTGTGAAAACGGTAAAAAGTGCTCACAAACTC</canonical_amplicon>
		<polymorphic_amplicon>CAGATTCTCAAAAATCCAAAAAAATTCAAAATATTGGAATTTCGATTTTTTCGATTTTTACAAAATAAAAACGCACAGTGTTTGTTTTACTATCTTTGTGAATGCGCTTTAATGAGAACGCAGCCAAATTGATGGCTGAGGATCAAACTTTTCGTTTCGTTGTCTGCGTCTCTTCACCGAAAATTTCTGCGTCWCTTCACCGGAAAAAGATCTCTCGTTTCAGGGGAGAATTTTTTCCTTTTTGAAACTTTGAAAAAGCTTAGCCCCGCCCCTTTATCAATAGAGCGGATTTGCAAAGGTAAAAAAAACAAAACCTGTGAAAACGGTAAAAAGTGCTCACAAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26431</snp_id>
        <super_contig>c002300808.Contig1</super_contig>
        <contig_pos>29240</contig_pos>
        <strand></strand>
        <context>tctctcgttt[C/T]aggggagaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTCACCGAAAATTTCTGCGTCACTTCACCGGAAAAAGATCTCTCGTTT</left_flank>
        <right_flank>AGGGGAGAATTTTTTCCTTTTTGAAACTTTGAAAAAGCTTAGCCCCGCCC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAACGCATAGTTACGAAATGTCAAAGTTGCAAAAAGTCATAGTTGCGAAATTTCATAGCTGCGAAACGTCATAGTTGGGTAATGTCATAGTTGCAAAACCGCATAGTTGCGAGATGTCTTAGTTGCCGAATGTCCTAGTTGCGAAACGTCATAGTTGCCAAATATTAAAGTTGCGAAATGTCAAAGCTACGAAATGCCCTATTTGGGAAACTTCCTAGTTGCGAAATGTCTTATAGTTAGTTGCAAATCGTTTCGAAAGTTAGTTTGTCAGAGATTTCAGATTCTCAAAAATCCAAAAAAATTCAAAATATTGGAATTTCGATTTTTTCGATTTTTACAAAATAAAAACGCACAGTGTTTGTTTTACTATCTTTGTGAATGCGCTTTAATGAGAACGCAGCCAAATTGATGGCTGAGGATCAAACTTTTCGTTTCGTTGTCTGCGTCTCTTCACCGAAAATTTCTGCGTCACTTCACCGGAAAAAGATCTCTCGTTTCAGGGGAGAATTTTTTCCTTTTTGAAACTTTGAAAAAGCTTAGCCCCGCCCCTTTATCAATAGAGCGGATTTGCAAAGGTAAAAAAAACAAAACCTGTGAAAACGGTAAAAAGTGCTCACAAACTCGGTATGAAACCTCTGAAAACGCATTCAAAACAATGGATAAAACTGTTTCATTTGAAAATATATCGCAAAAGAACAAGAAAGAAATCATCGAATCGCACAAAAGAAATATATATATATATATATATATATATATAAATTCTATATGTCTGGAAATGGGAAAAACAAGCTCTGTGGGGGGTGGTTGGGTGGGTGTATCAGTGTTAAATTACTAGAATTTTCTAAATTTTTTGGGTGTTAAAAAGCGAAAAAAAAAGGTGGGGAGAAAATATGAAAAATGTGGGAAAATCATGGAAAATCATGGACAAAACCTCGGAAAATTGAGAGAAAAAAGGAGAGAGAAAGAGCTCTAGAATAGTGAAATTCACCAGAAAAAAA</canonical>
            <polymorphic>TAAAACGCATAGTTACGAAATGTCAAAGTTGCAAAAAGTCATAGTTGCGAAATTTCATAGCTGCGAAACGTCATAGTTGGGTAATGTCATAGTTGCAAAACCGCATAGTTGCGAGATGTCTTAGTTGCCGAATGTCCTAGTTGCGAAACGTCATAGTTGCCAAATATTAAAGTTGCGAAATGTCAAAGCTACGAAATGCCCTATTTGGGAAACTTCCTAGTTGCGAAATGTCTTATAGTTAGTTGCAAATCGTTTCGAAAGTTAGTTTGTCAGAGATTTCAGATTCTCAAAAATCCAAAAAAATTCAAAATATTGGAATTTCGATTTTTTCGATTTTTACAAAATAAAAACGCACAGTGTTTGTTTTACTATCTTTGTGAATGCGCTTTAATGAGAACGCAGCCAAATTGATGGCTGAGGATCAAACTTTTCGTTTCGTTGTCTGCGTCTCTTCACCGAAAATTTCTGCGTCACTTCACCGGAAAAAGATCTCTCGTTTYAGGGGAGAATTTTTTCCTTTTTGAAACTTTGAAAAAGCTTAGCCCCGCCCCTTTATCAATAGAGCGGATTTGCAAAGGTAAAAAAAACAAAACCTGTGAAAACGGTAAAAAGTGCTCACAAACTCGGTATGAAACCTCTGAAAACGCATTCAAAACAATGGATAAAACTGTTTCATTTGAAAATATATCGCAAAAGAACAAGAAAGAAATCATCGAATCGCACAAAAGAAATATATATATATATATATATATATATATAAATTCTATATGTCTGGAAATGGGAAAAACAAGCTCTGTGGGGGGTGGTTGGGTGGGTGTATCAGTGTTAAATTACTAGAATTTTCTAAATTTTTTGGGTGTTAAAAAGCGAAAAAAAAAGGTGGGGAGAAAATATGAAAAATGTGGGAAAATCATGGAAAATCATGGACAAAACCTCGGAAAATTGAGAGAAAAAAGGAGAGAGAAAGAGCTCTAGAATAGTGAAATTCACCAGAAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGATTCTCAAAAATCCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGTTTGTGAGCACTTTTTACC</pcr_primer_p2>
		<pcr_amplicon_size>346</pcr_amplicon_size>
		<canonical_amplicon>CAGATTCTCAAAAATCCAAAAAAATTCAAAATATTGGAATTTCGATTTTTTCGATTTTTACAAAATAAAAACGCACAGTGTTTGTTTTACTATCTTTGTGAATGCGCTTTAATGAGAACGCAGCCAAATTGATGGCTGAGGATCAAACTTTTCGTTTCGTTGTCTGCGTCTCTTCACCGAAAATTTCTGCGTCACTTCACCGGAAAAAGATCTCTCGTTTCAGGGGAGAATTTTTTCCTTTTTGAAACTTTGAAAAAGCTTAGCCCCGCCCCTTTATCAATAGAGCGGATTTGCAAAGGTAAAAAAAACAAAACCTGTGAAAACGGTAAAAAGTGCTCACAAACTC</canonical_amplicon>
		<polymorphic_amplicon>CAGATTCTCAAAAATCCAAAAAAATTCAAAATATTGGAATTTCGATTTTTTCGATTTTTACAAAATAAAAACGCACAGTGTTTGTTTTACTATCTTTGTGAATGCGCTTTAATGAGAACGCAGCCAAATTGATGGCTGAGGATCAAACTTTTCGTTTCGTTGTCTGCGTCTCTTCACCGAAAATTTCTGCGTCACTTCACCGGAAAAAGATCTCTCGTTTYAGGGGAGAATTTTTTCCTTTTTGAAACTTTGAAAAAGCTTAGCCCCGCCCCTTTATCAATAGAGCGGATTTGCAAAGGTAAAAAAAACAAAACCTGTGAAAACGGTAAAAAGTGCTCACAAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26432</snp_id>
        <super_contig>c002300808.Contig1</super_contig>
        <contig_pos>29385</contig_pos>
        <strand></strand>
        <context>CCTCTGAAAA[C/A]GCATTCAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TGTGAAAACGGTAAAAAGTGCTCACAAACTCGGTATGAAACCTCTGAAAA</left_flank>
        <right_flank>GCATTCAAAACAATGGATAAAACTGTTTCATTTGAAAATATATCGCAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACGTCATAGTTGCCAAATATTAAAGTTGCGAAATGTCAAAGCTACGAAATGCCCTATTTGGGAAACTTCCTAGTTGCGAAATGTCTTATAGTTAGTTGCAAATCGTTTCGAAAGTTAGTTTGTCAGAGATTTCAGATTCTCAAAAATCCAAAAAAATTCAAAATATTGGAATTTCGATTTTTTCGATTTTTACAAAATAAAAACGCACAGTGTTTGTTTTACTATCTTTGTGAATGCGCTTTAATGAGAACGCAGCCAAATTGATGGCTGAGGATCAAACTTTTCGTTTCGTTGTCTGCGTCTCTTCACCGAAAATTTCTGCGTCACTTCACCGGAAAAAGATCTCTCGTTTCAGGGGAGAATTTTTTCCTTTTTGAAACTTTGAAAAAGCTTAGCCCCGCCCCTTTATCAATAGAGCGGATTTGCAAAGGTAAAAAAAACAAAACCTGTGAAAACGGTAAAAAGTGCTCACAAACTCGGTATGAAACCTCTGAAAACGCATTCAAAACAATGGATAAAACTGTTTCATTTGAAAATATATCGCAAAAGAACAAGAAAGAAATCATCGAATCGCACAAAAGAAATATATATATATATATATATATATATATAAATTCTATATGTCTGGAAATGGGAAAAACAAGCTCTGTGGGGGGTGGTTGGGTGGGTGTATCAGTGTTAAATTACTAGAATTTTCTAAATTTTTTGGGTGTTAAAAAGCGAAAAAAAAAGGTGGGGAGAAAATATGAAAAATGTGGGAAAATCATGGAAAATCATGGACAAAACCTCGGAAAATTGAGAGAAAAAAGGAGAGAGAAAGAGCTCTAGAATAGTGAAATTCACCAGAAAAAAATGGATTTTCGAGAAAGAGAAAAGCTAGAAAAATGGGGAAAATCTATATAAATCTATATAAATCTATGCACACAAAAATGCCAAAAAAAATTACAGAAGAAGAAAAGCCGGAAAGGTGAAATCTTCAGAAAAATCGTTTAAAAAAT</canonical>
            <polymorphic>AAACGTCATAGTTGCCAAATATTAAAGTTGCGAAATGTCAAAGCTACGAAATGCCCTATTTGGGAAACTTCCTAGTTGCGAAATGTCTTATAGTTAGTTGCAAATCGTTTCGAAAGTTAGTTTGTCAGAGATTTCAGATTCTCAAAAATCCAAAAAAATTCAAAATATTGGAATTTCGATTTTTTCGATTTTTACAAAATAAAAACGCACAGTGTTTGTTTTACTATCTTTGTGAATGCGCTTTAATGAGAACGCAGCCAAATTGATGGCTGAGGATCAAACTTTTCGTTTCGTTGTCTGCGTCTCTTCACCGAAAATTTCTGCGTCACTTCACCGGAAAAAGATCTCTCGTTTCAGGGGAGAATTTTTTCCTTTTTGAAACTTTGAAAAAGCTTAGCCCCGCCCCTTTATCAATAGAGCGGATTTGCAAAGGTAAAAAAAACAAAACCTGTGAAAACGGTAAAAAGTGCTCACAAACTCGGTATGAAACCTCTGAAAAMGCATTCAAAACAATGGATAAAACTGTTTCATTTGAAAATATATCGCAAAAGAACAAGAAAGAAATCATCGAATCGCACAAAAGAAATATATATATATATATATATATATATATAAATTCTATATGTCTGGAAATGGGAAAAACAAGCTCTGTGGGGGGTGGTTGGGTGGGTGTATCAGTGTTAAATTACTAGAATTTTCTAAATTTTTTGGGTGTTAAAAAGCGAAAAAAAAAGGTGGGGAGAAAATATGAAAAATGTGGGAAAATCATGGAAAATCATGGACAAAACCTCGGAAAATTGAGAGAAAAAAGGAGAGAGAAAGAGCTCTAGAATAGTGAAATTCACCAGAAAAAAATGGATTTTCGAGAAAGAGAAAAGCTAGAAAAATGGGGAAAATCTATATAAATCTATATAAATCTATGCACACAAAAATGCCAAAAAAAATTACAGAAGAAGAAAAGCCGGAAAGGTGAAATCTTCAGAAAAATCGTTTAAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGATTCTCAAAAATCCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGTTCTTTTGCGATATATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>422</pcr_amplicon_size>
		<canonical_amplicon>CAGATTCTCAAAAATCCAAAAAAATTCAAAATATTGGAATTTCGATTTTTTCGATTTTTACAAAATAAAAACGCACAGTGTTTGTTTTACTATCTTTGTGAATGCGCTTTAATGAGAACGCAGCCAAATTGATGGCTGAGGATCAAACTTTTCGTTTCGTTGTCTGCGTCTCTTCACCGAAAATTTCTGCGTCACTTCACCGGAAAAAGATCTCTCGTTTCAGGGGAGAATTTTTTCCTTTTTGAAACTTTGAAAAAGCTTAGCCCCGCCCCTTTATCAATAGAGCGGATTTGCAAAGGTAAAAAAAACAAAACCTGTGAAAACGGTAAAAAGTGCTCACAAACTCGGTATGAAACCTCTGAAAACGCATTCAAAACAATGGATAAAACTGTTTCATTTGAAAATATATCGCAAAAGAACAA</canonical_amplicon>
		<polymorphic_amplicon>CAGATTCTCAAAAATCCAAAAAAATTCAAAATATTGGAATTTCGATTTTTTCGATTTTTACAAAATAAAAACGCACAGTGTTTGTTTTACTATCTTTGTGAATGCGCTTTAATGAGAACGCAGCCAAATTGATGGCTGAGGATCAAACTTTTCGTTTCGTTGTCTGCGTCTCTTCACCGAAAATTTCTGCGTCACTTCACCGGAAAAAGATCTCTCGTTTCAGGGGAGAATTTTTTCCTTTTTGAAACTTTGAAAAAGCTTAGCCCCGCCCCTTTATCAATAGAGCGGATTTGCAAAGGTAAAAAAAACAAAACCTGTGAAAACGGTAAAAAGTGCTCACAAACTCGGTATGAAACCTCTGAAAAMGCATTCAAAACAATGGATAAAACTGTTTCATTTGAAAATATATCGCAAAAGAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26436</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>34049</contig_pos>
        <strand></strand>
        <context>ccataacttt[C/G]ttaaatttca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTT</left_flank>
        <right_flank>TTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAAGAATTCGGATAAATGACAACGAGTACTATTTGAAACGGCTTGACGGGAATTCAAAAGACACCGAATTGGGAAAATTGGCTCAATGGGATATGGAGAGTGAGGGTGAACTTTTGCCAGGCGATTTTTGTATTGGAAATCCCCAAAACTACATTTTCAATCGAAATTTTCCAATGGAAAATGCTCCTTTTCCATGGACCACAGAGCTCCGGGTGACACAATTTAAAGGCGCATACAGTATGCCTGTGGATATCTCATTGGGATTCTTGGCTCCAATTTGGGATACTGCTCCAATCCACGTGGCATTCAAAAAATTGGTTTTTGACCTACTTGGAAATCGGCCTATGATATTTACAAAGAAATTCGAATTTCTGAAGATCACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATA</canonical>
            <polymorphic>TGGAAGAATTCGGATAAATGACAACGAGTACTATTTGAAACGGCTTGACGGGAATTCAAAAGACACCGAATTGGGAAAATTGGCTCAATGGGATATGGAGAGTGAGGGTGAACTTTTGCCAGGCGATTTTTGTATTGGAAATCCCCAAAACTACATTTTCAATCGAAATTTTCCAATGGAAAATGCTCCTTTTCCATGGACCACAGAGCTCCGGGTGACACAATTTAAAGGCGCATACAGTATGCCTGTGGATATCTCATTGGGATTCTTGGCTCCAATTTGGGATACTGCTCCAATCCACGTGGCATTCAAAAAATTGGTTTTTGACCTACTTGGAAATCGGCCTATGATATTTACAAAGAAATTCGAATTTCTGAAGATCACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTSTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTGGTTCTCTTTCAGCTATG</pcr_primer_p1>
		<pcr_primer_p2>AAGAATCAGAATATAACGCAACA</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>GTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTT</canonical_amplicon>
		<polymorphic_amplicon>GTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTSTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26437</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>34080</contig_pos>
        <strand></strand>
        <context>aaaattaaat[T/G]gtattgaatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAAT</left_flank>
        <right_flank>GTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACAC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTGAAACGGCTTGACGGGAATTCAAAAGACACCGAATTGGGAAAATTGGCTCAATGGGATATGGAGAGTGAGGGTGAACTTTTGCCAGGCGATTTTTGTATTGGAAATCCCCAAAACTACATTTTCAATCGAAATTTTCCAATGGAAAATGCTCCTTTTCCATGGACCACAGAGCTCCGGGTGACACAATTTAAAGGCGCATACAGTATGCCTGTGGATATCTCATTGGGATTCTTGGCTCCAATTTGGGATACTGCTCCAATCCACGTGGCATTCAAAAAATTGGTTTTTGACCTACTTGGAAATCGGCCTATGATATTTACAAAGAAATTCGAATTTCTGAAGATCACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTC</canonical>
            <polymorphic>TATTTGAAACGGCTTGACGGGAATTCAAAAGACACCGAATTGGGAAAATTGGCTCAATGGGATATGGAGAGTGAGGGTGAACTTTTGCCAGGCGATTTTTGTATTGGAAATCCCCAAAACTACATTTTCAATCGAAATTTTCCAATGGAAAATGCTCCTTTTCCATGGACCACAGAGCTCCGGGTGACACAATTTAAAGGCGCATACAGTATGCCTGTGGATATCTCATTGGGATTCTTGGCTCCAATTTGGGATACTGCTCCAATCCACGTGGCATTCAAAAAATTGGTTTTTGACCTACTTGGAAATCGGCCTATGATATTTACAAAGAAATTCGAATTTCTGAAGATCACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATKGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>318 89 80 62 55 55 48 46 38 28 28 27 21 16 15 14 11 11 10 9 8 6 5</canonical_bands>
                <polymorphic_bands>318 89 80 62 55 55 48 46 38 28 28 27 21 16 15 15 14 11 11 9 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGCTATGGTGAGAAATAGA</pcr_primer_p1>
		<pcr_primer_p2>AAGAATCAGAATATAACGCAACA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATKGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26438</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>34126</contig_pos>
        <strand></strand>
        <context>acctaaacac[A/G]acacactttg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACAC</left_flank>
        <right_flank>ACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGGCTCAATGGGATATGGAGAGTGAGGGTGAACTTTTGCCAGGCGATTTTTGTATTGGAAATCCCCAAAACTACATTTTCAATCGAAATTTTCCAATGGAAAATGCTCCTTTTCCATGGACCACAGAGCTCCGGGTGACACAATTTAAAGGCGCATACAGTATGCCTGTGGATATCTCATTGGGATTCTTGGCTCCAATTTGGGATACTGCTCCAATCCACGTGGCATTCAAAAAATTGGTTTTTGACCTACTTGGAAATCGGCCTATGATATTTACAAAGAAATTCGAATTTCTGAAGATCACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTT</canonical>
            <polymorphic>AATTGGCTCAATGGGATATGGAGAGTGAGGGTGAACTTTTGCCAGGCGATTTTTGTATTGGAAATCCCCAAAACTACATTTTCAATCGAAATTTTCCAATGGAAAATGCTCCTTTTCCATGGACCACAGAGCTCCGGGTGACACAATTTAAAGGCGCATACAGTATGCCTGTGGATATCTCATTGGGATTCTTGGCTCCAATTTGGGATACTGCTCCAATCCACGTGGCATTCAAAAAATTGGTTTTTGACCTACTTGGAAATCGGCCTATGATATTTACAAAGAAATTCGAATTTCTGAAGATCACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACRACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGCTATGGTGAGAAATAGA</pcr_primer_p1>
		<pcr_primer_p2>AAGAATCAGAATATAACGCAACA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACRACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26439</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>34349</contig_pos>
        <strand>+</strand>
        <context>ctttgagctt[C/T]raartgagcc</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTT</left_flank>
        <right_flank>GAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTGGCATTCAAAAAATTGGTTTTTGACCTACTTGGAAATCGGCCTATGATATTTACAAAGAAATTCGAATTTCTGAAGATCACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTTTTAATTTTATTGAATTTTGCATGTCTAGACCATTGAAATGAGCCTAAACAATGCATGTTTTGGAGAATTCTGAAATTTTCGAATTTTCGAGTTTTGCCATGCGCCTTTAAACCGGAAAACTCAAAGTTGTTCAAAATGGGTCGTGCTTGGGCTGATTTTGAAGCTCTTGTTGCGCGATATTTAGATTTCTGAGATTCAGAGCTTCAAAATGAGCCTAATCATG</canonical>
            <polymorphic>CGTGGCATTCAAAAAATTGGTTTTTGACCTACTTGGAAATCGGCCTATGATATTTACAAAGAAATTCGAATTTCTGAAGATCACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTYGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTTTTAATTTTATTGAATTTTGCATGTCTAGACCATTGAAATGAGCCTAAACAATGCATGTTTTGGAGAATTCTGAAATTTTCGAATTTTCGAGTTTTGCCATGCGCCTTTAAACCGGAAAACTCAAAGTTGTTCAAAATGGGTCGTGCTTGGGCTGATTTTGAAGCTCTTGTTGCGCGATATTTAGATTTCTGAGATTCAGAGCTTCAAAATGAGCCTAATCATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCGTTATATTCTGATTCTTGA</pcr_primer_p1>
		<pcr_primer_p2>TCGTTAACTATGGAGGTTAATCA</pcr_primer_p2>
		<pcr_amplicon_size>775</pcr_amplicon_size>
		<canonical_amplicon>TGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTA</canonical_amplicon>
		<polymorphic_amplicon>TGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTYGAAATGAGCCTAATCATGCCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26440</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>34350</contig_pos>
        <strand>+</strand>
        <context>tttgagctty[A/G]aartgagcct</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTT</left_flank>
        <right_flank>AAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGCATTCAAAAAATTGGTTTTTGACCTACTTGGAAATCGGCCTATGATATTTACAAAGAAATTCGAATTTCTGAAGATCACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTTTTAATTTTATTGAATTTTGCATGTCTAGACCATTGAAATGAGCCTAAACAATGCATGTTTTGGAGAATTCTGAAATTTTCGAATTTTCGAGTTTTGCCATGCGCCTTTAAACCGGAAAACTCAAAGTTGTTCAAAATGGGTCGTGCTTGGGCTGATTTTGAAGCTCTTGTTGCGCGATATTTAGATTTCTGAGATTCAGAGCTTCAAAATGAGCCTAATCATGT</canonical>
            <polymorphic>GTGGCATTCAAAAAATTGGTTTTTGACCTACTTGGAAATCGGCCTATGATATTTACAAAGAAATTCGAATTTCTGAAGATCACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTRAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTTTTAATTTTATTGAATTTTGCATGTCTAGACCATTGAAATGAGCCTAAACAATGCATGTTTTGGAGAATTCTGAAATTTTCGAATTTTCGAGTTTTGCCATGCGCCTTTAAACCGGAAAACTCAAAGTTGTTCAAAATGGGTCGTGCTTGGGCTGATTTTGAAGCTCTTGTTGCGCGATATTTAGATTTCTGAGATTCAGAGCTTCAAAATGAGCCTAATCATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCGTTATATTCTGATTCTTGA</pcr_primer_p1>
		<pcr_primer_p2>TCGTTAACTATGGAGGTTAATCA</pcr_primer_p2>
		<pcr_amplicon_size>775</pcr_amplicon_size>
		<canonical_amplicon>TGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAG</canonical_amplicon>
		<polymorphic_amplicon>TGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTRAAATGAGCCTAATCATGCCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26441</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>34353</contig_pos>
        <strand>+</strand>
        <context>gagcttyraa[A/G]tgagcctaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAA</left_flank>
        <right_flank>TGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATTCAAAAAATTGGTTTTTGACCTACTTGGAAATCGGCCTATGATATTTACAAAGAAATTCGAATTTCTGAAGATCACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTTTTAATTTTATTGAATTTTGCATGTCTAGACCATTGAAATGAGCCTAAACAATGCATGTTTTGGAGAATTCTGAAATTTTCGAATTTTCGAGTTTTGCCATGCGCCTTTAAACCGGAAAACTCAAAGTTGTTCAAAATGGGTCGTGCTTGGGCTGATTTTGAAGCTCTTGTTGCGCGATATTTAGATTTCTGAGATTCAGAGCTTCAAAATGAGCCTAATCATGTCAA</canonical>
            <polymorphic>GCATTCAAAAAATTGGTTTTTGACCTACTTGGAAATCGGCCTATGATATTTACAAAGAAATTCGAATTTCTGAAGATCACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAARTGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTTTTAATTTTATTGAATTTTGCATGTCTAGACCATTGAAATGAGCCTAAACAATGCATGTTTTGGAGAATTCTGAAATTTTCGAATTTTCGAGTTTTGCCATGCGCCTTTAAACCGGAAAACTCAAAGTTGTTCAAAATGGGTCGTGCTTGGGCTGATTTTGAAGCTCTTGTTGCGCGATATTTAGATTTCTGAGATTCAGAGCTTCAAAATGAGCCTAATCATGTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCGTTATATTCTGATTCTTGA</pcr_primer_p1>
		<pcr_primer_p2>TCGTTAACTATGGAGGTTAATCA</pcr_primer_p2>
		<pcr_amplicon_size>775</pcr_amplicon_size>
		<canonical_amplicon>TGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAAT</canonical_amplicon>
		<polymorphic_amplicon>TGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAARTGAGCCTAATCATGCCTAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26442</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>34364</contig_pos>
        <strand>+</strand>
        <context>tgagcctaat[C/G]atgcctagaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAAT</left_flank>
        <right_flank>ATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGGTTTTTGACCTACTTGGAAATCGGCCTATGATATTTACAAAGAAATTCGAATTTCTGAAGATCACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTTTTAATTTTATTGAATTTTGCATGTCTAGACCATTGAAATGAGCCTAAACAATGCATGTTTTGGAGAATTCTGAAATTTTCGAATTTTCGAGTTTTGCCATGCGCCTTTAAACCGGAAAACTCAAAGTTGTTCAAAATGGGTCGTGCTTGGGCTGATTTTGAAGCTCTTGTTGCGCGATATTTAGATTTCTGAGATTCAGAGCTTCAAAATGAGCCTAATCATGTCAAGAATCGGCCAA</canonical>
            <polymorphic>ATTGGTTTTTGACCTACTTGGAAATCGGCCTATGATATTTACAAAGAAATTCGAATTTCTGAAGATCACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATSATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTTTTAATTTTATTGAATTTTGCATGTCTAGACCATTGAAATGAGCCTAAACAATGCATGTTTTGGAGAATTCTGAAATTTTCGAATTTTCGAGTTTTGCCATGCGCCTTTAAACCGGAAAACTCAAAGTTGTTCAAAATGGGTCGTGCTTGGGCTGATTTTGAAGCTCTTGTTGCGCGATATTTAGATTTCTGAGATTCAGAGCTTCAAAATGAGCCTAATCATGTCAAGAATCGGCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>308 282 192 122 44 34 18</canonical_bands>
                <polymorphic_bands>474 308 122 44 34 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCGTTATATTCTGATTCTTGA</pcr_primer_p1>
		<pcr_primer_p2>TCGTTAACTATGGAGGTTAATCA</pcr_primer_p2>
		<pcr_amplicon_size>775</pcr_amplicon_size>
		<canonical_amplicon>TGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTT</canonical_amplicon>
		<polymorphic_amplicon>TGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATSATGCCTAGAATCGGTCAACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26443</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>34385</contig_pos>
        <strand>+</strand>
        <context>tcggtcaact[G/T]tcatatttga</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACT</left_flank>
        <right_flank>TCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCGGCCTATGATATTTACAAAGAAATTCGAATTTCTGAAGATCACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTTTTAATTTTATTGAATTTTGCATGTCTAGACCATTGAAATGAGCCTAAACAATGCATGTTTTGGAGAATTCTGAAATTTTCGAATTTTCGAGTTTTGCCATGCGCCTTTAAACCGGAAAACTCAAAGTTGTTCAAAATGGGTCGTGCTTGGGCTGATTTTGAAGCTCTTGTTGCGCGATATTTAGATTTCTGAGATTCAGAGCTTCAAAATGAGCCTAATCATGTCAAGAATCGGCCAACTATCACATTTGAAGCCTAAC</canonical>
            <polymorphic>AAATCGGCCTATGATATTTACAAAGAAATTCGAATTTCTGAAGATCACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTKTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTTTTAATTTTATTGAATTTTGCATGTCTAGACCATTGAAATGAGCCTAAACAATGCATGTTTTGGAGAATTCTGAAATTTTCGAATTTTCGAGTTTTGCCATGCGCCTTTAAACCGGAAAACTCAAAGTTGTTCAAAATGGGTCGTGCTTGGGCTGATTTTGAAGCTCTTGTTGCGCGATATTTAGATTTCTGAGATTCAGAGCTTCAAAATGAGCCTAATCATGTCAAGAATCGGCCAACTATCACATTTGAAGCCTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCGTTATATTCTGATTCTTGA</pcr_primer_p1>
		<pcr_primer_p2>TCGTTAACTATGGAGGTTAATCA</pcr_primer_p2>
		<pcr_amplicon_size>775</pcr_amplicon_size>
		<canonical_amplicon>TGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGC</canonical_amplicon>
		<polymorphic_amplicon>TGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTKTCATATTTGATACCTAACACGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26444</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>34397</contig_pos>
        <strand>+</strand>
        <context>catatttgat[A/G]cctracrcgs</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGAT</left_flank>
        <right_flank>CCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATATTTACAAAGAAATTCGAATTTCTGAAGATCACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTTTTAATTTTATTGAATTTTGCATGTCTAGACCATTGAAATGAGCCTAAACAATGCATGTTTTGGAGAATTCTGAAATTTTCGAATTTTCGAGTTTTGCCATGCGCCTTTAAACCGGAAAACTCAAAGTTGTTCAAAATGGGTCGTGCTTGGGCTGATTTTGAAGCTCTTGTTGCGCGATATTTAGATTTCTGAGATTCAGAGCTTCAAAATGAGCCTAATCATGTCAAGAATCGGCCAACTATCACATTTGAAGCCTAACACGCGACGCACG</canonical>
            <polymorphic>GATATTTACAAAGAAATTCGAATTTCTGAAGATCACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATRCCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTTTTAATTTTATTGAATTTTGCATGTCTAGACCATTGAAATGAGCCTAAACAATGCATGTTTTGGAGAATTCTGAAATTTTCGAATTTTCGAGTTTTGCCATGCGCCTTTAAACCGGAAAACTCAAAGTTGTTCAAAATGGGTCGTGCTTGGGCTGATTTTGAAGCTCTTGTTGCGCGATATTTAGATTTCTGAGATTCAGAGCTTCAAAATGAGCCTAATCATGTCAAGAATCGGCCAACTATCACATTTGAAGCCTAACACGCGACGCACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCGTTATATTCTGATTCTTGA</pcr_primer_p1>
		<pcr_primer_p2>TCGTTAACTATGGAGGTTAATCA</pcr_primer_p2>
		<pcr_amplicon_size>775</pcr_amplicon_size>
		<canonical_amplicon>TGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCG</canonical_amplicon>
		<polymorphic_amplicon>TGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATRCCTAACACGCGACGCACGACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26445</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>34401</contig_pos>
        <strand>+</strand>
        <context>tttgatrcct[A/G]acrcgsgacr</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCT</left_flank>
        <right_flank>ACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTACAAAGAAATTCGAATTTCTGAAGATCACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTTTTAATTTTATTGAATTTTGCATGTCTAGACCATTGAAATGAGCCTAAACAATGCATGTTTTGGAGAATTCTGAAATTTTCGAATTTTCGAGTTTTGCCATGCGCCTTTAAACCGGAAAACTCAAAGTTGTTCAAAATGGGTCGTGCTTGGGCTGATTTTGAAGCTCTTGTTGCGCGATATTTAGATTTCTGAGATTCAGAGCTTCAAAATGAGCCTAATCATGTCAAGAATCGGCCAACTATCACATTTGAAGCCTAACACGCGACGCACGACCG</canonical>
            <polymorphic>TTTACAAAGAAATTCGAATTTCTGAAGATCACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTRACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTTTTAATTTTATTGAATTTTGCATGTCTAGACCATTGAAATGAGCCTAAACAATGCATGTTTTGGAGAATTCTGAAATTTTCGAATTTTCGAGTTTTGCCATGCGCCTTTAAACCGGAAAACTCAAAGTTGTTCAAAATGGGTCGTGCTTGGGCTGATTTTGAAGCTCTTGTTGCGCGATATTTAGATTTCTGAGATTCAGAGCTTCAAAATGAGCCTAATCATGTCAAGAATCGGCCAACTATCACATTTGAAGCCTAACACGCGACGCACGACCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCGTTATATTCTGATTCTTGA</pcr_primer_p1>
		<pcr_primer_p2>TCGTTAACTATGGAGGTTAATCA</pcr_primer_p2>
		<pcr_amplicon_size>775</pcr_amplicon_size>
		<canonical_amplicon>TGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGAC</canonical_amplicon>
		<polymorphic_amplicon>TGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTRACACGCGACGCACGACCGCGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26446</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>34404</contig_pos>
        <strand>+</strand>
        <context>gatrcctrac[A/G]cgsgacrsas</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAAC</left_flank>
        <right_flank>CGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAAAGAAATTCGAATTTCTGAAGATCACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTTTTAATTTTATTGAATTTTGCATGTCTAGACCATTGAAATGAGCCTAAACAATGCATGTTTTGGAGAATTCTGAAATTTTCGAATTTTCGAGTTTTGCCATGCGCCTTTAAACCGGAAAACTCAAAGTTGTTCAAAATGGGTCGTGCTTGGGCTGATTTTGAAGCTCTTGTTGCGCGATATTTAGATTTCTGAGATTCAGAGCTTCAAAATGAGCCTAATCATGTCAAGAATCGGCCAACTATCACATTTGAAGCCTAACACGCGACGCACGACCGCGA</canonical>
            <polymorphic>ACAAAGAAATTCGAATTTCTGAAGATCACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACRCGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTTTTAATTTTATTGAATTTTGCATGTCTAGACCATTGAAATGAGCCTAAACAATGCATGTTTTGGAGAATTCTGAAATTTTCGAATTTTCGAGTTTTGCCATGCGCCTTTAAACCGGAAAACTCAAAGTTGTTCAAAATGGGTCGTGCTTGGGCTGATTTTGAAGCTCTTGTTGCGCGATATTTAGATTTCTGAGATTCAGAGCTTCAAAATGAGCCTAATCATGTCAAGAATCGGCCAACTATCACATTTGAAGCCTAACACGCGACGCACGACCGCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>282 134 102 100 99 90 39 34 28 24 16 13 9 9 9 5 5 2</canonical_bands>
                <polymorphic_bands>282 134 109 102 99 90 39 34 28 24 16 13 9 9 5 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCGTTATATTCTGATTCTTGA</pcr_primer_p1>
		<pcr_primer_p2>TCGTTAACTATGGAGGTTAATCA</pcr_primer_p2>
		<pcr_amplicon_size>775</pcr_amplicon_size>
		<canonical_amplicon>TGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCA</canonical_amplicon>
		<polymorphic_amplicon>TGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACRCGCGACGCACGACCGCGACGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26447</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>34407</contig_pos>
        <strand>+</strand>
        <context>rcctracrcg[C/G]gacrsasgac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACG</left_flank>
        <right_flank>GACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTC</right_flank>
        <qual_score>28</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAAATTCGAATTTCTGAAGATCACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTTTTAATTTTATTGAATTTTGCATGTCTAGACCATTGAAATGAGCCTAAACAATGCATGTTTTGGAGAATTCTGAAATTTTCGAATTTTCGAGTTTTGCCATGCGCCTTTAAACCGGAAAACTCAAAGTTGTTCAAAATGGGTCGTGCTTGGGCTGATTTTGAAGCTCTTGTTGCGCGATATTTAGATTTCTGAGATTCAGAGCTTCAAAATGAGCCTAATCATGTCAAGAATCGGCCAACTATCACATTTGAAGCCTAACACGCGACGCACGACCGCGACGC</canonical>
            <polymorphic>AAGAAATTCGAATTTCTGAAGATCACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGSGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTTTTAATTTTATTGAATTTTGCATGTCTAGACCATTGAAATGAGCCTAAACAATGCATGTTTTGGAGAATTCTGAAATTTTCGAATTTTCGAGTTTTGCCATGCGCCTTTAAACCGGAAAACTCAAAGTTGTTCAAAATGGGTCGTGCTTGGGCTGATTTTGAAGCTCTTGTTGCGCGATATTTAGATTTCTGAGATTCAGAGCTTCAAAATGAGCCTAATCATGTCAAGAATCGGCCAACTATCACATTTGAAGCCTAACACGCGACGCACGACCGCGACGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 381 88 13 13 6</canonical_bands>
                <polymorphic_bands>512 381 88 13 6</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>504 469 13 13 1</canonical_bands>
                <polymorphic_bands>517 469 13 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCGTTATATTCTGATTCTTGA</pcr_primer_p1>
		<pcr_primer_p2>TCGTTAACTATGGAGGTTAATCA</pcr_primer_p2>
		<pcr_amplicon_size>775</pcr_amplicon_size>
		<canonical_amplicon>TGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCC</canonical_amplicon>
		<polymorphic_amplicon>TGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGSGACGCACGACCGCGACGCACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26448</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>34411</contig_pos>
        <strand>+</strand>
        <context>racrcgsgac[A/G]sasgaccgcg</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGAC</left_flank>
        <right_flank>CACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTCGAATTTCTGAAGATCACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTTTTAATTTTATTGAATTTTGCATGTCTAGACCATTGAAATGAGCCTAAACAATGCATGTTTTGGAGAATTCTGAAATTTTCGAATTTTCGAGTTTTGCCATGCGCCTTTAAACCGGAAAACTCAAAGTTGTTCAAAATGGGTCGTGCTTGGGCTGATTTTGAAGCTCTTGTTGCGCGATATTTAGATTTCTGAGATTCAGAGCTTCAAAATGAGCCTAATCATGTCAAGAATCGGCCAACTATCACATTTGAAGCCTAACACGCGACGCACGACCGCGACGCGCCT</canonical>
            <polymorphic>AATTCGAATTTCTGAAGATCACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACRCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTTTTAATTTTATTGAATTTTGCATGTCTAGACCATTGAAATGAGCCTAAACAATGCATGTTTTGGAGAATTCTGAAATTTTCGAATTTTCGAGTTTTGCCATGCGCCTTTAAACCGGAAAACTCAAAGTTGTTCAAAATGGGTCGTGCTTGGGCTGATTTTGAAGCTCTTGTTGCGCGATATTTAGATTTCTGAGATTCAGAGCTTCAAAATGAGCCTAATCATGTCAAGAATCGGCCAACTATCACATTTGAAGCCTAACACGCGACGCACGACCGCGACGCGCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>500 469 13 13 5</canonical_bands>
                <polymorphic_bands>513 469 13 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCGTTATATTCTGATTCTTGA</pcr_primer_p1>
		<pcr_primer_p2>TCGTTAACTATGGAGGTTAATCA</pcr_primer_p2>
		<pcr_amplicon_size>775</pcr_amplicon_size>
		<canonical_amplicon>TGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAA</canonical_amplicon>
		<polymorphic_amplicon>TGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACRCACGACCGCGACGCACCCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26449</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>34412</contig_pos>
        <strand>+</strand>
        <context>acrcgsgacr[C/G]asgaccgcga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACG</left_flank>
        <right_flank>ACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCGAATTTCTGAAGATCACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTTTTAATTTTATTGAATTTTGCATGTCTAGACCATTGAAATGAGCCTAAACAATGCATGTTTTGGAGAATTCTGAAATTTTCGAATTTTCGAGTTTTGCCATGCGCCTTTAAACCGGAAAACTCAAAGTTGTTCAAAATGGGTCGTGCTTGGGCTGATTTTGAAGCTCTTGTTGCGCGATATTTAGATTTCTGAGATTCAGAGCTTCAAAATGAGCCTAATCATGTCAAGAATCGGCCAACTATCACATTTGAAGCCTAACACGCGACGCACGACCGCGACGCGCCTG</canonical>
            <polymorphic>ATTCGAATTTCTGAAGATCACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGSACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTTTTAATTTTATTGAATTTTGCATGTCTAGACCATTGAAATGAGCCTAAACAATGCATGTTTTGGAGAATTCTGAAATTTTCGAATTTTCGAGTTTTGCCATGCGCCTTTAAACCGGAAAACTCAAAGTTGTTCAAAATGGGTCGTGCTTGGGCTGATTTTGAAGCTCTTGTTGCGCGATATTTAGATTTCTGAGATTCAGAGCTTCAAAATGAGCCTAATCATGTCAAGAATCGGCCAACTATCACATTTGAAGCCTAACACGCGACGCACGACCGCGACGCGCCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>282 134 102 100 99 90 39 34 24 20 17 16 13 9 9 5 5 2</canonical_bands>
                <polymorphic_bands>282 134 102 100 99 90 39 34 24 22 20 17 16 9 5 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCGTTATATTCTGATTCTTGA</pcr_primer_p1>
		<pcr_primer_p2>TCGTTAACTATGGAGGTTAATCA</pcr_primer_p2>
		<pcr_amplicon_size>775</pcr_amplicon_size>
		<canonical_amplicon>TGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGSACGACCGCGACGCACCCGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26450</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>34414</contig_pos>
        <strand>+</strand>
        <context>rcgsgacrsa[C/G]gaccgcgacg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCA</left_flank>
        <right_flank>GACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAATTTCTGAAGATCACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTTTTAATTTTATTGAATTTTGCATGTCTAGACCATTGAAATGAGCCTAAACAATGCATGTTTTGGAGAATTCTGAAATTTTCGAATTTTCGAGTTTTGCCATGCGCCTTTAAACCGGAAAACTCAAAGTTGTTCAAAATGGGTCGTGCTTGGGCTGATTTTGAAGCTCTTGTTGCGCGATATTTAGATTTCTGAGATTCAGAGCTTCAAAATGAGCCTAATCATGTCAAGAATCGGCCAACTATCACATTTGAAGCCTAACACGCGACGCACGACCGCGACGCGCCTGAA</canonical>
            <polymorphic>TCGAATTTCTGAAGATCACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCASGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTTTTAATTTTATTGAATTTTGCATGTCTAGACCATTGAAATGAGCCTAAACAATGCATGTTTTGGAGAATTCTGAAATTTTCGAATTTTCGAGTTTTGCCATGCGCCTTTAAACCGGAAAACTCAAAGTTGTTCAAAATGGGTCGTGCTTGGGCTGATTTTGAAGCTCTTGTTGCGCGATATTTAGATTTCTGAGATTCAGAGCTTCAAAATGAGCCTAATCATGTCAAGAATCGGCCAACTATCACATTTGAAGCCTAACACGCGACGCACGACCGCGACGCGCCTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>503 309 173 15</canonical_bands>
                <polymorphic_bands>676 309 15</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>282 134 102 100 99 90 39 34 24 19 18 16 13 9 9 5 5 2</canonical_bands>
                <polymorphic_bands>282 134 102 100 99 90 39 34 24 22 19 18 16 9 5 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCGTTATATTCTGATTCTTGA</pcr_primer_p1>
		<pcr_primer_p2>TCGTTAACTATGGAGGTTAATCA</pcr_primer_p2>
		<pcr_amplicon_size>775</pcr_amplicon_size>
		<canonical_amplicon>TGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCASGACCGCGACGCACCCGAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26451</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>34425</contig_pos>
        <strand>+</strand>
        <context>gaccgcgacg[C/G]acccraaaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACG</left_flank>
        <right_flank>ACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGATCACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTTTTAATTTTATTGAATTTTGCATGTCTAGACCATTGAAATGAGCCTAAACAATGCATGTTTTGGAGAATTCTGAAATTTTCGAATTTTCGAGTTTTGCCATGCGCCTTTAAACCGGAAAACTCAAAGTTGTTCAAAATGGGTCGTGCTTGGGCTGATTTTGAAGCTCTTGTTGCGCGATATTTAGATTTCTGAGATTCAGAGCTTCAAAATGAGCCTAATCATGTCAAGAATCGGCCAACTATCACATTTGAAGCCTAACACGCGACGCACGACCGCGACGCGCCTGAAATATCAAAGTT</canonical>
            <polymorphic>AAGATCACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGSACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTTTTAATTTTATTGAATTTTGCATGTCTAGACCATTGAAATGAGCCTAAACAATGCATGTTTTGGAGAATTCTGAAATTTTCGAATTTTCGAGTTTTGCCATGCGCCTTTAAACCGGAAAACTCAAAGTTGTTCAAAATGGGTCGTGCTTGGGCTGATTTTGAAGCTCTTGTTGCGCGATATTTAGATTTCTGAGATTCAGAGCTTCAAAATGAGCCTAATCATGTCAAGAATCGGCCAACTATCACATTTGAAGCCTAACACGCGACGCACGACCGCGACGCGCCTGAAATATCAAAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>282 134 102 100 99 90 39 34 30 24 16 13 9 9 7 5 5 2</canonical_bands>
                <polymorphic_bands>282 134 102 100 99 90 47 39 30 24 16 9 9 7 5 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCGTTATATTCTGATTCTTGA</pcr_primer_p1>
		<pcr_primer_p2>TCGTTAACTATGGAGGTTAATCA</pcr_primer_p2>
		<pcr_amplicon_size>775</pcr_amplicon_size>
		<canonical_amplicon>TGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGC</canonical_amplicon>
		<polymorphic_amplicon>TGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGSACCCGAAAAACCAAAGGAGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26452</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>34430</contig_pos>
        <strand>+</strand>
        <context>cgacgsaccc[A/G]aaaaaccraa</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCC</left_flank>
        <right_flank>AAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTTTTAATTTTATTGAATTTTGCATGTCTAGACCATTGAAATGAGCCTAAACAATGCATGTTTTGGAGAATTCTGAAATTTTCGAATTTTCGAGTTTTGCCATGCGCCTTTAAACCGGAAAACTCAAAGTTGTTCAAAATGGGTCGTGCTTGGGCTGATTTTGAAGCTCTTGTTGCGCGATATTTAGATTTCTGAGATTCAGAGCTTCAAAATGAGCCTAATCATGTCAAGAATCGGCCAACTATCACATTTGAAGCCTAACACGCGACGCACGACCGCGACGCGCCTGAAATATCAAAGTTGAGCA</canonical>
            <polymorphic>CACAAGAGATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCRAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTTTTAATTTTATTGAATTTTGCATGTCTAGACCATTGAAATGAGCCTAAACAATGCATGTTTTGGAGAATTCTGAAATTTTCGAATTTTCGAGTTTTGCCATGCGCCTTTAAACCGGAAAACTCAAAGTTGTTCAAAATGGGTCGTGCTTGGGCTGATTTTGAAGCTCTTGTTGCGCGATATTTAGATTTCTGAGATTCAGAGCTTCAAAATGAGCCTAATCATGTCAAGAATCGGCCAACTATCACATTTGAAGCCTAACACGCGACGCACGACCGCGACGCGCCTGAAATATCAAAGTTGAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCGTTATATTCTGATTCTTGA</pcr_primer_p1>
		<pcr_primer_p2>TCGTTAACTATGGAGGTTAATCA</pcr_primer_p2>
		<pcr_amplicon_size>775</pcr_amplicon_size>
		<canonical_amplicon>TGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATC</canonical_amplicon>
		<polymorphic_amplicon>TGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCRAAAAACCAAAGGAGAGCAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26453</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>34438</contig_pos>
        <strand>+</strand>
        <context>ccraaaaacc[A/G]aagragagca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACC</left_flank>
        <right_flank>AAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTTTTAATTTTATTGAATTTTGCATGTCTAGACCATTGAAATGAGCCTAAACAATGCATGTTTTGGAGAATTCTGAAATTTTCGAATTTTCGAGTTTTGCCATGCGCCTTTAAACCGGAAAACTCAAAGTTGTTCAAAATGGGTCGTGCTTGGGCTGATTTTGAAGCTCTTGTTGCGCGATATTTAGATTTCTGAGATTCAGAGCTTCAAAATGAGCCTAATCATGTCAAGAATCGGCCAACTATCACATTTGAAGCCTAACACGCGACGCACGACCGCGACGCGCCTGAAATATCAAAGTTGAGCAAATCTAGG</canonical>
            <polymorphic>ATTCGAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCRAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTTTTAATTTTATTGAATTTTGCATGTCTAGACCATTGAAATGAGCCTAAACAATGCATGTTTTGGAGAATTCTGAAATTTTCGAATTTTCGAGTTTTGCCATGCGCCTTTAAACCGGAAAACTCAAAGTTGTTCAAAATGGGTCGTGCTTGGGCTGATTTTGAAGCTCTTGTTGCGCGATATTTAGATTTCTGAGATTCAGAGCTTCAAAATGAGCCTAATCATGTCAAGAATCGGCCAACTATCACATTTGAAGCCTAACACGCGACGCACGACCGCGACGCGCCTGAAATATCAAAGTTGAGCAAATCTAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCGTTATATTCTGATTCTTGA</pcr_primer_p1>
		<pcr_primer_p2>TCGTTAACTATGGAGGTTAATCA</pcr_primer_p2>
		<pcr_amplicon_size>775</pcr_amplicon_size>
		<canonical_amplicon>TGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTG</canonical_amplicon>
		<polymorphic_amplicon>TGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCRAAGGAGAGCAAATCTAGTCGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26454</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>34442</contig_pos>
        <strand>+</strand>
        <context>aaaaccraag[A/G]agagcaaatc</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAG</left_flank>
        <right_flank>AGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTTTTAATTTTATTGAATTTTGCATGTCTAGACCATTGAAATGAGCCTAAACAATGCATGTTTTGGAGAATTCTGAAATTTTCGAATTTTCGAGTTTTGCCATGCGCCTTTAAACCGGAAAACTCAAAGTTGTTCAAAATGGGTCGTGCTTGGGCTGATTTTGAAGCTCTTGTTGCGCGATATTTAGATTTCTGAGATTCAGAGCTTCAAAATGAGCCTAATCATGTCAAGAATCGGCCAACTATCACATTTGAAGCCTAACACGCGACGCACGACCGCGACGCGCCTGAAATATCAAAGTTGAGCAAATCTAGGCGTG</canonical>
            <polymorphic>GAAAATTTATCGATTGCCGCTGGAACTGAAAATTCAGGCGGAGACGTTGGAAACCGTTTGGTTCTCTTTCAGCTATGGTGAGAAATAGAAAATCGACCATAACTTTCTTAAATTTCAAAATTTCAAAAAAATTAAATTGTATTGAATTTGGCAAGTCTAGACAATCAAAATGAACCTAAACACAACACACTTTGAACAATATTGAAAATTTCAGACTTTCAAATTTCACCATGCGCCTTCAAACTGGAAAATTCAAAGTTGTCCAAAATGGGTCGTCATTAGGCTTATTTTGAAGCTCTTGTTGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGRAGAGCAAATCTAGTCGTGTTTGGGCTTATTCAGAAACTCGTGTTGTGCTGAGCAAAAAAATCATAAAAATTTTCAGTTAAAACTTCGAAAACGAATGAACATTTATAAAAAAAAATTTTCGAAAAATTCATATTTCTCAAAAATCGACCGTAACTTTCTTAAATTTCGAAAATTTCGAAAATTTTTAATTTTATTGAATTTTGCATGTCTAGACCATTGAAATGAGCCTAAACAATGCATGTTTTGGAGAATTCTGAAATTTTCGAATTTTCGAGTTTTGCCATGCGCCTTTAAACCGGAAAACTCAAAGTTGTTCAAAATGGGTCGTGCTTGGGCTGATTTTGAAGCTCTTGTTGCGCGATATTTAGATTTCTGAGATTCAGAGCTTCAAAATGAGCCTAATCATGTCAAGAATCGGCCAACTATCACATTTGAAGCCTAACACGCGACGCACGACCGCGACGCGCCTGAAATATCAAAGTTGAGCAAATCTAGGCGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCGTTATATTCTGATTCTTGA</pcr_primer_p1>
		<pcr_primer_p2>TCGTTAACTATGGAGGTTAATCA</pcr_primer_p2>
		<pcr_amplicon_size>775</pcr_amplicon_size>
		<canonical_amplicon>TGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGGAGAGCAAATCTAGTCGTGTTTG</canonical_amplicon>
		<polymorphic_amplicon>TGCGTTATATTCTGATTCTTGAGATTCAGAGATGCCTAAACTCAAAACTAGGTAGTTTCACAAGTTTGAAAATAATATTTTCAGCTTTTTGGGACTTTGAGCTTTGAAATGAGCCTAATCATGCCTAGAATCGGTCAACTTTCATATTTGATACCTAACACGCGACGCACGACCGCGACGCACCCGAAAAACCAAAGRAGAGCAAATCTAGTCGTGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26470</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>37568</contig_pos>
        <strand></strand>
        <context>cttataggaa[C/A]cgagatattc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TATCAGCAATATTTTAACAGTTTAAAAGTTTTTGCTATCTCTTATAGGAA</left_flank>
        <right_flank>CGAGATATTCAGGCTCAAATTTTATACACCAGTTGATTTTATAGAAGCCC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTGAAAATCCAAGAATCTGAAACTGCAGTTCCAGAACTTTTCGATCAAATGGGTCTGGAATTGAAATTTTGGGAAACTCGAAATCGAATCAAAAAATGGATCCGAAATGGGCGTTTTCGAATTCGCCAGATTCCTAGGAGAATTCGTCGGCGATATCGTCCCCTCTATAATTTTTTCCGTTATTGTAGCTATATGAAAAGTCTCGAATTTGGAATCCATTTTCGAAAAAAACGAATTTTTCTCTTGTCTTGTGAATTAACTCTTGTTCTTCTTGTCATTGGAATCCTAGGATATTTCTTGGTCCGTTGGATTTCCGGATTCTTTTTACATTGAAACAGTTTTCCCCCCTCTGATACAAGCCCACCCAACCCGCCAAATTCAAGGTTATATATCTCGTTTCCTGTGAAAGATACCGAAAAGTGGTCAACTGATAACACGTTTATCATATTATCAGCAATATTTTAACAGTTTAAAAGTTTTTGCTATCTCTTATAGGAACCGAGATATTCAGGCTCAAATTTTATACACCAGTTGATTTTATAGAAGCCCACCCAACCCGCCAACTTTGAGCCAAAATATCTTGGTTCCGGTAAAAGATACCAAAAAGTGATATACTAACAAAATATTTATCACATTATCAGCAATATTTTATTAGTTGACATTTTTTTGATATCTCTCACAGTAATCGAGATATTTGTGCTTAAAGATAACATATGCCGTAAACCCTAAAGTCACCCCAAACAATTTTGAGACCAAATTTCTCAGTTCCAAAACGTTGTCAACTAATAAAATATTGCTGATATAGTGATAAACATTTTATCAGTTGACAACTTTTTGATATCCTTTACAGGAACTATTTTTTTTGGTTCTTTGGGCTCAAAGATACCATGTACCGTAAACACTCCAAAAATAGTCCACTCAGGCCGTCAACTTTGAGCTTTAATATCTCAGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATGCTTATCA</canonical>
            <polymorphic>CCTGAAAATCCAAGAATCTGAAACTGCAGTTCCAGAACTTTTCGATCAAATGGGTCTGGAATTGAAATTTTGGGAAACTCGAAATCGAATCAAAAAATGGATCCGAAATGGGCGTTTTCGAATTCGCCAGATTCCTAGGAGAATTCGTCGGCGATATCGTCCCCTCTATAATTTTTTCCGTTATTGTAGCTATATGAAAAGTCTCGAATTTGGAATCCATTTTCGAAAAAAACGAATTTTTCTCTTGTCTTGTGAATTAACTCTTGTTCTTCTTGTCATTGGAATCCTAGGATATTTCTTGGTCCGTTGGATTTCCGGATTCTTTTTACATTGAAACAGTTTTCCCCCCTCTGATACAAGCCCACCCAACCCGCCAAATTCAAGGTTATATATCTCGTTTCCTGTGAAAGATACCGAAAAGTGGTCAACTGATAACACGTTTATCATATTATCAGCAATATTTTAACAGTTTAAAAGTTTTTGCTATCTCTTATAGGAAMCGAGATATTCAGGCTCAAATTTTATACACCAGTTGATTTTATAGAAGCCCACCCAACCCGCCAACTTTGAGCCAAAATATCTTGGTTCCGGTAAAAGATACCAAAAAGTGATATACTAACAAAATATTTATCACATTATCAGCAATATTTTATTAGTTGACATTTTTTTGATATCTCTCACAGTAATCGAGATATTTGTGCTTAAAGATAACATATGCCGTAAACCCTAAAGTCACCCCAAACAATTTTGAGACCAAATTTCTCAGTTCCAAAACGTTGTCAACTAATAAAATATTGCTGATATAGTGATAAACATTTTATCAGTTGACAACTTTTTGATATCCTTTACAGGAACTATTTTTTTTGGTTCTTTGGGCTCAAAGATACCATGTACCGTAAACACTCCAAAAATAGTCCACTCAGGCCGTCAACTTTGAGCTTTAATATCTCAGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATGCTTATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>414 397 101 88</canonical_bands>
                <polymorphic_bands>485 414 101</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGGATTCTTTTTACATTGA</pcr_primer_p1>
		<pcr_primer_p2>TCTGATTAAAACTAAATACCGTAGC</pcr_primer_p2>
		<pcr_amplicon_size>791</pcr_amplicon_size>
		<canonical_amplicon>CCGGATTCTTTTTACATTGAAACAGTTTTCCCCCCTCTGATACAAGCCCACCCAACCCGCCAAATTCAAGGTTATATATCTCGTTTCCTGTGAAAGATACCGAAAAGTGGTCAACTGATAACACGTTTATCATATTATCAGCAATATTTTAACAGTTTAAAAGTTTTTGCTATCTCTTATAGGAACCGAGATATTCAGGCTCAAATTTTA</canonical_amplicon>
		<polymorphic_amplicon>CCGGATTCTTTTTACATTGAAACAGTTTTCCCCCCTCTGATACAAGCCCACCCAACCCGCCAAATTCAAGGTTATATATCTCGTTTCCTGTGAAAGATACCGAAAAGTGGTCAACTGATAACACGTTTATCATATTATCAGCAATATTTTAACAGTTTAAAAGTTTTTGCTATCTCTTATAGGAAMCGAGATATTCAGGCTCAAATTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26471</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>37588</contig_pos>
        <strand></strand>
        <context>caggctcaaa[T/G]ttTATACACC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTTAAAAGTTTTTGCTATCTCTTATAGGAACCGAGATATTCAGGCTCAAA</left_flank>
        <right_flank>TTTATACACCAGTTGATTTTATAGAAGCCCACCCAACCCGCCAACTTTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTGCAGTTCCAGAACTTTTCGATCAAATGGGTCTGGAATTGAAATTTTGGGAAACTCGAAATCGAATCAAAAAATGGATCCGAAATGGGCGTTTTCGAATTCGCCAGATTCCTAGGAGAATTCGTCGGCGATATCGTCCCCTCTATAATTTTTTCCGTTATTGTAGCTATATGAAAAGTCTCGAATTTGGAATCCATTTTCGAAAAAAACGAATTTTTCTCTTGTCTTGTGAATTAACTCTTGTTCTTCTTGTCATTGGAATCCTAGGATATTTCTTGGTCCGTTGGATTTCCGGATTCTTTTTACATTGAAACAGTTTTCCCCCCTCTGATACAAGCCCACCCAACCCGCCAAATTCAAGGTTATATATCTCGTTTCCTGTGAAAGATACCGAAAAGTGGTCAACTGATAACACGTTTATCATATTATCAGCAATATTTTAACAGTTTAAAAGTTTTTGCTATCTCTTATAGGAACCGAGATATTCAGGCTCAAATTTTATACACCAGTTGATTTTATAGAAGCCCACCCAACCCGCCAACTTTGAGCCAAAATATCTTGGTTCCGGTAAAAGATACCAAAAAGTGATATACTAACAAAATATTTATCACATTATCAGCAATATTTTATTAGTTGACATTTTTTTGATATCTCTCACAGTAATCGAGATATTTGTGCTTAAAGATAACATATGCCGTAAACCCTAAAGTCACCCCAAACAATTTTGAGACCAAATTTCTCAGTTCCAAAACGTTGTCAACTAATAAAATATTGCTGATATAGTGATAAACATTTTATCAGTTGACAACTTTTTGATATCCTTTACAGGAACTATTTTTTTTGGTTCTTTGGGCTCAAAGATACCATGTACCGTAAACACTCCAAAAATAGTCCACTCAGGCCGTCAACTTTGAGCTTTAATATCTCAGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATGCTTATCATATTATCAGCAATATTTTAT</canonical>
            <polymorphic>AAACTGCAGTTCCAGAACTTTTCGATCAAATGGGTCTGGAATTGAAATTTTGGGAAACTCGAAATCGAATCAAAAAATGGATCCGAAATGGGCGTTTTCGAATTCGCCAGATTCCTAGGAGAATTCGTCGGCGATATCGTCCCCTCTATAATTTTTTCCGTTATTGTAGCTATATGAAAAGTCTCGAATTTGGAATCCATTTTCGAAAAAAACGAATTTTTCTCTTGTCTTGTGAATTAACTCTTGTTCTTCTTGTCATTGGAATCCTAGGATATTTCTTGGTCCGTTGGATTTCCGGATTCTTTTTACATTGAAACAGTTTTCCCCCCTCTGATACAAGCCCACCCAACCCGCCAAATTCAAGGTTATATATCTCGTTTCCTGTGAAAGATACCGAAAAGTGGTCAACTGATAACACGTTTATCATATTATCAGCAATATTTTAACAGTTTAAAAGTTTTTGCTATCTCTTATAGGAACCGAGATATTCAGGCTCAAAKTTTATACACCAGTTGATTTTATAGAAGCCCACCCAACCCGCCAACTTTGAGCCAAAATATCTTGGTTCCGGTAAAAGATACCAAAAAGTGATATACTAACAAAATATTTATCACATTATCAGCAATATTTTATTAGTTGACATTTTTTTGATATCTCTCACAGTAATCGAGATATTTGTGCTTAAAGATAACATATGCCGTAAACCCTAAAGTCACCCCAAACAATTTTGAGACCAAATTTCTCAGTTCCAAAACGTTGTCAACTAATAAAATATTGCTGATATAGTGATAAACATTTTATCAGTTGACAACTTTTTGATATCCTTTACAGGAACTATTTTTTTTGGTTCTTTGGGCTCAAAGATACCATGTACCGTAAACACTCCAAAAATAGTCCACTCAGGCCGTCAACTTTGAGCTTTAATATCTCAGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATGCTTATCATATTATCAGCAATATTTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>264 239 142 141 65 55 45 28 21</canonical_bands>
                <polymorphic_bands>380 264 142 65 55 45 28 21</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>264 226 141 122 55 39 37 28 28 21 20 13 6</canonical_bands>
                <polymorphic_bands>367 264 122 55 39 37 28 28 21 20 13 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGGATTCTTTTTACATTGA</pcr_primer_p1>
		<pcr_primer_p2>TCTGATTAAAACTAAATACCGTAGC</pcr_primer_p2>
		<pcr_amplicon_size>791</pcr_amplicon_size>
		<canonical_amplicon>CCGGATTCTTTTTACATTGAAACAGTTTTCCCCCCTCTGATACAAGCCCACCCAACCCGCCAAATTCAAGGTTATATATCTCGTTTCCTGTGAAAGATACCGAAAAGTGGTCAACTGATAACACGTTTATCATATTATCAGCAATATTTTAACAGTTTAAAAGTTTTTGCTATCTCTTATAGGAACCGAGATATTCAGGCTCAAATTTTATACACCAGTTGATTTTATAG</canonical_amplicon>
		<polymorphic_amplicon>CCGGATTCTTTTTACATTGAAACAGTTTTCCCCCCTCTGATACAAGCCCACCCAACCCGCCAAATTCAAGGTTATATATCTCGTTTCCTGTGAAAGATACCGAAAAGTGGTCAACTGATAACACGTTTATCATATTATCAGCAATATTTTAACAGTTTAAAAGTTTTTGCTATCTCTTATAGGAACCGAGATATTCAGGCTCAAAKTTTATACACCAGTTGATTTTATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26472</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>41549</contig_pos>
        <strand></strand>
        <context>atgtttttga[G/A]cttgaaaact</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGCTCATTTCAAAGCTAGAAACGTAAGGAATCTGAAAATGATGTTTTTGA</left_flank>
        <right_flank>CTTGAAAACTACTGAGTTAGGTGTGAAATTAGATTTTCAAAAATCTCGAA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAATCTGAAAATGATGTTTTTGAGTTTCTCACAAAGAGAGCTTCAAAAAAAGCCTAAACACGACTAGTTTCGCTCTACTTCGATTTTTCAGCCGCGTCGCGGTCGTGCGTCGCGTGTCAGCCATCAAATTTGAAAGTTGAGTGATTCTAGGCAAGATTAGGCTCATTTTGAAGCTAAGAATCTCAGAAATCTAAATACGTTAAAATCAAGCTAGAAAAAATACTCTGTTTTGAGTTCAGGCCTAAACTCGGATTTTCAGAGTTTCAAAAATTACAAATATCTCTTCTCAAACTTTACCAGGTTTTCTGAGGTTAAGTTTTTCGAGTTTATCATTTTGAGAGCTTCAAAATGAACCTAAACACGACTATATTTGCTGAACTTTGATTTTTTGGGTGCGTCGCGTGTTAGACATCAAATTTCAAAGTTGAGTGTTTCTAGGCAAGATTAGGCTCATTTCAAAGCTAGAAACGTAAGGAATCTGAAAATGATGTTTTTGAGCTTGAAAACTACTGAGTTAGGTGTGAAATTAGATTTTCAAAAATCTCGAAAACTGAAAGTTGATACATTCTAGACATTCTTAGGTTTATTTTAGAGCGCAAAACTTGAGGAATCTGATTTTCCAGTTGATACCGAGTGGGCGGAGGAACTGCACGTGATGGATGACGGAATTGGAATGAGTCGACAGGACATGCTCAATGTGATTCTATTTGGAAAAACCCAAAAAGGACCAGAATGCATTGGAAAATGGGGTAATGGACTGAAAACTGGAGGATGTTATCTGGGTCAGGACATGCTTGTGCTCTCCAAAAAGGATGGTGTTCATACGGCTCTGTTTTTGTCCCACTCGTTTTTGAATGCGGAGGGTTCGGAGCAGATCTATGTGCCAATCCCATCGAAGTATGCCGCTGGAGACCGATGTTGTCCAAGAGATGAGGATAAGAAAAGATGGAATTATGAAAATGAGGTCATTGCTCAGCACGCAGGGCTTACTGTACCCC</canonical>
            <polymorphic>AGGAATCTGAAAATGATGTTTTTGAGTTTCTCACAAAGAGAGCTTCAAAAAAAGCCTAAACACGACTAGTTTCGCTCTACTTCGATTTTTCAGCCGCGTCGCGGTCGTGCGTCGCGTGTCAGCCATCAAATTTGAAAGTTGAGTGATTCTAGGCAAGATTAGGCTCATTTTGAAGCTAAGAATCTCAGAAATCTAAATACGTTAAAATCAAGCTAGAAAAAATACTCTGTTTTGAGTTCAGGCCTAAACTCGGATTTTCAGAGTTTCAAAAATTACAAATATCTCTTCTCAAACTTTACCAGGTTTTCTGAGGTTAAGTTTTTCGAGTTTATCATTTTGAGAGCTTCAAAATGAACCTAAACACGACTATATTTGCTGAACTTTGATTTTTTGGGTGCGTCGCGTGTTAGACATCAAATTTCAAAGTTGAGTGTTTCTAGGCAAGATTAGGCTCATTTCAAAGCTAGAAACGTAAGGAATCTGAAAATGATGTTTTTGARCTTGAAAACTACTGAGTTAGGTGTGAAATTAGATTTTCAAAAATCTCGAAAACTGAAAGTTGATACATTCTAGACATTCTTAGGTTTATTTTAGAGCGCAAAACTTGAGGAATCTGATTTTCCAGTTGATACCGAGTGGGCGGAGGAACTGCACGTGATGGATGACGGAATTGGAATGAGTCGACAGGACATGCTCAATGTGATTCTATTTGGAAAAACCCAAAAAGGACCAGAATGCATTGGAAAATGGGGTAATGGACTGAAAACTGGAGGATGTTATCTGGGTCAGGACATGCTTGTGCTCTCCAAAAAGGATGGTGTTCATACGGCTCTGTTTTTGTCCCACTCGTTTTTGAATGCGGAGGGTTCGGAGCAGATCTATGTGCCAATCCCATCGAAGTATGCCGCTGGAGACCGATGTTGTCCAAGAGATGAGGATAAGAAAAGATGGAATTATGAAAATGAGGTCATTGCTCAGCACGCAGGGCTTACTGTACCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>500 133 131 120 42 37 37</canonical_bands>
                <polymorphic_bands>537 133 131 120 42 37</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>329 158 108 101 42 41 39 37 37 30 29 13 12 12 12</canonical_bands>
                <polymorphic_bands>366 158 108 101 42 41 39 37 30 29 13 12 12 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTGAAGAGGTGTTCTT</pcr_primer_p1>
		<pcr_primer_p2>CCTAAGAATGTCTAGAATGTATCAAC</pcr_primer_p2>
		<pcr_amplicon_size>900</pcr_amplicon_size>
		<canonical_amplicon>AGCTTGAAAACTACTGAGTTAGGTGTGAAATTAGATTTTCAAAAATCTCGAAAACTGAAAGTTGATACATTCTAGACATTCTTAGG</canonical_amplicon>
		<polymorphic_amplicon>ARCTTGAAAACTACTGAGTTAGGTGTGAAATTAGATTTTCAAAAATCTCGAAAACTGAAAGTTGATACATTCTAGACATTCTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26473</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>41560</contig_pos>
        <strand></strand>
        <context>cttgaaaact[A/G]ctsagttagg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGCTAGAAACGTAAGGAATCTGAAAATGATGTTTTTGAGCTTGAAAACT</left_flank>
        <right_flank>CTGAGTTAGGTGTGAAATTAGATTTTCAAAAATCTCGAAAACTGAAAGTT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGATGTTTTTGAGTTTCTCACAAAGAGAGCTTCAAAAAAAGCCTAAACACGACTAGTTTCGCTCTACTTCGATTTTTCAGCCGCGTCGCGGTCGTGCGTCGCGTGTCAGCCATCAAATTTGAAAGTTGAGTGATTCTAGGCAAGATTAGGCTCATTTTGAAGCTAAGAATCTCAGAAATCTAAATACGTTAAAATCAAGCTAGAAAAAATACTCTGTTTTGAGTTCAGGCCTAAACTCGGATTTTCAGAGTTTCAAAAATTACAAATATCTCTTCTCAAACTTTACCAGGTTTTCTGAGGTTAAGTTTTTCGAGTTTATCATTTTGAGAGCTTCAAAATGAACCTAAACACGACTATATTTGCTGAACTTTGATTTTTTGGGTGCGTCGCGTGTTAGACATCAAATTTCAAAGTTGAGTGTTTCTAGGCAAGATTAGGCTCATTTCAAAGCTAGAAACGTAAGGAATCTGAAAATGATGTTTTTGAGCTTGAAAACTACTGAGTTAGGTGTGAAATTAGATTTTCAAAAATCTCGAAAACTGAAAGTTGATACATTCTAGACATTCTTAGGTTTATTTTAGAGCGCAAAACTTGAGGAATCTGATTTTCCAGTTGATACCGAGTGGGCGGAGGAACTGCACGTGATGGATGACGGAATTGGAATGAGTCGACAGGACATGCTCAATGTGATTCTATTTGGAAAAACCCAAAAAGGACCAGAATGCATTGGAAAATGGGGTAATGGACTGAAAACTGGAGGATGTTATCTGGGTCAGGACATGCTTGTGCTCTCCAAAAAGGATGGTGTTCATACGGCTCTGTTTTTGTCCCACTCGTTTTTGAATGCGGAGGGTTCGGAGCAGATCTATGTGCCAATCCCATCGAAGTATGCCGCTGGAGACCGATGTTGTCCAAGAGATGAGGATAAGAAAAGATGGAATTATGAAAATGAGGTCATTGCTCAGCACGCAGGGCTTACTGTACCCCTTTGGGACATG</canonical>
            <polymorphic>AATGATGTTTTTGAGTTTCTCACAAAGAGAGCTTCAAAAAAAGCCTAAACACGACTAGTTTCGCTCTACTTCGATTTTTCAGCCGCGTCGCGGTCGTGCGTCGCGTGTCAGCCATCAAATTTGAAAGTTGAGTGATTCTAGGCAAGATTAGGCTCATTTTGAAGCTAAGAATCTCAGAAATCTAAATACGTTAAAATCAAGCTAGAAAAAATACTCTGTTTTGAGTTCAGGCCTAAACTCGGATTTTCAGAGTTTCAAAAATTACAAATATCTCTTCTCAAACTTTACCAGGTTTTCTGAGGTTAAGTTTTTCGAGTTTATCATTTTGAGAGCTTCAAAATGAACCTAAACACGACTATATTTGCTGAACTTTGATTTTTTGGGTGCGTCGCGTGTTAGACATCAAATTTCAAAGTTGAGTGTTTCTAGGCAAGATTAGGCTCATTTCAAAGCTAGAAACGTAAGGAATCTGAAAATGATGTTTTTGAGCTTGAAAACTRCTGAGTTAGGTGTGAAATTAGATTTTCAAAAATCTCGAAAACTGAAAGTTGATACATTCTAGACATTCTTAGGTTTATTTTAGAGCGCAAAACTTGAGGAATCTGATTTTCCAGTTGATACCGAGTGGGCGGAGGAACTGCACGTGATGGATGACGGAATTGGAATGAGTCGACAGGACATGCTCAATGTGATTCTATTTGGAAAAACCCAAAAAGGACCAGAATGCATTGGAAAATGGGGTAATGGACTGAAAACTGGAGGATGTTATCTGGGTCAGGACATGCTTGTGCTCTCCAAAAAGGATGGTGTTCATACGGCTCTGTTTTTGTCCCACTCGTTTTTGAATGCGGAGGGTTCGGAGCAGATCTATGTGCCAATCCCATCGAAGTATGCCGCTGGAGACCGATGTTGTCCAAGAGATGAGGATAAGAAAAGATGGAATTATGAAAATGAGGTCATTGCTCAGCACGCAGGGCTTACTGTACCCCTTTGGGACATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTGAAGAGGTGTTCTT</pcr_primer_p1>
		<pcr_primer_p2>CCTAAGAATGTCTAGAATGTATCAAC</pcr_primer_p2>
		<pcr_amplicon_size>900</pcr_amplicon_size>
		<canonical_amplicon>TACTGAGTTAGGTGTGAAATTAGATTTTCAAAAATCTCGAAAACTGAAAGTTGATACATTCTAGACATTCTTAGG</canonical_amplicon>
		<polymorphic_amplicon>TRCTGAGTTAGGTGTGAAATTAGATTTTCAAAAATCTCGAAAACTGAAAGTTGATACATTCTAGACATTCTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26474</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>41563</contig_pos>
        <strand></strand>
        <context>gaaaactrct[G/C]agttaggygt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CTAGAAACGTAAGGAATCTGAAAATGATGTTTTTGAGCTTGAAAACTACT</left_flank>
        <right_flank>AGTTAGGTGTGAAATTAGATTTTCAAAAATCTCGAAAACTGAAAGTTGAT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGTTTTTGAGTTTCTCACAAAGAGAGCTTCAAAAAAAGCCTAAACACGACTAGTTTCGCTCTACTTCGATTTTTCAGCCGCGTCGCGGTCGTGCGTCGCGTGTCAGCCATCAAATTTGAAAGTTGAGTGATTCTAGGCAAGATTAGGCTCATTTTGAAGCTAAGAATCTCAGAAATCTAAATACGTTAAAATCAAGCTAGAAAAAATACTCTGTTTTGAGTTCAGGCCTAAACTCGGATTTTCAGAGTTTCAAAAATTACAAATATCTCTTCTCAAACTTTACCAGGTTTTCTGAGGTTAAGTTTTTCGAGTTTATCATTTTGAGAGCTTCAAAATGAACCTAAACACGACTATATTTGCTGAACTTTGATTTTTTGGGTGCGTCGCGTGTTAGACATCAAATTTCAAAGTTGAGTGTTTCTAGGCAAGATTAGGCTCATTTCAAAGCTAGAAACGTAAGGAATCTGAAAATGATGTTTTTGAGCTTGAAAACTACTGAGTTAGGTGTGAAATTAGATTTTCAAAAATCTCGAAAACTGAAAGTTGATACATTCTAGACATTCTTAGGTTTATTTTAGAGCGCAAAACTTGAGGAATCTGATTTTCCAGTTGATACCGAGTGGGCGGAGGAACTGCACGTGATGGATGACGGAATTGGAATGAGTCGACAGGACATGCTCAATGTGATTCTATTTGGAAAAACCCAAAAAGGACCAGAATGCATTGGAAAATGGGGTAATGGACTGAAAACTGGAGGATGTTATCTGGGTCAGGACATGCTTGTGCTCTCCAAAAAGGATGGTGTTCATACGGCTCTGTTTTTGTCCCACTCGTTTTTGAATGCGGAGGGTTCGGAGCAGATCTATGTGCCAATCCCATCGAAGTATGCCGCTGGAGACCGATGTTGTCCAAGAGATGAGGATAAGAAAAGATGGAATTATGAAAATGAGGTCATTGCTCAGCACGCAGGGCTTACTGTACCCCTTTGGGACATGTTT</canonical>
            <polymorphic>GATGTTTTTGAGTTTCTCACAAAGAGAGCTTCAAAAAAAGCCTAAACACGACTAGTTTCGCTCTACTTCGATTTTTCAGCCGCGTCGCGGTCGTGCGTCGCGTGTCAGCCATCAAATTTGAAAGTTGAGTGATTCTAGGCAAGATTAGGCTCATTTTGAAGCTAAGAATCTCAGAAATCTAAATACGTTAAAATCAAGCTAGAAAAAATACTCTGTTTTGAGTTCAGGCCTAAACTCGGATTTTCAGAGTTTCAAAAATTACAAATATCTCTTCTCAAACTTTACCAGGTTTTCTGAGGTTAAGTTTTTCGAGTTTATCATTTTGAGAGCTTCAAAATGAACCTAAACACGACTATATTTGCTGAACTTTGATTTTTTGGGTGCGTCGCGTGTTAGACATCAAATTTCAAAGTTGAGTGTTTCTAGGCAAGATTAGGCTCATTTCAAAGCTAGAAACGTAAGGAATCTGAAAATGATGTTTTTGAGCTTGAAAACTACTSAGTTAGGTGTGAAATTAGATTTTCAAAAATCTCGAAAACTGAAAGTTGATACATTCTAGACATTCTTAGGTTTATTTTAGAGCGCAAAACTTGAGGAATCTGATTTTCCAGTTGATACCGAGTGGGCGGAGGAACTGCACGTGATGGATGACGGAATTGGAATGAGTCGACAGGACATGCTCAATGTGATTCTATTTGGAAAAACCCAAAAAGGACCAGAATGCATTGGAAAATGGGGTAATGGACTGAAAACTGGAGGATGTTATCTGGGTCAGGACATGCTTGTGCTCTCCAAAAAGGATGGTGTTCATACGGCTCTGTTTTTGTCCCACTCGTTTTTGAATGCGGAGGGTTCGGAGCAGATCTATGTGCCAATCCCATCGAAGTATGCCGCTGGAGACCGATGTTGTCCAAGAGATGAGGATAAGAAAAGATGGAATTATGAAAATGAGGTCATTGCTCAGCACGCAGGGCTTACTGTACCCCTTTGGGACATGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTGAAGAGGTGTTCTT</pcr_primer_p1>
		<pcr_primer_p2>CCTAAGAATGTCTAGAATGTATCAAC</pcr_primer_p2>
		<pcr_amplicon_size>900</pcr_amplicon_size>
		<canonical_amplicon>TGAGTTAGGTGTGAAATTAGATTTTCAAAAATCTCGAAAACTGAAAGTTGATACATTCTAGACATTCTTAGG</canonical_amplicon>
		<polymorphic_amplicon>TSAGTTAGGTGTGAAATTAGATTTTCAAAAATCTCGAAAACTGAAAGTTGATACATTCTAGACATTCTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26475</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>41571</contig_pos>
        <strand></strand>
        <context>ctsagttagg[T/C]gtgaaattag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTAAGGAATCTGAAAATGATGTTTTTGAGCTTGAAAACTACTGAGTTAGG</left_flank>
        <right_flank>GTGAAATTAGATTTTCAAAAATCTCGAAAACTGAAAGTTGATACATTCTA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGTTTCTCACAAAGAGAGCTTCAAAAAAAGCCTAAACACGACTAGTTTCGCTCTACTTCGATTTTTCAGCCGCGTCGCGGTCGTGCGTCGCGTGTCAGCCATCAAATTTGAAAGTTGAGTGATTCTAGGCAAGATTAGGCTCATTTTGAAGCTAAGAATCTCAGAAATCTAAATACGTTAAAATCAAGCTAGAAAAAATACTCTGTTTTGAGTTCAGGCCTAAACTCGGATTTTCAGAGTTTCAAAAATTACAAATATCTCTTCTCAAACTTTACCAGGTTTTCTGAGGTTAAGTTTTTCGAGTTTATCATTTTGAGAGCTTCAAAATGAACCTAAACACGACTATATTTGCTGAACTTTGATTTTTTGGGTGCGTCGCGTGTTAGACATCAAATTTCAAAGTTGAGTGTTTCTAGGCAAGATTAGGCTCATTTCAAAGCTAGAAACGTAAGGAATCTGAAAATGATGTTTTTGAGCTTGAAAACTACTGAGTTAGGTGTGAAATTAGATTTTCAAAAATCTCGAAAACTGAAAGTTGATACATTCTAGACATTCTTAGGTTTATTTTAGAGCGCAAAACTTGAGGAATCTGATTTTCCAGTTGATACCGAGTGGGCGGAGGAACTGCACGTGATGGATGACGGAATTGGAATGAGTCGACAGGACATGCTCAATGTGATTCTATTTGGAAAAACCCAAAAAGGACCAGAATGCATTGGAAAATGGGGTAATGGACTGAAAACTGGAGGATGTTATCTGGGTCAGGACATGCTTGTGCTCTCCAAAAAGGATGGTGTTCATACGGCTCTGTTTTTGTCCCACTCGTTTTTGAATGCGGAGGGTTCGGAGCAGATCTATGTGCCAATCCCATCGAAGTATGCCGCTGGAGACCGATGTTGTCCAAGAGATGAGGATAAGAAAAGATGGAATTATGAAAATGAGGTCATTGCTCAGCACGCAGGGCTTACTGTACCCCTTTGGGACATGTTTGATAGGAT</canonical>
            <polymorphic>TGAGTTTCTCACAAAGAGAGCTTCAAAAAAAGCCTAAACACGACTAGTTTCGCTCTACTTCGATTTTTCAGCCGCGTCGCGGTCGTGCGTCGCGTGTCAGCCATCAAATTTGAAAGTTGAGTGATTCTAGGCAAGATTAGGCTCATTTTGAAGCTAAGAATCTCAGAAATCTAAATACGTTAAAATCAAGCTAGAAAAAATACTCTGTTTTGAGTTCAGGCCTAAACTCGGATTTTCAGAGTTTCAAAAATTACAAATATCTCTTCTCAAACTTTACCAGGTTTTCTGAGGTTAAGTTTTTCGAGTTTATCATTTTGAGAGCTTCAAAATGAACCTAAACACGACTATATTTGCTGAACTTTGATTTTTTGGGTGCGTCGCGTGTTAGACATCAAATTTCAAAGTTGAGTGTTTCTAGGCAAGATTAGGCTCATTTCAAAGCTAGAAACGTAAGGAATCTGAAAATGATGTTTTTGAGCTTGAAAACTACTGAGTTAGGYGTGAAATTAGATTTTCAAAAATCTCGAAAACTGAAAGTTGATACATTCTAGACATTCTTAGGTTTATTTTAGAGCGCAAAACTTGAGGAATCTGATTTTCCAGTTGATACCGAGTGGGCGGAGGAACTGCACGTGATGGATGACGGAATTGGAATGAGTCGACAGGACATGCTCAATGTGATTCTATTTGGAAAAACCCAAAAAGGACCAGAATGCATTGGAAAATGGGGTAATGGACTGAAAACTGGAGGATGTTATCTGGGTCAGGACATGCTTGTGCTCTCCAAAAAGGATGGTGTTCATACGGCTCTGTTTTTGTCCCACTCGTTTTTGAATGCGGAGGGTTCGGAGCAGATCTATGTGCCAATCCCATCGAAGTATGCCGCTGGAGACCGATGTTGTCCAAGAGATGAGGATAAGAAAAGATGGAATTATGAAAATGAGGTCATTGCTCAGCACGCAGGGCTTACTGTACCCCTTTGGGACATGTTTGATAGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>218 113 99 95 90 47 45 42 40 34 29 27 27 25 19 15 11 9 9 4 2</canonical_bands>
                <polymorphic_bands>218 113 99 95 92 47 45 42 40 34 29 27 27 25 19 15 11 9 9 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTGAAGAGGTGTTCTT</pcr_primer_p1>
		<pcr_primer_p2>CCTAAGAATGTCTAGAATGTATCAAC</pcr_primer_p2>
		<pcr_amplicon_size>900</pcr_amplicon_size>
		<canonical_amplicon>GTGTGAAATTAGATTTTCAAAAATCTCGAAAACTGAAAGTTGATACATTCTAGACATTCTTAGG</canonical_amplicon>
		<polymorphic_amplicon>GYGTGAAATTAGATTTTCAAAAATCTCGAAAACTGAAAGTTGATACATTCTAGACATTCTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26476</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>41601</contig_pos>
        <strand>+</strand>
        <context>aatctcgaaa[C/T]ctgaaaGTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGAAAACTACTGAGTTAGGTGTGAAATTAGATTTTCAAAAATCTCGAAA</left_flank>
        <right_flank>CTGAAAGTTGATACATTCTAGACATTCTTAGGTTTATTTTAGAGCGCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCTAAACACGACTAGTTTCGCTCTACTTCGATTTTTCAGCCGCGTCGCGGTCGTGCGTCGCGTGTCAGCCATCAAATTTGAAAGTTGAGTGATTCTAGGCAAGATTAGGCTCATTTTGAAGCTAAGAATCTCAGAAATCTAAATACGTTAAAATCAAGCTAGAAAAAATACTCTGTTTTGAGTTCAGGCCTAAACTCGGATTTTCAGAGTTTCAAAAATTACAAATATCTCTTCTCAAACTTTACCAGGTTTTCTGAGGTTAAGTTTTTCGAGTTTATCATTTTGAGAGCTTCAAAATGAACCTAAACACGACTATATTTGCTGAACTTTGATTTTTTGGGTGCGTCGCGTGTTAGACATCAAATTTCAAAGTTGAGTGTTTCTAGGCAAGATTAGGCTCATTTCAAAGCTAGAAACGTAAGGAATCTGAAAATGATGTTTTTGAGCTTGAAAACTACTGAGTTAGGTGTGAAATTAGATTTTCAAAAATCTCGAAAACTGAAAGTTGATACATTCTAGACATTCTTAGGTTTATTTTAGAGCGCAAAACTTGAGGAATCTGATTTTCCAGTTGATACCGAGTGGGCGGAGGAACTGCACGTGATGGATGACGGAATTGGAATGAGTCGACAGGACATGCTCAATGTGATTCTATTTGGAAAAACCCAAAAAGGACCAGAATGCATTGGAAAATGGGGTAATGGACTGAAAACTGGAGGATGTTATCTGGGTCAGGACATGCTTGTGCTCTCCAAAAAGGATGGTGTTCATACGGCTCTGTTTTTGTCCCACTCGTTTTTGAATGCGGAGGGTTCGGAGCAGATCTATGTGCCAATCCCATCGAAGTATGCCGCTGGAGACCGATGTTGTCCAAGAGATGAGGATAAGAAAAGATGGAATTATGAAAATGAGGTCATTGCTCAGCACGCAGGGCTTACTGTACCCCTTTGGGACATGTTTGATAGGATTCCGGGAGACCATGGGACCCTTGTGATCAT</canonical>
            <polymorphic>AGCCTAAACACGACTAGTTTCGCTCTACTTCGATTTTTCAGCCGCGTCGCGGTCGTGCGTCGCGTGTCAGCCATCAAATTTGAAAGTTGAGTGATTCTAGGCAAGATTAGGCTCATTTTGAAGCTAAGAATCTCAGAAATCTAAATACGTTAAAATCAAGCTAGAAAAAATACTCTGTTTTGAGTTCAGGCCTAAACTCGGATTTTCAGAGTTTCAAAAATTACAAATATCTCTTCTCAAACTTTACCAGGTTTTCTGAGGTTAAGTTTTTCGAGTTTATCATTTTGAGAGCTTCAAAATGAACCTAAACACGACTATATTTGCTGAACTTTGATTTTTTGGGTGCGTCGCGTGTTAGACATCAAATTTCAAAGTTGAGTGTTTCTAGGCAAGATTAGGCTCATTTCAAAGCTAGAAACGTAAGGAATCTGAAAATGATGTTTTTGAGCTTGAAAACTACTGAGTTAGGTGTGAAATTAGATTTTCAAAAATCTCGAAAYCTGAAAGTTGATACATTCTAGACATTCTTAGGTTTATTTTAGAGCGCAAAACTTGAGGAATCTGATTTTCCAGTTGATACCGAGTGGGCGGAGGAACTGCACGTGATGGATGACGGAATTGGAATGAGTCGACAGGACATGCTCAATGTGATTCTATTTGGAAAAACCCAAAAAGGACCAGAATGCATTGGAAAATGGGGTAATGGACTGAAAACTGGAGGATGTTATCTGGGTCAGGACATGCTTGTGCTCTCCAAAAAGGATGGTGTTCATACGGCTCTGTTTTTGTCCCACTCGTTTTTGAATGCGGAGGGTTCGGAGCAGATCTATGTGCCAATCCCATCGAAGTATGCCGCTGGAGACCGATGTTGTCCAAGAGATGAGGATAAGAAAAGATGGAATTATGAAAATGAGGTCATTGCTCAGCACGCAGGGCTTACTGTACCCCTTTGGGACATGTTTGATAGGATTCCGGGAGACCATGGGACCCTTGTGATCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTGAAGAGGTGTTCTT</pcr_primer_p1>
		<pcr_primer_p2>AAATCAGATTCCTCAAGTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>936</pcr_amplicon_size>
		<canonical_amplicon>AACTGAAAGTTGATACATTCTAGACATTCTTAGGTTTATTTTAGAGCGCAAAACTTGAGGAATCTGATTT</canonical_amplicon>
		<polymorphic_amplicon>AYCTGAAAGTTGATACATTCTAGACATTCTTAGGTTTATTTTAGAGCGCAAAACTTGAGGAATCTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26478</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>42700</contig_pos>
        <strand>-</strand>
        <context>acacgactag[C/G]tttgctcttc</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTTTGCTCAGCACAACAAGAGCTTCAGAATAAGCTCAAACACGACTAG</left_flank>
        <right_flank>TTTGCTCTTCTTTGGTTTTTCGGGTGCGTCGCGGTCGTGCGTCGCGTGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATTGCTCATTGAGAGAATACCTTTCCGTGCTGTACAGGAGGCCAAAGATGAGGGTGAGTGGAAATTTAAAATTTTCAGCATTTCGAAAATTTCAAATATTTCTTTTCAAACTCAAACGATTTTTATGAAATTTGTATTGTTGAGTTCCTCACGTTGAGAGCTTCAAAATGAGCCTAAACACGACTAGATTAGCTCTTCTTCGATCTTTCGGATGCGTCGCGGTCGTGCGTCGCGTGTTAGGCATCGAATTTAAAAGTTGACCGATTCTAGGCATGATTAGGCTCATTTCAAAGCTCAAAGTCCCAAAAAGCTGAAAATATTATTCTCAAACTTGTGAAACTACCTAGTTTTGAGTTTAGGCATCTCTGAATCTCAAGAATCAGAATATAATTTTTGTTTTATAAATGTTCATTCGTTTTCGAAGTTTTAACCGAAAATTTTAATGATTTTTTTGCTCAGCACAACAAGAGCTTCAGAATAAGCTCAAACACGACTAGATTTGCTCTTCTTTGGTTTTTCGGGTGCGTCGCGGTCGTGCGTCGCGTGTTAGGTGTCAAATATGAAAGTTGACCGATTCAAGTCATTAGGCTCATTTTAAAGCTCAAATTCCCAAAAAGCTGAAAATGTTGTTTTTGAGCTCAAAAAATCTCTCATTTTTGAGTTTAGCCATAAAAATATATTTTGAGAATTTTGAAAATTTTCAAAAATTTTCAAATATCTCTTTTCAAACTCGACCAAGTTCTATGAAAATAGCTTTTTTGAGTTAATTCCGTATAGAGCTTTAAAATGAGCCCAAACACGACTAAATTTGCTCTTCTTCAGTTTTTCAGTCGCGTCGCGGTAGTGCGTCGCGTGTTAGGCATCAAATTTAAAAGCAGAGCGAATCTGGGCATGATTAGGCTCATTTTGAAGCTCATAACTTCTTGCTAAAAATTTTAACGTCGAGCTTCAAAACCTGCTTTCTTGAAAAAACAAGGCCCGGGAAAATTCGAAATTTT</canonical>
            <polymorphic>TCATTGCTCATTGAGAGAATACCTTTCCGTGCTGTACAGGAGGCCAAAGATGAGGGTGAGTGGAAATTTAAAATTTTCAGCATTTCGAAAATTTCAAATATTTCTTTTCAAACTCAAACGATTTTTATGAAATTTGTATTGTTGAGTTCCTCACGTTGAGAGCTTCAAAATGAGCCTAAACACGACTAGATTAGCTCTTCTTCGATCTTTCGGATGCGTCGCGGTCGTGCGTCGCGTGTTAGGCATCGAATTTAAAAGTTGACCGATTCTAGGCATGATTAGGCTCATTTCAAAGCTCAAAGTCCCAAAAAGCTGAAAATATTATTCTCAAACTTGTGAAACTACCTAGTTTTGAGTTTAGGCATCTCTGAATCTCAAGAATCAGAATATAATTTTTGTTTTATAAATGTTCATTCGTTTTCGAAGTTTTAACCGAAAATTTTAATGATTTTTTTGCTCAGCACAACAAGAGCTTCAGAATAAGCTCAAACACGACTAGSTTTGCTCTTCTTTGGTTTTTCGGGTGCGTCGCGGTCGTGCGTCGCGTGTTAGGTGTCAAATATGAAAGTTGACCGATTCAAGTCATTAGGCTCATTTTAAAGCTCAAATTCCCAAAAAGCTGAAAATGTTGTTTTTGAGCTCAAAAAATCTCTCATTTTTGAGTTTAGCCATAAAAATATATTTTGAGAATTTTGAAAATTTTCAAAAATTTTCAAATATCTCTTTTCAAACTCGACCAAGTTCTATGAAAATAGCTTTTTTGAGTTAATTCCGTATAGAGCTTTAAAATGAGCCCAAACACGACTAAATTTGCTCTTCTTCAGTTTTTCAGTCGCGTCGCGGTAGTGCGTCGCGTGTTAGGCATCAAATTTAAAAGCAGAGCGAATCTGGGCATGATTAGGCTCATTTTGAAGCTCATAACTTCTTGCTAAAAATTTTAACGTCGAGCTTCAAAACCTGCTTTCTTGAAAAAACAAGGCCCGGGAAAATTCGAAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATACCTTTCCGTGCTGTA</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAAGCAGGTTTTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>952</pcr_amplicon_size>
		<canonical_amplicon>GAATACCTTTCCGTGCTGTACAGGAGGCCAAAGATGAGGGTGAGTGGAAATTTAAAATTTTCAGCATTTCGAAAATTTCAAATATTTCTTTTCAAACTCAAACGATTTTTATGAAATTTGTATTGTTGAGTTCCTCACGTTGAGAGCTTCAAAATGAGCCTAAACACGACTAGATTAGCTCTTCTTCGATCTTTCGGATGCGTCGCGGTCGTGCGTCGCGTGTTAGGCATCGAATTTAAAAGTTGACCGATTCTAGGCATGATTAGGCTCATTTCAAAGCTCAAAGTCCCAAAAAGCTGAAAATATTATTCTCAAACTTGTGAAACTACCTAGTTTTGAGTTTAGGCATCTCTGAATCTCAAGAATCAGAATATAATTTTTGTTTTATAAATGTTCATTCGTTTTCGAAGTTTTAACCGAAAATTTTAATGATTTTTTTGCTCAGCACAACAAGAGCTTCAGAATAAGCTCAAACACGACTAGATTTGCTCTTCTTTGGTTTTTCGGGTGCGTCGCGGTCGTGCGTCGCGTGTTAGGTGTCAAATATGAAAGTTGACCGATTCAAGTCATTAGGCTCATTTTAAAGCTCAAATTCCCAAAAAGCTGAAAATGTTGTTTTTGAGCTCAAAAAATCTCTCATTTTTGAGTTTAGCCATAAAAATATATTTTGAGAATTTTGAAAATTTTCAAAAATTTTCAAATATCTCTTTTCAAACTCGACCAAGTTCTATGAAAATAGCTTTTTTGAGTTAATTCCGTATAGAGCTTTAAAATGAGCCCAAACACGACTAAATTTGCTCTTCTTCAGTTTTTCAGTCGCGTCGCGGTAGTGCGTCGCGTGTTAGGCATCAAATTTAAAAGCAGAGCGAATCTGGGCATGATTAGGCTCATTTTGAAGCTCATAACTTCTTGCTAAAAATTTTAACGTCGAGCTTCAAAACCTGCTTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>GAATACCTTTCCGTGCTGTACAGGAGGCCAAAGATGAGGGTGAGTGGAAATTTAAAATTTTCAGCATTTCGAAAATTTCAAATATTTCTTTTCAAACTCAAACGATTTTTATGAAATTTGTATTGTTGAGTTCCTCACGTTGAGAGCTTCAAAATGAGCCTAAACACGACTAGATTAGCTCTTCTTCGATCTTTCGGATGCGTCGCGGTCGTGCGTCGCGTGTTAGGCATCGAATTTAAAAGTTGACCGATTCTAGGCATGATTAGGCTCATTTCAAAGCTCAAAGTCCCAAAAAGCTGAAAATATTATTCTCAAACTTGTGAAACTACCTAGTTTTGAGTTTAGGCATCTCTGAATCTCAAGAATCAGAATATAATTTTTGTTTTATAAATGTTCATTCGTTTTCGAAGTTTTAACCGAAAATTTTAATGATTTTTTTGCTCAGCACAACAAGAGCTTCAGAATAAGCTCAAACACGACTAGSTTTGCTCTTCTTTGGTTTTTCGGGTGCGTCGCGGTCGTGCGTCGCGTGTTAGGTGTCAAATATGAAAGTTGACCGATTCAAGTCATTAGGCTCATTTTAAAGCTCAAATTCCCAAAAAGCTGAAAATGTTGTTTTTGAGCTCAAAAAATCTCTCATTTTTGAGTTTAGCCATAAAAATATATTTTGAGAATTTTGAAAATTTTCAAAAATTTTCAAATATCTCTTTTCAAACTCGACCAAGTTCTATGAAAATAGCTTTTTTGAGTTAATTCCGTATAGAGCTTTAAAATGAGCCCAAACACGACTAAATTTGCTCTTCTTCAGTTTTTCAGTCGCGTCGCGGTAGTGCGTCGCGTGTTAGGCATCAAATTTAAAAGCAGAGCGAATCTGGGCATGATTAGGCTCATTTTGAAGCTCATAACTTCTTGCTAAAAATTTTAACGTCGAGCTTCAAAACCTGCTTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26479</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>48364</contig_pos>
        <strand>+</strand>
        <context>GCATTAACCA[C/G]GGACTCAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCTCTCTCTCTCTCTCTCTCTCTCTCTAAATAAAATCAATGCATTAACCA</left_flank>
        <right_flank>GGACTCAACATAGGGACCCAACATGAGAAGCAGGACATTGGTGCCACAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAATTCAGAAATTCAGATAATTTAAAATTTAACCAGTTTCAGAGCTCATCGAAAGCCACCAAGCCATCTTTGACCATCAGCCAATTGAACGAAATTCTGGAAGCTCTTGGAGAAGCTCCATTCGATCCAAAGAATCCACAGGAAATCGACAATGTGTGCGCAAGACTTAAGGCTGTTGAGGAAGATGATAAGAATTTCGAAGAGAATATTGAAGTGATTTTTGAGCATCTGAGAAACAACGAGGAGCATGAACTGGACTTGGTACGTGAAACAAAATAAGAGCTGCAATTTTAAACTGTAGAATGCCAGGAATTCAGAAGTTCAAAAAATTTTTTTTCAGGATTCAACAGGAACCGGTGACGAAAGATTTGCAAAAATCGCCGAGCAGCTTCTCTTCCTCTCCCCCTCCTCCTCTTCCCACACTCTCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAATAAAATCAATGCATTAACCAGGGACTCAACATAGGGACCCAACATGAGAAGCAGGACATTGGTGCCACAAATTGAAGCGAAGGATGCGCAAAAAGTATACAGAATTGCATTCGAGTAGATGGTATCGAAAAAATGGTCTCGGAAAGAAGGATTGGTTCTTGGCTGGACCACGAGTTGGAGAGCTCTAAAGCGGCACTTTGGCATTTTGGCTGCTGATCAGTTGAGAAGCATCGTTGAGGGGGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTATTAAACAAATTAACGTTTAAAATTTCAGTTTTCTAAAGTTTTGAGCTTCAGAATAAGCCTAATCATGTCTAGATTTGGTCAACTTTCAGATTTATTGCCTTACCGCGACGCACGACCGCGACGCACCCCAAAGTTTGAAGAAACGCAAATCTAGTCGTGTTTAGGCTTATTTTAAAGCTCTCGACGTAAGAAACTCAAAAAATTAAAACTCATAAAGTTTGACCGAGATTGAAATGAGT</canonical>
            <polymorphic>GAAATTCAGAAATTCAGATAATTTAAAATTTAACCAGTTTCAGAGCTCATCGAAAGCCACCAAGCCATCTTTGACCATCAGCCAATTGAACGAAATTCTGGAAGCTCTTGGAGAAGCTCCATTCGATCCAAAGAATCCACAGGAAATCGACAATGTGTGCGCAAGACTTAAGGCTGTTGAGGAAGATGATAAGAATTTCGAAGAGAATATTGAAGTGATTTTTGAGCATCTGAGAAACAACGAGGAGCATGAACTGGACTTGGTACGTGAAACAAAATAAGAGCTGCAATTTTAAACTGTAGAATGCCAGGAATTCAGAAGTTCAAAAAATTTTTTTTCAGGATTCAACAGGAACCGGTGACGAAAGATTTGCAAAAATCGCCGAGCAGCTTCTCTTCCTCTCCCCCTCCTCCTCTTCCCACACTCTCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAATAAAATCAATGCATTAACCASGGACTCAACATAGGGACCCAACATGAGAAGCAGGACATTGGTGCCACAAATTGAAGCGAAGGATGCGCAAAAAGTATACAGAATTGCATTCGAGTAGATGGTATCGAAAAAATGGTCTCGGAAAGAAGGATTGGTTCTTGGCTGGACCACGAGTTGGAGAGCTCTAAAGCGGCACTTTGGCATTTTGGCTGCTGATCAGTTGAGAAGCATCGTTGAGGGGGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTATTAAACAAATTAACGTTTAAAATTTCAGTTTTCTAAAGTTTTGAGCTTCAGAATAAGCCTAATCATGTCTAGATTTGGTCAACTTTCAGATTTATTGCCTTACCGCGACGCACGACCGCGACGCACCCCAAAGTTTGAAGAAACGCAAATCTAGTCGTGTTTAGGCTTATTTTAAAGCTCTCGACGTAAGAAACTCAAAAAATTAAAACTCATAAAGTTTGACCGAGATTGAAATGAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>502 308 190</canonical_bands>
                <polymorphic_bands>692 308</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>502 308 190</canonical_bands>
                <polymorphic_bands>692 308</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGGATTCAACAGGAAC</pcr_primer_p1>
		<pcr_primer_p2>TCGATACCATCTACTCGAATG</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGGATTCAACAGGAACCGGTGACGAAAGATTTGCAAAAATCGCCGAGCAGCTTCTCTTCCTCTCCCCCTCCTCCTCTTCCCACACTCTCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAATAAAATCAATGCATTAACCAGGGACTCAACATAGGGACCCAACATGAGAAGCAGGACATTGGTGCCACAAATTGAAGCGAAGGATGCGCAAAAAGTATACAGAATTGCATTCGAGTAGATGGTATCGA</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGGATTCAACAGGAACCGGTGACGAAAGATTTGCAAAAATCGCCGAGCAGCTTCTCTTCCTCTCCCCCTCCTCCTCTTCCCACACTCTCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAATAAAATCAATGCATTAACCASGGACTCAACATAGGGACCCAACATGAGAAGCAGGACATTGGTGCCACAAATTGAAGCGAAGGATGCGCAAAAAGTATACAGAATTGCATTCGAGTAGATGGTATCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26480</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>48438</contig_pos>
        <strand>+</strand>
        <context>TGCGCAAAAA[G/T]TATASAGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAGAAGCAGGACATTGGTGCCACAAATTGAAGCGAAGGATGCGCAAAAA</left_flank>
        <right_flank>TATACAGAATTGCATTCGAGTAGATGGTATCGAAAAAATGGTCTCGGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCATCAGCCAATTGAACGAAATTCTGGAAGCTCTTGGAGAAGCTCCATTCGATCCAAAGAATCCACAGGAAATCGACAATGTGTGCGCAAGACTTAAGGCTGTTGAGGAAGATGATAAGAATTTCGAAGAGAATATTGAAGTGATTTTTGAGCATCTGAGAAACAACGAGGAGCATGAACTGGACTTGGTACGTGAAACAAAATAAGAGCTGCAATTTTAAACTGTAGAATGCCAGGAATTCAGAAGTTCAAAAAATTTTTTTTCAGGATTCAACAGGAACCGGTGACGAAAGATTTGCAAAAATCGCCGAGCAGCTTCTCTTCCTCTCCCCCTCCTCCTCTTCCCACACTCTCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAATAAAATCAATGCATTAACCAGGGACTCAACATAGGGACCCAACATGAGAAGCAGGACATTGGTGCCACAAATTGAAGCGAAGGATGCGCAAAAAGTATACAGAATTGCATTCGAGTAGATGGTATCGAAAAAATGGTCTCGGAAAGAAGGATTGGTTCTTGGCTGGACCACGAGTTGGAGAGCTCTAAAGCGGCACTTTGGCATTTTGGCTGCTGATCAGTTGAGAAGCATCGTTGAGGGGGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTATTAAACAAATTAACGTTTAAAATTTCAGTTTTCTAAAGTTTTGAGCTTCAGAATAAGCCTAATCATGTCTAGATTTGGTCAACTTTCAGATTTATTGCCTTACCGCGACGCACGACCGCGACGCACCCCAAAGTTTGAAGAAACGCAAATCTAGTCGTGTTTAGGCTTATTTTAAAGCTCTCGACGTAAGAAACTCAAAAAATTAAAACTCATAAAGTTTGACCGAGATTGAAATGAGTTTTTTGAAATTTTCAAAATTCTGAAAATCTAATTGATGTTTCTCAAGCTTGAAATTTGAATGTCTGGATTTCTA</canonical>
            <polymorphic>CCATCAGCCAATTGAACGAAATTCTGGAAGCTCTTGGAGAAGCTCCATTCGATCCAAAGAATCCACAGGAAATCGACAATGTGTGCGCAAGACTTAAGGCTGTTGAGGAAGATGATAAGAATTTCGAAGAGAATATTGAAGTGATTTTTGAGCATCTGAGAAACAACGAGGAGCATGAACTGGACTTGGTACGTGAAACAAAATAAGAGCTGCAATTTTAAACTGTAGAATGCCAGGAATTCAGAAGTTCAAAAAATTTTTTTTCAGGATTCAACAGGAACCGGTGACGAAAGATTTGCAAAAATCGCCGAGCAGCTTCTCTTCCTCTCCCCCTCCTCCTCTTCCCACACTCTCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAATAAAATCAATGCATTAACCAGGGACTCAACATAGGGACCCAACATGAGAAGCAGGACATTGGTGCCACAAATTGAAGCGAAGGATGCGCAAAAAKTATACAGAATTGCATTCGAGTAGATGGTATCGAAAAAATGGTCTCGGAAAGAAGGATTGGTTCTTGGCTGGACCACGAGTTGGAGAGCTCTAAAGCGGCACTTTGGCATTTTGGCTGCTGATCAGTTGAGAAGCATCGTTGAGGGGGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTATTAAACAAATTAACGTTTAAAATTTCAGTTTTCTAAAGTTTTGAGCTTCAGAATAAGCCTAATCATGTCTAGATTTGGTCAACTTTCAGATTTATTGCCTTACCGCGACGCACGACCGCGACGCACCCCAAAGTTTGAAGAAACGCAAATCTAGTCGTGTTTAGGCTTATTTTAAAGCTCTCGACGTAAGAAACTCAAAAAATTAAAACTCATAAAGTTTGACCGAGATTGAAATGAGTTTTTTGAAATTTTCAAAATTCTGAAAATCTAATTGATGTTTCTCAAGCTTGAAATTTGAATGTCTGGATTTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTATAC</site>
                <isoschizomers>
                    <enzyme>BssNAI</enzyme>
                    <enzyme>Bst1107I</enzyme>
                    <enzyme>BstZ17I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 265 233</canonical_bands>
                <polymorphic_bands>767 233</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGGATTCAACAGGAAC</pcr_primer_p1>
		<pcr_primer_p2>CTTCTTTCCGAGACCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>293</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGGATTCAACAGGAACCGGTGACGAAAGATTTGCAAAAATCGCCGAGCAGCTTCTCTTCCTCTCCCCCTCCTCCTCTTCCCACACTCTCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAATAAAATCAATGCATTAACCAGGGACTCAACATAGGGACCCAACATGAGAAGCAGGACATTGGTGCCACAAATTGAAGCGAAGGATGCGCAAAAAGTATACAGAATTGCATTCGAGTAGATGGTATCGAAAAAATGGTCTCGGAAAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGGATTCAACAGGAACCGGTGACGAAAGATTTGCAAAAATCGCCGAGCAGCTTCTCTTCCTCTCCCCCTCCTCCTCTTCCCACACTCTCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAATAAAATCAATGCATTAACCAGGGACTCAACATAGGGACCCAACATGAGAAGCAGGACATTGGTGCCACAAATTGAAGCGAAGGATGCGCAAAAAKTATACAGAATTGCATTCGAGTAGATGGTATCGAAAAAATGGTCTCGGAAAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26481</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>48443</contig_pos>
        <strand>+</strand>
        <context>AAAAAKTATA[C/G]AGAATTGCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGCAGGACATTGGTGCCACAAATTGAAGCGAAGGATGCGCAAAAAGTATA</left_flank>
        <right_flank>AGAATTGCATTCGAGTAGATGGTATCGAAAAAATGGTCTCGGAAAGAAGG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCCAATTGAACGAAATTCTGGAAGCTCTTGGAGAAGCTCCATTCGATCCAAAGAATCCACAGGAAATCGACAATGTGTGCGCAAGACTTAAGGCTGTTGAGGAAGATGATAAGAATTTCGAAGAGAATATTGAAGTGATTTTTGAGCATCTGAGAAACAACGAGGAGCATGAACTGGACTTGGTACGTGAAACAAAATAAGAGCTGCAATTTTAAACTGTAGAATGCCAGGAATTCAGAAGTTCAAAAAATTTTTTTTCAGGATTCAACAGGAACCGGTGACGAAAGATTTGCAAAAATCGCCGAGCAGCTTCTCTTCCTCTCCCCCTCCTCCTCTTCCCACACTCTCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAATAAAATCAATGCATTAACCAGGGACTCAACATAGGGACCCAACATGAGAAGCAGGACATTGGTGCCACAAATTGAAGCGAAGGATGCGCAAAAAGTATACAGAATTGCATTCGAGTAGATGGTATCGAAAAAATGGTCTCGGAAAGAAGGATTGGTTCTTGGCTGGACCACGAGTTGGAGAGCTCTAAAGCGGCACTTTGGCATTTTGGCTGCTGATCAGTTGAGAAGCATCGTTGAGGGGGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTATTAAACAAATTAACGTTTAAAATTTCAGTTTTCTAAAGTTTTGAGCTTCAGAATAAGCCTAATCATGTCTAGATTTGGTCAACTTTCAGATTTATTGCCTTACCGCGACGCACGACCGCGACGCACCCCAAAGTTTGAAGAAACGCAAATCTAGTCGTGTTTAGGCTTATTTTAAAGCTCTCGACGTAAGAAACTCAAAAAATTAAAACTCATAAAGTTTGACCGAGATTGAAATGAGTTTTTTGAAATTTTCAAAATTCTGAAAATCTAATTGATGTTTCTCAAGCTTGAAATTTGAATGTCTGGATTTCTAAACTT</canonical>
            <polymorphic>AGCCAATTGAACGAAATTCTGGAAGCTCTTGGAGAAGCTCCATTCGATCCAAAGAATCCACAGGAAATCGACAATGTGTGCGCAAGACTTAAGGCTGTTGAGGAAGATGATAAGAATTTCGAAGAGAATATTGAAGTGATTTTTGAGCATCTGAGAAACAACGAGGAGCATGAACTGGACTTGGTACGTGAAACAAAATAAGAGCTGCAATTTTAAACTGTAGAATGCCAGGAATTCAGAAGTTCAAAAAATTTTTTTTCAGGATTCAACAGGAACCGGTGACGAAAGATTTGCAAAAATCGCCGAGCAGCTTCTCTTCCTCTCCCCCTCCTCCTCTTCCCACACTCTCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAATAAAATCAATGCATTAACCAGGGACTCAACATAGGGACCCAACATGAGAAGCAGGACATTGGTGCCACAAATTGAAGCGAAGGATGCGCAAAAAGTATASAGAATTGCATTCGAGTAGATGGTATCGAAAAAATGGTCTCGGAAAGAAGGATTGGTTCTTGGCTGGACCACGAGTTGGAGAGCTCTAAAGCGGCACTTTGGCATTTTGGCTGCTGATCAGTTGAGAAGCATCGTTGAGGGGGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTATTAAACAAATTAACGTTTAAAATTTCAGTTTTCTAAAGTTTTGAGCTTCAGAATAAGCCTAATCATGTCTAGATTTGGTCAACTTTCAGATTTATTGCCTTACCGCGACGCACGACCGCGACGCACCCCAAAGTTTGAAGAAACGCAAATCTAGTCGTGTTTAGGCTTATTTTAAAGCTCTCGACGTAAGAAACTCAAAAAATTAAAACTCATAAAGTTTGACCGAGATTGAAATGAGTTTTTTGAAATTTTCAAAATTCTGAAAATCTAATTGATGTTTCTCAAGCTTGAAATTTGAATGTCTGGATTTCTAAACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTATAC</site>
                <isoschizomers>
                    <enzyme>BssNAI</enzyme>
                    <enzyme>Bst1107I</enzyme>
                    <enzyme>BstZ17I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>497 265 238</canonical_bands>
                <polymorphic_bands>762 238</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGGATTCAACAGGAAC</pcr_primer_p1>
		<pcr_primer_p2>AACGATGCTTCTCAACTGAT</pcr_primer_p2>
		<pcr_amplicon_size>379</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGGATTCAACAGGAACCGGTGACGAAAGATTTGCAAAAATCGCCGAGCAGCTTCTCTTCCTCTCCCCCTCCTCCTCTTCCCACACTCTCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAATAAAATCAATGCATTAACCAGGGACTCAACATAGGGACCCAACATGAGAAGCAGGACATTGGTGCCACAAATTGAAGCGAAGGATGCGCAAAAAGTATACAGAATTGCATTCGAGTAGATGGTATCGAAAAAATGGTCTCGGAAAGAAGGATTGGTTCTTGGCTGGACCACGAGTTGGAGAGCTCTAAAGCGGCACTTTGGCATTTTGGCTGCTGATCAGTTGAGAAGCATCGTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGGATTCAACAGGAACCGGTGACGAAAGATTTGCAAAAATCGCCGAGCAGCTTCTCTTCCTCTCCCCCTCCTCCTCTTCCCACACTCTCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAATAAAATCAATGCATTAACCAGGGACTCAACATAGGGACCCAACATGAGAAGCAGGACATTGGTGCCACAAATTGAAGCGAAGGATGCGCAAAAAGTATASAGAATTGCATTCGAGTAGATGGTATCGAAAAAATGGTCTCGGAAAGAAGGATTGGTTCTTGGCTGGACCACGAGTTGGAGAGCTCTAAAGCGGCACTTTGGCATTTTGGCTGCTGATCAGTTGAGAAGCATCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26482</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>48584</contig_pos>
        <strand>+</strand>
        <context>TCGTTGAGGG[C/G]GAGGATCAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGGCACTTTGGCATTTTGGCTGCTGATCAGTTGAGAAGCATCGTTGAGGG</left_flank>
        <right_flank>GAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTATTAAACAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAGCATCTGAGAAACAACGAGGAGCATGAACTGGACTTGGTACGTGAAACAAAATAAGAGCTGCAATTTTAAACTGTAGAATGCCAGGAATTCAGAAGTTCAAAAAATTTTTTTTCAGGATTCAACAGGAACCGGTGACGAAAGATTTGCAAAAATCGCCGAGCAGCTTCTCTTCCTCTCCCCCTCCTCCTCTTCCCACACTCTCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAATAAAATCAATGCATTAACCAGGGACTCAACATAGGGACCCAACATGAGAAGCAGGACATTGGTGCCACAAATTGAAGCGAAGGATGCGCAAAAAGTATACAGAATTGCATTCGAGTAGATGGTATCGAAAAAATGGTCTCGGAAAGAAGGATTGGTTCTTGGCTGGACCACGAGTTGGAGAGCTCTAAAGCGGCACTTTGGCATTTTGGCTGCTGATCAGTTGAGAAGCATCGTTGAGGGGGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTATTAAACAAATTAACGTTTAAAATTTCAGTTTTCTAAAGTTTTGAGCTTCAGAATAAGCCTAATCATGTCTAGATTTGGTCAACTTTCAGATTTATTGCCTTACCGCGACGCACGACCGCGACGCACCCCAAAGTTTGAAGAAACGCAAATCTAGTCGTGTTTAGGCTTATTTTAAAGCTCTCGACGTAAGAAACTCAAAAAATTAAAACTCATAAAGTTTGACCGAGATTGAAATGAGTTTTTTGAAATTTTCAAAATTCTGAAAATCTAATTGATGTTTCTCAAGCTTGAAATTTGAATGTCTGGATTTCTAAACTTCTGAGTTTTGAAATGAGCCTAATCACGCCTAGAATTGGACAACTTTCAAATTTGATGACTAACACGCGACGCACGACCGCGACGCACCCAAAAAAACCAAAGCAAGGTTGTTTAGGCTCATTTTGAAGCTCTCAACGTAAG</canonical>
            <polymorphic>TTTGAGCATCTGAGAAACAACGAGGAGCATGAACTGGACTTGGTACGTGAAACAAAATAAGAGCTGCAATTTTAAACTGTAGAATGCCAGGAATTCAGAAGTTCAAAAAATTTTTTTTCAGGATTCAACAGGAACCGGTGACGAAAGATTTGCAAAAATCGCCGAGCAGCTTCTCTTCCTCTCCCCCTCCTCCTCTTCCCACACTCTCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAATAAAATCAATGCATTAACCAGGGACTCAACATAGGGACCCAACATGAGAAGCAGGACATTGGTGCCACAAATTGAAGCGAAGGATGCGCAAAAAGTATACAGAATTGCATTCGAGTAGATGGTATCGAAAAAATGGTCTCGGAAAGAAGGATTGGTTCTTGGCTGGACCACGAGTTGGAGAGCTCTAAAGCGGCACTTTGGCATTTTGGCTGCTGATCAGTTGAGAAGCATCGTTGAGGGSGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTATTAAACAAATTAACGTTTAAAATTTCAGTTTTCTAAAGTTTTGAGCTTCAGAATAAGCCTAATCATGTCTAGATTTGGTCAACTTTCAGATTTATTGCCTTACCGCGACGCACGACCGCGACGCACCCCAAAGTTTGAAGAAACGCAAATCTAGTCGTGTTTAGGCTTATTTTAAAGCTCTCGACGTAAGAAACTCAAAAAATTAAAACTCATAAAGTTTGACCGAGATTGAAATGAGTTTTTTGAAATTTTCAAAATTCTGAAAATCTAATTGATGTTTCTCAAGCTTGAAATTTGAATGTCTGGATTTCTAAACTTCTGAGTTTTGAAATGAGCCTAATCACGCCTAGAATTGGACAACTTTCAAATTTGATGACTAACACGCGACGCACGACCGCGACGCACCCAAAAAAACCAAAGCAAGGTTGTTTAGGCTCATTTTGAAGCTCTCAACGTAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATGGTCTCGGAAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAATCGCAGTACATTATTC</pcr_primer_p2>
		<pcr_amplicon_size>877</pcr_amplicon_size>
		<canonical_amplicon>AAAATGGTCTCGGAAAGAAGGATTGGTTCTTGGCTGGACCACGAGTTGGAGAGCTCTAAAGCGGCACTTTGGCATTTTGGCTGCTGATCAGTTGAGAAGCATCGTTGAGGGGGAGGATCAAAGCATTCCGAATG</canonical_amplicon>
		<polymorphic_amplicon>AAAATGGTCTCGGAAAGAAGGATTGGTTCTTGGCTGGACCACGAGTTGGAGAGCTCTAAAGCGGCACTTTGGCATTTTGGCTGCTGATCAGTTGAGAAGCATCGTTGAGGGSGAGGATCAAAGCATTCCGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26483</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>48625</contig_pos>
        <strand>+</strand>
        <context>TCTGGAATTT[A/C]TTAAACAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGTTGAGGGGGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTT</left_flank>
        <right_flank>TTAAACAAATTAACGTTTAAAATTTCAGTTTTCTAAAGTTTTGAGCTTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTACGTGAAACAAAATAAGAGCTGCAATTTTAAACTGTAGAATGCCAGGAATTCAGAAGTTCAAAAAATTTTTTTTCAGGATTCAACAGGAACCGGTGACGAAAGATTTGCAAAAATCGCCGAGCAGCTTCTCTTCCTCTCCCCCTCCTCCTCTTCCCACACTCTCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAATAAAATCAATGCATTAACCAGGGACTCAACATAGGGACCCAACATGAGAAGCAGGACATTGGTGCCACAAATTGAAGCGAAGGATGCGCAAAAAGTATACAGAATTGCATTCGAGTAGATGGTATCGAAAAAATGGTCTCGGAAAGAAGGATTGGTTCTTGGCTGGACCACGAGTTGGAGAGCTCTAAAGCGGCACTTTGGCATTTTGGCTGCTGATCAGTTGAGAAGCATCGTTGAGGGGGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTATTAAACAAATTAACGTTTAAAATTTCAGTTTTCTAAAGTTTTGAGCTTCAGAATAAGCCTAATCATGTCTAGATTTGGTCAACTTTCAGATTTATTGCCTTACCGCGACGCACGACCGCGACGCACCCCAAAGTTTGAAGAAACGCAAATCTAGTCGTGTTTAGGCTTATTTTAAAGCTCTCGACGTAAGAAACTCAAAAAATTAAAACTCATAAAGTTTGACCGAGATTGAAATGAGTTTTTTGAAATTTTCAAAATTCTGAAAATCTAATTGATGTTTCTCAAGCTTGAAATTTGAATGTCTGGATTTCTAAACTTCTGAGTTTTGAAATGAGCCTAATCACGCCTAGAATTGGACAACTTTCAAATTTGATGACTAACACGCGACGCACGACCGCGACGCACCCAAAAAAACCAAAGCAAGGTTGTTTAGGCTCATTTTGAAGCTCTCAACGTAAGAAACTCGAATAATCTACCGTAAAACCTCTAATAGAACGACA</canonical>
            <polymorphic>GGTACGTGAAACAAAATAAGAGCTGCAATTTTAAACTGTAGAATGCCAGGAATTCAGAAGTTCAAAAAATTTTTTTTCAGGATTCAACAGGAACCGGTGACGAAAGATTTGCAAAAATCGCCGAGCAGCTTCTCTTCCTCTCCCCCTCCTCCTCTTCCCACACTCTCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAATAAAATCAATGCATTAACCAGGGACTCAACATAGGGACCCAACATGAGAAGCAGGACATTGGTGCCACAAATTGAAGCGAAGGATGCGCAAAAAGTATACAGAATTGCATTCGAGTAGATGGTATCGAAAAAATGGTCTCGGAAAGAAGGATTGGTTCTTGGCTGGACCACGAGTTGGAGAGCTCTAAAGCGGCACTTTGGCATTTTGGCTGCTGATCAGTTGAGAAGCATCGTTGAGGGGGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTMTTAAACAAATTAACGTTTAAAATTTCAGTTTTCTAAAGTTTTGAGCTTCAGAATAAGCCTAATCATGTCTAGATTTGGTCAACTTTCAGATTTATTGCCTTACCGCGACGCACGACCGCGACGCACCCCAAAGTTTGAAGAAACGCAAATCTAGTCGTGTTTAGGCTTATTTTAAAGCTCTCGACGTAAGAAACTCAAAAAATTAAAACTCATAAAGTTTGACCGAGATTGAAATGAGTTTTTTGAAATTTTCAAAATTCTGAAAATCTAATTGATGTTTCTCAAGCTTGAAATTTGAATGTCTGGATTTCTAAACTTCTGAGTTTTGAAATGAGCCTAATCACGCCTAGAATTGGACAACTTTCAAATTTGATGACTAACACGCGACGCACGACCGCGACGCACCCAAAAAAACCAAAGCAAGGTTGTTTAGGCTCATTTTGAAGCTCTCAACGTAAGAAACTCGAATAATCTACCGTAAAACCTCTAATAGAACGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTGAGAAGCATCGTTGAG</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAATCGCAGTACATTATTC</pcr_primer_p2>
		<pcr_amplicon_size>788</pcr_amplicon_size>
		<canonical_amplicon>AGTTGAGAAGCATCGTTGAGGGGGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTATTAAACAAATTAACGTTTAAAA</canonical_amplicon>
		<polymorphic_amplicon>AGTTGAGAAGCATCGTTGAGGGGGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTMTTAAACAAATTAACGTTTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26484</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>48676</contig_pos>
        <strand></strand>
        <context>ttgagcttca[G/A]aataagccta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTAAACAAATTAACGTTTAAAATTTCAGTTTTCTAAAGTTTTGAGCTTCA</left_flank>
        <right_flank>AATAAGCCTAATCATGTCTAGATTTGGTCAACTTTCAGATTTATTGCCTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCAGAAGTTCAAAAAATTTTTTTTCAGGATTCAACAGGAACCGGTGACGAAAGATTTGCAAAAATCGCCGAGCAGCTTCTCTTCCTCTCCCCCTCCTCCTCTTCCCACACTCTCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAATAAAATCAATGCATTAACCAGGGACTCAACATAGGGACCCAACATGAGAAGCAGGACATTGGTGCCACAAATTGAAGCGAAGGATGCGCAAAAAGTATACAGAATTGCATTCGAGTAGATGGTATCGAAAAAATGGTCTCGGAAAGAAGGATTGGTTCTTGGCTGGACCACGAGTTGGAGAGCTCTAAAGCGGCACTTTGGCATTTTGGCTGCTGATCAGTTGAGAAGCATCGTTGAGGGGGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTATTAAACAAATTAACGTTTAAAATTTCAGTTTTCTAAAGTTTTGAGCTTCAGAATAAGCCTAATCATGTCTAGATTTGGTCAACTTTCAGATTTATTGCCTTACCGCGACGCACGACCGCGACGCACCCCAAAGTTTGAAGAAACGCAAATCTAGTCGTGTTTAGGCTTATTTTAAAGCTCTCGACGTAAGAAACTCAAAAAATTAAAACTCATAAAGTTTGACCGAGATTGAAATGAGTTTTTTGAAATTTTCAAAATTCTGAAAATCTAATTGATGTTTCTCAAGCTTGAAATTTGAATGTCTGGATTTCTAAACTTCTGAGTTTTGAAATGAGCCTAATCACGCCTAGAATTGGACAACTTTCAAATTTGATGACTAACACGCGACGCACGACCGCGACGCACCCAAAAAAACCAAAGCAAGGTTGTTTAGGCTCATTTTGAAGCTCTCAACGTAAGAAACTCGAATAATCTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATC</canonical>
            <polymorphic>ATTCAGAAGTTCAAAAAATTTTTTTTCAGGATTCAACAGGAACCGGTGACGAAAGATTTGCAAAAATCGCCGAGCAGCTTCTCTTCCTCTCCCCCTCCTCCTCTTCCCACACTCTCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAATAAAATCAATGCATTAACCAGGGACTCAACATAGGGACCCAACATGAGAAGCAGGACATTGGTGCCACAAATTGAAGCGAAGGATGCGCAAAAAGTATACAGAATTGCATTCGAGTAGATGGTATCGAAAAAATGGTCTCGGAAAGAAGGATTGGTTCTTGGCTGGACCACGAGTTGGAGAGCTCTAAAGCGGCACTTTGGCATTTTGGCTGCTGATCAGTTGAGAAGCATCGTTGAGGGGGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTATTAAACAAATTAACGTTTAAAATTTCAGTTTTCTAAAGTTTTGAGCTTCARAATAAGCCTAATCATGTCTAGATTTGGTCAACTTTCAGATTTATTGCCTTACCGCGACGCACGACCGCGACGCACCCCAAAGTTTGAAGAAACGCAAATCTAGTCGTGTTTAGGCTTATTTTAAAGCTCTCGACGTAAGAAACTCAAAAAATTAAAACTCATAAAGTTTGACCGAGATTGAAATGAGTTTTTTGAAATTTTCAAAATTCTGAAAATCTAATTGATGTTTCTCAAGCTTGAAATTTGAATGTCTGGATTTCTAAACTTCTGAGTTTTGAAATGAGCCTAATCACGCCTAGAATTGGACAACTTTCAAATTTGATGACTAACACGCGACGCACGACCGCGACGCACCCAAAAAAACCAAAGCAAGGTTGTTTAGGCTCATTTTGAAGCTCTCAACGTAAGAAACTCGAATAATCTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>303 231 173 117 74 59 38 5</canonical_bands>
                <polymorphic_bands>303 231 173 117 112 59 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTGAGAAGCATCGTTGAG</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAATCGCAGTACATTATTC</pcr_primer_p2>
		<pcr_amplicon_size>788</pcr_amplicon_size>
		<canonical_amplicon>AGTTGAGAAGCATCGTTGAGGGGGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTATTAAACAAATTAACGTTTAAAATTTCAGTTTTCTAAAGTTTTGAGCTTCAGAATAAGCCTAATCATGTCTAGA</canonical_amplicon>
		<polymorphic_amplicon>AGTTGAGAAGCATCGTTGAGGGGGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTATTAAACAAATTAACGTTTAAAATTTCAGTTTTCTAAAGTTTTGAGCTTCARAATAAGCCTAATCATGTCTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26485</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>48732</contig_pos>
        <strand></strand>
        <context>gccttaccgc[G/T]acgcacgacc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCCTAATCATGTCTAGATTTGGTCAACTTTCAGATTTATTGCCTTACCGC</left_flank>
        <right_flank>ACGCACGACCGCGACGCACCCCAAAGTTTGAAGAAACGCAAATCTAGTCG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGCAAAAATCGCCGAGCAGCTTCTCTTCCTCTCCCCCTCCTCCTCTTCCCACACTCTCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAATAAAATCAATGCATTAACCAGGGACTCAACATAGGGACCCAACATGAGAAGCAGGACATTGGTGCCACAAATTGAAGCGAAGGATGCGCAAAAAGTATACAGAATTGCATTCGAGTAGATGGTATCGAAAAAATGGTCTCGGAAAGAAGGATTGGTTCTTGGCTGGACCACGAGTTGGAGAGCTCTAAAGCGGCACTTTGGCATTTTGGCTGCTGATCAGTTGAGAAGCATCGTTGAGGGGGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTATTAAACAAATTAACGTTTAAAATTTCAGTTTTCTAAAGTTTTGAGCTTCAGAATAAGCCTAATCATGTCTAGATTTGGTCAACTTTCAGATTTATTGCCTTACCGCGACGCACGACCGCGACGCACCCCAAAGTTTGAAGAAACGCAAATCTAGTCGTGTTTAGGCTTATTTTAAAGCTCTCGACGTAAGAAACTCAAAAAATTAAAACTCATAAAGTTTGACCGAGATTGAAATGAGTTTTTTGAAATTTTCAAAATTCTGAAAATCTAATTGATGTTTCTCAAGCTTGAAATTTGAATGTCTGGATTTCTAAACTTCTGAGTTTTGAAATGAGCCTAATCACGCCTAGAATTGGACAACTTTCAAATTTGATGACTAACACGCGACGCACGACCGCGACGCACCCAAAAAAACCAAAGCAAGGTTGTTTAGGCTCATTTTGAAGCTCTCAACGTAAGAAACTCGAATAATCTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAAGTGGTTAACTAATAAAATGTTTATCAGGTTATCAGCAACATTTTACCAGTT</canonical>
            <polymorphic>TTTGCAAAAATCGCCGAGCAGCTTCTCTTCCTCTCCCCCTCCTCCTCTTCCCACACTCTCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAATAAAATCAATGCATTAACCAGGGACTCAACATAGGGACCCAACATGAGAAGCAGGACATTGGTGCCACAAATTGAAGCGAAGGATGCGCAAAAAGTATACAGAATTGCATTCGAGTAGATGGTATCGAAAAAATGGTCTCGGAAAGAAGGATTGGTTCTTGGCTGGACCACGAGTTGGAGAGCTCTAAAGCGGCACTTTGGCATTTTGGCTGCTGATCAGTTGAGAAGCATCGTTGAGGGGGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTATTAAACAAATTAACGTTTAAAATTTCAGTTTTCTAAAGTTTTGAGCTTCAGAATAAGCCTAATCATGTCTAGATTTGGTCAACTTTCAGATTTATTGCCTTACCGCKACGCACGACCGCGACGCACCCCAAAGTTTGAAGAAACGCAAATCTAGTCGTGTTTAGGCTTATTTTAAAGCTCTCGACGTAAGAAACTCAAAAAATTAAAACTCATAAAGTTTGACCGAGATTGAAATGAGTTTTTTGAAATTTTCAAAATTCTGAAAATCTAATTGATGTTTCTCAAGCTTGAAATTTGAATGTCTGGATTTCTAAACTTCTGAGTTTTGAAATGAGCCTAATCACGCCTAGAATTGGACAACTTTCAAATTTGATGACTAACACGCGACGCACGACCGCGACGCACCCAAAAAAACCAAAGCAAGGTTGTTTAGGCTCATTTTGAAGCTCTCAACGTAAGAAACTCGAATAATCTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAAGTGGTTAACTAATAAAATGTTTATCAGGTTATCAGCAACATTTTACCAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>498 266 210 13 13</canonical_bands>
                <polymorphic_bands>511 266 210 13</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>503 205 203 63 13 13</canonical_bands>
                <polymorphic_bands>516 205 203 63 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTGAGAAGCATCGTTGAG</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAATCGCAGTACATTATTC</pcr_primer_p2>
		<pcr_amplicon_size>788</pcr_amplicon_size>
		<canonical_amplicon>AGTTGAGAAGCATCGTTGAGGGGGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTATTAAACAAATTAACGTTTAAAATTTCAGTTTTCTAAAGTTTTGAGCTTCAGAATAAGCCTAATCATGTCTAGATTTGGTCAACTTTCAGATTTATTGCCTTACCGCGACGCACGACCGCGACGCACCCC</canonical_amplicon>
		<polymorphic_amplicon>AGTTGAGAAGCATCGTTGAGGGGGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTATTAAACAAATTAACGTTTAAAATTTCAGTTTTCTAAAGTTTTGAGCTTCAGAATAAGCCTAATCATGTCTAGATTTGGTCAACTTTCAGATTTATTGCCTTACCGCKACGCACGACCGCGACGCACCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26486</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>48748</contig_pos>
        <strand></strand>
        <context>cgaccgcgac[G/A]caccccaaar</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTTGGTCAACTTTCAGATTTATTGCCTTACCGCGACGCACGACCGCGAC</left_flank>
        <right_flank>CACCCCAAAGTTTGAAGAAACGCAAATCTAGTCGTGTTTAGGCTTATTTT</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCAGCTTCTCTTCCTCTCCCCCTCCTCCTCTTCCCACACTCTCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAATAAAATCAATGCATTAACCAGGGACTCAACATAGGGACCCAACATGAGAAGCAGGACATTGGTGCCACAAATTGAAGCGAAGGATGCGCAAAAAGTATACAGAATTGCATTCGAGTAGATGGTATCGAAAAAATGGTCTCGGAAAGAAGGATTGGTTCTTGGCTGGACCACGAGTTGGAGAGCTCTAAAGCGGCACTTTGGCATTTTGGCTGCTGATCAGTTGAGAAGCATCGTTGAGGGGGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTATTAAACAAATTAACGTTTAAAATTTCAGTTTTCTAAAGTTTTGAGCTTCAGAATAAGCCTAATCATGTCTAGATTTGGTCAACTTTCAGATTTATTGCCTTACCGCGACGCACGACCGCGACGCACCCCAAAGTTTGAAGAAACGCAAATCTAGTCGTGTTTAGGCTTATTTTAAAGCTCTCGACGTAAGAAACTCAAAAAATTAAAACTCATAAAGTTTGACCGAGATTGAAATGAGTTTTTTGAAATTTTCAAAATTCTGAAAATCTAATTGATGTTTCTCAAGCTTGAAATTTGAATGTCTGGATTTCTAAACTTCTGAGTTTTGAAATGAGCCTAATCACGCCTAGAATTGGACAACTTTCAAATTTGATGACTAACACGCGACGCACGACCGCGACGCACCCAAAAAAACCAAAGCAAGGTTGTTTAGGCTCATTTTGAAGCTCTCAACGTAAGAAACTCGAATAATCTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAAGTGGTTAACTAATAAAATGTTTATCAGGTTATCAGCAACATTTTACCAGTTAGCCACTTTTCGATAT</canonical>
            <polymorphic>AGCAGCTTCTCTTCCTCTCCCCCTCCTCCTCTTCCCACACTCTCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAATAAAATCAATGCATTAACCAGGGACTCAACATAGGGACCCAACATGAGAAGCAGGACATTGGTGCCACAAATTGAAGCGAAGGATGCGCAAAAAGTATACAGAATTGCATTCGAGTAGATGGTATCGAAAAAATGGTCTCGGAAAGAAGGATTGGTTCTTGGCTGGACCACGAGTTGGAGAGCTCTAAAGCGGCACTTTGGCATTTTGGCTGCTGATCAGTTGAGAAGCATCGTTGAGGGGGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTATTAAACAAATTAACGTTTAAAATTTCAGTTTTCTAAAGTTTTGAGCTTCAGAATAAGCCTAATCATGTCTAGATTTGGTCAACTTTCAGATTTATTGCCTTACCGCGACGCACGACCGCGACRCACCCCAAAGTTTGAAGAAACGCAAATCTAGTCGTGTTTAGGCTTATTTTAAAGCTCTCGACGTAAGAAACTCAAAAAATTAAAACTCATAAAGTTTGACCGAGATTGAAATGAGTTTTTTGAAATTTTCAAAATTCTGAAAATCTAATTGATGTTTCTCAAGCTTGAAATTTGAATGTCTGGATTTCTAAACTTCTGAGTTTTGAAATGAGCCTAATCACGCCTAGAATTGGACAACTTTCAAATTTGATGACTAACACGCGACGCACGACCGCGACGCACCCAAAAAAACCAAAGCAAGGTTGTTTAGGCTCATTTTGAAGCTCTCAACGTAAGAAACTCGAATAATCTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAAGTGGTTAACTAATAAAATGTTTATCAGGTTATCAGCAACATTTTACCAGTTAGCCACTTTTCGATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>487 221 203 63 13 13</canonical_bands>
                <polymorphic_bands>487 221 203 76 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTGAGAAGCATCGTTGAG</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAATCGCAGTACATTATTC</pcr_primer_p2>
		<pcr_amplicon_size>788</pcr_amplicon_size>
		<canonical_amplicon>AGTTGAGAAGCATCGTTGAGGGGGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTATTAAACAAATTAACGTTTAAAATTTCAGTTTTCTAAAGTTTTGAGCTTCAGAATAAGCCTAATCATGTCTAGATTTGGTCAACTTTCAGATTTATTGCCTTACCGCGACGCACGACCGCGACGCACCCCAAAGTTTGAAGAAACG</canonical_amplicon>
		<polymorphic_amplicon>AGTTGAGAAGCATCGTTGAGGGGGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTATTAAACAAATTAACGTTTAAAATTTCAGTTTTCTAAAGTTTTGAGCTTCAGAATAAGCCTAATCATGTCTAGATTTGGTCAACTTTCAGATTTATTGCCTTACCGCGACGCACGACCGCGACRCACCCCAAAGTTTGAAGAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26487</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>48758</contig_pos>
        <strand></strand>
        <context>rcaccccaaa[G/A]tttgaagaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTTTCAGATTTATTGCCTTACCGCGACGCACGACCGCGACGCACCCCAAA</left_flank>
        <right_flank>TTTGAAGAAACGCAAATCTAGTCGTGTTTAGGCTTATTTTAAAGCTCTCG</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCCTCTCCCCCTCCTCCTCTTCCCACACTCTCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAATAAAATCAATGCATTAACCAGGGACTCAACATAGGGACCCAACATGAGAAGCAGGACATTGGTGCCACAAATTGAAGCGAAGGATGCGCAAAAAGTATACAGAATTGCATTCGAGTAGATGGTATCGAAAAAATGGTCTCGGAAAGAAGGATTGGTTCTTGGCTGGACCACGAGTTGGAGAGCTCTAAAGCGGCACTTTGGCATTTTGGCTGCTGATCAGTTGAGAAGCATCGTTGAGGGGGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTATTAAACAAATTAACGTTTAAAATTTCAGTTTTCTAAAGTTTTGAGCTTCAGAATAAGCCTAATCATGTCTAGATTTGGTCAACTTTCAGATTTATTGCCTTACCGCGACGCACGACCGCGACGCACCCCAAAGTTTGAAGAAACGCAAATCTAGTCGTGTTTAGGCTTATTTTAAAGCTCTCGACGTAAGAAACTCAAAAAATTAAAACTCATAAAGTTTGACCGAGATTGAAATGAGTTTTTTGAAATTTTCAAAATTCTGAAAATCTAATTGATGTTTCTCAAGCTTGAAATTTGAATGTCTGGATTTCTAAACTTCTGAGTTTTGAAATGAGCCTAATCACGCCTAGAATTGGACAACTTTCAAATTTGATGACTAACACGCGACGCACGACCGCGACGCACCCAAAAAAACCAAAGCAAGGTTGTTTAGGCTCATTTTGAAGCTCTCAACGTAAGAAACTCGAATAATCTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAAGTGGTTAACTAATAAAATGTTTATCAGGTTATCAGCAACATTTTACCAGTTAGCCACTTTTCGATATCTTTCACAGA</canonical>
            <polymorphic>CTTCCTCTCCCCCTCCTCCTCTTCCCACACTCTCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAATAAAATCAATGCATTAACCAGGGACTCAACATAGGGACCCAACATGAGAAGCAGGACATTGGTGCCACAAATTGAAGCGAAGGATGCGCAAAAAGTATACAGAATTGCATTCGAGTAGATGGTATCGAAAAAATGGTCTCGGAAAGAAGGATTGGTTCTTGGCTGGACCACGAGTTGGAGAGCTCTAAAGCGGCACTTTGGCATTTTGGCTGCTGATCAGTTGAGAAGCATCGTTGAGGGGGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTATTAAACAAATTAACGTTTAAAATTTCAGTTTTCTAAAGTTTTGAGCTTCAGAATAAGCCTAATCATGTCTAGATTTGGTCAACTTTCAGATTTATTGCCTTACCGCGACGCACGACCGCGACGCACCCCAAARTTTGAAGAAACGCAAATCTAGTCGTGTTTAGGCTTATTTTAAAGCTCTCGACGTAAGAAACTCAAAAAATTAAAACTCATAAAGTTTGACCGAGATTGAAATGAGTTTTTTGAAATTTTCAAAATTCTGAAAATCTAATTGATGTTTCTCAAGCTTGAAATTTGAATGTCTGGATTTCTAAACTTCTGAGTTTTGAAATGAGCCTAATCACGCCTAGAATTGGACAACTTTCAAATTTGATGACTAACACGCGACGCACGACCGCGACGCACCCAAAAAAACCAAAGCAAGGTTGTTTAGGCTCATTTTGAAGCTCTCAACGTAAGAAACTCGAATAATCTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAAGTGGTTAACTAATAAAATGTTTATCAGGTTATCAGCAACATTTTACCAGTTAGCCACTTTTCGATATCTTTCACAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTGAGAAGCATCGTTGAG</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAATCGCAGTACATTATTC</pcr_primer_p2>
		<pcr_amplicon_size>788</pcr_amplicon_size>
		<canonical_amplicon>AGTTGAGAAGCATCGTTGAGGGGGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTATTAAACAAATTAACGTTTAAAATTTCAGTTTTCTAAAGTTTTGAGCTTCAGAATAAGCCTAATCATGTCTAGATTTGGTCAACTTTCAGATTTATTGCCTTACCGCGACGCACGACCGCGACGCACCCCAAAGTTTGAAGAAACGCAAATCTAGT</canonical_amplicon>
		<polymorphic_amplicon>AGTTGAGAAGCATCGTTGAGGGGGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTATTAAACAAATTAACGTTTAAAATTTCAGTTTTCTAAAGTTTTGAGCTTCAGAATAAGCCTAATCATGTCTAGATTTGGTCAACTTTCAGATTTATTGCCTTACCGCGACGCACGACCGCGACGCACCCCAAARTTTGAAGAAACGCAAATCTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26488</snp_id>
        <super_contig>c002300821.Contig1</super_contig>
        <contig_pos>48789</contig_pos>
        <strand></strand>
        <context>gtcgtgttta[G/A]gcttatttta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GACCGCGACGCACCCCAAAGTTTGAAGAAACGCAAATCTAGTCGTGTTTA</left_flank>
        <right_flank>GCTTATTTTAAAGCTCTCGACGTAAGAAACTCAAAAAATTAAAACTCATA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAATAAAATCAATGCATTAACCAGGGACTCAACATAGGGACCCAACATGAGAAGCAGGACATTGGTGCCACAAATTGAAGCGAAGGATGCGCAAAAAGTATACAGAATTGCATTCGAGTAGATGGTATCGAAAAAATGGTCTCGGAAAGAAGGATTGGTTCTTGGCTGGACCACGAGTTGGAGAGCTCTAAAGCGGCACTTTGGCATTTTGGCTGCTGATCAGTTGAGAAGCATCGTTGAGGGGGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTATTAAACAAATTAACGTTTAAAATTTCAGTTTTCTAAAGTTTTGAGCTTCAGAATAAGCCTAATCATGTCTAGATTTGGTCAACTTTCAGATTTATTGCCTTACCGCGACGCACGACCGCGACGCACCCCAAAGTTTGAAGAAACGCAAATCTAGTCGTGTTTAGGCTTATTTTAAAGCTCTCGACGTAAGAAACTCAAAAAATTAAAACTCATAAAGTTTGACCGAGATTGAAATGAGTTTTTTGAAATTTTCAAAATTCTGAAAATCTAATTGATGTTTCTCAAGCTTGAAATTTGAATGTCTGGATTTCTAAACTTCTGAGTTTTGAAATGAGCCTAATCACGCCTAGAATTGGACAACTTTCAAATTTGATGACTAACACGCGACGCACGACCGCGACGCACCCAAAAAAACCAAAGCAAGGTTGTTTAGGCTCATTTTGAAGCTCTCAACGTAAGAAACTCGAATAATCTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAAGTGGTTAACTAATAAAATGTTTATCAGGTTATCAGCAACATTTTACCAGTTAGCCACTTTTCGATATCTTTCACAGAAAATGAGATATATAGGCTCAAANNNNNNNNN</canonical>
            <polymorphic>CTCTAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAATAAAATCAATGCATTAACCAGGGACTCAACATAGGGACCCAACATGAGAAGCAGGACATTGGTGCCACAAATTGAAGCGAAGGATGCGCAAAAAGTATACAGAATTGCATTCGAGTAGATGGTATCGAAAAAATGGTCTCGGAAAGAAGGATTGGTTCTTGGCTGGACCACGAGTTGGAGAGCTCTAAAGCGGCACTTTGGCATTTTGGCTGCTGATCAGTTGAGAAGCATCGTTGAGGGGGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTATTAAACAAATTAACGTTTAAAATTTCAGTTTTCTAAAGTTTTGAGCTTCAGAATAAGCCTAATCATGTCTAGATTTGGTCAACTTTCAGATTTATTGCCTTACCGCGACGCACGACCGCGACGCACCCCAAAGTTTGAAGAAACGCAAATCTAGTCGTGTTTARGCTTATTTTAAAGCTCTCGACGTAAGAAACTCAAAAAATTAAAACTCATAAAGTTTGACCGAGATTGAAATGAGTTTTTTGAAATTTTCAAAATTCTGAAAATCTAATTGATGTTTCTCAAGCTTGAAATTTGAATGTCTGGATTTCTAAACTTCTGAGTTTTGAAATGAGCCTAATCACGCCTAGAATTGGACAACTTTCAAATTTGATGACTAACACGCGACGCACGACCGCGACGCACCCAAAAAAACCAAAGCAAGGTTGTTTAGGCTCATTTTGAAGCTCTCAACGTAAGAAACTCGAATAATCTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAAGTGGTTAACTAATAAAATGTTTATCAGGTTATCAGCAACATTTTACCAGTTAGCCACTTTTCGATATCTTTCACAGAAAATGAGATATATAGGCTCAAANNNNNNNNN</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>216 118 109 108 99 89 74 49 40 27 20 15 12 12 12</canonical_bands>
                <polymorphic_bands>216 120 118 109 99 89 74 49 40 27 20 15 12 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTGAGAAGCATCGTTGAG</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAATCGCAGTACATTATTC</pcr_primer_p2>
		<pcr_amplicon_size>788</pcr_amplicon_size>
		<canonical_amplicon>AGTTGAGAAGCATCGTTGAGGGGGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTATTAAACAAATTAACGTTTAAAATTTCAGTTTTCTAAAGTTTTGAGCTTCAGAATAAGCCTAATCATGTCTAGATTTGGTCAACTTTCAGATTTATTGCCTTACCGCGACGCACGACCGCGACGCACCCCAAAGTTTGAAGAAACGCAAATCTAGTCGTGTTTAGGCTTATTTTAAAGCTCTCGACG</canonical_amplicon>
		<polymorphic_amplicon>AGTTGAGAAGCATCGTTGAGGGGGAGGATCAAAGCATTCCGAATGGAGACCCTTCTGGAATTTATTAAACAAATTAACGTTTAAAATTTCAGTTTTCTAAAGTTTTGAGCTTCAGAATAAGCCTAATCATGTCTAGATTTGGTCAACTTTCAGATTTATTGCCTTACCGCGACGCACGACCGCGACGCACCCCAAAGTTTGAAGAAACGCAAATCTAGTCGTGTTTARGCTTATTTTAAAGCTCTCGACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26489</snp_id>
        <super_contig>c002400810.Contig3</super_contig>
        <contig_pos>9389</contig_pos>
        <strand>+</strand>
        <context>TTTTTGACTG[C/T]ACTCTTTCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCACGATCCAGATGCTGGTACATTTATAGCATTCGACAGTTTTTGACTG</left_flank>
        <right_flank>ACTCTTTCTATTGCGTATCGCAAATTGTACTTTTAATAAACTTCTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAGGTAATCGACCTAATTTTGAACCGTAAAATGATTCGAATGCCGAAATTTCAGATTCTTCAAGAAGAGAAACTCGTTGAGAACTCCGCCAAGATGGGAGAAGTGCTGATGAACAAGTTGAAGACGTTGCCAAAGGACGTTGTATCTCTTGTCAGAGGAAAAGGACTTTTCTGCGCCATCGTTATCAATAGCAGTGCGTTTTTGAAACAACATCAAACATCAAGATCACCTATAAATCTTTCAGAATACGATGCCTGGAAAGTGTGTTTGAAACTGAAAGAGAATGGACTCCTCGCCAAGAACACCCATGGAGACATCATCCGATTCGCCCCGCCCCTTTGTATCAACCAAGAGCAAGTCGAGCAGGCAGCTGATATCATTATCAAGACGATCACCGAATTCGCCAAGCAACATTAATAATCAGATTATTGTATTTCTTTAATTGTTCTCACGATCCAGATGCTGGTACATTTATAGCATTCGACAGTTTTTGACTGAACTCTTTCTATTGCGTATCGCAAATTGTACTTTTAATAAACTTCTTTTTTCTTTATCATTTCAAGGTCAAGAAATCAATTTTTCATGAATTTTTTTAATCGAAATGATAACGATTCATCGGTCGCAGAATTGGAACGAGAGGAACAGGTCTGCAGAAGAATATCCGTTAGTTTTTTATAATTTTCTCTAATCCTCTCAAAAACCCATAATCTCTCGGTGATAACGATGCCGGGTACCTGCCGCCGACATCCACTAAATTCGGTTTAAAAAGAGCGAGCGAAATGAGAAATCCTTCAACATTTCTCCAATTTCCATAGGAGATGTTCATTTCTACAATTCTACCTCATATTTTTTTAAACATTTTCTAAATAATTCTATATATTTTGTCTACTGCCTCATGTCGAGCTTATTCTGGAATCTTCTGTCCCTTCCGTCCAGCCATTCCTTGTGTCATATCTGCTGTCGTATGCCGGATTTTCGTTTTAAAATATAAATTTTTA</canonical>
            <polymorphic>TGGAGGTAATCGACCTAATTTTGAACCGTAAAATGATTCGAATGCCGAAATTTCAGATTCTTCAAGAAGAGAAACTCGTTGAGAACTCCGCCAAGATGGGAGAAGTGCTGATGAACAAGTTGAAGACGTTGCCAAAGGACGTTGTATCTCTTGTCAGAGGAAAAGGACTTTTCTGCGCCATCGTTATCAATAGCAGTGCGTTTTTGAAACAACATCAAACATCAAGATCACCTATAAATCTTTCAGAATACGATGCCTGGAAAGTGTGTTTGAAACTGAAAGAGAATGGACTCCTCGCCAAGAACACCCATGGAGACATCATCCGATTCGCCCCGCCCCTTTGTATCAACCAAGAGCAAGTCGAGCAGGCAGCTGATATCATTATCAAGACGATCACCGAATTCGCCAAGCAACATTAATAATCAGATTATTGTATTTCTTTAATTGTTCTCACGATCCAGATGCTGGTACATTTATAGCATTCGACAGTTTTTGACTGYACTCTTTCTATTGCGTATCGCAAATTGTACTTTTAATAAACTTCTTTTTTCTTTATCATTTCAAGGTCAAGAAATCAATTTTTCATGAATTTTTTTAATCGAAATGATAACGATTCATCGGTCGCAGAATTGGAACGAGAGGAACAGGTCTGCAGAAGAATATCCGTTAGTTTTTTATAATTTTCTCTAATCCTCTCAAAAACCCATAATCTCTCGGTGATAACGATGCCGGGTACCTGCCGCCGACATCCACTAAATTCGGTTTAAAAAGAGCGAGCGAAATGAGAAATCCTTCAACATTTCTCCAATTTCCATAGGAGATGTTCATTTCTACAATTCTACCTCATATTTTTTTAAACATTTTCTAAATAATTCTATATATTTTGTCTACTGCCTCATGTCGAGCTTATTCTGGAATCTTCTGTCCCTTCCGTCCAGCCATTCCTTGTGTCATATCTGCTGTCGTATGCCGGATTTTCGTTTTAAAATATAAATTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>503 287 210</canonical_bands>
                <polymorphic_bands>790 210</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAGCTGATATCATTATCAAGAC</pcr_primer_p1>
		<pcr_primer_p2>ATCGTTATCATTTCGATTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GCAGCTGATATCATTATCAAGACGATCACCGAATTCGCCAAGCAACATTAATAATCAGATTATTGTATTTCTTTAATTGTTCTCACGATCCAGATGCTGGTACATTTATAGCATTCGACAGTTTTTGACTGAACTCTTTCTATTGCGTATCGCAAATTGTACTTTTAATAAACTTCTTTTTTCTTTATCATTTCAAGGTCAAGAAATCAATTTTTCATGAATTTTTTTAATCGAAATGATAACGAT</canonical_amplicon>
		<polymorphic_amplicon>GCAGCTGATATCATTATCAAGACGATCACCGAATTCGCCAAGCAACATTAATAATCAGATTATTGTATTTCTTTAATTGTTCTCACGATCCAGATGCTGGTACATTTATAGCATTCGACAGTTTTTGACTGYACTCTTTCTATTGCGTATCGCAAATTGTACTTTTAATAAACTTCTTTTTTCTTTATCATTTCAAGGTCAAGAAATCAATTTTTCATGAATTTTTTTAATCGAAATGATAACGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26490</snp_id>
        <super_contig>c002400810.Contig3</super_contig>
        <contig_pos>9704</contig_pos>
        <strand>+</strand>
        <context>CCAATTTCCA[A/T]WGGAGATGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAAAAGAGCGAGCGAAATGAGAAATCCTTCAACATTTCTCCAATTTCCA</left_flank>
        <right_flank>AGGAGATGTTCATTTCTACAATTCTACCTCATATTTTTTTAAACATTTTC</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATCATCCGATTCGCCCCGCCCCTTTGTATCAACCAAGAGCAAGTCGAGCAGGCAGCTGATATCATTATCAAGACGATCACCGAATTCGCCAAGCAACATTAATAATCAGATTATTGTATTTCTTTAATTGTTCTCACGATCCAGATGCTGGTACATTTATAGCATTCGACAGTTTTTGACTGAACTCTTTCTATTGCGTATCGCAAATTGTACTTTTAATAAACTTCTTTTTTCTTTATCATTTCAAGGTCAAGAAATCAATTTTTCATGAATTTTTTTAATCGAAATGATAACGATTCATCGGTCGCAGAATTGGAACGAGAGGAACAGGTCTGCAGAAGAATATCCGTTAGTTTTTTATAATTTTCTCTAATCCTCTCAAAAACCCATAATCTCTCGGTGATAACGATGCCGGGTACCTGCCGCCGACATCCACTAAATTCGGTTTAAAAAGAGCGAGCGAAATGAGAAATCCTTCAACATTTCTCCAATTTCCATAGGAGATGTTCATTTCTACAATTCTACCTCATATTTTTTTAAACATTTTCTAAATAATTCTATATATTTTGTCTACTGCCTCATGTCGAGCTTATTCTGGAATCTTCTGTCCCTTCCGTCCAGCCATTCCTTGTGTCATATCTGCTGTCGTATGCCGGATTTTCGTTTTAAAATATAAATTTTTAATAATTCTAATAATTATTAAACTAACTCTTTTTTACATATCAATGCAGCTAGCTATTTTGGTGCTACTTAGTTGTTTTGTATTTAATAAGAAAAAAAACGAATAATAAAGAATTGTGACGGAGAATTCGAGTTTTTTTCTCTTTTTTCCGGGATATTTCCGAAATTTTTTTTCAGAACTTGAACAACAGTATCTCAAAGGCGCATACGCAAAGCTTCCTCTCGGGTTTCGAGCGGAAATCCTTTTTTTAGCGTTTTTGAGATCTTTATTTCCATTTTTAACTATTTTTCTAGCTTTCAAGAAGGGAAAGTGGGAG</canonical>
            <polymorphic>ACATCATCCGATTCGCCCCGCCCCTTTGTATCAACCAAGAGCAAGTCGAGCAGGCAGCTGATATCATTATCAAGACGATCACCGAATTCGCCAAGCAACATTAATAATCAGATTATTGTATTTCTTTAATTGTTCTCACGATCCAGATGCTGGTACATTTATAGCATTCGACAGTTTTTGACTGAACTCTTTCTATTGCGTATCGCAAATTGTACTTTTAATAAACTTCTTTTTTCTTTATCATTTCAAGGTCAAGAAATCAATTTTTCATGAATTTTTTTAATCGAAATGATAACGATTCATCGGTCGCAGAATTGGAACGAGAGGAACAGGTCTGCAGAAGAATATCCGTTAGTTTTTTATAATTTTCTCTAATCCTCTCAAAAACCCATAATCTCTCGGTGATAACGATGCCGGGTACCTGCCGCCGACATCCACTAAATTCGGTTTAAAAAGAGCGAGCGAAATGAGAAATCCTTCAACATTTCTCCAATTTCCAWAGGAGATGTTCATTTCTACAATTCTACCTCATATTTTTTTAAACATTTTCTAAATAATTCTATATATTTTGTCTACTGCCTCATGTCGAGCTTATTCTGGAATCTTCTGTCCCTTCCGTCCAGCCATTCCTTGTGTCATATCTGCTGTCGTATGCCGGATTTTCGTTTTAAAATATAAATTTTTAATAATTCTAATAATTATTAAACTAACTCTTTTTTACATATCAATGCAGCTAGCTATTTTGGTGCTACTTAGTTGTTTTGTATTTAATAAGAAAAAAAACGAATAATAAAGAATTGTGACGGAGAATTCGAGTTTTTTTCTCTTTTTTCCGGGATATTTCCGAAATTTTTTTTCAGAACTTGAACAACAGTATCTCAAAGGCGCATACGCAAAGCTTCCTCTCGGGTTTCGAGCGGAAATCCTTTTTTTAGCGTTTTTGAGATCTTTATTTCCATTTTTAACTATTTTTCTAGCTTTCAAGAAGGGAAAGTGGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTCTCTAATCCTCTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACAGAAGATTCCAGAATAAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATTTTCTCTAATCCTCTCAAAAACCCATAATCTCTCGGTGATAACGATGCCGGGTACCTGCCGCCGACATCCACTAAATTCGGTTTAAAAAGAGCGAGCGAAATGAGAAATCCTTCAACATTTCTCCAATTTCCATAGGAGATGTTCATTTCTACAATTCTACCTCATATTTTTTTAAACATTTTCTAAATAATTCTATATATTTTGTCTACTGCCTCATGTCGAGCTTATTCTGGAATCTTCTGT</canonical_amplicon>
		<polymorphic_amplicon>AATTTTCTCTAATCCTCTCAAAAACCCATAATCTCTCGGTGATAACGATGCCGGGTACCTGCCGCCGACATCCACTAAATTCGGTTTAAAAAGAGCGAGCGAAATGAGAAATCCTTCAACATTTCTCCAATTTCCAWAGGAGATGTTCATTTCTACAATTCTACCTCATATTTTTTTAAACATTTTCTAAATAATTCTATATATTTTGTCTACTGCCTCATGTCGAGCTTATTCTGGAATCTTCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26491</snp_id>
        <super_contig>c002400810.Contig3</super_contig>
        <contig_pos>9705</contig_pos>
        <strand>+</strand>
        <context>CAATTTCCAW[A/T]GGAGATGTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAAGAGCGAGCGAAATGAGAAATCCTTCAACATTTCTCCAATTTCCAT</left_flank>
        <right_flank>GGAGATGTTCATTTCTACAATTCTACCTCATATTTTTTTAAACATTTTCT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCATCCGATTCGCCCCGCCCCTTTGTATCAACCAAGAGCAAGTCGAGCAGGCAGCTGATATCATTATCAAGACGATCACCGAATTCGCCAAGCAACATTAATAATCAGATTATTGTATTTCTTTAATTGTTCTCACGATCCAGATGCTGGTACATTTATAGCATTCGACAGTTTTTGACTGAACTCTTTCTATTGCGTATCGCAAATTGTACTTTTAATAAACTTCTTTTTTCTTTATCATTTCAAGGTCAAGAAATCAATTTTTCATGAATTTTTTTAATCGAAATGATAACGATTCATCGGTCGCAGAATTGGAACGAGAGGAACAGGTCTGCAGAAGAATATCCGTTAGTTTTTTATAATTTTCTCTAATCCTCTCAAAAACCCATAATCTCTCGGTGATAACGATGCCGGGTACCTGCCGCCGACATCCACTAAATTCGGTTTAAAAAGAGCGAGCGAAATGAGAAATCCTTCAACATTTCTCCAATTTCCATAGGAGATGTTCATTTCTACAATTCTACCTCATATTTTTTTAAACATTTTCTAAATAATTCTATATATTTTGTCTACTGCCTCATGTCGAGCTTATTCTGGAATCTTCTGTCCCTTCCGTCCAGCCATTCCTTGTGTCATATCTGCTGTCGTATGCCGGATTTTCGTTTTAAAATATAAATTTTTAATAATTCTAATAATTATTAAACTAACTCTTTTTTACATATCAATGCAGCTAGCTATTTTGGTGCTACTTAGTTGTTTTGTATTTAATAAGAAAAAAAACGAATAATAAAGAATTGTGACGGAGAATTCGAGTTTTTTTCTCTTTTTTCCGGGATATTTCCGAAATTTTTTTTCAGAACTTGAACAACAGTATCTCAAAGGCGCATACGCAAAGCTTCCTCTCGGGTTTCGAGCGGAAATCCTTTTTTTAGCGTTTTTGAGATCTTTATTTCCATTTTTAACTATTTTTCTAGCTTTCAAGAAGGGAAAGTGGGAGT</canonical>
            <polymorphic>CATCATCCGATTCGCCCCGCCCCTTTGTATCAACCAAGAGCAAGTCGAGCAGGCAGCTGATATCATTATCAAGACGATCACCGAATTCGCCAAGCAACATTAATAATCAGATTATTGTATTTCTTTAATTGTTCTCACGATCCAGATGCTGGTACATTTATAGCATTCGACAGTTTTTGACTGAACTCTTTCTATTGCGTATCGCAAATTGTACTTTTAATAAACTTCTTTTTTCTTTATCATTTCAAGGTCAAGAAATCAATTTTTCATGAATTTTTTTAATCGAAATGATAACGATTCATCGGTCGCAGAATTGGAACGAGAGGAACAGGTCTGCAGAAGAATATCCGTTAGTTTTTTATAATTTTCTCTAATCCTCTCAAAAACCCATAATCTCTCGGTGATAACGATGCCGGGTACCTGCCGCCGACATCCACTAAATTCGGTTTAAAAAGAGCGAGCGAAATGAGAAATCCTTCAACATTTCTCCAATTTCCATWGGAGATGTTCATTTCTACAATTCTACCTCATATTTTTTTAAACATTTTCTAAATAATTCTATATATTTTGTCTACTGCCTCATGTCGAGCTTATTCTGGAATCTTCTGTCCCTTCCGTCCAGCCATTCCTTGTGTCATATCTGCTGTCGTATGCCGGATTTTCGTTTTAAAATATAAATTTTTAATAATTCTAATAATTATTAAACTAACTCTTTTTTACATATCAATGCAGCTAGCTATTTTGGTGCTACTTAGTTGTTTTGTATTTAATAAGAAAAAAAACGAATAATAAAGAATTGTGACGGAGAATTCGAGTTTTTTTCTCTTTTTTCCGGGATATTTCCGAAATTTTTTTTCAGAACTTGAACAACAGTATCTCAAAGGCGCATACGCAAAGCTTCCTCTCGGGTTTCGAGCGGAAATCCTTTTTTTAGCGTTTTTGAGATCTTTATTTCCATTTTTAACTATTTTTCTAGCTTTCAAGAAGGGAAAGTGGGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTCTCTAATCCTCTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACAGAAGATTCCAGAATAAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATTTTCTCTAATCCTCTCAAAAACCCATAATCTCTCGGTGATAACGATGCCGGGTACCTGCCGCCGACATCCACTAAATTCGGTTTAAAAAGAGCGAGCGAAATGAGAAATCCTTCAACATTTCTCCAATTTCCATAGGAGATGTTCATTTCTACAATTCTACCTCATATTTTTTTAAACATTTTCTAAATAATTCTATATATTTTGTCTACTGCCTCATGTCGAGCTTATTCTGGAATCTTCTGT</canonical_amplicon>
		<polymorphic_amplicon>AATTTTCTCTAATCCTCTCAAAAACCCATAATCTCTCGGTGATAACGATGCCGGGTACCTGCCGCCGACATCCACTAAATTCGGTTTAAAAAGAGCGAGCGAAATGAGAAATCCTTCAACATTTCTCCAATTTCCATWGGAGATGTTCATTTCTACAATTCTACCTCATATTTTTTTAAACATTTTCTAAATAATTCTATATATTTTGTCTACTGCCTCATGTCGAGCTTATTCTGGAATCTTCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26492</snp_id>
        <super_contig>c002400810.Contig3</super_contig>
        <contig_pos>9744</contig_pos>
        <strand>+</strand>
        <context>CATATTTTTT[A/T]AAAYATTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCAATTTCCATAGGAGATGTTCATTTCTACAATTCTACCTCATATTTTTT</left_flank>
        <right_flank>AAACATTTTCTAAATAATTCTATATATTTTGTCTACTGCCTCATGTCGAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAAGTCGAGCAGGCAGCTGATATCATTATCAAGACGATCACCGAATTCGCCAAGCAACATTAATAATCAGATTATTGTATTTCTTTAATTGTTCTCACGATCCAGATGCTGGTACATTTATAGCATTCGACAGTTTTTGACTGAACTCTTTCTATTGCGTATCGCAAATTGTACTTTTAATAAACTTCTTTTTTCTTTATCATTTCAAGGTCAAGAAATCAATTTTTCATGAATTTTTTTAATCGAAATGATAACGATTCATCGGTCGCAGAATTGGAACGAGAGGAACAGGTCTGCAGAAGAATATCCGTTAGTTTTTTATAATTTTCTCTAATCCTCTCAAAAACCCATAATCTCTCGGTGATAACGATGCCGGGTACCTGCCGCCGACATCCACTAAATTCGGTTTAAAAAGAGCGAGCGAAATGAGAAATCCTTCAACATTTCTCCAATTTCCATAGGAGATGTTCATTTCTACAATTCTACCTCATATTTTTTTAAACATTTTCTAAATAATTCTATATATTTTGTCTACTGCCTCATGTCGAGCTTATTCTGGAATCTTCTGTCCCTTCCGTCCAGCCATTCCTTGTGTCATATCTGCTGTCGTATGCCGGATTTTCGTTTTAAAATATAAATTTTTAATAATTCTAATAATTATTAAACTAACTCTTTTTTACATATCAATGCAGCTAGCTATTTTGGTGCTACTTAGTTGTTTTGTATTTAATAAGAAAAAAAACGAATAATAAAGAATTGTGACGGAGAATTCGAGTTTTTTTCTCTTTTTTCCGGGATATTTCCGAAATTTTTTTTCAGAACTTGAACAACAGTATCTCAAAGGCGCATACGCAAAGCTTCCTCTCGGGTTTCGAGCGGAAATCCTTTTTTTAGCGTTTTTGAGATCTTTATTTCCATTTTTAACTATTTTTCTAGCTTTCAAGAAGGGAAAGTGGGAGTTCTTAAGTTTAAATCGTTGAAAATCAGAATATTCCGGTA</canonical>
            <polymorphic>GCAAGTCGAGCAGGCAGCTGATATCATTATCAAGACGATCACCGAATTCGCCAAGCAACATTAATAATCAGATTATTGTATTTCTTTAATTGTTCTCACGATCCAGATGCTGGTACATTTATAGCATTCGACAGTTTTTGACTGAACTCTTTCTATTGCGTATCGCAAATTGTACTTTTAATAAACTTCTTTTTTCTTTATCATTTCAAGGTCAAGAAATCAATTTTTCATGAATTTTTTTAATCGAAATGATAACGATTCATCGGTCGCAGAATTGGAACGAGAGGAACAGGTCTGCAGAAGAATATCCGTTAGTTTTTTATAATTTTCTCTAATCCTCTCAAAAACCCATAATCTCTCGGTGATAACGATGCCGGGTACCTGCCGCCGACATCCACTAAATTCGGTTTAAAAAGAGCGAGCGAAATGAGAAATCCTTCAACATTTCTCCAATTTCCATAGGAGATGTTCATTTCTACAATTCTACCTCATATTTTTTWAAACATTTTCTAAATAATTCTATATATTTTGTCTACTGCCTCATGTCGAGCTTATTCTGGAATCTTCTGTCCCTTCCGTCCAGCCATTCCTTGTGTCATATCTGCTGTCGTATGCCGGATTTTCGTTTTAAAATATAAATTTTTAATAATTCTAATAATTATTAAACTAACTCTTTTTTACATATCAATGCAGCTAGCTATTTTGGTGCTACTTAGTTGTTTTGTATTTAATAAGAAAAAAAACGAATAATAAAGAATTGTGACGGAGAATTCGAGTTTTTTTCTCTTTTTTCCGGGATATTTCCGAAATTTTTTTTCAGAACTTGAACAACAGTATCTCAAAGGCGCATACGCAAAGCTTCCTCTCGGGTTTCGAGCGGAAATCCTTTTTTTAGCGTTTTTGAGATCTTTATTTCCATTTTTAACTATTTTTCTAGCTTTCAAGAAGGGAAAGTGGGAGTTCTTAAGTTTAAATCGTTGAAAATCAGAATATTCCGGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>410 342 129 90 29</canonical_bands>
                <polymorphic_bands>410 342 219 29</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>194 169 129 92 90 66 62 61 42 30 25 19 15 6</canonical_bands>
                <polymorphic_bands>219 194 169 92 66 62 61 42 30 25 19 15 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTTCTCTAATCCTCTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACAGAAGATTCCAGAATAAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATTTTCTCTAATCCTCTCAAAAACCCATAATCTCTCGGTGATAACGATGCCGGGTACCTGCCGCCGACATCCACTAAATTCGGTTTAAAAAGAGCGAGCGAAATGAGAAATCCTTCAACATTTCTCCAATTTCCATAGGAGATGTTCATTTCTACAATTCTACCTCATATTTTTTTAAACATTTTCTAAATAATTCTATATATTTTGTCTACTGCCTCATGTCGAGCTTATTCTGGAATCTTCTGT</canonical_amplicon>
		<polymorphic_amplicon>AATTTTCTCTAATCCTCTCAAAAACCCATAATCTCTCGGTGATAACGATGCCGGGTACCTGCCGCCGACATCCACTAAATTCGGTTTAAAAAGAGCGAGCGAAATGAGAAATCCTTCAACATTTCTCCAATTTCCATAGGAGATGTTCATTTCTACAATTCTACCTCATATTTTTTWAAACATTTTCTAAATAATTCTATATATTTTGTCTACTGCCTCATGTCGAGCTTATTCTGGAATCTTCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26493</snp_id>
        <super_contig>c002400810.Contig3</super_contig>
        <contig_pos>9748</contig_pos>
        <strand>+</strand>
        <context>TTTTTTWAAA[C/T]ATTTTCTAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCCATAGGAGATGTTCATTTCTACAATTCTACCTCATATTTTTTTAAA</left_flank>
        <right_flank>ATTTTCTAAATAATTCTATATATTTTGTCTACTGCCTCATGTCGAGCTTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCGAGCAGGCAGCTGATATCATTATCAAGACGATCACCGAATTCGCCAAGCAACATTAATAATCAGATTATTGTATTTCTTTAATTGTTCTCACGATCCAGATGCTGGTACATTTATAGCATTCGACAGTTTTTGACTGAACTCTTTCTATTGCGTATCGCAAATTGTACTTTTAATAAACTTCTTTTTTCTTTATCATTTCAAGGTCAAGAAATCAATTTTTCATGAATTTTTTTAATCGAAATGATAACGATTCATCGGTCGCAGAATTGGAACGAGAGGAACAGGTCTGCAGAAGAATATCCGTTAGTTTTTTATAATTTTCTCTAATCCTCTCAAAAACCCATAATCTCTCGGTGATAACGATGCCGGGTACCTGCCGCCGACATCCACTAAATTCGGTTTAAAAAGAGCGAGCGAAATGAGAAATCCTTCAACATTTCTCCAATTTCCATAGGAGATGTTCATTTCTACAATTCTACCTCATATTTTTTTAAACATTTTCTAAATAATTCTATATATTTTGTCTACTGCCTCATGTCGAGCTTATTCTGGAATCTTCTGTCCCTTCCGTCCAGCCATTCCTTGTGTCATATCTGCTGTCGTATGCCGGATTTTCGTTTTAAAATATAAATTTTTAATAATTCTAATAATTATTAAACTAACTCTTTTTTACATATCAATGCAGCTAGCTATTTTGGTGCTACTTAGTTGTTTTGTATTTAATAAGAAAAAAAACGAATAATAAAGAATTGTGACGGAGAATTCGAGTTTTTTTCTCTTTTTTCCGGGATATTTCCGAAATTTTTTTTCAGAACTTGAACAACAGTATCTCAAAGGCGCATACGCAAAGCTTCCTCTCGGGTTTCGAGCGGAAATCCTTTTTTTAGCGTTTTTGAGATCTTTATTTCCATTTTTAACTATTTTTCTAGCTTTCAAGAAGGGAAAGTGGGAGTTCTTAAGTTTAAATCGTTGAAAATCAGAATATTCCGGTATTCT</canonical>
            <polymorphic>GTCGAGCAGGCAGCTGATATCATTATCAAGACGATCACCGAATTCGCCAAGCAACATTAATAATCAGATTATTGTATTTCTTTAATTGTTCTCACGATCCAGATGCTGGTACATTTATAGCATTCGACAGTTTTTGACTGAACTCTTTCTATTGCGTATCGCAAATTGTACTTTTAATAAACTTCTTTTTTCTTTATCATTTCAAGGTCAAGAAATCAATTTTTCATGAATTTTTTTAATCGAAATGATAACGATTCATCGGTCGCAGAATTGGAACGAGAGGAACAGGTCTGCAGAAGAATATCCGTTAGTTTTTTATAATTTTCTCTAATCCTCTCAAAAACCCATAATCTCTCGGTGATAACGATGCCGGGTACCTGCCGCCGACATCCACTAAATTCGGTTTAAAAAGAGCGAGCGAAATGAGAAATCCTTCAACATTTCTCCAATTTCCATAGGAGATGTTCATTTCTACAATTCTACCTCATATTTTTTTAAAYATTTTCTAAATAATTCTATATATTTTGTCTACTGCCTCATGTCGAGCTTATTCTGGAATCTTCTGTCCCTTCCGTCCAGCCATTCCTTGTGTCATATCTGCTGTCGTATGCCGGATTTTCGTTTTAAAATATAAATTTTTAATAATTCTAATAATTATTAAACTAACTCTTTTTTACATATCAATGCAGCTAGCTATTTTGGTGCTACTTAGTTGTTTTGTATTTAATAAGAAAAAAAACGAATAATAAAGAATTGTGACGGAGAATTCGAGTTTTTTTCTCTTTTTTCCGGGATATTTCCGAAATTTTTTTTCAGAACTTGAACAACAGTATCTCAAAGGCGCATACGCAAAGCTTCCTCTCGGGTTTCGAGCGGAAATCCTTTTTTTAGCGTTTTTGAGATCTTTATTTCCATTTTTAACTATTTTTCTAGCTTTCAAGAAGGGAAAGTGGGAGTTCTTAAGTTTAAATCGTTGAAAATCAGAATATTCCGGTATTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTCTCTAATCCTCTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACAGAAGATTCCAGAATAAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATTTTCTCTAATCCTCTCAAAAACCCATAATCTCTCGGTGATAACGATGCCGGGTACCTGCCGCCGACATCCACTAAATTCGGTTTAAAAAGAGCGAGCGAAATGAGAAATCCTTCAACATTTCTCCAATTTCCATAGGAGATGTTCATTTCTACAATTCTACCTCATATTTTTTTAAACATTTTCTAAATAATTCTATATATTTTGTCTACTGCCTCATGTCGAGCTTATTCTGGAATCTTCTGT</canonical_amplicon>
		<polymorphic_amplicon>AATTTTCTCTAATCCTCTCAAAAACCCATAATCTCTCGGTGATAACGATGCCGGGTACCTGCCGCCGACATCCACTAAATTCGGTTTAAAAAGAGCGAGCGAAATGAGAAATCCTTCAACATTTCTCCAATTTCCATAGGAGATGTTCATTTCTACAATTCTACCTCATATTTTTTTAAAYATTTTCTAAATAATTCTATATATTTTGTCTACTGCCTCATGTCGAGCTTATTCTGGAATCTTCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26494</snp_id>
        <super_contig>c002400810.Contig3</super_contig>
        <contig_pos>9763</contig_pos>
        <strand>+</strand>
        <context>TCTAAATAAT[A/T]CTATATATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCATTTCTACAATTCTACCTCATATTTTTTTAAACATTTTCTAAATAAT</left_flank>
        <right_flank>CTATATATTTTGTCTACTGCCTCATGTCGAGCTTATTCTGGAATCTTCTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATATCATTATCAAGACGATCACCGAATTCGCCAAGCAACATTAATAATCAGATTATTGTATTTCTTTAATTGTTCTCACGATCCAGATGCTGGTACATTTATAGCATTCGACAGTTTTTGACTGAACTCTTTCTATTGCGTATCGCAAATTGTACTTTTAATAAACTTCTTTTTTCTTTATCATTTCAAGGTCAAGAAATCAATTTTTCATGAATTTTTTTAATCGAAATGATAACGATTCATCGGTCGCAGAATTGGAACGAGAGGAACAGGTCTGCAGAAGAATATCCGTTAGTTTTTTATAATTTTCTCTAATCCTCTCAAAAACCCATAATCTCTCGGTGATAACGATGCCGGGTACCTGCCGCCGACATCCACTAAATTCGGTTTAAAAAGAGCGAGCGAAATGAGAAATCCTTCAACATTTCTCCAATTTCCATAGGAGATGTTCATTTCTACAATTCTACCTCATATTTTTTTAAACATTTTCTAAATAATTCTATATATTTTGTCTACTGCCTCATGTCGAGCTTATTCTGGAATCTTCTGTCCCTTCCGTCCAGCCATTCCTTGTGTCATATCTGCTGTCGTATGCCGGATTTTCGTTTTAAAATATAAATTTTTAATAATTCTAATAATTATTAAACTAACTCTTTTTTACATATCAATGCAGCTAGCTATTTTGGTGCTACTTAGTTGTTTTGTATTTAATAAGAAAAAAAACGAATAATAAAGAATTGTGACGGAGAATTCGAGTTTTTTTCTCTTTTTTCCGGGATATTTCCGAAATTTTTTTTCAGAACTTGAACAACAGTATCTCAAAGGCGCATACGCAAAGCTTCCTCTCGGGTTTCGAGCGGAAATCCTTTTTTTAGCGTTTTTGAGATCTTTATTTCCATTTTTAACTATTTTTCTAGCTTTCAAGAAGGGAAAGTGGGAGTTCTTAAGTTTAAATCGTTGAAAATCAGAATATTCCGGTATTCTGATCATTTTCAGAAC</canonical>
            <polymorphic>GATATCATTATCAAGACGATCACCGAATTCGCCAAGCAACATTAATAATCAGATTATTGTATTTCTTTAATTGTTCTCACGATCCAGATGCTGGTACATTTATAGCATTCGACAGTTTTTGACTGAACTCTTTCTATTGCGTATCGCAAATTGTACTTTTAATAAACTTCTTTTTTCTTTATCATTTCAAGGTCAAGAAATCAATTTTTCATGAATTTTTTTAATCGAAATGATAACGATTCATCGGTCGCAGAATTGGAACGAGAGGAACAGGTCTGCAGAAGAATATCCGTTAGTTTTTTATAATTTTCTCTAATCCTCTCAAAAACCCATAATCTCTCGGTGATAACGATGCCGGGTACCTGCCGCCGACATCCACTAAATTCGGTTTAAAAAGAGCGAGCGAAATGAGAAATCCTTCAACATTTCTCCAATTTCCATAGGAGATGTTCATTTCTACAATTCTACCTCATATTTTTTTAAACATTTTCTAAATAATWCTATATATTTTGTCTACTGCCTCATGTCGAGCTTATTCTGGAATCTTCTGTCCCTTCCGTCCAGCCATTCCTTGTGTCATATCTGCTGTCGTATGCCGGATTTTCGTTTTAAAATATAAATTTTTAATAATTCTAATAATTATTAAACTAACTCTTTTTTACATATCAATGCAGCTAGCTATTTTGGTGCTACTTAGTTGTTTTGTATTTAATAAGAAAAAAAACGAATAATAAAGAATTGTGACGGAGAATTCGAGTTTTTTTCTCTTTTTTCCGGGATATTTCCGAAATTTTTTTTCAGAACTTGAACAACAGTATCTCAAAGGCGCATACGCAAAGCTTCCTCTCGGGTTTCGAGCGGAAATCCTTTTTTTAGCGTTTTTGAGATCTTTATTTCCATTTTTAACTATTTTTCTAGCTTTCAAGAAGGGAAAGTGGGAGTTCTTAAGTTTAAATCGTTGAAAATCAGAATATTCCGGTATTCTGATCATTTTCAGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>212 122 99 80 77 54 51 51 43 40 39 36 28 25 13 11 10 9</canonical_bands>
                <polymorphic_bands>212 158 99 80 77 54 51 51 43 40 39 28 25 13 11 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTTCTCTAATCCTCTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GGACAGAAGATTCCAGAATAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTTTCTCTAATCCTCTCAAAAACCCATAATCTCTCGGTGATAACGATGCCGGGTACCTGCCGCCGACATCCACTAAATTCGGTTTAAAAAGAGCGAGCGAAATGAGAAATCCTTCAACATTTCTCCAATTTCCATAGGAGATGTTCATTTCTACAATTCTACCTCATATTTTTTTAAACATTTTCTAAATAATTCTATATATTTTGTCTACTGCCTCATGTCGAGCTTATTCTGGAATCTTCTGTCC</canonical_amplicon>
		<polymorphic_amplicon>AATTTTCTCTAATCCTCTCAAAAACCCATAATCTCTCGGTGATAACGATGCCGGGTACCTGCCGCCGACATCCACTAAATTCGGTTTAAAAAGAGCGAGCGAAATGAGAAATCCTTCAACATTTCTCCAATTTCCATAGGAGATGTTCATTTCTACAATTCTACCTCATATTTTTTTAAACATTTTCTAAATAATWCTATATATTTTGTCTACTGCCTCATGTCGAGCTTATTCTGGAATCTTCTGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26495</snp_id>
        <super_contig>c002400810.Contig3</super_contig>
        <contig_pos>9783</contig_pos>
        <strand>+</strand>
        <context>TTGTCTACTG[A/C]YTCATGTCGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCATATTTTTTTAAACATTTTCTAAATAATTCTATATATTTTGTCTACTG</left_flank>
        <right_flank>CTCATGTCGAGCTTATTCTGGAATCTTCTGTCCCTTCCGTCCAGCCATTC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACCGAATTCGCCAAGCAACATTAATAATCAGATTATTGTATTTCTTTAATTGTTCTCACGATCCAGATGCTGGTACATTTATAGCATTCGACAGTTTTTGACTGAACTCTTTCTATTGCGTATCGCAAATTGTACTTTTAATAAACTTCTTTTTTCTTTATCATTTCAAGGTCAAGAAATCAATTTTTCATGAATTTTTTTAATCGAAATGATAACGATTCATCGGTCGCAGAATTGGAACGAGAGGAACAGGTCTGCAGAAGAATATCCGTTAGTTTTTTATAATTTTCTCTAATCCTCTCAAAAACCCATAATCTCTCGGTGATAACGATGCCGGGTACCTGCCGCCGACATCCACTAAATTCGGTTTAAAAAGAGCGAGCGAAATGAGAAATCCTTCAACATTTCTCCAATTTCCATAGGAGATGTTCATTTCTACAATTCTACCTCATATTTTTTTAAACATTTTCTAAATAATTCTATATATTTTGTCTACTGCCTCATGTCGAGCTTATTCTGGAATCTTCTGTCCCTTCCGTCCAGCCATTCCTTGTGTCATATCTGCTGTCGTATGCCGGATTTTCGTTTTAAAATATAAATTTTTAATAATTCTAATAATTATTAAACTAACTCTTTTTTACATATCAATGCAGCTAGCTATTTTGGTGCTACTTAGTTGTTTTGTATTTAATAAGAAAAAAAACGAATAATAAAGAATTGTGACGGAGAATTCGAGTTTTTTTCTCTTTTTTCCGGGATATTTCCGAAATTTTTTTTCAGAACTTGAACAACAGTATCTCAAAGGCGCATACGCAAAGCTTCCTCTCGGGTTTCGAGCGGAAATCCTTTTTTTAGCGTTTTTGAGATCTTTATTTCCATTTTTAACTATTTTTCTAGCTTTCAAGAAGGGAAAGTGGGAGTTCTTAAGTTTAAATCGTTGAAAATCAGAATATTCCGGTATTCTGATCATTTTCAGAACATTTCCGGGGGATACNACGA</canonical>
            <polymorphic>CACCGAATTCGCCAAGCAACATTAATAATCAGATTATTGTATTTCTTTAATTGTTCTCACGATCCAGATGCTGGTACATTTATAGCATTCGACAGTTTTTGACTGAACTCTTTCTATTGCGTATCGCAAATTGTACTTTTAATAAACTTCTTTTTTCTTTATCATTTCAAGGTCAAGAAATCAATTTTTCATGAATTTTTTTAATCGAAATGATAACGATTCATCGGTCGCAGAATTGGAACGAGAGGAACAGGTCTGCAGAAGAATATCCGTTAGTTTTTTATAATTTTCTCTAATCCTCTCAAAAACCCATAATCTCTCGGTGATAACGATGCCGGGTACCTGCCGCCGACATCCACTAAATTCGGTTTAAAAAGAGCGAGCGAAATGAGAAATCCTTCAACATTTCTCCAATTTCCATAGGAGATGTTCATTTCTACAATTCTACCTCATATTTTTTTAAACATTTTCTAAATAATTCTATATATTTTGTCTACTGMCTCATGTCGAGCTTATTCTGGAATCTTCTGTCCCTTCCGTCCAGCCATTCCTTGTGTCATATCTGCTGTCGTATGCCGGATTTTCGTTTTAAAATATAAATTTTTAATAATTCTAATAATTATTAAACTAACTCTTTTTTACATATCAATGCAGCTAGCTATTTTGGTGCTACTTAGTTGTTTTGTATTTAATAAGAAAAAAAACGAATAATAAAGAATTGTGACGGAGAATTCGAGTTTTTTTCTCTTTTTTCCGGGATATTTCCGAAATTTTTTTTCAGAACTTGAACAACAGTATCTCAAAGGCGCATACGCAAAGCTTCCTCTCGGGTTTCGAGCGGAAATCCTTTTTTTAGCGTTTTTGAGATCTTTATTTCCATTTTTAACTATTTTTCTAGCTTTCAAGAAGGGAAAGTGGGAGTTCTTAAGTTTAAATCGTTGAAAATCAGAATATTCCGGTATTCTGATCATTTTCAGAACATTTCCGGGGGATACNACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATGTTCATTTCTACAATTCTACC</pcr_primer_p1>
		<pcr_primer_p2>TAGCTAGCTGCATTGATATGTAA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>AGATGTTCATTTCTACAATTCTACCTCATATTTTTTTAAACATTTTCTAAATAATTCTATATATTTTGTCTACTGCCTCATGTCGAGCTTATTCTGGAATCTTCTGTCCCTTCCGTCCAGCCATTCCTTGTGTCATATCTGCTGTCGTATGCCGGATTTTCGTTTTAAAATATAAATTTTTAATAATTCTAATAATTATTAAACTAACTCTTTTTTACATATCAATGCAGCTAGCTA</canonical_amplicon>
		<polymorphic_amplicon>AGATGTTCATTTCTACAATTCTACCTCATATTTTTTTAAACATTTTCTAAATAATTCTATATATTTTGTCTACTGMCTCATGTCGAGCTTATTCTGGAATCTTCTGTCCCTTCCGTCCAGCCATTCCTTGTGTCATATCTGCTGTCGTATGCCGGATTTTCGTTTTAAAATATAAATTTTTAATAATTCTAATAATTATTAAACTAACTCTTTTTTACATATCAATGCAGCTAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26496</snp_id>
        <super_contig>c002400810.Contig3</super_contig>
        <contig_pos>9784</contig_pos>
        <strand>+</strand>
        <context>TGTCTACTGM[C/T]TCATGTCGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATATTTTTTTAAACATTTTCTAAATAATTCTATATATTTTGTCTACTGC</left_flank>
        <right_flank>TCATGTCGAGCTTATTCTGGAATCTTCTGTCCCTTCCGTCCAGCCATTCC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCGAATTCGCCAAGCAACATTAATAATCAGATTATTGTATTTCTTTAATTGTTCTCACGATCCAGATGCTGGTACATTTATAGCATTCGACAGTTTTTGACTGAACTCTTTCTATTGCGTATCGCAAATTGTACTTTTAATAAACTTCTTTTTTCTTTATCATTTCAAGGTCAAGAAATCAATTTTTCATGAATTTTTTTAATCGAAATGATAACGATTCATCGGTCGCAGAATTGGAACGAGAGGAACAGGTCTGCAGAAGAATATCCGTTAGTTTTTTATAATTTTCTCTAATCCTCTCAAAAACCCATAATCTCTCGGTGATAACGATGCCGGGTACCTGCCGCCGACATCCACTAAATTCGGTTTAAAAAGAGCGAGCGAAATGAGAAATCCTTCAACATTTCTCCAATTTCCATAGGAGATGTTCATTTCTACAATTCTACCTCATATTTTTTTAAACATTTTCTAAATAATTCTATATATTTTGTCTACTGCCTCATGTCGAGCTTATTCTGGAATCTTCTGTCCCTTCCGTCCAGCCATTCCTTGTGTCATATCTGCTGTCGTATGCCGGATTTTCGTTTTAAAATATAAATTTTTAATAATTCTAATAATTATTAAACTAACTCTTTTTTACATATCAATGCAGCTAGCTATTTTGGTGCTACTTAGTTGTTTTGTATTTAATAAGAAAAAAAACGAATAATAAAGAATTGTGACGGAGAATTCGAGTTTTTTTCTCTTTTTTCCGGGATATTTCCGAAATTTTTTTTCAGAACTTGAACAACAGTATCTCAAAGGCGCATACGCAAAGCTTCCTCTCGGGTTTCGAGCGGAAATCCTTTTTTTAGCGTTTTTGAGATCTTTATTTCCATTTTTAACTATTTTTCTAGCTTTCAAGAAGGGAAAGTGGGAGTTCTTAAGTTTAAATCGTTGAAAATCAGAATATTCCGGTATTCTGATCATTTTCAGAACATTTCCGGGGGATACNACGAA</canonical>
            <polymorphic>ACCGAATTCGCCAAGCAACATTAATAATCAGATTATTGTATTTCTTTAATTGTTCTCACGATCCAGATGCTGGTACATTTATAGCATTCGACAGTTTTTGACTGAACTCTTTCTATTGCGTATCGCAAATTGTACTTTTAATAAACTTCTTTTTTCTTTATCATTTCAAGGTCAAGAAATCAATTTTTCATGAATTTTTTTAATCGAAATGATAACGATTCATCGGTCGCAGAATTGGAACGAGAGGAACAGGTCTGCAGAAGAATATCCGTTAGTTTTTTATAATTTTCTCTAATCCTCTCAAAAACCCATAATCTCTCGGTGATAACGATGCCGGGTACCTGCCGCCGACATCCACTAAATTCGGTTTAAAAAGAGCGAGCGAAATGAGAAATCCTTCAACATTTCTCCAATTTCCATAGGAGATGTTCATTTCTACAATTCTACCTCATATTTTTTTAAACATTTTCTAAATAATTCTATATATTTTGTCTACTGCYTCATGTCGAGCTTATTCTGGAATCTTCTGTCCCTTCCGTCCAGCCATTCCTTGTGTCATATCTGCTGTCGTATGCCGGATTTTCGTTTTAAAATATAAATTTTTAATAATTCTAATAATTATTAAACTAACTCTTTTTTACATATCAATGCAGCTAGCTATTTTGGTGCTACTTAGTTGTTTTGTATTTAATAAGAAAAAAAACGAATAATAAAGAATTGTGACGGAGAATTCGAGTTTTTTTCTCTTTTTTCCGGGATATTTCCGAAATTTTTTTTCAGAACTTGAACAACAGTATCTCAAAGGCGCATACGCAAAGCTTCCTCTCGGGTTTCGAGCGGAAATCCTTTTTTTAGCGTTTTTGAGATCTTTATTTCCATTTTTAACTATTTTTCTAGCTTTCAAGAAGGGAAAGTGGGAGTTCTTAAGTTTAAATCGTTGAAAATCAGAATATTCCGGTATTCTGATCATTTTCAGAACATTTCCGGGGGATACNACGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATGTTCATTTCTACAATTCTACC</pcr_primer_p1>
		<pcr_primer_p2>TAGCTAGCTGCATTGATATGTAA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>AGATGTTCATTTCTACAATTCTACCTCATATTTTTTTAAACATTTTCTAAATAATTCTATATATTTTGTCTACTGCCTCATGTCGAGCTTATTCTGGAATCTTCTGTCCCTTCCGTCCAGCCATTCCTTGTGTCATATCTGCTGTCGTATGCCGGATTTTCGTTTTAAAATATAAATTTTTAATAATTCTAATAATTATTAAACTAACTCTTTTTTACATATCAATGCAGCTAGCTA</canonical_amplicon>
		<polymorphic_amplicon>AGATGTTCATTTCTACAATTCTACCTCATATTTTTTTAAACATTTTCTAAATAATTCTATATATTTTGTCTACTGCYTCATGTCGAGCTTATTCTGGAATCTTCTGTCCCTTCCGTCCAGCCATTCCTTGTGTCATATCTGCTGTCGTATGCCGGATTTTCGTTTTAAAATATAAATTTTTAATAATTCTAATAATTATTAAACTAACTCTTTTTTACATATCAATGCAGCTAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26509</snp_id>
        <super_contig>c002400810.Contig3</super_contig>
        <contig_pos>29210</contig_pos>
        <strand>+</strand>
        <context>ATGCAAATTA[A/G]GCTCYTCTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTTCTTTATCCAAAAAAATTCCTGCGTTCCTCTTTTCAATGCAAATTA</left_flank>
        <right_flank>GCTCTTCTAGATAGTTATTATAGCTTTATTTGTTGTTTGTTAATTTGCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGACCACAGTTTCTGCCGTTTCCGAACTTGCTCAACGTACTTCGTGAGGTGTACACAAGCGGTGGCGATTGGAGTCGCGCGCTACACAACAACATCAGTAGACGGCACTTGGTGGATACGAATGAAGACGAGCACAAAAAAATGCAGATGTTGAGACGACGAGTGAAAGAGGAGGAGCGTCGCGAGCTGACAGAGGCAATTATTAGTGCCACTCAGGACTAGAGAAGAAGCGGAAGACGTTTATAATTGAAACCTATTTATGGAGAGAGAGAAGGAGAGAGGGAAAAGAAGGCGTTATAAAAAAAACCGTTTAACTTTGGTTACTCTCTCTCTCTCTCTCTTTCTTTTCTTTTCTCTTATTTCGTTCTGTTTTTTTTCTAGATGACGTGGAGCACGCCCAGCTTTTCTCTTGTCTGACCAAAACAAGACGAACGGCTCTTTCTTTTTCTCTTTCTTTATCCAAAAAAATTCCTGCGTTCCTCTTTTCAATGCAAATTAGGCTCTTCTAGATAGTTATTATAGCTTTATTTGTTGTTTGTTAATTTGCTAGTTGTTATAATTTATAAAAAATCTGTTACTTTTTTGTTCCTCATGAAAACGATATCCTGTATTAATTGAATATTCATATATCAGTTGACATTTCTATATCTATATTTTTTTTTGGAAAAGGGCAAAACTATCAGGAAGATATATTTTAATTCCCCGTGCTTCTTCCCACTCATACTTCTATTCTGGAGCAGAAGGCCCCTGGTGTTGAATGGCCGCTGGCCATTAGACTGACGTCATCTGGTCATGTTGTTTGAAAAAAAGGAGAAGGGGACGGAAGAAGAAGAAGGAATGCACCACGCGCCGACGACGGCTTCTTCTCCAGAAGGAGCTCTCGATCCATGTTGCCGTTTTTTTCCTTCATTTATCCGCGCCGATATCTTCCCGAATAGATCCTTGAAAGCGCCACGAGATTTTTGAATAATTTATGGAAAGGGACATCTAGGGAGAGAG</canonical>
            <polymorphic>GGGACCACAGTTTCTGCCGTTTCCGAACTTGCTCAACGTACTTCGTGAGGTGTACACAAGCGGTGGCGATTGGAGTCGCGCGCTACACAACAACATCAGTAGACGGCACTTGGTGGATACGAATGAAGACGAGCACAAAAAAATGCAGATGTTGAGACGACGAGTGAAAGAGGAGGAGCGTCGCGAGCTGACAGAGGCAATTATTAGTGCCACTCAGGACTAGAGAAGAAGCGGAAGACGTTTATAATTGAAACCTATTTATGGAGAGAGAGAAGGAGAGAGGGAAAAGAAGGCGTTATAAAAAAAACCGTTTAACTTTGGTTACTCTCTCTCTCTCTCTCTTTCTTTTCTTTTCTCTTATTTCGTTCTGTTTTTTTTCTAGATGACGTGGAGCACGCCCAGCTTTTCTCTTGTCTGACCAAAACAAGACGAACGGCTCTTTCTTTTTCTCTTTCTTTATCCAAAAAAATTCCTGCGTTCCTCTTTTCAATGCAAATTARGCTCTTCTAGATAGTTATTATAGCTTTATTTGTTGTTTGTTAATTTGCTAGTTGTTATAATTTATAAAAAATCTGTTACTTTTTTGTTCCTCATGAAAACGATATCCTGTATTAATTGAATATTCATATATCAGTTGACATTTCTATATCTATATTTTTTTTTGGAAAAGGGCAAAACTATCAGGAAGATATATTTTAATTCCCCGTGCTTCTTCCCACTCATACTTCTATTCTGGAGCAGAAGGCCCCTGGTGTTGAATGGCCGCTGGCCATTAGACTGACGTCATCTGGTCATGTTGTTTGAAAAAAAGGAGAAGGGGACGGAAGAAGAAGAAGGAATGCACCACGCGCCGACGACGGCTTCTTCTCCAGAAGGAGCTCTCGATCCATGTTGCCGTTTTTTTCCTTCATTTATCCGCGCCGATATCTTCCCGAATAGATCCTTGAAAGCGCCACGAGATTTTTGAATAATTTATGGAAAGGGACATCTAGGGAGAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>222 215 187 122 91 65 34 22 18 17 7</canonical_bands>
                <polymorphic_bands>222 215 187 122 91 87 34 18 17 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTCTTTCTTTTTCTCTTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>CCTGATAGTTTTGCCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTCTTTCTTTTTCTCTTTCTTTATCCAAAAAAATTCCTGCGTTCCTCTTTTCAATGCAAATTAGGCTCTTCTAGATAGTTATTATAGCTTTATTTGTTGTTTGTTAATTTGCTAGTTGTTATAATTTATAAAAAATCTGTTACTTTTTTGTTCCTCATGAAAACGATATCCTGTATTAATTGAATATTCATATATCAGTTGACATTTCTATATCTATATTTTTTTTTGGAAAAGGGCAAAACTATCAGG</canonical_amplicon>
		<polymorphic_amplicon>GCTCTTTCTTTTTCTCTTTCTTTATCCAAAAAAATTCCTGCGTTCCTCTTTTCAATGCAAATTARGCTCTTCTAGATAGTTATTATAGCTTTATTTGTTGTTTGTTAATTTGCTAGTTGTTATAATTTATAAAAAATCTGTTACTTTTTTGTTCCTCATGAAAACGATATCCTGTATTAATTGAATATTCATATATCAGTTGACATTTCTATATCTATATTTTTTTTTGGAAAAGGGCAAAACTATCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26510</snp_id>
        <super_contig>c002400810.Contig3</super_contig>
        <contig_pos>29215</contig_pos>
        <strand>+</strand>
        <context>AATTARGCTC[C/T]TCTAGATAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTATCCAAAAAAATTCCTGCGTTCCTCTTTTCAATGCAAATTAGGCTC</left_flank>
        <right_flank>TCTAGATAGTTATTATAGCTTTATTTGTTGTTTGTTAATTTGCTAGTTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACAGTTTCTGCCGTTTCCGAACTTGCTCAACGTACTTCGTGAGGTGTACACAAGCGGTGGCGATTGGAGTCGCGCGCTACACAACAACATCAGTAGACGGCACTTGGTGGATACGAATGAAGACGAGCACAAAAAAATGCAGATGTTGAGACGACGAGTGAAAGAGGAGGAGCGTCGCGAGCTGACAGAGGCAATTATTAGTGCCACTCAGGACTAGAGAAGAAGCGGAAGACGTTTATAATTGAAACCTATTTATGGAGAGAGAGAAGGAGAGAGGGAAAAGAAGGCGTTATAAAAAAAACCGTTTAACTTTGGTTACTCTCTCTCTCTCTCTCTTTCTTTTCTTTTCTCTTATTTCGTTCTGTTTTTTTTCTAGATGACGTGGAGCACGCCCAGCTTTTCTCTTGTCTGACCAAAACAAGACGAACGGCTCTTTCTTTTTCTCTTTCTTTATCCAAAAAAATTCCTGCGTTCCTCTTTTCAATGCAAATTAGGCTCTTCTAGATAGTTATTATAGCTTTATTTGTTGTTTGTTAATTTGCTAGTTGTTATAATTTATAAAAAATCTGTTACTTTTTTGTTCCTCATGAAAACGATATCCTGTATTAATTGAATATTCATATATCAGTTGACATTTCTATATCTATATTTTTTTTTGGAAAAGGGCAAAACTATCAGGAAGATATATTTTAATTCCCCGTGCTTCTTCCCACTCATACTTCTATTCTGGAGCAGAAGGCCCCTGGTGTTGAATGGCCGCTGGCCATTAGACTGACGTCATCTGGTCATGTTGTTTGAAAAAAAGGAGAAGGGGACGGAAGAAGAAGAAGGAATGCACCACGCGCCGACGACGGCTTCTTCTCCAGAAGGAGCTCTCGATCCATGTTGCCGTTTTTTTCCTTCATTTATCCGCGCCGATATCTTCCCGAATAGATCCTTGAAAGCGCCACGAGATTTTTGAATAATTTATGGAAAGGGACATCTAGGGAGAGAGAGAGT</canonical>
            <polymorphic>CACAGTTTCTGCCGTTTCCGAACTTGCTCAACGTACTTCGTGAGGTGTACACAAGCGGTGGCGATTGGAGTCGCGCGCTACACAACAACATCAGTAGACGGCACTTGGTGGATACGAATGAAGACGAGCACAAAAAAATGCAGATGTTGAGACGACGAGTGAAAGAGGAGGAGCGTCGCGAGCTGACAGAGGCAATTATTAGTGCCACTCAGGACTAGAGAAGAAGCGGAAGACGTTTATAATTGAAACCTATTTATGGAGAGAGAGAAGGAGAGAGGGAAAAGAAGGCGTTATAAAAAAAACCGTTTAACTTTGGTTACTCTCTCTCTCTCTCTCTTTCTTTTCTTTTCTCTTATTTCGTTCTGTTTTTTTTCTAGATGACGTGGAGCACGCCCAGCTTTTCTCTTGTCTGACCAAAACAAGACGAACGGCTCTTTCTTTTTCTCTTTCTTTATCCAAAAAAATTCCTGCGTTCCTCTTTTCAATGCAAATTAGGCTCYTCTAGATAGTTATTATAGCTTTATTTGTTGTTTGTTAATTTGCTAGTTGTTATAATTTATAAAAAATCTGTTACTTTTTTGTTCCTCATGAAAACGATATCCTGTATTAATTGAATATTCATATATCAGTTGACATTTCTATATCTATATTTTTTTTTGGAAAAGGGCAAAACTATCAGGAAGATATATTTTAATTCCCCGTGCTTCTTCCCACTCATACTTCTATTCTGGAGCAGAAGGCCCCTGGTGTTGAATGGCCGCTGGCCATTAGACTGACGTCATCTGGTCATGTTGTTTGAAAAAAAGGAGAAGGGGACGGAAGAAGAAGAAGGAATGCACCACGCGCCGACGACGGCTTCTTCTCCAGAAGGAGCTCTCGATCCATGTTGCCGTTTTTTTCCTTCATTTATCCGCGCCGATATCTTCCCGAATAGATCCTTGAAAGCGCCACGAGATTTTTGAATAATTTATGGAAAGGGACATCTAGGGAGAGAGAGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCTTTCTTTTTCTCTTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>CCTGATAGTTTTGCCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTCTTTCTTTTTCTCTTTCTTTATCCAAAAAAATTCCTGCGTTCCTCTTTTCAATGCAAATTAGGCTCTTCTAGATAGTTATTATAGCTTTATTTGTTGTTTGTTAATTTGCTAGTTGTTATAATTTATAAAAAATCTGTTACTTTTTTGTTCCTCATGAAAACGATATCCTGTATTAATTGAATATTCATATATCAGTTGACATTTCTATATCTATATTTTTTTTTGGAAAAGGGCAAAACTATCAGG</canonical_amplicon>
		<polymorphic_amplicon>GCTCTTTCTTTTTCTCTTTCTTTATCCAAAAAAATTCCTGCGTTCCTCTTTTCAATGCAAATTAGGCTCYTCTAGATAGTTATTATAGCTTTATTTGTTGTTTGTTAATTTGCTAGTTGTTATAATTTATAAAAAATCTGTTACTTTTTTGTTCCTCATGAAAACGATATCCTGTATTAATTGAATATTCATATATCAGTTGACATTTCTATATCTATATTTTTTTTTGGAAAAGGGCAAAACTATCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26511</snp_id>
        <super_contig>c002400810.Contig3</super_contig>
        <contig_pos>29231</contig_pos>
        <strand>+</strand>
        <context>ATAGTTATTA[A/T]AGCTTTATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCTGCGTTCCTCTTTTCAATGCAAATTAGGCTCTTCTAGATAGTTATTA</left_flank>
        <right_flank>AGCTTTATTTGTTGTTTGTTAATTTGCTAGTTGTTATAATTTATAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCGAACTTGCTCAACGTACTTCGTGAGGTGTACACAAGCGGTGGCGATTGGAGTCGCGCGCTACACAACAACATCAGTAGACGGCACTTGGTGGATACGAATGAAGACGAGCACAAAAAAATGCAGATGTTGAGACGACGAGTGAAAGAGGAGGAGCGTCGCGAGCTGACAGAGGCAATTATTAGTGCCACTCAGGACTAGAGAAGAAGCGGAAGACGTTTATAATTGAAACCTATTTATGGAGAGAGAGAAGGAGAGAGGGAAAAGAAGGCGTTATAAAAAAAACCGTTTAACTTTGGTTACTCTCTCTCTCTCTCTCTTTCTTTTCTTTTCTCTTATTTCGTTCTGTTTTTTTTCTAGATGACGTGGAGCACGCCCAGCTTTTCTCTTGTCTGACCAAAACAAGACGAACGGCTCTTTCTTTTTCTCTTTCTTTATCCAAAAAAATTCCTGCGTTCCTCTTTTCAATGCAAATTAGGCTCTTCTAGATAGTTATTATAGCTTTATTTGTTGTTTGTTAATTTGCTAGTTGTTATAATTTATAAAAAATCTGTTACTTTTTTGTTCCTCATGAAAACGATATCCTGTATTAATTGAATATTCATATATCAGTTGACATTTCTATATCTATATTTTTTTTTGGAAAAGGGCAAAACTATCAGGAAGATATATTTTAATTCCCCGTGCTTCTTCCCACTCATACTTCTATTCTGGAGCAGAAGGCCCCTGGTGTTGAATGGCCGCTGGCCATTAGACTGACGTCATCTGGTCATGTTGTTTGAAAAAAAGGAGAAGGGGACGGAAGAAGAAGAAGGAATGCACCACGCGCCGACGACGGCTTCTTCTCCAGAAGGAGCTCTCGATCCATGTTGCCGTTTTTTTCCTTCATTTATCCGCGCCGATATCTTCCCGAATAGATCCTTGAAAGCGCCACGAGATTTTTGAATAATTTATGGAAAGGGACATCTAGGGAGAGAGAGAGTGAAGGGGCGGAGAGCA</canonical>
            <polymorphic>TCCGAACTTGCTCAACGTACTTCGTGAGGTGTACACAAGCGGTGGCGATTGGAGTCGCGCGCTACACAACAACATCAGTAGACGGCACTTGGTGGATACGAATGAAGACGAGCACAAAAAAATGCAGATGTTGAGACGACGAGTGAAAGAGGAGGAGCGTCGCGAGCTGACAGAGGCAATTATTAGTGCCACTCAGGACTAGAGAAGAAGCGGAAGACGTTTATAATTGAAACCTATTTATGGAGAGAGAGAAGGAGAGAGGGAAAAGAAGGCGTTATAAAAAAAACCGTTTAACTTTGGTTACTCTCTCTCTCTCTCTCTTTCTTTTCTTTTCTCTTATTTCGTTCTGTTTTTTTTCTAGATGACGTGGAGCACGCCCAGCTTTTCTCTTGTCTGACCAAAACAAGACGAACGGCTCTTTCTTTTTCTCTTTCTTTATCCAAAAAAATTCCTGCGTTCCTCTTTTCAATGCAAATTAGGCTCTTCTAGATAGTTATTAWAGCTTTATTTGTTGTTTGTTAATTTGCTAGTTGTTATAATTTATAAAAAATCTGTTACTTTTTTGTTCCTCATGAAAACGATATCCTGTATTAATTGAATATTCATATATCAGTTGACATTTCTATATCTATATTTTTTTTTGGAAAAGGGCAAAACTATCAGGAAGATATATTTTAATTCCCCGTGCTTCTTCCCACTCATACTTCTATTCTGGAGCAGAAGGCCCCTGGTGTTGAATGGCCGCTGGCCATTAGACTGACGTCATCTGGTCATGTTGTTTGAAAAAAAGGAGAAGGGGACGGAAGAAGAAGAAGGAATGCACCACGCGCCGACGACGGCTTCTTCTCCAGAAGGAGCTCTCGATCCATGTTGCCGTTTTTTTCCTTCATTTATCCGCGCCGATATCTTCCCGAATAGATCCTTGAAAGCGCCACGAGATTTTTGAATAATTTATGGAAAGGGACATCTAGGGAGAGAGAGAGTGAAGGGGCGGAGAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCTTTCTTTTTCTCTTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>CCTGATAGTTTTGCCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTCTTTCTTTTTCTCTTTCTTTATCCAAAAAAATTCCTGCGTTCCTCTTTTCAATGCAAATTAGGCTCTTCTAGATAGTTATTATAGCTTTATTTGTTGTTTGTTAATTTGCTAGTTGTTATAATTTATAAAAAATCTGTTACTTTTTTGTTCCTCATGAAAACGATATCCTGTATTAATTGAATATTCATATATCAGTTGACATTTCTATATCTATATTTTTTTTTGGAAAAGGGCAAAACTATCAGG</canonical_amplicon>
		<polymorphic_amplicon>GCTCTTTCTTTTTCTCTTTCTTTATCCAAAAAAATTCCTGCGTTCCTCTTTTCAATGCAAATTAGGCTCTTCTAGATAGTTATTAWAGCTTTATTTGTTGTTTGTTAATTTGCTAGTTGTTATAATTTATAAAAAATCTGTTACTTTTTTGTTCCTCATGAAAACGATATCCTGTATTAATTGAATATTCATATATCAGTTGACATTTCTATATCTATATTTTTTTTTGGAAAAGGGCAAAACTATCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26512</snp_id>
        <super_contig>c002400810.Contig3</super_contig>
        <contig_pos>37173</contig_pos>
        <strand>+</strand>
        <context>aattcggggg[G/T]ccgtctatta</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTGATATCTTGTATAGGAGTTGAGATAATTGAGCTCAAAATTCGGGGG</left_flank>
        <right_flank>CCGTCTATTACAGGTTTTATAGTATATTGTTTATTTAAACGAGAGAAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTACACAAATCACACTTTTTTGCTCATTTTTTCCAACCAAATTTCAGTCTAAAATAGTCATTTTTAACCCCAAAAATGCCAAACTTGACATGGCTAGCGATACATATACACACACGATCAGATGCGATCTCCTCATTTTCCTCCTCTCTTTTGTGTTCTTATGTTATTTCCACCACCACCTCTCTCGTGTGTATGTCGAAAATTTCAAATTTTTTTTCGACTACTACCTTTCGCCGGCATTTTCACACTCGCTTTTTTAGCAGATTTTGATCCGTTTCTGTATATAGTATATATCGCAAATTTTACGATTCGTAAAACCTGCAATAGAAGGGCCTGCTAACTGTTAACTTTAAGCCAATTTATCTCAATTTCTGTCAAAGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAAGTGTTTTGCCAGTTGACAACTTTTTGATATCTTGTATAGGAGTTGAGATAATTGAGCTCAAAATTCGGGGGCCCGTCTATTACAGGTTTTATAGTATATTGTTTATTTAAACGAGAGAAGTTGCTCCAATGTTTCAAAGAGAAAACAAATGACCTCCTCTTTGTGTCTCCTGACTCCCTGGCGAGTGCCCCCACGTGTTTTCTTCCGAGTCATCACATACAGTTCTTCTTCCCCATGGATCAAAAAAAACAATCGGAAAAAGAAAATATTGATCTGAAAACTAAAATTTGCAATTTTAGAACGAAAAACCGATCGAAGTAGTCGTCGAGAAGAAGCAAAACGAGCCAGAGAACAAATCGGAATCAGTGGAAACTGATCACGCGGCCGCCGGAGATTACTCTGAAGCTGTTCAACAAGCTGAAGACGTGGAGGTTCAGGAAGAGGAGCAGAAGGTTTGTGATGTGCTTTTGTGTCAAAAAAAATTTGAAGTTTTTATGTTGCCCAGGGAGAATTTTCCACTTTTTGCTGCTTCTTTTTTTCGGCACAGGAAAAAATAACAGAAAAAAAAACGA</canonical>
            <polymorphic>ACTACACAAATCACACTTTTTTGCTCATTTTTTCCAACCAAATTTCAGTCTAAAATAGTCATTTTTAACCCCAAAAATGCCAAACTTGACATGGCTAGCGATACATATACACACACGATCAGATGCGATCTCCTCATTTTCCTCCTCTCTTTTGTGTTCTTATGTTATTTCCACCACCACCTCTCTCGTGTGTATGTCGAAAATTTCAAATTTTTTTTCGACTACTACCTTTCGCCGGCATTTTCACACTCGCTTTTTTAGCAGATTTTGATCCGTTTCTGTATATAGTATATATCGCAAATTTTACGATTCGTAAAACCTGCAATAGAAGGGCCTGCTAACTGTTAACTTTAAGCCAATTTATCTCAATTTCTGTCAAAGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAAGTGTTTTGCCAGTTGACAACTTTTTGATATCTTGTATAGGAGTTGAGATAATTGAGCTCAAAATTCGGGGGKCCGTCTATTACAGGTTTTATAGTATATTGTTTATTTAAACGAGAGAAGTTGCTCCAATGTTTCAAAGAGAAAACAAATGACCTCCTCTTTGTGTCTCCTGACTCCCTGGCGAGTGCCCCCACGTGTTTTCTTCCGAGTCATCACATACAGTTCTTCTTCCCCATGGATCAAAAAAAACAATCGGAAAAAGAAAATATTGATCTGAAAACTAAAATTTGCAATTTTAGAACGAAAAACCGATCGAAGTAGTCGTCGAGAAGAAGCAAAACGAGCCAGAGAACAAATCGGAATCAGTGGAAACTGATCACGCGGCCGCCGGAGATTACTCTGAAGCTGTTCAACAAGCTGAAGACGTGGAGGTTCAGGAAGAGGAGCAGAAGGTTTGTGATGTGCTTTTGTGTCAAAAAAAATTTGAAGTTTTTATGTTGCCCAGGGAGAATTTTCCACTTTTTGCTGCTTCTTTTTTTCGGCACAGGAAAAAATAACAGAAAAAAAAACGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGGCCC</site>
                <isoschizomers>
                    <enzyme>ApaI</enzyme>
                    <enzyme>Bsp120I</enzyme>
                    <enzyme>PspOMI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>503 331 166</canonical_bands>
                <polymorphic_bands>502 331 167</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>499 486 15</canonical_bands>
                <polymorphic_bands>514 486</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>501 383 116</canonical_bands>
                <polymorphic_bands>617 383</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>486 383 116 15</canonical_bands>
                <polymorphic_bands>486 383 131</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>501 499</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>333 313 188 166</canonical_bands>
                <polymorphic_bands>479 333 188</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>273 239 155 129 94 40 22 21 15 12</canonical_bands>
                <polymorphic_bands>288 239 155 129 94 40 22 21 12</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>503 331 166</canonical_bands>
                <polymorphic_bands>669 331</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATTTTGATCCGTTTCTGTAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTTTTCTCTTTGAAACATTG</pcr_primer_p2>
		<pcr_amplicon_size>315</pcr_amplicon_size>
		<canonical_amplicon>AGATTTTGATCCGTTTCTGTATATAGTATATATCGCAAATTTTACGATTCGTAAAACCTGCAATAGAAGGGCCTGCTAACTGTTAACTTTAAGCCAATTTATCTCAATTTCTGTCAAAGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAAGTGTTTTGCCAGTTGACAACTTTTTGATATCTTGTATAGGAGTTGAGATAATTGAGCTCAAAATTCGGGGGCCCGTCTATTACAGGTTTTATAGTATATTGTTTATTTAAACGAGAGAAGTTGCTCCAATGTTTCAAAGAGAAAACAAA</canonical_amplicon>
		<polymorphic_amplicon>AGATTTTGATCCGTTTCTGTATATAGTATATATCGCAAATTTTACGATTCGTAAAACCTGCAATAGAAGGGCCTGCTAACTGTTAACTTTAAGCCAATTTATCTCAATTTCTGTCAAAGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAAGTGTTTTGCCAGTTGACAACTTTTTGATATCTTGTATAGGAGTTGAGATAATTGAGCTCAAAATTCGGGGGKCCGTCTATTACAGGTTTTATAGTATATTGTTTATTTAAACGAGAGAAGTTGCTCCAATGTTTCAAAGAGAAAACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26513</snp_id>
        <super_contig>c002400810.Contig3</super_contig>
        <contig_pos>37194</contig_pos>
        <strand></strand>
        <context>caggttttat[A/G]gtATATTGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAGATAATTGAGCTCAAAATTCGGGGGCCCGTCTATTACAGGTTTTAT</left_flank>
        <right_flank>GTATATTGTTTATTTAAACGAGAGAAGTTGCTCCAATGTTTCAAAGAGAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTCATTTTTTCCAACCAAATTTCAGTCTAAAATAGTCATTTTTAACCCCAAAAATGCCAAACTTGACATGGCTAGCGATACATATACACACACGATCAGATGCGATCTCCTCATTTTCCTCCTCTCTTTTGTGTTCTTATGTTATTTCCACCACCACCTCTCTCGTGTGTATGTCGAAAATTTCAAATTTTTTTTCGACTACTACCTTTCGCCGGCATTTTCACACTCGCTTTTTTAGCAGATTTTGATCCGTTTCTGTATATAGTATATATCGCAAATTTTACGATTCGTAAAACCTGCAATAGAAGGGCCTGCTAACTGTTAACTTTAAGCCAATTTATCTCAATTTCTGTCAAAGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAAGTGTTTTGCCAGTTGACAACTTTTTGATATCTTGTATAGGAGTTGAGATAATTGAGCTCAAAATTCGGGGGCCCGTCTATTACAGGTTTTATAGTATATTGTTTATTTAAACGAGAGAAGTTGCTCCAATGTTTCAAAGAGAAAACAAATGACCTCCTCTTTGTGTCTCCTGACTCCCTGGCGAGTGCCCCCACGTGTTTTCTTCCGAGTCATCACATACAGTTCTTCTTCCCCATGGATCAAAAAAAACAATCGGAAAAAGAAAATATTGATCTGAAAACTAAAATTTGCAATTTTAGAACGAAAAACCGATCGAAGTAGTCGTCGAGAAGAAGCAAAACGAGCCAGAGAACAAATCGGAATCAGTGGAAACTGATCACGCGGCCGCCGGAGATTACTCTGAAGCTGTTCAACAAGCTGAAGACGTGGAGGTTCAGGAAGAGGAGCAGAAGGTTTGTGATGTGCTTTTGTGTCAAAAAAAATTTGAAGTTTTTATGTTGCCCAGGGAGAATTTTCCACTTTTTGCTGCTTCTTTTTTTCGGCACAGGAAAAAATAACAGAAAAAAAAACGAAAAATTTATATGGCCGATATT</canonical>
            <polymorphic>TGCTCATTTTTTCCAACCAAATTTCAGTCTAAAATAGTCATTTTTAACCCCAAAAATGCCAAACTTGACATGGCTAGCGATACATATACACACACGATCAGATGCGATCTCCTCATTTTCCTCCTCTCTTTTGTGTTCTTATGTTATTTCCACCACCACCTCTCTCGTGTGTATGTCGAAAATTTCAAATTTTTTTTCGACTACTACCTTTCGCCGGCATTTTCACACTCGCTTTTTTAGCAGATTTTGATCCGTTTCTGTATATAGTATATATCGCAAATTTTACGATTCGTAAAACCTGCAATAGAAGGGCCTGCTAACTGTTAACTTTAAGCCAATTTATCTCAATTTCTGTCAAAGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAAGTGTTTTGCCAGTTGACAACTTTTTGATATCTTGTATAGGAGTTGAGATAATTGAGCTCAAAATTCGGGGGCCCGTCTATTACAGGTTTTATRGTATATTGTTTATTTAAACGAGAGAAGTTGCTCCAATGTTTCAAAGAGAAAACAAATGACCTCCTCTTTGTGTCTCCTGACTCCCTGGCGAGTGCCCCCACGTGTTTTCTTCCGAGTCATCACATACAGTTCTTCTTCCCCATGGATCAAAAAAAACAATCGGAAAAAGAAAATATTGATCTGAAAACTAAAATTTGCAATTTTAGAACGAAAAACCGATCGAAGTAGTCGTCGAGAAGAAGCAAAACGAGCCAGAGAACAAATCGGAATCAGTGGAAACTGATCACGCGGCCGCCGGAGATTACTCTGAAGCTGTTCAACAAGCTGAAGACGTGGAGGTTCAGGAAGAGGAGCAGAAGGTTTGTGATGTGCTTTTGTGTCAAAAAAAATTTGAAGTTTTTATGTTGCCCAGGGAGAATTTTCCACTTTTTGCTGCTTCTTTTTTTCGGCACAGGAAAAAATAACAGAAAAAAAAACGAAAAATTTATATGGCCGATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATTTTGATCCGTTTCTGTAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTTTTCTCTTTGAAACATTG</pcr_primer_p2>
		<pcr_amplicon_size>315</pcr_amplicon_size>
		<canonical_amplicon>AGATTTTGATCCGTTTCTGTATATAGTATATATCGCAAATTTTACGATTCGTAAAACCTGCAATAGAAGGGCCTGCTAACTGTTAACTTTAAGCCAATTTATCTCAATTTCTGTCAAAGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAAGTGTTTTGCCAGTTGACAACTTTTTGATATCTTGTATAGGAGTTGAGATAATTGAGCTCAAAATTCGGGGGCCCGTCTATTACAGGTTTTATAGTATATTGTTTATTTAAACGAGAGAAGTTGCTCCAATGTTTCAAAGAGAAAACAAA</canonical_amplicon>
		<polymorphic_amplicon>AGATTTTGATCCGTTTCTGTATATAGTATATATCGCAAATTTTACGATTCGTAAAACCTGCAATAGAAGGGCCTGCTAACTGTTAACTTTAAGCCAATTTATCTCAATTTCTGTCAAAGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAAGTGTTTTGCCAGTTGACAACTTTTTGATATCTTGTATAGGAGTTGAGATAATTGAGCTCAAAATTCGGGGGCCCGTCTATTACAGGTTTTATRGTATATTGTTTATTTAAACGAGAGAAGTTGCTCCAATGTTTCAAAGAGAAAACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26514</snp_id>
        <super_contig>c002400810.Contig3</super_contig>
        <contig_pos>91466</contig_pos>
        <strand>+</strand>
        <context>CACCGACCTC[A/C]TCAACRCCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAAAAGATTTAAAGTCGTAAAACAGGACTTGTGCCAATCCACCGACCTC</left_flank>
        <right_flank>TCAACACCTTCTACATCTACACCAACAACTCCAGAATCAACTACAACACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGATCCGTGGTCCCAGTTCATATCAATCAAAGATGGTGGCTTTCTTATATCATTTACAATAATTGGAATGTAATCATTTTCTTATCTCGAATTTTTCGTATCAATATTTTCAGGGTAAATGGGGACAACGGGAAGATGTTTCAGTTCGACCATTCAGTAAAGGAATGCCATTTGTGTTGTCTGTTGTGTAAGTGGGAGGAGATGAAAAAGGAGAAATCTGAAACTTGTTTCAGAAAGACAGCCAATTCCCATATTGTATATGGAAATGGGATGGAGTTGATCAATTTCTGGAATCGAGGATCGCAAGCGGAAAATCGGATTGGAAGTATGATTGCGTATGAGGATTGGACTATTGATTCAGTTACAATGTGAGTTGTTAAAAATATTTTTGGAGGTTTCAACGATTATAGTTTTTAAATTTCAAAGATTCAACGACTAGAAATTCAAAAAAAAAGATTTAAAGTCGTAAAACAGGACTTGTGCCAATCCACCGACCTCATCAACACCTTCTACATCTACACCAACAACTCCAGAATCAACTACAACACCACTCGATCTATCATCAGCTCCTTTGCCAATCCTAGACTGCAACACTTTGGTAAGTTTCATAGCTAACTTACTCCCAAACTCATCTAACATTCAGGATCTGAAAAAATATGGAGATATTCGTTATCGTCCACTCAACTTTTCCCGTCTAATGGAGACGGGAGACAATCTCACTCTAACTGGATACATGTGGTCGAACGCTACAGAGTTGGTCCCCATTAAGACTTGAATCTAAAATTTTTGTGTTTAGATCCAACGTCAATTTGTATGTCGGCTTCAATCCGGTTTTCGAGAGAACGCAAGTTCCAGTTCATATTAATCAGCGATGGAATCAACAATGGAGCATTTACAACAATTATGTGCCTGGTGTAGGTTTTTTTTCGGAGCAAAAAAATAATTTGGTGGTTGCCGATTCTTTTGTTTAGATCGTACAGTGTATTTCATAAGTTACCA</canonical>
            <polymorphic>AAGATCCGTGGTCCCAGTTCATATCAATCAAAGATGGTGGCTTTCTTATATCATTTACAATAATTGGAATGTAATCATTTTCTTATCTCGAATTTTTCGTATCAATATTTTCAGGGTAAATGGGGACAACGGGAAGATGTTTCAGTTCGACCATTCAGTAAAGGAATGCCATTTGTGTTGTCTGTTGTGTAAGTGGGAGGAGATGAAAAAGGAGAAATCTGAAACTTGTTTCAGAAAGACAGCCAATTCCCATATTGTATATGGAAATGGGATGGAGTTGATCAATTTCTGGAATCGAGGATCGCAAGCGGAAAATCGGATTGGAAGTATGATTGCGTATGAGGATTGGACTATTGATTCAGTTACAATGTGAGTTGTTAAAAATATTTTTGGAGGTTTCAACGATTATAGTTTTTAAATTTCAAAGATTCAACGACTAGAAATTCAAAAAAAAAGATTTAAAGTCGTAAAACAGGACTTGTGCCAATCCACCGACCTCMTCAACACCTTCTACATCTACACCAACAACTCCAGAATCAACTACAACACCACTCGATCTATCATCAGCTCCTTTGCCAATCCTAGACTGCAACACTTTGGTAAGTTTCATAGCTAACTTACTCCCAAACTCATCTAACATTCAGGATCTGAAAAAATATGGAGATATTCGTTATCGTCCACTCAACTTTTCCCGTCTAATGGAGACGGGAGACAATCTCACTCTAACTGGATACATGTGGTCGAACGCTACAGAGTTGGTCCCCATTAAGACTTGAATCTAAAATTTTTGTGTTTAGATCCAACGTCAATTTGTATGTCGGCTTCAATCCGGTTTTCGAGAGAACGCAAGTTCCAGTTCATATTAATCAGCGATGGAATCAACAATGGAGCATTTACAACAATTATGTGCCTGGTGTAGGTTTTTTTTCGGAGCAAAAAAATAATTTGGTGGTTGCCGATTCTTTTGTTTAGATCGTACAGTGTATTTCATAAGTTACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATTCAGTTACAATGTGAGTTG</pcr_primer_p1>
		<pcr_primer_p2>ACTTACCAAAGTGTTGCAGTCTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGATTCAGTTACAATGTGAGTTGTTAAAAATATTTTTGGAGGTTTCAACGATTATAGTTTTTAAATTTCAAAGATTCAACGACTAGAAATTCAAAAAAAAAGATTTAAAGTCGTAAAACAGGACTTGTGCCAATCCACCGACCTCATCAACACCTTCTACATCTACACCAACAACTCCAGAATCAACTACAACACCACTCGATCTATCATCAGCTCCTTTGCCAATCCTAGACTGCAACACTTTGGTAAGT</canonical_amplicon>
		<polymorphic_amplicon>TGATTCAGTTACAATGTGAGTTGTTAAAAATATTTTTGGAGGTTTCAACGATTATAGTTTTTAAATTTCAAAGATTCAACGACTAGAAATTCAAAAAAAAAGATTTAAAGTCGTAAAACAGGACTTGTGCCAATCCACCGACCTCMTCAACACCTTCTACATCTACACCAACAACTCCAGAATCAACTACAACACCACTCGATCTATCATCAGCTCCTTTGCCAATCCTAGACTGCAACACTTTGGTAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26515</snp_id>
        <super_contig>c002400810.Contig3</super_contig>
        <contig_pos>91472</contig_pos>
        <strand>+</strand>
        <context>CCTCMTCAAC[A/G]CCTTCTACAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTTAAAGTCGTAAAACAGGACTTGTGCCAATCCACCGACCTCATCAAC</left_flank>
        <right_flank>CCTTCTACATCTACACCAACAACTCCAGAATCAACTACAACACCACTCGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTGGTCCCAGTTCATATCAATCAAAGATGGTGGCTTTCTTATATCATTTACAATAATTGGAATGTAATCATTTTCTTATCTCGAATTTTTCGTATCAATATTTTCAGGGTAAATGGGGACAACGGGAAGATGTTTCAGTTCGACCATTCAGTAAAGGAATGCCATTTGTGTTGTCTGTTGTGTAAGTGGGAGGAGATGAAAAAGGAGAAATCTGAAACTTGTTTCAGAAAGACAGCCAATTCCCATATTGTATATGGAAATGGGATGGAGTTGATCAATTTCTGGAATCGAGGATCGCAAGCGGAAAATCGGATTGGAAGTATGATTGCGTATGAGGATTGGACTATTGATTCAGTTACAATGTGAGTTGTTAAAAATATTTTTGGAGGTTTCAACGATTATAGTTTTTAAATTTCAAAGATTCAACGACTAGAAATTCAAAAAAAAAGATTTAAAGTCGTAAAACAGGACTTGTGCCAATCCACCGACCTCATCAACACCTTCTACATCTACACCAACAACTCCAGAATCAACTACAACACCACTCGATCTATCATCAGCTCCTTTGCCAATCCTAGACTGCAACACTTTGGTAAGTTTCATAGCTAACTTACTCCCAAACTCATCTAACATTCAGGATCTGAAAAAATATGGAGATATTCGTTATCGTCCACTCAACTTTTCCCGTCTAATGGAGACGGGAGACAATCTCACTCTAACTGGATACATGTGGTCGAACGCTACAGAGTTGGTCCCCATTAAGACTTGAATCTAAAATTTTTGTGTTTAGATCCAACGTCAATTTGTATGTCGGCTTCAATCCGGTTTTCGAGAGAACGCAAGTTCCAGTTCATATTAATCAGCGATGGAATCAACAATGGAGCATTTACAACAATTATGTGCCTGGTGTAGGTTTTTTTTCGGAGCAAAAAAATAATTTGGTGGTTGCCGATTCTTTTGTTTAGATCGTACAGTGTATTTCATAAGTTACCAAAAAAG</canonical>
            <polymorphic>CGTGGTCCCAGTTCATATCAATCAAAGATGGTGGCTTTCTTATATCATTTACAATAATTGGAATGTAATCATTTTCTTATCTCGAATTTTTCGTATCAATATTTTCAGGGTAAATGGGGACAACGGGAAGATGTTTCAGTTCGACCATTCAGTAAAGGAATGCCATTTGTGTTGTCTGTTGTGTAAGTGGGAGGAGATGAAAAAGGAGAAATCTGAAACTTGTTTCAGAAAGACAGCCAATTCCCATATTGTATATGGAAATGGGATGGAGTTGATCAATTTCTGGAATCGAGGATCGCAAGCGGAAAATCGGATTGGAAGTATGATTGCGTATGAGGATTGGACTATTGATTCAGTTACAATGTGAGTTGTTAAAAATATTTTTGGAGGTTTCAACGATTATAGTTTTTAAATTTCAAAGATTCAACGACTAGAAATTCAAAAAAAAAGATTTAAAGTCGTAAAACAGGACTTGTGCCAATCCACCGACCTCATCAACRCCTTCTACATCTACACCAACAACTCCAGAATCAACTACAACACCACTCGATCTATCATCAGCTCCTTTGCCAATCCTAGACTGCAACACTTTGGTAAGTTTCATAGCTAACTTACTCCCAAACTCATCTAACATTCAGGATCTGAAAAAATATGGAGATATTCGTTATCGTCCACTCAACTTTTCCCGTCTAATGGAGACGGGAGACAATCTCACTCTAACTGGATACATGTGGTCGAACGCTACAGAGTTGGTCCCCATTAAGACTTGAATCTAAAATTTTTGTGTTTAGATCCAACGTCAATTTGTATGTCGGCTTCAATCCGGTTTTCGAGAGAACGCAAGTTCCAGTTCATATTAATCAGCGATGGAATCAACAATGGAGCATTTACAACAATTATGTGCCTGGTGTAGGTTTTTTTTCGGAGCAAAAAAATAATTTGGTGGTTGCCGATTCTTTTGTTTAGATCGTACAGTGTATTTCATAAGTTACCAAAAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>177 138 117 111 86 53 43 40 35 32 29 27 23 19 15 15 12 8 7 6 4 3</canonical_bands>
                <polymorphic_bands>177 138 117 111 86 53 43 40 35 32 30 29 27 23 19 12 8 7 6 4 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATTCAGTTACAATGTGAGTTG</pcr_primer_p1>
		<pcr_primer_p2>ACTTACCAAAGTGTTGCAGTCTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGATTCAGTTACAATGTGAGTTGTTAAAAATATTTTTGGAGGTTTCAACGATTATAGTTTTTAAATTTCAAAGATTCAACGACTAGAAATTCAAAAAAAAAGATTTAAAGTCGTAAAACAGGACTTGTGCCAATCCACCGACCTCATCAACACCTTCTACATCTACACCAACAACTCCAGAATCAACTACAACACCACTCGATCTATCATCAGCTCCTTTGCCAATCCTAGACTGCAACACTTTGGTAAGT</canonical_amplicon>
		<polymorphic_amplicon>TGATTCAGTTACAATGTGAGTTGTTAAAAATATTTTTGGAGGTTTCAACGATTATAGTTTTTAAATTTCAAAGATTCAACGACTAGAAATTCAAAAAAAAAGATTTAAAGTCGTAAAACAGGACTTGTGCCAATCCACCGACCTCATCAACRCCTTCTACATCTACACCAACAACTCCAGAATCAACTACAACACCACTCGATCTATCATCAGCTCCTTTGCCAATCCTAGACTGCAACACTTTGGTAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26516</snp_id>
        <super_contig>c002400810.Contig3</super_contig>
        <contig_pos>93242</contig_pos>
        <strand>+</strand>
        <context>GCACAGGGGC[C/G]TACTTAAAKG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTGGGGTTTACTTCTTGGATTGTCTTGGAGGACACAAGAGGCACAGGGGC</left_flank>
        <right_flank>TACTTAAATGGAACCGAAATACTGGCAGTGCAGGGAAGCAAAGCCAGGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTGAGAAATTCAAAAACAAACGGAAAGACAAAAAAGACCACTGGAATAAGAACAAAAAATATATAATTTGGAAAAAAAAAACAAAAAATTTAAAAAAAGTTCTAGAAATTTCATTTTTGAGACTCTACTTGCGGAAAGAGCAGGTTTGGGAGGTTGGCGGCTCCAACTCTTTCGCGTGAATAGTGTATTCATGTGACGTTTTCTTGTATTGTGTTTCTAGAGGATAAGCGGTGCCAGCAGATAACAGTACACAGTTAATTCAATGACCCATTTATTGAGGAGGGCAGAATAAAAAGGCAGTAATTTATAGGAGAAAGGAACGAAGTCTCCGGCATTGGCAGAACGTGGCTTCTTGGAAAGACAGAGGGTTCGGAGAAATTACACCTGAAATGCGCGGAGCTTCTAAGATTCAGGGAATCGGTTAGAAGCCGGCAATTCTAATTACGTTTGGGGTTTACTTCTTGGATTGTCTTGGAGGACACAAGAGGCACAGGGGCCTACTTAAATGGAACCGAAATACTGGCAGTGCAGGGAAGCAAAGCCAGGAGAAGGACTCTGGGGAAAGCCGGTGACTGTCAATGCGTGGGAGCATTGACAGGAGACAAACTCACGACAGTAAAACGGTATAAAGAAGAAGTAAAAAAGTAATCAGAAAAGACAAACAAAAAGCAACTGAAAAGGAATCCCAAAAAGCCTCCCCGAAAAGCGGAGTGTACGGAGTGGAGCGTCGGTGCGTCGAAACACGCTCCAGGTGTGTACTTTTGGAGGGGGATTTGAATTGGGGTTTTTCGATAATTTGAATAATTTAAATAAACAGAATGGACTTTATATTTGGTGTAAGATGAAGAAGAGTGAAGAAAGGGAGTAAAGGCGATCTATGATACTCACAACCGTGACAACGTGGGCGTTGTGTAGAGAGTGTCATAGAATCGATAAGTTGCCAAAATCATTCATTTTGGTGTATGTTTGGCAACACTACTGGAGTGATGGGCTTGGGA</canonical>
            <polymorphic>ATTTGAGAAATTCAAAAACAAACGGAAAGACAAAAAAGACCACTGGAATAAGAACAAAAAATATATAATTTGGAAAAAAAAAACAAAAAATTTAAAAAAAGTTCTAGAAATTTCATTTTTGAGACTCTACTTGCGGAAAGAGCAGGTTTGGGAGGTTGGCGGCTCCAACTCTTTCGCGTGAATAGTGTATTCATGTGACGTTTTCTTGTATTGTGTTTCTAGAGGATAAGCGGTGCCAGCAGATAACAGTACACAGTTAATTCAATGACCCATTTATTGAGGAGGGCAGAATAAAAAGGCAGTAATTTATAGGAGAAAGGAACGAAGTCTCCGGCATTGGCAGAACGTGGCTTCTTGGAAAGACAGAGGGTTCGGAGAAATTACACCTGAAATGCGCGGAGCTTCTAAGATTCAGGGAATCGGTTAGAAGCCGGCAATTCTAATTACGTTTGGGGTTTACTTCTTGGATTGTCTTGGAGGACACAAGAGGCACAGGGGCSTACTTAAATGGAACCGAAATACTGGCAGTGCAGGGAAGCAAAGCCAGGAGAAGGACTCTGGGGAAAGCCGGTGACTGTCAATGCGTGGGAGCATTGACAGGAGACAAACTCACGACAGTAAAACGGTATAAAGAAGAAGTAAAAAAGTAATCAGAAAAGACAAACAAAAAGCAACTGAAAAGGAATCCCAAAAAGCCTCCCCGAAAAGCGGAGTGTACGGAGTGGAGCGTCGGTGCGTCGAAACACGCTCCAGGTGTGTACTTTTGGAGGGGGATTTGAATTGGGGTTTTTCGATAATTTGAATAATTTAAATAAACAGAATGGACTTTATATTTGGTGTAAGATGAAGAAGAGTGAAGAAAGGGAGTAAAGGCGATCTATGATACTCACAACCGTGACAACGTGGGCGTTGTGTAGAGAGTGTCATAGAATCGATAAGTTGCCAAAATCATTCATTTTGGTGTATGTTTGGCAACACTACTGGAGTGATGGGCTTGGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>488 263 163 71 15</canonical_bands>
                <polymorphic_bands>488 278 163 71</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>298 188 162 128 68 51 45 29 24 7</canonical_bands>
                <polymorphic_bands>298 188 162 128 113 51 29 24 7</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAATTACGTTTGGGGTTTACTT</pcr_primer_p1>
		<pcr_primer_p2>GATTCCTTTTCAGTTGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTAATTACGTTTGGGGTTTACTTCTTGGATTGTCTTGGAGGACACAAGAGGCACAGGGGCCTACTTAAATGGAACCGAAATACTGGCAGTGCAGGGAAGCAAAGCCAGGAGAAGGACTCTGGGGAAAGCCGGTGACTGTCAATGCGTGGGAGCATTGACAGGAGACAAACTCACGACAGTAAAACGGTATAAAGAAGAAGTAAAAAAGTAATCAGAAAAGACAAACAAAAAGCAACTGAAAAGGAATC</canonical_amplicon>
		<polymorphic_amplicon>CTAATTACGTTTGGGGTTTACTTCTTGGATTGTCTTGGAGGACACAAGAGGCACAGGGGCSTACTTAAATGGAACCGAAATACTGGCAGTGCAGGGAAGCAAAGCCAGGAGAAGGACTCTGGGGAAAGCCGGTGACTGTCAATGCGTGGGAGCATTGACAGGAGACAAACTCACGACAGTAAAACGGTATAAAGAAGAAGTAAAAAAGTAATCAGAAAAGACAAACAAAAAGCAACTGAAAAGGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26517</snp_id>
        <super_contig>c002400810.Contig3</super_contig>
        <contig_pos>93251</contig_pos>
        <strand>+</strand>
        <context>CSTACTTAAA[G/T]GGAAYCGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTTCTTGGATTGTCTTGGAGGACACAAGAGGCACAGGGGCCTACTTAAA</left_flank>
        <right_flank>GGAACCGAAATACTGGCAGTGCAGGGAAGCAAAGCCAGGAGAAGGACTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCAAAAACAAACGGAAAGACAAAAAAGACCACTGGAATAAGAACAAAAAATATATAATTTGGAAAAAAAAAACAAAAAATTTAAAAAAAGTTCTAGAAATTTCATTTTTGAGACTCTACTTGCGGAAAGAGCAGGTTTGGGAGGTTGGCGGCTCCAACTCTTTCGCGTGAATAGTGTATTCATGTGACGTTTTCTTGTATTGTGTTTCTAGAGGATAAGCGGTGCCAGCAGATAACAGTACACAGTTAATTCAATGACCCATTTATTGAGGAGGGCAGAATAAAAAGGCAGTAATTTATAGGAGAAAGGAACGAAGTCTCCGGCATTGGCAGAACGTGGCTTCTTGGAAAGACAGAGGGTTCGGAGAAATTACACCTGAAATGCGCGGAGCTTCTAAGATTCAGGGAATCGGTTAGAAGCCGGCAATTCTAATTACGTTTGGGGTTTACTTCTTGGATTGTCTTGGAGGACACAAGAGGCACAGGGGCCTACTTAAATGGAACCGAAATACTGGCAGTGCAGGGAAGCAAAGCCAGGAGAAGGACTCTGGGGAAAGCCGGTGACTGTCAATGCGTGGGAGCATTGACAGGAGACAAACTCACGACAGTAAAACGGTATAAAGAAGAAGTAAAAAAGTAATCAGAAAAGACAAACAAAAAGCAACTGAAAAGGAATCCCAAAAAGCCTCCCCGAAAAGCGGAGTGTACGGAGTGGAGCGTCGGTGCGTCGAAACACGCTCCAGGTGTGTACTTTTGGAGGGGGATTTGAATTGGGGTTTTTCGATAATTTGAATAATTTAAATAAACAGAATGGACTTTATATTTGGTGTAAGATGAAGAAGAGTGAAGAAAGGGAGTAAAGGCGATCTATGATACTCACAACCGTGACAACGTGGGCGTTGTGTAGAGAGTGTCATAGAATCGATAAGTTGCCAAAATCATTCATTTTGGTGTATGTTTGGCAACACTACTGGAGTGATGGGCTTGGGAATGAACTTG</canonical>
            <polymorphic>ATTCAAAAACAAACGGAAAGACAAAAAAGACCACTGGAATAAGAACAAAAAATATATAATTTGGAAAAAAAAAACAAAAAATTTAAAAAAAGTTCTAGAAATTTCATTTTTGAGACTCTACTTGCGGAAAGAGCAGGTTTGGGAGGTTGGCGGCTCCAACTCTTTCGCGTGAATAGTGTATTCATGTGACGTTTTCTTGTATTGTGTTTCTAGAGGATAAGCGGTGCCAGCAGATAACAGTACACAGTTAATTCAATGACCCATTTATTGAGGAGGGCAGAATAAAAAGGCAGTAATTTATAGGAGAAAGGAACGAAGTCTCCGGCATTGGCAGAACGTGGCTTCTTGGAAAGACAGAGGGTTCGGAGAAATTACACCTGAAATGCGCGGAGCTTCTAAGATTCAGGGAATCGGTTAGAAGCCGGCAATTCTAATTACGTTTGGGGTTTACTTCTTGGATTGTCTTGGAGGACACAAGAGGCACAGGGGCCTACTTAAAKGGAACCGAAATACTGGCAGTGCAGGGAAGCAAAGCCAGGAGAAGGACTCTGGGGAAAGCCGGTGACTGTCAATGCGTGGGAGCATTGACAGGAGACAAACTCACGACAGTAAAACGGTATAAAGAAGAAGTAAAAAAGTAATCAGAAAAGACAAACAAAAAGCAACTGAAAAGGAATCCCAAAAAGCCTCCCCGAAAAGCGGAGTGTACGGAGTGGAGCGTCGGTGCGTCGAAACACGCTCCAGGTGTGTACTTTTGGAGGGGGATTTGAATTGGGGTTTTTCGATAATTTGAATAATTTAAATAAACAGAATGGACTTTATATTTGGTGTAAGATGAAGAAGAGTGAAGAAAGGGAGTAAAGGCGATCTATGATACTCACAACCGTGACAACGTGGGCGTTGTGTAGAGAGTGTCATAGAATCGATAAGTTGCCAAAATCATTCATTTTGGTGTATGTTTGGCAACACTACTGGAGTGATGGGCTTGGGAATGAACTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAATTACGTTTGGGGTTTACTT</pcr_primer_p1>
		<pcr_primer_p2>GATTCCTTTTCAGTTGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTAATTACGTTTGGGGTTTACTTCTTGGATTGTCTTGGAGGACACAAGAGGCACAGGGGCCTACTTAAATGGAACCGAAATACTGGCAGTGCAGGGAAGCAAAGCCAGGAGAAGGACTCTGGGGAAAGCCGGTGACTGTCAATGCGTGGGAGCATTGACAGGAGACAAACTCACGACAGTAAAACGGTATAAAGAAGAAGTAAAAAAGTAATCAGAAAAGACAAACAAAAAGCAACTGAAAAGGAATC</canonical_amplicon>
		<polymorphic_amplicon>CTAATTACGTTTGGGGTTTACTTCTTGGATTGTCTTGGAGGACACAAGAGGCACAGGGGCCTACTTAAAKGGAACCGAAATACTGGCAGTGCAGGGAAGCAAAGCCAGGAGAAGGACTCTGGGGAAAGCCGGTGACTGTCAATGCGTGGGAGCATTGACAGGAGACAAACTCACGACAGTAAAACGGTATAAAGAAGAAGTAAAAAAGTAATCAGAAAAGACAAACAAAAAGCAACTGAAAAGGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26518</snp_id>
        <super_contig>c002400810.Contig3</super_contig>
        <contig_pos>93256</contig_pos>
        <strand>+</strand>
        <context>TTAAAKGGAA[C/T]CGAAATACTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGATTGTCTTGGAGGACACAAGAGGCACAGGGGCCTACTTAAATGGAA</left_flank>
        <right_flank>CGAAATACTGGCAGTGCAGGGAAGCAAAGCCAGGAGAAGGACTCTGGGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACAAACGGAAAGACAAAAAAGACCACTGGAATAAGAACAAAAAATATATAATTTGGAAAAAAAAAACAAAAAATTTAAAAAAAGTTCTAGAAATTTCATTTTTGAGACTCTACTTGCGGAAAGAGCAGGTTTGGGAGGTTGGCGGCTCCAACTCTTTCGCGTGAATAGTGTATTCATGTGACGTTTTCTTGTATTGTGTTTCTAGAGGATAAGCGGTGCCAGCAGATAACAGTACACAGTTAATTCAATGACCCATTTATTGAGGAGGGCAGAATAAAAAGGCAGTAATTTATAGGAGAAAGGAACGAAGTCTCCGGCATTGGCAGAACGTGGCTTCTTGGAAAGACAGAGGGTTCGGAGAAATTACACCTGAAATGCGCGGAGCTTCTAAGATTCAGGGAATCGGTTAGAAGCCGGCAATTCTAATTACGTTTGGGGTTTACTTCTTGGATTGTCTTGGAGGACACAAGAGGCACAGGGGCCTACTTAAATGGAACCGAAATACTGGCAGTGCAGGGAAGCAAAGCCAGGAGAAGGACTCTGGGGAAAGCCGGTGACTGTCAATGCGTGGGAGCATTGACAGGAGACAAACTCACGACAGTAAAACGGTATAAAGAAGAAGTAAAAAAGTAATCAGAAAAGACAAACAAAAAGCAACTGAAAAGGAATCCCAAAAAGCCTCCCCGAAAAGCGGAGTGTACGGAGTGGAGCGTCGGTGCGTCGAAACACGCTCCAGGTGTGTACTTTTGGAGGGGGATTTGAATTGGGGTTTTTCGATAATTTGAATAATTTAAATAAACAGAATGGACTTTATATTTGGTGTAAGATGAAGAAGAGTGAAGAAAGGGAGTAAAGGCGATCTATGATACTCACAACCGTGACAACGTGGGCGTTGTGTAGAGAGTGTCATAGAATCGATAAGTTGCCAAAATCATTCATTTTGGTGTATGTTTGGCAACACTACTGGAGTGATGGGCTTGGGAATGAACTTGTAAGC</canonical>
            <polymorphic>AAAACAAACGGAAAGACAAAAAAGACCACTGGAATAAGAACAAAAAATATATAATTTGGAAAAAAAAAACAAAAAATTTAAAAAAAGTTCTAGAAATTTCATTTTTGAGACTCTACTTGCGGAAAGAGCAGGTTTGGGAGGTTGGCGGCTCCAACTCTTTCGCGTGAATAGTGTATTCATGTGACGTTTTCTTGTATTGTGTTTCTAGAGGATAAGCGGTGCCAGCAGATAACAGTACACAGTTAATTCAATGACCCATTTATTGAGGAGGGCAGAATAAAAAGGCAGTAATTTATAGGAGAAAGGAACGAAGTCTCCGGCATTGGCAGAACGTGGCTTCTTGGAAAGACAGAGGGTTCGGAGAAATTACACCTGAAATGCGCGGAGCTTCTAAGATTCAGGGAATCGGTTAGAAGCCGGCAATTCTAATTACGTTTGGGGTTTACTTCTTGGATTGTCTTGGAGGACACAAGAGGCACAGGGGCCTACTTAAATGGAAYCGAAATACTGGCAGTGCAGGGAAGCAAAGCCAGGAGAAGGACTCTGGGGAAAGCCGGTGACTGTCAATGCGTGGGAGCATTGACAGGAGACAAACTCACGACAGTAAAACGGTATAAAGAAGAAGTAAAAAAGTAATCAGAAAAGACAAACAAAAAGCAACTGAAAAGGAATCCCAAAAAGCCTCCCCGAAAAGCGGAGTGTACGGAGTGGAGCGTCGGTGCGTCGAAACACGCTCCAGGTGTGTACTTTTGGAGGGGGATTTGAATTGGGGTTTTTCGATAATTTGAATAATTTAAATAAACAGAATGGACTTTATATTTGGTGTAAGATGAAGAAGAGTGAAGAAAGGGAGTAAAGGCGATCTATGATACTCACAACCGTGACAACGTGGGCGTTGTGTAGAGAGTGTCATAGAATCGATAAGTTGCCAAAATCATTCATTTTGGTGTATGTTTGGCAACACTACTGGAGTGATGGGCTTGGGAATGAACTTGTAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 263 149 71 15</canonical_bands>
                <polymorphic_bands>517 263 149 71</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAATTACGTTTGGGGTTTACTT</pcr_primer_p1>
		<pcr_primer_p2>GATTCCTTTTCAGTTGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTAATTACGTTTGGGGTTTACTTCTTGGATTGTCTTGGAGGACACAAGAGGCACAGGGGCCTACTTAAATGGAACCGAAATACTGGCAGTGCAGGGAAGCAAAGCCAGGAGAAGGACTCTGGGGAAAGCCGGTGACTGTCAATGCGTGGGAGCATTGACAGGAGACAAACTCACGACAGTAAAACGGTATAAAGAAGAAGTAAAAAAGTAATCAGAAAAGACAAACAAAAAGCAACTGAAAAGGAATC</canonical_amplicon>
		<polymorphic_amplicon>CTAATTACGTTTGGGGTTTACTTCTTGGATTGTCTTGGAGGACACAAGAGGCACAGGGGCCTACTTAAATGGAAYCGAAATACTGGCAGTGCAGGGAAGCAAAGCCAGGAGAAGGACTCTGGGGAAAGCCGGTGACTGTCAATGCGTGGGAGCATTGACAGGAGACAAACTCACGACAGTAAAACGGTATAAAGAAGAAGTAAAAAAGTAATCAGAAAAGACAAACAAAAAGCAACTGAAAAGGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26519</snp_id>
        <super_contig>c002400810.Contig3</super_contig>
        <contig_pos>93357</contig_pos>
        <strand>+</strand>
        <context>CAAACTCACG[A/G]CAGTAAAACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGCCGGTGACTGTCAATGCGTGGGAGCATTGACAGGAGACAAACTCACG</left_flank>
        <right_flank>CAGTAAAACGGTATAAAGAAGAAGTAAAAAAGTAATCAGAAAAGACAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTGAGACTCTACTTGCGGAAAGAGCAGGTTTGGGAGGTTGGCGGCTCCAACTCTTTCGCGTGAATAGTGTATTCATGTGACGTTTTCTTGTATTGTGTTTCTAGAGGATAAGCGGTGCCAGCAGATAACAGTACACAGTTAATTCAATGACCCATTTATTGAGGAGGGCAGAATAAAAAGGCAGTAATTTATAGGAGAAAGGAACGAAGTCTCCGGCATTGGCAGAACGTGGCTTCTTGGAAAGACAGAGGGTTCGGAGAAATTACACCTGAAATGCGCGGAGCTTCTAAGATTCAGGGAATCGGTTAGAAGCCGGCAATTCTAATTACGTTTGGGGTTTACTTCTTGGATTGTCTTGGAGGACACAAGAGGCACAGGGGCCTACTTAAATGGAACCGAAATACTGGCAGTGCAGGGAAGCAAAGCCAGGAGAAGGACTCTGGGGAAAGCCGGTGACTGTCAATGCGTGGGAGCATTGACAGGAGACAAACTCACGACAGTAAAACGGTATAAAGAAGAAGTAAAAAAGTAATCAGAAAAGACAAACAAAAAGCAACTGAAAAGGAATCCCAAAAAGCCTCCCCGAAAAGCGGAGTGTACGGAGTGGAGCGTCGGTGCGTCGAAACACGCTCCAGGTGTGTACTTTTGGAGGGGGATTTGAATTGGGGTTTTTCGATAATTTGAATAATTTAAATAAACAGAATGGACTTTATATTTGGTGTAAGATGAAGAAGAGTGAAGAAAGGGAGTAAAGGCGATCTATGATACTCACAACCGTGACAACGTGGGCGTTGTGTAGAGAGTGTCATAGAATCGATAAGTTGCCAAAATCATTCATTTTGGTGTATGTTTGGCAACACTACTGGAGTGATGGGCTTGGGAATGAACTTGTAAGCATATTCATGGTCGAAAAATGTTTTGGTTCTGGTTTGGAGTAATTTTTGAAGGCAGATTTAAGGGGGTCAAAATTTGGAAGATTTGGCGCCTTCTTCTGGTT</canonical>
            <polymorphic>TTTTTGAGACTCTACTTGCGGAAAGAGCAGGTTTGGGAGGTTGGCGGCTCCAACTCTTTCGCGTGAATAGTGTATTCATGTGACGTTTTCTTGTATTGTGTTTCTAGAGGATAAGCGGTGCCAGCAGATAACAGTACACAGTTAATTCAATGACCCATTTATTGAGGAGGGCAGAATAAAAAGGCAGTAATTTATAGGAGAAAGGAACGAAGTCTCCGGCATTGGCAGAACGTGGCTTCTTGGAAAGACAGAGGGTTCGGAGAAATTACACCTGAAATGCGCGGAGCTTCTAAGATTCAGGGAATCGGTTAGAAGCCGGCAATTCTAATTACGTTTGGGGTTTACTTCTTGGATTGTCTTGGAGGACACAAGAGGCACAGGGGCCTACTTAAATGGAACCGAAATACTGGCAGTGCAGGGAAGCAAAGCCAGGAGAAGGACTCTGGGGAAAGCCGGTGACTGTCAATGCGTGGGAGCATTGACAGGAGACAAACTCACGRCAGTAAAACGGTATAAAGAAGAAGTAAAAAAGTAATCAGAAAAGACAAACAAAAAGCAACTGAAAAGGAATCCCAAAAAGCCTCCCCGAAAAGCGGAGTGTACGGAGTGGAGCGTCGGTGCGTCGAAACACGCTCCAGGTGTGTACTTTTGGAGGGGGATTTGAATTGGGGTTTTTCGATAATTTGAATAATTTAAATAAACAGAATGGACTTTATATTTGGTGTAAGATGAAGAAGAGTGAAGAAAGGGAGTAAAGGCGATCTATGATACTCACAACCGTGACAACGTGGGCGTTGTGTAGAGAGTGTCATAGAATCGATAAGTTGCCAAAATCATTCATTTTGGTGTATGTTTGGCAACACTACTGGAGTGATGGGCTTGGGAATGAACTTGTAAGCATATTCATGGTCGAAAAATGTTTTGGTTCTGGTTTGGAGTAATTTTTGAAGGCAGATTTAAGGGGGTCAAAATTTGGAAGATTTGGCGCCTTCTTCTGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>321 269 221 133 41 8 7</canonical_bands>
                <polymorphic_bands>321 269 221 133 49 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>504 392 104</canonical_bands>
                <polymorphic_bands>896 104</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAATTACGTTTGGGGTTTACTT</pcr_primer_p1>
		<pcr_primer_p2>GATTCCTTTTCAGTTGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTAATTACGTTTGGGGTTTACTTCTTGGATTGTCTTGGAGGACACAAGAGGCACAGGGGCCTACTTAAATGGAACCGAAATACTGGCAGTGCAGGGAAGCAAAGCCAGGAGAAGGACTCTGGGGAAAGCCGGTGACTGTCAATGCGTGGGAGCATTGACAGGAGACAAACTCACGACAGTAAAACGGTATAAAGAAGAAGTAAAAAAGTAATCAGAAAAGACAAACAAAAAGCAACTGAAAAGGAATC</canonical_amplicon>
		<polymorphic_amplicon>CTAATTACGTTTGGGGTTTACTTCTTGGATTGTCTTGGAGGACACAAGAGGCACAGGGGCCTACTTAAATGGAACCGAAATACTGGCAGTGCAGGGAAGCAAAGCCAGGAGAAGGACTCTGGGGAAAGCCGGTGACTGTCAATGCGTGGGAGCATTGACAGGAGACAAACTCACGRCAGTAAAACGGTATAAAGAAGAAGTAAAAAAGTAATCAGAAAAGACAAACAAAAAGCAACTGAAAAGGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26520</snp_id>
        <super_contig>c002400810.Contig3</super_contig>
        <contig_pos>93437</contig_pos>
        <strand>+</strand>
        <context>ATCCCAAAAA[G/T]CCTCCCCGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGTAATCAGAAAAGACAAACAAAAAGCAACTGAAAAGGAATCCCAAAAA</left_flank>
        <right_flank>CCTCCCCGAAAAGCGGAGTGTACGGAGTGGAGCGTCGGTGCGTCGAAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACGTTTTCTTGTATTGTGTTTCTAGAGGATAAGCGGTGCCAGCAGATAACAGTACACAGTTAATTCAATGACCCATTTATTGAGGAGGGCAGAATAAAAAGGCAGTAATTTATAGGAGAAAGGAACGAAGTCTCCGGCATTGGCAGAACGTGGCTTCTTGGAAAGACAGAGGGTTCGGAGAAATTACACCTGAAATGCGCGGAGCTTCTAAGATTCAGGGAATCGGTTAGAAGCCGGCAATTCTAATTACGTTTGGGGTTTACTTCTTGGATTGTCTTGGAGGACACAAGAGGCACAGGGGCCTACTTAAATGGAACCGAAATACTGGCAGTGCAGGGAAGCAAAGCCAGGAGAAGGACTCTGGGGAAAGCCGGTGACTGTCAATGCGTGGGAGCATTGACAGGAGACAAACTCACGACAGTAAAACGGTATAAAGAAGAAGTAAAAAAGTAATCAGAAAAGACAAACAAAAAGCAACTGAAAAGGAATCCCAAAAAGCCTCCCCGAAAAGCGGAGTGTACGGAGTGGAGCGTCGGTGCGTCGAAACACGCTCCAGGTGTGTACTTTTGGAGGGGGATTTGAATTGGGGTTTTTCGATAATTTGAATAATTTAAATAAACAGAATGGACTTTATATTTGGTGTAAGATGAAGAAGAGTGAAGAAAGGGAGTAAAGGCGATCTATGATACTCACAACCGTGACAACGTGGGCGTTGTGTAGAGAGTGTCATAGAATCGATAAGTTGCCAAAATCATTCATTTTGGTGTATGTTTGGCAACACTACTGGAGTGATGGGCTTGGGAATGAACTTGTAAGCATATTCATGGTCGAAAAATGTTTTGGTTCTGGTTTGGAGTAATTTTTGAAGGCAGATTTAAGGGGGTCAAAATTTGGAAGATTTGGCGCCTTCTTCTGGTTTCAAATTTTCCTTAAAATTTATTCTCATGCTTAATTGGAAAAATGTCAATAGTCACGAGAATTTCTGGGAATTCAGAAGA</canonical>
            <polymorphic>TGACGTTTTCTTGTATTGTGTTTCTAGAGGATAAGCGGTGCCAGCAGATAACAGTACACAGTTAATTCAATGACCCATTTATTGAGGAGGGCAGAATAAAAAGGCAGTAATTTATAGGAGAAAGGAACGAAGTCTCCGGCATTGGCAGAACGTGGCTTCTTGGAAAGACAGAGGGTTCGGAGAAATTACACCTGAAATGCGCGGAGCTTCTAAGATTCAGGGAATCGGTTAGAAGCCGGCAATTCTAATTACGTTTGGGGTTTACTTCTTGGATTGTCTTGGAGGACACAAGAGGCACAGGGGCCTACTTAAATGGAACCGAAATACTGGCAGTGCAGGGAAGCAAAGCCAGGAGAAGGACTCTGGGGAAAGCCGGTGACTGTCAATGCGTGGGAGCATTGACAGGAGACAAACTCACGACAGTAAAACGGTATAAAGAAGAAGTAAAAAAGTAATCAGAAAAGACAAACAAAAAGCAACTGAAAAGGAATCCCAAAAAKCCTCCCCGAAAAGCGGAGTGTACGGAGTGGAGCGTCGGTGCGTCGAAACACGCTCCAGGTGTGTACTTTTGGAGGGGGATTTGAATTGGGGTTTTTCGATAATTTGAATAATTTAAATAAACAGAATGGACTTTATATTTGGTGTAAGATGAAGAAGAGTGAAGAAAGGGAGTAAAGGCGATCTATGATACTCACAACCGTGACAACGTGGGCGTTGTGTAGAGAGTGTCATAGAATCGATAAGTTGCCAAAATCATTCATTTTGGTGTATGTTTGGCAACACTACTGGAGTGATGGGCTTGGGAATGAACTTGTAAGCATATTCATGGTCGAAAAATGTTTTGGTTCTGGTTTGGAGTAATTTTTGAAGGCAGATTTAAGGGGGTCAAAATTTGGAAGATTTGGCGCCTTCTTCTGGTTTCAAATTTTCCTTAAAATTTATTCTCATGCTTAATTGGAAAAATGTCAATAGTCACGAGAATTTCTGGGAATTCAGAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>298 202 155 128 68 51 45 29 24</canonical_bands>
                <polymorphic_bands>426 202 155 68 51 45 29 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCATTGACAGGAGACAAAC</pcr_primer_p1>
		<pcr_primer_p2>CACCAAATATAAAGTCCATTCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCATTGACAGGAGACAAACTCACGACAGTAAAACGGTATAAAGAAGAAGTAAAAAAGTAATCAGAAAAGACAAACAAAAAGCAACTGAAAAGGAATCCCAAAAAGCCTCCCCGAAAAGCGGAGTGTACGGAGTGGAGCGTCGGTGCGTCGAAACACGCTCCAGGTGTGTACTTTTGGAGGGGGATTTGAATTGGGGTTTTTCGATAATTTGAATAATTTAAATAAACAGAATGGACTTTATATTTGGTG</canonical_amplicon>
		<polymorphic_amplicon>AGCATTGACAGGAGACAAACTCACGACAGTAAAACGGTATAAAGAAGAAGTAAAAAAGTAATCAGAAAAGACAAACAAAAAGCAACTGAAAAGGAATCCCAAAAAKCCTCCCCGAAAAGCGGAGTGTACGGAGTGGAGCGTCGGTGCGTCGAAACACGCTCCAGGTGTGTACTTTTGGAGGGGGATTTGAATTGGGGTTTTTCGATAATTTGAATAATTTAAATAAACAGAATGGACTTTATATTTGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26521</snp_id>
        <super_contig>c002400817.Contig2</super_contig>
        <contig_pos>28870</contig_pos>
        <strand>+</strand>
        <context>ATTCATTGTY[C/T]TGTGCCTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCGCATGTTTTTTCGAATTCTATATGTTTCACATACTATATTCATTGTC</left_flank>
        <right_flank>TGTGCCTTTGCTCGATGAAAATCGGTCAGGAATTCGATGAAATTGAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATTTTGCCTGAAAAGCCGGTATTTTCAGTGTAGAACGGCAGGCCAATGAAGTTCTCGTAGTTGGACACTAGAATCGCGTCGATTCGGTCCATTTTCAGCATTTCTGCCTGGAAATTTCAGCAAATTTTTGTTGTTTTTAGATTTCCCGCCTACCGATACATGGAAAATTTCAGGCGGTCCGTCGATATAGACCCGGTGCGAGAGCTCTTTGATATATGGAATACCGAATTTTTTAACGATATGCGCATTTTTGAATCGCGGACTGTAAATTTTAGTTATATAAAAAATTTTCCATCGATTTTCAGTCGCTTGCCTCTGATACACATGTGGCATGAAGCTGAAAAACGGGGTATAGTCTATTGGTGTGTCGAGAAGGATTCGGGAATTTGGCCACTGCAACACATAGCACGGCTTGTGTCCGTGTTTTGTGTAACTTGTCTGCAAAATTTCGCATGTTTTTTCGAATTCTATATGTTTCACATACTATATTCATTGTCTTGTGCCTTTGCTCGATGAAAATCGGTCAGGAATTCGATGAAATTGAATTTACTTTTCGAAAAACCAGTTTCGCGCCAAGGAGCAGGCAAGGCGCACTTGGCGATCCTCCTTGGCGCAATTCTCGTTTTTCTATTTTCGAAAAGATTTTTGACCGATTTTAATTGATTTTTGGCATATTTCCAGTCAAAAATGTCATCTAAATACGCGAAAAAGCGAAAACAACTCGACGACGACACTTCCGAAGCGAGCAGAAGTCGTCGTGACTCGTCCAGATCGCCATCTCCTTCAAGGTCGAAAAGGTGAGATTTTCAAGGTTTTTTCATTGGAATTTTGATTTTTTCAGGTCGGCAAAACAACGAGAACCAGAGAATAATGGAGAGCCGTAAGTTGTTTTCTGCGAAAAAATTCCTTAGCCAAAAAATCTATTTTATGCATTTTTTCTAATTTTCAGCTGGAAAAGTTCAAATATCATGATTTACGGGCAAGATGAGCCTGAAAAT</canonical>
            <polymorphic>AGATTTTGCCTGAAAAGCCGGTATTTTCAGTGTAGAACGGCAGGCCAATGAAGTTCTCGTAGTTGGACACTAGAATCGCGTCGATTCGGTCCATTTTCAGCATTTCTGCCTGGAAATTTCAGCAAATTTTTGTTGTTTTTAGATTTCCCGCCTACCGATACATGGAAAATTTCAGGCGGTCCGTCGATATAGACCCGGTGCGAGAGCTCTTTGATATATGGAATACCGAATTTTTTAACGATATGCGCATTTTTGAATCGCGGACTGTAAATTTTAGTTATATAAAAAATTTTCCATCGATTTTCAGTCGCTTGCCTCTGATACACATGTGGCATGAAGCTGAAAAACGGGGTATAGTCTATTGGTGTGTCGAGAAGGATTCGGGAATTTGGCCACTGCAACACATAGCACGGCTTGTGTCCGTGTTTTGTGTAACTTGTCTGCAAAATTTCGCATGTTTTTTCGAATTCTATATGTTTCACATACTATATTCATTGTCYTGTGCCTTTGCTCGATGAAAATCGGTCAGGAATTCGATGAAATTGAATTTACTTTTCGAAAAACCAGTTTCGCGCCAAGGAGCAGGCAAGGCGCACTTGGCGATCCTCCTTGGCGCAATTCTCGTTTTTCTATTTTCGAAAAGATTTTTGACCGATTTTAATTGATTTTTGGCATATTTCCAGTCAAAAATGTCATCTAAATACGCGAAAAAGCGAAAACAACTCGACGACGACACTTCCGAAGCGAGCAGAAGTCGTCGTGACTCGTCCAGATCGCCATCTCCTTCAAGGTCGAAAAGGTGAGATTTTCAAGGTTTTTTCATTGGAATTTTGATTTTTTCAGGTCGGCAAAACAACGAGAACCAGAGAATAATGGAGAGCCGTAAGTTGTTTTCTGCGAAAAAATTCCTTAGCCAAAAAATCTATTTTATGCATTTTTTCTAATTTTCAGCTGGAAAAGTTCAAATATCATGATTTACGGGCAAGATGAGCCTGAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTGTAACTTGTCTGCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TATGCCAAAAATCAATTAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGTGTAACTTGTCTGCAAAATTTCGCATGTTTTTTCGAATTCTATATGTTTCACATACTATATTCATTGTCTTGTGCCTTTGCTCGATGAAAATCGGTCAGGAATTCGATGAAATTGAATTTACTTTTCGAAAAACCAGTTTCGCGCCAAGGAGCAGGCAAGGCGCACTTGGCGATCCTCCTTGGCGCAATTCTCGTTTTTCTATTTTCGAAAAGATTTTTGACCGATTTTAATTGATTTTTGGCATA</canonical_amplicon>
		<polymorphic_amplicon>TTGTGTAACTTGTCTGCAAAATTTCGCATGTTTTTTCGAATTCTATATGTTTCACATACTATATTCATTGTCYTGTGCCTTTGCTCGATGAAAATCGGTCAGGAATTCGATGAAATTGAATTTACTTTTCGAAAAACCAGTTTCGCGCCAAGGAGCAGGCAAGGCGCACTTGGCGATCCTCCTTGGCGCAATTCTCGTTTTTCTATTTTCGAAAAGATTTTTGACCGATTTTAATTGATTTTTGGCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26522</snp_id>
        <super_contig>c002400817.Contig2</super_contig>
        <contig_pos>31691</contig_pos>
        <strand>+</strand>
        <context>CCAAATTTCT[C/G]TAAAAACTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAAAGCTTTGGAAAATGCCTTATTTTGCCTTCAAATTTATCCAAATTTCT</left_flank>
        <right_flank>TAAAAACTCCCAAATTTTGCAGCTCAAAAACTTTGGAGTGCTCGCGAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAATCGCAATTTCGACGAGGATGTCGATGAGTTTGGCAATGTAAGTGGTTTTGAGAGGTCGAATTTCGGCGGAAAACGGTCTAAAATTGACTGAAAATAGCCTCAAAATTCGCCAAAATTAACTCAAATCGGTCTAGAACGGCCTAAACTAGGCCGAATTGACTGACGAATTGAGTGAAACTATCCTAAAAATGACCTACCAGGACCTGAAATGGACGCGAATAGGCTGAAATTGATTAAAATAGGTTTTTTTGGCTTAAAATGCGACTTTTTGACCTTGAAAATCTTCTAAAACCCTTGTTTCGGAGCCTAATTTCACCCCAAACTCATCTGAAAAAATCGAAAATCCTTCAATTTGCAGCTGAAAAACTCATTTTGGCTCCAATTTGACCCCAAAAGTTGAGAAAAATGCGCTAATTTTTGGCTTAAAATGTGACTTTTTGACCTTGAAAGCTTTGGAAAATGCCTTATTTTGCCTTCAAATTTATCCAAATTTCTCTAAAAACTCCCAAATTTTGCAGCTCAAAAACTTTGGAGTGCTCGCGAAGTACGACGAAACACTTGAAGGCGAACAGAAGAAGCAATTCCGGCTGGACGAGACGGGCGGTGTGGATCTAGAAGAGGAGAAACGAGAGATGGAAGCATTCCGACGCATGAAAATGGCCGGGAAGCGTCTGGAGAGTTTGGAAACCAAAAAATACGAATTGGCCAGCGAATTCTACACCCAGGACGAAATGACACAGTTCAGAAAGGTCAAGAAGGGCAAAAAAGAGAAGAATATCAGGAAGAGGAAGGTTCTGAAGGCGTCAGACTTGGTGCCAGTCGAGAAGGCCGGGCAGAGTTTTGGAAGACGTCGAAGGGATTCTGATGAAACTCAAGACGATAAGGAGAAAGTAGAGGAAGACGTGAAGATGGAGGAAGAAGGGGAGCTTCCGGAAGCGCCAGAAGACAAGAAATGGAAGAAGGCGATGACTGGAAACGGTGTGGATGTGCAACGTC</canonical>
            <polymorphic>CGAATCGCAATTTCGACGAGGATGTCGATGAGTTTGGCAATGTAAGTGGTTTTGAGAGGTCGAATTTCGGCGGAAAACGGTCTAAAATTGACTGAAAATAGCCTCAAAATTCGCCAAAATTAACTCAAATCGGTCTAGAACGGCCTAAACTAGGCCGAATTGACTGACGAATTGAGTGAAACTATCCTAAAAATGACCTACCAGGACCTGAAATGGACGCGAATAGGCTGAAATTGATTAAAATAGGTTTTTTTGGCTTAAAATGCGACTTTTTGACCTTGAAAATCTTCTAAAACCCTTGTTTCGGAGCCTAATTTCACCCCAAACTCATCTGAAAAAATCGAAAATCCTTCAATTTGCAGCTGAAAAACTCATTTTGGCTCCAATTTGACCCCAAAAGTTGAGAAAAATGCGCTAATTTTTGGCTTAAAATGTGACTTTTTGACCTTGAAAGCTTTGGAAAATGCCTTATTTTGCCTTCAAATTTATCCAAATTTCTSTAAAAACTCCCAAATTTTGCAGCTCAAAAACTTTGGAGTGCTCGCGAAGTACGACGAAACACTTGAAGGCGAACAGAAGAAGCAATTCCGGCTGGACGAGACGGGCGGTGTGGATCTAGAAGAGGAGAAACGAGAGATGGAAGCATTCCGACGCATGAAAATGGCCGGGAAGCGTCTGGAGAGTTTGGAAACCAAAAAATACGAATTGGCCAGCGAATTCTACACCCAGGACGAAATGACACAGTTCAGAAAGGTCAAGAAGGGCAAAAAAGAGAAGAATATCAGGAAGAGGAAGGTTCTGAAGGCGTCAGACTTGGTGCCAGTCGAGAAGGCCGGGCAGAGTTTTGGAAGACGTCGAAGGGATTCTGATGAAACTCAAGACGATAAGGAGAAAGTAGAGGAAGACGTGAAGATGGAGGAAGAAGGGGAGCTTCCGGAAGCGCCAGAAGACAAGAAATGGAAGAAGGCGATGACTGGAAACGGTGTGGATGTGCAACGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCCAAAAGTTGAGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CATCTCTCGTTTCTCCTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCCCAAAAGTTGAGAAAAATGCGCTAATTTTTGGCTTAAAATGTGACTTTTTGACCTTGAAAGCTTTGGAAAATGCCTTATTTTGCCTTCAAATTTATCCAAATTTCTCTAAAAACTCCCAAATTTTGCAGCTCAAAAACTTTGGAGTGCTCGCGAAGTACGACGAAACACTTGAAGGCGAACAGAAGAAGCAATTCCGGCTGGACGAGACGGGCGGTGTGGATCTAGAAGAGGAGAAACGAGAGATG</canonical_amplicon>
		<polymorphic_amplicon>CCCCAAAAGTTGAGAAAAATGCGCTAATTTTTGGCTTAAAATGTGACTTTTTGACCTTGAAAGCTTTGGAAAATGCCTTATTTTGCCTTCAAATTTATCCAAATTTCTSTAAAAACTCCCAAATTTTGCAGCTCAAAAACTTTGGAGTGCTCGCGAAGTACGACGAAACACTTGAAGGCGAACAGAAGAAGCAATTCCGGCTGGACGAGACGGGCGGTGTGGATCTAGAAGAGGAGAAACGAGAGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26523</snp_id>
        <super_contig>c002400817.Contig2</super_contig>
        <contig_pos>31752</contig_pos>
        <strand>+</strand>
        <context>ACGACGAAAC[A/G]CTTGAAGGCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAATTTTGCAGCTCAAAAACTTTGGAGTGCTCGCGAAGTACGACGAAAC</left_flank>
        <right_flank>CTTGAAGGCGAACAGAAGAAGCAATTCCGGCTGGACGAGACGGGCGGTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTTCGGCGGAAAACGGTCTAAAATTGACTGAAAATAGCCTCAAAATTCGCCAAAATTAACTCAAATCGGTCTAGAACGGCCTAAACTAGGCCGAATTGACTGACGAATTGAGTGAAACTATCCTAAAAATGACCTACCAGGACCTGAAATGGACGCGAATAGGCTGAAATTGATTAAAATAGGTTTTTTTGGCTTAAAATGCGACTTTTTGACCTTGAAAATCTTCTAAAACCCTTGTTTCGGAGCCTAATTTCACCCCAAACTCATCTGAAAAAATCGAAAATCCTTCAATTTGCAGCTGAAAAACTCATTTTGGCTCCAATTTGACCCCAAAAGTTGAGAAAAATGCGCTAATTTTTGGCTTAAAATGTGACTTTTTGACCTTGAAAGCTTTGGAAAATGCCTTATTTTGCCTTCAAATTTATCCAAATTTCTCTAAAAACTCCCAAATTTTGCAGCTCAAAAACTTTGGAGTGCTCGCGAAGTACGACGAAACACTTGAAGGCGAACAGAAGAAGCAATTCCGGCTGGACGAGACGGGCGGTGTGGATCTAGAAGAGGAGAAACGAGAGATGGAAGCATTCCGACGCATGAAAATGGCCGGGAAGCGTCTGGAGAGTTTGGAAACCAAAAAATACGAATTGGCCAGCGAATTCTACACCCAGGACGAAATGACACAGTTCAGAAAGGTCAAGAAGGGCAAAAAAGAGAAGAATATCAGGAAGAGGAAGGTTCTGAAGGCGTCAGACTTGGTGCCAGTCGAGAAGGCCGGGCAGAGTTTTGGAAGACGTCGAAGGGATTCTGATGAAACTCAAGACGATAAGGAGAAAGTAGAGGAAGACGTGAAGATGGAGGAAGAAGGGGAGCTTCCGGAAGCGCCAGAAGACAAGAAATGGAAGAAGGCGATGACTGGAAACGGTGTGGATGTGCAACGTCTTCTGAAGCTTCGAGCATCAACACGTCAGAAGGATTCAGATGAGGATTCTGACGATGACTT</canonical>
            <polymorphic>GAATTTCGGCGGAAAACGGTCTAAAATTGACTGAAAATAGCCTCAAAATTCGCCAAAATTAACTCAAATCGGTCTAGAACGGCCTAAACTAGGCCGAATTGACTGACGAATTGAGTGAAACTATCCTAAAAATGACCTACCAGGACCTGAAATGGACGCGAATAGGCTGAAATTGATTAAAATAGGTTTTTTTGGCTTAAAATGCGACTTTTTGACCTTGAAAATCTTCTAAAACCCTTGTTTCGGAGCCTAATTTCACCCCAAACTCATCTGAAAAAATCGAAAATCCTTCAATTTGCAGCTGAAAAACTCATTTTGGCTCCAATTTGACCCCAAAAGTTGAGAAAAATGCGCTAATTTTTGGCTTAAAATGTGACTTTTTGACCTTGAAAGCTTTGGAAAATGCCTTATTTTGCCTTCAAATTTATCCAAATTTCTCTAAAAACTCCCAAATTTTGCAGCTCAAAAACTTTGGAGTGCTCGCGAAGTACGACGAAACRCTTGAAGGCGAACAGAAGAAGCAATTCCGGCTGGACGAGACGGGCGGTGTGGATCTAGAAGAGGAGAAACGAGAGATGGAAGCATTCCGACGCATGAAAATGGCCGGGAAGCGTCTGGAGAGTTTGGAAACCAAAAAATACGAATTGGCCAGCGAATTCTACACCCAGGACGAAATGACACAGTTCAGAAAGGTCAAGAAGGGCAAAAAAGAGAAGAATATCAGGAAGAGGAAGGTTCTGAAGGCGTCAGACTTGGTGCCAGTCGAGAAGGCCGGGCAGAGTTTTGGAAGACGTCGAAGGGATTCTGATGAAACTCAAGACGATAAGGAGAAAGTAGAGGAAGACGTGAAGATGGAGGAAGAAGGGGAGCTTCCGGAAGCGCCAGAAGACAAGAAATGGAAGAAGGCGATGACTGGAAACGGTGTGGATGTGCAACGTCTTCTGAAGCTTCGAGCATCAACACGTCAGAAGGATTCAGATGAGGATTCTGACGATGACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>141 117 117 112 104 90 78 76 49 38 30 21 17 6 2 2</canonical_bands>
                <polymorphic_bands>141 117 117 112 104 90 78 76 70 38 30 17 6 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCCAAAAGTTGAGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CATCTCTCGTTTCTCCTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCCCAAAAGTTGAGAAAAATGCGCTAATTTTTGGCTTAAAATGTGACTTTTTGACCTTGAAAGCTTTGGAAAATGCCTTATTTTGCCTTCAAATTTATCCAAATTTCTCTAAAAACTCCCAAATTTTGCAGCTCAAAAACTTTGGAGTGCTCGCGAAGTACGACGAAACACTTGAAGGCGAACAGAAGAAGCAATTCCGGCTGGACGAGACGGGCGGTGTGGATCTAGAAGAGGAGAAACGAGAGATG</canonical_amplicon>
		<polymorphic_amplicon>CCCCAAAAGTTGAGAAAAATGCGCTAATTTTTGGCTTAAAATGTGACTTTTTGACCTTGAAAGCTTTGGAAAATGCCTTATTTTGCCTTCAAATTTATCCAAATTTCTCTAAAAACTCCCAAATTTTGCAGCTCAAAAACTTTGGAGTGCTCGCGAAGTACGACGAAACRCTTGAAGGCGAACAGAAGAAGCAATTCCGGCTGGACGAGACGGGCGGTGTGGATCTAGAAGAGGAGAAACGAGAGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26524</snp_id>
        <super_contig>c002400817.Contig2</super_contig>
        <contig_pos>54665</contig_pos>
        <strand>+</strand>
        <context>GATGGATGTC[A/G]AATACGCAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATATTCCAACGTCACCGAGGAATTCAAGAAGTTCCGTGTGATGGATGTC</left_flank>
        <right_flank>AATACGCAGCTCCACACTCCCCCGAGCTCCGTGCTAGCCAAGTCAACACA</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTAATCTCTATTGATCATTCTTATCATAGAATTCATAAACTCCACTCTTCTGAAACAGAGATTCTGCAAAAAGTACAAATGTCCGAACATTGAGTTTTGTAAAAATGAACTGTAACTAAAGTGGATTCCGGTTCATCTGCTTTCCTGAACCGATTAAGACTCAACTGATAAGCATATAGCAAACCGAAGAGCAGAATAAAATAAGAAGAGTCGAAAGTTTGAAAAACAGCAGGTTTGGTATAAAAAGGGGAAAAATACATCTCTTTGATCAAGCATGATGGTGACAACCATGATGGTGAGTAAACTTTTTGAACAAATTTTAGATTTTTCATATTCAGAAGATTCTTGTTCTGGCCGTACTGCTAGAAGCCACTTCTGCATTCGTCCCAATCACCGGACAAGCTCTCGTTAACTATGTCAATTCTGCCCAATCCATGTTCACCGCTGAATATTCCAACGTCACCGAGGAATTCAAGAAGTTCCGTGTGATGGATGTCAAATACGCAGCTCCACACTCCCCCGAGCTCCGTGCTAGCCAAGTCAACACAGTCCTTCCTTCCATCCCAACCTACTTCGACGCTCGTACCCGTTGGCCTAACTGCAGATCCATCAAAATGATTCGAAATCAAGCAACATGTGGATCCTGCTGGGCTTTTGGTGCTGCTGAAGTCATGTCAGACCGTATTTGCATTGCTAGTATGGGCACCAAACAACCAATTATCTCTCCGACCGATCTTCTTTCCTGTTGTGGAAATTTCTGTGGTTACGGATGTAAAGGAGCAAGTCCACTGCAAGCTTTCAGATGGTGGAATAAAAAGGGAGTTGTTACTGGGGGAGACTACCGTGGAAGTGGATGCAAGCCATATCCATTTGCACCATGCACTGCTTTACCTTGCACAAAGTCCGAGACCCCAAGATGTTCCTTGAACTGTCAACCAGCATACTCAAAAGCCTACTCTAAGGACAAGTACTTCGGTTAGTGACATTTAGGTGTCCAA</canonical>
            <polymorphic>TTGTAATCTCTATTGATCATTCTTATCATAGAATTCATAAACTCCACTCTTCTGAAACAGAGATTCTGCAAAAAGTACAAATGTCCGAACATTGAGTTTTGTAAAAATGAACTGTAACTAAAGTGGATTCCGGTTCATCTGCTTTCCTGAACCGATTAAGACTCAACTGATAAGCATATAGCAAACCGAAGAGCAGAATAAAATAAGAAGAGTCGAAAGTTTGAAAAACAGCAGGTTTGGTATAAAAAGGGGAAAAATACATCTCTTTGATCAAGCATGATGGTGACAACCATGATGGTGAGTAAACTTTTTGAACAAATTTTAGATTTTTCATATTCAGAAGATTCTTGTTCTGGCCGTACTGCTAGAAGCCACTTCTGCATTCGTCCCAATCACCGGACAAGCTCTCGTTAACTATGTCAATTCTGCCCAATCCATGTTCACCGCTGAATATTCCAACGTCACCGAGGAATTCAAGAAGTTCCGTGTGATGGATGTCRAATACGCAGCTCCACACTCCCCCGAGCTCCGTGCTAGCCAAGTCAACACAGTCCTTCCTTCCATCCCAACCTACTTCGACGCTCGTACCCGTTGGCCTAACTGCAGATCCATCAAAATGATTCGAAATCAAGCAACATGTGGATCCTGCTGGGCTTTTGGTGCTGCTGAAGTCATGTCAGACCGTATTTGCATTGCTAGTATGGGCACCAAACAACCAATTATCTCTCCGACCGATCTTCTTTCCTGTTGTGGAAATTTCTGTGGTTACGGATGTAAAGGAGCAAGTCCACTGCAAGCTTTCAGATGGTGGAATAAAAAGGGAGTTGTTACTGGGGGAGACTACCGTGGAAGTGGATGCAAGCCATATCCATTTGCACCATGCACTGCTTTACCTTGCACAAAGTCCGAGACCCCAAGATGTTCCTTGAACTGTCAACCAGCATACTCAAAAGCCTACTCTAAGGACAAGTACTTCGGTTAGTGACATTTAGGTGTCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAGCTCTCGTTAACTATGTCA</pcr_primer_p1>
		<pcr_primer_p2>ATCCACATGTTGCTTGATTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACAAGCTCTCGTTAACTATGTCAATTCTGCCCAATCCATGTTCACCGCTGAATATTCCAACGTCACCGAGGAATTCAAGAAGTTCCGTGTGATGGATGTCAAATACGCAGCTCCACACTCCCCCGAGCTCCGTGCTAGCCAAGTCAACACAGTCCTTCCTTCCATCCCAACCTACTTCGACGCTCGTACCCGTTGGCCTAACTGCAGATCCATCAAAATGATTCGAAATCAAGCAACATGTGGAT</canonical_amplicon>
		<polymorphic_amplicon>ACAAGCTCTCGTTAACTATGTCAATTCTGCCCAATCCATGTTCACCGCTGAATATTCCAACGTCACCGAGGAATTCAAGAAGTTCCGTGTGATGGATGTCRAATACGCAGCTCCACACTCCCCCGAGCTCCGTGCTAGCCAAGTCAACACAGTCCTTCCTTCCATCCCAACCTACTTCGACGCTCGTACCCGTTGGCCTAACTGCAGATCCATCAAAATGATTCGAAATCAAGCAACATGTGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26525</snp_id>
        <super_contig>c002400817.Contig2</super_contig>
        <contig_pos>54676</contig_pos>
        <strand>+</strand>
        <context>AATACGCAGC[G/T]CCACACTCCC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTCACCGAGGAATTCAAGAAGTTCCGTGTGATGGATGTCAAATACGCAGC</left_flank>
        <right_flank>CCACACTCCCCCGAGCTCCGTGCTAGCCAAGTCAACACAGTCCTTCCTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGATCATTCTTATCATAGAATTCATAAACTCCACTCTTCTGAAACAGAGATTCTGCAAAAAGTACAAATGTCCGAACATTGAGTTTTGTAAAAATGAACTGTAACTAAAGTGGATTCCGGTTCATCTGCTTTCCTGAACCGATTAAGACTCAACTGATAAGCATATAGCAAACCGAAGAGCAGAATAAAATAAGAAGAGTCGAAAGTTTGAAAAACAGCAGGTTTGGTATAAAAAGGGGAAAAATACATCTCTTTGATCAAGCATGATGGTGACAACCATGATGGTGAGTAAACTTTTTGAACAAATTTTAGATTTTTCATATTCAGAAGATTCTTGTTCTGGCCGTACTGCTAGAAGCCACTTCTGCATTCGTCCCAATCACCGGACAAGCTCTCGTTAACTATGTCAATTCTGCCCAATCCATGTTCACCGCTGAATATTCCAACGTCACCGAGGAATTCAAGAAGTTCCGTGTGATGGATGTCAAATACGCAGCTCCACACTCCCCCGAGCTCCGTGCTAGCCAAGTCAACACAGTCCTTCCTTCCATCCCAACCTACTTCGACGCTCGTACCCGTTGGCCTAACTGCAGATCCATCAAAATGATTCGAAATCAAGCAACATGTGGATCCTGCTGGGCTTTTGGTGCTGCTGAAGTCATGTCAGACCGTATTTGCATTGCTAGTATGGGCACCAAACAACCAATTATCTCTCCGACCGATCTTCTTTCCTGTTGTGGAAATTTCTGTGGTTACGGATGTAAAGGAGCAAGTCCACTGCAAGCTTTCAGATGGTGGAATAAAAAGGGAGTTGTTACTGGGGGAGACTACCGTGGAAGTGGATGCAAGCCATATCCATTTGCACCATGCACTGCTTTACCTTGCACAAAGTCCGAGACCCCAAGATGTTCCTTGAACTGTCAACCAGCATACTCAAAAGCCTACTCTAAGGACAAGTACTTCGGTTAGTGACATTTAGGTGTCCAACCAACTTTTAA</canonical>
            <polymorphic>ATTGATCATTCTTATCATAGAATTCATAAACTCCACTCTTCTGAAACAGAGATTCTGCAAAAAGTACAAATGTCCGAACATTGAGTTTTGTAAAAATGAACTGTAACTAAAGTGGATTCCGGTTCATCTGCTTTCCTGAACCGATTAAGACTCAACTGATAAGCATATAGCAAACCGAAGAGCAGAATAAAATAAGAAGAGTCGAAAGTTTGAAAAACAGCAGGTTTGGTATAAAAAGGGGAAAAATACATCTCTTTGATCAAGCATGATGGTGACAACCATGATGGTGAGTAAACTTTTTGAACAAATTTTAGATTTTTCATATTCAGAAGATTCTTGTTCTGGCCGTACTGCTAGAAGCCACTTCTGCATTCGTCCCAATCACCGGACAAGCTCTCGTTAACTATGTCAATTCTGCCCAATCCATGTTCACCGCTGAATATTCCAACGTCACCGAGGAATTCAAGAAGTTCCGTGTGATGGATGTCAAATACGCAGCKCCACACTCCCCCGAGCTCCGTGCTAGCCAAGTCAACACAGTCCTTCCTTCCATCCCAACCTACTTCGACGCTCGTACCCGTTGGCCTAACTGCAGATCCATCAAAATGATTCGAAATCAAGCAACATGTGGATCCTGCTGGGCTTTTGGTGCTGCTGAAGTCATGTCAGACCGTATTTGCATTGCTAGTATGGGCACCAAACAACCAATTATCTCTCCGACCGATCTTCTTTCCTGTTGTGGAAATTTCTGTGGTTACGGATGTAAAGGAGCAAGTCCACTGCAAGCTTTCAGATGGTGGAATAAAAAGGGAGTTGTTACTGGGGGAGACTACCGTGGAAGTGGATGCAAGCCATATCCATTTGCACCATGCACTGCTTTACCTTGCACAAAGTCCGAGACCCCAAGATGTTCCTTGAACTGTCAACCAGCATACTCAAAAGCCTACTCTAAGGACAAGTACTTCGGTTAGTGACATTTAGGTGTCCAACCAACTTTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>393 271 214 105 17</canonical_bands>
                <polymorphic_bands>393 271 214 122</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>345 144 105 91 65 58 58 58 33 17 15 11</canonical_bands>
                <polymorphic_bands>345 144 122 91 65 58 58 58 33 15 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAGCTCTCGTTAACTATGTCA</pcr_primer_p1>
		<pcr_primer_p2>ATCCACATGTTGCTTGATTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACAAGCTCTCGTTAACTATGTCAATTCTGCCCAATCCATGTTCACCGCTGAATATTCCAACGTCACCGAGGAATTCAAGAAGTTCCGTGTGATGGATGTCAAATACGCAGCTCCACACTCCCCCGAGCTCCGTGCTAGCCAAGTCAACACAGTCCTTCCTTCCATCCCAACCTACTTCGACGCTCGTACCCGTTGGCCTAACTGCAGATCCATCAAAATGATTCGAAATCAAGCAACATGTGGAT</canonical_amplicon>
		<polymorphic_amplicon>ACAAGCTCTCGTTAACTATGTCAATTCTGCCCAATCCATGTTCACCGCTGAATATTCCAACGTCACCGAGGAATTCAAGAAGTTCCGTGTGATGGATGTCAAATACGCAGCKCCACACTCCCCCGAGCTCCGTGCTAGCCAAGTCAACACAGTCCTTCCTTCCATCCCAACCTACTTCGACGCTCGTACCCGTTGGCCTAACTGCAGATCCATCAAAATGATTCGAAATCAAGCAACATGTGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26526</snp_id>
        <super_contig>c002400817.Contig2</super_contig>
        <contig_pos>54994</contig_pos>
        <strand>+</strand>
        <context>AGGGAGTTGT[C/T]ACTGGGGGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAGCAAGTCCACTGCAAGCTTTCAGATGGTGGAATAAAAAGGGAGTTGT</left_flank>
        <right_flank>ACTGGGGGAGACTACCGTGGAAGTGGATGCAAGCCATATCCATTTGCACC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCATATTCAGAAGATTCTTGTTCTGGCCGTACTGCTAGAAGCCACTTCTGCATTCGTCCCAATCACCGGACAAGCTCTCGTTAACTATGTCAATTCTGCCCAATCCATGTTCACCGCTGAATATTCCAACGTCACCGAGGAATTCAAGAAGTTCCGTGTGATGGATGTCAAATACGCAGCTCCACACTCCCCCGAGCTCCGTGCTAGCCAAGTCAACACAGTCCTTCCTTCCATCCCAACCTACTTCGACGCTCGTACCCGTTGGCCTAACTGCAGATCCATCAAAATGATTCGAAATCAAGCAACATGTGGATCCTGCTGGGCTTTTGGTGCTGCTGAAGTCATGTCAGACCGTATTTGCATTGCTAGTATGGGCACCAAACAACCAATTATCTCTCCGACCGATCTTCTTTCCTGTTGTGGAAATTTCTGTGGTTACGGATGTAAAGGAGCAAGTCCACTGCAAGCTTTCAGATGGTGGAATAAAAAGGGAGTTGTTACTGGGGGAGACTACCGTGGAAGTGGATGCAAGCCATATCCATTTGCACCATGCACTGCTTTACCTTGCACAAAGTCCGAGACCCCAAGATGTTCCTTGAACTGTCAACCAGCATACTCAAAAGCCTACTCTAAGGACAAGTACTTCGGTTAGTGACATTTAGGTGTCCAACCAACTTTTAAGCATATCATGCGTTTCAGGAACCCCCGCGTACATCGTTGGCATGGACGTTGCTGCCATCCAAACCGAAATATGACCAATGGACCAGTGGAGGCTGCTTTCATTGTCTACGACGACTTCAATCACTACAGAAGCGGAGTGTACAGGCACGTTGCCGGAAAGCTTGTCGGAGGACACGCTGTCAAAATTATCGGATGGGGAATTCAGAATGGAGCTCCATACTGGCTGATGGCCAACTCTTGGGGACCTTACTGGGGAGAAAACGGATTCTTCAAGATGCTTCGTGGAGTTGACGAATGCGGAATTGAATCAACCATCGT</canonical>
            <polymorphic>TTCATATTCAGAAGATTCTTGTTCTGGCCGTACTGCTAGAAGCCACTTCTGCATTCGTCCCAATCACCGGACAAGCTCTCGTTAACTATGTCAATTCTGCCCAATCCATGTTCACCGCTGAATATTCCAACGTCACCGAGGAATTCAAGAAGTTCCGTGTGATGGATGTCAAATACGCAGCTCCACACTCCCCCGAGCTCCGTGCTAGCCAAGTCAACACAGTCCTTCCTTCCATCCCAACCTACTTCGACGCTCGTACCCGTTGGCCTAACTGCAGATCCATCAAAATGATTCGAAATCAAGCAACATGTGGATCCTGCTGGGCTTTTGGTGCTGCTGAAGTCATGTCAGACCGTATTTGCATTGCTAGTATGGGCACCAAACAACCAATTATCTCTCCGACCGATCTTCTTTCCTGTTGTGGAAATTTCTGTGGTTACGGATGTAAAGGAGCAAGTCCACTGCAAGCTTTCAGATGGTGGAATAAAAAGGGAGTTGTYACTGGGGGAGACTACCGTGGAAGTGGATGCAAGCCATATCCATTTGCACCATGCACTGCTTTACCTTGCACAAAGTCCGAGACCCCAAGATGTTCCTTGAACTGTCAACCAGCATACTCAAAAGCCTACTCTAAGGACAAGTACTTCGGTTAGTGACATTTAGGTGTCCAACCAACTTTTAAGCATATCATGCGTTTCAGGAACCCCCGCGTACATCGTTGGCATGGACGTTGCTGCCATCCAAACCGAAATATGACCAATGGACCAGTGGAGGCTGCTTTCATTGTCTACGACGACTTCAATCACTACAGAAGCGGAGTGTACAGGCACGTTGCCGGAAAGCTTGTCGGAGGACACGCTGTCAAAATTATCGGATGGGGAATTCAGAATGGAGCTCCATACTGGCTGATGGCCAACTCTTGGGGACCTTACTGGGGAGAAAACGGATTCTTCAAGATGCTTCGTGGAGTTGACGAATGCGGAATTGAATCAACCATCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTATCTCTCCGACCGATCT</pcr_primer_p1>
		<pcr_primer_p2>GTCCTTAGAGTAGGCTTTTGAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTATCTCTCCGACCGATCTTCTTTCCTGTTGTGGAAATTTCTGTGGTTACGGATGTAAAGGAGCAAGTCCACTGCAAGCTTTCAGATGGTGGAATAAAAAGGGAGTTGTTACTGGGGGAGACTACCGTGGAAGTGGATGCAAGCCATATCCATTTGCACCATGCACTGCTTTACCTTGCACAAAGTCCGAGACCCCAAGATGTTCCTTGAACTGTCAACCAGCATACTCAAAAGCCTACTCTAAGGAC</canonical_amplicon>
		<polymorphic_amplicon>ATTATCTCTCCGACCGATCTTCTTTCCTGTTGTGGAAATTTCTGTGGTTACGGATGTAAAGGAGCAAGTCCACTGCAAGCTTTCAGATGGTGGAATAAAAAGGGAGTTGTYACTGGGGGAGACTACCGTGGAAGTGGATGCAAGCCATATCCATTTGCACCATGCACTGCTTTACCTTGCACAAAGTCCGAGACCCCAAGATGTTCCTTGAACTGTCAACCAGCATACTCAAAAGCCTACTCTAAGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26527</snp_id>
        <super_contig>c002400817.Contig2</super_contig>
        <contig_pos>112471</contig_pos>
        <strand>+</strand>
        <context>TTATGTTCTC[A/G]TTTTTTTGCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGCTCCCAATTTTTATGGAGATTTCGTGACCAGAAGACGTTATGTTCTC</left_flank>
        <right_flank>TTTTTTTGCGGAATTGCAAAAAGAAGAGAGCAATACATGGAAATTTTGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGGAATGAGAGGGGGGGGGGGAGACATAAGGAATCTCAAAGAAGAAGCGGGAACGCCTACATTAAAGAAGACGAGGGAAGAAATGTGTGAAGAGCGGGTTGATTAACAAATTGTGAAAAGGGCTTTTCATGGAGTTGCGGATGAGGAAAAGTGACAGAGAAAAGAAGAAGATGCTCGAGGGAGGAAAAGTGCGAAAATTATTATTGCGTGTGAGTGAAAAGAGGAGAAGAATGAATATATTAAAAAGTAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAATTCAAAAATTTTATCCTAAAACACGAATTGTTACTGGAAAATTGTCTTTTTCAAGCTTCATTTGGTAATTAGAGATATTTCGAGCCGAACTCACATTTTATGTATAAATTTGAATTGTTTTAACCCCAAAAAATATTTTCTGAGCTCCTCATTCTTCTGTCCCCTGCTCCCAATTTTTATGGAGATTTCGTGACCAGAAGACGTTATGTTCTCTTTTTTTTGCGGAATTGCAAAAAGAAGAGAGCAATACATGGAAATTTTGGGATGTCTCTCCTTCTTTTTTTGGAGTTCTTTGTATTTTTTTAAAACACCAAGTGGCTATGTGAAATGAGGGAAAAATGGGCTATACGAAAAAATCAGGGTCTCAGAATCTCAGGGTCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATATTAGAATCTTAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTCAGAATTTCAGAATCTTAGAATCTTAGAATTTCAGAATTTCAGAATCTTGAAATCTTAGAATCTAGGAATATTAGAATTTCAGAATCTTAGAATCTTGGAATTTTAGAATCTTAGAATCTTAGAATTTCAGAATCTCAGAATTTCAGAATTTCAGAATCTCAGAATTTCAGAATTCTGGAATCACAAAATTTCATAATCGCAGAATTTCAGCATTTCAGAATTTCAGAA</canonical>
            <polymorphic>AGTGGAATGAGAGGGGGGGGGGGAGACATAAGGAATCTCAAAGAAGAAGCGGGAACGCCTACATTAAAGAAGACGAGGGAAGAAATGTGTGAAGAGCGGGTTGATTAACAAATTGTGAAAAGGGCTTTTCATGGAGTTGCGGATGAGGAAAAGTGACAGAGAAAAGAAGAAGATGCTCGAGGGAGGAAAAGTGCGAAAATTATTATTGCGTGTGAGTGAAAAGAGGAGAAGAATGAATATATTAAAAAGTAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAATTCAAAAATTTTATCCTAAAACACGAATTGTTACTGGAAAATTGTCTTTTTCAAGCTTCATTTGGTAATTAGAGATATTTCGAGCCGAACTCACATTTTATGTATAAATTTGAATTGTTTTAACCCCAAAAAATATTTTCTGAGCTCCTCATTCTTCTGTCCCCTGCTCCCAATTTTTATGGAGATTTCGTGACCAGAAGACGTTATGTTCTCRTTTTTTTGCGGAATTGCAAAAAGAAGAGAGCAATACATGGAAATTTTGGGATGTCTCTCCTTCTTTTTTTGGAGTTCTTTGTATTTTTTTAAAACACCAAGTGGCTATGTGAAATGAGGGAAAAATGGGCTATACGAAAAAATCAGGGTCTCAGAATCTCAGGGTCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATATTAGAATCTTAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTCAGAATTTCAGAATCTTAGAATCTTAGAATTTCAGAATTTCAGAATCTTGAAATCTTAGAATCTAGGAATATTAGAATTTCAGAATCTTAGAATCTTGGAATTTTAGAATCTTAGAATCTTAGAATTTCAGAATCTCAGAATTTCAGAATTTCAGAATCTCAGAATTTCAGAATTCTGGAATCACAAAATTTCATAATCGCAGAATTTCAGCATTTCAGAATTTCAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTTACTGGAAAATTGTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGGAGAGACATCCCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGTTACTGGAAAATTGTCTTTTTCAAGCTTCATTTGGTAATTAGAGATATTTCGAGCCGAACTCACATTTTATGTATAAATTTGAATTGTTTTAACCCCAAAAAATATTTTCTGAGCTCCTCATTCTTCTGTCCCCTGCTCCCAATTTTTATGGAGATTTCGTGACCAGAAGACGTTATGTTCTCTTTTTTTTGCGGAATTGCAAAAAGAAGAGAGCAATACATGGAAATTTTGGGATGTCTCTCCTT</canonical_amplicon>
		<polymorphic_amplicon>TTGTTACTGGAAAATTGTCTTTTTCAAGCTTCATTTGGTAATTAGAGATATTTCGAGCCGAACTCACATTTTATGTATAAATTTGAATTGTTTTAACCCCAAAAAATATTTTCTGAGCTCCTCATTCTTCTGTCCCCTGCTCCCAATTTTTATGGAGATTTCGTGACCAGAAGACGTTATGTTCTCRTTTTTTTGCGGAATTGCAAAAAGAAGAGAGCAATACATGGAAATTTTGGGATGTCTCTCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26528</snp_id>
        <super_contig>c002400817.Contig2</super_contig>
        <contig_pos>112555</contig_pos>
        <strand>+</strand>
        <context>GTTCTTTGTA[G/T]TTTTTTARAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TACATGGAAATTTTGGGATGTCTCTCCTTCTTTTTTTGGAGTTCTTTGTA</left_flank>
        <right_flank>TTTTTTAAAACACCAAGTGGCTATGTGAAATGAGGGAAAAATGGGCTATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTGTGAAGAGCGGGTTGATTAACAAATTGTGAAAAGGGCTTTTCATGGAGTTGCGGATGAGGAAAAGTGACAGAGAAAAGAAGAAGATGCTCGAGGGAGGAAAAGTGCGAAAATTATTATTGCGTGTGAGTGAAAAGAGGAGAAGAATGAATATATTAAAAAGTAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAATTCAAAAATTTTATCCTAAAACACGAATTGTTACTGGAAAATTGTCTTTTTCAAGCTTCATTTGGTAATTAGAGATATTTCGAGCCGAACTCACATTTTATGTATAAATTTGAATTGTTTTAACCCCAAAAAATATTTTCTGAGCTCCTCATTCTTCTGTCCCCTGCTCCCAATTTTTATGGAGATTTCGTGACCAGAAGACGTTATGTTCTCTTTTTTTTGCGGAATTGCAAAAAGAAGAGAGCAATACATGGAAATTTTGGGATGTCTCTCCTTCTTTTTTTGGAGTTCTTTGTATTTTTTTAAAACACCAAGTGGCTATGTGAAATGAGGGAAAAATGGGCTATACGAAAAAATCAGGGTCTCAGAATCTCAGGGTCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATATTAGAATCTTAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTCAGAATTTCAGAATCTTAGAATCTTAGAATTTCAGAATTTCAGAATCTTGAAATCTTAGAATCTAGGAATATTAGAATTTCAGAATCTTAGAATCTTGGAATTTTAGAATCTTAGAATCTTAGAATTTCAGAATCTCAGAATTTCAGAATTTCAGAATCTCAGAATTTCAGAATTCTGGAATCACAAAATTTCATAATCGCAGAATTTCAGCATTTCAGAATTTCAGAATCTGAGAATTTCAGAATTTCGAAATTAAAGAATTACAGAATTTTCGGATTTCAGAATCTCAAAATTTCAAAATCTCAGAATCTC</canonical>
            <polymorphic>ATGTGTGAAGAGCGGGTTGATTAACAAATTGTGAAAAGGGCTTTTCATGGAGTTGCGGATGAGGAAAAGTGACAGAGAAAAGAAGAAGATGCTCGAGGGAGGAAAAGTGCGAAAATTATTATTGCGTGTGAGTGAAAAGAGGAGAAGAATGAATATATTAAAAAGTAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAATTCAAAAATTTTATCCTAAAACACGAATTGTTACTGGAAAATTGTCTTTTTCAAGCTTCATTTGGTAATTAGAGATATTTCGAGCCGAACTCACATTTTATGTATAAATTTGAATTGTTTTAACCCCAAAAAATATTTTCTGAGCTCCTCATTCTTCTGTCCCCTGCTCCCAATTTTTATGGAGATTTCGTGACCAGAAGACGTTATGTTCTCTTTTTTTTGCGGAATTGCAAAAAGAAGAGAGCAATACATGGAAATTTTGGGATGTCTCTCCTTCTTTTTTTGGAGTTCTTTGTAKTTTTTTAAAACACCAAGTGGCTATGTGAAATGAGGGAAAAATGGGCTATACGAAAAAATCAGGGTCTCAGAATCTCAGGGTCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATATTAGAATCTTAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTCAGAATTTCAGAATCTTAGAATCTTAGAATTTCAGAATTTCAGAATCTTGAAATCTTAGAATCTAGGAATATTAGAATTTCAGAATCTTAGAATCTTGGAATTTTAGAATCTTAGAATCTTAGAATTTCAGAATCTCAGAATTTCAGAATTTCAGAATCTCAGAATTTCAGAATTCTGGAATCACAAAATTTCATAATCGCAGAATTTCAGCATTTCAGAATTTCAGAATCTGAGAATTTCAGAATTTCGAAATTAAAGAATTACAGAATTTTCGGATTTCAGAATCTCAAAATTTCAAAATCTCAGAATCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATATTTTCTGAGCTCCTCATT</pcr_primer_p1>
		<pcr_primer_p2>GATTCTGAGACCCTGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AAATATTTTCTGAGCTCCTCATTCTTCTGTCCCCTGCTCCCAATTTTTATGGAGATTTCGTGACCAGAAGACGTTATGTTCTCTTTTTTTTGCGGAATTGCAAAAAGAAGAGAGCAATACATGGAAATTTTGGGATGTCTCTCCTTCTTTTTTTGGAGTTCTTTGTATTTTTTTAAAACACCAAGTGGCTATGTGAAATGAGGGAAAAATGGGCTATACGAAAAAATCAGGGTCTCAGAATC</canonical_amplicon>
		<polymorphic_amplicon>AAATATTTTCTGAGCTCCTCATTCTTCTGTCCCCTGCTCCCAATTTTTATGGAGATTTCGTGACCAGAAGACGTTATGTTCTCTTTTTTTTGCGGAATTGCAAAAAGAAGAGAGCAATACATGGAAATTTTGGGATGTCTCTCCTTCTTTTTTTGGAGTTCTTTGTAKTTTTTTAAAACACCAAGTGGCTATGTGAAATGAGGGAAAAATGGGCTATACGAAAAAATCAGGGTCTCAGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26529</snp_id>
        <super_contig>c002400817.Contig2</super_contig>
        <contig_pos>112563</contig_pos>
        <strand>+</strand>
        <context>TAKTTTTTTA[A/G]AACAYCAAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTTGGGATGTCTCTCCTTCTTTTTTTGGAGTTCTTTGTATTTTTTTA</left_flank>
        <right_flank>AACACCAAGTGGCTATGTGAAATGAGGGAAAAATGGGCTATACGAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGCGGGTTGATTAACAAATTGTGAAAAGGGCTTTTCATGGAGTTGCGGATGAGGAAAAGTGACAGAGAAAAGAAGAAGATGCTCGAGGGAGGAAAAGTGCGAAAATTATTATTGCGTGTGAGTGAAAAGAGGAGAAGAATGAATATATTAAAAAGTAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAATTCAAAAATTTTATCCTAAAACACGAATTGTTACTGGAAAATTGTCTTTTTCAAGCTTCATTTGGTAATTAGAGATATTTCGAGCCGAACTCACATTTTATGTATAAATTTGAATTGTTTTAACCCCAAAAAATATTTTCTGAGCTCCTCATTCTTCTGTCCCCTGCTCCCAATTTTTATGGAGATTTCGTGACCAGAAGACGTTATGTTCTCTTTTTTTTGCGGAATTGCAAAAAGAAGAGAGCAATACATGGAAATTTTGGGATGTCTCTCCTTCTTTTTTTGGAGTTCTTTGTATTTTTTTAAAACACCAAGTGGCTATGTGAAATGAGGGAAAAATGGGCTATACGAAAAAATCAGGGTCTCAGAATCTCAGGGTCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATATTAGAATCTTAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTCAGAATTTCAGAATCTTAGAATCTTAGAATTTCAGAATTTCAGAATCTTGAAATCTTAGAATCTAGGAATATTAGAATTTCAGAATCTTAGAATCTTGGAATTTTAGAATCTTAGAATCTTAGAATTTCAGAATCTCAGAATTTCAGAATTTCAGAATCTCAGAATTTCAGAATTCTGGAATCACAAAATTTCATAATCGCAGAATTTCAGCATTTCAGAATTTCAGAATCTGAGAATTTCAGAATTTCGAAATTAAAGAATTACAGAATTTTCGGATTTCAGAATCTCAAAATTTCAAAATCTCAGAATCTCAAAATCTC</canonical>
            <polymorphic>AGAGCGGGTTGATTAACAAATTGTGAAAAGGGCTTTTCATGGAGTTGCGGATGAGGAAAAGTGACAGAGAAAAGAAGAAGATGCTCGAGGGAGGAAAAGTGCGAAAATTATTATTGCGTGTGAGTGAAAAGAGGAGAAGAATGAATATATTAAAAAGTAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAATTCAAAAATTTTATCCTAAAACACGAATTGTTACTGGAAAATTGTCTTTTTCAAGCTTCATTTGGTAATTAGAGATATTTCGAGCCGAACTCACATTTTATGTATAAATTTGAATTGTTTTAACCCCAAAAAATATTTTCTGAGCTCCTCATTCTTCTGTCCCCTGCTCCCAATTTTTATGGAGATTTCGTGACCAGAAGACGTTATGTTCTCTTTTTTTTGCGGAATTGCAAAAAGAAGAGAGCAATACATGGAAATTTTGGGATGTCTCTCCTTCTTTTTTTGGAGTTCTTTGTATTTTTTTARAACACCAAGTGGCTATGTGAAATGAGGGAAAAATGGGCTATACGAAAAAATCAGGGTCTCAGAATCTCAGGGTCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATATTAGAATCTTAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTCAGAATTTCAGAATCTTAGAATCTTAGAATTTCAGAATTTCAGAATCTTGAAATCTTAGAATCTAGGAATATTAGAATTTCAGAATCTTAGAATCTTGGAATTTTAGAATCTTAGAATCTTAGAATTTCAGAATCTCAGAATTTCAGAATTTCAGAATCTCAGAATTTCAGAATTCTGGAATCACAAAATTTCATAATCGCAGAATTTCAGCATTTCAGAATTTCAGAATCTGAGAATTTCAGAATTTCGAAATTAAAGAATTACAGAATTTTCGGATTTCAGAATCTCAAAATTTCAAAATCTCAGAATCTCAAAATCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>436 183 164 137 67 13</canonical_bands>
                <polymorphic_bands>619 164 137 67 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATATTTTCTGAGCTCCTCATT</pcr_primer_p1>
		<pcr_primer_p2>GATTCTGAGACCCTGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AAATATTTTCTGAGCTCCTCATTCTTCTGTCCCCTGCTCCCAATTTTTATGGAGATTTCGTGACCAGAAGACGTTATGTTCTCTTTTTTTTGCGGAATTGCAAAAAGAAGAGAGCAATACATGGAAATTTTGGGATGTCTCTCCTTCTTTTTTTGGAGTTCTTTGTATTTTTTTAAAACACCAAGTGGCTATGTGAAATGAGGGAAAAATGGGCTATACGAAAAAATCAGGGTCTCAGAATC</canonical_amplicon>
		<polymorphic_amplicon>AAATATTTTCTGAGCTCCTCATTCTTCTGTCCCCTGCTCCCAATTTTTATGGAGATTTCGTGACCAGAAGACGTTATGTTCTCTTTTTTTTGCGGAATTGCAAAAAGAAGAGAGCAATACATGGAAATTTTGGGATGTCTCTCCTTCTTTTTTTGGAGTTCTTTGTATTTTTTTARAACACCAAGTGGCTATGTGAAATGAGGGAAAAATGGGCTATACGAAAAAATCAGGGTCTCAGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26530</snp_id>
        <super_contig>c002400817.Contig2</super_contig>
        <contig_pos>112568</contig_pos>
        <strand>+</strand>
        <context>TTTTARAACA[C/T]CAAGTGGCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGGATGTCTCTCCTTCTTTTTTTGGAGTTCTTTGTATTTTTTTAAAACA</left_flank>
        <right_flank>CAAGTGGCTATGTGAAATGAGGGAAAAATGGGCTATACGAAAAAATCAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGTTGATTAACAAATTGTGAAAAGGGCTTTTCATGGAGTTGCGGATGAGGAAAAGTGACAGAGAAAAGAAGAAGATGCTCGAGGGAGGAAAAGTGCGAAAATTATTATTGCGTGTGAGTGAAAAGAGGAGAAGAATGAATATATTAAAAAGTAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAATTCAAAAATTTTATCCTAAAACACGAATTGTTACTGGAAAATTGTCTTTTTCAAGCTTCATTTGGTAATTAGAGATATTTCGAGCCGAACTCACATTTTATGTATAAATTTGAATTGTTTTAACCCCAAAAAATATTTTCTGAGCTCCTCATTCTTCTGTCCCCTGCTCCCAATTTTTATGGAGATTTCGTGACCAGAAGACGTTATGTTCTCTTTTTTTTGCGGAATTGCAAAAAGAAGAGAGCAATACATGGAAATTTTGGGATGTCTCTCCTTCTTTTTTTGGAGTTCTTTGTATTTTTTTAAAACACCAAGTGGCTATGTGAAATGAGGGAAAAATGGGCTATACGAAAAAATCAGGGTCTCAGAATCTCAGGGTCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATATTAGAATCTTAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTCAGAATTTCAGAATCTTAGAATCTTAGAATTTCAGAATTTCAGAATCTTGAAATCTTAGAATCTAGGAATATTAGAATTTCAGAATCTTAGAATCTTGGAATTTTAGAATCTTAGAATCTTAGAATTTCAGAATCTCAGAATTTCAGAATTTCAGAATCTCAGAATTTCAGAATTCTGGAATCACAAAATTTCATAATCGCAGAATTTCAGCATTTCAGAATTTCAGAATCTGAGAATTTCAGAATTTCGAAATTAAAGAATTACAGAATTTTCGGATTTCAGAATCTCAAAATTTCAAAATCTCAGAATCTCAAAATCTCAGAAT</canonical>
            <polymorphic>GGGTTGATTAACAAATTGTGAAAAGGGCTTTTCATGGAGTTGCGGATGAGGAAAAGTGACAGAGAAAAGAAGAAGATGCTCGAGGGAGGAAAAGTGCGAAAATTATTATTGCGTGTGAGTGAAAAGAGGAGAAGAATGAATATATTAAAAAGTAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAATTCAAAAATTTTATCCTAAAACACGAATTGTTACTGGAAAATTGTCTTTTTCAAGCTTCATTTGGTAATTAGAGATATTTCGAGCCGAACTCACATTTTATGTATAAATTTGAATTGTTTTAACCCCAAAAAATATTTTCTGAGCTCCTCATTCTTCTGTCCCCTGCTCCCAATTTTTATGGAGATTTCGTGACCAGAAGACGTTATGTTCTCTTTTTTTTGCGGAATTGCAAAAAGAAGAGAGCAATACATGGAAATTTTGGGATGTCTCTCCTTCTTTTTTTGGAGTTCTTTGTATTTTTTTAAAACAYCAAGTGGCTATGTGAAATGAGGGAAAAATGGGCTATACGAAAAAATCAGGGTCTCAGAATCTCAGGGTCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATATTAGAATCTTAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTCAGAATTTCAGAATCTTAGAATCTTAGAATTTCAGAATTTCAGAATCTTGAAATCTTAGAATCTAGGAATATTAGAATTTCAGAATCTTAGAATCTTGGAATTTTAGAATCTTAGAATCTTAGAATTTCAGAATCTCAGAATTTCAGAATTTCAGAATCTCAGAATTTCAGAATTCTGGAATCACAAAATTTCATAATCGCAGAATTTCAGCATTTCAGAATTTCAGAATCTGAGAATTTCAGAATTTCGAAATTAAAGAATTACAGAATTTTCGGATTTCAGAATCTCAAAATTTCAAAATCTCAGAATCTCAAAATCTCAGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACNNNGTG</site>
                <isoschizomers>
                    <enzyme>AdeI</enzyme>
                    <enzyme>DraIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>344 142 118 99 91 70 38 38 20 19 8 7 4 2</canonical_bands>
                <polymorphic_bands>344 142 125 99 91 70 38 38 20 19 8 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATATTTTCTGAGCTCCTCATT</pcr_primer_p1>
		<pcr_primer_p2>GATTCTGAGACCCTGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AAATATTTTCTGAGCTCCTCATTCTTCTGTCCCCTGCTCCCAATTTTTATGGAGATTTCGTGACCAGAAGACGTTATGTTCTCTTTTTTTTGCGGAATTGCAAAAAGAAGAGAGCAATACATGGAAATTTTGGGATGTCTCTCCTTCTTTTTTTGGAGTTCTTTGTATTTTTTTAAAACACCAAGTGGCTATGTGAAATGAGGGAAAAATGGGCTATACGAAAAAATCAGGGTCTCAGAATC</canonical_amplicon>
		<polymorphic_amplicon>AAATATTTTCTGAGCTCCTCATTCTTCTGTCCCCTGCTCCCAATTTTTATGGAGATTTCGTGACCAGAAGACGTTATGTTCTCTTTTTTTTGCGGAATTGCAAAAAGAAGAGAGCAATACATGGAAATTTTGGGATGTCTCTCCTTCTTTTTTTGGAGTTCTTTGTATTTTTTTAAAACAYCAAGTGGCTATGTGAAATGAGGGAAAAATGGGCTATACGAAAAAATCAGGGTCTCAGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26531</snp_id>
        <super_contig>c002400817.Contig2</super_contig>
        <contig_pos>112601</contig_pos>
        <strand>+</strand>
        <context>GAAAAATGGG[C/G]TWTACGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGTATTTTTTTAAAACACCAAGTGGCTATGTGAAATGAGGGAAAAATGGG</left_flank>
        <right_flank>TATACGAAAAAATCAGGGTCTCAGAATCTCAGGGTCTCAGAATCTTAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGAGTTGCGGATGAGGAAAAGTGACAGAGAAAAGAAGAAGATGCTCGAGGGAGGAAAAGTGCGAAAATTATTATTGCGTGTGAGTGAAAAGAGGAGAAGAATGAATATATTAAAAAGTAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAATTCAAAAATTTTATCCTAAAACACGAATTGTTACTGGAAAATTGTCTTTTTCAAGCTTCATTTGGTAATTAGAGATATTTCGAGCCGAACTCACATTTTATGTATAAATTTGAATTGTTTTAACCCCAAAAAATATTTTCTGAGCTCCTCATTCTTCTGTCCCCTGCTCCCAATTTTTATGGAGATTTCGTGACCAGAAGACGTTATGTTCTCTTTTTTTTGCGGAATTGCAAAAAGAAGAGAGCAATACATGGAAATTTTGGGATGTCTCTCCTTCTTTTTTTGGAGTTCTTTGTATTTTTTTAAAACACCAAGTGGCTATGTGAAATGAGGGAAAAATGGGCTATACGAAAAAATCAGGGTCTCAGAATCTCAGGGTCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATATTAGAATCTTAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTCAGAATTTCAGAATCTTAGAATCTTAGAATTTCAGAATTTCAGAATCTTGAAATCTTAGAATCTAGGAATATTAGAATTTCAGAATCTTAGAATCTTGGAATTTTAGAATCTTAGAATCTTAGAATTTCAGAATCTCAGAATTTCAGAATTTCAGAATCTCAGAATTTCAGAATTCTGGAATCACAAAATTTCATAATCGCAGAATTTCAGCATTTCAGAATTTCAGAATCTGAGAATTTCAGAATTTCGAAATTAAAGAATTACAGAATTTTCGGATTTCAGAATCTCAAAATTTCAAAATCTCAGAATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTTAGAATCTTAGAATC</canonical>
            <polymorphic>ATGGAGTTGCGGATGAGGAAAAGTGACAGAGAAAAGAAGAAGATGCTCGAGGGAGGAAAAGTGCGAAAATTATTATTGCGTGTGAGTGAAAAGAGGAGAAGAATGAATATATTAAAAAGTAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAATTCAAAAATTTTATCCTAAAACACGAATTGTTACTGGAAAATTGTCTTTTTCAAGCTTCATTTGGTAATTAGAGATATTTCGAGCCGAACTCACATTTTATGTATAAATTTGAATTGTTTTAACCCCAAAAAATATTTTCTGAGCTCCTCATTCTTCTGTCCCCTGCTCCCAATTTTTATGGAGATTTCGTGACCAGAAGACGTTATGTTCTCTTTTTTTTGCGGAATTGCAAAAAGAAGAGAGCAATACATGGAAATTTTGGGATGTCTCTCCTTCTTTTTTTGGAGTTCTTTGTATTTTTTTAAAACACCAAGTGGCTATGTGAAATGAGGGAAAAATGGGSTATACGAAAAAATCAGGGTCTCAGAATCTCAGGGTCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATATTAGAATCTTAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTCAGAATTTCAGAATCTTAGAATCTTAGAATTTCAGAATTTCAGAATCTTGAAATCTTAGAATCTAGGAATATTAGAATTTCAGAATCTTAGAATCTTGGAATTTTAGAATCTTAGAATCTTAGAATTTCAGAATCTCAGAATTTCAGAATTTCAGAATCTCAGAATTTCAGAATTCTGGAATCACAAAATTTCATAATCGCAGAATTTCAGCATTTCAGAATTTCAGAATCTGAGAATTTCAGAATTTCGAAATTAAAGAATTACAGAATTTTCGGATTTCAGAATCTCAAAATTTCAAAATCTCAGAATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTTAGAATCTTAGAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>501 211 174 60 29 25</canonical_bands>
                <polymorphic_bands>526 211 174 60 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGATGTCTCTCCTTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTAAGACAATAAATTTGGTTACGA</pcr_primer_p2>
		<pcr_amplicon_size>698</pcr_amplicon_size>
		<canonical_amplicon>GGGATGTCTCTCCTTCTTTTTTTGGAGTTCTTTGTATTTTTTTAAAACACCAAGTGGCTATGTGAAATGAGGGAAAAATGGGCTATACGAAAAAATCAGGGTCTCA</canonical_amplicon>
		<polymorphic_amplicon>GGGATGTCTCTCCTTCTTTTTTTGGAGTTCTTTGTATTTTTTTAAAACACCAAGTGGCTATGTGAAATGAGGGAAAAATGGGSTATACGAAAAAATCAGGGTCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26532</snp_id>
        <super_contig>c002400817.Contig2</super_contig>
        <contig_pos>112603</contig_pos>
        <strand>+</strand>
        <context>AAAATGGGST[A/T]TACGAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATTTTTTTAAAACACCAAGTGGCTATGTGAAATGAGGGAAAAATGGGCT</left_flank>
        <right_flank>TACGAAAAAATCAGGGTCTCAGAATCTCAGGGTCTCAGAATCTTAGAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGTTGCGGATGAGGAAAAGTGACAGAGAAAAGAAGAAGATGCTCGAGGGAGGAAAAGTGCGAAAATTATTATTGCGTGTGAGTGAAAAGAGGAGAAGAATGAATATATTAAAAAGTAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAATTCAAAAATTTTATCCTAAAACACGAATTGTTACTGGAAAATTGTCTTTTTCAAGCTTCATTTGGTAATTAGAGATATTTCGAGCCGAACTCACATTTTATGTATAAATTTGAATTGTTTTAACCCCAAAAAATATTTTCTGAGCTCCTCATTCTTCTGTCCCCTGCTCCCAATTTTTATGGAGATTTCGTGACCAGAAGACGTTATGTTCTCTTTTTTTTGCGGAATTGCAAAAAGAAGAGAGCAATACATGGAAATTTTGGGATGTCTCTCCTTCTTTTTTTGGAGTTCTTTGTATTTTTTTAAAACACCAAGTGGCTATGTGAAATGAGGGAAAAATGGGCTATACGAAAAAATCAGGGTCTCAGAATCTCAGGGTCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATATTAGAATCTTAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTCAGAATTTCAGAATCTTAGAATCTTAGAATTTCAGAATTTCAGAATCTTGAAATCTTAGAATCTAGGAATATTAGAATTTCAGAATCTTAGAATCTTGGAATTTTAGAATCTTAGAATCTTAGAATTTCAGAATCTCAGAATTTCAGAATTTCAGAATCTCAGAATTTCAGAATTCTGGAATCACAAAATTTCATAATCGCAGAATTTCAGCATTTCAGAATTTCAGAATCTGAGAATTTCAGAATTTCGAAATTAAAGAATTACAGAATTTTCGGATTTCAGAATCTCAAAATTTCAAAATCTCAGAATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTTAGAATCTTAGAATCTC</canonical>
            <polymorphic>GGAGTTGCGGATGAGGAAAAGTGACAGAGAAAAGAAGAAGATGCTCGAGGGAGGAAAAGTGCGAAAATTATTATTGCGTGTGAGTGAAAAGAGGAGAAGAATGAATATATTAAAAAGTAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAATTCAAAAATTTTATCCTAAAACACGAATTGTTACTGGAAAATTGTCTTTTTCAAGCTTCATTTGGTAATTAGAGATATTTCGAGCCGAACTCACATTTTATGTATAAATTTGAATTGTTTTAACCCCAAAAAATATTTTCTGAGCTCCTCATTCTTCTGTCCCCTGCTCCCAATTTTTATGGAGATTTCGTGACCAGAAGACGTTATGTTCTCTTTTTTTTGCGGAATTGCAAAAAGAAGAGAGCAATACATGGAAATTTTGGGATGTCTCTCCTTCTTTTTTTGGAGTTCTTTGTATTTTTTTAAAACACCAAGTGGCTATGTGAAATGAGGGAAAAATGGGCTWTACGAAAAAATCAGGGTCTCAGAATCTCAGGGTCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATATTAGAATCTTAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTCAGAATTTCAGAATCTTAGAATCTTAGAATTTCAGAATTTCAGAATCTTGAAATCTTAGAATCTAGGAATATTAGAATTTCAGAATCTTAGAATCTTGGAATTTTAGAATCTTAGAATCTTAGAATTTCAGAATCTCAGAATTTCAGAATTTCAGAATCTCAGAATTTCAGAATTCTGGAATCACAAAATTTCATAATCGCAGAATTTCAGCATTTCAGAATTTCAGAATCTGAGAATTTCAGAATTTCGAAATTAAAGAATTACAGAATTTTCGGATTTCAGAATCTCAAAATTTCAAAATCTCAGAATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTTAGAATCTTAGAATCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGATGTCTCTCCTTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTAAGACAATAAATTTGGTTACGA</pcr_primer_p2>
		<pcr_amplicon_size>698</pcr_amplicon_size>
		<canonical_amplicon>GGGATGTCTCTCCTTCTTTTTTTGGAGTTCTTTGTATTTTTTTAAAACACCAAGTGGCTATGTGAAATGAGGGAAAAATGGGCTATACGAAAAAATCAGGGTCTCAGA</canonical_amplicon>
		<polymorphic_amplicon>GGGATGTCTCTCCTTCTTTTTTTGGAGTTCTTTGTATTTTTTTAAAACACCAAGTGGCTATGTGAAATGAGGGAAAAATGGGCTWTACGAAAAAATCAGGGTCTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26533</snp_id>
        <super_contig>c002400817.Contig2</super_contig>
        <contig_pos>170272</contig_pos>
        <strand>+</strand>
        <context>TAACAAAAAA[A/T]GAAGCAGTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTAAGTTGGTCAGTTCAAACAGTATTAAAATTTAGTTAACTAACAAAAAA</left_flank>
        <right_flank>GAAGCAGTTCATGTTTTATATTTACACCTTTACACCTTTTAAACCTTTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATACTTTTTTAGGGTACTGTAGCTGTGAAAATATACAAAAACAGTACGAATTTAGAATTTAAAAAATTGGGTCAAATAGAACTTCGGAAGATCACCACTAATCAATCGATATCTTTTGAACTATTACAGCTAGAGCAAAAGTGTCAACTTACGAAATATAGAAAATCTTATTTTCTATTTTTTTGTGGTTTTAAAGTTGCTGTAATCTTTTTGGTTTCCAAGTTATGCTCCTTTAAAGAAGGGTGTACATTTTGATCCGTCACCTAGTAGTGGTAAACCTGTCTCGCCAACTATGGTAATATTAAAGTTTTGGAATGGGTTAAAGTGTGAAATTCAATTTTCTACACTTTTGTAGTTTACGATTTTTAGGTATCTCAATTCGTGACTGAGCTATGCGCCTTTAAACACTTCTTGGAGACTTGGTGATAGGGATAACTTCCAACGCTTGTAAGTTGGTCAGTTCAAACAGTATTAAAATTTAGTTAACTAACAAAAAAAGAAGCAGTTCATGTTTTATATTTACACCTTTACACCTTTTAAACCTTTTTCATCTCCTCATTCGTTTTTGAGATATGCGCCTTTAAAGGTGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTTCTCGCATTTATGTATGCAATCGGGCAGCGGATTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCACCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTTCATGTCCCCCCACCTTTAAAGAAAGAAATGTTCACTTTTGATAGAAATATCTTCAAACGCCTGTAACTCGGTTAGTTTAAACGTTATAAAAATTTGACCAACAAACAAAAGATGAAAAAGTTTATGGTCTACATTTTTGTAATTTACAACTTTTTGATCCCT</canonical>
            <polymorphic>AAATACTTTTTTAGGGTACTGTAGCTGTGAAAATATACAAAAACAGTACGAATTTAGAATTTAAAAAATTGGGTCAAATAGAACTTCGGAAGATCACCACTAATCAATCGATATCTTTTGAACTATTACAGCTAGAGCAAAAGTGTCAACTTACGAAATATAGAAAATCTTATTTTCTATTTTTTTGTGGTTTTAAAGTTGCTGTAATCTTTTTGGTTTCCAAGTTATGCTCCTTTAAAGAAGGGTGTACATTTTGATCCGTCACCTAGTAGTGGTAAACCTGTCTCGCCAACTATGGTAATATTAAAGTTTTGGAATGGGTTAAAGTGTGAAATTCAATTTTCTACACTTTTGTAGTTTACGATTTTTAGGTATCTCAATTCGTGACTGAGCTATGCGCCTTTAAACACTTCTTGGAGACTTGGTGATAGGGATAACTTCCAACGCTTGTAAGTTGGTCAGTTCAAACAGTATTAAAATTTAGTTAACTAACAAAAAAWGAAGCAGTTCATGTTTTATATTTACACCTTTACACCTTTTAAACCTTTTTCATCTCCTCATTCGTTTTTGAGATATGCGCCTTTAAAGGTGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTTCTCGCATTTATGTATGCAATCGGGCAGCGGATTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCACCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTTCATGTCCCCCCACCTTTAAAGAAAGAAATGTTCACTTTTGATAGAAATATCTTCAAACGCCTGTAACTCGGTTAGTTTAAACGTTATAAAAATTTGACCAACAAACAAAAGATGAAAAAGTTTATGGTCTACATTTTTGTAATTTACAACTTTTTGATCCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGACTTGGTGATAGGGATAACTT</pcr_primer_p1>
		<pcr_primer_p2>CAGAGTGACATTAAGCGTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>AGACTTGGTGATAGGGATAACTTCCAACGCTTGTAAGTTGGTCAGTTCAAACAGTATTAAAATTTAGTTAACTAACAAAAAAAGAAGCAGTTCATGTTTTATATTTACACCTTTACACCTTTTAAACCTTTTTCATCTCCTCATTCGTTTTTGAGATATGCGCCTTTAAAGGTGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTG</canonical_amplicon>
		<polymorphic_amplicon>AGACTTGGTGATAGGGATAACTTCCAACGCTTGTAAGTTGGTCAGTTCAAACAGTATTAAAATTTAGTTAACTAACAAAAAAWGAAGCAGTTCATGTTTTATATTTACACCTTTACACCTTTTAAACCTTTTTCATCTCCTCATTCGTTTTTGAGATATGCGCCTTTAAAGGTGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26534</snp_id>
        <super_contig>c002400817.Contig2</super_contig>
        <contig_pos>170314</contig_pos>
        <strand></strand>
        <context>acacctttta[A/C]acctttttca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACAAAAAAAGAAGCAGTTCATGTTTTATATTTACACCTTTACACCTTTTA</left_flank>
        <right_flank>ACCTTTTTCATCTCCTCATTCGTTTTTGAGATATGCGCCTTTAAAGGTGG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGTACGAATTTAGAATTTAAAAAATTGGGTCAAATAGAACTTCGGAAGATCACCACTAATCAATCGATATCTTTTGAACTATTACAGCTAGAGCAAAAGTGTCAACTTACGAAATATAGAAAATCTTATTTTCTATTTTTTTGTGGTTTTAAAGTTGCTGTAATCTTTTTGGTTTCCAAGTTATGCTCCTTTAAAGAAGGGTGTACATTTTGATCCGTCACCTAGTAGTGGTAAACCTGTCTCGCCAACTATGGTAATATTAAAGTTTTGGAATGGGTTAAAGTGTGAAATTCAATTTTCTACACTTTTGTAGTTTACGATTTTTAGGTATCTCAATTCGTGACTGAGCTATGCGCCTTTAAACACTTCTTGGAGACTTGGTGATAGGGATAACTTCCAACGCTTGTAAGTTGGTCAGTTCAAACAGTATTAAAATTTAGTTAACTAACAAAAAAAGAAGCAGTTCATGTTTTATATTTACACCTTTACACCTTTTAAACCTTTTTCATCTCCTCATTCGTTTTTGAGATATGCGCCTTTAAAGGTGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTTCTCGCATTTATGTATGCAATCGGGCAGCGGATTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCACCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTTCATGTCCCCCCACCTTTAAAGAAAGAAATGTTCACTTTTGATAGAAATATCTTCAAACGCCTGTAACTCGGTTAGTTTAAACGTTATAAAAATTTGACCAACAAACAAAAGATGAAAAAGTTTATGGTCTACATTTTTGTAATTTACAACTTTTTGATCCCTCAATTCGTTCCGGAGTTATGCGCCTTTAAAGAAGCGACCGTT</canonical>
            <polymorphic>ACAGTACGAATTTAGAATTTAAAAAATTGGGTCAAATAGAACTTCGGAAGATCACCACTAATCAATCGATATCTTTTGAACTATTACAGCTAGAGCAAAAGTGTCAACTTACGAAATATAGAAAATCTTATTTTCTATTTTTTTGTGGTTTTAAAGTTGCTGTAATCTTTTTGGTTTCCAAGTTATGCTCCTTTAAAGAAGGGTGTACATTTTGATCCGTCACCTAGTAGTGGTAAACCTGTCTCGCCAACTATGGTAATATTAAAGTTTTGGAATGGGTTAAAGTGTGAAATTCAATTTTCTACACTTTTGTAGTTTACGATTTTTAGGTATCTCAATTCGTGACTGAGCTATGCGCCTTTAAACACTTCTTGGAGACTTGGTGATAGGGATAACTTCCAACGCTTGTAAGTTGGTCAGTTCAAACAGTATTAAAATTTAGTTAACTAACAAAAAAAGAAGCAGTTCATGTTTTATATTTACACCTTTACACCTTTTAMACCTTTTTCATCTCCTCATTCGTTTTTGAGATATGCGCCTTTAAAGGTGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTTCTCGCATTTATGTATGCAATCGGGCAGCGGATTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCACCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTTCATGTCCCCCCACCTTTAAAGAAAGAAATGTTCACTTTTGATAGAAATATCTTCAAACGCCTGTAACTCGGTTAGTTTAAACGTTATAAAAATTTGACCAACAAACAAAAGATGAAAAAGTTTATGGTCTACATTTTTGTAATTTACAACTTTTTGATCCCTCAATTCGTTCCGGAGTTATGCGCCTTTAAAGAAGCGACCGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>271 168 136 132 111 61 44 42 20 15</canonical_bands>
                <polymorphic_bands>271 180 168 132 111 61 42 20 15</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>193 132 111 81 78 71 69 61 54 44 42 19 18 16 11</canonical_bands>
                <polymorphic_bands>193 132 111 98 81 78 71 69 61 42 19 18 16 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTGGTCAGTTCAAACAGTATT</pcr_primer_p1>
		<pcr_primer_p2>ATACATAAATGCGAGAACGAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGTTGGTCAGTTCAAACAGTATTAAAATTTAGTTAACTAACAAAAAAAGAAGCAGTTCATGTTTTATATTTACACCTTTACACCTTTTAAACCTTTTTCATCTCCTCATTCGTTTTTGAGATATGCGCCTTTAAAGGTGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTTCTCGCATTTATGTAT</canonical_amplicon>
		<polymorphic_amplicon>AGTTGGTCAGTTCAAACAGTATTAAAATTTAGTTAACTAACAAAAAAAGAAGCAGTTCATGTTTTATATTTACACCTTTACACCTTTTAMACCTTTTTCATCTCCTCATTCGTTTTTGAGATATGCGCCTTTAAAGGTGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTTCTCGCATTTATGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26535</snp_id>
        <super_contig>c002400855.Contig3</super_contig>
        <contig_pos>4473</contig_pos>
        <strand>+</strand>
        <context>GACGAATTTC[C/G]ATTTTTGGCG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCATAGCTCCTAGGCGAGACAGTTCCAGAAACCGTAACTCGACGAATTTC</left_flank>
        <right_flank>ATTTTTGGCGTTTTTCATTAATATATTTGAAATTAGCTCTAAAGTTCCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGCGGTTACATCATGAAGTACTAAAAACAAGGTGCGGCGAGTCGCTCATATTTCTACATCACATTTGATGTTCTAACTAGGTAAAACTAAGGTATTCAAGGTTTTCCTTCTAAATGTAAACTAGAAAAATAATCATTATTCGCAAAAACTAGCAGTCATAGTCATCAGGTTCTCTGTTTTCAAGAAATTGAGTCTAAACAAAGTCTCAATACTTTTCAGCCACCCTGTATAGATTGGGGGAAGGGAAAGAACCAGACAGCAGTGTGAACACAGGTAAAGGGGGACTGCCGAAAAACTGCTAAATGACAGCTGAAGAGGCGCAAACTGGCGAATGACTGCTAGTTGGCAGCCGAAGGAGAACTGACGGGCCGTTGACGGTCCGTCGACGGACCGTCGGTACCGATTGGAAAGTTACACCACGAATTTTTTGGCCTTCCTAATTCCTAACCATAGCTCCTAGGCGAGACAGTTCCAGAAACCGTAACTCGACGAATTTCGATTTTTGGCGTTTTTCATTAATATATTTGAAATTAGCTCTAAAGTTCCTTTAAAAGTATAAACAAGCCATGTTTTTCAAAAAATTGAAAATCTGAAAAATCTGAAAATTTTCAAAAATTTGGGCCAAAAATTTTTTAACGAATTTTCTGTCTGAAAACAAGTTTTTAGGGGTTTACAGACACGCTGATTCCAAAAATCACACTTATTCTTATATCGCCTCTAAACCAAGCCATGTTTTTCAAAAAAATTGAAAATCTGAAAAATCTGAAAATTTTCAAAAATTTGGGCTCAAAAATATTTTTTGGAATTATTTGTCTGAAAATTTGTTTTCAGGGGTTTACAAATCACATGTTCATTTGTGATGGAAACTTCTCAAAACCTCAAAAAATACATTCCGAAACTTTTTGGACTTCCTAAGGCCTAATAATGGCTTCTAACAGTACGCGAAAGGGTTCAAAGTACCGTATCTCGACGAATTTTGATTTTTAGAAGTTATCGTT</canonical>
            <polymorphic>TCTGCGGTTACATCATGAAGTACTAAAAACAAGGTGCGGCGAGTCGCTCATATTTCTACATCACATTTGATGTTCTAACTAGGTAAAACTAAGGTATTCAAGGTTTTCCTTCTAAATGTAAACTAGAAAAATAATCATTATTCGCAAAAACTAGCAGTCATAGTCATCAGGTTCTCTGTTTTCAAGAAATTGAGTCTAAACAAAGTCTCAATACTTTTCAGCCACCCTGTATAGATTGGGGGAAGGGAAAGAACCAGACAGCAGTGTGAACACAGGTAAAGGGGGACTGCCGAAAAACTGCTAAATGACAGCTGAAGAGGCGCAAACTGGCGAATGACTGCTAGTTGGCAGCCGAAGGAGAACTGACGGGCCGTTGACGGTCCGTCGACGGACCGTCGGTACCGATTGGAAAGTTACACCACGAATTTTTTGGCCTTCCTAATTCCTAACCATAGCTCCTAGGCGAGACAGTTCCAGAAACCGTAACTCGACGAATTTCSATTTTTGGCGTTTTTCATTAATATATTTGAAATTAGCTCTAAAGTTCCTTTAAAAGTATAAACAAGCCATGTTTTTCAAAAAATTGAAAATCTGAAAAATCTGAAAATTTTCAAAAATTTGGGCCAAAAATTTTTTAACGAATTTTCTGTCTGAAAACAAGTTTTTAGGGGTTTACAGACACGCTGATTCCAAAAATCACACTTATTCTTATATCGCCTCTAAACCAAGCCATGTTTTTCAAAAAAATTGAAAATCTGAAAAATCTGAAAATTTTCAAAAATTTGGGCTCAAAAATATTTTTTGGAATTATTTGTCTGAAAATTTGTTTTCAGGGGTTTACAAATCACATGTTCATTTGTGATGGAAACTTCTCAAAACCTCAAAAAATACATTCCGAAACTTTTTGGACTTCCTAAGGCCTAATAATGGCTTCTAACAGTACGCGAAAGGGTTCAAAGTACCGTATCTCGACGAATTTTGATTTTTAGAAGTTATCGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>471 386 103 30 10</canonical_bands>
                <polymorphic_bands>481 386 103 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCTAATTCCTAACCATAGCTC</pcr_primer_p1>
		<pcr_primer_p2>GTGTCTGTAAACCCCTAAAAACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTCCTAATTCCTAACCATAGCTCCTAGGCGAGACAGTTCCAGAAACCGTAACTCGACGAATTTCGATTTTTGGCGTTTTTCATTAATATATTTGAAATTAGCTCTAAAGTTCCTTTAAAAGTATAAACAAGCCATGTTTTTCAAAAAATTGAAAATCTGAAAAATCTGAAAATTTTCAAAAATTTGGGCCAAAAATTTTTTAACGAATTTTCTGTCTGAAAACAAGTTTTTAGGGGTTTACAGACAC</canonical_amplicon>
		<polymorphic_amplicon>TTCCTAATTCCTAACCATAGCTCCTAGGCGAGACAGTTCCAGAAACCGTAACTCGACGAATTTCSATTTTTGGCGTTTTTCATTAATATATTTGAAATTAGCTCTAAAGTTCCTTTAAAAGTATAAACAAGCCATGTTTTTCAAAAAATTGAAAATCTGAAAAATCTGAAAATTTTCAAAAATTTGGGCCAAAAATTTTTTAACGAATTTTCTGTCTGAAAACAAGTTTTTAGGGGTTTACAGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26536</snp_id>
        <super_contig>c002400855.Contig3</super_contig>
        <contig_pos>4511</contig_pos>
        <strand>+</strand>
        <context>TGAAATTAGC[G/T]CTAAAKTTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGACGAATTTCGATTTTTGGCGTTTTTCATTAATATATTTGAAATTAGC</left_flank>
        <right_flank>CTAAAGTTCCTTTAAAAGTATAAACAAGCCATGTTTTTCAAAAAATTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGAGTCGCTCATATTTCTACATCACATTTGATGTTCTAACTAGGTAAAACTAAGGTATTCAAGGTTTTCCTTCTAAATGTAAACTAGAAAAATAATCATTATTCGCAAAAACTAGCAGTCATAGTCATCAGGTTCTCTGTTTTCAAGAAATTGAGTCTAAACAAAGTCTCAATACTTTTCAGCCACCCTGTATAGATTGGGGGAAGGGAAAGAACCAGACAGCAGTGTGAACACAGGTAAAGGGGGACTGCCGAAAAACTGCTAAATGACAGCTGAAGAGGCGCAAACTGGCGAATGACTGCTAGTTGGCAGCCGAAGGAGAACTGACGGGCCGTTGACGGTCCGTCGACGGACCGTCGGTACCGATTGGAAAGTTACACCACGAATTTTTTGGCCTTCCTAATTCCTAACCATAGCTCCTAGGCGAGACAGTTCCAGAAACCGTAACTCGACGAATTTCGATTTTTGGCGTTTTTCATTAATATATTTGAAATTAGCTCTAAAGTTCCTTTAAAAGTATAAACAAGCCATGTTTTTCAAAAAATTGAAAATCTGAAAAATCTGAAAATTTTCAAAAATTTGGGCCAAAAATTTTTTAACGAATTTTCTGTCTGAAAACAAGTTTTTAGGGGTTTACAGACACGCTGATTCCAAAAATCACACTTATTCTTATATCGCCTCTAAACCAAGCCATGTTTTTCAAAAAAATTGAAAATCTGAAAAATCTGAAAATTTTCAAAAATTTGGGCTCAAAAATATTTTTTGGAATTATTTGTCTGAAAATTTGTTTTCAGGGGTTTACAAATCACATGTTCATTTGTGATGGAAACTTCTCAAAACCTCAAAAAATACATTCCGAAACTTTTTGGACTTCCTAAGGCCTAATAATGGCTTCTAACAGTACGCGAAAGGGTTCAAAGTACCGTATCTCGACGAATTTTGATTTTTAGAAGTTATCGTTCACAAATTCTATATCAGCGCAAAATTCCCTTCAAAATG</canonical>
            <polymorphic>GCGAGTCGCTCATATTTCTACATCACATTTGATGTTCTAACTAGGTAAAACTAAGGTATTCAAGGTTTTCCTTCTAAATGTAAACTAGAAAAATAATCATTATTCGCAAAAACTAGCAGTCATAGTCATCAGGTTCTCTGTTTTCAAGAAATTGAGTCTAAACAAAGTCTCAATACTTTTCAGCCACCCTGTATAGATTGGGGGAAGGGAAAGAACCAGACAGCAGTGTGAACACAGGTAAAGGGGGACTGCCGAAAAACTGCTAAATGACAGCTGAAGAGGCGCAAACTGGCGAATGACTGCTAGTTGGCAGCCGAAGGAGAACTGACGGGCCGTTGACGGTCCGTCGACGGACCGTCGGTACCGATTGGAAAGTTACACCACGAATTTTTTGGCCTTCCTAATTCCTAACCATAGCTCCTAGGCGAGACAGTTCCAGAAACCGTAACTCGACGAATTTCGATTTTTGGCGTTTTTCATTAATATATTTGAAATTAGCKCTAAAGTTCCTTTAAAAGTATAAACAAGCCATGTTTTTCAAAAAATTGAAAATCTGAAAAATCTGAAAATTTTCAAAAATTTGGGCCAAAAATTTTTTAACGAATTTTCTGTCTGAAAACAAGTTTTTAGGGGTTTACAGACACGCTGATTCCAAAAATCACACTTATTCTTATATCGCCTCTAAACCAAGCCATGTTTTTCAAAAAAATTGAAAATCTGAAAAATCTGAAAATTTTCAAAAATTTGGGCTCAAAAATATTTTTTGGAATTATTTGTCTGAAAATTTGTTTTCAGGGGTTTACAAATCACATGTTCATTTGTGATGGAAACTTCTCAAAACCTCAAAAAATACATTCCGAAACTTTTTGGACTTCCTAAGGCCTAATAATGGCTTCTAACAGTACGCGAAAGGGTTCAAAGTACCGTATCTCGACGAATTTTGATTTTTAGAAGTTATCGTTCACAAATTCTATATCAGCGCAAAATTCCCTTCAAAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>502 273 144 81</canonical_bands>
                <polymorphic_bands>583 273 144</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>183 132 108 106 90 81 63 58 57 40 30 22 19 11</canonical_bands>
                <polymorphic_bands>183 132 111 108 106 90 63 58 57 40 22 19 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCTAATTCCTAACCATAGCTC</pcr_primer_p1>
		<pcr_primer_p2>GTGTCTGTAAACCCCTAAAAACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTCCTAATTCCTAACCATAGCTCCTAGGCGAGACAGTTCCAGAAACCGTAACTCGACGAATTTCGATTTTTGGCGTTTTTCATTAATATATTTGAAATTAGCTCTAAAGTTCCTTTAAAAGTATAAACAAGCCATGTTTTTCAAAAAATTGAAAATCTGAAAAATCTGAAAATTTTCAAAAATTTGGGCCAAAAATTTTTTAACGAATTTTCTGTCTGAAAACAAGTTTTTAGGGGTTTACAGACAC</canonical_amplicon>
		<polymorphic_amplicon>TTCCTAATTCCTAACCATAGCTCCTAGGCGAGACAGTTCCAGAAACCGTAACTCGACGAATTTCGATTTTTGGCGTTTTTCATTAATATATTTGAAATTAGCKCTAAAGTTCCTTTAAAAGTATAAACAAGCCATGTTTTTCAAAAAATTGAAAATCTGAAAAATCTGAAAATTTTCAAAAATTTGGGCCAAAAATTTTTTAACGAATTTTCTGTCTGAAAACAAGTTTTTAGGGGTTTACAGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26537</snp_id>
        <super_contig>c002400855.Contig3</super_contig>
        <contig_pos>4517</contig_pos>
        <strand>+</strand>
        <context>TAGCKCTAAA[G/T]TTCCTTTAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTTCGATTTTTGGCGTTTTTCATTAATATATTTGAAATTAGCTCTAAA</left_flank>
        <right_flank>TTCCTTTAAAAGTATAAACAAGCCATGTTTTTCAAAAAATTGAAAATCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCTCATATTTCTACATCACATTTGATGTTCTAACTAGGTAAAACTAAGGTATTCAAGGTTTTCCTTCTAAATGTAAACTAGAAAAATAATCATTATTCGCAAAAACTAGCAGTCATAGTCATCAGGTTCTCTGTTTTCAAGAAATTGAGTCTAAACAAAGTCTCAATACTTTTCAGCCACCCTGTATAGATTGGGGGAAGGGAAAGAACCAGACAGCAGTGTGAACACAGGTAAAGGGGGACTGCCGAAAAACTGCTAAATGACAGCTGAAGAGGCGCAAACTGGCGAATGACTGCTAGTTGGCAGCCGAAGGAGAACTGACGGGCCGTTGACGGTCCGTCGACGGACCGTCGGTACCGATTGGAAAGTTACACCACGAATTTTTTGGCCTTCCTAATTCCTAACCATAGCTCCTAGGCGAGACAGTTCCAGAAACCGTAACTCGACGAATTTCGATTTTTGGCGTTTTTCATTAATATATTTGAAATTAGCTCTAAAGTTCCTTTAAAAGTATAAACAAGCCATGTTTTTCAAAAAATTGAAAATCTGAAAAATCTGAAAATTTTCAAAAATTTGGGCCAAAAATTTTTTAACGAATTTTCTGTCTGAAAACAAGTTTTTAGGGGTTTACAGACACGCTGATTCCAAAAATCACACTTATTCTTATATCGCCTCTAAACCAAGCCATGTTTTTCAAAAAAATTGAAAATCTGAAAAATCTGAAAATTTTCAAAAATTTGGGCTCAAAAATATTTTTTGGAATTATTTGTCTGAAAATTTGTTTTCAGGGGTTTACAAATCACATGTTCATTTGTGATGGAAACTTCTCAAAACCTCAAAAAATACATTCCGAAACTTTTTGGACTTCCTAAGGCCTAATAATGGCTTCTAACAGTACGCGAAAGGGTTCAAAGTACCGTATCTCGACGAATTTTGATTTTTAGAAGTTATCGTTCACAAATTCTATATCAGCGCAAAATTCCCTTCAAAATGAGTATA</canonical>
            <polymorphic>CGCTCATATTTCTACATCACATTTGATGTTCTAACTAGGTAAAACTAAGGTATTCAAGGTTTTCCTTCTAAATGTAAACTAGAAAAATAATCATTATTCGCAAAAACTAGCAGTCATAGTCATCAGGTTCTCTGTTTTCAAGAAATTGAGTCTAAACAAAGTCTCAATACTTTTCAGCCACCCTGTATAGATTGGGGGAAGGGAAAGAACCAGACAGCAGTGTGAACACAGGTAAAGGGGGACTGCCGAAAAACTGCTAAATGACAGCTGAAGAGGCGCAAACTGGCGAATGACTGCTAGTTGGCAGCCGAAGGAGAACTGACGGGCCGTTGACGGTCCGTCGACGGACCGTCGGTACCGATTGGAAAGTTACACCACGAATTTTTTGGCCTTCCTAATTCCTAACCATAGCTCCTAGGCGAGACAGTTCCAGAAACCGTAACTCGACGAATTTCGATTTTTGGCGTTTTTCATTAATATATTTGAAATTAGCTCTAAAKTTCCTTTAAAAGTATAAACAAGCCATGTTTTTCAAAAAATTGAAAATCTGAAAAATCTGAAAATTTTCAAAAATTTGGGCCAAAAATTTTTTAACGAATTTTCTGTCTGAAAACAAGTTTTTAGGGGTTTACAGACACGCTGATTCCAAAAATCACACTTATTCTTATATCGCCTCTAAACCAAGCCATGTTTTTCAAAAAAATTGAAAATCTGAAAAATCTGAAAATTTTCAAAAATTTGGGCTCAAAAATATTTTTTGGAATTATTTGTCTGAAAATTTGTTTTCAGGGGTTTACAAATCACATGTTCATTTGTGATGGAAACTTCTCAAAACCTCAAAAAATACATTCCGAAACTTTTTGGACTTCCTAAGGCCTAATAATGGCTTCTAACAGTACGCGAAAGGGTTCAAAGTACCGTATCTCGACGAATTTTGATTTTTAGAAGTTATCGTTCACAAATTCTATATCAGCGCAAAATTCCCTTCAAAATGAGTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCTAATTCCTAACCATAGCTC</pcr_primer_p1>
		<pcr_primer_p2>GTGTCTGTAAACCCCTAAAAACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTCCTAATTCCTAACCATAGCTCCTAGGCGAGACAGTTCCAGAAACCGTAACTCGACGAATTTCGATTTTTGGCGTTTTTCATTAATATATTTGAAATTAGCTCTAAAGTTCCTTTAAAAGTATAAACAAGCCATGTTTTTCAAAAAATTGAAAATCTGAAAAATCTGAAAATTTTCAAAAATTTGGGCCAAAAATTTTTTAACGAATTTTCTGTCTGAAAACAAGTTTTTAGGGGTTTACAGACAC</canonical_amplicon>
		<polymorphic_amplicon>TTCCTAATTCCTAACCATAGCTCCTAGGCGAGACAGTTCCAGAAACCGTAACTCGACGAATTTCGATTTTTGGCGTTTTTCATTAATATATTTGAAATTAGCTCTAAAKTTCCTTTAAAAGTATAAACAAGCCATGTTTTTCAAAAAATTGAAAATCTGAAAAATCTGAAAATTTTCAAAAATTTGGGCCAAAAATTTTTTAACGAATTTTCTGTCTGAAAACAAGTTTTTAGGGGTTTACAGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26546</snp_id>
        <super_contig>c002400855.Contig3</super_contig>
        <contig_pos>7552</contig_pos>
        <strand></strand>
        <context>ATAAGGAAAA[G/T]ATGRGAGACG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAATACAAATTTAGATGAATACAAGAGATAAAGTGAGGGATAAGGAAAA</left_flank>
        <right_flank>ATGAGAGACGCAGAGATTTGCACCTGGACACCCCATATTTCATTAGAGTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCTGAAAATAGAATGTCTGAAAATAGCTGAAAATGGCTATAAAACGTCTGAAAATGACGGAAAACGATTCTAAAATGACTGAAAATGATTCTAAAATGACTGAAAATGGCTGAAAATGGCTCTAAATTGTCTGAAAATAGCTGAAAATGACTCTGAAATGTCTAAAAATGTCTGAAAAATGCTGAAAATATCTCTAAAAATGTCTGAAAATGACTCTGAAATGTCTGAAAATGTCTGAAAATGATTTAAAGTGAAAAAAAGCCATGTTTTGGAAAAATTTTCGAAATTTTCGAAAAAAAAATTGGGCTCAAAAAATTTTTTTTCGAAATATTTTCTGAAAAAATTTTTTTTTAAACTTATTTTTTGGAAATTTTATACATCAAAGTCTCTAGAAATGCACTAAATTCAAAATTTTGGGACCAAAAGATCCAGAATTTCACTTCTAGATGAATACAAATTTAGATGAATACAAGAGATAAAGTGAGGGATAAGGAAAAGATGAGAGACGCAGAGATTTGCACCTGGACACCCCATATTTCATTAGAGTTCTGAGCTGCTCATTTTGAGAAGGAGCAGGATTAACAGGAAATGAGCAATTTCCCCCATAGAAACTTGAAATTGAAAAGTCCAAATCCTTTAATGGAAAATAGAAGCGAGAGAATTTGCACCTGGCAATCATTAGGATTACTGTAACTTTGTCAGTTTTTAGTCAAATTTGATGATAACTAAATTTTCAGAATGAGCAAGTTATCAGCTTCAAAATGGGTATAAACATGCCTAGTTTTCAAAAATGTTTAATTATTCGATAAAAAGTTTTGGGCCCAAAAATTTTTTTTTGCTGAAAATAAGCTTCTAGGGGTTTTCAGACACGCTGATTCCAAAAATCTCATGATTTTTCTCAAATAGTTCTCTGAAAACCTGAAAAGCTAGAACCTACACAGTCGTAGTTTCCTCTGAGGTCAAAAGTGCGCATTTGGGAACTACAGTAGTATTATTAC</canonical>
            <polymorphic>TGTCTGAAAATAGAATGTCTGAAAATAGCTGAAAATGGCTATAAAACGTCTGAAAATGACGGAAAACGATTCTAAAATGACTGAAAATGATTCTAAAATGACTGAAAATGGCTGAAAATGGCTCTAAATTGTCTGAAAATAGCTGAAAATGACTCTGAAATGTCTAAAAATGTCTGAAAAATGCTGAAAATATCTCTAAAAATGTCTGAAAATGACTCTGAAATGTCTGAAAATGTCTGAAAATGATTTAAAGTGAAAAAAAGCCATGTTTTGGAAAAATTTTCGAAATTTTCGAAAAAAAAATTGGGCTCAAAAAATTTTTTTTCGAAATATTTTCTGAAAAAATTTTTTTTTAAACTTATTTTTTGGAAATTTTATACATCAAAGTCTCTAGAAATGCACTAAATTCAAAATTTTGGGACCAAAAGATCCAGAATTTCACTTCTAGATGAATACAAATTTAGATGAATACAAGAGATAAAGTGAGGGATAAGGAAAAKATGAGAGACGCAGAGATTTGCACCTGGACACCCCATATTTCATTAGAGTTCTGAGCTGCTCATTTTGAGAAGGAGCAGGATTAACAGGAAATGAGCAATTTCCCCCATAGAAACTTGAAATTGAAAAGTCCAAATCCTTTAATGGAAAATAGAAGCGAGAGAATTTGCACCTGGCAATCATTAGGATTACTGTAACTTTGTCAGTTTTTAGTCAAATTTGATGATAACTAAATTTTCAGAATGAGCAAGTTATCAGCTTCAAAATGGGTATAAACATGCCTAGTTTTCAAAAATGTTTAATTATTCGATAAAAAGTTTTGGGCCCAAAAATTTTTTTTTGCTGAAAATAAGCTTCTAGGGGTTTTCAGACACGCTGATTCCAAAAATCTCATGATTTTTCTCAAATAGTTCTCTGAAAACCTGAAAAGCTAGAACCTACACAGTCGTAGTTTCCTCTGAGGTCAAAAGTGCGCATTTGGGAACTACAGTAGTATTATTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGATCCAGAATTTCACTT</pcr_primer_p1>
		<pcr_primer_p2>CAAATTCTCTCGCTTCTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGATCCAGAATTTCACTTCTAGATGAATACAAATTTAGATGAATACAAGAGATAAAGTGAGGGATAAGGAAAAGATGAGAGACGCAGAGATTTGCACCTGGACACCCCATATTTCATTAGAGTTCTGAGCTGCTCATTTTGAGAAGGAGCAGGATTAACAGGAAATGAGCAATTTCCCCCATAGAAACTTGAAATTGAAAAGTCCAAATCCTTTAATGGAAAATAGAAGCGAGAGAATTTG</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGATCCAGAATTTCACTTCTAGATGAATACAAATTTAGATGAATACAAGAGATAAAGTGAGGGATAAGGAAAAKATGAGAGACGCAGAGATTTGCACCTGGACACCCCATATTTCATTAGAGTTCTGAGCTGCTCATTTTGAGAAGGAGCAGGATTAACAGGAAATGAGCAATTTCCCCCATAGAAACTTGAAATTGAAAAGTCCAAATCCTTTAATGGAAAATAGAAGCGAGAGAATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26547</snp_id>
        <super_contig>c002400855.Contig3</super_contig>
        <contig_pos>7556</contig_pos>
        <strand></strand>
        <context>GGAAAAKATG[A/G]GAGACGCAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACAAATTTAGATGAATACAAGAGATAAAGTGAGGGATAAGGAAAAGATG</left_flank>
        <right_flank>GAGACGCAGAGATTTGCACCTGGACACCCCATATTTCATTAGAGTTCTGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAATAGAATGTCTGAAAATAGCTGAAAATGGCTATAAAACGTCTGAAAATGACGGAAAACGATTCTAAAATGACTGAAAATGATTCTAAAATGACTGAAAATGGCTGAAAATGGCTCTAAATTGTCTGAAAATAGCTGAAAATGACTCTGAAATGTCTAAAAATGTCTGAAAAATGCTGAAAATATCTCTAAAAATGTCTGAAAATGACTCTGAAATGTCTGAAAATGTCTGAAAATGATTTAAAGTGAAAAAAAGCCATGTTTTGGAAAAATTTTCGAAATTTTCGAAAAAAAAATTGGGCTCAAAAAATTTTTTTTCGAAATATTTTCTGAAAAAATTTTTTTTTAAACTTATTTTTTGGAAATTTTATACATCAAAGTCTCTAGAAATGCACTAAATTCAAAATTTTGGGACCAAAAGATCCAGAATTTCACTTCTAGATGAATACAAATTTAGATGAATACAAGAGATAAAGTGAGGGATAAGGAAAAGATGAGAGACGCAGAGATTTGCACCTGGACACCCCATATTTCATTAGAGTTCTGAGCTGCTCATTTTGAGAAGGAGCAGGATTAACAGGAAATGAGCAATTTCCCCCATAGAAACTTGAAATTGAAAAGTCCAAATCCTTTAATGGAAAATAGAAGCGAGAGAATTTGCACCTGGCAATCATTAGGATTACTGTAACTTTGTCAGTTTTTAGTCAAATTTGATGATAACTAAATTTTCAGAATGAGCAAGTTATCAGCTTCAAAATGGGTATAAACATGCCTAGTTTTCAAAAATGTTTAATTATTCGATAAAAAGTTTTGGGCCCAAAAATTTTTTTTTGCTGAAAATAAGCTTCTAGGGGTTTTCAGACACGCTGATTCCAAAAATCTCATGATTTTTCTCAAATAGTTCTCTGAAAACCTGAAAAGCTAGAACCTACACAGTCGTAGTTTCCTCTGAGGTCAAAAGTGCGCATTTGGGAACTACAGTAGTATTATTACTGGA</canonical>
            <polymorphic>TGAAAATAGAATGTCTGAAAATAGCTGAAAATGGCTATAAAACGTCTGAAAATGACGGAAAACGATTCTAAAATGACTGAAAATGATTCTAAAATGACTGAAAATGGCTGAAAATGGCTCTAAATTGTCTGAAAATAGCTGAAAATGACTCTGAAATGTCTAAAAATGTCTGAAAAATGCTGAAAATATCTCTAAAAATGTCTGAAAATGACTCTGAAATGTCTGAAAATGTCTGAAAATGATTTAAAGTGAAAAAAAGCCATGTTTTGGAAAAATTTTCGAAATTTTCGAAAAAAAAATTGGGCTCAAAAAATTTTTTTTCGAAATATTTTCTGAAAAAATTTTTTTTTAAACTTATTTTTTGGAAATTTTATACATCAAAGTCTCTAGAAATGCACTAAATTCAAAATTTTGGGACCAAAAGATCCAGAATTTCACTTCTAGATGAATACAAATTTAGATGAATACAAGAGATAAAGTGAGGGATAAGGAAAAGATGRGAGACGCAGAGATTTGCACCTGGACACCCCATATTTCATTAGAGTTCTGAGCTGCTCATTTTGAGAAGGAGCAGGATTAACAGGAAATGAGCAATTTCCCCCATAGAAACTTGAAATTGAAAAGTCCAAATCCTTTAATGGAAAATAGAAGCGAGAGAATTTGCACCTGGCAATCATTAGGATTACTGTAACTTTGTCAGTTTTTAGTCAAATTTGATGATAACTAAATTTTCAGAATGAGCAAGTTATCAGCTTCAAAATGGGTATAAACATGCCTAGTTTTCAAAAATGTTTAATTATTCGATAAAAAGTTTTGGGCCCAAAAATTTTTTTTTGCTGAAAATAAGCTTCTAGGGGTTTTCAGACACGCTGATTCCAAAAATCTCATGATTTTTCTCAAATAGTTCTCTGAAAACCTGAAAAGCTAGAACCTACACAGTCGTAGTTTCCTCTGAGGTCAAAAGTGCGCATTTGGGAACTACAGTAGTATTATTACTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGATCCAGAATTTCACTT</pcr_primer_p1>
		<pcr_primer_p2>CAAATTCTCTCGCTTCTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGATCCAGAATTTCACTTCTAGATGAATACAAATTTAGATGAATACAAGAGATAAAGTGAGGGATAAGGAAAAGATGAGAGACGCAGAGATTTGCACCTGGACACCCCATATTTCATTAGAGTTCTGAGCTGCTCATTTTGAGAAGGAGCAGGATTAACAGGAAATGAGCAATTTCCCCCATAGAAACTTGAAATTGAAAAGTCCAAATCCTTTAATGGAAAATAGAAGCGAGAGAATTTG</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGATCCAGAATTTCACTTCTAGATGAATACAAATTTAGATGAATACAAGAGATAAAGTGAGGGATAAGGAAAAGATGRGAGACGCAGAGATTTGCACCTGGACACCCCATATTTCATTAGAGTTCTGAGCTGCTCATTTTGAGAAGGAGCAGGATTAACAGGAAATGAGCAATTTCCCCCATAGAAACTTGAAATTGAAAAGTCCAAATCCTTTAATGGAAAATAGAAGCGAGAGAATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26548</snp_id>
        <super_contig>c002400855.Contig3</super_contig>
        <contig_pos>7601</contig_pos>
        <strand></strand>
        <context>TTCATTAGAG[T/C]TCTGAGCTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGATGAGAGACGCAGAGATTTGCACCTGGACACCCCATATTTCATTAGAG</left_flank>
        <right_flank>TCTGAGCTGCTCATTTTGAGAAGGAGCAGGATTAACAGGAAATGAGCAAT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAAAATGACGGAAAACGATTCTAAAATGACTGAAAATGATTCTAAAATGACTGAAAATGGCTGAAAATGGCTCTAAATTGTCTGAAAATAGCTGAAAATGACTCTGAAATGTCTAAAAATGTCTGAAAAATGCTGAAAATATCTCTAAAAATGTCTGAAAATGACTCTGAAATGTCTGAAAATGTCTGAAAATGATTTAAAGTGAAAAAAAGCCATGTTTTGGAAAAATTTTCGAAATTTTCGAAAAAAAAATTGGGCTCAAAAAATTTTTTTTCGAAATATTTTCTGAAAAAATTTTTTTTTAAACTTATTTTTTGGAAATTTTATACATCAAAGTCTCTAGAAATGCACTAAATTCAAAATTTTGGGACCAAAAGATCCAGAATTTCACTTCTAGATGAATACAAATTTAGATGAATACAAGAGATAAAGTGAGGGATAAGGAAAAGATGAGAGACGCAGAGATTTGCACCTGGACACCCCATATTTCATTAGAGTTCTGAGCTGCTCATTTTGAGAAGGAGCAGGATTAACAGGAAATGAGCAATTTCCCCCATAGAAACTTGAAATTGAAAAGTCCAAATCCTTTAATGGAAAATAGAAGCGAGAGAATTTGCACCTGGCAATCATTAGGATTACTGTAACTTTGTCAGTTTTTAGTCAAATTTGATGATAACTAAATTTTCAGAATGAGCAAGTTATCAGCTTCAAAATGGGTATAAACATGCCTAGTTTTCAAAAATGTTTAATTATTCGATAAAAAGTTTTGGGCCCAAAAATTTTTTTTTGCTGAAAATAAGCTTCTAGGGGTTTTCAGACACGCTGATTCCAAAAATCTCATGATTTTTCTCAAATAGTTCTCTGAAAACCTGAAAAGCTAGAACCTACACAGTCGTAGTTTCCTCTGAGGTCAAAAGTGCGCATTTGGGAACTACAGTAGTATTATTACTGGAATTATTACTGGATTAGTATTATTACTGGAATTTAAAATCGAAAAT</canonical>
            <polymorphic>CTGAAAATGACGGAAAACGATTCTAAAATGACTGAAAATGATTCTAAAATGACTGAAAATGGCTGAAAATGGCTCTAAATTGTCTGAAAATAGCTGAAAATGACTCTGAAATGTCTAAAAATGTCTGAAAAATGCTGAAAATATCTCTAAAAATGTCTGAAAATGACTCTGAAATGTCTGAAAATGTCTGAAAATGATTTAAAGTGAAAAAAAGCCATGTTTTGGAAAAATTTTCGAAATTTTCGAAAAAAAAATTGGGCTCAAAAAATTTTTTTTCGAAATATTTTCTGAAAAAATTTTTTTTTAAACTTATTTTTTGGAAATTTTATACATCAAAGTCTCTAGAAATGCACTAAATTCAAAATTTTGGGACCAAAAGATCCAGAATTTCACTTCTAGATGAATACAAATTTAGATGAATACAAGAGATAAAGTGAGGGATAAGGAAAAGATGAGAGACGCAGAGATTTGCACCTGGACACCCCATATTTCATTAGAGYTCTGAGCTGCTCATTTTGAGAAGGAGCAGGATTAACAGGAAATGAGCAATTTCCCCCATAGAAACTTGAAATTGAAAAGTCCAAATCCTTTAATGGAAAATAGAAGCGAGAGAATTTGCACCTGGCAATCATTAGGATTACTGTAACTTTGTCAGTTTTTAGTCAAATTTGATGATAACTAAATTTTCAGAATGAGCAAGTTATCAGCTTCAAAATGGGTATAAACATGCCTAGTTTTCAAAAATGTTTAATTATTCGATAAAAAGTTTTGGGCCCAAAAATTTTTTTTTGCTGAAAATAAGCTTCTAGGGGTTTTCAGACACGCTGATTCCAAAAATCTCATGATTTTTCTCAAATAGTTCTCTGAAAACCTGAAAAGCTAGAACCTACACAGTCGTAGTTTCCTCTGAGGTCAAAAGTGCGCATTTGGGAACTACAGTAGTATTATTACTGGAATTATTACTGGATTAGTATTATTACTGGAATTTAAAATCGAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGATCCAGAATTTCACTT</pcr_primer_p1>
		<pcr_primer_p2>CAAATTCTCTCGCTTCTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGATCCAGAATTTCACTTCTAGATGAATACAAATTTAGATGAATACAAGAGATAAAGTGAGGGATAAGGAAAAGATGAGAGACGCAGAGATTTGCACCTGGACACCCCATATTTCATTAGAGTTCTGAGCTGCTCATTTTGAGAAGGAGCAGGATTAACAGGAAATGAGCAATTTCCCCCATAGAAACTTGAAATTGAAAAGTCCAAATCCTTTAATGGAAAATAGAAGCGAGAGAATTTG</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGATCCAGAATTTCACTTCTAGATGAATACAAATTTAGATGAATACAAGAGATAAAGTGAGGGATAAGGAAAAGATGAGAGACGCAGAGATTTGCACCTGGACACCCCATATTTCATTAGAGYTCTGAGCTGCTCATTTTGAGAAGGAGCAGGATTAACAGGAAATGAGCAATTTCCCCCATAGAAACTTGAAATTGAAAAGTCCAAATCCTTTAATGGAAAATAGAAGCGAGAGAATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26549</snp_id>
        <super_contig>c002400855.Contig3</super_contig>
        <contig_pos>7674</contig_pos>
        <strand></strand>
        <context>AACTTGAAAT[T/C]SMAAAGTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGAGCAGGATTAACAGGAAATGAGCAATTTCCCCCATAGAAACTTGAAAT</left_flank>
        <right_flank>GAAAAGTCCAAATCCTTTAATGGAAAATAGAAGCGAGAGAATTTGCACCT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTAAATTGTCTGAAAATAGCTGAAAATGACTCTGAAATGTCTAAAAATGTCTGAAAAATGCTGAAAATATCTCTAAAAATGTCTGAAAATGACTCTGAAATGTCTGAAAATGTCTGAAAATGATTTAAAGTGAAAAAAAGCCATGTTTTGGAAAAATTTTCGAAATTTTCGAAAAAAAAATTGGGCTCAAAAAATTTTTTTTCGAAATATTTTCTGAAAAAATTTTTTTTTAAACTTATTTTTTGGAAATTTTATACATCAAAGTCTCTAGAAATGCACTAAATTCAAAATTTTGGGACCAAAAGATCCAGAATTTCACTTCTAGATGAATACAAATTTAGATGAATACAAGAGATAAAGTGAGGGATAAGGAAAAGATGAGAGACGCAGAGATTTGCACCTGGACACCCCATATTTCATTAGAGTTCTGAGCTGCTCATTTTGAGAAGGAGCAGGATTAACAGGAAATGAGCAATTTCCCCCATAGAAACTTGAAATTGAAAAGTCCAAATCCTTTAATGGAAAATAGAAGCGAGAGAATTTGCACCTGGCAATCATTAGGATTACTGTAACTTTGTCAGTTTTTAGTCAAATTTGATGATAACTAAATTTTCAGAATGAGCAAGTTATCAGCTTCAAAATGGGTATAAACATGCCTAGTTTTCAAAAATGTTTAATTATTCGATAAAAAGTTTTGGGCCCAAAAATTTTTTTTTGCTGAAAATAAGCTTCTAGGGGTTTTCAGACACGCTGATTCCAAAAATCTCATGATTTTTCTCAAATAGTTCTCTGAAAACCTGAAAAGCTAGAACCTACACAGTCGTAGTTTCCTCTGAGGTCAAAAGTGCGCATTTGGGAACTACAGTAGTATTATTACTGGAATTATTACTGGATTAGTATTATTACTGGAATTTAAAATCGAAAATTGTTAGGTTACTGTATCTTTGTCAGTTTTCAGCCAAATTGAACGAAAATTGTATTTTGATGATCACCAAATGT</canonical>
            <polymorphic>TCTAAATTGTCTGAAAATAGCTGAAAATGACTCTGAAATGTCTAAAAATGTCTGAAAAATGCTGAAAATATCTCTAAAAATGTCTGAAAATGACTCTGAAATGTCTGAAAATGTCTGAAAATGATTTAAAGTGAAAAAAAGCCATGTTTTGGAAAAATTTTCGAAATTTTCGAAAAAAAAATTGGGCTCAAAAAATTTTTTTTCGAAATATTTTCTGAAAAAATTTTTTTTTAAACTTATTTTTTGGAAATTTTATACATCAAAGTCTCTAGAAATGCACTAAATTCAAAATTTTGGGACCAAAAGATCCAGAATTTCACTTCTAGATGAATACAAATTTAGATGAATACAAGAGATAAAGTGAGGGATAAGGAAAAGATGAGAGACGCAGAGATTTGCACCTGGACACCCCATATTTCATTAGAGTTCTGAGCTGCTCATTTTGAGAAGGAGCAGGATTAACAGGAAATGAGCAATTTCCCCCATAGAAACTTGAAATYGAAAAGTCCAAATCCTTTAATGGAAAATAGAAGCGAGAGAATTTGCACCTGGCAATCATTAGGATTACTGTAACTTTGTCAGTTTTTAGTCAAATTTGATGATAACTAAATTTTCAGAATGAGCAAGTTATCAGCTTCAAAATGGGTATAAACATGCCTAGTTTTCAAAAATGTTTAATTATTCGATAAAAAGTTTTGGGCCCAAAAATTTTTTTTTGCTGAAAATAAGCTTCTAGGGGTTTTCAGACACGCTGATTCCAAAAATCTCATGATTTTTCTCAAATAGTTCTCTGAAAACCTGAAAAGCTAGAACCTACACAGTCGTAGTTTCCTCTGAGGTCAAAAGTGCGCATTTGGGAACTACAGTAGTATTATTACTGGAATTATTACTGGATTAGTATTATTACTGGAATTTAAAATCGAAAATTGTTAGGTTACTGTATCTTTGTCAGTTTTCAGCCAAATTGAACGAAAATTGTATTTTGATGATCACCAAATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>175 151 139 68 53 43 38 34 30 29 28 27 27 23 23 22 16 15 14 14 11 9 7 4</canonical_bands>
                <polymorphic_bands>175 151 139 68 65 53 38 34 30 29 28 27 27 23 23 16 15 14 14 11 9 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAAGGAGCAGGATTAACAG</pcr_primer_p1>
		<pcr_primer_p2>ACCCCTAGAAGCTTATTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>296</pcr_amplicon_size>
		<canonical_amplicon>GAGAAGGAGCAGGATTAACAGGAAATGAGCAATTTCCCCCATAGAAACTTGAAATTGAAAAGTCCAAATCCTTTAATGGAAAATAGAAGCGAGAGAATTTGCACCTGGCAATCATTAGGATTACTGTAACTTTGTCAGTTTTTAGTCAAATTTGATGATAACTAAATTTTCAGAATGAGCAAGTTATCAGCTTCAAAATGGGTATAAACATGCCTAGTTTTCAAAAATGTTTAATTATTCGATAAAAAGTTTTGGGCCCAAAAATTTTTTTTTGCTGAAAATAAGCTTCTAGGGGT</canonical_amplicon>
		<polymorphic_amplicon>GAGAAGGAGCAGGATTAACAGGAAATGAGCAATTTCCCCCATAGAAACTTGAAATYGAAAAGTCCAAATCCTTTAATGGAAAATAGAAGCGAGAGAATTTGCACCTGGCAATCATTAGGATTACTGTAACTTTGTCAGTTTTTAGTCAAATTTGATGATAACTAAATTTTCAGAATGAGCAAGTTATCAGCTTCAAAATGGGTATAAACATGCCTAGTTTTCAAAAATGTTTAATTATTCGATAAAAAGTTTTGGGCCCAAAAATTTTTTTTTGCTGAAAATAAGCTTCTAGGGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26550</snp_id>
        <super_contig>c002400855.Contig3</super_contig>
        <contig_pos>7675</contig_pos>
        <strand></strand>
        <context>ACTTGAAATY[G/C]MAAAGTCCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GAGCAGGATTAACAGGAAATGAGCAATTTCCCCCATAGAAACTTGAAATT</left_flank>
        <right_flank>AAAAGTCCAAATCCTTTAATGGAAAATAGAAGCGAGAGAATTTGCACCTG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAAATTGTCTGAAAATAGCTGAAAATGACTCTGAAATGTCTAAAAATGTCTGAAAAATGCTGAAAATATCTCTAAAAATGTCTGAAAATGACTCTGAAATGTCTGAAAATGTCTGAAAATGATTTAAAGTGAAAAAAAGCCATGTTTTGGAAAAATTTTCGAAATTTTCGAAAAAAAAATTGGGCTCAAAAAATTTTTTTTCGAAATATTTTCTGAAAAAATTTTTTTTTAAACTTATTTTTTGGAAATTTTATACATCAAAGTCTCTAGAAATGCACTAAATTCAAAATTTTGGGACCAAAAGATCCAGAATTTCACTTCTAGATGAATACAAATTTAGATGAATACAAGAGATAAAGTGAGGGATAAGGAAAAGATGAGAGACGCAGAGATTTGCACCTGGACACCCCATATTTCATTAGAGTTCTGAGCTGCTCATTTTGAGAAGGAGCAGGATTAACAGGAAATGAGCAATTTCCCCCATAGAAACTTGAAATTGAAAAGTCCAAATCCTTTAATGGAAAATAGAAGCGAGAGAATTTGCACCTGGCAATCATTAGGATTACTGTAACTTTGTCAGTTTTTAGTCAAATTTGATGATAACTAAATTTTCAGAATGAGCAAGTTATCAGCTTCAAAATGGGTATAAACATGCCTAGTTTTCAAAAATGTTTAATTATTCGATAAAAAGTTTTGGGCCCAAAAATTTTTTTTTGCTGAAAATAAGCTTCTAGGGGTTTTCAGACACGCTGATTCCAAAAATCTCATGATTTTTCTCAAATAGTTCTCTGAAAACCTGAAAAGCTAGAACCTACACAGTCGTAGTTTCCTCTGAGGTCAAAAGTGCGCATTTGGGAACTACAGTAGTATTATTACTGGAATTATTACTGGATTAGTATTATTACTGGAATTTAAAATCGAAAATTGTTAGGTTACTGTATCTTTGTCAGTTTTCAGCCAAATTGAACGAAAATTGTATTTTGATGATCACCAAATGTT</canonical>
            <polymorphic>CTAAATTGTCTGAAAATAGCTGAAAATGACTCTGAAATGTCTAAAAATGTCTGAAAAATGCTGAAAATATCTCTAAAAATGTCTGAAAATGACTCTGAAATGTCTGAAAATGTCTGAAAATGATTTAAAGTGAAAAAAAGCCATGTTTTGGAAAAATTTTCGAAATTTTCGAAAAAAAAATTGGGCTCAAAAAATTTTTTTTCGAAATATTTTCTGAAAAAATTTTTTTTTAAACTTATTTTTTGGAAATTTTATACATCAAAGTCTCTAGAAATGCACTAAATTCAAAATTTTGGGACCAAAAGATCCAGAATTTCACTTCTAGATGAATACAAATTTAGATGAATACAAGAGATAAAGTGAGGGATAAGGAAAAGATGAGAGACGCAGAGATTTGCACCTGGACACCCCATATTTCATTAGAGTTCTGAGCTGCTCATTTTGAGAAGGAGCAGGATTAACAGGAAATGAGCAATTTCCCCCATAGAAACTTGAAATTSAAAAGTCCAAATCCTTTAATGGAAAATAGAAGCGAGAGAATTTGCACCTGGCAATCATTAGGATTACTGTAACTTTGTCAGTTTTTAGTCAAATTTGATGATAACTAAATTTTCAGAATGAGCAAGTTATCAGCTTCAAAATGGGTATAAACATGCCTAGTTTTCAAAAATGTTTAATTATTCGATAAAAAGTTTTGGGCCCAAAAATTTTTTTTTGCTGAAAATAAGCTTCTAGGGGTTTTCAGACACGCTGATTCCAAAAATCTCATGATTTTTCTCAAATAGTTCTCTGAAAACCTGAAAAGCTAGAACCTACACAGTCGTAGTTTCCTCTGAGGTCAAAAGTGCGCATTTGGGAACTACAGTAGTATTATTACTGGAATTATTACTGGATTAGTATTATTACTGGAATTTAAAATCGAAAATTGTTAGGTTACTGTATCTTTGTCAGTTTTCAGCCAAATTGAACGAAAATTGTATTTTGATGATCACCAAATGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCAGGATTAACAGGAAATG</pcr_primer_p1>
		<pcr_primer_p2>ACCCCTAGAAGCTTATTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>AGCAGGATTAACAGGAAATGAGCAATTTCCCCCATAGAAACTTGAAATTGAAAAGTCCAAATCCTTTAATGGAAAATAGAAGCGAGAGAATTTGCACCTGGCAATCATTAGGATTACTGTAACTTTGTCAGTTTTTAGTCAAATTTGATGATAACTAAATTTTCAGAATGAGCAAGTTATCAGCTTCAAAATGGGTATAAACATGCCTAGTTTTCAAAAATGTTTAATTATTCGATAAAAAGTTTTGGGCCCAAAAATTTTTTTTTGCTGAAAATAAGCTTCTAGGGGT</canonical_amplicon>
		<polymorphic_amplicon>AGCAGGATTAACAGGAAATGAGCAATTTCCCCCATAGAAACTTGAAATTSAAAAGTCCAAATCCTTTAATGGAAAATAGAAGCGAGAGAATTTGCACCTGGCAATCATTAGGATTACTGTAACTTTGTCAGTTTTTAGTCAAATTTGATGATAACTAAATTTTCAGAATGAGCAAGTTATCAGCTTCAAAATGGGTATAAACATGCCTAGTTTTCAAAAATGTTTAATTATTCGATAAAAAGTTTTGGGCCCAAAAATTTTTTTTTGCTGAAAATAAGCTTCTAGGGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26551</snp_id>
        <super_contig>c002400855.Contig3</super_contig>
        <contig_pos>7676</contig_pos>
        <strand></strand>
        <context>CTTGAAATYS[A/C]AAAGTCCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGCAGGATTAACAGGAAATGAGCAATTTCCCCCATAGAAACTTGAAATTG</left_flank>
        <right_flank>AAAGTCCAAATCCTTTAATGGAAAATAGAAGCGAGAGAATTTGCACCTGG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATTGTCTGAAAATAGCTGAAAATGACTCTGAAATGTCTAAAAATGTCTGAAAAATGCTGAAAATATCTCTAAAAATGTCTGAAAATGACTCTGAAATGTCTGAAAATGTCTGAAAATGATTTAAAGTGAAAAAAAGCCATGTTTTGGAAAAATTTTCGAAATTTTCGAAAAAAAAATTGGGCTCAAAAAATTTTTTTTCGAAATATTTTCTGAAAAAATTTTTTTTTAAACTTATTTTTTGGAAATTTTATACATCAAAGTCTCTAGAAATGCACTAAATTCAAAATTTTGGGACCAAAAGATCCAGAATTTCACTTCTAGATGAATACAAATTTAGATGAATACAAGAGATAAAGTGAGGGATAAGGAAAAGATGAGAGACGCAGAGATTTGCACCTGGACACCCCATATTTCATTAGAGTTCTGAGCTGCTCATTTTGAGAAGGAGCAGGATTAACAGGAAATGAGCAATTTCCCCCATAGAAACTTGAAATTGAAAAGTCCAAATCCTTTAATGGAAAATAGAAGCGAGAGAATTTGCACCTGGCAATCATTAGGATTACTGTAACTTTGTCAGTTTTTAGTCAAATTTGATGATAACTAAATTTTCAGAATGAGCAAGTTATCAGCTTCAAAATGGGTATAAACATGCCTAGTTTTCAAAAATGTTTAATTATTCGATAAAAAGTTTTGGGCCCAAAAATTTTTTTTTGCTGAAAATAAGCTTCTAGGGGTTTTCAGACACGCTGATTCCAAAAATCTCATGATTTTTCTCAAATAGTTCTCTGAAAACCTGAAAAGCTAGAACCTACACAGTCGTAGTTTCCTCTGAGGTCAAAAGTGCGCATTTGGGAACTACAGTAGTATTATTACTGGAATTATTACTGGATTAGTATTATTACTGGAATTTAAAATCGAAAATTGTTAGGTTACTGTATCTTTGTCAGTTTTCAGCCAAATTGAACGAAAATTGTATTTTGATGATCACCAAATGTTT</canonical>
            <polymorphic>TAAATTGTCTGAAAATAGCTGAAAATGACTCTGAAATGTCTAAAAATGTCTGAAAAATGCTGAAAATATCTCTAAAAATGTCTGAAAATGACTCTGAAATGTCTGAAAATGTCTGAAAATGATTTAAAGTGAAAAAAAGCCATGTTTTGGAAAAATTTTCGAAATTTTCGAAAAAAAAATTGGGCTCAAAAAATTTTTTTTCGAAATATTTTCTGAAAAAATTTTTTTTTAAACTTATTTTTTGGAAATTTTATACATCAAAGTCTCTAGAAATGCACTAAATTCAAAATTTTGGGACCAAAAGATCCAGAATTTCACTTCTAGATGAATACAAATTTAGATGAATACAAGAGATAAAGTGAGGGATAAGGAAAAGATGAGAGACGCAGAGATTTGCACCTGGACACCCCATATTTCATTAGAGTTCTGAGCTGCTCATTTTGAGAAGGAGCAGGATTAACAGGAAATGAGCAATTTCCCCCATAGAAACTTGAAATTGMAAAGTCCAAATCCTTTAATGGAAAATAGAAGCGAGAGAATTTGCACCTGGCAATCATTAGGATTACTGTAACTTTGTCAGTTTTTAGTCAAATTTGATGATAACTAAATTTTCAGAATGAGCAAGTTATCAGCTTCAAAATGGGTATAAACATGCCTAGTTTTCAAAAATGTTTAATTATTCGATAAAAAGTTTTGGGCCCAAAAATTTTTTTTTGCTGAAAATAAGCTTCTAGGGGTTTTCAGACACGCTGATTCCAAAAATCTCATGATTTTTCTCAAATAGTTCTCTGAAAACCTGAAAAGCTAGAACCTACACAGTCGTAGTTTCCTCTGAGGTCAAAAGTGCGCATTTGGGAACTACAGTAGTATTATTACTGGAATTATTACTGGATTAGTATTATTACTGGAATTTAAAATCGAAAATTGTTAGGTTACTGTATCTTTGTCAGTTTTCAGCCAAATTGAACGAAAATTGTATTTTGATGATCACCAAATGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGGATTAACAGGAAATGA</pcr_primer_p1>
		<pcr_primer_p2>ACCCCTAGAAGCTTATTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>288</pcr_amplicon_size>
		<canonical_amplicon>GCAGGATTAACAGGAAATGAGCAATTTCCCCCATAGAAACTTGAAATTGAAAAGTCCAAATCCTTTAATGGAAAATAGAAGCGAGAGAATTTGCACCTGGCAATCATTAGGATTACTGTAACTTTGTCAGTTTTTAGTCAAATTTGATGATAACTAAATTTTCAGAATGAGCAAGTTATCAGCTTCAAAATGGGTATAAACATGCCTAGTTTTCAAAAATGTTTAATTATTCGATAAAAAGTTTTGGGCCCAAAAATTTTTTTTTGCTGAAAATAAGCTTCTAGGGGT</canonical_amplicon>
		<polymorphic_amplicon>GCAGGATTAACAGGAAATGAGCAATTTCCCCCATAGAAACTTGAAATTGMAAAGTCCAAATCCTTTAATGGAAAATAGAAGCGAGAGAATTTGCACCTGGCAATCATTAGGATTACTGTAACTTTGTCAGTTTTTAGTCAAATTTGATGATAACTAAATTTTCAGAATGAGCAAGTTATCAGCTTCAAAATGGGTATAAACATGCCTAGTTTTCAAAAATGTTTAATTATTCGATAAAAAGTTTTGGGCCCAAAAATTTTTTTTTGCTGAAAATAAGCTTCTAGGGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26552</snp_id>
        <super_contig>c002400855.Contig3</super_contig>
        <contig_pos>9494</contig_pos>
        <strand></strand>
        <context>CCTTATCTCT[C/A]ACTTAATCCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TGGGGTGTCCAGGTGCAAATCTCTGCGTCTCTCATATTTTCCTTATCTCT</left_flank>
        <right_flank>ACTTAATCCCGAATTTCTAGAAATTTCCATTTCCTCATTTGTGCTCCTGC</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGGTTAAAGTTTATTTATCTCGATTCTGGTGAAAGATATCATAAAATGATACACTGGCAAAATGAAAAAAAAAATCAAAGAAAATTTTTTTAGACCCAAATTTTTCACCTAAAAATGCAACAAAATATGGCTTGTTTATACTCACTTTGAAGCTGAAAAATTTCTGATTCCAAAAAGCTAACTTTCATCCAATTTGTCTTAAACCTGCAAAAGATACAGTAGCCCTAATGATTGCCAGGTGCAATTTCTCTCGCTTCTATGTTCCATTTAAGGATTAGGACTTTTGGAAATTTCTCGAAATTTCTATGGGAAATTGCTCATTTGTGCTCATTTTAATTTTAATTTCATTTTAATTATTTGGGATTTCAAGTTTCTATGGGGGAAATTTCTCATTTCCTGTTAATCCTGCTCCTTCTCAAAATGAGCAGCTCAGAGCTCTAATGAAATATGGGGTGTCCAGGTGCAAATCTCTGCGTCTCTCATATTTTCCTTATCTCTCACTTAATCCCGAATTTCTAGAAATTTCCATTTCCTCATTTGTGCTCCTGCTAATCTATAAGCCCCGCCCATTTTCTTAGGCTCCGCCCACTTCCTTTTCTCGATAAAATGAGCAATTCCACGAATTGCTCATTCCCTATTTCACTGAATTCAAAGAAAAATCCCAAAAATGAAAATTTCTAAGATTATTTGGATTTTCTTTGATTTTTTATATTCCTAAAACTATTCTAAAATTCTTCTCAAAAACCTTAAAATGTCTCCTTAGAATGAATGGAGACTTTTAAAGTTTTAAAAAAAATTTATTTTTCTGAAAATTCCTATATGAGGTCAGTCTAAAATTACAGATTTTTTCTTGAAAAAATTCAAATTTCAGATTTTTATTTGGCTGAAAAAACTGAATGATTTTGAAATCTATCATCAAAGAAGCAGCATTGGATGACAAGGTGAGGGAAATATACATTTTTAGTGTTCAAAATTGAATTTTTCCGACTTTTTGAAAGA</canonical>
            <polymorphic>TAGGTTAAAGTTTATTTATCTCGATTCTGGTGAAAGATATCATAAAATGATACACTGGCAAAATGAAAAAAAAAATCAAAGAAAATTTTTTTAGACCCAAATTTTTCACCTAAAAATGCAACAAAATATGGCTTGTTTATACTCACTTTGAAGCTGAAAAATTTCTGATTCCAAAAAGCTAACTTTCATCCAATTTGTCTTAAACCTGCAAAAGATACAGTAGCCCTAATGATTGCCAGGTGCAATTTCTCTCGCTTCTATGTTCCATTTAAGGATTAGGACTTTTGGAAATTTCTCGAAATTTCTATGGGAAATTGCTCATTTGTGCTCATTTTAATTTTAATTTCATTTTAATTATTTGGGATTTCAAGTTTCTATGGGGGAAATTTCTCATTTCCTGTTAATCCTGCTCCTTCTCAAAATGAGCAGCTCAGAGCTCTAATGAAATATGGGGTGTCCAGGTGCAAATCTCTGCGTCTCTCATATTTTCCTTATCTCTMACTTAATCCCGAATTTCTAGAAATTTCCATTTCCTCATTTGTGCTCCTGCTAATCTATAAGCCCCGCCCATTTTCTTAGGCTCCGCCCACTTCCTTTTCTCGATAAAATGAGCAATTCCACGAATTGCTCATTCCCTATTTCACTGAATTCAAAGAAAAATCCCAAAAATGAAAATTTCTAAGATTATTTGGATTTTCTTTGATTTTTTATATTCCTAAAACTATTCTAAAATTCTTCTCAAAAACCTTAAAATGTCTCCTTAGAATGAATGGAGACTTTTAAAGTTTTAAAAAAAATTTATTTTTCTGAAAATTCCTATATGAGGTCAGTCTAAAATTACAGATTTTTTCTTGAAAAAATTCAAATTTCAGATTTTTATTTGGCTGAAAAAACTGAATGATTTTGAAATCTATCATCAAAGAAGCAGCATTGGATGACAAGGTGAGGGAAATATACATTTTTAGTGTTCAAAATTGAATTTTTCCGACTTTTTGAAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>302 129 97 85 54 46 42 37 37 33 32 31 23 22 22 8</canonical_bands>
                <polymorphic_bands>302 129 97 85 79 54 46 37 33 32 31 23 22 22 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTCAGAGCTCTAATGAAATATG</pcr_primer_p1>
		<pcr_primer_p2>TTTCATTTTTGGGATTTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GCTCAGAGCTCTAATGAAATATGGGGTGTCCAGGTGCAAATCTCTGCGTCTCTCATATTTTCCTTATCTCTCACTTAATCCCGAATTTCTAGAAATTTCCATTTCCTCATTTGTGCTCCTGCTAATCTATAAGCCCCGCCCATTTTCTTAGGCTCCGCCCACTTCCTTTTCTCGATAAAATGAGCAATTCCACGAATTGCTCATTCCCTATTTCACTGAATTCAAAGAAAAATCCCAAAAATGAAA</canonical_amplicon>
		<polymorphic_amplicon>GCTCAGAGCTCTAATGAAATATGGGGTGTCCAGGTGCAAATCTCTGCGTCTCTCATATTTTCCTTATCTCTMACTTAATCCCGAATTTCTAGAAATTTCCATTTCCTCATTTGTGCTCCTGCTAATCTATAAGCCCCGCCCATTTTCTTAGGCTCCGCCCACTTCCTTTTCTCGATAAAATGAGCAATTCCACGAATTGCTCATTCCCTATTTCACTGAATTCAAAGAAAAATCCCAAAAATGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26553</snp_id>
        <super_contig>c002400855.Contig3</super_contig>
        <contig_pos>10194</contig_pos>
        <strand>+</strand>
        <context>GTGATTTTCA[A/G]AATCAGCGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGGTGTAGCTTTTTTCAGAAGTTTCAGAGAAAAATTAATGTGATTTTCA</left_flank>
        <right_flank>AATCAGCGTGTCTGAAAACCCCTATAAGCATATTTTCAGCGAAAAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATTTTTTATATTCCTAAAACTATTCTAAAATTCTTCTCAAAAACCTTAAAATGTCTCCTTAGAATGAATGGAGACTTTTAAAGTTTTAAAAAAAATTTATTTTTCTGAAAATTCCTATATGAGGTCAGTCTAAAATTACAGATTTTTTCTTGAAAAAATTCAAATTTCAGATTTTTATTTGGCTGAAAAAACTGAATGATTTTGAAATCTATCATCAAAGAAGCAGCATTGGATGACAAGGTGAGGGAAATATACATTTTTAGTGTTCAAAATTGAATTTTTCCGACTTTTTGAAAGATTCAAAAAATGCGGAAAAATCCTCAAATATTCTTGTTTAATACTAATTTTTCACAATTTTTAACTAGAAAAATTGGAAAATACTAAATAAGAAAAAAAATTAAGAAAAATACGGTAGTTAATCTAAATTCGTACTATTGATCTCATATGACGGTGTAGCTTTTTTCAGAAGTTTCAGAGAAAAATTAATGTGATTTTCAGAATCAGCGTGTCTGAAAACCCCTATAAGCATATTTTCAGCGAAAAAAAAAATTTCGAATCAAAAAAATGTTTTTTTGGGACCAATAATTTTTGCGAAAATTTCGAAAATTTTCCAGACTATGGCTTGATTATACTCATTTTGAAGCCTATCATTTACTGATTTTGAAAATATAAAAAATATTTAATTTGGCAGAAAAATGACAAAGATACAGCAACCTAACAATTTTCGATTTCAAATTCCAGTAATAATACTACTGTAGTTTCCAAATGCGCACTTTTGACCTCACTAGGGAATGGTCAGAACTCATACCACGATCGAGATAAACTAGTGGATTCTCCGAAAAGGGGAGTGCCTCCTGATTCCAAAACAGTTTTCAAATTTTGCTAAATGGCCCGGAGAGCCGAGATATCTGTGCTCTAAAATCAAGCGATAAACCATATAAATCTCGCTTCCGAGTTTTCGATCAGCTGCTTCCTCTCCCCTTAAATTTCCCCTCCAA</canonical>
            <polymorphic>TGATTTTTTATATTCCTAAAACTATTCTAAAATTCTTCTCAAAAACCTTAAAATGTCTCCTTAGAATGAATGGAGACTTTTAAAGTTTTAAAAAAAATTTATTTTTCTGAAAATTCCTATATGAGGTCAGTCTAAAATTACAGATTTTTTCTTGAAAAAATTCAAATTTCAGATTTTTATTTGGCTGAAAAAACTGAATGATTTTGAAATCTATCATCAAAGAAGCAGCATTGGATGACAAGGTGAGGGAAATATACATTTTTAGTGTTCAAAATTGAATTTTTCCGACTTTTTGAAAGATTCAAAAAATGCGGAAAAATCCTCAAATATTCTTGTTTAATACTAATTTTTCACAATTTTTAACTAGAAAAATTGGAAAATACTAAATAAGAAAAAAAATTAAGAAAAATACGGTAGTTAATCTAAATTCGTACTATTGATCTCATATGACGGTGTAGCTTTTTTCAGAAGTTTCAGAGAAAAATTAATGTGATTTTCARAATCAGCGTGTCTGAAAACCCCTATAAGCATATTTTCAGCGAAAAAAAAAATTTCGAATCAAAAAAATGTTTTTTTGGGACCAATAATTTTTGCGAAAATTTCGAAAATTTTCCAGACTATGGCTTGATTATACTCATTTTGAAGCCTATCATTTACTGATTTTGAAAATATAAAAAATATTTAATTTGGCAGAAAAATGACAAAGATACAGCAACCTAACAATTTTCGATTTCAAATTCCAGTAATAATACTACTGTAGTTTCCAAATGCGCACTTTTGACCTCACTAGGGAATGGTCAGAACTCATACCACGATCGAGATAAACTAGTGGATTCTCCGAAAAGGGGAGTGCCTCCTGATTCCAAAACAGTTTTCAAATTTTGCTAAATGGCCCGGAGAGCCGAGATATCTGTGCTCTAAAATCAAGCGATAAACCATATAAATCTCGCTTCCGAGTTTTCGATCAGCTGCTTCCTCTCCCCTTAAATTTCCCCTCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>299 276 201 141 56 27</canonical_bands>
                <polymorphic_bands>299 276 257 141 27</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>287 181 115 115 108 63 46 39 23 14 9</canonical_bands>
                <polymorphic_bands>287 181 115 115 108 63 46 39 37 9</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>299 276 201 141 56 27</canonical_bands>
                <polymorphic_bands>299 276 257 141 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATATGACGGTGTAGCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAATTATCTCGGTTATTTGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>803</pcr_amplicon_size>
		<canonical_amplicon>CATATGACGGTGTAGCTTTTTTCAGAAGTTTCAGAGAAAAATTAATGTGATTTTCAGAATCAGCGTGTCTGAAAACCCC</canonical_amplicon>
		<polymorphic_amplicon>CATATGACGGTGTAGCTTTTTTCAGAAGTTTCAGAGAAAAATTAATGTGATTTTCARAATCAGCGTGTCTGAAAACCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26554</snp_id>
        <super_contig>c002400855.Contig3</super_contig>
        <contig_pos>12513</contig_pos>
        <strand></strand>
        <context>tggacccaaa[A/C]attttttttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGAAAACCCCTAGAAGCTTATTTTCAGAAAAAAAATTTTTGGACCCAAA</left_flank>
        <right_flank>ATTTTTTTTTCGAAATTTTCAAAGTTTTCCAAAATATGGCTTGTTTATAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGCTCTAATGAAAAGGGTGTTGCCAGGTGCAAATCTCTGCGTCTCCCATATTTTCCTTATCCCTCGCTTAATCTCTTTCAAATTTGTATTCATCTAGAAGTGACATTTTGATCTTTTGATTCTAAAATTCCAATTAAATGGGATCTATAGGGATTTGGAATTGCAAAATTTCGAAAATTCCAAAAATTTTAAATTTCCTAATTTCAGAAATTGAAATGTCTCAACGGATCGATCAAACTGTAATAGACAGGTTGAAACAACTTACAATCCAATACAAAATAGGTGAGAAAATAACAATCCAAGCTTAAATGTAGGTTTTTTGAAATTTCAGAACATATTGACCAAAATGAATACCGGGTAATTGATCAAAAAGATGGAAATGTGAGAAGTTGGAGCTTTTGCAGATGTTTTTGAGGGGTAAGAAGTGTGATTTTTGAAATCAGCGTGTCTGAAAACCCCTAGAAGCTTATTTTCAGAAAAAAAATTTTTGGACCCAAAAATTTTTTTTTCGAAATTTTCAAAGTTTTCCAAAATATGGCTTGTTTATACTCATTTTAAAGGAAATTTTGAACTGATTTCAAATTTCACATTTTCAACATTAAAAAAATCAAAACTCAAGCGTTTTTTCAGGACAAACTGATTGAGAAAAATCCGCACTTATTACGGTAATCTGAAGGAGTACGAAATGTCTGTTCGCGTATCGGTGTCAACAATGTCCCAAACGAACAGAAAACTTTTTTGTAAATGAACGAAAAGTGGCAAAATGAGATAATAAAGAAAATTGATAAAAATTGGATTCTATCACATCAACCTGGACTTATACCTCAAACACCCGTTCTCAAAGGTAGGAAAAGTGGAATTTTTCAGTTTTAATGAAGCAAATGAATGTAATTTTTGGAATCAGCGTGTCTGAAAACCACTAAAAGCAATTCTTCAAAAAAAAGTGGAAAAAAAAATTCTGGACCCAAAAATTTTTTTTCGCAATTTTCAAATTTTTCC</canonical>
            <polymorphic>GAGCTCTAATGAAAAGGGTGTTGCCAGGTGCAAATCTCTGCGTCTCCCATATTTTCCTTATCCCTCGCTTAATCTCTTTCAAATTTGTATTCATCTAGAAGTGACATTTTGATCTTTTGATTCTAAAATTCCAATTAAATGGGATCTATAGGGATTTGGAATTGCAAAATTTCGAAAATTCCAAAAATTTTAAATTTCCTAATTTCAGAAATTGAAATGTCTCAACGGATCGATCAAACTGTAATAGACAGGTTGAAACAACTTACAATCCAATACAAAATAGGTGAGAAAATAACAATCCAAGCTTAAATGTAGGTTTTTTGAAATTTCAGAACATATTGACCAAAATGAATACCGGGTAATTGATCAAAAAGATGGAAATGTGAGAAGTTGGAGCTTTTGCAGATGTTTTTGAGGGGTAAGAAGTGTGATTTTTGAAATCAGCGTGTCTGAAAACCCCTAGAAGCTTATTTTCAGAAAAAAAATTTTTGGACCCAAAMATTTTTTTTTCGAAATTTTCAAAGTTTTCCAAAATATGGCTTGTTTATACTCATTTTAAAGGAAATTTTGAACTGATTTCAAATTTCACATTTTCAACATTAAAAAAATCAAAACTCAAGCGTTTTTTCAGGACAAACTGATTGAGAAAAATCCGCACTTATTACGGTAATCTGAAGGAGTACGAAATGTCTGTTCGCGTATCGGTGTCAACAATGTCCCAAACGAACAGAAAACTTTTTTGTAAATGAACGAAAAGTGGCAAAATGAGATAATAAAGAAAATTGATAAAAATTGGATTCTATCACATCAACCTGGACTTATACCTCAAACACCCGTTCTCAAAGGTAGGAAAAGTGGAATTTTTCAGTTTTAATGAAGCAAATGAATGTAATTTTTGGAATCAGCGTGTCTGAAAACCACTAAAAGCAATTCTTCAAAAAAAAGTGGAAAAAAAAATTCTGGACCCAAAAATTTTTTTTCGCAATTTTCAAATTTTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>277 159 132 97 81 50 45 41 21 18 16 15 14 9 9 9 7</canonical_bands>
                <polymorphic_bands>277 159 132 97 81 50 45 41 30 21 18 15 9 9 9 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>199 123 115 81 68 50 45 38 36 32 27 27 18 16 15 14 13 10 9 9 9 9 8 8 8 7 6</canonical_bands>
                <polymorphic_bands>199 123 115 81 68 50 45 38 36 32 30 27 27 18 15 13 10 9 9 9 9 8 8 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTTTTTGAGGGGTAAGAAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCTCAATCAGTTTGTCCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATGTTTTTGAGGGGTAAGAAGTGTGATTTTTGAAATCAGCGTGTCTGAAAACCCCTAGAAGCTTATTTTCAGAAAAAAAATTTTTGGACCCAAAAATTTTTTTTTCGAAATTTTCAAAGTTTTCCAAAATATGGCTTGTTTATACTCATTTTAAAGGAAATTTTGAACTGATTTCAAATTTCACATTTTCAACATTAAAAAAATCAAAACTCAAGCGTTTTTTCAGGACAAACTGATTGAGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATGTTTTTGAGGGGTAAGAAGTGTGATTTTTGAAATCAGCGTGTCTGAAAACCCCTAGAAGCTTATTTTCAGAAAAAAAATTTTTGGACCCAAAMATTTTTTTTTCGAAATTTTCAAAGTTTTCCAAAATATGGCTTGTTTATACTCATTTTAAAGGAAATTTTGAACTGATTTCAAATTTCACATTTTCAACATTAAAAAAATCAAAACTCAAGCGTTTTTTCAGGACAAACTGATTGAGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26555</snp_id>
        <super_contig>c002500822.Contig1</super_contig>
        <contig_pos>6918</contig_pos>
        <strand>+</strand>
        <context>ATGCTCTTGT[A/C]TTGGAGACTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACTGTGACCAGCTATGCGCGAACCATCGCCCCGGCTTCACATGCTCTTGT</left_flank>
        <right_flank>TTGGAGACTGTTTCACACTTCAAATGGATCATGGACCAGGAAAGGATAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGAGAATACAGATGTCCACCTGGAAAATGGAATTGTCCGGGTACTGGACACTGTATTGAGCAATTGAAACTGTGCGATGGATCAAAGGATTGTGCAGATGGAGCTGATGAGCAACAATGTTGTGAGTTTTCTATTCGTGGTCTAGAATTTAATGGCTCAAACTTTTTGAAGTAATTGAATGAAAATAGACCCCCATTTTTTTGTAGTTGAGCTTTCTACTACAGGCTCGAAGCGTTATACTATCTCTACATAAGATCATAATTCCGCTATTTATGCCTCAAAAAAATTCTAAAATTCCAGCCCAAAATCTCTGCCCATCCCTCGGTTGCCAAGCCGGATGTCATCCATCCCCTCACGGAGGAGAATGCACCTGTCCATCTGGATACAAACTCGACGACCGTTTCCATCGCACTTGTTCCGATATCAATGAGTGTGCTGAGTTTGGCTACTGTGACCAGCTATGCGCGAACCATCGCCCCGGCTTCACATGCTCTTGTCTTGGAGACTGTTTCACACTTCAAATGGATCATGGACCAGGAAAGGATAATCTGACGATGAGAGGTTACTGTATCTCGAATAATGCTGATAAAATGAAATTGTTCGTGGCGAGAAGAGAGGGTCTGTATCGATTGAATCCAAAGAATCCAGATGAAGAGGTTAAGAAGTTGGCTTCTGGAGAGTTCATTTATGGAATTGATTTCGATTATGGAGATCGAAAAATCTTCTGGACTGATCGATTGGCACACTCGGCGTTTAGTGCTGACGTCGATGATGAAGGAGAAATTTCACAGATTAAGTGAGCTCAACAACAGAAGCCATCTCCTCTATGTGGTTTTTTTTTCAGGAAGCTCAGCCTCAAATCTCTTGTCTATCCCCGCTGCTTGGCCGTTGACTGGATTACCAACACTTTGTATATTATTGAATCTGGATCCAGAAGAATCGACGTCTCCTCATATGATGGAGATCGGAGAACTGTTCTTCTTGCCGATGGACTCACT</canonical>
            <polymorphic>GTGGAGAATACAGATGTCCACCTGGAAAATGGAATTGTCCGGGTACTGGACACTGTATTGAGCAATTGAAACTGTGCGATGGATCAAAGGATTGTGCAGATGGAGCTGATGAGCAACAATGTTGTGAGTTTTCTATTCGTGGTCTAGAATTTAATGGCTCAAACTTTTTGAAGTAATTGAATGAAAATAGACCCCCATTTTTTTGTAGTTGAGCTTTCTACTACAGGCTCGAAGCGTTATACTATCTCTACATAAGATCATAATTCCGCTATTTATGCCTCAAAAAAATTCTAAAATTCCAGCCCAAAATCTCTGCCCATCCCTCGGTTGCCAAGCCGGATGTCATCCATCCCCTCACGGAGGAGAATGCACCTGTCCATCTGGATACAAACTCGACGACCGTTTCCATCGCACTTGTTCCGATATCAATGAGTGTGCTGAGTTTGGCTACTGTGACCAGCTATGCGCGAACCATCGCCCCGGCTTCACATGCTCTTGTMTTGGAGACTGTTTCACACTTCAAATGGATCATGGACCAGGAAAGGATAATCTGACGATGAGAGGTTACTGTATCTCGAATAATGCTGATAAAATGAAATTGTTCGTGGCGAGAAGAGAGGGTCTGTATCGATTGAATCCAAAGAATCCAGATGAAGAGGTTAAGAAGTTGGCTTCTGGAGAGTTCATTTATGGAATTGATTTCGATTATGGAGATCGAAAAATCTTCTGGACTGATCGATTGGCACACTCGGCGTTTAGTGCTGACGTCGATGATGAAGGAGAAATTTCACAGATTAAGTGAGCTCAACAACAGAAGCCATCTCCTCTATGTGGTTTTTTTTTCAGGAAGCTCAGCCTCAAATCTCTTGTCTATCCCCGCTGCTTGGCCGTTGACTGGATTACCAACACTTTGTATATTATTGAATCTGGATCCAGAAGAATCGACGTCTCCTCATATGATGGAGATCGGAGAACTGTTCTTCTTGCCGATGGACTCACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATCAATGAGTGTGCTGAGTTT</pcr_primer_p1>
		<pcr_primer_p2>CAACTTCTTAACCTCTTCATCTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATATCAATGAGTGTGCTGAGTTTGGCTACTGTGACCAGCTATGCGCGAACCATCGCCCCGGCTTCACATGCTCTTGTCTTGGAGACTGTTTCACACTTCAAATGGATCATGGACCAGGAAAGGATAATCTGACGATGAGAGGTTACTGTATCTCGAATAATGCTGATAAAATGAAATTGTTCGTGGCGAGAAGAGAGGGTCTGTATCGATTGAATCCAAAGAATCCAGATGAAGAGGTTAAGAAGTTG</canonical_amplicon>
		<polymorphic_amplicon>ATATCAATGAGTGTGCTGAGTTTGGCTACTGTGACCAGCTATGCGCGAACCATCGCCCCGGCTTCACATGCTCTTGTMTTGGAGACTGTTTCACACTTCAAATGGATCATGGACCAGGAAAGGATAATCTGACGATGAGAGGTTACTGTATCTCGAATAATGCTGATAAAATGAAATTGTTCGTGGCGAGAAGAGAGGGTCTGTATCGATTGAATCCAAAGAATCCAGATGAAGAGGTTAAGAAGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26556</snp_id>
        <super_contig>c002500822.Contig1</super_contig>
        <contig_pos>80568</contig_pos>
        <strand>+</strand>
        <context>ATTTTTCAAA[C/T]TAATACAAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAAAAAAACTCTTTTCATTTTTTTATCAAATTTTTGGCATTTTTCAAA</left_flank>
        <right_flank>TAATACAAACAAAACAAATGAAAGGAATAGGCGACAAGGGGCTCCCGAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGAGACAAAAGAAGAGAGGAAGGGATTTGGAGAAGGAAAAAATTCCAGATTCCACGTGGCAATTTTTAGGTGGAAACTCTGGAAGTGAAAAACTAGTAATCGAGAATCTGAAGGTCTTCAGAATCTACGAATATCTTAATATTCTGAAACTAACCGAAATTCTGAAAATTTTTGAAATATTGAAACACAAGAATCCCATGAATCCGAAAAATACTGAATTCCAGAAAATTCCAAAAATCCTTTAAAATTTTCAAAAGTCCTAGAACACCTGGAAAACCCAAAAATTCTAAAAATTCAAGTAATCCGAAAAATCTTCAAAATTCCAAAAACCCTTCTAATTTCCACAAATTCCGAAAATCCCAAGAATTCTGAGAAATTTCACAAAAATCCCGGAAATCTTTTAAAAATTCTTCAAAATGTCTAAAATCACAAAAGAATCTAAAAATTTGAAAAAAAACTCTTTTCATTTTTTTATCAAATTTTTGGCATTTTTCAAACTAATACAAACAAAACAAATGAAAGGAATAGGCGACAAGGGGCTCCCGAGGAATTAGGAGCCAGATATATCATGTGAGAGAAGAAACGAAAACAAAAATTTTGGAAAAACAAAGAAACGACAAACATCTTTCAAAAGAATAGGAGGGAATTGTTATGCGAAATAAATAATATTTTTTAATTATTTTTCGAAGATTGGATGGAAAATGAGAGAAAAAAGAATCGATGGACAAGCACTCTTAGCGAAAAAAAAGAATCTTTTAAAGTTGAAAATCGATGAAAATTCGGTAGGAAACTTGAAAAATAGGGGAAAAAAACTGTTTTTGAACCGGCGCTAAAAGGAAAACCCAACACTTTACGACACTTTGCGGACAACACAACTTTTCGGCTTGCACTTTTCGGCTTGTACTATTTTTTTTTGAACCTTTTTTAGGCATTTTCAGCTCAAAAAATGTCAAAACGAGGTCAATCATCGTCAATGTCTTACAAAGACAAAGTAAGTC</canonical>
            <polymorphic>TTGGAGACAAAAGAAGAGAGGAAGGGATTTGGAGAAGGAAAAAATTCCAGATTCCACGTGGCAATTTTTAGGTGGAAACTCTGGAAGTGAAAAACTAGTAATCGAGAATCTGAAGGTCTTCAGAATCTACGAATATCTTAATATTCTGAAACTAACCGAAATTCTGAAAATTTTTGAAATATTGAAACACAAGAATCCCATGAATCCGAAAAATACTGAATTCCAGAAAATTCCAAAAATCCTTTAAAATTTTCAAAAGTCCTAGAACACCTGGAAAACCCAAAAATTCTAAAAATTCAAGTAATCCGAAAAATCTTCAAAATTCCAAAAACCCTTCTAATTTCCACAAATTCCGAAAATCCCAAGAATTCTGAGAAATTTCACAAAAATCCCGGAAATCTTTTAAAAATTCTTCAAAATGTCTAAAATCACAAAAGAATCTAAAAATTTGAAAAAAAACTCTTTTCATTTTTTTATCAAATTTTTGGCATTTTTCAAAYTAATACAAACAAAACAAATGAAAGGAATAGGCGACAAGGGGCTCCCGAGGAATTAGGAGCCAGATATATCATGTGAGAGAAGAAACGAAAACAAAAATTTTGGAAAAACAAAGAAACGACAAACATCTTTCAAAAGAATAGGAGGGAATTGTTATGCGAAATAAATAATATTTTTTAATTATTTTTCGAAGATTGGATGGAAAATGAGAGAAAAAAGAATCGATGGACAAGCACTCTTAGCGAAAAAAAAGAATCTTTTAAAGTTGAAAATCGATGAAAATTCGGTAGGAAACTTGAAAAATAGGGGAAAAAAACTGTTTTTGAACCGGCGCTAAAAGGAAAACCCAACACTTTACGACACTTTGCGGACAACACAACTTTTCGGCTTGCACTTTTCGGCTTGTACTATTTTTTTTTGAACCTTTTTTAGGCATTTTCAGCTCAAAAAATGTCAAAACGAGGTCAATCATCGTCAATGTCTTACAAAGACAAAGTAAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCCAAAAACCCTTCTAAT</pcr_primer_p1>
		<pcr_primer_p2>ATATATCTGGCTCCTAATTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTCCAAAAACCCTTCTAATTTCCACAAATTCCGAAAATCCCAAGAATTCTGAGAAATTTCACAAAAATCCCGGAAATCTTTTAAAAATTCTTCAAAATGTCTAAAATCACAAAAGAATCTAAAAATTTGAAAAAAAACTCTTTTCATTTTTTTATCAAATTTTTGGCATTTTTCAAACTAATACAAACAAAACAAATGAAAGGAATAGGCGACAAGGGGCTCCCGAGGAATTAGGAGCCAGATATAT</canonical_amplicon>
		<polymorphic_amplicon>AAATTCCAAAAACCCTTCTAATTTCCACAAATTCCGAAAATCCCAAGAATTCTGAGAAATTTCACAAAAATCCCGGAAATCTTTTAAAAATTCTTCAAAATGTCTAAAATCACAAAAGAATCTAAAAATTTGAAAAAAAACTCTTTTCATTTTTTTATCAAATTTTTGGCATTTTTCAAAYTAATACAAACAAAACAAATGAAAGGAATAGGCGACAAGGGGCTCCCGAGGAATTAGGAGCCAGATATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26557</snp_id>
        <super_contig>c002500822.Contig1</super_contig>
        <contig_pos>122143</contig_pos>
        <strand>+</strand>
        <context>AAGTGATTTA[C/G]CGCCCCGACA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACTGAATACAACACCTTGACCAAGAGACCAAGTCGTATGCAAGTGATTTA</left_flank>
        <right_flank>CGCCCCGACATTGAACCAGAGTGATCTGGCGTTGGCAAGCTTCGCAGAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCGACCACCGTTTGCCGCTAACCAAAAAGCCAAGTGTGTGCACGGGAGAGGAGGGTGACATGTTGCTTATTTATCATTATCTATCGAGGCGCGAGGGTCAAAATTACAGTACCCTGCGAAATCATCATTTATAGACGCACAAAACAAAACTGTCGTTCGAGTGTCGAAAAGAAAAGAAAAATTTGCGATTTTGATTCCCCTTCAAAAAAATTAATAAAGAAACAAAATTTGATGAACGGGGTGCAAAAAAACGTCGTATAGTCTCAACAGATAGCCTCACAGAAGCGCACGGAACCCTACACCCGAAAACCTACAAAACCTACAGAAAAACCTACGAAAAAATCAGTCACGGTTTTTGGACTTATGCAAAAAAAAAAGGAAAAAAAGGGAAACAAAAAACTCAATCAAAGGATAGTCTCAACAGATCGCAGTATAAGAGGACTGCTCTACTGAATACAACACCTTGACCAAGAGACCAAGTCGTATGCAAGTGATTTAGCGCCCCGACATTGAACCAGAGTGATCTGGCGTTGGCAAGCTTCGCAGAGTTCACTACGAAGCCAAGGCCATACATAGGGCATAAGCTCTCGTGTTGCCACGAGATAGAGATGCCTCCCGACACCGGGAAGCAAGAAATTTTCGCCTTGACAAGGCGAGATTCTAACTTAGAGGCGTTCAGTTATAATCTCTCAAATGGTAGCTTCAGACCATTGATCTGTCGATCAAGTCTATGAACCAAATGTTTGAACCCGCTGTTCCTCTCGTACTAAGCAGGATTACTTTCGCAATAACAAGTCAACAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTTCGCATGATAGGAAGAGCCGACATCGAAGGATCAAAAAAGCACGTCGCTATGGAC</canonical>
            <polymorphic>GCCGACCACCGTTTGCCGCTAACCAAAAAGCCAAGTGTGTGCACGGGAGAGGAGGGTGACATGTTGCTTATTTATCATTATCTATCGAGGCGCGAGGGTCAAAATTACAGTACCCTGCGAAATCATCATTTATAGACGCACAAAACAAAACTGTCGTTCGAGTGTCGAAAAGAAAAGAAAAATTTGCGATTTTGATTCCCCTTCAAAAAAATTAATAAAGAAACAAAATTTGATGAACGGGGTGCAAAAAAACGTCGTATAGTCTCAACAGATAGCCTCACAGAAGCGCACGGAACCCTACACCCGAAAACCTACAAAACCTACAGAAAAACCTACGAAAAAATCAGTCACGGTTTTTGGACTTATGCAAAAAAAAAAGGAAAAAAAGGGAAACAAAAAACTCAATCAAAGGATAGTCTCAACAGATCGCAGTATAAGAGGACTGCTCTACTGAATACAACACCTTGACCAAGAGACCAAGTCGTATGCAAGTGATTTASCGCCCCGACATTGAACCAGAGTGATCTGGCGTTGGCAAGCTTCGCAGAGTTCACTACGAAGCCAAGGCCATACATAGGGCATAAGCTCTCGTGTTGCCACGAGATAGAGATGCCTCCCGACACCGGGAAGCAAGAAATTTTCGCCTTGACAAGGCGAGATTCTAACTTAGAGGCGTTCAGTTATAATCTCTCAAATGGTAGCTTCAGACCATTGATCTGTCGATCAAGTCTATGAACCAAATGTTTGAACCCGCTGTTCCTCTCGTACTAAGCAGGATTACTTTCGCAATAACAAGTCAACAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTTCGCATGATAGGAAGAGCCGACATCGAAGGATCAAAAAAGCACGTCGCTATGGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>448 214 196 92</canonical_bands>
                <polymorphic_bands>662 196 92</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>503 447</canonical_bands>
                <polymorphic_bands>950</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTGCTCTACTGAATACAACACC</pcr_primer_p1>
		<pcr_primer_p2>AGAGATTATAACTGAACGCCTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTGCTCTACTGAATACAACACCTTGACCAAGAGACCAAGTCGTATGCAAGTGATTTAGCGCCCCGACATTGAACCAGAGTGATCTGGCGTTGGCAAGCTTCGCAGAGTTCACTACGAAGCCAAGGCCATACATAGGGCATAAGCTCTCGTGTTGCCACGAGATAGAGATGCCTCCCGACACCGGGAAGCAAGAAATTTTCGCCTTGACAAGGCGAGATTCTAACTTAGAGGCGTTCAGTTATAATCTCT</canonical_amplicon>
		<polymorphic_amplicon>ACTGCTCTACTGAATACAACACCTTGACCAAGAGACCAAGTCGTATGCAAGTGATTTASCGCCCCGACATTGAACCAGAGTGATCTGGCGTTGGCAAGCTTCGCAGAGTTCACTACGAAGCCAAGGCCATACATAGGGCATAAGCTCTCGTGTTGCCACGAGATAGAGATGCCTCCCGACACCGGGAAGCAAGAAATTTTCGCCTTGACAAGGCGAGATTCTAACTTAGAGGCGTTCAGTTATAATCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26558</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>7581</contig_pos>
        <strand></strand>
        <context>cgaaaacagt[G/T]acggttctta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTGAAAATTTATTTTAAAAACACATCTTTGGTCCTGAAGCGAAAACAGT</left_flank>
        <right_flank>ACGGTTCTTACAATTTTATGCGCCTTTTCTCTGTATTTCGAAATTTATTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGCTATTTATCTAATTATGGGAATGGGGAAAAAAAGGAATAGTGAATGAAGTTACGACTGGGTACCGTATACACTCTAATAAAAGGTCCGCTCATACTTGTACTTCAAGATTTTCAGAAAAGATAACAAAAAAACTGCCAACATTATTTTTCATAATATCACCAACATCTTGTTAGTTGAAATATTTTTGATCAAAATTGAGATAATTGAGCTCACAGTGAAGTATAGAGTGGGCTTCTATTATTAGAGCAGTTATGGTAAGTAATTTAGGGTTCATTAGAAGAGACCAAAAATAATAAATACTCTAGTAATGTAATTTTCGTAAACGAATAAAGATTTTGAGATATTCATATTTCGTACTTTTGAGAATTGGAGACTGCCAAGATATTAGATTTCTAATTTTAAAGATTCTCACTAATACTCTTGTCCGGCACCAATGAACCGTGTGGTTGAAAATTTATTTTAAAAACACATCTTTGGTCCTGAAGCGAAAACAGTGACGGTTCTTACAATTTTATGCGCCTTTTCTCTGTATTTCGAAATTTATTTATAGGCTAAAAAAACAATTTCAAAATACTGAACAAAAGACGAATGAATTTATCTGTAAAAGCCGTAGCTGCGTTTGCTTCAGGACCGACAATGCGCCTTTAAATGAGTATTTAACTATAACGTTCATCGACGTCGGAAAAGAATAATTACAGAATCGAATTCAGGATTTAAAGCAAATCAGTCAAAACATAAGTAAAGGGAACAGTAAAATGGTGGAAGGAAAGATGAGCTCATTTCAACATAACTGAGTAAATGAATAATACAACTGTCTCTAGGGCGTGTCTTTACCCCAAACCAGGTGGGATTGGATCACATCAATCTATGGGAAGTCTGTACGAAGAAACGACCGGGCACTCAAGACATTATATGTTTACTGATGGACAAGGTGAAGGAAAGCTATTCCACTAATTAAGGGAATGGGAAAAACGAATATCAATTGATATTATAATG</canonical>
            <polymorphic>GAGCTATTTATCTAATTATGGGAATGGGGAAAAAAAGGAATAGTGAATGAAGTTACGACTGGGTACCGTATACACTCTAATAAAAGGTCCGCTCATACTTGTACTTCAAGATTTTCAGAAAAGATAACAAAAAAACTGCCAACATTATTTTTCATAATATCACCAACATCTTGTTAGTTGAAATATTTTTGATCAAAATTGAGATAATTGAGCTCACAGTGAAGTATAGAGTGGGCTTCTATTATTAGAGCAGTTATGGTAAGTAATTTAGGGTTCATTAGAAGAGACCAAAAATAATAAATACTCTAGTAATGTAATTTTCGTAAACGAATAAAGATTTTGAGATATTCATATTTCGTACTTTTGAGAATTGGAGACTGCCAAGATATTAGATTTCTAATTTTAAAGATTCTCACTAATACTCTTGTCCGGCACCAATGAACCGTGTGGTTGAAAATTTATTTTAAAAACACATCTTTGGTCCTGAAGCGAAAACAGTKACGGTTCTTACAATTTTATGCGCCTTTTCTCTGTATTTCGAAATTTATTTATAGGCTAAAAAAACAATTTCAAAATACTGAACAAAAGACGAATGAATTTATCTGTAAAAGCCGTAGCTGCGTTTGCTTCAGGACCGACAATGCGCCTTTAAATGAGTATTTAACTATAACGTTCATCGACGTCGGAAAAGAATAATTACAGAATCGAATTCAGGATTTAAAGCAAATCAGTCAAAACATAAGTAAAGGGAACAGTAAAATGGTGGAAGGAAAGATGAGCTCATTTCAACATAACTGAGTAAATGAATAATACAACTGTCTCTAGGGCGTGTCTTTACCCCAAACCAGGTGGGATTGGATCACATCAATCTATGGGAAGTCTGTACGAAGAAACGACCGGGCACTCAAGACATTATATGTTTACTGATGGACAAGGTGAAGGAAAGCTATTCCACTAATTAAGGGAATGGGAAAAACGAATATCAATTGATATTATAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>265 182 88 66 54 46 45 41 35 29 28 23 20 19 16 13 12 11 5 2</canonical_bands>
                <polymorphic_bands>293 182 88 66 54 46 45 41 35 29 23 20 19 16 13 12 11 5 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATATTTCGTACTTTTGAGAATTG</pcr_primer_p1>
		<pcr_primer_p2>TGATTTGCTTTAAATCCTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>381</pcr_amplicon_size>
		<canonical_amplicon>CATATTTCGTACTTTTGAGAATTGGAGACTGCCAAGATATTAGATTTCTAATTTTAAAGATTCTCACTAATACTCTTGTCCGGCACCAATGAACCGTGTGGTTGAAAATTTATTTTAAAAACACATCTTTGGTCCTGAAGCGAAAACAGTGACGGTTCTTACAATTTTATGCGCCTTTTCTCTGTATTTCGAAATTTATTTATAGGCTAAAAAAACAATTTCAAAATACTGAACAAAAGACGAATGAATTTATCTGTAAAAGCCGTAGCTGCGTTTGCTTCAGGACCGACAATGCGCCTTTAAATGAGTATTTAACTATAACGTTCATCGACGTCGGAAAAGAATAATTACAGAATCGAATTCAGGATTTAAAGCAAATCA</canonical_amplicon>
		<polymorphic_amplicon>CATATTTCGTACTTTTGAGAATTGGAGACTGCCAAGATATTAGATTTCTAATTTTAAAGATTCTCACTAATACTCTTGTCCGGCACCAATGAACCGTGTGGTTGAAAATTTATTTTAAAAACACATCTTTGGTCCTGAAGCGAAAACAGTKACGGTTCTTACAATTTTATGCGCCTTTTCTCTGTATTTCGAAATTTATTTATAGGCTAAAAAAACAATTTCAAAATACTGAACAAAAGACGAATGAATTTATCTGTAAAAGCCGTAGCTGCGTTTGCTTCAGGACCGACAATGCGCCTTTAAATGAGTATTTAACTATAACGTTCATCGACGTCGGAAAAGAATAATTACAGAATCGAATTCAGGATTTAAAGCAAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26559</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>10316</contig_pos>
        <strand>+</strand>
        <context>GCAATAATTT[A/T]AAAAAAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTTTTTTATTCTTTCTTCATGCAACCTTGAAATATGATTGCAATAATTT</left_flank>
        <right_flank>AAAAAAAATTCAGTTAAATATGTCTGGTGATCCTTCAATCTCCGAATCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCTTTAAAATTAGATGATATACACAACTTTTTTCCAAAAAAAAAGCAAGCTATTTTAAATTTCGAAGCTGGCACCGACTGTCCGGGCCTTCCGGGCCGGGCCGGGCCTTGACCATCTTTTTGAAGACACGGCCCGTAGCAAGTATGAAGAGAATCATATTCCAAGAAAGGAATTATCCTTTAATTTTCACGTTTTTCTGATTTTCCTTTTGAAAGAAGACAAATTGTTGTTTGTTGTTCTTTATCTCGAAACTACATTTTTTGATACAAATGGCACGCTTGGACAGAGCAAGAATCCCATGGATTTTGAGAATATTTGGATCAAAAGTCATTTTCTCATTCTGATCAGTGCATTTTTCACGCTCTCATTTTCCTTTTGAAAAAAAATTCAGTTTATTTTTAGAGAGGAATTGATTTTCCGAAAAAAATTTCATGAATGTATCCTTTCTCTTTTTTATTCTTTCTTCATGCAACCTTGAAATATGATTGCAATAATTTAAAAAAAAATTCAGTTAAATATGTCTGGTGATCCTTCAATCTCCGAATCTGACAAATCCGATCGAAATCTCAGCAATGAGGAGTCTGAAAAATGCACCGATGGTCTTCAATCAGAATTACAAAAAGACGTAGAACTGAAAATTCTTCGCAACGCCTTCACAAGCAAAACACAAACTATATCCCAACTGGAAGAGCAATTTATCGAACTCAATAGAATGGACGAACGTCAGAAGATGCAAATCGCTTCGCAGAAGAAACAAATTGCAGTTCTGACAATAACTAGGCAGGTTTGTAGCCATTTATTTTTCGAGAAAATCTGTAGGATTCTTTTAAGAAAATTCGGGAAAAATAAATTTTTGGACGCTTTTGAAAAACGTTTAGAAAGCAACAACCACCCATAGGTCGAGAAAAACGGGAAAAAATTAATTGAAAACCTAATGTCCCGTTTTCTTCCAAACTCTTCAAGAATTGCTGAATAATGATTTTGGAAACAATATTCGG</canonical>
            <polymorphic>CTCCTTTAAAATTAGATGATATACACAACTTTTTTCCAAAAAAAAAGCAAGCTATTTTAAATTTCGAAGCTGGCACCGACTGTCCGGGCCTTCCGGGCCGGGCCGGGCCTTGACCATCTTTTTGAAGACACGGCCCGTAGCAAGTATGAAGAGAATCATATTCCAAGAAAGGAATTATCCTTTAATTTTCACGTTTTTCTGATTTTCCTTTTGAAAGAAGACAAATTGTTGTTTGTTGTTCTTTATCTCGAAACTACATTTTTTGATACAAATGGCACGCTTGGACAGAGCAAGAATCCCATGGATTTTGAGAATATTTGGATCAAAAGTCATTTTCTCATTCTGATCAGTGCATTTTTCACGCTCTCATTTTCCTTTTGAAAAAAAATTCAGTTTATTTTTAGAGAGGAATTGATTTTCCGAAAAAAATTTCATGAATGTATCCTTTCTCTTTTTTATTCTTTCTTCATGCAACCTTGAAATATGATTGCAATAATTTWAAAAAAAATTCAGTTAAATATGTCTGGTGATCCTTCAATCTCCGAATCTGACAAATCCGATCGAAATCTCAGCAATGAGGAGTCTGAAAAATGCACCGATGGTCTTCAATCAGAATTACAAAAAGACGTAGAACTGAAAATTCTTCGCAACGCCTTCACAAGCAAAACACAAACTATATCCCAACTGGAAGAGCAATTTATCGAACTCAATAGAATGGACGAACGTCAGAAGATGCAAATCGCTTCGCAGAAGAAACAAATTGCAGTTCTGACAATAACTAGGCAGGTTTGTAGCCATTTATTTTTCGAGAAAATCTGTAGGATTCTTTTAAGAAAATTCGGGAAAAATAAATTTTTGGACGCTTTTGAAAAACGTTTAGAAAGCAACAACCACCCATAGGTCGAGAAAAACGGGAAAAAATTAATTGAAAACCTAATGTCCCGTTTTCTTCCAAACTCTTCAAGAATTGCTGAATAATGATTTTGGAAACAATATTCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 441 51 7</canonical_bands>
                <polymorphic_bands>942 51 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>316 315 125 93 78 51 16 6</canonical_bands>
                <polymorphic_bands>332 315 125 93 78 51 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTTGGATCAAAAGTCATTTTC</pcr_primer_p1>
		<pcr_primer_p2>GATTTGTCAGATTCGGAGATT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TATTTGGATCAAAAGTCATTTTCTCATTCTGATCAGTGCATTTTTCACGCTCTCATTTTCCTTTTGAAAAAAAATTCAGTTTATTTTTAGAGAGGAATTGATTTTCCGAAAAAAATTTCATGAATGTATCCTTTCTCTTTTTTATTCTTTCTTCATGCAACCTTGAAATATGATTGCAATAATTTAAAAAAAAATTCAGTTAAATATGTCTGGTGATCCTTCAATCTCCGAATCTGACAAATC</canonical_amplicon>
		<polymorphic_amplicon>TATTTGGATCAAAAGTCATTTTCTCATTCTGATCAGTGCATTTTTCACGCTCTCATTTTCCTTTTGAAAAAAAATTCAGTTTATTTTTAGAGAGGAATTGATTTTCCGAAAAAAATTTCATGAATGTATCCTTTCTCTTTTTTATTCTTTCTTCATGCAACCTTGAAATATGATTGCAATAATTTWAAAAAAAATTCAGTTAAATATGTCTGGTGATCCTTCAATCTCCGAATCTGACAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26560</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>28948</contig_pos>
        <strand>+</strand>
        <context>AAAWAATAAG[A/G]TAAACACTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTCCAGAAATTACAATAAAAATTTTTCTGGAATCAAAGAAATAATAAG</left_flank>
        <right_flank>TAAACACTTACTGTTTGCTGAGATGAAGAGGTTCTCCGGTTTTATATCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACTTCCGAATATGATCAAACAGGTCAAAAATCAACTGAAAATTTTTTCGTATATTTTAACGACCGGTACTGTAAGTACATCGAATCCCAATAAAAAAGTTCTGATCCATTAGTTAGCGGAAAACTTAGCTCTCCACAGCATCCTTCCACGGCTCTTTTTTTGTGATCATATTCACCAACACGATTCCAGCAGCCCAGACGTCTACAGGAGGTCCTCTCCATCTTGCATTTTCCACTAAGATTTCAGGGGCCATGTAACCATGTGTTCCGCGTTTTCTATCCAGCATAATTTCATCTCCGTTGTCAGTTTTGCATGATCTTGCGAATCCAAAGTCGCCAATCTTGAGCACATCTGCAATAATACATGAGGTTTCAATAACAAAATGATTTTTAAGTTCATTTCTTCTATCTTTAGAGAGCATTTTGAAACTAAAACTGGAAAGAACAGATTTCCAGAAATTACAATAAAAATTTTTCTGGAATCAAAGAAATAATAAGATAAACACTTACTGTTTGCTGAGATGAAGAGGTTCTCCGGTTTTATATCGAGATGGATAATATCTTTTGAATGCATGTGTTGGAGTCCGGCGATCAAATGTTTGAAGAACCGGTGATACGGGACTGCGGACGGAGATTCAAAGATTAGGTGGAACAGATCGCCCATCGAAGCGAGCTCCATGAAGAAAACAGTTTGCAGTTCCACATTCTCCATGGCGAAAATTTTTATGACGTGGTCCGCTCCTTCGCTTGCCTTCATGTGTGACGAGAATTCCCGTTCGCTTCGGTGCGCGTCGTGCTTTATTGTTTTCATCGCAATTTGATTCTTCTCGGGATTGTTGTCAACTTTTTCCACCACCGAAACGGAGCCGAAATTTCCCGAAGTCAAGTCTCTGCGCCAGTTATAGCCGAGAAGGGGAGCGAGTTGTTGATTGGAAAGCATCTGAAAGTGGAGTTTATTGAATAAAGCAATGAGTTTAAAAATTAGGTGTTTTCCTTAAA</canonical>
            <polymorphic>AGACTTCCGAATATGATCAAACAGGTCAAAAATCAACTGAAAATTTTTTCGTATATTTTAACGACCGGTACTGTAAGTACATCGAATCCCAATAAAAAAGTTCTGATCCATTAGTTAGCGGAAAACTTAGCTCTCCACAGCATCCTTCCACGGCTCTTTTTTTGTGATCATATTCACCAACACGATTCCAGCAGCCCAGACGTCTACAGGAGGTCCTCTCCATCTTGCATTTTCCACTAAGATTTCAGGGGCCATGTAACCATGTGTTCCGCGTTTTCTATCCAGCATAATTTCATCTCCGTTGTCAGTTTTGCATGATCTTGCGAATCCAAAGTCGCCAATCTTGAGCACATCTGCAATAATACATGAGGTTTCAATAACAAAATGATTTTTAAGTTCATTTCTTCTATCTTTAGAGAGCATTTTGAAACTAAAACTGGAAAGAACAGATTTCCAGAAATTACAATAAAAATTTTTCTGGAATCAAAGAAATAATAAGRTAAACACTTACTGTTTGCTGAGATGAAGAGGTTCTCCGGTTTTATATCGAGATGGATAATATCTTTTGAATGCATGTGTTGGAGTCCGGCGATCAAATGTTTGAAGAACCGGTGATACGGGACTGCGGACGGAGATTCAAAGATTAGGTGGAACAGATCGCCCATCGAAGCGAGCTCCATGAAGAAAACAGTTTGCAGTTCCACATTCTCCATGGCGAAAATTTTTATGACGTGGTCCGCTCCTTCGCTTGCCTTCATGTGTGACGAGAATTCCCGTTCGCTTCGGTGCGCGTCGTGCTTTATTGTTTTCATCGCAATTTGATTCTTCTCGGGATTGTTGTCAACTTTTTCCACCACCGAAACGGAGCCGAAATTTCCCGAAGTCAAGTCTCTGCGCCAGTTATAGCCGAGAAGGGGAGCGAGTTGTTGATTGGAAAGCATCTGAAAGTGGAGTTTATTGAATAAAGCAATGAGTTTAAAAATTAGGTGTTTTCCTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTATCTTTAGAGAGCATTTTGA</pcr_primer_p1>
		<pcr_primer_p2>GTTCCACCTAATCTTTGAATCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTATCTTTAGAGAGCATTTTGAAACTAAAACTGGAAAGAACAGATTTCCAGAAATTACAATAAAAATTTTTCTGGAATCAAAGAAATAATAAGATAAACACTTACTGTTTGCTGAGATGAAGAGGTTCTCCGGTTTTATATCGAGATGGATAATATCTTTTGAATGCATGTGTTGGAGTCCGGCGATCAAATGTTTGAAGAACCGGTGATACGGGACTGCGGACGGAGATTCAAAGATTAGGTGGAAC</canonical_amplicon>
		<polymorphic_amplicon>TTCTATCTTTAGAGAGCATTTTGAAACTAAAACTGGAAAGAACAGATTTCCAGAAATTACAATAAAAATTTTTCTGGAATCAAAGAAATAATAAGRTAAACACTTACTGTTTGCTGAGATGAAGAGGTTCTCCGGTTTTATATCGAGATGGATAATATCTTTTGAATGCATGTGTTGGAGTCCGGCGATCAAATGTTTGAAGAACCGGTGATACGGGACTGCGGACGGAGATTCAAAGATTAGGTGGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26561</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>30951</contig_pos>
        <strand>+</strand>
        <context>CAGATCTTCT[G/T]TTAGTCTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATCAAAGAAGGCGGGAACTTATTTTGAGTGATTTGATGACAGATCTTCT</left_flank>
        <right_flank>TTAGTCTTTTTAACCGTATTTTACATGGTTTCAATACAAAAAATTACAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACTAGCCAATGGGAAAAAGGCTGAGAAAATGACGAAATGAAAAAACCATGCTGAGAAATGAGAACACAAAAACGAACATCCGTGTACGCATAGAGTATGCGTCACGTGCAAAAAAAAAATATGAAGAAGGGCTTAATTTAGTATGAAAGACAGTTTTGAGAAAACAGGGTCGAGCTCACAATTCCAAAACAACTGATTATGATCAATTTCCATGTTTGATTAATGGATATCATATTTGCTCTGATAAAAGCTCAACCTTTCCCAAGATTTTAAGCTCAATTATATCAGTTCGTTGAAGAGTTATCAAAAGTGATCAACTGGTAAAGTGTTTATCATATTATCTCCAACATTTTTCTCAATTGAAAACTTTTTGGTATGATTTATGACAACCGAGATAATCAAACTTAGAGAGGGCGTCGGCTTCTGTTGGAGCAAACACGGGATTGTAATCAAAGAAGGCGGGAACTTATTTTGAGTGATTTGATGACAGATCTTCTGTTAGTCTTTTTAACCGTATTTTACATGGTTTCAATACAAAAAATTACAGTAACCTTTGAAATCTGACAAGAACCTCAAACTTATGCTTTTTTAACCGGTATTTGGCAGTGGAAAGGACCTTTGATCGGCTTTTAACCAGCTCGAAATGTCGGAAAGATTATTTGAAAAGATAATGAAAAAAACTTATCACAATTTTCATCTAAAGTTGTACTTGTGTGTTGCGTGCTTGTCTTGATCCTGAGACTGCTGATAAAATCTGGAAGTGTTGATTCAAGACGAACCATTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTATTTTTTTTTGAAAGAAGATTAAAAGACATTCGAATTTTTCGAAAACAAAGGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCAAAAATAATTTATTGTTTTTTTTTTCCGATATTCAAATCGTGTTTAAATTTGTTTCAATTCTGCATTC</canonical>
            <polymorphic>CAACTAGCCAATGGGAAAAAGGCTGAGAAAATGACGAAATGAAAAAACCATGCTGAGAAATGAGAACACAAAAACGAACATCCGTGTACGCATAGAGTATGCGTCACGTGCAAAAAAAAAATATGAAGAAGGGCTTAATTTAGTATGAAAGACAGTTTTGAGAAAACAGGGTCGAGCTCACAATTCCAAAACAACTGATTATGATCAATTTCCATGTTTGATTAATGGATATCATATTTGCTCTGATAAAAGCTCAACCTTTCCCAAGATTTTAAGCTCAATTATATCAGTTCGTTGAAGAGTTATCAAAAGTGATCAACTGGTAAAGTGTTTATCATATTATCTCCAACATTTTTCTCAATTGAAAACTTTTTGGTATGATTTATGACAACCGAGATAATCAAACTTAGAGAGGGCGTCGGCTTCTGTTGGAGCAAACACGGGATTGTAATCAAAGAAGGCGGGAACTTATTTTGAGTGATTTGATGACAGATCTTCTKTTAGTCTTTTTAACCGTATTTTACATGGTTTCAATACAAAAAATTACAGTAACCTTTGAAATCTGACAAGAACCTCAAACTTATGCTTTTTTAACCGGTATTTGGCAGTGGAAAGGACCTTTGATCGGCTTTTAACCAGCTCGAAATGTCGGAAAGATTATTTGAAAAGATAATGAAAAAAACTTATCACAATTTTCATCTAAAGTTGTACTTGTGTGTTGCGTGCTTGTCTTGATCCTGAGACTGCTGATAAAATCTGGAAGTGTTGATTCAAGACGAACCATTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTATTTTTTTTTGAAAGAAGATTAAAAGACATTCGAATTTTTCGAAAACAAAGGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCAAAAATAATTTATTGTTTTTTTTTTCCGATATTCAAATCGTGTTTAAATTTGTTTCAATTCTGCATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACACGGGATTGTAATCAA</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAATAATCTTTCCGACAT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>AAACACGGGATTGTAATCAAAGAAGGCGGGAACTTATTTTGAGTGATTTGATGACAGATCTTCTGTTAGTCTTTTTAACCGTATTTTACATGGTTTCAATACAAAAAATTACAGTAACCTTTGAAATCTGACAAGAACCTCAAACTTATGCTTTTTTAACCGGTATTTGGCAGTGGAAAGGACCTTTGATCGGCTTTTAACCAGCTCGAAATGTCGGAAAGATTATTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>AAACACGGGATTGTAATCAAAGAAGGCGGGAACTTATTTTGAGTGATTTGATGACAGATCTTCTKTTAGTCTTTTTAACCGTATTTTACATGGTTTCAATACAAAAAATTACAGTAACCTTTGAAATCTGACAAGAACCTCAAACTTATGCTTTTTTAACCGGTATTTGGCAGTGGAAAGGACCTTTGATCGGCTTTTAACCAGCTCGAAATGTCGGAAAGATTATTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26562</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>31285</contig_pos>
        <strand>+</strand>
        <context>AAAAAGAGTA[A/C]TTTTTTTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTA</left_flank>
        <right_flank>TTTTTTTTGAAAGAAGATTAAAAGACATTCGAATTTTTCGAAAACAAAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATATTATCTCCAACATTTTTCTCAATTGAAAACTTTTTGGTATGATTTATGACAACCGAGATAATCAAACTTAGAGAGGGCGTCGGCTTCTGTTGGAGCAAACACGGGATTGTAATCAAAGAAGGCGGGAACTTATTTTGAGTGATTTGATGACAGATCTTCTGTTAGTCTTTTTAACCGTATTTTACATGGTTTCAATACAAAAAATTACAGTAACCTTTGAAATCTGACAAGAACCTCAAACTTATGCTTTTTTAACCGGTATTTGGCAGTGGAAAGGACCTTTGATCGGCTTTTAACCAGCTCGAAATGTCGGAAAGATTATTTGAAAAGATAATGAAAAAAACTTATCACAATTTTCATCTAAAGTTGTACTTGTGTGTTGCGTGCTTGTCTTGATCCTGAGACTGCTGATAAAATCTGGAAGTGTTGATTCAAGACGAACCATTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTATTTTTTTTTGAAAGAAGATTAAAAGACATTCGAATTTTTCGAAAACAAAGGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCAAAAATAATTTATTGTTTTTTTTTTCCGATATTCAAATCGTGTTTAAATTTGTTTCAATTCTGCATTCATCTGATAAAAATTGAATCTTTTCTGCTGGTTTTCTTTAAGAATTAAAACTTTGTTGCGCAGTTTAAATTAAACTTTTTATAATAATCACATTTTTAGTTATTTTATTTAAATCTTATCACATGCTTTTGGAAAACAGACGATGCAGAACTCGTCCAAAAAACCTCAAAGATTGTGTTCAGAAGAAAACCTCTGTTTTAAATTACCGCGCTTGTTTTTCGGCGGATGGCCTAGAAACCTTCCCGCTCTTCCATCCCCTTTTTTCTTAATGAAAAGGCATAACGAGATCATTTAAGTGAATTTTATCAGATTTTCACCAGATTTTGGTCGCCTTT</canonical>
            <polymorphic>TCATATTATCTCCAACATTTTTCTCAATTGAAAACTTTTTGGTATGATTTATGACAACCGAGATAATCAAACTTAGAGAGGGCGTCGGCTTCTGTTGGAGCAAACACGGGATTGTAATCAAAGAAGGCGGGAACTTATTTTGAGTGATTTGATGACAGATCTTCTGTTAGTCTTTTTAACCGTATTTTACATGGTTTCAATACAAAAAATTACAGTAACCTTTGAAATCTGACAAGAACCTCAAACTTATGCTTTTTTAACCGGTATTTGGCAGTGGAAAGGACCTTTGATCGGCTTTTAACCAGCTCGAAATGTCGGAAAGATTATTTGAAAAGATAATGAAAAAAACTTATCACAATTTTCATCTAAAGTTGTACTTGTGTGTTGCGTGCTTGTCTTGATCCTGAGACTGCTGATAAAATCTGGAAGTGTTGATTCAAGACGAACCATTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTAMTTTTTTTTGAAAGAAGATTAAAAGACATTCGAATTTTTCGAAAACAAAGGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCAAAAATAATTTATTGTTTTTTTTTTCCGATATTCAAATCGTGTTTAAATTTGTTTCAATTCTGCATTCATCTGATAAAAATTGAATCTTTTCTGCTGGTTTTCTTTAAGAATTAAAACTTTGTTGCGCAGTTTAAATTAAACTTTTTATAATAATCACATTTTTAGTTATTTTATTTAAATCTTATCACATGCTTTTGGAAAACAGACGATGCAGAACTCGTCCAAAAAACCTCAAAGATTGTGTTCAGAAGAAAACCTCTGTTTTAAATTACCGCGCTTGTTTTTCGGCGGATGGCCTAGAAACCTTCCCGCTCTTCCATCCCCTTTTTTCTTAATGAAAAGGCATAACGAGATCATTTAAGTGAATTTTATCAGATTTTCACCAGATTTTGGTCGCCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATAAAATCTGGAAGTGTTGAT</pcr_primer_p1>
		<pcr_primer_p2>ATTGAAACAAATTTAAACACGAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TGATAAAATCTGGAAGTGTTGATTCAAGACGAACCATTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTATTTTTTTTTGAAAGAAGATTAAAAGACATTCGAATTTTTCGAAAACAAAGGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCAAAAATAATTTATTGTTTTTTTTTTCCGATATTCAAATCGTGTTTAAATTTGTTTCAAT</canonical_amplicon>
		<polymorphic_amplicon>TGATAAAATCTGGAAGTGTTGATTCAAGACGAACCATTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTAMTTTTTTTTGAAAGAAGATTAAAAGACATTCGAATTTTTCGAAAACAAAGGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCAAAAATAATTTATTGTTTTTTTTTTCCGATATTCAAATCGTGTTTAAATTTGTTTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26563</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>31326</contig_pos>
        <strand>+</strand>
        <context>GAATTTTTCG[A/G]AAAMAAARGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAGAGTATTTTTTTTTGAAAGAAGATTAAAAGACATTCGAATTTTTCG</left_flank>
        <right_flank>AAACAAAGGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATGATTTATGACAACCGAGATAATCAAACTTAGAGAGGGCGTCGGCTTCTGTTGGAGCAAACACGGGATTGTAATCAAAGAAGGCGGGAACTTATTTTGAGTGATTTGATGACAGATCTTCTGTTAGTCTTTTTAACCGTATTTTACATGGTTTCAATACAAAAAATTACAGTAACCTTTGAAATCTGACAAGAACCTCAAACTTATGCTTTTTTAACCGGTATTTGGCAGTGGAAAGGACCTTTGATCGGCTTTTAACCAGCTCGAAATGTCGGAAAGATTATTTGAAAAGATAATGAAAAAAACTTATCACAATTTTCATCTAAAGTTGTACTTGTGTGTTGCGTGCTTGTCTTGATCCTGAGACTGCTGATAAAATCTGGAAGTGTTGATTCAAGACGAACCATTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTATTTTTTTTTGAAAGAAGATTAAAAGACATTCGAATTTTTCGAAAACAAAGGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCAAAAATAATTTATTGTTTTTTTTTTCCGATATTCAAATCGTGTTTAAATTTGTTTCAATTCTGCATTCATCTGATAAAAATTGAATCTTTTCTGCTGGTTTTCTTTAAGAATTAAAACTTTGTTGCGCAGTTTAAATTAAACTTTTTATAATAATCACATTTTTAGTTATTTTATTTAAATCTTATCACATGCTTTTGGAAAACAGACGATGCAGAACTCGTCCAAAAAACCTCAAAGATTGTGTTCAGAAGAAAACCTCTGTTTTAAATTACCGCGCTTGTTTTTCGGCGGATGGCCTAGAAACCTTCCCGCTCTTCCATCCCCTTTTTTCTTAATGAAAAGGCATAACGAGATCATTTAAGTGAATTTTATCAGATTTTCACCAGATTTTGGTCGCCTTTTCTGCGGAAATGTGTCAAAAACAATTTTAAAAGTAAGTTTT</canonical>
            <polymorphic>GTATGATTTATGACAACCGAGATAATCAAACTTAGAGAGGGCGTCGGCTTCTGTTGGAGCAAACACGGGATTGTAATCAAAGAAGGCGGGAACTTATTTTGAGTGATTTGATGACAGATCTTCTGTTAGTCTTTTTAACCGTATTTTACATGGTTTCAATACAAAAAATTACAGTAACCTTTGAAATCTGACAAGAACCTCAAACTTATGCTTTTTTAACCGGTATTTGGCAGTGGAAAGGACCTTTGATCGGCTTTTAACCAGCTCGAAATGTCGGAAAGATTATTTGAAAAGATAATGAAAAAAACTTATCACAATTTTCATCTAAAGTTGTACTTGTGTGTTGCGTGCTTGTCTTGATCCTGAGACTGCTGATAAAATCTGGAAGTGTTGATTCAAGACGAACCATTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTATTTTTTTTTGAAAGAAGATTAAAAGACATTCGAATTTTTCGRAAACAAAGGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCAAAAATAATTTATTGTTTTTTTTTTCCGATATTCAAATCGTGTTTAAATTTGTTTCAATTCTGCATTCATCTGATAAAAATTGAATCTTTTCTGCTGGTTTTCTTTAAGAATTAAAACTTTGTTGCGCAGTTTAAATTAAACTTTTTATAATAATCACATTTTTAGTTATTTTATTTAAATCTTATCACATGCTTTTGGAAAACAGACGATGCAGAACTCGTCCAAAAAACCTCAAAGATTGTGTTCAGAAGAAAACCTCTGTTTTAAATTACCGCGCTTGTTTTTCGGCGGATGGCCTAGAAACCTTCCCGCTCTTCCATCCCCTTTTTTCTTAATGAAAAGGCATAACGAGATCATTTAAGTGAATTTTATCAGATTTTCACCAGATTTTGGTCGCCTTTTCTGCGGAAATGTGTCAAAAACAATTTTAAAAGTAAGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>503 488 9</canonical_bands>
                <polymorphic_bands>512 488</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 267 222 9</canonical_bands>
                <polymorphic_bands>511 267 222</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATAAAATCTGGAAGTGTTGAT</pcr_primer_p1>
		<pcr_primer_p2>ATTGAAACAAATTTAAACACGAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TGATAAAATCTGGAAGTGTTGATTCAAGACGAACCATTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTATTTTTTTTTGAAAGAAGATTAAAAGACATTCGAATTTTTCGAAAACAAAGGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCAAAAATAATTTATTGTTTTTTTTTTCCGATATTCAAATCGTGTTTAAATTTGTTTCAAT</canonical_amplicon>
		<polymorphic_amplicon>TGATAAAATCTGGAAGTGTTGATTCAAGACGAACCATTGTCGTTGCTTTGTGAAATGTACCTGGAAATTGCAAACAAAAAAGAGTATTTTTTTTTGAAAGAAGATTAAAAGACATTCGAATTTTTCGRAAACAAAGGTGAAAAAATGGAATGGATTTAGACAGGTACTTTTTTTTCCTGAATTCCAAAAATAATTTATTGTTTTTTTTTTCCGATATTCAAATCGTGTTTAAATTTGTTTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26564</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>67910</contig_pos>
        <strand></strand>
        <context>ctctagaagc[G/A]ctcaaaactt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTCTGTCCAAACTTCAATGGGTCGTATTTCTTTGAAAAATCTCTAGAAGC</left_flank>
        <right_flank>CTCAAAACTTGTAAAAACATAGATTTACATAATTACTCATTCATCTATCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAAGGGAAGTGTTTTCAGAAAAGCGTTGAAATTTTTCTCAAACTTCTGTCATTGGTACTTTTGAACACGCTGATTACAGAACTGAAGTCAGTTTTTCCACCCCGGTCCTGTGAAAAAAGTTATGAGCTGTGAAAGTGATTTCAGTGCTAATTTCTCATTTTTGGAGTAAATTTTTGAATGGATTAATGACAGCTTTTCGTGATTTTTTAACAGTAAATTGTACTTCTATATGTTGTTCTACAATCTGAGAAAGTTTCCTCATTTTTCAAAAAAATTTTTTTTTTTCAAAAAATGTCACTATTTGGTTCCCCCTTTGGAATTTTTTTTCAAATTTTCGCAAAATTTTAAAAATATGCTAAAATGAAGCCTGGACGTAGAGAAACAATGAAATGAGTCTTTTCGCAAGATTTCGTAGCCTATATTCCTCTAGAAATCAGAAATAAGCGATTTCTGTCCAAACTTCAATGGGTCGTATTTCTTTGAAAAATCTCTAGAAGCGCTCAAAACTTGTAAAAACATAGATTTACATAATTACTCATTCATCTATCTTTTTTCCAACCGCAGAATAAACCTGTTTAGGGTATATTATTGACTAACACTACGACTAGGGAAGACTTTCTAGTGTTGCTTCCAGAAATTTATGATGAGTCGTTAAACAATCGACATATTTTCGATATATTTCAAATAAATAGAGATGGTAAAGCTTAAGGTTACCGATCTGGAGGGGCTACTATTAGAGAAAATACGGGAACTTATAATTTAACTCGTAAAACATTTCCATTACCTTCGAAATGTTCTTAACCATTGTGCTCTCAAAAACAAGTCCGAAAATTATTTTCCGGCGTTGAAAATGTTTATTTGAAGTGAACACTCAAATAATTATAAGAAAACTCTCACAATTTTGATCGGAAAAAAGTGTTTGATCATGAAACTTTGAGATAAAAAATGAGTTTGATCACAGTAAGACAAGAATTACAGTTTGAAAGTTGAGAACACCGT</canonical>
            <polymorphic>ACAAGGGAAGTGTTTTCAGAAAAGCGTTGAAATTTTTCTCAAACTTCTGTCATTGGTACTTTTGAACACGCTGATTACAGAACTGAAGTCAGTTTTTCCACCCCGGTCCTGTGAAAAAAGTTATGAGCTGTGAAAGTGATTTCAGTGCTAATTTCTCATTTTTGGAGTAAATTTTTGAATGGATTAATGACAGCTTTTCGTGATTTTTTAACAGTAAATTGTACTTCTATATGTTGTTCTACAATCTGAGAAAGTTTCCTCATTTTTCAAAAAAATTTTTTTTTTTCAAAAAATGTCACTATTTGGTTCCCCCTTTGGAATTTTTTTTCAAATTTTCGCAAAATTTTAAAAATATGCTAAAATGAAGCCTGGACGTAGAGAAACAATGAAATGAGTCTTTTCGCAAGATTTCGTAGCCTATATTCCTCTAGAAATCAGAAATAAGCGATTTCTGTCCAAACTTCAATGGGTCGTATTTCTTTGAAAAATCTCTAGAAGCRCTCAAAACTTGTAAAAACATAGATTTACATAATTACTCATTCATCTATCTTTTTTCCAACCGCAGAATAAACCTGTTTAGGGTATATTATTGACTAACACTACGACTAGGGAAGACTTTCTAGTGTTGCTTCCAGAAATTTATGATGAGTCGTTAAACAATCGACATATTTTCGATATATTTCAAATAAATAGAGATGGTAAAGCTTAAGGTTACCGATCTGGAGGGGCTACTATTAGAGAAAATACGGGAACTTATAATTTAACTCGTAAAACATTTCCATTACCTTCGAAATGTTCTTAACCATTGTGCTCTCAAAAACAAGTCCGAAAATTATTTTCCGGCGTTGAAAATGTTTATTTGAAGTGAACACTCAAATAATTATAAGAAAACTCTCACAATTTTGATCGGAAAAAAGTGTTTGATCATGAAACTTTGAGATAAAAAATGAGTTTGATCACAGTAAGACAAGAATTACAGTTTGAAAGTTGAGAACACCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCGCT</site>
                <isoschizomers>
                    <enzyme>AfeI</enzyme>
                    <enzyme>Aor51HI</enzyme>
                    <enzyme>Eco47III</enzyme>
                    <enzyme>FunI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGAAATGAAAGTTGACACT</pcr_primer_p1>
		<pcr_primer_p2>TCGATTGTTTAACGACTCATC</pcr_primer_p2>
		<pcr_amplicon_size>685</pcr_amplicon_size>
		<canonical_amplicon>CGCTCAAAACTTGTAAAAACATAGATTTACATAATTACTCATTCATCTATCTTTTTTCCAACCGCAGAATAAACCTGTTTAGGGTATATTATTGACTAACACTACGACTAGGGAAGACTTTCTAGTGTTGCTTCCAGAAATTTATGATGAGTCGTTAAACAATCGA</canonical_amplicon>
		<polymorphic_amplicon>CRCTCAAAACTTGTAAAAACATAGATTTACATAATTACTCATTCATCTATCTTTTTTCCAACCGCAGAATAAACCTGTTTAGGGTATATTATTGACTAACACTACGACTAGGGAAGACTTTCTAGTGTTGCTTCCAGAAATTTATGATGAGTCGTTAAACAATCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26565</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>102116</contig_pos>
        <strand>+</strand>
        <context>TTCGKATTTC[A/G]TTTTTTTWAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTC</left_flank>
        <right_flank>TTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAGCAATACAAAAAACAGCAATTCGAACGCAGAAAAGTACAACGCGAGCAAAACAAGGCACTGTTGAGAGGCGGCGAACTGAATGGCAACCTCGAATTGTTATTGTGCACCTGGAAAACAGTAGCGCGCCTTTGCATAGACACTCTTGCCGCGTCATACAGAAGGCCCACTGAAGAGGTCACTCGAACGACACTGTGTAGAGATGGCCCCATGTAACGATGAGGGGCCAAAAACAACTACAACGTAGTCAGCACGCTGTGTTAAAATAATAGTTATTGATTGCAACCGGATCAAACTAGCTAGGAGAACGATAGACGACCCCGCCGTAACACAGAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATG</canonical>
            <polymorphic>TTTAGCAATACAAAAAACAGCAATTCGAACGCAGAAAAGTACAACGCGAGCAAAACAAGGCACTGTTGAGAGGCGGCGAACTGAATGGCAACCTCGAATTGTTATTGTGCACCTGGAAAACAGTAGCGCGCCTTTGCATAGACACTCTTGCCGCGTCATACAGAAGGCCCACTGAAGAGGTCACTCGAACGACACTGTGTAGAGATGGCCCCATGTAACGATGAGGGGCCAAAAACAACTACAACGTAGTCAGCACGCTGTGTTAAAATAATAGTTATTGATTGCAACCGGATCAAACTAGCTAGGAGAACGATAGACGACCCCGCCGTAACACAGAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCRTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTTCAACACCATCAATACATATTAACTAGAGATGATATAAATACATTTGACGCAGCAGTATAGATCATAGAATCAAGACCAAAAATAGCGATATAATCATGGTGAGGAAGATTTCGAAATCAAAGTTTTTTACAAAACTAAATTTTTTGTGTCATGAACATGGCTGGGCATAAAATGTTTTTAACGGAATCCGTGAAACGCAAAATTGATAGACTTAAAAATCCGTGAATAGGCCATGAATACCGTTTTTCTTGTGCTATCTCTGGCCAGTTCATTAAACTCAACAAATCGAATAAAAGAAAACACAACTATTCGTTTCAGCAGAGACCACTGGTAGCACCCAAGAAAAATACATTGCCTTATGCCAATAGCTGAGAGGCAGCGTTGCAGCAGGAAGGTCAGAAATCACCAGGATATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGTGCCCCATAATTAGAC</pcr_primer_p1>
		<pcr_primer_p2>AAGCTTGTGTTTTCCAAGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCTTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTT</canonical_amplicon>
		<polymorphic_amplicon>GAGGTGCCCCATAATTAGACGGGGGACCCCGCCACACTGTGTGGACCTCTTTCCTCTTTGCGCGGGCCGTCTGTGTATTTGCCTGTGTGGCTGCGCCATTCTTTCGGTTGTCTCGCGGTGTTCCATTTACATATTAGTTTCTCCTTTTCCCAAGTTCGTATTTCRTTTTTTTTATGTTTGTAAACGCTGCAATTATCAGCGATTGTTTGATAAAAATATAATTTTCAGGCGACTTGGAAAACACAAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26566</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>103276</contig_pos>
        <strand>+</strand>
        <context>TTTTTCATTT[A/G]GACCTCAAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTT</left_flank>
        <right_flank>GACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTACGTGATCAGAATGGTCAACAATTGACTGCGAAAGTCATTTCGACTAGACCATACTCAACTCAGCGTGAGATGAAAGTAAGACCATTTTTCCTGAAACAATGATCAGATGAAATAATTGTTATACAGGCGCTCCGTAAAATTCGAGAGAACCCACACAATAATTTATTGTTGCTGTATTCAGTTGGTATGTTGAAGAATCCACCGCCAGGATATACAGACGAAGTTATTATAACAGAAGCATGCGGACCATCTATCAGAGAAATTATGACAAGTAAGTTTGGTACAATGACTTTGATAGGATTGTTAGAAGAATCTGAGAAAGTTTTGAGATTATATTTCAACGATAACCTATTTTTAAAGTTTTTTTTTTCCAGAGGCTAGAATTGAAACTGGAAATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAG</canonical>
            <polymorphic>TTTACGTGATCAGAATGGTCAACAATTGACTGCGAAAGTCATTTCGACTAGACCATACTCAACTCAGCGTGAGATGAAAGTAAGACCATTTTTCCTGAAACAATGATCAGATGAAATAATTGTTATACAGGCGCTCCGTAAAATTCGAGAGAACCCACACAATAATTTATTGTTGCTGTATTCAGTTGGTATGTTGAAGAATCCACCGCCAGGATATACAGACGAAGTTATTATAACAGAAGCATGCGGACCATCTATCAGAGAAATTATGACAAGTAAGTTTGGTACAATGACTTTGATAGGATTGTTAGAAGAATCTGAGAAAGTTTTGAGATTATATTTCAACGATAACCTATTTTTAAAGTTTTTTTTTTCCAGAGGCTAGAATTGAAACTGGAAATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTRGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAAGAATCTGAGAAAGTTTTGA</pcr_primer_p1>
		<pcr_primer_p2>ACTCGTATCCATTTCATACTTGA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAGAAGAATCTGAGAAAGTTTTGAGATTATATTTCAACGATAACCTATTTTTAAAGTTTTTTTTTTCCAGAGGCTAGAATTGAAACTGGAAATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGT</canonical_amplicon>
		<polymorphic_amplicon>TAGAAGAATCTGAGAAAGTTTTGAGATTATATTTCAACGATAACCTATTTTTAAAGTTTTTTTTTTCCAGAGGCTAGAATTGAAACTGGAAATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTRGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26567</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>103493</contig_pos>
        <strand>+</strand>
        <context>TGGGTTTTTT[A/T]WWAAACTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTT</left_flank>
        <right_flank>AAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGACGAAGTTATTATAACAGAAGCATGCGGACCATCTATCAGAGAAATTATGACAAGTAAGTTTGGTACAATGACTTTGATAGGATTGTTAGAAGAATCTGAGAAAGTTTTGAGATTATATTTCAACGATAACCTATTTTTAAAGTTTTTTTTTTCCAGAGGCTAGAATTGAAACTGGAAATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGATTACTTGATGGAATTTATGCGTGACGACACGGACCTTCCACTGTTCGAGTTCCTCAAATTCGCTCTCAAGTTTGATCCTGCCATCATTTGAGAAAGTGA</canonical>
            <polymorphic>ACAGACGAAGTTATTATAACAGAAGCATGCGGACCATCTATCAGAGAAATTATGACAAGTAAGTTTGGTACAATGACTTTGATAGGATTGTTAGAAGAATCTGAGAAAGTTTTGAGATTATATTTCAACGATAACCTATTTTTAAAGTTTTTTTTTTCCAGAGGCTAGAATTGAAACTGGAAATACCAAATTGTGTTCGTTCTCTATGGATAATATCAAACGTATTGGAAAGCAAATCGGAGACGCAATGCTCCATTTGGAAAAACTCAAGATTTTTCATTTAGACCTCAAGGCTTCCAATGTCGCGTTTTCGAGAAACTTCAAGTATGAAATGGATACGAGTTTGACCCACGCGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTWAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGACGGATGTCTGGTCCTATGGATGCCTGATCGCCCAATCGGATCGGCCATCGGTGGAGTGCTGTTCAACTCGAGAAAAGGCGACACTCAGCTTGAAATACAACAGTCACAATTTGAGATGATGATCTTCAGAATGAATGCGACCATTTCAAGAGAAACGCTTGAAGAATCTAAGCAAAGAGGGTAAGAAGTTTTTTTTGCAAATATATATTCTTGGAATGTTGTTTTCAGAAAATGCTCCCTCAATTTCGACTTCCTCAATGATTACAAAGAAGTCAACAATAACCGCGAAGGAAATAACAATCAAGATTACTTGATGGAATTTATGCGTGACGACACGGACCTTCCACTGTTCGAGTTCCTCAAATTCGCTCTCAAGTTTGATCCTGCCATCATTTGAGAAAGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 356 143</canonical_bands>
                <polymorphic_bands>857 143</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 239 142 117</canonical_bands>
                <polymorphic_bands>619 239 142</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATTATCTCAATGAGTGATTTT</pcr_primer_p1>
		<pcr_primer_p2>GTCTTTTTGTTGTAGGGAAGAC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTAAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGAC</canonical_amplicon>
		<polymorphic_amplicon>CGATTATCTCAATGAGTGATTTTGATATTAAAGTCATTGATTATGGAAATTCGCTGGCTCACTCTGAATCTGGAAACCCGGAAGGAGTCAAACTGGTCCAACCGCAAAACATGCGTGCCTCAGAAGTGTTTATGGGTGGGTTTTTTWAAAAACTTTTAGTTCGATTGAAACCGTTTTGAAATACTTTCTAGATCTCCCAAATAAATTTCCTTTGTTCTCAGGTCTTCCCTACAACAAAAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26568</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>119629</contig_pos>
        <strand></strand>
        <context>TTTTTTTTTG[A/C]TGTTAAGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATTGAGATGTCGAGACATGGAAGGTAAGAACATTTTCTTTTTTTTTTTG</left_flank>
        <right_flank>TGTTAAGAAACACAAGAAGACTTACAGAAGATGTCAGCTAAACTTCGATT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACATCAAAGCTGCCAACGTGACATTCACCAACACCAACGTCAAATACAAAGTAGATTCCAATTCGACCATCCCGATAATCACAATGAGTGAACTCCAAATTAAACTCATCGATTATGGAAACTCAATGTCTCACTGGGCACCTGGAACCGCAAGACCTATGCTTGCTCAGCCACAAAATTCCAGAGCACCAGAAGTTTTCATGGGTGAGTTATGACTGTAATACAGCTGCAATAAAACAATTTTATTTTGTTTTGTAAATGTTGTGTTTTTTTCAGGAATTTCATTCGACCAGAAGTGTGGCGTGTGATCCATGGGATGCCTGATAAGCCAACTGTACCTTGGAAAAGCCATATTCACTCATCAAAGTGGCGCGTCACAGAACGAGAAACAACAGTCACAATTCGAATATATGGTTTCGACAATGAATGCGACCATTCCGGAGGAAATGATTGAGATGTCGAGACATGGAAGGTAAGAACATTTTCTTTTTTTTTTTGATGTTAAGAAACACAAGAAGACTTACAGAAGATGTCAGCTAAACTTCGATTTCCTCAAAAATCGCCAAGAAAACAACAATCAGGATTTATTGATGAATTTGATGCGTGAAGACACGGATCTTCCATTGTTCGAATTTCTGAAGTTCGTCCTCATCTTCAATCCAACCCAGAGACCATCATTCGAAGAAGTCCTCAACCACGAATTCCTCACAAACTTCTAAGCTGAACTCTCCATGCATTTCCATTCTTTATCCATTTTTCATGCATTCTACCTGGTTTTTTTTACCCGTTTCAAAATTGTTGTGTTTTACGCATTTTTTCAAACCCCGTCTATTGAATTTCATGTGTCACTGAAACACGTGTACACATTCTTTGTGTCTTCATAAGGATAATTCCATATCATCCGTTCGAAATTTTCTGTGTTTAACACAGTATCATCTCAAGCTCAGTACGAGTTCCCAATGTCGCCCAAAGATTTTTCTCATTGTAATCAATGCATTG</canonical>
            <polymorphic>GACATCAAAGCTGCCAACGTGACATTCACCAACACCAACGTCAAATACAAAGTAGATTCCAATTCGACCATCCCGATAATCACAATGAGTGAACTCCAAATTAAACTCATCGATTATGGAAACTCAATGTCTCACTGGGCACCTGGAACCGCAAGACCTATGCTTGCTCAGCCACAAAATTCCAGAGCACCAGAAGTTTTCATGGGTGAGTTATGACTGTAATACAGCTGCAATAAAACAATTTTATTTTGTTTTGTAAATGTTGTGTTTTTTTCAGGAATTTCATTCGACCAGAAGTGTGGCGTGTGATCCATGGGATGCCTGATAAGCCAACTGTACCTTGGAAAAGCCATATTCACTCATCAAAGTGGCGCGTCACAGAACGAGAAACAACAGTCACAATTCGAATATATGGTTTCGACAATGAATGCGACCATTCCGGAGGAAATGATTGAGATGTCGAGACATGGAAGGTAAGAACATTTTCTTTTTTTTTTTGMTGTTAAGAAACACAAGAAGACTTACAGAAGATGTCAGCTAAACTTCGATTTCCTCAAAAATCGCCAAGAAAACAACAATCAGGATTTATTGATGAATTTGATGCGTGAAGACACGGATCTTCCATTGTTCGAATTTCTGAAGTTCGTCCTCATCTTCAATCCAACCCAGAGACCATCATTCGAAGAAGTCCTCAACCACGAATTCCTCACAAACTTCTAAGCTGAACTCTCCATGCATTTCCATTCTTTATCCATTTTTCATGCATTCTACCTGGTTTTTTTTACCCGTTTCAAAATTGTTGTGTTTTACGCATTTTTTCAAACCCCGTCTATTGAATTTCATGTGTCACTGAAACACGTGTACACATTCTTTGTGTCTTCATAAGGATAATTCCATATCATCCGTTCGAAATTTTCTGTGTTTAACACAGTATCATCTCAAGCTCAGTACGAGTTCCCAATGTCGCCCAAAGATTTTTCTCATTGTAATCAATGCATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCCATATTCACTCATCAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TCAATAAATCCTGATTGTTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGCCATATTCACTCATCAAAGTGGCGCGTCACAGAACGAGAAACAACAGTCACAATTCGAATATATGGTTTCGACAATGAATGCGACCATTCCGGAGGAAATGATTGAGATGTCGAGACATGGAAGGTAAGAACATTTTCTTTTTTTTTTTGATGTTAAGAAACACAAGAAGACTTACAGAAGATGTCAGCTAAACTTCGATTTCCTCAAAAATCGCCAAGAAAACAACAATCAGGATTTATTGA</canonical_amplicon>
		<polymorphic_amplicon>AGCCATATTCACTCATCAAAGTGGCGCGTCACAGAACGAGAAACAACAGTCACAATTCGAATATATGGTTTCGACAATGAATGCGACCATTCCGGAGGAAATGATTGAGATGTCGAGACATGGAAGGTAAGAACATTTTCTTTTTTTTTTTGMTGTTAAGAAACACAAGAAGACTTACAGAAGATGTCAGCTAAACTTCGATTTCCTCAAAAATCGCCAAGAAAACAACAATCAGGATTTATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26569</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>119675</contig_pos>
        <strand></strand>
        <context>AGCTAAACTT[C/A]GATTTCCTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTGATGTTAAGAAACACAAGAAGACTTACAGAAGATGTCAGCTAAACTT</left_flank>
        <right_flank>GATTTCCTCAAAAATCGCCAAGAAAACAACAATCAGGATTTATTGATGAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAAAGTAGATTCCAATTCGACCATCCCGATAATCACAATGAGTGAACTCCAAATTAAACTCATCGATTATGGAAACTCAATGTCTCACTGGGCACCTGGAACCGCAAGACCTATGCTTGCTCAGCCACAAAATTCCAGAGCACCAGAAGTTTTCATGGGTGAGTTATGACTGTAATACAGCTGCAATAAAACAATTTTATTTTGTTTTGTAAATGTTGTGTTTTTTTCAGGAATTTCATTCGACCAGAAGTGTGGCGTGTGATCCATGGGATGCCTGATAAGCCAACTGTACCTTGGAAAAGCCATATTCACTCATCAAAGTGGCGCGTCACAGAACGAGAAACAACAGTCACAATTCGAATATATGGTTTCGACAATGAATGCGACCATTCCGGAGGAAATGATTGAGATGTCGAGACATGGAAGGTAAGAACATTTTCTTTTTTTTTTTGATGTTAAGAAACACAAGAAGACTTACAGAAGATGTCAGCTAAACTTCGATTTCCTCAAAAATCGCCAAGAAAACAACAATCAGGATTTATTGATGAATTTGATGCGTGAAGACACGGATCTTCCATTGTTCGAATTTCTGAAGTTCGTCCTCATCTTCAATCCAACCCAGAGACCATCATTCGAAGAAGTCCTCAACCACGAATTCCTCACAAACTTCTAAGCTGAACTCTCCATGCATTTCCATTCTTTATCCATTTTTCATGCATTCTACCTGGTTTTTTTTACCCGTTTCAAAATTGTTGTGTTTTACGCATTTTTTCAAACCCCGTCTATTGAATTTCATGTGTCACTGAAACACGTGTACACATTCTTTGTGTCTTCATAAGGATAATTCCATATCATCCGTTCGAAATTTTCTGTGTTTAACACAGTATCATCTCAAGCTCAGTACGAGTTCCCAATGTCGCCCAAAGATTTTTCTCATTGTAATCAATGCATTGTTTTCTCAGAGTTTCACAATTATGATCTAACTTTAAGCGCATGCGT</canonical>
            <polymorphic>ACAAAGTAGATTCCAATTCGACCATCCCGATAATCACAATGAGTGAACTCCAAATTAAACTCATCGATTATGGAAACTCAATGTCTCACTGGGCACCTGGAACCGCAAGACCTATGCTTGCTCAGCCACAAAATTCCAGAGCACCAGAAGTTTTCATGGGTGAGTTATGACTGTAATACAGCTGCAATAAAACAATTTTATTTTGTTTTGTAAATGTTGTGTTTTTTTCAGGAATTTCATTCGACCAGAAGTGTGGCGTGTGATCCATGGGATGCCTGATAAGCCAACTGTACCTTGGAAAAGCCATATTCACTCATCAAAGTGGCGCGTCACAGAACGAGAAACAACAGTCACAATTCGAATATATGGTTTCGACAATGAATGCGACCATTCCGGAGGAAATGATTGAGATGTCGAGACATGGAAGGTAAGAACATTTTCTTTTTTTTTTTGATGTTAAGAAACACAAGAAGACTTACAGAAGATGTCAGCTAAACTTMGATTTCCTCAAAAATCGCCAAGAAAACAACAATCAGGATTTATTGATGAATTTGATGCGTGAAGACACGGATCTTCCATTGTTCGAATTTCTGAAGTTCGTCCTCATCTTCAATCCAACCCAGAGACCATCATTCGAAGAAGTCCTCAACCACGAATTCCTCACAAACTTCTAAGCTGAACTCTCCATGCATTTCCATTCTTTATCCATTTTTCATGCATTCTACCTGGTTTTTTTTACCCGTTTCAAAATTGTTGTGTTTTACGCATTTTTTCAAACCCCGTCTATTGAATTTCATGTGTCACTGAAACACGTGTACACATTCTTTGTGTCTTCATAAGGATAATTCCATATCATCCGTTCGAAATTTTCTGTGTTTAACACAGTATCATCTCAAGCTCAGTACGAGTTCCCAATGTCGCCCAAAGATTTTTCTCATTGTAATCAATGCATTGTTTTCTCAGAGTTTCACAATTATGATCTAACTTTAAGCGCATGCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>227 177 138 117 85 84 51 46 42 19 14</canonical_bands>
                <polymorphic_bands>227 177 169 138 117 51 46 42 19 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATATGGTTTCGACAATGAATG</pcr_primer_p1>
		<pcr_primer_p2>GAAGATGAGGACGAACTTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATATGGTTTCGACAATGAATGCGACCATTCCGGAGGAAATGATTGAGATGTCGAGACATGGAAGGTAAGAACATTTTCTTTTTTTTTTTGATGTTAAGAAACACAAGAAGACTTACAGAAGATGTCAGCTAAACTTCGATTTCCTCAAAAATCGCCAAGAAAACAACAATCAGGATTTATTGATGAATTTGATGCGTGAAGACACGGATCTTCCATTGTTCGAATTTCTGAAGTTCGTCCTCATCTTC</canonical_amplicon>
		<polymorphic_amplicon>ATATATGGTTTCGACAATGAATGCGACCATTCCGGAGGAAATGATTGAGATGTCGAGACATGGAAGGTAAGAACATTTTCTTTTTTTTTTTGATGTTAAGAAACACAAGAAGACTTACAGAAGATGTCAGCTAAACTTMGATTTCCTCAAAAATCGCCAAGAAAACAACAATCAGGATTTATTGATGAATTTGATGCGTGAAGACACGGATCTTCCATTGTTCGAATTTCTGAAGTTCGTCCTCATCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26570</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>119798</contig_pos>
        <strand></strand>
        <context>ATCCAACCCA[G/A]AGACCATYAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTTCCATTGTTCGAATTTCTGAAGTTCGTCCTCATCTTCAATCCAACCCA</left_flank>
        <right_flank>AGACCATCATTCGAAGAAGTCCTCAACCACGAATTCCTCACAAACTTCTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCACAAAATTCCAGAGCACCAGAAGTTTTCATGGGTGAGTTATGACTGTAATACAGCTGCAATAAAACAATTTTATTTTGTTTTGTAAATGTTGTGTTTTTTTCAGGAATTTCATTCGACCAGAAGTGTGGCGTGTGATCCATGGGATGCCTGATAAGCCAACTGTACCTTGGAAAAGCCATATTCACTCATCAAAGTGGCGCGTCACAGAACGAGAAACAACAGTCACAATTCGAATATATGGTTTCGACAATGAATGCGACCATTCCGGAGGAAATGATTGAGATGTCGAGACATGGAAGGTAAGAACATTTTCTTTTTTTTTTTGATGTTAAGAAACACAAGAAGACTTACAGAAGATGTCAGCTAAACTTCGATTTCCTCAAAAATCGCCAAGAAAACAACAATCAGGATTTATTGATGAATTTGATGCGTGAAGACACGGATCTTCCATTGTTCGAATTTCTGAAGTTCGTCCTCATCTTCAATCCAACCCAGAGACCATCATTCGAAGAAGTCCTCAACCACGAATTCCTCACAAACTTCTAAGCTGAACTCTCCATGCATTTCCATTCTTTATCCATTTTTCATGCATTCTACCTGGTTTTTTTTACCCGTTTCAAAATTGTTGTGTTTTACGCATTTTTTCAAACCCCGTCTATTGAATTTCATGTGTCACTGAAACACGTGTACACATTCTTTGTGTCTTCATAAGGATAATTCCATATCATCCGTTCGAAATTTTCTGTGTTTAACACAGTATCATCTCAAGCTCAGTACGAGTTCCCAATGTCGCCCAAAGATTTTTCTCATTGTAATCAATGCATTGTTTTCTCAGAGTTTCACAATTATGATCTAACTTTAAGCGCATGCGTTCCAATGTAAGTATCCCAGTTTCTTACATATTCCACTTTGTTTCAAATAAAAGTGATGATTTAATAGTTCATATCTTATTTTGCTTTCTTTGATTTTCAAAACTATTGGACAATGAGTTAAAG</canonical>
            <polymorphic>AGCCACAAAATTCCAGAGCACCAGAAGTTTTCATGGGTGAGTTATGACTGTAATACAGCTGCAATAAAACAATTTTATTTTGTTTTGTAAATGTTGTGTTTTTTTCAGGAATTTCATTCGACCAGAAGTGTGGCGTGTGATCCATGGGATGCCTGATAAGCCAACTGTACCTTGGAAAAGCCATATTCACTCATCAAAGTGGCGCGTCACAGAACGAGAAACAACAGTCACAATTCGAATATATGGTTTCGACAATGAATGCGACCATTCCGGAGGAAATGATTGAGATGTCGAGACATGGAAGGTAAGAACATTTTCTTTTTTTTTTTGATGTTAAGAAACACAAGAAGACTTACAGAAGATGTCAGCTAAACTTCGATTTCCTCAAAAATCGCCAAGAAAACAACAATCAGGATTTATTGATGAATTTGATGCGTGAAGACACGGATCTTCCATTGTTCGAATTTCTGAAGTTCGTCCTCATCTTCAATCCAACCCARAGACCATCATTCGAAGAAGTCCTCAACCACGAATTCCTCACAAACTTCTAAGCTGAACTCTCCATGCATTTCCATTCTTTATCCATTTTTCATGCATTCTACCTGGTTTTTTTTACCCGTTTCAAAATTGTTGTGTTTTACGCATTTTTTCAAACCCCGTCTATTGAATTTCATGTGTCACTGAAACACGTGTACACATTCTTTGTGTCTTCATAAGGATAATTCCATATCATCCGTTCGAAATTTTCTGTGTTTAACACAGTATCATCTCAAGCTCAGTACGAGTTCCCAATGTCGCCCAAAGATTTTTCTCATTGTAATCAATGCATTGTTTTCTCAGAGTTTCACAATTATGATCTAACTTTAAGCGCATGCGTTCCAATGTAAGTATCCCAGTTTCTTACATATTCCACTTTGTTTCAAATAAAAGTGATGATTTAATAGTTCATATCTTATTTTGCTTTCTTTGATTTTCAAAACTATTGGACAATGAGTTAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACAAGAAGACTTACAGAAGATG</pcr_primer_p1>
		<pcr_primer_p2>AAAAATGGATAAAGAATGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACACAAGAAGACTTACAGAAGATGTCAGCTAAACTTCGATTTCCTCAAAAATCGCCAAGAAAACAACAATCAGGATTTATTGATGAATTTGATGCGTGAAGACACGGATCTTCCATTGTTCGAATTTCTGAAGTTCGTCCTCATCTTCAATCCAACCCAGAGACCATCATTCGAAGAAGTCCTCAACCACGAATTCCTCACAAACTTCTAAGCTGAACTCTCCATGCATTTCCATTCTTTATCCATTTTT</canonical_amplicon>
		<polymorphic_amplicon>ACACAAGAAGACTTACAGAAGATGTCAGCTAAACTTCGATTTCCTCAAAAATCGCCAAGAAAACAACAATCAGGATTTATTGATGAATTTGATGCGTGAAGACACGGATCTTCCATTGTTCGAATTTCTGAAGTTCGTCCTCATCTTCAATCCAACCCARAGACCATCATTCGAAGAAGTCCTCAACCACGAATTCCTCACAAACTTCTAAGCTGAACTCTCCATGCATTTCCATTCTTTATCCATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26571</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>119806</contig_pos>
        <strand></strand>
        <context>CARAGACCAT[C/T]ATTCGAAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTCGAATTTCTGAAGTTCGTCCTCATCTTCAATCCAACCCAGAGACCAT</left_flank>
        <right_flank>ATTCGAAGAAGTCCTCAACCACGAATTCCTCACAAACTTCTAAGCTGAAC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCCAGAGCACCAGAAGTTTTCATGGGTGAGTTATGACTGTAATACAGCTGCAATAAAACAATTTTATTTTGTTTTGTAAATGTTGTGTTTTTTTCAGGAATTTCATTCGACCAGAAGTGTGGCGTGTGATCCATGGGATGCCTGATAAGCCAACTGTACCTTGGAAAAGCCATATTCACTCATCAAAGTGGCGCGTCACAGAACGAGAAACAACAGTCACAATTCGAATATATGGTTTCGACAATGAATGCGACCATTCCGGAGGAAATGATTGAGATGTCGAGACATGGAAGGTAAGAACATTTTCTTTTTTTTTTTGATGTTAAGAAACACAAGAAGACTTACAGAAGATGTCAGCTAAACTTCGATTTCCTCAAAAATCGCCAAGAAAACAACAATCAGGATTTATTGATGAATTTGATGCGTGAAGACACGGATCTTCCATTGTTCGAATTTCTGAAGTTCGTCCTCATCTTCAATCCAACCCAGAGACCATCATTCGAAGAAGTCCTCAACCACGAATTCCTCACAAACTTCTAAGCTGAACTCTCCATGCATTTCCATTCTTTATCCATTTTTCATGCATTCTACCTGGTTTTTTTTACCCGTTTCAAAATTGTTGTGTTTTACGCATTTTTTCAAACCCCGTCTATTGAATTTCATGTGTCACTGAAACACGTGTACACATTCTTTGTGTCTTCATAAGGATAATTCCATATCATCCGTTCGAAATTTTCTGTGTTTAACACAGTATCATCTCAAGCTCAGTACGAGTTCCCAATGTCGCCCAAAGATTTTTCTCATTGTAATCAATGCATTGTTTTCTCAGAGTTTCACAATTATGATCTAACTTTAAGCGCATGCGTTCCAATGTAAGTATCCCAGTTTCTTACATATTCCACTTTGTTTCAAATAAAAGTGATGATTTAATAGTTCATATCTTATTTTGCTTTCTTTGATTTTCAAAACTATTGGACAATGAGTTAAAGTTCTTCAA</canonical>
            <polymorphic>AATTCCAGAGCACCAGAAGTTTTCATGGGTGAGTTATGACTGTAATACAGCTGCAATAAAACAATTTTATTTTGTTTTGTAAATGTTGTGTTTTTTTCAGGAATTTCATTCGACCAGAAGTGTGGCGTGTGATCCATGGGATGCCTGATAAGCCAACTGTACCTTGGAAAAGCCATATTCACTCATCAAAGTGGCGCGTCACAGAACGAGAAACAACAGTCACAATTCGAATATATGGTTTCGACAATGAATGCGACCATTCCGGAGGAAATGATTGAGATGTCGAGACATGGAAGGTAAGAACATTTTCTTTTTTTTTTTGATGTTAAGAAACACAAGAAGACTTACAGAAGATGTCAGCTAAACTTCGATTTCCTCAAAAATCGCCAAGAAAACAACAATCAGGATTTATTGATGAATTTGATGCGTGAAGACACGGATCTTCCATTGTTCGAATTTCTGAAGTTCGTCCTCATCTTCAATCCAACCCAGAGACCATYATTCGAAGAAGTCCTCAACCACGAATTCCTCACAAACTTCTAAGCTGAACTCTCCATGCATTTCCATTCTTTATCCATTTTTCATGCATTCTACCTGGTTTTTTTTACCCGTTTCAAAATTGTTGTGTTTTACGCATTTTTTCAAACCCCGTCTATTGAATTTCATGTGTCACTGAAACACGTGTACACATTCTTTGTGTCTTCATAAGGATAATTCCATATCATCCGTTCGAAATTTTCTGTGTTTAACACAGTATCATCTCAAGCTCAGTACGAGTTCCCAATGTCGCCCAAAGATTTTTCTCATTGTAATCAATGCATTGTTTTCTCAGAGTTTCACAATTATGATCTAACTTTAAGCGCATGCGTTCCAATGTAAGTATCCCAGTTTCTTACATATTCCACTTTGTTTCAAATAAAAGTGATGATTTAATAGTTCATATCTTATTTTGCTTTCTTTGATTTTCAAAACTATTGGACAATGAGTTAAAGTTCTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACAAGAAGACTTACAGAAGATG</pcr_primer_p1>
		<pcr_primer_p2>AAAAATGGATAAAGAATGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACACAAGAAGACTTACAGAAGATGTCAGCTAAACTTCGATTTCCTCAAAAATCGCCAAGAAAACAACAATCAGGATTTATTGATGAATTTGATGCGTGAAGACACGGATCTTCCATTGTTCGAATTTCTGAAGTTCGTCCTCATCTTCAATCCAACCCAGAGACCATCATTCGAAGAAGTCCTCAACCACGAATTCCTCACAAACTTCTAAGCTGAACTCTCCATGCATTTCCATTCTTTATCCATTTTT</canonical_amplicon>
		<polymorphic_amplicon>ACACAAGAAGACTTACAGAAGATGTCAGCTAAACTTCGATTTCCTCAAAAATCGCCAAGAAAACAACAATCAGGATTTATTGATGAATTTGATGCGTGAAGACACGGATCTTCCATTGTTCGAATTTCTGAAGTTCGTCCTCATCTTCAATCCAACCCAGAGACCATYATTCGAAGAAGTCCTCAACCACGAATTCCTCACAAACTTCTAAGCTGAACTCTCCATGCATTTCCATTCTTTATCCATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26572</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>119937</contig_pos>
        <strand></strand>
        <context>TGTTGTGTTT[T/A]ACGCATTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTCATGCATTCTACCTGGTTTTTTTTACCCGTTTCAAAATTGTTGTGTTT</left_flank>
        <right_flank>ACGCATTTTTTCAAACCCCGTCTATTGAATTTCATGTGTCACTGAAACAC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCATGGGATGCCTGATAAGCCAACTGTACCTTGGAAAAGCCATATTCACTCATCAAAGTGGCGCGTCACAGAACGAGAAACAACAGTCACAATTCGAATATATGGTTTCGACAATGAATGCGACCATTCCGGAGGAAATGATTGAGATGTCGAGACATGGAAGGTAAGAACATTTTCTTTTTTTTTTTGATGTTAAGAAACACAAGAAGACTTACAGAAGATGTCAGCTAAACTTCGATTTCCTCAAAAATCGCCAAGAAAACAACAATCAGGATTTATTGATGAATTTGATGCGTGAAGACACGGATCTTCCATTGTTCGAATTTCTGAAGTTCGTCCTCATCTTCAATCCAACCCAGAGACCATCATTCGAAGAAGTCCTCAACCACGAATTCCTCACAAACTTCTAAGCTGAACTCTCCATGCATTTCCATTCTTTATCCATTTTTCATGCATTCTACCTGGTTTTTTTTACCCGTTTCAAAATTGTTGTGTTTTACGCATTTTTTCAAACCCCGTCTATTGAATTTCATGTGTCACTGAAACACGTGTACACATTCTTTGTGTCTTCATAAGGATAATTCCATATCATCCGTTCGAAATTTTCTGTGTTTAACACAGTATCATCTCAAGCTCAGTACGAGTTCCCAATGTCGCCCAAAGATTTTTCTCATTGTAATCAATGCATTGTTTTCTCAGAGTTTCACAATTATGATCTAACTTTAAGCGCATGCGTTCCAATGTAAGTATCCCAGTTTCTTACATATTCCACTTTGTTTCAAATAAAAGTGATGATTTAATAGTTCATATCTTATTTTGCTTTCTTTGATTTTCAAAACTATTGGACAATGAGTTAAAGTTCTTCAAGCATGGTTAGAAGGGAGTACGGTAATTAAGCATTCGAAAAAAAAACAAATTTGAATTTTATTGCAAGGCGATCAGCATTCAAAAAGTTCAATTTGTCTCTTCCAGCTGTGCGATGTATCCTTTTGAGATCA</canonical>
            <polymorphic>ATCCATGGGATGCCTGATAAGCCAACTGTACCTTGGAAAAGCCATATTCACTCATCAAAGTGGCGCGTCACAGAACGAGAAACAACAGTCACAATTCGAATATATGGTTTCGACAATGAATGCGACCATTCCGGAGGAAATGATTGAGATGTCGAGACATGGAAGGTAAGAACATTTTCTTTTTTTTTTTGATGTTAAGAAACACAAGAAGACTTACAGAAGATGTCAGCTAAACTTCGATTTCCTCAAAAATCGCCAAGAAAACAACAATCAGGATTTATTGATGAATTTGATGCGTGAAGACACGGATCTTCCATTGTTCGAATTTCTGAAGTTCGTCCTCATCTTCAATCCAACCCAGAGACCATCATTCGAAGAAGTCCTCAACCACGAATTCCTCACAAACTTCTAAGCTGAACTCTCCATGCATTTCCATTCTTTATCCATTTTTCATGCATTCTACCTGGTTTTTTTTACCCGTTTCAAAATTGTTGTGTTTWACGCATTTTTTCAAACCCCGTCTATTGAATTTCATGTGTCACTGAAACACGTGTACACATTCTTTGTGTCTTCATAAGGATAATTCCATATCATCCGTTCGAAATTTTCTGTGTTTAACACAGTATCATCTCAAGCTCAGTACGAGTTCCCAATGTCGCCCAAAGATTTTTCTCATTGTAATCAATGCATTGTTTTCTCAGAGTTTCACAATTATGATCTAACTTTAAGCGCATGCGTTCCAATGTAAGTATCCCAGTTTCTTACATATTCCACTTTGTTTCAAATAAAAGTGATGATTTAATAGTTCATATCTTATTTTGCTTTCTTTGATTTTCAAAACTATTGGACAATGAGTTAAAGTTCTTCAAGCATGGTTAGAAGGGAGTACGGTAATTAAGCATTCGAAAAAAAAACAAATTTGAATTTTATTGCAAGGCGATCAGCATTCAAAAAGTTCAATTTGTCTCTTCCAGCTGTGCGATGTATCCTTTTGAGATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCACAAACTTCTAAGCTGAACT</pcr_primer_p1>
		<pcr_primer_p2>CGTACTGAGCTTGAGATGATACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTCACAAACTTCTAAGCTGAACTCTCCATGCATTTCCATTCTTTATCCATTTTTCATGCATTCTACCTGGTTTTTTTTACCCGTTTCAAAATTGTTGTGTTTTACGCATTTTTTCAAACCCCGTCTATTGAATTTCATGTGTCACTGAAACACGTGTACACATTCTTTGTGTCTTCATAAGGATAATTCCATATCATCCGTTCGAAATTTTCTGTGTTTAACACAGTATCATCTCAAGCTCAGTACG</canonical_amplicon>
		<polymorphic_amplicon>CTCACAAACTTCTAAGCTGAACTCTCCATGCATTTCCATTCTTTATCCATTTTTCATGCATTCTACCTGGTTTTTTTTACCCGTTTCAAAATTGTTGTGTTTWACGCATTTTTTCAAACCCCGTCTATTGAATTTCATGTGTCACTGAAACACGTGTACACATTCTTTGTGTCTTCATAAGGATAATTCCATATCATCCGTTCGAAATTTTCTGTGTTTAACACAGTATCATCTCAAGCTCAGTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26573</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>119954</contig_pos>
        <strand></strand>
        <context>TTTTTCAAAC[C/T]CCGTCTATTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTTTTTTACCCGTTTCAAAATTGTTGTGTTTTACGCATTTTTTCAAAC</left_flank>
        <right_flank>CCGTCTATTGAATTTCATGTGTCACTGAAACACGTGTACACATTCTTTGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGCCAACTGTACCTTGGAAAAGCCATATTCACTCATCAAAGTGGCGCGTCACAGAACGAGAAACAACAGTCACAATTCGAATATATGGTTTCGACAATGAATGCGACCATTCCGGAGGAAATGATTGAGATGTCGAGACATGGAAGGTAAGAACATTTTCTTTTTTTTTTTGATGTTAAGAAACACAAGAAGACTTACAGAAGATGTCAGCTAAACTTCGATTTCCTCAAAAATCGCCAAGAAAACAACAATCAGGATTTATTGATGAATTTGATGCGTGAAGACACGGATCTTCCATTGTTCGAATTTCTGAAGTTCGTCCTCATCTTCAATCCAACCCAGAGACCATCATTCGAAGAAGTCCTCAACCACGAATTCCTCACAAACTTCTAAGCTGAACTCTCCATGCATTTCCATTCTTTATCCATTTTTCATGCATTCTACCTGGTTTTTTTTACCCGTTTCAAAATTGTTGTGTTTTACGCATTTTTTCAAACCCCGTCTATTGAATTTCATGTGTCACTGAAACACGTGTACACATTCTTTGTGTCTTCATAAGGATAATTCCATATCATCCGTTCGAAATTTTCTGTGTTTAACACAGTATCATCTCAAGCTCAGTACGAGTTCCCAATGTCGCCCAAAGATTTTTCTCATTGTAATCAATGCATTGTTTTCTCAGAGTTTCACAATTATGATCTAACTTTAAGCGCATGCGTTCCAATGTAAGTATCCCAGTTTCTTACATATTCCACTTTGTTTCAAATAAAAGTGATGATTTAATAGTTCATATCTTATTTTGCTTTCTTTGATTTTCAAAACTATTGGACAATGAGTTAAAGTTCTTCAAGCATGGTTAGAAGGGAGTACGGTAATTAAGCATTCGAAAAAAAAACAAATTTGAATTTTATTGCAAGGCGATCAGCATTCAAAAAGTTCAATTTGTCTCTTCCAGCTGTGCGATGTATCCTTTTGAGATCATAACTGCTCTAGCGCGG</canonical>
            <polymorphic>TAAGCCAACTGTACCTTGGAAAAGCCATATTCACTCATCAAAGTGGCGCGTCACAGAACGAGAAACAACAGTCACAATTCGAATATATGGTTTCGACAATGAATGCGACCATTCCGGAGGAAATGATTGAGATGTCGAGACATGGAAGGTAAGAACATTTTCTTTTTTTTTTTGATGTTAAGAAACACAAGAAGACTTACAGAAGATGTCAGCTAAACTTCGATTTCCTCAAAAATCGCCAAGAAAACAACAATCAGGATTTATTGATGAATTTGATGCGTGAAGACACGGATCTTCCATTGTTCGAATTTCTGAAGTTCGTCCTCATCTTCAATCCAACCCAGAGACCATCATTCGAAGAAGTCCTCAACCACGAATTCCTCACAAACTTCTAAGCTGAACTCTCCATGCATTTCCATTCTTTATCCATTTTTCATGCATTCTACCTGGTTTTTTTTACCCGTTTCAAAATTGTTGTGTTTTACGCATTTTTTCAAACYCCGTCTATTGAATTTCATGTGTCACTGAAACACGTGTACACATTCTTTGTGTCTTCATAAGGATAATTCCATATCATCCGTTCGAAATTTTCTGTGTTTAACACAGTATCATCTCAAGCTCAGTACGAGTTCCCAATGTCGCCCAAAGATTTTTCTCATTGTAATCAATGCATTGTTTTCTCAGAGTTTCACAATTATGATCTAACTTTAAGCGCATGCGTTCCAATGTAAGTATCCCAGTTTCTTACATATTCCACTTTGTTTCAAATAAAAGTGATGATTTAATAGTTCATATCTTATTTTGCTTTCTTTGATTTTCAAAACTATTGGACAATGAGTTAAAGTTCTTCAAGCATGGTTAGAAGGGAGTACGGTAATTAAGCATTCGAAAAAAAAACAAATTTGAATTTTATTGCAAGGCGATCAGCATTCAAAAAGTTCAATTTGTCTCTTCCAGCTGTGCGATGTATCCTTTTGAGATCATAACTGCTCTAGCGCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCACAAACTTCTAAGCTGAACT</pcr_primer_p1>
		<pcr_primer_p2>CGTACTGAGCTTGAGATGATACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTCACAAACTTCTAAGCTGAACTCTCCATGCATTTCCATTCTTTATCCATTTTTCATGCATTCTACCTGGTTTTTTTTACCCGTTTCAAAATTGTTGTGTTTTACGCATTTTTTCAAACCCCGTCTATTGAATTTCATGTGTCACTGAAACACGTGTACACATTCTTTGTGTCTTCATAAGGATAATTCCATATCATCCGTTCGAAATTTTCTGTGTTTAACACAGTATCATCTCAAGCTCAGTACG</canonical_amplicon>
		<polymorphic_amplicon>CTCACAAACTTCTAAGCTGAACTCTCCATGCATTTCCATTCTTTATCCATTTTTCATGCATTCTACCTGGTTTTTTTTACCCGTTTCAAAATTGTTGTGTTTTACGCATTTTTTCAAACYCCGTCTATTGAATTTCATGTGTCACTGAAACACGTGTACACATTCTTTGTGTCTTCATAAGGATAATTCCATATCATCCGTTCGAAATTTTCTGTGTTTAACACAGTATCATCTCAAGCTCAGTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26574</snp_id>
        <super_contig>c002500848.Contig1</super_contig>
        <contig_pos>119988</contig_pos>
        <strand></strand>
        <context>ACTGAAACAC[G/A]TGTACACATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACGCATTTTTTCAAACCCCGTCTATTGAATTTCATGTGTCACTGAAACAC</left_flank>
        <right_flank>TGTACACATTCTTTGTGTCTTCATAAGGATAATTCCATATCATCCGTTCG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATCAAAGTGGCGCGTCACAGAACGAGAAACAACAGTCACAATTCGAATATATGGTTTCGACAATGAATGCGACCATTCCGGAGGAAATGATTGAGATGTCGAGACATGGAAGGTAAGAACATTTTCTTTTTTTTTTTGATGTTAAGAAACACAAGAAGACTTACAGAAGATGTCAGCTAAACTTCGATTTCCTCAAAAATCGCCAAGAAAACAACAATCAGGATTTATTGATGAATTTGATGCGTGAAGACACGGATCTTCCATTGTTCGAATTTCTGAAGTTCGTCCTCATCTTCAATCCAACCCAGAGACCATCATTCGAAGAAGTCCTCAACCACGAATTCCTCACAAACTTCTAAGCTGAACTCTCCATGCATTTCCATTCTTTATCCATTTTTCATGCATTCTACCTGGTTTTTTTTACCCGTTTCAAAATTGTTGTGTTTTACGCATTTTTTCAAACCCCGTCTATTGAATTTCATGTGTCACTGAAACACGTGTACACATTCTTTGTGTCTTCATAAGGATAATTCCATATCATCCGTTCGAAATTTTCTGTGTTTAACACAGTATCATCTCAAGCTCAGTACGAGTTCCCAATGTCGCCCAAAGATTTTTCTCATTGTAATCAATGCATTGTTTTCTCAGAGTTTCACAATTATGATCTAACTTTAAGCGCATGCGTTCCAATGTAAGTATCCCAGTTTCTTACATATTCCACTTTGTTTCAAATAAAAGTGATGATTTAATAGTTCATATCTTATTTTGCTTTCTTTGATTTTCAAAACTATTGGACAATGAGTTAAAGTTCTTCAAGCATGGTTAGAAGGGAGTACGGTAATTAAGCATTCGAAAAAAAAACAAATTTGAATTTTATTGCAAGGCGATCAGCATTCAAAAAGTTCAATTTGTCTCTTCCAGCTGTGCGATGTATCCTTTTGAGATCATAACTGCTCTAGCGCGGATAAAGACTGTGTAACGTCCGAGCAATGTCGTCT</canonical>
            <polymorphic>TCATCAAAGTGGCGCGTCACAGAACGAGAAACAACAGTCACAATTCGAATATATGGTTTCGACAATGAATGCGACCATTCCGGAGGAAATGATTGAGATGTCGAGACATGGAAGGTAAGAACATTTTCTTTTTTTTTTTGATGTTAAGAAACACAAGAAGACTTACAGAAGATGTCAGCTAAACTTCGATTTCCTCAAAAATCGCCAAGAAAACAACAATCAGGATTTATTGATGAATTTGATGCGTGAAGACACGGATCTTCCATTGTTCGAATTTCTGAAGTTCGTCCTCATCTTCAATCCAACCCAGAGACCATCATTCGAAGAAGTCCTCAACCACGAATTCCTCACAAACTTCTAAGCTGAACTCTCCATGCATTTCCATTCTTTATCCATTTTTCATGCATTCTACCTGGTTTTTTTTACCCGTTTCAAAATTGTTGTGTTTTACGCATTTTTTCAAACCCCGTCTATTGAATTTCATGTGTCACTGAAACACRTGTACACATTCTTTGTGTCTTCATAAGGATAATTCCATATCATCCGTTCGAAATTTTCTGTGTTTAACACAGTATCATCTCAAGCTCAGTACGAGTTCCCAATGTCGCCCAAAGATTTTTCTCATTGTAATCAATGCATTGTTTTCTCAGAGTTTCACAATTATGATCTAACTTTAAGCGCATGCGTTCCAATGTAAGTATCCCAGTTTCTTACATATTCCACTTTGTTTCAAATAAAAGTGATGATTTAATAGTTCATATCTTATTTTGCTTTCTTTGATTTTCAAAACTATTGGACAATGAGTTAAAGTTCTTCAAGCATGGTTAGAAGGGAGTACGGTAATTAAGCATTCGAAAAAAAAACAAATTTGAATTTTATTGCAAGGCGATCAGCATTCAAAAAGTTCAATTTGTCTCTTCCAGCTGTGCGATGTATCCTTTTGAGATCATAACTGCTCTAGCGCGGATAAAGACTGTGTAACGTCCGAGCAATGTCGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACGTG</site>
                <isoschizomers>
                    <enzyme>AcvI</enzyme>
                    <enzyme>BbrPI</enzyme>
                    <enzyme>Eco72I</enzyme>
                    <enzyme>PmaCI</enzyme>
                    <enzyme>PmlI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>186 113 95 95 88 85 65 50 45 42 22 21 20 11 11 11 8 8 7 6 4 4 3</canonical_bands>
                <polymorphic_bands>186 113 95 95 88 85 65 50 45 42 22 21 20 11 11 11 8 8 8 7 6 3</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>504 496</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>498 483 19</canonical_bands>
                <polymorphic_bands>981 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCACAAACTTCTAAGCTGAACT</pcr_primer_p1>
		<pcr_primer_p2>CGTACTGAGCTTGAGATGATACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTCACAAACTTCTAAGCTGAACTCTCCATGCATTTCCATTCTTTATCCATTTTTCATGCATTCTACCTGGTTTTTTTTACCCGTTTCAAAATTGTTGTGTTTTACGCATTTTTTCAAACCCCGTCTATTGAATTTCATGTGTCACTGAAACACGTGTACACATTCTTTGTGTCTTCATAAGGATAATTCCATATCATCCGTTCGAAATTTTCTGTGTTTAACACAGTATCATCTCAAGCTCAGTACG</canonical_amplicon>
		<polymorphic_amplicon>CTCACAAACTTCTAAGCTGAACTCTCCATGCATTTCCATTCTTTATCCATTTTTCATGCATTCTACCTGGTTTTTTTTACCCGTTTCAAAATTGTTGTGTTTTACGCATTTTTTCAAACCCCGTCTATTGAATTTCATGTGTCACTGAAACACRTGTACACATTCTTTGTGTCTTCATAAGGATAATTCCATATCATCCGTTCGAAATTTTCTGTGTTTAACACAGTATCATCTCAAGCTCAGTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26575</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>15349</contig_pos>
        <strand>+</strand>
        <context>AAGTCCAGAA[C/T]ATAATAGTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCAATTTTTGAAATTTTTCGAGAACGGAATACTTTAAAAGTCCAGAA</left_flank>
        <right_flank>ATAATAGTCCCGTGAACTACAGTAATCTCACGAAATTCAGAATTTCGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAGATTCTGAGATTCTGAGATTCTGATATTCTGAGATTCTGAGATTCTGTGATTTTGAGTTTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGTGATTTTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATACTGAGATTCTGAGATTCTGAGATTCTGATATTCTGAGATTCTGAGATTCTGTGATTTTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGATATTATGAGATTCTGAAATTTTGATATTCTGAGATTCTGAGATTCTAAAATTCTAAAATTCTAAAAATTACGACGTTTTCGACATTTTTCAATTTTTGAAATTTTTCGAGAACGGAATACTTTAAAAGTCCAGAATATAATAGTCCCGTGAACTACAGTAATCTCACGAAATTCAGAATTTCGAAAACATCGAAAATTTTGAAATTTCAGAATTATAAGAATATCAGAAATGCAGAATTCAAGAATATCGTAATTTTCGATTCAAGATTGACAAAATTCAATAATCTTTTTTTTTTTGAAATTCTAGAATTTCGAAATCACCTGACCATGCCGAATTGAAAAAAAATCATTTTATTTGAAAATCATAAAAAAGTTTAGAAACGAAATAGAACATCGTGATTTTTAATCCAAATTTTCAGAAAAACTATCAAAATACAAGTGTGGAGCCGTGTGAGGATTTCTTTGAGCACTCGTGTGGCCGGCTCCATGAGCACATGCTAGAGGACTCCAATTGGGGATATAGCCAGTTCAGAATGTTGATGTATCAGGTTTTTTGTGAGTTTTTTTTCAGATTTTTTTCTTTAAAAATTTTCAAAAAAAAAATTCCAGCTATAATTCGAAAAACTAAGAAATTCA</canonical>
            <polymorphic>CTGAGATTCTGAGATTCTGAGATTCTGATATTCTGAGATTCTGAGATTCTGTGATTTTGAGTTTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGTGATTTTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATACTGAGATTCTGAGATTCTGAGATTCTGATATTCTGAGATTCTGAGATTCTGTGATTTTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGATATTATGAGATTCTGAAATTTTGATATTCTGAGATTCTGAGATTCTAAAATTCTAAAATTCTAAAAATTACGACGTTTTCGACATTTTTCAATTTTTGAAATTTTTCGAGAACGGAATACTTTAAAAGTCCAGAAYATAATAGTCCCGTGAACTACAGTAATCTCACGAAATTCAGAATTTCGAAAACATCGAAAATTTTGAAATTTCAGAATTATAAGAATATCAGAAATGCAGAATTCAAGAATATCGTAATTTTCGATTCAAGATTGACAAAATTCAATAATCTTTTTTTTTTTGAAATTCTAGAATTTCGAAATCACCTGACCATGCCGAATTGAAAAAAAATCATTTTATTTGAAAATCATAAAAAAGTTTAGAAACGAAATAGAACATCGTGATTTTTAATCCAAATTTTCAGAAAAACTATCAAAATACAAGTGTGGAGCCGTGTGAGGATTTCTTTGAGCACTCGTGTGGCCGGCTCCATGAGCACATGCTAGAGGACTCCAATTGGGGATATAGCCAGTTCAGAATGTTGATGTATCAGGTTTTTTGTGAGTTTTTTTTCAGATTTTTTTCTTTAAAAATTTTCAAAAAAAAAATTCCAGCTATAATTCGAAAAACTAAGAAATTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGAGTGTTTGGGAATC</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAAATTTTCGATGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>788</pcr_amplicon_size>
		<canonical_amplicon>ATATAATAGTCCCGTGAACTACAGTAATCTCACGAAATTCAGAATTTCGAAAACATCGAAAATTTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>AYATAATAGTCCCGTGAACTACAGTAATCTCACGAAATTCAGAATTTCGAAAACATCGAAAATTTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26576</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>19248</contig_pos>
        <strand></strand>
        <context>aggttgctgt[G/C]aaagatatca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TACCGTAATAACTACTTTTCAACTTTGAGACAGTTTATCTAGGTTGCTGT</left_flank>
        <right_flank>AAAGATATCAAAAAGTAATCCACTAACGAAATGTTAATCATAATGTCAAA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTGACGTGACGGTGTACAGTGACCCGTGTCTACGTGACCGTCGTGCCGCTTTTATTTATGACCTCGGTCGGCCGCGTAGCTTGCTCCACCGTTGCTCATCATAACTAACTTTGAGCGCAATTATCTCGTTTGCTGTGGAAGATATCGAAAAGTGGTTCACTAACAACATATTTATTACAACATCAACAGCAATTTGTCCGTTGACCACGTTTTGATATCTTTCACCGAAACCGAGATAAATTTGGTCGAAATTGTAGGACCCTACTTTTGGAGGGTTTACGGGCCACGTTTCTTTTGGCCCACAGGATACTTATTTCATTTTTAAAAATTATTCATGATGTGGTTTATTAGAAAAGTGTAGTTCTAGATTTTTTTTTCTATATTTTCTAAACTTTTCAAACAAAAAATTATCAGCGGCTTGCGTGAAACATTAAAAAATAAGAATTACCGTAATAACTACTTTTCAACTTTGAGACAGTTTATCTAGGTTGCTGTGAAAGATATCAAAAAGTAATCCACTAACGAAATGTTAATCATAATGTCAAAAGTATTTTGTCAGCTGACCACTTTTTGATATTTCGCATAAGAACCAAGATAATTTGGACCAAAGTTCGGAGGGCCTTCCGTTACGTATAGGCCATTTCAGCAGATGGGGTTTACGCTCACGGGATTTTTATCTCTCAAAAGTTTTGATTATTTTCCAGATGAACGGCACTGTAACTCGATACGAAATTGTTGGGGACCATCTCGGTCTTCGAACTGCTTATAGAATATTCAAAAAAGCTGAAAATTTGGATACTGTAAAATTGCCAGGATTTGATGACGTTTCACCGGACCAAATGTTCTTTTATAGTTATGCACTGGTGAGTCGTTTTCACAAATTTTAGACTTTCTTTAATTTGAATTTAAGATTTTTCAAATATTGACTTTAAACAACGTTTCACTTCAATTTTTCAGAGACAATGCGACATCTATAACCCAACTATAAGACCCGAA</canonical>
            <polymorphic>AATTTTGACGTGACGGTGTACAGTGACCCGTGTCTACGTGACCGTCGTGCCGCTTTTATTTATGACCTCGGTCGGCCGCGTAGCTTGCTCCACCGTTGCTCATCATAACTAACTTTGAGCGCAATTATCTCGTTTGCTGTGGAAGATATCGAAAAGTGGTTCACTAACAACATATTTATTACAACATCAACAGCAATTTGTCCGTTGACCACGTTTTGATATCTTTCACCGAAACCGAGATAAATTTGGTCGAAATTGTAGGACCCTACTTTTGGAGGGTTTACGGGCCACGTTTCTTTTGGCCCACAGGATACTTATTTCATTTTTAAAAATTATTCATGATGTGGTTTATTAGAAAAGTGTAGTTCTAGATTTTTTTTTCTATATTTTCTAAACTTTTCAAACAAAAAATTATCAGCGGCTTGCGTGAAACATTAAAAAATAAGAATTACCGTAATAACTACTTTTCAACTTTGAGACAGTTTATCTAGGTTGCTGTSAAAGATATCAAAAAGTAATCCACTAACGAAATGTTAATCATAATGTCAAAAGTATTTTGTCAGCTGACCACTTTTTGATATTTCGCATAAGAACCAAGATAATTTGGACCAAAGTTCGGAGGGCCTTCCGTTACGTATAGGCCATTTCAGCAGATGGGGTTTACGCTCACGGGATTTTTATCTCTCAAAAGTTTTGATTATTTTCCAGATGAACGGCACTGTAACTCGATACGAAATTGTTGGGGACCATCTCGGTCTTCGAACTGCTTATAGAATATTCAAAAAAGCTGAAAATTTGGATACTGTAAAATTGCCAGGATTTGATGACGTTTCACCGGACCAAATGTTCTTTTATAGTTATGCACTGGTGAGTCGTTTTCACAAATTTTAGACTTTCTTTAATTTGAATTTAAGATTTTTCAAATATTGACTTTAAACAACGTTTCACTTCAATTTTTCAGAGACAATGCGACATCTATAACCCAACTATAAGACCCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>116 99 71 67 66 62 53 49 49 48 48 43 40 30 22 17 17 16 16 12 11 9 8 7 7 6 6 5</canonical_bands>
                <polymorphic_bands>116 99 93 67 66 62 53 49 49 48 48 43 40 30 17 17 16 16 12 11 9 8 7 7 6 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATGTGGTTTATTAGAAAAGTGT</pcr_primer_p1>
		<pcr_primer_p2>TCTGCTGAAATGGCCTATAC</pcr_primer_p2>
		<pcr_amplicon_size>315</pcr_amplicon_size>
		<canonical_amplicon>TGATGTGGTTTATTAGAAAAGTGTAGTTCTAGATTTTTTTTTCTATATTTTCTAAACTTTTCAAACAAAAAATTATCAGCGGCTTGCGTGAAACATTAAAAAATAAGAATTACCGTAATAACTACTTTTCAACTTTGAGACAGTTTATCTAGGTTGCTGTGAAAGATATCAAAAAGTAATCCACTAACGAAATGTTAATCATAATGTCAAAAGTATTTTGTCAGCTGACCACTTTTTGATATTTCGCATAAGAACCAAGATAATTTGGACCAAAGTTCGGAGGGCCTTCCGTTACGTATAGGCCATTTCAGCAGA</canonical_amplicon>
		<polymorphic_amplicon>TGATGTGGTTTATTAGAAAAGTGTAGTTCTAGATTTTTTTTTCTATATTTTCTAAACTTTTCAAACAAAAAATTATCAGCGGCTTGCGTGAAACATTAAAAAATAAGAATTACCGTAATAACTACTTTTCAACTTTGAGACAGTTTATCTAGGTTGCTGTSAAAGATATCAAAAAGTAATCCACTAACGAAATGTTAATCATAATGTCAAAAGTATTTTGTCAGCTGACCACTTTTTGATATTTCGCATAAGAACCAAGATAATTTGGACCAAAGTTCGGAGGGCCTTCCGTTACGTATAGGCCATTTCAGCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26577</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>19290</contig_pos>
        <strand></strand>
        <context>tgttaatcat[A/G]atgtcaaaag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTGCTGTGAAAGATATCAAAAAGTAATCCACTAACGAAATGTTAATCAT</left_flank>
        <right_flank>ATGTCAAAAGTATTTTGTCAGCTGACCACTTTTTGATATTTCGCATAAGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTCGTGCCGCTTTTATTTATGACCTCGGTCGGCCGCGTAGCTTGCTCCACCGTTGCTCATCATAACTAACTTTGAGCGCAATTATCTCGTTTGCTGTGGAAGATATCGAAAAGTGGTTCACTAACAACATATTTATTACAACATCAACAGCAATTTGTCCGTTGACCACGTTTTGATATCTTTCACCGAAACCGAGATAAATTTGGTCGAAATTGTAGGACCCTACTTTTGGAGGGTTTACGGGCCACGTTTCTTTTGGCCCACAGGATACTTATTTCATTTTTAAAAATTATTCATGATGTGGTTTATTAGAAAAGTGTAGTTCTAGATTTTTTTTTCTATATTTTCTAAACTTTTCAAACAAAAAATTATCAGCGGCTTGCGTGAAACATTAAAAAATAAGAATTACCGTAATAACTACTTTTCAACTTTGAGACAGTTTATCTAGGTTGCTGTGAAAGATATCAAAAAGTAATCCACTAACGAAATGTTAATCATAATGTCAAAAGTATTTTGTCAGCTGACCACTTTTTGATATTTCGCATAAGAACCAAGATAATTTGGACCAAAGTTCGGAGGGCCTTCCGTTACGTATAGGCCATTTCAGCAGATGGGGTTTACGCTCACGGGATTTTTATCTCTCAAAAGTTTTGATTATTTTCCAGATGAACGGCACTGTAACTCGATACGAAATTGTTGGGGACCATCTCGGTCTTCGAACTGCTTATAGAATATTCAAAAAAGCTGAAAATTTGGATACTGTAAAATTGCCAGGATTTGATGACGTTTCACCGGACCAAATGTTCTTTTATAGTTATGCACTGGTGAGTCGTTTTCACAAATTTTAGACTTTCTTTAATTTGAATTTAAGATTTTTCAAATATTGACTTTAAACAACGTTTCACTTCAATTTTTCAGAGACAATGCGACATCTATAACCCAACTATAAGACCCGAATATCTGAAAGGCCGTCCCCACCCTACAAGCCGTTTTCGAGTG</canonical>
            <polymorphic>CGTCGTGCCGCTTTTATTTATGACCTCGGTCGGCCGCGTAGCTTGCTCCACCGTTGCTCATCATAACTAACTTTGAGCGCAATTATCTCGTTTGCTGTGGAAGATATCGAAAAGTGGTTCACTAACAACATATTTATTACAACATCAACAGCAATTTGTCCGTTGACCACGTTTTGATATCTTTCACCGAAACCGAGATAAATTTGGTCGAAATTGTAGGACCCTACTTTTGGAGGGTTTACGGGCCACGTTTCTTTTGGCCCACAGGATACTTATTTCATTTTTAAAAATTATTCATGATGTGGTTTATTAGAAAAGTGTAGTTCTAGATTTTTTTTTCTATATTTTCTAAACTTTTCAAACAAAAAATTATCAGCGGCTTGCGTGAAACATTAAAAAATAAGAATTACCGTAATAACTACTTTTCAACTTTGAGACAGTTTATCTAGGTTGCTGTGAAAGATATCAAAAAGTAATCCACTAACGAAATGTTAATCATRATGTCAAAAGTATTTTGTCAGCTGACCACTTTTTGATATTTCGCATAAGAACCAAGATAATTTGGACCAAAGTTCGGAGGGCCTTCCGTTACGTATAGGCCATTTCAGCAGATGGGGTTTACGCTCACGGGATTTTTATCTCTCAAAAGTTTTGATTATTTTCCAGATGAACGGCACTGTAACTCGATACGAAATTGTTGGGGACCATCTCGGTCTTCGAACTGCTTATAGAATATTCAAAAAAGCTGAAAATTTGGATACTGTAAAATTGCCAGGATTTGATGACGTTTCACCGGACCAAATGTTCTTTTATAGTTATGCACTGGTGAGTCGTTTTCACAAATTTTAGACTTTCTTTAATTTGAATTTAAGATTTTTCAAATATTGACTTTAAACAACGTTTCACTTCAATTTTTCAGAGACAATGCGACATCTATAACCCAACTATAAGACCCGAATATCTGAAAGGCCGTCCCCACCCTACAAGCCGTTTTCGAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATGTGGTTTATTAGAAAAGTGT</pcr_primer_p1>
		<pcr_primer_p2>TCTGCTGAAATGGCCTATAC</pcr_primer_p2>
		<pcr_amplicon_size>315</pcr_amplicon_size>
		<canonical_amplicon>TGATGTGGTTTATTAGAAAAGTGTAGTTCTAGATTTTTTTTTCTATATTTTCTAAACTTTTCAAACAAAAAATTATCAGCGGCTTGCGTGAAACATTAAAAAATAAGAATTACCGTAATAACTACTTTTCAACTTTGAGACAGTTTATCTAGGTTGCTGTGAAAGATATCAAAAAGTAATCCACTAACGAAATGTTAATCATAATGTCAAAAGTATTTTGTCAGCTGACCACTTTTTGATATTTCGCATAAGAACCAAGATAATTTGGACCAAAGTTCGGAGGGCCTTCCGTTACGTATAGGCCATTTCAGCAGA</canonical_amplicon>
		<polymorphic_amplicon>TGATGTGGTTTATTAGAAAAGTGTAGTTCTAGATTTTTTTTTCTATATTTTCTAAACTTTTCAAACAAAAAATTATCAGCGGCTTGCGTGAAACATTAAAAAATAAGAATTACCGTAATAACTACTTTTCAACTTTGAGACAGTTTATCTAGGTTGCTGTGAAAGATATCAAAAAGTAATCCACTAACGAAATGTTAATCATRATGTCAAAAGTATTTTGTCAGCTGACCACTTTTTGATATTTCGCATAAGAACCAAGATAATTTGGACCAAAGTTCGGAGGGCCTTCCGTTACGTATAGGCCATTTCAGCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26578</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>19378</contig_pos>
        <strand></strand>
        <context>agggccttcc[G/A]ttacGTATAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTTCGCATAAGAACCAAGATAATTTGGACCAAAGTTCGGAGGGCCTTCC</left_flank>
        <right_flank>TTACGTATAGGCCATTTCAGCAGATGGGGTTTACGCTCACGGGATTTTTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTTGCTGTGGAAGATATCGAAAAGTGGTTCACTAACAACATATTTATTACAACATCAACAGCAATTTGTCCGTTGACCACGTTTTGATATCTTTCACCGAAACCGAGATAAATTTGGTCGAAATTGTAGGACCCTACTTTTGGAGGGTTTACGGGCCACGTTTCTTTTGGCCCACAGGATACTTATTTCATTTTTAAAAATTATTCATGATGTGGTTTATTAGAAAAGTGTAGTTCTAGATTTTTTTTTCTATATTTTCTAAACTTTTCAAACAAAAAATTATCAGCGGCTTGCGTGAAACATTAAAAAATAAGAATTACCGTAATAACTACTTTTCAACTTTGAGACAGTTTATCTAGGTTGCTGTGAAAGATATCAAAAAGTAATCCACTAACGAAATGTTAATCATAATGTCAAAAGTATTTTGTCAGCTGACCACTTTTTGATATTTCGCATAAGAACCAAGATAATTTGGACCAAAGTTCGGAGGGCCTTCCGTTACGTATAGGCCATTTCAGCAGATGGGGTTTACGCTCACGGGATTTTTATCTCTCAAAAGTTTTGATTATTTTCCAGATGAACGGCACTGTAACTCGATACGAAATTGTTGGGGACCATCTCGGTCTTCGAACTGCTTATAGAATATTCAAAAAAGCTGAAAATTTGGATACTGTAAAATTGCCAGGATTTGATGACGTTTCACCGGACCAAATGTTCTTTTATAGTTATGCACTGGTGAGTCGTTTTCACAAATTTTAGACTTTCTTTAATTTGAATTTAAGATTTTTCAAATATTGACTTTAAACAACGTTTCACTTCAATTTTTCAGAGACAATGCGACATCTATAACCCAACTATAAGACCCGAATATCTGAAAGGCCGTCCCCACCCTACAAGCCGTTTTCGAGTGAATGGAGTCATTCAGAATCTTCCAGAATTCTCAGAAGCGTTTAATTGTCCCAAAACGGCGGCTATGAACTTGAAAAATAAATGTACAC</canonical>
            <polymorphic>CGTTTGCTGTGGAAGATATCGAAAAGTGGTTCACTAACAACATATTTATTACAACATCAACAGCAATTTGTCCGTTGACCACGTTTTGATATCTTTCACCGAAACCGAGATAAATTTGGTCGAAATTGTAGGACCCTACTTTTGGAGGGTTTACGGGCCACGTTTCTTTTGGCCCACAGGATACTTATTTCATTTTTAAAAATTATTCATGATGTGGTTTATTAGAAAAGTGTAGTTCTAGATTTTTTTTTCTATATTTTCTAAACTTTTCAAACAAAAAATTATCAGCGGCTTGCGTGAAACATTAAAAAATAAGAATTACCGTAATAACTACTTTTCAACTTTGAGACAGTTTATCTAGGTTGCTGTGAAAGATATCAAAAAGTAATCCACTAACGAAATGTTAATCATAATGTCAAAAGTATTTTGTCAGCTGACCACTTTTTGATATTTCGCATAAGAACCAAGATAATTTGGACCAAAGTTCGGAGGGCCTTCCRTTACGTATAGGCCATTTCAGCAGATGGGGTTTACGCTCACGGGATTTTTATCTCTCAAAAGTTTTGATTATTTTCCAGATGAACGGCACTGTAACTCGATACGAAATTGTTGGGGACCATCTCGGTCTTCGAACTGCTTATAGAATATTCAAAAAAGCTGAAAATTTGGATACTGTAAAATTGCCAGGATTTGATGACGTTTCACCGGACCAAATGTTCTTTTATAGTTATGCACTGGTGAGTCGTTTTCACAAATTTTAGACTTTCTTTAATTTGAATTTAAGATTTTTCAAATATTGACTTTAAACAACGTTTCACTTCAATTTTTCAGAGACAATGCGACATCTATAACCCAACTATAAGACCCGAATATCTGAAAGGCCGTCCCCACCCTACAAGCCGTTTTCGAGTGAATGGAGTCATTCAGAATCTTCCAGAATTCTCAGAAGCGTTTAATTGTCCCAAAACGGCGGCTATGAACTTGAAAAATAAATGTACAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>499 410 91</canonical_bands>
                <polymorphic_bands>590 410</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATGTGGTTTATTAGAAAAGTGT</pcr_primer_p1>
		<pcr_primer_p2>GAGAGATAAAAATCCCGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>TGATGTGGTTTATTAGAAAAGTGTAGTTCTAGATTTTTTTTTCTATATTTTCTAAACTTTTCAAACAAAAAATTATCAGCGGCTTGCGTGAAACATTAAAAAATAAGAATTACCGTAATAACTACTTTTCAACTTTGAGACAGTTTATCTAGGTTGCTGTGAAAGATATCAAAAAGTAATCCACTAACGAAATGTTAATCATAATGTCAAAAGTATTTTGTCAGCTGACCACTTTTTGATATTTCGCATAAGAACCAAGATAATTTGGACCAAAGTTCGGAGGGCCTTCCGTTACGTATAGGCCATTTCAGCAGATGGGGTTTACGCTCACGGGATTTTTATCTCTC</canonical_amplicon>
		<polymorphic_amplicon>TGATGTGGTTTATTAGAAAAGTGTAGTTCTAGATTTTTTTTTCTATATTTTCTAAACTTTTCAAACAAAAAATTATCAGCGGCTTGCGTGAAACATTAAAAAATAAGAATTACCGTAATAACTACTTTTCAACTTTGAGACAGTTTATCTAGGTTGCTGTGAAAGATATCAAAAAGTAATCCACTAACGAAATGTTAATCATAATGTCAAAAGTATTTTGTCAGCTGACCACTTTTTGATATTTCGCATAAGAACCAAGATAATTTGGACCAAAGTTCGGAGGGCCTTCCRTTACGTATAGGCCATTTCAGCAGATGGGGTTTACGCTCACGGGATTTTTATCTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26579</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>19472</contig_pos>
        <strand>+</strand>
        <context>CGGCACTGTA[A/T]CTCGATACGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTTATCTCTCAAAAGTTTTGATTATTTTCCAGATGAACGGCACTGTA</left_flank>
        <right_flank>CTCGATACGAAATTGTTGGGGACCATCTCGGTCTTCGAACTGCTTATAGA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCACCGAAACCGAGATAAATTTGGTCGAAATTGTAGGACCCTACTTTTGGAGGGTTTACGGGCCACGTTTCTTTTGGCCCACAGGATACTTATTTCATTTTTAAAAATTATTCATGATGTGGTTTATTAGAAAAGTGTAGTTCTAGATTTTTTTTTCTATATTTTCTAAACTTTTCAAACAAAAAATTATCAGCGGCTTGCGTGAAACATTAAAAAATAAGAATTACCGTAATAACTACTTTTCAACTTTGAGACAGTTTATCTAGGTTGCTGTGAAAGATATCAAAAAGTAATCCACTAACGAAATGTTAATCATAATGTCAAAAGTATTTTGTCAGCTGACCACTTTTTGATATTTCGCATAAGAACCAAGATAATTTGGACCAAAGTTCGGAGGGCCTTCCGTTACGTATAGGCCATTTCAGCAGATGGGGTTTACGCTCACGGGATTTTTATCTCTCAAAAGTTTTGATTATTTTCCAGATGAACGGCACTGTAACTCGATACGAAATTGTTGGGGACCATCTCGGTCTTCGAACTGCTTATAGAATATTCAAAAAAGCTGAAAATTTGGATACTGTAAAATTGCCAGGATTTGATGACGTTTCACCGGACCAAATGTTCTTTTATAGTTATGCACTGGTGAGTCGTTTTCACAAATTTTAGACTTTCTTTAATTTGAATTTAAGATTTTTCAAATATTGACTTTAAACAACGTTTCACTTCAATTTTTCAGAGACAATGCGACATCTATAACCCAACTATAAGACCCGAATATCTGAAAGGCCGTCCCCACCCTACAAGCCGTTTTCGAGTGAATGGAGTCATTCAGAATCTTCCAGAATTCTCAGAAGCGTTTAATTGTCCCAAAACGGCGGCTATGAACTTGAAAAATAAATGTACACTTTTCTAAACTTTCCGGTTTTTCTTTTTCGGCCGACAATTGATAAAGCGGGCGCGCGCTCACGCTGACGAAAATCGACGGCTGCGAGACCCCGC</canonical>
            <polymorphic>TTCACCGAAACCGAGATAAATTTGGTCGAAATTGTAGGACCCTACTTTTGGAGGGTTTACGGGCCACGTTTCTTTTGGCCCACAGGATACTTATTTCATTTTTAAAAATTATTCATGATGTGGTTTATTAGAAAAGTGTAGTTCTAGATTTTTTTTTCTATATTTTCTAAACTTTTCAAACAAAAAATTATCAGCGGCTTGCGTGAAACATTAAAAAATAAGAATTACCGTAATAACTACTTTTCAACTTTGAGACAGTTTATCTAGGTTGCTGTGAAAGATATCAAAAAGTAATCCACTAACGAAATGTTAATCATAATGTCAAAAGTATTTTGTCAGCTGACCACTTTTTGATATTTCGCATAAGAACCAAGATAATTTGGACCAAAGTTCGGAGGGCCTTCCGTTACGTATAGGCCATTTCAGCAGATGGGGTTTACGCTCACGGGATTTTTATCTCTCAAAAGTTTTGATTATTTTCCAGATGAACGGCACTGTAWCTCGATACGAAATTGTTGGGGACCATCTCGGTCTTCGAACTGCTTATAGAATATTCAAAAAAGCTGAAAATTTGGATACTGTAAAATTGCCAGGATTTGATGACGTTTCACCGGACCAAATGTTCTTTTATAGTTATGCACTGGTGAGTCGTTTTCACAAATTTTAGACTTTCTTTAATTTGAATTTAAGATTTTTCAAATATTGACTTTAAACAACGTTTCACTTCAATTTTTCAGAGACAATGCGACATCTATAACCCAACTATAAGACCCGAATATCTGAAAGGCCGTCCCCACCCTACAAGCCGTTTTCGAGTGAATGGAGTCATTCAGAATCTTCCAGAATTCTCAGAAGCGTTTAATTGTCCCAAAACGGCGGCTATGAACTTGAAAAATAAATGTACACTTTTCTAAACTTTCCGGTTTTTCTTTTTCGGCCGACAATTGATAAAGCGGGCGCGCGCTCACGCTGACGAAAATCGACGGCTGCGAGACCCCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 405 91</canonical_bands>
                <polymorphic_bands>595 405</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATAGGCCATTTCAGCAGAT</pcr_primer_p1>
		<pcr_primer_p2>GACTCACCAGTGCATAACTATAAA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GTATAGGCCATTTCAGCAGATGGGGTTTACGCTCACGGGATTTTTATCTCTCAAAAGTTTTGATTATTTTCCAGATGAACGGCACTGTAACTCGATACGAAATTGTTGGGGACCATCTCGGTCTTCGAACTGCTTATAGAATATTCAAAAAAGCTGAAAATTTGGATACTGTAAAATTGCCAGGATTTGATGACGTTTCACCGGACCAAATGTTCTTTTATAGTTATGCACTGGTGAGTC</canonical_amplicon>
		<polymorphic_amplicon>GTATAGGCCATTTCAGCAGATGGGGTTTACGCTCACGGGATTTTTATCTCTCAAAAGTTTTGATTATTTTCCAGATGAACGGCACTGTAWCTCGATACGAAATTGTTGGGGACCATCTCGGTCTTCGAACTGCTTATAGAATATTCAAAAAAGCTGAAAATTTGGATACTGTAAAATTGCCAGGATTTGATGACGTTTCACCGGACCAAATGTTCTTTTATAGTTATGCACTGGTGAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26580</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>19544</contig_pos>
        <strand>+</strand>
        <context>AGCTGAAAAT[A/T]TGGATACTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCATCTCGGTCTTCGAACTGCTTATAGAATATTCAAAAAAGCTGAAAAT</left_flank>
        <right_flank>TGGATACTGTAAAATTGCCAGGATTTGATGACGTTTCACCGGACCAAATG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGGCCCACAGGATACTTATTTCATTTTTAAAAATTATTCATGATGTGGTTTATTAGAAAAGTGTAGTTCTAGATTTTTTTTTCTATATTTTCTAAACTTTTCAAACAAAAAATTATCAGCGGCTTGCGTGAAACATTAAAAAATAAGAATTACCGTAATAACTACTTTTCAACTTTGAGACAGTTTATCTAGGTTGCTGTGAAAGATATCAAAAAGTAATCCACTAACGAAATGTTAATCATAATGTCAAAAGTATTTTGTCAGCTGACCACTTTTTGATATTTCGCATAAGAACCAAGATAATTTGGACCAAAGTTCGGAGGGCCTTCCGTTACGTATAGGCCATTTCAGCAGATGGGGTTTACGCTCACGGGATTTTTATCTCTCAAAAGTTTTGATTATTTTCCAGATGAACGGCACTGTAACTCGATACGAAATTGTTGGGGACCATCTCGGTCTTCGAACTGCTTATAGAATATTCAAAAAAGCTGAAAATTTGGATACTGTAAAATTGCCAGGATTTGATGACGTTTCACCGGACCAAATGTTCTTTTATAGTTATGCACTGGTGAGTCGTTTTCACAAATTTTAGACTTTCTTTAATTTGAATTTAAGATTTTTCAAATATTGACTTTAAACAACGTTTCACTTCAATTTTTCAGAGACAATGCGACATCTATAACCCAACTATAAGACCCGAATATCTGAAAGGCCGTCCCCACCCTACAAGCCGTTTTCGAGTGAATGGAGTCATTCAGAATCTTCCAGAATTCTCAGAAGCGTTTAATTGTCCCAAAACGGCGGCTATGAACTTGAAAAATAAATGTACACTTTTCTAAACTTTCCGGTTTTTCTTTTTCGGCCGACAATTGATAAAGCGGGCGCGCGCTCACGCTGACGAAAATCGACGGCTGCGAGACCCCGCAAATTCCGGGGAAAGAAAAAATCGGGGGAAAAAAACCGGGGAAAGCGGGCGGAGTCGAGAAAAACCGTGCGG</canonical>
            <polymorphic>TTTTGGCCCACAGGATACTTATTTCATTTTTAAAAATTATTCATGATGTGGTTTATTAGAAAAGTGTAGTTCTAGATTTTTTTTTCTATATTTTCTAAACTTTTCAAACAAAAAATTATCAGCGGCTTGCGTGAAACATTAAAAAATAAGAATTACCGTAATAACTACTTTTCAACTTTGAGACAGTTTATCTAGGTTGCTGTGAAAGATATCAAAAAGTAATCCACTAACGAAATGTTAATCATAATGTCAAAAGTATTTTGTCAGCTGACCACTTTTTGATATTTCGCATAAGAACCAAGATAATTTGGACCAAAGTTCGGAGGGCCTTCCGTTACGTATAGGCCATTTCAGCAGATGGGGTTTACGCTCACGGGATTTTTATCTCTCAAAAGTTTTGATTATTTTCCAGATGAACGGCACTGTAACTCGATACGAAATTGTTGGGGACCATCTCGGTCTTCGAACTGCTTATAGAATATTCAAAAAAGCTGAAAATWTGGATACTGTAAAATTGCCAGGATTTGATGACGTTTCACCGGACCAAATGTTCTTTTATAGTTATGCACTGGTGAGTCGTTTTCACAAATTTTAGACTTTCTTTAATTTGAATTTAAGATTTTTCAAATATTGACTTTAAACAACGTTTCACTTCAATTTTTCAGAGACAATGCGACATCTATAACCCAACTATAAGACCCGAATATCTGAAAGGCCGTCCCCACCCTACAAGCCGTTTTCGAGTGAATGGAGTCATTCAGAATCTTCCAGAATTCTCAGAAGCGTTTAATTGTCCCAAAACGGCGGCTATGAACTTGAAAAATAAATGTACACTTTTCTAAACTTTCCGGTTTTTCTTTTTCGGCCGACAATTGATAAAGCGGGCGCGCGCTCACGCTGACGAAAATCGACGGCTGCGAGACCCCGCAAATTCCGGGGAAAGAAAAAATCGGGGGAAAAAAACCGGGGAAAGCGGGCGGAGTCGAGAAAAACCGTGCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>496 161 158 91 71 23</canonical_bands>
                <polymorphic_bands>587 161 158 71 23</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>154 134 116 82 79 75 71 59 58 45 37 34 17 17 16 6</canonical_bands>
                <polymorphic_bands>154 134 116 82 79 75 74 71 59 45 37 34 17 17 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATAGGCCATTTCAGCAGAT</pcr_primer_p1>
		<pcr_primer_p2>GACTCACCAGTGCATAACTATAAA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GTATAGGCCATTTCAGCAGATGGGGTTTACGCTCACGGGATTTTTATCTCTCAAAAGTTTTGATTATTTTCCAGATGAACGGCACTGTAACTCGATACGAAATTGTTGGGGACCATCTCGGTCTTCGAACTGCTTATAGAATATTCAAAAAAGCTGAAAATTTGGATACTGTAAAATTGCCAGGATTTGATGACGTTTCACCGGACCAAATGTTCTTTTATAGTTATGCACTGGTGAGTC</canonical_amplicon>
		<polymorphic_amplicon>GTATAGGCCATTTCAGCAGATGGGGTTTACGCTCACGGGATTTTTATCTCTCAAAAGTTTTGATTATTTTCCAGATGAACGGCACTGTAACTCGATACGAAATTGTTGGGGACCATCTCGGTCTTCGAACTGCTTATAGAATATTCAAAAAAGCTGAAAATWTGGATACTGTAAAATTGCCAGGATTTGATGACGTTTCACCGGACCAAATGTTCTTTTATAGTTATGCACTGGTGAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26581</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>19677</contig_pos>
        <strand>+</strand>
        <context>TTCAAATATT[A/G]AYTTYAAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCACAAATTTTAGACTTTCTTTAATTTGAATTTAAGATTTTTCAAATATT</left_flank>
        <right_flank>ACTTTAAACAACGTTTCACTTCAATTTTTCAGAGACAATGCGACATCTAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACATTAAAAAATAAGAATTACCGTAATAACTACTTTTCAACTTTGAGACAGTTTATCTAGGTTGCTGTGAAAGATATCAAAAAGTAATCCACTAACGAAATGTTAATCATAATGTCAAAAGTATTTTGTCAGCTGACCACTTTTTGATATTTCGCATAAGAACCAAGATAATTTGGACCAAAGTTCGGAGGGCCTTCCGTTACGTATAGGCCATTTCAGCAGATGGGGTTTACGCTCACGGGATTTTTATCTCTCAAAAGTTTTGATTATTTTCCAGATGAACGGCACTGTAACTCGATACGAAATTGTTGGGGACCATCTCGGTCTTCGAACTGCTTATAGAATATTCAAAAAAGCTGAAAATTTGGATACTGTAAAATTGCCAGGATTTGATGACGTTTCACCGGACCAAATGTTCTTTTATAGTTATGCACTGGTGAGTCGTTTTCACAAATTTTAGACTTTCTTTAATTTGAATTTAAGATTTTTCAAATATTGACTTTAAACAACGTTTCACTTCAATTTTTCAGAGACAATGCGACATCTATAACCCAACTATAAGACCCGAATATCTGAAAGGCCGTCCCCACCCTACAAGCCGTTTTCGAGTGAATGGAGTCATTCAGAATCTTCCAGAATTCTCAGAAGCGTTTAATTGTCCCAAAACGGCGGCTATGAACTTGAAAAATAAATGTACACTTTTCTAAACTTTCCGGTTTTTCTTTTTCGGCCGACAATTGATAAAGCGGGCGCGCGCTCACGCTGACGAAAATCGACGGCTGCGAGACCCCGCAAATTCCGGGGAAAGAAAAAATCGGGGGAAAAAAACCGGGGAAAGCGGGCGGAGTCGAGAAAAACCGTGCGGCAAAACCGTGCCAGGGTTGCAATTTAGGCTCCGCCCCCTCATGACCGTGTCCAAATGTGCAGAAAAACCGTGCGGCAAAACTGCGCCAGGGTTGCATTTTAGGCTCCGCCCCCGACTCCGCCCACTTTCCCCG</canonical>
            <polymorphic>AAACATTAAAAAATAAGAATTACCGTAATAACTACTTTTCAACTTTGAGACAGTTTATCTAGGTTGCTGTGAAAGATATCAAAAAGTAATCCACTAACGAAATGTTAATCATAATGTCAAAAGTATTTTGTCAGCTGACCACTTTTTGATATTTCGCATAAGAACCAAGATAATTTGGACCAAAGTTCGGAGGGCCTTCCGTTACGTATAGGCCATTTCAGCAGATGGGGTTTACGCTCACGGGATTTTTATCTCTCAAAAGTTTTGATTATTTTCCAGATGAACGGCACTGTAACTCGATACGAAATTGTTGGGGACCATCTCGGTCTTCGAACTGCTTATAGAATATTCAAAAAAGCTGAAAATTTGGATACTGTAAAATTGCCAGGATTTGATGACGTTTCACCGGACCAAATGTTCTTTTATAGTTATGCACTGGTGAGTCGTTTTCACAAATTTTAGACTTTCTTTAATTTGAATTTAAGATTTTTCAAATATTRACTTTAAACAACGTTTCACTTCAATTTTTCAGAGACAATGCGACATCTATAACCCAACTATAAGACCCGAATATCTGAAAGGCCGTCCCCACCCTACAAGCCGTTTTCGAGTGAATGGAGTCATTCAGAATCTTCCAGAATTCTCAGAAGCGTTTAATTGTCCCAAAACGGCGGCTATGAACTTGAAAAATAAATGTACACTTTTCTAAACTTTCCGGTTTTTCTTTTTCGGCCGACAATTGATAAAGCGGGCGCGCGCTCACGCTGACGAAAATCGACGGCTGCGAGACCCCGCAAATTCCGGGGAAAGAAAAAATCGGGGGAAAAAAACCGGGGAAAGCGGGCGGAGTCGAGAAAAACCGTGCGGCAAAACCGTGCCAGGGTTGCAATTTAGGCTCCGCCCCCTCATGACCGTGTCCAAATGTGCAGAAAAACCGTGCGGCAAAACTGCGCCAGGGTTGCATTTTAGGCTCCGCCCCCGACTCCGCCCACTTTCCCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCTTCGAACTGCTTATAGAAT</pcr_primer_p1>
		<pcr_primer_p2>CGGGTCTTATAGTTGGGTTATAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GGTCTTCGAACTGCTTATAGAATATTCAAAAAAGCTGAAAATTTGGATACTGTAAAATTGCCAGGATTTGATGACGTTTCACCGGACCAAATGTTCTTTTATAGTTATGCACTGGTGAGTCGTTTTCACAAATTTTAGACTTTCTTTAATTTGAATTTAAGATTTTTCAAATATTGACTTTAAACAACGTTTCACTTCAATTTTTCAGAGACAATGCGACATCTATAACCCAACTATAAGACCCG</canonical_amplicon>
		<polymorphic_amplicon>GGTCTTCGAACTGCTTATAGAATATTCAAAAAAGCTGAAAATTTGGATACTGTAAAATTGCCAGGATTTGATGACGTTTCACCGGACCAAATGTTCTTTTATAGTTATGCACTGGTGAGTCGTTTTCACAAATTTTAGACTTTCTTTAATTTGAATTTAAGATTTTTCAAATATTRACTTTAAACAACGTTTCACTTCAATTTTTCAGAGACAATGCGACATCTATAACCCAACTATAAGACCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26582</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>19679</contig_pos>
        <strand>+</strand>
        <context>CAAATATTRA[C/T]TTYAAACAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAAATTTTAGACTTTCTTTAATTTGAATTTAAGATTTTTCAAATATTGA</left_flank>
        <right_flank>TTTAAACAACGTTTCACTTCAATTTTTCAGAGACAATGCGACATCTATAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATTAAAAAATAAGAATTACCGTAATAACTACTTTTCAACTTTGAGACAGTTTATCTAGGTTGCTGTGAAAGATATCAAAAAGTAATCCACTAACGAAATGTTAATCATAATGTCAAAAGTATTTTGTCAGCTGACCACTTTTTGATATTTCGCATAAGAACCAAGATAATTTGGACCAAAGTTCGGAGGGCCTTCCGTTACGTATAGGCCATTTCAGCAGATGGGGTTTACGCTCACGGGATTTTTATCTCTCAAAAGTTTTGATTATTTTCCAGATGAACGGCACTGTAACTCGATACGAAATTGTTGGGGACCATCTCGGTCTTCGAACTGCTTATAGAATATTCAAAAAAGCTGAAAATTTGGATACTGTAAAATTGCCAGGATTTGATGACGTTTCACCGGACCAAATGTTCTTTTATAGTTATGCACTGGTGAGTCGTTTTCACAAATTTTAGACTTTCTTTAATTTGAATTTAAGATTTTTCAAATATTGACTTTAAACAACGTTTCACTTCAATTTTTCAGAGACAATGCGACATCTATAACCCAACTATAAGACCCGAATATCTGAAAGGCCGTCCCCACCCTACAAGCCGTTTTCGAGTGAATGGAGTCATTCAGAATCTTCCAGAATTCTCAGAAGCGTTTAATTGTCCCAAAACGGCGGCTATGAACTTGAAAAATAAATGTACACTTTTCTAAACTTTCCGGTTTTTCTTTTTCGGCCGACAATTGATAAAGCGGGCGCGCGCTCACGCTGACGAAAATCGACGGCTGCGAGACCCCGCAAATTCCGGGGAAAGAAAAAATCGGGGGAAAAAAACCGGGGAAAGCGGGCGGAGTCGAGAAAAACCGTGCGGCAAAACCGTGCCAGGGTTGCAATTTAGGCTCCGCCCCCTCATGACCGTGTCCAAATGTGCAGAAAAACCGTGCGGCAAAACTGCGCCAGGGTTGCATTTTAGGCTCCGCCCCCGACTCCGCCCACTTTCCCCGGT</canonical>
            <polymorphic>ACATTAAAAAATAAGAATTACCGTAATAACTACTTTTCAACTTTGAGACAGTTTATCTAGGTTGCTGTGAAAGATATCAAAAAGTAATCCACTAACGAAATGTTAATCATAATGTCAAAAGTATTTTGTCAGCTGACCACTTTTTGATATTTCGCATAAGAACCAAGATAATTTGGACCAAAGTTCGGAGGGCCTTCCGTTACGTATAGGCCATTTCAGCAGATGGGGTTTACGCTCACGGGATTTTTATCTCTCAAAAGTTTTGATTATTTTCCAGATGAACGGCACTGTAACTCGATACGAAATTGTTGGGGACCATCTCGGTCTTCGAACTGCTTATAGAATATTCAAAAAAGCTGAAAATTTGGATACTGTAAAATTGCCAGGATTTGATGACGTTTCACCGGACCAAATGTTCTTTTATAGTTATGCACTGGTGAGTCGTTTTCACAAATTTTAGACTTTCTTTAATTTGAATTTAAGATTTTTCAAATATTGAYTTTAAACAACGTTTCACTTCAATTTTTCAGAGACAATGCGACATCTATAACCCAACTATAAGACCCGAATATCTGAAAGGCCGTCCCCACCCTACAAGCCGTTTTCGAGTGAATGGAGTCATTCAGAATCTTCCAGAATTCTCAGAAGCGTTTAATTGTCCCAAAACGGCGGCTATGAACTTGAAAAATAAATGTACACTTTTCTAAACTTTCCGGTTTTTCTTTTTCGGCCGACAATTGATAAAGCGGGCGCGCGCTCACGCTGACGAAAATCGACGGCTGCGAGACCCCGCAAATTCCGGGGAAAGAAAAAATCGGGGGAAAAAAACCGGGGAAAGCGGGCGGAGTCGAGAAAAACCGTGCGGCAAAACCGTGCCAGGGTTGCAATTTAGGCTCCGCCCCCTCATGACCGTGTCCAAATGTGCAGAAAAACCGTGCGGCAAAACTGCGCCAGGGTTGCATTTTAGGCTCCGCCCCCGACTCCGCCCACTTTCCCCGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCTTCGAACTGCTTATAGAAT</pcr_primer_p1>
		<pcr_primer_p2>CGGGTCTTATAGTTGGGTTATAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GGTCTTCGAACTGCTTATAGAATATTCAAAAAAGCTGAAAATTTGGATACTGTAAAATTGCCAGGATTTGATGACGTTTCACCGGACCAAATGTTCTTTTATAGTTATGCACTGGTGAGTCGTTTTCACAAATTTTAGACTTTCTTTAATTTGAATTTAAGATTTTTCAAATATTGACTTTAAACAACGTTTCACTTCAATTTTTCAGAGACAATGCGACATCTATAACCCAACTATAAGACCCG</canonical_amplicon>
		<polymorphic_amplicon>GGTCTTCGAACTGCTTATAGAATATTCAAAAAAGCTGAAAATTTGGATACTGTAAAATTGCCAGGATTTGATGACGTTTCACCGGACCAAATGTTCTTTTATAGTTATGCACTGGTGAGTCGTTTTCACAAATTTTAGACTTTCTTTAATTTGAATTTAAGATTTTTCAAATATTGAYTTTAAACAACGTTTCACTTCAATTTTTCAGAGACAATGCGACATCTATAACCCAACTATAAGACCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26583</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>19682</contig_pos>
        <strand>+</strand>
        <context>ATATTRAYTT[C/T]AAACAACGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTTAGACTTTCTTTAATTTGAATTTAAGATTTTTCAAATATTGACTT</left_flank>
        <right_flank>AAACAACGTTTCACTTCAATTTTTCAGAGACAATGCGACATCTATAACCC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAAAAAATAAGAATTACCGTAATAACTACTTTTCAACTTTGAGACAGTTTATCTAGGTTGCTGTGAAAGATATCAAAAAGTAATCCACTAACGAAATGTTAATCATAATGTCAAAAGTATTTTGTCAGCTGACCACTTTTTGATATTTCGCATAAGAACCAAGATAATTTGGACCAAAGTTCGGAGGGCCTTCCGTTACGTATAGGCCATTTCAGCAGATGGGGTTTACGCTCACGGGATTTTTATCTCTCAAAAGTTTTGATTATTTTCCAGATGAACGGCACTGTAACTCGATACGAAATTGTTGGGGACCATCTCGGTCTTCGAACTGCTTATAGAATATTCAAAAAAGCTGAAAATTTGGATACTGTAAAATTGCCAGGATTTGATGACGTTTCACCGGACCAAATGTTCTTTTATAGTTATGCACTGGTGAGTCGTTTTCACAAATTTTAGACTTTCTTTAATTTGAATTTAAGATTTTTCAAATATTGACTTTAAACAACGTTTCACTTCAATTTTTCAGAGACAATGCGACATCTATAACCCAACTATAAGACCCGAATATCTGAAAGGCCGTCCCCACCCTACAAGCCGTTTTCGAGTGAATGGAGTCATTCAGAATCTTCCAGAATTCTCAGAAGCGTTTAATTGTCCCAAAACGGCGGCTATGAACTTGAAAAATAAATGTACACTTTTCTAAACTTTCCGGTTTTTCTTTTTCGGCCGACAATTGATAAAGCGGGCGCGCGCTCACGCTGACGAAAATCGACGGCTGCGAGACCCCGCAAATTCCGGGGAAAGAAAAAATCGGGGGAAAAAAACCGGGGAAAGCGGGCGGAGTCGAGAAAAACCGTGCGGCAAAACCGTGCCAGGGTTGCAATTTAGGCTCCGCCCCCTCATGACCGTGTCCAAATGTGCAGAAAAACCGTGCGGCAAAACTGCGCCAGGGTTGCATTTTAGGCTCCGCCCCCGACTCCGCCCACTTTCCCCGGTTAT</canonical>
            <polymorphic>TTAAAAAATAAGAATTACCGTAATAACTACTTTTCAACTTTGAGACAGTTTATCTAGGTTGCTGTGAAAGATATCAAAAAGTAATCCACTAACGAAATGTTAATCATAATGTCAAAAGTATTTTGTCAGCTGACCACTTTTTGATATTTCGCATAAGAACCAAGATAATTTGGACCAAAGTTCGGAGGGCCTTCCGTTACGTATAGGCCATTTCAGCAGATGGGGTTTACGCTCACGGGATTTTTATCTCTCAAAAGTTTTGATTATTTTCCAGATGAACGGCACTGTAACTCGATACGAAATTGTTGGGGACCATCTCGGTCTTCGAACTGCTTATAGAATATTCAAAAAAGCTGAAAATTTGGATACTGTAAAATTGCCAGGATTTGATGACGTTTCACCGGACCAAATGTTCTTTTATAGTTATGCACTGGTGAGTCGTTTTCACAAATTTTAGACTTTCTTTAATTTGAATTTAAGATTTTTCAAATATTGACTTYAAACAACGTTTCACTTCAATTTTTCAGAGACAATGCGACATCTATAACCCAACTATAAGACCCGAATATCTGAAAGGCCGTCCCCACCCTACAAGCCGTTTTCGAGTGAATGGAGTCATTCAGAATCTTCCAGAATTCTCAGAAGCGTTTAATTGTCCCAAAACGGCGGCTATGAACTTGAAAAATAAATGTACACTTTTCTAAACTTTCCGGTTTTTCTTTTTCGGCCGACAATTGATAAAGCGGGCGCGCGCTCACGCTGACGAAAATCGACGGCTGCGAGACCCCGCAAATTCCGGGGAAAGAAAAAATCGGGGGAAAAAAACCGGGGAAAGCGGGCGGAGTCGAGAAAAACCGTGCGGCAAAACCGTGCCAGGGTTGCAATTTAGGCTCCGCCCCCTCATGACCGTGTCCAAATGTGCAGAAAAACCGTGCGGCAAAACTGCGCCAGGGTTGCATTTTAGGCTCCGCCCCCGACTCCGCCCACTTTCCCCGGTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>365 351 150 99 23 11 1</canonical_bands>
                <polymorphic_bands>365 351 173 99 11 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTCTTCGAACTGCTTATAGAAT</pcr_primer_p1>
		<pcr_primer_p2>CGGGTCTTATAGTTGGGTTATAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GGTCTTCGAACTGCTTATAGAATATTCAAAAAAGCTGAAAATTTGGATACTGTAAAATTGCCAGGATTTGATGACGTTTCACCGGACCAAATGTTCTTTTATAGTTATGCACTGGTGAGTCGTTTTCACAAATTTTAGACTTTCTTTAATTTGAATTTAAGATTTTTCAAATATTGACTTTAAACAACGTTTCACTTCAATTTTTCAGAGACAATGCGACATCTATAACCCAACTATAAGACCCG</canonical_amplicon>
		<polymorphic_amplicon>GGTCTTCGAACTGCTTATAGAATATTCAAAAAAGCTGAAAATTTGGATACTGTAAAATTGCCAGGATTTGATGACGTTTCACCGGACCAAATGTTCTTTTATAGTTATGCACTGGTGAGTCGTTTTCACAAATTTTAGACTTTCTTTAATTTGAATTTAAGATTTTTCAAATATTGACTTYAAACAACGTTTCACTTCAATTTTTCAGAGACAATGCGACATCTATAACCCAACTATAAGACCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26584</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>19699</contig_pos>
        <strand>+</strand>
        <context>CGTTTCACTT[C/T]AATTTTTCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTGAATTTAAGATTTTTCAAATATTGACTTTAAACAACGTTTCACTT</left_flank>
        <right_flank>AATTTTTCAGAGACAATGCGACATCTATAACCCAACTATAAGACCCGAAT</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGTAATAACTACTTTTCAACTTTGAGACAGTTTATCTAGGTTGCTGTGAAAGATATCAAAAAGTAATCCACTAACGAAATGTTAATCATAATGTCAAAAGTATTTTGTCAGCTGACCACTTTTTGATATTTCGCATAAGAACCAAGATAATTTGGACCAAAGTTCGGAGGGCCTTCCGTTACGTATAGGCCATTTCAGCAGATGGGGTTTACGCTCACGGGATTTTTATCTCTCAAAAGTTTTGATTATTTTCCAGATGAACGGCACTGTAACTCGATACGAAATTGTTGGGGACCATCTCGGTCTTCGAACTGCTTATAGAATATTCAAAAAAGCTGAAAATTTGGATACTGTAAAATTGCCAGGATTTGATGACGTTTCACCGGACCAAATGTTCTTTTATAGTTATGCACTGGTGAGTCGTTTTCACAAATTTTAGACTTTCTTTAATTTGAATTTAAGATTTTTCAAATATTGACTTTAAACAACGTTTCACTTCAATTTTTCAGAGACAATGCGACATCTATAACCCAACTATAAGACCCGAATATCTGAAAGGCCGTCCCCACCCTACAAGCCGTTTTCGAGTGAATGGAGTCATTCAGAATCTTCCAGAATTCTCAGAAGCGTTTAATTGTCCCAAAACGGCGGCTATGAACTTGAAAAATAAATGTACACTTTTCTAAACTTTCCGGTTTTTCTTTTTCGGCCGACAATTGATAAAGCGGGCGCGCGCTCACGCTGACGAAAATCGACGGCTGCGAGACCCCGCAAATTCCGGGGAAAGAAAAAATCGGGGGAAAAAAACCGGGGAAAGCGGGCGGAGTCGAGAAAAACCGTGCGGCAAAACCGTGCCAGGGTTGCAATTTAGGCTCCGCCCCCTCATGACCGTGTCCAAATGTGCAGAAAAACCGTGCGGCAAAACTGCGCCAGGGTTGCATTTTAGGCTCCGCCCCCGACTCCGCCCACTTTCCCCGGTTATTTTTCCCCGATTTTTTC</canonical>
            <polymorphic>CCGTAATAACTACTTTTCAACTTTGAGACAGTTTATCTAGGTTGCTGTGAAAGATATCAAAAAGTAATCCACTAACGAAATGTTAATCATAATGTCAAAAGTATTTTGTCAGCTGACCACTTTTTGATATTTCGCATAAGAACCAAGATAATTTGGACCAAAGTTCGGAGGGCCTTCCGTTACGTATAGGCCATTTCAGCAGATGGGGTTTACGCTCACGGGATTTTTATCTCTCAAAAGTTTTGATTATTTTCCAGATGAACGGCACTGTAACTCGATACGAAATTGTTGGGGACCATCTCGGTCTTCGAACTGCTTATAGAATATTCAAAAAAGCTGAAAATTTGGATACTGTAAAATTGCCAGGATTTGATGACGTTTCACCGGACCAAATGTTCTTTTATAGTTATGCACTGGTGAGTCGTTTTCACAAATTTTAGACTTTCTTTAATTTGAATTTAAGATTTTTCAAATATTGACTTTAAACAACGTTTCACTTYAATTTTTCAGAGACAATGCGACATCTATAACCCAACTATAAGACCCGAATATCTGAAAGGCCGTCCCCACCCTACAAGCCGTTTTCGAGTGAATGGAGTCATTCAGAATCTTCCAGAATTCTCAGAAGCGTTTAATTGTCCCAAAACGGCGGCTATGAACTTGAAAAATAAATGTACACTTTTCTAAACTTTCCGGTTTTTCTTTTTCGGCCGACAATTGATAAAGCGGGCGCGCGCTCACGCTGACGAAAATCGACGGCTGCGAGACCCCGCAAATTCCGGGGAAAGAAAAAATCGGGGGAAAAAAACCGGGGAAAGCGGGCGGAGTCGAGAAAAACCGTGCGGCAAAACCGTGCCAGGGTTGCAATTTAGGCTCCGCCCCCTCATGACCGTGTCCAAATGTGCAGAAAAACCGTGCGGCAAAACTGCGCCAGGGTTGCATTTTAGGCTCCGCCCCCGACTCCGCCCACTTTCCCCGGTTATTTTTCCCCGATTTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCTTCGAACTGCTTATAGAAT</pcr_primer_p1>
		<pcr_primer_p2>CAGATATTCGGGTCTTATAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GGTCTTCGAACTGCTTATAGAATATTCAAAAAAGCTGAAAATTTGGATACTGTAAAATTGCCAGGATTTGATGACGTTTCACCGGACCAAATGTTCTTTTATAGTTATGCACTGGTGAGTCGTTTTCACAAATTTTAGACTTTCTTTAATTTGAATTTAAGATTTTTCAAATATTGACTTTAAACAACGTTTCACTTCAATTTTTCAGAGACAATGCGACATCTATAACCCAACTATAAGACCCGAATATCTG</canonical_amplicon>
		<polymorphic_amplicon>GGTCTTCGAACTGCTTATAGAATATTCAAAAAAGCTGAAAATTTGGATACTGTAAAATTGCCAGGATTTGATGACGTTTCACCGGACCAAATGTTCTTTTATAGTTATGCACTGGTGAGTCGTTTTCACAAATTTTAGACTTTCTTTAATTTGAATTTAAGATTTTTCAAATATTGACTTTAAACAACGTTTCACTTYAATTTTTCAGAGACAATGCGACATCTATAACCCAACTATAAGACCCGAATATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26585</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>21026</contig_pos>
        <strand></strand>
        <context>tctattagct[T/C]gaccattttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGTCAGCTTTTTTCAAACATCTTCATTATTTTTTCGATTTTCTATTAGCT</left_flank>
        <right_flank>GACCATTTTTTCACAACAATGTGAACGAAATGACTAGATTTCTACAGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAGTTCGAATCCGAATTTCGAATGACTGATGATAAACTTTCAATATTCCGAATTTCCGGAAATCTGAGTATCTGAAATCCTGTTACCGTAAAACCTGTATTAGAAGGACCCCCATAATAGAAGGGCCCTCTGTAAAAAAGCAAAAACCATATTTCGGCTCCTATTGAGAACGGGCTAAAATTTTAATGAGTTTGGTTTCAGCATGTTCGAGAGTACCTTTGTGCAAGTTTTGAGCAAATTCTCAACCGGTATCTGAAAAAAGTTCCCTTGTAAGGGGGTACCCCATGGCATTTTTTCAATAAACTTTTTTGAAAAGATAAGAATACTCTTCCAGATTGTTTAGCAACATTGGAAAATACAACTTACAGTCACAAAAACACTAAAAACTTTCACTATGTCTTTCAAAAATTCGCTCTCAAAGTGAGAAATCGGTATTTTCCTGAAATAGGTCAGCTTTTTTCAAACATCTTCATTATTTTTTCGATTTTCTATTAGCTTGACCATTTTTTCACAACAATGTGAACGAAATGACTAGATTTCTACAGAAAATATTGTAAAAAAGCATTGGCGACAAAAAACCAACAAAATAACAATAATTAGTGAGCAAAAGTGTTTTTAACTTTCCATAAGGAGTAATTTTGCTTTTTTTGTTTCTTATGAGCTTTTTTCCTTTTTTTTTTCGGGAATCTGATCGAAATTCAGTTCGAAACTGTTTTTGAACGAAAAAACTAAATTTGAATGTCGCGCGAGATTTTGTTCAACGGGGCGCACTTTCTGACGATCGTTTGCAGCCGTCGATTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCTCTTCCTTCCCGTCCGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAACAGAAGGTCGCTGGTTCGATTCCAGCATGAGGCACCGAACTTCTTTTTTGTTTTTTATTTTATTTATAAGAGGTAGGGAAGACGATTTCGAGGAAATAATAA</canonical>
            <polymorphic>GAAAGTTCGAATCCGAATTTCGAATGACTGATGATAAACTTTCAATATTCCGAATTTCCGGAAATCTGAGTATCTGAAATCCTGTTACCGTAAAACCTGTATTAGAAGGACCCCCATAATAGAAGGGCCCTCTGTAAAAAAGCAAAAACCATATTTCGGCTCCTATTGAGAACGGGCTAAAATTTTAATGAGTTTGGTTTCAGCATGTTCGAGAGTACCTTTGTGCAAGTTTTGAGCAAATTCTCAACCGGTATCTGAAAAAAGTTCCCTTGTAAGGGGGTACCCCATGGCATTTTTTCAATAAACTTTTTTGAAAAGATAAGAATACTCTTCCAGATTGTTTAGCAACATTGGAAAATACAACTTACAGTCACAAAAACACTAAAAACTTTCACTATGTCTTTCAAAAATTCGCTCTCAAAGTGAGAAATCGGTATTTTCCTGAAATAGGTCAGCTTTTTTCAAACATCTTCATTATTTTTTCGATTTTCTATTAGCTYGACCATTTTTTCACAACAATGTGAACGAAATGACTAGATTTCTACAGAAAATATTGTAAAAAAGCATTGGCGACAAAAAACCAACAAAATAACAATAATTAGTGAGCAAAAGTGTTTTTAACTTTCCATAAGGAGTAATTTTGCTTTTTTTGTTTCTTATGAGCTTTTTTCCTTTTTTTTTTCGGGAATCTGATCGAAATTCAGTTCGAAACTGTTTTTGAACGAAAAAACTAAATTTGAATGTCGCGCGAGATTTTGTTCAACGGGGCGCACTTTCTGACGATCGTTTGCAGCCGTCGATTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCTCTTCCTTCCCGTCCGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAACAGAAGGTCGCTGGTTCGATTCCAGCATGAGGCACCGAACTTCTTTTTTGTTTTTTATTTTATTTATAAGAGGTAGGGAAGACGATTTCGAGGAAATAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTGAGAACGGGCTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGGTCAGATGACATACACAGG</pcr_primer_p2>
		<pcr_amplicon_size>684</pcr_amplicon_size>
		<canonical_amplicon>CTATTGAGAACGGGCTAAAATTTTAATGAGTTTGGTTTCAGCATGTTCGAGAGTACCTTTGTGCAAGTTTTGAGCAAATTCTCAACCGGTATCTGAAAAAAGTTCCCTTGTAAGGGGGTACCCCATGGCATTTTTTCAATAAACTTTTTTGAAAAGATAAGAATACTCTTCCAGATTGTTTAGCAACATTGGAAAATACAACTTACAGTCACAAAAACACTAAAAACTTTCACTATGTCTTTCAAAAATTCGCTCTCAAAGTGAGAAATCGGTATTTTCCTGAAATAGGTCAGCTTTTTTCAAACATCTTCATTATTTTTTCGATTTTCTATTAGCTTGACCATTTTTTCACAACAATGTGAACGAAATGACTAGATTTCTACAGAAAATATTGTAAAAAAGCATTGGCGACAAAAAACCAACAAAATAACAATAATTAGTGAGCAAAAGTGTTTTTAACTTTCCATAAGGAGTAATTTTGCTTTTTTTGTTTCTTATGAGCTTTTTTCCTTTTTTTTTTCGGGAATCTGATCGAAATTCAGTTCGAAACTGTTTTTGAACGAAAAAACTAAATTTGAATGTCGCGCGAGATTTTGTTCAACGGGGCGCACTTTCTGACGATCGTTTGCAGCCGTCGATTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCT</canonical_amplicon>
		<polymorphic_amplicon>CTATTGAGAACGGGCTAAAATTTTAATGAGTTTGGTTTCAGCATGTTCGAGAGTACCTTTGTGCAAGTTTTGAGCAAATTCTCAACCGGTATCTGAAAAAAGTTCCCTTGTAAGGGGGTACCCCATGGCATTTTTTCAATAAACTTTTTTGAAAAGATAAGAATACTCTTCCAGATTGTTTAGCAACATTGGAAAATACAACTTACAGTCACAAAAACACTAAAAACTTTCACTATGTCTTTCAAAAATTCGCTCTCAAAGTGAGAAATCGGTATTTTCCTGAAATAGGTCAGCTTTTTTCAAACATCTTCATTATTTTTTCGATTTTCTATTAGCTYGACCATTTTTTCACAACAATGTGAACGAAATGACTAGATTTCTACAGAAAATATTGTAAAAAAGCATTGGCGACAAAAAACCAACAAAATAACAATAATTAGTGAGCAAAAGTGTTTTTAACTTTCCATAAGGAGTAATTTTGCTTTTTTTGTTTCTTATGAGCTTTTTTCCTTTTTTTTTTCGGGAATCTGATCGAAATTCAGTTCGAAACTGTTTTTGAACGAAAAAACTAAATTTGAATGTCGCGCGAGATTTTGTTCAACGGGGCGCACTTTCTGACGATCGTTTGCAGCCGTCGATTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26586</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>21129</contig_pos>
        <strand></strand>
        <context>caataattag[T/C]gagcaaaagt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTGTAAAAAAGCATTGGCGACAAAAAACCAACAAAATAACAATAATTAG</left_flank>
        <right_flank>GAGCAAAAGTGTTTTTAACTTTCCATAAGGAGTAATTTTGCTTTTTTTGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAGGACCCCCATAATAGAAGGGCCCTCTGTAAAAAAGCAAAAACCATATTTCGGCTCCTATTGAGAACGGGCTAAAATTTTAATGAGTTTGGTTTCAGCATGTTCGAGAGTACCTTTGTGCAAGTTTTGAGCAAATTCTCAACCGGTATCTGAAAAAAGTTCCCTTGTAAGGGGGTACCCCATGGCATTTTTTCAATAAACTTTTTTGAAAAGATAAGAATACTCTTCCAGATTGTTTAGCAACATTGGAAAATACAACTTACAGTCACAAAAACACTAAAAACTTTCACTATGTCTTTCAAAAATTCGCTCTCAAAGTGAGAAATCGGTATTTTCCTGAAATAGGTCAGCTTTTTTCAAACATCTTCATTATTTTTTCGATTTTCTATTAGCTTGACCATTTTTTCACAACAATGTGAACGAAATGACTAGATTTCTACAGAAAATATTGTAAAAAAGCATTGGCGACAAAAAACCAACAAAATAACAATAATTAGTGAGCAAAAGTGTTTTTAACTTTCCATAAGGAGTAATTTTGCTTTTTTTGTTTCTTATGAGCTTTTTTCCTTTTTTTTTTCGGGAATCTGATCGAAATTCAGTTCGAAACTGTTTTTGAACGAAAAAACTAAATTTGAATGTCGCGCGAGATTTTGTTCAACGGGGCGCACTTTCTGACGATCGTTTGCAGCCGTCGATTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCTCTTCCTTCCCGTCCGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAACAGAAGGTCGCTGGTTCGATTCCAGCATGAGGCACCGAACTTCTTTTTTGTTTTTTATTTTATTTATAAGAGGTAGGGAAGACGATTTCGAGGAAATAATAAAATTTTGAGATCTCTGAAAAGAAGAAATTGAAAAATGCACCTGTCTTTGACTAATTTAGCATTTAATTCAGGAAGTGACTCTTCATTCATTCTTCTTTTCGTC</canonical>
            <polymorphic>AGAAGGACCCCCATAATAGAAGGGCCCTCTGTAAAAAAGCAAAAACCATATTTCGGCTCCTATTGAGAACGGGCTAAAATTTTAATGAGTTTGGTTTCAGCATGTTCGAGAGTACCTTTGTGCAAGTTTTGAGCAAATTCTCAACCGGTATCTGAAAAAAGTTCCCTTGTAAGGGGGTACCCCATGGCATTTTTTCAATAAACTTTTTTGAAAAGATAAGAATACTCTTCCAGATTGTTTAGCAACATTGGAAAATACAACTTACAGTCACAAAAACACTAAAAACTTTCACTATGTCTTTCAAAAATTCGCTCTCAAAGTGAGAAATCGGTATTTTCCTGAAATAGGTCAGCTTTTTTCAAACATCTTCATTATTTTTTCGATTTTCTATTAGCTTGACCATTTTTTCACAACAATGTGAACGAAATGACTAGATTTCTACAGAAAATATTGTAAAAAAGCATTGGCGACAAAAAACCAACAAAATAACAATAATTAGYGAGCAAAAGTGTTTTTAACTTTCCATAAGGAGTAATTTTGCTTTTTTTGTTTCTTATGAGCTTTTTTCCTTTTTTTTTTCGGGAATCTGATCGAAATTCAGTTCGAAACTGTTTTTGAACGAAAAAACTAAATTTGAATGTCGCGCGAGATTTTGTTCAACGGGGCGCACTTTCTGACGATCGTTTGCAGCCGTCGATTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCTCTTCCTTCCCGTCCGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAACAGAAGGTCGCTGGTTCGATTCCAGCATGAGGCACCGAACTTCTTTTTTGTTTTTTATTTTATTTATAAGAGGTAGGGAAGACGATTTCGAGGAAATAATAAAATTTTGAGATCTCTGAAAAGAAGAAATTGAAAAATGCACCTGTCTTTGACTAATTTAGCATTTAATTCAGGAAGTGACTCTTCATTCATTCTTCTTTTCGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>158 148 122 107 88 81 59 55 46 38 31 26 13 10 10 8</canonical_bands>
                <polymorphic_bands>158 148 122 107 91 88 59 55 46 38 31 26 13 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTGAGAACGGGCTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGGTCAGATGACATACACAGG</pcr_primer_p2>
		<pcr_amplicon_size>684</pcr_amplicon_size>
		<canonical_amplicon>CTATTGAGAACGGGCTAAAATTTTAATGAGTTTGGTTTCAGCATGTTCGAGAGTACCTTTGTGCAAGTTTTGAGCAAATTCTCAACCGGTATCTGAAAAAAGTTCCCTTGTAAGGGGGTACCCCATGGCATTTTTTCAATAAACTTTTTTGAAAAGATAAGAATACTCTTCCAGATTGTTTAGCAACATTGGAAAATACAACTTACAGTCACAAAAACACTAAAAACTTTCACTATGTCTTTCAAAAATTCGCTCTCAAAGTGAGAAATCGGTATTTTCCTGAAATAGGTCAGCTTTTTTCAAACATCTTCATTATTTTTTCGATTTTCTATTAGCTTGACCATTTTTTCACAACAATGTGAACGAAATGACTAGATTTCTACAGAAAATATTGTAAAAAAGCATTGGCGACAAAAAACCAACAAAATAACAATAATTAGTGAGCAAAAGTGTTTTTAACTTTCCATAAGGAGTAATTTTGCTTTTTTTGTTTCTTATGAGCTTTTTTCCTTTTTTTTTTCGGGAATCTGATCGAAATTCAGTTCGAAACTGTTTTTGAACGAAAAAACTAAATTTGAATGTCGCGCGAGATTTTGTTCAACGGGGCGCACTTTCTGACGATCGTTTGCAGCCGTCGATTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCT</canonical_amplicon>
		<polymorphic_amplicon>CTATTGAGAACGGGCTAAAATTTTAATGAGTTTGGTTTCAGCATGTTCGAGAGTACCTTTGTGCAAGTTTTGAGCAAATTCTCAACCGGTATCTGAAAAAAGTTCCCTTGTAAGGGGGTACCCCATGGCATTTTTTCAATAAACTTTTTTGAAAAGATAAGAATACTCTTCCAGATTGTTTAGCAACATTGGAAAATACAACTTACAGTCACAAAAACACTAAAAACTTTCACTATGTCTTTCAAAAATTCGCTCTCAAAGTGAGAAATCGGTATTTTCCTGAAATAGGTCAGCTTTTTTCAAACATCTTCATTATTTTTTCGATTTTCTATTAGCTTGACCATTTTTTCACAACAATGTGAACGAAATGACTAGATTTCTACAGAAAATATTGTAAAAAAGCATTGGCGACAAAAAACCAACAAAATAACAATAATTAGYGAGCAAAAGTGTTTTTAACTTTCCATAAGGAGTAATTTTGCTTTTTTTGTTTCTTATGAGCTTTTTTCCTTTTTTTTTTCGGGAATCTGATCGAAATTCAGTTCGAAACTGTTTTTGAACGAAAAAACTAAATTTGAATGTCGCGCGAGATTTTGTTCAACGGGGCGCACTTTCTGACGATCGTTTGCAGCCGTCGATTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26587</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>21182</contig_pos>
        <strand></strand>
        <context>ttttttgttt[C/T]ttatgagctt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCAAAAGTGTTTTTAACTTTCCATAAGGAGTAATTTTGCTTTTTTTGTTT</left_flank>
        <right_flank>TTATGAGCTTTTTTCCTTTTTTTTTTCGGGAATCTGATCGAAATTCAGTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGCTCCTATTGAGAACGGGCTAAAATTTTAATGAGTTTGGTTTCAGCATGTTCGAGAGTACCTTTGTGCAAGTTTTGAGCAAATTCTCAACCGGTATCTGAAAAAAGTTCCCTTGTAAGGGGGTACCCCATGGCATTTTTTCAATAAACTTTTTTGAAAAGATAAGAATACTCTTCCAGATTGTTTAGCAACATTGGAAAATACAACTTACAGTCACAAAAACACTAAAAACTTTCACTATGTCTTTCAAAAATTCGCTCTCAAAGTGAGAAATCGGTATTTTCCTGAAATAGGTCAGCTTTTTTCAAACATCTTCATTATTTTTTCGATTTTCTATTAGCTTGACCATTTTTTCACAACAATGTGAACGAAATGACTAGATTTCTACAGAAAATATTGTAAAAAAGCATTGGCGACAAAAAACCAACAAAATAACAATAATTAGTGAGCAAAAGTGTTTTTAACTTTCCATAAGGAGTAATTTTGCTTTTTTTGTTTCTTATGAGCTTTTTTCCTTTTTTTTTTCGGGAATCTGATCGAAATTCAGTTCGAAACTGTTTTTGAACGAAAAAACTAAATTTGAATGTCGCGCGAGATTTTGTTCAACGGGGCGCACTTTCTGACGATCGTTTGCAGCCGTCGATTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCTCTTCCTTCCCGTCCGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAACAGAAGGTCGCTGGTTCGATTCCAGCATGAGGCACCGAACTTCTTTTTTGTTTTTTATTTTATTTATAAGAGGTAGGGAAGACGATTTCGAGGAAATAATAAAATTTTGAGATCTCTGAAAAGAAGAAATTGAAAAATGCACCTGTCTTTGACTAATTTAGCATTTAATTCAGGAAGTGACTCTTCATTCATTCTTCTTTTCGTCAGAGTCTCAAAAATTACGTAGCCAAATTCTTGCTGAATGAATTTCTTAATTTT</canonical>
            <polymorphic>CGGCTCCTATTGAGAACGGGCTAAAATTTTAATGAGTTTGGTTTCAGCATGTTCGAGAGTACCTTTGTGCAAGTTTTGAGCAAATTCTCAACCGGTATCTGAAAAAAGTTCCCTTGTAAGGGGGTACCCCATGGCATTTTTTCAATAAACTTTTTTGAAAAGATAAGAATACTCTTCCAGATTGTTTAGCAACATTGGAAAATACAACTTACAGTCACAAAAACACTAAAAACTTTCACTATGTCTTTCAAAAATTCGCTCTCAAAGTGAGAAATCGGTATTTTCCTGAAATAGGTCAGCTTTTTTCAAACATCTTCATTATTTTTTCGATTTTCTATTAGCTTGACCATTTTTTCACAACAATGTGAACGAAATGACTAGATTTCTACAGAAAATATTGTAAAAAAGCATTGGCGACAAAAAACCAACAAAATAACAATAATTAGTGAGCAAAAGTGTTTTTAACTTTCCATAAGGAGTAATTTTGCTTTTTTTGTTTYTTATGAGCTTTTTTCCTTTTTTTTTTCGGGAATCTGATCGAAATTCAGTTCGAAACTGTTTTTGAACGAAAAAACTAAATTTGAATGTCGCGCGAGATTTTGTTCAACGGGGCGCACTTTCTGACGATCGTTTGCAGCCGTCGATTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCTCTTCCTTCCCGTCCGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAACAGAAGGTCGCTGGTTCGATTCCAGCATGAGGCACCGAACTTCTTTTTTGTTTTTTATTTTATTTATAAGAGGTAGGGAAGACGATTTCGAGGAAATAATAAAATTTTGAGATCTCTGAAAAGAAGAAATTGAAAAATGCACCTGTCTTTGACTAATTTAGCATTTAATTCAGGAAGTGACTCTTCATTCATTCTTCTTTTCGTCAGAGTCTCAAAAATTACGTAGCCAAATTCTTGCTGAATGAATTTCTTAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTGAGAACGGGCTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGGTCAGATGACATACACAGG</pcr_primer_p2>
		<pcr_amplicon_size>684</pcr_amplicon_size>
		<canonical_amplicon>CTATTGAGAACGGGCTAAAATTTTAATGAGTTTGGTTTCAGCATGTTCGAGAGTACCTTTGTGCAAGTTTTGAGCAAATTCTCAACCGGTATCTGAAAAAAGTTCCCTTGTAAGGGGGTACCCCATGGCATTTTTTCAATAAACTTTTTTGAAAAGATAAGAATACTCTTCCAGATTGTTTAGCAACATTGGAAAATACAACTTACAGTCACAAAAACACTAAAAACTTTCACTATGTCTTTCAAAAATTCGCTCTCAAAGTGAGAAATCGGTATTTTCCTGAAATAGGTCAGCTTTTTTCAAACATCTTCATTATTTTTTCGATTTTCTATTAGCTTGACCATTTTTTCACAACAATGTGAACGAAATGACTAGATTTCTACAGAAAATATTGTAAAAAAGCATTGGCGACAAAAAACCAACAAAATAACAATAATTAGTGAGCAAAAGTGTTTTTAACTTTCCATAAGGAGTAATTTTGCTTTTTTTGTTTCTTATGAGCTTTTTTCCTTTTTTTTTTCGGGAATCTGATCGAAATTCAGTTCGAAACTGTTTTTGAACGAAAAAACTAAATTTGAATGTCGCGCGAGATTTTGTTCAACGGGGCGCACTTTCTGACGATCGTTTGCAGCCGTCGATTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCT</canonical_amplicon>
		<polymorphic_amplicon>CTATTGAGAACGGGCTAAAATTTTAATGAGTTTGGTTTCAGCATGTTCGAGAGTACCTTTGTGCAAGTTTTGAGCAAATTCTCAACCGGTATCTGAAAAAAGTTCCCTTGTAAGGGGGTACCCCATGGCATTTTTTCAATAAACTTTTTTGAAAAGATAAGAATACTCTTCCAGATTGTTTAGCAACATTGGAAAATACAACTTACAGTCACAAAAACACTAAAAACTTTCACTATGTCTTTCAAAAATTCGCTCTCAAAGTGAGAAATCGGTATTTTCCTGAAATAGGTCAGCTTTTTTCAAACATCTTCATTATTTTTTCGATTTTCTATTAGCTTGACCATTTTTTCACAACAATGTGAACGAAATGACTAGATTTCTACAGAAAATATTGTAAAAAAGCATTGGCGACAAAAAACCAACAAAATAACAATAATTAGTGAGCAAAAGTGTTTTTAACTTTCCATAAGGAGTAATTTTGCTTTTTTTGTTTYTTATGAGCTTTTTTCCTTTTTTTTTTCGGGAATCTGATCGAAATTCAGTTCGAAACTGTTTTTGAACGAAAAAACTAAATTTGAATGTCGCGCGAGATTTTGTTCAACGGGGCGCACTTTCTGACGATCGTTTGCAGCCGTCGATTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26588</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>21206</contig_pos>
        <strand></strand>
        <context>tccttttttt[T/A]ttcgggaatc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAGGAGTAATTTTGCTTTTTTTGTTTCTTATGAGCTTTTTTCCTTTTTTT</left_flank>
        <right_flank>TTCGGGAATCTGATCGAAATTCAGTTCGAAACTGTTTTTGAACGAAAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTAATGAGTTTGGTTTCAGCATGTTCGAGAGTACCTTTGTGCAAGTTTTGAGCAAATTCTCAACCGGTATCTGAAAAAAGTTCCCTTGTAAGGGGGTACCCCATGGCATTTTTTCAATAAACTTTTTTGAAAAGATAAGAATACTCTTCCAGATTGTTTAGCAACATTGGAAAATACAACTTACAGTCACAAAAACACTAAAAACTTTCACTATGTCTTTCAAAAATTCGCTCTCAAAGTGAGAAATCGGTATTTTCCTGAAATAGGTCAGCTTTTTTCAAACATCTTCATTATTTTTTCGATTTTCTATTAGCTTGACCATTTTTTCACAACAATGTGAACGAAATGACTAGATTTCTACAGAAAATATTGTAAAAAAGCATTGGCGACAAAAAACCAACAAAATAACAATAATTAGTGAGCAAAAGTGTTTTTAACTTTCCATAAGGAGTAATTTTGCTTTTTTTGTTTCTTATGAGCTTTTTTCCTTTTTTTTTTCGGGAATCTGATCGAAATTCAGTTCGAAACTGTTTTTGAACGAAAAAACTAAATTTGAATGTCGCGCGAGATTTTGTTCAACGGGGCGCACTTTCTGACGATCGTTTGCAGCCGTCGATTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCTCTTCCTTCCCGTCCGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAACAGAAGGTCGCTGGTTCGATTCCAGCATGAGGCACCGAACTTCTTTTTTGTTTTTTATTTTATTTATAAGAGGTAGGGAAGACGATTTCGAGGAAATAATAAAATTTTGAGATCTCTGAAAAGAAGAAATTGAAAAATGCACCTGTCTTTGACTAATTTAGCATTTAATTCAGGAAGTGACTCTTCATTCATTCTTCTTTTCGTCAGAGTCTCAAAAATTACGTAGCCAAATTCTTGCTGAATGAATTTCTTAATTTTCAGCTGTTCATAGTAAAACTTTGG</canonical>
            <polymorphic>AATTTTAATGAGTTTGGTTTCAGCATGTTCGAGAGTACCTTTGTGCAAGTTTTGAGCAAATTCTCAACCGGTATCTGAAAAAAGTTCCCTTGTAAGGGGGTACCCCATGGCATTTTTTCAATAAACTTTTTTGAAAAGATAAGAATACTCTTCCAGATTGTTTAGCAACATTGGAAAATACAACTTACAGTCACAAAAACACTAAAAACTTTCACTATGTCTTTCAAAAATTCGCTCTCAAAGTGAGAAATCGGTATTTTCCTGAAATAGGTCAGCTTTTTTCAAACATCTTCATTATTTTTTCGATTTTCTATTAGCTTGACCATTTTTTCACAACAATGTGAACGAAATGACTAGATTTCTACAGAAAATATTGTAAAAAAGCATTGGCGACAAAAAACCAACAAAATAACAATAATTAGTGAGCAAAAGTGTTTTTAACTTTCCATAAGGAGTAATTTTGCTTTTTTTGTTTCTTATGAGCTTTTTTCCTTTTTTTWTTCGGGAATCTGATCGAAATTCAGTTCGAAACTGTTTTTGAACGAAAAAACTAAATTTGAATGTCGCGCGAGATTTTGTTCAACGGGGCGCACTTTCTGACGATCGTTTGCAGCCGTCGATTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCTCTTCCTTCCCGTCCGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAACAGAAGGTCGCTGGTTCGATTCCAGCATGAGGCACCGAACTTCTTTTTTGTTTTTTATTTTATTTATAAGAGGTAGGGAAGACGATTTCGAGGAAATAATAAAATTTTGAGATCTCTGAAAAGAAGAAATTGAAAAATGCACCTGTCTTTGACTAATTTAGCATTTAATTCAGGAAGTGACTCTTCATTCATTCTTCTTTTCGTCAGAGTCTCAAAAATTACGTAGCCAAATTCTTGCTGAATGAATTTCTTAATTTTCAGCTGTTCATAGTAAAACTTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTGAGAACGGGCTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGGTCAGATGACATACACAGG</pcr_primer_p2>
		<pcr_amplicon_size>684</pcr_amplicon_size>
		<canonical_amplicon>TTTTCGGGAATCTGATCGAAATTCAGTTCGAAACTGTTTTTGAACGAAAAAACTAAATTTGAATGTCGCGCGAGATTTTGTTCAACGGGGCGCACTTTCTGACGATCGTTTGCAGCCGTCGATTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCT</canonical_amplicon>
		<polymorphic_amplicon>TWTTCGGGAATCTGATCGAAATTCAGTTCGAAACTGTTTTTGAACGAAAAAACTAAATTTGAATGTCGCGCGAGATTTTGTTCAACGGGGCGCACTTTCTGACGATCGTTTGCAGCCGTCGATTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26589</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>21249</contig_pos>
        <strand></strand>
        <context>tgtttttgaa[C/A]gaaaaaacta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTTTTTTTTCGGGAATCTGATCGAAATTCAGTTCGAAACTGTTTTTGAA</left_flank>
        <right_flank>GAAAAAACTAAATTTGAATGTCGCGCGAGATTTTGTTCAACGGGGCGCAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCAAGTTTTGAGCAAATTCTCAACCGGTATCTGAAAAAAGTTCCCTTGTAAGGGGGTACCCCATGGCATTTTTTCAATAAACTTTTTTGAAAAGATAAGAATACTCTTCCAGATTGTTTAGCAACATTGGAAAATACAACTTACAGTCACAAAAACACTAAAAACTTTCACTATGTCTTTCAAAAATTCGCTCTCAAAGTGAGAAATCGGTATTTTCCTGAAATAGGTCAGCTTTTTTCAAACATCTTCATTATTTTTTCGATTTTCTATTAGCTTGACCATTTTTTCACAACAATGTGAACGAAATGACTAGATTTCTACAGAAAATATTGTAAAAAAGCATTGGCGACAAAAAACCAACAAAATAACAATAATTAGTGAGCAAAAGTGTTTTTAACTTTCCATAAGGAGTAATTTTGCTTTTTTTGTTTCTTATGAGCTTTTTTCCTTTTTTTTTTCGGGAATCTGATCGAAATTCAGTTCGAAACTGTTTTTGAACGAAAAAACTAAATTTGAATGTCGCGCGAGATTTTGTTCAACGGGGCGCACTTTCTGACGATCGTTTGCAGCCGTCGATTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCTCTTCCTTCCCGTCCGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAACAGAAGGTCGCTGGTTCGATTCCAGCATGAGGCACCGAACTTCTTTTTTGTTTTTTATTTTATTTATAAGAGGTAGGGAAGACGATTTCGAGGAAATAATAAAATTTTGAGATCTCTGAAAAGAAGAAATTGAAAAATGCACCTGTCTTTGACTAATTTAGCATTTAATTCAGGAAGTGACTCTTCATTCATTCTTCTTTTCGTCAGAGTCTCAAAAATTACGTAGCCAAATTCTTGCTGAATGAATTTCTTAATTTTCAGCTGTTCATAGTAAAACTTTGGAGTATAAAATGGAAAGTGGGACTCTAGAATTTTTCATCAAACC</canonical>
            <polymorphic>TGCAAGTTTTGAGCAAATTCTCAACCGGTATCTGAAAAAAGTTCCCTTGTAAGGGGGTACCCCATGGCATTTTTTCAATAAACTTTTTTGAAAAGATAAGAATACTCTTCCAGATTGTTTAGCAACATTGGAAAATACAACTTACAGTCACAAAAACACTAAAAACTTTCACTATGTCTTTCAAAAATTCGCTCTCAAAGTGAGAAATCGGTATTTTCCTGAAATAGGTCAGCTTTTTTCAAACATCTTCATTATTTTTTCGATTTTCTATTAGCTTGACCATTTTTTCACAACAATGTGAACGAAATGACTAGATTTCTACAGAAAATATTGTAAAAAAGCATTGGCGACAAAAAACCAACAAAATAACAATAATTAGTGAGCAAAAGTGTTTTTAACTTTCCATAAGGAGTAATTTTGCTTTTTTTGTTTCTTATGAGCTTTTTTCCTTTTTTTTTTCGGGAATCTGATCGAAATTCAGTTCGAAACTGTTTTTGAAMGAAAAAACTAAATTTGAATGTCGCGCGAGATTTTGTTCAACGGGGCGCACTTTCTGACGATCGTTTGCAGCCGTCGATTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCTCTTCCTTCCCGTCCGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAACAGAAGGTCGCTGGTTCGATTCCAGCATGAGGCACCGAACTTCTTTTTTGTTTTTTATTTTATTTATAAGAGGTAGGGAAGACGATTTCGAGGAAATAATAAAATTTTGAGATCTCTGAAAAGAAGAAATTGAAAAATGCACCTGTCTTTGACTAATTTAGCATTTAATTCAGGAAGTGACTCTTCATTCATTCTTCTTTTCGTCAGAGTCTCAAAAATTACGTAGCCAAATTCTTGCTGAATGAATTTCTTAATTTTCAGCTGTTCATAGTAAAACTTTGGAGTATAAAATGGAAAGTGGGACTCTAGAATTTTTCATCAAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTGAGAACGGGCTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGGTCAGATGACATACACAGG</pcr_primer_p2>
		<pcr_amplicon_size>684</pcr_amplicon_size>
		<canonical_amplicon>ACGAAAAAACTAAATTTGAATGTCGCGCGAGATTTTGTTCAACGGGGCGCACTTTCTGACGATCGTTTGCAGCCGTCGATTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCT</canonical_amplicon>
		<polymorphic_amplicon>AMGAAAAAACTAAATTTGAATGTCGCGCGAGATTTTGTTCAACGGGGCGCACTTTCTGACGATCGTTTGCAGCCGTCGATTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26590</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>21291</contig_pos>
        <strand></strand>
        <context>tttgttcaac[G/C]gggcgcactt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TTTTTGAACGAAAAAACTAAATTTGAATGTCGCGCGAGATTTTGTTCAAC</left_flank>
        <right_flank>GGGCGCACTTTCTGACGATCGTTTGCAGCCGTCGATTTTCGTCAGCGTCG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCCTTGTAAGGGGGTACCCCATGGCATTTTTTCAATAAACTTTTTTGAAAAGATAAGAATACTCTTCCAGATTGTTTAGCAACATTGGAAAATACAACTTACAGTCACAAAAACACTAAAAACTTTCACTATGTCTTTCAAAAATTCGCTCTCAAAGTGAGAAATCGGTATTTTCCTGAAATAGGTCAGCTTTTTTCAAACATCTTCATTATTTTTTCGATTTTCTATTAGCTTGACCATTTTTTCACAACAATGTGAACGAAATGACTAGATTTCTACAGAAAATATTGTAAAAAAGCATTGGCGACAAAAAACCAACAAAATAACAATAATTAGTGAGCAAAAGTGTTTTTAACTTTCCATAAGGAGTAATTTTGCTTTTTTTGTTTCTTATGAGCTTTTTTCCTTTTTTTTTTCGGGAATCTGATCGAAATTCAGTTCGAAACTGTTTTTGAACGAAAAAACTAAATTTGAATGTCGCGCGAGATTTTGTTCAACGGGGCGCACTTTCTGACGATCGTTTGCAGCCGTCGATTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCTCTTCCTTCCCGTCCGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAACAGAAGGTCGCTGGTTCGATTCCAGCATGAGGCACCGAACTTCTTTTTTGTTTTTTATTTTATTTATAAGAGGTAGGGAAGACGATTTCGAGGAAATAATAAAATTTTGAGATCTCTGAAAAGAAGAAATTGAAAAATGCACCTGTCTTTGACTAATTTAGCATTTAATTCAGGAAGTGACTCTTCATTCATTCTTCTTTTCGTCAGAGTCTCAAAAATTACGTAGCCAAATTCTTGCTGAATGAATTTCTTAATTTTCAGCTGTTCATAGTAAAACTTTGGAGTATAAAATGGAAAGTGGGACTCTAGAATTTTTCATCAAACCCACAAAACTCCGCAATGTTCCATATTCCCACATATTCTGATA</canonical>
            <polymorphic>TCCCTTGTAAGGGGGTACCCCATGGCATTTTTTCAATAAACTTTTTTGAAAAGATAAGAATACTCTTCCAGATTGTTTAGCAACATTGGAAAATACAACTTACAGTCACAAAAACACTAAAAACTTTCACTATGTCTTTCAAAAATTCGCTCTCAAAGTGAGAAATCGGTATTTTCCTGAAATAGGTCAGCTTTTTTCAAACATCTTCATTATTTTTTCGATTTTCTATTAGCTTGACCATTTTTTCACAACAATGTGAACGAAATGACTAGATTTCTACAGAAAATATTGTAAAAAAGCATTGGCGACAAAAAACCAACAAAATAACAATAATTAGTGAGCAAAAGTGTTTTTAACTTTCCATAAGGAGTAATTTTGCTTTTTTTGTTTCTTATGAGCTTTTTTCCTTTTTTTTTTCGGGAATCTGATCGAAATTCAGTTCGAAACTGTTTTTGAACGAAAAAACTAAATTTGAATGTCGCGCGAGATTTTGTTCAACSGGGCGCACTTTCTGACGATCGTTTGCAGCCGTCGATTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCTCTTCCTTCCCGTCCGCCTCATTGGCTCAGTGGCAGAGCGTCTGTCTAGTAAACAGAAGGTCGCTGGTTCGATTCCAGCATGAGGCACCGAACTTCTTTTTTGTTTTTTATTTTATTTATAAGAGGTAGGGAAGACGATTTCGAGGAAATAATAAAATTTTGAGATCTCTGAAAAGAAGAAATTGAAAAATGCACCTGTCTTTGACTAATTTAGCATTTAATTCAGGAAGTGACTCTTCATTCATTCTTCTTTTCGTCAGAGTCTCAAAAATTACGTAGCCAAATTCTTGCTGAATGAATTTCTTAATTTTCAGCTGTTCATAGTAAAACTTTGGAGTATAAAATGGAAAGTGGGACTCTAGAATTTTTCATCAAACCCACAAAACTCCGCAATGTTCCATATTCCCACATATTCTGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTGAGAACGGGCTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGGTCAGATGACATACACAGG</pcr_primer_p2>
		<pcr_amplicon_size>684</pcr_amplicon_size>
		<canonical_amplicon>CGGGGCGCACTTTCTGACGATCGTTTGCAGCCGTCGATTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCT</canonical_amplicon>
		<polymorphic_amplicon>CSGGGCGCACTTTCTGACGATCGTTTGCAGCCGTCGATTTTCGTCAGCGTCGCGCGCGCCCGCCTGTGTATGTCATCTGACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26591</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>22579</contig_pos>
        <strand>+</strand>
        <context>GCCAGTAGCA[C/G]CCGAACTACC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAAAATAATTGCATTTACAGTCGAATGAAGGGCAAAAATTGCCAGTAGCA</left_flank>
        <right_flank>CCGAACTACCGCTGAGAAAATAAACCATTTTCAAATACCAAAAAAACCTG</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTCTCGAATGAATATTCTGAAAATTAATTTTGAGATTCTGAGATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGACTTTTTAACTTTTATTTGCCTAGCGTTCTAATTTGTTACCTTTTAATATAACCTCTGTATGTCGGAGTACTGATAATTAAAATAATTGCATTTACAGTCGAATGAAGGGCAAAAATTGCCAGTAGCAGCCGAACTACCGCTGAGAAAATAAACCATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCTCATTTATATTGGTTCCCGTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAGAAATTGAGATAATTGAGCTCAACACTGACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATCAAAAACTCACCCTGTGAATGTTCATAATGACTGATAATTGCTATCACTAATCCAACAGGAGGCAGCAGACACATTGATGACGTGGCAAGCTGAGCAATCAGACTAATCACAGCCGCTTGGTGTCTTTGGAAATTTTTAGCAGAGATTTTCTTCTTGACGCCGGATAATAATGTAAAAATATCAATGATAAGGAAAGAGAAAAATAATGAAAATAAAGTAACTGCGAAGA</canonical>
            <polymorphic>TTTTTCTCGAATGAATATTCTGAAAATTAATTTTGAGATTCTGAGATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGACTTTTTAACTTTTATTTGCCTAGCGTTCTAATTTGTTACCTTTTAATATAACCTCTGTATGTCGGAGTACTGATAATTAAAATAATTGCATTTACAGTCGAATGAAGGGCAAAAATTGCCAGTAGCASCCGAACTACCGCTGAGAAAATAAACCATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCTCATTTATATTGGTTCCCGTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAGAAATTGAGATAATTGAGCTCAACACTGACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATCAAAAACTCACCCTGTGAATGTTCATAATGACTGATAATTGCTATCACTAATCCAACAGGAGGCAGCAGACACATTGATGACGTGGCAAGCTGAGCAATCAGACTAATCACAGCCGCTTGGTGTCTTTGGAAATTTTTAGCAGAGATTTTCTTCTTGACGCCGGATAATAATGTAAAAATATCAATGATAAGGAAAGAGAAAAATAATGAAAATAAAGTAACTGCGAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 336 114 50</canonical_bands>
                <polymorphic_bands>836 114 50</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>500 149 131 117 61 23 19</canonical_bands>
                <polymorphic_bands>561 149 131 117 23 19</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>497 336 167</canonical_bands>
                <polymorphic_bands>833 167</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGTATGTCGGAGTACTGATAAT</pcr_primer_p1>
		<pcr_primer_p2>ACAGGGTGAGTTTTTGATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>361</pcr_amplicon_size>
		<canonical_amplicon>TCTGTATGTCGGAGTACTGATAATTAAAATAATTGCATTTACAGTCGAATGAAGGGCAAAAATTGCCAGTAGCAGCCGAACTACCGCTGAGAAAATAAACCATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCTCATTTATATTGGTTCCCGTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAGAAATTGAGATAATTGAGCTCAACACTGACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATCAAAAACTCACCCTGT</canonical_amplicon>
		<polymorphic_amplicon>TCTGTATGTCGGAGTACTGATAATTAAAATAATTGCATTTACAGTCGAATGAAGGGCAAAAATTGCCAGTAGCASCCGAACTACCGCTGAGAAAATAAACCATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCTCATTTATATTGGTTCCCGTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAGAAATTGAGATAATTGAGCTCAACACTGACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATCAAAAACTCACCCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26592</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>22662</contig_pos>
        <strand></strand>
        <context>atattgagct[C/T]atttatattg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCT</left_flank>
        <right_flank>ATTTATATTGGTTCCCGTCAGAAATATGAAAAAGTTGTCAACTGATAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATTCTGAGATTCTGAGATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGACTTTTTAACTTTTATTTGCCTAGCGTTCTAATTTGTTACCTTTTAATATAACCTCTGTATGTCGGAGTACTGATAATTAAAATAATTGCATTTACAGTCGAATGAAGGGCAAAAATTGCCAGTAGCAGCCGAACTACCGCTGAGAAAATAAACCATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCTCATTTATATTGGTTCCCGTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAGAAATTGAGATAATTGAGCTCAACACTGACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATCAAAAACTCACCCTGTGAATGTTCATAATGACTGATAATTGCTATCACTAATCCAACAGGAGGCAGCAGACACATTGATGACGTGGCAAGCTGAGCAATCAGACTAATCACAGCCGCTTGGTGTCTTTGGAAATTTTTAGCAGAGATTTTCTTCTTGACGCCGGATAATAATGTAAAAATATCAATGATAAGGAAAGAGAAAAATAATGAAAATAAAGTAACTGCGAAGAAGCAACCAACTGCGATGAGTTTGAAGATAAAGTTGAATTCGTAAATTGCGAAATTGAAGAGTTGCGAAAATTCAGTGTAGTAG</canonical>
            <polymorphic>AGATTCTGAGATTCTGAGATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGACTTTTTAACTTTTATTTGCCTAGCGTTCTAATTTGTTACCTTTTAATATAACCTCTGTATGTCGGAGTACTGATAATTAAAATAATTGCATTTACAGTCGAATGAAGGGCAAAAATTGCCAGTAGCAGCCGAACTACCGCTGAGAAAATAAACCATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCTYATTTATATTGGTTCCCGTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAGAAATTGAGATAATTGAGCTCAACACTGACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATCAAAAACTCACCCTGTGAATGTTCATAATGACTGATAATTGCTATCACTAATCCAACAGGAGGCAGCAGACACATTGATGACGTGGCAAGCTGAGCAATCAGACTAATCACAGCCGCTTGGTGTCTTTGGAAATTTTTAGCAGAGATTTTCTTCTTGACGCCGGATAATAATGTAAAAATATCAATGATAAGGAAAGAGAAAAATAATGAAAATAAAGTAACTGCGAAGAAGCAACCAACTGCGATGAGTTTGAAGATAAAGTTGAATTCGTAAATTGCGAAATTGAAGAGTTGCGAAAATTCAGTGTAGTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>499 370 131</canonical_bands>
                <polymorphic_bands>630 370</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>480 370 131 19</canonical_bands>
                <polymorphic_bands>480 370 150</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>480 370 131 19</canonical_bands>
                <polymorphic_bands>480 370 150</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>497 372 131</canonical_bands>
                <polymorphic_bands>628 372</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTACCGCTGAGAAAATAAAC</pcr_primer_p1>
		<pcr_primer_p2>CACAGGGTGAGTTTTTGATT</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>AACTACCGCTGAGAAAATAAACCATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCTCATTTATATTGGTTCCCGTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAGAAATTGAGATAATTGAGCTCAACACTGACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATCAAAAACTCACCCTGTG</canonical_amplicon>
		<polymorphic_amplicon>AACTACCGCTGAGAAAATAAACCATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCTYATTTATATTGGTTCCCGTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAGAAATTGAGATAATTGAGCTCAACACTGACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATCAAAAACTCACCCTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26593</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>22678</contig_pos>
        <strand></strand>
        <context>tattggttcc[C/T]gtcagaaata</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTATTAGAAGGGCCCCCTAATCAATATTGAGCTCATTTATATTGGTTCC</left_flank>
        <right_flank>GTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGACTTTTTAACTTTTATTTGCCTAGCGTTCTAATTTGTTACCTTTTAATATAACCTCTGTATGTCGGAGTACTGATAATTAAAATAATTGCATTTACAGTCGAATGAAGGGCAAAAATTGCCAGTAGCAGCCGAACTACCGCTGAGAAAATAAACCATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCTCATTTATATTGGTTCCCGTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAGAAATTGAGATAATTGAGCTCAACACTGACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATCAAAAACTCACCCTGTGAATGTTCATAATGACTGATAATTGCTATCACTAATCCAACAGGAGGCAGCAGACACATTGATGACGTGGCAAGCTGAGCAATCAGACTAATCACAGCCGCTTGGTGTCTTTGGAAATTTTTAGCAGAGATTTTCTTCTTGACGCCGGATAATAATGTAAAAATATCAATGATAAGGAAAGAGAAAAATAATGAAAATAAAGTAACTGCGAAGAAGCAACCAACTGCGATGAGTTTGAAGATAAAGTTGAATTCGTAAATTGCGAAATTGAAGAGTTGCGAAAATTCAGTGTAGTAGTTGGGGTAGTTCTGAA</canonical>
            <polymorphic>AGATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGACTTTTTAACTTTTATTTGCCTAGCGTTCTAATTTGTTACCTTTTAATATAACCTCTGTATGTCGGAGTACTGATAATTAAAATAATTGCATTTACAGTCGAATGAAGGGCAAAAATTGCCAGTAGCAGCCGAACTACCGCTGAGAAAATAAACCATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCTCATTTATATTGGTTCCYGTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAGAAATTGAGATAATTGAGCTCAACACTGACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATCAAAAACTCACCCTGTGAATGTTCATAATGACTGATAATTGCTATCACTAATCCAACAGGAGGCAGCAGACACATTGATGACGTGGCAAGCTGAGCAATCAGACTAATCACAGCCGCTTGGTGTCTTTGGAAATTTTTAGCAGAGATTTTCTTCTTGACGCCGGATAATAATGTAAAAATATCAATGATAAGGAAAGAGAAAAATAATGAAAATAAAGTAACTGCGAAGAAGCAACCAACTGCGATGAGTTTGAAGATAAAGTTGAATTCGTAAATTGCGAAATTGAAGAGTTGCGAAAATTCAGTGTAGTAGTTGGGGTAGTTCTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTACCGCTGAGAAAATAAAC</pcr_primer_p1>
		<pcr_primer_p2>CACAGGGTGAGTTTTTGATT</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>AACTACCGCTGAGAAAATAAACCATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCTCATTTATATTGGTTCCCGTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAGAAATTGAGATAATTGAGCTCAACACTGACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATCAAAAACTCACCCTGTG</canonical_amplicon>
		<polymorphic_amplicon>AACTACCGCTGAGAAAATAAACCATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCTCATTTATATTGGTTCCYGTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAGAAATTGAGATAATTGAGCTCAACACTGACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATCAAAAACTCACCCTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26594</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>22774</contig_pos>
        <strand></strand>
        <context>tcttacatag[A/G]aattgagata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAG</left_flank>
        <right_flank>AATTGAGATAATTGAGCTCAACACTGACAGAGTATGCCATTCTATTACAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGACTTTTTAACTTTTATTTGCCTAGCGTTCTAATTTGTTACCTTTTAATATAACCTCTGTATGTCGGAGTACTGATAATTAAAATAATTGCATTTACAGTCGAATGAAGGGCAAAAATTGCCAGTAGCAGCCGAACTACCGCTGAGAAAATAAACCATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCTCATTTATATTGGTTCCCGTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAGAAATTGAGATAATTGAGCTCAACACTGACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATCAAAAACTCACCCTGTGAATGTTCATAATGACTGATAATTGCTATCACTAATCCAACAGGAGGCAGCAGACACATTGATGACGTGGCAAGCTGAGCAATCAGACTAATCACAGCCGCTTGGTGTCTTTGGAAATTTTTAGCAGAGATTTTCTTCTTGACGCCGGATAATAATGTAAAAATATCAATGATAAGGAAAGAGAAAAATAATGAAAATAAAGTAACTGCGAAGAAGCAACCAACTGCGATGAGTTTGAAGATAAAGTTGAATTCGTAAATTGCGAAATTGAAGAGTTGCGAAAATTCAGTGTAGTAGTTGGGGTAGTTCTGAAAATTTTTAATTTGAAAATGCAAGGTTTTGTTATTTTCAAAATTTCAGAATCTCAGAATCTCCGAGGATCAGCATCTCAGAATTGCAGATCCTACCA</canonical>
            <polymorphic>AGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGACTTTTTAACTTTTATTTGCCTAGCGTTCTAATTTGTTACCTTTTAATATAACCTCTGTATGTCGGAGTACTGATAATTAAAATAATTGCATTTACAGTCGAATGAAGGGCAAAAATTGCCAGTAGCAGCCGAACTACCGCTGAGAAAATAAACCATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCTCATTTATATTGGTTCCCGTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAGRAATTGAGATAATTGAGCTCAACACTGACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATCAAAAACTCACCCTGTGAATGTTCATAATGACTGATAATTGCTATCACTAATCCAACAGGAGGCAGCAGACACATTGATGACGTGGCAAGCTGAGCAATCAGACTAATCACAGCCGCTTGGTGTCTTTGGAAATTTTTAGCAGAGATTTTCTTCTTGACGCCGGATAATAATGTAAAAATATCAATGATAAGGAAAGAGAAAAATAATGAAAATAAAGTAACTGCGAAGAAGCAACCAACTGCGATGAGTTTGAAGATAAAGTTGAATTCGTAAATTGCGAAATTGAAGAGTTGCGAAAATTCAGTGTAGTAGTTGGGGTAGTTCTGAAAATTTTTAATTTGAAAATGCAAGGTTTTGTTATTTTCAAAATTTCAGAATCTCAGAATCTCCGAGGATCAGCATCTCAGAATTGCAGATCCTACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTACCGCTGAGAAAATAAAC</pcr_primer_p1>
		<pcr_primer_p2>CACAGGGTGAGTTTTTGATT</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>AACTACCGCTGAGAAAATAAACCATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCTCATTTATATTGGTTCCCGTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAGAAATTGAGATAATTGAGCTCAACACTGACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATCAAAAACTCACCCTGTG</canonical_amplicon>
		<polymorphic_amplicon>AACTACCGCTGAGAAAATAAACCATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCTCATTTATATTGGTTCCCGTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAGRAATTGAGATAATTGAGCTCAACACTGACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATCAAAAACTCACCCTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26595</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>22788</contig_pos>
        <strand></strand>
        <context>tgagataatt[G/A]agctcaacmc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTTTCAATTGACACATTTTTGATATCTTACATAGAAATTGAGATAATT</left_flank>
        <right_flank>AGCTCAACACTGACAGAGTATGCCATTCTATTACAGTTTTACAATTTCAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGACTTTTTAACTTTTATTTGCCTAGCGTTCTAATTTGTTACCTTTTAATATAACCTCTGTATGTCGGAGTACTGATAATTAAAATAATTGCATTTACAGTCGAATGAAGGGCAAAAATTGCCAGTAGCAGCCGAACTACCGCTGAGAAAATAAACCATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCTCATTTATATTGGTTCCCGTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAGAAATTGAGATAATTGAGCTCAACACTGACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATCAAAAACTCACCCTGTGAATGTTCATAATGACTGATAATTGCTATCACTAATCCAACAGGAGGCAGCAGACACATTGATGACGTGGCAAGCTGAGCAATCAGACTAATCACAGCCGCTTGGTGTCTTTGGAAATTTTTAGCAGAGATTTTCTTCTTGACGCCGGATAATAATGTAAAAATATCAATGATAAGGAAAGAGAAAAATAATGAAAATAAAGTAACTGCGAAGAAGCAACCAACTGCGATGAGTTTGAAGATAAAGTTGAATTCGTAAATTGCGAAATTGAAGAGTTGCGAAAATTCAGTGTAGTAGTTGGGGTAGTTCTGAAAATTTTTAATTTGAAAATGCAAGGTTTTGTTATTTTCAAAATTTCAGAATCTCAGAATCTCCGAGGATCAGCATCTCAGAATTGCAGATCCTACCATTTTCACAAAATCC</canonical>
            <polymorphic>TGAGATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGACTTTTTAACTTTTATTTGCCTAGCGTTCTAATTTGTTACCTTTTAATATAACCTCTGTATGTCGGAGTACTGATAATTAAAATAATTGCATTTACAGTCGAATGAAGGGCAAAAATTGCCAGTAGCAGCCGAACTACCGCTGAGAAAATAAACCATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCTCATTTATATTGGTTCCCGTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAGAAATTGAGATAATTRAGCTCAACACTGACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATCAAAAACTCACCCTGTGAATGTTCATAATGACTGATAATTGCTATCACTAATCCAACAGGAGGCAGCAGACACATTGATGACGTGGCAAGCTGAGCAATCAGACTAATCACAGCCGCTTGGTGTCTTTGGAAATTTTTAGCAGAGATTTTCTTCTTGACGCCGGATAATAATGTAAAAATATCAATGATAAGGAAAGAGAAAAATAATGAAAATAAAGTAACTGCGAAGAAGCAACCAACTGCGATGAGTTTGAAGATAAAGTTGAATTCGTAAATTGCGAAATTGAAGAGTTGCGAAAATTCAGTGTAGTAGTTGGGGTAGTTCTGAAAATTTTTAATTTGAAAATGCAAGGTTTTGTTATTTTCAAAATTTCAGAATCTCAGAATCTCCGAGGATCAGCATCTCAGAATTGCAGATCCTACCATTTTCACAAAATCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>496 373 131</canonical_bands>
                <polymorphic_bands>627 373</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>496 354 131 19</canonical_bands>
                <polymorphic_bands>627 354 19</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>496 354 131 19</canonical_bands>
                <polymorphic_bands>627 354 19</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>498 371 131</canonical_bands>
                <polymorphic_bands>629 371</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTACCGCTGAGAAAATAAAC</pcr_primer_p1>
		<pcr_primer_p2>CACAGGGTGAGTTTTTGATT</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>AACTACCGCTGAGAAAATAAACCATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCTCATTTATATTGGTTCCCGTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAGAAATTGAGATAATTGAGCTCAACACTGACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATCAAAAACTCACCCTGTG</canonical_amplicon>
		<polymorphic_amplicon>AACTACCGCTGAGAAAATAAACCATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCTCATTTATATTGGTTCCCGTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAGAAATTGAGATAATTRAGCTCAACACTGACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATCAAAAACTCACCCTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26596</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>22797</contig_pos>
        <strand></strand>
        <context>tragctcaac[A/C]ctracagagt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGACACATTTTTGATATCTTACATAGAAATTGAGATAATTGAGCTCAAC</left_flank>
        <right_flank>CTGACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGACTTTTTAACTTTTATTTGCCTAGCGTTCTAATTTGTTACCTTTTAATATAACCTCTGTATGTCGGAGTACTGATAATTAAAATAATTGCATTTACAGTCGAATGAAGGGCAAAAATTGCCAGTAGCAGCCGAACTACCGCTGAGAAAATAAACCATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCTCATTTATATTGGTTCCCGTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAGAAATTGAGATAATTGAGCTCAACACTGACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATCAAAAACTCACCCTGTGAATGTTCATAATGACTGATAATTGCTATCACTAATCCAACAGGAGGCAGCAGACACATTGATGACGTGGCAAGCTGAGCAATCAGACTAATCACAGCCGCTTGGTGTCTTTGGAAATTTTTAGCAGAGATTTTCTTCTTGACGCCGGATAATAATGTAAAAATATCAATGATAAGGAAAGAGAAAAATAATGAAAATAAAGTAACTGCGAAGAAGCAACCAACTGCGATGAGTTTGAAGATAAAGTTGAATTCGTAAATTGCGAAATTGAAGAGTTGCGAAAATTCAGTGTAGTAGTTGGGGTAGTTCTGAAAATTTTTAATTTGAAAATGCAAGGTTTTGTTATTTTCAAAATTTCAGAATCTCAGAATCTCCGAGGATCAGCATCTCAGAATTGCAGATCCTACCATTTTCACAAAATCCATCTGTTGA</canonical>
            <polymorphic>GAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGACTTTTTAACTTTTATTTGCCTAGCGTTCTAATTTGTTACCTTTTAATATAACCTCTGTATGTCGGAGTACTGATAATTAAAATAATTGCATTTACAGTCGAATGAAGGGCAAAAATTGCCAGTAGCAGCCGAACTACCGCTGAGAAAATAAACCATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCTCATTTATATTGGTTCCCGTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAGAAATTGAGATAATTGAGCTCAACMCTGACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATCAAAAACTCACCCTGTGAATGTTCATAATGACTGATAATTGCTATCACTAATCCAACAGGAGGCAGCAGACACATTGATGACGTGGCAAGCTGAGCAATCAGACTAATCACAGCCGCTTGGTGTCTTTGGAAATTTTTAGCAGAGATTTTCTTCTTGACGCCGGATAATAATGTAAAAATATCAATGATAAGGAAAGAGAAAAATAATGAAAATAAAGTAACTGCGAAGAAGCAACCAACTGCGATGAGTTTGAAGATAAAGTTGAATTCGTAAATTGCGAAATTGAAGAGTTGCGAAAATTCAGTGTAGTAGTTGGGGTAGTTCTGAAAATTTTTAATTTGAAAATGCAAGGTTTTGTTATTTTCAAAATTTCAGAATCTCAGAATCTCCGAGGATCAGCATCTCAGAATTGCAGATCCTACCATTTTCACAAAATCCATCTGTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>455 184 124 62 45 30 25 25 17 13 13 7</canonical_bands>
                <polymorphic_bands>455 184 124 107 30 25 25 17 13 13 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTACCGCTGAGAAAATAAAC</pcr_primer_p1>
		<pcr_primer_p2>CACAGGGTGAGTTTTTGATT</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>AACTACCGCTGAGAAAATAAACCATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCTCATTTATATTGGTTCCCGTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAGAAATTGAGATAATTGAGCTCAACACTGACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATCAAAAACTCACCCTGTG</canonical_amplicon>
		<polymorphic_amplicon>AACTACCGCTGAGAAAATAAACCATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCTCATTTATATTGGTTCCCGTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAGAAATTGAGATAATTGAGCTCAACMCTGACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATCAAAAACTCACCCTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26597</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>22800</contig_pos>
        <strand></strand>
        <context>gctcaacmct[G/A]acagagtatg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACACATTTTTGATATCTTACATAGAAATTGAGATAATTGAGCTCAACACT</left_flank>
        <right_flank>ACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGACTTTTTAACTTTTATTTGCCTAGCGTTCTAATTTGTTACCTTTTAATATAACCTCTGTATGTCGGAGTACTGATAATTAAAATAATTGCATTTACAGTCGAATGAAGGGCAAAAATTGCCAGTAGCAGCCGAACTACCGCTGAGAAAATAAACCATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCTCATTTATATTGGTTCCCGTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAGAAATTGAGATAATTGAGCTCAACACTGACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATCAAAAACTCACCCTGTGAATGTTCATAATGACTGATAATTGCTATCACTAATCCAACAGGAGGCAGCAGACACATTGATGACGTGGCAAGCTGAGCAATCAGACTAATCACAGCCGCTTGGTGTCTTTGGAAATTTTTAGCAGAGATTTTCTTCTTGACGCCGGATAATAATGTAAAAATATCAATGATAAGGAAAGAGAAAAATAATGAAAATAAAGTAACTGCGAAGAAGCAACCAACTGCGATGAGTTTGAAGATAAAGTTGAATTCGTAAATTGCGAAATTGAAGAGTTGCGAAAATTCAGTGTAGTAGTTGGGGTAGTTCTGAAAATTTTTAATTTGAAAATGCAAGGTTTTGTTATTTTCAAAATTTCAGAATCTCAGAATCTCCGAGGATCAGCATCTCAGAATTGCAGATCCTACCATTTTCACAAAATCCATCTGTTGATCC</canonical>
            <polymorphic>ATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGACTTTTTAACTTTTATTTGCCTAGCGTTCTAATTTGTTACCTTTTAATATAACCTCTGTATGTCGGAGTACTGATAATTAAAATAATTGCATTTACAGTCGAATGAAGGGCAAAAATTGCCAGTAGCAGCCGAACTACCGCTGAGAAAATAAACCATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCTCATTTATATTGGTTCCCGTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAGAAATTGAGATAATTGAGCTCAACACTRACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATCAAAAACTCACCCTGTGAATGTTCATAATGACTGATAATTGCTATCACTAATCCAACAGGAGGCAGCAGACACATTGATGACGTGGCAAGCTGAGCAATCAGACTAATCACAGCCGCTTGGTGTCTTTGGAAATTTTTAGCAGAGATTTTCTTCTTGACGCCGGATAATAATGTAAAAATATCAATGATAAGGAAAGAGAAAAATAATGAAAATAAAGTAACTGCGAAGAAGCAACCAACTGCGATGAGTTTGAAGATAAAGTTGAATTCGTAAATTGCGAAATTGAAGAGTTGCGAAAATTCAGTGTAGTAGTTGGGGTAGTTCTGAAAATTTTTAATTTGAAAATGCAAGGTTTTGTTATTTTCAAAATTTCAGAATCTCAGAATCTCCGAGGATCAGCATCTCAGAATTGCAGATCCTACCATTTTCACAAAATCCATCTGTTGATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTACCGCTGAGAAAATAAAC</pcr_primer_p1>
		<pcr_primer_p2>CACAGGGTGAGTTTTTGATT</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>AACTACCGCTGAGAAAATAAACCATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCTCATTTATATTGGTTCCCGTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAGAAATTGAGATAATTGAGCTCAACACTGACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATCAAAAACTCACCCTGTG</canonical_amplicon>
		<polymorphic_amplicon>AACTACCGCTGAGAAAATAAACCATTTTCAAATACCAAAAAAACCTGTATTAGAAGGGCCCCCTAATCAATATTGAGCTCATTTATATTGGTTCCCGTCAGAAATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCCCAAACATTTTTTTTCAATTGACACATTTTTGATATCTTACATAGAAATTGAGATAATTGAGCTCAACACTRACAGAGTATGCCATTCTATTACAGTTTTACAATTTCATGTCTTTAAAATCAAAAACTCACCCTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26598</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>37630</contig_pos>
        <strand>+</strand>
        <context>TACAACACTC[A/T]ATACAGAACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAAAATGGCAACTTGAAAAAGTATATTTCATGAAACAACTACAACACTC</left_flank>
        <right_flank>ATACAGAACGTTCCGGTTGTCGAATTGCTACAGAAGTCTGCACAACATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTTGCCTCGCCGGATAACCCCAGCGAAGCGGATCCAAAAATTAAGATTAGTGTTCAACACATTCTTTCGAATGGTCGGAACTCCAGCGTACCTTGAGTAACTGGGTTAAAACCGACGACAACAGCGAGACGACGCCTCTTATATATTTCTATGTATCAATCGATGCCCGCGTCGGACACTAGAGAGCGCACGTTTGAATAGACGCAGACGCGCGAGGAGGTGTGAGTGAGAGAGGTAGGGGAGGAGGAGAGACGGCAGACAACGAAAGAAAGGGGGGAAAGTAGTGGAGTGGGAGAAAAGAGGGGAGGGGAGGAGATTGTTGGTTCGACTCCGCGCGTGGTAATTTTTTTAAGTTTTGCATTTTTCTTTTTGGTTTTTATGTGTGCAGATAGAGTACTGTAACTGTTGTATACATGTTTAGTTTGAAGTTTTTTGTTGTATTATGACTAGAAAATGGCAACTTGAAAAAGTATATTTCATGAAACAACTACAACACTCAATACAGAACGTTCCGGTTGTCGAATTGCTACAGAAGTCTGCACAACATTTGATGTTTTCGCGCCAATCATCACCACTTTATTCCTGAAAAAGCTGTAATTTTTTTTCTCTAAAATACCCGAACAGCTTCCTTACAATCTCAACTGTTTTAGAATAGAATTTCTATATGGCGGAAAAAATATGAGCAATGAAACCGTATTAGCAGATGAATGAGTTGCAAACCACAGTATACACAACTCGGTTGATAGTTGTGCTTGCTTTAATTCCAAAAATATAATAATAACTAAACAGCAAGGAGGTACGAAACAAAAAGATGACATGGCAAATCGAACCAAAAGACTTTGAATGGCATCTTTGTGTTTTTGATATCGAGATGCAGAGATTCTCAGTTTCAAAGCTACCATCATTCGGAGAATATCCAGAAGAAAAAAATAAATAAAGATGAAAGTATGAACCCTCCGAGAACTGTTACCAGTAGCAAGAATACGAACCACCATGTTT</canonical>
            <polymorphic>CGTTGCCTCGCCGGATAACCCCAGCGAAGCGGATCCAAAAATTAAGATTAGTGTTCAACACATTCTTTCGAATGGTCGGAACTCCAGCGTACCTTGAGTAACTGGGTTAAAACCGACGACAACAGCGAGACGACGCCTCTTATATATTTCTATGTATCAATCGATGCCCGCGTCGGACACTAGAGAGCGCACGTTTGAATAGACGCAGACGCGCGAGGAGGTGTGAGTGAGAGAGGTAGGGGAGGAGGAGAGACGGCAGACAACGAAAGAAAGGGGGGAAAGTAGTGGAGTGGGAGAAAAGAGGGGAGGGGAGGAGATTGTTGGTTCGACTCCGCGCGTGGTAATTTTTTTAAGTTTTGCATTTTTCTTTTTGGTTTTTATGTGTGCAGATAGAGTACTGTAACTGTTGTATACATGTTTAGTTTGAAGTTTTTTGTTGTATTATGACTAGAAAATGGCAACTTGAAAAAGTATATTTCATGAAACAACTACAACACTCWATACAGAACGTTCCGGTTGTCGAATTGCTACAGAAGTCTGCACAACATTTGATGTTTTCGCGCCAATCATCACCACTTTATTCCTGAAAAAGCTGTAATTTTTTTTCTCTAAAATACCCGAACAGCTTCCTTACAATCTCAACTGTTTTAGAATAGAATTTCTATATGGCGGAAAAAATATGAGCAATGAAACCGTATTAGCAGATGAATGAGTTGCAAACCACAGTATACACAACTCGGTTGATAGTTGTGCTTGCTTTAATTCCAAAAATATAATAATAACTAAACAGCAAGGAGGTACGAAACAAAAAGATGACATGGCAAATCGAACCAAAAGACTTTGAATGGCATCTTTGTGTTTTTGATATCGAGATGCAGAGATTCTCAGTTTCAAAGCTACCATCATTCGGAGAATATCCAGAAGAAAAAAATAAATAAAGATGAAAGTATGAACCCTCCGAGAACTGTTACCAGTAGCAAGAATACGAACCACCATGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGTTTTGCATTTTTCTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAGGAATAAAGTGGTGAT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TAAGTTTTGCATTTTTCTTTTTGGTTTTTATGTGTGCAGATAGAGTACTGTAACTGTTGTATACATGTTTAGTTTGAAGTTTTTTGTTGTATTATGACTAGAAAATGGCAACTTGAAAAAGTATATTTCATGAAACAACTACAACACTCAATACAGAACGTTCCGGTTGTCGAATTGCTACAGAAGTCTGCACAACATTTGATGTTTTCGCGCCAATCATCACCACTTTATTCCTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TAAGTTTTGCATTTTTCTTTTTGGTTTTTATGTGTGCAGATAGAGTACTGTAACTGTTGTATACATGTTTAGTTTGAAGTTTTTTGTTGTATTATGACTAGAAAATGGCAACTTGAAAAAGTATATTTCATGAAACAACTACAACACTCWATACAGAACGTTCCGGTTGTCGAATTGCTACAGAAGTCTGCACAACATTTGATGTTTTCGCGCCAATCATCACCACTTTATTCCTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26599</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>54311</contig_pos>
        <strand>+</strand>
        <context>AAATCCTTCT[C/T]ATCCAAAATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGAGGAATTCAATCCCTATCTCCCCTTCTTCAAAAAATCAAATCCTTCT</left_flank>
        <right_flank>ATCCAAAATGAGATCATTTGAATTTCGAACATCCACAAGTTCCAAAAAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTCTGAATATCAGTCTGAGCTTTTTACACGTATTTATCACACTTACAGTAAAATTCTTGAATCTGTTTCGTCATTTCAAGATGATACGTTATCTGACGCTGATAAGAGAATCGTGTGGAAGAATATTGAATTGCTTCAAAGAATAAACATCACATCACATGAACTACAAGATGGATTGGAGCAGCATGGTTTCAACAACGATTTGCAAGGTTTTGCCTCTGTTGAACGTACGCGAGATGTCACTGAAAAACTGAATGCAATGATGGATGAAGTCAAGAACTTCAAGAAGGGAATCGATTCGAAACTATTAAAAGTTGAGAAGGAGATGGAAACGTTGGAAGCATTGAGAGAAGGAAACGTGGTCAATGAAATTAAAAACCGTTTTCAAAATCTGACTAAATCTTCGGATTTTCTAACAAACTTTACTACTGTTTTTCATGGAGAATATGGAGGAATTCAATCCCTATCTCCCCTTCTTCAAAAAATCAAATCCTTCTCATCCAAAATGAGATCATTTGAATTTCGAACATCCACAAGTTCCAAAAAATGGTCTACATTTGAAAATCATTTCCAACATACGAAAATTCAATCTGGCAGCCTGACGAAGAAGTTCTCAAATTTCCGAGATTGTGTTCAAAACTTTGATTTTCAAATGAGTTTCCCGATAGATTTCTTAGCTGATTTTGATGAAAAATTGACTGCAGTTCGTTCAATGGATTTGGATATTCAGAACACTACGAAACGTTTAGAGAAACTTGCAGAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTTGGGTTTTTAAAAAGATAGATTTAAAAAAACATTCTTATCATGCTCATCTTTACTATTAAAGGGGGACTCCGACCAGAAAT</canonical>
            <polymorphic>GCTTCTGAATATCAGTCTGAGCTTTTTACACGTATTTATCACACTTACAGTAAAATTCTTGAATCTGTTTCGTCATTTCAAGATGATACGTTATCTGACGCTGATAAGAGAATCGTGTGGAAGAATATTGAATTGCTTCAAAGAATAAACATCACATCACATGAACTACAAGATGGATTGGAGCAGCATGGTTTCAACAACGATTTGCAAGGTTTTGCCTCTGTTGAACGTACGCGAGATGTCACTGAAAAACTGAATGCAATGATGGATGAAGTCAAGAACTTCAAGAAGGGAATCGATTCGAAACTATTAAAAGTTGAGAAGGAGATGGAAACGTTGGAAGCATTGAGAGAAGGAAACGTGGTCAATGAAATTAAAAACCGTTTTCAAAATCTGACTAAATCTTCGGATTTTCTAACAAACTTTACTACTGTTTTTCATGGAGAATATGGAGGAATTCAATCCCTATCTCCCCTTCTTCAAAAAATCAAATCCTTCTYATCCAAAATGAGATCATTTGAATTTCGAACATCCACAAGTTCCAAAAAATGGTCTACATTTGAAAATCATTTCCAACATACGAAAATTCAATCTGGCAGCCTGACGAAGAAGTTCTCAAATTTCCGAGATTGTGTTCAAAACTTTGATTTTCAAATGAGTTTCCCGATAGATTTCTTAGCTGATTTTGATGAAAAATTGACTGCAGTTCGTTCAATGGATTTGGATATTCAGAACACTACGAAACGTTTAGAGAAACTTGCAGAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTTGGGTTTTTAAAAAGATAGATTTAAAAAAACATTCTTATCATGCTCATCTTTACTATTAAAGGGGGACTCCGACCAGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATCTTCGGATTTTCTAACAA</pcr_primer_p1>
		<pcr_primer_p2>ATCAAAGTTTTGAACACAATCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAATCTTCGGATTTTCTAACAAACTTTACTACTGTTTTTCATGGAGAATATGGAGGAATTCAATCCCTATCTCCCCTTCTTCAAAAAATCAAATCCTTCTCATCCAAAATGAGATCATTTGAATTTCGAACATCCACAAGTTCCAAAAAATGGTCTACATTTGAAAATCATTTCCAACATACGAAAATTCAATCTGGCAGCCTGACGAAGAAGTTCTCAAATTTCCGAGATTGTGTTCAAAACTTTGAT</canonical_amplicon>
		<polymorphic_amplicon>TAAATCTTCGGATTTTCTAACAAACTTTACTACTGTTTTTCATGGAGAATATGGAGGAATTCAATCCCTATCTCCCCTTCTTCAAAAAATCAAATCCTTCTYATCCAAAATGAGATCATTTGAATTTCGAACATCCACAAGTTCCAAAAAATGGTCTACATTTGAAAATCATTTCCAACATACGAAAATTCAATCTGGCAGCCTGACGAAGAAGTTCTCAAATTTCCGAGATTGTGTTCAAAACTTTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26600</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>54378</contig_pos>
        <strand>+</strand>
        <context>CATTTGAAAA[C/T]CATTTCCAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGAATTTCGAACATCCACAAGTTCCAAAAAATGGTCTACATTTGAAAA</left_flank>
        <right_flank>CATTTCCAACATACGAAAATTCAATCTGGCAGCCTGACGAAGAAGTTCTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGTCATTTCAAGATGATACGTTATCTGACGCTGATAAGAGAATCGTGTGGAAGAATATTGAATTGCTTCAAAGAATAAACATCACATCACATGAACTACAAGATGGATTGGAGCAGCATGGTTTCAACAACGATTTGCAAGGTTTTGCCTCTGTTGAACGTACGCGAGATGTCACTGAAAAACTGAATGCAATGATGGATGAAGTCAAGAACTTCAAGAAGGGAATCGATTCGAAACTATTAAAAGTTGAGAAGGAGATGGAAACGTTGGAAGCATTGAGAGAAGGAAACGTGGTCAATGAAATTAAAAACCGTTTTCAAAATCTGACTAAATCTTCGGATTTTCTAACAAACTTTACTACTGTTTTTCATGGAGAATATGGAGGAATTCAATCCCTATCTCCCCTTCTTCAAAAAATCAAATCCTTCTCATCCAAAATGAGATCATTTGAATTTCGAACATCCACAAGTTCCAAAAAATGGTCTACATTTGAAAATCATTTCCAACATACGAAAATTCAATCTGGCAGCCTGACGAAGAAGTTCTCAAATTTCCGAGATTGTGTTCAAAACTTTGATTTTCAAATGAGTTTCCCGATAGATTTCTTAGCTGATTTTGATGAAAAATTGACTGCAGTTCGTTCAATGGATTTGGATATTCAGAACACTACGAAACGTTTAGAGAAACTTGCAGAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTTGGGTTTTTAAAAAGATAGATTTAAAAAAACATTCTTATCATGCTCATCTTTACTATTAAAGGGGGACTCCGACCAGAAATTTTTATTGCATTAAAATGTGTTAAAATTTATCTATTTTTCAAATATTATTGCGAAAAAATTCAAAGA</canonical>
            <polymorphic>TTTCGTCATTTCAAGATGATACGTTATCTGACGCTGATAAGAGAATCGTGTGGAAGAATATTGAATTGCTTCAAAGAATAAACATCACATCACATGAACTACAAGATGGATTGGAGCAGCATGGTTTCAACAACGATTTGCAAGGTTTTGCCTCTGTTGAACGTACGCGAGATGTCACTGAAAAACTGAATGCAATGATGGATGAAGTCAAGAACTTCAAGAAGGGAATCGATTCGAAACTATTAAAAGTTGAGAAGGAGATGGAAACGTTGGAAGCATTGAGAGAAGGAAACGTGGTCAATGAAATTAAAAACCGTTTTCAAAATCTGACTAAATCTTCGGATTTTCTAACAAACTTTACTACTGTTTTTCATGGAGAATATGGAGGAATTCAATCCCTATCTCCCCTTCTTCAAAAAATCAAATCCTTCTCATCCAAAATGAGATCATTTGAATTTCGAACATCCACAAGTTCCAAAAAATGGTCTACATTTGAAAAYCATTTCCAACATACGAAAATTCAATCTGGCAGCCTGACGAAGAAGTTCTCAAATTTCCGAGATTGTGTTCAAAACTTTGATTTTCAAATGAGTTTCCCGATAGATTTCTTAGCTGATTTTGATGAAAAATTGACTGCAGTTCGTTCAATGGATTTGGATATTCAGAACACTACGAAACGTTTAGAGAAACTTGCAGAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTTGGGTTTTTAAAAAGATAGATTTAAAAAAACATTCTTATCATGCTCATCTTTACTATTAAAGGGGGACTCCGACCAGAAATTTTTATTGCATTAAAATGTGTTAAAATTTATCTATTTTTCAAATATTATTGCGAAAAAATTCAAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATCTTCGGATTTTCTAACAA</pcr_primer_p1>
		<pcr_primer_p2>ATCAAAGTTTTGAACACAATCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAATCTTCGGATTTTCTAACAAACTTTACTACTGTTTTTCATGGAGAATATGGAGGAATTCAATCCCTATCTCCCCTTCTTCAAAAAATCAAATCCTTCTCATCCAAAATGAGATCATTTGAATTTCGAACATCCACAAGTTCCAAAAAATGGTCTACATTTGAAAATCATTTCCAACATACGAAAATTCAATCTGGCAGCCTGACGAAGAAGTTCTCAAATTTCCGAGATTGTGTTCAAAACTTTGAT</canonical_amplicon>
		<polymorphic_amplicon>TAAATCTTCGGATTTTCTAACAAACTTTACTACTGTTTTTCATGGAGAATATGGAGGAATTCAATCCCTATCTCCCCTTCTTCAAAAAATCAAATCCTTCTCATCCAAAATGAGATCATTTGAATTTCGAACATCCACAAGTTCCAAAAAATGGTCTACATTTGAAAAYCATTTCCAACATACGAAAATTCAATCTGGCAGCCTGACGAAGAAGTTCTCAAATTTCCGAGATTGTGTTCAAAACTTTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26601</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>54534</contig_pos>
        <strand>+</strand>
        <context>CAATGGATTT[A/G]KATATTCAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTTAGCTGATTTTGATGAAAAATTGACTGCAGTTCGTTCAATGGATTT</left_flank>
        <right_flank>GATATTCAGAACACTACGAAACGTTTAGAGAAACTTGCAGAAACAACAGA</right_flank>
        <qual_score>145</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAACGTACGCGAGATGTCACTGAAAAACTGAATGCAATGATGGATGAAGTCAAGAACTTCAAGAAGGGAATCGATTCGAAACTATTAAAAGTTGAGAAGGAGATGGAAACGTTGGAAGCATTGAGAGAAGGAAACGTGGTCAATGAAATTAAAAACCGTTTTCAAAATCTGACTAAATCTTCGGATTTTCTAACAAACTTTACTACTGTTTTTCATGGAGAATATGGAGGAATTCAATCCCTATCTCCCCTTCTTCAAAAAATCAAATCCTTCTCATCCAAAATGAGATCATTTGAATTTCGAACATCCACAAGTTCCAAAAAATGGTCTACATTTGAAAATCATTTCCAACATACGAAAATTCAATCTGGCAGCCTGACGAAGAAGTTCTCAAATTTCCGAGATTGTGTTCAAAACTTTGATTTTCAAATGAGTTTCCCGATAGATTTCTTAGCTGATTTTGATGAAAAATTGACTGCAGTTCGTTCAATGGATTTGGATATTCAGAACACTACGAAACGTTTAGAGAAACTTGCAGAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTTGGGTTTTTAAAAAGATAGATTTAAAAAAACATTCTTATCATGCTCATCTTTACTATTAAAGGGGGACTCCGACCAGAAATTTTTATTGCATTAAAATGTGTTAAAATTTATCTATTTTTCAAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAAGGAAGAAAATTCAAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCACCTGACAGCCTTTTCTTCAAGTCGCCGACAGTGGTTTTTTACGTTTTTTACCTG</canonical>
            <polymorphic>TTGAACGTACGCGAGATGTCACTGAAAAACTGAATGCAATGATGGATGAAGTCAAGAACTTCAAGAAGGGAATCGATTCGAAACTATTAAAAGTTGAGAAGGAGATGGAAACGTTGGAAGCATTGAGAGAAGGAAACGTGGTCAATGAAATTAAAAACCGTTTTCAAAATCTGACTAAATCTTCGGATTTTCTAACAAACTTTACTACTGTTTTTCATGGAGAATATGGAGGAATTCAATCCCTATCTCCCCTTCTTCAAAAAATCAAATCCTTCTCATCCAAAATGAGATCATTTGAATTTCGAACATCCACAAGTTCCAAAAAATGGTCTACATTTGAAAATCATTTCCAACATACGAAAATTCAATCTGGCAGCCTGACGAAGAAGTTCTCAAATTTCCGAGATTGTGTTCAAAACTTTGATTTTCAAATGAGTTTCCCGATAGATTTCTTAGCTGATTTTGATGAAAAATTGACTGCAGTTCGTTCAATGGATTTRGATATTCAGAACACTACGAAACGTTTAGAGAAACTTGCAGAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTTGGGTTTTTAAAAAGATAGATTTAAAAAAACATTCTTATCATGCTCATCTTTACTATTAAAGGGGGACTCCGACCAGAAATTTTTATTGCATTAAAATGTGTTAAAATTTATCTATTTTTCAAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAAGGAAGAAAATTCAAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCACCTGACAGCCTTTTCTTCAAGTCGCCGACAGTGGTTTTTTACGTTTTTTACCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTCTTAGCTGATTTTGATGA</pcr_primer_p1>
		<pcr_primer_p2>AAGACTTACCAACCGTAAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GATTTCTTAGCTGATTTTGATGAAAAATTGACTGCAGTTCGTTCAATGGATTTGGATATTCAGAACACTACGAAACGTTTAGAGAAACTTGCAGAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTT</canonical_amplicon>
		<polymorphic_amplicon>GATTTCTTAGCTGATTTTGATGAAAAATTGACTGCAGTTCGTTCAATGGATTTRGATATTCAGAACACTACGAAACGTTTAGAGAAACTTGCAGAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26602</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>54535</contig_pos>
        <strand>+</strand>
        <context>AATGGATTTR[G/T]ATATTCAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTTAGCTGATTTTGATGAAAAATTGACTGCAGTTCGTTCAATGGATTTG</left_flank>
        <right_flank>ATATTCAGAACACTACGAAACGTTTAGAGAAACTTGCAGAAACAACAGAT</right_flank>
        <qual_score>149</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAACGTACGCGAGATGTCACTGAAAAACTGAATGCAATGATGGATGAAGTCAAGAACTTCAAGAAGGGAATCGATTCGAAACTATTAAAAGTTGAGAAGGAGATGGAAACGTTGGAAGCATTGAGAGAAGGAAACGTGGTCAATGAAATTAAAAACCGTTTTCAAAATCTGACTAAATCTTCGGATTTTCTAACAAACTTTACTACTGTTTTTCATGGAGAATATGGAGGAATTCAATCCCTATCTCCCCTTCTTCAAAAAATCAAATCCTTCTCATCCAAAATGAGATCATTTGAATTTCGAACATCCACAAGTTCCAAAAAATGGTCTACATTTGAAAATCATTTCCAACATACGAAAATTCAATCTGGCAGCCTGACGAAGAAGTTCTCAAATTTCCGAGATTGTGTTCAAAACTTTGATTTTCAAATGAGTTTCCCGATAGATTTCTTAGCTGATTTTGATGAAAAATTGACTGCAGTTCGTTCAATGGATTTGGATATTCAGAACACTACGAAACGTTTAGAGAAACTTGCAGAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTTGGGTTTTTAAAAAGATAGATTTAAAAAAACATTCTTATCATGCTCATCTTTACTATTAAAGGGGGACTCCGACCAGAAATTTTTATTGCATTAAAATGTGTTAAAATTTATCTATTTTTCAAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAAGGAAGAAAATTCAAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCACCTGACAGCCTTTTCTTCAAGTCGCCGACAGTGGTTTTTTACGTTTTTTACCTGC</canonical>
            <polymorphic>TGAACGTACGCGAGATGTCACTGAAAAACTGAATGCAATGATGGATGAAGTCAAGAACTTCAAGAAGGGAATCGATTCGAAACTATTAAAAGTTGAGAAGGAGATGGAAACGTTGGAAGCATTGAGAGAAGGAAACGTGGTCAATGAAATTAAAAACCGTTTTCAAAATCTGACTAAATCTTCGGATTTTCTAACAAACTTTACTACTGTTTTTCATGGAGAATATGGAGGAATTCAATCCCTATCTCCCCTTCTTCAAAAAATCAAATCCTTCTCATCCAAAATGAGATCATTTGAATTTCGAACATCCACAAGTTCCAAAAAATGGTCTACATTTGAAAATCATTTCCAACATACGAAAATTCAATCTGGCAGCCTGACGAAGAAGTTCTCAAATTTCCGAGATTGTGTTCAAAACTTTGATTTTCAAATGAGTTTCCCGATAGATTTCTTAGCTGATTTTGATGAAAAATTGACTGCAGTTCGTTCAATGGATTTGKATATTCAGAACACTACGAAACGTTTAGAGAAACTTGCAGAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTTGGGTTTTTAAAAAGATAGATTTAAAAAAACATTCTTATCATGCTCATCTTTACTATTAAAGGGGGACTCCGACCAGAAATTTTTATTGCATTAAAATGTGTTAAAATTTATCTATTTTTCAAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAAGGAAGAAAATTCAAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCACCTGACAGCCTTTTCTTCAAGTCGCCGACAGTGGTTTTTTACGTTTTTTACCTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTCTTAGCTGATTTTGATGA</pcr_primer_p1>
		<pcr_primer_p2>AAGACTTACCAACCGTAAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GATTTCTTAGCTGATTTTGATGAAAAATTGACTGCAGTTCGTTCAATGGATTTGGATATTCAGAACACTACGAAACGTTTAGAGAAACTTGCAGAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTT</canonical_amplicon>
		<polymorphic_amplicon>GATTTCTTAGCTGATTTTGATGAAAAATTGACTGCAGTTCGTTCAATGGATTTGKATATTCAGAACACTACGAAACGTTTAGAGAAACTTGCAGAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26603</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>54547</contig_pos>
        <strand>+</strand>
        <context>TATTCAGAAC[A/G]CTACGAAACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGATGAAAAATTGACTGCAGTTCGTTCAATGGATTTGGATATTCAGAAC</left_flank>
        <right_flank>CTACGAAACGTTTAGAGAAACTTGCAGAAACAACAGATAACCTTCTCACG</right_flank>
        <qual_score>145</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATGTCACTGAAAAACTGAATGCAATGATGGATGAAGTCAAGAACTTCAAGAAGGGAATCGATTCGAAACTATTAAAAGTTGAGAAGGAGATGGAAACGTTGGAAGCATTGAGAGAAGGAAACGTGGTCAATGAAATTAAAAACCGTTTTCAAAATCTGACTAAATCTTCGGATTTTCTAACAAACTTTACTACTGTTTTTCATGGAGAATATGGAGGAATTCAATCCCTATCTCCCCTTCTTCAAAAAATCAAATCCTTCTCATCCAAAATGAGATCATTTGAATTTCGAACATCCACAAGTTCCAAAAAATGGTCTACATTTGAAAATCATTTCCAACATACGAAAATTCAATCTGGCAGCCTGACGAAGAAGTTCTCAAATTTCCGAGATTGTGTTCAAAACTTTGATTTTCAAATGAGTTTCCCGATAGATTTCTTAGCTGATTTTGATGAAAAATTGACTGCAGTTCGTTCAATGGATTTGGATATTCAGAACACTACGAAACGTTTAGAGAAACTTGCAGAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTTGGGTTTTTAAAAAGATAGATTTAAAAAAACATTCTTATCATGCTCATCTTTACTATTAAAGGGGGACTCCGACCAGAAATTTTTATTGCATTAAAATGTGTTAAAATTTATCTATTTTTCAAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAAGGAAGAAAATTCAAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCACCTGACAGCCTTTTCTTCAAGTCGCCGACAGTGGTTTTTTACGTTTTTTACCTGCCGGACATGAAAT</canonical>
            <polymorphic>AGATGTCACTGAAAAACTGAATGCAATGATGGATGAAGTCAAGAACTTCAAGAAGGGAATCGATTCGAAACTATTAAAAGTTGAGAAGGAGATGGAAACGTTGGAAGCATTGAGAGAAGGAAACGTGGTCAATGAAATTAAAAACCGTTTTCAAAATCTGACTAAATCTTCGGATTTTCTAACAAACTTTACTACTGTTTTTCATGGAGAATATGGAGGAATTCAATCCCTATCTCCCCTTCTTCAAAAAATCAAATCCTTCTCATCCAAAATGAGATCATTTGAATTTCGAACATCCACAAGTTCCAAAAAATGGTCTACATTTGAAAATCATTTCCAACATACGAAAATTCAATCTGGCAGCCTGACGAAGAAGTTCTCAAATTTCCGAGATTGTGTTCAAAACTTTGATTTTCAAATGAGTTTCCCGATAGATTTCTTAGCTGATTTTGATGAAAAATTGACTGCAGTTCGTTCAATGGATTTGGATATTCAGAACRCTACGAAACGTTTAGAGAAACTTGCAGAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTTGGGTTTTTAAAAAGATAGATTTAAAAAAACATTCTTATCATGCTCATCTTTACTATTAAAGGGGGACTCCGACCAGAAATTTTTATTGCATTAAAATGTGTTAAAATTTATCTATTTTTCAAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAAGGAAGAAAATTCAAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCACCTGACAGCCTTTTCTTCAAGTCGCCGACAGTGGTTTTTTACGTTTTTTACCTGCCGGACATGAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>172 122 119 104 102 99 59 48 34 33 32 26 23 14 8 5</canonical_bands>
                <polymorphic_bands>172 150 122 119 104 99 59 34 33 32 26 23 14 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTCTTAGCTGATTTTGATGA</pcr_primer_p1>
		<pcr_primer_p2>AAGACTTACCAACCGTAAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GATTTCTTAGCTGATTTTGATGAAAAATTGACTGCAGTTCGTTCAATGGATTTGGATATTCAGAACACTACGAAACGTTTAGAGAAACTTGCAGAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTT</canonical_amplicon>
		<polymorphic_amplicon>GATTTCTTAGCTGATTTTGATGAAAAATTGACTGCAGTTCGTTCAATGGATTTGGATATTCAGAACRCTACGAAACGTTTAGAGAAACTTGCAGAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26604</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>54670</contig_pos>
        <strand>+</strand>
        <context>AGAGTTTCTT[A/G]ATGAACATGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTT</left_flank>
        <right_flank>ATGAACATGCATGGTGTCAGAATTTTCAAGATGACTACACTTTTTACGGT</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTGGTCAATGAAATTAAAAACCGTTTTCAAAATCTGACTAAATCTTCGGATTTTCTAACAAACTTTACTACTGTTTTTCATGGAGAATATGGAGGAATTCAATCCCTATCTCCCCTTCTTCAAAAAATCAAATCCTTCTCATCCAAAATGAGATCATTTGAATTTCGAACATCCACAAGTTCCAAAAAATGGTCTACATTTGAAAATCATTTCCAACATACGAAAATTCAATCTGGCAGCCTGACGAAGAAGTTCTCAAATTTCCGAGATTGTGTTCAAAACTTTGATTTTCAAATGAGTTTCCCGATAGATTTCTTAGCTGATTTTGATGAAAAATTGACTGCAGTTCGTTCAATGGATTTGGATATTCAGAACACTACGAAACGTTTAGAGAAACTTGCAGAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTTGGGTTTTTAAAAAGATAGATTTAAAAAAACATTCTTATCATGCTCATCTTTACTATTAAAGGGGGACTCCGACCAGAAATTTTTATTGCATTAAAATGTGTTAAAATTTATCTATTTTTCAAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAAGGAAGAAAATTCAAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCACCTGACAGCCTTTTCTTCAAGTCGCCGACAGTGGTTTTTTACGTTTTTTACCTGCCGGACATGAAATTGAAAAAAATCCGGAAAATTTGCCTCGTAGGAAAGGCGCCCGCTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTTCTTTTCAACGCCG</canonical>
            <polymorphic>CGTGGTCAATGAAATTAAAAACCGTTTTCAAAATCTGACTAAATCTTCGGATTTTCTAACAAACTTTACTACTGTTTTTCATGGAGAATATGGAGGAATTCAATCCCTATCTCCCCTTCTTCAAAAAATCAAATCCTTCTCATCCAAAATGAGATCATTTGAATTTCGAACATCCACAAGTTCCAAAAAATGGTCTACATTTGAAAATCATTTCCAACATACGAAAATTCAATCTGGCAGCCTGACGAAGAAGTTCTCAAATTTCCGAGATTGTGTTCAAAACTTTGATTTTCAAATGAGTTTCCCGATAGATTTCTTAGCTGATTTTGATGAAAAATTGACTGCAGTTCGTTCAATGGATTTGGATATTCAGAACACTACGAAACGTTTAGAGAAACTTGCAGAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTRATGAACATGCATGGTGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTTGGGTTTTTAAAAAGATAGATTTAAAAAAACATTCTTATCATGCTCATCTTTACTATTAAAGGGGGACTCCGACCAGAAATTTTTATTGCATTAAAATGTGTTAAAATTTATCTATTTTTCAAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAAGGAAGAAAATTCAAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCACCTGACAGCCTTTTCTTCAAGTCGCCGACAGTGGTTTTTTACGTTTTTTACCTGCCGGACATGAAATTGAAAAAAATCCGGAAAATTTGCCTCGTAGGAAAGGCGCCCGCTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTTCTTTTCAACGCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>361 304 184 112 30 9</canonical_bands>
                <polymorphic_bands>361 304 184 112 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTCTTAGCTGATTTTGATGA</pcr_primer_p1>
		<pcr_primer_p2>AAGACTTACCAACCGTAAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GATTTCTTAGCTGATTTTGATGAAAAATTGACTGCAGTTCGTTCAATGGATTTGGATATTCAGAACACTACGAAACGTTTAGAGAAACTTGCAGAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTT</canonical_amplicon>
		<polymorphic_amplicon>GATTTCTTAGCTGATTTTGATGAAAAATTGACTGCAGTTCGTTCAATGGATTTGGATATTCAGAACACTACGAAACGTTTAGAGAAACTTGCAGAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTRATGAACATGCATGGTGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26605</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>54684</contig_pos>
        <strand>+</strand>
        <context>AACATGCATG[C/G]TGTCWGAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATG</left_flank>
        <right_flank>TGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTTGGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAAAAACCGTTTTCAAAATCTGACTAAATCTTCGGATTTTCTAACAAACTTTACTACTGTTTTTCATGGAGAATATGGAGGAATTCAATCCCTATCTCCCCTTCTTCAAAAAATCAAATCCTTCTCATCCAAAATGAGATCATTTGAATTTCGAACATCCACAAGTTCCAAAAAATGGTCTACATTTGAAAATCATTTCCAACATACGAAAATTCAATCTGGCAGCCTGACGAAGAAGTTCTCAAATTTCCGAGATTGTGTTCAAAACTTTGATTTTCAAATGAGTTTCCCGATAGATTTCTTAGCTGATTTTGATGAAAAATTGACTGCAGTTCGTTCAATGGATTTGGATATTCAGAACACTACGAAACGTTTAGAGAAACTTGCAGAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTTGGGTTTTTAAAAAGATAGATTTAAAAAAACATTCTTATCATGCTCATCTTTACTATTAAAGGGGGACTCCGACCAGAAATTTTTATTGCATTAAAATGTGTTAAAATTTATCTATTTTTCAAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAAGGAAGAAAATTCAAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCACCTGACAGCCTTTTCTTCAAGTCGCCGACAGTGGTTTTTTACGTTTTTTACCTGCCGGACATGAAATTGAAAAAAATCCGGAAAATTTGCCTCGTAGGAAAGGCGCCCGCTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTTCTTTTCAACGCCGTTTTTTGGGAATTT</canonical>
            <polymorphic>TTAAAAACCGTTTTCAAAATCTGACTAAATCTTCGGATTTTCTAACAAACTTTACTACTGTTTTTCATGGAGAATATGGAGGAATTCAATCCCTATCTCCCCTTCTTCAAAAAATCAAATCCTTCTCATCCAAAATGAGATCATTTGAATTTCGAACATCCACAAGTTCCAAAAAATGGTCTACATTTGAAAATCATTTCCAACATACGAAAATTCAATCTGGCAGCCTGACGAAGAAGTTCTCAAATTTCCGAGATTGTGTTCAAAACTTTGATTTTCAAATGAGTTTCCCGATAGATTTCTTAGCTGATTTTGATGAAAAATTGACTGCAGTTCGTTCAATGGATTTGGATATTCAGAACACTACGAAACGTTTAGAGAAACTTGCAGAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGSTGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTTGGGTTTTTAAAAAGATAGATTTAAAAAAACATTCTTATCATGCTCATCTTTACTATTAAAGGGGGACTCCGACCAGAAATTTTTATTGCATTAAAATGTGTTAAAATTTATCTATTTTTCAAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAAGGAAGAAAATTCAAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCACCTGACAGCCTTTTCTTCAAGTCGCCGACAGTGGTTTTTTACGTTTTTTACCTGCCGGACATGAAATTGAAAAAAATCCGGAAAATTTGCCTCGTAGGAAAGGCGCCCGCTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTTCTTTTCAACGCCGTTTTTTGGGAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>162 122 104 102 99 84 59 48 47 33 32 26 26 23 14 14 5</canonical_bands>
                <polymorphic_bands>162 122 104 102 99 84 82 48 47 33 32 26 26 14 14 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAACAACAGATAACCTTCTCAC</pcr_primer_p1>
		<pcr_primer_p2>TAATGCAATAAAAATTTCTGGTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTTGGGTTTTTAAAAAGATAGATTTAAAAAAACATTCTTATCATGCTCATCTTTACTATTAAAGGGGGACTCCGACCAGAAATTTTTATTGCATTA</canonical_amplicon>
		<polymorphic_amplicon>GAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGSTGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTTGGGTTTTTAAAAAGATAGATTTAAAAAAACATTCTTATCATGCTCATCTTTACTATTAAAGGGGGACTCCGACCAGAAATTTTTATTGCATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26606</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>54689</contig_pos>
        <strand>+</strand>
        <context>GCATGSTGTC[A/T]GAATTTTCRA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTC</left_flank>
        <right_flank>GAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTTGGGTTTTT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCGTTTTCAAAATCTGACTAAATCTTCGGATTTTCTAACAAACTTTACTACTGTTTTTCATGGAGAATATGGAGGAATTCAATCCCTATCTCCCCTTCTTCAAAAAATCAAATCCTTCTCATCCAAAATGAGATCATTTGAATTTCGAACATCCACAAGTTCCAAAAAATGGTCTACATTTGAAAATCATTTCCAACATACGAAAATTCAATCTGGCAGCCTGACGAAGAAGTTCTCAAATTTCCGAGATTGTGTTCAAAACTTTGATTTTCAAATGAGTTTCCCGATAGATTTCTTAGCTGATTTTGATGAAAAATTGACTGCAGTTCGTTCAATGGATTTGGATATTCAGAACACTACGAAACGTTTAGAGAAACTTGCAGAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTTGGGTTTTTAAAAAGATAGATTTAAAAAAACATTCTTATCATGCTCATCTTTACTATTAAAGGGGGACTCCGACCAGAAATTTTTATTGCATTAAAATGTGTTAAAATTTATCTATTTTTCAAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAAGGAAGAAAATTCAAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCACCTGACAGCCTTTTCTTCAAGTCGCCGACAGTGGTTTTTTACGTTTTTTACCTGCCGGACATGAAATTGAAAAAAATCCGGAAAATTTGCCTCGTAGGAAAGGCGCCCGCTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTTCTTTTCAACGCCGTTTTTTGGGAATTTCGGAT</canonical>
            <polymorphic>AACCGTTTTCAAAATCTGACTAAATCTTCGGATTTTCTAACAAACTTTACTACTGTTTTTCATGGAGAATATGGAGGAATTCAATCCCTATCTCCCCTTCTTCAAAAAATCAAATCCTTCTCATCCAAAATGAGATCATTTGAATTTCGAACATCCACAAGTTCCAAAAAATGGTCTACATTTGAAAATCATTTCCAACATACGAAAATTCAATCTGGCAGCCTGACGAAGAAGTTCTCAAATTTCCGAGATTGTGTTCAAAACTTTGATTTTCAAATGAGTTTCCCGATAGATTTCTTAGCTGATTTTGATGAAAAATTGACTGCAGTTCGTTCAATGGATTTGGATATTCAGAACACTACGAAACGTTTAGAGAAACTTGCAGAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCWGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTTGGGTTTTTAAAAAGATAGATTTAAAAAAACATTCTTATCATGCTCATCTTTACTATTAAAGGGGGACTCCGACCAGAAATTTTTATTGCATTAAAATGTGTTAAAATTTATCTATTTTTCAAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAAGGAAGAAAATTCAAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCACCTGACAGCCTTTTCTTCAAGTCGCCGACAGTGGTTTTTTACGTTTTTTACCTGCCGGACATGAAATTGAAAAAAATCCGGAAAATTTGCCTCGTAGGAAAGGCGCCCGCTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTTCTTTTCAACGCCGTTTTTTGGGAATTTCGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACAACAGATAACCTTCTCAC</pcr_primer_p1>
		<pcr_primer_p2>TAATGCAATAAAAATTTCTGGTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTTGGGTTTTTAAAAAGATAGATTTAAAAAAACATTCTTATCATGCTCATCTTTACTATTAAAGGGGGACTCCGACCAGAAATTTTTATTGCATTA</canonical_amplicon>
		<polymorphic_amplicon>GAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCWGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTTGGGTTTTTAAAAAGATAGATTTAAAAAAACATTCTTATCATGCTCATCTTTACTATTAAAGGGGGACTCCGACCAGAAATTTTTATTGCATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26607</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>54698</contig_pos>
        <strand>+</strand>
        <context>CWGAATTTTC[A/G]AGATGACTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCAGAATTTTC</left_flank>
        <right_flank>AGATGACTACACTTTTTACGGTTGGTAAGTCTTGGGTTTTTAAAAAGATA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAATCTGACTAAATCTTCGGATTTTCTAACAAACTTTACTACTGTTTTTCATGGAGAATATGGAGGAATTCAATCCCTATCTCCCCTTCTTCAAAAAATCAAATCCTTCTCATCCAAAATGAGATCATTTGAATTTCGAACATCCACAAGTTCCAAAAAATGGTCTACATTTGAAAATCATTTCCAACATACGAAAATTCAATCTGGCAGCCTGACGAAGAAGTTCTCAAATTTCCGAGATTGTGTTCAAAACTTTGATTTTCAAATGAGTTTCCCGATAGATTTCTTAGCTGATTTTGATGAAAAATTGACTGCAGTTCGTTCAATGGATTTGGATATTCAGAACACTACGAAACGTTTAGAGAAACTTGCAGAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTTGGGTTTTTAAAAAGATAGATTTAAAAAAACATTCTTATCATGCTCATCTTTACTATTAAAGGGGGACTCCGACCAGAAATTTTTATTGCATTAAAATGTGTTAAAATTTATCTATTTTTCAAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAAGGAAGAAAATTCAAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCACCTGACAGCCTTTTCTTCAAGTCGCCGACAGTGGTTTTTTACGTTTTTTACCTGCCGGACATGAAATTGAAAAAAATCCGGAAAATTTGCCTCGTAGGAAAGGCGCCCGCTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTTCTTTTCAACGCCGTTTTTTGGGAATTTCGGATTTTTTTGAA</canonical>
            <polymorphic>CAAAATCTGACTAAATCTTCGGATTTTCTAACAAACTTTACTACTGTTTTTCATGGAGAATATGGAGGAATTCAATCCCTATCTCCCCTTCTTCAAAAAATCAAATCCTTCTCATCCAAAATGAGATCATTTGAATTTCGAACATCCACAAGTTCCAAAAAATGGTCTACATTTGAAAATCATTTCCAACATACGAAAATTCAATCTGGCAGCCTGACGAAGAAGTTCTCAAATTTCCGAGATTGTGTTCAAAACTTTGATTTTCAAATGAGTTTCCCGATAGATTTCTTAGCTGATTTTGATGAAAAATTGACTGCAGTTCGTTCAATGGATTTGGATATTCAGAACACTACGAAACGTTTAGAGAAACTTGCAGAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCAGAATTTTCRAGATGACTACACTTTTTACGGTTGGTAAGTCTTGGGTTTTTAAAAAGATAGATTTAAAAAAACATTCTTATCATGCTCATCTTTACTATTAAAGGGGGACTCCGACCAGAAATTTTTATTGCATTAAAATGTGTTAAAATTTATCTATTTTTCAAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAAGGAAGAAAATTCAAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCACCTGACAGCCTTTTCTTCAAGTCGCCGACAGTGGTTTTTTACGTTTTTTACCTGCCGGACATGAAATTGAAAAAAATCCGGAAAATTTGCCTCGTAGGAAAGGCGCCCGCTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTTCTTTTCAACGCCGTTTTTTGGGAATTTCGGATTTTTTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACAACAGATAACCTTCTCAC</pcr_primer_p1>
		<pcr_primer_p2>TAATGCAATAAAAATTTCTGGTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTTGGGTTTTTAAAAAGATAGATTTAAAAAAACATTCTTATCATGCTCATCTTTACTATTAAAGGGGGACTCCGACCAGAAATTTTTATTGCATTA</canonical_amplicon>
		<polymorphic_amplicon>GAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCAGAATTTTCRAGATGACTACACTTTTTACGGTTGGTAAGTCTTGGGTTTTTAAAAAGATAGATTTAAAAAAACATTCTTATCATGCTCATCTTTACTATTAAAGGGGGACTCCGACCAGAAATTTTTATTGCATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26608</snp_id>
        <super_contig>c002500906.Contig1</super_contig>
        <contig_pos>54754</contig_pos>
        <strand>+</strand>
        <context>AGATAGATTT[A/T]AAAAAACATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTACACTTTTTACGGTTGGTAAGTCTTGGGTTTTTAAAAAGATAGATTT</left_flank>
        <right_flank>AAAAAACATTCTTATCATGCTCATCTTTACTATTAAAGGGGGACTCCGAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAATATGGAGGAATTCAATCCCTATCTCCCCTTCTTCAAAAAATCAAATCCTTCTCATCCAAAATGAGATCATTTGAATTTCGAACATCCACAAGTTCCAAAAAATGGTCTACATTTGAAAATCATTTCCAACATACGAAAATTCAATCTGGCAGCCTGACGAAGAAGTTCTCAAATTTCCGAGATTGTGTTCAAAACTTTGATTTTCAAATGAGTTTCCCGATAGATTTCTTAGCTGATTTTGATGAAAAATTGACTGCAGTTCGTTCAATGGATTTGGATATTCAGAACACTACGAAACGTTTAGAGAAACTTGCAGAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTTGGGTTTTTAAAAAGATAGATTTAAAAAAACATTCTTATCATGCTCATCTTTACTATTAAAGGGGGACTCCGACCAGAAATTTTTATTGCATTAAAATGTGTTAAAATTTATCTATTTTTCAAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAAGGAAGAAAATTCAAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCACCTGACAGCCTTTTCTTCAAGTCGCCGACAGTGGTTTTTTACGTTTTTTACCTGCCGGACATGAAATTGAAAAAAATCCGGAAAATTTGCCTCGTAGGAAAGGCGCCCGCTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTTCTTTTCAACGCCGTTTTTTGGGAATTTCGGATTTTTTTGAATTTTTTCGCAATAATATTCGGGAAATAGATAACTTTTAACACATTTTAATGCAATA</canonical>
            <polymorphic>AGAATATGGAGGAATTCAATCCCTATCTCCCCTTCTTCAAAAAATCAAATCCTTCTCATCCAAAATGAGATCATTTGAATTTCGAACATCCACAAGTTCCAAAAAATGGTCTACATTTGAAAATCATTTCCAACATACGAAAATTCAATCTGGCAGCCTGACGAAGAAGTTCTCAAATTTCCGAGATTGTGTTCAAAACTTTGATTTTCAAATGAGTTTCCCGATAGATTTCTTAGCTGATTTTGATGAAAAATTGACTGCAGTTCGTTCAATGGATTTGGATATTCAGAACACTACGAAACGTTTAGAGAAACTTGCAGAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTTGGGTTTTTAAAAAGATAGATTTWAAAAAACATTCTTATCATGCTCATCTTTACTATTAAAGGGGGACTCCGACCAGAAATTTTTATTGCATTAAAATGTGTTAAAATTTATCTATTTTTCAAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAAGGAAGAAAATTCAAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCACCTGACAGCCTTTTCTTCAAGTCGCCGACAGTGGTTTTTTACGTTTTTTACCTGCCGGACATGAAATTGAAAAAAATCCGGAAAATTTGCCTCGTAGGAAAGGCGCCCGCTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTTCTTTTCAACGCCGTTTTTTGGGAATTTCGGATTTTTTTGAATTTTTTCGCAATAATATTCGGGAAATAGATAACTTTTAACACATTTTAATGCAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 485 14</canonical_bands>
                <polymorphic_bands>515 485</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>484 402 35 35 14 10 10 10</canonical_bands>
                <polymorphic_bands>484 402 49 35 10 10 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAACAACAGATAACCTTCTCAC</pcr_primer_p1>
		<pcr_primer_p2>TAATGCAATAAAAATTTCTGGTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTTGGGTTTTTAAAAAGATAGATTTAAAAAAACATTCTTATCATGCTCATCTTTACTATTAAAGGGGGACTCCGACCAGAAATTTTTATTGCATTA</canonical_amplicon>
		<polymorphic_amplicon>GAAACAACAGATAACCTTCTCACGCTTATCGAACGAAGGTATCCAAATCCAGCACAAGTCGATAGAGATTTACTATCTCTATTTCGAGAGTTTCTTGATGAACATGCATGGTGTCAGAATTTTCAAGATGACTACACTTTTTACGGTTGGTAAGTCTTGGGTTTTTAAAAAGATAGATTTWAAAAAACATTCTTATCATGCTCATCTTTACTATTAAAGGGGGACTCCGACCAGAAATTTTTATTGCATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26609</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>3831</contig_pos>
        <strand>+</strand>
        <context>TTGATGTCTG[A/C]AAACAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTG</left_flank>
        <right_flank>AAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTGATTTTCGATAAAAAGAAATATCAGAAAGGAAATGAAGAAGACTCCTATTGCGTACGATTGTACATACATAAAATGTGGGAACATTGCATACAATGCATGGGAATTAGAACTGATGATGGAATATATATTGTTCTAGGTACAGTACCCTGCAGAAAGAATTTTTGAAGCACTGAAAAATCATTGCAGAACTTTTCGATTTGACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACG</canonical>
            <polymorphic>TTTTTGATTTTCGATAAAAAGAAATATCAGAAAGGAAATGAAGAAGACTCCTATTGCGTACGATTGTACATACATAAAATGTGGGAACATTGCATACAATGCATGGGAATTAGAACTGATGATGGAATATATATTGTTCTAGGTACAGTACCCTGCAGAAAGAATTTTTGAAGCACTGAAAAATCATTGCAGAACTTTTCGATTTGACTGAAATCAGGAACACATTCTCAAAAAATAAACTATGTTTATATGTTAAATGAATAATTTAAAAAATTAATTCAATTTAAAAATTAATTCATTTGTCTCCTCCGGCTATAGGTCCATTTTCTGAGGCAGACGAAATCCCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGMAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>300 188 164 117 80 29 27 25 24 19 18 9</canonical_bands>
                <polymorphic_bands>300 213 164 117 80 29 27 24 19 18 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTTGAGCTTGATCGATTG</pcr_primer_p1>
		<pcr_primer_p2>GTTGTCGTTATTTCTGTGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAAC</canonical_amplicon>
		<polymorphic_amplicon>AGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGMAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26610</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>4175</contig_pos>
        <strand>+</strand>
        <context>SATWKTTTRA[C/T]MTTTTCAGGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAA</left_flank>
        <right_flank>TTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAAATGAGAGTTGTGCCCCTTTAACACTGCTTATCTCGTTTTCGTTAGAAAATCCAAGCTTTAATTTTGTTTAGTGCACTCTAAGAAAATACGAAAAATTCTGGAATTCTGGATTTTTCCAAAAATGAGACCTCAAAAACCACTCACCATTTTGAATATCCGCCAATTTTAAAAATTTTAGAATAAACATTTATAGAATTTAAAAAAAAATCAAGAATATAGTTGGCTCCATACACAAGGAGCCTGTAGATGTCCTTAAGGGAATCAGAAATAATGTGGACGGAGAACTAGTCCGCCCTTTTATACCCCC</canonical>
            <polymorphic>CCTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAAYTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAAATGAGAGTTGTGCCCCTTTAACACTGCTTATCTCGTTTTCGTTAGAAAATCCAAGCTTTAATTTTGTTTAGTGCACTCTAAGAAAATACGAAAAATTCTGGAATTCTGGATTTTTCCAAAAATGAGACCTCAAAAACCACTCACCATTTTGAATATCCGCCAATTTTAAAAATTTTAGAATAAACATTTATAGAATTTAAAAAAAAATCAAGAATATAGTTGGCTCCATACACAAGGAGCCTGTAGATGTCCTTAAGGGAATCAGAAATAATGTGGACGGAGAACTAGTCCGCCCTTTTATACCCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGAACTACATATAGTGTGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTCAGTGCTTATTTTCAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>AAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAA</canonical_amplicon>
		<polymorphic_amplicon>AAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAAYTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26611</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>4176</contig_pos>
        <strand>+</strand>
        <context>ATWKTTTRAY[A/C]TTTTCAGGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAAC</left_flank>
        <right_flank>TTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAAATGAGAGTTGTGCCCCTTTAACACTGCTTATCTCGTTTTCGTTAGAAAATCCAAGCTTTAATTTTGTTTAGTGCACTCTAAGAAAATACGAAAAATTCTGGAATTCTGGATTTTTCCAAAAATGAGACCTCAAAAACCACTCACCATTTTGAATATCCGCCAATTTTAAAAATTTTAGAATAAACATTTATAGAATTTAAAAAAAAATCAAGAATATAGTTGGCTCCATACACAAGGAGCCTGTAGATGTCCTTAAGGGAATCAGAAATAATGTGGACGGAGAACTAGTCCGCCCTTTTATACCCCCT</canonical>
            <polymorphic>CTGGGTTCTCTGAATTTGGAGTTTGAGCTTGATCGATTGCTGCAAGATTTGAAATTACGGTTGAGAGCGTGAATCACAACAGTGTTAGAATGAAGTTTAAAGGAACCTTGTTCATTTTTTCAGCTTCAGAATATTTGGATATTATTGATGTCTGAAAACAAAAAAAAATAAAAAATTCCAGATTGTGTAAAAGCTAAGAGTTCTATAAATTACAAAATGCACATCTAATGGTGTTTTGCGAAATCTCAAATTCACAGAAATAACGACAACTACTGTAACCAAGAATTTTATTGATTTTCAAAATTGTAATTTTTTTTCCAACCGAAATGAAAGTGTTTTCAGATTACGGTAATTTTTTGATTTCTGATAAAAAGAAAACATCAGAAAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACMTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAAATGAGAGTTGTGCCCCTTTAACACTGCTTATCTCGTTTTCGTTAGAAAATCCAAGCTTTAATTTTGTTTAGTGCACTCTAAGAAAATACGAAAAATTCTGGAATTCTGGATTTTTCCAAAAATGAGACCTCAAAAACCACTCACCATTTTGAATATCCGCCAATTTTAAAAATTTTAGAATAAACATTTATAGAATTTAAAAAAAAATCAAGAATATAGTTGGCTCCATACACAAGGAGCCTGTAGATGTCCTTAAGGGAATCAGAAATAATGTGGACGGAGAACTAGTCCGCCCTTTTATACCCCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGAACTACATATAGTGTGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTCAGTGCTTATTTTCAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>AAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACTTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAA</canonical_amplicon>
		<polymorphic_amplicon>AAGGAACTACATATAGTGTGGAAATATTGAATATTATGTATGGGTATTAGAACAGAATATGAAATATATACTATTCTAGGCACAGTACCCCACAGAAATATATCATAGTTTAACMTTTTCAGGGGAAGATAGTAAACTTCAAAGTCTTGAAAAAGTATTTCAGAATCTTCCGATTTGGCTGAAAATTTCAGAGCATACTAAACAAAATTGGAGCTCTATTTTTGTAATTGACAACTTTTTCGCTAAATTCCATTTTGATGAGATATAACGGTTGAAATAAATAAAAAAACTGAAAATAAGCACTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26612</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>5196</contig_pos>
        <strand>+</strand>
        <context>CCTCTTGAGC[A/T]CCACCAGAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGAATTAATTCCTCTGGATCATTTCCCCATCATTTTTTCCTCTTGAGC</left_flank>
        <right_flank>CCACCAGAAGTTCCCAGTTCCAACTCTTTGATCTGTAAAAACAACAGTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGGTCGAGAGACGCATGTGGGCGGAGTCTAAACTCATGATCAAAAATCGTGTGTTTCCGTCAGTTTGTGCTAAACTCTGAGATTGAAGCATTGACAGAAAGTTGACAAAACATTTCTTTATCAATGAAGACAGCGCCTTGAGGAACCTTTATTGCTCAAAGTTCTTCTGTGGAGGAACAAAACTTTAAGCCAGTATATCTCGGTCTCTGTACAAGATATCAAAAACAGATCAACTAACAAAATACGTTTGACATTATAATGAACACTTTATCAATAAGCCACTTTTAAATATCTTTCTGTTCTTTTAAAGATATCGGAAGAGTGCCAAGGAAAAATGGAAGAATCGACACTATTTTTTTTGTGGGATTTGGTGATTTAAAATAGTAACAAAATTAAAAAATGAAAAAACAAAACTTTTTTATTATCCGATTCAAATAATGCTAAAAATTTGAATTAATTCCTCTGGATCATTTCCCCATCATTTTTTCCTCTTGAGCTCCACCAGAAGTTCCCAGTTCCAACTCTTTGATCTGTAAAAACAACAGTGTTTTCTCATTATTATCCGTTTTATCAAAATATTACTTTTCGAGAATGTCGACTTTCTTTTTCAGAAGCGCATTTTCGGCTCTTTAGTCTGATCGTTGGAGTGACAATTCGTTTCCAATTCGTCCCTCCTAAAAATAAGAGAAATGAATTAAGGTGAAAATAGTTCAGTAACCTTACTTTACGAAAGGACCCTCCTTCAAGTCGGTTCACAATTAAGAGCCGGGAATGGGTTTGGAATTTTTAACAGTCAGCAGTTGTCTCTCCGGGCCGGTTTTTCGAGAGCCATCCTTCGGTGACGTAGCTTAAAAAACAGTAATTACCATCAACGGAATAATTTTTAATTAATTACCCTCCAAACACCTGACACTGGATGAATTGTCCCCCACGACGGTAATAGACATTATTTTATCAGTTTAAAACCGTTATGGCATCTTCCACCTTTTTTCGATAGC</canonical>
            <polymorphic>ATGGGTCGAGAGACGCATGTGGGCGGAGTCTAAACTCATGATCAAAAATCGTGTGTTTCCGTCAGTTTGTGCTAAACTCTGAGATTGAAGCATTGACAGAAAGTTGACAAAACATTTCTTTATCAATGAAGACAGCGCCTTGAGGAACCTTTATTGCTCAAAGTTCTTCTGTGGAGGAACAAAACTTTAAGCCAGTATATCTCGGTCTCTGTACAAGATATCAAAAACAGATCAACTAACAAAATACGTTTGACATTATAATGAACACTTTATCAATAAGCCACTTTTAAATATCTTTCTGTTCTTTTAAAGATATCGGAAGAGTGCCAAGGAAAAATGGAAGAATCGACACTATTTTTTTTGTGGGATTTGGTGATTTAAAATAGTAACAAAATTAAAAAATGAAAAAACAAAACTTTTTTATTATCCGATTCAAATAATGCTAAAAATTTGAATTAATTCCTCTGGATCATTTCCCCATCATTTTTTCCTCTTGAGCWCCACCAGAAGTTCCCAGTTCCAACTCTTTGATCTGTAAAAACAACAGTGTTTTCTCATTATTATCCGTTTTATCAAAATATTACTTTTCGAGAATGTCGACTTTCTTTTTCAGAAGCGCATTTTCGGCTCTTTAGTCTGATCGTTGGAGTGACAATTCGTTTCCAATTCGTCCCTCCTAAAAATAAGAGAAATGAATTAAGGTGAAAATAGTTCAGTAACCTTACTTTACGAAAGGACCCTCCTTCAAGTCGGTTCACAATTAAGAGCCGGGAATGGGTTTGGAATTTTTAACAGTCAGCAGTTGTCTCTCCGGGCCGGTTTTTCGAGAGCCATCCTTCGGTGACGTAGCTTAAAAAACAGTAATTACCATCAACGGAATAATTTTTAATTAATTACCCTCCAAACACCTGACACTGGATGAATTGTCCCCCACGACGGTAATAGACATTATTTTATCAGTTTAAAACCGTTATGGCATCTTCCACCTTTTTTCGATAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>498 351 151</canonical_bands>
                <polymorphic_bands>849 151</polymorphic_bands>
            </assay>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>218 191 151 140 129 89 48 19 15</canonical_bands>
                <polymorphic_bands>347 191 151 140 89 48 19 15</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGGAAGAATCGACACTAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGATAAAACGGATAATAATGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGGAAGAATCGACACTATTTTTTTTGTGGGATTTGGTGATTTAAAATAGTAACAAAATTAAAAAATGAAAAAACAAAACTTTTTTATTATCCGATTCAAATAATGCTAAAAATTTGAATTAATTCCTCTGGATCATTTCCCCATCATTTTTTCCTCTTGAGCTCCACCAGAAGTTCCCAGTTCCAACTCTTTGATCTGTAAAAACAACAGTGTTTTCTCATTATTATCCGTTTTATCAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGGAAGAATCGACACTATTTTTTTTGTGGGATTTGGTGATTTAAAATAGTAACAAAATTAAAAAATGAAAAAACAAAACTTTTTTATTATCCGATTCAAATAATGCTAAAAATTTGAATTAATTCCTCTGGATCATTTCCCCATCATTTTTTCCTCTTGAGCWCCACCAGAAGTTCCCAGTTCCAACTCTTTGATCTGTAAAAACAACAGTGTTTTCTCATTATTATCCGTTTTATCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26613</snp_id>
        <super_contig>c002501028.Contig1</super_contig>
        <contig_pos>6784</contig_pos>
        <strand>+</strand>
        <context>AGTTCTGGAT[A/C]AATGTGACAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGGGTCGAGGGCACATGTGGGCGGAGTCTATAGTATAGAAGTTCTGGAT</left_flank>
        <right_flank>AATGTGACAGGATAGAATCATGAATAAGCAATCGGAACTCTATGTATTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACAACTTTTTCTATTAATTCCATTTTGATGGGATATAACGTTTTTTAGCAAGAAGGTGCCAAAAATTAGCACTGAAATTAGATTTTTTCCAGTTCAAAATCGTTGATCTCGCTTCGTTGGATATTCATTTAAAAAAAGTTATCAATTACAAAAATGAAGCTCTATTTTTGCTTATTATATTCTAGAATTTTCAGAGAAATCAAACAATTTTGGTCTGCTTTTTAGGGCATCGAAAATGAGGACTCCAAAACCACTCACCATTTTGAATATCCGCGAACTAAATAAAATTTCAGAATAAATATTTATAGAATTTAAATAAAAATCAAGAATCGTATGGCCTTCATGCAGAAAGTGGCCTGTAGATGTCCTAAAGGGACATCAGAAATAATGTGAATAGAGAACTAGGGCGCTCTTTTATACCCCTTTTTTTTGGTAGGCTCCGCCCACATGGGTCGAGGGCACATGTGGGCGGAGTCTATAGTATAGAAGTTCTGGATAAATGTGACAGGATAGAATCATGAATAAGCAATCGGAACTCTATGTATTGGCGAGAGAAGAATGTGGCAGTTTTTTGACAGACTATGCAGACTATGACAGACTATGTAACTATGCATAAAAAAAAACCGTTTTCTACATACCGTAAAACCTCTAATAGAACGACACCAGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGTGAAAGATATCAAAAAAGTGGTTAACTAGTAAAATNNNNNNNNNNNNAAAATTTGGAATCAAAAAATAGACGGGCATCATCTCGCTGCTATTTCGAATCATCTGGGAAAATTGGAAAATTTTCGGTCTACCGGGGACTTCGCTAGGGTCGTGGAACCGGGAACAAACGGACACACAGACAGAATTTGGTGATTGTAAAGATTCCCTCTCTCGCCACCAGAGTTTGAAGTGCTTATTCATGATTCAGGTGTCCCTCGACCCACCGGGTGTCGTTCTATTAGAGGTTTTACGGTATAT</canonical>
            <polymorphic>TGACAACTTTTTCTATTAATTCCATTTTGATGGGATATAACGTTTTTTAGCAAGAAGGTGCCAAAAATTAGCACTGAAATTAGATTTTTTCCAGTTCAAAATCGTTGATCTCGCTTCGTTGGATATTCATTTAAAAAAAGTTATCAATTACAAAAATGAAGCTCTATTTTTGCTTATTATATTCTAGAATTTTCAGAGAAATCAAACAATTTTGGTCTGCTTTTTAGGGCATCGAAAATGAGGACTCCAAAACCACTCACCATTTTGAATATCCGCGAACTAAATAAAATTTCAGAATAAATATTTATAGAATTTAAATAAAAATCAAGAATCGTATGGCCTTCATGCAGAAAGTGGCCTGTAGATGTCCTAAAGGGACATCAGAAATAATGTGAATAGAGAACTAGGGCGCTCTTTTATACCCCTTTTTTTTGGTAGGCTCCGCCCACATGGGTCGAGGGCACATGTGGGCGGAGTCTATAGTATAGAAGTTCTGGATMAATGTGACAGGATAGAATCATGAATAAGCAATCGGAACTCTATGTATTGGCGAGAGAAGAATGTGGCAGTTTTTTGACAGACTATGCAGACTATGACAGACTATGTAACTATGCATAAAAAAAAACCGTTTTCTACATACCGTAAAACCTCTAATAGAACGACACCAGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGTGAAAGATATCAAAAAAGTGGTTAACTAGTAAAATNNNNNNNNNNNNAAAATTTGGAATCAAAAAATAGACGGGCATCATCTCGCTGCTATTTCGAATCATCTGGGAAAATTGGAAAATTTTCGGTCTACCGGGGACTTCGCTAGGGTCGTGGAACCGGGAACAAACGGACACACAGACAGAATTTGGTGATTGTAAAGATTCCCTCTCTCGCCACCAGAGTTTGAAGTGCTTATTCATGATTCAGGTGTCCCTCGACCCACCGGGTGTCGTTCTATTAGAGGTTTTACGGTATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAGTGGCCTGTAGATGTC</pcr_primer_p1>
		<pcr_primer_p2>TCATAGTCTGCATAGTCTGTCAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGAAAGTGGCCTGTAGATGTCCTAAAGGGACATCAGAAATAATGTGAATAGAGAACTAGGGCGCTCTTTTATACCCCTTTTTTTTGGTAGGCTCCGCCCACATGGGTCGAGGGCACATGTGGGCGGAGTCTATAGTATAGAAGTTCTGGATAAATGTGACAGGATAGAATCATGAATAAGCAATCGGAACTCTATGTATTGGCGAGAGAAGAATGTGGCAGTTTTTTGACAGACTATGCAGACTATGA</canonical_amplicon>
		<polymorphic_amplicon>AGAAAGTGGCCTGTAGATGTCCTAAAGGGACATCAGAAATAATGTGAATAGAGAACTAGGGCGCTCTTTTATACCCCTTTTTTTTGGTAGGCTCCGCCCACATGGGTCGAGGGCACATGTGGGCGGAGTCTATAGTATAGAAGTTCTGGATMAATGTGACAGGATAGAATCATGAATAAGCAATCGGAACTCTATGTATTGGCGAGAGAAGAATGTGGCAGTTTTTTGACAGACTATGCAGACTATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26614</snp_id>
        <super_contig>c002601153.Contig2</super_contig>
        <contig_pos>10627</contig_pos>
        <strand>+</strand>
        <context>gtACTCATAT[C/T]CAATCTTCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCTCTTTTGAGGACCGATAGGATTGAGCTCAAATTACAGTACTCATAT</left_flank>
        <right_flank>CAATCTTCCAGAGCAATCCCAGCACGAACAATGTTGGGTGTGAACTCTCT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTTGGGAAGCTTTCTTTTTTTTATATTGGGTTTCAGTTAGCCTTCCAACTTGCTAAACTTTTTGTACGGCCTAACAACCTAGACCGTACTATGGTTACTGTATTCGAAGGGGGGTGCAACCGTTTTACGATCCTGAAAGTACAGTAACCGTAACTCGTGCCGCGCTTATTTATGCCGTTGCTCAACTAAATTCTCGACCTCGTAGCTCAAACCACGACACATGTAACGACTCCTTTGGGTAAATGAAACACACAAATTTCAACTTCCGAATTATTTGGCCCATTTGAAACAAAAAATTTCTAGGTTCCAAAAGCTTTGACATTCGACAGTGCAAGGTTCTATTTGAGCTCAATTATCTCGGTTCCTGTGAGAGATATCAAAAATATGTCAACTTAAAAAACTTTCATCATAATATCATCAATATTTTATCAGTTAGCCACTTTCCAATCTCTTTTGAGGACCGATAGGATTGAGCTCAAATTACAGTACTCATATCCAATCTTCCAGAGCAATCCCAGCACGAACAATGTTGGGTGTGAACTCTCTTCTTGCGATGACATTCCAATTTGGAAACATCATTCGAAACCTGCCACGTGTCTCGTATGTGAAAGCCATCGATGTTTGGATGCTCTCCGGAATGCTATTCATTTTCTTATCACTTTTGGAGTTGGCAGTCGTTGGATTCATGTCCCGGAATGAGGGTTTACCTCCAAAAGTATGTTTTGAAAAAAAATATTACCAATGGACCAAAAATTTTCAATAATTCTTCCATGCTTCACGTTTCTAGCATTTCCAAGGACCGAAATATAGCGATTTGAAGTGTGGGAGATTAGAGACGCAGAGAACGAGATACTCTCGCTGTCTGCGTCTCTCCGAAGTTCTGCCTAGTTGAAAATCGACTTTTAAATAAGTTATGGAAATGACTATTGGATCGCTGTGATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACAGAAGGTC</canonical>
            <polymorphic>AAATTTTGGGAAGCTTTCTTTTTTTTATATTGGGTTTCAGTTAGCCTTCCAACTTGCTAAACTTTTTGTACGGCCTAACAACCTAGACCGTACTATGGTTACTGTATTCGAAGGGGGGTGCAACCGTTTTACGATCCTGAAAGTACAGTAACCGTAACTCGTGCCGCGCTTATTTATGCCGTTGCTCAACTAAATTCTCGACCTCGTAGCTCAAACCACGACACATGTAACGACTCCTTTGGGTAAATGAAACACACAAATTTCAACTTCCGAATTATTTGGCCCATTTGAAACAAAAAATTTCTAGGTTCCAAAAGCTTTGACATTCGACAGTGCAAGGTTCTATTTGAGCTCAATTATCTCGGTTCCTGTGAGAGATATCAAAAATATGTCAACTTAAAAAACTTTCATCATAATATCATCAATATTTTATCAGTTAGCCACTTTCCAATCTCTTTTGAGGACCGATAGGATTGAGCTCAAATTACAGTACTCATATYCAATCTTCCAGAGCAATCCCAGCACGAACAATGTTGGGTGTGAACTCTCTTCTTGCGATGACATTCCAATTTGGAAACATCATTCGAAACCTGCCACGTGTCTCGTATGTGAAAGCCATCGATGTTTGGATGCTCTCCGGAATGCTATTCATTTTCTTATCACTTTTGGAGTTGGCAGTCGTTGGATTCATGTCCCGGAATGAGGGTTTACCTCCAAAAGTATGTTTTGAAAAAAAATATTACCAATGGACCAAAAATTTTCAATAATTCTTCCATGCTTCACGTTTCTAGCATTTCCAAGGACCGAAATATAGCGATTTGAAGTGTGGGAGATTAGAGACGCAGAGAACGAGATACTCTCGCTGTCTGCGTCTCTCCGAAGTTCTGCCTAGTTGAAAATCGACTTTTAAATAAGTTATGGAAATGACTATTGGATCGCTGTGATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACAGAAGGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGGTTCCAAAAGCTTTGAC</pcr_primer_p1>
		<pcr_primer_p2>AAGAGAGTTCACACCCAACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTAGGTTCCAAAAGCTTTGACATTCGACAGTGCAAGGTTCTATTTGAGCTCAATTATCTCGGTTCCTGTGAGAGATATCAAAAATATGTCAACTTAAAAAACTTTCATCATAATATCATCAATATTTTATCAGTTAGCCACTTTCCAATCTCTTTTGAGGACCGATAGGATTGAGCTCAAATTACAGTACTCATATCCAATCTTCCAGAGCAATCCCAGCACGAACAATGTTGGGTGTGAACTCTCTT</canonical_amplicon>
		<polymorphic_amplicon>CTAGGTTCCAAAAGCTTTGACATTCGACAGTGCAAGGTTCTATTTGAGCTCAATTATCTCGGTTCCTGTGAGAGATATCAAAAATATGTCAACTTAAAAAACTTTCATCATAATATCATCAATATTTTATCAGTTAGCCACTTTCCAATCTCTTTTGAGGACCGATAGGATTGAGCTCAAATTACAGTACTCATATYCAATCTTCCAGAGCAATCCCAGCACGAACAATGTTGGGTGTGAACTCTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26615</snp_id>
        <super_contig>c002601153.Contig2</super_contig>
        <contig_pos>10843</contig_pos>
        <strand>+</strand>
        <context>GTTTACCTCC[A/G]AAAGTATGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGGAGTTGGCAGTCGTTGGATTCATGTCCCGGAATGAGGGTTTACCTCC</left_flank>
        <right_flank>AAAGTATGTTTTGAAAAAAAATATTACCAATGGACCAAAAATTTTCAATA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACGACACATGTAACGACTCCTTTGGGTAAATGAAACACACAAATTTCAACTTCCGAATTATTTGGCCCATTTGAAACAAAAAATTTCTAGGTTCCAAAAGCTTTGACATTCGACAGTGCAAGGTTCTATTTGAGCTCAATTATCTCGGTTCCTGTGAGAGATATCAAAAATATGTCAACTTAAAAAACTTTCATCATAATATCATCAATATTTTATCAGTTAGCCACTTTCCAATCTCTTTTGAGGACCGATAGGATTGAGCTCAAATTACAGTACTCATATCCAATCTTCCAGAGCAATCCCAGCACGAACAATGTTGGGTGTGAACTCTCTTCTTGCGATGACATTCCAATTTGGAAACATCATTCGAAACCTGCCACGTGTCTCGTATGTGAAAGCCATCGATGTTTGGATGCTCTCCGGAATGCTATTCATTTTCTTATCACTTTTGGAGTTGGCAGTCGTTGGATTCATGTCCCGGAATGAGGGTTTACCTCCAAAAGTATGTTTTGAAAAAAAATATTACCAATGGACCAAAAATTTTCAATAATTCTTCCATGCTTCACGTTTCTAGCATTTCCAAGGACCGAAATATAGCGATTTGAAGTGTGGGAGATTAGAGACGCAGAGAACGAGATACTCTCGCTGTCTGCGTCTCTCCGAAGTTCTGCCTAGTTGAAAATCGACTTTTAAATAAGTTATGGAAATGACTATTGGATCGCTGTGATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACAGAAGGTCCTTTTTTTGACCCAATTTAACTCGTTTTCTGTGAATGATATCAAAAAGTAGTCAACTGAAAAATTGTTTGAGATATTATAACCAATACTTTGTCCGTAGACAACTTCTTGGCATCTTTCACAGGAGCCGAGGTAACTCGGGTCAAAGTAGGCTAGTCCTTCTATTATACGTATCAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCT</canonical>
            <polymorphic>CACGACACATGTAACGACTCCTTTGGGTAAATGAAACACACAAATTTCAACTTCCGAATTATTTGGCCCATTTGAAACAAAAAATTTCTAGGTTCCAAAAGCTTTGACATTCGACAGTGCAAGGTTCTATTTGAGCTCAATTATCTCGGTTCCTGTGAGAGATATCAAAAATATGTCAACTTAAAAAACTTTCATCATAATATCATCAATATTTTATCAGTTAGCCACTTTCCAATCTCTTTTGAGGACCGATAGGATTGAGCTCAAATTACAGTACTCATATCCAATCTTCCAGAGCAATCCCAGCACGAACAATGTTGGGTGTGAACTCTCTTCTTGCGATGACATTCCAATTTGGAAACATCATTCGAAACCTGCCACGTGTCTCGTATGTGAAAGCCATCGATGTTTGGATGCTCTCCGGAATGCTATTCATTTTCTTATCACTTTTGGAGTTGGCAGTCGTTGGATTCATGTCCCGGAATGAGGGTTTACCTCCRAAAGTATGTTTTGAAAAAAAATATTACCAATGGACCAAAAATTTTCAATAATTCTTCCATGCTTCACGTTTCTAGCATTTCCAAGGACCGAAATATAGCGATTTGAAGTGTGGGAGATTAGAGACGCAGAGAACGAGATACTCTCGCTGTCTGCGTCTCTCCGAAGTTCTGCCTAGTTGAAAATCGACTTTTAAATAAGTTATGGAAATGACTATTGGATCGCTGTGATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACAGAAGGTCCTTTTTTTGACCCAATTTAACTCGTTTTCTGTGAATGATATCAAAAAGTAGTCAACTGAAAAATTGTTTGAGATATTATAACCAATACTTTGTCCGTAGACAACTTCTTGGCATCTTTCACAGGAGCCGAGGTAACTCGGGTCAAAGTAGGCTAGTCCTTCTATTATACGTATCAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTTATCACTTTTGGAGTTG</pcr_primer_p1>
		<pcr_primer_p2>GATTTTCAACTAGGCAGAACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTTATCACTTTTGGAGTTGGCAGTCGTTGGATTCATGTCCCGGAATGAGGGTTTACCTCCAAAAGTATGTTTTGAAAAAAAATATTACCAATGGACCAAAAATTTTCAATAATTCTTCCATGCTTCACGTTTCTAGCATTTCCAAGGACCGAAATATAGCGATTTGAAGTGTGGGAGATTAGAGACGCAGAGAACGAGATACTCTCGCTGTCTGCGTCTCTCCGAAGTTCTGCCTAGTTGAAAATC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTTATCACTTTTGGAGTTGGCAGTCGTTGGATTCATGTCCCGGAATGAGGGTTTACCTCCRAAAGTATGTTTTGAAAAAAAATATTACCAATGGACCAAAAATTTTCAATAATTCTTCCATGCTTCACGTTTCTAGCATTTCCAAGGACCGAAATATAGCGATTTGAAGTGTGGGAGATTAGAGACGCAGAGAACGAGATACTCTCGCTGTCTGCGTCTCTCCGAAGTTCTGCCTAGTTGAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26616</snp_id>
        <super_contig>c002601153.Contig2</super_contig>
        <contig_pos>10964</contig_pos>
        <strand>+</strand>
        <context>tgggagatta[C/G]agacgcagag</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCTAGCATTTCCAAGGACCGAAATATAGCGATTTGAAGTGTGGGAGATTA</left_flank>
        <right_flank>AGACGCAGAGAACGAGATACTCTCGCTGTCTGCGTCTCTCCGAAGTTCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTTCTATTTGAGCTCAATTATCTCGGTTCCTGTGAGAGATATCAAAAATATGTCAACTTAAAAAACTTTCATCATAATATCATCAATATTTTATCAGTTAGCCACTTTCCAATCTCTTTTGAGGACCGATAGGATTGAGCTCAAATTACAGTACTCATATCCAATCTTCCAGAGCAATCCCAGCACGAACAATGTTGGGTGTGAACTCTCTTCTTGCGATGACATTCCAATTTGGAAACATCATTCGAAACCTGCCACGTGTCTCGTATGTGAAAGCCATCGATGTTTGGATGCTCTCCGGAATGCTATTCATTTTCTTATCACTTTTGGAGTTGGCAGTCGTTGGATTCATGTCCCGGAATGAGGGTTTACCTCCAAAAGTATGTTTTGAAAAAAAATATTACCAATGGACCAAAAATTTTCAATAATTCTTCCATGCTTCACGTTTCTAGCATTTCCAAGGACCGAAATATAGCGATTTGAAGTGTGGGAGATTAGAGACGCAGAGAACGAGATACTCTCGCTGTCTGCGTCTCTCCGAAGTTCTGCCTAGTTGAAAATCGACTTTTAAATAAGTTATGGAAATGACTATTGGATCGCTGTGATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACAGAAGGTCCTTTTTTTGACCCAATTTAACTCGTTTTCTGTGAATGATATCAAAAAGTAGTCAACTGAAAAATTGTTTGAGATATTATAACCAATACTTTGTCCGTAGACAACTTCTTGGCATCTTTCACAGGAGCCGAGGTAACTCGGGTCAAAGTAGGCTAGTCCTTCTATTATACGTATCAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCTCTTTACCGTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAAGAAGATGACGAGGGATTCTCGTGGAAGAGT</canonical>
            <polymorphic>AGGTTCTATTTGAGCTCAATTATCTCGGTTCCTGTGAGAGATATCAAAAATATGTCAACTTAAAAAACTTTCATCATAATATCATCAATATTTTATCAGTTAGCCACTTTCCAATCTCTTTTGAGGACCGATAGGATTGAGCTCAAATTACAGTACTCATATCCAATCTTCCAGAGCAATCCCAGCACGAACAATGTTGGGTGTGAACTCTCTTCTTGCGATGACATTCCAATTTGGAAACATCATTCGAAACCTGCCACGTGTCTCGTATGTGAAAGCCATCGATGTTTGGATGCTCTCCGGAATGCTATTCATTTTCTTATCACTTTTGGAGTTGGCAGTCGTTGGATTCATGTCCCGGAATGAGGGTTTACCTCCAAAAGTATGTTTTGAAAAAAAATATTACCAATGGACCAAAAATTTTCAATAATTCTTCCATGCTTCACGTTTCTAGCATTTCCAAGGACCGAAATATAGCGATTTGAAGTGTGGGAGATTASAGACGCAGAGAACGAGATACTCTCGCTGTCTGCGTCTCTCCGAAGTTCTGCCTAGTTGAAAATCGACTTTTAAATAAGTTATGGAAATGACTATTGGATCGCTGTGATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACAGAAGGTCCTTTTTTTGACCCAATTTAACTCGTTTTCTGTGAATGATATCAAAAAGTAGTCAACTGAAAAATTGTTTGAGATATTATAACCAATACTTTGTCCGTAGACAACTTCTTGGCATCTTTCACAGGAGCCGAGGTAACTCGGGTCAAAGTAGGCTAGTCCTTCTATTATACGTATCAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCTCTTTACCGTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAAGAAGATGACGAGGGATTCTCGTGGAAGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTTATCACTTTTGGAGTTG</pcr_primer_p1>
		<pcr_primer_p2>GATTTTCAACTAGGCAGAACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTTATCACTTTTGGAGTTGGCAGTCGTTGGATTCATGTCCCGGAATGAGGGTTTACCTCCAAAAGTATGTTTTGAAAAAAAATATTACCAATGGACCAAAAATTTTCAATAATTCTTCCATGCTTCACGTTTCTAGCATTTCCAAGGACCGAAATATAGCGATTTGAAGTGTGGGAGATTAGAGACGCAGAGAACGAGATACTCTCGCTGTCTGCGTCTCTCCGAAGTTCTGCCTAGTTGAAAATC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTTATCACTTTTGGAGTTGGCAGTCGTTGGATTCATGTCCCGGAATGAGGGTTTACCTCCAAAAGTATGTTTTGAAAAAAAATATTACCAATGGACCAAAAATTTTCAATAATTCTTCCATGCTTCACGTTTCTAGCATTTCCAAGGACCGAAATATAGCGATTTGAAGTGTGGGAGATTASAGACGCAGAGAACGAGATACTCTCGCTGTCTGCGTCTCTCCGAAGTTCTGCCTAGTTGAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26617</snp_id>
        <super_contig>c002601153.Contig2</super_contig>
        <contig_pos>11070</contig_pos>
        <strand>+</strand>
        <context>GGATCGCTGT[C/G]ATTTTTTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTGAAAATCGACTTTTAAATAAGTTATGGAAATGACTATTGGATCGCTGT</left_flank>
        <right_flank>ATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTCCAATCTCTTTTGAGGACCGATAGGATTGAGCTCAAATTACAGTACTCATATCCAATCTTCCAGAGCAATCCCAGCACGAACAATGTTGGGTGTGAACTCTCTTCTTGCGATGACATTCCAATTTGGAAACATCATTCGAAACCTGCCACGTGTCTCGTATGTGAAAGCCATCGATGTTTGGATGCTCTCCGGAATGCTATTCATTTTCTTATCACTTTTGGAGTTGGCAGTCGTTGGATTCATGTCCCGGAATGAGGGTTTACCTCCAAAAGTATGTTTTGAAAAAAAATATTACCAATGGACCAAAAATTTTCAATAATTCTTCCATGCTTCACGTTTCTAGCATTTCCAAGGACCGAAATATAGCGATTTGAAGTGTGGGAGATTAGAGACGCAGAGAACGAGATACTCTCGCTGTCTGCGTCTCTCCGAAGTTCTGCCTAGTTGAAAATCGACTTTTAAATAAGTTATGGAAATGACTATTGGATCGCTGTGATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACAGAAGGTCCTTTTTTTGACCCAATTTAACTCGTTTTCTGTGAATGATATCAAAAAGTAGTCAACTGAAAAATTGTTTGAGATATTATAACCAATACTTTGTCCGTAGACAACTTCTTGGCATCTTTCACAGGAGCCGAGGTAACTCGGGTCAAAGTAGGCTAGTCCTTCTATTATACGTATCAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCTCTTTACCGTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAAGAAGATGACGAGGGATTCTCGTGGAAGAGTATGCAGACAAGCCCTCATTTAGAATTAAGACAGGTAAAGAGAAAAATGGACCTGTCTAAAAAAAGAAAAGAAAACTTCCAGTTTTGGGTGGACAAACGAGTCAATT</canonical>
            <polymorphic>CTTTCCAATCTCTTTTGAGGACCGATAGGATTGAGCTCAAATTACAGTACTCATATCCAATCTTCCAGAGCAATCCCAGCACGAACAATGTTGGGTGTGAACTCTCTTCTTGCGATGACATTCCAATTTGGAAACATCATTCGAAACCTGCCACGTGTCTCGTATGTGAAAGCCATCGATGTTTGGATGCTCTCCGGAATGCTATTCATTTTCTTATCACTTTTGGAGTTGGCAGTCGTTGGATTCATGTCCCGGAATGAGGGTTTACCTCCAAAAGTATGTTTTGAAAAAAAATATTACCAATGGACCAAAAATTTTCAATAATTCTTCCATGCTTCACGTTTCTAGCATTTCCAAGGACCGAAATATAGCGATTTGAAGTGTGGGAGATTAGAGACGCAGAGAACGAGATACTCTCGCTGTCTGCGTCTCTCCGAAGTTCTGCCTAGTTGAAAATCGACTTTTAAATAAGTTATGGAAATGACTATTGGATCGCTGTSATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACAGAAGGTCCTTTTTTTGACCCAATTTAACTCGTTTTCTGTGAATGATATCAAAAAGTAGTCAACTGAAAAATTGTTTGAGATATTATAACCAATACTTTGTCCGTAGACAACTTCTTGGCATCTTTCACAGGAGCCGAGGTAACTCGGGTCAAAGTAGGCTAGTCCTTCTATTATACGTATCAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCTCTTTACCGTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAAGAAGATGACGAGGGATTCTCGTGGAAGAGTATGCAGACAAGCCCTCATTTAGAATTAAGACAGGTAAAGAGAAAAATGGACCTGTCTAAAAAAAGAAAAGAAAACTTCCAGTTTTGGGTGGACAAACGAGTCAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>130 120 115 97 87 81 80 54 52 51 44 38 16 16 11 4 2 2</canonical_bands>
                <polymorphic_bands>153 130 120 97 87 81 80 54 52 51 44 16 16 11 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGTTCTGCCTAGTTGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CAATTATTTGTCTGCTTCAGATT</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>GAAGTTCTGCCTAGTTGAAAATCGACTTTTAAATAAGTTATGGAAATGACTATTGGATCGCTGTGATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACAGAAGGTCCTTTTTTTGACCCAATTTAACTCGTTTTCTGTGAATGATATCAAAAAGTAGTCAACTGAAAAATTGTTTGAGATATTATAACCAATACTTTGTCCGTAGACAACTTCTTGGCATCTTTCACAGGAGCCGAGGTAACTCGGGTCAAAGTAGGCTAGTCCTTCTATTATACGTATCAAAATCTGAAGCAGACAAATAATTG</canonical_amplicon>
		<polymorphic_amplicon>GAAGTTCTGCCTAGTTGAAAATCGACTTTTAAATAAGTTATGGAAATGACTATTGGATCGCTGTSATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACAGAAGGTCCTTTTTTTGACCCAATTTAACTCGTTTTCTGTGAATGATATCAAAAAGTAGTCAACTGAAAAATTGTTTGAGATATTATAACCAATACTTTGTCCGTAGACAACTTCTTGGCATCTTTCACAGGAGCCGAGGTAACTCGGGTCAAAGTAGGCTAGTCCTTCTATTATACGTATCAAAATCTGAAGCAGACAAATAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26618</snp_id>
        <super_contig>c002601153.Contig2</super_contig>
        <contig_pos>11239</contig_pos>
        <strand></strand>
        <context>aacttcttgg[C/T]atctttcaca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTGTTTGAGATATTATAACCAATACTTTGTCCGTAGACAACTTCTTGG</left_flank>
        <right_flank>ATCTTTCACAGGAGCCGAGGTAACTCGGGTCAAAGTAGGCTAGTCCTTCT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCCATCGATGTTTGGATGCTCTCCGGAATGCTATTCATTTTCTTATCACTTTTGGAGTTGGCAGTCGTTGGATTCATGTCCCGGAATGAGGGTTTACCTCCAAAAGTATGTTTTGAAAAAAAATATTACCAATGGACCAAAAATTTTCAATAATTCTTCCATGCTTCACGTTTCTAGCATTTCCAAGGACCGAAATATAGCGATTTGAAGTGTGGGAGATTAGAGACGCAGAGAACGAGATACTCTCGCTGTCTGCGTCTCTCCGAAGTTCTGCCTAGTTGAAAATCGACTTTTAAATAAGTTATGGAAATGACTATTGGATCGCTGTGATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACAGAAGGTCCTTTTTTTGACCCAATTTAACTCGTTTTCTGTGAATGATATCAAAAAGTAGTCAACTGAAAAATTGTTTGAGATATTATAACCAATACTTTGTCCGTAGACAACTTCTTGGCATCTTTCACAGGAGCCGAGGTAACTCGGGTCAAAGTAGGCTAGTCCTTCTATTATACGTATCAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCTCTTTACCGTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAAGAAGATGACGAGGGATTCTCGTGGAAGAGTATGCAGACAAGCCCTCATTTAGAATTAAGACAGGTAAAGAGAAAAATGGACCTGTCTAAAAAAAGAAAAGAAAACTTCCAGTTTTGGGTGGACAAACGAGTCAATTCGTTGAGGAATGATAGTGGAGTACCTCCAGTGGAAGATTATGTGAGTTCTCTTTATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC</canonical>
            <polymorphic>AAGCCATCGATGTTTGGATGCTCTCCGGAATGCTATTCATTTTCTTATCACTTTTGGAGTTGGCAGTCGTTGGATTCATGTCCCGGAATGAGGGTTTACCTCCAAAAGTATGTTTTGAAAAAAAATATTACCAATGGACCAAAAATTTTCAATAATTCTTCCATGCTTCACGTTTCTAGCATTTCCAAGGACCGAAATATAGCGATTTGAAGTGTGGGAGATTAGAGACGCAGAGAACGAGATACTCTCGCTGTCTGCGTCTCTCCGAAGTTCTGCCTAGTTGAAAATCGACTTTTAAATAAGTTATGGAAATGACTATTGGATCGCTGTGATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACAGAAGGTCCTTTTTTTGACCCAATTTAACTCGTTTTCTGTGAATGATATCAAAAAGTAGTCAACTGAAAAATTGTTTGAGATATTATAACCAATACTTTGTCCGTAGACAACTTCTTGGYATCTTTCACAGGAGCCGAGGTAACTCGGGTCAAAGTAGGCTAGTCCTTCTATTATACGTATCAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCTCTTTACCGTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAAGAAGATGACGAGGGATTCTCGTGGAAGAGTATGCAGACAAGCCCTCATTTAGAATTAAGACAGGTAAAGAGAAAAATGGACCTGTCTAAAAAAAGAAAAGAAAACTTCCAGTTTTGGGTGGACAAACGAGTCAATTCGTTGAGGAATGATAGTGGAGTACCTCCAGTGGAAGATTATGTGAGTTCTCTTTATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGACTATTGGATCGCTGT</pcr_primer_p1>
		<pcr_primer_p2>TTGTCTGCTTCAGATTTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>AAATGACTATTGGATCGCTGTGATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACAGAAGGTCCTTTTTTTGACCCAATTTAACTCGTTTTCTGTGAATGATATCAAAAAGTAGTCAACTGAAAAATTGTTTGAGATATTATAACCAATACTTTGTCCGTAGACAACTTCTTGGCATCTTTCACAGGAGCCGAGGTAACTCGGGTCAAAGTAGGCTAGTCCTTCTATTATACGTATCAAAATCTGAAGCAGACAA</canonical_amplicon>
		<polymorphic_amplicon>AAATGACTATTGGATCGCTGTGATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACAGAAGGTCCTTTTTTTGACCCAATTTAACTCGTTTTCTGTGAATGATATCAAAAAGTAGTCAACTGAAAAATTGTTTGAGATATTATAACCAATACTTTGTCCGTAGACAACTTCTTGGYATCTTTCACAGGAGCCGAGGTAACTCGGGTCAAAGTAGGCTAGTCCTTCTATTATACGTATCAAAATCTGAAGCAGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26619</snp_id>
        <super_contig>c002601153.Contig2</super_contig>
        <contig_pos>11296</contig_pos>
        <strand></strand>
        <context>ttctattata[C/T]gtATCAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACAGGAGCCGAGGTAACTCGGGTCAAAGTAGGCTAGTCCTTCTATTATA</left_flank>
        <right_flank>GTATCAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCTTAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTGGCAGTCGTTGGATTCATGTCCCGGAATGAGGGTTTACCTCCAAAAGTATGTTTTGAAAAAAAATATTACCAATGGACCAAAAATTTTCAATAATTCTTCCATGCTTCACGTTTCTAGCATTTCCAAGGACCGAAATATAGCGATTTGAAGTGTGGGAGATTAGAGACGCAGAGAACGAGATACTCTCGCTGTCTGCGTCTCTCCGAAGTTCTGCCTAGTTGAAAATCGACTTTTAAATAAGTTATGGAAATGACTATTGGATCGCTGTGATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACAGAAGGTCCTTTTTTTGACCCAATTTAACTCGTTTTCTGTGAATGATATCAAAAAGTAGTCAACTGAAAAATTGTTTGAGATATTATAACCAATACTTTGTCCGTAGACAACTTCTTGGCATCTTTCACAGGAGCCGAGGTAACTCGGGTCAAAGTAGGCTAGTCCTTCTATTATACGTATCAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCTCTTTACCGTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAAGAAGATGACGAGGGATTCTCGTGGAAGAGTATGCAGACAAGCCCTCATTTAGAATTAAGACAGGTAAAGAGAAAAATGGACCTGTCTAAAAAAAGAAAAGAAAACTTCCAGTTTTGGGTGGACAAACGAGTCAATTCGTTGAGGAATGATAGTGGAGTACCTCCAGTGGAAGATTATGTGAGTTCTCTTTATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTCTCTCTCTCTCTCGCTCGCTCACTCACTGACTATAACCCAATCAAA</canonical>
            <polymorphic>AGTTGGCAGTCGTTGGATTCATGTCCCGGAATGAGGGTTTACCTCCAAAAGTATGTTTTGAAAAAAAATATTACCAATGGACCAAAAATTTTCAATAATTCTTCCATGCTTCACGTTTCTAGCATTTCCAAGGACCGAAATATAGCGATTTGAAGTGTGGGAGATTAGAGACGCAGAGAACGAGATACTCTCGCTGTCTGCGTCTCTCCGAAGTTCTGCCTAGTTGAAAATCGACTTTTAAATAAGTTATGGAAATGACTATTGGATCGCTGTGATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACAGAAGGTCCTTTTTTTGACCCAATTTAACTCGTTTTCTGTGAATGATATCAAAAAGTAGTCAACTGAAAAATTGTTTGAGATATTATAACCAATACTTTGTCCGTAGACAACTTCTTGGCATCTTTCACAGGAGCCGAGGTAACTCGGGTCAAAGTAGGCTAGTCCTTCTATTATAYGTATCAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCTCTTTACCGTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAAGAAGATGACGAGGGATTCTCGTGGAAGAGTATGCAGACAAGCCCTCATTTAGAATTAAGACAGGTAAAGAGAAAAATGGACCTGTCTAAAAAAAGAAAAGAAAACTTCCAGTTTTGGGTGGACAAACGAGTCAATTCGTTGAGGAATGATAGTGGAGTACCTCCAGTGGAAGATTATGTGAGTTCTCTTTATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTCTCTCTCTCTCTCGCTCGCTCACTCACTGACTATAACCCAATCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TACGTA</site>
                <isoschizomers>
                    <enzyme>BstSNI</enzyme>
                    <enzyme>Eco105I</enzyme>
                    <enzyme>SnaBI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>501 386 113</canonical_bands>
                <polymorphic_bands>887 113</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGACTATTGGATCGCTGT</pcr_primer_p1>
		<pcr_primer_p2>AGCTTTAGTTTAACATCTCAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>AAATGACTATTGGATCGCTGTGATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACAGAAGGTCCTTTTTTTGACCCAATTTAACTCGTTTTCTGTGAATGATATCAAAAAGTAGTCAACTGAAAAATTGTTTGAGATATTATAACCAATACTTTGTCCGTAGACAACTTCTTGGCATCTTTCACAGGAGCCGAGGTAACTCGGGTCAAAGTAGGCTAGTCCTTCTATTATACGTATCAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCTTAAATTTTTGAGATGTTAAACTAAAGCT</canonical_amplicon>
		<polymorphic_amplicon>AAATGACTATTGGATCGCTGTGATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACAGAAGGTCCTTTTTTTGACCCAATTTAACTCGTTTTCTGTGAATGATATCAAAAAGTAGTCAACTGAAAAATTGTTTGAGATATTATAACCAATACTTTGTCCGTAGACAACTTCTTGGCATCTTTCACAGGAGCCGAGGTAACTCGGGTCAAAGTAGGCTAGTCCTTCTATTATAYGTATCAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCTTAAATTTTTGAGATGTTAAACTAAAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26620</snp_id>
        <super_contig>c002601153.Contig2</super_contig>
        <contig_pos>11339</contig_pos>
        <strand>+</strand>
        <context>GTTTCAAATA[G/T]ATCTTAAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATTATACGTATCAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATA</left_flank>
        <right_flank>ATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCTC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAAAAGTATGTTTTGAAAAAAAATATTACCAATGGACCAAAAATTTTCAATAATTCTTCCATGCTTCACGTTTCTAGCATTTCCAAGGACCGAAATATAGCGATTTGAAGTGTGGGAGATTAGAGACGCAGAGAACGAGATACTCTCGCTGTCTGCGTCTCTCCGAAGTTCTGCCTAGTTGAAAATCGACTTTTAAATAAGTTATGGAAATGACTATTGGATCGCTGTGATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACAGAAGGTCCTTTTTTTGACCCAATTTAACTCGTTTTCTGTGAATGATATCAAAAAGTAGTCAACTGAAAAATTGTTTGAGATATTATAACCAATACTTTGTCCGTAGACAACTTCTTGGCATCTTTCACAGGAGCCGAGGTAACTCGGGTCAAAGTAGGCTAGTCCTTCTATTATACGTATCAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCTCTTTACCGTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAAGAAGATGACGAGGGATTCTCGTGGAAGAGTATGCAGACAAGCCCTCATTTAGAATTAAGACAGGTAAAGAGAAAAATGGACCTGTCTAAAAAAAGAAAAGAAAACTTCCAGTTTTGGGTGGACAAACGAGTCAATTCGTTGAGGAATGATAGTGGAGTACCTCCAGTGGAAGATTATGTGAGTTCTCTTTATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTCTCTCTCTCTCTCGCTCGCTCACTCACTGACTATAACCCAATCAAATAATGTTTTTTCAAGAATTCAATACAGAAATGATTACTCTGTA</canonical>
            <polymorphic>TCCAAAAGTATGTTTTGAAAAAAAATATTACCAATGGACCAAAAATTTTCAATAATTCTTCCATGCTTCACGTTTCTAGCATTTCCAAGGACCGAAATATAGCGATTTGAAGTGTGGGAGATTAGAGACGCAGAGAACGAGATACTCTCGCTGTCTGCGTCTCTCCGAAGTTCTGCCTAGTTGAAAATCGACTTTTAAATAAGTTATGGAAATGACTATTGGATCGCTGTGATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACAGAAGGTCCTTTTTTTGACCCAATTTAACTCGTTTTCTGTGAATGATATCAAAAAGTAGTCAACTGAAAAATTGTTTGAGATATTATAACCAATACTTTGTCCGTAGACAACTTCTTGGCATCTTTCACAGGAGCCGAGGTAACTCGGGTCAAAGTAGGCTAGTCCTTCTATTATACGTATCAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAKATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCTCTTTACCGTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAAGAAGATGACGAGGGATTCTCGTGGAAGAGTATGCAGACAAGCCCTCATTTAGAATTAAGACAGGTAAAGAGAAAAATGGACCTGTCTAAAAAAAGAAAAGAAAACTTCCAGTTTTGGGTGGACAAACGAGTCAATTCGTTGAGGAATGATAGTGGAGTACCTCCAGTGGAAGATTATGTGAGTTCTCTTTATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTCTCTCTCTCTCTCGCTCGCTCACTCACTGACTATAACCCAATCAAATAATGTTTTTTCAAGAATTCAATACAGAAATGATTACTCTGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>501 278 221</canonical_bands>
                <polymorphic_bands>779 221</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGACTATTGGATCGCTGT</pcr_primer_p1>
		<pcr_primer_p2>TTCTTGTCGTTTTCGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>386</pcr_amplicon_size>
		<canonical_amplicon>AAATGACTATTGGATCGCTGTGATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACAGAAGGTCCTTTTTTTGACCCAATTTAACTCGTTTTCTGTGAATGATATCAAAAAGTAGTCAACTGAAAAATTGTTTGAGATATTATAACCAATACTTTGTCCGTAGACAACTTCTTGGCATCTTTCACAGGAGCCGAGGTAACTCGGGTCAAAGTAGGCTAGTCCTTCTATTATACGTATCAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCTCTTTACCGTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAA</canonical_amplicon>
		<polymorphic_amplicon>AAATGACTATTGGATCGCTGTGATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACAGAAGGTCCTTTTTTTGACCCAATTTAACTCGTTTTCTGTGAATGATATCAAAAAGTAGTCAACTGAAAAATTGTTTGAGATATTATAACCAATACTTTGTCCGTAGACAACTTCTTGGCATCTTTCACAGGAGCCGAGGTAACTCGGGTCAAAGTAGGCTAGTCCTTCTATTATACGTATCAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAKATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCTCTTTACCGTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26621</snp_id>
        <super_contig>c002601153.Contig2</super_contig>
        <contig_pos>11388</contig_pos>
        <strand>+</strand>
        <context>CTGAAGCTTC[A/T]CYTTACYGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTC</left_flank>
        <right_flank>CTTTACCGTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAAGAAG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATAATTCTTCCATGCTTCACGTTTCTAGCATTTCCAAGGACCGAAATATAGCGATTTGAAGTGTGGGAGATTAGAGACGCAGAGAACGAGATACTCTCGCTGTCTGCGTCTCTCCGAAGTTCTGCCTAGTTGAAAATCGACTTTTAAATAAGTTATGGAAATGACTATTGGATCGCTGTGATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACAGAAGGTCCTTTTTTTGACCCAATTTAACTCGTTTTCTGTGAATGATATCAAAAAGTAGTCAACTGAAAAATTGTTTGAGATATTATAACCAATACTTTGTCCGTAGACAACTTCTTGGCATCTTTCACAGGAGCCGAGGTAACTCGGGTCAAAGTAGGCTAGTCCTTCTATTATACGTATCAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCTCTTTACCGTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAAGAAGATGACGAGGGATTCTCGTGGAAGAGTATGCAGACAAGCCCTCATTTAGAATTAAGACAGGTAAAGAGAAAAATGGACCTGTCTAAAAAAAGAAAAGAAAACTTCCAGTTTTGGGTGGACAAACGAGTCAATTCGTTGAGGAATGATAGTGGAGTACCTCCAGTGGAAGATTATGTGAGTTCTCTTTATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTCTCTCTCTCTCTCGCTCGCTCACTCACTGACTATAACCCAATCAAATAATGTTTTTTCAAGAATTCAATACAGAAATGATTACTCTGTAACTGTAACTGTAATAATTTGCAGGCACCAATGGAACTTGAACAGCCGTA</canonical>
            <polymorphic>CAATAATTCTTCCATGCTTCACGTTTCTAGCATTTCCAAGGACCGAAATATAGCGATTTGAAGTGTGGGAGATTAGAGACGCAGAGAACGAGATACTCTCGCTGTCTGCGTCTCTCCGAAGTTCTGCCTAGTTGAAAATCGACTTTTAAATAAGTTATGGAAATGACTATTGGATCGCTGTGATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACAGAAGGTCCTTTTTTTGACCCAATTTAACTCGTTTTCTGTGAATGATATCAAAAAGTAGTCAACTGAAAAATTGTTTGAGATATTATAACCAATACTTTGTCCGTAGACAACTTCTTGGCATCTTTCACAGGAGCCGAGGTAACTCGGGTCAAAGTAGGCTAGTCCTTCTATTATACGTATCAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCWCTTTACCGTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAAGAAGATGACGAGGGATTCTCGTGGAAGAGTATGCAGACAAGCCCTCATTTAGAATTAAGACAGGTAAAGAGAAAAATGGACCTGTCTAAAAAAAGAAAAGAAAACTTCCAGTTTTGGGTGGACAAACGAGTCAATTCGTTGAGGAATGATAGTGGAGTACCTCCAGTGGAAGATTATGTGAGTTCTCTTTATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTCTCTCTCTCTCTCGCTCGCTCACTCACTGACTATAACCCAATCAAATAATGTTTTTTCAAGAATTCAATACAGAAATGATTACTCTGTAACTGTAACTGTAATAATTTGCAGGCACCAATGGAACTTGAACAGCCGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATCTGAAGCAGACAAATA</pcr_primer_p1>
		<pcr_primer_p2>AAACTGGAAGTTTTCTTTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCTCTTTACCGTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAAGAAGATGACGAGGGATTCTCGTGGAAGAGTATGCAGACAAGCCCTCATTTAGAATTAAGACAGGTAAAGAGAAAAATGGACCTGTCTAAAAAAAGAAAAGAAAACTTCCAGTTT</canonical_amplicon>
		<polymorphic_amplicon>CAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCWCTTTACCGTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAAGAAGATGACGAGGGATTCTCGTGGAAGAGTATGCAGACAAGCCCTCATTTAGAATTAAGACAGGTAAAGAGAAAAATGGACCTGTCTAAAAAAAGAAAAGAAAACTTCCAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26622</snp_id>
        <super_contig>c002601153.Contig2</super_contig>
        <contig_pos>11390</contig_pos>
        <strand>+</strand>
        <context>GAAGCTTCWC[C/T]TTACYGTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCTC</left_flank>
        <right_flank>TTACCGTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAAGAAGAT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAATTCTTCCATGCTTCACGTTTCTAGCATTTCCAAGGACCGAAATATAGCGATTTGAAGTGTGGGAGATTAGAGACGCAGAGAACGAGATACTCTCGCTGTCTGCGTCTCTCCGAAGTTCTGCCTAGTTGAAAATCGACTTTTAAATAAGTTATGGAAATGACTATTGGATCGCTGTGATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACAGAAGGTCCTTTTTTTGACCCAATTTAACTCGTTTTCTGTGAATGATATCAAAAAGTAGTCAACTGAAAAATTGTTTGAGATATTATAACCAATACTTTGTCCGTAGACAACTTCTTGGCATCTTTCACAGGAGCCGAGGTAACTCGGGTCAAAGTAGGCTAGTCCTTCTATTATACGTATCAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCTCTTTACCGTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAAGAAGATGACGAGGGATTCTCGTGGAAGAGTATGCAGACAAGCCCTCATTTAGAATTAAGACAGGTAAAGAGAAAAATGGACCTGTCTAAAAAAAGAAAAGAAAACTTCCAGTTTTGGGTGGACAAACGAGTCAATTCGTTGAGGAATGATAGTGGAGTACCTCCAGTGGAAGATTATGTGAGTTCTCTTTATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTCTCTCTCTCTCTCGCTCGCTCACTCACTGACTATAACCCAATCAAATAATGTTTTTTCAAGAATTCAATACAGAAATGATTACTCTGTAACTGTAACTGTAATAATTTGCAGGCACCAATGGAACTTGAACAGCCGTATC</canonical>
            <polymorphic>ATAATTCTTCCATGCTTCACGTTTCTAGCATTTCCAAGGACCGAAATATAGCGATTTGAAGTGTGGGAGATTAGAGACGCAGAGAACGAGATACTCTCGCTGTCTGCGTCTCTCCGAAGTTCTGCCTAGTTGAAAATCGACTTTTAAATAAGTTATGGAAATGACTATTGGATCGCTGTGATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACAGAAGGTCCTTTTTTTGACCCAATTTAACTCGTTTTCTGTGAATGATATCAAAAAGTAGTCAACTGAAAAATTGTTTGAGATATTATAACCAATACTTTGTCCGTAGACAACTTCTTGGCATCTTTCACAGGAGCCGAGGTAACTCGGGTCAAAGTAGGCTAGTCCTTCTATTATACGTATCAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCTCYTTACCGTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAAGAAGATGACGAGGGATTCTCGTGGAAGAGTATGCAGACAAGCCCTCATTTAGAATTAAGACAGGTAAAGAGAAAAATGGACCTGTCTAAAAAAAGAAAAGAAAACTTCCAGTTTTGGGTGGACAAACGAGTCAATTCGTTGAGGAATGATAGTGGAGTACCTCCAGTGGAAGATTATGTGAGTTCTCTTTATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTCTCTCTCTCTCTCGCTCGCTCACTCACTGACTATAACCCAATCAAATAATGTTTTTTCAAGAATTCAATACAGAAATGATTACTCTGTAACTGTAACTGTAATAATTTGCAGGCACCAATGGAACTTGAACAGCCGTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATCTGAAGCAGACAAATA</pcr_primer_p1>
		<pcr_primer_p2>AAACTGGAAGTTTTCTTTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCTCTTTACCGTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAAGAAGATGACGAGGGATTCTCGTGGAAGAGTATGCAGACAAGCCCTCATTTAGAATTAAGACAGGTAAAGAGAAAAATGGACCTGTCTAAAAAAAGAAAAGAAAACTTCCAGTTT</canonical_amplicon>
		<polymorphic_amplicon>CAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCTCYTTACCGTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAAGAAGATGACGAGGGATTCTCGTGGAAGAGTATGCAGACAAGCCCTCATTTAGAATTAAGACAGGTAAAGAGAAAAATGGACCTGTCTAAAAAAAGAAAAGAAAACTTCCAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26623</snp_id>
        <super_contig>c002601153.Contig2</super_contig>
        <contig_pos>11395</contig_pos>
        <strand>+</strand>
        <context>TTCWCYTTAC[C/T]GTTCGAAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCTCTTTAC</left_flank>
        <right_flank>GTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAAGAAGATGACGA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCCATGCTTCACGTTTCTAGCATTTCCAAGGACCGAAATATAGCGATTTGAAGTGTGGGAGATTAGAGACGCAGAGAACGAGATACTCTCGCTGTCTGCGTCTCTCCGAAGTTCTGCCTAGTTGAAAATCGACTTTTAAATAAGTTATGGAAATGACTATTGGATCGCTGTGATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACAGAAGGTCCTTTTTTTGACCCAATTTAACTCGTTTTCTGTGAATGATATCAAAAAGTAGTCAACTGAAAAATTGTTTGAGATATTATAACCAATACTTTGTCCGTAGACAACTTCTTGGCATCTTTCACAGGAGCCGAGGTAACTCGGGTCAAAGTAGGCTAGTCCTTCTATTATACGTATCAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCTCTTTACCGTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAAGAAGATGACGAGGGATTCTCGTGGAAGAGTATGCAGACAAGCCCTCATTTAGAATTAAGACAGGTAAAGAGAAAAATGGACCTGTCTAAAAAAAGAAAAGAAAACTTCCAGTTTTGGGTGGACAAACGAGTCAATTCGTTGAGGAATGATAGTGGAGTACCTCCAGTGGAAGATTATGTGAGTTCTCTTTATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTCTCTCTCTCTCTCGCTCGCTCACTCACTGACTATAACCCAATCAAATAATGTTTTTTCAAGAATTCAATACAGAAATGATTACTCTGTAACTGTAACTGTAATAATTTGCAGGCACCAATGGAACTTGAACAGCCGTATCAGAAT</canonical>
            <polymorphic>TCTTCCATGCTTCACGTTTCTAGCATTTCCAAGGACCGAAATATAGCGATTTGAAGTGTGGGAGATTAGAGACGCAGAGAACGAGATACTCTCGCTGTCTGCGTCTCTCCGAAGTTCTGCCTAGTTGAAAATCGACTTTTAAATAAGTTATGGAAATGACTATTGGATCGCTGTGATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACAGAAGGTCCTTTTTTTGACCCAATTTAACTCGTTTTCTGTGAATGATATCAAAAAGTAGTCAACTGAAAAATTGTTTGAGATATTATAACCAATACTTTGTCCGTAGACAACTTCTTGGCATCTTTCACAGGAGCCGAGGTAACTCGGGTCAAAGTAGGCTAGTCCTTCTATTATACGTATCAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCTCTTTACYGTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAAGAAGATGACGAGGGATTCTCGTGGAAGAGTATGCAGACAAGCCCTCATTTAGAATTAAGACAGGTAAAGAGAAAAATGGACCTGTCTAAAAAAAGAAAAGAAAACTTCCAGTTTTGGGTGGACAAACGAGTCAATTCGTTGAGGAATGATAGTGGAGTACCTCCAGTGGAAGATTATGTGAGTTCTCTTTATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTCTCTCTCTCTCTCGCTCGCTCACTCACTGACTATAACCCAATCAAATAATGTTTTTTCAAGAATTCAATACAGAAATGATTACTCTGTAACTGTAACTGTAATAATTTGCAGGCACCAATGGAACTTGAACAGCCGTATCAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATCTGAAGCAGACAAATA</pcr_primer_p1>
		<pcr_primer_p2>AAACTGGAAGTTTTCTTTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCTCTTTACCGTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAAGAAGATGACGAGGGATTCTCGTGGAAGAGTATGCAGACAAGCCCTCATTTAGAATTAAGACAGGTAAAGAGAAAAATGGACCTGTCTAAAAAAAGAAAAGAAAACTTCCAGTTT</canonical_amplicon>
		<polymorphic_amplicon>CAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCTCTTTACYGTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAAGAAGATGACGAGGGATTCTCGTGGAAGAGTATGCAGACAAGCCCTCATTTAGAATTAAGACAGGTAAAGAGAAAAATGGACCTGTCTAAAAAAAGAAAAGAAAACTTCCAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26624</snp_id>
        <super_contig>c002601153.Contig2</super_contig>
        <contig_pos>11476</contig_pos>
        <strand>+</strand>
        <context>TGCAGACAAG[C/T]CCTCATTTAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGACAAGAAGAAGATGACGAGGGATTCTCGTGGAAGAGTATGCAGACAAG</left_flank>
        <right_flank>CCTCATTTAGAATTAAGACAGGTAAAGAGAAAAATGGACCTGTCTAAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAGATACTCTCGCTGTCTGCGTCTCTCCGAAGTTCTGCCTAGTTGAAAATCGACTTTTAAATAAGTTATGGAAATGACTATTGGATCGCTGTGATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACAGAAGGTCCTTTTTTTGACCCAATTTAACTCGTTTTCTGTGAATGATATCAAAAAGTAGTCAACTGAAAAATTGTTTGAGATATTATAACCAATACTTTGTCCGTAGACAACTTCTTGGCATCTTTCACAGGAGCCGAGGTAACTCGGGTCAAAGTAGGCTAGTCCTTCTATTATACGTATCAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCTCTTTACCGTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAAGAAGATGACGAGGGATTCTCGTGGAAGAGTATGCAGACAAGCCCTCATTTAGAATTAAGACAGGTAAAGAGAAAAATGGACCTGTCTAAAAAAAGAAAAGAAAACTTCCAGTTTTGGGTGGACAAACGAGTCAATTCGTTGAGGAATGATAGTGGAGTACCTCCAGTGGAAGATTATGTGAGTTCTCTTTATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTCTCTCTCTCTCTCGCTCGCTCACTCACTGACTATAACCCAATCAAATAATGTTTTTTCAAGAATTCAATACAGAAATGATTACTCTGTAACTGTAACTGTAATAATTTGCAGGCACCAATGGAACTTGAACAGCCGTATCAGAATATTTCAAAACGAAGGGAAAAACAAAAATGGTTCAGTGGGCTCAGGAAAAAATGGAGAGCTCTTAAGGATTTACGTCCTGAA</canonical>
            <polymorphic>CGAGATACTCTCGCTGTCTGCGTCTCTCCGAAGTTCTGCCTAGTTGAAAATCGACTTTTAAATAAGTTATGGAAATGACTATTGGATCGCTGTGATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACAGAAGGTCCTTTTTTTGACCCAATTTAACTCGTTTTCTGTGAATGATATCAAAAAGTAGTCAACTGAAAAATTGTTTGAGATATTATAACCAATACTTTGTCCGTAGACAACTTCTTGGCATCTTTCACAGGAGCCGAGGTAACTCGGGTCAAAGTAGGCTAGTCCTTCTATTATACGTATCAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCTCTTTACCGTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAAGAAGATGACGAGGGATTCTCGTGGAAGAGTATGCAGACAAGYCCTCATTTAGAATTAAGACAGGTAAAGAGAAAAATGGACCTGTCTAAAAAAAGAAAAGAAAACTTCCAGTTTTGGGTGGACAAACGAGTCAATTCGTTGAGGAATGATAGTGGAGTACCTCCAGTGGAAGATTATGTGAGTTCTCTTTATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTCTCTCTCTCTCTCGCTCGCTCACTCACTGACTATAACCCAATCAAATAATGTTTTTTCAAGAATTCAATACAGAAATGATTACTCTGTAACTGTAACTGTAATAATTTGCAGGCACCAATGGAACTTGAACAGCCGTATCAGAATATTTCAAAACGAAGGGAAAAACAAAAATGGTTCAGTGGGCTCAGGAAAAAATGGAGAGCTCTTAAGGATTTACGTCCTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>408 277 92 91 51 25 23 19 14</canonical_bands>
                <polymorphic_bands>500 277 91 51 25 23 19 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAATCTGAAGCAGACAAATA</pcr_primer_p1>
		<pcr_primer_p2>AAACTGGAAGTTTTCTTTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCTCTTTACCGTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAAGAAGATGACGAGGGATTCTCGTGGAAGAGTATGCAGACAAGCCCTCATTTAGAATTAAGACAGGTAAAGAGAAAAATGGACCTGTCTAAAAAAAGAAAAGAAAACTTCCAGTTT</canonical_amplicon>
		<polymorphic_amplicon>CAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCTCTTTACCGTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAAGAAGATGACGAGGGATTCTCGTGGAAGAGTATGCAGACAAGYCCTCATTTAGAATTAAGACAGGTAAAGAGAAAAATGGACCTGTCTAAAAAAAGAAAAGAAAACTTCCAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26625</snp_id>
        <super_contig>c002601153.Contig2</super_contig>
        <contig_pos>11569</contig_pos>
        <strand>+</strand>
        <context>AACGAGTCAA[C/T]TCGTTGAGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTAAAAAAAGAAAAGAAAACTTCCAGTTTTGGGTGGACAAACGAGTCAA</left_flank>
        <right_flank>TCGTTGAGGAATGATAGTGGAGTACCTCCAGTGGAAGATTATGTGAGTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACAGAAGGTCCTTTTTTTGACCCAATTTAACTCGTTTTCTGTGAATGATATCAAAAAGTAGTCAACTGAAAAATTGTTTGAGATATTATAACCAATACTTTGTCCGTAGACAACTTCTTGGCATCTTTCACAGGAGCCGAGGTAACTCGGGTCAAAGTAGGCTAGTCCTTCTATTATACGTATCAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCTCTTTACCGTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAAGAAGATGACGAGGGATTCTCGTGGAAGAGTATGCAGACAAGCCCTCATTTAGAATTAAGACAGGTAAAGAGAAAAATGGACCTGTCTAAAAAAAGAAAAGAAAACTTCCAGTTTTGGGTGGACAAACGAGTCAATTCGTTGAGGAATGATAGTGGAGTACCTCCAGTGGAAGATTATGTGAGTTCTCTTTATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTCTCTCTCTCTCTCGCTCGCTCACTCACTGACTATAACCCAATCAAATAATGTTTTTTCAAGAATTCAATACAGAAATGATTACTCTGTAACTGTAACTGTAATAATTTGCAGGCACCAATGGAACTTGAACAGCCGTATCAGAATATTTCAAAACGAAGGGAAAAACAAAAATGGTTCAGTGGGCTCAGGAAAAAATGGAGAGCTCTTAAGGATTTACGTCCTGAAACTGTGGATTTTTATAGGTTAGTATCACTTTTTTAATGAATGAAACTTGAAAAATATAATTTTCCAACAGATATCAGGTTGTAAAAAATTGAA</canonical>
            <polymorphic>GATTTTTTTTCTGCTAGATAATATAGTCTTGAAACTGTGGAAACTGTAACAGAAGGTCCTTTTTTTGACCCAATTTAACTCGTTTTCTGTGAATGATATCAAAAAGTAGTCAACTGAAAAATTGTTTGAGATATTATAACCAATACTTTGTCCGTAGACAACTTCTTGGCATCTTTCACAGGAGCCGAGGTAACTCGGGTCAAAGTAGGCTAGTCCTTCTATTATACGTATCAAAATCTGAAGCAGACAAATAATTGCAGTTTCAAATAGATCTTAAATTTTTGAGATGTTAAACTAAAGCTAGTACACTGAAGCTTCTCTTTACCGTTCGAAATTTTCAGGTCAAAAAACGAAAACGACAAGAAGAAGATGACGAGGGATTCTCGTGGAAGAGTATGCAGACAAGCCCTCATTTAGAATTAAGACAGGTAAAGAGAAAAATGGACCTGTCTAAAAAAAGAAAAGAAAACTTCCAGTTTTGGGTGGACAAACGAGTCAAYTCGTTGAGGAATGATAGTGGAGTACCTCCAGTGGAAGATTATGTGAGTTCTCTTTATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTCTCTCTCTCTCTCGCTCGCTCACTCACTGACTATAACCCAATCAAATAATGTTTTTTCAAGAATTCAATACAGAAATGATTACTCTGTAACTGTAACTGTAATAATTTGCAGGCACCAATGGAACTTGAACAGCCGTATCAGAATATTTCAAAACGAAGGGAAAAACAAAAATGGTTCAGTGGGCTCAGGAAAAAATGGAGAGCTCTTAAGGATTTACGTCCTGAAACTGTGGATTTTTATAGGTTAGTATCACTTTTTTAATGAATGAAACTTGAAAAATATAATTTTCCAACAGATATCAGGTTGTAAAAAATTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>245 180 133 85 80 71 56 48 42 29 24 7</canonical_bands>
                <polymorphic_bands>325 180 133 85 71 56 48 42 29 24 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAGAAAAATGGACCTGTCTAA</pcr_primer_p1>
		<pcr_primer_p2>CATTATTTGATTGGGTTATAGTCA</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>AAGAGAAAAATGGACCTGTCTAAAAAAAGAAAAGAAAACTTCCAGTTTTGGGTGGACAAACGAGTCAATTCGTTGAGGAATGATAGTGGAGTACCTCCAGTGGAAGATTATGTGAGTTCTCTTTATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTCTCTCTCTCTCTCGCTCGCTCACTCACTGACTATAACCCAATCAAATAATG</canonical_amplicon>
		<polymorphic_amplicon>AAGAGAAAAATGGACCTGTCTAAAAAAAGAAAAGAAAACTTCCAGTTTTGGGTGGACAAACGAGTCAAYTCGTTGAGGAATGATAGTGGAGTACCTCCAGTGGAAGATTATGTGAGTTCTCTTTATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTCTCTCTCTCTCTCGCTCGCTCACTCACTGACTATAACCCAATCAAATAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26626</snp_id>
        <super_contig>c002601153.Contig2</super_contig>
        <contig_pos>14087</contig_pos>
        <strand>+</strand>
        <context>TTGCTTAAAG[G/T]TGGGGGGACA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACCGTATCAGAATATTTCAAGACGAAGAGAAAAGCAAAAATTGCTTAAAG</left_flank>
        <right_flank>TGGGGGGACATGAAAAAAATAATGTTCTCGATATTTCGTTTAAATATGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATTGCAATTTTTGATTTCTTATATAATTTTTTTTCGTCACGTTTGAATAATACTTGAATTTTTTCTTCTGAAATCTGTGAAACTCCTCGAAAAAATTGTCTGCTGGAACCTAATTATCTCGTTTCTTGTTTGAGATATCAAGAAATGTTTAACTGATAATATCTTTCTGATGTTGACTGAAAACTTTAAAAATCCTTTAAAAAAATTGCAGTCTTCCGTTATTTGGGATTTTTCCGTAACTTTCGACTTTGAGTCAATGCCTCTCGGTTTCTGTGACGATATCAAAAAATAGTAAACTGGCGAAATATTTTTGATATTATAATAAGCATTTTGCCAGTGTATTGCTTTTTCCAAAAGATGAATCTCATCAAACTTTTCGAGAATTCCAAATGGAAATGAGTATTCCGAAACTGAAATAATTTTTCAGGCACCAATGGAACTTGAACAACCGTATCAGAATATTTCAAGACGAAGAGAAAAGCAAAAATTGCTTAAAGTTGGGGGGACATGAAAAAAATAATGTTCTCGATATTTCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTTGGGGCAATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAACCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAGTGGGTTGAGGAAAAAATGGAGGGCTCTCAAGGATTTACGGCCTGAAACTGTGAATTTCCATAGGTAAGGATTACTATTTTTGGATCAAGTAAAGTCGAGAACTCGCAGTTTTCCAATGATTGCAAGTTATCTAGAAAACCCTGAAAAATTGAAATTTCATGAAAACCCGGAAAGTTATAAATTTCTGAAAAATTGTAGTTTTCTAAAATGTCCATGTTCTCTTTTTCAGAT</canonical>
            <polymorphic>TTATTGCAATTTTTGATTTCTTATATAATTTTTTTTCGTCACGTTTGAATAATACTTGAATTTTTTCTTCTGAAATCTGTGAAACTCCTCGAAAAAATTGTCTGCTGGAACCTAATTATCTCGTTTCTTGTTTGAGATATCAAGAAATGTTTAACTGATAATATCTTTCTGATGTTGACTGAAAACTTTAAAAATCCTTTAAAAAAATTGCAGTCTTCCGTTATTTGGGATTTTTCCGTAACTTTCGACTTTGAGTCAATGCCTCTCGGTTTCTGTGACGATATCAAAAAATAGTAAACTGGCGAAATATTTTTGATATTATAATAAGCATTTTGCCAGTGTATTGCTTTTTCCAAAAGATGAATCTCATCAAACTTTTCGAGAATTCCAAATGGAAATGAGTATTCCGAAACTGAAATAATTTTTCAGGCACCAATGGAACTTGAACAACCGTATCAGAATATTTCAAGACGAAGAGAAAAGCAAAAATTGCTTAAAGKTGGGGGGACATGAAAAAAATAATGTTCTCGATATTTCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTTGGGGCAATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAACCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAGTGGGTTGAGGAAAAAATGGAGGGCTCTCAAGGATTTACGGCCTGAAACTGTGAATTTCCATAGGTAAGGATTACTATTTTTGGATCAAGTAAAGTCGAGAACTCGCAGTTTTCCAATGATTGCAAGTTATCTAGAAAACCCTGAAAAATTGAAATTTCATGAAAACCCGGAAAGTTATAAATTTCTGAAAAATTGTAGTTTTCTAAAATGTCCATGTTCTCTTTTTCAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAACCGTATCAGAATATTTCAA</pcr_primer_p1>
		<pcr_primer_p2>TACAACGCTTAATGTCACTCTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACAACCGTATCAGAATATTTCAAGACGAAGAGAAAAGCAAAAATTGCTTAAAGTTGGGGGGACATGAAAAAAATAATGTTCTCGATATTTCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTTGGGGCAATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAACCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTA</canonical_amplicon>
		<polymorphic_amplicon>ACAACCGTATCAGAATATTTCAAGACGAAGAGAAAAGCAAAAATTGCTTAAAGKTGGGGGGACATGAAAAAAATAATGTTCTCGATATTTCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTTGGGGCAATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAACCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26627</snp_id>
        <super_contig>c002601468.Contig2</super_contig>
        <contig_pos>22356</contig_pos>
        <strand>+</strand>
        <context>TTWCTTGAAG[A/G]CCTGAGGGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGGTTGGCCCGGTAGAGAATAGAGATGGGATCCATTGACTTACTTGAAG</left_flank>
        <right_flank>CCTGAGGGTCTCTGTAGAGATTTGAAATTTTGGAGAAAATAACCTTTGCC</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTCATTATCACATAAATAATATTTTGTTAGTTGACCACTTTCTCATACCTTCAACAGGAAACGAGATATACGAGCTCAACTTACCTGTACAGAATAGGTCCTCAACTGATGATAAAAAATGTCGTGTATGAAAGTTTCAGAAATCAAAAAAATCGCCGTCGTTCCGTAGCAAATAATTTTGAAGCTCATTGTAAATGAGCTCCGTTCAAATCGAATTTTCTGAATCAAATAGTAGCAAAAATAGATGCCAACTTGTCCTTTTGCCCAGTCGAACGACGAATAGATTACGGTATTTTTAGGGTTTAGCAGAGCAGTGACAGGGCTGGAAATCTCTTTTTCAAGCTAACAAGGTCTTCAAAAACTCACATATAAACCGAAAACCCCATTGCTAGAACCATGTAACAAATTTTGGATTTCAAAGGCCTGTACACTCCATTGGCATCGCATAGGGTTGGCCCGGTAGAGAATAGAGATGGGATCCATTGACTTACTTGAAGACCTGAGGGTCTCTGTAGAGATTTGAAATTTTGGAGAAAATAACCTTTGCCAATACTAACCTCAAAATAGTACTTGTAGCAGAAAAAACCAGTAGAACTTATTGTGACCAACAGAAAGATGATTTTGAGGGGTGTTGTAGAAGATTCGGTAGATTCGAAGATCTGAAAATTTGGGAAATTGTTGAATTGCATTTTGTTTTGTAGGACTATTTGAAAGCTACATTTCAATTTTTAGATTTAAAAAAAAATCTTTAGTTTGAAAGAAATTATGGGCTAACGCCTGTGGTGACCCATATCGTCCGGGTTTCTATCGTACCGTCCAGTTTCAACGGCTTCGTCACCTAACCCTCCCAGCTTTAACGGCTCGCCTTCAAAGAGATAAGATTTCCAAATTTATTATAGTTTTCATAGATTTGTAGAACTTTTAAAGATCTATAAACTCCTTTTTGGATTTTTCAAAAAATGTTAAATTTGAACGAAGTTATAAGTTAACGCCTGGGG</canonical>
            <polymorphic>AATTCATTATCACATAAATAATATTTTGTTAGTTGACCACTTTCTCATACCTTCAACAGGAAACGAGATATACGAGCTCAACTTACCTGTACAGAATAGGTCCTCAACTGATGATAAAAAATGTCGTGTATGAAAGTTTCAGAAATCAAAAAAATCGCCGTCGTTCCGTAGCAAATAATTTTGAAGCTCATTGTAAATGAGCTCCGTTCAAATCGAATTTTCTGAATCAAATAGTAGCAAAAATAGATGCCAACTTGTCCTTTTGCCCAGTCGAACGACGAATAGATTACGGTATTTTTAGGGTTTAGCAGAGCAGTGACAGGGCTGGAAATCTCTTTTTCAAGCTAACAAGGTCTTCAAAAACTCACATATAAACCGAAAACCCCATTGCTAGAACCATGTAACAAATTTTGGATTTCAAAGGCCTGTACACTCCATTGGCATCGCATAGGGTTGGCCCGGTAGAGAATAGAGATGGGATCCATTGACTTACTTGAAGRCCTGAGGGTCTCTGTAGAGATTTGAAATTTTGGAGAAAATAACCTTTGCCAATACTAACCTCAAAATAGTACTTGTAGCAGAAAAAACCAGTAGAACTTATTGTGACCAACAGAAAGATGATTTTGAGGGGTGTTGTAGAAGATTCGGTAGATTCGAAGATCTGAAAATTTGGGAAATTGTTGAATTGCATTTTGTTTTGTAGGACTATTTGAAAGCTACATTTCAATTTTTAGATTTAAAAAAAAATCTTTAGTTTGAAAGAAATTATGGGCTAACGCCTGTGGTGACCCATATCGTCCGGGTTTCTATCGTACCGTCCAGTTTCAACGGCTTCGTCACCTAACCCTCCCAGCTTTAACGGCTCGCCTTCAAAGAGATAAGATTTCCAAATTTATTATAGTTTTCATAGATTTGTAGAACTTTTAAAGATCTATAAACTCCTTTTTGGATTTTTCAAAAAATGTTAAATTTGAACGAAGTTATAAGTTAACGCCTGGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNNNNGTC</site>
                <isoschizomers>
                    <enzyme>AasI</enzyme>
                    <enzyme>DrdI</enzyme>
                    <enzyme>DseDI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTTCAAGCTAACAAGGTC</pcr_primer_p1>
		<pcr_primer_p2>TGCTACAAGTACTATTTTGAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTTCAAGCTAACAAGGTCTTCAAAAACTCACATATAAACCGAAAACCCCATTGCTAGAACCATGTAACAAATTTTGGATTTCAAAGGCCTGTACACTCCATTGGCATCGCATAGGGTTGGCCCGGTAGAGAATAGAGATGGGATCCATTGACTTACTTGAAGACCTGAGGGTCTCTGTAGAGATTTGAAATTTTGGAGAAAATAACCTTTGCCAATACTAACCTCAAAATAGTACTTGTAGCA</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTTCAAGCTAACAAGGTCTTCAAAAACTCACATATAAACCGAAAACCCCATTGCTAGAACCATGTAACAAATTTTGGATTTCAAAGGCCTGTACACTCCATTGGCATCGCATAGGGTTGGCCCGGTAGAGAATAGAGATGGGATCCATTGACTTACTTGAAGRCCTGAGGGTCTCTGTAGAGATTTGAAATTTTGGAGAAAATAACCTTTGCCAATACTAACCTCAAAATAGTACTTGTAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26632</snp_id>
        <super_contig>c002601468.Contig2</super_contig>
        <contig_pos>25466</contig_pos>
        <strand></strand>
        <context>ttatcaccaa[A/C]attttattaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGATATCAAAAATGGGTTAACTGATAAAATGTTTATCAGATTATCACCAA</left_flank>
        <right_flank>ATTTTATTAATTTACAAAGTTTTGATATCTCTCACAGGAACAAAGATAAG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCGGCCGGCCTTGGCTAGCCGCGGCTTTTCACGGCTTTCACAAAAAAGCCGCGGCCGGCCTCGGCCTCAAAAATCAAGCCGCCTTTTTGCACAGCCTTGAAAAAAACTCACTTAAAATATTTGGAATCCTTGATCAATCGCTGTTTTTGATATTCATGATGACTAACTATTTTTTCTCCGGGGTTCTCAAAAAGCCATTGCTTATCCAGCTTCACGTTTCCCTCCAGATCATTTCCTTCAAAAATACTTGGCTCATTGTTTTCATGACGATCCAAAAGGCGATACTTGAAATATGCTGGAAATTTTGGAGTTGTATTTTTTATATATTTTTTGGATCTCACTCAATAAAAGCACAAAAATTATACTGGCTGCATAAATGAATAGCGGGATGACAGATACCAAAGTTTTCTCTGAAAAGTTTGAGCTCAATTATCTCAATTCCTGTGAGAGATATCAAAAATGGGTTAACTGATAAAATGTTTATCAGATTATCACCAAAATTTTATTAATTTACAAAGTTTTGATATCTCTCACAGGAACAAAGATAAGTGAGCTTTAATACCTTCAACAGGTGTCACCGAAATTTTCGCTTCCTTCACTCTATGATAAACATCTGGAATTTTCCATAAAGGTTCTGAAAATCAAATTTTTAAAAAATTCATTTTTACTACCTAAAAACCTGTAAAATTCCCACAAAGCGTGTCATCTGGCATCACAGTAAACGCGATATGAAATTGGTCTCCAATGTCTTCTTTCTGGAAAATTCCAAAGTTTTGAAAGATCAAAAAATCCCTTTTAGAATTCTTACTCGAATTGAAAATCCAGCAAATTTTGTGAAAGTTTGAAAATAGTAGTCATTGCTCAGCTCTAACATTCCGAAACCATCGAATAGGGGACACTGAAAATTACTACTGTAAGCTCTCTGAAGCCATTAAAACAGCCAGCTTTGAGCCCTTATATCTAATTTTCTGCACAAGGTATCAAAAAGTGCTTAACTAA</canonical>
            <polymorphic>CGCGGCCGGCCTTGGCTAGCCGCGGCTTTTCACGGCTTTCACAAAAAAGCCGCGGCCGGCCTCGGCCTCAAAAATCAAGCCGCCTTTTTGCACAGCCTTGAAAAAAACTCACTTAAAATATTTGGAATCCTTGATCAATCGCTGTTTTTGATATTCATGATGACTAACTATTTTTTCTCCGGGGTTCTCAAAAAGCCATTGCTTATCCAGCTTCACGTTTCCCTCCAGATCATTTCCTTCAAAAATACTTGGCTCATTGTTTTCATGACGATCCAAAAGGCGATACTTGAAATATGCTGGAAATTTTGGAGTTGTATTTTTTATATATTTTTTGGATCTCACTCAATAAAAGCACAAAAATTATACTGGCTGCATAAATGAATAGCGGGATGACAGATACCAAAGTTTTCTCTGAAAAGTTTGAGCTCAATTATCTCAATTCCTGTGAGAGATATCAAAAATGGGTTAACTGATAAAATGTTTATCAGATTATCACCAAMATTTTATTAATTTACAAAGTTTTGATATCTCTCACAGGAACAAAGATAAGTGAGCTTTAATACCTTCAACAGGTGTCACCGAAATTTTCGCTTCCTTCACTCTATGATAAACATCTGGAATTTTCCATAAAGGTTCTGAAAATCAAATTTTTAAAAAATTCATTTTTACTACCTAAAAACCTGTAAAATTCCCACAAAGCGTGTCATCTGGCATCACAGTAAACGCGATATGAAATTGGTCTCCAATGTCTTCTTTCTGGAAAATTCCAAAGTTTTGAAAGATCAAAAAATCCCTTTTAGAATTCTTACTCGAATTGAAAATCCAGCAAATTTTGTGAAAGTTTGAAAATAGTAGTCATTGCTCAGCTCTAACATTCCGAAACCATCGAATAGGGGACACTGAAAATTACTACTGTAAGCTCTCTGAAGCCATTAAAACAGCCAGCTTTGAGCCCTTATATCTAATTTTCTGCACAAGGTATCAAAAAGTGCTTAACTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>301 198 172 83 76 38 36 30 28 27 11</canonical_bands>
                <polymorphic_bands>301 281 172 76 38 36 30 28 27 11</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>301 76 74 70 62 59 57 47 38 37 36 30 29 27 16 12 11 9 9</canonical_bands>
                <polymorphic_bands>301 76 74 71 70 59 57 47 38 37 36 30 29 27 16 12 11 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATAGCGGGATGACAGATAC</pcr_primer_p1>
		<pcr_primer_p2>TATGGAAAATTCCAGATGTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATAGCGGGATGACAGATACCAAAGTTTTCTCTGAAAAGTTTGAGCTCAATTATCTCAATTCCTGTGAGAGATATCAAAAATGGGTTAACTGATAAAATGTTTATCAGATTATCACCAAAATTTTATTAATTTACAAAGTTTTGATATCTCTCACAGGAACAAAGATAAGTGAGCTTTAATACCTTCAACAGGTGTCACCGAAATTTTCGCTTCCTTCACTCTATGATAAACATCTGGAATTTTCCATA</canonical_amplicon>
		<polymorphic_amplicon>GAATAGCGGGATGACAGATACCAAAGTTTTCTCTGAAAAGTTTGAGCTCAATTATCTCAATTCCTGTGAGAGATATCAAAAATGGGTTAACTGATAAAATGTTTATCAGATTATCACCAAMATTTTATTAATTTACAAAGTTTTGATATCTCTCACAGGAACAAAGATAAGTGAGCTTTAATACCTTCAACAGGTGTCACCGAAATTTTCGCTTCCTTCACTCTATGATAAACATCTGGAATTTTCCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26633</snp_id>
        <super_contig>c002601468.Contig2</super_contig>
        <contig_pos>54617</contig_pos>
        <strand></strand>
        <context>ttcgaatctg[G/A]cacgcagcca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGCTTAACTTCACGTTTTTTTCAAAACACGTTTCAAAATTTTCGAATCTG</left_flank>
        <right_flank>CACGCAGCCAACTTTTGTGTGCGACGAAGCGCGCGTTTTTCAGGTTCCAG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTGGAGTTGTTCAATCGATGAGACATTCAAGTATTCGAAAAGTTTGGTTACTGTAGATATTGGGTGTTCCAGGCAGACGAAATCGAATTCTTCAGAGTTTAGCAATGAGATCGCTTGCTGCAAAATAATAGTTTTATTTTTCAATAAATTTACAGTTTTTTTTAACTCGAATTCTATATTTCAACACCAGTACTGTCAAAACCTGACATCACCATCGAATTCCATATGCTTTCTTATGGGGTTATACAGTGAGAAGCAATTCAGCAAATTGCCGGTTTTTTTCCGGAGCGAGACCCAACCGGGAAATTCGTTGCGCCTTTAATCTTGTGGCGATTTACGGCACGGCCTCGCGGAAGGGAACCTAGATTTAAAAATTGGAAAGCGCGCCAAGTTTGGACGCGTAGCGCGGTCGCGTCGCGGCTTTTCGGTGAGTAGCGACTCAACAACGCTTAACTTCACGTTTTTTTCAAAACACGTTTCAAAATTTTCGAATCTGGCACGCAGCCAACTTTTGTGTGCGACGAAGCGCGCGTTTTTCAGGTTCCAGACCGCGATGCCGTGAAAATTGCTGGTTTTTCTGCTTTCTGCATAAGGAAAAAACCAGCAATTCGCTGAATTTCTTGTCACTGAATAACCCCATTACCCAAATTCTGGAATTTTCAGTTTTCTTCTTCAAAGTGTCGTAAGATATGGTGTTTCTGTAGTTTGGTCTATGCAGACAATACATCATATTTTACGGCACTTTGAGCTGGGAAGCTGAAAATTGCAGAATAGGGATAGGGGTCCATGAGNNNNNNNNNNCGAATGGTGTTTTTATATTTTGAAAATTCCGAACCAGTGGCCTAGAAAATTGAAATTATCGGTCACCAGGCCAATGGGTTGGAACTGTATTAAAATCTTGAAATTTTTAGCTTCCTAGCTCAAAGTGTCGTGGAATATGATGTATTGTCTGCAAACACCAAACTACAGTAACATCATATCTTACGACACTTTGAAC</canonical>
            <polymorphic>TTTTTGGAGTTGTTCAATCGATGAGACATTCAAGTATTCGAAAAGTTTGGTTACTGTAGATATTGGGTGTTCCAGGCAGACGAAATCGAATTCTTCAGAGTTTAGCAATGAGATCGCTTGCTGCAAAATAATAGTTTTATTTTTCAATAAATTTACAGTTTTTTTTAACTCGAATTCTATATTTCAACACCAGTACTGTCAAAACCTGACATCACCATCGAATTCCATATGCTTTCTTATGGGGTTATACAGTGAGAAGCAATTCAGCAAATTGCCGGTTTTTTTCCGGAGCGAGACCCAACCGGGAAATTCGTTGCGCCTTTAATCTTGTGGCGATTTACGGCACGGCCTCGCGGAAGGGAACCTAGATTTAAAAATTGGAAAGCGCGCCAAGTTTGGACGCGTAGCGCGGTCGCGTCGCGGCTTTTCGGTGAGTAGCGACTCAACAACGCTTAACTTCACGTTTTTTTCAAAACACGTTTCAAAATTTTCGAATCTGRCACGCAGCCAACTTTTGTGTGCGACGAAGCGCGCGTTTTTCAGGTTCCAGACCGCGATGCCGTGAAAATTGCTGGTTTTTCTGCTTTCTGCATAAGGAAAAAACCAGCAATTCGCTGAATTTCTTGTCACTGAATAACCCCATTACCCAAATTCTGGAATTTTCAGTTTTCTTCTTCAAAGTGTCGTAAGATATGGTGTTTCTGTAGTTTGGTCTATGCAGACAATACATCATATTTTACGGCACTTTGAGCTGGGAAGCTGAAAATTGCAGAATAGGGATAGGGGTCCATGAGNNNNNNNNNNCGAATGGTGTTTTTATATTTTGAAAATTCCGAACCAGTGGCCTAGAAAATTGAAATTATCGGTCACCAGGCCAATGGGTTGGAACTGTATTAAAATCTTGAAATTTTTAGCTTCCTAGCTCAAAGTGTCGTGGAATATGATGTATTGTCTGCAAACACCAAACTACAGTAACATCATATCTTACGACACTTTGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>469 269 118 115 29</canonical_bands>
                <polymorphic_bands>469 269 144 118</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCGAATTCCATATGCTTTCT</pcr_primer_p1>
		<pcr_primer_p2>TAATACAGTTCCAACCCATTG</pcr_primer_p2>
		<pcr_amplicon_size>680</pcr_amplicon_size>
		<canonical_amplicon>ATCGAATTCCATATGCTTTCTTATGGGGTTATACAGTGAGAAGCAATTCAGCAAATTGCCGGTTTTTTTCCGGAGCGAGACCCAACCGGGAAATTCGTTGCGCCTTTAATCTTGTGGCGATTTACGGCACGGCCTCGCGGAAGGGAACCTAGATTTAAAAATTGGAAAGCGCGCCAAGTTTGGACGCGTAGCGCGGTCGCGTCGCGGCTTTTCGGTGAGTAGCGACTCAACAACGCTTAACTTCACGTTTTTTTCAAAACACGTTTCAAAATTTTCGAATCTGGCACGCAGCCAACTTTTGTGTGCGACGAAGCGCGCGTTTTTCAGGTTCCAGACCGCGATGCCGTGAAAATTGCTGGTTTTTCTGCTTTCTGCATAAGGAAAAAACCAGCAATTCGCTGAATTTCTTGTCACTGAATAACCCCATTACCCAAATTCTGGAATTTTCAGTTTTCTTCTTCAAAGTGTCGTAAGATATGGTGTTTCTGTAGTTTGGTCTATGCAGACAATACATCATATTTTACGGCACTTTGAGCTGGGAAGCTGAAAATTGCAGAATAGGGATAGGGGTCCATGAGNNNNNNNNNNCGAATGGTGTTTTTATATTTTGAAAATTCCGAACCAGTGGCCTAGAAAATTGAAATTATCGGTCACCAGGCCAATGGGTTGGAACTGTATTA</canonical_amplicon>
		<polymorphic_amplicon>ATCGAATTCCATATGCTTTCTTATGGGGTTATACAGTGAGAAGCAATTCAGCAAATTGCCGGTTTTTTTCCGGAGCGAGACCCAACCGGGAAATTCGTTGCGCCTTTAATCTTGTGGCGATTTACGGCACGGCCTCGCGGAAGGGAACCTAGATTTAAAAATTGGAAAGCGCGCCAAGTTTGGACGCGTAGCGCGGTCGCGTCGCGGCTTTTCGGTGAGTAGCGACTCAACAACGCTTAACTTCACGTTTTTTTCAAAACACGTTTCAAAATTTTCGAATCTGRCACGCAGCCAACTTTTGTGTGCGACGAAGCGCGCGTTTTTCAGGTTCCAGACCGCGATGCCGTGAAAATTGCTGGTTTTTCTGCTTTCTGCATAAGGAAAAAACCAGCAATTCGCTGAATTTCTTGTCACTGAATAACCCCATTACCCAAATTCTGGAATTTTCAGTTTTCTTCTTCAAAGTGTCGTAAGATATGGTGTTTCTGTAGTTTGGTCTATGCAGACAATACATCATATTTTACGGCACTTTGAGCTGGGAAGCTGAAAATTGCAGAATAGGGATAGGGGTCCATGAGNNNNNNNNNNCGAATGGTGTTTTTATATTTTGAAAATTCCGAACCAGTGGCCTAGAAAATTGAAATTATCGGTCACCAGGCCAATGGGTTGGAACTGTATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26634</snp_id>
        <super_contig>c002601468.Contig2</super_contig>
        <contig_pos>54707</contig_pos>
        <strand></strand>
        <context>tctgctttct[G/A]cataaggaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCAGGTTCCAGACCGCGATGCCGTGAAAATTGCTGGTTTTTCTGCTTTCT</left_flank>
        <right_flank>CATAAGGAAAAAACCAGCAATTCGCTGAATTTCTTGTCACTGAATAACCC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTCAGAGTTTAGCAATGAGATCGCTTGCTGCAAAATAATAGTTTTATTTTTCAATAAATTTACAGTTTTTTTTAACTCGAATTCTATATTTCAACACCAGTACTGTCAAAACCTGACATCACCATCGAATTCCATATGCTTTCTTATGGGGTTATACAGTGAGAAGCAATTCAGCAAATTGCCGGTTTTTTTCCGGAGCGAGACCCAACCGGGAAATTCGTTGCGCCTTTAATCTTGTGGCGATTTACGGCACGGCCTCGCGGAAGGGAACCTAGATTTAAAAATTGGAAAGCGCGCCAAGTTTGGACGCGTAGCGCGGTCGCGTCGCGGCTTTTCGGTGAGTAGCGACTCAACAACGCTTAACTTCACGTTTTTTTCAAAACACGTTTCAAAATTTTCGAATCTGGCACGCAGCCAACTTTTGTGTGCGACGAAGCGCGCGTTTTTCAGGTTCCAGACCGCGATGCCGTGAAAATTGCTGGTTTTTCTGCTTTCTGCATAAGGAAAAAACCAGCAATTCGCTGAATTTCTTGTCACTGAATAACCCCATTACCCAAATTCTGGAATTTTCAGTTTTCTTCTTCAAAGTGTCGTAAGATATGGTGTTTCTGTAGTTTGGTCTATGCAGACAATACATCATATTTTACGGCACTTTGAGCTGGGAAGCTGAAAATTGCAGAATAGGGATAGGGGTCCATGAGNNNNNNNNNNCGAATGGTGTTTTTATATTTTGAAAATTCCGAACCAGTGGCCTAGAAAATTGAAATTATCGGTCACCAGGCCAATGGGTTGGAACTGTATTAAAATCTTGAAATTTTTAGCTTCCTAGCTCAAAGTGTCGTGGAATATGATGTATTGTCTGCAAACACCAAACTACAGTAACATCATATCTTACGACACTTTGAACTAGAAGGCTGAAATTTCCAGAGTTTCGGTAAGAGAACATGTGGAATTCAATGGTGATGTTGGTTTTTGAAAAAAGAAGAAAGAACTCAGA</canonical>
            <polymorphic>TTCTTCAGAGTTTAGCAATGAGATCGCTTGCTGCAAAATAATAGTTTTATTTTTCAATAAATTTACAGTTTTTTTTAACTCGAATTCTATATTTCAACACCAGTACTGTCAAAACCTGACATCACCATCGAATTCCATATGCTTTCTTATGGGGTTATACAGTGAGAAGCAATTCAGCAAATTGCCGGTTTTTTTCCGGAGCGAGACCCAACCGGGAAATTCGTTGCGCCTTTAATCTTGTGGCGATTTACGGCACGGCCTCGCGGAAGGGAACCTAGATTTAAAAATTGGAAAGCGCGCCAAGTTTGGACGCGTAGCGCGGTCGCGTCGCGGCTTTTCGGTGAGTAGCGACTCAACAACGCTTAACTTCACGTTTTTTTCAAAACACGTTTCAAAATTTTCGAATCTGGCACGCAGCCAACTTTTGTGTGCGACGAAGCGCGCGTTTTTCAGGTTCCAGACCGCGATGCCGTGAAAATTGCTGGTTTTTCTGCTTTCTRCATAAGGAAAAAACCAGCAATTCGCTGAATTTCTTGTCACTGAATAACCCCATTACCCAAATTCTGGAATTTTCAGTTTTCTTCTTCAAAGTGTCGTAAGATATGGTGTTTCTGTAGTTTGGTCTATGCAGACAATACATCATATTTTACGGCACTTTGAGCTGGGAAGCTGAAAATTGCAGAATAGGGATAGGGGTCCATGAGNNNNNNNNNNCGAATGGTGTTTTTATATTTTGAAAATTCCGAACCAGTGGCCTAGAAAATTGAAATTATCGGTCACCAGGCCAATGGGTTGGAACTGTATTAAAATCTTGAAATTTTTAGCTTCCTAGCTCAAAGTGTCGTGGAATATGATGTATTGTCTGCAAACACCAAACTACAGTAACATCATATCTTACGACACTTTGAACTAGAAGGCTGAAATTTCCAGAGTTTCGGTAAGAGAACATGTGGAATTCAATGGTGATGTTGGTTTTTGAAAAAAGAAGAAAGAACTCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>467 186 135 128 51 33</canonical_bands>
                <polymorphic_bands>595 186 135 51 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCGAATTCCATATGCTTTCT</pcr_primer_p1>
		<pcr_primer_p2>TAATACAGTTCCAACCCATTG</pcr_primer_p2>
		<pcr_amplicon_size>680</pcr_amplicon_size>
		<canonical_amplicon>ATCGAATTCCATATGCTTTCTTATGGGGTTATACAGTGAGAAGCAATTCAGCAAATTGCCGGTTTTTTTCCGGAGCGAGACCCAACCGGGAAATTCGTTGCGCCTTTAATCTTGTGGCGATTTACGGCACGGCCTCGCGGAAGGGAACCTAGATTTAAAAATTGGAAAGCGCGCCAAGTTTGGACGCGTAGCGCGGTCGCGTCGCGGCTTTTCGGTGAGTAGCGACTCAACAACGCTTAACTTCACGTTTTTTTCAAAACACGTTTCAAAATTTTCGAATCTGGCACGCAGCCAACTTTTGTGTGCGACGAAGCGCGCGTTTTTCAGGTTCCAGACCGCGATGCCGTGAAAATTGCTGGTTTTTCTGCTTTCTGCATAAGGAAAAAACCAGCAATTCGCTGAATTTCTTGTCACTGAATAACCCCATTACCCAAATTCTGGAATTTTCAGTTTTCTTCTTCAAAGTGTCGTAAGATATGGTGTTTCTGTAGTTTGGTCTATGCAGACAATACATCATATTTTACGGCACTTTGAGCTGGGAAGCTGAAAATTGCAGAATAGGGATAGGGGTCCATGAGNNNNNNNNNNCGAATGGTGTTTTTATATTTTGAAAATTCCGAACCAGTGGCCTAGAAAATTGAAATTATCGGTCACCAGGCCAATGGGTTGGAACTGTATTA</canonical_amplicon>
		<polymorphic_amplicon>ATCGAATTCCATATGCTTTCTTATGGGGTTATACAGTGAGAAGCAATTCAGCAAATTGCCGGTTTTTTTCCGGAGCGAGACCCAACCGGGAAATTCGTTGCGCCTTTAATCTTGTGGCGATTTACGGCACGGCCTCGCGGAAGGGAACCTAGATTTAAAAATTGGAAAGCGCGCCAAGTTTGGACGCGTAGCGCGGTCGCGTCGCGGCTTTTCGGTGAGTAGCGACTCAACAACGCTTAACTTCACGTTTTTTTCAAAACACGTTTCAAAATTTTCGAATCTGGCACGCAGCCAACTTTTGTGTGCGACGAAGCGCGCGTTTTTCAGGTTCCAGACCGCGATGCCGTGAAAATTGCTGGTTTTTCTGCTTTCTRCATAAGGAAAAAACCAGCAATTCGCTGAATTTCTTGTCACTGAATAACCCCATTACCCAAATTCTGGAATTTTCAGTTTTCTTCTTCAAAGTGTCGTAAGATATGGTGTTTCTGTAGTTTGGTCTATGCAGACAATACATCATATTTTACGGCACTTTGAGCTGGGAAGCTGAAAATTGCAGAATAGGGATAGGGGTCCATGAGNNNNNNNNNNCGAATGGTGTTTTTATATTTTGAAAATTCCGAACCAGTGGCCTAGAAAATTGAAATTATCGGTCACCAGGCCAATGGGTTGGAACTGTATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26635</snp_id>
        <super_contig>c002601468.Contig2</super_contig>
        <contig_pos>58618</contig_pos>
        <strand>+</strand>
        <context>CGGAAGTCGC[C/G]AGAAATCGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TACTCGTGGAGCTCTATCATATCTGATTTAGTTGGTTCATCGGAAGTCGC</left_flank>
        <right_flank>AGAAATCGGAGCCGTCAAACCACTCGATTTTTCACCCATCGTGTATTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGCTGGACCTGGAGGTATAACTGAATCTGGGGCTATAACTGAAGCTAGAGATACTACTAGAGCAAGCGATATAACTGGAGCTAGCGGTATAACTAAAGCTTGAGCTAATGCTGGAGGTATAGCTGAAGCTGAAGGCATAACTGAAGCTGGAGGTATAATTGGAGCTAGAGGCTTAACTGAAGCTGGCCATACTTGTAATCCGGGCCTTTGCCGGGCCTTCGCGGGCCCTGCCATAACTTCTTTCAGAATCAATTTTTCGAACCAACTCAATCAGGTATGATAGAGCTCCACGAGTACTACAAAGCGGTATTGTTTGGAATACTGTATCTTATCTATGAACAGAGTTACAGAGCAAAAGGAGCAAAAAAACGGAGGCCCGCCCCGGGCCTGCCGGGCCCTGCGAGAAAAGCCACTTTATGATCTGTANNNNNNNNNNACCGTTTTGTAGTACTCGTGGAGCTCTATCATATCTGATTTAGTTGGTTCATCGGAAGTCGCTAGAAATCGGAGCCGTCAAACCACTCGATTTTTCACCCATCGTGTATTCAAGACTGGTTAACTGCACTGGTCTGTGGCACGAACATTATTTCCGTTGAGCTGCTATGCCCAAATAATGCGTGTATGCATTTGACCACTTTTGCAATGAGCTATACTGTGGACGGGTGGGTTGATAGATATTAGGTTGGTCGAAAAGTAATGCGCGTTTTTGATGTACTTTATTTTTATTGAAAAAAACAAAACAAGACAAAATTAATTGAAGGGATACTTTCAATCACTAATGATTTTCAGCTTACTGGCAACGCATGTGCAAAGATTCGATGCCTCTGTTGTAGAACTCCACTGGCTGTGACTCGAAGTAGTTCGGAACCCAAATTTTCACTTTTTCGTTATTCTTGAACTTTTTCTCAGCGAGATGATGCGGCATTGGTTGGATCAAGTGATAGTCTGATAGTGCCAAATCTCGGCTGTAAGGCGGATAAAAATCTTTTCTCAGCGCGT</canonical>
            <polymorphic>GAGCTGGACCTGGAGGTATAACTGAATCTGGGGCTATAACTGAAGCTAGAGATACTACTAGAGCAAGCGATATAACTGGAGCTAGCGGTATAACTAAAGCTTGAGCTAATGCTGGAGGTATAGCTGAAGCTGAAGGCATAACTGAAGCTGGAGGTATAATTGGAGCTAGAGGCTTAACTGAAGCTGGCCATACTTGTAATCCGGGCCTTTGCCGGGCCTTCGCGGGCCCTGCCATAACTTCTTTCAGAATCAATTTTTCGAACCAACTCAATCAGGTATGATAGAGCTCCACGAGTACTACAAAGCGGTATTGTTTGGAATACTGTATCTTATCTATGAACAGAGTTACAGAGCAAAAGGAGCAAAAAAACGGAGGCCCGCCCCGGGCCTGCCGGGCCCTGCGAGAAAAGCCACTTTATGATCTGTANNNNNNNNNNACCGTTTTGTAGTACTCGTGGAGCTCTATCATATCTGATTTAGTTGGTTCATCGGAAGTCGCSAGAAATCGGAGCCGTCAAACCACTCGATTTTTCACCCATCGTGTATTCAAGACTGGTTAACTGCACTGGTCTGTGGCACGAACATTATTTCCGTTGAGCTGCTATGCCCAAATAATGCGTGTATGCATTTGACCACTTTTGCAATGAGCTATACTGTGGACGGGTGGGTTGATAGATATTAGGTTGGTCGAAAAGTAATGCGCGTTTTTGATGTACTTTATTTTTATTGAAAAAAACAAAACAAGACAAAATTAATTGAAGGGATACTTTCAATCACTAATGATTTTCAGCTTACTGGCAACGCATGTGCAAAGATTCGATGCCTCTGTTGTAGAACTCCACTGGCTGTGACTCGAAGTAGTTCGGAACCCAAATTTTCACTTTTTCGTTATTCTTGAACTTTTTCTCAGCGAGATGATGCGGCATTGGTTGGATCAAGTGATAGTCTGATAGTGCCAAATCTCGGCTGTAAGGCGGATAAAAATCTTTTCTCAGCGCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 333 84 46 24 12</canonical_bands>
                <polymorphic_bands>834 84 46 24 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAGCCACTTTATGATCTGTA</pcr_primer_p1>
		<pcr_primer_p2>ACAGTATAGCTCATTGCAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GAAAAGCCACTTTATGATCTGTANNNNNNNNNNACCGTTTTGTAGTACTCGTGGAGCTCTATCATATCTGATTTAGTTGGTTCATCGGAAGTCGCTAGAAATCGGAGCCGTCAAACCACTCGATTTTTCACCCATCGTGTATTCAAGACTGGTTAACTGCACTGGTCTGTGGCACGAACATTATTTCCGTTGAGCTGCTATGCCCAAATAATGCGTGTATGCATTTGACCACTTTTGCAATGAGCTATACTGT</canonical_amplicon>
		<polymorphic_amplicon>GAAAAGCCACTTTATGATCTGTANNNNNNNNNNACCGTTTTGTAGTACTCGTGGAGCTCTATCATATCTGATTTAGTTGGTTCATCGGAAGTCGCSAGAAATCGGAGCCGTCAAACCACTCGATTTTTCACCCATCGTGTATTCAAGACTGGTTAACTGCACTGGTCTGTGGCACGAACATTATTTCCGTTGAGCTGCTATGCCCAAATAATGCGTGTATGCATTTGACCACTTTTGCAATGAGCTATACTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26636</snp_id>
        <super_contig>c002601482.Contig1</super_contig>
        <contig_pos>17885</contig_pos>
        <strand>+</strand>
        <context>AAGTTGGATT[C/T]CGAGGGTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTGCTCAGGAAGTCGTTGATGAGATGAAGGAGAATGAGAAGTTGGATT</left_flank>
        <right_flank>CGAGGGTTTTGAGTGAGTTGGCAACTTTGAATTTGTGAAATTTGAATCTA</right_flank>
        <qual_score>45</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAATTCCAAAAATCAATTATCGATTTTCGTTTTCAGGTGGTGAGACCGCCCATTCCACCCACACATCATCGCATCGCGAAGAAGCTGAACGTCAAATCCGCGACGATCCATACATTCGGGACCTTCTTCATAAAATTTACTTTTTTGATTATGTCATTTTTCCATTTAAGAGAGATGAGTTAGACAAAAAATATCAGACGAACTTCTGGAAAGTTCCAGAAGAATAGGTTTTGAAATTTTGAAGTATATAATAAATTATAAATTTTTTTTTCTTCAAAATGCTTCAAAAACCAGGTTTCTACGATGCCTTTGAGCCGAGTTATAGGCATTTTAAGATTCGAACAGACGCAGACAGTCCGAAGCTAGTGTGTTCGTTGGTCGAGGGAGAGGTGATTCATATGGCAAAAGATATGGAGGATATTGTTGATGAGCAATATGACTGTGATCTGATTGCTCAGGAAGTCGTTGATGAGATGAAGGAGAATGAGAAGTTGGATTTCGAGGGTTTTGAGTGAGTTGGCAACTTTGAATTTGTGAAATTTGAATCTATTTTCTGAAAAAAAAGAAGAATATTTTATGCTGAGCAATGAAAAGATCAGCTTTCTAGGATGCCTTTGAGCCGAGTTATAGCCATTTCAAGATTCGAAGAGACGCAGACAGTTCGACACTATCGTTTCTCTGTGTCTCTCCCTTCAAAACTATAAATGACACTAACTTGGCTTAAAATGGTTGTGGGAAATTAGTTTTTGGTGCATTCTAATAAAATAAATTTTTTATATTTTTTATCAAGCAAAAAAACATTTATCAAAATTCAAAAAATCAGCCTAAAATCATCGTTAGACTATTTAACGACCCGATTTTTAACAATTTCAAAAAAAGCCCGATTTTCTGCTGAAAATGTTTCAAAAACCAAGTTTCTACGATGATTTTGAGCCAAGTAACGGCTATTTTAAGATTTGAAGAGACGCAGATAATCGGACACTCTCATTTCTCTGCGTC</canonical>
            <polymorphic>TAAATTCCAAAAATCAATTATCGATTTTCGTTTTCAGGTGGTGAGACCGCCCATTCCACCCACACATCATCGCATCGCGAAGAAGCTGAACGTCAAATCCGCGACGATCCATACATTCGGGACCTTCTTCATAAAATTTACTTTTTTGATTATGTCATTTTTCCATTTAAGAGAGATGAGTTAGACAAAAAATATCAGACGAACTTCTGGAAAGTTCCAGAAGAATAGGTTTTGAAATTTTGAAGTATATAATAAATTATAAATTTTTTTTTCTTCAAAATGCTTCAAAAACCAGGTTTCTACGATGCCTTTGAGCCGAGTTATAGGCATTTTAAGATTCGAACAGACGCAGACAGTCCGAAGCTAGTGTGTTCGTTGGTCGAGGGAGAGGTGATTCATATGGCAAAAGATATGGAGGATATTGTTGATGAGCAATATGACTGTGATCTGATTGCTCAGGAAGTCGTTGATGAGATGAAGGAGAATGAGAAGTTGGATTYCGAGGGTTTTGAGTGAGTTGGCAACTTTGAATTTGTGAAATTTGAATCTATTTTCTGAAAAAAAAGAAGAATATTTTATGCTGAGCAATGAAAAGATCAGCTTTCTAGGATGCCTTTGAGCCGAGTTATAGCCATTTCAAGATTCGAAGAGACGCAGACAGTTCGACACTATCGTTTCTCTGTGTCTCTCCCTTCAAAACTATAAATGACACTAACTTGGCTTAAAATGGTTGTGGGAAATTAGTTTTTGGTGCATTCTAATAAAATAAATTTTTTATATTTTTTATCAAGCAAAAAAACATTTATCAAAATTCAAAAAATCAGCCTAAAATCATCGTTAGACTATTTAACGACCCGATTTTTAACAATTTCAAAAAAAGCCCGATTTTCTGCTGAAAATGTTTCAAAAACCAAGTTTCTACGATGATTTTGAGCCAAGTAACGGCTATTTTAAGATTTGAAGAGACGCAGATAATCGGACACTCTCATTTCTCTGCGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>336 318 144 120 41 22 19</canonical_bands>
                <polymorphic_bands>336 318 264 41 22 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCAATATGACTGTGATCTGATT</pcr_primer_p1>
		<pcr_primer_p2>ACGATGATTTTAGGCTGATTT</pcr_primer_p2>
		<pcr_amplicon_size>408</pcr_amplicon_size>
		<canonical_amplicon>AGCAATATGACTGTGATCTGATTGCTCAGGAAGTCGTTGATGAGATGAAGGAGAATGAGAAGTTGGATTTCGAGGGTTTTGAGTGAGTTGGCAACTTTGAATTTGTGAAATTTGAATCTATTTTCTGAAAAAAAAGAAGAATATTTTATGCTGAGCAATGAAAAGATCAGCTTTCTAGGATGCCTTTGAGCCGAGTTATAGCCATTTCAAGATTCGAAGAGACGCAGACAGTTCGACACTATCGTTTCTCTGTGTCTCTCCCTTCAAAACTATAAATGACACTAACTTGGCTTAAAATGGTTGTGGGAAATTAGTTTTTGGTGCATTCTAATAAAATAAATTTTTTATATTTTTTATCAAGCAAAAAAACATTTATCAAAATTCAAAAAATCAGCCTAAAATCATCGT</canonical_amplicon>
		<polymorphic_amplicon>AGCAATATGACTGTGATCTGATTGCTCAGGAAGTCGTTGATGAGATGAAGGAGAATGAGAAGTTGGATTYCGAGGGTTTTGAGTGAGTTGGCAACTTTGAATTTGTGAAATTTGAATCTATTTTCTGAAAAAAAAGAAGAATATTTTATGCTGAGCAATGAAAAGATCAGCTTTCTAGGATGCCTTTGAGCCGAGTTATAGCCATTTCAAGATTCGAAGAGACGCAGACAGTTCGACACTATCGTTTCTCTGTGTCTCTCCCTTCAAAACTATAAATGACACTAACTTGGCTTAAAATGGTTGTGGGAAATTAGTTTTTGGTGCATTCTAATAAAATAAATTTTTTATATTTTTTATCAAGCAAAAAAACATTTATCAAAATTCAAAAAATCAGCCTAAAATCATCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26637</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>13103</contig_pos>
        <strand>+</strand>
        <context>AATTATAATT[A/C]TTCCTTATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGTCGTATTTTTGCAGAAAGTGAAACATGTAAAAACCGAAATTATAATT</left_flank>
        <right_flank>TTCCTTATTCGAGCTGAAAATACATATGTTTTCTGCTCCCTGTTTTGGTG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCTGCCCAATTCCATGACATACCTTCAAGGGACTCAAGTCTCAAAGTTATGGTGAATCATTTTCCAACCATTCTTTTATGTTTTGGCATAACTTTTCTCGGGTTATTTTCTACATTTCTCAGAAAAGTGTGACGCTGCTTCAGCACTACGCATTCTTCATGACCAGTACTGTATATGTATTCGTCGACGCTGGGCCGACTGTCGCCGGTGATCCGATCTATATAGAATCCATATAGGATGTATGATCTTTCCAAGAAAACAAAAGTCCCCCAACGACACTCTGCCCATTCGCTGATCGCCACCGAACTTGATCAATGTTTTGATCCTCTTCGCCATTTTTTCCTATTTTCAAAGAGCGTCAAAAGTATCCAACATCCGGGATGCATAAAGAATTCATGAGTGTGGTCCAAATGAGCATATTGATTTTCCATTTTCGTTTATGTTTCACCTGTCGTATTTTTGCAGAAAGTGAAACATGTAAAAACCGAAATTATAATTATTCCTTATTCGAGCTGAAAATACATATGTTTTCTGCTCCCTGTTTTGGTGTGTCCTGGGCAAAAATGAACTCTTCACGGCCGACCTTGATCACTTTTTTGATCCTTTCCAAAGAGCTCCTAACTATTTCCACCTGCGTCTTTGCACATCAGTTTCACCTATATGGCTTTGAAAGACTTTATCACACAATTTCAATGAACTTTATGATATAATAAAACTCAAATCTACTTGTTGTAACAATAAGAAAAAAATCAAATTTATGAAAAGTCAAGATGAGACAGCTCCAACAGAAACATCTCGACGATAACGCAAGAAGCGCCTGAAAGAGCTTTCTCCAAATCGGACGGTCACGTTCTCTTCGAAAAAAATGAGCAATGCATCTCGATAAGGACGATGAACTAAGATCATAGTTAATGAAGACGAAAATCCATGCATGGATATCAAAGAAATTCCGAAATTGGTAAACAACTGTTTGTACCAGCGGAATACGATTGCAAGTTC</canonical>
            <polymorphic>CCCTGCCCAATTCCATGACATACCTTCAAGGGACTCAAGTCTCAAAGTTATGGTGAATCATTTTCCAACCATTCTTTTATGTTTTGGCATAACTTTTCTCGGGTTATTTTCTACATTTCTCAGAAAAGTGTGACGCTGCTTCAGCACTACGCATTCTTCATGACCAGTACTGTATATGTATTCGTCGACGCTGGGCCGACTGTCGCCGGTGATCCGATCTATATAGAATCCATATAGGATGTATGATCTTTCCAAGAAAACAAAAGTCCCCCAACGACACTCTGCCCATTCGCTGATCGCCACCGAACTTGATCAATGTTTTGATCCTCTTCGCCATTTTTTCCTATTTTCAAAGAGCGTCAAAAGTATCCAACATCCGGGATGCATAAAGAATTCATGAGTGTGGTCCAAATGAGCATATTGATTTTCCATTTTCGTTTATGTTTCACCTGTCGTATTTTTGCAGAAAGTGAAACATGTAAAAACCGAAATTATAATTMTTCCTTATTCGAGCTGAAAATACATATGTTTTCTGCTCCCTGTTTTGGTGTGTCCTGGGCAAAAATGAACTCTTCACGGCCGACCTTGATCACTTTTTTGATCCTTTCCAAAGAGCTCCTAACTATTTCCACCTGCGTCTTTGCACATCAGTTTCACCTATATGGCTTTGAAAGACTTTATCACACAATTTCAATGAACTTTATGATATAATAAAACTCAAATCTACTTGTTGTAACAATAAGAAAAAAATCAAATTTATGAAAAGTCAAGATGAGACAGCTCCAACAGAAACATCTCGACGATAACGCAAGAAGCGCCTGAAAGAGCTTTCTCCAAATCGGACGGTCACGTTCTCTTCGAAAAAAATGAGCAATGCATCTCGATAAGGACGATGAACTAAGATCATAGTTAATGAAGACGAAAATCCATGCATGGATATCAAAGAAATTCCGAAATTGGTAAACAACTGTTTGTACCAGCGGAATACGATTGCAAGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGTTTCACCTGTCGTATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATTGTGTGATAAAGTCTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATGTTTCACCTGTCGTATTTTTGCAGAAAGTGAAACATGTAAAAACCGAAATTATAATTATTCCTTATTCGAGCTGAAAATACATATGTTTTCTGCTCCCTGTTTTGGTGTGTCCTGGGCAAAAATGAACTCTTCACGGCCGACCTTGATCACTTTTTTGATCCTTTCCAAAGAGCTCCTAACTATTTCCACCTGCGTCTTTGCACATCAGTTTCACCTATATGGCTTTGAAAGACTTTATCACACAATTT</canonical_amplicon>
		<polymorphic_amplicon>TATGTTTCACCTGTCGTATTTTTGCAGAAAGTGAAACATGTAAAAACCGAAATTATAATTMTTCCTTATTCGAGCTGAAAATACATATGTTTTCTGCTCCCTGTTTTGGTGTGTCCTGGGCAAAAATGAACTCTTCACGGCCGACCTTGATCACTTTTTTGATCCTTTCCAAAGAGCTCCTAACTATTTCCACCTGCGTCTTTGCACATCAGTTTCACCTATATGGCTTTGAAAGACTTTATCACACAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26638</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>17019</contig_pos>
        <strand>+</strand>
        <context>TGTGCTTAAA[A/T]TTTTGTCTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGCTCGGCTGGCCTGACTTGTGAGACTGCTTCTGGATTGTGTGCTTAAA</left_flank>
        <right_flank>TTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATAGTTGGTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCGAAACCTGCCCAACTAATCACTCGAATGCTGATGGACTTGGAGAGAACATTTTCTTTTCCTACAGTGCAACTGACAAAAACAGTCTTGACTACTATGTGAGTTTCGAATGATTTGAAATTTTATAACTGTGTGATTTTTTCAGGGAGCAAGAGCCTCACAGTTGTGGGAAGAGGAGTTCCAACAATATGGATGGGATTCCACTACGATGGATGACAACGCCTCCAACATCAAAGACGCTACTCAAATGGCTTGGGCTGAGACTGGTTTGATTGGATGCGGGTTAAAGTATGTGGAAAGGACAAGTCTGGGGCAAGCCAGTTCAAGTATGTTGTGGTGTGCCATTATAAGAAACCGTAAGTAACTCTTGTTTTAAAATAGTAATGTATAATTTCAGAGGAAACAAAATCGGTGCTGAGATTTATCAGCCAGGAGACACCTGCACTGCTTGCTCGGCTGGCCTGACTTGTGAGACTGCTTCTGGATTGTGTGCTTAAACTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATAGTTGGTTCATAACTGCCTTTAAGAATTCGTTATTACAAAAATAGAGTTCCATAAAAAATTATTCCAAAACCGCCTTCATCATGTCGTCAAAAACTTTTTGACGTTTGGGTTGAAATGTTCCAAAAGTTTGAATCAAAACGTTATCTCAATGGCTCTTCTGAACTCAAGCTAAATCAAGCTGTGTGTTGATCCGAATTAGAGCAGATGAACAAACCCACGCGGTTTTTTTCTGAATTCAAACGAATATAAAACTGGGAAGGATACATGAAAAAAAATCAAAAGGGCATATAAAAAAGTAAAGTATCTTGAAACAACTGTCACTCCTTTTTATACCATTTTTTATCGCCCAACTTTCCGTGAATTCCTCAAACGACCCGGTTCCAAAATCATGGACTTTTTTTTTGGCACGTAAAAAGTCCGGTGATGTGAACGAATTCCAAGTAACGACAGCTTCAGAG</canonical>
            <polymorphic>GCCGAAACCTGCCCAACTAATCACTCGAATGCTGATGGACTTGGAGAGAACATTTTCTTTTCCTACAGTGCAACTGACAAAAACAGTCTTGACTACTATGTGAGTTTCGAATGATTTGAAATTTTATAACTGTGTGATTTTTTCAGGGAGCAAGAGCCTCACAGTTGTGGGAAGAGGAGTTCCAACAATATGGATGGGATTCCACTACGATGGATGACAACGCCTCCAACATCAAAGACGCTACTCAAATGGCTTGGGCTGAGACTGGTTTGATTGGATGCGGGTTAAAGTATGTGGAAAGGACAAGTCTGGGGCAAGCCAGTTCAAGTATGTTGTGGTGTGCCATTATAAGAAACCGTAAGTAACTCTTGTTTTAAAATAGTAATGTATAATTTCAGAGGAAACAAAATCGGTGCTGAGATTTATCAGCCAGGAGACACCTGCACTGCTTGCTCGGCTGGCCTGACTTGTGAGACTGCTTCTGGATTGTGTGCTTAAAWTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATAGTTGGTTCATAACTGCCTTTAAGAATTCGTTATTACAAAAATAGAGTTCCATAAAAAATTATTCCAAAACCGCCTTCATCATGTCGTCAAAAACTTTTTGACGTTTGGGTTGAAATGTTCCAAAAGTTTGAATCAAAACGTTATCTCAATGGCTCTTCTGAACTCAAGCTAAATCAAGCTGTGTGTTGATCCGAATTAGAGCAGATGAACAAACCCACGCGGTTTTTTTCTGAATTCAAACGAATATAAAACTGGGAAGGATACATGAAAAAAAATCAAAAGGGCATATAAAAAAGTAAAGTATCTTGAAACAACTGTCACTCCTTTTTATACCATTTTTTATCGCCCAACTTTCCGTGAATTCCTCAAACGACCCGGTTCCAAAATCATGGACTTTTTTTTTGGCACGTAAAAAGTCCGGTGATGTGAACGAATTCCAAGTAACGACAGCTTCAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTCAAGTATGTTGTGGTGT</pcr_primer_p1>
		<pcr_primer_p2>TTCTTAAAGGCAGTTATGAACC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGTTCAAGTATGTTGTGGTGTGCCATTATAAGAAACCGTAAGTAACTCTTGTTTTAAAATAGTAATGTATAATTTCAGAGGAAACAAAATCGGTGCTGAGATTTATCAGCCAGGAGACACCTGCACTGCTTGCTCGGCTGGCCTGACTTGTGAGACTGCTTCTGGATTGTGTGCTTAAACTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATAGTTGGTTCATAACTGCCTTTAAGAA</canonical_amplicon>
		<polymorphic_amplicon>CAGTTCAAGTATGTTGTGGTGTGCCATTATAAGAAACCGTAAGTAACTCTTGTTTTAAAATAGTAATGTATAATTTCAGAGGAAACAAAATCGGTGCTGAGATTTATCAGCCAGGAGACACCTGCACTGCTTGCTCGGCTGGCCTGACTTGTGAGACTGCTTCTGGATTGTGTGCTTAAAWTTTTGTCTTGTTTTTGTTTTTTTGTTTAAAGTAATATAAATAGTTGGTTCATAACTGCCTTTAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26639</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>34431</contig_pos>
        <strand></strand>
        <context>GGATCTCAAG[T/A]CATTGTGAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGAAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAG</left_flank>
        <right_flank>CATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTTGAACATGTCGTTATGAGACGGGTCCTTTGGACAAACCTTCACTCCACACCCAATTGAGCCTGTCTCAGCCCAAACCATCTGAGTTGCCTCTTTTATGTTGGAGGCGTTATCATCCATCGTAGTGGAATTCCATCCGAATTTTACGAACTCCTCTTCCCAAACTTGCGAGGATCTTGGTCCCTGAAAAATTAAATTTTTTTAAAATATCAATCCTTTCGATACTCACAAAGTAATCTACAGTGTTTTTGTCAGTTGAATCGTATCCGAAGTAGATGTTCTCTCCAGATGGTTGGGAGAGTGATTCTGGACAGGTATTGGCATAGTCTTGGGCAGAGGTGGCAAGAGAATCGTCCCATTTCTAAATAAAATTTCAGAAGTATCAAACATTAAATAATTATAACCTAACCAGCTTGCGCATGTTGGTTGCTGGTGGTTTCGGTTGTTTGAAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAGTCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTATTATTTGCGTTTTAGTAGACAATGATAAGAAATCCTGCAGAAGAGTAAGCCTCTTGCCTTGTCAGGAGCATTGATTTGGTATAGTTGCTGATAAAAGACTCGAAGTATTTCGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGG</canonical>
            <polymorphic>TACTTGAACATGTCGTTATGAGACGGGTCCTTTGGACAAACCTTCACTCCACACCCAATTGAGCCTGTCTCAGCCCAAACCATCTGAGTTGCCTCTTTTATGTTGGAGGCGTTATCATCCATCGTAGTGGAATTCCATCCGAATTTTACGAACTCCTCTTCCCAAACTTGCGAGGATCTTGGTCCCTGAAAAATTAAATTTTTTTAAAATATCAATCCTTTCGATACTCACAAAGTAATCTACAGTGTTTTTGTCAGTTGAATCGTATCCGAAGTAGATGTTCTCTCCAGATGGTTGGGAGAGTGATTCTGGACAGGTATTGGCATAGTCTTGGGCAGAGGTGGCAAGAGAATCGTCCCATTTCTAAATAAAATTTCAGAAGTATCAAACATTAAATAATTATAACCTAACCAGCTTGCGCATGTTGGTTGCTGGTGGTTTCGGTTGTTTGAAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAGWCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTATTATTTGCGTTTTAGTAGACAATGATAAGAAATCCTGCAGAAGAGTAAGCCTCTTGCCTTGTCAGGAGCATTGATTTGGTATAGTTGCTGATAAAAGACTCGAAGTATTTCGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTGTTTGAAAGCATCATAA</pcr_primer_p1>
		<pcr_primer_p2>AAATATGTTGACGTCCTTTTACA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGTTGTTTGAAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAGTCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTGTTTGAAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAGWCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26640</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>34445</contig_pos>
        <strand></strand>
        <context>TGTGAGCCCG[A/G]AGTATATGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCATCATAGGTTCCCATAGCAATATCGGATCTCAAGTCATTGTGAGCCCG</left_flank>
        <right_flank>AGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTATGAGACGGGTCCTTTGGACAAACCTTCACTCCACACCCAATTGAGCCTGTCTCAGCCCAAACCATCTGAGTTGCCTCTTTTATGTTGGAGGCGTTATCATCCATCGTAGTGGAATTCCATCCGAATTTTACGAACTCCTCTTCCCAAACTTGCGAGGATCTTGGTCCCTGAAAAATTAAATTTTTTTAAAATATCAATCCTTTCGATACTCACAAAGTAATCTACAGTGTTTTTGTCAGTTGAATCGTATCCGAAGTAGATGTTCTCTCCAGATGGTTGGGAGAGTGATTCTGGACAGGTATTGGCATAGTCTTGGGCAGAGGTGGCAAGAGAATCGTCCCATTTCTAAATAAAATTTCAGAAGTATCAAACATTAAATAATTATAACCTAACCAGCTTGCGCATGTTGGTTGCTGGTGGTTTCGGTTGTTTGAAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAGTCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTATTATTTGCGTTTTAGTAGACAATGATAAGAAATCCTGCAGAAGAGTAAGCCTCTTGCCTTGTCAGGAGCATTGATTTGGTATAGTTGCTGATAAAAGACTCGAAGTATTTCGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGGAAAACTAGGACCAC</canonical>
            <polymorphic>GTTATGAGACGGGTCCTTTGGACAAACCTTCACTCCACACCCAATTGAGCCTGTCTCAGCCCAAACCATCTGAGTTGCCTCTTTTATGTTGGAGGCGTTATCATCCATCGTAGTGGAATTCCATCCGAATTTTACGAACTCCTCTTCCCAAACTTGCGAGGATCTTGGTCCCTGAAAAATTAAATTTTTTTAAAATATCAATCCTTTCGATACTCACAAAGTAATCTACAGTGTTTTTGTCAGTTGAATCGTATCCGAAGTAGATGTTCTCTCCAGATGGTTGGGAGAGTGATTCTGGACAGGTATTGGCATAGTCTTGGGCAGAGGTGGCAAGAGAATCGTCCCATTTCTAAATAAAATTTCAGAAGTATCAAACATTAAATAATTATAACCTAACCAGCTTGCGCATGTTGGTTGCTGGTGGTTTCGGTTGTTTGAAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAGTCATTGTGAGCCCGRAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTATTATTTGCGTTTTAGTAGACAATGATAAGAAATCCTGCAGAAGAGTAAGCCTCTTGCCTTGTCAGGAGCATTGATTTGGTATAGTTGCTGATAAAAGACTCGAAGTATTTCGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGGAAAACTAGGACCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGCATCATAACCATCATAGG</pcr_primer_p1>
		<pcr_primer_p2>CAGAGGCTAGAAAAATATGTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAGTCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTG</canonical_amplicon>
		<polymorphic_amplicon>AAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAGTCATTGTGAGCCCGRAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26641</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>34513</contig_pos>
        <strand></strand>
        <context>AGAATACAGA[A/G]AGCGAAGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGA</left_flank>
        <right_flank>AGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGAGTTGCCTCTTTTATGTTGGAGGCGTTATCATCCATCGTAGTGGAATTCCATCCGAATTTTACGAACTCCTCTTCCCAAACTTGCGAGGATCTTGGTCCCTGAAAAATTAAATTTTTTTAAAATATCAATCCTTTCGATACTCACAAAGTAATCTACAGTGTTTTTGTCAGTTGAATCGTATCCGAAGTAGATGTTCTCTCCAGATGGTTGGGAGAGTGATTCTGGACAGGTATTGGCATAGTCTTGGGCAGAGGTGGCAAGAGAATCGTCCCATTTCTAAATAAAATTTCAGAAGTATCAAACATTAAATAATTATAACCTAACCAGCTTGCGCATGTTGGTTGCTGGTGGTTTCGGTTGTTTGAAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAGTCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTATTATTTGCGTTTTAGTAGACAATGATAAGAAATCCTGCAGAAGAGTAAGCCTCTTGCCTTGTCAGGAGCATTGATTTGGTATAGTTGCTGATAAAAGACTCGAAGTATTTCGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAAAGAGTTGAAAGTTAATTGAAACAATATCAGTTCGA</canonical>
            <polymorphic>TCTGAGTTGCCTCTTTTATGTTGGAGGCGTTATCATCCATCGTAGTGGAATTCCATCCGAATTTTACGAACTCCTCTTCCCAAACTTGCGAGGATCTTGGTCCCTGAAAAATTAAATTTTTTTAAAATATCAATCCTTTCGATACTCACAAAGTAATCTACAGTGTTTTTGTCAGTTGAATCGTATCCGAAGTAGATGTTCTCTCCAGATGGTTGGGAGAGTGATTCTGGACAGGTATTGGCATAGTCTTGGGCAGAGGTGGCAAGAGAATCGTCCCATTTCTAAATAAAATTTCAGAAGTATCAAACATTAAATAATTATAACCTAACCAGCTTGCGCATGTTGGTTGCTGGTGGTTTCGGTTGTTTGAAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAGTCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGARAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTATTATTTGCGTTTTAGTAGACAATGATAAGAAATCCTGCAGAAGAGTAAGCCTCTTGCCTTGTCAGGAGCATTGATTTGGTATAGTTGCTGATAAAAGACTCGAAGTATTTCGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAAAGAGTTGAAAGTTAATTGAAACAATATCAGTTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGCATCATAACCATCATAGG</pcr_primer_p1>
		<pcr_primer_p2>CAGAGGCTAGAAAAATATGTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAGTCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTG</canonical_amplicon>
		<polymorphic_amplicon>AAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAGTCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGARAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26642</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>34528</contig_pos>
        <strand></strand>
        <context>AAGAATTTCA[T/A]AATTTCTAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCA</left_flank>
        <right_flank>AATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATGTTGGAGGCGTTATCATCCATCGTAGTGGAATTCCATCCGAATTTTACGAACTCCTCTTCCCAAACTTGCGAGGATCTTGGTCCCTGAAAAATTAAATTTTTTTAAAATATCAATCCTTTCGATACTCACAAAGTAATCTACAGTGTTTTTGTCAGTTGAATCGTATCCGAAGTAGATGTTCTCTCCAGATGGTTGGGAGAGTGATTCTGGACAGGTATTGGCATAGTCTTGGGCAGAGGTGGCAAGAGAATCGTCCCATTTCTAAATAAAATTTCAGAAGTATCAAACATTAAATAATTATAACCTAACCAGCTTGCGCATGTTGGTTGCTGGTGGTTTCGGTTGTTTGAAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAGTCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTATTATTTGCGTTTTAGTAGACAATGATAAGAAATCCTGCAGAAGAGTAAGCCTCTTGCCTTGTCAGGAGCATTGATTTGGTATAGTTGCTGATAAAAGACTCGAAGTATTTCGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAAAGAGTTGAAAGTTAATTGAAACAATATCAGTTCGATTTTCATGTAACAAA</canonical>
            <polymorphic>TTATGTTGGAGGCGTTATCATCCATCGTAGTGGAATTCCATCCGAATTTTACGAACTCCTCTTCCCAAACTTGCGAGGATCTTGGTCCCTGAAAAATTAAATTTTTTTAAAATATCAATCCTTTCGATACTCACAAAGTAATCTACAGTGTTTTTGTCAGTTGAATCGTATCCGAAGTAGATGTTCTCTCCAGATGGTTGGGAGAGTGATTCTGGACAGGTATTGGCATAGTCTTGGGCAGAGGTGGCAAGAGAATCGTCCCATTTCTAAATAAAATTTCAGAAGTATCAAACATTAAATAATTATAACCTAACCAGCTTGCGCATGTTGGTTGCTGGTGGTTTCGGTTGTTTGAAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAGTCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCAWAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTATTATTTGCGTTTTAGTAGACAATGATAAGAAATCCTGCAGAAGAGTAAGCCTCTTGCCTTGTCAGGAGCATTGATTTGGTATAGTTGCTGATAAAAGACTCGAAGTATTTCGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAAAGAGTTGAAAGTTAATTGAAACAATATCAGTTCGATTTTCATGTAACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGCATCATAACCATCATAGG</pcr_primer_p1>
		<pcr_primer_p2>CAGAGGCTAGAAAAATATGTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAGTCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTG</canonical_amplicon>
		<polymorphic_amplicon>AAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAGTCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCAWAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26643</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>34572</contig_pos>
        <strand></strand>
        <context>TGTCCTTTTA[C/T]ATGAAAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTA</left_flank>
        <right_flank>ATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTACGAACTCCTCTTCCCAAACTTGCGAGGATCTTGGTCCCTGAAAAATTAAATTTTTTTAAAATATCAATCCTTTCGATACTCACAAAGTAATCTACAGTGTTTTTGTCAGTTGAATCGTATCCGAAGTAGATGTTCTCTCCAGATGGTTGGGAGAGTGATTCTGGACAGGTATTGGCATAGTCTTGGGCAGAGGTGGCAAGAGAATCGTCCCATTTCTAAATAAAATTTCAGAAGTATCAAACATTAAATAATTATAACCTAACCAGCTTGCGCATGTTGGTTGCTGGTGGTTTCGGTTGTTTGAAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAGTCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTATTATTTGCGTTTTAGTAGACAATGATAAGAAATCCTGCAGAAGAGTAAGCCTCTTGCCTTGTCAGGAGCATTGATTTGGTATAGTTGCTGATAAAAGACTCGAAGTATTTCGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAAAGAGTTGAAAGTTAATTGAAACAATATCAGTTCGATTTTCATGTAACAAATTTCTTATTATTTATTTTGGACCGTCTGGAATATTTACATTTTC</canonical>
            <polymorphic>AATTTTACGAACTCCTCTTCCCAAACTTGCGAGGATCTTGGTCCCTGAAAAATTAAATTTTTTTAAAATATCAATCCTTTCGATACTCACAAAGTAATCTACAGTGTTTTTGTCAGTTGAATCGTATCCGAAGTAGATGTTCTCTCCAGATGGTTGGGAGAGTGATTCTGGACAGGTATTGGCATAGTCTTGGGCAGAGGTGGCAAGAGAATCGTCCCATTTCTAAATAAAATTTCAGAAGTATCAAACATTAAATAATTATAACCTAACCAGCTTGCGCATGTTGGTTGCTGGTGGTTTCGGTTGTTTGAAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAGTCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTAYATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTATTATTTGCGTTTTAGTAGACAATGATAAGAAATCCTGCAGAAGAGTAAGCCTCTTGCCTTGTCAGGAGCATTGATTTGGTATAGTTGCTGATAAAAGACTCGAAGTATTTCGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAAAGAGTTGAAAGTTAATTGAAACAATATCAGTTCGATTTTCATGTAACAAATTTCTTATTATTTATTTTGGACCGTCTGGAATATTTACATTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>422 280 220 54 24</canonical_bands>
                <polymorphic_bands>422 280 244 54</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGCATCATAACCATCATAGG</pcr_primer_p1>
		<pcr_primer_p2>CAGAGGCTAGAAAAATATGTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAGTCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTG</canonical_amplicon>
		<polymorphic_amplicon>AAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAGTCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTAYATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26644</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>34585</contig_pos>
        <strand></strand>
        <context>GAAAAAAACA[C/T]TTCATCTTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACA</left_flank>
        <right_flank>TTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTGTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTCTTCCCAAACTTGCGAGGATCTTGGTCCCTGAAAAATTAAATTTTTTTAAAATATCAATCCTTTCGATACTCACAAAGTAATCTACAGTGTTTTTGTCAGTTGAATCGTATCCGAAGTAGATGTTCTCTCCAGATGGTTGGGAGAGTGATTCTGGACAGGTATTGGCATAGTCTTGGGCAGAGGTGGCAAGAGAATCGTCCCATTTCTAAATAAAATTTCAGAAGTATCAAACATTAAATAATTATAACCTAACCAGCTTGCGCATGTTGGTTGCTGGTGGTTTCGGTTGTTTGAAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAGTCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTATTATTTGCGTTTTAGTAGACAATGATAAGAAATCCTGCAGAAGAGTAAGCCTCTTGCCTTGTCAGGAGCATTGATTTGGTATAGTTGCTGATAAAAGACTCGAAGTATTTCGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAAAGAGTTGAAAGTTAATTGAAACAATATCAGTTCGATTTTCATGTAACAAATTTCTTATTATTTATTTTGGACCGTCTGGAATATTTACATTTTCAGGTTTACCTGGA</canonical>
            <polymorphic>CCTCTTCCCAAACTTGCGAGGATCTTGGTCCCTGAAAAATTAAATTTTTTTAAAATATCAATCCTTTCGATACTCACAAAGTAATCTACAGTGTTTTTGTCAGTTGAATCGTATCCGAAGTAGATGTTCTCTCCAGATGGTTGGGAGAGTGATTCTGGACAGGTATTGGCATAGTCTTGGGCAGAGGTGGCAAGAGAATCGTCCCATTTCTAAATAAAATTTCAGAAGTATCAAACATTAAATAATTATAACCTAACCAGCTTGCGCATGTTGGTTGCTGGTGGTTTCGGTTGTTTGAAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAGTCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACAYTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTATTATTTGCGTTTTAGTAGACAATGATAAGAAATCCTGCAGAAGAGTAAGCCTCTTGCCTTGTCAGGAGCATTGATTTGGTATAGTTGCTGATAAAAGACTCGAAGTATTTCGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAAAGAGTTGAAAGTTAATTGAAACAATATCAGTTCGATTTTCATGTAACAAATTTCTTATTATTTATTTTGGACCGTCTGGAATATTTACATTTTCAGGTTTACCTGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>196 141 94 86 78 76 74 70 58 43 38 21 17 6 2</canonical_bands>
                <polymorphic_bands>217 141 94 86 78 76 74 70 58 43 38 17 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATAGCAATATCGGATCTCAA</pcr_primer_p1>
		<pcr_primer_p2>ATAGAGGCTAGAAGCCAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CATAGCAATATCGGATCTCAAGTCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTAT</canonical_amplicon>
		<polymorphic_amplicon>CATAGCAATATCGGATCTCAAGTCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACAYTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26645</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>34665</contig_pos>
        <strand></strand>
        <context>CTCTATTATT[T/C]GCGTTTTAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTATTATT</left_flank>
        <right_flank>GCGTTTTAGTAGACAATGATAAGAAATCCTGCAGAAGAGTAAGCCTCTTG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAATCTACAGTGTTTTTGTCAGTTGAATCGTATCCGAAGTAGATGTTCTCTCCAGATGGTTGGGAGAGTGATTCTGGACAGGTATTGGCATAGTCTTGGGCAGAGGTGGCAAGAGAATCGTCCCATTTCTAAATAAAATTTCAGAAGTATCAAACATTAAATAATTATAACCTAACCAGCTTGCGCATGTTGGTTGCTGGTGGTTTCGGTTGTTTGAAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAGTCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTATTATTTGCGTTTTAGTAGACAATGATAAGAAATCCTGCAGAAGAGTAAGCCTCTTGCCTTGTCAGGAGCATTGATTTGGTATAGTTGCTGATAAAAGACTCGAAGTATTTCGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAAAGAGTTGAAAGTTAATTGAAACAATATCAGTTCGATTTTCATGTAACAAATTTCTTATTATTTATTTTGGACCGTCTGGAATATTTACATTTTCAGGTTTACCTGGATTCTCGAAAACCAATGAAAATCTCGGCGACTGGAAATTCAAATAAACAAAATTTTTTCTGTCTTTCAAAAATTTTTTGGG</canonical>
            <polymorphic>GTAATCTACAGTGTTTTTGTCAGTTGAATCGTATCCGAAGTAGATGTTCTCTCCAGATGGTTGGGAGAGTGATTCTGGACAGGTATTGGCATAGTCTTGGGCAGAGGTGGCAAGAGAATCGTCCCATTTCTAAATAAAATTTCAGAAGTATCAAACATTAAATAATTATAACCTAACCAGCTTGCGCATGTTGGTTGCTGGTGGTTTCGGTTGTTTGAAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAGTCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTATTATTYGCGTTTTAGTAGACAATGATAAGAAATCCTGCAGAAGAGTAAGCCTCTTGCCTTGTCAGGAGCATTGATTTGGTATAGTTGCTGATAAAAGACTCGAAGTATTTCGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAAAGAGTTGAAAGTTAATTGAAACAATATCAGTTCGATTTTCATGTAACAAATTTCTTATTATTTATTTTGGACCGTCTGGAATATTTACATTTTCAGGTTTACCTGGATTCTCGAAAACCAATGAAAATCTCGGCGACTGGAAATTCAAATAAACAAAATTTTTTCTGTCTTTCAAAAATTTTTTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGACGTCAACATATTTTTCTA</pcr_primer_p1>
		<pcr_primer_p2>AACTGATCCGAGCATTCATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGGACGTCAACATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTATTATTTGCGTTTTAGTAGACAATGATAAGAAATCCTGCAGAAGAGTAAGCCTCTTGCCTTGTCAGGAGCATTGATTTGGTATAGTTGCTGATAAAAGACTCGAAGTATTTCGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTT</canonical_amplicon>
		<polymorphic_amplicon>AAGGACGTCAACATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTATTATTYGCGTTTTAGTAGACAATGATAAGAAATCCTGCAGAAGAGTAAGCCTCTTGCCTTGTCAGGAGCATTGATTTGGTATAGTTGCTGATAAAAGACTCGAAGTATTTCGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26646</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>34769</contig_pos>
        <strand></strand>
        <context>TCGAAGTATT[T/C]CGAAAACATC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGTCAGGAGCATTGATTTGGTATAGTTGCTGATAAAAGACTCGAAGTATT</left_flank>
        <right_flank>CGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAG</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGTGGCAAGAGAATCGTCCCATTTCTAAATAAAATTTCAGAAGTATCAAACATTAAATAATTATAACCTAACCAGCTTGCGCATGTTGGTTGCTGGTGGTTTCGGTTGTTTGAAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAGTCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTATTATTTGCGTTTTAGTAGACAATGATAAGAAATCCTGCAGAAGAGTAAGCCTCTTGCCTTGTCAGGAGCATTGATTTGGTATAGTTGCTGATAAAAGACTCGAAGTATTTCGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAAAGAGTTGAAAGTTAATTGAAACAATATCAGTTCGATTTTCATGTAACAAATTTCTTATTATTTATTTTGGACCGTCTGGAATATTTACATTTTCAGGTTTACCTGGATTCTCGAAAACCAATGAAAATCTCGGCGACTGGAAATTCAAATAAACAAAATTTTTTCTGTCTTTCAAAAATTTTTTGGGGTCAACAGAAAAAAATGGACGATTTTTCTGACAAGAAAAAAATTTTTCAAGAAAAGTGTCCATAAAAATAGTTCTTTCACAAAAAATGTGAAAACACTTCTGAA</canonical>
            <polymorphic>AGGTGGCAAGAGAATCGTCCCATTTCTAAATAAAATTTCAGAAGTATCAAACATTAAATAATTATAACCTAACCAGCTTGCGCATGTTGGTTGCTGGTGGTTTCGGTTGTTTGAAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAGTCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTATTATTTGCGTTTTAGTAGACAATGATAAGAAATCCTGCAGAAGAGTAAGCCTCTTGCCTTGTCAGGAGCATTGATTTGGTATAGTTGCTGATAAAAGACTCGAAGTATTYCGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAAAGAGTTGAAAGTTAATTGAAACAATATCAGTTCGATTTTCATGTAACAAATTTCTTATTATTTATTTTGGACCGTCTGGAATATTTACATTTTCAGGTTTACCTGGATTCTCGAAAACCAATGAAAATCTCGGCGACTGGAAATTCAAATAAACAAAATTTTTTCTGTCTTTCAAAAATTTTTTGGGGTCAACAGAAAAAAATGGACGATTTTTCTGACAAGAAAAAAATTTTTCAAGAAAAGTGTCCATAAAAATAGTTCTTTCACAAAAAATGTGAAAACACTTCTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>504 252 244</canonical_bands>
                <polymorphic_bands>748 252</polymorphic_bands>
            </assay>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>286 241 205 179 79 10</canonical_bands>
                <polymorphic_bands>286 251 205 179 79</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGACGTCAACATATTTTTCTA</pcr_primer_p1>
		<pcr_primer_p2>AACTGATCCGAGCATTCATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGGACGTCAACATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTATTATTTGCGTTTTAGTAGACAATGATAAGAAATCCTGCAGAAGAGTAAGCCTCTTGCCTTGTCAGGAGCATTGATTTGGTATAGTTGCTGATAAAAGACTCGAAGTATTTCGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTT</canonical_amplicon>
		<polymorphic_amplicon>AAGGACGTCAACATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTATTATTTGCGTTTTAGTAGACAATGATAAGAAATCCTGCAGAAGAGTAAGCCTCTTGCCTTGTCAGGAGCATTGATTTGGTATAGTTGCTGATAAAAGACTCGAAGTATTYCGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26647</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>34821</contig_pos>
        <strand></strand>
        <context>TATTCTCAGC[T/C]TCTTCAGATG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGC</left_flank>
        <right_flank>TCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATC</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTAAATAATTATAACCTAACCAGCTTGCGCATGTTGGTTGCTGGTGGTTTCGGTTGTTTGAAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAGTCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTATTATTTGCGTTTTAGTAGACAATGATAAGAAATCCTGCAGAAGAGTAAGCCTCTTGCCTTGTCAGGAGCATTGATTTGGTATAGTTGCTGATAAAAGACTCGAAGTATTTCGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAAAGAGTTGAAAGTTAATTGAAACAATATCAGTTCGATTTTCATGTAACAAATTTCTTATTATTTATTTTGGACCGTCTGGAATATTTACATTTTCAGGTTTACCTGGATTCTCGAAAACCAATGAAAATCTCGGCGACTGGAAATTCAAATAAACAAAATTTTTTCTGTCTTTCAAAAATTTTTTGGGGTCAACAGAAAAAAATGGACGATTTTTCTGACAAGAAAAAAATTTTTCAAGAAAAGTGTCCATAAAAATAGTTCTTTCACAAAAAATGTGAAAACACTTCTGAAATTTCAAAATTTTTTCAAATTTGAAGAACCCGGGCCCGTCGGGCCGGTTCCT</canonical>
            <polymorphic>ATTAAATAATTATAACCTAACCAGCTTGCGCATGTTGGTTGCTGGTGGTTTCGGTTGTTTGAAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAGTCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTATTATTTGCGTTTTAGTAGACAATGATAAGAAATCCTGCAGAAGAGTAAGCCTCTTGCCTTGTCAGGAGCATTGATTTGGTATAGTTGCTGATAAAAGACTCGAAGTATTTCGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCYTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAAAGAGTTGAAAGTTAATTGAAACAATATCAGTTCGATTTTCATGTAACAAATTTCTTATTATTTATTTTGGACCGTCTGGAATATTTACATTTTCAGGTTTACCTGGATTCTCGAAAACCAATGAAAATCTCGGCGACTGGAAATTCAAATAAACAAAATTTTTTCTGTCTTTCAAAAATTTTTTGGGGTCAACAGAAAAAAATGGACGATTTTTCTGACAAGAAAAAAATTTTTCAAGAAAAGTGTCCATAAAAATAGTTCTTTCACAAAAAATGTGAAAACACTTCTGAAATTTCAAAATTTTTTCAAATTTGAAGAACCCGGGCCCGTCGGGCCGGTTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>502 474 24</canonical_bands>
                <polymorphic_bands>976 24</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>352 186 132 111 95 55 24 20 9 9 7</canonical_bands>
                <polymorphic_bands>352 243 186 95 55 24 20 9 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAAAACATCACTTCGGTAT</pcr_primer_p1>
		<pcr_primer_p2>TCGAACTGATATTGTTTCAATTA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAAAGAGTTGAAAGTTAATTGAAACAATATCAGTTCGA</canonical_amplicon>
		<polymorphic_amplicon>CGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCYTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAAAGAGTTGAAAGTTAATTGAAACAATATCAGTTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26648</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>34866</contig_pos>
        <strand></strand>
        <context>TGCTTAAGAC[A/G]CCATCGTYCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGAC</left_flank>
        <right_flank>CCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAAT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTTTCGGTTGTTTGAAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAGTCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTATTATTTGCGTTTTAGTAGACAATGATAAGAAATCCTGCAGAAGAGTAAGCCTCTTGCCTTGTCAGGAGCATTGATTTGGTATAGTTGCTGATAAAAGACTCGAAGTATTTCGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAAAGAGTTGAAAGTTAATTGAAACAATATCAGTTCGATTTTCATGTAACAAATTTCTTATTATTTATTTTGGACCGTCTGGAATATTTACATTTTCAGGTTTACCTGGATTCTCGAAAACCAATGAAAATCTCGGCGACTGGAAATTCAAATAAACAAAATTTTTTCTGTCTTTCAAAAATTTTTTGGGGTCAACAGAAAAAAATGGACGATTTTTCTGACAAGAAAAAAATTTTTCAAGAAAAGTGTCCATAAAAATAGTTCTTTCACAAAAAATGTGAAAACACTTCTGAAATTTCAAAATTTTTTCAAATTTGAAGAACCCGGGCCCGTCGGGCCGGTTCCTGATTTTGCAAGTATGGCTTCAATATTGTTTTCTCAACTATCAACA</canonical>
            <polymorphic>TGGTTTCGGTTGTTTGAAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAGTCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTATTATTTGCGTTTTAGTAGACAATGATAAGAAATCCTGCAGAAGAGTAAGCCTCTTGCCTTGTCAGGAGCATTGATTTGGTATAGTTGCTGATAAAAGACTCGAAGTATTTCGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACRCCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAAAGAGTTGAAAGTTAATTGAAACAATATCAGTTCGATTTTCATGTAACAAATTTCTTATTATTTATTTTGGACCGTCTGGAATATTTACATTTTCAGGTTTACCTGGATTCTCGAAAACCAATGAAAATCTCGGCGACTGGAAATTCAAATAAACAAAATTTTTTCTGTCTTTCAAAAATTTTTTGGGGTCAACAGAAAAAAATGGACGATTTTTCTGACAAGAAAAAAATTTTTCAAGAAAAGTGTCCATAAAAATAGTTCTTTCACAAAAAATGTGAAAACACTTCTGAAATTTCAAAATTTTTTCAAATTTGAAGAACCCGGGCCCGTCGGGCCGGTTCCTGATTTTGCAAGTATGGCTTCAATATTGTTTTCTCAACTATCAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>279 196 105 86 78 74 72 43 21 21 11 6 6 2</canonical_bands>
                <polymorphic_bands>279 196 164 105 74 72 43 21 21 11 6 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACATCACTTCGGTATAGACAA</pcr_primer_p1>
		<pcr_primer_p2>ACATGAAAATCGAACTGATATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAAAGAGTTGAAAGTTAATTGAAACAATATCAGTTCGATTTTCATGT</canonical_amplicon>
		<polymorphic_amplicon>AAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACRCCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAAAGAGTTGAAAGTTAATTGAAACAATATCAGTTCGATTTTCATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26649</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>34874</contig_pos>
        <strand></strand>
        <context>ACRCCATCGT[T/C]CAAGTTGACA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGT</left_flank>
        <right_flank>CAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGTTTGAAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAGTCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTATTATTTGCGTTTTAGTAGACAATGATAAGAAATCCTGCAGAAGAGTAAGCCTCTTGCCTTGTCAGGAGCATTGATTTGGTATAGTTGCTGATAAAAGACTCGAAGTATTTCGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAAAGAGTTGAAAGTTAATTGAAACAATATCAGTTCGATTTTCATGTAACAAATTTCTTATTATTTATTTTGGACCGTCTGGAATATTTACATTTTCAGGTTTACCTGGATTCTCGAAAACCAATGAAAATCTCGGCGACTGGAAATTCAAATAAACAAAATTTTTTCTGTCTTTCAAAAATTTTTTGGGGTCAACAGAAAAAAATGGACGATTTTTCTGACAAGAAAAAAATTTTTCAAGAAAAGTGTCCATAAAAATAGTTCTTTCACAAAAAATGTGAAAACACTTCTGAAATTTCAAAATTTTTTCAAATTTGAAGAACCCGGGCCCGTCGGGCCGGTTCCTGATTTTGCAAGTATGGCTTCAATATTGTTTTCTCAACTATCAACAGCCTGGAT</canonical>
            <polymorphic>GTTGTTTGAAAGCATCATAACCATCATAGGTTCCCATAGCAATATCGGATCTCAAGTCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTATTATTTGCGTTTTAGTAGACAATGATAAGAAATCCTGCAGAAGAGTAAGCCTCTTGCCTTGTCAGGAGCATTGATTTGGTATAGTTGCTGATAAAAGACTCGAAGTATTTCGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTYCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAAAGAGTTGAAAGTTAATTGAAACAATATCAGTTCGATTTTCATGTAACAAATTTCTTATTATTTATTTTGGACCGTCTGGAATATTTACATTTTCAGGTTTACCTGGATTCTCGAAAACCAATGAAAATCTCGGCGACTGGAAATTCAAATAAACAAAATTTTTTCTGTCTTTCAAAAATTTTTTGGGGTCAACAGAAAAAAATGGACGATTTTTCTGACAAGAAAAAAATTTTTCAAGAAAAGTGTCCATAAAAATAGTTCTTTCACAAAAAATGTGAAAACACTTCTGAAATTTCAAAATTTTTTCAAATTTGAAGAACCCGGGCCCGTCGGGCCGGTTCCTGATTTTGCAAGTATGGCTTCAATATTGTTTTCTCAACTATCAACAGCCTGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACATCACTTCGGTATAGACAA</pcr_primer_p1>
		<pcr_primer_p2>ACATGAAAATCGAACTGATATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAAAGAGTTGAAAGTTAATTGAAACAATATCAGTTCGATTTTCATGT</canonical_amplicon>
		<polymorphic_amplicon>AAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTYCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAAAGAGTTGAAAGTTAATTGAAACAATATCAGTTCGATTTTCATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26650</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>34925</contig_pos>
        <strand></strand>
        <context>ATCTTCATTG[T/C]TCCTGGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTG</left_flank>
        <right_flank>TCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTG</right_flank>
        <qual_score>35</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAGTCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTATTATTTGCGTTTTAGTAGACAATGATAAGAAATCCTGCAGAAGAGTAAGCCTCTTGCCTTGTCAGGAGCATTGATTTGGTATAGTTGCTGATAAAAGACTCGAAGTATTTCGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAAAGAGTTGAAAGTTAATTGAAACAATATCAGTTCGATTTTCATGTAACAAATTTCTTATTATTTATTTTGGACCGTCTGGAATATTTACATTTTCAGGTTTACCTGGATTCTCGAAAACCAATGAAAATCTCGGCGACTGGAAATTCAAATAAACAAAATTTTTTCTGTCTTTCAAAAATTTTTTGGGGTCAACAGAAAAAAATGGACGATTTTTCTGACAAGAAAAAAATTTTTCAAGAAAAGTGTCCATAAAAATAGTTCTTTCACAAAAAATGTGAAAACACTTCTGAAATTTCAAAATTTTTTCAAATTTGAAGAACCCGGGCCCGTCGGGCCGGTTCCTGATTTTGCAAGTATGGCTTCAATATTGTTTTCTCAACTATCAACAGCCTGGATCACTAGATTCGCTGAACTTTTTTTTTAAATTTGAAACTCTTCATTTCTACA</canonical>
            <polymorphic>TCAAGTCATTGTGAGCCCGAAGTATATGTTTTATACCGACGGGACCGAACTGAGCACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTATTATTTGCGTTTTAGTAGACAATGATAAGAAATCCTGCAGAAGAGTAAGCCTCTTGCCTTGTCAGGAGCATTGATTTGGTATAGTTGCTGATAAAAGACTCGAAGTATTTCGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGYTCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAAAGAGTTGAAAGTTAATTGAAACAATATCAGTTCGATTTTCATGTAACAAATTTCTTATTATTTATTTTGGACCGTCTGGAATATTTACATTTTCAGGTTTACCTGGATTCTCGAAAACCAATGAAAATCTCGGCGACTGGAAATTCAAATAAACAAAATTTTTTCTGTCTTTCAAAAATTTTTTGGGGTCAACAGAAAAAAATGGACGATTTTTCTGACAAGAAAAAAATTTTTCAAGAAAAGTGTCCATAAAAATAGTTCTTTCACAAAAAATGTGAAAACACTTCTGAAATTTCAAAATTTTTTCAAATTTGAAGAACCCGGGCCCGTCGGGCCGGTTCCTGATTTTGCAAGTATGGCTTCAATATTGTTTTCTCAACTATCAACAGCCTGGATCACTAGATTCGCTGAACTTTTTTTTTAAATTTGAAACTCTTCATTTCTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACATCACTTCGGTATAGACAA</pcr_primer_p1>
		<pcr_primer_p2>ACATGAAAATCGAACTGATATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAAAGAGTTGAAAGTTAATTGAAACAATATCAGTTCGATTTTCATGT</canonical_amplicon>
		<polymorphic_amplicon>AAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGYTCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAAAGAGTTGAAAGTTAATTGAAACAATATCAGTTCGATTTTCATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26651</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>34979</contig_pos>
        <strand></strand>
        <context>TGGTTTGTAA[A/C]GAGTTGAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAA</left_flank>
        <right_flank>GAGTTGAAAGTTAATTGAAACAATATCAGTTCGATTTTCATGTAACAAAT</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTATTATTTGCGTTTTAGTAGACAATGATAAGAAATCCTGCAGAAGAGTAAGCCTCTTGCCTTGTCAGGAGCATTGATTTGGTATAGTTGCTGATAAAAGACTCGAAGTATTTCGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAAAGAGTTGAAAGTTAATTGAAACAATATCAGTTCGATTTTCATGTAACAAATTTCTTATTATTTATTTTGGACCGTCTGGAATATTTACATTTTCAGGTTTACCTGGATTCTCGAAAACCAATGAAAATCTCGGCGACTGGAAATTCAAATAAACAAAATTTTTTCTGTCTTTCAAAAATTTTTTGGGGTCAACAGAAAAAAATGGACGATTTTTCTGACAAGAAAAAAATTTTTCAAGAAAAGTGTCCATAAAAATAGTTCTTTCACAAAAAATGTGAAAACACTTCTGAAATTTCAAAATTTTTTCAAATTTGAAGAACCCGGGCCCGTCGGGCCGGTTCCTGATTTTGCAAGTATGGCTTCAATATTGTTTTCTCAACTATCAACAGCCTGGATCACTAGATTCGCTGAACTTTTTTTTTAAATTTGAAACTCTTCATTTCTACATTGGATTCAATTTTATGTACATTATAATTTTTCTTCCAATTTGTTCTTGTAATA</canonical>
            <polymorphic>CACTGGCACATCCAAGGATGGCGAGAATACAGAAAGCGAAGAATTTCATAATTTCTAATGAAATGTCGGTTGGATCGAAGTGTGTCCTTTTACATGAAAAAAACACTTCATCTTATCATGTAAAAGGACGTCAACATATTTTTCTAGCCTCTGTTTTTTGTTTTTGGCTTCTAGCCTCTATTATTTGCGTTTTAGTAGACAATGATAAGAAATCCTGCAGAAGAGTAAGCCTCTTGCCTTGTCAGGAGCATTGATTTGGTATAGTTGCTGATAAAAGACTCGAAGTATTTCGAAAACATCACTTCGGTATAGACAAAACGTTTGCTTTTTGTATTCTCAGCTTCTTCAGATGTATGAATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAAMGAGTTGAAAGTTAATTGAAACAATATCAGTTCGATTTTCATGTAACAAATTTCTTATTATTTATTTTGGACCGTCTGGAATATTTACATTTTCAGGTTTACCTGGATTCTCGAAAACCAATGAAAATCTCGGCGACTGGAAATTCAAATAAACAAAATTTTTTCTGTCTTTCAAAAATTTTTTGGGGTCAACAGAAAAAAATGGACGATTTTTCTGACAAGAAAAAAATTTTTCAAGAAAAGTGTCCATAAAAATAGTTCTTTCACAAAAAATGTGAAAACACTTCTGAAATTTCAAAATTTTTTCAAATTTGAAGAACCCGGGCCCGTCGGGCCGGTTCCTGATTTTGCAAGTATGGCTTCAATATTGTTTTCTCAACTATCAACAGCCTGGATCACTAGATTCGCTGAACTTTTTTTTTAAATTTGAAACTCTTCATTTCTACATTGGATTCAATTTTATGTACATTATAATTTTTCTTCCAATTTGTTCTTGTAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGCTCGGATCAGTTCTACT</pcr_primer_p1>
		<pcr_primer_p2>CCAGGTAAACCTGAAAATGTAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAAAGAGTTGAAAGTTAATTGAAACAATATCAGTTCGATTTTCATGTAACAAATTTCTTATTATTTATTTTGGACCGTCTGGAATATTTACATTTTCAGGTTTACCTGG</canonical_amplicon>
		<polymorphic_amplicon>AATGCTCGGATCAGTTCTACTGCTTAAGACACCATCGTTCAAGTTGACAAAGACATCAGAACCGATGTTTGCAAAATGAATCTTCATTGTTCCTGGAAAACTAGGACCACCAGCAGCCAACATACAAACTAAATGGTTTGTAAMGAGTTGAAAGTTAATTGAAACAATATCAGTTCGATTTTCATGTAACAAATTTCTTATTATTTATTTTGGACCGTCTGGAATATTTACATTTTCAGGTTTACCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26652</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>42818</contig_pos>
        <strand></strand>
        <context>ttcttaaatt[T/C]ccgacatctt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGACAAATTATTTATCATAGTGTCGCCTATATTTTATCAGTTCTTAAATT</left_flank>
        <right_flank>CCGACATCTTTCACAGAAATCGAGATAATTAAGATCGAAATTGACGGTTT</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGATATCATAAGTTTGTTAACTGATAAAATACTTTTGATGTTATGACAAATATTATATCAGTTGAAATTTTAATGATGTCTGAAGTAGGAACGGTGAGAATTCCAAATGCAAACGTTAAAAACGGGGCTTTGCAACGGATCTTCAACTGTTAACCATCTATCAAAGCAATCCTCGTACTAAAGCTTTCCAGTGGAAAGGTAATATTCCTTTCCTAATTTACAGGTCCCATCATGCAATGCTTGTAAGATGTTCTTCCGAAGAGTGGTTCTCAACAATGTCACTTATCAGTGCCGTGATTTGAGACGGTGCTATTGGAGAGTTGGTGAGTTATGGTTTACAGTAACTTTCACTTACTGTATTTGTTCTAATATTATAGAAGCCCATCCAAACCGACACTCTGAGCACAATTATCTCGATTCCAGTAAACGATATCAACATTTTCTCAATTGACAAATTATTTATCATAGTGTCGCCTATATTTTATCAGTTCTTAAATTTCCGACATCTTTCACAGAAATCGAGATAATTAAGATCGAAATTGACGGTTTGGTTAAGCTTCTACATCTACGTTTACCATGGTCCAGCAGGTTGGGGGGGGGGGGGGGGGGTTAGCGAGAGAAGGATTTTAATTAAATTGTCTTCAGGTCTGCATAATATGAATTACCGAGCCTTGTGATTCATCAACTCACAGCATGGAGCAAGAGCTTGATAGTTTTTTTTTACTTTGCTTAGCTTCATACTACATACCAAAATTACCATAAATCATGTAATAAAAAGACACGGTAGATTTCATACTTGTCGACAGGCCGATTCCGGACCGGCACGGGCGGGAAAAGCACTCGTTTCACATTTCAAATTGTGAGCATAACAACATACGAGATGATAGAGCTCAATTATAAAACCCGACCAGCATTTAAATCTTATAAAACCCGACCAGAAAACCCGACCAGCATTTAAATCAGTAACCAGGTGCGGTCCGACGTTTAATAGCCGGGCCG</canonical>
            <polymorphic>GAGATATCATAAGTTTGTTAACTGATAAAATACTTTTGATGTTATGACAAATATTATATCAGTTGAAATTTTAATGATGTCTGAAGTAGGAACGGTGAGAATTCCAAATGCAAACGTTAAAAACGGGGCTTTGCAACGGATCTTCAACTGTTAACCATCTATCAAAGCAATCCTCGTACTAAAGCTTTCCAGTGGAAAGGTAATATTCCTTTCCTAATTTACAGGTCCCATCATGCAATGCTTGTAAGATGTTCTTCCGAAGAGTGGTTCTCAACAATGTCACTTATCAGTGCCGTGATTTGAGACGGTGCTATTGGAGAGTTGGTGAGTTATGGTTTACAGTAACTTTCACTTACTGTATTTGTTCTAATATTATAGAAGCCCATCCAAACCGACACTCTGAGCACAATTATCTCGATTCCAGTAAACGATATCAACATTTTCTCAATTGACAAATTATTTATCATAGTGTCGCCTATATTTTATCAGTTCTTAAATTYCCGACATCTTTCACAGAAATCGAGATAATTAAGATCGAAATTGACGGTTTGGTTAAGCTTCTACATCTACGTTTACCATGGTCCAGCAGGTTGGGGGGGGGGGGGGGGGGTTAGCGAGAGAAGGATTTTAATTAAATTGTCTTCAGGTCTGCATAATATGAATTACCGAGCCTTGTGATTCATCAACTCACAGCATGGAGCAAGAGCTTGATAGTTTTTTTTTACTTTGCTTAGCTTCATACTACATACCAAAATTACCATAAATCATGTAATAAAAAGACACGGTAGATTTCATACTTGTCGACAGGCCGATTCCGGACCGGCACGGGCGGGAAAAGCACTCGTTTCACATTTCAAATTGTGAGCATAACAACATACGAGATGATAGAGCTCAATTATAAAACCCGACCAGCATTTAAATCTTATAAAACCCGACCAGAAAACCCGACCAGCATTTAAATCAGTAACCAGGTGCGGTCCGACGTTTAATAGCCGGGCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>505 396 66 33</canonical_bands>
                <polymorphic_bands>901 66 33</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>478 176 143 101 82 20</canonical_bands>
                <polymorphic_bands>579 176 143 82 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTATGGTTTACAGTAACTTTCACTT</pcr_primer_p1>
		<pcr_primer_p2>CTGGACCATGGTAAACGTAG</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>GTTATGGTTTACAGTAACTTTCACTTACTGTATTTGTTCTAATATTATAGAAGCCCATCCAAACCGACACTCTGAGCACAATTATCTCGATTCCAGTAAACGATATCAACATTTTCTCAATTGACAAATTATTTATCATAGTGTCGCCTATATTTTATCAGTTCTTAAATTTCCGACATCTTTCACAGAAATCGAGATAATTAAGATCGAAATTGACGGTTTGGTTAAGCTTCTACATCTACGTTTACCATGGTCCAG</canonical_amplicon>
		<polymorphic_amplicon>GTTATGGTTTACAGTAACTTTCACTTACTGTATTTGTTCTAATATTATAGAAGCCCATCCAAACCGACACTCTGAGCACAATTATCTCGATTCCAGTAAACGATATCAACATTTTCTCAATTGACAAATTATTTATCATAGTGTCGCCTATATTTTATCAGTTCTTAAATTYCCGACATCTTTCACAGAAATCGAGATAATTAAGATCGAAATTGACGGTTTGGTTAAGCTTCTACATCTACGTTTACCATGGTCCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26653</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>43600</contig_pos>
        <strand></strand>
        <context>tatcaaaaac[G/A]atatcttctg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTGTTTATTCGAGCGCAATTATAACATTTCATGAAAAAGGTATCAAAAAC</left_flank>
        <right_flank>ATATCTTCTGATAAATTACTCATCATAATATCTCCAATATTTCATCCGTT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGTAGATTTCATACTTGTCGACAGGCCGATTCCGGACCGGCACGGGCGGGAAAAGCACTCGTTTCACATTTCAAATTGTGAGCATAACAACATACGAGATGATAGAGCTCAATTATAAAACCCGACCAGCATTTAAATCTTATAAAACCCGACCAGAAAACCCGACCAGCATTTAAATCAGTAACCAGGTGCGGTCCGACGTTTAATAGCCGGGCCGGGCAAAAATCGTTGGCCCGGATCAAAGTACAGCTTTCGAAACCGGTGGATTCTTATTAGTGGTTGTAGAGAGCTCCCAGAACTACCATTTAGTATGATGTTTTGTTCACAATTTCCATTTTGAAGCGAGTTATAAGCCGATCCATGCCGACCGTGTTAGGCGCACGAAACCATCGCATATGATTACCGTACTTCCTGTTAAGATACTTCCTCTAATAGAAACTCACACAAACTGTTTATTCGAGCGCAATTATAACATTTCATGAAAAAGGTATCAAAAACGATATCTTCTGATAAATTACTCATCATAATATCTCCAATATTTCATCCGTTGAATCGTTTTTGATAGAGAGTAATTTTCATAAACTTTTGGTATCTTTTACATAAATCGAAATAATTGAGCTCATATTTGACGGATTGGTGCGCTTTTATGTATTAGTGGTAATACGGTACTTGCACACCAACATAAACTCAATTGTGAGACAGTCCTAGTGAGACATCCCAAATTTTGATACTAGTCTGTTCACCCCATACATCTTTGCCGATTAAGCTGTCTGAGCGTTTTCGTATTTTTTTTGTTCCGTAGTACTTTCCTGTGACAATGACAAAGTATTCCAATGTCTGTAGTCTAAAGCATTCTATTATGAGAATTTCATTCTGAGAACTAACGTTTCAGAGAAGTCGATCATTATAACTAACAATACAAGCTGTCTGAAAAAGGAAGTTAGGATATTATGATTGTTACATTTTAATTTATCTGATTGAATGGAACTTGGTTTTAAA</canonical>
            <polymorphic>CGGTAGATTTCATACTTGTCGACAGGCCGATTCCGGACCGGCACGGGCGGGAAAAGCACTCGTTTCACATTTCAAATTGTGAGCATAACAACATACGAGATGATAGAGCTCAATTATAAAACCCGACCAGCATTTAAATCTTATAAAACCCGACCAGAAAACCCGACCAGCATTTAAATCAGTAACCAGGTGCGGTCCGACGTTTAATAGCCGGGCCGGGCAAAAATCGTTGGCCCGGATCAAAGTACAGCTTTCGAAACCGGTGGATTCTTATTAGTGGTTGTAGAGAGCTCCCAGAACTACCATTTAGTATGATGTTTTGTTCACAATTTCCATTTTGAAGCGAGTTATAAGCCGATCCATGCCGACCGTGTTAGGCGCACGAAACCATCGCATATGATTACCGTACTTCCTGTTAAGATACTTCCTCTAATAGAAACTCACACAAACTGTTTATTCGAGCGCAATTATAACATTTCATGAAAAAGGTATCAAAAACRATATCTTCTGATAAATTACTCATCATAATATCTCCAATATTTCATCCGTTGAATCGTTTTTGATAGAGAGTAATTTTCATAAACTTTTGGTATCTTTTACATAAATCGAAATAATTGAGCTCATATTTGACGGATTGGTGCGCTTTTATGTATTAGTGGTAATACGGTACTTGCACACCAACATAAACTCAATTGTGAGACAGTCCTAGTGAGACATCCCAAATTTTGATACTAGTCTGTTCACCCCATACATCTTTGCCGATTAAGCTGTCTGAGCGTTTTCGTATTTTTTTTGTTCCGTAGTACTTTCCTGTGACAATGACAAAGTATTCCAATGTCTGTAGTCTAAAGCATTCTATTATGAGAATTTCATTCTGAGAACTAACGTTTCAGAGAAGTCGATCATTATAACTAACAATACAAGCTGTCTGAAAAAGGAAGTTAGGATATTATGATTGTTACATTTTAATTTATCTGATTGAATGGAACTTGGTTTTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTACCGTACTTCCTGTTAAGATAC</pcr_primer_p1>
		<pcr_primer_p2>ACCGTATTACCACTAATACATAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>ATTACCGTACTTCCTGTTAAGATACTTCCTCTAATAGAAACTCACACAAACTGTTTATTCGAGCGCAATTATAACATTTCATGAAAAAGGTATCAAAAACGATATCTTCTGATAAATTACTCATCATAATATCTCCAATATTTCATCCGTTGAATCGTTTTTGATAGAGAGTAATTTTCATAAACTTTTGGTATCTTTTACATAAATCGAAATAATTGAGCTCATATTTGACGGATTGGTGCGCTTTTATGTATTAGTGGTAATACGGT</canonical_amplicon>
		<polymorphic_amplicon>ATTACCGTACTTCCTGTTAAGATACTTCCTCTAATAGAAACTCACACAAACTGTTTATTCGAGCGCAATTATAACATTTCATGAAAAAGGTATCAAAAACRATATCTTCTGATAAATTACTCATCATAATATCTCCAATATTTCATCCGTTGAATCGTTTTTGATAGAGAGTAATTTTCATAAACTTTTGGTATCTTTTACATAAATCGAAATAATTGAGCTCATATTTGACGGATTGGTGCGCTTTTATGTATTAGTGGTAATACGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26654</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>43773</contig_pos>
        <strand>+</strand>
        <context>TACGGTACTT[G/T]CACACCAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATATTTGACGGATTGGTGCGCTTTTATGTATTAGTGGTAATACGGTACTT</left_flank>
        <right_flank>CACACCAACATAAACTCAATTGTGAGACAGTCCTAGTGAGACATCCCAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAAATCAGTAACCAGGTGCGGTCCGACGTTTAATAGCCGGGCCGGGCAAAAATCGTTGGCCCGGATCAAAGTACAGCTTTCGAAACCGGTGGATTCTTATTAGTGGTTGTAGAGAGCTCCCAGAACTACCATTTAGTATGATGTTTTGTTCACAATTTCCATTTTGAAGCGAGTTATAAGCCGATCCATGCCGACCGTGTTAGGCGCACGAAACCATCGCATATGATTACCGTACTTCCTGTTAAGATACTTCCTCTAATAGAAACTCACACAAACTGTTTATTCGAGCGCAATTATAACATTTCATGAAAAAGGTATCAAAAACGATATCTTCTGATAAATTACTCATCATAATATCTCCAATATTTCATCCGTTGAATCGTTTTTGATAGAGAGTAATTTTCATAAACTTTTGGTATCTTTTACATAAATCGAAATAATTGAGCTCATATTTGACGGATTGGTGCGCTTTTATGTATTAGTGGTAATACGGTACTTGCACACCAACATAAACTCAATTGTGAGACAGTCCTAGTGAGACATCCCAAATTTTGATACTAGTCTGTTCACCCCATACATCTTTGCCGATTAAGCTGTCTGAGCGTTTTCGTATTTTTTTTGTTCCGTAGTACTTTCCTGTGACAATGACAAAGTATTCCAATGTCTGTAGTCTAAAGCATTCTATTATGAGAATTTCATTCTGAGAACTAACGTTTCAGAGAAGTCGATCATTATAACTAACAATACAAGCTGTCTGAAAAAGGAAGTTAGGATATTATGATTGTTACATTTTAATTTATCTGATTGAATGGAACTTGGTTTTAAACCGGTATGATTTAGGAAATTCAGAGGCTTACACTTATATGATTACCGTGTCAAAATAGTACGGCCCAATACACTATTTTTTAAATGAAATCTATCGACGAGTCTCAACTTATTTGACCTACACAAATCCCCGCTACCGTATACCATGTGATCCGGACAACATGTGCCGGTCCA</canonical>
            <polymorphic>TTAAATCAGTAACCAGGTGCGGTCCGACGTTTAATAGCCGGGCCGGGCAAAAATCGTTGGCCCGGATCAAAGTACAGCTTTCGAAACCGGTGGATTCTTATTAGTGGTTGTAGAGAGCTCCCAGAACTACCATTTAGTATGATGTTTTGTTCACAATTTCCATTTTGAAGCGAGTTATAAGCCGATCCATGCCGACCGTGTTAGGCGCACGAAACCATCGCATATGATTACCGTACTTCCTGTTAAGATACTTCCTCTAATAGAAACTCACACAAACTGTTTATTCGAGCGCAATTATAACATTTCATGAAAAAGGTATCAAAAACGATATCTTCTGATAAATTACTCATCATAATATCTCCAATATTTCATCCGTTGAATCGTTTTTGATAGAGAGTAATTTTCATAAACTTTTGGTATCTTTTACATAAATCGAAATAATTGAGCTCATATTTGACGGATTGGTGCGCTTTTATGTATTAGTGGTAATACGGTACTTKCACACCAACATAAACTCAATTGTGAGACAGTCCTAGTGAGACATCCCAAATTTTGATACTAGTCTGTTCACCCCATACATCTTTGCCGATTAAGCTGTCTGAGCGTTTTCGTATTTTTTTTGTTCCGTAGTACTTTCCTGTGACAATGACAAAGTATTCCAATGTCTGTAGTCTAAAGCATTCTATTATGAGAATTTCATTCTGAGAACTAACGTTTCAGAGAAGTCGATCATTATAACTAACAATACAAGCTGTCTGAAAAAGGAAGTTAGGATATTATGATTGTTACATTTTAATTTATCTGATTGAATGGAACTTGGTTTTAAACCGGTATGATTTAGGAAATTCAGAGGCTTACACTTATATGATTACCGTGTCAAAATAGTACGGCCCAATACACTATTTTTTAAATGAAATCTATCGACGAGTCTCAACTTATTTGACCTACACAAATCCCCGCTACCGTATACCATGTGATCCGGACAACATGTGCCGGTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATTACCGTACTTCCTGTTAAG</pcr_primer_p1>
		<pcr_primer_p2>AATTTGGGATGTCTCACTAGG</pcr_primer_p2>
		<pcr_amplicon_size>328</pcr_amplicon_size>
		<canonical_amplicon>TGATTACCGTACTTCCTGTTAAGATACTTCCTCTAATAGAAACTCACACAAACTGTTTATTCGAGCGCAATTATAACATTTCATGAAAAAGGTATCAAAAACGATATCTTCTGATAAATTACTCATCATAATATCTCCAATATTTCATCCGTTGAATCGTTTTTGATAGAGAGTAATTTTCATAAACTTTTGGTATCTTTTACATAAATCGAAATAATTGAGCTCATATTTGACGGATTGGTGCGCTTTTATGTATTAGTGGTAATACGGTACTTGCACACCAACATAAACTCAATTGTGAGACAGTCCTAGTGAGACATCCCAAATT</canonical_amplicon>
		<polymorphic_amplicon>TGATTACCGTACTTCCTGTTAAGATACTTCCTCTAATAGAAACTCACACAAACTGTTTATTCGAGCGCAATTATAACATTTCATGAAAAAGGTATCAAAAACGATATCTTCTGATAAATTACTCATCATAATATCTCCAATATTTCATCCGTTGAATCGTTTTTGATAGAGAGTAATTTTCATAAACTTTTGGTATCTTTTACATAAATCGAAATAATTGAGCTCATATTTGACGGATTGGTGCGCTTTTATGTATTAGTGGTAATACGGTACTTKCACACCAACATAAACTCAATTGTGAGACAGTCCTAGTGAGACATCCCAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26655</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>43887</contig_pos>
        <strand>+</strand>
        <context>CGTTTTCGTA[C/T]TTTTTTTGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGTTCACCCCATACATCTTTGCCGATTAAGCTGTCTGAGCGTTTTCGTA</left_flank>
        <right_flank>TTTTTTTGTTCCGTAGTACTTTCCTGTGACAATGACAAAGTATTCCAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCTCCCAGAACTACCATTTAGTATGATGTTTTGTTCACAATTTCCATTTTGAAGCGAGTTATAAGCCGATCCATGCCGACCGTGTTAGGCGCACGAAACCATCGCATATGATTACCGTACTTCCTGTTAAGATACTTCCTCTAATAGAAACTCACACAAACTGTTTATTCGAGCGCAATTATAACATTTCATGAAAAAGGTATCAAAAACGATATCTTCTGATAAATTACTCATCATAATATCTCCAATATTTCATCCGTTGAATCGTTTTTGATAGAGAGTAATTTTCATAAACTTTTGGTATCTTTTACATAAATCGAAATAATTGAGCTCATATTTGACGGATTGGTGCGCTTTTATGTATTAGTGGTAATACGGTACTTGCACACCAACATAAACTCAATTGTGAGACAGTCCTAGTGAGACATCCCAAATTTTGATACTAGTCTGTTCACCCCATACATCTTTGCCGATTAAGCTGTCTGAGCGTTTTCGTATTTTTTTTGTTCCGTAGTACTTTCCTGTGACAATGACAAAGTATTCCAATGTCTGTAGTCTAAAGCATTCTATTATGAGAATTTCATTCTGAGAACTAACGTTTCAGAGAAGTCGATCATTATAACTAACAATACAAGCTGTCTGAAAAAGGAAGTTAGGATATTATGATTGTTACATTTTAATTTATCTGATTGAATGGAACTTGGTTTTAAACCGGTATGATTTAGGAAATTCAGAGGCTTACACTTATATGATTACCGTGTCAAAATAGTACGGCCCAATACACTATTTTTTAAATGAAATCTATCGACGAGTCTCAACTTATTTGACCTACACAAATCCCCGCTACCGTATACCATGTGATCCGGACAACATGTGCCGGTCCAATAAACGTTCTCCAACTTTGGATCAGCTATTCTATCTGTTTTTTCTCATTGAGCGTCACAAAAAAAAATCGGAGATTTCAAGCTTTTATGTAATATTAAATGCCGATTATCTGT</canonical>
            <polymorphic>GAGCTCCCAGAACTACCATTTAGTATGATGTTTTGTTCACAATTTCCATTTTGAAGCGAGTTATAAGCCGATCCATGCCGACCGTGTTAGGCGCACGAAACCATCGCATATGATTACCGTACTTCCTGTTAAGATACTTCCTCTAATAGAAACTCACACAAACTGTTTATTCGAGCGCAATTATAACATTTCATGAAAAAGGTATCAAAAACGATATCTTCTGATAAATTACTCATCATAATATCTCCAATATTTCATCCGTTGAATCGTTTTTGATAGAGAGTAATTTTCATAAACTTTTGGTATCTTTTACATAAATCGAAATAATTGAGCTCATATTTGACGGATTGGTGCGCTTTTATGTATTAGTGGTAATACGGTACTTGCACACCAACATAAACTCAATTGTGAGACAGTCCTAGTGAGACATCCCAAATTTTGATACTAGTCTGTTCACCCCATACATCTTTGCCGATTAAGCTGTCTGAGCGTTTTCGTAYTTTTTTTGTTCCGTAGTACTTTCCTGTGACAATGACAAAGTATTCCAATGTCTGTAGTCTAAAGCATTCTATTATGAGAATTTCATTCTGAGAACTAACGTTTCAGAGAAGTCGATCATTATAACTAACAATACAAGCTGTCTGAAAAAGGAAGTTAGGATATTATGATTGTTACATTTTAATTTATCTGATTGAATGGAACTTGGTTTTAAACCGGTATGATTTAGGAAATTCAGAGGCTTACACTTATATGATTACCGTGTCAAAATAGTACGGCCCAATACACTATTTTTTAAATGAAATCTATCGACGAGTCTCAACTTATTTGACCTACACAAATCCCCGCTACCGTATACCATGTGATCCGGACAACATGTGCCGGTCCAATAAACGTTCTCCAACTTTGGATCAGCTATTCTATCTGTTTTTTCTCATTGAGCGTCACAAAAAAAAATCGGAGATTTCAAGCTTTTATGTAATATTAAATGCCGATTATCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAATTGTGAGACAGTCCTAGT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTTCAGACAGCTTGTATTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCAATTGTGAGACAGTCCTAGTGAGACATCCCAAATTTTGATACTAGTCTGTTCACCCCATACATCTTTGCCGATTAAGCTGTCTGAGCGTTTTCGTATTTTTTTTGTTCCGTAGTACTTTCCTGTGACAATGACAAAGTATTCCAATGTCTGTAGTCTAAAGCATTCTATTATGAGAATTTCATTCTGAGAACTAACGTTTCAGAGAAGTCGATCATTATAACTAACAATACAAGCTGTCTGAAAAAG</canonical_amplicon>
		<polymorphic_amplicon>CTCAATTGTGAGACAGTCCTAGTGAGACATCCCAAATTTTGATACTAGTCTGTTCACCCCATACATCTTTGCCGATTAAGCTGTCTGAGCGTTTTCGTAYTTTTTTTGTTCCGTAGTACTTTCCTGTGACAATGACAAAGTATTCCAATGTCTGTAGTCTAAAGCATTCTATTATGAGAATTTCATTCTGAGAACTAACGTTTCAGAGAAGTCGATCATTATAACTAACAATACAAGCTGTCTGAAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26656</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>43901</contig_pos>
        <strand></strand>
        <context>TTTTGTTCCG[T/C]AGTACTTTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CATCTTTGCCGATTAAGCTGTCTGAGCGTTTTCGTATTTTTTTTGTTCCG</left_flank>
        <right_flank>AGTACTTTCCTGTGACAATGACAAAGTATTCCAATGTCTGTAGTCTAAAG</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCATTTAGTATGATGTTTTGTTCACAATTTCCATTTTGAAGCGAGTTATAAGCCGATCCATGCCGACCGTGTTAGGCGCACGAAACCATCGCATATGATTACCGTACTTCCTGTTAAGATACTTCCTCTAATAGAAACTCACACAAACTGTTTATTCGAGCGCAATTATAACATTTCATGAAAAAGGTATCAAAAACGATATCTTCTGATAAATTACTCATCATAATATCTCCAATATTTCATCCGTTGAATCGTTTTTGATAGAGAGTAATTTTCATAAACTTTTGGTATCTTTTACATAAATCGAAATAATTGAGCTCATATTTGACGGATTGGTGCGCTTTTATGTATTAGTGGTAATACGGTACTTGCACACCAACATAAACTCAATTGTGAGACAGTCCTAGTGAGACATCCCAAATTTTGATACTAGTCTGTTCACCCCATACATCTTTGCCGATTAAGCTGTCTGAGCGTTTTCGTATTTTTTTTGTTCCGTAGTACTTTCCTGTGACAATGACAAAGTATTCCAATGTCTGTAGTCTAAAGCATTCTATTATGAGAATTTCATTCTGAGAACTAACGTTTCAGAGAAGTCGATCATTATAACTAACAATACAAGCTGTCTGAAAAAGGAAGTTAGGATATTATGATTGTTACATTTTAATTTATCTGATTGAATGGAACTTGGTTTTAAACCGGTATGATTTAGGAAATTCAGAGGCTTACACTTATATGATTACCGTGTCAAAATAGTACGGCCCAATACACTATTTTTTAAATGAAATCTATCGACGAGTCTCAACTTATTTGACCTACACAAATCCCCGCTACCGTATACCATGTGATCCGGACAACATGTGCCGGTCCAATAAACGTTCTCCAACTTTGGATCAGCTATTCTATCTGTTTTTTCTCATTGAGCGTCACAAAAAAAAATCGGAGATTTCAAGCTTTTATGTAATATTAAATGCCGATTATCTGTTAAAATGAGACTCA</canonical>
            <polymorphic>ACCATTTAGTATGATGTTTTGTTCACAATTTCCATTTTGAAGCGAGTTATAAGCCGATCCATGCCGACCGTGTTAGGCGCACGAAACCATCGCATATGATTACCGTACTTCCTGTTAAGATACTTCCTCTAATAGAAACTCACACAAACTGTTTATTCGAGCGCAATTATAACATTTCATGAAAAAGGTATCAAAAACGATATCTTCTGATAAATTACTCATCATAATATCTCCAATATTTCATCCGTTGAATCGTTTTTGATAGAGAGTAATTTTCATAAACTTTTGGTATCTTTTACATAAATCGAAATAATTGAGCTCATATTTGACGGATTGGTGCGCTTTTATGTATTAGTGGTAATACGGTACTTGCACACCAACATAAACTCAATTGTGAGACAGTCCTAGTGAGACATCCCAAATTTTGATACTAGTCTGTTCACCCCATACATCTTTGCCGATTAAGCTGTCTGAGCGTTTTCGTATTTTTTTTGTTCCGYAGTACTTTCCTGTGACAATGACAAAGTATTCCAATGTCTGTAGTCTAAAGCATTCTATTATGAGAATTTCATTCTGAGAACTAACGTTTCAGAGAAGTCGATCATTATAACTAACAATACAAGCTGTCTGAAAAAGGAAGTTAGGATATTATGATTGTTACATTTTAATTTATCTGATTGAATGGAACTTGGTTTTAAACCGGTATGATTTAGGAAATTCAGAGGCTTACACTTATATGATTACCGTGTCAAAATAGTACGGCCCAATACACTATTTTTTAAATGAAATCTATCGACGAGTCTCAACTTATTTGACCTACACAAATCCCCGCTACCGTATACCATGTGATCCGGACAACATGTGCCGGTCCAATAAACGTTCTCCAACTTTGGATCAGCTATTCTATCTGTTTTTTCTCATTGAGCGTCACAAAAAAAAATCGGAGATTTCAAGCTTTTATGTAATATTAAATGCCGATTATCTGTTAAAATGAGACTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAATTGTGAGACAGTCCTAGT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTTCAGACAGCTTGTATTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCAATTGTGAGACAGTCCTAGTGAGACATCCCAAATTTTGATACTAGTCTGTTCACCCCATACATCTTTGCCGATTAAGCTGTCTGAGCGTTTTCGTATTTTTTTTGTTCCGTAGTACTTTCCTGTGACAATGACAAAGTATTCCAATGTCTGTAGTCTAAAGCATTCTATTATGAGAATTTCATTCTGAGAACTAACGTTTCAGAGAAGTCGATCATTATAACTAACAATACAAGCTGTCTGAAAAAG</canonical_amplicon>
		<polymorphic_amplicon>CTCAATTGTGAGACAGTCCTAGTGAGACATCCCAAATTTTGATACTAGTCTGTTCACCCCATACATCTTTGCCGATTAAGCTGTCTGAGCGTTTTCGTATTTTTTTTGTTCCGYAGTACTTTCCTGTGACAATGACAAAGTATTCCAATGTCTGTAGTCTAAAGCATTCTATTATGAGAATTTCATTCTGAGAACTAACGTTTCAGAGAAGTCGATCATTATAACTAACAATACAAGCTGTCTGAAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26657</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>44004</contig_pos>
        <strand>+</strand>
        <context>AGAAGTCGAT[C/T]ATTATAACTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTATTATGAGAATTTCATTCTGAGAACTAACGTTTCAGAGAAGTCGAT</left_flank>
        <right_flank>ATTATAACTAACAATACAAGCTGTCTGAAAAAGGAAGTTAGGATATTATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTACTTCCTGTTAAGATACTTCCTCTAATAGAAACTCACACAAACTGTTTATTCGAGCGCAATTATAACATTTCATGAAAAAGGTATCAAAAACGATATCTTCTGATAAATTACTCATCATAATATCTCCAATATTTCATCCGTTGAATCGTTTTTGATAGAGAGTAATTTTCATAAACTTTTGGTATCTTTTACATAAATCGAAATAATTGAGCTCATATTTGACGGATTGGTGCGCTTTTATGTATTAGTGGTAATACGGTACTTGCACACCAACATAAACTCAATTGTGAGACAGTCCTAGTGAGACATCCCAAATTTTGATACTAGTCTGTTCACCCCATACATCTTTGCCGATTAAGCTGTCTGAGCGTTTTCGTATTTTTTTTGTTCCGTAGTACTTTCCTGTGACAATGACAAAGTATTCCAATGTCTGTAGTCTAAAGCATTCTATTATGAGAATTTCATTCTGAGAACTAACGTTTCAGAGAAGTCGATCATTATAACTAACAATACAAGCTGTCTGAAAAAGGAAGTTAGGATATTATGATTGTTACATTTTAATTTATCTGATTGAATGGAACTTGGTTTTAAACCGGTATGATTTAGGAAATTCAGAGGCTTACACTTATATGATTACCGTGTCAAAATAGTACGGCCCAATACACTATTTTTTAAATGAAATCTATCGACGAGTCTCAACTTATTTGACCTACACAAATCCCCGCTACCGTATACCATGTGATCCGGACAACATGTGCCGGTCCAATAAACGTTCTCCAACTTTGGATCAGCTATTCTATCTGTTTTTTCTCATTGAGCGTCACAAAAAAAAATCGGAGATTTCAAGCTTTTATGTAATATTAAATGCCGATTATCTGTTAAAATGAGACTCAGTCTGCAGGGAAATTACAGGAGGGTGGAGATTGAGAGAGCTTAATCATGGATATTAACTAGAGTGCTTTATAATGTGCGTCAGCTGAGAATTTGAATGGAAGC</canonical>
            <polymorphic>CGTACTTCCTGTTAAGATACTTCCTCTAATAGAAACTCACACAAACTGTTTATTCGAGCGCAATTATAACATTTCATGAAAAAGGTATCAAAAACGATATCTTCTGATAAATTACTCATCATAATATCTCCAATATTTCATCCGTTGAATCGTTTTTGATAGAGAGTAATTTTCATAAACTTTTGGTATCTTTTACATAAATCGAAATAATTGAGCTCATATTTGACGGATTGGTGCGCTTTTATGTATTAGTGGTAATACGGTACTTGCACACCAACATAAACTCAATTGTGAGACAGTCCTAGTGAGACATCCCAAATTTTGATACTAGTCTGTTCACCCCATACATCTTTGCCGATTAAGCTGTCTGAGCGTTTTCGTATTTTTTTTGTTCCGTAGTACTTTCCTGTGACAATGACAAAGTATTCCAATGTCTGTAGTCTAAAGCATTCTATTATGAGAATTTCATTCTGAGAACTAACGTTTCAGAGAAGTCGATYATTATAACTAACAATACAAGCTGTCTGAAAAAGGAAGTTAGGATATTATGATTGTTACATTTTAATTTATCTGATTGAATGGAACTTGGTTTTAAACCGGTATGATTTAGGAAATTCAGAGGCTTACACTTATATGATTACCGTGTCAAAATAGTACGGCCCAATACACTATTTTTTAAATGAAATCTATCGACGAGTCTCAACTTATTTGACCTACACAAATCCCCGCTACCGTATACCATGTGATCCGGACAACATGTGCCGGTCCAATAAACGTTCTCCAACTTTGGATCAGCTATTCTATCTGTTTTTTCTCATTGAGCGTCACAAAAAAAAATCGGAGATTTCAAGCTTTTATGTAATATTAAATGCCGATTATCTGTTAAAATGAGACTCAGTCTGCAGGGAAATTACAGGAGGGTGGAGATTGAGAGAGCTTAATCATGGATATTAACTAGAGTGCTTTATAATGTGCGTCAGCTGAGAATTTGAATGGAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>496 248 211 45</canonical_bands>
                <polymorphic_bands>744 211 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACAATGACAAAGTATTCCAATG</pcr_primer_p1>
		<pcr_primer_p2>CGTACTATTTTGACACGGTAATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GACAATGACAAAGTATTCCAATGTCTGTAGTCTAAAGCATTCTATTATGAGAATTTCATTCTGAGAACTAACGTTTCAGAGAAGTCGATCATTATAACTAACAATACAAGCTGTCTGAAAAAGGAAGTTAGGATATTATGATTGTTACATTTTAATTTATCTGATTGAATGGAACTTGGTTTTAAACCGGTATGATTTAGGAAATTCAGAGGCTTACACTTATATGATTACCGTGTCAAAATAGTACG</canonical_amplicon>
		<polymorphic_amplicon>GACAATGACAAAGTATTCCAATGTCTGTAGTCTAAAGCATTCTATTATGAGAATTTCATTCTGAGAACTAACGTTTCAGAGAAGTCGATYATTATAACTAACAATACAAGCTGTCTGAAAAAGGAAGTTAGGATATTATGATTGTTACATTTTAATTTATCTGATTGAATGGAACTTGGTTTTAAACCGGTATGATTTAGGAAATTCAGAGGCTTACACTTATATGATTACCGTGTCAAAATAGTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26658</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>44090</contig_pos>
        <strand>+</strand>
        <context>TGAATGGAAC[A/T]TGGTTTTAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTTAGGATATTATGATTGTTACATTTTAATTTATCTGATTGAATGGAAC</left_flank>
        <right_flank>TGGTTTTAAACCGGTATGATTTAGGAAATTCAGAGGCTTACACTTATATG</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAAAAACGATATCTTCTGATAAATTACTCATCATAATATCTCCAATATTTCATCCGTTGAATCGTTTTTGATAGAGAGTAATTTTCATAAACTTTTGGTATCTTTTACATAAATCGAAATAATTGAGCTCATATTTGACGGATTGGTGCGCTTTTATGTATTAGTGGTAATACGGTACTTGCACACCAACATAAACTCAATTGTGAGACAGTCCTAGTGAGACATCCCAAATTTTGATACTAGTCTGTTCACCCCATACATCTTTGCCGATTAAGCTGTCTGAGCGTTTTCGTATTTTTTTTGTTCCGTAGTACTTTCCTGTGACAATGACAAAGTATTCCAATGTCTGTAGTCTAAAGCATTCTATTATGAGAATTTCATTCTGAGAACTAACGTTTCAGAGAAGTCGATCATTATAACTAACAATACAAGCTGTCTGAAAAAGGAAGTTAGGATATTATGATTGTTACATTTTAATTTATCTGATTGAATGGAACTTGGTTTTAAACCGGTATGATTTAGGAAATTCAGAGGCTTACACTTATATGATTACCGTGTCAAAATAGTACGGCCCAATACACTATTTTTTAAATGAAATCTATCGACGAGTCTCAACTTATTTGACCTACACAAATCCCCGCTACCGTATACCATGTGATCCGGACAACATGTGCCGGTCCAATAAACGTTCTCCAACTTTGGATCAGCTATTCTATCTGTTTTTTCTCATTGAGCGTCACAAAAAAAAATCGGAGATTTCAAGCTTTTATGTAATATTAAATGCCGATTATCTGTTAAAATGAGACTCAGTCTGCAGGGAAATTACAGGAGGGTGGAGATTGAGAGAGCTTAATCATGGATATTAACTAGAGTGCTTTATAATGTGCGTCAGCTGAGAATTTGAATGGAAGCGTGGAACGAGAAGGGAAGAGCAATGAAAATAGGTGGAAACTGGATTAGGAAATTCAAAAATGAATTGAATTCTACTTTTCAAAAAG</canonical>
            <polymorphic>ATCAAAAACGATATCTTCTGATAAATTACTCATCATAATATCTCCAATATTTCATCCGTTGAATCGTTTTTGATAGAGAGTAATTTTCATAAACTTTTGGTATCTTTTACATAAATCGAAATAATTGAGCTCATATTTGACGGATTGGTGCGCTTTTATGTATTAGTGGTAATACGGTACTTGCACACCAACATAAACTCAATTGTGAGACAGTCCTAGTGAGACATCCCAAATTTTGATACTAGTCTGTTCACCCCATACATCTTTGCCGATTAAGCTGTCTGAGCGTTTTCGTATTTTTTTTGTTCCGTAGTACTTTCCTGTGACAATGACAAAGTATTCCAATGTCTGTAGTCTAAAGCATTCTATTATGAGAATTTCATTCTGAGAACTAACGTTTCAGAGAAGTCGATCATTATAACTAACAATACAAGCTGTCTGAAAAAGGAAGTTAGGATATTATGATTGTTACATTTTAATTTATCTGATTGAATGGAACWTGGTTTTAAACCGGTATGATTTAGGAAATTCAGAGGCTTACACTTATATGATTACCGTGTCAAAATAGTACGGCCCAATACACTATTTTTTAAATGAAATCTATCGACGAGTCTCAACTTATTTGACCTACACAAATCCCCGCTACCGTATACCATGTGATCCGGACAACATGTGCCGGTCCAATAAACGTTCTCCAACTTTGGATCAGCTATTCTATCTGTTTTTTCTCATTGAGCGTCACAAAAAAAAATCGGAGATTTCAAGCTTTTATGTAATATTAAATGCCGATTATCTGTTAAAATGAGACTCAGTCTGCAGGGAAATTACAGGAGGGTGGAGATTGAGAGAGCTTAATCATGGATATTAACTAGAGTGCTTTATAATGTGCGTCAGCTGAGAATTTGAATGGAAGCGTGGAACGAGAAGGGAAGAGCAATGAAAATAGGTGGAAACTGGATTAGGAAATTCAAAAATGAATTGAATTCTACTTTTCAAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTTCATTCTGAGAACTAACG</pcr_primer_p1>
		<pcr_primer_p2>AAATAAGTTGAGACTCGTCGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATTTCATTCTGAGAACTAACGTTTCAGAGAAGTCGATCATTATAACTAACAATACAAGCTGTCTGAAAAAGGAAGTTAGGATATTATGATTGTTACATTTTAATTTATCTGATTGAATGGAACTTGGTTTTAAACCGGTATGATTTAGGAAATTCAGAGGCTTACACTTATATGATTACCGTGTCAAAATAGTACGGCCCAATACACTATTTTTTAAATGAAATCTATCGACGAGTCTCAACTTATTT</canonical_amplicon>
		<polymorphic_amplicon>GAATTTCATTCTGAGAACTAACGTTTCAGAGAAGTCGATCATTATAACTAACAATACAAGCTGTCTGAAAAAGGAAGTTAGGATATTATGATTGTTACATTTTAATTTATCTGATTGAATGGAACWTGGTTTTAAACCGGTATGATTTAGGAAATTCAGAGGCTTACACTTATATGATTACCGTGTCAAAATAGTACGGCCCAATACACTATTTTTTAAATGAAATCTATCGACGAGTCTCAACTTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26659</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>55882</contig_pos>
        <strand>+</strand>
        <context>GAAAAAACAG[C/T]CAGTTGTGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAGTATACGTATCGCGCCATCTTCACAGTCAACGGTGGTGAAAAAACAG</left_flank>
        <right_flank>CAGTTGTGCAGGTAAGAAACTTGAAATTTTGGAGTGTTAGTCATTATTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATCCTGATTTTTGGCCCTGTAGTACGTCTTCTAAAGAACTTCCACCTGCTACCTGGAGCTTCTTAAAATCCCCAATTTCTGGACCCCTAACGATATTTTCTTTCACACTTTAATGCATTTCCCCTTTTCCTAAATAACTCATTTCCTGCCATTGAGAAAACCACAATTTCAATCTTCGGCCCTCTTCAAATGCTGAATTGAAATTCATTGTCTTCCTCTTATTTTTTTTCCTCCTTTTCTCATTTTTGCTCTTTCCATTACAAATCTCTGATCTCTCATCTTATCAGATACCAAACCCAAAAAAAATGGACGTTCTTCGTCGAATTATGCCCCGAAAAATGAAACGTGATCAGTATTCATTTGAGCTGCTGAAAAGCAGTTCGAATATAGAATTATCTACTGGAGTGGGTCCGGGCACTCCGTTACCCAGAAATTTTTCCCATTATGACAGTATACGTATCGCGCCATCTTCACAGTCAACGGTGGTGAAAAAACAGCCAGTTGTGCAGGTAAGAAACTTGAAATTTTGGAGTGTTAGTCATTATTGAACGTCTATACACACTCCTTGCACTTCGAGCTCAATTATCTCGGTTCCTATGAAAGACATCGAAAAACTGATAAAATATTGGCGAGATTATGGTAAACACATTTTCAGTCGACAGATTTTCGATATCTTCTGTAGAAACCGAGATAAATTGAGTTCAAACTGTAAGCATTCATGGTAAGCTAGAGTCCATATTGAGCCTTAAACTTTATAAATGAATATTTTGCATTAAAATGTAAAATGAATTGTAAAACTTATGTATCAGGCAACTATTACTCAGAATTTGTATTATAAAAACTACAAAACATTGATAATGATTCATTTCCGAAGTTTTAAGCCCAATTTTAAGACACTGACCATTTTTTAAATAAAAATGTTTAACACTCATATTTTCATCCAATTTTATTTGTTCATTCTTTGAATTCCTAGATTTTAAGGTTCTATTATTCATTTA</canonical>
            <polymorphic>CAATCCTGATTTTTGGCCCTGTAGTACGTCTTCTAAAGAACTTCCACCTGCTACCTGGAGCTTCTTAAAATCCCCAATTTCTGGACCCCTAACGATATTTTCTTTCACACTTTAATGCATTTCCCCTTTTCCTAAATAACTCATTTCCTGCCATTGAGAAAACCACAATTTCAATCTTCGGCCCTCTTCAAATGCTGAATTGAAATTCATTGTCTTCCTCTTATTTTTTTTCCTCCTTTTCTCATTTTTGCTCTTTCCATTACAAATCTCTGATCTCTCATCTTATCAGATACCAAACCCAAAAAAAATGGACGTTCTTCGTCGAATTATGCCCCGAAAAATGAAACGTGATCAGTATTCATTTGAGCTGCTGAAAAGCAGTTCGAATATAGAATTATCTACTGGAGTGGGTCCGGGCACTCCGTTACCCAGAAATTTTTCCCATTATGACAGTATACGTATCGCGCCATCTTCACAGTCAACGGTGGTGAAAAAACAGYCAGTTGTGCAGGTAAGAAACTTGAAATTTTGGAGTGTTAGTCATTATTGAACGTCTATACACACTCCTTGCACTTCGAGCTCAATTATCTCGGTTCCTATGAAAGACATCGAAAAACTGATAAAATATTGGCGAGATTATGGTAAACACATTTTCAGTCGACAGATTTTCGATATCTTCTGTAGAAACCGAGATAAATTGAGTTCAAACTGTAAGCATTCATGGTAAGCTAGAGTCCATATTGAGCCTTAAACTTTATAAATGAATATTTTGCATTAAAATGTAAAATGAATTGTAAAACTTATGTATCAGGCAACTATTACTCAGAATTTGTATTATAAAAACTACAAAACATTGATAATGATTCATTTCCGAAGTTTTAAGCCCAATTTTAAGACACTGACCATTTTTTAAATAAAAATGTTTAACACTCATATTTTCATCCAATTTTATTTGTTCATTCTTTGAATTCCTAGATTTTAAGGTTCTATTATTCATTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>505 424 71</canonical_bands>
                <polymorphic_bands>576 424</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>186 149 138 132 121 117 80 44 17 16</canonical_bands>
                <polymorphic_bands>212 186 149 138 121 117 44 17 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACGTGATCAGTATTCATTTGAG</pcr_primer_p1>
		<pcr_primer_p2>GACGTTCAATAATGACTAACACTC</pcr_primer_p2>
		<pcr_amplicon_size>211</pcr_amplicon_size>
		<canonical_amplicon>AACGTGATCAGTATTCATTTGAGCTGCTGAAAAGCAGTTCGAATATAGAATTATCTACTGGAGTGGGTCCGGGCACTCCGTTACCCAGAAATTTTTCCCATTATGACAGTATACGTATCGCGCCATCTTCACAGTCAACGGTGGTGAAAAAACAGCCAGTTGTGCAGGTAAGAAACTTGAAATTTTGGAGTGTTAGTCATTATTGAACGTC</canonical_amplicon>
		<polymorphic_amplicon>AACGTGATCAGTATTCATTTGAGCTGCTGAAAAGCAGTTCGAATATAGAATTATCTACTGGAGTGGGTCCGGGCACTCCGTTACCCAGAAATTTTTCCCATTATGACAGTATACGTATCGCGCCATCTTCACAGTCAACGGTGGTGAAAAAACAGYCAGTTGTGCAGGTAAGAAACTTGAAATTTTGGAGTGTTAGTCATTATTGAACGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26660</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>56793</contig_pos>
        <strand>+</strand>
        <context>ATGATTGTAA[C/G]TTATRAGGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAA</left_flank>
        <right_flank>TTATGAGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATAAAAATGTTTAACACTCATATTTTCATCCAATTTTATTTGTTCATTCTTTGAATTCCTAGATTTTAAGGTTCTATTATTCATTTAAATTGGAAATTTCATTAATACCAGGGGTCAAATTCCTAGAAACCTGTCTTTGTACTGTCATTTCCAATTATCAGATTTTCAGCTGTCTGTCTTTGTTCTGTCTGTAATACTGTAAAACCTGCAATAGAAGGGCCCTCTGACTTTCAACTTTGAGCCAACTTATCTCGATTCCTGTGAAAGATATAAAAAATTACAACAACTGATAAATTGTTCACATGAAGTGAGATAATTGAGCGCAGATGTGACAGCGCGCTCTTCTATTATAGGTTTTACGGTTTTTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTATGAGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGTCACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTCATCTTCTGCCTATCCCACGATTTCAGCTCACATCAGCTCTTCTCCATTTTCAGAACTAGATCTCATTATAATTCCATTTTCTCTCTTCCAGCAAACTTCCCTTTCAATTATTTTATAATTTCCAGTAACTGCTCTTTTTGCTCATATTTTATGATGAGCGCTGAAAGTTTTCAACTCATTTCCAATTAATTTCTCTCAGCTCTCTGCTTCCATTTTTTGCATCCATTCGTTTTTTTTCTGTTTTGTCGGACACTGACATATTTATGTTGTCTCGTGTTGGCATATGGACAGGAGAGGCTTGGAGCAAAAAGACGCCAAAATTTTTCTTTCTTTTTCATTCGTCTGTTTTTTCGCAGAAAATGCTGAGAAGTACTCAGAATTTATT</canonical>
            <polymorphic>AAATAAAAATGTTTAACACTCATATTTTCATCCAATTTTATTTGTTCATTCTTTGAATTCCTAGATTTTAAGGTTCTATTATTCATTTAAATTGGAAATTTCATTAATACCAGGGGTCAAATTCCTAGAAACCTGTCTTTGTACTGTCATTTCCAATTATCAGATTTTCAGCTGTCTGTCTTTGTTCTGTCTGTAATACTGTAAAACCTGCAATAGAAGGGCCCTCTGACTTTCAACTTTGAGCCAACTTATCTCGATTCCTGTGAAAGATATAAAAAATTACAACAACTGATAAATTGTTCACATGAAGTGAGATAATTGAGCGCAGATGTGACAGCGCGCTCTTCTATTATAGGTTTTACGGTTTTTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAASTTATGAGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGTCACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTCATCTTCTGCCTATCCCACGATTTCAGCTCACATCAGCTCTTCTCCATTTTCAGAACTAGATCTCATTATAATTCCATTTTCTCTCTTCCAGCAAACTTCCCTTTCAATTATTTTATAATTTCCAGTAACTGCTCTTTTTGCTCATATTTTATGATGAGCGCTGAAAGTTTTCAACTCATTTCCAATTAATTTCTCTCAGCTCTCTGCTTCCATTTTTTGCATCCATTCGTTTTTTTTCTGTTTTGTCGGACACTGACATATTTATGTTGTCTCGTGTTGGCATATGGACAGGAGAGGCTTGGAGCAAAAAGACGCCAAAATTTTTCTTTCTTTTTCATTCGTCTGTTTTTTCGCAGAAAATGCTGAGAAGTACTCAGAATTTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>131 123 78 78 67 61 59 44 36 35 34 33 33 29 23 22 22 20 17 15 11 10 8 7 4</canonical_bands>
                <polymorphic_bands>131 123 78 78 77 67 61 59 36 35 34 33 29 23 22 22 20 17 15 11 10 8 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGAAGAATAAAAGGAGATTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAGAATTGTGAAATCTAAAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTATGAGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGTCACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAASTTATGAGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGTCACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26661</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>56798</contig_pos>
        <strand>+</strand>
        <context>TGTAASTTAT[A/G]AGGGAAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTAT</left_flank>
        <right_flank>AGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGTCACAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATGTTTAACACTCATATTTTCATCCAATTTTATTTGTTCATTCTTTGAATTCCTAGATTTTAAGGTTCTATTATTCATTTAAATTGGAAATTTCATTAATACCAGGGGTCAAATTCCTAGAAACCTGTCTTTGTACTGTCATTTCCAATTATCAGATTTTCAGCTGTCTGTCTTTGTTCTGTCTGTAATACTGTAAAACCTGCAATAGAAGGGCCCTCTGACTTTCAACTTTGAGCCAACTTATCTCGATTCCTGTGAAAGATATAAAAAATTACAACAACTGATAAATTGTTCACATGAAGTGAGATAATTGAGCGCAGATGTGACAGCGCGCTCTTCTATTATAGGTTTTACGGTTTTTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTATGAGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGTCACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTCATCTTCTGCCTATCCCACGATTTCAGCTCACATCAGCTCTTCTCCATTTTCAGAACTAGATCTCATTATAATTCCATTTTCTCTCTTCCAGCAAACTTCCCTTTCAATTATTTTATAATTTCCAGTAACTGCTCTTTTTGCTCATATTTTATGATGAGCGCTGAAAGTTTTCAACTCATTTCCAATTAATTTCTCTCAGCTCTCTGCTTCCATTTTTTGCATCCATTCGTTTTTTTTCTGTTTTGTCGGACACTGACATATTTATGTTGTCTCGTGTTGGCATATGGACAGGAGAGGCTTGGAGCAAAAAGACGCCAAAATTTTTCTTTCTTTTTCATTCGTCTGTTTTTTCGCAGAAAATGCTGAGAAGTACTCAGAATTTATTTCACC</canonical>
            <polymorphic>AAAATGTTTAACACTCATATTTTCATCCAATTTTATTTGTTCATTCTTTGAATTCCTAGATTTTAAGGTTCTATTATTCATTTAAATTGGAAATTTCATTAATACCAGGGGTCAAATTCCTAGAAACCTGTCTTTGTACTGTCATTTCCAATTATCAGATTTTCAGCTGTCTGTCTTTGTTCTGTCTGTAATACTGTAAAACCTGCAATAGAAGGGCCCTCTGACTTTCAACTTTGAGCCAACTTATCTCGATTCCTGTGAAAGATATAAAAAATTACAACAACTGATAAATTGTTCACATGAAGTGAGATAATTGAGCGCAGATGTGACAGCGCGCTCTTCTATTATAGGTTTTACGGTTTTTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTATRAGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGTCACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTCATCTTCTGCCTATCCCACGATTTCAGCTCACATCAGCTCTTCTCCATTTTCAGAACTAGATCTCATTATAATTCCATTTTCTCTCTTCCAGCAAACTTCCCTTTCAATTATTTTATAATTTCCAGTAACTGCTCTTTTTGCTCATATTTTATGATGAGCGCTGAAAGTTTTCAACTCATTTCCAATTAATTTCTCTCAGCTCTCTGCTTCCATTTTTTGCATCCATTCGTTTTTTTTCTGTTTTGTCGGACACTGACATATTTATGTTGTCTCGTGTTGGCATATGGACAGGAGAGGCTTGGAGCAAAAAGACGCCAAAATTTTTCTTTCTTTTTCATTCGTCTGTTTTTTCGCAGAAAATGCTGAGAAGTACTCAGAATTTATTTCACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGAAGAATAAAAGGAGATTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAGAATTGTGAAATCTAAAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTATGAGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGTCACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTATRAGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGTCACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26662</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>56926</contig_pos>
        <strand>+</strand>
        <context>GCCTATCCCR[A/G]GATTTCAGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGAGTTTTGTTTTAGATTTCACAATTCTTTCATCTTCTGCCTATCCCA</left_flank>
        <right_flank>GATTTCAGCTCACATCAGCTCTTCTCCATTTTCAGAACTAGATCTCATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTCTTTGTACTGTCATTTCCAATTATCAGATTTTCAGCTGTCTGTCTTTGTTCTGTCTGTAATACTGTAAAACCTGCAATAGAAGGGCCCTCTGACTTTCAACTTTGAGCCAACTTATCTCGATTCCTGTGAAAGATATAAAAAATTACAACAACTGATAAATTGTTCACATGAAGTGAGATAATTGAGCGCAGATGTGACAGCGCGCTCTTCTATTATAGGTTTTACGGTTTTTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTATGAGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGTCACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTCATCTTCTGCCTATCCCACGATTTCAGCTCACATCAGCTCTTCTCCATTTTCAGAACTAGATCTCATTATAATTCCATTTTCTCTCTTCCAGCAAACTTCCCTTTCAATTATTTTATAATTTCCAGTAACTGCTCTTTTTGCTCATATTTTATGATGAGCGCTGAAAGTTTTCAACTCATTTCCAATTAATTTCTCTCAGCTCTCTGCTTCCATTTTTTGCATCCATTCGTTTTTTTTCTGTTTTGTCGGACACTGACATATTTATGTTGTCTCGTGTTGGCATATGGACAGGAGAGGCTTGGAGCAAAAAGACGCCAAAATTTTTCTTTCTTTTTCATTCGTCTGTTTTTTCGCAGAAAATGCTGAGAAGTACTCAGAATTTATTTCACCTGTCCCCGCCAAAGTCACATTTTCTAATTTTTTTTGTCCCTCAAAATTTCAGTTTCTCGGTTTTCTTGGGGCTTTTGTGATTTTTACGAAACTTTTTCTCTCTCCCCAAACATGTGACTTCCTCTTAT</canonical>
            <polymorphic>TGTCTTTGTACTGTCATTTCCAATTATCAGATTTTCAGCTGTCTGTCTTTGTTCTGTCTGTAATACTGTAAAACCTGCAATAGAAGGGCCCTCTGACTTTCAACTTTGAGCCAACTTATCTCGATTCCTGTGAAAGATATAAAAAATTACAACAACTGATAAATTGTTCACATGAAGTGAGATAATTGAGCGCAGATGTGACAGCGCGCTCTTCTATTATAGGTTTTACGGTTTTTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTATGAGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGTCACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTCATCTTCTGCCTATCCCARGATTTCAGCTCACATCAGCTCTTCTCCATTTTCAGAACTAGATCTCATTATAATTCCATTTTCTCTCTTCCAGCAAACTTCCCTTTCAATTATTTTATAATTTCCAGTAACTGCTCTTTTTGCTCATATTTTATGATGAGCGCTGAAAGTTTTCAACTCATTTCCAATTAATTTCTCTCAGCTCTCTGCTTCCATTTTTTGCATCCATTCGTTTTTTTTCTGTTTTGTCGGACACTGACATATTTATGTTGTCTCGTGTTGGCATATGGACAGGAGAGGCTTGGAGCAAAAAGACGCCAAAATTTTTCTTTCTTTTTCATTCGTCTGTTTTTTCGCAGAAAATGCTGAGAAGTACTCAGAATTTATTTCACCTGTCCCCGCCAAAGTCACATTTTCTAATTTTTTTTGTCCCTCAAAATTTCAGTTTCTCGGTTTTCTTGGGGCTTTTGTGATTTTTACGAAACTTTTTCTCTCTCCCCAAACATGTGACTTCCTCTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>222 132 116 112 103 62 53 38 37 27 24 21 19 13 12 9</canonical_bands>
                <polymorphic_bands>222 132 116 112 103 62 53 40 38 37 24 21 19 12 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAGAATAAAAGGAGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGCTGGAAGAGAGAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTATGAGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGTCACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTCATCTTCTGCCTATCCCACGATTTCAGCTCACATCAGCTCTTCTCCATTTTCAGAACTAGATCTCATTATAATTCCATTTTCTCTCTTCCAGCAA</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAGAATAAAAGGAGATTTTTATAAATTTTTTTTGGAGTTACAGTATGCATTTCGACGTAGCGGTGTACAATGATTAGCTTGTCAAATTCCAGAAAATTAGTATTTTTAATATCTGAAAATGATTGTAAATTATGAGGGAAAAATCAGCATCAATCATTTCGTAAGATCATGAATTTTGTCACAGATTTCAAAATTTATTTTTGGACAATTTTTTGAGTTTTGTTTTAGATTTCACAATTCTTTCATCTTCTGCCTATCCCARGATTTCAGCTCACATCAGCTCTTCTCCATTTTCAGAACTAGATCTCATTATAATTCCATTTTCTCTCTTCCAGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26663</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>107597</contig_pos>
        <strand>+</strand>
        <context>AACAATTATA[G/T]TARTTTATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATTGATAAATGCCAGCAAGAGGCTTTTGAAATCTTCAATAACAATTATA</left_flank>
        <right_flank>TAATTTATTTCTCTCTTTTTATGTAAATAAATAAATAAATAAAAATCATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATGTTTGGCTCTTGTTTGGATCCCTAATTATCCAAAATACACAATTGGCGAGTCTGGAGCACTTGAGTGGGTTGAAATACATTTTGAAACTTGATGGTTTGTATTGTTTTGAAATCGATGAAATTTAAAAAATTTATAGAAAACTCGCCATTGATTCAAATAGTTTCCAACCCGAAACTTAAGAAAACAACACTTCTCAGTTTAGAGGTAACATCATAAGACTACTTGAAAAATGAAGGACTTTTACAGCACATAATAGCTCGAGGAAATAGATCGGTCATTCTACAGGACAACATTTTTGTACGCAACAACTCCAAAAAGTGCAATATTTTAGACAAATGGAGTATGTTCAAGAAACAGTTAAATCTGGACTATACGGGAAGTGACTGTGGTAAGTTGTCTTGAACTGTCAGATTGAGTTTACATAATTTATTTCAGGAAATCGTGTATTGATAAATGCCAGCAAGAGGCTTTTGAAATCTTCAATAACAATTATATTAATTTATTTCTCTCTTTTTATGTAAATAAATAAATAAATAAAAATCATTCACTGATAGGATGTCTGGAAGAGTCCACCCGATTATTAAAGGGTTCCACTCTGTTTCCTCTTTTTGAAAACAATTTCAGCACAGTATCACGATATTGAGAAGACAAGAAGAAACATAGAATACTGTGGATTGTGGAGTTGACAATGAGAAGCGTCAAGGTGAACGAGTCGAACTTCTCAAAGTCTTTTCTGAAAGTCAAACAAACATCGCCCATTGATTGATTAACAACGTTACCCGTCTTTGTAATCATAAAGTTTATAATAACTCCACATAAATAATGCGCCGTATACGGTTTCAGAAATGAATACAGTTATAGCCATTGTCACGATTAATTTAGATGTGTTGTTTGGTGTTCTGAATTAAGCTTTGTCTTACAATATCCAGGCCAACTACTGTCAGATGCATAACTCGGTCCAATCTTGGAATTTCATCTCGAAGCAAACAGTAGAA</canonical>
            <polymorphic>GGATGTTTGGCTCTTGTTTGGATCCCTAATTATCCAAAATACACAATTGGCGAGTCTGGAGCACTTGAGTGGGTTGAAATACATTTTGAAACTTGATGGTTTGTATTGTTTTGAAATCGATGAAATTTAAAAAATTTATAGAAAACTCGCCATTGATTCAAATAGTTTCCAACCCGAAACTTAAGAAAACAACACTTCTCAGTTTAGAGGTAACATCATAAGACTACTTGAAAAATGAAGGACTTTTACAGCACATAATAGCTCGAGGAAATAGATCGGTCATTCTACAGGACAACATTTTTGTACGCAACAACTCCAAAAAGTGCAATATTTTAGACAAATGGAGTATGTTCAAGAAACAGTTAAATCTGGACTATACGGGAAGTGACTGTGGTAAGTTGTCTTGAACTGTCAGATTGAGTTTACATAATTTATTTCAGGAAATCGTGTATTGATAAATGCCAGCAAGAGGCTTTTGAAATCTTCAATAACAATTATAKTAATTTATTTCTCTCTTTTTATGTAAATAAATAAATAAATAAAAATCATTCACTGATAGGATGTCTGGAAGAGTCCACCCGATTATTAAAGGGTTCCACTCTGTTTCCTCTTTTTGAAAACAATTTCAGCACAGTATCACGATATTGAGAAGACAAGAAGAAACATAGAATACTGTGGATTGTGGAGTTGACAATGAGAAGCGTCAAGGTGAACGAGTCGAACTTCTCAAAGTCTTTTCTGAAAGTCAAACAAACATCGCCCATTGATTGATTAACAACGTTACCCGTCTTTGTAATCATAAAGTTTATAATAACTCCACATAAATAATGCGCCGTATACGGTTTCAGAAATGAATACAGTTATAGCCATTGTCACGATTAATTTAGATGTGTTGTTTGGTGTTCTGAATTAAGCTTTGTCTTACAATATCCAGGCCAACTACTGTCAGATGCATAACTCGGTCCAATCTTGGAATTTCATCTCGAAGCAAACAGTAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 379 121</canonical_bands>
                <polymorphic_bands>879 121</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>186 182 137 127 107 90 86 54 31</canonical_bands>
                <polymorphic_bands>223 186 182 127 107 90 54 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGGTAAGTTGTCTTGAACTGTC</pcr_primer_p1>
		<pcr_primer_p2>GTGATACTGTGCTGAAATTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGGTAAGTTGTCTTGAACTGTCAGATTGAGTTTACATAATTTATTTCAGGAAATCGTGTATTGATAAATGCCAGCAAGAGGCTTTTGAAATCTTCAATAACAATTATATTAATTTATTTCTCTCTTTTTATGTAAATAAATAAATAAATAAAAATCATTCACTGATAGGATGTCTGGAAGAGTCCACCCGATTATTAAAGGGTTCCACTCTGTTTCCTCTTTTTGAAAACAATTTCAGCACAGTATCAC</canonical_amplicon>
		<polymorphic_amplicon>GTGGTAAGTTGTCTTGAACTGTCAGATTGAGTTTACATAATTTATTTCAGGAAATCGTGTATTGATAAATGCCAGCAAGAGGCTTTTGAAATCTTCAATAACAATTATAKTAATTTATTTCTCTCTTTTTATGTAAATAAATAAATAAATAAAAATCATTCACTGATAGGATGTCTGGAAGAGTCCACCCGATTATTAAAGGGTTCCACTCTGTTTCCTCTTTTTGAAAACAATTTCAGCACAGTATCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26664</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>107600</contig_pos>
        <strand>+</strand>
        <context>AATTATAKTA[A/G]TTTATTTCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATAAATGCCAGCAAGAGGCTTTTGAAATCTTCAATAACAATTATATTA</left_flank>
        <right_flank>TTTATTTCTCTCTTTTTATGTAAATAAATAAATAAATAAAAATCATTCAC</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTTGGCTCTTGTTTGGATCCCTAATTATCCAAAATACACAATTGGCGAGTCTGGAGCACTTGAGTGGGTTGAAATACATTTTGAAACTTGATGGTTTGTATTGTTTTGAAATCGATGAAATTTAAAAAATTTATAGAAAACTCGCCATTGATTCAAATAGTTTCCAACCCGAAACTTAAGAAAACAACACTTCTCAGTTTAGAGGTAACATCATAAGACTACTTGAAAAATGAAGGACTTTTACAGCACATAATAGCTCGAGGAAATAGATCGGTCATTCTACAGGACAACATTTTTGTACGCAACAACTCCAAAAAGTGCAATATTTTAGACAAATGGAGTATGTTCAAGAAACAGTTAAATCTGGACTATACGGGAAGTGACTGTGGTAAGTTGTCTTGAACTGTCAGATTGAGTTTACATAATTTATTTCAGGAAATCGTGTATTGATAAATGCCAGCAAGAGGCTTTTGAAATCTTCAATAACAATTATATTAATTTATTTCTCTCTTTTTATGTAAATAAATAAATAAATAAAAATCATTCACTGATAGGATGTCTGGAAGAGTCCACCCGATTATTAAAGGGTTCCACTCTGTTTCCTCTTTTTGAAAACAATTTCAGCACAGTATCACGATATTGAGAAGACAAGAAGAAACATAGAATACTGTGGATTGTGGAGTTGACAATGAGAAGCGTCAAGGTGAACGAGTCGAACTTCTCAAAGTCTTTTCTGAAAGTCAAACAAACATCGCCCATTGATTGATTAACAACGTTACCCGTCTTTGTAATCATAAAGTTTATAATAACTCCACATAAATAATGCGCCGTATACGGTTTCAGAAATGAATACAGTTATAGCCATTGTCACGATTAATTTAGATGTGTTGTTTGGTGTTCTGAATTAAGCTTTGTCTTACAATATCCAGGCCAACTACTGTCAGATGCATAACTCGGTCCAATCTTGGAATTTCATCTCGAAGCAAACAGTAGAATAT</canonical>
            <polymorphic>TGTTTGGCTCTTGTTTGGATCCCTAATTATCCAAAATACACAATTGGCGAGTCTGGAGCACTTGAGTGGGTTGAAATACATTTTGAAACTTGATGGTTTGTATTGTTTTGAAATCGATGAAATTTAAAAAATTTATAGAAAACTCGCCATTGATTCAAATAGTTTCCAACCCGAAACTTAAGAAAACAACACTTCTCAGTTTAGAGGTAACATCATAAGACTACTTGAAAAATGAAGGACTTTTACAGCACATAATAGCTCGAGGAAATAGATCGGTCATTCTACAGGACAACATTTTTGTACGCAACAACTCCAAAAAGTGCAATATTTTAGACAAATGGAGTATGTTCAAGAAACAGTTAAATCTGGACTATACGGGAAGTGACTGTGGTAAGTTGTCTTGAACTGTCAGATTGAGTTTACATAATTTATTTCAGGAAATCGTGTATTGATAAATGCCAGCAAGAGGCTTTTGAAATCTTCAATAACAATTATATTARTTTATTTCTCTCTTTTTATGTAAATAAATAAATAAATAAAAATCATTCACTGATAGGATGTCTGGAAGAGTCCACCCGATTATTAAAGGGTTCCACTCTGTTTCCTCTTTTTGAAAACAATTTCAGCACAGTATCACGATATTGAGAAGACAAGAAGAAACATAGAATACTGTGGATTGTGGAGTTGACAATGAGAAGCGTCAAGGTGAACGAGTCGAACTTCTCAAAGTCTTTTCTGAAAGTCAAACAAACATCGCCCATTGATTGATTAACAACGTTACCCGTCTTTGTAATCATAAAGTTTATAATAACTCCACATAAATAATGCGCCGTATACGGTTTCAGAAATGAATACAGTTATAGCCATTGTCACGATTAATTTAGATGTGTTGTTTGGTGTTCTGAATTAAGCTTTGTCTTACAATATCCAGGCCAACTACTGTCAGATGCATAACTCGGTCCAATCTTGGAATTTCATCTCGAAGCAAACAGTAGAATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>497 379 124</canonical_bands>
                <polymorphic_bands>876 124</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>186 182 137 124 107 93 86 54 31</canonical_bands>
                <polymorphic_bands>223 186 182 124 107 93 54 31</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>296 259 120 79 66 64 30 27 24 17 9 9</canonical_bands>
                <polymorphic_bands>296 259 129 79 66 64 30 27 24 17 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGGTAAGTTGTCTTGAACTGTC</pcr_primer_p1>
		<pcr_primer_p2>GTGATACTGTGCTGAAATTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGGTAAGTTGTCTTGAACTGTCAGATTGAGTTTACATAATTTATTTCAGGAAATCGTGTATTGATAAATGCCAGCAAGAGGCTTTTGAAATCTTCAATAACAATTATATTAATTTATTTCTCTCTTTTTATGTAAATAAATAAATAAATAAAAATCATTCACTGATAGGATGTCTGGAAGAGTCCACCCGATTATTAAAGGGTTCCACTCTGTTTCCTCTTTTTGAAAACAATTTCAGCACAGTATCAC</canonical_amplicon>
		<polymorphic_amplicon>GTGGTAAGTTGTCTTGAACTGTCAGATTGAGTTTACATAATTTATTTCAGGAAATCGTGTATTGATAAATGCCAGCAAGAGGCTTTTGAAATCTTCAATAACAATTATATTARTTTATTTCTCTCTTTTTATGTAAATAAATAAATAAATAAAAATCATTCACTGATAGGATGTCTGGAAGAGTCCACCCGATTATTAAAGGGTTCCACTCTGTTTCCTCTTTTTGAAAACAATTTCAGCACAGTATCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26665</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>188734</contig_pos>
        <strand>+</strand>
        <context>AAAATTCCCA[A/T]ATTCCAAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTCCATGGAATAATCAGTGCACCAACTCAAGTCAATCTCAAAATTCCCA</left_flank>
        <right_flank>ATTCCAAACATGTATCGTTTCCCAACATATGAACGTCTTCAGGGAAAATC</right_flank>
        <qual_score>130</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTTTTTATTGCAGAGTCAACTCAATTATGTTGGGAGCTCCAAATTGGAATGAAGCCGGTAATGGGACCAGGGTAAGGCTTCCGTTCGGTCGGGGGAATTTAGCCGACCTACCGACCGCCGACCCAGCGAACCGACAGACCAGCCGAGCTGACCGATCGGTCGACGCGCGGGCCAGGTCGGTCAACTGGGTCGGTTGGCGGTTGACGATTTTGGACCGACGAAAGTAAAAGCCTCTGACCAGGATCCGGATAAGGAGTCCAGAGACAGCAAAATAATTTTGTTCGGACAACGGACGGCCTGACCGGGGAACAACGGACTGTCCGTACATCTCTAGATGGGACCATGTTCGTCTTGTTGGGACTTTGGGACCCATGATCACACCATGACCAACTATCCCAATTTACGACCTCTCATATGGGATAGACCCTATAACTTACAACATCAACTGCTCCATGGAATAATCAGTGCACCAACTCAAGTCAATCTCAAAATTCCCAAATTCCAAACATGTATCGTTTCCCAACATATGAACGTCTTCAGGGAAAATCTGTTTCCTTTGATAGTCGGCAGTTTCAGATAGCTTTTCTAGACGAATCCAACCGAACCAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGACTATTCTGATATTGATAAGGTCTGCAGTTGATGGAGGGTGGCTGAAAAATAGTGAGTAAGAAGTTTCTAGCTCTATTTGAACCTGATGAAAAATCCAATTAGTCTTATTCACGAGGTAAGTCACATCTATAACGGTGTTTCTGAA</canonical>
            <polymorphic>TCCTTTTTATTGCAGAGTCAACTCAATTATGTTGGGAGCTCCAAATTGGAATGAAGCCGGTAATGGGACCAGGGTAAGGCTTCCGTTCGGTCGGGGGAATTTAGCCGACCTACCGACCGCCGACCCAGCGAACCGACAGACCAGCCGAGCTGACCGATCGGTCGACGCGCGGGCCAGGTCGGTCAACTGGGTCGGTTGGCGGTTGACGATTTTGGACCGACGAAAGTAAAAGCCTCTGACCAGGATCCGGATAAGGAGTCCAGAGACAGCAAAATAATTTTGTTCGGACAACGGACGGCCTGACCGGGGAACAACGGACTGTCCGTACATCTCTAGATGGGACCATGTTCGTCTTGTTGGGACTTTGGGACCCATGATCACACCATGACCAACTATCCCAATTTACGACCTCTCATATGGGATAGACCCTATAACTTACAACATCAACTGCTCCATGGAATAATCAGTGCACCAACTCAAGTCAATCTCAAAATTCCCAWATTCCAAACATGTATCGTTTCCCAACATATGAACGTCTTCAGGGAAAATCTGTTTCCTTTGATAGTCGGCAGTTTCAGATAGCTTTTCTAGACGAATCCAACCGAACCAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGACTATTCTGATATTGATAAGGTCTGCAGTTGATGGAGGGTGGCTGAAAAATAGTGAGTAAGAAGTTTCTAGCTCTATTTGAACCTGATGAAAAATCCAATTAGTCTTATTCACGAGGTAAGTCACATCTATAACGGTGTTTCTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>394 291 210 97 8</canonical_bands>
                <polymorphic_bands>394 291 218 97</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>210 178 165 124 92 54 53 49 24 24 19 8</canonical_bands>
                <polymorphic_bands>218 178 165 124 92 54 53 49 24 24 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCACACCATGACCAACTAT</pcr_primer_p1>
		<pcr_primer_p2>GATAATAAAAACCGCCTGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCACACCATGACCAACTATCCCAATTTACGACCTCTCATATGGGATAGACCCTATAACTTACAACATCAACTGCTCCATGGAATAATCAGTGCACCAACTCAAGTCAATCTCAAAATTCCCAAATTCCAAACATGTATCGTTTCCCAACATATGAACGTCTTCAGGGAAAATCTGTTTCCTTTGATAGTCGGCAGTTTCAGATAGCTTTTCTAGACGAATCCAACCGAACCAGGCGGTTTTTATTATC</canonical_amplicon>
		<polymorphic_amplicon>GATCACACCATGACCAACTATCCCAATTTACGACCTCTCATATGGGATAGACCCTATAACTTACAACATCAACTGCTCCATGGAATAATCAGTGCACCAACTCAAGTCAATCTCAAAATTCCCAWATTCCAAACATGTATCGTTTCCCAACATATGAACGTCTTCAGGGAAAATCTGTTTCCTTTGATAGTCGGCAGTTTCAGATAGCTTTTCTAGACGAATCCAACCGAACCAGGCGGTTTTTATTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26666</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>189244</contig_pos>
        <strand>+</strand>
        <context>ATGTAGCTTT[A/G]TCGGGTTCAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATTCACGAGGTAAGTCACATCTATAACGGTGTTTCTGAATGTAGCTTT</left_flank>
        <right_flank>TCGGGTTCACAGCACAAAATGAAGCTTGGTCGGCCCAGGAAATTTGATAA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTATCGTTTCCCAACATATGAACGTCTTCAGGGAAAATCTGTTTCCTTTGATAGTCGGCAGTTTCAGATAGCTTTTCTAGACGAATCCAACCGAACCAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGACTATTCTGATATTGATAAGGTCTGCAGTTGATGGAGGGTGGCTGAAAAATAGTGAGTAAGAAGTTTCTAGCTCTATTTGAACCTGATGAAAAATCCAATTAGTCTTATTCACGAGGTAAGTCACATCTATAACGGTGTTTCTGAATGTAGCTTTATCGGGTTCACAGCACAAAATGAAGCTTGGTCGGCCCAGGAAATTTGATAAACTTTGCGGGGACGATGCTATGAAATTTTGGCGTTTTGAAAAATTGCTCGAGCAGGAGATCAAGTCGCGATTGTTTTGGAATTCTGTAAAAGTCAATTTTGAAGCTTTTATGGGTTTTGAGCACTCCGACCCCTAAGATAATCTACCCTTGAGGTACCGTATCCGTAAGATACTGTACCCTTGAGTTATCTTAATCCCTCTTCTACATACGAGTGACTGACAGTGACAAAAATTTAAAACTCACTTTTCACGTCCATACCAGCTTCATAGCATTTTTTCAGCCTACATCTTTTACATTGAAATCTGCAACAGGGTGAGATTGTAAGGCTATTGTCTTTACGTGTCCCTCGTTTTTGAGGGTTCCATATTTTTCCCAGGCTATCCTAGACTGGTTGAAACCTTTCAAACTTCTTGGGACCCACAAGACTAAGTCAGAGCAACAATTTCAAT</canonical>
            <polymorphic>TGTATCGTTTCCCAACATATGAACGTCTTCAGGGAAAATCTGTTTCCTTTGATAGTCGGCAGTTTCAGATAGCTTTTCTAGACGAATCCAACCGAACCAGGCGGTTTTTATTATCTCTAGCTGAAAGTTATTCTGATATTCAAGTTCATTCGAAACTCTAGTACCTTTATATAATCTTCCAGTTCTTGAAACTCTGAAAAATTCGAAAACCATTCAACAGCTCTTAAAAACGACTGCTCCAGGATATACATCAATTCCTCTTTTCCCAGTCTTCTCAATTGCATGATTTTTTGATCCGGATGTTTTGTCCTCAACTCGTCTAAACTAAATGCCAGTTTTTCTAGACTATTCTGATATTGATAAGGTCTGCAGTTGATGGAGGGTGGCTGAAAAATAGTGAGTAAGAAGTTTCTAGCTCTATTTGAACCTGATGAAAAATCCAATTAGTCTTATTCACGAGGTAAGTCACATCTATAACGGTGTTTCTGAATGTAGCTTTRTCGGGTTCACAGCACAAAATGAAGCTTGGTCGGCCCAGGAAATTTGATAAACTTTGCGGGGACGATGCTATGAAATTTTGGCGTTTTGAAAAATTGCTCGAGCAGGAGATCAAGTCGCGATTGTTTTGGAATTCTGTAAAAGTCAATTTTGAAGCTTTTATGGGTTTTGAGCACTCCGACCCCTAAGATAATCTACCCTTGAGGTACCGTATCCGTAAGATACTGTACCCTTGAGTTATCTTAATCCCTCTTCTACATACGAGTGACTGACAGTGACAAAAATTTAAAACTCACTTTTCACGTCCATACCAGCTTCATAGCATTTTTTCAGCCTACATCTTTTACATTGAAATCTGCAACAGGGTGAGATTGTAAGGCTATTGTCTTTACGTGTCCCTCGTTTTTGAGGGTTCCATATTTTTCCCAGGCTATCCTAGACTGGTTGAAACCTTTCAAACTTCTTGGGACCCACAAGACTAAGTCAGAGCAACAATTTCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTTGAACCTGATGAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAACCCATAAAAGCTTCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATTTGAACCTGATGAAAAATCCAATTAGTCTTATTCACGAGGTAAGTCACATCTATAACGGTGTTTCTGAATGTAGCTTTATCGGGTTCACAGCACAAAATGAAGCTTGGTCGGCCCAGGAAATTTGATAAACTTTGCGGGGACGATGCTATGAAATTTTGGCGTTTTGAAAAATTGCTCGAGCAGGAGATCAAGTCGCGATTGTTTTGGAATTCTGTAAAAGTCAATTTTGAAGCTTTTATGGGTTT</canonical_amplicon>
		<polymorphic_amplicon>CTATTTGAACCTGATGAAAAATCCAATTAGTCTTATTCACGAGGTAAGTCACATCTATAACGGTGTTTCTGAATGTAGCTTTRTCGGGTTCACAGCACAAAATGAAGCTTGGTCGGCCCAGGAAATTTGATAAACTTTGCGGGGACGATGCTATGAAATTTTGGCGTTTTGAAAAATTGCTCGAGCAGGAGATCAAGTCGCGATTGTTTTGGAATTCTGTAAAAGTCAATTTTGAAGCTTTTATGGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26667</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>190757</contig_pos>
        <strand></strand>
        <context>tctcagaatc[A/G]cagagtttta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATC</left_flank>
        <right_flank>CAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCC</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTATCAGATTATCAATTTTCATCATTTTGGCAAGACGTGTCGAGTAGTTGGAGATTCGTTCTTGTTCATAATAATGGTGAAGATTGTTCGAAATGCCTTCCATTAGTTTATCGGTGAATTTCAGCACTTCACCTTGGTGTTTCTTTCCAGCATAGTGGAGGCAGAGCTCAATGAGCATGTAGTTTAATTCAATGTACCGTGGGATTTAGGTCAATTAGGAGGTCGACAATTTTGTTGAAATATTCATCGTGGTGACAGTCGAGGTAGCTGGAAAATTTGGAAAGTTAGGAACTTGGGAGAATAGAAATCGATGAACCTAGAAACCTAGAAATTCAGAAATCAGAGAATCTCAGAATATCAGAATCCAGGAATCCGGGATTCTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCC</canonical>
            <polymorphic>CGTATCAGATTATCAATTTTCATCATTTTGGCAAGACGTGTCGAGTAGTTGGAGATTCGTTCTTGTTCATAATAATGGTGAAGATTGTTCGAAATGCCTTCCATTAGTTTATCGGTGAATTTCAGCACTTCACCTTGGTGTTTCTTTCCAGCATAGTGGAGGCAGAGCTCAATGAGCATGTAGTTTAATTCAATGTACCGTGGGATTTAGGTCAATTAGGAGGTCGACAATTTTGTTGAAATATTCATCGTGGTGACAGTCGAGGTAGCTGGAAAATTTGGAAAGTTAGGAACTTGGGAGAATAGAAATCGATGAACCTAGAAACCTAGAAATTCAGAAATCAGAGAATCTCAGAATATCAGAATCCAGGAATCCGGGATTCTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCRCAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>245 231 104 68 50 44 41 40 40 37 33 23 18 10 8 5 3</canonical_bands>
                <polymorphic_bands>476 104 68 50 44 41 40 40 37 33 23 18 10 8 5 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGGAATCGAGGAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAGTTGGTTTAGTGAGTTTTTATATT</pcr_primer_p2>
		<pcr_amplicon_size>362</pcr_amplicon_size>
		<canonical_amplicon>CTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTG</canonical_amplicon>
		<polymorphic_amplicon>CTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCRCAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26668</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>190782</contig_pos>
        <strand></strand>
        <context>atgggtatct[C/T]agaatctcag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCT</left_flank>
        <right_flank>AGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAA</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGGCAAGACGTGTCGAGTAGTTGGAGATTCGTTCTTGTTCATAATAATGGTGAAGATTGTTCGAAATGCCTTCCATTAGTTTATCGGTGAATTTCAGCACTTCACCTTGGTGTTTCTTTCCAGCATAGTGGAGGCAGAGCTCAATGAGCATGTAGTTTAATTCAATGTACCGTGGGATTTAGGTCAATTAGGAGGTCGACAATTTTGTTGAAATATTCATCGTGGTGACAGTCGAGGTAGCTGGAAAATTTGGAAAGTTAGGAACTTGGGAGAATAGAAATCGATGAACCTAGAAACCTAGAAATTCAGAAATCAGAGAATCTCAGAATATCAGAATCCAGGAATCCGGGATTCTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTAT</canonical>
            <polymorphic>TTTTGGCAAGACGTGTCGAGTAGTTGGAGATTCGTTCTTGTTCATAATAATGGTGAAGATTGTTCGAAATGCCTTCCATTAGTTTATCGGTGAATTTCAGCACTTCACCTTGGTGTTTCTTTCCAGCATAGTGGAGGCAGAGCTCAATGAGCATGTAGTTTAATTCAATGTACCGTGGGATTTAGGTCAATTAGGAGGTCGACAATTTTGTTGAAATATTCATCGTGGTGACAGTCGAGGTAGCTGGAAAATTTGGAAAGTTAGGAACTTGGGAGAATAGAAATCGATGAACCTAGAAACCTAGAAATTCAGAAATCAGAGAATCTCAGAATATCAGAATCCAGGAATCCGGGATTCTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTYAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>311 113 100 53 45 45 40 32 32 24 16 16 16 16 16 16 16 12 10 8 8 8 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>311 113 100 53 45 45 40 40 32 24 16 16 16 16 16 16 16 12 10 8 8 8 8 8 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGGAATCGAGGAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAGTTGGTTTAGTGAGTTTTTATATT</pcr_primer_p2>
		<pcr_amplicon_size>362</pcr_amplicon_size>
		<canonical_amplicon>CTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTG</canonical_amplicon>
		<polymorphic_amplicon>CTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTYAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26669</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>190794</contig_pos>
        <strand></strand>
        <context>gaatctcaga[T/A]tttcagattt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGA</left_flank>
        <right_flank>TTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATC</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTCGAGTAGTTGGAGATTCGTTCTTGTTCATAATAATGGTGAAGATTGTTCGAAATGCCTTCCATTAGTTTATCGGTGAATTTCAGCACTTCACCTTGGTGTTTCTTTCCAGCATAGTGGAGGCAGAGCTCAATGAGCATGTAGTTTAATTCAATGTACCGTGGGATTTAGGTCAATTAGGAGGTCGACAATTTTGTTGAAATATTCATCGTGGTGACAGTCGAGGTAGCTGGAAAATTTGGAAAGTTAGGAACTTGGGAGAATAGAAATCGATGAACCTAGAAACCTAGAAATTCAGAAATCAGAGAATCTCAGAATATCAGAATCCAGGAATCCGGGATTCTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTATATTGGTTCCTGT</canonical>
            <polymorphic>GTGTCGAGTAGTTGGAGATTCGTTCTTGTTCATAATAATGGTGAAGATTGTTCGAAATGCCTTCCATTAGTTTATCGGTGAATTTCAGCACTTCACCTTGGTGTTTCTTTCCAGCATAGTGGAGGCAGAGCTCAATGAGCATGTAGTTTAATTCAATGTACCGTGGGATTTAGGTCAATTAGGAGGTCGACAATTTTGTTGAAATATTCATCGTGGTGACAGTCGAGGTAGCTGGAAAATTTGGAAAGTTAGGAACTTGGGAGAATAGAAATCGATGAACCTAGAAACCTAGAAATTCAGAAATCAGAGAATCTCAGAATATCAGAATCCAGGAATCCGGGATTCTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGAWTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTATATTGGTTCCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGGAATCGAGGAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAGTTGGTTTAGTGAGTTTTTATATT</pcr_primer_p2>
		<pcr_amplicon_size>362</pcr_amplicon_size>
		<canonical_amplicon>CTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTG</canonical_amplicon>
		<polymorphic_amplicon>CTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGAWTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26670</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>190826</contig_pos>
        <strand></strand>
        <context>gaacttcaga[A/T]tttcaagata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGA</left_flank>
        <right_flank>TTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATAATGGTGAAGATTGTTCGAAATGCCTTCCATTAGTTTATCGGTGAATTTCAGCACTTCACCTTGGTGTTTCTTTCCAGCATAGTGGAGGCAGAGCTCAATGAGCATGTAGTTTAATTCAATGTACCGTGGGATTTAGGTCAATTAGGAGGTCGACAATTTTGTTGAAATATTCATCGTGGTGACAGTCGAGGTAGCTGGAAAATTTGGAAAGTTAGGAACTTGGGAGAATAGAAATCGATGAACCTAGAAACCTAGAAATTCAGAAATCAGAGAATCTCAGAATATCAGAATCCAGGAATCCGGGATTCTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTATATTGGTTCCTGTGAGAGATGCCTAAAGGAGGCCAGACACCAAAA</canonical>
            <polymorphic>TAATAATGGTGAAGATTGTTCGAAATGCCTTCCATTAGTTTATCGGTGAATTTCAGCACTTCACCTTGGTGTTTCTTTCCAGCATAGTGGAGGCAGAGCTCAATGAGCATGTAGTTTAATTCAATGTACCGTGGGATTTAGGTCAATTAGGAGGTCGACAATTTTGTTGAAATATTCATCGTGGTGACAGTCGAGGTAGCTGGAAAATTTGGAAAGTTAGGAACTTGGGAGAATAGAAATCGATGAACCTAGAAACCTAGAAATTCAGAAATCAGAGAATCTCAGAATATCAGAATCCAGGAATCCGGGATTCTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAWTTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTATATTGGTTCCTGTGAGAGATGCCTAAAGGAGGCCAGACACCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>157 155 152 131 88 85 80 56 48 24 24</canonical_bands>
                <polymorphic_bands>176 157 155 131 88 85 80 56 48 24</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>155 152 88 85 69 67 56 55 51 48 46 29 27 24 24 15 9</canonical_bands>
                <polymorphic_bands>176 155 88 85 69 67 56 55 51 48 46 29 27 24 15 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGGAATCGAGGAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAGTTGGTTTAGTGAGTTTTTATATT</pcr_primer_p2>
		<pcr_amplicon_size>362</pcr_amplicon_size>
		<canonical_amplicon>CTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTG</canonical_amplicon>
		<polymorphic_amplicon>CTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAWTTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26671</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>190843</contig_pos>
        <strand></strand>
        <context>gatatcagaa[T/C]yycagaattt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAA</left_flank>
        <right_flank>CCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCC</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCGAAATGCCTTCCATTAGTTTATCGGTGAATTTCAGCACTTCACCTTGGTGTTTCTTTCCAGCATAGTGGAGGCAGAGCTCAATGAGCATGTAGTTTAATTCAATGTACCGTGGGATTTAGGTCAATTAGGAGGTCGACAATTTTGTTGAAATATTCATCGTGGTGACAGTCGAGGTAGCTGGAAAATTTGGAAAGTTAGGAACTTGGGAGAATAGAAATCGATGAACCTAGAAACCTAGAAATTCAGAAATCAGAGAATCTCAGAATATCAGAATCCAGGAATCCGGGATTCTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTATATTGGTTCCTGTGAGAGATGCCTAAAGGAGGCCAGACACCAAAAAAGTTTTCCTGATATTT</canonical>
            <polymorphic>GTTCGAAATGCCTTCCATTAGTTTATCGGTGAATTTCAGCACTTCACCTTGGTGTTTCTTTCCAGCATAGTGGAGGCAGAGCTCAATGAGCATGTAGTTTAATTCAATGTACCGTGGGATTTAGGTCAATTAGGAGGTCGACAATTTTGTTGAAATATTCATCGTGGTGACAGTCGAGGTAGCTGGAAAATTTGGAAAGTTAGGAACTTGGGAGAATAGAAATCGATGAACCTAGAAACCTAGAAATTCAGAAATCAGAGAATCTCAGAATATCAGAATCCAGGAATCCGGGATTCTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAAYCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTATATTGGTTCCTGTGAGAGATGCCTAAAGGAGGCCAGACACCAAAAAAGTTTTCCTGATATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>299 260 92 56 56 40 32 24 24 16 16 13 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>299 260 92 80 56 40 32 24 16 16 13 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>299 260 92 56 56 40 32 24 24 16 16 13 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>299 260 92 80 56 40 32 24 16 16 13 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGGAATCGAGGAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAGTTGGTTTAGTGAGTTTTTATATT</pcr_primer_p2>
		<pcr_amplicon_size>362</pcr_amplicon_size>
		<canonical_amplicon>CTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTG</canonical_amplicon>
		<polymorphic_amplicon>CTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAAYCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26672</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>190844</contig_pos>
        <strand></strand>
        <context>atatcagaay[C/T]ycagaatttc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAAT</left_flank>
        <right_flank>CCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGAAATGCCTTCCATTAGTTTATCGGTGAATTTCAGCACTTCACCTTGGTGTTTCTTTCCAGCATAGTGGAGGCAGAGCTCAATGAGCATGTAGTTTAATTCAATGTACCGTGGGATTTAGGTCAATTAGGAGGTCGACAATTTTGTTGAAATATTCATCGTGGTGACAGTCGAGGTAGCTGGAAAATTTGGAAAGTTAGGAACTTGGGAGAATAGAAATCGATGAACCTAGAAACCTAGAAATTCAGAAATCAGAGAATCTCAGAATATCAGAATCCAGGAATCCGGGATTCTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTATATTGGTTCCTGTGAGAGATGCCTAAAGGAGGCCAGACACCAAAAAAGTTTTCCTGATATTTT</canonical>
            <polymorphic>TTCGAAATGCCTTCCATTAGTTTATCGGTGAATTTCAGCACTTCACCTTGGTGTTTCTTTCCAGCATAGTGGAGGCAGAGCTCAATGAGCATGTAGTTTAATTCAATGTACCGTGGGATTTAGGTCAATTAGGAGGTCGACAATTTTGTTGAAATATTCATCGTGGTGACAGTCGAGGTAGCTGGAAAATTTGGAAAGTTAGGAACTTGGGAGAATAGAAATCGATGAACCTAGAAACCTAGAAATTCAGAAATCAGAGAATCTCAGAATATCAGAATCCAGGAATCCGGGATTCTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATYCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTATATTGGTTCCTGTGAGAGATGCCTAAAGGAGGCCAGACACCAAAAAAGTTTTCCTGATATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>299 259 93 56 56 40 32 24 24 16 16 13 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>299 259 93 80 56 40 32 24 16 16 13 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>299 259 93 56 56 40 32 24 24 16 16 13 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>299 259 93 80 56 40 32 24 16 16 13 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGGAATCGAGGAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAGTTGGTTTAGTGAGTTTTTATATT</pcr_primer_p2>
		<pcr_amplicon_size>362</pcr_amplicon_size>
		<canonical_amplicon>CTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTG</canonical_amplicon>
		<polymorphic_amplicon>CTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATYCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26673</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>190845</contig_pos>
        <strand></strand>
        <context>tatcagaayy[C/T]cagaatttca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATC</left_flank>
        <right_flank>CAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGAAATGCCTTCCATTAGTTTATCGGTGAATTTCAGCACTTCACCTTGGTGTTTCTTTCCAGCATAGTGGAGGCAGAGCTCAATGAGCATGTAGTTTAATTCAATGTACCGTGGGATTTAGGTCAATTAGGAGGTCGACAATTTTGTTGAAATATTCATCGTGGTGACAGTCGAGGTAGCTGGAAAATTTGGAAAGTTAGGAACTTGGGAGAATAGAAATCGATGAACCTAGAAACCTAGAAATTCAGAAATCAGAGAATCTCAGAATATCAGAATCCAGGAATCCGGGATTCTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTATATTGGTTCCTGTGAGAGATGCCTAAAGGAGGCCAGACACCAAAAAAGTTTTCCTGATATTTTG</canonical>
            <polymorphic>TCGAAATGCCTTCCATTAGTTTATCGGTGAATTTCAGCACTTCACCTTGGTGTTTCTTTCCAGCATAGTGGAGGCAGAGCTCAATGAGCATGTAGTTTAATTCAATGTACCGTGGGATTTAGGTCAATTAGGAGGTCGACAATTTTGTTGAAATATTCATCGTGGTGACAGTCGAGGTAGCTGGAAAATTTGGAAAGTTAGGAACTTGGGAGAATAGAAATCGATGAACCTAGAAACCTAGAAATTCAGAAATCAGAGAATCTCAGAATATCAGAATCCAGGAATCCGGGATTCTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCYCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTATATTGGTTCCTGTGAGAGATGCCTAAAGGAGGCCAGACACCAAAAAAGTTTTCCTGATATTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGGAATCGAGGAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAGTTGGTTTAGTGAGTTTTTATATT</pcr_primer_p2>
		<pcr_amplicon_size>362</pcr_amplicon_size>
		<canonical_amplicon>CTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTG</canonical_amplicon>
		<polymorphic_amplicon>CTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCYCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26674</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>190893</contig_pos>
        <strand></strand>
        <context>tatcagaatc[C/T]tagaatctca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATC</left_flank>
        <right_flank>TAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTGTTTCTTTCCAGCATAGTGGAGGCAGAGCTCAATGAGCATGTAGTTTAATTCAATGTACCGTGGGATTTAGGTCAATTAGGAGGTCGACAATTTTGTTGAAATATTCATCGTGGTGACAGTCGAGGTAGCTGGAAAATTTGGAAAGTTAGGAACTTGGGAGAATAGAAATCGATGAACCTAGAAACCTAGAAATTCAGAAATCAGAGAATCTCAGAATATCAGAATCCAGGAATCCGGGATTCTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTATATTGGTTCCTGTGAGAGATGCCTAAAGGAGGCCAGACACCAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGG</canonical>
            <polymorphic>GGTGTTTCTTTCCAGCATAGTGGAGGCAGAGCTCAATGAGCATGTAGTTTAATTCAATGTACCGTGGGATTTAGGTCAATTAGGAGGTCGACAATTTTGTTGAAATATTCATCGTGGTGACAGTCGAGGTAGCTGGAAAATTTGGAAAGTTAGGAACTTGGGAGAATAGAAATCGATGAACCTAGAAACCTAGAAATTCAGAAATCAGAGAATCTCAGAATATCAGAATCCAGGAATCCGGGATTCTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCYTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTATATTGGTTCCTGTGAGAGATGCCTAAAGGAGGCCAGACACCAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 254 182 56 8</canonical_bands>
                <polymorphic_bands>754 182 56 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGGAATCGAGGAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAGTTGGTTTAGTGAGTTTTTATATT</pcr_primer_p2>
		<pcr_amplicon_size>362</pcr_amplicon_size>
		<canonical_amplicon>CTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTG</canonical_amplicon>
		<polymorphic_amplicon>CTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCYTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26675</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>190940</contig_pos>
        <strand></strand>
        <context>atctcaaaat[C/A]tcrgcatttc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAAT</left_flank>
        <right_flank>TCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAATTCAATGTACCGTGGGATTTAGGTCAATTAGGAGGTCGACAATTTTGTTGAAATATTCATCGTGGTGACAGTCGAGGTAGCTGGAAAATTTGGAAAGTTAGGAACTTGGGAGAATAGAAATCGATGAACCTAGAAACCTAGAAATTCAGAAATCAGAGAATCTCAGAATATCAGAATCCAGGAATCCGGGATTCTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTATATTGGTTCCTGTGAGAGATGCCTAAAGGAGGCCAGACACCAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGAGCCGCTACCGGCTGAGCTACGAGGGCGCGAAGGCGCCTGA</canonical>
            <polymorphic>TTTAATTCAATGTACCGTGGGATTTAGGTCAATTAGGAGGTCGACAATTTTGTTGAAATATTCATCGTGGTGACAGTCGAGGTAGCTGGAAAATTTGGAAAGTTAGGAACTTGGGAGAATAGAAATCGATGAACCTAGAAACCTAGAAATTCAGAAATCAGAGAATCTCAGAATATCAGAATCCAGGAATCCGGGATTCTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATMTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTATATTGGTTCCTGTGAGAGATGCCTAAAGGAGGCCAGACACCAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGAGCCGCTACCGGCTGAGCTACGAGGGCGCGAAGGCGCCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>431 167 80 77 32 32 32 32 28 25 16 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>431 167 80 77 48 32 32 32 28 25 8 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGGAATCGAGGAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAGTTGGTTTAGTGAGTTTTTATATT</pcr_primer_p2>
		<pcr_amplicon_size>362</pcr_amplicon_size>
		<canonical_amplicon>CTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTG</canonical_amplicon>
		<polymorphic_amplicon>CTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATMTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26676</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>190943</contig_pos>
        <strand></strand>
        <context>tcaaaatmtc[A/G]gcatttcagr</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTC</left_flank>
        <right_flank>GCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTCAATGTACCGTGGGATTTAGGTCAATTAGGAGGTCGACAATTTTGTTGAAATATTCATCGTGGTGACAGTCGAGGTAGCTGGAAAATTTGGAAAGTTAGGAACTTGGGAGAATAGAAATCGATGAACCTAGAAACCTAGAAATTCAGAAATCAGAGAATCTCAGAATATCAGAATCCAGGAATCCGGGATTCTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTATATTGGTTCCTGTGAGAGATGCCTAAAGGAGGCCAGACACCAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGAGCCGCTACCGGCTGAGCTACGAGGGCGCGAAGGCGCCTGACGA</canonical>
            <polymorphic>AATTCAATGTACCGTGGGATTTAGGTCAATTAGGAGGTCGACAATTTTGTTGAAATATTCATCGTGGTGACAGTCGAGGTAGCTGGAAAATTTGGAAAGTTAGGAACTTGGGAGAATAGAAATCGATGAACCTAGAAACCTAGAAATTCAGAAATCAGAGAATCTCAGAATATCAGAATCCAGGAATCCGGGATTCTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCRGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTATATTGGTTCCTGTGAGAGATGCCTAAAGGAGGCCAGACACCAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGAGCCGCTACCGGCTGAGCTACGAGGGCGCGAAGGCGCCTGACGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>431 164 80 77 32 32 32 32 31 25 16 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>431 164 80 77 48 32 32 32 31 25 8 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGGAATCGAGGAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAGTTGGTTTAGTGAGTTTTTATATT</pcr_primer_p2>
		<pcr_amplicon_size>362</pcr_amplicon_size>
		<canonical_amplicon>CTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTG</canonical_amplicon>
		<polymorphic_amplicon>CTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCRGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26677</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>190953</contig_pos>
        <strand>+</strand>
        <context>rgcatttcag[A/G]atctcagaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAG</left_flank>
        <right_flank>ATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCGTGGGATTTAGGTCAATTAGGAGGTCGACAATTTTGTTGAAATATTCATCGTGGTGACAGTCGAGGTAGCTGGAAAATTTGGAAAGTTAGGAACTTGGGAGAATAGAAATCGATGAACCTAGAAACCTAGAAATTCAGAAATCAGAGAATCTCAGAATATCAGAATCCAGGAATCCGGGATTCTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTATATTGGTTCCTGTGAGAGATGCCTAAAGGAGGCCAGACACCAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGAGCCGCTACCGGCTGAGCTACGAGGGCGCGAAGGCGCCTGACGACCGATGGTCT</canonical>
            <polymorphic>ACCGTGGGATTTAGGTCAATTAGGAGGTCGACAATTTTGTTGAAATATTCATCGTGGTGACAGTCGAGGTAGCTGGAAAATTTGGAAAGTTAGGAACTTGGGAGAATAGAAATCGATGAACCTAGAAACCTAGAAATTCAGAAATCAGAGAATCTCAGAATATCAGAATCCAGGAATCCGGGATTCTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGRATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTATATTGGTTCCTGTGAGAGATGCCTAAAGGAGGCCAGACACCAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGAGCCGCTACCGGCTGAGCTACGAGGGCGCGAAGGCGCCTGACGACCGATGGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>299 202 150 56 56 40 32 24 24 16 16 13 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>355 202 150 56 40 32 24 24 16 16 13 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>271 140 113 53 45 45 40 32 32 24 16 16 16 16 16 16 16 12 10 8 8 8 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>271 140 113 53 48 45 45 32 32 24 16 16 16 16 16 16 16 12 10 8 8 8 8 8 8 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>299 202 150 56 56 40 32 24 24 16 16 13 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>355 202 150 56 40 32 24 24 16 16 13 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGGAATCGAGGAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCATGGTGTACCAATTATAGCA</pcr_primer_p2>
		<pcr_amplicon_size>389</pcr_amplicon_size>
		<canonical_amplicon>CTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTCCTTGCTATAATTGGTACACCATGA</canonical_amplicon>
		<polymorphic_amplicon>CTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGRATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTCCTTGCTATAATTGGTACACCATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26678</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>191001</contig_pos>
        <strand></strand>
        <context>AAACCAACTG[G/A]TCCTTGCTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTG</left_flank>
        <right_flank>TCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATCGTGGTGACAGTCGAGGTAGCTGGAAAATTTGGAAAGTTAGGAACTTGGGAGAATAGAAATCGATGAACCTAGAAACCTAGAAATTCAGAAATCAGAGAATCTCAGAATATCAGAATCCAGGAATCCGGGATTCTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTATATTGGTTCCTGTGAGAGATGCCTAAAGGAGGCCAGACACCAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGAGCCGCTACCGGCTGAGCTACGAGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGACGTGATTTCGTCCCCCGAACTGTCCCCCGAAATTTT</canonical>
            <polymorphic>TCATCGTGGTGACAGTCGAGGTAGCTGGAAAATTTGGAAAGTTAGGAACTTGGGAGAATAGAAATCGATGAACCTAGAAACCTAGAAATTCAGAAATCAGAGAATCTCAGAATATCAGAATCCAGGAATCCGGGATTCTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGRTCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTATATTGGTTCCTGTGAGAGATGCCTAAAGGAGGCCAGACACCAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGAGCCGCTACCGGCTGAGCTACGAGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGACGTGATTTCGTCCCCCGAACTGTCCCCCGAAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>499 357 144</canonical_bands>
                <polymorphic_bands>643 357</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGGAATCGAGGAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GGATTTGAAGGAATTTGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>417</pcr_amplicon_size>
		<canonical_amplicon>CTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAAATCC</canonical_amplicon>
		<polymorphic_amplicon>CTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGRTCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26679</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>191103</contig_pos>
        <strand>+</strand>
        <context>CAAAATTATT[C/T]YTCCGCCGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATT</left_flank>
        <right_flank>TTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAG</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCTCAGAATATCAGAATCCAGGAATCCGGGATTCTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTATATTGGTTCCTGTGAGAGATGCCTAAAGGAGGCCAGACACCAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGAGCCGCTACCGGCTGAGCTACGAGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGACGTGATTTCGTCCCCCGAACTGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAACTGATAAAATGTTTGTCATAAGATTTGCAACATTTTAACAGTTTACAGATTTTTATTATCTCTTGCAGTAACCAAGATAATC</canonical>
            <polymorphic>AATCTCAGAATATCAGAATCCAGGAATCCGGGATTCTAGGAATCGAGGAATCTTTTTTCAGAATCTCAAAATTTCGGAATCTTAGAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTYTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTATATTGGTTCCTGTGAGAGATGCCTAAAGGAGGCCAGACACCAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGAGCCGCTACCGGCTGAGCTACGAGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGACGTGATTTCGTCCCCCGAACTGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAACTGATAAAATGTTTGTCATAAGATTTGCAACATTTTAACAGTTTACAGATTTTTATTATCTCTTGCAGTAACCAAGATAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCAAATCCAAAAACACATC</pcr_primer_p1>
		<pcr_primer_p2>CACAGGAACCAATATAGTTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTATATTGGTTCCTGTG</canonical_amplicon>
		<polymorphic_amplicon>CTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTYTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTATATTGGTTCCTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26680</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>191187</contig_pos>
        <strand>+</strand>
        <context>GCATCTGAAA[A/G]TGATTTTTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAA</left_flank>
        <right_flank>TGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTATATTGGTTCCTGTGAGAGATGCCTAAAGGAGGCCAGACACCAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGAGCCGCTACCGGCTGAGCTACGAGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGACGTGATTTCGTCCCCCGAACTGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAACTGATAAAATGTTTGTCATAAGATTTGCAACATTTTAACAGTTTACAGATTTTTATTATCTCTTGCAGTAACCAAGATAATCGAGCTCAAAGTAAAGCGTTTATAAATGTCTTGGTCATAAGACGTTGCTCAGCGGCGCGGCACCTTTCTTATGAGCTCAACTCCT</canonical>
            <polymorphic>GAATCTCAGAATCGCAGATATTCAGAACATTAGGATCTTAGAAGCTTAGAATCTCAGAATCTCAGAATCACAGAGTTTTAGAATATGGGTATCTCAGAATCTCAGATTTTCAGATTTTCCAAACTTCAGAACTTCAGAATTTCAAGATATCAGAATCCCAGAATTTCAAGATATCAGAATCTCAGAATTTCAAGATATCAGAATCCTAGAATCTCAGAACCTCAGAACTTTATAATACCATCATCTCAAAATCTCAGCATTTCAGAATCTCAGAATTTTCCAAAATAAATATAAAAACTCACTAAACCAACTGGTCCTTGCTATAATTGGTACACCATGAAATGTCGACTTCAAATTCCTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAARTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTATATTGGTTCCTGTGAGAGATGCCTAAAGGAGGCCAGACACCAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGAGCCGCTACCGGCTGAGCTACGAGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGACGTGATTTCGTCCCCCGAACTGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAACTGATAAAATGTTTGTCATAAGATTTGCAACATTTTAACAGTTTACAGATTTTTATTATCTCTTGCAGTAACCAAGATAATCGAGCTCAAAGTAAAGCGTTTATAAATGTCTTGGTCATAAGACGTTGCTCAGCGGCGCGGCACCTTTCTTATGAGCTCAACTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>231 195 149 106 104 70 41 33 25 23 23</canonical_bands>
                <polymorphic_bands>231 210 195 149 70 41 33 25 23 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCAAATCCAAAAACACATC</pcr_primer_p1>
		<pcr_primer_p2>CACAGGAACCAATATAGTTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAAGTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTATATTGGTTCCTGTG</canonical_amplicon>
		<polymorphic_amplicon>CTTCAAATCCAAAAACACATCCTCTCCGATCATGTAGGCACTCTGTCCAAAATTATTCTTCCGCCGCTCATCTGCAGTCCGAGCCAGCTTATCCAACCGGCCCCATAGGATCCAGGCAATTTTCAGAATTTGCATCTGAAARTGATTTTTAGGGTTTTCTCGATACTAAAGGATGAATATTAAGAACGCCGCGTCGCTACTTGCTGATTCCCGTACTTGCTCTTTGAGCTAAACTATATTGGTTCCTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26681</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>193191</contig_pos>
        <strand></strand>
        <context>tatcttggtt[C/T]atgtaaaaga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCGCAGCACCTGCCATTATACTTTCACTTTGAGTTTAATTATCTTGGTT</left_flank>
        <right_flank>ATGTAAAAGATATCAAAAATGTGTTAACAGATAAAAGAATTTCTATAAAA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAAGAAGTGACGAATTGAAATAGTAAAAGGGAGAGAGACGCAGGTGGTTAGAGAGGAAAATGAGTATCAAAAGTACACCAGGGCGGAGGGGAGATCTGTTGATTTAGTGTGTTCAAGGGGAAATTGGAGGACAAACTAGGTGGTCGGCGGATTACGAAATAGTTTATGAGGTCGTAAGAAATAGGAGATTCTGGTTTGGAAGTTAGGGACGTTCTGGCTTGGAAAATTTACATTGGTTCAAATATCGCACCCCATATTTGTACTTTGAGCTCAATTATCTCTATTCCCATAAGAGCTATCAAATATGTGTCAACAAAAAATGTTTTGTTACAAAATTTTAAACATTTTACCAGTTGACATATTTCAGATATCTCATATAGGAACCAAGATAATCGAGCTTAAAGTAGAGCATTTATGCACGCCTCGGCCGTCAATCGTTGTTTTGCTGCGCAGCACCTGCCATTATACTTTCACTTTGAGTTTAATTATCTTGGTTCATGTAAAAGATATCAAAAATGTGTTAACAGATAAAAGAATTTCTATAAAATTTTCAATATTTTATTAGTTTGCGAAGTTTAGATATCTATGGCAGAAAGGAAAATAATCGAGTTTAAAAGTAGAGCCTTTATGAACGCATCGGTCAAGCGTTGTAACTGACATTATACTCGCTCTTTGAGTCTAATTATCTTGGTTCCTGTGAGTAATATCAAAAATTTTTAAACTAATAAAATGTTTTTCATAAAATCCTAAACATTTTATTAGTTTACATATATTTTCGATATGCGTAGCTCGGCGGGGGGAGCGGGGAGAGTCATTTAAGCTCAATTCCTCAAAATCTTCATTTTAACACAATAATTTAACTAATACTTTCTCATGTCCCTCCTCCAGCGTTCATTGAAGTGAAAAATGCATATTGTGTGGGTCTGAGGAAATCTGAATTATAAAATTTCAGAAATCAAAAATTCAGTGTATTGGACAGGTGGATCTTTATTGCATT</canonical>
            <polymorphic>GAAAAAGAAGTGACGAATTGAAATAGTAAAAGGGAGAGAGACGCAGGTGGTTAGAGAGGAAAATGAGTATCAAAAGTACACCAGGGCGGAGGGGAGATCTGTTGATTTAGTGTGTTCAAGGGGAAATTGGAGGACAAACTAGGTGGTCGGCGGATTACGAAATAGTTTATGAGGTCGTAAGAAATAGGAGATTCTGGTTTGGAAGTTAGGGACGTTCTGGCTTGGAAAATTTACATTGGTTCAAATATCGCACCCCATATTTGTACTTTGAGCTCAATTATCTCTATTCCCATAAGAGCTATCAAATATGTGTCAACAAAAAATGTTTTGTTACAAAATTTTAAACATTTTACCAGTTGACATATTTCAGATATCTCATATAGGAACCAAGATAATCGAGCTTAAAGTAGAGCATTTATGCACGCCTCGGCCGTCAATCGTTGTTTTGCTGCGCAGCACCTGCCATTATACTTTCACTTTGAGTTTAATTATCTTGGTTYATGTAAAAGATATCAAAAATGTGTTAACAGATAAAAGAATTTCTATAAAATTTTCAATATTTTATTAGTTTGCGAAGTTTAGATATCTATGGCAGAAAGGAAAATAATCGAGTTTAAAAGTAGAGCCTTTATGAACGCATCGGTCAAGCGTTGTAACTGACATTATACTCGCTCTTTGAGTCTAATTATCTTGGTTCCTGTGAGTAATATCAAAAATTTTTAAACTAATAAAATGTTTTTCATAAAATCCTAAACATTTTATTAGTTTACATATATTTTCGATATGCGTAGCTCGGCGGGGGGAGCGGGGAGAGTCATTTAAGCTCAATTCCTCAAAATCTTCATTTTAACACAATAATTTAACTAATACTTTCTCATGTCCCTCCTCCAGCGTTCATTGAAGTGAAAAATGCATATTGTGTGGGTCTGAGGAAATCTGAATTATAAAATTTCAGAAATCAAAAATTCAGTGTATTGGACAGGTGGATCTTTATTGCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 376 124</canonical_bands>
                <polymorphic_bands>876 124</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTACATTGGTTCAAATATCG</pcr_primer_p1>
		<pcr_primer_p2>TCATAAAGGCTCTACTTTTAAACTC</pcr_primer_p2>
		<pcr_amplicon_size>407</pcr_amplicon_size>
		<canonical_amplicon>AATTTACATTGGTTCAAATATCGCACCCCATATTTGTACTTTGAGCTCAATTATCTCTATTCCCATAAGAGCTATCAAATATGTGTCAACAAAAAATGTTTTGTTACAAAATTTTAAACATTTTACCAGTTGACATATTTCAGATATCTCATATAGGAACCAAGATAATCGAGCTTAAAGTAGAGCATTTATGCACGCCTCGGCCGTCAATCGTTGTTTTGCTGCGCAGCACCTGCCATTATACTTTCACTTTGAGTTTAATTATCTTGGTTCATGTAAAAGATATCAAAAATGTGTTAACAGATAAAAGAATTTCTATAAAATTTTCAATATTTTATTAGTTTGCGAAGTTTAGATATCTATGGCAGAAAGGAAAATAATCGAGTTTAAAAGTAGAGCCTTTATGA</canonical_amplicon>
		<polymorphic_amplicon>AATTTACATTGGTTCAAATATCGCACCCCATATTTGTACTTTGAGCTCAATTATCTCTATTCCCATAAGAGCTATCAAATATGTGTCAACAAAAAATGTTTTGTTACAAAATTTTAAACATTTTACCAGTTGACATATTTCAGATATCTCATATAGGAACCAAGATAATCGAGCTTAAAGTAGAGCATTTATGCACGCCTCGGCCGTCAATCGTTGTTTTGCTGCGCAGCACCTGCCATTATACTTTCACTTTGAGTTTAATTATCTTGGTTYATGTAAAAGATATCAAAAATGTGTTAACAGATAAAAGAATTTCTATAAAATTTTCAATATTTTATTAGTTTGCGAAGTTTAGATATCTATGGCAGAAAGGAAAATAATCGAGTTTAAAAGTAGAGCCTTTATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26682</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>193228</contig_pos>
        <strand></strand>
        <context>acagataaaa[G/T]aatttctata</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTATCTTGGTTCATGTAAAAGATATCAAAAATGTGTTAACAGATAAAA</left_flank>
        <right_flank>AATTTCTATAAAATTTTCAATATTTTATTAGTTTGCGAAGTTTAGATATC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGACGCAGGTGGTTAGAGAGGAAAATGAGTATCAAAAGTACACCAGGGCGGAGGGGAGATCTGTTGATTTAGTGTGTTCAAGGGGAAATTGGAGGACAAACTAGGTGGTCGGCGGATTACGAAATAGTTTATGAGGTCGTAAGAAATAGGAGATTCTGGTTTGGAAGTTAGGGACGTTCTGGCTTGGAAAATTTACATTGGTTCAAATATCGCACCCCATATTTGTACTTTGAGCTCAATTATCTCTATTCCCATAAGAGCTATCAAATATGTGTCAACAAAAAATGTTTTGTTACAAAATTTTAAACATTTTACCAGTTGACATATTTCAGATATCTCATATAGGAACCAAGATAATCGAGCTTAAAGTAGAGCATTTATGCACGCCTCGGCCGTCAATCGTTGTTTTGCTGCGCAGCACCTGCCATTATACTTTCACTTTGAGTTTAATTATCTTGGTTCATGTAAAAGATATCAAAAATGTGTTAACAGATAAAAGAATTTCTATAAAATTTTCAATATTTTATTAGTTTGCGAAGTTTAGATATCTATGGCAGAAAGGAAAATAATCGAGTTTAAAAGTAGAGCCTTTATGAACGCATCGGTCAAGCGTTGTAACTGACATTATACTCGCTCTTTGAGTCTAATTATCTTGGTTCCTGTGAGTAATATCAAAAATTTTTAAACTAATAAAATGTTTTTCATAAAATCCTAAACATTTTATTAGTTTACATATATTTTCGATATGCGTAGCTCGGCGGGGGGAGCGGGGAGAGTCATTTAAGCTCAATTCCTCAAAATCTTCATTTTAACACAATAATTTAACTAATACTTTCTCATGTCCCTCCTCCAGCGTTCATTGAAGTGAAAAATGCATATTGTGTGGGTCTGAGGAAATCTGAATTATAAAATTTCAGAAATCAAAAATTCAGTGTATTGGACAGGTGGATCTTTATTGCATTACACATGTACATGAGATTCAAATCAGATTCTCTAAAA</canonical>
            <polymorphic>GAGACGCAGGTGGTTAGAGAGGAAAATGAGTATCAAAAGTACACCAGGGCGGAGGGGAGATCTGTTGATTTAGTGTGTTCAAGGGGAAATTGGAGGACAAACTAGGTGGTCGGCGGATTACGAAATAGTTTATGAGGTCGTAAGAAATAGGAGATTCTGGTTTGGAAGTTAGGGACGTTCTGGCTTGGAAAATTTACATTGGTTCAAATATCGCACCCCATATTTGTACTTTGAGCTCAATTATCTCTATTCCCATAAGAGCTATCAAATATGTGTCAACAAAAAATGTTTTGTTACAAAATTTTAAACATTTTACCAGTTGACATATTTCAGATATCTCATATAGGAACCAAGATAATCGAGCTTAAAGTAGAGCATTTATGCACGCCTCGGCCGTCAATCGTTGTTTTGCTGCGCAGCACCTGCCATTATACTTTCACTTTGAGTTTAATTATCTTGGTTCATGTAAAAGATATCAAAAATGTGTTAACAGATAAAAKAATTTCTATAAAATTTTCAATATTTTATTAGTTTGCGAAGTTTAGATATCTATGGCAGAAAGGAAAATAATCGAGTTTAAAAGTAGAGCCTTTATGAACGCATCGGTCAAGCGTTGTAACTGACATTATACTCGCTCTTTGAGTCTAATTATCTTGGTTCCTGTGAGTAATATCAAAAATTTTTAAACTAATAAAATGTTTTTCATAAAATCCTAAACATTTTATTAGTTTACATATATTTTCGATATGCGTAGCTCGGCGGGGGGAGCGGGGAGAGTCATTTAAGCTCAATTCCTCAAAATCTTCATTTTAACACAATAATTTAACTAATACTTTCTCATGTCCCTCCTCCAGCGTTCATTGAAGTGAAAAATGCATATTGTGTGGGTCTGAGGAAATCTGAATTATAAAATTTCAGAAATCAAAAATTCAGTGTATTGGACAGGTGGATCTTTATTGCATTACACATGTACATGAGATTCAAATCAGATTCTCTAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>233 201 190 166 109 74 16 11</canonical_bands>
                <polymorphic_bands>233 212 190 166 109 74 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTACATTGGTTCAAATATCG</pcr_primer_p1>
		<pcr_primer_p2>TCATAAAGGCTCTACTTTTAAACTC</pcr_primer_p2>
		<pcr_amplicon_size>407</pcr_amplicon_size>
		<canonical_amplicon>AATTTACATTGGTTCAAATATCGCACCCCATATTTGTACTTTGAGCTCAATTATCTCTATTCCCATAAGAGCTATCAAATATGTGTCAACAAAAAATGTTTTGTTACAAAATTTTAAACATTTTACCAGTTGACATATTTCAGATATCTCATATAGGAACCAAGATAATCGAGCTTAAAGTAGAGCATTTATGCACGCCTCGGCCGTCAATCGTTGTTTTGCTGCGCAGCACCTGCCATTATACTTTCACTTTGAGTTTAATTATCTTGGTTCATGTAAAAGATATCAAAAATGTGTTAACAGATAAAAGAATTTCTATAAAATTTTCAATATTTTATTAGTTTGCGAAGTTTAGATATCTATGGCAGAAAGGAAAATAATCGAGTTTAAAAGTAGAGCCTTTATGA</canonical_amplicon>
		<polymorphic_amplicon>AATTTACATTGGTTCAAATATCGCACCCCATATTTGTACTTTGAGCTCAATTATCTCTATTCCCATAAGAGCTATCAAATATGTGTCAACAAAAAATGTTTTGTTACAAAATTTTAAACATTTTACCAGTTGACATATTTCAGATATCTCATATAGGAACCAAGATAATCGAGCTTAAAGTAGAGCATTTATGCACGCCTCGGCCGTCAATCGTTGTTTTGCTGCGCAGCACCTGCCATTATACTTTCACTTTGAGTTTAATTATCTTGGTTCATGTAAAAGATATCAAAAATGTGTTAACAGATAAAAKAATTTCTATAAAATTTTCAATATTTTATTAGTTTGCGAAGTTTAGATATCTATGGCAGAAAGGAAAATAATCGAGTTTAAAAGTAGAGCCTTTATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26683</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>193247</contig_pos>
        <strand></strand>
        <context>taaaattttc[A/G]atattttatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGATATCAAAAATGTGTTAACAGATAAAAGAATTTCTATAAAATTTTC</left_flank>
        <right_flank>ATATTTTATTAGTTTGCGAAGTTTAGATATCTATGGCAGAAAGGAAAATA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAAAATGAGTATCAAAAGTACACCAGGGCGGAGGGGAGATCTGTTGATTTAGTGTGTTCAAGGGGAAATTGGAGGACAAACTAGGTGGTCGGCGGATTACGAAATAGTTTATGAGGTCGTAAGAAATAGGAGATTCTGGTTTGGAAGTTAGGGACGTTCTGGCTTGGAAAATTTACATTGGTTCAAATATCGCACCCCATATTTGTACTTTGAGCTCAATTATCTCTATTCCCATAAGAGCTATCAAATATGTGTCAACAAAAAATGTTTTGTTACAAAATTTTAAACATTTTACCAGTTGACATATTTCAGATATCTCATATAGGAACCAAGATAATCGAGCTTAAAGTAGAGCATTTATGCACGCCTCGGCCGTCAATCGTTGTTTTGCTGCGCAGCACCTGCCATTATACTTTCACTTTGAGTTTAATTATCTTGGTTCATGTAAAAGATATCAAAAATGTGTTAACAGATAAAAGAATTTCTATAAAATTTTCAATATTTTATTAGTTTGCGAAGTTTAGATATCTATGGCAGAAAGGAAAATAATCGAGTTTAAAAGTAGAGCCTTTATGAACGCATCGGTCAAGCGTTGTAACTGACATTATACTCGCTCTTTGAGTCTAATTATCTTGGTTCCTGTGAGTAATATCAAAAATTTTTAAACTAATAAAATGTTTTTCATAAAATCCTAAACATTTTATTAGTTTACATATATTTTCGATATGCGTAGCTCGGCGGGGGGAGCGGGGAGAGTCATTTAAGCTCAATTCCTCAAAATCTTCATTTTAACACAATAATTTAACTAATACTTTCTCATGTCCCTCCTCCAGCGTTCATTGAAGTGAAAAATGCATATTGTGTGGGTCTGAGGAAATCTGAATTATAAAATTTCAGAAATCAAAAATTCAGTGTATTGGACAGGTGGATCTTTATTGCATTACACATGTACATGAGATTCAAATCAGATTCTCTAAAACAAAATAAATATCATCTTC</canonical>
            <polymorphic>AGGAAAATGAGTATCAAAAGTACACCAGGGCGGAGGGGAGATCTGTTGATTTAGTGTGTTCAAGGGGAAATTGGAGGACAAACTAGGTGGTCGGCGGATTACGAAATAGTTTATGAGGTCGTAAGAAATAGGAGATTCTGGTTTGGAAGTTAGGGACGTTCTGGCTTGGAAAATTTACATTGGTTCAAATATCGCACCCCATATTTGTACTTTGAGCTCAATTATCTCTATTCCCATAAGAGCTATCAAATATGTGTCAACAAAAAATGTTTTGTTACAAAATTTTAAACATTTTACCAGTTGACATATTTCAGATATCTCATATAGGAACCAAGATAATCGAGCTTAAAGTAGAGCATTTATGCACGCCTCGGCCGTCAATCGTTGTTTTGCTGCGCAGCACCTGCCATTATACTTTCACTTTGAGTTTAATTATCTTGGTTCATGTAAAAGATATCAAAAATGTGTTAACAGATAAAAGAATTTCTATAAAATTTTCRATATTTTATTAGTTTGCGAAGTTTAGATATCTATGGCAGAAAGGAAAATAATCGAGTTTAAAAGTAGAGCCTTTATGAACGCATCGGTCAAGCGTTGTAACTGACATTATACTCGCTCTTTGAGTCTAATTATCTTGGTTCCTGTGAGTAATATCAAAAATTTTTAAACTAATAAAATGTTTTTCATAAAATCCTAAACATTTTATTAGTTTACATATATTTTCGATATGCGTAGCTCGGCGGGGGGAGCGGGGAGAGTCATTTAAGCTCAATTCCTCAAAATCTTCATTTTAACACAATAATTTAACTAATACTTTCTCATGTCCCTCCTCCAGCGTTCATTGAAGTGAAAAATGCATATTGTGTGGGTCTGAGGAAATCTGAATTATAAAATTTCAGAAATCAAAAATTCAGTGTATTGGACAGGTGGATCTTTATTGCATTACACATGTACATGAGATTCAAATCAGATTCTCTAAAACAAAATAAATATCATCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTACATTGGTTCAAATATCG</pcr_primer_p1>
		<pcr_primer_p2>TCATAAAGGCTCTACTTTTAAACTC</pcr_primer_p2>
		<pcr_amplicon_size>407</pcr_amplicon_size>
		<canonical_amplicon>AATTTACATTGGTTCAAATATCGCACCCCATATTTGTACTTTGAGCTCAATTATCTCTATTCCCATAAGAGCTATCAAATATGTGTCAACAAAAAATGTTTTGTTACAAAATTTTAAACATTTTACCAGTTGACATATTTCAGATATCTCATATAGGAACCAAGATAATCGAGCTTAAAGTAGAGCATTTATGCACGCCTCGGCCGTCAATCGTTGTTTTGCTGCGCAGCACCTGCCATTATACTTTCACTTTGAGTTTAATTATCTTGGTTCATGTAAAAGATATCAAAAATGTGTTAACAGATAAAAGAATTTCTATAAAATTTTCAATATTTTATTAGTTTGCGAAGTTTAGATATCTATGGCAGAAAGGAAAATAATCGAGTTTAAAAGTAGAGCCTTTATGA</canonical_amplicon>
		<polymorphic_amplicon>AATTTACATTGGTTCAAATATCGCACCCCATATTTGTACTTTGAGCTCAATTATCTCTATTCCCATAAGAGCTATCAAATATGTGTCAACAAAAAATGTTTTGTTACAAAATTTTAAACATTTTACCAGTTGACATATTTCAGATATCTCATATAGGAACCAAGATAATCGAGCTTAAAGTAGAGCATTTATGCACGCCTCGGCCGTCAATCGTTGTTTTGCTGCGCAGCACCTGCCATTATACTTTCACTTTGAGTTTAATTATCTTGGTTCATGTAAAAGATATCAAAAATGTGTTAACAGATAAAAGAATTTCTATAAAATTTTCRATATTTTATTAGTTTGCGAAGTTTAGATATCTATGGCAGAAAGGAAAATAATCGAGTTTAAAAGTAGAGCCTTTATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26684</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>193277</contig_pos>
        <strand></strand>
        <context>agtttagata[T/A]ytatggcaga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGAATTTCTATAAAATTTTCAATATTTTATTAGTTTGCGAAGTTTAGATA</left_flank>
        <right_flank>CTATGGCAGAAAGGAAAATAATCGAGTTTAAAAGTAGAGCCTTTATGAAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGAGGGGAGATCTGTTGATTTAGTGTGTTCAAGGGGAAATTGGAGGACAAACTAGGTGGTCGGCGGATTACGAAATAGTTTATGAGGTCGTAAGAAATAGGAGATTCTGGTTTGGAAGTTAGGGACGTTCTGGCTTGGAAAATTTACATTGGTTCAAATATCGCACCCCATATTTGTACTTTGAGCTCAATTATCTCTATTCCCATAAGAGCTATCAAATATGTGTCAACAAAAAATGTTTTGTTACAAAATTTTAAACATTTTACCAGTTGACATATTTCAGATATCTCATATAGGAACCAAGATAATCGAGCTTAAAGTAGAGCATTTATGCACGCCTCGGCCGTCAATCGTTGTTTTGCTGCGCAGCACCTGCCATTATACTTTCACTTTGAGTTTAATTATCTTGGTTCATGTAAAAGATATCAAAAATGTGTTAACAGATAAAAGAATTTCTATAAAATTTTCAATATTTTATTAGTTTGCGAAGTTTAGATATCTATGGCAGAAAGGAAAATAATCGAGTTTAAAAGTAGAGCCTTTATGAACGCATCGGTCAAGCGTTGTAACTGACATTATACTCGCTCTTTGAGTCTAATTATCTTGGTTCCTGTGAGTAATATCAAAAATTTTTAAACTAATAAAATGTTTTTCATAAAATCCTAAACATTTTATTAGTTTACATATATTTTCGATATGCGTAGCTCGGCGGGGGGAGCGGGGAGAGTCATTTAAGCTCAATTCCTCAAAATCTTCATTTTAACACAATAATTTAACTAATACTTTCTCATGTCCCTCCTCCAGCGTTCATTGAAGTGAAAAATGCATATTGTGTGGGTCTGAGGAAATCTGAATTATAAAATTTCAGAAATCAAAAATTCAGTGTATTGGACAGGTGGATCTTTATTGCATTACACATGTACATGAGATTCAAATCAGATTCTCTAAAACAAAATAAATATCATCTTCAATGCCTTTTGGTCAAAACCGCATCAAACT</canonical>
            <polymorphic>CGGAGGGGAGATCTGTTGATTTAGTGTGTTCAAGGGGAAATTGGAGGACAAACTAGGTGGTCGGCGGATTACGAAATAGTTTATGAGGTCGTAAGAAATAGGAGATTCTGGTTTGGAAGTTAGGGACGTTCTGGCTTGGAAAATTTACATTGGTTCAAATATCGCACCCCATATTTGTACTTTGAGCTCAATTATCTCTATTCCCATAAGAGCTATCAAATATGTGTCAACAAAAAATGTTTTGTTACAAAATTTTAAACATTTTACCAGTTGACATATTTCAGATATCTCATATAGGAACCAAGATAATCGAGCTTAAAGTAGAGCATTTATGCACGCCTCGGCCGTCAATCGTTGTTTTGCTGCGCAGCACCTGCCATTATACTTTCACTTTGAGTTTAATTATCTTGGTTCATGTAAAAGATATCAAAAATGTGTTAACAGATAAAAGAATTTCTATAAAATTTTCAATATTTTATTAGTTTGCGAAGTTTAGATAWCTATGGCAGAAAGGAAAATAATCGAGTTTAAAAGTAGAGCCTTTATGAACGCATCGGTCAAGCGTTGTAACTGACATTATACTCGCTCTTTGAGTCTAATTATCTTGGTTCCTGTGAGTAATATCAAAAATTTTTAAACTAATAAAATGTTTTTCATAAAATCCTAAACATTTTATTAGTTTACATATATTTTCGATATGCGTAGCTCGGCGGGGGGAGCGGGGAGAGTCATTTAAGCTCAATTCCTCAAAATCTTCATTTTAACACAATAATTTAACTAATACTTTCTCATGTCCCTCCTCCAGCGTTCATTGAAGTGAAAAATGCATATTGTGTGGGTCTGAGGAAATCTGAATTATAAAATTTCAGAAATCAAAAATTCAGTGTATTGGACAGGTGGATCTTTATTGCATTACACATGTACATGAGATTCAAATCAGATTCTCTAAAACAAAATAAATATCATCTTCAATGCCTTTTGGTCAAAACCGCATCAAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>502 286 139 73</canonical_bands>
                <polymorphic_bands>575 286 139</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTACATTGGTTCAAATATCG</pcr_primer_p1>
		<pcr_primer_p2>GCGTTCATAAAGGCTCTACTT</pcr_primer_p2>
		<pcr_amplicon_size>411</pcr_amplicon_size>
		<canonical_amplicon>AATTTACATTGGTTCAAATATCGCACCCCATATTTGTACTTTGAGCTCAATTATCTCTATTCCCATAAGAGCTATCAAATATGTGTCAACAAAAAATGTTTTGTTACAAAATTTTAAACATTTTACCAGTTGACATATTTCAGATATCTCATATAGGAACCAAGATAATCGAGCTTAAAGTAGAGCATTTATGCACGCCTCGGCCGTCAATCGTTGTTTTGCTGCGCAGCACCTGCCATTATACTTTCACTTTGAGTTTAATTATCTTGGTTCATGTAAAAGATATCAAAAATGTGTTAACAGATAAAAGAATTTCTATAAAATTTTCAATATTTTATTAGTTTGCGAAGTTTAGATATCTATGGCAGAAAGGAAAATAATCGAGTTTAAAAGTAGAGCCTTTATGAACGC</canonical_amplicon>
		<polymorphic_amplicon>AATTTACATTGGTTCAAATATCGCACCCCATATTTGTACTTTGAGCTCAATTATCTCTATTCCCATAAGAGCTATCAAATATGTGTCAACAAAAAATGTTTTGTTACAAAATTTTAAACATTTTACCAGTTGACATATTTCAGATATCTCATATAGGAACCAAGATAATCGAGCTTAAAGTAGAGCATTTATGCACGCCTCGGCCGTCAATCGTTGTTTTGCTGCGCAGCACCTGCCATTATACTTTCACTTTGAGTTTAATTATCTTGGTTCATGTAAAAGATATCAAAAATGTGTTAACAGATAAAAGAATTTCTATAAAATTTTCAATATTTTATTAGTTTGCGAAGTTTAGATAWCTATGGCAGAAAGGAAAATAATCGAGTTTAAAAGTAGAGCCTTTATGAACGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26685</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>193278</contig_pos>
        <strand></strand>
        <context>gtttagataw[C/T]tatggcagaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAATTTCTATAAAATTTTCAATATTTTATTAGTTTGCGAAGTTTAGATAT</left_flank>
        <right_flank>TATGGCAGAAAGGAAAATAATCGAGTTTAAAAGTAGAGCCTTTATGAACG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGGGGAGATCTGTTGATTTAGTGTGTTCAAGGGGAAATTGGAGGACAAACTAGGTGGTCGGCGGATTACGAAATAGTTTATGAGGTCGTAAGAAATAGGAGATTCTGGTTTGGAAGTTAGGGACGTTCTGGCTTGGAAAATTTACATTGGTTCAAATATCGCACCCCATATTTGTACTTTGAGCTCAATTATCTCTATTCCCATAAGAGCTATCAAATATGTGTCAACAAAAAATGTTTTGTTACAAAATTTTAAACATTTTACCAGTTGACATATTTCAGATATCTCATATAGGAACCAAGATAATCGAGCTTAAAGTAGAGCATTTATGCACGCCTCGGCCGTCAATCGTTGTTTTGCTGCGCAGCACCTGCCATTATACTTTCACTTTGAGTTTAATTATCTTGGTTCATGTAAAAGATATCAAAAATGTGTTAACAGATAAAAGAATTTCTATAAAATTTTCAATATTTTATTAGTTTGCGAAGTTTAGATATCTATGGCAGAAAGGAAAATAATCGAGTTTAAAAGTAGAGCCTTTATGAACGCATCGGTCAAGCGTTGTAACTGACATTATACTCGCTCTTTGAGTCTAATTATCTTGGTTCCTGTGAGTAATATCAAAAATTTTTAAACTAATAAAATGTTTTTCATAAAATCCTAAACATTTTATTAGTTTACATATATTTTCGATATGCGTAGCTCGGCGGGGGGAGCGGGGAGAGTCATTTAAGCTCAATTCCTCAAAATCTTCATTTTAACACAATAATTTAACTAATACTTTCTCATGTCCCTCCTCCAGCGTTCATTGAAGTGAAAAATGCATATTGTGTGGGTCTGAGGAAATCTGAATTATAAAATTTCAGAAATCAAAAATTCAGTGTATTGGACAGGTGGATCTTTATTGCATTACACATGTACATGAGATTCAAATCAGATTCTCTAAAACAAAATAAATATCATCTTCAATGCCTTTTGGTCAAAACCGCATCAAACTC</canonical>
            <polymorphic>GGAGGGGAGATCTGTTGATTTAGTGTGTTCAAGGGGAAATTGGAGGACAAACTAGGTGGTCGGCGGATTACGAAATAGTTTATGAGGTCGTAAGAAATAGGAGATTCTGGTTTGGAAGTTAGGGACGTTCTGGCTTGGAAAATTTACATTGGTTCAAATATCGCACCCCATATTTGTACTTTGAGCTCAATTATCTCTATTCCCATAAGAGCTATCAAATATGTGTCAACAAAAAATGTTTTGTTACAAAATTTTAAACATTTTACCAGTTGACATATTTCAGATATCTCATATAGGAACCAAGATAATCGAGCTTAAAGTAGAGCATTTATGCACGCCTCGGCCGTCAATCGTTGTTTTGCTGCGCAGCACCTGCCATTATACTTTCACTTTGAGTTTAATTATCTTGGTTCATGTAAAAGATATCAAAAATGTGTTAACAGATAAAAGAATTTCTATAAAATTTTCAATATTTTATTAGTTTGCGAAGTTTAGATATYTATGGCAGAAAGGAAAATAATCGAGTTTAAAAGTAGAGCCTTTATGAACGCATCGGTCAAGCGTTGTAACTGACATTATACTCGCTCTTTGAGTCTAATTATCTTGGTTCCTGTGAGTAATATCAAAAATTTTTAAACTAATAAAATGTTTTTCATAAAATCCTAAACATTTTATTAGTTTACATATATTTTCGATATGCGTAGCTCGGCGGGGGGAGCGGGGAGAGTCATTTAAGCTCAATTCCTCAAAATCTTCATTTTAACACAATAATTTAACTAATACTTTCTCATGTCCCTCCTCCAGCGTTCATTGAAGTGAAAAATGCATATTGTGTGGGTCTGAGGAAATCTGAATTATAAAATTTCAGAAATCAAAAATTCAGTGTATTGGACAGGTGGATCTTTATTGCATTACACATGTACATGAGATTCAAATCAGATTCTCTAAAACAAAATAAATATCATCTTCAATGCCTTTTGGTCAAAACCGCATCAAACTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>503 285 139 73</canonical_bands>
                <polymorphic_bands>576 285 139</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTACATTGGTTCAAATATCG</pcr_primer_p1>
		<pcr_primer_p2>TGCGTTCATAAAGGCTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>412</pcr_amplicon_size>
		<canonical_amplicon>AATTTACATTGGTTCAAATATCGCACCCCATATTTGTACTTTGAGCTCAATTATCTCTATTCCCATAAGAGCTATCAAATATGTGTCAACAAAAAATGTTTTGTTACAAAATTTTAAACATTTTACCAGTTGACATATTTCAGATATCTCATATAGGAACCAAGATAATCGAGCTTAAAGTAGAGCATTTATGCACGCCTCGGCCGTCAATCGTTGTTTTGCTGCGCAGCACCTGCCATTATACTTTCACTTTGAGTTTAATTATCTTGGTTCATGTAAAAGATATCAAAAATGTGTTAACAGATAAAAGAATTTCTATAAAATTTTCAATATTTTATTAGTTTGCGAAGTTTAGATATCTATGGCAGAAAGGAAAATAATCGAGTTTAAAAGTAGAGCCTTTATGAACGCA</canonical_amplicon>
		<polymorphic_amplicon>AATTTACATTGGTTCAAATATCGCACCCCATATTTGTACTTTGAGCTCAATTATCTCTATTCCCATAAGAGCTATCAAATATGTGTCAACAAAAAATGTTTTGTTACAAAATTTTAAACATTTTACCAGTTGACATATTTCAGATATCTCATATAGGAACCAAGATAATCGAGCTTAAAGTAGAGCATTTATGCACGCCTCGGCCGTCAATCGTTGTTTTGCTGCGCAGCACCTGCCATTATACTTTCACTTTGAGTTTAATTATCTTGGTTCATGTAAAAGATATCAAAAATGTGTTAACAGATAAAAGAATTTCTATAAAATTTTCAATATTTTATTAGTTTGCGAAGTTTAGATATYTATGGCAGAAAGGAAAATAATCGAGTTTAAAAGTAGAGCCTTTATGAACGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26686</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>193397</contig_pos>
        <strand></strand>
        <context>tcctgtgagt[A/G]atatcaaaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTGACATTATACTCGCTCTTTGAGTCTAATTATCTTGGTTCCTGTGAGT</left_flank>
        <right_flank>ATATCAAAAATTTTTAAACTAATAAAATGTTTTTCATAAAATCCTAAACA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGGACGTTCTGGCTTGGAAAATTTACATTGGTTCAAATATCGCACCCCATATTTGTACTTTGAGCTCAATTATCTCTATTCCCATAAGAGCTATCAAATATGTGTCAACAAAAAATGTTTTGTTACAAAATTTTAAACATTTTACCAGTTGACATATTTCAGATATCTCATATAGGAACCAAGATAATCGAGCTTAAAGTAGAGCATTTATGCACGCCTCGGCCGTCAATCGTTGTTTTGCTGCGCAGCACCTGCCATTATACTTTCACTTTGAGTTTAATTATCTTGGTTCATGTAAAAGATATCAAAAATGTGTTAACAGATAAAAGAATTTCTATAAAATTTTCAATATTTTATTAGTTTGCGAAGTTTAGATATCTATGGCAGAAAGGAAAATAATCGAGTTTAAAAGTAGAGCCTTTATGAACGCATCGGTCAAGCGTTGTAACTGACATTATACTCGCTCTTTGAGTCTAATTATCTTGGTTCCTGTGAGTAATATCAAAAATTTTTAAACTAATAAAATGTTTTTCATAAAATCCTAAACATTTTATTAGTTTACATATATTTTCGATATGCGTAGCTCGGCGGGGGGAGCGGGGAGAGTCATTTAAGCTCAATTCCTCAAAATCTTCATTTTAACACAATAATTTAACTAATACTTTCTCATGTCCCTCCTCCAGCGTTCATTGAAGTGAAAAATGCATATTGTGTGGGTCTGAGGAAATCTGAATTATAAAATTTCAGAAATCAAAAATTCAGTGTATTGGACAGGTGGATCTTTATTGCATTACACATGTACATGAGATTCAAATCAGATTCTCTAAAACAAAATAAATATCATCTTCAATGCCTTTTGGTCAAAACCGCATCAAACTCTCTTGGTGTCACTCTCAAAGCTTGGGTCTTATCAATAGAAGGAGGTCCAGTACTGGATGGCGAGATCTGAAACAATTTTTTTGATAGTTCAATTTTCTTCATTATCGAATTACCTCGTA</canonical>
            <polymorphic>TAGGGACGTTCTGGCTTGGAAAATTTACATTGGTTCAAATATCGCACCCCATATTTGTACTTTGAGCTCAATTATCTCTATTCCCATAAGAGCTATCAAATATGTGTCAACAAAAAATGTTTTGTTACAAAATTTTAAACATTTTACCAGTTGACATATTTCAGATATCTCATATAGGAACCAAGATAATCGAGCTTAAAGTAGAGCATTTATGCACGCCTCGGCCGTCAATCGTTGTTTTGCTGCGCAGCACCTGCCATTATACTTTCACTTTGAGTTTAATTATCTTGGTTCATGTAAAAGATATCAAAAATGTGTTAACAGATAAAAGAATTTCTATAAAATTTTCAATATTTTATTAGTTTGCGAAGTTTAGATATCTATGGCAGAAAGGAAAATAATCGAGTTTAAAAGTAGAGCCTTTATGAACGCATCGGTCAAGCGTTGTAACTGACATTATACTCGCTCTTTGAGTCTAATTATCTTGGTTCCTGTGAGTRATATCAAAAATTTTTAAACTAATAAAATGTTTTTCATAAAATCCTAAACATTTTATTAGTTTACATATATTTTCGATATGCGTAGCTCGGCGGGGGGAGCGGGGAGAGTCATTTAAGCTCAATTCCTCAAAATCTTCATTTTAACACAATAATTTAACTAATACTTTCTCATGTCCCTCCTCCAGCGTTCATTGAAGTGAAAAATGCATATTGTGTGGGTCTGAGGAAATCTGAATTATAAAATTTCAGAAATCAAAAATTCAGTGTATTGGACAGGTGGATCTTTATTGCATTACACATGTACATGAGATTCAAATCAGATTCTCTAAAACAAAATAAATATCATCTTCAATGCCTTTTGGTCAAAACCGCATCAAACTCTCTTGGTGTCACTCTCAAAGCTTGGGTCTTATCAATAGAAGGAGGTCCAGTACTGGATGGCGAGATCTGAAACAATTTTTTTGATAGTTCAATTTTCTTCATTATCGAATTACCTCGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGTTTAAAAGTAGAGCCTTTAT</pcr_primer_p1>
		<pcr_primer_p2>TGTTAAAATGAAGATTTTGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CGAGTTTAAAAGTAGAGCCTTTATGAACGCATCGGTCAAGCGTTGTAACTGACATTATACTCGCTCTTTGAGTCTAATTATCTTGGTTCCTGTGAGTAATATCAAAAATTTTTAAACTAATAAAATGTTTTTCATAAAATCCTAAACATTTTATTAGTTTACATATATTTTCGATATGCGTAGCTCGGCGGGGGGAGCGGGGAGAGTCATTTAAGCTCAATTCCTCAAAATCTTCATTTTAACA</canonical_amplicon>
		<polymorphic_amplicon>CGAGTTTAAAAGTAGAGCCTTTATGAACGCATCGGTCAAGCGTTGTAACTGACATTATACTCGCTCTTTGAGTCTAATTATCTTGGTTCCTGTGAGTRATATCAAAAATTTTTAAACTAATAAAATGTTTTTCATAAAATCCTAAACATTTTATTAGTTTACATATATTTTCGATATGCGTAGCTCGGCGGGGGGAGCGGGGAGAGTCATTTAAGCTCAATTCCTCAAAATCTTCATTTTAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26687</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>225376</contig_pos>
        <strand></strand>
        <context>actaagttaa[G/A]atttaccaat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>NNNNNNNNNNNNNNNNGGGGCCCAAATGGAAAAAATGTGGACTAAGTTAA</left_flank>
        <right_flank>ATTTACCAATTTTTCCAAGTTTTCCGGATGTTTCTTTGAAAATTTCGTAC</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATTCCGAAGAAAAAATTTTCGTCTCTTAAGTAGTTGAACTTTATACAGACTGAGCTACGGGCTCGTGGTGGTCCCGAACGACCGCTAACATGCAATGGGAACTATAGTTTAGATGGGGACTAACATAAGTTACCAAAACAAAAAAGAAAAAAAAATCTTAAGTCAACTCAAACATTTCTGGATGAGAAAAATCTACAGAAAACACATCAAAAAGCTTCGAAATCTGGTTCCTATCCCTCCGTAATCTGACACTCGATTCAATCAACTTATTCACTTTCATAAGTTTTTCCAACCGATTCGAATATCTTGGAATGTTCAGTATATTCGTGTAATGATGATGAAGGTAATCAGCTTGCGTTTGAATAATACGATCAGTAGCTTCTAGAACTTTCCCTTGGTTCCTGACGCCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGCCCAAATGGAAAAAATGTGGACTAAGTTAAGATTTACCAATTTTTCCAAGTTTTCCGGATGTTTCTTTGAAAATTTCGTACTTTGCGCTTGTTTCCACAAAAATTCGTCACTTTGAAAAATTTCAGTTTTGGCCGGTTTTTTGCATGAACAACACTATTTTGGTAATTGAAACTGTGTAATTTGAAATTATTCAGCTAGTTTTAGATTTTTTAAGGCTTAGTAACAAAAAAATAGACAAAAAATGTGAAAAAATGACATAAACTGAAATTTTCAAAAAAATATGAAAAATGTTCAAAGTTCGAAATTGACATGGAAACAGTCACAAAACTTGAAAAAATTGGTAAATTTCAACTCAGACATAATTTTTCTACTTGGGCTATTCTCATGCCCCCCCCCCCTTTTCCCATGGGCCCCCCTTTTCTCATGGGCTCCTTGTCATAAAGAGCCAAAAAGTTTAGGTACCCCTGCAAAAAGTGTCGGCTCAAAAAGTGCTATGATGTTGGAATGGATGCTAAAAGTTAGGTTTTTAA</canonical>
            <polymorphic>CAAATTCCGAAGAAAAAATTTTCGTCTCTTAAGTAGTTGAACTTTATACAGACTGAGCTACGGGCTCGTGGTGGTCCCGAACGACCGCTAACATGCAATGGGAACTATAGTTTAGATGGGGACTAACATAAGTTACCAAAACAAAAAAGAAAAAAAAATCTTAAGTCAACTCAAACATTTCTGGATGAGAAAAATCTACAGAAAACACATCAAAAAGCTTCGAAATCTGGTTCCTATCCCTCCGTAATCTGACACTCGATTCAATCAACTTATTCACTTTCATAAGTTTTTCCAACCGATTCGAATATCTTGGAATGTTCAGTATATTCGTGTAATGATGATGAAGGTAATCAGCTTGCGTTTGAATAATACGATCAGTAGCTTCTAGAACTTTCCCTTGGTTCCTGACGCCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGCCCAAATGGAAAAAATGTGGACTAAGTTAARATTTACCAATTTTTCCAAGTTTTCCGGATGTTTCTTTGAAAATTTCGTACTTTGCGCTTGTTTCCACAAAAATTCGTCACTTTGAAAAATTTCAGTTTTGGCCGGTTTTTTGCATGAACAACACTATTTTGGTAATTGAAACTGTGTAATTTGAAATTATTCAGCTAGTTTTAGATTTTTTAAGGCTTAGTAACAAAAAAATAGACAAAAAATGTGAAAAAATGACATAAACTGAAATTTTCAAAAAAATATGAAAAATGTTCAAAGTTCGAAATTGACATGGAAACAGTCACAAAACTTGAAAAAATTGGTAAATTTCAACTCAGACATAATTTTTCTACTTGGGCTATTCTCATGCCCCCCCCCCCTTTTCCCATGGGCCCCCCTTTTCTCATGGGCTCCTTGTCATAAAGAGCCAAAAAGTTTAGGTACCCCTGCAAAAAGTGTCGGCTCAAAAAGTGCTATGATGTTGGAATGGATGCTAAAAGTTAGGTTTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAGAACTTTCCCTTGGTTC</pcr_primer_p1>
		<pcr_primer_p2>CTTTTTGGCTCTTTATGACAAG</pcr_primer_p2>
		<pcr_amplicon_size>540</pcr_amplicon_size>
		<canonical_amplicon>TCTAGAACTTTCCCTTGGTTCCTGACGCCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGCCCAAATGGAAAAAATGTGGACTAAGTTAAGATTTACCAATTTTTCCAAGTTTTCCGGATGTTTCTTTGAAAATTTCGTACTTTGCGCTTGTTTCCACAAAAATTCGTCACTTTGAAAAATTTCAGTTTTGGCCGGTTTTTTGCATGAACAACACTATTTTGGTAATTGAAACTGTGTAATTTGAAATTATTCAGCTAGTTTTAGATTTTTTAAGGCTTAGTAACAAAAAAATAGACAAAAAATGTGAAAAAATGACATAAACTGAAATTTTCAAAAAAATATGAAAAATGTTCAAAGTTCGAAATTGACATGGAAACAGTCACAAAACTTGAAAAAATTGGTAAATTTCAACTCAGACATAATTTTTCTACTTGGGCTATTCTCATGCCCCCCCCCCCTTTTCCCATGGGCCCCCCTTTTCTCATGGGCTCCTTGTCATAAAGAGCCAAAAAG</canonical_amplicon>
		<polymorphic_amplicon>TCTAGAACTTTCCCTTGGTTCCTGACGCCAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGCCCAAATGGAAAAAATGTGGACTAAGTTAARATTTACCAATTTTTCCAAGTTTTCCGGATGTTTCTTTGAAAATTTCGTACTTTGCGCTTGTTTCCACAAAAATTCGTCACTTTGAAAAATTTCAGTTTTGGCCGGTTTTTTGCATGAACAACACTATTTTGGTAATTGAAACTGTGTAATTTGAAATTATTCAGCTAGTTTTAGATTTTTTAAGGCTTAGTAACAAAAAAATAGACAAAAAATGTGAAAAAATGACATAAACTGAAATTTTCAAAAAAATATGAAAAATGTTCAAAGTTCGAAATTGACATGGAAACAGTCACAAAACTTGAAAAAATTGGTAAATTTCAACTCAGACATAATTTTTCTACTTGGGCTATTCTCATGCCCCCCCCCCCTTTTCCCATGGGCCCCCCTTTTCTCATGGGCTCCTTGTCATAAAGAGCCAAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26688</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>249116</contig_pos>
        <strand>+</strand>
        <context>TATCTAGAAT[A/G]AACTTGGACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGAAAAATGCGGCGCAGGCTCTGCAAGAAGACGTGTTTATATCTAGAAT</left_flank>
        <right_flank>AACTTGGACACAAACCACATCAACTCTGGTTTTTGTGACAAAAAATCGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACACTAGATAAACTCAGAGAACCCAAAAAGTGTTCGAAAAAAAACTACGACGTTTCGAAATAACACACTCTTAAAATTAGTGATTCGGACTAAATTTTGAGACGGACTTCGAACTTCGGAATACGGAGACTGGACAATACAAAGCTTCACATTTAAAAAACATTAACCTCCTCTTTCCTGAACGATTTCTTTCTCGCTTCCTCTAACGTCCAATAAGCTCTTTTCATTTGTTCCAAAAAACTCGTTTCATTGCTCAAACCTAGGACACCCAATCCTGCTCCCCGATTCGAAAGTATTCTCGCCATCACTTCAGAAGACTTCATCCCCACTTTAAGACACCTTTCGTATCGACAAGATGCGCATAGTTTTCTTAGTACTCGAGTGTCTAATCTGCAATTCCCATCGCATCGGATCACTGATGTCATCTTTTTTCCGACGACGATCCGTCGGAAAAATGCGGCGCAGGCTCTGCAAGAAGACGTGTTTATATCTAGAATGAACTTGGACACAAACCACATCAACTCTGGTTTTTGTGACAAAAAATCGTAGTTTGTGTTGGGATTTATGAATAGGAATAAAAACCTACCTACAAGAAATAGCTCCAAAATGACAGGAACCAGCGGATTGTCCACAAACTGTGCAAGTAGGTGAAGTTTTCATGTCTGAAAATGGAGGTTTGTCTGTAAATGAAAAATGGGAGTTGTGGAAAAAAACAAGTGCTATAATTTTAGACATATTCAAAACAAAATTTGTCCGAATTTTTGATAAACAAAACAAAATAGAAATTCTTTAAAAAACTTTGAGTGAATCTCAAAAAAATAGTACACCGCTGAAGAAAAGATGAAAAGATTAACCATCTTGAGAAAGGTCGTCTCCGTGCGGCCAAGAATGTGTGAGAACGGGAAATCTAGATAAAACACCTAGACTTTCTGGACACGAATAGGAATAGAAATAGTGTGATTGGCAGTTGCGCTCTAATGAGAAAAGGCGTGCCAAAG</canonical>
            <polymorphic>ACACACTAGATAAACTCAGAGAACCCAAAAAGTGTTCGAAAAAAAACTACGACGTTTCGAAATAACACACTCTTAAAATTAGTGATTCGGACTAAATTTTGAGACGGACTTCGAACTTCGGAATACGGAGACTGGACAATACAAAGCTTCACATTTAAAAAACATTAACCTCCTCTTTCCTGAACGATTTCTTTCTCGCTTCCTCTAACGTCCAATAAGCTCTTTTCATTTGTTCCAAAAAACTCGTTTCATTGCTCAAACCTAGGACACCCAATCCTGCTCCCCGATTCGAAAGTATTCTCGCCATCACTTCAGAAGACTTCATCCCCACTTTAAGACACCTTTCGTATCGACAAGATGCGCATAGTTTTCTTAGTACTCGAGTGTCTAATCTGCAATTCCCATCGCATCGGATCACTGATGTCATCTTTTTTCCGACGACGATCCGTCGGAAAAATGCGGCGCAGGCTCTGCAAGAAGACGTGTTTATATCTAGAATRAACTTGGACACAAACCACATCAACTCTGGTTTTTGTGACAAAAAATCGTAGTTTGTGTTGGGATTTATGAATAGGAATAAAAACCTACCTACAAGAAATAGCTCCAAAATGACAGGAACCAGCGGATTGTCCACAAACTGTGCAAGTAGGTGAAGTTTTCATGTCTGAAAATGGAGGTTTGTCTGTAAATGAAAAATGGGAGTTGTGGAAAAAAACAAGTGCTATAATTTTAGACATATTCAAAACAAAATTTGTCCGAATTTTTGATAAACAAAACAAAATAGAAATTCTTTAAAAAACTTTGAGTGAATCTCAAAAAAATAGTACACCGCTGAAGAAAAGATGAAAAGATTAACCATCTTGAGAAAGGTCGTCTCCGTGCGGCCAAGAATGTGTGAGAACGGGAAATCTAGATAAAACACCTAGACTTTCTGGACACGAATAGGAATAGAAATAGTGTGATTGGCAGTTGCGCTCTAATGAGAAAAGGCGTGCCAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATGCGCATAGTTTTCTTAGTA</pcr_primer_p1>
		<pcr_primer_p2>GGAGCTATTTCTTGTAGGTAGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGATGCGCATAGTTTTCTTAGTACTCGAGTGTCTAATCTGCAATTCCCATCGCATCGGATCACTGATGTCATCTTTTTTCCGACGACGATCCGTCGGAAAAATGCGGCGCAGGCTCTGCAAGAAGACGTGTTTATATCTAGAATGAACTTGGACACAAACCACATCAACTCTGGTTTTTGTGACAAAAAATCGTAGTTTGTGTTGGGATTTATGAATAGGAATAAAAACCTACCTACAAGAAATAGCTCC</canonical_amplicon>
		<polymorphic_amplicon>AGATGCGCATAGTTTTCTTAGTACTCGAGTGTCTAATCTGCAATTCCCATCGCATCGGATCACTGATGTCATCTTTTTTCCGACGACGATCCGTCGGAAAAATGCGGCGCAGGCTCTGCAAGAAGACGTGTTTATATCTAGAATRAACTTGGACACAAACCACATCAACTCTGGTTTTTGTGACAAAAAATCGTAGTTTGTGTTGGGATTTATGAATAGGAATAAAAACCTACCTACAAGAAATAGCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26689</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>324978</contig_pos>
        <strand>+</strand>
        <context>AATTAGAATT[A/T]CGGAAATAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTACCAAAATTCTGAGTTTCTGAATAAAGAAATTTCAAAAAATTAGAATT</left_flank>
        <right_flank>CGGAAATAGGAAATTCGGAAAATAAGGATTTTGAAAGTTCAAAAATCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAATTCGAAATATATAAAATTTGGATCTTCTGAAATTAGTGACTTCAACAATTCGGAAACTAAAAATTATATTGGGAATTTAAAAGCTTTTAAAATTCACATTTTACTTACAGTTTACTTTTACAATTTCAGAGTTTTCGAATTGCTGAAATTTCGGCTCTGGATTTCCGAGTTCCGACTCTCTTAATCTTTTAACTCCCGAATTTCCGGAAAGCTGAAAATATGAATTTCTGAACACGAAAACTTCAAACAATTGGAATTTCGGAAGGTTGAAAAGTAGCAAACTCGAACTTCTGAATTTGATACATTGAATTTCCAAAAGTCAGAAAAATAACCCTCGAACTTCAAAATGTCTCATTTTTTGGATATCTGGATTTCCTTATTCCTGACTTTCCAAATTCTTAAAAAATTCGAATATCTTAATTTCAGAAACTTTTAAATGCACAACTACCAAAATTCTGAGTTTCTGAATAAAGAAATTTCAAAAAATTAGAATTTCGGAAATAGGAAATTCGGAAAATAAGGATTTTGAAAGTTCAAAAATCAATGAATTCTAGAAATCCGGGAATCCGAAATATAGAAAATTCAGGAAAAAACAAAAAACTCCTGAATGTCTATTCTGAAAAAATCCCCCCCCCCCCCCCCCCAAGTTTAAACTCAATTTCTCAATTTCCGAATATTTCGAATTCTAGCTTTTCAGAACGCGGAAAATCAGAATCATCAAAAACTAGAATTTCAGACACTCAGAATTACAGAAGAAATTTACAAAACTCTGAGTTTCTAAATTTCCTATTTTCCAAGTTCAGATAAAAAAAAATTCCCTCAATAAAAGTTTCGAGGCCTCTTTTTGAAGCCAAGATTACAGATACTGTAACCGAAGACCAGGAGTTTCAGCCCCGAAGGGGCGTAAACCGACTGGTATTATCTTATCAGAAACTGTCACATTCACTCAAAAAGCTACAATCCAACGCTCAGAAGTATGTTATAGATTACTGTTG</canonical>
            <polymorphic>TGAAATTCGAAATATATAAAATTTGGATCTTCTGAAATTAGTGACTTCAACAATTCGGAAACTAAAAATTATATTGGGAATTTAAAAGCTTTTAAAATTCACATTTTACTTACAGTTTACTTTTACAATTTCAGAGTTTTCGAATTGCTGAAATTTCGGCTCTGGATTTCCGAGTTCCGACTCTCTTAATCTTTTAACTCCCGAATTTCCGGAAAGCTGAAAATATGAATTTCTGAACACGAAAACTTCAAACAATTGGAATTTCGGAAGGTTGAAAAGTAGCAAACTCGAACTTCTGAATTTGATACATTGAATTTCCAAAAGTCAGAAAAATAACCCTCGAACTTCAAAATGTCTCATTTTTTGGATATCTGGATTTCCTTATTCCTGACTTTCCAAATTCTTAAAAAATTCGAATATCTTAATTTCAGAAACTTTTAAATGCACAACTACCAAAATTCTGAGTTTCTGAATAAAGAAATTTCAAAAAATTAGAATTWCGGAAATAGGAAATTCGGAAAATAAGGATTTTGAAAGTTCAAAAATCAATGAATTCTAGAAATCCGGGAATCCGAAATATAGAAAATTCAGGAAAAAACAAAAAACTCCTGAATGTCTATTCTGAAAAAATCCCCCCCCCCCCCCCCCCAAGTTTAAACTCAATTTCTCAATTTCCGAATATTTCGAATTCTAGCTTTTCAGAACGCGGAAAATCAGAATCATCAAAAACTAGAATTTCAGACACTCAGAATTACAGAAGAAATTTACAAAACTCTGAGTTTCTAAATTTCCTATTTTCCAAGTTCAGATAAAAAAAAATTCCCTCAATAAAAGTTTCGAGGCCTCTTTTTGAAGCCAAGATTACAGATACTGTAACCGAAGACCAGGAGTTTCAGCCCCGAAGGGGCGTAAACCGACTGGTATTATCTTATCAGAAACTGTCACATTCACTCAAAAAGCTACAATCCAACGCTCAGAAGTATGTTATAGATTACTGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>183 102 86 59 56 52 47 47 40 39 33 32 32 28 24 24 23 17 16 16 16 14 11 3</canonical_bands>
                <polymorphic_bands>183 102 86 59 56 52 47 47 40 39 33 32 32 32 28 24 24 23 17 16 14 11 3</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>127 103 76 56 56 53 50 42 38 33 32 32 32 31 31 30 28 25 24 24 24 15 15 8 8 7</canonical_bands>
                <polymorphic_bands>127 103 76 56 56 53 50 47 42 38 33 32 32 31 31 30 28 25 24 24 24 15 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTTTTAAATGCACAACTACCA</pcr_primer_p1>
		<pcr_primer_p2>ATATTCGGAAATTGAGAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACTTTTAAATGCACAACTACCAAAATTCTGAGTTTCTGAATAAAGAAATTTCAAAAAATTAGAATTTCGGAAATAGGAAATTCGGAAAATAAGGATTTTGAAAGTTCAAAAATCAATGAATTCTAGAAATCCGGGAATCCGAAATATAGAAAATTCAGGAAAAAACAAAAAACTCCTGAATGTCTATTCTGAAAAAATCCCCCCCCCCCCCCCCCCAAGTTTAAACTCAATTTCTCAATTTCCGAATAT</canonical_amplicon>
		<polymorphic_amplicon>AACTTTTAAATGCACAACTACCAAAATTCTGAGTTTCTGAATAAAGAAATTTCAAAAAATTAGAATTWCGGAAATAGGAAATTCGGAAAATAAGGATTTTGAAAGTTCAAAAATCAATGAATTCTAGAAATCCGGGAATCCGAAATATAGAAAATTCAGGAAAAAACAAAAAACTCCTGAATGTCTATTCTGAAAAAATCCCCCCCCCCCCCCCCCCAAGTTTAAACTCAATTTCTCAATTTCCGAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26690</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>334010</contig_pos>
        <strand>+</strand>
        <context>TGGGCTGTCC[A/T]TGACTCAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAACGAACAACATTCAGGTTTTGGAAAAATGATCATCTATGGGCTGTCC</left_flank>
        <right_flank>TGACTCAATTATACAACTTCTTGACGGCAAATCATTGGCTCACTTTTATG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTTGAATTTTTTTACTGCAGATTTTTTTAAGATTTGCTGATTAGTGTCATTAGTAAGTTTCTAAATGTGGGACCTAAATATGAATGGTACGGTGTAGTAAACGGAAGGATGTGTTTTGTCCTAAGCCTTGTCAATTTCCTGTTTTAGTCCCCTAAAGGTACATGGTGACATATTGGGGGTCTCAATTGAGATGTTTTGAATTTACACCCGTTTTGATCTACTTGTAAGTTTATTTTTTTGGTGCTGGGCAGTTATACTGAACTGGGAGGTACTATTGATTTCTGAAGCTCCTGCATTTCGCCTTATCTAACGGCGGGTCTTGATCTAATGGTCGGTCATAAAACAAGGCCGTGGTTCTGGCCTGTTGCCGTAGATCAAAACAGTTTTTTTATATGCTCAGCCAAACAGAAACTAGGGATTCTAGGCCGCCAAATCCTGTCCAGCTAAGAAACGAACAACATTCAGGTTTTGGAAAAATGATCATCTATGGGCTGTCCTTGACTCAATTATACAACTTCTTGACGGCAAATCATTGGCTCACTTTTATGGTCGTCTGGCCTGTTAGCGCTTCGAGCAATGTGAGAGCAGTTTTGATCTTCATTATTGCCCTTGACAGGACTTGTGTGAGTTTTACACACCTAAACTTAGCAATCCATTACTTTTTCAGGCCGCCTACTGTCCTACAATCTTTTCCAAGTACCGTAAACTAATACCGACTGTTCATGTGATTTTCTTTGTTTCATCATTTCTTGTGATTGAAACATTGATAGCTTTTCACATTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGTTTATCAATGGAGCCTGTTATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACACTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGGGATAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACA</canonical>
            <polymorphic>GAGTTGAATTTTTTTACTGCAGATTTTTTTAAGATTTGCTGATTAGTGTCATTAGTAAGTTTCTAAATGTGGGACCTAAATATGAATGGTACGGTGTAGTAAACGGAAGGATGTGTTTTGTCCTAAGCCTTGTCAATTTCCTGTTTTAGTCCCCTAAAGGTACATGGTGACATATTGGGGGTCTCAATTGAGATGTTTTGAATTTACACCCGTTTTGATCTACTTGTAAGTTTATTTTTTTGGTGCTGGGCAGTTATACTGAACTGGGAGGTACTATTGATTTCTGAAGCTCCTGCATTTCGCCTTATCTAACGGCGGGTCTTGATCTAATGGTCGGTCATAAAACAAGGCCGTGGTTCTGGCCTGTTGCCGTAGATCAAAACAGTTTTTTTATATGCTCAGCCAAACAGAAACTAGGGATTCTAGGCCGCCAAATCCTGTCCAGCTAAGAAACGAACAACATTCAGGTTTTGGAAAAATGATCATCTATGGGCTGTCCWTGACTCAATTATACAACTTCTTGACGGCAAATCATTGGCTCACTTTTATGGTCGTCTGGCCTGTTAGCGCTTCGAGCAATGTGAGAGCAGTTTTGATCTTCATTATTGCCCTTGACAGGACTTGTGTGAGTTTTACACACCTAAACTTAGCAATCCATTACTTTTTCAGGCCGCCTACTGTCCTACAATCTTTTCCAAGTACCGTAAACTAATACCGACTGTTCATGTGATTTTCTTTGTTTCATCATTTCTTGTGATTGAAACATTGATAGCTTTTCACATTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGTTTATCAATGGAGCCTGTTATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACACTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGGGATAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTAATGGTCGGTCATAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CCAGACGACCATAAAAGTGA</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>ATCTAATGGTCGGTCATAAAACAAGGCCGTGGTTCTGGCCTGTTGCCGTAGATCAAAACAGTTTTTTTATATGCTCAGCCAAACAGAAACTAGGGATTCTAGGCCGCCAAATCCTGTCCAGCTAAGAAACGAACAACATTCAGGTTTTGGAAAAATGATCATCTATGGGCTGTCCTTGACTCAATTATACAACTTCTTGACGGCAAATCATTGGCTCACTTTTATGGTCGTCTGG</canonical_amplicon>
		<polymorphic_amplicon>ATCTAATGGTCGGTCATAAAACAAGGCCGTGGTTCTGGCCTGTTGCCGTAGATCAAAACAGTTTTTTTATATGCTCAGCCAAACAGAAACTAGGGATTCTAGGCCGCCAAATCCTGTCCAGCTAAGAAACGAACAACATTCAGGTTTTGGAAAAATGATCATCTATGGGCTGTCCWTGACTCAATTATACAACTTCTTGACGGCAAATCATTGGCTCACTTTTATGGTCGTCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26691</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>334158</contig_pos>
        <strand>+</strand>
        <context>CACCTAAACT[C/T]AGCAATCCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTCATTATTGCCCTTGACAGGACTTGTGTGAGTTTTACACACCTAAACT</left_flank>
        <right_flank>AGCAATCCATTACTTTTTCAGGCCGCCTACTGTCCTACAATCTTTTCCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCCCTAAAGGTACATGGTGACATATTGGGGGTCTCAATTGAGATGTTTTGAATTTACACCCGTTTTGATCTACTTGTAAGTTTATTTTTTTGGTGCTGGGCAGTTATACTGAACTGGGAGGTACTATTGATTTCTGAAGCTCCTGCATTTCGCCTTATCTAACGGCGGGTCTTGATCTAATGGTCGGTCATAAAACAAGGCCGTGGTTCTGGCCTGTTGCCGTAGATCAAAACAGTTTTTTTATATGCTCAGCCAAACAGAAACTAGGGATTCTAGGCCGCCAAATCCTGTCCAGCTAAGAAACGAACAACATTCAGGTTTTGGAAAAATGATCATCTATGGGCTGTCCTTGACTCAATTATACAACTTCTTGACGGCAAATCATTGGCTCACTTTTATGGTCGTCTGGCCTGTTAGCGCTTCGAGCAATGTGAGAGCAGTTTTGATCTTCATTATTGCCCTTGACAGGACTTGTGTGAGTTTTACACACCTAAACTTAGCAATCCATTACTTTTTCAGGCCGCCTACTGTCCTACAATCTTTTCCAAGTACCGTAAACTAATACCGACTGTTCATGTGATTTTCTTTGTTTCATCATTTCTTGTGATTGAAACATTGATAGCTTTTCACATTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGTTTATCAATGGAGCCTGTTATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACACTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGGGATAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCC</canonical>
            <polymorphic>GTCCCCTAAAGGTACATGGTGACATATTGGGGGTCTCAATTGAGATGTTTTGAATTTACACCCGTTTTGATCTACTTGTAAGTTTATTTTTTTGGTGCTGGGCAGTTATACTGAACTGGGAGGTACTATTGATTTCTGAAGCTCCTGCATTTCGCCTTATCTAACGGCGGGTCTTGATCTAATGGTCGGTCATAAAACAAGGCCGTGGTTCTGGCCTGTTGCCGTAGATCAAAACAGTTTTTTTATATGCTCAGCCAAACAGAAACTAGGGATTCTAGGCCGCCAAATCCTGTCCAGCTAAGAAACGAACAACATTCAGGTTTTGGAAAAATGATCATCTATGGGCTGTCCTTGACTCAATTATACAACTTCTTGACGGCAAATCATTGGCTCACTTTTATGGTCGTCTGGCCTGTTAGCGCTTCGAGCAATGTGAGAGCAGTTTTGATCTTCATTATTGCCCTTGACAGGACTTGTGTGAGTTTTACACACCTAAACTYAGCAATCCATTACTTTTTCAGGCCGCCTACTGTCCTACAATCTTTTCCAAGTACCGTAAACTAATACCGACTGTTCATGTGATTTTCTTTGTTTCATCATTTCTTGTGATTGAAACATTGATAGCTTTTCACATTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGTTTATCAATGGAGCCTGTTATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACACTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGGGATAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAATCATTGGCTCACTTTTAT</pcr_primer_p1>
		<pcr_primer_p2>AAAGCTATCAATGTTTCAATCAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAATCATTGGCTCACTTTTATGGTCGTCTGGCCTGTTAGCGCTTCGAGCAATGTGAGAGCAGTTTTGATCTTCATTATTGCCCTTGACAGGACTTGTGTGAGTTTTACACACCTAAACTTAGCAATCCATTACTTTTTCAGGCCGCCTACTGTCCTACAATCTTTTCCAAGTACCGTAAACTAATACCGACTGTTCATGTGATTTTCTTTGTTTCATCATTTCTTGTGATTGAAACATTGATAGCTTT</canonical_amplicon>
		<polymorphic_amplicon>CAAATCATTGGCTCACTTTTATGGTCGTCTGGCCTGTTAGCGCTTCGAGCAATGTGAGAGCAGTTTTGATCTTCATTATTGCCCTTGACAGGACTTGTGTGAGTTTTACACACCTAAACTYAGCAATCCATTACTTTTTCAGGCCGCCTACTGTCCTACAATCTTTTCCAAGTACCGTAAACTAATACCGACTGTTCATGTGATTTTCTTTGTTTCATCATTTCTTGTGATTGAAACATTGATAGCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26692</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>334340</contig_pos>
        <strand>+</strand>
        <context>GAGGCGCAGT[G/T]TATCAATGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGT</left_flank>
        <right_flank>TATCAATGGAGCCTGTTATCACAATTATTGGATAACGTTTTCGAAAATCC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTCGGTCATAAAACAAGGCCGTGGTTCTGGCCTGTTGCCGTAGATCAAAACAGTTTTTTTATATGCTCAGCCAAACAGAAACTAGGGATTCTAGGCCGCCAAATCCTGTCCAGCTAAGAAACGAACAACATTCAGGTTTTGGAAAAATGATCATCTATGGGCTGTCCTTGACTCAATTATACAACTTCTTGACGGCAAATCATTGGCTCACTTTTATGGTCGTCTGGCCTGTTAGCGCTTCGAGCAATGTGAGAGCAGTTTTGATCTTCATTATTGCCCTTGACAGGACTTGTGTGAGTTTTACACACCTAAACTTAGCAATCCATTACTTTTTCAGGCCGCCTACTGTCCTACAATCTTTTCCAAGTACCGTAAACTAATACCGACTGTTCATGTGATTTTCTTTGTTTCATCATTTCTTGTGATTGAAACATTGATAGCTTTTCACATTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGTTTATCAATGGAGCCTGTTATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACACTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGGGATAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTATTATAAATATGCAACAGAAGTATCGAATCGACAGTGTGAAGCCGTCTGCAAAATCTATGTATCCATCAGAAATTAATTGAATTTTAGCAAAACAGTCTTTTGATCTCATGTTATTCCATGCTCCAGACAAATGCTCAGCAAACAAA</canonical>
            <polymorphic>TGGTCGGTCATAAAACAAGGCCGTGGTTCTGGCCTGTTGCCGTAGATCAAAACAGTTTTTTTATATGCTCAGCCAAACAGAAACTAGGGATTCTAGGCCGCCAAATCCTGTCCAGCTAAGAAACGAACAACATTCAGGTTTTGGAAAAATGATCATCTATGGGCTGTCCTTGACTCAATTATACAACTTCTTGACGGCAAATCATTGGCTCACTTTTATGGTCGTCTGGCCTGTTAGCGCTTCGAGCAATGTGAGAGCAGTTTTGATCTTCATTATTGCCCTTGACAGGACTTGTGTGAGTTTTACACACCTAAACTTAGCAATCCATTACTTTTTCAGGCCGCCTACTGTCCTACAATCTTTTCCAAGTACCGTAAACTAATACCGACTGTTCATGTGATTTTCTTTGTTTCATCATTTCTTGTGATTGAAACATTGATAGCTTTTCACATTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGTKTATCAATGGAGCCTGTTATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACACTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGGGATAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTATTATAAATATGCAACAGAAGTATCGAATCGACAGTGTGAAGCCGTCTGCAAAATCTATGTATCCATCAGAAATTAATTGAATTTTAGCAAAACAGTCTTTTGATCTCATGTTATTCCATGCTCCAGACAAATGCTCAGCAAACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAATACCGACTGTTCATGTGAT</pcr_primer_p1>
		<pcr_primer_p2>CATGTTGCTTCTTGTATCTATCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAATACCGACTGTTCATGTGATTTTCTTTGTTTCATCATTTCTTGTGATTGAAACATTGATAGCTTTTCACATTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGTTTATCAATGGAGCCTGTTATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACACTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGGGATAGATACAAGAAGCAACATG</canonical_amplicon>
		<polymorphic_amplicon>CTAATACCGACTGTTCATGTGATTTTCTTTGTTTCATCATTTCTTGTGATTGAAACATTGATAGCTTTTCACATTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGTKTATCAATGGAGCCTGTTATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACACTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGGGATAGATACAAGAAGCAACATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26693</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>334357</contig_pos>
        <strand>+</strand>
        <context>TGGAGCCTGT[C/T]ATCACAATTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAACATCCCAACAGACTGTATAGAGGCGCAGTTTATCAATGGAGCCTGT</left_flank>
        <right_flank>ATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACACTCTTATCATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGCCGTGGTTCTGGCCTGTTGCCGTAGATCAAAACAGTTTTTTTATATGCTCAGCCAAACAGAAACTAGGGATTCTAGGCCGCCAAATCCTGTCCAGCTAAGAAACGAACAACATTCAGGTTTTGGAAAAATGATCATCTATGGGCTGTCCTTGACTCAATTATACAACTTCTTGACGGCAAATCATTGGCTCACTTTTATGGTCGTCTGGCCTGTTAGCGCTTCGAGCAATGTGAGAGCAGTTTTGATCTTCATTATTGCCCTTGACAGGACTTGTGTGAGTTTTACACACCTAAACTTAGCAATCCATTACTTTTTCAGGCCGCCTACTGTCCTACAATCTTTTCCAAGTACCGTAAACTAATACCGACTGTTCATGTGATTTTCTTTGTTTCATCATTTCTTGTGATTGAAACATTGATAGCTTTTCACATTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGTTTATCAATGGAGCCTGTTATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACACTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGGGATAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTATTATAAATATGCAACAGAAGTATCGAATCGACAGTGTGAAGCCGTCTGCAAAATCTATGTATCCATCAGAAATTAATTGAATTTTAGCAAAACAGTCTTTTGATCTCATGTTATTCCATGCTCCAGACAAATGCTCAGCAAACAAATGACATTAAACAAATTT</canonical>
            <polymorphic>AGGCCGTGGTTCTGGCCTGTTGCCGTAGATCAAAACAGTTTTTTTATATGCTCAGCCAAACAGAAACTAGGGATTCTAGGCCGCCAAATCCTGTCCAGCTAAGAAACGAACAACATTCAGGTTTTGGAAAAATGATCATCTATGGGCTGTCCTTGACTCAATTATACAACTTCTTGACGGCAAATCATTGGCTCACTTTTATGGTCGTCTGGCCTGTTAGCGCTTCGAGCAATGTGAGAGCAGTTTTGATCTTCATTATTGCCCTTGACAGGACTTGTGTGAGTTTTACACACCTAAACTTAGCAATCCATTACTTTTTCAGGCCGCCTACTGTCCTACAATCTTTTCCAAGTACCGTAAACTAATACCGACTGTTCATGTGATTTTCTTTGTTTCATCATTTCTTGTGATTGAAACATTGATAGCTTTTCACATTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGTTTATCAATGGAGCCTGTYATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACACTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGGGATAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTATTATAAATATGCAACAGAAGTATCGAATCGACAGTGTGAAGCCGTCTGCAAAATCTATGTATCCATCAGAAATTAATTGAATTTTAGCAAAACAGTCTTTTGATCTCATGTTATTCCATGCTCCAGACAAATGCTCAGCAAACAAATGACATTAAACAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAATACCGACTGTTCATGTGAT</pcr_primer_p1>
		<pcr_primer_p2>CATGTTGCTTCTTGTATCTATCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAATACCGACTGTTCATGTGATTTTCTTTGTTTCATCATTTCTTGTGATTGAAACATTGATAGCTTTTCACATTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGTTTATCAATGGAGCCTGTTATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACACTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGGGATAGATACAAGAAGCAACATG</canonical_amplicon>
		<polymorphic_amplicon>CTAATACCGACTGTTCATGTGATTTTCTTTGTTTCATCATTTCTTGTGATTGAAACATTGATAGCTTTTCACATTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGTTTATCAATGGAGCCTGTYATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACACTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGGGATAGATACAAGAAGCAACATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26694</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>334396</contig_pos>
        <strand>+</strand>
        <context>AATCCTTTAC[A/C]CTCTTATCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGGAGCCTGTTATCACAATTATTGGATAACGTTTTCGAAAATCCTTTAC</left_flank>
        <right_flank>CTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGG</right_flank>
        <qual_score>146</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTATATGCTCAGCCAAACAGAAACTAGGGATTCTAGGCCGCCAAATCCTGTCCAGCTAAGAAACGAACAACATTCAGGTTTTGGAAAAATGATCATCTATGGGCTGTCCTTGACTCAATTATACAACTTCTTGACGGCAAATCATTGGCTCACTTTTATGGTCGTCTGGCCTGTTAGCGCTTCGAGCAATGTGAGAGCAGTTTTGATCTTCATTATTGCCCTTGACAGGACTTGTGTGAGTTTTACACACCTAAACTTAGCAATCCATTACTTTTTCAGGCCGCCTACTGTCCTACAATCTTTTCCAAGTACCGTAAACTAATACCGACTGTTCATGTGATTTTCTTTGTTTCATCATTTCTTGTGATTGAAACATTGATAGCTTTTCACATTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGTTTATCAATGGAGCCTGTTATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACACTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGGGATAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTATTATAAATATGCAACAGAAGTATCGAATCGACAGTGTGAAGCCGTCTGCAAAATCTATGTATCCATCAGAAATTAATTGAATTTTAGCAAAACAGTCTTTTGATCTCATGTTATTCCATGCTCCAGACAAATGCTCAGCAAACAAATGACATTAAACAAATTTTATTTTTCAAAACTAATTCATCCTGGAAAAGTGTTTATG</canonical>
            <polymorphic>TTTTTTATATGCTCAGCCAAACAGAAACTAGGGATTCTAGGCCGCCAAATCCTGTCCAGCTAAGAAACGAACAACATTCAGGTTTTGGAAAAATGATCATCTATGGGCTGTCCTTGACTCAATTATACAACTTCTTGACGGCAAATCATTGGCTCACTTTTATGGTCGTCTGGCCTGTTAGCGCTTCGAGCAATGTGAGAGCAGTTTTGATCTTCATTATTGCCCTTGACAGGACTTGTGTGAGTTTTACACACCTAAACTTAGCAATCCATTACTTTTTCAGGCCGCCTACTGTCCTACAATCTTTTCCAAGTACCGTAAACTAATACCGACTGTTCATGTGATTTTCTTTGTTTCATCATTTCTTGTGATTGAAACATTGATAGCTTTTCACATTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGTTTATCAATGGAGCCTGTTATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACMCTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGGGATAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTATTATAAATATGCAACAGAAGTATCGAATCGACAGTGTGAAGCCGTCTGCAAAATCTATGTATCCATCAGAAATTAATTGAATTTTAGCAAAACAGTCTTTTGATCTCATGTTATTCCATGCTCCAGACAAATGCTCAGCAAACAAATGACATTAAACAAATTTTATTTTTCAAAACTAATTCATCCTGGAAAAGTGTTTATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>170 158 156 90 74 72 52 43 41 38 35 27 23 9 6 2 2 2</canonical_bands>
                <polymorphic_bands>170 158 156 109 90 72 52 43 41 38 27 23 9 6 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAATACCGACTGTTCATGTGAT</pcr_primer_p1>
		<pcr_primer_p2>CATGTTGCTTCTTGTATCTATCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAATACCGACTGTTCATGTGATTTTCTTTGTTTCATCATTTCTTGTGATTGAAACATTGATAGCTTTTCACATTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGTTTATCAATGGAGCCTGTTATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACACTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGGGATAGATACAAGAAGCAACATG</canonical_amplicon>
		<polymorphic_amplicon>CTAATACCGACTGTTCATGTGATTTTCTTTGTTTCATCATTTCTTGTGATTGAAACATTGATAGCTTTTCACATTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGTTTATCAATGGAGCCTGTTATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACMCTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGGGATAGATACAAGAAGCAACATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26695</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>334503</contig_pos>
        <strand>+</strand>
        <context>GCTGAGCAAT[A/G]AAAAACAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAAT</left_flank>
        <right_flank>AAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTCCTTGACTCAATTATACAACTTCTTGACGGCAAATCATTGGCTCACTTTTATGGTCGTCTGGCCTGTTAGCGCTTCGAGCAATGTGAGAGCAGTTTTGATCTTCATTATTGCCCTTGACAGGACTTGTGTGAGTTTTACACACCTAAACTTAGCAATCCATTACTTTTTCAGGCCGCCTACTGTCCTACAATCTTTTCCAAGTACCGTAAACTAATACCGACTGTTCATGTGATTTTCTTTGTTTCATCATTTCTTGTGATTGAAACATTGATAGCTTTTCACATTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGTTTATCAATGGAGCCTGTTATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACACTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGGGATAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTATTATAAATATGCAACAGAAGTATCGAATCGACAGTGTGAAGCCGTCTGCAAAATCTATGTATCCATCAGAAATTAATTGAATTTTAGCAAAACAGTCTTTTGATCTCATGTTATTCCATGCTCCAGACAAATGCTCAGCAAACAAATGACATTAAACAAATTTTATTTTTCAAAACTAATTCATCCTGGAAAAGTGTTTATGACACATTCATTCTGACCACCCAACACCCACCATTTCCTTTTTTGCTATTCTACAGATTTTCATTTCTCTCAAGTCCCTTTTAACAATGTTTGTATCCGCTATGCTAA</canonical>
            <polymorphic>CTGTCCTTGACTCAATTATACAACTTCTTGACGGCAAATCATTGGCTCACTTTTATGGTCGTCTGGCCTGTTAGCGCTTCGAGCAATGTGAGAGCAGTTTTGATCTTCATTATTGCCCTTGACAGGACTTGTGTGAGTTTTACACACCTAAACTTAGCAATCCATTACTTTTTCAGGCCGCCTACTGTCCTACAATCTTTTCCAAGTACCGTAAACTAATACCGACTGTTCATGTGATTTTCTTTGTTTCATCATTTCTTGTGATTGAAACATTGATAGCTTTTCACATTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGTTTATCAATGGAGCCTGTTATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACACTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGGGATAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATRAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTATTATAAATATGCAACAGAAGTATCGAATCGACAGTGTGAAGCCGTCTGCAAAATCTATGTATCCATCAGAAATTAATTGAATTTTAGCAAAACAGTCTTTTGATCTCATGTTATTCCATGCTCCAGACAAATGCTCAGCAAACAAATGACATTAAACAAATTTTATTTTTCAAAACTAATTCATCCTGGAAAAGTGTTTATGACACATTCATTCTGACCACCCAACACCCACCATTTCCTTTTTTGCTATTCTACAGATTTTCATTTCTCTCAAGTCCCTTTTAACAATGTTTGTATCCGCTATGCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGATACAAGAAGCAACATGTGA</pcr_primer_p1>
		<pcr_primer_p2>ATAGTTAGCCAAGATTCCACAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTAT</canonical_amplicon>
		<polymorphic_amplicon>TAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATRAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26696</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>334563</contig_pos>
        <strand>+</strand>
        <context>TTAATTGAAA[A/C]ATTYATCATA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAA</left_flank>
        <right_flank>ATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTGGCCTGTTAGCGCTTCGAGCAATGTGAGAGCAGTTTTGATCTTCATTATTGCCCTTGACAGGACTTGTGTGAGTTTTACACACCTAAACTTAGCAATCCATTACTTTTTCAGGCCGCCTACTGTCCTACAATCTTTTCCAAGTACCGTAAACTAATACCGACTGTTCATGTGATTTTCTTTGTTTCATCATTTCTTGTGATTGAAACATTGATAGCTTTTCACATTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGTTTATCAATGGAGCCTGTTATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACACTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGGGATAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTATTATAAATATGCAACAGAAGTATCGAATCGACAGTGTGAAGCCGTCTGCAAAATCTATGTATCCATCAGAAATTAATTGAATTTTAGCAAAACAGTCTTTTGATCTCATGTTATTCCATGCTCCAGACAAATGCTCAGCAAACAAATGACATTAAACAAATTTTATTTTTCAAAACTAATTCATCCTGGAAAAGTGTTTATGACACATTCATTCTGACCACCCAACACCCACCATTTCCTTTTTTGCTATTCTACAGATTTTCATTTCTCTCAAGTCCCTTTTAACAATGTTTGTATCCGCTATGCTAATTAACATAATTGCAATTAGCTTCCCATTCATTTCTATGATGTTTTATTCAAGATTGTTGC</canonical>
            <polymorphic>GTCTGGCCTGTTAGCGCTTCGAGCAATGTGAGAGCAGTTTTGATCTTCATTATTGCCCTTGACAGGACTTGTGTGAGTTTTACACACCTAAACTTAGCAATCCATTACTTTTTCAGGCCGCCTACTGTCCTACAATCTTTTCCAAGTACCGTAAACTAATACCGACTGTTCATGTGATTTTCTTTGTTTCATCATTTCTTGTGATTGAAACATTGATAGCTTTTCACATTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGTTTATCAATGGAGCCTGTTATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACACTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGGGATAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAAMATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTATTATAAATATGCAACAGAAGTATCGAATCGACAGTGTGAAGCCGTCTGCAAAATCTATGTATCCATCAGAAATTAATTGAATTTTAGCAAAACAGTCTTTTGATCTCATGTTATTCCATGCTCCAGACAAATGCTCAGCAAACAAATGACATTAAACAAATTTTATTTTTCAAAACTAATTCATCCTGGAAAAGTGTTTATGACACATTCATTCTGACCACCCAACACCCACCATTTCCTTTTTTGCTATTCTACAGATTTTCATTTCTCTCAAGTCCCTTTTAACAATGTTTGTATCCGCTATGCTAATTAACATAATTGCAATTAGCTTCCCATTCATTTCTATGATGTTTTATTCAAGATTGTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGATACAAGAAGCAACATGTGA</pcr_primer_p1>
		<pcr_primer_p2>ATAGTTAGCCAAGATTCCACAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTAT</canonical_amplicon>
		<polymorphic_amplicon>TAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAAMATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26697</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>334567</contig_pos>
        <strand>+</strand>
        <context>TTGAAAMATT[C/T]ATCATARWAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATT</left_flank>
        <right_flank>ATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCCTGTTAGCGCTTCGAGCAATGTGAGAGCAGTTTTGATCTTCATTATTGCCCTTGACAGGACTTGTGTGAGTTTTACACACCTAAACTTAGCAATCCATTACTTTTTCAGGCCGCCTACTGTCCTACAATCTTTTCCAAGTACCGTAAACTAATACCGACTGTTCATGTGATTTTCTTTGTTTCATCATTTCTTGTGATTGAAACATTGATAGCTTTTCACATTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGTTTATCAATGGAGCCTGTTATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACACTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGGGATAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTATTATAAATATGCAACAGAAGTATCGAATCGACAGTGTGAAGCCGTCTGCAAAATCTATGTATCCATCAGAAATTAATTGAATTTTAGCAAAACAGTCTTTTGATCTCATGTTATTCCATGCTCCAGACAAATGCTCAGCAAACAAATGACATTAAACAAATTTTATTTTTCAAAACTAATTCATCCTGGAAAAGTGTTTATGACACATTCATTCTGACCACCCAACACCCACCATTTCCTTTTTTGCTATTCTACAGATTTTCATTTCTCTCAAGTCCCTTTTAACAATGTTTGTATCCGCTATGCTAATTAACATAATTGCAATTAGCTTCCCATTCATTTCTATGATGTTTTATTCAAGATTGTTGCTAAA</canonical>
            <polymorphic>GGCCTGTTAGCGCTTCGAGCAATGTGAGAGCAGTTTTGATCTTCATTATTGCCCTTGACAGGACTTGTGTGAGTTTTACACACCTAAACTTAGCAATCCATTACTTTTTCAGGCCGCCTACTGTCCTACAATCTTTTCCAAGTACCGTAAACTAATACCGACTGTTCATGTGATTTTCTTTGTTTCATCATTTCTTGTGATTGAAACATTGATAGCTTTTCACATTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGTTTATCAATGGAGCCTGTTATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACACTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGGGATAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTYATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTATTATAAATATGCAACAGAAGTATCGAATCGACAGTGTGAAGCCGTCTGCAAAATCTATGTATCCATCAGAAATTAATTGAATTTTAGCAAAACAGTCTTTTGATCTCATGTTATTCCATGCTCCAGACAAATGCTCAGCAAACAAATGACATTAAACAAATTTTATTTTTCAAAACTAATTCATCCTGGAAAAGTGTTTATGACACATTCATTCTGACCACCCAACACCCACCATTTCCTTTTTTGCTATTCTACAGATTTTCATTTCTCTCAAGTCCCTTTTAACAATGTTTGTATCCGCTATGCTAATTAACATAATTGCAATTAGCTTCCCATTCATTTCTATGATGTTTTATTCAAGATTGTTGCTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGATACAAGAAGCAACATGTGA</pcr_primer_p1>
		<pcr_primer_p2>ATAGTTAGCCAAGATTCCACAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTAT</canonical_amplicon>
		<polymorphic_amplicon>TAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTYATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26698</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>334574</contig_pos>
        <strand>+</strand>
        <context>ATTYATCATA[A/G]WAATGTTCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATA</left_flank>
        <right_flank>AAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGCGCTTCGAGCAATGTGAGAGCAGTTTTGATCTTCATTATTGCCCTTGACAGGACTTGTGTGAGTTTTACACACCTAAACTTAGCAATCCATTACTTTTTCAGGCCGCCTACTGTCCTACAATCTTTTCCAAGTACCGTAAACTAATACCGACTGTTCATGTGATTTTCTTTGTTTCATCATTTCTTGTGATTGAAACATTGATAGCTTTTCACATTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGTTTATCAATGGAGCCTGTTATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACACTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGGGATAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTATTATAAATATGCAACAGAAGTATCGAATCGACAGTGTGAAGCCGTCTGCAAAATCTATGTATCCATCAGAAATTAATTGAATTTTAGCAAAACAGTCTTTTGATCTCATGTTATTCCATGCTCCAGACAAATGCTCAGCAAACAAATGACATTAAACAAATTTTATTTTTCAAAACTAATTCATCCTGGAAAAGTGTTTATGACACATTCATTCTGACCACCCAACACCCACCATTTCCTTTTTTGCTATTCTACAGATTTTCATTTCTCTCAAGTCCCTTTTAACAATGTTTGTATCCGCTATGCTAATTAACATAATTGCAATTAGCTTCCCATTCATTTCTATGATGTTTTATTCAAGATTGTTGCTAAATATATTT</canonical>
            <polymorphic>TAGCGCTTCGAGCAATGTGAGAGCAGTTTTGATCTTCATTATTGCCCTTGACAGGACTTGTGTGAGTTTTACACACCTAAACTTAGCAATCCATTACTTTTTCAGGCCGCCTACTGTCCTACAATCTTTTCCAAGTACCGTAAACTAATACCGACTGTTCATGTGATTTTCTTTGTTTCATCATTTCTTGTGATTGAAACATTGATAGCTTTTCACATTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGTTTATCAATGGAGCCTGTTATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACACTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGGGATAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATARAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTATTATAAATATGCAACAGAAGTATCGAATCGACAGTGTGAAGCCGTCTGCAAAATCTATGTATCCATCAGAAATTAATTGAATTTTAGCAAAACAGTCTTTTGATCTCATGTTATTCCATGCTCCAGACAAATGCTCAGCAAACAAATGACATTAAACAAATTTTATTTTTCAAAACTAATTCATCCTGGAAAAGTGTTTATGACACATTCATTCTGACCACCCAACACCCACCATTTCCTTTTTTGCTATTCTACAGATTTTCATTTCTCTCAAGTCCCTTTTAACAATGTTTGTATCCGCTATGCTAATTAACATAATTGCAATTAGCTTCCCATTCATTTCTATGATGTTTTATTCAAGATTGTTGCTAAATATATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGATACAAGAAGCAACATGTGA</pcr_primer_p1>
		<pcr_primer_p2>ATAGTTAGCCAAGATTCCACAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTAT</canonical_amplicon>
		<polymorphic_amplicon>TAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATARAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26699</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>334575</contig_pos>
        <strand>+</strand>
        <context>TTYATCATAR[A/T]AATGTTCGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAA</left_flank>
        <right_flank>AATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCGCTTCGAGCAATGTGAGAGCAGTTTTGATCTTCATTATTGCCCTTGACAGGACTTGTGTGAGTTTTACACACCTAAACTTAGCAATCCATTACTTTTTCAGGCCGCCTACTGTCCTACAATCTTTTCCAAGTACCGTAAACTAATACCGACTGTTCATGTGATTTTCTTTGTTTCATCATTTCTTGTGATTGAAACATTGATAGCTTTTCACATTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGTTTATCAATGGAGCCTGTTATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACACTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGGGATAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTATTATAAATATGCAACAGAAGTATCGAATCGACAGTGTGAAGCCGTCTGCAAAATCTATGTATCCATCAGAAATTAATTGAATTTTAGCAAAACAGTCTTTTGATCTCATGTTATTCCATGCTCCAGACAAATGCTCAGCAAACAAATGACATTAAACAAATTTTATTTTTCAAAACTAATTCATCCTGGAAAAGTGTTTATGACACATTCATTCTGACCACCCAACACCCACCATTTCCTTTTTTGCTATTCTACAGATTTTCATTTCTCTCAAGTCCCTTTTAACAATGTTTGTATCCGCTATGCTAATTAACATAATTGCAATTAGCTTCCCATTCATTTCTATGATGTTTTATTCAAGATTGTTGCTAAATATATTTC</canonical>
            <polymorphic>AGCGCTTCGAGCAATGTGAGAGCAGTTTTGATCTTCATTATTGCCCTTGACAGGACTTGTGTGAGTTTTACACACCTAAACTTAGCAATCCATTACTTTTTCAGGCCGCCTACTGTCCTACAATCTTTTCCAAGTACCGTAAACTAATACCGACTGTTCATGTGATTTTCTTTGTTTCATCATTTCTTGTGATTGAAACATTGATAGCTTTTCACATTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGTTTATCAATGGAGCCTGTTATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACACTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGGGATAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAAWAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTATTATAAATATGCAACAGAAGTATCGAATCGACAGTGTGAAGCCGTCTGCAAAATCTATGTATCCATCAGAAATTAATTGAATTTTAGCAAAACAGTCTTTTGATCTCATGTTATTCCATGCTCCAGACAAATGCTCAGCAAACAAATGACATTAAACAAATTTTATTTTTCAAAACTAATTCATCCTGGAAAAGTGTTTATGACACATTCATTCTGACCACCCAACACCCACCATTTCCTTTTTTGCTATTCTACAGATTTTCATTTCTCTCAAGTCCCTTTTAACAATGTTTGTATCCGCTATGCTAATTAACATAATTGCAATTAGCTTCCCATTCATTTCTATGATGTTTTATTCAAGATTGTTGCTAAATATATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGATACAAGAAGCAACATGTGA</pcr_primer_p1>
		<pcr_primer_p2>ATAGTTAGCCAAGATTCCACAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTAT</canonical_amplicon>
		<polymorphic_amplicon>TAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAAWAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26700</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>334608</contig_pos>
        <strand>+</strand>
        <context>ATTATAAATT[C/G]TTTYTATCCG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGAAACATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATT</left_flank>
        <right_flank>TTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCATTATTGCCCTTGACAGGACTTGTGTGAGTTTTACACACCTAAACTTAGCAATCCATTACTTTTTCAGGCCGCCTACTGTCCTACAATCTTTTCCAAGTACCGTAAACTAATACCGACTGTTCATGTGATTTTCTTTGTTTCATCATTTCTTGTGATTGAAACATTGATAGCTTTTCACATTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGTTTATCAATGGAGCCTGTTATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACACTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGGGATAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTATTATAAATATGCAACAGAAGTATCGAATCGACAGTGTGAAGCCGTCTGCAAAATCTATGTATCCATCAGAAATTAATTGAATTTTAGCAAAACAGTCTTTTGATCTCATGTTATTCCATGCTCCAGACAAATGCTCAGCAAACAAATGACATTAAACAAATTTTATTTTTCAAAACTAATTCATCCTGGAAAAGTGTTTATGACACATTCATTCTGACCACCCAACACCCACCATTTCCTTTTTTGCTATTCTACAGATTTTCATTTCTCTCAAGTCCCTTTTAACAATGTTTGTATCCGCTATGCTAATTAACATAATTGCAATTAGCTTCCCATTCATTTCTATGATGTTTTATTCAAGATTGTTGCTAAATATATTTCTGTAAGTAATTATACAGAAAACTTGAAAAGATT</canonical>
            <polymorphic>TTCATTATTGCCCTTGACAGGACTTGTGTGAGTTTTACACACCTAAACTTAGCAATCCATTACTTTTTCAGGCCGCCTACTGTCCTACAATCTTTTCCAAGTACCGTAAACTAATACCGACTGTTCATGTGATTTTCTTTGTTTCATCATTTCTTGTGATTGAAACATTGATAGCTTTTCACATTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGTTTATCAATGGAGCCTGTTATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACACTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGGGATAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTSTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTATTATAAATATGCAACAGAAGTATCGAATCGACAGTGTGAAGCCGTCTGCAAAATCTATGTATCCATCAGAAATTAATTGAATTTTAGCAAAACAGTCTTTTGATCTCATGTTATTCCATGCTCCAGACAAATGCTCAGCAAACAAATGACATTAAACAAATTTTATTTTTCAAAACTAATTCATCCTGGAAAAGTGTTTATGACACATTCATTCTGACCACCCAACACCCACCATTTCCTTTTTTGCTATTCTACAGATTTTCATTTCTCTCAAGTCCCTTTTAACAATGTTTGTATCCGCTATGCTAATTAACATAATTGCAATTAGCTTCCCATTCATTTCTATGATGTTTTATTCAAGATTGTTGCTAAATATATTTCTGTAAGTAATTATACAGAAAACTTGAAAAGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGATACAAGAAGCAACATGTGA</pcr_primer_p1>
		<pcr_primer_p2>ATAGTTAGCCAAGATTCCACAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTAT</canonical_amplicon>
		<polymorphic_amplicon>TAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTSTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26701</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>334612</contig_pos>
        <strand>+</strand>
        <context>TAAATTSTTT[C/T]TATCCGGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTT</left_flank>
        <right_flank>TATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATTGCCCTTGACAGGACTTGTGTGAGTTTTACACACCTAAACTTAGCAATCCATTACTTTTTCAGGCCGCCTACTGTCCTACAATCTTTTCCAAGTACCGTAAACTAATACCGACTGTTCATGTGATTTTCTTTGTTTCATCATTTCTTGTGATTGAAACATTGATAGCTTTTCACATTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGTTTATCAATGGAGCCTGTTATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACACTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGGGATAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTATTATAAATATGCAACAGAAGTATCGAATCGACAGTGTGAAGCCGTCTGCAAAATCTATGTATCCATCAGAAATTAATTGAATTTTAGCAAAACAGTCTTTTGATCTCATGTTATTCCATGCTCCAGACAAATGCTCAGCAAACAAATGACATTAAACAAATTTTATTTTTCAAAACTAATTCATCCTGGAAAAGTGTTTATGACACATTCATTCTGACCACCCAACACCCACCATTTCCTTTTTTGCTATTCTACAGATTTTCATTTCTCTCAAGTCCCTTTTAACAATGTTTGTATCCGCTATGCTAATTAACATAATTGCAATTAGCTTCCCATTCATTTCTATGATGTTTTATTCAAGATTGTTGCTAAATATATTTCTGTAAGTAATTATACAGAAAACTTGAAAAGATTTTTT</canonical>
            <polymorphic>TTATTGCCCTTGACAGGACTTGTGTGAGTTTTACACACCTAAACTTAGCAATCCATTACTTTTTCAGGCCGCCTACTGTCCTACAATCTTTTCCAAGTACCGTAAACTAATACCGACTGTTCATGTGATTTTCTTTGTTTCATCATTTCTTGTGATTGAAACATTGATAGCTTTTCACATTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGTTTATCAATGGAGCCTGTTATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACACTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGGGATAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTYTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTATTATAAATATGCAACAGAAGTATCGAATCGACAGTGTGAAGCCGTCTGCAAAATCTATGTATCCATCAGAAATTAATTGAATTTTAGCAAAACAGTCTTTTGATCTCATGTTATTCCATGCTCCAGACAAATGCTCAGCAAACAAATGACATTAAACAAATTTTATTTTTCAAAACTAATTCATCCTGGAAAAGTGTTTATGACACATTCATTCTGACCACCCAACACCCACCATTTCCTTTTTTGCTATTCTACAGATTTTCATTTCTCTCAAGTCCCTTTTAACAATGTTTGTATCCGCTATGCTAATTAACATAATTGCAATTAGCTTCCCATTCATTTCTATGATGTTTTATTCAAGATTGTTGCTAAATATATTTCTGTAAGTAATTATACAGAAAACTTGAAAAGATTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGATACAAGAAGCAACATGTGA</pcr_primer_p1>
		<pcr_primer_p2>ATAGTTAGCCAAGATTCCACAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTAT</canonical_amplicon>
		<polymorphic_amplicon>TAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTYTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26702</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>334791</contig_pos>
        <strand>+</strand>
        <context>GCAAAACAGT[C/G]TTTTGATCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGCAAAATCTATGTATCCATCAGAAATTAATTGAATTTTAGCAAAACAGT</left_flank>
        <right_flank>TTTTGATCTCATGTTATTCCATGCTCCAGACAAATGCTCAGCAAACAAAT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGTTTATCAATGGAGCCTGTTATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACACTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGGGATAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTATTATAAATATGCAACAGAAGTATCGAATCGACAGTGTGAAGCCGTCTGCAAAATCTATGTATCCATCAGAAATTAATTGAATTTTAGCAAAACAGTCTTTTGATCTCATGTTATTCCATGCTCCAGACAAATGCTCAGCAAACAAATGACATTAAACAAATTTTATTTTTCAAAACTAATTCATCCTGGAAAAGTGTTTATGACACATTCATTCTGACCACCCAACACCCACCATTTCCTTTTTTGCTATTCTACAGATTTTCATTTCTCTCAAGTCCCTTTTAACAATGTTTGTATCCGCTATGCTAATTAACATAATTGCAATTAGCTTCCCATTCATTTCTATGATGTTTTATTCAAGATTGTTGCTAAATATATTTCTGTAAGTAATTATACAGAAAACTTGAAAAGATTTTTTAAAACAATAAATTGCAGAACAAGAAAAATCAAAATCGCGCCAGAGTTGTATTTGTTTTACTGCAGATTTGTTCTAGACTTGCTGATTAGTTTTATCAGTAAGTTGGGACCGTTTGAAGCTTGAAAAAAGATCCTGCTCATTTAGGTTTTGTTAAAATGGTTGTCTATGCGCTGTCCATG</canonical>
            <polymorphic>TTTGCAAAATTGACCTAAACATCCCAACAGACTGTATAGAGGCGCAGTTTATCAATGGAGCCTGTTATCACAATTATTGGATAACGTTTTCGAAAATCCTTTACACTCTTATCATAGCCCTGACATTTATGCTCTGCTTGAAAATCTTCTTTTGGGATAGATACAAGAAGCAACATGTGAATGAAAATTTGAGAAGGATGGGCTGAGCAATAAAAAACAATATTTAACATATGAAGTTTATTTCAGGCTAATCGTTTAGCATTAATTGAAACATTTATCATAAAAATGTTCGATTTAATATCTCCAATTATAAATTGTTTTTATCCGGATTATTTTGAATTTGTCGGTGCTATGAATACAGTATGCCAGACGTTGGGATTCGTTGTGGAATCTTGGCTAACTATTATAAATATGCAACAGAAGTATCGAATCGACAGTGTGAAGCCGTCTGCAAAATCTATGTATCCATCAGAAATTAATTGAATTTTAGCAAAACAGTSTTTTGATCTCATGTTATTCCATGCTCCAGACAAATGCTCAGCAAACAAATGACATTAAACAAATTTTATTTTTCAAAACTAATTCATCCTGGAAAAGTGTTTATGACACATTCATTCTGACCACCCAACACCCACCATTTCCTTTTTTGCTATTCTACAGATTTTCATTTCTCTCAAGTCCCTTTTAACAATGTTTGTATCCGCTATGCTAATTAACATAATTGCAATTAGCTTCCCATTCATTTCTATGATGTTTTATTCAAGATTGTTGCTAAATATATTTCTGTAAGTAATTATACAGAAAACTTGAAAAGATTTTTTAAAACAATAAATTGCAGAACAAGAAAAATCAAAATCGCGCCAGAGTTGTATTTGTTTTACTGCAGATTTGTTCTAGACTTGCTGATTAGTTTTATCAGTAAGTTGGGACCGTTTGAAGCTTGAAAAAAGATCCTGCTCATTTAGGTTTTGTTAAAATGGTTGTCTATGCGCTGTCCATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTATCGAATCGACAGTGTG</pcr_primer_p1>
		<pcr_primer_p2>TGAAAATCTGTAGAATAGCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAGTATCGAATCGACAGTGTGAAGCCGTCTGCAAAATCTATGTATCCATCAGAAATTAATTGAATTTTAGCAAAACAGTCTTTTGATCTCATGTTATTCCATGCTCCAGACAAATGCTCAGCAAACAAATGACATTAAACAAATTTTATTTTTCAAAACTAATTCATCCTGGAAAAGTGTTTATGACACATTCATTCTGACCACCCAACACCCACCATTTCCTTTTTTGCTATTCTACAGATTTTCA</canonical_amplicon>
		<polymorphic_amplicon>AAGTATCGAATCGACAGTGTGAAGCCGTCTGCAAAATCTATGTATCCATCAGAAATTAATTGAATTTTAGCAAAACAGTSTTTTGATCTCATGTTATTCCATGCTCCAGACAAATGCTCAGCAAACAAATGACATTAAACAAATTTTATTTTTCAAAACTAATTCATCCTGGAAAAGTGTTTATGACACATTCATTCTGACCACCCAACACCCACCATTTCCTTTTTTGCTATTCTACAGATTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26718</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>362444</contig_pos>
        <strand>+</strand>
        <context>TCACCTTCAT[A/G]TGCTCTTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGTTAATATCTTTGTGTTCCCTCACCTTTCATGTCCCCTCACCTTCAT</left_flank>
        <right_flank>TGCTCTTTGAGAATTCTAGTTTGCTTTTATAACGAACGTAAATCCAATTA</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATGCACGTTTTTGGTAAAAATTTAGTACTGAAAACAATTTGAGAGCCCATATTTTTGTTCCTATTAGGGTTATGACCGAGATATTACTGAAATCGTATTCAGCATGTTCGAAAGTACATTTGTACAAATTTTGAGCTAATTATCAACGCCCCTCTGAAAACACTTCCCTTGTTAGCTGGTAGCGGCGCGGCACCTTCAGCGTTAAGTTCATAAGTTCAACTCCTCGAGTAAATGATTTCTTCGTTATATATAAAACGCTACACGCGTCTCTCCGTCCCGGTGTCCGGCTGTCAACTTTTGAATAAATTGAAAAATAACTACAGATTTACGTGACCCTTCAAGAAAAAGTGAAGCGCAAAGCTACGAACCAGTAAAAAACTAGAGTGAATCGCGCCGAAAGCGCACCAGCTTGCAGGTATAATAAATATATAAACGGAATTTTGAGAAAGTTAATATCTTTGTGTTCCCTCACCTTTCATGTCCCCTCACCTTCATGTGCTCTTTGAGAATTCTAGTTTGCTTTTATAACGAACGTAAATCCAATTATGTTACACGCCTTAACGGTTCCCAGATTATTGTCCTCATTAGCGCCCTATGCCGATATTTCCATAAATTCCCTGCATGTGGTGTTCGTTTTGACGAAATGCGAGAGAAACAACTTTTTTCATAGAAAAATATTCTTTTGATTTTTTGATTCGTTCTTCAAATCAGGCTGTTCAAAACTTTCGTCACTGAAAAACAAATCAGCTGTCCGAAATATGAACAGTTTTGCTTTTTTCAGGTGTCACAACAGTTTTTAAATTGTTTAATTGCGTCACACTGACTAGGACTTCGTAAATTTAGAAATTCAAAAATTCTGAAATTCGGGTTGTTTGTGTTTTTTGAGTTTCTGAAAGTTTCGTGATCATTGTGAAATCTGAAGGTTTCTATTTTTTTTATAACTTTTTTTTTGTTTGAGAAACAAAAAGCCCCAATCTCTGATATTGAAAAAGGTGT</canonical>
            <polymorphic>AAAAATGCACGTTTTTGGTAAAAATTTAGTACTGAAAACAATTTGAGAGCCCATATTTTTGTTCCTATTAGGGTTATGACCGAGATATTACTGAAATCGTATTCAGCATGTTCGAAAGTACATTTGTACAAATTTTGAGCTAATTATCAACGCCCCTCTGAAAACACTTCCCTTGTTAGCTGGTAGCGGCGCGGCACCTTCAGCGTTAAGTTCATAAGTTCAACTCCTCGAGTAAATGATTTCTTCGTTATATATAAAACGCTACACGCGTCTCTCCGTCCCGGTGTCCGGCTGTCAACTTTTGAATAAATTGAAAAATAACTACAGATTTACGTGACCCTTCAAGAAAAAGTGAAGCGCAAAGCTACGAACCAGTAAAAAACTAGAGTGAATCGCGCCGAAAGCGCACCAGCTTGCAGGTATAATAAATATATAAACGGAATTTTGAGAAAGTTAATATCTTTGTGTTCCCTCACCTTTCATGTCCCCTCACCTTCATRTGCTCTTTGAGAATTCTAGTTTGCTTTTATAACGAACGTAAATCCAATTATGTTACACGCCTTAACGGTTCCCAGATTATTGTCCTCATTAGCGCCCTATGCCGATATTTCCATAAATTCCCTGCATGTGGTGTTCGTTTTGACGAAATGCGAGAGAAACAACTTTTTTCATAGAAAAATATTCTTTTGATTTTTTGATTCGTTCTTCAAATCAGGCTGTTCAAAACTTTCGTCACTGAAAAACAAATCAGCTGTCCGAAATATGAACAGTTTTGCTTTTTTCAGGTGTCACAACAGTTTTTAAATTGTTTAATTGCGTCACACTGACTAGGACTTCGTAAATTTAGAAATTCAAAAATTCTGAAATTCGGGTTGTTTGTGTTTTTTGAGTTTCTGAAAGTTTCGTGATCATTGTGAAATCTGAAGGTTTCTATTTTTTTTATAACTTTTTTTTTGTTTGAGAAACAAAAAGCCCCAATCTCTGATATTGAAAAAGGTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>496 453 51</canonical_bands>
                <polymorphic_bands>949 51</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>375 374 128 107 16</canonical_bands>
                <polymorphic_bands>375 374 144 107</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>157 102 83 73 70 59 58 55 53 50 36 30 30 26 20 18 18 17 10 9 9 8 3 3 2 1</canonical_bands>
                <polymorphic_bands>157 102 83 73 70 65 59 58 53 50 36 30 30 26 20 18 18 17 9 9 8 3 3 2 1</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACGGAATTTTGAGAAAGTTAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAGTTGTTTCTCTCGCATTT</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>AACGGAATTTTGAGAAAGTTAATATCTTTGTGTTCCCTCACCTTTCATGTCCCCTCACCTTCATGTGCTCTTTGAGAATTCTAGTTTGCTTTTATAACGAACGTAAATCCAATTATGTTACACGCCTTAACGGTTCCCAGATTATTGTCCTCATTAGCGCCCTATGCCGATATTTCCATAAATTCCCTGCATGTGGTGTTCGTTTTGACGAAATGCGAGAGAAACAACTTT</canonical_amplicon>
		<polymorphic_amplicon>AACGGAATTTTGAGAAAGTTAATATCTTTGTGTTCCCTCACCTTTCATGTCCCCTCACCTTCATRTGCTCTTTGAGAATTCTAGTTTGCTTTTATAACGAACGTAAATCCAATTATGTTACACGCCTTAACGGTTCCCAGATTATTGTCCTCATTAGCGCCCTATGCCGATATTTCCATAAATTCCCTGCATGTGGTGTTCGTTTTGACGAAATGCGAGAGAAACAACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26719</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>364257</contig_pos>
        <strand>+</strand>
        <context>CAAATTTCAT[C/T]CAATTCAAYT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACACCAACACCAAGTACCTCATTTTCCTCCGCATTTTACCAAATTTCAT</left_flank>
        <right_flank>CAATTCAACTTCACTTCTTTCGTCAGCCTTCACAGATGCCTTGCGGTCAA</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCTGTTGAAGATTTGTTTTGCGTAGTAAATCTTCTTGAATAGTTAAAGATGTGTCACTGCCGGTGGAGCTACGCAGACGCAAATTTGGTTTAACAAGCCATTTGAAAAATGTAAAGCATACCAAGATTGGAAACTTTGGATTTATAGAGTTTTTGAATTTTCCTAGTTTCAGCTATNAAGCTTAAGGAACTATTTGGGCTGTAAACTTTAAACCGATATCTAGGTATTTAAGCATGTCATGATGACACCTTCTCCAACCCATCAACATCTTCTGAACCACCATGCAATCTTNNNNNNNNNNCAGCCGAGCTCCAGACTCTTGAAAACGGTATATGAAAGCCACGCGCTAATTCATACCGTAACTCCAAAAAAAATTTATGAAAATCTCCAGGACTTTCAACCAACCCATTTTCCAGCCGCCTGATTATGTTCATCATTGCCATCCTCTACACCAACACCAAGTACCTCATTTTCCTCCGCATTTTACCAAATTTCATCCAATTCAACTTCACTTCTTTCGTCAGCCTTCACAGATGCCTTGCGGTCAATGTTATCGATTTGGTTATGCTTCTCCTAACCCTAATTATCATTTTTGTCTACCTCCAACTCTCCACCGGACCATTAACTTTTGAGCAATCAGTGGTGATTTTTGAAACGGTTTGCTTGACAATATTAAAAATAGCTGGATTGATAATGGATATGATCTCTATTGGAATGTTTCGAAAAATGCACGAACACCATTTTCTGATTACCGGAGTGAATACGGAGACGATGCTCAGGAAGAACTACGAATTCACTCAGATGATCATTCCTTATCTTTTTATTATTTGTGGTTTCTTCATCAAGCTGGAGGAGGTTAGAAAGAAAGCGGCCGTATCGTTTACAAAAACTGGAGATAATGGAAATGTGGGATGTATGAAAAACGGAAAGACCAACAATACCAGCAATTCCGATGGTGCTCCGATTGGAGCTGCACCAGTAGCTGACCCAAAAGTTTG</canonical>
            <polymorphic>AAGCTGTTGAAGATTTGTTTTGCGTAGTAAATCTTCTTGAATAGTTAAAGATGTGTCACTGCCGGTGGAGCTACGCAGACGCAAATTTGGTTTAACAAGCCATTTGAAAAATGTAAAGCATACCAAGATTGGAAACTTTGGATTTATAGAGTTTTTGAATTTTCCTAGTTTCAGCTATNAAGCTTAAGGAACTATTTGGGCTGTAAACTTTAAACCGATATCTAGGTATTTAAGCATGTCATGATGACACCTTCTCCAACCCATCAACATCTTCTGAACCACCATGCAATCTTNNNNNNNNNNCAGCCGAGCTCCAGACTCTTGAAAACGGTATATGAAAGCCACGCGCTAATTCATACCGTAACTCCAAAAAAAATTTATGAAAATCTCCAGGACTTTCAACCAACCCATTTTCCAGCCGCCTGATTATGTTCATCATTGCCATCCTCTACACCAACACCAAGTACCTCATTTTCCTCCGCATTTTACCAAATTTCATYCAATTCAACTTCACTTCTTTCGTCAGCCTTCACAGATGCCTTGCGGTCAATGTTATCGATTTGGTTATGCTTCTCCTAACCCTAATTATCATTTTTGTCTACCTCCAACTCTCCACCGGACCATTAACTTTTGAGCAATCAGTGGTGATTTTTGAAACGGTTTGCTTGACAATATTAAAAATAGCTGGATTGATAATGGATATGATCTCTATTGGAATGTTTCGAAAAATGCACGAACACCATTTTCTGATTACCGGAGTGAATACGGAGACGATGCTCAGGAAGAACTACGAATTCACTCAGATGATCATTCCTTATCTTTTTATTATTTGTGGTTTCTTCATCAAGCTGGAGGAGGTTAGAAAGAAAGCGGCCGTATCGTTTACAAAAACTGGAGATAATGGAAATGTGGGATGTATGAAAAACGGAAAGACCAACAATACCAGCAATTCCGATGGTGCTCCGATTGGAGCTGCACCAGTAGCTGACCCAAAAGTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTTGAAAACGGTATATGAAAG</pcr_primer_p1>
		<pcr_primer_p2>ATAACCAAATCGATAACATTGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTTGAAAACGGTATATGAAAGCCACGCGCTAATTCATACCGTAACTCCAAAAAAAATTTATGAAAATCTCCAGGACTTTCAACCAACCCATTTTCCAGCCGCCTGATTATGTTCATCATTGCCATCCTCTACACCAACACCAAGTACCTCATTTTCCTCCGCATTTTACCAAATTTCATCCAATTCAACTTCACTTCTTTCGTCAGCCTTCACAGATGCCTTGCGGTCAATGTTATCGATTTGGTTAT</canonical_amplicon>
		<polymorphic_amplicon>CTCTTGAAAACGGTATATGAAAGCCACGCGCTAATTCATACCGTAACTCCAAAAAAAATTTATGAAAATCTCCAGGACTTTCAACCAACCCATTTTCCAGCCGCCTGATTATGTTCATCATTGCCATCCTCTACACCAACACCAAGTACCTCATTTTCCTCCGCATTTTACCAAATTTCATYCAATTCAACTTCACTTCTTTCGTCAGCCTTCACAGATGCCTTGCGGTCAATGTTATCGATTTGGTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26720</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>417225</contig_pos>
        <strand></strand>
        <context>gacggagcac[C/A]agcywgctga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCAC</left_flank>
        <right_flank>AGCTAGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCGAGTCGACTTGAAAATCGACGATTTTTGTCGACTTTGAAAATCGACAGAATCGACATTCAACGATTCGACAAGGCTTTTTGTAGATAAAAATCGATAAAAATCGAAAAACCGCTCTCCAGGTGACTTATTAGGCTGTTGCGAACCCTACAGTTCTAGGGGTCGTATCTTCTGATATTGGCCCACTTGGTCACAAGACATTAAGCTTAAATATAAGATACGTATAATTTGACGTGACCTTTTGAGAACGTGAGGAGCTTAACGACGAACGAATAAAAACTAGGTTGAATCGCGCCAAAGGCGCACCAGTCAGATGTTTGAAGTGCCCGAGGCGCGGCAAACAGGCTGGTATATTAAAGTAAAATCTACGCACGTCTGTTGGTCCTGGTGTCCCGATGTGAACTTTTGAAAAGCTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCTAGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGATCCCCTTGATGAATTATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTTCCGAGTGGT</canonical>
            <polymorphic>GCCGAGTCGACTTGAAAATCGACGATTTTTGTCGACTTTGAAAATCGACAGAATCGACATTCAACGATTCGACAAGGCTTTTTGTAGATAAAAATCGATAAAAATCGAAAAACCGCTCTCCAGGTGACTTATTAGGCTGTTGCGAACCCTACAGTTCTAGGGGTCGTATCTTCTGATATTGGCCCACTTGGTCACAAGACATTAAGCTTAAATATAAGATACGTATAATTTGACGTGACCTTTTGAGAACGTGAGGAGCTTAACGACGAACGAATAAAAACTAGGTTGAATCGCGCCAAAGGCGCACCAGTCAGATGTTTGAAGTGCCCGAGGCGCGGCAAACAGGCTGGTATATTAAAGTAAAATCTACGCACGTCTGTTGGTCCTGGTGTCCCGATGTGAACTTTTGAAAAGCTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACMAGCTAGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGATCCCCTTGATGAATTATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTTCCGAGTGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACTTGGTCACAAGACATT</pcr_primer_p1>
		<pcr_primer_p2>AAGGGGATCTGAAGAGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>378</pcr_amplicon_size>
		<canonical_amplicon>CCACTTGGTCACAAGACATTAAGCTTAAATATAAGATACGTATAATTTGACGTGACCTTTTGAGAACGTGAGGAGCTTAACGACGAACGAATAAAAACTAGGTTGAATCGCGCCAAAGGCGCACCAGTCAGATGTTTGAAGTGCCCGAGGCGCGGCAAACAGGCTGGTATATTAAAGTAAAATCTACGCACGTCTGTTGGTCCTGGTGTCCCGATGTGAACTTTTGAAAAGCTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCTAGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGATCCCCTT</canonical_amplicon>
		<polymorphic_amplicon>CCACTTGGTCACAAGACATTAAGCTTAAATATAAGATACGTATAATTTGACGTGACCTTTTGAGAACGTGAGGAGCTTAACGACGAACGAATAAAAACTAGGTTGAATCGCGCCAAAGGCGCACCAGTCAGATGTTTGAAGTGCCCGAGGCGCGGCAAACAGGCTGGTATATTAAAGTAAAATCTACGCACGTCTGTTGGTCCTGGTGTCCCGATGTGAACTTTTGAAAAGCTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACMAGCTAGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGATCCCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26721</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>417229</contig_pos>
        <strand>+</strand>
        <context>gagcacmagc[C/T]wgctgatGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGC</left_flank>
        <right_flank>AGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTCGACTTGAAAATCGACGATTTTTGTCGACTTTGAAAATCGACAGAATCGACATTCAACGATTCGACAAGGCTTTTTGTAGATAAAAATCGATAAAAATCGAAAAACCGCTCTCCAGGTGACTTATTAGGCTGTTGCGAACCCTACAGTTCTAGGGGTCGTATCTTCTGATATTGGCCCACTTGGTCACAAGACATTAAGCTTAAATATAAGATACGTATAATTTGACGTGACCTTTTGAGAACGTGAGGAGCTTAACGACGAACGAATAAAAACTAGGTTGAATCGCGCCAAAGGCGCACCAGTCAGATGTTTGAAGTGCCCGAGGCGCGGCAAACAGGCTGGTATATTAAAGTAAAATCTACGCACGTCTGTTGGTCCTGGTGTCCCGATGTGAACTTTTGAAAAGCTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCTAGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGATCCCCTTGATGAATTATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTTCCGAGTGGTTCCG</canonical>
            <polymorphic>AGTCGACTTGAAAATCGACGATTTTTGTCGACTTTGAAAATCGACAGAATCGACATTCAACGATTCGACAAGGCTTTTTGTAGATAAAAATCGATAAAAATCGAAAAACCGCTCTCCAGGTGACTTATTAGGCTGTTGCGAACCCTACAGTTCTAGGGGTCGTATCTTCTGATATTGGCCCACTTGGTCACAAGACATTAAGCTTAAATATAAGATACGTATAATTTGACGTGACCTTTTGAGAACGTGAGGAGCTTAACGACGAACGAATAAAAACTAGGTTGAATCGCGCCAAAGGCGCACCAGTCAGATGTTTGAAGTGCCCGAGGCGCGGCAAACAGGCTGGTATATTAAAGTAAAATCTACGCACGTCTGTTGGTCCTGGTGTCCCGATGTGAACTTTTGAAAAGCTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCYAGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGATCCCCTTGATGAATTATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTTCCGAGTGGTTCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>340 202 156 113 88 52 45 4</canonical_bands>
                <polymorphic_bands>340 202 156 113 92 52 45</polymorphic_bands>
            </assay>
            <assay>
                <site>GCTAGC</site>
                <isoschizomers>
                    <enzyme>AsuNHI</enzyme>
                    <enzyme>BmtI</enzyme>
                    <enzyme>NheI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 192 153 124 30</canonical_bands>
                <polymorphic_bands>531 192 153 124</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>206 134 97 88 88 73 68 59 52 46 45 24 16 4</canonical_bands>
                <polymorphic_bands>206 134 97 92 88 73 68 59 52 46 45 24 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACTTGGTCACAAGACATT</pcr_primer_p1>
		<pcr_primer_p2>AAGGGGATCTGAAGAGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>378</pcr_amplicon_size>
		<canonical_amplicon>CCACTTGGTCACAAGACATTAAGCTTAAATATAAGATACGTATAATTTGACGTGACCTTTTGAGAACGTGAGGAGCTTAACGACGAACGAATAAAAACTAGGTTGAATCGCGCCAAAGGCGCACCAGTCAGATGTTTGAAGTGCCCGAGGCGCGGCAAACAGGCTGGTATATTAAAGTAAAATCTACGCACGTCTGTTGGTCCTGGTGTCCCGATGTGAACTTTTGAAAAGCTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCTAGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGATCCCCTT</canonical_amplicon>
		<polymorphic_amplicon>CCACTTGGTCACAAGACATTAAGCTTAAATATAAGATACGTATAATTTGACGTGACCTTTTGAGAACGTGAGGAGCTTAACGACGAACGAATAAAAACTAGGTTGAATCGCGCCAAAGGCGCACCAGTCAGATGTTTGAAGTGCCCGAGGCGCGGCAAACAGGCTGGTATATTAAAGTAAAATCTACGCACGTCTGTTGGTCCTGGTGTCCCGATGTGAACTTTTGAAAAGCTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCYAGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGATCCCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26722</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>417230</contig_pos>
        <strand></strand>
        <context>agcacmagcy[A/T]gctgatGAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCT</left_flank>
        <right_flank>GCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGAT</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCGACTTGAAAATCGACGATTTTTGTCGACTTTGAAAATCGACAGAATCGACATTCAACGATTCGACAAGGCTTTTTGTAGATAAAAATCGATAAAAATCGAAAAACCGCTCTCCAGGTGACTTATTAGGCTGTTGCGAACCCTACAGTTCTAGGGGTCGTATCTTCTGATATTGGCCCACTTGGTCACAAGACATTAAGCTTAAATATAAGATACGTATAATTTGACGTGACCTTTTGAGAACGTGAGGAGCTTAACGACGAACGAATAAAAACTAGGTTGAATCGCGCCAAAGGCGCACCAGTCAGATGTTTGAAGTGCCCGAGGCGCGGCAAACAGGCTGGTATATTAAAGTAAAATCTACGCACGTCTGTTGGTCCTGGTGTCCCGATGTGAACTTTTGAAAAGCTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCTAGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGATCCCCTTGATGAATTATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTTCCGAGTGGTTCCGA</canonical>
            <polymorphic>GTCGACTTGAAAATCGACGATTTTTGTCGACTTTGAAAATCGACAGAATCGACATTCAACGATTCGACAAGGCTTTTTGTAGATAAAAATCGATAAAAATCGAAAAACCGCTCTCCAGGTGACTTATTAGGCTGTTGCGAACCCTACAGTTCTAGGGGTCGTATCTTCTGATATTGGCCCACTTGGTCACAAGACATTAAGCTTAAATATAAGATACGTATAATTTGACGTGACCTTTTGAGAACGTGAGGAGCTTAACGACGAACGAATAAAAACTAGGTTGAATCGCGCCAAAGGCGCACCAGTCAGATGTTTGAAGTGCCCGAGGCGCGGCAAACAGGCTGGTATATTAAAGTAAAATCTACGCACGTCTGTTGGTCCTGGTGTCCCGATGTGAACTTTTGAAAAGCTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCTWGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGATCCCCTTGATGAATTATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTTCCGAGTGGTTCCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>340 201 156 113 88 52 46 4</canonical_bands>
                <polymorphic_bands>344 201 156 113 88 52 46</polymorphic_bands>
            </assay>
            <assay>
                <site>GCTAGC</site>
                <isoschizomers>
                    <enzyme>AsuNHI</enzyme>
                    <enzyme>BmtI</enzyme>
                    <enzyme>NheI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 192 152 124 30</canonical_bands>
                <polymorphic_bands>532 192 152 124</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>206 134 97 88 88 72 68 59 52 46 46 24 16 4</canonical_bands>
                <polymorphic_bands>210 134 97 88 88 72 68 59 52 46 46 24 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACTTGGTCACAAGACATT</pcr_primer_p1>
		<pcr_primer_p2>AAGGGGATCTGAAGAGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>378</pcr_amplicon_size>
		<canonical_amplicon>CCACTTGGTCACAAGACATTAAGCTTAAATATAAGATACGTATAATTTGACGTGACCTTTTGAGAACGTGAGGAGCTTAACGACGAACGAATAAAAACTAGGTTGAATCGCGCCAAAGGCGCACCAGTCAGATGTTTGAAGTGCCCGAGGCGCGGCAAACAGGCTGGTATATTAAAGTAAAATCTACGCACGTCTGTTGGTCCTGGTGTCCCGATGTGAACTTTTGAAAAGCTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCTAGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGATCCCCTT</canonical_amplicon>
		<polymorphic_amplicon>CCACTTGGTCACAAGACATTAAGCTTAAATATAAGATACGTATAATTTGACGTGACCTTTTGAGAACGTGAGGAGCTTAACGACGAACGAATAAAAACTAGGTTGAATCGCGCCAAAGGCGCACCAGTCAGATGTTTGAAGTGCCCGAGGCGCGGCAAACAGGCTGGTATATTAAAGTAAAATCTACGCACGTCTGTTGGTCCTGGTGTCCCGATGTGAACTTTTGAAAAGCTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCTWGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGATCCCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26723</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>417446</contig_pos>
        <strand>+</strand>
        <context>GGCTCCTCGG[C/T]TTACTYTGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGG</left_flank>
        <right_flank>TTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTATAATTTGACGTGACCTTTTGAGAACGTGAGGAGCTTAACGACGAACGAATAAAAACTAGGTTGAATCGCGCCAAAGGCGCACCAGTCAGATGTTTGAAGTGCCCGAGGCGCGGCAAACAGGCTGGTATATTAAAGTAAAATCTACGCACGTCTGTTGGTCCTGGTGTCCCGATGTGAACTTTTGAAAAGCTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCTAGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGATCCCCTTGATGAATTATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTTCCGAGTGGTTCCGACATTTTGTGCCTGTGTGAGTTGTTACAGAAAGTTGTACCATATAGAAGTTGATTTTGCAGTCCGGCGACTTTGAAACCCAAAATGCTCGTCGGGACGGCGGCAAGTCGACGTTTGGCACCAAATATTTTGATGATGAAAATTTTGAGATTCTACACGATAAGAAGTAAAACACATATTTGAATTAAGCCTATGAGGCAAACTTTCAGAGGCATCCT</canonical>
            <polymorphic>CGTATAATTTGACGTGACCTTTTGAGAACGTGAGGAGCTTAACGACGAACGAATAAAAACTAGGTTGAATCGCGCCAAAGGCGCACCAGTCAGATGTTTGAAGTGCCCGAGGCGCGGCAAACAGGCTGGTATATTAAAGTAAAATCTACGCACGTCTGTTGGTCCTGGTGTCCCGATGTGAACTTTTGAAAAGCTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCTAGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGATCCCCTTGATGAATTATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGYTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTTCCGAGTGGTTCCGACATTTTGTGCCTGTGTGAGTTGTTACAGAAAGTTGTACCATATAGAAGTTGATTTTGCAGTCCGGCGACTTTGAAACCCAAAATGCTCGTCGGGACGGCGGCAAGTCGACGTTTGGCACCAAATATTTTGATGATGAAAATTTTGAGATTCTACACGATAAGAAGTAAAACACATATTTGAATTAAGCCTATGAGGCAAACTTTCAGAGGCATCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>390 321 180 109</canonical_bands>
                <polymorphic_bands>711 180 109</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTCCTCTTTTTCCAACAATTT</pcr_primer_p1>
		<pcr_primer_p2>CGTGATATCCATGAACACTTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACG</canonical_amplicon>
		<polymorphic_amplicon>TATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGYTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26724</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>417612</contig_pos>
        <strand></strand>
        <context>TTCAAATCTC[G/T]TTGAATTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTC</left_flank>
        <right_flank>TTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGTCCCGATGTGAACTTTTGAAAAGCTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCTAGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGATCCCCTTGATGAATTATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTTCCGAGTGGTTCCGACATTTTGTGCCTGTGTGAGTTGTTACAGAAAGTTGTACCATATAGAAGTTGATTTTGCAGTCCGGCGACTTTGAAACCCAAAATGCTCGTCGGGACGGCGGCAAGTCGACGTTTGGCACCAAATATTTTGATGATGAAAATTTTGAGATTCTACACGATAAGAAGTAAAACACATATTTGAATTAAGCCTATGAGGCAAACTTTCAGAGGCATCCTTGCAATGGACAACTACGGTTGGGAGAACACCAACTCTTCGCGGTTCTATGTGACATTCCGCGAGACGCCATGGATGAACAACTTCCACGTGGCATTTGGAGAATTGGTTGAAGGATTCGATGTGTTGGATGCCATCGAACAGCTCGGCCTCCTAGAAGGAAATGGA</canonical>
            <polymorphic>GGTGTCCCGATGTGAACTTTTGAAAAGCTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCTAGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGATCCCCTTGATGAATTATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCKTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTTCCGAGTGGTTCCGACATTTTGTGCCTGTGTGAGTTGTTACAGAAAGTTGTACCATATAGAAGTTGATTTTGCAGTCCGGCGACTTTGAAACCCAAAATGCTCGTCGGGACGGCGGCAAGTCGACGTTTGGCACCAAATATTTTGATGATGAAAATTTTGAGATTCTACACGATAAGAAGTAAAACACATATTTGAATTAAGCCTATGAGGCAAACTTTCAGAGGCATCCTTGCAATGGACAACTACGGTTGGGAGAACACCAACTCTTCGCGGTTCTATGTGACATTCCGCGAGACGCCATGGATGAACAACTTCCACGTGGCATTTGGAGAATTGGTTGAAGGATTCGATGTGTTGGATGCCATCGAACAGCTCGGCCTCCTAGAAGGAAATGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCTTTCATTCGTTCTATTATT</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGACGCAATTCTTGTATC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCKTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26725</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>417639</contig_pos>
        <strand></strand>
        <context>ACACCGAAAA[G/A]TGTCCCAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAA</left_flank>
        <right_flank>TGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGG</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCTAGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGATCCCCTTGATGAATTATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTTCCGAGTGGTTCCGACATTTTGTGCCTGTGTGAGTTGTTACAGAAAGTTGTACCATATAGAAGTTGATTTTGCAGTCCGGCGACTTTGAAACCCAAAATGCTCGTCGGGACGGCGGCAAGTCGACGTTTGGCACCAAATATTTTGATGATGAAAATTTTGAGATTCTACACGATAAGAAGTAAAACACATATTTGAATTAAGCCTATGAGGCAAACTTTCAGAGGCATCCTTGCAATGGACAACTACGGTTGGGAGAACACCAACTCTTCGCGGTTCTATGTGACATTCCGCGAGACGCCATGGATGAACAACTTCCACGTGGCATTTGGAGAATTGGTTGAAGGATTCGATGTGTTGGATGCCATCGAACAGCTCGGCCTCCTAGAAGGAAATGGACCACAGAAGGGGAGAACCAAGGCGAAG</canonical>
            <polymorphic>CTTGAAAAGAAATATAGATTTACGAATAATTGAGGAGTGGAGCGACGAACCAGTAAAACTAGGTTAAATCGCACCGACGGAGCACCAGCTAGCTGATGAAGTTATATAATTCGATCTTTGAACTCTTAAAACTCTTCAGATCCCCTTGATGAATTATTCCTCTTTTTCCAACAATTTTTGGGGTCAAAACAAATTTACTCTCAATTTCCAAACACAACTAATTTGTAATACTATTAACGTCTTCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAARTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTTCCGAGTGGTTCCGACATTTTGTGCCTGTGTGAGTTGTTACAGAAAGTTGTACCATATAGAAGTTGATTTTGCAGTCCGGCGACTTTGAAACCCAAAATGCTCGTCGGGACGGCGGCAAGTCGACGTTTGGCACCAAATATTTTGATGATGAAAATTTTGAGATTCTACACGATAAGAAGTAAAACACATATTTGAATTAAGCCTATGAGGCAAACTTTCAGAGGCATCCTTGCAATGGACAACTACGGTTGGGAGAACACCAACTCTTCGCGGTTCTATGTGACATTCCGCGAGACGCCATGGATGAACAACTTCCACGTGGCATTTGGAGAATTGGTTGAAGGATTCGATGTGTTGGATGCCATCGAACAGCTCGGCCTCCTAGAAGGAAATGGACCACAGAAGGGGAGAACCAAGGCGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>130 104 101 86 73 45 41 41 39 37 35 35 34 34 33 24 23 17 16 13 11 10 6 6 4 2</canonical_bands>
                <polymorphic_bands>130 104 101 86 73 45 45 41 41 39 37 35 34 34 33 24 23 17 16 13 11 6 6 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCCTTTCATTCGTTCTATTATT</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGACGCAATTCTTGTATC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAARTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26726</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>417881</contig_pos>
        <strand></strand>
        <context>TTTTGAGATT[C/T]TACACGATAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCAAGTCGACGTTTGGCACCAAATATTTTGATGATGAAAATTTTGAGATT</left_flank>
        <right_flank>TACACGATAAGAAGTAAAACACATATTTGAATTAAGCCTATGAGGCAAAC</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTTCCGAGTGGTTCCGACATTTTGTGCCTGTGTGAGTTGTTACAGAAAGTTGTACCATATAGAAGTTGATTTTGCAGTCCGGCGACTTTGAAACCCAAAATGCTCGTCGGGACGGCGGCAAGTCGACGTTTGGCACCAAATATTTTGATGATGAAAATTTTGAGATTCTACACGATAAGAAGTAAAACACATATTTGAATTAAGCCTATGAGGCAAACTTTCAGAGGCATCCTTGCAATGGACAACTACGGTTGGGAGAACACCAACTCTTCGCGGTTCTATGTGACATTCCGCGAGACGCCATGGATGAACAACTTCCACGTGGCATTTGGAGAATTGGTTGAAGGATTCGATGTGTTGGATGCCATCGAACAGCTCGGCCTCCTAGAAGGAAATGGACCACAGAAGGGGAGAACCAAGGCGAAGATTGTGATTTCTGATTGTGGAATGTATGAGAAGTAACGTTCCTAACTCTTTGATAAAAGTTTCAAACTGATTTTTGTTTTCTAAATTTTAAAAGTATTGAGTAAATAGCAAGCTGGTGCGCCTTCGGCGCGATTCAATCTATTTTTTTCAAATGTTTGTCGCTTCGTTTCTCACTTTTTCTAAATAAAAGGGTCACGTAATTATATATTTATTTTTCAATTTTTTCAAAAGTCCACAGACGG</canonical>
            <polymorphic>TCTATTGTATGTGTCCCTTCCAAAACGACAGAATTTGAACTAATTATGGTTCTCGGCTCCTCGGTTTACTCTGCTCCGCCCATATTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTTCCGAGTGGTTCCGACATTTTGTGCCTGTGTGAGTTGTTACAGAAAGTTGTACCATATAGAAGTTGATTTTGCAGTCCGGCGACTTTGAAACCCAAAATGCTCGTCGGGACGGCGGCAAGTCGACGTTTGGCACCAAATATTTTGATGATGAAAATTTTGAGATTYTACACGATAAGAAGTAAAACACATATTTGAATTAAGCCTATGAGGCAAACTTTCAGAGGCATCCTTGCAATGGACAACTACGGTTGGGAGAACACCAACTCTTCGCGGTTCTATGTGACATTCCGCGAGACGCCATGGATGAACAACTTCCACGTGGCATTTGGAGAATTGGTTGAAGGATTCGATGTGTTGGATGCCATCGAACAGCTCGGCCTCCTAGAAGGAAATGGACCACAGAAGGGGAGAACCAAGGCGAAGATTGTGATTTCTGATTGTGGAATGTATGAGAAGTAACGTTCCTAACTCTTTGATAAAAGTTTCAAACTGATTTTTGTTTTCTAAATTTTAAAAGTATTGAGTAAATAGCAAGCTGGTGCGCCTTCGGCGCGATTCAATCTATTTTTTTCAAATGTTTGTCGCTTCGTTTCTCACTTTTTCTAAATAAAAGGGTCACGTAATTATATATTTATTTTTCAATTTTTTCAAAAGTCCACAGACGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>210 210 188 183 111 98</canonical_bands>
                <polymorphic_bands>371 210 210 111 98</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>210 210 188 183 111 98</canonical_bands>
                <polymorphic_bands>371 210 210 111 98</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATACAAGAATTGCGTCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTCTGAAAGTTTGCCTCATAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GATACAAGAATTGCGTCTTTTTCCGAGTGGTTCCGACATTTTGTGCCTGTGTGAGTTGTTACAGAAAGTTGTACCATATAGAAGTTGATTTTGCAGTCCGGCGACTTTGAAACCCAAAATGCTCGTCGGGACGGCGGCAAGTCGACGTTTGGCACCAAATATTTTGATGATGAAAATTTTGAGATTCTACACGATAAGAAGTAAAACACATATTTGAATTAAGCCTATGAGGCAAACTTTCAGAG</canonical_amplicon>
		<polymorphic_amplicon>GATACAAGAATTGCGTCTTTTTCCGAGTGGTTCCGACATTTTGTGCCTGTGTGAGTTGTTACAGAAAGTTGTACCATATAGAAGTTGATTTTGCAGTCCGGCGACTTTGAAACCCAAAATGCTCGTCGGGACGGCGGCAAGTCGACGTTTGGCACCAAATATTTTGATGATGAAAATTTTGAGATTYTACACGATAAGAAGTAAAACACATATTTGAATTAAGCCTATGAGGCAAACTTTCAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26727</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>417965</contig_pos>
        <strand>+</strand>
        <context>ACAACTACGG[C/T]TGGGAGAACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGCCTATGAGGCAAACTTTCAGAGGCATCCTTGCAATGGACAACTACGG</left_flank>
        <right_flank>TGGGAGAACACCAACTCTTCGCGGTTCTATGTGACATTCCGCGAGACGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTTCCGAGTGGTTCCGACATTTTGTGCCTGTGTGAGTTGTTACAGAAAGTTGTACCATATAGAAGTTGATTTTGCAGTCCGGCGACTTTGAAACCCAAAATGCTCGTCGGGACGGCGGCAAGTCGACGTTTGGCACCAAATATTTTGATGATGAAAATTTTGAGATTCTACACGATAAGAAGTAAAACACATATTTGAATTAAGCCTATGAGGCAAACTTTCAGAGGCATCCTTGCAATGGACAACTACGGTTGGGAGAACACCAACTCTTCGCGGTTCTATGTGACATTCCGCGAGACGCCATGGATGAACAACTTCCACGTGGCATTTGGAGAATTGGTTGAAGGATTCGATGTGTTGGATGCCATCGAACAGCTCGGCCTCCTAGAAGGAAATGGACCACAGAAGGGGAGAACCAAGGCGAAGATTGTGATTTCTGATTGTGGAATGTATGAGAAGTAACGTTCCTAACTCTTTGATAAAAGTTTCAAACTGATTTTTGTTTTCTAAATTTTAAAAGTATTGAGTAAATAGCAAGCTGGTGCGCCTTCGGCGCGATTCAATCTATTTTTTTCAAATGTTTGTCGCTTCGTTTCTCACTTTTTCTAAATAAAAGGGTCACGTAATTATATATTTATTTTTCAATTTTTTCAAAAGTCCACAGACGGACACGAGGACGGACAGACGCCTTTAGCGTTTTATTAATAAGGAAGATGATAAGAAGTTCGGAAGAAGAATACAAAAAGAAATGG</canonical>
            <polymorphic>TTCCTTTCATTCGTTCTATTATTCATTTTTGTGCAGTAACAATCCCAAAATCATGTTCAAAAAAGTGTTCATGGATATCACGGCGGATGGAGCGCCTCTCGGGAAGCTGGTTTTTCAGGTAGCCCGATTCATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTTCCGAGTGGTTCCGACATTTTGTGCCTGTGTGAGTTGTTACAGAAAGTTGTACCATATAGAAGTTGATTTTGCAGTCCGGCGACTTTGAAACCCAAAATGCTCGTCGGGACGGCGGCAAGTCGACGTTTGGCACCAAATATTTTGATGATGAAAATTTTGAGATTCTACACGATAAGAAGTAAAACACATATTTGAATTAAGCCTATGAGGCAAACTTTCAGAGGCATCCTTGCAATGGACAACTACGGYTGGGAGAACACCAACTCTTCGCGGTTCTATGTGACATTCCGCGAGACGCCATGGATGAACAACTTCCACGTGGCATTTGGAGAATTGGTTGAAGGATTCGATGTGTTGGATGCCATCGAACAGCTCGGCCTCCTAGAAGGAAATGGACCACAGAAGGGGAGAACCAAGGCGAAGATTGTGATTTCTGATTGTGGAATGTATGAGAAGTAACGTTCCTAACTCTTTGATAAAAGTTTCAAACTGATTTTTGTTTTCTAAATTTTAAAAGTATTGAGTAAATAGCAAGCTGGTGCGCCTTCGGCGCGATTCAATCTATTTTTTTCAAATGTTTGTCGCTTCGTTTCTCACTTTTTCTAAATAAAAGGGTCACGTAATTATATATTTATTTTTCAATTTTTTCAAAAGTCCACAGACGGACACGAGGACGGACAGACGCCTTTAGCGTTTTATTAATAAGGAAGATGATAAGAAGTTCGGAAGAAGAATACAAAAAGAAATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTAAGCCTATGAGGCAAAC</pcr_primer_p1>
		<pcr_primer_p2>TCCACAATCAGAAATCACAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTAAGCCTATGAGGCAAACTTTCAGAGGCATCCTTGCAATGGACAACTACGGTTGGGAGAACACCAACTCTTCGCGGTTCTATGTGACATTCCGCGAGACGCCATGGATGAACAACTTCCACGTGGCATTTGGAGAATTGGTTGAAGGATTCGATGTGTTGGATGCCATCGAACAGCTCGGCCTCCTAGAAGGAAATGGACCACAGAAGGGGAGAACCAAGGCGAAGATTGTGATTTCTGATTGTGGA</canonical_amplicon>
		<polymorphic_amplicon>AATTAAGCCTATGAGGCAAACTTTCAGAGGCATCCTTGCAATGGACAACTACGGYTGGGAGAACACCAACTCTTCGCGGTTCTATGTGACATTCCGCGAGACGCCATGGATGAACAACTTCCACGTGGCATTTGGAGAATTGGTTGAAGGATTCGATGTGTTGGATGCCATCGAACAGCTCGGCCTCCTAGAAGGAAATGGACCACAGAAGGGGAGAACCAAGGCGAAGATTGTGATTTCTGATTGTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26728</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>418095</contig_pos>
        <strand>+</strand>
        <context>ACAGCTCGGC[A/C]TCCTAGAAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAGAATTGGTTGAAGGATTCGATGTGTTGGATGCCATCGAACAGCTCGGC</left_flank>
        <right_flank>TCCTAGAAGGAAATGGACCACAGAAGGGGAGAACCAAGGCGAAGATTGTG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTTCCGAGTGGTTCCGACATTTTGTGCCTGTGTGAGTTGTTACAGAAAGTTGTACCATATAGAAGTTGATTTTGCAGTCCGGCGACTTTGAAACCCAAAATGCTCGTCGGGACGGCGGCAAGTCGACGTTTGGCACCAAATATTTTGATGATGAAAATTTTGAGATTCTACACGATAAGAAGTAAAACACATATTTGAATTAAGCCTATGAGGCAAACTTTCAGAGGCATCCTTGCAATGGACAACTACGGTTGGGAGAACACCAACTCTTCGCGGTTCTATGTGACATTCCGCGAGACGCCATGGATGAACAACTTCCACGTGGCATTTGGAGAATTGGTTGAAGGATTCGATGTGTTGGATGCCATCGAACAGCTCGGCCTCCTAGAAGGAAATGGACCACAGAAGGGGAGAACCAAGGCGAAGATTGTGATTTCTGATTGTGGAATGTATGAGAAGTAACGTTCCTAACTCTTTGATAAAAGTTTCAAACTGATTTTTGTTTTCTAAATTTTAAAAGTATTGAGTAAATAGCAAGCTGGTGCGCCTTCGGCGCGATTCAATCTATTTTTTTCAAATGTTTGTCGCTTCGTTTCTCACTTTTTCTAAATAAAAGGGTCACGTAATTATATATTTATTTTTCAATTTTTTCAAAAGTCCACAGACGGACACGAGGACGGACAGACGCCTTTAGCGTTTTATTAATAAGGAAGATGATAAGAAGTTCGGAAGAAGAATACAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACGTTTATTTTCATTTTGGATAGAAACACATGAAAAGCCGTGAAACAGGAAAATCCGATC</canonical>
            <polymorphic>ATTGATTTCAAATCTCGTTGAATTTTTAGTTGAACACCGAAAAGTGTCCCAAAACTTGCGATAACTTTCTGAAACTCTGCACTGGTGAGCTGGGATTCGGATACAAGAATTGCGTCTTTTTCCGAGTGGTTCCGACATTTTGTGCCTGTGTGAGTTGTTACAGAAAGTTGTACCATATAGAAGTTGATTTTGCAGTCCGGCGACTTTGAAACCCAAAATGCTCGTCGGGACGGCGGCAAGTCGACGTTTGGCACCAAATATTTTGATGATGAAAATTTTGAGATTCTACACGATAAGAAGTAAAACACATATTTGAATTAAGCCTATGAGGCAAACTTTCAGAGGCATCCTTGCAATGGACAACTACGGTTGGGAGAACACCAACTCTTCGCGGTTCTATGTGACATTCCGCGAGACGCCATGGATGAACAACTTCCACGTGGCATTTGGAGAATTGGTTGAAGGATTCGATGTGTTGGATGCCATCGAACAGCTCGGCMTCCTAGAAGGAAATGGACCACAGAAGGGGAGAACCAAGGCGAAGATTGTGATTTCTGATTGTGGAATGTATGAGAAGTAACGTTCCTAACTCTTTGATAAAAGTTTCAAACTGATTTTTGTTTTCTAAATTTTAAAAGTATTGAGTAAATAGCAAGCTGGTGCGCCTTCGGCGCGATTCAATCTATTTTTTTCAAATGTTTGTCGCTTCGTTTCTCACTTTTTCTAAATAAAAGGGTCACGTAATTATATATTTATTTTTCAATTTTTTCAAAAGTCCACAGACGGACACGAGGACGGACAGACGCCTTTAGCGTTTTATTAATAAGGAAGATGATAAGAAGTTCGGAAGAAGAATACAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACGTTTATTTTCATTTTGGATAGAAACACATGAAAAGCCGTGAAACAGGAAAATCCGATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>498 373 67 62</canonical_bands>
                <polymorphic_bands>871 67 62</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>233 215 171 158 89 67 39 23 5</canonical_bands>
                <polymorphic_bands>233 215 171 163 89 67 39 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATGAGGCAAACTTTCAGAG</pcr_primer_p1>
		<pcr_primer_p2>TCATACATTCCACAATCAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATGAGGCAAACTTTCAGAGGCATCCTTGCAATGGACAACTACGGTTGGGAGAACACCAACTCTTCGCGGTTCTATGTGACATTCCGCGAGACGCCATGGATGAACAACTTCCACGTGGCATTTGGAGAATTGGTTGAAGGATTCGATGTGTTGGATGCCATCGAACAGCTCGGCCTCCTAGAAGGAAATGGACCACAGAAGGGGAGAACCAAGGCGAAGATTGTGATTTCTGATTGTGGAATGTATGA</canonical_amplicon>
		<polymorphic_amplicon>CTATGAGGCAAACTTTCAGAGGCATCCTTGCAATGGACAACTACGGTTGGGAGAACACCAACTCTTCGCGGTTCTATGTGACATTCCGCGAGACGCCATGGATGAACAACTTCCACGTGGCATTTGGAGAATTGGTTGAAGGATTCGATGTGTTGGATGCCATCGAACAGCTCGGCMTCCTAGAAGGAAATGGACCACAGAAGGGGAGAACCAAGGCGAAGATTGTGATTTCTGATTGTGGAATGTATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26729</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>418238</contig_pos>
        <strand>+</strand>
        <context>TAAAAGTATT[G/T]AGTAAATagc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTGATAAAAGTTTCAAACTGATTTTTGTTTTCTAAATTTTAAAAGTATT</left_flank>
        <right_flank>AGTAAATAGCAAGCTGGTGCGCCTTCGGCGCGATTCAATCTATTTTTTTC</right_flank>
        <qual_score>134</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCTGTGTGAGTTGTTACAGAAAGTTGTACCATATAGAAGTTGATTTTGCAGTCCGGCGACTTTGAAACCCAAAATGCTCGTCGGGACGGCGGCAAGTCGACGTTTGGCACCAAATATTTTGATGATGAAAATTTTGAGATTCTACACGATAAGAAGTAAAACACATATTTGAATTAAGCCTATGAGGCAAACTTTCAGAGGCATCCTTGCAATGGACAACTACGGTTGGGAGAACACCAACTCTTCGCGGTTCTATGTGACATTCCGCGAGACGCCATGGATGAACAACTTCCACGTGGCATTTGGAGAATTGGTTGAAGGATTCGATGTGTTGGATGCCATCGAACAGCTCGGCCTCCTAGAAGGAAATGGACCACAGAAGGGGAGAACCAAGGCGAAGATTGTGATTTCTGATTGTGGAATGTATGAGAAGTAACGTTCCTAACTCTTTGATAAAAGTTTCAAACTGATTTTTGTTTTCTAAATTTTAAAAGTATTGAGTAAATAGCAAGCTGGTGCGCCTTCGGCGCGATTCAATCTATTTTTTTCAAATGTTTGTCGCTTCGTTTCTCACTTTTTCTAAATAAAAGGGTCACGTAATTATATATTTATTTTTCAATTTTTTCAAAAGTCCACAGACGGACACGAGGACGGACAGACGCCTTTAGCGTTTTATTAATAAGGAAGATGATAAGAAGTTCGGAAGAAGAATACAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACGTTTATTTTCATTTTGGATAGAAACACATGAAAAGCCGTGAAACAGGAAAATCCGATCTTATCATTGGATGGAATCTATCACTTCCTTGTTTCATCTTGCTTTCACGTCAGCCTGTATTCGACTATCTATTTCACATCGAAAAGAAAGAAACATTGTGGCCGAACGGTCTAGTGGTATTCTCGCTTTGGGTGCGAGAGGTC</canonical>
            <polymorphic>GCCTGTGTGAGTTGTTACAGAAAGTTGTACCATATAGAAGTTGATTTTGCAGTCCGGCGACTTTGAAACCCAAAATGCTCGTCGGGACGGCGGCAAGTCGACGTTTGGCACCAAATATTTTGATGATGAAAATTTTGAGATTCTACACGATAAGAAGTAAAACACATATTTGAATTAAGCCTATGAGGCAAACTTTCAGAGGCATCCTTGCAATGGACAACTACGGTTGGGAGAACACCAACTCTTCGCGGTTCTATGTGACATTCCGCGAGACGCCATGGATGAACAACTTCCACGTGGCATTTGGAGAATTGGTTGAAGGATTCGATGTGTTGGATGCCATCGAACAGCTCGGCCTCCTAGAAGGAAATGGACCACAGAAGGGGAGAACCAAGGCGAAGATTGTGATTTCTGATTGTGGAATGTATGAGAAGTAACGTTCCTAACTCTTTGATAAAAGTTTCAAACTGATTTTTGTTTTCTAAATTTTAAAAGTATTKAGTAAATAGCAAGCTGGTGCGCCTTCGGCGCGATTCAATCTATTTTTTTCAAATGTTTGTCGCTTCGTTTCTCACTTTTTCTAAATAAAAGGGTCACGTAATTATATATTTATTTTTCAATTTTTTCAAAAGTCCACAGACGGACACGAGGACGGACAGACGCCTTTAGCGTTTTATTAATAAGGAAGATGATAAGAAGTTCGGAAGAAGAATACAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACGTTTATTTTCATTTTGGATAGAAACACATGAAAAGCCGTGAAACAGGAAAATCCGATCTTATCATTGGATGGAATCTATCACTTCCTTGTTTCATCTTGCTTTCACGTCAGCCTGTATTCGACTATCTATTTCACATCGAAAAGAAAGAAACATTGTGGCCGAACGGTCTAGTGGTATTCTCGCTTTGGGTGCGAGAGGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTAACGTTCCTAACTCTTTGA</pcr_primer_p1>
		<pcr_primer_p2>ATTCTTCTTCCGAACTTCTTATC</pcr_primer_p2>
		<pcr_amplicon_size>282</pcr_amplicon_size>
		<canonical_amplicon>AAGTAACGTTCCTAACTCTTTGATAAAAGTTTCAAACTGATTTTTGTTTTCTAAATTTTAAAAGTATTGAGTAAATAGCAAGCTGGTGCGCCTTCGGCGCGATTCAATCTATTTTTTTCAAATGTTTGTCGCTTCGTTTCTCACTTTTTCTAAATAAAAGGGTCACGTAATTATATATTTATTTTTCAATTTTTTCAAAAGTCCACAGACGGACACGAGGACGGACAGACGCCTTTAGCGTTTTATTAATAAGGAAGATGATAAGAAGTTCGGAAGAAGAAT</canonical_amplicon>
		<polymorphic_amplicon>AAGTAACGTTCCTAACTCTTTGATAAAAGTTTCAAACTGATTTTTGTTTTCTAAATTTTAAAAGTATTKAGTAAATAGCAAGCTGGTGCGCCTTCGGCGCGATTCAATCTATTTTTTTCAAATGTTTGTCGCTTCGTTTCTCACTTTTTCTAAATAAAAGGGTCACGTAATTATATATTTATTTTTCAATTTTTTCAAAAGTCCACAGACGGACACGAGGACGGACAGACGCCTTTAGCGTTTTATTAATAAGGAAGATGATAAGAAGTTCGGAAGAAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26730</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>419517</contig_pos>
        <strand>+</strand>
        <context>TGGGTTGCTT[A/G]TTGTCTATTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGATATCTGAAATACTTCCGTGGTTGGAAATCTGTGGTTTGGGTTGCTT</left_flank>
        <right_flank>TTGTCTATTATTTGGTGCCAGTTGGTGGATGTTAGTGTTCTTCTTGCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACTGTTTTTATCACAAAAAATGTCGGATAACTTTCTCTTTCTAACTTCAATCGCACGAACAATAAGTAACCTGGCATTTTTATCAAGCTCTCTTCTCGGTATCATTTTGATATTTCTGACTCTGTTTGGAGTTCGTAAAATCTTTGAAACGTATAAATATCTCATGATTGCCTTCACATTTTTCGGGATAAGTTTTACGTGTTTGGATGCTTTGTTTCACCCGAAACTTCATTTTTATAATAGTGGTTGTGTGTTTTTCGCACTGTCTTGTCCGTTTGGATTGAGTTTAGAGATAATTCAAGCCATGTTAGGTAAGTTAATACTTAAAGTCATGGTGAAAAAATGGATACTTCGAAAATGATCAGCTTTTTACGCTAGTTTCTATTGCTTAACAATATCCATGTTAACTATTCAATTCATTTACCGTTACTGGGCTTTGTTTTCAATAAGATATCTGAAATACTTCCGTGGTTGGAAATCTGTGGTTTGGGTTGCTTGTTGTCTATTATTTGGTGCCAGTTGGTGGATGTTAGTGTTCTTCTTGCTGAAAATGGATGCGATCGCACGAAACTATTTTAAAGATGAAATAATGCTTCGCTATAACGCAATTATCGATGAGATCCCAGCGAAAACTTCATTGCCGTTTGACCCGAACAATGGAAATTTAAGAAAATGGGATGCGCTCTACACACTGTTGACCACATTGTCGACTGTATTACAATATATGATTATGATCTATTGTGGATGGAAAATGTACACGAAAATGGAAGAAAAAGTGGCGCTATTATCAGATTCATTGAAAAATCACCACCGGCAGTTGTTCAAAACTCTTGTTCTACAGATCAGCTGTCCAACTATTTTTCTTTTCTCCCCAATAATGCTCAGCATATATCTTCCGTATTGTCAAATGAAGATCAGTTTTCCGGCTGATGTTTTTTTCACTGCATACAATATCTATCCAGCTATGGATTCTACAATTGTGTTCCTAACTATTACTG</canonical>
            <polymorphic>CTACTGTTTTTATCACAAAAAATGTCGGATAACTTTCTCTTTCTAACTTCAATCGCACGAACAATAAGTAACCTGGCATTTTTATCAAGCTCTCTTCTCGGTATCATTTTGATATTTCTGACTCTGTTTGGAGTTCGTAAAATCTTTGAAACGTATAAATATCTCATGATTGCCTTCACATTTTTCGGGATAAGTTTTACGTGTTTGGATGCTTTGTTTCACCCGAAACTTCATTTTTATAATAGTGGTTGTGTGTTTTTCGCACTGTCTTGTCCGTTTGGATTGAGTTTAGAGATAATTCAAGCCATGTTAGGTAAGTTAATACTTAAAGTCATGGTGAAAAAATGGATACTTCGAAAATGATCAGCTTTTTACGCTAGTTTCTATTGCTTAACAATATCCATGTTAACTATTCAATTCATTTACCGTTACTGGGCTTTGTTTTCAATAAGATATCTGAAATACTTCCGTGGTTGGAAATCTGTGGTTTGGGTTGCTTRTTGTCTATTATTTGGTGCCAGTTGGTGGATGTTAGTGTTCTTCTTGCTGAAAATGGATGCGATCGCACGAAACTATTTTAAAGATGAAATAATGCTTCGCTATAACGCAATTATCGATGAGATCCCAGCGAAAACTTCATTGCCGTTTGACCCGAACAATGGAAATTTAAGAAAATGGGATGCGCTCTACACACTGTTGACCACATTGTCGACTGTATTACAATATATGATTATGATCTATTGTGGATGGAAAATGTACACGAAAATGGAAGAAAAAGTGGCGCTATTATCAGATTCATTGAAAAATCACCACCGGCAGTTGTTCAAAACTCTTGTTCTACAGATCAGCTGTCCAACTATTTTTCTTTTCTCCCCAATAATGCTCAGCATATATCTTCCGTATTGTCAAATGAAGATCAGTTTTCCGGCTGATGTTTTTTTCACTGCATACAATATCTATCCAGCTATGGATTCTACAATTGTGTTCCTAACTATTACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATCAGCTTTTTACGCTAGT</pcr_primer_p1>
		<pcr_primer_p2>TATAGCGAAGCATTATTTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATGATCAGCTTTTTACGCTAGTTTCTATTGCTTAACAATATCCATGTTAACTATTCAATTCATTTACCGTTACTGGGCTTTGTTTTCAATAAGATATCTGAAATACTTCCGTGGTTGGAAATCTGTGGTTTGGGTTGCTTGTTGTCTATTATTTGGTGCCAGTTGGTGGATGTTAGTGTTCTTCTTGCTGAAAATGGATGCGATCGCACGAAACTATTTTAAAGATGAAATAATGCTTCGCTATA</canonical_amplicon>
		<polymorphic_amplicon>ATGATCAGCTTTTTACGCTAGTTTCTATTGCTTAACAATATCCATGTTAACTATTCAATTCATTTACCGTTACTGGGCTTTGTTTTCAATAAGATATCTGAAATACTTCCGTGGTTGGAAATCTGTGGTTTGGGTTGCTTRTTGTCTATTATTTGGTGCCAGTTGGTGGATGTTAGTGTTCTTCTTGCTGAAAATGGATGCGATCGCACGAAACTATTTTAAAGATGAAATAATGCTTCGCTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26731</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>419564</contig_pos>
        <strand>+</strand>
        <context>GTTCTTYYTG[A/C]TGAAAATGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTGTTGTCTATTATTTGGTGCCAGTTGGTGGATGTTAGTGTTCTTCTTG</left_flank>
        <right_flank>TGAAAATGGATGCGATCGCACGAAACTATTTTAAAGATGAAATAATGCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAATCGCACGAACAATAAGTAACCTGGCATTTTTATCAAGCTCTCTTCTCGGTATCATTTTGATATTTCTGACTCTGTTTGGAGTTCGTAAAATCTTTGAAACGTATAAATATCTCATGATTGCCTTCACATTTTTCGGGATAAGTTTTACGTGTTTGGATGCTTTGTTTCACCCGAAACTTCATTTTTATAATAGTGGTTGTGTGTTTTTCGCACTGTCTTGTCCGTTTGGATTGAGTTTAGAGATAATTCAAGCCATGTTAGGTAAGTTAATACTTAAAGTCATGGTGAAAAAATGGATACTTCGAAAATGATCAGCTTTTTACGCTAGTTTCTATTGCTTAACAATATCCATGTTAACTATTCAATTCATTTACCGTTACTGGGCTTTGTTTTCAATAAGATATCTGAAATACTTCCGTGGTTGGAAATCTGTGGTTTGGGTTGCTTGTTGTCTATTATTTGGTGCCAGTTGGTGGATGTTAGTGTTCTTCTTGCTGAAAATGGATGCGATCGCACGAAACTATTTTAAAGATGAAATAATGCTTCGCTATAACGCAATTATCGATGAGATCCCAGCGAAAACTTCATTGCCGTTTGACCCGAACAATGGAAATTTAAGAAAATGGGATGCGCTCTACACACTGTTGACCACATTGTCGACTGTATTACAATATATGATTATGATCTATTGTGGATGGAAAATGTACACGAAAATGGAAGAAAAAGTGGCGCTATTATCAGATTCATTGAAAAATCACCACCGGCAGTTGTTCAAAACTCTTGTTCTACAGATCAGCTGTCCAACTATTTTTCTTTTCTCCCCAATAATGCTCAGCATATATCTTCCGTATTGTCAAATGAAGATCAGTTTTCCGGCTGATGTTTTTTTCACTGCATACAATATCTATCCAGCTATGGATTCTACAATTGTGTTCCTAACTATTACTGAGTATAGATTTGCTGCAAAACGTTGGTGTTCGAAAACTGATTAATTT</canonical>
            <polymorphic>TTCAATCGCACGAACAATAAGTAACCTGGCATTTTTATCAAGCTCTCTTCTCGGTATCATTTTGATATTTCTGACTCTGTTTGGAGTTCGTAAAATCTTTGAAACGTATAAATATCTCATGATTGCCTTCACATTTTTCGGGATAAGTTTTACGTGTTTGGATGCTTTGTTTCACCCGAAACTTCATTTTTATAATAGTGGTTGTGTGTTTTTCGCACTGTCTTGTCCGTTTGGATTGAGTTTAGAGATAATTCAAGCCATGTTAGGTAAGTTAATACTTAAAGTCATGGTGAAAAAATGGATACTTCGAAAATGATCAGCTTTTTACGCTAGTTTCTATTGCTTAACAATATCCATGTTAACTATTCAATTCATTTACCGTTACTGGGCTTTGTTTTCAATAAGATATCTGAAATACTTCCGTGGTTGGAAATCTGTGGTTTGGGTTGCTTGTTGTCTATTATTTGGTGCCAGTTGGTGGATGTTAGTGTTCTTCTTGMTGAAAATGGATGCGATCGCACGAAACTATTTTAAAGATGAAATAATGCTTCGCTATAACGCAATTATCGATGAGATCCCAGCGAAAACTTCATTGCCGTTTGACCCGAACAATGGAAATTTAAGAAAATGGGATGCGCTCTACACACTGTTGACCACATTGTCGACTGTATTACAATATATGATTATGATCTATTGTGGATGGAAAATGTACACGAAAATGGAAGAAAAAGTGGCGCTATTATCAGATTCATTGAAAAATCACCACCGGCAGTTGTTCAAAACTCTTGTTCTACAGATCAGCTGTCCAACTATTTTTCTTTTCTCCCCAATAATGCTCAGCATATATCTTCCGTATTGTCAAATGAAGATCAGTTTTCCGGCTGATGTTTTTTTCACTGCATACAATATCTATCCAGCTATGGATTCTACAATTGTGTTCCTAACTATTACTGAGTATAGATTTGCTGCAAAACGTTGGTGTTCGAAAACTGATTAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATCAGCTTTTTACGCTAGT</pcr_primer_p1>
		<pcr_primer_p2>TATAGCGAAGCATTATTTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATGATCAGCTTTTTACGCTAGTTTCTATTGCTTAACAATATCCATGTTAACTATTCAATTCATTTACCGTTACTGGGCTTTGTTTTCAATAAGATATCTGAAATACTTCCGTGGTTGGAAATCTGTGGTTTGGGTTGCTTGTTGTCTATTATTTGGTGCCAGTTGGTGGATGTTAGTGTTCTTCTTGCTGAAAATGGATGCGATCGCACGAAACTATTTTAAAGATGAAATAATGCTTCGCTATA</canonical_amplicon>
		<polymorphic_amplicon>ATGATCAGCTTTTTACGCTAGTTTCTATTGCTTAACAATATCCATGTTAACTATTCAATTCATTTACCGTTACTGGGCTTTGTTTTCAATAAGATATCTGAAATACTTCCGTGGTTGGAAATCTGTGGTTTGGGTTGCTTGTTGTCTATTATTTGGTGCCAGTTGGTGGATGTTAGTGTTCTTCTTGMTGAAAATGGATGCGATCGCACGAAACTATTTTAAAGATGAAATAATGCTTCGCTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26732</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>419798</contig_pos>
        <strand>+</strand>
        <context>AGAAAAAGTG[A/G]CRCTATTATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATGATCTATTGTGGATGGAAAATGTACACGAAAATGGAAGAAAAAGTG</left_flank>
        <right_flank>CGCTATTATCAGATTCATTGAAAAATCACCACCGGCAGTTGTTCAAAACT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGAGTTTAGAGATAATTCAAGCCATGTTAGGTAAGTTAATACTTAAAGTCATGGTGAAAAAATGGATACTTCGAAAATGATCAGCTTTTTACGCTAGTTTCTATTGCTTAACAATATCCATGTTAACTATTCAATTCATTTACCGTTACTGGGCTTTGTTTTCAATAAGATATCTGAAATACTTCCGTGGTTGGAAATCTGTGGTTTGGGTTGCTTGTTGTCTATTATTTGGTGCCAGTTGGTGGATGTTAGTGTTCTTCTTGCTGAAAATGGATGCGATCGCACGAAACTATTTTAAAGATGAAATAATGCTTCGCTATAACGCAATTATCGATGAGATCCCAGCGAAAACTTCATTGCCGTTTGACCCGAACAATGGAAATTTAAGAAAATGGGATGCGCTCTACACACTGTTGACCACATTGTCGACTGTATTACAATATATGATTATGATCTATTGTGGATGGAAAATGTACACGAAAATGGAAGAAAAAGTGGCGCTATTATCAGATTCATTGAAAAATCACCACCGGCAGTTGTTCAAAACTCTTGTTCTACAGATCAGCTGTCCAACTATTTTTCTTTTCTCCCCAATAATGCTCAGCATATATCTTCCGTATTGTCAAATGAAGATCAGTTTTCCGGCTGATGTTTTTTTCACTGCATACAATATCTATCCAGCTATGGATTCTACAATTGTGTTCCTAACTATTACTGAGTATAGATTTGCTGCAAAACGTTGGTGTTCGAAAACTGATTAATTTAGAGAACATATTTTTACAGGGTTATGGAATAGTTTTCTGCGGAAAATATTTTCGGCGAAAAATAAGCAACATAATTCATCAAGGCCTGCTGATGGACAACTTGCAAATACAGCTTCCACGACAATATAAAAAGAATGTTTTATTTTAAAAACAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACAACG</canonical>
            <polymorphic>ATTGAGTTTAGAGATAATTCAAGCCATGTTAGGTAAGTTAATACTTAAAGTCATGGTGAAAAAATGGATACTTCGAAAATGATCAGCTTTTTACGCTAGTTTCTATTGCTTAACAATATCCATGTTAACTATTCAATTCATTTACCGTTACTGGGCTTTGTTTTCAATAAGATATCTGAAATACTTCCGTGGTTGGAAATCTGTGGTTTGGGTTGCTTGTTGTCTATTATTTGGTGCCAGTTGGTGGATGTTAGTGTTCTTCTTGCTGAAAATGGATGCGATCGCACGAAACTATTTTAAAGATGAAATAATGCTTCGCTATAACGCAATTATCGATGAGATCCCAGCGAAAACTTCATTGCCGTTTGACCCGAACAATGGAAATTTAAGAAAATGGGATGCGCTCTACACACTGTTGACCACATTGTCGACTGTATTACAATATATGATTATGATCTATTGTGGATGGAAAATGTACACGAAAATGGAAGAAAAAGTGRCGCTATTATCAGATTCATTGAAAAATCACCACCGGCAGTTGTTCAAAACTCTTGTTCTACAGATCAGCTGTCCAACTATTTTTCTTTTCTCCCCAATAATGCTCAGCATATATCTTCCGTATTGTCAAATGAAGATCAGTTTTCCGGCTGATGTTTTTTTCACTGCATACAATATCTATCCAGCTATGGATTCTACAATTGTGTTCCTAACTATTACTGAGTATAGATTTGCTGCAAAACGTTGGTGTTCGAAAACTGATTAATTTAGAGAACATATTTTTACAGGGTTATGGAATAGTTTTCTGCGGAAAATATTTTCGGCGAAAAATAAGCAACATAATTCATCAAGGCCTGCTGATGGACAACTTGCAAATACAGCTTCCACGACAATATAAAAAGAATGTTTTATTTTAAAAACAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACAACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>498 403 99</canonical_bands>
                <polymorphic_bands>597 403</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATAACGCAATTATCGATGAGA</pcr_primer_p1>
		<pcr_primer_p2>GCTGATCTGTAGAACAAGAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATAACGCAATTATCGATGAGATCCCAGCGAAAACTTCATTGCCGTTTGACCCGAACAATGGAAATTTAAGAAAATGGGATGCGCTCTACACACTGTTGACCACATTGTCGACTGTATTACAATATATGATTATGATCTATTGTGGATGGAAAATGTACACGAAAATGGAAGAAAAAGTGGCGCTATTATCAGATTCATTGAAAAATCACCACCGGCAGTTGTTCAAAACTCTTGTTCTACAGATCAGC</canonical_amplicon>
		<polymorphic_amplicon>CTATAACGCAATTATCGATGAGATCCCAGCGAAAACTTCATTGCCGTTTGACCCGAACAATGGAAATTTAAGAAAATGGGATGCGCTCTACACACTGTTGACCACATTGTCGACTGTATTACAATATATGATTATGATCTATTGTGGATGGAAAATGTACACGAAAATGGAAGAAAAAGTGRCGCTATTATCAGATTCATTGAAAAATCACCACCGGCAGTTGTTCAAAACTCTTGTTCTACAGATCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26733</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>419800</contig_pos>
        <strand>+</strand>
        <context>AAAAAGTGRC[A/G]CTATTATCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGATCTATTGTGGATGGAAAATGTACACGAAAATGGAAGAAAAAGTGGC</left_flank>
        <right_flank>CTATTATCAGATTCATTGAAAAATCACCACCGGCAGTTGTTCAAAACTCT</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGTTTAGAGATAATTCAAGCCATGTTAGGTAAGTTAATACTTAAAGTCATGGTGAAAAAATGGATACTTCGAAAATGATCAGCTTTTTACGCTAGTTTCTATTGCTTAACAATATCCATGTTAACTATTCAATTCATTTACCGTTACTGGGCTTTGTTTTCAATAAGATATCTGAAATACTTCCGTGGTTGGAAATCTGTGGTTTGGGTTGCTTGTTGTCTATTATTTGGTGCCAGTTGGTGGATGTTAGTGTTCTTCTTGCTGAAAATGGATGCGATCGCACGAAACTATTTTAAAGATGAAATAATGCTTCGCTATAACGCAATTATCGATGAGATCCCAGCGAAAACTTCATTGCCGTTTGACCCGAACAATGGAAATTTAAGAAAATGGGATGCGCTCTACACACTGTTGACCACATTGTCGACTGTATTACAATATATGATTATGATCTATTGTGGATGGAAAATGTACACGAAAATGGAAGAAAAAGTGGCGCTATTATCAGATTCATTGAAAAATCACCACCGGCAGTTGTTCAAAACTCTTGTTCTACAGATCAGCTGTCCAACTATTTTTCTTTTCTCCCCAATAATGCTCAGCATATATCTTCCGTATTGTCAAATGAAGATCAGTTTTCCGGCTGATGTTTTTTTCACTGCATACAATATCTATCCAGCTATGGATTCTACAATTGTGTTCCTAACTATTACTGAGTATAGATTTGCTGCAAAACGTTGGTGTTCGAAAACTGATTAATTTAGAGAACATATTTTTACAGGGTTATGGAATAGTTTTCTGCGGAAAATATTTTCGGCGAAAAATAAGCAACATAATTCATCAAGGCCTGCTGATGGACAACTTGCAAATACAGCTTCCACGACAATATAAAAAGAATGTTTTATTTTAAAAACAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACAACGTC</canonical>
            <polymorphic>TGAGTTTAGAGATAATTCAAGCCATGTTAGGTAAGTTAATACTTAAAGTCATGGTGAAAAAATGGATACTTCGAAAATGATCAGCTTTTTACGCTAGTTTCTATTGCTTAACAATATCCATGTTAACTATTCAATTCATTTACCGTTACTGGGCTTTGTTTTCAATAAGATATCTGAAATACTTCCGTGGTTGGAAATCTGTGGTTTGGGTTGCTTGTTGTCTATTATTTGGTGCCAGTTGGTGGATGTTAGTGTTCTTCTTGCTGAAAATGGATGCGATCGCACGAAACTATTTTAAAGATGAAATAATGCTTCGCTATAACGCAATTATCGATGAGATCCCAGCGAAAACTTCATTGCCGTTTGACCCGAACAATGGAAATTTAAGAAAATGGGATGCGCTCTACACACTGTTGACCACATTGTCGACTGTATTACAATATATGATTATGATCTATTGTGGATGGAAAATGTACACGAAAATGGAAGAAAAAGTGGCRCTATTATCAGATTCATTGAAAAATCACCACCGGCAGTTGTTCAAAACTCTTGTTCTACAGATCAGCTGTCCAACTATTTTTCTTTTCTCCCCAATAATGCTCAGCATATATCTTCCGTATTGTCAAATGAAGATCAGTTTTCCGGCTGATGTTTTTTTCACTGCATACAATATCTATCCAGCTATGGATTCTACAATTGTGTTCCTAACTATTACTGAGTATAGATTTGCTGCAAAACGTTGGTGTTCGAAAACTGATTAATTTAGAGAACATATTTTTACAGGGTTATGGAATAGTTTTCTGCGGAAAATATTTTCGGCGAAAAATAAGCAACATAATTCATCAAGGCCTGCTGATGGACAACTTGCAAATACAGCTTCCACGACAATATAAAAAGAATGTTTTATTTTAAAAACAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACAACGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 401 99</canonical_bands>
                <polymorphic_bands>599 401</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATAACGCAATTATCGATGAGA</pcr_primer_p1>
		<pcr_primer_p2>GCTGATCTGTAGAACAAGAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATAACGCAATTATCGATGAGATCCCAGCGAAAACTTCATTGCCGTTTGACCCGAACAATGGAAATTTAAGAAAATGGGATGCGCTCTACACACTGTTGACCACATTGTCGACTGTATTACAATATATGATTATGATCTATTGTGGATGGAAAATGTACACGAAAATGGAAGAAAAAGTGGCGCTATTATCAGATTCATTGAAAAATCACCACCGGCAGTTGTTCAAAACTCTTGTTCTACAGATCAGC</canonical_amplicon>
		<polymorphic_amplicon>CTATAACGCAATTATCGATGAGATCCCAGCGAAAACTTCATTGCCGTTTGACCCGAACAATGGAAATTTAAGAAAATGGGATGCGCTCTACACACTGTTGACCACATTGTCGACTGTATTACAATATATGATTATGATCTATTGTGGATGGAAAATGTACACGAAAATGGAAGAAAAAGTGGCRCTATTATCAGATTCATTGAAAAATCACCACCGGCAGTTGTTCAAAACTCTTGTTCTACAGATCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26734</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>420746</contig_pos>
        <strand>+</strand>
        <context>AACTTTATGT[C/G]TAACATTCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCCCGGTTCGGCCCAGTTCTTTTTTATGCATTCCATAATAAACTTTATGT</left_flank>
        <right_flank>TAACATTCTGAACAAAACAGTTGTTTTACTTTTACTCAATATATACATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACAACGTCTCTTTCTTTTATATATAAAAGACATGAAAATCCCGTGAAAAGAGGAATATCCGATCTTATCAGTGTGTGGAATCATCACTTCCTTTTTGCCTTTTTTCACGTCATCTGTATCCGAATATCTCTTCCTATCCAAAAGAACAAAACATTGTGGTCAAATGCTCTAGACCATTTGGCCACAATGTTTCTTTCTTTTGGATATACGAGACATGAAAAGTCGTGAAAACAGGATTATCCGATCGTTTCAATGTGTGGAATATGTCACTTCCTTGTTTTCTTTTCCTTTCACGCCATCTTGCCTTCAATTATCTATTTCACATCGAAAAGAAAGAAACATTGTGGCCGAATGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAATCCCCGGTTCGGCCCAGTTCTTTTTTATGCATTCCATAATAAACTTTATGTCTAACATTCTGAACAAAACAGTTGTTTTACTTTTACTCAATATATACATCAAAAACTCGTGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATACGTTTTCCTAGGCGATATTTTTTTACCAGTCAAACAACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTCCTGCTAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTTGTCCTCTTCATATAATTCATCTCAACTTTCGAACCACTTTCTGGACTTTGCCTAATTTCAAAATATTTGATATTTTTTCACTGCAAGCCAACTTGCCGCCGCCAATCGTCCGTCCCGATGTAGCGTTCGATTTCTTGGTTATCCAGAACAAAACAGTTATTGTTTTTTTTTCTCAGTTTCTACAATATCCCAGGCGTATTACCGGTTCGTTTA</canonical>
            <polymorphic>ACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACAACGTCTCTTTCTTTTATATATAAAAGACATGAAAATCCCGTGAAAAGAGGAATATCCGATCTTATCAGTGTGTGGAATCATCACTTCCTTTTTGCCTTTTTTCACGTCATCTGTATCCGAATATCTCTTCCTATCCAAAAGAACAAAACATTGTGGTCAAATGCTCTAGACCATTTGGCCACAATGTTTCTTTCTTTTGGATATACGAGACATGAAAAGTCGTGAAAACAGGATTATCCGATCGTTTCAATGTGTGGAATATGTCACTTCCTTGTTTTCTTTTCCTTTCACGCCATCTTGCCTTCAATTATCTATTTCACATCGAAAAGAAAGAAACATTGTGGCCGAATGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAATCCCCGGTTCGGCCCAGTTCTTTTTTATGCATTCCATAATAAACTTTATGTSTAACATTCTGAACAAAACAGTTGTTTTACTTTTACTCAATATATACATCAAAAACTCGTGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATACGTTTTCCTAGGCGATATTTTTTTACCAGTCAAACAACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTCCTGCTAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTTGTCCTCTTCATATAATTCATCTCAACTTTCGAACCACTTTCTGGACTTTGCCTAATTTCAAAATATTTGATATTTTTTCACTGCAAGCCAACTTGCCGCCGCCAATCGTCCGTCCCGATGTAGCGTTCGATTTCTTGGTTATCCAGAACAAAACAGTTATTGTTTTTTTTTCTCAGTTTCTACAATATCCCAGGCGTATTACCGGTTCGTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGCCTTCAATTATCTATTTCAC</pcr_primer_p1>
		<pcr_primer_p2>AGAGGACTTGTTTTTGAGATGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTGCCTTCAATTATCTATTTCACATCGAAAAGAAAGAAACATTGTGGCCGAATGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAATCCCCGGTTCGGCCCAGTTCTTTTTTATGCATTCCATAATAAACTTTATGTCTAACATTCTGAACAAAACAGTTGTTTTACTTTTACTCAATATATACATCAAAAACTCGTGTTATCGATACATTCATCTCAAAAACAAGTCCTCT</canonical_amplicon>
		<polymorphic_amplicon>TTGCCTTCAATTATCTATTTCACATCGAAAAGAAAGAAACATTGTGGCCGAATGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAATCCCCGGTTCGGCCCAGTTCTTTTTTATGCATTCCATAATAAACTTTATGTSTAACATTCTGAACAAAACAGTTGTTTTACTTTTACTCAATATATACATCAAAAACTCGTGTTATCGATACATTCATCTCAAAAACAAGTCCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26735</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>420803</contig_pos>
        <strand>+</strand>
        <context>ATCAAAAACT[C/T]GTGTTATCGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTGAACAAAACAGTTGTTTTACTTTTACTCAATATATACATCAAAAACT</left_flank>
        <right_flank>GTGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTTTATATATAAAAGACATGAAAATCCCGTGAAAAGAGGAATATCCGATCTTATCAGTGTGTGGAATCATCACTTCCTTTTTGCCTTTTTTCACGTCATCTGTATCCGAATATCTCTTCCTATCCAAAAGAACAAAACATTGTGGTCAAATGCTCTAGACCATTTGGCCACAATGTTTCTTTCTTTTGGATATACGAGACATGAAAAGTCGTGAAAACAGGATTATCCGATCGTTTCAATGTGTGGAATATGTCACTTCCTTGTTTTCTTTTCCTTTCACGCCATCTTGCCTTCAATTATCTATTTCACATCGAAAAGAAAGAAACATTGTGGCCGAATGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAATCCCCGGTTCGGCCCAGTTCTTTTTTATGCATTCCATAATAAACTTTATGTCTAACATTCTGAACAAAACAGTTGTTTTACTTTTACTCAATATATACATCAAAAACTCGTGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATACGTTTTCCTAGGCGATATTTTTTTACCAGTCAAACAACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTCCTGCTAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTTGTCCTCTTCATATAATTCATCTCAACTTTCGAACCACTTTCTGGACTTTGCCTAATTTCAAAATATTTGATATTTTTTCACTGCAAGCCAACTTGCCGCCGCCAATCGTCCGTCCCGATGTAGCGTTCGATTTCTTGGTTATCCAGAACAAAACAGTTATTGTTTTTTTTTCTCAGTTTCTACAATATCCCAGGCGTATTACCGGTTCGTTTATCTTGAAAAAAACTGATCTAAATAGCCGAAGGAAATTGAAAAAGGCAATTTCCTATG</canonical>
            <polymorphic>TTCTTTTATATATAAAAGACATGAAAATCCCGTGAAAAGAGGAATATCCGATCTTATCAGTGTGTGGAATCATCACTTCCTTTTTGCCTTTTTTCACGTCATCTGTATCCGAATATCTCTTCCTATCCAAAAGAACAAAACATTGTGGTCAAATGCTCTAGACCATTTGGCCACAATGTTTCTTTCTTTTGGATATACGAGACATGAAAAGTCGTGAAAACAGGATTATCCGATCGTTTCAATGTGTGGAATATGTCACTTCCTTGTTTTCTTTTCCTTTCACGCCATCTTGCCTTCAATTATCTATTTCACATCGAAAAGAAAGAAACATTGTGGCCGAATGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAATCCCCGGTTCGGCCCAGTTCTTTTTTATGCATTCCATAATAAACTTTATGTCTAACATTCTGAACAAAACAGTTGTTTTACTTTTACTCAATATATACATCAAAAACTYGTGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATACGTTTTCCTAGGCGATATTTTTTTACCAGTCAAACAACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTCCTGCTAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTTGTCCTCTTCATATAATTCATCTCAACTTTCGAACCACTTTCTGGACTTTGCCTAATTTCAAAATATTTGATATTTTTTCACTGCAAGCCAACTTGCCGCCGCCAATCGTCCGTCCCGATGTAGCGTTCGATTTCTTGGTTATCCAGAACAAAACAGTTATTGTTTTTTTTTCTCAGTTTCTACAATATCCCAGGCGTATTACCGGTTCGTTTATCTTGAAAAAAACTGATCTAAATAGCCGAAGGAAATTGAAAAAGGCAATTTCCTATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAAAAGAAAGAAACATTGTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTATTTCCTTTTTCTATCC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CGAAAAGAAAGAAACATTGTGGCCGAATGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAATCCCCGGTTCGGCCCAGTTCTTTTTTATGCATTCCATAATAAACTTTATGTCTAACATTCTGAACAAAACAGTTGTTTTACTTTTACTCAATATATACATCAAAAACTCGTGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CGAAAAGAAAGAAACATTGTGGCCGAATGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAATCCCCGGTTCGGCCCAGTTCTTTTTTATGCATTCCATAATAAACTTTATGTCTAACATTCTGAACAAAACAGTTGTTTTACTTTTACTCAATATATACATCAAAAACTYGTGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26736</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>420870</contig_pos>
        <strand>+</strand>
        <context>ATAGAAAAAT[A/G]CGTTTTCCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAAT</left_flank>
        <right_flank>CGTTTTCCTAGGCGATATTTTTTTACCAGTCAAACAACAGGCTCCACAAT</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCATCACTTCCTTTTTGCCTTTTTTCACGTCATCTGTATCCGAATATCTCTTCCTATCCAAAAGAACAAAACATTGTGGTCAAATGCTCTAGACCATTTGGCCACAATGTTTCTTTCTTTTGGATATACGAGACATGAAAAGTCGTGAAAACAGGATTATCCGATCGTTTCAATGTGTGGAATATGTCACTTCCTTGTTTTCTTTTCCTTTCACGCCATCTTGCCTTCAATTATCTATTTCACATCGAAAAGAAAGAAACATTGTGGCCGAATGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAATCCCCGGTTCGGCCCAGTTCTTTTTTATGCATTCCATAATAAACTTTATGTCTAACATTCTGAACAAAACAGTTGTTTTACTTTTACTCAATATATACATCAAAAACTCGTGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATACGTTTTCCTAGGCGATATTTTTTTACCAGTCAAACAACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTCCTGCTAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTTGTCCTCTTCATATAATTCATCTCAACTTTCGAACCACTTTCTGGACTTTGCCTAATTTCAAAATATTTGATATTTTTTCACTGCAAGCCAACTTGCCGCCGCCAATCGTCCGTCCCGATGTAGCGTTCGATTTCTTGGTTATCCAGAACAAAACAGTTATTGTTTTTTTTTCTCAGTTTCTACAATATCCCAGGCGTATTACCGGTTCGTTTATCTTGAAAAAAACTGATCTAAATAGCCGAAGGAAATTGAAAAAGGCAATTTCCTATGCAATGCTAGAGTAACGAATTTTCGATAAATCTTATATTACTAATACACAGTAGGTGGTTTTTGTCGT</canonical>
            <polymorphic>AATCATCACTTCCTTTTTGCCTTTTTTCACGTCATCTGTATCCGAATATCTCTTCCTATCCAAAAGAACAAAACATTGTGGTCAAATGCTCTAGACCATTTGGCCACAATGTTTCTTTCTTTTGGATATACGAGACATGAAAAGTCGTGAAAACAGGATTATCCGATCGTTTCAATGTGTGGAATATGTCACTTCCTTGTTTTCTTTTCCTTTCACGCCATCTTGCCTTCAATTATCTATTTCACATCGAAAAGAAAGAAACATTGTGGCCGAATGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAATCCCCGGTTCGGCCCAGTTCTTTTTTATGCATTCCATAATAAACTTTATGTCTAACATTCTGAACAAAACAGTTGTTTTACTTTTACTCAATATATACATCAAAAACTCGTGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATRCGTTTTCCTAGGCGATATTTTTTTACCAGTCAAACAACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTCCTGCTAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTTGTCCTCTTCATATAATTCATCTCAACTTTCGAACCACTTTCTGGACTTTGCCTAATTTCAAAATATTTGATATTTTTTCACTGCAAGCCAACTTGCCGCCGCCAATCGTCCGTCCCGATGTAGCGTTCGATTTCTTGGTTATCCAGAACAAAACAGTTATTGTTTTTTTTTCTCAGTTTCTACAATATCCCAGGCGTATTACCGGTTCGTTTATCTTGAAAAAAACTGATCTAAATAGCCGAAGGAAATTGAAAAAGGCAATTTCCTATGCAATGCTAGAGTAACGAATTTTCGATAAATCTTATATTACTAATACACAGTAGGTGGTTTTTGTCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>500 471 29</canonical_bands>
                <polymorphic_bands>971 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTATCGATACATTCATCTCAA</pcr_primer_p1>
		<pcr_primer_p2>TGAATTATATGAAGAGGACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATACGTTTTCCTAGGCGATATTTTTTTACCAGTCAAACAACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTCCTGCTAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTTGTCCTCTTCATATAATTCA</canonical_amplicon>
		<polymorphic_amplicon>TGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATRCGTTTTCCTAGGCGATATTTTTTTACCAGTCAAACAACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTCCTGCTAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTTGTCCTCTTCATATAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26737</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>420882</contig_pos>
        <strand>+</strand>
        <context>GTTTTCCTAG[A/G]CGATATTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATACGTTTTCCTAG</left_flank>
        <right_flank>CGATATTTTTTTACCAGTCAAACAACAGGCTCCACAATGAAACTGTTCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTTGCCTTTTTTCACGTCATCTGTATCCGAATATCTCTTCCTATCCAAAAGAACAAAACATTGTGGTCAAATGCTCTAGACCATTTGGCCACAATGTTTCTTTCTTTTGGATATACGAGACATGAAAAGTCGTGAAAACAGGATTATCCGATCGTTTCAATGTGTGGAATATGTCACTTCCTTGTTTTCTTTTCCTTTCACGCCATCTTGCCTTCAATTATCTATTTCACATCGAAAAGAAAGAAACATTGTGGCCGAATGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAATCCCCGGTTCGGCCCAGTTCTTTTTTATGCATTCCATAATAAACTTTATGTCTAACATTCTGAACAAAACAGTTGTTTTACTTTTACTCAATATATACATCAAAAACTCGTGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATACGTTTTCCTAGGCGATATTTTTTTACCAGTCAAACAACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTCCTGCTAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTTGTCCTCTTCATATAATTCATCTCAACTTTCGAACCACTTTCTGGACTTTGCCTAATTTCAAAATATTTGATATTTTTTCACTGCAAGCCAACTTGCCGCCGCCAATCGTCCGTCCCGATGTAGCGTTCGATTTCTTGGTTATCCAGAACAAAACAGTTATTGTTTTTTTTTCTCAGTTTCTACAATATCCCAGGCGTATTACCGGTTCGTTTATCTTGAAAAAAACTGATCTAAATAGCCGAAGGAAATTGAAAAAGGCAATTTCCTATGCAATGCTAGAGTAACGAATTTTCGATAAATCTTATATTACTAATACACAGTAGGTGGTTTTTGTCGTCTACGTCATGTT</canonical>
            <polymorphic>CTTTTTGCCTTTTTTCACGTCATCTGTATCCGAATATCTCTTCCTATCCAAAAGAACAAAACATTGTGGTCAAATGCTCTAGACCATTTGGCCACAATGTTTCTTTCTTTTGGATATACGAGACATGAAAAGTCGTGAAAACAGGATTATCCGATCGTTTCAATGTGTGGAATATGTCACTTCCTTGTTTTCTTTTCCTTTCACGCCATCTTGCCTTCAATTATCTATTTCACATCGAAAAGAAAGAAACATTGTGGCCGAATGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAATCCCCGGTTCGGCCCAGTTCTTTTTTATGCATTCCATAATAAACTTTATGTCTAACATTCTGAACAAAACAGTTGTTTTACTTTTACTCAATATATACATCAAAAACTCGTGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATACGTTTTCCTAGRCGATATTTTTTTACCAGTCAAACAACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTCCTGCTAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTTGTCCTCTTCATATAATTCATCTCAACTTTCGAACCACTTTCTGGACTTTGCCTAATTTCAAAATATTTGATATTTTTTCACTGCAAGCCAACTTGCCGCCGCCAATCGTCCGTCCCGATGTAGCGTTCGATTTCTTGGTTATCCAGAACAAAACAGTTATTGTTTTTTTTTCTCAGTTTCTACAATATCCCAGGCGTATTACCGGTTCGTTTATCTTGAAAAAAACTGATCTAAATAGCCGAAGGAAATTGAAAAAGGCAATTTCCTATGCAATGCTAGAGTAACGAATTTTCGATAAATCTTATATTACTAATACACAGTAGGTGGTTTTTGTCGTCTACGTCATGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCTAGG</site>
                <isoschizomers>
                    <enzyme>AvrII</enzyme>
                    <enzyme>BlnI</enzyme>
                    <enzyme>BspA2I</enzyme>
                    <enzyme>XmaJI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>345 302 181 160 12</canonical_bands>
                <polymorphic_bands>526 302 160 12</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTATCGATACATTCATCTCAA</pcr_primer_p1>
		<pcr_primer_p2>TGAATTATATGAAGAGGACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATACGTTTTCCTAGGCGATATTTTTTTACCAGTCAAACAACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTCCTGCTAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTTGTCCTCTTCATATAATTCA</canonical_amplicon>
		<polymorphic_amplicon>TGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATACGTTTTCCTAGRCGATATTTTTTTACCAGTCAAACAACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTCCTGCTAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTTGTCCTCTTCATATAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26738</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>420905</contig_pos>
        <strand>+</strand>
        <context>ACCAGTCAAA[A/C]AACAGGCTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGGAAATAGAAAAATACGTTTTCCTAGGCGATATTTTTTTACCAGTCAAA</left_flank>
        <right_flank>AACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTATCCGAATATCTCTTCCTATCCAAAAGAACAAAACATTGTGGTCAAATGCTCTAGACCATTTGGCCACAATGTTTCTTTCTTTTGGATATACGAGACATGAAAAGTCGTGAAAACAGGATTATCCGATCGTTTCAATGTGTGGAATATGTCACTTCCTTGTTTTCTTTTCCTTTCACGCCATCTTGCCTTCAATTATCTATTTCACATCGAAAAGAAAGAAACATTGTGGCCGAATGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAATCCCCGGTTCGGCCCAGTTCTTTTTTATGCATTCCATAATAAACTTTATGTCTAACATTCTGAACAAAACAGTTGTTTTACTTTTACTCAATATATACATCAAAAACTCGTGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATACGTTTTCCTAGGCGATATTTTTTTACCAGTCAAACAACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTCCTGCTAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTTGTCCTCTTCATATAATTCATCTCAACTTTCGAACCACTTTCTGGACTTTGCCTAATTTCAAAATATTTGATATTTTTTCACTGCAAGCCAACTTGCCGCCGCCAATCGTCCGTCCCGATGTAGCGTTCGATTTCTTGGTTATCCAGAACAAAACAGTTATTGTTTTTTTTTCTCAGTTTCTACAATATCCCAGGCGTATTACCGGTTCGTTTATCTTGAAAAAAACTGATCTAAATAGCCGAAGGAAATTGAAAAAGGCAATTTCCTATGCAATGCTAGAGTAACGAATTTTCGATAAATCTTATATTACTAATACACAGTAGGTGGTTTTTGTCGTCTACGTCATGTTTTTCTGATAATGAAAGATCAAAA</canonical>
            <polymorphic>CTGTATCCGAATATCTCTTCCTATCCAAAAGAACAAAACATTGTGGTCAAATGCTCTAGACCATTTGGCCACAATGTTTCTTTCTTTTGGATATACGAGACATGAAAAGTCGTGAAAACAGGATTATCCGATCGTTTCAATGTGTGGAATATGTCACTTCCTTGTTTTCTTTTCCTTTCACGCCATCTTGCCTTCAATTATCTATTTCACATCGAAAAGAAAGAAACATTGTGGCCGAATGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAATCCCCGGTTCGGCCCAGTTCTTTTTTATGCATTCCATAATAAACTTTATGTCTAACATTCTGAACAAAACAGTTGTTTTACTTTTACTCAATATATACATCAAAAACTCGTGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATACGTTTTCCTAGGCGATATTTTTTTACCAGTCAAAMAACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTCCTGCTAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTTGTCCTCTTCATATAATTCATCTCAACTTTCGAACCACTTTCTGGACTTTGCCTAATTTCAAAATATTTGATATTTTTTCACTGCAAGCCAACTTGCCGCCGCCAATCGTCCGTCCCGATGTAGCGTTCGATTTCTTGGTTATCCAGAACAAAACAGTTATTGTTTTTTTTTCTCAGTTTCTACAATATCCCAGGCGTATTACCGGTTCGTTTATCTTGAAAAAAACTGATCTAAATAGCCGAAGGAAATTGAAAAAGGCAATTTCCTATGCAATGCTAGAGTAACGAATTTTCGATAAATCTTATATTACTAATACACAGTAGGTGGTTTTTGTCGTCTACGTCATGTTTTTCTGATAATGAAAGATCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTATCGATACATTCATCTCAA</pcr_primer_p1>
		<pcr_primer_p2>TGAATTATATGAAGAGGACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATACGTTTTCCTAGGCGATATTTTTTTACCAGTCAAACAACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTCCTGCTAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTTGTCCTCTTCATATAATTCA</canonical_amplicon>
		<polymorphic_amplicon>TGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATACGTTTTCCTAGGCGATATTTTTTTACCAGTCAAAMAACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTCCTGCTAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTTGTCCTCTTCATATAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26739</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>420958</contig_pos>
        <strand>+</strand>
        <context>TTTAAAATTT[C/T]STGSTAAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTT</left_flank>
        <right_flank>CTGCTAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTAGACCATTTGGCCACAATGTTTCTTTCTTTTGGATATACGAGACATGAAAAGTCGTGAAAACAGGATTATCCGATCGTTTCAATGTGTGGAATATGTCACTTCCTTGTTTTCTTTTCCTTTCACGCCATCTTGCCTTCAATTATCTATTTCACATCGAAAAGAAAGAAACATTGTGGCCGAATGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAATCCCCGGTTCGGCCCAGTTCTTTTTTATGCATTCCATAATAAACTTTATGTCTAACATTCTGAACAAAACAGTTGTTTTACTTTTACTCAATATATACATCAAAAACTCGTGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATACGTTTTCCTAGGCGATATTTTTTTACCAGTCAAACAACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTCCTGCTAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTTGTCCTCTTCATATAATTCATCTCAACTTTCGAACCACTTTCTGGACTTTGCCTAATTTCAAAATATTTGATATTTTTTCACTGCAAGCCAACTTGCCGCCGCCAATCGTCCGTCCCGATGTAGCGTTCGATTTCTTGGTTATCCAGAACAAAACAGTTATTGTTTTTTTTTCTCAGTTTCTACAATATCCCAGGCGTATTACCGGTTCGTTTATCTTGAAAAAAACTGATCTAAATAGCCGAAGGAAATTGAAAAAGGCAATTTCCTATGCAATGCTAGAGTAACGAATTTTCGATAAATCTTATATTACTAATACACAGTAGGTGGTTTTTGTCGTCTACGTCATGTTTTTCTGATAATGAAAGATCAAAATAAAAAAAAATCAGATTTTACTAAAGCTGATTGAATTTAAAACAGGAAGGAAC</canonical>
            <polymorphic>CTCTAGACCATTTGGCCACAATGTTTCTTTCTTTTGGATATACGAGACATGAAAAGTCGTGAAAACAGGATTATCCGATCGTTTCAATGTGTGGAATATGTCACTTCCTTGTTTTCTTTTCCTTTCACGCCATCTTGCCTTCAATTATCTATTTCACATCGAAAAGAAAGAAACATTGTGGCCGAATGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAATCCCCGGTTCGGCCCAGTTCTTTTTTATGCATTCCATAATAAACTTTATGTCTAACATTCTGAACAAAACAGTTGTTTTACTTTTACTCAATATATACATCAAAAACTCGTGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATACGTTTTCCTAGGCGATATTTTTTTACCAGTCAAACAACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTYCTGCTAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTTGTCCTCTTCATATAATTCATCTCAACTTTCGAACCACTTTCTGGACTTTGCCTAATTTCAAAATATTTGATATTTTTTCACTGCAAGCCAACTTGCCGCCGCCAATCGTCCGTCCCGATGTAGCGTTCGATTTCTTGGTTATCCAGAACAAAACAGTTATTGTTTTTTTTTCTCAGTTTCTACAATATCCCAGGCGTATTACCGGTTCGTTTATCTTGAAAAAAACTGATCTAAATAGCCGAAGGAAATTGAAAAAGGCAATTTCCTATGCAATGCTAGAGTAACGAATTTTCGATAAATCTTATATTACTAATACACAGTAGGTGGTTTTTGTCGTCTACGTCATGTTTTTCTGATAATGAAAGATCAAAATAAAAAAAAATCAGATTTTACTAAAGCTGATTGAATTTAAAACAGGAAGGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTATCGATACATTCATCTCAA</pcr_primer_p1>
		<pcr_primer_p2>TGAATTATATGAAGAGGACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATACGTTTTCCTAGGCGATATTTTTTTACCAGTCAAACAACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTCCTGCTAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTTGTCCTCTTCATATAATTCA</canonical_amplicon>
		<polymorphic_amplicon>TGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATACGTTTTCCTAGGCGATATTTTTTTACCAGTCAAACAACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTYCTGCTAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTTGTCCTCTTCATATAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26740</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>420959</contig_pos>
        <strand>+</strand>
        <context>TTAAAATTTY[C/G]TGSTAAATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTC</left_flank>
        <right_flank>TGCTAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAGACCATTTGGCCACAATGTTTCTTTCTTTTGGATATACGAGACATGAAAAGTCGTGAAAACAGGATTATCCGATCGTTTCAATGTGTGGAATATGTCACTTCCTTGTTTTCTTTTCCTTTCACGCCATCTTGCCTTCAATTATCTATTTCACATCGAAAAGAAAGAAACATTGTGGCCGAATGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAATCCCCGGTTCGGCCCAGTTCTTTTTTATGCATTCCATAATAAACTTTATGTCTAACATTCTGAACAAAACAGTTGTTTTACTTTTACTCAATATATACATCAAAAACTCGTGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATACGTTTTCCTAGGCGATATTTTTTTACCAGTCAAACAACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTCCTGCTAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTTGTCCTCTTCATATAATTCATCTCAACTTTCGAACCACTTTCTGGACTTTGCCTAATTTCAAAATATTTGATATTTTTTCACTGCAAGCCAACTTGCCGCCGCCAATCGTCCGTCCCGATGTAGCGTTCGATTTCTTGGTTATCCAGAACAAAACAGTTATTGTTTTTTTTTCTCAGTTTCTACAATATCCCAGGCGTATTACCGGTTCGTTTATCTTGAAAAAAACTGATCTAAATAGCCGAAGGAAATTGAAAAAGGCAATTTCCTATGCAATGCTAGAGTAACGAATTTTCGATAAATCTTATATTACTAATACACAGTAGGTGGTTTTTGTCGTCTACGTCATGTTTTTCTGATAATGAAAGATCAAAATAAAAAAAAATCAGATTTTACTAAAGCTGATTGAATTTAAAACAGGAAGGAACA</canonical>
            <polymorphic>TCTAGACCATTTGGCCACAATGTTTCTTTCTTTTGGATATACGAGACATGAAAAGTCGTGAAAACAGGATTATCCGATCGTTTCAATGTGTGGAATATGTCACTTCCTTGTTTTCTTTTCCTTTCACGCCATCTTGCCTTCAATTATCTATTTCACATCGAAAAGAAAGAAACATTGTGGCCGAATGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAATCCCCGGTTCGGCCCAGTTCTTTTTTATGCATTCCATAATAAACTTTATGTCTAACATTCTGAACAAAACAGTTGTTTTACTTTTACTCAATATATACATCAAAAACTCGTGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATACGTTTTCCTAGGCGATATTTTTTTACCAGTCAAACAACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTCSTGCTAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTTGTCCTCTTCATATAATTCATCTCAACTTTCGAACCACTTTCTGGACTTTGCCTAATTTCAAAATATTTGATATTTTTTCACTGCAAGCCAACTTGCCGCCGCCAATCGTCCGTCCCGATGTAGCGTTCGATTTCTTGGTTATCCAGAACAAAACAGTTATTGTTTTTTTTTCTCAGTTTCTACAATATCCCAGGCGTATTACCGGTTCGTTTATCTTGAAAAAAACTGATCTAAATAGCCGAAGGAAATTGAAAAAGGCAATTTCCTATGCAATGCTAGAGTAACGAATTTTCGATAAATCTTATATTACTAATACACAGTAGGTGGTTTTTGTCGTCTACGTCATGTTTTTCTGATAATGAAAGATCAAAATAAAAAAAAATCAGATTTTACTAAAGCTGATTGAATTTAAAACAGGAAGGAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTATCGATACATTCATCTCAA</pcr_primer_p1>
		<pcr_primer_p2>TGAATTATATGAAGAGGACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATACGTTTTCCTAGGCGATATTTTTTTACCAGTCAAACAACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTCCTGCTAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTTGTCCTCTTCATATAATTCA</canonical_amplicon>
		<polymorphic_amplicon>TGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATACGTTTTCCTAGGCGATATTTTTTTACCAGTCAAACAACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTCSTGCTAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTTGTCCTCTTCATATAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26741</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>420962</contig_pos>
        <strand>+</strand>
        <context>AAATTTYSTG[C/G]TAAATTTTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTCCTG</left_flank>
        <right_flank>TAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAATCGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACCATTTGGCCACAATGTTTCTTTCTTTTGGATATACGAGACATGAAAAGTCGTGAAAACAGGATTATCCGATCGTTTCAATGTGTGGAATATGTCACTTCCTTGTTTTCTTTTCCTTTCACGCCATCTTGCCTTCAATTATCTATTTCACATCGAAAAGAAAGAAACATTGTGGCCGAATGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAATCCCCGGTTCGGCCCAGTTCTTTTTTATGCATTCCATAATAAACTTTATGTCTAACATTCTGAACAAAACAGTTGTTTTACTTTTACTCAATATATACATCAAAAACTCGTGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATACGTTTTCCTAGGCGATATTTTTTTACCAGTCAAACAACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTCCTGCTAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTTGTCCTCTTCATATAATTCATCTCAACTTTCGAACCACTTTCTGGACTTTGCCTAATTTCAAAATATTTGATATTTTTTCACTGCAAGCCAACTTGCCGCCGCCAATCGTCCGTCCCGATGTAGCGTTCGATTTCTTGGTTATCCAGAACAAAACAGTTATTGTTTTTTTTTCTCAGTTTCTACAATATCCCAGGCGTATTACCGGTTCGTTTATCTTGAAAAAAACTGATCTAAATAGCCGAAGGAAATTGAAAAAGGCAATTTCCTATGCAATGCTAGAGTAACGAATTTTCGATAAATCTTATATTACTAATACACAGTAGGTGGTTTTTGTCGTCTACGTCATGTTTTTCTGATAATGAAAGATCAAAATAAAAAAAAATCAGATTTTACTAAAGCTGATTGAATTTAAAACAGGAAGGAACACAT</canonical>
            <polymorphic>AGACCATTTGGCCACAATGTTTCTTTCTTTTGGATATACGAGACATGAAAAGTCGTGAAAACAGGATTATCCGATCGTTTCAATGTGTGGAATATGTCACTTCCTTGTTTTCTTTTCCTTTCACGCCATCTTGCCTTCAATTATCTATTTCACATCGAAAAGAAAGAAACATTGTGGCCGAATGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAATCCCCGGTTCGGCCCAGTTCTTTTTTATGCATTCCATAATAAACTTTATGTCTAACATTCTGAACAAAACAGTTGTTTTACTTTTACTCAATATATACATCAAAAACTCGTGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATACGTTTTCCTAGGCGATATTTTTTTACCAGTCAAACAACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTCCTGSTAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTTGTCCTCTTCATATAATTCATCTCAACTTTCGAACCACTTTCTGGACTTTGCCTAATTTCAAAATATTTGATATTTTTTCACTGCAAGCCAACTTGCCGCCGCCAATCGTCCGTCCCGATGTAGCGTTCGATTTCTTGGTTATCCAGAACAAAACAGTTATTGTTTTTTTTTCTCAGTTTCTACAATATCCCAGGCGTATTACCGGTTCGTTTATCTTGAAAAAAACTGATCTAAATAGCCGAAGGAAATTGAAAAAGGCAATTTCCTATGCAATGCTAGAGTAACGAATTTTCGATAAATCTTATATTACTAATACACAGTAGGTGGTTTTTGTCGTCTACGTCATGTTTTTCTGATAATGAAAGATCAAAATAAAAAAAAATCAGATTTTACTAAAGCTGATTGAATTTAAAACAGGAAGGAACACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTATCGATACATTCATCTCAA</pcr_primer_p1>
		<pcr_primer_p2>TGAATTATATGAAGAGGACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATACGTTTTCCTAGGCGATATTTTTTTACCAGTCAAACAACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTCCTGCTAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTTGTCCTCTTCATATAATTCA</canonical_amplicon>
		<polymorphic_amplicon>TGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATACGTTTTCCTAGGCGATATTTTTTTACCAGTCAAACAACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTCCTGSTAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTTGTCCTCTTCATATAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26742</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>420983</contig_pos>
        <strand>+</strand>
        <context>AAAGAAAAGA[A/G]AATAAGATTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCACCAAAATTGTTATTTAAAATTTCCTGCTAAATTTTCAAAAGAAAAGA</left_flank>
        <right_flank>AATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTTCTTTTGGATATACGAGACATGAAAAGTCGTGAAAACAGGATTATCCGATCGTTTCAATGTGTGGAATATGTCACTTCCTTGTTTTCTTTTCCTTTCACGCCATCTTGCCTTCAATTATCTATTTCACATCGAAAAGAAAGAAACATTGTGGCCGAATGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAATCCCCGGTTCGGCCCAGTTCTTTTTTATGCATTCCATAATAAACTTTATGTCTAACATTCTGAACAAAACAGTTGTTTTACTTTTACTCAATATATACATCAAAAACTCGTGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATACGTTTTCCTAGGCGATATTTTTTTACCAGTCAAACAACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTCCTGCTAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTTGTCCTCTTCATATAATTCATCTCAACTTTCGAACCACTTTCTGGACTTTGCCTAATTTCAAAATATTTGATATTTTTTCACTGCAAGCCAACTTGCCGCCGCCAATCGTCCGTCCCGATGTAGCGTTCGATTTCTTGGTTATCCAGAACAAAACAGTTATTGTTTTTTTTTCTCAGTTTCTACAATATCCCAGGCGTATTACCGGTTCGTTTATCTTGAAAAAAACTGATCTAAATAGCCGAAGGAAATTGAAAAAGGCAATTTCCTATGCAATGCTAGAGTAACGAATTTTCGATAAATCTTATATTACTAATACACAGTAGGTGGTTTTTGTCGTCTACGTCATGTTTTTCTGATAATGAAAGATCAAAATAAAAAAAAATCAGATTTTACTAAAGCTGATTGAATTTAAAACAGGAAGGAACACATTCGTATTTACTGAGAATTATT</canonical>
            <polymorphic>TCTTTCTTTTGGATATACGAGACATGAAAAGTCGTGAAAACAGGATTATCCGATCGTTTCAATGTGTGGAATATGTCACTTCCTTGTTTTCTTTTCCTTTCACGCCATCTTGCCTTCAATTATCTATTTCACATCGAAAAGAAAGAAACATTGTGGCCGAATGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAATCCCCGGTTCGGCCCAGTTCTTTTTTATGCATTCCATAATAAACTTTATGTCTAACATTCTGAACAAAACAGTTGTTTTACTTTTACTCAATATATACATCAAAAACTCGTGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATACGTTTTCCTAGGCGATATTTTTTTACCAGTCAAACAACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTCCTGCTAAATTTTCAAAAGAAAAGARAATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTTGTCCTCTTCATATAATTCATCTCAACTTTCGAACCACTTTCTGGACTTTGCCTAATTTCAAAATATTTGATATTTTTTCACTGCAAGCCAACTTGCCGCCGCCAATCGTCCGTCCCGATGTAGCGTTCGATTTCTTGGTTATCCAGAACAAAACAGTTATTGTTTTTTTTTCTCAGTTTCTACAATATCCCAGGCGTATTACCGGTTCGTTTATCTTGAAAAAAACTGATCTAAATAGCCGAAGGAAATTGAAAAAGGCAATTTCCTATGCAATGCTAGAGTAACGAATTTTCGATAAATCTTATATTACTAATACACAGTAGGTGGTTTTTGTCGTCTACGTCATGTTTTTCTGATAATGAAAGATCAAAATAAAAAAAAATCAGATTTTACTAAAGCTGATTGAATTTAAAACAGGAAGGAACACATTCGTATTTACTGAGAATTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTATCGATACATTCATCTCAA</pcr_primer_p1>
		<pcr_primer_p2>TGAATTATATGAAGAGGACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATACGTTTTCCTAGGCGATATTTTTTTACCAGTCAAACAACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTCCTGCTAAATTTTCAAAAGAAAAGAGAATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTTGTCCTCTTCATATAATTCA</canonical_amplicon>
		<polymorphic_amplicon>TGTTATCGATACATTCATCTCAAAAACAAGTCCTCTGCATGGATAGAAAAAGGAAATAGAAAAATACGTTTTCCTAGGCGATATTTTTTTACCAGTCAAACAACAGGCTCCACAATGAAACTGTTCTGGCACCAAAATTGTTATTTAAAATTTCCTGCTAAATTTTCAAAAGAAAAGARAATAAGATTCTATGATTACAATAAATCGCATCGAACAAGAAGGCGTTTTTGTCCTCTTCATATAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26743</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>458169</contig_pos>
        <strand>+</strand>
        <context>AGGTACTGAC[C/T]TGTTTGRAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCACGGATTATGATCATTTAAAGGAAGCTTTTGTGACACAAGGTACTGAC</left_flank>
        <right_flank>TGTTTGGAAAGGGAATTGAGCTTTTTTGAAAGATGAACTTCAATACTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAGTAAAACACACAGAAAACAAAAACTCCGATTCAAAAATCGCTTGCGACCAACAACCTTTGACCATGTTTTCGAAGACAGTCAGAGACGATAAGGAAGTTCTCTAGTTATTGTGACTAGTGTTACTAGAAAACAGAGAAGCCTATATAAAAGAATGTCTGGTGAAAATTGTTTATACCGATTCAAAAATGAGTGTGTTCATCGTCGCATTTTTCTCATTCATAGCCGCGTACATTGTTCATTTCTACTGGAAGGTTAGCAAATATCCAAAAGGACCACTTCCACTTCCATTTGTCGGGAATTTACTACAGGTTTGTTCATTGGTCTGGGATGTAAAGAAAAATAAAGTTTAGTTCCCCGCAACCCACATACAAACGTTTTATGACGATTTGGCCAAAACCTATGGTCCATGCTTCACACTTTGGACACCAACGCCGTCGGTAGTCATCACGGATTATGATCATTTAAAGGAAGCTTTTGTGACACAAGGTACTGACTTGTTTGGAAAGGGAATTGAGCTTTTTTGAAAGATGAACTTCAATACTTCAGGCGACGCGTTCATCACACGTGGTCTCCGTCCTCCAGAAACACTTCTACACCCAGATGTGGATACTGGAATTGTTTTCTCTAATGCAGATACTTGGAGAGTTCAAAGAAGAACTTCATTGAAAATTCTCCGAGATTTTGGACTTGGCCGAAACTTGATGGAAGAGCAAGTGACACGATCGGTCCATGAAATGCTCCAACAGCTGGATAACATCAAGGATAAAACGGATGTTGATATGTACTGGCCTATTCAGCTTTGTGTCGGAAATGTGATCAATGAGAGCTTGTTCGGCTATCACTATAGTTATAAAGACACGGAAAAATTTCAAAAGTTTGTGATGATTGTGGATAGACACTTGAAAAATCTTTCTGGTCGTCCACAACTTTTGATCGCTGCCTGGCCGTGGTTAAGACATGTCCCAATCATTGGAGAAATGGGTTATCATAGCATC</canonical>
            <polymorphic>TAAAGTAAAACACACAGAAAACAAAAACTCCGATTCAAAAATCGCTTGCGACCAACAACCTTTGACCATGTTTTCGAAGACAGTCAGAGACGATAAGGAAGTTCTCTAGTTATTGTGACTAGTGTTACTAGAAAACAGAGAAGCCTATATAAAAGAATGTCTGGTGAAAATTGTTTATACCGATTCAAAAATGAGTGTGTTCATCGTCGCATTTTTCTCATTCATAGCCGCGTACATTGTTCATTTCTACTGGAAGGTTAGCAAATATCCAAAAGGACCACTTCCACTTCCATTTGTCGGGAATTTACTACAGGTTTGTTCATTGGTCTGGGATGTAAAGAAAAATAAAGTTTAGTTCCCCGCAACCCACATACAAACGTTTTATGACGATTTGGCCAAAACCTATGGTCCATGCTTCACACTTTGGACACCAACGCCGTCGGTAGTCATCACGGATTATGATCATTTAAAGGAAGCTTTTGTGACACAAGGTACTGACYTGTTTGGAAAGGGAATTGAGCTTTTTTGAAAGATGAACTTCAATACTTCAGGCGACGCGTTCATCACACGTGGTCTCCGTCCTCCAGAAACACTTCTACACCCAGATGTGGATACTGGAATTGTTTTCTCTAATGCAGATACTTGGAGAGTTCAAAGAAGAACTTCATTGAAAATTCTCCGAGATTTTGGACTTGGCCGAAACTTGATGGAAGAGCAAGTGACACGATCGGTCCATGAAATGCTCCAACAGCTGGATAACATCAAGGATAAAACGGATGTTGATATGTACTGGCCTATTCAGCTTTGTGTCGGAAATGTGATCAATGAGAGCTTGTTCGGCTATCACTATAGTTATAAAGACACGGAAAAATTTCAAAAGTTTGTGATGATTGTGGATAGACACTTGAAAAATCTTTCTGGTCGTCCACAACTTTTGATCGCTGCCTGGCCGTGGTTAAGACATGTCCCAATCATTGGAGAAATGGGTTATCATAGCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTACAGGTTTGTTCATTGGTC</pcr_primer_p1>
		<pcr_primer_p2>GCCTGAAGTATTGAAGTTCATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TACTACAGGTTTGTTCATTGGTCTGGGATGTAAAGAAAAATAAAGTTTAGTTCCCCGCAACCCACATACAAACGTTTTATGACGATTTGGCCAAAACCTATGGTCCATGCTTCACACTTTGGACACCAACGCCGTCGGTAGTCATCACGGATTATGATCATTTAAAGGAAGCTTTTGTGACACAAGGTACTGACTTGTTTGGAAAGGGAATTGAGCTTTTTTGAAAGATGAACTTCAATACTTCAGGC</canonical_amplicon>
		<polymorphic_amplicon>TACTACAGGTTTGTTCATTGGTCTGGGATGTAAAGAAAAATAAAGTTTAGTTCCCCGCAACCCACATACAAACGTTTTATGACGATTTGGCCAAAACCTATGGTCCATGCTTCACACTTTGGACACCAACGCCGTCGGTAGTCATCACGGATTATGATCATTTAAAGGAAGCTTTTGTGACACAAGGTACTGACYTGTTTGGAAAGGGAATTGAGCTTTTTTGAAAGATGAACTTCAATACTTCAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26744</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>458256</contig_pos>
        <strand>+</strand>
        <context>CCGTCCTCCA[A/G]AAACACTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTTCAATACTTCAGGCGACGCGTTCATCACACGTGGTCTCCGTCCTCCA</left_flank>
        <right_flank>AAACACTTCTACACCCAGATGTGGATACTGGAATTGTTTTCTCTAATGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGACGATAAGGAAGTTCTCTAGTTATTGTGACTAGTGTTACTAGAAAACAGAGAAGCCTATATAAAAGAATGTCTGGTGAAAATTGTTTATACCGATTCAAAAATGAGTGTGTTCATCGTCGCATTTTTCTCATTCATAGCCGCGTACATTGTTCATTTCTACTGGAAGGTTAGCAAATATCCAAAAGGACCACTTCCACTTCCATTTGTCGGGAATTTACTACAGGTTTGTTCATTGGTCTGGGATGTAAAGAAAAATAAAGTTTAGTTCCCCGCAACCCACATACAAACGTTTTATGACGATTTGGCCAAAACCTATGGTCCATGCTTCACACTTTGGACACCAACGCCGTCGGTAGTCATCACGGATTATGATCATTTAAAGGAAGCTTTTGTGACACAAGGTACTGACTTGTTTGGAAAGGGAATTGAGCTTTTTTGAAAGATGAACTTCAATACTTCAGGCGACGCGTTCATCACACGTGGTCTCCGTCCTCCAGAAACACTTCTACACCCAGATGTGGATACTGGAATTGTTTTCTCTAATGCAGATACTTGGAGAGTTCAAAGAAGAACTTCATTGAAAATTCTCCGAGATTTTGGACTTGGCCGAAACTTGATGGAAGAGCAAGTGACACGATCGGTCCATGAAATGCTCCAACAGCTGGATAACATCAAGGATAAAACGGATGTTGATATGTACTGGCCTATTCAGCTTTGTGTCGGAAATGTGATCAATGAGAGCTTGTTCGGCTATCACTATAGTTATAAAGACACGGAAAAATTTCAAAAGTTTGTGATGATTGTGGATAGACACTTGAAAAATCTTTCTGGTCGTCCACAACTTTTGATCGCTGCCTGGCCGTGGTTAAGACATGTCCCAATCATTGGAGAAATGGGTTATCATAGCATCAAAAGAAATATTAAAACGTAAGTTTTTAAAAAACCTGGAATATATCAGATGGGATCTTTTCAGTACCACAAGTTCATCGAGGATGAG</canonical>
            <polymorphic>AGACGATAAGGAAGTTCTCTAGTTATTGTGACTAGTGTTACTAGAAAACAGAGAAGCCTATATAAAAGAATGTCTGGTGAAAATTGTTTATACCGATTCAAAAATGAGTGTGTTCATCGTCGCATTTTTCTCATTCATAGCCGCGTACATTGTTCATTTCTACTGGAAGGTTAGCAAATATCCAAAAGGACCACTTCCACTTCCATTTGTCGGGAATTTACTACAGGTTTGTTCATTGGTCTGGGATGTAAAGAAAAATAAAGTTTAGTTCCCCGCAACCCACATACAAACGTTTTATGACGATTTGGCCAAAACCTATGGTCCATGCTTCACACTTTGGACACCAACGCCGTCGGTAGTCATCACGGATTATGATCATTTAAAGGAAGCTTTTGTGACACAAGGTACTGACTTGTTTGGAAAGGGAATTGAGCTTTTTTGAAAGATGAACTTCAATACTTCAGGCGACGCGTTCATCACACGTGGTCTCCGTCCTCCARAAACACTTCTACACCCAGATGTGGATACTGGAATTGTTTTCTCTAATGCAGATACTTGGAGAGTTCAAAGAAGAACTTCATTGAAAATTCTCCGAGATTTTGGACTTGGCCGAAACTTGATGGAAGAGCAAGTGACACGATCGGTCCATGAAATGCTCCAACAGCTGGATAACATCAAGGATAAAACGGATGTTGATATGTACTGGCCTATTCAGCTTTGTGTCGGAAATGTGATCAATGAGAGCTTGTTCGGCTATCACTATAGTTATAAAGACACGGAAAAATTTCAAAAGTTTGTGATGATTGTGGATAGACACTTGAAAAATCTTTCTGGTCGTCCACAACTTTTGATCGCTGCCTGGCCGTGGTTAAGACATGTCCCAATCATTGGAGAAATGGGTTATCATAGCATCAAAAGAAATATTAAAACGTAAGTTTTTAAAAAACCTGGAATATATCAGATGGGATCTTTTCAGTACCACAAGTTCATCGAGGATGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>504 217 209 70</canonical_bands>
                <polymorphic_bands>574 217 209</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>503 286 211</canonical_bands>
                <polymorphic_bands>789 211</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGCTTCACACTTTGGACAC</pcr_primer_p1>
		<pcr_primer_p2>TCTTTGAACTCTCCAAGTATCTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATGCTTCACACTTTGGACACCAACGCCGTCGGTAGTCATCACGGATTATGATCATTTAAAGGAAGCTTTTGTGACACAAGGTACTGACTTGTTTGGAAAGGGAATTGAGCTTTTTTGAAAGATGAACTTCAATACTTCAGGCGACGCGTTCATCACACGTGGTCTCCGTCCTCCAGAAACACTTCTACACCCAGATGTGGATACTGGAATTGTTTTCTCTAATGCAGATACTTGGAGAGTTCAAAGA</canonical_amplicon>
		<polymorphic_amplicon>ATGCTTCACACTTTGGACACCAACGCCGTCGGTAGTCATCACGGATTATGATCATTTAAAGGAAGCTTTTGTGACACAAGGTACTGACTTGTTTGGAAAGGGAATTGAGCTTTTTTGAAAGATGAACTTCAATACTTCAGGCGACGCGTTCATCACACGTGGTCTCCGTCCTCCARAAACACTTCTACACCCAGATGTGGATACTGGAATTGTTTTCTCTAATGCAGATACTTGGAGAGTTCAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26745</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>462307</contig_pos>
        <strand>+</strand>
        <context>TGAATTTCTG[A/G]AAAAAAAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTGAACATTTCTTGATTTGTATATTATGGGTTATATTAATGAATTTCTG</left_flank>
        <right_flank>AAAAAAAAGAAAAAAAGTTGTGGGTTTAAATCCAGATTGTATTGCGTTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAGAACTGCATATGACAAAACTTGCTACGAATTGCCCCATTATATCTATCACTCAACTGTTATTCAGTTGGATTGGACACGCTCACGATTGCATCACCGAAGACATAGGGAGCATCTGAACCATGAATTGTTGCTTTGAATGACAGTGTTGCAGATTGAGGGTCTATTTCTCTTTCAGTGTTGAAGTAATCAAAAGATGCCATTCTTTAAGAATTGGATATTCAGGCAGTGCTAGAAAAAATCATCCCATTCACTATCGGAAAGAGAAACTGTTTTGGAGAAGGATTGGCTCGAATGGAACTCTTCCTGATTTTCAGTGCATTGATCCAGAAGTACGAATTTTGTGCCAAAATCGAGCATTGACTTGTCACCAGTCTGGGGAGCAGCACTTACTTCAAAACAAACTTTATCAATGTCAACTGATTTCTCAAACTGCTTGAGTTCTCAAAGTGAACATTTCTTGATTTGTATATTATGGGTTATATTAATGAATTTCTGAAAAAAAAAGAAAAAAAGTTGTGGGTTTAAATCCAGATTGTATTGCGTTGGTCAGCCGCGGGCGTCGACCATGAGCCGGTAGCGGAGAGACACTTGAAAAGAAGGTGCTTTTCGTCTTGCGGTTCATTTCCTGTACGGAAGCTGTCTACTAGTGGTTCTTCATAATATTGAGAAAAAAGTGTTATCCTTTTCTCACGGAATTGGTCTCATACAGTTGATTAACCAGTTAATATTCTTACATTTTTAGTTTGCATTTCAAGATGAATATTGATGAACCGTATATTCACTACTCCAGATATGCTCAGAATATTGCACTTGCCGGTTTTTTCCTAACAACTTTCTTATGTTCCCTTCTCGTTTATCTGACAATATTTGAAATAACTCGTAACTTTGGAAGTTATAAAAACCTACTGGTAACATTTGCGAGTTTTGGAATATTTTTTGCTTCAACGGAGGTTGTTCTAAAATTGGTAATTTGGGTGGTAATATGATCATCATGAA</canonical>
            <polymorphic>TTAGAACTGCATATGACAAAACTTGCTACGAATTGCCCCATTATATCTATCACTCAACTGTTATTCAGTTGGATTGGACACGCTCACGATTGCATCACCGAAGACATAGGGAGCATCTGAACCATGAATTGTTGCTTTGAATGACAGTGTTGCAGATTGAGGGTCTATTTCTCTTTCAGTGTTGAAGTAATCAAAAGATGCCATTCTTTAAGAATTGGATATTCAGGCAGTGCTAGAAAAAATCATCCCATTCACTATCGGAAAGAGAAACTGTTTTGGAGAAGGATTGGCTCGAATGGAACTCTTCCTGATTTTCAGTGCATTGATCCAGAAGTACGAATTTTGTGCCAAAATCGAGCATTGACTTGTCACCAGTCTGGGGAGCAGCACTTACTTCAAAACAAACTTTATCAATGTCAACTGATTTCTCAAACTGCTTGAGTTCTCAAAGTGAACATTTCTTGATTTGTATATTATGGGTTATATTAATGAATTTCTGRAAAAAAAAGAAAAAAAGTTGTGGGTTTAAATCCAGATTGTATTGCGTTGGTCAGCCGCGGGCGTCGACCATGAGCCGGTAGCGGAGAGACACTTGAAAAGAAGGTGCTTTTCGTCTTGCGGTTCATTTCCTGTACGGAAGCTGTCTACTAGTGGTTCTTCATAATATTGAGAAAAAAGTGTTATCCTTTTCTCACGGAATTGGTCTCATACAGTTGATTAACCAGTTAATATTCTTACATTTTTAGTTTGCATTTCAAGATGAATATTGATGAACCGTATATTCACTACTCCAGATATGCTCAGAATATTGCACTTGCCGGTTTTTTCCTAACAACTTTCTTATGTTCCCTTCTCGTTTATCTGACAATATTTGAAATAACTCGTAACTTTGGAAGTTATAAAAACCTACTGGTAACATTTGCGAGTTTTGGAATATTTTTTGCTTCAACGGAGGTTGTTCTAAAATTGGTAATTTGGGTGGTAATATGATCATCATGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>305 238 142 137 118 60</canonical_bands>
                <polymorphic_bands>543 142 137 118 60</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGTCAACTGATTTCTCAAACT</pcr_primer_p1>
		<pcr_primer_p2>ATGAAGAACCACTAGTAGACAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATGTCAACTGATTTCTCAAACTGCTTGAGTTCTCAAAGTGAACATTTCTTGATTTGTATATTATGGGTTATATTAATGAATTTCTGAAAAAAAAAGAAAAAAAGTTGTGGGTTTAAATCCAGATTGTATTGCGTTGGTCAGCCGCGGGCGTCGACCATGAGCCGGTAGCGGAGAGACACTTGAAAAGAAGGTGCTTTTCGTCTTGCGGTTCATTTCCTGTACGGAAGCTGTCTACTAGTGGTTCTTCAT</canonical_amplicon>
		<polymorphic_amplicon>AATGTCAACTGATTTCTCAAACTGCTTGAGTTCTCAAAGTGAACATTTCTTGATTTGTATATTATGGGTTATATTAATGAATTTCTGRAAAAAAAAGAAAAAAAGTTGTGGGTTTAAATCCAGATTGTATTGCGTTGGTCAGCCGCGGGCGTCGACCATGAGCCGGTAGCGGAGAGACACTTGAAAAGAAGGTGCTTTTCGTCTTGCGGTTCATTTCCTGTACGGAAGCTGTCTACTAGTGGTTCTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26746</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>462507</contig_pos>
        <strand>+</strand>
        <context>TCTCACGGAA[A/T]TGGTYTCATA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTGGTTCTTCATAATATTGAGAAAAAAGTGTTATCCTTTTCTCACGGAA</left_flank>
        <right_flank>TGGTCTCATACAGTTGATTAACCAGTTAATATTCTTACATTTTTAGTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCATTCTTTAAGAATTGGATATTCAGGCAGTGCTAGAAAAAATCATCCCATTCACTATCGGAAAGAGAAACTGTTTTGGAGAAGGATTGGCTCGAATGGAACTCTTCCTGATTTTCAGTGCATTGATCCAGAAGTACGAATTTTGTGCCAAAATCGAGCATTGACTTGTCACCAGTCTGGGGAGCAGCACTTACTTCAAAACAAACTTTATCAATGTCAACTGATTTCTCAAACTGCTTGAGTTCTCAAAGTGAACATTTCTTGATTTGTATATTATGGGTTATATTAATGAATTTCTGAAAAAAAAAGAAAAAAAGTTGTGGGTTTAAATCCAGATTGTATTGCGTTGGTCAGCCGCGGGCGTCGACCATGAGCCGGTAGCGGAGAGACACTTGAAAAGAAGGTGCTTTTCGTCTTGCGGTTCATTTCCTGTACGGAAGCTGTCTACTAGTGGTTCTTCATAATATTGAGAAAAAAGTGTTATCCTTTTCTCACGGAATTGGTCTCATACAGTTGATTAACCAGTTAATATTCTTACATTTTTAGTTTGCATTTCAAGATGAATATTGATGAACCGTATATTCACTACTCCAGATATGCTCAGAATATTGCACTTGCCGGTTTTTTCCTAACAACTTTCTTATGTTCCCTTCTCGTTTATCTGACAATATTTGAAATAACTCGTAACTTTGGAAGTTATAAAAACCTACTGGTAACATTTGCGAGTTTTGGAATATTTTTTGCTTCAACGGAGGTTGTTCTAAAATTGGTAATTTGGGTGGTAATATGATCATCATGAAGGTAATAAGCTCAGAATGTCTACTCTCACAATGCTGGCTGGATTTTTTATGCCATCAGTCGCCCATTCGACCTGAGTACGTCTTTTATGAATTGGTTGTTACCTTTATATACGGGGAGCTATTCCCTAACAACATCCATGTTGTCTGTACAGTTTGTGTACCGGTATTGTGCACTTTTTCAGTAAGTTGCCGCAAACATT</canonical>
            <polymorphic>CCATTCTTTAAGAATTGGATATTCAGGCAGTGCTAGAAAAAATCATCCCATTCACTATCGGAAAGAGAAACTGTTTTGGAGAAGGATTGGCTCGAATGGAACTCTTCCTGATTTTCAGTGCATTGATCCAGAAGTACGAATTTTGTGCCAAAATCGAGCATTGACTTGTCACCAGTCTGGGGAGCAGCACTTACTTCAAAACAAACTTTATCAATGTCAACTGATTTCTCAAACTGCTTGAGTTCTCAAAGTGAACATTTCTTGATTTGTATATTATGGGTTATATTAATGAATTTCTGAAAAAAAAAGAAAAAAAGTTGTGGGTTTAAATCCAGATTGTATTGCGTTGGTCAGCCGCGGGCGTCGACCATGAGCCGGTAGCGGAGAGACACTTGAAAAGAAGGTGCTTTTCGTCTTGCGGTTCATTTCCTGTACGGAAGCTGTCTACTAGTGGTTCTTCATAATATTGAGAAAAAAGTGTTATCCTTTTCTCACGGAAWTGGTCTCATACAGTTGATTAACCAGTTAATATTCTTACATTTTTAGTTTGCATTTCAAGATGAATATTGATGAACCGTATATTCACTACTCCAGATATGCTCAGAATATTGCACTTGCCGGTTTTTTCCTAACAACTTTCTTATGTTCCCTTCTCGTTTATCTGACAATATTTGAAATAACTCGTAACTTTGGAAGTTATAAAAACCTACTGGTAACATTTGCGAGTTTTGGAATATTTTTTGCTTCAACGGAGGTTGTTCTAAAATTGGTAATTTGGGTGGTAATATGATCATCATGAAGGTAATAAGCTCAGAATGTCTACTCTCACAATGCTGGCTGGATTTTTTATGCCATCAGTCGCCCATTCGACCTGAGTACGTCTTTTATGAATTGGTTGTTACCTTTATATACGGGGAGCTATTCCCTAACAACATCCATGTTGTCTGTACAGTTTGTGTACCGGTATTGTGCACTTTTTCAGTAAGTTGCCGCAAACATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>267 206 153 126 118 111 12 7</canonical_bands>
                <polymorphic_bands>473 153 126 118 111 12 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAAGGTGCTTTTCGTCTT</pcr_primer_p1>
		<pcr_primer_p2>AACATAAGAAAGTTGTTAGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAAGGTGCTTTTCGTCTTGCGGTTCATTTCCTGTACGGAAGCTGTCTACTAGTGGTTCTTCATAATATTGAGAAAAAAGTGTTATCCTTTTCTCACGGAATTGGTCTCATACAGTTGATTAACCAGTTAATATTCTTACATTTTTAGTTTGCATTTCAAGATGAATATTGATGAACCGTATATTCACTACTCCAGATATGCTCAGAATATTGCACTTGCCGGTTTTTTCCTAACAACTTTCTTATGTT</canonical_amplicon>
		<polymorphic_amplicon>AAGAAGGTGCTTTTCGTCTTGCGGTTCATTTCCTGTACGGAAGCTGTCTACTAGTGGTTCTTCATAATATTGAGAAAAAAGTGTTATCCTTTTCTCACGGAAWTGGTCTCATACAGTTGATTAACCAGTTAATATTCTTACATTTTTAGTTTGCATTTCAAGATGAATATTGATGAACCGTATATTCACTACTCCAGATATGCTCAGAATATTGCACTTGCCGGTTTTTTCCTAACAACTTTCTTATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26747</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>462512</contig_pos>
        <strand>+</strand>
        <context>CGGAAWTGGT[C/T]TCATACAGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTTCATAATATTGAGAAAAAAGTGTTATCCTTTTCTCACGGAATTGGT</left_flank>
        <right_flank>TCATACAGTTGATTAACCAGTTAATATTCTTACATTTTTAGTTTGCATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTAAGAATTGGATATTCAGGCAGTGCTAGAAAAAATCATCCCATTCACTATCGGAAAGAGAAACTGTTTTGGAGAAGGATTGGCTCGAATGGAACTCTTCCTGATTTTCAGTGCATTGATCCAGAAGTACGAATTTTGTGCCAAAATCGAGCATTGACTTGTCACCAGTCTGGGGAGCAGCACTTACTTCAAAACAAACTTTATCAATGTCAACTGATTTCTCAAACTGCTTGAGTTCTCAAAGTGAACATTTCTTGATTTGTATATTATGGGTTATATTAATGAATTTCTGAAAAAAAAAGAAAAAAAGTTGTGGGTTTAAATCCAGATTGTATTGCGTTGGTCAGCCGCGGGCGTCGACCATGAGCCGGTAGCGGAGAGACACTTGAAAAGAAGGTGCTTTTCGTCTTGCGGTTCATTTCCTGTACGGAAGCTGTCTACTAGTGGTTCTTCATAATATTGAGAAAAAAGTGTTATCCTTTTCTCACGGAATTGGTCTCATACAGTTGATTAACCAGTTAATATTCTTACATTTTTAGTTTGCATTTCAAGATGAATATTGATGAACCGTATATTCACTACTCCAGATATGCTCAGAATATTGCACTTGCCGGTTTTTTCCTAACAACTTTCTTATGTTCCCTTCTCGTTTATCTGACAATATTTGAAATAACTCGTAACTTTGGAAGTTATAAAAACCTACTGGTAACATTTGCGAGTTTTGGAATATTTTTTGCTTCAACGGAGGTTGTTCTAAAATTGGTAATTTGGGTGGTAATATGATCATCATGAAGGTAATAAGCTCAGAATGTCTACTCTCACAATGCTGGCTGGATTTTTTATGCCATCAGTCGCCCATTCGACCTGAGTACGTCTTTTATGAATTGGTTGTTACCTTTATATACGGGGAGCTATTCCCTAACAACATCCATGTTGTCTGTACAGTTTGTGTACCGGTATTGTGCACTTTTTCAGTAAGTTGCCGCAAACATTCTAAT</canonical>
            <polymorphic>CTTTAAGAATTGGATATTCAGGCAGTGCTAGAAAAAATCATCCCATTCACTATCGGAAAGAGAAACTGTTTTGGAGAAGGATTGGCTCGAATGGAACTCTTCCTGATTTTCAGTGCATTGATCCAGAAGTACGAATTTTGTGCCAAAATCGAGCATTGACTTGTCACCAGTCTGGGGAGCAGCACTTACTTCAAAACAAACTTTATCAATGTCAACTGATTTCTCAAACTGCTTGAGTTCTCAAAGTGAACATTTCTTGATTTGTATATTATGGGTTATATTAATGAATTTCTGAAAAAAAAAGAAAAAAAGTTGTGGGTTTAAATCCAGATTGTATTGCGTTGGTCAGCCGCGGGCGTCGACCATGAGCCGGTAGCGGAGAGACACTTGAAAAGAAGGTGCTTTTCGTCTTGCGGTTCATTTCCTGTACGGAAGCTGTCTACTAGTGGTTCTTCATAATATTGAGAAAAAAGTGTTATCCTTTTCTCACGGAATTGGTYTCATACAGTTGATTAACCAGTTAATATTCTTACATTTTTAGTTTGCATTTCAAGATGAATATTGATGAACCGTATATTCACTACTCCAGATATGCTCAGAATATTGCACTTGCCGGTTTTTTCCTAACAACTTTCTTATGTTCCCTTCTCGTTTATCTGACAATATTTGAAATAACTCGTAACTTTGGAAGTTATAAAAACCTACTGGTAACATTTGCGAGTTTTGGAATATTTTTTGCTTCAACGGAGGTTGTTCTAAAATTGGTAATTTGGGTGGTAATATGATCATCATGAAGGTAATAAGCTCAGAATGTCTACTCTCACAATGCTGGCTGGATTTTTTATGCCATCAGTCGCCCATTCGACCTGAGTACGTCTTTTATGAATTGGTTGTTACCTTTATATACGGGGAGCTATTCCCTAACAACATCCATGTTGTCTGTACAGTTTGTGTACCGGTATTGTGCACTTTTTCAGTAAGTTGCCGCAAACATTCTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAGGTGCTTTTCGTCTT</pcr_primer_p1>
		<pcr_primer_p2>AACATAAGAAAGTTGTTAGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAAGGTGCTTTTCGTCTTGCGGTTCATTTCCTGTACGGAAGCTGTCTACTAGTGGTTCTTCATAATATTGAGAAAAAAGTGTTATCCTTTTCTCACGGAATTGGTCTCATACAGTTGATTAACCAGTTAATATTCTTACATTTTTAGTTTGCATTTCAAGATGAATATTGATGAACCGTATATTCACTACTCCAGATATGCTCAGAATATTGCACTTGCCGGTTTTTTCCTAACAACTTTCTTATGTT</canonical_amplicon>
		<polymorphic_amplicon>AAGAAGGTGCTTTTCGTCTTGCGGTTCATTTCCTGTACGGAAGCTGTCTACTAGTGGTTCTTCATAATATTGAGAAAAAAGTGTTATCCTTTTCTCACGGAATTGGTYTCATACAGTTGATTAACCAGTTAATATTCTTACATTTTTAGTTTGCATTTCAAGATGAATATTGATGAACCGTATATTCACTACTCCAGATATGCTCAGAATATTGCACTTGCCGGTTTTTTCCTAACAACTTTCTTATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26748</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>462545</contig_pos>
        <strand>+</strand>
        <context>AATATTCTTA[A/C]ATTTTTAGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCTCACGGAATTGGTCTCATACAGTTGATTAACCAGTTAATATTCTTA</left_flank>
        <right_flank>ATTTTTAGTTTGCATTTCAAGATGAATATTGATGAACCGTATATTCACTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATCATCCCATTCACTATCGGAAAGAGAAACTGTTTTGGAGAAGGATTGGCTCGAATGGAACTCTTCCTGATTTTCAGTGCATTGATCCAGAAGTACGAATTTTGTGCCAAAATCGAGCATTGACTTGTCACCAGTCTGGGGAGCAGCACTTACTTCAAAACAAACTTTATCAATGTCAACTGATTTCTCAAACTGCTTGAGTTCTCAAAGTGAACATTTCTTGATTTGTATATTATGGGTTATATTAATGAATTTCTGAAAAAAAAAGAAAAAAAGTTGTGGGTTTAAATCCAGATTGTATTGCGTTGGTCAGCCGCGGGCGTCGACCATGAGCCGGTAGCGGAGAGACACTTGAAAAGAAGGTGCTTTTCGTCTTGCGGTTCATTTCCTGTACGGAAGCTGTCTACTAGTGGTTCTTCATAATATTGAGAAAAAAGTGTTATCCTTTTCTCACGGAATTGGTCTCATACAGTTGATTAACCAGTTAATATTCTTACATTTTTAGTTTGCATTTCAAGATGAATATTGATGAACCGTATATTCACTACTCCAGATATGCTCAGAATATTGCACTTGCCGGTTTTTTCCTAACAACTTTCTTATGTTCCCTTCTCGTTTATCTGACAATATTTGAAATAACTCGTAACTTTGGAAGTTATAAAAACCTACTGGTAACATTTGCGAGTTTTGGAATATTTTTTGCTTCAACGGAGGTTGTTCTAAAATTGGTAATTTGGGTGGTAATATGATCATCATGAAGGTAATAAGCTCAGAATGTCTACTCTCACAATGCTGGCTGGATTTTTTATGCCATCAGTCGCCCATTCGACCTGAGTACGTCTTTTATGAATTGGTTGTTACCTTTATATACGGGGAGCTATTCCCTAACAACATCCATGTTGTCTGTACAGTTTGTGTACCGGTATTGTGCACTTTTTCAGTAAGTTGCCGCAAACATTCTAATAGAACGGCACCCAAAGCGTCCACTTTGAGCTTA</canonical>
            <polymorphic>AAAATCATCCCATTCACTATCGGAAAGAGAAACTGTTTTGGAGAAGGATTGGCTCGAATGGAACTCTTCCTGATTTTCAGTGCATTGATCCAGAAGTACGAATTTTGTGCCAAAATCGAGCATTGACTTGTCACCAGTCTGGGGAGCAGCACTTACTTCAAAACAAACTTTATCAATGTCAACTGATTTCTCAAACTGCTTGAGTTCTCAAAGTGAACATTTCTTGATTTGTATATTATGGGTTATATTAATGAATTTCTGAAAAAAAAAGAAAAAAAGTTGTGGGTTTAAATCCAGATTGTATTGCGTTGGTCAGCCGCGGGCGTCGACCATGAGCCGGTAGCGGAGAGACACTTGAAAAGAAGGTGCTTTTCGTCTTGCGGTTCATTTCCTGTACGGAAGCTGTCTACTAGTGGTTCTTCATAATATTGAGAAAAAAGTGTTATCCTTTTCTCACGGAATTGGTCTCATACAGTTGATTAACCAGTTAATATTCTTAMATTTTTAGTTTGCATTTCAAGATGAATATTGATGAACCGTATATTCACTACTCCAGATATGCTCAGAATATTGCACTTGCCGGTTTTTTCCTAACAACTTTCTTATGTTCCCTTCTCGTTTATCTGACAATATTTGAAATAACTCGTAACTTTGGAAGTTATAAAAACCTACTGGTAACATTTGCGAGTTTTGGAATATTTTTTGCTTCAACGGAGGTTGTTCTAAAATTGGTAATTTGGGTGGTAATATGATCATCATGAAGGTAATAAGCTCAGAATGTCTACTCTCACAATGCTGGCTGGATTTTTTATGCCATCAGTCGCCCATTCGACCTGAGTACGTCTTTTATGAATTGGTTGTTACCTTTATATACGGGGAGCTATTCCCTAACAACATCCATGTTGTCTGTACAGTTTGTGTACCGGTATTGTGCACTTTTTCAGTAAGTTGCCGCAAACATTCTAATAGAACGGCACCCAAAGCGTCCACTTTGAGCTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAGGTGCTTTTCGTCTT</pcr_primer_p1>
		<pcr_primer_p2>AACATAAGAAAGTTGTTAGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAAGGTGCTTTTCGTCTTGCGGTTCATTTCCTGTACGGAAGCTGTCTACTAGTGGTTCTTCATAATATTGAGAAAAAAGTGTTATCCTTTTCTCACGGAATTGGTCTCATACAGTTGATTAACCAGTTAATATTCTTACATTTTTAGTTTGCATTTCAAGATGAATATTGATGAACCGTATATTCACTACTCCAGATATGCTCAGAATATTGCACTTGCCGGTTTTTTCCTAACAACTTTCTTATGTT</canonical_amplicon>
		<polymorphic_amplicon>AAGAAGGTGCTTTTCGTCTTGCGGTTCATTTCCTGTACGGAAGCTGTCTACTAGTGGTTCTTCATAATATTGAGAAAAAAGTGTTATCCTTTTCTCACGGAATTGGTCTCATACAGTTGATTAACCAGTTAATATTCTTAMATTTTTAGTTTGCATTTCAAGATGAATATTGATGAACCGTATATTCACTACTCCAGATATGCTCAGAATATTGCACTTGCCGGTTTTTTCCTAACAACTTTCTTATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26749</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>462574</contig_pos>
        <strand>+</strand>
        <context>AAGATGAATA[C/T]TGATGAACCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTAACCAGTTAATATTCTTACATTTTTAGTTTGCATTTCAAGATGAATA</left_flank>
        <right_flank>TGATGAACCGTATATTCACTACTCCAGATATGCTCAGAATATTGCACTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTGTTTTGGAGAAGGATTGGCTCGAATGGAACTCTTCCTGATTTTCAGTGCATTGATCCAGAAGTACGAATTTTGTGCCAAAATCGAGCATTGACTTGTCACCAGTCTGGGGAGCAGCACTTACTTCAAAACAAACTTTATCAATGTCAACTGATTTCTCAAACTGCTTGAGTTCTCAAAGTGAACATTTCTTGATTTGTATATTATGGGTTATATTAATGAATTTCTGAAAAAAAAAGAAAAAAAGTTGTGGGTTTAAATCCAGATTGTATTGCGTTGGTCAGCCGCGGGCGTCGACCATGAGCCGGTAGCGGAGAGACACTTGAAAAGAAGGTGCTTTTCGTCTTGCGGTTCATTTCCTGTACGGAAGCTGTCTACTAGTGGTTCTTCATAATATTGAGAAAAAAGTGTTATCCTTTTCTCACGGAATTGGTCTCATACAGTTGATTAACCAGTTAATATTCTTACATTTTTAGTTTGCATTTCAAGATGAATATTGATGAACCGTATATTCACTACTCCAGATATGCTCAGAATATTGCACTTGCCGGTTTTTTCCTAACAACTTTCTTATGTTCCCTTCTCGTTTATCTGACAATATTTGAAATAACTCGTAACTTTGGAAGTTATAAAAACCTACTGGTAACATTTGCGAGTTTTGGAATATTTTTTGCTTCAACGGAGGTTGTTCTAAAATTGGTAATTTGGGTGGTAATATGATCATCATGAAGGTAATAAGCTCAGAATGTCTACTCTCACAATGCTGGCTGGATTTTTTATGCCATCAGTCGCCCATTCGACCTGAGTACGTCTTTTATGAATTGGTTGTTACCTTTATATACGGGGAGCTATTCCCTAACAACATCCATGTTGTCTGTACAGTTTGTGTACCGGTATTGTGCACTTTTTCAGTAAGTTGCCGCAAACATTCTAATAGAACGGCACCCAAAGCGTCCACTTTGAGCTTACACTTCTCATTTCCTGTAAGGTATTGCAA</canonical>
            <polymorphic>AAACTGTTTTGGAGAAGGATTGGCTCGAATGGAACTCTTCCTGATTTTCAGTGCATTGATCCAGAAGTACGAATTTTGTGCCAAAATCGAGCATTGACTTGTCACCAGTCTGGGGAGCAGCACTTACTTCAAAACAAACTTTATCAATGTCAACTGATTTCTCAAACTGCTTGAGTTCTCAAAGTGAACATTTCTTGATTTGTATATTATGGGTTATATTAATGAATTTCTGAAAAAAAAAGAAAAAAAGTTGTGGGTTTAAATCCAGATTGTATTGCGTTGGTCAGCCGCGGGCGTCGACCATGAGCCGGTAGCGGAGAGACACTTGAAAAGAAGGTGCTTTTCGTCTTGCGGTTCATTTCCTGTACGGAAGCTGTCTACTAGTGGTTCTTCATAATATTGAGAAAAAAGTGTTATCCTTTTCTCACGGAATTGGTCTCATACAGTTGATTAACCAGTTAATATTCTTACATTTTTAGTTTGCATTTCAAGATGAATAYTGATGAACCGTATATTCACTACTCCAGATATGCTCAGAATATTGCACTTGCCGGTTTTTTCCTAACAACTTTCTTATGTTCCCTTCTCGTTTATCTGACAATATTTGAAATAACTCGTAACTTTGGAAGTTATAAAAACCTACTGGTAACATTTGCGAGTTTTGGAATATTTTTTGCTTCAACGGAGGTTGTTCTAAAATTGGTAATTTGGGTGGTAATATGATCATCATGAAGGTAATAAGCTCAGAATGTCTACTCTCACAATGCTGGCTGGATTTTTTATGCCATCAGTCGCCCATTCGACCTGAGTACGTCTTTTATGAATTGGTTGTTACCTTTATATACGGGGAGCTATTCCCTAACAACATCCATGTTGTCTGTACAGTTTGTGTACCGGTATTGTGCACTTTTTCAGTAAGTTGCCGCAAACATTCTAATAGAACGGCACCCAAAGCGTCCACTTTGAGCTTACACTTCTCATTTCCTGTAAGGTATTGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>398 332 66 65 62 42 35</canonical_bands>
                <polymorphic_bands>398 332 77 66 65 62</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAAGGTGCTTTTCGTCTT</pcr_primer_p1>
		<pcr_primer_p2>AACATAAGAAAGTTGTTAGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAAGGTGCTTTTCGTCTTGCGGTTCATTTCCTGTACGGAAGCTGTCTACTAGTGGTTCTTCATAATATTGAGAAAAAAGTGTTATCCTTTTCTCACGGAATTGGTCTCATACAGTTGATTAACCAGTTAATATTCTTACATTTTTAGTTTGCATTTCAAGATGAATATTGATGAACCGTATATTCACTACTCCAGATATGCTCAGAATATTGCACTTGCCGGTTTTTTCCTAACAACTTTCTTATGTT</canonical_amplicon>
		<polymorphic_amplicon>AAGAAGGTGCTTTTCGTCTTGCGGTTCATTTCCTGTACGGAAGCTGTCTACTAGTGGTTCTTCATAATATTGAGAAAAAAGTGTTATCCTTTTCTCACGGAATTGGTCTCATACAGTTGATTAACCAGTTAATATTCTTACATTTTTAGTTTGCATTTCAAGATGAATAYTGATGAACCGTATATTCACTACTCCAGATATGCTCAGAATATTGCACTTGCCGGTTTTTTCCTAACAACTTTCTTATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26750</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>514849</contig_pos>
        <strand></strand>
        <context>cgcatttaat[T/C]agtggacact</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAATTGGGCAAACTAAACACAATTTGGTGATATTAAGACACGCATTTAAT</left_flank>
        <right_flank>AGTGGACACTTTTTCGATAGCTCTTCTAGAAAATGAGATGATTAAGGTCA</right_flank>
        <qual_score>35</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCATACATTGTGCCTGGTGGATCGGTTTTCAGCTCGATGTCTGAAGCACCGAATGGCGTGCGATTGACCCAGATTGAGGATTGACGGCCTGCATGAGAGAGTTGCATGATTGCTAGAGCGCCATCGTGCTTCATGTTTTTGGCCCATTGAGCGTAGAGGGATCTTCGTTCTTCACTGTCCCCTTCTTCGAAAATGATCGCGTTGCCAATAGCTTCAAGGTTGGTCTGAAAAACATTTGAGAACCTGATGTGCTTGTATAAGAGGAGAGTTTTGGTCTAGGATCCGAAAAGTGTGTAGGATCCAAAGCAAAAATTTTGGTCACGGTTGGAAGGAGGCCTAGTTTTCTAGAATTTCAGATGGCCTAGGATCCGACTGCCACCTTAGCTAGGACTCGGATTACTAGACTTACACTTTGACCTCAATTATCTCAATTTCGGTAGGAGATATCGAAATTGGGCAAACTAAACACAATTTGGTGATATTAAGACACGCATTTAATTAGTGGACACTTTTTCGATAGCTCTTCTAGAAAATGAGATGATTAAGGTCAAAGTTTGGGACCATCAAACAAATTGAAATTCAAACTAACCGGATCAACAACCACATTTCCAGTGATAATCATTCCATATTTTCCACGTCCCCATTTATCATAGATATTCAGAATTTCTTTGGTTGGCAGTCCATGCTTCTTCGGATTCTGTGGATCATACGTCGACAATCTCTCGGTCATTGCCGCCTTCATGAATCGGTTCGCAGCGGTTCGTCCATTTGGAAATTTGAGTTTCTCGCCAAGAATTTTTGAGCTAACGATAGCAGCATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGATGGAGATTCTGAAAGGAACGGCGCTATTTAAACGAGATGGGAAATGGGAGGGAGAGGAGGATACATCACGGTCGGCACAAAACACAAAATCTAAGAATCTCATGTTGAGTACACTATTCATTTTTGTGACCTGCGTCGGTGGCCC</canonical>
            <polymorphic>CCATACATTGTGCCTGGTGGATCGGTTTTCAGCTCGATGTCTGAAGCACCGAATGGCGTGCGATTGACCCAGATTGAGGATTGACGGCCTGCATGAGAGAGTTGCATGATTGCTAGAGCGCCATCGTGCTTCATGTTTTTGGCCCATTGAGCGTAGAGGGATCTTCGTTCTTCACTGTCCCCTTCTTCGAAAATGATCGCGTTGCCAATAGCTTCAAGGTTGGTCTGAAAAACATTTGAGAACCTGATGTGCTTGTATAAGAGGAGAGTTTTGGTCTAGGATCCGAAAAGTGTGTAGGATCCAAAGCAAAAATTTTGGTCACGGTTGGAAGGAGGCCTAGTTTTCTAGAATTTCAGATGGCCTAGGATCCGACTGCCACCTTAGCTAGGACTCGGATTACTAGACTTACACTTTGACCTCAATTATCTCAATTTCGGTAGGAGATATCGAAATTGGGCAAACTAAACACAATTTGGTGATATTAAGACACGCATTTAATYAGTGGACACTTTTTCGATAGCTCTTCTAGAAAATGAGATGATTAAGGTCAAAGTTTGGGACCATCAAACAAATTGAAATTCAAACTAACCGGATCAACAACCACATTTCCAGTGATAATCATTCCATATTTTCCACGTCCCCATTTATCATAGATATTCAGAATTTCTTTGGTTGGCAGTCCATGCTTCTTCGGATTCTGTGGATCATACGTCGACAATCTCTCGGTCATTGCCGCCTTCATGAATCGGTTCGCAGCGGTTCGTCCATTTGGAAATTTGAGTTTCTCGCCAAGAATTTTTGAGCTAACGATAGCAGCATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGATGGAGATTCTGAAAGGAACGGCGCTATTTAAACGAGATGGGAAATGGGAGGGAGAGGAGGATACATCACGGTCGGCACAAAACACAAAATCTAAGAATCTCATGTTGAGTACACTATTCATTTTTGTGACCTGCGTCGGTGGCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>310 207 112 85 74 72 38 27 21 20 19 9 6</canonical_bands>
                <polymorphic_bands>310 207 112 101 85 72 38 21 20 19 9 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGCCTAGTTTTCTAGAATTTCA</pcr_primer_p1>
		<pcr_primer_p2>GAATTTCAATTTGTTTGATGGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGGCCTAGTTTTCTAGAATTTCAGATGGCCTAGGATCCGACTGCCACCTTAGCTAGGACTCGGATTACTAGACTTACACTTTGACCTCAATTATCTCAATTTCGGTAGGAGATATCGAAATTGGGCAAACTAAACACAATTTGGTGATATTAAGACACGCATTTAATTAGTGGACACTTTTTCGATAGCTCTTCTAGAAAATGAGATGATTAAGGTCAAAGTTTGGGACCATCAAACAAATTGAAATTC</canonical_amplicon>
		<polymorphic_amplicon>AGGCCTAGTTTTCTAGAATTTCAGATGGCCTAGGATCCGACTGCCACCTTAGCTAGGACTCGGATTACTAGACTTACACTTTGACCTCAATTATCTCAATTTCGGTAGGAGATATCGAAATTGGGCAAACTAAACACAATTTGGTGATATTAAGACACGCATTTAATYAGTGGACACTTTTTCGATAGCTCTTCTAGAAAATGAGATGATTAAGGTCAAAGTTTGGGACCATCAAACAAATTGAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26751</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>514980</contig_pos>
        <strand>+</strand>
        <context>ATTCCATATT[C/T]TCCACGTCCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAACTAACCGGATCAACAACCACATTTCCAGTGATAATCATTCCATATT</left_flank>
        <right_flank>TCCACGTCCCCATTTATCATAGATATTCAGAATTTCTTTGGTTGGCAGTC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGTTTTTGGCCCATTGAGCGTAGAGGGATCTTCGTTCTTCACTGTCCCCTTCTTCGAAAATGATCGCGTTGCCAATAGCTTCAAGGTTGGTCTGAAAAACATTTGAGAACCTGATGTGCTTGTATAAGAGGAGAGTTTTGGTCTAGGATCCGAAAAGTGTGTAGGATCCAAAGCAAAAATTTTGGTCACGGTTGGAAGGAGGCCTAGTTTTCTAGAATTTCAGATGGCCTAGGATCCGACTGCCACCTTAGCTAGGACTCGGATTACTAGACTTACACTTTGACCTCAATTATCTCAATTTCGGTAGGAGATATCGAAATTGGGCAAACTAAACACAATTTGGTGATATTAAGACACGCATTTAATTAGTGGACACTTTTTCGATAGCTCTTCTAGAAAATGAGATGATTAAGGTCAAAGTTTGGGACCATCAAACAAATTGAAATTCAAACTAACCGGATCAACAACCACATTTCCAGTGATAATCATTCCATATTTTCCACGTCCCCATTTATCATAGATATTCAGAATTTCTTTGGTTGGCAGTCCATGCTTCTTCGGATTCTGTGGATCATACGTCGACAATCTCTCGGTCATTGCCGCCTTCATGAATCGGTTCGCAGCGGTTCGTCCATTTGGAAATTTGAGTTTCTCGCCAAGAATTTTTGAGCTAACGATAGCAGCATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGATGGAGATTCTGAAAGGAACGGCGCTATTTAAACGAGATGGGAAATGGGAGGGAGAGGAGGATACATCACGGTCGGCACAAAACACAAAATCTAAGAATCTCATGTTGAGTACACTATTCATTTTTGTGACCTGCGTCGGTGGCCCTGATCATCTTTCAGAGGGAAAGGGCAATTGTCAAAACATGAAACGCTAGATTTCTTAACTACAAAATATTTTGCGAAAAGGAAGAAATTTTTTTGAAAGAAGACATTTTTTTGAAATTTTGATGACAAAAA</canonical>
            <polymorphic>CATGTTTTTGGCCCATTGAGCGTAGAGGGATCTTCGTTCTTCACTGTCCCCTTCTTCGAAAATGATCGCGTTGCCAATAGCTTCAAGGTTGGTCTGAAAAACATTTGAGAACCTGATGTGCTTGTATAAGAGGAGAGTTTTGGTCTAGGATCCGAAAAGTGTGTAGGATCCAAAGCAAAAATTTTGGTCACGGTTGGAAGGAGGCCTAGTTTTCTAGAATTTCAGATGGCCTAGGATCCGACTGCCACCTTAGCTAGGACTCGGATTACTAGACTTACACTTTGACCTCAATTATCTCAATTTCGGTAGGAGATATCGAAATTGGGCAAACTAAACACAATTTGGTGATATTAAGACACGCATTTAATTAGTGGACACTTTTTCGATAGCTCTTCTAGAAAATGAGATGATTAAGGTCAAAGTTTGGGACCATCAAACAAATTGAAATTCAAACTAACCGGATCAACAACCACATTTCCAGTGATAATCATTCCATATTYTCCACGTCCCCATTTATCATAGATATTCAGAATTTCTTTGGTTGGCAGTCCATGCTTCTTCGGATTCTGTGGATCATACGTCGACAATCTCTCGGTCATTGCCGCCTTCATGAATCGGTTCGCAGCGGTTCGTCCATTTGGAAATTTGAGTTTCTCGCCAAGAATTTTTGAGCTAACGATAGCAGCATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGATGGAGATTCTGAAAGGAACGGCGCTATTTAAACGAGATGGGAAATGGGAGGGAGAGGAGGATACATCACGGTCGGCACAAAACACAAAATCTAAGAATCTCATGTTGAGTACACTATTCATTTTTGTGACCTGCGTCGGTGGCCCTGATCATCTTTCAGAGGGAAAGGGCAATTGTCAAAACATGAAACGCTAGATTTCTTAACTACAAAATATTTTGCGAAAAGGAAGAAATTTTTTTGAAAGAAGACATTTTTTTGAAATTTTGATGACAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGACCATCAAACAAATTGAA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCTTGGCGAGAAACTC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GGACCATCAAACAAATTGAAATTCAAACTAACCGGATCAACAACCACATTTCCAGTGATAATCATTCCATATTTTCCACGTCCCCATTTATCATAGATATTCAGAATTTCTTTGGTTGGCAGTCCATGCTTCTTCGGATTCTGTGGATCATACGTCGACAATCTCTCGGTCATTGCCGCCTTCATGAATCGGTTCGCAGCGGTTCGTCCATTTGGAAATTTGAGTTTCTCGCCAAGAATTT</canonical_amplicon>
		<polymorphic_amplicon>GGACCATCAAACAAATTGAAATTCAAACTAACCGGATCAACAACCACATTTCCAGTGATAATCATTCCATATTYTCCACGTCCCCATTTATCATAGATATTCAGAATTTCTTTGGTTGGCAGTCCATGCTTCTTCGGATTCTGTGGATCATACGTCGACAATCTCTCGGTCATTGCCGCCTTCATGAATCGGTTCGCAGCGGTTCGTCCATTTGGAAATTTGAGTTTCTCGCCAAGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26752</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>515083</contig_pos>
        <strand>+</strand>
        <context>CGGTCATTGC[C/T]GCCTTCATGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCTTCTTCGGATTCTGTGGATCATACGTCGACAATCTCTCGGTCATTGC</left_flank>
        <right_flank>GCCTTCATGAATCGGTTCGCAGCGGTTCGTCCATTTGGAAATTTGAGTTT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAGAACCTGATGTGCTTGTATAAGAGGAGAGTTTTGGTCTAGGATCCGAAAAGTGTGTAGGATCCAAAGCAAAAATTTTGGTCACGGTTGGAAGGAGGCCTAGTTTTCTAGAATTTCAGATGGCCTAGGATCCGACTGCCACCTTAGCTAGGACTCGGATTACTAGACTTACACTTTGACCTCAATTATCTCAATTTCGGTAGGAGATATCGAAATTGGGCAAACTAAACACAATTTGGTGATATTAAGACACGCATTTAATTAGTGGACACTTTTTCGATAGCTCTTCTAGAAAATGAGATGATTAAGGTCAAAGTTTGGGACCATCAAACAAATTGAAATTCAAACTAACCGGATCAACAACCACATTTCCAGTGATAATCATTCCATATTTTCCACGTCCCCATTTATCATAGATATTCAGAATTTCTTTGGTTGGCAGTCCATGCTTCTTCGGATTCTGTGGATCATACGTCGACAATCTCTCGGTCATTGCCGCCTTCATGAATCGGTTCGCAGCGGTTCGTCCATTTGGAAATTTGAGTTTCTCGCCAAGAATTTTTGAGCTAACGATAGCAGCATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGATGGAGATTCTGAAAGGAACGGCGCTATTTAAACGAGATGGGAAATGGGAGGGAGAGGAGGATACATCACGGTCGGCACAAAACACAAAATCTAAGAATCTCATGTTGAGTACACTATTCATTTTTGTGACCTGCGTCGGTGGCCCTGATCATCTTTCAGAGGGAAAGGGCAATTGTCAAAACATGAAACGCTAGATTTCTTAACTACAAAATATTTTGCGAAAAGGAAGAAATTTTTTTGAAAGAAGACATTTTTTTGAAATTTTGATGACAAAAAATTAAGGGAATCATTAAACCGCCTTGTCTGATTTGATTTTTTGATCTACCTGATTTACTCCATTATTGATAAACCTAGAACAAATTATATAGTTTTTTTTTTC</canonical>
            <polymorphic>TTTGAGAACCTGATGTGCTTGTATAAGAGGAGAGTTTTGGTCTAGGATCCGAAAAGTGTGTAGGATCCAAAGCAAAAATTTTGGTCACGGTTGGAAGGAGGCCTAGTTTTCTAGAATTTCAGATGGCCTAGGATCCGACTGCCACCTTAGCTAGGACTCGGATTACTAGACTTACACTTTGACCTCAATTATCTCAATTTCGGTAGGAGATATCGAAATTGGGCAAACTAAACACAATTTGGTGATATTAAGACACGCATTTAATTAGTGGACACTTTTTCGATAGCTCTTCTAGAAAATGAGATGATTAAGGTCAAAGTTTGGGACCATCAAACAAATTGAAATTCAAACTAACCGGATCAACAACCACATTTCCAGTGATAATCATTCCATATTTTCCACGTCCCCATTTATCATAGATATTCAGAATTTCTTTGGTTGGCAGTCCATGCTTCTTCGGATTCTGTGGATCATACGTCGACAATCTCTCGGTCATTGCYGCCTTCATGAATCGGTTCGCAGCGGTTCGTCCATTTGGAAATTTGAGTTTCTCGCCAAGAATTTTTGAGCTAACGATAGCAGCATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGATGGAGATTCTGAAAGGAACGGCGCTATTTAAACGAGATGGGAAATGGGAGGGAGAGGAGGATACATCACGGTCGGCACAAAACACAAAATCTAAGAATCTCATGTTGAGTACACTATTCATTTTTGTGACCTGCGTCGGTGGCCCTGATCATCTTTCAGAGGGAAAGGGCAATTGTCAAAACATGAAACGCTAGATTTCTTAACTACAAAATATTTTGCGAAAAGGAAGAAATTTTTTTGAAAGAAGACATTTTTTTGAAATTTTGATGACAAAAAATTAAGGGAATCATTAAACCGCCTTGTCTGATTTGATTTTTTGATCTACCTGATTTACTCCATTATTGATAAACCTAGAACAAATTATATAGTTTTTTTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>499 417 84</canonical_bands>
                <polymorphic_bands>916 84</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCAGTGATAATCATTCCATATT</pcr_primer_p1>
		<pcr_primer_p2>ATCATTCTTCTCACGATGACTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCAGTGATAATCATTCCATATTTTCCACGTCCCCATTTATCATAGATATTCAGAATTTCTTTGGTTGGCAGTCCATGCTTCTTCGGATTCTGTGGATCATACGTCGACAATCTCTCGGTCATTGCCGCCTTCATGAATCGGTTCGCAGCGGTTCGTCCATTTGGAAATTTGAGTTTCTCGCCAAGAATTTTTGAGCTAACGATAGCAGCATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGAT</canonical_amplicon>
		<polymorphic_amplicon>TCCAGTGATAATCATTCCATATTTTCCACGTCCCCATTTATCATAGATATTCAGAATTTCTTTGGTTGGCAGTCCATGCTTCTTCGGATTCTGTGGATCATACGTCGACAATCTCTCGGTCATTGCYGCCTTCATGAATCGGTTCGCAGCGGTTCGTCCATTTGGAAATTTGAGTTTCTCGCCAAGAATTTTTGAGCTAACGATAGCAGCATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26753</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>515149</contig_pos>
        <strand>+</strand>
        <context>CAAGAATTTT[C/T]GAGCTAACGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCGCAGCGGTTCGTCCATTTGGAAATTTGAGTTTCTCGCCAAGAATTTT</left_flank>
        <right_flank>GAGCTAACGATAGCAGCATTTGGGAATCTTTGGAGAGTCATCGTGAGAAG</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAAGCAAAAATTTTGGTCACGGTTGGAAGGAGGCCTAGTTTTCTAGAATTTCAGATGGCCTAGGATCCGACTGCCACCTTAGCTAGGACTCGGATTACTAGACTTACACTTTGACCTCAATTATCTCAATTTCGGTAGGAGATATCGAAATTGGGCAAACTAAACACAATTTGGTGATATTAAGACACGCATTTAATTAGTGGACACTTTTTCGATAGCTCTTCTAGAAAATGAGATGATTAAGGTCAAAGTTTGGGACCATCAAACAAATTGAAATTCAAACTAACCGGATCAACAACCACATTTCCAGTGATAATCATTCCATATTTTCCACGTCCCCATTTATCATAGATATTCAGAATTTCTTTGGTTGGCAGTCCATGCTTCTTCGGATTCTGTGGATCATACGTCGACAATCTCTCGGTCATTGCCGCCTTCATGAATCGGTTCGCAGCGGTTCGTCCATTTGGAAATTTGAGTTTCTCGCCAAGAATTTTTGAGCTAACGATAGCAGCATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGATGGAGATTCTGAAAGGAACGGCGCTATTTAAACGAGATGGGAAATGGGAGGGAGAGGAGGATACATCACGGTCGGCACAAAACACAAAATCTAAGAATCTCATGTTGAGTACACTATTCATTTTTGTGACCTGCGTCGGTGGCCCTGATCATCTTTCAGAGGGAAAGGGCAATTGTCAAAACATGAAACGCTAGATTTCTTAACTACAAAATATTTTGCGAAAAGGAAGAAATTTTTTTGAAAGAAGACATTTTTTTGAAATTTTGATGACAAAAAATTAAGGGAATCATTAAACCGCCTTGTCTGATTTGATTTTTTGATCTACCTGATTTACTCCATTATTGATAAACCTAGAACAAATTATATAGTTTTTTTTTTCATTTGTGACTGTTTCAGTGGACATTTCGAAAGTTACAGAAAGAAACGAAAAAAAAAATGCTTCACT</canonical>
            <polymorphic>CCAAAGCAAAAATTTTGGTCACGGTTGGAAGGAGGCCTAGTTTTCTAGAATTTCAGATGGCCTAGGATCCGACTGCCACCTTAGCTAGGACTCGGATTACTAGACTTACACTTTGACCTCAATTATCTCAATTTCGGTAGGAGATATCGAAATTGGGCAAACTAAACACAATTTGGTGATATTAAGACACGCATTTAATTAGTGGACACTTTTTCGATAGCTCTTCTAGAAAATGAGATGATTAAGGTCAAAGTTTGGGACCATCAAACAAATTGAAATTCAAACTAACCGGATCAACAACCACATTTCCAGTGATAATCATTCCATATTTTCCACGTCCCCATTTATCATAGATATTCAGAATTTCTTTGGTTGGCAGTCCATGCTTCTTCGGATTCTGTGGATCATACGTCGACAATCTCTCGGTCATTGCCGCCTTCATGAATCGGTTCGCAGCGGTTCGTCCATTTGGAAATTTGAGTTTCTCGCCAAGAATTTTYGAGCTAACGATAGCAGCATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGATGGAGATTCTGAAAGGAACGGCGCTATTTAAACGAGATGGGAAATGGGAGGGAGAGGAGGATACATCACGGTCGGCACAAAACACAAAATCTAAGAATCTCATGTTGAGTACACTATTCATTTTTGTGACCTGCGTCGGTGGCCCTGATCATCTTTCAGAGGGAAAGGGCAATTGTCAAAACATGAAACGCTAGATTTCTTAACTACAAAATATTTTGCGAAAAGGAAGAAATTTTTTTGAAAGAAGACATTTTTTTGAAATTTTGATGACAAAAAATTAAGGGAATCATTAAACCGCCTTGTCTGATTTGATTTTTTGATCTACCTGATTTACTCCATTATTGATAAACCTAGAACAAATTATATAGTTTTTTTTTTCATTTGTGACTGTTTCAGTGGACATTTCGAAAGTTACAGAAAGAAACGAAAAAAAAAATGCTTCACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAGTGATAATCATTCCATATT</pcr_primer_p1>
		<pcr_primer_p2>ATCATTCTTCTCACGATGACTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCAGTGATAATCATTCCATATTTTCCACGTCCCCATTTATCATAGATATTCAGAATTTCTTTGGTTGGCAGTCCATGCTTCTTCGGATTCTGTGGATCATACGTCGACAATCTCTCGGTCATTGCCGCCTTCATGAATCGGTTCGCAGCGGTTCGTCCATTTGGAAATTTGAGTTTCTCGCCAAGAATTTTTGAGCTAACGATAGCAGCATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGAT</canonical_amplicon>
		<polymorphic_amplicon>TCCAGTGATAATCATTCCATATTTTCCACGTCCCCATTTATCATAGATATTCAGAATTTCTTTGGTTGGCAGTCCATGCTTCTTCGGATTCTGTGGATCATACGTCGACAATCTCTCGGTCATTGCCGCCTTCATGAATCGGTTCGCAGCGGTTCGTCCATTTGGAAATTTGAGTTTCTCGCCAAGAATTTTYGAGCTAACGATAGCAGCATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26754</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>515216</contig_pos>
        <strand>+</strand>
        <context>GGAGATTCTG[A/G]AAGRAACGGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGATGGAGATTCTG</left_flank>
        <right_flank>AAGGAACGGCGCTATTTAAACGAGATGGGAAATGGGAGGGAGAGGAGGAT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCGACTGCCACCTTAGCTAGGACTCGGATTACTAGACTTACACTTTGACCTCAATTATCTCAATTTCGGTAGGAGATATCGAAATTGGGCAAACTAAACACAATTTGGTGATATTAAGACACGCATTTAATTAGTGGACACTTTTTCGATAGCTCTTCTAGAAAATGAGATGATTAAGGTCAAAGTTTGGGACCATCAAACAAATTGAAATTCAAACTAACCGGATCAACAACCACATTTCCAGTGATAATCATTCCATATTTTCCACGTCCCCATTTATCATAGATATTCAGAATTTCTTTGGTTGGCAGTCCATGCTTCTTCGGATTCTGTGGATCATACGTCGACAATCTCTCGGTCATTGCCGCCTTCATGAATCGGTTCGCAGCGGTTCGTCCATTTGGAAATTTGAGTTTCTCGCCAAGAATTTTTGAGCTAACGATAGCAGCATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGATGGAGATTCTGAAAGGAACGGCGCTATTTAAACGAGATGGGAAATGGGAGGGAGAGGAGGATACATCACGGTCGGCACAAAACACAAAATCTAAGAATCTCATGTTGAGTACACTATTCATTTTTGTGACCTGCGTCGGTGGCCCTGATCATCTTTCAGAGGGAAAGGGCAATTGTCAAAACATGAAACGCTAGATTTCTTAACTACAAAATATTTTGCGAAAAGGAAGAAATTTTTTTGAAAGAAGACATTTTTTTGAAATTTTGATGACAAAAAATTAAGGGAATCATTAAACCGCCTTGTCTGATTTGATTTTTTGATCTACCTGATTTACTCCATTATTGATAAACCTAGAACAAATTATATAGTTTTTTTTTTCATTTGTGACTGTTTCAGTGGACATTTCGAAAGTTACAGAAAGAAACGAAAAAAAAAATGCTTCACTATATTCCAAAAATACATATCATAAAACTTGTTTTTGGAGGCCTCCTTTAATAGAAGGTCCCTTCTAA</canonical>
            <polymorphic>TCCGACTGCCACCTTAGCTAGGACTCGGATTACTAGACTTACACTTTGACCTCAATTATCTCAATTTCGGTAGGAGATATCGAAATTGGGCAAACTAAACACAATTTGGTGATATTAAGACACGCATTTAATTAGTGGACACTTTTTCGATAGCTCTTCTAGAAAATGAGATGATTAAGGTCAAAGTTTGGGACCATCAAACAAATTGAAATTCAAACTAACCGGATCAACAACCACATTTCCAGTGATAATCATTCCATATTTTCCACGTCCCCATTTATCATAGATATTCAGAATTTCTTTGGTTGGCAGTCCATGCTTCTTCGGATTCTGTGGATCATACGTCGACAATCTCTCGGTCATTGCCGCCTTCATGAATCGGTTCGCAGCGGTTCGTCCATTTGGAAATTTGAGTTTCTCGCCAAGAATTTTTGAGCTAACGATAGCAGCATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGATGGAGATTCTGRAAGGAACGGCGCTATTTAAACGAGATGGGAAATGGGAGGGAGAGGAGGATACATCACGGTCGGCACAAAACACAAAATCTAAGAATCTCATGTTGAGTACACTATTCATTTTTGTGACCTGCGTCGGTGGCCCTGATCATCTTTCAGAGGGAAAGGGCAATTGTCAAAACATGAAACGCTAGATTTCTTAACTACAAAATATTTTGCGAAAAGGAAGAAATTTTTTTGAAAGAAGACATTTTTTTGAAATTTTGATGACAAAAAATTAAGGGAATCATTAAACCGCCTTGTCTGATTTGATTTTTTGATCTACCTGATTTACTCCATTATTGATAAACCTAGAACAAATTATATAGTTTTTTTTTTCATTTGTGACTGTTTCAGTGGACATTTCGAAAGTTACAGAAAGAAACGAAAAAAAAAATGCTTCACTATATTCCAAAAATACATATCATAAAACTTGTTTTTGGAGGCCTCCTTTAATAGAAGGTCCCTTCTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>266 207 172 148 147 33 24 3</canonical_bands>
                <polymorphic_bands>320 266 207 147 33 24 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTGGGAATCTTTGGAGAG</pcr_primer_p1>
		<pcr_primer_p2>TTAAGAAATCTAGCGTTTCATGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGATGGAGATTCTGAAAGGAACGGCGCTATTTAAACGAGATGGGAAATGGGAGGGAGAGGAGGATACATCACGGTCGGCACAAAACACAAAATCTAAGAATCTCATGTTGAGTACACTATTCATTTTTGTGACCTGCGTCGGTGGCCCTGATCATCTTTCAGAGGGAAAGGGCAATTGTCAAAACATGAAACGCTAGATTTCTTAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGATGGAGATTCTGRAAGGAACGGCGCTATTTAAACGAGATGGGAAATGGGAGGGAGAGGAGGATACATCACGGTCGGCACAAAACACAAAATCTAAGAATCTCATGTTGAGTACACTATTCATTTTTGTGACCTGCGTCGGTGGCCCTGATCATCTTTCAGAGGGAAAGGGCAATTGTCAAAACATGAAACGCTAGATTTCTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26755</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>515220</contig_pos>
        <strand>+</strand>
        <context>ATTCTGRAAG[A/G]AACGGCGCTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGATGGAGATTCTGAAAG</left_flank>
        <right_flank>AACGGCGCTATTTAAACGAGATGGGAAATGGGAGGGAGAGGAGGATACAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGCCACCTTAGCTAGGACTCGGATTACTAGACTTACACTTTGACCTCAATTATCTCAATTTCGGTAGGAGATATCGAAATTGGGCAAACTAAACACAATTTGGTGATATTAAGACACGCATTTAATTAGTGGACACTTTTTCGATAGCTCTTCTAGAAAATGAGATGATTAAGGTCAAAGTTTGGGACCATCAAACAAATTGAAATTCAAACTAACCGGATCAACAACCACATTTCCAGTGATAATCATTCCATATTTTCCACGTCCCCATTTATCATAGATATTCAGAATTTCTTTGGTTGGCAGTCCATGCTTCTTCGGATTCTGTGGATCATACGTCGACAATCTCTCGGTCATTGCCGCCTTCATGAATCGGTTCGCAGCGGTTCGTCCATTTGGAAATTTGAGTTTCTCGCCAAGAATTTTTGAGCTAACGATAGCAGCATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGATGGAGATTCTGAAAGGAACGGCGCTATTTAAACGAGATGGGAAATGGGAGGGAGAGGAGGATACATCACGGTCGGCACAAAACACAAAATCTAAGAATCTCATGTTGAGTACACTATTCATTTTTGTGACCTGCGTCGGTGGCCCTGATCATCTTTCAGAGGGAAAGGGCAATTGTCAAAACATGAAACGCTAGATTTCTTAACTACAAAATATTTTGCGAAAAGGAAGAAATTTTTTTGAAAGAAGACATTTTTTTGAAATTTTGATGACAAAAAATTAAGGGAATCATTAAACCGCCTTGTCTGATTTGATTTTTTGATCTACCTGATTTACTCCATTATTGATAAACCTAGAACAAATTATATAGTTTTTTTTTTCATTTGTGACTGTTTCAGTGGACATTTCGAAAGTTACAGAAAGAAACGAAAAAAAAAATGCTTCACTATATTCCAAAAATACATATCATAAAACTTGTTTTTGGAGGCCTCCTTTAATAGAAGGTCCCTTCTAATGCA</canonical>
            <polymorphic>ACTGCCACCTTAGCTAGGACTCGGATTACTAGACTTACACTTTGACCTCAATTATCTCAATTTCGGTAGGAGATATCGAAATTGGGCAAACTAAACACAATTTGGTGATATTAAGACACGCATTTAATTAGTGGACACTTTTTCGATAGCTCTTCTAGAAAATGAGATGATTAAGGTCAAAGTTTGGGACCATCAAACAAATTGAAATTCAAACTAACCGGATCAACAACCACATTTCCAGTGATAATCATTCCATATTTTCCACGTCCCCATTTATCATAGATATTCAGAATTTCTTTGGTTGGCAGTCCATGCTTCTTCGGATTCTGTGGATCATACGTCGACAATCTCTCGGTCATTGCCGCCTTCATGAATCGGTTCGCAGCGGTTCGTCCATTTGGAAATTTGAGTTTCTCGCCAAGAATTTTTGAGCTAACGATAGCAGCATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGATGGAGATTCTGAAAGRAACGGCGCTATTTAAACGAGATGGGAAATGGGAGGGAGAGGAGGATACATCACGGTCGGCACAAAACACAAAATCTAAGAATCTCATGTTGAGTACACTATTCATTTTTGTGACCTGCGTCGGTGGCCCTGATCATCTTTCAGAGGGAAAGGGCAATTGTCAAAACATGAAACGCTAGATTTCTTAACTACAAAATATTTTGCGAAAAGGAAGAAATTTTTTTGAAAGAAGACATTTTTTTGAAATTTTGATGACAAAAAATTAAGGGAATCATTAAACCGCCTTGTCTGATTTGATTTTTTGATCTACCTGATTTACTCCATTATTGATAAACCTAGAACAAATTATATAGTTTTTTTTTTCATTTGTGACTGTTTCAGTGGACATTTCGAAAGTTACAGAAAGAAACGAAAAAAAAAATGCTTCACTATATTCCAAAAATACATATCATAAAACTTGTTTTTGGAGGCCTCCTTTAATAGAAGGTCCCTTCTAATGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGGGAATCTTTGGAGAG</pcr_primer_p1>
		<pcr_primer_p2>TTAAGAAATCTAGCGTTTCATGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGATGGAGATTCTGAAAGGAACGGCGCTATTTAAACGAGATGGGAAATGGGAGGGAGAGGAGGATACATCACGGTCGGCACAAAACACAAAATCTAAGAATCTCATGTTGAGTACACTATTCATTTTTGTGACCTGCGTCGGTGGCCCTGATCATCTTTCAGAGGGAAAGGGCAATTGTCAAAACATGAAACGCTAGATTTCTTAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGATGGAGATTCTGAAAGRAACGGCGCTATTTAAACGAGATGGGAAATGGGAGGGAGAGGAGGATACATCACGGTCGGCACAAAACACAAAATCTAAGAATCTCATGTTGAGTACACTATTCATTTTTGTGACCTGCGTCGGTGGCCCTGATCATCTTTCAGAGGGAAAGGGCAATTGTCAAAACATGAAACGCTAGATTTCTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26756</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>515245</contig_pos>
        <strand>+</strand>
        <context>AACGAGATGG[G/T]AAATGGGAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGAAGAATGATGGAGATTCTGAAAGGAACGGCGCTATTTAAACGAGATGG</left_flank>
        <right_flank>AAATGGGAGGGAGAGGAGGATACATCACGGTCGGCACAAAACACAAAATC</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTACTAGACTTACACTTTGACCTCAATTATCTCAATTTCGGTAGGAGATATCGAAATTGGGCAAACTAAACACAATTTGGTGATATTAAGACACGCATTTAATTAGTGGACACTTTTTCGATAGCTCTTCTAGAAAATGAGATGATTAAGGTCAAAGTTTGGGACCATCAAACAAATTGAAATTCAAACTAACCGGATCAACAACCACATTTCCAGTGATAATCATTCCATATTTTCCACGTCCCCATTTATCATAGATATTCAGAATTTCTTTGGTTGGCAGTCCATGCTTCTTCGGATTCTGTGGATCATACGTCGACAATCTCTCGGTCATTGCCGCCTTCATGAATCGGTTCGCAGCGGTTCGTCCATTTGGAAATTTGAGTTTCTCGCCAAGAATTTTTGAGCTAACGATAGCAGCATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGATGGAGATTCTGAAAGGAACGGCGCTATTTAAACGAGATGGGAAATGGGAGGGAGAGGAGGATACATCACGGTCGGCACAAAACACAAAATCTAAGAATCTCATGTTGAGTACACTATTCATTTTTGTGACCTGCGTCGGTGGCCCTGATCATCTTTCAGAGGGAAAGGGCAATTGTCAAAACATGAAACGCTAGATTTCTTAACTACAAAATATTTTGCGAAAAGGAAGAAATTTTTTTGAAAGAAGACATTTTTTTGAAATTTTGATGACAAAAAATTAAGGGAATCATTAAACCGCCTTGTCTGATTTGATTTTTTGATCTACCTGATTTACTCCATTATTGATAAACCTAGAACAAATTATATAGTTTTTTTTTTCATTTGTGACTGTTTCAGTGGACATTTCGAAAGTTACAGAAAGAAACGAAAAAAAAAATGCTTCACTATATTCCAAAAATACATATCATAAAACTTGTTTTTGGAGGCCTCCTTTAATAGAAGGTCCCTTCTAATGCAGGTTTTACGGTATTTGAAAAATTGA</canonical>
            <polymorphic>TTACTAGACTTACACTTTGACCTCAATTATCTCAATTTCGGTAGGAGATATCGAAATTGGGCAAACTAAACACAATTTGGTGATATTAAGACACGCATTTAATTAGTGGACACTTTTTCGATAGCTCTTCTAGAAAATGAGATGATTAAGGTCAAAGTTTGGGACCATCAAACAAATTGAAATTCAAACTAACCGGATCAACAACCACATTTCCAGTGATAATCATTCCATATTTTCCACGTCCCCATTTATCATAGATATTCAGAATTTCTTTGGTTGGCAGTCCATGCTTCTTCGGATTCTGTGGATCATACGTCGACAATCTCTCGGTCATTGCCGCCTTCATGAATCGGTTCGCAGCGGTTCGTCCATTTGGAAATTTGAGTTTCTCGCCAAGAATTTTTGAGCTAACGATAGCAGCATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGATGGAGATTCTGAAAGGAACGGCGCTATTTAAACGAGATGGKAAATGGGAGGGAGAGGAGGATACATCACGGTCGGCACAAAACACAAAATCTAAGAATCTCATGTTGAGTACACTATTCATTTTTGTGACCTGCGTCGGTGGCCCTGATCATCTTTCAGAGGGAAAGGGCAATTGTCAAAACATGAAACGCTAGATTTCTTAACTACAAAATATTTTGCGAAAAGGAAGAAATTTTTTTGAAAGAAGACATTTTTTTGAAATTTTGATGACAAAAAATTAAGGGAATCATTAAACCGCCTTGTCTGATTTGATTTTTTGATCTACCTGATTTACTCCATTATTGATAAACCTAGAACAAATTATATAGTTTTTTTTTTCATTTGTGACTGTTTCAGTGGACATTTCGAAAGTTACAGAAAGAAACGAAAAAAAAAATGCTTCACTATATTCCAAAAATACATATCATAAAACTTGTTTTTGGAGGCCTCCTTTAATAGAAGGTCCCTTCTAATGCAGGTTTTACGGTATTTGAAAAATTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGGGAATCTTTGGAGAG</pcr_primer_p1>
		<pcr_primer_p2>TTAAGAAATCTAGCGTTTCATGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGATGGAGATTCTGAAAGGAACGGCGCTATTTAAACGAGATGGGAAATGGGAGGGAGAGGAGGATACATCACGGTCGGCACAAAACACAAAATCTAAGAATCTCATGTTGAGTACACTATTCATTTTTGTGACCTGCGTCGGTGGCCCTGATCATCTTTCAGAGGGAAAGGGCAATTGTCAAAACATGAAACGCTAGATTTCTTAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGATGGAGATTCTGAAAGGAACGGCGCTATTTAAACGAGATGGKAAATGGGAGGGAGAGGAGGATACATCACGGTCGGCACAAAACACAAAATCTAAGAATCTCATGTTGAGTACACTATTCATTTTTGTGACCTGCGTCGGTGGCCCTGATCATCTTTCAGAGGGAAAGGGCAATTGTCAAAACATGAAACGCTAGATTTCTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26757</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>515280</contig_pos>
        <strand>+</strand>
        <context>TCACGGTCGG[C/T]ACAAAACACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTAAACGAGATGGGAAATGGGAGGGAGAGGAGGATACATCACGGTCGG</left_flank>
        <right_flank>ACAAAACACAAAATCTAAGAATCTCATGTTGAGTACACTATTCATTTTTG</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGGTAGGAGATATCGAAATTGGGCAAACTAAACACAATTTGGTGATATTAAGACACGCATTTAATTAGTGGACACTTTTTCGATAGCTCTTCTAGAAAATGAGATGATTAAGGTCAAAGTTTGGGACCATCAAACAAATTGAAATTCAAACTAACCGGATCAACAACCACATTTCCAGTGATAATCATTCCATATTTTCCACGTCCCCATTTATCATAGATATTCAGAATTTCTTTGGTTGGCAGTCCATGCTTCTTCGGATTCTGTGGATCATACGTCGACAATCTCTCGGTCATTGCCGCCTTCATGAATCGGTTCGCAGCGGTTCGTCCATTTGGAAATTTGAGTTTCTCGCCAAGAATTTTTGAGCTAACGATAGCAGCATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGATGGAGATTCTGAAAGGAACGGCGCTATTTAAACGAGATGGGAAATGGGAGGGAGAGGAGGATACATCACGGTCGGCACAAAACACAAAATCTAAGAATCTCATGTTGAGTACACTATTCATTTTTGTGACCTGCGTCGGTGGCCCTGATCATCTTTCAGAGGGAAAGGGCAATTGTCAAAACATGAAACGCTAGATTTCTTAACTACAAAATATTTTGCGAAAAGGAAGAAATTTTTTTGAAAGAAGACATTTTTTTGAAATTTTGATGACAAAAAATTAAGGGAATCATTAAACCGCCTTGTCTGATTTGATTTTTTGATCTACCTGATTTACTCCATTATTGATAAACCTAGAACAAATTATATAGTTTTTTTTTTCATTTGTGACTGTTTCAGTGGACATTTCGAAAGTTACAGAAAGAAACGAAAAAAAAAATGCTTCACTATATTCCAAAAATACATATCATAAAACTTGTTTTTGGAGGCCTCCTTTAATAGAAGGTCCCTTCTAATGCAGGTTTTACGGTATTTGAAAAATTGAAATTAGACAAGCATGGGATAAAAGTTCGAAAAACA</canonical>
            <polymorphic>TTTCGGTAGGAGATATCGAAATTGGGCAAACTAAACACAATTTGGTGATATTAAGACACGCATTTAATTAGTGGACACTTTTTCGATAGCTCTTCTAGAAAATGAGATGATTAAGGTCAAAGTTTGGGACCATCAAACAAATTGAAATTCAAACTAACCGGATCAACAACCACATTTCCAGTGATAATCATTCCATATTTTCCACGTCCCCATTTATCATAGATATTCAGAATTTCTTTGGTTGGCAGTCCATGCTTCTTCGGATTCTGTGGATCATACGTCGACAATCTCTCGGTCATTGCCGCCTTCATGAATCGGTTCGCAGCGGTTCGTCCATTTGGAAATTTGAGTTTCTCGCCAAGAATTTTTGAGCTAACGATAGCAGCATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGATGGAGATTCTGAAAGGAACGGCGCTATTTAAACGAGATGGGAAATGGGAGGGAGAGGAGGATACATCACGGTCGGYACAAAACACAAAATCTAAGAATCTCATGTTGAGTACACTATTCATTTTTGTGACCTGCGTCGGTGGCCCTGATCATCTTTCAGAGGGAAAGGGCAATTGTCAAAACATGAAACGCTAGATTTCTTAACTACAAAATATTTTGCGAAAAGGAAGAAATTTTTTTGAAAGAAGACATTTTTTTGAAATTTTGATGACAAAAAATTAAGGGAATCATTAAACCGCCTTGTCTGATTTGATTTTTTGATCTACCTGATTTACTCCATTATTGATAAACCTAGAACAAATTATATAGTTTTTTTTTTCATTTGTGACTGTTTCAGTGGACATTTCGAAAGTTACAGAAAGAAACGAAAAAAAAAATGCTTCACTATATTCCAAAAATACATATCATAAAACTTGTTTTTGGAGGCCTCCTTTAATAGAAGGTCCCTTCTAATGCAGGTTTTACGGTATTTGAAAAATTGAAATTAGACAAGCATGGGATAAAAGTTCGAAAAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>245 143 133 95 78 67 45 37 29 21 15 15 13 12 11 11 10 9 7 4</canonical_bands>
                <polymorphic_bands>245 143 133 95 78 67 45 37 29 21 16 15 15 13 12 11 11 10 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTGGGAATCTTTGGAGAG</pcr_primer_p1>
		<pcr_primer_p2>TTAAGAAATCTAGCGTTTCATGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGATGGAGATTCTGAAAGGAACGGCGCTATTTAAACGAGATGGGAAATGGGAGGGAGAGGAGGATACATCACGGTCGGCACAAAACACAAAATCTAAGAATCTCATGTTGAGTACACTATTCATTTTTGTGACCTGCGTCGGTGGCCCTGATCATCTTTCAGAGGGAAAGGGCAATTGTCAAAACATGAAACGCTAGATTTCTTAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGATGGAGATTCTGAAAGGAACGGCGCTATTTAAACGAGATGGGAAATGGGAGGGAGAGGAGGATACATCACGGTCGGYACAAAACACAAAATCTAAGAATCTCATGTTGAGTACACTATTCATTTTTGTGACCTGCGTCGGTGGCCCTGATCATCTTTCAGAGGGAAAGGGCAATTGTCAAAACATGAAACGCTAGATTTCTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26758</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>515300</contig_pos>
        <strand>+</strand>
        <context>AAAATCTAAG[A/T]ATCTCATGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGGAGGGAGAGGAGGATACATCACGGTCGGCACAAAACACAAAATCTAAG</left_flank>
        <right_flank>ATCTCATGTTGAGTACACTATTCATTTTTGTGACCTGCGTCGGTGGCCCT</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGGGCAAACTAAACACAATTTGGTGATATTAAGACACGCATTTAATTAGTGGACACTTTTTCGATAGCTCTTCTAGAAAATGAGATGATTAAGGTCAAAGTTTGGGACCATCAAACAAATTGAAATTCAAACTAACCGGATCAACAACCACATTTCCAGTGATAATCATTCCATATTTTCCACGTCCCCATTTATCATAGATATTCAGAATTTCTTTGGTTGGCAGTCCATGCTTCTTCGGATTCTGTGGATCATACGTCGACAATCTCTCGGTCATTGCCGCCTTCATGAATCGGTTCGCAGCGGTTCGTCCATTTGGAAATTTGAGTTTCTCGCCAAGAATTTTTGAGCTAACGATAGCAGCATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGATGGAGATTCTGAAAGGAACGGCGCTATTTAAACGAGATGGGAAATGGGAGGGAGAGGAGGATACATCACGGTCGGCACAAAACACAAAATCTAAGAATCTCATGTTGAGTACACTATTCATTTTTGTGACCTGCGTCGGTGGCCCTGATCATCTTTCAGAGGGAAAGGGCAATTGTCAAAACATGAAACGCTAGATTTCTTAACTACAAAATATTTTGCGAAAAGGAAGAAATTTTTTTGAAAGAAGACATTTTTTTGAAATTTTGATGACAAAAAATTAAGGGAATCATTAAACCGCCTTGTCTGATTTGATTTTTTGATCTACCTGATTTACTCCATTATTGATAAACCTAGAACAAATTATATAGTTTTTTTTTTCATTTGTGACTGTTTCAGTGGACATTTCGAAAGTTACAGAAAGAAACGAAAAAAAAAATGCTTCACTATATTCCAAAAATACATATCATAAAACTTGTTTTTGGAGGCCTCCTTTAATAGAAGGTCCCTTCTAATGCAGGTTTTACGGTATTTGAAAAATTGAAATTAGACAAGCATGGGATAAAAGTTCGAAAAACAAATTTTAAAAAATCACCTGC</canonical>
            <polymorphic>ATTGGGCAAACTAAACACAATTTGGTGATATTAAGACACGCATTTAATTAGTGGACACTTTTTCGATAGCTCTTCTAGAAAATGAGATGATTAAGGTCAAAGTTTGGGACCATCAAACAAATTGAAATTCAAACTAACCGGATCAACAACCACATTTCCAGTGATAATCATTCCATATTTTCCACGTCCCCATTTATCATAGATATTCAGAATTTCTTTGGTTGGCAGTCCATGCTTCTTCGGATTCTGTGGATCATACGTCGACAATCTCTCGGTCATTGCCGCCTTCATGAATCGGTTCGCAGCGGTTCGTCCATTTGGAAATTTGAGTTTCTCGCCAAGAATTTTTGAGCTAACGATAGCAGCATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGATGGAGATTCTGAAAGGAACGGCGCTATTTAAACGAGATGGGAAATGGGAGGGAGAGGAGGATACATCACGGTCGGCACAAAACACAAAATCTAAGWATCTCATGTTGAGTACACTATTCATTTTTGTGACCTGCGTCGGTGGCCCTGATCATCTTTCAGAGGGAAAGGGCAATTGTCAAAACATGAAACGCTAGATTTCTTAACTACAAAATATTTTGCGAAAAGGAAGAAATTTTTTTGAAAGAAGACATTTTTTTGAAATTTTGATGACAAAAAATTAAGGGAATCATTAAACCGCCTTGTCTGATTTGATTTTTTGATCTACCTGATTTACTCCATTATTGATAAACCTAGAACAAATTATATAGTTTTTTTTTTCATTTGTGACTGTTTCAGTGGACATTTCGAAAGTTACAGAAAGAAACGAAAAAAAAAATGCTTCACTATATTCCAAAAATACATATCATAAAACTTGTTTTTGGAGGCCTCCTTTAATAGAAGGTCCCTTCTAATGCAGGTTTTACGGTATTTGAAAAATTGAAATTAGACAAGCATGGGATAAAAGTTCGAAAAACAAATTTTAAAAAATCACCTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>312 243 189 90 81 49 25 11</canonical_bands>
                <polymorphic_bands>312 279 243 81 49 25 11</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>312 243 189 90 81 49 36</canonical_bands>
                <polymorphic_bands>312 279 243 81 49 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTGGGAATCTTTGGAGAG</pcr_primer_p1>
		<pcr_primer_p2>TTAAGAAATCTAGCGTTTCATGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGATGGAGATTCTGAAAGGAACGGCGCTATTTAAACGAGATGGGAAATGGGAGGGAGAGGAGGATACATCACGGTCGGCACAAAACACAAAATCTAAGAATCTCATGTTGAGTACACTATTCATTTTTGTGACCTGCGTCGGTGGCCCTGATCATCTTTCAGAGGGAAAGGGCAATTGTCAAAACATGAAACGCTAGATTTCTTAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTGGGAATCTTTGGAGAGTCATCGTGAGAAGAATGATGGAGATTCTGAAAGGAACGGCGCTATTTAAACGAGATGGGAAATGGGAGGGAGAGGAGGATACATCACGGTCGGCACAAAACACAAAATCTAAGWATCTCATGTTGAGTACACTATTCATTTTTGTGACCTGCGTCGGTGGCCCTGATCATCTTTCAGAGGGAAAGGGCAATTGTCAAAACATGAAACGCTAGATTTCTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26759</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>520453</contig_pos>
        <strand>+</strand>
        <context>ACGGAACTTC[G/T]GGACATGTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATCATTTTTATGTGATCAAAAAACCACTTTCCAGACGTTACGGAACTTC</left_flank>
        <right_flank>GGACATGTGAAACCTTGTAAAACAGGTGGAAACTGTGTGGTACGCAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTAGTCTGGATTTTTTCTCTATTTTCACGTTAATTTGGACGTGTGGGCGAAGTATTTGAGCTACGCCAAATTTGTAGCTATGGTAACCCAACTTTCTTGTCCGCCTTCTCCCTTTGACATAGTGTTCTAAACGACATGATTAAAAATCGCGCAAACTTTTAGGCCATGAGAATATTAATAATATCAAAGTGTTTGTGGATTTGACCCGGGTATTTTCAATCAACGCTCGATTTTTTTGCTCATCGTTGTACGTTTGATACTCAGCCAACGAAGGATTTAGCTAGGTCTCGAGGTTTGCTGGAGCGCGATTTTTTGACCAGGTTTTTCGGAACCCTGTGTCGAGTCTTCCATAAAAACCAAAAAAGTTATAACTCAAAATTGAAATGGTCAGAGTTCGTTAAGACCTTCTAATCACTAAATGTATGATAAGAAATATTTGAACCGTGATATCATTTTTATGTGATCAAAAAACCACTTTCCAGACGTTACGGAACTTCGGGACATGTGAAACCTTGTAAAACAGGTGGAAACTGTGTGGTACGCAAAAAAGGATGGTTCAATTGTAAAAAGTGTCGGCTTGAGAAATGTAAAAACGTAGGAATGAAAATTGATGGTAGGTTTTGTATTCCAAAAACTTTTTGAATCCAAGTTTGAAGGTTTCCAATTTGGTCGAGATCCGGAAAGAGTTCAAAGAGGGTTTCTAGATAATATTCCTGCGTCCATGGCAACATTTTTGGGTCGGCCGAATTTCATAATTTATTGTGCACCTGCTCACGACCCTGATTACACCCCACCAAGGGTTATAATCGATGTCCAGTTTCTCCTAGATAAAGCGGAAGACTTGCTGCACGAGGTAAGTCGAGGAGAAAACTTAGTAAGAGAACCACTATTTTTTTCAGGGCTCTTGGTCTCCAGTTTTTGCACTTAATCCACTTGAAAAACTTGCTCTCGGGCTTCAACACATTCGGAGTGTAGTGGGAAAAGGGTTGAAGGCGTTT</canonical>
            <polymorphic>TTGTAGTCTGGATTTTTTCTCTATTTTCACGTTAATTTGGACGTGTGGGCGAAGTATTTGAGCTACGCCAAATTTGTAGCTATGGTAACCCAACTTTCTTGTCCGCCTTCTCCCTTTGACATAGTGTTCTAAACGACATGATTAAAAATCGCGCAAACTTTTAGGCCATGAGAATATTAATAATATCAAAGTGTTTGTGGATTTGACCCGGGTATTTTCAATCAACGCTCGATTTTTTTGCTCATCGTTGTACGTTTGATACTCAGCCAACGAAGGATTTAGCTAGGTCTCGAGGTTTGCTGGAGCGCGATTTTTTGACCAGGTTTTTCGGAACCCTGTGTCGAGTCTTCCATAAAAACCAAAAAAGTTATAACTCAAAATTGAAATGGTCAGAGTTCGTTAAGACCTTCTAATCACTAAATGTATGATAAGAAATATTTGAACCGTGATATCATTTTTATGTGATCAAAAAACCACTTTCCAGACGTTACGGAACTTCKGGACATGTGAAACCTTGTAAAACAGGTGGAAACTGTGTGGTACGCAAAAAAGGATGGTTCAATTGTAAAAAGTGTCGGCTTGAGAAATGTAAAAACGTAGGAATGAAAATTGATGGTAGGTTTTGTATTCCAAAAACTTTTTGAATCCAAGTTTGAAGGTTTCCAATTTGGTCGAGATCCGGAAAGAGTTCAAAGAGGGTTTCTAGATAATATTCCTGCGTCCATGGCAACATTTTTGGGTCGGCCGAATTTCATAATTTATTGTGCACCTGCTCACGACCCTGATTACACCCCACCAAGGGTTATAATCGATGTCCAGTTTCTCCTAGATAAAGCGGAAGACTTGCTGCACGAGGTAAGTCGAGGAGAAAACTTAGTAAGAGAACCACTATTTTTTTCAGGGCTCTTGGTCTCCAGTTTTTGCACTTAATCCACTTGAAAAACTTGCTCTCGGGCTTCAACACATTCGGAGTGTAGTGGGAAAAGGGTTGAAGGCGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAACTCAAAATTGAAATGGTCA</pcr_primer_p1>
		<pcr_primer_p2>CAATTTTCATTCCTACGTTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATAACTCAAAATTGAAATGGTCAGAGTTCGTTAAGACCTTCTAATCACTAAATGTATGATAAGAAATATTTGAACCGTGATATCATTTTTATGTGATCAAAAAACCACTTTCCAGACGTTACGGAACTTCGGGACATGTGAAACCTTGTAAAACAGGTGGAAACTGTGTGGTACGCAAAAAAGGATGGTTCAATTGTAAAAAGTGTCGGCTTGAGAAATGTAAAAACGTAGGAATGAAAATTG</canonical_amplicon>
		<polymorphic_amplicon>ATAACTCAAAATTGAAATGGTCAGAGTTCGTTAAGACCTTCTAATCACTAAATGTATGATAAGAAATATTTGAACCGTGATATCATTTTTATGTGATCAAAAAACCACTTTCCAGACGTTACGGAACTTCKGGACATGTGAAACCTTGTAAAACAGGTGGAAACTGTGTGGTACGCAAAAAAGGATGGTTCAATTGTAAAAAGTGTCGGCTTGAGAAATGTAAAAACGTAGGAATGAAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26760</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>520794</contig_pos>
        <strand></strand>
        <context>TAAAGCGGAA[G/A]ACTTGCTGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CCCCACCAAGGGTTATAATCGATGTCCAGTTTCTCCTAGATAAAGCGGAA</left_flank>
        <right_flank>ACTTGCTGCACGAGGTAAGTCGAGGAGAAAACTTAGTAAGAGAACCACTA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGTCTTCCATAAAAACCAAAAAAGTTATAACTCAAAATTGAAATGGTCAGAGTTCGTTAAGACCTTCTAATCACTAAATGTATGATAAGAAATATTTGAACCGTGATATCATTTTTATGTGATCAAAAAACCACTTTCCAGACGTTACGGAACTTCGGGACATGTGAAACCTTGTAAAACAGGTGGAAACTGTGTGGTACGCAAAAAAGGATGGTTCAATTGTAAAAAGTGTCGGCTTGAGAAATGTAAAAACGTAGGAATGAAAATTGATGGTAGGTTTTGTATTCCAAAAACTTTTTGAATCCAAGTTTGAAGGTTTCCAATTTGGTCGAGATCCGGAAAGAGTTCAAAGAGGGTTTCTAGATAATATTCCTGCGTCCATGGCAACATTTTTGGGTCGGCCGAATTTCATAATTTATTGTGCACCTGCTCACGACCCTGATTACACCCCACCAAGGGTTATAATCGATGTCCAGTTTCTCCTAGATAAAGCGGAAGACTTGCTGCACGAGGTAAGTCGAGGAGAAAACTTAGTAAGAGAACCACTATTTTTTTCAGGGCTCTTGGTCTCCAGTTTTTGCACTTAATCCACTTGAAAAACTTGCTCTCGGGCTTCAACACATTCGGAGTGTAGTGGGAAAAGGGTTGAAGGCGTTTCATAAGATTGGAAAAGAAGAAGCACTGACACTTTTTGAAGATGAGTTGCTGAGGACTGCAAAGTGGTTAACCTATTTTGATGATTTCCAAAGGTTGCCACAAAAATTGCAGGTAAGATTAGGGGGTTTTTACCTTTGCGTGACCGTTTTCACACCTTTTAATTTCTCTCTTGGGTATCGTGTCTTTTTGGCACAGCTGGTAGGAGCGCTACTCGGGCGTATAAAGCAATTTCTGGCCAGGAATGTGCCAGATTCAGAATAAGAGCGCTACCAAACCCGACCACTTCAACAAAGTTAGGAAAAGGTTCTGACATAGTGGCGTCTCAATTTTCAACTTCCGAC</canonical>
            <polymorphic>CGAGTCTTCCATAAAAACCAAAAAAGTTATAACTCAAAATTGAAATGGTCAGAGTTCGTTAAGACCTTCTAATCACTAAATGTATGATAAGAAATATTTGAACCGTGATATCATTTTTATGTGATCAAAAAACCACTTTCCAGACGTTACGGAACTTCGGGACATGTGAAACCTTGTAAAACAGGTGGAAACTGTGTGGTACGCAAAAAAGGATGGTTCAATTGTAAAAAGTGTCGGCTTGAGAAATGTAAAAACGTAGGAATGAAAATTGATGGTAGGTTTTGTATTCCAAAAACTTTTTGAATCCAAGTTTGAAGGTTTCCAATTTGGTCGAGATCCGGAAAGAGTTCAAAGAGGGTTTCTAGATAATATTCCTGCGTCCATGGCAACATTTTTGGGTCGGCCGAATTTCATAATTTATTGTGCACCTGCTCACGACCCTGATTACACCCCACCAAGGGTTATAATCGATGTCCAGTTTCTCCTAGATAAAGCGGAARACTTGCTGCACGAGGTAAGTCGAGGAGAAAACTTAGTAAGAGAACCACTATTTTTTTCAGGGCTCTTGGTCTCCAGTTTTTGCACTTAATCCACTTGAAAAACTTGCTCTCGGGCTTCAACACATTCGGAGTGTAGTGGGAAAAGGGTTGAAGGCGTTTCATAAGATTGGAAAAGAAGAAGCACTGACACTTTTTGAAGATGAGTTGCTGAGGACTGCAAAGTGGTTAACCTATTTTGATGATTTCCAAAGGTTGCCACAAAAATTGCAGGTAAGATTAGGGGGTTTTTACCTTTGCGTGACCGTTTTCACACCTTTTAATTTCTCTCTTGGGTATCGTGTCTTTTTGGCACAGCTGGTAGGAGCGCTACTCGGGCGTATAAAGCAATTTCTGGCCAGGAATGTGCCAGATTCAGAATAAGAGCGCTACCAAACCCGACCACTTCAACAAAGTTAGGAAAAGGTTCTGACATAGTGGCGTCTCAATTTTCAACTTCCGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAGTTCAAAGAGGGTTTCTA</pcr_primer_p1>
		<pcr_primer_p2>ATTAAGTGCAAAAACTGGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAGAGTTCAAAGAGGGTTTCTAGATAATATTCCTGCGTCCATGGCAACATTTTTGGGTCGGCCGAATTTCATAATTTATTGTGCACCTGCTCACGACCCTGATTACACCCCACCAAGGGTTATAATCGATGTCCAGTTTCTCCTAGATAAAGCGGAAGACTTGCTGCACGAGGTAAGTCGAGGAGAAAACTTAGTAAGAGAACCACTATTTTTTTCAGGGCTCTTGGTCTCCAGTTTTTGCACTTAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAGAGTTCAAAGAGGGTTTCTAGATAATATTCCTGCGTCCATGGCAACATTTTTGGGTCGGCCGAATTTCATAATTTATTGTGCACCTGCTCACGACCCTGATTACACCCCACCAAGGGTTATAATCGATGTCCAGTTTCTCCTAGATAAAGCGGAARACTTGCTGCACGAGGTAAGTCGAGGAGAAAACTTAGTAAGAGAACCACTATTTTTTTCAGGGCTCTTGGTCTCCAGTTTTTGCACTTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26761</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>523820</contig_pos>
        <strand>+</strand>
        <context>GGCTTCCTTA[G/T]GYAAAAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATGTAAACTATTTTATTTGGAAAGGTCAACTCCTCAAGGGGCTTCCTTA</left_flank>
        <right_flank>GAAAAAAAATCGAGAAAAAAAATTATTTGTTCACCATTGGAGGTGCCGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCAAGTGCCAAAAATCGACATTTATTGGCATAACTTGTGTGAGCATGATTTCCCCCGGGGTATTGATATGTTTCTATAGTAAATCAAACGTGCTGAGTTCAATGGTCATAATAAGAAAAAAAGTTAACTTGGGATTTTTGAGATATTGAAAAATTTTTCGGTTTTTTCAAAAAATCAATAATCCAATCAATGAGAAAAAAATCAAAAAATTGTTTTCCAAAATATCAATAAATTGTCTATTTATTGTTTTTAAATCTAAACAAACAAACAAAAACAGACAAAGTTATGATTTTTTGAAAATATAGCCATTTTTTGGTACGTTTTGGGCCATAACTCCCCAAAAAAATTTTATATCAACTATTTCTTTTGGATTCTAAAATTTCTTTTTACGCTCTTTTCAACCATATAGGTCTCAATTTTTTCAAGGGTAACACTTGGGAGTCATTCCATGTAAACTATTTTATTTGGAAAGGTCAACTCCTCAAGGGGCTTCCTTATGAAAAAAAATCGAGAAAAAAAATTATTTGTTCACCATTGGAGGTGCCGCGCCGCTAACAGTTGAGCTAATAGTAATGGGGCGCAAGTTGATACGGCTAAACGATGGCACACATAACAGCAATAACGAAAACTCATATTTCTGGAATTTTCTTCAATTATAGCCTCTTGAGGAGTTGAACTTGTGGACCTATCGATGAAGGTGCCGCGTCGCTACCAGCTAAGCTACGGTGGCACCGACCGTTGTCGTCTTTGAAACCGGCACCAGTGTTGAGCGGAAATACAATTTCGCTTGACGGAAGACGGAAGACGGAACAGGAAAATCCACGGAAGACGGAAAATCGTATAATTAAAATTGGAATTTTTGAATTGGACAATGTGGAAAGAATTTCGCAAAAGTTGTCTGAAAATTCCACGAATCCTGTTAGTATTCTGTTATTTGGAATTTATAAAGACGGAAGACGGAAAACGGAAGACGGAATTCTAAACATTGAGCGGCACCA</canonical>
            <polymorphic>AGCCAAGTGCCAAAAATCGACATTTATTGGCATAACTTGTGTGAGCATGATTTCCCCCGGGGTATTGATATGTTTCTATAGTAAATCAAACGTGCTGAGTTCAATGGTCATAATAAGAAAAAAAGTTAACTTGGGATTTTTGAGATATTGAAAAATTTTTCGGTTTTTTCAAAAAATCAATAATCCAATCAATGAGAAAAAAATCAAAAAATTGTTTTCCAAAATATCAATAAATTGTCTATTTATTGTTTTTAAATCTAAACAAACAAACAAAAACAGACAAAGTTATGATTTTTTGAAAATATAGCCATTTTTTGGTACGTTTTGGGCCATAACTCCCCAAAAAAATTTTATATCAACTATTTCTTTTGGATTCTAAAATTTCTTTTTACGCTCTTTTCAACCATATAGGTCTCAATTTTTTCAAGGGTAACACTTGGGAGTCATTCCATGTAAACTATTTTATTTGGAAAGGTCAACTCCTCAAGGGGCTTCCTTAKGAAAAAAAATCGAGAAAAAAAATTATTTGTTCACCATTGGAGGTGCCGCGCCGCTAACAGTTGAGCTAATAGTAATGGGGCGCAAGTTGATACGGCTAAACGATGGCACACATAACAGCAATAACGAAAACTCATATTTCTGGAATTTTCTTCAATTATAGCCTCTTGAGGAGTTGAACTTGTGGACCTATCGATGAAGGTGCCGCGTCGCTACCAGCTAAGCTACGGTGGCACCGACCGTTGTCGTCTTTGAAACCGGCACCAGTGTTGAGCGGAAATACAATTTCGCTTGACGGAAGACGGAAGACGGAACAGGAAAATCCACGGAAGACGGAAAATCGTATAATTAAAATTGGAATTTTTGAATTGGACAATGTGGAAAGAATTTCGCAAAAGTTGTCTGAAAATTCCACGAATCCTGTTAGTATTCTGTTATTTGGAATTTATAAAGACGGAAGACGGAAAACGGAAGACGGAATTCTAAACATTGAGCGGCACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTAAAATCACAAAAACAAATG</pcr_primer_p1>
		<pcr_primer_p2>ATCGTTTAGCCGTATCAACTT</pcr_primer_p2>
		<pcr_amplicon_size>670</pcr_amplicon_size>
		<canonical_amplicon>ATGAAAAAAAATCGAGAAAAAAAATTATTTGTTCACCATTGGAGGTGCCGCGCCGCTAACAGTTGAGCTAATAGTAATGGGGCGCAAGTTGATACGGCTAAACGAT</canonical_amplicon>
		<polymorphic_amplicon>AKGAAAAAAAATCGAGAAAAAAAATTATTTGTTCACCATTGGAGGTGCCGCGCCGCTAACAGTTGAGCTAATAGTAATGGGGCGCAAGTTGATACGGCTAAACGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26762</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>523822</contig_pos>
        <strand>+</strand>
        <context>CTTCCTTAKG[C/T]AAAAAAATCG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTAAACTATTTTATTTGGAAAGGTCAACTCCTCAAGGGGCTTCCTTATG</left_flank>
        <right_flank>AAAAAAATCGAGAAAAAAAATTATTTGTTCACCATTGGAGGTGCCGCGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAGTGCCAAAAATCGACATTTATTGGCATAACTTGTGTGAGCATGATTTCCCCCGGGGTATTGATATGTTTCTATAGTAAATCAAACGTGCTGAGTTCAATGGTCATAATAAGAAAAAAAGTTAACTTGGGATTTTTGAGATATTGAAAAATTTTTCGGTTTTTTCAAAAAATCAATAATCCAATCAATGAGAAAAAAATCAAAAAATTGTTTTCCAAAATATCAATAAATTGTCTATTTATTGTTTTTAAATCTAAACAAACAAACAAAAACAGACAAAGTTATGATTTTTTGAAAATATAGCCATTTTTTGGTACGTTTTGGGCCATAACTCCCCAAAAAAATTTTATATCAACTATTTCTTTTGGATTCTAAAATTTCTTTTTACGCTCTTTTCAACCATATAGGTCTCAATTTTTTCAAGGGTAACACTTGGGAGTCATTCCATGTAAACTATTTTATTTGGAAAGGTCAACTCCTCAAGGGGCTTCCTTATGAAAAAAAATCGAGAAAAAAAATTATTTGTTCACCATTGGAGGTGCCGCGCCGCTAACAGTTGAGCTAATAGTAATGGGGCGCAAGTTGATACGGCTAAACGATGGCACACATAACAGCAATAACGAAAACTCATATTTCTGGAATTTTCTTCAATTATAGCCTCTTGAGGAGTTGAACTTGTGGACCTATCGATGAAGGTGCCGCGTCGCTACCAGCTAAGCTACGGTGGCACCGACCGTTGTCGTCTTTGAAACCGGCACCAGTGTTGAGCGGAAATACAATTTCGCTTGACGGAAGACGGAAGACGGAACAGGAAAATCCACGGAAGACGGAAAATCGTATAATTAAAATTGGAATTTTTGAATTGGACAATGTGGAAAGAATTTCGCAAAAGTTGTCTGAAAATTCCACGAATCCTGTTAGTATTCTGTTATTTGGAATTTATAAAGACGGAAGACGGAAAACGGAAGACGGAATTCTAAACATTGAGCGGCACCACA</canonical>
            <polymorphic>CCAAGTGCCAAAAATCGACATTTATTGGCATAACTTGTGTGAGCATGATTTCCCCCGGGGTATTGATATGTTTCTATAGTAAATCAAACGTGCTGAGTTCAATGGTCATAATAAGAAAAAAAGTTAACTTGGGATTTTTGAGATATTGAAAAATTTTTCGGTTTTTTCAAAAAATCAATAATCCAATCAATGAGAAAAAAATCAAAAAATTGTTTTCCAAAATATCAATAAATTGTCTATTTATTGTTTTTAAATCTAAACAAACAAACAAAAACAGACAAAGTTATGATTTTTTGAAAATATAGCCATTTTTTGGTACGTTTTGGGCCATAACTCCCCAAAAAAATTTTATATCAACTATTTCTTTTGGATTCTAAAATTTCTTTTTACGCTCTTTTCAACCATATAGGTCTCAATTTTTTCAAGGGTAACACTTGGGAGTCATTCCATGTAAACTATTTTATTTGGAAAGGTCAACTCCTCAAGGGGCTTCCTTATGYAAAAAAATCGAGAAAAAAAATTATTTGTTCACCATTGGAGGTGCCGCGCCGCTAACAGTTGAGCTAATAGTAATGGGGCGCAAGTTGATACGGCTAAACGATGGCACACATAACAGCAATAACGAAAACTCATATTTCTGGAATTTTCTTCAATTATAGCCTCTTGAGGAGTTGAACTTGTGGACCTATCGATGAAGGTGCCGCGTCGCTACCAGCTAAGCTACGGTGGCACCGACCGTTGTCGTCTTTGAAACCGGCACCAGTGTTGAGCGGAAATACAATTTCGCTTGACGGAAGACGGAAGACGGAACAGGAAAATCCACGGAAGACGGAAAATCGTATAATTAAAATTGGAATTTTTGAATTGGACAATGTGGAAAGAATTTCGCAAAAGTTGTCTGAAAATTCCACGAATCCTGTTAGTATTCTGTTATTTGGAATTTATAAAGACGGAAGACGGAAAACGGAAGACGGAATTCTAAACATTGAGCGGCACCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTAAAATCACAAAAACAAATG</pcr_primer_p1>
		<pcr_primer_p2>ATCGTTTAGCCGTATCAACTT</pcr_primer_p2>
		<pcr_amplicon_size>670</pcr_amplicon_size>
		<canonical_amplicon>GAAAAAAAATCGAGAAAAAAAATTATTTGTTCACCATTGGAGGTGCCGCGCCGCTAACAGTTGAGCTAATAGTAATGGGGCGCAAGTTGATACGGCTAAACGAT</canonical_amplicon>
		<polymorphic_amplicon>GYAAAAAAATCGAGAAAAAAAATTATTTGTTCACCATTGGAGGTGCCGCGCCGCTAACAGTTGAGCTAATAGTAATGGGGCGCAAGTTGATACGGCTAAACGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26763</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>544836</contig_pos>
        <strand>+</strand>
        <context>GATCATTTTC[A/T]GTTCTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATTGGCCAAATGCTGGATATGTGTTAGTCTGTGAGTTTTGATCATTTTC</left_flank>
        <right_flank>GTTCTTTTTGAAACGTTGAAGAGCATTTGAAATGCTGTGTTTTAGGTATA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAATTCATGTGTTTTCGGTTACATCGACTACGTCTTAATTCCTGCTTATAAGCAGTACTACAAAAACTTGTTTACTGTCTCCATCCATTTCTTGTATTAACATTCCCAATTTTTTTTACCCGGTACAACTGTTGTATTGATTATATTCCTATTTGCGAGCTTATAAGCTCACTGCTTATATCAGTCCGCCGGATGTAATTTTTTTTCTAAAATGGTCCATTTAATCCATATCTTCCAATACGTGAGCTTTGTTTTCTCTCAAATTACAAATGCGATTCTTCTGTATTTGATCTATAAAAAAACTAAAAAGTGTTTCGGTCCGTATAGATACATGATGGCCATATTTTCGATCTATGCCATAATCTATAACTATGTGGATTTAATGACCCAACCCTTGGTCCTAGTAGAAAAACAATTGTTTGTTGTGGTGAATCATGGTCCACTACGGTATTGGCCAAATGCTGGATATGTGTTAGTCTGTGAGTTTTGATCATTTTCTGTTCTTTTTGAAACGTTGAAGAGCATTTGAAATGCTGTGTTTTAGGTATATTTGGAGCATCATTTGGAATGTGCATTTCTCTTTTATCAGCTCAGTTTTTCTACCGCTACTTGGCACTATGCAAGTAGGATTTTTGCGAAATTTCTTTTCTTCTGATTTTTAGTTCATTCCAATTTTCAGACCCAACTTCCTAGCCCATTTCGAAGGCCCAAAACTAGCTATGTTATTCATCCCACCGCTCACACTCTCAATTACCTGGTTCTTTTTTTGCCTTCTTGGCCTTCAGATATCATCGGAAAAACGGAAAATCCTAGAAGCACCTCTTCATGACCAGTATGACGAGTATTCACAAAATGTGACATTCGTAGGTGGTTTGTATTGGAATACAGACCAGAATGGAGTGATTCATTGGAATATTCAAGATTGTATCGGAACGAGTGGCTTGTGTGTATTGATGGTGAGCCAAATACATAGAACAGAAGGAGTATGACAATTTTCAG</canonical>
            <polymorphic>CTAATTCATGTGTTTTCGGTTACATCGACTACGTCTTAATTCCTGCTTATAAGCAGTACTACAAAAACTTGTTTACTGTCTCCATCCATTTCTTGTATTAACATTCCCAATTTTTTTTACCCGGTACAACTGTTGTATTGATTATATTCCTATTTGCGAGCTTATAAGCTCACTGCTTATATCAGTCCGCCGGATGTAATTTTTTTTCTAAAATGGTCCATTTAATCCATATCTTCCAATACGTGAGCTTTGTTTTCTCTCAAATTACAAATGCGATTCTTCTGTATTTGATCTATAAAAAAACTAAAAAGTGTTTCGGTCCGTATAGATACATGATGGCCATATTTTCGATCTATGCCATAATCTATAACTATGTGGATTTAATGACCCAACCCTTGGTCCTAGTAGAAAAACAATTGTTTGTTGTGGTGAATCATGGTCCACTACGGTATTGGCCAAATGCTGGATATGTGTTAGTCTGTGAGTTTTGATCATTTTCWGTTCTTTTTGAAACGTTGAAGAGCATTTGAAATGCTGTGTTTTAGGTATATTTGGAGCATCATTTGGAATGTGCATTTCTCTTTTATCAGCTCAGTTTTTCTACCGCTACTTGGCACTATGCAAGTAGGATTTTTGCGAAATTTCTTTTCTTCTGATTTTTAGTTCATTCCAATTTTCAGACCCAACTTCCTAGCCCATTTCGAAGGCCCAAAACTAGCTATGTTATTCATCCCACCGCTCACACTCTCAATTACCTGGTTCTTTTTTTGCCTTCTTGGCCTTCAGATATCATCGGAAAAACGGAAAATCCTAGAAGCACCTCTTCATGACCAGTATGACGAGTATTCACAAAATGTGACATTCGTAGGTGGTTTGTATTGGAATACAGACCAGAATGGAGTGATTCATTGGAATATTCAAGATTGTATCGGAACGAGTGGCTTGTGTGTATTGATGGTGAGCCAAATACATAGAACAGAAGGAGTATGACAATTTTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTCGGTCCGTATAGATACAT</pcr_primer_p1>
		<pcr_primer_p2>TGCTCCAAATATACCTAAAACAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTTTCGGTCCGTATAGATACATGATGGCCATATTTTCGATCTATGCCATAATCTATAACTATGTGGATTTAATGACCCAACCCTTGGTCCTAGTAGAAAAACAATTGTTTGTTGTGGTGAATCATGGTCCACTACGGTATTGGCCAAATGCTGGATATGTGTTAGTCTGTGAGTTTTGATCATTTTCTGTTCTTTTTGAAACGTTGAAGAGCATTTGAAATGCTGTGTTTTAGGTATATTTGGAGCA</canonical_amplicon>
		<polymorphic_amplicon>GTTTCGGTCCGTATAGATACATGATGGCCATATTTTCGATCTATGCCATAATCTATAACTATGTGGATTTAATGACCCAACCCTTGGTCCTAGTAGAAAAACAATTGTTTGTTGTGGTGAATCATGGTCCACTACGGTATTGGCCAAATGCTGGATATGTGTTAGTCTGTGAGTTTTGATCATTTTCWGTTCTTTTTGAAACGTTGAAGAGCATTTGAAATGCTGTGTTTTAGGTATATTTGGAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26764</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>545038</contig_pos>
        <strand>+</strand>
        <context>TAGCCCATTT[A/C]GAAGGCCCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTGATTTTTAGTTCATTCCAATTTTCAGACCCAACTTCCTAGCCCATTT</left_flank>
        <right_flank>GAAGGCCCAAAACTAGCTATGTTATTCATCCCACCGCTCACACTCTCAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTCTAAAATGGTCCATTTAATCCATATCTTCCAATACGTGAGCTTTGTTTTCTCTCAAATTACAAATGCGATTCTTCTGTATTTGATCTATAAAAAAACTAAAAAGTGTTTCGGTCCGTATAGATACATGATGGCCATATTTTCGATCTATGCCATAATCTATAACTATGTGGATTTAATGACCCAACCCTTGGTCCTAGTAGAAAAACAATTGTTTGTTGTGGTGAATCATGGTCCACTACGGTATTGGCCAAATGCTGGATATGTGTTAGTCTGTGAGTTTTGATCATTTTCTGTTCTTTTTGAAACGTTGAAGAGCATTTGAAATGCTGTGTTTTAGGTATATTTGGAGCATCATTTGGAATGTGCATTTCTCTTTTATCAGCTCAGTTTTTCTACCGCTACTTGGCACTATGCAAGTAGGATTTTTGCGAAATTTCTTTTCTTCTGATTTTTAGTTCATTCCAATTTTCAGACCCAACTTCCTAGCCCATTTCGAAGGCCCAAAACTAGCTATGTTATTCATCCCACCGCTCACACTCTCAATTACCTGGTTCTTTTTTTGCCTTCTTGGCCTTCAGATATCATCGGAAAAACGGAAAATCCTAGAAGCACCTCTTCATGACCAGTATGACGAGTATTCACAAAATGTGACATTCGTAGGTGGTTTGTATTGGAATACAGACCAGAATGGAGTGATTCATTGGAATATTCAAGATTGTATCGGAACGAGTGGCTTGTGTGTATTGATGGTGAGCCAAATACATAGAACAGAAGGAGTATGACAATTTTCAGTCACTTTGTTGTATGACGATTCTATTTTGCGGCGTCAACACCTACAAGAAAATGAATGAAGTGGGTGACACACTAAGTGATAGAACCAAGGATCTCAATAGACAACTTTTTATTACGTTGAGTTTACAGGTGCGCCCACGAGCAACAGAATGTTAAGCTCACTAGGCTTTTTTCAAACTCTCCTTCCATTTGTTCTCATGTA</canonical>
            <polymorphic>TTTTTCTAAAATGGTCCATTTAATCCATATCTTCCAATACGTGAGCTTTGTTTTCTCTCAAATTACAAATGCGATTCTTCTGTATTTGATCTATAAAAAAACTAAAAAGTGTTTCGGTCCGTATAGATACATGATGGCCATATTTTCGATCTATGCCATAATCTATAACTATGTGGATTTAATGACCCAACCCTTGGTCCTAGTAGAAAAACAATTGTTTGTTGTGGTGAATCATGGTCCACTACGGTATTGGCCAAATGCTGGATATGTGTTAGTCTGTGAGTTTTGATCATTTTCTGTTCTTTTTGAAACGTTGAAGAGCATTTGAAATGCTGTGTTTTAGGTATATTTGGAGCATCATTTGGAATGTGCATTTCTCTTTTATCAGCTCAGTTTTTCTACCGCTACTTGGCACTATGCAAGTAGGATTTTTGCGAAATTTCTTTTCTTCTGATTTTTAGTTCATTCCAATTTTCAGACCCAACTTCCTAGCCCATTTMGAAGGCCCAAAACTAGCTATGTTATTCATCCCACCGCTCACACTCTCAATTACCTGGTTCTTTTTTTGCCTTCTTGGCCTTCAGATATCATCGGAAAAACGGAAAATCCTAGAAGCACCTCTTCATGACCAGTATGACGAGTATTCACAAAATGTGACATTCGTAGGTGGTTTGTATTGGAATACAGACCAGAATGGAGTGATTCATTGGAATATTCAAGATTGTATCGGAACGAGTGGCTTGTGTGTATTGATGGTGAGCCAAATACATAGAACAGAAGGAGTATGACAATTTTCAGTCACTTTGTTGTATGACGATTCTATTTTGCGGCGTCAACACCTACAAGAAAATGAATGAAGTGGGTGACACACTAAGTGATAGAACCAAGGATCTCAATAGACAACTTTTTATTACGTTGAGTTTACAGGTGCGCCCACGAGCAACAGAATGTTAAGCTCACTAGGCTTTTTTCAAACTCTCCTTCCATTTGTTCTCATGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 353 147</canonical_bands>
                <polymorphic_bands>853 147</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAAATTTCTTTTCTTCTGATTT</pcr_primer_p1>
		<pcr_primer_p2>GTATTCCAATACAAACCACCTAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CGAAATTTCTTTTCTTCTGATTTTTAGTTCATTCCAATTTTCAGACCCAACTTCCTAGCCCATTTCGAAGGCCCAAAACTAGCTATGTTATTCATCCCACCGCTCACACTCTCAATTACCTGGTTCTTTTTTTGCCTTCTTGGCCTTCAGATATCATCGGAAAAACGGAAAATCCTAGAAGCACCTCTTCATGACCAGTATGACGAGTATTCACAAAATGTGACATTCGTAGGTGGTTTGTATTGGAATAC</canonical_amplicon>
		<polymorphic_amplicon>CGAAATTTCTTTTCTTCTGATTTTTAGTTCATTCCAATTTTCAGACCCAACTTCCTAGCCCATTTMGAAGGCCCAAAACTAGCTATGTTATTCATCCCACCGCTCACACTCTCAATTACCTGGTTCTTTTTTTGCCTTCTTGGCCTTCAGATATCATCGGAAAAACGGAAAATCCTAGAAGCACCTCTTCATGACCAGTATGACGAGTATTCACAAAATGTGACATTCGTAGGTGGTTTGTATTGGAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26765</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>555068</contig_pos>
        <strand>+</strand>
        <context>TCATCATTTT[A/C]TTCTTTAGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTTTTTCTGTCTCCAGAATGTATCAAGCAGCTGCCTGTGTCATCATTTT</left_flank>
        <right_flank>TTCTTTAGTCCGATGTTACCACTTCACGTTTATACAGTTGGCCTACCGCT</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGGGCCTTCCGGGCCGGGCCGGGCCAACGTTTTGGAGGCCCGGTTCGGCACGGCACGGCCCGGCCCAGCCCGTTGCAAGTGTGCTGAGCTGGACCGCTATGTACTCGACTTGAGCCATTTTATTTCTGTTCCTGGGACAGATATCAAAAAGTAATCAACTGGAAAATTGTTTCAAATTCTATACTAAATATTTTATCAATTTACCACTTCTTGATATCTTAAAAATAAAACGAGATATATTGATTCAAAGTTGACGGAGGTGCCGCGTTGCTACCAGTTGAGCTACAGAAGCAGAAATTGCCTCTTTTAAAAACATTAACCAATGTTCCCAATTTTCAGATATTTATTGATATTTGTCATTGCTCTCATCTGCGGTATCTCCGATTGCTGCTTCAATGGAGTTCGTTCTGTGATTTGTGCCCTTGTCATGCCATCCAGAAGAGCTCAATCTTTTTCTGTCTCCAGAATGTATCAAGCAGCTGCCTGTGTCATCATTTTCTTCTTTAGTCCGATGTTACCACTTCACGTTTATACAGTTGGCCTACCGCTTCTAGCCATTTTATCTACTTTTGTATTTTTCAAAGTGGTTAATAGTACGGAACGAATGGAAAGGAAACTGACAAGCGATACAAATTTGGAGCAAGAGAAGATTTGAATAATTATTTATTTCGTACATAAGATTGAAGTCATATGAAAAGATTAAACAACAAAAAACGCTTTCGAATTCTCCACATCTCCGTCCAGATAGTCTCGATAATATCTAACGGTTTTTGCAGCCATAATTTCATCATTTTCCTTGTTTGTCATATAAATTTTATACCGATGAACTTTACAAACATCAAATTGTTCTTTAAGAACCAGAAATATAATGCAAAGTAGTAAAATGCACATTAAAGCAAATACAGTTATGCCAAATATAGTTGAAGTGTTATGCAGATGAATTAATGAAAAACTTGGCATGGCGGATATTGTTTTTCCAGTAGGAGCGTACATTTTGAT</canonical>
            <polymorphic>CCGGGCCTTCCGGGCCGGGCCGGGCCAACGTTTTGGAGGCCCGGTTCGGCACGGCACGGCCCGGCCCAGCCCGTTGCAAGTGTGCTGAGCTGGACCGCTATGTACTCGACTTGAGCCATTTTATTTCTGTTCCTGGGACAGATATCAAAAAGTAATCAACTGGAAAATTGTTTCAAATTCTATACTAAATATTTTATCAATTTACCACTTCTTGATATCTTAAAAATAAAACGAGATATATTGATTCAAAGTTGACGGAGGTGCCGCGTTGCTACCAGTTGAGCTACAGAAGCAGAAATTGCCTCTTTTAAAAACATTAACCAATGTTCCCAATTTTCAGATATTTATTGATATTTGTCATTGCTCTCATCTGCGGTATCTCCGATTGCTGCTTCAATGGAGTTCGTTCTGTGATTTGTGCCCTTGTCATGCCATCCAGAAGAGCTCAATCTTTTTCTGTCTCCAGAATGTATCAAGCAGCTGCCTGTGTCATCATTTTMTTCTTTAGTCCGATGTTACCACTTCACGTTTATACAGTTGGCCTACCGCTTCTAGCCATTTTATCTACTTTTGTATTTTTCAAAGTGGTTAATAGTACGGAACGAATGGAAAGGAAACTGACAAGCGATACAAATTTGGAGCAAGAGAAGATTTGAATAATTATTTATTTCGTACATAAGATTGAAGTCATATGAAAAGATTAAACAACAAAAAACGCTTTCGAATTCTCCACATCTCCGTCCAGATAGTCTCGATAATATCTAACGGTTTTTGCAGCCATAATTTCATCATTTTCCTTGTTTGTCATATAAATTTTATACCGATGAACTTTACAAACATCAAATTGTTCTTTAAGAACCAGAAATATAATGCAAAGTAGTAAAATGCACATTAAAGCAAATACAGTTATGCCAAATATAGTTGAAGTGTTATGCAGATGAATTAATGAAAAACTTGGCATGGCGGATATTGTTTTTCCAGTAGGAGCGTACATTTTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGCTCAATCTTTTTCTGTCTC</pcr_primer_p1>
		<pcr_primer_p2>TGACTTCAATCTTATGTACGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAGCTCAATCTTTTTCTGTCTCCAGAATGTATCAAGCAGCTGCCTGTGTCATCATTTTCTTCTTTAGTCCGATGTTACCACTTCACGTTTATACAGTTGGCCTACCGCTTCTAGCCATTTTATCTACTTTTGTATTTTTCAAAGTGGTTAATAGTACGGAACGAATGGAAAGGAAACTGACAAGCGATACAAATTTGGAGCAAGAGAAGATTTGAATAATTATTTATTTCGTACATAAGATTGAAGTCA</canonical_amplicon>
		<polymorphic_amplicon>AGAGCTCAATCTTTTTCTGTCTCCAGAATGTATCAAGCAGCTGCCTGTGTCATCATTTTMTTCTTTAGTCCGATGTTACCACTTCACGTTTATACAGTTGGCCTACCGCTTCTAGCCATTTTATCTACTTTTGTATTTTTCAAAGTGGTTAATAGTACGGAACGAATGGAAAGGAAACTGACAAGCGATACAAATTTGGAGCAAGAGAAGATTTGAATAATTATTTATTTCGTACATAAGATTGAAGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26766</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>555155</contig_pos>
        <strand>+</strand>
        <context>TTTTCAAAGT[G/T]GTTAATAGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTGGCCTACCGCTTCTAGCCATTTTATCTACTTTTGTATTTTTCAAAGT</left_flank>
        <right_flank>GTTAATAGTACGGAACGAATGGAAAGGAAACTGACAAGCGATACAAATTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTGGACCGCTATGTACTCGACTTGAGCCATTTTATTTCTGTTCCTGGGACAGATATCAAAAAGTAATCAACTGGAAAATTGTTTCAAATTCTATACTAAATATTTTATCAATTTACCACTTCTTGATATCTTAAAAATAAAACGAGATATATTGATTCAAAGTTGACGGAGGTGCCGCGTTGCTACCAGTTGAGCTACAGAAGCAGAAATTGCCTCTTTTAAAAACATTAACCAATGTTCCCAATTTTCAGATATTTATTGATATTTGTCATTGCTCTCATCTGCGGTATCTCCGATTGCTGCTTCAATGGAGTTCGTTCTGTGATTTGTGCCCTTGTCATGCCATCCAGAAGAGCTCAATCTTTTTCTGTCTCCAGAATGTATCAAGCAGCTGCCTGTGTCATCATTTTCTTCTTTAGTCCGATGTTACCACTTCACGTTTATACAGTTGGCCTACCGCTTCTAGCCATTTTATCTACTTTTGTATTTTTCAAAGTGGTTAATAGTACGGAACGAATGGAAAGGAAACTGACAAGCGATACAAATTTGGAGCAAGAGAAGATTTGAATAATTATTTATTTCGTACATAAGATTGAAGTCATATGAAAAGATTAAACAACAAAAAACGCTTTCGAATTCTCCACATCTCCGTCCAGATAGTCTCGATAATATCTAACGGTTTTTGCAGCCATAATTTCATCATTTTCCTTGTTTGTCATATAAATTTTATACCGATGAACTTTACAAACATCAAATTGTTCTTTAAGAACCAGAAATATAATGCAAAGTAGTAAAATGCACATTAAAGCAAATACAGTTATGCCAAATATAGTTGAAGTGTTATGCAGATGAATTAATGAAAAACTTGGCATGGCGGATATTGTTTTTCCAGTAGGAGCGTACATTTTGATTCTGAGGATTCGGGAAGAAAGCAATGCTCTTATAACAAGACACACGTTTTTTCGTGACGCAAATATCTGGGCATGATCTGGATTGAA</canonical>
            <polymorphic>AGCTGGACCGCTATGTACTCGACTTGAGCCATTTTATTTCTGTTCCTGGGACAGATATCAAAAAGTAATCAACTGGAAAATTGTTTCAAATTCTATACTAAATATTTTATCAATTTACCACTTCTTGATATCTTAAAAATAAAACGAGATATATTGATTCAAAGTTGACGGAGGTGCCGCGTTGCTACCAGTTGAGCTACAGAAGCAGAAATTGCCTCTTTTAAAAACATTAACCAATGTTCCCAATTTTCAGATATTTATTGATATTTGTCATTGCTCTCATCTGCGGTATCTCCGATTGCTGCTTCAATGGAGTTCGTTCTGTGATTTGTGCCCTTGTCATGCCATCCAGAAGAGCTCAATCTTTTTCTGTCTCCAGAATGTATCAAGCAGCTGCCTGTGTCATCATTTTCTTCTTTAGTCCGATGTTACCACTTCACGTTTATACAGTTGGCCTACCGCTTCTAGCCATTTTATCTACTTTTGTATTTTTCAAAGTKGTTAATAGTACGGAACGAATGGAAAGGAAACTGACAAGCGATACAAATTTGGAGCAAGAGAAGATTTGAATAATTATTTATTTCGTACATAAGATTGAAGTCATATGAAAAGATTAAACAACAAAAAACGCTTTCGAATTCTCCACATCTCCGTCCAGATAGTCTCGATAATATCTAACGGTTTTTGCAGCCATAATTTCATCATTTTCCTTGTTTGTCATATAAATTTTATACCGATGAACTTTACAAACATCAAATTGTTCTTTAAGAACCAGAAATATAATGCAAAGTAGTAAAATGCACATTAAAGCAAATACAGTTATGCCAAATATAGTTGAAGTGTTATGCAGATGAATTAATGAAAAACTTGGCATGGCGGATATTGTTTTTCCAGTAGGAGCGTACATTTTGATTCTGAGGATTCGGGAAGAAAGCAATGCTCTTATAACAAGACACACGTTTTTTCGTGACGCAAATATCTGGGCATGATCTGGATTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>157 150 145 120 113 69 61 56 40 32 31 12 7 5 2</canonical_bands>
                <polymorphic_bands>206 157 150 120 113 69 56 40 32 31 12 7 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGCTCAATCTTTTTCTGTCTC</pcr_primer_p1>
		<pcr_primer_p2>TGACTTCAATCTTATGTACGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAGCTCAATCTTTTTCTGTCTCCAGAATGTATCAAGCAGCTGCCTGTGTCATCATTTTCTTCTTTAGTCCGATGTTACCACTTCACGTTTATACAGTTGGCCTACCGCTTCTAGCCATTTTATCTACTTTTGTATTTTTCAAAGTGGTTAATAGTACGGAACGAATGGAAAGGAAACTGACAAGCGATACAAATTTGGAGCAAGAGAAGATTTGAATAATTATTTATTTCGTACATAAGATTGAAGTCA</canonical_amplicon>
		<polymorphic_amplicon>AGAGCTCAATCTTTTTCTGTCTCCAGAATGTATCAAGCAGCTGCCTGTGTCATCATTTTCTTCTTTAGTCCGATGTTACCACTTCACGTTTATACAGTTGGCCTACCGCTTCTAGCCATTTTATCTACTTTTGTATTTTTCAAAGTKGTTAATAGTACGGAACGAATGGAAAGGAAACTGACAAGCGATACAAATTTGGAGCAAGAGAAGATTTGAATAATTATTTATTTCGTACATAAGATTGAAGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26767</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>555296</contig_pos>
        <strand>+</strand>
        <context>CTTTCGAATT[C/T]TCCACATCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGATTGAAGTCATATGAAAAGATTAAACAACAAAAAACGCTTTCGAATT</left_flank>
        <right_flank>TCCACATCTCCGTCCAGATAGTCTCGATAATATCTAACGGTTTTTGCAGC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACGAGATATATTGATTCAAAGTTGACGGAGGTGCCGCGTTGCTACCAGTTGAGCTACAGAAGCAGAAATTGCCTCTTTTAAAAACATTAACCAATGTTCCCAATTTTCAGATATTTATTGATATTTGTCATTGCTCTCATCTGCGGTATCTCCGATTGCTGCTTCAATGGAGTTCGTTCTGTGATTTGTGCCCTTGTCATGCCATCCAGAAGAGCTCAATCTTTTTCTGTCTCCAGAATGTATCAAGCAGCTGCCTGTGTCATCATTTTCTTCTTTAGTCCGATGTTACCACTTCACGTTTATACAGTTGGCCTACCGCTTCTAGCCATTTTATCTACTTTTGTATTTTTCAAAGTGGTTAATAGTACGGAACGAATGGAAAGGAAACTGACAAGCGATACAAATTTGGAGCAAGAGAAGATTTGAATAATTATTTATTTCGTACATAAGATTGAAGTCATATGAAAAGATTAAACAACAAAAAACGCTTTCGAATTCTCCACATCTCCGTCCAGATAGTCTCGATAATATCTAACGGTTTTTGCAGCCATAATTTCATCATTTTCCTTGTTTGTCATATAAATTTTATACCGATGAACTTTACAAACATCAAATTGTTCTTTAAGAACCAGAAATATAATGCAAAGTAGTAAAATGCACATTAAAGCAAATACAGTTATGCCAAATATAGTTGAAGTGTTATGCAGATGAATTAATGAAAAACTTGGCATGGCGGATATTGTTTTTCCAGTAGGAGCGTACATTTTGATTCTGAGGATTCGGGAAGAAAGCAATGCTCTTATAACAAGACACACGTTTTTTCGTGACGCAAATATCTGGGCATGATCTGGATTGAACTTCTTATCAGAGGTCTACTTTCGCTGAGCAGTTCATAAATTACGTAGTGTTTGGATTTCTCATTACTGGAAAAATTGAATCACGATACAAAATGAAGTGGCGTCTTCGGTTATTATTTCAAGATGACATCACAACTTTTT</canonical>
            <polymorphic>AAACGAGATATATTGATTCAAAGTTGACGGAGGTGCCGCGTTGCTACCAGTTGAGCTACAGAAGCAGAAATTGCCTCTTTTAAAAACATTAACCAATGTTCCCAATTTTCAGATATTTATTGATATTTGTCATTGCTCTCATCTGCGGTATCTCCGATTGCTGCTTCAATGGAGTTCGTTCTGTGATTTGTGCCCTTGTCATGCCATCCAGAAGAGCTCAATCTTTTTCTGTCTCCAGAATGTATCAAGCAGCTGCCTGTGTCATCATTTTCTTCTTTAGTCCGATGTTACCACTTCACGTTTATACAGTTGGCCTACCGCTTCTAGCCATTTTATCTACTTTTGTATTTTTCAAAGTGGTTAATAGTACGGAACGAATGGAAAGGAAACTGACAAGCGATACAAATTTGGAGCAAGAGAAGATTTGAATAATTATTTATTTCGTACATAAGATTGAAGTCATATGAAAAGATTAAACAACAAAAAACGCTTTCGAATTYTCCACATCTCCGTCCAGATAGTCTCGATAATATCTAACGGTTTTTGCAGCCATAATTTCATCATTTTCCTTGTTTGTCATATAAATTTTATACCGATGAACTTTACAAACATCAAATTGTTCTTTAAGAACCAGAAATATAATGCAAAGTAGTAAAATGCACATTAAAGCAAATACAGTTATGCCAAATATAGTTGAAGTGTTATGCAGATGAATTAATGAAAAACTTGGCATGGCGGATATTGTTTTTCCAGTAGGAGCGTACATTTTGATTCTGAGGATTCGGGAAGAAAGCAATGCTCTTATAACAAGACACACGTTTTTTCGTGACGCAAATATCTGGGCATGATCTGGATTGAACTTCTTATCAGAGGTCTACTTTCGCTGAGCAGTTCATAAATTACGTAGTGTTTGGATTTCTCATTACTGGAAAAATTGAATCACGATACAAAATGAAGTGGCGTCTTCGGTTATTATTTCAAGATGACATCACAACTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>417 404 91 88</canonical_bands>
                <polymorphic_bands>417 404 179</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACAAATTTGGAGCAAGAGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTGCATTATATTTCTGGTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATACAAATTTGGAGCAAGAGAAGATTTGAATAATTATTTATTTCGTACATAAGATTGAAGTCATATGAAAAGATTAAACAACAAAAAACGCTTTCGAATTCTCCACATCTCCGTCCAGATAGTCTCGATAATATCTAACGGTTTTTGCAGCCATAATTTCATCATTTTCCTTGTTTGTCATATAAATTTTATACCGATGAACTTTACAAACATCAAATTGTTCTTTAAGAACCAGAAATATAATGCAAA</canonical_amplicon>
		<polymorphic_amplicon>ATACAAATTTGGAGCAAGAGAAGATTTGAATAATTATTTATTTCGTACATAAGATTGAAGTCATATGAAAAGATTAAACAACAAAAAACGCTTTCGAATTYTCCACATCTCCGTCCAGATAGTCTCGATAATATCTAACGGTTTTTGCAGCCATAATTTCATCATTTTCCTTGTTTGTCATATAAATTTTATACCGATGAACTTTACAAACATCAAATTGTTCTTTAAGAACCAGAAATATAATGCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26768</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>555583</contig_pos>
        <strand>+</strand>
        <context>AGGATTCGGG[A/G]AGAAAGCAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGATATTGTTTTTCCAGTAGGAGCGTACATTTTGATTCTGAGGATTCGGG</left_flank>
        <right_flank>AGAAAGCAATGCTCTTATAACAAGACACACGTTTTTTCGTGACGCAAATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACCACTTCACGTTTATACAGTTGGCCTACCGCTTCTAGCCATTTTATCTACTTTTGTATTTTTCAAAGTGGTTAATAGTACGGAACGAATGGAAAGGAAACTGACAAGCGATACAAATTTGGAGCAAGAGAAGATTTGAATAATTATTTATTTCGTACATAAGATTGAAGTCATATGAAAAGATTAAACAACAAAAAACGCTTTCGAATTCTCCACATCTCCGTCCAGATAGTCTCGATAATATCTAACGGTTTTTGCAGCCATAATTTCATCATTTTCCTTGTTTGTCATATAAATTTTATACCGATGAACTTTACAAACATCAAATTGTTCTTTAAGAACCAGAAATATAATGCAAAGTAGTAAAATGCACATTAAAGCAAATACAGTTATGCCAAATATAGTTGAAGTGTTATGCAGATGAATTAATGAAAAACTTGGCATGGCGGATATTGTTTTTCCAGTAGGAGCGTACATTTTGATTCTGAGGATTCGGGAAGAAAGCAATGCTCTTATAACAAGACACACGTTTTTTCGTGACGCAAATATCTGGGCATGATCTGGATTGAACTTCTTATCAGAGGTCTACTTTCGCTGAGCAGTTCATAAATTACGTAGTGTTTGGATTTCTCATTACTGGAAAAATTGAATCACGATACAAAATGAAGTGGCGTCTTCGGTTATTATTTCAAGATGACATCACAACTTTTTGTGACTGAACTCATCTGAATCATTCGAAGGAATGACAAGAGATAAAATACAACTCCATGCCAATGATTTTATTGTGACCTCAATTATTTTGGTTGATTTTCTGCCATGTACAAGAGTCCGGAGCTCGGCGGTTAAGCTGTCAATCACTCTGAAATTTTTGGAGGGTGCAAAACAGACCTACTGTATTTCCTTTAATACATACTTGTAACGGGCCGGGCCGGGTCGGGCTTTTTCCCGAACTTTGGAGGCCCGGCCCGGCAGGCCTGTCATTCCACAAGTTTTGAAAA</canonical>
            <polymorphic>TTACCACTTCACGTTTATACAGTTGGCCTACCGCTTCTAGCCATTTTATCTACTTTTGTATTTTTCAAAGTGGTTAATAGTACGGAACGAATGGAAAGGAAACTGACAAGCGATACAAATTTGGAGCAAGAGAAGATTTGAATAATTATTTATTTCGTACATAAGATTGAAGTCATATGAAAAGATTAAACAACAAAAAACGCTTTCGAATTCTCCACATCTCCGTCCAGATAGTCTCGATAATATCTAACGGTTTTTGCAGCCATAATTTCATCATTTTCCTTGTTTGTCATATAAATTTTATACCGATGAACTTTACAAACATCAAATTGTTCTTTAAGAACCAGAAATATAATGCAAAGTAGTAAAATGCACATTAAAGCAAATACAGTTATGCCAAATATAGTTGAAGTGTTATGCAGATGAATTAATGAAAAACTTGGCATGGCGGATATTGTTTTTCCAGTAGGAGCGTACATTTTGATTCTGAGGATTCGGGRAGAAAGCAATGCTCTTATAACAAGACACACGTTTTTTCGTGACGCAAATATCTGGGCATGATCTGGATTGAACTTCTTATCAGAGGTCTACTTTCGCTGAGCAGTTCATAAATTACGTAGTGTTTGGATTTCTCATTACTGGAAAAATTGAATCACGATACAAAATGAAGTGGCGTCTTCGGTTATTATTTCAAGATGACATCACAACTTTTTGTGACTGAACTCATCTGAATCATTCGAAGGAATGACAAGAGATAAAATACAACTCCATGCCAATGATTTTATTGTGACCTCAATTATTTTGGTTGATTTTCTGCCATGTACAAGAGTCCGGAGCTCGGCGGTTAAGCTGTCAATCACTCTGAAATTTTTGGAGGGTGCAAAACAGACCTACTGTATTTCCTTTAATACATACTTGTAACGGGCCGGGCCGGGTCGGGCTTTTTCCCGAACTTTGGAGGCCCGGCCCGGCAGGCCTGTCATTCCACAAGTTTTGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>260 227 139 116 91 53 42 38 25 9</canonical_bands>
                <polymorphic_bands>302 227 139 116 91 53 38 25 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGTTGAAGTGTTATGCAGATGA</pcr_primer_p1>
		<pcr_primer_p2>GATTCAATTTTTCCAGTAATGAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAGTTGAAGTGTTATGCAGATGAATTAATGAAAAACTTGGCATGGCGGATATTGTTTTTCCAGTAGGAGCGTACATTTTGATTCTGAGGATTCGGGAAGAAAGCAATGCTCTTATAACAAGACACACGTTTTTTCGTGACGCAAATATCTGGGCATGATCTGGATTGAACTTCTTATCAGAGGTCTACTTTCGCTGAGCAGTTCATAAATTACGTAGTGTTTGGATTTCTCATTACTGGAAAAATTGAATC</canonical_amplicon>
		<polymorphic_amplicon>TAGTTGAAGTGTTATGCAGATGAATTAATGAAAAACTTGGCATGGCGGATATTGTTTTTCCAGTAGGAGCGTACATTTTGATTCTGAGGATTCGGGRAGAAAGCAATGCTCTTATAACAAGACACACGTTTTTTCGTGACGCAAATATCTGGGCATGATCTGGATTGAACTTCTTATCAGAGGTCTACTTTCGCTGAGCAGTTCATAAATTACGTAGTGTTTGGATTTCTCATTACTGGAAAAATTGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26769</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>555609</contig_pos>
        <strand>+</strand>
        <context>TATAACAAGA[C/G]ACACGTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACATTTTGATTCTGAGGATTCGGGAAGAAAGCAATGCTCTTATAACAAGA</left_flank>
        <right_flank>ACACGTTTTTTCGTGACGCAAATATCTGGGCATGATCTGGATTGAACTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTACCGCTTCTAGCCATTTTATCTACTTTTGTATTTTTCAAAGTGGTTAATAGTACGGAACGAATGGAAAGGAAACTGACAAGCGATACAAATTTGGAGCAAGAGAAGATTTGAATAATTATTTATTTCGTACATAAGATTGAAGTCATATGAAAAGATTAAACAACAAAAAACGCTTTCGAATTCTCCACATCTCCGTCCAGATAGTCTCGATAATATCTAACGGTTTTTGCAGCCATAATTTCATCATTTTCCTTGTTTGTCATATAAATTTTATACCGATGAACTTTACAAACATCAAATTGTTCTTTAAGAACCAGAAATATAATGCAAAGTAGTAAAATGCACATTAAAGCAAATACAGTTATGCCAAATATAGTTGAAGTGTTATGCAGATGAATTAATGAAAAACTTGGCATGGCGGATATTGTTTTTCCAGTAGGAGCGTACATTTTGATTCTGAGGATTCGGGAAGAAAGCAATGCTCTTATAACAAGACACACGTTTTTTCGTGACGCAAATATCTGGGCATGATCTGGATTGAACTTCTTATCAGAGGTCTACTTTCGCTGAGCAGTTCATAAATTACGTAGTGTTTGGATTTCTCATTACTGGAAAAATTGAATCACGATACAAAATGAAGTGGCGTCTTCGGTTATTATTTCAAGATGACATCACAACTTTTTGTGACTGAACTCATCTGAATCATTCGAAGGAATGACAAGAGATAAAATACAACTCCATGCCAATGATTTTATTGTGACCTCAATTATTTTGGTTGATTTTCTGCCATGTACAAGAGTCCGGAGCTCGGCGGTTAAGCTGTCAATCACTCTGAAATTTTTGGAGGGTGCAAAACAGACCTACTGTATTTCCTTTAATACATACTTGTAACGGGCCGGGCCGGGTCGGGCTTTTTCCCGAACTTTGGAGGCCCGGCCCGGCAGGCCTGTCATTCCACAAGTTTTGAAAATTTCAAAAAACATGCCGGGTTCGGGC</canonical>
            <polymorphic>CCTACCGCTTCTAGCCATTTTATCTACTTTTGTATTTTTCAAAGTGGTTAATAGTACGGAACGAATGGAAAGGAAACTGACAAGCGATACAAATTTGGAGCAAGAGAAGATTTGAATAATTATTTATTTCGTACATAAGATTGAAGTCATATGAAAAGATTAAACAACAAAAAACGCTTTCGAATTCTCCACATCTCCGTCCAGATAGTCTCGATAATATCTAACGGTTTTTGCAGCCATAATTTCATCATTTTCCTTGTTTGTCATATAAATTTTATACCGATGAACTTTACAAACATCAAATTGTTCTTTAAGAACCAGAAATATAATGCAAAGTAGTAAAATGCACATTAAAGCAAATACAGTTATGCCAAATATAGTTGAAGTGTTATGCAGATGAATTAATGAAAAACTTGGCATGGCGGATATTGTTTTTCCAGTAGGAGCGTACATTTTGATTCTGAGGATTCGGGAAGAAAGCAATGCTCTTATAACAAGASACACGTTTTTTCGTGACGCAAATATCTGGGCATGATCTGGATTGAACTTCTTATCAGAGGTCTACTTTCGCTGAGCAGTTCATAAATTACGTAGTGTTTGGATTTCTCATTACTGGAAAAATTGAATCACGATACAAAATGAAGTGGCGTCTTCGGTTATTATTTCAAGATGACATCACAACTTTTTGTGACTGAACTCATCTGAATCATTCGAAGGAATGACAAGAGATAAAATACAACTCCATGCCAATGATTTTATTGTGACCTCAATTATTTTGGTTGATTTTCTGCCATGTACAAGAGTCCGGAGCTCGGCGGTTAAGCTGTCAATCACTCTGAAATTTTTGGAGGGTGCAAAACAGACCTACTGTATTTCCTTTAATACATACTTGTAACGGGCCGGGCCGGGTCGGGCTTTTTCCCGAACTTTGGAGGCCCGGCCCGGCAGGCCTGTCATTCCACAAGTTTTGAAAATTTCAAAAAACATGCCGGGTTCGGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>157 145 113 107 81 73 70 46 40 39 33 32 21 17 12 12 2</canonical_bands>
                <polymorphic_bands>157 145 115 107 81 73 70 46 40 39 33 32 21 17 12 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATATTGTTTTTCCAGTAGGAG</pcr_primer_p1>
		<pcr_primer_p2>CATCTTGAAATAATAACCGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGATATTGTTTTTCCAGTAGGAGCGTACATTTTGATTCTGAGGATTCGGGAAGAAAGCAATGCTCTTATAACAAGACACACGTTTTTTCGTGACGCAAATATCTGGGCATGATCTGGATTGAACTTCTTATCAGAGGTCTACTTTCGCTGAGCAGTTCATAAATTACGTAGTGTTTGGATTTCTCATTACTGGAAAAATTGAATCACGATACAAAATGAAGTGGCGTCTTCGGTTATTATTTCAAGATG</canonical_amplicon>
		<polymorphic_amplicon>GGATATTGTTTTTCCAGTAGGAGCGTACATTTTGATTCTGAGGATTCGGGAAGAAAGCAATGCTCTTATAACAAGASACACGTTTTTTCGTGACGCAAATATCTGGGCATGATCTGGATTGAACTTCTTATCAGAGGTCTACTTTCGCTGAGCAGTTCATAAATTACGTAGTGTTTGGATTTCTCATTACTGGAAAAATTGAATCACGATACAAAATGAAGTGGCGTCTTCGGTTATTATTTCAAGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26770</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>558658</contig_pos>
        <strand>+</strand>
        <context>ATTAAAAAAA[A/G]AGGAGACATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAA</left_flank>
        <right_flank>AGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACGTACATAGACATTATCCGAATATCCTGTATTGGGGTAAGAGAGATAATTCCTTCATCATCGGATCATCTCATTCGATATGTTGACTGTTGGGGTTTAGTTTGCAGTGAGGTAATGGAATCGTCCCGAATATGAGATCCTTGATGACGTCCCAGAGAAGTTCCGTGTTAACAGGCTCAGCTGAAAATAGAGATGGGACAGGATTGTGTATGGTAGTGCGTAATAAATCCTGACATAGAAATTTGAACTACCGCTCCTTCAGGTGTACACAAATATCTGCCCCTAAGTCGACTTTGAGCGAATGTATCTCTGTTCCTGTGAGAATTATCAGAAAGTGGCAAACTGGCAAAGTACTTTCGATGTTATTTTGAGCATTTTTTTCAGTTACCCACTTTTTGATAACTTTTCCAAGAATCAATATAAAATCGCTTAAGATAAATGGTTATTCTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCA</canonical>
            <polymorphic>TGACGTACATAGACATTATCCGAATATCCTGTATTGGGGTAAGAGAGATAATTCCTTCATCATCGGATCATCTCATTCGATATGTTGACTGTTGGGGTTTAGTTTGCAGTGAGGTAATGGAATCGTCCCGAATATGAGATCCTTGATGACGTCCCAGAGAAGTTCCGTGTTAACAGGCTCAGCTGAAAATAGAGATGGGACAGGATTGTGTATGGTAGTGCGTAATAAATCCTGACATAGAAATTTGAACTACCGCTCCTTCAGGTGTACACAAATATCTGCCCCTAAGTCGACTTTGAGCGAATGTATCTCTGTTCCTGTGAGAATTATCAGAAAGTGGCAAACTGGCAAAGTACTTTCGATGTTATTTTGAGCATTTTTTTCAGTTACCCACTTTTTGATAACTTTTCCAAGAATCAATATAAAATCGCTTAAGATAAATGGTTATTCTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAARAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTTATTCTGTGTTTAGGGTAT</pcr_primer_p1>
		<pcr_primer_p2>TAATACGGGTTTTACGGTATGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGGTTATTCTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTA</canonical_amplicon>
		<polymorphic_amplicon>TGGTTATTCTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAARAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26771</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>558697</contig_pos>
        <strand></strand>
        <context>GTATGCATTA[T/G]KGATGTACAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTA</left_flank>
        <right_flank>AGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGAGAGATAATTCCTTCATCATCGGATCATCTCATTCGATATGTTGACTGTTGGGGTTTAGTTTGCAGTGAGGTAATGGAATCGTCCCGAATATGAGATCCTTGATGACGTCCCAGAGAAGTTCCGTGTTAACAGGCTCAGCTGAAAATAGAGATGGGACAGGATTGTGTATGGTAGTGCGTAATAAATCCTGACATAGAAATTTGAACTACCGCTCCTTCAGGTGTACACAAATATCTGCCCCTAAGTCGACTTTGAGCGAATGTATCTCTGTTCCTGTGAGAATTATCAGAAAGTGGCAAACTGGCAAAGTACTTTCGATGTTATTTTGAGCATTTTTTTCAGTTACCCACTTTTTGATAACTTTTCCAAGAATCAATATAAAATCGCTTAAGATAAATGGTTATTCTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGG</canonical>
            <polymorphic>TAAGAGAGATAATTCCTTCATCATCGGATCATCTCATTCGATATGTTGACTGTTGGGGTTTAGTTTGCAGTGAGGTAATGGAATCGTCCCGAATATGAGATCCTTGATGACGTCCCAGAGAAGTTCCGTGTTAACAGGCTCAGCTGAAAATAGAGATGGGACAGGATTGTGTATGGTAGTGCGTAATAAATCCTGACATAGAAATTTGAACTACCGCTCCTTCAGGTGTACACAAATATCTGCCCCTAAGTCGACTTTGAGCGAATGTATCTCTGTTCCTGTGAGAATTATCAGAAAGTGGCAAACTGGCAAAGTACTTTCGATGTTATTTTGAGCATTTTTTTCAGTTACCCACTTTTTGATAACTTTTCCAAGAATCAATATAAAATCGCTTAAGATAAATGGTTATTCTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTAKAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTTATTCTGTGTTTAGGGTAT</pcr_primer_p1>
		<pcr_primer_p2>TAATACGGGTTTTACGGTATGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGGTTATTCTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTA</canonical_amplicon>
		<polymorphic_amplicon>TGGTTATTCTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTAKAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26772</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>558698</contig_pos>
        <strand>+</strand>
        <context>TATGCATTAK[G/T]GATGTACAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTAT</left_flank>
        <right_flank>GATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAGAGATAATTCCTTCATCATCGGATCATCTCATTCGATATGTTGACTGTTGGGGTTTAGTTTGCAGTGAGGTAATGGAATCGTCCCGAATATGAGATCCTTGATGACGTCCCAGAGAAGTTCCGTGTTAACAGGCTCAGCTGAAAATAGAGATGGGACAGGATTGTGTATGGTAGTGCGTAATAAATCCTGACATAGAAATTTGAACTACCGCTCCTTCAGGTGTACACAAATATCTGCCCCTAAGTCGACTTTGAGCGAATGTATCTCTGTTCCTGTGAGAATTATCAGAAAGTGGCAAACTGGCAAAGTACTTTCGATGTTATTTTGAGCATTTTTTTCAGTTACCCACTTTTTGATAACTTTTCCAAGAATCAATATAAAATCGCTTAAGATAAATGGTTATTCTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGT</canonical>
            <polymorphic>AAGAGAGATAATTCCTTCATCATCGGATCATCTCATTCGATATGTTGACTGTTGGGGTTTAGTTTGCAGTGAGGTAATGGAATCGTCCCGAATATGAGATCCTTGATGACGTCCCAGAGAAGTTCCGTGTTAACAGGCTCAGCTGAAAATAGAGATGGGACAGGATTGTGTATGGTAGTGCGTAATAAATCCTGACATAGAAATTTGAACTACCGCTCCTTCAGGTGTACACAAATATCTGCCCCTAAGTCGACTTTGAGCGAATGTATCTCTGTTCCTGTGAGAATTATCAGAAAGTGGCAAACTGGCAAAGTACTTTCGATGTTATTTTGAGCATTTTTTTCAGTTACCCACTTTTTGATAACTTTTCCAAGAATCAATATAAAATCGCTTAAGATAAATGGTTATTCTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATKGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTTATTCTGTGTTTAGGGTAT</pcr_primer_p1>
		<pcr_primer_p2>TAATACGGGTTTTACGGTATGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGGTTATTCTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTA</canonical_amplicon>
		<polymorphic_amplicon>TGGTTATTCTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATKGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26773</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>558721</contig_pos>
        <strand>+</strand>
        <context>TTAGTATTGT[C/G]GGTATTGGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGT</left_flank>
        <right_flank>GGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGATCATCTCATTCGATATGTTGACTGTTGGGGTTTAGTTTGCAGTGAGGTAATGGAATCGTCCCGAATATGAGATCCTTGATGACGTCCCAGAGAAGTTCCGTGTTAACAGGCTCAGCTGAAAATAGAGATGGGACAGGATTGTGTATGGTAGTGCGTAATAAATCCTGACATAGAAATTTGAACTACCGCTCCTTCAGGTGTACACAAATATCTGCCCCTAAGTCGACTTTGAGCGAATGTATCTCTGTTCCTGTGAGAATTATCAGAAAGTGGCAAACTGGCAAAGTACTTTCGATGTTATTTTGAGCATTTTTTTCAGTTACCCACTTTTTGATAACTTTTCCAAGAATCAATATAAAATCGCTTAAGATAAATGGTTATTCTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCC</canonical>
            <polymorphic>CGGATCATCTCATTCGATATGTTGACTGTTGGGGTTTAGTTTGCAGTGAGGTAATGGAATCGTCCCGAATATGAGATCCTTGATGACGTCCCAGAGAAGTTCCGTGTTAACAGGCTCAGCTGAAAATAGAGATGGGACAGGATTGTGTATGGTAGTGCGTAATAAATCCTGACATAGAAATTTGAACTACCGCTCCTTCAGGTGTACACAAATATCTGCCCCTAAGTCGACTTTGAGCGAATGTATCTCTGTTCCTGTGAGAATTATCAGAAAGTGGCAAACTGGCAAAGTACTTTCGATGTTATTTTGAGCATTTTTTTCAGTTACCCACTTTTTGATAACTTTTCCAAGAATCAATATAAAATCGCTTAAGATAAATGGTTATTCTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTSGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>128 109 86 82 61 60 58 54 51 48 47 41 41 28 23 22 18 17 12 10 4</canonical_bands>
                <polymorphic_bands>132 128 86 82 61 60 58 54 51 48 47 41 41 28 22 18 17 12 10 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGTTATTCTGTGTTTAGGGTAT</pcr_primer_p1>
		<pcr_primer_p2>TAATACGGGTTTTACGGTATGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGGTTATTCTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTA</canonical_amplicon>
		<polymorphic_amplicon>TGGTTATTCTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTSGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26774</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>558737</contig_pos>
        <strand>+</strand>
        <context>TGGTCCGCTT[G/T]GGCCGCACAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTT</left_flank>
        <right_flank>GGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATGTTGACTGTTGGGGTTTAGTTTGCAGTGAGGTAATGGAATCGTCCCGAATATGAGATCCTTGATGACGTCCCAGAGAAGTTCCGTGTTAACAGGCTCAGCTGAAAATAGAGATGGGACAGGATTGTGTATGGTAGTGCGTAATAAATCCTGACATAGAAATTTGAACTACCGCTCCTTCAGGTGTACACAAATATCTGCCCCTAAGTCGACTTTGAGCGAATGTATCTCTGTTCCTGTGAGAATTATCAGAAAGTGGCAAACTGGCAAAGTACTTTCGATGTTATTTTGAGCATTTTTTTCAGTTACCCACTTTTTGATAACTTTTCCAAGAATCAATATAAAATCGCTTAAGATAAATGGTTATTCTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATCGGAGGGCCTT</canonical>
            <polymorphic>ATATGTTGACTGTTGGGGTTTAGTTTGCAGTGAGGTAATGGAATCGTCCCGAATATGAGATCCTTGATGACGTCCCAGAGAAGTTCCGTGTTAACAGGCTCAGCTGAAAATAGAGATGGGACAGGATTGTGTATGGTAGTGCGTAATAAATCCTGACATAGAAATTTGAACTACCGCTCCTTCAGGTGTACACAAATATCTGCCCCTAAGTCGACTTTGAGCGAATGTATCTCTGTTCCTGTGAGAATTATCAGAAAGTGGCAAACTGGCAAAGTACTTTCGATGTTATTTTGAGCATTTTTTTCAGTTACCCACTTTTTGATAACTTTTCCAAGAATCAATATAAAATCGCTTAAGATAAATGGTTATTCTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTKGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATCGGAGGGCCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>494 244 60 55 36 32 31 17 14 9 5 3</canonical_bands>
                <polymorphic_bands>494 244 69 55 36 32 31 17 14 5 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGTTATTCTGTGTTTAGGGTAT</pcr_primer_p1>
		<pcr_primer_p2>TAATACGGGTTTTACGGTATGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGGTTATTCTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTA</canonical_amplicon>
		<polymorphic_amplicon>TGGTTATTCTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTKGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26775</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>558849</contig_pos>
        <strand>+</strand>
        <context>ACCCGTATTA[A/G]AAGGGCCGGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTA</left_flank>
        <right_flank>AAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTAT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGATGGGACAGGATTGTGTATGGTAGTGCGTAATAAATCCTGACATAGAAATTTGAACTACCGCTCCTTCAGGTGTACACAAATATCTGCCCCTAAGTCGACTTTGAGCGAATGTATCTCTGTTCCTGTGAGAATTATCAGAAAGTGGCAAACTGGCAAAGTACTTTCGATGTTATTTTGAGCATTTTTTTCAGTTACCCACTTTTTGATAACTTTTCCAAGAATCAATATAAAATCGCTTAAGATAAATGGTTATTCTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATCGGAGGGCCTTTCTATTAGAGGGGCCTTCTATTAAAGGGGCCCTTCTTATACAGGTTTTACGGTATATGAACGAAACTATTAAAAATTATTTTTACATTTCACCCACCTTTAATTCAGAAGTT</canonical>
            <polymorphic>GAGATGGGACAGGATTGTGTATGGTAGTGCGTAATAAATCCTGACATAGAAATTTGAACTACCGCTCCTTCAGGTGTACACAAATATCTGCCCCTAAGTCGACTTTGAGCGAATGTATCTCTGTTCCTGTGAGAATTATCAGAAAGTGGCAAACTGGCAAAGTACTTTCGATGTTATTTTGAGCATTTTTTTCAGTTACCCACTTTTTGATAACTTTTCCAAGAATCAATATAAAATCGCTTAAGATAAATGGTTATTCTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTARAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATCGGAGGGCCTTTCTATTAGAGGGGCCTTCTATTAAAGGGGCCCTTCTTATACAGGTTTTACGGTATATGAACGAAACTATTAAAAATTATTTTTACATTTCACCCACCTTTAATTCAGAAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGGAGTTACGGTATGC</pcr_primer_p1>
		<pcr_primer_p2>ATAGAAGGGCCCCAATAATA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTAT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTARAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26776</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>558887</contig_pos>
        <strand>+</strand>
        <context>GTACTTCCGG[C/T]GGGCCCCTYT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGG</left_flank>
        <right_flank>GGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTGACATAGAAATTTGAACTACCGCTCCTTCAGGTGTACACAAATATCTGCCCCTAAGTCGACTTTGAGCGAATGTATCTCTGTTCCTGTGAGAATTATCAGAAAGTGGCAAACTGGCAAAGTACTTTCGATGTTATTTTGAGCATTTTTTTCAGTTACCCACTTTTTGATAACTTTTCCAAGAATCAATATAAAATCGCTTAAGATAAATGGTTATTCTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATCGGAGGGCCTTTCTATTAGAGGGGCCTTCTATTAAAGGGGCCCTTCTTATACAGGTTTTACGGTATATGAACGAAACTATTAAAAATTATTTTTACATTTCACCCACCTTTAATTCAGAAGTTCCGGTTCTCCATTTCCGAACGCTTGATTTCCCTTTATC</canonical>
            <polymorphic>TCCTGACATAGAAATTTGAACTACCGCTCCTTCAGGTGTACACAAATATCTGCCCCTAAGTCGACTTTGAGCGAATGTATCTCTGTTCCTGTGAGAATTATCAGAAAGTGGCAAACTGGCAAAGTACTTTCGATGTTATTTTGAGCATTTTTTTCAGTTACCCACTTTTTGATAACTTTTCCAAGAATCAATATAAAATCGCTTAAGATAAATGGTTATTCTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGYGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATCGGAGGGCCTTTCTATTAGAGGGGCCTTCTATTAAAGGGGCCCTTCTTATACAGGTTTTACGGTATATGAACGAAACTATTAAAAATTATTTTTACATTTCACCCACCTTTAATTCAGAAGTTCCGGTTCTCCATTTCCGAACGCTTGATTTCCCTTTATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>495 467 38</canonical_bands>
                <polymorphic_bands>962 38</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>129 128 109 86 82 61 60 55 54 51 41 38 28 23 18 17 12 4 4</canonical_bands>
                <polymorphic_bands>214 129 109 82 61 60 55 54 51 41 38 28 23 18 17 12 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACATACCGTAAAACCCGTAT</pcr_primer_p1>
		<pcr_primer_p2>ATATTGGCTTGGAAAAATAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>402</pcr_amplicon_size>
		<canonical_amplicon>TTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATAT</canonical_amplicon>
		<polymorphic_amplicon>TTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGYGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26777</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>558896</contig_pos>
        <strand>+</strand>
        <context>GYGGGCCCCT[C/T]TATTATTGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCT</left_flank>
        <right_flank>TATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAATTTGAACTACCGCTCCTTCAGGTGTACACAAATATCTGCCCCTAAGTCGACTTTGAGCGAATGTATCTCTGTTCCTGTGAGAATTATCAGAAAGTGGCAAACTGGCAAAGTACTTTCGATGTTATTTTGAGCATTTTTTTCAGTTACCCACTTTTTGATAACTTTTCCAAGAATCAATATAAAATCGCTTAAGATAAATGGTTATTCTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATCGGAGGGCCTTTCTATTAGAGGGGCCTTCTATTAAAGGGGCCCTTCTTATACAGGTTTTACGGTATATGAACGAAACTATTAAAAATTATTTTTACATTTCACCCACCTTTAATTCAGAAGTTCCGGTTCTCCATTTCCGAACGCTTGATTTCCCTTTATCCAGAATTTA</canonical>
            <polymorphic>AGAAATTTGAACTACCGCTCCTTCAGGTGTACACAAATATCTGCCCCTAAGTCGACTTTGAGCGAATGTATCTCTGTTCCTGTGAGAATTATCAGAAAGTGGCAAACTGGCAAAGTACTTTCGATGTTATTTTGAGCATTTTTTTCAGTTACCCACTTTTTGATAACTTTTCCAAGAATCAATATAAAATCGCTTAAGATAAATGGTTATTCTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTYTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATCGGAGGGCCTTTCTATTAGAGGGGCCTTCTATTAAAGGGGCCCTTCTTATACAGGTTTTACGGTATATGAACGAAACTATTAAAAATTATTTTTACATTTCACCCACCTTTAATTCAGAAGTTCCGGTTCTCCATTTCCGAACGCTTGATTTCCCTTTATCCAGAATTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACATACCGTAAAACCCGTAT</pcr_primer_p1>
		<pcr_primer_p2>ATATTGGCTTGGAAAAATAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>402</pcr_amplicon_size>
		<canonical_amplicon>TTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATAT</canonical_amplicon>
		<polymorphic_amplicon>TTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTYTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26778</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>558962</contig_pos>
        <strand></strand>
        <context>cgaaattttg[T/C]atcaaaaaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTG</left_flank>
        <right_flank>ATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTATCTCTGTTCCTGTGAGAATTATCAGAAAGTGGCAAACTGGCAAAGTACTTTCGATGTTATTTTGAGCATTTTTTTCAGTTACCCACTTTTTGATAACTTTTCCAAGAATCAATATAAAATCGCTTAAGATAAATGGTTATTCTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATCGGAGGGCCTTTCTATTAGAGGGGCCTTCTATTAAAGGGGCCCTTCTTATACAGGTTTTACGGTATATGAACGAAACTATTAAAAATTATTTTTACATTTCACCCACCTTTAATTCAGAAGTTCCGGTTCTCCATTTCCGAACGCTTGATTTCCCTTTATCCAGAATTTAATAATTCTTTATTGTTCATTGTTTTTTTCTCTACCCAACAAATGGTGTGTTATTCTGACCATTCTC</canonical>
            <polymorphic>TGTATCTCTGTTCCTGTGAGAATTATCAGAAAGTGGCAAACTGGCAAAGTACTTTCGATGTTATTTTGAGCATTTTTTTCAGTTACCCACTTTTTGATAACTTTTCCAAGAATCAATATAAAATCGCTTAAGATAAATGGTTATTCTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGYATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATCGGAGGGCCTTTCTATTAGAGGGGCCTTCTATTAAAGGGGCCCTTCTTATACAGGTTTTACGGTATATGAACGAAACTATTAAAAATTATTTTTACATTTCACCCACCTTTAATTCAGAAGTTCCGGTTCTCCATTTCCGAACGCTTGATTTCCCTTTATCCAGAATTTAATAATTCTTTATTGTTCATTGTTTTTTTCTCTACCCAACAAATGGTGTGTTATTCTGACCATTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTATTGGGGCCCTTCTAT</pcr_primer_p1>
		<pcr_primer_p2>GATATTGGCTTGGAAAAATAAA</pcr_primer_p2>
		<pcr_amplicon_size>331</pcr_amplicon_size>
		<canonical_amplicon>TATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATC</canonical_amplicon>
		<polymorphic_amplicon>TATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGYATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26779</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>559028</contig_pos>
        <strand></strand>
        <context>caaaatttag[C/A]aagattttca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAG</left_flank>
        <right_flank>AAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGCATTTTTTTCAGTTACCCACTTTTTGATAACTTTTCCAAGAATCAATATAAAATCGCTTAAGATAAATGGTTATTCTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATCGGAGGGCCTTTCTATTAGAGGGGCCTTCTATTAAAGGGGCCCTTCTTATACAGGTTTTACGGTATATGAACGAAACTATTAAAAATTATTTTTACATTTCACCCACCTTTAATTCAGAAGTTCCGGTTCTCCATTTCCGAACGCTTGATTTCCCTTTATCCAGAATTTAATAATTCTTTATTGTTCATTGTTTTTTTCTCTACCCAACAAATGGTGTGTTATTCTGACCATTCTCACCTGCCACAATTGAGTCATTTTTGGTTTAAATCAAAAAAATTTTCCCACAAAGTTCCAAGCCAAA</canonical>
            <polymorphic>TGAGCATTTTTTTCAGTTACCCACTTTTTGATAACTTTTCCAAGAATCAATATAAAATCGCTTAAGATAAATGGTTATTCTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGMAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATCGGAGGGCCTTTCTATTAGAGGGGCCTTCTATTAAAGGGGCCCTTCTTATACAGGTTTTACGGTATATGAACGAAACTATTAAAAATTATTTTTACATTTCACCCACCTTTAATTCAGAAGTTCCGGTTCTCCATTTCCGAACGCTTGATTTCCCTTTATCCAGAATTTAATAATTCTTTATTGTTCATTGTTTTTTTCTCTACCCAACAAATGGTGTGTTATTCTGACCATTCTCACCTGCCACAATTGAGTCATTTTTGGTTTAAATCAAAAAAATTTTCCCACAAAGTTCCAAGCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTATTGGGGCCCTTCTAT</pcr_primer_p1>
		<pcr_primer_p2>GATATTGGCTTGGAAAAATAAA</pcr_primer_p2>
		<pcr_amplicon_size>331</pcr_amplicon_size>
		<canonical_amplicon>TATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATC</canonical_amplicon>
		<polymorphic_amplicon>TATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGMAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26780</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>559098</contig_pos>
        <strand>+</strand>
        <context>aatattttcc[A/G]ctgaaaaart</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCC</left_flank>
        <right_flank>CTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGTTATTCTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATCGGAGGGCCTTTCTATTAGAGGGGCCTTCTATTAAAGGGGCCCTTCTTATACAGGTTTTACGGTATATGAACGAAACTATTAAAAATTATTTTTACATTTCACCCACCTTTAATTCAGAAGTTCCGGTTCTCCATTTCCGAACGCTTGATTTCCCTTTATCCAGAATTTAATAATTCTTTATTGTTCATTGTTTTTTTCTCTACCCAACAAATGGTGTGTTATTCTGACCATTCTCACCTGCCACAATTGAGTCATTTTTGGTTTAAATCAAAAAAATTTTCCCACAAAGTTCCAAGCCAAATGACCACTAACAACTCCACTTCAATGTCAATTTGGAATGAGAATCCAACTTTTTATTTTATCTTCAAACG</canonical>
            <polymorphic>ATGGTTATTCTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCRCTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATCGGAGGGCCTTTCTATTAGAGGGGCCTTCTATTAAAGGGGCCCTTCTTATACAGGTTTTACGGTATATGAACGAAACTATTAAAAATTATTTTTACATTTCACCCACCTTTAATTCAGAAGTTCCGGTTCTCCATTTCCGAACGCTTGATTTCCCTTTATCCAGAATTTAATAATTCTTTATTGTTCATTGTTTTTTTCTCTACCCAACAAATGGTGTGTTATTCTGACCATTCTCACCTGCCACAATTGAGTCATTTTTGGTTTAAATCAAAAAAATTTTCCCACAAAGTTCCAAGCCAAATGACCACTAACAACTCCACTTCAATGTCAATTTGGAATGAGAATCCAACTTTTTATTTTATCTTCAAACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>129 128 111 109 86 82 60 52 41 41 28 23 23 18 18 14 12 12 7 4 2</canonical_bands>
                <polymorphic_bands>142 129 128 111 109 86 52 41 41 28 23 23 18 18 14 12 12 7 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTATTGGGGCCCTTCTAT</pcr_primer_p1>
		<pcr_primer_p2>GATATTGGCTTGGAAAAATAAA</pcr_primer_p2>
		<pcr_amplicon_size>331</pcr_amplicon_size>
		<canonical_amplicon>TATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATC</canonical_amplicon>
		<polymorphic_amplicon>TATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCRCTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26781</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>559107</contig_pos>
        <strand></strand>
        <context>crctgaaaaa[G/A]tacggaaatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAA</left_flank>
        <right_flank>TACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTC</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATCGGAGGGCCTTTCTATTAGAGGGGCCTTCTATTAAAGGGGCCCTTCTTATACAGGTTTTACGGTATATGAACGAAACTATTAAAAATTATTTTTACATTTCACCCACCTTTAATTCAGAAGTTCCGGTTCTCCATTTCCGAACGCTTGATTTCCCTTTATCCAGAATTTAATAATTCTTTATTGTTCATTGTTTTTTTCTCTACCCAACAAATGGTGTGTTATTCTGACCATTCTCACCTGCCACAATTGAGTCATTTTTGGTTTAAATCAAAAAAATTTTCCCACAAAGTTCCAAGCCAAATGACCACTAACAACTCCACTTCAATGTCAATTTGGAATGAGAATCCAACTTTTTATTTTATCTTCAAACGCGCTTATTC</canonical>
            <polymorphic>CTGTGTTTAGGGTATGGGGAATTTTCGTTCGTATGAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAARTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATCGGAGGGCCTTTCTATTAGAGGGGCCTTCTATTAAAGGGGCCCTTCTTATACAGGTTTTACGGTATATGAACGAAACTATTAAAAATTATTTTTACATTTCACCCACCTTTAATTCAGAAGTTCCGGTTCTCCATTTCCGAACGCTTGATTTCCCTTTATCCAGAATTTAATAATTCTTTATTGTTCATTGTTTTTTTCTCTACCCAACAAATGGTGTGTTATTCTGACCATTCTCACCTGCCACAATTGAGTCATTTTTGGTTTAAATCAAAAAAATTTTCCCACAAAGTTCCAAGCCAAATGACCACTAACAACTCCACTTCAATGTCAATTTGGAATGAGAATCCAACTTTTTATTTTATCTTCAAACGCGCTTATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 230 175 96</canonical_bands>
                <polymorphic_bands>729 175 96</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTATTGGGGCCCTTCTAT</pcr_primer_p1>
		<pcr_primer_p2>GATATTGGCTTGGAAAAATAAA</pcr_primer_p2>
		<pcr_amplicon_size>331</pcr_amplicon_size>
		<canonical_amplicon>TATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATC</canonical_amplicon>
		<polymorphic_amplicon>TATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAARTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26782</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>559141</contig_pos>
        <strand></strand>
        <context>CCAAACTTTT[G/A]AAGAGGGTYC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTT</left_flank>
        <right_flank>AAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTAT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATCGGAGGGCCTTTCTATTAGAGGGGCCTTCTATTAAAGGGGCCCTTCTTATACAGGTTTTACGGTATATGAACGAAACTATTAAAAATTATTTTTACATTTCACCCACCTTTAATTCAGAAGTTCCGGTTCTCCATTTCCGAACGCTTGATTTCCCTTTATCCAGAATTTAATAATTCTTTATTGTTCATTGTTTTTTTCTCTACCCAACAAATGGTGTGTTATTCTGACCATTCTCACCTGCCACAATTGAGTCATTTTTGGTTTAAATCAAAAAAATTTTCCCACAAAGTTCCAAGCCAAATGACCACTAACAACTCCACTTCAATGTCAATTTGGAATGAGAATCCAACTTTTTATTTTATCTTCAAACGCGCTTATTCTATCCTGGCCACAGTTTTATATCCATTGGCACAT</canonical>
            <polymorphic>GAAAGTATTAAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTRAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATCGGAGGGCCTTTCTATTAGAGGGGCCTTCTATTAAAGGGGCCCTTCTTATACAGGTTTTACGGTATATGAACGAAACTATTAAAAATTATTTTTACATTTCACCCACCTTTAATTCAGAAGTTCCGGTTCTCCATTTCCGAACGCTTGATTTCCCTTTATCCAGAATTTAATAATTCTTTATTGTTCATTGTTTTTTTCTCTACCCAACAAATGGTGTGTTATTCTGACCATTCTCACCTGCCACAATTGAGTCATTTTTGGTTTAAATCAAAAAAATTTTCCCACAAAGTTCCAAGCCAAATGACCACTAACAACTCCACTTCAATGTCAATTTGGAATGAGAATCCAACTTTTTATTTTATCTTCAAACGCGCTTATTCTATCCTGGCCACAGTTTTATATCCATTGGCACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTATTGGGGCCCTTCTAT</pcr_primer_p1>
		<pcr_primer_p2>GATATTGGCTTGGAAAAATAAA</pcr_primer_p2>
		<pcr_amplicon_size>331</pcr_amplicon_size>
		<canonical_amplicon>TATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATC</canonical_amplicon>
		<polymorphic_amplicon>TATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTRAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26783</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>559150</contig_pos>
        <strand>+</strand>
        <context>TRAAGAGGGT[C/T]CTTTTTCACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGT</left_flank>
        <right_flank>CTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATCGGAGGGCCTTTCTATTAGAGGGGCCTTCTATTAAAGGGGCCCTTCTTATACAGGTTTTACGGTATATGAACGAAACTATTAAAAATTATTTTTACATTTCACCCACCTTTAATTCAGAAGTTCCGGTTCTCCATTTCCGAACGCTTGATTTCCCTTTATCCAGAATTTAATAATTCTTTATTGTTCATTGTTTTTTTCTCTACCCAACAAATGGTGTGTTATTCTGACCATTCTCACCTGCCACAATTGAGTCATTTTTGGTTTAAATCAAAAAAATTTTCCCACAAAGTTCCAAGCCAAATGACCACTAACAACTCCACTTCAATGTCAATTTGGAATGAGAATCCAACTTTTTATTTTATCTTCAAACGCGCTTATTCTATCCTGGCCACAGTTTTATATCCATTGGCACATTATTGTGTA</canonical>
            <polymorphic>AAAAAAAAAGGAGACATGAGTTTTTTTGGAGTTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTYCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATCGGAGGGCCTTTCTATTAGAGGGGCCTTCTATTAAAGGGGCCCTTCTTATACAGGTTTTACGGTATATGAACGAAACTATTAAAAATTATTTTTACATTTCACCCACCTTTAATTCAGAAGTTCCGGTTCTCCATTTCCGAACGCTTGATTTCCCTTTATCCAGAATTTAATAATTCTTTATTGTTCATTGTTTTTTTCTCTACCCAACAAATGGTGTGTTATTCTGACCATTCTCACCTGCCACAATTGAGTCATTTTTGGTTTAAATCAAAAAAATTTTCCCACAAAGTTCCAAGCCAAATGACCACTAACAACTCCACTTCAATGTCAATTTGGAATGAGAATCCAACTTTTTATTTTATCTTCAAACGCGCTTATTCTATCCTGGCCACAGTTTTATATCCATTGGCACATTATTGTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTATTGGGGCCCTTCTAT</pcr_primer_p1>
		<pcr_primer_p2>GATATTGGCTTGGAAAAATAAA</pcr_primer_p2>
		<pcr_amplicon_size>331</pcr_amplicon_size>
		<canonical_amplicon>TATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATC</canonical_amplicon>
		<polymorphic_amplicon>TATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTYCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26784</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>559181</contig_pos>
        <strand>+</strand>
        <context>CTATTACGGG[G/T]GCSCTTTTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGG</left_flank>
        <right_flank>GCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATCGGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATCGGAGGGCCTTTCTATTAGAGGGGCCTTCTATTAAAGGGGCCCTTCTTATACAGGTTTTACGGTATATGAACGAAACTATTAAAAATTATTTTTACATTTCACCCACCTTTAATTCAGAAGTTCCGGTTCTCCATTTCCGAACGCTTGATTTCCCTTTATCCAGAATTTAATAATTCTTTATTGTTCATTGTTTTTTTCTCTACCCAACAAATGGTGTGTTATTCTGACCATTCTCACCTGCCACAATTGAGTCATTTTTGGTTTAAATCAAAAAAATTTTCCCACAAAGTTCCAAGCCAAATGACCACTAACAACTCCACTTCAATGTCAATTTGGAATGAGAATCCAACTTTTTATTTTATCTTCAAACGCGCTTATTCTATCCTGGCCACAGTTTTATATCCATTGGCACATTATTGTGTACTGAAAAAGTCTCCGAAAAATTTTGAGTCAT</canonical>
            <polymorphic>TTACGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGKGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATCGGAGGGCCTTTCTATTAGAGGGGCCTTCTATTAAAGGGGCCCTTCTTATACAGGTTTTACGGTATATGAACGAAACTATTAAAAATTATTTTTACATTTCACCCACCTTTAATTCAGAAGTTCCGGTTCTCCATTTCCGAACGCTTGATTTCCCTTTATCCAGAATTTAATAATTCTTTATTGTTCATTGTTTTTTTCTCTACCCAACAAATGGTGTGTTATTCTGACCATTCTCACCTGCCACAATTGAGTCATTTTTGGTTTAAATCAAAAAAATTTTCCCACAAAGTTCCAAGCCAAATGACCACTAACAACTCCACTTCAATGTCAATTTGGAATGAGAATCCAACTTTTTATTTTATCTTCAAACGCGCTTATTCTATCCTGGCCACAGTTTTATATCCATTGGCACATTATTGTGTACTGAAAAAGTCTCCGAAAAATTTTGAGTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTCTATTGTTCCAAGGTACT</pcr_primer_p1>
		<pcr_primer_p2>GAAGGCCCCTCTAATAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>396</pcr_amplicon_size>
		<canonical_amplicon>CCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATCGGAGGGCCTTTCTATTAGAGGGGCCTTC</canonical_amplicon>
		<polymorphic_amplicon>CCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGKGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATCGGAGGGCCTTTCTATTAGAGGGGCCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26785</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>559184</contig_pos>
        <strand>+</strand>
        <context>TTACGGGKGC[C/G]CTTTTATTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGC</left_flank>
        <right_flank>CTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATCGGAGGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATCGGAGGGCCTTTCTATTAGAGGGGCCTTCTATTAAAGGGGCCCTTCTTATACAGGTTTTACGGTATATGAACGAAACTATTAAAAATTATTTTTACATTTCACCCACCTTTAATTCAGAAGTTCCGGTTCTCCATTTCCGAACGCTTGATTTCCCTTTATCCAGAATTTAATAATTCTTTATTGTTCATTGTTTTTTTCTCTACCCAACAAATGGTGTGTTATTCTGACCATTCTCACCTGCCACAATTGAGTCATTTTTGGTTTAAATCAAAAAAATTTTCCCACAAAGTTCCAAGCCAAATGACCACTAACAACTCCACTTCAATGTCAATTTGGAATGAGAATCCAACTTTTTATTTTATCTTCAAACGCGCTTATTCTATCCTGGCCACAGTTTTATATCCATTGGCACATTATTGTGTACTGAAAAAGTCTCCGAAAAATTTTGAGTCATTGA</canonical>
            <polymorphic>CGGTATGCATTATAGATGTACAGTCGTTAGTATTGTGGGTATTGGTCCGCTTGGGCCGCACAGCTTGCGCCACTGTAGCTCAGCCGGTAGCAACGCGCCACTTACAACGACAGGTCCACAATTAGAATTTCTCGAGGGGTTTACATACCGTAAAACCCGTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCSCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATCGGAGGGCCTTTCTATTAGAGGGGCCTTCTATTAAAGGGGCCCTTCTTATACAGGTTTTACGGTATATGAACGAAACTATTAAAAATTATTTTTACATTTCACCCACCTTTAATTCAGAAGTTCCGGTTCTCCATTTCCGAACGCTTGATTTCCCTTTATCCAGAATTTAATAATTCTTTATTGTTCATTGTTTTTTTCTCTACCCAACAAATGGTGTGTTATTCTGACCATTCTCACCTGCCACAATTGAGTCATTTTTGGTTTAAATCAAAAAAATTTTCCCACAAAGTTCCAAGCCAAATGACCACTAACAACTCCACTTCAATGTCAATTTGGAATGAGAATCCAACTTTTTATTTTATCTTCAAACGCGCTTATTCTATCCTGGCCACAGTTTTATATCCATTGGCACATTATTGTGTACTGAAAAAGTCTCCGAAAAATTTTGAGTCATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>416 403 84 69 28</canonical_bands>
                <polymorphic_bands>819 84 69 28</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTCTATTGTTCCAAGGTACT</pcr_primer_p1>
		<pcr_primer_p2>GAAGGCCCCTCTAATAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>396</pcr_amplicon_size>
		<canonical_amplicon>CCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCGCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATCGGAGGGCCTTTCTATTAGAGGGGCCTTC</canonical_amplicon>
		<polymorphic_amplicon>CCTTCTATTGTTCCAAGGTACTTCCGGTGGGCCCCTTTATTATTGGGGCCCTTCTATTGGGGCCCTTCTATTTTTCCGGCCAGTTTTTTTTTCGAAATTTTGTATCAAAAAATTCGACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAGTTTCTACTAAATTGTAGAGTTTCCAGAATATTTTCCACTGAAAAAGTACGGAAATTTTCTGATTTCAATCCAAACTTTTGAAGAGGGTTCTTTTTCACAGAGGGCCCTTCTATTACGGGGGCSCTTTTATTACAGGTGGGCCCTTTTATTTTTCCAAGCCAATATCGGAGGGCCTTTCTATTAGAGGGGCCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26786</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>568129</contig_pos>
        <strand>+</strand>
        <context>ATGGGACGTA[A/G]AAGGGTGGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCGATGGGACGTA</left_flank>
        <right_flank>AAGGGTGGATAGGACCGCGGTTGAAGGTATGGGACCACGGTTATCATGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACCTTAACCTTGTATTTTGTCAATTATTGTTTTCATGCGATGTCTTCCTTTGCTCATTATCTGATTTTCATTCATTTTCCAGAGTTCATTTTTAGCCTACAAAACTCAAAAGATTTTGTTTTTTTTTGTTTCCTGGTTCAATTTACATAAACTGTCCGTATTTTGTGATTTTTTGGTCAGCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTGTTTTTTGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCGATGGGACGTAAAAGGGTGGATAGGACCGCGGTTGAAGGTATGGGACCACGGTTATCATGTGGCAACCACTCTCATGATTGATGGAATCTTTTTGGAACCCCTCTTCCTAGATAGACCCATAGTTTCTTTACCTAAAAATAAGAATGCAAGTTAAACATTTTTATTATAAACAAAAAAATGCACAACAATTAAAATATTCTAGAAAATGATTAGAATGTTAGGCTTGTTGCATAGCTTCCAGTTCTTTAGCGATCCACCGTTTCTCAGATTCCTCGAGCTCTTGCGTCAGTTTCCGTTCCATAACTTGAGTCTGGCCAGCTTGGCGAAAGAAGAAAATGCAAGCGAAAAAACATAGCACTGGAATTCCAAACACGTAATGATAGAGGTTTAGGAATGGAGAGATAAAGAAGATGACACAAGATCCAAGGGACTGAAAATGTGGAATTTGGAATTTTTGAGATAGTAAGCCTACCTGATAGATTTTAGACACTGAAAACGCTTGAGCTCTGCG</canonical>
            <polymorphic>CTACCTTAACCTTGTATTTTGTCAATTATTGTTTTCATGCGATGTCTTCCTTTGCTCATTATCTGATTTTCATTCATTTTCCAGAGTTCATTTTTAGCCTACAAAACTCAAAAGATTTTGTTTTTTTTTGTTTCCTGGTTCAATTTACATAAACTGTCCGTATTTTGTGATTTTTTGGTCAGCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTGTTTTTTGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCGATGGGACGTARAAGGGTGGATAGGACCGCGGTTGAAGGTATGGGACCACGGTTATCATGTGGCAACCACTCTCATGATTGATGGAATCTTTTTGGAACCCCTCTTCCTAGATAGACCCATAGTTTCTTTACCTAAAAATAAGAATGCAAGTTAAACATTTTTATTATAAACAAAAAAATGCACAACAATTAAAATATTCTAGAAAATGATTAGAATGTTAGGCTTGTTGCATAGCTTCCAGTTCTTTAGCGATCCACCGTTTCTCAGATTCCTCGAGCTCTTGCGTCAGTTTCCGTTCCATAACTTGAGTCTGGCCAGCTTGGCGAAAGAAGAAAATGCAAGCGAAAAAACATAGCACTGGAATTCCAAACACGTAATGATAGAGGTTTAGGAATGGAGAGATAAAGAAGATGACACAAGATCCAAGGGACTGAAAATGTGGAATTTGGAATTTTTGAGATAGTAAGCCTACCTGATAGATTTTAGACACTGAAAACGCTTGAGCTCTGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCCTTCCTATCACGGTAGC</pcr_primer_p1>
		<pcr_primer_p2>GTCTATCTAGGAAGAGGGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCGATGGGACGTAAAAGGGTGGATAGGACCGCGGTTGAAGGTATGGGACCACGGTTATCATGTGGCAACCACTCTCATGATTGATGGAATCTTTTTGGAACCCCTCTTCCTAGATAGAC</canonical_amplicon>
		<polymorphic_amplicon>TATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCGATGGGACGTARAAGGGTGGATAGGACCGCGGTTGAAGGTATGGGACCACGGTTATCATGTGGCAACCACTCTCATGATTGATGGAATCTTTTTGGAACCCCTCTTCCTAGATAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26787</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>568145</contig_pos>
        <strand>+</strand>
        <context>TGGATAGGAM[A/C]GCGGTTGAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCTTCTAGATTTCTTATTTGGCGATGGGACGTAAAAGGGTGGATAGGAC</left_flank>
        <right_flank>GCGGTTGAAGGTATGGGACCACGGTTATCATGTGGCAACCACTCTCATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGTCAATTATTGTTTTCATGCGATGTCTTCCTTTGCTCATTATCTGATTTTCATTCATTTTCCAGAGTTCATTTTTAGCCTACAAAACTCAAAAGATTTTGTTTTTTTTTGTTTCCTGGTTCAATTTACATAAACTGTCCGTATTTTGTGATTTTTTGGTCAGCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTGTTTTTTGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCGATGGGACGTAAAAGGGTGGATAGGACCGCGGTTGAAGGTATGGGACCACGGTTATCATGTGGCAACCACTCTCATGATTGATGGAATCTTTTTGGAACCCCTCTTCCTAGATAGACCCATAGTTTCTTTACCTAAAAATAAGAATGCAAGTTAAACATTTTTATTATAAACAAAAAAATGCACAACAATTAAAATATTCTAGAAAATGATTAGAATGTTAGGCTTGTTGCATAGCTTCCAGTTCTTTAGCGATCCACCGTTTCTCAGATTCCTCGAGCTCTTGCGTCAGTTTCCGTTCCATAACTTGAGTCTGGCCAGCTTGGCGAAAGAAGAAAATGCAAGCGAAAAAACATAGCACTGGAATTCCAAACACGTAATGATAGAGGTTTAGGAATGGAGAGATAAAGAAGATGACACAAGATCCAAGGGACTGAAAATGTGGAATTTGGAATTTTTGAGATAGTAAGCCTACCTGATAGATTTTAGACACTGAAAACGCTTGAGCTCTGCGTTTGGGCATAGCCAGT</canonical>
            <polymorphic>TTTTGTCAATTATTGTTTTCATGCGATGTCTTCCTTTGCTCATTATCTGATTTTCATTCATTTTCCAGAGTTCATTTTTAGCCTACAAAACTCAAAAGATTTTGTTTTTTTTTGTTTCCTGGTTCAATTTACATAAACTGTCCGTATTTTGTGATTTTTTGGTCAGCACCTACTGAAACACGTGTTCAACGAAACAATTTATATGACTTGTTTTTTGAAAATCTAATTTTTAGAGCAAATAACTTATGGTCGTTTTAGGTCTAACGCAGGAGAGTGCTCCGAAAAAGGTTTCTCGGTCCCATTACCCCGACCATGACCCTATCAACTTTGAAATGGTCTTATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCGATGGGACGTAAAAGGGTGGATAGGACMGCGGTTGAAGGTATGGGACCACGGTTATCATGTGGCAACCACTCTCATGATTGATGGAATCTTTTTGGAACCCCTCTTCCTAGATAGACCCATAGTTTCTTTACCTAAAAATAAGAATGCAAGTTAAACATTTTTATTATAAACAAAAAAATGCACAACAATTAAAATATTCTAGAAAATGATTAGAATGTTAGGCTTGTTGCATAGCTTCCAGTTCTTTAGCGATCCACCGTTTCTCAGATTCCTCGAGCTCTTGCGTCAGTTTCCGTTCCATAACTTGAGTCTGGCCAGCTTGGCGAAAGAAGAAAATGCAAGCGAAAAAACATAGCACTGGAATTCCAAACACGTAATGATAGAGGTTTAGGAATGGAGAGATAAAGAAGATGACACAAGATCCAAGGGACTGAAAATGTGGAATTTGGAATTTTTGAGATAGTAAGCCTACCTGATAGATTTTAGACACTGAAAACGCTTGAGCTCTGCGTTTGGGCATAGCCAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>484 295 101 100 20</canonical_bands>
                <polymorphic_bands>484 295 121 100</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>484 295 101 100 20</canonical_bands>
                <polymorphic_bands>484 295 121 100</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>391 377 108 104 20</canonical_bands>
                <polymorphic_bands>391 377 128 104</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>481 391 108 20</canonical_bands>
                <polymorphic_bands>481 391 128</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGCGG</site>
                <isoschizomers>
                    <enzyme>Cfr42I</enzyme>
                    <enzyme>KspI</enzyme>
                    <enzyme>SacII</enzyme>
                    <enzyme>Sfr303I</enzyme>
                    <enzyme>SgrBI</enzyme>
                    <enzyme>SstII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCCTTCCTATCACGGTAGC</pcr_primer_p1>
		<pcr_primer_p2>GTCTATCTAGGAAGAGGGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCGATGGGACGTAAAAGGGTGGATAGGACCGCGGTTGAAGGTATGGGACCACGGTTATCATGTGGCAACCACTCTCATGATTGATGGAATCTTTTTGGAACCCCTCTTCCTAGATAGAC</canonical_amplicon>
		<polymorphic_amplicon>TATCCTTCCTATCACGGTAGCATTTTTTCTACCATGTCCCAACCCACTTGGCCACGGTCCAACTTTTCATTGTAGTCCGATCCCTTAAATGTTGTTTTAGAAATTTAAATTTCTTCTAGATTTCTTATTTGGCGATGGGACGTAAAAGGGTGGATAGGACMGCGGTTGAAGGTATGGGACCACGGTTATCATGTGGCAACCACTCTCATGATTGATGGAATCTTTTTGGAACCCCTCTTCCTAGATAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26788</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>575407</contig_pos>
        <strand></strand>
        <context>ACATTTTTAG[C/T]CACYAATATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGAGTAATCAGTTTAAATAAAAAGAGCTAGCCCGGGGAACATTTTTAG</left_flank>
        <right_flank>CACCAATATCTAAGAAAAATCGAGCGGACACTTGGGGTACTTCCCTTGTA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTACTTTCTCGATCTTTTAGAACCTAGAAGCTTCTAGAAGTCTCTTACTTTTTCTTACAATTATTTATATAATCAGACTGATTGAAAATCATTTCAGATTCCATACAAAAAATGATTTCCGCTCAACTATTCTTCTTGGTGCTTTTAATTGCATGCTTGCTCGCTTTTGCCAATGCCCAATGGGGATATGGATGTAAGACATTTTTCGAAAAAGGCAGATTTCTTATTTTTCAATTTAAGACCGCCCATATGGATACGGAGGTTATGGTGGATACGGAGGATGGGGACACCACCACCATCACCACGGAGGATGGGGACGTCCATGGGGATACAGACCATATGGATGGGGATGGGGAAAATAGACAATATCGACTTTGATGGAATTCAATTTATGTAATAATTTTGAAATAAATTCTTGTATAAATCCATAAAGTTTGTTATGAATTGATTTGAGTAATCAGTTTAAATAAAAAGAGCTAGCCCGGGGAACATTTTTAGCCACCAATATCTAAGAAAAATCGAGCGGACACTTGGGGTACTTCCCTTGTAAGTATTTTTGTAAAGTTTATCAGTATAACGCCATATATCGTACAGATGTTTTCCAGGCAACACCGTAAACACCATAAGATAATACATATATTTTTACCCTTCNNNNNNNNNNNNTTGGGCCGCGGGGGGTGAGCCCCCCGGGTGGGTGCGGGCGGATGAATCGCCCCCAAATGGAAACCCTACTGAAAATTCATTAAGTTCAACTTCCGAAGGTCGGTTCAATGTAAATTTTTGTAATTTTCTGCCTTTTTTTTGAAGTGTGTCATGAAAAGTAAAATTTATGGAAACAAAATTATATTCTTTCTATAGGTTTTCATGACCTATAGGCTGTTATAACATAAGCCTTATTTCTTAAAACACATGTACATTTTTTATGACCAAGAATACAATAAATCTTTAGATACAGGTCTCTGAATTATTATCAGTTTTATATAATGTTGAAAATTCTAT</canonical>
            <polymorphic>AGTACTTTCTCGATCTTTTAGAACCTAGAAGCTTCTAGAAGTCTCTTACTTTTTCTTACAATTATTTATATAATCAGACTGATTGAAAATCATTTCAGATTCCATACAAAAAATGATTTCCGCTCAACTATTCTTCTTGGTGCTTTTAATTGCATGCTTGCTCGCTTTTGCCAATGCCCAATGGGGATATGGATGTAAGACATTTTTCGAAAAAGGCAGATTTCTTATTTTTCAATTTAAGACCGCCCATATGGATACGGAGGTTATGGTGGATACGGAGGATGGGGACACCACCACCATCACCACGGAGGATGGGGACGTCCATGGGGATACAGACCATATGGATGGGGATGGGGAAAATAGACAATATCGACTTTGATGGAATTCAATTTATGTAATAATTTTGAAATAAATTCTTGTATAAATCCATAAAGTTTGTTATGAATTGATTTGAGTAATCAGTTTAAATAAAAAGAGCTAGCCCGGGGAACATTTTTAGYCACCAATATCTAAGAAAAATCGAGCGGACACTTGGGGTACTTCCCTTGTAAGTATTTTTGTAAAGTTTATCAGTATAACGCCATATATCGTACAGATGTTTTCCAGGCAACACCGTAAACACCATAAGATAATACATATATTTTTACCCTTCNNNNNNNNNNNNTTGGGCCGCGGGGGGTGAGCCCCCCGGGTGGGTGCGGGCGGATGAATCGCCCCCAAATGGAAACCCTACTGAAAATTCATTAAGTTCAACTTCCGAAGGTCGGTTCAATGTAAATTTTTGTAATTTTCTGCCTTTTTTTTGAAGTGTGTCATGAAAAGTAAAATTTATGGAAACAAAATTATATTCTTTCTATAGGTTTTCATGACCTATAGGCTGTTATAACATAAGCCTTATTTCTTAAAACACATGTACATTTTTTATGACCAAGAATACAATAAATCTTTAGATACAGGTCTCTGAATTATTATCAGTTTTATATAATGTTGAAAATTCTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>446 194 170 108 31 18 15 14 4</canonical_bands>
                <polymorphic_bands>446 194 188 108 31 15 14 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATGGGGAAAATAGACAATATC</pcr_primer_p1>
		<pcr_primer_p2>GTACGATATATGGCGTTATACTGA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GATGGGGAAAATAGACAATATCGACTTTGATGGAATTCAATTTATGTAATAATTTTGAAATAAATTCTTGTATAAATCCATAAAGTTTGTTATGAATTGATTTGAGTAATCAGTTTAAATAAAAAGAGCTAGCCCGGGGAACATTTTTAGCCACCAATATCTAAGAAAAATCGAGCGGACACTTGGGGTACTTCCCTTGTAAGTATTTTTGTAAAGTTTATCAGTATAACGCCATATATCGTAC</canonical_amplicon>
		<polymorphic_amplicon>GATGGGGAAAATAGACAATATCGACTTTGATGGAATTCAATTTATGTAATAATTTTGAAATAAATTCTTGTATAAATCCATAAAGTTTGTTATGAATTGATTTGAGTAATCAGTTTAAATAAAAAGAGCTAGCCCGGGGAACATTTTTAGYCACCAATATCTAAGAAAAATCGAGCGGACACTTGGGGTACTTCCCTTGTAAGTATTTTTGTAAAGTTTATCAGTATAACGCCATATATCGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26789</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>575411</contig_pos>
        <strand>+</strand>
        <context>TTTTAGYCAC[C/T]AATATCTAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTAATCAGTTTAAATAAAAAGAGCTAGCCCGGGGAACATTTTTAGCCAC</left_flank>
        <right_flank>AATATCTAAGAAAAATCGAGCGGACACTTGGGGTACTTCCCTTGTAAGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTCTCGATCTTTTAGAACCTAGAAGCTTCTAGAAGTCTCTTACTTTTTCTTACAATTATTTATATAATCAGACTGATTGAAAATCATTTCAGATTCCATACAAAAAATGATTTCCGCTCAACTATTCTTCTTGGTGCTTTTAATTGCATGCTTGCTCGCTTTTGCCAATGCCCAATGGGGATATGGATGTAAGACATTTTTCGAAAAAGGCAGATTTCTTATTTTTCAATTTAAGACCGCCCATATGGATACGGAGGTTATGGTGGATACGGAGGATGGGGACACCACCACCATCACCACGGAGGATGGGGACGTCCATGGGGATACAGACCATATGGATGGGGATGGGGAAAATAGACAATATCGACTTTGATGGAATTCAATTTATGTAATAATTTTGAAATAAATTCTTGTATAAATCCATAAAGTTTGTTATGAATTGATTTGAGTAATCAGTTTAAATAAAAAGAGCTAGCCCGGGGAACATTTTTAGCCACCAATATCTAAGAAAAATCGAGCGGACACTTGGGGTACTTCCCTTGTAAGTATTTTTGTAAAGTTTATCAGTATAACGCCATATATCGTACAGATGTTTTCCAGGCAACACCGTAAACACCATAAGATAATACATATATTTTTACCCTTCNNNNNNNNNNNNTTGGGCCGCGGGGGGTGAGCCCCCCGGGTGGGTGCGGGCGGATGAATCGCCCCCAAATGGAAACCCTACTGAAAATTCATTAAGTTCAACTTCCGAAGGTCGGTTCAATGTAAATTTTTGTAATTTTCTGCCTTTTTTTTGAAGTGTGTCATGAAAAGTAAAATTTATGGAAACAAAATTATATTCTTTCTATAGGTTTTCATGACCTATAGGCTGTTATAACATAAGCCTTATTTCTTAAAACACATGTACATTTTTTATGACCAAGAATACAATAAATCTTTAGATACAGGTCTCTGAATTATTATCAGTTTTATATAATGTTGAAAATTCTATTCGT</canonical>
            <polymorphic>CTTTCTCGATCTTTTAGAACCTAGAAGCTTCTAGAAGTCTCTTACTTTTTCTTACAATTATTTATATAATCAGACTGATTGAAAATCATTTCAGATTCCATACAAAAAATGATTTCCGCTCAACTATTCTTCTTGGTGCTTTTAATTGCATGCTTGCTCGCTTTTGCCAATGCCCAATGGGGATATGGATGTAAGACATTTTTCGAAAAAGGCAGATTTCTTATTTTTCAATTTAAGACCGCCCATATGGATACGGAGGTTATGGTGGATACGGAGGATGGGGACACCACCACCATCACCACGGAGGATGGGGACGTCCATGGGGATACAGACCATATGGATGGGGATGGGGAAAATAGACAATATCGACTTTGATGGAATTCAATTTATGTAATAATTTTGAAATAAATTCTTGTATAAATCCATAAAGTTTGTTATGAATTGATTTGAGTAATCAGTTTAAATAAAAAGAGCTAGCCCGGGGAACATTTTTAGCCACYAATATCTAAGAAAAATCGAGCGGACACTTGGGGTACTTCCCTTGTAAGTATTTTTGTAAAGTTTATCAGTATAACGCCATATATCGTACAGATGTTTTCCAGGCAACACCGTAAACACCATAAGATAATACATATATTTTTACCCTTCNNNNNNNNNNNNTTGGGCCGCGGGGGGTGAGCCCCCCGGGTGGGTGCGGGCGGATGAATCGCCCCCAAATGGAAACCCTACTGAAAATTCATTAAGTTCAACTTCCGAAGGTCGGTTCAATGTAAATTTTTGTAATTTTCTGCCTTTTTTTTGAAGTGTGTCATGAAAAGTAAAATTTATGGAAACAAAATTATATTCTTTCTATAGGTTTTCATGACCTATAGGCTGTTATAACATAAGCCTTATTTCTTAAAACACATGTACATTTTTTATGACCAAGAATACAATAAATCTTTAGATACAGGTCTCTGAATTATTATCAGTTTTATATAATGTTGAAAATTCTATTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGGGGAAAATAGACAATATC</pcr_primer_p1>
		<pcr_primer_p2>GTACGATATATGGCGTTATACTGA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GATGGGGAAAATAGACAATATCGACTTTGATGGAATTCAATTTATGTAATAATTTTGAAATAAATTCTTGTATAAATCCATAAAGTTTGTTATGAATTGATTTGAGTAATCAGTTTAAATAAAAAGAGCTAGCCCGGGGAACATTTTTAGCCACCAATATCTAAGAAAAATCGAGCGGACACTTGGGGTACTTCCCTTGTAAGTATTTTTGTAAAGTTTATCAGTATAACGCCATATATCGTAC</canonical_amplicon>
		<polymorphic_amplicon>GATGGGGAAAATAGACAATATCGACTTTGATGGAATTCAATTTATGTAATAATTTTGAAATAAATTCTTGTATAAATCCATAAAGTTTGTTATGAATTGATTTGAGTAATCAGTTTAAATAAAAAGAGCTAGCCCGGGGAACATTTTTAGCCACYAATATCTAAGAAAAATCGAGCGGACACTTGGGGTACTTCCCTTGTAAGTATTTTTGTAAAGTTTATCAGTATAACGCCATATATCGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26790</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>575468</contig_pos>
        <strand>+</strand>
        <context>AGTATTTTTG[G/T]AAAGTTTATC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAAGAAAAATCGAGCGGACACTTGGGGTACTTCCCTTGTAAGTATTTTTG</left_flank>
        <right_flank>AAAGTTTATCAGTATAACGCCATATATCGTACAGATGTTTTCCAGGCAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATTTATATAATCAGACTGATTGAAAATCATTTCAGATTCCATACAAAAAATGATTTCCGCTCAACTATTCTTCTTGGTGCTTTTAATTGCATGCTTGCTCGCTTTTGCCAATGCCCAATGGGGATATGGATGTAAGACATTTTTCGAAAAAGGCAGATTTCTTATTTTTCAATTTAAGACCGCCCATATGGATACGGAGGTTATGGTGGATACGGAGGATGGGGACACCACCACCATCACCACGGAGGATGGGGACGTCCATGGGGATACAGACCATATGGATGGGGATGGGGAAAATAGACAATATCGACTTTGATGGAATTCAATTTATGTAATAATTTTGAAATAAATTCTTGTATAAATCCATAAAGTTTGTTATGAATTGATTTGAGTAATCAGTTTAAATAAAAAGAGCTAGCCCGGGGAACATTTTTAGCCACCAATATCTAAGAAAAATCGAGCGGACACTTGGGGTACTTCCCTTGTAAGTATTTTTGTAAAGTTTATCAGTATAACGCCATATATCGTACAGATGTTTTCCAGGCAACACCGTAAACACCATAAGATAATACATATATTTTTACCCTTCNNNNNNNNNNNNTTGGGCCGCGGGGGGTGAGCCCCCCGGGTGGGTGCGGGCGGATGAATCGCCCCCAAATGGAAACCCTACTGAAAATTCATTAAGTTCAACTTCCGAAGGTCGGTTCAATGTAAATTTTTGTAATTTTCTGCCTTTTTTTTGAAGTGTGTCATGAAAAGTAAAATTTATGGAAACAAAATTATATTCTTTCTATAGGTTTTCATGACCTATAGGCTGTTATAACATAAGCCTTATTTCTTAAAACACATGTACATTTTTTATGACCAAGAATACAATAAATCTTTAGATACAGGTCTCTGAATTATTATCAGTTTTATATAATGTTGAAAATTCTATTCGTCTACTTTCCATGTGGTCCGTGGTTGTCAGATCCATGTGAGCTGAGAATGAATTGACC</canonical>
            <polymorphic>TTATTTATATAATCAGACTGATTGAAAATCATTTCAGATTCCATACAAAAAATGATTTCCGCTCAACTATTCTTCTTGGTGCTTTTAATTGCATGCTTGCTCGCTTTTGCCAATGCCCAATGGGGATATGGATGTAAGACATTTTTCGAAAAAGGCAGATTTCTTATTTTTCAATTTAAGACCGCCCATATGGATACGGAGGTTATGGTGGATACGGAGGATGGGGACACCACCACCATCACCACGGAGGATGGGGACGTCCATGGGGATACAGACCATATGGATGGGGATGGGGAAAATAGACAATATCGACTTTGATGGAATTCAATTTATGTAATAATTTTGAAATAAATTCTTGTATAAATCCATAAAGTTTGTTATGAATTGATTTGAGTAATCAGTTTAAATAAAAAGAGCTAGCCCGGGGAACATTTTTAGCCACCAATATCTAAGAAAAATCGAGCGGACACTTGGGGTACTTCCCTTGTAAGTATTTTTGKAAAGTTTATCAGTATAACGCCATATATCGTACAGATGTTTTCCAGGCAACACCGTAAACACCATAAGATAATACATATATTTTTACCCTTCNNNNNNNNNNNNTTGGGCCGCGGGGGGTGAGCCCCCCGGGTGGGTGCGGGCGGATGAATCGCCCCCAAATGGAAACCCTACTGAAAATTCATTAAGTTCAACTTCCGAAGGTCGGTTCAATGTAAATTTTTGTAATTTTCTGCCTTTTTTTTGAAGTGTGTCATGAAAAGTAAAATTTATGGAAACAAAATTATATTCTTTCTATAGGTTTTCATGACCTATAGGCTGTTATAACATAAGCCTTATTTCTTAAAACACATGTACATTTTTTATGACCAAGAATACAATAAATCTTTAGATACAGGTCTCTGAATTATTATCAGTTTTATATAATGTTGAAAATTCTATTCGTCTACTTTCCATGTGGTCCGTGGTTGTCAGATCCATGTGAGCTGAGAATGAATTGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTGATGGAATTCAATTTATGT</pcr_primer_p1>
		<pcr_primer_p2>TATCTTATGGTGTTTACGGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>CTTTGATGGAATTCAATTTATGTAATAATTTTGAAATAAATTCTTGTATAAATCCATAAAGTTTGTTATGAATTGATTTGAGTAATCAGTTTAAATAAAAAGAGCTAGCCCGGGGAACATTTTTAGCCACCAATATCTAAGAAAAATCGAGCGGACACTTGGGGTACTTCCCTTGTAAGTATTTTTGTAAAGTTTATCAGTATAACGCCATATATCGTACAGATGTTTTCCAGGCAACACCGTAAACACCATAAGATA</canonical_amplicon>
		<polymorphic_amplicon>CTTTGATGGAATTCAATTTATGTAATAATTTTGAAATAAATTCTTGTATAAATCCATAAAGTTTGTTATGAATTGATTTGAGTAATCAGTTTAAATAAAAAGAGCTAGCCCGGGGAACATTTTTAGCCACCAATATCTAAGAAAAATCGAGCGGACACTTGGGGTACTTCCCTTGTAAGTATTTTTGKAAAGTTTATCAGTATAACGCCATATATCGTACAGATGTTTTCCAGGCAACACCGTAAACACCATAAGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26791</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>579604</contig_pos>
        <strand>+</strand>
        <context>TTGTCAGGGT[A/G]CCCTGCGAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGCAAAACTTCCATCATCTTTCGACAAATGGCTGAACATTGTCAGGGT</left_flank>
        <right_flank>CCCTGCGAGTGACCCATATAGTACACACTCTCCTGTCCAGTCACTTCCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTCAACGGCGTTTTTTGGGGATTTCGGATTTTTTTCGAATTTTTTCGCAATAATATTCTGAAAATAGATAAATTTTAACACATTTTGATGCAATAAAAAATTGACCGGAGTCCCCCTTTAAATGCTCAAATAGAAGTTAACCTTATACGTGCACATTAAGCTCAATTATCTTCGTTCCTATGAGAGATATCAAAAATTTGTCAACTGATAAAATATTGGCGATATTATGAAAAATAATTTGTCAGTTGCAATTCTTTGGGTATCTTTTGAAGGAAACGAGATAATTGAGCTCAAAATGGACGTATAGGGTACGGCATTTATATGGGAAAATGTTATTATCCCTTACATCAAACTCCAATGAAAAGTAGTTTGCAAAGAACGCCAAGAATCCCTTGATATGCTTCACGGATCCGATTGGTGCCAACGCAAAGAATTTCTTGATCTTCTTCGCAAAACTTCCATCATCTTTCGACAAATGGCTGAACATTGTCAGGGTACCCTGCGAGTGACCCATATAGTACACACTCTCCTGTCCAGTCACTTCCAAAACGTGATTGATCATTGCGTTCAGGTCATAAGTCGCCATCTCATCCCAACTCCAATCCCAGAATGCTGAGTGAGATGGTTTCAAATTTTTATGCTTCATACTGTATGTGTTTCCACGCATGTTACCCATCCAAACGTCAAATCCAGCATCGGCGAAGATGAATCCTTAAGAATTCGGATGGTGGGATAGGAATACAAAATTGTGAAAGGTTGTACCTGCACTCTGATCTGGAAGGTTCAGAACCCAATCACTGGAAGCACAAAGGAGCCCGTGTTGCAGGAAAATTACTGGACGCTTTCCATTTGGCCATGTTACATTAGCTGAAACATATATTTTAAGAGATTGAGATGTCCGCAGAAAAGATAGAACTCACTTTTTCCAAATGGAATTCTGTGCATTTCCAGGATATATCCATCATCTGTGGTGACTGAATAAATCATCGCAGGATAT</canonical>
            <polymorphic>CTTTTCAACGGCGTTTTTTGGGGATTTCGGATTTTTTTCGAATTTTTTCGCAATAATATTCTGAAAATAGATAAATTTTAACACATTTTGATGCAATAAAAAATTGACCGGAGTCCCCCTTTAAATGCTCAAATAGAAGTTAACCTTATACGTGCACATTAAGCTCAATTATCTTCGTTCCTATGAGAGATATCAAAAATTTGTCAACTGATAAAATATTGGCGATATTATGAAAAATAATTTGTCAGTTGCAATTCTTTGGGTATCTTTTGAAGGAAACGAGATAATTGAGCTCAAAATGGACGTATAGGGTACGGCATTTATATGGGAAAATGTTATTATCCCTTACATCAAACTCCAATGAAAAGTAGTTTGCAAAGAACGCCAAGAATCCCTTGATATGCTTCACGGATCCGATTGGTGCCAACGCAAAGAATTTCTTGATCTTCTTCGCAAAACTTCCATCATCTTTCGACAAATGGCTGAACATTGTCAGGGTRCCCTGCGAGTGACCCATATAGTACACACTCTCCTGTCCAGTCACTTCCAAAACGTGATTGATCATTGCGTTCAGGTCATAAGTCGCCATCTCATCCCAACTCCAATCCCAGAATGCTGAGTGAGATGGTTTCAAATTTTTATGCTTCATACTGTATGTGTTTCCACGCATGTTACCCATCCAAACGTCAAATCCAGCATCGGCGAAGATGAATCCTTAAGAATTCGGATGGTGGGATAGGAATACAAAATTGTGAAAGGTTGTACCTGCACTCTGATCTGGAAGGTTCAGAACCCAATCACTGGAAGCACAAAGGAGCCCGTGTTGCAGGAAAATTACTGGACGCTTTCCATTTGGCCATGTTACATTAGCTGAAACATATATTTTAAGAGATTGAGATGTCCGCAGAAAAGATAGAACTCACTTTTTCCAAATGGAATTCTGTGCATTTCCAGGATATATCCATCATCTGTGGTGACTGAATAAATCATCGCAGGATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGTACC</site>
                <isoschizomers>
                    <enzyme>Acc65I</enzyme>
                    <enzyme>Asp718I</enzyme>
                    <enzyme>KpnI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>503 420 77</canonical_bands>
                <polymorphic_bands>580 420</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>313 241 237 186 23</canonical_bands>
                <polymorphic_bands>313 241 237 209</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACATCAAACTCCAATGAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>ATGAGATGGCGACTTATGAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TACATCAAACTCCAATGAAAAGTAGTTTGCAAAGAACGCCAAGAATCCCTTGATATGCTTCACGGATCCGATTGGTGCCAACGCAAAGAATTTCTTGATCTTCTTCGCAAAACTTCCATCATCTTTCGACAAATGGCTGAACATTGTCAGGGTACCCTGCGAGTGACCCATATAGTACACACTCTCCTGTCCAGTCACTTCCAAAACGTGATTGATCATTGCGTTCAGGTCATAAGTCGCCATCTCAT</canonical_amplicon>
		<polymorphic_amplicon>TACATCAAACTCCAATGAAAAGTAGTTTGCAAAGAACGCCAAGAATCCCTTGATATGCTTCACGGATCCGATTGGTGCCAACGCAAAGAATTTCTTGATCTTCTTCGCAAAACTTCCATCATCTTTCGACAAATGGCTGAACATTGTCAGGGTRCCCTGCGAGTGACCCATATAGTACACACTCTCCTGTCCAGTCACTTCCAAAACGTGATTGATCATTGCGTTCAGGTCATAAGTCGCCATCTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26792</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>579859</contig_pos>
        <strand>+</strand>
        <context>CAAAATTGTG[A/G]AAGGTTGTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGATGAATCCTTAAGAATTCGGATGGTGGGATAGGAATACAAAATTGTG</left_flank>
        <right_flank>AAGGTTGTACCTGCACTCTGATCTGGAAGGTTCAGAACCCAATCACTGGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTTGGGTATCTTTTGAAGGAAACGAGATAATTGAGCTCAAAATGGACGTATAGGGTACGGCATTTATATGGGAAAATGTTATTATCCCTTACATCAAACTCCAATGAAAAGTAGTTTGCAAAGAACGCCAAGAATCCCTTGATATGCTTCACGGATCCGATTGGTGCCAACGCAAAGAATTTCTTGATCTTCTTCGCAAAACTTCCATCATCTTTCGACAAATGGCTGAACATTGTCAGGGTACCCTGCGAGTGACCCATATAGTACACACTCTCCTGTCCAGTCACTTCCAAAACGTGATTGATCATTGCGTTCAGGTCATAAGTCGCCATCTCATCCCAACTCCAATCCCAGAATGCTGAGTGAGATGGTTTCAAATTTTTATGCTTCATACTGTATGTGTTTCCACGCATGTTACCCATCCAAACGTCAAATCCAGCATCGGCGAAGATGAATCCTTAAGAATTCGGATGGTGGGATAGGAATACAAAATTGTGAAAGGTTGTACCTGCACTCTGATCTGGAAGGTTCAGAACCCAATCACTGGAAGCACAAAGGAGCCCGTGTTGCAGGAAAATTACTGGACGCTTTCCATTTGGCCATGTTACATTAGCTGAAACATATATTTTAAGAGATTGAGATGTCCGCAGAAAAGATAGAACTCACTTTTTCCAAATGGAATTCTGTGCATTTCCAGGATATATCCATCATCTGTGGTGACTGAATAAATCATCGCAGGATATCCCCATCGCTCAATAATTTGGGGCTGAAAAAATCACAATTACAGTAATCCATTACTTACAGTAGTCATACAGTAATCTATCACTTACAGTAGTCATCTTCAACTCGGGGTCTCCTTTTCCCAGAACATCGTGAACGAAAAACGCCGCAAGCGACAGAAAAACGGCAAGACGCCACATAATTTTTCTGTCGAGTGAGTCGTTTGTCTTATCAAAAATGACATTATATACACCACGTGTTTCTCATGGCTCTCAATT</canonical>
            <polymorphic>TCTTTGGGTATCTTTTGAAGGAAACGAGATAATTGAGCTCAAAATGGACGTATAGGGTACGGCATTTATATGGGAAAATGTTATTATCCCTTACATCAAACTCCAATGAAAAGTAGTTTGCAAAGAACGCCAAGAATCCCTTGATATGCTTCACGGATCCGATTGGTGCCAACGCAAAGAATTTCTTGATCTTCTTCGCAAAACTTCCATCATCTTTCGACAAATGGCTGAACATTGTCAGGGTACCCTGCGAGTGACCCATATAGTACACACTCTCCTGTCCAGTCACTTCCAAAACGTGATTGATCATTGCGTTCAGGTCATAAGTCGCCATCTCATCCCAACTCCAATCCCAGAATGCTGAGTGAGATGGTTTCAAATTTTTATGCTTCATACTGTATGTGTTTCCACGCATGTTACCCATCCAAACGTCAAATCCAGCATCGGCGAAGATGAATCCTTAAGAATTCGGATGGTGGGATAGGAATACAAAATTGTGRAAGGTTGTACCTGCACTCTGATCTGGAAGGTTCAGAACCCAATCACTGGAAGCACAAAGGAGCCCGTGTTGCAGGAAAATTACTGGACGCTTTCCATTTGGCCATGTTACATTAGCTGAAACATATATTTTAAGAGATTGAGATGTCCGCAGAAAAGATAGAACTCACTTTTTCCAAATGGAATTCTGTGCATTTCCAGGATATATCCATCATCTGTGGTGACTGAATAAATCATCGCAGGATATCCCCATCGCTCAATAATTTGGGGCTGAAAAAATCACAATTACAGTAATCCATTACTTACAGTAGTCATACAGTAATCTATCACTTACAGTAGTCATCTTCAACTCGGGGTCTCCTTTTCCCAGAACATCGTGAACGAAAAACGCCGCAAGCGACAGAAAAACGGCAAGACGCCACATAATTTTTCTGTCGAGTGAGTCGTTTGTCTTATCAAAAATGACATTATATACACCACGTGTTTCTCATGGCTCTCAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGATGGTTTCAAATTTTTATG</pcr_primer_p1>
		<pcr_primer_p2>CTAATGTAACATGGCCAAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAGATGGTTTCAAATTTTTATGCTTCATACTGTATGTGTTTCCACGCATGTTACCCATCCAAACGTCAAATCCAGCATCGGCGAAGATGAATCCTTAAGAATTCGGATGGTGGGATAGGAATACAAAATTGTGAAAGGTTGTACCTGCACTCTGATCTGGAAGGTTCAGAACCCAATCACTGGAAGCACAAAGGAGCCCGTGTTGCAGGAAAATTACTGGACGCTTTCCATTTGGCCATGTTACATTAG</canonical_amplicon>
		<polymorphic_amplicon>TGAGATGGTTTCAAATTTTTATGCTTCATACTGTATGTGTTTCCACGCATGTTACCCATCCAAACGTCAAATCCAGCATCGGCGAAGATGAATCCTTAAGAATTCGGATGGTGGGATAGGAATACAAAATTGTGRAAGGTTGTACCTGCACTCTGATCTGGAAGGTTCAGAACCCAATCACTGGAAGCACAAAGGAGCCCGTGTTGCAGGAAAATTACTGGACGCTTTCCATTTGGCCATGTTACATTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26793</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>579940</contig_pos>
        <strand>+</strand>
        <context>GCAGGAAAAT[G/T]ACTGGACGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCAGAACCCAATCACTGGAAGCACAAAGGAGCCCGTGTTGCAGGAAAAT</left_flank>
        <right_flank>ACTGGACGCTTTCCATTTGGCCATGTTACATTAGCTGAAACATATATTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTATCCCTTACATCAAACTCCAATGAAAAGTAGTTTGCAAAGAACGCCAAGAATCCCTTGATATGCTTCACGGATCCGATTGGTGCCAACGCAAAGAATTTCTTGATCTTCTTCGCAAAACTTCCATCATCTTTCGACAAATGGCTGAACATTGTCAGGGTACCCTGCGAGTGACCCATATAGTACACACTCTCCTGTCCAGTCACTTCCAAAACGTGATTGATCATTGCGTTCAGGTCATAAGTCGCCATCTCATCCCAACTCCAATCCCAGAATGCTGAGTGAGATGGTTTCAAATTTTTATGCTTCATACTGTATGTGTTTCCACGCATGTTACCCATCCAAACGTCAAATCCAGCATCGGCGAAGATGAATCCTTAAGAATTCGGATGGTGGGATAGGAATACAAAATTGTGAAAGGTTGTACCTGCACTCTGATCTGGAAGGTTCAGAACCCAATCACTGGAAGCACAAAGGAGCCCGTGTTGCAGGAAAATTACTGGACGCTTTCCATTTGGCCATGTTACATTAGCTGAAACATATATTTTAAGAGATTGAGATGTCCGCAGAAAAGATAGAACTCACTTTTTCCAAATGGAATTCTGTGCATTTCCAGGATATATCCATCATCTGTGGTGACTGAATAAATCATCGCAGGATATCCCCATCGCTCAATAATTTGGGGCTGAAAAAATCACAATTACAGTAATCCATTACTTACAGTAGTCATACAGTAATCTATCACTTACAGTAGTCATCTTCAACTCGGGGTCTCCTTTTCCCAGAACATCGTGAACGAAAAACGCCGCAAGCGACAGAAAAACGGCAAGACGCCACATAATTTTTCTGTCGAGTGAGTCGTTTGTCTTATCAAAAATGACATTATATACACCACGTGTTTCTCATGGCTCTCAATTTTCAGATTCTGCTAAAAGTGATAAGAAATGGTAGTCAGGGGGAAGATGATTTGATACGTAAATTCAATAATAAAATCAAAA</canonical>
            <polymorphic>TATTATCCCTTACATCAAACTCCAATGAAAAGTAGTTTGCAAAGAACGCCAAGAATCCCTTGATATGCTTCACGGATCCGATTGGTGCCAACGCAAAGAATTTCTTGATCTTCTTCGCAAAACTTCCATCATCTTTCGACAAATGGCTGAACATTGTCAGGGTACCCTGCGAGTGACCCATATAGTACACACTCTCCTGTCCAGTCACTTCCAAAACGTGATTGATCATTGCGTTCAGGTCATAAGTCGCCATCTCATCCCAACTCCAATCCCAGAATGCTGAGTGAGATGGTTTCAAATTTTTATGCTTCATACTGTATGTGTTTCCACGCATGTTACCCATCCAAACGTCAAATCCAGCATCGGCGAAGATGAATCCTTAAGAATTCGGATGGTGGGATAGGAATACAAAATTGTGAAAGGTTGTACCTGCACTCTGATCTGGAAGGTTCAGAACCCAATCACTGGAAGCACAAAGGAGCCCGTGTTGCAGGAAAATKACTGGACGCTTTCCATTTGGCCATGTTACATTAGCTGAAACATATATTTTAAGAGATTGAGATGTCCGCAGAAAAGATAGAACTCACTTTTTCCAAATGGAATTCTGTGCATTTCCAGGATATATCCATCATCTGTGGTGACTGAATAAATCATCGCAGGATATCCCCATCGCTCAATAATTTGGGGCTGAAAAAATCACAATTACAGTAATCCATTACTTACAGTAGTCATACAGTAATCTATCACTTACAGTAGTCATCTTCAACTCGGGGTCTCCTTTTCCCAGAACATCGTGAACGAAAAACGCCGCAAGCGACAGAAAAACGGCAAGACGCCACATAATTTTTCTGTCGAGTGAGTCGTTTGTCTTATCAAAAATGACATTATATACACCACGTGTTTCTCATGGCTCTCAATTTTCAGATTCTGCTAAAAGTGATAAGAAATGGTAGTCAGGGGGAAGATGATTTGATACGTAAATTCAATAATAAAATCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>199 141 104 98 87 85 78 74 64 27 22 21</canonical_bands>
                <polymorphic_bands>199 189 141 98 87 78 74 64 27 22 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGGGATAGGAATACAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGTCACCACAGATGATGGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTGGGATAGGAATACAAAATTGTGAAAGGTTGTACCTGCACTCTGATCTGGAAGGTTCAGAACCCAATCACTGGAAGCACAAAGGAGCCCGTGTTGCAGGAAAATTACTGGACGCTTTCCATTTGGCCATGTTACATTAGCTGAAACATATATTTTAAGAGATTGAGATGTCCGCAGAAAAGATAGAACTCACTTTTTCCAAATGGAATTCTGTGCATTTCCAGGATATATCCATCATCTGTGGTGACT</canonical_amplicon>
		<polymorphic_amplicon>GGTGGGATAGGAATACAAAATTGTGAAAGGTTGTACCTGCACTCTGATCTGGAAGGTTCAGAACCCAATCACTGGAAGCACAAAGGAGCCCGTGTTGCAGGAAAATKACTGGACGCTTTCCATTTGGCCATGTTACATTAGCTGAAACATATATTTTAAGAGATTGAGATGTCCGCAGAAAAGATAGAACTCACTTTTTCCAAATGGAATTCTGTGCATTTCCAGGATATATCCATCATCTGTGGTGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26794</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>580182</contig_pos>
        <strand>+</strand>
        <context>TACAGTAATC[C/T]ATCACTTACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATCACAATTACAGTAATCCATTACTTACAGTAGTCATACAGTAATC</left_flank>
        <right_flank>ATCACTTACAGTAGTCATCTTCAACTCGGGGTCTCCTTTTCCCAGAACAT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGTCGCCATCTCATCCCAACTCCAATCCCAGAATGCTGAGTGAGATGGTTTCAAATTTTTATGCTTCATACTGTATGTGTTTCCACGCATGTTACCCATCCAAACGTCAAATCCAGCATCGGCGAAGATGAATCCTTAAGAATTCGGATGGTGGGATAGGAATACAAAATTGTGAAAGGTTGTACCTGCACTCTGATCTGGAAGGTTCAGAACCCAATCACTGGAAGCACAAAGGAGCCCGTGTTGCAGGAAAATTACTGGACGCTTTCCATTTGGCCATGTTACATTAGCTGAAACATATATTTTAAGAGATTGAGATGTCCGCAGAAAAGATAGAACTCACTTTTTCCAAATGGAATTCTGTGCATTTCCAGGATATATCCATCATCTGTGGTGACTGAATAAATCATCGCAGGATATCCCCATCGCTCAATAATTTGGGGCTGAAAAAATCACAATTACAGTAATCCATTACTTACAGTAGTCATACAGTAATCTATCACTTACAGTAGTCATCTTCAACTCGGGGTCTCCTTTTCCCAGAACATCGTGAACGAAAAACGCCGCAAGCGACAGAAAAACGGCAAGACGCCACATAATTTTTCTGTCGAGTGAGTCGTTTGTCTTATCAAAAATGACATTATATACACCACGTGTTTCTCATGGCTCTCAATTTTCAGATTCTGCTAAAAGTGATAAGAAATGGTAGTCAGGGGGAAGATGATTTGATACGTAAATTCAATAATAAAATCAAAATACAGTAGAACGACAGTGTAGGTGACGAAGGTACGAAGAAAAGGAAATTTTGAATTGTCAAAACTTATTTTTTAAGTTATTCAAAAGTTCATTTGCCAATCCAAAAGCCTAGTTTTGCAATTTCTCAGGCCCCTTGTAAATTGTGTCTTATCAAAGAACACGCATTATAATGCACATGAAAACACACAAACACGCATAGTTAGGGGGAAATTTGTTGATAAGATAATATGATTTAAATCAAT</canonical>
            <polymorphic>TAAGTCGCCATCTCATCCCAACTCCAATCCCAGAATGCTGAGTGAGATGGTTTCAAATTTTTATGCTTCATACTGTATGTGTTTCCACGCATGTTACCCATCCAAACGTCAAATCCAGCATCGGCGAAGATGAATCCTTAAGAATTCGGATGGTGGGATAGGAATACAAAATTGTGAAAGGTTGTACCTGCACTCTGATCTGGAAGGTTCAGAACCCAATCACTGGAAGCACAAAGGAGCCCGTGTTGCAGGAAAATTACTGGACGCTTTCCATTTGGCCATGTTACATTAGCTGAAACATATATTTTAAGAGATTGAGATGTCCGCAGAAAAGATAGAACTCACTTTTTCCAAATGGAATTCTGTGCATTTCCAGGATATATCCATCATCTGTGGTGACTGAATAAATCATCGCAGGATATCCCCATCGCTCAATAATTTGGGGCTGAAAAAATCACAATTACAGTAATCCATTACTTACAGTAGTCATACAGTAATCYATCACTTACAGTAGTCATCTTCAACTCGGGGTCTCCTTTTCCCAGAACATCGTGAACGAAAAACGCCGCAAGCGACAGAAAAACGGCAAGACGCCACATAATTTTTCTGTCGAGTGAGTCGTTTGTCTTATCAAAAATGACATTATATACACCACGTGTTTCTCATGGCTCTCAATTTTCAGATTCTGCTAAAAGTGATAAGAAATGGTAGTCAGGGGGAAGATGATTTGATACGTAAATTCAATAATAAAATCAAAATACAGTAGAACGACAGTGTAGGTGACGAAGGTACGAAGAAAAGGAAATTTTGAATTGTCAAAACTTATTTTTTAAGTTATTCAAAAGTTCATTTGCCAATCCAAAAGCCTAGTTTTGCAATTTCTCAGGCCCCTTGTAAATTGTGTCTTATCAAAGAACACGCATTATAATGCACATGAAAACACACAAACACGCATAGTTAGGGGGAAATTTGTTGATAAGATAATATGATTTAAATCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCATCTGTGGTGACTGAATAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTGATAAGACAAACGACTCACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCATCTGTGGTGACTGAATAAATCATCGCAGGATATCCCCATCGCTCAATAATTTGGGGCTGAAAAAATCACAATTACAGTAATCCATTACTTACAGTAGTCATACAGTAATCTATCACTTACAGTAGTCATCTTCAACTCGGGGTCTCCTTTTCCCAGAACATCGTGAACGAAAAACGCCGCAAGCGACAGAAAAACGGCAAGACGCCACATAATTTTTCTGTCGAGTGAGTCGTTTGTCTTATCAAA</canonical_amplicon>
		<polymorphic_amplicon>ATCATCTGTGGTGACTGAATAAATCATCGCAGGATATCCCCATCGCTCAATAATTTGGGGCTGAAAAAATCACAATTACAGTAATCCATTACTTACAGTAGTCATACAGTAATCYATCACTTACAGTAGTCATCTTCAACTCGGGGTCTCCTTTTCCCAGAACATCGTGAACGAAAAACGCCGCAAGCGACAGAAAAACGGCAAGACGCCACATAATTTTTCTGTCGAGTGAGTCGTTTGTCTTATCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26795</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>597406</contig_pos>
        <strand>+</strand>
        <context>TATAAACTTC[C/G]TCTTGAAACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAGTTTGAAATTTCTAGAAAGGTATCTTTGGTCTTCTTCTTATAAACTTC</left_flank>
        <right_flank>TCTTGAAACAAAGAAACTTATGAATCAATTTGTACTTAATTGGGTACTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAGAAAAGGAGAGAATGCGTGATTTTGTGGATAAGGATGGGAAGCCTCTGTATTTTTCCAAAGAGAATGCAACACAGATTTATGGAGAGTATGAAGCGGGAAAGTTGGATTTGTTGGATGGATTTTATAAGTCGTTGTCTGCAGAACAGGTAAATTTGAAGTCCGTTCTTTCGGAAATAAGCTCAGTCATCCAGAAACTTCTAGGGCTGCTTGGCCACCTACATATTAACAATATCCTTATCTTTTTAGATGTCTTCAATTTTCAGATGCAATCCATGAACAAAACCGGGTACACTATAATGGACGATAAGCAGCTGGAAACCATCTATGGACCAAATTCTCCATTCAACAACTCGGAAGCGTTAGAAAAATTCAAAGGGATATCACCAGAGAGTATGCCGGAGAGGATAGAGGAGAATATAAGATTGATAGCAAATGAAGAGATGAAGTTTGAAATTTCTAGAAAGGTATCTTTGGTCTTCTTCTTATAAACTTCCTCTTGAAACAAAGAAACTTATGAATCAATTTGTACTTAATTGGGTACTAATGACCTCGTGATGTCATTATTTGTGATTTTCTGCAGTCAAAAAAACTTGCAAAATGTAATTGAGGTGGGATGGTAAAAAGTTAGGGGTCAGTTTGAAAGTAAACTGGTATCACGTTTACGGTGTTTGCTCTAACATAATCCCATGCATTTTGATCCTAATTATCTCGGTACCTTCGAGAGATTTTAAAAATCTGTCAACTGGTAATTTATAACCCATAATATCACCAATATTTTATCAGTTGACAAAATTTTGACATCGCTCATTGGAAACAAAATAATTGAGATCAAAGTCAGTGTATAGAGTGGACCTATTAGGTCAGCCGCAATTTTACCGGGCGCGTAGTGAAGTTGTAAAAATTTTTTTTGATATATTTTAATATCCTTTGTATCTTTAGTTTTACAATTTCTAGAAACATGATCATTACATCAAAATGTTGGAAATATTGTGAT</canonical>
            <polymorphic>AAGAAGAAAAGGAGAGAATGCGTGATTTTGTGGATAAGGATGGGAAGCCTCTGTATTTTTCCAAAGAGAATGCAACACAGATTTATGGAGAGTATGAAGCGGGAAAGTTGGATTTGTTGGATGGATTTTATAAGTCGTTGTCTGCAGAACAGGTAAATTTGAAGTCCGTTCTTTCGGAAATAAGCTCAGTCATCCAGAAACTTCTAGGGCTGCTTGGCCACCTACATATTAACAATATCCTTATCTTTTTAGATGTCTTCAATTTTCAGATGCAATCCATGAACAAAACCGGGTACACTATAATGGACGATAAGCAGCTGGAAACCATCTATGGACCAAATTCTCCATTCAACAACTCGGAAGCGTTAGAAAAATTCAAAGGGATATCACCAGAGAGTATGCCGGAGAGGATAGAGGAGAATATAAGATTGATAGCAAATGAAGAGATGAAGTTTGAAATTTCTAGAAAGGTATCTTTGGTCTTCTTCTTATAAACTTCSTCTTGAAACAAAGAAACTTATGAATCAATTTGTACTTAATTGGGTACTAATGACCTCGTGATGTCATTATTTGTGATTTTCTGCAGTCAAAAAAACTTGCAAAATGTAATTGAGGTGGGATGGTAAAAAGTTAGGGGTCAGTTTGAAAGTAAACTGGTATCACGTTTACGGTGTTTGCTCTAACATAATCCCATGCATTTTGATCCTAATTATCTCGGTACCTTCGAGAGATTTTAAAAATCTGTCAACTGGTAATTTATAACCCATAATATCACCAATATTTTATCAGTTGACAAAATTTTGACATCGCTCATTGGAAACAAAATAATTGAGATCAAAGTCAGTGTATAGAGTGGACCTATTAGGTCAGCCGCAATTTTACCGGGCGCGTAGTGAAGTTGTAAAAATTTTTTTTGATATATTTTAATATCCTTTGTATCTTTAGTTTTACAATTTCTAGAAACATGATCATTACATCAAAATGTTGGAAATATTGTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGATTGATAGCAAATGAAGAGA</pcr_primer_p1>
		<pcr_primer_p2>AACGTGATACCAGTTTACTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AAGATTGATAGCAAATGAAGAGATGAAGTTTGAAATTTCTAGAAAGGTATCTTTGGTCTTCTTCTTATAAACTTCCTCTTGAAACAAAGAAACTTATGAATCAATTTGTACTTAATTGGGTACTAATGACCTCGTGATGTCATTATTTGTGATTTTCTGCAGTCAAAAAAACTTGCAAAATGTAATTGAGGTGGGATGGTAAAAAGTTAGGGGTCAGTTTGAAAGTAAACTGGTATCACGTT</canonical_amplicon>
		<polymorphic_amplicon>AAGATTGATAGCAAATGAAGAGATGAAGTTTGAAATTTCTAGAAAGGTATCTTTGGTCTTCTTCTTATAAACTTCSTCTTGAAACAAAGAAACTTATGAATCAATTTGTACTTAATTGGGTACTAATGACCTCGTGATGTCATTATTTGTGATTTTCTGCAGTCAAAAAAACTTGCAAAATGTAATTGAGGTGGGATGGTAAAAAGTTAGGGGTCAGTTTGAAAGTAAACTGGTATCACGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26796</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>604337</contig_pos>
        <strand>+</strand>
        <context>tatgagACAA[C/T]GAATTTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGGCTATTATCATTACGGAAAAGCTCATACTCGGTTCTGTATGAGACAA</left_flank>
        <right_flank>GAATTTTTTTAAAAGTCTAAAAACCGTTTCATTCAATTTCAAAAAATAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTACTCGAAGAAAATTGATAGTATGCAAAACTTTCACAAATTTTGGTGAATTCGGAAACTCGAAAATTTTTAAATTAGAAATGCAATTGTAAGATACAGAAAGCGGAAGCCAGGAGGTTGAGCCCCCGACAGGGGGCGTAAACCGACTGGTTTTTTTTTCAAATGTTTTATTCAAGTGGATTCATTTTATCCACGAAAACGGTTTTTTATCACGTTTAAAAATCATTAGAATTTTCTCTTTTGAAATCTGTGAAACTCCTCAAAAGGCCCCTTTGAACCTAGTAATCTCGTTTCCAGTTTGAGATATCGAAAAATGTTCAACTGATGAAATGTCTTTGATATCAAAACAAATATTTTTGCTTCTGAAAATTTTTTGATACTTTTCACGAAAACCAAGATACATCGACTCAAAGACTCTTCGATTTTTCGAATTTCAGAGTGTTGCAGGTGGCTATTATCATTACGGAAAAGCTCATACTCGGTTCTGTATGAGACAACGAATTTTTTTAAAAGTCTAAAAACCGTTTCATTCAATTTCAAAAAATAAATAAACTAATCAAAGAGTACTCAACCAACTTGGTGATAAAACAGCAGTGAAAACTGCCCCATTTGATAATACCGCAGGTGACAAAGCATAGGGATTCAGAACGAAAGCTGACACAAACGGAGGTGATAATACTAAAGGTGATAAAACGAATGGGGATAGGACCAGTGGGGTTAAAGCATTGGGAATTCCAATAAAGGGTGATAAGGCAAACGGTGACAAAATCAGAGGAGCCATGACCACAGGTGATAGGATAAAGGGGCACATTACAAATGGAGATAGGACGAAGGGTAAACCGACGCCCGGGGATAGGATAAGAGGGACCAGTGCCAGTGGGGTGAGGATTGCAGGAGAGAAGACTACGGGAGACAAAACAACGGCACCAAGGATACGAGGACTAACTAGGACAGGTACAAAGACCCAGGGAGATAGAATTACATTACCGTATATAGAA</canonical>
            <polymorphic>TATTACTCGAAGAAAATTGATAGTATGCAAAACTTTCACAAATTTTGGTGAATTCGGAAACTCGAAAATTTTTAAATTAGAAATGCAATTGTAAGATACAGAAAGCGGAAGCCAGGAGGTTGAGCCCCCGACAGGGGGCGTAAACCGACTGGTTTTTTTTTCAAATGTTTTATTCAAGTGGATTCATTTTATCCACGAAAACGGTTTTTTATCACGTTTAAAAATCATTAGAATTTTCTCTTTTGAAATCTGTGAAACTCCTCAAAAGGCCCCTTTGAACCTAGTAATCTCGTTTCCAGTTTGAGATATCGAAAAATGTTCAACTGATGAAATGTCTTTGATATCAAAACAAATATTTTTGCTTCTGAAAATTTTTTGATACTTTTCACGAAAACCAAGATACATCGACTCAAAGACTCTTCGATTTTTCGAATTTCAGAGTGTTGCAGGTGGCTATTATCATTACGGAAAAGCTCATACTCGGTTCTGTATGAGACAAYGAATTTTTTTAAAAGTCTAAAAACCGTTTCATTCAATTTCAAAAAATAAATAAACTAATCAAAGAGTACTCAACCAACTTGGTGATAAAACAGCAGTGAAAACTGCCCCATTTGATAATACCGCAGGTGACAAAGCATAGGGATTCAGAACGAAAGCTGACACAAACGGAGGTGATAATACTAAAGGTGATAAAACGAATGGGGATAGGACCAGTGGGGTTAAAGCATTGGGAATTCCAATAAAGGGTGATAAGGCAAACGGTGACAAAATCAGAGGAGCCATGACCACAGGTGATAGGATAAAGGGGCACATTACAAATGGAGATAGGACGAAGGGTAAACCGACGCCCGGGGATAGGATAAGAGGGACCAGTGCCAGTGGGGTGAGGATTGCAGGAGAGAAGACTACGGGAGACAAAACAACGGCACCAAGGATACGAGGACTAACTAGGACAGGTACAAAGACCCAGGGAGATAGAATTACATTACCGTATATAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTCATTTTATCCACGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTGGTTGAGTACTCTTTGATTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>397</pcr_amplicon_size>
		<canonical_amplicon>GATTCATTTTATCCACGAAAACGGTTTTTTATCACGTTTAAAAATCATTAGAATTTTCTCTTTTGAAATCTGTGAAACTCCTCAAAAGGCCCCTTTGAACCTAGTAATCTCGTTTCCAGTTTGAGATATCGAAAAATGTTCAACTGATGAAATGTCTTTGATATCAAAACAAATATTTTTGCTTCTGAAAATTTTTTGATACTTTTCACGAAAACCAAGATACATCGACTCAAAGACTCTTCGATTTTTCGAATTTCAGAGTGTTGCAGGTGGCTATTATCATTACGGAAAAGCTCATACTCGGTTCTGTATGAGACAACGAATTTTTTTAAAAGTCTAAAAACCGTTTCATTCAATTTCAAAAAATAAATAAACTAATCAAAGAGTACTCAACCAA</canonical_amplicon>
		<polymorphic_amplicon>GATTCATTTTATCCACGAAAACGGTTTTTTATCACGTTTAAAAATCATTAGAATTTTCTCTTTTGAAATCTGTGAAACTCCTCAAAAGGCCCCTTTGAACCTAGTAATCTCGTTTCCAGTTTGAGATATCGAAAAATGTTCAACTGATGAAATGTCTTTGATATCAAAACAAATATTTTTGCTTCTGAAAATTTTTTGATACTTTTCACGAAAACCAAGATACATCGACTCAAAGACTCTTCGATTTTTCGAATTTCAGAGTGTTGCAGGTGGCTATTATCATTACGGAAAAGCTCATACTCGGTTCTGTATGAGACAAYGAATTTTTTTAAAAGTCTAAAAACCGTTTCATTCAATTTCAAAAAATAAATAAACTAATCAAAGAGTACTCAACCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26797</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>604582</contig_pos>
        <strand>+</strand>
        <context>TTCCAATAAA[A/G]GGTGATAAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGAATGGGGATAGGACCAGTGGGGTTAAAGCATTGGGAATTCCAATAAA</left_flank>
        <right_flank>GGTGATAAGGCAAACGGTGACAAAATCAGAGGAGCCATGACCACAGGTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCTGTGAAACTCCTCAAAAGGCCCCTTTGAACCTAGTAATCTCGTTTCCAGTTTGAGATATCGAAAAATGTTCAACTGATGAAATGTCTTTGATATCAAAACAAATATTTTTGCTTCTGAAAATTTTTTGATACTTTTCACGAAAACCAAGATACATCGACTCAAAGACTCTTCGATTTTTCGAATTTCAGAGTGTTGCAGGTGGCTATTATCATTACGGAAAAGCTCATACTCGGTTCTGTATGAGACAACGAATTTTTTTAAAAGTCTAAAAACCGTTTCATTCAATTTCAAAAAATAAATAAACTAATCAAAGAGTACTCAACCAACTTGGTGATAAAACAGCAGTGAAAACTGCCCCATTTGATAATACCGCAGGTGACAAAGCATAGGGATTCAGAACGAAAGCTGACACAAACGGAGGTGATAATACTAAAGGTGATAAAACGAATGGGGATAGGACCAGTGGGGTTAAAGCATTGGGAATTCCAATAAAGGGTGATAAGGCAAACGGTGACAAAATCAGAGGAGCCATGACCACAGGTGATAGGATAAAGGGGCACATTACAAATGGAGATAGGACGAAGGGTAAACCGACGCCCGGGGATAGGATAAGAGGGACCAGTGCCAGTGGGGTGAGGATTGCAGGAGAGAAGACTACGGGAGACAAAACAACGGCACCAAGGATACGAGGACTAACTAGGACAGGTACAAAGACCCAGGGAGATAGAATTACATTACCGTATATAGAAGGAGAGAAAATGATGGGTGCTAGAAGGACGGGGGATAAAATGATAGATTGGGAAGCTGTAACGGCATCCCCGACAAGAGATGTGAGAACCAGAGGGCTCAATACGATATCTTTTTTTCGGGAAAGTTCAAATTTTAGTTCTTCCTTTGCAATCATTCGAATGTTCTCCTCGATTTTGGATGGCATGCTTTCTTTGGGGATTCCACGGAACTTGTCCAAGACTTCAGAGTCGTTGTAGGGGGATCC</canonical>
            <polymorphic>AAATCTGTGAAACTCCTCAAAAGGCCCCTTTGAACCTAGTAATCTCGTTTCCAGTTTGAGATATCGAAAAATGTTCAACTGATGAAATGTCTTTGATATCAAAACAAATATTTTTGCTTCTGAAAATTTTTTGATACTTTTCACGAAAACCAAGATACATCGACTCAAAGACTCTTCGATTTTTCGAATTTCAGAGTGTTGCAGGTGGCTATTATCATTACGGAAAAGCTCATACTCGGTTCTGTATGAGACAACGAATTTTTTTAAAAGTCTAAAAACCGTTTCATTCAATTTCAAAAAATAAATAAACTAATCAAAGAGTACTCAACCAACTTGGTGATAAAACAGCAGTGAAAACTGCCCCATTTGATAATACCGCAGGTGACAAAGCATAGGGATTCAGAACGAAAGCTGACACAAACGGAGGTGATAATACTAAAGGTGATAAAACGAATGGGGATAGGACCAGTGGGGTTAAAGCATTGGGAATTCCAATAAARGGTGATAAGGCAAACGGTGACAAAATCAGAGGAGCCATGACCACAGGTGATAGGATAAAGGGGCACATTACAAATGGAGATAGGACGAAGGGTAAACCGACGCCCGGGGATAGGATAAGAGGGACCAGTGCCAGTGGGGTGAGGATTGCAGGAGAGAAGACTACGGGAGACAAAACAACGGCACCAAGGATACGAGGACTAACTAGGACAGGTACAAAGACCCAGGGAGATAGAATTACATTACCGTATATAGAAGGAGAGAAAATGATGGGTGCTAGAAGGACGGGGGATAAAATGATAGATTGGGAAGCTGTAACGGCATCCCCGACAAGAGATGTGAGAACCAGAGGGCTCAATACGATATCTTTTTTTCGGGAAAGTTCAAATTTTAGTTCTTCCTTTGCAATCATTCGAATGTTCTCCTCGATTTTGGATGGCATGCTTTCTTTGGGGATTCCACGGAACTTGTCCAAGACTTCAGAGTCGTTGTAGGGGGATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGATAAAACAGCAGTGAAAACT</pcr_primer_p1>
		<pcr_primer_p2>GTCCTATCTCCATTTGTAATGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGATAAAACAGCAGTGAAAACTGCCCCATTTGATAATACCGCAGGTGACAAAGCATAGGGATTCAGAACGAAAGCTGACACAAACGGAGGTGATAATACTAAAGGTGATAAAACGAATGGGGATAGGACCAGTGGGGTTAAAGCATTGGGAATTCCAATAAAGGGTGATAAGGCAAACGGTGACAAAATCAGAGGAGCCATGACCACAGGTGATAGGATAAAGGGGCACATTACAAATGGAGATAGGAC</canonical_amplicon>
		<polymorphic_amplicon>GTGATAAAACAGCAGTGAAAACTGCCCCATTTGATAATACCGCAGGTGACAAAGCATAGGGATTCAGAACGAAAGCTGACACAAACGGAGGTGATAATACTAAAGGTGATAAAACGAATGGGGATAGGACCAGTGGGGTTAAAGCATTGGGAATTCCAATAAARGGTGATAAGGCAAACGGTGACAAAATCAGAGGAGCCATGACCACAGGTGATAGGATAAAGGGGCACATTACAAATGGAGATAGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26798</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>604813</contig_pos>
        <strand>+</strand>
        <context>CCCAGGGAGA[C/T]AGAATTACAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCACCAAGGATACGAGGACTAACTAGGACAGGTACAAAGACCCAGGGAGA</left_flank>
        <right_flank>AGAATTACATTACCGTATATAGAAGGAGAGAAAATGATGGGTGCTAGAAG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATACTCGGTTCTGTATGAGACAACGAATTTTTTTAAAAGTCTAAAAACCGTTTCATTCAATTTCAAAAAATAAATAAACTAATCAAAGAGTACTCAACCAACTTGGTGATAAAACAGCAGTGAAAACTGCCCCATTTGATAATACCGCAGGTGACAAAGCATAGGGATTCAGAACGAAAGCTGACACAAACGGAGGTGATAATACTAAAGGTGATAAAACGAATGGGGATAGGACCAGTGGGGTTAAAGCATTGGGAATTCCAATAAAGGGTGATAAGGCAAACGGTGACAAAATCAGAGGAGCCATGACCACAGGTGATAGGATAAAGGGGCACATTACAAATGGAGATAGGACGAAGGGTAAACCGACGCCCGGGGATAGGATAAGAGGGACCAGTGCCAGTGGGGTGAGGATTGCAGGAGAGAAGACTACGGGAGACAAAACAACGGCACCAAGGATACGAGGACTAACTAGGACAGGTACAAAGACCCAGGGAGATAGAATTACATTACCGTATATAGAAGGAGAGAAAATGATGGGTGCTAGAAGGACGGGGGATAAAATGATAGATTGGGAAGCTGTAACGGCATCCCCGACAAGAGATGTGAGAACCAGAGGGCTCAATACGATATCTTTTTTTCGGGAAAGTTCAAATTTTAGTTCTTCCTTTGCAATCATTCGAATGTTCTCCTCGATTTTGGATGGCATGCTTTCTTTGGGGATTCCACGGAACTTGTCCAAGACTTCAGAGTCGTTGTAGGGGGATCCAGCACCGTAGATCATTTCCATTTGACGATCGTCGAGGATACTGTAGCCGGTAGCATTCATTGCATCCATCTGGAAAATTCACAGTGTATCGATTTATAGGATACTGCCCGGGCTAGAGTACTGAAATCTAAAATGCCGCATTTTCTCTGATAGATTCTTACCCTATACATTCACTTTGAGCTCAATTATCTCGGTTCCTATAAAAGATATCAAAAAGTGGTCAACTGATAA</canonical>
            <polymorphic>ATACTCGGTTCTGTATGAGACAACGAATTTTTTTAAAAGTCTAAAAACCGTTTCATTCAATTTCAAAAAATAAATAAACTAATCAAAGAGTACTCAACCAACTTGGTGATAAAACAGCAGTGAAAACTGCCCCATTTGATAATACCGCAGGTGACAAAGCATAGGGATTCAGAACGAAAGCTGACACAAACGGAGGTGATAATACTAAAGGTGATAAAACGAATGGGGATAGGACCAGTGGGGTTAAAGCATTGGGAATTCCAATAAAGGGTGATAAGGCAAACGGTGACAAAATCAGAGGAGCCATGACCACAGGTGATAGGATAAAGGGGCACATTACAAATGGAGATAGGACGAAGGGTAAACCGACGCCCGGGGATAGGATAAGAGGGACCAGTGCCAGTGGGGTGAGGATTGCAGGAGAGAAGACTACGGGAGACAAAACAACGGCACCAAGGATACGAGGACTAACTAGGACAGGTACAAAGACCCAGGGAGAYAGAATTACATTACCGTATATAGAAGGAGAGAAAATGATGGGTGCTAGAAGGACGGGGGATAAAATGATAGATTGGGAAGCTGTAACGGCATCCCCGACAAGAGATGTGAGAACCAGAGGGCTCAATACGATATCTTTTTTTCGGGAAAGTTCAAATTTTAGTTCTTCCTTTGCAATCATTCGAATGTTCTCCTCGATTTTGGATGGCATGCTTTCTTTGGGGATTCCACGGAACTTGTCCAAGACTTCAGAGTCGTTGTAGGGGGATCCAGCACCGTAGATCATTTCCATTTGACGATCGTCGAGGATACTGTAGCCGGTAGCATTCATTGCATCCATCTGGAAAATTCACAGTGTATCGATTTATAGGATACTGCCCGGGCTAGAGTACTGAAATCTAAAATGCCGCATTTTCTCTGATAGATTCTTACCCTATACATTCACTTTGAGCTCAATTATCTCGGTTCCTATAAAAGATATCAAAAAGTGGTCAACTGATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACATTACAAATGGAGATAGGAC</pcr_primer_p1>
		<pcr_primer_p2>GCTTCCCAATCTATCATTTTATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CACATTACAAATGGAGATAGGACGAAGGGTAAACCGACGCCCGGGGATAGGATAAGAGGGACCAGTGCCAGTGGGGTGAGGATTGCAGGAGAGAAGACTACGGGAGACAAAACAACGGCACCAAGGATACGAGGACTAACTAGGACAGGTACAAAGACCCAGGGAGATAGAATTACATTACCGTATATAGAAGGAGAGAAAATGATGGGTGCTAGAAGGACGGGGGATAAAATGATAGATTGGGAAGC</canonical_amplicon>
		<polymorphic_amplicon>CACATTACAAATGGAGATAGGACGAAGGGTAAACCGACGCCCGGGGATAGGATAAGAGGGACCAGTGCCAGTGGGGTGAGGATTGCAGGAGAGAAGACTACGGGAGACAAAACAACGGCACCAAGGATACGAGGACTAACTAGGACAGGTACAAAGACCCAGGGAGAYAGAATTACATTACCGTATATAGAAGGAGAGAAAATGATGGGTGCTAGAAGGACGGGGGATAAAATGATAGATTGGGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26799</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>608066</contig_pos>
        <strand>+</strand>
        <context>ccTAGGCTGA[A/G]AAGTGTTCCC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAAGTGTCCCAGAAAACTCGTTTTGCGAAAGTTAGGTCACCTAGGCTGA</left_flank>
        <right_flank>AAGTGTTCCCCGGTACTATATCTTCAAATTCAAAAAATTTTCGTTCACCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACATCTAGTCGTTAGGGTACTGTACATTTTTAGCTTCTCGTTTCGTTTCTTCAACTGATCAAGTACAGTAACCACGCACTTTGCATGAGCAGTCACATTTTTGGATTCATGGATGCACACGTAGTGCTCCTTTTTCTCGTTTTTCGTCATTTTGCGCTTGTTGATTCTGGAATTTTTATGAAGTTGTTTACCATGATGGCCTAGAAAACAACACATGCAAAAGTTAGGTCACCATGATGAGATGATCTAGAAAACCCGCCAGGTGTCTAATTGTTGGAAAAAACAGTATCTTTTGAGGTTTTCTGATTTCACCCGATGGACAAAATTGAAACATTTCTAGTCCATTTACCATGGTGGACTAGGTTTCCAACAAAATTTTTTCAGGCCATCAGGGTGAATAGCCTAGAAATGACCTAATAATTACCTAGTGGGTTTTCTGGGCTTTCACCAAAGTGTCCCAGAAAACTCGTTTTGCGAAAGTTAGGTCACCTAGGCTGAGAAGTGTTCCCCGGTACTATATCTTCAAATTCAAAAAATTTTCGTTCACCAAACACGCCCAATGCAAAAAATGCCCTACACATTAGTAACAACTGCTCCCATCAATCCAGCCAAACTTTGGTCCATCCAGTGTTTATACAAATCATCTCTAGCTTCATCAGATATGGTAACGATTGTTTTATTGCCATCATGACTGATTGTATTCACTTTTCGGTGCTCCACATCGTCATCCGGAACGTCTGCCACGTCTTCGTCGCGTATTATGAAGTCTAGTGTCTGCAACTTTCAAGTTCAAGCCTATTTATCTGGATACCTGGGAGAGATATCAAAAAGCAGTCAACTTGTAAAATTCTTATCATATTATGCGTAAAATTTTGTTAGTTGGCATCTTTTTGATATCTAATACAGTAACCGAGATAAATTGAGTCGAAGCACGGTACTTGCAATAATAGAAGCCCGCCCAATACCTTCACTTTGAGCTCAATTATCTCGGTTCCAGTG</canonical>
            <polymorphic>TACATCTAGTCGTTAGGGTACTGTACATTTTTAGCTTCTCGTTTCGTTTCTTCAACTGATCAAGTACAGTAACCACGCACTTTGCATGAGCAGTCACATTTTTGGATTCATGGATGCACACGTAGTGCTCCTTTTTCTCGTTTTTCGTCATTTTGCGCTTGTTGATTCTGGAATTTTTATGAAGTTGTTTACCATGATGGCCTAGAAAACAACACATGCAAAAGTTAGGTCACCATGATGAGATGATCTAGAAAACCCGCCAGGTGTCTAATTGTTGGAAAAAACAGTATCTTTTGAGGTTTTCTGATTTCACCCGATGGACAAAATTGAAACATTTCTAGTCCATTTACCATGGTGGACTAGGTTTCCAACAAAATTTTTTCAGGCCATCAGGGTGAATAGCCTAGAAATGACCTAATAATTACCTAGTGGGTTTTCTGGGCTTTCACCAAAGTGTCCCAGAAAACTCGTTTTGCGAAAGTTAGGTCACCTAGGCTGARAAGTGTTCCCCGGTACTATATCTTCAAATTCAAAAAATTTTCGTTCACCAAACACGCCCAATGCAAAAAATGCCCTACACATTAGTAACAACTGCTCCCATCAATCCAGCCAAACTTTGGTCCATCCAGTGTTTATACAAATCATCTCTAGCTTCATCAGATATGGTAACGATTGTTTTATTGCCATCATGACTGATTGTATTCACTTTTCGGTGCTCCACATCGTCATCCGGAACGTCTGCCACGTCTTCGTCGCGTATTATGAAGTCTAGTGTCTGCAACTTTCAAGTTCAAGCCTATTTATCTGGATACCTGGGAGAGATATCAAAAAGCAGTCAACTTGTAAAATTCTTATCATATTATGCGTAAAATTTTGTTAGTTGGCATCTTTTTGATATCTAATACAGTAACCGAGATAAATTGAGTCGAAGCACGGTACTTGCAATAATAGAAGCCCGCCCAATACCTTCACTTTGAGCTCAATTATCTCGGTTCCAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGGTTTTCTGATTTCACC</pcr_primer_p1>
		<pcr_primer_p2>GAGCAGTTGTTACTAATGTGTAGG</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>TGAGGTTTTCTGATTTCACCCGATGGACAAAATTGAAACATTTCTAGTCCATTTACCATGGTGGACTAGGTTTCCAACAAAATTTTTTCAGGCCATCAGGGTGAATAGCCTAGAAATGACCTAATAATTACCTAGTGGGTTTTCTGGGCTTTCACCAAAGTGTCCCAGAAAACTCGTTTTGCGAAAGTTAGGTCACCTAGGCTGAGAAGTGTTCCCCGGTACTATATCTTCAAATTCAAAAAATTTTCGTTCACCAAACACGCCCAATGCAAAAAATGCCCTACACATTAGTAACAACTGCTC</canonical_amplicon>
		<polymorphic_amplicon>TGAGGTTTTCTGATTTCACCCGATGGACAAAATTGAAACATTTCTAGTCCATTTACCATGGTGGACTAGGTTTCCAACAAAATTTTTTCAGGCCATCAGGGTGAATAGCCTAGAAATGACCTAATAATTACCTAGTGGGTTTTCTGGGCTTTCACCAAAGTGTCCCAGAAAACTCGTTTTGCGAAAGTTAGGTCACCTAGGCTGARAAGTGTTCCCCGGTACTATATCTTCAAATTCAAAAAATTTTCGTTCACCAAACACGCCCAATGCAAAAAATGCCCTACACATTAGTAACAACTGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26800</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>608108</contig_pos>
        <strand>+</strand>
        <context>AAAAAATTTT[C/G]GTTCACCAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAGGCTGAGAAGTGTTCCCCGGTACTATATCTTCAAATTCAAAAAATTTT</left_flank>
        <right_flank>GTTCACCAAACACGCCCAATGCAAAAAATGCCCTACACATTAGTAACAAC</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGTTTCTTCAACTGATCAAGTACAGTAACCACGCACTTTGCATGAGCAGTCACATTTTTGGATTCATGGATGCACACGTAGTGCTCCTTTTTCTCGTTTTTCGTCATTTTGCGCTTGTTGATTCTGGAATTTTTATGAAGTTGTTTACCATGATGGCCTAGAAAACAACACATGCAAAAGTTAGGTCACCATGATGAGATGATCTAGAAAACCCGCCAGGTGTCTAATTGTTGGAAAAAACAGTATCTTTTGAGGTTTTCTGATTTCACCCGATGGACAAAATTGAAACATTTCTAGTCCATTTACCATGGTGGACTAGGTTTCCAACAAAATTTTTTCAGGCCATCAGGGTGAATAGCCTAGAAATGACCTAATAATTACCTAGTGGGTTTTCTGGGCTTTCACCAAAGTGTCCCAGAAAACTCGTTTTGCGAAAGTTAGGTCACCTAGGCTGAGAAGTGTTCCCCGGTACTATATCTTCAAATTCAAAAAATTTTCGTTCACCAAACACGCCCAATGCAAAAAATGCCCTACACATTAGTAACAACTGCTCCCATCAATCCAGCCAAACTTTGGTCCATCCAGTGTTTATACAAATCATCTCTAGCTTCATCAGATATGGTAACGATTGTTTTATTGCCATCATGACTGATTGTATTCACTTTTCGGTGCTCCACATCGTCATCCGGAACGTCTGCCACGTCTTCGTCGCGTATTATGAAGTCTAGTGTCTGCAACTTTCAAGTTCAAGCCTATTTATCTGGATACCTGGGAGAGATATCAAAAAGCAGTCAACTTGTAAAATTCTTATCATATTATGCGTAAAATTTTGTTAGTTGGCATCTTTTTGATATCTAATACAGTAACCGAGATAAATTGAGTCGAAGCACGGTACTTGCAATAATAGAAGCCCGCCCAATACCTTCACTTTGAGCTCAATTATCTCGGTTCCAGTGAAAGCTATCAGAAAGCGGTCAACAAACAAAATGCTGATCATA</canonical>
            <polymorphic>TTCGTTTCTTCAACTGATCAAGTACAGTAACCACGCACTTTGCATGAGCAGTCACATTTTTGGATTCATGGATGCACACGTAGTGCTCCTTTTTCTCGTTTTTCGTCATTTTGCGCTTGTTGATTCTGGAATTTTTATGAAGTTGTTTACCATGATGGCCTAGAAAACAACACATGCAAAAGTTAGGTCACCATGATGAGATGATCTAGAAAACCCGCCAGGTGTCTAATTGTTGGAAAAAACAGTATCTTTTGAGGTTTTCTGATTTCACCCGATGGACAAAATTGAAACATTTCTAGTCCATTTACCATGGTGGACTAGGTTTCCAACAAAATTTTTTCAGGCCATCAGGGTGAATAGCCTAGAAATGACCTAATAATTACCTAGTGGGTTTTCTGGGCTTTCACCAAAGTGTCCCAGAAAACTCGTTTTGCGAAAGTTAGGTCACCTAGGCTGAGAAGTGTTCCCCGGTACTATATCTTCAAATTCAAAAAATTTTSGTTCACCAAACACGCCCAATGCAAAAAATGCCCTACACATTAGTAACAACTGCTCCCATCAATCCAGCCAAACTTTGGTCCATCCAGTGTTTATACAAATCATCTCTAGCTTCATCAGATATGGTAACGATTGTTTTATTGCCATCATGACTGATTGTATTCACTTTTCGGTGCTCCACATCGTCATCCGGAACGTCTGCCACGTCTTCGTCGCGTATTATGAAGTCTAGTGTCTGCAACTTTCAAGTTCAAGCCTATTTATCTGGATACCTGGGAGAGATATCAAAAAGCAGTCAACTTGTAAAATTCTTATCATATTATGCGTAAAATTTTGTTAGTTGGCATCTTTTTGATATCTAATACAGTAACCGAGATAAATTGAGTCGAAGCACGGTACTTGCAATAATAGAAGCCCGCCCAATACCTTCACTTTGAGCTCAATTATCTCGGTTCCAGTGAAAGCTATCAGAAAGCGGTCAACAAACAAAATGCTGATCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGGTTTTCTGATTTCACC</pcr_primer_p1>
		<pcr_primer_p2>GAGCAGTTGTTACTAATGTGTAGG</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>TGAGGTTTTCTGATTTCACCCGATGGACAAAATTGAAACATTTCTAGTCCATTTACCATGGTGGACTAGGTTTCCAACAAAATTTTTTCAGGCCATCAGGGTGAATAGCCTAGAAATGACCTAATAATTACCTAGTGGGTTTTCTGGGCTTTCACCAAAGTGTCCCAGAAAACTCGTTTTGCGAAAGTTAGGTCACCTAGGCTGAGAAGTGTTCCCCGGTACTATATCTTCAAATTCAAAAAATTTTCGTTCACCAAACACGCCCAATGCAAAAAATGCCCTACACATTAGTAACAACTGCTC</canonical_amplicon>
		<polymorphic_amplicon>TGAGGTTTTCTGATTTCACCCGATGGACAAAATTGAAACATTTCTAGTCCATTTACCATGGTGGACTAGGTTTCCAACAAAATTTTTTCAGGCCATCAGGGTGAATAGCCTAGAAATGACCTAATAATTACCTAGTGGGTTTTCTGGGCTTTCACCAAAGTGTCCCAGAAAACTCGTTTTGCGAAAGTTAGGTCACCTAGGCTGAGAAGTGTTCCCCGGTACTATATCTTCAAATTCAAAAAATTTTSGTTCACCAAACACGCCCAATGCAAAAAATGCCCTACACATTAGTAACAACTGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26801</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>608136</contig_pos>
        <strand>+</strand>
        <context>AATGCAAAAA[A/G]TGCCCTACAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCTTCAAATTCAAAAAATTTTCGTTCACCAAACACGCCCAATGCAAAAA</left_flank>
        <right_flank>TGCCCTACACATTAGTAACAACTGCTCCCATCAATCCAGCCAAACTTTGG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCACGCACTTTGCATGAGCAGTCACATTTTTGGATTCATGGATGCACACGTAGTGCTCCTTTTTCTCGTTTTTCGTCATTTTGCGCTTGTTGATTCTGGAATTTTTATGAAGTTGTTTACCATGATGGCCTAGAAAACAACACATGCAAAAGTTAGGTCACCATGATGAGATGATCTAGAAAACCCGCCAGGTGTCTAATTGTTGGAAAAAACAGTATCTTTTGAGGTTTTCTGATTTCACCCGATGGACAAAATTGAAACATTTCTAGTCCATTTACCATGGTGGACTAGGTTTCCAACAAAATTTTTTCAGGCCATCAGGGTGAATAGCCTAGAAATGACCTAATAATTACCTAGTGGGTTTTCTGGGCTTTCACCAAAGTGTCCCAGAAAACTCGTTTTGCGAAAGTTAGGTCACCTAGGCTGAGAAGTGTTCCCCGGTACTATATCTTCAAATTCAAAAAATTTTCGTTCACCAAACACGCCCAATGCAAAAAATGCCCTACACATTAGTAACAACTGCTCCCATCAATCCAGCCAAACTTTGGTCCATCCAGTGTTTATACAAATCATCTCTAGCTTCATCAGATATGGTAACGATTGTTTTATTGCCATCATGACTGATTGTATTCACTTTTCGGTGCTCCACATCGTCATCCGGAACGTCTGCCACGTCTTCGTCGCGTATTATGAAGTCTAGTGTCTGCAACTTTCAAGTTCAAGCCTATTTATCTGGATACCTGGGAGAGATATCAAAAAGCAGTCAACTTGTAAAATTCTTATCATATTATGCGTAAAATTTTGTTAGTTGGCATCTTTTTGATATCTAATACAGTAACCGAGATAAATTGAGTCGAAGCACGGTACTTGCAATAATAGAAGCCCGCCCAATACCTTCACTTTGAGCTCAATTATCTCGGTTCCAGTGAAAGCTATCAGAAAGCGGTCAACAAACAAAATGCTGATCATAACATCAGCAATTTTTTATCAGTTGACAG</canonical>
            <polymorphic>AACCACGCACTTTGCATGAGCAGTCACATTTTTGGATTCATGGATGCACACGTAGTGCTCCTTTTTCTCGTTTTTCGTCATTTTGCGCTTGTTGATTCTGGAATTTTTATGAAGTTGTTTACCATGATGGCCTAGAAAACAACACATGCAAAAGTTAGGTCACCATGATGAGATGATCTAGAAAACCCGCCAGGTGTCTAATTGTTGGAAAAAACAGTATCTTTTGAGGTTTTCTGATTTCACCCGATGGACAAAATTGAAACATTTCTAGTCCATTTACCATGGTGGACTAGGTTTCCAACAAAATTTTTTCAGGCCATCAGGGTGAATAGCCTAGAAATGACCTAATAATTACCTAGTGGGTTTTCTGGGCTTTCACCAAAGTGTCCCAGAAAACTCGTTTTGCGAAAGTTAGGTCACCTAGGCTGAGAAGTGTTCCCCGGTACTATATCTTCAAATTCAAAAAATTTTCGTTCACCAAACACGCCCAATGCAAAAARTGCCCTACACATTAGTAACAACTGCTCCCATCAATCCAGCCAAACTTTGGTCCATCCAGTGTTTATACAAATCATCTCTAGCTTCATCAGATATGGTAACGATTGTTTTATTGCCATCATGACTGATTGTATTCACTTTTCGGTGCTCCACATCGTCATCCGGAACGTCTGCCACGTCTTCGTCGCGTATTATGAAGTCTAGTGTCTGCAACTTTCAAGTTCAAGCCTATTTATCTGGATACCTGGGAGAGATATCAAAAAGCAGTCAACTTGTAAAATTCTTATCATATTATGCGTAAAATTTTGTTAGTTGGCATCTTTTTGATATCTAATACAGTAACCGAGATAAATTGAGTCGAAGCACGGTACTTGCAATAATAGAAGCCCGCCCAATACCTTCACTTTGAGCTCAATTATCTCGGTTCCAGTGAAAGCTATCAGAAAGCGGTCAACAAACAAAATGCTGATCATAACATCAGCAATTTTTTATCAGTTGACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGTTCCCCGGTACTATATCT</pcr_primer_p1>
		<pcr_primer_p2>ACCGAAAAGTGAATACAATCAG</pcr_primer_p2>
		<pcr_amplicon_size>213</pcr_amplicon_size>
		<canonical_amplicon>AGTGTTCCCCGGTACTATATCTTCAAATTCAAAAAATTTTCGTTCACCAAACACGCCCAATGCAAAAAATGCCCTACACATTAGTAACAACTGCTCCCATCAATCCAGCCAAACTTTGGTCCATCCAGTGTTTATACAAATCATCTCTAGCTTCATCAGATATGGTAACGATTGTTTTATTGCCATCATGACTGATTGTATTCACTTTTCGGT</canonical_amplicon>
		<polymorphic_amplicon>AGTGTTCCCCGGTACTATATCTTCAAATTCAAAAAATTTTCGTTCACCAAACACGCCCAATGCAAAAARTGCCCTACACATTAGTAACAACTGCTCCCATCAATCCAGCCAAACTTTGGTCCATCCAGTGTTTATACAAATCATCTCTAGCTTCATCAGATATGGTAACGATTGTTTTATTGCCATCATGACTGATTGTATTCACTTTTCGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26802</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>608480</contig_pos>
        <strand></strand>
        <context>acagtaaccg[A/C]gataaattga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCGTAAAATTTTGTTAGTTGGCATCTTTTTGATATCTAATACAGTAACCG</left_flank>
        <right_flank>GATAAATTGAGTCGAAGCACGGTACTTGCAATAATAGAAGCCCGCCCAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAATAATTACCTAGTGGGTTTTCTGGGCTTTCACCAAAGTGTCCCAGAAAACTCGTTTTGCGAAAGTTAGGTCACCTAGGCTGAGAAGTGTTCCCCGGTACTATATCTTCAAATTCAAAAAATTTTCGTTCACCAAACACGCCCAATGCAAAAAATGCCCTACACATTAGTAACAACTGCTCCCATCAATCCAGCCAAACTTTGGTCCATCCAGTGTTTATACAAATCATCTCTAGCTTCATCAGATATGGTAACGATTGTTTTATTGCCATCATGACTGATTGTATTCACTTTTCGGTGCTCCACATCGTCATCCGGAACGTCTGCCACGTCTTCGTCGCGTATTATGAAGTCTAGTGTCTGCAACTTTCAAGTTCAAGCCTATTTATCTGGATACCTGGGAGAGATATCAAAAAGCAGTCAACTTGTAAAATTCTTATCATATTATGCGTAAAATTTTGTTAGTTGGCATCTTTTTGATATCTAATACAGTAACCGAGATAAATTGAGTCGAAGCACGGTACTTGCAATAATAGAAGCCCGCCCAATACCTTCACTTTGAGCTCAATTATCTCGGTTCCAGTGAAAGCTATCAGAAAGCGGTCAACAAACAAAATGCTGATCATAACATCAGCAATTTTTTATCAGTTGACAGGCTTCTGATATCTTCACAAAAAACCAAGATAAATGAGCGCAAAGTGTACATATAACGACCCACCTCATTGTGATCCTTCTTCATCTCATCAATCTTTGTCAAATTCACAAACGGCGCCAATTCTCTCGGTATCTTTCCACTTCTCACTTGTTCTATCAAGCCTTCACGAATCGCGTTCGGTTTTTTTGGTTTCGAAGTGGTGAACTCGATTTTTGGAATATTTTCCATCCATGGGAAATTTGGGATCAAAGTGGATTGAGAGGAATCGGAAGGAGATGGTGTTGGTTGTTCGCCGCGGGAAATTATCGATCCTGGAATCTATGAGGCTTAGATTTCGCGAATTT</canonical>
            <polymorphic>CTAATAATTACCTAGTGGGTTTTCTGGGCTTTCACCAAAGTGTCCCAGAAAACTCGTTTTGCGAAAGTTAGGTCACCTAGGCTGAGAAGTGTTCCCCGGTACTATATCTTCAAATTCAAAAAATTTTCGTTCACCAAACACGCCCAATGCAAAAAATGCCCTACACATTAGTAACAACTGCTCCCATCAATCCAGCCAAACTTTGGTCCATCCAGTGTTTATACAAATCATCTCTAGCTTCATCAGATATGGTAACGATTGTTTTATTGCCATCATGACTGATTGTATTCACTTTTCGGTGCTCCACATCGTCATCCGGAACGTCTGCCACGTCTTCGTCGCGTATTATGAAGTCTAGTGTCTGCAACTTTCAAGTTCAAGCCTATTTATCTGGATACCTGGGAGAGATATCAAAAAGCAGTCAACTTGTAAAATTCTTATCATATTATGCGTAAAATTTTGTTAGTTGGCATCTTTTTGATATCTAATACAGTAACCGMGATAAATTGAGTCGAAGCACGGTACTTGCAATAATAGAAGCCCGCCCAATACCTTCACTTTGAGCTCAATTATCTCGGTTCCAGTGAAAGCTATCAGAAAGCGGTCAACAAACAAAATGCTGATCATAACATCAGCAATTTTTTATCAGTTGACAGGCTTCTGATATCTTCACAAAAAACCAAGATAAATGAGCGCAAAGTGTACATATAACGACCCACCTCATTGTGATCCTTCTTCATCTCATCAATCTTTGTCAAATTCACAAACGGCGCCAATTCTCTCGGTATCTTTCCACTTCTCACTTGTTCTATCAAGCCTTCACGAATCGCGTTCGGTTTTTTTGGTTTCGAAGTGGTGAACTCGATTTTTGGAATATTTTCCATCCATGGGAAATTTGGGATCAAAGTGGATTGAGAGGAATCGGAAGGAGATGGTGTTGGTTGTTCGCCGCGGGAAATTATCGATCCTGGAATCTATGAGGCTTAGATTTCGCGAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCGTATTATGAAGTCTAGTGTC</pcr_primer_p1>
		<pcr_primer_p2>TGAGGTGGGTCGTTATATGT</pcr_primer_p2>
		<pcr_amplicon_size>384</pcr_amplicon_size>
		<canonical_amplicon>CGCGTATTATGAAGTCTAGTGTCTGCAACTTTCAAGTTCAAGCCTATTTATCTGGATACCTGGGAGAGATATCAAAAAGCAGTCAACTTGTAAAATTCTTATCATATTATGCGTAAAATTTTGTTAGTTGGCATCTTTTTGATATCTAATACAGTAACCGAGATAAATTGAGTCGAAGCACGGTACTTGCAATAATAGAAGCCCGCCCAATACCTTCACTTTGAGCTCAATTATCTCGGTTCCAGTGAAAGCTATCAGAAAGCGGTCAACAAACAAAATGCTGATCATAACATCAGCAATTTTTTATCAGTTGACAGGCTTCTGATATCTTCACAAAAAACCAAGATAAATGAGCGCAAAGTGTACATATAACGACCCACCTCA</canonical_amplicon>
		<polymorphic_amplicon>CGCGTATTATGAAGTCTAGTGTCTGCAACTTTCAAGTTCAAGCCTATTTATCTGGATACCTGGGAGAGATATCAAAAAGCAGTCAACTTGTAAAATTCTTATCATATTATGCGTAAAATTTTGTTAGTTGGCATCTTTTTGATATCTAATACAGTAACCGMGATAAATTGAGTCGAAGCACGGTACTTGCAATAATAGAAGCCCGCCCAATACCTTCACTTTGAGCTCAATTATCTCGGTTCCAGTGAAAGCTATCAGAAAGCGGTCAACAAACAAAATGCTGATCATAACATCAGCAATTTTTTATCAGTTGACAGGCTTCTGATATCTTCACAAAAAACCAAGATAAATGAGCGCAAAGTGTACATATAACGACCCACCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26803</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>608657</contig_pos>
        <strand></strand>
        <context>tcttcacaaa[A/G]aaccaagata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAACATCAGCAATTTTTTATCAGTTGACAGGCTTCTGATATCTTCACAAA</left_flank>
        <right_flank>AACCAAGATAAATGAGCGCAAAGTGTACATATAACGACCCACCTCATTGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGCTCCCATCAATCCAGCCAAACTTTGGTCCATCCAGTGTTTATACAAATCATCTCTAGCTTCATCAGATATGGTAACGATTGTTTTATTGCCATCATGACTGATTGTATTCACTTTTCGGTGCTCCACATCGTCATCCGGAACGTCTGCCACGTCTTCGTCGCGTATTATGAAGTCTAGTGTCTGCAACTTTCAAGTTCAAGCCTATTTATCTGGATACCTGGGAGAGATATCAAAAAGCAGTCAACTTGTAAAATTCTTATCATATTATGCGTAAAATTTTGTTAGTTGGCATCTTTTTGATATCTAATACAGTAACCGAGATAAATTGAGTCGAAGCACGGTACTTGCAATAATAGAAGCCCGCCCAATACCTTCACTTTGAGCTCAATTATCTCGGTTCCAGTGAAAGCTATCAGAAAGCGGTCAACAAACAAAATGCTGATCATAACATCAGCAATTTTTTATCAGTTGACAGGCTTCTGATATCTTCACAAAAAACCAAGATAAATGAGCGCAAAGTGTACATATAACGACCCACCTCATTGTGATCCTTCTTCATCTCATCAATCTTTGTCAAATTCACAAACGGCGCCAATTCTCTCGGTATCTTTCCACTTCTCACTTGTTCTATCAAGCCTTCACGAATCGCGTTCGGTTTTTTTGGTTTCGAAGTGGTGAACTCGATTTTTGGAATATTTTCCATCCATGGGAAATTTGGGATCAAAGTGGATTGAGAGGAATCGGAAGGAGATGGTGTTGGTTGTTCGCCGCGGGAAATTATCGATCCTGGAATCTATGAGGCTTAGATTTCGCGAATTTCAATTTCTGAGGTATTACTTGTTTGTTTTTTGTGTTGTTTCGAAGCTAGATTTTCTTGTTACAAATATCCGTAAATGCTCCAATAGAAAACACTATACATTTACTTTGAGCTCAATTATCTCGGTTCCTATAAGATATATCAAAAATTTACCAACTGATAAAACGTTGATGATATTA</canonical>
            <polymorphic>CTGCTCCCATCAATCCAGCCAAACTTTGGTCCATCCAGTGTTTATACAAATCATCTCTAGCTTCATCAGATATGGTAACGATTGTTTTATTGCCATCATGACTGATTGTATTCACTTTTCGGTGCTCCACATCGTCATCCGGAACGTCTGCCACGTCTTCGTCGCGTATTATGAAGTCTAGTGTCTGCAACTTTCAAGTTCAAGCCTATTTATCTGGATACCTGGGAGAGATATCAAAAAGCAGTCAACTTGTAAAATTCTTATCATATTATGCGTAAAATTTTGTTAGTTGGCATCTTTTTGATATCTAATACAGTAACCGAGATAAATTGAGTCGAAGCACGGTACTTGCAATAATAGAAGCCCGCCCAATACCTTCACTTTGAGCTCAATTATCTCGGTTCCAGTGAAAGCTATCAGAAAGCGGTCAACAAACAAAATGCTGATCATAACATCAGCAATTTTTTATCAGTTGACAGGCTTCTGATATCTTCACAAARAACCAAGATAAATGAGCGCAAAGTGTACATATAACGACCCACCTCATTGTGATCCTTCTTCATCTCATCAATCTTTGTCAAATTCACAAACGGCGCCAATTCTCTCGGTATCTTTCCACTTCTCACTTGTTCTATCAAGCCTTCACGAATCGCGTTCGGTTTTTTTGGTTTCGAAGTGGTGAACTCGATTTTTGGAATATTTTCCATCCATGGGAAATTTGGGATCAAAGTGGATTGAGAGGAATCGGAAGGAGATGGTGTTGGTTGTTCGCCGCGGGAAATTATCGATCCTGGAATCTATGAGGCTTAGATTTCGCGAATTTCAATTTCTGAGGTATTACTTGTTTGTTTTTTGTGTTGTTTCGAAGCTAGATTTTCTTGTTACAAATATCCGTAAATGCTCCAATAGAAAACACTATACATTTACTTTGAGCTCAATTATCTCGGTTCCTATAAGATATATCAAAAATTTACCAACTGATAAAACGTTGATGATATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCGTATTATGAAGTCTAGTGTC</pcr_primer_p1>
		<pcr_primer_p2>GAAGAAGGATCACAATGAGGT</pcr_primer_p2>
		<pcr_amplicon_size>399</pcr_amplicon_size>
		<canonical_amplicon>CGCGTATTATGAAGTCTAGTGTCTGCAACTTTCAAGTTCAAGCCTATTTATCTGGATACCTGGGAGAGATATCAAAAAGCAGTCAACTTGTAAAATTCTTATCATATTATGCGTAAAATTTTGTTAGTTGGCATCTTTTTGATATCTAATACAGTAACCGAGATAAATTGAGTCGAAGCACGGTACTTGCAATAATAGAAGCCCGCCCAATACCTTCACTTTGAGCTCAATTATCTCGGTTCCAGTGAAAGCTATCAGAAAGCGGTCAACAAACAAAATGCTGATCATAACATCAGCAATTTTTTATCAGTTGACAGGCTTCTGATATCTTCACAAAAAACCAAGATAAATGAGCGCAAAGTGTACATATAACGACCCACCTCATTGTGATCCTTCTTC</canonical_amplicon>
		<polymorphic_amplicon>CGCGTATTATGAAGTCTAGTGTCTGCAACTTTCAAGTTCAAGCCTATTTATCTGGATACCTGGGAGAGATATCAAAAAGCAGTCAACTTGTAAAATTCTTATCATATTATGCGTAAAATTTTGTTAGTTGGCATCTTTTTGATATCTAATACAGTAACCGAGATAAATTGAGTCGAAGCACGGTACTTGCAATAATAGAAGCCCGCCCAATACCTTCACTTTGAGCTCAATTATCTCGGTTCCAGTGAAAGCTATCAGAAAGCGGTCAACAAACAAAATGCTGATCATAACATCAGCAATTTTTTATCAGTTGACAGGCTTCTGATATCTTCACAAARAACCAAGATAAATGAGCGCAAAGTGTACATATAACGACCCACCTCATTGTGATCCTTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26804</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>627460</contig_pos>
        <strand>+</strand>
        <context>CCCCGAGGAG[G/T]CTCCAGCCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAG</left_flank>
        <right_flank>CTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTCCAGATTTTTCGATTGTATGATCTGTCGATTTCTGGTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATATGTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTCATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCACAAAAACGTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCAAGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAATAAAGCTACTGATAACAATATTGAAACCTATCAATTTCCCACTGTTTTTATTGTTTTATTTTCACTAAATTTTCCTCCAAATTCCCTCTATTTTCCCCTATTTTTGCCTGAATGTTTCCAATAAATTTCCCCCCACAGTAACCCGATTTCACGTGCCAAAAACGAATATAACAACTAAAAATATTTACAACAGGAGGGCTGCTCGCCGAGCACCTCACCTCCGGCTGTACAAATCTTCACACACTTTGACACCGGTGAAAAGTGGCAAATATTGGAAAAAATAGTTCGAAAAAACGAAACAAAAAAGGTGTCAAAAATCTCGGATTTGATGAAATTTACACCTTTTTCAACTGTTCGAAATTCAAATTTTTGAAATAAGAAATCTCGCTCTTTTGATAATTTCTTGGCTTTATCAGTAGAGCGCGATTTCTAAAGTTTGCTGCT</canonical>
            <polymorphic>AAATTCCAGATTTTTCGATTGTATGATCTGTCGATTTCTGGTACCTGACCGAAAAAGTTCAAAATTTCGAAAAAATATGTATAGTTTCAGGTCAAAGAAGCGTGTTGCATTTAGGTGCGATGAGCGGAAAAGTCATATAAAATCGTCACGTACACAGTTGGTTTTTTTGGTTTTTCAAGACCACAAAAACGTTTAAAAATAAGGTCCCAAAACGAAAACTACAGTAACCTGGACAAAAAAAAATGAAATAATGCATTCCTGAAATTTCTTCCAAACTAATATTTAAGGAACATTTTCAAGCTCCGAGAAGACAAAAAATTTTGAAATTCCAGATTTTTCTCCACCTGCTCTTCCTCCAGGTCAAGCAGCTGATAATTCAAAAACTCCAGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGKCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAATAAAGCTACTGATAACAATATTGAAACCTATCAATTTCCCACTGTTTTTATTGTTTTATTTTCACTAAATTTTCCTCCAAATTCCCTCTATTTTCCCCTATTTTTGCCTGAATGTTTCCAATAAATTTCCCCCCACAGTAACCCGATTTCACGTGCCAAAAACGAATATAACAACTAAAAATATTTACAACAGGAGGGCTGCTCGCCGAGCACCTCACCTCCGGCTGTACAAATCTTCACACACTTTGACACCGGTGAAAAGTGGCAAATATTGGAAAAAATAGTTCGAAAAAACGAAACAAAAAAGGTGTCAAAAATCTCGGATTTGATGAAATTTACACCTTTTTCAACTGTTCGAAATTCAAATTTTTGAAATAAGAAATCTCGCTCTTTTGATAATTTCTTGGCTTTATCAGTAGAGCGCGATTTCTAAAGTTTGCTGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATCATCACATCACCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TGGAGGAAAATTTAGTGAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGTCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAATAAAGCTACTGATAACAATATTGAAACCTATCAATTTCCCACTGTTTTTATTGTTTTATTTTCACTAAATTTTCCTCCA</canonical_amplicon>
		<polymorphic_amplicon>AGATCATCACATCACCTGAAAATATCAGTGGACCTGAAAAATGAAATCATTTGATCTGAAAAAAGGGGCGGGGATTAAAATGAGTGGGTTTTTCAGGTCAACCCCCGAGGAGKCTCCAGCCGGTCTGACCGCTCAACTTAAAAAATTTTTATTTCATTATTTTTGCGAATAAAGCTACTGATAACAATATTGAAACCTATCAATTTCCCACTGTTTTTATTGTTTTATTTTCACTAAATTTTCCTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26805</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>628377</contig_pos>
        <strand>+</strand>
        <context>AACACAAAAT[A/C]TATCATTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAAT</left_flank>
        <right_flank>TATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACT</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAATTTTTGAAATAAGAAATCTCGCTCTTTTGATAATTTCTTGGCTTTATCAGTAGAGCGCGATTTCTAAAGTTTGCTGCTACCTGAAAAAAACAGGAAAAAATGTCTAAAGTGGCGAATTCGAAGAAATTCAGATCAAAATTTTAGAGCTATTTAATGAATTTTTGGCTTTTTATCAGTAGAGCGCAACTTCTAAACTTTAAATTTTTGAAAAAAAAGCTAGATTTGGTGTGAAAAACCCGATTTTTTCGCAATAAAACTACAAAAAATTGTTTAAAAAACCGAGAAATAGCATCGAAAAACAAATTTTCCTGTACGAGGTGTAAGAGCGAGAGTTTTCTAGTCCGCGAACTTCAATGTTTTTTCTGAAAAAAATCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTTTAATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAAAA</canonical>
            <polymorphic>TCAAATTTTTGAAATAAGAAATCTCGCTCTTTTGATAATTTCTTGGCTTTATCAGTAGAGCGCGATTTCTAAAGTTTGCTGCTACCTGAAAAAAACAGGAAAAAATGTCTAAAGTGGCGAATTCGAAGAAATTCAGATCAAAATTTTAGAGCTATTTAATGAATTTTTGGCTTTTTATCAGTAGAGCGCAACTTCTAAACTTTAAATTTTTGAAAAAAAAGCTAGATTTGGTGTGAAAAACCCGATTTTTTCGCAATAAAACTACAAAAAATTGTTTAAAAAACCGAGAAATAGCATCGAAAAACAAATTTTCCTGTACGAGGTGTAAGAGCGAGAGTTTTCTAGTCCGCGAACTTCAATGTTTTTTCTGAAAAAAATCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATMTATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTTTAATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTTCCTGTACGAGGTGTA</pcr_primer_p1>
		<pcr_primer_p2>TTATCAGTAGAGCGCAATTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTTTCCTGTACGAGGTGTAAGAGCGAGAGTTTTCTAGTCCGCGAACTTCAATGTTTTTTCTGAAAAAAATCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAA</canonical_amplicon>
		<polymorphic_amplicon>AAATTTTCCTGTACGAGGTGTAAGAGCGAGAGTTTTCTAGTCCGCGAACTTCAATGTTTTTTCTGAAAAAAATCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATMTATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26806</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>628390</contig_pos>
        <strand>+</strand>
        <context>TCATTTTTWW[A/T]AMATTAGCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTT</left_flank>
        <right_flank>AAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAGAAATCTCGCTCTTTTGATAATTTCTTGGCTTTATCAGTAGAGCGCGATTTCTAAAGTTTGCTGCTACCTGAAAAAAACAGGAAAAAATGTCTAAAGTGGCGAATTCGAAGAAATTCAGATCAAAATTTTAGAGCTATTTAATGAATTTTTGGCTTTTTATCAGTAGAGCGCAACTTCTAAACTTTAAATTTTTGAAAAAAAAGCTAGATTTGGTGTGAAAAACCCGATTTTTTCGCAATAAAACTACAAAAAATTGTTTAAAAAACCGAGAAATAGCATCGAAAAACAAATTTTCCTGTACGAGGTGTAAGAGCGAGAGTTTTCTAGTCCGCGAACTTCAATGTTTTTTCTGAAAAAAATCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTTTAATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAAAATCGGTCAAATATA</canonical>
            <polymorphic>ATAAGAAATCTCGCTCTTTTGATAATTTCTTGGCTTTATCAGTAGAGCGCGATTTCTAAAGTTTGCTGCTACCTGAAAAAAACAGGAAAAAATGTCTAAAGTGGCGAATTCGAAGAAATTCAGATCAAAATTTTAGAGCTATTTAATGAATTTTTGGCTTTTTATCAGTAGAGCGCAACTTCTAAACTTTAAATTTTTGAAAAAAAAGCTAGATTTGGTGTGAAAAACCCGATTTTTTCGCAATAAAACTACAAAAAATTGTTTAAAAAACCGAGAAATAGCATCGAAAAACAAATTTTCCTGTACGAGGTGTAAGAGCGAGAGTTTTCTAGTCCGCGAACTTCAATGTTTTTTCTGAAAAAAATCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTTWAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTTTAATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAAAATCGGTCAAATATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>398 236 190 78 74 13 11</canonical_bands>
                <polymorphic_bands>398 314 190 74 13 11</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>209 169 143 89 79 78 74 46 24 22 22 21 13 11</canonical_bands>
                <polymorphic_bands>209 169 143 102 89 79 74 46 22 22 21 13 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTCTGGAATCAAATCCTAAAT</pcr_primer_p1>
		<pcr_primer_p2>CGACGAAATTTAAACCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCG</canonical_amplicon>
		<polymorphic_amplicon>TCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTTWAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26807</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>628392</contig_pos>
        <strand>+</strand>
        <context>ATTTTTWWWA[A/C]ATTAGCTAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTTTA</left_flank>
        <right_flank>ATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAAATCTCGCTCTTTTGATAATTTCTTGGCTTTATCAGTAGAGCGCGATTTCTAAAGTTTGCTGCTACCTGAAAAAAACAGGAAAAAATGTCTAAAGTGGCGAATTCGAAGAAATTCAGATCAAAATTTTAGAGCTATTTAATGAATTTTTGGCTTTTTATCAGTAGAGCGCAACTTCTAAACTTTAAATTTTTGAAAAAAAAGCTAGATTTGGTGTGAAAAACCCGATTTTTTCGCAATAAAACTACAAAAAATTGTTTAAAAAACCGAGAAATAGCATCGAAAAACAAATTTTCCTGTACGAGGTGTAAGAGCGAGAGTTTTCTAGTCCGCGAACTTCAATGTTTTTTCTGAAAAAAATCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTTTAATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAAAATCGGTCAAATATAAA</canonical>
            <polymorphic>AAGAAATCTCGCTCTTTTGATAATTTCTTGGCTTTATCAGTAGAGCGCGATTTCTAAAGTTTGCTGCTACCTGAAAAAAACAGGAAAAAATGTCTAAAGTGGCGAATTCGAAGAAATTCAGATCAAAATTTTAGAGCTATTTAATGAATTTTTGGCTTTTTATCAGTAGAGCGCAACTTCTAAACTTTAAATTTTTGAAAAAAAAGCTAGATTTGGTGTGAAAAACCCGATTTTTTCGCAATAAAACTACAAAAAATTGTTTAAAAAACCGAGAAATAGCATCGAAAAACAAATTTTCCTGTACGAGGTGTAAGAGCGAGAGTTTTCTAGTCCGCGAACTTCAATGTTTTTTCTGAAAAAAATCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTTTAMATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTTTAATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAAAATCGGTCAAATATAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>400 236 188 78 74 13 11</canonical_bands>
                <polymorphic_bands>400 314 188 74 13 11</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>211 169 141 89 79 78 74 46 24 22 22 21 13 11</canonical_bands>
                <polymorphic_bands>211 169 141 102 89 79 74 46 22 22 21 13 11</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>184 91 83 71 65 55 54 52 52 43 42 37 26 25 22 21 20 13 12 12 10 10</canonical_bands>
                <polymorphic_bands>184 91 83 74 71 65 55 54 52 43 42 37 26 25 21 20 13 12 12 10 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTCTGGAATCAAATCCTAAAT</pcr_primer_p1>
		<pcr_primer_p2>CGACGAAATTTAAACCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCG</canonical_amplicon>
		<polymorphic_amplicon>TCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTTTAMATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26808</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>628530</contig_pos>
        <strand>+</strand>
        <context>CTCTACCGAG[A/G]AAAAAAAGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAG</left_flank>
        <right_flank>AAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTAATGAATTTTTGGCTTTTTATCAGTAGAGCGCAACTTCTAAACTTTAAATTTTTGAAAAAAAAGCTAGATTTGGTGTGAAAAACCCGATTTTTTCGCAATAAAACTACAAAAAATTGTTTAAAAAACCGAGAAATAGCATCGAAAAACAAATTTTCCTGTACGAGGTGTAAGAGCGAGAGTTTTCTAGTCCGCGAACTTCAATGTTTTTTCTGAAAAAAATCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTTTAATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAAAATCGGTCAAATATAAATTTTTGCACTTTCTCTAGATTTTGCGTGTTTTTCTTATTATTTATCTCATGACTATCGTGCCGCCTTCCTATATATCATCAGTCGACCGCTCAGCTACCGTAGCTCAGCTGGTAGCAACGTGGCACCTCCAAGATTTG</canonical>
            <polymorphic>ATTTAATGAATTTTTGGCTTTTTATCAGTAGAGCGCAACTTCTAAACTTTAAATTTTTGAAAAAAAAGCTAGATTTGGTGTGAAAAACCCGATTTTTTCGCAATAAAACTACAAAAAATTGTTTAAAAAACCGAGAAATAGCATCGAAAAACAAATTTTCCTGTACGAGGTGTAAGAGCGAGAGTTTTCTAGTCCGCGAACTTCAATGTTTTTTCTGAAAAAAATCTTCTGGAATCAAATCCTAAATTCGCGTACTAAAAAACTCCCGCTCTTCCATCAAATGCCTTTTCATTAAAAATTTTTTTCCGTAATTTTAATACGAATATTCGGTTTTTTAACACAAAATATATCATTTTTTTTAAATTAGCTAGAAATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGRAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTTTAATAGATTGAGTTTTACTTATTAAAACATCCTGGTCTTGGTTTCCTCGAATTTTAGTTATCCGTCTTTTTTTGGCCTGGCCTTGGTCAACTATTGGGACAGGCAAGACTGAGCTGGGTTACTGTAGGCCAACAATCCAAGACCTTGTCCTAAACTTTTTTTAGCCATCTCTATTATCATTGTCTGGCATTTCATTATTTTGTCGTCCAAATCGAAAATCGGTCAAATATAAATTTTTGCACTTTCTCTAGATTTTGCGTGTTTTTCTTATTATTTATCTCATGACTATCGTGCCGCCTTCCTATATATCATCAGTCGACCGCTCAGCTACCGTAGCTCAGCTGGTAGCAACGTGGCACCTCCAAGATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCATTTAGAAATTGCGCTCTA</pcr_primer_p1>
		<pcr_primer_p2>AAAATTTTTGGGTTTTATCAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGAAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTT</canonical_amplicon>
		<polymorphic_amplicon>ATCATTTAGAAATTGCGCTCTACTGATAAACCAAAAAATTATCAGTGGAGCGAGTTTTTCTCTTTAAAATAGTTTTAAAATTTTGGTTTAAATTTCGTCGAATTCGAGATGAGATACTCTACCGAGRAAAAAAAGAGTCGAAAAGTTTGGTCTCGATTTTGTCGATTTTGAAATTTTTAACGTCTTTTTTCGATTCAATTCTCAAAAATCAGTAAACCTTAGAAATCGCGCTCTACTGATAAAACCCAAAAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26809</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>632583</contig_pos>
        <strand></strand>
        <context>attatgataa[C/G]cattttatca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAA</left_flank>
        <right_flank>CATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCACCTACCTACAGCATGTTCGTGGTCTTGTTTTTGACAGCTGTACCGTAACCCATAAGCACATTTTCTCTTTGAGCTCAATTACAGCGGTTTCTATAAGAGATATAAAAAAACTGTCAACTGACAAAATATTGGTGATATTATGACAAAGAATGTAGCAGTTGACAGAGTTTGATTATCTCTTATGGGTATCGAGATAATTGATCGCAAAGTTAGTACCAGTAGGTTGCTCCATTCATCCCGGAACAGTTGAATCTAGGCAAACCGAGAAAAGATTTGTTCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTTCTAGCTTCCAAAAATAACGAGGCACACCCTATCACCCACTAAAACCCGAAATCTACGTCAACATTCGTCAACGCGCGGGAAGTAAGTCGGATTAGCGAGTTGACATGGAATCGGACATATCCAGATATTCTGATGATATCTGTCAATTCAAGTAGATATGTTTCTTGGTTGTCACCTGCTGGATGTTCTTTTTTCGTGTGGAATCCAGAAAATTTTTCGTAGTAAATTTTGCCAATTTTTTAGTCGTCAGTTATTTTCACCTGCCCTTTGTCAGTTGTTAAATCGATGTAGATGTTGGTAGGGGGAAGTTTTGGTTTTGTCTGCAAAAGTTAATTATAAGTCTTGTTAAGCTAATTGCGTCTAAGAGCCAATAAGATCGTTCTGAC</canonical>
            <polymorphic>CCACCTACCTACAGCATGTTCGTGGTCTTGTTTTTGACAGCTGTACCGTAACCCATAAGCACATTTTCTCTTTGAGCTCAATTACAGCGGTTTCTATAAGAGATATAAAAAAACTGTCAACTGACAAAATATTGGTGATATTATGACAAAGAATGTAGCAGTTGACAGAGTTTGATTATCTCTTATGGGTATCGAGATAATTGATCGCAAAGTTAGTACCAGTAGGTTGCTCCATTCATCCCGGAACAGTTGAATCTAGGCAAACCGAGAAAAGATTTGTTCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAASCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTTCTAGCTTCCAAAAATAACGAGGCACACCCTATCACCCACTAAAACCCGAAATCTACGTCAACATTCGTCAACGCGCGGGAAGTAAGTCGGATTAGCGAGTTGACATGGAATCGGACATATCCAGATATTCTGATGATATCTGTCAATTCAAGTAGATATGTTTCTTGGTTGTCACCTGCTGGATGTTCTTTTTTCGTGTGGAATCCAGAAAATTTTTCGTAGTAAATTTTGCCAATTTTTTAGTCGTCAGTTATTTTCACCTGCCCTTTGTCAGTTGTTAAATCGATGTAGATGTTGGTAGGGGGAAGTTTTGGTTTTGTCTGCAAAAGTTAATTATAAGTCTTGTTAAGCTAATTGCGTCTAAGAGCCAATAAGATCGTTCTGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>XcmI</enzyme>
                </isoschizomers>
                <canonical_bands>507 493</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCGTAGGAATACCAACAAAT</pcr_primer_p1>
		<pcr_primer_p2>AATTCGTGACCAAGGATTTAG</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>TCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATT</canonical_amplicon>
		<polymorphic_amplicon>TCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAASCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26810</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>632625</contig_pos>
        <strand></strand>
        <context>taggaaatga[T/G]atgaattgAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGA</left_flank>
        <right_flank>ATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACCGTAACCCATAAGCACATTTTCTCTTTGAGCTCAATTACAGCGGTTTCTATAAGAGATATAAAAAAACTGTCAACTGACAAAATATTGGTGATATTATGACAAAGAATGTAGCAGTTGACAGAGTTTGATTATCTCTTATGGGTATCGAGATAATTGATCGCAAAGTTAGTACCAGTAGGTTGCTCCATTCATCCCGGAACAGTTGAATCTAGGCAAACCGAGAAAAGATTTGTTCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTTCTAGCTTCCAAAAATAACGAGGCACACCCTATCACCCACTAAAACCCGAAATCTACGTCAACATTCGTCAACGCGCGGGAAGTAAGTCGGATTAGCGAGTTGACATGGAATCGGACATATCCAGATATTCTGATGATATCTGTCAATTCAAGTAGATATGTTTCTTGGTTGTCACCTGCTGGATGTTCTTTTTTCGTGTGGAATCCAGAAAATTTTTCGTAGTAAATTTTGCCAATTTTTTAGTCGTCAGTTATTTTCACCTGCCCTTTGTCAGTTGTTAAATCGATGTAGATGTTGGTAGGGGGAAGTTTTGGTTTTGTCTGCAAAAGTTAATTATAAGTCTTGTTAAGCTAATTGCGTCTAAGAGCCAATAAGATCGTTCTGACATACTGTAAAAACTGTCATGGAAAGATCCTCACGCTGTCAAC</canonical>
            <polymorphic>GTACCGTAACCCATAAGCACATTTTCTCTTTGAGCTCAATTACAGCGGTTTCTATAAGAGATATAAAAAAACTGTCAACTGACAAAATATTGGTGATATTATGACAAAGAATGTAGCAGTTGACAGAGTTTGATTATCTCTTATGGGTATCGAGATAATTGATCGCAAAGTTAGTACCAGTAGGTTGCTCCATTCATCCCGGAACAGTTGAATCTAGGCAAACCGAGAAAAGATTTGTTCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGAKATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTTCTAGCTTCCAAAAATAACGAGGCACACCCTATCACCCACTAAAACCCGAAATCTACGTCAACATTCGTCAACGCGCGGGAAGTAAGTCGGATTAGCGAGTTGACATGGAATCGGACATATCCAGATATTCTGATGATATCTGTCAATTCAAGTAGATATGTTTCTTGGTTGTCACCTGCTGGATGTTCTTTTTTCGTGTGGAATCCAGAAAATTTTTCGTAGTAAATTTTGCCAATTTTTTAGTCGTCAGTTATTTTCACCTGCCCTTTGTCAGTTGTTAAATCGATGTAGATGTTGGTAGGGGGAAGTTTTGGTTTTGTCTGCAAAAGTTAATTATAAGTCTTGTTAAGCTAATTGCGTCTAAGAGCCAATAAGATCGTTCTGACATACTGTAAAAACTGTCATGGAAAGATCCTCACGCTGTCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCGTAGGAATACCAACAAAT</pcr_primer_p1>
		<pcr_primer_p2>AATTCGTGACCAAGGATTTAG</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>TCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATT</canonical_amplicon>
		<polymorphic_amplicon>TCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGAKATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26811</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>632648</contig_pos>
        <strand>+</strand>
        <context>GGAACGGACY[C/T]CCCAACTTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACT</left_flank>
        <right_flank>CCCAACTTAAGTGCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTCTTTGAGCTCAATTACAGCGGTTTCTATAAGAGATATAAAAAAACTGTCAACTGACAAAATATTGGTGATATTATGACAAAGAATGTAGCAGTTGACAGAGTTTGATTATCTCTTATGGGTATCGAGATAATTGATCGCAAAGTTAGTACCAGTAGGTTGCTCCATTCATCCCGGAACAGTTGAATCTAGGCAAACCGAGAAAAGATTTGTTCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTTCTAGCTTCCAAAAATAACGAGGCACACCCTATCACCCACTAAAACCCGAAATCTACGTCAACATTCGTCAACGCGCGGGAAGTAAGTCGGATTAGCGAGTTGACATGGAATCGGACATATCCAGATATTCTGATGATATCTGTCAATTCAAGTAGATATGTTTCTTGGTTGTCACCTGCTGGATGTTCTTTTTTCGTGTGGAATCCAGAAAATTTTTCGTAGTAAATTTTGCCAATTTTTTAGTCGTCAGTTATTTTCACCTGCCCTTTGTCAGTTGTTAAATCGATGTAGATGTTGGTAGGGGGAAGTTTTGGTTTTGTCTGCAAAAGTTAATTATAAGTCTTGTTAAGCTAATTGCGTCTAAGAGCCAATAAGATCGTTCTGACATACTGTAAAAACTGTCATGGAAAGATCCTCACGCTGTCAACTGAAGTTTGAGCTCAATTGTCTC</canonical>
            <polymorphic>TTCTCTTTGAGCTCAATTACAGCGGTTTCTATAAGAGATATAAAAAAACTGTCAACTGACAAAATATTGGTGATATTATGACAAAGAATGTAGCAGTTGACAGAGTTTGATTATCTCTTATGGGTATCGAGATAATTGATCGCAAAGTTAGTACCAGTAGGTTGCTCCATTCATCCCGGAACAGTTGAATCTAGGCAAACCGAGAAAAGATTTGTTCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTYCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTTCTAGCTTCCAAAAATAACGAGGCACACCCTATCACCCACTAAAACCCGAAATCTACGTCAACATTCGTCAACGCGCGGGAAGTAAGTCGGATTAGCGAGTTGACATGGAATCGGACATATCCAGATATTCTGATGATATCTGTCAATTCAAGTAGATATGTTTCTTGGTTGTCACCTGCTGGATGTTCTTTTTTCGTGTGGAATCCAGAAAATTTTTCGTAGTAAATTTTGCCAATTTTTTAGTCGTCAGTTATTTTCACCTGCCCTTTGTCAGTTGTTAAATCGATGTAGATGTTGGTAGGGGGAAGTTTTGGTTTTGTCTGCAAAAGTTAATTATAAGTCTTGTTAAGCTAATTGCGTCTAAGAGCCAATAAGATCGTTCTGACATACTGTAAAAACTGTCATGGAAAGATCCTCACGCTGTCAACTGAAGTTTGAGCTCAATTGTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>309 250 187 161 93</canonical_bands>
                <polymorphic_bands>470 250 187 93</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCGTAGGAATACCAACAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGCTAGAAGGATGGACTAGGA</pcr_primer_p2>
		<pcr_amplicon_size>340</pcr_amplicon_size>
		<canonical_amplicon>TCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTCCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTTCTAGCT</canonical_amplicon>
		<polymorphic_amplicon>TCCGTAGGAATACCAACAAATTTTTTAGAAATCTTCAAATACACATTAAAAAAGATATTTATGACTTCTTTAAATCGGACAATCCGATTTTAACACAAATGGAAATATACCTAATTTCAAAGCTTTGTGGGTTCGTCTGCTTTAACTCAATGCGTCTCGGTTCCTGTAAGCGATAGCAAAGATATTTCAACTAGAAACTTGTTTTTGATATTATGATAACCATTTTATCAATGGACCTTTTTTATCTTTCATAGGAAATGATATGAATTGAAAGGGAACGGACTYCCCAACTTAAGTGCCTAAATCCTTGGTCACGAATTCCTAGTCCATCCTTCTAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26812</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>637472</contig_pos>
        <strand></strand>
        <context>GATGGTGGTG[C/A]TCAGCGCTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GCTCTCCGCCGGGAGTCCACCAAAGGGAAGCTTGTCTCCAGATGGTGGTG</left_flank>
        <right_flank>TCAGCGCTTCTTCAGCCAAGGAAAGCGGATTCCAAAAGGTAAGCCCCGGG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTCCTGTATGGATAACATGAAGATGAATATATTTATTTGGATTTCATTTCAAATGTGAATGTGACTCTTGAGATCTCACGTCTTCCGAATTCTTCCAATTCTGAAATGAAGGACTCCCATTTCTAGTTCTACTCTTCTAGGGTTTCTAGGTCATTGATAAGGTGTGATCTCAGAGATAGAAGTCTTCACGTCACCCCTTTGGGACCCTCTAGACCATCTTGTGATGATTCTGGTGTCTAGACACTAATTGTTATGGCTCCACCTACATGAAAACGTGCATAGTGTCTTTGCTTTTAAACGCTAACAATCCAATTCAGTTATTATTCTTCTTGTTTTCTGACAGATACCCCTCCTAGTGATCCTCACAGTACTCCAACTTCCAGAAAAAATGCTCTCCAATTCCTCATCCTCCTCATCCAACTCTTCATCCAACGACTCGTCTTCATCGCTCTCCGCCGGGAGTCCACCAAAGGGAAGCTTGTCTCCAGATGGTGGTGCTCAGCGCTTCTTCAGCCAAGGAAAGCGGATTCCAAAAGGTAAGCCCCGGGTAAAAAAGGGGTGGGTTCTTTTAAGCAGATGGAGACAGAGCAAGGCTGTAGAGAGCAGAACCGGTCGCAGCCCGGGTCGTGGGGGGGGGGGGGTACCGTGGAGCAAGTTGTCAATTCATTCAGGATTCAAGGACAGTAGGATTCTAGGATTTCAGGATTCTAGGATTCTAGGATTCTAGAATTCTAGGTTTCTAAGATACTAGGGTTCTGGGATCCATGGATTCTAGGATTCTATAATTCTATGGTTCTAGGATTCTAGGATTCTAGGGTTCTAGGATACTAGGATACTAGGGTACTAGGATACTAGGATTCTAGGATTCTTTAGGATTCTAAGATTTCGTTCTTGAGATACTTCTAGGGCCGCCAGGCCACCGTATCCCACAAGTACCGTAACAAAAGAGTCGCGGTCGTGTTTTCAATTGCCTTGCTAGCAGACATCAGCTTGAAATA</canonical>
            <polymorphic>AATTCCTGTATGGATAACATGAAGATGAATATATTTATTTGGATTTCATTTCAAATGTGAATGTGACTCTTGAGATCTCACGTCTTCCGAATTCTTCCAATTCTGAAATGAAGGACTCCCATTTCTAGTTCTACTCTTCTAGGGTTTCTAGGTCATTGATAAGGTGTGATCTCAGAGATAGAAGTCTTCACGTCACCCCTTTGGGACCCTCTAGACCATCTTGTGATGATTCTGGTGTCTAGACACTAATTGTTATGGCTCCACCTACATGAAAACGTGCATAGTGTCTTTGCTTTTAAACGCTAACAATCCAATTCAGTTATTATTCTTCTTGTTTTCTGACAGATACCCCTCCTAGTGATCCTCACAGTACTCCAACTTCCAGAAAAAATGCTCTCCAATTCCTCATCCTCCTCATCCAACTCTTCATCCAACGACTCGTCTTCATCGCTCTCCGCCGGGAGTCCACCAAAGGGAAGCTTGTCTCCAGATGGTGGTGMTCAGCGCTTCTTCAGCCAAGGAAAGCGGATTCCAAAAGGTAAGCCCCGGGTAAAAAAGGGGTGGGTTCTTTTAAGCAGATGGAGACAGAGCAAGGCTGTAGAGAGCAGAACCGGTCGCAGCCCGGGTCGTGGGGGGGGGGGGGTACCGTGGAGCAAGTTGTCAATTCATTCAGGATTCAAGGACAGTAGGATTCTAGGATTTCAGGATTCTAGGATTCTAGGATTCTAGAATTCTAGGTTTCTAAGATACTAGGGTTCTGGGATCCATGGATTCTAGGATTCTATAATTCTATGGTTCTAGGATTCTAGGATTCTAGGGTTCTAGGATACTAGGATACTAGGGTACTAGGATACTAGGATTCTAGGATTCTTTAGGATTCTAAGATTTCGTTCTTGAGATACTTCTAGGGCCGCCAGGCCACCGTATCCCACAAGTACCGTAACAAAAGAGTCGCGGTCGTGTTTTCAATTGCCTTGCTAGCAGACATCAGCTTGAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCTNAGC</site>
                <isoschizomers>
                    <enzyme>BlpI</enzyme>
                    <enzyme>Bpu1102I</enzyme>
                    <enzyme>Bsp1720I</enzyme>
                    <enzyme>CelII</enzyme>
                    <enzyme>EspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>329 242 171 138 120</canonical_bands>
                <polymorphic_bands>571 171 138 120</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACAGATACCCCTCCTAGTGAT</pcr_primer_p1>
		<pcr_primer_p2>GTCTCCATCTGCTTAAAAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GACAGATACCCCTCCTAGTGATCCTCACAGTACTCCAACTTCCAGAAAAAATGCTCTCCAATTCCTCATCCTCCTCATCCAACTCTTCATCCAACGACTCGTCTTCATCGCTCTCCGCCGGGAGTCCACCAAAGGGAAGCTTGTCTCCAGATGGTGGTGCTCAGCGCTTCTTCAGCCAAGGAAAGCGGATTCCAAAAGGTAAGCCCCGGGTAAAAAAGGGGTGGGTTCTTTTAAGCAGATGGAGAC</canonical_amplicon>
		<polymorphic_amplicon>GACAGATACCCCTCCTAGTGATCCTCACAGTACTCCAACTTCCAGAAAAAATGCTCTCCAATTCCTCATCCTCCTCATCCAACTCTTCATCCAACGACTCGTCTTCATCGCTCTCCGCCGGGAGTCCACCAAAGGGAAGCTTGTCTCCAGATGGTGGTGMTCAGCGCTTCTTCAGCCAAGGAAAGCGGATTCCAAAAGGTAAGCCCCGGGTAAAAAAGGGGTGGGTTCTTTTAAGCAGATGGAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26813</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>657598</contig_pos>
        <strand>+</strand>
        <context>ACCAGAGATA[A/G]TAMACAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCTGAACAAGTCCAAAGTAGAAACAACACTCCCAGTTGACCAGAGATA</left_flank>
        <right_flank>TACACAATTTGGGGTAAATTTCCAATTAGAGGAAGAGAAACTGGTCCAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATATTAACTTATGAGAATTGTGTGAATTCGGAAATTCAAGGCTCACATACTGATTCCATGAATAAACTAGGGTATGACATACCTTGCATTCAATTCCTCAATAATTTTCAACTCCATGACATCCTTCCCGACGCCCATGTTTCTGAACGTTTGCAATGCGAATCTCCTCATCTCTTGCCAATGATCGCCGTTTGTTGATAGCACTCCTTGATCTTCTAAACAAGCAGGTGTTATAGTTTCTACTACAGTAATCCTAACTTTTGATTTCTTGGAACAGGGGAGCATGGAACTTGTCTGCATATTTGTTGCCATTTTTCACAAACACTTCATGAGCAGTTTCATAGTCGACAATACTCACATGAGGGATTGGACCAACCCACAAGGTGAAAATTTTTCCGTAGCGCTAAAAAACAATTTTAGAATAAGATCTTCAGGTTAAGCTTACTTTTCTGAACAAGTCCAAAGTAGAAACAACACTCCCAGTTGACCAGAGATAATACACAATTTGGGGTAAATTTCCAATTAGAGGAAGAGAAACTGGTCCAGGTGGAAGACGGGACACTTTCTGGTATTGTCTTACGACCAACCAGGTGAGAAAGAAAGAAATTATCAAAACGAAGAACATTTTTCAAATTTAACGTCTTATCTGTTGGTTTATATAGAAGGTTAAAATCGTGTCCGTCGATCACATCTTATCAGGTGTTGGGGGCAACAAAGGCTTTATTCGCTACAGGAATCACAAAGTTGATCGAAAGAACACAAAATATTTAATTTGGATTGAAAGTGATCTCAAATTTTTGATTGGAGAAAAATCCATTTCCAAAACATAAAATTTCCACTCTTTGCATTTTTCGTACCATTTTTCAACCAAAATAGTTTAATTTTCATGTATTATACTAATTATACTCCTTTGCAGATTTTTTTATTGAGTTTACCTTTTTCAAAAACTTTTTTAGCCCGGCGGGCCTGGGTTCTCCAAATTTGAAAAAATTTTGAA</canonical>
            <polymorphic>TTTATATTAACTTATGAGAATTGTGTGAATTCGGAAATTCAAGGCTCACATACTGATTCCATGAATAAACTAGGGTATGACATACCTTGCATTCAATTCCTCAATAATTTTCAACTCCATGACATCCTTCCCGACGCCCATGTTTCTGAACGTTTGCAATGCGAATCTCCTCATCTCTTGCCAATGATCGCCGTTTGTTGATAGCACTCCTTGATCTTCTAAACAAGCAGGTGTTATAGTTTCTACTACAGTAATCCTAACTTTTGATTTCTTGGAACAGGGGAGCATGGAACTTGTCTGCATATTTGTTGCCATTTTTCACAAACACTTCATGAGCAGTTTCATAGTCGACAATACTCACATGAGGGATTGGACCAACCCACAAGGTGAAAATTTTTCCGTAGCGCTAAAAAACAATTTTAGAATAAGATCTTCAGGTTAAGCTTACTTTTCTGAACAAGTCCAAAGTAGAAACAACACTCCCAGTTGACCAGAGATARTACACAATTTGGGGTAAATTTCCAATTAGAGGAAGAGAAACTGGTCCAGGTGGAAGACGGGACACTTTCTGGTATTGTCTTACGACCAACCAGGTGAGAAAGAAAGAAATTATCAAAACGAAGAACATTTTTCAAATTTAACGTCTTATCTGTTGGTTTATATAGAAGGTTAAAATCGTGTCCGTCGATCACATCTTATCAGGTGTTGGGGGCAACAAAGGCTTTATTCGCTACAGGAATCACAAAGTTGATCGAAAGAACACAAAATATTTAATTTGGATTGAAAGTGATCTCAAATTTTTGATTGGAGAAAAATCCATTTCCAAAACATAAAATTTCCACTCTTTGCATTTTTCGTACCATTTTTCAACCAAAATAGTTTAATTTTCATGTATTATACTAATTATACTCCTTTGCAGATTTTTTTATTGAGTTTACCTTTTTCAAAAACTTTTTTAGCCCGGCGGGCCTGGGTTCTCCAAATTTGAAAAAATTTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGTTTCATAGTCGACAATACT</pcr_primer_p1>
		<pcr_primer_p2>CGTAAGACAATACCAGAAAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCAGTTTCATAGTCGACAATACTCACATGAGGGATTGGACCAACCCACAAGGTGAAAATTTTTCCGTAGCGCTAAAAAACAATTTTAGAATAAGATCTTCAGGTTAAGCTTACTTTTCTGAACAAGTCCAAAGTAGAAACAACACTCCCAGTTGACCAGAGATAATACACAATTTGGGGTAAATTTCCAATTAGAGGAAGAGAAACTGGTCCAGGTGGAAGACGGGACACTTTCTGGTATTGTCTTACG</canonical_amplicon>
		<polymorphic_amplicon>GCAGTTTCATAGTCGACAATACTCACATGAGGGATTGGACCAACCCACAAGGTGAAAATTTTTCCGTAGCGCTAAAAAACAATTTTAGAATAAGATCTTCAGGTTAAGCTTACTTTTCTGAACAAGTCCAAAGTAGAAACAACACTCCCAGTTGACCAGAGATARTACACAATTTGGGGTAAATTTCCAATTAGAGGAAGAGAAACTGGTCCAGGTGGAAGACGGGACACTTTCTGGTATTGTCTTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26814</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>657601</contig_pos>
        <strand>+</strand>
        <context>AGAGATARTA[A/C]ACAATTTGSG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGAACAAGTCCAAAGTAGAAACAACACTCCCAGTTGACCAGAGATAATA</left_flank>
        <right_flank>ACAATTTGGGGTAAATTTCCAATTAGAGGAAGAGAAACTGGTCCAGGTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATTAACTTATGAGAATTGTGTGAATTCGGAAATTCAAGGCTCACATACTGATTCCATGAATAAACTAGGGTATGACATACCTTGCATTCAATTCCTCAATAATTTTCAACTCCATGACATCCTTCCCGACGCCCATGTTTCTGAACGTTTGCAATGCGAATCTCCTCATCTCTTGCCAATGATCGCCGTTTGTTGATAGCACTCCTTGATCTTCTAAACAAGCAGGTGTTATAGTTTCTACTACAGTAATCCTAACTTTTGATTTCTTGGAACAGGGGAGCATGGAACTTGTCTGCATATTTGTTGCCATTTTTCACAAACACTTCATGAGCAGTTTCATAGTCGACAATACTCACATGAGGGATTGGACCAACCCACAAGGTGAAAATTTTTCCGTAGCGCTAAAAAACAATTTTAGAATAAGATCTTCAGGTTAAGCTTACTTTTCTGAACAAGTCCAAAGTAGAAACAACACTCCCAGTTGACCAGAGATAATACACAATTTGGGGTAAATTTCCAATTAGAGGAAGAGAAACTGGTCCAGGTGGAAGACGGGACACTTTCTGGTATTGTCTTACGACCAACCAGGTGAGAAAGAAAGAAATTATCAAAACGAAGAACATTTTTCAAATTTAACGTCTTATCTGTTGGTTTATATAGAAGGTTAAAATCGTGTCCGTCGATCACATCTTATCAGGTGTTGGGGGCAACAAAGGCTTTATTCGCTACAGGAATCACAAAGTTGATCGAAAGAACACAAAATATTTAATTTGGATTGAAAGTGATCTCAAATTTTTGATTGGAGAAAAATCCATTTCCAAAACATAAAATTTCCACTCTTTGCATTTTTCGTACCATTTTTCAACCAAAATAGTTTAATTTTCATGTATTATACTAATTATACTCCTTTGCAGATTTTTTTATTGAGTTTACCTTTTTCAAAAACTTTTTTAGCCCGGCGGGCCTGGGTTCTCCAAATTTGAAAAAATTTTGAAATG</canonical>
            <polymorphic>ATATTAACTTATGAGAATTGTGTGAATTCGGAAATTCAAGGCTCACATACTGATTCCATGAATAAACTAGGGTATGACATACCTTGCATTCAATTCCTCAATAATTTTCAACTCCATGACATCCTTCCCGACGCCCATGTTTCTGAACGTTTGCAATGCGAATCTCCTCATCTCTTGCCAATGATCGCCGTTTGTTGATAGCACTCCTTGATCTTCTAAACAAGCAGGTGTTATAGTTTCTACTACAGTAATCCTAACTTTTGATTTCTTGGAACAGGGGAGCATGGAACTTGTCTGCATATTTGTTGCCATTTTTCACAAACACTTCATGAGCAGTTTCATAGTCGACAATACTCACATGAGGGATTGGACCAACCCACAAGGTGAAAATTTTTCCGTAGCGCTAAAAAACAATTTTAGAATAAGATCTTCAGGTTAAGCTTACTTTTCTGAACAAGTCCAAAGTAGAAACAACACTCCCAGTTGACCAGAGATAATAMACAATTTGGGGTAAATTTCCAATTAGAGGAAGAGAAACTGGTCCAGGTGGAAGACGGGACACTTTCTGGTATTGTCTTACGACCAACCAGGTGAGAAAGAAAGAAATTATCAAAACGAAGAACATTTTTCAAATTTAACGTCTTATCTGTTGGTTTATATAGAAGGTTAAAATCGTGTCCGTCGATCACATCTTATCAGGTGTTGGGGGCAACAAAGGCTTTATTCGCTACAGGAATCACAAAGTTGATCGAAAGAACACAAAATATTTAATTTGGATTGAAAGTGATCTCAAATTTTTGATTGGAGAAAAATCCATTTCCAAAACATAAAATTTCCACTCTTTGCATTTTTCGTACCATTTTTCAACCAAAATAGTTTAATTTTCATGTATTATACTAATTATACTCCTTTGCAGATTTTTTTATTGAGTTTACCTTTTTCAAAAACTTTTTTAGCCCGGCGGGCCTGGGTTCTCCAAATTTGAAAAAATTTTGAAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>162 158 90 88 84 52 48 37 33 32 27 27 25 22 22 21 20 14 12 11 7 6 2</canonical_bands>
                <polymorphic_bands>162 158 90 88 84 73 52 37 33 32 27 27 22 22 21 20 14 12 11 7 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAGTTTCATAGTCGACAATACT</pcr_primer_p1>
		<pcr_primer_p2>CGTAAGACAATACCAGAAAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCAGTTTCATAGTCGACAATACTCACATGAGGGATTGGACCAACCCACAAGGTGAAAATTTTTCCGTAGCGCTAAAAAACAATTTTAGAATAAGATCTTCAGGTTAAGCTTACTTTTCTGAACAAGTCCAAAGTAGAAACAACACTCCCAGTTGACCAGAGATAATACACAATTTGGGGTAAATTTCCAATTAGAGGAAGAGAAACTGGTCCAGGTGGAAGACGGGACACTTTCTGGTATTGTCTTACG</canonical_amplicon>
		<polymorphic_amplicon>GCAGTTTCATAGTCGACAATACTCACATGAGGGATTGGACCAACCCACAAGGTGAAAATTTTTCCGTAGCGCTAAAAAACAATTTTAGAATAAGATCTTCAGGTTAAGCTTACTTTTCTGAACAAGTCCAAAGTAGAAACAACACTCCCAGTTGACCAGAGATAATAMACAATTTGGGGTAAATTTCCAATTAGAGGAAGAGAAACTGGTCCAGGTGGAAGACGGGACACTTTCTGGTATTGTCTTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26815</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>657610</contig_pos>
        <strand>+</strand>
        <context>AMACAATTTG[C/G]GGTAAATTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCCAAAGTAGAAACAACACTCCCAGTTGACCAGAGATAATACACAATTTG</left_flank>
        <right_flank>GGTAAATTTCCAATTAGAGGAAGAGAAACTGGTCCAGGTGGAAGACGGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGAGAATTGTGTGAATTCGGAAATTCAAGGCTCACATACTGATTCCATGAATAAACTAGGGTATGACATACCTTGCATTCAATTCCTCAATAATTTTCAACTCCATGACATCCTTCCCGACGCCCATGTTTCTGAACGTTTGCAATGCGAATCTCCTCATCTCTTGCCAATGATCGCCGTTTGTTGATAGCACTCCTTGATCTTCTAAACAAGCAGGTGTTATAGTTTCTACTACAGTAATCCTAACTTTTGATTTCTTGGAACAGGGGAGCATGGAACTTGTCTGCATATTTGTTGCCATTTTTCACAAACACTTCATGAGCAGTTTCATAGTCGACAATACTCACATGAGGGATTGGACCAACCCACAAGGTGAAAATTTTTCCGTAGCGCTAAAAAACAATTTTAGAATAAGATCTTCAGGTTAAGCTTACTTTTCTGAACAAGTCCAAAGTAGAAACAACACTCCCAGTTGACCAGAGATAATACACAATTTGGGGTAAATTTCCAATTAGAGGAAGAGAAACTGGTCCAGGTGGAAGACGGGACACTTTCTGGTATTGTCTTACGACCAACCAGGTGAGAAAGAAAGAAATTATCAAAACGAAGAACATTTTTCAAATTTAACGTCTTATCTGTTGGTTTATATAGAAGGTTAAAATCGTGTCCGTCGATCACATCTTATCAGGTGTTGGGGGCAACAAAGGCTTTATTCGCTACAGGAATCACAAAGTTGATCGAAAGAACACAAAATATTTAATTTGGATTGAAAGTGATCTCAAATTTTTGATTGGAGAAAAATCCATTTCCAAAACATAAAATTTCCACTCTTTGCATTTTTCGTACCATTTTTCAACCAAAATAGTTTAATTTTCATGTATTATACTAATTATACTCCTTTGCAGATTTTTTTATTGAGTTTACCTTTTTCAAAAACTTTTTTAGCCCGGCGGGCCTGGGTTCTCCAAATTTGAAAAAATTTTGAAATGTCAGAAATT</canonical>
            <polymorphic>TATGAGAATTGTGTGAATTCGGAAATTCAAGGCTCACATACTGATTCCATGAATAAACTAGGGTATGACATACCTTGCATTCAATTCCTCAATAATTTTCAACTCCATGACATCCTTCCCGACGCCCATGTTTCTGAACGTTTGCAATGCGAATCTCCTCATCTCTTGCCAATGATCGCCGTTTGTTGATAGCACTCCTTGATCTTCTAAACAAGCAGGTGTTATAGTTTCTACTACAGTAATCCTAACTTTTGATTTCTTGGAACAGGGGAGCATGGAACTTGTCTGCATATTTGTTGCCATTTTTCACAAACACTTCATGAGCAGTTTCATAGTCGACAATACTCACATGAGGGATTGGACCAACCCACAAGGTGAAAATTTTTCCGTAGCGCTAAAAAACAATTTTAGAATAAGATCTTCAGGTTAAGCTTACTTTTCTGAACAAGTCCAAAGTAGAAACAACACTCCCAGTTGACCAGAGATAATACACAATTTGSGGTAAATTTCCAATTAGAGGAAGAGAAACTGGTCCAGGTGGAAGACGGGACACTTTCTGGTATTGTCTTACGACCAACCAGGTGAGAAAGAAAGAAATTATCAAAACGAAGAACATTTTTCAAATTTAACGTCTTATCTGTTGGTTTATATAGAAGGTTAAAATCGTGTCCGTCGATCACATCTTATCAGGTGTTGGGGGCAACAAAGGCTTTATTCGCTACAGGAATCACAAAGTTGATCGAAAGAACACAAAATATTTAATTTGGATTGAAAGTGATCTCAAATTTTTGATTGGAGAAAAATCCATTTCCAAAACATAAAATTTCCACTCTTTGCATTTTTCGTACCATTTTTCAACCAAAATAGTTTAATTTTCATGTATTATACTAATTATACTCCTTTGCAGATTTTTTTATTGAGTTTACCTTTTTCAAAAACTTTTTTAGCCCGGCGGGCCTGGGTTCTCCAAATTTGAAAAAATTTTGAAATGTCAGAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGTTTCATAGTCGACAATACT</pcr_primer_p1>
		<pcr_primer_p2>CGTAAGACAATACCAGAAAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCAGTTTCATAGTCGACAATACTCACATGAGGGATTGGACCAACCCACAAGGTGAAAATTTTTCCGTAGCGCTAAAAAACAATTTTAGAATAAGATCTTCAGGTTAAGCTTACTTTTCTGAACAAGTCCAAAGTAGAAACAACACTCCCAGTTGACCAGAGATAATACACAATTTGGGGTAAATTTCCAATTAGAGGAAGAGAAACTGGTCCAGGTGGAAGACGGGACACTTTCTGGTATTGTCTTACG</canonical_amplicon>
		<polymorphic_amplicon>GCAGTTTCATAGTCGACAATACTCACATGAGGGATTGGACCAACCCACAAGGTGAAAATTTTTCCGTAGCGCTAAAAAACAATTTTAGAATAAGATCTTCAGGTTAAGCTTACTTTTCTGAACAAGTCCAAAGTAGAAACAACACTCCCAGTTGACCAGAGATAATACACAATTTGSGGTAAATTTCCAATTAGAGGAAGAGAAACTGGTCCAGGTGGAAGACGGGACACTTTCTGGTATTGTCTTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26816</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>664152</contig_pos>
        <strand>+</strand>
        <context>GTCTATTGAT[A/G]AATTCTATAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGAACATTGGTATTTTTTTCAACTCCAAGTTTCTTTCTAGTCTATTGAT</left_flank>
        <right_flank>AATTCTATAGTTCCTGTAACGAATATAGTCTTTAGAGCGCTTAAAAAGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGAAGAGCCGGCCCAGCCCGAGGTCTGTACGAACGCTGATTTTTTTGAATTTTTTTTCGAAATTTTTGAAATTGTTTCAAACATATATGCAAAAACAAAATATTTCTGACTACTTTCTACTTTGTTAATTTTGTTAAAAAATGTAACGTTTTTTTCTTTTTTTATTCGAAAAAATTATCCAGTTTTTGATTGGAAATCTTTCAACAGTGGTAGGCGGGCCGGTCCGCGACCCTCGCCGGGCCGGGCCGAGAAAATTCGTCTACCGGCCCGGCCCGGCCTTTTGCAACTATGCAATCTACTATTTTTTTTGAAGTTGCCGCGCAGCTTTCGCAACCGTAGCTCAGCTAGCGACCCGGCAACAACCGGACTCCAACGGTGATCTCACACCCACAAGTATCTTTTCTCATGTCACAAAGTTGAGAAAATAATATCAATGTTGACCAACTAGAGAACATTGGTATTTTTTTCAACTCCAAGTTTCTTTCTAGTCTATTGATAAATTCTATAGTTCCTGTAACGAATATAGTCTTTAGAGCGCTTAAAAAGTGATAAGACGCCAGTTTTTGACCAATAAACCTAACCTCCTTTATATACCGACTGATAAGTTGTTCAATTTGAAGAATGTTCTTCATTTTGGTAATTTCTTTTGTTCTAACCTGGTTAGTCGTAAGACAATACCAGAAAGTGTCCCGTCTTCCACCTGGACCAGTTTCTCTTCCTCTAATTGGAAATTTACCCCAAATTGTGTATTATCTCTGGTCAACTGGGAGTGTTGTTTCTACTTTGGACTTGTTCAGAAAAGTGAGTTTGATTTGAGCAAATTTTACAAAAACTTGTCAAAATTCAGCGATATGGAAACATTTTCACATTGTGGGTTGGTCCAATCCCTCATGTCAGCATTGCCGACTACGAAACTGCTCATGAAGTTTTTGTGAAAAATGGCAACAAATATGCAGACAAGTTCCATGCTCCCCTGTTCCAAGAAATCAAAAGTGAGA</canonical>
            <polymorphic>GATGAAGAGCCGGCCCAGCCCGAGGTCTGTACGAACGCTGATTTTTTTGAATTTTTTTTCGAAATTTTTGAAATTGTTTCAAACATATATGCAAAAACAAAATATTTCTGACTACTTTCTACTTTGTTAATTTTGTTAAAAAATGTAACGTTTTTTTCTTTTTTTATTCGAAAAAATTATCCAGTTTTTGATTGGAAATCTTTCAACAGTGGTAGGCGGGCCGGTCCGCGACCCTCGCCGGGCCGGGCCGAGAAAATTCGTCTACCGGCCCGGCCCGGCCTTTTGCAACTATGCAATCTACTATTTTTTTTGAAGTTGCCGCGCAGCTTTCGCAACCGTAGCTCAGCTAGCGACCCGGCAACAACCGGACTCCAACGGTGATCTCACACCCACAAGTATCTTTTCTCATGTCACAAAGTTGAGAAAATAATATCAATGTTGACCAACTAGAGAACATTGGTATTTTTTTCAACTCCAAGTTTCTTTCTAGTCTATTGATRAATTCTATAGTTCCTGTAACGAATATAGTCTTTAGAGCGCTTAAAAAGTGATAAGACGCCAGTTTTTGACCAATAAACCTAACCTCCTTTATATACCGACTGATAAGTTGTTCAATTTGAAGAATGTTCTTCATTTTGGTAATTTCTTTTGTTCTAACCTGGTTAGTCGTAAGACAATACCAGAAAGTGTCCCGTCTTCCACCTGGACCAGTTTCTCTTCCTCTAATTGGAAATTTACCCCAAATTGTGTATTATCTCTGGTCAACTGGGAGTGTTGTTTCTACTTTGGACTTGTTCAGAAAAGTGAGTTTGATTTGAGCAAATTTTACAAAAACTTGTCAAAATTCAGCGATATGGAAACATTTTCACATTGTGGGTTGGTCCAATCCCTCATGTCAGCATTGCCGACTACGAAACTGCTCATGAAGTTTTTGTGAAAAATGGCAACAAATATGCAGACAAGTTCCATGCTCCCCTGTTCCAAGAAATCAAAAGTGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>246 231 192 158 90 49 21 13</canonical_bands>
                <polymorphic_bands>477 192 158 90 49 21 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAACTAGAGAACATTGGTATTT</pcr_primer_p1>
		<pcr_primer_p2>GGACACTTTCTGGTATTGTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAACTAGAGAACATTGGTATTTTTTTCAACTCCAAGTTTCTTTCTAGTCTATTGATAAATTCTATAGTTCCTGTAACGAATATAGTCTTTAGAGCGCTTAAAAAGTGATAAGACGCCAGTTTTTGACCAATAAACCTAACCTCCTTTATATACCGACTGATAAGTTGTTCAATTTGAAGAATGTTCTTCATTTTGGTAATTTCTTTTGTTCTAACCTGGTTAGTCGTAAGACAATACCAGAAAGTGTCC</canonical_amplicon>
		<polymorphic_amplicon>CCAACTAGAGAACATTGGTATTTTTTTCAACTCCAAGTTTCTTTCTAGTCTATTGATRAATTCTATAGTTCCTGTAACGAATATAGTCTTTAGAGCGCTTAAAAAGTGATAAGACGCCAGTTTTTGACCAATAAACCTAACCTCCTTTATATACCGACTGATAAGTTGTTCAATTTGAAGAATGTTCTTCATTTTGGTAATTTCTTTTGTTCTAACCTGGTTAGTCGTAAGACAATACCAGAAAGTGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26817</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>664410</contig_pos>
        <strand>-</strand>
        <context>TGTATTATCT[G/T]TGGTCAACTG</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCAGTTTCTCTTCCTCTAATTGGAAATTTACCCCAAATTGTGTATTATCT</left_flank>
        <right_flank>TGGTCAACTGGGAGTGTTGTTTCTACTTTGGACTTGTTCAGAAAAGTGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTCTACCGGCCCGGCCCGGCCTTTTGCAACTATGCAATCTACTATTTTTTTTGAAGTTGCCGCGCAGCTTTCGCAACCGTAGCTCAGCTAGCGACCCGGCAACAACCGGACTCCAACGGTGATCTCACACCCACAAGTATCTTTTCTCATGTCACAAAGTTGAGAAAATAATATCAATGTTGACCAACTAGAGAACATTGGTATTTTTTTCAACTCCAAGTTTCTTTCTAGTCTATTGATAAATTCTATAGTTCCTGTAACGAATATAGTCTTTAGAGCGCTTAAAAAGTGATAAGACGCCAGTTTTTGACCAATAAACCTAACCTCCTTTATATACCGACTGATAAGTTGTTCAATTTGAAGAATGTTCTTCATTTTGGTAATTTCTTTTGTTCTAACCTGGTTAGTCGTAAGACAATACCAGAAAGTGTCCCGTCTTCCACCTGGACCAGTTTCTCTTCCTCTAATTGGAAATTTACCCCAAATTGTGTATTATCTCTGGTCAACTGGGAGTGTTGTTTCTACTTTGGACTTGTTCAGAAAAGTGAGTTTGATTTGAGCAAATTTTACAAAAACTTGTCAAAATTCAGCGATATGGAAACATTTTCACATTGTGGGTTGGTCCAATCCCTCATGTCAGCATTGCCGACTACGAAACTGCTCATGAAGTTTTTGTGAAAAATGGCAACAAATATGCAGACAAGTTCCATGCTCCCCTGTTCCAAGAAATCAAAAGTGAGAATTACTGTAGTATAAGCTATCATATCTGCTTGTTTAGACGATCGAGGAGTGGTGGTAACAAACGGCGATCATTGGCAAGAGTTGAGGAGATTTGCGTTGCAAACATTAAGAAACATGGGTGTTGGGAAGGATGTCATGGAATTGAAAATTGTTGAGGAATTGAATGCAAGGTATGTCATACACTATTTTGTTTATACAAGTTGTATGTGAGACTTATAAACGTCGTAAACAAAAAAATAACCTTCTCAGATGCGCTGA</canonical>
            <polymorphic>CGTCTACCGGCCCGGCCCGGCCTTTTGCAACTATGCAATCTACTATTTTTTTTGAAGTTGCCGCGCAGCTTTCGCAACCGTAGCTCAGCTAGCGACCCGGCAACAACCGGACTCCAACGGTGATCTCACACCCACAAGTATCTTTTCTCATGTCACAAAGTTGAGAAAATAATATCAATGTTGACCAACTAGAGAACATTGGTATTTTTTTCAACTCCAAGTTTCTTTCTAGTCTATTGATAAATTCTATAGTTCCTGTAACGAATATAGTCTTTAGAGCGCTTAAAAAGTGATAAGACGCCAGTTTTTGACCAATAAACCTAACCTCCTTTATATACCGACTGATAAGTTGTTCAATTTGAAGAATGTTCTTCATTTTGGTAATTTCTTTTGTTCTAACCTGGTTAGTCGTAAGACAATACCAGAAAGTGTCCCGTCTTCCACCTGGACCAGTTTCTCTTCCTCTAATTGGAAATTTACCCCAAATTGTGTATTATCTKTGGTCAACTGGGAGTGTTGTTTCTACTTTGGACTTGTTCAGAAAAGTGAGTTTGATTTGAGCAAATTTTACAAAAACTTGTCAAAATTCAGCGATATGGAAACATTTTCACATTGTGGGTTGGTCCAATCCCTCATGTCAGCATTGCCGACTACGAAACTGCTCATGAAGTTTTTGTGAAAAATGGCAACAAATATGCAGACAAGTTCCATGCTCCCCTGTTCCAAGAAATCAAAAGTGAGAATTACTGTAGTATAAGCTATCATATCTGCTTGTTTAGACGATCGAGGAGTGGTGGTAACAAACGGCGATCATTGGCAAGAGTTGAGGAGATTTGCGTTGCAAACATTAAGAAACATGGGTGTTGGGAAGGATGTCATGGAATTGAAAATTGTTGAGGAATTGAATGCAAGGTATGTCATACACTATTTTGTTTATACAAGTTGTATGTGAGACTTATAAACGTCGTAAACAAAAAAATAACCTTCTCAGATGCGCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAATAAACCTAACCTCCTTTAT</pcr_primer_p1>
		<pcr_primer_p2>CTCAAATCAAACTCACTTTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAATAAACCTAACCTCCTTTATATACCGACTGATAAGTTGTTCAATTTGAAGAATGTTCTTCATTTTGGTAATTTCTTTTGTTCTAACCTGGTTAGTCGTAAGACAATACCAGAAAGTGTCCCGTCTTCCACCTGGACCAGTTTCTCTTCCTCTAATTGGAAATTTACCCCAAATTGTGTATTATCTCTGGTCAACTGGGAGTGTTGTTTCTACTTTGGACTTGTTCAGAAAAGTGAGTTTGATTTGAG</canonical_amplicon>
		<polymorphic_amplicon>CCAATAAACCTAACCTCCTTTATATACCGACTGATAAGTTGTTCAATTTGAAGAATGTTCTTCATTTTGGTAATTTCTTTTGTTCTAACCTGGTTAGTCGTAAGACAATACCAGAAAGTGTCCCGTCTTCCACCTGGACCAGTTTCTCTTCCTCTAATTGGAAATTTACCCCAAATTGTGTATTATCTKTGGTCAACTGGGAGTGTTGTTTCTACTTTGGACTTGTTCAGAAAAGTGAGTTTGATTTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26818</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>666189</contig_pos>
        <strand>+</strand>
        <context>AGAAAGAAAA[A/C]ATTATTTCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATCTCATTCATATTTCATTTCAATTTGAATCATAAGATTAGAAAGAAAA</left_flank>
        <right_flank>ATTATTTCAGCAAAAATTTCACTTGCGATTAATGAAAAACCAAACCTACC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATATGGTTGATTCTGGAACATTTGTCACCGCACAACTCAGCGCTCTCCATATCAACGAAACAGTTTTTGAAAATCCCCAAAAATTCGATCCAGAAAGATTCATCCGCGATGAGTCACTTCTTCAGAAAGTTATACCGTTTGGGGTTGGAAAACGTGCATGCCTGGGGGAGTCGCTGGCTAGATCCGAACTGTACTTGGTGAGTTGAAACTTATAGATTTCAAAATTATAATCGTTTTTATTTCAGATTTTCGGAAATCTCTTGCTTCGTTATAATTTCAAGCCGCACGGAAAACTGTCGACTGTTGAAGTGCTACCGTACAGTTTTGTCAAGAGACCATTCAAGCTTGAAATGCAATTCGTGAAGATTTGAATGTGAACAGTTATTTTCGGATAATTTACCGTTTTCTTTTATATTTCTGGAAATAAACACTCAATTTTTTTTACTTTGATCTCATTCATATTTCATTTCAATTTGAATCATAAGATTAGAAAGAAAACATTATTTCAGCAAAAATTTCACTTGCGATTAATGAAAAACCAAACCTACCAAATAAACAAAACTGCAAACAAAAAATGACATATTCTGAAATTTTAAAAAAATTTTAAATGTTTGGAAGCAAGCACAATGAACGATATTTTTATGGAAACTCTCAAAAAATTCGAAAAAAAACAGGCAAATCTTAAATCACAGAAAACTTTTTTAAAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCTATTCTACTTTTTTTGAAGGATATAGTGAAGGGTTTTTGAAATGGAGGACTTTTGTAGGAAACGAGTCAGCTTACTGTAGAGGAATAATTGCAAAGGAGGACGGTCGAAAAATTAGTCTTTAAACAAATGGTACGGTCACCAAAATTCGAATGATGTCTTTCCGTTGAGATGCTTTGGATGTCAAATATACCGGAAATTATGCTCTCAAAACTCTATTTCTTGAACGTTTAAATTTTCAGTCAAA</canonical>
            <polymorphic>CATATGGTTGATTCTGGAACATTTGTCACCGCACAACTCAGCGCTCTCCATATCAACGAAACAGTTTTTGAAAATCCCCAAAAATTCGATCCAGAAAGATTCATCCGCGATGAGTCACTTCTTCAGAAAGTTATACCGTTTGGGGTTGGAAAACGTGCATGCCTGGGGGAGTCGCTGGCTAGATCCGAACTGTACTTGGTGAGTTGAAACTTATAGATTTCAAAATTATAATCGTTTTTATTTCAGATTTTCGGAAATCTCTTGCTTCGTTATAATTTCAAGCCGCACGGAAAACTGTCGACTGTTGAAGTGCTACCGTACAGTTTTGTCAAGAGACCATTCAAGCTTGAAATGCAATTCGTGAAGATTTGAATGTGAACAGTTATTTTCGGATAATTTACCGTTTTCTTTTATATTTCTGGAAATAAACACTCAATTTTTTTTACTTTGATCTCATTCATATTTCATTTCAATTTGAATCATAAGATTAGAAAGAAAAMATTATTTCAGCAAAAATTTCACTTGCGATTAATGAAAAACCAAACCTACCAAATAAACAAAACTGCAAACAAAAAATGACATATTCTGAAATTTTAAAAAAATTTTAAATGTTTGGAAGCAAGCACAATGAACGATATTTTTATGGAAACTCTCAAAAAATTCGAAAAAAAACAGGCAAATCTTAAATCACAGAAAACTTTTTTAAAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCTATTCTACTTTTTTTGAAGGATATAGTGAAGGGTTTTTGAAATGGAGGACTTTTGTAGGAAACGAGTCAGCTTACTGTAGAGGAATAATTGCAAAGGAGGACGGTCGAAAAATTAGTCTTTAAACAAATGGTACGGTCACCAAAATTCGAATGATGTCTTTCCGTTGAGATGCTTTGGATGTCAAATATACCGGAAATTATGCTCTCAAAACTCTATTTCTTGAACGTTTAAATTTTCAGTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACAGTTTTGTCAAGAGACCAT</pcr_primer_p1>
		<pcr_primer_p2>CAGTTTTGTTTATTTGGTAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTACAGTTTTGTCAAGAGACCATTCAAGCTTGAAATGCAATTCGTGAAGATTTGAATGTGAACAGTTATTTTCGGATAATTTACCGTTTTCTTTTATATTTCTGGAAATAAACACTCAATTTTTTTTACTTTGATCTCATTCATATTTCATTTCAATTTGAATCATAAGATTAGAAAGAAAACATTATTTCAGCAAAAATTTCACTTGCGATTAATGAAAAACCAAACCTACCAAATAAACAAAACTG</canonical_amplicon>
		<polymorphic_amplicon>GTACAGTTTTGTCAAGAGACCATTCAAGCTTGAAATGCAATTCGTGAAGATTTGAATGTGAACAGTTATTTTCGGATAATTTACCGTTTTCTTTTATATTTCTGGAAATAAACACTCAATTTTTTTTACTTTGATCTCATTCATATTTCATTTCAATTTGAATCATAAGATTAGAAAGAAAAMATTATTTCAGCAAAAATTTCACTTGCGATTAATGAAAAACCAAACCTACCAAATAAACAAAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26819</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>666216</contig_pos>
        <strand>+</strand>
        <context>TTTCACTTGC[G/T]ATTAATGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAATCATAAGATTAGAAAGAAAACATTATTTCAGCAAAAATTTCACTTGC</left_flank>
        <right_flank>ATTAATGAAAAACCAAACCTACCAAATAAACAAAACTGCAAACAAAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCGCACAACTCAGCGCTCTCCATATCAACGAAACAGTTTTTGAAAATCCCCAAAAATTCGATCCAGAAAGATTCATCCGCGATGAGTCACTTCTTCAGAAAGTTATACCGTTTGGGGTTGGAAAACGTGCATGCCTGGGGGAGTCGCTGGCTAGATCCGAACTGTACTTGGTGAGTTGAAACTTATAGATTTCAAAATTATAATCGTTTTTATTTCAGATTTTCGGAAATCTCTTGCTTCGTTATAATTTCAAGCCGCACGGAAAACTGTCGACTGTTGAAGTGCTACCGTACAGTTTTGTCAAGAGACCATTCAAGCTTGAAATGCAATTCGTGAAGATTTGAATGTGAACAGTTATTTTCGGATAATTTACCGTTTTCTTTTATATTTCTGGAAATAAACACTCAATTTTTTTTACTTTGATCTCATTCATATTTCATTTCAATTTGAATCATAAGATTAGAAAGAAAACATTATTTCAGCAAAAATTTCACTTGCGATTAATGAAAAACCAAACCTACCAAATAAACAAAACTGCAAACAAAAAATGACATATTCTGAAATTTTAAAAAAATTTTAAATGTTTGGAAGCAAGCACAATGAACGATATTTTTATGGAAACTCTCAAAAAATTCGAAAAAAAACAGGCAAATCTTAAATCACAGAAAACTTTTTTAAAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCTATTCTACTTTTTTTGAAGGATATAGTGAAGGGTTTTTGAAATGGAGGACTTTTGTAGGAAACGAGTCAGCTTACTGTAGAGGAATAATTGCAAAGGAGGACGGTCGAAAAATTAGTCTTTAAACAAATGGTACGGTCACCAAAATTCGAATGATGTCTTTCCGTTGAGATGCTTTGGATGTCAAATATACCGGAAATTATGCTCTCAAAACTCTATTTCTTGAACGTTTAAATTTTCAGTCAAATTACTAGATTGAAGTTTGTAGTTTTTT</canonical>
            <polymorphic>ACCGCACAACTCAGCGCTCTCCATATCAACGAAACAGTTTTTGAAAATCCCCAAAAATTCGATCCAGAAAGATTCATCCGCGATGAGTCACTTCTTCAGAAAGTTATACCGTTTGGGGTTGGAAAACGTGCATGCCTGGGGGAGTCGCTGGCTAGATCCGAACTGTACTTGGTGAGTTGAAACTTATAGATTTCAAAATTATAATCGTTTTTATTTCAGATTTTCGGAAATCTCTTGCTTCGTTATAATTTCAAGCCGCACGGAAAACTGTCGACTGTTGAAGTGCTACCGTACAGTTTTGTCAAGAGACCATTCAAGCTTGAAATGCAATTCGTGAAGATTTGAATGTGAACAGTTATTTTCGGATAATTTACCGTTTTCTTTTATATTTCTGGAAATAAACACTCAATTTTTTTTACTTTGATCTCATTCATATTTCATTTCAATTTGAATCATAAGATTAGAAAGAAAACATTATTTCAGCAAAAATTTCACTTGCKATTAATGAAAAACCAAACCTACCAAATAAACAAAACTGCAAACAAAAAATGACATATTCTGAAATTTTAAAAAAATTTTAAATGTTTGGAAGCAAGCACAATGAACGATATTTTTATGGAAACTCTCAAAAAATTCGAAAAAAAACAGGCAAATCTTAAATCACAGAAAACTTTTTTAAAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCTATTCTACTTTTTTTGAAGGATATAGTGAAGGGTTTTTGAAATGGAGGACTTTTGTAGGAAACGAGTCAGCTTACTGTAGAGGAATAATTGCAAAGGAGGACGGTCGAAAAATTAGTCTTTAAACAAATGGTACGGTCACCAAAATTCGAATGATGTCTTTCCGTTGAGATGCTTTGGATGTCAAATATACCGGAAATTATGCTCTCAAAACTCTATTTCTTGAACGTTTAAATTTTCAGTCAAATTACTAGATTGAAGTTTGTAGTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCATTCATATTTCATTTCAATTT</pcr_primer_p1>
		<pcr_primer_p2>CACTCCTCTCAAAATACCTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>CTCATTCATATTTCATTTCAATTTGAATCATAAGATTAGAAAGAAAACATTATTTCAGCAAAAATTTCACTTGCGATTAATGAAAAACCAAACCTACCAAATAAACAAAACTGCAAACAAAAAATGACATATTCTGAAATTTTAAAAAAATTTTAAATGTTTGGAAGCAAGCACAATGAACGATATTTTTATGGAAACTCTCAAAAAATTCGAAAAAAAACAGGCAAATCTTAAATCACAGAAAACTTTTTTAAAAGGTATTTTGAGAGGAGTG</canonical_amplicon>
		<polymorphic_amplicon>CTCATTCATATTTCATTTCAATTTGAATCATAAGATTAGAAAGAAAACATTATTTCAGCAAAAATTTCACTTGCKATTAATGAAAAACCAAACCTACCAAATAAACAAAACTGCAAACAAAAAATGACATATTCTGAAATTTTAAAAAAATTTTAAATGTTTGGAAGCAAGCACAATGAACGATATTTTTATGGAAACTCTCAAAAAATTCGAAAAAAAACAGGCAAATCTTAAATCACAGAAAACTTTTTTAAAAGGTATTTTGAGAGGAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26820</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>666300</contig_pos>
        <strand></strand>
        <context>aattttaaat[G/A]tttggaagca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AACTGCAAACAAAAAATGACATATTCTGAAATTTTAAAAAAATTTTAAAT</left_flank>
        <right_flank>TTTGGAAGCAAGCACAATGAACGATATTTTTATGGAAACTCTCAAAAAAT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTCACTTCTTCAGAAAGTTATACCGTTTGGGGTTGGAAAACGTGCATGCCTGGGGGAGTCGCTGGCTAGATCCGAACTGTACTTGGTGAGTTGAAACTTATAGATTTCAAAATTATAATCGTTTTTATTTCAGATTTTCGGAAATCTCTTGCTTCGTTATAATTTCAAGCCGCACGGAAAACTGTCGACTGTTGAAGTGCTACCGTACAGTTTTGTCAAGAGACCATTCAAGCTTGAAATGCAATTCGTGAAGATTTGAATGTGAACAGTTATTTTCGGATAATTTACCGTTTTCTTTTATATTTCTGGAAATAAACACTCAATTTTTTTTACTTTGATCTCATTCATATTTCATTTCAATTTGAATCATAAGATTAGAAAGAAAACATTATTTCAGCAAAAATTTCACTTGCGATTAATGAAAAACCAAACCTACCAAATAAACAAAACTGCAAACAAAAAATGACATATTCTGAAATTTTAAAAAAATTTTAAATGTTTGGAAGCAAGCACAATGAACGATATTTTTATGGAAACTCTCAAAAAATTCGAAAAAAAACAGGCAAATCTTAAATCACAGAAAACTTTTTTAAAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCTATTCTACTTTTTTTGAAGGATATAGTGAAGGGTTTTTGAAATGGAGGACTTTTGTAGGAAACGAGTCAGCTTACTGTAGAGGAATAATTGCAAAGGAGGACGGTCGAAAAATTAGTCTTTAAACAAATGGTACGGTCACCAAAATTCGAATGATGTCTTTCCGTTGAGATGCTTTGGATGTCAAATATACCGGAAATTATGCTCTCAAAACTCTATTTCTTGAACGTTTAAATTTTCAGTCAAATTACTAGATTGAAGTTTGTAGTTTTTTGATAACTTTAATTTTTCCTCCATTATTTTTCAAATGTCAAAGATGTCAAAGCGTGTTTTGTAGACAAATTAGTCAGTTATAAGG</canonical>
            <polymorphic>GAGTCACTTCTTCAGAAAGTTATACCGTTTGGGGTTGGAAAACGTGCATGCCTGGGGGAGTCGCTGGCTAGATCCGAACTGTACTTGGTGAGTTGAAACTTATAGATTTCAAAATTATAATCGTTTTTATTTCAGATTTTCGGAAATCTCTTGCTTCGTTATAATTTCAAGCCGCACGGAAAACTGTCGACTGTTGAAGTGCTACCGTACAGTTTTGTCAAGAGACCATTCAAGCTTGAAATGCAATTCGTGAAGATTTGAATGTGAACAGTTATTTTCGGATAATTTACCGTTTTCTTTTATATTTCTGGAAATAAACACTCAATTTTTTTTACTTTGATCTCATTCATATTTCATTTCAATTTGAATCATAAGATTAGAAAGAAAACATTATTTCAGCAAAAATTTCACTTGCGATTAATGAAAAACCAAACCTACCAAATAAACAAAACTGCAAACAAAAAATGACATATTCTGAAATTTTAAAAAAATTTTAAATRTTTGGAAGCAAGCACAATGAACGATATTTTTATGGAAACTCTCAAAAAATTCGAAAAAAAACAGGCAAATCTTAAATCACAGAAAACTTTTTTAAAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCTATTCTACTTTTTTTGAAGGATATAGTGAAGGGTTTTTGAAATGGAGGACTTTTGTAGGAAACGAGTCAGCTTACTGTAGAGGAATAATTGCAAAGGAGGACGGTCGAAAAATTAGTCTTTAAACAAATGGTACGGTCACCAAAATTCGAATGATGTCTTTCCGTTGAGATGCTTTGGATGTCAAATATACCGGAAATTATGCTCTCAAAACTCTATTTCTTGAACGTTTAAATTTTCAGTCAAATTACTAGATTGAAGTTTGTAGTTTTTTGATAACTTTAATTTTTCCTCCATTATTTTTCAAATGTCAAAGATGTCAAAGCGTGTTTTGTAGACAAATTAGTCAGTTATAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAACCTACCAAATAAACAAAAC</pcr_primer_p1>
		<pcr_primer_p2>AACCCTTCACTATATCCTTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAACCTACCAAATAAACAAAACTGCAAACAAAAAATGACATATTCTGAAATTTTAAAAAAATTTTAAATGTTTGGAAGCAAGCACAATGAACGATATTTTTATGGAAACTCTCAAAAAATTCGAAAAAAAACAGGCAAATCTTAAATCACAGAAAACTTTTTTAAAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCTATTCTACTTTTTTTGAAGGATATAGTGAAGGGTT</canonical_amplicon>
		<polymorphic_amplicon>CAAACCTACCAAATAAACAAAACTGCAAACAAAAAATGACATATTCTGAAATTTTAAAAAAATTTTAAATRTTTGGAAGCAAGCACAATGAACGATATTTTTATGGAAACTCTCAAAAAATTCGAAAAAAAACAGGCAAATCTTAAATCACAGAAAACTTTTTTAAAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCTATTCTACTTTTTTTGAAGGATATAGTGAAGGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26821</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>666383</contig_pos>
        <strand>+</strand>
        <context>taaATCACAG[A/G]RAACTTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGAAACTCTCAAAAAATTCGAAAAAAAACAGGCAAATCTTAAATCACAG</left_flank>
        <right_flank>AAACTTTTTTAAAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGGTGAGTTGAAACTTATAGATTTCAAAATTATAATCGTTTTTATTTCAGATTTTCGGAAATCTCTTGCTTCGTTATAATTTCAAGCCGCACGGAAAACTGTCGACTGTTGAAGTGCTACCGTACAGTTTTGTCAAGAGACCATTCAAGCTTGAAATGCAATTCGTGAAGATTTGAATGTGAACAGTTATTTTCGGATAATTTACCGTTTTCTTTTATATTTCTGGAAATAAACACTCAATTTTTTTTACTTTGATCTCATTCATATTTCATTTCAATTTGAATCATAAGATTAGAAAGAAAACATTATTTCAGCAAAAATTTCACTTGCGATTAATGAAAAACCAAACCTACCAAATAAACAAAACTGCAAACAAAAAATGACATATTCTGAAATTTTAAAAAAATTTTAAATGTTTGGAAGCAAGCACAATGAACGATATTTTTATGGAAACTCTCAAAAAATTCGAAAAAAAACAGGCAAATCTTAAATCACAGAAAACTTTTTTAAAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCTATTCTACTTTTTTTGAAGGATATAGTGAAGGGTTTTTGAAATGGAGGACTTTTGTAGGAAACGAGTCAGCTTACTGTAGAGGAATAATTGCAAAGGAGGACGGTCGAAAAATTAGTCTTTAAACAAATGGTACGGTCACCAAAATTCGAATGATGTCTTTCCGTTGAGATGCTTTGGATGTCAAATATACCGGAAATTATGCTCTCAAAACTCTATTTCTTGAACGTTTAAATTTTCAGTCAAATTACTAGATTGAAGTTTGTAGTTTTTTGATAACTTTAATTTTTCCTCCATTATTTTTCAAATGTCAAAGATGTCAAAGCGTGTTTTGTAGACAAATTAGTCAGTTATAAGGGTCATTGTAATAACACTCTGTGTAGTTTGTAGCCTTCCCGCCGTTTATATAATAGTAAACAGTAACAAAATCATACCGCTGAA</canonical>
            <polymorphic>CTTGGTGAGTTGAAACTTATAGATTTCAAAATTATAATCGTTTTTATTTCAGATTTTCGGAAATCTCTTGCTTCGTTATAATTTCAAGCCGCACGGAAAACTGTCGACTGTTGAAGTGCTACCGTACAGTTTTGTCAAGAGACCATTCAAGCTTGAAATGCAATTCGTGAAGATTTGAATGTGAACAGTTATTTTCGGATAATTTACCGTTTTCTTTTATATTTCTGGAAATAAACACTCAATTTTTTTTACTTTGATCTCATTCATATTTCATTTCAATTTGAATCATAAGATTAGAAAGAAAACATTATTTCAGCAAAAATTTCACTTGCGATTAATGAAAAACCAAACCTACCAAATAAACAAAACTGCAAACAAAAAATGACATATTCTGAAATTTTAAAAAAATTTTAAATGTTTGGAAGCAAGCACAATGAACGATATTTTTATGGAAACTCTCAAAAAATTCGAAAAAAAACAGGCAAATCTTAAATCACAGRAAACTTTTTTAAAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCTATTCTACTTTTTTTGAAGGATATAGTGAAGGGTTTTTGAAATGGAGGACTTTTGTAGGAAACGAGTCAGCTTACTGTAGAGGAATAATTGCAAAGGAGGACGGTCGAAAAATTAGTCTTTAAACAAATGGTACGGTCACCAAAATTCGAATGATGTCTTTCCGTTGAGATGCTTTGGATGTCAAATATACCGGAAATTATGCTCTCAAAACTCTATTTCTTGAACGTTTAAATTTTCAGTCAAATTACTAGATTGAAGTTTGTAGTTTTTTGATAACTTTAATTTTTCCTCCATTATTTTTCAAATGTCAAAGATGTCAAAGCGTGTTTTGTAGACAAATTAGTCAGTTATAAGGGTCATTGTAATAACACTCTGTGTAGTTTGTAGCCTTCCCGCCGTTTATATAATAGTAAACAGTAACAAAATCATACCGCTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAACCTACCAAATAAACAAAAC</pcr_primer_p1>
		<pcr_primer_p2>AACCCTTCACTATATCCTTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAACCTACCAAATAAACAAAACTGCAAACAAAAAATGACATATTCTGAAATTTTAAAAAAATTTTAAATGTTTGGAAGCAAGCACAATGAACGATATTTTTATGGAAACTCTCAAAAAATTCGAAAAAAAACAGGCAAATCTTAAATCACAGAAAACTTTTTTAAAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCTATTCTACTTTTTTTGAAGGATATAGTGAAGGGTT</canonical_amplicon>
		<polymorphic_amplicon>CAAACCTACCAAATAAACAAAACTGCAAACAAAAAATGACATATTCTGAAATTTTAAAAAAATTTTAAATGTTTGGAAGCAAGCACAATGAACGATATTTTTATGGAAACTCTCAAAAAATTCGAAAAAAAACAGGCAAATCTTAAATCACAGRAAACTTTTTTAAAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCTATTCTACTTTTTTTGAAGGATATAGTGAAGGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26822</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>666384</contig_pos>
        <strand>+</strand>
        <context>aaATCACAGR[A/G]AACTTTTTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAAACTCTCAAAAAATTCGAAAAAAAACAGGCAAATCTTAAATCACAGA</left_flank>
        <right_flank>AACTTTTTTAAAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGTGAGTTGAAACTTATAGATTTCAAAATTATAATCGTTTTTATTTCAGATTTTCGGAAATCTCTTGCTTCGTTATAATTTCAAGCCGCACGGAAAACTGTCGACTGTTGAAGTGCTACCGTACAGTTTTGTCAAGAGACCATTCAAGCTTGAAATGCAATTCGTGAAGATTTGAATGTGAACAGTTATTTTCGGATAATTTACCGTTTTCTTTTATATTTCTGGAAATAAACACTCAATTTTTTTTACTTTGATCTCATTCATATTTCATTTCAATTTGAATCATAAGATTAGAAAGAAAACATTATTTCAGCAAAAATTTCACTTGCGATTAATGAAAAACCAAACCTACCAAATAAACAAAACTGCAAACAAAAAATGACATATTCTGAAATTTTAAAAAAATTTTAAATGTTTGGAAGCAAGCACAATGAACGATATTTTTATGGAAACTCTCAAAAAATTCGAAAAAAAACAGGCAAATCTTAAATCACAGAAAACTTTTTTAAAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCTATTCTACTTTTTTTGAAGGATATAGTGAAGGGTTTTTGAAATGGAGGACTTTTGTAGGAAACGAGTCAGCTTACTGTAGAGGAATAATTGCAAAGGAGGACGGTCGAAAAATTAGTCTTTAAACAAATGGTACGGTCACCAAAATTCGAATGATGTCTTTCCGTTGAGATGCTTTGGATGTCAAATATACCGGAAATTATGCTCTCAAAACTCTATTTCTTGAACGTTTAAATTTTCAGTCAAATTACTAGATTGAAGTTTGTAGTTTTTTGATAACTTTAATTTTTCCTCCATTATTTTTCAAATGTCAAAGATGTCAAAGCGTGTTTTGTAGACAAATTAGTCAGTTATAAGGGTCATTGTAATAACACTCTGTGTAGTTTGTAGCCTTCCCGCCGTTTATATAATAGTAAACAGTAACAAAATCATACCGCTGAAA</canonical>
            <polymorphic>TTGGTGAGTTGAAACTTATAGATTTCAAAATTATAATCGTTTTTATTTCAGATTTTCGGAAATCTCTTGCTTCGTTATAATTTCAAGCCGCACGGAAAACTGTCGACTGTTGAAGTGCTACCGTACAGTTTTGTCAAGAGACCATTCAAGCTTGAAATGCAATTCGTGAAGATTTGAATGTGAACAGTTATTTTCGGATAATTTACCGTTTTCTTTTATATTTCTGGAAATAAACACTCAATTTTTTTTACTTTGATCTCATTCATATTTCATTTCAATTTGAATCATAAGATTAGAAAGAAAACATTATTTCAGCAAAAATTTCACTTGCGATTAATGAAAAACCAAACCTACCAAATAAACAAAACTGCAAACAAAAAATGACATATTCTGAAATTTTAAAAAAATTTTAAATGTTTGGAAGCAAGCACAATGAACGATATTTTTATGGAAACTCTCAAAAAATTCGAAAAAAAACAGGCAAATCTTAAATCACAGARAACTTTTTTAAAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCTATTCTACTTTTTTTGAAGGATATAGTGAAGGGTTTTTGAAATGGAGGACTTTTGTAGGAAACGAGTCAGCTTACTGTAGAGGAATAATTGCAAAGGAGGACGGTCGAAAAATTAGTCTTTAAACAAATGGTACGGTCACCAAAATTCGAATGATGTCTTTCCGTTGAGATGCTTTGGATGTCAAATATACCGGAAATTATGCTCTCAAAACTCTATTTCTTGAACGTTTAAATTTTCAGTCAAATTACTAGATTGAAGTTTGTAGTTTTTTGATAACTTTAATTTTTCCTCCATTATTTTTCAAATGTCAAAGATGTCAAAGCGTGTTTTGTAGACAAATTAGTCAGTTATAAGGGTCATTGTAATAACACTCTGTGTAGTTTGTAGCCTTCCCGCCGTTTATATAATAGTAAACAGTAACAAAATCATACCGCTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAACCTACCAAATAAACAAAAC</pcr_primer_p1>
		<pcr_primer_p2>AACCCTTCACTATATCCTTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAACCTACCAAATAAACAAAACTGCAAACAAAAAATGACATATTCTGAAATTTTAAAAAAATTTTAAATGTTTGGAAGCAAGCACAATGAACGATATTTTTATGGAAACTCTCAAAAAATTCGAAAAAAAACAGGCAAATCTTAAATCACAGAAAACTTTTTTAAAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCTATTCTACTTTTTTTGAAGGATATAGTGAAGGGTT</canonical_amplicon>
		<polymorphic_amplicon>CAAACCTACCAAATAAACAAAACTGCAAACAAAAAATGACATATTCTGAAATTTTAAAAAAATTTTAAATGTTTGGAAGCAAGCACAATGAACGATATTTTTATGGAAACTCTCAAAAAATTCGAAAAAAAACAGGCAAATCTTAAATCACAGARAACTTTTTTAAAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCTATTCTACTTTTTTTGAAGGATATAGTGAAGGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26823</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>666445</contig_pos>
        <strand>+</strand>
        <context>CCTATCTTGC[A/T]ATTYTACTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGC</left_flank>
        <right_flank>ATTCTACTTTTTTTGAAGGATATAGTGAAGGGTTTTTGAAATGGAGGACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTCTTGCTTCGTTATAATTTCAAGCCGCACGGAAAACTGTCGACTGTTGAAGTGCTACCGTACAGTTTTGTCAAGAGACCATTCAAGCTTGAAATGCAATTCGTGAAGATTTGAATGTGAACAGTTATTTTCGGATAATTTACCGTTTTCTTTTATATTTCTGGAAATAAACACTCAATTTTTTTTACTTTGATCTCATTCATATTTCATTTCAATTTGAATCATAAGATTAGAAAGAAAACATTATTTCAGCAAAAATTTCACTTGCGATTAATGAAAAACCAAACCTACCAAATAAACAAAACTGCAAACAAAAAATGACATATTCTGAAATTTTAAAAAAATTTTAAATGTTTGGAAGCAAGCACAATGAACGATATTTTTATGGAAACTCTCAAAAAATTCGAAAAAAAACAGGCAAATCTTAAATCACAGAAAACTTTTTTAAAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCTATTCTACTTTTTTTGAAGGATATAGTGAAGGGTTTTTGAAATGGAGGACTTTTGTAGGAAACGAGTCAGCTTACTGTAGAGGAATAATTGCAAAGGAGGACGGTCGAAAAATTAGTCTTTAAACAAATGGTACGGTCACCAAAATTCGAATGATGTCTTTCCGTTGAGATGCTTTGGATGTCAAATATACCGGAAATTATGCTCTCAAAACTCTATTTCTTGAACGTTTAAATTTTCAGTCAAATTACTAGATTGAAGTTTGTAGTTTTTTGATAACTTTAATTTTTCCTCCATTATTTTTCAAATGTCAAAGATGTCAAAGCGTGTTTTGTAGACAAATTAGTCAGTTATAAGGGTCATTGTAATAACACTCTGTGTAGTTTGTAGCCTTCCCGCCGTTTATATAATAGTAAACAGTAACAAAATCATACCGCTGAAAGAAAAATGATTTTCATTTTACTCCTCACCACTTTCCTAGCCATTCTGATAGTTCGCCAGTA</canonical>
            <polymorphic>ATCTCTTGCTTCGTTATAATTTCAAGCCGCACGGAAAACTGTCGACTGTTGAAGTGCTACCGTACAGTTTTGTCAAGAGACCATTCAAGCTTGAAATGCAATTCGTGAAGATTTGAATGTGAACAGTTATTTTCGGATAATTTACCGTTTTCTTTTATATTTCTGGAAATAAACACTCAATTTTTTTTACTTTGATCTCATTCATATTTCATTTCAATTTGAATCATAAGATTAGAAAGAAAACATTATTTCAGCAAAAATTTCACTTGCGATTAATGAAAAACCAAACCTACCAAATAAACAAAACTGCAAACAAAAAATGACATATTCTGAAATTTTAAAAAAATTTTAAATGTTTGGAAGCAAGCACAATGAACGATATTTTTATGGAAACTCTCAAAAAATTCGAAAAAAAACAGGCAAATCTTAAATCACAGAAAACTTTTTTAAAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCWATTCTACTTTTTTTGAAGGATATAGTGAAGGGTTTTTGAAATGGAGGACTTTTGTAGGAAACGAGTCAGCTTACTGTAGAGGAATAATTGCAAAGGAGGACGGTCGAAAAATTAGTCTTTAAACAAATGGTACGGTCACCAAAATTCGAATGATGTCTTTCCGTTGAGATGCTTTGGATGTCAAATATACCGGAAATTATGCTCTCAAAACTCTATTTCTTGAACGTTTAAATTTTCAGTCAAATTACTAGATTGAAGTTTGTAGTTTTTTGATAACTTTAATTTTTCCTCCATTATTTTTCAAATGTCAAAGATGTCAAAGCGTGTTTTGTAGACAAATTAGTCAGTTATAAGGGTCATTGTAATAACACTCTGTGTAGTTTGTAGCCTTCCCGCCGTTTATATAATAGTAAACAGTAACAAAATCATACCGCTGAAAGAAAAATGATTTTCATTTTACTCCTCACCACTTTCCTAGCCATTCTGATAGTTCGCCAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAAGGTATTTTGAGAGGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TAATTTCCGGTATATTTGACATC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAAAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCTATTCTACTTTTTTTGAAGGATATAGTGAAGGGTTTTTGAAATGGAGGACTTTTGTAGGAAACGAGTCAGCTTACTGTAGAGGAATAATTGCAAAGGAGGACGGTCGAAAAATTAGTCTTTAAACAAATGGTACGGTCACCAAAATTCGAATGATGTCTTTCCGTTGAGATGCTTTGGATGTCAAATATACCGGAAATTA</canonical_amplicon>
		<polymorphic_amplicon>TAAAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCWATTCTACTTTTTTTGAAGGATATAGTGAAGGGTTTTTGAAATGGAGGACTTTTGTAGGAAACGAGTCAGCTTACTGTAGAGGAATAATTGCAAAGGAGGACGGTCGAAAAATTAGTCTTTAAACAAATGGTACGGTCACCAAAATTCGAATGATGTCTTTCCGTTGAGATGCTTTGGATGTCAAATATACCGGAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26824</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>666449</contig_pos>
        <strand>+</strand>
        <context>TCTTGCWATT[C/T]TACTTTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCTATT</left_flank>
        <right_flank>TACTTTTTTTGAAGGATATAGTGAAGGGTTTTTGAAATGGAGGACTTTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGCTTCGTTATAATTTCAAGCCGCACGGAAAACTGTCGACTGTTGAAGTGCTACCGTACAGTTTTGTCAAGAGACCATTCAAGCTTGAAATGCAATTCGTGAAGATTTGAATGTGAACAGTTATTTTCGGATAATTTACCGTTTTCTTTTATATTTCTGGAAATAAACACTCAATTTTTTTTACTTTGATCTCATTCATATTTCATTTCAATTTGAATCATAAGATTAGAAAGAAAACATTATTTCAGCAAAAATTTCACTTGCGATTAATGAAAAACCAAACCTACCAAATAAACAAAACTGCAAACAAAAAATGACATATTCTGAAATTTTAAAAAAATTTTAAATGTTTGGAAGCAAGCACAATGAACGATATTTTTATGGAAACTCTCAAAAAATTCGAAAAAAAACAGGCAAATCTTAAATCACAGAAAACTTTTTTAAAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCTATTCTACTTTTTTTGAAGGATATAGTGAAGGGTTTTTGAAATGGAGGACTTTTGTAGGAAACGAGTCAGCTTACTGTAGAGGAATAATTGCAAAGGAGGACGGTCGAAAAATTAGTCTTTAAACAAATGGTACGGTCACCAAAATTCGAATGATGTCTTTCCGTTGAGATGCTTTGGATGTCAAATATACCGGAAATTATGCTCTCAAAACTCTATTTCTTGAACGTTTAAATTTTCAGTCAAATTACTAGATTGAAGTTTGTAGTTTTTTGATAACTTTAATTTTTCCTCCATTATTTTTCAAATGTCAAAGATGTCAAAGCGTGTTTTGTAGACAAATTAGTCAGTTATAAGGGTCATTGTAATAACACTCTGTGTAGTTTGTAGCCTTCCCGCCGTTTATATAATAGTAAACAGTAACAAAATCATACCGCTGAAAGAAAAATGATTTTCATTTTACTCCTCACCACTTTCCTAGCCATTCTGATAGTTCGCCAGTACCAG</canonical>
            <polymorphic>CTTGCTTCGTTATAATTTCAAGCCGCACGGAAAACTGTCGACTGTTGAAGTGCTACCGTACAGTTTTGTCAAGAGACCATTCAAGCTTGAAATGCAATTCGTGAAGATTTGAATGTGAACAGTTATTTTCGGATAATTTACCGTTTTCTTTTATATTTCTGGAAATAAACACTCAATTTTTTTTACTTTGATCTCATTCATATTTCATTTCAATTTGAATCATAAGATTAGAAAGAAAACATTATTTCAGCAAAAATTTCACTTGCGATTAATGAAAAACCAAACCTACCAAATAAACAAAACTGCAAACAAAAAATGACATATTCTGAAATTTTAAAAAAATTTTAAATGTTTGGAAGCAAGCACAATGAACGATATTTTTATGGAAACTCTCAAAAAATTCGAAAAAAAACAGGCAAATCTTAAATCACAGAAAACTTTTTTAAAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCTATTYTACTTTTTTTGAAGGATATAGTGAAGGGTTTTTGAAATGGAGGACTTTTGTAGGAAACGAGTCAGCTTACTGTAGAGGAATAATTGCAAAGGAGGACGGTCGAAAAATTAGTCTTTAAACAAATGGTACGGTCACCAAAATTCGAATGATGTCTTTCCGTTGAGATGCTTTGGATGTCAAATATACCGGAAATTATGCTCTCAAAACTCTATTTCTTGAACGTTTAAATTTTCAGTCAAATTACTAGATTGAAGTTTGTAGTTTTTTGATAACTTTAATTTTTCCTCCATTATTTTTCAAATGTCAAAGATGTCAAAGCGTGTTTTGTAGACAAATTAGTCAGTTATAAGGGTCATTGTAATAACACTCTGTGTAGTTTGTAGCCTTCCCGCCGTTTATATAATAGTAAACAGTAACAAAATCATACCGCTGAAAGAAAAATGATTTTCATTTTACTCCTCACCACTTTCCTAGCCATTCTGATAGTTCGCCAGTACCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGGTATTTTGAGAGGAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>TAATTTCCGGTATATTTGACATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCTATTCTACTTTTTTTGAAGGATATAGTGAAGGGTTTTTGAAATGGAGGACTTTTGTAGGAAACGAGTCAGCTTACTGTAGAGGAATAATTGCAAAGGAGGACGGTCGAAAAATTAGTCTTTAAACAAATGGTACGGTCACCAAAATTCGAATGATGTCTTTCCGTTGAGATGCTTTGGATGTCAAATATACCGGAAATTA</canonical_amplicon>
		<polymorphic_amplicon>AAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCTATTYTACTTTTTTTGAAGGATATAGTGAAGGGTTTTTGAAATGGAGGACTTTTGTAGGAAACGAGTCAGCTTACTGTAGAGGAATAATTGCAAAGGAGGACGGTCGAAAAATTAGTCTTTAAACAAATGGTACGGTCACCAAAATTCGAATGATGTCTTTCCGTTGAGATGCTTTGGATGTCAAATATACCGGAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26825</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>666578</contig_pos>
        <strand>+</strand>
        <context>ACAAATGGTA[A/C]GGTCACCAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATAATTGCAAAGGAGGACGGTCGAAAAATTAGTCTTTAAACAAATGGTA</left_flank>
        <right_flank>GGTCACCAAAATTCGAATGATGTCTTTCCGTTGAGATGCTTTGGATGTCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGATAATTTACCGTTTTCTTTTATATTTCTGGAAATAAACACTCAATTTTTTTTACTTTGATCTCATTCATATTTCATTTCAATTTGAATCATAAGATTAGAAAGAAAACATTATTTCAGCAAAAATTTCACTTGCGATTAATGAAAAACCAAACCTACCAAATAAACAAAACTGCAAACAAAAAATGACATATTCTGAAATTTTAAAAAAATTTTAAATGTTTGGAAGCAAGCACAATGAACGATATTTTTATGGAAACTCTCAAAAAATTCGAAAAAAAACAGGCAAATCTTAAATCACAGAAAACTTTTTTAAAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCTATTCTACTTTTTTTGAAGGATATAGTGAAGGGTTTTTGAAATGGAGGACTTTTGTAGGAAACGAGTCAGCTTACTGTAGAGGAATAATTGCAAAGGAGGACGGTCGAAAAATTAGTCTTTAAACAAATGGTACGGTCACCAAAATTCGAATGATGTCTTTCCGTTGAGATGCTTTGGATGTCAAATATACCGGAAATTATGCTCTCAAAACTCTATTTCTTGAACGTTTAAATTTTCAGTCAAATTACTAGATTGAAGTTTGTAGTTTTTTGATAACTTTAATTTTTCCTCCATTATTTTTCAAATGTCAAAGATGTCAAAGCGTGTTTTGTAGACAAATTAGTCAGTTATAAGGGTCATTGTAATAACACTCTGTGTAGTTTGTAGCCTTCCCGCCGTTTATATAATAGTAAACAGTAACAAAATCATACCGCTGAAAGAAAAATGATTTTCATTTTACTCCTCACCACTTTCCTAGCCATTCTGATAGTTCGCCAGTACCAGAAGGCTAAGAAATTCCCTCCGGGACCCACTTCACTTCCTTTCATTGGAAATATTCATCAGCTAATTTACTATTGTTGGAAACACAAGGGAGTTGTCCCTGCATTTGATTATTTTCGACAAGTAAGTCAC</canonical>
            <polymorphic>CGGATAATTTACCGTTTTCTTTTATATTTCTGGAAATAAACACTCAATTTTTTTTACTTTGATCTCATTCATATTTCATTTCAATTTGAATCATAAGATTAGAAAGAAAACATTATTTCAGCAAAAATTTCACTTGCGATTAATGAAAAACCAAACCTACCAAATAAACAAAACTGCAAACAAAAAATGACATATTCTGAAATTTTAAAAAAATTTTAAATGTTTGGAAGCAAGCACAATGAACGATATTTTTATGGAAACTCTCAAAAAATTCGAAAAAAAACAGGCAAATCTTAAATCACAGAAAACTTTTTTAAAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCTATTCTACTTTTTTTGAAGGATATAGTGAAGGGTTTTTGAAATGGAGGACTTTTGTAGGAAACGAGTCAGCTTACTGTAGAGGAATAATTGCAAAGGAGGACGGTCGAAAAATTAGTCTTTAAACAAATGGTAMGGTCACCAAAATTCGAATGATGTCTTTCCGTTGAGATGCTTTGGATGTCAAATATACCGGAAATTATGCTCTCAAAACTCTATTTCTTGAACGTTTAAATTTTCAGTCAAATTACTAGATTGAAGTTTGTAGTTTTTTGATAACTTTAATTTTTCCTCCATTATTTTTCAAATGTCAAAGATGTCAAAGCGTGTTTTGTAGACAAATTAGTCAGTTATAAGGGTCATTGTAATAACACTCTGTGTAGTTTGTAGCCTTCCCGCCGTTTATATAATAGTAAACAGTAACAAAATCATACCGCTGAAAGAAAAATGATTTTCATTTTACTCCTCACCACTTTCCTAGCCATTCTGATAGTTCGCCAGTACCAGAAGGCTAAGAAATTCCCTCCGGGACCCACTTCACTTCCTTTCATTGGAAATATTCATCAGCTAATTTACTATTGTTGGAAACACAAGGGAGTTGTCCCTGCATTTGATTATTTTCGACAAGTAAGTCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>498 368 134</canonical_bands>
                <polymorphic_bands>866 134</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>429 282 217 32 27 13</canonical_bands>
                <polymorphic_bands>429 314 217 27 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGGTATTTTGAGAGGAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>TAATTTCCGGTATATTTGACATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCTATTCTACTTTTTTTGAAGGATATAGTGAAGGGTTTTTGAAATGGAGGACTTTTGTAGGAAACGAGTCAGCTTACTGTAGAGGAATAATTGCAAAGGAGGACGGTCGAAAAATTAGTCTTTAAACAAATGGTACGGTCACCAAAATTCGAATGATGTCTTTCCGTTGAGATGCTTTGGATGTCAAATATACCGGAAATTA</canonical_amplicon>
		<polymorphic_amplicon>AAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCTATTCTACTTTTTTTGAAGGATATAGTGAAGGGTTTTTGAAATGGAGGACTTTTGTAGGAAACGAGTCAGCTTACTGTAGAGGAATAATTGCAAAGGAGGACGGTCGAAAAATTAGTCTTTAAACAAATGGTAMGGTCACCAAAATTCGAATGATGTCTTTCCGTTGAGATGCTTTGGATGTCAAATATACCGGAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26826</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>666675</contig_pos>
        <strand>+</strand>
        <context>TTGAACGTTT[A/T]WATTTTCAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCAAATATACCGGAAATTATGCTCTCAAAACTCTATTTCTTGAACGTTT</left_flank>
        <right_flank>AATTTTCAGTCAAATTACTAGATTGAAGTTTGTAGTTTTTTGATAACTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTAGAAAGAAAACATTATTTCAGCAAAAATTTCACTTGCGATTAATGAAAAACCAAACCTACCAAATAAACAAAACTGCAAACAAAAAATGACATATTCTGAAATTTTAAAAAAATTTTAAATGTTTGGAAGCAAGCACAATGAACGATATTTTTATGGAAACTCTCAAAAAATTCGAAAAAAAACAGGCAAATCTTAAATCACAGAAAACTTTTTTAAAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCTATTCTACTTTTTTTGAAGGATATAGTGAAGGGTTTTTGAAATGGAGGACTTTTGTAGGAAACGAGTCAGCTTACTGTAGAGGAATAATTGCAAAGGAGGACGGTCGAAAAATTAGTCTTTAAACAAATGGTACGGTCACCAAAATTCGAATGATGTCTTTCCGTTGAGATGCTTTGGATGTCAAATATACCGGAAATTATGCTCTCAAAACTCTATTTCTTGAACGTTTAAATTTTCAGTCAAATTACTAGATTGAAGTTTGTAGTTTTTTGATAACTTTAATTTTTCCTCCATTATTTTTCAAATGTCAAAGATGTCAAAGCGTGTTTTGTAGACAAATTAGTCAGTTATAAGGGTCATTGTAATAACACTCTGTGTAGTTTGTAGCCTTCCCGCCGTTTATATAATAGTAAACAGTAACAAAATCATACCGCTGAAAGAAAAATGATTTTCATTTTACTCCTCACCACTTTCCTAGCCATTCTGATAGTTCGCCAGTACCAGAAGGCTAAGAAATTCCCTCCGGGACCCACTTCACTTCCTTTCATTGGAAATATTCATCAGCTAATTTACTATTGTTGGAAACACAAGGGAGTTGTCCCTGCATTTGATTATTTTCGACAAGTAAGTCACATGCATCAGGAAATGAATCAATAAATTACTCTAGACCTATGGAGATGTGTTTACTCTTTGGTTGGGACCAATTCCTCATGTAAGTATTTGTGATTAT</canonical>
            <polymorphic>ATTAGAAAGAAAACATTATTTCAGCAAAAATTTCACTTGCGATTAATGAAAAACCAAACCTACCAAATAAACAAAACTGCAAACAAAAAATGACATATTCTGAAATTTTAAAAAAATTTTAAATGTTTGGAAGCAAGCACAATGAACGATATTTTTATGGAAACTCTCAAAAAATTCGAAAAAAAACAGGCAAATCTTAAATCACAGAAAACTTTTTTAAAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCTATTCTACTTTTTTTGAAGGATATAGTGAAGGGTTTTTGAAATGGAGGACTTTTGTAGGAAACGAGTCAGCTTACTGTAGAGGAATAATTGCAAAGGAGGACGGTCGAAAAATTAGTCTTTAAACAAATGGTACGGTCACCAAAATTCGAATGATGTCTTTCCGTTGAGATGCTTTGGATGTCAAATATACCGGAAATTATGCTCTCAAAACTCTATTTCTTGAACGTTTWAATTTTCAGTCAAATTACTAGATTGAAGTTTGTAGTTTTTTGATAACTTTAATTTTTCCTCCATTATTTTTCAAATGTCAAAGATGTCAAAGCGTGTTTTGTAGACAAATTAGTCAGTTATAAGGGTCATTGTAATAACACTCTGTGTAGTTTGTAGCCTTCCCGCCGTTTATATAATAGTAAACAGTAACAAAATCATACCGCTGAAAGAAAAATGATTTTCATTTTACTCCTCACCACTTTCCTAGCCATTCTGATAGTTCGCCAGTACCAGAAGGCTAAGAAATTCCCTCCGGGACCCACTTCACTTCCTTTCATTGGAAATATTCATCAGCTAATTTACTATTGTTGGAAACACAAGGGAGTTGTCCCTGCATTTGATTATTTTCGACAAGTAAGTCACATGCATCAGGAAATGAATCAATAAATTACTCTAGACCTATGGAGATGTGTTTACTCTTTGGTTGGGACCAATTCCTCATGTAAGTATTTGTGATTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>284 240 216 88 75 58 28 11</canonical_bands>
                <polymorphic_bands>372 240 216 75 58 28 11</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 172 109 109 98 11</canonical_bands>
                <polymorphic_bands>610 172 109 98 11</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>451 172 109 78 65 51 43 20 11</canonical_bands>
                <polymorphic_bands>451 172 160 78 65 43 20 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAACGAGTCAGCTTACTGTAGA</pcr_primer_p1>
		<pcr_primer_p2>ATTTGAAAAATAATGGAGGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAACGAGTCAGCTTACTGTAGAGGAATAATTGCAAAGGAGGACGGTCGAAAAATTAGTCTTTAAACAAATGGTACGGTCACCAAAATTCGAATGATGTCTTTCCGTTGAGATGCTTTGGATGTCAAATATACCGGAAATTATGCTCTCAAAACTCTATTTCTTGAACGTTTAAATTTTCAGTCAAATTACTAGATTGAAGTTTGTAGTTTTTTGATAACTTTAATTTTTCCTCCATTATTTTTCAAAT</canonical_amplicon>
		<polymorphic_amplicon>GAAACGAGTCAGCTTACTGTAGAGGAATAATTGCAAAGGAGGACGGTCGAAAAATTAGTCTTTAAACAAATGGTACGGTCACCAAAATTCGAATGATGTCTTTCCGTTGAGATGCTTTGGATGTCAAATATACCGGAAATTATGCTCTCAAAACTCTATTTCTTGAACGTTTWAATTTTCAGTCAAATTACTAGATTGAAGTTTGTAGTTTTTTGATAACTTTAATTTTTCCTCCATTATTTTTCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26827</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>666676</contig_pos>
        <strand>+</strand>
        <context>TGAACGTTTW[A/T]ATTTTCAGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAAATATACCGGAAATTATGCTCTCAAAACTCTATTTCTTGAACGTTTA</left_flank>
        <right_flank>ATTTTCAGTCAAATTACTAGATTGAAGTTTGTAGTTTTTTGATAACTTTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAGAAAGAAAACATTATTTCAGCAAAAATTTCACTTGCGATTAATGAAAAACCAAACCTACCAAATAAACAAAACTGCAAACAAAAAATGACATATTCTGAAATTTTAAAAAAATTTTAAATGTTTGGAAGCAAGCACAATGAACGATATTTTTATGGAAACTCTCAAAAAATTCGAAAAAAAACAGGCAAATCTTAAATCACAGAAAACTTTTTTAAAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCTATTCTACTTTTTTTGAAGGATATAGTGAAGGGTTTTTGAAATGGAGGACTTTTGTAGGAAACGAGTCAGCTTACTGTAGAGGAATAATTGCAAAGGAGGACGGTCGAAAAATTAGTCTTTAAACAAATGGTACGGTCACCAAAATTCGAATGATGTCTTTCCGTTGAGATGCTTTGGATGTCAAATATACCGGAAATTATGCTCTCAAAACTCTATTTCTTGAACGTTTAAATTTTCAGTCAAATTACTAGATTGAAGTTTGTAGTTTTTTGATAACTTTAATTTTTCCTCCATTATTTTTCAAATGTCAAAGATGTCAAAGCGTGTTTTGTAGACAAATTAGTCAGTTATAAGGGTCATTGTAATAACACTCTGTGTAGTTTGTAGCCTTCCCGCCGTTTATATAATAGTAAACAGTAACAAAATCATACCGCTGAAAGAAAAATGATTTTCATTTTACTCCTCACCACTTTCCTAGCCATTCTGATAGTTCGCCAGTACCAGAAGGCTAAGAAATTCCCTCCGGGACCCACTTCACTTCCTTTCATTGGAAATATTCATCAGCTAATTTACTATTGTTGGAAACACAAGGGAGTTGTCCCTGCATTTGATTATTTTCGACAAGTAAGTCACATGCATCAGGAAATGAATCAATAAATTACTCTAGACCTATGGAGATGTGTTTACTCTTTGGTTGGGACCAATTCCTCATGTAAGTATTTGTGATTATG</canonical>
            <polymorphic>TTAGAAAGAAAACATTATTTCAGCAAAAATTTCACTTGCGATTAATGAAAAACCAAACCTACCAAATAAACAAAACTGCAAACAAAAAATGACATATTCTGAAATTTTAAAAAAATTTTAAATGTTTGGAAGCAAGCACAATGAACGATATTTTTATGGAAACTCTCAAAAAATTCGAAAAAAAACAGGCAAATCTTAAATCACAGAAAACTTTTTTAAAAGGTATTTTGAGAGGAGTGAGAACTTGTTTATAAAGAGCCTATCTTGCTATTCTACTTTTTTTGAAGGATATAGTGAAGGGTTTTTGAAATGGAGGACTTTTGTAGGAAACGAGTCAGCTTACTGTAGAGGAATAATTGCAAAGGAGGACGGTCGAAAAATTAGTCTTTAAACAAATGGTACGGTCACCAAAATTCGAATGATGTCTTTCCGTTGAGATGCTTTGGATGTCAAATATACCGGAAATTATGCTCTCAAAACTCTATTTCTTGAACGTTTAWATTTTCAGTCAAATTACTAGATTGAAGTTTGTAGTTTTTTGATAACTTTAATTTTTCCTCCATTATTTTTCAAATGTCAAAGATGTCAAAGCGTGTTTTGTAGACAAATTAGTCAGTTATAAGGGTCATTGTAATAACACTCTGTGTAGTTTGTAGCCTTCCCGCCGTTTATATAATAGTAAACAGTAACAAAATCATACCGCTGAAAGAAAAATGATTTTCATTTTACTCCTCACCACTTTCCTAGCCATTCTGATAGTTCGCCAGTACCAGAAGGCTAAGAAATTCCCTCCGGGACCCACTTCACTTCCTTTCATTGGAAATATTCATCAGCTAATTTACTATTGTTGGAAACACAAGGGAGTTGTCCCTGCATTTGATTATTTTCGACAAGTAAGTCACATGCATCAGGAAATGAATCAATAAATTACTCTAGACCTATGGAGATGTGTTTACTCTTTGGTTGGGACCAATTCCTCATGTAAGTATTTGTGATTATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>284 240 217 88 75 58 27 11</canonical_bands>
                <polymorphic_bands>372 240 217 75 58 27 11</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 172 109 108 98 11</canonical_bands>
                <polymorphic_bands>611 172 108 98 11</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>452 172 109 78 65 51 42 20 11</canonical_bands>
                <polymorphic_bands>452 172 160 78 65 42 20 11</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>183 177 90 75 58 57 52 52 46 38 36 33 29 27 24 12 11</canonical_bands>
                <polymorphic_bands>183 177 90 75 58 57 52 52 48 46 38 33 29 27 24 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAACGAGTCAGCTTACTGTAGA</pcr_primer_p1>
		<pcr_primer_p2>ATTTGAAAAATAATGGAGGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAACGAGTCAGCTTACTGTAGAGGAATAATTGCAAAGGAGGACGGTCGAAAAATTAGTCTTTAAACAAATGGTACGGTCACCAAAATTCGAATGATGTCTTTCCGTTGAGATGCTTTGGATGTCAAATATACCGGAAATTATGCTCTCAAAACTCTATTTCTTGAACGTTTAAATTTTCAGTCAAATTACTAGATTGAAGTTTGTAGTTTTTTGATAACTTTAATTTTTCCTCCATTATTTTTCAAAT</canonical_amplicon>
		<polymorphic_amplicon>GAAACGAGTCAGCTTACTGTAGAGGAATAATTGCAAAGGAGGACGGTCGAAAAATTAGTCTTTAAACAAATGGTACGGTCACCAAAATTCGAATGATGTCTTTCCGTTGAGATGCTTTGGATGTCAAATATACCGGAAATTATGCTCTCAAAACTCTATTTCTTGAACGTTTAWATTTTCAGTCAAATTACTAGATTGAAGTTTGTAGTTTTTTGATAACTTTAATTTTTCCTCCATTATTTTTCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26828</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>671577</contig_pos>
        <strand>+</strand>
        <context>ATCTGGAACC[A/C]GTTGGACCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GACTTTTCTCAGATAACCGGAAACCTGATCCTGGACTTTGATCTGGAACC</left_flank>
        <right_flank>GTTGGACCAGCGCCAGAAATCAAGACAACTGCTCCATTTGGATTGATGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCTACAATTAATGTCAGTAAGTTCTAGATGTTGTTTTTACAACTCACAAAAATGTAGGAAGTCCAACGCATTGCTTCTATTCTCAACAGTAACCTATTTCGTCAACTTGAAGAGGATACAGTTATCGATGGCCAGCCCGTGTCTGCTGGAGCACTTGTTACCGTTCAACTCTCTGCTCTTCATACCGATGAAGCCGTGTTCAAGAATCATACCAAGTTTGACCCGAAGAGTCTCATGAAAAACAGAAATTTGGAAAAGAATTTGATCCCATTTGGTATTGGTAAGCGATCCTGTCCCGGGGAGTCGTTGGCTAGAGCAGAGTTGTATTTGGTAAGTTAACTAATCTTGTTCACATGATTTTGTTTTTCGGAGAACGCACTTAGGTTCACAACAGCGTGAGCATTAGACCCACTAGCTCGACACACCGAAAGCCTTGAATAGTTAAAAGACTTTTCTCAGATAACCGGAAACCTGATCCTGGACTTTGATCTGGAACCCGTTGGACCAGCGCCAGAAATCAAGACAACTGCTCCATTTGGATTGATGAAGAGACCTCCGAGCTATGATATAAGATTTGTTCCGATTGAAAAGTGAATTTCTCCCTGACGGAAGTTTTCTAGTTTTGTTCATGTATAAAACACTTTCTTTTTTATTTCAAAAGTATGAGAATAGGACAATGTTACGAGCATAATTTATGGTATTAGCGCTAATGTTGAACATTTTTGATTTTTCTGTTCAAAATGAACAAATTTCGCAACATTTTTTGCAAAAAATCATTGGCGGAATTTGAGAGTCTGAAGCCGGAAGTGAAACTGATTTTCCGGAAGTCGGAAGTCGGAAGACGGAAGAAAAATTTCGAACTAGGAAGTCGGAAGTCGGAATTCCTGACAACTCTGAGCTGCACCCTCCCTCCTTCATAAAGCTTTTCAAAATTTTCTCTAAATTGGCTCATTCATAGAATCAAGAATGAGCTTTTGCGTAACAATAGTCGCTACTTC</canonical>
            <polymorphic>ATGCTACAATTAATGTCAGTAAGTTCTAGATGTTGTTTTTACAACTCACAAAAATGTAGGAAGTCCAACGCATTGCTTCTATTCTCAACAGTAACCTATTTCGTCAACTTGAAGAGGATACAGTTATCGATGGCCAGCCCGTGTCTGCTGGAGCACTTGTTACCGTTCAACTCTCTGCTCTTCATACCGATGAAGCCGTGTTCAAGAATCATACCAAGTTTGACCCGAAGAGTCTCATGAAAAACAGAAATTTGGAAAAGAATTTGATCCCATTTGGTATTGGTAAGCGATCCTGTCCCGGGGAGTCGTTGGCTAGAGCAGAGTTGTATTTGGTAAGTTAACTAATCTTGTTCACATGATTTTGTTTTTCGGAGAACGCACTTAGGTTCACAACAGCGTGAGCATTAGACCCACTAGCTCGACACACCGAAAGCCTTGAATAGTTAAAAGACTTTTCTCAGATAACCGGAAACCTGATCCTGGACTTTGATCTGGAACCMGTTGGACCAGCGCCAGAAATCAAGACAACTGCTCCATTTGGATTGATGAAGAGACCTCCGAGCTATGATATAAGATTTGTTCCGATTGAAAAGTGAATTTCTCCCTGACGGAAGTTTTCTAGTTTTGTTCATGTATAAAACACTTTCTTTTTTATTTCAAAAGTATGAGAATAGGACAATGTTACGAGCATAATTTATGGTATTAGCGCTAATGTTGAACATTTTTGATTTTTCTGTTCAAAATGAACAAATTTCGCAACATTTTTTGCAAAAAATCATTGGCGGAATTTGAGAGTCTGAAGCCGGAAGTGAAACTGATTTTCCGGAAGTCGGAAGTCGGAAGACGGAAGAAAAATTTCGAACTAGGAAGTCGGAAGTCGGAATTCCTGACAACTCTGAGCTGCACCCTCCCTCCTTCATAAAGCTTTTCAAAATTTTCTCTAAATTGGCTCATTCATAGAATCAAGAATGAGCTTTTGCGTAACAATAGTCGCTACTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGTTCACATGATTTTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCAATCGGAACAAATCTTATATC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTTGTTCACATGATTTTGTTTTTCGGAGAACGCACTTAGGTTCACAACAGCGTGAGCATTAGACCCACTAGCTCGACACACCGAAAGCCTTGAATAGTTAAAAGACTTTTCTCAGATAACCGGAAACCTGATCCTGGACTTTGATCTGGAACCCGTTGGACCAGCGCCAGAAATCAAGACAACTGCTCCATTTGGATTGATGAAGAGACCTCCGAGCTATGATATAAGATTTGTTCCGATTGA</canonical_amplicon>
		<polymorphic_amplicon>CTTGTTCACATGATTTTGTTTTTCGGAGAACGCACTTAGGTTCACAACAGCGTGAGCATTAGACCCACTAGCTCGACACACCGAAAGCCTTGAATAGTTAAAAGACTTTTCTCAGATAACCGGAAACCTGATCCTGGACTTTGATCTGGAACCMGTTGGACCAGCGCCAGAAATCAAGACAACTGCTCCATTTGGATTGATGAAGAGACCTCCGAGCTATGATATAAGATTTGTTCCGATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26829</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>671608</contig_pos>
        <strand>+</strand>
        <context>CAAGACAACT[A/G]CTCCATTTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGACTTTGATCTGGAACCCGTTGGACCAGCGCCAGAAATCAAGACAACT</left_flank>
        <right_flank>CTCCATTTGGATTGATGAAGAGACCTCCGAGCTATGATATAAGATTTGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGTTTTTACAACTCACAAAAATGTAGGAAGTCCAACGCATTGCTTCTATTCTCAACAGTAACCTATTTCGTCAACTTGAAGAGGATACAGTTATCGATGGCCAGCCCGTGTCTGCTGGAGCACTTGTTACCGTTCAACTCTCTGCTCTTCATACCGATGAAGCCGTGTTCAAGAATCATACCAAGTTTGACCCGAAGAGTCTCATGAAAAACAGAAATTTGGAAAAGAATTTGATCCCATTTGGTATTGGTAAGCGATCCTGTCCCGGGGAGTCGTTGGCTAGAGCAGAGTTGTATTTGGTAAGTTAACTAATCTTGTTCACATGATTTTGTTTTTCGGAGAACGCACTTAGGTTCACAACAGCGTGAGCATTAGACCCACTAGCTCGACACACCGAAAGCCTTGAATAGTTAAAAGACTTTTCTCAGATAACCGGAAACCTGATCCTGGACTTTGATCTGGAACCCGTTGGACCAGCGCCAGAAATCAAGACAACTGCTCCATTTGGATTGATGAAGAGACCTCCGAGCTATGATATAAGATTTGTTCCGATTGAAAAGTGAATTTCTCCCTGACGGAAGTTTTCTAGTTTTGTTCATGTATAAAACACTTTCTTTTTTATTTCAAAAGTATGAGAATAGGACAATGTTACGAGCATAATTTATGGTATTAGCGCTAATGTTGAACATTTTTGATTTTTCTGTTCAAAATGAACAAATTTCGCAACATTTTTTGCAAAAAATCATTGGCGGAATTTGAGAGTCTGAAGCCGGAAGTGAAACTGATTTTCCGGAAGTCGGAAGTCGGAAGACGGAAGAAAAATTTCGAACTAGGAAGTCGGAAGTCGGAATTCCTGACAACTCTGAGCTGCACCCTCCCTCCTTCATAAAGCTTTTCAAAATTTTCTCTAAATTGGCTCATTCATAGAATCAAGAATGAGCTTTTGCGTAACAATAGTCGCTACTTCGAGAAAAATTGATCGGAAATAATGCGATTTA</canonical>
            <polymorphic>GTTGTTTTTACAACTCACAAAAATGTAGGAAGTCCAACGCATTGCTTCTATTCTCAACAGTAACCTATTTCGTCAACTTGAAGAGGATACAGTTATCGATGGCCAGCCCGTGTCTGCTGGAGCACTTGTTACCGTTCAACTCTCTGCTCTTCATACCGATGAAGCCGTGTTCAAGAATCATACCAAGTTTGACCCGAAGAGTCTCATGAAAAACAGAAATTTGGAAAAGAATTTGATCCCATTTGGTATTGGTAAGCGATCCTGTCCCGGGGAGTCGTTGGCTAGAGCAGAGTTGTATTTGGTAAGTTAACTAATCTTGTTCACATGATTTTGTTTTTCGGAGAACGCACTTAGGTTCACAACAGCGTGAGCATTAGACCCACTAGCTCGACACACCGAAAGCCTTGAATAGTTAAAAGACTTTTCTCAGATAACCGGAAACCTGATCCTGGACTTTGATCTGGAACCCGTTGGACCAGCGCCAGAAATCAAGACAACTRCTCCATTTGGATTGATGAAGAGACCTCCGAGCTATGATATAAGATTTGTTCCGATTGAAAAGTGAATTTCTCCCTGACGGAAGTTTTCTAGTTTTGTTCATGTATAAAACACTTTCTTTTTTATTTCAAAAGTATGAGAATAGGACAATGTTACGAGCATAATTTATGGTATTAGCGCTAATGTTGAACATTTTTGATTTTTCTGTTCAAAATGAACAAATTTCGCAACATTTTTTGCAAAAAATCATTGGCGGAATTTGAGAGTCTGAAGCCGGAAGTGAAACTGATTTTCCGGAAGTCGGAAGTCGGAAGACGGAAGAAAAATTTCGAACTAGGAAGTCGGAAGTCGGAATTCCTGACAACTCTGAGCTGCACCCTCCCTCCTTCATAAAGCTTTTCAAAATTTTCTCTAAATTGGCTCATTCATAGAATCAAGAATGAGCTTTTGCGTAACAATAGTCGCTACTTCGAGAAAAATTGATCGGAAATAATGCGATTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGTTCACATGATTTTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCAATCGGAACAAATCTTATATC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTTGTTCACATGATTTTGTTTTTCGGAGAACGCACTTAGGTTCACAACAGCGTGAGCATTAGACCCACTAGCTCGACACACCGAAAGCCTTGAATAGTTAAAAGACTTTTCTCAGATAACCGGAAACCTGATCCTGGACTTTGATCTGGAACCCGTTGGACCAGCGCCAGAAATCAAGACAACTGCTCCATTTGGATTGATGAAGAGACCTCCGAGCTATGATATAAGATTTGTTCCGATTGA</canonical_amplicon>
		<polymorphic_amplicon>CTTGTTCACATGATTTTGTTTTTCGGAGAACGCACTTAGGTTCACAACAGCGTGAGCATTAGACCCACTAGCTCGACACACCGAAAGCCTTGAATAGTTAAAAGACTTTTCTCAGATAACCGGAAACCTGATCCTGGACTTTGATCTGGAACCCGTTGGACCAGCGCCAGAAATCAAGACAACTRCTCCATTTGGATTGATGAAGAGACCTCCGAGCTATGATATAAGATTTGTTCCGATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26830</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>671686</contig_pos>
        <strand>+</strand>
        <context>TTCTCCCTGA[A/C]GGAAGTTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGAGCTATGATATAAGATTTGTTCCGATTGAAAAGTGAATTTCTCCCTGA</left_flank>
        <right_flank>GGAAGTTTTCTAGTTTTGTTCATGTATAAAACACTTTCTTTTTTATTTCA</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAGAGGATACAGTTATCGATGGCCAGCCCGTGTCTGCTGGAGCACTTGTTACCGTTCAACTCTCTGCTCTTCATACCGATGAAGCCGTGTTCAAGAATCATACCAAGTTTGACCCGAAGAGTCTCATGAAAAACAGAAATTTGGAAAAGAATTTGATCCCATTTGGTATTGGTAAGCGATCCTGTCCCGGGGAGTCGTTGGCTAGAGCAGAGTTGTATTTGGTAAGTTAACTAATCTTGTTCACATGATTTTGTTTTTCGGAGAACGCACTTAGGTTCACAACAGCGTGAGCATTAGACCCACTAGCTCGACACACCGAAAGCCTTGAATAGTTAAAAGACTTTTCTCAGATAACCGGAAACCTGATCCTGGACTTTGATCTGGAACCCGTTGGACCAGCGCCAGAAATCAAGACAACTGCTCCATTTGGATTGATGAAGAGACCTCCGAGCTATGATATAAGATTTGTTCCGATTGAAAAGTGAATTTCTCCCTGACGGAAGTTTTCTAGTTTTGTTCATGTATAAAACACTTTCTTTTTTATTTCAAAAGTATGAGAATAGGACAATGTTACGAGCATAATTTATGGTATTAGCGCTAATGTTGAACATTTTTGATTTTTCTGTTCAAAATGAACAAATTTCGCAACATTTTTTGCAAAAAATCATTGGCGGAATTTGAGAGTCTGAAGCCGGAAGTGAAACTGATTTTCCGGAAGTCGGAAGTCGGAAGACGGAAGAAAAATTTCGAACTAGGAAGTCGGAAGTCGGAATTCCTGACAACTCTGAGCTGCACCCTCCCTCCTTCATAAAGCTTTTCAAAATTTTCTCTAAATTGGCTCATTCATAGAATCAAGAATGAGCTTTTGCGTAACAATAGTCGCTACTTCGAGAAAAATTGATCGGAAATAATGCGATTTACGCGAGTAAGACATAAGGAAGACACATATCGTACAAGAAAGTAAGAAACATTTATTGGATAAAAACGTTCTAAAAAAT</canonical>
            <polymorphic>TGAAGAGGATACAGTTATCGATGGCCAGCCCGTGTCTGCTGGAGCACTTGTTACCGTTCAACTCTCTGCTCTTCATACCGATGAAGCCGTGTTCAAGAATCATACCAAGTTTGACCCGAAGAGTCTCATGAAAAACAGAAATTTGGAAAAGAATTTGATCCCATTTGGTATTGGTAAGCGATCCTGTCCCGGGGAGTCGTTGGCTAGAGCAGAGTTGTATTTGGTAAGTTAACTAATCTTGTTCACATGATTTTGTTTTTCGGAGAACGCACTTAGGTTCACAACAGCGTGAGCATTAGACCCACTAGCTCGACACACCGAAAGCCTTGAATAGTTAAAAGACTTTTCTCAGATAACCGGAAACCTGATCCTGGACTTTGATCTGGAACCCGTTGGACCAGCGCCAGAAATCAAGACAACTGCTCCATTTGGATTGATGAAGAGACCTCCGAGCTATGATATAAGATTTGTTCCGATTGAAAAGTGAATTTCTCCCTGAMGGAAGTTTTCTAGTTTTGTTCATGTATAAAACACTTTCTTTTTTATTTCAAAAGTATGAGAATAGGACAATGTTACGAGCATAATTTATGGTATTAGCGCTAATGTTGAACATTTTTGATTTTTCTGTTCAAAATGAACAAATTTCGCAACATTTTTTGCAAAAAATCATTGGCGGAATTTGAGAGTCTGAAGCCGGAAGTGAAACTGATTTTCCGGAAGTCGGAAGTCGGAAGACGGAAGAAAAATTTCGAACTAGGAAGTCGGAAGTCGGAATTCCTGACAACTCTGAGCTGCACCCTCCCTCCTTCATAAAGCTTTTCAAAATTTTCTCTAAATTGGCTCATTCATAGAATCAAGAATGAGCTTTTGCGTAACAATAGTCGCTACTTCGAGAAAAATTGATCGGAAATAATGCGATTTACGCGAGTAAGACATAAGGAAGACACATATCGTACAAGAAAGTAAGAAACATTTATTGGATAAAAACGTTCTAAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGCCTTGAATAGTTAAAAGAC</pcr_primer_p1>
		<pcr_primer_p2>CATTGTCCTATTCTCATACTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GAAAGCCTTGAATAGTTAAAAGACTTTTCTCAGATAACCGGAAACCTGATCCTGGACTTTGATCTGGAACCCGTTGGACCAGCGCCAGAAATCAAGACAACTGCTCCATTTGGATTGATGAAGAGACCTCCGAGCTATGATATAAGATTTGTTCCGATTGAAAAGTGAATTTCTCCCTGACGGAAGTTTTCTAGTTTTGTTCATGTATAAAACACTTTCTTTTTTATTTCAAAAGTATGAGAATAGGACAATG</canonical_amplicon>
		<polymorphic_amplicon>GAAAGCCTTGAATAGTTAAAAGACTTTTCTCAGATAACCGGAAACCTGATCCTGGACTTTGATCTGGAACCCGTTGGACCAGCGCCAGAAATCAAGACAACTGCTCCATTTGGATTGATGAAGAGACCTCCGAGCTATGATATAAGATTTGTTCCGATTGAAAAGTGAATTTCTCCCTGAMGGAAGTTTTCTAGTTTTGTTCATGTATAAAACACTTTCTTTTTTATTTCAAAAGTATGAGAATAGGACAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26831</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>671711</contig_pos>
        <strand>+</strand>
        <context>TTTGTTCATG[A/T]ATAWAACACT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATTGAAAAGTGAATTTCTCCCTGACGGAAGTTTTCTAGTTTTGTTCATG</left_flank>
        <right_flank>ATAAAACACTTTCTTTTTTATTTCAAAAGTATGAGAATAGGACAATGTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCCCGTGTCTGCTGGAGCACTTGTTACCGTTCAACTCTCTGCTCTTCATACCGATGAAGCCGTGTTCAAGAATCATACCAAGTTTGACCCGAAGAGTCTCATGAAAAACAGAAATTTGGAAAAGAATTTGATCCCATTTGGTATTGGTAAGCGATCCTGTCCCGGGGAGTCGTTGGCTAGAGCAGAGTTGTATTTGGTAAGTTAACTAATCTTGTTCACATGATTTTGTTTTTCGGAGAACGCACTTAGGTTCACAACAGCGTGAGCATTAGACCCACTAGCTCGACACACCGAAAGCCTTGAATAGTTAAAAGACTTTTCTCAGATAACCGGAAACCTGATCCTGGACTTTGATCTGGAACCCGTTGGACCAGCGCCAGAAATCAAGACAACTGCTCCATTTGGATTGATGAAGAGACCTCCGAGCTATGATATAAGATTTGTTCCGATTGAAAAGTGAATTTCTCCCTGACGGAAGTTTTCTAGTTTTGTTCATGTATAAAACACTTTCTTTTTTATTTCAAAAGTATGAGAATAGGACAATGTTACGAGCATAATTTATGGTATTAGCGCTAATGTTGAACATTTTTGATTTTTCTGTTCAAAATGAACAAATTTCGCAACATTTTTTGCAAAAAATCATTGGCGGAATTTGAGAGTCTGAAGCCGGAAGTGAAACTGATTTTCCGGAAGTCGGAAGTCGGAAGACGGAAGAAAAATTTCGAACTAGGAAGTCGGAAGTCGGAATTCCTGACAACTCTGAGCTGCACCCTCCCTCCTTCATAAAGCTTTTCAAAATTTTCTCTAAATTGGCTCATTCATAGAATCAAGAATGAGCTTTTGCGTAACAATAGTCGCTACTTCGAGAAAAATTGATCGGAAATAATGCGATTTACGCGAGTAAGACATAAGGAAGACACATATCGTACAAGAAAGTAAGAAACATTTATTGGATAAAAACGTTCTAAAAAATGTCCTGAACCATTTCTGGTTCCGAA</canonical>
            <polymorphic>CAGCCCGTGTCTGCTGGAGCACTTGTTACCGTTCAACTCTCTGCTCTTCATACCGATGAAGCCGTGTTCAAGAATCATACCAAGTTTGACCCGAAGAGTCTCATGAAAAACAGAAATTTGGAAAAGAATTTGATCCCATTTGGTATTGGTAAGCGATCCTGTCCCGGGGAGTCGTTGGCTAGAGCAGAGTTGTATTTGGTAAGTTAACTAATCTTGTTCACATGATTTTGTTTTTCGGAGAACGCACTTAGGTTCACAACAGCGTGAGCATTAGACCCACTAGCTCGACACACCGAAAGCCTTGAATAGTTAAAAGACTTTTCTCAGATAACCGGAAACCTGATCCTGGACTTTGATCTGGAACCCGTTGGACCAGCGCCAGAAATCAAGACAACTGCTCCATTTGGATTGATGAAGAGACCTCCGAGCTATGATATAAGATTTGTTCCGATTGAAAAGTGAATTTCTCCCTGACGGAAGTTTTCTAGTTTTGTTCATGWATAAAACACTTTCTTTTTTATTTCAAAAGTATGAGAATAGGACAATGTTACGAGCATAATTTATGGTATTAGCGCTAATGTTGAACATTTTTGATTTTTCTGTTCAAAATGAACAAATTTCGCAACATTTTTTGCAAAAAATCATTGGCGGAATTTGAGAGTCTGAAGCCGGAAGTGAAACTGATTTTCCGGAAGTCGGAAGTCGGAAGACGGAAGAAAAATTTCGAACTAGGAAGTCGGAAGTCGGAATTCCTGACAACTCTGAGCTGCACCCTCCCTCCTTCATAAAGCTTTTCAAAATTTTCTCTAAATTGGCTCATTCATAGAATCAAGAATGAGCTTTTGCGTAACAATAGTCGCTACTTCGAGAAAAATTGATCGGAAATAATGCGATTTACGCGAGTAAGACATAAGGAAGACACATATCGTACAAGAAAGTAAGAAACATTTATTGGATAAAAACGTTCTAAAAAATGTCCTGAACCATTTCTGGTTCCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGATTGAAAAGTGAATTTCT</pcr_primer_p1>
		<pcr_primer_p2>CGATATGTGTCTTCCTTATGTCT</pcr_primer_p2>
		<pcr_amplicon_size>481</pcr_amplicon_size>
		<canonical_amplicon>CCGATTGAAAAGTGAATTTCTCCCTGACGGAAGTTTTCTAGTTTTGTTCATGTATAAAACACTTTCTTTTTTATTTCAAAAGTATGAGAATAGGACAATGTTACGAGCATAATTTATGGTATTAGCGCTAATGTTGAACATTTTTGATTTTTCTGTTCAAAATGAACAAATTTCGCAACATTTTTTGCAAAAAATCATTGGCGGAATTTGAGAGTCTGAAGCCGGAAGTGAAACTGATTTTCCGGAAGTCGGAAGTCGGAAGACGGAAGAAAAATTTCGAACTAGGAAGTCGGAAGTCGGAATTCCTGACAACTCTGAGCTGCACCCTCCCTCCTTCATAAAGCTTTTCAAAATTTTCTCTAAATTGGCTCATTCATAGAATCAAGAATGAGCTTTTGCGTAACAATAGTCGCTACTTCGAGAAAAATTGATCGGAAATAATGCGATTTACGCGAGTAAGACATAAGGAAGACACATATCG</canonical_amplicon>
		<polymorphic_amplicon>CCGATTGAAAAGTGAATTTCTCCCTGACGGAAGTTTTCTAGTTTTGTTCATGWATAAAACACTTTCTTTTTTATTTCAAAAGTATGAGAATAGGACAATGTTACGAGCATAATTTATGGTATTAGCGCTAATGTTGAACATTTTTGATTTTTCTGTTCAAAATGAACAAATTTCGCAACATTTTTTGCAAAAAATCATTGGCGGAATTTGAGAGTCTGAAGCCGGAAGTGAAACTGATTTTCCGGAAGTCGGAAGTCGGAAGACGGAAGAAAAATTTCGAACTAGGAAGTCGGAAGTCGGAATTCCTGACAACTCTGAGCTGCACCCTCCCTCCTTCATAAAGCTTTTCAAAATTTTCTCTAAATTGGCTCATTCATAGAATCAAGAATGAGCTTTTGCGTAACAATAGTCGCTACTTCGAGAAAAATTGATCGGAAATAATGCGATTTACGCGAGTAAGACATAAGGAAGACACATATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26832</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>671715</contig_pos>
        <strand>+</strand>
        <context>TTCATGWATA[A/T]AACACTTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAAGTGAATTTCTCCCTGACGGAAGTTTTCTAGTTTTGTTCATGTATA</left_flank>
        <right_flank>AACACTTTCTTTTTTATTTCAAAAGTATGAGAATAGGACAATGTTACGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGTGTCTGCTGGAGCACTTGTTACCGTTCAACTCTCTGCTCTTCATACCGATGAAGCCGTGTTCAAGAATCATACCAAGTTTGACCCGAAGAGTCTCATGAAAAACAGAAATTTGGAAAAGAATTTGATCCCATTTGGTATTGGTAAGCGATCCTGTCCCGGGGAGTCGTTGGCTAGAGCAGAGTTGTATTTGGTAAGTTAACTAATCTTGTTCACATGATTTTGTTTTTCGGAGAACGCACTTAGGTTCACAACAGCGTGAGCATTAGACCCACTAGCTCGACACACCGAAAGCCTTGAATAGTTAAAAGACTTTTCTCAGATAACCGGAAACCTGATCCTGGACTTTGATCTGGAACCCGTTGGACCAGCGCCAGAAATCAAGACAACTGCTCCATTTGGATTGATGAAGAGACCTCCGAGCTATGATATAAGATTTGTTCCGATTGAAAAGTGAATTTCTCCCTGACGGAAGTTTTCTAGTTTTGTTCATGTATAAAACACTTTCTTTTTTATTTCAAAAGTATGAGAATAGGACAATGTTACGAGCATAATTTATGGTATTAGCGCTAATGTTGAACATTTTTGATTTTTCTGTTCAAAATGAACAAATTTCGCAACATTTTTTGCAAAAAATCATTGGCGGAATTTGAGAGTCTGAAGCCGGAAGTGAAACTGATTTTCCGGAAGTCGGAAGTCGGAAGACGGAAGAAAAATTTCGAACTAGGAAGTCGGAAGTCGGAATTCCTGACAACTCTGAGCTGCACCCTCCCTCCTTCATAAAGCTTTTCAAAATTTTCTCTAAATTGGCTCATTCATAGAATCAAGAATGAGCTTTTGCGTAACAATAGTCGCTACTTCGAGAAAAATTGATCGGAAATAATGCGATTTACGCGAGTAAGACATAAGGAAGACACATATCGTACAAGAAAGTAAGAAACATTTATTGGATAAAAACGTTCTAAAAAATGTCCTGAACCATTTCTGGTTCCGAAAACT</canonical>
            <polymorphic>CCGTGTCTGCTGGAGCACTTGTTACCGTTCAACTCTCTGCTCTTCATACCGATGAAGCCGTGTTCAAGAATCATACCAAGTTTGACCCGAAGAGTCTCATGAAAAACAGAAATTTGGAAAAGAATTTGATCCCATTTGGTATTGGTAAGCGATCCTGTCCCGGGGAGTCGTTGGCTAGAGCAGAGTTGTATTTGGTAAGTTAACTAATCTTGTTCACATGATTTTGTTTTTCGGAGAACGCACTTAGGTTCACAACAGCGTGAGCATTAGACCCACTAGCTCGACACACCGAAAGCCTTGAATAGTTAAAAGACTTTTCTCAGATAACCGGAAACCTGATCCTGGACTTTGATCTGGAACCCGTTGGACCAGCGCCAGAAATCAAGACAACTGCTCCATTTGGATTGATGAAGAGACCTCCGAGCTATGATATAAGATTTGTTCCGATTGAAAAGTGAATTTCTCCCTGACGGAAGTTTTCTAGTTTTGTTCATGTATAWAACACTTTCTTTTTTATTTCAAAAGTATGAGAATAGGACAATGTTACGAGCATAATTTATGGTATTAGCGCTAATGTTGAACATTTTTGATTTTTCTGTTCAAAATGAACAAATTTCGCAACATTTTTTGCAAAAAATCATTGGCGGAATTTGAGAGTCTGAAGCCGGAAGTGAAACTGATTTTCCGGAAGTCGGAAGTCGGAAGACGGAAGAAAAATTTCGAACTAGGAAGTCGGAAGTCGGAATTCCTGACAACTCTGAGCTGCACCCTCCCTCCTTCATAAAGCTTTTCAAAATTTTCTCTAAATTGGCTCATTCATAGAATCAAGAATGAGCTTTTGCGTAACAATAGTCGCTACTTCGAGAAAAATTGATCGGAAATAATGCGATTTACGCGAGTAAGACATAAGGAAGACACATATCGTACAAGAAAGTAAGAAACATTTATTGGATAAAAACGTTCTAAAAAATGTCCTGAACCATTTCTGGTTCCGAAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGATTGAAAAGTGAATTTCT</pcr_primer_p1>
		<pcr_primer_p2>CGATATGTGTCTTCCTTATGTCT</pcr_primer_p2>
		<pcr_amplicon_size>481</pcr_amplicon_size>
		<canonical_amplicon>CCGATTGAAAAGTGAATTTCTCCCTGACGGAAGTTTTCTAGTTTTGTTCATGTATAAAACACTTTCTTTTTTATTTCAAAAGTATGAGAATAGGACAATGTTACGAGCATAATTTATGGTATTAGCGCTAATGTTGAACATTTTTGATTTTTCTGTTCAAAATGAACAAATTTCGCAACATTTTTTGCAAAAAATCATTGGCGGAATTTGAGAGTCTGAAGCCGGAAGTGAAACTGATTTTCCGGAAGTCGGAAGTCGGAAGACGGAAGAAAAATTTCGAACTAGGAAGTCGGAAGTCGGAATTCCTGACAACTCTGAGCTGCACCCTCCCTCCTTCATAAAGCTTTTCAAAATTTTCTCTAAATTGGCTCATTCATAGAATCAAGAATGAGCTTTTGCGTAACAATAGTCGCTACTTCGAGAAAAATTGATCGGAAATAATGCGATTTACGCGAGTAAGACATAAGGAAGACACATATCG</canonical_amplicon>
		<polymorphic_amplicon>CCGATTGAAAAGTGAATTTCTCCCTGACGGAAGTTTTCTAGTTTTGTTCATGTATAWAACACTTTCTTTTTTATTTCAAAAGTATGAGAATAGGACAATGTTACGAGCATAATTTATGGTATTAGCGCTAATGTTGAACATTTTTGATTTTTCTGTTCAAAATGAACAAATTTCGCAACATTTTTTGCAAAAAATCATTGGCGGAATTTGAGAGTCTGAAGCCGGAAGTGAAACTGATTTTCCGGAAGTCGGAAGTCGGAAGACGGAAGAAAAATTTCGAACTAGGAAGTCGGAAGTCGGAATTCCTGACAACTCTGAGCTGCACCCTCCCTCCTTCATAAAGCTTTTCAAAATTTTCTCTAAATTGGCTCATTCATAGAATCAAGAATGAGCTTTTGCGTAACAATAGTCGCTACTTCGAGAAAAATTGATCGGAAATAATGCGATTTACGCGAGTAAGACATAAGGAAGACACATATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26833</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>671728</contig_pos>
        <strand>+</strand>
        <context>CACTTTCTTT[G/T]TTATTTCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCCCTGACGGAAGTTTTCTAGTTTTGTTCATGTATAAAACACTTTCTTT</left_flank>
        <right_flank>TTATTTCAAAAGTATGAGAATAGGACAATGTTACGAGCATAATTTATGGT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCACTTGTTACCGTTCAACTCTCTGCTCTTCATACCGATGAAGCCGTGTTCAAGAATCATACCAAGTTTGACCCGAAGAGTCTCATGAAAAACAGAAATTTGGAAAAGAATTTGATCCCATTTGGTATTGGTAAGCGATCCTGTCCCGGGGAGTCGTTGGCTAGAGCAGAGTTGTATTTGGTAAGTTAACTAATCTTGTTCACATGATTTTGTTTTTCGGAGAACGCACTTAGGTTCACAACAGCGTGAGCATTAGACCCACTAGCTCGACACACCGAAAGCCTTGAATAGTTAAAAGACTTTTCTCAGATAACCGGAAACCTGATCCTGGACTTTGATCTGGAACCCGTTGGACCAGCGCCAGAAATCAAGACAACTGCTCCATTTGGATTGATGAAGAGACCTCCGAGCTATGATATAAGATTTGTTCCGATTGAAAAGTGAATTTCTCCCTGACGGAAGTTTTCTAGTTTTGTTCATGTATAAAACACTTTCTTTTTTATTTCAAAAGTATGAGAATAGGACAATGTTACGAGCATAATTTATGGTATTAGCGCTAATGTTGAACATTTTTGATTTTTCTGTTCAAAATGAACAAATTTCGCAACATTTTTTGCAAAAAATCATTGGCGGAATTTGAGAGTCTGAAGCCGGAAGTGAAACTGATTTTCCGGAAGTCGGAAGTCGGAAGACGGAAGAAAAATTTCGAACTAGGAAGTCGGAAGTCGGAATTCCTGACAACTCTGAGCTGCACCCTCCCTCCTTCATAAAGCTTTTCAAAATTTTCTCTAAATTGGCTCATTCATAGAATCAAGAATGAGCTTTTGCGTAACAATAGTCGCTACTTCGAGAAAAATTGATCGGAAATAATGCGATTTACGCGAGTAAGACATAAGGAAGACACATATCGTACAAGAAAGTAAGAAACATTTATTGGATAAAAACGTTCTAAAAAATGTCCTGAACCATTTCTGGTTCCGAAAACTGAACATTGAAAAT</canonical>
            <polymorphic>AGCACTTGTTACCGTTCAACTCTCTGCTCTTCATACCGATGAAGCCGTGTTCAAGAATCATACCAAGTTTGACCCGAAGAGTCTCATGAAAAACAGAAATTTGGAAAAGAATTTGATCCCATTTGGTATTGGTAAGCGATCCTGTCCCGGGGAGTCGTTGGCTAGAGCAGAGTTGTATTTGGTAAGTTAACTAATCTTGTTCACATGATTTTGTTTTTCGGAGAACGCACTTAGGTTCACAACAGCGTGAGCATTAGACCCACTAGCTCGACACACCGAAAGCCTTGAATAGTTAAAAGACTTTTCTCAGATAACCGGAAACCTGATCCTGGACTTTGATCTGGAACCCGTTGGACCAGCGCCAGAAATCAAGACAACTGCTCCATTTGGATTGATGAAGAGACCTCCGAGCTATGATATAAGATTTGTTCCGATTGAAAAGTGAATTTCTCCCTGACGGAAGTTTTCTAGTTTTGTTCATGTATAAAACACTTTCTTTKTTATTTCAAAAGTATGAGAATAGGACAATGTTACGAGCATAATTTATGGTATTAGCGCTAATGTTGAACATTTTTGATTTTTCTGTTCAAAATGAACAAATTTCGCAACATTTTTTGCAAAAAATCATTGGCGGAATTTGAGAGTCTGAAGCCGGAAGTGAAACTGATTTTCCGGAAGTCGGAAGTCGGAAGACGGAAGAAAAATTTCGAACTAGGAAGTCGGAAGTCGGAATTCCTGACAACTCTGAGCTGCACCCTCCCTCCTTCATAAAGCTTTTCAAAATTTTCTCTAAATTGGCTCATTCATAGAATCAAGAATGAGCTTTTGCGTAACAATAGTCGCTACTTCGAGAAAAATTGATCGGAAATAATGCGATTTACGCGAGTAAGACATAAGGAAGACACATATCGTACAAGAAAGTAAGAAACATTTATTGGATAAAAACGTTCTAAAAAATGTCCTGAACCATTTCTGGTTCCGAAAACTGAACATTGAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGATTGAAAAGTGAATTTCT</pcr_primer_p1>
		<pcr_primer_p2>CGATATGTGTCTTCCTTATGTCT</pcr_primer_p2>
		<pcr_amplicon_size>481</pcr_amplicon_size>
		<canonical_amplicon>CCGATTGAAAAGTGAATTTCTCCCTGACGGAAGTTTTCTAGTTTTGTTCATGTATAAAACACTTTCTTTTTTATTTCAAAAGTATGAGAATAGGACAATGTTACGAGCATAATTTATGGTATTAGCGCTAATGTTGAACATTTTTGATTTTTCTGTTCAAAATGAACAAATTTCGCAACATTTTTTGCAAAAAATCATTGGCGGAATTTGAGAGTCTGAAGCCGGAAGTGAAACTGATTTTCCGGAAGTCGGAAGTCGGAAGACGGAAGAAAAATTTCGAACTAGGAAGTCGGAAGTCGGAATTCCTGACAACTCTGAGCTGCACCCTCCCTCCTTCATAAAGCTTTTCAAAATTTTCTCTAAATTGGCTCATTCATAGAATCAAGAATGAGCTTTTGCGTAACAATAGTCGCTACTTCGAGAAAAATTGATCGGAAATAATGCGATTTACGCGAGTAAGACATAAGGAAGACACATATCG</canonical_amplicon>
		<polymorphic_amplicon>CCGATTGAAAAGTGAATTTCTCCCTGACGGAAGTTTTCTAGTTTTGTTCATGTATAAAACACTTTCTTTKTTATTTCAAAAGTATGAGAATAGGACAATGTTACGAGCATAATTTATGGTATTAGCGCTAATGTTGAACATTTTTGATTTTTCTGTTCAAAATGAACAAATTTCGCAACATTTTTTGCAAAAAATCATTGGCGGAATTTGAGAGTCTGAAGCCGGAAGTGAAACTGATTTTCCGGAAGTCGGAAGTCGGAAGACGGAAGAAAAATTTCGAACTAGGAAGTCGGAAGTCGGAATTCCTGACAACTCTGAGCTGCACCCTCCCTCCTTCATAAAGCTTTTCAAAATTTTCTCTAAATTGGCTCATTCATAGAATCAAGAATGAGCTTTTGCGTAACAATAGTCGCTACTTCGAGAAAAATTGATCGGAAATAATGCGATTTACGCGAGTAAGACATAAGGAAGACACATATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26834</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>671910</contig_pos>
        <strand></strand>
        <context>ccggaagtcg[G/A]aagtcggaag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGGAATTTGAGAGTCTGAAGCCGGAAGTGAAACTGATTTTCCGGAAGTCG</left_flank>
        <right_flank>AAGTCGGAAGACGGAAGAAAAATTTCGAACTAGGAAGTCGGAAGTCGGAA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAGTTAACTAATCTTGTTCACATGATTTTGTTTTTCGGAGAACGCACTTAGGTTCACAACAGCGTGAGCATTAGACCCACTAGCTCGACACACCGAAAGCCTTGAATAGTTAAAAGACTTTTCTCAGATAACCGGAAACCTGATCCTGGACTTTGATCTGGAACCCGTTGGACCAGCGCCAGAAATCAAGACAACTGCTCCATTTGGATTGATGAAGAGACCTCCGAGCTATGATATAAGATTTGTTCCGATTGAAAAGTGAATTTCTCCCTGACGGAAGTTTTCTAGTTTTGTTCATGTATAAAACACTTTCTTTTTTATTTCAAAAGTATGAGAATAGGACAATGTTACGAGCATAATTTATGGTATTAGCGCTAATGTTGAACATTTTTGATTTTTCTGTTCAAAATGAACAAATTTCGCAACATTTTTTGCAAAAAATCATTGGCGGAATTTGAGAGTCTGAAGCCGGAAGTGAAACTGATTTTCCGGAAGTCGGAAGTCGGAAGACGGAAGAAAAATTTCGAACTAGGAAGTCGGAAGTCGGAATTCCTGACAACTCTGAGCTGCACCCTCCCTCCTTCATAAAGCTTTTCAAAATTTTCTCTAAATTGGCTCATTCATAGAATCAAGAATGAGCTTTTGCGTAACAATAGTCGCTACTTCGAGAAAAATTGATCGGAAATAATGCGATTTACGCGAGTAAGACATAAGGAAGACACATATCGTACAAGAAAGTAAGAAACATTTATTGGATAAAAACGTTCTAAAAAATGTCCTGAACCATTTCTGGTTCCGAAAACTGAACATTGAAAATATCAAAGGTTTTAGCGATTTCCAATTTTTCTCTTTTTTCTCTCAATACACCAAAAAGCGAATTATTGACTTTCATCATTTTCACAACTCGATCCGAGTATCTTGGATGACCAATTTGTGTATAATAATCATGTAAATCATCAGCCACAGTTTTCAGCAAATTTTCAGAAATTTCAGCATATT</canonical>
            <polymorphic>TAAGTTAACTAATCTTGTTCACATGATTTTGTTTTTCGGAGAACGCACTTAGGTTCACAACAGCGTGAGCATTAGACCCACTAGCTCGACACACCGAAAGCCTTGAATAGTTAAAAGACTTTTCTCAGATAACCGGAAACCTGATCCTGGACTTTGATCTGGAACCCGTTGGACCAGCGCCAGAAATCAAGACAACTGCTCCATTTGGATTGATGAAGAGACCTCCGAGCTATGATATAAGATTTGTTCCGATTGAAAAGTGAATTTCTCCCTGACGGAAGTTTTCTAGTTTTGTTCATGTATAAAACACTTTCTTTTTTATTTCAAAAGTATGAGAATAGGACAATGTTACGAGCATAATTTATGGTATTAGCGCTAATGTTGAACATTTTTGATTTTTCTGTTCAAAATGAACAAATTTCGCAACATTTTTTGCAAAAAATCATTGGCGGAATTTGAGAGTCTGAAGCCGGAAGTGAAACTGATTTTCCGGAAGTCGRAAGTCGGAAGACGGAAGAAAAATTTCGAACTAGGAAGTCGGAAGTCGGAATTCCTGACAACTCTGAGCTGCACCCTCCCTCCTTCATAAAGCTTTTCAAAATTTTCTCTAAATTGGCTCATTCATAGAATCAAGAATGAGCTTTTGCGTAACAATAGTCGCTACTTCGAGAAAAATTGATCGGAAATAATGCGATTTACGCGAGTAAGACATAAGGAAGACACATATCGTACAAGAAAGTAAGAAACATTTATTGGATAAAAACGTTCTAAAAAATGTCCTGAACCATTTCTGGTTCCGAAAACTGAACATTGAAAATATCAAAGGTTTTAGCGATTTCCAATTTTTCTCTTTTTTCTCTCAATACACCAAAAAGCGAATTATTGACTTTCATCATTTTCACAACTCGATCCGAGTATCTTGGATGACCAATTTGTGTATAATAATCATGTAAATCATCAGCCACAGTTTTCAGCAAATTTTCAGAAATTTCAGCATATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>504 350 146</canonical_bands>
                <polymorphic_bands>854 146</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>215 118 116 114 99 89 72 38 34 34 24 17 16 7 7</canonical_bands>
                <polymorphic_bands>215 118 116 114 99 89 72 41 38 34 24 17 16 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGTATGAGAATAGGACAATG</pcr_primer_p1>
		<pcr_primer_p2>CGATATGTGTCTTCCTTATGTCT</pcr_primer_p2>
		<pcr_amplicon_size>405</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGTATGAGAATAGGACAATGTTACGAGCATAATTTATGGTATTAGCGCTAATGTTGAACATTTTTGATTTTTCTGTTCAAAATGAACAAATTTCGCAACATTTTTTGCAAAAAATCATTGGCGGAATTTGAGAGTCTGAAGCCGGAAGTGAAACTGATTTTCCGGAAGTCGGAAGTCGGAAGACGGAAGAAAAATTTCGAACTAGGAAGTCGGAAGTCGGAATTCCTGACAACTCTGAGCTGCACCCTCCCTCCTTCATAAAGCTTTTCAAAATTTTCTCTAAATTGGCTCATTCATAGAATCAAGAATGAGCTTTTGCGTAACAATAGTCGCTACTTCGAGAAAAATTGATCGGAAATAATGCGATTTACGCGAGTAAGACATAAGGAAGACACATATCG</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGTATGAGAATAGGACAATGTTACGAGCATAATTTATGGTATTAGCGCTAATGTTGAACATTTTTGATTTTTCTGTTCAAAATGAACAAATTTCGCAACATTTTTTGCAAAAAATCATTGGCGGAATTTGAGAGTCTGAAGCCGGAAGTGAAACTGATTTTCCGGAAGTCGRAAGTCGGAAGACGGAAGAAAAATTTCGAACTAGGAAGTCGGAAGTCGGAATTCCTGACAACTCTGAGCTGCACCCTCCCTCCTTCATAAAGCTTTTCAAAATTTTCTCTAAATTGGCTCATTCATAGAATCAAGAATGAGCTTTTGCGTAACAATAGTCGCTACTTCGAGAAAAATTGATCGGAAATAATGCGATTTACGCGAGTAAGACATAAGGAAGACACATATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26835</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>671942</contig_pos>
        <strand></strand>
        <context>atttcgaact[A/C]ggaagtcgga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGATTTTCCGGAAGTCGGAAGTCGGAAGACGGAAGAAAAATTTCGAACT</left_flank>
        <right_flank>GGAAGTCGGAAGTCGGAATTCCTGACAACTCTGAGCTGCACCCTCCCTCC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCGGAGAACGCACTTAGGTTCACAACAGCGTGAGCATTAGACCCACTAGCTCGACACACCGAAAGCCTTGAATAGTTAAAAGACTTTTCTCAGATAACCGGAAACCTGATCCTGGACTTTGATCTGGAACCCGTTGGACCAGCGCCAGAAATCAAGACAACTGCTCCATTTGGATTGATGAAGAGACCTCCGAGCTATGATATAAGATTTGTTCCGATTGAAAAGTGAATTTCTCCCTGACGGAAGTTTTCTAGTTTTGTTCATGTATAAAACACTTTCTTTTTTATTTCAAAAGTATGAGAATAGGACAATGTTACGAGCATAATTTATGGTATTAGCGCTAATGTTGAACATTTTTGATTTTTCTGTTCAAAATGAACAAATTTCGCAACATTTTTTGCAAAAAATCATTGGCGGAATTTGAGAGTCTGAAGCCGGAAGTGAAACTGATTTTCCGGAAGTCGGAAGTCGGAAGACGGAAGAAAAATTTCGAACTAGGAAGTCGGAAGTCGGAATTCCTGACAACTCTGAGCTGCACCCTCCCTCCTTCATAAAGCTTTTCAAAATTTTCTCTAAATTGGCTCATTCATAGAATCAAGAATGAGCTTTTGCGTAACAATAGTCGCTACTTCGAGAAAAATTGATCGGAAATAATGCGATTTACGCGAGTAAGACATAAGGAAGACACATATCGTACAAGAAAGTAAGAAACATTTATTGGATAAAAACGTTCTAAAAAATGTCCTGAACCATTTCTGGTTCCGAAAACTGAACATTGAAAATATCAAAGGTTTTAGCGATTTCCAATTTTTCTCTTTTTTCTCTCAATACACCAAAAAGCGAATTATTGACTTTCATCATTTTCACAACTCGATCCGAGTATCTTGGATGACCAATTTGTGTATAATAATCATGTAAATCATCAGCCACAGTTTTCAGCAAATTTTCAGAAATTTCAGCATATTCTCCACCCAATCGTTTTGCAGCAAAGGAAAAC</canonical>
            <polymorphic>TTTTCGGAGAACGCACTTAGGTTCACAACAGCGTGAGCATTAGACCCACTAGCTCGACACACCGAAAGCCTTGAATAGTTAAAAGACTTTTCTCAGATAACCGGAAACCTGATCCTGGACTTTGATCTGGAACCCGTTGGACCAGCGCCAGAAATCAAGACAACTGCTCCATTTGGATTGATGAAGAGACCTCCGAGCTATGATATAAGATTTGTTCCGATTGAAAAGTGAATTTCTCCCTGACGGAAGTTTTCTAGTTTTGTTCATGTATAAAACACTTTCTTTTTTATTTCAAAAGTATGAGAATAGGACAATGTTACGAGCATAATTTATGGTATTAGCGCTAATGTTGAACATTTTTGATTTTTCTGTTCAAAATGAACAAATTTCGCAACATTTTTTGCAAAAAATCATTGGCGGAATTTGAGAGTCTGAAGCCGGAAGTGAAACTGATTTTCCGGAAGTCGGAAGTCGGAAGACGGAAGAAAAATTTCGAACTMGGAAGTCGGAAGTCGGAATTCCTGACAACTCTGAGCTGCACCCTCCCTCCTTCATAAAGCTTTTCAAAATTTTCTCTAAATTGGCTCATTCATAGAATCAAGAATGAGCTTTTGCGTAACAATAGTCGCTACTTCGAGAAAAATTGATCGGAAATAATGCGATTTACGCGAGTAAGACATAAGGAAGACACATATCGTACAAGAAAGTAAGAAACATTTATTGGATAAAAACGTTCTAAAAAATGTCCTGAACCATTTCTGGTTCCGAAAACTGAACATTGAAAATATCAAAGGTTTTAGCGATTTCCAATTTTTCTCTTTTTTCTCTCAATACACCAAAAAGCGAATTATTGACTTTCATCATTTTCACAACTCGATCCGAGTATCTTGGATGACCAATTTGTGTATAATAATCATGTAAATCATCAGCCACAGTTTTCAGCAAATTTTCAGAAATTTCAGCATATTCTCCACCCAATCGTTTTGCAGCAAAGGAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 244 205 49</canonical_bands>
                <polymorphic_bands>746 205 49</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGTATGAGAATAGGACAATG</pcr_primer_p1>
		<pcr_primer_p2>CGATATGTGTCTTCCTTATGTCT</pcr_primer_p2>
		<pcr_amplicon_size>405</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGTATGAGAATAGGACAATGTTACGAGCATAATTTATGGTATTAGCGCTAATGTTGAACATTTTTGATTTTTCTGTTCAAAATGAACAAATTTCGCAACATTTTTTGCAAAAAATCATTGGCGGAATTTGAGAGTCTGAAGCCGGAAGTGAAACTGATTTTCCGGAAGTCGGAAGTCGGAAGACGGAAGAAAAATTTCGAACTAGGAAGTCGGAAGTCGGAATTCCTGACAACTCTGAGCTGCACCCTCCCTCCTTCATAAAGCTTTTCAAAATTTTCTCTAAATTGGCTCATTCATAGAATCAAGAATGAGCTTTTGCGTAACAATAGTCGCTACTTCGAGAAAAATTGATCGGAAATAATGCGATTTACGCGAGTAAGACATAAGGAAGACACATATCG</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGTATGAGAATAGGACAATGTTACGAGCATAATTTATGGTATTAGCGCTAATGTTGAACATTTTTGATTTTTCTGTTCAAAATGAACAAATTTCGCAACATTTTTTGCAAAAAATCATTGGCGGAATTTGAGAGTCTGAAGCCGGAAGTGAAACTGATTTTCCGGAAGTCGGAAGTCGGAAGACGGAAGAAAAATTTCGAACTMGGAAGTCGGAAGTCGGAATTCCTGACAACTCTGAGCTGCACCCTCCCTCCTTCATAAAGCTTTTCAAAATTTTCTCTAAATTGGCTCATTCATAGAATCAAGAATGAGCTTTTGCGTAACAATAGTCGCTACTTCGAGAAAAATTGATCGGAAATAATGCGATTTACGCGAGTAAGACATAAGGAAGACACATATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26836</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>673052</contig_pos>
        <strand></strand>
        <context>ctaaaaaact[T/A]ggagttttca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ACAAAAGCAAACAAAAGGTCTTTCAGAAATTGGCAAATGGCTAAAAAACT</left_flank>
        <right_flank>GGAGTTTTCAATAAACTCTGTAAATGCAAATCTCTGTAGCGCCCTCTCCC</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATCGATAAATCATCAATTTGATATAACATTTAGATTACTATGCAATTTGCTCTACGCTATATTCTGTAATCCATTCCACATTTAGTTTGACAGTTTTCAAATCCAAACTGATGTCGTGTGTCATGTAAATACAAGTTGGATCCGTGAGCTTTTGACTTCGGAGATAGGCAGCCGACCGGACCAGACTTTTCAGACGATTCCATATGTGCCAGATGGTTTTTAAAAATTTTAGCTGAAAAATAAACATTACCGGTAAATCTGATATGCAACAACGTATTGTTTAGTCGATTTATGGGCATTTTGATTATTTTCAGGCGTCAGGATCTTGGCTGTTAGATTTCCAATCACTTTGAAAATTTCGCATTCATAGAATTTTTGGAAAGTTTATTGTTGTTCAAATATTTGCCAATATCTGAAAAAAACCCTATTTTTCTCATGTTTTCATTACAAAAGCAAACAAAAGGTCTTTCAGAAATTGGCAAATGGCTAAAAAACTTGGAGTTTTCAATAAACTCTGTAAATGCAAATCTCTGTAGCGCCCTCTCCCGATGGCACGACCTTATGTATTAGCCTAGCGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCTCCTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAATCATTATCTGACCAGTTCTTCCATCCTGCAGTCTTGTAGGATGGTTGTTCCGTTCACTCGCTCCTTCCGGTAACTGACACTAACATTTACTAATACGTACTTGCCCAGCAAGGTCCTATATGGCCCAGCTTGTACTATGATGA</canonical>
            <polymorphic>AAAATCGATAAATCATCAATTTGATATAACATTTAGATTACTATGCAATTTGCTCTACGCTATATTCTGTAATCCATTCCACATTTAGTTTGACAGTTTTCAAATCCAAACTGATGTCGTGTGTCATGTAAATACAAGTTGGATCCGTGAGCTTTTGACTTCGGAGATAGGCAGCCGACCGGACCAGACTTTTCAGACGATTCCATATGTGCCAGATGGTTTTTAAAAATTTTAGCTGAAAAATAAACATTACCGGTAAATCTGATATGCAACAACGTATTGTTTAGTCGATTTATGGGCATTTTGATTATTTTCAGGCGTCAGGATCTTGGCTGTTAGATTTCCAATCACTTTGAAAATTTCGCATTCATAGAATTTTTGGAAAGTTTATTGTTGTTCAAATATTTGCCAATATCTGAAAAAAACCCTATTTTTCTCATGTTTTCATTACAAAAGCAAACAAAAGGTCTTTCAGAAATTGGCAAATGGCTAAAAAACTWGGAGTTTTCAATAAACTCTGTAAATGCAAATCTCTGTAGCGCCCTCTCCCGATGGCACGACCTTATGTATTAGCCTAGCGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCTCCTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAATCATTATCTGACCAGTTCTTCCATCCTGCAGTCTTGTAGGATGGTTGTTCCGTTCACTCGCTCCTTCCGGTAACTGACACTAACATTTACTAATACGTACTTGCCCAGCAAGGTCCTATATGGCCCAGCTTGTACTATGATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATGTGCCAGATGGTTTTTA</pcr_primer_p1>
		<pcr_primer_p2>GCTAGGCTAATACATAAGGTCGT</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>ATATGTGCCAGATGGTTTTTAAAAATTTTAGCTGAAAAATAAACATTACCGGTAAATCTGATATGCAACAACGTATTGTTTAGTCGATTTATGGGCATTTTGATTATTTTCAGGCGTCAGGATCTTGGCTGTTAGATTTCCAATCACTTTGAAAATTTCGCATTCATAGAATTTTTGGAAAGTTTATTGTTGTTCAAATATTTGCCAATATCTGAAAAAAACCCTATTTTTCTCATGTTTTCATTACAAAAGCAAACAAAAGGTCTTTCAGAAATTGGCAAATGGCTAAAAAACTTGGAGTTTTCAATAAACTCTGTAAATGCAAATCTCTGTAGCGCCCTCTCCCGATGGCACGACCTTATGTATTAGCCTAGC</canonical_amplicon>
		<polymorphic_amplicon>ATATGTGCCAGATGGTTTTTAAAAATTTTAGCTGAAAAATAAACATTACCGGTAAATCTGATATGCAACAACGTATTGTTTAGTCGATTTATGGGCATTTTGATTATTTTCAGGCGTCAGGATCTTGGCTGTTAGATTTCCAATCACTTTGAAAATTTCGCATTCATAGAATTTTTGGAAAGTTTATTGTTGTTCAAATATTTGCCAATATCTGAAAAAAACCCTATTTTTCTCATGTTTTCATTACAAAAGCAAACAAAAGGTCTTTCAGAAATTGGCAAATGGCTAAAAAACTWGGAGTTTTCAATAAACTCTGTAAATGCAAATCTCTGTAGCGCCCTCTCCCGATGGCACGACCTTATGTATTAGCCTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26837</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>673181</contig_pos>
        <strand>+</strand>
        <context>CCAATACACC[A/G]AGGAAACGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACC</left_flank>
        <right_flank>AGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATACAAGTTGGATCCGTGAGCTTTTGACTTCGGAGATAGGCAGCCGACCGGACCAGACTTTTCAGACGATTCCATATGTGCCAGATGGTTTTTAAAAATTTTAGCTGAAAAATAAACATTACCGGTAAATCTGATATGCAACAACGTATTGTTTAGTCGATTTATGGGCATTTTGATTATTTTCAGGCGTCAGGATCTTGGCTGTTAGATTTCCAATCACTTTGAAAATTTCGCATTCATAGAATTTTTGGAAAGTTTATTGTTGTTCAAATATTTGCCAATATCTGAAAAAAACCCTATTTTTCTCATGTTTTCATTACAAAAGCAAACAAAAGGTCTTTCAGAAATTGGCAAATGGCTAAAAAACTTGGAGTTTTCAATAAACTCTGTAAATGCAAATCTCTGTAGCGCCCTCTCCCGATGGCACGACCTTATGTATTAGCCTAGCGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCTCCTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAATCATTATCTGACCAGTTCTTCCATCCTGCAGTCTTGTAGGATGGTTGTTCCGTTCACTCGCTCCTTCCGGTAACTGACACTAACATTTACTAATACGTACTTGCCCAGCAAGGTCCTATATGGCCCAGCTTGTACTATGATGAACCCAATGTGATACAATCCTTGTCTACTAAACACTCACAACGTCTGCTACATAACAGTCACGGTTTGCTAGGAGTGTGGACTCATCACCCCTCAATACTAAACCGCGACAAGGTCTGTTTTACATCCTC</canonical>
            <polymorphic>AAATACAAGTTGGATCCGTGAGCTTTTGACTTCGGAGATAGGCAGCCGACCGGACCAGACTTTTCAGACGATTCCATATGTGCCAGATGGTTTTTAAAAATTTTAGCTGAAAAATAAACATTACCGGTAAATCTGATATGCAACAACGTATTGTTTAGTCGATTTATGGGCATTTTGATTATTTTCAGGCGTCAGGATCTTGGCTGTTAGATTTCCAATCACTTTGAAAATTTCGCATTCATAGAATTTTTGGAAAGTTTATTGTTGTTCAAATATTTGCCAATATCTGAAAAAAACCCTATTTTTCTCATGTTTTCATTACAAAAGCAAACAAAAGGTCTTTCAGAAATTGGCAAATGGCTAAAAAACTTGGAGTTTTCAATAAACTCTGTAAATGCAAATCTCTGTAGCGCCCTCTCCCGATGGCACGACCTTATGTATTAGCCTAGCGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACCRAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCTCCTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAATCATTATCTGACCAGTTCTTCCATCCTGCAGTCTTGTAGGATGGTTGTTCCGTTCACTCGCTCCTTCCGGTAACTGACACTAACATTTACTAATACGTACTTGCCCAGCAAGGTCCTATATGGCCCAGCTTGTACTATGATGAACCCAATGTGATACAATCCTTGTCTACTAAACACTCACAACGTCTGCTACATAACAGTCACGGTTTGCTAGGAGTGTGGACTCATCACCCCTCAATACTAAACCGCGACAAGGTCTGTTTTACATCCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGACCTTATGTATTAGCCTAGC</pcr_primer_p1>
		<pcr_primer_p2>AGAGATCATAGAGAATGGAGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGACCTTATGTATTAGCCTAGCGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCT</canonical_amplicon>
		<polymorphic_amplicon>ACGACCTTATGTATTAGCCTAGCGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACCRAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26838</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>673216</contig_pos>
        <strand>+</strand>
        <context>GCTGCCCACA[A/G]RAGTCTGCGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACA</left_flank>
        <right_flank>GAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATAGGCAGCCGACCGGACCAGACTTTTCAGACGATTCCATATGTGCCAGATGGTTTTTAAAAATTTTAGCTGAAAAATAAACATTACCGGTAAATCTGATATGCAACAACGTATTGTTTAGTCGATTTATGGGCATTTTGATTATTTTCAGGCGTCAGGATCTTGGCTGTTAGATTTCCAATCACTTTGAAAATTTCGCATTCATAGAATTTTTGGAAAGTTTATTGTTGTTCAAATATTTGCCAATATCTGAAAAAAACCCTATTTTTCTCATGTTTTCATTACAAAAGCAAACAAAAGGTCTTTCAGAAATTGGCAAATGGCTAAAAAACTTGGAGTTTTCAATAAACTCTGTAAATGCAAATCTCTGTAGCGCCCTCTCCCGATGGCACGACCTTATGTATTAGCCTAGCGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCTCCTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAATCATTATCTGACCAGTTCTTCCATCCTGCAGTCTTGTAGGATGGTTGTTCCGTTCACTCGCTCCTTCCGGTAACTGACACTAACATTTACTAATACGTACTTGCCCAGCAAGGTCCTATATGGCCCAGCTTGTACTATGATGAACCCAATGTGATACAATCCTTGTCTACTAAACACTCACAACGTCTGCTACATAACAGTCACGGTTTGCTAGGAGTGTGGACTCATCACCCCTCAATACTAAACCGCGACAAGGTCTGTTTTACATCCTCCAAAAATTAGAAAGTGATTGGAAACTTGACAGCCG</canonical>
            <polymorphic>AGATAGGCAGCCGACCGGACCAGACTTTTCAGACGATTCCATATGTGCCAGATGGTTTTTAAAAATTTTAGCTGAAAAATAAACATTACCGGTAAATCTGATATGCAACAACGTATTGTTTAGTCGATTTATGGGCATTTTGATTATTTTCAGGCGTCAGGATCTTGGCTGTTAGATTTCCAATCACTTTGAAAATTTCGCATTCATAGAATTTTTGGAAAGTTTATTGTTGTTCAAATATTTGCCAATATCTGAAAAAAACCCTATTTTTCTCATGTTTTCATTACAAAAGCAAACAAAAGGTCTTTCAGAAATTGGCAAATGGCTAAAAAACTTGGAGTTTTCAATAAACTCTGTAAATGCAAATCTCTGTAGCGCCCTCTCCCGATGGCACGACCTTATGTATTAGCCTAGCGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACARGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCTCCTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAATCATTATCTGACCAGTTCTTCCATCCTGCAGTCTTGTAGGATGGTTGTTCCGTTCACTCGCTCCTTCCGGTAACTGACACTAACATTTACTAATACGTACTTGCCCAGCAAGGTCCTATATGGCCCAGCTTGTACTATGATGAACCCAATGTGATACAATCCTTGTCTACTAAACACTCACAACGTCTGCTACATAACAGTCACGGTTTGCTAGGAGTGTGGACTCATCACCCCTCAATACTAAACCGCGACAAGGTCTGTTTTACATCCTCCAAAAATTAGAAAGTGATTGGAAACTTGACAGCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGACCTTATGTATTAGCCTAGC</pcr_primer_p1>
		<pcr_primer_p2>AGAGATCATAGAGAATGGAGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGACCTTATGTATTAGCCTAGCGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCT</canonical_amplicon>
		<polymorphic_amplicon>ACGACCTTATGTATTAGCCTAGCGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACARGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26839</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>673217</contig_pos>
        <strand>+</strand>
        <context>CTGCCCACAR[A/G]AGTCTGCGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAG</left_flank>
        <right_flank>AGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATAGGCAGCCGACCGGACCAGACTTTTCAGACGATTCCATATGTGCCAGATGGTTTTTAAAAATTTTAGCTGAAAAATAAACATTACCGGTAAATCTGATATGCAACAACGTATTGTTTAGTCGATTTATGGGCATTTTGATTATTTTCAGGCGTCAGGATCTTGGCTGTTAGATTTCCAATCACTTTGAAAATTTCGCATTCATAGAATTTTTGGAAAGTTTATTGTTGTTCAAATATTTGCCAATATCTGAAAAAAACCCTATTTTTCTCATGTTTTCATTACAAAAGCAAACAAAAGGTCTTTCAGAAATTGGCAAATGGCTAAAAAACTTGGAGTTTTCAATAAACTCTGTAAATGCAAATCTCTGTAGCGCCCTCTCCCGATGGCACGACCTTATGTATTAGCCTAGCGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCTCCTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAATCATTATCTGACCAGTTCTTCCATCCTGCAGTCTTGTAGGATGGTTGTTCCGTTCACTCGCTCCTTCCGGTAACTGACACTAACATTTACTAATACGTACTTGCCCAGCAAGGTCCTATATGGCCCAGCTTGTACTATGATGAACCCAATGTGATACAATCCTTGTCTACTAAACACTCACAACGTCTGCTACATAACAGTCACGGTTTGCTAGGAGTGTGGACTCATCACCCCTCAATACTAAACCGCGACAAGGTCTGTTTTACATCCTCCAAAAATTAGAAAGTGATTGGAAACTTGACAGCCGA</canonical>
            <polymorphic>GATAGGCAGCCGACCGGACCAGACTTTTCAGACGATTCCATATGTGCCAGATGGTTTTTAAAAATTTTAGCTGAAAAATAAACATTACCGGTAAATCTGATATGCAACAACGTATTGTTTAGTCGATTTATGGGCATTTTGATTATTTTCAGGCGTCAGGATCTTGGCTGTTAGATTTCCAATCACTTTGAAAATTTCGCATTCATAGAATTTTTGGAAAGTTTATTGTTGTTCAAATATTTGCCAATATCTGAAAAAAACCCTATTTTTCTCATGTTTTCATTACAAAAGCAAACAAAAGGTCTTTCAGAAATTGGCAAATGGCTAAAAAACTTGGAGTTTTCAATAAACTCTGTAAATGCAAATCTCTGTAGCGCCCTCTCCCGATGGCACGACCTTATGTATTAGCCTAGCGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGRAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCTCCTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAATCATTATCTGACCAGTTCTTCCATCCTGCAGTCTTGTAGGATGGTTGTTCCGTTCACTCGCTCCTTCCGGTAACTGACACTAACATTTACTAATACGTACTTGCCCAGCAAGGTCCTATATGGCCCAGCTTGTACTATGATGAACCCAATGTGATACAATCCTTGTCTACTAAACACTCACAACGTCTGCTACATAACAGTCACGGTTTGCTAGGAGTGTGGACTCATCACCCCTCAATACTAAACCGCGACAAGGTCTGTTTTACATCCTCCAAAAATTAGAAAGTGATTGGAAACTTGACAGCCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>466 233 181 86 34</canonical_bands>
                <polymorphic_bands>647 233 86 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGACCTTATGTATTAGCCTAGC</pcr_primer_p1>
		<pcr_primer_p2>AGAGATCATAGAGAATGGAGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGACCTTATGTATTAGCCTAGCGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCT</canonical_amplicon>
		<polymorphic_amplicon>ACGACCTTATGTATTAGCCTAGCGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGRAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26840</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>673299</contig_pos>
        <strand>+</strand>
        <context>GACCTGCGCC[A/G]AATGGGACAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCC</left_flank>
        <right_flank>AATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTACCGGTAAATCTGATATGCAACAACGTATTGTTTAGTCGATTTATGGGCATTTTGATTATTTTCAGGCGTCAGGATCTTGGCTGTTAGATTTCCAATCACTTTGAAAATTTCGCATTCATAGAATTTTTGGAAAGTTTATTGTTGTTCAAATATTTGCCAATATCTGAAAAAAACCCTATTTTTCTCATGTTTTCATTACAAAAGCAAACAAAAGGTCTTTCAGAAATTGGCAAATGGCTAAAAAACTTGGAGTTTTCAATAAACTCTGTAAATGCAAATCTCTGTAGCGCCCTCTCCCGATGGCACGACCTTATGTATTAGCCTAGCGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCTCCTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAATCATTATCTGACCAGTTCTTCCATCCTGCAGTCTTGTAGGATGGTTGTTCCGTTCACTCGCTCCTTCCGGTAACTGACACTAACATTTACTAATACGTACTTGCCCAGCAAGGTCCTATATGGCCCAGCTTGTACTATGATGAACCCAATGTGATACAATCCTTGTCTACTAAACACTCACAACGTCTGCTACATAACAGTCACGGTTTGCTAGGAGTGTGGACTCATCACCCCTCAATACTAAACCGCGACAAGGTCTGTTTTACATCCTCCAAAAATTAGAAAGTGATTGGAAACTTGACAGCCGATTACTTTTTTTTTCAAAATGAAAATTTTCCAAACTCACTTTAACACTCAATCCAAGCTCTTGAAATTCGCCAAAATAAGTAA</canonical>
            <polymorphic>CATTACCGGTAAATCTGATATGCAACAACGTATTGTTTAGTCGATTTATGGGCATTTTGATTATTTTCAGGCGTCAGGATCTTGGCTGTTAGATTTCCAATCACTTTGAAAATTTCGCATTCATAGAATTTTTGGAAAGTTTATTGTTGTTCAAATATTTGCCAATATCTGAAAAAAACCCTATTTTTCTCATGTTTTCATTACAAAAGCAAACAAAAGGTCTTTCAGAAATTGGCAAATGGCTAAAAAACTTGGAGTTTTCAATAAACTCTGTAAATGCAAATCTCTGTAGCGCCCTCTCCCGATGGCACGACCTTATGTATTAGCCTAGCGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCRAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCTCCTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAATCATTATCTGACCAGTTCTTCCATCCTGCAGTCTTGTAGGATGGTTGTTCCGTTCACTCGCTCCTTCCGGTAACTGACACTAACATTTACTAATACGTACTTGCCCAGCAAGGTCCTATATGGCCCAGCTTGTACTATGATGAACCCAATGTGATACAATCCTTGTCTACTAAACACTCACAACGTCTGCTACATAACAGTCACGGTTTGCTAGGAGTGTGGACTCATCACCCCTCAATACTAAACCGCGACAAGGTCTGTTTTACATCCTCCAAAAATTAGAAAGTGATTGGAAACTTGACAGCCGATTACTTTTTTTTTCAAAATGAAAATTTTCCAAACTCACTTTAACACTCAATCCAAGCTCTTGAAATTCGCCAAAATAAGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGACCTTATGTATTAGCCTAGC</pcr_primer_p1>
		<pcr_primer_p2>AGAGATCATAGAGAATGGAGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGACCTTATGTATTAGCCTAGCGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCT</canonical_amplicon>
		<polymorphic_amplicon>ACGACCTTATGTATTAGCCTAGCGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCRAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26841</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>673326</contig_pos>
        <strand>+</strand>
        <context>CCAACCAGGA[C/G]CAGACGCACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGA</left_flank>
        <right_flank>CAGACGCACTCTCTCCATTCTCTATGATCTCTCCTTTCCTTGTCTCTGCG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGTATTGTTTAGTCGATTTATGGGCATTTTGATTATTTTCAGGCGTCAGGATCTTGGCTGTTAGATTTCCAATCACTTTGAAAATTTCGCATTCATAGAATTTTTGGAAAGTTTATTGTTGTTCAAATATTTGCCAATATCTGAAAAAAACCCTATTTTTCTCATGTTTTCATTACAAAAGCAAACAAAAGGTCTTTCAGAAATTGGCAAATGGCTAAAAAACTTGGAGTTTTCAATAAACTCTGTAAATGCAAATCTCTGTAGCGCCCTCTCCCGATGGCACGACCTTATGTATTAGCCTAGCGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCTCCTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAATCATTATCTGACCAGTTCTTCCATCCTGCAGTCTTGTAGGATGGTTGTTCCGTTCACTCGCTCCTTCCGGTAACTGACACTAACATTTACTAATACGTACTTGCCCAGCAAGGTCCTATATGGCCCAGCTTGTACTATGATGAACCCAATGTGATACAATCCTTGTCTACTAAACACTCACAACGTCTGCTACATAACAGTCACGGTTTGCTAGGAGTGTGGACTCATCACCCCTCAATACTAAACCGCGACAAGGTCTGTTTTACATCCTCCAAAAATTAGAAAGTGATTGGAAACTTGACAGCCGATTACTTTTTTTTTCAAAATGAAAATTTTCCAAACTCACTTTAACACTCAATCCAAGCTCTTGAAATTCGCCAAAATAAGTAAGCCATCTTGCCACTGAAAGTAGGTCAT</canonical>
            <polymorphic>ACGTATTGTTTAGTCGATTTATGGGCATTTTGATTATTTTCAGGCGTCAGGATCTTGGCTGTTAGATTTCCAATCACTTTGAAAATTTCGCATTCATAGAATTTTTGGAAAGTTTATTGTTGTTCAAATATTTGCCAATATCTGAAAAAAACCCTATTTTTCTCATGTTTTCATTACAAAAGCAAACAAAAGGTCTTTCAGAAATTGGCAAATGGCTAAAAAACTTGGAGTTTTCAATAAACTCTGTAAATGCAAATCTCTGTAGCGCCCTCTCCCGATGGCACGACCTTATGTATTAGCCTAGCGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGASCAGACGCACTCTCTCCATTCTCTATGATCTCTCCTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAATCATTATCTGACCAGTTCTTCCATCCTGCAGTCTTGTAGGATGGTTGTTCCGTTCACTCGCTCCTTCCGGTAACTGACACTAACATTTACTAATACGTACTTGCCCAGCAAGGTCCTATATGGCCCAGCTTGTACTATGATGAACCCAATGTGATACAATCCTTGTCTACTAAACACTCACAACGTCTGCTACATAACAGTCACGGTTTGCTAGGAGTGTGGACTCATCACCCCTCAATACTAAACCGCGACAAGGTCTGTTTTACATCCTCCAAAAATTAGAAAGTGATTGGAAACTTGACAGCCGATTACTTTTTTTTTCAAAATGAAAATTTTCCAAACTCACTTTAACACTCAATCCAAGCTCTTGAAATTCGCCAAAATAAGTAAGCCATCTTGCCACTGAAAGTAGGTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>462 305 198 35</canonical_bands>
                <polymorphic_bands>462 305 233</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>462 295 198 35 10</canonical_bands>
                <polymorphic_bands>462 295 233 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCCTACAGTCACCCAATAC</pcr_primer_p1>
		<pcr_primer_p2>AGTGATAAGTGATGCGAGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>AAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCTCCTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACT</canonical_amplicon>
		<polymorphic_amplicon>AAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGASCAGACGCACTCTCTCCATTCTCTATGATCTCTCCTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26842</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>673359</contig_pos>
        <strand>+</strand>
        <context>TATGATCTCT[C/T]YTYTCCTTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCT</left_flank>
        <right_flank>CTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATTTTCAGGCGTCAGGATCTTGGCTGTTAGATTTCCAATCACTTTGAAAATTTCGCATTCATAGAATTTTTGGAAAGTTTATTGTTGTTCAAATATTTGCCAATATCTGAAAAAAACCCTATTTTTCTCATGTTTTCATTACAAAAGCAAACAAAAGGTCTTTCAGAAATTGGCAAATGGCTAAAAAACTTGGAGTTTTCAATAAACTCTGTAAATGCAAATCTCTGTAGCGCCCTCTCCCGATGGCACGACCTTATGTATTAGCCTAGCGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCTCCTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAATCATTATCTGACCAGTTCTTCCATCCTGCAGTCTTGTAGGATGGTTGTTCCGTTCACTCGCTCCTTCCGGTAACTGACACTAACATTTACTAATACGTACTTGCCCAGCAAGGTCCTATATGGCCCAGCTTGTACTATGATGAACCCAATGTGATACAATCCTTGTCTACTAAACACTCACAACGTCTGCTACATAACAGTCACGGTTTGCTAGGAGTGTGGACTCATCACCCCTCAATACTAAACCGCGACAAGGTCTGTTTTACATCCTCCAAAAATTAGAAAGTGATTGGAAACTTGACAGCCGATTACTTTTTTTTTCAAAATGAAAATTTTCCAAACTCACTTTAACACTCAATCCAAGCTCTTGAAATTCGCCAAAATAAGTAAGCCATCTTGCCACTGAAAGTAGGTCATTCTCCCAAATAATGAAAGATTCTCGGATTCCAA</canonical>
            <polymorphic>TTATTTTCAGGCGTCAGGATCTTGGCTGTTAGATTTCCAATCACTTTGAAAATTTCGCATTCATAGAATTTTTGGAAAGTTTATTGTTGTTCAAATATTTGCCAATATCTGAAAAAAACCCTATTTTTCTCATGTTTTCATTACAAAAGCAAACAAAAGGTCTTTCAGAAATTGGCAAATGGCTAAAAAACTTGGAGTTTTCAATAAACTCTGTAAATGCAAATCTCTGTAGCGCCCTCTCCCGATGGCACGACCTTATGTATTAGCCTAGCGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCTYCTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAATCATTATCTGACCAGTTCTTCCATCCTGCAGTCTTGTAGGATGGTTGTTCCGTTCACTCGCTCCTTCCGGTAACTGACACTAACATTTACTAATACGTACTTGCCCAGCAAGGTCCTATATGGCCCAGCTTGTACTATGATGAACCCAATGTGATACAATCCTTGTCTACTAAACACTCACAACGTCTGCTACATAACAGTCACGGTTTGCTAGGAGTGTGGACTCATCACCCCTCAATACTAAACCGCGACAAGGTCTGTTTTACATCCTCCAAAAATTAGAAAGTGATTGGAAACTTGACAGCCGATTACTTTTTTTTTCAAAATGAAAATTTTCCAAACTCACTTTAACACTCAATCCAAGCTCTTGAAATTCGCCAAAATAAGTAAGCCATCTTGCCACTGAAAGTAGGTCATTCTCCCAAATAATGAAAGATTCTCGGATTCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCCTACAGTCACCCAATAC</pcr_primer_p1>
		<pcr_primer_p2>ACTGGTCAGATAATGATTACAATG</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>AAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCTCCTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAATCATTATCTGACCAGT</canonical_amplicon>
		<polymorphic_amplicon>AAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCTYCTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAATCATTATCTGACCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26843</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>673360</contig_pos>
        <strand>+</strand>
        <context>ATGATCTCTY[C/T]TYTCCTTGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCTC</left_flank>
        <right_flank>TTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTTCAGGCGTCAGGATCTTGGCTGTTAGATTTCCAATCACTTTGAAAATTTCGCATTCATAGAATTTTTGGAAAGTTTATTGTTGTTCAAATATTTGCCAATATCTGAAAAAAACCCTATTTTTCTCATGTTTTCATTACAAAAGCAAACAAAAGGTCTTTCAGAAATTGGCAAATGGCTAAAAAACTTGGAGTTTTCAATAAACTCTGTAAATGCAAATCTCTGTAGCGCCCTCTCCCGATGGCACGACCTTATGTATTAGCCTAGCGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCTCCTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAATCATTATCTGACCAGTTCTTCCATCCTGCAGTCTTGTAGGATGGTTGTTCCGTTCACTCGCTCCTTCCGGTAACTGACACTAACATTTACTAATACGTACTTGCCCAGCAAGGTCCTATATGGCCCAGCTTGTACTATGATGAACCCAATGTGATACAATCCTTGTCTACTAAACACTCACAACGTCTGCTACATAACAGTCACGGTTTGCTAGGAGTGTGGACTCATCACCCCTCAATACTAAACCGCGACAAGGTCTGTTTTACATCCTCCAAAAATTAGAAAGTGATTGGAAACTTGACAGCCGATTACTTTTTTTTTCAAAATGAAAATTTTCCAAACTCACTTTAACACTCAATCCAAGCTCTTGAAATTCGCCAAAATAAGTAAGCCATCTTGCCACTGAAAGTAGGTCATTCTCCCAAATAATGAAAGATTCTCGGATTCCAAC</canonical>
            <polymorphic>TATTTTCAGGCGTCAGGATCTTGGCTGTTAGATTTCCAATCACTTTGAAAATTTCGCATTCATAGAATTTTTGGAAAGTTTATTGTTGTTCAAATATTTGCCAATATCTGAAAAAAACCCTATTTTTCTCATGTTTTCATTACAAAAGCAAACAAAAGGTCTTTCAGAAATTGGCAAATGGCTAAAAAACTTGGAGTTTTCAATAAACTCTGTAAATGCAAATCTCTGTAGCGCCCTCTCCCGATGGCACGACCTTATGTATTAGCCTAGCGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCTCYTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAATCATTATCTGACCAGTTCTTCCATCCTGCAGTCTTGTAGGATGGTTGTTCCGTTCACTCGCTCCTTCCGGTAACTGACACTAACATTTACTAATACGTACTTGCCCAGCAAGGTCCTATATGGCCCAGCTTGTACTATGATGAACCCAATGTGATACAATCCTTGTCTACTAAACACTCACAACGTCTGCTACATAACAGTCACGGTTTGCTAGGAGTGTGGACTCATCACCCCTCAATACTAAACCGCGACAAGGTCTGTTTTACATCCTCCAAAAATTAGAAAGTGATTGGAAACTTGACAGCCGATTACTTTTTTTTTCAAAATGAAAATTTTCCAAACTCACTTTAACACTCAATCCAAGCTCTTGAAATTCGCCAAAATAAGTAAGCCATCTTGCCACTGAAAGTAGGTCATTCTCCCAAATAATGAAAGATTCTCGGATTCCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCCTACAGTCACCCAATAC</pcr_primer_p1>
		<pcr_primer_p2>ACTGGTCAGATAATGATTACAATG</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>AAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCTCCTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAATCATTATCTGACCAGT</canonical_amplicon>
		<polymorphic_amplicon>AAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCTCYTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAATCATTATCTGACCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26844</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>673362</contig_pos>
        <strand>+</strand>
        <context>GATCTCTYYT[C/T]TCCTTGTCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCTCCT</left_flank>
        <right_flank>TCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAATCA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCAGGCGTCAGGATCTTGGCTGTTAGATTTCCAATCACTTTGAAAATTTCGCATTCATAGAATTTTTGGAAAGTTTATTGTTGTTCAAATATTTGCCAATATCTGAAAAAAACCCTATTTTTCTCATGTTTTCATTACAAAAGCAAACAAAAGGTCTTTCAGAAATTGGCAAATGGCTAAAAAACTTGGAGTTTTCAATAAACTCTGTAAATGCAAATCTCTGTAGCGCCCTCTCCCGATGGCACGACCTTATGTATTAGCCTAGCGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCTCCTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAATCATTATCTGACCAGTTCTTCCATCCTGCAGTCTTGTAGGATGGTTGTTCCGTTCACTCGCTCCTTCCGGTAACTGACACTAACATTTACTAATACGTACTTGCCCAGCAAGGTCCTATATGGCCCAGCTTGTACTATGATGAACCCAATGTGATACAATCCTTGTCTACTAAACACTCACAACGTCTGCTACATAACAGTCACGGTTTGCTAGGAGTGTGGACTCATCACCCCTCAATACTAAACCGCGACAAGGTCTGTTTTACATCCTCCAAAAATTAGAAAGTGATTGGAAACTTGACAGCCGATTACTTTTTTTTTCAAAATGAAAATTTTCCAAACTCACTTTAACACTCAATCCAAGCTCTTGAAATTCGCCAAAATAAGTAAGCCATCTTGCCACTGAAAGTAGGTCATTCTCCCAAATAATGAAAGATTCTCGGATTCCAACAG</canonical>
            <polymorphic>TTTTCAGGCGTCAGGATCTTGGCTGTTAGATTTCCAATCACTTTGAAAATTTCGCATTCATAGAATTTTTGGAAAGTTTATTGTTGTTCAAATATTTGCCAATATCTGAAAAAAACCCTATTTTTCTCATGTTTTCATTACAAAAGCAAACAAAAGGTCTTTCAGAAATTGGCAAATGGCTAAAAAACTTGGAGTTTTCAATAAACTCTGTAAATGCAAATCTCTGTAGCGCCCTCTCCCGATGGCACGACCTTATGTATTAGCCTAGCGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCTCCTYTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAATCATTATCTGACCAGTTCTTCCATCCTGCAGTCTTGTAGGATGGTTGTTCCGTTCACTCGCTCCTTCCGGTAACTGACACTAACATTTACTAATACGTACTTGCCCAGCAAGGTCCTATATGGCCCAGCTTGTACTATGATGAACCCAATGTGATACAATCCTTGTCTACTAAACACTCACAACGTCTGCTACATAACAGTCACGGTTTGCTAGGAGTGTGGACTCATCACCCCTCAATACTAAACCGCGACAAGGTCTGTTTTACATCCTCCAAAAATTAGAAAGTGATTGGAAACTTGACAGCCGATTACTTTTTTTTTCAAAATGAAAATTTTCCAAACTCACTTTAACACTCAATCCAAGCTCTTGAAATTCGCCAAAATAAGTAAGCCATCTTGCCACTGAAAGTAGGTCATTCTCCCAAATAATGAAAGATTCTCGGATTCCAACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCCTACAGTCACCCAATAC</pcr_primer_p1>
		<pcr_primer_p2>ACTGGTCAGATAATGATTACAATG</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>AAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCTCCTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAATCATTATCTGACCAGT</canonical_amplicon>
		<polymorphic_amplicon>AAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCTCCTYTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAATCATTATCTGACCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26845</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>673401</contig_pos>
        <strand>+</strand>
        <context>TATCACTGAT[C/T]CATTGTAATC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGATCTCTCCTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGAT</left_flank>
        <right_flank>CATTGTAATCATTATCTGACCAGTTCTTCCATCCTGCAGTCTTGTAGGAT</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTTGAAAATTTCGCATTCATAGAATTTTTGGAAAGTTTATTGTTGTTCAAATATTTGCCAATATCTGAAAAAAACCCTATTTTTCTCATGTTTTCATTACAAAAGCAAACAAAAGGTCTTTCAGAAATTGGCAAATGGCTAAAAAACTTGGAGTTTTCAATAAACTCTGTAAATGCAAATCTCTGTAGCGCCCTCTCCCGATGGCACGACCTTATGTATTAGCCTAGCGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCTCCTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAATCATTATCTGACCAGTTCTTCCATCCTGCAGTCTTGTAGGATGGTTGTTCCGTTCACTCGCTCCTTCCGGTAACTGACACTAACATTTACTAATACGTACTTGCCCAGCAAGGTCCTATATGGCCCAGCTTGTACTATGATGAACCCAATGTGATACAATCCTTGTCTACTAAACACTCACAACGTCTGCTACATAACAGTCACGGTTTGCTAGGAGTGTGGACTCATCACCCCTCAATACTAAACCGCGACAAGGTCTGTTTTACATCCTCCAAAAATTAGAAAGTGATTGGAAACTTGACAGCCGATTACTTTTTTTTTCAAAATGAAAATTTTCCAAACTCACTTTAACACTCAATCCAAGCTCTTGAAATTCGCCAAAATAAGTAAGCCATCTTGCCACTGAAAGTAGGTCATTCTCCCAAATAATGAAAGATTCTCGGATTCCAACAGTTGTTATTTTATTATAATCATAACTTTTGAGTTCTCGGA</canonical>
            <polymorphic>ACTTTGAAAATTTCGCATTCATAGAATTTTTGGAAAGTTTATTGTTGTTCAAATATTTGCCAATATCTGAAAAAAACCCTATTTTTCTCATGTTTTCATTACAAAAGCAAACAAAAGGTCTTTCAGAAATTGGCAAATGGCTAAAAAACTTGGAGTTTTCAATAAACTCTGTAAATGCAAATCTCTGTAGCGCCCTCTCCCGATGGCACGACCTTATGTATTAGCCTAGCGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCTCCTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATYCATTGTAATCATTATCTGACCAGTTCTTCCATCCTGCAGTCTTGTAGGATGGTTGTTCCGTTCACTCGCTCCTTCCGGTAACTGACACTAACATTTACTAATACGTACTTGCCCAGCAAGGTCCTATATGGCCCAGCTTGTACTATGATGAACCCAATGTGATACAATCCTTGTCTACTAAACACTCACAACGTCTGCTACATAACAGTCACGGTTTGCTAGGAGTGTGGACTCATCACCCCTCAATACTAAACCGCGACAAGGTCTGTTTTACATCCTCCAAAAATTAGAAAGTGATTGGAAACTTGACAGCCGATTACTTTTTTTTTCAAAATGAAAATTTTCCAAACTCACTTTAACACTCAATCCAAGCTCTTGAAATTCGCCAAAATAAGTAAGCCATCTTGCCACTGAAAGTAGGTCATTCTCCCAAATAATGAAAGATTCTCGGATTCCAACAGTTGTTATTTTATTATAATCATAACTTTTGAGTTCTCGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>316 233 213 181 49 8</canonical_bands>
                <polymorphic_bands>414 316 213 49 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>497 446 49 8</canonical_bands>
                <polymorphic_bands>943 49 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCTCTCCATTCTCTATGATCTC</pcr_primer_p1>
		<pcr_primer_p2>TAGACAAGGATTGTATCACATTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACTCTCTCCATTCTCTATGATCTCTCCTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAATCATTATCTGACCAGTTCTTCCATCCTGCAGTCTTGTAGGATGGTTGTTCCGTTCACTCGCTCCTTCCGGTAACTGACACTAACATTTACTAATACGTACTTGCCCAGCAAGGTCCTATATGGCCCAGCTTGTACTATGATGAACCCAATGTGATACAATCCTTGTCTA</canonical_amplicon>
		<polymorphic_amplicon>ACTCTCTCCATTCTCTATGATCTCTCCTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATYCATTGTAATCATTATCTGACCAGTTCTTCCATCCTGCAGTCTTGTAGGATGGTTGTTCCGTTCACTCGCTCCTTCCGGTAACTGACACTAACATTTACTAATACGTACTTGCCCAGCAAGGTCCTATATGGCCCAGCTTGTACTATGATGAACCCAATGTGATACAATCCTTGTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26846</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>673461</contig_pos>
        <strand>+</strand>
        <context>TGGTTGTTCC[A/G]TTCACTCGCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTATCTGACCAGTTCTTCCATCCTGCAGTCTTGTAGGATGGTTGTTCC</left_flank>
        <right_flank>TTCACTCGCTCCTTCCGGTAACTGACACTAACATTTACTAATACGTACTT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATATCTGAAAAAAACCCTATTTTTCTCATGTTTTCATTACAAAAGCAAACAAAAGGTCTTTCAGAAATTGGCAAATGGCTAAAAAACTTGGAGTTTTCAATAAACTCTGTAAATGCAAATCTCTGTAGCGCCCTCTCCCGATGGCACGACCTTATGTATTAGCCTAGCGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCTCCTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAATCATTATCTGACCAGTTCTTCCATCCTGCAGTCTTGTAGGATGGTTGTTCCGTTCACTCGCTCCTTCCGGTAACTGACACTAACATTTACTAATACGTACTTGCCCAGCAAGGTCCTATATGGCCCAGCTTGTACTATGATGAACCCAATGTGATACAATCCTTGTCTACTAAACACTCACAACGTCTGCTACATAACAGTCACGGTTTGCTAGGAGTGTGGACTCATCACCCCTCAATACTAAACCGCGACAAGGTCTGTTTTACATCCTCCAAAAATTAGAAAGTGATTGGAAACTTGACAGCCGATTACTTTTTTTTTCAAAATGAAAATTTTCCAAACTCACTTTAACACTCAATCCAAGCTCTTGAAATTCGCCAAAATAAGTAAGCCATCTTGCCACTGAAAGTAGGTCATTCTCCCAAATAATGAAAGATTCTCGGATTCCAACAGTTGTTATTTTATTATAATCATAACTTTTGAGTTCTCGGAACTCGCCGAGATTCATAAAACGGCTCATTTTTTGTAAGCGATTACGATCTACAAAATTTT</canonical>
            <polymorphic>CAATATCTGAAAAAAACCCTATTTTTCTCATGTTTTCATTACAAAAGCAAACAAAAGGTCTTTCAGAAATTGGCAAATGGCTAAAAAACTTGGAGTTTTCAATAAACTCTGTAAATGCAAATCTCTGTAGCGCCCTCTCCCGATGGCACGACCTTATGTATTAGCCTAGCGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCTCCTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAATCATTATCTGACCAGTTCTTCCATCCTGCAGTCTTGTAGGATGGTTGTTCCRTTCACTCGCTCCTTCCGGTAACTGACACTAACATTTACTAATACGTACTTGCCCAGCAAGGTCCTATATGGCCCAGCTTGTACTATGATGAACCCAATGTGATACAATCCTTGTCTACTAAACACTCACAACGTCTGCTACATAACAGTCACGGTTTGCTAGGAGTGTGGACTCATCACCCCTCAATACTAAACCGCGACAAGGTCTGTTTTACATCCTCCAAAAATTAGAAAGTGATTGGAAACTTGACAGCCGATTACTTTTTTTTTCAAAATGAAAATTTTCCAAACTCACTTTAACACTCAATCCAAGCTCTTGAAATTCGCCAAAATAAGTAAGCCATCTTGCCACTGAAAGTAGGTCATTCTCCCAAATAATGAAAGATTCTCGGATTCCAACAGTTGTTATTTTATTATAATCATAACTTTTGAGTTCTCGGAACTCGCCGAGATTCATAAAACGGCTCATTTTTTGTAAGCGATTACGATCTACAAAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 331 113 54</canonical_bands>
                <polymorphic_bands>615 331 54</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTAATCATTATCTGACCAGTTC</pcr_primer_p1>
		<pcr_primer_p2>TTAGTATTGAGGGGTGATGAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGTAATCATTATCTGACCAGTTCTTCCATCCTGCAGTCTTGTAGGATGGTTGTTCCGTTCACTCGCTCCTTCCGGTAACTGACACTAACATTTACTAATACGTACTTGCCCAGCAAGGTCCTATATGGCCCAGCTTGTACTATGATGAACCCAATGTGATACAATCCTTGTCTACTAAACACTCACAACGTCTGCTACATAACAGTCACGGTTTGCTAGGAGTGTGGACTCATCACCCCTCAATACTAA</canonical_amplicon>
		<polymorphic_amplicon>TTGTAATCATTATCTGACCAGTTCTTCCATCCTGCAGTCTTGTAGGATGGTTGTTCCRTTCACTCGCTCCTTCCGGTAACTGACACTAACATTTACTAATACGTACTTGCCCAGCAAGGTCCTATATGGCCCAGCTTGTACTATGATGAACCCAATGTGATACAATCCTTGTCTACTAAACACTCACAACGTCTGCTACATAACAGTCACGGTTTGCTAGGAGTGTGGACTCATCACCCCTCAATACTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26847</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>673497</contig_pos>
        <strand>+</strand>
        <context>CACTAACATT[C/T]ACTAATACGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGATGGTTGTTCCGTTCACTCGCTCCTTCCGGTAACTGACACTAACATT</left_flank>
        <right_flank>ACTAATACGTACTTGCCCAGCAAGGTCCTATATGGCCCAGCTTGTACTAT</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTACAAAAGCAAACAAAAGGTCTTTCAGAAATTGGCAAATGGCTAAAAAACTTGGAGTTTTCAATAAACTCTGTAAATGCAAATCTCTGTAGCGCCCTCTCCCGATGGCACGACCTTATGTATTAGCCTAGCGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCTCCTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAATCATTATCTGACCAGTTCTTCCATCCTGCAGTCTTGTAGGATGGTTGTTCCGTTCACTCGCTCCTTCCGGTAACTGACACTAACATTTACTAATACGTACTTGCCCAGCAAGGTCCTATATGGCCCAGCTTGTACTATGATGAACCCAATGTGATACAATCCTTGTCTACTAAACACTCACAACGTCTGCTACATAACAGTCACGGTTTGCTAGGAGTGTGGACTCATCACCCCTCAATACTAAACCGCGACAAGGTCTGTTTTACATCCTCCAAAAATTAGAAAGTGATTGGAAACTTGACAGCCGATTACTTTTTTTTTCAAAATGAAAATTTTCCAAACTCACTTTAACACTCAATCCAAGCTCTTGAAATTCGCCAAAATAAGTAAGCCATCTTGCCACTGAAAGTAGGTCATTCTCCCAAATAATGAAAGATTCTCGGATTCCAACAGTTGTTATTTTATTATAATCATAACTTTTGAGTTCTCGGAACTCGCCGAGATTCATAAAACGGCTCATTTTTTGTAAGCGATTACGATCTACAAAATTTTGATGATATTGCAGAATTAGTTTGGCCTTTTCCAGAA</canonical>
            <polymorphic>CATTACAAAAGCAAACAAAAGGTCTTTCAGAAATTGGCAAATGGCTAAAAAACTTGGAGTTTTCAATAAACTCTGTAAATGCAAATCTCTGTAGCGCCCTCTCCCGATGGCACGACCTTATGTATTAGCCTAGCGGGTCACATGGAGCTACGTCATCGGAAGCCTACAGTCACCCAATACACCGAGGAAACGTCTCTAGACCTGTCAAGCTGCCCACAGGAGTCTGCGTGTCCCACCATCGCGCACACTCTCGCCCACCAGGAGGTGCGCTCCACTGAGACTGCTCTACAGGACCTGCGCCGAATGGGACAACAACCGCCAACCAGGACCAGACGCACTCTCTCCATTCTCTATGATCTCTCCTTTCCTTGTCTCTGCGTCTCTCGCATCACTTATCACTGATTCATTGTAATCATTATCTGACCAGTTCTTCCATCCTGCAGTCTTGTAGGATGGTTGTTCCGTTCACTCGCTCCTTCCGGTAACTGACACTAACATTYACTAATACGTACTTGCCCAGCAAGGTCCTATATGGCCCAGCTTGTACTATGATGAACCCAATGTGATACAATCCTTGTCTACTAAACACTCACAACGTCTGCTACATAACAGTCACGGTTTGCTAGGAGTGTGGACTCATCACCCCTCAATACTAAACCGCGACAAGGTCTGTTTTACATCCTCCAAAAATTAGAAAGTGATTGGAAACTTGACAGCCGATTACTTTTTTTTTCAAAATGAAAATTTTCCAAACTCACTTTAACACTCAATCCAAGCTCTTGAAATTCGCCAAAATAAGTAAGCCATCTTGCCACTGAAAGTAGGTCATTCTCCCAAATAATGAAAGATTCTCGGATTCCAACAGTTGTTATTTTATTATAATCATAACTTTTGAGTTCTCGGAACTCGCCGAGATTCATAAAACGGCTCATTTTTTGTAAGCGATTACGATCTACAAAATTTTGATGATATTGCAGAATTAGTTTGGCCTTTTCCAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTAATCATTATCTGACCAGTTC</pcr_primer_p1>
		<pcr_primer_p2>TTAGTATTGAGGGGTGATGAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGTAATCATTATCTGACCAGTTCTTCCATCCTGCAGTCTTGTAGGATGGTTGTTCCGTTCACTCGCTCCTTCCGGTAACTGACACTAACATTTACTAATACGTACTTGCCCAGCAAGGTCCTATATGGCCCAGCTTGTACTATGATGAACCCAATGTGATACAATCCTTGTCTACTAAACACTCACAACGTCTGCTACATAACAGTCACGGTTTGCTAGGAGTGTGGACTCATCACCCCTCAATACTAA</canonical_amplicon>
		<polymorphic_amplicon>TTGTAATCATTATCTGACCAGTTCTTCCATCCTGCAGTCTTGTAGGATGGTTGTTCCGTTCACTCGCTCCTTCCGGTAACTGACACTAACATTYACTAATACGTACTTGCCCAGCAAGGTCCTATATGGCCCAGCTTGTACTATGATGAACCCAATGTGATACAATCCTTGTCTACTAAACACTCACAACGTCTGCTACATAACAGTCACGGTTTGCTAGGAGTGTGGACTCATCACCCCTCAATACTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26848</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>688376</contig_pos>
        <strand>+</strand>
        <context>GATAAACTGA[C/G]GTTACGAGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGA</left_flank>
        <right_flank>GTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTACGGTTAAACTTTAATAAACTGCATTTCCAGTTTGAATGGTCGTTTTCCAGCACTATACGGCATGATCTCTCTGGTTGACAGCTCGCCATGTGGTTGGAATTTATATCGGAGTAGGAGGTTTCCGAAGATCTGAGAAAAAACTTTAGTTTTTCTTTATAAGTCTGTGGACCTACCAAATAAAGTTCGGATCTTGCCAATGACTCCCCGAGACATGAACGCTTTCCTAAACCAAATGGTATCACTTTTTGAAGAAGCTTCTCATCCCTTATGAATCTTTCTGGATCGAATTTCTCTGGATGTTCAAAAACTGTTTCATTGACATGAAGAGCGCTCAATTGAGCCGTCACCAGTGCTCCGGAATCCACCATATGCCCTCCCATATAGGTTGGCTCATTGTTCCATCTCCAGAAGTTGACATTTAGAATCGAAGCGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAG</canonical>
            <polymorphic>GTACGGTTAAACTTTAATAAACTGCATTTCCAGTTTGAATGGTCGTTTTCCAGCACTATACGGCATGATCTCTCTGGTTGACAGCTCGCCATGTGGTTGGAATTTATATCGGAGTAGGAGGTTTCCGAAGATCTGAGAAAAAACTTTAGTTTTTCTTTATAAGTCTGTGGACCTACCAAATAAAGTTCGGATCTTGCCAATGACTCCCCGAGACATGAACGCTTTCCTAAACCAAATGGTATCACTTTTTGAAGAAGCTTCTCATCCCTTATGAATCTTTCTGGATCGAATTTCTCTGGATGTTCAAAAACTGTTTCATTGACATGAAGAGCGCTCAATTGAGCCGTCACCAGTGCTCCGGAATCCACCATATGCCCTCCCATATAGGTTGGCTCATTGTTCCATCTCCAGAAGTTGACATTTAGAATCGAAGCGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGASGTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>446 438 61 55</canonical_bands>
                <polymorphic_bands>507 438 55</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATCTCCAGAAGTTGACATTTAG</pcr_primer_p1>
		<pcr_primer_p2>GATTTTGGACTTGTGGATTACT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CATCTCCAGAAGTTGACATTTAGAATCGAAGCGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATC</canonical_amplicon>
		<polymorphic_amplicon>CATCTCCAGAAGTTGACATTTAGAATCGAAGCGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGASGTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26849</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>688406</contig_pos>
        <strand>+</strand>
        <context>GTTATTTCGA[A/T]CARTTCTGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGA</left_flank>
        <right_flank>CAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTTTGAATGGTCGTTTTCCAGCACTATACGGCATGATCTCTCTGGTTGACAGCTCGCCATGTGGTTGGAATTTATATCGGAGTAGGAGGTTTCCGAAGATCTGAGAAAAAACTTTAGTTTTTCTTTATAAGTCTGTGGACCTACCAAATAAAGTTCGGATCTTGCCAATGACTCCCCGAGACATGAACGCTTTCCTAAACCAAATGGTATCACTTTTTGAAGAAGCTTCTCATCCCTTATGAATCTTTCTGGATCGAATTTCTCTGGATGTTCAAAAACTGTTTCATTGACATGAAGAGCGCTCAATTGAGCCGTCACCAGTGCTCCGGAATCCACCATATGCCCTCCCATATAGGTTGGCTCATTGTTCCATCTCCAGAAGTTGACATTTAGAATCGAAGCGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTT</canonical>
            <polymorphic>CAGTTTGAATGGTCGTTTTCCAGCACTATACGGCATGATCTCTCTGGTTGACAGCTCGCCATGTGGTTGGAATTTATATCGGAGTAGGAGGTTTCCGAAGATCTGAGAAAAAACTTTAGTTTTTCTTTATAAGTCTGTGGACCTACCAAATAAAGTTCGGATCTTGCCAATGACTCCCCGAGACATGAACGCTTTCCTAAACCAAATGGTATCACTTTTTGAAGAAGCTTCTCATCCCTTATGAATCTTTCTGGATCGAATTTCTCTGGATGTTCAAAAACTGTTTCATTGACATGAAGAGCGCTCAATTGAGCCGTCACCAGTGCTCCGGAATCCACCATATGCCCTCCCATATAGGTTGGCTCATTGTTCCATCTCCAGAAGTTGACATTTAGAATCGAAGCGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAWCAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>496 385 90 29</canonical_bands>
                <polymorphic_bands>881 90 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATCTCCAGAAGTTGACATTTAG</pcr_primer_p1>
		<pcr_primer_p2>GATTTTGGACTTGTGGATTACT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CATCTCCAGAAGTTGACATTTAGAATCGAAGCGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATC</canonical_amplicon>
		<polymorphic_amplicon>CATCTCCAGAAGTTGACATTTAGAATCGAAGCGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAWCAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26850</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>688409</contig_pos>
        <strand>+</strand>
        <context>ATTTCGAWCA[A/G]TTCTGCTCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACA</left_flank>
        <right_flank>TTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAATGGTCGTTTTCCAGCACTATACGGCATGATCTCTCTGGTTGACAGCTCGCCATGTGGTTGGAATTTATATCGGAGTAGGAGGTTTCCGAAGATCTGAGAAAAAACTTTAGTTTTTCTTTATAAGTCTGTGGACCTACCAAATAAAGTTCGGATCTTGCCAATGACTCCCCGAGACATGAACGCTTTCCTAAACCAAATGGTATCACTTTTTGAAGAAGCTTCTCATCCCTTATGAATCTTTCTGGATCGAATTTCTCTGGATGTTCAAAAACTGTTTCATTGACATGAAGAGCGCTCAATTGAGCCGTCACCAGTGCTCCGGAATCCACCATATGCCCTCCCATATAGGTTGGCTCATTGTTCCATCTCCAGAAGTTGACATTTAGAATCGAAGCGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCT</canonical>
            <polymorphic>TTTGAATGGTCGTTTTCCAGCACTATACGGCATGATCTCTCTGGTTGACAGCTCGCCATGTGGTTGGAATTTATATCGGAGTAGGAGGTTTCCGAAGATCTGAGAAAAAACTTTAGTTTTTCTTTATAAGTCTGTGGACCTACCAAATAAAGTTCGGATCTTGCCAATGACTCCCCGAGACATGAACGCTTTCCTAAACCAAATGGTATCACTTTTTGAAGAAGCTTCTCATCCCTTATGAATCTTTCTGGATCGAATTTCTCTGGATGTTCAAAAACTGTTTCATTGACATGAAGAGCGCTCAATTGAGCCGTCACCAGTGCTCCGGAATCCACCATATGCCCTCCCATATAGGTTGGCTCATTGTTCCATCTCCAGAAGTTGACATTTAGAATCGAAGCGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACARTTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>272 188 130 107 88 67 66 48 24 10</canonical_bands>
                <polymorphic_bands>272 188 130 112 107 67 66 48 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATCTCCAGAAGTTGACATTTAG</pcr_primer_p1>
		<pcr_primer_p2>GATTTTGGACTTGTGGATTACT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CATCTCCAGAAGTTGACATTTAGAATCGAAGCGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATC</canonical_amplicon>
		<polymorphic_amplicon>CATCTCCAGAAGTTGACATTTAGAATCGAAGCGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACARTTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26851</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>688439</contig_pos>
        <strand>+</strand>
        <context>ATGAATTTAG[A/G]ATGTAGGAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAG</left_flank>
        <right_flank>ATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGATCTCTCTGGTTGACAGCTCGCCATGTGGTTGGAATTTATATCGGAGTAGGAGGTTTCCGAAGATCTGAGAAAAAACTTTAGTTTTTCTTTATAAGTCTGTGGACCTACCAAATAAAGTTCGGATCTTGCCAATGACTCCCCGAGACATGAACGCTTTCCTAAACCAAATGGTATCACTTTTTGAAGAAGCTTCTCATCCCTTATGAATCTTTCTGGATCGAATTTCTCTGGATGTTCAAAAACTGTTTCATTGACATGAAGAGCGCTCAATTGAGCCGTCACCAGTGCTCCGGAATCCACCATATGCCCTCCCATATAGGTTGGCTCATTGTTCCATCTCCAGAAGTTGACATTTAGAATCGAAGCGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTT</canonical>
            <polymorphic>CATGATCTCTCTGGTTGACAGCTCGCCATGTGGTTGGAATTTATATCGGAGTAGGAGGTTTCCGAAGATCTGAGAAAAAACTTTAGTTTTTCTTTATAAGTCTGTGGACCTACCAAATAAAGTTCGGATCTTGCCAATGACTCCCCGAGACATGAACGCTTTCCTAAACCAAATGGTATCACTTTTTGAAGAAGCTTCTCATCCCTTATGAATCTTTCTGGATCGAATTTCTCTGGATGTTCAAAAACTGTTTCATTGACATGAAGAGCGCTCAATTGAGCCGTCACCAGTGCTCCGGAATCCACCATATGCCCTCCCATATAGGTTGGCTCATTGTTCCATCTCCAGAAGTTGACATTTAGAATCGAAGCGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAGRATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCTCCAGAAGTTGACATTTAG</pcr_primer_p1>
		<pcr_primer_p2>GATTTTGGACTTGTGGATTACT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CATCTCCAGAAGTTGACATTTAGAATCGAAGCGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATC</canonical_amplicon>
		<polymorphic_amplicon>CATCTCCAGAAGTTGACATTTAGAATCGAAGCGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAGRATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26852</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>688521</contig_pos>
        <strand>+</strand>
        <context>CCAAAATCAT[A/T]GTCTTCAAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATCAT</left_flank>
        <right_flank>GTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGTTTTTCTTTATAAGTCTGTGGACCTACCAAATAAAGTTCGGATCTTGCCAATGACTCCCCGAGACATGAACGCTTTCCTAAACCAAATGGTATCACTTTTTGAAGAAGCTTCTCATCCCTTATGAATCTTTCTGGATCGAATTTCTCTGGATGTTCAAAAACTGTTTCATTGACATGAAGAGCGCTCAATTGAGCCGTCACCAGTGCTCCGGAATCCACCATATGCCCTCCCATATAGGTTGGCTCATTGTTCCATCTCCAGAAGTTGACATTTAGAATCGAAGCGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGT</canonical>
            <polymorphic>TTAGTTTTTCTTTATAAGTCTGTGGACCTACCAAATAAAGTTCGGATCTTGCCAATGACTCCCCGAGACATGAACGCTTTCCTAAACCAAATGGTATCACTTTTTGAAGAAGCTTCTCATCCCTTATGAATCTTTCTGGATCGAATTTCTCTGGATGTTCAAAAACTGTTTCATTGACATGAAGAGCGCTCAATTGAGCCGTCACCAGTGCTCCGGAATCCACCATATGCCCTCCCATATAGGTTGGCTCATTGTTCCATCTCCAGAAGTTGACATTTAGAATCGAAGCGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATCATWGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGCCTTTTCCATGAATTTAG</pcr_primer_p1>
		<pcr_primer_p2>GATGAGAACAACTTCCAAGACTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATC</canonical_amplicon>
		<polymorphic_amplicon>CTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATCATWGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26853</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>688553</contig_pos>
        <strand>+</strand>
        <context>AAAAATAAAG[C/G]TTTTTTYGAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAG</left_flank>
        <right_flank>TTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTC</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATAAAGTTCGGATCTTGCCAATGACTCCCCGAGACATGAACGCTTTCCTAAACCAAATGGTATCACTTTTTGAAGAAGCTTCTCATCCCTTATGAATCTTTCTGGATCGAATTTCTCTGGATGTTCAAAAACTGTTTCATTGACATGAAGAGCGCTCAATTGAGCCGTCACCAGTGCTCCGGAATCCACCATATGCCCTCCCATATAGGTTGGCTCATTGTTCCATCTCCAGAAGTTGACATTTAGAATCGAAGCGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAG</canonical>
            <polymorphic>AAATAAAGTTCGGATCTTGCCAATGACTCCCCGAGACATGAACGCTTTCCTAAACCAAATGGTATCACTTTTTGAAGAAGCTTCTCATCCCTTATGAATCTTTCTGGATCGAATTTCTCTGGATGTTCAAAAACTGTTTCATTGACATGAAGAGCGCTCAATTGAGCCGTCACCAGTGCTCCGGAATCCACCATATGCCCTCCCATATAGGTTGGCTCATTGTTCCATCTCCAGAAGTTGACATTTAGAATCGAAGCGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGSTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>375 318 126 101 80</canonical_bands>
                <polymorphic_bands>375 318 227 80</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>360 152 101 99 86 80 49 31 27 15</canonical_bands>
                <polymorphic_bands>360 152 128 99 86 80 49 31 15</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 419 78</canonical_bands>
                <polymorphic_bands>922 78</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATCCACAAGTCCAAAATCAT</pcr_primer_p1>
		<pcr_primer_p2>TCTTTATTGAAAGGTGAGATACG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGA</canonical_amplicon>
		<polymorphic_amplicon>TAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGSTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26854</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>688809</contig_pos>
        <strand>+</strand>
        <context>GACCATTTCT[A/C]ATTTTTTCRA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCT</left_flank>
        <right_flank>ATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCAT</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAA</canonical>
            <polymorphic>CGTGACGTTGAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTMATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTCTTGGAAGTTGTTCTCATC</pcr_primer_p1>
		<pcr_primer_p2>ACATTTTCTCCATTTGATATGAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGT</canonical_amplicon>
		<polymorphic_amplicon>TAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTMATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26855</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>688818</contig_pos>
        <strand>+</strand>
        <context>TMATTTTTTC[A/G]AAACGTCTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTC</left_flank>
        <right_flank>AAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTT</canonical>
            <polymorphic>GAATTTCTCCAATCACAGCGTTCAAGTATGGTGTCTTGGGTCTATCGGATAAACTGACGTTACGAGATCCATTTTCAGTTATTTCGAACAATTCTGCTCTAGCCTTTTCCATGAATTTAGAATGTAGGAGGAGCTGGTTGAAACCGGAAATCAGAGTGGTTGTGGTAGTTTCCTGTCCAGTAATCCACAAGTCCAAAATCATTGTCTTCAAGGATTCAACACTAAAAAATAAAGCTTTTTTCGACTAAGTCTTCAAGTAAGCCTACTTGTAGTCCTCATTCTCTCCATCTTTCTGCATTTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCRAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 385 84 29</canonical_bands>
                <polymorphic_bands>531 385 84</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>375 157 126 101 97 85 30 29</canonical_bands>
                <polymorphic_bands>375 157 155 101 97 85 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGTCTTGGAAGTTGTTCTCATC</pcr_primer_p1>
		<pcr_primer_p2>ACATTTTCTCCATTTGATATGAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGT</canonical_amplicon>
		<polymorphic_amplicon>TAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCRAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26856</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>689116</contig_pos>
        <strand>+</strand>
        <context>ATGTAGGAAT[A/G]WTTTGTTTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAAT</left_flank>
        <right_flank>TTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACT</canonical>
            <polymorphic>TTTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATRTTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 462 37</canonical_bands>
                <polymorphic_bands>538 462</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACTTCCTACGGTGAGATCAA</pcr_primer_p1>
		<pcr_primer_p2>ACGTTTAGGAATATGGGAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGT</canonical_amplicon>
		<polymorphic_amplicon>ATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATRTTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26857</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>689117</contig_pos>
        <strand>+</strand>
        <context>TGTAGGAATR[A/T]TTTGTTTGCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATA</left_flank>
        <right_flank>TTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTG</canonical>
            <polymorphic>TTCCACAAAAACGCATCGGTATAGTCTTGGAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATAWTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 461 37</canonical_bands>
                <polymorphic_bands>539 461</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACTTCCTACGGTGAGATCAA</pcr_primer_p1>
		<pcr_primer_p2>ACGTTTAGGAATATGGGAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGT</canonical_amplicon>
		<polymorphic_amplicon>ATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATAWTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26858</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>689146</contig_pos>
        <strand>+</strand>
        <context>AACGCCAGAG[A/G]GGCCGCTCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAG</left_flank>
        <right_flank>GGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAAT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGG</canonical>
            <polymorphic>GAAGTTGTTCTCATCGATCACATACCTTCCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGRGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 299 172 29</canonical_bands>
                <polymorphic_bands>799 172 29</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACTTCCTACGGTGAGATCAA</pcr_primer_p1>
		<pcr_primer_p2>ACGTTTAGGAATATGGGAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGT</canonical_amplicon>
		<polymorphic_amplicon>ATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGRGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26859</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>689174</contig_pos>
        <strand>+</strand>
        <context>TCAACTCCTC[A/C]ATTATTCTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTC</left_flank>
        <right_flank>ATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAA</canonical>
            <polymorphic>CCAGCTTTGATCTCATCGATTCTGAAAAAAATTATTTTGAATTTCTGATAGCGTATCTCACCTTTCAATAAAGAATCTCACCTTTTCAATGCTTCCTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCMATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTCAGTTAAGGAAATGTAGGA</pcr_primer_p1>
		<pcr_primer_p2>GAGAGATGAGAAGTAAGAGGTCA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>GTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTC</canonical_amplicon>
		<polymorphic_amplicon>GTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCMATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26860</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>689269</contig_pos>
        <strand>+</strand>
        <context>TCCCCATTTG[C/T]RGTCAGAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTG</left_flank>
        <right_flank>GGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTT</right_flank>
        <qual_score>145</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACT</canonical>
            <polymorphic>CTTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGYGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTCAGTTAAGGAAATGTAGGA</pcr_primer_p1>
		<pcr_primer_p2>GAGAGATGAGAAGTAAGAGGTCA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>GTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTC</canonical_amplicon>
		<polymorphic_amplicon>GTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGYGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26861</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>689270</contig_pos>
        <strand>+</strand>
        <context>CCCCATTTGY[A/G]GTCAGAATTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGC</left_flank>
        <right_flank>GTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTG</canonical>
            <polymorphic>TTTGCCGCGAATTGCTTCGAACTCTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCRGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>497 335 168</canonical_bands>
                <polymorphic_bands>832 168</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGTCAGTTAAGGAAATGTAGGA</pcr_primer_p1>
		<pcr_primer_p2>GAGAGATGAGAAGTAAGAGGTCA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>GTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTC</canonical_amplicon>
		<polymorphic_amplicon>GTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCRGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26862</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>689293</contig_pos>
        <strand>+</strand>
        <context>ATGTCTTCTG[A/G]AAATTCaaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTG</left_flank>
        <right_flank>AAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGT</canonical>
            <polymorphic>CTCTTGACCATTTCTCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGRAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>494 342 161 3</canonical_bands>
                <polymorphic_bands>836 161 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGTCAGTTAAGGAAATGTAGGA</pcr_primer_p1>
		<pcr_primer_p2>CGAGAGATGAGAAGTAAGAGGT</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>GTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCG</canonical_amplicon>
		<polymorphic_amplicon>GTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGRAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26863</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>689307</contig_pos>
        <strand></strand>
        <context>TTCaaaattt[A/T]aaaaytamtt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTT</left_flank>
        <right_flank>AAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTT</canonical>
            <polymorphic>TCATTTTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTWAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 291 172 35</canonical_bands>
                <polymorphic_bands>674 291 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTATTCTCGTCTCCATCAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAACATCACACGAGGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTWAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26864</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>689312</contig_pos>
        <strand></strand>
        <context>aatttwaaaa[T/C]tamttttttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAA</left_flank>
        <right_flank>TATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAAC</canonical>
            <polymorphic>TTTTCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAAYTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>277 186 120 91 87 76 54 37 19 11 11 9 8 7 7</canonical_bands>
                <polymorphic_bands>277 186 120 91 87 76 62 37 19 11 11 9 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTATTCTCGTCTCCATCAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAACATCACACGAGGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAAYTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26865</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>689315</contig_pos>
        <strand>+</strand>
        <context>ttwaaaayta[A/C]tttttttCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTA</left_flank>
        <right_flank>TTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCA</canonical>
            <polymorphic>TCGAAACGTCTTGGGAAGAAGTTTTTCAGAATCCACACTGGCATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTAMTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTATTCTCGTCTCCATCAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAACATCACACGAGGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTAMTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26866</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>689357</contig_pos>
        <strand></strand>
        <context>GGAAAATCGG[C/T]GMATGAAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGG</left_flank>
        <right_flank>GAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAAT</canonical>
            <polymorphic>ATTGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGYGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTATTCTCGTCTCCATCAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAACATCACACGAGGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGYGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26867</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>689359</contig_pos>
        <strand></strand>
        <context>AAAATCGGYG[A/C]ATGAAATTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCG</left_flank>
        <right_flank>ATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGA</canonical>
            <polymorphic>TGTCATATCAAATGGAGAAAATGTTTCAAAAGAAGCATCCATGACTTCCTTGATTTTGAGAAAATCATTTTTGTTGTGTTCCTCGAATCGCTTGCCAACCAGGATACTGTTGATGATACTTCCTACGGTGAGATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGMATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTATTCTCGTCTCCATCAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAACATCACACGAGGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGMATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26868</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>689490</contig_pos>
        <strand>+</strand>
        <context>CTGAAATTAG[A/C]AGAATYGARG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAG</left_flank>
        <right_flank>AGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAA</canonical>
            <polymorphic>GATCAAAGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGMAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGTGTGATGTTTCGTAATC</pcr_primer_p1>
		<pcr_primer_p2>AGTACCAGAAAGTATCCCGACTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</canonical_amplicon>
		<polymorphic_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGMAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26869</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>689496</contig_pos>
        <strand>+</strand>
        <context>TTAGMAGAAT[C/T]GARGCATAWT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAAT</left_flank>
        <right_flank>GAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAG</canonical>
            <polymorphic>AGAATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATYGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>277 198 120 87 76 54 43 37 34 19 11 11 9 8 7 7 2</canonical_bands>
                <polymorphic_bands>277 198 120 87 76 54 43 37 34 20 19 11 8 7 7 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCGTGTGATGTTTCGTAATC</pcr_primer_p1>
		<pcr_primer_p2>AGTACCAGAAAGTATCCCGACTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</canonical_amplicon>
		<polymorphic_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATYGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26870</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>689499</contig_pos>
        <strand>+</strand>
        <context>GMAGAATYGA[A/G]GCATAWTTYG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGA</left_flank>
        <right_flank>GCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAGACA</canonical>
            <polymorphic>ATTCTGCTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGARGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGTGTGATGTTTCGTAATC</pcr_primer_p1>
		<pcr_primer_p2>AGTACCAGAAAGTATCCCGACTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</canonical_amplicon>
		<polymorphic_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGARGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26871</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>689505</contig_pos>
        <strand>+</strand>
        <context>TYGARGCATA[A/T]TTYGAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATA</left_flank>
        <right_flank>TTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAGACATTTTTG</canonical>
            <polymorphic>CTGCTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAWTTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAGACATTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>270 198 120 87 76 54 52 37 34 19 11 11 9 8 7 7</canonical_bands>
                <polymorphic_bands>270 198 120 87 87 54 52 37 34 19 11 9 8 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCGTGTGATGTTTCGTAATC</pcr_primer_p1>
		<pcr_primer_p2>AGTACCAGAAAGTATCCCGACTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</canonical_amplicon>
		<polymorphic_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAWTTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26872</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>689508</contig_pos>
        <strand>+</strand>
        <context>ARGCATAWTT[C/T]GAAAAATGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATT</left_flank>
        <right_flank>GAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAGACATTTTTGAGA</canonical>
            <polymorphic>CTTGGGTAGTGGTGACTCCGTTTACAGCGGCTTTGTCAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTYGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAGACATTTTTGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGTGTGATGTTTCGTAATC</pcr_primer_p1>
		<pcr_primer_p2>AGTACCAGAAAGTATCCCGACTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</canonical_amplicon>
		<polymorphic_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTYGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26873</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>689544</contig_pos>
        <strand>+</strand>
        <context>AATCCAAAGT[A/C]GAAACRACWC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGT</left_flank>
        <right_flank>GAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAGACATTTTTGAGATTTTGAAGGGACTACCCGTTTTATATCTGTCGAGAA</canonical>
            <polymorphic>CAATGTCAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTMGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAGACATTTTTGAGATTTTGAAGGGACTACCCGTTTTATATCTGTCGAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 309 100 86 5</canonical_bands>
                <polymorphic_bands>809 100 86 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCGTGTGATGTTTCGTAATC</pcr_primer_p1>
		<pcr_primer_p2>AGTACCAGAAAGTATCCCGACTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</canonical_amplicon>
		<polymorphic_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTMGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26874</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>689550</contig_pos>
        <strand>+</strand>
        <context>AAGTMGAAAC[A/G]ACWCYYCCRG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAAC</left_flank>
        <right_flank>ACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAGACATTTTTGAGATTTTGAAGGGACTACCCGTTTTATATCTGTCGAGAAGCACTG</canonical>
            <polymorphic>CAGCACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACRACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAGACATTTTTGAGATTTTGAAGGGACTACCCGTTTTATATCTGTCGAGAAGCACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>500 464 36</canonical_bands>
                <polymorphic_bands>964 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCGTGTGATGTTTCGTAATC</pcr_primer_p1>
		<pcr_primer_p2>AGTACCAGAAAGTATCCCGACTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</canonical_amplicon>
		<polymorphic_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACRACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26875</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>689553</contig_pos>
        <strand>+</strand>
        <context>TMGAAACRAC[A/T]CYYCCRGTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGAC</left_flank>
        <right_flank>CCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAGACATTTTTGAGATTTTGAAGGGACTACCCGTTTTATATCTGTCGAGAAGCACTGAAT</canonical>
            <polymorphic>CACATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACWCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAGACATTTTTGAGATTTTGAAGGGACTACCCGTTTTATATCTGTCGAGAAGCACTGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>503 464 33</canonical_bands>
                <polymorphic_bands>967 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCGTGTGATGTTTCGTAATC</pcr_primer_p1>
		<pcr_primer_p2>AGTACCAGAAAGTATCCCGACTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</canonical_amplicon>
		<polymorphic_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACWCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26876</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>689555</contig_pos>
        <strand>+</strand>
        <context>GAAACRACWC[C/T]YCCRGTTGWS</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTC</left_flank>
        <right_flank>TCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAGACATTTTTGAGATTTTGAAGGGACTACCCGTTTTATATCTGTCGAGAAGCACTGAATGT</canonical>
            <polymorphic>CATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCYTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAGACATTTTTGAGATTTTGAAGGGACTACCCGTTTTATATCTGTCGAGAAGCACTGAATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGTGTGATGTTTCGTAATC</pcr_primer_p1>
		<pcr_primer_p2>AGTACCAGAAAGTATCCCGACTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</canonical_amplicon>
		<polymorphic_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCYTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26877</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>689556</contig_pos>
        <strand>+</strand>
        <context>AAACRACWCY[C/T]CCRGTTGWSY</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCC</left_flank>
        <right_flank>CCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAGACATTTTTGAGATTTTGAAGGGACTACCCGTTTTATATCTGTCGAGAAGCACTGAATGTA</canonical>
            <polymorphic>ATCTGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCYCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAGACATTTTTGAGATTTTGAAGGGACTACCCGTTTTATATCTGTCGAGAAGCACTGAATGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCGTGTGATGTTTCGTAATC</pcr_primer_p1>
		<pcr_primer_p2>AGTACCAGAAAGTATCCCGACTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</canonical_amplicon>
		<polymorphic_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCYCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26878</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>689559</contig_pos>
        <strand>+</strand>
        <context>CRACWCYYCC[A/G]GTTGWSYATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCC</left_flank>
        <right_flank>GTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAGACATTTTTGAGATTTTGAAGGGACTACCCGTTTTATATCTGTCGAGAAGCACTGAATGTAGCT</canonical>
            <polymorphic>TGTAAGTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCRGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAGACATTTTTGAGATTTTGAAGGGACTACCCGTTTTATATCTGTCGAGAAGCACTGAATGTAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCGTGTGATGTTTCGTAATC</pcr_primer_p1>
		<pcr_primer_p2>AGTACCAGAAAGTATCCCGACTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</canonical_amplicon>
		<polymorphic_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCRGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26879</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>689564</contig_pos>
        <strand>+</strand>
        <context>CYYCCRGTTG[A/T]SYATAGATAR</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTG</left_flank>
        <right_flank>GTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAGACATTTTTGAGATTTTGAAGGGACTACCCGTTTTATATCTGTCGAGAAGCACTGAATGTAGCTCAGCT</canonical>
            <polymorphic>GTGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGWGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAGACATTTTTGAGATTTTGAAGGGACTACCCGTTTTATATCTGTCGAGAAGCACTGAATGTAGCTCAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>184 182 110 103 81 62 53 50 40 24 24 22 21 20 17 3 2 2</canonical_bands>
                <polymorphic_bands>184 182 150 103 81 62 53 50 24 24 22 21 20 17 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCGTGTGATGTTTCGTAATC</pcr_primer_p1>
		<pcr_primer_p2>AGTACCAGAAAGTATCCCGACTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</canonical_amplicon>
		<polymorphic_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGWGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26880</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>689565</contig_pos>
        <strand>+</strand>
        <context>YYCCRGTTGW[C/G]YATAGATART</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGT</left_flank>
        <right_flank>TATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAGACATTTTTGAGATTTTGAAGGGACTACCCGTTTTATATCTGTCGAGAAGCACTGAATGTAGCTCAGCTA</canonical>
            <polymorphic>TGTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTSTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAGACATTTTTGAGATTTTGAAGGGACTACCCGTTTTATATCTGTCGAGAAGCACTGAATGTAGCTCAGCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>184 182 110 103 81 62 53 50 40 24 24 22 21 20 18 4 2</canonical_bands>
                <polymorphic_bands>184 182 150 103 81 62 53 50 24 24 22 21 20 18 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCGTGTGATGTTTCGTAATC</pcr_primer_p1>
		<pcr_primer_p2>AGTACCAGAAAGTATCCCGACTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</canonical_amplicon>
		<polymorphic_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTSTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26881</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>689566</contig_pos>
        <strand>+</strand>
        <context>YCCRGTTGWS[C/T]ATAGATARTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTG</left_flank>
        <right_flank>ATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAGACATTTTTGAGATTTTGAAGGGACTACCCGTTTTATATCTGTCGAGAAGCACTGAATGTAGCTCAGCTAG</canonical>
            <polymorphic>GTGGCATGTAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGYATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAGACATTTTTGAGATTTTGAAGGGACTACCCGTTTTATATCTGTCGAGAAGCACTGAATGTAGCTCAGCTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGTGTGATGTTTCGTAATC</pcr_primer_p1>
		<pcr_primer_p2>AGTACCAGAAAGTATCCCGACTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</canonical_amplicon>
		<polymorphic_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGYATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26882</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>689574</contig_pos>
        <strand></strand>
        <context>WSYATAGATA[G/A]TAMACAATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATA</left_flank>
        <right_flank>TAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAGACATTTTTGAGATTTTGAAGGGACTACCCGTTTTATATCTGTCGAGAAGCACTGAATGTAGCTCAGCTAGCTTGGGAA</canonical>
            <polymorphic>TAATATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATARTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAGACATTTTTGAGATTTTGAAGGGACTACCCGTTTTATATCTGTCGAGAAGCACTGAATGTAGCTCAGCTAGCTTGGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>351 309 189 151</canonical_bands>
                <polymorphic_bands>540 309 151</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCGTGTGATGTTTCGTAATC</pcr_primer_p1>
		<pcr_primer_p2>AGTACCAGAAAGTATCCCGACTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</canonical_amplicon>
		<polymorphic_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATARTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26883</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>689577</contig_pos>
        <strand></strand>
        <context>ATAGATARTA[A/C]ACAATTTGSG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTA</left_flank>
        <right_flank>ACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAGACATTTTTGAGATTTTGAAGGGACTACCCGTTTTATATCTGTCGAGAAGCACTGAATGTAGCTCAGCTAGCTTGGGAATTT</canonical>
            <polymorphic>TATTTTGAGACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAMACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAGACATTTTTGAGATTTTGAAGGGACTACCCGTTTTATATCTGTCGAGAAGCACTGAATGTAGCTCAGCTAGCTTGGGAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGTGTGATGTTTCGTAATC</pcr_primer_p1>
		<pcr_primer_p2>AGTACCAGAAAGTATCCCGACTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</canonical_amplicon>
		<polymorphic_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAMACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26884</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>689586</contig_pos>
        <strand></strand>
        <context>AMACAATTTG[C/G]GGTAAATTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTG</left_flank>
        <right_flank>GGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAGACATTTTTGAGATTTTGAAGGGACTACCCGTTTTATATCTGTCGAGAAGCACTGAATGTAGCTCAGCTAGCTTGGGAATTTGATTAAGCC</canonical>
            <polymorphic>ACTCGTGTCAGTTAAGGAAATGTAGGAATATTTTGTTTGCCAAAGGTTAAACGCCAGAGGGGCCGCTCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGSGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAGACATTTTTGAGATTTTGAAGGGACTACCCGTTTTATATCTGTCGAGAAGCACTGAATGTAGCTCAGCTAGCTTGGGAATTTGATTAAGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGTGTGATGTTTCGTAATC</pcr_primer_p1>
		<pcr_primer_p2>AGTACCAGAAAGTATCCCGACTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</canonical_amplicon>
		<polymorphic_amplicon>CTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGSGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26885</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>689652</contig_pos>
        <strand>+</strand>
        <context>TCTGGTACTG[C/T]CTTACGACTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTG</left_flank>
        <right_flank>CTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAGACATTTTTGAGATTTTGAAGGGACTACCCGTTTTATATCTGTCGAGAAGCACTGAATGTAGCTCAGCTAGCTTGGGAATTTGATTAAGCCTGTGCAGCAACAACTTCAGGACCTGTTGATAACGTTGATGGCTCACGCTTTCTTCTTTGCACCTCT</canonical>
            <polymorphic>TCACCTGGCATTCAACTCCTCCATTATTCTCGTCTCCATCAAATCCTTTCCCACTCCCATATTCCTAAACGTGAACAGCGCAAACCGTCTCATCTCCTGCCAATGATCCCCATTTGCGGTCAGAATTCCAATGTCTTCTGGAAATTCAAAATTTAAAAATTATTTTTTTTCTGACCTCTTACTTCTCATCTCTCGGAAAATCGGCGAATGAAATTTGTCGGCATACTTGTTGGCATTTTTTACGAAAACCTCGTGTGATGTTTCGTAATCGGCAATGCTCACATGAGGGATTGGACCAACCCACAAGGTAAAAATGTTTCCGTACCTCTGAAATTAGCAGAATTGAGGCATAATTTGAAAAATGCAAAACCTTTCTGAAAAAATCCAAAGTCGAAACGACTCCTCCGGTTGTGTATAGATAGTAAACAATTTGCGGTAAATTTCCAATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGYCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCAGCAGAAAATATAATCGAATGATTGAAGGATTGTATGAGAGCGAGGAAAGTTTGGTCTTTGAAAATGCCAAAGATTTATGATAATTTGTTTGATAACATTTCGAGTGTATTCGGAGAATTTTTCTAAATAGTTGTTCTGTTATAGATAGGGAAAATGAGACATTTTTGAGATTTTGAAGGGACTACCCGTTTTATATCTGTCGAGAAGCACTGAATGTAGCTCAGCTAGCTTGGGAATTTGATTAAGCCTGTGCAGCAACAACTTCAGGACCTGTTGATAACGTTGATGGCTCACGCTTTCTTCTTTGCACCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTAGTGGAAGAGAAACTGGTC</pcr_primer_p1>
		<pcr_primer_p2>TGACTGTAGCAGTTATAGCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>AATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGCCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCA</canonical_amplicon>
		<polymorphic_amplicon>AATTAGTGGAAGAGAAACTGGTCCTGGTGGTAGTCGGGATACTTTCTGGTACTGYCTTACGACTAACCAAGTTAGAAAAGTGAAAACAATTAGAACAAAAAACATGTTCAGTTCTTTATGTTTGAATTTTTCGGTCGCATGTTTATATACAAGACGGATGGTGTTGTCTACTGATAAGAAAAGGAAAAAAAAACGTTGTTATCAGTTGTTTTAACTCAAAAAGCTATAACTGCTACAGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26886</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>692641</contig_pos>
        <strand>+</strand>
        <context>TTTTTGTTGT[C/G]ATCAATCCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGT</left_flank>
        <right_flank>ATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAA</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCAGCAATATCAGATCCTCGTGTTACAGACACATAAATTGAAAAAAAATTGTGATCTTTGCAGGGAAAGATGTGCGCGGAGCCCCAAACTAGGAAAAGTCACAAAAAAAGCACAACAAAGAGATAGACAAAGTCTCTTCCATAAAAGCCGATTTTTTTCTGGCTTTGGAAATTTTGTGGTTCTTTTTTTAAAGTTTTCTTCCTGAGAGATATAACCGAAATATGGATAGTCCCTGCTCGATCGAAAAAGATGGGAATGTTACAATTTGTATGATAGAATCAATTGAAAAACTAGATGCGCAAAGCGCTCCATCTTTCGTCTTCGAGTTTAGAGAGGTTTGACTATAATCATTTTTAAGTCTTCGGATTTCAATTTTCAGTGGATAATTCTCATTATGTTCATTACTGGAGTCATCACTTCTTCATGCTGGATTCTTATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAG</canonical>
            <polymorphic>ATTTCAGCAATATCAGATCCTCGTGTTACAGACACATAAATTGAAAAAAAATTGTGATCTTTGCAGGGAAAGATGTGCGCGGAGCCCCAAACTAGGAAAAGTCACAAAAAAAGCACAACAAAGAGATAGACAAAGTCTCTTCCATAAAAGCCGATTTTTTTCTGGCTTTGGAAATTTTGTGGTTCTTTTTTTAAAGTTTTCTTCCTGAGAGATATAACCGAAATATGGATAGTCCCTGCTCGATCGAAAAAGATGGGAATGTTACAATTTGTATGATAGAATCAATTGAAAAACTAGATGCGCAAAGCGCTCCATCTTTCGTCTTCGAGTTTAGAGAGGTTTGACTATAATCATTTTTAAGTCTTCGGATTTCAATTTTCAGTGGATAATTCTCATTATGTTCATTACTGGAGTCATCACTTCTTCATGCTGGATTCTTATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTSATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCATTTTTAAGTCTTCGGATTT</pcr_primer_p1>
		<pcr_primer_p2>GTCTACATATCTCCACCTTTAAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCATTTTTAAGTCTTCGGATTTCAATTTTCAGTGGATAATTCTCATTATGTTCATTACTGGAGTCATCACTTCTTCATGCTGGATTCTTATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGAC</canonical_amplicon>
		<polymorphic_amplicon>ATCATTTTTAAGTCTTCGGATTTCAATTTTCAGTGGATAATTCTCATTATGTTCATTACTGGAGTCATCACTTCTTCATGCTGGATTCTTATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTSATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26887</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>692704</contig_pos>
        <strand>+</strand>
        <context>TAAGGAAATT[G/T]CTGTCAAACC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATT</left_flank>
        <right_flank>CTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGGGAAAGATGTGCGCGGAGCCCCAAACTAGGAAAAGTCACAAAAAAAGCACAACAAAGAGATAGACAAAGTCTCTTCCATAAAAGCCGATTTTTTTCTGGCTTTGGAAATTTTGTGGTTCTTTTTTTAAAGTTTTCTTCCTGAGAGATATAACCGAAATATGGATAGTCCCTGCTCGATCGAAAAAGATGGGAATGTTACAATTTGTATGATAGAATCAATTGAAAAACTAGATGCGCAAAGCGCTCCATCTTTCGTCTTCGAGTTTAGAGAGGTTTGACTATAATCATTTTTAAGTCTTCGGATTTCAATTTTCAGTGGATAATTCTCATTATGTTCATTACTGGAGTCATCACTTCTTCATGCTGGATTCTTATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAAAAAACG</canonical>
            <polymorphic>CAGGGAAAGATGTGCGCGGAGCCCCAAACTAGGAAAAGTCACAAAAAAAGCACAACAAAGAGATAGACAAAGTCTCTTCCATAAAAGCCGATTTTTTTCTGGCTTTGGAAATTTTGTGGTTCTTTTTTTAAAGTTTTCTTCCTGAGAGATATAACCGAAATATGGATAGTCCCTGCTCGATCGAAAAAGATGGGAATGTTACAATTTGTATGATAGAATCAATTGAAAAACTAGATGCGCAAAGCGCTCCATCTTTCGTCTTCGAGTTTAGAGAGGTTTGACTATAATCATTTTTAAGTCTTCGGATTTCAATTTTCAGTGGATAATTCTCATTATGTTCATTACTGGAGTCATCACTTCTTCATGCTGGATTCTTATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTKCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAAAAAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACTAATATTGAATCTCGAACT</pcr_primer_p1>
		<pcr_primer_p2>GTATATATCTTCCCACGAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATAC</canonical_amplicon>
		<polymorphic_amplicon>CCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTKCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26888</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>692746</contig_pos>
        <strand>+</strand>
        <context>TAGACATAGG[C/T]TTTTTTTGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGG</left_flank>
        <right_flank>TTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAAGCACAACAAAGAGATAGACAAAGTCTCTTCCATAAAAGCCGATTTTTTTCTGGCTTTGGAAATTTTGTGGTTCTTTTTTTAAAGTTTTCTTCCTGAGAGATATAACCGAAATATGGATAGTCCCTGCTCGATCGAAAAAGATGGGAATGTTACAATTTGTATGATAGAATCAATTGAAAAACTAGATGCGCAAAGCGCTCCATCTTTCGTCTTCGAGTTTAGAGAGGTTTGACTATAATCATTTTTAAGTCTTCGGATTTCAATTTTCAGTGGATAATTCTCATTATGTTCATTACTGGAGTCATCACTTCTTCATGCTGGATTCTTATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAAAAAACGCTCCATTGCTAATTGATCCGTTTCAGGAGCAAGAATGGCCGG</canonical>
            <polymorphic>AAAAAAAGCACAACAAAGAGATAGACAAAGTCTCTTCCATAAAAGCCGATTTTTTTCTGGCTTTGGAAATTTTGTGGTTCTTTTTTTAAAGTTTTCTTCCTGAGAGATATAACCGAAATATGGATAGTCCCTGCTCGATCGAAAAAGATGGGAATGTTACAATTTGTATGATAGAATCAATTGAAAAACTAGATGCGCAAAGCGCTCCATCTTTCGTCTTCGAGTTTAGAGAGGTTTGACTATAATCATTTTTAAGTCTTCGGATTTCAATTTTCAGTGGATAATTCTCATTATGTTCATTACTGGAGTCATCACTTCTTCATGCTGGATTCTTATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGYTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAAAAAACGCTCCATTGCTAATTGATCCGTTTCAGGAGCAAGAATGGCCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACTAATATTGAATCTCGAACT</pcr_primer_p1>
		<pcr_primer_p2>GTATATATCTTCCCACGAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATAC</canonical_amplicon>
		<polymorphic_amplicon>CCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGYTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26889</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>692779</contig_pos>
        <strand></strand>
        <context>ATACATTATT[T/C]CTCAAATATA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATT</left_flank>
        <right_flank>CTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGG</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCCATAAAAGCCGATTTTTTTCTGGCTTTGGAAATTTTGTGGTTCTTTTTTTAAAGTTTTCTTCCTGAGAGATATAACCGAAATATGGATAGTCCCTGCTCGATCGAAAAAGATGGGAATGTTACAATTTGTATGATAGAATCAATTGAAAAACTAGATGCGCAAAGCGCTCCATCTTTCGTCTTCGAGTTTAGAGAGGTTTGACTATAATCATTTTTAAGTCTTCGGATTTCAATTTTCAGTGGATAATTCTCATTATGTTCATTACTGGAGTCATCACTTCTTCATGCTGGATTCTTATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAAAAAACGCTCCATTGCTAATTGATCCGTTTCAGGAGCAAGAATGGCCGGCCGGACGCTGAAAAGAATCATGACCTGAATTCT</canonical>
            <polymorphic>CTTCCATAAAAGCCGATTTTTTTCTGGCTTTGGAAATTTTGTGGTTCTTTTTTTAAAGTTTTCTTCCTGAGAGATATAACCGAAATATGGATAGTCCCTGCTCGATCGAAAAAGATGGGAATGTTACAATTTGTATGATAGAATCAATTGAAAAACTAGATGCGCAAAGCGCTCCATCTTTCGTCTTCGAGTTTAGAGAGGTTTGACTATAATCATTTTTAAGTCTTCGGATTTCAATTTTCAGTGGATAATTCTCATTATGTTCATTACTGGAGTCATCACTTCTTCATGCTGGATTCTTATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTYCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAAAAAACGCTCCATTGCTAATTGATCCGTTTCAGGAGCAAGAATGGCCGGCCGGACGCTGAAAAGAATCATGACCTGAATTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACTAATATTGAATCTCGAACT</pcr_primer_p1>
		<pcr_primer_p2>GTATATATCTTCCCACGAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATAC</canonical_amplicon>
		<polymorphic_amplicon>CCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTYCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26890</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>692809</contig_pos>
        <strand>+</strand>
        <context>TTTCTTAYAA[C/T]TAGTTTCCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAA</left_flank>
        <right_flank>TAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAAATTTTGTGGTTCTTTTTTTAAAGTTTTCTTCCTGAGAGATATAACCGAAATATGGATAGTCCCTGCTCGATCGAAAAAGATGGGAATGTTACAATTTGTATGATAGAATCAATTGAAAAACTAGATGCGCAAAGCGCTCCATCTTTCGTCTTCGAGTTTAGAGAGGTTTGACTATAATCATTTTTAAGTCTTCGGATTTCAATTTTCAGTGGATAATTCTCATTATGTTCATTACTGGAGTCATCACTTCTTCATGCTGGATTCTTATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAAAAAACGCTCCATTGCTAATTGATCCGTTTCAGGAGCAAGAATGGCCGGCCGGACGCTGAAAAGAATCATGACCTGAATTCTGCTTGCCACGTGAAATTACGTTGTTTGAAG</canonical>
            <polymorphic>TGGAAATTTTGTGGTTCTTTTTTTAAAGTTTTCTTCCTGAGAGATATAACCGAAATATGGATAGTCCCTGCTCGATCGAAAAAGATGGGAATGTTACAATTTGTATGATAGAATCAATTGAAAAACTAGATGCGCAAAGCGCTCCATCTTTCGTCTTCGAGTTTAGAGAGGTTTGACTATAATCATTTTTAAGTCTTCGGATTTCAATTTTCAGTGGATAATTCTCATTATGTTCATTACTGGAGTCATCACTTCTTCATGCTGGATTCTTATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAYTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAAAAAACGCTCCATTGCTAATTGATCCGTTTCAGGAGCAAGAATGGCCGGCCGGACGCTGAAAAGAATCATGACCTGAATTCTGCTTGCCACGTGAAATTACGTTGTTTGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCAAGTTTAAAGGTGGAGATA</pcr_primer_p1>
		<pcr_primer_p2>AAGAACTCTCCTCCTTCTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>AACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTT</canonical_amplicon>
		<polymorphic_amplicon>AACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAYTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26891</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>692845</contig_pos>
        <strand>+</strand>
        <context>TATATACYGC[C/T]AAAAATTCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGC</left_flank>
        <right_flank>AAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAGAGATATAACCGAAATATGGATAGTCCCTGCTCGATCGAAAAAGATGGGAATGTTACAATTTGTATGATAGAATCAATTGAAAAACTAGATGCGCAAAGCGCTCCATCTTTCGTCTTCGAGTTTAGAGAGGTTTGACTATAATCATTTTTAAGTCTTCGGATTTCAATTTTCAGTGGATAATTCTCATTATGTTCATTACTGGAGTCATCACTTCTTCATGCTGGATTCTTATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAAAAAACGCTCCATTGCTAATTGATCCGTTTCAGGAGCAAGAATGGCCGGCCGGACGCTGAAAAGAATCATGACCTGAATTCTGCTTGCCACGTGAAATTACGTTGTTTGAAGACCGAGAAAACCATCGTTAAGACGTATCATATGGAT</canonical>
            <polymorphic>CTGAGAGATATAACCGAAATATGGATAGTCCCTGCTCGATCGAAAAAGATGGGAATGTTACAATTTGTATGATAGAATCAATTGAAAAACTAGATGCGCAAAGCGCTCCATCTTTCGTCTTCGAGTTTAGAGAGGTTTGACTATAATCATTTTTAAGTCTTCGGATTTCAATTTTCAGTGGATAATTCTCATTATGTTCATTACTGGAGTCATCACTTCTTCATGCTGGATTCTTATTCATCCCGGAACCACTAATATTGAATCTCGAACTTTGAAACGATCTATTTTTTGTTGTCATCAATCCTATAACTTTATTTCATTTTCCTGTATGAAAATTAATGTGAAAAATAAGGAAATTGCTGTCAAACCAAGTTTAAAGGTGGAGATATGTAGACATAGGTTTTTTTTGTTGATATTTCGTTAATACATTATTTCTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCYAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACTTATTACTCATCCCTCCCTTGACATAAAAGTCATGAAAAAGTTTCAAACGCAAATAGTGACGTGATTGCGAAACATTTCACCACAAGGGTATATAAACAGTAGGAAGAGTGAAGAGAAAGCGCCCGCTGGTCAGAGATGTTCGAGGAAATTTATTTCTGGTGAGTCTTGTTAAAAAACGCTCCATTGCTAATTGATCCGTTTCAGGAGCAAGAATGGCCGGCCGGACGCTGAAAAGAATCATGACCTGAATTCTGCTTGCCACGTGAAATTACGTTGTTTGAAGACCGAGAAAACCATCGTTAAGACGTATCATATGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAAATATAGTTCAAGGATTTCTTA</pcr_primer_p1>
		<pcr_primer_p2>AGTGAAAAGATGATAAAGGAACA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCAAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACT</canonical_amplicon>
		<polymorphic_amplicon>CTCAAATATAGTTCAAGGATTTCTTATAAGTAGTTTCCTCGGACTCGTGGGAAGATATATACCGCYAAAAATTCAAAAAAACTTCATAAAATTTCTTGTCTCCCCTCCTTCGAGCTAACGATCATACACCCTACGCCGCGACCAAAAGAAGGAGGAGAGTTCTTGCCCAAAAACATTTTTCTCCGTTATCACGCTCTTTCCAGTTTTGATTGTGTGTATCCTAATGTTCCTTTATCATCTTTTCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26892</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>702257</contig_pos>
        <strand>+</strand>
        <context>ACTAGAACTA[C/T]GGTTTCATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGCGAATTTTTTGAACTGATGTTTTTGCCGACCGTTGTGACTAGAACTA</left_flank>
        <right_flank>GGTTTCATTCACAGTCCGTTTTTGTTCCTGGAAGTAAACCTGAAAGTAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGGCGGCGAGTTCCTAGTCAAAATTCCTACTGTCACTATTTCCTGAAATTCTTGAAAACTGAGGCAACAGAGGACTGTTGGACGAATCAGGATCGAGGATTGCCGTGAAATTGAGAGTTATTCGAAAAAATACAACTCGGAAGCGACACTATGTGAGAATGACCATTTGAAACGAAAGGATTCTTCATGATAAAAAAGATATTTCAAAGTTTCTCACAGATCCTCAATCTGTACTTTTTATCCGAACATTTTGAGTAACCGCAAAACATGAAGTACATATAAAAATAAATAAAAGTGTTCAAAAATTCAAAAAAGTTCAAGAAATTGCAGTGTTTCATATCCGATGCAGATCGTTTCCATCGATAAAACACGTCATGCAAGTCGGGGAGAACATTGAACTTCGAGGAGATGTAATCTCGTGAATAGGACAACTACGGTAGCCGTCGTCGGCGAATTTTTTGAACTGATGTTTTTGCCGACCGTTGTGACTAGAACTATGGTTTCATTCACAGTCCGTTTTTGTTCCTGGAAGTAAACCTGAAAGTAAAATTAGCAATGGAAGTAAAATAATAAAAAAAACTGCATTCAAAAAGTATTTTTAAAAGGTTGGGATTTCGCCTACATGAGCTCCTTGGACAGTTTTAGAAGTGCCGCGATGCTATTGGCGGAGCTACGGTGTCGAAGCCACCTCTCGGATCTTCCAACGATGTGTATATGTAAGAAATTCGAAAAATACACGAAGAATTTGAATCCCGGATTAGGGTTTATAAGGTTTAGCAAGGGTGCGCATTTTGACAAGCCGCTTCAAATTTGAATAAAAATCGTTTTCACAGTCCCGGTCATGGATTTTTTCAAAAGTCTTAGTTGAAAGCAACCAATTTTGGGTGCTCGAAAAAGTATTACATTTCATTTTGGTCCGGTTTCACATTGTTGTGTTTTATCAAAGAAAAAATATGGCTTCAATTTGTAGTCGACATTTTTAATGTATGACGAATTCG</canonical>
            <polymorphic>AAGGGCGGCGAGTTCCTAGTCAAAATTCCTACTGTCACTATTTCCTGAAATTCTTGAAAACTGAGGCAACAGAGGACTGTTGGACGAATCAGGATCGAGGATTGCCGTGAAATTGAGAGTTATTCGAAAAAATACAACTCGGAAGCGACACTATGTGAGAATGACCATTTGAAACGAAAGGATTCTTCATGATAAAAAAGATATTTCAAAGTTTCTCACAGATCCTCAATCTGTACTTTTTATCCGAACATTTTGAGTAACCGCAAAACATGAAGTACATATAAAAATAAATAAAAGTGTTCAAAAATTCAAAAAAGTTCAAGAAATTGCAGTGTTTCATATCCGATGCAGATCGTTTCCATCGATAAAACACGTCATGCAAGTCGGGGAGAACATTGAACTTCGAGGAGATGTAATCTCGTGAATAGGACAACTACGGTAGCCGTCGTCGGCGAATTTTTTGAACTGATGTTTTTGCCGACCGTTGTGACTAGAACTAYGGTTTCATTCACAGTCCGTTTTTGTTCCTGGAAGTAAACCTGAAAGTAAAATTAGCAATGGAAGTAAAATAATAAAAAAAACTGCATTCAAAAAGTATTTTTAAAAGGTTGGGATTTCGCCTACATGAGCTCCTTGGACAGTTTTAGAAGTGCCGCGATGCTATTGGCGGAGCTACGGTGTCGAAGCCACCTCTCGGATCTTCCAACGATGTGTATATGTAAGAAATTCGAAAAATACACGAAGAATTTGAATCCCGGATTAGGGTTTATAAGGTTTAGCAAGGGTGCGCATTTTGACAAGCCGCTTCAAATTTGAATAAAAATCGTTTTCACAGTCCCGGTCATGGATTTTTTCAAAAGTCTTAGTTGAAAGCAACCAATTTTGGGTGCTCGAAAAAGTATTACATTTCATTTTGGTCCGGTTTCACATTGTTGTGTTTTATCAAAGAAAAAATATGGCTTCAATTTGTAGTCGACATTTTTAATGTATGACGAATTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAATTGCAGTGTTTCATATC</pcr_primer_p1>
		<pcr_primer_p2>TTTTACTTCCATTGCTAATTTTACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGAAATTGCAGTGTTTCATATCCGATGCAGATCGTTTCCATCGATAAAACACGTCATGCAAGTCGGGGAGAACATTGAACTTCGAGGAGATGTAATCTCGTGAATAGGACAACTACGGTAGCCGTCGTCGGCGAATTTTTTGAACTGATGTTTTTGCCGACCGTTGTGACTAGAACTATGGTTTCATTCACAGTCCGTTTTTGTTCCTGGAAGTAAACCTGAAAGTAAAATTAGCAATGGAAGTAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAGAAATTGCAGTGTTTCATATCCGATGCAGATCGTTTCCATCGATAAAACACGTCATGCAAGTCGGGGAGAACATTGAACTTCGAGGAGATGTAATCTCGTGAATAGGACAACTACGGTAGCCGTCGTCGGCGAATTTTTTGAACTGATGTTTTTGCCGACCGTTGTGACTAGAACTAYGGTTTCATTCACAGTCCGTTTTTGTTCCTGGAAGTAAACCTGAAAGTAAAATTAGCAATGGAAGTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26893</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>702300</contig_pos>
        <strand>+</strand>
        <context>AGTAAACCTG[A/G]AAGTAAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAACTATGGTTTCATTCACAGTCCGTTTTTGTTCCTGGAAGTAAACCTG</left_flank>
        <right_flank>AAGTAAAATTAGCAATGGAAGTAAAATAATAAAAAAAACTGCATTCAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGAAATTCTTGAAAACTGAGGCAACAGAGGACTGTTGGACGAATCAGGATCGAGGATTGCCGTGAAATTGAGAGTTATTCGAAAAAATACAACTCGGAAGCGACACTATGTGAGAATGACCATTTGAAACGAAAGGATTCTTCATGATAAAAAAGATATTTCAAAGTTTCTCACAGATCCTCAATCTGTACTTTTTATCCGAACATTTTGAGTAACCGCAAAACATGAAGTACATATAAAAATAAATAAAAGTGTTCAAAAATTCAAAAAAGTTCAAGAAATTGCAGTGTTTCATATCCGATGCAGATCGTTTCCATCGATAAAACACGTCATGCAAGTCGGGGAGAACATTGAACTTCGAGGAGATGTAATCTCGTGAATAGGACAACTACGGTAGCCGTCGTCGGCGAATTTTTTGAACTGATGTTTTTGCCGACCGTTGTGACTAGAACTATGGTTTCATTCACAGTCCGTTTTTGTTCCTGGAAGTAAACCTGAAAGTAAAATTAGCAATGGAAGTAAAATAATAAAAAAAACTGCATTCAAAAAGTATTTTTAAAAGGTTGGGATTTCGCCTACATGAGCTCCTTGGACAGTTTTAGAAGTGCCGCGATGCTATTGGCGGAGCTACGGTGTCGAAGCCACCTCTCGGATCTTCCAACGATGTGTATATGTAAGAAATTCGAAAAATACACGAAGAATTTGAATCCCGGATTAGGGTTTATAAGGTTTAGCAAGGGTGCGCATTTTGACAAGCCGCTTCAAATTTGAATAAAAATCGTTTTCACAGTCCCGGTCATGGATTTTTTCAAAAGTCTTAGTTGAAAGCAACCAATTTTGGGTGCTCGAAAAAGTATTACATTTCATTTTGGTCCGGTTTCACATTGTTGTGTTTTATCAAAGAAAAAATATGGCTTCAATTTGTAGTCGACATTTTTAATGTATGACGAATTCGTTAAAATGAGATATACCACTTGAAAACAACATATTCAGTCTTT</canonical>
            <polymorphic>CCTGAAATTCTTGAAAACTGAGGCAACAGAGGACTGTTGGACGAATCAGGATCGAGGATTGCCGTGAAATTGAGAGTTATTCGAAAAAATACAACTCGGAAGCGACACTATGTGAGAATGACCATTTGAAACGAAAGGATTCTTCATGATAAAAAAGATATTTCAAAGTTTCTCACAGATCCTCAATCTGTACTTTTTATCCGAACATTTTGAGTAACCGCAAAACATGAAGTACATATAAAAATAAATAAAAGTGTTCAAAAATTCAAAAAAGTTCAAGAAATTGCAGTGTTTCATATCCGATGCAGATCGTTTCCATCGATAAAACACGTCATGCAAGTCGGGGAGAACATTGAACTTCGAGGAGATGTAATCTCGTGAATAGGACAACTACGGTAGCCGTCGTCGGCGAATTTTTTGAACTGATGTTTTTGCCGACCGTTGTGACTAGAACTATGGTTTCATTCACAGTCCGTTTTTGTTCCTGGAAGTAAACCTGRAAGTAAAATTAGCAATGGAAGTAAAATAATAAAAAAAACTGCATTCAAAAAGTATTTTTAAAAGGTTGGGATTTCGCCTACATGAGCTCCTTGGACAGTTTTAGAAGTGCCGCGATGCTATTGGCGGAGCTACGGTGTCGAAGCCACCTCTCGGATCTTCCAACGATGTGTATATGTAAGAAATTCGAAAAATACACGAAGAATTTGAATCCCGGATTAGGGTTTATAAGGTTTAGCAAGGGTGCGCATTTTGACAAGCCGCTTCAAATTTGAATAAAAATCGTTTTCACAGTCCCGGTCATGGATTTTTTCAAAAGTCTTAGTTGAAAGCAACCAATTTTGGGTGCTCGAAAAAGTATTACATTTCATTTTGGTCCGGTTTCACATTGTTGTGTTTTATCAAAGAAAAAATATGGCTTCAATTTGTAGTCGACATTTTTAATGTATGACGAATTCGTTAAAATGAGATATACCACTTGAAAACAACATATTCAGTCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGATGTAATCTCGTGAATAGGA</pcr_primer_p1>
		<pcr_primer_p2>ACTTCTAAAACTGTCCAAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GAGATGTAATCTCGTGAATAGGACAACTACGGTAGCCGTCGTCGGCGAATTTTTTGAACTGATGTTTTTGCCGACCGTTGTGACTAGAACTATGGTTTCATTCACAGTCCGTTTTTGTTCCTGGAAGTAAACCTGAAAGTAAAATTAGCAATGGAAGTAAAATAATAAAAAAAACTGCATTCAAAAAGTATTTTTAAAAGGTTGGGATTTCGCCTACATGAGCTCCTTGGACAGTTTTAGAAGT</canonical_amplicon>
		<polymorphic_amplicon>GAGATGTAATCTCGTGAATAGGACAACTACGGTAGCCGTCGTCGGCGAATTTTTTGAACTGATGTTTTTGCCGACCGTTGTGACTAGAACTATGGTTTCATTCACAGTCCGTTTTTGTTCCTGGAAGTAAACCTGRAAGTAAAATTAGCAATGGAAGTAAAATAATAAAAAAAACTGCATTCAAAAAGTATTTTTAAAAGGTTGGGATTTCGCCTACATGAGCTCCTTGGACAGTTTTAGAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26894</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>702331</contig_pos>
        <strand>+</strand>
        <context>GTAAAATAAT[A/T]WAAAAAACTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTCCTGGAAGTAAACCTGAAAGTAAAATTAGCAATGGAAGTAAAATAAT</left_flank>
        <right_flank>AAAAAAACTGCATTCAAAAAGTATTTTTAAAAGGTTGGGATTTCGCCTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTGTTGGACGAATCAGGATCGAGGATTGCCGTGAAATTGAGAGTTATTCGAAAAAATACAACTCGGAAGCGACACTATGTGAGAATGACCATTTGAAACGAAAGGATTCTTCATGATAAAAAAGATATTTCAAAGTTTCTCACAGATCCTCAATCTGTACTTTTTATCCGAACATTTTGAGTAACCGCAAAACATGAAGTACATATAAAAATAAATAAAAGTGTTCAAAAATTCAAAAAAGTTCAAGAAATTGCAGTGTTTCATATCCGATGCAGATCGTTTCCATCGATAAAACACGTCATGCAAGTCGGGGAGAACATTGAACTTCGAGGAGATGTAATCTCGTGAATAGGACAACTACGGTAGCCGTCGTCGGCGAATTTTTTGAACTGATGTTTTTGCCGACCGTTGTGACTAGAACTATGGTTTCATTCACAGTCCGTTTTTGTTCCTGGAAGTAAACCTGAAAGTAAAATTAGCAATGGAAGTAAAATAATAAAAAAAACTGCATTCAAAAAGTATTTTTAAAAGGTTGGGATTTCGCCTACATGAGCTCCTTGGACAGTTTTAGAAGTGCCGCGATGCTATTGGCGGAGCTACGGTGTCGAAGCCACCTCTCGGATCTTCCAACGATGTGTATATGTAAGAAATTCGAAAAATACACGAAGAATTTGAATCCCGGATTAGGGTTTATAAGGTTTAGCAAGGGTGCGCATTTTGACAAGCCGCTTCAAATTTGAATAAAAATCGTTTTCACAGTCCCGGTCATGGATTTTTTCAAAAGTCTTAGTTGAAAGCAACCAATTTTGGGTGCTCGAAAAAGTATTACATTTCATTTTGGTCCGGTTTCACATTGTTGTGTTTTATCAAAGAAAAAATATGGCTTCAATTTGTAGTCGACATTTTTAATGTATGACGAATTCGTTAAAATGAGATATACCACTTGAAAACAACATATTCAGTCTTTTTTGGTTACATTCACTTTTTTACGAATGATC</canonical>
            <polymorphic>GACTGTTGGACGAATCAGGATCGAGGATTGCCGTGAAATTGAGAGTTATTCGAAAAAATACAACTCGGAAGCGACACTATGTGAGAATGACCATTTGAAACGAAAGGATTCTTCATGATAAAAAAGATATTTCAAAGTTTCTCACAGATCCTCAATCTGTACTTTTTATCCGAACATTTTGAGTAACCGCAAAACATGAAGTACATATAAAAATAAATAAAAGTGTTCAAAAATTCAAAAAAGTTCAAGAAATTGCAGTGTTTCATATCCGATGCAGATCGTTTCCATCGATAAAACACGTCATGCAAGTCGGGGAGAACATTGAACTTCGAGGAGATGTAATCTCGTGAATAGGACAACTACGGTAGCCGTCGTCGGCGAATTTTTTGAACTGATGTTTTTGCCGACCGTTGTGACTAGAACTATGGTTTCATTCACAGTCCGTTTTTGTTCCTGGAAGTAAACCTGAAAGTAAAATTAGCAATGGAAGTAAAATAATWAAAAAAACTGCATTCAAAAAGTATTTTTAAAAGGTTGGGATTTCGCCTACATGAGCTCCTTGGACAGTTTTAGAAGTGCCGCGATGCTATTGGCGGAGCTACGGTGTCGAAGCCACCTCTCGGATCTTCCAACGATGTGTATATGTAAGAAATTCGAAAAATACACGAAGAATTTGAATCCCGGATTAGGGTTTATAAGGTTTAGCAAGGGTGCGCATTTTGACAAGCCGCTTCAAATTTGAATAAAAATCGTTTTCACAGTCCCGGTCATGGATTTTTTCAAAAGTCTTAGTTGAAAGCAACCAATTTTGGGTGCTCGAAAAAGTATTACATTTCATTTTGGTCCGGTTTCACATTGTTGTGTTTTATCAAAGAAAAAATATGGCTTCAATTTGTAGTCGACATTTTTAATGTATGACGAATTCGTTAAAATGAGATATACCACTTGAAAACAACATATTCAGTCTTTTTTGGTTACATTCACTTTTTTACGAATGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGATGTAATCTCGTGAATAGGA</pcr_primer_p1>
		<pcr_primer_p2>ACTTCTAAAACTGTCCAAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GAGATGTAATCTCGTGAATAGGACAACTACGGTAGCCGTCGTCGGCGAATTTTTTGAACTGATGTTTTTGCCGACCGTTGTGACTAGAACTATGGTTTCATTCACAGTCCGTTTTTGTTCCTGGAAGTAAACCTGAAAGTAAAATTAGCAATGGAAGTAAAATAATAAAAAAAACTGCATTCAAAAAGTATTTTTAAAAGGTTGGGATTTCGCCTACATGAGCTCCTTGGACAGTTTTAGAAGT</canonical_amplicon>
		<polymorphic_amplicon>GAGATGTAATCTCGTGAATAGGACAACTACGGTAGCCGTCGTCGGCGAATTTTTTGAACTGATGTTTTTGCCGACCGTTGTGACTAGAACTATGGTTTCATTCACAGTCCGTTTTTGTTCCTGGAAGTAAACCTGAAAGTAAAATTAGCAATGGAAGTAAAATAATWAAAAAAACTGCATTCAAAAAGTATTTTTAAAAGGTTGGGATTTCGCCTACATGAGCTCCTTGGACAGTTTTAGAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26895</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>702332</contig_pos>
        <strand>+</strand>
        <context>TAAAATAATW[A/T]AAAAAACTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCCTGGAAGTAAACCTGAAAGTAAAATTAGCAATGGAAGTAAAATAATA</left_flank>
        <right_flank>AAAAAACTGCATTCAAAAAGTATTTTTAAAAGGTTGGGATTTCGCCTACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGTTGGACGAATCAGGATCGAGGATTGCCGTGAAATTGAGAGTTATTCGAAAAAATACAACTCGGAAGCGACACTATGTGAGAATGACCATTTGAAACGAAAGGATTCTTCATGATAAAAAAGATATTTCAAAGTTTCTCACAGATCCTCAATCTGTACTTTTTATCCGAACATTTTGAGTAACCGCAAAACATGAAGTACATATAAAAATAAATAAAAGTGTTCAAAAATTCAAAAAAGTTCAAGAAATTGCAGTGTTTCATATCCGATGCAGATCGTTTCCATCGATAAAACACGTCATGCAAGTCGGGGAGAACATTGAACTTCGAGGAGATGTAATCTCGTGAATAGGACAACTACGGTAGCCGTCGTCGGCGAATTTTTTGAACTGATGTTTTTGCCGACCGTTGTGACTAGAACTATGGTTTCATTCACAGTCCGTTTTTGTTCCTGGAAGTAAACCTGAAAGTAAAATTAGCAATGGAAGTAAAATAATAAAAAAAACTGCATTCAAAAAGTATTTTTAAAAGGTTGGGATTTCGCCTACATGAGCTCCTTGGACAGTTTTAGAAGTGCCGCGATGCTATTGGCGGAGCTACGGTGTCGAAGCCACCTCTCGGATCTTCCAACGATGTGTATATGTAAGAAATTCGAAAAATACACGAAGAATTTGAATCCCGGATTAGGGTTTATAAGGTTTAGCAAGGGTGCGCATTTTGACAAGCCGCTTCAAATTTGAATAAAAATCGTTTTCACAGTCCCGGTCATGGATTTTTTCAAAAGTCTTAGTTGAAAGCAACCAATTTTGGGTGCTCGAAAAAGTATTACATTTCATTTTGGTCCGGTTTCACATTGTTGTGTTTTATCAAAGAAAAAATATGGCTTCAATTTGTAGTCGACATTTTTAATGTATGACGAATTCGTTAAAATGAGATATACCACTTGAAAACAACATATTCAGTCTTTTTTGGTTACATTCACTTTTTTACGAATGATCT</canonical>
            <polymorphic>ACTGTTGGACGAATCAGGATCGAGGATTGCCGTGAAATTGAGAGTTATTCGAAAAAATACAACTCGGAAGCGACACTATGTGAGAATGACCATTTGAAACGAAAGGATTCTTCATGATAAAAAAGATATTTCAAAGTTTCTCACAGATCCTCAATCTGTACTTTTTATCCGAACATTTTGAGTAACCGCAAAACATGAAGTACATATAAAAATAAATAAAAGTGTTCAAAAATTCAAAAAAGTTCAAGAAATTGCAGTGTTTCATATCCGATGCAGATCGTTTCCATCGATAAAACACGTCATGCAAGTCGGGGAGAACATTGAACTTCGAGGAGATGTAATCTCGTGAATAGGACAACTACGGTAGCCGTCGTCGGCGAATTTTTTGAACTGATGTTTTTGCCGACCGTTGTGACTAGAACTATGGTTTCATTCACAGTCCGTTTTTGTTCCTGGAAGTAAACCTGAAAGTAAAATTAGCAATGGAAGTAAAATAATAWAAAAAACTGCATTCAAAAAGTATTTTTAAAAGGTTGGGATTTCGCCTACATGAGCTCCTTGGACAGTTTTAGAAGTGCCGCGATGCTATTGGCGGAGCTACGGTGTCGAAGCCACCTCTCGGATCTTCCAACGATGTGTATATGTAAGAAATTCGAAAAATACACGAAGAATTTGAATCCCGGATTAGGGTTTATAAGGTTTAGCAAGGGTGCGCATTTTGACAAGCCGCTTCAAATTTGAATAAAAATCGTTTTCACAGTCCCGGTCATGGATTTTTTCAAAAGTCTTAGTTGAAAGCAACCAATTTTGGGTGCTCGAAAAAGTATTACATTTCATTTTGGTCCGGTTTCACATTGTTGTGTTTTATCAAAGAAAAAATATGGCTTCAATTTGTAGTCGACATTTTTAATGTATGACGAATTCGTTAAAATGAGATATACCACTTGAAAACAACATATTCAGTCTTTTTTGGTTACATTCACTTTTTTACGAATGATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGATGTAATCTCGTGAATAGGA</pcr_primer_p1>
		<pcr_primer_p2>ACTTCTAAAACTGTCCAAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GAGATGTAATCTCGTGAATAGGACAACTACGGTAGCCGTCGTCGGCGAATTTTTTGAACTGATGTTTTTGCCGACCGTTGTGACTAGAACTATGGTTTCATTCACAGTCCGTTTTTGTTCCTGGAAGTAAACCTGAAAGTAAAATTAGCAATGGAAGTAAAATAATAAAAAAAACTGCATTCAAAAAGTATTTTTAAAAGGTTGGGATTTCGCCTACATGAGCTCCTTGGACAGTTTTAGAAGT</canonical_amplicon>
		<polymorphic_amplicon>GAGATGTAATCTCGTGAATAGGACAACTACGGTAGCCGTCGTCGGCGAATTTTTTGAACTGATGTTTTTGCCGACCGTTGTGACTAGAACTATGGTTTCATTCACAGTCCGTTTTTGTTCCTGGAAGTAAACCTGAAAGTAAAATTAGCAATGGAAGTAAAATAATAWAAAAAACTGCATTCAAAAAGTATTTTTAAAAGGTTGGGATTTCGCCTACATGAGCTCCTTGGACAGTTTTAGAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26896</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>702354</contig_pos>
        <strand>+</strand>
        <context>TTCAAAAAGT[A/G]TTTTTAAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAAATTAGCAATGGAAGTAAAATAATAAAAAAAACTGCATTCAAAAAGT</left_flank>
        <right_flank>TTTTTAAAAGGTTGGGATTTCGCCTACATGAGCTCCTTGGACAGTTTTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGATTGCCGTGAAATTGAGAGTTATTCGAAAAAATACAACTCGGAAGCGACACTATGTGAGAATGACCATTTGAAACGAAAGGATTCTTCATGATAAAAAAGATATTTCAAAGTTTCTCACAGATCCTCAATCTGTACTTTTTATCCGAACATTTTGAGTAACCGCAAAACATGAAGTACATATAAAAATAAATAAAAGTGTTCAAAAATTCAAAAAAGTTCAAGAAATTGCAGTGTTTCATATCCGATGCAGATCGTTTCCATCGATAAAACACGTCATGCAAGTCGGGGAGAACATTGAACTTCGAGGAGATGTAATCTCGTGAATAGGACAACTACGGTAGCCGTCGTCGGCGAATTTTTTGAACTGATGTTTTTGCCGACCGTTGTGACTAGAACTATGGTTTCATTCACAGTCCGTTTTTGTTCCTGGAAGTAAACCTGAAAGTAAAATTAGCAATGGAAGTAAAATAATAAAAAAAACTGCATTCAAAAAGTATTTTTAAAAGGTTGGGATTTCGCCTACATGAGCTCCTTGGACAGTTTTAGAAGTGCCGCGATGCTATTGGCGGAGCTACGGTGTCGAAGCCACCTCTCGGATCTTCCAACGATGTGTATATGTAAGAAATTCGAAAAATACACGAAGAATTTGAATCCCGGATTAGGGTTTATAAGGTTTAGCAAGGGTGCGCATTTTGACAAGCCGCTTCAAATTTGAATAAAAATCGTTTTCACAGTCCCGGTCATGGATTTTTTCAAAAGTCTTAGTTGAAAGCAACCAATTTTGGGTGCTCGAAAAAGTATTACATTTCATTTTGGTCCGGTTTCACATTGTTGTGTTTTATCAAAGAAAAAATATGGCTTCAATTTGTAGTCGACATTTTTAATGTATGACGAATTCGTTAAAATGAGATATACCACTTGAAAACAACATATTCAGTCTTTTTTGGTTACATTCACTTTTTTACGAATGATCTTCTTTGCTGGATTCAGATAAAC</canonical>
            <polymorphic>AGGATTGCCGTGAAATTGAGAGTTATTCGAAAAAATACAACTCGGAAGCGACACTATGTGAGAATGACCATTTGAAACGAAAGGATTCTTCATGATAAAAAAGATATTTCAAAGTTTCTCACAGATCCTCAATCTGTACTTTTTATCCGAACATTTTGAGTAACCGCAAAACATGAAGTACATATAAAAATAAATAAAAGTGTTCAAAAATTCAAAAAAGTTCAAGAAATTGCAGTGTTTCATATCCGATGCAGATCGTTTCCATCGATAAAACACGTCATGCAAGTCGGGGAGAACATTGAACTTCGAGGAGATGTAATCTCGTGAATAGGACAACTACGGTAGCCGTCGTCGGCGAATTTTTTGAACTGATGTTTTTGCCGACCGTTGTGACTAGAACTATGGTTTCATTCACAGTCCGTTTTTGTTCCTGGAAGTAAACCTGAAAGTAAAATTAGCAATGGAAGTAAAATAATAAAAAAAACTGCATTCAAAAAGTRTTTTTAAAAGGTTGGGATTTCGCCTACATGAGCTCCTTGGACAGTTTTAGAAGTGCCGCGATGCTATTGGCGGAGCTACGGTGTCGAAGCCACCTCTCGGATCTTCCAACGATGTGTATATGTAAGAAATTCGAAAAATACACGAAGAATTTGAATCCCGGATTAGGGTTTATAAGGTTTAGCAAGGGTGCGCATTTTGACAAGCCGCTTCAAATTTGAATAAAAATCGTTTTCACAGTCCCGGTCATGGATTTTTTCAAAAGTCTTAGTTGAAAGCAACCAATTTTGGGTGCTCGAAAAAGTATTACATTTCATTTTGGTCCGGTTTCACATTGTTGTGTTTTATCAAAGAAAAAATATGGCTTCAATTTGTAGTCGACATTTTTAATGTATGACGAATTCGTTAAAATGAGATATACCACTTGAAAACAACATATTCAGTCTTTTTTGGTTACATTCACTTTTTTACGAATGATCTTCTTTGCTGGATTCAGATAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGATGTAATCTCGTGAATAGGA</pcr_primer_p1>
		<pcr_primer_p2>ACTTCTAAAACTGTCCAAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GAGATGTAATCTCGTGAATAGGACAACTACGGTAGCCGTCGTCGGCGAATTTTTTGAACTGATGTTTTTGCCGACCGTTGTGACTAGAACTATGGTTTCATTCACAGTCCGTTTTTGTTCCTGGAAGTAAACCTGAAAGTAAAATTAGCAATGGAAGTAAAATAATAAAAAAAACTGCATTCAAAAAGTATTTTTAAAAGGTTGGGATTTCGCCTACATGAGCTCCTTGGACAGTTTTAGAAGT</canonical_amplicon>
		<polymorphic_amplicon>GAGATGTAATCTCGTGAATAGGACAACTACGGTAGCCGTCGTCGGCGAATTTTTTGAACTGATGTTTTTGCCGACCGTTGTGACTAGAACTATGGTTTCATTCACAGTCCGTTTTTGTTCCTGGAAGTAAACCTGAAAGTAAAATTAGCAATGGAAGTAAAATAATAAAAAAAACTGCATTCAAAAAGTRTTTTTAAAAGGTTGGGATTTCGCCTACATGAGCTCCTTGGACAGTTTTAGAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26897</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>751870</contig_pos>
        <strand></strand>
        <context>TCATGCATGG[C/T]TCTTCGACCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTTCTTGTTCACCACACCGCACGTTTACAATTCGAAGCATCATGCATGG</left_flank>
        <right_flank>TCTTCGACCCCATGATTTTCCCAGATATGGCTAAAGAGTACGATAATTTG</right_flank>
        <qual_score>35</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTGGCGAGCGTCAACCAATCACTGGAACACTGCAAATTGCATATGGAATCGTTGTTAATGTTAGTTTCTCTATTCAACTGTCCATTTTCTTTAAACTTTAGCTTCTCTACATCCCAATCACCCTGATCATGCTCGACAAAGAGCATTTCAAACTGTCCTGCTTCAAAATCATGTTCCAACTTGCCATCACCGACTTTTTTGTCATTTGTATCAATTCGATTGTTACTGGAATCTTAGCTATCCTGGGAGCAGTATACTGTACCTATCCGACACTCATCTACCTTACTGGTCTGGTGGCAATGTCGTTGTGGTGCTCTTCATGTTTCACCTCGTTGATCCTGGTTTGCAATCGGATCTTGGTGATATCGAAACCACATCTGGAGATGGTCATTTTTGAGGGCAATAAAACATATATAGTGCTGAGCTTCTCTTTGATTTACGCTCTATACTTCTTGTTCACCACACCGCACGTTTACAATTCGAAGCATCATGCATGGCTCTTCGACCCCATGATTTTCCCAGATATGGCTAAAGAGTACGATAATTTGGCTCATACAATCAACAACTTTTCTATCGTGATCCTCACCTCTATATTGTATATTCCCTTTTACTATATAGTCAGAAACAATCTAAACGCAGCTGGCACTCAGTCAAGGATGCAAAATGCCGTAAGCTTCGACAAACAAGTATTTTATTATTTCAGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATACTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAATCTAGTTAACGTGTCTCCTGGAGTCATAATTTTCGGACATGTGCTCTGGCAATTCGTGCATGGAGCACCTGTTTTTATTTATATCGCTTTGAATGATATGATAAGAAAACGGTTTTTTGCAATGATAAAAGTCCAGAAAAAAAGTAATTCAACTGTGGTGGCTTTATCAATAATCAATCATTCGGCGCTTGTGCAACACTAAGTGTCA</canonical>
            <polymorphic>AACTGGCGAGCGTCAACCAATCACTGGAACACTGCAAATTGCATATGGAATCGTTGTTAATGTTAGTTTCTCTATTCAACTGTCCATTTTCTTTAAACTTTAGCTTCTCTACATCCCAATCACCCTGATCATGCTCGACAAAGAGCATTTCAAACTGTCCTGCTTCAAAATCATGTTCCAACTTGCCATCACCGACTTTTTTGTCATTTGTATCAATTCGATTGTTACTGGAATCTTAGCTATCCTGGGAGCAGTATACTGTACCTATCCGACACTCATCTACCTTACTGGTCTGGTGGCAATGTCGTTGTGGTGCTCTTCATGTTTCACCTCGTTGATCCTGGTTTGCAATCGGATCTTGGTGATATCGAAACCACATCTGGAGATGGTCATTTTTGAGGGCAATAAAACATATATAGTGCTGAGCTTCTCTTTGATTTACGCTCTATACTTCTTGTTCACCACACCGCACGTTTACAATTCGAAGCATCATGCATGGYTCTTCGACCCCATGATTTTCCCAGATATGGCTAAAGAGTACGATAATTTGGCTCATACAATCAACAACTTTTCTATCGTGATCCTCACCTCTATATTGTATATTCCCTTTTACTATATAGTCAGAAACAATCTAAACGCAGCTGGCACTCAGTCAAGGATGCAAAATGCCGTAAGCTTCGACAAACAAGTATTTTATTATTTCAGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATACTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAATCTAGTTAACGTGTCTCCTGGAGTCATAATTTTCGGACATGTGCTCTGGCAATTCGTGCATGGAGCACCTGTTTTTATTTATATCGCTTTGAATGATATGATAAGAAAACGGTTTTTTGCAATGATAAAAGTCCAGAAAAAAAGTAATTCAACTGTGGTGGCTTTATCAATAATCAATCATTCGGCGCTTGTGCAACACTAAGTGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>194 187 136 103 90 80 73 47 34 31 21 4</canonical_bands>
                <polymorphic_bands>194 187 136 104 103 90 80 47 34 21 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGCTCTTCATGTTTCACCT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTATGAGCCAAATTATCGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTGCTCTTCATGTTTCACCTCGTTGATCCTGGTTTGCAATCGGATCTTGGTGATATCGAAACCACATCTGGAGATGGTCATTTTTGAGGGCAATAAAACATATATAGTGCTGAGCTTCTCTTTGATTTACGCTCTATACTTCTTGTTCACCACACCGCACGTTTACAATTCGAAGCATCATGCATGGCTCTTCGACCCCATGATTTTCCCAGATATGGCTAAAGAGTACGATAATTTGGCTCATACAAT</canonical_amplicon>
		<polymorphic_amplicon>GTGCTCTTCATGTTTCACCTCGTTGATCCTGGTTTGCAATCGGATCTTGGTGATATCGAAACCACATCTGGAGATGGTCATTTTTGAGGGCAATAAAACATATATAGTGCTGAGCTTCTCTTTGATTTACGCTCTATACTTCTTGTTCACCACACCGCACGTTTACAATTCGAAGCATCATGCATGGYTCTTCGACCCCATGATTTTCCCAGATATGGCTAAAGAGTACGATAATTTGGCTCATACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26898</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>752263</contig_pos>
        <strand></strand>
        <context>GAATGATATG[A/T]TAAGAAAACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTCGTGCATGGAGCACCTGTTTTTATTTATATCGCTTTGAATGATATG</left_flank>
        <right_flank>TAAGAAAACGGTTTTTTGCAATGATAAAAGTCCAGAAAAAAAGTAATTCA</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGAGGGCAATAAAACATATATAGTGCTGAGCTTCTCTTTGATTTACGCTCTATACTTCTTGTTCACCACACCGCACGTTTACAATTCGAAGCATCATGCATGGCTCTTCGACCCCATGATTTTCCCAGATATGGCTAAAGAGTACGATAATTTGGCTCATACAATCAACAACTTTTCTATCGTGATCCTCACCTCTATATTGTATATTCCCTTTTACTATATAGTCAGAAACAATCTAAACGCAGCTGGCACTCAGTCAAGGATGCAAAATGCCGTAAGCTTCGACAAACAAGTATTTTATTATTTCAGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATACTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAATCTAGTTAACGTGTCTCCTGGAGTCATAATTTTCGGACATGTGCTCTGGCAATTCGTGCATGGAGCACCTGTTTTTATTTATATCGCTTTGAATGATATGATAAGAAAACGGTTTTTTGCAATGATAAAAGTCCAGAAAAAAAGTAATTCAACTGTGGTGGCTTTATCAATAATCAATCATTCGGCGCTTGTGCAACACTAAGTGTCAGTATTCGAATCAACAAGTCCGGTTCCTGGGTCGAAAGTGACTTTTTTGCATTTCAAATGAGTTTTATCGAATAAAGTGTTATTTCCTAGTCTCTGAATTTCCTATAAACAAGATAATTTTCAGCTAAGTCTGTTTAGAAATGAGCTTAACAGAGGAAATGCAATGATCTGACGTAATGAACCTTTACAGTTTCGATTTATACATCGAAATAGCGTAGTCTTCCTAGTAGCCAATGGTGTTCCTTGTGGCATCTGACATTTTAGCCTGTGGGTGTGGACAAGTCTTGGCCAGGTTTTGGTCCAAAGTTTTTCAAAAACGGTTGTACGGCGGACTGTGACTCAAAAACAGCTCTACAGCTGACATTAGCTAAAATTTGATAGGAAGCTCAAACTT</canonical>
            <polymorphic>TTTTGAGGGCAATAAAACATATATAGTGCTGAGCTTCTCTTTGATTTACGCTCTATACTTCTTGTTCACCACACCGCACGTTTACAATTCGAAGCATCATGCATGGCTCTTCGACCCCATGATTTTCCCAGATATGGCTAAAGAGTACGATAATTTGGCTCATACAATCAACAACTTTTCTATCGTGATCCTCACCTCTATATTGTATATTCCCTTTTACTATATAGTCAGAAACAATCTAAACGCAGCTGGCACTCAGTCAAGGATGCAAAATGCCGTAAGCTTCGACAAACAAGTATTTTATTATTTCAGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATACTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAATCTAGTTAACGTGTCTCCTGGAGTCATAATTTTCGGACATGTGCTCTGGCAATTCGTGCATGGAGCACCTGTTTTTATTTATATCGCTTTGAATGATATGWTAAGAAAACGGTTTTTTGCAATGATAAAAGTCCAGAAAAAAAGTAATTCAACTGTGGTGGCTTTATCAATAATCAATCATTCGGCGCTTGTGCAACACTAAGTGTCAGTATTCGAATCAACAAGTCCGGTTCCTGGGTCGAAAGTGACTTTTTTGCATTTCAAATGAGTTTTATCGAATAAAGTGTTATTTCCTAGTCTCTGAATTTCCTATAAACAAGATAATTTTCAGCTAAGTCTGTTTAGAAATGAGCTTAACAGAGGAAATGCAATGATCTGACGTAATGAACCTTTACAGTTTCGATTTATACATCGAAATAGCGTAGTCTTCCTAGTAGCCAATGGTGTTCCTTGTGGCATCTGACATTTTAGCCTGTGGGTGTGGACAAGTCTTGGCCAGGTTTTGGTCCAAAGTTTTTCAAAAACGGTTGTACGGCGGACTGTGACTCAAAAACAGCTCTACAGCTGACATTAGCTAAAATTTGATAGGAAGCTCAAACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAATCTTTCAGAAAATCCAAGT</pcr_primer_p1>
		<pcr_primer_p2>CCACCACAGTTGAATTACTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATACTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAATCTAGTTAACGTGTCTCCTGGAGTCATAATTTTCGGACATGTGCTCTGGCAATTCGTGCATGGAGCACCTGTTTTTATTTATATCGCTTTGAATGATATGATAAGAAAACGGTTTTTTGCAATGATAAAAGTCCAGAAAAAAAGTAATTCAACTGTGGTGG</canonical_amplicon>
		<polymorphic_amplicon>AGAATCTTTCAGAAAATCCAAGTGTTCATTCAATCGATACTAATTTGTGCGGCCAGCCAAGGTGCCGCTGTGATTTACGTTTTCATGAATCTAGTTAACGTGTCTCCTGGAGTCATAATTTTCGGACATGTGCTCTGGCAATTCGTGCATGGAGCACCTGTTTTTATTTATATCGCTTTGAATGATATGWTAAGAAAACGGTTTTTTGCAATGATAAAAGTCCAGAAAAAAAGTAATTCAACTGTGGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26899</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>777645</contig_pos>
        <strand></strand>
        <context>TTAGGCATAT[T/C]ATTGCGATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTCTCCTCTTTCAAATCATCCTACAAAATGTAGACAACAATTAGGCATAT</left_flank>
        <right_flank>ATTGCGATTCAAAACCATATGTTTCAAAATAGCACATTTAGACACTTCTA</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACATTTTGTACCTACAATACTAGTTAACAACACACAACTGACGGTCAACAACGTCACCAAATACACACCCACAGAGCTCTTGTGATTTTGGCAAAGTTTTAGATATCATAAGTGATATCGGGACAAAAAGGACGAGAAGGAGATCCTTCATTTTCCCGTTTTGCAAATTTACTGTTTTCCTGATTTTCATATTATAACAATAGGATGGTTCCAATTAAAGCATATTCTTTCTTGATTGTTTTGTGTTCTGGGTTTATCAAAGCTAACAAAATAGGTTCTTTGAAAAAAACGTCTACTGCAGATTTCTCAAAATATGATTTTCTCATCATTTCATCCATACAATCTAGTCGAGAAGTTGAACTTTTGGGCCCAGTGATGGAAGTAAACTGGTTACGTTACGTCTAGACGAATACCGTAAATTCAAAAAAAAAATCAAGAAAACCCTGTCTCTCCTCTTTCAAATCATCCTACAAAATGTAGACAACAATTAGGCATATTATTGCGATTCAAAACCATATGTTTCAAAATAGCACATTTAGACACTTCTATGCAGCTGAAAATGCCCATTGTCTAAAGACTAAACCAGAATTCTAAATTCGGATTACTTTCGGTCAGACATTTTCCAACTGGGTGATAATTTTGAAATGGATCAATAACCCATCTTGTTCTTTGGTCGAAAAACTATGGGTATAAACCTTTGAGTTATTTTTAATAGTATTATCATTTCCTTAACATCCTTCATACCCAATAACAAGACTTCCTTGTCTGCTCGAATACAAATTAAGTCTACAGAGAAATAGGAACAGAATCGCCTAGTATTTCCCTATGGATCTAATTAACTCATTCAATAACGTTCGTTATCTCATGATTTTCTGAACAAAAATGTTTGAGTCTAGTTTTGAGGCTCTTACATTAATCCCACCCTCTTAGTTAGTCATAAGAAATCTATTGAGGATTGATTACCATGTAACATTTCTTTTAGGTTTTTTGTTAGCTAA</canonical>
            <polymorphic>CGACATTTTGTACCTACAATACTAGTTAACAACACACAACTGACGGTCAACAACGTCACCAAATACACACCCACAGAGCTCTTGTGATTTTGGCAAAGTTTTAGATATCATAAGTGATATCGGGACAAAAAGGACGAGAAGGAGATCCTTCATTTTCCCGTTTTGCAAATTTACTGTTTTCCTGATTTTCATATTATAACAATAGGATGGTTCCAATTAAAGCATATTCTTTCTTGATTGTTTTGTGTTCTGGGTTTATCAAAGCTAACAAAATAGGTTCTTTGAAAAAAACGTCTACTGCAGATTTCTCAAAATATGATTTTCTCATCATTTCATCCATACAATCTAGTCGAGAAGTTGAACTTTTGGGCCCAGTGATGGAAGTAAACTGGTTACGTTACGTCTAGACGAATACCGTAAATTCAAAAAAAAAATCAAGAAAACCCTGTCTCTCCTCTTTCAAATCATCCTACAAAATGTAGACAACAATTAGGCATATYATTGCGATTCAAAACCATATGTTTCAAAATAGCACATTTAGACACTTCTATGCAGCTGAAAATGCCCATTGTCTAAAGACTAAACCAGAATTCTAAATTCGGATTACTTTCGGTCAGACATTTTCCAACTGGGTGATAATTTTGAAATGGATCAATAACCCATCTTGTTCTTTGGTCGAAAAACTATGGGTATAAACCTTTGAGTTATTTTTAATAGTATTATCATTTCCTTAACATCCTTCATACCCAATAACAAGACTTCCTTGTCTGCTCGAATACAAATTAAGTCTACAGAGAAATAGGAACAGAATCGCCTAGTATTTCCCTATGGATCTAATTAACTCATTCAATAACGTTCGTTATCTCATGATTTTCTGAACAAAAATGTTTGAGTCTAGTTTTGAGGCTCTTACATTAATCCCACCCTCTTAGTTAGTCATAAGAAATCTATTGAGGATTGATTACCATGTAACATTTCTTTTAGGTTTTTTGTTAGCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGACGAATACCGTAAATTCAA</pcr_primer_p1>
		<pcr_primer_p2>GATCCATTTCAAAATTATCACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAGACGAATACCGTAAATTCAAAAAAAAAATCAAGAAAACCCTGTCTCTCCTCTTTCAAATCATCCTACAAAATGTAGACAACAATTAGGCATATTATTGCGATTCAAAACCATATGTTTCAAAATAGCACATTTAGACACTTCTATGCAGCTGAAAATGCCCATTGTCTAAAGACTAAACCAGAATTCTAAATTCGGATTACTTTCGGTCAGACATTTTCCAACTGGGTGATAATTTTGAAATGGATC</canonical_amplicon>
		<polymorphic_amplicon>CTAGACGAATACCGTAAATTCAAAAAAAAAATCAAGAAAACCCTGTCTCTCCTCTTTCAAATCATCCTACAAAATGTAGACAACAATTAGGCATATYATTGCGATTCAAAACCATATGTTTCAAAATAGCACATTTAGACACTTCTATGCAGCTGAAAATGCCCATTGTCTAAAGACTAAACCAGAATTCTAAATTCGGATTACTTTCGGTCAGACATTTTCCAACTGGGTGATAATTTTGAAATGGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26900</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>777664</contig_pos>
        <strand></strand>
        <context>TCAAAACCAT[A/C]TGTTTCAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCTACAAAATGTAGACAACAATTAGGCATATTATTGCGATTCAAAACCAT</left_flank>
        <right_flank>TGTTTCAAAATAGCACATTTAGACACTTCTATGCAGCTGAAAATGCCCAT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTAGTTAACAACACACAACTGACGGTCAACAACGTCACCAAATACACACCCACAGAGCTCTTGTGATTTTGGCAAAGTTTTAGATATCATAAGTGATATCGGGACAAAAAGGACGAGAAGGAGATCCTTCATTTTCCCGTTTTGCAAATTTACTGTTTTCCTGATTTTCATATTATAACAATAGGATGGTTCCAATTAAAGCATATTCTTTCTTGATTGTTTTGTGTTCTGGGTTTATCAAAGCTAACAAAATAGGTTCTTTGAAAAAAACGTCTACTGCAGATTTCTCAAAATATGATTTTCTCATCATTTCATCCATACAATCTAGTCGAGAAGTTGAACTTTTGGGCCCAGTGATGGAAGTAAACTGGTTACGTTACGTCTAGACGAATACCGTAAATTCAAAAAAAAAATCAAGAAAACCCTGTCTCTCCTCTTTCAAATCATCCTACAAAATGTAGACAACAATTAGGCATATTATTGCGATTCAAAACCATATGTTTCAAAATAGCACATTTAGACACTTCTATGCAGCTGAAAATGCCCATTGTCTAAAGACTAAACCAGAATTCTAAATTCGGATTACTTTCGGTCAGACATTTTCCAACTGGGTGATAATTTTGAAATGGATCAATAACCCATCTTGTTCTTTGGTCGAAAAACTATGGGTATAAACCTTTGAGTTATTTTTAATAGTATTATCATTTCCTTAACATCCTTCATACCCAATAACAAGACTTCCTTGTCTGCTCGAATACAAATTAAGTCTACAGAGAAATAGGAACAGAATCGCCTAGTATTTCCCTATGGATCTAATTAACTCATTCAATAACGTTCGTTATCTCATGATTTTCTGAACAAAAATGTTTGAGTCTAGTTTTGAGGCTCTTACATTAATCCCACCCTCTTAGTTAGTCATAAGAAATCTATTGAGGATTGATTACCATGTAACATTTCTTTTAGGTTTTTTGTTAGCTAATACTTAATCTTCAGCTCTT</canonical>
            <polymorphic>TACTAGTTAACAACACACAACTGACGGTCAACAACGTCACCAAATACACACCCACAGAGCTCTTGTGATTTTGGCAAAGTTTTAGATATCATAAGTGATATCGGGACAAAAAGGACGAGAAGGAGATCCTTCATTTTCCCGTTTTGCAAATTTACTGTTTTCCTGATTTTCATATTATAACAATAGGATGGTTCCAATTAAAGCATATTCTTTCTTGATTGTTTTGTGTTCTGGGTTTATCAAAGCTAACAAAATAGGTTCTTTGAAAAAAACGTCTACTGCAGATTTCTCAAAATATGATTTTCTCATCATTTCATCCATACAATCTAGTCGAGAAGTTGAACTTTTGGGCCCAGTGATGGAAGTAAACTGGTTACGTTACGTCTAGACGAATACCGTAAATTCAAAAAAAAAATCAAGAAAACCCTGTCTCTCCTCTTTCAAATCATCCTACAAAATGTAGACAACAATTAGGCATATTATTGCGATTCAAAACCATMTGTTTCAAAATAGCACATTTAGACACTTCTATGCAGCTGAAAATGCCCATTGTCTAAAGACTAAACCAGAATTCTAAATTCGGATTACTTTCGGTCAGACATTTTCCAACTGGGTGATAATTTTGAAATGGATCAATAACCCATCTTGTTCTTTGGTCGAAAAACTATGGGTATAAACCTTTGAGTTATTTTTAATAGTATTATCATTTCCTTAACATCCTTCATACCCAATAACAAGACTTCCTTGTCTGCTCGAATACAAATTAAGTCTACAGAGAAATAGGAACAGAATCGCCTAGTATTTCCCTATGGATCTAATTAACTCATTCAATAACGTTCGTTATCTCATGATTTTCTGAACAAAAATGTTTGAGTCTAGTTTTGAGGCTCTTACATTAATCCCACCCTCTTAGTTAGTCATAAGAAATCTATTGAGGATTGATTACCATGTAACATTTCTTTTAGGTTTTTTGTTAGCTAATACTTAATCTTCAGCTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATATG</site>
                <isoschizomers>
                    <enzyme>FauNDI</enzyme>
                    <enzyme>NdeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGACGAATACCGTAAATTCAA</pcr_primer_p1>
		<pcr_primer_p2>GATCCATTTCAAAATTATCACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAGACGAATACCGTAAATTCAAAAAAAAAATCAAGAAAACCCTGTCTCTCCTCTTTCAAATCATCCTACAAAATGTAGACAACAATTAGGCATATTATTGCGATTCAAAACCATATGTTTCAAAATAGCACATTTAGACACTTCTATGCAGCTGAAAATGCCCATTGTCTAAAGACTAAACCAGAATTCTAAATTCGGATTACTTTCGGTCAGACATTTTCCAACTGGGTGATAATTTTGAAATGGATC</canonical_amplicon>
		<polymorphic_amplicon>CTAGACGAATACCGTAAATTCAAAAAAAAAATCAAGAAAACCCTGTCTCTCCTCTTTCAAATCATCCTACAAAATGTAGACAACAATTAGGCATATTATTGCGATTCAAAACCATMTGTTTCAAAATAGCACATTTAGACACTTCTATGCAGCTGAAAATGCCCATTGTCTAAAGACTAAACCAGAATTCTAAATTCGGATTACTTTCGGTCAGACATTTTCCAACTGGGTGATAATTTTGAAATGGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26901</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>777866</contig_pos>
        <strand></strand>
        <context>TTAATAGTAT[T/C]ATCATTTCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTGGTCGAAAAACTATGGGTATAAACCTTTGAGTTATTTTTAATAGTAT</left_flank>
        <right_flank>ATCATTTCCTTAACATCCTTCATACCCAATAACAAGACTTCCTTGTCTGC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATATTCTTTCTTGATTGTTTTGTGTTCTGGGTTTATCAAAGCTAACAAAATAGGTTCTTTGAAAAAAACGTCTACTGCAGATTTCTCAAAATATGATTTTCTCATCATTTCATCCATACAATCTAGTCGAGAAGTTGAACTTTTGGGCCCAGTGATGGAAGTAAACTGGTTACGTTACGTCTAGACGAATACCGTAAATTCAAAAAAAAAATCAAGAAAACCCTGTCTCTCCTCTTTCAAATCATCCTACAAAATGTAGACAACAATTAGGCATATTATTGCGATTCAAAACCATATGTTTCAAAATAGCACATTTAGACACTTCTATGCAGCTGAAAATGCCCATTGTCTAAAGACTAAACCAGAATTCTAAATTCGGATTACTTTCGGTCAGACATTTTCCAACTGGGTGATAATTTTGAAATGGATCAATAACCCATCTTGTTCTTTGGTCGAAAAACTATGGGTATAAACCTTTGAGTTATTTTTAATAGTATTATCATTTCCTTAACATCCTTCATACCCAATAACAAGACTTCCTTGTCTGCTCGAATACAAATTAAGTCTACAGAGAAATAGGAACAGAATCGCCTAGTATTTCCCTATGGATCTAATTAACTCATTCAATAACGTTCGTTATCTCATGATTTTCTGAACAAAAATGTTTGAGTCTAGTTTTGAGGCTCTTACATTAATCCCACCCTCTTAGTTAGTCATAAGAAATCTATTGAGGATTGATTACCATGTAACATTTCTTTTAGGTTTTTTGTTAGCTAATACTTAATCTTCAGCTCTTATGAGAATGATAAGATTAGGGTCAATTTTTTATTGATCTGAAAATGCTCTCTATGAATTTTTAGATATAAGAAGCTGATTTTCCTGCTCTATGAATCTTTGACACACGACGTTTTGCACCACAAAAAACGTATTGGTCATTCAAATAACTCTTCGATCCTTATTTTCAGCTGCCCATATTTAGAGAGACATTTTTTGAACTC</canonical>
            <polymorphic>GCATATTCTTTCTTGATTGTTTTGTGTTCTGGGTTTATCAAAGCTAACAAAATAGGTTCTTTGAAAAAAACGTCTACTGCAGATTTCTCAAAATATGATTTTCTCATCATTTCATCCATACAATCTAGTCGAGAAGTTGAACTTTTGGGCCCAGTGATGGAAGTAAACTGGTTACGTTACGTCTAGACGAATACCGTAAATTCAAAAAAAAAATCAAGAAAACCCTGTCTCTCCTCTTTCAAATCATCCTACAAAATGTAGACAACAATTAGGCATATTATTGCGATTCAAAACCATATGTTTCAAAATAGCACATTTAGACACTTCTATGCAGCTGAAAATGCCCATTGTCTAAAGACTAAACCAGAATTCTAAATTCGGATTACTTTCGGTCAGACATTTTCCAACTGGGTGATAATTTTGAAATGGATCAATAACCCATCTTGTTCTTTGGTCGAAAAACTATGGGTATAAACCTTTGAGTTATTTTTAATAGTATYATCATTTCCTTAACATCCTTCATACCCAATAACAAGACTTCCTTGTCTGCTCGAATACAAATTAAGTCTACAGAGAAATAGGAACAGAATCGCCTAGTATTTCCCTATGGATCTAATTAACTCATTCAATAACGTTCGTTATCTCATGATTTTCTGAACAAAAATGTTTGAGTCTAGTTTTGAGGCTCTTACATTAATCCCACCCTCTTAGTTAGTCATAAGAAATCTATTGAGGATTGATTACCATGTAACATTTCTTTTAGGTTTTTTGTTAGCTAATACTTAATCTTCAGCTCTTATGAGAATGATAAGATTAGGGTCAATTTTTTATTGATCTGAAAATGCTCTCTATGAATTTTTAGATATAAGAAGCTGATTTTCCTGCTCTATGAATCTTTGACACACGACGTTTTGCACCACAAAAAACGTATTGGTCATTCAAATAACTCTTCGATCCTTATTTTCAGCTGCCCATATTTAGAGAGACATTTTTTGAACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAATAACCCATCTTGTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>AGACTCAAACATTTTTGTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATCAATAACCCATCTTGTTCTTTGGTCGAAAAACTATGGGTATAAACCTTTGAGTTATTTTTAATAGTATTATCATTTCCTTAACATCCTTCATACCCAATAACAAGACTTCCTTGTCTGCTCGAATACAAATTAAGTCTACAGAGAAATAGGAACAGAATCGCCTAGTATTTCCCTATGGATCTAATTAACTCATTCAATAACGTTCGTTATCTCATGATTTTCTGAACAAAAATGTTTGAGTCT</canonical_amplicon>
		<polymorphic_amplicon>ATCAATAACCCATCTTGTTCTTTGGTCGAAAAACTATGGGTATAAACCTTTGAGTTATTTTTAATAGTATYATCATTTCCTTAACATCCTTCATACCCAATAACAAGACTTCCTTGTCTGCTCGAATACAAATTAAGTCTACAGAGAAATAGGAACAGAATCGCCTAGTATTTCCCTATGGATCTAATTAACTCATTCAATAACGTTCGTTATCTCATGATTTTCTGAACAAAAATGTTTGAGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26902</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>777948</contig_pos>
        <strand></strand>
        <context>AGAGAAATAG[G/A]AACAGAATCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACAAGACTTCCTTGTCTGCTCGAATACAAATTAAGTCTACAGAGAAATAG</left_flank>
        <right_flank>AACAGAATCGCCTAGTATTTCCCTATGGATCTAATTAACTCATTCAATAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCTCAAAATATGATTTTCTCATCATTTCATCCATACAATCTAGTCGAGAAGTTGAACTTTTGGGCCCAGTGATGGAAGTAAACTGGTTACGTTACGTCTAGACGAATACCGTAAATTCAAAAAAAAAATCAAGAAAACCCTGTCTCTCCTCTTTCAAATCATCCTACAAAATGTAGACAACAATTAGGCATATTATTGCGATTCAAAACCATATGTTTCAAAATAGCACATTTAGACACTTCTATGCAGCTGAAAATGCCCATTGTCTAAAGACTAAACCAGAATTCTAAATTCGGATTACTTTCGGTCAGACATTTTCCAACTGGGTGATAATTTTGAAATGGATCAATAACCCATCTTGTTCTTTGGTCGAAAAACTATGGGTATAAACCTTTGAGTTATTTTTAATAGTATTATCATTTCCTTAACATCCTTCATACCCAATAACAAGACTTCCTTGTCTGCTCGAATACAAATTAAGTCTACAGAGAAATAGGAACAGAATCGCCTAGTATTTCCCTATGGATCTAATTAACTCATTCAATAACGTTCGTTATCTCATGATTTTCTGAACAAAAATGTTTGAGTCTAGTTTTGAGGCTCTTACATTAATCCCACCCTCTTAGTTAGTCATAAGAAATCTATTGAGGATTGATTACCATGTAACATTTCTTTTAGGTTTTTTGTTAGCTAATACTTAATCTTCAGCTCTTATGAGAATGATAAGATTAGGGTCAATTTTTTATTGATCTGAAAATGCTCTCTATGAATTTTTAGATATAAGAAGCTGATTTTCCTGCTCTATGAATCTTTGACACACGACGTTTTGCACCACAAAAAACGTATTGGTCATTCAAATAACTCTTCGATCCTTATTTTCAGCTGCCCATATTTAGAGAGACATTTTTTGAACTCCATATTGTTTTCTGCATGTTTTTATTTAAACTCCCATTTTCTTTTAAATGGTAATTGTATCACCATCCAACATCATATTCCA</canonical>
            <polymorphic>ATTTCTCAAAATATGATTTTCTCATCATTTCATCCATACAATCTAGTCGAGAAGTTGAACTTTTGGGCCCAGTGATGGAAGTAAACTGGTTACGTTACGTCTAGACGAATACCGTAAATTCAAAAAAAAAATCAAGAAAACCCTGTCTCTCCTCTTTCAAATCATCCTACAAAATGTAGACAACAATTAGGCATATTATTGCGATTCAAAACCATATGTTTCAAAATAGCACATTTAGACACTTCTATGCAGCTGAAAATGCCCATTGTCTAAAGACTAAACCAGAATTCTAAATTCGGATTACTTTCGGTCAGACATTTTCCAACTGGGTGATAATTTTGAAATGGATCAATAACCCATCTTGTTCTTTGGTCGAAAAACTATGGGTATAAACCTTTGAGTTATTTTTAATAGTATTATCATTTCCTTAACATCCTTCATACCCAATAACAAGACTTCCTTGTCTGCTCGAATACAAATTAAGTCTACAGAGAAATAGRAACAGAATCGCCTAGTATTTCCCTATGGATCTAATTAACTCATTCAATAACGTTCGTTATCTCATGATTTTCTGAACAAAAATGTTTGAGTCTAGTTTTGAGGCTCTTACATTAATCCCACCCTCTTAGTTAGTCATAAGAAATCTATTGAGGATTGATTACCATGTAACATTTCTTTTAGGTTTTTTGTTAGCTAATACTTAATCTTCAGCTCTTATGAGAATGATAAGATTAGGGTCAATTTTTTATTGATCTGAAAATGCTCTCTATGAATTTTTAGATATAAGAAGCTGATTTTCCTGCTCTATGAATCTTTGACACACGACGTTTTGCACCACAAAAAACGTATTGGTCATTCAAATAACTCTTCGATCCTTATTTTCAGCTGCCCATATTTAGAGAGACATTTTTTGAACTCCATATTGTTTTCTGCATGTTTTTATTTAAACTCCCATTTTCTTTTAAATGGTAATTGTATCACCATCCAACATCATATTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTTCCTTAACATCCTTCATA</pcr_primer_p1>
		<pcr_primer_p2>TTACATGGTAATCAATCCTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCATTTCCTTAACATCCTTCATACCCAATAACAAGACTTCCTTGTCTGCTCGAATACAAATTAAGTCTACAGAGAAATAGGAACAGAATCGCCTAGTATTTCCCTATGGATCTAATTAACTCATTCAATAACGTTCGTTATCTCATGATTTTCTGAACAAAAATGTTTGAGTCTAGTTTTGAGGCTCTTACATTAATCCCACCCTCTTAGTTAGTCATAAGAAATCTATTGAGGATTGATTACCATGTAA</canonical_amplicon>
		<polymorphic_amplicon>TCATTTCCTTAACATCCTTCATACCCAATAACAAGACTTCCTTGTCTGCTCGAATACAAATTAAGTCTACAGAGAAATAGRAACAGAATCGCCTAGTATTTCCCTATGGATCTAATTAACTCATTCAATAACGTTCGTTATCTCATGATTTTCTGAACAAAAATGTTTGAGTCTAGTTTTGAGGCTCTTACATTAATCCCACCCTCTTAGTTAGTCATAAGAAATCTATTGAGGATTGATTACCATGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26903</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>777961</contig_pos>
        <strand></strand>
        <context>CAGAATCGCC[T/A]AGTATTTCCC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GTCTGCTCGAATACAAATTAAGTCTACAGAGAAATAGGAACAGAATCGCC</left_flank>
        <right_flank>AGTATTTCCCTATGGATCTAATTAACTCATTCAATAACGTTCGTTATCTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATTTTCTCATCATTTCATCCATACAATCTAGTCGAGAAGTTGAACTTTTGGGCCCAGTGATGGAAGTAAACTGGTTACGTTACGTCTAGACGAATACCGTAAATTCAAAAAAAAAATCAAGAAAACCCTGTCTCTCCTCTTTCAAATCATCCTACAAAATGTAGACAACAATTAGGCATATTATTGCGATTCAAAACCATATGTTTCAAAATAGCACATTTAGACACTTCTATGCAGCTGAAAATGCCCATTGTCTAAAGACTAAACCAGAATTCTAAATTCGGATTACTTTCGGTCAGACATTTTCCAACTGGGTGATAATTTTGAAATGGATCAATAACCCATCTTGTTCTTTGGTCGAAAAACTATGGGTATAAACCTTTGAGTTATTTTTAATAGTATTATCATTTCCTTAACATCCTTCATACCCAATAACAAGACTTCCTTGTCTGCTCGAATACAAATTAAGTCTACAGAGAAATAGGAACAGAATCGCCTAGTATTTCCCTATGGATCTAATTAACTCATTCAATAACGTTCGTTATCTCATGATTTTCTGAACAAAAATGTTTGAGTCTAGTTTTGAGGCTCTTACATTAATCCCACCCTCTTAGTTAGTCATAAGAAATCTATTGAGGATTGATTACCATGTAACATTTCTTTTAGGTTTTTTGTTAGCTAATACTTAATCTTCAGCTCTTATGAGAATGATAAGATTAGGGTCAATTTTTTATTGATCTGAAAATGCTCTCTATGAATTTTTAGATATAAGAAGCTGATTTTCCTGCTCTATGAATCTTTGACACACGACGTTTTGCACCACAAAAAACGTATTGGTCATTCAAATAACTCTTCGATCCTTATTTTCAGCTGCCCATATTTAGAGAGACATTTTTTGAACTCCATATTGTTTTCTGCATGTTTTTATTTAAACTCCCATTTTCTTTTAAATGGTAATTGTATCACCATCCAACATCATATTCCAGACACCATGGTGG</canonical>
            <polymorphic>TGATTTTCTCATCATTTCATCCATACAATCTAGTCGAGAAGTTGAACTTTTGGGCCCAGTGATGGAAGTAAACTGGTTACGTTACGTCTAGACGAATACCGTAAATTCAAAAAAAAAATCAAGAAAACCCTGTCTCTCCTCTTTCAAATCATCCTACAAAATGTAGACAACAATTAGGCATATTATTGCGATTCAAAACCATATGTTTCAAAATAGCACATTTAGACACTTCTATGCAGCTGAAAATGCCCATTGTCTAAAGACTAAACCAGAATTCTAAATTCGGATTACTTTCGGTCAGACATTTTCCAACTGGGTGATAATTTTGAAATGGATCAATAACCCATCTTGTTCTTTGGTCGAAAAACTATGGGTATAAACCTTTGAGTTATTTTTAATAGTATTATCATTTCCTTAACATCCTTCATACCCAATAACAAGACTTCCTTGTCTGCTCGAATACAAATTAAGTCTACAGAGAAATAGGAACAGAATCGCCWAGTATTTCCCTATGGATCTAATTAACTCATTCAATAACGTTCGTTATCTCATGATTTTCTGAACAAAAATGTTTGAGTCTAGTTTTGAGGCTCTTACATTAATCCCACCCTCTTAGTTAGTCATAAGAAATCTATTGAGGATTGATTACCATGTAACATTTCTTTTAGGTTTTTTGTTAGCTAATACTTAATCTTCAGCTCTTATGAGAATGATAAGATTAGGGTCAATTTTTTATTGATCTGAAAATGCTCTCTATGAATTTTTAGATATAAGAAGCTGATTTTCCTGCTCTATGAATCTTTGACACACGACGTTTTGCACCACAAAAAACGTATTGGTCATTCAAATAACTCTTCGATCCTTATTTTCAGCTGCCCATATTTAGAGAGACATTTTTTGAACTCCATATTGTTTTCTGCATGTTTTTATTTAAACTCCCATTTTCTTTTAAATGGTAATTGTATCACCATCCAACATCATATTCCAGACACCATGGTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>421 411 80 58 30</canonical_bands>
                <polymorphic_bands>491 421 58 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATTTCCTTAACATCCTTCATA</pcr_primer_p1>
		<pcr_primer_p2>TTACATGGTAATCAATCCTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCATTTCCTTAACATCCTTCATACCCAATAACAAGACTTCCTTGTCTGCTCGAATACAAATTAAGTCTACAGAGAAATAGGAACAGAATCGCCTAGTATTTCCCTATGGATCTAATTAACTCATTCAATAACGTTCGTTATCTCATGATTTTCTGAACAAAAATGTTTGAGTCTAGTTTTGAGGCTCTTACATTAATCCCACCCTCTTAGTTAGTCATAAGAAATCTATTGAGGATTGATTACCATGTAA</canonical_amplicon>
		<polymorphic_amplicon>TCATTTCCTTAACATCCTTCATACCCAATAACAAGACTTCCTTGTCTGCTCGAATACAAATTAAGTCTACAGAGAAATAGGAACAGAATCGCCWAGTATTTCCCTATGGATCTAATTAACTCATTCAATAACGTTCGTTATCTCATGATTTTCTGAACAAAAATGTTTGAGTCTAGTTTTGAGGCTCTTACATTAATCCCACCCTCTTAGTTAGTCATAAGAAATCTATTGAGGATTGATTACCATGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26904</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>778044</contig_pos>
        <strand></strand>
        <context>TTGAGTCTAG[T/C]TTTGAGGCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATAACGTTCGTTATCTCATGATTTTCTGAACAAAAATGTTTGAGTCTAG</left_flank>
        <right_flank>TTTGAGGCTCTTACATTAATCCCACCCTCTTAGTTAGTCATAAGAAATCT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGTCTAGACGAATACCGTAAATTCAAAAAAAAAATCAAGAAAACCCTGTCTCTCCTCTTTCAAATCATCCTACAAAATGTAGACAACAATTAGGCATATTATTGCGATTCAAAACCATATGTTTCAAAATAGCACATTTAGACACTTCTATGCAGCTGAAAATGCCCATTGTCTAAAGACTAAACCAGAATTCTAAATTCGGATTACTTTCGGTCAGACATTTTCCAACTGGGTGATAATTTTGAAATGGATCAATAACCCATCTTGTTCTTTGGTCGAAAAACTATGGGTATAAACCTTTGAGTTATTTTTAATAGTATTATCATTTCCTTAACATCCTTCATACCCAATAACAAGACTTCCTTGTCTGCTCGAATACAAATTAAGTCTACAGAGAAATAGGAACAGAATCGCCTAGTATTTCCCTATGGATCTAATTAACTCATTCAATAACGTTCGTTATCTCATGATTTTCTGAACAAAAATGTTTGAGTCTAGTTTTGAGGCTCTTACATTAATCCCACCCTCTTAGTTAGTCATAAGAAATCTATTGAGGATTGATTACCATGTAACATTTCTTTTAGGTTTTTTGTTAGCTAATACTTAATCTTCAGCTCTTATGAGAATGATAAGATTAGGGTCAATTTTTTATTGATCTGAAAATGCTCTCTATGAATTTTTAGATATAAGAAGCTGATTTTCCTGCTCTATGAATCTTTGACACACGACGTTTTGCACCACAAAAAACGTATTGGTCATTCAAATAACTCTTCGATCCTTATTTTCAGCTGCCCATATTTAGAGAGACATTTTTTGAACTCCATATTGTTTTCTGCATGTTTTTATTTAAACTCCCATTTTCTTTTAAATGGTAATTGTATCACCATCCAACATCATATTCCAGACACCATGGTGGACATTGAAATGACGCTCTACCACGTACTAACCAACAATCTCGAGATGAGCAAATTGTACAAATGCCCTTCGAATATGACAATG</canonical>
            <polymorphic>ACGTCTAGACGAATACCGTAAATTCAAAAAAAAAATCAAGAAAACCCTGTCTCTCCTCTTTCAAATCATCCTACAAAATGTAGACAACAATTAGGCATATTATTGCGATTCAAAACCATATGTTTCAAAATAGCACATTTAGACACTTCTATGCAGCTGAAAATGCCCATTGTCTAAAGACTAAACCAGAATTCTAAATTCGGATTACTTTCGGTCAGACATTTTCCAACTGGGTGATAATTTTGAAATGGATCAATAACCCATCTTGTTCTTTGGTCGAAAAACTATGGGTATAAACCTTTGAGTTATTTTTAATAGTATTATCATTTCCTTAACATCCTTCATACCCAATAACAAGACTTCCTTGTCTGCTCGAATACAAATTAAGTCTACAGAGAAATAGGAACAGAATCGCCTAGTATTTCCCTATGGATCTAATTAACTCATTCAATAACGTTCGTTATCTCATGATTTTCTGAACAAAAATGTTTGAGTCTAGYTTTGAGGCTCTTACATTAATCCCACCCTCTTAGTTAGTCATAAGAAATCTATTGAGGATTGATTACCATGTAACATTTCTTTTAGGTTTTTTGTTAGCTAATACTTAATCTTCAGCTCTTATGAGAATGATAAGATTAGGGTCAATTTTTTATTGATCTGAAAATGCTCTCTATGAATTTTTAGATATAAGAAGCTGATTTTCCTGCTCTATGAATCTTTGACACACGACGTTTTGCACCACAAAAAACGTATTGGTCATTCAAATAACTCTTCGATCCTTATTTTCAGCTGCCCATATTTAGAGAGACATTTTTTGAACTCCATATTGTTTTCTGCATGTTTTTATTTAAACTCCCATTTTCTTTTAAATGGTAATTGTATCACCATCCAACATCATATTCCAGACACCATGGTGGACATTGAAATGACGCTCTACCACGTACTAACCAACAATCTCGAGATGAGCAAATTGTACAAATGCCCTTCGAATATGACAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTTCCTTAACATCCTTCATA</pcr_primer_p1>
		<pcr_primer_p2>TTACATGGTAATCAATCCTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCATTTCCTTAACATCCTTCATACCCAATAACAAGACTTCCTTGTCTGCTCGAATACAAATTAAGTCTACAGAGAAATAGGAACAGAATCGCCTAGTATTTCCCTATGGATCTAATTAACTCATTCAATAACGTTCGTTATCTCATGATTTTCTGAACAAAAATGTTTGAGTCTAGTTTTGAGGCTCTTACATTAATCCCACCCTCTTAGTTAGTCATAAGAAATCTATTGAGGATTGATTACCATGTAA</canonical_amplicon>
		<polymorphic_amplicon>TCATTTCCTTAACATCCTTCATACCCAATAACAAGACTTCCTTGTCTGCTCGAATACAAATTAAGTCTACAGAGAAATAGGAACAGAATCGCCTAGTATTTCCCTATGGATCTAATTAACTCATTCAATAACGTTCGTTATCTCATGATTTTCTGAACAAAAATGTTTGAGTCTAGYTTTGAGGCTCTTACATTAATCCCACCCTCTTAGTTAGTCATAAGAAATCTATTGAGGATTGATTACCATGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26905</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>778127</contig_pos>
        <strand></strand>
        <context>ACATTTCTTT[T/A]AGGTTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GTTAGTCATAAGAAATCTATTGAGGATTGATTACCATGTAACATTTCTTT</left_flank>
        <right_flank>AGGTTTTTTGTTAGCTAATACTTAATCTTCAGCTCTTATGAGAATGATAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAACAATTAGGCATATTATTGCGATTCAAAACCATATGTTTCAAAATAGCACATTTAGACACTTCTATGCAGCTGAAAATGCCCATTGTCTAAAGACTAAACCAGAATTCTAAATTCGGATTACTTTCGGTCAGACATTTTCCAACTGGGTGATAATTTTGAAATGGATCAATAACCCATCTTGTTCTTTGGTCGAAAAACTATGGGTATAAACCTTTGAGTTATTTTTAATAGTATTATCATTTCCTTAACATCCTTCATACCCAATAACAAGACTTCCTTGTCTGCTCGAATACAAATTAAGTCTACAGAGAAATAGGAACAGAATCGCCTAGTATTTCCCTATGGATCTAATTAACTCATTCAATAACGTTCGTTATCTCATGATTTTCTGAACAAAAATGTTTGAGTCTAGTTTTGAGGCTCTTACATTAATCCCACCCTCTTAGTTAGTCATAAGAAATCTATTGAGGATTGATTACCATGTAACATTTCTTTTAGGTTTTTTGTTAGCTAATACTTAATCTTCAGCTCTTATGAGAATGATAAGATTAGGGTCAATTTTTTATTGATCTGAAAATGCTCTCTATGAATTTTTAGATATAAGAAGCTGATTTTCCTGCTCTATGAATCTTTGACACACGACGTTTTGCACCACAAAAAACGTATTGGTCATTCAAATAACTCTTCGATCCTTATTTTCAGCTGCCCATATTTAGAGAGACATTTTTTGAACTCCATATTGTTTTCTGCATGTTTTTATTTAAACTCCCATTTTCTTTTAAATGGTAATTGTATCACCATCCAACATCATATTCCAGACACCATGGTGGACATTGAAATGACGCTCTACCACGTACTAACCAACAATCTCGAGATGAGCAAATTGTACAAATGCCCTTCGAATATGACAATGAACCTTATACCAAGACCAATCATTGGATCGTATTTCATGATTTCTGGGATCGCGTTGATTGTGAGTCCAGGTGCAAGGTGTCA</canonical>
            <polymorphic>ACAACAATTAGGCATATTATTGCGATTCAAAACCATATGTTTCAAAATAGCACATTTAGACACTTCTATGCAGCTGAAAATGCCCATTGTCTAAAGACTAAACCAGAATTCTAAATTCGGATTACTTTCGGTCAGACATTTTCCAACTGGGTGATAATTTTGAAATGGATCAATAACCCATCTTGTTCTTTGGTCGAAAAACTATGGGTATAAACCTTTGAGTTATTTTTAATAGTATTATCATTTCCTTAACATCCTTCATACCCAATAACAAGACTTCCTTGTCTGCTCGAATACAAATTAAGTCTACAGAGAAATAGGAACAGAATCGCCTAGTATTTCCCTATGGATCTAATTAACTCATTCAATAACGTTCGTTATCTCATGATTTTCTGAACAAAAATGTTTGAGTCTAGTTTTGAGGCTCTTACATTAATCCCACCCTCTTAGTTAGTCATAAGAAATCTATTGAGGATTGATTACCATGTAACATTTCTTTWAGGTTTTTTGTTAGCTAATACTTAATCTTCAGCTCTTATGAGAATGATAAGATTAGGGTCAATTTTTTATTGATCTGAAAATGCTCTCTATGAATTTTTAGATATAAGAAGCTGATTTTCCTGCTCTATGAATCTTTGACACACGACGTTTTGCACCACAAAAAACGTATTGGTCATTCAAATAACTCTTCGATCCTTATTTTCAGCTGCCCATATTTAGAGAGACATTTTTTGAACTCCATATTGTTTTCTGCATGTTTTTATTTAAACTCCCATTTTCTTTTAAATGGTAATTGTATCACCATCCAACATCATATTCCAGACACCATGGTGGACATTGAAATGACGCTCTACCACGTACTAACCAACAATCTCGAGATGAGCAAATTGTACAAATGCCCTTCGAATATGACAATGAACCTTATACCAAGACCAATCATTGGATCGTATTTCATGATTTCTGGGATCGCGTTGATTGTGAGTCCAGGTGCAAGGTGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTATCTCATGATTTTCTGAAC</pcr_primer_p1>
		<pcr_primer_p2>CAGGAAAATCAGCTTCTTATATCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGTTATCTCATGATTTTCTGAACAAAAATGTTTGAGTCTAGTTTTGAGGCTCTTACATTAATCCCACCCTCTTAGTTAGTCATAAGAAATCTATTGAGGATTGATTACCATGTAACATTTCTTTTAGGTTTTTTGTTAGCTAATACTTAATCTTCAGCTCTTATGAGAATGATAAGATTAGGGTCAATTTTTTATTGATCTGAAAATGCTCTCTATGAATTTTTAGATATAAGAAGCTGATTTTCCTG</canonical_amplicon>
		<polymorphic_amplicon>CGTTATCTCATGATTTTCTGAACAAAAATGTTTGAGTCTAGTTTTGAGGCTCTTACATTAATCCCACCCTCTTAGTTAGTCATAAGAAATCTATTGAGGATTGATTACCATGTAACATTTCTTTWAGGTTTTTTGTTAGCTAATACTTAATCTTCAGCTCTTATGAGAATGATAAGATTAGGGTCAATTTTTTATTGATCTGAAAATGCTCTCTATGAATTTTTAGATATAAGAAGCTGATTTTCCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26906</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>808916</contig_pos>
        <strand></strand>
        <context>ttggaatctc[T/A]gaatctcaga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCAGAATCTCAGGATTTCAGAATTTTGGAATCTCAGAATCTTGGAATCTC</left_flank>
        <right_flank>GAATCTCAGAAAAACGTTCAGGACATAAAAAATTCTCAAGTGATGTACTA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGATCTTACCATTTATTATTGAAACTGGATTGAAATAAATGATGAATCATTTTCAGAATTTCGGAATTTCAGAATTTTAGAATTTCAGAATTTCAGATTTCAACATTTCAGATTTCAGAATTTCAGAATCTCGGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTTGGAATTTCAGAATCTGTGAATCTGAGGATGTCAAAATCACAGAATCGCAGAATCTCAGAATTTCAGAATCTCAGAACCTCAGGATTTCAGAATTTTAGAATTTCAAAATTTCAGATTTCAACATTTCAGATTTCAGAATTTCAGAATCTCGGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTTGGAATTTCAGAATCTGTGAATTTGAGAATGTCAAAATCACAGAATCGCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGGATTTCAGAATTTTGGAATCTCAGAATCTTGGAATCTCTGAATCTCAGAAAAACGTTCAGGACATAAAAAATTCTCAAGTGATGTACTAAAATCCAAAAAATCCGAAAAAAAAACTACTAGACATATTTTTGAAAAACCAAAAAAATTCCAAATGAATGGCGAAGGAGGCAAAGTAAGCGTGAAAAAATACACCAACGTACACATACATACGTATGTATTTTATGGTGACTTCACACGGGCTAAGAGCACAGAGTCAAGTGCTCCGTGAGCACAAGAAGATGACCATGAAAAGAAGATGTCATTGCTCTGAAGACGTGGAAAATTGGAGGAGGGGGAGGAGATGCAAAAATTTATGGATATCCGGGGAAATTGGAAGTGCACACGTATAGTGCACACGTATAAGGAGATAGAGATATACAAATTGCGTGGGGTAGAAATTGAAATTGGGCAGGAGAAATTGGAAATTAATGGGTTCGATATCAATTTAAACTAGACATGAAAACGGACCATAGCTTCTATTAGAATAATTCTCGAACCA</canonical>
            <polymorphic>TTGATCTTACCATTTATTATTGAAACTGGATTGAAATAAATGATGAATCATTTTCAGAATTTCGGAATTTCAGAATTTTAGAATTTCAGAATTTCAGATTTCAACATTTCAGATTTCAGAATTTCAGAATCTCGGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTTGGAATTTCAGAATCTGTGAATCTGAGGATGTCAAAATCACAGAATCGCAGAATCTCAGAATTTCAGAATCTCAGAACCTCAGGATTTCAGAATTTTAGAATTTCAAAATTTCAGATTTCAACATTTCAGATTTCAGAATTTCAGAATCTCGGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTTGGAATTTCAGAATCTGTGAATTTGAGAATGTCAAAATCACAGAATCGCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGGATTTCAGAATTTTGGAATCTCAGAATCTTGGAATCTCWGAATCTCAGAAAAACGTTCAGGACATAAAAAATTCTCAAGTGATGTACTAAAATCCAAAAAATCCGAAAAAAAAACTACTAGACATATTTTTGAAAAACCAAAAAAATTCCAAATGAATGGCGAAGGAGGCAAAGTAAGCGTGAAAAAATACACCAACGTACACATACATACGTATGTATTTTATGGTGACTTCACACGGGCTAAGAGCACAGAGTCAAGTGCTCCGTGAGCACAAGAAGATGACCATGAAAAGAAGATGTCATTGCTCTGAAGACGTGGAAAATTGGAGGAGGGGGAGGAGATGCAAAAATTTATGGATATCCGGGGAAATTGGAAGTGCACACGTATAGTGCACACGTATAAGGAGATAGAGATATACAAATTGCGTGGGGTAGAAATTGAAATTGGGCAGGAGAAATTGGAAATTAATGGGTTCGATATCAATTTAAACTAGACATGAAAACGGACCATAGCTTCTATTAGAATAATTCTCGAACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGGATTGAAATAAATGATGAAT</pcr_primer_p1>
		<pcr_primer_p2>GGATTTTAGTACATCACTTGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>531</pcr_amplicon_size>
		<canonical_amplicon>CTGGATTGAAATAAATGATGAATCATTTTCAGAATTTCGGAATTTCAGAATTTTAGAATTTCAGAATTTCAGATTTCAACATTTCAGATTTCAGAATTTCAGAATCTCGGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTTGGAATTTCAGAATCTGTGAATCTGAGGATGTCAAAATCACAGAATCGCAGAATCTCAGAATTTCAGAATCTCAGAACCTCAGGATTTCAGAATTTTAGAATTTCAAAATTTCAGATTTCAACATTTCAGATTTCAGAATTTCAGAATCTCGGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTTGGAATTTCAGAATCTGTGAATTTGAGAATGTCAAAATCACAGAATCGCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGGATTTCAGAATTTTGGAATCTCAGAATCTTGGAATCTCTGAATCTCAGAAAAACGTTCAGGACATAAAAAATTCTCAAGTGATGTACTAAAATCC</canonical_amplicon>
		<polymorphic_amplicon>CTGGATTGAAATAAATGATGAATCATTTTCAGAATTTCGGAATTTCAGAATTTTAGAATTTCAGAATTTCAGATTTCAACATTTCAGATTTCAGAATTTCAGAATCTCGGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTTGGAATTTCAGAATCTGTGAATCTGAGGATGTCAAAATCACAGAATCGCAGAATCTCAGAATTTCAGAATCTCAGAACCTCAGGATTTCAGAATTTTAGAATTTCAAAATTTCAGATTTCAACATTTCAGATTTCAGAATTTCAGAATCTCGGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTTGGAATTTCAGAATCTGTGAATTTGAGAATGTCAAAATCACAGAATCGCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGGATTTCAGAATTTTGGAATCTCAGAATCTTGGAATCTCWGAATCTCAGAAAAACGTTCAGGACATAAAAAATTCTCAAGTGATGTACTAAAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26907</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>809356</contig_pos>
        <strand></strand>
        <context>ATGGGTTCGA[T/C]ATCAATTTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGGGTAGAAATTGAAATTGGGCAGGAGAAATTGGAAATTAATGGGTTCGA</left_flank>
        <right_flank>ATCAATTTAAACTAGACATGAAAACGGACCATAGCTTCTATTAGAATAAT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAGAATCTCAGAATCTCAGGATTTCAGAATTTTGGAATCTCAGAATCTTGGAATCTCTGAATCTCAGAAAAACGTTCAGGACATAAAAAATTCTCAAGTGATGTACTAAAATCCAAAAAATCCGAAAAAAAAACTACTAGACATATTTTTGAAAAACCAAAAAAATTCCAAATGAATGGCGAAGGAGGCAAAGTAAGCGTGAAAAAATACACCAACGTACACATACATACGTATGTATTTTATGGTGACTTCACACGGGCTAAGAGCACAGAGTCAAGTGCTCCGTGAGCACAAGAAGATGACCATGAAAAGAAGATGTCATTGCTCTGAAGACGTGGAAAATTGGAGGAGGGGGAGGAGATGCAAAAATTTATGGATATCCGGGGAAATTGGAAGTGCACACGTATAGTGCACACGTATAAGGAGATAGAGATATACAAATTGCGTGGGGTAGAAATTGAAATTGGGCAGGAGAAATTGGAAATTAATGGGTTCGATATCAATTTAAACTAGACATGAAAACGGACCATAGCTTCTATTAGAATAATTCTCGAACCAACTAACTTAAGCATGACAGAACTCGACAAGGACTACAATACTATTTGAATTACTGTAACGTCAATGAACAAAATTACAAGCCATGAAGCTGCAAATGCGGGCTAGGCCGGGAACTTTGTTCATAGACAAGATATATCATTCCAAATAGTATCATTTTGTAGTACTATTTCAGTTCTACCATATCTGATGTAATTGGTCCAGAAATAACAATTCTAAAAGAAACTATGGCAGGGCCCGTTGTCAAGTCCGATTTAAACGAACTTTTGCATAAGACCAGGCATGGGAAAAAGATTTTGAAAAAGCGCGTCATTGGAGTGTGGAGGGTCCAAATATTTCTAGGAAAAAAACGTGAAAAGTGGGGTGGAAAAAGTGCCCGAGGGGGGCGGGGAGGTGGAGCACAGGCTTAGTATACCAATTTGGGATTTAGAGTTTTAATCCCT</canonical>
            <polymorphic>TTCAGAATCTCAGAATCTCAGGATTTCAGAATTTTGGAATCTCAGAATCTTGGAATCTCTGAATCTCAGAAAAACGTTCAGGACATAAAAAATTCTCAAGTGATGTACTAAAATCCAAAAAATCCGAAAAAAAAACTACTAGACATATTTTTGAAAAACCAAAAAAATTCCAAATGAATGGCGAAGGAGGCAAAGTAAGCGTGAAAAAATACACCAACGTACACATACATACGTATGTATTTTATGGTGACTTCACACGGGCTAAGAGCACAGAGTCAAGTGCTCCGTGAGCACAAGAAGATGACCATGAAAAGAAGATGTCATTGCTCTGAAGACGTGGAAAATTGGAGGAGGGGGAGGAGATGCAAAAATTTATGGATATCCGGGGAAATTGGAAGTGCACACGTATAGTGCACACGTATAAGGAGATAGAGATATACAAATTGCGTGGGGTAGAAATTGAAATTGGGCAGGAGAAATTGGAAATTAATGGGTTCGAYATCAATTTAAACTAGACATGAAAACGGACCATAGCTTCTATTAGAATAATTCTCGAACCAACTAACTTAAGCATGACAGAACTCGACAAGGACTACAATACTATTTGAATTACTGTAACGTCAATGAACAAAATTACAAGCCATGAAGCTGCAAATGCGGGCTAGGCCGGGAACTTTGTTCATAGACAAGATATATCATTCCAAATAGTATCATTTTGTAGTACTATTTCAGTTCTACCATATCTGATGTAATTGGTCCAGAAATAACAATTCTAAAAGAAACTATGGCAGGGCCCGTTGTCAAGTCCGATTTAAACGAACTTTTGCATAAGACCAGGCATGGGAAAAAGATTTTGAAAAAGCGCGTCATTGGAGTGTGGAGGGTCCAAATATTTCTAGGAAAAAAACGTGAAAAGTGGGGTGGAAAAAGTGCCCGAGGGGGGCGGGGAGGTGGAGCACAGGCTTAGTATACCAATTTGGGATTTAGAGTTTTAATCCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>500 380 120</canonical_bands>
                <polymorphic_bands>620 380</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCACACGTATAAGGAGATAGAGA</pcr_primer_p1>
		<pcr_primer_p2>TCGTTTAAATCGGACTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>407</pcr_amplicon_size>
		<canonical_amplicon>GCACACGTATAAGGAGATAGAGATATACAAATTGCGTGGGGTAGAAATTGAAATTGGGCAGGAGAAATTGGAAATTAATGGGTTCGATATCAATTTAAACTAGACATGAAAACGGACCATAGCTTCTATTAGAATAATTCTCGAACCAACTAACTTAAGCATGACAGAACTCGACAAGGACTACAATACTATTTGAATTACTGTAACGTCAATGAACAAAATTACAAGCCATGAAGCTGCAAATGCGGGCTAGGCCGGGAACTTTGTTCATAGACAAGATATATCATTCCAAATAGTATCATTTTGTAGTACTATTTCAGTTCTACCATATCTGATGTAATTGGTCCAGAAATAACAATTCTAAAAGAAACTATGGCAGGGCCCGTTGTCAAGTCCGATTTAAACGA</canonical_amplicon>
		<polymorphic_amplicon>GCACACGTATAAGGAGATAGAGATATACAAATTGCGTGGGGTAGAAATTGAAATTGGGCAGGAGAAATTGGAAATTAATGGGTTCGAYATCAATTTAAACTAGACATGAAAACGGACCATAGCTTCTATTAGAATAATTCTCGAACCAACTAACTTAAGCATGACAGAACTCGACAAGGACTACAATACTATTTGAATTACTGTAACGTCAATGAACAAAATTACAAGCCATGAAGCTGCAAATGCGGGCTAGGCCGGGAACTTTGTTCATAGACAAGATATATCATTCCAAATAGTATCATTTTGTAGTACTATTTCAGTTCTACCATATCTGATGTAATTGGTCCAGAAATAACAATTCTAAAAGAAACTATGGCAGGGCCCGTTGTCAAGTCCGATTTAAACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26908</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>830028</contig_pos>
        <strand></strand>
        <context>GTGGGCGGAG[C/T]STAAATTAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTGCTTCAAACTTTGGCAAAGGGGCGGGGCTCTGGAAAGTGGGCGGAG</left_flank>
        <right_flank>GTAAATTAGGAAATGTGGTGTCAGAATGATCATTTGGTGTGGGAGAAGAA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATCTTAGAACTTCAGCATCTGGGGATCTAAGATTCTAAAATTCTAAAATTCTGAAACTCTGGACCCTAGATCAAAAATGACGACAAAAAATGTTTCAACGAATTTTAATTTTTGATCAAAAGACTCAAATTATATCTCTTACTCATTTTCCTTTTTTTTTGAAGATGAACGAATTCAAATTTTTCAAATATCATCATTTCAGAAGCTAATGACGCTATATACGCCTTTTAGAATAACTTTGTTCACTTCTCCGTTCAAAAACGGGAAAATACGAGAATTCGGCATGTACATCGGTCAAAAAGTTGTCCAGACGCTGGAGAGCCTAATTCGCATCTTTTTTTGTTTTCAAGGTTTTTTTCTTTTTTTTCTTTTGAAAAAAAATTTTTCGAGCAGGAAAAGGCAACGATATCCGTTCTGCTCGCACAGAGAGCATCGGAAAGCTAAGCAATTGCTTCAAACTTTGGCAAAGGGGCGGGGCTCTGGAAAGTGGGCGGAGCGTAAATTAGGAAATGTGGTGTCAGAATGATCATTTGGTGTGGGAGAAGAAACAAGACAAAAAGCATATGACGAGAAAAAGTGAATAGAAAATTCTGGAACAATGAAGGAACTTTAAATTGAGTTTCAGTTTCAAACATGAGTCAACTCTTCGAATCTCTATATCTGACTAGCCTTTTTAGCTATCCAGAAATATTAAACTACAAAGTTGTTGGAAATTTTAACAATTTTATTTTTGTTGTTGGCTTTCTAGGATTCATAGTTTTTGAGATATGATTACAGGAAGTTGTACCACCGCCATGACTACCGCAGCTTTCATATCGTTATATCTCACTCCATGTGTAACTAATCAAAATTAGTTCAACTACAAACTTGTGTAAAATCTCCTGTTTAACATTTTTTTCTAAGGTTCATGGTTTTTGAGATATAGTCATTCCAATGTTGCGGCAACTGGTTACCAAACCTCCCTTCTCCTCTTTACATTCATTCCTCTCGCGCCACG</canonical>
            <polymorphic>AGAATCTTAGAACTTCAGCATCTGGGGATCTAAGATTCTAAAATTCTAAAATTCTGAAACTCTGGACCCTAGATCAAAAATGACGACAAAAAATGTTTCAACGAATTTTAATTTTTGATCAAAAGACTCAAATTATATCTCTTACTCATTTTCCTTTTTTTTTGAAGATGAACGAATTCAAATTTTTCAAATATCATCATTTCAGAAGCTAATGACGCTATATACGCCTTTTAGAATAACTTTGTTCACTTCTCCGTTCAAAAACGGGAAAATACGAGAATTCGGCATGTACATCGGTCAAAAAGTTGTCCAGACGCTGGAGAGCCTAATTCGCATCTTTTTTTGTTTTCAAGGTTTTTTTCTTTTTTTTCTTTTGAAAAAAAATTTTTCGAGCAGGAAAAGGCAACGATATCCGTTCTGCTCGCACAGAGAGCATCGGAAAGCTAAGCAATTGCTTCAAACTTTGGCAAAGGGGCGGGGCTCTGGAAAGTGGGCGGAGYGTAAATTAGGAAATGTGGTGTCAGAATGATCATTTGGTGTGGGAGAAGAAACAAGACAAAAAGCATATGACGAGAAAAAGTGAATAGAAAATTCTGGAACAATGAAGGAACTTTAAATTGAGTTTCAGTTTCAAACATGAGTCAACTCTTCGAATCTCTATATCTGACTAGCCTTTTTAGCTATCCAGAAATATTAAACTACAAAGTTGTTGGAAATTTTAACAATTTTATTTTTGTTGTTGGCTTTCTAGGATTCATAGTTTTTGAGATATGATTACAGGAAGTTGTACCACCGCCATGACTACCGCAGCTTTCATATCGTTATATCTCACTCCATGTGTAACTAATCAAAATTAGTTCAACTACAAACTTGTGTAAAATCTCCTGTTTAACATTTTTTTCTAAGGTTCATGGTTTTTGAGATATAGTCATTCCAATGTTGCGGCAACTGGTTACCAAACCTCCCTTCTCCTCTTTACATTCATTCCTCTCGCGCCACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCCTAATTCGCATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCGTCATATGCTTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>AGCCTAATTCGCATCTTTTTTTGTTTTCAAGGTTTTTTTCTTTTTTTTCTTTTGAAAAAAAATTTTTCGAGCAGGAAAAGGCAACGATATCCGTTCTGCTCGCACAGAGAGCATCGGAAAGCTAAGCAATTGCTTCAAACTTTGGCAAAGGGGCGGGGCTCTGGAAAGTGGGCGGAGCGTAAATTAGGAAATGTGGTGTCAGAATGATCATTTGGTGTGGGAGAAGAAACAAGACAAAAAGCATATGACGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>AGCCTAATTCGCATCTTTTTTTGTTTTCAAGGTTTTTTTCTTTTTTTTCTTTTGAAAAAAAATTTTTCGAGCAGGAAAAGGCAACGATATCCGTTCTGCTCGCACAGAGAGCATCGGAAAGCTAAGCAATTGCTTCAAACTTTGGCAAAGGGGCGGGGCTCTGGAAAGTGGGCGGAGYGTAAATTAGGAAATGTGGTGTCAGAATGATCATTTGGTGTGGGAGAAGAAACAAGACAAAAAGCATATGACGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26909</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>830029</contig_pos>
        <strand></strand>
        <context>TGGGCGGAGY[G/C]TAAATTAGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>ATTGCTTCAAACTTTGGCAAAGGGGCGGGGCTCTGGAAAGTGGGCGGAGC</left_flank>
        <right_flank>TAAATTAGGAAATGTGGTGTCAGAATGATCATTTGGTGTGGGAGAAGAAA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATCTTAGAACTTCAGCATCTGGGGATCTAAGATTCTAAAATTCTAAAATTCTGAAACTCTGGACCCTAGATCAAAAATGACGACAAAAAATGTTTCAACGAATTTTAATTTTTGATCAAAAGACTCAAATTATATCTCTTACTCATTTTCCTTTTTTTTTGAAGATGAACGAATTCAAATTTTTCAAATATCATCATTTCAGAAGCTAATGACGCTATATACGCCTTTTAGAATAACTTTGTTCACTTCTCCGTTCAAAAACGGGAAAATACGAGAATTCGGCATGTACATCGGTCAAAAAGTTGTCCAGACGCTGGAGAGCCTAATTCGCATCTTTTTTTGTTTTCAAGGTTTTTTTCTTTTTTTTCTTTTGAAAAAAAATTTTTCGAGCAGGAAAAGGCAACGATATCCGTTCTGCTCGCACAGAGAGCATCGGAAAGCTAAGCAATTGCTTCAAACTTTGGCAAAGGGGCGGGGCTCTGGAAAGTGGGCGGAGCGTAAATTAGGAAATGTGGTGTCAGAATGATCATTTGGTGTGGGAGAAGAAACAAGACAAAAAGCATATGACGAGAAAAAGTGAATAGAAAATTCTGGAACAATGAAGGAACTTTAAATTGAGTTTCAGTTTCAAACATGAGTCAACTCTTCGAATCTCTATATCTGACTAGCCTTTTTAGCTATCCAGAAATATTAAACTACAAAGTTGTTGGAAATTTTAACAATTTTATTTTTGTTGTTGGCTTTCTAGGATTCATAGTTTTTGAGATATGATTACAGGAAGTTGTACCACCGCCATGACTACCGCAGCTTTCATATCGTTATATCTCACTCCATGTGTAACTAATCAAAATTAGTTCAACTACAAACTTGTGTAAAATCTCCTGTTTAACATTTTTTTCTAAGGTTCATGGTTTTTGAGATATAGTCATTCCAATGTTGCGGCAACTGGTTACCAAACCTCCCTTCTCCTCTTTACATTCATTCCTCTCGCGCCACGA</canonical>
            <polymorphic>GAATCTTAGAACTTCAGCATCTGGGGATCTAAGATTCTAAAATTCTAAAATTCTGAAACTCTGGACCCTAGATCAAAAATGACGACAAAAAATGTTTCAACGAATTTTAATTTTTGATCAAAAGACTCAAATTATATCTCTTACTCATTTTCCTTTTTTTTTGAAGATGAACGAATTCAAATTTTTCAAATATCATCATTTCAGAAGCTAATGACGCTATATACGCCTTTTAGAATAACTTTGTTCACTTCTCCGTTCAAAAACGGGAAAATACGAGAATTCGGCATGTACATCGGTCAAAAAGTTGTCCAGACGCTGGAGAGCCTAATTCGCATCTTTTTTTGTTTTCAAGGTTTTTTTCTTTTTTTTCTTTTGAAAAAAAATTTTTCGAGCAGGAAAAGGCAACGATATCCGTTCTGCTCGCACAGAGAGCATCGGAAAGCTAAGCAATTGCTTCAAACTTTGGCAAAGGGGCGGGGCTCTGGAAAGTGGGCGGAGCSTAAATTAGGAAATGTGGTGTCAGAATGATCATTTGGTGTGGGAGAAGAAACAAGACAAAAAGCATATGACGAGAAAAAGTGAATAGAAAATTCTGGAACAATGAAGGAACTTTAAATTGAGTTTCAGTTTCAAACATGAGTCAACTCTTCGAATCTCTATATCTGACTAGCCTTTTTAGCTATCCAGAAATATTAAACTACAAAGTTGTTGGAAATTTTAACAATTTTATTTTTGTTGTTGGCTTTCTAGGATTCATAGTTTTTGAGATATGATTACAGGAAGTTGTACCACCGCCATGACTACCGCAGCTTTCATATCGTTATATCTCACTCCATGTGTAACTAATCAAAATTAGTTCAACTACAAACTTGTGTAAAATCTCCTGTTTAACATTTTTTTCTAAGGTTCATGGTTTTTGAGATATAGTCATTCCAATGTTGCGGCAACTGGTTACCAAACCTCCCTTCTCCTCTTTACATTCATTCCTCTCGCGCCACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCCTAATTCGCATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCGTCATATGCTTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>AGCCTAATTCGCATCTTTTTTTGTTTTCAAGGTTTTTTTCTTTTTTTTCTTTTGAAAAAAAATTTTTCGAGCAGGAAAAGGCAACGATATCCGTTCTGCTCGCACAGAGAGCATCGGAAAGCTAAGCAATTGCTTCAAACTTTGGCAAAGGGGCGGGGCTCTGGAAAGTGGGCGGAGCGTAAATTAGGAAATGTGGTGTCAGAATGATCATTTGGTGTGGGAGAAGAAACAAGACAAAAAGCATATGACGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>AGCCTAATTCGCATCTTTTTTTGTTTTCAAGGTTTTTTTCTTTTTTTTCTTTTGAAAAAAAATTTTTCGAGCAGGAAAAGGCAACGATATCCGTTCTGCTCGCACAGAGAGCATCGGAAAGCTAAGCAATTGCTTCAAACTTTGGCAAAGGGGCGGGGCTCTGGAAAGTGGGCGGAGCSTAAATTAGGAAATGTGGTGTCAGAATGATCATTTGGTGTGGGAGAAGAAACAAGACAAAAAGCATATGACGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26910</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>830049</contig_pos>
        <strand></strand>
        <context>AAATGTGGTG[T/A]CAGAATGATC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGGGGCGGGGCTCTGGAAAGTGGGCGGAGCGTAAATTAGGAAATGTGGTG</left_flank>
        <right_flank>CAGAATGATCATTTGGTGTGGGAGAAGAAACAAGACAAAAAGCATATGAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGGGGATCTAAGATTCTAAAATTCTAAAATTCTGAAACTCTGGACCCTAGATCAAAAATGACGACAAAAAATGTTTCAACGAATTTTAATTTTTGATCAAAAGACTCAAATTATATCTCTTACTCATTTTCCTTTTTTTTTGAAGATGAACGAATTCAAATTTTTCAAATATCATCATTTCAGAAGCTAATGACGCTATATACGCCTTTTAGAATAACTTTGTTCACTTCTCCGTTCAAAAACGGGAAAATACGAGAATTCGGCATGTACATCGGTCAAAAAGTTGTCCAGACGCTGGAGAGCCTAATTCGCATCTTTTTTTGTTTTCAAGGTTTTTTTCTTTTTTTTCTTTTGAAAAAAAATTTTTCGAGCAGGAAAAGGCAACGATATCCGTTCTGCTCGCACAGAGAGCATCGGAAAGCTAAGCAATTGCTTCAAACTTTGGCAAAGGGGCGGGGCTCTGGAAAGTGGGCGGAGCGTAAATTAGGAAATGTGGTGTCAGAATGATCATTTGGTGTGGGAGAAGAAACAAGACAAAAAGCATATGACGAGAAAAAGTGAATAGAAAATTCTGGAACAATGAAGGAACTTTAAATTGAGTTTCAGTTTCAAACATGAGTCAACTCTTCGAATCTCTATATCTGACTAGCCTTTTTAGCTATCCAGAAATATTAAACTACAAAGTTGTTGGAAATTTTAACAATTTTATTTTTGTTGTTGGCTTTCTAGGATTCATAGTTTTTGAGATATGATTACAGGAAGTTGTACCACCGCCATGACTACCGCAGCTTTCATATCGTTATATCTCACTCCATGTGTAACTAATCAAAATTAGTTCAACTACAAACTTGTGTAAAATCTCCTGTTTAACATTTTTTTCTAAGGTTCATGGTTTTTGAGATATAGTCATTCCAATGTTGCGGCAACTGGTTACCAAACCTCCCTTCTCCTCTTTACATTCATTCCTCTCGCGCCACGATTGCCGCCGCCGCCCCCCCC</canonical>
            <polymorphic>CTGGGGATCTAAGATTCTAAAATTCTAAAATTCTGAAACTCTGGACCCTAGATCAAAAATGACGACAAAAAATGTTTCAACGAATTTTAATTTTTGATCAAAAGACTCAAATTATATCTCTTACTCATTTTCCTTTTTTTTTGAAGATGAACGAATTCAAATTTTTCAAATATCATCATTTCAGAAGCTAATGACGCTATATACGCCTTTTAGAATAACTTTGTTCACTTCTCCGTTCAAAAACGGGAAAATACGAGAATTCGGCATGTACATCGGTCAAAAAGTTGTCCAGACGCTGGAGAGCCTAATTCGCATCTTTTTTTGTTTTCAAGGTTTTTTTCTTTTTTTTCTTTTGAAAAAAAATTTTTCGAGCAGGAAAAGGCAACGATATCCGTTCTGCTCGCACAGAGAGCATCGGAAAGCTAAGCAATTGCTTCAAACTTTGGCAAAGGGGCGGGGCTCTGGAAAGTGGGCGGAGCGTAAATTAGGAAATGTGGTGWCAGAATGATCATTTGGTGTGGGAGAAGAAACAAGACAAAAAGCATATGACGAGAAAAAGTGAATAGAAAATTCTGGAACAATGAAGGAACTTTAAATTGAGTTTCAGTTTCAAACATGAGTCAACTCTTCGAATCTCTATATCTGACTAGCCTTTTTAGCTATCCAGAAATATTAAACTACAAAGTTGTTGGAAATTTTAACAATTTTATTTTTGTTGTTGGCTTTCTAGGATTCATAGTTTTTGAGATATGATTACAGGAAGTTGTACCACCGCCATGACTACCGCAGCTTTCATATCGTTATATCTCACTCCATGTGTAACTAATCAAAATTAGTTCAACTACAAACTTGTGTAAAATCTCCTGTTTAACATTTTTTTCTAAGGTTCATGGTTTTTGAGATATAGTCATTCCAATGTTGCGGCAACTGGTTACCAAACCTCCCTTCTCCTCTTTACATTCATTCCTCTCGCGCCACGATTGCCGCCGCCGCCCCCCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>356 234 149 142 85 34</canonical_bands>
                <polymorphic_bands>356 234 227 149 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCCTAATTCGCATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCGTCATATGCTTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>AGCCTAATTCGCATCTTTTTTTGTTTTCAAGGTTTTTTTCTTTTTTTTCTTTTGAAAAAAAATTTTTCGAGCAGGAAAAGGCAACGATATCCGTTCTGCTCGCACAGAGAGCATCGGAAAGCTAAGCAATTGCTTCAAACTTTGGCAAAGGGGCGGGGCTCTGGAAAGTGGGCGGAGCGTAAATTAGGAAATGTGGTGTCAGAATGATCATTTGGTGTGGGAGAAGAAACAAGACAAAAAGCATATGACGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>AGCCTAATTCGCATCTTTTTTTGTTTTCAAGGTTTTTTTCTTTTTTTTCTTTTGAAAAAAAATTTTTCGAGCAGGAAAAGGCAACGATATCCGTTCTGCTCGCACAGAGAGCATCGGAAAGCTAAGCAATTGCTTCAAACTTTGGCAAAGGGGCGGGGCTCTGGAAAGTGGGCGGAGCGTAAATTAGGAAATGTGGTGWCAGAATGATCATTTGGTGTGGGAGAAGAAACAAGACAAAAAGCATATGACGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26911</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>830084</contig_pos>
        <strand></strand>
        <context>AAGAAACAAG[A/T]CAAAAAGCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAGGAAATGTGGTGTCAGAATGATCATTTGGTGTGGGAGAAGAAACAAG</left_flank>
        <right_flank>CAAAAAGCATATGACGAGAAAAAGTGAATAGAAAATTCTGGAACAATGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTCTGGACCCTAGATCAAAAATGACGACAAAAAATGTTTCAACGAATTTTAATTTTTGATCAAAAGACTCAAATTATATCTCTTACTCATTTTCCTTTTTTTTTGAAGATGAACGAATTCAAATTTTTCAAATATCATCATTTCAGAAGCTAATGACGCTATATACGCCTTTTAGAATAACTTTGTTCACTTCTCCGTTCAAAAACGGGAAAATACGAGAATTCGGCATGTACATCGGTCAAAAAGTTGTCCAGACGCTGGAGAGCCTAATTCGCATCTTTTTTTGTTTTCAAGGTTTTTTTCTTTTTTTTCTTTTGAAAAAAAATTTTTCGAGCAGGAAAAGGCAACGATATCCGTTCTGCTCGCACAGAGAGCATCGGAAAGCTAAGCAATTGCTTCAAACTTTGGCAAAGGGGCGGGGCTCTGGAAAGTGGGCGGAGCGTAAATTAGGAAATGTGGTGTCAGAATGATCATTTGGTGTGGGAGAAGAAACAAGACAAAAAGCATATGACGAGAAAAAGTGAATAGAAAATTCTGGAACAATGAAGGAACTTTAAATTGAGTTTCAGTTTCAAACATGAGTCAACTCTTCGAATCTCTATATCTGACTAGCCTTTTTAGCTATCCAGAAATATTAAACTACAAAGTTGTTGGAAATTTTAACAATTTTATTTTTGTTGTTGGCTTTCTAGGATTCATAGTTTTTGAGATATGATTACAGGAAGTTGTACCACCGCCATGACTACCGCAGCTTTCATATCGTTATATCTCACTCCATGTGTAACTAATCAAAATTAGTTCAACTACAAACTTGTGTAAAATCTCCTGTTTAACATTTTTTTCTAAGGTTCATGGTTTTTGAGATATAGTCATTCCAATGTTGCGGCAACTGGTTACCAAACCTCCCTTCTCCTCTTTACATTCATTCCTCTCGCGCCACGATTGCCGCCGCCGCCCCCCCCCCCCTCATATCTACGGAAACACGCTTCCCTCAAAA</canonical>
            <polymorphic>AAACTCTGGACCCTAGATCAAAAATGACGACAAAAAATGTTTCAACGAATTTTAATTTTTGATCAAAAGACTCAAATTATATCTCTTACTCATTTTCCTTTTTTTTTGAAGATGAACGAATTCAAATTTTTCAAATATCATCATTTCAGAAGCTAATGACGCTATATACGCCTTTTAGAATAACTTTGTTCACTTCTCCGTTCAAAAACGGGAAAATACGAGAATTCGGCATGTACATCGGTCAAAAAGTTGTCCAGACGCTGGAGAGCCTAATTCGCATCTTTTTTTGTTTTCAAGGTTTTTTTCTTTTTTTTCTTTTGAAAAAAAATTTTTCGAGCAGGAAAAGGCAACGATATCCGTTCTGCTCGCACAGAGAGCATCGGAAAGCTAAGCAATTGCTTCAAACTTTGGCAAAGGGGCGGGGCTCTGGAAAGTGGGCGGAGCGTAAATTAGGAAATGTGGTGTCAGAATGATCATTTGGTGTGGGAGAAGAAACAAGWCAAAAAGCATATGACGAGAAAAAGTGAATAGAAAATTCTGGAACAATGAAGGAACTTTAAATTGAGTTTCAGTTTCAAACATGAGTCAACTCTTCGAATCTCTATATCTGACTAGCCTTTTTAGCTATCCAGAAATATTAAACTACAAAGTTGTTGGAAATTTTAACAATTTTATTTTTGTTGTTGGCTTTCTAGGATTCATAGTTTTTGAGATATGATTACAGGAAGTTGTACCACCGCCATGACTACCGCAGCTTTCATATCGTTATATCTCACTCCATGTGTAACTAATCAAAATTAGTTCAACTACAAACTTGTGTAAAATCTCCTGTTTAACATTTTTTTCTAAGGTTCATGGTTTTTGAGATATAGTCATTCCAATGTTGCGGCAACTGGTTACCAAACCTCCCTTCTCCTCTTTACATTCATTCCTCTCGCGCCACGATTGCCGCCGCCGCCCCCCCCCCCCTCATATCTACGGAAACACGCTTCCCTCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCCTAATTCGCATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCCTTCATTGTTCCAGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>AGCCTAATTCGCATCTTTTTTTGTTTTCAAGGTTTTTTTCTTTTTTTTCTTTTGAAAAAAAATTTTTCGAGCAGGAAAAGGCAACGATATCCGTTCTGCTCGCACAGAGAGCATCGGAAAGCTAAGCAATTGCTTCAAACTTTGGCAAAGGGGCGGGGCTCTGGAAAGTGGGCGGAGCGTAAATTAGGAAATGTGGTGTCAGAATGATCATTTGGTGTGGGAGAAGAAACAAGACAAAAAGCATATGACGAGAAAAAGTGAATAGAAAATTCTGGAACAATGAAGGA</canonical_amplicon>
		<polymorphic_amplicon>AGCCTAATTCGCATCTTTTTTTGTTTTCAAGGTTTTTTTCTTTTTTTTCTTTTGAAAAAAAATTTTTCGAGCAGGAAAAGGCAACGATATCCGTTCTGCTCGCACAGAGAGCATCGGAAAGCTAAGCAATTGCTTCAAACTTTGGCAAAGGGGCGGGGCTCTGGAAAGTGGGCGGAGCGTAAATTAGGAAATGTGGTGTCAGAATGATCATTTGGTGTGGGAGAAGAAACAAGWCAAAAAGCATATGACGAGAAAAAGTGAATAGAAAATTCTGGAACAATGAAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26912</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>830183</contig_pos>
        <strand></strand>
        <context>ACTCTTCGAA[T/C]CTCTATATCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAGGAACTTTAAATTGAGTTTCAGTTTCAAACATGAGTCAACTCTTCGAA</left_flank>
        <right_flank>CTCTATATCTGACTAGCCTTTTTAGCTATCCAGAAATATTAAACTACAAA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTTTGAAGATGAACGAATTCAAATTTTTCAAATATCATCATTTCAGAAGCTAATGACGCTATATACGCCTTTTAGAATAACTTTGTTCACTTCTCCGTTCAAAAACGGGAAAATACGAGAATTCGGCATGTACATCGGTCAAAAAGTTGTCCAGACGCTGGAGAGCCTAATTCGCATCTTTTTTTGTTTTCAAGGTTTTTTTCTTTTTTTTCTTTTGAAAAAAAATTTTTCGAGCAGGAAAAGGCAACGATATCCGTTCTGCTCGCACAGAGAGCATCGGAAAGCTAAGCAATTGCTTCAAACTTTGGCAAAGGGGCGGGGCTCTGGAAAGTGGGCGGAGCGTAAATTAGGAAATGTGGTGTCAGAATGATCATTTGGTGTGGGAGAAGAAACAAGACAAAAAGCATATGACGAGAAAAAGTGAATAGAAAATTCTGGAACAATGAAGGAACTTTAAATTGAGTTTCAGTTTCAAACATGAGTCAACTCTTCGAATCTCTATATCTGACTAGCCTTTTTAGCTATCCAGAAATATTAAACTACAAAGTTGTTGGAAATTTTAACAATTTTATTTTTGTTGTTGGCTTTCTAGGATTCATAGTTTTTGAGATATGATTACAGGAAGTTGTACCACCGCCATGACTACCGCAGCTTTCATATCGTTATATCTCACTCCATGTGTAACTAATCAAAATTAGTTCAACTACAAACTTGTGTAAAATCTCCTGTTTAACATTTTTTTCTAAGGTTCATGGTTTTTGAGATATAGTCATTCCAATGTTGCGGCAACTGGTTACCAAACCTCCCTTCTCCTCTTTACATTCATTCCTCTCGCGCCACGATTGCCGCCGCCGCCCCCCCCCCCCTCATATCTACGGAAACACGCTTCCCTCAAAATGTCGCATCGGTGGTTCAGTGGTAGAATGCTCGCCTGCCACGCGGGCGGCCCGGGTTCGATTCCCGGTCGATGCAATTCCTTTTTTTTTATTGACGAAC</canonical>
            <polymorphic>TTTTTTTTGAAGATGAACGAATTCAAATTTTTCAAATATCATCATTTCAGAAGCTAATGACGCTATATACGCCTTTTAGAATAACTTTGTTCACTTCTCCGTTCAAAAACGGGAAAATACGAGAATTCGGCATGTACATCGGTCAAAAAGTTGTCCAGACGCTGGAGAGCCTAATTCGCATCTTTTTTTGTTTTCAAGGTTTTTTTCTTTTTTTTCTTTTGAAAAAAAATTTTTCGAGCAGGAAAAGGCAACGATATCCGTTCTGCTCGCACAGAGAGCATCGGAAAGCTAAGCAATTGCTTCAAACTTTGGCAAAGGGGCGGGGCTCTGGAAAGTGGGCGGAGCGTAAATTAGGAAATGTGGTGTCAGAATGATCATTTGGTGTGGGAGAAGAAACAAGACAAAAAGCATATGACGAGAAAAAGTGAATAGAAAATTCTGGAACAATGAAGGAACTTTAAATTGAGTTTCAGTTTCAAACATGAGTCAACTCTTCGAAYCTCTATATCTGACTAGCCTTTTTAGCTATCCAGAAATATTAAACTACAAAGTTGTTGGAAATTTTAACAATTTTATTTTTGTTGTTGGCTTTCTAGGATTCATAGTTTTTGAGATATGATTACAGGAAGTTGTACCACCGCCATGACTACCGCAGCTTTCATATCGTTATATCTCACTCCATGTGTAACTAATCAAAATTAGTTCAACTACAAACTTGTGTAAAATCTCCTGTTTAACATTTTTTTCTAAGGTTCATGGTTTTTGAGATATAGTCATTCCAATGTTGCGGCAACTGGTTACCAAACCTCCCTTCTCCTCTTTACATTCATTCCTCTCGCGCCACGATTGCCGCCGCCGCCCCCCCCCCCCTCATATCTACGGAAACACGCTTCCCTCAAAATGTCGCATCGGTGGTTCAGTGGTAGAATGCTCGCCTGCCACGCGGGCGGCCCGGGTTCGATTCCCGGTCGATGCAATTCCTTTTTTTTTATTGACGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>484 363 100 40 13</canonical_bands>
                <polymorphic_bands>484 363 113 40</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>497 363 100 40</canonical_bands>
                <polymorphic_bands>597 363 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATGAAGGAACTTTAAATTGAG</pcr_primer_p1>
		<pcr_primer_p2>TGATTAGTTACACATGGAGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAATGAAGGAACTTTAAATTGAGTTTCAGTTTCAAACATGAGTCAACTCTTCGAATCTCTATATCTGACTAGCCTTTTTAGCTATCCAGAAATATTAAACTACAAAGTTGTTGGAAATTTTAACAATTTTATTTTTGTTGTTGGCTTTCTAGGATTCATAGTTTTTGAGATATGATTACAGGAAGTTGTACCACCGCCATGACTACCGCAGCTTTCATATCGTTATATCTCACTCCATGTGTAACTAATCA</canonical_amplicon>
		<polymorphic_amplicon>CAATGAAGGAACTTTAAATTGAGTTTCAGTTTCAAACATGAGTCAACTCTTCGAAYCTCTATATCTGACTAGCCTTTTTAGCTATCCAGAAATATTAAACTACAAAGTTGTTGGAAATTTTAACAATTTTATTTTTGTTGTTGGCTTTCTAGGATTCATAGTTTTTGAGATATGATTACAGGAAGTTGTACCACCGCCATGACTACCGCAGCTTTCATATCGTTATATCTCACTCCATGTGTAACTAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26913</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>830345</contig_pos>
        <strand></strand>
        <context>GCAGCTTTCA[T/G]ATCGTTATAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AGATATGATTACAGGAAGTTGTACCACCGCCATGACTACCGCAGCTTTCA</left_flank>
        <right_flank>ATCGTTATATCTCACTCCATGTGTAACTAATCAAAATTAGTTCAACTACA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAGAGCCTAATTCGCATCTTTTTTTGTTTTCAAGGTTTTTTTCTTTTTTTTCTTTTGAAAAAAAATTTTTCGAGCAGGAAAAGGCAACGATATCCGTTCTGCTCGCACAGAGAGCATCGGAAAGCTAAGCAATTGCTTCAAACTTTGGCAAAGGGGCGGGGCTCTGGAAAGTGGGCGGAGCGTAAATTAGGAAATGTGGTGTCAGAATGATCATTTGGTGTGGGAGAAGAAACAAGACAAAAAGCATATGACGAGAAAAAGTGAATAGAAAATTCTGGAACAATGAAGGAACTTTAAATTGAGTTTCAGTTTCAAACATGAGTCAACTCTTCGAATCTCTATATCTGACTAGCCTTTTTAGCTATCCAGAAATATTAAACTACAAAGTTGTTGGAAATTTTAACAATTTTATTTTTGTTGTTGGCTTTCTAGGATTCATAGTTTTTGAGATATGATTACAGGAAGTTGTACCACCGCCATGACTACCGCAGCTTTCATATCGTTATATCTCACTCCATGTGTAACTAATCAAAATTAGTTCAACTACAAACTTGTGTAAAATCTCCTGTTTAACATTTTTTTCTAAGGTTCATGGTTTTTGAGATATAGTCATTCCAATGTTGCGGCAACTGGTTACCAAACCTCCCTTCTCCTCTTTACATTCATTCCTCTCGCGCCACGATTGCCGCCGCCGCCCCCCCCCCCCTCATATCTACGGAAACACGCTTCCCTCAAAATGTCGCATCGGTGGTTCAGTGGTAGAATGCTCGCCTGCCACGCGGGCGGCCCGGGTTCGATTCCCGGTCGATGCAATTCCTTTTTTTTTATTGACGAACTTTCGAGGTTTGATCATAACTCTGCCGCCTTCAAAAAGTGTATCTTCGTCAGTACATAAATCAAATCAAATTATGGAACTCCCAAAGCTCAAAATCTCCTATTTTTATCTCTTTTTATTTTGGAAACTCTCCAAAATTTTCGAAGAACAGCTTTGACGTCAA</canonical>
            <polymorphic>TGGAGAGCCTAATTCGCATCTTTTTTTGTTTTCAAGGTTTTTTTCTTTTTTTTCTTTTGAAAAAAAATTTTTCGAGCAGGAAAAGGCAACGATATCCGTTCTGCTCGCACAGAGAGCATCGGAAAGCTAAGCAATTGCTTCAAACTTTGGCAAAGGGGCGGGGCTCTGGAAAGTGGGCGGAGCGTAAATTAGGAAATGTGGTGTCAGAATGATCATTTGGTGTGGGAGAAGAAACAAGACAAAAAGCATATGACGAGAAAAAGTGAATAGAAAATTCTGGAACAATGAAGGAACTTTAAATTGAGTTTCAGTTTCAAACATGAGTCAACTCTTCGAATCTCTATATCTGACTAGCCTTTTTAGCTATCCAGAAATATTAAACTACAAAGTTGTTGGAAATTTTAACAATTTTATTTTTGTTGTTGGCTTTCTAGGATTCATAGTTTTTGAGATATGATTACAGGAAGTTGTACCACCGCCATGACTACCGCAGCTTTCAKATCGTTATATCTCACTCCATGTGTAACTAATCAAAATTAGTTCAACTACAAACTTGTGTAAAATCTCCTGTTTAACATTTTTTTCTAAGGTTCATGGTTTTTGAGATATAGTCATTCCAATGTTGCGGCAACTGGTTACCAAACCTCCCTTCTCCTCTTTACATTCATTCCTCTCGCGCCACGATTGCCGCCGCCGCCCCCCCCCCCCTCATATCTACGGAAACACGCTTCCCTCAAAATGTCGCATCGGTGGTTCAGTGGTAGAATGCTCGCCTGCCACGCGGGCGGCCCGGGTTCGATTCCCGGTCGATGCAATTCCTTTTTTTTTATTGACGAACTTTCGAGGTTTGATCATAACTCTGCCGCCTTCAAAAAGTGTATCTTCGTCAGTACATAAATCAAATCAAATTATGGAACTCCCAAAGCTCAAAATCTCCTATTTTTATCTCTTTTTATTTTGGAAACTCTCCAAAATTTTCGAAGAACAGCTTTGACGTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCTTTCTAGGATTCATAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>AGAGGAATGAATGTAAAGAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGCTTTCTAGGATTCATAGTTTTTGAGATATGATTACAGGAAGTTGTACCACCGCCATGACTACCGCAGCTTTCATATCGTTATATCTCACTCCATGTGTAACTAATCAAAATTAGTTCAACTACAAACTTGTGTAAAATCTCCTGTTTAACATTTTTTTCTAAGGTTCATGGTTTTTGAGATATAGTCATTCCAATGTTGCGGCAACTGGTTACCAAACCTCCCTTCTCCTCTTTACATTCATTCCTCT</canonical_amplicon>
		<polymorphic_amplicon>GGCTTTCTAGGATTCATAGTTTTTGAGATATGATTACAGGAAGTTGTACCACCGCCATGACTACCGCAGCTTTCAKATCGTTATATCTCACTCCATGTGTAACTAATCAAAATTAGTTCAACTACAAACTTGTGTAAAATCTCCTGTTTAACATTTTTTTCTAAGGTTCATGGTTTTTGAGATATAGTCATTCCAATGTTGCGGCAACTGGTTACCAAACCTCCCTTCTCCTCTTTACATTCATTCCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26914</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>901505</contig_pos>
        <strand></strand>
        <context>TGGTTATGTG[C/A]TATTATTTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TGCAGGTATAATTTTTATTCTGTATGCGTGTATGTGTTGATGGTTATGTG</left_flank>
        <right_flank>TATTATTTGGAAATAGTGTTACTATTCGGTTCTCCACTTTAATTGAATTG</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGAATTTCAGAATTTACAAATTTCAAATAAAAAAAACTCACTTTGCTCAGCACTCATACTTTGTGAATCAGTGGTGCTCAAAAACAATGCGAAACAGGAGATTATAATATGAATTCTAGACATTTTTTTCTGGAAAAAAAAAACTTAAAACTAAGAAAAAATTTCTGTCAAAAAAAGTGACGAAAGTGATTATTTGAACTCAACTGCTAGAATAACATCAGAAACTTTTAGACTAGAGTAAGAAGAAAAAAGTTTTTTTTGTAGATCAAATTTCCTGGCTCTGGACGCATTCTGTTACACACCTGTGACCTATTAGGACCATTTCTCGAATTTTCGTAGTCGCCTAGAAAAAAGAATAAGCTGAGCAATCGCCATGAAAGAGCAAAGTTTATTCATGTCCCCTCTCTCTAAGTTGTAAAATAATTTATTATTTCTGTTAATCATTATTGCAGGTATAATTTTTATTCTGTATGCGTGTATGTGTTGATGGTTATGTGCTATTATTTGGAAATAGTGTTACTATTCGGTTCTCCACTTTAATTGAATTGTTTAGTTATTCGTGTATCTGTGTTTTGTGTGATTGTATTGTATTCCTTTTCTCTTTTTTCTCTTTTTCCACGACGGAAGGTCGTAATCAATAAATAAATAAAAATAAATGTGTGGGTTGTTATACGAACAAAATTATAAAGTTAATCAAATTCGCGAGCTGGAAAATAACATCAGAATGTACTCGATGTTGTTCCAGAACTTTCCGATTTTCGATTTCCGTGGATCGGTGTGTCCGGATGTCCACTTTTTCCGGAAGTATGGGATGAGCAGGACTACGAAAATGGACGTCATAACTATAACAAGACCAACAATAACGTAGATGGCTGAAAAATGCTTTTCTCGATTTTTGATGGTCAACTTGGTTGAAACTGAACAAAAATTGTTTTCATTTTGCAACAAATATCACGTTTCTAGCTCAATTTTGAAGTGAGTTATAGCCTTATTTGCTT</canonical>
            <polymorphic>TCAGAATTTCAGAATTTACAAATTTCAAATAAAAAAAACTCACTTTGCTCAGCACTCATACTTTGTGAATCAGTGGTGCTCAAAAACAATGCGAAACAGGAGATTATAATATGAATTCTAGACATTTTTTTCTGGAAAAAAAAAACTTAAAACTAAGAAAAAATTTCTGTCAAAAAAAGTGACGAAAGTGATTATTTGAACTCAACTGCTAGAATAACATCAGAAACTTTTAGACTAGAGTAAGAAGAAAAAAGTTTTTTTTGTAGATCAAATTTCCTGGCTCTGGACGCATTCTGTTACACACCTGTGACCTATTAGGACCATTTCTCGAATTTTCGTAGTCGCCTAGAAAAAAGAATAAGCTGAGCAATCGCCATGAAAGAGCAAAGTTTATTCATGTCCCCTCTCTCTAAGTTGTAAAATAATTTATTATTTCTGTTAATCATTATTGCAGGTATAATTTTTATTCTGTATGCGTGTATGTGTTGATGGTTATGTGMTATTATTTGGAAATAGTGTTACTATTCGGTTCTCCACTTTAATTGAATTGTTTAGTTATTCGTGTATCTGTGTTTTGTGTGATTGTATTGTATTCCTTTTCTCTTTTTTCTCTTTTTCCACGACGGAAGGTCGTAATCAATAAATAAATAAAAATAAATGTGTGGGTTGTTATACGAACAAAATTATAAAGTTAATCAAATTCGCGAGCTGGAAAATAACATCAGAATGTACTCGATGTTGTTCCAGAACTTTCCGATTTTCGATTTCCGTGGATCGGTGTGTCCGGATGTCCACTTTTTCCGGAAGTATGGGATGAGCAGGACTACGAAAATGGACGTCATAACTATAACAAGACCAACAATAACGTAGATGGCTGAAAAATGCTTTTCTCGATTTTTGATGGTCAACTTGGTTGAAACTGAACAAAAATTGTTTTCATTTTGCAACAAATATCACGTTTCTAGCTCAATTTTGAAGTGAGTTATAGCCTTATTTGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGAATAAGCTGAGCAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAGGAATACAATACAATCACACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGAATAAGCTGAGCAATCGCCATGAAAGAGCAAAGTTTATTCATGTCCCCTCTCTCTAAGTTGTAAAATAATTTATTATTTCTGTTAATCATTATTGCAGGTATAATTTTTATTCTGTATGCGTGTATGTGTTGATGGTTATGTGCTATTATTTGGAAATAGTGTTACTATTCGGTTCTCCACTTTAATTGAATTGTTTAGTTATTCGTGTATCTGTGTTTTGTGTGATTGTATTGTATTCCTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGAATAAGCTGAGCAATCGCCATGAAAGAGCAAAGTTTATTCATGTCCCCTCTCTCTAAGTTGTAAAATAATTTATTATTTCTGTTAATCATTATTGCAGGTATAATTTTTATTCTGTATGCGTGTATGTGTTGATGGTTATGTGMTATTATTTGGAAATAGTGTTACTATTCGGTTCTCCACTTTAATTGAATTGTTTAGTTATTCGTGTATCTGTGTTTTGTGTGATTGTATTGTATTCCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26915</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>901647</contig_pos>
        <strand></strand>
        <context>CGTAATCaat[A/C]aataaataaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTCCTTTTCTCTTTTTTCTCTTTTTCCACGACGGAAGGTCGTAATCAAT</left_flank>
        <right_flank>AATAAATAAAAATAAATGTGTGGGTTGTTATACGAACAAAATTATAAAGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTTAAAACTAAGAAAAAATTTCTGTCAAAAAAAGTGACGAAAGTGATTATTTGAACTCAACTGCTAGAATAACATCAGAAACTTTTAGACTAGAGTAAGAAGAAAAAAGTTTTTTTTGTAGATCAAATTTCCTGGCTCTGGACGCATTCTGTTACACACCTGTGACCTATTAGGACCATTTCTCGAATTTTCGTAGTCGCCTAGAAAAAAGAATAAGCTGAGCAATCGCCATGAAAGAGCAAAGTTTATTCATGTCCCCTCTCTCTAAGTTGTAAAATAATTTATTATTTCTGTTAATCATTATTGCAGGTATAATTTTTATTCTGTATGCGTGTATGTGTTGATGGTTATGTGCTATTATTTGGAAATAGTGTTACTATTCGGTTCTCCACTTTAATTGAATTGTTTAGTTATTCGTGTATCTGTGTTTTGTGTGATTGTATTGTATTCCTTTTCTCTTTTTTCTCTTTTTCCACGACGGAAGGTCGTAATCAATAAATAAATAAAAATAAATGTGTGGGTTGTTATACGAACAAAATTATAAAGTTAATCAAATTCGCGAGCTGGAAAATAACATCAGAATGTACTCGATGTTGTTCCAGAACTTTCCGATTTTCGATTTCCGTGGATCGGTGTGTCCGGATGTCCACTTTTTCCGGAAGTATGGGATGAGCAGGACTACGAAAATGGACGTCATAACTATAACAAGACCAACAATAACGTAGATGGCTGAAAAATGCTTTTCTCGATTTTTGATGGTCAACTTGGTTGAAACTGAACAAAAATTGTTTTCATTTTGCAACAAATATCACGTTTCTAGCTCAATTTTGAAGTGAGTTATAGCCTTATTTGCTTCGAGGGCGCGGTCGGCTGGAGGCGATGAGCGGCGCGCGCGACAGTCAGGCATCACTCCTCACTGTCGCCCGCGCTGCTTGTCGCTTCTTGCTGGCCGCGTCTTCGGCTATGACTCGCTTCAAAATTATGATAGGAGTTCGAT</canonical>
            <polymorphic>AAACTTAAAACTAAGAAAAAATTTCTGTCAAAAAAAGTGACGAAAGTGATTATTTGAACTCAACTGCTAGAATAACATCAGAAACTTTTAGACTAGAGTAAGAAGAAAAAAGTTTTTTTTGTAGATCAAATTTCCTGGCTCTGGACGCATTCTGTTACACACCTGTGACCTATTAGGACCATTTCTCGAATTTTCGTAGTCGCCTAGAAAAAAGAATAAGCTGAGCAATCGCCATGAAAGAGCAAAGTTTATTCATGTCCCCTCTCTCTAAGTTGTAAAATAATTTATTATTTCTGTTAATCATTATTGCAGGTATAATTTTTATTCTGTATGCGTGTATGTGTTGATGGTTATGTGCTATTATTTGGAAATAGTGTTACTATTCGGTTCTCCACTTTAATTGAATTGTTTAGTTATTCGTGTATCTGTGTTTTGTGTGATTGTATTGTATTCCTTTTCTCTTTTTTCTCTTTTTCCACGACGGAAGGTCGTAATCAATMAATAAATAAAAATAAATGTGTGGGTTGTTATACGAACAAAATTATAAAGTTAATCAAATTCGCGAGCTGGAAAATAACATCAGAATGTACTCGATGTTGTTCCAGAACTTTCCGATTTTCGATTTCCGTGGATCGGTGTGTCCGGATGTCCACTTTTTCCGGAAGTATGGGATGAGCAGGACTACGAAAATGGACGTCATAACTATAACAAGACCAACAATAACGTAGATGGCTGAAAAATGCTTTTCTCGATTTTTGATGGTCAACTTGGTTGAAACTGAACAAAAATTGTTTTCATTTTGCAACAAATATCACGTTTCTAGCTCAATTTTGAAGTGAGTTATAGCCTTATTTGCTTCGAGGGCGCGGTCGGCTGGAGGCGATGAGCGGCGCGCGCGACAGTCAGGCATCACTCCTCACTGTCGCCCGCGCTGCTTGTCGCTTCTTGCTGGCCGCGTCTTCGGCTATGACTCGCTTCAAAATTATGATAGGAGTTCGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTATGTGTTGATGGTTATGTG</pcr_primer_p1>
		<pcr_primer_p2>TTCTGATGTTATTTTCCAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTGTATGTGTTGATGGTTATGTGCTATTATTTGGAAATAGTGTTACTATTCGGTTCTCCACTTTAATTGAATTGTTTAGTTATTCGTGTATCTGTGTTTTGTGTGATTGTATTGTATTCCTTTTCTCTTTTTTCTCTTTTTCCACGACGGAAGGTCGTAATCAATAAATAAATAAAAATAAATGTGTGGGTTGTTATACGAACAAAATTATAAAGTTAATCAAATTCGCGAGCTGGAAAATAACATCAGAA</canonical_amplicon>
		<polymorphic_amplicon>GTGTATGTGTTGATGGTTATGTGCTATTATTTGGAAATAGTGTTACTATTCGGTTCTCCACTTTAATTGAATTGTTTAGTTATTCGTGTATCTGTGTTTTGTGTGATTGTATTGTATTCCTTTTCTCTTTTTTCTCTTTTTCCACGACGGAAGGTCGTAATCAATMAATAAATAAAAATAAATGTGTGGGTTGTTATACGAACAAAATTATAAAGTTAATCAAATTCGCGAGCTGGAAAATAACATCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26916</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>902068</contig_pos>
        <strand></strand>
        <context>cactcctcac[T/A]gtcgcccgcr</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CGGCTGGAGGCGATGAGCGGCGCGCGCGACAGTCAGGCATCACTCCTCAC</left_flank>
        <right_flank>GTCGCCCGCGCTGCTTGTCGCTTCTTGCTGGCCGCGTCTTCGGCTATGAC</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATCTGTGTTTTGTGTGATTGTATTGTATTCCTTTTCTCTTTTTTCTCTTTTTCCACGACGGAAGGTCGTAATCAATAAATAAATAAAAATAAATGTGTGGGTTGTTATACGAACAAAATTATAAAGTTAATCAAATTCGCGAGCTGGAAAATAACATCAGAATGTACTCGATGTTGTTCCAGAACTTTCCGATTTTCGATTTCCGTGGATCGGTGTGTCCGGATGTCCACTTTTTCCGGAAGTATGGGATGAGCAGGACTACGAAAATGGACGTCATAACTATAACAAGACCAACAATAACGTAGATGGCTGAAAAATGCTTTTCTCGATTTTTGATGGTCAACTTGGTTGAAACTGAACAAAAATTGTTTTCATTTTGCAACAAATATCACGTTTCTAGCTCAATTTTGAAGTGAGTTATAGCCTTATTTGCTTCGAGGGCGCGGTCGGCTGGAGGCGATGAGCGGCGCGCGCGACAGTCAGGCATCACTCCTCACTGTCGCCCGCGCTGCTTGTCGCTTCTTGCTGGCCGCGTCTTCGGCTATGACTCGCTTCAAAATTATGATAGGAGTTCGATTTTTGTCGCAAAATGTAGAGTAAAAATTGCTTGTATCAAAAATTACCTAACAATAGAATCCTTGCAGTTTTCGGAAGGTCGGCAGCCAGAATAACCAATATAAAAGTCATTGCCATAATGTTGGTAAGACCCACTGAGATCTGAAGTACGCATTTTCATGACCTACATAGCTTTTTCGAGGCCTTCATATGTACCTTCTCTCCAACATTCTCGATATCCATAAAAAGTGCAATTATAGTTAACAAGTTGATAAAATAGGCTGGCACCATCACCAGAGACACGTAGAAACCTGGATTTCTCTCTATGCGAGCCACGAATCTTTGAATTGAACTCAAGCTCGGATTCAATGAATCCTGTTCAGCTACACCGACATATGTCACTTTCCATTCTCCATTTCCCAACTGAGACATTGGTTTTGCCA</canonical>
            <polymorphic>GTATCTGTGTTTTGTGTGATTGTATTGTATTCCTTTTCTCTTTTTTCTCTTTTTCCACGACGGAAGGTCGTAATCAATAAATAAATAAAAATAAATGTGTGGGTTGTTATACGAACAAAATTATAAAGTTAATCAAATTCGCGAGCTGGAAAATAACATCAGAATGTACTCGATGTTGTTCCAGAACTTTCCGATTTTCGATTTCCGTGGATCGGTGTGTCCGGATGTCCACTTTTTCCGGAAGTATGGGATGAGCAGGACTACGAAAATGGACGTCATAACTATAACAAGACCAACAATAACGTAGATGGCTGAAAAATGCTTTTCTCGATTTTTGATGGTCAACTTGGTTGAAACTGAACAAAAATTGTTTTCATTTTGCAACAAATATCACGTTTCTAGCTCAATTTTGAAGTGAGTTATAGCCTTATTTGCTTCGAGGGCGCGGTCGGCTGGAGGCGATGAGCGGCGCGCGCGACAGTCAGGCATCACTCCTCACWGTCGCCCGCGCTGCTTGTCGCTTCTTGCTGGCCGCGTCTTCGGCTATGACTCGCTTCAAAATTATGATAGGAGTTCGATTTTTGTCGCAAAATGTAGAGTAAAAATTGCTTGTATCAAAAATTACCTAACAATAGAATCCTTGCAGTTTTCGGAAGGTCGGCAGCCAGAATAACCAATATAAAAGTCATTGCCATAATGTTGGTAAGACCCACTGAGATCTGAAGTACGCATTTTCATGACCTACATAGCTTTTTCGAGGCCTTCATATGTACCTTCTCTCCAACATTCTCGATATCCATAAAAAGTGCAATTATAGTTAACAAGTTGATAAAATAGGCTGGCACCATCACCAGAGACACGTAGAAACCTGGATTTCTCTCTATGCGAGCCACGAATCTTTGAATTGAACTCAAGCTCGGATTCAATGAATCCTGTTCAGCTACACCGACATATGTCACTTTCCATTCTCCATTTCCCAACTGAGACATTGGTTTTGCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTTGAAACTGAACAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGATACAAGCAATTTTTACTCTACA</pcr_primer_p2>
		<pcr_amplicon_size>270</pcr_amplicon_size>
		<canonical_amplicon>TGGTTGAAACTGAACAAAAATTGTTTTCATTTTGCAACAAATATCACGTTTCTAGCTCAATTTTGAAGTGAGTTATAGCCTTATTTGCTTCGAGGGCGCGGTCGGCTGGAGGCGATGAGCGGCGCGCGCGACAGTCAGGCATCACTCCTCACTGTCGCCCGCGCTGCTTGTCGCTTCTTGCTGGCCGCGTCTTCGGCTATGACTCGCTTCAAAATTATGATAGGAGTTCGATTTTTGTCGCAAAATGTAGAGTAAAAATTGCTTGTATCA</canonical_amplicon>
		<polymorphic_amplicon>TGGTTGAAACTGAACAAAAATTGTTTTCATTTTGCAACAAATATCACGTTTCTAGCTCAATTTTGAAGTGAGTTATAGCCTTATTTGCTTCGAGGGCGCGGTCGGCTGGAGGCGATGAGCGGCGCGCGCGACAGTCAGGCATCACTCCTCACWGTCGCCCGCGCTGCTTGTCGCTTCTTGCTGGCCGCGTCTTCGGCTATGACTCGCTTCAAAATTATGATAGGAGTTCGATTTTTGTCGCAAAATGTAGAGTAAAAATTGCTTGTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26917</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>902078</contig_pos>
        <strand></strand>
        <context>wgtcgcccgc[G/A]ctgctygtcg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGATGAGCGGCGCGCGCGACAGTCAGGCATCACTCCTCACTGTCGCCCGC</left_flank>
        <right_flank>CTGCTTGTCGCTTCTTGCTGGCCGCGTCTTCGGCTATGACTCGCTTCAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGTGTGATTGTATTGTATTCCTTTTCTCTTTTTTCTCTTTTTCCACGACGGAAGGTCGTAATCAATAAATAAATAAAAATAAATGTGTGGGTTGTTATACGAACAAAATTATAAAGTTAATCAAATTCGCGAGCTGGAAAATAACATCAGAATGTACTCGATGTTGTTCCAGAACTTTCCGATTTTCGATTTCCGTGGATCGGTGTGTCCGGATGTCCACTTTTTCCGGAAGTATGGGATGAGCAGGACTACGAAAATGGACGTCATAACTATAACAAGACCAACAATAACGTAGATGGCTGAAAAATGCTTTTCTCGATTTTTGATGGTCAACTTGGTTGAAACTGAACAAAAATTGTTTTCATTTTGCAACAAATATCACGTTTCTAGCTCAATTTTGAAGTGAGTTATAGCCTTATTTGCTTCGAGGGCGCGGTCGGCTGGAGGCGATGAGCGGCGCGCGCGACAGTCAGGCATCACTCCTCACTGTCGCCCGCGCTGCTTGTCGCTTCTTGCTGGCCGCGTCTTCGGCTATGACTCGCTTCAAAATTATGATAGGAGTTCGATTTTTGTCGCAAAATGTAGAGTAAAAATTGCTTGTATCAAAAATTACCTAACAATAGAATCCTTGCAGTTTTCGGAAGGTCGGCAGCCAGAATAACCAATATAAAAGTCATTGCCATAATGTTGGTAAGACCCACTGAGATCTGAAGTACGCATTTTCATGACCTACATAGCTTTTTCGAGGCCTTCATATGTACCTTCTCTCCAACATTCTCGATATCCATAAAAAGTGCAATTATAGTTAACAAGTTGATAAAATAGGCTGGCACCATCACCAGAGACACGTAGAAACCTGGATTTCTCTCTATGCGAGCCACGAATCTTTGAATTGAACTCAAGCTCGGATTCAATGAATCCTGTTCAGCTACACCGACATATGTCACTTTCCATTCTCCATTTCCCAACTGAGACATTGGTTTTGCCATTGCTTCCAT</canonical>
            <polymorphic>TTTGTGTGATTGTATTGTATTCCTTTTCTCTTTTTTCTCTTTTTCCACGACGGAAGGTCGTAATCAATAAATAAATAAAAATAAATGTGTGGGTTGTTATACGAACAAAATTATAAAGTTAATCAAATTCGCGAGCTGGAAAATAACATCAGAATGTACTCGATGTTGTTCCAGAACTTTCCGATTTTCGATTTCCGTGGATCGGTGTGTCCGGATGTCCACTTTTTCCGGAAGTATGGGATGAGCAGGACTACGAAAATGGACGTCATAACTATAACAAGACCAACAATAACGTAGATGGCTGAAAAATGCTTTTCTCGATTTTTGATGGTCAACTTGGTTGAAACTGAACAAAAATTGTTTTCATTTTGCAACAAATATCACGTTTCTAGCTCAATTTTGAAGTGAGTTATAGCCTTATTTGCTTCGAGGGCGCGGTCGGCTGGAGGCGATGAGCGGCGCGCGCGACAGTCAGGCATCACTCCTCACTGTCGCCCGCRCTGCTTGTCGCTTCTTGCTGGCCGCGTCTTCGGCTATGACTCGCTTCAAAATTATGATAGGAGTTCGATTTTTGTCGCAAAATGTAGAGTAAAAATTGCTTGTATCAAAAATTACCTAACAATAGAATCCTTGCAGTTTTCGGAAGGTCGGCAGCCAGAATAACCAATATAAAAGTCATTGCCATAATGTTGGTAAGACCCACTGAGATCTGAAGTACGCATTTTCATGACCTACATAGCTTTTTCGAGGCCTTCATATGTACCTTCTCTCCAACATTCTCGATATCCATAAAAAGTGCAATTATAGTTAACAAGTTGATAAAATAGGCTGGCACCATCACCAGAGACACGTAGAAACCTGGATTTCTCTCTATGCGAGCCACGAATCTTTGAATTGAACTCAAGCTCGGATTCAATGAATCCTGTTCAGCTACACCGACATATGTCACTTTCCATTCTCCATTTCCCAACTGAGACATTGGTTTTGCCATTGCTTCCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>476 304 131 33 26 26 2 2</canonical_bands>
                <polymorphic_bands>476 304 131 59 26 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 435 35 26 2 2</canonical_bands>
                <polymorphic_bands>535 435 26 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>459 346 130 44 21</canonical_bands>
                <polymorphic_bands>459 346 130 65</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>500 349 151</canonical_bands>
                <polymorphic_bands>651 349</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGTTGAAACTGAACAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGATACAAGCAATTTTTACTCTACA</pcr_primer_p2>
		<pcr_amplicon_size>270</pcr_amplicon_size>
		<canonical_amplicon>TGGTTGAAACTGAACAAAAATTGTTTTCATTTTGCAACAAATATCACGTTTCTAGCTCAATTTTGAAGTGAGTTATAGCCTTATTTGCTTCGAGGGCGCGGTCGGCTGGAGGCGATGAGCGGCGCGCGCGACAGTCAGGCATCACTCCTCACTGTCGCCCGCGCTGCTTGTCGCTTCTTGCTGGCCGCGTCTTCGGCTATGACTCGCTTCAAAATTATGATAGGAGTTCGATTTTTGTCGCAAAATGTAGAGTAAAAATTGCTTGTATCA</canonical_amplicon>
		<polymorphic_amplicon>TGGTTGAAACTGAACAAAAATTGTTTTCATTTTGCAACAAATATCACGTTTCTAGCTCAATTTTGAAGTGAGTTATAGCCTTATTTGCTTCGAGGGCGCGGTCGGCTGGAGGCGATGAGCGGCGCGCGCGACAGTCAGGCATCACTCCTCACTGTCGCCCGCRCTGCTTGTCGCTTCTTGCTGGCCGCGTCTTCGGCTATGACTCGCTTCAAAATTATGATAGGAGTTCGATTTTTGTCGCAAAATGTAGAGTAAAAATTGCTTGTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26918</snp_id>
        <super_contig>c002701361.Contig1</super_contig>
        <contig_pos>902084</contig_pos>
        <strand></strand>
        <context>ccgcrctgct[T/C]gtcgcttctt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCGGCGCGCGCGACAGTCAGGCATCACTCCTCACTGTCGCCCGCGCTGCT</left_flank>
        <right_flank>GTCGCTTCTTGCTGGCCGCGTCTTCGGCTATGACTCGCTTCAAAATTATG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATTGTATTGTATTCCTTTTCTCTTTTTTCTCTTTTTCCACGACGGAAGGTCGTAATCAATAAATAAATAAAAATAAATGTGTGGGTTGTTATACGAACAAAATTATAAAGTTAATCAAATTCGCGAGCTGGAAAATAACATCAGAATGTACTCGATGTTGTTCCAGAACTTTCCGATTTTCGATTTCCGTGGATCGGTGTGTCCGGATGTCCACTTTTTCCGGAAGTATGGGATGAGCAGGACTACGAAAATGGACGTCATAACTATAACAAGACCAACAATAACGTAGATGGCTGAAAAATGCTTTTCTCGATTTTTGATGGTCAACTTGGTTGAAACTGAACAAAAATTGTTTTCATTTTGCAACAAATATCACGTTTCTAGCTCAATTTTGAAGTGAGTTATAGCCTTATTTGCTTCGAGGGCGCGGTCGGCTGGAGGCGATGAGCGGCGCGCGCGACAGTCAGGCATCACTCCTCACTGTCGCCCGCGCTGCTTGTCGCTTCTTGCTGGCCGCGTCTTCGGCTATGACTCGCTTCAAAATTATGATAGGAGTTCGATTTTTGTCGCAAAATGTAGAGTAAAAATTGCTTGTATCAAAAATTACCTAACAATAGAATCCTTGCAGTTTTCGGAAGGTCGGCAGCCAGAATAACCAATATAAAAGTCATTGCCATAATGTTGGTAAGACCCACTGAGATCTGAAGTACGCATTTTCATGACCTACATAGCTTTTTCGAGGCCTTCATATGTACCTTCTCTCCAACATTCTCGATATCCATAAAAAGTGCAATTATAGTTAACAAGTTGATAAAATAGGCTGGCACCATCACCAGAGACACGTAGAAACCTGGATTTCTCTCTATGCGAGCCACGAATCTTTGAATTGAACTCAAGCTCGGATTCAATGAATCCTGTTCAGCTACACCGACATATGTCACTTTCCATTCTCCATTTCCCAACTGAGACATTGGTTTTGCCATTGCTTCCATCTCCCC</canonical>
            <polymorphic>TGATTGTATTGTATTCCTTTTCTCTTTTTTCTCTTTTTCCACGACGGAAGGTCGTAATCAATAAATAAATAAAAATAAATGTGTGGGTTGTTATACGAACAAAATTATAAAGTTAATCAAATTCGCGAGCTGGAAAATAACATCAGAATGTACTCGATGTTGTTCCAGAACTTTCCGATTTTCGATTTCCGTGGATCGGTGTGTCCGGATGTCCACTTTTTCCGGAAGTATGGGATGAGCAGGACTACGAAAATGGACGTCATAACTATAACAAGACCAACAATAACGTAGATGGCTGAAAAATGCTTTTCTCGATTTTTGATGGTCAACTTGGTTGAAACTGAACAAAAATTGTTTTCATTTTGCAACAAATATCACGTTTCTAGCTCAATTTTGAAGTGAGTTATAGCCTTATTTGCTTCGAGGGCGCGGTCGGCTGGAGGCGATGAGCGGCGCGCGCGACAGTCAGGCATCACTCCTCACTGTCGCCCGCGCTGCTYGTCGCTTCTTGCTGGCCGCGTCTTCGGCTATGACTCGCTTCAAAATTATGATAGGAGTTCGATTTTTGTCGCAAAATGTAGAGTAAAAATTGCTTGTATCAAAAATTACCTAACAATAGAATCCTTGCAGTTTTCGGAAGGTCGGCAGCCAGAATAACCAATATAAAAGTCATTGCCATAATGTTGGTAAGACCCACTGAGATCTGAAGTACGCATTTTCATGACCTACATAGCTTTTTCGAGGCCTTCATATGTACCTTCTCTCCAACATTCTCGATATCCATAAAAAGTGCAATTATAGTTAACAAGTTGATAAAATAGGCTGGCACCATCACCAGAGACACGTAGAAACCTGGATTTCTCTCTATGCGAGCCACGAATCTTTGAATTGAACTCAAGCTCGGATTCAATGAATCCTGTTCAGCTACACCGACATATGTCACTTTCCATTCTCCATTTCCCAACTGAGACATTGGTTTTGCCATTGCTTCCATCTCCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTTGAAACTGAACAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGATACAAGCAATTTTTACTCTACA</pcr_primer_p2>
		<pcr_amplicon_size>270</pcr_amplicon_size>
		<canonical_amplicon>TGGTTGAAACTGAACAAAAATTGTTTTCATTTTGCAACAAATATCACGTTTCTAGCTCAATTTTGAAGTGAGTTATAGCCTTATTTGCTTCGAGGGCGCGGTCGGCTGGAGGCGATGAGCGGCGCGCGCGACAGTCAGGCATCACTCCTCACTGTCGCCCGCGCTGCTTGTCGCTTCTTGCTGGCCGCGTCTTCGGCTATGACTCGCTTCAAAATTATGATAGGAGTTCGATTTTTGTCGCAAAATGTAGAGTAAAAATTGCTTGTATCA</canonical_amplicon>
		<polymorphic_amplicon>TGGTTGAAACTGAACAAAAATTGTTTTCATTTTGCAACAAATATCACGTTTCTAGCTCAATTTTGAAGTGAGTTATAGCCTTATTTGCTTCGAGGGCGCGGTCGGCTGGAGGCGATGAGCGGCGCGCGCGACAGTCAGGCATCACTCCTCACTGTCGCCCGCGCTGCTYGTCGCTTCTTGCTGGCCGCGTCTTCGGCTATGACTCGCTTCAAAATTATGATAGGAGTTCGATTTTTGTCGCAAAATGTAGAGTAAAAATTGCTTGTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26919</snp_id>
        <super_contig>c002701367.Contig1</super_contig>
        <contig_pos>9095</contig_pos>
        <strand>+</strand>
        <context>AAGTCATCAA[A/G]CAGYTGGGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACAACAAGACCGAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAA</left_flank>
        <right_flank>CAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTTGCCCCAAACTGCCTTTACTTGCCCCATCTTGCCCCAAATTTGCCATATCTTCTCTCTAACGTGAACTATATTGCCCTTTCCTTGCCCTAACCTTGCCCTTCCTTGTCTAGCTTCAGGTTCATGGTGTACCAGGGTTACTGTAGTCTAGATGAGCCTGGGGGCAAGTTGGACCGATTTTGACCCCGGCTTGCCCTACCTTGTCCGTTCTTGCCCTAACTTGCCCAAGATTTACATAACTTGTCCTAACCTTGCCTTACCTTGTCCCAGCTTGCCCAACCTTACCCAGAACCCTCCAACTTCCTCTATTTTTCAGGTTTCTGGTATGAGTGGATCAAGTACAAGGACCGCATCGAGAAGCTCGACGACAAGCACCAACTCGTCCGCTGTGGAGACTCCTTCCCGATCTTCTGGAAGCGCGCCGAAGGAAATCTCCTCGGATACGTTGACAACAAGACCGAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACATGCAAGGAGAGCCGGTGATGGGACGTGTTTGGAATGAGGGTGGAAAGGTGAGTGTGGGAGATGAGGTCTCATCTTGGCCTAACCTTGCCCAACCCCTTGTCTAAATTAGGTGTGCATGAGGTTGCCCTATATTTGTCCTTGATTGTCCTAGATTGTCCTAGATTGTTCTAACTTGATCTATCTTACAATATTACAGTGTTAGTCTAAATTGTCCTATCTTCCCCAAGCTTGCCCTAAACGTGCCCTATCTTTTCTA</canonical>
            <polymorphic>AGGTTGCCCCAAACTGCCTTTACTTGCCCCATCTTGCCCCAAATTTGCCATATCTTCTCTCTAACGTGAACTATATTGCCCTTTCCTTGCCCTAACCTTGCCCTTCCTTGTCTAGCTTCAGGTTCATGGTGTACCAGGGTTACTGTAGTCTAGATGAGCCTGGGGGCAAGTTGGACCGATTTTGACCCCGGCTTGCCCTACCTTGTCCGTTCTTGCCCTAACTTGCCCAAGATTTACATAACTTGTCCTAACCTTGCCTTACCTTGTCCCAGCTTGCCCAACCTTACCCAGAACCCTCCAACTTCCTCTATTTTTCAGGTTTCTGGTATGAGTGGATCAAGTACAAGGACCGCATCGAGAAGCTCGACGACAAGCACCAACTCGTCCGCTGTGGAGACTCCTTCCCGATCTTCTGGAAGCGCGCCGAAGGAAATCTCCTCGGATACGTTGACAACAAGACCGAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAARCAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACATGCAAGGAGAGCCGGTGATGGGACGTGTTTGGAATGAGGGTGGAAAGGTGAGTGTGGGAGATGAGGTCTCATCTTGGCCTAACCTTGCCCAACCCCTTGTCTAAATTAGGTGTGCATGAGGTTGCCCTATATTTGTCCTTGATTGTCCTAGATTGTCCTAGATTGTTCTAACTTGATCTATCTTACAATATTACAGTGTTAGTCTAAATTGTCCTATCTTCCCCAAGCTTGCCCTAAACGTGCCCTATCTTTTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGAAATCTCCTCGGATAC</pcr_primer_p1>
		<pcr_primer_p2>AATGTCCATCCATTCATCTCT</pcr_primer_p2>
		<pcr_amplicon_size>209</pcr_amplicon_size>
		<canonical_amplicon>AAGGAAATCTCCTCGGATACGTTGACAACAAGACCGAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATT</canonical_amplicon>
		<polymorphic_amplicon>AAGGAAATCTCCTCGGATACGTTGACAACAAGACCGAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAARCAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26920</snp_id>
        <super_contig>c002701367.Contig1</super_contig>
        <contig_pos>9099</contig_pos>
        <strand>+</strand>
        <context>CATCAARCAG[C/T]TGGGACCYCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAAGACCGAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAAACAG</left_flank>
        <right_flank>TGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCCCCAAACTGCCTTTACTTGCCCCATCTTGCCCCAAATTTGCCATATCTTCTCTCTAACGTGAACTATATTGCCCTTTCCTTGCCCTAACCTTGCCCTTCCTTGTCTAGCTTCAGGTTCATGGTGTACCAGGGTTACTGTAGTCTAGATGAGCCTGGGGGCAAGTTGGACCGATTTTGACCCCGGCTTGCCCTACCTTGTCCGTTCTTGCCCTAACTTGCCCAAGATTTACATAACTTGTCCTAACCTTGCCTTACCTTGTCCCAGCTTGCCCAACCTTACCCAGAACCCTCCAACTTCCTCTATTTTTCAGGTTTCTGGTATGAGTGGATCAAGTACAAGGACCGCATCGAGAAGCTCGACGACAAGCACCAACTCGTCCGCTGTGGAGACTCCTTCCCGATCTTCTGGAAGCGCGCCGAAGGAAATCTCCTCGGATACGTTGACAACAAGACCGAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACATGCAAGGAGAGCCGGTGATGGGACGTGTTTGGAATGAGGGTGGAAAGGTGAGTGTGGGAGATGAGGTCTCATCTTGGCCTAACCTTGCCCAACCCCTTGTCTAAATTAGGTGTGCATGAGGTTGCCCTATATTTGTCCTTGATTGTCCTAGATTGTCCTAGATTGTTCTAACTTGATCTATCTTACAATATTACAGTGTTAGTCTAAATTGTCCTATCTTCCCCAAGCTTGCCCTAAACGTGCCCTATCTTTTCTAGTCT</canonical>
            <polymorphic>TGCCCCAAACTGCCTTTACTTGCCCCATCTTGCCCCAAATTTGCCATATCTTCTCTCTAACGTGAACTATATTGCCCTTTCCTTGCCCTAACCTTGCCCTTCCTTGTCTAGCTTCAGGTTCATGGTGTACCAGGGTTACTGTAGTCTAGATGAGCCTGGGGGCAAGTTGGACCGATTTTGACCCCGGCTTGCCCTACCTTGTCCGTTCTTGCCCTAACTTGCCCAAGATTTACATAACTTGTCCTAACCTTGCCTTACCTTGTCCCAGCTTGCCCAACCTTACCCAGAACCCTCCAACTTCCTCTATTTTTCAGGTTTCTGGTATGAGTGGATCAAGTACAAGGACCGCATCGAGAAGCTCGACGACAAGCACCAACTCGTCCGCTGTGGAGACTCCTTCCCGATCTTCTGGAAGCGCGCCGAAGGAAATCTCCTCGGATACGTTGACAACAAGACCGAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAAACAGYTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACATGCAAGGAGAGCCGGTGATGGGACGTGTTTGGAATGAGGGTGGAAAGGTGAGTGTGGGAGATGAGGTCTCATCTTGGCCTAACCTTGCCCAACCCCTTGTCTAAATTAGGTGTGCATGAGGTTGCCCTATATTTGTCCTTGATTGTCCTAGATTGTCCTAGATTGTTCTAACTTGATCTATCTTACAATATTACAGTGTTAGTCTAAATTGTCCTATCTTCCCCAAGCTTGCCCTAAACGTGCCCTATCTTTTCTAGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>303 165 157 111 106 90 35 33</canonical_bands>
                <polymorphic_bands>303 200 157 111 106 90 33</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>150 111 106 90 90 87 81 66 60 43 35 33 33 15</canonical_bands>
                <polymorphic_bands>150 125 111 106 90 87 81 66 60 43 33 33 15</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>384 336 165 115</canonical_bands>
                <polymorphic_bands>384 336 280</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>499 336 165</canonical_bands>
                <polymorphic_bands>664 336</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGAAATCTCCTCGGATAC</pcr_primer_p1>
		<pcr_primer_p2>AATGTCCATCCATTCATCTCT</pcr_primer_p2>
		<pcr_amplicon_size>209</pcr_amplicon_size>
		<canonical_amplicon>AAGGAAATCTCCTCGGATACGTTGACAACAAGACCGAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATT</canonical_amplicon>
		<polymorphic_amplicon>AAGGAAATCTCCTCGGATACGTTGACAACAAGACCGAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAAACAGYTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26921</snp_id>
        <super_contig>c002701367.Contig1</super_contig>
        <contig_pos>9107</contig_pos>
        <strand>+</strand>
        <context>AGYTGGGACC[C/T]CAACTCAAYG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAAACAGCTGGGACC</left_flank>
        <right_flank>CAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTGCCTTTACTTGCCCCATCTTGCCCCAAATTTGCCATATCTTCTCTCTAACGTGAACTATATTGCCCTTTCCTTGCCCTAACCTTGCCCTTCCTTGTCTAGCTTCAGGTTCATGGTGTACCAGGGTTACTGTAGTCTAGATGAGCCTGGGGGCAAGTTGGACCGATTTTGACCCCGGCTTGCCCTACCTTGTCCGTTCTTGCCCTAACTTGCCCAAGATTTACATAACTTGTCCTAACCTTGCCTTACCTTGTCCCAGCTTGCCCAACCTTACCCAGAACCCTCCAACTTCCTCTATTTTTCAGGTTTCTGGTATGAGTGGATCAAGTACAAGGACCGCATCGAGAAGCTCGACGACAAGCACCAACTCGTCCGCTGTGGAGACTCCTTCCCGATCTTCTGGAAGCGCGCCGAAGGAAATCTCCTCGGATACGTTGACAACAAGACCGAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACATGCAAGGAGAGCCGGTGATGGGACGTGTTTGGAATGAGGGTGGAAAGGTGAGTGTGGGAGATGAGGTCTCATCTTGGCCTAACCTTGCCCAACCCCTTGTCTAAATTAGGTGTGCATGAGGTTGCCCTATATTTGTCCTTGATTGTCCTAGATTGTCCTAGATTGTTCTAACTTGATCTATCTTACAATATTACAGTGTTAGTCTAAATTGTCCTATCTTCCCCAAGCTTGCCCTAAACGTGCCCTATCTTTTCTAGTCTTGCTTTAT</canonical>
            <polymorphic>ACTGCCTTTACTTGCCCCATCTTGCCCCAAATTTGCCATATCTTCTCTCTAACGTGAACTATATTGCCCTTTCCTTGCCCTAACCTTGCCCTTCCTTGTCTAGCTTCAGGTTCATGGTGTACCAGGGTTACTGTAGTCTAGATGAGCCTGGGGGCAAGTTGGACCGATTTTGACCCCGGCTTGCCCTACCTTGTCCGTTCTTGCCCTAACTTGCCCAAGATTTACATAACTTGTCCTAACCTTGCCTTACCTTGTCCCAGCTTGCCCAACCTTACCCAGAACCCTCCAACTTCCTCTATTTTTCAGGTTTCTGGTATGAGTGGATCAAGTACAAGGACCGCATCGAGAAGCTCGACGACAAGCACCAACTCGTCCGCTGTGGAGACTCCTTCCCGATCTTCTGGAAGCGCGCCGAAGGAAATCTCCTCGGATACGTTGACAACAAGACCGAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAAACAGCTGGGACCYCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACATGCAAGGAGAGCCGGTGATGGGACGTGTTTGGAATGAGGGTGGAAAGGTGAGTGTGGGAGATGAGGTCTCATCTTGGCCTAACCTTGCCCAACCCCTTGTCTAAATTAGGTGTGCATGAGGTTGCCCTATATTTGTCCTTGATTGTCCTAGATTGTCCTAGATTGTTCTAACTTGATCTATCTTACAATATTACAGTGTTAGTCTAAATTGTCCTATCTTCCCCAAGCTTGCCCTAAACGTGCCCTATCTTTTCTAGTCTTGCTTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGGWCCC</site>
                <isoschizomers>
                    <enzyme>SanDI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGAAATCTCCTCGGATAC</pcr_primer_p1>
		<pcr_primer_p2>AATGTCCATCCATTCATCTCT</pcr_primer_p2>
		<pcr_amplicon_size>209</pcr_amplicon_size>
		<canonical_amplicon>AAGGAAATCTCCTCGGATACGTTGACAACAAGACCGAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATT</canonical_amplicon>
		<polymorphic_amplicon>AAGGAAATCTCCTCGGATACGTTGACAACAAGACCGAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAAACAGCTGGGACCYCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26922</snp_id>
        <super_contig>c002701367.Contig1</super_contig>
        <contig_pos>9116</contig_pos>
        <strand>+</strand>
        <context>CYCAACTCAA[C/T]GACATGTACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGTTCTCGTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAA</left_flank>
        <right_flank>GACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTGCCCCATCTTGCCCCAAATTTGCCATATCTTCTCTCTAACGTGAACTATATTGCCCTTTCCTTGCCCTAACCTTGCCCTTCCTTGTCTAGCTTCAGGTTCATGGTGTACCAGGGTTACTGTAGTCTAGATGAGCCTGGGGGCAAGTTGGACCGATTTTGACCCCGGCTTGCCCTACCTTGTCCGTTCTTGCCCTAACTTGCCCAAGATTTACATAACTTGTCCTAACCTTGCCTTACCTTGTCCCAGCTTGCCCAACCTTACCCAGAACCCTCCAACTTCCTCTATTTTTCAGGTTTCTGGTATGAGTGGATCAAGTACAAGGACCGCATCGAGAAGCTCGACGACAAGCACCAACTCGTCCGCTGTGGAGACTCCTTCCCGATCTTCTGGAAGCGCGCCGAAGGAAATCTCCTCGGATACGTTGACAACAAGACCGAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACATGCAAGGAGAGCCGGTGATGGGACGTGTTTGGAATGAGGGTGGAAAGGTGAGTGTGGGAGATGAGGTCTCATCTTGGCCTAACCTTGCCCAACCCCTTGTCTAAATTAGGTGTGCATGAGGTTGCCCTATATTTGTCCTTGATTGTCCTAGATTGTCCTAGATTGTTCTAACTTGATCTATCTTACAATATTACAGTGTTAGTCTAAATTGTCCTATCTTCCCCAAGCTTGCCCTAAACGTGCCCTATCTTTTCTAGTCTTGCTTTATTTGGCCTAG</canonical>
            <polymorphic>ACTTGCCCCATCTTGCCCCAAATTTGCCATATCTTCTCTCTAACGTGAACTATATTGCCCTTTCCTTGCCCTAACCTTGCCCTTCCTTGTCTAGCTTCAGGTTCATGGTGTACCAGGGTTACTGTAGTCTAGATGAGCCTGGGGGCAAGTTGGACCGATTTTGACCCCGGCTTGCCCTACCTTGTCCGTTCTTGCCCTAACTTGCCCAAGATTTACATAACTTGTCCTAACCTTGCCTTACCTTGTCCCAGCTTGCCCAACCTTACCCAGAACCCTCCAACTTCCTCTATTTTTCAGGTTTCTGGTATGAGTGGATCAAGTACAAGGACCGCATCGAGAAGCTCGACGACAAGCACCAACTCGTCCGCTGTGGAGACTCCTTCCCGATCTTCTGGAAGCGCGCCGAAGGAAATCTCCTCGGATACGTTGACAACAAGACCGAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAAYGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACATGCAAGGAGAGCCGGTGATGGGACGTGTTTGGAATGAGGGTGGAAAGGTGAGTGTGGGAGATGAGGTCTCATCTTGGCCTAACCTTGCCCAACCCCTTGTCTAAATTAGGTGTGCATGAGGTTGCCCTATATTTGTCCTTGATTGTCCTAGATTGTCCTAGATTGTTCTAACTTGATCTATCTTACAATATTACAGTGTTAGTCTAAATTGTCCTATCTTCCCCAAGCTTGCCCTAAACGTGCCCTATCTTTTCTAGTCTTGCTTTATTTGGCCTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGAAATCTCCTCGGATAC</pcr_primer_p1>
		<pcr_primer_p2>AATGTCCATCCATTCATCTCT</pcr_primer_p2>
		<pcr_amplicon_size>209</pcr_amplicon_size>
		<canonical_amplicon>AAGGAAATCTCCTCGGATACGTTGACAACAAGACCGAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATT</canonical_amplicon>
		<polymorphic_amplicon>AAGGAAATCTCCTCGGATACGTTGACAACAAGACCGAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAAYGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26923</snp_id>
        <super_contig>c002701367.Contig1</super_contig>
        <contig_pos>9128</contig_pos>
        <strand>+</strand>
        <context>ACATGTACAT[C/T]ATCACYCGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACAT</left_flank>
        <right_flank>ATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCCCCAAATTTGCCATATCTTCTCTCTAACGTGAACTATATTGCCCTTTCCTTGCCCTAACCTTGCCCTTCCTTGTCTAGCTTCAGGTTCATGGTGTACCAGGGTTACTGTAGTCTAGATGAGCCTGGGGGCAAGTTGGACCGATTTTGACCCCGGCTTGCCCTACCTTGTCCGTTCTTGCCCTAACTTGCCCAAGATTTACATAACTTGTCCTAACCTTGCCTTACCTTGTCCCAGCTTGCCCAACCTTACCCAGAACCCTCCAACTTCCTCTATTTTTCAGGTTTCTGGTATGAGTGGATCAAGTACAAGGACCGCATCGAGAAGCTCGACGACAAGCACCAACTCGTCCGCTGTGGAGACTCCTTCCCGATCTTCTGGAAGCGCGCCGAAGGAAATCTCCTCGGATACGTTGACAACAAGACCGAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACATGCAAGGAGAGCCGGTGATGGGACGTGTTTGGAATGAGGGTGGAAAGGTGAGTGTGGGAGATGAGGTCTCATCTTGGCCTAACCTTGCCCAACCCCTTGTCTAAATTAGGTGTGCATGAGGTTGCCCTATATTTGTCCTTGATTGTCCTAGATTGTCCTAGATTGTTCTAACTTGATCTATCTTACAATATTACAGTGTTAGTCTAAATTGTCCTATCTTCCCCAAGCTTGCCCTAAACGTGCCCTATCTTTTCTAGTCTTGCTTTATTTGGCCTAGATTGTCTTACCT</canonical>
            <polymorphic>TTGCCCCAAATTTGCCATATCTTCTCTCTAACGTGAACTATATTGCCCTTTCCTTGCCCTAACCTTGCCCTTCCTTGTCTAGCTTCAGGTTCATGGTGTACCAGGGTTACTGTAGTCTAGATGAGCCTGGGGGCAAGTTGGACCGATTTTGACCCCGGCTTGCCCTACCTTGTCCGTTCTTGCCCTAACTTGCCCAAGATTTACATAACTTGTCCTAACCTTGCCTTACCTTGTCCCAGCTTGCCCAACCTTACCCAGAACCCTCCAACTTCCTCTATTTTTCAGGTTTCTGGTATGAGTGGATCAAGTACAAGGACCGCATCGAGAAGCTCGACGACAAGCACCAACTCGTCCGCTGTGGAGACTCCTTCCCGATCTTCTGGAAGCGCGCCGAAGGAAATCTCCTCGGATACGTTGACAACAAGACCGAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATYATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACATGCAAGGAGAGCCGGTGATGGGACGTGTTTGGAATGAGGGTGGAAAGGTGAGTGTGGGAGATGAGGTCTCATCTTGGCCTAACCTTGCCCAACCCCTTGTCTAAATTAGGTGTGCATGAGGTTGCCCTATATTTGTCCTTGATTGTCCTAGATTGTCCTAGATTGTTCTAACTTGATCTATCTTACAATATTACAGTGTTAGTCTAAATTGTCCTATCTTCCCCAAGCTTGCCCTAAACGTGCCCTATCTTTTCTAGTCTTGCTTTATTTGGCCTAGATTGTCTTACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCAACGGAAAAGTCATCA</pcr_primer_p1>
		<pcr_primer_p2>TGTACCAAAGTGCGACATATT</pcr_primer_p2>
		<pcr_amplicon_size>266</pcr_amplicon_size>
		<canonical_amplicon>GTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACA</canonical_amplicon>
		<polymorphic_amplicon>GTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATYATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26924</snp_id>
        <super_contig>c002701367.Contig1</super_contig>
        <contig_pos>9134</contig_pos>
        <strand>+</strand>
        <context>ACATYATCAC[C/T]CGTAAYTGCR</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCAC</left_flank>
        <right_flank>CGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATTTGCCATATCTTCTCTCTAACGTGAACTATATTGCCCTTTCCTTGCCCTAACCTTGCCCTTCCTTGTCTAGCTTCAGGTTCATGGTGTACCAGGGTTACTGTAGTCTAGATGAGCCTGGGGGCAAGTTGGACCGATTTTGACCCCGGCTTGCCCTACCTTGTCCGTTCTTGCCCTAACTTGCCCAAGATTTACATAACTTGTCCTAACCTTGCCTTACCTTGTCCCAGCTTGCCCAACCTTACCCAGAACCCTCCAACTTCCTCTATTTTTCAGGTTTCTGGTATGAGTGGATCAAGTACAAGGACCGCATCGAGAAGCTCGACGACAAGCACCAACTCGTCCGCTGTGGAGACTCCTTCCCGATCTTCTGGAAGCGCGCCGAAGGAAATCTCCTCGGATACGTTGACAACAAGACCGAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACATGCAAGGAGAGCCGGTGATGGGACGTGTTTGGAATGAGGGTGGAAAGGTGAGTGTGGGAGATGAGGTCTCATCTTGGCCTAACCTTGCCCAACCCCTTGTCTAAATTAGGTGTGCATGAGGTTGCCCTATATTTGTCCTTGATTGTCCTAGATTGTCCTAGATTGTTCTAACTTGATCTATCTTACAATATTACAGTGTTAGTCTAAATTGTCCTATCTTCCCCAAGCTTGCCCTAAACGTGCCCTATCTTTTCTAGTCTTGCTTTATTTGGCCTAGATTGTCTTACCTTTTCTC</canonical>
            <polymorphic>CAAATTTGCCATATCTTCTCTCTAACGTGAACTATATTGCCCTTTCCTTGCCCTAACCTTGCCCTTCCTTGTCTAGCTTCAGGTTCATGGTGTACCAGGGTTACTGTAGTCTAGATGAGCCTGGGGGCAAGTTGGACCGATTTTGACCCCGGCTTGCCCTACCTTGTCCGTTCTTGCCCTAACTTGCCCAAGATTTACATAACTTGTCCTAACCTTGCCTTACCTTGTCCCAGCTTGCCCAACCTTACCCAGAACCCTCCAACTTCCTCTATTTTTCAGGTTTCTGGTATGAGTGGATCAAGTACAAGGACCGCATCGAGAAGCTCGACGACAAGCACCAACTCGTCCGCTGTGGAGACTCCTTCCCGATCTTCTGGAAGCGCGCCGAAGGAAATCTCCTCGGATACGTTGACAACAAGACCGAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACYCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACATGCAAGGAGAGCCGGTGATGGGACGTGTTTGGAATGAGGGTGGAAAGGTGAGTGTGGGAGATGAGGTCTCATCTTGGCCTAACCTTGCCCAACCCCTTGTCTAAATTAGGTGTGCATGAGGTTGCCCTATATTTGTCCTTGATTGTCCTAGATTGTCCTAGATTGTTCTAACTTGATCTATCTTACAATATTACAGTGTTAGTCTAAATTGTCCTATCTTCCCCAAGCTTGCCCTAAACGTGCCCTATCTTTTCTAGTCTTGCTTTATTTGGCCTAGATTGTCTTACCTTTTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCAACGGAAAAGTCATCA</pcr_primer_p1>
		<pcr_primer_p2>TGTACCAAAGTGCGACATATT</pcr_primer_p2>
		<pcr_amplicon_size>266</pcr_amplicon_size>
		<canonical_amplicon>GTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACA</canonical_amplicon>
		<polymorphic_amplicon>GTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACYCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26925</snp_id>
        <super_contig>c002701367.Contig1</super_contig>
        <contig_pos>9140</contig_pos>
        <strand>+</strand>
        <context>TCACYCGTAA[C/T]TGCRTYGGWG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAA</left_flank>
        <right_flank>TGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCCATATCTTCTCTCTAACGTGAACTATATTGCCCTTTCCTTGCCCTAACCTTGCCCTTCCTTGTCTAGCTTCAGGTTCATGGTGTACCAGGGTTACTGTAGTCTAGATGAGCCTGGGGGCAAGTTGGACCGATTTTGACCCCGGCTTGCCCTACCTTGTCCGTTCTTGCCCTAACTTGCCCAAGATTTACATAACTTGTCCTAACCTTGCCTTACCTTGTCCCAGCTTGCCCAACCTTACCCAGAACCCTCCAACTTCCTCTATTTTTCAGGTTTCTGGTATGAGTGGATCAAGTACAAGGACCGCATCGAGAAGCTCGACGACAAGCACCAACTCGTCCGCTGTGGAGACTCCTTCCCGATCTTCTGGAAGCGCGCCGAAGGAAATCTCCTCGGATACGTTGACAACAAGACCGAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACATGCAAGGAGAGCCGGTGATGGGACGTGTTTGGAATGAGGGTGGAAAGGTGAGTGTGGGAGATGAGGTCTCATCTTGGCCTAACCTTGCCCAACCCCTTGTCTAAATTAGGTGTGCATGAGGTTGCCCTATATTTGTCCTTGATTGTCCTAGATTGTCCTAGATTGTTCTAACTTGATCTATCTTACAATATTACAGTGTTAGTCTAAATTGTCCTATCTTCCCCAAGCTTGCCCTAAACGTGCCCTATCTTTTCTAGTCTTGCTTTATTTGGCCTAGATTGTCTTACCTTTTCTCAACTTT</canonical>
            <polymorphic>TGCCATATCTTCTCTCTAACGTGAACTATATTGCCCTTTCCTTGCCCTAACCTTGCCCTTCCTTGTCTAGCTTCAGGTTCATGGTGTACCAGGGTTACTGTAGTCTAGATGAGCCTGGGGGCAAGTTGGACCGATTTTGACCCCGGCTTGCCCTACCTTGTCCGTTCTTGCCCTAACTTGCCCAAGATTTACATAACTTGTCCTAACCTTGCCTTACCTTGTCCCAGCTTGCCCAACCTTACCCAGAACCCTCCAACTTCCTCTATTTTTCAGGTTTCTGGTATGAGTGGATCAAGTACAAGGACCGCATCGAGAAGCTCGACGACAAGCACCAACTCGTCCGCTGTGGAGACTCCTTCCCGATCTTCTGGAAGCGCGCCGAAGGAAATCTCCTCGGATACGTTGACAACAAGACCGAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAAYTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACATGCAAGGAGAGCCGGTGATGGGACGTGTTTGGAATGAGGGTGGAAAGGTGAGTGTGGGAGATGAGGTCTCATCTTGGCCTAACCTTGCCCAACCCCTTGTCTAAATTAGGTGTGCATGAGGTTGCCCTATATTTGTCCTTGATTGTCCTAGATTGTCCTAGATTGTTCTAACTTGATCTATCTTACAATATTACAGTGTTAGTCTAAATTGTCCTATCTTCCCCAAGCTTGCCCTAAACGTGCCCTATCTTTTCTAGTCTTGCTTTATTTGGCCTAGATTGTCTTACCTTTTCTCAACTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 402 93</canonical_bands>
                <polymorphic_bands>907 93</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCAACGGAAAAGTCATCA</pcr_primer_p1>
		<pcr_primer_p2>TGTACCAAAGTGCGACATATT</pcr_primer_p2>
		<pcr_amplicon_size>266</pcr_amplicon_size>
		<canonical_amplicon>GTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACA</canonical_amplicon>
		<polymorphic_amplicon>GTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAAYTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26926</snp_id>
        <super_contig>c002701367.Contig1</super_contig>
        <contig_pos>9144</contig_pos>
        <strand>+</strand>
        <context>YCGTAAYTGC[A/G]TYGGWGGACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGC</left_flank>
        <right_flank>TCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATCTTCTCTCTAACGTGAACTATATTGCCCTTTCCTTGCCCTAACCTTGCCCTTCCTTGTCTAGCTTCAGGTTCATGGTGTACCAGGGTTACTGTAGTCTAGATGAGCCTGGGGGCAAGTTGGACCGATTTTGACCCCGGCTTGCCCTACCTTGTCCGTTCTTGCCCTAACTTGCCCAAGATTTACATAACTTGTCCTAACCTTGCCTTACCTTGTCCCAGCTTGCCCAACCTTACCCAGAACCCTCCAACTTCCTCTATTTTTCAGGTTTCTGGTATGAGTGGATCAAGTACAAGGACCGCATCGAGAAGCTCGACGACAAGCACCAACTCGTCCGCTGTGGAGACTCCTTCCCGATCTTCTGGAAGCGCGCCGAAGGAAATCTCCTCGGATACGTTGACAACAAGACCGAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACATGCAAGGAGAGCCGGTGATGGGACGTGTTTGGAATGAGGGTGGAAAGGTGAGTGTGGGAGATGAGGTCTCATCTTGGCCTAACCTTGCCCAACCCCTTGTCTAAATTAGGTGTGCATGAGGTTGCCCTATATTTGTCCTTGATTGTCCTAGATTGTCCTAGATTGTTCTAACTTGATCTATCTTACAATATTACAGTGTTAGTCTAAATTGTCCTATCTTCCCCAAGCTTGCCCTAAACGTGCCCTATCTTTTCTAGTCTTGCTTTATTTGGCCTAGATTGTCTTACCTTTTCTCAACTTTTCCT</canonical>
            <polymorphic>ATATCTTCTCTCTAACGTGAACTATATTGCCCTTTCCTTGCCCTAACCTTGCCCTTCCTTGTCTAGCTTCAGGTTCATGGTGTACCAGGGTTACTGTAGTCTAGATGAGCCTGGGGGCAAGTTGGACCGATTTTGACCCCGGCTTGCCCTACCTTGTCCGTTCTTGCCCTAACTTGCCCAAGATTTACATAACTTGTCCTAACCTTGCCTTACCTTGTCCCAGCTTGCCCAACCTTACCCAGAACCCTCCAACTTCCTCTATTTTTCAGGTTTCTGGTATGAGTGGATCAAGTACAAGGACCGCATCGAGAAGCTCGACGACAAGCACCAACTCGTCCGCTGTGGAGACTCCTTCCCGATCTTCTGGAAGCGCGCCGAAGGAAATCTCCTCGGATACGTTGACAACAAGACCGAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCRTCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACATGCAAGGAGAGCCGGTGATGGGACGTGTTTGGAATGAGGGTGGAAAGGTGAGTGTGGGAGATGAGGTCTCATCTTGGCCTAACCTTGCCCAACCCCTTGTCTAAATTAGGTGTGCATGAGGTTGCCCTATATTTGTCCTTGATTGTCCTAGATTGTCCTAGATTGTTCTAACTTGATCTATCTTACAATATTACAGTGTTAGTCTAAATTGTCCTATCTTCCCCAAGCTTGCCCTAAACGTGCCCTATCTTTTCTAGTCTTGCTTTATTTGGCCTAGATTGTCTTACCTTTTCTCAACTTTTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>498 199 191 112</canonical_bands>
                <polymorphic_bands>697 191 112</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCAACGGAAAAGTCATCA</pcr_primer_p1>
		<pcr_primer_p2>TGTACCAAAGTGCGACATATT</pcr_primer_p2>
		<pcr_amplicon_size>266</pcr_amplicon_size>
		<canonical_amplicon>GTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACA</canonical_amplicon>
		<polymorphic_amplicon>GTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCRTCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26927</snp_id>
        <super_contig>c002701367.Contig1</super_contig>
        <contig_pos>9146</contig_pos>
        <strand>+</strand>
        <context>GTAAYTGCRT[C/T]GGWGGACCGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCAT</left_flank>
        <right_flank>GGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTTCTCTCTAACGTGAACTATATTGCCCTTTCCTTGCCCTAACCTTGCCCTTCCTTGTCTAGCTTCAGGTTCATGGTGTACCAGGGTTACTGTAGTCTAGATGAGCCTGGGGGCAAGTTGGACCGATTTTGACCCCGGCTTGCCCTACCTTGTCCGTTCTTGCCCTAACTTGCCCAAGATTTACATAACTTGTCCTAACCTTGCCTTACCTTGTCCCAGCTTGCCCAACCTTACCCAGAACCCTCCAACTTCCTCTATTTTTCAGGTTTCTGGTATGAGTGGATCAAGTACAAGGACCGCATCGAGAAGCTCGACGACAAGCACCAACTCGTCCGCTGTGGAGACTCCTTCCCGATCTTCTGGAAGCGCGCCGAAGGAAATCTCCTCGGATACGTTGACAACAAGACCGAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACATGCAAGGAGAGCCGGTGATGGGACGTGTTTGGAATGAGGGTGGAAAGGTGAGTGTGGGAGATGAGGTCTCATCTTGGCCTAACCTTGCCCAACCCCTTGTCTAAATTAGGTGTGCATGAGGTTGCCCTATATTTGTCCTTGATTGTCCTAGATTGTCCTAGATTGTTCTAACTTGATCTATCTTACAATATTACAGTGTTAGTCTAAATTGTCCTATCTTCCCCAAGCTTGCCCTAAACGTGCCCTATCTTTTCTAGTCTTGCTTTATTTGGCCTAGATTGTCTTACCTTTTCTCAACTTTTCCTAC</canonical>
            <polymorphic>ATCTTCTCTCTAACGTGAACTATATTGCCCTTTCCTTGCCCTAACCTTGCCCTTCCTTGTCTAGCTTCAGGTTCATGGTGTACCAGGGTTACTGTAGTCTAGATGAGCCTGGGGGCAAGTTGGACCGATTTTGACCCCGGCTTGCCCTACCTTGTCCGTTCTTGCCCTAACTTGCCCAAGATTTACATAACTTGTCCTAACCTTGCCTTACCTTGTCCCAGCTTGCCCAACCTTACCCAGAACCCTCCAACTTCCTCTATTTTTCAGGTTTCTGGTATGAGTGGATCAAGTACAAGGACCGCATCGAGAAGCTCGACGACAAGCACCAACTCGTCCGCTGTGGAGACTCCTTCCCGATCTTCTGGAAGCGCGCCGAAGGAAATCTCCTCGGATACGTTGACAACAAGACCGAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATYGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACATGCAAGGAGAGCCGGTGATGGGACGTGTTTGGAATGAGGGTGGAAAGGTGAGTGTGGGAGATGAGGTCTCATCTTGGCCTAACCTTGCCCAACCCCTTGTCTAAATTAGGTGTGCATGAGGTTGCCCTATATTTGTCCTTGATTGTCCTAGATTGTCCTAGATTGTTCTAACTTGATCTATCTTACAATATTACAGTGTTAGTCTAAATTGTCCTATCTTCCCCAAGCTTGCCCTAAACGTGCCCTATCTTTTCTAGTCTTGCTTTATTTGGCCTAGATTGTCTTACCTTTTCTCAACTTTTCCTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCAACGGAAAAGTCATCA</pcr_primer_p1>
		<pcr_primer_p2>TGTACCAAAGTGCGACATATT</pcr_primer_p2>
		<pcr_amplicon_size>266</pcr_amplicon_size>
		<canonical_amplicon>GTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACA</canonical_amplicon>
		<polymorphic_amplicon>GTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATYGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26928</snp_id>
        <super_contig>c002701367.Contig1</super_contig>
        <contig_pos>9149</contig_pos>
        <strand>+</strand>
        <context>AYTGCRTYGG[A/T]GGACCGCCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGG</left_flank>
        <right_flank>GGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACC</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTCTCTAACGTGAACTATATTGCCCTTTCCTTGCCCTAACCTTGCCCTTCCTTGTCTAGCTTCAGGTTCATGGTGTACCAGGGTTACTGTAGTCTAGATGAGCCTGGGGGCAAGTTGGACCGATTTTGACCCCGGCTTGCCCTACCTTGTCCGTTCTTGCCCTAACTTGCCCAAGATTTACATAACTTGTCCTAACCTTGCCTTACCTTGTCCCAGCTTGCCCAACCTTACCCAGAACCCTCCAACTTCCTCTATTTTTCAGGTTTCTGGTATGAGTGGATCAAGTACAAGGACCGCATCGAGAAGCTCGACGACAAGCACCAACTCGTCCGCTGTGGAGACTCCTTCCCGATCTTCTGGAAGCGCGCCGAAGGAAATCTCCTCGGATACGTTGACAACAAGACCGAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACATGCAAGGAGAGCCGGTGATGGGACGTGTTTGGAATGAGGGTGGAAAGGTGAGTGTGGGAGATGAGGTCTCATCTTGGCCTAACCTTGCCCAACCCCTTGTCTAAATTAGGTGTGCATGAGGTTGCCCTATATTTGTCCTTGATTGTCCTAGATTGTCCTAGATTGTTCTAACTTGATCTATCTTACAATATTACAGTGTTAGTCTAAATTGTCCTATCTTCCCCAAGCTTGCCCTAAACGTGCCCTATCTTTTCTAGTCTTGCTTTATTTGGCCTAGATTGTCTTACCTTTTCTCAACTTTTCCTACTTG</canonical>
            <polymorphic>TTCTCTCTAACGTGAACTATATTGCCCTTTCCTTGCCCTAACCTTGCCCTTCCTTGTCTAGCTTCAGGTTCATGGTGTACCAGGGTTACTGTAGTCTAGATGAGCCTGGGGGCAAGTTGGACCGATTTTGACCCCGGCTTGCCCTACCTTGTCCGTTCTTGCCCTAACTTGCCCAAGATTTACATAACTTGTCCTAACCTTGCCTTACCTTGTCCCAGCTTGCCCAACCTTACCCAGAACCCTCCAACTTCCTCTATTTTTCAGGTTTCTGGTATGAGTGGATCAAGTACAAGGACCGCATCGAGAAGCTCGACGACAAGCACCAACTCGTCCGCTGTGGAGACTCCTTCCCGATCTTCTGGAAGCGCGCCGAAGGAAATCTCCTCGGATACGTTGACAACAAGACCGAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGWGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACATGCAAGGAGAGCCGGTGATGGGACGTGTTTGGAATGAGGGTGGAAAGGTGAGTGTGGGAGATGAGGTCTCATCTTGGCCTAACCTTGCCCAACCCCTTGTCTAAATTAGGTGTGCATGAGGTTGCCCTATATTTGTCCTTGATTGTCCTAGATTGTCCTAGATTGTTCTAACTTGATCTATCTTACAATATTACAGTGTTAGTCTAAATTGTCCTATCTTCCCCAAGCTTGCCCTAAACGTGCCCTATCTTTTCTAGTCTTGCTTTATTTGGCCTAGATTGTCTTACCTTTTCTCAACTTTTCCTACTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>203 144 84 68 63 56 44 42 39 30 27 25 23 21 18 17 15 14 14 12 11 10 8 4 4 2 2</canonical_bands>
                <polymorphic_bands>203 144 84 68 63 56 48 44 42 39 27 25 23 21 17 15 14 14 12 11 10 8 4 4 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>454 318 106 63 45 14</canonical_bands>
                <polymorphic_bands>454 318 151 63 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCAACGGAAAAGTCATCA</pcr_primer_p1>
		<pcr_primer_p2>TGTACCAAAGTGCGACATATT</pcr_primer_p2>
		<pcr_amplicon_size>266</pcr_amplicon_size>
		<canonical_amplicon>GTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACA</canonical_amplicon>
		<polymorphic_amplicon>GTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGWGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26929</snp_id>
        <super_contig>c002701367.Contig1</super_contig>
        <contig_pos>9208</contig_pos>
        <strand>+</strand>
        <context>CCGAAGGTTG[A/T]GAGAGATGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTG</left_flank>
        <right_flank>GAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTTCAGGTTCATGGTGTACCAGGGTTACTGTAGTCTAGATGAGCCTGGGGGCAAGTTGGACCGATTTTGACCCCGGCTTGCCCTACCTTGTCCGTTCTTGCCCTAACTTGCCCAAGATTTACATAACTTGTCCTAACCTTGCCTTACCTTGTCCCAGCTTGCCCAACCTTACCCAGAACCCTCCAACTTCCTCTATTTTTCAGGTTTCTGGTATGAGTGGATCAAGTACAAGGACCGCATCGAGAAGCTCGACGACAAGCACCAACTCGTCCGCTGTGGAGACTCCTTCCCGATCTTCTGGAAGCGCGCCGAAGGAAATCTCCTCGGATACGTTGACAACAAGACCGAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACATGCAAGGAGAGCCGGTGATGGGACGTGTTTGGAATGAGGGTGGAAAGGTGAGTGTGGGAGATGAGGTCTCATCTTGGCCTAACCTTGCCCAACCCCTTGTCTAAATTAGGTGTGCATGAGGTTGCCCTATATTTGTCCTTGATTGTCCTAGATTGTCCTAGATTGTTCTAACTTGATCTATCTTACAATATTACAGTGTTAGTCTAAATTGTCCTATCTTCCCCAAGCTTGCCCTAAACGTGCCCTATCTTTTCTAGTCTTGCTTTATTTGGCCTAGATTGTCTTACCTTTTCTCAACTTTTCCTACTTGCCCAATGTGTCCTAACTTGCCCTATGTTAGCCTAGATTGCTCTATCTTGTCTCTTGATT</canonical>
            <polymorphic>AGCTTCAGGTTCATGGTGTACCAGGGTTACTGTAGTCTAGATGAGCCTGGGGGCAAGTTGGACCGATTTTGACCCCGGCTTGCCCTACCTTGTCCGTTCTTGCCCTAACTTGCCCAAGATTTACATAACTTGTCCTAACCTTGCCTTACCTTGTCCCAGCTTGCCCAACCTTACCCAGAACCCTCCAACTTCCTCTATTTTTCAGGTTTCTGGTATGAGTGGATCAAGTACAAGGACCGCATCGAGAAGCTCGACGACAAGCACCAACTCGTCCGCTGTGGAGACTCCTTCCCGATCTTCTGGAAGCGCGCCGAAGGAAATCTCCTCGGATACGTTGACAACAAGACCGAGGAAGCTTGGTTCTCGTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGWGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACATGCAAGGAGAGCCGGTGATGGGACGTGTTTGGAATGAGGGTGGAAAGGTGAGTGTGGGAGATGAGGTCTCATCTTGGCCTAACCTTGCCCAACCCCTTGTCTAAATTAGGTGTGCATGAGGTTGCCCTATATTTGTCCTTGATTGTCCTAGATTGTCCTAGATTGTTCTAACTTGATCTATCTTACAATATTACAGTGTTAGTCTAAATTGTCCTATCTTCCCCAAGCTTGCCCTAAACGTGCCCTATCTTTTCTAGTCTTGCTTTATTTGGCCTAGATTGTCTTACCTTTTCTCAACTTTTCCTACTTGCCCAATGTGTCCTAACTTGCCCTATGTTAGCCTAGATTGCTCTATCTTGTCTCTTGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>203 144 84 77 56 50 44 42 39 30 27 25 23 21 18 18 17 15 14 12 11 10 8 4 4 2 2</canonical_bands>
                <polymorphic_bands>203 144 84 77 56 50 44 42 39 39 30 27 23 21 18 18 17 15 12 11 10 8 4 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCAACGGAAAAGTCATCA</pcr_primer_p1>
		<pcr_primer_p2>TGTACCAAAGTGCGACATATT</pcr_primer_p2>
		<pcr_amplicon_size>266</pcr_amplicon_size>
		<canonical_amplicon>GTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGTGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACA</canonical_amplicon>
		<polymorphic_amplicon>GTTCAACGGAAAAGTCATCAAACAGCTGGGACCCCAACTCAATGACATGTACATTATCACCCGTAACTGCATCGGTGGACCGCCAAGTTGTACTTGCGCCGCCTGTGGAGGACAGCCACGTGGACCGAAGGTTGWGAGAGATGAATGGATGGACATTCGTGAGGGAGACGCTTGGCCAACCAACAAGCAGCTGGTTCGTGCGTTGGACAAGTCGCTGGACACGTTGCCGGGTGTCGCTGCCGATCAATATGTCGCACTTTGGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26930</snp_id>
        <super_contig>c002701367.Contig1</super_contig>
        <contig_pos>10520</contig_pos>
        <strand>+</strand>
        <context>CGGATGATTT[G/T]ATTCGCTTCY</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAAAGAAGAGAGAAGCGACGCGAAAACACACGAAAAAGGACGGATGATTT</left_flank>
        <right_flank>ATTCGCTTCTTTTTGTTTTTTTTTAATGAGAAGAATGAAAGATACTATTG</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCAATCTGTCCGATACCGCCTTGGTTTGCCGCAACTTGTCCCAACTTGCCCTAAACTTGCCCAACCCTCATTTTCATCCTTCCAGATTGCTGCCAACTTCTCCTGGTTCAACAACGAATACTGCAAGAATGTCGGATCCATCCAACTCCTCGTCCACCTTCCAGACACTGTTCGTGGCTACGACTACGGTTGGATTCCATTCCCAGAGGCTGCCAAGTTCGGAGACAAGGAATGGCACCCGGTCCATGTCAACAACCACAAGGGAGACATCTCTGTCGGAGTCGTCAACGTCGCCGGAGGAAAACAGATACTCGCCAAGGTCGACGTCCGTAACGAGTCGTACGGATATGGTTACCAAGGAAAGGAGGTGTCTGCTCGTGGACCGGCTTGCGCTTCCAGCACCATTGTTCTCTGCCGTAAGGCCAAACCAGGACACAAGTTGGACGGATAAAGAAGAGAGAAGCGACGCGAAAACACACGAAAAAGGACGGATGATTTTATTCGCTTCTTTTTGTTTTTTTTTAATGAGAAGAATGAAAGATACTATTGAACTTGTGCTGATGTTTATTTTTTGTCTGTATCTCTATGGGTTTTCAAGATATTCAAATTATGTAAACTACAAAAATTAAGTTTATCAAATTTTACATATTTTCATAGTTGGCTACTTTTGATATCTTTTTTAGTTTTCGAGATATATCTTTAAAGTTTGGCGCCGAAACGCAGAGAGCCACGAACGTCTAGATGTCTGCGCTCTCTTCAAACGCCTGTATCTCGTCTAGTTTTAAAGATTTTTAAATTTTGTAAACCGCGAAAATAAAGCTTGTAAATTTTCAGACAATTTGTCAGTTGACAACTTTTAAAAAGAAATTTGGTTCTTGAGATATGCGTCTTTGAAGTTAGGCGCCGGACAGCAGTGAACCAGCAGTCTCTAGATGTCTGCGCTCTCTTCAAATGCCCGTATCTCTGCTAGTTTTGAAGATGTTCAAATTTTGTTAACTA</canonical>
            <polymorphic>CCCAATCTGTCCGATACCGCCTTGGTTTGCCGCAACTTGTCCCAACTTGCCCTAAACTTGCCCAACCCTCATTTTCATCCTTCCAGATTGCTGCCAACTTCTCCTGGTTCAACAACGAATACTGCAAGAATGTCGGATCCATCCAACTCCTCGTCCACCTTCCAGACACTGTTCGTGGCTACGACTACGGTTGGATTCCATTCCCAGAGGCTGCCAAGTTCGGAGACAAGGAATGGCACCCGGTCCATGTCAACAACCACAAGGGAGACATCTCTGTCGGAGTCGTCAACGTCGCCGGAGGAAAACAGATACTCGCCAAGGTCGACGTCCGTAACGAGTCGTACGGATATGGTTACCAAGGAAAGGAGGTGTCTGCTCGTGGACCGGCTTGCGCTTCCAGCACCATTGTTCTCTGCCGTAAGGCCAAACCAGGACACAAGTTGGACGGATAAAGAAGAGAGAAGCGACGCGAAAACACACGAAAAAGGACGGATGATTTKATTCGCTTCTTTTTGTTTTTTTTTAATGAGAAGAATGAAAGATACTATTGAACTTGTGCTGATGTTTATTTTTTGTCTGTATCTCTATGGGTTTTCAAGATATTCAAATTATGTAAACTACAAAAATTAAGTTTATCAAATTTTACATATTTTCATAGTTGGCTACTTTTGATATCTTTTTTAGTTTTCGAGATATATCTTTAAAGTTTGGCGCCGAAACGCAGAGAGCCACGAACGTCTAGATGTCTGCGCTCTCTTCAAACGCCTGTATCTCGTCTAGTTTTAAAGATTTTTAAATTTTGTAAACCGCGAAAATAAAGCTTGTAAATTTTCAGACAATTTGTCAGTTGACAACTTTTAAAAAGAAATTTGGTTCTTGAGATATGCGTCTTTGAAGTTAGGCGCCGGACAGCAGTGAACCAGCAGTCTCTAGATGTCTGCGCTCTCTTCAAATGCCCGTATCTCTGCTAGTTTTGAAGATGTTCAAATTTTGTTAACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACCAAGGAAAGGAGGTGT</pcr_primer_p1>
		<pcr_primer_p2>TGAATATCTTGAAAACCCATAGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTACCAAGGAAAGGAGGTGTCTGCTCGTGGACCGGCTTGCGCTTCCAGCACCATTGTTCTCTGCCGTAAGGCCAAACCAGGACACAAGTTGGACGGATAAAGAAGAGAGAAGCGACGCGAAAACACACGAAAAAGGACGGATGATTTTATTCGCTTCTTTTTGTTTTTTTTTAATGAGAAGAATGAAAGATACTATTGAACTTGTGCTGATGTTTATTTTTTGTCTGTATCTCTATGGGTTTTCAAGATATTCA</canonical_amplicon>
		<polymorphic_amplicon>TTACCAAGGAAAGGAGGTGTCTGCTCGTGGACCGGCTTGCGCTTCCAGCACCATTGTTCTCTGCCGTAAGGCCAAACCAGGACACAAGTTGGACGGATAAAGAAGAGAGAAGCGACGCGAAAACACACGAAAAAGGACGGATGATTTKATTCGCTTCTTTTTGTTTTTTTTTAATGAGAAGAATGAAAGATACTATTGAACTTGTGCTGATGTTTATTTTTTGTCTGTATCTCTATGGGTTTTCAAGATATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26931</snp_id>
        <super_contig>c002701367.Contig1</super_contig>
        <contig_pos>10530</contig_pos>
        <strand>+</strand>
        <context>KATTCGCTTC[C/T]TTTTGTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAGCGACGCGAAAACACACGAAAAAGGACGGATGATTTTATTCGCTTC</left_flank>
        <right_flank>TTTTGTTTTTTTTTAATGAGAAGAATGAAAGATACTATTGAACTTGTGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGATACCGCCTTGGTTTGCCGCAACTTGTCCCAACTTGCCCTAAACTTGCCCAACCCTCATTTTCATCCTTCCAGATTGCTGCCAACTTCTCCTGGTTCAACAACGAATACTGCAAGAATGTCGGATCCATCCAACTCCTCGTCCACCTTCCAGACACTGTTCGTGGCTACGACTACGGTTGGATTCCATTCCCAGAGGCTGCCAAGTTCGGAGACAAGGAATGGCACCCGGTCCATGTCAACAACCACAAGGGAGACATCTCTGTCGGAGTCGTCAACGTCGCCGGAGGAAAACAGATACTCGCCAAGGTCGACGTCCGTAACGAGTCGTACGGATATGGTTACCAAGGAAAGGAGGTGTCTGCTCGTGGACCGGCTTGCGCTTCCAGCACCATTGTTCTCTGCCGTAAGGCCAAACCAGGACACAAGTTGGACGGATAAAGAAGAGAGAAGCGACGCGAAAACACACGAAAAAGGACGGATGATTTTATTCGCTTCTTTTTGTTTTTTTTTAATGAGAAGAATGAAAGATACTATTGAACTTGTGCTGATGTTTATTTTTTGTCTGTATCTCTATGGGTTTTCAAGATATTCAAATTATGTAAACTACAAAAATTAAGTTTATCAAATTTTACATATTTTCATAGTTGGCTACTTTTGATATCTTTTTTAGTTTTCGAGATATATCTTTAAAGTTTGGCGCCGAAACGCAGAGAGCCACGAACGTCTAGATGTCTGCGCTCTCTTCAAACGCCTGTATCTCGTCTAGTTTTAAAGATTTTTAAATTTTGTAAACCGCGAAAATAAAGCTTGTAAATTTTCAGACAATTTGTCAGTTGACAACTTTTAAAAAGAAATTTGGTTCTTGAGATATGCGTCTTTGAAGTTAGGCGCCGGACAGCAGTGAACCAGCAGTCTCTAGATGTCTGCGCTCTCTTCAAATGCCCGTATCTCTGCTAGTTTTGAAGATGTTCAAATTTTGTTAACTACAAAAATGAA</canonical>
            <polymorphic>CCGATACCGCCTTGGTTTGCCGCAACTTGTCCCAACTTGCCCTAAACTTGCCCAACCCTCATTTTCATCCTTCCAGATTGCTGCCAACTTCTCCTGGTTCAACAACGAATACTGCAAGAATGTCGGATCCATCCAACTCCTCGTCCACCTTCCAGACACTGTTCGTGGCTACGACTACGGTTGGATTCCATTCCCAGAGGCTGCCAAGTTCGGAGACAAGGAATGGCACCCGGTCCATGTCAACAACCACAAGGGAGACATCTCTGTCGGAGTCGTCAACGTCGCCGGAGGAAAACAGATACTCGCCAAGGTCGACGTCCGTAACGAGTCGTACGGATATGGTTACCAAGGAAAGGAGGTGTCTGCTCGTGGACCGGCTTGCGCTTCCAGCACCATTGTTCTCTGCCGTAAGGCCAAACCAGGACACAAGTTGGACGGATAAAGAAGAGAGAAGCGACGCGAAAACACACGAAAAAGGACGGATGATTTTATTCGCTTCYTTTTGTTTTTTTTTAATGAGAAGAATGAAAGATACTATTGAACTTGTGCTGATGTTTATTTTTTGTCTGTATCTCTATGGGTTTTCAAGATATTCAAATTATGTAAACTACAAAAATTAAGTTTATCAAATTTTACATATTTTCATAGTTGGCTACTTTTGATATCTTTTTTAGTTTTCGAGATATATCTTTAAAGTTTGGCGCCGAAACGCAGAGAGCCACGAACGTCTAGATGTCTGCGCTCTCTTCAAACGCCTGTATCTCGTCTAGTTTTAAAGATTTTTAAATTTTGTAAACCGCGAAAATAAAGCTTGTAAATTTTCAGACAATTTGTCAGTTGACAACTTTTAAAAAGAAATTTGGTTCTTGAGATATGCGTCTTTGAAGTTAGGCGCCGGACAGCAGTGAACCAGCAGTCTCTAGATGTCTGCGCTCTCTTCAAATGCCCGTATCTCTGCTAGTTTTGAAGATGTTCAAATTTTGTTAACTACAAAAATGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACCAAGGAAAGGAGGTGT</pcr_primer_p1>
		<pcr_primer_p2>TGAATATCTTGAAAACCCATAGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTACCAAGGAAAGGAGGTGTCTGCTCGTGGACCGGCTTGCGCTTCCAGCACCATTGTTCTCTGCCGTAAGGCCAAACCAGGACACAAGTTGGACGGATAAAGAAGAGAGAAGCGACGCGAAAACACACGAAAAAGGACGGATGATTTTATTCGCTTCTTTTTGTTTTTTTTTAATGAGAAGAATGAAAGATACTATTGAACTTGTGCTGATGTTTATTTTTTGTCTGTATCTCTATGGGTTTTCAAGATATTCA</canonical_amplicon>
		<polymorphic_amplicon>TTACCAAGGAAAGGAGGTGTCTGCTCGTGGACCGGCTTGCGCTTCCAGCACCATTGTTCTCTGCCGTAAGGCCAAACCAGGACACAAGTTGGACGGATAAAGAAGAGAGAAGCGACGCGAAAACACACGAAAAAGGACGGATGATTTTATTCGCTTCYTTTTGTTTTTTTTTAATGAGAAGAATGAAAGATACTATTGAACTTGTGCTGATGTTTATTTTTTGTCTGTATCTCTATGGGTTTTCAAGATATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26932</snp_id>
        <super_contig>c002701367.Contig1</super_contig>
        <contig_pos>10573</contig_pos>
        <strand></strand>
        <context>TACTATTGAA[C/T]TTGTGCTGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGCTTCTTTTTGTTTTTTTTTAATGAGAAGAATGAAAGATACTATTGAA</left_flank>
        <right_flank>TTGTGCTGATGTTTATTTTTTGTCTGTATCTCTATGGGTTTTCAAGATAT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTTGCCCAACCCTCATTTTCATCCTTCCAGATTGCTGCCAACTTCTCCTGGTTCAACAACGAATACTGCAAGAATGTCGGATCCATCCAACTCCTCGTCCACCTTCCAGACACTGTTCGTGGCTACGACTACGGTTGGATTCCATTCCCAGAGGCTGCCAAGTTCGGAGACAAGGAATGGCACCCGGTCCATGTCAACAACCACAAGGGAGACATCTCTGTCGGAGTCGTCAACGTCGCCGGAGGAAAACAGATACTCGCCAAGGTCGACGTCCGTAACGAGTCGTACGGATATGGTTACCAAGGAAAGGAGGTGTCTGCTCGTGGACCGGCTTGCGCTTCCAGCACCATTGTTCTCTGCCGTAAGGCCAAACCAGGACACAAGTTGGACGGATAAAGAAGAGAGAAGCGACGCGAAAACACACGAAAAAGGACGGATGATTTTATTCGCTTCTTTTTGTTTTTTTTTAATGAGAAGAATGAAAGATACTATTGAACTTGTGCTGATGTTTATTTTTTGTCTGTATCTCTATGGGTTTTCAAGATATTCAAATTATGTAAACTACAAAAATTAAGTTTATCAAATTTTACATATTTTCATAGTTGGCTACTTTTGATATCTTTTTTAGTTTTCGAGATATATCTTTAAAGTTTGGCGCCGAAACGCAGAGAGCCACGAACGTCTAGATGTCTGCGCTCTCTTCAAACGCCTGTATCTCGTCTAGTTTTAAAGATTTTTAAATTTTGTAAACCGCGAAAATAAAGCTTGTAAATTTTCAGACAATTTGTCAGTTGACAACTTTTAAAAAGAAATTTGGTTCTTGAGATATGCGTCTTTGAAGTTAGGCGCCGGACAGCAGTGAACCAGCAGTCTCTAGATGTCTGCGCTCTCTTCAAATGCCCGTATCTCTGCTAGTTTTGAAGATGTTCAAATTTTGTTAACTACAAAAATGAAGCTTTTTGAATTTTACACATTTTTCTGATTTTCAACTTTTTGA</canonical>
            <polymorphic>AAACTTGCCCAACCCTCATTTTCATCCTTCCAGATTGCTGCCAACTTCTCCTGGTTCAACAACGAATACTGCAAGAATGTCGGATCCATCCAACTCCTCGTCCACCTTCCAGACACTGTTCGTGGCTACGACTACGGTTGGATTCCATTCCCAGAGGCTGCCAAGTTCGGAGACAAGGAATGGCACCCGGTCCATGTCAACAACCACAAGGGAGACATCTCTGTCGGAGTCGTCAACGTCGCCGGAGGAAAACAGATACTCGCCAAGGTCGACGTCCGTAACGAGTCGTACGGATATGGTTACCAAGGAAAGGAGGTGTCTGCTCGTGGACCGGCTTGCGCTTCCAGCACCATTGTTCTCTGCCGTAAGGCCAAACCAGGACACAAGTTGGACGGATAAAGAAGAGAGAAGCGACGCGAAAACACACGAAAAAGGACGGATGATTTTATTCGCTTCTTTTTGTTTTTTTTTAATGAGAAGAATGAAAGATACTATTGAAYTTGTGCTGATGTTTATTTTTTGTCTGTATCTCTATGGGTTTTCAAGATATTCAAATTATGTAAACTACAAAAATTAAGTTTATCAAATTTTACATATTTTCATAGTTGGCTACTTTTGATATCTTTTTTAGTTTTCGAGATATATCTTTAAAGTTTGGCGCCGAAACGCAGAGAGCCACGAACGTCTAGATGTCTGCGCTCTCTTCAAACGCCTGTATCTCGTCTAGTTTTAAAGATTTTTAAATTTTGTAAACCGCGAAAATAAAGCTTGTAAATTTTCAGACAATTTGTCAGTTGACAACTTTTAAAAAGAAATTTGGTTCTTGAGATATGCGTCTTTGAAGTTAGGCGCCGGACAGCAGTGAACCAGCAGTCTCTAGATGTCTGCGCTCTCTTCAAATGCCCGTATCTCTGCTAGTTTTGAAGATGTTCAAATTTTGTTAACTACAAAAATGAAGCTTTTTGAATTTTACACATTTTTCTGATTTTCAACTTTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACCAAGGAAAGGAGGTGT</pcr_primer_p1>
		<pcr_primer_p2>TTGAATATCTTGAAAACCCATAG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TTACCAAGGAAAGGAGGTGTCTGCTCGTGGACCGGCTTGCGCTTCCAGCACCATTGTTCTCTGCCGTAAGGCCAAACCAGGACACAAGTTGGACGGATAAAGAAGAGAGAAGCGACGCGAAAACACACGAAAAAGGACGGATGATTTTATTCGCTTCTTTTTGTTTTTTTTTAATGAGAAGAATGAAAGATACTATTGAACTTGTGCTGATGTTTATTTTTTGTCTGTATCTCTATGGGTTTTCAAGATATTCAA</canonical_amplicon>
		<polymorphic_amplicon>TTACCAAGGAAAGGAGGTGTCTGCTCGTGGACCGGCTTGCGCTTCCAGCACCATTGTTCTCTGCCGTAAGGCCAAACCAGGACACAAGTTGGACGGATAAAGAAGAGAGAAGCGACGCGAAAACACACGAAAAAGGACGGATGATTTTATTCGCTTCTTTTTGTTTTTTTTTAATGAGAAGAATGAAAGATACTATTGAAYTTGTGCTGATGTTTATTTTTTGTCTGTATCTCTATGGGTTTTCAAGATATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26936</snp_id>
        <super_contig>c002701403.Contig1</super_contig>
        <contig_pos>61011</contig_pos>
        <strand>+</strand>
        <context>GAATCCTTTT[A/G]ATTraaagtt</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTTTGGGTTTTTATATTAACTAATTTCTGGCATTTTGAGAATCCTTTT</left_flank>
        <right_flank>ATTAAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCGATGTATCTCGGCTTCTAGATGAGCTAAAAAGATGAAAATTAAACAGAAAAGCTGAAAAATGAGCATGCTTTATAACAAAATAAAATTTTTAAAATTTGGAAAAAAAATTTTTTTTTCGATTTTTCACAAAAACTTTCAAACTGAATATACTATGAGTAAAGTATAAAATTTCCTCAAGTTTTCTAAAAAAATGAACGCTCTAGCTCTTTTGAAAGCCGAGATATAGGCATTTCAAGTTTCAGTGTCTGCGTCTCTCATGATGCGCGAGAGACGCAGTGTGTCTCGTTGTCTGCGTCTCTTCCAAAACTCAAAGCACTGTATCTCGGCTCCTGGACGTCCTAGAACGCTCATTTTTTCACCAAAGTTTTTGAAATTTTAAGCTTAACCAAAAATTGCATTTCGGAAAAAATTTCAAAAGAAAATTTTTTTTTTGAAATTCTTAGAAAGTTTTGGGTTTTTATATTAACTAATTTCTGGCATTTTGAGAATCCTTTTGATTAAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAGTTTTGAAGGGACGCAGACAGTTAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTTAAATCGTTGTATCTTGGCTCAAAATTGAGCTAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCTCAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCTTGAAACCCAATTCTTCTACTTACGAATACTCCAATTTCTTATTGTATCTCATTAACCATAAAGCCACACAGAAATTGAATAAAGTGAGTACGGTGCAAACTGCAAAGTATACTGTAGACCGTCTAGCGCTAGCTTTTGGAATCATAAAACATCCCAAGACGGCCCCATCCAGCGGGTCATCAAATAATAGTAATGGACCAGTAATTCCACTAAAGAATAAAATGAAAAATA</canonical>
            <polymorphic>AGCGATGTATCTCGGCTTCTAGATGAGCTAAAAAGATGAAAATTAAACAGAAAAGCTGAAAAATGAGCATGCTTTATAACAAAATAAAATTTTTAAAATTTGGAAAAAAAATTTTTTTTTCGATTTTTCACAAAAACTTTCAAACTGAATATACTATGAGTAAAGTATAAAATTTCCTCAAGTTTTCTAAAAAAATGAACGCTCTAGCTCTTTTGAAAGCCGAGATATAGGCATTTCAAGTTTCAGTGTCTGCGTCTCTCATGATGCGCGAGAGACGCAGTGTGTCTCGTTGTCTGCGTCTCTTCCAAAACTCAAAGCACTGTATCTCGGCTCCTGGACGTCCTAGAACGCTCATTTTTTCACCAAAGTTTTTGAAATTTTAAGCTTAACCAAAAATTGCATTTCGGAAAAAATTTCAAAAGAAAATTTTTTTTTTGAAATTCTTAGAAAGTTTTGGGTTTTTATATTAACTAATTTCTGGCATTTTGAGAATCCTTTTRATTAAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAGTTTTGAAGGGACGCAGACAGTTAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTTAAATCGTTGTATCTTGGCTCAAAATTGAGCTAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCTCAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCTTGAAACCCAATTCTTCTACTTACGAATACTCCAATTTCTTATTGTATCTCATTAACCATAAAGCCACACAGAAATTGAATAAAGTGAGTACGGTGCAAACTGCAAAGTATACTGTAGACCGTCTAGCGCTAGCTTTTGGAATCATAAAACATCCCAAGACGGCCCCATCCAGCGGGTCATCAAATAATAGTAATGGACCAGTAATTCCACTAAAGAATAAAATGAAAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTAGAAAGTTTTGGGTTTTTA</pcr_primer_p1>
		<pcr_primer_p2>AGGTCATCTAGGAGCTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>328</pcr_amplicon_size>
		<canonical_amplicon>TCTTAGAAAGTTTTGGGTTTTTATATTAACTAATTTCTGGCATTTTGAGAATCCTTTTGATTAAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAGTTTTGAAGGGACGCAGACAGTTAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTTAAATCGTTGTATCTTGGCTCAAAATTGAGCTAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCTCAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCT</canonical_amplicon>
		<polymorphic_amplicon>TCTTAGAAAGTTTTGGGTTTTTATATTAACTAATTTCTGGCATTTTGAGAATCCTTTTRATTAAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAGTTTTGAAGGGACGCAGACAGTTAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTTAAATCGTTGTATCTTGGCTCAAAATTGAGCTAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCTCAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26937</snp_id>
        <super_contig>c002701403.Contig1</super_contig>
        <contig_pos>61015</contig_pos>
        <strand></strand>
        <context>CCTTTTRATT[A/G]aaagttcagc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGGGTTTTTATATTAACTAATTTCTGGCATTTTGAGAATCCTTTTGATT</left_flank>
        <right_flank>AAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTATCTCGGCTTCTAGATGAGCTAAAAAGATGAAAATTAAACAGAAAAGCTGAAAAATGAGCATGCTTTATAACAAAATAAAATTTTTAAAATTTGGAAAAAAAATTTTTTTTTCGATTTTTCACAAAAACTTTCAAACTGAATATACTATGAGTAAAGTATAAAATTTCCTCAAGTTTTCTAAAAAAATGAACGCTCTAGCTCTTTTGAAAGCCGAGATATAGGCATTTCAAGTTTCAGTGTCTGCGTCTCTCATGATGCGCGAGAGACGCAGTGTGTCTCGTTGTCTGCGTCTCTTCCAAAACTCAAAGCACTGTATCTCGGCTCCTGGACGTCCTAGAACGCTCATTTTTTCACCAAAGTTTTTGAAATTTTAAGCTTAACCAAAAATTGCATTTCGGAAAAAATTTCAAAAGAAAATTTTTTTTTTGAAATTCTTAGAAAGTTTTGGGTTTTTATATTAACTAATTTCTGGCATTTTGAGAATCCTTTTGATTAAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAGTTTTGAAGGGACGCAGACAGTTAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTTAAATCGTTGTATCTTGGCTCAAAATTGAGCTAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCTCAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCTTGAAACCCAATTCTTCTACTTACGAATACTCCAATTTCTTATTGTATCTCATTAACCATAAAGCCACACAGAAATTGAATAAAGTGAGTACGGTGCAAACTGCAAAGTATACTGTAGACCGTCTAGCGCTAGCTTTTGGAATCATAAAACATCCCAAGACGGCCCCATCCAGCGGGTCATCAAATAATAGTAATGGACCAGTAATTCCACTAAAGAATAAAATGAAAAATAGAAG</canonical>
            <polymorphic>ATGTATCTCGGCTTCTAGATGAGCTAAAAAGATGAAAATTAAACAGAAAAGCTGAAAAATGAGCATGCTTTATAACAAAATAAAATTTTTAAAATTTGGAAAAAAAATTTTTTTTTCGATTTTTCACAAAAACTTTCAAACTGAATATACTATGAGTAAAGTATAAAATTTCCTCAAGTTTTCTAAAAAAATGAACGCTCTAGCTCTTTTGAAAGCCGAGATATAGGCATTTCAAGTTTCAGTGTCTGCGTCTCTCATGATGCGCGAGAGACGCAGTGTGTCTCGTTGTCTGCGTCTCTTCCAAAACTCAAAGCACTGTATCTCGGCTCCTGGACGTCCTAGAACGCTCATTTTTTCACCAAAGTTTTTGAAATTTTAAGCTTAACCAAAAATTGCATTTCGGAAAAAATTTCAAAAGAAAATTTTTTTTTTGAAATTCTTAGAAAGTTTTGGGTTTTTATATTAACTAATTTCTGGCATTTTGAGAATCCTTTTGATTRAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAGTTTTGAAGGGACGCAGACAGTTAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTTAAATCGTTGTATCTTGGCTCAAAATTGAGCTAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCTCAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCTTGAAACCCAATTCTTCTACTTACGAATACTCCAATTTCTTATTGTATCTCATTAACCATAAAGCCACACAGAAATTGAATAAAGTGAGTACGGTGCAAACTGCAAAGTATACTGTAGACCGTCTAGCGCTAGCTTTTGGAATCATAAAACATCCCAAGACGGCCCCATCCAGCGGGTCATCAAATAATAGTAATGGACCAGTAATTCCACTAAAGAATAAAATGAAAAATAGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>287 197 183 96 81 50 39 35 16 10 6</canonical_bands>
                <polymorphic_bands>287 197 183 96 81 51 50 39 10 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTAGAAAGTTTTGGGTTTTTA</pcr_primer_p1>
		<pcr_primer_p2>AGGTCATCTAGGAGCTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>328</pcr_amplicon_size>
		<canonical_amplicon>TCTTAGAAAGTTTTGGGTTTTTATATTAACTAATTTCTGGCATTTTGAGAATCCTTTTGATTAAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAGTTTTGAAGGGACGCAGACAGTTAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTTAAATCGTTGTATCTTGGCTCAAAATTGAGCTAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCTCAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCT</canonical_amplicon>
		<polymorphic_amplicon>TCTTAGAAAGTTTTGGGTTTTTATATTAACTAATTTCTGGCATTTTGAGAATCCTTTTGATTRAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAGTTTTGAAGGGACGCAGACAGTTAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTTAAATCGTTGTATCTTGGCTCAAAATTGAGCTAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCTCAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26938</snp_id>
        <super_contig>c002701403.Contig1</super_contig>
        <contig_pos>61137</contig_pos>
        <strand></strand>
        <context>ccaaaacttt[A/T]aatcgttgta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTT</left_flank>
        <right_flank>AATCGTTGTATCTTGGCTCAAAATTGAGCTAGAAAAGTCAACTTTTTTGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCACAAAAACTTTCAAACTGAATATACTATGAGTAAAGTATAAAATTTCCTCAAGTTTTCTAAAAAAATGAACGCTCTAGCTCTTTTGAAAGCCGAGATATAGGCATTTCAAGTTTCAGTGTCTGCGTCTCTCATGATGCGCGAGAGACGCAGTGTGTCTCGTTGTCTGCGTCTCTTCCAAAACTCAAAGCACTGTATCTCGGCTCCTGGACGTCCTAGAACGCTCATTTTTTCACCAAAGTTTTTGAAATTTTAAGCTTAACCAAAAATTGCATTTCGGAAAAAATTTCAAAAGAAAATTTTTTTTTTGAAATTCTTAGAAAGTTTTGGGTTTTTATATTAACTAATTTCTGGCATTTTGAGAATCCTTTTGATTAAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAGTTTTGAAGGGACGCAGACAGTTAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTTAAATCGTTGTATCTTGGCTCAAAATTGAGCTAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCTCAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCTTGAAACCCAATTCTTCTACTTACGAATACTCCAATTTCTTATTGTATCTCATTAACCATAAAGCCACACAGAAATTGAATAAAGTGAGTACGGTGCAAACTGCAAAGTATACTGTAGACCGTCTAGCGCTAGCTTTTGGAATCATAAAACATCCCAAGACGGCCCCATCCAGCGGGTCATCAAATAATAGTAATGGACCAGTAATTCCACTAAAGAATAAAATGAAAAATAGAAGAATTAAAGAGTATTTGATGGATTTTTTGGATTTAAAATTTTTGGAAAAATTCGAAAAAAGGCGTTCAATAATCAGCCCAGTTTGTCCATAGATCATTCCAGATGTACAGAAGAGCATGAATT</canonical>
            <polymorphic>TTCACAAAAACTTTCAAACTGAATATACTATGAGTAAAGTATAAAATTTCCTCAAGTTTTCTAAAAAAATGAACGCTCTAGCTCTTTTGAAAGCCGAGATATAGGCATTTCAAGTTTCAGTGTCTGCGTCTCTCATGATGCGCGAGAGACGCAGTGTGTCTCGTTGTCTGCGTCTCTTCCAAAACTCAAAGCACTGTATCTCGGCTCCTGGACGTCCTAGAACGCTCATTTTTTCACCAAAGTTTTTGAAATTTTAAGCTTAACCAAAAATTGCATTTCGGAAAAAATTTCAAAAGAAAATTTTTTTTTTGAAATTCTTAGAAAGTTTTGGGTTTTTATATTAACTAATTTCTGGCATTTTGAGAATCCTTTTGATTAAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAGTTTTGAAGGGACGCAGACAGTTAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTTWAATCGTTGTATCTTGGCTCAAAATTGAGCTAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCTCAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCTTGAAACCCAATTCTTCTACTTACGAATACTCCAATTTCTTATTGTATCTCATTAACCATAAAGCCACACAGAAATTGAATAAAGTGAGTACGGTGCAAACTGCAAAGTATACTGTAGACCGTCTAGCGCTAGCTTTTGGAATCATAAAACATCCCAAGACGGCCCCATCCAGCGGGTCATCAAATAATAGTAATGGACCAGTAATTCCACTAAAGAATAAAATGAAAAATAGAAGAATTAAAGAGTATTTGATGGATTTTTTGGATTTAAAATTTTTGGAAAAATTCGAAAAAAGGCGTTCAATAATCAGCCCAGTTTGTCCATAGATCATTCCAGATGTACAGAAGAGCATGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 412 89</canonical_bands>
                <polymorphic_bands>911 89</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>254 197 186 96 90 81 35 29 16 10 6</canonical_bands>
                <polymorphic_bands>293 254 186 90 81 35 29 16 10 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCATTTTGAGAATCCTTTT</pcr_primer_p1>
		<pcr_primer_p2>AGGTCATCTAGGAGCTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>290</pcr_amplicon_size>
		<canonical_amplicon>GGCATTTTGAGAATCCTTTTGATTAAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAGTTTTGAAGGGACGCAGACAGTTAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTTAAATCGTTGTATCTTGGCTCAAAATTGAGCTAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCTCAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCT</canonical_amplicon>
		<polymorphic_amplicon>GGCATTTTGAGAATCCTTTTGATTAAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAGTTTTGAAGGGACGCAGACAGTTAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTTWAATCGTTGTATCTTGGCTCAAAATTGAGCTAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCTCAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26939</snp_id>
        <super_contig>c002701403.Contig1</super_contig>
        <contig_pos>61167</contig_pos>
        <strand></strand>
        <context>aaaattgagc[T/C]agaaaagtca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTGCGTCTCTCCAAAACTTTAAATCGTTGTATCTTGGCTCAAAATTGAGC</left_flank>
        <right_flank>AGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCTCAGAAAATTTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGTAAAGTATAAAATTTCCTCAAGTTTTCTAAAAAAATGAACGCTCTAGCTCTTTTGAAAGCCGAGATATAGGCATTTCAAGTTTCAGTGTCTGCGTCTCTCATGATGCGCGAGAGACGCAGTGTGTCTCGTTGTCTGCGTCTCTTCCAAAACTCAAAGCACTGTATCTCGGCTCCTGGACGTCCTAGAACGCTCATTTTTTCACCAAAGTTTTTGAAATTTTAAGCTTAACCAAAAATTGCATTTCGGAAAAAATTTCAAAAGAAAATTTTTTTTTTGAAATTCTTAGAAAGTTTTGGGTTTTTATATTAACTAATTTCTGGCATTTTGAGAATCCTTTTGATTAAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAGTTTTGAAGGGACGCAGACAGTTAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTTAAATCGTTGTATCTTGGCTCAAAATTGAGCTAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCTCAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCTTGAAACCCAATTCTTCTACTTACGAATACTCCAATTTCTTATTGTATCTCATTAACCATAAAGCCACACAGAAATTGAATAAAGTGAGTACGGTGCAAACTGCAAAGTATACTGTAGACCGTCTAGCGCTAGCTTTTGGAATCATAAAACATCCCAAGACGGCCCCATCCAGCGGGTCATCAAATAATAGTAATGGACCAGTAATTCCACTAAAGAATAAAATGAAAAATAGAAGAATTAAAGAGTATTTGATGGATTTTTTGGATTTAAAATTTTTGGAAAAATTCGAAAAAAGGCGTTCAATAATCAGCCCAGTTTGTCCATAGATCATTCCAGATGTACAGAAGAGCATGAATTTATAAATTGGAGCACATTGAGCTTCGGTTT</canonical>
            <polymorphic>TGAGTAAAGTATAAAATTTCCTCAAGTTTTCTAAAAAAATGAACGCTCTAGCTCTTTTGAAAGCCGAGATATAGGCATTTCAAGTTTCAGTGTCTGCGTCTCTCATGATGCGCGAGAGACGCAGTGTGTCTCGTTGTCTGCGTCTCTTCCAAAACTCAAAGCACTGTATCTCGGCTCCTGGACGTCCTAGAACGCTCATTTTTTCACCAAAGTTTTTGAAATTTTAAGCTTAACCAAAAATTGCATTTCGGAAAAAATTTCAAAAGAAAATTTTTTTTTTGAAATTCTTAGAAAGTTTTGGGTTTTTATATTAACTAATTTCTGGCATTTTGAGAATCCTTTTGATTAAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAGTTTTGAAGGGACGCAGACAGTTAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTTAAATCGTTGTATCTTGGCTCAAAATTGAGCYAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCTCAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCTTGAAACCCAATTCTTCTACTTACGAATACTCCAATTTCTTATTGTATCTCATTAACCATAAAGCCACACAGAAATTGAATAAAGTGAGTACGGTGCAAACTGCAAAGTATACTGTAGACCGTCTAGCGCTAGCTTTTGGAATCATAAAACATCCCAAGACGGCCCCATCCAGCGGGTCATCAAATAATAGTAATGGACCAGTAATTCCACTAAAGAATAAAATGAAAAATAGAAGAATTAAAGAGTATTTGATGGATTTTTTGGATTTAAAATTTTTGGAAAAATTCGAAAAAAGGCGTTCAATAATCAGCCCAGTTTGTCCATAGATCATTCCAGATGTACAGAAGAGCATGAATTTATAAATTGGAGCACATTGAGCTTCGGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>270 246 177 146 101 51 9</canonical_bands>
                <polymorphic_bands>371 246 177 146 51 9</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>312 258 139 133 104 48 6</canonical_bands>
                <polymorphic_bands>416 258 139 133 48 6</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>149 148 111 101 98 77 69 68 54 51 30 12 12 11 9</canonical_bands>
                <polymorphic_bands>149 148 113 111 98 77 69 68 54 51 30 12 11 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCATTTTGAGAATCCTTTT</pcr_primer_p1>
		<pcr_primer_p2>AGGTCATCTAGGAGCTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>290</pcr_amplicon_size>
		<canonical_amplicon>GGCATTTTGAGAATCCTTTTGATTAAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAGTTTTGAAGGGACGCAGACAGTTAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTTAAATCGTTGTATCTTGGCTCAAAATTGAGCTAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCTCAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCT</canonical_amplicon>
		<polymorphic_amplicon>GGCATTTTGAGAATCCTTTTGATTAAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAGTTTTGAAGGGACGCAGACAGTTAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTTAAATCGTTGTATCTTGGCTCAAAATTGAGCYAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCTCAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26940</snp_id>
        <super_contig>c002701403.Contig1</super_contig>
        <contig_pos>61205</contig_pos>
        <strand></strand>
        <context>aaggaatttc[T/C]cagaaaattt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCAAAATTGAGCTAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTC</left_flank>
        <right_flank>CAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAACGCTCTAGCTCTTTTGAAAGCCGAGATATAGGCATTTCAAGTTTCAGTGTCTGCGTCTCTCATGATGCGCGAGAGACGCAGTGTGTCTCGTTGTCTGCGTCTCTTCCAAAACTCAAAGCACTGTATCTCGGCTCCTGGACGTCCTAGAACGCTCATTTTTTCACCAAAGTTTTTGAAATTTTAAGCTTAACCAAAAATTGCATTTCGGAAAAAATTTCAAAAGAAAATTTTTTTTTTGAAATTCTTAGAAAGTTTTGGGTTTTTATATTAACTAATTTCTGGCATTTTGAGAATCCTTTTGATTAAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAGTTTTGAAGGGACGCAGACAGTTAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTTAAATCGTTGTATCTTGGCTCAAAATTGAGCTAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCTCAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCTTGAAACCCAATTCTTCTACTTACGAATACTCCAATTTCTTATTGTATCTCATTAACCATAAAGCCACACAGAAATTGAATAAAGTGAGTACGGTGCAAACTGCAAAGTATACTGTAGACCGTCTAGCGCTAGCTTTTGGAATCATAAAACATCCCAAGACGGCCCCATCCAGCGGGTCATCAAATAATAGTAATGGACCAGTAATTCCACTAAAGAATAAAATGAAAAATAGAAGAATTAAAGAGTATTTGATGGATTTTTTGGATTTAAAATTTTTGGAAAAATTCGAAAAAAGGCGTTCAATAATCAGCCCAGTTTGTCCATAGATCATTCCAGATGTACAGAAGAGCATGAATTTATAAATTGGAGCACATTGAGCTTCGGTTTTCAGAAAATTAGAATCTCCGCGAAATTCCAGATTCTTC</canonical>
            <polymorphic>ATGAACGCTCTAGCTCTTTTGAAAGCCGAGATATAGGCATTTCAAGTTTCAGTGTCTGCGTCTCTCATGATGCGCGAGAGACGCAGTGTGTCTCGTTGTCTGCGTCTCTTCCAAAACTCAAAGCACTGTATCTCGGCTCCTGGACGTCCTAGAACGCTCATTTTTTCACCAAAGTTTTTGAAATTTTAAGCTTAACCAAAAATTGCATTTCGGAAAAAATTTCAAAAGAAAATTTTTTTTTTGAAATTCTTAGAAAGTTTTGGGTTTTTATATTAACTAATTTCTGGCATTTTGAGAATCCTTTTGATTAAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAGTTTTGAAGGGACGCAGACAGTTAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTTAAATCGTTGTATCTTGGCTCAAAATTGAGCTAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCYCAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCTTGAAACCCAATTCTTCTACTTACGAATACTCCAATTTCTTATTGTATCTCATTAACCATAAAGCCACACAGAAATTGAATAAAGTGAGTACGGTGCAAACTGCAAAGTATACTGTAGACCGTCTAGCGCTAGCTTTTGGAATCATAAAACATCCCAAGACGGCCCCATCCAGCGGGTCATCAAATAATAGTAATGGACCAGTAATTCCACTAAAGAATAAAATGAAAAATAGAAGAATTAAAGAGTATTTGATGGATTTTTTGGATTTAAAATTTTTGGAAAAATTCGAAAAAAGGCGTTCAATAATCAGCCCAGTTTGTCCATAGATCATTCCAGATGTACAGAAGAGCATGAATTTATAAATTGGAGCACATTGAGCTTCGGTTTTCAGAAAATTAGAATCTCCGCGAAATTCCAGATTCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 250 249</canonical_bands>
                <polymorphic_bands>751 249</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>436 290 212 35 27</canonical_bands>
                <polymorphic_bands>436 317 212 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCATTTTGAGAATCCTTTT</pcr_primer_p1>
		<pcr_primer_p2>AGGTCATCTAGGAGCTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>290</pcr_amplicon_size>
		<canonical_amplicon>GGCATTTTGAGAATCCTTTTGATTAAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAGTTTTGAAGGGACGCAGACAGTTAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTTAAATCGTTGTATCTTGGCTCAAAATTGAGCTAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCTCAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCT</canonical_amplicon>
		<polymorphic_amplicon>GGCATTTTGAGAATCCTTTTGATTAAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAGTTTTGAAGGGACGCAGACAGTTAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTTAAATCGTTGTATCTTGGCTCAAAATTGAGCTAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCYCAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26941</snp_id>
        <super_contig>c002701403.Contig1</super_contig>
        <contig_pos>61293</contig_pos>
        <strand></strand>
        <context>AAACCCAATT[C/T]YTCTACTTAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCTTGAAACCCAATT</left_flank>
        <right_flank>TTCTACTTACGAATACTCCAATTTCTTATTGTATCTCATTAACCATAAAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCTCGTTGTCTGCGTCTCTTCCAAAACTCAAAGCACTGTATCTCGGCTCCTGGACGTCCTAGAACGCTCATTTTTTCACCAAAGTTTTTGAAATTTTAAGCTTAACCAAAAATTGCATTTCGGAAAAAATTTCAAAAGAAAATTTTTTTTTTGAAATTCTTAGAAAGTTTTGGGTTTTTATATTAACTAATTTCTGGCATTTTGAGAATCCTTTTGATTAAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAGTTTTGAAGGGACGCAGACAGTTAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTTAAATCGTTGTATCTTGGCTCAAAATTGAGCTAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCTCAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCTTGAAACCCAATTCTTCTACTTACGAATACTCCAATTTCTTATTGTATCTCATTAACCATAAAGCCACACAGAAATTGAATAAAGTGAGTACGGTGCAAACTGCAAAGTATACTGTAGACCGTCTAGCGCTAGCTTTTGGAATCATAAAACATCCCAAGACGGCCCCATCCAGCGGGTCATCAAATAATAGTAATGGACCAGTAATTCCACTAAAGAATAAAATGAAAAATAGAAGAATTAAAGAGTATTTGATGGATTTTTTGGATTTAAAATTTTTGGAAAAATTCGAAAAAAGGCGTTCAATAATCAGCCCAGTTTGTCCATAGATCATTCCAGATGTACAGAAGAGCATGAATTTATAAATTGGAGCACATTGAGCTTCGGTTTTCAGAAAATTAGAATCTCCGCGAAATTCCAGATTCTTCAAGACCAGAATCATTGCTTCATAGGAATAGGAAATTTGGAAAAAGTTGGCGAAACATAAATTTTGGAATAGCAAAATTTTTGTGGACC</canonical>
            <polymorphic>TGTCTCGTTGTCTGCGTCTCTTCCAAAACTCAAAGCACTGTATCTCGGCTCCTGGACGTCCTAGAACGCTCATTTTTTCACCAAAGTTTTTGAAATTTTAAGCTTAACCAAAAATTGCATTTCGGAAAAAATTTCAAAAGAAAATTTTTTTTTTGAAATTCTTAGAAAGTTTTGGGTTTTTATATTAACTAATTTCTGGCATTTTGAGAATCCTTTTGATTAAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAGTTTTGAAGGGACGCAGACAGTTAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTTAAATCGTTGTATCTTGGCTCAAAATTGAGCTAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCTCAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCTTGAAACCCAATTYTTCTACTTACGAATACTCCAATTTCTTATTGTATCTCATTAACCATAAAGCCACACAGAAATTGAATAAAGTGAGTACGGTGCAAACTGCAAAGTATACTGTAGACCGTCTAGCGCTAGCTTTTGGAATCATAAAACATCCCAAGACGGCCCCATCCAGCGGGTCATCAAATAATAGTAATGGACCAGTAATTCCACTAAAGAATAAAATGAAAAATAGAAGAATTAAAGAGTATTTGATGGATTTTTTGGATTTAAAATTTTTGGAAAAATTCGAAAAAAGGCGTTCAATAATCAGCCCAGTTTGTCCATAGATCATTCCAGATGTACAGAAGAGCATGAATTTATAAATTGGAGCACATTGAGCTTCGGTTTTCAGAAAATTAGAATCTCCGCGAAATTCCAGATTCTTCAAGACCAGAATCATTGCTTCATAGGAATAGGAAATTTGGAAAAAGTTGGCGAAACATAAATTTTGGAATAGCAAAATTTTTGTGGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCATTTTGAGAATCCTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTGGCTTTATGGTTAATGAGATA</pcr_primer_p2>
		<pcr_amplicon_size>357</pcr_amplicon_size>
		<canonical_amplicon>GGCATTTTGAGAATCCTTTTGATTAAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAGTTTTGAAGGGACGCAGACAGTTAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTTAAATCGTTGTATCTTGGCTCAAAATTGAGCTAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCTCAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCTTGAAACCCAATTCTTCTACTTACGAATACTCCAATTTCTTATTGTATCTCATTAACCATAAAGCCAC</canonical_amplicon>
		<polymorphic_amplicon>GGCATTTTGAGAATCCTTTTGATTAAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAGTTTTGAAGGGACGCAGACAGTTAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTTAAATCGTTGTATCTTGGCTCAAAATTGAGCTAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCTCAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCTTGAAACCCAATTYTTCTACTTACGAATACTCCAATTTCTTATTGTATCTCATTAACCATAAAGCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26942</snp_id>
        <super_contig>c002701403.Contig1</super_contig>
        <contig_pos>61294</contig_pos>
        <strand>+</strand>
        <context>AACCCAATTY[C/T]TCTACTTACG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCTTGAAACCCAATTC</left_flank>
        <right_flank>TCTACTTACGAATACTCCAATTTCTTATTGTATCTCATTAACCATAAAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTCGTTGTCTGCGTCTCTTCCAAAACTCAAAGCACTGTATCTCGGCTCCTGGACGTCCTAGAACGCTCATTTTTTCACCAAAGTTTTTGAAATTTTAAGCTTAACCAAAAATTGCATTTCGGAAAAAATTTCAAAAGAAAATTTTTTTTTTGAAATTCTTAGAAAGTTTTGGGTTTTTATATTAACTAATTTCTGGCATTTTGAGAATCCTTTTGATTAAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAGTTTTGAAGGGACGCAGACAGTTAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTTAAATCGTTGTATCTTGGCTCAAAATTGAGCTAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCTCAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCTTGAAACCCAATTCTTCTACTTACGAATACTCCAATTTCTTATTGTATCTCATTAACCATAAAGCCACACAGAAATTGAATAAAGTGAGTACGGTGCAAACTGCAAAGTATACTGTAGACCGTCTAGCGCTAGCTTTTGGAATCATAAAACATCCCAAGACGGCCCCATCCAGCGGGTCATCAAATAATAGTAATGGACCAGTAATTCCACTAAAGAATAAAATGAAAAATAGAAGAATTAAAGAGTATTTGATGGATTTTTTGGATTTAAAATTTTTGGAAAAATTCGAAAAAAGGCGTTCAATAATCAGCCCAGTTTGTCCATAGATCATTCCAGATGTACAGAAGAGCATGAATTTATAAATTGGAGCACATTGAGCTTCGGTTTTCAGAAAATTAGAATCTCCGCGAAATTCCAGATTCTTCAAGACCAGAATCATTGCTTCATAGGAATAGGAAATTTGGAAAAAGTTGGCGAAACATAAATTTTGGAATAGCAAAATTTTTGTGGACCA</canonical>
            <polymorphic>GTCTCGTTGTCTGCGTCTCTTCCAAAACTCAAAGCACTGTATCTCGGCTCCTGGACGTCCTAGAACGCTCATTTTTTCACCAAAGTTTTTGAAATTTTAAGCTTAACCAAAAATTGCATTTCGGAAAAAATTTCAAAAGAAAATTTTTTTTTTGAAATTCTTAGAAAGTTTTGGGTTTTTATATTAACTAATTTCTGGCATTTTGAGAATCCTTTTGATTAAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAGTTTTGAAGGGACGCAGACAGTTAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTTAAATCGTTGTATCTTGGCTCAAAATTGAGCTAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCTCAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCTTGAAACCCAATTCYTCTACTTACGAATACTCCAATTTCTTATTGTATCTCATTAACCATAAAGCCACACAGAAATTGAATAAAGTGAGTACGGTGCAAACTGCAAAGTATACTGTAGACCGTCTAGCGCTAGCTTTTGGAATCATAAAACATCCCAAGACGGCCCCATCCAGCGGGTCATCAAATAATAGTAATGGACCAGTAATTCCACTAAAGAATAAAATGAAAAATAGAAGAATTAAAGAGTATTTGATGGATTTTTTGGATTTAAAATTTTTGGAAAAATTCGAAAAAAGGCGTTCAATAATCAGCCCAGTTTGTCCATAGATCATTCCAGATGTACAGAAGAGCATGAATTTATAAATTGGAGCACATTGAGCTTCGGTTTTCAGAAAATTAGAATCTCCGCGAAATTCCAGATTCTTCAAGACCAGAATCATTGCTTCATAGGAATAGGAAATTTGGAAAAAGTTGGCGAAACATAAATTTTGGAATAGCAAAATTTTTGTGGACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCATTTTGAGAATCCTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTGGCTTTATGGTTAATGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>357</pcr_amplicon_size>
		<canonical_amplicon>GGCATTTTGAGAATCCTTTTGATTAAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAGTTTTGAAGGGACGCAGACAGTTAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTTAAATCGTTGTATCTTGGCTCAAAATTGAGCTAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCTCAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCTTGAAACCCAATTCTTCTACTTACGAATACTCCAATTTCTTATTGTATCTCATTAACCATAAAGCCAC</canonical_amplicon>
		<polymorphic_amplicon>GGCATTTTGAGAATCCTTTTGATTAAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAGTTTTGAAGGGACGCAGACAGTTAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTTAAATCGTTGTATCTTGGCTCAAAATTGAGCTAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCTCAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCTTGAAACCCAATTCYTCTACTTACGAATACTCCAATTTCTTATTGTATCTCATTAACCATAAAGCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26943</snp_id>
        <super_contig>c002701403.Contig1</super_contig>
        <contig_pos>61375</contig_pos>
        <strand>+</strand>
        <context>TGAGTACGGT[A/G]CAAACTGCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATCTCATTAACCATAAAGCCACACAGAAATTGAATAAAGTGAGTACGGT</left_flank>
        <right_flank>CAAACTGCAAAGTATACTGTAGACCGTCTAGCGCTAGCTTTTGGAATCAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGTTTTTGAAATTTTAAGCTTAACCAAAAATTGCATTTCGGAAAAAATTTCAAAAGAAAATTTTTTTTTTGAAATTCTTAGAAAGTTTTGGGTTTTTATATTAACTAATTTCTGGCATTTTGAGAATCCTTTTGATTAAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAGTTTTGAAGGGACGCAGACAGTTAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTTAAATCGTTGTATCTTGGCTCAAAATTGAGCTAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCTCAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCTTGAAACCCAATTCTTCTACTTACGAATACTCCAATTTCTTATTGTATCTCATTAACCATAAAGCCACACAGAAATTGAATAAAGTGAGTACGGTGCAAACTGCAAAGTATACTGTAGACCGTCTAGCGCTAGCTTTTGGAATCATAAAACATCCCAAGACGGCCCCATCCAGCGGGTCATCAAATAATAGTAATGGACCAGTAATTCCACTAAAGAATAAAATGAAAAATAGAAGAATTAAAGAGTATTTGATGGATTTTTTGGATTTAAAATTTTTGGAAAAATTCGAAAAAAGGCGTTCAATAATCAGCCCAGTTTGTCCATAGATCATTCCAGATGTACAGAAGAGCATGAATTTATAAATTGGAGCACATTGAGCTTCGGTTTTCAGAAAATTAGAATCTCCGCGAAATTCCAGATTCTTCAAGACCAGAATCATTGCTTCATAGGAATAGGAAATTTGGAAAAAGTTGGCGAAACATAAATTTTGGAATAGCAAAATTTTTGTGGACCATTGGAATATTGATTTTGTCAAAATCAAATTTATCGCTGAGAATGTAGAGATAAGGGTTATCAGCGCGGCGAGGAGATCAAC</canonical>
            <polymorphic>AAAGTTTTTGAAATTTTAAGCTTAACCAAAAATTGCATTTCGGAAAAAATTTCAAAAGAAAATTTTTTTTTTGAAATTCTTAGAAAGTTTTGGGTTTTTATATTAACTAATTTCTGGCATTTTGAGAATCCTTTTGATTAAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAGTTTTGAAGGGACGCAGACAGTTAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTTAAATCGTTGTATCTTGGCTCAAAATTGAGCTAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCTCAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCTTGAAACCCAATTCTTCTACTTACGAATACTCCAATTTCTTATTGTATCTCATTAACCATAAAGCCACACAGAAATTGAATAAAGTGAGTACGGTRCAAACTGCAAAGTATACTGTAGACCGTCTAGCGCTAGCTTTTGGAATCATAAAACATCCCAAGACGGCCCCATCCAGCGGGTCATCAAATAATAGTAATGGACCAGTAATTCCACTAAAGAATAAAATGAAAAATAGAAGAATTAAAGAGTATTTGATGGATTTTTTGGATTTAAAATTTTTGGAAAAATTCGAAAAAAGGCGTTCAATAATCAGCCCAGTTTGTCCATAGATCATTCCAGATGTACAGAAGAGCATGAATTTATAAATTGGAGCACATTGAGCTTCGGTTTTCAGAAAATTAGAATCTCCGCGAAATTCCAGATTCTTCAAGACCAGAATCATTGCTTCATAGGAATAGGAAATTTGGAAAAAGTTGGCGAAACATAAATTTTGGAATAGCAAAATTTTTGTGGACCATTGGAATATTGATTTTGTCAAAATCAAATTTATCGCTGAGAATGTAGAGATAAGGGTTATCAGCGCGGCGAGGAGATCAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>493 465 35 7</canonical_bands>
                <polymorphic_bands>493 472 35</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>232 162 153 138 114 86 86 18 9 2</canonical_bands>
                <polymorphic_bands>232 162 153 138 123 86 86 18 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGAATACTCCAATTTCTTATTG</pcr_primer_p1>
		<pcr_primer_p2>TCCATCAAATACTCTTTAATTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>ACGAATACTCCAATTTCTTATTGTATCTCATTAACCATAAAGCCACACAGAAATTGAATAAAGTGAGTACGGTGCAAACTGCAAAGTATACTGTAGACCGTCTAGCGCTAGCTTTTGGAATCATAAAACATCCCAAGACGGCCCCATCCAGCGGGTCATCAAATAATAGTAATGGACCAGTAATTCCACTAAAGAATAAAATGAAAAATAGAAGAATTAAAGAGTATTTGATGGA</canonical_amplicon>
		<polymorphic_amplicon>ACGAATACTCCAATTTCTTATTGTATCTCATTAACCATAAAGCCACACAGAAATTGAATAAAGTGAGTACGGTRCAAACTGCAAAGTATACTGTAGACCGTCTAGCGCTAGCTTTTGGAATCATAAAACATCCCAAGACGGCCCCATCCAGCGGGTCATCAAATAATAGTAATGGACCAGTAATTCCACTAAAGAATAAAATGAAAAATAGAAGAATTAAAGAGTATTTGATGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26944</snp_id>
        <super_contig>c002701403.Contig1</super_contig>
        <contig_pos>61495</contig_pos>
        <strand>+</strand>
        <context>TTCCACTAAA[A/G]AATAAAATGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCATCCAGCGGGTCATCAAATAATAGTAATGGACCAGTAATTCCACTAAA</left_flank>
        <right_flank>AATAAAATGAAAAATAGAAGAATTAAAGAGTATTTGATGGATTTTTTGGA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAGAATCCTTTTGATTAAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAGTTTTGAAGGGACGCAGACAGTTAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTTAAATCGTTGTATCTTGGCTCAAAATTGAGCTAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCTCAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCTTGAAACCCAATTCTTCTACTTACGAATACTCCAATTTCTTATTGTATCTCATTAACCATAAAGCCACACAGAAATTGAATAAAGTGAGTACGGTGCAAACTGCAAAGTATACTGTAGACCGTCTAGCGCTAGCTTTTGGAATCATAAAACATCCCAAGACGGCCCCATCCAGCGGGTCATCAAATAATAGTAATGGACCAGTAATTCCACTAAAGAATAAAATGAAAAATAGAAGAATTAAAGAGTATTTGATGGATTTTTTGGATTTAAAATTTTTGGAAAAATTCGAAAAAAGGCGTTCAATAATCAGCCCAGTTTGTCCATAGATCATTCCAGATGTACAGAAGAGCATGAATTTATAAATTGGAGCACATTGAGCTTCGGTTTTCAGAAAATTAGAATCTCCGCGAAATTCCAGATTCTTCAAGACCAGAATCATTGCTTCATAGGAATAGGAAATTTGGAAAAAGTTGGCGAAACATAAATTTTGGAATAGCAAAATTTTTGTGGACCATTGGAATATTGATTTTGTCAAAATCAAATTTATCGCTGAGAATGTAGAGATAAGGGTTATCAGCGCGGCGAGGAGATCAACGATTTGGGAGATTAGAAAATTTGAGCTGAGCAATCGATCAATGTCGTCCGGGGTGGCGATGGTTAGGTTGGAGGCCATGGGATCTGGAAATTTTGGAGAGTTTGGGATTTTTGGGGAAGT</canonical>
            <polymorphic>TTTGAGAATCCTTTTGATTAAAAGTTCAGCGTTTTAACTCTTCTTAAAGCCGAGATACGGCTATTTGAAGTTTTGAAGGGACGCAGACAGTTAGAGTTAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAAACTTTAAATCGTTGTATCTTGGCTCAAAATTGAGCTAGAAAAGTCAACTTTTTTGGAAAGTGTAAGGAATTTCTCAGAAAATTTGAGAATATAAAAATTTTCTGACAAAAAACTCGGGAAAGTTCGAAAAAAGAGCTCCTAGATGACCTTGAAACCCAATTCTTCTACTTACGAATACTCCAATTTCTTATTGTATCTCATTAACCATAAAGCCACACAGAAATTGAATAAAGTGAGTACGGTGCAAACTGCAAAGTATACTGTAGACCGTCTAGCGCTAGCTTTTGGAATCATAAAACATCCCAAGACGGCCCCATCCAGCGGGTCATCAAATAATAGTAATGGACCAGTAATTCCACTAAARAATAAAATGAAAAATAGAAGAATTAAAGAGTATTTGATGGATTTTTTGGATTTAAAATTTTTGGAAAAATTCGAAAAAAGGCGTTCAATAATCAGCCCAGTTTGTCCATAGATCATTCCAGATGTACAGAAGAGCATGAATTTATAAATTGGAGCACATTGAGCTTCGGTTTTCAGAAAATTAGAATCTCCGCGAAATTCCAGATTCTTCAAGACCAGAATCATTGCTTCATAGGAATAGGAAATTTGGAAAAAGTTGGCGAAACATAAATTTTGGAATAGCAAAATTTTTGTGGACCATTGGAATATTGATTTTGTCAAAATCAAATTTATCGCTGAGAATGTAGAGATAAGGGTTATCAGCGCGGCGAGGAGATCAACGATTTGGGAGATTAGAAAATTTGAGCTGAGCAATCGATCAATGTCGTCCGGGGTGGCGATGGTTAGGTTGGAGGCCATGGGATCTGGAAATTTTGGAGAGTTTGGGATTTTTGGGGAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAAATTGAATAAAGTGAGTACG</pcr_primer_p1>
		<pcr_primer_p2>AAACTGGGCTGATTATTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGAAATTGAATAAAGTGAGTACGGTGCAAACTGCAAAGTATACTGTAGACCGTCTAGCGCTAGCTTTTGGAATCATAAAACATCCCAAGACGGCCCCATCCAGCGGGTCATCAAATAATAGTAATGGACCAGTAATTCCACTAAAGAATAAAATGAAAAATAGAAGAATTAAAGAGTATTTGATGGATTTTTTGGATTTAAAATTTTTGGAAAAATTCGAAAAAAGGCGTTCAATAATCAGCCCAGTTT</canonical_amplicon>
		<polymorphic_amplicon>CAGAAATTGAATAAAGTGAGTACGGTGCAAACTGCAAAGTATACTGTAGACCGTCTAGCGCTAGCTTTTGGAATCATAAAACATCCCAAGACGGCCCCATCCAGCGGGTCATCAAATAATAGTAATGGACCAGTAATTCCACTAAARAATAAAATGAAAAATAGAAGAATTAAAGAGTATTTGATGGATTTTTTGGATTTAAAATTTTTGGAAAAATTCGAAAAAAGGCGTTCAATAATCAGCCCAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26945</snp_id>
        <super_contig>c002701403.Contig1</super_contig>
        <contig_pos>67968</contig_pos>
        <strand>+</strand>
        <context>GTATCGTTTC[G/T]WTGTCTCAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGAANNNNNNNNNNAGCCATCGACTCCACACATACGATTTGTATCGTTTC</left_flank>
        <right_flank>TTGTCTCAATTCATTTTAACACTTTCTTATTCTCTGGGTCTCCTATTGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCTAAACTTCAAGCAGCTGTATCTCGACGCTTAGTGGTCCGTTTTGACTGGTTTTTCCACGAAAATACCTAACATTGCTTGGTTAACCCAATGATACCAAGTTTGACAAGTTTTTGAGAAATTCGAAAAATCCAATTTTGTAATTTTTCAAATATTTATGAATTCGGAATATTTTCGACAAAATTCCATCAATCTCTGTAAAATTGTTATGTCTCTAGGACATGTAGAAGATGAGATATAGTCATTAGAAGTTTAGGAGGTTAGAGACGCAGCGTGTCTCGTCGTCTGCGTCTCTAGCCTTCAAAACTTCAAACGCCTGTATCTCCACTCCTAGATGAGCTAGAAACTTGATTCTTGATCCAAAATGTGTAAAATGTCAAGAATTTTAAGTGGAGCACACTTTTTGCTCACCTCTCAAAAATTTTCCAGAATCCGCTACAAACTACGCGAANNNNNNNNNNAGCCATCGACTCCACACATACGATTTGTATCGTTTCTTTGTCTCAATTCATTTTAACACTTTCTTATTCTCTGGGTCTCCTATTGCTCAGGTGTAACATAAATCAAATGCAAATTTCCACATTTTTGGCACTGGTTGTGTGGATTTATGTGAGTTTTTGGGGGTTTTAGGCAGAAAAAATGTCGAAAATCATGAAAAATAGGTCCTAAACTCCAAAAAATGATTAAAACACTCTTAAACAAAGAAATCAAGAAATTCTCAATAGAGCGCATTTTCATATATCCCTCAATGTTGGTCCAAAATTGATGAAAATTATACAAAAACGCTTGAAATTCAATTTCTCAAATTTTGATATACTTTTTCATAATTTGGACAAAGCATGAAGAAAAAATGCAAATGCGCTCCAATGAGAATTTTCAAAAAAGTTCAAAAAATCGATATTTTCTTGGAAATTTTTGATGTTCACTAGGTTCGGAGCGTTTTGAGATGTTCATTCCATGAATTGTCAATGGAGCGCATTTGGAAACCTTGAATTAAA</canonical>
            <polymorphic>CTCCTAAACTTCAAGCAGCTGTATCTCGACGCTTAGTGGTCCGTTTTGACTGGTTTTTCCACGAAAATACCTAACATTGCTTGGTTAACCCAATGATACCAAGTTTGACAAGTTTTTGAGAAATTCGAAAAATCCAATTTTGTAATTTTTCAAATATTTATGAATTCGGAATATTTTCGACAAAATTCCATCAATCTCTGTAAAATTGTTATGTCTCTAGGACATGTAGAAGATGAGATATAGTCATTAGAAGTTTAGGAGGTTAGAGACGCAGCGTGTCTCGTCGTCTGCGTCTCTAGCCTTCAAAACTTCAAACGCCTGTATCTCCACTCCTAGATGAGCTAGAAACTTGATTCTTGATCCAAAATGTGTAAAATGTCAAGAATTTTAAGTGGAGCACACTTTTTGCTCACCTCTCAAAAATTTTCCAGAATCCGCTACAAACTACGCGAANNNNNNNNNNAGCCATCGACTCCACACATACGATTTGTATCGTTTCKTTGTCTCAATTCATTTTAACACTTTCTTATTCTCTGGGTCTCCTATTGCTCAGGTGTAACATAAATCAAATGCAAATTTCCACATTTTTGGCACTGGTTGTGTGGATTTATGTGAGTTTTTGGGGGTTTTAGGCAGAAAAAATGTCGAAAATCATGAAAAATAGGTCCTAAACTCCAAAAAATGATTAAAACACTCTTAAACAAAGAAATCAAGAAATTCTCAATAGAGCGCATTTTCATATATCCCTCAATGTTGGTCCAAAATTGATGAAAATTATACAAAAACGCTTGAAATTCAATTTCTCAAATTTTGATATACTTTTTCATAATTTGGACAAAGCATGAAGAAAAAATGCAAATGCGCTCCAATGAGAATTTTCAAAAAAGTTCAAAAAATCGATATTTTCTTGGAAATTTTTGATGTTCACTAGGTTCGGAGCGTTTTGAGATGTTCATTCCATGAATTGTCAATGGAGCGCATTTGGAAACCTTGAATTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAATTTTAAGTGGAGCACAC</pcr_primer_p1>
		<pcr_primer_p2>CAAAAACTCACATAAATCCACAC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AAGAATTTTAAGTGGAGCACACTTTTTGCTCACCTCTCAAAAATTTTCCAGAATCCGCTACAAACTACGCGAANNNNNNNNNNAGCCATCGACTCCACACATACGATTTGTATCGTTTCTTTGTCTCAATTCATTTTAACACTTTCTTATTCTCTGGGTCTCCTATTGCTCAGGTGTAACATAAATCAAATGCAAATTTCCACATTTTTGGCACTGGTTGTGTGGATTTATGTGAGTTTTTG</canonical_amplicon>
		<polymorphic_amplicon>AAGAATTTTAAGTGGAGCACACTTTTTGCTCACCTCTCAAAAATTTTCCAGAATCCGCTACAAACTACGCGAANNNNNNNNNNAGCCATCGACTCCACACATACGATTTGTATCGTTTCKTTGTCTCAATTCATTTTAACACTTTCTTATTCTCTGGGTCTCCTATTGCTCAGGTGTAACATAAATCAAATGCAAATTTCCACATTTTTGGCACTGGTTGTGTGGATTTATGTGAGTTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26946</snp_id>
        <super_contig>c002701403.Contig1</super_contig>
        <contig_pos>67969</contig_pos>
        <strand>+</strand>
        <context>TATCGTTTCK[A/T]TGTCTCAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAANNNNNNNNNNAGCCATCGACTCCACACATACGATTTGTATCGTTTCT</left_flank>
        <right_flank>TGTCTCAATTCATTTTAACACTTTCTTATTCTCTGGGTCTCCTATTGCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTAAACTTCAAGCAGCTGTATCTCGACGCTTAGTGGTCCGTTTTGACTGGTTTTTCCACGAAAATACCTAACATTGCTTGGTTAACCCAATGATACCAAGTTTGACAAGTTTTTGAGAAATTCGAAAAATCCAATTTTGTAATTTTTCAAATATTTATGAATTCGGAATATTTTCGACAAAATTCCATCAATCTCTGTAAAATTGTTATGTCTCTAGGACATGTAGAAGATGAGATATAGTCATTAGAAGTTTAGGAGGTTAGAGACGCAGCGTGTCTCGTCGTCTGCGTCTCTAGCCTTCAAAACTTCAAACGCCTGTATCTCCACTCCTAGATGAGCTAGAAACTTGATTCTTGATCCAAAATGTGTAAAATGTCAAGAATTTTAAGTGGAGCACACTTTTTGCTCACCTCTCAAAAATTTTCCAGAATCCGCTACAAACTACGCGAANNNNNNNNNNAGCCATCGACTCCACACATACGATTTGTATCGTTTCTTTGTCTCAATTCATTTTAACACTTTCTTATTCTCTGGGTCTCCTATTGCTCAGGTGTAACATAAATCAAATGCAAATTTCCACATTTTTGGCACTGGTTGTGTGGATTTATGTGAGTTTTTGGGGGTTTTAGGCAGAAAAAATGTCGAAAATCATGAAAAATAGGTCCTAAACTCCAAAAAATGATTAAAACACTCTTAAACAAAGAAATCAAGAAATTCTCAATAGAGCGCATTTTCATATATCCCTCAATGTTGGTCCAAAATTGATGAAAATTATACAAAAACGCTTGAAATTCAATTTCTCAAATTTTGATATACTTTTTCATAATTTGGACAAAGCATGAAGAAAAAATGCAAATGCGCTCCAATGAGAATTTTCAAAAAAGTTCAAAAAATCGATATTTTCTTGGAAATTTTTGATGTTCACTAGGTTCGGAGCGTTTTGAGATGTTCATTCCATGAATTGTCAATGGAGCGCATTTGGAAACCTTGAATTAAAA</canonical>
            <polymorphic>TCCTAAACTTCAAGCAGCTGTATCTCGACGCTTAGTGGTCCGTTTTGACTGGTTTTTCCACGAAAATACCTAACATTGCTTGGTTAACCCAATGATACCAAGTTTGACAAGTTTTTGAGAAATTCGAAAAATCCAATTTTGTAATTTTTCAAATATTTATGAATTCGGAATATTTTCGACAAAATTCCATCAATCTCTGTAAAATTGTTATGTCTCTAGGACATGTAGAAGATGAGATATAGTCATTAGAAGTTTAGGAGGTTAGAGACGCAGCGTGTCTCGTCGTCTGCGTCTCTAGCCTTCAAAACTTCAAACGCCTGTATCTCCACTCCTAGATGAGCTAGAAACTTGATTCTTGATCCAAAATGTGTAAAATGTCAAGAATTTTAAGTGGAGCACACTTTTTGCTCACCTCTCAAAAATTTTCCAGAATCCGCTACAAACTACGCGAANNNNNNNNNNAGCCATCGACTCCACACATACGATTTGTATCGTTTCTWTGTCTCAATTCATTTTAACACTTTCTTATTCTCTGGGTCTCCTATTGCTCAGGTGTAACATAAATCAAATGCAAATTTCCACATTTTTGGCACTGGTTGTGTGGATTTATGTGAGTTTTTGGGGGTTTTAGGCAGAAAAAATGTCGAAAATCATGAAAAATAGGTCCTAAACTCCAAAAAATGATTAAAACACTCTTAAACAAAGAAATCAAGAAATTCTCAATAGAGCGCATTTTCATATATCCCTCAATGTTGGTCCAAAATTGATGAAAATTATACAAAAACGCTTGAAATTCAATTTCTCAAATTTTGATATACTTTTTCATAATTTGGACAAAGCATGAAGAAAAAATGCAAATGCGCTCCAATGAGAATTTTCAAAAAAGTTCAAAAAATCGATATTTTCTTGGAAATTTTTGATGTTCACTAGGTTCGGAGCGTTTTGAGATGTTCATTCCATGAATTGTCAATGGAGCGCATTTGGAAACCTTGAATTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAATTTTAAGTGGAGCACAC</pcr_primer_p1>
		<pcr_primer_p2>CAAAAACTCACATAAATCCACAC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AAGAATTTTAAGTGGAGCACACTTTTTGCTCACCTCTCAAAAATTTTCCAGAATCCGCTACAAACTACGCGAANNNNNNNNNNAGCCATCGACTCCACACATACGATTTGTATCGTTTCTTTGTCTCAATTCATTTTAACACTTTCTTATTCTCTGGGTCTCCTATTGCTCAGGTGTAACATAAATCAAATGCAAATTTCCACATTTTTGGCACTGGTTGTGTGGATTTATGTGAGTTTTTG</canonical_amplicon>
		<polymorphic_amplicon>AAGAATTTTAAGTGGAGCACACTTTTTGCTCACCTCTCAAAAATTTTCCAGAATCCGCTACAAACTACGCGAANNNNNNNNNNAGCCATCGACTCCACACATACGATTTGTATCGTTTCTWTGTCTCAATTCATTTTAACACTTTCTTATTCTCTGGGTCTCCTATTGCTCAGGTGTAACATAAATCAAATGCAAATTTCCACATTTTTGGCACTGGTTGTGTGGATTTATGTGAGTTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26947</snp_id>
        <super_contig>c002701403.Contig1</super_contig>
        <contig_pos>67992</contig_pos>
        <strand>+</strand>
        <context>TTTTAACACT[C/T]TCTTATTCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCACACATACGATTTGTATCGTTTCTTTGTCTCAATTCATTTTAACACT</left_flank>
        <right_flank>TCTTATTCTCTGGGTCTCCTATTGCTCAGGTGTAACATAAATCAAATGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGACGCTTAGTGGTCCGTTTTGACTGGTTTTTCCACGAAAATACCTAACATTGCTTGGTTAACCCAATGATACCAAGTTTGACAAGTTTTTGAGAAATTCGAAAAATCCAATTTTGTAATTTTTCAAATATTTATGAATTCGGAATATTTTCGACAAAATTCCATCAATCTCTGTAAAATTGTTATGTCTCTAGGACATGTAGAAGATGAGATATAGTCATTAGAAGTTTAGGAGGTTAGAGACGCAGCGTGTCTCGTCGTCTGCGTCTCTAGCCTTCAAAACTTCAAACGCCTGTATCTCCACTCCTAGATGAGCTAGAAACTTGATTCTTGATCCAAAATGTGTAAAATGTCAAGAATTTTAAGTGGAGCACACTTTTTGCTCACCTCTCAAAAATTTTCCAGAATCCGCTACAAACTACGCGAANNNNNNNNNNAGCCATCGACTCCACACATACGATTTGTATCGTTTCTTTGTCTCAATTCATTTTAACACTTTCTTATTCTCTGGGTCTCCTATTGCTCAGGTGTAACATAAATCAAATGCAAATTTCCACATTTTTGGCACTGGTTGTGTGGATTTATGTGAGTTTTTGGGGGTTTTAGGCAGAAAAAATGTCGAAAATCATGAAAAATAGGTCCTAAACTCCAAAAAATGATTAAAACACTCTTAAACAAAGAAATCAAGAAATTCTCAATAGAGCGCATTTTCATATATCCCTCAATGTTGGTCCAAAATTGATGAAAATTATACAAAAACGCTTGAAATTCAATTTCTCAAATTTTGATATACTTTTTCATAATTTGGACAAAGCATGAAGAAAAAATGCAAATGCGCTCCAATGAGAATTTTCAAAAAAGTTCAAAAAATCGATATTTTCTTGGAAATTTTTGATGTTCACTAGGTTCGGAGCGTTTTGAGATGTTCATTCCATGAATTGTCAATGGAGCGCATTTGGAAACCTTGAATTAAAAAAAAATAATGTTTGCAGACCGTT</canonical>
            <polymorphic>CTCGACGCTTAGTGGTCCGTTTTGACTGGTTTTTCCACGAAAATACCTAACATTGCTTGGTTAACCCAATGATACCAAGTTTGACAAGTTTTTGAGAAATTCGAAAAATCCAATTTTGTAATTTTTCAAATATTTATGAATTCGGAATATTTTCGACAAAATTCCATCAATCTCTGTAAAATTGTTATGTCTCTAGGACATGTAGAAGATGAGATATAGTCATTAGAAGTTTAGGAGGTTAGAGACGCAGCGTGTCTCGTCGTCTGCGTCTCTAGCCTTCAAAACTTCAAACGCCTGTATCTCCACTCCTAGATGAGCTAGAAACTTGATTCTTGATCCAAAATGTGTAAAATGTCAAGAATTTTAAGTGGAGCACACTTTTTGCTCACCTCTCAAAAATTTTCCAGAATCCGCTACAAACTACGCGAANNNNNNNNNNAGCCATCGACTCCACACATACGATTTGTATCGTTTCTTTGTCTCAATTCATTTTAACACTYTCTTATTCTCTGGGTCTCCTATTGCTCAGGTGTAACATAAATCAAATGCAAATTTCCACATTTTTGGCACTGGTTGTGTGGATTTATGTGAGTTTTTGGGGGTTTTAGGCAGAAAAAATGTCGAAAATCATGAAAAATAGGTCCTAAACTCCAAAAAATGATTAAAACACTCTTAAACAAAGAAATCAAGAAATTCTCAATAGAGCGCATTTTCATATATCCCTCAATGTTGGTCCAAAATTGATGAAAATTATACAAAAACGCTTGAAATTCAATTTCTCAAATTTTGATATACTTTTTCATAATTTGGACAAAGCATGAAGAAAAAATGCAAATGCGCTCCAATGAGAATTTTCAAAAAAGTTCAAAAAATCGATATTTTCTTGGAAATTTTTGATGTTCACTAGGTTCGGAGCGTTTTGAGATGTTCATTCCATGAATTGTCAATGGAGCGCATTTGGAAACCTTGAATTAAAAAAAAATAATGTTTGCAGACCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAATTTTAAGTGGAGCACAC</pcr_primer_p1>
		<pcr_primer_p2>CAAAAACTCACATAAATCCACAC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AAGAATTTTAAGTGGAGCACACTTTTTGCTCACCTCTCAAAAATTTTCCAGAATCCGCTACAAACTACGCGAANNNNNNNNNNAGCCATCGACTCCACACATACGATTTGTATCGTTTCTTTGTCTCAATTCATTTTAACACTTTCTTATTCTCTGGGTCTCCTATTGCTCAGGTGTAACATAAATCAAATGCAAATTTCCACATTTTTGGCACTGGTTGTGTGGATTTATGTGAGTTTTTG</canonical_amplicon>
		<polymorphic_amplicon>AAGAATTTTAAGTGGAGCACACTTTTTGCTCACCTCTCAAAAATTTTCCAGAATCCGCTACAAACTACGCGAANNNNNNNNNNAGCCATCGACTCCACACATACGATTTGTATCGTTTCTTTGTCTCAATTCATTTTAACACTYTCTTATTCTCTGGGTCTCCTATTGCTCAGGTGTAACATAAATCAAATGCAAATTTCCACATTTTTGGCACTGGTTGTGTGGATTTATGTGAGTTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26948</snp_id>
        <super_contig>c002701403.Contig1</super_contig>
        <contig_pos>68042</contig_pos>
        <strand>+</strand>
        <context>AATCAAATGC[A/T]AATTTCCACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCTTATTCTCTGGGTCTCCTATTGCTCAGGTGTAACATAAATCAAATGC</left_flank>
        <right_flank>AATTTCCACATTTTTGGCACTGGTTGTGTGGATTTATGTGAGTTTTTGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTGCTTGGTTAACCCAATGATACCAAGTTTGACAAGTTTTTGAGAAATTCGAAAAATCCAATTTTGTAATTTTTCAAATATTTATGAATTCGGAATATTTTCGACAAAATTCCATCAATCTCTGTAAAATTGTTATGTCTCTAGGACATGTAGAAGATGAGATATAGTCATTAGAAGTTTAGGAGGTTAGAGACGCAGCGTGTCTCGTCGTCTGCGTCTCTAGCCTTCAAAACTTCAAACGCCTGTATCTCCACTCCTAGATGAGCTAGAAACTTGATTCTTGATCCAAAATGTGTAAAATGTCAAGAATTTTAAGTGGAGCACACTTTTTGCTCACCTCTCAAAAATTTTCCAGAATCCGCTACAAACTACGCGAANNNNNNNNNNAGCCATCGACTCCACACATACGATTTGTATCGTTTCTTTGTCTCAATTCATTTTAACACTTTCTTATTCTCTGGGTCTCCTATTGCTCAGGTGTAACATAAATCAAATGCAAATTTCCACATTTTTGGCACTGGTTGTGTGGATTTATGTGAGTTTTTGGGGGTTTTAGGCAGAAAAAATGTCGAAAATCATGAAAAATAGGTCCTAAACTCCAAAAAATGATTAAAACACTCTTAAACAAAGAAATCAAGAAATTCTCAATAGAGCGCATTTTCATATATCCCTCAATGTTGGTCCAAAATTGATGAAAATTATACAAAAACGCTTGAAATTCAATTTCTCAAATTTTGATATACTTTTTCATAATTTGGACAAAGCATGAAGAAAAAATGCAAATGCGCTCCAATGAGAATTTTCAAAAAAGTTCAAAAAATCGATATTTTCTTGGAAATTTTTGATGTTCACTAGGTTCGGAGCGTTTTGAGATGTTCATTCCATGAATTGTCAATGGAGCGCATTTGGAAACCTTGAATTAAAAAAAAATAATGTTTGCAGACCGTTCCCTACAGTGCGCTTCTTTTTCCGGTGATTCTGATCTTCAGAATCCGTGC</canonical>
            <polymorphic>CATTGCTTGGTTAACCCAATGATACCAAGTTTGACAAGTTTTTGAGAAATTCGAAAAATCCAATTTTGTAATTTTTCAAATATTTATGAATTCGGAATATTTTCGACAAAATTCCATCAATCTCTGTAAAATTGTTATGTCTCTAGGACATGTAGAAGATGAGATATAGTCATTAGAAGTTTAGGAGGTTAGAGACGCAGCGTGTCTCGTCGTCTGCGTCTCTAGCCTTCAAAACTTCAAACGCCTGTATCTCCACTCCTAGATGAGCTAGAAACTTGATTCTTGATCCAAAATGTGTAAAATGTCAAGAATTTTAAGTGGAGCACACTTTTTGCTCACCTCTCAAAAATTTTCCAGAATCCGCTACAAACTACGCGAANNNNNNNNNNAGCCATCGACTCCACACATACGATTTGTATCGTTTCTTTGTCTCAATTCATTTTAACACTTTCTTATTCTCTGGGTCTCCTATTGCTCAGGTGTAACATAAATCAAATGCWAATTTCCACATTTTTGGCACTGGTTGTGTGGATTTATGTGAGTTTTTGGGGGTTTTAGGCAGAAAAAATGTCGAAAATCATGAAAAATAGGTCCTAAACTCCAAAAAATGATTAAAACACTCTTAAACAAAGAAATCAAGAAATTCTCAATAGAGCGCATTTTCATATATCCCTCAATGTTGGTCCAAAATTGATGAAAATTATACAAAAACGCTTGAAATTCAATTTCTCAAATTTTGATATACTTTTTCATAATTTGGACAAAGCATGAAGAAAAAATGCAAATGCGCTCCAATGAGAATTTTCAAAAAAGTTCAAAAAATCGATATTTTCTTGGAAATTTTTGATGTTCACTAGGTTCGGAGCGTTTTGAGATGTTCATTCCATGAATTGTCAATGGAGCGCATTTGGAAACCTTGAATTAAAAAAAAATAATGTTTGCAGACCGTTCCCTACAGTGCGCTTCTTTTTCCGGTGATTCTGATCTTCAGAATCCGTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>200 162 153 141 77 67 47 41 39 38 21 14</canonical_bands>
                <polymorphic_bands>294 200 162 77 67 47 41 39 38 21 14</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>498 283 160 59</canonical_bands>
                <polymorphic_bands>781 160 59</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCGACTCCACACATACGAT</pcr_primer_p1>
		<pcr_primer_p2>TCTTGATTTCTTTGTTTAAGAGTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATCGACTCCACACATACGATTTGTATCGTTTCTTTGTCTCAATTCATTTTAACACTTTCTTATTCTCTGGGTCTCCTATTGCTCAGGTGTAACATAAATCAAATGCAAATTTCCACATTTTTGGCACTGGTTGTGTGGATTTATGTGAGTTTTTGGGGGTTTTAGGCAGAAAAAATGTCGAAAATCATGAAAAATAGGTCCTAAACTCCAAAAAATGATTAAAACACTCTTAAACAAAGAAATCAAGA</canonical_amplicon>
		<polymorphic_amplicon>ATCGACTCCACACATACGATTTGTATCGTTTCTTTGTCTCAATTCATTTTAACACTTTCTTATTCTCTGGGTCTCCTATTGCTCAGGTGTAACATAAATCAAATGCWAATTTCCACATTTTTGGCACTGGTTGTGTGGATTTATGTGAGTTTTTGGGGGTTTTAGGCAGAAAAAATGTCGAAAATCATGAAAAATAGGTCCTAAACTCCAAAAAATGATTAAAACACTCTTAAACAAAGAAATCAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26949</snp_id>
        <super_contig>c002701403.Contig1</super_contig>
        <contig_pos>68133</contig_pos>
        <strand>+</strand>
        <context>TGAAAAATAG[A/G]TCCTAAACTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTTTTGGGGGTTTTAGGCAGAAAAAATGTCGAAAATCATGAAAAATAG</left_flank>
        <right_flank>TCCTAAACTCCAAAAAATGATTAAAACACTCTTAAACAAAGAAATCAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGGAATATTTTCGACAAAATTCCATCAATCTCTGTAAAATTGTTATGTCTCTAGGACATGTAGAAGATGAGATATAGTCATTAGAAGTTTAGGAGGTTAGAGACGCAGCGTGTCTCGTCGTCTGCGTCTCTAGCCTTCAAAACTTCAAACGCCTGTATCTCCACTCCTAGATGAGCTAGAAACTTGATTCTTGATCCAAAATGTGTAAAATGTCAAGAATTTTAAGTGGAGCACACTTTTTGCTCACCTCTCAAAAATTTTCCAGAATCCGCTACAAACTACGCGAANNNNNNNNNNAGCCATCGACTCCACACATACGATTTGTATCGTTTCTTTGTCTCAATTCATTTTAACACTTTCTTATTCTCTGGGTCTCCTATTGCTCAGGTGTAACATAAATCAAATGCAAATTTCCACATTTTTGGCACTGGTTGTGTGGATTTATGTGAGTTTTTGGGGGTTTTAGGCAGAAAAAATGTCGAAAATCATGAAAAATAGGTCCTAAACTCCAAAAAATGATTAAAACACTCTTAAACAAAGAAATCAAGAAATTCTCAATAGAGCGCATTTTCATATATCCCTCAATGTTGGTCCAAAATTGATGAAAATTATACAAAAACGCTTGAAATTCAATTTCTCAAATTTTGATATACTTTTTCATAATTTGGACAAAGCATGAAGAAAAAATGCAAATGCGCTCCAATGAGAATTTTCAAAAAAGTTCAAAAAATCGATATTTTCTTGGAAATTTTTGATGTTCACTAGGTTCGGAGCGTTTTGAGATGTTCATTCCATGAATTGTCAATGGAGCGCATTTGGAAACCTTGAATTAAAAAAAAATAATGTTTGCAGACCGTTCCCTACAGTGCGCTTCTTTTTCCGGTGATTCTGATCTTCAGAATCCGTGCGACAAAAGTTTTGAGGACTCGAAAGATTCAAGATATCACGACCATCCAAACGGACCATATCGAACAGATTCAGAATATTTGGAACACTTCG</canonical>
            <polymorphic>TCGGAATATTTTCGACAAAATTCCATCAATCTCTGTAAAATTGTTATGTCTCTAGGACATGTAGAAGATGAGATATAGTCATTAGAAGTTTAGGAGGTTAGAGACGCAGCGTGTCTCGTCGTCTGCGTCTCTAGCCTTCAAAACTTCAAACGCCTGTATCTCCACTCCTAGATGAGCTAGAAACTTGATTCTTGATCCAAAATGTGTAAAATGTCAAGAATTTTAAGTGGAGCACACTTTTTGCTCACCTCTCAAAAATTTTCCAGAATCCGCTACAAACTACGCGAANNNNNNNNNNAGCCATCGACTCCACACATACGATTTGTATCGTTTCTTTGTCTCAATTCATTTTAACACTTTCTTATTCTCTGGGTCTCCTATTGCTCAGGTGTAACATAAATCAAATGCAAATTTCCACATTTTTGGCACTGGTTGTGTGGATTTATGTGAGTTTTTGGGGGTTTTAGGCAGAAAAAATGTCGAAAATCATGAAAAATAGRTCCTAAACTCCAAAAAATGATTAAAACACTCTTAAACAAAGAAATCAAGAAATTCTCAATAGAGCGCATTTTCATATATCCCTCAATGTTGGTCCAAAATTGATGAAAATTATACAAAAACGCTTGAAATTCAATTTCTCAAATTTTGATATACTTTTTCATAATTTGGACAAAGCATGAAGAAAAAATGCAAATGCGCTCCAATGAGAATTTTCAAAAAAGTTCAAAAAATCGATATTTTCTTGGAAATTTTTGATGTTCACTAGGTTCGGAGCGTTTTGAGATGTTCATTCCATGAATTGTCAATGGAGCGCATTTGGAAACCTTGAATTAAAAAAAAATAATGTTTGCAGACCGTTCCCTACAGTGCGCTTCTTTTTCCGGTGATTCTGATCTTCAGAATCCGTGCGACAAAAGTTTTGAGGACTCGAAAGATTCAAGATATCACGACCATCCAAACGGACCATATCGAACAGATTCAGAATATTTGGAACACTTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>499 370 92 39</canonical_bands>
                <polymorphic_bands>591 370 39</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>499 370 92 39</canonical_bands>
                <polymorphic_bands>591 370 39</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AGGWCCT</site>
                <isoschizomers>
                    <enzyme>Sse8647I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGCTCAGGTGTAACATAAATC</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAGCGTTTTTGTATAATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTGCTCAGGTGTAACATAAATCAAATGCAAATTTCCACATTTTTGGCACTGGTTGTGTGGATTTATGTGAGTTTTTGGGGGTTTTAGGCAGAAAAAATGTCGAAAATCATGAAAAATAGGTCCTAAACTCCAAAAAATGATTAAAACACTCTTAAACAAAGAAATCAAGAAATTCTCAATAGAGCGCATTTTCATATATCCCTCAATGTTGGTCCAAAATTGATGAAAATTATACAAAAACGCTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTGCTCAGGTGTAACATAAATCAAATGCAAATTTCCACATTTTTGGCACTGGTTGTGTGGATTTATGTGAGTTTTTGGGGGTTTTAGGCAGAAAAAATGTCGAAAATCATGAAAAATAGRTCCTAAACTCCAAAAAATGATTAAAACACTCTTAAACAAAGAAATCAAGAAATTCTCAATAGAGCGCATTTTCATATATCCCTCAATGTTGGTCCAAAATTGATGAAAATTATACAAAAACGCTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26950</snp_id>
        <super_contig>c002701403.Contig1</super_contig>
        <contig_pos>68210</contig_pos>
        <strand>+</strand>
        <context>CATTTTCATA[C/T]ATCCCTCAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACTCTTAAACAAAGAAATCAAGAAATTCTCAATAGAGCGCATTTTCATA</left_flank>
        <right_flank>ATCCCTCAATGTTGGTCCAAAATTGATGAAAATTATACAAAAACGCTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCATTAGAAGTTTAGGAGGTTAGAGACGCAGCGTGTCTCGTCGTCTGCGTCTCTAGCCTTCAAAACTTCAAACGCCTGTATCTCCACTCCTAGATGAGCTAGAAACTTGATTCTTGATCCAAAATGTGTAAAATGTCAAGAATTTTAAGTGGAGCACACTTTTTGCTCACCTCTCAAAAATTTTCCAGAATCCGCTACAAACTACGCGAANNNNNNNNNNAGCCATCGACTCCACACATACGATTTGTATCGTTTCTTTGTCTCAATTCATTTTAACACTTTCTTATTCTCTGGGTCTCCTATTGCTCAGGTGTAACATAAATCAAATGCAAATTTCCACATTTTTGGCACTGGTTGTGTGGATTTATGTGAGTTTTTGGGGGTTTTAGGCAGAAAAAATGTCGAAAATCATGAAAAATAGGTCCTAAACTCCAAAAAATGATTAAAACACTCTTAAACAAAGAAATCAAGAAATTCTCAATAGAGCGCATTTTCATATATCCCTCAATGTTGGTCCAAAATTGATGAAAATTATACAAAAACGCTTGAAATTCAATTTCTCAAATTTTGATATACTTTTTCATAATTTGGACAAAGCATGAAGAAAAAATGCAAATGCGCTCCAATGAGAATTTTCAAAAAAGTTCAAAAAATCGATATTTTCTTGGAAATTTTTGATGTTCACTAGGTTCGGAGCGTTTTGAGATGTTCATTCCATGAATTGTCAATGGAGCGCATTTGGAAACCTTGAATTAAAAAAAAATAATGTTTGCAGACCGTTCCCTACAGTGCGCTTCTTTTTCCGGTGATTCTGATCTTCAGAATCCGTGCGACAAAAGTTTTGAGGACTCGAAAGATTCAAGATATCACGACCATCCAAACGGACCATATCGAACAGATTCAGAATATTTGGAACACTTCGAATTTTTGAAAAAATTACAAAAAATGTTGTGCCAAAAAATTTTTTGAGCAATCTAGATCCATCTAGAAGCCTCTAGA</canonical>
            <polymorphic>GTCATTAGAAGTTTAGGAGGTTAGAGACGCAGCGTGTCTCGTCGTCTGCGTCTCTAGCCTTCAAAACTTCAAACGCCTGTATCTCCACTCCTAGATGAGCTAGAAACTTGATTCTTGATCCAAAATGTGTAAAATGTCAAGAATTTTAAGTGGAGCACACTTTTTGCTCACCTCTCAAAAATTTTCCAGAATCCGCTACAAACTACGCGAANNNNNNNNNNAGCCATCGACTCCACACATACGATTTGTATCGTTTCTTTGTCTCAATTCATTTTAACACTTTCTTATTCTCTGGGTCTCCTATTGCTCAGGTGTAACATAAATCAAATGCAAATTTCCACATTTTTGGCACTGGTTGTGTGGATTTATGTGAGTTTTTGGGGGTTTTAGGCAGAAAAAATGTCGAAAATCATGAAAAATAGGTCCTAAACTCCAAAAAATGATTAAAACACTCTTAAACAAAGAAATCAAGAAATTCTCAATAGAGCGCATTTTCATAYATCCCTCAATGTTGGTCCAAAATTGATGAAAATTATACAAAAACGCTTGAAATTCAATTTCTCAAATTTTGATATACTTTTTCATAATTTGGACAAAGCATGAAGAAAAAATGCAAATGCGCTCCAATGAGAATTTTCAAAAAAGTTCAAAAAATCGATATTTTCTTGGAAATTTTTGATGTTCACTAGGTTCGGAGCGTTTTGAGATGTTCATTCCATGAATTGTCAATGGAGCGCATTTGGAAACCTTGAATTAAAAAAAAATAATGTTTGCAGACCGTTCCCTACAGTGCGCTTCTTTTTCCGGTGATTCTGATCTTCAGAATCCGTGCGACAAAAGTTTTGAGGACTCGAAAGATTCAAGATATCACGACCATCCAAACGGACCATATCGAACAGATTCAGAATATTTGGAACACTTCGAATTTTTGAAAAAATTACAAAAAATGTTGTGCCAAAAAATTTTTTGAGCAATCTAGATCCATCTAGAAGCCTCTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGCTCAGGTGTAACATAAATC</pcr_primer_p1>
		<pcr_primer_p2>AATTTCAAGCGTTTTTGTATAAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTGCTCAGGTGTAACATAAATCAAATGCAAATTTCCACATTTTTGGCACTGGTTGTGTGGATTTATGTGAGTTTTTGGGGGTTTTAGGCAGAAAAAATGTCGAAAATCATGAAAAATAGGTCCTAAACTCCAAAAAATGATTAAAACACTCTTAAACAAAGAAATCAAGAAATTCTCAATAGAGCGCATTTTCATATATCCCTCAATGTTGGTCCAAAATTGATGAAAATTATACAAAAACGCTTGAAATT</canonical_amplicon>
		<polymorphic_amplicon>ATTGCTCAGGTGTAACATAAATCAAATGCAAATTTCCACATTTTTGGCACTGGTTGTGTGGATTTATGTGAGTTTTTGGGGGTTTTAGGCAGAAAAAATGTCGAAAATCATGAAAAATAGGTCCTAAACTCCAAAAAATGATTAAAACACTCTTAAACAAAGAAATCAAGAAATTCTCAATAGAGCGCATTTTCATAYATCCCTCAATGTTGGTCCAAAATTGATGAAAATTATACAAAAACGCTTGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26951</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>1514</contig_pos>
        <strand></strand>
        <context>aaaaagtgct[T/C]aactgataaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AACTTTGAGCTCTATTATCTTACTTCCTGTAACAGATATTAAAAAGTGCT</left_flank>
        <right_flank>AACTGATAAATTGTTTATCATGATATCAGCTACATTTTATTAGTTGACAC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCTTTTTATTAGCTACATTTTATCAGTTGATCACTTTTTGATATCTCTAACAGGGACCCACATAATTTAGATCAAAGTTGACAAAAGGGGTGGGGGGCTAGATCGCAAATATAGAAATCCAATTTCTTCAAAAAAAGTCCTTAATTTTCAATGATTTCTAATTCTCAAAACTTTTTTATCTCTAATCTTTCCAACTTTATCTTTCTTTCTTCCTTTTTTTATTCCTCTGACATCTTCTGCCATTTCCCTTCCCAAGGTCTTCTAGATATTTCTAGATTGCTATCTTTTTCTATTTATGTTTTTGCCATTTTTCCTTTTTTTTTGTATAAATATTCTTCTATTTTTAGTTTTTTTTCACTCAAAAATTTCCTTTTATTATTATTTTTAAAGGGAAAAATCAACATTTAAAAAAACCATCATACATAGAAGTAGCGTCTTTCAGCTTTTAACTTTGAGCTCTATTATCTTACTTCCTGTAACAGATATTAAAAAGTGCTTAACTGATAAATTGTTTATCATGATATCAGCTACATTTTATTAGTTGACACATTTTTGATATCTCTCATAGGAATGAAGATAAAGCTGGTAAAAGCAAAGCCCCCCCCCCCTTCCAAAGTAGGGGGGGGGGAGGTCTCTACTATTGTCGTTGAAGTCAATTATCTCACTTTCTGTAAAAGATATCAAAAAGTGGTCAACTGATAAAGTACTTATCTTTTTATCAGTTACATTTTATCACCTGACAACTTTTTGATATCTTCCACAGGAATTGAGATATGGGAGCTCTTCTATTACAGGTTTTACGGTCACTAGAAAAATTGCCTTTTTTTGGAAAATATGCTCAAAAAAAGCAAAAAAATTGTTTTTTGATTCCTCAAAAAAAAAGAGAGGGGAAAAACTTTTTCCTCCTCATTTTTCCCCCCGAAAAAAGCAATATTTACTCAGTCGGAGAGCTCATCTGAATGGACCATGTGACCAGTTTTTTCTTTTCATTATTTTTA</canonical>
            <polymorphic>TATCTTTTTATTAGCTACATTTTATCAGTTGATCACTTTTTGATATCTCTAACAGGGACCCACATAATTTAGATCAAAGTTGACAAAAGGGGTGGGGGGCTAGATCGCAAATATAGAAATCCAATTTCTTCAAAAAAAGTCCTTAATTTTCAATGATTTCTAATTCTCAAAACTTTTTTATCTCTAATCTTTCCAACTTTATCTTTCTTTCTTCCTTTTTTTATTCCTCTGACATCTTCTGCCATTTCCCTTCCCAAGGTCTTCTAGATATTTCTAGATTGCTATCTTTTTCTATTTATGTTTTTGCCATTTTTCCTTTTTTTTTGTATAAATATTCTTCTATTTTTAGTTTTTTTTCACTCAAAAATTTCCTTTTATTATTATTTTTAAAGGGAAAAATCAACATTTAAAAAAACCATCATACATAGAAGTAGCGTCTTTCAGCTTTTAACTTTGAGCTCTATTATCTTACTTCCTGTAACAGATATTAAAAAGTGCTYAACTGATAAATTGTTTATCATGATATCAGCTACATTTTATTAGTTGACACATTTTTGATATCTCTCATAGGAATGAAGATAAAGCTGGTAAAAGCAAAGCCCCCCCCCCCTTCCAAAGTAGGGGGGGGGGAGGTCTCTACTATTGTCGTTGAAGTCAATTATCTCACTTTCTGTAAAAGATATCAAAAAGTGGTCAACTGATAAAGTACTTATCTTTTTATCAGTTACATTTTATCACCTGACAACTTTTTGATATCTTCCACAGGAATTGAGATATGGGAGCTCTTCTATTACAGGTTTTACGGTCACTAGAAAAATTGCCTTTTTTTGGAAAATATGCTCAAAAAAAGCAAAAAAATTGTTTTTTGATTCCTCAAAAAAAAAGAGAGGGGAAAAACTTTTTCCTCCTCATTTTTCCCCCCGAAAAAAGCAATATTTACTCAGTCGGAGAGCTCATCTGAATGGACCATGTGACCAGTTTTTTCTTTTCATTATTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>501 244 143 41 40 20 11</canonical_bands>
                <polymorphic_bands>512 244 143 41 40 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCCCAAGGTCTTCTAGATATT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTTTCCCCTCTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>651</pcr_amplicon_size>
		<canonical_amplicon>CTTCCCAAGGTCTTCTAGATATTTCTAGATTGCTATCTTTTTCTATTTATGTTTTTGCCATTTTTCCTTTTTTTTTGTATAAATATTCTTCTATTTTTAGTTTTTTTTCACTCAAAAATTTCCTTTTATTATTATTTTTAAAGGGAAAAATCAACATTTAAAAAAACCATCATACATAGAAGTAGCGTCTTTCAGCTTTTAACTTTGAGCTCTATTATCTTACTTCCTGTAACAGATATTAAAAAGTGCTTAACTGATAAATTGTTTATCATGATATCAGCTACATTTTATTAGTTGACACATTTTTGATATCTCTCATAGGAATGAAGATAAAGCTGGTAAAAGCAAAGCCCCCCCCCCCTTCCAAAGTAGGGGGGGGGGAGGTCTCTACTATTGTCGTTGAAGTCAATTATCTCACTTTCTGTAAAAGATATCAAAAAGTGGTCAACTGATAAAGTACTTATCTTTTTATCAGTTACATTTTATCACCTGACAACTTTTTGATATCTTCCACAGGAATTGAGATATGGGAGCTCTTCTATTACAGGTTTTACGGTCACTAGAAAAATTGCCTTTTTTTGGAAAATATGCTCAAAAAAAGCAAAAAAATTGTTTTTTGATTCCTCAAAAAAAAAGAGAGGGGAAAAACTT</canonical_amplicon>
		<polymorphic_amplicon>CTTCCCAAGGTCTTCTAGATATTTCTAGATTGCTATCTTTTTCTATTTATGTTTTTGCCATTTTTCCTTTTTTTTTGTATAAATATTCTTCTATTTTTAGTTTTTTTTCACTCAAAAATTTCCTTTTATTATTATTTTTAAAGGGAAAAATCAACATTTAAAAAAACCATCATACATAGAAGTAGCGTCTTTCAGCTTTTAACTTTGAGCTCTATTATCTTACTTCCTGTAACAGATATTAAAAAGTGCTYAACTGATAAATTGTTTATCATGATATCAGCTACATTTTATTAGTTGACACATTTTTGATATCTCTCATAGGAATGAAGATAAAGCTGGTAAAAGCAAAGCCCCCCCCCCCTTCCAAAGTAGGGGGGGGGGAGGTCTCTACTATTGTCGTTGAAGTCAATTATCTCACTTTCTGTAAAAGATATCAAAAAGTGGTCAACTGATAAAGTACTTATCTTTTTATCAGTTACATTTTATCACCTGACAACTTTTTGATATCTTCCACAGGAATTGAGATATGGGAGCTCTTCTATTACAGGTTTTACGGTCACTAGAAAAATTGCCTTTTTTTGGAAAATATGCTCAAAAAAAGCAAAAAAATTGTTTTTTGATTCCTCAAAAAAAAAGAGAGGGGAAAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26952</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>1531</contig_pos>
        <strand></strand>
        <context>taaattgttt[A/G]tcatgatatc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTACTTCCTGTAACAGATATTAAAAAGTGCTTAACTGATAAATTGTTT</left_flank>
        <right_flank>TCATGATATCAGCTACATTTTATTAGTTGACACATTTTTGATATCTCTCA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTTATCAGTTGATCACTTTTTGATATCTCTAACAGGGACCCACATAATTTAGATCAAAGTTGACAAAAGGGGTGGGGGGCTAGATCGCAAATATAGAAATCCAATTTCTTCAAAAAAAGTCCTTAATTTTCAATGATTTCTAATTCTCAAAACTTTTTTATCTCTAATCTTTCCAACTTTATCTTTCTTTCTTCCTTTTTTTATTCCTCTGACATCTTCTGCCATTTCCCTTCCCAAGGTCTTCTAGATATTTCTAGATTGCTATCTTTTTCTATTTATGTTTTTGCCATTTTTCCTTTTTTTTTGTATAAATATTCTTCTATTTTTAGTTTTTTTTCACTCAAAAATTTCCTTTTATTATTATTTTTAAAGGGAAAAATCAACATTTAAAAAAACCATCATACATAGAAGTAGCGTCTTTCAGCTTTTAACTTTGAGCTCTATTATCTTACTTCCTGTAACAGATATTAAAAAGTGCTTAACTGATAAATTGTTTATCATGATATCAGCTACATTTTATTAGTTGACACATTTTTGATATCTCTCATAGGAATGAAGATAAAGCTGGTAAAAGCAAAGCCCCCCCCCCCTTCCAAAGTAGGGGGGGGGGAGGTCTCTACTATTGTCGTTGAAGTCAATTATCTCACTTTCTGTAAAAGATATCAAAAAGTGGTCAACTGATAAAGTACTTATCTTTTTATCAGTTACATTTTATCACCTGACAACTTTTTGATATCTTCCACAGGAATTGAGATATGGGAGCTCTTCTATTACAGGTTTTACGGTCACTAGAAAAATTGCCTTTTTTTGGAAAATATGCTCAAAAAAAGCAAAAAAATTGTTTTTTGATTCCTCAAAAAAAAAGAGAGGGGAAAAACTTTTTCCTCCTCATTTTTCCCCCCGAAAAAAGCAATATTTACTCAGTCGGAGAGCTCATCTGAATGGACCATGTGACCAGTTTTTTCTTTTCATTATTTTTACCTTTTTCGTCTGGAGG</canonical>
            <polymorphic>CATTTTATCAGTTGATCACTTTTTGATATCTCTAACAGGGACCCACATAATTTAGATCAAAGTTGACAAAAGGGGTGGGGGGCTAGATCGCAAATATAGAAATCCAATTTCTTCAAAAAAAGTCCTTAATTTTCAATGATTTCTAATTCTCAAAACTTTTTTATCTCTAATCTTTCCAACTTTATCTTTCTTTCTTCCTTTTTTTATTCCTCTGACATCTTCTGCCATTTCCCTTCCCAAGGTCTTCTAGATATTTCTAGATTGCTATCTTTTTCTATTTATGTTTTTGCCATTTTTCCTTTTTTTTTGTATAAATATTCTTCTATTTTTAGTTTTTTTTCACTCAAAAATTTCCTTTTATTATTATTTTTAAAGGGAAAAATCAACATTTAAAAAAACCATCATACATAGAAGTAGCGTCTTTCAGCTTTTAACTTTGAGCTCTATTATCTTACTTCCTGTAACAGATATTAAAAAGTGCTTAACTGATAAATTGTTTRTCATGATATCAGCTACATTTTATTAGTTGACACATTTTTGATATCTCTCATAGGAATGAAGATAAAGCTGGTAAAAGCAAAGCCCCCCCCCCCTTCCAAAGTAGGGGGGGGGGAGGTCTCTACTATTGTCGTTGAAGTCAATTATCTCACTTTCTGTAAAAGATATCAAAAAGTGGTCAACTGATAAAGTACTTATCTTTTTATCAGTTACATTTTATCACCTGACAACTTTTTGATATCTTCCACAGGAATTGAGATATGGGAGCTCTTCTATTACAGGTTTTACGGTCACTAGAAAAATTGCCTTTTTTTGGAAAATATGCTCAAAAAAAGCAAAAAAATTGTTTTTTGATTCCTCAAAAAAAAAGAGAGGGGAAAAACTTTTTCCTCCTCATTTTTCCCCCCGAAAAAAGCAATATTTACTCAGTCGGAGAGCTCATCTGAATGGACCATGTGACCAGTTTTTTCTTTTCATTATTTTTACCTTTTTCGTCTGGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCCCAAGGTCTTCTAGATATT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTTTCCCCTCTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>651</pcr_amplicon_size>
		<canonical_amplicon>CTTCCCAAGGTCTTCTAGATATTTCTAGATTGCTATCTTTTTCTATTTATGTTTTTGCCATTTTTCCTTTTTTTTTGTATAAATATTCTTCTATTTTTAGTTTTTTTTCACTCAAAAATTTCCTTTTATTATTATTTTTAAAGGGAAAAATCAACATTTAAAAAAACCATCATACATAGAAGTAGCGTCTTTCAGCTTTTAACTTTGAGCTCTATTATCTTACTTCCTGTAACAGATATTAAAAAGTGCTTAACTGATAAATTGTTTATCATGATATCAGCTACATTTTATTAGTTGACACATTTTTGATATCTCTCATAGGAATGAAGATAAAGCTGGTAAAAGCAAAGCCCCCCCCCCCTTCCAAAGTAGGGGGGGGGGAGGTCTCTACTATTGTCGTTGAAGTCAATTATCTCACTTTCTGTAAAAGATATCAAAAAGTGGTCAACTGATAAAGTACTTATCTTTTTATCAGTTACATTTTATCACCTGACAACTTTTTGATATCTTCCACAGGAATTGAGATATGGGAGCTCTTCTATTACAGGTTTTACGGTCACTAGAAAAATTGCCTTTTTTTGGAAAATATGCTCAAAAAAAGCAAAAAAATTGTTTTTTGATTCCTCAAAAAAAAAGAGAGGGGAAAAACTT</canonical_amplicon>
		<polymorphic_amplicon>CTTCCCAAGGTCTTCTAGATATTTCTAGATTGCTATCTTTTTCTATTTATGTTTTTGCCATTTTTCCTTTTTTTTTGTATAAATATTCTTCTATTTTTAGTTTTTTTTCACTCAAAAATTTCCTTTTATTATTATTTTTAAAGGGAAAAATCAACATTTAAAAAAACCATCATACATAGAAGTAGCGTCTTTCAGCTTTTAACTTTGAGCTCTATTATCTTACTTCCTGTAACAGATATTAAAAAGTGCTTAACTGATAAATTGTTTRTCATGATATCAGCTACATTTTATTAGTTGACACATTTTTGATATCTCTCATAGGAATGAAGATAAAGCTGGTAAAAGCAAAGCCCCCCCCCCCTTCCAAAGTAGGGGGGGGGGAGGTCTCTACTATTGTCGTTGAAGTCAATTATCTCACTTTCTGTAAAAGATATCAAAAAGTGGTCAACTGATAAAGTACTTATCTTTTTATCAGTTACATTTTATCACCTGACAACTTTTTGATATCTTCCACAGGAATTGAGATATGGGAGCTCTTCTATTACAGGTTTTACGGTCACTAGAAAAATTGCCTTTTTTTGGAAAATATGCTCAAAAAAAGCAAAAAAATTGTTTTTTGATTCCTCAAAAAAAAAGAGAGGGGAAAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26953</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>1684</contig_pos>
        <strand></strand>
        <context>tatctcactt[T/C]ctgtaaaaga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGGGGGGGGGGAGGTCTCTACTATTGTCGTTGAAGTCAATTATCTCACTT</left_flank>
        <right_flank>CTGTAAAAGATATCAAAAAGTGGTCAACTGATAAAGTACTTATCTTTTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTTTTTTATCTCTAATCTTTCCAACTTTATCTTTCTTTCTTCCTTTTTTTATTCCTCTGACATCTTCTGCCATTTCCCTTCCCAAGGTCTTCTAGATATTTCTAGATTGCTATCTTTTTCTATTTATGTTTTTGCCATTTTTCCTTTTTTTTTGTATAAATATTCTTCTATTTTTAGTTTTTTTTCACTCAAAAATTTCCTTTTATTATTATTTTTAAAGGGAAAAATCAACATTTAAAAAAACCATCATACATAGAAGTAGCGTCTTTCAGCTTTTAACTTTGAGCTCTATTATCTTACTTCCTGTAACAGATATTAAAAAGTGCTTAACTGATAAATTGTTTATCATGATATCAGCTACATTTTATTAGTTGACACATTTTTGATATCTCTCATAGGAATGAAGATAAAGCTGGTAAAAGCAAAGCCCCCCCCCCCTTCCAAAGTAGGGGGGGGGGAGGTCTCTACTATTGTCGTTGAAGTCAATTATCTCACTTTCTGTAAAAGATATCAAAAAGTGGTCAACTGATAAAGTACTTATCTTTTTATCAGTTACATTTTATCACCTGACAACTTTTTGATATCTTCCACAGGAATTGAGATATGGGAGCTCTTCTATTACAGGTTTTACGGTCACTAGAAAAATTGCCTTTTTTTGGAAAATATGCTCAAAAAAAGCAAAAAAATTGTTTTTTGATTCCTCAAAAAAAAAGAGAGGGGAAAAACTTTTTCCTCCTCATTTTTCCCCCCGAAAAAAGCAATATTTACTCAGTCGGAGAGCTCATCTGAATGGACCATGTGACCAGTTTTTTCTTTTCATTATTTTTACCTTTTTCGTCTGGAGGCCTTCATATGAGTTCAAAAATCTTATAAAAATTTATTATTTTTAAGGTTTTGAAATCCTTTAAAAATGTTTGAATTTTACTTTTTTTCATTATAAATCTCATACCGTAGACACTCTAATAGAACGTCACCCGAATCATCGTCAAATTTGAGCC</canonical>
            <polymorphic>AACTTTTTTATCTCTAATCTTTCCAACTTTATCTTTCTTTCTTCCTTTTTTTATTCCTCTGACATCTTCTGCCATTTCCCTTCCCAAGGTCTTCTAGATATTTCTAGATTGCTATCTTTTTCTATTTATGTTTTTGCCATTTTTCCTTTTTTTTTGTATAAATATTCTTCTATTTTTAGTTTTTTTTCACTCAAAAATTTCCTTTTATTATTATTTTTAAAGGGAAAAATCAACATTTAAAAAAACCATCATACATAGAAGTAGCGTCTTTCAGCTTTTAACTTTGAGCTCTATTATCTTACTTCCTGTAACAGATATTAAAAAGTGCTTAACTGATAAATTGTTTATCATGATATCAGCTACATTTTATTAGTTGACACATTTTTGATATCTCTCATAGGAATGAAGATAAAGCTGGTAAAAGCAAAGCCCCCCCCCCCTTCCAAAGTAGGGGGGGGGGAGGTCTCTACTATTGTCGTTGAAGTCAATTATCTCACTTYCTGTAAAAGATATCAAAAAGTGGTCAACTGATAAAGTACTTATCTTTTTATCAGTTACATTTTATCACCTGACAACTTTTTGATATCTTCCACAGGAATTGAGATATGGGAGCTCTTCTATTACAGGTTTTACGGTCACTAGAAAAATTGCCTTTTTTTGGAAAATATGCTCAAAAAAAGCAAAAAAATTGTTTTTTGATTCCTCAAAAAAAAAGAGAGGGGAAAAACTTTTTCCTCCTCATTTTTCCCCCCGAAAAAAGCAATATTTACTCAGTCGGAGAGCTCATCTGAATGGACCATGTGACCAGTTTTTTCTTTTCATTATTTTTACCTTTTTCGTCTGGAGGCCTTCATATGAGTTCAAAAATCTTATAAAAATTTATTATTTTTAAGGTTTTGAAATCCTTTAAAAATGTTTGAATTTTACTTTTTTTCATTATAAATCTCATACCGTAGACACTCTAATAGAACGTCACCCGAATCATCGTCAAATTTGAGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCCCAAGGTCTTCTAGATATT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTTTCCCCTCTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>651</pcr_amplicon_size>
		<canonical_amplicon>CTTCCCAAGGTCTTCTAGATATTTCTAGATTGCTATCTTTTTCTATTTATGTTTTTGCCATTTTTCCTTTTTTTTTGTATAAATATTCTTCTATTTTTAGTTTTTTTTCACTCAAAAATTTCCTTTTATTATTATTTTTAAAGGGAAAAATCAACATTTAAAAAAACCATCATACATAGAAGTAGCGTCTTTCAGCTTTTAACTTTGAGCTCTATTATCTTACTTCCTGTAACAGATATTAAAAAGTGCTTAACTGATAAATTGTTTATCATGATATCAGCTACATTTTATTAGTTGACACATTTTTGATATCTCTCATAGGAATGAAGATAAAGCTGGTAAAAGCAAAGCCCCCCCCCCCTTCCAAAGTAGGGGGGGGGGAGGTCTCTACTATTGTCGTTGAAGTCAATTATCTCACTTTCTGTAAAAGATATCAAAAAGTGGTCAACTGATAAAGTACTTATCTTTTTATCAGTTACATTTTATCACCTGACAACTTTTTGATATCTTCCACAGGAATTGAGATATGGGAGCTCTTCTATTACAGGTTTTACGGTCACTAGAAAAATTGCCTTTTTTTGGAAAATATGCTCAAAAAAAGCAAAAAAATTGTTTTTTGATTCCTCAAAAAAAAAGAGAGGGGAAAAACTT</canonical_amplicon>
		<polymorphic_amplicon>CTTCCCAAGGTCTTCTAGATATTTCTAGATTGCTATCTTTTTCTATTTATGTTTTTGCCATTTTTCCTTTTTTTTTGTATAAATATTCTTCTATTTTTAGTTTTTTTTCACTCAAAAATTTCCTTTTATTATTATTTTTAAAGGGAAAAATCAACATTTAAAAAAACCATCATACATAGAAGTAGCGTCTTTCAGCTTTTAACTTTGAGCTCTATTATCTTACTTCCTGTAACAGATATTAAAAAGTGCTTAACTGATAAATTGTTTATCATGATATCAGCTACATTTTATTAGTTGACACATTTTTGATATCTCTCATAGGAATGAAGATAAAGCTGGTAAAAGCAAAGCCCCCCCCCCCTTCCAAAGTAGGGGGGGGGGAGGTCTCTACTATTGTCGTTGAAGTCAATTATCTCACTTYCTGTAAAAGATATCAAAAAGTGGTCAACTGATAAAGTACTTATCTTTTTATCAGTTACATTTTATCACCTGACAACTTTTTGATATCTTCCACAGGAATTGAGATATGGGAGCTCTTCTATTACAGGTTTTACGGTCACTAGAAAAATTGCCTTTTTTTGGAAAATATGCTCAAAAAAAGCAAAAAAATTGTTTTTTGATTCCTCAAAAAAAAAGAGAGGGGAAAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26954</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>1753</contig_pos>
        <strand></strand>
        <context>attttatcac[C/T]tgacaacttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTGGTCAACTGATAAAGTACTTATCTTTTTATCAGTTACATTTTATCAC</left_flank>
        <right_flank>TGACAACTTTTTGATATCTTCCACAGGAATTGAGATATGGGAGCTCTTCT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCCATTTCCCTTCCCAAGGTCTTCTAGATATTTCTAGATTGCTATCTTTTTCTATTTATGTTTTTGCCATTTTTCCTTTTTTTTTGTATAAATATTCTTCTATTTTTAGTTTTTTTTCACTCAAAAATTTCCTTTTATTATTATTTTTAAAGGGAAAAATCAACATTTAAAAAAACCATCATACATAGAAGTAGCGTCTTTCAGCTTTTAACTTTGAGCTCTATTATCTTACTTCCTGTAACAGATATTAAAAAGTGCTTAACTGATAAATTGTTTATCATGATATCAGCTACATTTTATTAGTTGACACATTTTTGATATCTCTCATAGGAATGAAGATAAAGCTGGTAAAAGCAAAGCCCCCCCCCCCTTCCAAAGTAGGGGGGGGGGAGGTCTCTACTATTGTCGTTGAAGTCAATTATCTCACTTTCTGTAAAAGATATCAAAAAGTGGTCAACTGATAAAGTACTTATCTTTTTATCAGTTACATTTTATCACCTGACAACTTTTTGATATCTTCCACAGGAATTGAGATATGGGAGCTCTTCTATTACAGGTTTTACGGTCACTAGAAAAATTGCCTTTTTTTGGAAAATATGCTCAAAAAAAGCAAAAAAATTGTTTTTTGATTCCTCAAAAAAAAAGAGAGGGGAAAAACTTTTTCCTCCTCATTTTTCCCCCCGAAAAAAGCAATATTTACTCAGTCGGAGAGCTCATCTGAATGGACCATGTGACCAGTTTTTTCTTTTCATTATTTTTACCTTTTTCGTCTGGAGGCCTTCATATGAGTTCAAAAATCTTATAAAAATTTATTATTTTTAAGGTTTTGAAATCCTTTAAAAATGTTTGAATTTTACTTTTTTTCATTATAAATCTCATACCGTAGACACTCTAATAGAACGTCACCCGAATCATCGTCAAATTTGAGCCCATGTATCTCATTTTCTGTAAGAGATATCAAAAAGTGATCAATTGATAAAATGTAGCTGATATCATGAT</canonical>
            <polymorphic>TGCCATTTCCCTTCCCAAGGTCTTCTAGATATTTCTAGATTGCTATCTTTTTCTATTTATGTTTTTGCCATTTTTCCTTTTTTTTTGTATAAATATTCTTCTATTTTTAGTTTTTTTTCACTCAAAAATTTCCTTTTATTATTATTTTTAAAGGGAAAAATCAACATTTAAAAAAACCATCATACATAGAAGTAGCGTCTTTCAGCTTTTAACTTTGAGCTCTATTATCTTACTTCCTGTAACAGATATTAAAAAGTGCTTAACTGATAAATTGTTTATCATGATATCAGCTACATTTTATTAGTTGACACATTTTTGATATCTCTCATAGGAATGAAGATAAAGCTGGTAAAAGCAAAGCCCCCCCCCCCTTCCAAAGTAGGGGGGGGGGAGGTCTCTACTATTGTCGTTGAAGTCAATTATCTCACTTTCTGTAAAAGATATCAAAAAGTGGTCAACTGATAAAGTACTTATCTTTTTATCAGTTACATTTTATCACYTGACAACTTTTTGATATCTTCCACAGGAATTGAGATATGGGAGCTCTTCTATTACAGGTTTTACGGTCACTAGAAAAATTGCCTTTTTTTGGAAAATATGCTCAAAAAAAGCAAAAAAATTGTTTTTTGATTCCTCAAAAAAAAAGAGAGGGGAAAAACTTTTTCCTCCTCATTTTTCCCCCCGAAAAAAGCAATATTTACTCAGTCGGAGAGCTCATCTGAATGGACCATGTGACCAGTTTTTTCTTTTCATTATTTTTACCTTTTTCGTCTGGAGGCCTTCATATGAGTTCAAAAATCTTATAAAAATTTATTATTTTTAAGGTTTTGAAATCCTTTAAAAATGTTTGAATTTTACTTTTTTTCATTATAAATCTCATACCGTAGACACTCTAATAGAACGTCACCCGAATCATCGTCAAATTTGAGCCCATGTATCTCATTTTCTGTAAGAGATATCAAAAAGTGATCAATTGATAAAATGTAGCTGATATCATGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCCCAAGGTCTTCTAGATATT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTTTCCCCTCTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>651</pcr_amplicon_size>
		<canonical_amplicon>CTTCCCAAGGTCTTCTAGATATTTCTAGATTGCTATCTTTTTCTATTTATGTTTTTGCCATTTTTCCTTTTTTTTTGTATAAATATTCTTCTATTTTTAGTTTTTTTTCACTCAAAAATTTCCTTTTATTATTATTTTTAAAGGGAAAAATCAACATTTAAAAAAACCATCATACATAGAAGTAGCGTCTTTCAGCTTTTAACTTTGAGCTCTATTATCTTACTTCCTGTAACAGATATTAAAAAGTGCTTAACTGATAAATTGTTTATCATGATATCAGCTACATTTTATTAGTTGACACATTTTTGATATCTCTCATAGGAATGAAGATAAAGCTGGTAAAAGCAAAGCCCCCCCCCCCTTCCAAAGTAGGGGGGGGGGAGGTCTCTACTATTGTCGTTGAAGTCAATTATCTCACTTTCTGTAAAAGATATCAAAAAGTGGTCAACTGATAAAGTACTTATCTTTTTATCAGTTACATTTTATCACCTGACAACTTTTTGATATCTTCCACAGGAATTGAGATATGGGAGCTCTTCTATTACAGGTTTTACGGTCACTAGAAAAATTGCCTTTTTTTGGAAAATATGCTCAAAAAAAGCAAAAAAATTGTTTTTTGATTCCTCAAAAAAAAAGAGAGGGGAAAAACTT</canonical_amplicon>
		<polymorphic_amplicon>CTTCCCAAGGTCTTCTAGATATTTCTAGATTGCTATCTTTTTCTATTTATGTTTTTGCCATTTTTCCTTTTTTTTTGTATAAATATTCTTCTATTTTTAGTTTTTTTTCACTCAAAAATTTCCTTTTATTATTATTTTTAAAGGGAAAAATCAACATTTAAAAAAACCATCATACATAGAAGTAGCGTCTTTCAGCTTTTAACTTTGAGCTCTATTATCTTACTTCCTGTAACAGATATTAAAAAGTGCTTAACTGATAAATTGTTTATCATGATATCAGCTACATTTTATTAGTTGACACATTTTTGATATCTCTCATAGGAATGAAGATAAAGCTGGTAAAAGCAAAGCCCCCCCCCCCTTCCAAAGTAGGGGGGGGGGAGGTCTCTACTATTGTCGTTGAAGTCAATTATCTCACTTTCTGTAAAAGATATCAAAAAGTGGTCAACTGATAAAGTACTTATCTTTTTATCAGTTACATTTTATCACYTGACAACTTTTTGATATCTTCCACAGGAATTGAGATATGGGAGCTCTTCTATTACAGGTTTTACGGTCACTAGAAAAATTGCCTTTTTTTGGAAAATATGCTCAAAAAAAGCAAAAAAATTGTTTTTTGATTCCTCAAAAAAAAAGAGAGGGGAAAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26955</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>2036</contig_pos>
        <strand></strand>
        <context>TGGAGGCCTT[C/T]ATATGAGTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGACCAGTTTTTTCTTTTCATTATTTTTACCTTTTTCGTCTGGAGGCCTT</left_flank>
        <right_flank>ATATGAGTTCAAAAATCTTATAAAAATTTATTATTTTTAAGGTTTTGAAA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATCAGCTACATTTTATTAGTTGACACATTTTTGATATCTCTCATAGGAATGAAGATAAAGCTGGTAAAAGCAAAGCCCCCCCCCCCTTCCAAAGTAGGGGGGGGGGAGGTCTCTACTATTGTCGTTGAAGTCAATTATCTCACTTTCTGTAAAAGATATCAAAAAGTGGTCAACTGATAAAGTACTTATCTTTTTATCAGTTACATTTTATCACCTGACAACTTTTTGATATCTTCCACAGGAATTGAGATATGGGAGCTCTTCTATTACAGGTTTTACGGTCACTAGAAAAATTGCCTTTTTTTGGAAAATATGCTCAAAAAAAGCAAAAAAATTGTTTTTTGATTCCTCAAAAAAAAAGAGAGGGGAAAAACTTTTTCCTCCTCATTTTTCCCCCCGAAAAAAGCAATATTTACTCAGTCGGAGAGCTCATCTGAATGGACCATGTGACCAGTTTTTTCTTTTCATTATTTTTACCTTTTTCGTCTGGAGGCCTTCATATGAGTTCAAAAATCTTATAAAAATTTATTATTTTTAAGGTTTTGAAATCCTTTAAAAATGTTTGAATTTTACTTTTTTTCATTATAAATCTCATACCGTAGACACTCTAATAGAACGTCACCCGAATCATCGTCAAATTTGAGCCCATGTATCTCATTTTCTGTAAGAGATATCAAAAAGTGATCAATTGATAAAATGTAGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATATCTCTCAAAAGAAGTGAGATATATATGCTGAAAGTTTACGGTCCTGGTGGCGTTCTATTAGAGTGTTTACTGTAATACGATTTTTCACAATTTTCTTGTATTTTAAATTCTAAAAAAATTAAAACTCGATTTCTAGAATTTTTGAAATTATGATCTATTTTTAATATATATATATTTTTTTCCTTGAAAAAAAGGAACTAAATTATTTTTTTTGGTAAACAAATCTCTCTACTAATCTGTTATTTATGCTCG</canonical>
            <polymorphic>ATATCAGCTACATTTTATTAGTTGACACATTTTTGATATCTCTCATAGGAATGAAGATAAAGCTGGTAAAAGCAAAGCCCCCCCCCCCTTCCAAAGTAGGGGGGGGGGAGGTCTCTACTATTGTCGTTGAAGTCAATTATCTCACTTTCTGTAAAAGATATCAAAAAGTGGTCAACTGATAAAGTACTTATCTTTTTATCAGTTACATTTTATCACCTGACAACTTTTTGATATCTTCCACAGGAATTGAGATATGGGAGCTCTTCTATTACAGGTTTTACGGTCACTAGAAAAATTGCCTTTTTTTGGAAAATATGCTCAAAAAAAGCAAAAAAATTGTTTTTTGATTCCTCAAAAAAAAAGAGAGGGGAAAAACTTTTTCCTCCTCATTTTTCCCCCCGAAAAAAGCAATATTTACTCAGTCGGAGAGCTCATCTGAATGGACCATGTGACCAGTTTTTTCTTTTCATTATTTTTACCTTTTTCGTCTGGAGGCCTTYATATGAGTTCAAAAATCTTATAAAAATTTATTATTTTTAAGGTTTTGAAATCCTTTAAAAATGTTTGAATTTTACTTTTTTTCATTATAAATCTCATACCGTAGACACTCTAATAGAACGTCACCCGAATCATCGTCAAATTTGAGCCCATGTATCTCATTTTCTGTAAGAGATATCAAAAAGTGATCAATTGATAAAATGTAGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATATCTCTCAAAAGAAGTGAGATATATATGCTGAAAGTTTACGGTCCTGGTGGCGTTCTATTAGAGTGTTTACTGTAATACGATTTTTCACAATTTTCTTGTATTTTAAATTCTAAAAAAATTAAAACTCGATTTCTAGAATTTTTGAAATTATGATCTATTTTTAATATATATATATTTTTTTCCTTGAAAAAAAGGAACTAAATTATTTTTTTTGGTAAACAAATCTCTCTACTAATCTGTTATTTATGCTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATATG</site>
                <isoschizomers>
                    <enzyme>FauNDI</enzyme>
                    <enzyme>NdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTGAATGGACCATGTGAC</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAAATTGTGAAAAATCGTA</pcr_primer_p2>
		<pcr_amplicon_size>413</pcr_amplicon_size>
		<canonical_amplicon>ATCTGAATGGACCATGTGACCAGTTTTTTCTTTTCATTATTTTTACCTTTTTCGTCTGGAGGCCTTCATATGAGTTCAAAAATCTTATAAAAATTTATTATTTTTAAGGTTTTGAAATCCTTTAAAAATGTTTGAATTTTACTTTTTTTCATTATAAATCTCATACCGTAGACACTCTAATAGAACGTCACCCGAATCATCGTCAAATTTGAGCCCATGTATCTCATTTTCTGTAAGAGATATCAAAAAGTGATCAATTGATAAAATGTAGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATATCTCTCAAAAGAAGTGAGATATATATGCTGAAAGTTTACGGTCCTGGTGGCGTTCTATTAGAGTGTTTACTGTAATACGATTTTTCACAATTTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>ATCTGAATGGACCATGTGACCAGTTTTTTCTTTTCATTATTTTTACCTTTTTCGTCTGGAGGCCTTYATATGAGTTCAAAAATCTTATAAAAATTTATTATTTTTAAGGTTTTGAAATCCTTTAAAAATGTTTGAATTTTACTTTTTTTCATTATAAATCTCATACCGTAGACACTCTAATAGAACGTCACCCGAATCATCGTCAAATTTGAGCCCATGTATCTCATTTTCTGTAAGAGATATCAAAAAGTGATCAATTGATAAAATGTAGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATATCTCTCAAAAGAAGTGAGATATATATGCTGAAAGTTTACGGTCCTGGTGGCGTTCTATTAGAGTGTTTACTGTAATACGATTTTTCACAATTTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26956</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>55658</contig_pos>
        <strand></strand>
        <context>tttgtcaact[A/G]ataaatgata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAACCCAGTGTATCATGGTTACTGTAAGAGGTATCAAAAATTTGTCAACT</left_flank>
        <right_flank>ATAAATGATAGCTCTTATTATGATAAATGTTTTATCAGTTAACAAATTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGTCTAGAACCTCAAAACTTCCTTTAAAAAATTTCAGACTCTCTCCGGACGCTGAAATTTCCATTCACCGAGCGATATCTGAGATTATGGAACCAATGGATTCGTTGGATGTTAGCATGGAGGAATTGGTGCTTTTAAAGTTCATCATGTTGTTCACAGGTACAGTAATCTTACTAAAATTTTGGAAAAAAAAGTGTTTTTGAAGTAAAAAGTTACTGTATTTCCTGTAATTGGCCTGTCCCAGCAAAGCAGTTGTCTTTGAACCTATTTATTTCGGTTACTGTAAGAGATATCAAAATGCGGTTAATTGATAAAATGTTTATCATTATATCAGCTACATTTTATCAGTCGAACAATTTTTCATATCTATAACATGAATCGAGATAAACTAGGTCAAATGTGGGAGGAGTCACGCCTCTGTAAGCTAAGCTCGATTAGCGCCGACTTTAACCCAGTGTATCATGGTTACTGTAAGAGGTATCAAAAATTTGTCAACTAATAAATGATAGCTCTTATTATGATAAATGTTTTATCAGTTAACAAATTTTTGATATCTTTTACAGGAACTGAGATAATTGAAATTGAAGTTGACTAGAAGAATTACAGTAAATTTGAAGCTAGCATGAGTTGGGTGAAAATCAACCGATTTATACGAATTTTGGCTTACAATCGCTTGAAAATATTACTGTACTTTATTCCAGAACCTTCGTCATCAAAATCCTCCACGGATAGCTACCGTATCCGATGCTACCGTCTCAAATACTGCGAATTGCTCAGGAAATACATAATGGCTCAAATTCCGGACCCCGAGAAGCGGATAGCGAGAATTGCCGAGTTGCTGAAGATTGTAGAATCTGTTAGAGTGAGTTTAGCTACAGTAATCCTGAAAAAAATGTTTTGAAAACTTTTTTTAAATTTTTCGAAAAGCTCCAACTCTGCTCAAAAAGAAACAATCTTCAAAAAAAAATTTTTGTAAAAAATTTCAAATTTTCTACAGT</canonical>
            <polymorphic>TTAGTCTAGAACCTCAAAACTTCCTTTAAAAAATTTCAGACTCTCTCCGGACGCTGAAATTTCCATTCACCGAGCGATATCTGAGATTATGGAACCAATGGATTCGTTGGATGTTAGCATGGAGGAATTGGTGCTTTTAAAGTTCATCATGTTGTTCACAGGTACAGTAATCTTACTAAAATTTTGGAAAAAAAAGTGTTTTTGAAGTAAAAAGTTACTGTATTTCCTGTAATTGGCCTGTCCCAGCAAAGCAGTTGTCTTTGAACCTATTTATTTCGGTTACTGTAAGAGATATCAAAATGCGGTTAATTGATAAAATGTTTATCATTATATCAGCTACATTTTATCAGTCGAACAATTTTTCATATCTATAACATGAATCGAGATAAACTAGGTCAAATGTGGGAGGAGTCACGCCTCTGTAAGCTAAGCTCGATTAGCGCCGACTTTAACCCAGTGTATCATGGTTACTGTAAGAGGTATCAAAAATTTGTCAACTRATAAATGATAGCTCTTATTATGATAAATGTTTTATCAGTTAACAAATTTTTGATATCTTTTACAGGAACTGAGATAATTGAAATTGAAGTTGACTAGAAGAATTACAGTAAATTTGAAGCTAGCATGAGTTGGGTGAAAATCAACCGATTTATACGAATTTTGGCTTACAATCGCTTGAAAATATTACTGTACTTTATTCCAGAACCTTCGTCATCAAAATCCTCCACGGATAGCTACCGTATCCGATGCTACCGTCTCAAATACTGCGAATTGCTCAGGAAATACATAATGGCTCAAATTCCGGACCCCGAGAAGCGGATAGCGAGAATTGCCGAGTTGCTGAAGATTGTAGAATCTGTTAGAGTGAGTTTAGCTACAGTAATCCTGAAAAAAATGTTTTGAAAACTTTTTTTAAATTTTTCGAAAAGCTCCAACTCTGCTCAAAAAGAAACAATCTTCAAAAAAAAATTTTTGTAAAAAATTTCAAATTTTCTACAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCACGCCTCTGTAAGCTAAG</pcr_primer_p1>
		<pcr_primer_p2>GATTGTAAGCCAAAATTCGTA</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>TCACGCCTCTGTAAGCTAAGCTCGATTAGCGCCGACTTTAACCCAGTGTATCATGGTTACTGTAAGAGGTATCAAAAATTTGTCAACTAATAAATGATAGCTCTTATTATGATAAATGTTTTATCAGTTAACAAATTTTTGATATCTTTTACAGGAACTGAGATAATTGAAATTGAAGTTGACTAGAAGAATTACAGTAAATTTGAAGCTAGCATGAGTTGGGTGAAAATCAACCGATTTATACGAATTTTGGCTTACAATC</canonical_amplicon>
		<polymorphic_amplicon>TCACGCCTCTGTAAGCTAAGCTCGATTAGCGCCGACTTTAACCCAGTGTATCATGGTTACTGTAAGAGGTATCAAAAATTTGTCAACTRATAAATGATAGCTCTTATTATGATAAATGTTTTATCAGTTAACAAATTTTTGATATCTTTTACAGGAACTGAGATAATTGAAATTGAAGTTGACTAGAAGAATTACAGTAAATTTGAAGCTAGCATGAGTTGGGTGAAAATCAACCGATTTATACGAATTTTGGCTTACAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26957</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>59682</contig_pos>
        <strand>+</strand>
        <context>TTCTATACAT[A/T]ACGGAAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTGATGCTTCAAAGGTTGGTGATTCTAAAACTGTTGAAATTCTATACAT</left_flank>
        <right_flank>ACGGAAATTTGGAATTCTCATTATTAGTTTAGTCTCCTGGCAAATTTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGGGGAGAAACCTTTTTTGCTTTTTTGATGAGCACTAATAAGTGATGGAACATGGTTTTTAGGTGTTTTTTAAATGATTTTTGGACATGGTAGGATGAATTTTCAGGCCAAATCCGACCATTTTCAGCTAACCACCAACGTCAACAAGCAAACCGCGAAGCCGGCCGCCAAAACCGTCATCACCAAATGGATTCCAGCCAACTGGAAGGCAGCAGGGGCTACTGTAGATGCCAAGAATCCTCTCACAAAACAGGCCTACGCTCAGAAGAAGGCGTTGACCTTCATAGATTTCAGATTTTCGCTTAAAAAGTACATCAACTATTTGTTTGTTCAAGCAGTTAGTACGAAATACTTGACTCAAGCGGAGGCGGATAACATGAAGAAAATGTATTGGGCTGCTGATACTAAAGCGGTCAATAATTTCACAATGACCACTCAGATCTTCATGGCTGATGCTTCAAAGGTTGGTGATTCTAAAACTGTTGAAATTCTATACATTACGGAAATTTGGAATTCTCATTATTAGTTTAGTCTCCTGGCAAATTTTCAAAGCGTTACGACCACTGGGAGCCGAGATACAGCCATTTGAATTTTCGGCGGCGCGGTCGCGTCGCGGCTCTTCCAAAACTTCAAAGGGCCGTATATCGGCTCCTAGTGGGTCAAACTGGCTGAAATTTTGTAAGAACAGTTATTTCAGCATGGCAAACATTTTGATGTAACAATTATCCTAAGATTCAAAAATCAGATTTTTCATAAAGTTTTCAAAAATTAAGATTTTGACAAAATGTAAACTTCATTGTGTTTCTTATATTTTGTTCAGTCACCTGAAAAAATTTCAAAACGGTTGAACCACTAGGAGCCGAGATACAGCCATCCAAAGCTTTGGGGGTGCGGCGCGGTCGCGTCGCGGTCCTTCAAAATTTCAAAGGGCTGTATCTCGGCTCCCAGTAAACCGAATCTGCTGAAATTTTGTGAGAACAGATATTTTAGCATGAGAAA</canonical>
            <polymorphic>CCGGGGAGAAACCTTTTTTGCTTTTTTGATGAGCACTAATAAGTGATGGAACATGGTTTTTAGGTGTTTTTTAAATGATTTTTGGACATGGTAGGATGAATTTTCAGGCCAAATCCGACCATTTTCAGCTAACCACCAACGTCAACAAGCAAACCGCGAAGCCGGCCGCCAAAACCGTCATCACCAAATGGATTCCAGCCAACTGGAAGGCAGCAGGGGCTACTGTAGATGCCAAGAATCCTCTCACAAAACAGGCCTACGCTCAGAAGAAGGCGTTGACCTTCATAGATTTCAGATTTTCGCTTAAAAAGTACATCAACTATTTGTTTGTTCAAGCAGTTAGTACGAAATACTTGACTCAAGCGGAGGCGGATAACATGAAGAAAATGTATTGGGCTGCTGATACTAAAGCGGTCAATAATTTCACAATGACCACTCAGATCTTCATGGCTGATGCTTCAAAGGTTGGTGATTCTAAAACTGTTGAAATTCTATACATWACGGAAATTTGGAATTCTCATTATTAGTTTAGTCTCCTGGCAAATTTTCAAAGCGTTACGACCACTGGGAGCCGAGATACAGCCATTTGAATTTTCGGCGGCGCGGTCGCGTCGCGGCTCTTCCAAAACTTCAAAGGGCCGTATATCGGCTCCTAGTGGGTCAAACTGGCTGAAATTTTGTAAGAACAGTTATTTCAGCATGGCAAACATTTTGATGTAACAATTATCCTAAGATTCAAAAATCAGATTTTTCATAAAGTTTTCAAAAATTAAGATTTTGACAAAATGTAAACTTCATTGTGTTTCTTATATTTTGTTCAGTCACCTGAAAAAATTTCAAAACGGTTGAACCACTAGGAGCCGAGATACAGCCATCCAAAGCTTTGGGGGTGCGGCGCGGTCGCGTCGCGGTCCTTCAAAATTTCAAAGGGCTGTATCTCGGCTCCCAGTAAACCGAATCTGCTGAAATTTTGTGAGAACAGATATTTTAGCATGAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAGATCTTCATGGCTGAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGCCATGCTGAAATAACT</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>CTCAGATCTTCATGGCTGATGCTTCAAAGGTTGGTGATTCTAAAACTGTTGAAATTCTATACATTACGGAAATTTGGAATTCTCATTATTAGTTTAGTCTCCTGGCAAATTTTCAAAGCGTTACGACCACTGGGAGCCGAGATACAGCCATTTGAATTTTCGGCGGCGCGGTCGCGTCGCGGCTCTTCCAAAACTTCAAAGGGCCGTATATCGGCTCCTAGTGGGTCAAACTGGCTGAAATTTTGTAAGAACAGTTATTTCAGCATGGCAAA</canonical_amplicon>
		<polymorphic_amplicon>CTCAGATCTTCATGGCTGATGCTTCAAAGGTTGGTGATTCTAAAACTGTTGAAATTCTATACATWACGGAAATTTGGAATTCTCATTATTAGTTTAGTCTCCTGGCAAATTTTCAAAGCGTTACGACCACTGGGAGCCGAGATACAGCCATTTGAATTTTCGGCGGCGCGGTCGCGTCGCGGCTCTTCCAAAACTTCAAAGGGCCGTATATCGGCTCCTAGTGGGTCAAACTGGCTGAAATTTTGTAAGAACAGTTATTTCAGCATGGCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26958</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>59845</contig_pos>
        <strand>+</strand>
        <context>ctagTGGGTC[A/G]AACTGGCWGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCGGCTCTTCCAAAACTTCAAAGGGCCGTATATCGGCTCCTAGTGGGTC</left_flank>
        <right_flank>AACTGGCTGAAATTTTGTAAGAACAGTTATTTCAGCATGGCAAACATTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCCGCCAAAACCGTCATCACCAAATGGATTCCAGCCAACTGGAAGGCAGCAGGGGCTACTGTAGATGCCAAGAATCCTCTCACAAAACAGGCCTACGCTCAGAAGAAGGCGTTGACCTTCATAGATTTCAGATTTTCGCTTAAAAAGTACATCAACTATTTGTTTGTTCAAGCAGTTAGTACGAAATACTTGACTCAAGCGGAGGCGGATAACATGAAGAAAATGTATTGGGCTGCTGATACTAAAGCGGTCAATAATTTCACAATGACCACTCAGATCTTCATGGCTGATGCTTCAAAGGTTGGTGATTCTAAAACTGTTGAAATTCTATACATTACGGAAATTTGGAATTCTCATTATTAGTTTAGTCTCCTGGCAAATTTTCAAAGCGTTACGACCACTGGGAGCCGAGATACAGCCATTTGAATTTTCGGCGGCGCGGTCGCGTCGCGGCTCTTCCAAAACTTCAAAGGGCCGTATATCGGCTCCTAGTGGGTCAAACTGGCTGAAATTTTGTAAGAACAGTTATTTCAGCATGGCAAACATTTTGATGTAACAATTATCCTAAGATTCAAAAATCAGATTTTTCATAAAGTTTTCAAAAATTAAGATTTTGACAAAATGTAAACTTCATTGTGTTTCTTATATTTTGTTCAGTCACCTGAAAAAATTTCAAAACGGTTGAACCACTAGGAGCCGAGATACAGCCATCCAAAGCTTTGGGGGTGCGGCGCGGTCGCGTCGCGGTCCTTCAAAATTTCAAAGGGCTGTATCTCGGCTCCCAGTAAACCGAATCTGCTGAAATTTTGTGAGAACAGATATTTTAGCATGAGAAACATTTTTATTAAAAAACATCATGAAATTCAAAAAATTCGATTTTTTATAGATTTTCTAAAATTCGGGTTTTGATTAGATTCTATTTCCACCGTATTCGTCATGTTGAGTTTGGTTCCCTGACAAGTTTTCAGTAGAATCGAACCACTAGAAGCCGAGAAACAG</canonical>
            <polymorphic>GGCCGCCAAAACCGTCATCACCAAATGGATTCCAGCCAACTGGAAGGCAGCAGGGGCTACTGTAGATGCCAAGAATCCTCTCACAAAACAGGCCTACGCTCAGAAGAAGGCGTTGACCTTCATAGATTTCAGATTTTCGCTTAAAAAGTACATCAACTATTTGTTTGTTCAAGCAGTTAGTACGAAATACTTGACTCAAGCGGAGGCGGATAACATGAAGAAAATGTATTGGGCTGCTGATACTAAAGCGGTCAATAATTTCACAATGACCACTCAGATCTTCATGGCTGATGCTTCAAAGGTTGGTGATTCTAAAACTGTTGAAATTCTATACATTACGGAAATTTGGAATTCTCATTATTAGTTTAGTCTCCTGGCAAATTTTCAAAGCGTTACGACCACTGGGAGCCGAGATACAGCCATTTGAATTTTCGGCGGCGCGGTCGCGTCGCGGCTCTTCCAAAACTTCAAAGGGCCGTATATCGGCTCCTAGTGGGTCRAACTGGCTGAAATTTTGTAAGAACAGTTATTTCAGCATGGCAAACATTTTGATGTAACAATTATCCTAAGATTCAAAAATCAGATTTTTCATAAAGTTTTCAAAAATTAAGATTTTGACAAAATGTAAACTTCATTGTGTTTCTTATATTTTGTTCAGTCACCTGAAAAAATTTCAAAACGGTTGAACCACTAGGAGCCGAGATACAGCCATCCAAAGCTTTGGGGGTGCGGCGCGGTCGCGTCGCGGTCCTTCAAAATTTCAAAGGGCTGTATCTCGGCTCCCAGTAAACCGAATCTGCTGAAATTTTGTGAGAACAGATATTTTAGCATGAGAAACATTTTTATTAAAAAACATCATGAAATTCAAAAAATTCGATTTTTTATAGATTTTCTAAAATTCGGGTTTTGATTAGATTCTATTTCCACCGTATTCGTCATGTTGAGTTTGGTTCCCTGACAAGTTTTCAGTAGAATCGAACCACTAGAAGCCGAGAAACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATTTGGAATTCTCATTATTAGT</pcr_primer_p1>
		<pcr_primer_p2>TCTGATTTTTGAATCTTAGGATAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GAAATTTGGAATTCTCATTATTAGTTTAGTCTCCTGGCAAATTTTCAAAGCGTTACGACCACTGGGAGCCGAGATACAGCCATTTGAATTTTCGGCGGCGCGGTCGCGTCGCGGCTCTTCCAAAACTTCAAAGGGCCGTATATCGGCTCCTAGTGGGTCAAACTGGCTGAAATTTTGTAAGAACAGTTATTTCAGCATGGCAAACATTTTGATGTAACAATTATCCTAAGATTCAAAAATCAGA</canonical_amplicon>
		<polymorphic_amplicon>GAAATTTGGAATTCTCATTATTAGTTTAGTCTCCTGGCAAATTTTCAAAGCGTTACGACCACTGGGAGCCGAGATACAGCCATTTGAATTTTCGGCGGCGCGGTCGCGTCGCGGCTCTTCCAAAACTTCAAAGGGCCGTATATCGGCTCCTAGTGGGTCRAACTGGCTGAAATTTTGTAAGAACAGTTATTTCAGCATGGCAAACATTTTGATGTAACAATTATCCTAAGATTCAAAAATCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26959</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>59853</contig_pos>
        <strand>+</strand>
        <context>TCRAACTGGC[A/T]GAAATTTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCCAAAACTTCAAAGGGCCGTATATCGGCTCCTAGTGGGTCAAACTGGC</left_flank>
        <right_flank>GAAATTTTGTAAGAACAGTTATTTCAGCATGGCAAACATTTTGATGTAAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACCGTCATCACCAAATGGATTCCAGCCAACTGGAAGGCAGCAGGGGCTACTGTAGATGCCAAGAATCCTCTCACAAAACAGGCCTACGCTCAGAAGAAGGCGTTGACCTTCATAGATTTCAGATTTTCGCTTAAAAAGTACATCAACTATTTGTTTGTTCAAGCAGTTAGTACGAAATACTTGACTCAAGCGGAGGCGGATAACATGAAGAAAATGTATTGGGCTGCTGATACTAAAGCGGTCAATAATTTCACAATGACCACTCAGATCTTCATGGCTGATGCTTCAAAGGTTGGTGATTCTAAAACTGTTGAAATTCTATACATTACGGAAATTTGGAATTCTCATTATTAGTTTAGTCTCCTGGCAAATTTTCAAAGCGTTACGACCACTGGGAGCCGAGATACAGCCATTTGAATTTTCGGCGGCGCGGTCGCGTCGCGGCTCTTCCAAAACTTCAAAGGGCCGTATATCGGCTCCTAGTGGGTCAAACTGGCTGAAATTTTGTAAGAACAGTTATTTCAGCATGGCAAACATTTTGATGTAACAATTATCCTAAGATTCAAAAATCAGATTTTTCATAAAGTTTTCAAAAATTAAGATTTTGACAAAATGTAAACTTCATTGTGTTTCTTATATTTTGTTCAGTCACCTGAAAAAATTTCAAAACGGTTGAACCACTAGGAGCCGAGATACAGCCATCCAAAGCTTTGGGGGTGCGGCGCGGTCGCGTCGCGGTCCTTCAAAATTTCAAAGGGCTGTATCTCGGCTCCCAGTAAACCGAATCTGCTGAAATTTTGTGAGAACAGATATTTTAGCATGAGAAACATTTTTATTAAAAAACATCATGAAATTCAAAAAATTCGATTTTTTATAGATTTTCTAAAATTCGGGTTTTGATTAGATTCTATTTCCACCGTATTCGTCATGTTGAGTTTGGTTCCCTGACAAGTTTTCAGTAGAATCGAACCACTAGAAGCCGAGAAACAGCAATCCAA</canonical>
            <polymorphic>AAACCGTCATCACCAAATGGATTCCAGCCAACTGGAAGGCAGCAGGGGCTACTGTAGATGCCAAGAATCCTCTCACAAAACAGGCCTACGCTCAGAAGAAGGCGTTGACCTTCATAGATTTCAGATTTTCGCTTAAAAAGTACATCAACTATTTGTTTGTTCAAGCAGTTAGTACGAAATACTTGACTCAAGCGGAGGCGGATAACATGAAGAAAATGTATTGGGCTGCTGATACTAAAGCGGTCAATAATTTCACAATGACCACTCAGATCTTCATGGCTGATGCTTCAAAGGTTGGTGATTCTAAAACTGTTGAAATTCTATACATTACGGAAATTTGGAATTCTCATTATTAGTTTAGTCTCCTGGCAAATTTTCAAAGCGTTACGACCACTGGGAGCCGAGATACAGCCATTTGAATTTTCGGCGGCGCGGTCGCGTCGCGGCTCTTCCAAAACTTCAAAGGGCCGTATATCGGCTCCTAGTGGGTCAAACTGGCWGAAATTTTGTAAGAACAGTTATTTCAGCATGGCAAACATTTTGATGTAACAATTATCCTAAGATTCAAAAATCAGATTTTTCATAAAGTTTTCAAAAATTAAGATTTTGACAAAATGTAAACTTCATTGTGTTTCTTATATTTTGTTCAGTCACCTGAAAAAATTTCAAAACGGTTGAACCACTAGGAGCCGAGATACAGCCATCCAAAGCTTTGGGGGTGCGGCGCGGTCGCGTCGCGGTCCTTCAAAATTTCAAAGGGCTGTATCTCGGCTCCCAGTAAACCGAATCTGCTGAAATTTTGTGAGAACAGATATTTTAGCATGAGAAACATTTTTATTAAAAAACATCATGAAATTCAAAAAATTCGATTTTTTATAGATTTTCTAAAATTCGGGTTTTGATTAGATTCTATTTCCACCGTATTCGTCATGTTGAGTTTGGTTCCCTGACAAGTTTTCAGTAGAATCGAACCACTAGAAGCCGAGAAACAGCAATCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>210 191 141 121 54 50 36 35 27 21 21 20 19 11 11 11 11 10</canonical_bands>
                <polymorphic_bands>211 210 141 121 54 50 36 35 27 21 21 19 11 11 11 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATTTGGAATTCTCATTATTAGT</pcr_primer_p1>
		<pcr_primer_p2>TCTGATTTTTGAATCTTAGGATAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GAAATTTGGAATTCTCATTATTAGTTTAGTCTCCTGGCAAATTTTCAAAGCGTTACGACCACTGGGAGCCGAGATACAGCCATTTGAATTTTCGGCGGCGCGGTCGCGTCGCGGCTCTTCCAAAACTTCAAAGGGCCGTATATCGGCTCCTAGTGGGTCAAACTGGCTGAAATTTTGTAAGAACAGTTATTTCAGCATGGCAAACATTTTGATGTAACAATTATCCTAAGATTCAAAAATCAGA</canonical_amplicon>
		<polymorphic_amplicon>GAAATTTGGAATTCTCATTATTAGTTTAGTCTCCTGGCAAATTTTCAAAGCGTTACGACCACTGGGAGCCGAGATACAGCCATTTGAATTTTCGGCGGCGCGGTCGCGTCGCGGCTCTTCCAAAACTTCAAAGGGCCGTATATCGGCTCCTAGTGGGTCAAACTGGCWGAAATTTTGTAAGAACAGTTATTTCAGCATGGCAAACATTTTGATGTAACAATTATCCTAAGATTCAAAAATCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26960</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>59866</contig_pos>
        <strand>+</strand>
        <context>AATTTTGTAA[A/G]AACAGTTATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGGGCCGTATATCGGCTCCTAGTGGGTCAAACTGGCTGAAATTTTGTAA</left_flank>
        <right_flank>AACAGTTATTTCAGCATGGCAAACATTTTGATGTAACAATTATCCTAAGA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATGGATTCCAGCCAACTGGAAGGCAGCAGGGGCTACTGTAGATGCCAAGAATCCTCTCACAAAACAGGCCTACGCTCAGAAGAAGGCGTTGACCTTCATAGATTTCAGATTTTCGCTTAAAAAGTACATCAACTATTTGTTTGTTCAAGCAGTTAGTACGAAATACTTGACTCAAGCGGAGGCGGATAACATGAAGAAAATGTATTGGGCTGCTGATACTAAAGCGGTCAATAATTTCACAATGACCACTCAGATCTTCATGGCTGATGCTTCAAAGGTTGGTGATTCTAAAACTGTTGAAATTCTATACATTACGGAAATTTGGAATTCTCATTATTAGTTTAGTCTCCTGGCAAATTTTCAAAGCGTTACGACCACTGGGAGCCGAGATACAGCCATTTGAATTTTCGGCGGCGCGGTCGCGTCGCGGCTCTTCCAAAACTTCAAAGGGCCGTATATCGGCTCCTAGTGGGTCAAACTGGCTGAAATTTTGTAAGAACAGTTATTTCAGCATGGCAAACATTTTGATGTAACAATTATCCTAAGATTCAAAAATCAGATTTTTCATAAAGTTTTCAAAAATTAAGATTTTGACAAAATGTAAACTTCATTGTGTTTCTTATATTTTGTTCAGTCACCTGAAAAAATTTCAAAACGGTTGAACCACTAGGAGCCGAGATACAGCCATCCAAAGCTTTGGGGGTGCGGCGCGGTCGCGTCGCGGTCCTTCAAAATTTCAAAGGGCTGTATCTCGGCTCCCAGTAAACCGAATCTGCTGAAATTTTGTGAGAACAGATATTTTAGCATGAGAAACATTTTTATTAAAAAACATCATGAAATTCAAAAAATTCGATTTTTTATAGATTTTCTAAAATTCGGGTTTTGATTAGATTCTATTTCCACCGTATTCGTCATGTTGAGTTTGGTTCCCTGACAAGTTTTCAGTAGAATCGAACCACTAGAAGCCGAGAAACAGCAATCCAAAGTTTTGGTGGCG</canonical>
            <polymorphic>CAAATGGATTCCAGCCAACTGGAAGGCAGCAGGGGCTACTGTAGATGCCAAGAATCCTCTCACAAAACAGGCCTACGCTCAGAAGAAGGCGTTGACCTTCATAGATTTCAGATTTTCGCTTAAAAAGTACATCAACTATTTGTTTGTTCAAGCAGTTAGTACGAAATACTTGACTCAAGCGGAGGCGGATAACATGAAGAAAATGTATTGGGCTGCTGATACTAAAGCGGTCAATAATTTCACAATGACCACTCAGATCTTCATGGCTGATGCTTCAAAGGTTGGTGATTCTAAAACTGTTGAAATTCTATACATTACGGAAATTTGGAATTCTCATTATTAGTTTAGTCTCCTGGCAAATTTTCAAAGCGTTACGACCACTGGGAGCCGAGATACAGCCATTTGAATTTTCGGCGGCGCGGTCGCGTCGCGGCTCTTCCAAAACTTCAAAGGGCCGTATATCGGCTCCTAGTGGGTCAAACTGGCTGAAATTTTGTAARAACAGTTATTTCAGCATGGCAAACATTTTGATGTAACAATTATCCTAAGATTCAAAAATCAGATTTTTCATAAAGTTTTCAAAAATTAAGATTTTGACAAAATGTAAACTTCATTGTGTTTCTTATATTTTGTTCAGTCACCTGAAAAAATTTCAAAACGGTTGAACCACTAGGAGCCGAGATACAGCCATCCAAAGCTTTGGGGGTGCGGCGCGGTCGCGTCGCGGTCCTTCAAAATTTCAAAGGGCTGTATCTCGGCTCCCAGTAAACCGAATCTGCTGAAATTTTGTGAGAACAGATATTTTAGCATGAGAAACATTTTTATTAAAAAACATCATGAAATTCAAAAAATTCGATTTTTTATAGATTTTCTAAAATTCGGGTTTTGATTAGATTCTATTTCCACCGTATTCGTCATGTTGAGTTTGGTTCCCTGACAAGTTTTCAGTAGAATCGAACCACTAGAAGCCGAGAAACAGCAATCCAAAGTTTTGGTGGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATTTGGAATTCTCATTATTAGT</pcr_primer_p1>
		<pcr_primer_p2>TCTGATTTTTGAATCTTAGGATAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GAAATTTGGAATTCTCATTATTAGTTTAGTCTCCTGGCAAATTTTCAAAGCGTTACGACCACTGGGAGCCGAGATACAGCCATTTGAATTTTCGGCGGCGCGGTCGCGTCGCGGCTCTTCCAAAACTTCAAAGGGCCGTATATCGGCTCCTAGTGGGTCAAACTGGCTGAAATTTTGTAAGAACAGTTATTTCAGCATGGCAAACATTTTGATGTAACAATTATCCTAAGATTCAAAAATCAGA</canonical_amplicon>
		<polymorphic_amplicon>GAAATTTGGAATTCTCATTATTAGTTTAGTCTCCTGGCAAATTTTCAAAGCGTTACGACCACTGGGAGCCGAGATACAGCCATTTGAATTTTCGGCGGCGCGGTCGCGTCGCGGCTCTTCCAAAACTTCAAAGGGCCGTATATCGGCTCCTAGTGGGTCAAACTGGCTGAAATTTTGTAARAACAGTTATTTCAGCATGGCAAACATTTTGATGTAACAATTATCCTAAGATTCAAAAATCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26961</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>65132</contig_pos>
        <strand>+</strand>
        <context>AAAGTCTAAC[A/G]AAAAACAGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCACATAAAACAGAAAAGAGCAAACATATAGCCAGAACGAAAAGTCTAAC</left_flank>
        <right_flank>AAAAACAGGAAAAAAATTAGCTAATGTACCGGAAATTAAGTCATTTCCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTTCACCAAATTCCAGCGTTCTAGCTCTTCTGTGACCCGAGTTGTAGCCGTTTGAAAAATGATGGATGCGGCGCGGTCGCGTCGCGGCTCGCCTTAAACTTGAAAGCACCGTATCTAGGCTCCTAGAGCTCGGAATGAGCTCAAATTTTGTGTGGACAAAGAAAATAAAAGTGCAAATTTGTGCAGCAATTTTAACCTAGAAAATCGGAAATTTTTCAAATTCTTCAAAACATGCTATTTTTGATTTTTGAGCACAAATTTGGTAGAAATATGTATATTTGCCAAATCTGCGGTCTCACCAAGTTTCAGTCTTTTGGCTTGTCTGGGAGTCGAATTATAGCCATTTGAAAAAAGTGGCGTGCGGCGCGGTCGCGTAGCGGCTCACCTTCAAGTTCAAAGTGGCATATCTCAGTTCCTAGAGCTCGGATTGAGCCCGAATTTTGTGAGCACATAAAACAGAAAAGAGCAAACATATAGCCAGAACGAAAAGTCTAACAAAAAACAGGAAAAAAATTAGCTAATGTACCGGAAATTAAGTCATTTCCTTGTCTATGTATTATCATTTTCTTTCTAGTTTTTCATCATTTTTTTCACATAAAAAGAGCAATGAAAATACCCCAAAAATATATAGAAACTATTGAAAAAATCAATAGTTATTTGGCATTGCTCACTCTTACCATCCTACTGTACCTCATCATCTTTAAATCTCCCCACCGTCTGGGCACCTATAAATATCTAATGACCTATTTATCGATTTTTGAAATGGTTTACGCCGGTCTAATGATTTTGAGCTTACCGCAAATTTATACAAAGGATTCGGGCTTTTTTGTGGTTATGAATAGAAATGTGACTGGAGAGAATTTCCGGATTTTTAACATTTTCTATTTTGCAATGTTTTCCACTTCAATGGCTAATTTCAGTGTACATTTTGTTTATAGATTTTTGGCGATCAAGGGGTGAGATTTGTACTGATATTTTGTCAAAACAATAAACAGGT</canonical>
            <polymorphic>CATTTTCACCAAATTCCAGCGTTCTAGCTCTTCTGTGACCCGAGTTGTAGCCGTTTGAAAAATGATGGATGCGGCGCGGTCGCGTCGCGGCTCGCCTTAAACTTGAAAGCACCGTATCTAGGCTCCTAGAGCTCGGAATGAGCTCAAATTTTGTGTGGACAAAGAAAATAAAAGTGCAAATTTGTGCAGCAATTTTAACCTAGAAAATCGGAAATTTTTCAAATTCTTCAAAACATGCTATTTTTGATTTTTGAGCACAAATTTGGTAGAAATATGTATATTTGCCAAATCTGCGGTCTCACCAAGTTTCAGTCTTTTGGCTTGTCTGGGAGTCGAATTATAGCCATTTGAAAAAAGTGGCGTGCGGCGCGGTCGCGTAGCGGCTCACCTTCAAGTTCAAAGTGGCATATCTCAGTTCCTAGAGCTCGGATTGAGCCCGAATTTTGTGAGCACATAAAACAGAAAAGAGCAAACATATAGCCAGAACGAAAAGTCTAACRAAAAACAGGAAAAAAATTAGCTAATGTACCGGAAATTAAGTCATTTCCTTGTCTATGTATTATCATTTTCTTTCTAGTTTTTCATCATTTTTTTCACATAAAAAGAGCAATGAAAATACCCCAAAAATATATAGAAACTATTGAAAAAATCAATAGTTATTTGGCATTGCTCACTCTTACCATCCTACTGTACCTCATCATCTTTAAATCTCCCCACCGTCTGGGCACCTATAAATATCTAATGACCTATTTATCGATTTTTGAAATGGTTTACGCCGGTCTAATGATTTTGAGCTTACCGCAAATTTATACAAAGGATTCGGGCTTTTTTGTGGTTATGAATAGAAATGTGACTGGAGAGAATTTCCGGATTTTTAACATTTTCTATTTTGCAATGTTTTCCACTTCAATGGCTAATTTCAGTGTACATTTTGTTTATAGATTTTTGGCGATCAAGGGGTGAGATTTGTACTGATATTTTGTCAAAACAATAAACAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCACATAAAACAGAAAAGAGC</pcr_primer_p1>
		<pcr_primer_p2>TGAGGTACAGTAGGATGGTAAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGCACATAAAACAGAAAAGAGCAAACATATAGCCAGAACGAAAAGTCTAACAAAAAACAGGAAAAAAATTAGCTAATGTACCGGAAATTAAGTCATTTCCTTGTCTATGTATTATCATTTTCTTTCTAGTTTTTCATCATTTTTTTCACATAAAAAGAGCAATGAAAATACCCCAAAAATATATAGAAACTATTGAAAAAATCAATAGTTATTTGGCATTGCTCACTCTTACCATCCTACTGTACCTCA</canonical_amplicon>
		<polymorphic_amplicon>AGCACATAAAACAGAAAAGAGCAAACATATAGCCAGAACGAAAAGTCTAACRAAAAACAGGAAAAAAATTAGCTAATGTACCGGAAATTAAGTCATTTCCTTGTCTATGTATTATCATTTTCTTTCTAGTTTTTCATCATTTTTTTCACATAAAAAGAGCAATGAAAATACCCCAAAAATATATAGAAACTATTGAAAAAATCAATAGTTATTTGGCATTGCTCACTCTTACCATCCTACTGTACCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26962</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>67301</contig_pos>
        <strand></strand>
        <context>gwgcggcgcg[A/G]tcgcgtcgcg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCG</left_flank>
        <right_flank>TCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAG</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGAAGGAGGAGACAAAAAAAAAACAGCATATTTTCAGATGGAATTTCCTCGAATTCTAGAAATTTGTGCAGAAAACCGAATACACCACGAGAAAGCCCGTATTCGAAACTATAAATGAGCTAATTTAGAAGAAATTCTGAGATGAAGGCTAAACATGGTTCCCTTATGAGTTATGGTCTTTTGAAAAATGAGGGACGCGGCGCGGTCGCGTCGCGGCTGCTGTCTATAGCAAAAGGCTCGTAACTTGGGTTCTAGGTGTCCAAAAGCGCTGCGAATTGGCGAGGACTCAGAAATTATGCAAGGAAGCATATTTTTCAGTTTTCAGCTTTTTCCTCTAACTTTCAGTTTTTTTTTTGAAAATTTTCAAGTTACGAATTTTTGGCTCGAAATTGGTTTACATGATAATGCTAGTAAAAACAACGTTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTC</canonical>
            <polymorphic>GGGAAGGAGGAGACAAAAAAAAAACAGCATATTTTCAGATGGAATTTCCTCGAATTCTAGAAATTTGTGCAGAAAACCGAATACACCACGAGAAAGCCCGTATTCGAAACTATAAATGAGCTAATTTAGAAGAAATTCTGAGATGAAGGCTAAACATGGTTCCCTTATGAGTTATGGTCTTTTGAAAAATGAGGGACGCGGCGCGGTCGCGTCGCGGCTGCTGTCTATAGCAAAAGGCTCGTAACTTGGGTTCTAGGTGTCCAAAAGCGCTGCGAATTGGCGAGGACTCAGAAATTATGCAAGGAAGCATATTTTTCAGTTTTCAGCTTTTTCCTCTAACTTTCAGTTTTTTTTTTGAAAATTTTCAAGTTACGAATTTTTGGCTCGAAATTGGTTTACATGATAATGCTAGTAAAAACAACGTTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGRTCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGATCGC</site>
                <isoschizomers>
                    <enzyme>AsiSI</enzyme>
                    <enzyme>SgfI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>294 290 209 207</canonical_bands>
                <polymorphic_bands>584 209 207</polymorphic_bands>
            </assay>
            <assay>
                <site>CGATCG</site>
                <isoschizomers>
                    <enzyme>BspCI</enzyme>
                    <enzyme>Ple19I</enzyme>
                    <enzyme>PvuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCCTCTAACTTTCAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTCATAAAATTTCACCTCAACAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCCTCTAACTTTCAGTTTTTTTTTTGAAAATTTTCAAGTTACGAATTTTTGGCTCGAAATTGGTTTACATGATAATGCTAGTAAAAACAACGTTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCCTCTAACTTTCAGTTTTTTTTTTGAAAATTTTCAAGTTACGAATTTTTGGCTCGAAATTGGTTTACATGATAATGCTAGTAAAAACAACGTTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGRTCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26963</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>67347</contig_pos>
        <strand></strand>
        <context>tatctcagct[G/C]ctagaGTTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCT</left_flank>
        <right_flank>CTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAG</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTCGAATTCTAGAAATTTGTGCAGAAAACCGAATACACCACGAGAAAGCCCGTATTCGAAACTATAAATGAGCTAATTTAGAAGAAATTCTGAGATGAAGGCTAAACATGGTTCCCTTATGAGTTATGGTCTTTTGAAAAATGAGGGACGCGGCGCGGTCGCGTCGCGGCTGCTGTCTATAGCAAAAGGCTCGTAACTTGGGTTCTAGGTGTCCAAAAGCGCTGCGAATTGGCGAGGACTCAGAAATTATGCAAGGAAGCATATTTTTCAGTTTTCAGCTTTTTCCTCTAACTTTCAGTTTTTTTTTTGAAAATTTTCAAGTTACGAATTTTTGGCTCGAAATTGGTTTACATGATAATGCTAGTAAAAACAACGTTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAA</canonical>
            <polymorphic>TCCTCGAATTCTAGAAATTTGTGCAGAAAACCGAATACACCACGAGAAAGCCCGTATTCGAAACTATAAATGAGCTAATTTAGAAGAAATTCTGAGATGAAGGCTAAACATGGTTCCCTTATGAGTTATGGTCTTTTGAAAAATGAGGGACGCGGCGCGGTCGCGTCGCGGCTGCTGTCTATAGCAAAAGGCTCGTAACTTGGGTTCTAGGTGTCCAAAAGCGCTGCGAATTGGCGAGGACTCAGAAATTATGCAAGGAAGCATATTTTTCAGTTTTCAGCTTTTTCCTCTAACTTTCAGTTTTTTTTTTGAAAATTTTCAAGTTACGAATTTTTGGCTCGAAATTGGTTTACATGATAATGCTAGTAAAAACAACGTTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTSCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>245 239 223 155 55 35 16 16 16</canonical_bands>
                <polymorphic_bands>274 245 223 155 55 16 16 16</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>274 264 239 171 52</canonical_bands>
                <polymorphic_bands>513 264 171 52</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGCTAGTAAAAACAACGTTTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATGAAAATTGGAGAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AATGCTAGTAAAAACAACGTTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTT</canonical_amplicon>
		<polymorphic_amplicon>AATGCTAGTAAAAACAACGTTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTSCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26964</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>67671</contig_pos>
        <strand>+</strand>
        <context>ATTTGTGAGG[C/T]TMTTTAKAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGG</left_flank>
        <right_flank>TGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACGAATTTTTGGCTCGAAATTGGTTTACATGATAATGCTAGTAAAAACAACGTTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAATTTAACATTCATTAATTTAGGTACAAGTCCTGGACCCAATTTAGTCCCTCAAAACTATTGATCTATATTTCTTGTCCTCTAATTGTTGGCATAGCGGATACGGTAGTTGTAATCACATTTTGGGGTGAAAATGAGTCAACGCAGTGGTTTATGAGGCAGGTCATGTGGTAGTAAATCAAAACAAAGAATTTTTCCAGAATGAAAATTTCTGAAAATTTGGAAAATTTGAGTTTCATTGGGTTTTGTATTATTGCACAAGACGAAAACTCAATAAAGTATATAAATTGGCATAGTATAATTGGTATAGCAGCTGCTTGTCTATTA</canonical>
            <polymorphic>TACGAATTTTTGGCTCGAAATTGGTTTACATGATAATGCTAGTAAAAACAACGTTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGYTGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAATTTAACATTCATTAATTTAGGTACAAGTCCTGGACCCAATTTAGTCCCTCAAAACTATTGATCTATATTTCTTGTCCTCTAATTGTTGGCATAGCGGATACGGTAGTTGTAATCACATTTTGGGGTGAAAATGAGTCAACGCAGTGGTTTATGAGGCAGGTCATGTGGTAGTAAATCAAAACAAAGAATTTTTCCAGAATGAAAATTTCTGAAAATTTGGAAAATTTGAGTTTCATTGGGTTTTGTATTATTGCACAAGACGAAAACTCAATAAAGTATATAAATTGGCATAGTATAATTGGTATAGCAGCTGCTTGTCTATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTTATGGCCACTTGAAGA</pcr_primer_p1>
		<pcr_primer_p2>AGAGAAATTAGTCCATGGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCT</canonical_amplicon>
		<polymorphic_amplicon>GAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGYTGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26965</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>67673</contig_pos>
        <strand>+</strand>
        <context>TTGTGAGGYT[A/C]TTTAKAAAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGAT</left_flank>
        <right_flank>TTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAATTTTTGGCTCGAAATTGGTTTACATGATAATGCTAGTAAAAACAACGTTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAATTTAACATTCATTAATTTAGGTACAAGTCCTGGACCCAATTTAGTCCCTCAAAACTATTGATCTATATTTCTTGTCCTCTAATTGTTGGCATAGCGGATACGGTAGTTGTAATCACATTTTGGGGTGAAAATGAGTCAACGCAGTGGTTTATGAGGCAGGTCATGTGGTAGTAAATCAAAACAAAGAATTTTTCCAGAATGAAAATTTCTGAAAATTTGGAAAATTTGAGTTTCATTGGGTTTTGTATTATTGCACAAGACGAAAACTCAATAAAGTATATAAATTGGCATAGTATAATTGGTATAGCAGCTGCTTGTCTATTAAT</canonical>
            <polymorphic>CGAATTTTTGGCTCGAAATTGGTTTACATGATAATGCTAGTAAAAACAACGTTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATMTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAATTTAACATTCATTAATTTAGGTACAAGTCCTGGACCCAATTTAGTCCCTCAAAACTATTGATCTATATTTCTTGTCCTCTAATTGTTGGCATAGCGGATACGGTAGTTGTAATCACATTTTGGGGTGAAAATGAGTCAACGCAGTGGTTTATGAGGCAGGTCATGTGGTAGTAAATCAAAACAAAGAATTTTTCCAGAATGAAAATTTCTGAAAATTTGGAAAATTTGAGTTTCATTGGGTTTTGTATTATTGCACAAGACGAAAACTCAATAAAGTATATAAATTGGCATAGTATAATTGGTATAGCAGCTGCTTGTCTATTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTTATGGCCACTTGAAGA</pcr_primer_p1>
		<pcr_primer_p2>AGAGAAATTAGTCCATGGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCT</canonical_amplicon>
		<polymorphic_amplicon>GAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATMTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26966</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>67678</contig_pos>
        <strand>+</strand>
        <context>AGGYTMTTTA[G/T]AAAGCGATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTA</left_flank>
        <right_flank>AAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGGCTCGAAATTGGTTTACATGATAATGCTAGTAAAAACAACGTTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAATTTAACATTCATTAATTTAGGTACAAGTCCTGGACCCAATTTAGTCCCTCAAAACTATTGATCTATATTTCTTGTCCTCTAATTGTTGGCATAGCGGATACGGTAGTTGTAATCACATTTTGGGGTGAAAATGAGTCAACGCAGTGGTTTATGAGGCAGGTCATGTGGTAGTAAATCAAAACAAAGAATTTTTCCAGAATGAAAATTTCTGAAAATTTGGAAAATTTGAGTTTCATTGGGTTTTGTATTATTGCACAAGACGAAAACTCAATAAAGTATATAAATTGGCATAGTATAATTGGTATAGCAGCTGCTTGTCTATTAATTGTGA</canonical>
            <polymorphic>TTTTGGCTCGAAATTGGTTTACATGATAATGCTAGTAAAAACAACGTTTCCACAAATTTTCAGCCTTCTAGCGCATTTGGGAGTCAAGTTATAGCCATTTGAAAAATGAGAGGTGCGGCGCGATCGCGTCGCGGCTCACCTTAAACTTCAAAGCACCGTATCTCAGCTGCTAGAGTTCGTGTTGAGGTGAAATTTTATGAGGGTTCAGAAGTTATTAAGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAKAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAATTTAACATTCATTAATTTAGGTACAAGTCCTGGACCCAATTTAGTCCCTCAAAACTATTGATCTATATTTCTTGTCCTCTAATTGTTGGCATAGCGGATACGGTAGTTGTAATCACATTTTGGGGTGAAAATGAGTCAACGCAGTGGTTTATGAGGCAGGTCATGTGGTAGTAAATCAAAACAAAGAATTTTTCCAGAATGAAAATTTCTGAAAATTTGGAAAATTTGAGTTTCATTGGGTTTTGTATTATTGCACAAGACGAAAACTCAATAAAGTATATAAATTGGCATAGTATAATTGGTATAGCAGCTGCTTGTCTATTAATTGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>433 416 65 60 26</canonical_bands>
                <polymorphic_bands>433 416 125 26</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>310 141 124 88 77 74 65 60 26 16 10 9</canonical_bands>
                <polymorphic_bands>310 141 125 124 88 77 74 26 16 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTTATGGCCACTTGAAGA</pcr_primer_p1>
		<pcr_primer_p2>AGAGAAATTAGTCCATGGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCT</canonical_amplicon>
		<polymorphic_amplicon>GAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAKAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26967</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>67895</contig_pos>
        <strand>+</strand>
        <context>AATTTAGTCC[C/T]TCAAAACTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTTAACATTCATTAATTTAGGTACAAGTCCTGGACCCAATTTAGTCC</left_flank>
        <right_flank>TCAAAACTATTGATCTATATTTCTTGTCCTCTAATTGTTGGCATAGCGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAATTTAACATTCATTAATTTAGGTACAAGTCCTGGACCCAATTTAGTCCCTCAAAACTATTGATCTATATTTCTTGTCCTCTAATTGTTGGCATAGCGGATACGGTAGTTGTAATCACATTTTGGGGTGAAAATGAGTCAACGCAGTGGTTTATGAGGCAGGTCATGTGGTAGTAAATCAAAACAAAGAATTTTTCCAGAATGAAAATTTCTGAAAATTTGGAAAATTTGAGTTTCATTGGGTTTTGTATTATTGCACAAGACGAAAACTCAATAAAGTATATAAATTGGCATAGTATAATTGGTATAGCAGCTGCTTGTCTATTAATTGTGAGTTTTTGGACGCGACGCGGTCGCGAAGCGGTCTAAAAGAAAAGTTTCCAGACGTTTTCGATGATTATCATGTTATATTTTGGAATCAAATGCTACTCGGCTATACGAAACTTGACCAACATTTCTACAGTATCCCAAAATTATCGATCGATTCAAAATCAGTTATTTTTTGCTTTAGTTATTCAAACAGCCATTCCTCTCATCCTTATGCACCTTCC</canonical>
            <polymorphic>AGATAAACATATTTTCCAATTTTCAGGCTTTTTCTCCAATTTTCATTTTTTTTGAAATTTTTGAAATACGCTTTTTAAGCCCAAGCTTGATTAAAACAATCATGCTAGTAAAATTCACGTTCTCACAAAGTTTCAACCTAGTAGCTCATCTGTGAGTCGAGTTATGGCCACTTGAAGAAAAAGGGGTGCAGCGCGGTCGCGTCGCGGCCTCTGTTTAAAGAAAAAGGCGCGTAACTTGGGTTCTAGGTGCCCAAAAGCGCTGAAAATTTGTGAGGATGTTTAAAAAGCGATTTCAAATATCTTTGCGAATTTTCAGCCAGAAAAAACAAATTTGAAATTTTAAAGAAATTTTTTTGGCTCATTTTTTAAAACCCTCGTATCTCGGCTCACCATGGACTAATTTCTCTGGAATTTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAATTTAACATTCATTAATTTAGGTACAAGTCCTGGACCCAATTTAGTCCYTCAAAACTATTGATCTATATTTCTTGTCCTCTAATTGTTGGCATAGCGGATACGGTAGTTGTAATCACATTTTGGGGTGAAAATGAGTCAACGCAGTGGTTTATGAGGCAGGTCATGTGGTAGTAAATCAAAACAAAGAATTTTTCCAGAATGAAAATTTCTGAAAATTTGGAAAATTTGAGTTTCATTGGGTTTTGTATTATTGCACAAGACGAAAACTCAATAAAGTATATAAATTGGCATAGTATAATTGGTATAGCAGCTGCTTGTCTATTAATTGTGAGTTTTTGGACGCGACGCGGTCGCGAAGCGGTCTAAAAGAAAAGTTTCCAGACGTTTTCGATGATTATCATGTTATATTTTGGAATCAAATGCTACTCGGCTATACGAAACTTGACCAACATTTCTACAGTATCCCAAAATTATCGATCGATTCAAAATCAGTTATTTTTTGCTTTAGTTATTCAAACAGCCATTCCTCTCATCCTTATGCACCTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTCGAAAAATCTTCGTTATAC</pcr_primer_p1>
		<pcr_primer_p2>AGAAATTTTCATTCTGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAATTTAACATTCATTAATTTAGGTACAAGTCCTGGACCCAATTTAGTCCCTCAAAACTATTGATCTATATTTCTTGTCCTCTAATTGTTGGCATAGCGGATACGGTAGTTGTAATCACATTTTGGGGTGAAAATGAGTCAACGCAGTGGTTTATGAGGCAGGTCATGTGGTAGTAAATCAAAACAAAGAATTTTTCCAGAATGAAAATTTCT</canonical_amplicon>
		<polymorphic_amplicon>TTGTCGAAAAATCTTCGTTATACACTGAAGATCCTGAAAATTTAACATTCATTAATTTAGGTACAAGTCCTGGACCCAATTTAGTCCYTCAAAACTATTGATCTATATTTCTTGTCCTCTAATTGTTGGCATAGCGGATACGGTAGTTGTAATCACATTTTGGGGTGAAAATGAGTCAACGCAGTGGTTTATGAGGCAGGTCATGTGGTAGTAAATCAAAACAAAGAATTTTTCCAGAATGAAAATTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26968</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>76061</contig_pos>
        <strand></strand>
        <context>GACATGAAAA[A/C]AATWATGTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAA</left_flank>
        <right_flank>AATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGGTGAGTTTCAAAGAGGTTAAGGTTAAGATTTGATTTTGGGAAACAAGAAATATGGGATTGTGACTCGGGATGGCCGGAAAAGTACTAAACCTGTAATAGAAAGGCCCCTCTCCACACGGTCCCCACTAGGAAGACCGCCACAAGTTTGAGCTCAATTATCTCGGCTGCTATGAGAGATATCAAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAG</canonical>
            <polymorphic>TTTGGGTGAGTTTCAAAGAGGTTAAGGTTAAGATTTGATTTTGGGAAACAAGAAATATGGGATTGTGACTCGGGATGGCCGGAAAAGTACTAAACCTGTAATAGAAAGGCCCCTCTCCACACGGTCCCCACTAGGAAGACCGCCACAAGTTTGAGCTCAATTATCTCGGCTGCTATGAGAGATATCAAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAMAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGGAAAAGTACTAAACCTGTA</pcr_primer_p1>
		<pcr_primer_p2>TACAACGCTTAATGTCACTCTG</pcr_primer_p2>
		<pcr_amplicon_size>601</pcr_amplicon_size>
		<canonical_amplicon>CCGGAAAAGTACTAAACCTGTAATAGAAAGGCCCCTCTCCACACGGTCCCCACTAGGAAGACCGCCACAAGTTTGAGCTCAATTATCTCGGCTGCTATGAGAGATATCAAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTA</canonical_amplicon>
		<polymorphic_amplicon>CCGGAAAAGTACTAAACCTGTAATAGAAAGGCCCCTCTCCACACGGTCCCCACTAGGAAGACCGCCACAAGTTTGAGCTCAATTATCTCGGCTGCTATGAGAGATATCAAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAMAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26969</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>76065</contig_pos>
        <strand></strand>
        <context>TGAAAAMAAT[T/A]ATGTTCTCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAAT</left_flank>
        <right_flank>ATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTG</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTGAGTTTCAAAGAGGTTAAGGTTAAGATTTGATTTTGGGAAACAAGAAATATGGGATTGTGACTCGGGATGGCCGGAAAAGTACTAAACCTGTAATAGAAAGGCCCCTCTCCACACGGTCCCCACTAGGAAGACCGCCACAAGTTTGAGCTCAATTATCTCGGCTGCTATGAGAGATATCAAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTT</canonical>
            <polymorphic>GGTGAGTTTCAAAGAGGTTAAGGTTAAGATTTGATTTTGGGAAACAAGAAATATGGGATTGTGACTCGGGATGGCCGGAAAAGTACTAAACCTGTAATAGAAAGGCCCCTCTCCACACGGTCCCCACTAGGAAGACCGCCACAAGTTTGAGCTCAATTATCTCGGCTGCTATGAGAGATATCAAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATWATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>416 212 154 48 48 46 24 19 14 12 7</canonical_bands>
                <polymorphic_bands>416 226 154 48 48 46 24 19 12 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGGAAAAGTACTAAACCTGTA</pcr_primer_p1>
		<pcr_primer_p2>TACAACGCTTAATGTCACTCTG</pcr_primer_p2>
		<pcr_amplicon_size>601</pcr_amplicon_size>
		<canonical_amplicon>CCGGAAAAGTACTAAACCTGTAATAGAAAGGCCCCTCTCCACACGGTCCCCACTAGGAAGACCGCCACAAGTTTGAGCTCAATTATCTCGGCTGCTATGAGAGATATCAAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTA</canonical_amplicon>
		<polymorphic_amplicon>CCGGAAAAGTACTAAACCTGTAATAGAAAGGCCCCTCTCCACACGGTCCCCACTAGGAAGACCGCCACAAGTTTGAGCTCAATTATCTCGGCTGCTATGAGAGATATCAAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATWATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26970</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>76085</contig_pos>
        <strand></strand>
        <context>AAatttcgtt[C/T]aaatatgccy</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTT</left_flank>
        <right_flank>AAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCG</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTTAAGATTTGATTTTGGGAAACAAGAAATATGGGATTGTGACTCGGGATGGCCGGAAAAGTACTAAACCTGTAATAGAAAGGCCCCTCTCCACACGGTCCCCACTAGGAAGACCGCCACAAGTTTGAGCTCAATTATCTCGGCTGCTATGAGAGATATCAAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAAT</canonical>
            <polymorphic>AGGTTAAGATTTGATTTTGGGAAACAAGAAATATGGGATTGTGACTCGGGATGGCCGGAAAAGTACTAAACCTGTAATAGAAAGGCCCCTCTCCACACGGTCCCCACTAGGAAGACCGCCACAAGTTTGAGCTCAATTATCTCGGCTGCTATGAGAGATATCAAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTYAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGGAAAAGTACTAAACCTGTA</pcr_primer_p1>
		<pcr_primer_p2>TACAACGCTTAATGTCACTCTG</pcr_primer_p2>
		<pcr_amplicon_size>601</pcr_amplicon_size>
		<canonical_amplicon>CCGGAAAAGTACTAAACCTGTAATAGAAAGGCCCCTCTCCACACGGTCCCCACTAGGAAGACCGCCACAAGTTTGAGCTCAATTATCTCGGCTGCTATGAGAGATATCAAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTA</canonical_amplicon>
		<polymorphic_amplicon>CCGGAAAAGTACTAAACCTGTAATAGAAAGGCCCCTCTCCACACGGTCCCCACTAGGAAGACCGCCACAAGTTTGAGCTCAATTATCTCGGCTGCTATGAGAGATATCAAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTYAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26971</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>76095</contig_pos>
        <strand></strand>
        <context>yaaatatgcc[C/T]cycgaggagt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCC</left_flank>
        <right_flank>CTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTAC</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGATTTTGGGAAACAAGAAATATGGGATTGTGACTCGGGATGGCCGGAAAAGTACTAAACCTGTAATAGAAAGGCCCCTCTCCACACGGTCCCCACTAGGAAGACCGCCACAAGTTTGAGCTCAATTATCTCGGCTGCTATGAGAGATATCAAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGA</canonical>
            <polymorphic>TTGATTTTGGGAAACAAGAAATATGGGATTGTGACTCGGGATGGCCGGAAAAGTACTAAACCTGTAATAGAAAGGCCCCTCTCCACACGGTCCCCACTAGGAAGACCGCCACAAGTTTGAGCTCAATTATCTCGGCTGCTATGAGAGATATCAAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCYCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGGAAAAGTACTAAACCTGTA</pcr_primer_p1>
		<pcr_primer_p2>TACAACGCTTAATGTCACTCTG</pcr_primer_p2>
		<pcr_amplicon_size>601</pcr_amplicon_size>
		<canonical_amplicon>CCGGAAAAGTACTAAACCTGTAATAGAAAGGCCCCTCTCCACACGGTCCCCACTAGGAAGACCGCCACAAGTTTGAGCTCAATTATCTCGGCTGCTATGAGAGATATCAAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTA</canonical_amplicon>
		<polymorphic_amplicon>CCGGAAAAGTACTAAACCTGTAATAGAAAGGCCCCTCTCCACACGGTCCCCACTAGGAAGACCGCCACAAGTTTGAGCTCAATTATCTCGGCTGCTATGAGAGATATCAAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCYCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26972</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>76097</contig_pos>
        <strand></strand>
        <context>aatatgccyc[T/C]cgaggagttg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCC</left_flank>
        <right_flank>CGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCG</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTTGGGAAACAAGAAATATGGGATTGTGACTCGGGATGGCCGGAAAAGTACTAAACCTGTAATAGAAAGGCCCCTCTCCACACGGTCCCCACTAGGAAGACCGCCACAAGTTTGAGCTCAATTATCTCGGCTGCTATGAGAGATATCAAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAA</canonical>
            <polymorphic>GATTTTGGGAAACAAGAAATATGGGATTGTGACTCGGGATGGCCGGAAAAGTACTAAACCTGTAATAGAAAGGCCCCTCTCCACACGGTCCCCACTAGGAAGACCGCCACAAGTTTGAGCTCAATTATCTCGGCTGCTATGAGAGATATCAAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCYCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 466 33</canonical_bands>
                <polymorphic_bands>967 33</polymorphic_bands>
            </assay>
            <assay>
                <site>CTCGAG</site>
                <isoschizomers>
                    <enzyme>BssHI</enzyme>
                    <enzyme>PaeR7I</enzyme>
                    <enzyme>SciI</enzyme>
                    <enzyme>Sfr274I</enzyme>
                    <enzyme>SlaI</enzyme>
                    <enzyme>TliI</enzyme>
                    <enzyme>XhoI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 476 25</canonical_bands>
                <polymorphic_bands>524 476</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGGAAAAGTACTAAACCTGTA</pcr_primer_p1>
		<pcr_primer_p2>TACAACGCTTAATGTCACTCTG</pcr_primer_p2>
		<pcr_amplicon_size>601</pcr_amplicon_size>
		<canonical_amplicon>CCGGAAAAGTACTAAACCTGTAATAGAAAGGCCCCTCTCCACACGGTCCCCACTAGGAAGACCGCCACAAGTTTGAGCTCAATTATCTCGGCTGCTATGAGAGATATCAAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTA</canonical_amplicon>
		<polymorphic_amplicon>CCGGAAAAGTACTAAACCTGTAATAGAAAGGCCCCTCTCCACACGGTCCCCACTAGGAAGACCGCCACAAGTTTGAGCTCAATTATCTCGGCTGCTATGAGAGATATCAAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCYCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26973</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>76118</contig_pos>
        <strand></strand>
        <context>aacgtgtggg[G/A]cgaggattga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGG</left_flank>
        <right_flank>CGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGATTGTGACTCGGGATGGCCGGAAAAGTACTAAACCTGTAATAGAAAGGCCCCTCTCCACACGGTCCCCACTAGGAAGACCGCCACAAGTTTGAGCTCAATTATCTCGGCTGCTATGAGAGATATCAAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCA</canonical>
            <polymorphic>TGGGATTGTGACTCGGGATGGCCGGAAAAGTACTAAACCTGTAATAGAAAGGCCCCTCTCCACACGGTCCCCACTAGGAAGACCGCCACAAGTTTGAGCTCAATTATCTCGGCTGCTATGAGAGATATCAAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGRCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGGAAAAGTACTAAACCTGTA</pcr_primer_p1>
		<pcr_primer_p2>TACAACGCTTAATGTCACTCTG</pcr_primer_p2>
		<pcr_amplicon_size>601</pcr_amplicon_size>
		<canonical_amplicon>CCGGAAAAGTACTAAACCTGTAATAGAAAGGCCCCTCTCCACACGGTCCCCACTAGGAAGACCGCCACAAGTTTGAGCTCAATTATCTCGGCTGCTATGAGAGATATCAAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTA</canonical_amplicon>
		<polymorphic_amplicon>CCGGAAAAGTACTAAACCTGTAATAGAAAGGCCCCTCTCCACACGGTCCCCACTAGGAAGACCGCCACAAGTTTGAGCTCAATTATCTCGGCTGCTATGAGAGATATCAAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGRCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26974</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>76137</contig_pos>
        <strand></strand>
        <context>gagggtgcgg[A/C]gccgctaccg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGG</left_flank>
        <right_flank>GCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCCGGAAAAGTACTAAACCTGTAATAGAAAGGCCCCTCTCCACACGGTCCCCACTAGGAAGACCGCCACAAGTTTGAGCTCAATTATCTCGGCTGCTATGAGAGATATCAAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGA</canonical>
            <polymorphic>GGCCGGAAAAGTACTAAACCTGTAATAGAAAGGCCCCTCTCCACACGGTCCCCACTAGGAAGACCGCCACAAGTTTGAGCTCAATTATCTCGGCTGCTATGAGAGATATCAAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGMGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>265 139 82 73 69 58 57 46 44 37 33 31 29 15 14 6 2</canonical_bands>
                <polymorphic_bands>280 139 82 73 69 58 57 46 44 37 33 31 29 14 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGGAAAAGTACTAAACCTGTA</pcr_primer_p1>
		<pcr_primer_p2>TACAACGCTTAATGTCACTCTG</pcr_primer_p2>
		<pcr_amplicon_size>601</pcr_amplicon_size>
		<canonical_amplicon>CCGGAAAAGTACTAAACCTGTAATAGAAAGGCCCCTCTCCACACGGTCCCCACTAGGAAGACCGCCACAAGTTTGAGCTCAATTATCTCGGCTGCTATGAGAGATATCAAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTA</canonical_amplicon>
		<polymorphic_amplicon>CCGGAAAAGTACTAAACCTGTAATAGAAAGGCCCCTCTCCACACGGTCCCCACTAGGAAGACCGCCACAAGTTTGAGCTCAATTATCTCGGCTGCTATGAGAGATATCAAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGMGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26975</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>76188</contig_pos>
        <strand></strand>
        <context>CGCCCGATTG[G/C]ATACATAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTG</left_flank>
        <right_flank>ATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACTAGGAAGACCGCCACAAGTTTGAGCTCAATTATCTCGGCTGCTATGAGAGATATCAAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCA</canonical>
            <polymorphic>CCACTAGGAAGACCGCCACAAGTTTGAGCTCAATTATCTCGGCTGCTATGAGAGATATCAAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGSATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGGAAAAGTACTAAACCTGTA</pcr_primer_p1>
		<pcr_primer_p2>TGTACAACGCTTAATGTCACTC</pcr_primer_p2>
		<pcr_amplicon_size>603</pcr_amplicon_size>
		<canonical_amplicon>GGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACA</canonical_amplicon>
		<polymorphic_amplicon>GSATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26976</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>76212</contig_pos>
        <strand></strand>
        <context>AGGACGACAG[C/T]TGTACGCAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAG</left_flank>
        <right_flank>TGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGCTCAATTATCTCGGCTGCTATGAGAGATATCAAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTA</canonical>
            <polymorphic>TGAGCTCAATTATCTCGGCTGCTATGAGAGATATCAAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGYTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>388 346 58 58 57 56 33 4</canonical_bands>
                <polymorphic_bands>388 346 115 58 56 33 4</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>265 139 88 82 73 58 57 44 37 34 33 29 22 15 14 6 4</canonical_bands>
                <polymorphic_bands>265 139 115 88 82 73 44 37 34 33 29 22 15 14 6 4</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGGAAAAGTACTAAACCTGTA</pcr_primer_p1>
		<pcr_primer_p2>GGACAGGAGATTTTTCGTAGT</pcr_primer_p2>
		<pcr_amplicon_size>660</pcr_amplicon_size>
		<canonical_amplicon>GCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCC</canonical_amplicon>
		<polymorphic_amplicon>GYTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26977</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>76247</contig_pos>
        <strand></strand>
        <context>TGTACACCGT[T/C]ACGGTAGAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGT</left_flank>
        <right_flank>ACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAA</canonical>
            <polymorphic>AAAAATGTGTCAACCAATAAAATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTYACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGGAAAAGTACTAAACCTGTA</pcr_primer_p1>
		<pcr_primer_p2>GGACAGGAGATTTTTCGTAGT</pcr_primer_p2>
		<pcr_amplicon_size>660</pcr_amplicon_size>
		<canonical_amplicon>TTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCC</canonical_amplicon>
		<polymorphic_amplicon>TYACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26978</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>76267</contig_pos>
        <strand></strand>
        <context>TGCATACTCT[A/G]GCYMCAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCT</left_flank>
        <right_flank>GCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAA</canonical>
            <polymorphic>AATTTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTRGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>388 346 83 58 57 33 21 7 7</canonical_bands>
                <polymorphic_bands>445 346 83 58 33 21 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>498 449 53</canonical_bands>
                <polymorphic_bands>551 449</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>265 139 88 82 73 58 57 49 37 34 33 29 21 15 7 7 6</canonical_bands>
                <polymorphic_bands>265 196 88 82 73 58 49 37 34 33 29 21 15 7 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTACGCAGAGTGACATTAAGC</pcr_primer_p1>
		<pcr_primer_p2>TTTCCGATTGTACTGTGTCATA</pcr_primer_p2>
		<pcr_amplicon_size>676</pcr_amplicon_size>
		<canonical_amplicon>GTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTRGCTACAAAAAAACTACGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26979</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>76270</contig_pos>
        <strand></strand>
        <context>ATACTCTRGC[T/C]MCAAAAAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGC</left_flank>
        <right_flank>ACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTG</canonical>
            <polymorphic>TTAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCYACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>388 346 83 58 57 33 21 10 4</canonical_bands>
                <polymorphic_bands>445 346 83 58 33 21 10 4</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>265 139 88 82 73 58 57 49 37 34 33 29 21 15 10 6 4</canonical_bands>
                <polymorphic_bands>265 196 88 82 73 58 49 37 34 33 29 21 15 10 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAGTGACATTAAGCGTTGTA</pcr_primer_p1>
		<pcr_primer_p2>TTTCCGATTGTACTGTGTCATA</pcr_primer_p2>
		<pcr_amplicon_size>671</pcr_amplicon_size>
		<canonical_amplicon>CAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATC</canonical_amplicon>
		<polymorphic_amplicon>CAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCYACAAAAAAACTACGAAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26980</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>76271</contig_pos>
        <strand></strand>
        <context>TACTCTRGCY[A/C]CAAAAAAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCT</left_flank>
        <right_flank>CAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGA</canonical>
            <polymorphic>TAGCTAATATTATGATGAATAATTTATTAGTTTCAGCTTTTCCATATCTTTTACGGTAACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTMCAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAGTGACATTAAGCGTTGTA</pcr_primer_p1>
		<pcr_primer_p2>TTTCCGATTGTACTGTGTCATA</pcr_primer_p2>
		<pcr_amplicon_size>671</pcr_amplicon_size>
		<canonical_amplicon>CAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCT</canonical_amplicon>
		<polymorphic_amplicon>CAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTMCAAAAAAACTACGAAAAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26981</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>76329</contig_pos>
        <strand></strand>
        <context>tagttgatag[T/C]gtamatgrtt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAG</left_flank>
        <right_flank>GTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGAGTTTTCAGATGTTCTACAGGTCCTATGTAACTTGTTAACAAGCGTATCTTAAAGGAGG</canonical>
            <polymorphic>ACCGAGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGYGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGAGTTTTCAGATGTTCTACAGGTCCTATGTAACTTGTTAACAAGCGTATCTTAAAGGAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGTACA</site>
                <isoschizomers>
                    <enzyme>AauI</enzyme>
                    <enzyme>Bsp1407I</enzyme>
                    <enzyme>BsrGI</enzyme>
                    <enzyme>SspBI</enzyme>
                </isoschizomers>
                <canonical_bands>500 408 92</canonical_bands>
                <polymorphic_bands>592 408</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>138 121 112 108 80 72 67 67 62 52 25 22 18 17 13 13 11 2</canonical_bands>
                <polymorphic_bands>138 134 112 108 80 72 67 67 62 52 25 22 18 17 13 11 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>477 411 75 22 15</canonical_bands>
                <polymorphic_bands>492 411 75 22</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 285 123 92</canonical_bands>
                <polymorphic_bands>592 285 123</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACTACGAAAAATCTCCTGTC</pcr_primer_p1>
		<pcr_primer_p2>TTTCCGATTGTACTGTGTCATA</pcr_primer_p2>
		<pcr_amplicon_size>614</pcr_amplicon_size>
		<canonical_amplicon>AAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACA</canonical_amplicon>
		<polymorphic_amplicon>AAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGYGTACATGATTAATAGGTTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26982</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>76333</contig_pos>
        <strand></strand>
        <context>tgatagygta[C/A]atgrttaata</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTA</left_flank>
        <right_flank>ATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGAGTTTTCAGATGTTCTACAGGTCCTATGTAACTTGTTAACAAGCGTATCTTAAAGGAGGCCAG</canonical>
            <polymorphic>AGATAATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTAMATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGAGTTTTCAGATGTTCTACAGGTCCTATGTAACTTGTTAACAAGCGTATCTTAAAGGAGGCCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGTACA</site>
                <isoschizomers>
                    <enzyme>AauI</enzyme>
                    <enzyme>Bsp1407I</enzyme>
                    <enzyme>BsrGI</enzyme>
                    <enzyme>SspBI</enzyme>
                </isoschizomers>
                <canonical_bands>504 404 92</canonical_bands>
                <polymorphic_bands>596 404</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 261 121 75 24 17</canonical_bands>
                <polymorphic_bands>519 261 121 75 24</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>280 220 133 123 109 78 46 11</canonical_bands>
                <polymorphic_bands>326 220 133 123 109 78 11</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>477 407 75 26 15</canonical_bands>
                <polymorphic_bands>492 407 75 26</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>504 285 119 92</canonical_bands>
                <polymorphic_bands>596 285 119</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACTACGAAAAATCTCCTGTC</pcr_primer_p1>
		<pcr_primer_p2>TTTCCGATTGTACTGTGTCATA</pcr_primer_p2>
		<pcr_amplicon_size>614</pcr_amplicon_size>
		<canonical_amplicon>AAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGG</canonical_amplicon>
		<polymorphic_amplicon>AAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTAMATGATTAATAGGTTACATAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26983</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>76337</contig_pos>
        <strand></strand>
        <context>agygtamatg[A/G]ttaataggtt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATG</left_flank>
        <right_flank>TTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGAGTTTTCAGATGTTCTACAGGTCCTATGTAACTTGTTAACAAGCGTATCTTAAAGGAGGCCAGACAT</canonical>
            <polymorphic>AATTTGGCTTAAAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGRTTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGAGTTTTCAGATGTTCTACAGGTCCTATGTAACTTGTTAACAAGCGTATCTTAAAGGAGGCCAGACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACTACGAAAAATCTCCTGTC</pcr_primer_p1>
		<pcr_primer_p2>TTTCCGATTGTACTGTGTCATA</pcr_primer_p2>
		<pcr_amplicon_size>614</pcr_amplicon_size>
		<canonical_amplicon>AAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCT</canonical_amplicon>
		<polymorphic_amplicon>AAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGRTTAATAGGTTACATAGGACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26984</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>76348</contig_pos>
        <strand></strand>
        <context>ttaataggtt[A/G]cataggacct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTT</left_flank>
        <right_flank>CATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGAGTTTTCAGATGTTCTACAGGTCCTATGTAACTTGTTAACAAGCGTATCTTAAAGGAGGCCAGACATGAAAATTTTCA</canonical>
            <polymorphic>AAATTAAGGGTCCTTCCATTACAGGCTCAGAATGGTCTTTAAATATCTTTTAAAAACCTGAAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTRCATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGAGTTTTCAGATGTTCTACAGGTCCTATGTAACTTGTTAACAAGCGTATCTTAAAGGAGGCCAGACATGAAAATTTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>399 374 100 54 51 22</canonical_bands>
                <polymorphic_bands>499 374 54 51 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACTACGAAAAATCTCCTGTC</pcr_primer_p1>
		<pcr_primer_p2>TTTCCGATTGTACTGTGTCATA</pcr_primer_p2>
		<pcr_amplicon_size>614</pcr_amplicon_size>
		<canonical_amplicon>AAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGT</canonical_amplicon>
		<polymorphic_amplicon>AAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTRCATAGGACCTTTCCCAGATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26985</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>76408</contig_pos>
        <strand></strand>
        <context>aggttagagg[C/T]tgcaacgagc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGG</left_flank>
        <right_flank>TGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGAGTTTTCAGATGTTCTACAGGTCCTATGTAACTTGTTAACAAGCGTATCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGACACAGTACAATCGGAAAATAACAATGGACAGCAAAC</canonical>
            <polymorphic>AAAATCCCGGCAAAAAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGYTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGAGTTTTCAGATGTTCTACAGGTCCTATGTAACTTGTTAACAAGCGTATCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGACACAGTACAATCGGAAAATAACAATGGACAGCAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>498 269 233</canonical_bands>
                <polymorphic_bands>767 233</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>230 139 88 82 79 73 69 58 57 49 34 21 15 6</canonical_bands>
                <polymorphic_bands>230 212 88 82 79 69 58 57 49 34 21 15 6</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACTACGAAAAATCTCCTGTC</pcr_primer_p1>
		<pcr_primer_p2>TTTCCGATTGTACTGTGTCATA</pcr_primer_p2>
		<pcr_amplicon_size>614</pcr_amplicon_size>
		<canonical_amplicon>AAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGAGTTTTCAGATGTTCTACAGGTCCTATGTAACTTGTTAACAAGCGTATCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGACACAGTACAATCGGAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGYTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGAGTTTTCAGATGTTCTACAGGTCCTATGTAACTTGTTAACAAGCGTATCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGACACAGTACAATCGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26986</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>76422</contig_pos>
        <strand></strand>
        <context>aacgagcaga[C/G]ttatcaaact</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGA</left_flank>
        <right_flank>TTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGAGTTTTCAGATGTTCTACAGGTCCTATGTAACTTGTTAACAAGCGTATCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGACACAGTACAATCGGAAAATAACAATGGACAGCAAACCATCCCTCCCTGTT</canonical>
            <polymorphic>AAAAAACCTGAAATCGGCACCTTCATTCAAGTACTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGASTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGAGTTTTCAGATGTTCTACAGGTCCTATGTAACTTGTTAACAAGCGTATCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGACACAGTACAATCGGAAAATAACAATGGACAGCAAACCATCCCTCCCTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTACGAAAAATCTCCTGTC</pcr_primer_p1>
		<pcr_primer_p2>TTTCCGATTGTACTGTGTCATA</pcr_primer_p2>
		<pcr_amplicon_size>614</pcr_amplicon_size>
		<canonical_amplicon>AAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGAGTTTTCAGATGTTCTACAGGTCCTATGTAACTTGTTAACAAGCGTATCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGACACAGTACAATCGGAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGASTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGAGTTTTCAGATGTTCTACAGGTCCTATGTAACTTGTTAACAAGCGTATCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGACACAGTACAATCGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26987</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>76455</contig_pos>
        <strand></strand>
        <context>ttgggtgtcc[A/C]acatgaarga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCC</left_flank>
        <right_flank>ACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGAGTTTTCAGATGTTCTACAGGTCCTATGTAACTTGTTAACAAGCGTATCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGACACAGTACAATCGGAAAATAACAATGGACAGCAAACCATCCCTCCCTGTTACTGTTCAAGCGAGAACGCGACCGTTCTTCCAA</canonical>
            <polymorphic>CTATCCAGAGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCMACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGAGTTTTCAGATGTTCTACAGGTCCTATGTAACTTGTTAACAAGCGTATCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGACACAGTACAATCGGAAAATAACAATGGACAGCAAACCATCCCTCCCTGTTACTGTTCAAGCGAGAACGCGACCGTTCTTCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTACGAAAAATCTCCTGTC</pcr_primer_p1>
		<pcr_primer_p2>TTTCCGATTGTACTGTGTCATA</pcr_primer_p2>
		<pcr_amplicon_size>614</pcr_amplicon_size>
		<canonical_amplicon>AAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGAGTTTTCAGATGTTCTACAGGTCCTATGTAACTTGTTAACAAGCGTATCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGACACAGTACAATCGGAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCMACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGAGTTTTCAGATGTTCTACAGGTCCTATGTAACTTGTTAACAAGCGTATCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGACACAGTACAATCGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26988</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>76463</contig_pos>
        <strand></strand>
        <context>ccmacatgaa[G/A]gaaacatgat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAA</left_flank>
        <right_flank>GAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGAGTTTTCAGATGTTCTACAGGTCCTATGTAACTTGTTAACAAGCGTATCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGACACAGTACAATCGGAAAATAACAATGGACAGCAAACCATCCCTCCCTGTTACTGTTCAAGCGAGAACGCGACCGTTCTTCCAAGCGGCGCC</canonical>
            <polymorphic>AGATCTAACCTTGACATTACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAARGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGAGTTTTCAGATGTTCTACAGGTCCTATGTAACTTGTTAACAAGCGTATCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGACACAGTACAATCGGAAAATAACAATGGACAGCAAACCATCCCTCCCTGTTACTGTTCAAGCGAGAACGCGACCGTTCTTCCAAGCGGCGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTACGAAAAATCTCCTGTC</pcr_primer_p1>
		<pcr_primer_p2>TTTCCGATTGTACTGTGTCATA</pcr_primer_p2>
		<pcr_amplicon_size>614</pcr_amplicon_size>
		<canonical_amplicon>AAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGAGTTTTCAGATGTTCTACAGGTCCTATGTAACTTGTTAACAAGCGTATCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGACACAGTACAATCGGAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAARGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGAGTTTTCAGATGTTCTACAGGTCCTATGTAACTTGTTAACAAGCGTATCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGACACAGTACAATCGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26989</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>76480</contig_pos>
        <strand></strand>
        <context>tgatggttca[G/A]cctaagccta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCA</left_flank>
        <right_flank>CCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGAGTTTTCAGATGTTCTACAGGTCCTATGTAACTTGTTAACAAGCGTATCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGACACAGTACAATCGGAAAATAACAATGGACAGCAAACCATCCCTCCCTGTTACTGTTCAAGCGAGAACGCGACCGTTCTTCCAAGCGGCGCCGACTCCTCGTTTCATAA</canonical>
            <polymorphic>TACATTTTTTTTTGCTCAGTATCCAAAATGACACCCGAAATGTGGTATATTGAGTCCTTAAAGGTGGGGGGACATGAAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCARCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGAGTTTTCAGATGTTCTACAGGTCCTATGTAACTTGTTAACAAGCGTATCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGACACAGTACAATCGGAAAATAACAATGGACAGCAAACCATCCCTCCCTGTTACTGTTCAAGCGAGAACGCGACCGTTCTTCCAAGCGGCGCCGACTCCTCGTTTCATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>158 151 139 88 82 73 69 58 57 49 34 21 15 6</canonical_bands>
                <polymorphic_bands>158 151 139 88 82 79 69 58 57 49 34 21 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACTACGAAAAATCTCCTGTC</pcr_primer_p1>
		<pcr_primer_p2>TTTCCGATTGTACTGTGTCATA</pcr_primer_p2>
		<pcr_amplicon_size>614</pcr_amplicon_size>
		<canonical_amplicon>AAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGAGTTTTCAGATGTTCTACAGGTCCTATGTAACTTGTTAACAAGCGTATCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGACACAGTACAATCGGAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCARCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGAGTTTTCAGATGTTCTACAGGTCCTATGTAACTTGTTAACAAGCGTATCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGACACAGTACAATCGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26990</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>76556</contig_pos>
        <strand></strand>
        <context>tccggaataa[G/T]aatagtcttg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAA</left_flank>
        <right_flank>AATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGAGTTTTCAGATGTTCTACAGGTCCTATGTAACTTGTTAACAAGCGTATCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGACACAGTACAATCGGAAAATAACAATGGACAGCAAACCATCCCTCCCTGTTACTGTTCAAGCGAGAACGCGACCGTTCTTCCAAGCGGCGCCGACTCCTCGTTTCATAATCGTTTTAGCGGCAGTAGACGACAAGCGCCGTGTGGTGTAGAGGTGAACGCGCTTGTATATCAGTCGCGCGTCGCG</canonical>
            <polymorphic>AAAAAAATTATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGCGAGGATTGAGGGTGCGGAGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAKAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGAGTTTTCAGATGTTCTACAGGTCCTATGTAACTTGTTAACAAGCGTATCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGACACAGTACAATCGGAAAATAACAATGGACAGCAAACCATCCCTCCCTGTTACTGTTCAAGCGAGAACGCGACCGTTCTTCCAAGCGGCGCCGACTCCTCGTTTCATAATCGTTTTAGCGGCAGTAGACGACAAGCGCCGTGTGGTGTAGAGGTGAACGCGCTTGTATATCAGTCGCGCGTCGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTACGAAAAATCTCCTGTC</pcr_primer_p1>
		<pcr_primer_p2>TTTCCGATTGTACTGTGTCATA</pcr_primer_p2>
		<pcr_amplicon_size>614</pcr_amplicon_size>
		<canonical_amplicon>AAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAGAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGAGTTTTCAGATGTTCTACAGGTCCTATGTAACTTGTTAACAAGCGTATCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGACACAGTACAATCGGAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGTACACTAGTTGATAGTGTACATGATTAATAGGTTACATAGGACCTTTCCCAGATGTTCTGAGGATCATGGGACATATGAGAGTTAGGTTAGAGGCTGCAACGAGCAGACTTATCAAACTTCCCGTCGTTTTTTGGGTGTCCAACATGAAGGAAACATGATGGTTCAGCCTAAGCCTATAATTGAAGAAATCTTTTCTAATTCAAAATTAGTCTTCTTGGAACAAAATATTGGTCCGGAATAAKAATAGTCTTGGGCCAAATTGAGTAGAAATCGTGGCATGAAATTTCTTGCCTCGGATTTTTCATTTTTCAAAAATTCGATGATATTTTTGGGTTGAGGAAGCTTTTTTCAACCACTTCTTTCAGGTTCTTTCAGGCTGAAACGCCATGCTTCTTTTATCTGGAACACCCTAAAATGTCAGCAAGCTCAGTAACTGCTTGATGTAGCTTTAAACTGAGTTTTCAGATGTTCTACAGGTCCTATGTAACTTGTTAACAAGCGTATCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGACACAGTACAATCGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26991</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>100784</contig_pos>
        <strand>+</strand>
        <context>CTCTCTCAAA[C/T]TGTCTAAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTTCGAGCTTCAGATGAAATACAATTTGCTATCTTAGCCTCTCTCAAA</left_flank>
        <right_flank>TGTCTAAAACTATCTTAGCCCATCCATACTCACATTCCATTGCCTGTAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCGAGTTATAACCCTTTTTGCATTTAAGAGAGACGCAGAGAAACGAGAGCACTCTCGTTTCTCTGCGTCTCTCCTCAACGCAAAAATGGCTGTAATTCGGGTTAGAATAGACCTAGAAAAATGATTTTTGTTGCAATTTATTCGCTAGGAATGTGGTTTTTAGATCGGTTTTTTTAAAATTTTGGATTCTCAAAAAATATTAAAAATTTTTTGTAAAAAAATAAAAAATAAATGTTTTATCTGAAAACCCTTTTTCTGCTTTCCCAAATGCGCTAAAAATCGAGTTTCTAGCGCAAGTTTGAAGCTAGTTATGACCATTTTTGCATTTAAGAGAGACGCAGAGAAACGAGAGCACTTTCGCTGCTCTGCGTCTCTCAATTGCAAAAAAGACTATAACTCGCTTCAGAATCAAGCTAGAAACTTGATTTTTAGCGCACTTTGATGGTCAGATTTCGAGCTTCAGATGAAATACAATTTGCTATCTTAGCCTCTCTCAAATTGTCTAAAACTATCTTAGCCCATCCATACTCACATTCCATTGCCTGTAATCCTCCTTTCCACTATCCGGCAACATCAAAACCCTCCATGGCAGCACGAATTGCTCCTTCTTGGCCTCTGGATTCTCCTCAATGAACTTCTTGATAGGCTGCACGACTCCGCACCATTTTTTATAATCCTCCAATGACAGATTTCTGGGTACACTTTCATTTTTGGCTCCTGTGGTATAGGCAGCCAAATTTTTCATCCGTTCGTAGAATTGCAAGTCATCCGGATGGAAATTTACAATCTTTTCCATTCCAAAATGACAACGAATCAGTGCAAAAATACCTTCCTCGGTGATCCCGATCTTTCGTGCGATTTGGATTTTTTGGAGGTTCTGAAATTCGAATTTTTTGAGAACATCTTAAAATACCAATTCTAGCCATCAAAATGCAACAAAAACCATCTTTCTATGCCTATCTCAACGCGAGTTATAGCCATTTTTGCATTGGAGTGGGA</canonical>
            <polymorphic>AGCGAGTTATAACCCTTTTTGCATTTAAGAGAGACGCAGAGAAACGAGAGCACTCTCGTTTCTCTGCGTCTCTCCTCAACGCAAAAATGGCTGTAATTCGGGTTAGAATAGACCTAGAAAAATGATTTTTGTTGCAATTTATTCGCTAGGAATGTGGTTTTTAGATCGGTTTTTTTAAAATTTTGGATTCTCAAAAAATATTAAAAATTTTTTGTAAAAAAATAAAAAATAAATGTTTTATCTGAAAACCCTTTTTCTGCTTTCCCAAATGCGCTAAAAATCGAGTTTCTAGCGCAAGTTTGAAGCTAGTTATGACCATTTTTGCATTTAAGAGAGACGCAGAGAAACGAGAGCACTTTCGCTGCTCTGCGTCTCTCAATTGCAAAAAAGACTATAACTCGCTTCAGAATCAAGCTAGAAACTTGATTTTTAGCGCACTTTGATGGTCAGATTTCGAGCTTCAGATGAAATACAATTTGCTATCTTAGCCTCTCTCAAAYTGTCTAAAACTATCTTAGCCCATCCATACTCACATTCCATTGCCTGTAATCCTCCTTTCCACTATCCGGCAACATCAAAACCCTCCATGGCAGCACGAATTGCTCCTTCTTGGCCTCTGGATTCTCCTCAATGAACTTCTTGATAGGCTGCACGACTCCGCACCATTTTTTATAATCCTCCAATGACAGATTTCTGGGTACACTTTCATTTTTGGCTCCTGTGGTATAGGCAGCCAAATTTTTCATCCGTTCGTAGAATTGCAAGTCATCCGGATGGAAATTTACAATCTTTTCCATTCCAAAATGACAACGAATCAGTGCAAAAATACCTTCCTCGGTGATCCCGATCTTTCGTGCGATTTGGATTTTTTGGAGGTTCTGAAATTCGAATTTTTTGAGAACATCTTAAAATACCAATTCTAGCCATCAAAATGCAACAAAAACCATCTTTCTATGCCTATCTCAACGCGAGTTATAGCCATTTTTGCATTGGAGTGGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>172 139 104 100 96 94 85 43 41 27 27 24 22 20 6</canonical_bands>
                <polymorphic_bands>172 139 124 104 96 94 85 43 41 27 27 22 20 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGTTTGAATATTTGAAATTGGTAA</pcr_primer_p1>
		<pcr_primer_p2>GATAGTGGAAAGGAGGATTACAG</pcr_primer_p2>
		<pcr_amplicon_size>666</pcr_amplicon_size>
		<canonical_amplicon>ATTGTCTAAAACTATCTTAGCCCATCCATACTCACATTCCATTGCCTGTAATCCTCCTTTCCACTATC</canonical_amplicon>
		<polymorphic_amplicon>AYTGTCTAAAACTATCTTAGCCCATCCATACTCACATTCCATTGCCTGTAATCCTCCTTTCCACTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26992</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>100929</contig_pos>
        <strand>+</strand>
        <context>ACTTCTTGAT[A/T]GGCTGCACGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACGAATTGCTCCTTCTTGGCCTCTGGATTCTCCTCAATGAACTTCTTGAT</left_flank>
        <right_flank>GGCTGCACGACTCCGCACCATTTTTTATAATCCTCCAATGACAGATTTCT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGGAATGTGGTTTTTAGATCGGTTTTTTTAAAATTTTGGATTCTCAAAAAATATTAAAAATTTTTTGTAAAAAAATAAAAAATAAATGTTTTATCTGAAAACCCTTTTTCTGCTTTCCCAAATGCGCTAAAAATCGAGTTTCTAGCGCAAGTTTGAAGCTAGTTATGACCATTTTTGCATTTAAGAGAGACGCAGAGAAACGAGAGCACTTTCGCTGCTCTGCGTCTCTCAATTGCAAAAAAGACTATAACTCGCTTCAGAATCAAGCTAGAAACTTGATTTTTAGCGCACTTTGATGGTCAGATTTCGAGCTTCAGATGAAATACAATTTGCTATCTTAGCCTCTCTCAAATTGTCTAAAACTATCTTAGCCCATCCATACTCACATTCCATTGCCTGTAATCCTCCTTTCCACTATCCGGCAACATCAAAACCCTCCATGGCAGCACGAATTGCTCCTTCTTGGCCTCTGGATTCTCCTCAATGAACTTCTTGATAGGCTGCACGACTCCGCACCATTTTTTATAATCCTCCAATGACAGATTTCTGGGTACACTTTCATTTTTGGCTCCTGTGGTATAGGCAGCCAAATTTTTCATCCGTTCGTAGAATTGCAAGTCATCCGGATGGAAATTTACAATCTTTTCCATTCCAAAATGACAACGAATCAGTGCAAAAATACCTTCCTCGGTGATCCCGATCTTTCGTGCGATTTGGATTTTTTGGAGGTTCTGAAATTCGAATTTTTTGAGAACATCTTAAAATACCAATTCTAGCCATCAAAATGCAACAAAAACCATCTTTCTATGCCTATCTCAACGCGAGTTATAGCCATTTTTGCATTGGAGTGGGAGAAAAGTGGGCGGGGCTCAGCACACCTGGCATAATCCTTCCCGTGGGAAACTCCGCCCCCTTTTCAAACGTCGTAGGTACTGTTTGCGTCATCAGATAAGTAATTAGGGAGCAATAAACCGACATTGTGAGCGATGGTTTGACAT</canonical>
            <polymorphic>CTAGGAATGTGGTTTTTAGATCGGTTTTTTTAAAATTTTGGATTCTCAAAAAATATTAAAAATTTTTTGTAAAAAAATAAAAAATAAATGTTTTATCTGAAAACCCTTTTTCTGCTTTCCCAAATGCGCTAAAAATCGAGTTTCTAGCGCAAGTTTGAAGCTAGTTATGACCATTTTTGCATTTAAGAGAGACGCAGAGAAACGAGAGCACTTTCGCTGCTCTGCGTCTCTCAATTGCAAAAAAGACTATAACTCGCTTCAGAATCAAGCTAGAAACTTGATTTTTAGCGCACTTTGATGGTCAGATTTCGAGCTTCAGATGAAATACAATTTGCTATCTTAGCCTCTCTCAAATTGTCTAAAACTATCTTAGCCCATCCATACTCACATTCCATTGCCTGTAATCCTCCTTTCCACTATCCGGCAACATCAAAACCCTCCATGGCAGCACGAATTGCTCCTTCTTGGCCTCTGGATTCTCCTCAATGAACTTCTTGATWGGCTGCACGACTCCGCACCATTTTTTATAATCCTCCAATGACAGATTTCTGGGTACACTTTCATTTTTGGCTCCTGTGGTATAGGCAGCCAAATTTTTCATCCGTTCGTAGAATTGCAAGTCATCCGGATGGAAATTTACAATCTTTTCCATTCCAAAATGACAACGAATCAGTGCAAAAATACCTTCCTCGGTGATCCCGATCTTTCGTGCGATTTGGATTTTTTGGAGGTTCTGAAATTCGAATTTTTTGAGAACATCTTAAAATACCAATTCTAGCCATCAAAATGCAACAAAAACCATCTTTCTATGCCTATCTCAACGCGAGTTATAGCCATTTTTGCATTGGAGTGGGAGAAAAGTGGGCGGGGCTCAGCACACCTGGCATAATCCTTCCCGTGGGAAACTCCGCCCCCTTTTCAAACGTCGTAGGTACTGTTTGCGTCATCAGATAAGTAATTAGGGAGCAATAAACCGACATTGTGAGCGATGGTTTGACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTATCTTAGCCCATCCATACT</pcr_primer_p1>
		<pcr_primer_p2>TCTACGAACGGATGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACTATCTTAGCCCATCCATACTCACATTCCATTGCCTGTAATCCTCCTTTCCACTATCCGGCAACATCAAAACCCTCCATGGCAGCACGAATTGCTCCTTCTTGGCCTCTGGATTCTCCTCAATGAACTTCTTGATAGGCTGCACGACTCCGCACCATTTTTTATAATCCTCCAATGACAGATTTCTGGGTACACTTTCATTTTTGGCTCCTGTGGTATAGGCAGCCAAATTTTTCATCCGTTCGTAGA</canonical_amplicon>
		<polymorphic_amplicon>AACTATCTTAGCCCATCCATACTCACATTCCATTGCCTGTAATCCTCCTTTCCACTATCCGGCAACATCAAAACCCTCCATGGCAGCACGAATTGCTCCTTCTTGGCCTCTGGATTCTCCTCAATGAACTTCTTGATWGGCTGCACGACTCCGCACCATTTTTTATAATCCTCCAATGACAGATTTCTGGGTACACTTTCATTTTTGGCTCCTGTGGTATAGGCAGCCAAATTTTTCATCCGTTCGTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26993</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>100950</contig_pos>
        <strand>+</strand>
        <context>CTCCGCACCA[C/T]TTTTTATAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTGGATTCTCCTCAATGAACTTCTTGATAGGCTGCACGACTCCGCACCA</left_flank>
        <right_flank>TTTTTATAATCCTCCAATGACAGATTTCTGGGTACACTTTCATTTTTGGC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGTTTTTTTAAAATTTTGGATTCTCAAAAAATATTAAAAATTTTTTGTAAAAAAATAAAAAATAAATGTTTTATCTGAAAACCCTTTTTCTGCTTTCCCAAATGCGCTAAAAATCGAGTTTCTAGCGCAAGTTTGAAGCTAGTTATGACCATTTTTGCATTTAAGAGAGACGCAGAGAAACGAGAGCACTTTCGCTGCTCTGCGTCTCTCAATTGCAAAAAAGACTATAACTCGCTTCAGAATCAAGCTAGAAACTTGATTTTTAGCGCACTTTGATGGTCAGATTTCGAGCTTCAGATGAAATACAATTTGCTATCTTAGCCTCTCTCAAATTGTCTAAAACTATCTTAGCCCATCCATACTCACATTCCATTGCCTGTAATCCTCCTTTCCACTATCCGGCAACATCAAAACCCTCCATGGCAGCACGAATTGCTCCTTCTTGGCCTCTGGATTCTCCTCAATGAACTTCTTGATAGGCTGCACGACTCCGCACCATTTTTTATAATCCTCCAATGACAGATTTCTGGGTACACTTTCATTTTTGGCTCCTGTGGTATAGGCAGCCAAATTTTTCATCCGTTCGTAGAATTGCAAGTCATCCGGATGGAAATTTACAATCTTTTCCATTCCAAAATGACAACGAATCAGTGCAAAAATACCTTCCTCGGTGATCCCGATCTTTCGTGCGATTTGGATTTTTTGGAGGTTCTGAAATTCGAATTTTTTGAGAACATCTTAAAATACCAATTCTAGCCATCAAAATGCAACAAAAACCATCTTTCTATGCCTATCTCAACGCGAGTTATAGCCATTTTTGCATTGGAGTGGGAGAAAAGTGGGCGGGGCTCAGCACACCTGGCATAATCCTTCCCGTGGGAAACTCCGCCCCCTTTTCAAACGTCGTAGGTACTGTTTGCGTCATCAGATAAGTAATTAGGGAGCAATAAACCGACATTGTGAGCGATGGTTTGACATGCATGTGACAGGGTGAAGAGA</canonical>
            <polymorphic>CGGTTTTTTTAAAATTTTGGATTCTCAAAAAATATTAAAAATTTTTTGTAAAAAAATAAAAAATAAATGTTTTATCTGAAAACCCTTTTTCTGCTTTCCCAAATGCGCTAAAAATCGAGTTTCTAGCGCAAGTTTGAAGCTAGTTATGACCATTTTTGCATTTAAGAGAGACGCAGAGAAACGAGAGCACTTTCGCTGCTCTGCGTCTCTCAATTGCAAAAAAGACTATAACTCGCTTCAGAATCAAGCTAGAAACTTGATTTTTAGCGCACTTTGATGGTCAGATTTCGAGCTTCAGATGAAATACAATTTGCTATCTTAGCCTCTCTCAAATTGTCTAAAACTATCTTAGCCCATCCATACTCACATTCCATTGCCTGTAATCCTCCTTTCCACTATCCGGCAACATCAAAACCCTCCATGGCAGCACGAATTGCTCCTTCTTGGCCTCTGGATTCTCCTCAATGAACTTCTTGATAGGCTGCACGACTCCGCACCAYTTTTTATAATCCTCCAATGACAGATTTCTGGGTACACTTTCATTTTTGGCTCCTGTGGTATAGGCAGCCAAATTTTTCATCCGTTCGTAGAATTGCAAGTCATCCGGATGGAAATTTACAATCTTTTCCATTCCAAAATGACAACGAATCAGTGCAAAAATACCTTCCTCGGTGATCCCGATCTTTCGTGCGATTTGGATTTTTTGGAGGTTCTGAAATTCGAATTTTTTGAGAACATCTTAAAATACCAATTCTAGCCATCAAAATGCAACAAAAACCATCTTTCTATGCCTATCTCAACGCGAGTTATAGCCATTTTTGCATTGGAGTGGGAGAAAAGTGGGCGGGGCTCAGCACACCTGGCATAATCCTTCCCGTGGGAAACTCCGCCCCCTTTTCAAACGTCGTAGGTACTGTTTGCGTCATCAGATAAGTAATTAGGGAGCAATAAACCGACATTGTGAGCGATGGTTTGACATGCATGTGACAGGGTGAAGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTATCTTAGCCCATCCATACT</pcr_primer_p1>
		<pcr_primer_p2>TCTACGAACGGATGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACTATCTTAGCCCATCCATACTCACATTCCATTGCCTGTAATCCTCCTTTCCACTATCCGGCAACATCAAAACCCTCCATGGCAGCACGAATTGCTCCTTCTTGGCCTCTGGATTCTCCTCAATGAACTTCTTGATAGGCTGCACGACTCCGCACCATTTTTTATAATCCTCCAATGACAGATTTCTGGGTACACTTTCATTTTTGGCTCCTGTGGTATAGGCAGCCAAATTTTTCATCCGTTCGTAGA</canonical_amplicon>
		<polymorphic_amplicon>AACTATCTTAGCCCATCCATACTCACATTCCATTGCCTGTAATCCTCCTTTCCACTATCCGGCAACATCAAAACCCTCCATGGCAGCACGAATTGCTCCTTCTTGGCCTCTGGATTCTCCTCAATGAACTTCTTGATAGGCTGCACGACTCCGCACCAYTTTTTATAATCCTCCAATGACAGATTTCTGGGTACACTTTCATTTTTGGCTCCTGTGGTATAGGCAGCCAAATTTTTCATCCGTTCGTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26994</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>100989</contig_pos>
        <strand>+</strand>
        <context>TGGGTACACT[C/T]TCATTTTTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTCCGCACCATTTTTTATAATCCTCCAATGACAGATTTCTGGGTACACT</left_flank>
        <right_flank>TCATTTTTGGCTCCTGTGGTATAGGCAGCCAAATTTTTCATCCGTTCGTA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTTTGTAAAAAAATAAAAAATAAATGTTTTATCTGAAAACCCTTTTTCTGCTTTCCCAAATGCGCTAAAAATCGAGTTTCTAGCGCAAGTTTGAAGCTAGTTATGACCATTTTTGCATTTAAGAGAGACGCAGAGAAACGAGAGCACTTTCGCTGCTCTGCGTCTCTCAATTGCAAAAAAGACTATAACTCGCTTCAGAATCAAGCTAGAAACTTGATTTTTAGCGCACTTTGATGGTCAGATTTCGAGCTTCAGATGAAATACAATTTGCTATCTTAGCCTCTCTCAAATTGTCTAAAACTATCTTAGCCCATCCATACTCACATTCCATTGCCTGTAATCCTCCTTTCCACTATCCGGCAACATCAAAACCCTCCATGGCAGCACGAATTGCTCCTTCTTGGCCTCTGGATTCTCCTCAATGAACTTCTTGATAGGCTGCACGACTCCGCACCATTTTTTATAATCCTCCAATGACAGATTTCTGGGTACACTTTCATTTTTGGCTCCTGTGGTATAGGCAGCCAAATTTTTCATCCGTTCGTAGAATTGCAAGTCATCCGGATGGAAATTTACAATCTTTTCCATTCCAAAATGACAACGAATCAGTGCAAAAATACCTTCCTCGGTGATCCCGATCTTTCGTGCGATTTGGATTTTTTGGAGGTTCTGAAATTCGAATTTTTTGAGAACATCTTAAAATACCAATTCTAGCCATCAAAATGCAACAAAAACCATCTTTCTATGCCTATCTCAACGCGAGTTATAGCCATTTTTGCATTGGAGTGGGAGAAAAGTGGGCGGGGCTCAGCACACCTGGCATAATCCTTCCCGTGGGAAACTCCGCCCCCTTTTCAAACGTCGTAGGTACTGTTTGCGTCATCAGATAAGTAATTAGGGAGCAATAAACCGACATTGTGAGCGATGGTTTGACATGCATGTGACAGGGTGAAGAGAAAAGACAATAGATGACCTGATTCGCCTCTTTTGACCCCT</canonical>
            <polymorphic>AATTTTTTGTAAAAAAATAAAAAATAAATGTTTTATCTGAAAACCCTTTTTCTGCTTTCCCAAATGCGCTAAAAATCGAGTTTCTAGCGCAAGTTTGAAGCTAGTTATGACCATTTTTGCATTTAAGAGAGACGCAGAGAAACGAGAGCACTTTCGCTGCTCTGCGTCTCTCAATTGCAAAAAAGACTATAACTCGCTTCAGAATCAAGCTAGAAACTTGATTTTTAGCGCACTTTGATGGTCAGATTTCGAGCTTCAGATGAAATACAATTTGCTATCTTAGCCTCTCTCAAATTGTCTAAAACTATCTTAGCCCATCCATACTCACATTCCATTGCCTGTAATCCTCCTTTCCACTATCCGGCAACATCAAAACCCTCCATGGCAGCACGAATTGCTCCTTCTTGGCCTCTGGATTCTCCTCAATGAACTTCTTGATAGGCTGCACGACTCCGCACCATTTTTTATAATCCTCCAATGACAGATTTCTGGGTACACTYTCATTTTTGGCTCCTGTGGTATAGGCAGCCAAATTTTTCATCCGTTCGTAGAATTGCAAGTCATCCGGATGGAAATTTACAATCTTTTCCATTCCAAAATGACAACGAATCAGTGCAAAAATACCTTCCTCGGTGATCCCGATCTTTCGTGCGATTTGGATTTTTTGGAGGTTCTGAAATTCGAATTTTTTGAGAACATCTTAAAATACCAATTCTAGCCATCAAAATGCAACAAAAACCATCTTTCTATGCCTATCTCAACGCGAGTTATAGCCATTTTTGCATTGGAGTGGGAGAAAAGTGGGCGGGGCTCAGCACACCTGGCATAATCCTTCCCGTGGGAAACTCCGCCCCCTTTTCAAACGTCGTAGGTACTGTTTGCGTCATCAGATAAGTAATTAGGGAGCAATAAACCGACATTGTGAGCGATGGTTTGACATGCATGTGACAGGGTGAAGAGAAAAGACAATAGATGACCTGATTCGCCTCTTTTGACCCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTATCTTAGCCCATCCATACT</pcr_primer_p1>
		<pcr_primer_p2>TCTACGAACGGATGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACTATCTTAGCCCATCCATACTCACATTCCATTGCCTGTAATCCTCCTTTCCACTATCCGGCAACATCAAAACCCTCCATGGCAGCACGAATTGCTCCTTCTTGGCCTCTGGATTCTCCTCAATGAACTTCTTGATAGGCTGCACGACTCCGCACCATTTTTTATAATCCTCCAATGACAGATTTCTGGGTACACTTTCATTTTTGGCTCCTGTGGTATAGGCAGCCAAATTTTTCATCCGTTCGTAGA</canonical_amplicon>
		<polymorphic_amplicon>AACTATCTTAGCCCATCCATACTCACATTCCATTGCCTGTAATCCTCCTTTCCACTATCCGGCAACATCAAAACCCTCCATGGCAGCACGAATTGCTCCTTCTTGGCCTCTGGATTCTCCTCAATGAACTTCTTGATAGGCTGCACGACTCCGCACCATTTTTTATAATCCTCCAATGACAGATTTCTGGGTACACTYTCATTTTTGGCTCCTGTGGTATAGGCAGCCAAATTTTTCATCCGTTCGTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26995</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>101729</contig_pos>
        <strand></strand>
        <context>tgatttttag[C/T]gcaatttgat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATGGCTATAATTCGCTTCAAGTTTGTGCTAGAAACTTGATTTTTAG</left_flank>
        <right_flank>GCAATTTGATTGTCAGATTTTGAGCTTTCAGATGATTTCTAAACGAACTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTTTCTATGCCTATCTCAACGCGAGTTATAGCCATTTTTGCATTGGAGTGGGAGAAAAGTGGGCGGGGCTCAGCACACCTGGCATAATCCTTCCCGTGGGAAACTCCGCCCCCTTTTCAAACGTCGTAGGTACTGTTTGCGTCATCAGATAAGTAATTAGGGAGCAATAAACCGACATTGTGAGCGATGGTTTGACATGCATGTGACAGGGTGAAGAGAAAAGACAATAGATGACCTGATTCGCCTCTTTTGACCCCTTGTTATCGATGGGGAACAATGAAGGAACACCGCCAAGGATTTTCCGCCAACCACCAATCCCTGAAAAGTGCACAATTTTCTAGACCTTCTAGATCATTTTCAGGTTTTCACGAATAACAGTTCACCGATTTACAAACATTGGAAAAAAAGTTCAATTTTNNNNNNNNNNTCTCTGCGTCTCTTGCTTACAAAAATGGCTATAATTCGCTTCAAGTTTGTGCTAGAAACTTGATTTTTAGCGCAATTTGATTGTCAGATTTTGAGCTTTCAGATGATTTCTAAACGAACTAAAACCCTGGAGGACAAAATAGTGAGCTCAACAGTCGCGAAACTTCACTCACCGACCAATTAACCATGTCCGTTGATCCATTTTCCGGCAGAATCAAGTTATATTCTTCTTTGTTCTTTTTTGCTTTCTTCTGATAAGAACTTCCAGGACGTTTTTGTCCTTGCTTATGATTCTGGACACCTTGGTATTGGCCATATGGTCTCCAGAACTGATTCTGGTTCTCATTATATCCCAAGTTTTGGGGGAAAGGCGGAAGAGGCGGAGGAGGTGGTGGTGGTGGAATATCCGATGGATTCGGCCATAGAAAACCATTTCGATGGAGATTCGGTCTCAGTTGAGGACCATATGGACCAACGTATGATCCATTGGAGCCAAAGCTGACTCCAGGAGGGCCAGAAAACGATCCATTGTGAGGGAAGAAATTTGGTCCATAGTTTGGCCTGTTCTGGGC</canonical>
            <polymorphic>ATCTTTCTATGCCTATCTCAACGCGAGTTATAGCCATTTTTGCATTGGAGTGGGAGAAAAGTGGGCGGGGCTCAGCACACCTGGCATAATCCTTCCCGTGGGAAACTCCGCCCCCTTTTCAAACGTCGTAGGTACTGTTTGCGTCATCAGATAAGTAATTAGGGAGCAATAAACCGACATTGTGAGCGATGGTTTGACATGCATGTGACAGGGTGAAGAGAAAAGACAATAGATGACCTGATTCGCCTCTTTTGACCCCTTGTTATCGATGGGGAACAATGAAGGAACACCGCCAAGGATTTTCCGCCAACCACCAATCCCTGAAAAGTGCACAATTTTCTAGACCTTCTAGATCATTTTCAGGTTTTCACGAATAACAGTTCACCGATTTACAAACATTGGAAAAAAAGTTCAATTTTNNNNNNNNNNTCTCTGCGTCTCTTGCTTACAAAAATGGCTATAATTCGCTTCAAGTTTGTGCTAGAAACTTGATTTTTAGYGCAATTTGATTGTCAGATTTTGAGCTTTCAGATGATTTCTAAACGAACTAAAACCCTGGAGGACAAAATAGTGAGCTCAACAGTCGCGAAACTTCACTCACCGACCAATTAACCATGTCCGTTGATCCATTTTCCGGCAGAATCAAGTTATATTCTTCTTTGTTCTTTTTTGCTTTCTTCTGATAAGAACTTCCAGGACGTTTTTGTCCTTGCTTATGATTCTGGACACCTTGGTATTGGCCATATGGTCTCCAGAACTGATTCTGGTTCTCATTATATCCCAAGTTTTGGGGGAAAGGCGGAAGAGGCGGAGGAGGTGGTGGTGGTGGAATATCCGATGGATTCGGCCATAGAAAACCATTTCGATGGAGATTCGGTCTCAGTTGAGGACCATATGGACCAACGTATGATCCATTGGAGCCAAAGCTGACTCCAGGAGGGCCAGAAAACGATCCATTGTGAGGGAAGAAATTTGGTCCATAGTTTGGCCTGTTCTGGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCTTCTAGATCATTTTCAGGTT</pcr_primer_p1>
		<pcr_primer_p2>GACTGTTGAGCTCACTATTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ACCTTCTAGATCATTTTCAGGTTTTCACGAATAACAGTTCACCGATTTACAAACATTGGAAAAAAAGTTCAATTTTNNNNNNNNNNTCTCTGCGTCTCTTGCTTACAAAAATGGCTATAATTCGCTTCAAGTTTGTGCTAGAAACTTGATTTTTAGCGCAATTTGATTGTCAGATTTTGAGCTTTCAGATGATTTCTAAACGAACTAAAACCCTGGAGGACAAAATAGTGAGCTCAACAGTC</canonical_amplicon>
		<polymorphic_amplicon>ACCTTCTAGATCATTTTCAGGTTTTCACGAATAACAGTTCACCGATTTACAAACATTGGAAAAAAAGTTCAATTTTNNNNNNNNNNTCTCTGCGTCTCTTGCTTACAAAAATGGCTATAATTCGCTTCAAGTTTGTGCTAGAAACTTGATTTTTAGYGCAATTTGATTGTCAGATTTTGAGCTTTCAGATGATTTCTAAACGAACTAAAACCCTGGAGGACAAAATAGTGAGCTCAACAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26996</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>101955</contig_pos>
        <strand>+</strand>
        <context>ATGATTCTGG[A/C]CACCTTGGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTTCTGATAAGAACTTCCAGGACGTTTTTGTCCTTGCTTATGATTCTGG</left_flank>
        <right_flank>CACCTTGGTATTGGCCATATGGTCTCCAGAACTGATTCTGGTTCTCATTA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATAGATGACCTGATTCGCCTCTTTTGACCCCTTGTTATCGATGGGGAACAATGAAGGAACACCGCCAAGGATTTTCCGCCAACCACCAATCCCTGAAAAGTGCACAATTTTCTAGACCTTCTAGATCATTTTCAGGTTTTCACGAATAACAGTTCACCGATTTACAAACATTGGAAAAAAAGTTCAATTTTNNNNNNNNNNTCTCTGCGTCTCTTGCTTACAAAAATGGCTATAATTCGCTTCAAGTTTGTGCTAGAAACTTGATTTTTAGCGCAATTTGATTGTCAGATTTTGAGCTTTCAGATGATTTCTAAACGAACTAAAACCCTGGAGGACAAAATAGTGAGCTCAACAGTCGCGAAACTTCACTCACCGACCAATTAACCATGTCCGTTGATCCATTTTCCGGCAGAATCAAGTTATATTCTTCTTTGTTCTTTTTTGCTTTCTTCTGATAAGAACTTCCAGGACGTTTTTGTCCTTGCTTATGATTCTGGACACCTTGGTATTGGCCATATGGTCTCCAGAACTGATTCTGGTTCTCATTATATCCCAAGTTTTGGGGGAAAGGCGGAAGAGGCGGAGGAGGTGGTGGTGGTGGAATATCCGATGGATTCGGCCATAGAAAACCATTTCGATGGAGATTCGGTCTCAGTTGAGGACCATATGGACCAACGTATGATCCATTGGAGCCAAAGCTGACTCCAGGAGGGCCAGAAAACGATCCATTGTGAGGGAAGAAATTTGGTCCATAGTTTGGCCTGTTCTGGGCAAAGCTTGGTCCACTTTTTGAGCCATTTAAGCCATTTTGATTCTTCTGGAGTGTCGCAGCGTGTCCAGAACTTTCAGTCGAAATTGGTCCATTTGGTGAAAAATTTGGGTCACTTCTTGAGCCATTTAATTCATTCTGAATCGATTCTGAGCCATTTGGGCCAGAATTCAGGCCATTTCGATCCTTAGGATTCTCTCGATTCTTCTCCAAAACTTCCTTTTTGACA</canonical>
            <polymorphic>CAATAGATGACCTGATTCGCCTCTTTTGACCCCTTGTTATCGATGGGGAACAATGAAGGAACACCGCCAAGGATTTTCCGCCAACCACCAATCCCTGAAAAGTGCACAATTTTCTAGACCTTCTAGATCATTTTCAGGTTTTCACGAATAACAGTTCACCGATTTACAAACATTGGAAAAAAAGTTCAATTTTNNNNNNNNNNTCTCTGCGTCTCTTGCTTACAAAAATGGCTATAATTCGCTTCAAGTTTGTGCTAGAAACTTGATTTTTAGCGCAATTTGATTGTCAGATTTTGAGCTTTCAGATGATTTCTAAACGAACTAAAACCCTGGAGGACAAAATAGTGAGCTCAACAGTCGCGAAACTTCACTCACCGACCAATTAACCATGTCCGTTGATCCATTTTCCGGCAGAATCAAGTTATATTCTTCTTTGTTCTTTTTTGCTTTCTTCTGATAAGAACTTCCAGGACGTTTTTGTCCTTGCTTATGATTCTGGMCACCTTGGTATTGGCCATATGGTCTCCAGAACTGATTCTGGTTCTCATTATATCCCAAGTTTTGGGGGAAAGGCGGAAGAGGCGGAGGAGGTGGTGGTGGTGGAATATCCGATGGATTCGGCCATAGAAAACCATTTCGATGGAGATTCGGTCTCAGTTGAGGACCATATGGACCAACGTATGATCCATTGGAGCCAAAGCTGACTCCAGGAGGGCCAGAAAACGATCCATTGTGAGGGAAGAAATTTGGTCCATAGTTTGGCCTGTTCTGGGCAAAGCTTGGTCCACTTTTTGAGCCATTTAAGCCATTTTGATTCTTCTGGAGTGTCGCAGCGTGTCCAGAACTTTCAGTCGAAATTGGTCCATTTGGTGAAAAATTTGGGTCACTTCTTGAGCCATTTAATTCATTCTGAATCGATTCTGAGCCATTTGGGCCAGAATTCAGGCCATTTCGATCCTTAGGATTCTCTCGATTCTTCTCCAAAACTTCCTTTTTGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>294 216 137 114 79 51 31 30 20 19 9</canonical_bands>
                <polymorphic_bands>294 216 167 114 79 51 31 20 19 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACTAAAACCCTGGAGGAC</pcr_primer_p1>
		<pcr_primer_p2>CAAAACTTGGGATATAATGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAACTAAAACCCTGGAGGACAAAATAGTGAGCTCAACAGTCGCGAAACTTCACTCACCGACCAATTAACCATGTCCGTTGATCCATTTTCCGGCAGAATCAAGTTATATTCTTCTTTGTTCTTTTTTGCTTTCTTCTGATAAGAACTTCCAGGACGTTTTTGTCCTTGCTTATGATTCTGGACACCTTGGTATTGGCCATATGGTCTCCAGAACTGATTCTGGTTCTCATTATATCCCAAGTTTTG</canonical_amplicon>
		<polymorphic_amplicon>GAACTAAAACCCTGGAGGACAAAATAGTGAGCTCAACAGTCGCGAAACTTCACTCACCGACCAATTAACCATGTCCGTTGATCCATTTTCCGGCAGAATCAAGTTATATTCTTCTTTGTTCTTTTTTGCTTTCTTCTGATAAGAACTTCCAGGACGTTTTTGTCCTTGCTTATGATTCTGGMCACCTTGGTATTGGCCATATGGTCTCCAGAACTGATTCTGGTTCTCATTATATCCCAAGTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26997</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>102023</contig_pos>
        <strand>+</strand>
        <context>AGTTTTGGGG[A/G]AAAGGYGGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATGGTCTCCAGAACTGATTCTGGTTCTCATTATATCCCAAGTTTTGGGG</left_flank>
        <right_flank>AAAGGCGGAAGAGGCGGAGGAGGTGGTGGTGGTGGAATATCCGATGGATT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGATTTTCCGCCAACCACCAATCCCTGAAAAGTGCACAATTTTCTAGACCTTCTAGATCATTTTCAGGTTTTCACGAATAACAGTTCACCGATTTACAAACATTGGAAAAAAAGTTCAATTTTNNNNNNNNNNTCTCTGCGTCTCTTGCTTACAAAAATGGCTATAATTCGCTTCAAGTTTGTGCTAGAAACTTGATTTTTAGCGCAATTTGATTGTCAGATTTTGAGCTTTCAGATGATTTCTAAACGAACTAAAACCCTGGAGGACAAAATAGTGAGCTCAACAGTCGCGAAACTTCACTCACCGACCAATTAACCATGTCCGTTGATCCATTTTCCGGCAGAATCAAGTTATATTCTTCTTTGTTCTTTTTTGCTTTCTTCTGATAAGAACTTCCAGGACGTTTTTGTCCTTGCTTATGATTCTGGACACCTTGGTATTGGCCATATGGTCTCCAGAACTGATTCTGGTTCTCATTATATCCCAAGTTTTGGGGGAAAGGCGGAAGAGGCGGAGGAGGTGGTGGTGGTGGAATATCCGATGGATTCGGCCATAGAAAACCATTTCGATGGAGATTCGGTCTCAGTTGAGGACCATATGGACCAACGTATGATCCATTGGAGCCAAAGCTGACTCCAGGAGGGCCAGAAAACGATCCATTGTGAGGGAAGAAATTTGGTCCATAGTTTGGCCTGTTCTGGGCAAAGCTTGGTCCACTTTTTGAGCCATTTAAGCCATTTTGATTCTTCTGGAGTGTCGCAGCGTGTCCAGAACTTTCAGTCGAAATTGGTCCATTTGGTGAAAAATTTGGGTCACTTCTTGAGCCATTTAATTCATTCTGAATCGATTCTGAGCCATTTGGGCCAGAATTCAGGCCATTTCGATCCTTAGGATTCTCTCGATTCTTCTCCAAAACTTCCTTTTTGACAGTGGCAGATCCTTGGGACTTCTTCTGGCGTCCAGATTGTTCTACAGGTTGATTTTCGAGACCTTTATT</canonical>
            <polymorphic>AAGGATTTTCCGCCAACCACCAATCCCTGAAAAGTGCACAATTTTCTAGACCTTCTAGATCATTTTCAGGTTTTCACGAATAACAGTTCACCGATTTACAAACATTGGAAAAAAAGTTCAATTTTNNNNNNNNNNTCTCTGCGTCTCTTGCTTACAAAAATGGCTATAATTCGCTTCAAGTTTGTGCTAGAAACTTGATTTTTAGCGCAATTTGATTGTCAGATTTTGAGCTTTCAGATGATTTCTAAACGAACTAAAACCCTGGAGGACAAAATAGTGAGCTCAACAGTCGCGAAACTTCACTCACCGACCAATTAACCATGTCCGTTGATCCATTTTCCGGCAGAATCAAGTTATATTCTTCTTTGTTCTTTTTTGCTTTCTTCTGATAAGAACTTCCAGGACGTTTTTGTCCTTGCTTATGATTCTGGACACCTTGGTATTGGCCATATGGTCTCCAGAACTGATTCTGGTTCTCATTATATCCCAAGTTTTGGGGRAAAGGCGGAAGAGGCGGAGGAGGTGGTGGTGGTGGAATATCCGATGGATTCGGCCATAGAAAACCATTTCGATGGAGATTCGGTCTCAGTTGAGGACCATATGGACCAACGTATGATCCATTGGAGCCAAAGCTGACTCCAGGAGGGCCAGAAAACGATCCATTGTGAGGGAAGAAATTTGGTCCATAGTTTGGCCTGTTCTGGGCAAAGCTTGGTCCACTTTTTGAGCCATTTAAGCCATTTTGATTCTTCTGGAGTGTCGCAGCGTGTCCAGAACTTTCAGTCGAAATTGGTCCATTTGGTGAAAAATTTGGGTCACTTCTTGAGCCATTTAATTCATTCTGAATCGATTCTGAGCCATTTGGGCCAGAATTCAGGCCATTTCGATCCTTAGGATTCTCTCGATTCTTCTCCAAAACTTCCTTTTTGACAGTGGCAGATCCTTGGGACTTCTTCTGGCGTCCAGATTGTTCTACAGGTTGATTTTCGAGACCTTTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTGATAAGAACTTCCAGGAC</pcr_primer_p1>
		<pcr_primer_p2>GGATCATACGTTGGTCCATA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CTTCTGATAAGAACTTCCAGGACGTTTTTGTCCTTGCTTATGATTCTGGACACCTTGGTATTGGCCATATGGTCTCCAGAACTGATTCTGGTTCTCATTATATCCCAAGTTTTGGGGGAAAGGCGGAAGAGGCGGAGGAGGTGGTGGTGGTGGAATATCCGATGGATTCGGCCATAGAAAACCATTTCGATGGAGATTCGGTCTCAGTTGAGGACCATATGGACCAACGTATGATCC</canonical_amplicon>
		<polymorphic_amplicon>CTTCTGATAAGAACTTCCAGGACGTTTTTGTCCTTGCTTATGATTCTGGACACCTTGGTATTGGCCATATGGTCTCCAGAACTGATTCTGGTTCTCATTATATCCCAAGTTTTGGGGRAAAGGCGGAAGAGGCGGAGGAGGTGGTGGTGGTGGAATATCCGATGGATTCGGCCATAGAAAACCATTTCGATGGAGATTCGGTCTCAGTTGAGGACCATATGGACCAACGTATGATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26998</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>102029</contig_pos>
        <strand>+</strand>
        <context>GGGGRAAAGG[C/T]GGAAGAGGCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCCAGAACTGATTCTGGTTCTCATTATATCCCAAGTTTTGGGGGAAAGG</left_flank>
        <right_flank>GGAAGAGGCGGAGGAGGTGGTGGTGGTGGAATATCCGATGGATTCGGCCA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCCGCCAACCACCAATCCCTGAAAAGTGCACAATTTTCTAGACCTTCTAGATCATTTTCAGGTTTTCACGAATAACAGTTCACCGATTTACAAACATTGGAAAAAAAGTTCAATTTTNNNNNNNNNNTCTCTGCGTCTCTTGCTTACAAAAATGGCTATAATTCGCTTCAAGTTTGTGCTAGAAACTTGATTTTTAGCGCAATTTGATTGTCAGATTTTGAGCTTTCAGATGATTTCTAAACGAACTAAAACCCTGGAGGACAAAATAGTGAGCTCAACAGTCGCGAAACTTCACTCACCGACCAATTAACCATGTCCGTTGATCCATTTTCCGGCAGAATCAAGTTATATTCTTCTTTGTTCTTTTTTGCTTTCTTCTGATAAGAACTTCCAGGACGTTTTTGTCCTTGCTTATGATTCTGGACACCTTGGTATTGGCCATATGGTCTCCAGAACTGATTCTGGTTCTCATTATATCCCAAGTTTTGGGGGAAAGGCGGAAGAGGCGGAGGAGGTGGTGGTGGTGGAATATCCGATGGATTCGGCCATAGAAAACCATTTCGATGGAGATTCGGTCTCAGTTGAGGACCATATGGACCAACGTATGATCCATTGGAGCCAAAGCTGACTCCAGGAGGGCCAGAAAACGATCCATTGTGAGGGAAGAAATTTGGTCCATAGTTTGGCCTGTTCTGGGCAAAGCTTGGTCCACTTTTTGAGCCATTTAAGCCATTTTGATTCTTCTGGAGTGTCGCAGCGTGTCCAGAACTTTCAGTCGAAATTGGTCCATTTGGTGAAAAATTTGGGTCACTTCTTGAGCCATTTAATTCATTCTGAATCGATTCTGAGCCATTTGGGCCAGAATTCAGGCCATTTCGATCCTTAGGATTCTCTCGATTCTTCTCCAAAACTTCCTTTTTGACAGTGGCAGATCCTTGGGACTTCTTCTGGCGTCCAGATTGTTCTACAGGTTGATTTTCGAGACCTTTATTGTTCTC</canonical>
            <polymorphic>TTTCCGCCAACCACCAATCCCTGAAAAGTGCACAATTTTCTAGACCTTCTAGATCATTTTCAGGTTTTCACGAATAACAGTTCACCGATTTACAAACATTGGAAAAAAAGTTCAATTTTNNNNNNNNNNTCTCTGCGTCTCTTGCTTACAAAAATGGCTATAATTCGCTTCAAGTTTGTGCTAGAAACTTGATTTTTAGCGCAATTTGATTGTCAGATTTTGAGCTTTCAGATGATTTCTAAACGAACTAAAACCCTGGAGGACAAAATAGTGAGCTCAACAGTCGCGAAACTTCACTCACCGACCAATTAACCATGTCCGTTGATCCATTTTCCGGCAGAATCAAGTTATATTCTTCTTTGTTCTTTTTTGCTTTCTTCTGATAAGAACTTCCAGGACGTTTTTGTCCTTGCTTATGATTCTGGACACCTTGGTATTGGCCATATGGTCTCCAGAACTGATTCTGGTTCTCATTATATCCCAAGTTTTGGGGGAAAGGYGGAAGAGGCGGAGGAGGTGGTGGTGGTGGAATATCCGATGGATTCGGCCATAGAAAACCATTTCGATGGAGATTCGGTCTCAGTTGAGGACCATATGGACCAACGTATGATCCATTGGAGCCAAAGCTGACTCCAGGAGGGCCAGAAAACGATCCATTGTGAGGGAAGAAATTTGGTCCATAGTTTGGCCTGTTCTGGGCAAAGCTTGGTCCACTTTTTGAGCCATTTAAGCCATTTTGATTCTTCTGGAGTGTCGCAGCGTGTCCAGAACTTTCAGTCGAAATTGGTCCATTTGGTGAAAAATTTGGGTCACTTCTTGAGCCATTTAATTCATTCTGAATCGATTCTGAGCCATTTGGGCCAGAATTCAGGCCATTTCGATCCTTAGGATTCTCTCGATTCTTCTCCAAAACTTCCTTTTTGACAGTGGCAGATCCTTGGGACTTCTTCTGGCGTCCAGATTGTTCTACAGGTTGATTTTCGAGACCTTTATTGTTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>494 493 9 4</canonical_bands>
                <polymorphic_bands>503 493 4</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>364 223 143 141 129</canonical_bands>
                <polymorphic_bands>587 143 141 129</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCTGATAAGAACTTCCAGGAC</pcr_primer_p1>
		<pcr_primer_p2>GGATCATACGTTGGTCCATA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CTTCTGATAAGAACTTCCAGGACGTTTTTGTCCTTGCTTATGATTCTGGACACCTTGGTATTGGCCATATGGTCTCCAGAACTGATTCTGGTTCTCATTATATCCCAAGTTTTGGGGGAAAGGCGGAAGAGGCGGAGGAGGTGGTGGTGGTGGAATATCCGATGGATTCGGCCATAGAAAACCATTTCGATGGAGATTCGGTCTCAGTTGAGGACCATATGGACCAACGTATGATCC</canonical_amplicon>
		<polymorphic_amplicon>CTTCTGATAAGAACTTCCAGGACGTTTTTGTCCTTGCTTATGATTCTGGACACCTTGGTATTGGCCATATGGTCTCCAGAACTGATTCTGGTTCTCATTATATCCCAAGTTTTGGGGGAAAGGYGGAAGAGGCGGAGGAGGTGGTGGTGGTGGAATATCCGATGGATTCGGCCATAGAAAACCATTTCGATGGAGATTCGGTCTCAGTTGAGGACCATATGGACCAACGTATGATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb26999</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>102084</contig_pos>
        <strand>+</strand>
        <context>CGGCCATAGA[A/T]AAYCATTTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGGCGGAGGAGGTGGTGGTGGTGGAATATCCGATGGATTCGGCCATAGA</left_flank>
        <right_flank>AACCATTTCGATGGAGATTCGGTCTCAGTTGAGGACCATATGGACCAACG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTCAGGTTTTCACGAATAACAGTTCACCGATTTACAAACATTGGAAAAAAAGTTCAATTTTNNNNNNNNNNTCTCTGCGTCTCTTGCTTACAAAAATGGCTATAATTCGCTTCAAGTTTGTGCTAGAAACTTGATTTTTAGCGCAATTTGATTGTCAGATTTTGAGCTTTCAGATGATTTCTAAACGAACTAAAACCCTGGAGGACAAAATAGTGAGCTCAACAGTCGCGAAACTTCACTCACCGACCAATTAACCATGTCCGTTGATCCATTTTCCGGCAGAATCAAGTTATATTCTTCTTTGTTCTTTTTTGCTTTCTTCTGATAAGAACTTCCAGGACGTTTTTGTCCTTGCTTATGATTCTGGACACCTTGGTATTGGCCATATGGTCTCCAGAACTGATTCTGGTTCTCATTATATCCCAAGTTTTGGGGGAAAGGCGGAAGAGGCGGAGGAGGTGGTGGTGGTGGAATATCCGATGGATTCGGCCATAGAAAACCATTTCGATGGAGATTCGGTCTCAGTTGAGGACCATATGGACCAACGTATGATCCATTGGAGCCAAAGCTGACTCCAGGAGGGCCAGAAAACGATCCATTGTGAGGGAAGAAATTTGGTCCATAGTTTGGCCTGTTCTGGGCAAAGCTTGGTCCACTTTTTGAGCCATTTAAGCCATTTTGATTCTTCTGGAGTGTCGCAGCGTGTCCAGAACTTTCAGTCGAAATTGGTCCATTTGGTGAAAAATTTGGGTCACTTCTTGAGCCATTTAATTCATTCTGAATCGATTCTGAGCCATTTGGGCCAGAATTCAGGCCATTTCGATCCTTAGGATTCTCTCGATTCTTCTCCAAAACTTCCTTTTTGACAGTGGCAGATCCTTGGGACTTCTTCTGGCGTCCAGATTGTTCTACAGGTTGATTTTCGAGACCTTTATTGTTCTCGGATTGGCTAGATTCATTTTCCACGACTTCCTGTTTTATCGACCTAGCTGGAATT</canonical>
            <polymorphic>ATTTTCAGGTTTTCACGAATAACAGTTCACCGATTTACAAACATTGGAAAAAAAGTTCAATTTTNNNNNNNNNNTCTCTGCGTCTCTTGCTTACAAAAATGGCTATAATTCGCTTCAAGTTTGTGCTAGAAACTTGATTTTTAGCGCAATTTGATTGTCAGATTTTGAGCTTTCAGATGATTTCTAAACGAACTAAAACCCTGGAGGACAAAATAGTGAGCTCAACAGTCGCGAAACTTCACTCACCGACCAATTAACCATGTCCGTTGATCCATTTTCCGGCAGAATCAAGTTATATTCTTCTTTGTTCTTTTTTGCTTTCTTCTGATAAGAACTTCCAGGACGTTTTTGTCCTTGCTTATGATTCTGGACACCTTGGTATTGGCCATATGGTCTCCAGAACTGATTCTGGTTCTCATTATATCCCAAGTTTTGGGGGAAAGGCGGAAGAGGCGGAGGAGGTGGTGGTGGTGGAATATCCGATGGATTCGGCCATAGAWAACCATTTCGATGGAGATTCGGTCTCAGTTGAGGACCATATGGACCAACGTATGATCCATTGGAGCCAAAGCTGACTCCAGGAGGGCCAGAAAACGATCCATTGTGAGGGAAGAAATTTGGTCCATAGTTTGGCCTGTTCTGGGCAAAGCTTGGTCCACTTTTTGAGCCATTTAAGCCATTTTGATTCTTCTGGAGTGTCGCAGCGTGTCCAGAACTTTCAGTCGAAATTGGTCCATTTGGTGAAAAATTTGGGTCACTTCTTGAGCCATTTAATTCATTCTGAATCGATTCTGAGCCATTTGGGCCAGAATTCAGGCCATTTCGATCCTTAGGATTCTCTCGATTCTTCTCCAAAACTTCCTTTTTGACAGTGGCAGATCCTTGGGACTTCTTCTGGCGTCCAGATTGTTCTACAGGTTGATTTTCGAGACCTTTATTGTTCTCGGATTGGCTAGATTCATTTTCCACGACTTCCTGTTTTATCGACCTAGCTGGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTGATAAGAACTTCCAGGAC</pcr_primer_p1>
		<pcr_primer_p2>GGATCATACGTTGGTCCATA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CTTCTGATAAGAACTTCCAGGACGTTTTTGTCCTTGCTTATGATTCTGGACACCTTGGTATTGGCCATATGGTCTCCAGAACTGATTCTGGTTCTCATTATATCCCAAGTTTTGGGGGAAAGGCGGAAGAGGCGGAGGAGGTGGTGGTGGTGGAATATCCGATGGATTCGGCCATAGAAAACCATTTCGATGGAGATTCGGTCTCAGTTGAGGACCATATGGACCAACGTATGATCC</canonical_amplicon>
		<polymorphic_amplicon>CTTCTGATAAGAACTTCCAGGACGTTTTTGTCCTTGCTTATGATTCTGGACACCTTGGTATTGGCCATATGGTCTCCAGAACTGATTCTGGTTCTCATTATATCCCAAGTTTTGGGGGAAAGGCGGAAGAGGCGGAGGAGGTGGTGGTGGTGGAATATCCGATGGATTCGGCCATAGAWAACCATTTCGATGGAGATTCGGTCTCAGTTGAGGACCATATGGACCAACGTATGATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27000</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>102087</contig_pos>
        <strand>+</strand>
        <context>CCATAGAWAA[C/T]CATTTCGATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCGGAGGAGGTGGTGGTGGTGGAATATCCGATGGATTCGGCCATAGAAAA</left_flank>
        <right_flank>CATTTCGATGGAGATTCGGTCTCAGTTGAGGACCATATGGACCAACGTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAGGTTTTCACGAATAACAGTTCACCGATTTACAAACATTGGAAAAAAAGTTCAATTTTNNNNNNNNNNTCTCTGCGTCTCTTGCTTACAAAAATGGCTATAATTCGCTTCAAGTTTGTGCTAGAAACTTGATTTTTAGCGCAATTTGATTGTCAGATTTTGAGCTTTCAGATGATTTCTAAACGAACTAAAACCCTGGAGGACAAAATAGTGAGCTCAACAGTCGCGAAACTTCACTCACCGACCAATTAACCATGTCCGTTGATCCATTTTCCGGCAGAATCAAGTTATATTCTTCTTTGTTCTTTTTTGCTTTCTTCTGATAAGAACTTCCAGGACGTTTTTGTCCTTGCTTATGATTCTGGACACCTTGGTATTGGCCATATGGTCTCCAGAACTGATTCTGGTTCTCATTATATCCCAAGTTTTGGGGGAAAGGCGGAAGAGGCGGAGGAGGTGGTGGTGGTGGAATATCCGATGGATTCGGCCATAGAAAACCATTTCGATGGAGATTCGGTCTCAGTTGAGGACCATATGGACCAACGTATGATCCATTGGAGCCAAAGCTGACTCCAGGAGGGCCAGAAAACGATCCATTGTGAGGGAAGAAATTTGGTCCATAGTTTGGCCTGTTCTGGGCAAAGCTTGGTCCACTTTTTGAGCCATTTAAGCCATTTTGATTCTTCTGGAGTGTCGCAGCGTGTCCAGAACTTTCAGTCGAAATTGGTCCATTTGGTGAAAAATTTGGGTCACTTCTTGAGCCATTTAATTCATTCTGAATCGATTCTGAGCCATTTGGGCCAGAATTCAGGCCATTTCGATCCTTAGGATTCTCTCGATTCTTCTCCAAAACTTCCTTTTTGACAGTGGCAGATCCTTGGGACTTCTTCTGGCGTCCAGATTGTTCTACAGGTTGATTTTCGAGACCTTTATTGTTCTCGGATTGGCTAGATTCATTTTCCACGACTTCCTGTTTTATCGACCTAGCTGGAATTGGA</canonical>
            <polymorphic>TTCAGGTTTTCACGAATAACAGTTCACCGATTTACAAACATTGGAAAAAAAGTTCAATTTTNNNNNNNNNNTCTCTGCGTCTCTTGCTTACAAAAATGGCTATAATTCGCTTCAAGTTTGTGCTAGAAACTTGATTTTTAGCGCAATTTGATTGTCAGATTTTGAGCTTTCAGATGATTTCTAAACGAACTAAAACCCTGGAGGACAAAATAGTGAGCTCAACAGTCGCGAAACTTCACTCACCGACCAATTAACCATGTCCGTTGATCCATTTTCCGGCAGAATCAAGTTATATTCTTCTTTGTTCTTTTTTGCTTTCTTCTGATAAGAACTTCCAGGACGTTTTTGTCCTTGCTTATGATTCTGGACACCTTGGTATTGGCCATATGGTCTCCAGAACTGATTCTGGTTCTCATTATATCCCAAGTTTTGGGGGAAAGGCGGAAGAGGCGGAGGAGGTGGTGGTGGTGGAATATCCGATGGATTCGGCCATAGAAAAYCATTTCGATGGAGATTCGGTCTCAGTTGAGGACCATATGGACCAACGTATGATCCATTGGAGCCAAAGCTGACTCCAGGAGGGCCAGAAAACGATCCATTGTGAGGGAAGAAATTTGGTCCATAGTTTGGCCTGTTCTGGGCAAAGCTTGGTCCACTTTTTGAGCCATTTAAGCCATTTTGATTCTTCTGGAGTGTCGCAGCGTGTCCAGAACTTTCAGTCGAAATTGGTCCATTTGGTGAAAAATTTGGGTCACTTCTTGAGCCATTTAATTCATTCTGAATCGATTCTGAGCCATTTGGGCCAGAATTCAGGCCATTTCGATCCTTAGGATTCTCTCGATTCTTCTCCAAAACTTCCTTTTTGACAGTGGCAGATCCTTGGGACTTCTTCTGGCGTCCAGATTGTTCTACAGGTTGATTTTCGAGACCTTTATTGTTCTCGGATTGGCTAGATTCATTTTCCACGACTTCCTGTTTTATCGACCTAGCTGGAATTGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>BstXI</enzyme>
                </isoschizomers>
                <canonical_bands>507 493</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCTGATAAGAACTTCCAGGAC</pcr_primer_p1>
		<pcr_primer_p2>GGATCATACGTTGGTCCATA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CTTCTGATAAGAACTTCCAGGACGTTTTTGTCCTTGCTTATGATTCTGGACACCTTGGTATTGGCCATATGGTCTCCAGAACTGATTCTGGTTCTCATTATATCCCAAGTTTTGGGGGAAAGGCGGAAGAGGCGGAGGAGGTGGTGGTGGTGGAATATCCGATGGATTCGGCCATAGAAAACCATTTCGATGGAGATTCGGTCTCAGTTGAGGACCATATGGACCAACGTATGATCC</canonical_amplicon>
		<polymorphic_amplicon>CTTCTGATAAGAACTTCCAGGACGTTTTTGTCCTTGCTTATGATTCTGGACACCTTGGTATTGGCCATATGGTCTCCAGAACTGATTCTGGTTCTCATTATATCCCAAGTTTTGGGGGAAAGGCGGAAGAGGCGGAGGAGGTGGTGGTGGTGGAATATCCGATGGATTCGGCCATAGAAAAYCATTTCGATGGAGATTCGGTCTCAGTTGAGGACCATATGGACCAACGTATGATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27001</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>143259</contig_pos>
        <strand>+</strand>
        <context>GCCAGTAAAT[G/T]TTCTGGCACG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGCTCCTCTCAAAACGCGCCAAGCAAAAATCCGGAAAAGCGCCAGTAAAT</left_flank>
        <right_flank>TTCTGGCACGTTTGTGGATTTTTTCGCAGTTTGGGAGACCGTACAAATCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGTCCGTAGCGTTTCTCGCGCTTAAAACTGTCCGCCGGGTACAGCGCTCGCTGATAGAGAATGCTGTTGATGCCGAAATCTGAAAATTTCGGAAAATTCGAGTCAGAAACTTGGATTTTGCGTACGAAAGAACTCCTTGACGAGTGTCGCCGATCCTTTGAGTGTTATCGCGTTTTGTGTTTTCACATCGGTCATTTTTGACTGAAATTTTTGTTTTTAACACTTAAAAATACATACAAATCGATAAAAATCGAAAAAATGACCACAACACGCTCTCCCACAGAACAATTCCGAACTGCAAATTAATTTATGATCTACAGAAAAAAAGTTTGGCGCCATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTCTGTGGGAGAGCGTGCACAAATCCTCCGAAAACCATCAAAAACAGTTTTAAAATCTCAAGTTTCGCGCTCCTCTCAAAACGCGCCAAGCAAAAATCCGGAAAAGCGCCAGTAAATGTTCTGGCACGTTTGTGGATTTTTTCGCAGTTTGGGAGACCGTACAAATCGGGGAGACACAAGAAAGCGGGATAGCGGAGTGTCGTTGCAAAAACAATTGAAACCTGAATTTTGCAAAGGTTTTTCGCGATTTAGATAGATTTGTAAATACATTTTTGATGGAAAAAAACAATGGATATGAAATTTTAATCGTATTGCCGAAGGTAACTGATGATAATTCACATTTTTCCTGTAAAAATATGCGTTATTTGTCCGGAAAGAATATGTGAATCCATGTAATCGTTTGTCTCGTGCTCTCAATCGTAAGCCTTCCTTCGGCTAAAGTTATGAATAATCAACCGATTTCGCTATTATTTCAGTGCTTTCATAATATCATTAATGAGCTCTACGAGCAAAGAAGCTAACAAACCGAGTGCTGAACGCTATTTGAATAAGCTGTTCGCTGATCTTTATCATCTTGTCAATTCGTAATTTAAAAAGGAAGAGTTCCCTGCTGATGAG</canonical>
            <polymorphic>CCAGTCCGTAGCGTTTCTCGCGCTTAAAACTGTCCGCCGGGTACAGCGCTCGCTGATAGAGAATGCTGTTGATGCCGAAATCTGAAAATTTCGGAAAATTCGAGTCAGAAACTTGGATTTTGCGTACGAAAGAACTCCTTGACGAGTGTCGCCGATCCTTTGAGTGTTATCGCGTTTTGTGTTTTCACATCGGTCATTTTTGACTGAAATTTTTGTTTTTAACACTTAAAAATACATACAAATCGATAAAAATCGAAAAAATGACCACAACACGCTCTCCCACAGAACAATTCCGAACTGCAAATTAATTTATGATCTACAGAAAAAAAGTTTGGCGCCATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTCTGTGGGAGAGCGTGCACAAATCCTCCGAAAACCATCAAAAACAGTTTTAAAATCTCAAGTTTCGCGCTCCTCTCAAAACGCGCCAAGCAAAAATCCGGAAAAGCGCCAGTAAATKTTCTGGCACGTTTGTGGATTTTTTCGCAGTTTGGGAGACCGTACAAATCGGGGAGACACAAGAAAGCGGGATAGCGGAGTGTCGTTGCAAAAACAATTGAAACCTGAATTTTGCAAAGGTTTTTCGCGATTTAGATAGATTTGTAAATACATTTTTGATGGAAAAAAACAATGGATATGAAATTTTAATCGTATTGCCGAAGGTAACTGATGATAATTCACATTTTTCCTGTAAAAATATGCGTTATTTGTCCGGAAAGAATATGTGAATCCATGTAATCGTTTGTCTCGTGCTCTCAATCGTAAGCCTTCCTTCGGCTAAAGTTATGAATAATCAACCGATTTCGCTATTATTTCAGTGCTTTCATAATATCATTAATGAGCTCTACGAGCAAAGAAGCTAACAAACCGAGTGCTGAACGCTATTTGAATAAGCTGTTCGCTGATCTTTATCATCTTGTCAATTCGTAATTTAAAAAGGAAGAGTTCCCTGCTGATGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTATCTCTGTGGGAGAGC</pcr_primer_p1>
		<pcr_primer_p2>AAAAACCTTTGCAAAATTCAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTTATCTCTGTGGGAGAGCGTGCACAAATCCTCCGAAAACCATCAAAAACAGTTTTAAAATCTCAAGTTTCGCGCTCCTCTCAAAACGCGCCAAGCAAAAATCCGGAAAAGCGCCAGTAAATGTTCTGGCACGTTTGTGGATTTTTTCGCAGTTTGGGAGACCGTACAAATCGGGGAGACACAAGAAAGCGGGATAGCGGAGTGTCGTTGCAAAAACAATTGAAACCTGAATTTTGCAAAGGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTATCTCTGTGGGAGAGCGTGCACAAATCCTCCGAAAACCATCAAAAACAGTTTTAAAATCTCAAGTTTCGCGCTCCTCTCAAAACGCGCCAAGCAAAAATCCGGAAAAGCGCCAGTAAATKTTCTGGCACGTTTGTGGATTTTTTCGCAGTTTGGGAGACCGTACAAATCGGGGAGACACAAGAAAGCGGGATAGCGGAGTGTCGTTGCAAAAACAATTGAAACCTGAATTTTGCAAAGGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27002</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>168027</contig_pos>
        <strand>+</strand>
        <context>TAAGAAAAAA[C/T]GGCAAACGCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGACGGTTTTTTGAAAAATCTGAATTCTCAAAAAATTCGATAAGAAAAAA</left_flank>
        <right_flank>GGCAAACGCGCTATACTGCAACTGGAAACCGGTTTCTCAAACTCCTCAAA</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACGCGTCGCGGTCGGTGCGTCGCGTGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGTCTCTCCGAATGGCTATAACTCGCGCTGGAATAGGCCTAGAAAACTGATTTTTGTTGCATTTTATCAGCTAAAAAGTGTATTTTAAGACGGTTTTTTGAAAAATCTGAATTCTCAAAAAATTCGATAAGAAAAAACGGCAAACGCGCTATACTGCAACTGGAAACCGGTTTCTCAAACTCCTCAAAACTCGAAATTCTCAAAAATCATTGGTTTCACCGGTTTTGTTTTATCAAGACCTTTAAAAAGATCCCAAACACGACTAGGCTCCGCTCATTTCGATTTTTCAGACGCGTCGCGGTCGGTGCGTCGCGTGTCGAGGTGAAATTTCAAAATGGGCAGAACCTAGTCGTGTTCGGGCTCATTTTGAAGCATTTTCTAATAGAAATAAGTAAAATTTTTAAACTTTGAAAAAAAACTTTTAAAAAGGTAAAATGCGTTTTTTTTCTGAATTTTTGTTCGAATTTCAGTTTTTTTTGCTGAAAATTGAAGATTTTTTGAAATATTTTGCGTTATTCTTACTTATCTTGCCGAGTGCTTCAAAATGAGCCTAAACACGGCTAGGCTCCGGCCATTTTGATTTTCACCTCGACACGCGACGCACCGACCGCGACGCGCCCGAAAAACCAAAGTGGGCG</canonical>
            <polymorphic>AGACGCGTCGCGGTCGGTGCGTCGCGTGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGTCTCTCCGAATGGCTATAACTCGCGCTGGAATAGGCCTAGAAAACTGATTTTTGTTGCATTTTATCAGCTAAAAAGTGTATTTTAAGACGGTTTTTTGAAAAATCTGAATTCTCAAAAAATTCGATAAGAAAAAAYGGCAAACGCGCTATACTGCAACTGGAAACCGGTTTCTCAAACTCCTCAAAACTCGAAATTCTCAAAAATCATTGGTTTCACCGGTTTTGTTTTATCAAGACCTTTAAAAAGATCCCAAACACGACTAGGCTCCGCTCATTTCGATTTTTCAGACGCGTCGCGGTCGGTGCGTCGCGTGTCGAGGTGAAATTTCAAAATGGGCAGAACCTAGTCGTGTTCGGGCTCATTTTGAAGCATTTTCTAATAGAAATAAGTAAAATTTTTAAACTTTGAAAAAAAACTTTTAAAAAGGTAAAATGCGTTTTTTTTCTGAATTTTTGTTCGAATTTCAGTTTTTTTTGCTGAAAATTGAAGATTTTTTGAAATATTTTGCGTTATTCTTACTTATCTTGCCGAGTGCTTCAAAATGAGCCTAAACACGGCTAGGCTCCGGCCATTTTGATTTTCACCTCGACACGCGACGCACCGACCGCGACGCGCCCGAAAAACCAAAGTGGGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAATTTTACATTTTCTATTTAGC</pcr_primer_p1>
		<pcr_primer_p2>GAGTTTTGAGGAGTTTGAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>665</pcr_amplicon_size>
		<canonical_amplicon>ACGGCAAACGCGCTATACTGCAACTGGAAACCGGTTTCTCAAACTCCTCAAAACTC</canonical_amplicon>
		<polymorphic_amplicon>AYGGCAAACGCGCTATACTGCAACTGGAAACCGGTTTCTCAAACTCCTCAAAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27003</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>168108</contig_pos>
        <strand></strand>
        <context>ATTGGTTTCA[C/A]MGGTtttgtt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GGTTTCTCAAACTCCTCAAAACTCGAAATTCTCAAAAATCATTGGTTTCA</left_flank>
        <right_flank>CGGTTTTGTTTTATCAAGACCTTTAAAAAGATCCCAAACACGACTAGGCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGTCTCTCCGAATGGCTATAACTCGCGCTGGAATAGGCCTAGAAAACTGATTTTTGTTGCATTTTATCAGCTAAAAAGTGTATTTTAAGACGGTTTTTTGAAAAATCTGAATTCTCAAAAAATTCGATAAGAAAAAACGGCAAACGCGCTATACTGCAACTGGAAACCGGTTTCTCAAACTCCTCAAAACTCGAAATTCTCAAAAATCATTGGTTTCACCGGTTTTGTTTTATCAAGACCTTTAAAAAGATCCCAAACACGACTAGGCTCCGCTCATTTCGATTTTTCAGACGCGTCGCGGTCGGTGCGTCGCGTGTCGAGGTGAAATTTCAAAATGGGCAGAACCTAGTCGTGTTCGGGCTCATTTTGAAGCATTTTCTAATAGAAATAAGTAAAATTTTTAAACTTTGAAAAAAAACTTTTAAAAAGGTAAAATGCGTTTTTTTTCTGAATTTTTGTTCGAATTTCAGTTTTTTTTGCTGAAAATTGAAGATTTTTTGAAATATTTTGCGTTATTCTTACTTATCTTGCCGAGTGCTTCAAAATGAGCCTAAACACGGCTAGGCTCCGGCCATTTTGATTTTCACCTCGACACGCGACGCACCGACCGCGACGCGCCCGAAAAACCAAAGTGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTAAAGCTCTAAACAAGTAGAACTCTATGAAAATAGTTGAAAACTAAATAAACCTC</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGTCTCTCCGAATGGCTATAACTCGCGCTGGAATAGGCCTAGAAAACTGATTTTTGTTGCATTTTATCAGCTAAAAAGTGTATTTTAAGACGGTTTTTTGAAAAATCTGAATTCTCAAAAAATTCGATAAGAAAAAACGGCAAACGCGCTATACTGCAACTGGAAACCGGTTTCTCAAACTCCTCAAAACTCGAAATTCTCAAAAATCATTGGTTTCAMCGGTTTTGTTTTATCAAGACCTTTAAAAAGATCCCAAACACGACTAGGCTCCGCTCATTTCGATTTTTCAGACGCGTCGCGGTCGGTGCGTCGCGTGTCGAGGTGAAATTTCAAAATGGGCAGAACCTAGTCGTGTTCGGGCTCATTTTGAAGCATTTTCTAATAGAAATAAGTAAAATTTTTAAACTTTGAAAAAAAACTTTTAAAAAGGTAAAATGCGTTTTTTTTCTGAATTTTTGTTCGAATTTCAGTTTTTTTTGCTGAAAATTGAAGATTTTTTGAAATATTTTGCGTTATTCTTACTTATCTTGCCGAGTGCTTCAAAATGAGCCTAAACACGGCTAGGCTCCGGCCATTTTGATTTTCACCTCGACACGCGACGCACCGACCGCGACGCGCCCGAAAAACCAAAGTGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTAAAGCTCTAAACAAGTAGAACTCTATGAAAATAGTTGAAAACTAAATAAACCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACCGGT</site>
                <isoschizomers>
                    <enzyme>AgeI</enzyme>
                    <enzyme>AsiAI</enzyme>
                    <enzyme>BshTI</enzyme>
                    <enzyme>CspAI</enzyme>
                    <enzyme>PinAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 447 52</canonical_bands>
                <polymorphic_bands>553 447</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>501 447 52</canonical_bands>
                <polymorphic_bands>553 447</polymorphic_bands>
            </assay>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>501 447 52</canonical_bands>
                <polymorphic_bands>553 447</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>448 349 151 52</canonical_bands>
                <polymorphic_bands>448 401 151</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>361 183 138 68 48 41 31 30 29 20 17 9 9 8 8</canonical_bands>
                <polymorphic_bands>361 183 179 68 48 31 30 29 20 17 9 9 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTCTCAAACTCCTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGGAGTACTTGAAGTTTATCAATG</pcr_primer_p2>
		<pcr_amplicon_size>574</pcr_amplicon_size>
		<canonical_amplicon>GGTTTCTCAAACTCCTCAAAACTCGAAATTCTCAAAAATCATTGGTTTCACCGGTTTTGTTTTATCAAGACCTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTTCTCAAACTCCTCAAAACTCGAAATTCTCAAAAATCATTGGTTTCAMCGGTTTTGTTTTATCAAGACCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27004</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>168109</contig_pos>
        <strand>+</strand>
        <context>TTGGTTTCAM[A/C]GGTtttgttt</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTTCTCAAACTCCTCAAAACTCGAAATTCTCAAAAATCATTGGTTTCAC</left_flank>
        <right_flank>GGTTTTGTTTTATCAAGACCTTTAAAAAGATCCCAAACACGACTAGGCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGTCTCTCCGAATGGCTATAACTCGCGCTGGAATAGGCCTAGAAAACTGATTTTTGTTGCATTTTATCAGCTAAAAAGTGTATTTTAAGACGGTTTTTTGAAAAATCTGAATTCTCAAAAAATTCGATAAGAAAAAACGGCAAACGCGCTATACTGCAACTGGAAACCGGTTTCTCAAACTCCTCAAAACTCGAAATTCTCAAAAATCATTGGTTTCACCGGTTTTGTTTTATCAAGACCTTTAAAAAGATCCCAAACACGACTAGGCTCCGCTCATTTCGATTTTTCAGACGCGTCGCGGTCGGTGCGTCGCGTGTCGAGGTGAAATTTCAAAATGGGCAGAACCTAGTCGTGTTCGGGCTCATTTTGAAGCATTTTCTAATAGAAATAAGTAAAATTTTTAAACTTTGAAAAAAAACTTTTAAAAAGGTAAAATGCGTTTTTTTTCTGAATTTTTGTTCGAATTTCAGTTTTTTTTGCTGAAAATTGAAGATTTTTTGAAATATTTTGCGTTATTCTTACTTATCTTGCCGAGTGCTTCAAAATGAGCCTAAACACGGCTAGGCTCCGGCCATTTTGATTTTCACCTCGACACGCGACGCACCGACCGCGACGCGCCCGAAAAACCAAAGTGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTAAAGCTCTAAACAAGTAGAACTCTATGAAAATAGTTGAAAACTAAATAAACCTCA</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGTCTCTCCGAATGGCTATAACTCGCGCTGGAATAGGCCTAGAAAACTGATTTTTGTTGCATTTTATCAGCTAAAAAGTGTATTTTAAGACGGTTTTTTGAAAAATCTGAATTCTCAAAAAATTCGATAAGAAAAAACGGCAAACGCGCTATACTGCAACTGGAAACCGGTTTCTCAAACTCCTCAAAACTCGAAATTCTCAAAAATCATTGGTTTCACMGGTTTTGTTTTATCAAGACCTTTAAAAAGATCCCAAACACGACTAGGCTCCGCTCATTTCGATTTTTCAGACGCGTCGCGGTCGGTGCGTCGCGTGTCGAGGTGAAATTTCAAAATGGGCAGAACCTAGTCGTGTTCGGGCTCATTTTGAAGCATTTTCTAATAGAAATAAGTAAAATTTTTAAACTTTGAAAAAAAACTTTTAAAAAGGTAAAATGCGTTTTTTTTCTGAATTTTTGTTCGAATTTCAGTTTTTTTTGCTGAAAATTGAAGATTTTTTGAAATATTTTGCGTTATTCTTACTTATCTTGCCGAGTGCTTCAAAATGAGCCTAAACACGGCTAGGCTCCGGCCATTTTGATTTTCACCTCGACACGCGACGCACCGACCGCGACGCGCCCGAAAAACCAAAGTGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTAAAGCTCTAAACAAGTAGAACTCTATGAAAATAGTTGAAAACTAAATAAACCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACCGGT</site>
                <isoschizomers>
                    <enzyme>AgeI</enzyme>
                    <enzyme>AsiAI</enzyme>
                    <enzyme>BshTI</enzyme>
                    <enzyme>CspAI</enzyme>
                    <enzyme>PinAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 446 52</canonical_bands>
                <polymorphic_bands>554 446</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>502 446 52</canonical_bands>
                <polymorphic_bands>554 446</polymorphic_bands>
            </assay>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>502 446 52</canonical_bands>
                <polymorphic_bands>554 446</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>447 349 152 52</canonical_bands>
                <polymorphic_bands>447 401 152</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTCTCAAACTCCTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGGAGTACTTGAAGTTTATCAATG</pcr_primer_p2>
		<pcr_amplicon_size>574</pcr_amplicon_size>
		<canonical_amplicon>GGTTTCTCAAACTCCTCAAAACTCGAAATTCTCAAAAATCATTGGTTTCACCGGTTTTGTTTTATCAAGACCTTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTTCTCAAACTCCTCAAAACTCGAAATTCTCAAAAATCATTGGTTTCACMGGTTTTGTTTTATCAAGACCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27005</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>191074</contig_pos>
        <strand>+</strand>
        <context>ATTTAGCTAA[A/T]TTATGGCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTATTTTAAGGCAAACTTTAAACTAGCTTTCGAGACTAGAATTTAGCTAA</left_flank>
        <right_flank>TTATGGCAAATTTTTGGGCTCATTTTCAGGGCTAAATTTAGCTAATCTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGGAGGAAATTAATTTCCTCCTTCTCGCCTTCTACCCCATGAATTTGAAAATACGTGTAGAACCTAAAAGAGGAGGAGAATTAGGAATTAATTAGCTGCTCCAAAAGAATTTTCAATTAAGAAAAATTGCCAATTTAGACTAGATAGACACTTCTAATTTCTCAATAGTGACGGATTAGTGGAATTTGTAAGACGAGTACCTTTTTTTTCTCAGAGAATTTATGGTCATTTTCAGATAGGTTGAACCCTAGATTCGGTCTCTTTTTAGCCATTTTCAGTCATTTTTAGAGACAAAGGAACCTAGAATTTTGCTTTCCAGGAGAAAACGTGACTTTTTGAAAGTTTTCTTCCTGGGGGAAACTCTAGCTCCGATTTCCCACGAGTTTAGTTGAATTTTGACCCATTTTCTGGCTCATATACAGGGCTAAAATTCGGCTGAATTTTGACCTATTTTAAGGCAAACTTTAAACTAGCTTTCGAGACTAGAATTTAGCTAAATTATGGCAAATTTTTGGGCTCATTTTCAGGGCTAAATTTAGCTAATCTTTAATCCTTTTTTAGGCTCTTTACCAGGTCTAAAATTCAGTTTCTGCCATTAGAGATGTTCTAATCTCAATATATCCTTGACCGTTTTTCTACCTTTTTTCCCTCTTTTTCTTGATCCTATCCTCATTCTTCTATTTTCTTTTCTTTCCTCCGCCCGTGTTTCTTCATGACGCAATTCGTATCTCTGCGTCTCTCTCCAGCAGTCCCTCTATCTCTTTATCTCTAACTTTTCACGCACAGCCCGTATGGTTGTTGGTTACAAATCACTCATATATGAACCATAACAATTGGATGTTTCTCTGTAGATTTAGATTCATTTTCTGATGACCTCTTTTGCCAAGCCTTTATAGAAAAAAGAGTGAAATTGGAAGAGAAAATAACGAGAAGACGTGCGAAAAGTGACTAGAAAATACACTTTTTTCTTCTTCAGAGAGACGTAGAGATAGAATTCT</canonical>
            <polymorphic>GGAGGAGGAAATTAATTTCCTCCTTCTCGCCTTCTACCCCATGAATTTGAAAATACGTGTAGAACCTAAAAGAGGAGGAGAATTAGGAATTAATTAGCTGCTCCAAAAGAATTTTCAATTAAGAAAAATTGCCAATTTAGACTAGATAGACACTTCTAATTTCTCAATAGTGACGGATTAGTGGAATTTGTAAGACGAGTACCTTTTTTTTCTCAGAGAATTTATGGTCATTTTCAGATAGGTTGAACCCTAGATTCGGTCTCTTTTTAGCCATTTTCAGTCATTTTTAGAGACAAAGGAACCTAGAATTTTGCTTTCCAGGAGAAAACGTGACTTTTTGAAAGTTTTCTTCCTGGGGGAAACTCTAGCTCCGATTTCCCACGAGTTTAGTTGAATTTTGACCCATTTTCTGGCTCATATACAGGGCTAAAATTCGGCTGAATTTTGACCTATTTTAAGGCAAACTTTAAACTAGCTTTCGAGACTAGAATTTAGCTAAWTTATGGCAAATTTTTGGGCTCATTTTCAGGGCTAAATTTAGCTAATCTTTAATCCTTTTTTAGGCTCTTTACCAGGTCTAAAATTCAGTTTCTGCCATTAGAGATGTTCTAATCTCAATATATCCTTGACCGTTTTTCTACCTTTTTTCCCTCTTTTTCTTGATCCTATCCTCATTCTTCTATTTTCTTTTCTTTCCTCCGCCCGTGTTTCTTCATGACGCAATTCGTATCTCTGCGTCTCTCTCCAGCAGTCCCTCTATCTCTTTATCTCTAACTTTTCACGCACAGCCCGTATGGTTGTTGGTTACAAATCACTCATATATGAACCATAACAATTGGATGTTTCTCTGTAGATTTAGATTCATTTTCTGATGACCTCTTTTGCCAAGCCTTTATAGAAAAAAGAGTGAAATTGGAAGAGAAAATAACGAGAAGACGTGCGAAAAGTGACTAGAAAATACACTTTTTTCTTCTTCAGAGAGACGTAGAGATAGAATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>140 112 88 87 84 77 48 47 37 37 34 30 27 26 24 18 10 10 10 10 9 7 7 7 6 4 4</canonical_bands>
                <polymorphic_bands>140 112 88 87 84 77 48 47 37 37 34 30 27 26 24 20 18 10 10 9 7 7 7 6 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAGTTTAGTTGAATTTTGACC</pcr_primer_p1>
		<pcr_primer_p2>GGTCAAGGATATATTGAGATTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGAGTTTAGTTGAATTTTGACCCATTTTCTGGCTCATATACAGGGCTAAAATTCGGCTGAATTTTGACCTATTTTAAGGCAAACTTTAAACTAGCTTTCGAGACTAGAATTTAGCTAAATTATGGCAAATTTTTGGGCTCATTTTCAGGGCTAAATTTAGCTAATCTTTAATCCTTTTTTAGGCTCTTTACCAGGTCTAAAATTCAGTTTCTGCCATTAGAGATGTTCTAATCTCAATATATCCTTGACC</canonical_amplicon>
		<polymorphic_amplicon>CGAGTTTAGTTGAATTTTGACCCATTTTCTGGCTCATATACAGGGCTAAAATTCGGCTGAATTTTGACCTATTTTAAGGCAAACTTTAAACTAGCTTTCGAGACTAGAATTTAGCTAAWTTATGGCAAATTTTTGGGCTCATTTTCAGGGCTAAATTTAGCTAATCTTTAATCCTTTTTTAGGCTCTTTACCAGGTCTAAAATTCAGTTTCTGCCATTAGAGATGTTCTAATCTCAATATATCCTTGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27006</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>191130</contig_pos>
        <strand>+</strand>
        <context>TCTTTAATCC[G/T]TTTTTAGGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCAAATTTTTGGGCTCATTTTCAGGGCTAAATTTAGCTAATCTTTAATCC</left_flank>
        <right_flank>TTTTTAGGCTCTTTACCAGGTCTAAAATTCAGTTTCTGCCATTAGAGATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGTAGAACCTAAAAGAGGAGGAGAATTAGGAATTAATTAGCTGCTCCAAAAGAATTTTCAATTAAGAAAAATTGCCAATTTAGACTAGATAGACACTTCTAATTTCTCAATAGTGACGGATTAGTGGAATTTGTAAGACGAGTACCTTTTTTTTCTCAGAGAATTTATGGTCATTTTCAGATAGGTTGAACCCTAGATTCGGTCTCTTTTTAGCCATTTTCAGTCATTTTTAGAGACAAAGGAACCTAGAATTTTGCTTTCCAGGAGAAAACGTGACTTTTTGAAAGTTTTCTTCCTGGGGGAAACTCTAGCTCCGATTTCCCACGAGTTTAGTTGAATTTTGACCCATTTTCTGGCTCATATACAGGGCTAAAATTCGGCTGAATTTTGACCTATTTTAAGGCAAACTTTAAACTAGCTTTCGAGACTAGAATTTAGCTAAATTATGGCAAATTTTTGGGCTCATTTTCAGGGCTAAATTTAGCTAATCTTTAATCCTTTTTTAGGCTCTTTACCAGGTCTAAAATTCAGTTTCTGCCATTAGAGATGTTCTAATCTCAATATATCCTTGACCGTTTTTCTACCTTTTTTCCCTCTTTTTCTTGATCCTATCCTCATTCTTCTATTTTCTTTTCTTTCCTCCGCCCGTGTTTCTTCATGACGCAATTCGTATCTCTGCGTCTCTCTCCAGCAGTCCCTCTATCTCTTTATCTCTAACTTTTCACGCACAGCCCGTATGGTTGTTGGTTACAAATCACTCATATATGAACCATAACAATTGGATGTTTCTCTGTAGATTTAGATTCATTTTCTGATGACCTCTTTTGCCAAGCCTTTATAGAAAAAAGAGTGAAATTGGAAGAGAAAATAACGAGAAGACGTGCGAAAAGTGACTAGAAAATACACTTTTTTCTTCTTCAGAGAGACGTAGAGATAGAATTCTGATGAACACTTGATTCTTTGGGTTTTCTCTGGGTGGCCTAATGGATTTTTGGCTAT</canonical>
            <polymorphic>GTGTAGAACCTAAAAGAGGAGGAGAATTAGGAATTAATTAGCTGCTCCAAAAGAATTTTCAATTAAGAAAAATTGCCAATTTAGACTAGATAGACACTTCTAATTTCTCAATAGTGACGGATTAGTGGAATTTGTAAGACGAGTACCTTTTTTTTCTCAGAGAATTTATGGTCATTTTCAGATAGGTTGAACCCTAGATTCGGTCTCTTTTTAGCCATTTTCAGTCATTTTTAGAGACAAAGGAACCTAGAATTTTGCTTTCCAGGAGAAAACGTGACTTTTTGAAAGTTTTCTTCCTGGGGGAAACTCTAGCTCCGATTTCCCACGAGTTTAGTTGAATTTTGACCCATTTTCTGGCTCATATACAGGGCTAAAATTCGGCTGAATTTTGACCTATTTTAAGGCAAACTTTAAACTAGCTTTCGAGACTAGAATTTAGCTAAATTATGGCAAATTTTTGGGCTCATTTTCAGGGCTAAATTTAGCTAATCTTTAATCCKTTTTTAGGCTCTTTACCAGGTCTAAAATTCAGTTTCTGCCATTAGAGATGTTCTAATCTCAATATATCCTTGACCGTTTTTCTACCTTTTTTCCCTCTTTTTCTTGATCCTATCCTCATTCTTCTATTTTCTTTTCTTTCCTCCGCCCGTGTTTCTTCATGACGCAATTCGTATCTCTGCGTCTCTCTCCAGCAGTCCCTCTATCTCTTTATCTCTAACTTTTCACGCACAGCCCGTATGGTTGTTGGTTACAAATCACTCATATATGAACCATAACAATTGGATGTTTCTCTGTAGATTTAGATTCATTTTCTGATGACCTCTTTTGCCAAGCCTTTATAGAAAAAAGAGTGAAATTGGAAGAGAAAATAACGAGAAGACGTGCGAAAAGTGACTAGAAAATACACTTTTTTCTTCTTCAGAGAGACGTAGAGATAGAATTCTGATGAACACTTGATTCTTTGGGTTTTCTCTGGGTGGCCTAATGGATTTTTGGCTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCTNNNNNAGG</site>
                <isoschizomers>
                    <enzyme>BstENI</enzyme>
                    <enzyme>EcoNI</enzyme>
                    <enzyme>XagI</enzyme>
                </isoschizomers>
                <canonical_bands>498 489 13</canonical_bands>
                <polymorphic_bands>987 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAGTTTAGTTGAATTTTGACC</pcr_primer_p1>
		<pcr_primer_p2>GGTCAAGGATATATTGAGATTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGAGTTTAGTTGAATTTTGACCCATTTTCTGGCTCATATACAGGGCTAAAATTCGGCTGAATTTTGACCTATTTTAAGGCAAACTTTAAACTAGCTTTCGAGACTAGAATTTAGCTAAATTATGGCAAATTTTTGGGCTCATTTTCAGGGCTAAATTTAGCTAATCTTTAATCCTTTTTTAGGCTCTTTACCAGGTCTAAAATTCAGTTTCTGCCATTAGAGATGTTCTAATCTCAATATATCCTTGACC</canonical_amplicon>
		<polymorphic_amplicon>CGAGTTTAGTTGAATTTTGACCCATTTTCTGGCTCATATACAGGGCTAAAATTCGGCTGAATTTTGACCTATTTTAAGGCAAACTTTAAACTAGCTTTCGAGACTAGAATTTAGCTAAATTATGGCAAATTTTTGGGCTCATTTTCAGGGCTAAATTTAGCTAATCTTTAATCCKTTTTTAGGCTCTTTACCAGGTCTAAAATTCAGTTTCTGCCATTAGAGATGTTCTAATCTCAATATATCCTTGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27007</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>191206</contig_pos>
        <strand>+</strand>
        <context>ATCCTTGACC[G/T]tttttctacc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTCAGTTTCTGCCATTAGAGATGTTCTAATCTCAATATATCCTTGACC</left_flank>
        <right_flank>TTTTTCTACCTTTTTTCCCTCTTTTTCTTGATCCTATCCTCATTCTTCTA</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATTTAGACTAGATAGACACTTCTAATTTCTCAATAGTGACGGATTAGTGGAATTTGTAAGACGAGTACCTTTTTTTTCTCAGAGAATTTATGGTCATTTTCAGATAGGTTGAACCCTAGATTCGGTCTCTTTTTAGCCATTTTCAGTCATTTTTAGAGACAAAGGAACCTAGAATTTTGCTTTCCAGGAGAAAACGTGACTTTTTGAAAGTTTTCTTCCTGGGGGAAACTCTAGCTCCGATTTCCCACGAGTTTAGTTGAATTTTGACCCATTTTCTGGCTCATATACAGGGCTAAAATTCGGCTGAATTTTGACCTATTTTAAGGCAAACTTTAAACTAGCTTTCGAGACTAGAATTTAGCTAAATTATGGCAAATTTTTGGGCTCATTTTCAGGGCTAAATTTAGCTAATCTTTAATCCTTTTTTAGGCTCTTTACCAGGTCTAAAATTCAGTTTCTGCCATTAGAGATGTTCTAATCTCAATATATCCTTGACCGTTTTTCTACCTTTTTTCCCTCTTTTTCTTGATCCTATCCTCATTCTTCTATTTTCTTTTCTTTCCTCCGCCCGTGTTTCTTCATGACGCAATTCGTATCTCTGCGTCTCTCTCCAGCAGTCCCTCTATCTCTTTATCTCTAACTTTTCACGCACAGCCCGTATGGTTGTTGGTTACAAATCACTCATATATGAACCATAACAATTGGATGTTTCTCTGTAGATTTAGATTCATTTTCTGATGACCTCTTTTGCCAAGCCTTTATAGAAAAAAGAGTGAAATTGGAAGAGAAAATAACGAGAAGACGTGCGAAAAGTGACTAGAAAATACACTTTTTTCTTCTTCAGAGAGACGTAGAGATAGAATTCTGATGAACACTTGATTCTTTGGGTTTTCTCTGGGTGGCCTAATGGATTTTTGGCTATTTTAACGCTATTTTTGAACTAGATTTGATTGAAATTCTGTACTAATTACGAAATTACTGCTCAACTAGAGCTTGCC</canonical>
            <polymorphic>CAATTTAGACTAGATAGACACTTCTAATTTCTCAATAGTGACGGATTAGTGGAATTTGTAAGACGAGTACCTTTTTTTTCTCAGAGAATTTATGGTCATTTTCAGATAGGTTGAACCCTAGATTCGGTCTCTTTTTAGCCATTTTCAGTCATTTTTAGAGACAAAGGAACCTAGAATTTTGCTTTCCAGGAGAAAACGTGACTTTTTGAAAGTTTTCTTCCTGGGGGAAACTCTAGCTCCGATTTCCCACGAGTTTAGTTGAATTTTGACCCATTTTCTGGCTCATATACAGGGCTAAAATTCGGCTGAATTTTGACCTATTTTAAGGCAAACTTTAAACTAGCTTTCGAGACTAGAATTTAGCTAAATTATGGCAAATTTTTGGGCTCATTTTCAGGGCTAAATTTAGCTAATCTTTAATCCTTTTTTAGGCTCTTTACCAGGTCTAAAATTCAGTTTCTGCCATTAGAGATGTTCTAATCTCAATATATCCTTGACCKTTTTTCTACCTTTTTTCCCTCTTTTTCTTGATCCTATCCTCATTCTTCTATTTTCTTTTCTTTCCTCCGCCCGTGTTTCTTCATGACGCAATTCGTATCTCTGCGTCTCTCTCCAGCAGTCCCTCTATCTCTTTATCTCTAACTTTTCACGCACAGCCCGTATGGTTGTTGGTTACAAATCACTCATATATGAACCATAACAATTGGATGTTTCTCTGTAGATTTAGATTCATTTTCTGATGACCTCTTTTGCCAAGCCTTTATAGAAAAAAGAGTGAAATTGGAAGAGAAAATAACGAGAAGACGTGCGAAAAGTGACTAGAAAATACACTTTTTTCTTCTTCAGAGAGACGTAGAGATAGAATTCTGATGAACACTTGATTCTTTGGGTTTTCTCTGGGTGGCCTAATGGATTTTTGGCTATTTTAACGCTATTTTTGAACTAGATTTGATTGAAATTCTGTACTAATTACGAAATTACTGCTCAACTAGAGCTTGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAGGTCTAAAATTCAGTTTCT</pcr_primer_p1>
		<pcr_primer_p2>TATGAGTGATTTGTAACCAACAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCAGGTCTAAAATTCAGTTTCTGCCATTAGAGATGTTCTAATCTCAATATATCCTTGACCGTTTTTCTACCTTTTTTCCCTCTTTTTCTTGATCCTATCCTCATTCTTCTATTTTCTTTTCTTTCCTCCGCCCGTGTTTCTTCATGACGCAATTCGTATCTCTGCGTCTCTCTCCAGCAGTCCCTCTATCTCTTTATCTCTAACTTTTCACGCACAGCCCGTATGGTTGTTGGTTACAAATCACTCATA</canonical_amplicon>
		<polymorphic_amplicon>ACCAGGTCTAAAATTCAGTTTCTGCCATTAGAGATGTTCTAATCTCAATATATCCTTGACCKTTTTTCTACCTTTTTTCCCTCTTTTTCTTGATCCTATCCTCATTCTTCTATTTTCTTTTCTTTCCTCCGCCCGTGTTTCTTCATGACGCAATTCGTATCTCTGCGTCTCTCTCCAGCAGTCCCTCTATCTCTTTATCTCTAACTTTTCACGCACAGCCCGTATGGTTGTTGGTTACAAATCACTCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27008</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>226048</contig_pos>
        <strand>+</strand>
        <context>CATTTCGGTA[C/G]TAGTTTCATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTTTTACTGAGGCTTAGGAATTTTACTGAGGCTCGGTGAACATTTCGGTA</left_flank>
        <right_flank>TAGTTTCATATCACTACCTCAATTTTGAAAGCAGTTACAAGAGATCTAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGCAACGAACGACCATCAAGAGACCTCCGCCCATCGACATCAAATGTAATTCAACATCACTCCCTATCCACGTCTTCACAATCCACGTCATCTCTGTACGATTCGGCGACACCGGAGAACTTCCTTATCGTTGCTGATATCGATAACGCAACTGTGAAAGTATTGTCTTCTGAAGGCCTCGACGAAGTGACGTCACCATCTGAATGCGTTGTTGGCATGTTGGAGCAATTTGTTGGAATCTACGGAACGATGCCGTCGACTGCCGAGTTTTTGGTTGGAATTTTGGAAGATTCCCTGGCACATATTGTTGGGAAGAGTCTGACACTTGTCGAGTTGGTTCGCAGTGATCAATCGGTGAGTTTTTAGATTTTCCAGCGAAATTCCAGTCATTTTAGTGGAAAGATCAAGTTTCTAGCTTCATTTTGAAGCGAGTTATGACGATTTGAAGTTTTACTGAGGCTTAGGAATTTTACTGAGGCTCGGTGAACATTTCGGTACTAGTTTCATATCACTACCTCAATTTTGAAAGCAGTTACAAGAGATCTAAATCCACCTATGGGAAAATATGAAAAAAAAAGAAAACAATGATTTCTACCTGGAATTTTCAATTGGAAAGCTTTATTTCTTGTTAAAGAGGGACTCCGACCAAAAATTTTTATTGCATCAAAATGTGTTAAAAGTTGTCTGTTTTTCAAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATTCCCGAAAAACGGCGTTGAAAAAGAAAACAATTCAAAAAAGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGACAGTGGGCGCCTTTCCTATGTGGCAATTTTTCCTGATTTTTTTCAATTTCATGTCCGGAAGGTAAAAAACGTAAAAAACCACTGTCGGCGACTTGAAAAAAAGGCTGTCAGGTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCACCATTTTTTGAATTTTCTTCCT</canonical>
            <polymorphic>AATGCAACGAACGACCATCAAGAGACCTCCGCCCATCGACATCAAATGTAATTCAACATCACTCCCTATCCACGTCTTCACAATCCACGTCATCTCTGTACGATTCGGCGACACCGGAGAACTTCCTTATCGTTGCTGATATCGATAACGCAACTGTGAAAGTATTGTCTTCTGAAGGCCTCGACGAAGTGACGTCACCATCTGAATGCGTTGTTGGCATGTTGGAGCAATTTGTTGGAATCTACGGAACGATGCCGTCGACTGCCGAGTTTTTGGTTGGAATTTTGGAAGATTCCCTGGCACATATTGTTGGGAAGAGTCTGACACTTGTCGAGTTGGTTCGCAGTGATCAATCGGTGAGTTTTTAGATTTTCCAGCGAAATTCCAGTCATTTTAGTGGAAAGATCAAGTTTCTAGCTTCATTTTGAAGCGAGTTATGACGATTTGAAGTTTTACTGAGGCTTAGGAATTTTACTGAGGCTCGGTGAACATTTCGGTASTAGTTTCATATCACTACCTCAATTTTGAAAGCAGTTACAAGAGATCTAAATCCACCTATGGGAAAATATGAAAAAAAAAGAAAACAATGATTTCTACCTGGAATTTTCAATTGGAAAGCTTTATTTCTTGTTAAAGAGGGACTCCGACCAAAAATTTTTATTGCATCAAAATGTGTTAAAAGTTGTCTGTTTTTCAAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATTCCCGAAAAACGGCGTTGAAAAAGAAAACAATTCAAAAAAGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGACAGTGGGCGCCTTTCCTATGTGGCAATTTTTCCTGATTTTTTTCAATTTCATGTCCGGAAGGTAAAAAACGTAAAAAACCACTGTCGGCGACTTGAAAAAAAGGCTGTCAGGTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCACCATTTTTTGAATTTTCTTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 399 99</canonical_bands>
                <polymorphic_bands>901 99</polymorphic_bands>
            </assay>
            <assay>
                <site>ACTAGT</site>
                <isoschizomers>
                    <enzyme>AhlI</enzyme>
                    <enzyme>BcuI</enzyme>
                    <enzyme>SpeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>414 309 132 86 59</canonical_bands>
                <polymorphic_bands>414 395 132 59</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCGGTGAGTTTTTAGATTTTC</pcr_primer_p1>
		<pcr_primer_p2>AATTCCAGGTAGAAATCATTGTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AATCGGTGAGTTTTTAGATTTTCCAGCGAAATTCCAGTCATTTTAGTGGAAAGATCAAGTTTCTAGCTTCATTTTGAAGCGAGTTATGACGATTTGAAGTTTTACTGAGGCTTAGGAATTTTACTGAGGCTCGGTGAACATTTCGGTACTAGTTTCATATCACTACCTCAATTTTGAAAGCAGTTACAAGAGATCTAAATCCACCTATGGGAAAATATGAAAAAAAAAGAAAACAATGATTTCTACCTGGAATT</canonical_amplicon>
		<polymorphic_amplicon>AATCGGTGAGTTTTTAGATTTTCCAGCGAAATTCCAGTCATTTTAGTGGAAAGATCAAGTTTCTAGCTTCATTTTGAAGCGAGTTATGACGATTTGAAGTTTTACTGAGGCTTAGGAATTTTACTGAGGCTCGGTGAACATTTCGGTASTAGTTTCATATCACTACCTCAATTTTGAAAGCAGTTACAAGAGATCTAAATCCACCTATGGGAAAATATGAAAAAAAAAGAAAACAATGATTTCTACCTGGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27009</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>233382</contig_pos>
        <strand>+</strand>
        <context>CAGTAAAACT[A/G]AAAACGCCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTAATCAAGGCTTATGATTCTCTAGAATTTTCTAAGCCTCAGTAAAACT</left_flank>
        <right_flank>AAAACGCCCATAACTTTCTTCAAAATTAACTTCTGAGTCGAGTTATGGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAGTTAGGTCATGATTATACTCATTTTGAAGGTCTCGAAAAGCCAAAACCATTCAGGTGAAGAAAGTTATGGCGATTTCTAGTTTTACTGAGGCTTAGAGAATCCTAAGCCTCAGTAAAAAACTAAAATTGCCATAGCTTTATTCAAATTTGGCCTAGAAACTTGGTTTTTGTACTAAAATGATTGGAAAAAGCTGGAAAACAATAAAATCAAGAATTTCAAGCCCTTACCATCCTCATAAGTGTCAAAGTGTGCCACCGCTGTCACTTTGCCAGTTTTCGGCTCCAACATCGCCAGATTCAAGCCACGTCCAGCGTTGTTGAGGTCCCTGAAGGTTTAAAATTTAGAAAAATCCGGAAATTTTCGAAATTCTGGTGAATTTGGTTTAACAATCAAGTTTCTATGTCAATTCTGAAGAAAGTTATGGGCGTTTGGGGCTTATGATTCTCTAATCAAGGCTTATGATTCTCTAGAATTTTCTAAGCCTCAGTAAAACTGAAAACGCCCATAACTTTCTTCAAAATTAACTTCTGAGTCGAGTTATGGCTCGTTTTGTTTTGAGGCTTNNNNNNNNNNTCCCACTAGGCCATCCGAGCAAATTTTGCGAAAAATCAGATTTTTGGTTGAAATTGAGTTTTTTGAGGGTTTCCCTCAGAACACTTTTGGCTATAACTCGCTTCAAAATTGACCTAGAAACTTGATTTTTGAAACAAAATGTGTGGAAACATCTGGAGATCATGTTGGTCACTTACTTATCAAAAAGCAACCGTTCTCCAACGCACATCTTCGGATGATCATCCTTGTGCTCCCCAGAGAAAAAGTGCACAGCAATGGAGTCATCCTCATTGCACCCCTTAGTCATTCCACAATTTTTCCACTTCTCCCCATACTCCACCGTCTCCTTTTTCTGCAATAAATCCGCTTCAAACGCTCCCAACTCCGCTAGTTTCGTCTCATCGGCTCTATGAACAGGCGGTCCATCGATTTTGAGCTCAACC</canonical>
            <polymorphic>TGGAGTTAGGTCATGATTATACTCATTTTGAAGGTCTCGAAAAGCCAAAACCATTCAGGTGAAGAAAGTTATGGCGATTTCTAGTTTTACTGAGGCTTAGAGAATCCTAAGCCTCAGTAAAAAACTAAAATTGCCATAGCTTTATTCAAATTTGGCCTAGAAACTTGGTTTTTGTACTAAAATGATTGGAAAAAGCTGGAAAACAATAAAATCAAGAATTTCAAGCCCTTACCATCCTCATAAGTGTCAAAGTGTGCCACCGCTGTCACTTTGCCAGTTTTCGGCTCCAACATCGCCAGATTCAAGCCACGTCCAGCGTTGTTGAGGTCCCTGAAGGTTTAAAATTTAGAAAAATCCGGAAATTTTCGAAATTCTGGTGAATTTGGTTTAACAATCAAGTTTCTATGTCAATTCTGAAGAAAGTTATGGGCGTTTGGGGCTTATGATTCTCTAATCAAGGCTTATGATTCTCTAGAATTTTCTAAGCCTCAGTAAAACTRAAAACGCCCATAACTTTCTTCAAAATTAACTTCTGAGTCGAGTTATGGCTCGTTTTGTTTTGAGGCTTNNNNNNNNNNTCCCACTAGGCCATCCGAGCAAATTTTGCGAAAAATCAGATTTTTGGTTGAAATTGAGTTTTTTGAGGGTTTCCCTCAGAACACTTTTGGCTATAACTCGCTTCAAAATTGACCTAGAAACTTGATTTTTGAAACAAAATGTGTGGAAACATCTGGAGATCATGTTGGTCACTTACTTATCAAAAAGCAACCGTTCTCCAACGCACATCTTCGGATGATCATCCTTGTGCTCCCCAGAGAAAAAGTGCACAGCAATGGAGTCATCCTCATTGCACCCCTTAGTCATTCCACAATTTTTCCACTTCTCCCCATACTCCACCGTCTCCTTTTTCTGCAATAAATCCGCTTCAAACGCTCCCAACTCCGCTAGTTTCGTCTCATCGGCTCTATGAACAGGCGGTCCATCGATTTTGAGCTCAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGTCCCTGAAGGTTTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAACAAAACGAGCCATAACT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>AGGTCCCTGAAGGTTTAAAATTTAGAAAAATCCGGAAATTTTCGAAATTCTGGTGAATTTGGTTTAACAATCAAGTTTCTATGTCAATTCTGAAGAAAGTTATGGGCGTTTGGGGCTTATGATTCTCTAATCAAGGCTTATGATTCTCTAGAATTTTCTAAGCCTCAGTAAAACTGAAAACGCCCATAACTTTCTTCAAAATTAACTTCTGAGTCGAGTTATGGCTCGTTTTGTTTT</canonical_amplicon>
		<polymorphic_amplicon>AGGTCCCTGAAGGTTTAAAATTTAGAAAAATCCGGAAATTTTCGAAATTCTGGTGAATTTGGTTTAACAATCAAGTTTCTATGTCAATTCTGAAGAAAGTTATGGGCGTTTGGGGCTTATGATTCTCTAATCAAGGCTTATGATTCTCTAGAATTTTCTAAGCCTCAGTAAAACTRAAAACGCCCATAACTTTCTTCAAAATTAACTTCTGAGTCGAGTTATGGCTCGTTTTGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27010</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>321709</contig_pos>
        <strand></strand>
        <context>aaatgttcta[A/T]gcctcagtaw</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTA</left_flank>
        <right_flank>GCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTAGGCCTCAGTAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTATGAGAGGGAGAATGCAATGGAGAAAGACGCTACTATCAGGGTAGGGAAAGTTTTGGAATTTCACTGAAAAAGGCTAGACAAAATCTTCAAAAACGCTAAAATGTTCTAACCTAGTTTTTACCTAAAAACTAGATTCTCTAGAAAATTCGGGTCATTTTAGTACAAAAATCATGTCTCTAGACCGAATTTGCGTCTAGTTACGGCTTGTGCAAGTTGAAGTTTTCTAAGCCTCAGTAAATTTTTTTTGAACTTCTCCAAAAAAACCAAAATACAGTTTTTTCACTTCTTAACAAGATTCTCCAGAAATTTTGGGTTTTTTTTGGTATAAAAACCATGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGTCCGAATGTCGTTCCTGGGTGGATTTCTAGTGGGCGGAGCCACGGGATACGCTCAAGCCCGTCACGCCTACGAAACCAACAACGTCGGTAGGAAATATTTGAGTCCCAGCGATGCGGTAAAACGAAAAATCGATTATGCGATTGTGAGATTTGCGAAAGGAGGATTTGGAACGGGATTCAAGTGTGCACTCATAACTGGATCCATTGTGTAAGATCTCGGAATCTCC</canonical>
            <polymorphic>ATTTATGAGAGGGAGAATGCAATGGAGAAAGACGCTACTATCAGGGTAGGGAAAGTTTTGGAATTTCACTGAAAAAGGCTAGACAAAATCTTCAAAAACGCTAAAATGTTCTAACCTAGTTTTTACCTAAAAACTAGATTCTCTAGAAAATTCGGGTCATTTTAGTACAAAAATCATGTCTCTAGACCGAATTTGCGTCTAGTTACGGCTTGTGCAAGTTGAAGTTTTCTAAGCCTCAGTAAATTTTTTTTGAACTTCTCCAAAAAAACCAAAATACAGTTTTTTCACTTCTTAACAAGATTCTCCAGAAATTTTGGGTTTTTTTTGGTATAAAAACCATGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAWGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGTCCGAATGTCGTTCCTGGGTGGATTTCTAGTGGGCGGAGCCACGGGATACGCTCAAGCCCGTCACGCCTACGAAACCAACAACGTCGGTAGGAAATATTTGAGTCCCAGCGATGCGGTAAAACGAAAAATCGATTATGCGATTGTGAGATTTGCGAAAGGAGGATTTGGAACGGGATTCAAGTGTGCACTCATAACTGGATCCATTGTGTAAGATCTCGGAATCTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>275 229 156 22 21 21 20 20 15 15 15 15 15 14 14 14 14 14 13 6 6 6 6 6 6 6 6 6 6 6 6 6</canonical_bands>
                <polymorphic_bands>275 229 156 22 21 21 21 20 20 15 15 15 15 14 14 14 14 14 13 6 6 6 6 6 6 6 6 6 6 6 6</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>170 130 115 89 78 42 41 35 25 22 21 21 21 21 20 20 20 20 20 20 19 18 12</canonical_bands>
                <polymorphic_bands>170 130 115 89 78 62 41 35 25 22 21 21 21 21 20 20 20 20 20 19 18 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTATGTAGCTCTATTTTAAGCTGAT</pcr_primer_p1>
		<pcr_primer_p2>ACGACCTGGAATTTTCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>435</pcr_amplicon_size>
		<canonical_amplicon>TGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGT</canonical_amplicon>
		<polymorphic_amplicon>TGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAWGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27011</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>321719</contig_pos>
        <strand></strand>
        <context>wgcctcagta[T/A]aaattcctta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTA</left_flank>
        <right_flank>AAATTCCTTAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGAGAATGCAATGGAGAAAGACGCTACTATCAGGGTAGGGAAAGTTTTGGAATTTCACTGAAAAAGGCTAGACAAAATCTTCAAAAACGCTAAAATGTTCTAACCTAGTTTTTACCTAAAAACTAGATTCTCTAGAAAATTCGGGTCATTTTAGTACAAAAATCATGTCTCTAGACCGAATTTGCGTCTAGTTACGGCTTGTGCAAGTTGAAGTTTTCTAAGCCTCAGTAAATTTTTTTTGAACTTCTCCAAAAAAACCAAAATACAGTTTTTTCACTTCTTAACAAGATTCTCCAGAAATTTTGGGTTTTTTTTGGTATAAAAACCATGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGTCCGAATGTCGTTCCTGGGTGGATTTCTAGTGGGCGGAGCCACGGGATACGCTCAAGCCCGTCACGCCTACGAAACCAACAACGTCGGTAGGAAATATTTGAGTCCCAGCGATGCGGTAAAACGAAAAATCGATTATGCGATTGTGAGATTTGCGAAAGGAGGATTTGGAACGGGATTCAAGTGTGCACTCATAACTGGATCCATTGTGTAAGATCTCGGAATCTCCAATCTTACGA</canonical>
            <polymorphic>GGGAGAATGCAATGGAGAAAGACGCTACTATCAGGGTAGGGAAAGTTTTGGAATTTCACTGAAAAAGGCTAGACAAAATCTTCAAAAACGCTAAAATGTTCTAACCTAGTTTTTACCTAAAAACTAGATTCTCTAGAAAATTCGGGTCATTTTAGTACAAAAATCATGTCTCTAGACCGAATTTGCGTCTAGTTACGGCTTGTGCAAGTTGAAGTTTTCTAAGCCTCAGTAAATTTTTTTTGAACTTCTCCAAAAAAACCAAAATACAGTTTTTTCACTTCTTAACAAGATTCTCCAGAAATTTTGGGTTTTTTTTGGTATAAAAACCATGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTAWAAATTCCTTAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGTCCGAATGTCGTTCCTGGGTGGATTTCTAGTGGGCGGAGCCACGGGATACGCTCAAGCCCGTCACGCCTACGAAACCAACAACGTCGGTAGGAAATATTTGAGTCCCAGCGATGCGGTAAAACGAAAAATCGATTATGCGATTGTGAGATTTGCGAAAGGAGGATTTGGAACGGGATTCAAGTGTGCACTCATAACTGGATCCATTGTGTAAGATCTCGGAATCTCCAATCTTACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATGTAGCTCTATTTTAAGCTGAT</pcr_primer_p1>
		<pcr_primer_p2>ACGACCTGGAATTTTCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>435</pcr_amplicon_size>
		<canonical_amplicon>TGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGT</canonical_amplicon>
		<polymorphic_amplicon>TGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTAWAAATTCCTTAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27012</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>321739</contig_pos>
        <strand></strand>
        <context>agcctcagta[A/T]aaactcctwr</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTA</left_flank>
        <right_flank>AAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGCTACTATCAGGGTAGGGAAAGTTTTGGAATTTCACTGAAAAAGGCTAGACAAAATCTTCAAAAACGCTAAAATGTTCTAACCTAGTTTTTACCTAAAAACTAGATTCTCTAGAAAATTCGGGTCATTTTAGTACAAAAATCATGTCTCTAGACCGAATTTGCGTCTAGTTACGGCTTGTGCAAGTTGAAGTTTTCTAAGCCTCAGTAAATTTTTTTTGAACTTCTCCAAAAAAACCAAAATACAGTTTTTTCACTTCTTAACAAGATTCTCCAGAAATTTTGGGTTTTTTTTGGTATAAAAACCATGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGTCCGAATGTCGTTCCTGGGTGGATTTCTAGTGGGCGGAGCCACGGGATACGCTCAAGCCCGTCACGCCTACGAAACCAACAACGTCGGTAGGAAATATTTGAGTCCCAGCGATGCGGTAAAACGAAAAATCGATTATGCGATTGTGAGATTTGCGAAAGGAGGATTTGGAACGGGATTCAAGTGTGCACTCATAACTGGATCCATTGTGTAAGATCTCGGAATCTCCAATCTTACGATTTTTTGGGATTTTCAGATT</canonical>
            <polymorphic>GACGCTACTATCAGGGTAGGGAAAGTTTTGGAATTTCACTGAAAAAGGCTAGACAAAATCTTCAAAAACGCTAAAATGTTCTAACCTAGTTTTTACCTAAAAACTAGATTCTCTAGAAAATTCGGGTCATTTTAGTACAAAAATCATGTCTCTAGACCGAATTTGCGTCTAGTTACGGCTTGTGCAAGTTGAAGTTTTCTAAGCCTCAGTAAATTTTTTTTGAACTTCTCCAAAAAAACCAAAATACAGTTTTTTCACTTCTTAACAAGATTCTCCAGAAATTTTGGGTTTTTTTTGGTATAAAAACCATGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAWAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGTCCGAATGTCGTTCCTGGGTGGATTTCTAGTGGGCGGAGCCACGGGATACGCTCAAGCCCGTCACGCCTACGAAACCAACAACGTCGGTAGGAAATATTTGAGTCCCAGCGATGCGGTAAAACGAAAAATCGATTATGCGATTGTGAGATTTGCGAAAGGAGGATTTGGAACGGGATTCAAGTGTGCACTCATAACTGGATCCATTGTGTAAGATCTCGGAATCTCCAATCTTACGATTTTTTGGGATTTTCAGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATGTAGCTCTATTTTAAGCTGAT</pcr_primer_p1>
		<pcr_primer_p2>ACGACCTGGAATTTTCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>435</pcr_amplicon_size>
		<canonical_amplicon>TGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGT</canonical_amplicon>
		<polymorphic_amplicon>TGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAWAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27013</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>321748</contig_pos>
        <strand></strand>
        <context>awaaactcct[A/T]rgcctcagta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCT</left_flank>
        <right_flank>GGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAGGGTAGGGAAAGTTTTGGAATTTCACTGAAAAAGGCTAGACAAAATCTTCAAAAACGCTAAAATGTTCTAACCTAGTTTTTACCTAAAAACTAGATTCTCTAGAAAATTCGGGTCATTTTAGTACAAAAATCATGTCTCTAGACCGAATTTGCGTCTAGTTACGGCTTGTGCAAGTTGAAGTTTTCTAAGCCTCAGTAAATTTTTTTTGAACTTCTCCAAAAAAACCAAAATACAGTTTTTTCACTTCTTAACAAGATTCTCCAGAAATTTTGGGTTTTTTTTGGTATAAAAACCATGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGTCCGAATGTCGTTCCTGGGTGGATTTCTAGTGGGCGGAGCCACGGGATACGCTCAAGCCCGTCACGCCTACGAAACCAACAACGTCGGTAGGAAATATTTGAGTCCCAGCGATGCGGTAAAACGAAAAATCGATTATGCGATTGTGAGATTTGCGAAAGGAGGATTTGGAACGGGATTCAAGTGTGCACTCATAACTGGATCCATTGTGTAAGATCTCGGAATCTCCAATCTTACGATTTTTTGGGATTTTCAGATTCCTGACGAC</canonical>
            <polymorphic>ATCAGGGTAGGGAAAGTTTTGGAATTTCACTGAAAAAGGCTAGACAAAATCTTCAAAAACGCTAAAATGTTCTAACCTAGTTTTTACCTAAAAACTAGATTCTCTAGAAAATTCGGGTCATTTTAGTACAAAAATCATGTCTCTAGACCGAATTTGCGTCTAGTTACGGCTTGTGCAAGTTGAAGTTTTCTAAGCCTCAGTAAATTTTTTTTGAACTTCTCCAAAAAAACCAAAATACAGTTTTTTCACTTCTTAACAAGATTCTCCAGAAATTTTGGGTTTTTTTTGGTATAAAAACCATGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTWGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGTCCGAATGTCGTTCCTGGGTGGATTTCTAGTGGGCGGAGCCACGGGATACGCTCAAGCCCGTCACGCCTACGAAACCAACAACGTCGGTAGGAAATATTTGAGTCCCAGCGATGCGGTAAAACGAAAAATCGATTATGCGATTGTGAGATTTGCGAAAGGAGGATTTGGAACGGGATTCAAGTGTGCACTCATAACTGGATCCATTGTGTAAGATCTCGGAATCTCCAATCTTACGATTTTTTGGGATTTTCAGATTCCTGACGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGGCCT</site>
                <isoschizomers>
                    <enzyme>AatI</enzyme>
                    <enzyme>Eco147I</enzyme>
                    <enzyme>PceI</enzyme>
                    <enzyme>SseBI</enzyme>
                    <enzyme>StuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 376 122</canonical_bands>
                <polymorphic_bands>624 376</polymorphic_bands>
            </assay>
            <assay>
                <site>CCTAGG</site>
                <isoschizomers>
                    <enzyme>AvrII</enzyme>
                    <enzyme>BlnI</enzyme>
                    <enzyme>BspA2I</enzyme>
                    <enzyme>XmaJI</enzyme>
                </isoschizomers>
                <canonical_bands>497 381 122</canonical_bands>
                <polymorphic_bands>619 381</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>338 239 141 122 40 39 37 18 17 9</canonical_bands>
                <polymorphic_bands>460 239 141 40 39 37 18 17 9</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>497 381 122</canonical_bands>
                <polymorphic_bands>619 381</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 376 122</canonical_bands>
                <polymorphic_bands>624 376</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTATGTAGCTCTATTTTAAGCTGAT</pcr_primer_p1>
		<pcr_primer_p2>ACGACCTGGAATTTTCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>435</pcr_amplicon_size>
		<canonical_amplicon>TGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGT</canonical_amplicon>
		<polymorphic_amplicon>TGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTWGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27014</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>321749</contig_pos>
        <strand></strand>
        <context>waaactcctw[G/A]gcctcagtaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTA</left_flank>
        <right_flank>GCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGGGTAGGGAAAGTTTTGGAATTTCACTGAAAAAGGCTAGACAAAATCTTCAAAAACGCTAAAATGTTCTAACCTAGTTTTTACCTAAAAACTAGATTCTCTAGAAAATTCGGGTCATTTTAGTACAAAAATCATGTCTCTAGACCGAATTTGCGTCTAGTTACGGCTTGTGCAAGTTGAAGTTTTCTAAGCCTCAGTAAATTTTTTTTGAACTTCTCCAAAAAAACCAAAATACAGTTTTTTCACTTCTTAACAAGATTCTCCAGAAATTTTGGGTTTTTTTTGGTATAAAAACCATGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGTCCGAATGTCGTTCCTGGGTGGATTTCTAGTGGGCGGAGCCACGGGATACGCTCAAGCCCGTCACGCCTACGAAACCAACAACGTCGGTAGGAAATATTTGAGTCCCAGCGATGCGGTAAAACGAAAAATCGATTATGCGATTGTGAGATTTGCGAAAGGAGGATTTGGAACGGGATTCAAGTGTGCACTCATAACTGGATCCATTGTGTAAGATCTCGGAATCTCCAATCTTACGATTTTTTGGGATTTTCAGATTCCTGACGACC</canonical>
            <polymorphic>TCAGGGTAGGGAAAGTTTTGGAATTTCACTGAAAAAGGCTAGACAAAATCTTCAAAAACGCTAAAATGTTCTAACCTAGTTTTTACCTAAAAACTAGATTCTCTAGAAAATTCGGGTCATTTTAGTACAAAAATCATGTCTCTAGACCGAATTTGCGTCTAGTTACGGCTTGTGCAAGTTGAAGTTTTCTAAGCCTCAGTAAATTTTTTTTGAACTTCTCCAAAAAAACCAAAATACAGTTTTTTCACTTCTTAACAAGATTCTCCAGAAATTTTGGGTTTTTTTTGGTATAAAAACCATGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTARGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGTCCGAATGTCGTTCCTGGGTGGATTTCTAGTGGGCGGAGCCACGGGATACGCTCAAGCCCGTCACGCCTACGAAACCAACAACGTCGGTAGGAAATATTTGAGTCCCAGCGATGCGGTAAAACGAAAAATCGATTATGCGATTGTGAGATTTGCGAAAGGAGGATTTGGAACGGGATTCAAGTGTGCACTCATAACTGGATCCATTGTGTAAGATCTCGGAATCTCCAATCTTACGATTTTTTGGGATTTTCAGATTCCTGACGACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGGCCT</site>
                <isoschizomers>
                    <enzyme>AatI</enzyme>
                    <enzyme>Eco147I</enzyme>
                    <enzyme>PceI</enzyme>
                    <enzyme>SseBI</enzyme>
                    <enzyme>StuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 377 122</canonical_bands>
                <polymorphic_bands>623 377</polymorphic_bands>
            </assay>
            <assay>
                <site>CCTAGG</site>
                <isoschizomers>
                    <enzyme>AvrII</enzyme>
                    <enzyme>BlnI</enzyme>
                    <enzyme>BspA2I</enzyme>
                    <enzyme>XmaJI</enzyme>
                </isoschizomers>
                <canonical_bands>496 382 122</canonical_bands>
                <polymorphic_bands>618 382</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>338 240 141 122 39 39 37 18 17 9</canonical_bands>
                <polymorphic_bands>460 240 141 39 39 37 18 17 9</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>496 227 129 122 26</canonical_bands>
                <polymorphic_bands>618 227 129 26</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 377 122</canonical_bands>
                <polymorphic_bands>623 377</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>496 382 122</canonical_bands>
                <polymorphic_bands>618 382</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>210 130 115 89 42 41 38 35 25 22 21 21 21 21 20 20 20 20 20 20 19 18 12</canonical_bands>
                <polymorphic_bands>210 130 115 89 42 41 41 38 35 25 22 21 21 21 20 20 20 20 20 19 18 12</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 377 122</canonical_bands>
                <polymorphic_bands>623 377</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTATGTAGCTCTATTTTAAGCTGAT</pcr_primer_p1>
		<pcr_primer_p2>ACGACCTGGAATTTTCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>435</pcr_amplicon_size>
		<canonical_amplicon>TGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGT</canonical_amplicon>
		<polymorphic_amplicon>TGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTARGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27015</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>321805</contig_pos>
        <strand></strand>
        <context>cagtaaaaat[T/C]yctwagcctc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAAT</left_flank>
        <right_flank>CCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACGCTAAAATGTTCTAACCTAGTTTTTACCTAAAAACTAGATTCTCTAGAAAATTCGGGTCATTTTAGTACAAAAATCATGTCTCTAGACCGAATTTGCGTCTAGTTACGGCTTGTGCAAGTTGAAGTTTTCTAAGCCTCAGTAAATTTTTTTTGAACTTCTCCAAAAAAACCAAAATACAGTTTTTTCACTTCTTAACAAGATTCTCCAGAAATTTTGGGTTTTTTTTGGTATAAAAACCATGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGTCCGAATGTCGTTCCTGGGTGGATTTCTAGTGGGCGGAGCCACGGGATACGCTCAAGCCCGTCACGCCTACGAAACCAACAACGTCGGTAGGAAATATTTGAGTCCCAGCGATGCGGTAAAACGAAAAATCGATTATGCGATTGTGAGATTTGCGAAAGGAGGATTTGGAACGGGATTCAAGTGTGCACTCATAACTGGATCCATTGTGTAAGATCTCGGAATCTCCAATCTTACGATTTTTTGGGATTTTCAGATTCCTGACGACCCATGTGACGGCCTACAGAGACAAATTTTCGTCATGGTACTTCCCGGCGATTTCAGG</canonical>
            <polymorphic>AACGCTAAAATGTTCTAACCTAGTTTTTACCTAAAAACTAGATTCTCTAGAAAATTCGGGTCATTTTAGTACAAAAATCATGTCTCTAGACCGAATTTGCGTCTAGTTACGGCTTGTGCAAGTTGAAGTTTTCTAAGCCTCAGTAAATTTTTTTTGAACTTCTCCAAAAAAACCAAAATACAGTTTTTTCACTTCTTAACAAGATTCTCCAGAAATTTTGGGTTTTTTTTGGTATAAAAACCATGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATYCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGTCCGAATGTCGTTCCTGGGTGGATTTCTAGTGGGCGGAGCCACGGGATACGCTCAAGCCCGTCACGCCTACGAAACCAACAACGTCGGTAGGAAATATTTGAGTCCCAGCGATGCGGTAAAACGAAAAATCGATTATGCGATTGTGAGATTTGCGAAAGGAGGATTTGGAACGGGATTCAAGTGTGCACTCATAACTGGATCCATTGTGTAAGATCTCGGAATCTCCAATCTTACGATTTTTTGGGATTTTCAGATTCCTGACGACCCATGTGACGGCCTACAGAGACAAATTTTCGTCATGGTACTTCCCGGCGATTTCAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>301 105 81 76 68 62 52 52 41 41 34 23 22 21 21</canonical_bands>
                <polymorphic_bands>301 122 105 76 68 62 52 52 41 34 23 22 21 21</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>301 105 81 76 68 62 52 52 41 41 34 23 22 21 21</canonical_bands>
                <polymorphic_bands>301 122 105 76 68 62 52 52 41 34 23 22 21 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTATGTAGCTCTATTTTAAGCTGAT</pcr_primer_p1>
		<pcr_primer_p2>ACGACCTGGAATTTTCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>435</pcr_amplicon_size>
		<canonical_amplicon>TGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGT</canonical_amplicon>
		<polymorphic_amplicon>TGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATYCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27016</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>321806</contig_pos>
        <strand></strand>
        <context>agtaaaaaty[C/T]ctwagcctca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATT</left_flank>
        <right_flank>CTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGCTAAAATGTTCTAACCTAGTTTTTACCTAAAAACTAGATTCTCTAGAAAATTCGGGTCATTTTAGTACAAAAATCATGTCTCTAGACCGAATTTGCGTCTAGTTACGGCTTGTGCAAGTTGAAGTTTTCTAAGCCTCAGTAAATTTTTTTTGAACTTCTCCAAAAAAACCAAAATACAGTTTTTTCACTTCTTAACAAGATTCTCCAGAAATTTTGGGTTTTTTTTGGTATAAAAACCATGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGTCCGAATGTCGTTCCTGGGTGGATTTCTAGTGGGCGGAGCCACGGGATACGCTCAAGCCCGTCACGCCTACGAAACCAACAACGTCGGTAGGAAATATTTGAGTCCCAGCGATGCGGTAAAACGAAAAATCGATTATGCGATTGTGAGATTTGCGAAAGGAGGATTTGGAACGGGATTCAAGTGTGCACTCATAACTGGATCCATTGTGTAAGATCTCGGAATCTCCAATCTTACGATTTTTTGGGATTTTCAGATTCCTGACGACCCATGTGACGGCCTACAGAGACAAATTTTCGTCATGGTACTTCCCGGCGATTTCAGGT</canonical>
            <polymorphic>ACGCTAAAATGTTCTAACCTAGTTTTTACCTAAAAACTAGATTCTCTAGAAAATTCGGGTCATTTTAGTACAAAAATCATGTCTCTAGACCGAATTTGCGTCTAGTTACGGCTTGTGCAAGTTGAAGTTTTCTAAGCCTCAGTAAATTTTTTTTGAACTTCTCCAAAAAAACCAAAATACAGTTTTTTCACTTCTTAACAAGATTCTCCAGAAATTTTGGGTTTTTTTTGGTATAAAAACCATGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTYCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGTCCGAATGTCGTTCCTGGGTGGATTTCTAGTGGGCGGAGCCACGGGATACGCTCAAGCCCGTCACGCCTACGAAACCAACAACGTCGGTAGGAAATATTTGAGTCCCAGCGATGCGGTAAAACGAAAAATCGATTATGCGATTGTGAGATTTGCGAAAGGAGGATTTGGAACGGGATTCAAGTGTGCACTCATAACTGGATCCATTGTGTAAGATCTCGGAATCTCCAATCTTACGATTTTTTGGGATTTTCAGATTCCTGACGACCCATGTGACGGCCTACAGAGACAAATTTTCGTCATGGTACTTCCCGGCGATTTCAGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>301 105 81 76 68 62 52 51 41 41 35 23 22 21 21</canonical_bands>
                <polymorphic_bands>301 122 105 76 68 62 52 51 41 35 23 22 21 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTATGTAGCTCTATTTTAAGCTGAT</pcr_primer_p1>
		<pcr_primer_p2>ACGACCTGGAATTTTCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>435</pcr_amplicon_size>
		<canonical_amplicon>TGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGT</canonical_amplicon>
		<polymorphic_amplicon>TGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTYCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27017</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>321809</contig_pos>
        <strand></strand>
        <context>aaaaatyyct[T/A]agcctcagta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCT</left_flank>
        <right_flank>AGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAAAATGTTCTAACCTAGTTTTTACCTAAAAACTAGATTCTCTAGAAAATTCGGGTCATTTTAGTACAAAAATCATGTCTCTAGACCGAATTTGCGTCTAGTTACGGCTTGTGCAAGTTGAAGTTTTCTAAGCCTCAGTAAATTTTTTTTGAACTTCTCCAAAAAAACCAAAATACAGTTTTTTCACTTCTTAACAAGATTCTCCAGAAATTTTGGGTTTTTTTTGGTATAAAAACCATGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGTCCGAATGTCGTTCCTGGGTGGATTTCTAGTGGGCGGAGCCACGGGATACGCTCAAGCCCGTCACGCCTACGAAACCAACAACGTCGGTAGGAAATATTTGAGTCCCAGCGATGCGGTAAAACGAAAAATCGATTATGCGATTGTGAGATTTGCGAAAGGAGGATTTGGAACGGGATTCAAGTGTGCACTCATAACTGGATCCATTGTGTAAGATCTCGGAATCTCCAATCTTACGATTTTTTGGGATTTTCAGATTCCTGACGACCCATGTGACGGCCTACAGAGACAAATTTTCGTCATGGTACTTCCCGGCGATTTCAGGTGTG</canonical>
            <polymorphic>CTAAAATGTTCTAACCTAGTTTTTACCTAAAAACTAGATTCTCTAGAAAATTCGGGTCATTTTAGTACAAAAATCATGTCTCTAGACCGAATTTGCGTCTAGTTACGGCTTGTGCAAGTTGAAGTTTTCTAAGCCTCAGTAAATTTTTTTTGAACTTCTCCAAAAAAACCAAAATACAGTTTTTTCACTTCTTAACAAGATTCTCCAGAAATTTTGGGTTTTTTTTGGTATAAAAACCATGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTWAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGTCCGAATGTCGTTCCTGGGTGGATTTCTAGTGGGCGGAGCCACGGGATACGCTCAAGCCCGTCACGCCTACGAAACCAACAACGTCGGTAGGAAATATTTGAGTCCCAGCGATGCGGTAAAACGAAAAATCGATTATGCGATTGTGAGATTTGCGAAAGGAGGATTTGGAACGGGATTCAAGTGTGCACTCATAACTGGATCCATTGTGTAAGATCTCGGAATCTCCAATCTTACGATTTTTTGGGATTTTCAGATTCCTGACGACCCATGTGACGGCCTACAGAGACAAATTTTCGTCATGGTACTTCCCGGCGATTTCAGGTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATGTAGCTCTATTTTAAGCTGAT</pcr_primer_p1>
		<pcr_primer_p2>ACGACCTGGAATTTTCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>435</pcr_amplicon_size>
		<canonical_amplicon>TGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGT</canonical_amplicon>
		<polymorphic_amplicon>TGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTWAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27018</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>321865</contig_pos>
        <strand></strand>
        <context>tcagtaaaaa[C/T]tcctargcct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAA</left_flank>
        <right_flank>TCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATTTTAGTACAAAAATCATGTCTCTAGACCGAATTTGCGTCTAGTTACGGCTTGTGCAAGTTGAAGTTTTCTAAGCCTCAGTAAATTTTTTTTGAACTTCTCCAAAAAAACCAAAATACAGTTTTTTCACTTCTTAACAAGATTCTCCAGAAATTTTGGGTTTTTTTTGGTATAAAAACCATGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGTCCGAATGTCGTTCCTGGGTGGATTTCTAGTGGGCGGAGCCACGGGATACGCTCAAGCCCGTCACGCCTACGAAACCAACAACGTCGGTAGGAAATATTTGAGTCCCAGCGATGCGGTAAAACGAAAAATCGATTATGCGATTGTGAGATTTGCGAAAGGAGGATTTGGAACGGGATTCAAGTGTGCACTCATAACTGGATCCATTGTGTAAGATCTCGGAATCTCCAATCTTACGATTTTTTGGGATTTTCAGATTCCTGACGACCCATGTGACGGCCTACAGAGACAAATTTTCGTCATGGTACTTCCCGGCGATTTCAGGTGTGACCGCGGGTTTACTGCATACAGGTATAGCGCGGATTAGTGATAAAAGTTTCTATTT</canonical>
            <polymorphic>TCATTTTAGTACAAAAATCATGTCTCTAGACCGAATTTGCGTCTAGTTACGGCTTGTGCAAGTTGAAGTTTTCTAAGCCTCAGTAAATTTTTTTTGAACTTCTCCAAAAAAACCAAAATACAGTTTTTTCACTTCTTAACAAGATTCTCCAGAAATTTTGGGTTTTTTTTGGTATAAAAACCATGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAAYTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGTCCGAATGTCGTTCCTGGGTGGATTTCTAGTGGGCGGAGCCACGGGATACGCTCAAGCCCGTCACGCCTACGAAACCAACAACGTCGGTAGGAAATATTTGAGTCCCAGCGATGCGGTAAAACGAAAAATCGATTATGCGATTGTGAGATTTGCGAAAGGAGGATTTGGAACGGGATTCAAGTGTGCACTCATAACTGGATCCATTGTGTAAGATCTCGGAATCTCCAATCTTACGATTTTTTGGGATTTTCAGATTCCTGACGACCCATGTGACGGCCTACAGAGACAAATTTTCGTCATGGTACTTCCCGGCGATTTCAGGTGTGACCGCGGGTTTACTGCATACAGGTATAGCGCGGATTAGTGATAAAAGTTTCTATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATGTAGCTCTATTTTAAGCTGAT</pcr_primer_p1>
		<pcr_primer_p2>ACGACCTGGAATTTTCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>435</pcr_amplicon_size>
		<canonical_amplicon>TGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAAYTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGT</canonical_amplicon>
		<polymorphic_amplicon>TGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAAYTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27019</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>321871</contig_pos>
        <strand></strand>
        <context>aaaaytccta[G/A]gcctcagtaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTA</left_flank>
        <right_flank>GCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGTACAAAAATCATGTCTCTAGACCGAATTTGCGTCTAGTTACGGCTTGTGCAAGTTGAAGTTTTCTAAGCCTCAGTAAATTTTTTTTGAACTTCTCCAAAAAAACCAAAATACAGTTTTTTCACTTCTTAACAAGATTCTCCAGAAATTTTGGGTTTTTTTTGGTATAAAAACCATGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGTCCGAATGTCGTTCCTGGGTGGATTTCTAGTGGGCGGAGCCACGGGATACGCTCAAGCCCGTCACGCCTACGAAACCAACAACGTCGGTAGGAAATATTTGAGTCCCAGCGATGCGGTAAAACGAAAAATCGATTATGCGATTGTGAGATTTGCGAAAGGAGGATTTGGAACGGGATTCAAGTGTGCACTCATAACTGGATCCATTGTGTAAGATCTCGGAATCTCCAATCTTACGATTTTTTGGGATTTTCAGATTCCTGACGACCCATGTGACGGCCTACAGAGACAAATTTTCGTCATGGTACTTCCCGGCGATTTCAGGTGTGACCGCGGGTTTACTGCATACAGGTATAGCGCGGATTAGTGATAAAAGTTTCTATTTGTAGCG</canonical>
            <polymorphic>TAGTACAAAAATCATGTCTCTAGACCGAATTTGCGTCTAGTTACGGCTTGTGCAAGTTGAAGTTTTCTAAGCCTCAGTAAATTTTTTTTGAACTTCTCCAAAAAAACCAAAATACAGTTTTTTCACTTCTTAACAAGATTCTCCAGAAATTTTGGGTTTTTTTTGGTATAAAAACCATGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTARGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGTCCGAATGTCGTTCCTGGGTGGATTTCTAGTGGGCGGAGCCACGGGATACGCTCAAGCCCGTCACGCCTACGAAACCAACAACGTCGGTAGGAAATATTTGAGTCCCAGCGATGCGGTAAAACGAAAAATCGATTATGCGATTGTGAGATTTGCGAAAGGAGGATTTGGAACGGGATTCAAGTGTGCACTCATAACTGGATCCATTGTGTAAGATCTCGGAATCTCCAATCTTACGATTTTTTGGGATTTTCAGATTCCTGACGACCCATGTGACGGCCTACAGAGACAAATTTTCGTCATGGTACTTCCCGGCGATTTCAGGTGTGACCGCGGGTTTACTGCATACAGGTATAGCGCGGATTAGTGATAAAAGTTTCTATTTGTAGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGGCCT</site>
                <isoschizomers>
                    <enzyme>AatI</enzyme>
                    <enzyme>Eco147I</enzyme>
                    <enzyme>PceI</enzyme>
                    <enzyme>SseBI</enzyme>
                    <enzyme>StuI</enzyme>
                </isoschizomers>
                <canonical_bands>499 379 122</canonical_bands>
                <polymorphic_bands>501 499</polymorphic_bands>
            </assay>
            <assay>
                <site>CCTAGG</site>
                <isoschizomers>
                    <enzyme>AvrII</enzyme>
                    <enzyme>BlnI</enzyme>
                    <enzyme>BspA2I</enzyme>
                    <enzyme>XmaJI</enzyme>
                </isoschizomers>
                <canonical_bands>504 374 122</canonical_bands>
                <polymorphic_bands>504 496</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>362 338 141 122 20 17</canonical_bands>
                <polymorphic_bands>460 362 141 20 17</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>374 289 129 122 60 26</canonical_bands>
                <polymorphic_bands>496 289 129 60 26</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>387 379 122 112</canonical_bands>
                <polymorphic_bands>501 387 112</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>504 374 122</canonical_bands>
                <polymorphic_bands>504 496</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>220 115 112 89 46 42 41 35 25 22 21 21 21 21 20 20 20 20 20 20 19 18 12</canonical_bands>
                <polymorphic_bands>220 115 112 89 46 42 41 41 35 25 22 21 21 21 20 20 20 20 20 19 18 12</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>499 379 122</canonical_bands>
                <polymorphic_bands>501 499</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTATGTAGCTCTATTTTAAGCTGAT</pcr_primer_p1>
		<pcr_primer_p2>ACGACCTGGAATTTTCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>435</pcr_amplicon_size>
		<canonical_amplicon>TGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTARGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGT</canonical_amplicon>
		<polymorphic_amplicon>TGTATGTAGCTCTATTTTAAGCTGATATCGCTTGTGAGCGTTTTGAAATTCCTTAGCCTCAGTAAAAAAATTCGTAAGCCTCAGTAAAAAATTCCTTAGCTTCAGTAAAAAATTCCTAAGCCTCAGTAAAATAATCCTATGCCTCAGTAAAAATGTTCTAAGCCTCAGTATAAATTCCTTAGCCTCAGTAAAAACTCCTARGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAATCTCTAAGCCTCAGTAAAAATTCCTTAGCCTCAGTAAAAATGTTCTAAGTCTCAGTAAAAATTCCTAAGCCTCAGTAAAAACTCCTAGGCCTCAGTAAAATAATCCTAAGCCTCAGTAAAAAACCTAAGCCTCAGTAAAATACTCTAAGCCTCAGTAAAATAAAAATTTTCGCGAAAAAAAAGAGAAAATTCCAGGTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27020</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>324945</contig_pos>
        <strand>+</strand>
        <context>TTGTGGCCTT[C/T]CTCTCCACCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCTTCAACTTGCTCATCTCCACCATCGGATCCGCCGCTCTTGTGGCCTT</left_flank>
        <right_flank>CTCTCCACCGCCAAGAACTAGAAGACGTCGTTATGAATGAATGTTGAATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATGTGTTTTCTGTCAAGTTGATCGAAAATTGTCAATCAAGCCCAGGTTGCGACATGTTACCGGAAAGGAACCAGGCCTGAATAATATAGGCGTGATGGGCTCTGTCAAGATCTATAATTTGGTACCAAAACTGTCTGATCATCTCGTTCTAGGGACAAGTTATTAGCCGGCCCGCTTGCAACTATTTTAAAATACCTTAATTCTCACGATATTTCTCATTTTTCAGAATTGTCATGAAGCGCGGACCAGCCGTCGATCGTGAGATCAACACCAAGTTCGCCAGTGACAAGAAGATGACCATCAAAGAGAAGGAGGAGCGTGCTCTTTTCCGCAAGAACGAGGTCGCCGACACCGAATCCACCTACTTGTCCGTCTTCTACACCAACACCCTCTTCCTCACCATCATGCTCATCTCGGCGTTCTTCCTTCTCGCCAACTTGGCTCCAGTCTTCAACTTGCTCATCTCCACCATCGGATCCGCCGCTCTTGTGGCCTTCCTCTCCACCGCCAAGAACTAGAAGACGTCGTTATGAATGAATGTTGAATCTATTCGCAAAACGGGATACATCCTTTATTTGTTTTTTTTAAACCATGTATTTATCAGATTCCCTCAGTTTAATTTATTTATTATTATTTTTTTTCATGTTTTGTGATTCAAAAAGATAGTTTTTTTTATTGTATAATAAATTCCCCCACCACAAAACCTAATTTTGCTTGTTTTAGCTAGGTTTCCAGAGTTTTCGTCTTTATTACTAATATTTCTAGTCTCTAGTCCCATCTCTCTAACGTTTTCCAAAAGATTTCAGAAGATGACATCGGTCCCATGTCCCTATTCAAAAATCCAGCCAGAATTCATAAACACAAAATCCATCCAACGAATGCCTATGAAAGATTCAGCGCTCGTTGAGCTGCTTCGTGTGGAATCTCCATCATCCCTGTTTGTCCGTCCCATCAGCCATATTCGAGACCAACTAGTCTACACGGAGCCCTATTTTCT</canonical>
            <polymorphic>AAAATGTGTTTTCTGTCAAGTTGATCGAAAATTGTCAATCAAGCCCAGGTTGCGACATGTTACCGGAAAGGAACCAGGCCTGAATAATATAGGCGTGATGGGCTCTGTCAAGATCTATAATTTGGTACCAAAACTGTCTGATCATCTCGTTCTAGGGACAAGTTATTAGCCGGCCCGCTTGCAACTATTTTAAAATACCTTAATTCTCACGATATTTCTCATTTTTCAGAATTGTCATGAAGCGCGGACCAGCCGTCGATCGTGAGATCAACACCAAGTTCGCCAGTGACAAGAAGATGACCATCAAAGAGAAGGAGGAGCGTGCTCTTTTCCGCAAGAACGAGGTCGCCGACACCGAATCCACCTACTTGTCCGTCTTCTACACCAACACCCTCTTCCTCACCATCATGCTCATCTCGGCGTTCTTCCTTCTCGCCAACTTGGCTCCAGTCTTCAACTTGCTCATCTCCACCATCGGATCCGCCGCTCTTGTGGCCTTYCTCTCCACCGCCAAGAACTAGAAGACGTCGTTATGAATGAATGTTGAATCTATTCGCAAAACGGGATACATCCTTTATTTGTTTTTTTTAAACCATGTATTTATCAGATTCCCTCAGTTTAATTTATTTATTATTATTTTTTTTCATGTTTTGTGATTCAAAAAGATAGTTTTTTTTATTGTATAATAAATTCCCCCACCACAAAACCTAATTTTGCTTGTTTTAGCTAGGTTTCCAGAGTTTTCGTCTTTATTACTAATATTTCTAGTCTCTAGTCCCATCTCTCTAACGTTTTCCAAAAGATTTCAGAAGATGACATCGGTCCCATGTCCCTATTCAAAAATCCAGCCAGAATTCATAAACACAAAATCCATCCAACGAATGCCTATGAAAGATTCAGCGCTCGTTGAGCTGCTTCGTGTGGAATCTCCATCATCCCTGTTTGTCCGTCCCATCAGCCATATTCGAGACCAACTAGTCTACACGGAGCCCTATTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTACTTGTCCGTCTTCTACACC</pcr_primer_p1>
		<pcr_primer_p2>AGGGAATCTGATAAATACATGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTACTTGTCCGTCTTCTACACCAACACCCTCTTCCTCACCATCATGCTCATCTCGGCGTTCTTCCTTCTCGCCAACTTGGCTCCAGTCTTCAACTTGCTCATCTCCACCATCGGATCCGCCGCTCTTGTGGCCTTCCTCTCCACCGCCAAGAACTAGAAGACGTCGTTATGAATGAATGTTGAATCTATTCGCAAAACGGGATACATCCTTTATTTGTTTTTTTTAAACCATGTATTTATCAGATTCCCT</canonical_amplicon>
		<polymorphic_amplicon>CTACTTGTCCGTCTTCTACACCAACACCCTCTTCCTCACCATCATGCTCATCTCGGCGTTCTTCCTTCTCGCCAACTTGGCTCCAGTCTTCAACTTGCTCATCTCCACCATCGGATCCGCCGCTCTTGTGGCCTTYCTCTCCACCGCCAAGAACTAGAAGACGTCGTTATGAATGAATGTTGAATCTATTCGCAAAACGGGATACATCCTTTATTTGTTTTTTTTAAACCATGTATTTATCAGATTCCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27021</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>325034</contig_pos>
        <strand>+</strand>
        <context>TTGTTTTTTT[A/T]AAACCATGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAATGTTGAATCTATTCGCAAAACGGGATACATCCTTTATTTGTTTTTTT</left_flank>
        <right_flank>AAACCATGTATTTATCAGATTCCCTCAGTTTAATTTATTTATTATTATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGGCGTGATGGGCTCTGTCAAGATCTATAATTTGGTACCAAAACTGTCTGATCATCTCGTTCTAGGGACAAGTTATTAGCCGGCCCGCTTGCAACTATTTTAAAATACCTTAATTCTCACGATATTTCTCATTTTTCAGAATTGTCATGAAGCGCGGACCAGCCGTCGATCGTGAGATCAACACCAAGTTCGCCAGTGACAAGAAGATGACCATCAAAGAGAAGGAGGAGCGTGCTCTTTTCCGCAAGAACGAGGTCGCCGACACCGAATCCACCTACTTGTCCGTCTTCTACACCAACACCCTCTTCCTCACCATCATGCTCATCTCGGCGTTCTTCCTTCTCGCCAACTTGGCTCCAGTCTTCAACTTGCTCATCTCCACCATCGGATCCGCCGCTCTTGTGGCCTTCCTCTCCACCGCCAAGAACTAGAAGACGTCGTTATGAATGAATGTTGAATCTATTCGCAAAACGGGATACATCCTTTATTTGTTTTTTTTAAACCATGTATTTATCAGATTCCCTCAGTTTAATTTATTTATTATTATTTTTTTTCATGTTTTGTGATTCAAAAAGATAGTTTTTTTTATTGTATAATAAATTCCCCCACCACAAAACCTAATTTTGCTTGTTTTAGCTAGGTTTCCAGAGTTTTCGTCTTTATTACTAATATTTCTAGTCTCTAGTCCCATCTCTCTAACGTTTTCCAAAAGATTTCAGAAGATGACATCGGTCCCATGTCCCTATTCAAAAATCCAGCCAGAATTCATAAACACAAAATCCATCCAACGAATGCCTATGAAAGATTCAGCGCTCGTTGAGCTGCTTCGTGTGGAATCTCCATCATCCCTGTTTGTCCGTCCCATCAGCCATATTCGAGACCAACTAGTCTACACGGAGCCCTATTTTCTAGTCCCTCATACTAATTTCGAAGCAGGCAATTATGCATTAGCTCCGATTGAAGAGAGGGTGTTTGGGAGGTGTCTGATTGTCAGAAATA</canonical>
            <polymorphic>TAGGCGTGATGGGCTCTGTCAAGATCTATAATTTGGTACCAAAACTGTCTGATCATCTCGTTCTAGGGACAAGTTATTAGCCGGCCCGCTTGCAACTATTTTAAAATACCTTAATTCTCACGATATTTCTCATTTTTCAGAATTGTCATGAAGCGCGGACCAGCCGTCGATCGTGAGATCAACACCAAGTTCGCCAGTGACAAGAAGATGACCATCAAAGAGAAGGAGGAGCGTGCTCTTTTCCGCAAGAACGAGGTCGCCGACACCGAATCCACCTACTTGTCCGTCTTCTACACCAACACCCTCTTCCTCACCATCATGCTCATCTCGGCGTTCTTCCTTCTCGCCAACTTGGCTCCAGTCTTCAACTTGCTCATCTCCACCATCGGATCCGCCGCTCTTGTGGCCTTCCTCTCCACCGCCAAGAACTAGAAGACGTCGTTATGAATGAATGTTGAATCTATTCGCAAAACGGGATACATCCTTTATTTGTTTTTTTWAAACCATGTATTTATCAGATTCCCTCAGTTTAATTTATTTATTATTATTTTTTTTCATGTTTTGTGATTCAAAAAGATAGTTTTTTTTATTGTATAATAAATTCCCCCACCACAAAACCTAATTTTGCTTGTTTTAGCTAGGTTTCCAGAGTTTTCGTCTTTATTACTAATATTTCTAGTCTCTAGTCCCATCTCTCTAACGTTTTCCAAAAGATTTCAGAAGATGACATCGGTCCCATGTCCCTATTCAAAAATCCAGCCAGAATTCATAAACACAAAATCCATCCAACGAATGCCTATGAAAGATTCAGCGCTCGTTGAGCTGCTTCGTGTGGAATCTCCATCATCCCTGTTTGTCCGTCCCATCAGCCATATTCGAGACCAACTAGTCTACACGGAGCCCTATTTTCTAGTCCCTCATACTAATTTCGAAGCAGGCAATTATGCATTAGCTCCGATTGAAGAGAGGGTGTTTGGGAGGTGTCTGATTGTCAGAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 398 102</canonical_bands>
                <polymorphic_bands>898 102</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>470 388 101 31 10</canonical_bands>
                <polymorphic_bands>470 419 101 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACTAGAAGACGTCGTTATGAA</pcr_primer_p1>
		<pcr_primer_p2>ATAAAGACGAAAACTCTGGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GAACTAGAAGACGTCGTTATGAATGAATGTTGAATCTATTCGCAAAACGGGATACATCCTTTATTTGTTTTTTTTAAACCATGTATTTATCAGATTCCCTCAGTTTAATTTATTTATTATTATTTTTTTTCATGTTTTGTGATTCAAAAAGATAGTTTTTTTTATTGTATAATAAATTCCCCCACCACAAAACCTAATTTTGCTTGTTTTAGCTAGGTTTCCAGAGTTTTCGTCTTTAT</canonical_amplicon>
		<polymorphic_amplicon>GAACTAGAAGACGTCGTTATGAATGAATGTTGAATCTATTCGCAAAACGGGATACATCCTTTATTTGTTTTTTTWAAACCATGTATTTATCAGATTCCCTCAGTTTAATTTATTTATTATTATTTTTTTTCATGTTTTGTGATTCAAAAAGATAGTTTTTTTTATTGTATAATAAATTCCCCCACCACAAAACCTAATTTTGCTTGTTTTAGCTAGGTTTCCAGAGTTTTCGTCTTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27022</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>325115</contig_pos>
        <strand>+</strand>
        <context>AAAAAGATAG[A/C]TTTTTTTATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAATTTATTTATTATTATTTTTTTTCATGTTTTGTGATTCAAAAAGATAG</left_flank>
        <right_flank>TTTTTTTATTGTATAATAAATTCCCCCACCACAAAACCTAATTTTGCTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGCCCGCTTGCAACTATTTTAAAATACCTTAATTCTCACGATATTTCTCATTTTTCAGAATTGTCATGAAGCGCGGACCAGCCGTCGATCGTGAGATCAACACCAAGTTCGCCAGTGACAAGAAGATGACCATCAAAGAGAAGGAGGAGCGTGCTCTTTTCCGCAAGAACGAGGTCGCCGACACCGAATCCACCTACTTGTCCGTCTTCTACACCAACACCCTCTTCCTCACCATCATGCTCATCTCGGCGTTCTTCCTTCTCGCCAACTTGGCTCCAGTCTTCAACTTGCTCATCTCCACCATCGGATCCGCCGCTCTTGTGGCCTTCCTCTCCACCGCCAAGAACTAGAAGACGTCGTTATGAATGAATGTTGAATCTATTCGCAAAACGGGATACATCCTTTATTTGTTTTTTTTAAACCATGTATTTATCAGATTCCCTCAGTTTAATTTATTTATTATTATTTTTTTTCATGTTTTGTGATTCAAAAAGATAGTTTTTTTTATTGTATAATAAATTCCCCCACCACAAAACCTAATTTTGCTTGTTTTAGCTAGGTTTCCAGAGTTTTCGTCTTTATTACTAATATTTCTAGTCTCTAGTCCCATCTCTCTAACGTTTTCCAAAAGATTTCAGAAGATGACATCGGTCCCATGTCCCTATTCAAAAATCCAGCCAGAATTCATAAACACAAAATCCATCCAACGAATGCCTATGAAAGATTCAGCGCTCGTTGAGCTGCTTCGTGTGGAATCTCCATCATCCCTGTTTGTCCGTCCCATCAGCCATATTCGAGACCAACTAGTCTACACGGAGCCCTATTTTCTAGTCCCTCATACTAATTTCGAAGCAGGCAATTATGCATTAGCTCCGATTGAAGAGAGGGTGTTTGGGAGGTGTCTGATTGTCAGAAATATTCCACTTCTAGAAGCCTGTCGGGTGTTTTTCATCGATGACGCTGTGACGGCTAATGTCTCTTGGAAGGTTGGAAAAAGGC</canonical>
            <polymorphic>CGGCCCGCTTGCAACTATTTTAAAATACCTTAATTCTCACGATATTTCTCATTTTTCAGAATTGTCATGAAGCGCGGACCAGCCGTCGATCGTGAGATCAACACCAAGTTCGCCAGTGACAAGAAGATGACCATCAAAGAGAAGGAGGAGCGTGCTCTTTTCCGCAAGAACGAGGTCGCCGACACCGAATCCACCTACTTGTCCGTCTTCTACACCAACACCCTCTTCCTCACCATCATGCTCATCTCGGCGTTCTTCCTTCTCGCCAACTTGGCTCCAGTCTTCAACTTGCTCATCTCCACCATCGGATCCGCCGCTCTTGTGGCCTTCCTCTCCACCGCCAAGAACTAGAAGACGTCGTTATGAATGAATGTTGAATCTATTCGCAAAACGGGATACATCCTTTATTTGTTTTTTTTAAACCATGTATTTATCAGATTCCCTCAGTTTAATTTATTTATTATTATTTTTTTTCATGTTTTGTGATTCAAAAAGATAGMTTTTTTTATTGTATAATAAATTCCCCCACCACAAAACCTAATTTTGCTTGTTTTAGCTAGGTTTCCAGAGTTTTCGTCTTTATTACTAATATTTCTAGTCTCTAGTCCCATCTCTCTAACGTTTTCCAAAAGATTTCAGAAGATGACATCGGTCCCATGTCCCTATTCAAAAATCCAGCCAGAATTCATAAACACAAAATCCATCCAACGAATGCCTATGAAAGATTCAGCGCTCGTTGAGCTGCTTCGTGTGGAATCTCCATCATCCCTGTTTGTCCGTCCCATCAGCCATATTCGAGACCAACTAGTCTACACGGAGCCCTATTTTCTAGTCCCTCATACTAATTTCGAAGCAGGCAATTATGCATTAGCTCCGATTGAAGAGAGGGTGTTTGGGAGGTGTCTGATTGTCAGAAATATTCCACTTCTAGAAGCCTGTCGGGTGTTTTTCATCGATGACGCTGTGACGGCTAATGTCTCTTGGAAGGTTGGAAAAAGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTAGAAGACGTCGTTATGAA</pcr_primer_p1>
		<pcr_primer_p2>ATAAAGACGAAAACTCTGGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GAACTAGAAGACGTCGTTATGAATGAATGTTGAATCTATTCGCAAAACGGGATACATCCTTTATTTGTTTTTTTTAAACCATGTATTTATCAGATTCCCTCAGTTTAATTTATTTATTATTATTTTTTTTCATGTTTTGTGATTCAAAAAGATAGTTTTTTTTATTGTATAATAAATTCCCCCACCACAAAACCTAATTTTGCTTGTTTTAGCTAGGTTTCCAGAGTTTTCGTCTTTAT</canonical_amplicon>
		<polymorphic_amplicon>GAACTAGAAGACGTCGTTATGAATGAATGTTGAATCTATTCGCAAAACGGGATACATCCTTTATTTGTTTTTTTTAAACCATGTATTTATCAGATTCCCTCAGTTTAATTTATTTATTATTATTTTTTTTCATGTTTTGTGATTCAAAAAGATAGMTTTTTTTATTGTATAATAAATTCCCCCACCACAAAACCTAATTTTGCTTGTTTTAGCTAGGTTTCCAGAGTTTTCGTCTTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27023</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>325153</contig_pos>
        <strand></strand>
        <context>ACCACAAAAC[C/A]TAATTTTGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TCAAAAAGATAGTTTTTTTTATTGTATAATAAATTCCCCCACCACAAAAC</left_flank>
        <right_flank>TAATTTTGCTTGTTTTAGCTAGGTTTCCAGAGTTTTCGTCTTTATTACTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGATATTTCTCATTTTTCAGAATTGTCATGAAGCGCGGACCAGCCGTCGATCGTGAGATCAACACCAAGTTCGCCAGTGACAAGAAGATGACCATCAAAGAGAAGGAGGAGCGTGCTCTTTTCCGCAAGAACGAGGTCGCCGACACCGAATCCACCTACTTGTCCGTCTTCTACACCAACACCCTCTTCCTCACCATCATGCTCATCTCGGCGTTCTTCCTTCTCGCCAACTTGGCTCCAGTCTTCAACTTGCTCATCTCCACCATCGGATCCGCCGCTCTTGTGGCCTTCCTCTCCACCGCCAAGAACTAGAAGACGTCGTTATGAATGAATGTTGAATCTATTCGCAAAACGGGATACATCCTTTATTTGTTTTTTTTAAACCATGTATTTATCAGATTCCCTCAGTTTAATTTATTTATTATTATTTTTTTTCATGTTTTGTGATTCAAAAAGATAGTTTTTTTTATTGTATAATAAATTCCCCCACCACAAAACCTAATTTTGCTTGTTTTAGCTAGGTTTCCAGAGTTTTCGTCTTTATTACTAATATTTCTAGTCTCTAGTCCCATCTCTCTAACGTTTTCCAAAAGATTTCAGAAGATGACATCGGTCCCATGTCCCTATTCAAAAATCCAGCCAGAATTCATAAACACAAAATCCATCCAACGAATGCCTATGAAAGATTCAGCGCTCGTTGAGCTGCTTCGTGTGGAATCTCCATCATCCCTGTTTGTCCGTCCCATCAGCCATATTCGAGACCAACTAGTCTACACGGAGCCCTATTTTCTAGTCCCTCATACTAATTTCGAAGCAGGCAATTATGCATTAGCTCCGATTGAAGAGAGGGTGTTTGGGAGGTGTCTGATTGTCAGAAATATTCCACTTCTAGAAGCCTGTCGGGTGTTTTTCATCGATGACGCTGTGACGGCTAATGTCTCTTGGAAGGTTGGAAAAAGGCGGAAATTCTAAAAATTCAGAGAATTTTCAGTGTCTATT</canonical>
            <polymorphic>ACGATATTTCTCATTTTTCAGAATTGTCATGAAGCGCGGACCAGCCGTCGATCGTGAGATCAACACCAAGTTCGCCAGTGACAAGAAGATGACCATCAAAGAGAAGGAGGAGCGTGCTCTTTTCCGCAAGAACGAGGTCGCCGACACCGAATCCACCTACTTGTCCGTCTTCTACACCAACACCCTCTTCCTCACCATCATGCTCATCTCGGCGTTCTTCCTTCTCGCCAACTTGGCTCCAGTCTTCAACTTGCTCATCTCCACCATCGGATCCGCCGCTCTTGTGGCCTTCCTCTCCACCGCCAAGAACTAGAAGACGTCGTTATGAATGAATGTTGAATCTATTCGCAAAACGGGATACATCCTTTATTTGTTTTTTTTAAACCATGTATTTATCAGATTCCCTCAGTTTAATTTATTTATTATTATTTTTTTTCATGTTTTGTGATTCAAAAAGATAGTTTTTTTTATTGTATAATAAATTCCCCCACCACAAAACMTAATTTTGCTTGTTTTAGCTAGGTTTCCAGAGTTTTCGTCTTTATTACTAATATTTCTAGTCTCTAGTCCCATCTCTCTAACGTTTTCCAAAAGATTTCAGAAGATGACATCGGTCCCATGTCCCTATTCAAAAATCCAGCCAGAATTCATAAACACAAAATCCATCCAACGAATGCCTATGAAAGATTCAGCGCTCGTTGAGCTGCTTCGTGTGGAATCTCCATCATCCCTGTTTGTCCGTCCCATCAGCCATATTCGAGACCAACTAGTCTACACGGAGCCCTATTTTCTAGTCCCTCATACTAATTTCGAAGCAGGCAATTATGCATTAGCTCCGATTGAAGAGAGGGTGTTTGGGAGGTGTCTGATTGTCAGAAATATTCCACTTCTAGAAGCCTGTCGGGTGTTTTTCATCGATGACGCTGTGACGGCTAATGTCTCTTGGAAGGTTGGAAAAAGGCGGAAATTCTAAAAATTCAGAGAATTTTCAGTGTCTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTGAATCTATTCGCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>ACGTTAGAGAGATGGGACTAGAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGTTGAATCTATTCGCAAAACGGGATACATCCTTTATTTGTTTTTTTTAAACCATGTATTTATCAGATTCCCTCAGTTTAATTTATTTATTATTATTTTTTTTCATGTTTTGTGATTCAAAAAGATAGTTTTTTTTATTGTATAATAAATTCCCCCACCACAAAACCTAATTTTGCTTGTTTTAGCTAGGTTTCCAGAGTTTTCGTCTTTATTACTAATATTTCTAGTCTCTAGTCCCATCTCTCTAACGT</canonical_amplicon>
		<polymorphic_amplicon>TGTTGAATCTATTCGCAAAACGGGATACATCCTTTATTTGTTTTTTTTAAACCATGTATTTATCAGATTCCCTCAGTTTAATTTATTTATTATTATTTTTTTTCATGTTTTGTGATTCAAAAAGATAGTTTTTTTTATTGTATAATAAATTCCCCCACCACAAAACMTAATTTTGCTTGTTTTAGCTAGGTTTCCAGAGTTTTCGTCTTTATTACTAATATTTCTAGTCTCTAGTCCCATCTCTCTAACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27024</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>325241</contig_pos>
        <strand>+</strand>
        <context>CTAACGTTTT[C/T]CAAAAGATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCTTTATTACTAATATTTCTAGTCTCTAGTCCCATCTCTCTAACGTTTT</left_flank>
        <right_flank>CAAAAGATTTCAGAAGATGACATCGGTCCCATGTCCCTATTCAAAAATCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGACCATCAAAGAGAAGGAGGAGCGTGCTCTTTTCCGCAAGAACGAGGTCGCCGACACCGAATCCACCTACTTGTCCGTCTTCTACACCAACACCCTCTTCCTCACCATCATGCTCATCTCGGCGTTCTTCCTTCTCGCCAACTTGGCTCCAGTCTTCAACTTGCTCATCTCCACCATCGGATCCGCCGCTCTTGTGGCCTTCCTCTCCACCGCCAAGAACTAGAAGACGTCGTTATGAATGAATGTTGAATCTATTCGCAAAACGGGATACATCCTTTATTTGTTTTTTTTAAACCATGTATTTATCAGATTCCCTCAGTTTAATTTATTTATTATTATTTTTTTTCATGTTTTGTGATTCAAAAAGATAGTTTTTTTTATTGTATAATAAATTCCCCCACCACAAAACCTAATTTTGCTTGTTTTAGCTAGGTTTCCAGAGTTTTCGTCTTTATTACTAATATTTCTAGTCTCTAGTCCCATCTCTCTAACGTTTTCCAAAAGATTTCAGAAGATGACATCGGTCCCATGTCCCTATTCAAAAATCCAGCCAGAATTCATAAACACAAAATCCATCCAACGAATGCCTATGAAAGATTCAGCGCTCGTTGAGCTGCTTCGTGTGGAATCTCCATCATCCCTGTTTGTCCGTCCCATCAGCCATATTCGAGACCAACTAGTCTACACGGAGCCCTATTTTCTAGTCCCTCATACTAATTTCGAAGCAGGCAATTATGCATTAGCTCCGATTGAAGAGAGGGTGTTTGGGAGGTGTCTGATTGTCAGAAATATTCCACTTCTAGAAGCCTGTCGGGTGTTTTTCATCGATGACGCTGTGACGGCTAATGTCTCTTGGAAGGTTGGAAAAAGGCGGAAATTCTAAAAATTCAGAGAATTTTCAGTGTCTATTCGTTTTGAAGGACGAGGAGAGGTTCCATCCGTGGCAAGCGATGCATATTTCTCTGGGGAGATTGGGGTCCTTAACGGTAATCATGAAA</canonical>
            <polymorphic>ATGACCATCAAAGAGAAGGAGGAGCGTGCTCTTTTCCGCAAGAACGAGGTCGCCGACACCGAATCCACCTACTTGTCCGTCTTCTACACCAACACCCTCTTCCTCACCATCATGCTCATCTCGGCGTTCTTCCTTCTCGCCAACTTGGCTCCAGTCTTCAACTTGCTCATCTCCACCATCGGATCCGCCGCTCTTGTGGCCTTCCTCTCCACCGCCAAGAACTAGAAGACGTCGTTATGAATGAATGTTGAATCTATTCGCAAAACGGGATACATCCTTTATTTGTTTTTTTTAAACCATGTATTTATCAGATTCCCTCAGTTTAATTTATTTATTATTATTTTTTTTCATGTTTTGTGATTCAAAAAGATAGTTTTTTTTATTGTATAATAAATTCCCCCACCACAAAACCTAATTTTGCTTGTTTTAGCTAGGTTTCCAGAGTTTTCGTCTTTATTACTAATATTTCTAGTCTCTAGTCCCATCTCTCTAACGTTTTYCAAAAGATTTCAGAAGATGACATCGGTCCCATGTCCCTATTCAAAAATCCAGCCAGAATTCATAAACACAAAATCCATCCAACGAATGCCTATGAAAGATTCAGCGCTCGTTGAGCTGCTTCGTGTGGAATCTCCATCATCCCTGTTTGTCCGTCCCATCAGCCATATTCGAGACCAACTAGTCTACACGGAGCCCTATTTTCTAGTCCCTCATACTAATTTCGAAGCAGGCAATTATGCATTAGCTCCGATTGAAGAGAGGGTGTTTGGGAGGTGTCTGATTGTCAGAAATATTCCACTTCTAGAAGCCTGTCGGGTGTTTTTCATCGATGACGCTGTGACGGCTAATGTCTCTTGGAAGGTTGGAAAAAGGCGGAAATTCTAAAAATTCAGAGAATTTTCAGTGTCTATTCGTTTTGAAGGACGAGGAGAGGTTCCATCCGTGGCAAGCGATGCATATTTCTCTGGGGAGATTGGGGTCCTTAACGGTAATCATGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCAGAGTTTTCGTCTTTATTA</pcr_primer_p1>
		<pcr_primer_p2>GACTAGTTGGTCTCGAATATGG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTCCAGAGTTTTCGTCTTTATTACTAATATTTCTAGTCTCTAGTCCCATCTCTCTAACGTTTTCCAAAAGATTTCAGAAGATGACATCGGTCCCATGTCCCTATTCAAAAATCCAGCCAGAATTCATAAACACAAAATCCATCCAACGAATGCCTATGAAAGATTCAGCGCTCGTTGAGCTGCTTCGTGTGGAATCTCCATCATCCCTGTTTGTCCGTCCCATCAGCCATATTCGAGACCAACTAGTC</canonical_amplicon>
		<polymorphic_amplicon>TTCCAGAGTTTTCGTCTTTATTACTAATATTTCTAGTCTCTAGTCCCATCTCTCTAACGTTTTYCAAAAGATTTCAGAAGATGACATCGGTCCCATGTCCCTATTCAAAAATCCAGCCAGAATTCATAAACACAAAATCCATCCAACGAATGCCTATGAAAGATTCAGCGCTCGTTGAGCTGCTTCGTGTGGAATCTCCATCATCCCTGTTTGTCCGTCCCATCAGCCATATTCGAGACCAACTAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27025</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>327532</contig_pos>
        <strand></strand>
        <context>agttttgagt[T/A]taacacaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATGTTTTTTGAAAAAATGTAAAAATAGGAAATTTCCAATAGTTTTGAGT</left_flank>
        <right_flank>TAACACAAAATATTTCAAGTCCTATATTCTCCTAGAAGTGGAGAAAATGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTATTCCCCTCGAAAATAAAAATAGAAAAATGACTCATTTTTCTAGAAAAACACCCCCACCCCCAAAATTGTATTAGCCCTTAAAATTATTTTCAGCACTTACAATGTTGTTGTCTTCAGCCTTAACACTCTAAATCAACGGATACCTAAAAACAAGCTCCCTGAATGTGTACCTATAACCTATTCTTGGTACTTTCGAAAAAACAAACAAACACCCAAGTTTTAGAATTTGAAAAAAATCACATTTTCAGTGTAAAATCGGCAATTTTCAAATTTAATTTCCTTGACTCCTAGGAGGTTTTAGGACTTGAAATTTTTGTTTTATACTCCGAACTATTTGAAATTTCATATTTTTACATTATTGTTTAAAAAATTTACAAACTTGAAAACTTGGGTCCACCCAAAGTGTAGGCGAGCTTTGAAACTTTCCAAAACTTTTCCGGAAAAATGTTTTTTGAAAAAATGTAAAAATAGGAAATTTCCAATAGTTTTGAGTTTAACACAAAATATTTCAAGTCCTATATTCTCCTAGAAGTGGAGAAAATGAAATTTGAAAACTGCCGACCCTTATGTGATTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACAGACAAACAATCCAAAATACGAAAAAAAAATGGAAAAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTGAAAATTTCCTCAGGCCCGGCTCGGCCCGGCCCGGAATTTTACAAGTATGATTTTAGGTGCTTTTTGCGCTATTTGGGCGAAAAAAATCGGAAAAATTCATTAAAAATAGCTTTTGACGCTAAAGATGTATTTTTGGGCAAAATTTGTAGACCTTTTCCGGGTTTTCAGCTATTTTTGAAGATTCTTTTTCGATTTTTCCCCGTTTTTTTTGTCTGAAATATGATGTCTGAAATTTTTTTGGATGATGTTCGTGCGAAGATTACTGTAGATTACTGTAGAAGATTTGTA</canonical>
            <polymorphic>AATTTATTCCCCTCGAAAATAAAAATAGAAAAATGACTCATTTTTCTAGAAAAACACCCCCACCCCCAAAATTGTATTAGCCCTTAAAATTATTTTCAGCACTTACAATGTTGTTGTCTTCAGCCTTAACACTCTAAATCAACGGATACCTAAAAACAAGCTCCCTGAATGTGTACCTATAACCTATTCTTGGTACTTTCGAAAAAACAAACAAACACCCAAGTTTTAGAATTTGAAAAAAATCACATTTTCAGTGTAAAATCGGCAATTTTCAAATTTAATTTCCTTGACTCCTAGGAGGTTTTAGGACTTGAAATTTTTGTTTTATACTCCGAACTATTTGAAATTTCATATTTTTACATTATTGTTTAAAAAATTTACAAACTTGAAAACTTGGGTCCACCCAAAGTGTAGGCGAGCTTTGAAACTTTCCAAAACTTTTCCGGAAAAATGTTTTTTGAAAAAATGTAAAAATAGGAAATTTCCAATAGTTTTGAGTWTAACACAAAATATTTCAAGTCCTATATTCTCCTAGAAGTGGAGAAAATGAAATTTGAAAACTGCCGACCCTTATGTGATTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACAGACAAACAATCCAAAATACGAAAAAAAAATGGAAAAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTGAAAATTTCCTCAGGCCCGGCTCGGCCCGGCCCGGAATTTTACAAGTATGATTTTAGGTGCTTTTTGCGCTATTTGGGCGAAAAAAATCGGAAAAATTCATTAAAAATAGCTTTTGACGCTAAAGATGTATTTTTGGGCAAAATTTGTAGACCTTTTCCGGGTTTTCAGCTATTTTTGAAGATTCTTTTTCGATTTTTCCCCGTTTTTTTTGTCTGAAATATGATGTCTGAAATTTTTTTGGATGATGTTCGTGCGAAGATTACTGTAGATTACTGTAGAAGATTTGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>312 188 152 131 91 84 42</canonical_bands>
                <polymorphic_bands>443 188 152 91 84 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAAACACCCAAGTTTTAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TGGATTGTTTGTCTGTCTGAT</pcr_primer_p2>
		<pcr_amplicon_size>418</pcr_amplicon_size>
		<canonical_amplicon>AACAAACACCCAAGTTTTAGAATTTGAAAAAAATCACATTTTCAGTGTAAAATCGGCAATTTTCAAATTTAATTTCCTTGACTCCTAGGAGGTTTTAGGACTTGAAATTTTTGTTTTATACTCCGAACTATTTGAAATTTCATATTTTTACATTATTGTTTAAAAAATTTACAAACTTGAAAACTTGGGTCCACCCAAAGTGTAGGCGAGCTTTGAAACTTTCCAAAACTTTTCCGGAAAAATGTTTTTTGAAAAAATGTAAAAATAGGAAATTTCCAATAGTTTTGAGTTTAACACAAAATATTTCAAGTCCTATATTCTCCTAGAAGTGGAGAAAATGAAATTTGAAAACTGCCGACCCTTATGTGATTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACAGACAAACAATCCA</canonical_amplicon>
		<polymorphic_amplicon>AACAAACACCCAAGTTTTAGAATTTGAAAAAAATCACATTTTCAGTGTAAAATCGGCAATTTTCAAATTTAATTTCCTTGACTCCTAGGAGGTTTTAGGACTTGAAATTTTTGTTTTATACTCCGAACTATTTGAAATTTCATATTTTTACATTATTGTTTAAAAAATTTACAAACTTGAAAACTTGGGTCCACCCAAAGTGTAGGCGAGCTTTGAAACTTTCCAAAACTTTTCCGGAAAAATGTTTTTTGAAAAAATGTAAAAATAGGAAATTTCCAATAGTTTTGAGTWTAACACAAAATATTTCAAGTCCTATATTCTCCTAGAAGTGGAGAAAATGAAATTTGAAAACTGCCGACCCTTATGTGATTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACAGACAAACAATCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27026</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>327611</contig_pos>
        <strand>+</strand>
        <context>ccttatgtga[A/G]tttttTCGRG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCCTAGAAGTGGAGAAAATGAAATTTGAAAACTGCCGACCCTTATGTGA</left_flank>
        <right_flank>TTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACAGACAAACAATCCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCCTTAAAATTATTTTCAGCACTTACAATGTTGTTGTCTTCAGCCTTAACACTCTAAATCAACGGATACCTAAAAACAAGCTCCCTGAATGTGTACCTATAACCTATTCTTGGTACTTTCGAAAAAACAAACAAACACCCAAGTTTTAGAATTTGAAAAAAATCACATTTTCAGTGTAAAATCGGCAATTTTCAAATTTAATTTCCTTGACTCCTAGGAGGTTTTAGGACTTGAAATTTTTGTTTTATACTCCGAACTATTTGAAATTTCATATTTTTACATTATTGTTTAAAAAATTTACAAACTTGAAAACTTGGGTCCACCCAAAGTGTAGGCGAGCTTTGAAACTTTCCAAAACTTTTCCGGAAAAATGTTTTTTGAAAAAATGTAAAAATAGGAAATTTCCAATAGTTTTGAGTTTAACACAAAATATTTCAAGTCCTATATTCTCCTAGAAGTGGAGAAAATGAAATTTGAAAACTGCCGACCCTTATGTGATTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACAGACAAACAATCCAAAATACGAAAAAAAAATGGAAAAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTGAAAATTTCCTCAGGCCCGGCTCGGCCCGGCCCGGAATTTTACAAGTATGATTTTAGGTGCTTTTTGCGCTATTTGGGCGAAAAAAATCGGAAAAATTCATTAAAAATAGCTTTTGACGCTAAAGATGTATTTTTGGGCAAAATTTGTAGACCTTTTCCGGGTTTTCAGCTATTTTTGAAGATTCTTTTTCGATTTTTCCCCGTTTTTTTTGTCTGAAATATGATGTCTGAAATTTTTTTGGATGATGTTCGTGCGAAGATTACTGTAGATTACTGTAGAAGATTTGTAGTTTTTTTTCCAACAGTTTTAATCTGCATTTTGACGTAATTGCGTTTGCAAAAAAAGAAACTACAAACTACAAGATTTT</canonical>
            <polymorphic>GCCCTTAAAATTATTTTCAGCACTTACAATGTTGTTGTCTTCAGCCTTAACACTCTAAATCAACGGATACCTAAAAACAAGCTCCCTGAATGTGTACCTATAACCTATTCTTGGTACTTTCGAAAAAACAAACAAACACCCAAGTTTTAGAATTTGAAAAAAATCACATTTTCAGTGTAAAATCGGCAATTTTCAAATTTAATTTCCTTGACTCCTAGGAGGTTTTAGGACTTGAAATTTTTGTTTTATACTCCGAACTATTTGAAATTTCATATTTTTACATTATTGTTTAAAAAATTTACAAACTTGAAAACTTGGGTCCACCCAAAGTGTAGGCGAGCTTTGAAACTTTCCAAAACTTTTCCGGAAAAATGTTTTTTGAAAAAATGTAAAAATAGGAAATTTCCAATAGTTTTGAGTTTAACACAAAATATTTCAAGTCCTATATTCTCCTAGAAGTGGAGAAAATGAAATTTGAAAACTGCCGACCCTTATGTGARTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACAGACAAACAATCCAAAATACGAAAAAAAAATGGAAAAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTGAAAATTTCCTCAGGCCCGGCTCGGCCCGGCCCGGAATTTTACAAGTATGATTTTAGGTGCTTTTTGCGCTATTTGGGCGAAAAAAATCGGAAAAATTCATTAAAAATAGCTTTTGACGCTAAAGATGTATTTTTGGGCAAAATTTGTAGACCTTTTCCGGGTTTTCAGCTATTTTTGAAGATTCTTTTTCGATTTTTCCCCGTTTTTTTTGTCTGAAATATGATGTCTGAAATTTTTTTGGATGATGTTCGTGCGAAGATTACTGTAGATTACTGTAGAAGATTTGTAGTTTTTTTTCCAACAGTTTTAATCTGCATTTTGACGTAATTGCGTTTGCAAAAAAAGAAACTACAAACTACAAGATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAAACACCCAAGTTTTAGAAT</pcr_primer_p1>
		<pcr_primer_p2>GTATTTTGGATTGTTTGTCTGTC</pcr_primer_p2>
		<pcr_amplicon_size>424</pcr_amplicon_size>
		<canonical_amplicon>AACAAACACCCAAGTTTTAGAATTTGAAAAAAATCACATTTTCAGTGTAAAATCGGCAATTTTCAAATTTAATTTCCTTGACTCCTAGGAGGTTTTAGGACTTGAAATTTTTGTTTTATACTCCGAACTATTTGAAATTTCATATTTTTACATTATTGTTTAAAAAATTTACAAACTTGAAAACTTGGGTCCACCCAAAGTGTAGGCGAGCTTTGAAACTTTCCAAAACTTTTCCGGAAAAATGTTTTTTGAAAAAATGTAAAAATAGGAAATTTCCAATAGTTTTGAGTTTAACACAAAATATTTCAAGTCCTATATTCTCCTAGAAGTGGAGAAAATGAAATTTGAAAACTGCCGACCCTTATGTGATTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACAGACAAACAATCCAAAATAC</canonical_amplicon>
		<polymorphic_amplicon>AACAAACACCCAAGTTTTAGAATTTGAAAAAAATCACATTTTCAGTGTAAAATCGGCAATTTTCAAATTTAATTTCCTTGACTCCTAGGAGGTTTTAGGACTTGAAATTTTTGTTTTATACTCCGAACTATTTGAAATTTCATATTTTTACATTATTGTTTAAAAAATTTACAAACTTGAAAACTTGGGTCCACCCAAAGTGTAGGCGAGCTTTGAAACTTTCCAAAACTTTTCCGGAAAAATGTTTTTTGAAAAAATGTAAAAATAGGAAATTTCCAATAGTTTTGAGTTTAACACAAAATATTTCAAGTCCTATATTCTCCTAGAAGTGGAGAAAATGAAATTTGAAAACTGCCGACCCTTATGTGARTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACAGACAAACAATCCAAAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27027</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>327620</contig_pos>
        <strand></strand>
        <context>artttttTCG[A/G]GTTTTTCGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGGAGAAAATGAAATTTGAAAACTGCCGACCCTTATGTGATTTTTTTCG</left_flank>
        <right_flank>GTTTTTCGATCTTTTTTGATCAGACAGACAAACAATCCAAAATACGAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTATTTTCAGCACTTACAATGTTGTTGTCTTCAGCCTTAACACTCTAAATCAACGGATACCTAAAAACAAGCTCCCTGAATGTGTACCTATAACCTATTCTTGGTACTTTCGAAAAAACAAACAAACACCCAAGTTTTAGAATTTGAAAAAAATCACATTTTCAGTGTAAAATCGGCAATTTTCAAATTTAATTTCCTTGACTCCTAGGAGGTTTTAGGACTTGAAATTTTTGTTTTATACTCCGAACTATTTGAAATTTCATATTTTTACATTATTGTTTAAAAAATTTACAAACTTGAAAACTTGGGTCCACCCAAAGTGTAGGCGAGCTTTGAAACTTTCCAAAACTTTTCCGGAAAAATGTTTTTTGAAAAAATGTAAAAATAGGAAATTTCCAATAGTTTTGAGTTTAACACAAAATATTTCAAGTCCTATATTCTCCTAGAAGTGGAGAAAATGAAATTTGAAAACTGCCGACCCTTATGTGATTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACAGACAAACAATCCAAAATACGAAAAAAAAATGGAAAAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTGAAAATTTCCTCAGGCCCGGCTCGGCCCGGCCCGGAATTTTACAAGTATGATTTTAGGTGCTTTTTGCGCTATTTGGGCGAAAAAAATCGGAAAAATTCATTAAAAATAGCTTTTGACGCTAAAGATGTATTTTTGGGCAAAATTTGTAGACCTTTTCCGGGTTTTCAGCTATTTTTGAAGATTCTTTTTCGATTTTTCCCCGTTTTTTTTGTCTGAAATATGATGTCTGAAATTTTTTTGGATGATGTTCGTGCGAAGATTACTGTAGATTACTGTAGAAGATTTGTAGTTTTTTTTCCAACAGTTTTAATCTGCATTTTGACGTAATTGCGTTTGCAAAAAAAGAAACTACAAACTACAAGATTTTCTACAGTAA</canonical>
            <polymorphic>ATTATTTTCAGCACTTACAATGTTGTTGTCTTCAGCCTTAACACTCTAAATCAACGGATACCTAAAAACAAGCTCCCTGAATGTGTACCTATAACCTATTCTTGGTACTTTCGAAAAAACAAACAAACACCCAAGTTTTAGAATTTGAAAAAAATCACATTTTCAGTGTAAAATCGGCAATTTTCAAATTTAATTTCCTTGACTCCTAGGAGGTTTTAGGACTTGAAATTTTTGTTTTATACTCCGAACTATTTGAAATTTCATATTTTTACATTATTGTTTAAAAAATTTACAAACTTGAAAACTTGGGTCCACCCAAAGTGTAGGCGAGCTTTGAAACTTTCCAAAACTTTTCCGGAAAAATGTTTTTTGAAAAAATGTAAAAATAGGAAATTTCCAATAGTTTTGAGTTTAACACAAAATATTTCAAGTCCTATATTCTCCTAGAAGTGGAGAAAATGAAATTTGAAAACTGCCGACCCTTATGTGATTTTTTTCGRGTTTTTCGATCTTTTTTGATCAGACAGACAAACAATCCAAAATACGAAAAAAAAATGGAAAAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTGAAAATTTCCTCAGGCCCGGCTCGGCCCGGCCCGGAATTTTACAAGTATGATTTTAGGTGCTTTTTGCGCTATTTGGGCGAAAAAAATCGGAAAAATTCATTAAAAATAGCTTTTGACGCTAAAGATGTATTTTTGGGCAAAATTTGTAGACCTTTTCCGGGTTTTCAGCTATTTTTGAAGATTCTTTTTCGATTTTTCCCCGTTTTTTTTGTCTGAAATATGATGTCTGAAATTTTTTTGGATGATGTTCGTGCGAAGATTACTGTAGATTACTGTAGAAGATTTGTAGTTTTTTTTCCAACAGTTTTAATCTGCATTTTGACGTAATTGCGTTTGCAAAAAAAGAAACTACAAACTACAAGATTTTCTACAGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>386 307 186 112 9</canonical_bands>
                <polymorphic_bands>395 307 186 112</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAACAAACACCCAAGTTTTA</pcr_primer_p1>
		<pcr_primer_p2>CCGGTGTCAAAAATTCTGTA</pcr_primer_p2>
		<pcr_amplicon_size>499</pcr_amplicon_size>
		<canonical_amplicon>CAAACAAACACCCAAGTTTTAGAATTTGAAAAAAATCACATTTTCAGTGTAAAATCGGCAATTTTCAAATTTAATTTCCTTGACTCCTAGGAGGTTTTAGGACTTGAAATTTTTGTTTTATACTCCGAACTATTTGAAATTTCATATTTTTACATTATTGTTTAAAAAATTTACAAACTTGAAAACTTGGGTCCACCCAAAGTGTAGGCGAGCTTTGAAACTTTCCAAAACTTTTCCGGAAAAATGTTTTTTGAAAAAATGTAAAAATAGGAAATTTCCAATAGTTTTGAGTTTAACACAAAATATTTCAAGTCCTATATTCTCCTAGAAGTGGAGAAAATGAAATTTGAAAACTGCCGACCCTTATGTGATTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACAGACAAACAATCCAAAATACGAAAAAAAAATGGAAAAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGG</canonical_amplicon>
		<polymorphic_amplicon>CAAACAAACACCCAAGTTTTAGAATTTGAAAAAAATCACATTTTCAGTGTAAAATCGGCAATTTTCAAATTTAATTTCCTTGACTCCTAGGAGGTTTTAGGACTTGAAATTTTTGTTTTATACTCCGAACTATTTGAAATTTCATATTTTTACATTATTGTTTAAAAAATTTACAAACTTGAAAACTTGGGTCCACCCAAAGTGTAGGCGAGCTTTGAAACTTTCCAAAACTTTTCCGGAAAAATGTTTTTTGAAAAAATGTAAAAATAGGAAATTTCCAATAGTTTTGAGTTTAACACAAAATATTTCAAGTCCTATATTCTCCTAGAAGTGGAGAAAATGAAATTTGAAAACTGCCGACCCTTATGTGATTTTTTTCGRGTTTTTCGATCTTTTTTGATCAGACAGACAAACAATCCAAAATACGAAAAAAAAATGGAAAAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27028</snp_id>
        <super_contig>c002801026.Contig1</super_contig>
        <contig_pos>327901</contig_pos>
        <strand></strand>
        <context>tagacctttt[C/T]cgggttttca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGCTTTTGACGCTAAAGATGTATTTTTGGGCAAAATTTGTAGACCTTTT</left_flank>
        <right_flank>CGGGTTTTCAGCTATTTTTGAAGATTCTTTTTCGATTTTTCCCCGTTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAAAATTTACAAACTTGAAAACTTGGGTCCACCCAAAGTGTAGGCGAGCTTTGAAACTTTCCAAAACTTTTCCGGAAAAATGTTTTTTGAAAAAATGTAAAAATAGGAAATTTCCAATAGTTTTGAGTTTAACACAAAATATTTCAAGTCCTATATTCTCCTAGAAGTGGAGAAAATGAAATTTGAAAACTGCCGACCCTTATGTGATTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACAGACAAACAATCCAAAATACGAAAAAAAAATGGAAAAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTGAAAATTTCCTCAGGCCCGGCTCGGCCCGGCCCGGAATTTTACAAGTATGATTTTAGGTGCTTTTTGCGCTATTTGGGCGAAAAAAATCGGAAAAATTCATTAAAAATAGCTTTTGACGCTAAAGATGTATTTTTGGGCAAAATTTGTAGACCTTTTCCGGGTTTTCAGCTATTTTTGAAGATTCTTTTTCGATTTTTCCCCGTTTTTTTTGTCTGAAATATGATGTCTGAAATTTTTTTGGATGATGTTCGTGCGAAGATTACTGTAGATTACTGTAGAAGATTTGTAGTTTTTTTTCCAACAGTTTTAATCTGCATTTTGACGTAATTGCGTTTGCAAAAAAAGAAACTACAAACTACAAGATTTTCTACAGTAATCTTCGCGAATTTCAGATAAATTTCAGACAAAAATTGTGGAAAATCGAAAAAGATCCTTCAAAAATAGCTGAAAACCTTAAAAAGGTCTAAAAATTTCTCAAAAAATTCAAAAAAAAAATAATTTGGCTTTCGAAAAGTCGCGAAAAATCGTTAAGAATAAGGGGCTGAGCCTATTTTTCAACAGCATATTTCAAATTATGCCAGGAAGGAGACGAAGACTGGGACATTGTCACTTGCAAACTGGTGGAATGGGATAAGAAATGGCTGAAAAAGTACCTTC</canonical>
            <polymorphic>TAAAAAATTTACAAACTTGAAAACTTGGGTCCACCCAAAGTGTAGGCGAGCTTTGAAACTTTCCAAAACTTTTCCGGAAAAATGTTTTTTGAAAAAATGTAAAAATAGGAAATTTCCAATAGTTTTGAGTTTAACACAAAATATTTCAAGTCCTATATTCTCCTAGAAGTGGAGAAAATGAAATTTGAAAACTGCCGACCCTTATGTGATTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACAGACAAACAATCCAAAATACGAAAAAAAAATGGAAAAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTGAAAATTTCCTCAGGCCCGGCTCGGCCCGGCCCGGAATTTTACAAGTATGATTTTAGGTGCTTTTTGCGCTATTTGGGCGAAAAAAATCGGAAAAATTCATTAAAAATAGCTTTTGACGCTAAAGATGTATTTTTGGGCAAAATTTGTAGACCTTTTYCGGGTTTTCAGCTATTTTTGAAGATTCTTTTTCGATTTTTCCCCGTTTTTTTTGTCTGAAATATGATGTCTGAAATTTTTTTGGATGATGTTCGTGCGAAGATTACTGTAGATTACTGTAGAAGATTTGTAGTTTTTTTTCCAACAGTTTTAATCTGCATTTTGACGTAATTGCGTTTGCAAAAAAAGAAACTACAAACTACAAGATTTTCTACAGTAATCTTCGCGAATTTCAGATAAATTTCAGACAAAAATTGTGGAAAATCGAAAAAGATCCTTCAAAAATAGCTGAAAACCTTAAAAAGGTCTAAAAATTTCTCAAAAAATTCAAAAAAAAAATAATTTGGCTTTCGAAAAGTCGCGAAAAATCGTTAAGAATAAGGGGCTGAGCCTATTTTTCAACAGCATATTTCAAATTATGCCAGGAAGGAGACGAAGACTGGGACATTGTCACTTGCAAACTGGTGGAATGGGATAAGAAATGGCTGAAAAAGTACCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>499 335 127 24 10 5</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>421 335 127 78 24 10 5</canonical_bands>
                <polymorphic_bands>548 335 78 24 10 5</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 260 126 74 25 10 5</canonical_bands>
                <polymorphic_bands>626 260 74 25 10 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCTTTTGACGCTAAAGATG</pcr_primer_p1>
		<pcr_primer_p2>GAAATATGCTGTTGAAAAATAGG</pcr_primer_p2>
		<pcr_amplicon_size>462</pcr_amplicon_size>
		<canonical_amplicon>AGCTTTTGACGCTAAAGATGTATTTTTGGGCAAAATTTGTAGACCTTTTCCGGGTTTTCAGCTATTTTTGAAGATTCTTTTTCGATTTTTCCCCGTTTTTTTTGTCTGAAATATGATGTCTGAAATTTTTTTGGATGATGTTCGTGCGAAGATTACTGTAGATTACTGTAGAAGATTTGTAGTTTTTTTTCCAACAGTTTTAATCTGCATTTTGACGTAATTGCGTTTGCAAAAAAAGAAACTACAAACTACAAGATTTTCTACAGTAATCTTCGCGAATTTCAGATAAATTTCAGACAAAAATTGTGGAAAATCGAAAAAGATCCTTCAAAAATAGCTGAAAACCTTAAAAAGGTCTAAAAATTTCTCAAAAAATTCAAAAAAAAAATAATTTGGCTTTCGAAAAGTCGCGAAAAATCGTTAAGAATAAGGGGCTGAGCCTATTTTTCAACAGCATATTTC</canonical_amplicon>
		<polymorphic_amplicon>AGCTTTTGACGCTAAAGATGTATTTTTGGGCAAAATTTGTAGACCTTTTYCGGGTTTTCAGCTATTTTTGAAGATTCTTTTTCGATTTTTCCCCGTTTTTTTTGTCTGAAATATGATGTCTGAAATTTTTTTGGATGATGTTCGTGCGAAGATTACTGTAGATTACTGTAGAAGATTTGTAGTTTTTTTTCCAACAGTTTTAATCTGCATTTTGACGTAATTGCGTTTGCAAAAAAAGAAACTACAAACTACAAGATTTTCTACAGTAATCTTCGCGAATTTCAGATAAATTTCAGACAAAAATTGTGGAAAATCGAAAAAGATCCTTCAAAAATAGCTGAAAACCTTAAAAAGGTCTAAAAATTTCTCAAAAAATTCAAAAAAAAAATAATTTGGCTTTCGAAAAGTCGCGAAAAATCGTTAAGAATAAGGGGCTGAGCCTATTTTTCAACAGCATATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27029</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>24997</contig_pos>
        <strand>+</strand>
        <context>GTTCGAATCA[A/G]AACTGTTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGCCTAACAAACGCCCGCACTGTCGAGTATTAGCGCGTAGTTCGAATCA</left_flank>
        <right_flank>AACTGTTTTCTCTGCTCTTTTCTATAAAACTATTTTATTTTCAGAATGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAAACAATAAATTAAAGGCGCACAGCTTATAAAAAACAAAGTGTCTTACCACGAAAATGAAAGAAACATCACAGCCGACAGAAAAAGTGTCCCGCAACGATTAGAGGATTACTGTACCATTCAAATGTTTTAATCGACTTTTCGCTGTTCGTTTCGCCAGCTGCTCAAGGGAGTTTGTTTTCCGGCCGTTCTGGAATAAGTACAGGCTCAAATCCGTCGAGCCATCGCCCGGCAAAGACGACGAACTCATTTGATTTGCATGCTCTCAAAGAAATGTAGGTTTTTGTTCGGGAAAAAGTGATGAATGTCTTTCTTGCTCATTATAAAGAAGAAAACATTCGTATTTCTCGCTTAAAGTTGAGTTTTTGTGTTCGTCTACCAGCCCTTCACAGCGAACGGCTGCACTTTCGTTGCATTACGCTCTGGCGGACTAGTTTTTTTCCGCACGGCCTAACAAACGCCCGCACTGTCGAGTATTAGCGCGTAGTTCGAATCAAAACTGTTTTCTCTGCTCTTTTCTATAAAACTATTTTATTTTCAGAATGTCAGCACCGAAAAAACGAAAAAGTGATATTCATGTAAGTTTGTCGTCGAAAATTTCACCAAGGAACTAAAATTTTGCAGATCGACCTCTGCGCAAGAGATGAAGCGGATCACAAGTCGAAGAAAGAGAAGACCAATTGGCATCATGAGGTTCTAAATTAATCATCACCTCGTTTACTTAAAATCGCTTTTTCAGGAACAAGTCGAGAATCGACGAGGCTCGTTTCTCAAAGGAATCATCAACAAAGTGAAAAGCACAGCGTCTTTGAAGACTTTGAACAGAGGACCATCAACATCGAAGCTCGAAACGATAGCTAATGACACGCAGTTATCAATCAAGAGCGAGTCGAGTGTTACCTCTGTCGAATCAGGTCCAAGCACTCTTGTTCCGAATATTGCCAAAAATGCGCAACTCCGATCATTCGTTAATCGAGATTCGTTCACACCCGTTCCG</canonical>
            <polymorphic>AAGAAAACAATAAATTAAAGGCGCACAGCTTATAAAAAACAAAGTGTCTTACCACGAAAATGAAAGAAACATCACAGCCGACAGAAAAAGTGTCCCGCAACGATTAGAGGATTACTGTACCATTCAAATGTTTTAATCGACTTTTCGCTGTTCGTTTCGCCAGCTGCTCAAGGGAGTTTGTTTTCCGGCCGTTCTGGAATAAGTACAGGCTCAAATCCGTCGAGCCATCGCCCGGCAAAGACGACGAACTCATTTGATTTGCATGCTCTCAAAGAAATGTAGGTTTTTGTTCGGGAAAAAGTGATGAATGTCTTTCTTGCTCATTATAAAGAAGAAAACATTCGTATTTCTCGCTTAAAGTTGAGTTTTTGTGTTCGTCTACCAGCCCTTCACAGCGAACGGCTGCACTTTCGTTGCATTACGCTCTGGCGGACTAGTTTTTTTCCGCACGGCCTAACAAACGCCCGCACTGTCGAGTATTAGCGCGTAGTTCGAATCARAACTGTTTTCTCTGCTCTTTTCTATAAAACTATTTTATTTTCAGAATGTCAGCACCGAAAAAACGAAAAAGTGATATTCATGTAAGTTTGTCGTCGAAAATTTCACCAAGGAACTAAAATTTTGCAGATCGACCTCTGCGCAAGAGATGAAGCGGATCACAAGTCGAAGAAAGAGAAGACCAATTGGCATCATGAGGTTCTAAATTAATCATCACCTCGTTTACTTAAAATCGCTTTTTCAGGAACAAGTCGAGAATCGACGAGGCTCGTTTCTCAAAGGAATCATCAACAAAGTGAAAAGCACAGCGTCTTTGAAGACTTTGAACAGAGGACCATCAACATCGAAGCTCGAAACGATAGCTAATGACACGCAGTTATCAATCAAGAGCGAGTCGAGTGTTACCTCTGTCGAATCAGGTCCAAGCACTCTTGTTCCGAATATTGCCAAAAATGCGCAACTCCGATCATTCGTTAATCGAGATTCGTTCACACCCGTTCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATGTCTTTCTTGCTCATTAT</pcr_primer_p1>
		<pcr_primer_p2>TGCTGACATTCTGAAAATAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAATGTCTTTCTTGCTCATTATAAAGAAGAAAACATTCGTATTTCTCGCTTAAAGTTGAGTTTTTGTGTTCGTCTACCAGCCCTTCACAGCGAACGGCTGCACTTTCGTTGCATTACGCTCTGGCGGACTAGTTTTTTTCCGCACGGCCTAACAAACGCCCGCACTGTCGAGTATTAGCGCGTAGTTCGAATCAAAACTGTTTTCTCTGCTCTTTTCTATAAAACTATTTTATTTTCAGAATGTCAGCA</canonical_amplicon>
		<polymorphic_amplicon>TGAATGTCTTTCTTGCTCATTATAAAGAAGAAAACATTCGTATTTCTCGCTTAAAGTTGAGTTTTTGTGTTCGTCTACCAGCCCTTCACAGCGAACGGCTGCACTTTCGTTGCATTACGCTCTGGCGGACTAGTTTTTTTCCGCACGGCCTAACAAACGCCCGCACTGTCGAGTATTAGCGCGTAGTTCGAATCARAACTGTTTTCTCTGCTCTTTTCTATAAAACTATTTTATTTTCAGAATGTCAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27030</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>78879</contig_pos>
        <strand>+</strand>
        <context>GTTTTGAAAT[C/G]GAATCATACA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGATATTTATTGGGTTGTGTTAAAGAAAAGAATTTGACTCGTTTTGAAAT</left_flank>
        <right_flank>GAATCATACAAACAATATTAAAGAAAAAAAAGAATATCCGGCTAGAATAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCGGCCAGTTCACTTTGTGATCCAATCTCTTTCTTTCCATGATTCGAACTCTTTCTTTTTTCTCTCGATTCGATTTTTCCCCCATTCAAAGTTCTGGTTTGATGTTATAGACCAATTATTTTCCAATTTCTGTGTCCCGAATACGAGGTCTCTTCGTTTTCTTTTCCCCACCCAAACTATGATTCTCCCTCTCTCTTGATTGTTTCTAATTTTTATAATATTTATATTTCAAAAGCAGTCCCAACCAACATTTTCGAACGAATTACGAGTCTCTCCTGATTCTAGTATTTTTACTGTGAGACACTTCTCTCTTCTCCTTCTTCTTCTACACACTTTTTAAGATTAATTTATCTTAGCCTCTCTGCTCTTTCCAATTGCAACGAACATAATTTATTTTGTTTTTCAAAAAACCCCTACCAAGAAGTGTCTACTGGAGGTGAAATAAATAGATATTTATTGGGTTGTGTTAAAGAAAAGAATTTGACTCGTTTTGAAATGGAATCATACAAACAATATTAAAGAAAAAAAAGAATATCCGGCTAGAATAGTTGACTCTGTGAGAGCGATGATAGTGTTAAGAATAAATAAATGCAAAGAATTGCATGGTACAAATTAGAGAGTTGGTCTAACATTTCTTTCATTGGTTATTCCTTTCATTGAATTCTTTCAAAAGTATCTCGATAACTTCGGAATGCTTCAGCCCAGCGTCACTGTAATCCCAGTAGTGCTTCTCGGAGAATTCTCGGAATCCTTCTGGATGCTTCGTGAAGTTACGACGGACGGCTGGAGGTGATGTTGTTAGTTTCGAGGCAGTGGCTGACACAGATTTGTTCCTATTCGGATCTTCGATACGGATTCTCGAATTGGTTTTGCGACAGTAGCGATAGAGAATGAAGCGCCCGAGACATCTTCCACAAGCCTTTCGAGAAGTATCCAGAGATTTTGACTGTCGTTTTATTCTGAAAAAAATTGTCATCCACAACACGATTTCTCAATTA</canonical>
            <polymorphic>CTCCGGCCAGTTCACTTTGTGATCCAATCTCTTTCTTTCCATGATTCGAACTCTTTCTTTTTTCTCTCGATTCGATTTTTCCCCCATTCAAAGTTCTGGTTTGATGTTATAGACCAATTATTTTCCAATTTCTGTGTCCCGAATACGAGGTCTCTTCGTTTTCTTTTCCCCACCCAAACTATGATTCTCCCTCTCTCTTGATTGTTTCTAATTTTTATAATATTTATATTTCAAAAGCAGTCCCAACCAACATTTTCGAACGAATTACGAGTCTCTCCTGATTCTAGTATTTTTACTGTGAGACACTTCTCTCTTCTCCTTCTTCTTCTACACACTTTTTAAGATTAATTTATCTTAGCCTCTCTGCTCTTTCCAATTGCAACGAACATAATTTATTTTGTTTTTCAAAAAACCCCTACCAAGAAGTGTCTACTGGAGGTGAAATAAATAGATATTTATTGGGTTGTGTTAAAGAAAAGAATTTGACTCGTTTTGAAATSGAATCATACAAACAATATTAAAGAAAAAAAAGAATATCCGGCTAGAATAGTTGACTCTGTGAGAGCGATGATAGTGTTAAGAATAAATAAATGCAAAGAATTGCATGGTACAAATTAGAGAGTTGGTCTAACATTTCTTTCATTGGTTATTCCTTTCATTGAATTCTTTCAAAAGTATCTCGATAACTTCGGAATGCTTCAGCCCAGCGTCACTGTAATCCCAGTAGTGCTTCTCGGAGAATTCTCGGAATCCTTCTGGATGCTTCGTGAAGTTACGACGGACGGCTGGAGGTGATGTTGTTAGTTTCGAGGCAGTGGCTGACACAGATTTGTTCCTATTCGGATCTTCGATACGGATTCTCGAATTGGTTTTGCGACAGTAGCGATAGAGAATGAAGCGCCCGAGACATCTTCCACAAGCCTTTCGAGAAGTATCCAGAGATTTTGACTGTCGTTTTATTCTGAAAAAAATTGTCATCCACAACACGATTTCTCAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTCTCTTCTCCTTCTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>GTCAACTATTCTAGCCGGATATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCTCTCTTCTCCTTCTTCTTCTACACACTTTTTAAGATTAATTTATCTTAGCCTCTCTGCTCTTTCCAATTGCAACGAACATAATTTATTTTGTTTTTCAAAAAACCCCTACCAAGAAGTGTCTACTGGAGGTGAAATAAATAGATATTTATTGGGTTGTGTTAAAGAAAAGAATTTGACTCGTTTTGAAATGGAATCATACAAACAATATTAAAGAAAAAAAAGAATATCCGGCTAGAATAGTTGAC</canonical_amplicon>
		<polymorphic_amplicon>CTTCTCTCTTCTCCTTCTTCTTCTACACACTTTTTAAGATTAATTTATCTTAGCCTCTCTGCTCTTTCCAATTGCAACGAACATAATTTATTTTGTTTTTCAAAAAACCCCTACCAAGAAGTGTCTACTGGAGGTGAAATAAATAGATATTTATTGGGTTGTGTTAAAGAAAAGAATTTGACTCGTTTTGAAATSGAATCATACAAACAATATTAAAGAAAAAAAAGAATATCCGGCTAGAATAGTTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27031</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>78964</contig_pos>
        <strand>+</strand>
        <context>TGTTAAGAAT[A/G]AATAAATGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATCCGGCTAGAATAGTTGACTCTGTGAGAGCGATGATAGTGTTAAGAAT</left_flank>
        <right_flank>AATAAATGCAAAGAATTGCATGGTACAAATTAGAGAGTTGGTCTAACATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCAAAGTTCTGGTTTGATGTTATAGACCAATTATTTTCCAATTTCTGTGTCCCGAATACGAGGTCTCTTCGTTTTCTTTTCCCCACCCAAACTATGATTCTCCCTCTCTCTTGATTGTTTCTAATTTTTATAATATTTATATTTCAAAAGCAGTCCCAACCAACATTTTCGAACGAATTACGAGTCTCTCCTGATTCTAGTATTTTTACTGTGAGACACTTCTCTCTTCTCCTTCTTCTTCTACACACTTTTTAAGATTAATTTATCTTAGCCTCTCTGCTCTTTCCAATTGCAACGAACATAATTTATTTTGTTTTTCAAAAAACCCCTACCAAGAAGTGTCTACTGGAGGTGAAATAAATAGATATTTATTGGGTTGTGTTAAAGAAAAGAATTTGACTCGTTTTGAAATGGAATCATACAAACAATATTAAAGAAAAAAAAGAATATCCGGCTAGAATAGTTGACTCTGTGAGAGCGATGATAGTGTTAAGAATAAATAAATGCAAAGAATTGCATGGTACAAATTAGAGAGTTGGTCTAACATTTCTTTCATTGGTTATTCCTTTCATTGAATTCTTTCAAAAGTATCTCGATAACTTCGGAATGCTTCAGCCCAGCGTCACTGTAATCCCAGTAGTGCTTCTCGGAGAATTCTCGGAATCCTTCTGGATGCTTCGTGAAGTTACGACGGACGGCTGGAGGTGATGTTGTTAGTTTCGAGGCAGTGGCTGACACAGATTTGTTCCTATTCGGATCTTCGATACGGATTCTCGAATTGGTTTTGCGACAGTAGCGATAGAGAATGAAGCGCCCGAGACATCTTCCACAAGCCTTTCGAGAAGTATCCAGAGATTTTGACTGTCGTTTTATTCTGAAAAAAATTGTCATCCACAACACGATTTCTCAATTACACAACTCACTCCACAGTACATGTATCATTCTCACAGACGTAGTAGAACTTGGCTTCAATCTCATAATCATGACATCTTTCGATA</canonical>
            <polymorphic>ATTCAAAGTTCTGGTTTGATGTTATAGACCAATTATTTTCCAATTTCTGTGTCCCGAATACGAGGTCTCTTCGTTTTCTTTTCCCCACCCAAACTATGATTCTCCCTCTCTCTTGATTGTTTCTAATTTTTATAATATTTATATTTCAAAAGCAGTCCCAACCAACATTTTCGAACGAATTACGAGTCTCTCCTGATTCTAGTATTTTTACTGTGAGACACTTCTCTCTTCTCCTTCTTCTTCTACACACTTTTTAAGATTAATTTATCTTAGCCTCTCTGCTCTTTCCAATTGCAACGAACATAATTTATTTTGTTTTTCAAAAAACCCCTACCAAGAAGTGTCTACTGGAGGTGAAATAAATAGATATTTATTGGGTTGTGTTAAAGAAAAGAATTTGACTCGTTTTGAAATGGAATCATACAAACAATATTAAAGAAAAAAAAGAATATCCGGCTAGAATAGTTGACTCTGTGAGAGCGATGATAGTGTTAAGAATRAATAAATGCAAAGAATTGCATGGTACAAATTAGAGAGTTGGTCTAACATTTCTTTCATTGGTTATTCCTTTCATTGAATTCTTTCAAAAGTATCTCGATAACTTCGGAATGCTTCAGCCCAGCGTCACTGTAATCCCAGTAGTGCTTCTCGGAGAATTCTCGGAATCCTTCTGGATGCTTCGTGAAGTTACGACGGACGGCTGGAGGTGATGTTGTTAGTTTCGAGGCAGTGGCTGACACAGATTTGTTCCTATTCGGATCTTCGATACGGATTCTCGAATTGGTTTTGCGACAGTAGCGATAGAGAATGAAGCGCCCGAGACATCTTCCACAAGCCTTTCGAGAAGTATCCAGAGATTTTGACTGTCGTTTTATTCTGAAAAAAATTGTCATCCACAACACGATTTCTCAATTACACAACTCACTCCACAGTACATGTATCATTCTCACAGACGTAGTAGAACTTGGCTTCAATCTCATAATCATGACATCTTTCGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTGTCTACTGGAGGTGAAATA</pcr_primer_p1>
		<pcr_primer_p2>GAAAGAATTCAATGAAAGGAATA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAGTGTCTACTGGAGGTGAAATAAATAGATATTTATTGGGTTGTGTTAAAGAAAAGAATTTGACTCGTTTTGAAATGGAATCATACAAACAATATTAAAGAAAAAAAAGAATATCCGGCTAGAATAGTTGACTCTGTGAGAGCGATGATAGTGTTAAGAATAAATAAATGCAAAGAATTGCATGGTACAAATTAGAGAGTTGGTCTAACATTTCTTTCATTGGTTATTCCTTTCATTGAATTCTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAGTGTCTACTGGAGGTGAAATAAATAGATATTTATTGGGTTGTGTTAAAGAAAAGAATTTGACTCGTTTTGAAATGGAATCATACAAACAATATTAAAGAAAAAAAAGAATATCCGGCTAGAATAGTTGACTCTGTGAGAGCGATGATAGTGTTAAGAATRAATAAATGCAAAGAATTGCATGGTACAAATTAGAGAGTTGGTCTAACATTTCTTTCATTGGTTATTCCTTTCATTGAATTCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27032</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>78997</contig_pos>
        <strand>+</strand>
        <context>GTACAAATTA[G/T]AGAGTTGGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGATAGTGTTAAGAATAAATAAATGCAAAGAATTGCATGGTACAAATTA</left_flank>
        <right_flank>AGAGTTGGTCTAACATTTCTTTCATTGGTTATTCCTTTCATTGAATTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTTCCAATTTCTGTGTCCCGAATACGAGGTCTCTTCGTTTTCTTTTCCCCACCCAAACTATGATTCTCCCTCTCTCTTGATTGTTTCTAATTTTTATAATATTTATATTTCAAAAGCAGTCCCAACCAACATTTTCGAACGAATTACGAGTCTCTCCTGATTCTAGTATTTTTACTGTGAGACACTTCTCTCTTCTCCTTCTTCTTCTACACACTTTTTAAGATTAATTTATCTTAGCCTCTCTGCTCTTTCCAATTGCAACGAACATAATTTATTTTGTTTTTCAAAAAACCCCTACCAAGAAGTGTCTACTGGAGGTGAAATAAATAGATATTTATTGGGTTGTGTTAAAGAAAAGAATTTGACTCGTTTTGAAATGGAATCATACAAACAATATTAAAGAAAAAAAAGAATATCCGGCTAGAATAGTTGACTCTGTGAGAGCGATGATAGTGTTAAGAATAAATAAATGCAAAGAATTGCATGGTACAAATTAGAGAGTTGGTCTAACATTTCTTTCATTGGTTATTCCTTTCATTGAATTCTTTCAAAAGTATCTCGATAACTTCGGAATGCTTCAGCCCAGCGTCACTGTAATCCCAGTAGTGCTTCTCGGAGAATTCTCGGAATCCTTCTGGATGCTTCGTGAAGTTACGACGGACGGCTGGAGGTGATGTTGTTAGTTTCGAGGCAGTGGCTGACACAGATTTGTTCCTATTCGGATCTTCGATACGGATTCTCGAATTGGTTTTGCGACAGTAGCGATAGAGAATGAAGCGCCCGAGACATCTTCCACAAGCCTTTCGAGAAGTATCCAGAGATTTTGACTGTCGTTTTATTCTGAAAAAAATTGTCATCCACAACACGATTTCTCAATTACACAACTCACTCCACAGTACATGTATCATTCTCACAGACGTAGTAGAACTTGGCTTCAATCTCATAATCATGACATCTTTCGATAAACGGCAATGACTTGAAAGTAGACGAGCATCGA</canonical>
            <polymorphic>TATTTTCCAATTTCTGTGTCCCGAATACGAGGTCTCTTCGTTTTCTTTTCCCCACCCAAACTATGATTCTCCCTCTCTCTTGATTGTTTCTAATTTTTATAATATTTATATTTCAAAAGCAGTCCCAACCAACATTTTCGAACGAATTACGAGTCTCTCCTGATTCTAGTATTTTTACTGTGAGACACTTCTCTCTTCTCCTTCTTCTTCTACACACTTTTTAAGATTAATTTATCTTAGCCTCTCTGCTCTTTCCAATTGCAACGAACATAATTTATTTTGTTTTTCAAAAAACCCCTACCAAGAAGTGTCTACTGGAGGTGAAATAAATAGATATTTATTGGGTTGTGTTAAAGAAAAGAATTTGACTCGTTTTGAAATGGAATCATACAAACAATATTAAAGAAAAAAAAGAATATCCGGCTAGAATAGTTGACTCTGTGAGAGCGATGATAGTGTTAAGAATAAATAAATGCAAAGAATTGCATGGTACAAATTAKAGAGTTGGTCTAACATTTCTTTCATTGGTTATTCCTTTCATTGAATTCTTTCAAAAGTATCTCGATAACTTCGGAATGCTTCAGCCCAGCGTCACTGTAATCCCAGTAGTGCTTCTCGGAGAATTCTCGGAATCCTTCTGGATGCTTCGTGAAGTTACGACGGACGGCTGGAGGTGATGTTGTTAGTTTCGAGGCAGTGGCTGACACAGATTTGTTCCTATTCGGATCTTCGATACGGATTCTCGAATTGGTTTTGCGACAGTAGCGATAGAGAATGAAGCGCCCGAGACATCTTCCACAAGCCTTTCGAGAAGTATCCAGAGATTTTGACTGTCGTTTTATTCTGAAAAAAATTGTCATCCACAACACGATTTCTCAATTACACAACTCACTCCACAGTACATGTATCATTCTCACAGACGTAGTAGAACTTGGCTTCAATCTCATAATCATGACATCTTTCGATAAACGGCAATGACTTGAAAGTAGACGAGCATCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAGCGATGATAGTGTTAAGAA</pcr_primer_p1>
		<pcr_primer_p2>CTCGAAACTAACAACATCACCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAGAGCGATGATAGTGTTAAGAATAAATAAATGCAAAGAATTGCATGGTACAAATTAGAGAGTTGGTCTAACATTTCTTTCATTGGTTATTCCTTTCATTGAATTCTTTCAAAAGTATCTCGATAACTTCGGAATGCTTCAGCCCAGCGTCACTGTAATCCCAGTAGTGCTTCTCGGAGAATTCTCGGAATCCTTCTGGATGCTTCGTGAAGTTACGACGGACGGCTGGAGGTGATGTTGTTAGTTTCGAG</canonical_amplicon>
		<polymorphic_amplicon>GAGAGCGATGATAGTGTTAAGAATAAATAAATGCAAAGAATTGCATGGTACAAATTAKAGAGTTGGTCTAACATTTCTTTCATTGGTTATTCCTTTCATTGAATTCTTTCAAAAGTATCTCGATAACTTCGGAATGCTTCAGCCCAGCGTCACTGTAATCCCAGTAGTGCTTCTCGGAGAATTCTCGGAATCCTTCTGGATGCTTCGTGAAGTTACGACGGACGGCTGGAGGTGATGTTGTTAGTTTCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27033</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>91179</contig_pos>
        <strand>+</strand>
        <context>AAAAATGAGA[C/T]AAACGAGTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAACAGCCTTCCAGCCAGTTATTCGATAAACTTGAAGAAAAATGAGA</left_flank>
        <right_flank>AAACGAGTTGGCGGCTGATTGGGAAACAAAATAATTCAAACTTCGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCGAAGTTCCTGCATTTCCAGCTGTATTGCCACCGAACAAAGAGCTACTATTTTGTGTTGTAGTCGTTGAAGCTCCGAATAGAGATCTGTTGGCATTGCTCTGGGCTCCAAATAGTGAACTTTGGTTGCTTTGCGTTTGTGGAGAGCCTGAAACTATTTAATGAAAATAATTCGAAAAAACCTATCCTTACCGAAAAGATTAGATGTGTTGTTTGTAGTATTGCCGAAAAGTGAGCCTGCGGGCTTCTGTGCATTTCCGAATAAACTAGAGGAGGTGGTTTGCTGGTTTGCATTTTGTCCGAACAGGCCTTTGTTTTGATTATTTTGCCCGAAGAGCCCACTCCCGCTACTGGATCCAAAACTCGAAGAACCGAATGACTTGTTCTGACCGAACATTTTGGCTGAAAGAATTAACTCAATGAGAAACGATCGGACATAAAAATTACAAAAAAACAGCCTTCCAGCCAGTTATTCGATAAACTTGAAGAAAAATGAGACAAACGAGTTGGCGGCTGATTGGGAAACAAAATAATTCAAACTTCGAAAAAAGACGGAACGAGGGAATCCAAAAATTGGCATCGGAGCGCGCTTACAACACTACATCACGGTTGCTCTGCGTCCCTTCGTTTAGCACACTCTCTCGCTGCGCAGCCGACTTTGGACAGCTCGCTTCGTCTCTATTTTCCCGCAATTTCGTGGCCTTTCCTGGCTTTTATGTACAAACCAGCTTTGCGAACTTGTTACGATTCATATTACGAATAACCCAAAACTATTTGTTTCACACAATTTTTCTATTTAGACATTCTTGAAATGACATAACAAGTATGGGTAACACAATACTGACAGGACGCTCGAATGCGATTGCTCCGATAATTAGTGCAGAAGACGCCAGAACTCATAGTAAAACTGAAAAACAATGGTTGAAATTATGATGTTTGAATTTTCAGTAACCGAAGAAGAGTATCGACGGATTCGGCAGGCATTCCAGAGATTTAAGA</canonical>
            <polymorphic>ACTCGAAGTTCCTGCATTTCCAGCTGTATTGCCACCGAACAAAGAGCTACTATTTTGTGTTGTAGTCGTTGAAGCTCCGAATAGAGATCTGTTGGCATTGCTCTGGGCTCCAAATAGTGAACTTTGGTTGCTTTGCGTTTGTGGAGAGCCTGAAACTATTTAATGAAAATAATTCGAAAAAACCTATCCTTACCGAAAAGATTAGATGTGTTGTTTGTAGTATTGCCGAAAAGTGAGCCTGCGGGCTTCTGTGCATTTCCGAATAAACTAGAGGAGGTGGTTTGCTGGTTTGCATTTTGTCCGAACAGGCCTTTGTTTTGATTATTTTGCCCGAAGAGCCCACTCCCGCTACTGGATCCAAAACTCGAAGAACCGAATGACTTGTTCTGACCGAACATTTTGGCTGAAAGAATTAACTCAATGAGAAACGATCGGACATAAAAATTACAAAAAAACAGCCTTCCAGCCAGTTATTCGATAAACTTGAAGAAAAATGAGAYAAACGAGTTGGCGGCTGATTGGGAAACAAAATAATTCAAACTTCGAAAAAAGACGGAACGAGGGAATCCAAAAATTGGCATCGGAGCGCGCTTACAACACTACATCACGGTTGCTCTGCGTCCCTTCGTTTAGCACACTCTCTCGCTGCGCAGCCGACTTTGGACAGCTCGCTTCGTCTCTATTTTCCCGCAATTTCGTGGCCTTTCCTGGCTTTTATGTACAAACCAGCTTTGCGAACTTGTTACGATTCATATTACGAATAACCCAAAACTATTTGTTTCACACAATTTTTCTATTTAGACATTCTTGAAATGACATAACAAGTATGGGTAACACAATACTGACAGGACGCTCGAATGCGATTGCTCCGATAATTAGTGCAGAAGACGCCAGAACTCATAGTAAAACTGAAAAACAATGGTTGAAATTATGATGTTTGAATTTTCAGTAACCGAAGAAGAGTATCGACGGATTCGGCAGGCATTCCAGAGATTTAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCTGAAAGAATTAACTCAATG</pcr_primer_p1>
		<pcr_primer_p2>AGCGAGAGAGTGTGCTAAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGCTGAAAGAATTAACTCAATGAGAAACGATCGGACATAAAAATTACAAAAAAACAGCCTTCCAGCCAGTTATTCGATAAACTTGAAGAAAAATGAGACAAACGAGTTGGCGGCTGATTGGGAAACAAAATAATTCAAACTTCGAAAAAAGACGGAACGAGGGAATCCAAAAATTGGCATCGGAGCGCGCTTACAACACTACATCACGGTTGCTCTGCGTCCCTTCGTTTAGCACACTCTCTCGCT</canonical_amplicon>
		<polymorphic_amplicon>GGCTGAAAGAATTAACTCAATGAGAAACGATCGGACATAAAAATTACAAAAAAACAGCCTTCCAGCCAGTTATTCGATAAACTTGAAGAAAAATGAGAYAAACGAGTTGGCGGCTGATTGGGAAACAAAATAATTCAAACTTCGAAAAAAGACGGAACGAGGGAATCCAAAAATTGGCATCGGAGCGCGCTTACAACACTACATCACGGTTGCTCTGCGTCCCTTCGTTTAGCACACTCTCTCGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27034</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>93745</contig_pos>
        <strand>+</strand>
        <context>CGGCGAAGAA[A/G]AAGAACATCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAACGATTGAGTATGCGAAGCTGTTGAGAGAGATGTGGGCGGCGAAGAA</left_flank>
        <right_flank>AAGAACATCGCTCCGAACGATTTCAATGACGCCATCCGAATGAACTCGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAAGTGGTCAAAGAGAATGAGGAAGGAAATGTTCTTCTGGATGATGGAAATCAAAACTTACACCAGCTGTATACGGCACTCGGAAAGACGAAGAAAGTGAATAAAATGAAGTTGCTTCTAGAAGTCCGAGAAAGAGGAACAGGAGTTTGGCCAGAGGAATTGAGAGCTTCTCTTTCCGGGAAACAAATCACTGCGGCTTCCACACTATCTTCTTCAAATGCACAGTTGTCAGGTAATTTTTTTCGTAAAATTTTGCCCTCAACCCCAGAAAGATGATTATACAGGTCGTCCAGGAGCTGTTGGTCTCGTGAATTACGGTAACTTCTGCTATCGAAACGCTGGAATCCAGTGCCTCGCGAGAGTGTCTCCATTGACACAATACTTGCTGGAAGATGAGCATTTGGATGAGTTGAAGAAGGCAAATACGAAAAGAAGGGATGCTGTGGAGACAACGATTGAGTATGCGAAGCTGTTGAGAGAGATGTGGGCGGCGAAGAAGAAGAACATCGCTCCGAACGATTTCAATGACGCCATCCGAATGAACTCGGACATGTTCGAGTGTAGTGAGCAGCATGACTGTCAGGAGTTCGTCGCATTCCTTCTCGATCAGCTTCATACTTCAATGTATGAAGCCAATAAAACTCTCCATCCTCCACCACCTGCAAAAGACCCCAAGAAAGAAGAGGAAAATCATGAAATAGAAGAAACTGACGAAGAAAAAGCAGAAAGATCATGGACAGAGTATGAAAAACAGAACGAATCTCTTGTCACACAACTCTTCACCGGACAGCTACGCTCTCGTCTAGTCTGCAGAACATGTCAATCCAGTTCGAGCGTCTTTGAGCCATTTACCTCACTTTCGCTGCCAATTGGGTTTGAAGATGTCGACTTGTATCAAGTTATTGGTAAGATTTCATATAGCAGCTTATATCAATTCATTGTTTCTCCAGTCGTCCATCGAGATGGTAGGATTCCTCGTCGATATGGTTTCAGACTGTC</canonical>
            <polymorphic>GCAAGTGGTCAAAGAGAATGAGGAAGGAAATGTTCTTCTGGATGATGGAAATCAAAACTTACACCAGCTGTATACGGCACTCGGAAAGACGAAGAAAGTGAATAAAATGAAGTTGCTTCTAGAAGTCCGAGAAAGAGGAACAGGAGTTTGGCCAGAGGAATTGAGAGCTTCTCTTTCCGGGAAACAAATCACTGCGGCTTCCACACTATCTTCTTCAAATGCACAGTTGTCAGGTAATTTTTTTCGTAAAATTTTGCCCTCAACCCCAGAAAGATGATTATACAGGTCGTCCAGGAGCTGTTGGTCTCGTGAATTACGGTAACTTCTGCTATCGAAACGCTGGAATCCAGTGCCTCGCGAGAGTGTCTCCATTGACACAATACTTGCTGGAAGATGAGCATTTGGATGAGTTGAAGAAGGCAAATACGAAAAGAAGGGATGCTGTGGAGACAACGATTGAGTATGCGAAGCTGTTGAGAGAGATGTGGGCGGCGAAGAARAAGAACATCGCTCCGAACGATTTCAATGACGCCATCCGAATGAACTCGGACATGTTCGAGTGTAGTGAGCAGCATGACTGTCAGGAGTTCGTCGCATTCCTTCTCGATCAGCTTCATACTTCAATGTATGAAGCCAATAAAACTCTCCATCCTCCACCACCTGCAAAAGACCCCAAGAAAGAAGAGGAAAATCATGAAATAGAAGAAACTGACGAAGAAAAAGCAGAAAGATCATGGACAGAGTATGAAAAACAGAACGAATCTCTTGTCACACAACTCTTCACCGGACAGCTACGCTCTCGTCTAGTCTGCAGAACATGTCAATCCAGTTCGAGCGTCTTTGAGCCATTTACCTCACTTTCGCTGCCAATTGGGTTTGAAGATGTCGACTTGTATCAAGTTATTGGTAAGATTTCATATAGCAGCTTATATCAATTCATTGTTTCTCCAGTCGTCCATCGAGATGGTAGGATTCCTCGTCGATATGGTTTCAGACTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAGTTGAAGAAGGCAAATAC</pcr_primer_p1>
		<pcr_primer_p2>GGAGGATGGAGAGTTTTATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGAGTTGAAGAAGGCAAATACGAAAAGAAGGGATGCTGTGGAGACAACGATTGAGTATGCGAAGCTGTTGAGAGAGATGTGGGCGGCGAAGAAGAAGAACATCGCTCCGAACGATTTCAATGACGCCATCCGAATGAACTCGGACATGTTCGAGTGTAGTGAGCAGCATGACTGTCAGGAGTTCGTCGCATTCCTTCTCGATCAGCTTCATACTTCAATGTATGAAGCCAATAAAACTCTCCATCCTCC</canonical_amplicon>
		<polymorphic_amplicon>ATGAGTTGAAGAAGGCAAATACGAAAAGAAGGGATGCTGTGGAGACAACGATTGAGTATGCGAAGCTGTTGAGAGAGATGTGGGCGGCGAAGAARAAGAACATCGCTCCGAACGATTTCAATGACGCCATCCGAATGAACTCGGACATGTTCGAGTGTAGTGAGCAGCATGACTGTCAGGAGTTCGTCGCATTCCTTCTCGATCAGCTTCATACTTCAATGTATGAAGCCAATAAAACTCTCCATCCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27035</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>95628</contig_pos>
        <strand>+</strand>
        <context>CAAAATTCTA[C/T]GATGATTCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAAGCATGCTGGCCATTTATTCCTTCTCCCTTTCCTTGACAAAATTCTA</left_flank>
        <right_flank>GATGATTCTATTTTTTTGGTTTCCTAATATGTTCATTTTTCTCTCTTATC</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCATCCATTTGAAACGATTCGAGTTTCTCCGCGAGCAAGGTAGGATGGGCAAGTGTAAGAGAACAGTCAACTTCCCACTAAAACATTTCGATCCAGCTCCATTTGTTGATAAACCGGATGGCAATACTTATGAATGTATTGCACTTGCTGTGCGTTTCTAGTTGAGATTTTTAATTTTTTAATTTGAATTTCAGAATCACTATGGTCAATTGTCATGTGGTCACTTCATCGCATATGCGAAAAGTAACGAAGACAAATGGTTACTTCTGAACGATTGTTCCGTTAGAGTAAGTTCATTTTCCAAATGTTTTAATATTATCTTTTTTTCAGGAAGTATCCGAAGAAGAAGTCGACAAGCAAGGTGCATATCTTCTGTTCTACGAAAGAAAAGATGTCAAATAACAATAATCTTAAATATTTATATACTTTGAAACAAATAATATTAGCTCAAGCATGCTGGCCATTTATTCCTTCTCCCTTTCCTTGACAAAATTCTACGATGATTCTATTTTTTTGGTTTCCTAATATGTTCATTTTTCTCTCTTATCCTTGTGTACATATTTTCTTCACTTGCTAGTCAACCTCAAATTCTTTCCCACCTATTTCACTTTTTTACGTACTGGATGAATTTTAATGCATTTTTCCCCTCACGTGAATGACGTGTAAGAACAGCGTGTGATCTTGGAGGCTTGGATGGTTGTTTAGGTCCCTTGTAACCCTCCAATATGAGCCATGATGTTCTGACGCCTGACGACGCGCTTAGCGAACCACAAGAGGTAATTAAGCGCCGCGCCAGCAATCAACGCCCCTGCCTGTTTCCAGCAAAACACGCAACCTTTGAGCGAAGATTATAAATCGGATCGTACACAAGTGGAAACTGAAAAATCTCCACCCAAATCAACGGATAAAGAGAGAATCGAACTGCCGAAAGAGCCACTTCTGAAGCCGTACGTTCAGAAGGAAAATGTACACGCGCAGATTGTAGAAGATGATTTGGA</canonical>
            <polymorphic>GATCATCCATTTGAAACGATTCGAGTTTCTCCGCGAGCAAGGTAGGATGGGCAAGTGTAAGAGAACAGTCAACTTCCCACTAAAACATTTCGATCCAGCTCCATTTGTTGATAAACCGGATGGCAATACTTATGAATGTATTGCACTTGCTGTGCGTTTCTAGTTGAGATTTTTAATTTTTTAATTTGAATTTCAGAATCACTATGGTCAATTGTCATGTGGTCACTTCATCGCATATGCGAAAAGTAACGAAGACAAATGGTTACTTCTGAACGATTGTTCCGTTAGAGTAAGTTCATTTTCCAAATGTTTTAATATTATCTTTTTTTCAGGAAGTATCCGAAGAAGAAGTCGACAAGCAAGGTGCATATCTTCTGTTCTACGAAAGAAAAGATGTCAAATAACAATAATCTTAAATATTTATATACTTTGAAACAAATAATATTAGCTCAAGCATGCTGGCCATTTATTCCTTCTCCCTTTCCTTGACAAAATTCTAYGATGATTCTATTTTTTTGGTTTCCTAATATGTTCATTTTTCTCTCTTATCCTTGTGTACATATTTTCTTCACTTGCTAGTCAACCTCAAATTCTTTCCCACCTATTTCACTTTTTTACGTACTGGATGAATTTTAATGCATTTTTCCCCTCACGTGAATGACGTGTAAGAACAGCGTGTGATCTTGGAGGCTTGGATGGTTGTTTAGGTCCCTTGTAACCCTCCAATATGAGCCATGATGTTCTGACGCCTGACGACGCGCTTAGCGAACCACAAGAGGTAATTAAGCGCCGCGCCAGCAATCAACGCCCCTGCCTGTTTCCAGCAAAACACGCAACCTTTGAGCGAAGATTATAAATCGGATCGTACACAAGTGGAAACTGAAAAATCTCCACCCAAATCAACGGATAAAGAGAGAATCGAACTGCCGAAAGAGCCACTTCTGAAGCCGTACGTTCAGAAGGAAAATGTACACGCGCAGATTGTAGAAGATGATTTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAAAGAAAAGATGTCAAATAAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCATCCAGTACGTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGAAAGAAAAGATGTCAAATAACAATAATCTTAAATATTTATATACTTTGAAACAAATAATATTAGCTCAAGCATGCTGGCCATTTATTCCTTCTCCCTTTCCTTGACAAAATTCTACGATGATTCTATTTTTTTGGTTTCCTAATATGTTCATTTTTCTCTCTTATCCTTGTGTACATATTTTCTTCACTTGCTAGTCAACCTCAAATTCTTTCCCACCTATTTCACTTTTTTACGTACTGGATGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>CGAAAGAAAAGATGTCAAATAACAATAATCTTAAATATTTATATACTTTGAAACAAATAATATTAGCTCAAGCATGCTGGCCATTTATTCCTTCTCCCTTTCCTTGACAAAATTCTAYGATGATTCTATTTTTTTGGTTTCCTAATATGTTCATTTTTCTCTCTTATCCTTGTGTACATATTTTCTTCACTTGCTAGTCAACCTCAAATTCTTTCCCACCTATTTCACTTTTTTACGTACTGGATGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27036</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>95664</contig_pos>
        <strand>+</strand>
        <context>AATATGTTCA[C/T]TYTTCTCTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGACAAAATTCTACGATGATTCTATTTTTTTGGTTTCCTAATATGTTCA</left_flank>
        <right_flank>TTTTCTCTCTTATCCTTGTGTACATATTTTCTTCACTTGCTAGTCAACCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAAGGTAGGATGGGCAAGTGTAAGAGAACAGTCAACTTCCCACTAAAACATTTCGATCCAGCTCCATTTGTTGATAAACCGGATGGCAATACTTATGAATGTATTGCACTTGCTGTGCGTTTCTAGTTGAGATTTTTAATTTTTTAATTTGAATTTCAGAATCACTATGGTCAATTGTCATGTGGTCACTTCATCGCATATGCGAAAAGTAACGAAGACAAATGGTTACTTCTGAACGATTGTTCCGTTAGAGTAAGTTCATTTTCCAAATGTTTTAATATTATCTTTTTTTCAGGAAGTATCCGAAGAAGAAGTCGACAAGCAAGGTGCATATCTTCTGTTCTACGAAAGAAAAGATGTCAAATAACAATAATCTTAAATATTTATATACTTTGAAACAAATAATATTAGCTCAAGCATGCTGGCCATTTATTCCTTCTCCCTTTCCTTGACAAAATTCTACGATGATTCTATTTTTTTGGTTTCCTAATATGTTCATTTTTCTCTCTTATCCTTGTGTACATATTTTCTTCACTTGCTAGTCAACCTCAAATTCTTTCCCACCTATTTCACTTTTTTACGTACTGGATGAATTTTAATGCATTTTTCCCCTCACGTGAATGACGTGTAAGAACAGCGTGTGATCTTGGAGGCTTGGATGGTTGTTTAGGTCCCTTGTAACCCTCCAATATGAGCCATGATGTTCTGACGCCTGACGACGCGCTTAGCGAACCACAAGAGGTAATTAAGCGCCGCGCCAGCAATCAACGCCCCTGCCTGTTTCCAGCAAAACACGCAACCTTTGAGCGAAGATTATAAATCGGATCGTACACAAGTGGAAACTGAAAAATCTCCACCCAAATCAACGGATAAAGAGAGAATCGAACTGCCGAAAGAGCCACTTCTGAAGCCGTACGTTCAGAAGGAAAATGTACACGCGCAGATTGTAGAAGATGATTTGGAAGAGGCTCAGAACAGATTCCGAGTTGATTCCACACA</canonical>
            <polymorphic>GCAAGGTAGGATGGGCAAGTGTAAGAGAACAGTCAACTTCCCACTAAAACATTTCGATCCAGCTCCATTTGTTGATAAACCGGATGGCAATACTTATGAATGTATTGCACTTGCTGTGCGTTTCTAGTTGAGATTTTTAATTTTTTAATTTGAATTTCAGAATCACTATGGTCAATTGTCATGTGGTCACTTCATCGCATATGCGAAAAGTAACGAAGACAAATGGTTACTTCTGAACGATTGTTCCGTTAGAGTAAGTTCATTTTCCAAATGTTTTAATATTATCTTTTTTTCAGGAAGTATCCGAAGAAGAAGTCGACAAGCAAGGTGCATATCTTCTGTTCTACGAAAGAAAAGATGTCAAATAACAATAATCTTAAATATTTATATACTTTGAAACAAATAATATTAGCTCAAGCATGCTGGCCATTTATTCCTTCTCCCTTTCCTTGACAAAATTCTACGATGATTCTATTTTTTTGGTTTCCTAATATGTTCAYTTTTCTCTCTTATCCTTGTGTACATATTTTCTTCACTTGCTAGTCAACCTCAAATTCTTTCCCACCTATTTCACTTTTTTACGTACTGGATGAATTTTAATGCATTTTTCCCCTCACGTGAATGACGTGTAAGAACAGCGTGTGATCTTGGAGGCTTGGATGGTTGTTTAGGTCCCTTGTAACCCTCCAATATGAGCCATGATGTTCTGACGCCTGACGACGCGCTTAGCGAACCACAAGAGGTAATTAAGCGCCGCGCCAGCAATCAACGCCCCTGCCTGTTTCCAGCAAAACACGCAACCTTTGAGCGAAGATTATAAATCGGATCGTACACAAGTGGAAACTGAAAAATCTCCACCCAAATCAACGGATAAAGAGAGAATCGAACTGCCGAAAGAGCCACTTCTGAAGCCGTACGTTCAGAAGGAAAATGTACACGCGCAGATTGTAGAAGATGATTTGGAAGAGGCTCAGAACAGATTCCGAGTTGATTCCACACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAAAGAAAAGATGTCAAATAAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCATCCAGTACGTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGAAAGAAAAGATGTCAAATAACAATAATCTTAAATATTTATATACTTTGAAACAAATAATATTAGCTCAAGCATGCTGGCCATTTATTCCTTCTCCCTTTCCTTGACAAAATTCTACGATGATTCTATTTTTTTGGTTTCCTAATATGTTCATTTTTCTCTCTTATCCTTGTGTACATATTTTCTTCACTTGCTAGTCAACCTCAAATTCTTTCCCACCTATTTCACTTTTTTACGTACTGGATGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>CGAAAGAAAAGATGTCAAATAACAATAATCTTAAATATTTATATACTTTGAAACAAATAATATTAGCTCAAGCATGCTGGCCATTTATTCCTTCTCCCTTTCCTTGACAAAATTCTACGATGATTCTATTTTTTTGGTTTCCTAATATGTTCAYTTTTCTCTCTTATCCTTGTGTACATATTTTCTTCACTTGCTAGTCAACCTCAAATTCTTTCCCACCTATTTCACTTTTTTACGTACTGGATGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27037</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>95666</contig_pos>
        <strand>+</strand>
        <context>TATGTTCAYT[C/T]TTCTCTCTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACAAAATTCTACGATGATTCTATTTTTTTGGTTTCCTAATATGTTCATT</left_flank>
        <right_flank>TTCTCTCTTATCCTTGTGTACATATTTTCTTCACTTGCTAGTCAACCTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGTAGGATGGGCAAGTGTAAGAGAACAGTCAACTTCCCACTAAAACATTTCGATCCAGCTCCATTTGTTGATAAACCGGATGGCAATACTTATGAATGTATTGCACTTGCTGTGCGTTTCTAGTTGAGATTTTTAATTTTTTAATTTGAATTTCAGAATCACTATGGTCAATTGTCATGTGGTCACTTCATCGCATATGCGAAAAGTAACGAAGACAAATGGTTACTTCTGAACGATTGTTCCGTTAGAGTAAGTTCATTTTCCAAATGTTTTAATATTATCTTTTTTTCAGGAAGTATCCGAAGAAGAAGTCGACAAGCAAGGTGCATATCTTCTGTTCTACGAAAGAAAAGATGTCAAATAACAATAATCTTAAATATTTATATACTTTGAAACAAATAATATTAGCTCAAGCATGCTGGCCATTTATTCCTTCTCCCTTTCCTTGACAAAATTCTACGATGATTCTATTTTTTTGGTTTCCTAATATGTTCATTTTTCTCTCTTATCCTTGTGTACATATTTTCTTCACTTGCTAGTCAACCTCAAATTCTTTCCCACCTATTTCACTTTTTTACGTACTGGATGAATTTTAATGCATTTTTCCCCTCACGTGAATGACGTGTAAGAACAGCGTGTGATCTTGGAGGCTTGGATGGTTGTTTAGGTCCCTTGTAACCCTCCAATATGAGCCATGATGTTCTGACGCCTGACGACGCGCTTAGCGAACCACAAGAGGTAATTAAGCGCCGCGCCAGCAATCAACGCCCCTGCCTGTTTCCAGCAAAACACGCAACCTTTGAGCGAAGATTATAAATCGGATCGTACACAAGTGGAAACTGAAAAATCTCCACCCAAATCAACGGATAAAGAGAGAATCGAACTGCCGAAAGAGCCACTTCTGAAGCCGTACGTTCAGAAGGAAAATGTACACGCGCAGATTGTAGAAGATGATTTGGAAGAGGCTCAGAACAGATTCCGAGTTGATTCCACACAAA</canonical>
            <polymorphic>AAGGTAGGATGGGCAAGTGTAAGAGAACAGTCAACTTCCCACTAAAACATTTCGATCCAGCTCCATTTGTTGATAAACCGGATGGCAATACTTATGAATGTATTGCACTTGCTGTGCGTTTCTAGTTGAGATTTTTAATTTTTTAATTTGAATTTCAGAATCACTATGGTCAATTGTCATGTGGTCACTTCATCGCATATGCGAAAAGTAACGAAGACAAATGGTTACTTCTGAACGATTGTTCCGTTAGAGTAAGTTCATTTTCCAAATGTTTTAATATTATCTTTTTTTCAGGAAGTATCCGAAGAAGAAGTCGACAAGCAAGGTGCATATCTTCTGTTCTACGAAAGAAAAGATGTCAAATAACAATAATCTTAAATATTTATATACTTTGAAACAAATAATATTAGCTCAAGCATGCTGGCCATTTATTCCTTCTCCCTTTCCTTGACAAAATTCTACGATGATTCTATTTTTTTGGTTTCCTAATATGTTCATTYTTCTCTCTTATCCTTGTGTACATATTTTCTTCACTTGCTAGTCAACCTCAAATTCTTTCCCACCTATTTCACTTTTTTACGTACTGGATGAATTTTAATGCATTTTTCCCCTCACGTGAATGACGTGTAAGAACAGCGTGTGATCTTGGAGGCTTGGATGGTTGTTTAGGTCCCTTGTAACCCTCCAATATGAGCCATGATGTTCTGACGCCTGACGACGCGCTTAGCGAACCACAAGAGGTAATTAAGCGCCGCGCCAGCAATCAACGCCCCTGCCTGTTTCCAGCAAAACACGCAACCTTTGAGCGAAGATTATAAATCGGATCGTACACAAGTGGAAACTGAAAAATCTCCACCCAAATCAACGGATAAAGAGAGAATCGAACTGCCGAAAGAGCCACTTCTGAAGCCGTACGTTCAGAAGGAAAATGTACACGCGCAGATTGTAGAAGATGATTTGGAAGAGGCTCAGAACAGATTCCGAGTTGATTCCACACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAAAGAAAAGATGTCAAATAAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCATCCAGTACGTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGAAAGAAAAGATGTCAAATAACAATAATCTTAAATATTTATATACTTTGAAACAAATAATATTAGCTCAAGCATGCTGGCCATTTATTCCTTCTCCCTTTCCTTGACAAAATTCTACGATGATTCTATTTTTTTGGTTTCCTAATATGTTCATTTTTCTCTCTTATCCTTGTGTACATATTTTCTTCACTTGCTAGTCAACCTCAAATTCTTTCCCACCTATTTCACTTTTTTACGTACTGGATGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>CGAAAGAAAAGATGTCAAATAACAATAATCTTAAATATTTATATACTTTGAAACAAATAATATTAGCTCAAGCATGCTGGCCATTTATTCCTTCTCCCTTTCCTTGACAAAATTCTACGATGATTCTATTTTTTTGGTTTCCTAATATGTTCATTYTTCTCTCTTATCCTTGTGTACATATTTTCTTCACTTGCTAGTCAACCTCAAATTCTTTCCCACCTATTTCACTTTTTTACGTACTGGATGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27038</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>95869</contig_pos>
        <strand>+</strand>
        <context>AGCCATGATG[C/T]TCTGACGCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTGGATGGTTGTTTAGGTCCCTTGTAACCCTCCAATATGAGCCATGATG</left_flank>
        <right_flank>TCTGACGCCTGACGACGCGCTTAGCGAACCACAAGAGGTAATTAAGCGCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGTAACGAAGACAAATGGTTACTTCTGAACGATTGTTCCGTTAGAGTAAGTTCATTTTCCAAATGTTTTAATATTATCTTTTTTTCAGGAAGTATCCGAAGAAGAAGTCGACAAGCAAGGTGCATATCTTCTGTTCTACGAAAGAAAAGATGTCAAATAACAATAATCTTAAATATTTATATACTTTGAAACAAATAATATTAGCTCAAGCATGCTGGCCATTTATTCCTTCTCCCTTTCCTTGACAAAATTCTACGATGATTCTATTTTTTTGGTTTCCTAATATGTTCATTTTTCTCTCTTATCCTTGTGTACATATTTTCTTCACTTGCTAGTCAACCTCAAATTCTTTCCCACCTATTTCACTTTTTTACGTACTGGATGAATTTTAATGCATTTTTCCCCTCACGTGAATGACGTGTAAGAACAGCGTGTGATCTTGGAGGCTTGGATGGTTGTTTAGGTCCCTTGTAACCCTCCAATATGAGCCATGATGTTCTGACGCCTGACGACGCGCTTAGCGAACCACAAGAGGTAATTAAGCGCCGCGCCAGCAATCAACGCCCCTGCCTGTTTCCAGCAAAACACGCAACCTTTGAGCGAAGATTATAAATCGGATCGTACACAAGTGGAAACTGAAAAATCTCCACCCAAATCAACGGATAAAGAGAGAATCGAACTGCCGAAAGAGCCACTTCTGAAGCCGTACGTTCAGAAGGAAAATGTACACGCGCAGATTGTAGAAGATGATTTGGAAGAGGCTCAGAACAGATTCCGAGTTGATTCCACACAAACTTACACAGTTGCAGAGGACTTTAAGGCTTTAGAAGATATTGGGAAGGATAAGAAAAATAGGGAAAAGAGTTCTGAAGGGAAGAGAGAGAGAGATCGAGTGTTGAGATGGAAAGGGATTACGGTAGAGGAGATGAAGAAGAAGAGGGTGGAAAGAACGATTTTGGATGATAGTATGGATAAGAATGGAAATTTCTTAATGCAT</canonical>
            <polymorphic>AAAAGTAACGAAGACAAATGGTTACTTCTGAACGATTGTTCCGTTAGAGTAAGTTCATTTTCCAAATGTTTTAATATTATCTTTTTTTCAGGAAGTATCCGAAGAAGAAGTCGACAAGCAAGGTGCATATCTTCTGTTCTACGAAAGAAAAGATGTCAAATAACAATAATCTTAAATATTTATATACTTTGAAACAAATAATATTAGCTCAAGCATGCTGGCCATTTATTCCTTCTCCCTTTCCTTGACAAAATTCTACGATGATTCTATTTTTTTGGTTTCCTAATATGTTCATTTTTCTCTCTTATCCTTGTGTACATATTTTCTTCACTTGCTAGTCAACCTCAAATTCTTTCCCACCTATTTCACTTTTTTACGTACTGGATGAATTTTAATGCATTTTTCCCCTCACGTGAATGACGTGTAAGAACAGCGTGTGATCTTGGAGGCTTGGATGGTTGTTTAGGTCCCTTGTAACCCTCCAATATGAGCCATGATGYTCTGACGCCTGACGACGCGCTTAGCGAACCACAAGAGGTAATTAAGCGCCGCGCCAGCAATCAACGCCCCTGCCTGTTTCCAGCAAAACACGCAACCTTTGAGCGAAGATTATAAATCGGATCGTACACAAGTGGAAACTGAAAAATCTCCACCCAAATCAACGGATAAAGAGAGAATCGAACTGCCGAAAGAGCCACTTCTGAAGCCGTACGTTCAGAAGGAAAATGTACACGCGCAGATTGTAGAAGATGATTTGGAAGAGGCTCAGAACAGATTCCGAGTTGATTCCACACAAACTTACACAGTTGCAGAGGACTTTAAGGCTTTAGAAGATATTGGGAAGGATAAGAAAAATAGGGAAAAGAGTTCTGAAGGGAAGAGAGAGAGAGATCGAGTGTTGAGATGGAAAGGGATTACGGTAGAGGAGATGAAGAAGAAGAGGGTGGAAAGAACGATTTTGGATGATAGTATGGATAAGAATGGAAATTTCTTAATGCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATGAATTTTAATGCATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGTACGATCCGATTTATAATCTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGATGAATTTTAATGCATTTTTCCCCTCACGTGAATGACGTGTAAGAACAGCGTGTGATCTTGGAGGCTTGGATGGTTGTTTAGGTCCCTTGTAACCCTCCAATATGAGCCATGATGTTCTGACGCCTGACGACGCGCTTAGCGAACCACAAGAGGTAATTAAGCGCCGCGCCAGCAATCAACGCCCCTGCCTGTTTCCAGCAAAACACGCAACCTTTGAGCGAAGATTATAAATCGGATCGTACA</canonical_amplicon>
		<polymorphic_amplicon>GGATGAATTTTAATGCATTTTTCCCCTCACGTGAATGACGTGTAAGAACAGCGTGTGATCTTGGAGGCTTGGATGGTTGTTTAGGTCCCTTGTAACCCTCCAATATGAGCCATGATGYTCTGACGCCTGACGACGCGCTTAGCGAACCACAAGAGGTAATTAAGCGCCGCGCCAGCAATCAACGCCCCTGCCTGTTTCCAGCAAAACACGCAACCTTTGAGCGAAGATTATAAATCGGATCGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27039</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>97366</contig_pos>
        <strand></strand>
        <context>ctctgagact[T/C]tgagattctg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCTGAGATTATGAGGTTCTGAGATTCTGAGATTCTGAGACTCTGAGACT</left_flank>
        <right_flank>TGAGATTCTGAGATTCTGAGACTCTGAGACTCTGAGACTCTGAGATTCTG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATTTTGGTTAAAGTCCCCTTCAATCAAATTTAACCTAAATACTAGGTAAGATTTCCAGACGTAAGATGACGTCTTCTGGAATGAAACAACTCAGCGCTTATGTTCAACAAGAAGATGTTTTCATGGCGAGTCAAACAGTTTCAGAAGTTCTTCATTTTGCTGTCAAAATGAGAAGTCCGGAGAGGTTGAGCAAGAAGAAAAGAAAGAATTTAGTAGAGAGTATGTTGACGACTTTTGGATTGAAGAATTGTGAGAATACCCGAGTAGGATCAGTAAAAGAGAAGGGAATATCGAGAGGGGAGAAGAAAAGATTGACGATTGCTTGTGAGGTTAGAATTACTAGAAACCAGAGATTTCCGAATTTTGGATTCTCAGATTCCAGATTTCGTACTCCGGATTCCGAATTTCGGATTCTGGATTCCAAATTCCAGACTCCAGATTCCAGATTCTGAGATTATGAGGTTCTGAGATTCTGAGATTCTGAGACTCTGAGACTTTGAGATTCTGAGATTCTGAGACTCTGAGACTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTAAGATTCTGAGGTTTTGAGATTCTGAGATTCTGAGATTTTGAGGTTCTGAGATTCTGAGATTCTGAGACTCTGAGACTCTGAGATTCTGAGACTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGGTTTTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGATATTTTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTGGATTCCGGATTCCAGATTCCGGATTCCAGATTCCAGATTCCAGATTCCGAAACACTGCCTACTTTTCAGATCCTCACAGATCCTCCAGTCTTATTCTGCGATGAGCCAACATCAGGACTAGA</canonical>
            <polymorphic>GAAATTTTGGTTAAAGTCCCCTTCAATCAAATTTAACCTAAATACTAGGTAAGATTTCCAGACGTAAGATGACGTCTTCTGGAATGAAACAACTCAGCGCTTATGTTCAACAAGAAGATGTTTTCATGGCGAGTCAAACAGTTTCAGAAGTTCTTCATTTTGCTGTCAAAATGAGAAGTCCGGAGAGGTTGAGCAAGAAGAAAAGAAAGAATTTAGTAGAGAGTATGTTGACGACTTTTGGATTGAAGAATTGTGAGAATACCCGAGTAGGATCAGTAAAAGAGAAGGGAATATCGAGAGGGGAGAAGAAAAGATTGACGATTGCTTGTGAGGTTAGAATTACTAGAAACCAGAGATTTCCGAATTTTGGATTCTCAGATTCCAGATTTCGTACTCCGGATTCCGAATTTCGGATTCTGGATTCCAAATTCCAGACTCCAGATTCCAGATTCTGAGATTATGAGGTTCTGAGATTCTGAGATTCTGAGACTCTGAGACTYTGAGATTCTGAGATTCTGAGACTCTGAGACTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTAAGATTCTGAGGTTTTGAGATTCTGAGATTCTGAGATTTTGAGGTTCTGAGATTCTGAGATTCTGAGACTCTGAGACTCTGAGATTCTGAGACTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGGTTTTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGATATTTTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTGGATTCCGGATTCCAGATTCCGGATTCCAGATTCCAGATTCCAGATTCCGAAACACTGCCTACTTTTCAGATCCTCACAGATCCTCCAGTCTTATTCTGCGATGAGCCAACATCAGGACTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTGCTTGTGAGGTTAGAATTA</pcr_primer_p1>
		<pcr_primer_p2>ATCTGAAAAGTAGGCAGTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>630</pcr_amplicon_size>
		<canonical_amplicon>GATTGCTTGTGAGGTTAGAATTACTAGAAACCAGAGATTTCCGAATTTTGGATTCTCAGATTCCAGATTTCGTACTCCGGATTCCGAATTTCGGATTCTGGATTCCAAATTCCAGACTCCAGATTCCAGATTCTGAGATTATGAGGTTCTGAGATTCTGAGATTCTGAGACTCTGAGACTTTGAGATTCTGAGATTCTGAGACTCTGAGACTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTAAGATTCTGAGGTTTTGAGATTCTGAGATTCTGAGATTTTGAGGTTCTGAGATTCTGAGATTCTGAGACTCTGAGACTCTGAGATTCTGAGACTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGGTTTTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGATATTTTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTGGATTCCGGATTCCAGATTCCGGATTCCAGATTCCAGATTCCAGATTCCGAAACACTGCCTACTTTTCAGAT</canonical_amplicon>
		<polymorphic_amplicon>GATTGCTTGTGAGGTTAGAATTACTAGAAACCAGAGATTTCCGAATTTTGGATTCTCAGATTCCAGATTTCGTACTCCGGATTCCGAATTTCGGATTCTGGATTCCAAATTCCAGACTCCAGATTCCAGATTCTGAGATTATGAGGTTCTGAGATTCTGAGATTCTGAGACTCTGAGACTYTGAGATTCTGAGATTCTGAGACTCTGAGACTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTAAGATTCTGAGGTTTTGAGATTCTGAGATTCTGAGATTTTGAGGTTCTGAGATTCTGAGATTCTGAGACTCTGAGACTCTGAGATTCTGAGACTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGGTTTTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGATATTTTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTGGATTCCGGATTCCAGATTCCGGATTCCAGATTCCAGATTCCAGATTCCGAAACACTGCCTACTTTTCAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27040</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>97388</contig_pos>
        <strand></strand>
        <context>gattctgaga[C/T]tctgagactc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTCTGAGATTCTGAGACTCTGAGACTTTGAGATTCTGAGATTCTGAGA</left_flank>
        <right_flank>TCTGAGACTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGACTC</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAATCAAATTTAACCTAAATACTAGGTAAGATTTCCAGACGTAAGATGACGTCTTCTGGAATGAAACAACTCAGCGCTTATGTTCAACAAGAAGATGTTTTCATGGCGAGTCAAACAGTTTCAGAAGTTCTTCATTTTGCTGTCAAAATGAGAAGTCCGGAGAGGTTGAGCAAGAAGAAAAGAAAGAATTTAGTAGAGAGTATGTTGACGACTTTTGGATTGAAGAATTGTGAGAATACCCGAGTAGGATCAGTAAAAGAGAAGGGAATATCGAGAGGGGAGAAGAAAAGATTGACGATTGCTTGTGAGGTTAGAATTACTAGAAACCAGAGATTTCCGAATTTTGGATTCTCAGATTCCAGATTTCGTACTCCGGATTCCGAATTTCGGATTCTGGATTCCAAATTCCAGACTCCAGATTCCAGATTCTGAGATTATGAGGTTCTGAGATTCTGAGATTCTGAGACTCTGAGACTTTGAGATTCTGAGATTCTGAGACTCTGAGACTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTAAGATTCTGAGGTTTTGAGATTCTGAGATTCTGAGATTTTGAGGTTCTGAGATTCTGAGATTCTGAGACTCTGAGACTCTGAGATTCTGAGACTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGGTTTTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGATATTTTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTGGATTCCGGATTCCAGATTCCGGATTCCAGATTCCAGATTCCAGATTCCGAAACACTGCCTACTTTTCAGATCCTCACAGATCCTCCAGTCTTATTCTGCGATGAGCCAACATCAGGACTAGATTCTTTTATGTCTCATCAAGTG</canonical>
            <polymorphic>TCAATCAAATTTAACCTAAATACTAGGTAAGATTTCCAGACGTAAGATGACGTCTTCTGGAATGAAACAACTCAGCGCTTATGTTCAACAAGAAGATGTTTTCATGGCGAGTCAAACAGTTTCAGAAGTTCTTCATTTTGCTGTCAAAATGAGAAGTCCGGAGAGGTTGAGCAAGAAGAAAAGAAAGAATTTAGTAGAGAGTATGTTGACGACTTTTGGATTGAAGAATTGTGAGAATACCCGAGTAGGATCAGTAAAAGAGAAGGGAATATCGAGAGGGGAGAAGAAAAGATTGACGATTGCTTGTGAGGTTAGAATTACTAGAAACCAGAGATTTCCGAATTTTGGATTCTCAGATTCCAGATTTCGTACTCCGGATTCCGAATTTCGGATTCTGGATTCCAAATTCCAGACTCCAGATTCCAGATTCTGAGATTATGAGGTTCTGAGATTCTGAGATTCTGAGACTCTGAGACTTTGAGATTCTGAGATTCTGAGAYTCTGAGACTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTAAGATTCTGAGGTTTTGAGATTCTGAGATTCTGAGATTTTGAGGTTCTGAGATTCTGAGATTCTGAGACTCTGAGACTCTGAGATTCTGAGACTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGGTTTTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGATATTTTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTGGATTCCGGATTCCAGATTCCGGATTCCAGATTCCAGATTCCAGATTCCGAAACACTGCCTACTTTTCAGATCCTCACAGATCCTCCAGTCTTATTCTGCGATGAGCCAACATCAGGACTAGATTCTTTTATGTCTCATCAAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTGCTTGTGAGGTTAGAATTA</pcr_primer_p1>
		<pcr_primer_p2>ATCTGAAAAGTAGGCAGTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>630</pcr_amplicon_size>
		<canonical_amplicon>GATTGCTTGTGAGGTTAGAATTACTAGAAACCAGAGATTTCCGAATTTTGGATTCTCAGATTCCAGATTTCGTACTCCGGATTCCGAATTTCGGATTCTGGATTCCAAATTCCAGACTCCAGATTCCAGATTCTGAGATTATGAGGTTCTGAGATTCTGAGATTCTGAGACTCTGAGACTTTGAGATTCTGAGATTCTGAGACTCTGAGACTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTAAGATTCTGAGGTTTTGAGATTCTGAGATTCTGAGATTTTGAGGTTCTGAGATTCTGAGATTCTGAGACTCTGAGACTCTGAGATTCTGAGACTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGGTTTTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGATATTTTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTGGATTCCGGATTCCAGATTCCGGATTCCAGATTCCAGATTCCAGATTCCGAAACACTGCCTACTTTTCAGAT</canonical_amplicon>
		<polymorphic_amplicon>GATTGCTTGTGAGGTTAGAATTACTAGAAACCAGAGATTTCCGAATTTTGGATTCTCAGATTCCAGATTTCGTACTCCGGATTCCGAATTTCGGATTCTGGATTCCAAATTCCAGACTCCAGATTCCAGATTCTGAGATTATGAGGTTCTGAGATTCTGAGATTCTGAGACTCTGAGACTTTGAGATTCTGAGATTCTGAGAYTCTGAGACTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTAAGATTCTGAGGTTTTGAGATTCTGAGATTCTGAGATTTTGAGGTTCTGAGATTCTGAGATTCTGAGACTCTGAGACTCTGAGATTCTGAGACTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGGTTTTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGATATTTTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTGGATTCCGGATTCCAGATTCCGGATTCCAGATTCCAGATTCCAGATTCCGAAACACTGCCTACTTTTCAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27041</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>97404</contig_pos>
        <strand></strand>
        <context>gactctgaga[C/T]tctgagattc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACTCTGAGACTTTGAGATTCTGAGATTCTGAGACTCTGAGACTCTGAGA</left_flank>
        <right_flank>TCTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAGATTCTGAGATTC</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATACTAGGTAAGATTTCCAGACGTAAGATGACGTCTTCTGGAATGAAACAACTCAGCGCTTATGTTCAACAAGAAGATGTTTTCATGGCGAGTCAAACAGTTTCAGAAGTTCTTCATTTTGCTGTCAAAATGAGAAGTCCGGAGAGGTTGAGCAAGAAGAAAAGAAAGAATTTAGTAGAGAGTATGTTGACGACTTTTGGATTGAAGAATTGTGAGAATACCCGAGTAGGATCAGTAAAAGAGAAGGGAATATCGAGAGGGGAGAAGAAAAGATTGACGATTGCTTGTGAGGTTAGAATTACTAGAAACCAGAGATTTCCGAATTTTGGATTCTCAGATTCCAGATTTCGTACTCCGGATTCCGAATTTCGGATTCTGGATTCCAAATTCCAGACTCCAGATTCCAGATTCTGAGATTATGAGGTTCTGAGATTCTGAGATTCTGAGACTCTGAGACTTTGAGATTCTGAGATTCTGAGACTCTGAGACTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTAAGATTCTGAGGTTTTGAGATTCTGAGATTCTGAGATTTTGAGGTTCTGAGATTCTGAGATTCTGAGACTCTGAGACTCTGAGATTCTGAGACTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGGTTTTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGATATTTTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTGGATTCCGGATTCCAGATTCCGGATTCCAGATTCCAGATTCCAGATTCCGAAACACTGCCTACTTTTCAGATCCTCACAGATCCTCCAGTCTTATTCTGCGATGAGCCAACATCAGGACTAGATTCTTTTATGTCTCATCAAGTGATGAAATGTCTCAAGG</canonical>
            <polymorphic>TAAATACTAGGTAAGATTTCCAGACGTAAGATGACGTCTTCTGGAATGAAACAACTCAGCGCTTATGTTCAACAAGAAGATGTTTTCATGGCGAGTCAAACAGTTTCAGAAGTTCTTCATTTTGCTGTCAAAATGAGAAGTCCGGAGAGGTTGAGCAAGAAGAAAAGAAAGAATTTAGTAGAGAGTATGTTGACGACTTTTGGATTGAAGAATTGTGAGAATACCCGAGTAGGATCAGTAAAAGAGAAGGGAATATCGAGAGGGGAGAAGAAAAGATTGACGATTGCTTGTGAGGTTAGAATTACTAGAAACCAGAGATTTCCGAATTTTGGATTCTCAGATTCCAGATTTCGTACTCCGGATTCCGAATTTCGGATTCTGGATTCCAAATTCCAGACTCCAGATTCCAGATTCTGAGATTATGAGGTTCTGAGATTCTGAGATTCTGAGACTCTGAGACTTTGAGATTCTGAGATTCTGAGACTCTGAGACTCTGAGAYTCTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTAAGATTCTGAGGTTTTGAGATTCTGAGATTCTGAGATTTTGAGGTTCTGAGATTCTGAGATTCTGAGACTCTGAGACTCTGAGATTCTGAGACTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGGTTTTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGATATTTTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTGGATTCCGGATTCCAGATTCCGGATTCCAGATTCCAGATTCCAGATTCCGAAACACTGCCTACTTTTCAGATCCTCACAGATCCTCCAGTCTTATTCTGCGATGAGCCAACATCAGGACTAGATTCTTTTATGTCTCATCAAGTGATGAAATGTCTCAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTGCTTGTGAGGTTAGAATTA</pcr_primer_p1>
		<pcr_primer_p2>ATCTGAAAAGTAGGCAGTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>630</pcr_amplicon_size>
		<canonical_amplicon>GATTGCTTGTGAGGTTAGAATTACTAGAAACCAGAGATTTCCGAATTTTGGATTCTCAGATTCCAGATTTCGTACTCCGGATTCCGAATTTCGGATTCTGGATTCCAAATTCCAGACTCCAGATTCCAGATTCTGAGATTATGAGGTTCTGAGATTCTGAGATTCTGAGACTCTGAGACTTTGAGATTCTGAGATTCTGAGACTCTGAGACTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTAAGATTCTGAGGTTTTGAGATTCTGAGATTCTGAGATTTTGAGGTTCTGAGATTCTGAGATTCTGAGACTCTGAGACTCTGAGATTCTGAGACTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGGTTTTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGATATTTTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTGGATTCCGGATTCCAGATTCCGGATTCCAGATTCCAGATTCCAGATTCCGAAACACTGCCTACTTTTCAGAT</canonical_amplicon>
		<polymorphic_amplicon>GATTGCTTGTGAGGTTAGAATTACTAGAAACCAGAGATTTCCGAATTTTGGATTCTCAGATTCCAGATTTCGTACTCCGGATTCCGAATTTCGGATTCTGGATTCCAAATTCCAGACTCCAGATTCCAGATTCTGAGATTATGAGGTTCTGAGATTCTGAGATTCTGAGACTCTGAGACTTTGAGATTCTGAGATTCTGAGACTCTGAGACTCTGAGAYTCTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTAAGATTCTGAGGTTTTGAGATTCTGAGATTCTGAGATTTTGAGGTTCTGAGATTCTGAGATTCTGAGACTCTGAGACTCTGAGATTCTGAGACTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGACTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGGTTTTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGATATTTTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTGGATTCCGGATTCCAGATTCCGGATTCCAGATTCCAGATTCCAGATTCCGAAACACTGCCTACTTTTCAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27042</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>100779</contig_pos>
        <strand>+</strand>
        <context>TATAAAGTTA[A/C]AAACAAACAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCATTTTATATTCAATTTTCAAGCTTTTCAAGAATTTGTTTATAAAGTTA</left_flank>
        <right_flank>AAACAAACAGATAACATTTATTATAACAGTTTCTAAAAGATCAGAACATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTTAAAAAACATGACATAGATGTGCTTAAAGTGAACGGTTTAGGTGACCTTCTATTAGAGTACTTAGGACAGGTGTTGATTAAAATGGAAACGGTCAAAAGGGAATTTAATTTCACACTCAATTTCGGGTCAGCATCCTTCCCTTTATCCCTAAATAAACAACCACCTCCCACTGATTTCCTAACCCCGTAAACGGATATAAAATAGAGATTATCCTCGAAATCAGTAGGTCAGTGGACACGTGGATATCGAGTTACACAATTTGTATGGAGAGTAGGAGAGAGGAGGTAATGAGACACTGTAGTTGGATAACTATTACGTAAGTATGAGCGATAACGTGCTGGTAGGGCAAACAAACTTCATGAGGTGCAGAAAATAAGAAGAACTCCATGGCCTAGGAAAATGAAAAAAAGAAAAACTAGTCCACATTGTTAATACAAAATCACTTCATTTTATATTCAATTTTCAAGCTTTTCAAGAATTTGTTTATAAAGTTAAAAACAAACAGATAACATTTATTATAACAGTTTCTAAAAGATCAGAACATTGAAAATAGAGACTTCAGGAAGCGATTTTTGAAGTCGGAAGCGGACATTCTCGGAAGTCGGATATCGGAAAGCTAAGCGTACACTATTAATTGCTTTTCATTTTCTTAAAAAAATTGATTTCGGTCATTTGGTAAAAGGGGGACGTTCAGTGATAAACACCTAGCCATGAACCCCAAACAATGGCGACCCGAGGCCTTTTAGTACTTTTTTTACTTCCATGACGTCAGTCTTCTAAAAAAATGAATAGCAACGAGTAGCGCATGCGTAGCTTCCGAGCATCCGTCCTCCAACCATCATCCTGTGTTGCTGACTCATTCCGTGATCCAACCAGATTGACTGCTCTCCTGCTTGCTTTTTATCGTTGATCATCTCCCATCAATTGAACCATAAAAGCTTCCCTGGAATCACGTTTCAACTCGGACTCCTCATCGACTCCTCTGTCCGACTTCT</canonical>
            <polymorphic>CTGTTAAAAAACATGACATAGATGTGCTTAAAGTGAACGGTTTAGGTGACCTTCTATTAGAGTACTTAGGACAGGTGTTGATTAAAATGGAAACGGTCAAAAGGGAATTTAATTTCACACTCAATTTCGGGTCAGCATCCTTCCCTTTATCCCTAAATAAACAACCACCTCCCACTGATTTCCTAACCCCGTAAACGGATATAAAATAGAGATTATCCTCGAAATCAGTAGGTCAGTGGACACGTGGATATCGAGTTACACAATTTGTATGGAGAGTAGGAGAGAGGAGGTAATGAGACACTGTAGTTGGATAACTATTACGTAAGTATGAGCGATAACGTGCTGGTAGGGCAAACAAACTTCATGAGGTGCAGAAAATAAGAAGAACTCCATGGCCTAGGAAAATGAAAAAAAGAAAAACTAGTCCACATTGTTAATACAAAATCACTTCATTTTATATTCAATTTTCAAGCTTTTCAAGAATTTGTTTATAAAGTTAMAAACAAACAGATAACATTTATTATAACAGTTTCTAAAAGATCAGAACATTGAAAATAGAGACTTCAGGAAGCGATTTTTGAAGTCGGAAGCGGACATTCTCGGAAGTCGGATATCGGAAAGCTAAGCGTACACTATTAATTGCTTTTCATTTTCTTAAAAAAATTGATTTCGGTCATTTGGTAAAAGGGGGACGTTCAGTGATAAACACCTAGCCATGAACCCCAAACAATGGCGACCCGAGGCCTTTTAGTACTTTTTTTACTTCCATGACGTCAGTCTTCTAAAAAAATGAATAGCAACGAGTAGCGCATGCGTAGCTTCCGAGCATCCGTCCTCCAACCATCATCCTGTGTTGCTGACTCATTCCGTGATCCAACCAGATTGACTGCTCTCCTGCTTGCTTTTTATCGTTGATCATCTCCCATCAATTGAACCATAAAAGCTTCCCTGGAATCACGTTTCAACTCGGACTCCTCATCGACTCCTCTGTCCGACTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>345 325 139 63 54 27 24 19 4</canonical_bands>
                <polymorphic_bands>345 325 202 54 27 24 19 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGTGCAGAAAATAAGAAGAACT</pcr_primer_p1>
		<pcr_primer_p2>GATATCCGACTTCCGAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGGTGCAGAAAATAAGAAGAACTCCATGGCCTAGGAAAATGAAAAAAAGAAAAACTAGTCCACATTGTTAATACAAAATCACTTCATTTTATATTCAATTTTCAAGCTTTTCAAGAATTTGTTTATAAAGTTAAAAACAAACAGATAACATTTATTATAACAGTTTCTAAAAGATCAGAACATTGAAAATAGAGACTTCAGGAAGCGATTTTTGAAGTCGGAAGCGGACATTCTCGGAAGTCGGATATC</canonical_amplicon>
		<polymorphic_amplicon>AGGTGCAGAAAATAAGAAGAACTCCATGGCCTAGGAAAATGAAAAAAAGAAAAACTAGTCCACATTGTTAATACAAAATCACTTCATTTTATATTCAATTTTCAAGCTTTTCAAGAATTTGTTTATAAAGTTAMAAACAAACAGATAACATTTATTATAACAGTTTCTAAAAGATCAGAACATTGAAAATAGAGACTTCAGGAAGCGATTTTTGAAGTCGGAAGCGGACATTCTCGGAAGTCGGATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27043</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>100936</contig_pos>
        <strand></strand>
        <context>tcattttctt[A/T]wwaaaattga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGGATATCGGAAAGCTAAGCGTACACTATTAATTGCTTTTCATTTTCTT</left_flank>
        <right_flank>AAAAAATTGATTTCGGTCATTTGGTAAAAGGGGGACGTTCAGTGATAAAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAACAACCACCTCCCACTGATTTCCTAACCCCGTAAACGGATATAAAATAGAGATTATCCTCGAAATCAGTAGGTCAGTGGACACGTGGATATCGAGTTACACAATTTGTATGGAGAGTAGGAGAGAGGAGGTAATGAGACACTGTAGTTGGATAACTATTACGTAAGTATGAGCGATAACGTGCTGGTAGGGCAAACAAACTTCATGAGGTGCAGAAAATAAGAAGAACTCCATGGCCTAGGAAAATGAAAAAAAGAAAAACTAGTCCACATTGTTAATACAAAATCACTTCATTTTATATTCAATTTTCAAGCTTTTCAAGAATTTGTTTATAAAGTTAAAAACAAACAGATAACATTTATTATAACAGTTTCTAAAAGATCAGAACATTGAAAATAGAGACTTCAGGAAGCGATTTTTGAAGTCGGAAGCGGACATTCTCGGAAGTCGGATATCGGAAAGCTAAGCGTACACTATTAATTGCTTTTCATTTTCTTAAAAAAATTGATTTCGGTCATTTGGTAAAAGGGGGACGTTCAGTGATAAACACCTAGCCATGAACCCCAAACAATGGCGACCCGAGGCCTTTTAGTACTTTTTTTACTTCCATGACGTCAGTCTTCTAAAAAAATGAATAGCAACGAGTAGCGCATGCGTAGCTTCCGAGCATCCGTCCTCCAACCATCATCCTGTGTTGCTGACTCATTCCGTGATCCAACCAGATTGACTGCTCTCCTGCTTGCTTTTTATCGTTGATCATCTCCCATCAATTGAACCATAAAAGCTTCCCTGGAATCACGTTTCAACTCGGACTCCTCATCGACTCCTCTGTCCGACTTCTTGTTGAATTCTCCAGCTTATATAGCCCCTGTAAATCAGATCTGAAGATAAAATAAGAAAAGATTTCATGAAAGTAGCACGCGGAAATGTTGTAACTTTTTTTTAGATTACTGTAGTTTTCGACTATAATCAGTTGCAATCACCACGCTGAAAATTTT</canonical>
            <polymorphic>TAAACAACCACCTCCCACTGATTTCCTAACCCCGTAAACGGATATAAAATAGAGATTATCCTCGAAATCAGTAGGTCAGTGGACACGTGGATATCGAGTTACACAATTTGTATGGAGAGTAGGAGAGAGGAGGTAATGAGACACTGTAGTTGGATAACTATTACGTAAGTATGAGCGATAACGTGCTGGTAGGGCAAACAAACTTCATGAGGTGCAGAAAATAAGAAGAACTCCATGGCCTAGGAAAATGAAAAAAAGAAAAACTAGTCCACATTGTTAATACAAAATCACTTCATTTTATATTCAATTTTCAAGCTTTTCAAGAATTTGTTTATAAAGTTAAAAACAAACAGATAACATTTATTATAACAGTTTCTAAAAGATCAGAACATTGAAAATAGAGACTTCAGGAAGCGATTTTTGAAGTCGGAAGCGGACATTCTCGGAAGTCGGATATCGGAAAGCTAAGCGTACACTATTAATTGCTTTTCATTTTCTTWAAAAAATTGATTTCGGTCATTTGGTAAAAGGGGGACGTTCAGTGATAAACACCTAGCCATGAACCCCAAACAATGGCGACCCGAGGCCTTTTAGTACTTTTTTTACTTCCATGACGTCAGTCTTCTAAAAAAATGAATAGCAACGAGTAGCGCATGCGTAGCTTCCGAGCATCCGTCCTCCAACCATCATCCTGTGTTGCTGACTCATTCCGTGATCCAACCAGATTGACTGCTCTCCTGCTTGCTTTTTATCGTTGATCATCTCCCATCAATTGAACCATAAAAGCTTCCCTGGAATCACGTTTCAACTCGGACTCCTCATCGACTCCTCTGTCCGACTTCTTGTTGAATTCTCCAGCTTATATAGCCCCTGTAAATCAGATCTGAAGATAAAATAAGAAAAGATTTCATGAAAGTAGCACGCGGAAATGTTGTAACTTTTTTTTAGATTACTGTAGTTTTCGACTATAATCAGTTGCAATCACCACGCTGAAAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 277 139 63 19</canonical_bands>
                <polymorphic_bands>521 277 139 63</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACTTCAGGAAGCGATTTT</pcr_primer_p1>
		<pcr_primer_p2>GCTACTCGTTGCTATTCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGACTTCAGGAAGCGATTTTTGAAGTCGGAAGCGGACATTCTCGGAAGTCGGATATCGGAAAGCTAAGCGTACACTATTAATTGCTTTTCATTTTCTTAAAAAAATTGATTTCGGTCATTTGGTAAAAGGGGGACGTTCAGTGATAAACACCTAGCCATGAACCCCAAACAATGGCGACCCGAGGCCTTTTAGTACTTTTTTTACTTCCATGACGTCAGTCTTCTAAAAAAATGAATAGCAACGAGTAGC</canonical_amplicon>
		<polymorphic_amplicon>AGACTTCAGGAAGCGATTTTTGAAGTCGGAAGCGGACATTCTCGGAAGTCGGATATCGGAAAGCTAAGCGTACACTATTAATTGCTTTTCATTTTCTTWAAAAAATTGATTTCGGTCATTTGGTAAAAGGGGGACGTTCAGTGATAAACACCTAGCCATGAACCCCAAACAATGGCGACCCGAGGCCTTTTAGTACTTTTTTTACTTCCATGACGTCAGTCTTCTAAAAAAATGAATAGCAACGAGTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27044</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>100937</contig_pos>
        <strand></strand>
        <context>cattttcttw[A/T]waaaattgat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGGATATCGGAAAGCTAAGCGTACACTATTAATTGCTTTTCATTTTCTTA</left_flank>
        <right_flank>AAAAATTGATTTCGGTCATTTGGTAAAAGGGGGACGTTCAGTGATAAACA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACAACCACCTCCCACTGATTTCCTAACCCCGTAAACGGATATAAAATAGAGATTATCCTCGAAATCAGTAGGTCAGTGGACACGTGGATATCGAGTTACACAATTTGTATGGAGAGTAGGAGAGAGGAGGTAATGAGACACTGTAGTTGGATAACTATTACGTAAGTATGAGCGATAACGTGCTGGTAGGGCAAACAAACTTCATGAGGTGCAGAAAATAAGAAGAACTCCATGGCCTAGGAAAATGAAAAAAAGAAAAACTAGTCCACATTGTTAATACAAAATCACTTCATTTTATATTCAATTTTCAAGCTTTTCAAGAATTTGTTTATAAAGTTAAAAACAAACAGATAACATTTATTATAACAGTTTCTAAAAGATCAGAACATTGAAAATAGAGACTTCAGGAAGCGATTTTTGAAGTCGGAAGCGGACATTCTCGGAAGTCGGATATCGGAAAGCTAAGCGTACACTATTAATTGCTTTTCATTTTCTTAAAAAAATTGATTTCGGTCATTTGGTAAAAGGGGGACGTTCAGTGATAAACACCTAGCCATGAACCCCAAACAATGGCGACCCGAGGCCTTTTAGTACTTTTTTTACTTCCATGACGTCAGTCTTCTAAAAAAATGAATAGCAACGAGTAGCGCATGCGTAGCTTCCGAGCATCCGTCCTCCAACCATCATCCTGTGTTGCTGACTCATTCCGTGATCCAACCAGATTGACTGCTCTCCTGCTTGCTTTTTATCGTTGATCATCTCCCATCAATTGAACCATAAAAGCTTCCCTGGAATCACGTTTCAACTCGGACTCCTCATCGACTCCTCTGTCCGACTTCTTGTTGAATTCTCCAGCTTATATAGCCCCTGTAAATCAGATCTGAAGATAAAATAAGAAAAGATTTCATGAAAGTAGCACGCGGAAATGTTGTAACTTTTTTTTAGATTACTGTAGTTTTCGACTATAATCAGTTGCAATCACCACGCTGAAAATTTTG</canonical>
            <polymorphic>AAACAACCACCTCCCACTGATTTCCTAACCCCGTAAACGGATATAAAATAGAGATTATCCTCGAAATCAGTAGGTCAGTGGACACGTGGATATCGAGTTACACAATTTGTATGGAGAGTAGGAGAGAGGAGGTAATGAGACACTGTAGTTGGATAACTATTACGTAAGTATGAGCGATAACGTGCTGGTAGGGCAAACAAACTTCATGAGGTGCAGAAAATAAGAAGAACTCCATGGCCTAGGAAAATGAAAAAAAGAAAAACTAGTCCACATTGTTAATACAAAATCACTTCATTTTATATTCAATTTTCAAGCTTTTCAAGAATTTGTTTATAAAGTTAAAAACAAACAGATAACATTTATTATAACAGTTTCTAAAAGATCAGAACATTGAAAATAGAGACTTCAGGAAGCGATTTTTGAAGTCGGAAGCGGACATTCTCGGAAGTCGGATATCGGAAAGCTAAGCGTACACTATTAATTGCTTTTCATTTTCTTAWAAAAATTGATTTCGGTCATTTGGTAAAAGGGGGACGTTCAGTGATAAACACCTAGCCATGAACCCCAAACAATGGCGACCCGAGGCCTTTTAGTACTTTTTTTACTTCCATGACGTCAGTCTTCTAAAAAAATGAATAGCAACGAGTAGCGCATGCGTAGCTTCCGAGCATCCGTCCTCCAACCATCATCCTGTGTTGCTGACTCATTCCGTGATCCAACCAGATTGACTGCTCTCCTGCTTGCTTTTTATCGTTGATCATCTCCCATCAATTGAACCATAAAAGCTTCCCTGGAATCACGTTTCAACTCGGACTCCTCATCGACTCCTCTGTCCGACTTCTTGTTGAATTCTCCAGCTTATATAGCCCCTGTAAATCAGATCTGAAGATAAAATAAGAAAAGATTTCATGAAAGTAGCACGCGGAAATGTTGTAACTTTTTTTTAGATTACTGTAGTTTTCGACTATAATCAGTTGCAATCACCACGCTGAAAATTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>503 276 139 63 19</canonical_bands>
                <polymorphic_bands>522 276 139 63</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACTTCAGGAAGCGATTTT</pcr_primer_p1>
		<pcr_primer_p2>GCTACTCGTTGCTATTCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGACTTCAGGAAGCGATTTTTGAAGTCGGAAGCGGACATTCTCGGAAGTCGGATATCGGAAAGCTAAGCGTACACTATTAATTGCTTTTCATTTTCTTAAAAAAATTGATTTCGGTCATTTGGTAAAAGGGGGACGTTCAGTGATAAACACCTAGCCATGAACCCCAAACAATGGCGACCCGAGGCCTTTTAGTACTTTTTTTACTTCCATGACGTCAGTCTTCTAAAAAAATGAATAGCAACGAGTAGC</canonical_amplicon>
		<polymorphic_amplicon>AGACTTCAGGAAGCGATTTTTGAAGTCGGAAGCGGACATTCTCGGAAGTCGGATATCGGAAAGCTAAGCGTACACTATTAATTGCTTTTCATTTTCTTAWAAAAATTGATTTCGGTCATTTGGTAAAAGGGGGACGTTCAGTGATAAACACCTAGCCATGAACCCCAAACAATGGCGACCCGAGGCCTTTTAGTACTTTTTTTACTTCCATGACGTCAGTCTTCTAAAAAAATGAATAGCAACGAGTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27045</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>100938</contig_pos>
        <strand></strand>
        <context>attttcttww[A/T]aaaattgatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGATATCGGAAAGCTAAGCGTACACTATTAATTGCTTTTCATTTTCTTAA</left_flank>
        <right_flank>AAAATTGATTTCGGTCATTTGGTAAAAGGGGGACGTTCAGTGATAAACAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAACCACCTCCCACTGATTTCCTAACCCCGTAAACGGATATAAAATAGAGATTATCCTCGAAATCAGTAGGTCAGTGGACACGTGGATATCGAGTTACACAATTTGTATGGAGAGTAGGAGAGAGGAGGTAATGAGACACTGTAGTTGGATAACTATTACGTAAGTATGAGCGATAACGTGCTGGTAGGGCAAACAAACTTCATGAGGTGCAGAAAATAAGAAGAACTCCATGGCCTAGGAAAATGAAAAAAAGAAAAACTAGTCCACATTGTTAATACAAAATCACTTCATTTTATATTCAATTTTCAAGCTTTTCAAGAATTTGTTTATAAAGTTAAAAACAAACAGATAACATTTATTATAACAGTTTCTAAAAGATCAGAACATTGAAAATAGAGACTTCAGGAAGCGATTTTTGAAGTCGGAAGCGGACATTCTCGGAAGTCGGATATCGGAAAGCTAAGCGTACACTATTAATTGCTTTTCATTTTCTTAAAAAAATTGATTTCGGTCATTTGGTAAAAGGGGGACGTTCAGTGATAAACACCTAGCCATGAACCCCAAACAATGGCGACCCGAGGCCTTTTAGTACTTTTTTTACTTCCATGACGTCAGTCTTCTAAAAAAATGAATAGCAACGAGTAGCGCATGCGTAGCTTCCGAGCATCCGTCCTCCAACCATCATCCTGTGTTGCTGACTCATTCCGTGATCCAACCAGATTGACTGCTCTCCTGCTTGCTTTTTATCGTTGATCATCTCCCATCAATTGAACCATAAAAGCTTCCCTGGAATCACGTTTCAACTCGGACTCCTCATCGACTCCTCTGTCCGACTTCTTGTTGAATTCTCCAGCTTATATAGCCCCTGTAAATCAGATCTGAAGATAAAATAAGAAAAGATTTCATGAAAGTAGCACGCGGAAATGTTGTAACTTTTTTTTAGATTACTGTAGTTTTCGACTATAATCAGTTGCAATCACCACGCTGAAAATTTTGC</canonical>
            <polymorphic>AACAACCACCTCCCACTGATTTCCTAACCCCGTAAACGGATATAAAATAGAGATTATCCTCGAAATCAGTAGGTCAGTGGACACGTGGATATCGAGTTACACAATTTGTATGGAGAGTAGGAGAGAGGAGGTAATGAGACACTGTAGTTGGATAACTATTACGTAAGTATGAGCGATAACGTGCTGGTAGGGCAAACAAACTTCATGAGGTGCAGAAAATAAGAAGAACTCCATGGCCTAGGAAAATGAAAAAAAGAAAAACTAGTCCACATTGTTAATACAAAATCACTTCATTTTATATTCAATTTTCAAGCTTTTCAAGAATTTGTTTATAAAGTTAAAAACAAACAGATAACATTTATTATAACAGTTTCTAAAAGATCAGAACATTGAAAATAGAGACTTCAGGAAGCGATTTTTGAAGTCGGAAGCGGACATTCTCGGAAGTCGGATATCGGAAAGCTAAGCGTACACTATTAATTGCTTTTCATTTTCTTAAWAAAATTGATTTCGGTCATTTGGTAAAAGGGGGACGTTCAGTGATAAACACCTAGCCATGAACCCCAAACAATGGCGACCCGAGGCCTTTTAGTACTTTTTTTACTTCCATGACGTCAGTCTTCTAAAAAAATGAATAGCAACGAGTAGCGCATGCGTAGCTTCCGAGCATCCGTCCTCCAACCATCATCCTGTGTTGCTGACTCATTCCGTGATCCAACCAGATTGACTGCTCTCCTGCTTGCTTTTTATCGTTGATCATCTCCCATCAATTGAACCATAAAAGCTTCCCTGGAATCACGTTTCAACTCGGACTCCTCATCGACTCCTCTGTCCGACTTCTTGTTGAATTCTCCAGCTTATATAGCCCCTGTAAATCAGATCTGAAGATAAAATAAGAAAAGATTTCATGAAAGTAGCACGCGGAAATGTTGTAACTTTTTTTTAGATTACTGTAGTTTTCGACTATAATCAGTTGCAATCACCACGCTGAAAATTTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGACTTCAGGAAGCGATTTT</pcr_primer_p1>
		<pcr_primer_p2>GCTACTCGTTGCTATTCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGACTTCAGGAAGCGATTTTTGAAGTCGGAAGCGGACATTCTCGGAAGTCGGATATCGGAAAGCTAAGCGTACACTATTAATTGCTTTTCATTTTCTTAAAAAAATTGATTTCGGTCATTTGGTAAAAGGGGGACGTTCAGTGATAAACACCTAGCCATGAACCCCAAACAATGGCGACCCGAGGCCTTTTAGTACTTTTTTTACTTCCATGACGTCAGTCTTCTAAAAAAATGAATAGCAACGAGTAGC</canonical_amplicon>
		<polymorphic_amplicon>AGACTTCAGGAAGCGATTTTTGAAGTCGGAAGCGGACATTCTCGGAAGTCGGATATCGGAAAGCTAAGCGTACACTATTAATTGCTTTTCATTTTCTTAAWAAAATTGATTTCGGTCATTTGGTAAAAGGGGGACGTTCAGTGATAAACACCTAGCCATGAACCCCAAACAATGGCGACCCGAGGCCTTTTAGTACTTTTTTTACTTCCATGACGTCAGTCTTCTAAAAAAATGAATAGCAACGAGTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27046</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>101234</contig_pos>
        <strand>+</strand>
        <context>TTCCCTGGAA[C/T]CACGTTTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTATCGTTGATCATCTCCCATCAATTGAACCATAAAAGCTTCCCTGGAA</left_flank>
        <right_flank>CACGTTTCAACTCGGACTCCTCATCGACTCCTCTGTCCGACTTCTTGTTG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATATTCAATTTTCAAGCTTTTCAAGAATTTGTTTATAAAGTTAAAAACAAACAGATAACATTTATTATAACAGTTTCTAAAAGATCAGAACATTGAAAATAGAGACTTCAGGAAGCGATTTTTGAAGTCGGAAGCGGACATTCTCGGAAGTCGGATATCGGAAAGCTAAGCGTACACTATTAATTGCTTTTCATTTTCTTAAAAAAATTGATTTCGGTCATTTGGTAAAAGGGGGACGTTCAGTGATAAACACCTAGCCATGAACCCCAAACAATGGCGACCCGAGGCCTTTTAGTACTTTTTTTACTTCCATGACGTCAGTCTTCTAAAAAAATGAATAGCAACGAGTAGCGCATGCGTAGCTTCCGAGCATCCGTCCTCCAACCATCATCCTGTGTTGCTGACTCATTCCGTGATCCAACCAGATTGACTGCTCTCCTGCTTGCTTTTTATCGTTGATCATCTCCCATCAATTGAACCATAAAAGCTTCCCTGGAATCACGTTTCAACTCGGACTCCTCATCGACTCCTCTGTCCGACTTCTTGTTGAATTCTCCAGCTTATATAGCCCCTGTAAATCAGATCTGAAGATAAAATAAGAAAAGATTTCATGAAAGTAGCACGCGGAAATGTTGTAACTTTTTTTTAGATTACTGTAGTTTTCGACTATAATCAGTTGCAATCACCACGCTGAAAATTTTGCATATTAATTTTTTGGTGGTACCAGGGATGAGAACTCGGAAAATGAGAACTGCTACATATGAGAACTCGTACGAATAAGAACTCGGAGAGTACATGGCAAACACGGATTTTTTTTGGAAAATCTTGAAGTATTGTGAAGAACAAGACCATTTCGAAAATATTTTTCAAAAAGATTGGATCCTGAGCCTGAAATTAGAGCCGGAAAACGAGTTCTTATTTTTCTAGTTCTCATATGTAGCAGTTCTCATTTTCCGAGTTCTCATCCCTGGTACCACCAATTTTTTTCATCCAATTCTG</canonical>
            <polymorphic>TATATTCAATTTTCAAGCTTTTCAAGAATTTGTTTATAAAGTTAAAAACAAACAGATAACATTTATTATAACAGTTTCTAAAAGATCAGAACATTGAAAATAGAGACTTCAGGAAGCGATTTTTGAAGTCGGAAGCGGACATTCTCGGAAGTCGGATATCGGAAAGCTAAGCGTACACTATTAATTGCTTTTCATTTTCTTAAAAAAATTGATTTCGGTCATTTGGTAAAAGGGGGACGTTCAGTGATAAACACCTAGCCATGAACCCCAAACAATGGCGACCCGAGGCCTTTTAGTACTTTTTTTACTTCCATGACGTCAGTCTTCTAAAAAAATGAATAGCAACGAGTAGCGCATGCGTAGCTTCCGAGCATCCGTCCTCCAACCATCATCCTGTGTTGCTGACTCATTCCGTGATCCAACCAGATTGACTGCTCTCCTGCTTGCTTTTTATCGTTGATCATCTCCCATCAATTGAACCATAAAAGCTTCCCTGGAAYCACGTTTCAACTCGGACTCCTCATCGACTCCTCTGTCCGACTTCTTGTTGAATTCTCCAGCTTATATAGCCCCTGTAAATCAGATCTGAAGATAAAATAAGAAAAGATTTCATGAAAGTAGCACGCGGAAATGTTGTAACTTTTTTTTAGATTACTGTAGTTTTCGACTATAATCAGTTGCAATCACCACGCTGAAAATTTTGCATATTAATTTTTTGGTGGTACCAGGGATGAGAACTCGGAAAATGAGAACTGCTACATATGAGAACTCGTACGAATAAGAACTCGGAGAGTACATGGCAAACACGGATTTTTTTTGGAAAATCTTGAAGTATTGTGAAGAACAAGACCATTTCGAAAATATTTTTCAAAAAGATTGGATCCTGAGCCTGAAATTAGAGCCGGAAAACGAGTTCTTATTTTTCTAGTTCTCATATGTAGCAGTTCTCATTTTCCGAGTTCTCATCCCTGGTACCACCAATTTTTTTCATCCAATTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>474 404 93 18 11</canonical_bands>
                <polymorphic_bands>474 404 111 11</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTTTTATCGTTGATCATCTC</pcr_primer_p1>
		<pcr_primer_p2>TGGTGATTGCAACTGATTATAG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GCTTTTTATCGTTGATCATCTCCCATCAATTGAACCATAAAAGCTTCCCTGGAATCACGTTTCAACTCGGACTCCTCATCGACTCCTCTGTCCGACTTCTTGTTGAATTCTCCAGCTTATATAGCCCCTGTAAATCAGATCTGAAGATAAAATAAGAAAAGATTTCATGAAAGTAGCACGCGGAAATGTTGTAACTTTTTTTTAGATTACTGTAGTTTTCGACTATAATCAGTTGCAATCACCA</canonical_amplicon>
		<polymorphic_amplicon>GCTTTTTATCGTTGATCATCTCCCATCAATTGAACCATAAAAGCTTCCCTGGAAYCACGTTTCAACTCGGACTCCTCATCGACTCCTCTGTCCGACTTCTTGTTGAATTCTCCAGCTTATATAGCCCCTGTAAATCAGATCTGAAGATAAAATAAGAAAAGATTTCATGAAAGTAGCACGCGGAAATGTTGTAACTTTTTTTTAGATTACTGTAGTTTTCGACTATAATCAGTTGCAATCACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27047</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>101342</contig_pos>
        <strand>+</strand>
        <context>TAAGAAAAGA[G/T]TTCATGAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAGCTTATATAGCCCCTGTAAATCAGATCTGAAGATAAAATAAGAAAAGA</left_flank>
        <right_flank>TTCATGAAAGTAGCACGCGGAAATGTTGTAACTTTTTTTTAGATTACTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGGAAGCGATTTTTGAAGTCGGAAGCGGACATTCTCGGAAGTCGGATATCGGAAAGCTAAGCGTACACTATTAATTGCTTTTCATTTTCTTAAAAAAATTGATTTCGGTCATTTGGTAAAAGGGGGACGTTCAGTGATAAACACCTAGCCATGAACCCCAAACAATGGCGACCCGAGGCCTTTTAGTACTTTTTTTACTTCCATGACGTCAGTCTTCTAAAAAAATGAATAGCAACGAGTAGCGCATGCGTAGCTTCCGAGCATCCGTCCTCCAACCATCATCCTGTGTTGCTGACTCATTCCGTGATCCAACCAGATTGACTGCTCTCCTGCTTGCTTTTTATCGTTGATCATCTCCCATCAATTGAACCATAAAAGCTTCCCTGGAATCACGTTTCAACTCGGACTCCTCATCGACTCCTCTGTCCGACTTCTTGTTGAATTCTCCAGCTTATATAGCCCCTGTAAATCAGATCTGAAGATAAAATAAGAAAAGATTTCATGAAAGTAGCACGCGGAAATGTTGTAACTTTTTTTTAGATTACTGTAGTTTTCGACTATAATCAGTTGCAATCACCACGCTGAAAATTTTGCATATTAATTTTTTGGTGGTACCAGGGATGAGAACTCGGAAAATGAGAACTGCTACATATGAGAACTCGTACGAATAAGAACTCGGAGAGTACATGGCAAACACGGATTTTTTTTGGAAAATCTTGAAGTATTGTGAAGAACAAGACCATTTCGAAAATATTTTTCAAAAAGATTGGATCCTGAGCCTGAAATTAGAGCCGGAAAACGAGTTCTTATTTTTCTAGTTCTCATATGTAGCAGTTCTCATTTTCCGAGTTCTCATCCCTGGTACCACCAATTTTTTTCATCCAATTCTGAATTTGTCTTTTTTTTCTCAAATTTTCCGACAGCATTATTTGAATTCCAGAACTACAGATTTTTTTCAATTCATTCAAAATTTTCGGTTTTTATGGTTTTTTTTATTT</canonical>
            <polymorphic>TCAGGAAGCGATTTTTGAAGTCGGAAGCGGACATTCTCGGAAGTCGGATATCGGAAAGCTAAGCGTACACTATTAATTGCTTTTCATTTTCTTAAAAAAATTGATTTCGGTCATTTGGTAAAAGGGGGACGTTCAGTGATAAACACCTAGCCATGAACCCCAAACAATGGCGACCCGAGGCCTTTTAGTACTTTTTTTACTTCCATGACGTCAGTCTTCTAAAAAAATGAATAGCAACGAGTAGCGCATGCGTAGCTTCCGAGCATCCGTCCTCCAACCATCATCCTGTGTTGCTGACTCATTCCGTGATCCAACCAGATTGACTGCTCTCCTGCTTGCTTTTTATCGTTGATCATCTCCCATCAATTGAACCATAAAAGCTTCCCTGGAATCACGTTTCAACTCGGACTCCTCATCGACTCCTCTGTCCGACTTCTTGTTGAATTCTCCAGCTTATATAGCCCCTGTAAATCAGATCTGAAGATAAAATAAGAAAAGAKTTCATGAAAGTAGCACGCGGAAATGTTGTAACTTTTTTTTAGATTACTGTAGTTTTCGACTATAATCAGTTGCAATCACCACGCTGAAAATTTTGCATATTAATTTTTTGGTGGTACCAGGGATGAGAACTCGGAAAATGAGAACTGCTACATATGAGAACTCGTACGAATAAGAACTCGGAGAGTACATGGCAAACACGGATTTTTTTTGGAAAATCTTGAAGTATTGTGAAGAACAAGACCATTTCGAAAATATTTTTCAAAAAGATTGGATCCTGAGCCTGAAATTAGAGCCGGAAAACGAGTTCTTATTTTTCTAGTTCTCATATGTAGCAGTTCTCATTTTCCGAGTTCTCATCCCTGGTACCACCAATTTTTTTCATCCAATTCTGAATTTGTCTTTTTTTTCTCAAATTTTCCGACAGCATTATTTGAATTCCAGAACTACAGATTTTTTTCAATTCATTCAAAATTTTCGGTTTTTATGGTTTTTTTTATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTTTTATCGTTGATCATCTC</pcr_primer_p1>
		<pcr_primer_p2>TGGTGATTGCAACTGATTATAG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GCTTTTTATCGTTGATCATCTCCCATCAATTGAACCATAAAAGCTTCCCTGGAATCACGTTTCAACTCGGACTCCTCATCGACTCCTCTGTCCGACTTCTTGTTGAATTCTCCAGCTTATATAGCCCCTGTAAATCAGATCTGAAGATAAAATAAGAAAAGATTTCATGAAAGTAGCACGCGGAAATGTTGTAACTTTTTTTTAGATTACTGTAGTTTTCGACTATAATCAGTTGCAATCACCA</canonical_amplicon>
		<polymorphic_amplicon>GCTTTTTATCGTTGATCATCTCCCATCAATTGAACCATAAAAGCTTCCCTGGAATCACGTTTCAACTCGGACTCCTCATCGACTCCTCTGTCCGACTTCTTGTTGAATTCTCCAGCTTATATAGCCCCTGTAAATCAGATCTGAAGATAAAATAAGAAAAGAKTTCATGAAAGTAGCACGCGGAAATGTTGTAACTTTTTTTTAGATTACTGTAGTTTTCGACTATAATCAGTTGCAATCACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27048</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>105821</contig_pos>
        <strand>+</strand>
        <context>TTTTTTCAAT[C/T]GAATTGTCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTGCTGGATTTGTTAGCTGAACCGAATCTATAATTTTTCTTTTTTCAAT</left_flank>
        <right_flank>GAATTGTCTCATTTTTCTCATTTTCTACACGGGCCGATTTTGACTCTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCGCTATGTTCCCCGATTCCATATTGTCCGATGCGACTGTTTTGGCAATCCAATCTTCTCAACTTTCAAAAGTTTCGTATTCGATCACACGGATTTTATTGCAGTAACGGCTTATCAGAATATAGAGGTATTACATACTCCAGTTTCAATCTTTTCATAATTTTCAAATTTTCAGGTAACAGCCAAAAAAATCGCCAACAACCCGTTTGCAAAGGGTTTCCGGAAACCAAATCTTGAAGAGAAACAACGAAGGAATAGTCGAGTTTTGAAGAAACAAGAAACCGTGGAATCTTCTTCAGAAGACATGGATCAACCTTCGATTTTGCCAAATATTTCTAATGAATTGATGGCTCAGTGGCAATTGGCACTATTCTCTTCATATGGATCTATTCAACCAGAGCCTCTGAATCTCAAAATTCCAGATATTCCAAAGAAAAGTGGATTCGGAGTGCTGGATTTGTTAGCTGAACCGAATCTATAATTTTTCTTTTTTCAATTGAATTGTCTCATTTTTCTCATTTTCTACACGGGCCGATTTTGACTCTTTCTTATTTGCTACTATTTCAGTTATTTGACCTATTTAATAAATTATTACTCATGTTATTGGACTCGGTGAAAAAACAACATTTTAATGAAATGTATGGATTATTCAAAATTATTCATTAGTTTATAGTTTCGGGGTTATTAAATGTTCTGACTTCCAGAATAGAAATTTTTACAAGTGTGGATTGTAAAGATCAAAGGGTGATCTTCAAGATTAATAGAAAGCATGAATCACTTGGGTTCAAGCGAGGGGGTCAGAAAGCGCGCTCCAGCAAACTCGTAGGCCAGAAGAAATTTAATAATTTTAAAGTGGACGCGGGTTTGATCTAGATCATGATCTATTTCTTAAAAATCAACTGGTTTCAAAGCGTGCTTTTTCGCTCTCCATTTAAAACTGTGAAACTCAGCCAACGAAATTCGGCAGCGAATTTAGAATTTTTCCTGAATTTACTGGG</canonical>
            <polymorphic>CATCGCTATGTTCCCCGATTCCATATTGTCCGATGCGACTGTTTTGGCAATCCAATCTTCTCAACTTTCAAAAGTTTCGTATTCGATCACACGGATTTTATTGCAGTAACGGCTTATCAGAATATAGAGGTATTACATACTCCAGTTTCAATCTTTTCATAATTTTCAAATTTTCAGGTAACAGCCAAAAAAATCGCCAACAACCCGTTTGCAAAGGGTTTCCGGAAACCAAATCTTGAAGAGAAACAACGAAGGAATAGTCGAGTTTTGAAGAAACAAGAAACCGTGGAATCTTCTTCAGAAGACATGGATCAACCTTCGATTTTGCCAAATATTTCTAATGAATTGATGGCTCAGTGGCAATTGGCACTATTCTCTTCATATGGATCTATTCAACCAGAGCCTCTGAATCTCAAAATTCCAGATATTCCAAAGAAAAGTGGATTCGGAGTGCTGGATTTGTTAGCTGAACCGAATCTATAATTTTTCTTTTTTCAATYGAATTGTCTCATTTTTCTCATTTTCTACACGGGCCGATTTTGACTCTTTCTTATTTGCTACTATTTCAGTTATTTGACCTATTTAATAAATTATTACTCATGTTATTGGACTCGGTGAAAAAACAACATTTTAATGAAATGTATGGATTATTCAAAATTATTCATTAGTTTATAGTTTCGGGGTTATTAAATGTTCTGACTTCCAGAATAGAAATTTTTACAAGTGTGGATTGTAAAGATCAAAGGGTGATCTTCAAGATTAATAGAAAGCATGAATCACTTGGGTTCAAGCGAGGGGGTCAGAAAGCGCGCTCCAGCAAACTCGTAGGCCAGAAGAAATTTAATAATTTTAAAGTGGACGCGGGTTTGATCTAGATCATGATCTATTTCTTAAAAATCAACTGGTTTCAAAGCGTGCTTTTTCGCTCTCCATTTAAAACTGTGAAACTCAGCCAACGAAATTCGGCAGCGAATTTAGAATTTTTCCTGAATTTACTGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>504 361 135</canonical_bands>
                <polymorphic_bands>639 361</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>175 160 125 114 87 67 65 57 55 18 15 12 11 11 8 8 7 5</canonical_bands>
                <polymorphic_bands>175 160 125 114 87 67 65 57 55 20 18 12 11 11 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTCCAGATATTCCAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGAATAATCCATACATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAAATTCCAGATATTCCAAAGAAAAGTGGATTCGGAGTGCTGGATTTGTTAGCTGAACCGAATCTATAATTTTTCTTTTTTCAATTGAATTGTCTCATTTTTCTCATTTTCTACACGGGCCGATTTTGACTCTTTCTTATTTGCTACTATTTCAGTTATTTGACCTATTTAATAAATTATTACTCATGTTATTGGACTCGGTGAAAAAACAACATTTTAATGAAATGTATGGATTATTCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAATTCCAGATATTCCAAAGAAAAGTGGATTCGGAGTGCTGGATTTGTTAGCTGAACCGAATCTATAATTTTTCTTTTTTCAATYGAATTGTCTCATTTTTCTCATTTTCTACACGGGCCGATTTTGACTCTTTCTTATTTGCTACTATTTCAGTTATTTGACCTATTTAATAAATTATTACTCATGTTATTGGACTCGGTGAAAAAACAACATTTTAATGAAATGTATGGATTATTCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27049</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>105890</contig_pos>
        <strand>+</strand>
        <context>TACTATTTCA[A/G]TTATTTGACC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTTTCTACACGGGCCGATTTTGACTCTTTCTTATTTGCTACTATTTCA</left_flank>
        <right_flank>TTATTTGACCTATTTAATAAATTATTACTCATGTTATTGGACTCGGTGAA</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGTTTCGTATTCGATCACACGGATTTTATTGCAGTAACGGCTTATCAGAATATAGAGGTATTACATACTCCAGTTTCAATCTTTTCATAATTTTCAAATTTTCAGGTAACAGCCAAAAAAATCGCCAACAACCCGTTTGCAAAGGGTTTCCGGAAACCAAATCTTGAAGAGAAACAACGAAGGAATAGTCGAGTTTTGAAGAAACAAGAAACCGTGGAATCTTCTTCAGAAGACATGGATCAACCTTCGATTTTGCCAAATATTTCTAATGAATTGATGGCTCAGTGGCAATTGGCACTATTCTCTTCATATGGATCTATTCAACCAGAGCCTCTGAATCTCAAAATTCCAGATATTCCAAAGAAAAGTGGATTCGGAGTGCTGGATTTGTTAGCTGAACCGAATCTATAATTTTTCTTTTTTCAATTGAATTGTCTCATTTTTCTCATTTTCTACACGGGCCGATTTTGACTCTTTCTTATTTGCTACTATTTCAGTTATTTGACCTATTTAATAAATTATTACTCATGTTATTGGACTCGGTGAAAAAACAACATTTTAATGAAATGTATGGATTATTCAAAATTATTCATTAGTTTATAGTTTCGGGGTTATTAAATGTTCTGACTTCCAGAATAGAAATTTTTACAAGTGTGGATTGTAAAGATCAAAGGGTGATCTTCAAGATTAATAGAAAGCATGAATCACTTGGGTTCAAGCGAGGGGGTCAGAAAGCGCGCTCCAGCAAACTCGTAGGCCAGAAGAAATTTAATAATTTTAAAGTGGACGCGGGTTTGATCTAGATCATGATCTATTTCTTAAAAATCAACTGGTTTCAAAGCGTGCTTTTTCGCTCTCCATTTAAAACTGTGAAACTCAGCCAACGAAATTCGGCAGCGAATTTAGAATTTTTCCTGAATTTACTGGGGCGCGCTTTCTGACCCCCTCGCTTGAACCCAAGATAATGTAAAATGGAGAAAAATTTGTCCGGAAATAC</canonical>
            <polymorphic>AAAAGTTTCGTATTCGATCACACGGATTTTATTGCAGTAACGGCTTATCAGAATATAGAGGTATTACATACTCCAGTTTCAATCTTTTCATAATTTTCAAATTTTCAGGTAACAGCCAAAAAAATCGCCAACAACCCGTTTGCAAAGGGTTTCCGGAAACCAAATCTTGAAGAGAAACAACGAAGGAATAGTCGAGTTTTGAAGAAACAAGAAACCGTGGAATCTTCTTCAGAAGACATGGATCAACCTTCGATTTTGCCAAATATTTCTAATGAATTGATGGCTCAGTGGCAATTGGCACTATTCTCTTCATATGGATCTATTCAACCAGAGCCTCTGAATCTCAAAATTCCAGATATTCCAAAGAAAAGTGGATTCGGAGTGCTGGATTTGTTAGCTGAACCGAATCTATAATTTTTCTTTTTTCAATTGAATTGTCTCATTTTTCTCATTTTCTACACGGGCCGATTTTGACTCTTTCTTATTTGCTACTATTTCARTTATTTGACCTATTTAATAAATTATTACTCATGTTATTGGACTCGGTGAAAAAACAACATTTTAATGAAATGTATGGATTATTCAAAATTATTCATTAGTTTATAGTTTCGGGGTTATTAAATGTTCTGACTTCCAGAATAGAAATTTTTACAAGTGTGGATTGTAAAGATCAAAGGGTGATCTTCAAGATTAATAGAAAGCATGAATCACTTGGGTTCAAGCGAGGGGGTCAGAAAGCGCGCTCCAGCAAACTCGTAGGCCAGAAGAAATTTAATAATTTTAAAGTGGACGCGGGTTTGATCTAGATCATGATCTATTTCTTAAAAATCAACTGGTTTCAAAGCGTGCTTTTTCGCTCTCCATTTAAAACTGTGAAACTCAGCCAACGAAATTCGGCAGCGAATTTAGAATTTTTCCTGAATTTACTGGGGCGCGCTTTCTGACCCCCTCGCTTGAACCCAAGATAATGTAAAATGGAGAAAAATTTGTCCGGAAATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTCTCATTTTTCTCATTTTCT</pcr_primer_p1>
		<pcr_primer_p2>AGATCACCCTTTGATCTTTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGTCTCATTTTTCTCATTTTCTACACGGGCCGATTTTGACTCTTTCTTATTTGCTACTATTTCAGTTATTTGACCTATTTAATAAATTATTACTCATGTTATTGGACTCGGTGAAAAAACAACATTTTAATGAAATGTATGGATTATTCAAAATTATTCATTAGTTTATAGTTTCGGGGTTATTAAATGTTCTGACTTCCAGAATAGAAATTTTTACAAGTGTGGATTGTAAAGATCAAAGGGTGATCT</canonical_amplicon>
		<polymorphic_amplicon>TTGTCTCATTTTTCTCATTTTCTACACGGGCCGATTTTGACTCTTTCTTATTTGCTACTATTTCARTTATTTGACCTATTTAATAAATTATTACTCATGTTATTGGACTCGGTGAAAAAACAACATTTTAATGAAATGTATGGATTATTCAAAATTATTCATTAGTTTATAGTTTCGGGGTTATTAAATGTTCTGACTTCCAGAATAGAAATTTTTACAAGTGTGGATTGTAAAGATCAAAGGGTGATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27050</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>107220</contig_pos>
        <strand></strand>
        <context>tccaataaat[G/T]acctacaTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGATTTTGAATAAAATCAATTCTGAGTCCACACGGCTTCATCCAATAAAT</left_flank>
        <right_flank>ACCTACATGGTGGCGCATAATTACCTGGACTCAAATTTCCACTAGCACCA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCTATCAAATAATCCAAAAATTGCTTTCTGTGGTCTTGTAGATGTTAGTTTCACTCTTTTAGTTTTTCTTAATGTTGCTGCTCATCGAAAAACTGTGTTTTTAAGTCGTTCGCCTCATTTAAATGCCAAAGAACTTTTTATCCGAAATACTCCGAAATTATCCGAAAAAAGTCGGAGAAAAAGTCGGATATCCGATTCTCCGAGAAAAAATTTCGGATGAAAAACCGTGTATCCGATTCTCCGAAAACTTTTCTCCGACCAAGCCTGGTTGCATGCCTACAAAAGTTTATATAGAATTCTAATGAAAATTGTAGAAATTTTTTAATTAAAGTAGAGCTATAATTTAGAAGTGATACACTTTTATGGAACTTTCTAGGTTTTTGAAATGCGAATCTTCGAATGTTTAATTTATAAGAATGTTATAATAGATTATAAGAATGTTATAATAGATTTTGAATAAAATCAATTCTGAGTCCACACGGCTTCATCCAATAAATGACCTACATGGTGGCGCATAATTACCTGGACTCAAATTTCCACTAGCACCAACATCGAGTAAAGCGTTGTACTGGGCTCAAATTTGCAGTGCAAAAATTCAAATAGTTTATCAGTAAACTGACCAAAGTTCAAGTCATTTGATCAACTTTGAGTTGAGTTATCGTTTCTCAAATTTGCTTCATCTCATGAGAATGTGCAACATTACGTCATGCATCTTTAGACAATCATAACAATACCTAGACTTCAGGAATAGCTTTGAAAATCTCAGTAGCTTTGAATCAAACGTAAAATTTGATTTCTAACGATTTTCTTGCTTCCAAGACACTCATGTCTAACGATACACCCGTTTTTATCAGTCCGGGTCATTTAGCGCCACATTGTAAAGTTAGAAAAAAAATCTACAGTAACCTTCATTGATTATCTCAACGTGTTTATATAATCACTTGCTGTCACTTATCGTGTTCTTGACAGTAGTCAATGTATCTATGTATTCTATGGCA</canonical>
            <polymorphic>GAGCTATCAAATAATCCAAAAATTGCTTTCTGTGGTCTTGTAGATGTTAGTTTCACTCTTTTAGTTTTTCTTAATGTTGCTGCTCATCGAAAAACTGTGTTTTTAAGTCGTTCGCCTCATTTAAATGCCAAAGAACTTTTTATCCGAAATACTCCGAAATTATCCGAAAAAAGTCGGAGAAAAAGTCGGATATCCGATTCTCCGAGAAAAAATTTCGGATGAAAAACCGTGTATCCGATTCTCCGAAAACTTTTCTCCGACCAAGCCTGGTTGCATGCCTACAAAAGTTTATATAGAATTCTAATGAAAATTGTAGAAATTTTTTAATTAAAGTAGAGCTATAATTTAGAAGTGATACACTTTTATGGAACTTTCTAGGTTTTTGAAATGCGAATCTTCGAATGTTTAATTTATAAGAATGTTATAATAGATTATAAGAATGTTATAATAGATTTTGAATAAAATCAATTCTGAGTCCACACGGCTTCATCCAATAAATKACCTACATGGTGGCGCATAATTACCTGGACTCAAATTTCCACTAGCACCAACATCGAGTAAAGCGTTGTACTGGGCTCAAATTTGCAGTGCAAAAATTCAAATAGTTTATCAGTAAACTGACCAAAGTTCAAGTCATTTGATCAACTTTGAGTTGAGTTATCGTTTCTCAAATTTGCTTCATCTCATGAGAATGTGCAACATTACGTCATGCATCTTTAGACAATCATAACAATACCTAGACTTCAGGAATAGCTTTGAAAATCTCAGTAGCTTTGAATCAAACGTAAAATTTGATTTCTAACGATTTTCTTGCTTCCAAGACACTCATGTCTAACGATACACCCGTTTTTATCAGTCCGGGTCATTTAGCGCCACATTGTAAAGTTAGAAAAAAAATCTACAGTAACCTTCATTGATTATCTCAACGTGTTTATATAATCACTTGCTGTCACTTATCGTGTTCTTGACAGTAGTCAATGTATCTATGTATTCTATGGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCGAATGTTTAATTTATAAGAATG</pcr_primer_p1>
		<pcr_primer_p2>TCAATGAAGGTTACTGTAGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>522</pcr_amplicon_size>
		<canonical_amplicon>CTTCGAATGTTTAATTTATAAGAATGTTATAATAGATTATAAGAATGTTATAATAGATTTTGAATAAAATCAATTCTGAGTCCACACGGCTTCATCCAATAAATGACCTACATGGTGGCGCATAATTACCTGGACTCAAATTTCCACTAGCACCAACATCGAGTAAAGCGTTGTACTGGGCTCAAATTTGCAGTGCAAAAATTCAAATAGTTTATCAGTAAACTGACCAAAGTTCAAGTCATTTGATCAACTTTGAGTTGAGTTATCGTTTCTCAAATTTGCTTCATCTCATGAGAATGTGCAACATTACGTCATGCATCTTTAGACAATCATAACAATACCTAGACTTCAGGAATAGCTTTGAAAATCTCAGTAGCTTTGAATCAAACGTAAAATTTGATTTCTAACGATTTTCTTGCTTCCAAGACACTCATGTCTAACGATACACCCGTTTTTATCAGTCCGGGTCATTTAGCGCCACATTGTAAAGTTAGAAAAAAAATCTACAGTAACCTTCATTGA</canonical_amplicon>
		<polymorphic_amplicon>CTTCGAATGTTTAATTTATAAGAATGTTATAATAGATTATAAGAATGTTATAATAGATTTTGAATAAAATCAATTCTGAGTCCACACGGCTTCATCCAATAAATKACCTACATGGTGGCGCATAATTACCTGGACTCAAATTTCCACTAGCACCAACATCGAGTAAAGCGTTGTACTGGGCTCAAATTTGCAGTGCAAAAATTCAAATAGTTTATCAGTAAACTGACCAAAGTTCAAGTCATTTGATCAACTTTGAGTTGAGTTATCGTTTCTCAAATTTGCTTCATCTCATGAGAATGTGCAACATTACGTCATGCATCTTTAGACAATCATAACAATACCTAGACTTCAGGAATAGCTTTGAAAATCTCAGTAGCTTTGAATCAAACGTAAAATTTGATTTCTAACGATTTTCTTGCTTCCAAGACACTCATGTCTAACGATACACCCGTTTTTATCAGTCCGGGTCATTTAGCGCCACATTGTAAAGTTAGAAAAAAAATCTACAGTAACCTTCATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27051</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>107259</contig_pos>
        <strand></strand>
        <context>actcaaattt[C/G]cactagcacc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATCCAATAAATGACCTACATGGTGGCGCATAATTACCTGGACTCAAATTT</left_flank>
        <right_flank>CACTAGCACCAACATCGAGTAAAGCGTTGTACTGGGCTCAAATTTGCAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAGATGTTAGTTTCACTCTTTTAGTTTTTCTTAATGTTGCTGCTCATCGAAAAACTGTGTTTTTAAGTCGTTCGCCTCATTTAAATGCCAAAGAACTTTTTATCCGAAATACTCCGAAATTATCCGAAAAAAGTCGGAGAAAAAGTCGGATATCCGATTCTCCGAGAAAAAATTTCGGATGAAAAACCGTGTATCCGATTCTCCGAAAACTTTTCTCCGACCAAGCCTGGTTGCATGCCTACAAAAGTTTATATAGAATTCTAATGAAAATTGTAGAAATTTTTTAATTAAAGTAGAGCTATAATTTAGAAGTGATACACTTTTATGGAACTTTCTAGGTTTTTGAAATGCGAATCTTCGAATGTTTAATTTATAAGAATGTTATAATAGATTATAAGAATGTTATAATAGATTTTGAATAAAATCAATTCTGAGTCCACACGGCTTCATCCAATAAATGACCTACATGGTGGCGCATAATTACCTGGACTCAAATTTCCACTAGCACCAACATCGAGTAAAGCGTTGTACTGGGCTCAAATTTGCAGTGCAAAAATTCAAATAGTTTATCAGTAAACTGACCAAAGTTCAAGTCATTTGATCAACTTTGAGTTGAGTTATCGTTTCTCAAATTTGCTTCATCTCATGAGAATGTGCAACATTACGTCATGCATCTTTAGACAATCATAACAATACCTAGACTTCAGGAATAGCTTTGAAAATCTCAGTAGCTTTGAATCAAACGTAAAATTTGATTTCTAACGATTTTCTTGCTTCCAAGACACTCATGTCTAACGATACACCCGTTTTTATCAGTCCGGGTCATTTAGCGCCACATTGTAAAGTTAGAAAAAAAATCTACAGTAACCTTCATTGATTATCTCAACGTGTTTATATAATCACTTGCTGTCACTTATCGTGTTCTTGACAGTAGTCAATGTATCTATGTATTCTATGGCACCACTTGATATCACCTCCACACCCTTCCCCTTCTCTTCT</canonical>
            <polymorphic>GTAGATGTTAGTTTCACTCTTTTAGTTTTTCTTAATGTTGCTGCTCATCGAAAAACTGTGTTTTTAAGTCGTTCGCCTCATTTAAATGCCAAAGAACTTTTTATCCGAAATACTCCGAAATTATCCGAAAAAAGTCGGAGAAAAAGTCGGATATCCGATTCTCCGAGAAAAAATTTCGGATGAAAAACCGTGTATCCGATTCTCCGAAAACTTTTCTCCGACCAAGCCTGGTTGCATGCCTACAAAAGTTTATATAGAATTCTAATGAAAATTGTAGAAATTTTTTAATTAAAGTAGAGCTATAATTTAGAAGTGATACACTTTTATGGAACTTTCTAGGTTTTTGAAATGCGAATCTTCGAATGTTTAATTTATAAGAATGTTATAATAGATTATAAGAATGTTATAATAGATTTTGAATAAAATCAATTCTGAGTCCACACGGCTTCATCCAATAAATGACCTACATGGTGGCGCATAATTACCTGGACTCAAATTTSCACTAGCACCAACATCGAGTAAAGCGTTGTACTGGGCTCAAATTTGCAGTGCAAAAATTCAAATAGTTTATCAGTAAACTGACCAAAGTTCAAGTCATTTGATCAACTTTGAGTTGAGTTATCGTTTCTCAAATTTGCTTCATCTCATGAGAATGTGCAACATTACGTCATGCATCTTTAGACAATCATAACAATACCTAGACTTCAGGAATAGCTTTGAAAATCTCAGTAGCTTTGAATCAAACGTAAAATTTGATTTCTAACGATTTTCTTGCTTCCAAGACACTCATGTCTAACGATACACCCGTTTTTATCAGTCCGGGTCATTTAGCGCCACATTGTAAAGTTAGAAAAAAAATCTACAGTAACCTTCATTGATTATCTCAACGTGTTTATATAATCACTTGCTGTCACTTATCGTGTTCTTGACAGTAGTCAATGTATCTATGTATTCTATGGCACCACTTGATATCACCTCCACACCCTTCCCCTTCTCTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCGAATGTTTAATTTATAAGAATG</pcr_primer_p1>
		<pcr_primer_p2>TCAATGAAGGTTACTGTAGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>522</pcr_amplicon_size>
		<canonical_amplicon>CTTCGAATGTTTAATTTATAAGAATGTTATAATAGATTATAAGAATGTTATAATAGATTTTGAATAAAATCAATTCTGAGTCCACACGGCTTCATCCAATAAATGACCTACATGGTGGCGCATAATTACCTGGACTCAAATTTCCACTAGCACCAACATCGAGTAAAGCGTTGTACTGGGCTCAAATTTGCAGTGCAAAAATTCAAATAGTTTATCAGTAAACTGACCAAAGTTCAAGTCATTTGATCAACTTTGAGTTGAGTTATCGTTTCTCAAATTTGCTTCATCTCATGAGAATGTGCAACATTACGTCATGCATCTTTAGACAATCATAACAATACCTAGACTTCAGGAATAGCTTTGAAAATCTCAGTAGCTTTGAATCAAACGTAAAATTTGATTTCTAACGATTTTCTTGCTTCCAAGACACTCATGTCTAACGATACACCCGTTTTTATCAGTCCGGGTCATTTAGCGCCACATTGTAAAGTTAGAAAAAAAATCTACAGTAACCTTCATTGA</canonical_amplicon>
		<polymorphic_amplicon>CTTCGAATGTTTAATTTATAAGAATGTTATAATAGATTATAAGAATGTTATAATAGATTTTGAATAAAATCAATTCTGAGTCCACACGGCTTCATCCAATAAATGACCTACATGGTGGCGCATAATTACCTGGACTCAAATTTSCACTAGCACCAACATCGAGTAAAGCGTTGTACTGGGCTCAAATTTGCAGTGCAAAAATTCAAATAGTTTATCAGTAAACTGACCAAAGTTCAAGTCATTTGATCAACTTTGAGTTGAGTTATCGTTTCTCAAATTTGCTTCATCTCATGAGAATGTGCAACATTACGTCATGCATCTTTAGACAATCATAACAATACCTAGACTTCAGGAATAGCTTTGAAAATCTCAGTAGCTTTGAATCAAACGTAAAATTTGATTTCTAACGATTTTCTTGCTTCCAAGACACTCATGTCTAACGATACACCCGTTTTTATCAGTCCGGGTCATTTAGCGCCACATTGTAAAGTTAGAAAAAAAATCTACAGTAACCTTCATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27052</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>107295</contig_pos>
        <strand></strand>
        <context>gttgtactgg[G/A]ctcaaatttg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTGGACTCAAATTTCCACTAGCACCAACATCGAGTAAAGCGTTGTACTGG</left_flank>
        <right_flank>CTCAAATTTGCAGTGCAAAAATTCAAATAGTTTATCAGTAAACTGACCAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTGCTGCTCATCGAAAAACTGTGTTTTTAAGTCGTTCGCCTCATTTAAATGCCAAAGAACTTTTTATCCGAAATACTCCGAAATTATCCGAAAAAAGTCGGAGAAAAAGTCGGATATCCGATTCTCCGAGAAAAAATTTCGGATGAAAAACCGTGTATCCGATTCTCCGAAAACTTTTCTCCGACCAAGCCTGGTTGCATGCCTACAAAAGTTTATATAGAATTCTAATGAAAATTGTAGAAATTTTTTAATTAAAGTAGAGCTATAATTTAGAAGTGATACACTTTTATGGAACTTTCTAGGTTTTTGAAATGCGAATCTTCGAATGTTTAATTTATAAGAATGTTATAATAGATTATAAGAATGTTATAATAGATTTTGAATAAAATCAATTCTGAGTCCACACGGCTTCATCCAATAAATGACCTACATGGTGGCGCATAATTACCTGGACTCAAATTTCCACTAGCACCAACATCGAGTAAAGCGTTGTACTGGGCTCAAATTTGCAGTGCAAAAATTCAAATAGTTTATCAGTAAACTGACCAAAGTTCAAGTCATTTGATCAACTTTGAGTTGAGTTATCGTTTCTCAAATTTGCTTCATCTCATGAGAATGTGCAACATTACGTCATGCATCTTTAGACAATCATAACAATACCTAGACTTCAGGAATAGCTTTGAAAATCTCAGTAGCTTTGAATCAAACGTAAAATTTGATTTCTAACGATTTTCTTGCTTCCAAGACACTCATGTCTAACGATACACCCGTTTTTATCAGTCCGGGTCATTTAGCGCCACATTGTAAAGTTAGAAAAAAAATCTACAGTAACCTTCATTGATTATCTCAACGTGTTTATATAATCACTTGCTGTCACTTATCGTGTTCTTGACAGTAGTCAATGTATCTATGTATTCTATGGCACCACTTGATATCACCTCCACACCCTTCCCCTTCTCTTCTGCTCTTCTTCAAATTTGCTTTGACAGTCTTCAGTTA</canonical>
            <polymorphic>GTTGCTGCTCATCGAAAAACTGTGTTTTTAAGTCGTTCGCCTCATTTAAATGCCAAAGAACTTTTTATCCGAAATACTCCGAAATTATCCGAAAAAAGTCGGAGAAAAAGTCGGATATCCGATTCTCCGAGAAAAAATTTCGGATGAAAAACCGTGTATCCGATTCTCCGAAAACTTTTCTCCGACCAAGCCTGGTTGCATGCCTACAAAAGTTTATATAGAATTCTAATGAAAATTGTAGAAATTTTTTAATTAAAGTAGAGCTATAATTTAGAAGTGATACACTTTTATGGAACTTTCTAGGTTTTTGAAATGCGAATCTTCGAATGTTTAATTTATAAGAATGTTATAATAGATTATAAGAATGTTATAATAGATTTTGAATAAAATCAATTCTGAGTCCACACGGCTTCATCCAATAAATGACCTACATGGTGGCGCATAATTACCTGGACTCAAATTTCCACTAGCACCAACATCGAGTAAAGCGTTGTACTGGRCTCAAATTTGCAGTGCAAAAATTCAAATAGTTTATCAGTAAACTGACCAAAGTTCAAGTCATTTGATCAACTTTGAGTTGAGTTATCGTTTCTCAAATTTGCTTCATCTCATGAGAATGTGCAACATTACGTCATGCATCTTTAGACAATCATAACAATACCTAGACTTCAGGAATAGCTTTGAAAATCTCAGTAGCTTTGAATCAAACGTAAAATTTGATTTCTAACGATTTTCTTGCTTCCAAGACACTCATGTCTAACGATACACCCGTTTTTATCAGTCCGGGTCATTTAGCGCCACATTGTAAAGTTAGAAAAAAAATCTACAGTAACCTTCATTGATTATCTCAACGTGTTTATATAATCACTTGCTGTCACTTATCGTGTTCTTGACAGTAGTCAATGTATCTATGTATTCTATGGCACCACTTGATATCACCTCCACACCCTTCCCCTTCTCTTCTGCTCTTCTTCAAATTTGCTTTGACAGTCTTCAGTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>304 190 178 146 91 73 18</canonical_bands>
                <polymorphic_bands>304 269 190 146 73 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCGAATGTTTAATTTATAAGAATG</pcr_primer_p1>
		<pcr_primer_p2>TCAATGAAGGTTACTGTAGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>522</pcr_amplicon_size>
		<canonical_amplicon>CTTCGAATGTTTAATTTATAAGAATGTTATAATAGATTATAAGAATGTTATAATAGATTTTGAATAAAATCAATTCTGAGTCCACACGGCTTCATCCAATAAATGACCTACATGGTGGCGCATAATTACCTGGACTCAAATTTCCACTAGCACCAACATCGAGTAAAGCGTTGTACTGGGCTCAAATTTGCAGTGCAAAAATTCAAATAGTTTATCAGTAAACTGACCAAAGTTCAAGTCATTTGATCAACTTTGAGTTGAGTTATCGTTTCTCAAATTTGCTTCATCTCATGAGAATGTGCAACATTACGTCATGCATCTTTAGACAATCATAACAATACCTAGACTTCAGGAATAGCTTTGAAAATCTCAGTAGCTTTGAATCAAACGTAAAATTTGATTTCTAACGATTTTCTTGCTTCCAAGACACTCATGTCTAACGATACACCCGTTTTTATCAGTCCGGGTCATTTAGCGCCACATTGTAAAGTTAGAAAAAAAATCTACAGTAACCTTCATTGA</canonical_amplicon>
		<polymorphic_amplicon>CTTCGAATGTTTAATTTATAAGAATGTTATAATAGATTATAAGAATGTTATAATAGATTTTGAATAAAATCAATTCTGAGTCCACACGGCTTCATCCAATAAATGACCTACATGGTGGCGCATAATTACCTGGACTCAAATTTCCACTAGCACCAACATCGAGTAAAGCGTTGTACTGGRCTCAAATTTGCAGTGCAAAAATTCAAATAGTTTATCAGTAAACTGACCAAAGTTCAAGTCATTTGATCAACTTTGAGTTGAGTTATCGTTTCTCAAATTTGCTTCATCTCATGAGAATGTGCAACATTACGTCATGCATCTTTAGACAATCATAACAATACCTAGACTTCAGGAATAGCTTTGAAAATCTCAGTAGCTTTGAATCAAACGTAAAATTTGATTTCTAACGATTTTCTTGCTTCCAAGACACTCATGTCTAACGATACACCCGTTTTTATCAGTCCGGGTCATTTAGCGCCACATTGTAAAGTTAGAAAAAAAATCTACAGTAACCTTCATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27053</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>107310</contig_pos>
        <strand></strand>
        <context>aatttgcagt[G/A]caaaaattca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CACTAGCACCAACATCGAGTAAAGCGTTGTACTGGGCTCAAATTTGCAGT</left_flank>
        <right_flank>CAAAAATTCAAATAGTTTATCAGTAAACTGACCAAAGTTCAAGTCATTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACTGTGTTTTTAAGTCGTTCGCCTCATTTAAATGCCAAAGAACTTTTTATCCGAAATACTCCGAAATTATCCGAAAAAAGTCGGAGAAAAAGTCGGATATCCGATTCTCCGAGAAAAAATTTCGGATGAAAAACCGTGTATCCGATTCTCCGAAAACTTTTCTCCGACCAAGCCTGGTTGCATGCCTACAAAAGTTTATATAGAATTCTAATGAAAATTGTAGAAATTTTTTAATTAAAGTAGAGCTATAATTTAGAAGTGATACACTTTTATGGAACTTTCTAGGTTTTTGAAATGCGAATCTTCGAATGTTTAATTTATAAGAATGTTATAATAGATTATAAGAATGTTATAATAGATTTTGAATAAAATCAATTCTGAGTCCACACGGCTTCATCCAATAAATGACCTACATGGTGGCGCATAATTACCTGGACTCAAATTTCCACTAGCACCAACATCGAGTAAAGCGTTGTACTGGGCTCAAATTTGCAGTGCAAAAATTCAAATAGTTTATCAGTAAACTGACCAAAGTTCAAGTCATTTGATCAACTTTGAGTTGAGTTATCGTTTCTCAAATTTGCTTCATCTCATGAGAATGTGCAACATTACGTCATGCATCTTTAGACAATCATAACAATACCTAGACTTCAGGAATAGCTTTGAAAATCTCAGTAGCTTTGAATCAAACGTAAAATTTGATTTCTAACGATTTTCTTGCTTCCAAGACACTCATGTCTAACGATACACCCGTTTTTATCAGTCCGGGTCATTTAGCGCCACATTGTAAAGTTAGAAAAAAAATCTACAGTAACCTTCATTGATTATCTCAACGTGTTTATATAATCACTTGCTGTCACTTATCGTGTTCTTGACAGTAGTCAATGTATCTATGTATTCTATGGCACCACTTGATATCACCTCCACACCCTTCCCCTTCTCTTCTGCTCTTCTTCAAATTTGCTTTGACAGTCTTCAGTTATCCTAATAAGTACTT</canonical>
            <polymorphic>AAAACTGTGTTTTTAAGTCGTTCGCCTCATTTAAATGCCAAAGAACTTTTTATCCGAAATACTCCGAAATTATCCGAAAAAAGTCGGAGAAAAAGTCGGATATCCGATTCTCCGAGAAAAAATTTCGGATGAAAAACCGTGTATCCGATTCTCCGAAAACTTTTCTCCGACCAAGCCTGGTTGCATGCCTACAAAAGTTTATATAGAATTCTAATGAAAATTGTAGAAATTTTTTAATTAAAGTAGAGCTATAATTTAGAAGTGATACACTTTTATGGAACTTTCTAGGTTTTTGAAATGCGAATCTTCGAATGTTTAATTTATAAGAATGTTATAATAGATTATAAGAATGTTATAATAGATTTTGAATAAAATCAATTCTGAGTCCACACGGCTTCATCCAATAAATGACCTACATGGTGGCGCATAATTACCTGGACTCAAATTTCCACTAGCACCAACATCGAGTAAAGCGTTGTACTGGGCTCAAATTTGCAGTRCAAAAATTCAAATAGTTTATCAGTAAACTGACCAAAGTTCAAGTCATTTGATCAACTTTGAGTTGAGTTATCGTTTCTCAAATTTGCTTCATCTCATGAGAATGTGCAACATTACGTCATGCATCTTTAGACAATCATAACAATACCTAGACTTCAGGAATAGCTTTGAAAATCTCAGTAGCTTTGAATCAAACGTAAAATTTGATTTCTAACGATTTTCTTGCTTCCAAGACACTCATGTCTAACGATACACCCGTTTTTATCAGTCCGGGTCATTTAGCGCCACATTGTAAAGTTAGAAAAAAAATCTACAGTAACCTTCATTGATTATCTCAACGTGTTTATATAATCACTTGCTGTCACTTATCGTGTTCTTGACAGTAGTCAATGTATCTATGTATTCTATGGCACCACTTGATATCACCTCCACACCCTTCCCCTTCTCTTCTGCTCTTCTTCAAATTTGCTTTGACAGTCTTCAGTTATCCTAATAAGTACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>379 312 183 106 15 5</canonical_bands>
                <polymorphic_bands>379 312 183 111 15</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>132 128 123 120 106 69 55 43 39 33 31 29 18 12 10 10 9 9 6 6 5 3 2 2</canonical_bands>
                <polymorphic_bands>149 132 128 123 120 69 55 39 33 31 29 18 12 10 10 9 9 6 6 5 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCGAATGTTTAATTTATAAGAATG</pcr_primer_p1>
		<pcr_primer_p2>TCAATGAAGGTTACTGTAGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>522</pcr_amplicon_size>
		<canonical_amplicon>CTTCGAATGTTTAATTTATAAGAATGTTATAATAGATTATAAGAATGTTATAATAGATTTTGAATAAAATCAATTCTGAGTCCACACGGCTTCATCCAATAAATGACCTACATGGTGGCGCATAATTACCTGGACTCAAATTTCCACTAGCACCAACATCGAGTAAAGCGTTGTACTGGGCTCAAATTTGCAGTGCAAAAATTCAAATAGTTTATCAGTAAACTGACCAAAGTTCAAGTCATTTGATCAACTTTGAGTTGAGTTATCGTTTCTCAAATTTGCTTCATCTCATGAGAATGTGCAACATTACGTCATGCATCTTTAGACAATCATAACAATACCTAGACTTCAGGAATAGCTTTGAAAATCTCAGTAGCTTTGAATCAAACGTAAAATTTGATTTCTAACGATTTTCTTGCTTCCAAGACACTCATGTCTAACGATACACCCGTTTTTATCAGTCCGGGTCATTTAGCGCCACATTGTAAAGTTAGAAAAAAAATCTACAGTAACCTTCATTGA</canonical_amplicon>
		<polymorphic_amplicon>CTTCGAATGTTTAATTTATAAGAATGTTATAATAGATTATAAGAATGTTATAATAGATTTTGAATAAAATCAATTCTGAGTCCACACGGCTTCATCCAATAAATGACCTACATGGTGGCGCATAATTACCTGGACTCAAATTTCCACTAGCACCAACATCGAGTAAAGCGTTGTACTGGGCTCAAATTTGCAGTRCAAAAATTCAAATAGTTTATCAGTAAACTGACCAAAGTTCAAGTCATTTGATCAACTTTGAGTTGAGTTATCGTTTCTCAAATTTGCTTCATCTCATGAGAATGTGCAACATTACGTCATGCATCTTTAGACAATCATAACAATACCTAGACTTCAGGAATAGCTTTGAAAATCTCAGTAGCTTTGAATCAAACGTAAAATTTGATTTCTAACGATTTTCTTGCTTCCAAGACACTCATGTCTAACGATACACCCGTTTTTATCAGTCCGGGTCATTTAGCGCCACATTGTAAAGTTAGAAAAAAAATCTACAGTAACCTTCATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27054</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>107393</contig_pos>
        <strand></strand>
        <context>gtttctcaaa[T/G]ttgcttcatc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CAAAGTTCAAGTCATTTGATCAACTTTGAGTTGAGTTATCGTTTCTCAAA</left_flank>
        <right_flank>TTGCTTCATCTCATGAGAATGTGCAACATTACGTCATGCATCTTTAGACA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGGAGAAAAAGTCGGATATCCGATTCTCCGAGAAAAAATTTCGGATGAAAAACCGTGTATCCGATTCTCCGAAAACTTTTCTCCGACCAAGCCTGGTTGCATGCCTACAAAAGTTTATATAGAATTCTAATGAAAATTGTAGAAATTTTTTAATTAAAGTAGAGCTATAATTTAGAAGTGATACACTTTTATGGAACTTTCTAGGTTTTTGAAATGCGAATCTTCGAATGTTTAATTTATAAGAATGTTATAATAGATTATAAGAATGTTATAATAGATTTTGAATAAAATCAATTCTGAGTCCACACGGCTTCATCCAATAAATGACCTACATGGTGGCGCATAATTACCTGGACTCAAATTTCCACTAGCACCAACATCGAGTAAAGCGTTGTACTGGGCTCAAATTTGCAGTGCAAAAATTCAAATAGTTTATCAGTAAACTGACCAAAGTTCAAGTCATTTGATCAACTTTGAGTTGAGTTATCGTTTCTCAAATTTGCTTCATCTCATGAGAATGTGCAACATTACGTCATGCATCTTTAGACAATCATAACAATACCTAGACTTCAGGAATAGCTTTGAAAATCTCAGTAGCTTTGAATCAAACGTAAAATTTGATTTCTAACGATTTTCTTGCTTCCAAGACACTCATGTCTAACGATACACCCGTTTTTATCAGTCCGGGTCATTTAGCGCCACATTGTAAAGTTAGAAAAAAAATCTACAGTAACCTTCATTGATTATCTCAACGTGTTTATATAATCACTTGCTGTCACTTATCGTGTTCTTGACAGTAGTCAATGTATCTATGTATTCTATGGCACCACTTGATATCACCTCCACACCCTTCCCCTTCTCTTCTGCTCTTCTTCAAATTTGCTTTGACAGTCTTCAGTTATCCTAATAAGTACTTCTCCATCCGCTTTCACCCTTATAAACACGTGTTCCTCGCCGCTGTTTGTCCTATGCAATCAGTAGTGTGTTCTGTGTGTCCTG</canonical>
            <polymorphic>TCGGAGAAAAAGTCGGATATCCGATTCTCCGAGAAAAAATTTCGGATGAAAAACCGTGTATCCGATTCTCCGAAAACTTTTCTCCGACCAAGCCTGGTTGCATGCCTACAAAAGTTTATATAGAATTCTAATGAAAATTGTAGAAATTTTTTAATTAAAGTAGAGCTATAATTTAGAAGTGATACACTTTTATGGAACTTTCTAGGTTTTTGAAATGCGAATCTTCGAATGTTTAATTTATAAGAATGTTATAATAGATTATAAGAATGTTATAATAGATTTTGAATAAAATCAATTCTGAGTCCACACGGCTTCATCCAATAAATGACCTACATGGTGGCGCATAATTACCTGGACTCAAATTTCCACTAGCACCAACATCGAGTAAAGCGTTGTACTGGGCTCAAATTTGCAGTGCAAAAATTCAAATAGTTTATCAGTAAACTGACCAAAGTTCAAGTCATTTGATCAACTTTGAGTTGAGTTATCGTTTCTCAAAKTTGCTTCATCTCATGAGAATGTGCAACATTACGTCATGCATCTTTAGACAATCATAACAATACCTAGACTTCAGGAATAGCTTTGAAAATCTCAGTAGCTTTGAATCAAACGTAAAATTTGATTTCTAACGATTTTCTTGCTTCCAAGACACTCATGTCTAACGATACACCCGTTTTTATCAGTCCGGGTCATTTAGCGCCACATTGTAAAGTTAGAAAAAAAATCTACAGTAACCTTCATTGATTATCTCAACGTGTTTATATAATCACTTGCTGTCACTTATCGTGTTCTTGACAGTAGTCAATGTATCTATGTATTCTATGGCACCACTTGATATCACCTCCACACCCTTCCCCTTCTCTTCTGCTCTTCTTCAAATTTGCTTTGACAGTCTTCAGTTATCCTAATAAGTACTTCTCCATCCGCTTTCACCCTTATAAACACGTGTTCCTCGCCGCTGTTTGTCCTATGCAATCAGTAGTGTGTTCTGTGTGTCCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>262 216 123 118 86 76 46 37 21 15</canonical_bands>
                <polymorphic_bands>262 216 194 123 86 46 37 21 15</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>262 123 118 86 76 65 59 52 46 37 17 15 15 12 9 8</canonical_bands>
                <polymorphic_bands>262 194 123 86 65 59 52 46 37 17 15 15 12 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCGAATGTTTAATTTATAAGAATG</pcr_primer_p1>
		<pcr_primer_p2>TCAATGAAGGTTACTGTAGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>522</pcr_amplicon_size>
		<canonical_amplicon>CTTCGAATGTTTAATTTATAAGAATGTTATAATAGATTATAAGAATGTTATAATAGATTTTGAATAAAATCAATTCTGAGTCCACACGGCTTCATCCAATAAATGACCTACATGGTGGCGCATAATTACCTGGACTCAAATTTCCACTAGCACCAACATCGAGTAAAGCGTTGTACTGGGCTCAAATTTGCAGTGCAAAAATTCAAATAGTTTATCAGTAAACTGACCAAAGTTCAAGTCATTTGATCAACTTTGAGTTGAGTTATCGTTTCTCAAATTTGCTTCATCTCATGAGAATGTGCAACATTACGTCATGCATCTTTAGACAATCATAACAATACCTAGACTTCAGGAATAGCTTTGAAAATCTCAGTAGCTTTGAATCAAACGTAAAATTTGATTTCTAACGATTTTCTTGCTTCCAAGACACTCATGTCTAACGATACACCCGTTTTTATCAGTCCGGGTCATTTAGCGCCACATTGTAAAGTTAGAAAAAAAATCTACAGTAACCTTCATTGA</canonical_amplicon>
		<polymorphic_amplicon>CTTCGAATGTTTAATTTATAAGAATGTTATAATAGATTATAAGAATGTTATAATAGATTTTGAATAAAATCAATTCTGAGTCCACACGGCTTCATCCAATAAATGACCTACATGGTGGCGCATAATTACCTGGACTCAAATTTCCACTAGCACCAACATCGAGTAAAGCGTTGTACTGGGCTCAAATTTGCAGTGCAAAAATTCAAATAGTTTATCAGTAAACTGACCAAAGTTCAAGTCATTTGATCAACTTTGAGTTGAGTTATCGTTTCTCAAAKTTGCTTCATCTCATGAGAATGTGCAACATTACGTCATGCATCTTTAGACAATCATAACAATACCTAGACTTCAGGAATAGCTTTGAAAATCTCAGTAGCTTTGAATCAAACGTAAAATTTGATTTCTAACGATTTTCTTGCTTCCAAGACACTCATGTCTAACGATACACCCGTTTTTATCAGTCCGGGTCATTTAGCGCCACATTGTAAAGTTAGAAAAAAAATCTACAGTAACCTTCATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27055</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>107522</contig_pos>
        <strand></strand>
        <context>ttgatttcta[A/C]cgattttctt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGCTTTGAAAATCTCAGTAGCTTTGAATCAAACGTAAAATTTGATTTCTA</left_flank>
        <right_flank>CGATTTTCTTGCTTCCAAGACACTCATGTCTAACGATACACCCGTTTTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGAAAATTGTAGAAATTTTTTAATTAAAGTAGAGCTATAATTTAGAAGTGATACACTTTTATGGAACTTTCTAGGTTTTTGAAATGCGAATCTTCGAATGTTTAATTTATAAGAATGTTATAATAGATTATAAGAATGTTATAATAGATTTTGAATAAAATCAATTCTGAGTCCACACGGCTTCATCCAATAAATGACCTACATGGTGGCGCATAATTACCTGGACTCAAATTTCCACTAGCACCAACATCGAGTAAAGCGTTGTACTGGGCTCAAATTTGCAGTGCAAAAATTCAAATAGTTTATCAGTAAACTGACCAAAGTTCAAGTCATTTGATCAACTTTGAGTTGAGTTATCGTTTCTCAAATTTGCTTCATCTCATGAGAATGTGCAACATTACGTCATGCATCTTTAGACAATCATAACAATACCTAGACTTCAGGAATAGCTTTGAAAATCTCAGTAGCTTTGAATCAAACGTAAAATTTGATTTCTAACGATTTTCTTGCTTCCAAGACACTCATGTCTAACGATACACCCGTTTTTATCAGTCCGGGTCATTTAGCGCCACATTGTAAAGTTAGAAAAAAAATCTACAGTAACCTTCATTGATTATCTCAACGTGTTTATATAATCACTTGCTGTCACTTATCGTGTTCTTGACAGTAGTCAATGTATCTATGTATTCTATGGCACCACTTGATATCACCTCCACACCCTTCCCCTTCTCTTCTGCTCTTCTTCAAATTTGCTTTGACAGTCTTCAGTTATCCTAATAAGTACTTCTCCATCCGCTTTCACCCTTATAAACACGTGTTCCTCGCCGCTGTTTGTCCTATGCAATCAGTAGTGTGTTCTGTGTGTCCTGAGGTTAATCTCCTATGTGAAAAGAGTAATGAGTATGATGATAGTAGCACGGGAATTAAATAGAGATCGGGAGCTTCTAAGGTGTCATATATGAAATGTTAGTTGGAAATCTACAACTCTGGGGAAACTA</canonical>
            <polymorphic>AATGAAAATTGTAGAAATTTTTTAATTAAAGTAGAGCTATAATTTAGAAGTGATACACTTTTATGGAACTTTCTAGGTTTTTGAAATGCGAATCTTCGAATGTTTAATTTATAAGAATGTTATAATAGATTATAAGAATGTTATAATAGATTTTGAATAAAATCAATTCTGAGTCCACACGGCTTCATCCAATAAATGACCTACATGGTGGCGCATAATTACCTGGACTCAAATTTCCACTAGCACCAACATCGAGTAAAGCGTTGTACTGGGCTCAAATTTGCAGTGCAAAAATTCAAATAGTTTATCAGTAAACTGACCAAAGTTCAAGTCATTTGATCAACTTTGAGTTGAGTTATCGTTTCTCAAATTTGCTTCATCTCATGAGAATGTGCAACATTACGTCATGCATCTTTAGACAATCATAACAATACCTAGACTTCAGGAATAGCTTTGAAAATCTCAGTAGCTTTGAATCAAACGTAAAATTTGATTTCTAMCGATTTTCTTGCTTCCAAGACACTCATGTCTAACGATACACCCGTTTTTATCAGTCCGGGTCATTTAGCGCCACATTGTAAAGTTAGAAAAAAAATCTACAGTAACCTTCATTGATTATCTCAACGTGTTTATATAATCACTTGCTGTCACTTATCGTGTTCTTGACAGTAGTCAATGTATCTATGTATTCTATGGCACCACTTGATATCACCTCCACACCCTTCCCCTTCTCTTCTGCTCTTCTTCAAATTTGCTTTGACAGTCTTCAGTTATCCTAATAAGTACTTCTCCATCCGCTTTCACCCTTATAAACACGTGTTCCTCGCCGCTGTTTGTCCTATGCAATCAGTAGTGTGTTCTGTGTGTCCTGAGGTTAATCTCCTATGTGAAAAGAGTAATGAGTATGATGATAGTAGCACGGGAATTAAATAGAGATCGGGAGCTTCTAAGGTGTCATATATGAAATGTTAGTTGGAAATCTACAACTCTGGGGAAACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCGAATGTTTAATTTATAAGAATG</pcr_primer_p1>
		<pcr_primer_p2>TCAATGAAGGTTACTGTAGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>522</pcr_amplicon_size>
		<canonical_amplicon>CTTCGAATGTTTAATTTATAAGAATGTTATAATAGATTATAAGAATGTTATAATAGATTTTGAATAAAATCAATTCTGAGTCCACACGGCTTCATCCAATAAATGACCTACATGGTGGCGCATAATTACCTGGACTCAAATTTCCACTAGCACCAACATCGAGTAAAGCGTTGTACTGGGCTCAAATTTGCAGTGCAAAAATTCAAATAGTTTATCAGTAAACTGACCAAAGTTCAAGTCATTTGATCAACTTTGAGTTGAGTTATCGTTTCTCAAATTTGCTTCATCTCATGAGAATGTGCAACATTACGTCATGCATCTTTAGACAATCATAACAATACCTAGACTTCAGGAATAGCTTTGAAAATCTCAGTAGCTTTGAATCAAACGTAAAATTTGATTTCTAACGATTTTCTTGCTTCCAAGACACTCATGTCTAACGATACACCCGTTTTTATCAGTCCGGGTCATTTAGCGCCACATTGTAAAGTTAGAAAAAAAATCTACAGTAACCTTCATTGA</canonical_amplicon>
		<polymorphic_amplicon>CTTCGAATGTTTAATTTATAAGAATGTTATAATAGATTATAAGAATGTTATAATAGATTTTGAATAAAATCAATTCTGAGTCCACACGGCTTCATCCAATAAATGACCTACATGGTGGCGCATAATTACCTGGACTCAAATTTCCACTAGCACCAACATCGAGTAAAGCGTTGTACTGGGCTCAAATTTGCAGTGCAAAAATTCAAATAGTTTATCAGTAAACTGACCAAAGTTCAAGTCATTTGATCAACTTTGAGTTGAGTTATCGTTTCTCAAATTTGCTTCATCTCATGAGAATGTGCAACATTACGTCATGCATCTTTAGACAATCATAACAATACCTAGACTTCAGGAATAGCTTTGAAAATCTCAGTAGCTTTGAATCAAACGTAAAATTTGATTTCTAMCGATTTTCTTGCTTCCAAGACACTCATGTCTAACGATACACCCGTTTTTATCAGTCCGGGTCATTTAGCGCCACATTGTAAAGTTAGAAAAAAAATCTACAGTAACCTTCATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27056</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>121362</contig_pos>
        <strand>+</strand>
        <context>ACTTCTATTC[A/G]AACAAACAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTCAAAGTTCTTTTTATCTGCTGTTCAGAACTCCAGAAACTTCTATTC</left_flank>
        <right_flank>AACAAACAAAGCATTCATTCATTCATTCAGAAAAATAATCATGTCAAGTT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCAATGTAGAAACATTAGTATTACAAGACTTGTGTTTATTGCTTATTGCTTATTATGGCCTTGTGTCGTAAAAGAGAGATAGGGACATAAAAGGCAACACATGTAATATTATATTTTCAAATCGAAGTTCGAGAACTTTCGGCAAGATGCTCTACTGATAGAAGTATTTAGAATGATCCCTATTTTTGGGTTTTCAGTTCTAATCCCCTCCATTGTCGTCTGAAAGATGACTAGATATTTCTATCCGGAATCCCTGAATATAGGGCTGAAAATTGTAAATTTGGGCTGAAGGATGAAAGTGCCGGTTGAAGGGAAAACGTCAAAAATAGTGAAAGGATATGAATAACAAAACTTTTCATAATTTGATTGAACCCCAGATTTCTGGCCTTCTGGCTTCGATGATTCCGAGCTTCAAGGCTTCATAGATTTCAGATTTACAGACTTTTGGGATTCAAAGTTCTTTTTATCTGCTGTTCAGAACTCCAGAAACTTCTATTCGAACAAACAAAGCATTCATTCATTCATTCAGAAAAATAATCATGTCAAGTTCTTATTCTACTCTTCTGGCTTCTTCGTGTCGCTCTTATCCGGTTTTTTCCGCTGAAAAATGCTCAGCATTGAGAATCCGGCTGACGATGGAGCGTCGACAGAAGATGACGATGACGCTTGTTTGTTCTTCTTTTTCTGCAAAATTCGACGTTTCAAAAATATTAAAAAATTGTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAGTTTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGTTATCCGAGTACGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCTTTCAAAACTTCTTCAAAAACTCACTTCCCATCTTCCGTACTATTCGAAATTGATTTCCTTTGTTCTAACGTCGTTTCCTGTCTTTCTAAAACACGAGTGGGCGGATTC</canonical>
            <polymorphic>AGCAATGTAGAAACATTAGTATTACAAGACTTGTGTTTATTGCTTATTGCTTATTATGGCCTTGTGTCGTAAAAGAGAGATAGGGACATAAAAGGCAACACATGTAATATTATATTTTCAAATCGAAGTTCGAGAACTTTCGGCAAGATGCTCTACTGATAGAAGTATTTAGAATGATCCCTATTTTTGGGTTTTCAGTTCTAATCCCCTCCATTGTCGTCTGAAAGATGACTAGATATTTCTATCCGGAATCCCTGAATATAGGGCTGAAAATTGTAAATTTGGGCTGAAGGATGAAAGTGCCGGTTGAAGGGAAAACGTCAAAAATAGTGAAAGGATATGAATAACAAAACTTTTCATAATTTGATTGAACCCCAGATTTCTGGCCTTCTGGCTTCGATGATTCCGAGCTTCAAGGCTTCATAGATTTCAGATTTACAGACTTTTGGGATTCAAAGTTCTTTTTATCTGCTGTTCAGAACTCCAGAAACTTCTATTCRAACAAACAAAGCATTCATTCATTCATTCAGAAAAATAATCATGTCAAGTTCTTATTCTACTCTTCTGGCTTCTTCGTGTCGCTCTTATCCGGTTTTTTCCGCTGAAAAATGCTCAGCATTGAGAATCCGGCTGACGATGGAGCGTCGACAGAAGATGACGATGACGCTTGTTTGTTCTTCTTTTTCTGCAAAATTCGACGTTTCAAAAATATTAAAAAATTGTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAGTTTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGTTATCCGAGTACGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCTTTCAAAACTTCTTCAAAAACTCACTTCCCATCTTCCGTACTATTCGAAATTGATTTCCTTTGTTCTAACGTCGTTTCCTGTCTTTCTAAAACACGAGTGGGCGGATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>498 438 64</canonical_bands>
                <polymorphic_bands>936 64</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>267 172 147 124 101 69 63 50 7</canonical_bands>
                <polymorphic_bands>267 248 172 124 69 63 50 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGTCAAAAATAGTGAAAGGATA</pcr_primer_p1>
		<pcr_primer_p2>CCAGAAGAGTAGAATAAGAACTTGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACGTCAAAAATAGTGAAAGGATATGAATAACAAAACTTTTCATAATTTGATTGAACCCCAGATTTCTGGCCTTCTGGCTTCGATGATTCCGAGCTTCAAGGCTTCATAGATTTCAGATTTACAGACTTTTGGGATTCAAAGTTCTTTTTATCTGCTGTTCAGAACTCCAGAAACTTCTATTCGAACAAACAAAGCATTCATTCATTCATTCAGAAAAATAATCATGTCAAGTTCTTATTCTACTCTTCTGG</canonical_amplicon>
		<polymorphic_amplicon>ACGTCAAAAATAGTGAAAGGATATGAATAACAAAACTTTTCATAATTTGATTGAACCCCAGATTTCTGGCCTTCTGGCTTCGATGATTCCGAGCTTCAAGGCTTCATAGATTTCAGATTTACAGACTTTTGGGATTCAAAGTTCTTTTTATCTGCTGTTCAGAACTCCAGAAACTTCTATTCRAACAAACAAAGCATTCATTCATTCATTCAGAAAAATAATCATGTCAAGTTCTTATTCTACTCTTCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27057</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>121386</contig_pos>
        <strand>+</strand>
        <context>TTCATTCATT[A/C]ATTCAGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTCAGAACTCCAGAAACTTCTATTCGAACAAACAAAGCATTCATTCATT</left_flank>
        <right_flank>ATTCAGAAAAATAATCATGTCAAGTTCTTATTCTACTCTTCTGGCTTCTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGACTTGTGTTTATTGCTTATTGCTTATTATGGCCTTGTGTCGTAAAAGAGAGATAGGGACATAAAAGGCAACACATGTAATATTATATTTTCAAATCGAAGTTCGAGAACTTTCGGCAAGATGCTCTACTGATAGAAGTATTTAGAATGATCCCTATTTTTGGGTTTTCAGTTCTAATCCCCTCCATTGTCGTCTGAAAGATGACTAGATATTTCTATCCGGAATCCCTGAATATAGGGCTGAAAATTGTAAATTTGGGCTGAAGGATGAAAGTGCCGGTTGAAGGGAAAACGTCAAAAATAGTGAAAGGATATGAATAACAAAACTTTTCATAATTTGATTGAACCCCAGATTTCTGGCCTTCTGGCTTCGATGATTCCGAGCTTCAAGGCTTCATAGATTTCAGATTTACAGACTTTTGGGATTCAAAGTTCTTTTTATCTGCTGTTCAGAACTCCAGAAACTTCTATTCGAACAAACAAAGCATTCATTCATTCATTCAGAAAAATAATCATGTCAAGTTCTTATTCTACTCTTCTGGCTTCTTCGTGTCGCTCTTATCCGGTTTTTTCCGCTGAAAAATGCTCAGCATTGAGAATCCGGCTGACGATGGAGCGTCGACAGAAGATGACGATGACGCTTGTTTGTTCTTCTTTTTCTGCAAAATTCGACGTTTCAAAAATATTAAAAAATTGTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAGTTTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGTTATCCGAGTACGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCTTTCAAAACTTCTTCAAAAACTCACTTCCCATCTTCCGTACTATTCGAAATTGATTTCCTTTGTTCTAACGTCGTTTCCTGTCTTTCTAAAACACGAGTGGGCGGATTCTGGAGCACATTGTTGTTCAGAAAA</canonical>
            <polymorphic>CAAGACTTGTGTTTATTGCTTATTGCTTATTATGGCCTTGTGTCGTAAAAGAGAGATAGGGACATAAAAGGCAACACATGTAATATTATATTTTCAAATCGAAGTTCGAGAACTTTCGGCAAGATGCTCTACTGATAGAAGTATTTAGAATGATCCCTATTTTTGGGTTTTCAGTTCTAATCCCCTCCATTGTCGTCTGAAAGATGACTAGATATTTCTATCCGGAATCCCTGAATATAGGGCTGAAAATTGTAAATTTGGGCTGAAGGATGAAAGTGCCGGTTGAAGGGAAAACGTCAAAAATAGTGAAAGGATATGAATAACAAAACTTTTCATAATTTGATTGAACCCCAGATTTCTGGCCTTCTGGCTTCGATGATTCCGAGCTTCAAGGCTTCATAGATTTCAGATTTACAGACTTTTGGGATTCAAAGTTCTTTTTATCTGCTGTTCAGAACTCCAGAAACTTCTATTCGAACAAACAAAGCATTCATTCATTMATTCAGAAAAATAATCATGTCAAGTTCTTATTCTACTCTTCTGGCTTCTTCGTGTCGCTCTTATCCGGTTTTTTCCGCTGAAAAATGCTCAGCATTGAGAATCCGGCTGACGATGGAGCGTCGACAGAAGATGACGATGACGCTTGTTTGTTCTTCTTTTTCTGCAAAATTCGACGTTTCAAAAATATTAAAAAATTGTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAGTTTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGTTATCCGAGTACGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCTTTCAAAACTTCTTCAAAAACTCACTTCCCATCTTCCGTACTATTCGAAATTGATTTCCTTTGTTCTAACGTCGTTTCCTGTCTTTCTAAAACACGAGTGGGCGGATTCTGGAGCACATTGTTGTTCAGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATTTACAGACTTTTGGGATTC</pcr_primer_p1>
		<pcr_primer_p2>GAAGAACAAACAAGCGTCAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGATTTACAGACTTTTGGGATTCAAAGTTCTTTTTATCTGCTGTTCAGAACTCCAGAAACTTCTATTCGAACAAACAAAGCATTCATTCATTCATTCAGAAAAATAATCATGTCAAGTTCTTATTCTACTCTTCTGGCTTCTTCGTGTCGCTCTTATCCGGTTTTTTCCGCTGAAAAATGCTCAGCATTGAGAATCCGGCTGACGATGGAGCGTCGACAGAAGATGACGATGACGCTTGTTTGTTCTTC</canonical_amplicon>
		<polymorphic_amplicon>AGATTTACAGACTTTTGGGATTCAAAGTTCTTTTTATCTGCTGTTCAGAACTCCAGAAACTTCTATTCGAACAAACAAAGCATTCATTCATTMATTCAGAAAAATAATCATGTCAAGTTCTTATTCTACTCTTCTGGCTTCTTCGTGTCGCTCTTATCCGGTTTTTTCCGCTGAAAAATGCTCAGCATTGAGAATCCGGCTGACGATGGAGCGTCGACAGAAGATGACGATGACGCTTGTTTGTTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27058</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>121576</contig_pos>
        <strand>+</strand>
        <context>CAAAAATATT[A/C]AAAAATTGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACGCTTGTTTGTTCTTCTTTTTCTGCAAAATTCGACGTTTCAAAAATATT</left_flank>
        <right_flank>AAAAATTGTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTCGTCTGAAAGATGACTAGATATTTCTATCCGGAATCCCTGAATATAGGGCTGAAAATTGTAAATTTGGGCTGAAGGATGAAAGTGCCGGTTGAAGGGAAAACGTCAAAAATAGTGAAAGGATATGAATAACAAAACTTTTCATAATTTGATTGAACCCCAGATTTCTGGCCTTCTGGCTTCGATGATTCCGAGCTTCAAGGCTTCATAGATTTCAGATTTACAGACTTTTGGGATTCAAAGTTCTTTTTATCTGCTGTTCAGAACTCCAGAAACTTCTATTCGAACAAACAAAGCATTCATTCATTCATTCAGAAAAATAATCATGTCAAGTTCTTATTCTACTCTTCTGGCTTCTTCGTGTCGCTCTTATCCGGTTTTTTCCGCTGAAAAATGCTCAGCATTGAGAATCCGGCTGACGATGGAGCGTCGACAGAAGATGACGATGACGCTTGTTTGTTCTTCTTTTTCTGCAAAATTCGACGTTTCAAAAATATTAAAAAATTGTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAGTTTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGTTATCCGAGTACGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCTTTCAAAACTTCTTCAAAAACTCACTTCCCATCTTCCGTACTATTCGAAATTGATTTCCTTTGTTCTAACGTCGTTTCCTGTCTTTCTAAAACACGAGTGGGCGGATTCTGGAGCACATTGTTGTTCAGAAAAGCAGTTGGAGTGACTACTGGCTGAGACGGGTACGGTAGAATATTCCCAATTGGCGCTTGCTTCGATCCTTGAACATCTTCTTTCGGCGTTTTATTTCCTGGCAGTTCAAAGTAGCTGTTGGATGCCGGAGCCTGCTCGAATCCGTCGAGATTTGGAAGCTCCCTGACCACATCAGACATTGTGACACGTT</canonical>
            <polymorphic>TGTCGTCTGAAAGATGACTAGATATTTCTATCCGGAATCCCTGAATATAGGGCTGAAAATTGTAAATTTGGGCTGAAGGATGAAAGTGCCGGTTGAAGGGAAAACGTCAAAAATAGTGAAAGGATATGAATAACAAAACTTTTCATAATTTGATTGAACCCCAGATTTCTGGCCTTCTGGCTTCGATGATTCCGAGCTTCAAGGCTTCATAGATTTCAGATTTACAGACTTTTGGGATTCAAAGTTCTTTTTATCTGCTGTTCAGAACTCCAGAAACTTCTATTCGAACAAACAAAGCATTCATTCATTCATTCAGAAAAATAATCATGTCAAGTTCTTATTCTACTCTTCTGGCTTCTTCGTGTCGCTCTTATCCGGTTTTTTCCGCTGAAAAATGCTCAGCATTGAGAATCCGGCTGACGATGGAGCGTCGACAGAAGATGACGATGACGCTTGTTTGTTCTTCTTTTTCTGCAAAATTCGACGTTTCAAAAATATTMAAAAATTGTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAGTTTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGTTATCCGAGTACGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCTTTCAAAACTTCTTCAAAAACTCACTTCCCATCTTCCGTACTATTCGAAATTGATTTCCTTTGTTCTAACGTCGTTTCCTGTCTTTCTAAAACACGAGTGGGCGGATTCTGGAGCACATTGTTGTTCAGAAAAGCAGTTGGAGTGACTACTGGCTGAGACGGGTACGGTAGAATATTCCCAATTGGCGCTTGCTTCGATCCTTGAACATCTTCTTTCGGCGTTTTATTTCCTGGCAGTTCAAAGTAGCTGTTGGATGCCGGAGCCTGCTCGAATCCGTCGAGATTTGGAAGCTCCCTGACCACATCAGACATTGTGACACGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGCTTGTTTGTTCTTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTGAGTTTTTGAAGAAGTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ACGCTTGTTTGTTCTTCTTTTTCTGCAAAATTCGACGTTTCAAAAATATTAAAAAATTGTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAGTTTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGTTATCCGAGTACGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCTTTCAAAACTTCTTCAAAAACTCAC</canonical_amplicon>
		<polymorphic_amplicon>ACGCTTGTTTGTTCTTCTTTTTCTGCAAAATTCGACGTTTCAAAAATATTMAAAAATTGTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAGTTTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGTTATCCGAGTACGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCTTTCAAAACTTCTTCAAAAACTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27059</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>121641</contig_pos>
        <strand>+</strand>
        <context>ATGGATTGAG[A/T]TTTGGTTGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAG</left_flank>
        <right_flank>TTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGTTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGGGCTGAAGGATGAAAGTGCCGGTTGAAGGGAAAACGTCAAAAATAGTGAAAGGATATGAATAACAAAACTTTTCATAATTTGATTGAACCCCAGATTTCTGGCCTTCTGGCTTCGATGATTCCGAGCTTCAAGGCTTCATAGATTTCAGATTTACAGACTTTTGGGATTCAAAGTTCTTTTTATCTGCTGTTCAGAACTCCAGAAACTTCTATTCGAACAAACAAAGCATTCATTCATTCATTCAGAAAAATAATCATGTCAAGTTCTTATTCTACTCTTCTGGCTTCTTCGTGTCGCTCTTATCCGGTTTTTTCCGCTGAAAAATGCTCAGCATTGAGAATCCGGCTGACGATGGAGCGTCGACAGAAGATGACGATGACGCTTGTTTGTTCTTCTTTTTCTGCAAAATTCGACGTTTCAAAAATATTAAAAAATTGTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAGTTTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGTTATCCGAGTACGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCTTTCAAAACTTCTTCAAAAACTCACTTCCCATCTTCCGTACTATTCGAAATTGATTTCCTTTGTTCTAACGTCGTTTCCTGTCTTTCTAAAACACGAGTGGGCGGATTCTGGAGCACATTGTTGTTCAGAAAAGCAGTTGGAGTGACTACTGGCTGAGACGGGTACGGTAGAATATTCCCAATTGGCGCTTGCTTCGATCCTTGAACATCTTCTTTCGGCGTTTTATTTCCTGGCAGTTCAAAGTAGCTGTTGGATGCCGGAGCCTGCTCGAATCCGTCGAGATTTGGAAGCTCCCTGACCACATCAGACATTGTGACACGTTCTTGTTCGGTACCAGCACAAATCCGTTCCTAAAAAGAGAGAAAAATGTCTGGAATTGAAAAAAAA</canonical>
            <polymorphic>ATTTGGGCTGAAGGATGAAAGTGCCGGTTGAAGGGAAAACGTCAAAAATAGTGAAAGGATATGAATAACAAAACTTTTCATAATTTGATTGAACCCCAGATTTCTGGCCTTCTGGCTTCGATGATTCCGAGCTTCAAGGCTTCATAGATTTCAGATTTACAGACTTTTGGGATTCAAAGTTCTTTTTATCTGCTGTTCAGAACTCCAGAAACTTCTATTCGAACAAACAAAGCATTCATTCATTCATTCAGAAAAATAATCATGTCAAGTTCTTATTCTACTCTTCTGGCTTCTTCGTGTCGCTCTTATCCGGTTTTTTCCGCTGAAAAATGCTCAGCATTGAGAATCCGGCTGACGATGGAGCGTCGACAGAAGATGACGATGACGCTTGTTTGTTCTTCTTTTTCTGCAAAATTCGACGTTTCAAAAATATTAAAAAATTGTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAGWTTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGTTATCCGAGTACGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCTTTCAAAACTTCTTCAAAAACTCACTTCCCATCTTCCGTACTATTCGAAATTGATTTCCTTTGTTCTAACGTCGTTTCCTGTCTTTCTAAAACACGAGTGGGCGGATTCTGGAGCACATTGTTGTTCAGAAAAGCAGTTGGAGTGACTACTGGCTGAGACGGGTACGGTAGAATATTCCCAATTGGCGCTTGCTTCGATCCTTGAACATCTTCTTTCGGCGTTTTATTTCCTGGCAGTTCAAAGTAGCTGTTGGATGCCGGAGCCTGCTCGAATCCGTCGAGATTTGGAAGCTCCCTGACCACATCAGACATTGTGACACGTTCTTGTTCGGTACCAGCACAAATCCGTTCCTAAAAAGAGAGAAAAATGTCTGGAATTGAAAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTGTTTGTTCTTCTTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>GTGAGTTTTTGAAGAAGTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCTTGTTTGTTCTTCTTTTTCTGCAAAATTCGACGTTTCAAAAATATTAAAAAATTGTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAGTTTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGTTATCCGAGTACGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCTTTCAAAACTTCTTCAAAAACTCAC</canonical_amplicon>
		<polymorphic_amplicon>GCTTGTTTGTTCTTCTTTTTCTGCAAAATTCGACGTTTCAAAAATATTAAAAAATTGTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAGWTTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGTTATCCGAGTACGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCTTTCAAAACTTCTTCAAAAACTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27060</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>121665</contig_pos>
        <strand>+</strand>
        <context>GTTGGTTGAT[C/T]CGTACGGAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTTGTGGCCATCGACATGGATTGAGTTTTGGTTGTGCCGGTTGGTTGAT</left_flank>
        <right_flank>CGTACGGAAGTTTCCAAAGCTTGTTATCCGAGTACGAACTGGTTTTTTGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGTTGAAGGGAAAACGTCAAAAATAGTGAAAGGATATGAATAACAAAACTTTTCATAATTTGATTGAACCCCAGATTTCTGGCCTTCTGGCTTCGATGATTCCGAGCTTCAAGGCTTCATAGATTTCAGATTTACAGACTTTTGGGATTCAAAGTTCTTTTTATCTGCTGTTCAGAACTCCAGAAACTTCTATTCGAACAAACAAAGCATTCATTCATTCATTCAGAAAAATAATCATGTCAAGTTCTTATTCTACTCTTCTGGCTTCTTCGTGTCGCTCTTATCCGGTTTTTTCCGCTGAAAAATGCTCAGCATTGAGAATCCGGCTGACGATGGAGCGTCGACAGAAGATGACGATGACGCTTGTTTGTTCTTCTTTTTCTGCAAAATTCGACGTTTCAAAAATATTAAAAAATTGTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAGTTTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGTTATCCGAGTACGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCTTTCAAAACTTCTTCAAAAACTCACTTCCCATCTTCCGTACTATTCGAAATTGATTTCCTTTGTTCTAACGTCGTTTCCTGTCTTTCTAAAACACGAGTGGGCGGATTCTGGAGCACATTGTTGTTCAGAAAAGCAGTTGGAGTGACTACTGGCTGAGACGGGTACGGTAGAATATTCCCAATTGGCGCTTGCTTCGATCCTTGAACATCTTCTTTCGGCGTTTTATTTCCTGGCAGTTCAAAGTAGCTGTTGGATGCCGGAGCCTGCTCGAATCCGTCGAGATTTGGAAGCTCCCTGACCACATCAGACATTGTGACACGTTCTTGTTCGGTACCAGCACAAATCCGTTCCTAAAAAGAGAGAAAAATGTCTGGAATTGAAAAAAAAAATTACAGTGATATACTTGACAAC</canonical>
            <polymorphic>CGGTTGAAGGGAAAACGTCAAAAATAGTGAAAGGATATGAATAACAAAACTTTTCATAATTTGATTGAACCCCAGATTTCTGGCCTTCTGGCTTCGATGATTCCGAGCTTCAAGGCTTCATAGATTTCAGATTTACAGACTTTTGGGATTCAAAGTTCTTTTTATCTGCTGTTCAGAACTCCAGAAACTTCTATTCGAACAAACAAAGCATTCATTCATTCATTCAGAAAAATAATCATGTCAAGTTCTTATTCTACTCTTCTGGCTTCTTCGTGTCGCTCTTATCCGGTTTTTTCCGCTGAAAAATGCTCAGCATTGAGAATCCGGCTGACGATGGAGCGTCGACAGAAGATGACGATGACGCTTGTTTGTTCTTCTTTTTCTGCAAAATTCGACGTTTCAAAAATATTAAAAAATTGTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAGTTTTGGTTGTGCCGGTTGGTTGATYCGTACGGAAGTTTCCAAAGCTTGTTATCCGAGTACGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCTTTCAAAACTTCTTCAAAAACTCACTTCCCATCTTCCGTACTATTCGAAATTGATTTCCTTTGTTCTAACGTCGTTTCCTGTCTTTCTAAAACACGAGTGGGCGGATTCTGGAGCACATTGTTGTTCAGAAAAGCAGTTGGAGTGACTACTGGCTGAGACGGGTACGGTAGAATATTCCCAATTGGCGCTTGCTTCGATCCTTGAACATCTTCTTTCGGCGTTTTATTTCCTGGCAGTTCAAAGTAGCTGTTGGATGCCGGAGCCTGCTCGAATCCGTCGAGATTTGGAAGCTCCCTGACCACATCAGACATTGTGACACGTTCTTGTTCGGTACCAGCACAAATCCGTTCCTAAAAAGAGAGAAAAATGTCTGGAATTGAAAAAAAAAATTACAGTGATATACTTGACAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>496 288 216</canonical_bands>
                <polymorphic_bands>784 216</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTGTTTGTTCTTCTTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>GTGAGTTTTTGAAGAAGTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCTTGTTTGTTCTTCTTTTTCTGCAAAATTCGACGTTTCAAAAATATTAAAAAATTGTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAGTTTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGTTATCCGAGTACGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCTTTCAAAACTTCTTCAAAAACTCAC</canonical_amplicon>
		<polymorphic_amplicon>GCTTGTTTGTTCTTCTTTTTCTGCAAAATTCGACGTTTCAAAAATATTAAAAAATTGTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAGTTTTGGTTGTGCCGGTTGGTTGATYCGTACGGAAGTTTCCAAAGCTTGTTATCCGAGTACGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCTTTCAAAACTTCTTCAAAAACTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27061</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>121689</contig_pos>
        <strand>+</strand>
        <context>CCAAAGCTTG[A/T]YATCCGAGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTTTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTG</left_flank>
        <right_flank>TATCCGAGTACGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTGAAAGGATATGAATAACAAAACTTTTCATAATTTGATTGAACCCCAGATTTCTGGCCTTCTGGCTTCGATGATTCCGAGCTTCAAGGCTTCATAGATTTCAGATTTACAGACTTTTGGGATTCAAAGTTCTTTTTATCTGCTGTTCAGAACTCCAGAAACTTCTATTCGAACAAACAAAGCATTCATTCATTCATTCAGAAAAATAATCATGTCAAGTTCTTATTCTACTCTTCTGGCTTCTTCGTGTCGCTCTTATCCGGTTTTTTCCGCTGAAAAATGCTCAGCATTGAGAATCCGGCTGACGATGGAGCGTCGACAGAAGATGACGATGACGCTTGTTTGTTCTTCTTTTTCTGCAAAATTCGACGTTTCAAAAATATTAAAAAATTGTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAGTTTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGTTATCCGAGTACGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCTTTCAAAACTTCTTCAAAAACTCACTTCCCATCTTCCGTACTATTCGAAATTGATTTCCTTTGTTCTAACGTCGTTTCCTGTCTTTCTAAAACACGAGTGGGCGGATTCTGGAGCACATTGTTGTTCAGAAAAGCAGTTGGAGTGACTACTGGCTGAGACGGGTACGGTAGAATATTCCCAATTGGCGCTTGCTTCGATCCTTGAACATCTTCTTTCGGCGTTTTATTTCCTGGCAGTTCAAAGTAGCTGTTGGATGCCGGAGCCTGCTCGAATCCGTCGAGATTTGGAAGCTCCCTGACCACATCAGACATTGTGACACGTTCTTGTTCGGTACCAGCACAAATCCGTTCCTAAAAAGAGAGAAAAATGTCTGGAATTGAAAAAAAAAATTACAGTGATATACTTGACAACTGCAGTTGTCACTTTTGCATCGAA</canonical>
            <polymorphic>TAGTGAAAGGATATGAATAACAAAACTTTTCATAATTTGATTGAACCCCAGATTTCTGGCCTTCTGGCTTCGATGATTCCGAGCTTCAAGGCTTCATAGATTTCAGATTTACAGACTTTTGGGATTCAAAGTTCTTTTTATCTGCTGTTCAGAACTCCAGAAACTTCTATTCGAACAAACAAAGCATTCATTCATTCATTCAGAAAAATAATCATGTCAAGTTCTTATTCTACTCTTCTGGCTTCTTCGTGTCGCTCTTATCCGGTTTTTTCCGCTGAAAAATGCTCAGCATTGAGAATCCGGCTGACGATGGAGCGTCGACAGAAGATGACGATGACGCTTGTTTGTTCTTCTTTTTCTGCAAAATTCGACGTTTCAAAAATATTAAAAAATTGTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAGTTTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGWTATCCGAGTACGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCTTTCAAAACTTCTTCAAAAACTCACTTCCCATCTTCCGTACTATTCGAAATTGATTTCCTTTGTTCTAACGTCGTTTCCTGTCTTTCTAAAACACGAGTGGGCGGATTCTGGAGCACATTGTTGTTCAGAAAAGCAGTTGGAGTGACTACTGGCTGAGACGGGTACGGTAGAATATTCCCAATTGGCGCTTGCTTCGATCCTTGAACATCTTCTTTCGGCGTTTTATTTCCTGGCAGTTCAAAGTAGCTGTTGGATGCCGGAGCCTGCTCGAATCCGTCGAGATTTGGAAGCTCCCTGACCACATCAGACATTGTGACACGTTCTTGTTCGGTACCAGCACAAATCCGTTCCTAAAAAGAGAGAAAAATGTCTGGAATTGAAAAAAAAAATTACAGTGATATACTTGACAACTGCAGTTGTCACTTTTGCATCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTGTTTGTTCTTCTTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>GTGAGTTTTTGAAGAAGTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCTTGTTTGTTCTTCTTTTTCTGCAAAATTCGACGTTTCAAAAATATTAAAAAATTGTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAGTTTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGTTATCCGAGTACGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCTTTCAAAACTTCTTCAAAAACTCAC</canonical_amplicon>
		<polymorphic_amplicon>GCTTGTTTGTTCTTCTTTTTCTGCAAAATTCGACGTTTCAAAAATATTAAAAAATTGTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAGTTTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGWTATCCGAGTACGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCTTTCAAAACTTCTTCAAAAACTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27062</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>121690</contig_pos>
        <strand>+</strand>
        <context>CAAAGCTTGW[C/T]ATCCGAGTAY</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGT</left_flank>
        <right_flank>ATCCGAGTACGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGAAAGGATATGAATAACAAAACTTTTCATAATTTGATTGAACCCCAGATTTCTGGCCTTCTGGCTTCGATGATTCCGAGCTTCAAGGCTTCATAGATTTCAGATTTACAGACTTTTGGGATTCAAAGTTCTTTTTATCTGCTGTTCAGAACTCCAGAAACTTCTATTCGAACAAACAAAGCATTCATTCATTCATTCAGAAAAATAATCATGTCAAGTTCTTATTCTACTCTTCTGGCTTCTTCGTGTCGCTCTTATCCGGTTTTTTCCGCTGAAAAATGCTCAGCATTGAGAATCCGGCTGACGATGGAGCGTCGACAGAAGATGACGATGACGCTTGTTTGTTCTTCTTTTTCTGCAAAATTCGACGTTTCAAAAATATTAAAAAATTGTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAGTTTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGTTATCCGAGTACGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCTTTCAAAACTTCTTCAAAAACTCACTTCCCATCTTCCGTACTATTCGAAATTGATTTCCTTTGTTCTAACGTCGTTTCCTGTCTTTCTAAAACACGAGTGGGCGGATTCTGGAGCACATTGTTGTTCAGAAAAGCAGTTGGAGTGACTACTGGCTGAGACGGGTACGGTAGAATATTCCCAATTGGCGCTTGCTTCGATCCTTGAACATCTTCTTTCGGCGTTTTATTTCCTGGCAGTTCAAAGTAGCTGTTGGATGCCGGAGCCTGCTCGAATCCGTCGAGATTTGGAAGCTCCCTGACCACATCAGACATTGTGACACGTTCTTGTTCGGTACCAGCACAAATCCGTTCCTAAAAAGAGAGAAAAATGTCTGGAATTGAAAAAAAAAATTACAGTGATATACTTGACAACTGCAGTTGTCACTTTTGCATCGAAC</canonical>
            <polymorphic>AGTGAAAGGATATGAATAACAAAACTTTTCATAATTTGATTGAACCCCAGATTTCTGGCCTTCTGGCTTCGATGATTCCGAGCTTCAAGGCTTCATAGATTTCAGATTTACAGACTTTTGGGATTCAAAGTTCTTTTTATCTGCTGTTCAGAACTCCAGAAACTTCTATTCGAACAAACAAAGCATTCATTCATTCATTCAGAAAAATAATCATGTCAAGTTCTTATTCTACTCTTCTGGCTTCTTCGTGTCGCTCTTATCCGGTTTTTTCCGCTGAAAAATGCTCAGCATTGAGAATCCGGCTGACGATGGAGCGTCGACAGAAGATGACGATGACGCTTGTTTGTTCTTCTTTTTCTGCAAAATTCGACGTTTCAAAAATATTAAAAAATTGTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAGTTTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGTYATCCGAGTACGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCTTTCAAAACTTCTTCAAAAACTCACTTCCCATCTTCCGTACTATTCGAAATTGATTTCCTTTGTTCTAACGTCGTTTCCTGTCTTTCTAAAACACGAGTGGGCGGATTCTGGAGCACATTGTTGTTCAGAAAAGCAGTTGGAGTGACTACTGGCTGAGACGGGTACGGTAGAATATTCCCAATTGGCGCTTGCTTCGATCCTTGAACATCTTCTTTCGGCGTTTTATTTCCTGGCAGTTCAAAGTAGCTGTTGGATGCCGGAGCCTGCTCGAATCCGTCGAGATTTGGAAGCTCCCTGACCACATCAGACATTGTGACACGTTCTTGTTCGGTACCAGCACAAATCCGTTCCTAAAAAGAGAGAAAAATGTCTGGAATTGAAAAAAAAAATTACAGTGATATACTTGACAACTGCAGTTGTCACTTTTGCATCGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTGTTTGTTCTTCTTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>GTGAGTTTTTGAAGAAGTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCTTGTTTGTTCTTCTTTTTCTGCAAAATTCGACGTTTCAAAAATATTAAAAAATTGTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAGTTTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGTTATCCGAGTACGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCTTTCAAAACTTCTTCAAAAACTCAC</canonical_amplicon>
		<polymorphic_amplicon>GCTTGTTTGTTCTTCTTTTTCTGCAAAATTCGACGTTTCAAAAATATTAAAAAATTGTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAGTTTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGTYATCCGAGTACGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCTTTCAAAACTTCTTCAAAAACTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27063</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>121700</contig_pos>
        <strand>+</strand>
        <context>YATCCGAGTA[C/T]GAACTGGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGTTATCCGAGTA</left_flank>
        <right_flank>GAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGAATAACAAAACTTTTCATAATTTGATTGAACCCCAGATTTCTGGCCTTCTGGCTTCGATGATTCCGAGCTTCAAGGCTTCATAGATTTCAGATTTACAGACTTTTGGGATTCAAAGTTCTTTTTATCTGCTGTTCAGAACTCCAGAAACTTCTATTCGAACAAACAAAGCATTCATTCATTCATTCAGAAAAATAATCATGTCAAGTTCTTATTCTACTCTTCTGGCTTCTTCGTGTCGCTCTTATCCGGTTTTTTCCGCTGAAAAATGCTCAGCATTGAGAATCCGGCTGACGATGGAGCGTCGACAGAAGATGACGATGACGCTTGTTTGTTCTTCTTTTTCTGCAAAATTCGACGTTTCAAAAATATTAAAAAATTGTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAGTTTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGTTATCCGAGTACGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCTTTCAAAACTTCTTCAAAAACTCACTTCCCATCTTCCGTACTATTCGAAATTGATTTCCTTTGTTCTAACGTCGTTTCCTGTCTTTCTAAAACACGAGTGGGCGGATTCTGGAGCACATTGTTGTTCAGAAAAGCAGTTGGAGTGACTACTGGCTGAGACGGGTACGGTAGAATATTCCCAATTGGCGCTTGCTTCGATCCTTGAACATCTTCTTTCGGCGTTTTATTTCCTGGCAGTTCAAAGTAGCTGTTGGATGCCGGAGCCTGCTCGAATCCGTCGAGATTTGGAAGCTCCCTGACCACATCAGACATTGTGACACGTTCTTGTTCGGTACCAGCACAAATCCGTTCCTAAAAAGAGAGAAAAATGTCTGGAATTGAAAAAAAAAATTACAGTGATATACTTGACAACTGCAGTTGTCACTTTTGCATCGAACGGCATCCGAT</canonical>
            <polymorphic>TATGAATAACAAAACTTTTCATAATTTGATTGAACCCCAGATTTCTGGCCTTCTGGCTTCGATGATTCCGAGCTTCAAGGCTTCATAGATTTCAGATTTACAGACTTTTGGGATTCAAAGTTCTTTTTATCTGCTGTTCAGAACTCCAGAAACTTCTATTCGAACAAACAAAGCATTCATTCATTCATTCAGAAAAATAATCATGTCAAGTTCTTATTCTACTCTTCTGGCTTCTTCGTGTCGCTCTTATCCGGTTTTTTCCGCTGAAAAATGCTCAGCATTGAGAATCCGGCTGACGATGGAGCGTCGACAGAAGATGACGATGACGCTTGTTTGTTCTTCTTTTTCTGCAAAATTCGACGTTTCAAAAATATTAAAAAATTGTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAGTTTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGTTATCCGAGTAYGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCTTTCAAAACTTCTTCAAAAACTCACTTCCCATCTTCCGTACTATTCGAAATTGATTTCCTTTGTTCTAACGTCGTTTCCTGTCTTTCTAAAACACGAGTGGGCGGATTCTGGAGCACATTGTTGTTCAGAAAAGCAGTTGGAGTGACTACTGGCTGAGACGGGTACGGTAGAATATTCCCAATTGGCGCTTGCTTCGATCCTTGAACATCTTCTTTCGGCGTTTTATTTCCTGGCAGTTCAAAGTAGCTGTTGGATGCCGGAGCCTGCTCGAATCCGTCGAGATTTGGAAGCTCCCTGACCACATCAGACATTGTGACACGTTCTTGTTCGGTACCAGCACAAATCCGTTCCTAAAAAGAGAGAAAAATGTCTGGAATTGAAAAAAAAAATTACAGTGATATACTTGACAACTGCAGTTGTCACTTTTGCATCGAACGGCATCCGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>468 169 125 114 94 30</canonical_bands>
                <polymorphic_bands>468 169 125 124 114</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTGTTTGTTCTTCTTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>GTGAGTTTTTGAAGAAGTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCTTGTTTGTTCTTCTTTTTCTGCAAAATTCGACGTTTCAAAAATATTAAAAAATTGTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAGTTTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGTTATCCGAGTACGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCTTTCAAAACTTCTTCAAAAACTCAC</canonical_amplicon>
		<polymorphic_amplicon>GCTTGTTTGTTCTTCTTTTTCTGCAAAATTCGACGTTTCAAAAATATTAAAAAATTGTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAGTTTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGTTATCCGAGTAYGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCTTTCAAAACTTCTTCAAAAACTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27064</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>121755</contig_pos>
        <strand>+</strand>
        <context>AAGTATTTCT[C/T]TCAAAACTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCT</left_flank>
        <right_flank>TCAAAACTTCTTCAAAAACTCACTTCCCATCTTCCGTACTATTCGAAATT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTCGATGATTCCGAGCTTCAAGGCTTCATAGATTTCAGATTTACAGACTTTTGGGATTCAAAGTTCTTTTTATCTGCTGTTCAGAACTCCAGAAACTTCTATTCGAACAAACAAAGCATTCATTCATTCATTCAGAAAAATAATCATGTCAAGTTCTTATTCTACTCTTCTGGCTTCTTCGTGTCGCTCTTATCCGGTTTTTTCCGCTGAAAAATGCTCAGCATTGAGAATCCGGCTGACGATGGAGCGTCGACAGAAGATGACGATGACGCTTGTTTGTTCTTCTTTTTCTGCAAAATTCGACGTTTCAAAAATATTAAAAAATTGTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAGTTTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGTTATCCGAGTACGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCTTTCAAAACTTCTTCAAAAACTCACTTCCCATCTTCCGTACTATTCGAAATTGATTTCCTTTGTTCTAACGTCGTTTCCTGTCTTTCTAAAACACGAGTGGGCGGATTCTGGAGCACATTGTTGTTCAGAAAAGCAGTTGGAGTGACTACTGGCTGAGACGGGTACGGTAGAATATTCCCAATTGGCGCTTGCTTCGATCCTTGAACATCTTCTTTCGGCGTTTTATTTCCTGGCAGTTCAAAGTAGCTGTTGGATGCCGGAGCCTGCTCGAATCCGTCGAGATTTGGAAGCTCCCTGACCACATCAGACATTGTGACACGTTCTTGTTCGGTACCAGCACAAATCCGTTCCTAAAAAGAGAGAAAAATGTCTGGAATTGAAAAAAAAAATTACAGTGATATACTTGACAACTGCAGTTGTCACTTTTGCATCGAACGGCATCCGATATCCCTCCTGAACACGTGGCAATACCTCAGCCACCTTCATCCCGGGATACGGTTC</canonical>
            <polymorphic>GCTTCGATGATTCCGAGCTTCAAGGCTTCATAGATTTCAGATTTACAGACTTTTGGGATTCAAAGTTCTTTTTATCTGCTGTTCAGAACTCCAGAAACTTCTATTCGAACAAACAAAGCATTCATTCATTCATTCAGAAAAATAATCATGTCAAGTTCTTATTCTACTCTTCTGGCTTCTTCGTGTCGCTCTTATCCGGTTTTTTCCGCTGAAAAATGCTCAGCATTGAGAATCCGGCTGACGATGGAGCGTCGACAGAAGATGACGATGACGCTTGTTTGTTCTTCTTTTTCTGCAAAATTCGACGTTTCAAAAATATTAAAAAATTGTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAGTTTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGTTATCCGAGTACGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCTYTCAAAACTTCTTCAAAAACTCACTTCCCATCTTCCGTACTATTCGAAATTGATTTCCTTTGTTCTAACGTCGTTTCCTGTCTTTCTAAAACACGAGTGGGCGGATTCTGGAGCACATTGTTGTTCAGAAAAGCAGTTGGAGTGACTACTGGCTGAGACGGGTACGGTAGAATATTCCCAATTGGCGCTTGCTTCGATCCTTGAACATCTTCTTTCGGCGTTTTATTTCCTGGCAGTTCAAAGTAGCTGTTGGATGCCGGAGCCTGCTCGAATCCGTCGAGATTTGGAAGCTCCCTGACCACATCAGACATTGTGACACGTTCTTGTTCGGTACCAGCACAAATCCGTTCCTAAAAAGAGAGAAAAATGTCTGGAATTGAAAAAAAAAATTACAGTGATATACTTGACAACTGCAGTTGTCACTTTTGCATCGAACGGCATCCGATATCCCTCCTGAACACGTGGCAATACCTCAGCCACCTTCATCCCGGGATACGGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTTTTACTCACTTTTGCATTC</pcr_primer_p1>
		<pcr_primer_p2>ACGTTAGAACAAAGGAAATCAAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAGTTTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGTTATCCGAGTACGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCTTTCAAAACTTCTTCAAAAACTCACTTCCCATCTTCCGTACTATTCGAAATTGATTTCCTTTGTTCTAACGT</canonical_amplicon>
		<polymorphic_amplicon>GTGTTTTACTCACTTTTGCATTCGCCTGAGCCCTTGTGGCCATCGACATGGATTGAGTTTTGGTTGTGCCGGTTGGTTGATCCGTACGGAAGTTTCCAAAGCTTGTTATCCGAGTACGAACTGGTTTTTTGTTTTTCCGGCTGTAAATTCAAATTTTTCAAAAGTATTTCTYTCAAAACTTCTTCAAAAACTCACTTCCCATCTTCCGTACTATTCGAAATTGATTTCCTTTGTTCTAACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27065</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>123130</contig_pos>
        <strand>+</strand>
        <context>ATTTGGCGTC[C/T]ACAGCAAACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGATGGTGGTAGTTCAGAAGATCCGGAATCGATGCAAACCATTTGGCGTC</left_flank>
        <right_flank>ACAGCAAACTTGTTCTCATATTCTTGAATGACATAATGACGTATCTGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAGCGCTCCGTTATCAGCCAATTCCATAATCACCATCAACGGTTCTTGTCCAGCGGCAACTCCGTAAAAAGTGACGACGTTCGGATGTTTGAATTTTCTCATCAATCTCGCTTCATGCATGATTTCCTTGATTTGTTCCTTTGTTAGAGCCTCCAGTTTTGCCAGTTTTATTGCCGCTTTTTTGACAGTATTCCCGATACGAATCTCTCCTAACTGAACTTCTCCAAACGCGCCTTCTCCGAGTTTTCGAATCAATGTCACATCAGAATGCTGCTTTTCCCATGGTTCACGACCGATTGGACGGATCAACACAGATTCTGCACACTGGAAGAATCGGCACGTAATTCGGAGGGTACAACAATTCGGGGGTACAAAGAGGTACAAAATCTGTTCTCTAAGTATCCAGATGTTCAGAAACCTACCCCAATAGCCACTGGTTCTTTGGTCCGATGGTGGTAGTTCAGAAGATCCGGAATCGATGCAAACCATTTGGCGTCCACAGCAAACTTGTTCTCATATTCTTGAATGACATAATGACGTATCTGAAAAAATAAAACGAATGCTAGCCTCATTCTTCGAAGGATCATCTACCCACCTCATCAGCCACGCCCACATAAATCGAAAGAACGAATTTTCTAGGTTCCCCGACTTTCGGATCAGTGAATCTAACGAGAAAATCGCCACGCTGTGTCAGCAGCACTTTCATATCCTCGCGTGGTAACAATCCATGATACCAGGGTTCTTTAGCCAGTGTCTGCTCATGAGTACGTTTCTGACTCATTGCTCTGAATGGGAACGTTATGGGATACCGTGGAATAAAGAAGTAGTACTTACAATTCACCTGAAGCCTATTGCCAATATTCAGTGTTACTTTAGTCAGGAACCAAAATTTTGAAAACAAATTTTTTGGGATCTCTTTTTTTGGGGATCCGTTGGGAATCGTGTGGAAATCTCTTGCGGCGTTTTTTGGGAGCCACTAGCTGTTAGGTAGGTGAGAG</canonical>
            <polymorphic>TCAAGCGCTCCGTTATCAGCCAATTCCATAATCACCATCAACGGTTCTTGTCCAGCGGCAACTCCGTAAAAAGTGACGACGTTCGGATGTTTGAATTTTCTCATCAATCTCGCTTCATGCATGATTTCCTTGATTTGTTCCTTTGTTAGAGCCTCCAGTTTTGCCAGTTTTATTGCCGCTTTTTTGACAGTATTCCCGATACGAATCTCTCCTAACTGAACTTCTCCAAACGCGCCTTCTCCGAGTTTTCGAATCAATGTCACATCAGAATGCTGCTTTTCCCATGGTTCACGACCGATTGGACGGATCAACACAGATTCTGCACACTGGAAGAATCGGCACGTAATTCGGAGGGTACAACAATTCGGGGGTACAAAGAGGTACAAAATCTGTTCTCTAAGTATCCAGATGTTCAGAAACCTACCCCAATAGCCACTGGTTCTTTGGTCCGATGGTGGTAGTTCAGAAGATCCGGAATCGATGCAAACCATTTGGCGTCYACAGCAAACTTGTTCTCATATTCTTGAATGACATAATGACGTATCTGAAAAAATAAAACGAATGCTAGCCTCATTCTTCGAAGGATCATCTACCCACCTCATCAGCCACGCCCACATAAATCGAAAGAACGAATTTTCTAGGTTCCCCGACTTTCGGATCAGTGAATCTAACGAGAAAATCGCCACGCTGTGTCAGCAGCACTTTCATATCCTCGCGTGGTAACAATCCATGATACCAGGGTTCTTTAGCCAGTGTCTGCTCATGAGTACGTTTCTGACTCATTGCTCTGAATGGGAACGTTATGGGATACCGTGGAATAAAGAAGTAGTACTTACAATTCACCTGAAGCCTATTGCCAATATTCAGTGTTACTTTAGTCAGGAACCAAAATTTTGAAAACAAATTTTTTGGGATCTCTTTTTTTGGGGATCCGTTGGGAATCGTGTGGAAATCTCTTGCGGCGTTTTTTGGGAGCCACTAGCTGTTAGGTAGGTGAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>187 95 94 77 60 50 44 41 36 34 30 29 27 27 22 22 21 18 18 15 12 11 9 7 6 4 2 2</canonical_bands>
                <polymorphic_bands>187 139 94 77 60 50 41 36 34 30 29 27 27 22 22 21 18 18 15 12 11 9 7 6 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATCCAGATGTTCAGAAACCTA</pcr_primer_p1>
		<pcr_primer_p2>GGAACCTAGAAAATTCGTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTATCCAGATGTTCAGAAACCTACCCCAATAGCCACTGGTTCTTTGGTCCGATGGTGGTAGTTCAGAAGATCCGGAATCGATGCAAACCATTTGGCGTCCACAGCAAACTTGTTCTCATATTCTTGAATGACATAATGACGTATCTGAAAAAATAAAACGAATGCTAGCCTCATTCTTCGAAGGATCATCTACCCACCTCATCAGCCACGCCCACATAAATCGAAAGAACGAATTTTCTAGGTTCC</canonical_amplicon>
		<polymorphic_amplicon>GTATCCAGATGTTCAGAAACCTACCCCAATAGCCACTGGTTCTTTGGTCCGATGGTGGTAGTTCAGAAGATCCGGAATCGATGCAAACCATTTGGCGTCYACAGCAAACTTGTTCTCATATTCTTGAATGACATAATGACGTATCTGAAAAAATAAAACGAATGCTAGCCTCATTCTTCGAAGGATCATCTACCCACCTCATCAGCCACGCCCACATAAATCGAAAGAACGAATTTTCTAGGTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27066</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>123351</contig_pos>
        <strand>+</strand>
        <context>CCTCGCGTGG[C/T]AACAATCCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGAGAAAATCGCCACGCTGTGTCAGCAGCACTTTCATATCCTCGCGTGG</left_flank>
        <right_flank>AACAATCCATGATACCAGGGTTCTTTAGCCAGTGTCTGCTCATGAGTACG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTCCAAACGCGCCTTCTCCGAGTTTTCGAATCAATGTCACATCAGAATGCTGCTTTTCCCATGGTTCACGACCGATTGGACGGATCAACACAGATTCTGCACACTGGAAGAATCGGCACGTAATTCGGAGGGTACAACAATTCGGGGGTACAAAGAGGTACAAAATCTGTTCTCTAAGTATCCAGATGTTCAGAAACCTACCCCAATAGCCACTGGTTCTTTGGTCCGATGGTGGTAGTTCAGAAGATCCGGAATCGATGCAAACCATTTGGCGTCCACAGCAAACTTGTTCTCATATTCTTGAATGACATAATGACGTATCTGAAAAAATAAAACGAATGCTAGCCTCATTCTTCGAAGGATCATCTACCCACCTCATCAGCCACGCCCACATAAATCGAAAGAACGAATTTTCTAGGTTCCCCGACTTTCGGATCAGTGAATCTAACGAGAAAATCGCCACGCTGTGTCAGCAGCACTTTCATATCCTCGCGTGGTAACAATCCATGATACCAGGGTTCTTTAGCCAGTGTCTGCTCATGAGTACGTTTCTGACTCATTGCTCTGAATGGGAACGTTATGGGATACCGTGGAATAAAGAAGTAGTACTTACAATTCACCTGAAGCCTATTGCCAATATTCAGTGTTACTTTAGTCAGGAACCAAAATTTTGAAAACAAATTTTTTGGGATCTCTTTTTTTGGGGATCCGTTGGGAATCGTGTGGAAATCTCTTGCGGCGTTTTTTGGGAGCCACTAGCTGTTAGGTAGGTGAGAGGCTCACGCAAATTTAAGGAACTTTCTCAGCTTGAAGTCATAACGACTTGAAAGATTGTCAGCCCATACATTTACAAAACCACGATATTGAAACCCAAGAAAAACTAACAAAATATACAGTTGTTAAAAGTATTTATTAAACATCAAAAAACCAGAGAAACTTCGAAATGACATGGTTATGAGCAGATGGAGAGATCGGTGATTTGAGAAACAACTGGAAAA</canonical>
            <polymorphic>TTCTCCAAACGCGCCTTCTCCGAGTTTTCGAATCAATGTCACATCAGAATGCTGCTTTTCCCATGGTTCACGACCGATTGGACGGATCAACACAGATTCTGCACACTGGAAGAATCGGCACGTAATTCGGAGGGTACAACAATTCGGGGGTACAAAGAGGTACAAAATCTGTTCTCTAAGTATCCAGATGTTCAGAAACCTACCCCAATAGCCACTGGTTCTTTGGTCCGATGGTGGTAGTTCAGAAGATCCGGAATCGATGCAAACCATTTGGCGTCCACAGCAAACTTGTTCTCATATTCTTGAATGACATAATGACGTATCTGAAAAAATAAAACGAATGCTAGCCTCATTCTTCGAAGGATCATCTACCCACCTCATCAGCCACGCCCACATAAATCGAAAGAACGAATTTTCTAGGTTCCCCGACTTTCGGATCAGTGAATCTAACGAGAAAATCGCCACGCTGTGTCAGCAGCACTTTCATATCCTCGCGTGGYAACAATCCATGATACCAGGGTTCTTTAGCCAGTGTCTGCTCATGAGTACGTTTCTGACTCATTGCTCTGAATGGGAACGTTATGGGATACCGTGGAATAAAGAAGTAGTACTTACAATTCACCTGAAGCCTATTGCCAATATTCAGTGTTACTTTAGTCAGGAACCAAAATTTTGAAAACAAATTTTTTGGGATCTCTTTTTTTGGGGATCCGTTGGGAATCGTGTGGAAATCTCTTGCGGCGTTTTTTGGGAGCCACTAGCTGTTAGGTAGGTGAGAGGCTCACGCAAATTTAAGGAACTTTCTCAGCTTGAAGTCATAACGACTTGAAAGATTGTCAGCCCATACATTTACAAAACCACGATATTGAAACCCAAGAAAAACTAACAAAATATACAGTTGTTAAAAGTATTTATTAAACATCAAAAAACCAGAGAAACTTCGAAATGACATGGTTATGAGCAGATGGAGAGATCGGTGATTTGAGAAACAACTGGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>461 353 149 37</canonical_bands>
                <polymorphic_bands>610 353 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGACATAATGACGTATCTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAACGTACTCATGAGCAGAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGACATAATGACGTATCTGAAAAAATAAAACGAATGCTAGCCTCATTCTTCGAAGGATCATCTACCCACCTCATCAGCCACGCCCACATAAATCGAAAGAACGAATTTTCTAGGTTCCCCGACTTTCGGATCAGTGAATCTAACGAGAAAATCGCCACGCTGTGTCAGCAGCACTTTCATATCCTCGCGTGGTAACAATCCATGATACCAGGGTTCTTTAGCCAGTGTCTGCTCATGAGTACGTTTCT</canonical_amplicon>
		<polymorphic_amplicon>TGACATAATGACGTATCTGAAAAAATAAAACGAATGCTAGCCTCATTCTTCGAAGGATCATCTACCCACCTCATCAGCCACGCCCACATAAATCGAAAGAACGAATTTTCTAGGTTCCCCGACTTTCGGATCAGTGAATCTAACGAGAAAATCGCCACGCTGTGTCAGCAGCACTTTCATATCCTCGCGTGGYAACAATCCATGATACCAGGGTTCTTTAGCCAGTGTCTGCTCATGAGTACGTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27067</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>123449</contig_pos>
        <strand>+</strand>
        <context>TACCGTGGAA[C/T]AAAGAAGTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGTTTCTGACTCATTGCTCTGAATGGGAACGTTATGGGATACCGTGGAA</left_flank>
        <right_flank>AAAGAAGTAGTACTTACAATTCACCTGAAGCCTATTGCCAATATTCAGTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGCACACTGGAAGAATCGGCACGTAATTCGGAGGGTACAACAATTCGGGGGTACAAAGAGGTACAAAATCTGTTCTCTAAGTATCCAGATGTTCAGAAACCTACCCCAATAGCCACTGGTTCTTTGGTCCGATGGTGGTAGTTCAGAAGATCCGGAATCGATGCAAACCATTTGGCGTCCACAGCAAACTTGTTCTCATATTCTTGAATGACATAATGACGTATCTGAAAAAATAAAACGAATGCTAGCCTCATTCTTCGAAGGATCATCTACCCACCTCATCAGCCACGCCCACATAAATCGAAAGAACGAATTTTCTAGGTTCCCCGACTTTCGGATCAGTGAATCTAACGAGAAAATCGCCACGCTGTGTCAGCAGCACTTTCATATCCTCGCGTGGTAACAATCCATGATACCAGGGTTCTTTAGCCAGTGTCTGCTCATGAGTACGTTTCTGACTCATTGCTCTGAATGGGAACGTTATGGGATACCGTGGAATAAAGAAGTAGTACTTACAATTCACCTGAAGCCTATTGCCAATATTCAGTGTTACTTTAGTCAGGAACCAAAATTTTGAAAACAAATTTTTTGGGATCTCTTTTTTTGGGGATCCGTTGGGAATCGTGTGGAAATCTCTTGCGGCGTTTTTTGGGAGCCACTAGCTGTTAGGTAGGTGAGAGGCTCACGCAAATTTAAGGAACTTTCTCAGCTTGAAGTCATAACGACTTGAAAGATTGTCAGCCCATACATTTACAAAACCACGATATTGAAACCCAAGAAAAACTAACAAAATATACAGTTGTTAAAAGTATTTATTAAACATCAAAAAACCAGAGAAACTTCGAAATGACATGGTTATGAGCAGATGGAGAGATCGGTGATTTGAGAAACAACTGGAAAAAGAAGAGGGGCACCGAAACAAACCGGTGGGAGTAAAGAAGAAGAAGAAGGAATTAGATCTCTTCTGACGGTGAAGGAAGGCTTGGTGGAGTCAGAGCG</canonical>
            <polymorphic>CTGCACACTGGAAGAATCGGCACGTAATTCGGAGGGTACAACAATTCGGGGGTACAAAGAGGTACAAAATCTGTTCTCTAAGTATCCAGATGTTCAGAAACCTACCCCAATAGCCACTGGTTCTTTGGTCCGATGGTGGTAGTTCAGAAGATCCGGAATCGATGCAAACCATTTGGCGTCCACAGCAAACTTGTTCTCATATTCTTGAATGACATAATGACGTATCTGAAAAAATAAAACGAATGCTAGCCTCATTCTTCGAAGGATCATCTACCCACCTCATCAGCCACGCCCACATAAATCGAAAGAACGAATTTTCTAGGTTCCCCGACTTTCGGATCAGTGAATCTAACGAGAAAATCGCCACGCTGTGTCAGCAGCACTTTCATATCCTCGCGTGGTAACAATCCATGATACCAGGGTTCTTTAGCCAGTGTCTGCTCATGAGTACGTTTCTGACTCATTGCTCTGAATGGGAACGTTATGGGATACCGTGGAAYAAAGAAGTAGTACTTACAATTCACCTGAAGCCTATTGCCAATATTCAGTGTTACTTTAGTCAGGAACCAAAATTTTGAAAACAAATTTTTTGGGATCTCTTTTTTTGGGGATCCGTTGGGAATCGTGTGGAAATCTCTTGCGGCGTTTTTTGGGAGCCACTAGCTGTTAGGTAGGTGAGAGGCTCACGCAAATTTAAGGAACTTTCTCAGCTTGAAGTCATAACGACTTGAAAGATTGTCAGCCCATACATTTACAAAACCACGATATTGAAACCCAAGAAAAACTAACAAAATATACAGTTGTTAAAAGTATTTATTAAACATCAAAAAACCAGAGAAACTTCGAAATGACATGGTTATGAGCAGATGGAGAGATCGGTGATTTGAGAAACAACTGGAAAAAGAAGAGGGGCACCGAAACAAACCGGTGGGAGTAAAGAAGAAGAAGAAGGAATTAGATCTCTTCTGACGGTGAAGGAAGGCTTGGTGGAGTCAGAGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTGCTCATGAGTACGTTTCT</pcr_primer_p1>
		<pcr_primer_p2>CCTCTCACCTACCTAACAGCTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTCTGCTCATGAGTACGTTTCTGACTCATTGCTCTGAATGGGAACGTTATGGGATACCGTGGAATAAAGAAGTAGTACTTACAATTCACCTGAAGCCTATTGCCAATATTCAGTGTTACTTTAGTCAGGAACCAAAATTTTGAAAACAAATTTTTTGGGATCTCTTTTTTTGGGGATCCGTTGGGAATCGTGTGGAAATCTCTTGCGGCGTTTTTTGGGAGCCACTAGCTGTTAGGTAGGTGAGAGG</canonical_amplicon>
		<polymorphic_amplicon>GTCTGCTCATGAGTACGTTTCTGACTCATTGCTCTGAATGGGAACGTTATGGGATACCGTGGAAYAAAGAAGTAGTACTTACAATTCACCTGAAGCCTATTGCCAATATTCAGTGTTACTTTAGTCAGGAACCAAAATTTTGAAAACAAATTTTTTGGGATCTCTTTTTTTGGGGATCCGTTGGGAATCGTGTGGAAATCTCTTGCGGCGTTTTTTGGGAGCCACTAGCTGTTAGGTAGGTGAGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27068</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>123503</contig_pos>
        <strand>+</strand>
        <context>TTCAGTGTTA[C/T]TTTAGTCAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAGTAGTACTTACAATTCACCTGAAGCCTATTGCCAATATTCAGTGTTA</left_flank>
        <right_flank>TTTAGTCAGGAACCAAAATTTTGAAAACAAATTTTTTGGGATCTCTTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAGAGGTACAAAATCTGTTCTCTAAGTATCCAGATGTTCAGAAACCTACCCCAATAGCCACTGGTTCTTTGGTCCGATGGTGGTAGTTCAGAAGATCCGGAATCGATGCAAACCATTTGGCGTCCACAGCAAACTTGTTCTCATATTCTTGAATGACATAATGACGTATCTGAAAAAATAAAACGAATGCTAGCCTCATTCTTCGAAGGATCATCTACCCACCTCATCAGCCACGCCCACATAAATCGAAAGAACGAATTTTCTAGGTTCCCCGACTTTCGGATCAGTGAATCTAACGAGAAAATCGCCACGCTGTGTCAGCAGCACTTTCATATCCTCGCGTGGTAACAATCCATGATACCAGGGTTCTTTAGCCAGTGTCTGCTCATGAGTACGTTTCTGACTCATTGCTCTGAATGGGAACGTTATGGGATACCGTGGAATAAAGAAGTAGTACTTACAATTCACCTGAAGCCTATTGCCAATATTCAGTGTTACTTTAGTCAGGAACCAAAATTTTGAAAACAAATTTTTTGGGATCTCTTTTTTTGGGGATCCGTTGGGAATCGTGTGGAAATCTCTTGCGGCGTTTTTTGGGAGCCACTAGCTGTTAGGTAGGTGAGAGGCTCACGCAAATTTAAGGAACTTTCTCAGCTTGAAGTCATAACGACTTGAAAGATTGTCAGCCCATACATTTACAAAACCACGATATTGAAACCCAAGAAAAACTAACAAAATATACAGTTGTTAAAAGTATTTATTAAACATCAAAAAACCAGAGAAACTTCGAAATGACATGGTTATGAGCAGATGGAGAGATCGGTGATTTGAGAAACAACTGGAAAAAGAAGAGGGGCACCGAAACAAACCGGTGGGAGTAAAGAAGAAGAAGAAGGAATTAGATCTCTTCTGACGGTGAAGGAAGGCTTGGTGGAGTCAGAGCGACAGAGGGGAATGGGAGAGCGGATGGATTGGTGGGCACACAGAATGGAAGAGTT</canonical>
            <polymorphic>CAAAGAGGTACAAAATCTGTTCTCTAAGTATCCAGATGTTCAGAAACCTACCCCAATAGCCACTGGTTCTTTGGTCCGATGGTGGTAGTTCAGAAGATCCGGAATCGATGCAAACCATTTGGCGTCCACAGCAAACTTGTTCTCATATTCTTGAATGACATAATGACGTATCTGAAAAAATAAAACGAATGCTAGCCTCATTCTTCGAAGGATCATCTACCCACCTCATCAGCCACGCCCACATAAATCGAAAGAACGAATTTTCTAGGTTCCCCGACTTTCGGATCAGTGAATCTAACGAGAAAATCGCCACGCTGTGTCAGCAGCACTTTCATATCCTCGCGTGGTAACAATCCATGATACCAGGGTTCTTTAGCCAGTGTCTGCTCATGAGTACGTTTCTGACTCATTGCTCTGAATGGGAACGTTATGGGATACCGTGGAATAAAGAAGTAGTACTTACAATTCACCTGAAGCCTATTGCCAATATTCAGTGTTAYTTTAGTCAGGAACCAAAATTTTGAAAACAAATTTTTTGGGATCTCTTTTTTTGGGGATCCGTTGGGAATCGTGTGGAAATCTCTTGCGGCGTTTTTTGGGAGCCACTAGCTGTTAGGTAGGTGAGAGGCTCACGCAAATTTAAGGAACTTTCTCAGCTTGAAGTCATAACGACTTGAAAGATTGTCAGCCCATACATTTACAAAACCACGATATTGAAACCCAAGAAAAACTAACAAAATATACAGTTGTTAAAAGTATTTATTAAACATCAAAAAACCAGAGAAACTTCGAAATGACATGGTTATGAGCAGATGGAGAGATCGGTGATTTGAGAAACAACTGGAAAAAGAAGAGGGGCACCGAAACAAACCGGTGGGAGTAAAGAAGAAGAAGAAGGAATTAGATCTCTTCTGACGGTGAAGGAAGGCTTGGTGGAGTCAGAGCGACAGAGGGGAATGGGAGAGCGGATGGATTGGTGGGCACACAGAATGGAAGAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 346 149</canonical_bands>
                <polymorphic_bands>654 346</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTGCTCATGAGTACGTTTCT</pcr_primer_p1>
		<pcr_primer_p2>CCTCTCACCTACCTAACAGCTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTCTGCTCATGAGTACGTTTCTGACTCATTGCTCTGAATGGGAACGTTATGGGATACCGTGGAATAAAGAAGTAGTACTTACAATTCACCTGAAGCCTATTGCCAATATTCAGTGTTACTTTAGTCAGGAACCAAAATTTTGAAAACAAATTTTTTGGGATCTCTTTTTTTGGGGATCCGTTGGGAATCGTGTGGAAATCTCTTGCGGCGTTTTTTGGGAGCCACTAGCTGTTAGGTAGGTGAGAGG</canonical_amplicon>
		<polymorphic_amplicon>GTCTGCTCATGAGTACGTTTCTGACTCATTGCTCTGAATGGGAACGTTATGGGATACCGTGGAATAAAGAAGTAGTACTTACAATTCACCTGAAGCCTATTGCCAATATTCAGTGTTAYTTTAGTCAGGAACCAAAATTTTGAAAACAAATTTTTTGGGATCTCTTTTTTTGGGGATCCGTTGGGAATCGTGTGGAAATCTCTTGCGGCGTTTTTTGGGAGCCACTAGCTGTTAGGTAGGTGAGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27069</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>162195</contig_pos>
        <strand>+</strand>
        <context>CGGCAGTCAT[A/G]AGACCATCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAACCGTCAGGGCATCAGCAGTCTTTCTAAATGGAAAGACGGCAGTCAT</left_flank>
        <right_flank>AGACCATCATCTTCGGCTTTCACACTATGATCAAAAACTTCTCCGAATTT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAAGACAAGAAAGAGATAAGAACAAAGATGATAAATTGAAAGTACAGTAGAAATAGGGCAATAACAATTATTGTTTGAGGTAATCTTGAAGTTTTGCGGAGTACTTACCAGATATTAAAAACCAATTTTTTAAAACCAACGAGTCAGATCACCAAGAGACTAAATTGAGATCGATTAAACTGAAACTATTCTAGTCATTTAGAAGATCATCGTCCTCGTCCGACTGAAAAATAAACAATTGTTAAGAAGTTATAGAAAGACTCATTATTACCTCAAGACTGCTCGGGATGGCTGCGAGCAACTGGTCAGCCGACATGTTTGTATCTGTTGAAGGGATTTCCTCGATCTTCTCGGTCTTTAACTCCATATCCAGCGATACTCCATTGAGCACTTTTCCTTCTTCCATCACCTAAATATATCAATTATTTCGATAATTGACAAAATTGCTAACCGTCAGGGCATCAGCAGTCTTTCTAAATGGAAAGACGGCAGTCATAAGACCATCATCTTCGGCTTTCACACTATGATCAAAAACTTCTCCGAATTTTTCCATATGAGCCATTAAGTCGGTAACCAATTCTTCCTACAAAAATTTATTTGATATTTCCTGATTCTTGCCGATCTAACTATACCTTTACGTGTTTGACGACGACGATGCTATTCAACTTGTTCTGCGGTTCCTCCCCATCGCTTGCTGCTTTTCTTTTCCTGCTCGGGTCTTCAAACTTGTTCGGACTTTTCAAAGATTCGATTTGGGCAACTATTTCATCCACGAGCATTGACTTTTCAGAAATTTTCAAAAGAATCGAATCTATTTCTTCTTTGCACGCTTTGACTTTCTTATGCAGATGCTTGACCAACTTAGTAGCGTTTTTTCTTTCAGCCTCATCAGGAGACGTTCTTGCTTTGATAAGTAGCTCTTTCTGTCTGGCCAACCATTTATCAAGAATCACGTTGTGTTGATTCTGAGCTTCTACAAGTGCCGATAACAAGCTCT</canonical>
            <polymorphic>TGAAAAGACAAGAAAGAGATAAGAACAAAGATGATAAATTGAAAGTACAGTAGAAATAGGGCAATAACAATTATTGTTTGAGGTAATCTTGAAGTTTTGCGGAGTACTTACCAGATATTAAAAACCAATTTTTTAAAACCAACGAGTCAGATCACCAAGAGACTAAATTGAGATCGATTAAACTGAAACTATTCTAGTCATTTAGAAGATCATCGTCCTCGTCCGACTGAAAAATAAACAATTGTTAAGAAGTTATAGAAAGACTCATTATTACCTCAAGACTGCTCGGGATGGCTGCGAGCAACTGGTCAGCCGACATGTTTGTATCTGTTGAAGGGATTTCCTCGATCTTCTCGGTCTTTAACTCCATATCCAGCGATACTCCATTGAGCACTTTTCCTTCTTCCATCACCTAAATATATCAATTATTTCGATAATTGACAAAATTGCTAACCGTCAGGGCATCAGCAGTCTTTCTAAATGGAAAGACGGCAGTCATRAGACCATCATCTTCGGCTTTCACACTATGATCAAAAACTTCTCCGAATTTTTCCATATGAGCCATTAAGTCGGTAACCAATTCTTCCTACAAAAATTTATTTGATATTTCCTGATTCTTGCCGATCTAACTATACCTTTACGTGTTTGACGACGACGATGCTATTCAACTTGTTCTGCGGTTCCTCCCCATCGCTTGCTGCTTTTCTTTTCCTGCTCGGGTCTTCAAACTTGTTCGGACTTTTCAAAGATTCGATTTGGGCAACTATTTCATCCACGAGCATTGACTTTTCAGAAATTTTCAAAAGAATCGAATCTATTTCTTCTTTGCACGCTTTGACTTTCTTATGCAGATGCTTGACCAACTTAGTAGCGTTTTTTCTTTCAGCCTCATCAGGAGACGTTCTTGCTTTGATAAGTAGCTCTTTCTGTCTGGCCAACCATTTATCAAGAATCACGTTGTGTTGATTCTGAGCTTCTACAAGTGCCGATAACAAGCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTCCATCACCTAAATATATCA</pcr_primer_p1>
		<pcr_primer_p2>CGTCAAACACGTAAAGGTATAGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCTTCCATCACCTAAATATATCAATTATTTCGATAATTGACAAAATTGCTAACCGTCAGGGCATCAGCAGTCTTTCTAAATGGAAAGACGGCAGTCATAAGACCATCATCTTCGGCTTTCACACTATGATCAAAAACTTCTCCGAATTTTTCCATATGAGCCATTAAGTCGGTAACCAATTCTTCCTACAAAAATTTATTTGATATTTCCTGATTCTTGCCGATCTAACTATACCTTTACGTGTTTGACG</canonical_amplicon>
		<polymorphic_amplicon>TTCTTCCATCACCTAAATATATCAATTATTTCGATAATTGACAAAATTGCTAACCGTCAGGGCATCAGCAGTCTTTCTAAATGGAAAGACGGCAGTCATRAGACCATCATCTTCGGCTTTCACACTATGATCAAAAACTTCTCCGAATTTTTCCATATGAGCCATTAAGTCGGTAACCAATTCTTCCTACAAAAATTTATTTGATATTTCCTGATTCTTGCCGATCTAACTATACCTTTACGTGTTTGACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27070</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>162434</contig_pos>
        <strand>+</strand>
        <context>CTTGTTCGGA[C/T]TTTTCAAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATCGCTTGCTGCTTTTCTTTTCCTGCTCGGGTCTTCAAACTTGTTCGGA</left_flank>
        <right_flank>TTTTCAAAGATTCGATTTGGGCAACTATTTCATCCACGAGCATTGACTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGTTAAGAAGTTATAGAAAGACTCATTATTACCTCAAGACTGCTCGGGATGGCTGCGAGCAACTGGTCAGCCGACATGTTTGTATCTGTTGAAGGGATTTCCTCGATCTTCTCGGTCTTTAACTCCATATCCAGCGATACTCCATTGAGCACTTTTCCTTCTTCCATCACCTAAATATATCAATTATTTCGATAATTGACAAAATTGCTAACCGTCAGGGCATCAGCAGTCTTTCTAAATGGAAAGACGGCAGTCATAAGACCATCATCTTCGGCTTTCACACTATGATCAAAAACTTCTCCGAATTTTTCCATATGAGCCATTAAGTCGGTAACCAATTCTTCCTACAAAAATTTATTTGATATTTCCTGATTCTTGCCGATCTAACTATACCTTTACGTGTTTGACGACGACGATGCTATTCAACTTGTTCTGCGGTTCCTCCCCATCGCTTGCTGCTTTTCTTTTCCTGCTCGGGTCTTCAAACTTGTTCGGACTTTTCAAAGATTCGATTTGGGCAACTATTTCATCCACGAGCATTGACTTTTCAGAAATTTTCAAAAGAATCGAATCTATTTCTTCTTTGCACGCTTTGACTTTCTTATGCAGATGCTTGACCAACTTAGTAGCGTTTTTTCTTTCAGCCTCATCAGGAGACGTTCTTGCTTTGATAAGTAGCTCTTTCTGTCTGGCCAACCATTTATCAAGAATCACGTTGTGTTGATTCTGAGCTTCTACAAGTGCCGATAACAAGCTCTTCTCGTTTGTCAATTTCTCCTTAGCCTCTTGAAGCTGTTTCCTGTGATTGAGAGCTGCTACGTTGACAAATTTCGATTCTTGCACGGTTGCAATTTTAGGCCGTTCCGTTGGTTTCGGTGGTGATGTTGGAGCATTCGATTTGGCTGCTGCAGCGTCGATTCCTTCACCTCCTGGGTTGTGCCAAAACACTTTAATGAACCGGTTGTTGAGAACGGGAGCTGGTGACTTGTATGCCTTG</canonical>
            <polymorphic>AATTGTTAAGAAGTTATAGAAAGACTCATTATTACCTCAAGACTGCTCGGGATGGCTGCGAGCAACTGGTCAGCCGACATGTTTGTATCTGTTGAAGGGATTTCCTCGATCTTCTCGGTCTTTAACTCCATATCCAGCGATACTCCATTGAGCACTTTTCCTTCTTCCATCACCTAAATATATCAATTATTTCGATAATTGACAAAATTGCTAACCGTCAGGGCATCAGCAGTCTTTCTAAATGGAAAGACGGCAGTCATAAGACCATCATCTTCGGCTTTCACACTATGATCAAAAACTTCTCCGAATTTTTCCATATGAGCCATTAAGTCGGTAACCAATTCTTCCTACAAAAATTTATTTGATATTTCCTGATTCTTGCCGATCTAACTATACCTTTACGTGTTTGACGACGACGATGCTATTCAACTTGTTCTGCGGTTCCTCCCCATCGCTTGCTGCTTTTCTTTTCCTGCTCGGGTCTTCAAACTTGTTCGGAYTTTTCAAAGATTCGATTTGGGCAACTATTTCATCCACGAGCATTGACTTTTCAGAAATTTTCAAAAGAATCGAATCTATTTCTTCTTTGCACGCTTTGACTTTCTTATGCAGATGCTTGACCAACTTAGTAGCGTTTTTTCTTTCAGCCTCATCAGGAGACGTTCTTGCTTTGATAAGTAGCTCTTTCTGTCTGGCCAACCATTTATCAAGAATCACGTTGTGTTGATTCTGAGCTTCTACAAGTGCCGATAACAAGCTCTTCTCGTTTGTCAATTTCTCCTTAGCCTCTTGAAGCTGTTTCCTGTGATTGAGAGCTGCTACGTTGACAAATTTCGATTCTTGCACGGTTGCAATTTTAGGCCGTTCCGTTGGTTTCGGTGGTGATGTTGGAGCATTCGATTTGGCTGCTGCAGCGTCGATTCCTTCACCTCCTGGGTTGTGCCAAAACACTTTAATGAACCGGTTGTTGAGAACGGGAGCTGGTGACTTGTATGCCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTAAGTCGGTAACCAATTCTTC</pcr_primer_p1>
		<pcr_primer_p2>TCGATTCTTTTGAAAATTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTAAGTCGGTAACCAATTCTTCCTACAAAAATTTATTTGATATTTCCTGATTCTTGCCGATCTAACTATACCTTTACGTGTTTGACGACGACGATGCTATTCAACTTGTTCTGCGGTTCCTCCCCATCGCTTGCTGCTTTTCTTTTCCTGCTCGGGTCTTCAAACTTGTTCGGACTTTTCAAAGATTCGATTTGGGCAACTATTTCATCCACGAGCATTGACTTTTCAGAAATTTTCAAAAGAATCGA</canonical_amplicon>
		<polymorphic_amplicon>ATTAAGTCGGTAACCAATTCTTCCTACAAAAATTTATTTGATATTTCCTGATTCTTGCCGATCTAACTATACCTTTACGTGTTTGACGACGACGATGCTATTCAACTTGTTCTGCGGTTCCTCCCCATCGCTTGCTGCTTTTCTTTTCCTGCTCGGGTCTTCAAACTTGTTCGGAYTTTTCAAAGATTCGATTTGGGCAACTATTTCATCCACGAGCATTGACTTTTCAGAAATTTTCAAAAGAATCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27071</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>215355</contig_pos>
        <strand>+</strand>
        <context>TTTTCTAGAT[A/T]TCAATTTCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTACCACCAAATAAAAATTTAAAAACTTCAAAAGTATGTTTTTCTAGAT</left_flank>
        <right_flank>TCAATTTCACAATTGTTCGGACTCCCCAGGTTCTGATCGGAAGTTGTCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTTTCATTCAAAGAAGACGTGGATTCAAGACTTGCCCATCTCTGGAATCTGGAATTTCAACAATCTCTCCAATGACCGATTCAACCATCATTTCCATTGAGAATAAGAAGACGGAATTCTTTGATTTCTTTGCTCTGATGCCACCTGCCATCGATTACGAAGAATTCGATTTGGATGTCTCAGTTGATAGCAGAACACTTCCACGTCTCGGATCCCTTGTCTACGAATACTACCCAAGCAATCTTGATGTCAGTGTTTCGGACCCAGTCTTTGTTTAATTTTCTTCACTCAATCATTTTCATTCTCAATTTTTCTATCTATTTTTGTGCTCAATATTATTTCCTGTGTCAATCCTGTATGTTGTGATCTCTGTGATTCTTTGATTCTCCTGTTTATTTTCAACCCTGTCAGTTGTTATTATTATTCTATCCTTTCTCAGTATTTAAGTTTACCACCAAATAAAAATTTAAAAACTTCAAAAGTATGTTTTTCTAGATTTCAATTTCACAATTGTTCGGACTCCCCAGGTTCTGATCGGAAGTTGTCCGAAAACGGATTTATAGCGGGCCACGGTCAGATTTAGGTCGGAATTCGAAAGTTGAAATACTATTAGGTCTGAACCCCCAAAATGGTTTTCAGCCGATTTTTCGAACAAGTTTTTTTTCAACCTTCGATTCAAGTGTCTTCCATCATCAAGTATGTCTTCCAAATAAGTCGTTTATCAGAACAAAAAAACCACACTGGAAACCAGTGAAAATGCGAATGGGAATGACAACAAAATAAGTGAAAATCATTGACAAAGAGAAGCAAAAAAGACACAAAATAAAAAAACAAAAAAGAGAAACAACATTGTATATCCCTGGGAGCAGCCGATAAGCAACGAAACAAGAATTCAGATGACCCGTTTTTCGAAAGAAGAATATTTTAGACACGAGTCGCATCGCCGAAAAATACGTCTTTTTCGTCGTTGATGATTCTTGGAGAACGGCTTATGGATC</canonical>
            <polymorphic>TCGTTTCATTCAAAGAAGACGTGGATTCAAGACTTGCCCATCTCTGGAATCTGGAATTTCAACAATCTCTCCAATGACCGATTCAACCATCATTTCCATTGAGAATAAGAAGACGGAATTCTTTGATTTCTTTGCTCTGATGCCACCTGCCATCGATTACGAAGAATTCGATTTGGATGTCTCAGTTGATAGCAGAACACTTCCACGTCTCGGATCCCTTGTCTACGAATACTACCCAAGCAATCTTGATGTCAGTGTTTCGGACCCAGTCTTTGTTTAATTTTCTTCACTCAATCATTTTCATTCTCAATTTTTCTATCTATTTTTGTGCTCAATATTATTTCCTGTGTCAATCCTGTATGTTGTGATCTCTGTGATTCTTTGATTCTCCTGTTTATTTTCAACCCTGTCAGTTGTTATTATTATTCTATCCTTTCTCAGTATTTAAGTTTACCACCAAATAAAAATTTAAAAACTTCAAAAGTATGTTTTTCTAGATWTCAATTTCACAATTGTTCGGACTCCCCAGGTTCTGATCGGAAGTTGTCCGAAAACGGATTTATAGCGGGCCACGGTCAGATTTAGGTCGGAATTCGAAAGTTGAAATACTATTAGGTCTGAACCCCCAAAATGGTTTTCAGCCGATTTTTCGAACAAGTTTTTTTTCAACCTTCGATTCAAGTGTCTTCCATCATCAAGTATGTCTTCCAAATAAGTCGTTTATCAGAACAAAAAAACCACACTGGAAACCAGTGAAAATGCGAATGGGAATGACAACAAAATAAGTGAAAATCATTGACAAAGAGAAGCAAAAAAGACACAAAATAAAAAAACAAAAAAGAGAAACAACATTGTATATCCCTGGGAGCAGCCGATAAGCAACGAAACAAGAATTCAGATGACCCGTTTTTCGAAAGAAGAATATTTTAGACACGAGTCGCATCGCCGAAAAATACGTCTTTTTCGTCGTTGATGATTCTTGGAGAACGGCTTATGGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGTATTTAAGTTTACCACCAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAGACACTTGAATCGAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCAGTATTTAAGTTTACCACCAAATAAAAATTTAAAAACTTCAAAAGTATGTTTTTCTAGATTTCAATTTCACAATTGTTCGGACTCCCCAGGTTCTGATCGGAAGTTGTCCGAAAACGGATTTATAGCGGGCCACGGTCAGATTTAGGTCGGAATTCGAAAGTTGAAATACTATTAGGTCTGAACCCCCAAAATGGTTTTCAGCCGATTTTTCGAACAAGTTTTTTTTCAACCTTCGATTCAAGTGTCTT</canonical_amplicon>
		<polymorphic_amplicon>TCAGTATTTAAGTTTACCACCAAATAAAAATTTAAAAACTTCAAAAGTATGTTTTTCTAGATWTCAATTTCACAATTGTTCGGACTCCCCAGGTTCTGATCGGAAGTTGTCCGAAAACGGATTTATAGCGGGCCACGGTCAGATTTAGGTCGGAATTCGAAAGTTGAAATACTATTAGGTCTGAACCCCCAAAATGGTTTTCAGCCGATTTTTCGAACAAGTTTTTTTTCAACCTTCGATTCAAGTGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27072</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>219818</contig_pos>
        <strand>+</strand>
        <context>TTTTTGGTGG[A/G]AATTAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTGCTGCCCAATTTTCACTAAAAACTTCCGAATCAGATTTTTTGGTGG</left_flank>
        <right_flank>AATTAAAAATTTTAAAGTTTGTTCAGCTAGTAGAATTTTCCGGATACCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACATAATAAGTTTGTTCCGTTTTCAAATTACAAAAATTACCAAAAAGATTTTATTGGTTTCAGTACAGGTTTGTAAATTTTAAGATCATCAAAAGCTAGTTCAAAAATTTCTGGTTGATCTAAATTTTCGGCCAATTTCGAAGAAACATAACTCAATAACCAAAAAAGCTAGACAACTATTGCAAACAGAGAAAGTGTGAAAAATTGAATCTCCTACATTTCAATATTGACTTTTCTAGCTACCGTAGTTTTTGAGATATGCGCCTTTAAAGTTGGCGCCTTCTCCAGACGCAGAGCAAAAAATGCGGCAATTTTAAAGGCGCAAACTCAAAAACTACGGTAGTTTCGAAGAAGGGGTCAACTACAAAATTGATGCTCTATTTTTGTTTTATATACTCTTAAGATTTCAGATCAATCATAAAATTAGGAAACTATTTTGCAGGGATCCATTGCTGCCCAATTTTCACTAAAAACTTCCGAATCAGATTTTTTGGTGGAAATTAAAAATTTTAAAGTTTGTTCAGCTAGTAGAATTTTCCGGATACCTTCAATTCCAGTCGTACACTGTGATCTCCTCTGACAATGACATGGCGTTCCAACTGCCAATTCTTGTAATTGAATGTTCAATTGCATCGCTGCAAAAATTGCTCATTCTTAAACTTTCATCTAAAACACACTCAAGTGCCACATGTTCTTTTAATGTGTTTTTTCCTATTCTTCTTCTTCTTCTTCTTCTTTTTATTACTATGCTGCTGTGTTTTTTTCTCGAATAAGTCTTTGTTCTTTTAGAAGAAGAAGATAATAATGAAAAGAAAAAGAAATATGAGGACAACAAGAAGTTTTTTATGAACTAACCTTGTGTATTATTGAGCATGTGATCTGGGTCACACACATACAATTGCTGCTTGTTTCGTGGCAAAACTGCCACGCATTGATTGACTGTAGGACCACGAAGATCCGGAAATTGAGAAGACGTCCATTGCGAGGAAAAGATTACT</canonical>
            <polymorphic>AGACATAATAAGTTTGTTCCGTTTTCAAATTACAAAAATTACCAAAAAGATTTTATTGGTTTCAGTACAGGTTTGTAAATTTTAAGATCATCAAAAGCTAGTTCAAAAATTTCTGGTTGATCTAAATTTTCGGCCAATTTCGAAGAAACATAACTCAATAACCAAAAAAGCTAGACAACTATTGCAAACAGAGAAAGTGTGAAAAATTGAATCTCCTACATTTCAATATTGACTTTTCTAGCTACCGTAGTTTTTGAGATATGCGCCTTTAAAGTTGGCGCCTTCTCCAGACGCAGAGCAAAAAATGCGGCAATTTTAAAGGCGCAAACTCAAAAACTACGGTAGTTTCGAAGAAGGGGTCAACTACAAAATTGATGCTCTATTTTTGTTTTATATACTCTTAAGATTTCAGATCAATCATAAAATTAGGAAACTATTTTGCAGGGATCCATTGCTGCCCAATTTTCACTAAAAACTTCCGAATCAGATTTTTTGGTGGRAATTAAAAATTTTAAAGTTTGTTCAGCTAGTAGAATTTTCCGGATACCTTCAATTCCAGTCGTACACTGTGATCTCCTCTGACAATGACATGGCGTTCCAACTGCCAATTCTTGTAATTGAATGTTCAATTGCATCGCTGCAAAAATTGCTCATTCTTAAACTTTCATCTAAAACACACTCAAGTGCCACATGTTCTTTTAATGTGTTTTTTCCTATTCTTCTTCTTCTTCTTCTTCTTTTTATTACTATGCTGCTGTGTTTTTTTCTCGAATAAGTCTTTGTTCTTTTAGAAGAAGAAGATAATAATGAAAAGAAAAAGAAATATGAGGACAACAAGAAGTTTTTTATGAACTAACCTTGTGTATTATTGAGCATGTGATCTGGGTCACACACATACAATTGCTGCTTGTTTCGTGGCAAAACTGCCACGCATTGATTGACTGTAGGACCACGAAGATCCGGAAATTGAGAAGACGTCCATTGCGAGGAAAAGATTACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTCTGGTTGATCTAAATTTTC</pcr_primer_p1>
		<pcr_primer_p2>TACGACTGGAATTGAAGGTATC</pcr_primer_p2>
		<pcr_amplicon_size>457</pcr_amplicon_size>
		<canonical_amplicon>AATTTCTGGTTGATCTAAATTTTCGGCCAATTTCGAAGAAACATAACTCAATAACCAAAAAAGCTAGACAACTATTGCAAACAGAGAAAGTGTGAAAAATTGAATCTCCTACATTTCAATATTGACTTTTCTAGCTACCGTAGTTTTTGAGATATGCGCCTTTAAAGTTGGCGCCTTCTCCAGACGCAGAGCAAAAAATGCGGCAATTTTAAAGGCGCAAACTCAAAAACTACGGTAGTTTCGAAGAAGGGGTCAACTACAAAATTGATGCTCTATTTTTGTTTTATATACTCTTAAGATTTCAGATCAATCATAAAATTAGGAAACTATTTTGCAGGGATCCATTGCTGCCCAATTTTCACTAAAAACTTCCGAATCAGATTTTTTGGTGGAAATTAAAAATTTTAAAGTTTGTTCAGCTAGTAGAATTTTCCGGATACCTTCAATTCCAGTCGTA</canonical_amplicon>
		<polymorphic_amplicon>AATTTCTGGTTGATCTAAATTTTCGGCCAATTTCGAAGAAACATAACTCAATAACCAAAAAAGCTAGACAACTATTGCAAACAGAGAAAGTGTGAAAAATTGAATCTCCTACATTTCAATATTGACTTTTCTAGCTACCGTAGTTTTTGAGATATGCGCCTTTAAAGTTGGCGCCTTCTCCAGACGCAGAGCAAAAAATGCGGCAATTTTAAAGGCGCAAACTCAAAAACTACGGTAGTTTCGAAGAAGGGGTCAACTACAAAATTGATGCTCTATTTTTGTTTTATATACTCTTAAGATTTCAGATCAATCATAAAATTAGGAAACTATTTTGCAGGGATCCATTGCTGCCCAATTTTCACTAAAAACTTCCGAATCAGATTTTTTGGTGGRAATTAAAAATTTTAAAGTTTGTTCAGCTAGTAGAATTTTCCGGATACCTTCAATTCCAGTCGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27073</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>219848</contig_pos>
        <strand>+</strand>
        <context>TGTTCAGCTA[A/G]TAGAATTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAATCAGATTTTTTGGTGGAAATTAAAAATTTTAAAGTTTGTTCAGCTA</left_flank>
        <right_flank>TAGAATTTTCCGGATACCTTCAATTCCAGTCGTACACTGTGATCTCCTCT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACAAAAATTACCAAAAAGATTTTATTGGTTTCAGTACAGGTTTGTAAATTTTAAGATCATCAAAAGCTAGTTCAAAAATTTCTGGTTGATCTAAATTTTCGGCCAATTTCGAAGAAACATAACTCAATAACCAAAAAAGCTAGACAACTATTGCAAACAGAGAAAGTGTGAAAAATTGAATCTCCTACATTTCAATATTGACTTTTCTAGCTACCGTAGTTTTTGAGATATGCGCCTTTAAAGTTGGCGCCTTCTCCAGACGCAGAGCAAAAAATGCGGCAATTTTAAAGGCGCAAACTCAAAAACTACGGTAGTTTCGAAGAAGGGGTCAACTACAAAATTGATGCTCTATTTTTGTTTTATATACTCTTAAGATTTCAGATCAATCATAAAATTAGGAAACTATTTTGCAGGGATCCATTGCTGCCCAATTTTCACTAAAAACTTCCGAATCAGATTTTTTGGTGGAAATTAAAAATTTTAAAGTTTGTTCAGCTAGTAGAATTTTCCGGATACCTTCAATTCCAGTCGTACACTGTGATCTCCTCTGACAATGACATGGCGTTCCAACTGCCAATTCTTGTAATTGAATGTTCAATTGCATCGCTGCAAAAATTGCTCATTCTTAAACTTTCATCTAAAACACACTCAAGTGCCACATGTTCTTTTAATGTGTTTTTTCCTATTCTTCTTCTTCTTCTTCTTCTTTTTATTACTATGCTGCTGTGTTTTTTTCTCGAATAAGTCTTTGTTCTTTTAGAAGAAGAAGATAATAATGAAAAGAAAAAGAAATATGAGGACAACAAGAAGTTTTTTATGAACTAACCTTGTGTATTATTGAGCATGTGATCTGGGTCACACACATACAATTGCTGCTTGTTTCGTGGCAAAACTGCCACGCATTGATTGACTGTAGGACCACGAAGATCCGGAAATTGAGAAGACGTCCATTGCGAGGAAAAGATTACTGTAACTTGGTAGACGAGAAGAAGGATGAGC</canonical>
            <polymorphic>TACAAAAATTACCAAAAAGATTTTATTGGTTTCAGTACAGGTTTGTAAATTTTAAGATCATCAAAAGCTAGTTCAAAAATTTCTGGTTGATCTAAATTTTCGGCCAATTTCGAAGAAACATAACTCAATAACCAAAAAAGCTAGACAACTATTGCAAACAGAGAAAGTGTGAAAAATTGAATCTCCTACATTTCAATATTGACTTTTCTAGCTACCGTAGTTTTTGAGATATGCGCCTTTAAAGTTGGCGCCTTCTCCAGACGCAGAGCAAAAAATGCGGCAATTTTAAAGGCGCAAACTCAAAAACTACGGTAGTTTCGAAGAAGGGGTCAACTACAAAATTGATGCTCTATTTTTGTTTTATATACTCTTAAGATTTCAGATCAATCATAAAATTAGGAAACTATTTTGCAGGGATCCATTGCTGCCCAATTTTCACTAAAAACTTCCGAATCAGATTTTTTGGTGGAAATTAAAAATTTTAAAGTTTGTTCAGCTARTAGAATTTTCCGGATACCTTCAATTCCAGTCGTACACTGTGATCTCCTCTGACAATGACATGGCGTTCCAACTGCCAATTCTTGTAATTGAATGTTCAATTGCATCGCTGCAAAAATTGCTCATTCTTAAACTTTCATCTAAAACACACTCAAGTGCCACATGTTCTTTTAATGTGTTTTTTCCTATTCTTCTTCTTCTTCTTCTTCTTTTTATTACTATGCTGCTGTGTTTTTTTCTCGAATAAGTCTTTGTTCTTTTAGAAGAAGAAGATAATAATGAAAAGAAAAAGAAATATGAGGACAACAAGAAGTTTTTTATGAACTAACCTTGTGTATTATTGAGCATGTGATCTGGGTCACACACATACAATTGCTGCTTGTTTCGTGGCAAAACTGCCACGCATTGATTGACTGTAGGACCACGAAGATCCGGAAATTGAGAAGACGTCCATTGCGAGGAAAAGATTACTGTAACTTGGTAGACGAGAAGAAGGATGAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 289 73 68 67</canonical_bands>
                <polymorphic_bands>792 73 68 67</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCACTAAAAACTTCCGAATC</pcr_primer_p1>
		<pcr_primer_p2>GCACTTGAGTGTGTTTTAGATG</pcr_primer_p2>
		<pcr_amplicon_size>224</pcr_amplicon_size>
		<canonical_amplicon>TTTCACTAAAAACTTCCGAATCAGATTTTTTGGTGGAAATTAAAAATTTTAAAGTTTGTTCAGCTAGTAGAATTTTCCGGATACCTTCAATTCCAGTCGTACACTGTGATCTCCTCTGACAATGACATGGCGTTCCAACTGCCAATTCTTGTAATTGAATGTTCAATTGCATCGCTGCAAAAATTGCTCATTCTTAAACTTTCATCTAAAACACACTCAAGTGC</canonical_amplicon>
		<polymorphic_amplicon>TTTCACTAAAAACTTCCGAATCAGATTTTTTGGTGGAAATTAAAAATTTTAAAGTTTGTTCAGCTARTAGAATTTTCCGGATACCTTCAATTCCAGTCGTACACTGTGATCTCCTCTGACAATGACATGGCGTTCCAACTGCCAATTCTTGTAATTGAATGTTCAATTGCATCGCTGCAAAAATTGCTCATTCTTAAACTTTCATCTAAAACACACTCAAGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27074</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>220164</contig_pos>
        <strand>+</strand>
        <context>AAGAAGTTTT[G/T]TATGAACTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGAAGATAATAATGAAAAGAAAAAGAAATATGAGGACAACAAGAAGTTTT</left_flank>
        <right_flank>TATGAACTAACCTTGTGTATTATTGAGCATGTGATCTGGGTCACACACAT</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGAAGAAGGGGTCAACTACAAAATTGATGCTCTATTTTTGTTTTATATACTCTTAAGATTTCAGATCAATCATAAAATTAGGAAACTATTTTGCAGGGATCCATTGCTGCCCAATTTTCACTAAAAACTTCCGAATCAGATTTTTTGGTGGAAATTAAAAATTTTAAAGTTTGTTCAGCTAGTAGAATTTTCCGGATACCTTCAATTCCAGTCGTACACTGTGATCTCCTCTGACAATGACATGGCGTTCCAACTGCCAATTCTTGTAATTGAATGTTCAATTGCATCGCTGCAAAAATTGCTCATTCTTAAACTTTCATCTAAAACACACTCAAGTGCCACATGTTCTTTTAATGTGTTTTTTCCTATTCTTCTTCTTCTTCTTCTTCTTTTTATTACTATGCTGCTGTGTTTTTTTCTCGAATAAGTCTTTGTTCTTTTAGAAGAAGAAGATAATAATGAAAAGAAAAAGAAATATGAGGACAACAAGAAGTTTTTTATGAACTAACCTTGTGTATTATTGAGCATGTGATCTGGGTCACACACATACAATTGCTGCTTGTTTCGTGGCAAAACTGCCACGCATTGATTGACTGTAGGACCACGAAGATCCGGAAATTGAGAAGACGTCCATTGCGAGGAAAAGATTACTGTAACTTGGTAGACGAGAAGAAGGATGAGCGTGGCTAGCATCCCTAGAAATTATTTTTTTTTTGAAATTTTAATTAGCTGGAAAATTGAAGAGAAAAAAAGAAGTACATAATTATTATGTAGTCTAGAAGTTTGAAAAATAATTGAAATAGCGAAGGAGGAGTTGAAAGTTTGAAAGTTCTGAGCTAGCCAAAGATTACAAGAATGACGAGTTAGAGATTCTGCAATTCTGAAAAATTCAAAATTATAGATTTCAGGTTTTTGAGGTTCCAAAAACTATGGTTTCATAATTTTTCCCAAAAAATCCAAGAGAACAACCGAATATTGAAACCAGTTCAAAACCAAAT</canonical>
            <polymorphic>TTCGAAGAAGGGGTCAACTACAAAATTGATGCTCTATTTTTGTTTTATATACTCTTAAGATTTCAGATCAATCATAAAATTAGGAAACTATTTTGCAGGGATCCATTGCTGCCCAATTTTCACTAAAAACTTCCGAATCAGATTTTTTGGTGGAAATTAAAAATTTTAAAGTTTGTTCAGCTAGTAGAATTTTCCGGATACCTTCAATTCCAGTCGTACACTGTGATCTCCTCTGACAATGACATGGCGTTCCAACTGCCAATTCTTGTAATTGAATGTTCAATTGCATCGCTGCAAAAATTGCTCATTCTTAAACTTTCATCTAAAACACACTCAAGTGCCACATGTTCTTTTAATGTGTTTTTTCCTATTCTTCTTCTTCTTCTTCTTCTTTTTATTACTATGCTGCTGTGTTTTTTTCTCGAATAAGTCTTTGTTCTTTTAGAAGAAGAAGATAATAATGAAAAGAAAAAGAAATATGAGGACAACAAGAAGTTTTKTATGAACTAACCTTGTGTATTATTGAGCATGTGATCTGGGTCACACACATACAATTGCTGCTTGTTTCGTGGCAAAACTGCCACGCATTGATTGACTGTAGGACCACGAAGATCCGGAAATTGAGAAGACGTCCATTGCGAGGAAAAGATTACTGTAACTTGGTAGACGAGAAGAAGGATGAGCGTGGCTAGCATCCCTAGAAATTATTTTTTTTTTGAAATTTTAATTAGCTGGAAAATTGAAGAGAAAAAAAGAAGTACATAATTATTATGTAGTCTAGAAGTTTGAAAAATAATTGAAATAGCGAAGGAGGAGTTGAAAGTTTGAAAGTTCTGAGCTAGCCAAAGATTACAAGAATGACGAGTTAGAGATTCTGCAATTCTGAAAAATTCAAAATTATAGATTTCAGGTTTTTGAGGTTCCAAAAACTATGGTTTCATAATTTTTCCCAAAAAATCCAAGAGAACAACCGAATATTGAAACCAGTTCAAAACCAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCGAATAAGTCTTTGTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTCTCGTCTACCAAGTTACAGT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TCTCGAATAAGTCTTTGTTCTTTTAGAAGAAGAAGATAATAATGAAAAGAAAAAGAAATATGAGGACAACAAGAAGTTTTTTATGAACTAACCTTGTGTATTATTGAGCATGTGATCTGGGTCACACACATACAATTGCTGCTTGTTTCGTGGCAAAACTGCCACGCATTGATTGACTGTAGGACCACGAAGATCCGGAAATTGAGAAGACGTCCATTGCGAGGAAAAGATTACTGTAACTTGGTAGACGAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TCTCGAATAAGTCTTTGTTCTTTTAGAAGAAGAAGATAATAATGAAAAGAAAAAGAAATATGAGGACAACAAGAAGTTTTKTATGAACTAACCTTGTGTATTATTGAGCATGTGATCTGGGTCACACACATACAATTGCTGCTTGTTTCGTGGCAAAACTGCCACGCATTGATTGACTGTAGGACCACGAAGATCCGGAAATTGAGAAGACGTCCATTGCGAGGAAAAGATTACTGTAACTTGGTAGACGAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27075</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227598</contig_pos>
        <strand>+</strand>
        <context>AATACAGCAA[C/G]RCWRTCGCYA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAA</left_flank>
        <right_flank>ACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTTTTGGAACATGATTATGGTTCTCTTTCTGACAATGTGGAAAAGTTTTATGGATCACTGAGCAAGATTGCAGTACGAGTGAAAGATAGAATTGGGCTAATTAGAGCCATCAAGAAGCTTCTGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACC</canonical>
            <polymorphic>AACTTTTGGAACATGATTATGGTTCTCTTTCTGACAATGTGGAAAAGTTTTATGGATCACTGAGCAAGATTGCAGTACGAGTGAAAGATAGAATTGGGCTAATTAGAGCCATCAAGAAGCTTCTGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAASACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATAGAGAACAAGTCCTGACTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTATTGCTTCTTTGATTTCATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAA</canonical_amplicon>
		<polymorphic_amplicon>GATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAASACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27076</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227599</contig_pos>
        <strand>+</strand>
        <context>ATACAGCAAS[A/G]CWRTCGCYAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAA</left_flank>
        <right_flank>CCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTTGGAACATGATTATGGTTCTCTTTCTGACAATGTGGAAAAGTTTTATGGATCACTGAGCAAGATTGCAGTACGAGTGAAAGATAGAATTGGGCTAATTAGAGCCATCAAGAAGCTTCTGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCG</canonical>
            <polymorphic>ACTTTTGGAACATGATTATGGTTCTCTTTCTGACAATGTGGAAAAGTTTTATGGATCACTGAGCAAGATTGCAGTACGAGTGAAAGATAGAATTGGGCTAATTAGAGCCATCAAGAAGCTTCTGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAARCCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATAGAGAACAAGTCCTGACTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTATTGCTTCTTTGATTTCATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAA</canonical_amplicon>
		<polymorphic_amplicon>GATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAARCCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27077</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227601</contig_pos>
        <strand>+</strand>
        <context>ACAGCAASRC[A/T]RTCGCYAAAR</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAAC</left_flank>
        <right_flank>TTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGGAACATGATTATGGTTCTCTTTCTGACAATGTGGAAAAGTTTTATGGATCACTGAGCAAGATTGCAGTACGAGTGAAAGATAGAATTGGGCTAATTAGAGCCATCAAGAAGCTTCTGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGA</canonical>
            <polymorphic>TTTTGGAACATGATTATGGTTCTCTTTCTGACAATGTGGAAAAGTTTTATGGATCACTGAGCAAGATTGCAGTACGAGTGAAAGATAGAATTGGGCTAATTAGAGCCATCAAGAAGCTTCTGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACWTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATAGAGAACAAGTCCTGACTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTATTGCTTCTTTGATTTCATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAA</canonical_amplicon>
		<polymorphic_amplicon>GATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACWTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27078</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227602</contig_pos>
        <strand>+</strand>
        <context>CAGCAASRCW[A/G]TCGCYAAART</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACC</left_flank>
        <right_flank>TCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGAACATGATTATGGTTCTCTTTCTGACAATGTGGAAAAGTTTTATGGATCACTGAGCAAGATTGCAGTACGAGTGAAAGATAGAATTGGGCTAATTAGAGCCATCAAGAAGCTTCTGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGAT</canonical>
            <polymorphic>TTTGGAACATGATTATGGTTCTCTTTCTGACAATGTGGAAAAGTTTTATGGATCACTGAGCAAGATTGCAGTACGAGTGAAAGATAGAATTGGGCTAATTAGAGCCATCAAGAAGCTTCTGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCRTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATAGAGAACAAGTCCTGACTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTATTGCTTCTTTGATTTCATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAA</canonical_amplicon>
		<polymorphic_amplicon>GATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCRTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27079</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227607</contig_pos>
        <strand>+</strand>
        <context>ASRCWRTCGC[C/T]AAARTCGAMC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGC</left_flank>
        <right_flank>AAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACATGATTATGGTTCTCTTTCTGACAATGTGGAAAAGTTTTATGGATCACTGAGCAAGATTGCAGTACGAGTGAAAGATAGAATTGGGCTAATTAGAGCCATCAAGAAGCTTCTGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGC</canonical>
            <polymorphic>AACATGATTATGGTTCTCTTTCTGACAATGTGGAAAAGTTTTATGGATCACTGAGCAAGATTGCAGTACGAGTGAAAGATAGAATTGGGCTAATTAGAGCCATCAAGAAGCTTCTGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCYAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>372 361 137 130</canonical_bands>
                <polymorphic_bands>509 361 130</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGCGA</site>
                <isoschizomers>
                    <enzyme>Bsp68I</enzyme>
                    <enzyme>NruI</enzyme>
                </isoschizomers>
                <canonical_bands>498 372 130</canonical_bands>
                <polymorphic_bands>870 130</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>250 218 122 104 89 84 50 42 31 10</canonical_bands>
                <polymorphic_bands>300 218 122 104 89 84 42 31 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATAGAGAACAAGTCCTGACTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTATTGCTTCTTTGATTTCATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAA</canonical_amplicon>
		<polymorphic_amplicon>GATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCYAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27080</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227611</contig_pos>
        <strand>+</strand>
        <context>WRTCGCYAAA[A/G]TCGAMCYATT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAA</left_flank>
        <right_flank>TCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATTATGGTTCTCTTTCTGACAATGTGGAAAAGTTTTATGGATCACTGAGCAAGATTGCAGTACGAGTGAAAGATAGAATTGGGCTAATTAGAGCCATCAAGAAGCTTCTGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATG</canonical>
            <polymorphic>TGATTATGGTTCTCTTTCTGACAATGTGGAAAAGTTTTATGGATCACTGAGCAAGATTGCAGTACGAGTGAAAGATAGAATTGGGCTAATTAGAGCCATCAAGAAGCTTCTGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAARTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATAGAGAACAAGTCCTGACTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTATTGCTTCTTTGATTTCATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAA</canonical_amplicon>
		<polymorphic_amplicon>GATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAARTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27081</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227616</contig_pos>
        <strand>+</strand>
        <context>CYAAARTCGA[A/C]CYATTCSGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGA</left_flank>
        <right_flank>CCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGTTCTCTTTCTGACAATGTGGAAAAGTTTTATGGATCACTGAGCAAGATTGCAGTACGAGTGAAAGATAGAATTGGGCTAATTAGAGCCATCAAGAAGCTTCTGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAA</canonical>
            <polymorphic>ATGGTTCTCTTTCTGACAATGTGGAAAAGTTTTATGGATCACTGAGCAAGATTGCAGTACGAGTGAAAGATAGAATTGGGCTAATTAGAGCCATCAAGAAGCTTCTGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAMCCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATAGAGAACAAGTCCTGACTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTATTGCTTCTTTGATTTCATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAA</canonical_amplicon>
		<polymorphic_amplicon>GATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAMCCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27082</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227618</contig_pos>
        <strand>+</strand>
        <context>AAARTCGAMC[C/T]ATTCSGAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAAC</left_flank>
        <right_flank>ATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTCTCTTTCTGACAATGTGGAAAAGTTTTATGGATCACTGAGCAAGATTGCAGTACGAGTGAAAGATAGAATTGGGCTAATTAGAGCCATCAAGAAGCTTCTGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAG</canonical>
            <polymorphic>GGTTCTCTTTCTGACAATGTGGAAAAGTTTTATGGATCACTGAGCAAGATTGCAGTACGAGTGAAAGATAGAATTGGGCTAATTAGAGCCATCAAGAAGCTTCTGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACYATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATAGAGAACAAGTCCTGACTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTATTGCTTCTTTGATTTCATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAA</canonical_amplicon>
		<polymorphic_amplicon>GATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACYATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27083</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227623</contig_pos>
        <strand>+</strand>
        <context>CGAMCYATTC[C/G]GAAATGAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTC</left_flank>
        <right_flank>GAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTTCTGACAATGTGGAAAAGTTTTATGGATCACTGAGCAAGATTGCAGTACGAGTGAAAGATAGAATTGGGCTAATTAGAGCCATCAAGAAGCTTCTGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTT</canonical>
            <polymorphic>TCTTTCTGACAATGTGGAAAAGTTTTATGGATCACTGAGCAAGATTGCAGTACGAGTGAAAGATAGAATTGGGCTAATTAGAGCCATCAAGAAGCTTCTGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCSGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACAAGTCCTGACTGATCTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAGTTGATTTATTGCTTCTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTC</canonical_amplicon>
		<polymorphic_amplicon>GAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCSGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27084</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227641</contig_pos>
        <strand>+</strand>
        <context>ACTGGCCAGC[A/G]AAGATACWAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGC</left_flank>
        <right_flank>AAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTTTTATGGATCACTGAGCAAGATTGCAGTACGAGTGAAAGATAGAATTGGGCTAATTAGAGCCATCAAGAAGCTTCTGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAG</canonical>
            <polymorphic>AAAGTTTTATGGATCACTGAGCAAGATTGCAGTACGAGTGAAAGATAGAATTGGGCTAATTAGAGCCATCAAGAAGCTTCTGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCRAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTTTGGCGTAATTTGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TCGGAACACTTTAGAAGTTGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGA</canonical_amplicon>
		<polymorphic_amplicon>ATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCRAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27085</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227649</contig_pos>
        <strand>+</strand>
        <context>GCRAAGATAC[A/T]AATGAAATCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATAC</left_flank>
        <right_flank>AATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGATCACTGAGCAAGATTGCAGTACGAGTGAAAGATAGAATTGGGCTAATTAGAGCCATCAAGAAGCTTCTGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAA</canonical>
            <polymorphic>ATGGATCACTGAGCAAGATTGCAGTACGAGTGAAAGATAGAATTGGGCTAATTAGAGCCATCAAGAAGCTTCTGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACWAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAAAGTTGCCGATAAATACAG</pcr_primer_p1>
		<pcr_primer_p2>CGATTTGATGTACTTTATTGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>436</pcr_amplicon_size>
		<canonical_amplicon>TCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCG</canonical_amplicon>
		<polymorphic_amplicon>TCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACWAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27086</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227698</contig_pos>
        <strand>+</strand>
        <context>TTCCGAACCA[C/T]TTCAAMRMCT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCA</left_flank>
        <right_flank>TTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTAGAGCCATCAAGAAGCTTCTGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGAT</canonical>
            <polymorphic>AATTAGAGCCATCAAGAAGCTTCTGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAYTTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>205 187 163 135 89 72 52 35 34 28 0</canonical_bands>
                <polymorphic_bands>221 205 163 135 89 72 52 35 28 0</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTAAAGTTGCCGATAAATACAG</pcr_primer_p1>
		<pcr_primer_p2>CGATTTGATGTACTTTATTGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>436</pcr_amplicon_size>
		<canonical_amplicon>TCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCG</canonical_amplicon>
		<polymorphic_amplicon>TCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAYTTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27087</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227704</contig_pos>
        <strand>+</strand>
        <context>ACCAYTTCAA[A/C]RMCTTWTTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAA</left_flank>
        <right_flank>ATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCATCAAGAAGCTTCTGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAA</canonical>
            <polymorphic>AGCCATCAAGAAGCTTCTGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAAMATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAAATCAAAGAAGCAATAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTGATCCGATTTGATGTACT</pcr_primer_p2>
		<pcr_amplicon_size>366</pcr_amplicon_size>
		<canonical_amplicon>AATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAA</canonical_amplicon>
		<polymorphic_amplicon>AATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAAMATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27088</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227705</contig_pos>
        <strand>+</strand>
        <context>CCAYTTCAAM[A/G]MCTTWTTCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAAC</left_flank>
        <right_flank>TCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCATCAAGAAGCTTCTGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAA</canonical>
            <polymorphic>GCCATCAAGAAGCTTCTGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACRTCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAAATCAAAGAAGCAATAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTGATCCGATTTGATGTACT</pcr_primer_p2>
		<pcr_amplicon_size>366</pcr_amplicon_size>
		<canonical_amplicon>AATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAA</canonical_amplicon>
		<polymorphic_amplicon>AATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACRTCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27089</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227706</contig_pos>
        <strand>+</strand>
        <context>CAYTTCAAMR[A/C]CTTWTTCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACA</left_flank>
        <right_flank>CTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATCAAGAAGCTTCTGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAG</canonical>
            <polymorphic>CCATCAAGAAGCTTCTGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACAMCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAAATCAAAGAAGCAATAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTGATCCGATTTGATGTACT</pcr_primer_p2>
		<pcr_amplicon_size>366</pcr_amplicon_size>
		<canonical_amplicon>AATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAA</canonical_amplicon>
		<polymorphic_amplicon>AATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACAMCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27090</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227710</contig_pos>
        <strand>+</strand>
        <context>TCAAMRMCTT[A/T]TTCAAACATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTT</left_flank>
        <right_flank>TTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGAAGCTTCTGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATT</canonical>
            <polymorphic>CAAGAAGCTTCTGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTWTTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAGAAGCAATAAATCAACTTC</pcr_primer_p1>
		<pcr_primer_p2>ACTTTTGATCCGATTTGATG</pcr_primer_p2>
		<pcr_amplicon_size>360</pcr_amplicon_size>
		<canonical_amplicon>CAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGT</canonical_amplicon>
		<polymorphic_amplicon>CAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTWTTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27091</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227721</contig_pos>
        <strand>+</strand>
        <context>TTCAAACATC[G/T]AYTSTCCTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATC</left_flank>
        <right_flank>ACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGAT</canonical>
            <polymorphic>TGGATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCKACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>388 327 107 98 65 15</canonical_bands>
                <polymorphic_bands>388 327 122 98 65</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>307 208 202 99 94 90</canonical_bands>
                <polymorphic_bands>307 301 208 94 90</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAAATCAACTTCTAAAGTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CCGATTTGATGTACTTTATTGAT</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</canonical_amplicon>
		<polymorphic_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCKACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27092</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227723</contig_pos>
        <strand>+</strand>
        <context>CAAACATCKA[C/T]TSTCCTCAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGA</left_flank>
        <right_flank>TCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTA</canonical>
            <polymorphic>GATATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGAYTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAAATCAACTTCTAAAGTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CCGATTTGATGTACTTTATTGAT</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</canonical_amplicon>
		<polymorphic_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGAYTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27093</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227725</contig_pos>
        <strand>+</strand>
        <context>AACATCKAYT[C/G]TCCTCAATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACT</left_flank>
        <right_flank>TCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGG</canonical>
            <polymorphic>TATGAAAACCGATCAGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTSTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>311 208 202 99 94 86</canonical_bands>
                <polymorphic_bands>311 301 208 94 86</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAAATCAACTTCTAAAGTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CCGATTTGATGTACTTTATTGAT</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</canonical_amplicon>
		<polymorphic_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTSTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27094</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227739</contig_pos>
        <strand>+</strand>
        <context>TCAATTCGAC[C/T]GMTCTCAART</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGAC</left_flank>
        <right_flank>GATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATT</canonical>
            <polymorphic>AGAAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACYGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAAATCAACTTCTAAAGTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CCGATTTGATGTACTTTATTGAT</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</canonical_amplicon>
		<polymorphic_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACYGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27095</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227741</contig_pos>
        <strand>+</strand>
        <context>AATTCGACYG[A/C]TCTCAARTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTG</left_flank>
        <right_flank>TCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTC</canonical>
            <polymorphic>AAATATTTGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGMTCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>192 177 151 102 96 76 60 51 46 27 16 6</canonical_bands>
                <polymorphic_bands>243 177 151 102 96 76 60 46 27 16 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAAATCAACTTCTAAAGTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CCGATTTGATGTACTTTATTGAT</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</canonical_amplicon>
		<polymorphic_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGMTCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27096</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227748</contig_pos>
        <strand>+</strand>
        <context>CYGMTCTCAA[A/G]TATGASGRRA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAA</left_flank>
        <right_flank>TATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGAC</canonical>
            <polymorphic>TGAAGCGAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAARTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>505 275 220</canonical_bands>
                <polymorphic_bands>725 275</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAAATCAACTTCTAAAGTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CCGATTTGATGTACTTTATTGAT</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</canonical_amplicon>
		<polymorphic_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAARTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27097</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227754</contig_pos>
        <strand>+</strand>
        <context>TCAARTATGA[C/G]GRRAAAGTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGA</left_flank>
        <right_flank>GGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACA</canonical>
            <polymorphic>GAGGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGASGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAAATCAACTTCTAAAGTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CCGATTTGATGTACTTTATTGAT</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</canonical_amplicon>
		<polymorphic_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGASGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27098</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227756</contig_pos>
        <strand>+</strand>
        <context>AARTATGASG[A/G]RAAAGTGATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACG</left_flank>
        <right_flank>GAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAA</canonical>
            <polymorphic>GGAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGRGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAAATCAACTTCTAAAGTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CCGATTTGATGTACTTTATTGAT</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</canonical_amplicon>
		<polymorphic_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGRGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27099</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227757</contig_pos>
        <strand>+</strand>
        <context>ARTATGASGR[A/G]AAAGTGATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGG</left_flank>
        <right_flank>AAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAA</canonical>
            <polymorphic>GAGCCATTAAAGATCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGRAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAAATCAACTTCTAAAGTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CCGATTTGATGTACTTTATTGAT</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</canonical_amplicon>
		<polymorphic_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGRAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27100</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227770</contig_pos>
        <strand>+</strand>
        <context>AGTGATAACT[A/C]GTGGTCTRCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACT</left_flank>
        <right_flank>GTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAG</canonical>
            <polymorphic>TCTGACTGCACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTMGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAAATCAACTTCTAAAGTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CCGATTTGATGTACTTTATTGAT</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</canonical_amplicon>
		<polymorphic_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTMGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27101</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227778</contig_pos>
        <strand>+</strand>
        <context>CTMGTGGTCT[A/G]CTTGGATACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCT</left_flank>
        <right_flank>CTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGA</canonical>
            <polymorphic>CACACTTCGAAAATACAACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTRCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAAATCAACTTCTAAAGTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CCGATTTGATGTACTTTATTGAT</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</canonical_amplicon>
		<polymorphic_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTRCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27102</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227794</contig_pos>
        <strand>+</strand>
        <context>ATACAAAGAT[C/T]TGRAYAATAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGAT</left_flank>
        <right_flank>TGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTG</canonical>
            <polymorphic>AACAAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATYTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>192 151 151 102 99 96 76 60 51 16 6</canonical_bands>
                <polymorphic_bands>192 151 151 111 102 99 96 76 16 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>496 405 99</canonical_bands>
                <polymorphic_bands>901 99</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>339 253 243 99 60 6</canonical_bands>
                <polymorphic_bands>339 303 253 99 6</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>237 206 157 104 68 55 55 52 29 29 8</canonical_bands>
                <polymorphic_bands>237 206 159 157 68 55 52 29 29 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAAATCAACTTCTAAAGTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CCGATTTGATGTACTTTATTGAT</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</canonical_amplicon>
		<polymorphic_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATYTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27103</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227797</contig_pos>
        <strand>+</strand>
        <context>CAAAGATYTG[A/G]AYAATATTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTG</left_flank>
        <right_flank>ACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAA</canonical>
            <polymorphic>AAGGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGRACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>237 206 157 104 68 55 55 52 29 29 8</canonical_bands>
                <polymorphic_bands>237 206 159 157 68 55 52 29 29 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAAATCAACTTCTAAAGTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CCGATTTGATGTACTTTATTGAT</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</canonical_amplicon>
		<polymorphic_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGRACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27104</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227799</contig_pos>
        <strand>+</strand>
        <context>AAGATYTGRA[C/T]AATATTTGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAA</left_flank>
        <right_flank>AATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAA</canonical>
            <polymorphic>GGATTATTGAAGAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAAYAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAAATCAACTTCTAAAGTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CCGATTTGATGTACTTTATTGAT</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</canonical_amplicon>
		<polymorphic_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAAYAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27105</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227810</contig_pos>
        <strand>+</strand>
        <context>AATATTTGGA[C/G]KGATTTTGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGA</left_flank>
        <right_flank>TGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATC</canonical>
            <polymorphic>GAATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGASTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>191 156 143 100 76 59 51 42 39 35 24 23 23 19 10 9</canonical_bands>
                <polymorphic_bands>191 156 143 100 90 76 59 42 35 24 23 23 19 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAAATCAACTTCTAAAGTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CCGATTTGATGTACTTTATTGAT</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</canonical_amplicon>
		<polymorphic_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGASTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27106</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227811</contig_pos>
        <strand>+</strand>
        <context>ATATTTGGAS[G/T]GATTTTGAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAG</left_flank>
        <right_flank>GATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCT</canonical>
            <polymorphic>AATCAAAAAAATCAAGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGKGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>191 156 143 100 76 59 51 42 39 36 24 23 23 18 10 9</canonical_bands>
                <polymorphic_bands>191 156 143 100 90 76 59 42 36 24 23 23 18 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAAATCAACTTCTAAAGTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CCGATTTGATGTACTTTATTGAT</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</canonical_amplicon>
		<polymorphic_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGKGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27107</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227825</contig_pos>
        <strand>+</strand>
        <context>TTTGAGAATC[A/C]ATGGTTTCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATC</left_flank>
        <right_flank>ATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTC</canonical>
            <polymorphic>AGTGAAAGAATTCTAGGAGTTTCCGACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCMATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAAATCAACTTCTAAAGTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CCGATTTGATGTACTTTATTGAT</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</canonical_amplicon>
		<polymorphic_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCMATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27108</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227850</contig_pos>
        <strand>+</strand>
        <context>ATGTTCTTTC[A/G]RATCTGGATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTC</left_flank>
        <right_flank>GATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGA</canonical>
            <polymorphic>ACTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCRGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>339 243 197 155 60 6</canonical_bands>
                <polymorphic_bands>339 243 197 155 66</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAAATCAACTTCTAAAGTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CCGATTTGATGTACTTTATTGAT</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</canonical_amplicon>
		<polymorphic_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCRGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27109</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227851</contig_pos>
        <strand>+</strand>
        <context>TGTTCTTTCR[A/G]ATCTGGATCC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCG</left_flank>
        <right_flank>ATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGAT</canonical>
            <polymorphic>CTTGAAAACGACAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGRATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>192 156 151 102 96 94 76 60 51 16 6</canonical_bands>
                <polymorphic_bands>192 156 151 102 96 94 76 66 51 16</polymorphic_bands>
            </assay>
            <assay>
                <site>GATNNNNATC</site>
                <isoschizomers>
                    <enzyme>BsaBI</enzyme>
                    <enzyme>Bse8I</enzyme>
                    <enzyme>BseJI</enzyme>
                    <enzyme>BsiBI</enzyme>
                    <enzyme>BsrBRI</enzyme>
                    <enzyme>MamI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>339 243 196 156 60 6</canonical_bands>
                <polymorphic_bands>339 243 196 156 66</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>237 206 157 109 104 68 55 29 27 8</canonical_bands>
                <polymorphic_bands>237 212 206 109 104 68 29 27 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAAATCAACTTCTAAAGTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CCGATTTGATGTACTTTATTGAT</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</canonical_amplicon>
		<polymorphic_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGRATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27110</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227862</contig_pos>
        <strand>+</strand>
        <context>ATCTGGATCC[C/G]ACGAKTTTRA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCC</left_flank>
        <right_flank>ACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAA</canonical>
            <polymorphic>CAGTTGAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCSACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>191 156 110 100 76 59 51 42 41 39 38 24 23 23 10 9 8</canonical_bands>
                <polymorphic_bands>191 156 110 100 76 74 59 42 41 39 38 24 23 10 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAAATCAACTTCTAAAGTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CCGATTTGATGTACTTTATTGAT</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</canonical_amplicon>
		<polymorphic_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCSACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27111</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227867</contig_pos>
        <strand>+</strand>
        <context>GATCCSACGA[G/T]TTTRAAARAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGA</left_flank>
        <right_flank>TTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATT</canonical>
            <polymorphic>GAATTGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAKTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAAATCAACTTCTAAAGTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CCGATTTGATGTACTTTATTGAT</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</canonical_amplicon>
		<polymorphic_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAKTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27112</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227871</contig_pos>
        <strand>+</strand>
        <context>CSACGAKTTT[A/G]AAARAAGGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTT</left_flank>
        <right_flank>AAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTT</canonical>
            <polymorphic>TGCTTCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTRAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>339 277 171 159 28 26</canonical_bands>
                <polymorphic_bands>616 171 159 28 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAAATCAACTTCTAAAGTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CCGATTTGATGTACTTTATTGAT</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</canonical_amplicon>
		<polymorphic_amplicon>AATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTRAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27113</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227875</contig_pos>
        <strand>+</strand>
        <context>GAKTTTRAAA[A/G]AAGGTCTYGW</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAA</left_flank>
        <right_flank>AAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTG</canonical>
            <polymorphic>TCTGAAAATCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAARAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGGTTTCGACAAAATGTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTGTGATATTCTTGACTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>207</pcr_amplicon_size>
		<canonical_amplicon>ATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</canonical_amplicon>
		<polymorphic_amplicon>ATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAARAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27114</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227883</contig_pos>
        <strand>+</strand>
        <context>AARAAGGTCT[C/T]GWKAGTTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCT</left_flank>
        <right_flank>GTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACC</canonical>
            <polymorphic>TCAGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTYGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTCGACAAAATGTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTGATATTCTTGACTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>205</pcr_amplicon_size>
		<canonical_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTYGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27115</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227885</contig_pos>
        <strand>+</strand>
        <context>RAAGGTCTYG[A/T]KAGTTTGAAR</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTG</left_flank>
        <right_flank>GAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAA</canonical>
            <polymorphic>AGAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGWGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>191 156 100 87 76 59 51 42 41 39 38 31 24 23 23 10 9</canonical_bands>
                <polymorphic_bands>191 156 100 87 76 65 59 51 41 39 38 31 24 23 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTCGACAAAATGTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTGATATTCTTGACTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>205</pcr_amplicon_size>
		<canonical_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGWGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27116</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227886</contig_pos>
        <strand>+</strand>
        <context>AAGGTCTYGW[G/T]AGTTTGAARY</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGT</left_flank>
        <right_flank>AGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAA</canonical>
            <polymorphic>GAAACAATGAAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTKAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>191 156 100 86 76 59 51 42 41 39 38 32 24 23 23 10 9</canonical_bands>
                <polymorphic_bands>191 156 100 86 76 65 59 51 41 39 38 32 24 23 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTCGACAAAATGTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTGATATTCTTGACTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>205</pcr_amplicon_size>
		<canonical_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTKAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27117</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227895</contig_pos>
        <strand>+</strand>
        <context>WKAGTTTGAA[A/G]YCATTCSTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAA</left_flank>
        <right_flank>CCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTT</canonical>
            <polymorphic>AAGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAARCCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTCGACAAAATGTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTGATATTCTTGACTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>205</pcr_amplicon_size>
		<canonical_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAARCCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27118</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227896</contig_pos>
        <strand>+</strand>
        <context>KAGTTTGAAR[C/T]CATTCSTATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAA</left_flank>
        <right_flank>CATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTC</canonical>
            <polymorphic>AGGAAAGGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAAYCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTCGACAAAATGTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTGATATTCTTGACTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>205</pcr_amplicon_size>
		<canonical_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAAYCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27119</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227902</contig_pos>
        <strand>+</strand>
        <context>GAARYCATTC[C/G]TATCTKCATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTC</left_flank>
        <right_flank>TATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTT</canonical>
            <polymorphic>GGATATGAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCSTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTCGACAAAATGTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTGATATTCTTGACTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>205</pcr_amplicon_size>
		<canonical_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCSTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27120</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227908</contig_pos>
        <strand>+</strand>
        <context>ATTCSTATCT[G/T]CATTGGATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCT</left_flank>
        <right_flank>CATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAA</canonical>
            <polymorphic>GAAGAAGAAGAAGAAGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTKCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTCGACAAAATGTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTGATATTCTTGACTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>205</pcr_amplicon_size>
		<canonical_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTKCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27121</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227922</contig_pos>
        <strand>+</strand>
        <context>TGGATTCTCT[C/T]ATTCCAYYAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCT</left_flank>
        <right_flank>ATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGT</canonical>
            <polymorphic>AGGATAGAGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTYATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTCGACAAAATGTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTGATATTCTTGACTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>205</pcr_amplicon_size>
		<canonical_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTYATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27122</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227929</contig_pos>
        <strand>+</strand>
        <context>TCTYATTCCA[C/T]YAAAACWWTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCA</left_flank>
        <right_flank>TAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGA</canonical>
            <polymorphic>AGAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCAYTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>191 156 100 76 75 59 51 43 42 41 39 38 24 23 23 10 9</canonical_bands>
                <polymorphic_bands>191 156 142 76 75 59 51 43 41 39 38 24 23 23 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTCGACAAAATGTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTGATATTCTTGACTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>205</pcr_amplicon_size>
		<canonical_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCAYTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27123</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227930</contig_pos>
        <strand>+</strand>
        <context>CTYATTCCAY[C/T]AAAACWWTTS</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCAC</left_flank>
        <right_flank>AAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAG</canonical>
            <polymorphic>GAACAAGTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACYAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTCGACAAAATGTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTGATATTCTTGACTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>205</pcr_amplicon_size>
		<canonical_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACYAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27124</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227936</contig_pos>
        <strand>+</strand>
        <context>CCAYYAAAAC[A/T]WTTSGAYRAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAAC</left_flank>
        <right_flank>ATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAA</canonical>
            <polymorphic>GTCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACWATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>205 187 163 109 105 96 52 34 28 21</canonical_bands>
                <polymorphic_bands>233 187 163 109 105 96 52 34 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTCGACAAAATGTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTGATATTCTTGACTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>205</pcr_amplicon_size>
		<canonical_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACWATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27125</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227937</contig_pos>
        <strand>+</strand>
        <context>CAYYAAAACW[A/T]TTSGAYRACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACA</left_flank>
        <right_flank>TTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAA</canonical>
            <polymorphic>TCCTGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAWTTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>205 187 163 109 105 97 52 34 28 20</canonical_bands>
                <polymorphic_bands>233 187 163 109 105 97 52 34 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTCGACAAAATGTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTGATATTCTTGACTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>205</pcr_amplicon_size>
		<canonical_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAWTTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27126</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227940</contig_pos>
        <strand>+</strand>
        <context>YAAAACWWTT[C/G]GAYRACGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATT</left_flank>
        <right_flank>GATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGT</canonical>
            <polymorphic>TGACTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTSGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTCGACAAAATGTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTGATATTCTTGACTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>205</pcr_amplicon_size>
		<canonical_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTSGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27127</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227943</contig_pos>
        <strand>+</strand>
        <context>AACWWTTSGA[C/T]RACGAAAACG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGA</left_flank>
        <right_flank>AACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGA</canonical>
            <polymorphic>CTGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGAYAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTCGACAAAATGTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTGATATTCTTGACTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>205</pcr_amplicon_size>
		<canonical_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGAYAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27128</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227944</contig_pos>
        <strand>+</strand>
        <context>ACWWTTSGAY[A/G]ACGAAAACGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGAT</left_flank>
        <right_flank>ACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGAT</canonical>
            <polymorphic>TGATCTTTGGCGTAATTTGAAACGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATRACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTCGACAAAATGTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTGATATTCTTGACTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>205</pcr_amplicon_size>
		<canonical_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATRACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27129</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227966</contig_pos>
        <strand>+</strand>
        <context>AAGAAAACAA[C/T]TCTGGMTCTY</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAA</left_flank>
        <right_flank>TCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGA</canonical>
            <polymorphic>CGCGTGCAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAAYTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>205 187 163 113 109 105 43 34 28 13</canonical_bands>
                <polymorphic_bands>205 191 187 113 109 105 43 34 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTCGACAAAATGTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTGATATTCTTGACTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>205</pcr_amplicon_size>
		<canonical_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAAYTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27130</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227972</contig_pos>
        <strand>+</strand>
        <context>ACAAYTCTGG[A/C]TCTYGCRAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGG</left_flank>
        <right_flank>TCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGT</canonical>
            <polymorphic>CAAACTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGMTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>336 286 163 101 80 34</canonical_bands>
                <polymorphic_bands>437 286 163 80 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTCGACAAAATGTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTGATATTCTTGACTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>205</pcr_amplicon_size>
		<canonical_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGMTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27131</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227976</contig_pos>
        <strand>+</strand>
        <context>YTCTGGMTCT[C/T]GCRAAAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCT</left_flank>
        <right_flank>GCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGT</canonical>
            <polymorphic>CTCAAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTYGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 372 129</canonical_bands>
                <polymorphic_bands>871 129</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGCGA</site>
                <isoschizomers>
                    <enzyme>Bsp68I</enzyme>
                    <enzyme>NruI</enzyme>
                </isoschizomers>
                <canonical_bands>499 372 129</canonical_bands>
                <polymorphic_bands>871 129</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>250 223 122 116 105 50 47 42 31 14</canonical_bands>
                <polymorphic_bands>250 223 164 116 105 50 47 31 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTCGACAAAATGTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTGATATTCTTGACTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>205</pcr_amplicon_size>
		<canonical_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTYGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27132</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>227979</contig_pos>
        <strand>+</strand>
        <context>TGGMTCTYGC[A/G]AAAAAAATCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGC</left_flank>
        <right_flank>AAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAA</canonical>
            <polymorphic>AAATAAATGAGGTCGTGGATTATAAAAAAAAATTGGAAGGATTCTTGAGTTTAACATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCRAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 372 126</canonical_bands>
                <polymorphic_bands>874 126</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGCGA</site>
                <isoschizomers>
                    <enzyme>Bsp68I</enzyme>
                    <enzyme>NruI</enzyme>
                </isoschizomers>
                <canonical_bands>502 372 126</canonical_bands>
                <polymorphic_bands>874 126</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>250 223 122 116 105 50 44 42 31 17</canonical_bands>
                <polymorphic_bands>250 223 164 116 105 50 44 31 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTCGACAAAATGTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTAACAACCTCTCCAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCRAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27133</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>228034</contig_pos>
        <strand>+</strand>
        <context>TATCACAAAT[G/T]YCAMAACTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAAT</left_flank>
        <right_flank>TCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAG</canonical>
            <polymorphic>ATCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATKTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGAAAACGAGAAGAAAACA</pcr_primer_p1>
		<pcr_primer_p2>TTTGATGAGACCATTCATTAACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAA</canonical_amplicon>
		<polymorphic_amplicon>ACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATKTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27134</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>228035</contig_pos>
        <strand>+</strand>
        <context>ATCACAAATK[C/T]CAMAACTCCW</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATG</left_flank>
        <right_flank>CACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGA</canonical>
            <polymorphic>TCGCCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGYCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGAAAACGAGAAGAAAACA</pcr_primer_p1>
		<pcr_primer_p2>TTTGATGAGACCATTCATTAACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAA</canonical_amplicon>
		<polymorphic_amplicon>ACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGYCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27135</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>228038</contig_pos>
        <strand>+</strand>
        <context>ACAAATKYCA[A/C]AACTCCWTWY</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCA</left_flank>
        <right_flank>AACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAA</canonical>
            <polymorphic>CCGGCGAAGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCAMAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>156 149 100 97 87 76 59 51 42 41 39 38 23 23 10 9</canonical_bands>
                <polymorphic_bands>156 149 100 97 87 76 68 51 42 41 39 38 23 23 10</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGAAAACGAGAAGAAAACA</pcr_primer_p1>
		<pcr_primer_p2>TTTGATGAGACCATTCATTAACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAA</canonical_amplicon>
		<polymorphic_amplicon>ACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCAMAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27136</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>228045</contig_pos>
        <strand>+</strand>
        <context>YCAMAACTCC[A/T]TWYGAAGAAR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCC</left_flank>
        <right_flank>TTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTT</canonical>
            <polymorphic>AGGATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCWTTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAAGTACATCAAATCGGATCA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCAATGGTTGTCCTAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCWTTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27137</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>228047</contig_pos>
        <strand>+</strand>
        <context>AMAACTCCWT[A/T]YGAAGAARYC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCAT</left_flank>
        <right_flank>TGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTA</canonical>
            <polymorphic>GATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATWTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAAGTACATCAAATCGGATCA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCAATGGTTGTCCTAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATWTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27138</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>228048</contig_pos>
        <strand>+</strand>
        <context>MAACTCCWTW[C/T]GAAGAARYCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATT</left_flank>
        <right_flank>GAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTAC</canonical>
            <polymorphic>ATCTTCAAGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTYGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAAGTACATCAAATCGGATCA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCAATGGTTGTCCTAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTYGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27139</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>228055</contig_pos>
        <strand>+</strand>
        <context>WTWYGAAGAA[A/G]YCTCTRCATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAA</left_flank>
        <right_flank>TCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGT</canonical>
            <polymorphic>AGACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAARTCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAAGTACATCAAATCGGATCA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCAATGGTTGTCCTAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAARTCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27140</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>228056</contig_pos>
        <strand>+</strand>
        <context>TWYGAAGAAR[C/T]CTCTRCATGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAA</left_flank>
        <right_flank>CTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTT</canonical>
            <polymorphic>GACATTTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAAYCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAAGTACATCAAATCGGATCA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCAATGGTTGTCCTAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAAYCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27141</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>228061</contig_pos>
        <strand>+</strand>
        <context>AGAARYCTCT[A/G]CATGCATCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCT</left_flank>
        <right_flank>CATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCT</canonical>
            <polymorphic>TTGGAATGCATCTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTRCATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAAGTACATCAAATCGGATCA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCAATGGTTGTCCTAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTRCATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27142</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>228072</contig_pos>
        <strand>+</strand>
        <context>CATGCATCAA[A/G]CCRCTSCAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAA</left_flank>
        <right_flank>CCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTT</canonical>
            <polymorphic>CTAAAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAARCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>336 286 180 101 63 34</canonical_bands>
                <polymorphic_bands>336 286 180 135 63</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAAGTACATCAAATCGGATCA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCAATGGTTGTCCTAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAARCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27143</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>228075</contig_pos>
        <strand>+</strand>
        <context>GCATCAARCC[A/G]CTSCAAGCSA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCC</left_flank>
        <right_flank>CTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCA</canonical>
            <polymorphic>AAGTTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCRCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAAGTACATCAAATCGGATCA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCAATGGTTGTCCTAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCRCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27144</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>228078</contig_pos>
        <strand>+</strand>
        <context>TCAARCCRCT[C/G]CAAGCSATCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCT</left_flank>
        <right_flank>CAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATA</canonical>
            <polymorphic>TTGCCGATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTSCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAAGTACATCAAATCGGATCA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCAATGGTTGTCCTAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTSCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27145</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>228084</contig_pos>
        <strand>+</strand>
        <context>CRCTSCAAGC[C/G]ATCCAAACMC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGC</left_flank>
        <right_flank>ATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAA</canonical>
            <polymorphic>ATAAATACAGCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCSATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>312 155 151 96 77 76 60 51 16 6</canonical_bands>
                <polymorphic_bands>312 155 151 96 92 77 60 51 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAAGTACATCAAATCGGATCA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCAATGGTTGTCCTAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCSATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27146</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>228093</contig_pos>
        <strand>+</strand>
        <context>CSATCCAAAC[A/C]CCACCGGATC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAAC</left_flank>
        <right_flank>CCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCA</canonical>
            <polymorphic>GCAAAACCTTCGCGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACMCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAAGTACATCAAATCGGATCA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCAATGGTTGTCCTAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACMCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27147</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>228105</contig_pos>
        <strand>+</strand>
        <context>CACCGGATCA[A/C]RCMATGCTGS</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCA</left_flank>
        <right_flank>GCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGT</canonical>
            <polymorphic>CGAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAMGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>336 286 213 101 34 30</canonical_bands>
                <polymorphic_bands>336 320 213 101 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAAGTACATCAAATCGGATCA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCAATGGTTGTCCTAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAMGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27148</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>228106</contig_pos>
        <strand>+</strand>
        <context>ACCGGATCAM[A/G]CMATGCTGSM</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAA</left_flank>
        <right_flank>CCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTC</canonical>
            <polymorphic>GAAACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAARCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>336 286 214 101 34 29</canonical_bands>
                <polymorphic_bands>336 320 214 101 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAAGTACATCAAATCGGATCA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCAATGGTTGTCCTAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAARCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27149</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>228108</contig_pos>
        <strand>+</strand>
        <context>CGGATCAMRC[A/C]ATGCTGSMAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGC</left_flank>
        <right_flank>ATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTCCT</canonical>
            <polymorphic>AACTCGAACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCMATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 454 46</canonical_bands>
                <polymorphic_bands>546 454</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>336 286 216 101 34 27</canonical_bands>
                <polymorphic_bands>336 320 216 101 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAAGTACATCAAATCGGATCA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCAATGGTTGTCCTAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCMATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27150</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>228115</contig_pos>
        <strand>+</strand>
        <context>MRCMATGCTG[C/G]MAGRAGTTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTG</left_flank>
        <right_flank>AAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTCCTAAAAAAG</canonical>
            <polymorphic>ACCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGSAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTCCTAAAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAAGTACATCAAATCGGATCA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCAATGGTTGTCCTAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGSAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27151</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>228116</contig_pos>
        <strand>+</strand>
        <context>RCMATGCTGS[A/C]AGRAGTTGCM</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGA</left_flank>
        <right_flank>AGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTCCTAAAAAAGT</canonical>
            <polymorphic>CCATTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAMAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTCCTAAAAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAAGTACATCAAATCGGATCA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCAATGGTTGTCCTAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAMAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27152</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>228119</contig_pos>
        <strand>+</strand>
        <context>ATGCTGSMAG[A/G]AGTTGCMART</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAG</left_flank>
        <right_flank>AGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTCCTAAAAAAGTCCC</canonical>
            <polymorphic>TTCAGAAATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGRAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTCCTAAAAAAGTCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAAGTACATCAAATCGGATCA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCAATGGTTGTCCTAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGRAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27153</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>228126</contig_pos>
        <strand>+</strand>
        <context>MAGRAGTTGC[A/C]ARTTTTTCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGC</left_flank>
        <right_flank>AATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTCCTAAAAAAGTCCCGAAAATT</canonical>
            <polymorphic>ATGAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCMAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTCCTAAAAAAGTCCCGAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>500 391 109</canonical_bands>
                <polymorphic_bands>609 391</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAAGTACATCAAATCGGATCA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCAATGGTTGTCCTAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCMAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27154</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>228128</contig_pos>
        <strand>+</strand>
        <context>GRAGTTGCMA[A/G]TTTTTCTGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGA</left_flank>
        <right_flank>TTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTCCTAAAAAAGTCCCGAAAATTGC</canonical>
            <polymorphic>GAACTGGCCAGCAAAGATACCAATGAAATCAAAGAAGCAATAAATCAACTTCTAAAGTGTTCCGAACCAATTCAACATCTTATTCAAACATCGACTCTCCTCAATTCGACTGATCTCAAGTATGACGGGAAAGTGATAACTCGTGGTCTGCTTGGATACAAAGATCTGAACAATATTTGGAGTGATTTTGAGAATCAATGGTTTCGACAAAATGTTCTTTCGGATCTGGATCCCACGAGTTTAAAAAAAGGTCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGARTTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTCCTAAAAAAGTCCCGAAAATTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>498 393 109</canonical_bands>
                <polymorphic_bands>607 393</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>205 163 113 109 105 86 83 68 34 28 6</canonical_bands>
                <polymorphic_bands>272 205 113 105 86 83 68 34 28 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAAGTACATCAAATCGGATCA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCAATGGTTGTCCTAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGARTTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27155</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>228379</contig_pos>
        <strand>+</strand>
        <context>GTTCCTGGCA[A/T]AACCAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCA</left_flank>
        <right_flank>AACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGA</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTCCTAAAAAAGTCCCGAAAATTGCTAAAATTATTGCCGAAATGAGAATTGGGCATTTCGAAACATCTTATCTCGTTTTGTTAAAATTTCTAAAAAGTTGGAAACTACAAAATTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAACTGAAAAATTCTGGACCATTTTTGTAGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCAAGAGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAG</canonical>
            <polymorphic>TCTTGTGAGTTTGAAACCATTCCTATCTTCATTGGATTCTCTTATTCCACTAAAACAATTGGATAACGAAAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAWAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTCCTAAAAAAGTCCCGAAAATTGCTAAAATTATTGCCGAAATGAGAATTGGGCATTTCGAAACATCTTATCTCGTTTTGTTAAAATTTCTAAAAAGTTGGAAACTACAAAATTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAACTGAAAAATTCTGGACCATTTTTGTAGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCAAGAGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTTCAAAAGATTGTCAAACA</pcr_primer_p1>
		<pcr_primer_p2>TGAAAAAGAAAAACTAACCGTAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCA</canonical_amplicon>
		<polymorphic_amplicon>AAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAWAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27156</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>228448</contig_pos>
        <strand>+</strand>
        <context>TGTGGATAGT[G/T]CTCTGAATTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGT</left_flank>
        <right_flank>CTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTCCTAAAAAAGTCCCGAAAATTGCTAAAATTATTGCCGAAATGAGAATTGGGCATTTCGAAACATCTTATCTCGTTTTGTTAAAATTTCTAAAAAGTTGGAAACTACAAAATTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAACTGAAAAATTCTGGACCATTTTTGTAGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCAAGAGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAAATTAAAGCTCTTATTTTATTTTGAATTTTCTGAAGTTTTCAAAAAAAAATTGAAA</canonical>
            <polymorphic>AAACGAGAAGAAAACAATTCTGGCTCTCGCGAAAAAAATCAATAAAGTACATCAAATCGGATCAAAAGTCAAGAATATCACAAATGTCACAACTCCATTTGAAGAAATCTCTACATGCATCAAGCCGCTCCAAGCGATCCAAACTCCACCGGATCAAGCCATGCTGAAAGAAGTTGCGAATTTTTCTGGAGAGGTTGTTAAAAATGTCAAAACATTTTCCCAGTTAATGAATGGTCTCATCAAAAAAGATCTTAAAAGTATTTCTGAAACGATTAGGACAACCATTGAATTTCTGAAGACGACACAAAACGATTCATTGGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTKCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTCCTAAAAAAGTCCCGAAAATTGCTAAAATTATTGCCGAAATGAGAATTGGGCATTTCGAAACATCTTATCTCGTTTTGTTAAAATTTCTAAAAAGTTGGAAACTACAAAATTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAACTGAAAAATTCTGGACCATTTTTGTAGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCAAGAGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAAATTAAAGCTCTTATTTTATTTTGAATTTTCTGAAGTTTTCAAAAAAAAATTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTTCAAAAGATTGTCAAACA</pcr_primer_p1>
		<pcr_primer_p2>TGAAAAAGAAAAACTAACCGTAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCA</canonical_amplicon>
		<polymorphic_amplicon>AAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTKCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27157</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>228766</contig_pos>
        <strand></strand>
        <context>ttcagacaaa[C/T]tgaaaaattc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAA</left_flank>
        <right_flank>TGAAAAATTCTGGACCATTTTTGTAGATCTTCAAAATTGACTTTTTTTTA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTCCTAAAAAAGTCCCGAAAATTGCTAAAATTATTGCCGAAATGAGAATTGGGCATTTCGAAACATCTTATCTCGTTTTGTTAAAATTTCTAAAAAGTTGGAAACTACAAAATTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAACTGAAAAATTCTGGACCATTTTTGTAGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCAAGAGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAAATTAAAGCTCTTATTTTATTTTGAATTTTCTGAAGTTTTCAAAAAAAAATTGAAAATTTCTGAACCACTTTCATTGAAAATTTGTAAAATTAAAAATATAAATTTTCAGAACGCCACCGATTTCATCTCAAAGTTGCTCAAAATCCGAAAAAGTTTCCAAGAAGTTATTAAGAAAGTGAAGAATGCGACAGTGCCCAAGGAATCCCAGAAATTGATGGATTCAAACCATTTCAAAGAAGTAGGAATTCATTCAAAAGTGATCGGAGGAAGTGTGGCAGCATTACGAGCCATTGAATCAGTTTTGAAAGCGGAAAAATCAATAAAATCAGTTATTGATATGGATACGGATGCGAAACGTGAGAAATCAACTGAT</canonical>
            <polymorphic>GGAGATGTGGGACAATGCTCGTAAACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTCCTAAAAAAGTCCCGAAAATTGCTAAAATTATTGCCGAAATGAGAATTGGGCATTTCGAAACATCTTATCTCGTTTTGTTAAAATTTCTAAAAAGTTGGAAACTACAAAATTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAAYTGAAAAATTCTGGACCATTTTTGTAGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCAAGAGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAAATTAAAGCTCTTATTTTATTTTGAATTTTCTGAAGTTTTCAAAAAAAAATTGAAAATTTCTGAACCACTTTCATTGAAAATTTGTAAAATTAAAAATATAAATTTTCAGAACGCCACCGATTTCATCTCAAAGTTGCTCAAAATCCGAAAAAGTTTCCAAGAAGTTATTAAGAAAGTGAAGAATGCGACAGTGCCCAAGGAATCCCAGAAATTGATGGATTCAAACCATTTCAAAGAAGTAGGAATTCATTCAAAAGTGATCGGAGGAAGTGTGGCAGCATTACGAGCCATTGAATCAGTTTTGAAAGCGGAAAAATCAATAAAATCAGTTATTGATATGGATACGGATGCGAAACGTGAGAAATCAACTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTATTGCCGAAATGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TGAGCAACTTTGAGATGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>402</pcr_amplicon_size>
		<canonical_amplicon>AATTATTGCCGAAATGAGAATTGGGCATTTCGAAACATCTTATCTCGTTTTGTTAAAATTTCTAAAAAGTTGGAAACTACAAAATTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAACTGAAAAATTCTGGACCATTTTTGTAGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCAAGAGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAAATTAAAGCTCTTATTTTATTTTGAATTTTCTGAAGTTTTCAAAAAAAAATTGAAAATTTCTGAACCACTTTCATTGAAAATTTGTAAAATTAAAAATATAAATTTTCAGAACGCCACCGATTTCATCTCAAAGTTGCTCA</canonical_amplicon>
		<polymorphic_amplicon>AATTATTGCCGAAATGAGAATTGGGCATTTCGAAACATCTTATCTCGTTTTGTTAAAATTTCTAAAAAGTTGGAAACTACAAAATTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAAYTGAAAAATTCTGGACCATTTTTGTAGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCAAGAGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAAATTAAAGCTCTTATTTTATTTTGAATTTTCTGAAGTTTTCAAAAAAAAATTGAAAATTTCTGAACCACTTTCATTGAAAATTTGTAAAATTAAAAATATAAATTTTCAGAACGCCACCGATTTCATCTCAAAGTTGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27158</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>228789</contig_pos>
        <strand></strand>
        <context>gaccattttt[G/T]tmgatcttca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAACCTATTCTAAAATTTTCAGACAAACTGAAAAATTCTGGACCATTTTT</left_flank>
        <right_flank>TAGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTCCTAAAAAAGTCCCGAAAATTGCTAAAATTATTGCCGAAATGAGAATTGGGCATTTCGAAACATCTTATCTCGTTTTGTTAAAATTTCTAAAAAGTTGGAAACTACAAAATTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAACTGAAAAATTCTGGACCATTTTTGTAGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCAAGAGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAAATTAAAGCTCTTATTTTATTTTGAATTTTCTGAAGTTTTCAAAAAAAAATTGAAAATTTCTGAACCACTTTCATTGAAAATTTGTAAAATTAAAAATATAAATTTTCAGAACGCCACCGATTTCATCTCAAAGTTGCTCAAAATCCGAAAAAGTTTCCAAGAAGTTATTAAGAAAGTGAAGAATGCGACAGTGCCCAAGGAATCCCAGAAATTGATGGATTCAAACCATTTCAAAGAAGTAGGAATTCATTCAAAAGTGATCGGAGGAAGTGTGGCAGCATTACGAGCCATTGAATCAGTTTTGAAAGCGGAAAAATCAATAAAATCAGTTATTGATATGGATACGGATGCGAAACGTGAGAAATCAACTGATGCTTTAATCAATGAGATGAAGCA</canonical>
            <polymorphic>AACTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTCCTAAAAAAGTCCCGAAAATTGCTAAAATTATTGCCGAAATGAGAATTGGGCATTTCGAAACATCTTATCTCGTTTTGTTAAAATTTCTAAAAAGTTGGAAACTACAAAATTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAACTGAAAAATTCTGGACCATTTTTKTAGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCAAGAGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAAATTAAAGCTCTTATTTTATTTTGAATTTTCTGAAGTTTTCAAAAAAAAATTGAAAATTTCTGAACCACTTTCATTGAAAATTTGTAAAATTAAAAATATAAATTTTCAGAACGCCACCGATTTCATCTCAAAGTTGCTCAAAATCCGAAAAAGTTTCCAAGAAGTTATTAAGAAAGTGAAGAATGCGACAGTGCCCAAGGAATCCCAGAAATTGATGGATTCAAACCATTTCAAAGAAGTAGGAATTCATTCAAAAGTGATCGGAGGAAGTGTGGCAGCATTACGAGCCATTGAATCAGTTTTGAAAGCGGAAAAATCAATAAAATCAGTTATTGATATGGATACGGATGCGAAACGTGAGAAATCAACTGATGCTTTAATCAATGAGATGAAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTATTGCCGAAATGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TGAGCAACTTTGAGATGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>402</pcr_amplicon_size>
		<canonical_amplicon>AATTATTGCCGAAATGAGAATTGGGCATTTCGAAACATCTTATCTCGTTTTGTTAAAATTTCTAAAAAGTTGGAAACTACAAAATTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAACTGAAAAATTCTGGACCATTTTTGTAGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCAAGAGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAAATTAAAGCTCTTATTTTATTTTGAATTTTCTGAAGTTTTCAAAAAAAAATTGAAAATTTCTGAACCACTTTCATTGAAAATTTGTAAAATTAAAAATATAAATTTTCAGAACGCCACCGATTTCATCTCAAAGTTGCTCA</canonical_amplicon>
		<polymorphic_amplicon>AATTATTGCCGAAATGAGAATTGGGCATTTCGAAACATCTTATCTCGTTTTGTTAAAATTTCTAAAAAGTTGGAAACTACAAAATTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAACTGAAAAATTCTGGACCATTTTTKTAGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCAAGAGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAAATTAAAGCTCTTATTTTATTTTGAATTTTCTGAAGTTTTCAAAAAAAAATTGAAAATTTCTGAACCACTTTCATTGAAAATTTGTAAAATTAAAAATATAAATTTTCAGAACGCCACCGATTTCATCTCAAAGTTGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27159</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>228791</contig_pos>
        <strand></strand>
        <context>ccatttttkt[A/C]gatcttcaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACCTATTCTAAAATTTTCAGACAAACTGAAAAATTCTGGACCATTTTTGT</left_flank>
        <right_flank>GATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTCCTAAAAAAGTCCCGAAAATTGCTAAAATTATTGCCGAAATGAGAATTGGGCATTTCGAAACATCTTATCTCGTTTTGTTAAAATTTCTAAAAAGTTGGAAACTACAAAATTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAACTGAAAAATTCTGGACCATTTTTGTAGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCAAGAGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAAATTAAAGCTCTTATTTTATTTTGAATTTTCTGAAGTTTTCAAAAAAAAATTGAAAATTTCTGAACCACTTTCATTGAAAATTTGTAAAATTAAAAATATAAATTTTCAGAACGCCACCGATTTCATCTCAAAGTTGCTCAAAATCCGAAAAAGTTTCCAAGAAGTTATTAAGAAAGTGAAGAATGCGACAGTGCCCAAGGAATCCCAGAAATTGATGGATTCAAACCATTTCAAAGAAGTAGGAATTCATTCAAAAGTGATCGGAGGAAGTGTGGCAGCATTACGAGCCATTGAATCAGTTTTGAAAGCGGAAAAATCAATAAAATCAGTTATTGATATGGATACGGATGCGAAACGTGAGAAATCAACTGATGCTTTAATCAATGAGATGAAGCAAG</canonical>
            <polymorphic>CTGGAAAAGGAGAACAATCTGGGTGAGAAACTTCAAAAGATTGTCAAACAATTTGATGATGTGCTCAAGAAGGATTTGTTCCTGGCAAAACCAAAAATAGGCTTCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTCCTAAAAAAGTCCCGAAAATTGCTAAAATTATTGCCGAAATGAGAATTGGGCATTTCGAAACATCTTATCTCGTTTTGTTAAAATTTCTAAAAAGTTGGAAACTACAAAATTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAACTGAAAAATTCTGGACCATTTTTGTMGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCAAGAGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAAATTAAAGCTCTTATTTTATTTTGAATTTTCTGAAGTTTTCAAAAAAAAATTGAAAATTTCTGAACCACTTTCATTGAAAATTTGTAAAATTAAAAATATAAATTTTCAGAACGCCACCGATTTCATCTCAAAGTTGCTCAAAATCCGAAAAAGTTTCCAAGAAGTTATTAAGAAAGTGAAGAATGCGACAGTGCCCAAGGAATCCCAGAAATTGATGGATTCAAACCATTTCAAAGAAGTAGGAATTCATTCAAAAGTGATCGGAGGAAGTGTGGCAGCATTACGAGCCATTGAATCAGTTTTGAAAGCGGAAAAATCAATAAAATCAGTTATTGATATGGATACGGATGCGAAACGTGAGAAATCAACTGATGCTTTAATCAATGAGATGAAGCAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTATTGCCGAAATGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TGAGCAACTTTGAGATGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>402</pcr_amplicon_size>
		<canonical_amplicon>AATTATTGCCGAAATGAGAATTGGGCATTTCGAAACATCTTATCTCGTTTTGTTAAAATTTCTAAAAAGTTGGAAACTACAAAATTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAACTGAAAAATTCTGGACCATTTTTGTAGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCAAGAGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAAATTAAAGCTCTTATTTTATTTTGAATTTTCTGAAGTTTTCAAAAAAAAATTGAAAATTTCTGAACCACTTTCATTGAAAATTTGTAAAATTAAAAATATAAATTTTCAGAACGCCACCGATTTCATCTCAAAGTTGCTCA</canonical_amplicon>
		<polymorphic_amplicon>AATTATTGCCGAAATGAGAATTGGGCATTTCGAAACATCTTATCTCGTTTTGTTAAAATTTCTAAAAAGTTGGAAACTACAAAATTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAACTGAAAAATTCTGGACCATTTTTGTMGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCAAGAGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAAATTAAAGCTCTTATTTTATTTTGAATTTTCTGAAGTTTTCAAAAAAAAATTGAAAATTTCTGAACCACTTTCATTGAAAATTTGTAAAATTAAAAATATAAATTTTCAGAACGCCACCGATTTCATCTCAAAGTTGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27160</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>228894</contig_pos>
        <strand></strand>
        <context>caacaacaaa[A/C]ttaaagctct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAA</left_flank>
        <right_flank>TTAAAGCTCTTATTTTATTTTGAATTTTCTGAAGTTTTCAAAAAAAAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTCCTAAAAAAGTCCCGAAAATTGCTAAAATTATTGCCGAAATGAGAATTGGGCATTTCGAAACATCTTATCTCGTTTTGTTAAAATTTCTAAAAAGTTGGAAACTACAAAATTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAACTGAAAAATTCTGGACCATTTTTGTAGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCAAGAGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAAATTAAAGCTCTTATTTTATTTTGAATTTTCTGAAGTTTTCAAAAAAAAATTGAAAATTTCTGAACCACTTTCATTGAAAATTTGTAAAATTAAAAATATAAATTTTCAGAACGCCACCGATTTCATCTCAAAGTTGCTCAAAATCCGAAAAAGTTTCCAAGAAGTTATTAAGAAAGTGAAGAATGCGACAGTGCCCAAGGAATCCCAGAAATTGATGGATTCAAACCATTTCAAAGAAGTAGGAATTCATTCAAAAGTGATCGGAGGAAGTGTGGCAGCATTACGAGCCATTGAATCAGTTTTGAAAGCGGAAAAATCAATAAAATCAGTTATTGATATGGATACGGATGCGAAACGTGAGAAATCAACTGATGCTTTAATCAATGAGATGAAGCAAGCTGAAACTTCAATTGGAGAGATTCTGAAAGTCATGAAGACAAATAACATTCGTTCGATTTCTCAAATTCAATCAATTTTAATCTCCTTGTCACAACTGAAAAA</canonical>
            <polymorphic>TCAACGTTATCAAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTCCTAAAAAAGTCCCGAAAATTGCTAAAATTATTGCCGAAATGAGAATTGGGCATTTCGAAACATCTTATCTCGTTTTGTTAAAATTTCTAAAAAGTTGGAAACTACAAAATTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAACTGAAAAATTCTGGACCATTTTTGTAGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCAAGAGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAAMTTAAAGCTCTTATTTTATTTTGAATTTTCTGAAGTTTTCAAAAAAAAATTGAAAATTTCTGAACCACTTTCATTGAAAATTTGTAAAATTAAAAATATAAATTTTCAGAACGCCACCGATTTCATCTCAAAGTTGCTCAAAATCCGAAAAAGTTTCCAAGAAGTTATTAAGAAAGTGAAGAATGCGACAGTGCCCAAGGAATCCCAGAAATTGATGGATTCAAACCATTTCAAAGAAGTAGGAATTCATTCAAAAGTGATCGGAGGAAGTGTGGCAGCATTACGAGCCATTGAATCAGTTTTGAAAGCGGAAAAATCAATAAAATCAGTTATTGATATGGATACGGATGCGAAACGTGAGAAATCAACTGATGCTTTAATCAATGAGATGAAGCAAGCTGAAACTTCAATTGGAGAGATTCTGAAAGTCATGAAGACAAATAACATTCGTTCGATTTCTCAAATTCAATCAATTTTAATCTCCTTGTCACAACTGAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>165 109 86 83 59 54 43 38 38 34 30 29 29 26 24 24 24 20 20 18 13 9 9 9 7</canonical_bands>
                <polymorphic_bands>165 109 86 83 59 54 53 43 38 38 34 30 29 26 24 24 20 20 18 13 9 9 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTATTGCCGAAATGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TGAGCAACTTTGAGATGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>402</pcr_amplicon_size>
		<canonical_amplicon>AATTATTGCCGAAATGAGAATTGGGCATTTCGAAACATCTTATCTCGTTTTGTTAAAATTTCTAAAAAGTTGGAAACTACAAAATTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAACTGAAAAATTCTGGACCATTTTTGTAGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCAAGAGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAAATTAAAGCTCTTATTTTATTTTGAATTTTCTGAAGTTTTCAAAAAAAAATTGAAAATTTCTGAACCACTTTCATTGAAAATTTGTAAAATTAAAAATATAAATTTTCAGAACGCCACCGATTTCATCTCAAAGTTGCTCA</canonical_amplicon>
		<polymorphic_amplicon>AATTATTGCCGAAATGAGAATTGGGCATTTCGAAACATCTTATCTCGTTTTGTTAAAATTTCTAAAAAGTTGGAAACTACAAAATTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAACTGAAAAATTCTGGACCATTTTTGTAGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCAAGAGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAAMTTAAAGCTCTTATTTTATTTTGAATTTTCTGAAGTTTTCAAAAAAAAATTGAAAATTTCTGAACCACTTTCATTGAAAATTTGTAAAATTAAAAATATAAATTTTCAGAACGCCACCGATTTCATCTCAAAGTTGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27161</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>228905</contig_pos>
        <strand></strand>
        <context>ttaaagctct[T/A]wttttatttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAAATTAAAGCTCT</left_flank>
        <right_flank>ATTTTATTTTGAATTTTCTGAAGTTTTCAAAAAAAAATTGAAAATTTCTG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTCCTAAAAAAGTCCCGAAAATTGCTAAAATTATTGCCGAAATGAGAATTGGGCATTTCGAAACATCTTATCTCGTTTTGTTAAAATTTCTAAAAAGTTGGAAACTACAAAATTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAACTGAAAAATTCTGGACCATTTTTGTAGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCAAGAGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAAATTAAAGCTCTTATTTTATTTTGAATTTTCTGAAGTTTTCAAAAAAAAATTGAAAATTTCTGAACCACTTTCATTGAAAATTTGTAAAATTAAAAATATAAATTTTCAGAACGCCACCGATTTCATCTCAAAGTTGCTCAAAATCCGAAAAAGTTTCCAAGAAGTTATTAAGAAAGTGAAGAATGCGACAGTGCCCAAGGAATCCCAGAAATTGATGGATTCAAACCATTTCAAAGAAGTAGGAATTCATTCAAAAGTGATCGGAGGAAGTGTGGCAGCATTACGAGCCATTGAATCAGTTTTGAAAGCGGAAAAATCAATAAAATCAGTTATTGATATGGATACGGATGCGAAACGTGAGAAATCAACTGATGCTTTAATCAATGAGATGAAGCAAGCTGAAACTTCAATTGGAGAGATTCTGAAAGTCATGAAGACAAATAACATTCGTTCGATTTCTCAAATTCAATCAATTTTAATCTCCTTGTCACAACTGAAAAATCAAACTGACA</canonical>
            <polymorphic>AAAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTCCTAAAAAAGTCCCGAAAATTGCTAAAATTATTGCCGAAATGAGAATTGGGCATTTCGAAACATCTTATCTCGTTTTGTTAAAATTTCTAAAAAGTTGGAAACTACAAAATTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAACTGAAAAATTCTGGACCATTTTTGTAGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCAAGAGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAAATTAAAGCTCTWATTTTATTTTGAATTTTCTGAAGTTTTCAAAAAAAAATTGAAAATTTCTGAACCACTTTCATTGAAAATTTGTAAAATTAAAAATATAAATTTTCAGAACGCCACCGATTTCATCTCAAAGTTGCTCAAAATCCGAAAAAGTTTCCAAGAAGTTATTAAGAAAGTGAAGAATGCGACAGTGCCCAAGGAATCCCAGAAATTGATGGATTCAAACCATTTCAAAGAAGTAGGAATTCATTCAAAAGTGATCGGAGGAAGTGTGGCAGCATTACGAGCCATTGAATCAGTTTTGAAAGCGGAAAAATCAATAAAATCAGTTATTGATATGGATACGGATGCGAAACGTGAGAAATCAACTGATGCTTTAATCAATGAGATGAAGCAAGCTGAAACTTCAATTGGAGAGATTCTGAAAGTCATGAAGACAAATAACATTCGTTCGATTTCTCAAATTCAATCAATTTTAATCTCCTTGTCACAACTGAAAAATCAAACTGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTATTGCCGAAATGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TGAGCAACTTTGAGATGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>402</pcr_amplicon_size>
		<canonical_amplicon>AATTATTGCCGAAATGAGAATTGGGCATTTCGAAACATCTTATCTCGTTTTGTTAAAATTTCTAAAAAGTTGGAAACTACAAAATTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAACTGAAAAATTCTGGACCATTTTTGTAGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCAAGAGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAAATTAAAGCTCTTATTTTATTTTGAATTTTCTGAAGTTTTCAAAAAAAAATTGAAAATTTCTGAACCACTTTCATTGAAAATTTGTAAAATTAAAAATATAAATTTTCAGAACGCCACCGATTTCATCTCAAAGTTGCTCA</canonical_amplicon>
		<polymorphic_amplicon>AATTATTGCCGAAATGAGAATTGGGCATTTCGAAACATCTTATCTCGTTTTGTTAAAATTTCTAAAAAGTTGGAAACTACAAAATTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAACTGAAAAATTCTGGACCATTTTTGTAGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCAAGAGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAAATTAAAGCTCTWATTTTATTTTGAATTTTCTGAAGTTTTCAAAAAAAAATTGAAAATTTCTGAACCACTTTCATTGAAAATTTGTAAAATTAAAAATATAAATTTTCAGAACGCCACCGATTTCATCTCAAAGTTGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27162</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>228906</contig_pos>
        <strand></strand>
        <context>taaagctctw[A/T]ttttattttg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAAATTAAAGCTCTT</left_flank>
        <right_flank>TTTTATTTTGAATTTTCTGAAGTTTTCAAAAAAAAATTGAAAATTTCTGA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTCCTAAAAAAGTCCCGAAAATTGCTAAAATTATTGCCGAAATGAGAATTGGGCATTTCGAAACATCTTATCTCGTTTTGTTAAAATTTCTAAAAAGTTGGAAACTACAAAATTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAACTGAAAAATTCTGGACCATTTTTGTAGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCAAGAGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAAATTAAAGCTCTTATTTTATTTTGAATTTTCTGAAGTTTTCAAAAAAAAATTGAAAATTTCTGAACCACTTTCATTGAAAATTTGTAAAATTAAAAATATAAATTTTCAGAACGCCACCGATTTCATCTCAAAGTTGCTCAAAATCCGAAAAAGTTTCCAAGAAGTTATTAAGAAAGTGAAGAATGCGACAGTGCCCAAGGAATCCCAGAAATTGATGGATTCAAACCATTTCAAAGAAGTAGGAATTCATTCAAAAGTGATCGGAGGAAGTGTGGCAGCATTACGAGCCATTGAATCAGTTTTGAAAGCGGAAAAATCAATAAAATCAGTTATTGATATGGATACGGATGCGAAACGTGAGAAATCAACTGATGCTTTAATCAATGAGATGAAGCAAGCTGAAACTTCAATTGGAGAGATTCTGAAAGTCATGAAGACAAATAACATTCGTTCGATTTCTCAAATTCAATCAATTTTAATCTCCTTGTCACAACTGAAAAATCAAACTGACAT</canonical>
            <polymorphic>AAACGGTTTCAAAAGTTTTCGGAGGAACAAATGTGGATAGTTCTCTGAATTGCATCCAGAATAAGTCTGTTAATAATCTAAAGGAAATGTTCGGATTTCTTGATCAATCGGATAGTTTGATGAATCAGAAAATTGAGTTTACGGTTAGTTTTTCTTTTTCACTTTTTCAATATTTTAAAAGAAACCAGAACTTTGAAGTCCTAAAAAAGTCCCGAAAATTGCTAAAATTATTGCCGAAATGAGAATTGGGCATTTCGAAACATCTTATCTCGTTTTGTTAAAATTTCTAAAAAGTTGGAAACTACAAAATTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAACTGAAAAATTCTGGACCATTTTTGTAGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCAAGAGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAAATTAAAGCTCTTWTTTTATTTTGAATTTTCTGAAGTTTTCAAAAAAAAATTGAAAATTTCTGAACCACTTTCATTGAAAATTTGTAAAATTAAAAATATAAATTTTCAGAACGCCACCGATTTCATCTCAAAGTTGCTCAAAATCCGAAAAAGTTTCCAAGAAGTTATTAAGAAAGTGAAGAATGCGACAGTGCCCAAGGAATCCCAGAAATTGATGGATTCAAACCATTTCAAAGAAGTAGGAATTCATTCAAAAGTGATCGGAGGAAGTGTGGCAGCATTACGAGCCATTGAATCAGTTTTGAAAGCGGAAAAATCAATAAAATCAGTTATTGATATGGATACGGATGCGAAACGTGAGAAATCAACTGATGCTTTAATCAATGAGATGAAGCAAGCTGAAACTTCAATTGGAGAGATTCTGAAAGTCATGAAGACAAATAACATTCGTTCGATTTCTCAAATTCAATCAATTTTAATCTCCTTGTCACAACTGAAAAATCAAACTGACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTATTGCCGAAATGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TGAGCAACTTTGAGATGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>402</pcr_amplicon_size>
		<canonical_amplicon>AATTATTGCCGAAATGAGAATTGGGCATTTCGAAACATCTTATCTCGTTTTGTTAAAATTTCTAAAAAGTTGGAAACTACAAAATTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAACTGAAAAATTCTGGACCATTTTTGTAGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCAAGAGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAAATTAAAGCTCTTATTTTATTTTGAATTTTCTGAAGTTTTCAAAAAAAAATTGAAAATTTCTGAACCACTTTCATTGAAAATTTGTAAAATTAAAAATATAAATTTTCAGAACGCCACCGATTTCATCTCAAAGTTGCTCA</canonical_amplicon>
		<polymorphic_amplicon>AATTATTGCCGAAATGAGAATTGGGCATTTCGAAACATCTTATCTCGTTTTGTTAAAATTTCTAAAAAGTTGGAAACTACAAAATTAAAACTCTATTTTTGTTTAGTAAACCTATTCTAAAATTTTCAGACAAACTGAAAAATTCTGGACCATTTTTGTAGATCTTCAAAATTGACTTTTTTTTACCAAAATTTGTCTCAGTTGGTTTCAAGAGGCATTTCTCTTTTGGATGAATTTCTACAAAAAAGTTGTCAACAACAAAATTAAAGCTCTTWTTTTATTTTGAATTTTCTGAAGTTTTCAAAAAAAAATTGAAAATTTCTGAACCACTTTCATTGAAAATTTGTAAAATTAAAAATATAAATTTTCAGAACGCCACCGATTTCATCTCAAAGTTGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27163</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>230773</contig_pos>
        <strand></strand>
        <context>ttaaGAAAAT[A/T]TTTTTTGTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CACATTTTGATGCAATAAAAAAGTTCACCGTACACCACCTTTAAGAAAAT</left_flank>
        <right_flank>TTTTTTGTGAAATAATAAAAATTTCTAGAGATTGGTTTAAAGATGGATAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAACGAAAAGCAGATGGAAAATCCCAAGAAAGTAAAAAAAATGGACAAATGGTTCAAATAAATAACATTTTAATTGCATTTTAATTGTTCTTTTATTTTTATTTTATTTGTAATTACCTTCTTTTAATTGTTTGTTCAAACTTATCTGCTCTATTTGATATAAAAATAAAACCTGAAAAAAAAGCAAATCGATAAAAATCCAGAAAGGAAAATTGAAGAACAATAATTAAAGGTGGTGTACGGTGAACTTTTTTGTTGCATCAAAATGTGCAGAAATGTTTGTAGATTGACTTAAAAATTCAAAAAAGGNNNNNNNNNNCTCACCGGGCGGCCTATAAAAAACCTCGTCCCTAAGGGCTTTCATCGTATTTTTCGATGCGTTTTTCTCGATGAAGAAATTTTTTTGAATGTTTTCTTTATTTTTATGTCGATCTACATGCATTTCTGCACATTTTGATGCAATAAAAAAGTTCACCGTACACCACCTTTAAGAAAATATTTTTTGTGAAATAATAAAAATTTCTAGAGATTGGTTTAAAGATGGATATCTGTTTTCAATGAACTTTCACAAAAAAGTTGTCAACTACAAAATTAAAGCTCTATTTTTGTTTCGTATCTTCTGAAAATTTCAGACAAATTGAAAAATTCTGAATCACAGGAGCTCAAAAACAAAATTTTTTCACGGTGTCCTCGCTTATCGTCATTGGAACTACATATACTGGTTGGGTTACTGTAGTTGGTGGGGATACTGTAGGGTTTCGGAAGGAAATTTTAGAAAATTTAGAAAAAAAGTTTTTTTTTCGTCAGAAATTTAGGATTTACTGAAAATCTAGTAAAAGTTTAACTTTTGTGAAAAATCTCAAAATCTCCGAATCTCAGAATCCCCGAATCTCAAAATTTCGGAATTTCAGAATGTTAGAATTTTGGATTCTCAGGATTTTAGAATCTCCGAATCTCACTATCAGAATATTGGAATCTCAGAAAACATGCATTTAAAT</canonical>
            <polymorphic>AAAAACGAAAAGCAGATGGAAAATCCCAAGAAAGTAAAAAAAATGGACAAATGGTTCAAATAAATAACATTTTAATTGCATTTTAATTGTTCTTTTATTTTTATTTTATTTGTAATTACCTTCTTTTAATTGTTTGTTCAAACTTATCTGCTCTATTTGATATAAAAATAAAACCTGAAAAAAAAGCAAATCGATAAAAATCCAGAAAGGAAAATTGAAGAACAATAATTAAAGGTGGTGTACGGTGAACTTTTTTGTTGCATCAAAATGTGCAGAAATGTTTGTAGATTGACTTAAAAATTCAAAAAAGGNNNNNNNNNNCTCACCGGGCGGCCTATAAAAAACCTCGTCCCTAAGGGCTTTCATCGTATTTTTCGATGCGTTTTTCTCGATGAAGAAATTTTTTTGAATGTTTTCTTTATTTTTATGTCGATCTACATGCATTTCTGCACATTTTGATGCAATAAAAAAGTTCACCGTACACCACCTTTAAGAAAATWTTTTTTGTGAAATAATAAAAATTTCTAGAGATTGGTTTAAAGATGGATATCTGTTTTCAATGAACTTTCACAAAAAAGTTGTCAACTACAAAATTAAAGCTCTATTTTTGTTTCGTATCTTCTGAAAATTTCAGACAAATTGAAAAATTCTGAATCACAGGAGCTCAAAAACAAAATTTTTTCACGGTGTCCTCGCTTATCGTCATTGGAACTACATATACTGGTTGGGTTACTGTAGTTGGTGGGGATACTGTAGGGTTTCGGAAGGAAATTTTAGAAAATTTAGAAAAAAAGTTTTTTTTTCGTCAGAAATTTAGGATTTACTGAAAATCTAGTAAAAGTTTAACTTTTGTGAAAAATCTCAAAATCTCCGAATCTCAGAATCCCCGAATCTCAAAATTTCGGAATTTCAGAATGTTAGAATTTTGGATTCTCAGGATTTTAGAATCTCCGAATCTCACTATCAGAATATTGGAATCTCAGAAAACATGCATTTAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 471 30</canonical_bands>
                <polymorphic_bands>970 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAAGGAAAATTGAAGAACAAT</pcr_primer_p1>
		<pcr_primer_p2>ATATGTAGTTCCAATGACGATAAG</pcr_primer_p2>
		<pcr_amplicon_size>516</pcr_amplicon_size>
		<canonical_amplicon>AGAAAGGAAAATTGAAGAACAATAATTAAAGGTGGTGTACGGTGAACTTTTTTGTTGCATCAAAATGTGCAGAAATGTTTGTAGATTGACTTAAAAATTCAAAAAAGGNNNNNNNNNNCTCACCGGGCGGCCTATAAAAAACCTCGTCCCTAAGGGCTTTCATCGTATTTTTCGATGCGTTTTTCTCGATGAAGAAATTTTTTTGAATGTTTTCTTTATTTTTATGTCGATCTACATGCATTTCTGCACATTTTGATGCAATAAAAAAGTTCACCGTACACCACCTTTAAGAAAATATTTTTTGTGAAATAATAAAAATTTCTAGAGATTGGTTTAAAGATGGATATCTGTTTTCAATGAACTTTCACAAAAAAGTTGTCAACTACAAAATTAAAGCTCTATTTTTGTTTCGTATCTTCTGAAAATTTCAGACAAATTGAAAAATTCTGAATCACAGGAGCTCAAAAACAAAATTTTTTCACGGTGTCCTCGCTTATCGTCATTGGAACTACATAT</canonical_amplicon>
		<polymorphic_amplicon>AGAAAGGAAAATTGAAGAACAATAATTAAAGGTGGTGTACGGTGAACTTTTTTGTTGCATCAAAATGTGCAGAAATGTTTGTAGATTGACTTAAAAATTCAAAAAAGGNNNNNNNNNNCTCACCGGGCGGCCTATAAAAAACCTCGTCCCTAAGGGCTTTCATCGTATTTTTCGATGCGTTTTTCTCGATGAAGAAATTTTTTTGAATGTTTTCTTTATTTTTATGTCGATCTACATGCATTTCTGCACATTTTGATGCAATAAAAAAGTTCACCGTACACCACCTTTAAGAAAATWTTTTTTGTGAAATAATAAAAATTTCTAGAGATTGGTTTAAAGATGGATATCTGTTTTCAATGAACTTTCACAAAAAAGTTGTCAACTACAAAATTAAAGCTCTATTTTTGTTTCGTATCTTCTGAAAATTTCAGACAAATTGAAAAATTCTGAATCACAGGAGCTCAAAAACAAAATTTTTTCACGGTGTCCTCGCTTATCGTCATTGGAACTACATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27164</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>230901</contig_pos>
        <strand></strand>
        <context>tcttctgaaa[A/G]tttcagacaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTGTCAACTACAAAATTAAAGCTCTATTTTTGTTTCGTATCTTCTGAAA</left_flank>
        <right_flank>TTTCAGACAAATTGAAAAATTCTGAATCACAGGAGCTCAAAAACAAAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGTTTGTTCAAACTTATCTGCTCTATTTGATATAAAAATAAAACCTGAAAAAAAAGCAAATCGATAAAAATCCAGAAAGGAAAATTGAAGAACAATAATTAAAGGTGGTGTACGGTGAACTTTTTTGTTGCATCAAAATGTGCAGAAATGTTTGTAGATTGACTTAAAAATTCAAAAAAGGNNNNNNNNNNCTCACCGGGCGGCCTATAAAAAACCTCGTCCCTAAGGGCTTTCATCGTATTTTTCGATGCGTTTTTCTCGATGAAGAAATTTTTTTGAATGTTTTCTTTATTTTTATGTCGATCTACATGCATTTCTGCACATTTTGATGCAATAAAAAAGTTCACCGTACACCACCTTTAAGAAAATATTTTTTGTGAAATAATAAAAATTTCTAGAGATTGGTTTAAAGATGGATATCTGTTTTCAATGAACTTTCACAAAAAAGTTGTCAACTACAAAATTAAAGCTCTATTTTTGTTTCGTATCTTCTGAAAATTTCAGACAAATTGAAAAATTCTGAATCACAGGAGCTCAAAAACAAAATTTTTTCACGGTGTCCTCGCTTATCGTCATTGGAACTACATATACTGGTTGGGTTACTGTAGTTGGTGGGGATACTGTAGGGTTTCGGAAGGAAATTTTAGAAAATTTAGAAAAAAAGTTTTTTTTTCGTCAGAAATTTAGGATTTACTGAAAATCTAGTAAAAGTTTAACTTTTGTGAAAAATCTCAAAATCTCCGAATCTCAGAATCCCCGAATCTCAAAATTTCGGAATTTCAGAATGTTAGAATTTTGGATTCTCAGGATTTTAGAATCTCCGAATCTCACTATCAGAATATTGGAATCTCAGAAAACATGCATTTAAATATATTTTTTCATCAAAACGAAAATAGTATATTTACGTCGGATTACTGTAGTTTCTGTTTCTGAGATTCTAATATTCCAAGATTCTGAGACTCTGAAAACGAGATTCGAAGATTCTGAGATTCCAAGAT</canonical>
            <polymorphic>ATTGTTTGTTCAAACTTATCTGCTCTATTTGATATAAAAATAAAACCTGAAAAAAAAGCAAATCGATAAAAATCCAGAAAGGAAAATTGAAGAACAATAATTAAAGGTGGTGTACGGTGAACTTTTTTGTTGCATCAAAATGTGCAGAAATGTTTGTAGATTGACTTAAAAATTCAAAAAAGGNNNNNNNNNNCTCACCGGGCGGCCTATAAAAAACCTCGTCCCTAAGGGCTTTCATCGTATTTTTCGATGCGTTTTTCTCGATGAAGAAATTTTTTTGAATGTTTTCTTTATTTTTATGTCGATCTACATGCATTTCTGCACATTTTGATGCAATAAAAAAGTTCACCGTACACCACCTTTAAGAAAATATTTTTTGTGAAATAATAAAAATTTCTAGAGATTGGTTTAAAGATGGATATCTGTTTTCAATGAACTTTCACAAAAAAGTTGTCAACTACAAAATTAAAGCTCTATTTTTGTTTCGTATCTTCTGAAARTTTCAGACAAATTGAAAAATTCTGAATCACAGGAGCTCAAAAACAAAATTTTTTCACGGTGTCCTCGCTTATCGTCATTGGAACTACATATACTGGTTGGGTTACTGTAGTTGGTGGGGATACTGTAGGGTTTCGGAAGGAAATTTTAGAAAATTTAGAAAAAAAGTTTTTTTTTCGTCAGAAATTTAGGATTTACTGAAAATCTAGTAAAAGTTTAACTTTTGTGAAAAATCTCAAAATCTCCGAATCTCAGAATCCCCGAATCTCAAAATTTCGGAATTTCAGAATGTTAGAATTTTGGATTCTCAGGATTTTAGAATCTCCGAATCTCACTATCAGAATATTGGAATCTCAGAAAACATGCATTTAAATATATTTTTTCATCAAAACGAAAATAGTATATTTACGTCGGATTACTGTAGTTTCTGTTTCTGAGATTCTAATATTCCAAGATTCTGAGACTCTGAAAACGAGATTCGAAGATTCTGAGATTCCAAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>207 170 121 107 100 95 87 31 29 19 16 10 8</canonical_bands>
                <polymorphic_bands>207 170 126 121 100 95 87 31 29 16 10 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>207 121 100 95 87 84 72 72 35 31 29 16 14 11 10 8 8</canonical_bands>
                <polymorphic_bands>207 121 100 95 87 84 72 72 46 31 29 16 14 10 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAAGGAAAATTGAAGAACAAT</pcr_primer_p1>
		<pcr_primer_p2>ATATGTAGTTCCAATGACGATAAG</pcr_primer_p2>
		<pcr_amplicon_size>516</pcr_amplicon_size>
		<canonical_amplicon>AGAAAGGAAAATTGAAGAACAATAATTAAAGGTGGTGTACGGTGAACTTTTTTGTTGCATCAAAATGTGCAGAAATGTTTGTAGATTGACTTAAAAATTCAAAAAAGGNNNNNNNNNNCTCACCGGGCGGCCTATAAAAAACCTCGTCCCTAAGGGCTTTCATCGTATTTTTCGATGCGTTTTTCTCGATGAAGAAATTTTTTTGAATGTTTTCTTTATTTTTATGTCGATCTACATGCATTTCTGCACATTTTGATGCAATAAAAAAGTTCACCGTACACCACCTTTAAGAAAATATTTTTTGTGAAATAATAAAAATTTCTAGAGATTGGTTTAAAGATGGATATCTGTTTTCAATGAACTTTCACAAAAAAGTTGTCAACTACAAAATTAAAGCTCTATTTTTGTTTCGTATCTTCTGAAAATTTCAGACAAATTGAAAAATTCTGAATCACAGGAGCTCAAAAACAAAATTTTTTCACGGTGTCCTCGCTTATCGTCATTGGAACTACATAT</canonical_amplicon>
		<polymorphic_amplicon>AGAAAGGAAAATTGAAGAACAATAATTAAAGGTGGTGTACGGTGAACTTTTTTGTTGCATCAAAATGTGCAGAAATGTTTGTAGATTGACTTAAAAATTCAAAAAAGGNNNNNNNNNNCTCACCGGGCGGCCTATAAAAAACCTCGTCCCTAAGGGCTTTCATCGTATTTTTCGATGCGTTTTTCTCGATGAAGAAATTTTTTTGAATGTTTTCTTTATTTTTATGTCGATCTACATGCATTTCTGCACATTTTGATGCAATAAAAAAGTTCACCGTACACCACCTTTAAGAAAATATTTTTTGTGAAATAATAAAAATTTCTAGAGATTGGTTTAAAGATGGATATCTGTTTTCAATGAACTTTCACAAAAAAGTTGTCAACTACAAAATTAAAGCTCTATTTTTGTTTCGTATCTTCTGAAARTTTCAGACAAATTGAAAAATTCTGAATCACAGGAGCTCAAAAACAAAATTTTTTCACGGTGTCCTCGCTTATCGTCATTGGAACTACATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27165</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>230946</contig_pos>
        <strand></strand>
        <context>GCTCAAAAAC[A/T]AAATTTTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAAAATTTCAGACAAATTGAAAAATTCTGAATCACAGGAGCTCAAAAAC</left_flank>
        <right_flank>AAATTTTTTCACGGTGTCCTCGCTTATCGTCATTGGAACTACATATACTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGAAAAAAAAGCAAATCGATAAAAATCCAGAAAGGAAAATTGAAGAACAATAATTAAAGGTGGTGTACGGTGAACTTTTTTGTTGCATCAAAATGTGCAGAAATGTTTGTAGATTGACTTAAAAATTCAAAAAAGGNNNNNNNNNNCTCACCGGGCGGCCTATAAAAAACCTCGTCCCTAAGGGCTTTCATCGTATTTTTCGATGCGTTTTTCTCGATGAAGAAATTTTTTTGAATGTTTTCTTTATTTTTATGTCGATCTACATGCATTTCTGCACATTTTGATGCAATAAAAAAGTTCACCGTACACCACCTTTAAGAAAATATTTTTTGTGAAATAATAAAAATTTCTAGAGATTGGTTTAAAGATGGATATCTGTTTTCAATGAACTTTCACAAAAAAGTTGTCAACTACAAAATTAAAGCTCTATTTTTGTTTCGTATCTTCTGAAAATTTCAGACAAATTGAAAAATTCTGAATCACAGGAGCTCAAAAACAAAATTTTTTCACGGTGTCCTCGCTTATCGTCATTGGAACTACATATACTGGTTGGGTTACTGTAGTTGGTGGGGATACTGTAGGGTTTCGGAAGGAAATTTTAGAAAATTTAGAAAAAAAGTTTTTTTTTCGTCAGAAATTTAGGATTTACTGAAAATCTAGTAAAAGTTTAACTTTTGTGAAAAATCTCAAAATCTCCGAATCTCAGAATCCCCGAATCTCAAAATTTCGGAATTTCAGAATGTTAGAATTTTGGATTCTCAGGATTTTAGAATCTCCGAATCTCACTATCAGAATATTGGAATCTCAGAAAACATGCATTTAAATATATTTTTTCATCAAAACGAAAATAGTATATTTACGTCGGATTACTGTAGTTTCTGTTTCTGAGATTCTAATATTCCAAGATTCTGAGACTCTGAAAACGAGATTCGAAGATTCTGAGATTCCAAGATTCTGAGAGTATGAGATTCCGAAATTCTCAGATTCGGGGATTTCGA</canonical>
            <polymorphic>CCTGAAAAAAAAGCAAATCGATAAAAATCCAGAAAGGAAAATTGAAGAACAATAATTAAAGGTGGTGTACGGTGAACTTTTTTGTTGCATCAAAATGTGCAGAAATGTTTGTAGATTGACTTAAAAATTCAAAAAAGGNNNNNNNNNNCTCACCGGGCGGCCTATAAAAAACCTCGTCCCTAAGGGCTTTCATCGTATTTTTCGATGCGTTTTTCTCGATGAAGAAATTTTTTTGAATGTTTTCTTTATTTTTATGTCGATCTACATGCATTTCTGCACATTTTGATGCAATAAAAAAGTTCACCGTACACCACCTTTAAGAAAATATTTTTTGTGAAATAATAAAAATTTCTAGAGATTGGTTTAAAGATGGATATCTGTTTTCAATGAACTTTCACAAAAAAGTTGTCAACTACAAAATTAAAGCTCTATTTTTGTTTCGTATCTTCTGAAAATTTCAGACAAATTGAAAAATTCTGAATCACAGGAGCTCAAAAACWAAATTTTTTCACGGTGTCCTCGCTTATCGTCATTGGAACTACATATACTGGTTGGGTTACTGTAGTTGGTGGGGATACTGTAGGGTTTCGGAAGGAAATTTTAGAAAATTTAGAAAAAAAGTTTTTTTTTCGTCAGAAATTTAGGATTTACTGAAAATCTAGTAAAAGTTTAACTTTTGTGAAAAATCTCAAAATCTCCGAATCTCAGAATCCCCGAATCTCAAAATTTCGGAATTTCAGAATGTTAGAATTTTGGATTCTCAGGATTTTAGAATCTCCGAATCTCACTATCAGAATATTGGAATCTCAGAAAACATGCATTTAAATATATTTTTTCATCAAAACGAAAATAGTATATTTACGTCGGATTACTGTAGTTTCTGTTTCTGAGATTCTAATATTCCAAGATTCTGAGACTCTGAAAACGAGATTCGAAGATTCTGAGATTCCAAGATTCTGAGAGTATGAGATTCCGAAATTCTCAGATTCGGGGATTTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAGGAAAATTGAAGAACAAT</pcr_primer_p1>
		<pcr_primer_p2>CCCAACCAGTATATGTAGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>526</pcr_amplicon_size>
		<canonical_amplicon>AGAAAGGAAAATTGAAGAACAATAATTAAAGGTGGTGTACGGTGAACTTTTTTGTTGCATCAAAATGTGCAGAAATGTTTGTAGATTGACTTAAAAATTCAAAAAAGGNNNNNNNNNNCTCACCGGGCGGCCTATAAAAAACCTCGTCCCTAAGGGCTTTCATCGTATTTTTCGATGCGTTTTTCTCGATGAAGAAATTTTTTTGAATGTTTTCTTTATTTTTATGTCGATCTACATGCATTTCTGCACATTTTGATGCAATAAAAAAGTTCACCGTACACCACCTTTAAGAAAATATTTTTTGTGAAATAATAAAAATTTCTAGAGATTGGTTTAAAGATGGATATCTGTTTTCAATGAACTTTCACAAAAAAGTTGTCAACTACAAAATTAAAGCTCTATTTTTGTTTCGTATCTTCTGAAAATTTCAGACAAATTGAAAAATTCTGAATCACAGGAGCTCAAAAACAAAATTTTTTCACGGTGTCCTCGCTTATCGTCATTGGAACTACATATACTGGTTGGG</canonical_amplicon>
		<polymorphic_amplicon>AGAAAGGAAAATTGAAGAACAATAATTAAAGGTGGTGTACGGTGAACTTTTTTGTTGCATCAAAATGTGCAGAAATGTTTGTAGATTGACTTAAAAATTCAAAAAAGGNNNNNNNNNNCTCACCGGGCGGCCTATAAAAAACCTCGTCCCTAAGGGCTTTCATCGTATTTTTCGATGCGTTTTTCTCGATGAAGAAATTTTTTTGAATGTTTTCTTTATTTTTATGTCGATCTACATGCATTTCTGCACATTTTGATGCAATAAAAAAGTTCACCGTACACCACCTTTAAGAAAATATTTTTTGTGAAATAATAAAAATTTCTAGAGATTGGTTTAAAGATGGATATCTGTTTTCAATGAACTTTCACAAAAAAGTTGTCAACTACAAAATTAAAGCTCTATTTTTGTTTCGTATCTTCTGAAAATTTCAGACAAATTGAAAAATTCTGAATCACAGGAGCTCAAAAACWAAATTTTTTCACGGTGTCCTCGCTTATCGTCATTGGAACTACATATACTGGTTGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27166</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>231007</contig_pos>
        <strand></strand>
        <context>GTTGGGTTAC[T/A]GTAGTTGGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ACGGTGTCCTCGCTTATCGTCATTGGAACTACATATACTGGTTGGGTTAC</left_flank>
        <right_flank>GTAGTTGGTGGGGATACTGTAGGGTTTCGGAAGGAAATTTTAGAAAATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGGTGTACGGTGAACTTTTTTGTTGCATCAAAATGTGCAGAAATGTTTGTAGATTGACTTAAAAATTCAAAAAAGGNNNNNNNNNNCTCACCGGGCGGCCTATAAAAAACCTCGTCCCTAAGGGCTTTCATCGTATTTTTCGATGCGTTTTTCTCGATGAAGAAATTTTTTTGAATGTTTTCTTTATTTTTATGTCGATCTACATGCATTTCTGCACATTTTGATGCAATAAAAAAGTTCACCGTACACCACCTTTAAGAAAATATTTTTTGTGAAATAATAAAAATTTCTAGAGATTGGTTTAAAGATGGATATCTGTTTTCAATGAACTTTCACAAAAAAGTTGTCAACTACAAAATTAAAGCTCTATTTTTGTTTCGTATCTTCTGAAAATTTCAGACAAATTGAAAAATTCTGAATCACAGGAGCTCAAAAACAAAATTTTTTCACGGTGTCCTCGCTTATCGTCATTGGAACTACATATACTGGTTGGGTTACTGTAGTTGGTGGGGATACTGTAGGGTTTCGGAAGGAAATTTTAGAAAATTTAGAAAAAAAGTTTTTTTTTCGTCAGAAATTTAGGATTTACTGAAAATCTAGTAAAAGTTTAACTTTTGTGAAAAATCTCAAAATCTCCGAATCTCAGAATCCCCGAATCTCAAAATTTCGGAATTTCAGAATGTTAGAATTTTGGATTCTCAGGATTTTAGAATCTCCGAATCTCACTATCAGAATATTGGAATCTCAGAAAACATGCATTTAAATATATTTTTTCATCAAAACGAAAATAGTATATTTACGTCGGATTACTGTAGTTTCTGTTTCTGAGATTCTAATATTCCAAGATTCTGAGACTCTGAAAACGAGATTCGAAGATTCTGAGATTCCAAGATTCTGAGAGTATGAGATTCCGAAATTCTCAGATTCGGGGATTTCGAGATTTTGAGATTTTGAAATTCCGAGATTCGGGGTATTTTGAGATTCGGAATTTCTAGAATC</canonical>
            <polymorphic>GTGGTGTACGGTGAACTTTTTTGTTGCATCAAAATGTGCAGAAATGTTTGTAGATTGACTTAAAAATTCAAAAAAGGNNNNNNNNNNCTCACCGGGCGGCCTATAAAAAACCTCGTCCCTAAGGGCTTTCATCGTATTTTTCGATGCGTTTTTCTCGATGAAGAAATTTTTTTGAATGTTTTCTTTATTTTTATGTCGATCTACATGCATTTCTGCACATTTTGATGCAATAAAAAAGTTCACCGTACACCACCTTTAAGAAAATATTTTTTGTGAAATAATAAAAATTTCTAGAGATTGGTTTAAAGATGGATATCTGTTTTCAATGAACTTTCACAAAAAAGTTGTCAACTACAAAATTAAAGCTCTATTTTTGTTTCGTATCTTCTGAAAATTTCAGACAAATTGAAAAATTCTGAATCACAGGAGCTCAAAAACAAAATTTTTTCACGGTGTCCTCGCTTATCGTCATTGGAACTACATATACTGGTTGGGTTACWGTAGTTGGTGGGGATACTGTAGGGTTTCGGAAGGAAATTTTAGAAAATTTAGAAAAAAAGTTTTTTTTTCGTCAGAAATTTAGGATTTACTGAAAATCTAGTAAAAGTTTAACTTTTGTGAAAAATCTCAAAATCTCCGAATCTCAGAATCCCCGAATCTCAAAATTTCGGAATTTCAGAATGTTAGAATTTTGGATTCTCAGGATTTTAGAATCTCCGAATCTCACTATCAGAATATTGGAATCTCAGAAAACATGCATTTAAATATATTTTTTCATCAAAACGAAAATAGTATATTTACGTCGGATTACTGTAGTTTCTGTTTCTGAGATTCTAATATTCCAAGATTCTGAGACTCTGAAAACGAGATTCGAAGATTCTGAGATTCCAAGATTCTGAGAGTATGAGATTCCGAAATTCTCAGATTCGGGGATTTCGAGATTTTGAGATTTTGAAATTCCGAGATTCGGGGTATTTTGAGATTCGGAATTTCTAGAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>499 294 189 18</canonical_bands>
                <polymorphic_bands>517 294 189</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAAGGAAAATTGAAGAACAAT</pcr_primer_p1>
		<pcr_primer_p2>ATCCTAAATTTCTGACGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>617</pcr_amplicon_size>
		<canonical_amplicon>CTGTAGTTGGTGGGGATACTGTAGGGTTTCGGAAGGAAATTTTAGAAAATTTAGAAAAAAAGTTTTTTTTTCGTCAGAAATTTAGGAT</canonical_amplicon>
		<polymorphic_amplicon>CWGTAGTTGGTGGGGATACTGTAGGGTTTCGGAAGGAAATTTTAGAAAATTTAGAAAAAAAGTTTTTTTTTCGTCAGAAATTTAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27167</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>231146</contig_pos>
        <strand></strand>
        <context>caaaatctcc[G/A]aatctcagaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACTGAAAATCTAGTAAAAGTTTAACTTTTGTGAAAAATCTCAAAATCTCC</left_flank>
        <right_flank>AATCTCAGAATCCCCGAATCTCAAAATTTCGGAATTTCAGAATGTTAGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGATGCGTTTTTCTCGATGAAGAAATTTTTTTGAATGTTTTCTTTATTTTTATGTCGATCTACATGCATTTCTGCACATTTTGATGCAATAAAAAAGTTCACCGTACACCACCTTTAAGAAAATATTTTTTGTGAAATAATAAAAATTTCTAGAGATTGGTTTAAAGATGGATATCTGTTTTCAATGAACTTTCACAAAAAAGTTGTCAACTACAAAATTAAAGCTCTATTTTTGTTTCGTATCTTCTGAAAATTTCAGACAAATTGAAAAATTCTGAATCACAGGAGCTCAAAAACAAAATTTTTTCACGGTGTCCTCGCTTATCGTCATTGGAACTACATATACTGGTTGGGTTACTGTAGTTGGTGGGGATACTGTAGGGTTTCGGAAGGAAATTTTAGAAAATTTAGAAAAAAAGTTTTTTTTTCGTCAGAAATTTAGGATTTACTGAAAATCTAGTAAAAGTTTAACTTTTGTGAAAAATCTCAAAATCTCCGAATCTCAGAATCCCCGAATCTCAAAATTTCGGAATTTCAGAATGTTAGAATTTTGGATTCTCAGGATTTTAGAATCTCCGAATCTCACTATCAGAATATTGGAATCTCAGAAAACATGCATTTAAATATATTTTTTCATCAAAACGAAAATAGTATATTTACGTCGGATTACTGTAGTTTCTGTTTCTGAGATTCTAATATTCCAAGATTCTGAGACTCTGAAAACGAGATTCGAAGATTCTGAGATTCCAAGATTCTGAGAGTATGAGATTCCGAAATTCTCAGATTCGGGGATTTCGAGATTTTGAGATTTTGAAATTCCGAGATTCGGGGTATTTTGAGATTCGGAATTTCTAGAATCTCAGAATCTCTGAATCCTGAACGGACGATTAACGACTACCGGTCCATTTAGTAAAATTTGAAAACCGTTCTGGAATCAGGGTGCACCTTTCTATTCATTGGATCTACTGGTATTACCCTAATAAGTTTCTGGATTCTGC</canonical>
            <polymorphic>TTCGATGCGTTTTTCTCGATGAAGAAATTTTTTTGAATGTTTTCTTTATTTTTATGTCGATCTACATGCATTTCTGCACATTTTGATGCAATAAAAAAGTTCACCGTACACCACCTTTAAGAAAATATTTTTTGTGAAATAATAAAAATTTCTAGAGATTGGTTTAAAGATGGATATCTGTTTTCAATGAACTTTCACAAAAAAGTTGTCAACTACAAAATTAAAGCTCTATTTTTGTTTCGTATCTTCTGAAAATTTCAGACAAATTGAAAAATTCTGAATCACAGGAGCTCAAAAACAAAATTTTTTCACGGTGTCCTCGCTTATCGTCATTGGAACTACATATACTGGTTGGGTTACTGTAGTTGGTGGGGATACTGTAGGGTTTCGGAAGGAAATTTTAGAAAATTTAGAAAAAAAGTTTTTTTTTCGTCAGAAATTTAGGATTTACTGAAAATCTAGTAAAAGTTTAACTTTTGTGAAAAATCTCAAAATCTCCRAATCTCAGAATCCCCGAATCTCAAAATTTCGGAATTTCAGAATGTTAGAATTTTGGATTCTCAGGATTTTAGAATCTCCGAATCTCACTATCAGAATATTGGAATCTCAGAAAACATGCATTTAAATATATTTTTTCATCAAAACGAAAATAGTATATTTACGTCGGATTACTGTAGTTTCTGTTTCTGAGATTCTAATATTCCAAGATTCTGAGACTCTGAAAACGAGATTCGAAGATTCTGAGATTCCAAGATTCTGAGAGTATGAGATTCCGAAATTCTCAGATTCGGGGATTTCGAGATTTTGAGATTTTGAAATTCCGAGATTCGGGGTATTTTGAGATTCGGAATTTCTAGAATCTCAGAATCTCTGAATCCTGAACGGACGATTAACGACTACCGGTCCATTTAGTAAAATTTGAAAACCGTTCTGGAATCAGGGTGCACCTTTCTATTCATTGGATCTACTGGTATTACCCTAATAAGTTTCTGGATTCTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>279 221 89 61 59 40 40 22 17 16 16 16 16 15 14 8 8 8 8 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>279 229 89 61 59 40 40 22 17 16 16 16 16 15 14 8 8 8 8 8 8 8 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>250 128 112 64 57 45 40 38 25 24 24 22 22 18 17 16 16 16 14 10 10 8 8 8 8</canonical_bands>
                <polymorphic_bands>250 128 112 72 57 45 40 38 25 24 24 22 22 18 17 16 16 16 14 10 10 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>279 221 89 61 59 40 40 22 22 17 16 16 16 16 15 8 8 8 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>279 229 89 61 59 40 40 22 22 17 16 16 16 16 15 8 8 8 8 8 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCGTCAGAAATTTAGGATTTA</pcr_primer_p1>
		<pcr_primer_p2>GAAACTACAGTAATCCGACGTAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTTCGTCAGAAATTTAGGATTTACTGAAAATCTAGTAAAAGTTTAACTTTTGTGAAAAATCTCAAAATCTCCGAATCTCAGAATCCCCGAATCTCAAAATTTCGGAATTTCAGAATGTTAGAATTTTGGATTCTCAGGATTTTAGAATCTCCGAATCTCACTATCAGAATATTGGAATCTCAGAAAACATGCATTTAAATATATTTTTTCATCAAAACGAAAATAGTATATTTACGTCGGATTACTGTAGTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTCGTCAGAAATTTAGGATTTACTGAAAATCTAGTAAAAGTTTAACTTTTGTGAAAAATCTCAAAATCTCCRAATCTCAGAATCCCCGAATCTCAAAATTTCGGAATTTCAGAATGTTAGAATTTTGGATTCTCAGGATTTTAGAATCTCCGAATCTCACTATCAGAATATTGGAATCTCAGAAAACATGCATTTAAATATATTTTTTCATCAAAACGAAAATAGTATATTTACGTCGGATTACTGTAGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27168</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>231182</contig_pos>
        <strand></strand>
        <context>atttcggaat[T/C]tcagaatgtt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATCTCAAAATCTCCGAATCTCAGAATCCCCGAATCTCAAAATTTCGGAAT</left_flank>
        <right_flank>TCAGAATGTTAGAATTTTGGATTCTCAGGATTTTAGAATCTCCGAATCTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTTTTCTTTATTTTTATGTCGATCTACATGCATTTCTGCACATTTTGATGCAATAAAAAAGTTCACCGTACACCACCTTTAAGAAAATATTTTTTGTGAAATAATAAAAATTTCTAGAGATTGGTTTAAAGATGGATATCTGTTTTCAATGAACTTTCACAAAAAAGTTGTCAACTACAAAATTAAAGCTCTATTTTTGTTTCGTATCTTCTGAAAATTTCAGACAAATTGAAAAATTCTGAATCACAGGAGCTCAAAAACAAAATTTTTTCACGGTGTCCTCGCTTATCGTCATTGGAACTACATATACTGGTTGGGTTACTGTAGTTGGTGGGGATACTGTAGGGTTTCGGAAGGAAATTTTAGAAAATTTAGAAAAAAAGTTTTTTTTTCGTCAGAAATTTAGGATTTACTGAAAATCTAGTAAAAGTTTAACTTTTGTGAAAAATCTCAAAATCTCCGAATCTCAGAATCCCCGAATCTCAAAATTTCGGAATTTCAGAATGTTAGAATTTTGGATTCTCAGGATTTTAGAATCTCCGAATCTCACTATCAGAATATTGGAATCTCAGAAAACATGCATTTAAATATATTTTTTCATCAAAACGAAAATAGTATATTTACGTCGGATTACTGTAGTTTCTGTTTCTGAGATTCTAATATTCCAAGATTCTGAGACTCTGAAAACGAGATTCGAAGATTCTGAGATTCCAAGATTCTGAGAGTATGAGATTCCGAAATTCTCAGATTCGGGGATTTCGAGATTTTGAGATTTTGAAATTCCGAGATTCGGGGTATTTTGAGATTCGGAATTTCTAGAATCTCAGAATCTCTGAATCCTGAACGGACGATTAACGACTACCGGTCCATTTAGTAAAATTTGAAAACCGTTCTGGAATCAGGGTGCACCTTTCTATTCATTGGATCTACTGGTATTACCCTAATAAGTTTCTGGATTCTGCATTTTTAATGTGGCAAGATATGAATTTGTAAAAAAA</canonical>
            <polymorphic>ATGTTTTCTTTATTTTTATGTCGATCTACATGCATTTCTGCACATTTTGATGCAATAAAAAAGTTCACCGTACACCACCTTTAAGAAAATATTTTTTGTGAAATAATAAAAATTTCTAGAGATTGGTTTAAAGATGGATATCTGTTTTCAATGAACTTTCACAAAAAAGTTGTCAACTACAAAATTAAAGCTCTATTTTTGTTTCGTATCTTCTGAAAATTTCAGACAAATTGAAAAATTCTGAATCACAGGAGCTCAAAAACAAAATTTTTTCACGGTGTCCTCGCTTATCGTCATTGGAACTACATATACTGGTTGGGTTACTGTAGTTGGTGGGGATACTGTAGGGTTTCGGAAGGAAATTTTAGAAAATTTAGAAAAAAAGTTTTTTTTTCGTCAGAAATTTAGGATTTACTGAAAATCTAGTAAAAGTTTAACTTTTGTGAAAAATCTCAAAATCTCCGAATCTCAGAATCCCCGAATCTCAAAATTTCGGAATYTCAGAATGTTAGAATTTTGGATTCTCAGGATTTTAGAATCTCCGAATCTCACTATCAGAATATTGGAATCTCAGAAAACATGCATTTAAATATATTTTTTCATCAAAACGAAAATAGTATATTTACGTCGGATTACTGTAGTTTCTGTTTCTGAGATTCTAATATTCCAAGATTCTGAGACTCTGAAAACGAGATTCGAAGATTCTGAGATTCCAAGATTCTGAGAGTATGAGATTCCGAAATTCTCAGATTCGGGGATTTCGAGATTTTGAGATTTTGAAATTCCGAGATTCGGGGTATTTTGAGATTCGGAATTTCTAGAATCTCAGAATCTCTGAATCCTGAACGGACGATTAACGACTACCGGTCCATTTAGTAAAATTTGAAAACCGTTCTGGAATCAGGGTGCACCTTTCTATTCATTGGATCTACTGGTATTACCCTAATAAGTTTCTGGATTCTGCATTTTTAATGTGGCAAGATATGAATTTGTAAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>228 110 107 107 95 87 67 40 32 31 29 19 16 14 10 8</canonical_bands>
                <polymorphic_bands>228 110 107 107 95 87 67 40 32 31 29 24 19 14 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>228 110 107 95 87 72 67 40 35 32 31 29 16 14 11 10 8 8</canonical_bands>
                <polymorphic_bands>228 110 107 95 87 72 67 40 35 32 31 29 24 14 11 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCGTCAGAAATTTAGGATTTA</pcr_primer_p1>
		<pcr_primer_p2>GAAACTACAGTAATCCGACGTAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTTCGTCAGAAATTTAGGATTTACTGAAAATCTAGTAAAAGTTTAACTTTTGTGAAAAATCTCAAAATCTCCGAATCTCAGAATCCCCGAATCTCAAAATTTCGGAATTTCAGAATGTTAGAATTTTGGATTCTCAGGATTTTAGAATCTCCGAATCTCACTATCAGAATATTGGAATCTCAGAAAACATGCATTTAAATATATTTTTTCATCAAAACGAAAATAGTATATTTACGTCGGATTACTGTAGTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTCGTCAGAAATTTAGGATTTACTGAAAATCTAGTAAAAGTTTAACTTTTGTGAAAAATCTCAAAATCTCCGAATCTCAGAATCCCCGAATCTCAAAATTTCGGAATYTCAGAATGTTAGAATTTTGGATTCTCAGGATTTTAGAATCTCCGAATCTCACTATCAGAATATTGGAATCTCAGAAAACATGCATTTAAATATATTTTTTCATCAAAACGAAAATAGTATATTTACGTCGGATTACTGTAGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27169</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>233184</contig_pos>
        <strand>+</strand>
        <context>AAGGCTTCCA[C/T]AAATAGGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTAATAGAAGGGCACCTCTAATAGAAGAGCATTTAGAGAAAGGCTTCCA</left_flank>
        <right_flank>AAATAGGAAAAAGAATAATTACATAAATCGAAATTTACAAAATTCAGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAACCGAAATAAATTGATTTATAGTGCGCATATAGAGACTTAACTTTGTATAGAGACTTAACATATAGAGACTTAAGTTTGTCCCAATTTATCTCAGTTTCTATGAGAGATATCAAAAAGTAGTCAACTGATGAAATAGATCTGATATTATGATAAACATTTTACTAGTTGATTACTTTTTGNNNNNNNNNNNAAAAGTGCAAAGCTGTTACTTTTGAAACGTTGTACTTGCGAAACGTTGTACTTTCGAAACGTCACACTTGCGAAACGTCGTCTTTCGAAACGTCGCGGAGCCATAATTTCATCACGATTTGGATACATTTCCCGAAAACACTCATAAAGGTACAAATTCGTGTATTTCAATTTTCTAGTCATGGCTTGCTAGCCAGTCAAACTATTATTATTATTTTGCTCAAAATACAGTAAAACCTGTATTAGAAGAGCACCTTTAATAGAAGGGCACCTCTAATAGAAGAGCATTTAGAGAAAGGCTTCCAAAAATAGGAAAAAGAATAATTACATAAATCGAAATTTACAAAATTCAGAAATTTTTTCTTTTTAAAAATTCTAAAATTCGGAATTTTTAGAAAAAAAAATTTAAATTTCTAAATATGTTCTAAAAATCTAAAAAATTGGACTTTTTTGAAAAAAATTGAAATTCTAAAAACTCTAAACCTCAAAATTCGTAAAATTTACGAAATTTCCCAAATCGAAGAAACACCAAATATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAA</canonical>
            <polymorphic>AGAAACCGAAATAAATTGATTTATAGTGCGCATATAGAGACTTAACTTTGTATAGAGACTTAACATATAGAGACTTAAGTTTGTCCCAATTTATCTCAGTTTCTATGAGAGATATCAAAAAGTAGTCAACTGATGAAATAGATCTGATATTATGATAAACATTTTACTAGTTGATTACTTTTTGNNNNNNNNNNNAAAAGTGCAAAGCTGTTACTTTTGAAACGTTGTACTTGCGAAACGTTGTACTTTCGAAACGTCACACTTGCGAAACGTCGTCTTTCGAAACGTCGCGGAGCCATAATTTCATCACGATTTGGATACATTTCCCGAAAACACTCATAAAGGTACAAATTCGTGTATTTCAATTTTCTAGTCATGGCTTGCTAGCCAGTCAAACTATTATTATTATTTTGCTCAAAATACAGTAAAACCTGTATTAGAAGAGCACCTTTAATAGAAGGGCACCTCTAATAGAAGAGCATTTAGAGAAAGGCTTCCAYAAATAGGAAAAAGAATAATTACATAAATCGAAATTTACAAAATTCAGAAATTTTTTCTTTTTAAAAATTCTAAAATTCGGAATTTTTAGAAAAAAAAATTTAAATTTCTAAATATGTTCTAAAAATCTAAAAAATTGGACTTTTTTGAAAAAAATTGAAATTCTAAAAACTCTAAACCTCAAAATTCGTAAAATTTACGAAATTTCCCAAATCGAAGAAACACCAAATATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCTGTATTAGAAGAGCACCTT</pcr_primer_p1>
		<pcr_primer_p2>GAGGTTTAGAGTTTTTAGAATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AACCTGTATTAGAAGAGCACCTTTAATAGAAGGGCACCTCTAATAGAAGAGCATTTAGAGAAAGGCTTCCAAAAATAGGAAAAAGAATAATTACATAAATCGAAATTTACAAAATTCAGAAATTTTTTCTTTTTAAAAATTCTAAAATTCGGAATTTTTAGAAAAAAAAATTTAAATTTCTAAATATGTTCTAAAAATCTAAAAAATTGGACTTTTTTGAAAAAAATTGAAATTCTAAAAACTCTAAACCTC</canonical_amplicon>
		<polymorphic_amplicon>AACCTGTATTAGAAGAGCACCTTTAATAGAAGGGCACCTCTAATAGAAGAGCATTTAGAGAAAGGCTTCCAYAAATAGGAAAAAGAATAATTACATAAATCGAAATTTACAAAATTCAGAAATTTTTTCTTTTTAAAAATTCTAAAATTCGGAATTTTTAGAAAAAAAAATTTAAATTTCTAAATATGTTCTAAAAATCTAAAAAATTGGACTTTTTTGAAAAAAATTGAAATTCTAAAAACTCTAAACCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27170</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>233205</contig_pos>
        <strand>+</strand>
        <context>AAGAATAATT[A/C]CATAAATCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATAGAAGAGCATTTAGAGAAAGGCTTCCAAAAATAGGAAAAAGAATAATT</left_flank>
        <right_flank>CATAAATCGAAATTTACAAAATTCAGAAATTTTTTCTTTTTAAAAATTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAGTGCGCATATAGAGACTTAACTTTGTATAGAGACTTAACATATAGAGACTTAAGTTTGTCCCAATTTATCTCAGTTTCTATGAGAGATATCAAAAAGTAGTCAACTGATGAAATAGATCTGATATTATGATAAACATTTTACTAGTTGATTACTTTTTGNNNNNNNNNNNAAAAGTGCAAAGCTGTTACTTTTGAAACGTTGTACTTGCGAAACGTTGTACTTTCGAAACGTCACACTTGCGAAACGTCGTCTTTCGAAACGTCGCGGAGCCATAATTTCATCACGATTTGGATACATTTCCCGAAAACACTCATAAAGGTACAAATTCGTGTATTTCAATTTTCTAGTCATGGCTTGCTAGCCAGTCAAACTATTATTATTATTTTGCTCAAAATACAGTAAAACCTGTATTAGAAGAGCACCTTTAATAGAAGGGCACCTCTAATAGAAGAGCATTTAGAGAAAGGCTTCCAAAAATAGGAAAAAGAATAATTACATAAATCGAAATTTACAAAATTCAGAAATTTTTTCTTTTTAAAAATTCTAAAATTCGGAATTTTTAGAAAAAAAAATTTAAATTTCTAAATATGTTCTAAAAATCTAAAAAATTGGACTTTTTTGAAAAAAATTGAAATTCTAAAAACTCTAAACCTCAAAATTCGTAAAATTTACGAAATTTCCCAAATCGAAGAAACACCAAATATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTAAGAAATTCAGAAATTCA</canonical>
            <polymorphic>TATAGTGCGCATATAGAGACTTAACTTTGTATAGAGACTTAACATATAGAGACTTAAGTTTGTCCCAATTTATCTCAGTTTCTATGAGAGATATCAAAAAGTAGTCAACTGATGAAATAGATCTGATATTATGATAAACATTTTACTAGTTGATTACTTTTTGNNNNNNNNNNNAAAAGTGCAAAGCTGTTACTTTTGAAACGTTGTACTTGCGAAACGTTGTACTTTCGAAACGTCACACTTGCGAAACGTCGTCTTTCGAAACGTCGCGGAGCCATAATTTCATCACGATTTGGATACATTTCCCGAAAACACTCATAAAGGTACAAATTCGTGTATTTCAATTTTCTAGTCATGGCTTGCTAGCCAGTCAAACTATTATTATTATTTTGCTCAAAATACAGTAAAACCTGTATTAGAAGAGCACCTTTAATAGAAGGGCACCTCTAATAGAAGAGCATTTAGAGAAAGGCTTCCAAAAATAGGAAAAAGAATAATTMCATAAATCGAAATTTACAAAATTCAGAAATTTTTTCTTTTTAAAAATTCTAAAATTCGGAATTTTTAGAAAAAAAAATTTAAATTTCTAAATATGTTCTAAAAATCTAAAAAATTGGACTTTTTTGAAAAAAATTGAAATTCTAAAAACTCTAAACCTCAAAATTCGTAAAATTTACGAAATTTCCCAAATCGAAGAAACACCAAATATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTAAGAAATTCAGAAATTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCTGTATTAGAAGAGCACCTT</pcr_primer_p1>
		<pcr_primer_p2>GAGGTTTAGAGTTTTTAGAATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AACCTGTATTAGAAGAGCACCTTTAATAGAAGGGCACCTCTAATAGAAGAGCATTTAGAGAAAGGCTTCCAAAAATAGGAAAAAGAATAATTACATAAATCGAAATTTACAAAATTCAGAAATTTTTTCTTTTTAAAAATTCTAAAATTCGGAATTTTTAGAAAAAAAAATTTAAATTTCTAAATATGTTCTAAAAATCTAAAAAATTGGACTTTTTTGAAAAAAATTGAAATTCTAAAAACTCTAAACCTC</canonical_amplicon>
		<polymorphic_amplicon>AACCTGTATTAGAAGAGCACCTTTAATAGAAGGGCACCTCTAATAGAAGAGCATTTAGAGAAAGGCTTCCAAAAATAGGAAAAAGAATAATTMCATAAATCGAAATTTACAAAATTCAGAAATTTTTTCTTTTTAAAAATTCTAAAATTCGGAATTTTTAGAAAAAAAAATTTAAATTTCTAAATATGTTCTAAAAATCTAAAAAATTGGACTTTTTTGAAAAAAATTGAAATTCTAAAAACTCTAAACCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27171</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>304462</contig_pos>
        <strand>+</strand>
        <context>TAGAATTCAT[A/G]AACTCATTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTCCCGTTGGTTGTCTCCTTCTGAACTCTTTCCGGATCTTAGAATTCAT</left_flank>
        <right_flank>AACTCATTGAACTATGCAAAAAGGTCATTTGCCCTTTTTCTAATTTTGTA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGTATATCTTTTACTTGGACCGAGATAACTAAGCTCAACCGTAAGCTCTCTAATAGAACAGTACCCAAACCGTTTATTTTGAGCTCGATTGTCTCGGTTCCTGTAAAAGATATCAAAAAGTGATCGAATGATAAAATGTTTATCATAATATCACCAACATTTTATCAATAGATCATTTATTGATATCTCTCATAGAAACCGAGATAATGGAGCTGCACGTACAGGGTGGGAATCTATTAGAGCAAATACGGTAGTGGCTAATGAAATTCCAAATGTCTGGTTCATAAAACTGTTTAAAAATCTAGTCGTGCAATTTGGAAGCTCCAAGTTTGAAAGATTCTGAAAATCTAAATAATTTTTTGAAGAAGATTCTATGTTCACAAATTCCATAAAAACAAAATCAAAAAAATATTTAAAAAATTCCCAGACTTATTTTGTGTGTTCATCTTCCCGTTGGTTGTCTCCTTCTGAACTCTTTCCGGATCTTAGAATTCATGAACTCATTGAACTATGCAAAAAGGTCATTTGCCCTTTTTCTAATTTTGTATCAAAAAGAAAAAGTGATAAATTTTATATGTCTTTTTTCTCCAGGTAGCAGTATTCCGTTTTATTCCTAAGGCAGTTGCTCTTTCCATTTTTTTCCTTCTCGTTCAACATCTTCATATCTCTGCGTCTCCTCGTCTCCTCTCACTCTCTCATCAAGCTTTTTCTAATTCCGTCTGTGTCTCGCACGTCTTCGCCACACCCTTTCGTTTCTCTTGCTCCGTCGTTTCGGTTTTTCTTTTCATTCGAATTGCCTTTTTGGTTGGAAAAACGAAAAACGGGGGCTACGAGTAGTGTCATTGGCAGAAGGAGTGTGCCCTCCACCCTTTTTAGCCTTCTAACACACAGAAAAAGAGCATGTACATGTGACGAAAAACGAAACAAATGCGCTTGTCCTTCTTCTTCGCCAGGCCTTTTTCCTTCATTCATTTTCTTCTCTCAGGATCACTTGTAT</canonical>
            <polymorphic>TTTTGTATATCTTTTACTTGGACCGAGATAACTAAGCTCAACCGTAAGCTCTCTAATAGAACAGTACCCAAACCGTTTATTTTGAGCTCGATTGTCTCGGTTCCTGTAAAAGATATCAAAAAGTGATCGAATGATAAAATGTTTATCATAATATCACCAACATTTTATCAATAGATCATTTATTGATATCTCTCATAGAAACCGAGATAATGGAGCTGCACGTACAGGGTGGGAATCTATTAGAGCAAATACGGTAGTGGCTAATGAAATTCCAAATGTCTGGTTCATAAAACTGTTTAAAAATCTAGTCGTGCAATTTGGAAGCTCCAAGTTTGAAAGATTCTGAAAATCTAAATAATTTTTTGAAGAAGATTCTATGTTCACAAATTCCATAAAAACAAAATCAAAAAAATATTTAAAAAATTCCCAGACTTATTTTGTGTGTTCATCTTCCCGTTGGTTGTCTCCTTCTGAACTCTTTCCGGATCTTAGAATTCATRAACTCATTGAACTATGCAAAAAGGTCATTTGCCCTTTTTCTAATTTTGTATCAAAAAGAAAAAGTGATAAATTTTATATGTCTTTTTTCTCCAGGTAGCAGTATTCCGTTTTATTCCTAAGGCAGTTGCTCTTTCCATTTTTTTCCTTCTCGTTCAACATCTTCATATCTCTGCGTCTCCTCGTCTCCTCTCACTCTCTCATCAAGCTTTTTCTAATTCCGTCTGTGTCTCGCACGTCTTCGCCACACCCTTTCGTTTCTCTTGCTCCGTCGTTTCGGTTTTTCTTTTCATTCGAATTGCCTTTTTGGTTGGAAAAACGAAAAACGGGGGCTACGAGTAGTGTCATTGGCAGAAGGAGTGTGCCCTCCACCCTTTTTAGCCTTCTAACACACAGAAAAAGAGCATGTACATGTGACGAAAAACGAAACAAATGCGCTTGTCCTTCTTCTTCGCCAGGCCTTTTTCCTTCATTCATTTTCTTCTCTCAGGATCACTTGTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>497 406 91 6</canonical_bands>
                <polymorphic_bands>903 91 6</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>489 482 15 14</canonical_bands>
                <polymorphic_bands>504 482 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTCCCAGACTTATTTTGT</pcr_primer_p1>
		<pcr_primer_p2>ATATGAAGATGTTGAACGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTCCCAGACTTATTTTGTGTGTTCATCTTCCCGTTGGTTGTCTCCTTCTGAACTCTTTCCGGATCTTAGAATTCATGAACTCATTGAACTATGCAAAAAGGTCATTTGCCCTTTTTCTAATTTTGTATCAAAAAGAAAAAGTGATAAATTTTATATGTCTTTTTTCTCCAGGTAGCAGTATTCCGTTTTATTCCTAAGGCAGTTGCTCTTTCCATTTTTTTCCTTCTCGTTCAACATCTTCATAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTCCCAGACTTATTTTGTGTGTTCATCTTCCCGTTGGTTGTCTCCTTCTGAACTCTTTCCGGATCTTAGAATTCATRAACTCATTGAACTATGCAAAAAGGTCATTTGCCCTTTTTCTAATTTTGTATCAAAAAGAAAAAGTGATAAATTTTATATGTCTTTTTTCTCCAGGTAGCAGTATTCCGTTTTATTCCTAAGGCAGTTGCTCTTTCCATTTTTTTCCTTCTCGTTCAACATCTTCATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27172</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>305239</contig_pos>
        <strand></strand>
        <context>aattaattaa[A/G]aaaatacaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCTGACTGAAGCTCTTACTTCCTTTCCAATTTCTCCATAATTAATTAA</left_flank>
        <right_flank>AAAATACAAAATATGATTTTTTCAGATTTTCGCGAATTTTTGAATATTTT</right_flank>
        <qual_score>46</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTTCTTTTCATTCGAATTGCCTTTTTGGTTGGAAAAACGAAAAACGGGGGCTACGAGTAGTGTCATTGGCAGAAGGAGTGTGCCCTCCACCCTTTTTAGCCTTCTAACACACAGAAAAAGAGCATGTACATGTGACGAAAAACGAAACAAATGCGCTTGTCCTTCTTCTTCGCCAGGCCTTTTTCCTTCATTCATTTTCTTCTCTCAGGATCACTTGTATCCATTTTTTCTTTTTGTTTTTCTATGTGCAACCACCTCCTTTTCCTCTTTTTTCCGTTATTTCAGTCTTCTGTACCTTTTTTTTCTTTTTTTTTATGTTCTTTTGTTCTTCATCCACTCGGAAACTAATCAAATTTAAGATTCTTCCGAAGAAAAGAACTTTTGTGTTTTGTTGGAGTTTAGTAGATTCCGGAAGAATTTTTTTTGGAGAAAAAGTTTCAAAAAAAATTCTGACTGAAGCTCTTACTTCCTTTCCAATTTCTCCATAATTAATTAAAAAAATACAAAATATGATTTTTTCAGATTTTCGCGAATTTTTGAATATTTTATTTTTTACTTTTCTCATTTTTTAATTTAAATATAAACTGTATTCTTTGAAACTCGAGCAAATCTGAATTCACAAAAAATTTCGTTTTACTAATTTTTAACAATATGTTCAAGTTTGAATATATGTTTTCAGTTTCCCCATAATTAAAAAAGTAGAAACTATGAATTTGGATTTTAAAACAATTTAAAAACTTGGATGCTTCGATTTTCAAAACATTCCAATTTAAATCTTATCACTGAAAATTGATTATTTAAAAACTCGAAATTTTGAAATTGAAAAAATTTGAAAAGTCGAAATTGAGACTATGAATTCAAAACAACAAACTATGAATTTAGGTTTTCGCGAAGTTTTGAAATGCCGATGTTTCAATTTCCAAAATTTCAAATTTTAATCTTTTCCCTGAAAATTGTCATCAGACAAATTTTTGAATCTGATTCTGAAATTTTCTAA</canonical>
            <polymorphic>GTTTTTCTTTTCATTCGAATTGCCTTTTTGGTTGGAAAAACGAAAAACGGGGGCTACGAGTAGTGTCATTGGCAGAAGGAGTGTGCCCTCCACCCTTTTTAGCCTTCTAACACACAGAAAAAGAGCATGTACATGTGACGAAAAACGAAACAAATGCGCTTGTCCTTCTTCTTCGCCAGGCCTTTTTCCTTCATTCATTTTCTTCTCTCAGGATCACTTGTATCCATTTTTTCTTTTTGTTTTTCTATGTGCAACCACCTCCTTTTCCTCTTTTTTCCGTTATTTCAGTCTTCTGTACCTTTTTTTTCTTTTTTTTTATGTTCTTTTGTTCTTCATCCACTCGGAAACTAATCAAATTTAAGATTCTTCCGAAGAAAAGAACTTTTGTGTTTTGTTGGAGTTTAGTAGATTCCGGAAGAATTTTTTTTGGAGAAAAAGTTTCAAAAAAAATTCTGACTGAAGCTCTTACTTCCTTTCCAATTTCTCCATAATTAATTAARAAAATACAAAATATGATTTTTTCAGATTTTCGCGAATTTTTGAATATTTTATTTTTTACTTTTCTCATTTTTTAATTTAAATATAAACTGTATTCTTTGAAACTCGAGCAAATCTGAATTCACAAAAAATTTCGTTTTACTAATTTTTAACAATATGTTCAAGTTTGAATATATGTTTTCAGTTTCCCCATAATTAAAAAAGTAGAAACTATGAATTTGGATTTTAAAACAATTTAAAAACTTGGATGCTTCGATTTTCAAAACATTCCAATTTAAATCTTATCACTGAAAATTGATTATTTAAAAACTCGAAATTTTGAAATTGAAAAAATTTGAAAAGTCGAAATTGAGACTATGAATTCAAAACAACAAACTATGAATTTAGGTTTTCGCGAAGTTTTGAAATGCCGATGTTTCAATTTCCAAAATTTCAAATTTTAATCTTTTCCCTGAAAATTGTCATCAGACAAATTTTTGAATCTGATTCTGAAATTTTCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTCTGACTGAAGCTCTTACT</pcr_primer_p1>
		<pcr_primer_p2>TAATTATGGGGAAACTGAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATTCTGACTGAAGCTCTTACTTCCTTTCCAATTTCTCCATAATTAATTAAAAAAATACAAAATATGATTTTTTCAGATTTTCGCGAATTTTTGAATATTTTATTTTTTACTTTTCTCATTTTTTAATTTAAATATAAACTGTATTCTTTGAAACTCGAGCAAATCTGAATTCACAAAAAATTTCGTTTTACTAATTTTTAACAATATGTTCAAGTTTGAATATATGTTTTCAGTTTCCCCATAATTA</canonical_amplicon>
		<polymorphic_amplicon>AAAATTCTGACTGAAGCTCTTACTTCCTTTCCAATTTCTCCATAATTAATTAARAAAATACAAAATATGATTTTTTCAGATTTTCGCGAATTTTTGAATATTTTATTTTTTACTTTTCTCATTTTTTAATTTAAATATAAACTGTATTCTTTGAAACTCGAGCAAATCTGAATTCACAAAAAATTTCGTTTTACTAATTTTTAACAATATGTTCAAGTTTGAATATATGTTTTCAGTTTCCCCATAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27173</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>307805</contig_pos>
        <strand>+</strand>
        <context>AAACCAGAAG[A/G]AAATGGGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGACTTATGGCAGTTTCCATTTAAATTTGATATGCAATCAAAACCAGAAG</left_flank>
        <right_flank>AAATGGGAAAAAATTCGCTAAAATTTTTTTTTCATTTGTTCAAAAAATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGCCAAACTTCAATTAACCCCCTAGAAGAAGGAGATGTCATCCTGAGAAACCCACACACTTTTGTTTTTGCCCGCTTTCATAGTTGACAAATTGAAGCCAGTTTAAGTGTGACTGCACAGGTCCTGGGCGCGCATACGCATAATGGATGGGCGACGGAGGACGCGCCGATGAATTGGGTACAGGGAAAGGACGCCGGTATGGGGCATATACGGGGCATATGGGGCACACCGCCGCCGCAAAGCATCTCCTCGCCTGTCTTGCTGGCACTCGATGAAATGAACTAAAACGTTGGTTGGGGGTTCCTAGAAGTATCAGTTAAGTTCTATTGTGATGTGATTTTGTTCAGTTCTTCCGATTTCGTACTTTTCCTTTATTATTCCATATTCTTTTATATTTTGAACGACATATTACTGATTTTTTGAAACTCAATGTTTTGGTTTTGAAAAAGACTTATGGCAGTTTCCATTTAAATTTGATATGCAATCAAAACCAGAAGGAAATGGGAAAAAATTCGCTAAAATTTTTTTTTCATTTGTTCAAAAAATATGTCTCACTTTCACTTTTTTTGAAATTGCATGAAAAATCGAAAATTTTTATAATTCAAACTTTGTAATTATTGTATACTTACCAACTTACCTTTTACTCCACCTGAAAATACGATTTTTACAATAATTACAAAGTGAAACCTAAAAATCTCAATATCACCTATTTTGGCGAAAAACATAGCAATTGACGAGTGAAAGACATGTTTCTGCAAGAATTCAGCGATTTGTTAGTCTGCCATAACTCTTTTTCACAAAAAACATCGAAAGAATAATCGAAAACCAGTATGTAGGCTCGAATTGACGAAAAATTGGCAAAGTTGCCGGTGTGGATTTACGGTAAACAATGCGCGCATCCGGGATTTCGGAGTGTTGTAGTCGGCCTACCGTATCAGACCCATATCGCACACATCGCCCACCCACCTAGAATCCATCTAGGATACGCGCGCATTCGG</canonical>
            <polymorphic>AACGCCAAACTTCAATTAACCCCCTAGAAGAAGGAGATGTCATCCTGAGAAACCCACACACTTTTGTTTTTGCCCGCTTTCATAGTTGACAAATTGAAGCCAGTTTAAGTGTGACTGCACAGGTCCTGGGCGCGCATACGCATAATGGATGGGCGACGGAGGACGCGCCGATGAATTGGGTACAGGGAAAGGACGCCGGTATGGGGCATATACGGGGCATATGGGGCACACCGCCGCCGCAAAGCATCTCCTCGCCTGTCTTGCTGGCACTCGATGAAATGAACTAAAACGTTGGTTGGGGGTTCCTAGAAGTATCAGTTAAGTTCTATTGTGATGTGATTTTGTTCAGTTCTTCCGATTTCGTACTTTTCCTTTATTATTCCATATTCTTTTATATTTTGAACGACATATTACTGATTTTTTGAAACTCAATGTTTTGGTTTTGAAAAAGACTTATGGCAGTTTCCATTTAAATTTGATATGCAATCAAAACCAGAAGRAAATGGGAAAAAATTCGCTAAAATTTTTTTTTCATTTGTTCAAAAAATATGTCTCACTTTCACTTTTTTTGAAATTGCATGAAAAATCGAAAATTTTTATAATTCAAACTTTGTAATTATTGTATACTTACCAACTTACCTTTTACTCCACCTGAAAATACGATTTTTACAATAATTACAAAGTGAAACCTAAAAATCTCAATATCACCTATTTTGGCGAAAAACATAGCAATTGACGAGTGAAAGACATGTTTCTGCAAGAATTCAGCGATTTGTTAGTCTGCCATAACTCTTTTTCACAAAAAACATCGAAAGAATAATCGAAAACCAGTATGTAGGCTCGAATTGACGAAAAATTGGCAAAGTTGCCGGTGTGGATTTACGGTAAACAATGCGCGCATCCGGGATTTCGGAGTGTTGTAGTCGGCCTACCGTATCAGACCCATATCGCACACATCGCCCACCCACCTAGAATCCATCTAGGATACGCGCGCATTCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAACGACATATTACTGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGGAGTAAAAGGTAAGTTGGTAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTGAACGACATATTACTGATTTTTTGAAACTCAATGTTTTGGTTTTGAAAAAGACTTATGGCAGTTTCCATTTAAATTTGATATGCAATCAAAACCAGAAGGAAATGGGAAAAAATTCGCTAAAATTTTTTTTTCATTTGTTCAAAAAATATGTCTCACTTTCACTTTTTTTGAAATTGCATGAAAAATCGAAAATTTTTATAATTCAAACTTTGTAATTATTGTATACTTACCAACTTACCTTTTACTCCA</canonical_amplicon>
		<polymorphic_amplicon>TTGAACGACATATTACTGATTTTTTGAAACTCAATGTTTTGGTTTTGAAAAAGACTTATGGCAGTTTCCATTTAAATTTGATATGCAATCAAAACCAGAAGRAAATGGGAAAAAATTCGCTAAAATTTTTTTTTCATTTGTTCAAAAAATATGTCTCACTTTCACTTTTTTTGAAATTGCATGAAAAATCGAAAATTTTTATAATTCAAACTTTGTAATTATTGTATACTTACCAACTTACCTTTTACTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27174</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>314742</contig_pos>
        <strand></strand>
        <context>gtcgaaaatt[T/C]cgagtttcaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTGAGAAAGTCAAAACACCATTTTTGGATTTTTCGGAATGTCGAAAATT</left_flank>
        <right_flank>CGAGTTTCAAAAAATCGAAATTTCAAAAATTCCGATTTTCTAAATTTAGG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCGGACGAAACAAAAAACATACGAACGTCTCCTCTTTTTTTGGAGAATTTCAGGGGCGACTTCTATACTTTTTTGAAACCGCCCAGTCTGAATTTTTCTTTCTTTTTTTTTGATTTCTTCAGCATTCATTTTGCTTGATTACTGTAGCTTAATACCTGGATTCGTCTGTAGTGCCGTAGAGCACAAATGCAGACACTCGATTTTTGAAAAAAAAAGACGAAAATCAGATTAAAGAGAGAGGTCTCGGGTACTTGAACTTTTGCCTAATACATTTTGCTTGCTTTTTGAAAAATAGGAAATCACTTTTTTCATTTATCTTCTTCTTTCTAGGATATTCTCTGACAGAGAACACAGCATTTTTGAATTTTCAAAAATTTTTTTAGAAATTTCCGTGTTTCTAATTGGAAAGGATAAACCGTTTTTTGGAATTTGAGAGAAAAAAAACAAAATTGAGAAAGTCAAAACACCATTTTTGGATTTTTCGGAATGTCGAAAATTTCGAGTTTCAAAAAATCGAAATTTCAAAAATTCCGATTTTCTAAATTTAGGGATTTCAGAAAATTCCGATTTTCTAAATTTCAAAACTTCTGAATTGCTAGTAATTCCAAGTTTCAAATCTTCGGTATTTCAGAAAATTCCGATTTTCCAATTTTAAAGTAGATTTTGAAAATGAAAAAAAGACACAACTATTCAGCTCGAGAGACAAGGGAACTTTCGTGTGCGCTTTTGACTCACCGTAGCAACAATTTAAAAAAACCGACCTGTCTAGATGAACCCAACCTATTTTAAGCCTAAAAATGCTTCCAAAGTTCCACTTTTAAACAATTCTAACATCATTCTTTTCTTGATCAACATGTTCCATTTCCATCCTTTTCTCACCTCAATTCTGAATAGGTTCAATCAGAAAAATCGAGGAGAAAAAAGAAGAAGAAGAACCTTCTTCTTTATCTGCAATAAAAGCCAAGTGCTCTTCTTCTTCTTCTTCTTTCCAACATCTCA</canonical>
            <polymorphic>CTCGGACGAAACAAAAAACATACGAACGTCTCCTCTTTTTTTGGAGAATTTCAGGGGCGACTTCTATACTTTTTTGAAACCGCCCAGTCTGAATTTTTCTTTCTTTTTTTTTGATTTCTTCAGCATTCATTTTGCTTGATTACTGTAGCTTAATACCTGGATTCGTCTGTAGTGCCGTAGAGCACAAATGCAGACACTCGATTTTTGAAAAAAAAAGACGAAAATCAGATTAAAGAGAGAGGTCTCGGGTACTTGAACTTTTGCCTAATACATTTTGCTTGCTTTTTGAAAAATAGGAAATCACTTTTTTCATTTATCTTCTTCTTTCTAGGATATTCTCTGACAGAGAACACAGCATTTTTGAATTTTCAAAAATTTTTTTAGAAATTTCCGTGTTTCTAATTGGAAAGGATAAACCGTTTTTTGGAATTTGAGAGAAAAAAAACAAAATTGAGAAAGTCAAAACACCATTTTTGGATTTTTCGGAATGTCGAAAATTYCGAGTTTCAAAAAATCGAAATTTCAAAAATTCCGATTTTCTAAATTTAGGGATTTCAGAAAATTCCGATTTTCTAAATTTCAAAACTTCTGAATTGCTAGTAATTCCAAGTTTCAAATCTTCGGTATTTCAGAAAATTCCGATTTTCCAATTTTAAAGTAGATTTTGAAAATGAAAAAAAGACACAACTATTCAGCTCGAGAGACAAGGGAACTTTCGTGTGCGCTTTTGACTCACCGTAGCAACAATTTAAAAAAACCGACCTGTCTAGATGAACCCAACCTATTTTAAGCCTAAAAATGCTTCCAAAGTTCCACTTTTAAACAATTCTAACATCATTCTTTTCTTGATCAACATGTTCCATTTCCATCCTTTTCTCACCTCAATTCTGAATAGGTTCAATCAGAAAAATCGAGGAGAAAAAAGAAGAAGAAGAACCTTCTTCTTTATCTGCAATAAAAGCCAAGTGCTCTTCTTCTTCTTCTTCTTTCCAACATCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>366 272 68 59 46 45 42 23 18 15 15 12 10 9</canonical_bands>
                <polymorphic_bands>366 272 91 59 46 45 42 18 15 15 12 10 9</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>293 214 199 182 88 15 9</canonical_bands>
                <polymorphic_bands>293 214 199 182 88 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGGAATTTGAGAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CGAGCTGAATAGTTGTGTCTT</pcr_primer_p2>
		<pcr_amplicon_size>279</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGGAATTTGAGAGAAAAAAAACAAAATTGAGAAAGTCAAAACACCATTTTTGGATTTTTCGGAATGTCGAAAATTTCGAGTTTCAAAAAATCGAAATTTCAAAAATTCCGATTTTCTAAATTTAGGGATTTCAGAAAATTCCGATTTTCTAAATTTCAAAACTTCTGAATTGCTAGTAATTCCAAGTTTCAAATCTTCGGTATTTCAGAAAATTCCGATTTTCCAATTTTAAAGTAGATTTTGAAAATGAAAAAAAGACACAACTATTCAGCTCG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGGAATTTGAGAGAAAAAAAACAAAATTGAGAAAGTCAAAACACCATTTTTGGATTTTTCGGAATGTCGAAAATTYCGAGTTTCAAAAAATCGAAATTTCAAAAATTCCGATTTTCTAAATTTAGGGATTTCAGAAAATTCCGATTTTCTAAATTTCAAAACTTCTGAATTGCTAGTAATTCCAAGTTTCAAATCTTCGGTATTTCAGAAAATTCCGATTTTCCAATTTTAAAGTAGATTTTGAAAATGAAAAAAAGACACAACTATTCAGCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27175</snp_id>
        <super_contig>c002901201.Contig3</super_contig>
        <contig_pos>336720</contig_pos>
        <strand></strand>
        <context>atttatcaaa[C/T]atattgaaac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAGACGAAGCAACTTTGACAAGCGATAACTCAGCTCAAAATTTATCAAA</left_flank>
        <right_flank>ATATTGAAACTTTGCCAGTTTATTGATGAATTTTTTGAATTCTTGAAATC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAACTACTATACTCAATCCAATCCATTCCATTCCCCACTACGATCCGTCTCATTTTGCTTTTGAATATAACCAACCGACTCTCGTCCTCTCTCTTCACTCATCCACTCAACCTATTTTAGCACGATCCTTTTCTTTTTTGGCGAAAACTGAAAGTTTAGTAGTCGCGGATTTTCGGAAATCCTTTTTGAAAAGGTCATAGTTTTTGTTCTGAAAATATGAGCTAAAATTTTGTGCAGTGCTCCAGAATCTACAGGGTGGCGTACAATTACCCGGACAGATAACAGTGGAGATATTTTTAAACATAAGTATCTTGGAAGCACGAAAATTGGTAGAAACATAATTTTACGTTTGATTCTGATCTACGGAAACTTTCAAAGCGATTCCTCAAGTCTAGGTATGATTGTGATTGTCCAAAGATGAACGTCGTAATGTTTCTAGTGATTTTCATGAGACGAAGCAACTTTGACAAGCGATAACTCAGCTCAAAATTTATCAAACATATTGAAACTTTGCCAGTTTATTGATGAATTTTTTGAATTCTTGAAATCCAAATTTGAGCCCAACAAAACTTTTCACTCAAATTTTATGCAAGCACAAACTTCAGTCCAGGTAATTACCGTAAACACTATAATAGAAGGCCACCCAAACCGCCAATTTTGAACTTTGATATCTCATTTCCTGTAAAAGATATCAAAAAGTTGTCAACTGACAAAATGTATATCATAATATCATAAATATTTTGTCAGTTGACCACTATTTAATGTCTTTTGCATGAACCGAGATATATAAGCTCAAAGTTTACAAATTGGTGCTCTTCTATTAGAGTGTTTAGGGGGTGCGCCCCCTGTGTATGACGATATCATACAGAAAATTCTAGATCTACGAGAATACCAGAACTTGGGAGAATTTTAAGCTAGAAAATAGTTTTGCCCTAGATTTAAATTTTCACAAAATAGTGAAATCTCCTGAAATCTCCTAAATCCCAAAGCTCAGATTCA</canonical>
            <polymorphic>CCAACTACTATACTCAATCCAATCCATTCCATTCCCCACTACGATCCGTCTCATTTTGCTTTTGAATATAACCAACCGACTCTCGTCCTCTCTCTTCACTCATCCACTCAACCTATTTTAGCACGATCCTTTTCTTTTTTGGCGAAAACTGAAAGTTTAGTAGTCGCGGATTTTCGGAAATCCTTTTTGAAAAGGTCATAGTTTTTGTTCTGAAAATATGAGCTAAAATTTTGTGCAGTGCTCCAGAATCTACAGGGTGGCGTACAATTACCCGGACAGATAACAGTGGAGATATTTTTAAACATAAGTATCTTGGAAGCACGAAAATTGGTAGAAACATAATTTTACGTTTGATTCTGATCTACGGAAACTTTCAAAGCGATTCCTCAAGTCTAGGTATGATTGTGATTGTCCAAAGATGAACGTCGTAATGTTTCTAGTGATTTTCATGAGACGAAGCAACTTTGACAAGCGATAACTCAGCTCAAAATTTATCAAAYATATTGAAACTTTGCCAGTTTATTGATGAATTTTTTGAATTCTTGAAATCCAAATTTGAGCCCAACAAAACTTTTCACTCAAATTTTATGCAAGCACAAACTTCAGTCCAGGTAATTACCGTAAACACTATAATAGAAGGCCACCCAAACCGCCAATTTTGAACTTTGATATCTCATTTCCTGTAAAAGATATCAAAAAGTTGTCAACTGACAAAATGTATATCATAATATCATAAATATTTTGTCAGTTGACCACTATTTAATGTCTTTTGCATGAACCGAGATATATAAGCTCAAAGTTTACAAATTGGTGCTCTTCTATTAGAGTGTTTAGGGGGTGCGCCCCCTGTGTATGACGATATCATACAGAAAATTCTAGATCTACGAGAATACCAGAACTTGGGAGAATTTTAAGCTAGAAAATAGTTTTGCCCTAGATTTAAATTTTCACAAAATAGTGAAATCTCCTGAAATCTCCTAAATCCCAAAGCTCAGATTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCTAAAATTTTGTGCAGTG</pcr_primer_p1>
		<pcr_primer_p2>CGTAGATCTAGAATTTTCTGTATGAT</pcr_primer_p2>
		<pcr_amplicon_size>667</pcr_amplicon_size>
		<canonical_amplicon>GAGCTAAAATTTTGTGCAGTGCTCCAGAATCTACAGGGTGGCGTACAATTACCCGGACAGATAACAGTGGAGATATTTTTAAACATAAGTATCTTGGAAGCACGAAAATTGGTAGAAACATAATTTTACGTTTGATTCTGATCTACGGAAACTTTCAAAGCGATTCCTCAAGTCTAGGTATGATTGTGATTGTCCAAAGATGAACGTCGTAATGTTTCTAGTGATTTTCATGAGACGAAGCAACTTTGACAAGCGATAACTCAGCTCAAAATTTATCAAACATATTGAAACTTTGCCAGTTTATTGATGAATTTTTTGAATTCTTGAAATCCAAATTTGAGCCCAACAAAACTTTTCACTCAAATTTTATGCAAGCACAAACTTCAGTCCAGGTAATTACCGTAAACACTATAATAGAAGGCCACCCAAACCGCCAATTTTGAACTTTGATATCTCATTTCCTGTAAAAGATATCAAAAAGTTGTCAACTGACAAAATGTATATCATAATATCATAAATATTTTGTCAGTTGACCACTATTTAATGTCTTTTGCATGAACCGAGATATATAAGCTCAAAGTTTACAAATTGGTGCTCTTCTATTAGAGTGTTTAGGGGGTGCGCCCCCTGTGTATGACGATATCATACAGAAAATTCTAGATCTACG</canonical_amplicon>
		<polymorphic_amplicon>GAGCTAAAATTTTGTGCAGTGCTCCAGAATCTACAGGGTGGCGTACAATTACCCGGACAGATAACAGTGGAGATATTTTTAAACATAAGTATCTTGGAAGCACGAAAATTGGTAGAAACATAATTTTACGTTTGATTCTGATCTACGGAAACTTTCAAAGCGATTCCTCAAGTCTAGGTATGATTGTGATTGTCCAAAGATGAACGTCGTAATGTTTCTAGTGATTTTCATGAGACGAAGCAACTTTGACAAGCGATAACTCAGCTCAAAATTTATCAAAYATATTGAAACTTTGCCAGTTTATTGATGAATTTTTTGAATTCTTGAAATCCAAATTTGAGCCCAACAAAACTTTTCACTCAAATTTTATGCAAGCACAAACTTCAGTCCAGGTAATTACCGTAAACACTATAATAGAAGGCCACCCAAACCGCCAATTTTGAACTTTGATATCTCATTTCCTGTAAAAGATATCAAAAAGTTGTCAACTGACAAAATGTATATCATAATATCATAAATATTTTGTCAGTTGACCACTATTTAATGTCTTTTGCATGAACCGAGATATATAAGCTCAAAGTTTACAAATTGGTGCTCTTCTATTAGAGTGTTTAGGGGGTGCGCCCCCTGTGTATGACGATATCATACAGAAAATTCTAGATCTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27176</snp_id>
        <super_contig>c002901202.Contig1</super_contig>
        <contig_pos>7025</contig_pos>
        <strand>+</strand>
        <context>ATTCCTCGAA[C/T]MCATAATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCGGAAATTCCGAATTTTTCGAAATCCTAAGAATCAAAAATTCCTCGAA</left_flank>
        <right_flank>ACATAATTTTAGGATGCATTATTTTTATTCGAACTGAAAAATTATAATGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTGAAGAAGGATGGCTCTCATACCGTCTGGCAGCAACCACGCTCTCCGATTTCATGACATGGGTGGGTTCCTTCAGTGCATTATTAGTTTCTTCATATCTGAATTTTTGTTTTGCAGTGGAGCTCTCCTTCTTCAGATTGAAATGCGAATTAGTAAACTACCAAAAAAATGGTTATATTATGATAAACTATTGATCAGTTGACCAATTTTCGACATCTTTCAAGAAAACCAAGATAAGTGAGCTCAAAGTGAAGGGATAAAATATAATTCTAGTAGAGCATTCATGGTTTGTCGAAATGAAACATCATGCTGTTTCACCTCCGACCGGAAAAATTCCGAGAAATACGTTAGACAGATTTTTTCGGAACCGATTTTCGATCGGAATATCTTGAGCGGGAACATTTTTTGAGTTTTCGAAATTTCTCCTAATTTTTCGAAATCGGAAAATTCGGAAATTCCGAATTTTTCGAAATCCTAAGAATCAAAAATTCCTCGAACACATAATTTTAGGATGCATTATTTTTATTCGAACTGAAAAATTATAATGTTCATGCTTGTAGATCTCCTACTACTTGTCTTGACCCTTCCTTCTTTTTTGTGTTCACCGGAGACCCCCTACCGCTCAAGCTACTCTGTTCTGTTCATCCGATGGGCGGCAAAAAAAGAGCTGACCCCAGCGGTAAGTTCCAAGGGAGTAACACTTTACCAGTGCAACAGACGGGTAATGTTTATAGTATCACGCGATTATGATGACTCATTGGCTCCTCCCCTCTCCACCACATCCTAATATCTGCGGGCTTTGTTTCTCATTCATTTTTCATTCTCCAATCACAACAAGTATTCTGAATTTGAAGTATAACCCATGTCGGATCCCACCTACGTTCTCGCCTACGTCTCGGAGAAACGCGAGGATGGGTTTCTCTTGTGTCTACAGGACACGGAAGCGACCGCAGTTATCTCCAAGTGAGTTTGCTATTTGATTACTGTATTTATTTTAA</canonical>
            <polymorphic>CTCTGAAGAAGGATGGCTCTCATACCGTCTGGCAGCAACCACGCTCTCCGATTTCATGACATGGGTGGGTTCCTTCAGTGCATTATTAGTTTCTTCATATCTGAATTTTTGTTTTGCAGTGGAGCTCTCCTTCTTCAGATTGAAATGCGAATTAGTAAACTACCAAAAAAATGGTTATATTATGATAAACTATTGATCAGTTGACCAATTTTCGACATCTTTCAAGAAAACCAAGATAAGTGAGCTCAAAGTGAAGGGATAAAATATAATTCTAGTAGAGCATTCATGGTTTGTCGAAATGAAACATCATGCTGTTTCACCTCCGACCGGAAAAATTCCGAGAAATACGTTAGACAGATTTTTTCGGAACCGATTTTCGATCGGAATATCTTGAGCGGGAACATTTTTTGAGTTTTCGAAATTTCTCCTAATTTTTCGAAATCGGAAAATTCGGAAATTCCGAATTTTTCGAAATCCTAAGAATCAAAAATTCCTCGAAYACATAATTTTAGGATGCATTATTTTTATTCGAACTGAAAAATTATAATGTTCATGCTTGTAGATCTCCTACTACTTGTCTTGACCCTTCCTTCTTTTTTGTGTTCACCGGAGACCCCCTACCGCTCAAGCTACTCTGTTCTGTTCATCCGATGGGCGGCAAAAAAAGAGCTGACCCCAGCGGTAAGTTCCAAGGGAGTAACACTTTACCAGTGCAACAGACGGGTAATGTTTATAGTATCACGCGATTATGATGACTCATTGGCTCCTCCCCTCTCCACCACATCCTAATATCTGCGGGCTTTGTTTCTCATTCATTTTTCATTCTCCAATCACAACAAGTATTCTGAATTTGAAGTATAACCCATGTCGGATCCCACCTACGTTCTCGCCTACGTCTCGGAGAAACGCGAGGATGGGTTTCTCTTGTGTCTACAGGACACGGAAGCGACCGCAGTTATCTCCAAGTGAGTTTGCTATTTGATTACTGTATTTATTTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>182 121 101 96 66 52 52 44 41 41 37 32 28 28 26 13 11 11 11 4 3</canonical_bands>
                <polymorphic_bands>283 121 96 66 52 52 44 41 41 37 32 28 28 26 13 11 11 11 4 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTGTCGAAATGAAACATCA</pcr_primer_p1>
		<pcr_primer_p2>GTAGGAGATCTACAAGCATGAAC</pcr_primer_p2>
		<pcr_amplicon_size>283</pcr_amplicon_size>
		<canonical_amplicon>GTTTGTCGAAATGAAACATCATGCTGTTTCACCTCCGACCGGAAAAATTCCGAGAAATACGTTAGACAGATTTTTTCGGAACCGATTTTCGATCGGAATATCTTGAGCGGGAACATTTTTTGAGTTTTCGAAATTTCTCCTAATTTTTCGAAATCGGAAAATTCGGAAATTCCGAATTTTTCGAAATCCTAAGAATCAAAAATTCCTCGAACACATAATTTTAGGATGCATTATTTTTATTCGAACTGAAAAATTATAATGTTCATGCTTGTAGATCTCCTAC</canonical_amplicon>
		<polymorphic_amplicon>GTTTGTCGAAATGAAACATCATGCTGTTTCACCTCCGACCGGAAAAATTCCGAGAAATACGTTAGACAGATTTTTTCGGAACCGATTTTCGATCGGAATATCTTGAGCGGGAACATTTTTTGAGTTTTCGAAATTTCTCCTAATTTTTCGAAATCGGAAAATTCGGAAATTCCGAATTTTTCGAAATCCTAAGAATCAAAAATTCCTCGAAYACATAATTTTAGGATGCATTATTTTTATTCGAACTGAAAAATTATAATGTTCATGCTTGTAGATCTCCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27177</snp_id>
        <super_contig>c002901202.Contig1</super_contig>
        <contig_pos>7026</contig_pos>
        <strand>+</strand>
        <context>TTCCTCGAAY[A/C]CATAATTTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCGGAAATTCCGAATTTTTCGAAATCCTAAGAATCAAAAATTCCTCGAAC</left_flank>
        <right_flank>CATAATTTTAGGATGCATTATTTTTATTCGAACTGAAAAATTATAATGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGAAGAAGGATGGCTCTCATACCGTCTGGCAGCAACCACGCTCTCCGATTTCATGACATGGGTGGGTTCCTTCAGTGCATTATTAGTTTCTTCATATCTGAATTTTTGTTTTGCAGTGGAGCTCTCCTTCTTCAGATTGAAATGCGAATTAGTAAACTACCAAAAAAATGGTTATATTATGATAAACTATTGATCAGTTGACCAATTTTCGACATCTTTCAAGAAAACCAAGATAAGTGAGCTCAAAGTGAAGGGATAAAATATAATTCTAGTAGAGCATTCATGGTTTGTCGAAATGAAACATCATGCTGTTTCACCTCCGACCGGAAAAATTCCGAGAAATACGTTAGACAGATTTTTTCGGAACCGATTTTCGATCGGAATATCTTGAGCGGGAACATTTTTTGAGTTTTCGAAATTTCTCCTAATTTTTCGAAATCGGAAAATTCGGAAATTCCGAATTTTTCGAAATCCTAAGAATCAAAAATTCCTCGAACACATAATTTTAGGATGCATTATTTTTATTCGAACTGAAAAATTATAATGTTCATGCTTGTAGATCTCCTACTACTTGTCTTGACCCTTCCTTCTTTTTTGTGTTCACCGGAGACCCCCTACCGCTCAAGCTACTCTGTTCTGTTCATCCGATGGGCGGCAAAAAAAGAGCTGACCCCAGCGGTAAGTTCCAAGGGAGTAACACTTTACCAGTGCAACAGACGGGTAATGTTTATAGTATCACGCGATTATGATGACTCATTGGCTCCTCCCCTCTCCACCACATCCTAATATCTGCGGGCTTTGTTTCTCATTCATTTTTCATTCTCCAATCACAACAAGTATTCTGAATTTGAAGTATAACCCATGTCGGATCCCACCTACGTTCTCGCCTACGTCTCGGAGAAACGCGAGGATGGGTTTCTCTTGTGTCTACAGGACACGGAAGCGACCGCAGTTATCTCCAAGTGAGTTTGCTATTTGATTACTGTATTTATTTTAAT</canonical>
            <polymorphic>TCTGAAGAAGGATGGCTCTCATACCGTCTGGCAGCAACCACGCTCTCCGATTTCATGACATGGGTGGGTTCCTTCAGTGCATTATTAGTTTCTTCATATCTGAATTTTTGTTTTGCAGTGGAGCTCTCCTTCTTCAGATTGAAATGCGAATTAGTAAACTACCAAAAAAATGGTTATATTATGATAAACTATTGATCAGTTGACCAATTTTCGACATCTTTCAAGAAAACCAAGATAAGTGAGCTCAAAGTGAAGGGATAAAATATAATTCTAGTAGAGCATTCATGGTTTGTCGAAATGAAACATCATGCTGTTTCACCTCCGACCGGAAAAATTCCGAGAAATACGTTAGACAGATTTTTTCGGAACCGATTTTCGATCGGAATATCTTGAGCGGGAACATTTTTTGAGTTTTCGAAATTTCTCCTAATTTTTCGAAATCGGAAAATTCGGAAATTCCGAATTTTTCGAAATCCTAAGAATCAAAAATTCCTCGAACMCATAATTTTAGGATGCATTATTTTTATTCGAACTGAAAAATTATAATGTTCATGCTTGTAGATCTCCTACTACTTGTCTTGACCCTTCCTTCTTTTTTGTGTTCACCGGAGACCCCCTACCGCTCAAGCTACTCTGTTCTGTTCATCCGATGGGCGGCAAAAAAAGAGCTGACCCCAGCGGTAAGTTCCAAGGGAGTAACACTTTACCAGTGCAACAGACGGGTAATGTTTATAGTATCACGCGATTATGATGACTCATTGGCTCCTCCCCTCTCCACCACATCCTAATATCTGCGGGCTTTGTTTCTCATTCATTTTTCATTCTCCAATCACAACAAGTATTCTGAATTTGAAGTATAACCCATGTCGGATCCCACCTACGTTCTCGCCTACGTCTCGGAGAAACGCGAGGATGGGTTTCTCTTGTGTCTACAGGACACGGAAGCGACCGCAGTTATCTCCAAGTGAGTTTGCTATTTGATTACTGTATTTATTTTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>182 121 101 96 66 52 52 44 41 40 37 33 28 28 26 13 11 11 11 4 3</canonical_bands>
                <polymorphic_bands>283 121 96 66 52 52 44 41 40 37 33 28 28 26 13 11 11 11 4 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTGTCGAAATGAAACATCA</pcr_primer_p1>
		<pcr_primer_p2>GTAGGAGATCTACAAGCATGAAC</pcr_primer_p2>
		<pcr_amplicon_size>283</pcr_amplicon_size>
		<canonical_amplicon>GTTTGTCGAAATGAAACATCATGCTGTTTCACCTCCGACCGGAAAAATTCCGAGAAATACGTTAGACAGATTTTTTCGGAACCGATTTTCGATCGGAATATCTTGAGCGGGAACATTTTTTGAGTTTTCGAAATTTCTCCTAATTTTTCGAAATCGGAAAATTCGGAAATTCCGAATTTTTCGAAATCCTAAGAATCAAAAATTCCTCGAACACATAATTTTAGGATGCATTATTTTTATTCGAACTGAAAAATTATAATGTTCATGCTTGTAGATCTCCTAC</canonical_amplicon>
		<polymorphic_amplicon>GTTTGTCGAAATGAAACATCATGCTGTTTCACCTCCGACCGGAAAAATTCCGAGAAATACGTTAGACAGATTTTTTCGGAACCGATTTTCGATCGGAATATCTTGAGCGGGAACATTTTTTGAGTTTTCGAAATTTCTCCTAATTTTTCGAAATCGGAAAATTCGGAAATTCCGAATTTTTCGAAATCCTAAGAATCAAAAATTCCTCGAACMCATAATTTTAGGATGCATTATTTTTATTCGAACTGAAAAATTATAATGTTCATGCTTGTAGATCTCCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27178</snp_id>
        <super_contig>c002901202.Contig1</super_contig>
        <contig_pos>7070</contig_pos>
        <strand>+</strand>
        <context>TGAAAAATTA[A/T]AATGTTCATG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGAACACATAATTTTAGGATGCATTATTTTTATTCGAACTGAAAAATTA</left_flank>
        <right_flank>AATGTTCATGCTTGTAGATCTCCTACTACTTGTCTTGACCCTTCCTTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCGATTTCATGACATGGGTGGGTTCCTTCAGTGCATTATTAGTTTCTTCATATCTGAATTTTTGTTTTGCAGTGGAGCTCTCCTTCTTCAGATTGAAATGCGAATTAGTAAACTACCAAAAAAATGGTTATATTATGATAAACTATTGATCAGTTGACCAATTTTCGACATCTTTCAAGAAAACCAAGATAAGTGAGCTCAAAGTGAAGGGATAAAATATAATTCTAGTAGAGCATTCATGGTTTGTCGAAATGAAACATCATGCTGTTTCACCTCCGACCGGAAAAATTCCGAGAAATACGTTAGACAGATTTTTTCGGAACCGATTTTCGATCGGAATATCTTGAGCGGGAACATTTTTTGAGTTTTCGAAATTTCTCCTAATTTTTCGAAATCGGAAAATTCGGAAATTCCGAATTTTTCGAAATCCTAAGAATCAAAAATTCCTCGAACACATAATTTTAGGATGCATTATTTTTATTCGAACTGAAAAATTATAATGTTCATGCTTGTAGATCTCCTACTACTTGTCTTGACCCTTCCTTCTTTTTTGTGTTCACCGGAGACCCCCTACCGCTCAAGCTACTCTGTTCTGTTCATCCGATGGGCGGCAAAAAAAGAGCTGACCCCAGCGGTAAGTTCCAAGGGAGTAACACTTTACCAGTGCAACAGACGGGTAATGTTTATAGTATCACGCGATTATGATGACTCATTGGCTCCTCCCCTCTCCACCACATCCTAATATCTGCGGGCTTTGTTTCTCATTCATTTTTCATTCTCCAATCACAACAAGTATTCTGAATTTGAAGTATAACCCATGTCGGATCCCACCTACGTTCTCGCCTACGTCTCGGAGAAACGCGAGGATGGGTTTCTCTTGTGTCTACAGGACACGGAAGCGACCGCAGTTATCTCCAAGTGAGTTTGCTATTTGATTACTGTATTTATTTTAATAAAAGCCCCTCTATCCGAATGCAACTTTGAATAGAAGCCTACCA</canonical>
            <polymorphic>CTCCGATTTCATGACATGGGTGGGTTCCTTCAGTGCATTATTAGTTTCTTCATATCTGAATTTTTGTTTTGCAGTGGAGCTCTCCTTCTTCAGATTGAAATGCGAATTAGTAAACTACCAAAAAAATGGTTATATTATGATAAACTATTGATCAGTTGACCAATTTTCGACATCTTTCAAGAAAACCAAGATAAGTGAGCTCAAAGTGAAGGGATAAAATATAATTCTAGTAGAGCATTCATGGTTTGTCGAAATGAAACATCATGCTGTTTCACCTCCGACCGGAAAAATTCCGAGAAATACGTTAGACAGATTTTTTCGGAACCGATTTTCGATCGGAATATCTTGAGCGGGAACATTTTTTGAGTTTTCGAAATTTCTCCTAATTTTTCGAAATCGGAAAATTCGGAAATTCCGAATTTTTCGAAATCCTAAGAATCAAAAATTCCTCGAACACATAATTTTAGGATGCATTATTTTTATTCGAACTGAAAAATTAWAATGTTCATGCTTGTAGATCTCCTACTACTTGTCTTGACCCTTCCTTCTTTTTTGTGTTCACCGGAGACCCCCTACCGCTCAAGCTACTCTGTTCTGTTCATCCGATGGGCGGCAAAAAAAGAGCTGACCCCAGCGGTAAGTTCCAAGGGAGTAACACTTTACCAGTGCAACAGACGGGTAATGTTTATAGTATCACGCGATTATGATGACTCATTGGCTCCTCCCCTCTCCACCACATCCTAATATCTGCGGGCTTTGTTTCTCATTCATTTTTCATTCTCCAATCACAACAAGTATTCTGAATTTGAAGTATAACCCATGTCGGATCCCACCTACGTTCTCGCCTACGTCTCGGAGAAACGCGAGGATGGGTTTCTCTTGTGTCTACAGGACACGGAAGCGACCGCAGTTATCTCCAAGTGAGTTTGCTATTTGATTACTGTATTTATTTTAATAAAAGCCCCTCTATCCGAATGCAACTTTGAATAGAAGCCTACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATCATGCTGTTTCACCTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAGAAGGAAGGGTCAAGA</pcr_primer_p2>
		<pcr_amplicon_size>294</pcr_amplicon_size>
		<canonical_amplicon>ACATCATGCTGTTTCACCTCCGACCGGAAAAATTCCGAGAAATACGTTAGACAGATTTTTTCGGAACCGATTTTCGATCGGAATATCTTGAGCGGGAACATTTTTTGAGTTTTCGAAATTTCTCCTAATTTTTCGAAATCGGAAAATTCGGAAATTCCGAATTTTTCGAAATCCTAAGAATCAAAAATTCCTCGAACACATAATTTTAGGATGCATTATTTTTATTCGAACTGAAAAATTATAATGTTCATGCTTGTAGATCTCCTACTACTTGTCTTGACCCTTCCTTCTTTT</canonical_amplicon>
		<polymorphic_amplicon>ACATCATGCTGTTTCACCTCCGACCGGAAAAATTCCGAGAAATACGTTAGACAGATTTTTTCGGAACCGATTTTCGATCGGAATATCTTGAGCGGGAACATTTTTTGAGTTTTCGAAATTTCTCCTAATTTTTCGAAATCGGAAAATTCGGAAATTCCGAATTTTTCGAAATCCTAAGAATCAAAAATTCCTCGAACACATAATTTTAGGATGCATTATTTTTATTCGAACTGAAAAATTAWAATGTTCATGCTTGTAGATCTCCTACTACTTGTCTTGACCCTTCCTTCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27179</snp_id>
        <super_contig>c002901207.Contig2</super_contig>
        <contig_pos>1188</contig_pos>
        <strand></strand>
        <context>tcaaaaagtg[A/G]tmaactgaca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAACTTTGAATCAATTTATCTCGGTTACTGTAGTAGATATCAAAAAGTG</left_flank>
        <right_flank>TCAACTGACAAAATGTTTATCTGAATATCAGTGACATTTTATCAGTTCAC</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAAAGAGTGTAAGGGTTGGAGAAGAATGTGAGTCGTGGCGAGGGTCATACCTTTCTCCGGTCAGGGGTCCGGATTTCTAGAGGAGGGGGAAGTTGCCTGGTGCATCTACCCTCCAACCCCTTCTAAAGGTTCCCTCTACCCACGCAACGACACTCCGCTATCCCGCTCGGCGCGCGCACAGTTTAAATTTAGTTTTTGAGGATTGCGAGCTTGGATTTGGCTCGTGGTTGTTCTAGGGACTCTTTTAAGGATTTCAAGTGAGTTTGCTTGAATTCTAAGCTTTTATTTGTTGTTTCTTTTTAACTTGTTCATAATAAACCGATTTTGTTACATTTCTTGTTGATTTTCTTCTATTTTATCACAGGAACCTGATACCCCGGACATACCGCGGGCAATTAATTGGCTCAGAGTTGAGAGACTGCCGCGTTGCTCAGCGAGCGCCGCCTTTTAAACTTTGAATCAATTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCAACTGACAAAATGTTTATCTGAATATCAGTGACATTTTATCAGTTCACTACTTTTCAATATTTTTGACATGAAATGAGTTAAATTGGCTCAAAGTTGAGAGGTCGTCGCTTGCCGGCCTCTCAACTTTGGGCTAGCTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCGACTGATAAGATATAGGAAATGTTATGATAAATATTTTATCAGTAAACTACTTTTTGATATCTTTCTTAGGAAGCGAAATAAATTGCCTCAAAAATTTTTTTGAAAAAAATATTTCTGAAAATTTGAGTTTTGGACATTTTCAAGGTCCCATATCTCATACCAAACATGATCAATTCTTAACAAAAATATATTATTAAATAGGAAATTTCATATGGATAATTTTCATATTTCAAATTTTTCAAGAATTGCAGTCATGAGGTTTACTAGAGCGCAATTACTGACACAATGCTATTCTGAAACCAAAAAATGTCATAACTCGGCTCA</canonical>
            <polymorphic>GCAAAGAGTGTAAGGGTTGGAGAAGAATGTGAGTCGTGGCGAGGGTCATACCTTTCTCCGGTCAGGGGTCCGGATTTCTAGAGGAGGGGGAAGTTGCCTGGTGCATCTACCCTCCAACCCCTTCTAAAGGTTCCCTCTACCCACGCAACGACACTCCGCTATCCCGCTCGGCGCGCGCACAGTTTAAATTTAGTTTTTGAGGATTGCGAGCTTGGATTTGGCTCGTGGTTGTTCTAGGGACTCTTTTAAGGATTTCAAGTGAGTTTGCTTGAATTCTAAGCTTTTATTTGTTGTTTCTTTTTAACTTGTTCATAATAAACCGATTTTGTTACATTTCTTGTTGATTTTCTTCTATTTTATCACAGGAACCTGATACCCCGGACATACCGCGGGCAATTAATTGGCTCAGAGTTGAGAGACTGCCGCGTTGCTCAGCGAGCGCCGCCTTTTAAACTTTGAATCAATTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGRTCAACTGACAAAATGTTTATCTGAATATCAGTGACATTTTATCAGTTCACTACTTTTCAATATTTTTGACATGAAATGAGTTAAATTGGCTCAAAGTTGAGAGGTCGTCGCTTGCCGGCCTCTCAACTTTGGGCTAGCTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCGACTGATAAGATATAGGAAATGTTATGATAAATATTTTATCAGTAAACTACTTTTTGATATCTTTCTTAGGAAGCGAAATAAATTGCCTCAAAAATTTTTTTGAAAAAAATATTTCTGAAAATTTGAGTTTTGGACATTTTCAAGGTCCCATATCTCATACCAAACATGATCAATTCTTAACAAAAATATATTATTAAATAGGAAATTTCATATGGATAATTTTCATATTTCAAATTTTTCAAGAATTGCAGTCATGAGGTTTACTAGAGCGCAATTACTGACACAATGCTATTCTGAAACCAAAAAATGTCATAACTCGGCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>498 345 157</canonical_bands>
                <polymorphic_bands>843 157</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>498 173 172 157</canonical_bands>
                <polymorphic_bands>671 172 157</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGCTCAGAGTTGAGAGACT</pcr_primer_p1>
		<pcr_primer_p2>TGAAAATGTCCAAAACTCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>417</pcr_amplicon_size>
		<canonical_amplicon>TGGCTCAGAGTTGAGAGACTGCCGCGTTGCTCAGCGAGCGCCGCCTTTTAAACTTTGAATCAATTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCAACTGACAAAATGTTTATCTGAATATCAGTGACATTTTATCAGTTCACTACTTTTCAATATTTTTGACATGAAATGAGTTAAATTGGCTCAAAGTTGAGAGGTCGTCGCTTGCCGGCCTCTCAACTTTGGGCTAGCTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCGACTGATAAGATATAGGAAATGTTATGATAAATATTTTATCAGTAAACTACTTTTTGATATCTTTCTTAGGAAGCGAAATAAATTGCCTCAAAAATTTTTTTGAAAAAAATATTTCTGAAAATTTGAGTTTTGGACATTTTCA</canonical_amplicon>
		<polymorphic_amplicon>TGGCTCAGAGTTGAGAGACTGCCGCGTTGCTCAGCGAGCGCCGCCTTTTAAACTTTGAATCAATTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGRTCAACTGACAAAATGTTTATCTGAATATCAGTGACATTTTATCAGTTCACTACTTTTCAATATTTTTGACATGAAATGAGTTAAATTGGCTCAAAGTTGAGAGGTCGTCGCTTGCCGGCCTCTCAACTTTGGGCTAGCTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCGACTGATAAGATATAGGAAATGTTATGATAAATATTTTATCAGTAAACTACTTTTTGATATCTTTCTTAGGAAGCGAAATAAATTGCCTCAAAAATTTTTTTGAAAAAAATATTTCTGAAAATTTGAGTTTTGGACATTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27180</snp_id>
        <super_contig>c002901207.Contig2</super_contig>
        <contig_pos>1190</contig_pos>
        <strand></strand>
        <context>aaaaagtgrt[C/A]aactgacaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AACTTTGAATCAATTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGAT</left_flank>
        <right_flank>AACTGACAAAATGTTTATCTGAATATCAGTGACATTTTATCAGTTCACTA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGAGTGTAAGGGTTGGAGAAGAATGTGAGTCGTGGCGAGGGTCATACCTTTCTCCGGTCAGGGGTCCGGATTTCTAGAGGAGGGGGAAGTTGCCTGGTGCATCTACCCTCCAACCCCTTCTAAAGGTTCCCTCTACCCACGCAACGACACTCCGCTATCCCGCTCGGCGCGCGCACAGTTTAAATTTAGTTTTTGAGGATTGCGAGCTTGGATTTGGCTCGTGGTTGTTCTAGGGACTCTTTTAAGGATTTCAAGTGAGTTTGCTTGAATTCTAAGCTTTTATTTGTTGTTTCTTTTTAACTTGTTCATAATAAACCGATTTTGTTACATTTCTTGTTGATTTTCTTCTATTTTATCACAGGAACCTGATACCCCGGACATACCGCGGGCAATTAATTGGCTCAGAGTTGAGAGACTGCCGCGTTGCTCAGCGAGCGCCGCCTTTTAAACTTTGAATCAATTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCAACTGACAAAATGTTTATCTGAATATCAGTGACATTTTATCAGTTCACTACTTTTCAATATTTTTGACATGAAATGAGTTAAATTGGCTCAAAGTTGAGAGGTCGTCGCTTGCCGGCCTCTCAACTTTGGGCTAGCTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCGACTGATAAGATATAGGAAATGTTATGATAAATATTTTATCAGTAAACTACTTTTTGATATCTTTCTTAGGAAGCGAAATAAATTGCCTCAAAAATTTTTTTGAAAAAAATATTTCTGAAAATTTGAGTTTTGGACATTTTCAAGGTCCCATATCTCATACCAAACATGATCAATTCTTAACAAAAATATATTATTAAATAGGAAATTTCATATGGATAATTTTCATATTTCAAATTTTTCAAGAATTGCAGTCATGAGGTTTACTAGAGCGCAATTACTGACACAATGCTATTCTGAAACCAAAAAATGTCATAACTCGGCTCAAA</canonical>
            <polymorphic>AAAGAGTGTAAGGGTTGGAGAAGAATGTGAGTCGTGGCGAGGGTCATACCTTTCTCCGGTCAGGGGTCCGGATTTCTAGAGGAGGGGGAAGTTGCCTGGTGCATCTACCCTCCAACCCCTTCTAAAGGTTCCCTCTACCCACGCAACGACACTCCGCTATCCCGCTCGGCGCGCGCACAGTTTAAATTTAGTTTTTGAGGATTGCGAGCTTGGATTTGGCTCGTGGTTGTTCTAGGGACTCTTTTAAGGATTTCAAGTGAGTTTGCTTGAATTCTAAGCTTTTATTTGTTGTTTCTTTTTAACTTGTTCATAATAAACCGATTTTGTTACATTTCTTGTTGATTTTCTTCTATTTTATCACAGGAACCTGATACCCCGGACATACCGCGGGCAATTAATTGGCTCAGAGTTGAGAGACTGCCGCGTTGCTCAGCGAGCGCCGCCTTTTAAACTTTGAATCAATTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATMAACTGACAAAATGTTTATCTGAATATCAGTGACATTTTATCAGTTCACTACTTTTCAATATTTTTGACATGAAATGAGTTAAATTGGCTCAAAGTTGAGAGGTCGTCGCTTGCCGGCCTCTCAACTTTGGGCTAGCTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCGACTGATAAGATATAGGAAATGTTATGATAAATATTTTATCAGTAAACTACTTTTTGATATCTTTCTTAGGAAGCGAAATAAATTGCCTCAAAAATTTTTTTGAAAAAAATATTTCTGAAAATTTGAGTTTTGGACATTTTCAAGGTCCCATATCTCATACCAAACATGATCAATTCTTAACAAAAATATATTATTAAATAGGAAATTTCATATGGATAATTTTCATATTTCAAATTTTTCAAGAATTGCAGTCATGAGGTTTACTAGAGCGCAATTACTGACACAATGCTATTCTGAAACCAAAAAATGTCATAACTCGGCTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>496 345 159</canonical_bands>
                <polymorphic_bands>841 159</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>496 173 172 159</canonical_bands>
                <polymorphic_bands>669 172 159</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGCTCAGAGTTGAGAGACT</pcr_primer_p1>
		<pcr_primer_p2>TGAAAATGTCCAAAACTCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>417</pcr_amplicon_size>
		<canonical_amplicon>TGGCTCAGAGTTGAGAGACTGCCGCGTTGCTCAGCGAGCGCCGCCTTTTAAACTTTGAATCAATTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCAACTGACAAAATGTTTATCTGAATATCAGTGACATTTTATCAGTTCACTACTTTTCAATATTTTTGACATGAAATGAGTTAAATTGGCTCAAAGTTGAGAGGTCGTCGCTTGCCGGCCTCTCAACTTTGGGCTAGCTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCGACTGATAAGATATAGGAAATGTTATGATAAATATTTTATCAGTAAACTACTTTTTGATATCTTTCTTAGGAAGCGAAATAAATTGCCTCAAAAATTTTTTTGAAAAAAATATTTCTGAAAATTTGAGTTTTGGACATTTTCA</canonical_amplicon>
		<polymorphic_amplicon>TGGCTCAGAGTTGAGAGACTGCCGCGTTGCTCAGCGAGCGCCGCCTTTTAAACTTTGAATCAATTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATMAACTGACAAAATGTTTATCTGAATATCAGTGACATTTTATCAGTTCACTACTTTTCAATATTTTTGACATGAAATGAGTTAAATTGGCTCAAAGTTGAGAGGTCGTCGCTTGCCGGCCTCTCAACTTTGGGCTAGCTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCGACTGATAAGATATAGGAAATGTTATGATAAATATTTTATCAGTAAACTACTTTTTGATATCTTTCTTAGGAAGCGAAATAAATTGCCTCAAAAATTTTTTTGAAAAAAATATTTCTGAAAATTTGAGTTTTGGACATTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27181</snp_id>
        <super_contig>c002901207.Contig2</super_contig>
        <contig_pos>1213</contig_pos>
        <strand></strand>
        <context>gtttatctga[A/G]tatcagtgac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTACTGTAGTAGATATCAAAAAGTGATCAACTGACAAAATGTTTATCTGA</left_flank>
        <right_flank>TATCAGTGACATTTTATCAGTTCACTACTTTTCAATATTTTTGACATGAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGTGAGTCGTGGCGAGGGTCATACCTTTCTCCGGTCAGGGGTCCGGATTTCTAGAGGAGGGGGAAGTTGCCTGGTGCATCTACCCTCCAACCCCTTCTAAAGGTTCCCTCTACCCACGCAACGACACTCCGCTATCCCGCTCGGCGCGCGCACAGTTTAAATTTAGTTTTTGAGGATTGCGAGCTTGGATTTGGCTCGTGGTTGTTCTAGGGACTCTTTTAAGGATTTCAAGTGAGTTTGCTTGAATTCTAAGCTTTTATTTGTTGTTTCTTTTTAACTTGTTCATAATAAACCGATTTTGTTACATTTCTTGTTGATTTTCTTCTATTTTATCACAGGAACCTGATACCCCGGACATACCGCGGGCAATTAATTGGCTCAGAGTTGAGAGACTGCCGCGTTGCTCAGCGAGCGCCGCCTTTTAAACTTTGAATCAATTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCAACTGACAAAATGTTTATCTGAATATCAGTGACATTTTATCAGTTCACTACTTTTCAATATTTTTGACATGAAATGAGTTAAATTGGCTCAAAGTTGAGAGGTCGTCGCTTGCCGGCCTCTCAACTTTGGGCTAGCTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCGACTGATAAGATATAGGAAATGTTATGATAAATATTTTATCAGTAAACTACTTTTTGATATCTTTCTTAGGAAGCGAAATAAATTGCCTCAAAAATTTTTTTGAAAAAAATATTTCTGAAAATTTGAGTTTTGGACATTTTCAAGGTCCCATATCTCATACCAAACATGATCAATTCTTAACAAAAATATATTATTAAATAGGAAATTTCATATGGATAATTTTCATATTTCAAATTTTTCAAGAATTGCAGTCATGAGGTTTACTAGAGCGCAATTACTGACACAATGCTATTCTGAAACCAAAAAATGTCATAACTCGGCTCAAAATTATCCGATTTTTATAGTATCA</canonical>
            <polymorphic>AATGTGAGTCGTGGCGAGGGTCATACCTTTCTCCGGTCAGGGGTCCGGATTTCTAGAGGAGGGGGAAGTTGCCTGGTGCATCTACCCTCCAACCCCTTCTAAAGGTTCCCTCTACCCACGCAACGACACTCCGCTATCCCGCTCGGCGCGCGCACAGTTTAAATTTAGTTTTTGAGGATTGCGAGCTTGGATTTGGCTCGTGGTTGTTCTAGGGACTCTTTTAAGGATTTCAAGTGAGTTTGCTTGAATTCTAAGCTTTTATTTGTTGTTTCTTTTTAACTTGTTCATAATAAACCGATTTTGTTACATTTCTTGTTGATTTTCTTCTATTTTATCACAGGAACCTGATACCCCGGACATACCGCGGGCAATTAATTGGCTCAGAGTTGAGAGACTGCCGCGTTGCTCAGCGAGCGCCGCCTTTTAAACTTTGAATCAATTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCAACTGACAAAATGTTTATCTGARTATCAGTGACATTTTATCAGTTCACTACTTTTCAATATTTTTGACATGAAATGAGTTAAATTGGCTCAAAGTTGAGAGGTCGTCGCTTGCCGGCCTCTCAACTTTGGGCTAGCTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCGACTGATAAGATATAGGAAATGTTATGATAAATATTTTATCAGTAAACTACTTTTTGATATCTTTCTTAGGAAGCGAAATAAATTGCCTCAAAAATTTTTTTGAAAAAAATATTTCTGAAAATTTGAGTTTTGGACATTTTCAAGGTCCCATATCTCATACCAAACATGATCAATTCTTAACAAAAATATATTATTAAATAGGAAATTTCATATGGATAATTTTCATATTTCAAATTTTTCAAGAATTGCAGTCATGAGGTTTACTAGAGCGCAATTACTGACACAATGCTATTCTGAAACCAAAAAATGTCATAACTCGGCTCAAAATTATCCGATTTTTATAGTATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGCTCAGAGTTGAGAGACT</pcr_primer_p1>
		<pcr_primer_p2>TGAAAATGTCCAAAACTCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>417</pcr_amplicon_size>
		<canonical_amplicon>TGGCTCAGAGTTGAGAGACTGCCGCGTTGCTCAGCGAGCGCCGCCTTTTAAACTTTGAATCAATTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCAACTGACAAAATGTTTATCTGAATATCAGTGACATTTTATCAGTTCACTACTTTTCAATATTTTTGACATGAAATGAGTTAAATTGGCTCAAAGTTGAGAGGTCGTCGCTTGCCGGCCTCTCAACTTTGGGCTAGCTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCGACTGATAAGATATAGGAAATGTTATGATAAATATTTTATCAGTAAACTACTTTTTGATATCTTTCTTAGGAAGCGAAATAAATTGCCTCAAAAATTTTTTTGAAAAAAATATTTCTGAAAATTTGAGTTTTGGACATTTTCA</canonical_amplicon>
		<polymorphic_amplicon>TGGCTCAGAGTTGAGAGACTGCCGCGTTGCTCAGCGAGCGCCGCCTTTTAAACTTTGAATCAATTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCAACTGACAAAATGTTTATCTGARTATCAGTGACATTTTATCAGTTCACTACTTTTCAATATTTTTGACATGAAATGAGTTAAATTGGCTCAAAGTTGAGAGGTCGTCGCTTGCCGGCCTCTCAACTTTGGGCTAGCTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCGACTGATAAGATATAGGAAATGTTATGATAAATATTTTATCAGTAAACTACTTTTTGATATCTTTCTTAGGAAGCGAAATAAATTGCCTCAAAAATTTTTTTGAAAAAAATATTTCTGAAAATTTGAGTTTTGGACATTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27182</snp_id>
        <super_contig>c002901207.Contig2</super_contig>
        <contig_pos>1247</contig_pos>
        <strand></strand>
        <context>actacttttc[A/G]atatttttsa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAAATGTTTATCTGAATATCAGTGACATTTTATCAGTTCACTACTTTTC</left_flank>
        <right_flank>ATATTTTTGACATGAAATGAGTTAAATTGGCTCAAAGTTGAGAGGTCGTC</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTCAGGGGTCCGGATTTCTAGAGGAGGGGGAAGTTGCCTGGTGCATCTACCCTCCAACCCCTTCTAAAGGTTCCCTCTACCCACGCAACGACACTCCGCTATCCCGCTCGGCGCGCGCACAGTTTAAATTTAGTTTTTGAGGATTGCGAGCTTGGATTTGGCTCGTGGTTGTTCTAGGGACTCTTTTAAGGATTTCAAGTGAGTTTGCTTGAATTCTAAGCTTTTATTTGTTGTTTCTTTTTAACTTGTTCATAATAAACCGATTTTGTTACATTTCTTGTTGATTTTCTTCTATTTTATCACAGGAACCTGATACCCCGGACATACCGCGGGCAATTAATTGGCTCAGAGTTGAGAGACTGCCGCGTTGCTCAGCGAGCGCCGCCTTTTAAACTTTGAATCAATTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCAACTGACAAAATGTTTATCTGAATATCAGTGACATTTTATCAGTTCACTACTTTTCAATATTTTTGACATGAAATGAGTTAAATTGGCTCAAAGTTGAGAGGTCGTCGCTTGCCGGCCTCTCAACTTTGGGCTAGCTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCGACTGATAAGATATAGGAAATGTTATGATAAATATTTTATCAGTAAACTACTTTTTGATATCTTTCTTAGGAAGCGAAATAAATTGCCTCAAAAATTTTTTTGAAAAAAATATTTCTGAAAATTTGAGTTTTGGACATTTTCAAGGTCCCATATCTCATACCAAACATGATCAATTCTTAACAAAAATATATTATTAAATAGGAAATTTCATATGGATAATTTTCATATTTCAAATTTTTCAAGAATTGCAGTCATGAGGTTTACTAGAGCGCAATTACTGACACAATGCTATTCTGAAACCAAAAAATGTCATAACTCGGCTCAAAATTATCCGATTTTTATAGTATCATTGAATAGTCTTTTAATTTCCAGATTTTCGTAGA</canonical>
            <polymorphic>GGTCAGGGGTCCGGATTTCTAGAGGAGGGGGAAGTTGCCTGGTGCATCTACCCTCCAACCCCTTCTAAAGGTTCCCTCTACCCACGCAACGACACTCCGCTATCCCGCTCGGCGCGCGCACAGTTTAAATTTAGTTTTTGAGGATTGCGAGCTTGGATTTGGCTCGTGGTTGTTCTAGGGACTCTTTTAAGGATTTCAAGTGAGTTTGCTTGAATTCTAAGCTTTTATTTGTTGTTTCTTTTTAACTTGTTCATAATAAACCGATTTTGTTACATTTCTTGTTGATTTTCTTCTATTTTATCACAGGAACCTGATACCCCGGACATACCGCGGGCAATTAATTGGCTCAGAGTTGAGAGACTGCCGCGTTGCTCAGCGAGCGCCGCCTTTTAAACTTTGAATCAATTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCAACTGACAAAATGTTTATCTGAATATCAGTGACATTTTATCAGTTCACTACTTTTCRATATTTTTGACATGAAATGAGTTAAATTGGCTCAAAGTTGAGAGGTCGTCGCTTGCCGGCCTCTCAACTTTGGGCTAGCTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCGACTGATAAGATATAGGAAATGTTATGATAAATATTTTATCAGTAAACTACTTTTTGATATCTTTCTTAGGAAGCGAAATAAATTGCCTCAAAAATTTTTTTGAAAAAAATATTTCTGAAAATTTGAGTTTTGGACATTTTCAAGGTCCCATATCTCATACCAAACATGATCAATTCTTAACAAAAATATATTATTAAATAGGAAATTTCATATGGATAATTTTCATATTTCAAATTTTTCAAGAATTGCAGTCATGAGGTTTACTAGAGCGCAATTACTGACACAATGCTATTCTGAAACCAAAAAATGTCATAACTCGGCTCAAAATTATCCGATTTTTATAGTATCATTGAATAGTCTTTTAATTTCCAGATTTTCGTAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 273 147 78</canonical_bands>
                <polymorphic_bands>649 273 78</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGCTCAGAGTTGAGAGACT</pcr_primer_p1>
		<pcr_primer_p2>TGAAAATGTCCAAAACTCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>417</pcr_amplicon_size>
		<canonical_amplicon>TGGCTCAGAGTTGAGAGACTGCCGCGTTGCTCAGCGAGCGCCGCCTTTTAAACTTTGAATCAATTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCAACTGACAAAATGTTTATCTGAATATCAGTGACATTTTATCAGTTCACTACTTTTCAATATTTTTGACATGAAATGAGTTAAATTGGCTCAAAGTTGAGAGGTCGTCGCTTGCCGGCCTCTCAACTTTGGGCTAGCTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCGACTGATAAGATATAGGAAATGTTATGATAAATATTTTATCAGTAAACTACTTTTTGATATCTTTCTTAGGAAGCGAAATAAATTGCCTCAAAAATTTTTTTGAAAAAAATATTTCTGAAAATTTGAGTTTTGGACATTTTCA</canonical_amplicon>
		<polymorphic_amplicon>TGGCTCAGAGTTGAGAGACTGCCGCGTTGCTCAGCGAGCGCCGCCTTTTAAACTTTGAATCAATTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCAACTGACAAAATGTTTATCTGAATATCAGTGACATTTTATCAGTTCACTACTTTTCRATATTTTTGACATGAAATGAGTTAAATTGGCTCAAAGTTGAGAGGTCGTCGCTTGCCGGCCTCTCAACTTTGGGCTAGCTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCGACTGATAAGATATAGGAAATGTTATGATAAATATTTTATCAGTAAACTACTTTTTGATATCTTTCTTAGGAAGCGAAATAAATTGCCTCAAAAATTTTTTTGAAAAAAATATTTCTGAAAATTTGAGTTTTGGACATTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27183</snp_id>
        <super_contig>c002901207.Contig2</super_contig>
        <contig_pos>1256</contig_pos>
        <strand></strand>
        <context>cratattttt[G/C]acatgaaatg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TATCTGAATATCAGTGACATTTTATCAGTTCACTACTTTTCAATATTTTT</left_flank>
        <right_flank>ACATGAAATGAGTTAAATTGGCTCAAAGTTGAGAGGTCGTCGCTTGCCGG</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCGGATTTCTAGAGGAGGGGGAAGTTGCCTGGTGCATCTACCCTCCAACCCCTTCTAAAGGTTCCCTCTACCCACGCAACGACACTCCGCTATCCCGCTCGGCGCGCGCACAGTTTAAATTTAGTTTTTGAGGATTGCGAGCTTGGATTTGGCTCGTGGTTGTTCTAGGGACTCTTTTAAGGATTTCAAGTGAGTTTGCTTGAATTCTAAGCTTTTATTTGTTGTTTCTTTTTAACTTGTTCATAATAAACCGATTTTGTTACATTTCTTGTTGATTTTCTTCTATTTTATCACAGGAACCTGATACCCCGGACATACCGCGGGCAATTAATTGGCTCAGAGTTGAGAGACTGCCGCGTTGCTCAGCGAGCGCCGCCTTTTAAACTTTGAATCAATTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCAACTGACAAAATGTTTATCTGAATATCAGTGACATTTTATCAGTTCACTACTTTTCAATATTTTTGACATGAAATGAGTTAAATTGGCTCAAAGTTGAGAGGTCGTCGCTTGCCGGCCTCTCAACTTTGGGCTAGCTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCGACTGATAAGATATAGGAAATGTTATGATAAATATTTTATCAGTAAACTACTTTTTGATATCTTTCTTAGGAAGCGAAATAAATTGCCTCAAAAATTTTTTTGAAAAAAATATTTCTGAAAATTTGAGTTTTGGACATTTTCAAGGTCCCATATCTCATACCAAACATGATCAATTCTTAACAAAAATATATTATTAAATAGGAAATTTCATATGGATAATTTTCATATTTCAAATTTTTCAAGAATTGCAGTCATGAGGTTTACTAGAGCGCAATTACTGACACAATGCTATTCTGAAACCAAAAAATGTCATAACTCGGCTCAAAATTATCCGATTTTTATAGTATCATTGAATAGTCTTTTAATTTCCAGATTTTCGTAGACCATGCTCT</canonical>
            <polymorphic>TCCGGATTTCTAGAGGAGGGGGAAGTTGCCTGGTGCATCTACCCTCCAACCCCTTCTAAAGGTTCCCTCTACCCACGCAACGACACTCCGCTATCCCGCTCGGCGCGCGCACAGTTTAAATTTAGTTTTTGAGGATTGCGAGCTTGGATTTGGCTCGTGGTTGTTCTAGGGACTCTTTTAAGGATTTCAAGTGAGTTTGCTTGAATTCTAAGCTTTTATTTGTTGTTTCTTTTTAACTTGTTCATAATAAACCGATTTTGTTACATTTCTTGTTGATTTTCTTCTATTTTATCACAGGAACCTGATACCCCGGACATACCGCGGGCAATTAATTGGCTCAGAGTTGAGAGACTGCCGCGTTGCTCAGCGAGCGCCGCCTTTTAAACTTTGAATCAATTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCAACTGACAAAATGTTTATCTGAATATCAGTGACATTTTATCAGTTCACTACTTTTCAATATTTTTSACATGAAATGAGTTAAATTGGCTCAAAGTTGAGAGGTCGTCGCTTGCCGGCCTCTCAACTTTGGGCTAGCTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCGACTGATAAGATATAGGAAATGTTATGATAAATATTTTATCAGTAAACTACTTTTTGATATCTTTCTTAGGAAGCGAAATAAATTGCCTCAAAAATTTTTTTGAAAAAAATATTTCTGAAAATTTGAGTTTTGGACATTTTCAAGGTCCCATATCTCATACCAAACATGATCAATTCTTAACAAAAATATATTATTAAATAGGAAATTTCATATGGATAATTTTCATATTTCAAATTTTTCAAGAATTGCAGTCATGAGGTTTACTAGAGCGCAATTACTGACACAATGCTATTCTGAAACCAAAAAATGTCATAACTCGGCTCAAAATTATCCGATTTTTATAGTATCATTGAATAGTCTTTTAATTTCCAGATTTTCGTAGACCATGCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGCTCAGAGTTGAGAGACT</pcr_primer_p1>
		<pcr_primer_p2>TGAAAATGTCCAAAACTCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>417</pcr_amplicon_size>
		<canonical_amplicon>TGGCTCAGAGTTGAGAGACTGCCGCGTTGCTCAGCGAGCGCCGCCTTTTAAACTTTGAATCAATTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCAACTGACAAAATGTTTATCTGAATATCAGTGACATTTTATCAGTTCACTACTTTTCAATATTTTTGACATGAAATGAGTTAAATTGGCTCAAAGTTGAGAGGTCGTCGCTTGCCGGCCTCTCAACTTTGGGCTAGCTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCGACTGATAAGATATAGGAAATGTTATGATAAATATTTTATCAGTAAACTACTTTTTGATATCTTTCTTAGGAAGCGAAATAAATTGCCTCAAAAATTTTTTTGAAAAAAATATTTCTGAAAATTTGAGTTTTGGACATTTTCA</canonical_amplicon>
		<polymorphic_amplicon>TGGCTCAGAGTTGAGAGACTGCCGCGTTGCTCAGCGAGCGCCGCCTTTTAAACTTTGAATCAATTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCAACTGACAAAATGTTTATCTGAATATCAGTGACATTTTATCAGTTCACTACTTTTCAATATTTTTSACATGAAATGAGTTAAATTGGCTCAAAGTTGAGAGGTCGTCGCTTGCCGGCCTCTCAACTTTGGGCTAGCTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCGACTGATAAGATATAGGAAATGTTATGATAAATATTTTATCAGTAAACTACTTTTTGATATCTTTCTTAGGAAGCGAAATAAATTGCCTCAAAAATTTTTTTGAAAAAAATATTTCTGAAAATTTGAGTTTTGGACATTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27184</snp_id>
        <super_contig>c002901207.Contig2</super_contig>
        <contig_pos>1282</contig_pos>
        <strand></strand>
        <context>aattggctca[A/G]agttgagagG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTCACTACTTTTCAATATTTTTGACATGAAATGAGTTAAATTGGCTCA</left_flank>
        <right_flank>AGTTGAGAGGTCGTCGCTTGCCGGCCTCTCAACTTTGGGCTAGCTTATCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCCTGGTGCATCTACCCTCCAACCCCTTCTAAAGGTTCCCTCTACCCACGCAACGACACTCCGCTATCCCGCTCGGCGCGCGCACAGTTTAAATTTAGTTTTTGAGGATTGCGAGCTTGGATTTGGCTCGTGGTTGTTCTAGGGACTCTTTTAAGGATTTCAAGTGAGTTTGCTTGAATTCTAAGCTTTTATTTGTTGTTTCTTTTTAACTTGTTCATAATAAACCGATTTTGTTACATTTCTTGTTGATTTTCTTCTATTTTATCACAGGAACCTGATACCCCGGACATACCGCGGGCAATTAATTGGCTCAGAGTTGAGAGACTGCCGCGTTGCTCAGCGAGCGCCGCCTTTTAAACTTTGAATCAATTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCAACTGACAAAATGTTTATCTGAATATCAGTGACATTTTATCAGTTCACTACTTTTCAATATTTTTGACATGAAATGAGTTAAATTGGCTCAAAGTTGAGAGGTCGTCGCTTGCCGGCCTCTCAACTTTGGGCTAGCTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCGACTGATAAGATATAGGAAATGTTATGATAAATATTTTATCAGTAAACTACTTTTTGATATCTTTCTTAGGAAGCGAAATAAATTGCCTCAAAAATTTTTTTGAAAAAAATATTTCTGAAAATTTGAGTTTTGGACATTTTCAAGGTCCCATATCTCATACCAAACATGATCAATTCTTAACAAAAATATATTATTAAATAGGAAATTTCATATGGATAATTTTCATATTTCAAATTTTTCAAGAATTGCAGTCATGAGGTTTACTAGAGCGCAATTACTGACACAATGCTATTCTGAAACCAAAAAATGTCATAACTCGGCTCAAAATTATCCGATTTTTATAGTATCATTGAATAGTCTTTTAATTTCCAGATTTTCGTAGACCATGCTCTATCTCTGGAACCCAATGACCTAGATA</canonical>
            <polymorphic>TGCCTGGTGCATCTACCCTCCAACCCCTTCTAAAGGTTCCCTCTACCCACGCAACGACACTCCGCTATCCCGCTCGGCGCGCGCACAGTTTAAATTTAGTTTTTGAGGATTGCGAGCTTGGATTTGGCTCGTGGTTGTTCTAGGGACTCTTTTAAGGATTTCAAGTGAGTTTGCTTGAATTCTAAGCTTTTATTTGTTGTTTCTTTTTAACTTGTTCATAATAAACCGATTTTGTTACATTTCTTGTTGATTTTCTTCTATTTTATCACAGGAACCTGATACCCCGGACATACCGCGGGCAATTAATTGGCTCAGAGTTGAGAGACTGCCGCGTTGCTCAGCGAGCGCCGCCTTTTAAACTTTGAATCAATTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCAACTGACAAAATGTTTATCTGAATATCAGTGACATTTTATCAGTTCACTACTTTTCAATATTTTTGACATGAAATGAGTTAAATTGGCTCARAGTTGAGAGGTCGTCGCTTGCCGGCCTCTCAACTTTGGGCTAGCTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCGACTGATAAGATATAGGAAATGTTATGATAAATATTTTATCAGTAAACTACTTTTTGATATCTTTCTTAGGAAGCGAAATAAATTGCCTCAAAAATTTTTTTGAAAAAAATATTTCTGAAAATTTGAGTTTTGGACATTTTCAAGGTCCCATATCTCATACCAAACATGATCAATTCTTAACAAAAATATATTATTAAATAGGAAATTTCATATGGATAATTTTCATATTTCAAATTTTTCAAGAATTGCAGTCATGAGGTTTACTAGAGCGCAATTACTGACACAATGCTATTCTGAAACCAAAAAATGTCATAACTCGGCTCAAAATTATCCGATTTTTATAGTATCATTGAATAGTCTTTTAATTTCCAGATTTTCGTAGACCATGCTCTATCTCTGGAACCCAATGACCTAGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGCTCAGAGTTGAGAGACT</pcr_primer_p1>
		<pcr_primer_p2>TGAAAATGTCCAAAACTCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>417</pcr_amplicon_size>
		<canonical_amplicon>TGGCTCAGAGTTGAGAGACTGCCGCGTTGCTCAGCGAGCGCCGCCTTTTAAACTTTGAATCAATTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCAACTGACAAAATGTTTATCTGAATATCAGTGACATTTTATCAGTTCACTACTTTTCAATATTTTTGACATGAAATGAGTTAAATTGGCTCAAAGTTGAGAGGTCGTCGCTTGCCGGCCTCTCAACTTTGGGCTAGCTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCGACTGATAAGATATAGGAAATGTTATGATAAATATTTTATCAGTAAACTACTTTTTGATATCTTTCTTAGGAAGCGAAATAAATTGCCTCAAAAATTTTTTTGAAAAAAATATTTCTGAAAATTTGAGTTTTGGACATTTTCA</canonical_amplicon>
		<polymorphic_amplicon>TGGCTCAGAGTTGAGAGACTGCCGCGTTGCTCAGCGAGCGCCGCCTTTTAAACTTTGAATCAATTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCAACTGACAAAATGTTTATCTGAATATCAGTGACATTTTATCAGTTCACTACTTTTCAATATTTTTGACATGAAATGAGTTAAATTGGCTCARAGTTGAGAGGTCGTCGCTTGCCGGCCTCTCAACTTTGGGCTAGCTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCGACTGATAAGATATAGGAAATGTTATGATAAATATTTTATCAGTAAACTACTTTTTGATATCTTTCTTAGGAAGCGAAATAAATTGCCTCAAAAATTTTTTTGAAAAAAATATTTCTGAAAATTTGAGTTTTGGACATTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27185</snp_id>
        <super_contig>c002901207.Contig2</super_contig>
        <contig_pos>1540</contig_pos>
        <strand></strand>
        <context>ATGATCAATT[C/T]TTAACAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTTTTGGACATTTTCAAGGTCCCATATCTCATACCAAACATGATCAATT</left_flank>
        <right_flank>TTAACAAAAATATATTATTAAATAGGAAATTTCATATGGATAATTTTCAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTTATCACAGGAACCTGATACCCCGGACATACCGCGGGCAATTAATTGGCTCAGAGTTGAGAGACTGCCGCGTTGCTCAGCGAGCGCCGCCTTTTAAACTTTGAATCAATTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCAACTGACAAAATGTTTATCTGAATATCAGTGACATTTTATCAGTTCACTACTTTTCAATATTTTTGACATGAAATGAGTTAAATTGGCTCAAAGTTGAGAGGTCGTCGCTTGCCGGCCTCTCAACTTTGGGCTAGCTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCGACTGATAAGATATAGGAAATGTTATGATAAATATTTTATCAGTAAACTACTTTTTGATATCTTTCTTAGGAAGCGAAATAAATTGCCTCAAAAATTTTTTTGAAAAAAATATTTCTGAAAATTTGAGTTTTGGACATTTTCAAGGTCCCATATCTCATACCAAACATGATCAATTCTTAACAAAAATATATTATTAAATAGGAAATTTCATATGGATAATTTTCATATTTCAAATTTTTCAAGAATTGCAGTCATGAGGTTTACTAGAGCGCAATTACTGACACAATGCTATTCTGAAACCAAAAAATGTCATAACTCGGCTCAAAATTATCCGATTTTTATAGTATCATTGAATAGTCTTTTAATTTCCAGATTTTCGTAGACCATGCTCTATCTCTGGAACCCAATGACCTAGATATGTTGTACTTGAGAGGCCGCTGGTACCGAATGGTCTCTCAAATCACATGGATTCAAAGTACCAAGAGCTCCCTAATGTCGATTCCTCCCCCAGAAGGAACTCTAGATCAAGCGATTGACGACTTCAAAAAGGCTTATTTAATCGCTCCATTTTGCCAGAAAACGACAGTTTGTTTGGCGATAAGTTTGTTTGAAAAACGAGACTTTGAAACTGCGAAAATGCATTTTAAGCATATTGTACAGATGAGTAAGGAGTCAA</canonical>
            <polymorphic>TATTTTATCACAGGAACCTGATACCCCGGACATACCGCGGGCAATTAATTGGCTCAGAGTTGAGAGACTGCCGCGTTGCTCAGCGAGCGCCGCCTTTTAAACTTTGAATCAATTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCAACTGACAAAATGTTTATCTGAATATCAGTGACATTTTATCAGTTCACTACTTTTCAATATTTTTGACATGAAATGAGTTAAATTGGCTCAAAGTTGAGAGGTCGTCGCTTGCCGGCCTCTCAACTTTGGGCTAGCTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCGACTGATAAGATATAGGAAATGTTATGATAAATATTTTATCAGTAAACTACTTTTTGATATCTTTCTTAGGAAGCGAAATAAATTGCCTCAAAAATTTTTTTGAAAAAAATATTTCTGAAAATTTGAGTTTTGGACATTTTCAAGGTCCCATATCTCATACCAAACATGATCAATTYTTAACAAAAATATATTATTAAATAGGAAATTTCATATGGATAATTTTCATATTTCAAATTTTTCAAGAATTGCAGTCATGAGGTTTACTAGAGCGCAATTACTGACACAATGCTATTCTGAAACCAAAAAATGTCATAACTCGGCTCAAAATTATCCGATTTTTATAGTATCATTGAATAGTCTTTTAATTTCCAGATTTTCGTAGACCATGCTCTATCTCTGGAACCCAATGACCTAGATATGTTGTACTTGAGAGGCCGCTGGTACCGAATGGTCTCTCAAATCACATGGATTCAAAGTACCAAGAGCTCCCTAATGTCGATTCCTCCCCCAGAAGGAACTCTAGATCAAGCGATTGACGACTTCAAAAAGGCTTATTTAATCGCTCCATTTTGCCAGAAAACGACAGTTTGTTTGGCGATAAGTTTGTTTGAAAAACGAGACTTTGAAACTGCGAAAATGCATTTTAAGCATATTGTACAGATGAGTAAGGAGTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTTTGGACATTTTCAAGGT</pcr_primer_p1>
		<pcr_primer_p2>TACGAAAATCTGGAAATTAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AGTTTTGGACATTTTCAAGGTCCCATATCTCATACCAAACATGATCAATTCTTAACAAAAATATATTATTAAATAGGAAATTTCATATGGATAATTTTCATATTTCAAATTTTTCAAGAATTGCAGTCATGAGGTTTACTAGAGCGCAATTACTGACACAATGCTATTCTGAAACCAAAAAATGTCATAACTCGGCTCAAAATTATCCGATTTTTATAGTATCATTGAATAGTCTTTTAATTTCCAGATTTTCGTA</canonical_amplicon>
		<polymorphic_amplicon>AGTTTTGGACATTTTCAAGGTCCCATATCTCATACCAAACATGATCAATTYTTAACAAAAATATATTATTAAATAGGAAATTTCATATGGATAATTTTCATATTTCAAATTTTTCAAGAATTGCAGTCATGAGGTTTACTAGAGCGCAATTACTGACACAATGCTATTCTGAAACCAAAAAATGTCATAACTCGGCTCAAAATTATCCGATTTTTATAGTATCATTGAATAGTCTTTTAATTTCCAGATTTTCGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27186</snp_id>
        <super_contig>c002901207.Contig2</super_contig>
        <contig_pos>1660</contig_pos>
        <strand></strand>
        <context>ATGCTATTCT[G/C]AAACCAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TTGCAGTCATGAGGTTTACTAGAGCGCAATTACTGACACAATGCTATTCT</left_flank>
        <right_flank>AAACCAAAAAATGTCATAACTCGGCTCAAAATTATCCGATTTTTATAGTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTACTGTAGTAGATATCAAAAAGTGATCAACTGACAAAATGTTTATCTGAATATCAGTGACATTTTATCAGTTCACTACTTTTCAATATTTTTGACATGAAATGAGTTAAATTGGCTCAAAGTTGAGAGGTCGTCGCTTGCCGGCCTCTCAACTTTGGGCTAGCTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCGACTGATAAGATATAGGAAATGTTATGATAAATATTTTATCAGTAAACTACTTTTTGATATCTTTCTTAGGAAGCGAAATAAATTGCCTCAAAAATTTTTTTGAAAAAAATATTTCTGAAAATTTGAGTTTTGGACATTTTCAAGGTCCCATATCTCATACCAAACATGATCAATTCTTAACAAAAATATATTATTAAATAGGAAATTTCATATGGATAATTTTCATATTTCAAATTTTTCAAGAATTGCAGTCATGAGGTTTACTAGAGCGCAATTACTGACACAATGCTATTCTGAAACCAAAAAATGTCATAACTCGGCTCAAAATTATCCGATTTTTATAGTATCATTGAATAGTCTTTTAATTTCCAGATTTTCGTAGACCATGCTCTATCTCTGGAACCCAATGACCTAGATATGTTGTACTTGAGAGGCCGCTGGTACCGAATGGTCTCTCAAATCACATGGATTCAAAGTACCAAGAGCTCCCTAATGTCGATTCCTCCCCCAGAAGGAACTCTAGATCAAGCGATTGACGACTTCAAAAAGGCTTATTTAATCGCTCCATTTTGCCAGAAAACGACAGTTTGTTTGGCGATAAGTTTGTTTGAAAAACGAGACTTTGAAACTGCGAAAATGCATTTTAAGCATATTGTACAGATGAGTAAGGAGTCAACAAAGAGGTCCAGTTTTGTTAGTGAAGCTGAAAAATATTTGGCAAAGTGTAATTTGATTGAAGTGGACGAATTAGTGAAAAAAGCTAGAACAAAGATTATTGGTGTCCGTGTAGCTCTGT</canonical>
            <polymorphic>GGTTACTGTAGTAGATATCAAAAAGTGATCAACTGACAAAATGTTTATCTGAATATCAGTGACATTTTATCAGTTCACTACTTTTCAATATTTTTGACATGAAATGAGTTAAATTGGCTCAAAGTTGAGAGGTCGTCGCTTGCCGGCCTCTCAACTTTGGGCTAGCTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCGACTGATAAGATATAGGAAATGTTATGATAAATATTTTATCAGTAAACTACTTTTTGATATCTTTCTTAGGAAGCGAAATAAATTGCCTCAAAAATTTTTTTGAAAAAAATATTTCTGAAAATTTGAGTTTTGGACATTTTCAAGGTCCCATATCTCATACCAAACATGATCAATTCTTAACAAAAATATATTATTAAATAGGAAATTTCATATGGATAATTTTCATATTTCAAATTTTTCAAGAATTGCAGTCATGAGGTTTACTAGAGCGCAATTACTGACACAATGCTATTCTSAAACCAAAAAATGTCATAACTCGGCTCAAAATTATCCGATTTTTATAGTATCATTGAATAGTCTTTTAATTTCCAGATTTTCGTAGACCATGCTCTATCTCTGGAACCCAATGACCTAGATATGTTGTACTTGAGAGGCCGCTGGTACCGAATGGTCTCTCAAATCACATGGATTCAAAGTACCAAGAGCTCCCTAATGTCGATTCCTCCCCCAGAAGGAACTCTAGATCAAGCGATTGACGACTTCAAAAAGGCTTATTTAATCGCTCCATTTTGCCAGAAAACGACAGTTTGTTTGGCGATAAGTTTGTTTGAAAAACGAGACTTTGAAACTGCGAAAATGCATTTTAAGCATATTGTACAGATGAGTAAGGAGTCAACAAAGAGGTCCAGTTTTGTTAGTGAAGCTGAAAAATATTTGGCAAAGTGTAATTTGATTGAAGTGGACGAATTAGTGAAAAAAGCTAGAACAAAGATTATTGGTGTCCGTGTAGCTCTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>463 270 179 50 38</canonical_bands>
                <polymorphic_bands>463 270 217 50</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGCAGTCATGAGGTTTACTA</pcr_primer_p1>
		<pcr_primer_p2>ATTAGGGAGCTCTTGGTACTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATTGCAGTCATGAGGTTTACTAGAGCGCAATTACTGACACAATGCTATTCTGAAACCAAAAAATGTCATAACTCGGCTCAAAATTATCCGATTTTTATAGTATCATTGAATAGTCTTTTAATTTCCAGATTTTCGTAGACCATGCTCTATCTCTGGAACCCAATGACCTAGATATGTTGTACTTGAGAGGCCGCTGGTACCGAATGGTCTCTCAAATCACATGGATTCAAAGTACCAAGAGCTCCCTAAT</canonical_amplicon>
		<polymorphic_amplicon>AATTGCAGTCATGAGGTTTACTAGAGCGCAATTACTGACACAATGCTATTCTSAAACCAAAAAATGTCATAACTCGGCTCAAAATTATCCGATTTTTATAGTATCATTGAATAGTCTTTTAATTTCCAGATTTTCGTAGACCATGCTCTATCTCTGGAACCCAATGACCTAGATATGTTGTACTTGAGAGGCCGCTGGTACCGAATGGTCTCTCAAATCACATGGATTCAAAGTACCAAGAGCTCCCTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27187</snp_id>
        <super_contig>c002901207.Contig2</super_contig>
        <contig_pos>1722</contig_pos>
        <strand></strand>
        <context>CATTGAATAG[T/C]CTTTTAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGTCATAACTCGGCTCAAAATTATCCGATTTTTATAGTATCATTGAATAG</left_flank>
        <right_flank>CTTTTAATTTCCAGATTTTCGTAGACCATGCTCTATCTCTGGAACCCAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTTATCAGTTCACTACTTTTCAATATTTTTGACATGAAATGAGTTAAATTGGCTCAAAGTTGAGAGGTCGTCGCTTGCCGGCCTCTCAACTTTGGGCTAGCTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCGACTGATAAGATATAGGAAATGTTATGATAAATATTTTATCAGTAAACTACTTTTTGATATCTTTCTTAGGAAGCGAAATAAATTGCCTCAAAAATTTTTTTGAAAAAAATATTTCTGAAAATTTGAGTTTTGGACATTTTCAAGGTCCCATATCTCATACCAAACATGATCAATTCTTAACAAAAATATATTATTAAATAGGAAATTTCATATGGATAATTTTCATATTTCAAATTTTTCAAGAATTGCAGTCATGAGGTTTACTAGAGCGCAATTACTGACACAATGCTATTCTGAAACCAAAAAATGTCATAACTCGGCTCAAAATTATCCGATTTTTATAGTATCATTGAATAGTCTTTTAATTTCCAGATTTTCGTAGACCATGCTCTATCTCTGGAACCCAATGACCTAGATATGTTGTACTTGAGAGGCCGCTGGTACCGAATGGTCTCTCAAATCACATGGATTCAAAGTACCAAGAGCTCCCTAATGTCGATTCCTCCCCCAGAAGGAACTCTAGATCAAGCGATTGACGACTTCAAAAAGGCTTATTTAATCGCTCCATTTTGCCAGAAAACGACAGTTTGTTTGGCGATAAGTTTGTTTGAAAAACGAGACTTTGAAACTGCGAAAATGCATTTTAAGCATATTGTACAGATGAGTAAGGAGTCAACAAAGAGGTCCAGTTTTGTTAGTGAAGCTGAAAAATATTTGGCAAAGTGTAATTTGATTGAAGTGGACGAATTAGTGAAAAAAGCTAGAACAAAGATTATTGGTGTCCGTGTAGCTCTGTGGAAGTTTGGTTTAGCGATTCGGGGCTGCCCTGACTATGAGCACGAATATCTCCTTTTCTGG</canonical>
            <polymorphic>CATTTTATCAGTTCACTACTTTTCAATATTTTTGACATGAAATGAGTTAAATTGGCTCAAAGTTGAGAGGTCGTCGCTTGCCGGCCTCTCAACTTTGGGCTAGCTTATCTCGGTTACTGTAGTAGATATCAAAAAGTGATCGACTGATAAGATATAGGAAATGTTATGATAAATATTTTATCAGTAAACTACTTTTTGATATCTTTCTTAGGAAGCGAAATAAATTGCCTCAAAAATTTTTTTGAAAAAAATATTTCTGAAAATTTGAGTTTTGGACATTTTCAAGGTCCCATATCTCATACCAAACATGATCAATTCTTAACAAAAATATATTATTAAATAGGAAATTTCATATGGATAATTTTCATATTTCAAATTTTTCAAGAATTGCAGTCATGAGGTTTACTAGAGCGCAATTACTGACACAATGCTATTCTGAAACCAAAAAATGTCATAACTCGGCTCAAAATTATCCGATTTTTATAGTATCATTGAATAGYCTTTTAATTTCCAGATTTTCGTAGACCATGCTCTATCTCTGGAACCCAATGACCTAGATATGTTGTACTTGAGAGGCCGCTGGTACCGAATGGTCTCTCAAATCACATGGATTCAAAGTACCAAGAGCTCCCTAATGTCGATTCCTCCCCCAGAAGGAACTCTAGATCAAGCGATTGACGACTTCAAAAAGGCTTATTTAATCGCTCCATTTTGCCAGAAAACGACAGTTTGTTTGGCGATAAGTTTGTTTGAAAAACGAGACTTTGAAACTGCGAAAATGCATTTTAAGCATATTGTACAGATGAGTAAGGAGTCAACAAAGAGGTCCAGTTTTGTTAGTGAAGCTGAAAAATATTTGGCAAAGTGTAATTTGATTGAAGTGGACGAATTAGTGAAAAAAGCTAGAACAAAGATTATTGGTGTCCGTGTAGCTCTGTGGAAGTTTGGTTTAGCGATTCGGGGCTGCCCTGACTATGAGCACGAATATCTCCTTTTCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGCAGTCATGAGGTTTACTA</pcr_primer_p1>
		<pcr_primer_p2>ATTAGGGAGCTCTTGGTACTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATTGCAGTCATGAGGTTTACTAGAGCGCAATTACTGACACAATGCTATTCTGAAACCAAAAAATGTCATAACTCGGCTCAAAATTATCCGATTTTTATAGTATCATTGAATAGTCTTTTAATTTCCAGATTTTCGTAGACCATGCTCTATCTCTGGAACCCAATGACCTAGATATGTTGTACTTGAGAGGCCGCTGGTACCGAATGGTCTCTCAAATCACATGGATTCAAAGTACCAAGAGCTCCCTAAT</canonical_amplicon>
		<polymorphic_amplicon>AATTGCAGTCATGAGGTTTACTAGAGCGCAATTACTGACACAATGCTATTCTGAAACCAAAAAATGTCATAACTCGGCTCAAAATTATCCGATTTTTATAGTATCATTGAATAGYCTTTTAATTTCCAGATTTTCGTAGACCATGCTCTATCTCTGGAACCCAATGACCTAGATATGTTGTACTTGAGAGGCCGCTGGTACCGAATGGTCTCTCAAATCACATGGATTCAAAGTACCAAGAGCTCCCTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27188</snp_id>
        <super_contig>c002901207.Contig2</super_contig>
        <contig_pos>3335</contig_pos>
        <strand>+</strand>
        <context>GAACTTTTCG[A/T]ATTGGTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGCCTTTTTCGATATATCGACTCTAGAAAATTCAATTTCGAACTTTTCG</left_flank>
        <right_flank>ATTGGTTTTTTGGGATTTTAATTAAGAAAATTTCGAGGTATCACATGATA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCTAACAATTTTTCTTGAAACGTTTTTTTGTAATTTTAATAAATCAATTAATTTTTGAAAATCTCTTTTTTTTCAGTTTTTTTCTATTTTTACGGGTTCTTGCCTGGTTTCTACCTTTTTTTTCTTTTTTTTTGTGGAAGTTCATTTAAACATATTCCAAACATTCAAAAAATTTCCTATCAATTGATATAATTTGCATAATTTTTTTCAGATTCTTTCCTCCCAAAAATGCACATCTGCCCAATCGATGAACTTGAAATTCCACAAGAAAAAGATGATATACTGTATGAAGTGGATGAGCTTTTGAGCACATTCCGGGTCAAGGACACTTATGAGGCATTTGAGAAACTTCAATTTGTGAGTTTTAATTAACTGAAAGTTTAGAAAAACTAGAGCTCTCAAATGATCCAAAAATCAAAGTTCTGGGTGGGAAATGAGAGGAGTTATAAGCCTTTTTCGATATATCGACTCTAGAAAATTCAATTTCGAACTTTTCGTATTGGTTTTTTGGGATTTTAATTAAGAAAATTTCGAGGTATCACATGATACTTTAACTAAAGCTCTAGGTTGAAAACAAACAAAGTAATAAAACGGTTTACAGGGGTTAGACGTCTTTCAGAGCCGCTGGCCGCGGCCGACCGCGACTTAGAATAATCATTTTTATACCAAAATGATCCTTGTGGCATGAGCTACAAAAATATATTAATAACTTTGCAGGATTCTAACTTTGAAGCTAGTTACAGTTCAGAAAATAAACGCTAACTTGAAAACGAAGGGAGTTTTGGTGAAACTTTAATTTTAGGGTTTCAAAGCCTCGGAACTACGGTCGACCGCTACCGAGGACAATGGTTTTTGTATCAGAATGACCCTTATCACATAAGCTACAAAAATATACAACTAATTAATTAAAATTCTAATTATGAAGCTAGTTACAGGTTAAAACATGATGCATGTCTCCAGCTCGACATTTTACGCGCTGTAAAAAGTTTACAGACAGG</canonical>
            <polymorphic>CCTCTAACAATTTTTCTTGAAACGTTTTTTTGTAATTTTAATAAATCAATTAATTTTTGAAAATCTCTTTTTTTTCAGTTTTTTTCTATTTTTACGGGTTCTTGCCTGGTTTCTACCTTTTTTTTCTTTTTTTTTGTGGAAGTTCATTTAAACATATTCCAAACATTCAAAAAATTTCCTATCAATTGATATAATTTGCATAATTTTTTTCAGATTCTTTCCTCCCAAAAATGCACATCTGCCCAATCGATGAACTTGAAATTCCACAAGAAAAAGATGATATACTGTATGAAGTGGATGAGCTTTTGAGCACATTCCGGGTCAAGGACACTTATGAGGCATTTGAGAAACTTCAATTTGTGAGTTTTAATTAACTGAAAGTTTAGAAAAACTAGAGCTCTCAAATGATCCAAAAATCAAAGTTCTGGGTGGGAAATGAGAGGAGTTATAAGCCTTTTTCGATATATCGACTCTAGAAAATTCAATTTCGAACTTTTCGWATTGGTTTTTTGGGATTTTAATTAAGAAAATTTCGAGGTATCACATGATACTTTAACTAAAGCTCTAGGTTGAAAACAAACAAAGTAATAAAACGGTTTACAGGGGTTAGACGTCTTTCAGAGCCGCTGGCCGCGGCCGACCGCGACTTAGAATAATCATTTTTATACCAAAATGATCCTTGTGGCATGAGCTACAAAAATATATTAATAACTTTGCAGGATTCTAACTTTGAAGCTAGTTACAGTTCAGAAAATAAACGCTAACTTGAAAACGAAGGGAGTTTTGGTGAAACTTTAATTTTAGGGTTTCAAAGCCTCGGAACTACGGTCGACCGCTACCGAGGACAATGGTTTTTGTATCAGAATGACCCTTATCACATAAGCTACAAAAATATACAACTAATTAATTAAAATTCTAATTATGAAGCTAGTTACAGGTTAAAACATGATGCATGTCTCCAGCTCGACATTTTACGCGCTGTAAAAAGTTTACAGACAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGAGGAGTTATAAGCCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CACAAGGATCATTTTGGTATAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGAGAGGAGTTATAAGCCTTTTTCGATATATCGACTCTAGAAAATTCAATTTCGAACTTTTCGTATTGGTTTTTTGGGATTTTAATTAAGAAAATTTCGAGGTATCACATGATACTTTAACTAAAGCTCTAGGTTGAAAACAAACAAAGTAATAAAACGGTTTACAGGGGTTAGACGTCTTTCAGAGCCGCTGGCCGCGGCCGACCGCGACTTAGAATAATCATTTTTATACCAAAATGATCCTTGTG</canonical_amplicon>
		<polymorphic_amplicon>TGAGAGGAGTTATAAGCCTTTTTCGATATATCGACTCTAGAAAATTCAATTTCGAACTTTTCGWATTGGTTTTTTGGGATTTTAATTAAGAAAATTTCGAGGTATCACATGATACTTTAACTAAAGCTCTAGGTTGAAAACAAACAAAGTAATAAAACGGTTTACAGGGGTTAGACGTCTTTCAGAGCCGCTGGCCGCGGCCGACCGCGACTTAGAATAATCATTTTTATACCAAAATGATCCTTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27189</snp_id>
        <super_contig>c002901207.Contig2</super_contig>
        <contig_pos>3421</contig_pos>
        <strand>+</strand>
        <context>ACAAACAAAG[C/T]AATAAAACGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGTATCACATGATACTTTAACTAAAGCTCTAGGTTGAAAACAAACAAAG</left_flank>
        <right_flank>AATAAAACGGTTTACAGGGGTTAGACGTCTTTCAGAGCCGCTGGCCGCGG</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTTTACGGGTTCTTGCCTGGTTTCTACCTTTTTTTTCTTTTTTTTTGTGGAAGTTCATTTAAACATATTCCAAACATTCAAAAAATTTCCTATCAATTGATATAATTTGCATAATTTTTTTCAGATTCTTTCCTCCCAAAAATGCACATCTGCCCAATCGATGAACTTGAAATTCCACAAGAAAAAGATGATATACTGTATGAAGTGGATGAGCTTTTGAGCACATTCCGGGTCAAGGACACTTATGAGGCATTTGAGAAACTTCAATTTGTGAGTTTTAATTAACTGAAAGTTTAGAAAAACTAGAGCTCTCAAATGATCCAAAAATCAAAGTTCTGGGTGGGAAATGAGAGGAGTTATAAGCCTTTTTCGATATATCGACTCTAGAAAATTCAATTTCGAACTTTTCGTATTGGTTTTTTGGGATTTTAATTAAGAAAATTTCGAGGTATCACATGATACTTTAACTAAAGCTCTAGGTTGAAAACAAACAAAGTAATAAAACGGTTTACAGGGGTTAGACGTCTTTCAGAGCCGCTGGCCGCGGCCGACCGCGACTTAGAATAATCATTTTTATACCAAAATGATCCTTGTGGCATGAGCTACAAAAATATATTAATAACTTTGCAGGATTCTAACTTTGAAGCTAGTTACAGTTCAGAAAATAAACGCTAACTTGAAAACGAAGGGAGTTTTGGTGAAACTTTAATTTTAGGGTTTCAAAGCCTCGGAACTACGGTCGACCGCTACCGAGGACAATGGTTTTTGTATCAGAATGACCCTTATCACATAAGCTACAAAAATATACAACTAATTAATTAAAATTCTAATTATGAAGCTAGTTACAGGTTAAAACATGATGCATGTCTCCAGCTCGACATTTTACGCGCTGTAAAAAGTTTACAGACAGGATTCGCAAGCGAATTTGACGATTTTCAGACAGATTTTTATACCGAAATGATCCTTGAAACATGAGCTACAAGAATATATAATTTGC</canonical>
            <polymorphic>TATTTTTACGGGTTCTTGCCTGGTTTCTACCTTTTTTTTCTTTTTTTTTGTGGAAGTTCATTTAAACATATTCCAAACATTCAAAAAATTTCCTATCAATTGATATAATTTGCATAATTTTTTTCAGATTCTTTCCTCCCAAAAATGCACATCTGCCCAATCGATGAACTTGAAATTCCACAAGAAAAAGATGATATACTGTATGAAGTGGATGAGCTTTTGAGCACATTCCGGGTCAAGGACACTTATGAGGCATTTGAGAAACTTCAATTTGTGAGTTTTAATTAACTGAAAGTTTAGAAAAACTAGAGCTCTCAAATGATCCAAAAATCAAAGTTCTGGGTGGGAAATGAGAGGAGTTATAAGCCTTTTTCGATATATCGACTCTAGAAAATTCAATTTCGAACTTTTCGTATTGGTTTTTTGGGATTTTAATTAAGAAAATTTCGAGGTATCACATGATACTTTAACTAAAGCTCTAGGTTGAAAACAAACAAAGYAATAAAACGGTTTACAGGGGTTAGACGTCTTTCAGAGCCGCTGGCCGCGGCCGACCGCGACTTAGAATAATCATTTTTATACCAAAATGATCCTTGTGGCATGAGCTACAAAAATATATTAATAACTTTGCAGGATTCTAACTTTGAAGCTAGTTACAGTTCAGAAAATAAACGCTAACTTGAAAACGAAGGGAGTTTTGGTGAAACTTTAATTTTAGGGTTTCAAAGCCTCGGAACTACGGTCGACCGCTACCGAGGACAATGGTTTTTGTATCAGAATGACCCTTATCACATAAGCTACAAAAATATACAACTAATTAATTAAAATTCTAATTATGAAGCTAGTTACAGGTTAAAACATGATGCATGTCTCCAGCTCGACATTTTACGCGCTGTAAAAAGTTTACAGACAGGATTCGCAAGCGAATTTGACGATTTTCAGACAGATTTTTATACCGAAATGATCCTTGAAACATGAGCTACAAGAATATATAATTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGAAAATTTCGAGGTATCACA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAAGTTAGCGTTTATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAGAAAATTTCGAGGTATCACATGATACTTTAACTAAAGCTCTAGGTTGAAAACAAACAAAGTAATAAAACGGTTTACAGGGGTTAGACGTCTTTCAGAGCCGCTGGCCGCGGCCGACCGCGACTTAGAATAATCATTTTTATACCAAAATGATCCTTGTGGCATGAGCTACAAAAATATATTAATAACTTTGCAGGATTCTAACTTTGAAGCTAGTTACAGTTCAGAAAATAAACGCTAACTTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TAAGAAAATTTCGAGGTATCACATGATACTTTAACTAAAGCTCTAGGTTGAAAACAAACAAAGYAATAAAACGGTTTACAGGGGTTAGACGTCTTTCAGAGCCGCTGGCCGCGGCCGACCGCGACTTAGAATAATCATTTTTATACCAAAATGATCCTTGTGGCATGAGCTACAAAAATATATTAATAACTTTGCAGGATTCTAACTTTGAAGCTAGTTACAGTTCAGAAAATAAACGCTAACTTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27190</snp_id>
        <super_contig>c002901207.Contig2</super_contig>
        <contig_pos>4651</contig_pos>
        <strand></strand>
        <context>gaatcaagga[G/A]agtaggtcat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATTTCGGCTTTAAAGGCGCATAGGGGGTCCGGATTTTAAGAATCAAGGA</left_flank>
        <right_flank>AGTAGGTCATGTTTATACACATTTTGAAGCTGGGAACTTGACAAATTTAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTCGATTGAAGTCCTCTTCAGACTCGCCAAATTCTGTTACAACAATGCGGACCAATTGGGGACCGACAAAGATAAGATTCAAATGTTAGAAATGGGAAAGGAGTACTTGGTCAAGGTCTATGAAACGGATAAGGAGAATTTCCTGGCAGCCAAATGGCTGGCGTACCTCTCGTTGAAGCTGCTGGCGGTACTTCCATTCAGGAGTAAAATGTATGAAGCTAGGAAGACAAAGGTTGGTTGGGAATTTATTACATTTAGAATAACCTAAAAGACTTGGGATTTCACTGGGTTACTGTAGTTCAGTAAAGGTGGAGCTTGAAAGATGACAGTAATCTTACCGTAACTCGGTCAATTTTACCGTAAACTTTAATTTTTGTAAACATTCGAATTCCTCCAGTTCAGAGCTTCAAAATGAGTACCCACACGCCTATGTTCCTTTTAATTAGAAATTTCGGCTTTAAAGGCGCATAGGGGGTCCGGATTTTAAGAATCAAGGAGAGTAGGTCATGTTTATACACATTTTGAAGCTGGGAACTTGACAAATTTAGATCCGTTCGAAAACATTGATTTGGTCTACCAATTAAGTAATTTCAGGCCTACCTCGACCGCGCAATCGCACTCCATCCCATGGCGTGGTACCTTCAACATCTACGCGGTCGTTGGTATCACGAATTTGCCAATTTGTCATGGATCAAACGTAAAATAAGCGTTTGCCTGGGATGCACTGCTCCAGAAGGGACCCTCGAGGAAGCAATCGATAACTATAGATCCGCCCAGCAGTTATTCGGCGATTCACTGAGAAACCATGTCTTCTTGGGCATTGCTCTGTTTGAAGACGGCCGGAAATTTGCTGCAAAACGATATTTCCATCGTGCGCTGACTTTCAAAACTATCACGGAAACAAGAATTAAGCTTAATCGTATAGCAGAATACTATTTTTGGAGGTGTTGATTGTTGATTTGAACCCAATTTATCTTGGTTACTGTAAGAGATATCAA</canonical>
            <polymorphic>GAGTCGATTGAAGTCCTCTTCAGACTCGCCAAATTCTGTTACAACAATGCGGACCAATTGGGGACCGACAAAGATAAGATTCAAATGTTAGAAATGGGAAAGGAGTACTTGGTCAAGGTCTATGAAACGGATAAGGAGAATTTCCTGGCAGCCAAATGGCTGGCGTACCTCTCGTTGAAGCTGCTGGCGGTACTTCCATTCAGGAGTAAAATGTATGAAGCTAGGAAGACAAAGGTTGGTTGGGAATTTATTACATTTAGAATAACCTAAAAGACTTGGGATTTCACTGGGTTACTGTAGTTCAGTAAAGGTGGAGCTTGAAAGATGACAGTAATCTTACCGTAACTCGGTCAATTTTACCGTAAACTTTAATTTTTGTAAACATTCGAATTCCTCCAGTTCAGAGCTTCAAAATGAGTACCCACACGCCTATGTTCCTTTTAATTAGAAATTTCGGCTTTAAAGGCGCATAGGGGGTCCGGATTTTAAGAATCAAGGARAGTAGGTCATGTTTATACACATTTTGAAGCTGGGAACTTGACAAATTTAGATCCGTTCGAAAACATTGATTTGGTCTACCAATTAAGTAATTTCAGGCCTACCTCGACCGCGCAATCGCACTCCATCCCATGGCGTGGTACCTTCAACATCTACGCGGTCGTTGGTATCACGAATTTGCCAATTTGTCATGGATCAAACGTAAAATAAGCGTTTGCCTGGGATGCACTGCTCCAGAAGGGACCCTCGAGGAAGCAATCGATAACTATAGATCCGCCCAGCAGTTATTCGGCGATTCACTGAGAAACCATGTCTTCTTGGGCATTGCTCTGTTTGAAGACGGCCGGAAATTTGCTGCAAAACGATATTTCCATCGTGCGCTGACTTTCAAAACTATCACGGAAACAAGAATTAAGCTTAATCGTATAGCAGAATACTATTTTTGGAGGTGTTGATTGTTGATTTGAACCCAATTTATCTTGGTTACTGTAAGAGATATCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCACTGGGTTACTGTAGTTCA</pcr_primer_p1>
		<pcr_primer_p2>GAGGTAGGCCTGAAATTACTTA</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>TTCACTGGGTTACTGTAGTTCAGTAAAGGTGGAGCTTGAAAGATGACAGTAATCTTACCGTAACTCGGTCAATTTTACCGTAAACTTTAATTTTTGTAAACATTCGAATTCCTCCAGTTCAGAGCTTCAAAATGAGTACCCACACGCCTATGTTCCTTTTAATTAGAAATTTCGGCTTTAAAGGCGCATAGGGGGTCCGGATTTTAAGAATCAAGGAGAGTAGGTCATGTTTATACACATTTTGAAGCTGGGAACTTGACAAATTTAGATCCGTTCGAAAACATTGATTTGGTCTACCAATTAAGTAATTTCAGGCCTACCTC</canonical_amplicon>
		<polymorphic_amplicon>TTCACTGGGTTACTGTAGTTCAGTAAAGGTGGAGCTTGAAAGATGACAGTAATCTTACCGTAACTCGGTCAATTTTACCGTAAACTTTAATTTTTGTAAACATTCGAATTCCTCCAGTTCAGAGCTTCAAAATGAGTACCCACACGCCTATGTTCCTTTTAATTAGAAATTTCGGCTTTAAAGGCGCATAGGGGGTCCGGATTTTAAGAATCAAGGARAGTAGGTCATGTTTATACACATTTTGAAGCTGGGAACTTGACAAATTTAGATCCGTTCGAAAACATTGATTTGGTCTACCAATTAAGTAATTTCAGGCCTACCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27191</snp_id>
        <super_contig>c002901562.Contig1</super_contig>
        <contig_pos>9450</contig_pos>
        <strand></strand>
        <context>attaacaaag[A/T]atgaaatast</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGAACTTAAAATGAAAAAAGGCTGCATTACTCAACAAAATTAACAAAG</left_flank>
        <right_flank>ATGAAATACTCGAAAAATAGGTCGTTTTTATCTAAATTTTTGAAAAAAAT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTTCTTCTTCTTGACTACCAACCAATGAAGTTCAAACTTCATCCACGACTTGCAAAAGTTCTCGGAATCGCCGCTGAGACTCGCCCACGAATCATTGAAGCTCTCTGGCAATACATCAAAACGCACAAGCTTCAGGATCCACAAGATCGGGATACTATAAACAATGATTTGTTCTTGGAACAATGCTTCGGTGTAAAAAAGATGAGATTCATGGAAATCCCACAACGTCTTCATCAGCTTCTACAACAACCTGATCCACTCATATTGAATCATATTATTCAAAGACCGGAAGATGGTCAAGACAAGACATCTGCCTGCTATGACATTGGTAAAAATCATAGTTGCAAAAGGCCGGGCCGGTAGACGAATTTTCTCGGCCCGGCCCGACCCCGGGCCGGCCCGCCTACCACTGTTGAAAATTTTCCAATGAAAATTTGGGAAATTTTTTTGAACTTAAAATGAAAAAAGGCTGCATTACTCAACAAAATTAACAAAGAATGAAATACTCGAAAAATAGGTCGTTTTTATCTAAATTTTTGAAAAAAATTCAAAAATTTCGAAAAAAAATTCAAAAAATCAACGTCTGTAGGTACCCCGGGCCGGCACTTCATCGGCCCGGCCCACCGAAATTCTCGACGAGCCGGCCCGAGATTTCGCAACTATGGTAAAAATAATCAAATTTATTTTTTTTTCAAATCTTCTTTTGTTTAGATGTTGAGCTCGAGGATCCGGTGAAACAGCAAATGGCAAGTTTCGTGCACAATCAAAACAATGCCAACGATATCCAAGTTCTCGATCGAAAAATATATGATCTGGTTGACCAGATCAACGAAATGAAACTCCGTCGTGACTTCTTCCTTCGATTCTCAAACGAACCCAGCGGATTCATAAAGAAATGGGTTGTCAGCCAGAACACCGACTTAAAAACTCTGACCGAATCAAATGGTGATGGAGAAGCCGATCGTCATGCCAACACATACACCACTAATGATGCGGA</canonical>
            <polymorphic>ATTCTTCTTCTTCTTGACTACCAACCAATGAAGTTCAAACTTCATCCACGACTTGCAAAAGTTCTCGGAATCGCCGCTGAGACTCGCCCACGAATCATTGAAGCTCTCTGGCAATACATCAAAACGCACAAGCTTCAGGATCCACAAGATCGGGATACTATAAACAATGATTTGTTCTTGGAACAATGCTTCGGTGTAAAAAAGATGAGATTCATGGAAATCCCACAACGTCTTCATCAGCTTCTACAACAACCTGATCCACTCATATTGAATCATATTATTCAAAGACCGGAAGATGGTCAAGACAAGACATCTGCCTGCTATGACATTGGTAAAAATCATAGTTGCAAAAGGCCGGGCCGGTAGACGAATTTTCTCGGCCCGGCCCGACCCCGGGCCGGCCCGCCTACCACTGTTGAAAATTTTCCAATGAAAATTTGGGAAATTTTTTTGAACTTAAAATGAAAAAAGGCTGCATTACTCAACAAAATTAACAAAGWATGAAATACTCGAAAAATAGGTCGTTTTTATCTAAATTTTTGAAAAAAATTCAAAAATTTCGAAAAAAAATTCAAAAAATCAACGTCTGTAGGTACCCCGGGCCGGCACTTCATCGGCCCGGCCCACCGAAATTCTCGACGAGCCGGCCCGAGATTTCGCAACTATGGTAAAAATAATCAAATTTATTTTTTTTTCAAATCTTCTTTTGTTTAGATGTTGAGCTCGAGGATCCGGTGAAACAGCAAATGGCAAGTTTCGTGCACAATCAAAACAATGCCAACGATATCCAAGTTCTCGATCGAAAAATATATGATCTGGTTGACCAGATCAACGAAATGAAACTCCGTCGTGACTTCTTCCTTCGATTCTCAAACGAACCCAGCGGATTCATAAAGAAATGGGTTGTCAGCCAGAACACCGACTTAAAAACTCTGACCGAATCAAATGGTGATGGAGAAGCCGATCGTCATGCCAACACATACACCACTAATGATGCGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACATTGGTAAAAATCATAGTTG</pcr_primer_p1>
		<pcr_primer_p2>CATCTAAACAAAAGAAGATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>394</pcr_amplicon_size>
		<canonical_amplicon>TGACATTGGTAAAAATCATAGTTGCAAAAGGCCGGGCCGGTAGACGAATTTTCTCGGCCCGGCCCGACCCCGGGCCGGCCCGCCTACCACTGTTGAAAATTTTCCAATGAAAATTTGGGAAATTTTTTTGAACTTAAAATGAAAAAAGGCTGCATTACTCAACAAAATTAACAAAGAATGAAATACTCGAAAAATAGGTCGTTTTTATCTAAATTTTTGAAAAAAATTCAAAAATTTCGAAAAAAAATTCAAAAAATCAACGTCTGTAGGTACCCCGGGCCGGCACTTCATCGGCCCGGCCCACCGAAATTCTCGACGAGCCGGCCCGAGATTTCGCAACTATGGTAAAAATAATCAAATTTATTTTTTTTTCAAATCTTCTTTTGTTTAGATG</canonical_amplicon>
		<polymorphic_amplicon>TGACATTGGTAAAAATCATAGTTGCAAAAGGCCGGGCCGGTAGACGAATTTTCTCGGCCCGGCCCGACCCCGGGCCGGCCCGCCTACCACTGTTGAAAATTTTCCAATGAAAATTTGGGAAATTTTTTTGAACTTAAAATGAAAAAAGGCTGCATTACTCAACAAAATTAACAAAGWATGAAATACTCGAAAAATAGGTCGTTTTTATCTAAATTTTTGAAAAAAATTCAAAAATTTCGAAAAAAAATTCAAAAAATCAACGTCTGTAGGTACCCCGGGCCGGCACTTCATCGGCCCGGCCCACCGAAATTCTCGACGAGCCGGCCCGAGATTTCGCAACTATGGTAAAAATAATCAAATTTATTTTTTTTTCAAATCTTCTTTTGTTTAGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27192</snp_id>
        <super_contig>c002901562.Contig1</super_contig>
        <contig_pos>9459</contig_pos>
        <strand></strand>
        <context>gwatgaaata[C/G]tcgaaaaata</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAATGAAAAAAGGCTGCATTACTCAACAAAATTAACAAAGAATGAAATA</left_flank>
        <right_flank>TCGAAAAATAGGTCGTTTTTATCTAAATTTTTGAAAAAAATTCAAAAATT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCTTGACTACCAACCAATGAAGTTCAAACTTCATCCACGACTTGCAAAAGTTCTCGGAATCGCCGCTGAGACTCGCCCACGAATCATTGAAGCTCTCTGGCAATACATCAAAACGCACAAGCTTCAGGATCCACAAGATCGGGATACTATAAACAATGATTTGTTCTTGGAACAATGCTTCGGTGTAAAAAAGATGAGATTCATGGAAATCCCACAACGTCTTCATCAGCTTCTACAACAACCTGATCCACTCATATTGAATCATATTATTCAAAGACCGGAAGATGGTCAAGACAAGACATCTGCCTGCTATGACATTGGTAAAAATCATAGTTGCAAAAGGCCGGGCCGGTAGACGAATTTTCTCGGCCCGGCCCGACCCCGGGCCGGCCCGCCTACCACTGTTGAAAATTTTCCAATGAAAATTTGGGAAATTTTTTTGAACTTAAAATGAAAAAAGGCTGCATTACTCAACAAAATTAACAAAGAATGAAATACTCGAAAAATAGGTCGTTTTTATCTAAATTTTTGAAAAAAATTCAAAAATTTCGAAAAAAAATTCAAAAAATCAACGTCTGTAGGTACCCCGGGCCGGCACTTCATCGGCCCGGCCCACCGAAATTCTCGACGAGCCGGCCCGAGATTTCGCAACTATGGTAAAAATAATCAAATTTATTTTTTTTTCAAATCTTCTTTTGTTTAGATGTTGAGCTCGAGGATCCGGTGAAACAGCAAATGGCAAGTTTCGTGCACAATCAAAACAATGCCAACGATATCCAAGTTCTCGATCGAAAAATATATGATCTGGTTGACCAGATCAACGAAATGAAACTCCGTCGTGACTTCTTCCTTCGATTCTCAAACGAACCCAGCGGATTCATAAAGAAATGGGTTGTCAGCCAGAACACCGACTTAAAAACTCTGACCGAATCAAATGGTGATGGAGAAGCCGATCGTCATGCCAACACATACACCACTAATGATGCGGACGAAGGAGT</canonical>
            <polymorphic>CTTCTTGACTACCAACCAATGAAGTTCAAACTTCATCCACGACTTGCAAAAGTTCTCGGAATCGCCGCTGAGACTCGCCCACGAATCATTGAAGCTCTCTGGCAATACATCAAAACGCACAAGCTTCAGGATCCACAAGATCGGGATACTATAAACAATGATTTGTTCTTGGAACAATGCTTCGGTGTAAAAAAGATGAGATTCATGGAAATCCCACAACGTCTTCATCAGCTTCTACAACAACCTGATCCACTCATATTGAATCATATTATTCAAAGACCGGAAGATGGTCAAGACAAGACATCTGCCTGCTATGACATTGGTAAAAATCATAGTTGCAAAAGGCCGGGCCGGTAGACGAATTTTCTCGGCCCGGCCCGACCCCGGGCCGGCCCGCCTACCACTGTTGAAAATTTTCCAATGAAAATTTGGGAAATTTTTTTGAACTTAAAATGAAAAAAGGCTGCATTACTCAACAAAATTAACAAAGAATGAAATASTCGAAAAATAGGTCGTTTTTATCTAAATTTTTGAAAAAAATTCAAAAATTTCGAAAAAAAATTCAAAAAATCAACGTCTGTAGGTACCCCGGGCCGGCACTTCATCGGCCCGGCCCACCGAAATTCTCGACGAGCCGGCCCGAGATTTCGCAACTATGGTAAAAATAATCAAATTTATTTTTTTTTCAAATCTTCTTTTGTTTAGATGTTGAGCTCGAGGATCCGGTGAAACAGCAAATGGCAAGTTTCGTGCACAATCAAAACAATGCCAACGATATCCAAGTTCTCGATCGAAAAATATATGATCTGGTTGACCAGATCAACGAAATGAAACTCCGTCGTGACTTCTTCCTTCGATTCTCAAACGAACCCAGCGGATTCATAAAGAAATGGGTTGTCAGCCAGAACACCGACTTAAAAACTCTGACCGAATCAAATGGTGATGGAGAAGCCGATCGTCATGCCAACACATACACCACTAATGATGCGGACGAAGGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACATTGGTAAAAATCATAGTTG</pcr_primer_p1>
		<pcr_primer_p2>CATCTAAACAAAAGAAGATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>394</pcr_amplicon_size>
		<canonical_amplicon>TGACATTGGTAAAAATCATAGTTGCAAAAGGCCGGGCCGGTAGACGAATTTTCTCGGCCCGGCCCGACCCCGGGCCGGCCCGCCTACCACTGTTGAAAATTTTCCAATGAAAATTTGGGAAATTTTTTTGAACTTAAAATGAAAAAAGGCTGCATTACTCAACAAAATTAACAAAGAATGAAATACTCGAAAAATAGGTCGTTTTTATCTAAATTTTTGAAAAAAATTCAAAAATTTCGAAAAAAAATTCAAAAAATCAACGTCTGTAGGTACCCCGGGCCGGCACTTCATCGGCCCGGCCCACCGAAATTCTCGACGAGCCGGCCCGAGATTTCGCAACTATGGTAAAAATAATCAAATTTATTTTTTTTTCAAATCTTCTTTTGTTTAGATG</canonical_amplicon>
		<polymorphic_amplicon>TGACATTGGTAAAAATCATAGTTGCAAAAGGCCGGGCCGGTAGACGAATTTTCTCGGCCCGGCCCGACCCCGGGCCGGCCCGCCTACCACTGTTGAAAATTTTCCAATGAAAATTTGGGAAATTTTTTTGAACTTAAAATGAAAAAAGGCTGCATTACTCAACAAAATTAACAAAGAATGAAATASTCGAAAAATAGGTCGTTTTTATCTAAATTTTTGAAAAAAATTCAAAAATTTCGAAAAAAAATTCAAAAAATCAACGTCTGTAGGTACCCCGGGCCGGCACTTCATCGGCCCGGCCCACCGAAATTCTCGACGAGCCGGCCCGAGATTTCGCAACTATGGTAAAAATAATCAAATTTATTTTTTTTTCAAATCTTCTTTTGTTTAGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27193</snp_id>
        <super_contig>c002901562.Contig1</super_contig>
        <contig_pos>19991</contig_pos>
        <strand>+</strand>
        <context>GAAATTTTGA[C/T]AAGTAGAGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTATTGTAGTTACTAATCTAACAAGATTCCATTTTGATGGAAATTTTGA</left_flank>
        <right_flank>AAGTAGAGCTGTTTACTCCATCCCAGGAAAAGTTTTTAAATGATGGTTTA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCTATCAGACATGTCCGGGCTCCGCATATCGAATTCCGGATTCCGGATTCCGTGTTTTTTCACTCTGGATTTTTGATTTCGGGTTCCGTGAAATACATTTTGTTCGACTTCCAGATTTCGGATTTCAAGAAAATGATTTTATTCTGGATTTTCAGCAACTATGTTAATCTACGATAATTCTCTGAAGCGCGAGAATTGTTTTTAAACTTCCTAACGATGCAAACTTGAAGCGCCTATGTTTTTTTAAAGAATTTTTCTGAACACTGGAGATGTCCGAATTCCGAATTATTAATTTTATTCCGTGCATATTATTTTTTTACAGATTACGAATTCCGGATTCCAGAAAAATTGTTTTATTCTGGATTTCGGATTCCGTTTCTCGAAAAAGTCATTCTGGACATCTTTGCTTGAGAGTTGATGTAATTATAAAGACTAGATATCGTTGGGATTATTGTAGTTACTAATCTAACAAGATTCCATTTTGATGGAAATTTTGATAAGTAGAGCTGTTTACTCCATCCCAGGAAAAGTTTTTAAATGATGGTTTATCCTATTTTTACATTGTCAGTTTGCCATGTGCACGTAAAAGTAGATCACATTTCGTATTATCTCATTTTGGAACCTACTTATTAAAATGTCAAATTTGAAAAGTTTCCGGTTATTGGAAACGATTTTCAAAAACGACGAAAAGTTGAAACGCACACACACAGGCATCACACGCAAAAAGTAGCTGCGCAAGTGCTGTCGGAAAGGTTTCCTTTTCGTTTTTTTCCGTCCAACTACCGCACTTCAAAAAAATTTCACATATATATGTATTTGAAAGTGAAGCGGCATGTTCTATTCCGTCTCTCTTTCTCTATTTCTTTGTTGTTTGTTCATTTCGCTTCCTTCCGATTCGTGTACTCTCTCCCCTACCTTTTGCCTCCTACTTCTTCCTCTCCTTCTAGTTACCTAGGGGATATATGTACACTCTTTTTAAAAAAAATGCCTCAAAATCG</canonical>
            <polymorphic>TGTCTATCAGACATGTCCGGGCTCCGCATATCGAATTCCGGATTCCGGATTCCGTGTTTTTTCACTCTGGATTTTTGATTTCGGGTTCCGTGAAATACATTTTGTTCGACTTCCAGATTTCGGATTTCAAGAAAATGATTTTATTCTGGATTTTCAGCAACTATGTTAATCTACGATAATTCTCTGAAGCGCGAGAATTGTTTTTAAACTTCCTAACGATGCAAACTTGAAGCGCCTATGTTTTTTTAAAGAATTTTTCTGAACACTGGAGATGTCCGAATTCCGAATTATTAATTTTATTCCGTGCATATTATTTTTTTACAGATTACGAATTCCGGATTCCAGAAAAATTGTTTTATTCTGGATTTCGGATTCCGTTTCTCGAAAAAGTCATTCTGGACATCTTTGCTTGAGAGTTGATGTAATTATAAAGACTAGATATCGTTGGGATTATTGTAGTTACTAATCTAACAAGATTCCATTTTGATGGAAATTTTGAYAAGTAGAGCTGTTTACTCCATCCCAGGAAAAGTTTTTAAATGATGGTTTATCCTATTTTTACATTGTCAGTTTGCCATGTGCACGTAAAAGTAGATCACATTTCGTATTATCTCATTTTGGAACCTACTTATTAAAATGTCAAATTTGAAAAGTTTCCGGTTATTGGAAACGATTTTCAAAAACGACGAAAAGTTGAAACGCACACACACAGGCATCACACGCAAAAAGTAGCTGCGCAAGTGCTGTCGGAAAGGTTTCCTTTTCGTTTTTTTCCGTCCAACTACCGCACTTCAAAAAAATTTCACATATATATGTATTTGAAAGTGAAGCGGCATGTTCTATTCCGTCTCTCTTTCTCTATTTCTTTGTTGTTTGTTCATTTCGCTTCCTTCCGATTCGTGTACTCTCTCCCCTACCTTTTGCCTCCTACTTCTTCCTCTCCTTCTAGTTACCTAGGGGATATATGTACACTCTTTTTAAAAAAAATGCCTCAAAATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATATCGTTGGGATTATTGTAGT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAAATCGTTTCCAATAAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGATATCGTTGGGATTATTGTAGTTACTAATCTAACAAGATTCCATTTTGATGGAAATTTTGATAAGTAGAGCTGTTTACTCCATCCCAGGAAAAGTTTTTAAATGATGGTTTATCCTATTTTTACATTGTCAGTTTGCCATGTGCACGTAAAAGTAGATCACATTTCGTATTATCTCATTTTGGAACCTACTTATTAAAATGTCAAATTTGAAAAGTTTCCGGTTATTGGAAACGATTTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>AGATATCGTTGGGATTATTGTAGTTACTAATCTAACAAGATTCCATTTTGATGGAAATTTTGAYAAGTAGAGCTGTTTACTCCATCCCAGGAAAAGTTTTTAAATGATGGTTTATCCTATTTTTACATTGTCAGTTTGCCATGTGCACGTAAAAGTAGATCACATTTCGTATTATCTCATTTTGGAACCTACTTATTAAAATGTCAAATTTGAAAAGTTTCCGGTTATTGGAAACGATTTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27194</snp_id>
        <super_contig>c002901562.Contig1</super_contig>
        <contig_pos>20234</contig_pos>
        <strand>+</strand>
        <context>CTGCGCAAGT[G/T]CTGTCGGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTGAAACGCACACACACAGGCATCACACGCAAAAAGTAGCTGCGCAAGT</left_flank>
        <right_flank>CTGTCGGAAAGGTTTCCTTTTCGTTTTTTTCCGTCCAACTACCGCACTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTAAAGAATTTTTCTGAACACTGGAGATGTCCGAATTCCGAATTATTAATTTTATTCCGTGCATATTATTTTTTTACAGATTACGAATTCCGGATTCCAGAAAAATTGTTTTATTCTGGATTTCGGATTCCGTTTCTCGAAAAAGTCATTCTGGACATCTTTGCTTGAGAGTTGATGTAATTATAAAGACTAGATATCGTTGGGATTATTGTAGTTACTAATCTAACAAGATTCCATTTTGATGGAAATTTTGATAAGTAGAGCTGTTTACTCCATCCCAGGAAAAGTTTTTAAATGATGGTTTATCCTATTTTTACATTGTCAGTTTGCCATGTGCACGTAAAAGTAGATCACATTTCGTATTATCTCATTTTGGAACCTACTTATTAAAATGTCAAATTTGAAAAGTTTCCGGTTATTGGAAACGATTTTCAAAAACGACGAAAAGTTGAAACGCACACACACAGGCATCACACGCAAAAAGTAGCTGCGCAAGTGCTGTCGGAAAGGTTTCCTTTTCGTTTTTTTCCGTCCAACTACCGCACTTCAAAAAAATTTCACATATATATGTATTTGAAAGTGAAGCGGCATGTTCTATTCCGTCTCTCTTTCTCTATTTCTTTGTTGTTTGTTCATTTCGCTTCCTTCCGATTCGTGTACTCTCTCCCCTACCTTTTGCCTCCTACTTCTTCCTCTCCTTCTAGTTACCTAGGGGATATATGTACACTCTTTTTAAAAAAAATGCCTCAAAATCGTACAGATTTTGATGACGACGATCTAGAAAGCTATCTAGAAGGCTCTGTTTGGTCTGAAAAACCATCTGCTTCTGAAATTTTCTCGAATCGACCCGGAGACGTTATCAGTGTATTCCCCCATGCTTCACATTCCAATATGATTTATGGATATCCTTCGAACTTTCGAGAGACAGTTTTCCCGTAAATTTTCAATTATTCGTATAAAAGTAAAAGATGATTCCCCTTCCAGAACACAACGTGGTT</canonical>
            <polymorphic>TTTTAAAGAATTTTTCTGAACACTGGAGATGTCCGAATTCCGAATTATTAATTTTATTCCGTGCATATTATTTTTTTACAGATTACGAATTCCGGATTCCAGAAAAATTGTTTTATTCTGGATTTCGGATTCCGTTTCTCGAAAAAGTCATTCTGGACATCTTTGCTTGAGAGTTGATGTAATTATAAAGACTAGATATCGTTGGGATTATTGTAGTTACTAATCTAACAAGATTCCATTTTGATGGAAATTTTGATAAGTAGAGCTGTTTACTCCATCCCAGGAAAAGTTTTTAAATGATGGTTTATCCTATTTTTACATTGTCAGTTTGCCATGTGCACGTAAAAGTAGATCACATTTCGTATTATCTCATTTTGGAACCTACTTATTAAAATGTCAAATTTGAAAAGTTTCCGGTTATTGGAAACGATTTTCAAAAACGACGAAAAGTTGAAACGCACACACACAGGCATCACACGCAAAAAGTAGCTGCGCAAGTKCTGTCGGAAAGGTTTCCTTTTCGTTTTTTTCCGTCCAACTACCGCACTTCAAAAAAATTTCACATATATATGTATTTGAAAGTGAAGCGGCATGTTCTATTCCGTCTCTCTTTCTCTATTTCTTTGTTGTTTGTTCATTTCGCTTCCTTCCGATTCGTGTACTCTCTCCCCTACCTTTTGCCTCCTACTTCTTCCTCTCCTTCTAGTTACCTAGGGGATATATGTACACTCTTTTTAAAAAAAATGCCTCAAAATCGTACAGATTTTGATGACGACGATCTAGAAAGCTATCTAGAAGGCTCTGTTTGGTCTGAAAAACCATCTGCTTCTGAAATTTTCTCGAATCGACCCGGAGACGTTATCAGTGTATTCCCCCATGCTTCACATTCCAATATGATTTATGGATATCCTTCGAACTTTCGAGAGACAGTTTTCCCGTAAATTTTCAATTATTCGTATAAAAGTAAAAGATGATTCCCCTTCCAGAACACAACGTGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>275 139 106 105 75 69 46 41 23 22 22 17 16 15 9 7 3 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>275 139 106 105 75 69 69 41 22 22 17 16 15 9 7 3 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTCATTTTGGAACCTACTTATT</pcr_primer_p1>
		<pcr_primer_p2>GAGAAAGAGAGACGGAATAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTCATTTTGGAACCTACTTATTAAAATGTCAAATTTGAAAAGTTTCCGGTTATTGGAAACGATTTTCAAAAACGACGAAAAGTTGAAACGCACACACACAGGCATCACACGCAAAAAGTAGCTGCGCAAGTGCTGTCGGAAAGGTTTCCTTTTCGTTTTTTTCCGTCCAACTACCGCACTTCAAAAAAATTTCACATATATATGTATTTGAAAGTGAAGCGGCATGTTCTATTCCGTCTCTCTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>ATCTCATTTTGGAACCTACTTATTAAAATGTCAAATTTGAAAAGTTTCCGGTTATTGGAAACGATTTTCAAAAACGACGAAAAGTTGAAACGCACACACACAGGCATCACACGCAAAAAGTAGCTGCGCAAGTKCTGTCGGAAAGGTTTCCTTTTCGTTTTTTTCCGTCCAACTACCGCACTTCAAAAAAATTTCACATATATATGTATTTGAAAGTGAAGCGGCATGTTCTATTCCGTCTCTCTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27195</snp_id>
        <super_contig>c002901562.Contig1</super_contig>
        <contig_pos>20309</contig_pos>
        <strand>+</strand>
        <context>TATATATGTA[A/T]TTGAAAGTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTTCCGTCCAACTACCGCACTTCAAAAAAATTTCACATATATATGTA</left_flank>
        <right_flank>TTGAAAGTGAAGCGGCATGTTCTATTCCGTCTCTCTTTCTCTATTTCTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTACAGATTACGAATTCCGGATTCCAGAAAAATTGTTTTATTCTGGATTTCGGATTCCGTTTCTCGAAAAAGTCATTCTGGACATCTTTGCTTGAGAGTTGATGTAATTATAAAGACTAGATATCGTTGGGATTATTGTAGTTACTAATCTAACAAGATTCCATTTTGATGGAAATTTTGATAAGTAGAGCTGTTTACTCCATCCCAGGAAAAGTTTTTAAATGATGGTTTATCCTATTTTTACATTGTCAGTTTGCCATGTGCACGTAAAAGTAGATCACATTTCGTATTATCTCATTTTGGAACCTACTTATTAAAATGTCAAATTTGAAAAGTTTCCGGTTATTGGAAACGATTTTCAAAAACGACGAAAAGTTGAAACGCACACACACAGGCATCACACGCAAAAAGTAGCTGCGCAAGTGCTGTCGGAAAGGTTTCCTTTTCGTTTTTTTCCGTCCAACTACCGCACTTCAAAAAAATTTCACATATATATGTATTTGAAAGTGAAGCGGCATGTTCTATTCCGTCTCTCTTTCTCTATTTCTTTGTTGTTTGTTCATTTCGCTTCCTTCCGATTCGTGTACTCTCTCCCCTACCTTTTGCCTCCTACTTCTTCCTCTCCTTCTAGTTACCTAGGGGATATATGTACACTCTTTTTAAAAAAAATGCCTCAAAATCGTACAGATTTTGATGACGACGATCTAGAAAGCTATCTAGAAGGCTCTGTTTGGTCTGAAAAACCATCTGCTTCTGAAATTTTCTCGAATCGACCCGGAGACGTTATCAGTGTATTCCCCCATGCTTCACATTCCAATATGATTTATGGATATCCTTCGAACTTTCGAGAGACAGTTTTCCCGTAAATTTTCAATTATTCGTATAAAAGTAAAAGATGATTCCCCTTCCAGAACACAACGTGGTTCTACAGACCCCAGTTATGATGATTACTATACAAAGGTATCAACAATATTTAAACTCCAAGCCCAGATGGAGAAGG</canonical>
            <polymorphic>TTACAGATTACGAATTCCGGATTCCAGAAAAATTGTTTTATTCTGGATTTCGGATTCCGTTTCTCGAAAAAGTCATTCTGGACATCTTTGCTTGAGAGTTGATGTAATTATAAAGACTAGATATCGTTGGGATTATTGTAGTTACTAATCTAACAAGATTCCATTTTGATGGAAATTTTGATAAGTAGAGCTGTTTACTCCATCCCAGGAAAAGTTTTTAAATGATGGTTTATCCTATTTTTACATTGTCAGTTTGCCATGTGCACGTAAAAGTAGATCACATTTCGTATTATCTCATTTTGGAACCTACTTATTAAAATGTCAAATTTGAAAAGTTTCCGGTTATTGGAAACGATTTTCAAAAACGACGAAAAGTTGAAACGCACACACACAGGCATCACACGCAAAAAGTAGCTGCGCAAGTGCTGTCGGAAAGGTTTCCTTTTCGTTTTTTTCCGTCCAACTACCGCACTTCAAAAAAATTTCACATATATATGTAWTTGAAAGTGAAGCGGCATGTTCTATTCCGTCTCTCTTTCTCTATTTCTTTGTTGTTTGTTCATTTCGCTTCCTTCCGATTCGTGTACTCTCTCCCCTACCTTTTGCCTCCTACTTCTTCCTCTCCTTCTAGTTACCTAGGGGATATATGTACACTCTTTTTAAAAAAAATGCCTCAAAATCGTACAGATTTTGATGACGACGATCTAGAAAGCTATCTAGAAGGCTCTGTTTGGTCTGAAAAACCATCTGCTTCTGAAATTTTCTCGAATCGACCCGGAGACGTTATCAGTGTATTCCCCCATGCTTCACATTCCAATATGATTTATGGATATCCTTCGAACTTTCGAGAGACAGTTTTCCCGTAAATTTTCAATTATTCGTATAAAAGTAAAAGATGATTCCCCTTCCAGAACACAACGTGGTTCTACAGACCCCAGTTATGATGATTACTATACAAAGGTATCAACAATATTTAAACTCCAAGCCCAGATGGAGAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTGAAAAGTTTCCGGTTAT</pcr_primer_p1>
		<pcr_primer_p2>AAATGAACAAACAACAAAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>AATTTGAAAAGTTTCCGGTTATTGGAAACGATTTTCAAAAACGACGAAAAGTTGAAACGCACACACACAGGCATCACACGCAAAAAGTAGCTGCGCAAGTGCTGTCGGAAAGGTTTCCTTTTCGTTTTTTTCCGTCCAACTACCGCACTTCAAAAAAATTTCACATATATATGTATTTGAAAGTGAAGCGGCATGTTCTATTCCGTCTCTCTTTCTCTATTTCTTTGTTGTTTGTTCATTT</canonical_amplicon>
		<polymorphic_amplicon>AATTTGAAAAGTTTCCGGTTATTGGAAACGATTTTCAAAAACGACGAAAAGTTGAAACGCACACACACAGGCATCACACGCAAAAAGTAGCTGCGCAAGTGCTGTCGGAAAGGTTTCCTTTTCGTTTTTTTCCGTCCAACTACCGCACTTCAAAAAAATTTCACATATATATGTAWTTGAAAGTGAAGCGGCATGTTCTATTCCGTCTCTCTTTCTCTATTTCTTTGTTGTTTGTTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27196</snp_id>
        <super_contig>c002901562.Contig1</super_contig>
        <contig_pos>20421</contig_pos>
        <strand>+</strand>
        <context>TTTGCCTCCT[A/C]CTTCTTCCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTCGCTTCCTTCCGATTCGTGTACTCTCTCCCCTACCTTTTGCCTCCT</left_flank>
        <right_flank>CTTCTTCCTCTCCTTCTAGTTACCTAGGGGATATATGTACACTCTTTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGACTAGATATCGTTGGGATTATTGTAGTTACTAATCTAACAAGATTCCATTTTGATGGAAATTTTGATAAGTAGAGCTGTTTACTCCATCCCAGGAAAAGTTTTTAAATGATGGTTTATCCTATTTTTACATTGTCAGTTTGCCATGTGCACGTAAAAGTAGATCACATTTCGTATTATCTCATTTTGGAACCTACTTATTAAAATGTCAAATTTGAAAAGTTTCCGGTTATTGGAAACGATTTTCAAAAACGACGAAAAGTTGAAACGCACACACACAGGCATCACACGCAAAAAGTAGCTGCGCAAGTGCTGTCGGAAAGGTTTCCTTTTCGTTTTTTTCCGTCCAACTACCGCACTTCAAAAAAATTTCACATATATATGTATTTGAAAGTGAAGCGGCATGTTCTATTCCGTCTCTCTTTCTCTATTTCTTTGTTGTTTGTTCATTTCGCTTCCTTCCGATTCGTGTACTCTCTCCCCTACCTTTTGCCTCCTACTTCTTCCTCTCCTTCTAGTTACCTAGGGGATATATGTACACTCTTTTTAAAAAAAATGCCTCAAAATCGTACAGATTTTGATGACGACGATCTAGAAAGCTATCTAGAAGGCTCTGTTTGGTCTGAAAAACCATCTGCTTCTGAAATTTTCTCGAATCGACCCGGAGACGTTATCAGTGTATTCCCCCATGCTTCACATTCCAATATGATTTATGGATATCCTTCGAACTTTCGAGAGACAGTTTTCCCGTAAATTTTCAATTATTCGTATAAAAGTAAAAGATGATTCCCCTTCCAGAACACAACGTGGTTCTACAGACCCCAGTTATGATGATTACTATACAAAGGTATCAACAATATTTAAACTCCAAGCCCAGATGGAGAAGGTTTTTTGGATAACCCAATTGAAAATTTTTAATAAGATTAAAAAAAATTTTTTTTCTGAGTTTCCGCATATTAGAACTTTGGAATTAGACCACTTATAAATTTCTGATTAGCA</canonical>
            <polymorphic>AAGACTAGATATCGTTGGGATTATTGTAGTTACTAATCTAACAAGATTCCATTTTGATGGAAATTTTGATAAGTAGAGCTGTTTACTCCATCCCAGGAAAAGTTTTTAAATGATGGTTTATCCTATTTTTACATTGTCAGTTTGCCATGTGCACGTAAAAGTAGATCACATTTCGTATTATCTCATTTTGGAACCTACTTATTAAAATGTCAAATTTGAAAAGTTTCCGGTTATTGGAAACGATTTTCAAAAACGACGAAAAGTTGAAACGCACACACACAGGCATCACACGCAAAAAGTAGCTGCGCAAGTGCTGTCGGAAAGGTTTCCTTTTCGTTTTTTTCCGTCCAACTACCGCACTTCAAAAAAATTTCACATATATATGTATTTGAAAGTGAAGCGGCATGTTCTATTCCGTCTCTCTTTCTCTATTTCTTTGTTGTTTGTTCATTTCGCTTCCTTCCGATTCGTGTACTCTCTCCCCTACCTTTTGCCTCCTMCTTCTTCCTCTCCTTCTAGTTACCTAGGGGATATATGTACACTCTTTTTAAAAAAAATGCCTCAAAATCGTACAGATTTTGATGACGACGATCTAGAAAGCTATCTAGAAGGCTCTGTTTGGTCTGAAAAACCATCTGCTTCTGAAATTTTCTCGAATCGACCCGGAGACGTTATCAGTGTATTCCCCCATGCTTCACATTCCAATATGATTTATGGATATCCTTCGAACTTTCGAGAGACAGTTTTCCCGTAAATTTTCAATTATTCGTATAAAAGTAAAAGATGATTCCCCTTCCAGAACACAACGTGGTTCTACAGACCCCAGTTATGATGATTACTATACAAAGGTATCAACAATATTTAAACTCCAAGCCCAGATGGAGAAGGTTTTTTGGATAACCCAATTGAAAATTTTTAATAAGATTAAAAAAAATTTTTTTTCTGAGTTTCCGCATATTAGAACTTTGGAATTAGACCACTTATAAATTTCTGATTAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTTCTATTCCGTCTCTCTTTC</pcr_primer_p1>
		<pcr_primer_p2>GAGAAAATTTCAGAAGCAGATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGTTCTATTCCGTCTCTCTTTCTCTATTTCTTTGTTGTTTGTTCATTTCGCTTCCTTCCGATTCGTGTACTCTCTCCCCTACCTTTTGCCTCCTACTTCTTCCTCTCCTTCTAGTTACCTAGGGGATATATGTACACTCTTTTTAAAAAAAATGCCTCAAAATCGTACAGATTTTGATGACGACGATCTAGAAAGCTATCTAGAAGGCTCTGTTTGGTCTGAAAAACCATCTGCTTCTGAAATTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>ATGTTCTATTCCGTCTCTCTTTCTCTATTTCTTTGTTGTTTGTTCATTTCGCTTCCTTCCGATTCGTGTACTCTCTCCCCTACCTTTTGCCTCCTMCTTCTTCCTCTCCTTCTAGTTACCTAGGGGATATATGTACACTCTTTTTAAAAAAAATGCCTCAAAATCGTACAGATTTTGATGACGACGATCTAGAAAGCTATCTAGAAGGCTCTGTTTGGTCTGAAAAACCATCTGCTTCTGAAATTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27197</snp_id>
        <super_contig>c003000925.Contig2</super_contig>
        <contig_pos>9149</contig_pos>
        <strand></strand>
        <context>aaagtatata[T/A]tctttgaagg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GCCGATTTCTTTCCCAAATCTCACATTTTTGGCCAGACCTAAAGTATATA</left_flank>
        <right_flank>TCTTTGAAGGGCTAAAAAAGTATTCTAGAACTTTTCAATGTTTGTGAAAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTATTGATTGATTACCGTACTAAACTTGGTATTTCCTGTTTCAGTTTATTTAAAACAAAATAAACACCACCATCATCATAATGTCACTTTATAATAACCAAAAAAACCATAATAGTGTAAAAAGGGGGAGAAACCGGATTTAGGACACAGGGCATTTTGGAGGGGTTGTTTTTTTTGGATGGGGTCTCATCATCACAAAATTTTTAGTTTTTAGTACTGCTTTGATTTTATTAGTTTGTAAATTTAATGAAATTTGGACCTAATTTAGACAGAAATGTTTTAATTTGCCCCCTGAAAATCTTAGTCGCTCCAGGAATTCTGAAACAATGTTTTTAAAATTTTGAGAAACTTTTTTGTGAGAATGTTATAATTTTTCAAGACCTCGAATTTGGAATCCCTCAAAATCTAGTCATTTTTAGCTGATTTCTAAGAAAAAGGTTATCTGGGCCGATTTCTTTCCCAAATCTCACATTTTTGGCCAGACCTAAAGTATATATTCTTTGAAGGGCTAAAAAAGTATTCTAGAACTTTTCAATGTTTGTGAAACATTTAGAGTACACTAAACAAAAAGAGAGCTTCATTTTTCTAGTTGACGACTTTTTTCTAAAATTTAGTCCTGAGGAGCACATCTCCTTAGAATTGAATTTTACGAAAAAGTTGTCAATTACAAAAATAAAGCTCTATTTTTGTTCAGTATGCTATAAAATTTTCAGAGAAATCGAAAAATTATGAAGTTATTTTGTAGAGCTTTAAACATCACTATCTTTCAACGAAAAAGTCAAAATAAGTTGTAGTTCTTTTGTGTACCGTACCACTTGAATTTCCTTGATTCTTGGAATTTTGAGACATAAACTCTAAGCCATTTTTCGCTGAATTTCAGAAACAAGGTGGTATTTTTTAGGTCGAGTTTTTGGTCACAGATACCTTACATGCTCTGTCAGAGTAGTATCTCTATTTTTCATATTCAAAATCATAACGAGACTCCTAGCTCATCTGG</canonical>
            <polymorphic>GAATTATTGATTGATTACCGTACTAAACTTGGTATTTCCTGTTTCAGTTTATTTAAAACAAAATAAACACCACCATCATCATAATGTCACTTTATAATAACCAAAAAAACCATAATAGTGTAAAAAGGGGGAGAAACCGGATTTAGGACACAGGGCATTTTGGAGGGGTTGTTTTTTTTGGATGGGGTCTCATCATCACAAAATTTTTAGTTTTTAGTACTGCTTTGATTTTATTAGTTTGTAAATTTAATGAAATTTGGACCTAATTTAGACAGAAATGTTTTAATTTGCCCCCTGAAAATCTTAGTCGCTCCAGGAATTCTGAAACAATGTTTTTAAAATTTTGAGAAACTTTTTTGTGAGAATGTTATAATTTTTCAAGACCTCGAATTTGGAATCCCTCAAAATCTAGTCATTTTTAGCTGATTTCTAAGAAAAAGGTTATCTGGGCCGATTTCTTTCCCAAATCTCACATTTTTGGCCAGACCTAAAGTATATAWTCTTTGAAGGGCTAAAAAAGTATTCTAGAACTTTTCAATGTTTGTGAAACATTTAGAGTACACTAAACAAAAAGAGAGCTTCATTTTTCTAGTTGACGACTTTTTTCTAAAATTTAGTCCTGAGGAGCACATCTCCTTAGAATTGAATTTTACGAAAAAGTTGTCAATTACAAAAATAAAGCTCTATTTTTGTTCAGTATGCTATAAAATTTTCAGAGAAATCGAAAAATTATGAAGTTATTTTGTAGAGCTTTAAACATCACTATCTTTCAACGAAAAAGTCAAAATAAGTTGTAGTTCTTTTGTGTACCGTACCACTTGAATTTCCTTGATTCTTGGAATTTTGAGACATAAACTCTAAGCCATTTTTCGCTGAATTTCAGAAACAAGGTGGTATTTTTTAGGTCGAGTTTTTGGTCACAGATACCTTACATGCTCTGTCAGAGTAGTATCTCTATTTTTCATATTCAAAATCATAACGAGACTCCTAGCTCATCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGTCATTTTTAGCTGATTTCTAAG</pcr_primer_p1>
		<pcr_primer_p2>CGGTACACAAAAGAACTACAACT</pcr_primer_p2>
		<pcr_amplicon_size>404</pcr_amplicon_size>
		<canonical_amplicon>CTAGTCATTTTTAGCTGATTTCTAAGAAAAAGGTTATCTGGGCCGATTTCTTTCCCAAATCTCACATTTTTGGCCAGACCTAAAGTATATATTCTTTGAAGGGCTAAAAAAGTATTCTAGAACTTTTCAATGTTTGTGAAACATTTAGAGTACACTAAACAAAAAGAGAGCTTCATTTTTCTAGTTGACGACTTTTTTCTAAAATTTAGTCCTGAGGAGCACATCTCCTTAGAATTGAATTTTACGAAAAAGTTGTCAATTACAAAAATAAAGCTCTATTTTTGTTCAGTATGCTATAAAATTTTCAGAGAAATCGAAAAATTATGAAGTTATTTTGTAGAGCTTTAAACATCACTATCTTTCAACGAAAAAGTCAAAATAAGTTGTAGTTCTTTTGTGTACCG</canonical_amplicon>
		<polymorphic_amplicon>CTAGTCATTTTTAGCTGATTTCTAAGAAAAAGGTTATCTGGGCCGATTTCTTTCCCAAATCTCACATTTTTGGCCAGACCTAAAGTATATAWTCTTTGAAGGGCTAAAAAAGTATTCTAGAACTTTTCAATGTTTGTGAAACATTTAGAGTACACTAAACAAAAAGAGAGCTTCATTTTTCTAGTTGACGACTTTTTTCTAAAATTTAGTCCTGAGGAGCACATCTCCTTAGAATTGAATTTTACGAAAAAGTTGTCAATTACAAAAATAAAGCTCTATTTTTGTTCAGTATGCTATAAAATTTTCAGAGAAATCGAAAAATTATGAAGTTATTTTGTAGAGCTTTAAACATCACTATCTTTCAACGAAAAAGTCAAAATAAGTTGTAGTTCTTTTGTGTACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27198</snp_id>
        <super_contig>c003000925.Contig2</super_contig>
        <contig_pos>9293</contig_pos>
        <strand></strand>
        <context>tccttagaat[T/C]gaattttacg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGACGACTTTTTTCTAAAATTTAGTCCTGAGGAGCACATCTCCTTAGAAT</left_flank>
        <right_flank>GAATTTTACGAAAAAGTTGTCAATTACAAAAATAAAGCTCTATTTTTGTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGACACAGGGCATTTTGGAGGGGTTGTTTTTTTTGGATGGGGTCTCATCATCACAAAATTTTTAGTTTTTAGTACTGCTTTGATTTTATTAGTTTGTAAATTTAATGAAATTTGGACCTAATTTAGACAGAAATGTTTTAATTTGCCCCCTGAAAATCTTAGTCGCTCCAGGAATTCTGAAACAATGTTTTTAAAATTTTGAGAAACTTTTTTGTGAGAATGTTATAATTTTTCAAGACCTCGAATTTGGAATCCCTCAAAATCTAGTCATTTTTAGCTGATTTCTAAGAAAAAGGTTATCTGGGCCGATTTCTTTCCCAAATCTCACATTTTTGGCCAGACCTAAAGTATATATTCTTTGAAGGGCTAAAAAAGTATTCTAGAACTTTTCAATGTTTGTGAAACATTTAGAGTACACTAAACAAAAAGAGAGCTTCATTTTTCTAGTTGACGACTTTTTTCTAAAATTTAGTCCTGAGGAGCACATCTCCTTAGAATTGAATTTTACGAAAAAGTTGTCAATTACAAAAATAAAGCTCTATTTTTGTTCAGTATGCTATAAAATTTTCAGAGAAATCGAAAAATTATGAAGTTATTTTGTAGAGCTTTAAACATCACTATCTTTCAACGAAAAAGTCAAAATAAGTTGTAGTTCTTTTGTGTACCGTACCACTTGAATTTCCTTGATTCTTGGAATTTTGAGACATAAACTCTAAGCCATTTTTCGCTGAATTTCAGAAACAAGGTGGTATTTTTTAGGTCGAGTTTTTGGTCACAGATACCTTACATGCTCTGTCAGAGTAGTATCTCTATTTTTCATATTCAAAATCATAACGAGACTCCTAGCTCATCTGGGAGCTTTGACCTGATTTATCTAGATCCATGGGAGAGATATCGAAAACCTGACAACTAATAAAATGTCTGTCATGTTATAATAAACAGTTTATTAGTTGACAGGTTATTGATATGTTTTATAGGAACCTAGATAATTGAGCTCAA</canonical>
            <polymorphic>AGGACACAGGGCATTTTGGAGGGGTTGTTTTTTTTGGATGGGGTCTCATCATCACAAAATTTTTAGTTTTTAGTACTGCTTTGATTTTATTAGTTTGTAAATTTAATGAAATTTGGACCTAATTTAGACAGAAATGTTTTAATTTGCCCCCTGAAAATCTTAGTCGCTCCAGGAATTCTGAAACAATGTTTTTAAAATTTTGAGAAACTTTTTTGTGAGAATGTTATAATTTTTCAAGACCTCGAATTTGGAATCCCTCAAAATCTAGTCATTTTTAGCTGATTTCTAAGAAAAAGGTTATCTGGGCCGATTTCTTTCCCAAATCTCACATTTTTGGCCAGACCTAAAGTATATATTCTTTGAAGGGCTAAAAAAGTATTCTAGAACTTTTCAATGTTTGTGAAACATTTAGAGTACACTAAACAAAAAGAGAGCTTCATTTTTCTAGTTGACGACTTTTTTCTAAAATTTAGTCCTGAGGAGCACATCTCCTTAGAATYGAATTTTACGAAAAAGTTGTCAATTACAAAAATAAAGCTCTATTTTTGTTCAGTATGCTATAAAATTTTCAGAGAAATCGAAAAATTATGAAGTTATTTTGTAGAGCTTTAAACATCACTATCTTTCAACGAAAAAGTCAAAATAAGTTGTAGTTCTTTTGTGTACCGTACCACTTGAATTTCCTTGATTCTTGGAATTTTGAGACATAAACTCTAAGCCATTTTTCGCTGAATTTCAGAAACAAGGTGGTATTTTTTAGGTCGAGTTTTTGGTCACAGATACCTTACATGCTCTGTCAGAGTAGTATCTCTATTTTTCATATTCAAAATCATAACGAGACTCCTAGCTCATCTGGGAGCTTTGACCTGATTTATCTAGATCCATGGGAGAGATATCGAAAACCTGACAACTAATAAAATGTCTGTCATGTTATAATAAACAGTTTATTAGTTGACAGGTTATTGATATGTTTTATAGGAACCTAGATAATTGAGCTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>257 222 94 57 42 42 36 33 32 30 22 20 20 20 18 17 12 11 10 5</canonical_bands>
                <polymorphic_bands>257 222 94 57 42 42 36 35 33 32 22 20 20 20 18 17 12 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGTCATTTTTAGCTGATTTCTAAG</pcr_primer_p1>
		<pcr_primer_p2>CGGTACACAAAAGAACTACAACT</pcr_primer_p2>
		<pcr_amplicon_size>404</pcr_amplicon_size>
		<canonical_amplicon>CTAGTCATTTTTAGCTGATTTCTAAGAAAAAGGTTATCTGGGCCGATTTCTTTCCCAAATCTCACATTTTTGGCCAGACCTAAAGTATATATTCTTTGAAGGGCTAAAAAAGTATTCTAGAACTTTTCAATGTTTGTGAAACATTTAGAGTACACTAAACAAAAAGAGAGCTTCATTTTTCTAGTTGACGACTTTTTTCTAAAATTTAGTCCTGAGGAGCACATCTCCTTAGAATTGAATTTTACGAAAAAGTTGTCAATTACAAAAATAAAGCTCTATTTTTGTTCAGTATGCTATAAAATTTTCAGAGAAATCGAAAAATTATGAAGTTATTTTGTAGAGCTTTAAACATCACTATCTTTCAACGAAAAAGTCAAAATAAGTTGTAGTTCTTTTGTGTACCG</canonical_amplicon>
		<polymorphic_amplicon>CTAGTCATTTTTAGCTGATTTCTAAGAAAAAGGTTATCTGGGCCGATTTCTTTCCCAAATCTCACATTTTTGGCCAGACCTAAAGTATATATTCTTTGAAGGGCTAAAAAAGTATTCTAGAACTTTTCAATGTTTGTGAAACATTTAGAGTACACTAAACAAAAAGAGAGCTTCATTTTTCTAGTTGACGACTTTTTTCTAAAATTTAGTCCTGAGGAGCACATCTCCTTAGAATYGAATTTTACGAAAAAGTTGTCAATTACAAAAATAAAGCTCTATTTTTGTTCAGTATGCTATAAAATTTTCAGAGAAATCGAAAAATTATGAAGTTATTTTGTAGAGCTTTAAACATCACTATCTTTCAACGAAAAAGTCAAAATAAGTTGTAGTTCTTTTGTGTACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27199</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>36801</contig_pos>
        <strand></strand>
        <context>GAGTGTTAAA[G/T]GTATACAGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTCGGGCTAAAATTTGACGATTCCGGTGGCTTTCTATTGGAGTGTTAAA</left_flank>
        <right_flank>GTATACAGGGTGCGGCAAAAGTATTGATACAAAAAGAAGACGCCATAACT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCATGCGGACGACTTTTTCAAAGACTTCGACGAGAAGTCCGACGATTGAGACAGAACTTTTCATTACATCGAAAGATGATTTCGAAACTTCGTCGAGATAATCAAAACCTAGAGGCCGAATTGAAGAAAAAGAATGCGTTGTTGAGGAACCGTCAATCTGCAGGATCGTGTCCAATATGCTTTGAAGAGTTCGAGGATACTTTCTGCAGGGAAGCAGTCATGGGTTAGCTTTTTTTTTGAAACACCGACCGGAAAATCCACAAGGTCAAGCTAAAAAATAAATTTTTAGCAACGCATTTACGTAAACACTCTAATAGAACGTCAACCGGACCGTCCACTTTAAGCCTACATATCTCACTTCTTTTGTCCACTAATAAAATGTTTATCATGATATCAGCAACATTTTATTAGTTAACCACTTTTTGATATCTCTCACAGAAAATGAGATACTCGGGCTAAAATTTGACGATTCCGGTGGCTTTCTATTGGAGTGTTAAAGGTATACAGGGTGCGGCAAAAGTATTGATACAAAAAGAAGACGCCATAACTCCTCGATAAATCCAATCCGGGTCAAATTTTAACAGGACTTTATCAATAGGATTTGTAACAAAATTGAATCATAGTTGTTTGTTTCTAATGGCGGGGCTCAACTTCTTCGGATGACGTTTATGCTGGCACGGGGGCGGTCTGCCGGCAAATGGTCCCATTCCGTGGAAGGAGTTTTTTTGAGAGCATCCAAAATGGTGTTAAAACAAACTTGAACACATGCGTAAAGAGTTCCTTGTACGAAAATCTCAATCGATTTGTGATCTGACTCAAGACAGGCCATTCTTTTTCGTGGATCAAATTGCAGAAGTTGACGTGGTACTCCTGCTGAACATGTTTTGCCGTCTGAGCAGGCGCTATGTATTTTTGGGATATCTGCATTTGCTATTCAAAGTTAGATTATGATTCAGGCAGTATGATTTCCACTAGAAGTAGTATTCTTGGTACACTTAC</canonical>
            <polymorphic>ACCATGCGGACGACTTTTTCAAAGACTTCGACGAGAAGTCCGACGATTGAGACAGAACTTTTCATTACATCGAAAGATGATTTCGAAACTTCGTCGAGATAATCAAAACCTAGAGGCCGAATTGAAGAAAAAGAATGCGTTGTTGAGGAACCGTCAATCTGCAGGATCGTGTCCAATATGCTTTGAAGAGTTCGAGGATACTTTCTGCAGGGAAGCAGTCATGGGTTAGCTTTTTTTTTGAAACACCGACCGGAAAATCCACAAGGTCAAGCTAAAAAATAAATTTTTAGCAACGCATTTACGTAAACACTCTAATAGAACGTCAACCGGACCGTCCACTTTAAGCCTACATATCTCACTTCTTTTGTCCACTAATAAAATGTTTATCATGATATCAGCAACATTTTATTAGTTAACCACTTTTTGATATCTCTCACAGAAAATGAGATACTCGGGCTAAAATTTGACGATTCCGGTGGCTTTCTATTGGAGTGTTAAAKGTATACAGGGTGCGGCAAAAGTATTGATACAAAAAGAAGACGCCATAACTCCTCGATAAATCCAATCCGGGTCAAATTTTAACAGGACTTTATCAATAGGATTTGTAACAAAATTGAATCATAGTTGTTTGTTTCTAATGGCGGGGCTCAACTTCTTCGGATGACGTTTATGCTGGCACGGGGGCGGTCTGCCGGCAAATGGTCCCATTCCGTGGAAGGAGTTTTTTTGAGAGCATCCAAAATGGTGTTAAAACAAACTTGAACACATGCGTAAAGAGTTCCTTGTACGAAAATCTCAATCGATTTGTGATCTGACTCAAGACAGGCCATTCTTTTTCGTGGATCAAATTGCAGAAGTTGACGTGGTACTCCTGCTGAACATGTTTTGCCGTCTGAGCAGGCGCTATGTATTTTTGGGATATCTGCATTTGCTATTCAAAGTTAGATTATGATTCAGGCAGTATGATTTCCACTAGAAGTAGTATTCTTGGTACACTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACTTTAAGCCTACATATCTCA</pcr_primer_p1>
		<pcr_primer_p2>GATTGGATTTATCGAGGAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>CCACTTTAAGCCTACATATCTCACTTCTTTTGTCCACTAATAAAATGTTTATCATGATATCAGCAACATTTTATTAGTTAACCACTTTTTGATATCTCTCACAGAAAATGAGATACTCGGGCTAAAATTTGACGATTCCGGTGGCTTTCTATTGGAGTGTTAAAGGTATACAGGGTGCGGCAAAAGTATTGATACAAAAAGAAGACGCCATAACTCCTCGATAAATCCAATC</canonical_amplicon>
		<polymorphic_amplicon>CCACTTTAAGCCTACATATCTCACTTCTTTTGTCCACTAATAAAATGTTTATCATGATATCAGCAACATTTTATTAGTTAACCACTTTTTGATATCTCTCACAGAAAATGAGATACTCGGGCTAAAATTTGACGATTCCGGTGGCTTTCTATTGGAGTGTTAAAKGTATACAGGGTGCGGCAAAAGTATTGATACAAAAAGAAGACGCCATAACTCCTCGATAAATCCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27200</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>36964</contig_pos>
        <strand></strand>
        <context>TTCTTCGGAT[G/T]RCGTTTATGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTGAATCATAGTTGTTTGTTTCTAATGGCGGGGCTCAACTTCTTCGGAT</left_flank>
        <right_flank>ACGTTTATGCTGGCACGGGGGCGGTCTGCCGGCAAATGGTCCCATTCCGT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATCGTGTCCAATATGCTTTGAAGAGTTCGAGGATACTTTCTGCAGGGAAGCAGTCATGGGTTAGCTTTTTTTTTGAAACACCGACCGGAAAATCCACAAGGTCAAGCTAAAAAATAAATTTTTAGCAACGCATTTACGTAAACACTCTAATAGAACGTCAACCGGACCGTCCACTTTAAGCCTACATATCTCACTTCTTTTGTCCACTAATAAAATGTTTATCATGATATCAGCAACATTTTATTAGTTAACCACTTTTTGATATCTCTCACAGAAAATGAGATACTCGGGCTAAAATTTGACGATTCCGGTGGCTTTCTATTGGAGTGTTAAAGGTATACAGGGTGCGGCAAAAGTATTGATACAAAAAGAAGACGCCATAACTCCTCGATAAATCCAATCCGGGTCAAATTTTAACAGGACTTTATCAATAGGATTTGTAACAAAATTGAATCATAGTTGTTTGTTTCTAATGGCGGGGCTCAACTTCTTCGGATGACGTTTATGCTGGCACGGGGGCGGTCTGCCGGCAAATGGTCCCATTCCGTGGAAGGAGTTTTTTTGAGAGCATCCAAAATGGTGTTAAAACAAACTTGAACACATGCGTAAAGAGTTCCTTGTACGAAAATCTCAATCGATTTGTGATCTGACTCAAGACAGGCCATTCTTTTTCGTGGATCAAATTGCAGAAGTTGACGTGGTACTCCTGCTGAACATGTTTTGCCGTCTGAGCAGGCGCTATGTATTTTTGGGATATCTGCATTTGCTATTCAAAGTTAGATTATGATTCAGGCAGTATGATTTCCACTAGAAGTAGTATTCTTGGTACACTTACAAACCTGGCTCCACCAAAAACAGTGGTTTTTTCTCATTTGAAGTGCTTCCTCCAAAAGTCATGGTTTGCTGAAGATTGGCTCTTCAGAGAATCAACAGACCATTACTGTTAGATAGCCAAGGACATTGTGCCTATACATGCCAATTTTTAGAATTGAGTTTTG</canonical>
            <polymorphic>GGATCGTGTCCAATATGCTTTGAAGAGTTCGAGGATACTTTCTGCAGGGAAGCAGTCATGGGTTAGCTTTTTTTTTGAAACACCGACCGGAAAATCCACAAGGTCAAGCTAAAAAATAAATTTTTAGCAACGCATTTACGTAAACACTCTAATAGAACGTCAACCGGACCGTCCACTTTAAGCCTACATATCTCACTTCTTTTGTCCACTAATAAAATGTTTATCATGATATCAGCAACATTTTATTAGTTAACCACTTTTTGATATCTCTCACAGAAAATGAGATACTCGGGCTAAAATTTGACGATTCCGGTGGCTTTCTATTGGAGTGTTAAAGGTATACAGGGTGCGGCAAAAGTATTGATACAAAAAGAAGACGCCATAACTCCTCGATAAATCCAATCCGGGTCAAATTTTAACAGGACTTTATCAATAGGATTTGTAACAAAATTGAATCATAGTTGTTTGTTTCTAATGGCGGGGCTCAACTTCTTCGGATKACGTTTATGCTGGCACGGGGGCGGTCTGCCGGCAAATGGTCCCATTCCGTGGAAGGAGTTTTTTTGAGAGCATCCAAAATGGTGTTAAAACAAACTTGAACACATGCGTAAAGAGTTCCTTGTACGAAAATCTCAATCGATTTGTGATCTGACTCAAGACAGGCCATTCTTTTTCGTGGATCAAATTGCAGAAGTTGACGTGGTACTCCTGCTGAACATGTTTTGCCGTCTGAGCAGGCGCTATGTATTTTTGGGATATCTGCATTTGCTATTCAAAGTTAGATTATGATTCAGGCAGTATGATTTCCACTAGAAGTAGTATTCTTGGTACACTTACAAACCTGGCTCCACCAAAAACAGTGGTTTTTTCTCATTTGAAGTGCTTCCTCCAAAAGTCATGGTTTGCTGAAGATTGGCTCTTCAGAGAATCAACAGACCATTACTGTTAGATAGCCAAGGACATTGTGCCTATACATGCCAATTTTTAGAATTGAGTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATTGAATCATAGTTGTTTGT</pcr_primer_p1>
		<pcr_primer_p2>TTCAGCAAACCATGACTTTT</pcr_primer_p2>
		<pcr_amplicon_size>465</pcr_amplicon_size>
		<canonical_amplicon>CAAAATTGAATCATAGTTGTTTGTTTCTAATGGCGGGGCTCAACTTCTTCGGATGACGTTTATGCTGGCACGGGGGCGGTCTGCCGGCAAATGGTCCCATTCCGTGGAAGGAGTTTTTTTGAGAGCATCCAAAATGGTGTTAAAACAAACTTGAACACATGCGTAAAGAGTTCCTTGTACGAAAATCTCAATCGATTTGTGATCTGACTCAAGACAGGCCATTCTTTTTCGTGGATCAAATTGCAGAAGTTGACGTGGTACTCCTGCTGAACATGTTTTGCCGTCTGAGCAGGCGCTATGTATTTTTGGGATATCTGCATTTGCTATTCAAAGTTAGATTATGATTCAGGCAGTATGATTTCCACTAGAAGTAGTATTCTTGGTACACTTACAAACCTGGCTCCACCAAAAACAGTGGTTTTTTCTCATTTGAAGTGCTTCCTCCAAAAGTCATGGTTTGCTGAA</canonical_amplicon>
		<polymorphic_amplicon>CAAAATTGAATCATAGTTGTTTGTTTCTAATGGCGGGGCTCAACTTCTTCGGATKACGTTTATGCTGGCACGGGGGCGGTCTGCCGGCAAATGGTCCCATTCCGTGGAAGGAGTTTTTTTGAGAGCATCCAAAATGGTGTTAAAACAAACTTGAACACATGCGTAAAGAGTTCCTTGTACGAAAATCTCAATCGATTTGTGATCTGACTCAAGACAGGCCATTCTTTTTCGTGGATCAAATTGCAGAAGTTGACGTGGTACTCCTGCTGAACATGTTTTGCCGTCTGAGCAGGCGCTATGTATTTTTGGGATATCTGCATTTGCTATTCAAAGTTAGATTATGATTCAGGCAGTATGATTTCCACTAGAAGTAGTATTCTTGGTACACTTACAAACCTGGCTCCACCAAAAACAGTGGTTTTTTCTCATTTGAAGTGCTTCCTCCAAAAGTCATGGTTTGCTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27201</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>36965</contig_pos>
        <strand></strand>
        <context>TCTTCGGATK[A/G]CGTTTATGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAATCATAGTTGTTTGTTTCTAATGGCGGGGCTCAACTTCTTCGGATG</left_flank>
        <right_flank>CGTTTATGCTGGCACGGGGGCGGTCTGCCGGCAAATGGTCCCATTCCGTG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATCGTGTCCAATATGCTTTGAAGAGTTCGAGGATACTTTCTGCAGGGAAGCAGTCATGGGTTAGCTTTTTTTTTGAAACACCGACCGGAAAATCCACAAGGTCAAGCTAAAAAATAAATTTTTAGCAACGCATTTACGTAAACACTCTAATAGAACGTCAACCGGACCGTCCACTTTAAGCCTACATATCTCACTTCTTTTGTCCACTAATAAAATGTTTATCATGATATCAGCAACATTTTATTAGTTAACCACTTTTTGATATCTCTCACAGAAAATGAGATACTCGGGCTAAAATTTGACGATTCCGGTGGCTTTCTATTGGAGTGTTAAAGGTATACAGGGTGCGGCAAAAGTATTGATACAAAAAGAAGACGCCATAACTCCTCGATAAATCCAATCCGGGTCAAATTTTAACAGGACTTTATCAATAGGATTTGTAACAAAATTGAATCATAGTTGTTTGTTTCTAATGGCGGGGCTCAACTTCTTCGGATGACGTTTATGCTGGCACGGGGGCGGTCTGCCGGCAAATGGTCCCATTCCGTGGAAGGAGTTTTTTTGAGAGCATCCAAAATGGTGTTAAAACAAACTTGAACACATGCGTAAAGAGTTCCTTGTACGAAAATCTCAATCGATTTGTGATCTGACTCAAGACAGGCCATTCTTTTTCGTGGATCAAATTGCAGAAGTTGACGTGGTACTCCTGCTGAACATGTTTTGCCGTCTGAGCAGGCGCTATGTATTTTTGGGATATCTGCATTTGCTATTCAAAGTTAGATTATGATTCAGGCAGTATGATTTCCACTAGAAGTAGTATTCTTGGTACACTTACAAACCTGGCTCCACCAAAAACAGTGGTTTTTTCTCATTTGAAGTGCTTCCTCCAAAAGTCATGGTTTGCTGAAGATTGGCTCTTCAGAGAATCAACAGACCATTACTGTTAGATAGCCAAGGACATTGTGCCTATACATGCCAATTTTTAGAATTGAGTTTTGC</canonical>
            <polymorphic>GATCGTGTCCAATATGCTTTGAAGAGTTCGAGGATACTTTCTGCAGGGAAGCAGTCATGGGTTAGCTTTTTTTTTGAAACACCGACCGGAAAATCCACAAGGTCAAGCTAAAAAATAAATTTTTAGCAACGCATTTACGTAAACACTCTAATAGAACGTCAACCGGACCGTCCACTTTAAGCCTACATATCTCACTTCTTTTGTCCACTAATAAAATGTTTATCATGATATCAGCAACATTTTATTAGTTAACCACTTTTTGATATCTCTCACAGAAAATGAGATACTCGGGCTAAAATTTGACGATTCCGGTGGCTTTCTATTGGAGTGTTAAAGGTATACAGGGTGCGGCAAAAGTATTGATACAAAAAGAAGACGCCATAACTCCTCGATAAATCCAATCCGGGTCAAATTTTAACAGGACTTTATCAATAGGATTTGTAACAAAATTGAATCATAGTTGTTTGTTTCTAATGGCGGGGCTCAACTTCTTCGGATGRCGTTTATGCTGGCACGGGGGCGGTCTGCCGGCAAATGGTCCCATTCCGTGGAAGGAGTTTTTTTGAGAGCATCCAAAATGGTGTTAAAACAAACTTGAACACATGCGTAAAGAGTTCCTTGTACGAAAATCTCAATCGATTTGTGATCTGACTCAAGACAGGCCATTCTTTTTCGTGGATCAAATTGCAGAAGTTGACGTGGTACTCCTGCTGAACATGTTTTGCCGTCTGAGCAGGCGCTATGTATTTTTGGGATATCTGCATTTGCTATTCAAAGTTAGATTATGATTCAGGCAGTATGATTTCCACTAGAAGTAGTATTCTTGGTACACTTACAAACCTGGCTCCACCAAAAACAGTGGTTTTTTCTCATTTGAAGTGCTTCCTCCAAAAGTCATGGTTTGCTGAAGATTGGCTCTTCAGAGAATCAACAGACCATTACTGTTAGATAGCCAAGGACATTGTGCCTATACATGCCAATTTTTAGAATTGAGTTTTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>344 303 197 137 19</canonical_bands>
                <polymorphic_bands>541 303 137 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAATTGAATCATAGTTGTTTGT</pcr_primer_p1>
		<pcr_primer_p2>TTCAGCAAACCATGACTTTT</pcr_primer_p2>
		<pcr_amplicon_size>465</pcr_amplicon_size>
		<canonical_amplicon>CAAAATTGAATCATAGTTGTTTGTTTCTAATGGCGGGGCTCAACTTCTTCGGATGACGTTTATGCTGGCACGGGGGCGGTCTGCCGGCAAATGGTCCCATTCCGTGGAAGGAGTTTTTTTGAGAGCATCCAAAATGGTGTTAAAACAAACTTGAACACATGCGTAAAGAGTTCCTTGTACGAAAATCTCAATCGATTTGTGATCTGACTCAAGACAGGCCATTCTTTTTCGTGGATCAAATTGCAGAAGTTGACGTGGTACTCCTGCTGAACATGTTTTGCCGTCTGAGCAGGCGCTATGTATTTTTGGGATATCTGCATTTGCTATTCAAAGTTAGATTATGATTCAGGCAGTATGATTTCCACTAGAAGTAGTATTCTTGGTACACTTACAAACCTGGCTCCACCAAAAACAGTGGTTTTTTCTCATTTGAAGTGCTTCCTCCAAAAGTCATGGTTTGCTGAA</canonical_amplicon>
		<polymorphic_amplicon>CAAAATTGAATCATAGTTGTTTGTTTCTAATGGCGGGGCTCAACTTCTTCGGATGRCGTTTATGCTGGCACGGGGGCGGTCTGCCGGCAAATGGTCCCATTCCGTGGAAGGAGTTTTTTTGAGAGCATCCAAAATGGTGTTAAAACAAACTTGAACACATGCGTAAAGAGTTCCTTGTACGAAAATCTCAATCGATTTGTGATCTGACTCAAGACAGGCCATTCTTTTTCGTGGATCAAATTGCAGAAGTTGACGTGGTACTCCTGCTGAACATGTTTTGCCGTCTGAGCAGGCGCTATGTATTTTTGGGATATCTGCATTTGCTATTCAAAGTTAGATTATGATTCAGGCAGTATGATTTCCACTAGAAGTAGTATTCTTGGTACACTTACAAACCTGGCTCCACCAAAAACAGTGGTTTTTTCTCATTTGAAGTGCTTCCTCCAAAAGTCATGGTTTGCTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27202</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>41425</contig_pos>
        <strand>+</strand>
        <context>GCTGAAAACC[A/G]GAAGTTTTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCCACCGATGGACTTCAACGCCTCGCTCGTCTACTTGAAGCTGAAAACC</left_flank>
        <right_flank>GAAGTTTTCGGTGATTAGCTACAGGTACGTAACATGCATGGTATTCAGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAAGAATTCCTTTGTACTTGGTCGGAATTTTGTCTTTGAGAAGTTAAACATTTTCTGCAGGCCGTGTTGCGAGGTTTACTTCCAAAAAGCTTGTCAAAGTGCGGTTTCTATGTTAGCACATATTGACCTGATGCTCTGTCTGCTTCTTTTACGTGAAATTATTTTATATTTTCACATGAATCGGATTTTTTGGCCGATTTAATTGTGTAATTACGCTGAAGAAGTGCACAACGACGCTCCGATATCCCGCATCGCGTTTACCGTAAATCTACACACAGATTTTCGATGAATTTGCAGATATTTTTGCCTATTTTGTTCGATTTTGTTTGATTTTATACGATTTCATCGGTTATTTTTCTACTTTTTTTACTTGCAAACTCATTTTCATCGTTTCTAGCCGTTTTCCTCAAGTTTCTATCGATAAATTCCACAAAAAAAGTTATTTTAGTCCCACCGATGGACTTCAACGCCTCGCTCGTCTACTTGAAGCTGAAAACCGGAAGTTTTCGGTGATTAGCTACAGGTACGTAACATGCATGGTATTCAGTATGCATGGTATTCCTCTGACTAAAACAAAATTTTTAGGTGAATAACAACAAGCTAATCAAAAACGACCGAGAAGCTGACACTTCCGAATTTCTGCAAATAGCTGCACGTGCTCACGGCACCAATTCGGAGGTTGAAAATCTTGCGTTGGGCGTTGCTTGCCTCACAGAAATGGTAATAACATTACGTTTTGCACTGTAAACCGACAACATAATATTTCAGTTGAACAAAACTTTACGTCGTCTAAAAATAACGGAATCGGATGATTTGAGATCCAATGAACCGTTCGTTAACCCCCAATGCGGGTTCGATCTAGAAGAAGCCACGAATATCGGAGATGTCGTCGTTTTGCCAAGTGACAGGACACTAAAAATGTCAAGCTGCATTTCAGTTCTCACCGCATCTAGTTGGACGTCTTCAAATTATAAAACGGACGCGAAAAGTTTAGTCCGG</canonical>
            <polymorphic>ACAAGAATTCCTTTGTACTTGGTCGGAATTTTGTCTTTGAGAAGTTAAACATTTTCTGCAGGCCGTGTTGCGAGGTTTACTTCCAAAAAGCTTGTCAAAGTGCGGTTTCTATGTTAGCACATATTGACCTGATGCTCTGTCTGCTTCTTTTACGTGAAATTATTTTATATTTTCACATGAATCGGATTTTTTGGCCGATTTAATTGTGTAATTACGCTGAAGAAGTGCACAACGACGCTCCGATATCCCGCATCGCGTTTACCGTAAATCTACACACAGATTTTCGATGAATTTGCAGATATTTTTGCCTATTTTGTTCGATTTTGTTTGATTTTATACGATTTCATCGGTTATTTTTCTACTTTTTTTACTTGCAAACTCATTTTCATCGTTTCTAGCCGTTTTCCTCAAGTTTCTATCGATAAATTCCACAAAAAAAGTTATTTTAGTCCCACCGATGGACTTCAACGCCTCGCTCGTCTACTTGAAGCTGAAAACCRGAAGTTTTCGGTGATTAGCTACAGGTACGTAACATGCATGGTATTCAGTATGCATGGTATTCCTCTGACTAAAACAAAATTTTTAGGTGAATAACAACAAGCTAATCAAAAACGACCGAGAAGCTGACACTTCCGAATTTCTGCAAATAGCTGCACGTGCTCACGGCACCAATTCGGAGGTTGAAAATCTTGCGTTGGGCGTTGCTTGCCTCACAGAAATGGTAATAACATTACGTTTTGCACTGTAAACCGACAACATAATATTTCAGTTGAACAAAACTTTACGTCGTCTAAAAATAACGGAATCGGATGATTTGAGATCCAATGAACCGTTCGTTAACCCCCAATGCGGGTTCGATCTAGAAGAAGCCACGAATATCGGAGATGTCGTCGTTTTGCCAAGTGACAGGACACTAAAAATGTCAAGCTGCATTTCAGTTCTCACCGCATCTAGTTGGACGTCTTCAAATTATAAAACGGACGCGAAAAGTTTAGTCCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 498 3</canonical_bands>
                <polymorphic_bands>997 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTCGATTTTGTTTGATTTTAT</pcr_primer_p1>
		<pcr_primer_p2>GAATACCATGCATACTGAATACC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTTCGATTTTGTTTGATTTTATACGATTTCATCGGTTATTTTTCTACTTTTTTTACTTGCAAACTCATTTTCATCGTTTCTAGCCGTTTTCCTCAAGTTTCTATCGATAAATTCCACAAAAAAAGTTATTTTAGTCCCACCGATGGACTTCAACGCCTCGCTCGTCTACTTGAAGCTGAAAACCGGAAGTTTTCGGTGATTAGCTACAGGTACGTAACATGCATGGTATTCAGTATGCATGGTATTC</canonical_amplicon>
		<polymorphic_amplicon>TGTTCGATTTTGTTTGATTTTATACGATTTCATCGGTTATTTTTCTACTTTTTTTACTTGCAAACTCATTTTCATCGTTTCTAGCCGTTTTCCTCAAGTTTCTATCGATAAATTCCACAAAAAAAGTTATTTTAGTCCCACCGATGGACTTCAACGCCTCGCTCGTCTACTTGAAGCTGAAAACCRGAAGTTTTCGGTGATTAGCTACAGGTACGTAACATGCATGGTATTCAGTATGCATGGTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27203</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>54182</contig_pos>
        <strand></strand>
        <context>caaaaaattc[C/T]gaaaatcaga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTATCTGAAATTCCCAATTTTTGAAAATCGGAATAATCAAAAAATTC</left_flank>
        <right_flank>GAAAATCAGAATAATTCAAATTTCGAACAAAAATACTCCTGAAATTCCGG</right_flank>
        <qual_score>35</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCTTCGAATCATTTTCGAGAGTTATAGAGTTGGGATCTGGGTGTGGAGTGAGTGGAATCGCAATTGCGAAGATGAAGAATTGTGGAGTGGTGCTGACGGATTACGATGAGAATGTGTTGAATTTATTGAAAGAGAATGCGGAGAAAAATGGATTGATTGGAGATGGAGAAGGTTTGGTTTGGTTTTGTGTTGTTTTCTGTGTCTGAAGAGGACATTTTGACTTTACTGAATTTCAACAATCCGCCGAATCGGGGATGGTCGGAACGGAATTTCGAAAATCAATATTCTGAAATCTCCGAAAATTCGAGAATCGTGAAACATTTCATAATTTTGAAAATATAAATATTCTGAAATTTCAGAAAAAAGAGAAAAAATTCGAAAATCGGATTTGACATTTTGGATTTTCGAAATTTCGAAACTTGAAAAATTCCTAAATTTTAAAAATCTAAATTATCTGAAATTCCCAATTTTTGAAAATCGGAATAATCAAAAAATTCCGAAAATCAGAATAATTCAAATTTCGAACAAAAATACTCCTGAAATTCCGGAATTTTCAAAATCGAAGTTATCCGAAGACATCCCTGTTGGGATTTTTGGTTTTTCTAATTTTCAAAAATTGCTGATTCTGTCTGTCTTTATCCCGACCTCAACCCTTCTTTTTTCCAGAAAACTCAAAAGTTCGCTGCCTGGATTGGTGTAGTTTCGATTTAACGGAGTGGAAAGAGCCAGCGGATTTGGTTATCGCTGCTGGTGAGGTTTCTTTTTTCTAAATCTAATTTTTTTACTCTTCATAAAAACAAAAATTATTTCTCCTCTCGGCGAGAAGCTCTCTTCATTATCCTCCTTCTCCCTCTTGTCTCCCCTCTATTCTCTCATTTTCCAGACGTCGTCTACGACTCCGCCCTTCTCTCATCTCTCTGCAACGTGCTCCGTCTTCTTCTTCGTCACTCAAAAGCGGCCATCGTGGCATGCACACTGCGAAACGAGGGAAGCATTTC</canonical>
            <polymorphic>TTCCTTCGAATCATTTTCGAGAGTTATAGAGTTGGGATCTGGGTGTGGAGTGAGTGGAATCGCAATTGCGAAGATGAAGAATTGTGGAGTGGTGCTGACGGATTACGATGAGAATGTGTTGAATTTATTGAAAGAGAATGCGGAGAAAAATGGATTGATTGGAGATGGAGAAGGTTTGGTTTGGTTTTGTGTTGTTTTCTGTGTCTGAAGAGGACATTTTGACTTTACTGAATTTCAACAATCCGCCGAATCGGGGATGGTCGGAACGGAATTTCGAAAATCAATATTCTGAAATCTCCGAAAATTCGAGAATCGTGAAACATTTCATAATTTTGAAAATATAAATATTCTGAAATTTCAGAAAAAAGAGAAAAAATTCGAAAATCGGATTTGACATTTTGGATTTTCGAAATTTCGAAACTTGAAAAATTCCTAAATTTTAAAAATCTAAATTATCTGAAATTCCCAATTTTTGAAAATCGGAATAATCAAAAAATTCYGAAAATCAGAATAATTCAAATTTCGAACAAAAATACTCCTGAAATTCCGGAATTTTCAAAATCGAAGTTATCCGAAGACATCCCTGTTGGGATTTTTGGTTTTTCTAATTTTCAAAAATTGCTGATTCTGTCTGTCTTTATCCCGACCTCAACCCTTCTTTTTTCCAGAAAACTCAAAAGTTCGCTGCCTGGATTGGTGTAGTTTCGATTTAACGGAGTGGAAAGAGCCAGCGGATTTGGTTATCGCTGCTGGTGAGGTTTCTTTTTTCTAAATCTAATTTTTTTACTCTTCATAAAAACAAAAATTATTTCTCCTCTCGGCGAGAAGCTCTCTTCATTATCCTCCTTCTCCCTCTTGTCTCCCCTCTATTCTCTCATTTTCCAGACGTCGTCTACGACTCCGCCCTTCTCTCATCTCTCTGCAACGTGCTCCGTCTTCTTCTTCGTCACTCAAAAGCGGCCATCGTGGCATGCACACTGCGAAACGAGGGAAGCATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTTGACATTTTGGATTTT</pcr_primer_p1>
		<pcr_primer_p2>ACAGACAGAATCAGCAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGATTTGACATTTTGGATTTTCGAAATTTCGAAACTTGAAAAATTCCTAAATTTTAAAAATCTAAATTATCTGAAATTCCCAATTTTTGAAAATCGGAATAATCAAAAAATTCCGAAAATCAGAATAATTCAAATTTCGAACAAAAATACTCCTGAAATTCCGGAATTTTCAAAATCGAAGTTATCCGAAGACATCCCTGTTGGGATTTTTGGTTTTTCTAATTTTCAAAAATTGCTGATTCTGTCTGT</canonical_amplicon>
		<polymorphic_amplicon>GGATTTGACATTTTGGATTTTCGAAATTTCGAAACTTGAAAAATTCCTAAATTTTAAAAATCTAAATTATCTGAAATTCCCAATTTTTGAAAATCGGAATAATCAAAAAATTCYGAAAATCAGAATAATTCAAATTTCGAACAAAAATACTCCTGAAATTCCGGAATTTTCAAAATCGAAGTTATCCGAAGACATCCCTGTTGGGATTTTTGGTTTTTCTAATTTTCAAAAATTGCTGATTCTGTCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27204</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>54207</contig_pos>
        <strand></strand>
        <context>ttcaaatttc[G/C]aacaaaaata</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GAAAATCGGAATAATCAAAAAATTCCGAAAATCAGAATAATTCAAATTTC</left_flank>
        <right_flank>AACAAAAATACTCCTGAAATTCCGGAATTTTCAAAATCGAAGTTATCCGA</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGAGTTGGGATCTGGGTGTGGAGTGAGTGGAATCGCAATTGCGAAGATGAAGAATTGTGGAGTGGTGCTGACGGATTACGATGAGAATGTGTTGAATTTATTGAAAGAGAATGCGGAGAAAAATGGATTGATTGGAGATGGAGAAGGTTTGGTTTGGTTTTGTGTTGTTTTCTGTGTCTGAAGAGGACATTTTGACTTTACTGAATTTCAACAATCCGCCGAATCGGGGATGGTCGGAACGGAATTTCGAAAATCAATATTCTGAAATCTCCGAAAATTCGAGAATCGTGAAACATTTCATAATTTTGAAAATATAAATATTCTGAAATTTCAGAAAAAAGAGAAAAAATTCGAAAATCGGATTTGACATTTTGGATTTTCGAAATTTCGAAACTTGAAAAATTCCTAAATTTTAAAAATCTAAATTATCTGAAATTCCCAATTTTTGAAAATCGGAATAATCAAAAAATTCCGAAAATCAGAATAATTCAAATTTCGAACAAAAATACTCCTGAAATTCCGGAATTTTCAAAATCGAAGTTATCCGAAGACATCCCTGTTGGGATTTTTGGTTTTTCTAATTTTCAAAAATTGCTGATTCTGTCTGTCTTTATCCCGACCTCAACCCTTCTTTTTTCCAGAAAACTCAAAAGTTCGCTGCCTGGATTGGTGTAGTTTCGATTTAACGGAGTGGAAAGAGCCAGCGGATTTGGTTATCGCTGCTGGTGAGGTTTCTTTTTTCTAAATCTAATTTTTTTACTCTTCATAAAAACAAAAATTATTTCTCCTCTCGGCGAGAAGCTCTCTTCATTATCCTCCTTCTCCCTCTTGTCTCCCCTCTATTCTCTCATTTTCCAGACGTCGTCTACGACTCCGCCCTTCTCTCATCTCTCTGCAACGTGCTCCGTCTTCTTCTTCGTCACTCAAAAGCGGCCATCGTGGCATGCACACTGCGAAACGAGGGAAGCATTTCTTGTTTCGAGCATCATTTGAGTCGG</canonical>
            <polymorphic>ATAGAGTTGGGATCTGGGTGTGGAGTGAGTGGAATCGCAATTGCGAAGATGAAGAATTGTGGAGTGGTGCTGACGGATTACGATGAGAATGTGTTGAATTTATTGAAAGAGAATGCGGAGAAAAATGGATTGATTGGAGATGGAGAAGGTTTGGTTTGGTTTTGTGTTGTTTTCTGTGTCTGAAGAGGACATTTTGACTTTACTGAATTTCAACAATCCGCCGAATCGGGGATGGTCGGAACGGAATTTCGAAAATCAATATTCTGAAATCTCCGAAAATTCGAGAATCGTGAAACATTTCATAATTTTGAAAATATAAATATTCTGAAATTTCAGAAAAAAGAGAAAAAATTCGAAAATCGGATTTGACATTTTGGATTTTCGAAATTTCGAAACTTGAAAAATTCCTAAATTTTAAAAATCTAAATTATCTGAAATTCCCAATTTTTGAAAATCGGAATAATCAAAAAATTCCGAAAATCAGAATAATTCAAATTTCSAACAAAAATACTCCTGAAATTCCGGAATTTTCAAAATCGAAGTTATCCGAAGACATCCCTGTTGGGATTTTTGGTTTTTCTAATTTTCAAAAATTGCTGATTCTGTCTGTCTTTATCCCGACCTCAACCCTTCTTTTTTCCAGAAAACTCAAAAGTTCGCTGCCTGGATTGGTGTAGTTTCGATTTAACGGAGTGGAAAGAGCCAGCGGATTTGGTTATCGCTGCTGGTGAGGTTTCTTTTTTCTAAATCTAATTTTTTTACTCTTCATAAAAACAAAAATTATTTCTCCTCTCGGCGAGAAGCTCTCTTCATTATCCTCCTTCTCCCTCTTGTCTCCCCTCTATTCTCTCATTTTCCAGACGTCGTCTACGACTCCGCCCTTCTCTCATCTCTCTGCAACGTGCTCCGTCTTCTTCTTCGTCACTCAAAAGCGGCCATCGTGGCATGCACACTGCGAAACGAGGGAAGCATTTCTTGTTTCGAGCATCATTTGAGTCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 249 108 104 29 8</canonical_bands>
                <polymorphic_bands>610 249 104 29 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>301 250 143 108 72 39 32 29 18 8</canonical_bands>
                <polymorphic_bands>301 250 147 143 72 32 29 18 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTTGACATTTTGGATTTT</pcr_primer_p1>
		<pcr_primer_p2>ACAGACAGAATCAGCAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGATTTGACATTTTGGATTTTCGAAATTTCGAAACTTGAAAAATTCCTAAATTTTAAAAATCTAAATTATCTGAAATTCCCAATTTTTGAAAATCGGAATAATCAAAAAATTCCGAAAATCAGAATAATTCAAATTTCGAACAAAAATACTCCTGAAATTCCGGAATTTTCAAAATCGAAGTTATCCGAAGACATCCCTGTTGGGATTTTTGGTTTTTCTAATTTTCAAAAATTGCTGATTCTGTCTGT</canonical_amplicon>
		<polymorphic_amplicon>GGATTTGACATTTTGGATTTTCGAAATTTCGAAACTTGAAAAATTCCTAAATTTTAAAAATCTAAATTATCTGAAATTCCCAATTTTTGAAAATCGGAATAATCAAAAAATTCCGAAAATCAGAATAATTCAAATTTCSAACAAAAATACTCCTGAAATTCCGGAATTTTCAAAATCGAAGTTATCCGAAGACATCCCTGTTGGGATTTTTGGTTTTTCTAATTTTCAAAAATTGCTGATTCTGTCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27205</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>106777</contig_pos>
        <strand>+</strand>
        <context>TAAAGAAATG[C/T]AGAAAACATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCCAACAAATTCCCTTTAAACTCTGGAACGAAATTGAATTAAAGAAATG</left_flank>
        <right_flank>AGAAAACATCAAAAAGTTAGCTAAAAATCAGTTCAAAGGAAGATGACTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCAAGCTCGGTGAGGCTTGTGGGCCGGGTCCTGGCCTGTTGAGTTTGGTTTTATTATGCTCAGTTTTATTATGTTACAGTTTTATTCTACTCACTATCAGTTTTGTTAGCGAGTACCGCCTGCTACTCGACACATTTGGCGGTGGTACAGATTTCAAAAACCCATCAGAAAAAATGAAAAAATCCCGGATAAATATTGCCGAAAATATACCAAAATTTAGTTAAAATTTCTTATTTGTAGATTTTCCCAACAAATTCCCTTTAAACTCTGGAACGAAATTGAATTAAAGAAATGCAGAAAACATCAAAAAGTTAGCTAAAAATCAGTTCAAAGGAAGATGACTTTCTTTGGAGGCTACAGATTACGGTGTCAATCGGGAAGATTCTACATTCAGATCTGAAATGAGACAACACTGCTTAATCAAAATTATAGAAAATATTATTCAAATCACAACAATTTATTCACATAACAAACCAATAAAAGATTATCAAAATCAGAAATGTGGAGCACTTAATCCAGGATAATCTCTGAAAAAAGTTTTGTCCGTTAAAAAAACGAAGAAGAATCTCGAATAATCTTGTTAATCCAGCTGACTGATTTCAAGACATGAGCTCTACTTTTCCCCATTCTGGTATGAAGAGCTCTTCAGAAACTGATTTCGAGAAAAATATGTTTTAGACGATTTTTGAGCTCTCGCCTTCCTATCGAAAACCCCATTTGAAAATAATTTGAAAGGTGCTCGTTTTGTTTATTGAATGGTTAATTGGTTTCTTAATTGTCTTCCTGAACCTTTCA</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCAAGCTCGGTGAGGCTTGTGGGCCGGGTCCTGGCCTGTTGAGTTTGGTTTTATTATGCTCAGTTTTATTATGTTACAGTTTTATTCTACTCACTATCAGTTTTGTTAGCGAGTACCGCCTGCTACTCGACACATTTGGCGGTGGTACAGATTTCAAAAACCCATCAGAAAAAATGAAAAAATCCCGGATAAATATTGCCGAAAATATACCAAAATTTAGTTAAAATTTCTTATTTGTAGATTTTCCCAACAAATTCCCTTTAAACTCTGGAACGAAATTGAATTAAAGAAATGYAGAAAACATCAAAAAGTTAGCTAAAAATCAGTTCAAAGGAAGATGACTTTCTTTGGAGGCTACAGATTACGGTGTCAATCGGGAAGATTCTACATTCAGATCTGAAATGAGACAACACTGCTTAATCAAAATTATAGAAAATATTATTCAAATCACAACAATTTATTCACATAACAAACCAATAAAAGATTATCAAAATCAGAAATGTGGAGCACTTAATCCAGGATAATCTCTGAAAAAAGTTTTGTCCGTTAAAAAAACGAAGAAGAATCTCGAATAATCTTGTTAATCCAGCTGACTGATTTCAAGACATGAGCTCTACTTTTCCCCATTCTGGTATGAAGAGCTCTTCAGAAACTGATTTCGAGAAAAATATGTTTTAGACGATTTTTGAGCTCTCGCCTTCCTATCGAAAACCCCATTTGAAAATAATTTGAAAGGTGCTCGTTTTGTTTATTGAATGGTTAATTGGTTTCTTAATTGTCTTCCTGAACCTTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTATTTGTAGATTTTCCCAACA</pcr_primer_p1>
		<pcr_primer_p2>TGGTTTGTTATGTGAATAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTTATTTGTAGATTTTCCCAACAAATTCCCTTTAAACTCTGGAACGAAATTGAATTAAAGAAATGCAGAAAACATCAAAAAGTTAGCTAAAAATCAGTTCAAAGGAAGATGACTTTCTTTGGAGGCTACAGATTACGGTGTCAATCGGGAAGATTCTACATTCAGATCTGAAATGAGACAACACTGCTTAATCAAAATTATAGAAAATATTATTCAAATCACAACAATTTATTCACATAACAAACCA</canonical_amplicon>
		<polymorphic_amplicon>CTTATTTGTAGATTTTCCCAACAAATTCCCTTTAAACTCTGGAACGAAATTGAATTAAAGAAATGYAGAAAACATCAAAAAGTTAGCTAAAAATCAGTTCAAAGGAAGATGACTTTCTTTGGAGGCTACAGATTACGGTGTCAATCGGGAAGATTCTACATTCAGATCTGAAATGAGACAACACTGCTTAATCAAAATTATAGAAAATATTATTCAAATCACAACAATTTATTCACATAACAAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27206</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>109021</contig_pos>
        <strand></strand>
        <context>ttgatatact[A/G]tattgaaatc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTAATATTATCAAAAATATTTTATCAGCTGATCACTTTTTGATATACT</left_flank>
        <right_flank>TATTGAAATCTAGATAATTGAAATACAGTTCCATTTGGGTTTCAATTTTA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAATCACATTTTCTCCAGAAAGATGAACTTCCAAGCACCAAGACGACATCAGTACTCAAAGGACAACAGTGAAATTGATGAGGAGCGGAGGTAAAACGAAGAATATGACAGCAAAAGATATCAAAGTGTAATACTAAATTCTCTTGGGAGCGGATGATCCATTCCACGTACTTTAGGTTGTGTCCTCCTATTCTCCTATTCTTCTCTTTCTCTTTCCGGAGAACATAATTTGGTTAGATGTCGTCTCGAAGAAATAGTATTCGAGTTTGAATGACACAGAGTAATGCACATCTTGGACAGATTGCTTTCCACCCAAATCCTTTTCTCCACCTTTTTTGTTTTTTTTGTTTCGAGTTTTTCGCATTTCTTTCCTTGTAGAAAGTTCTGTGGACAATTTTTAAGTTTTCGTAAGACATCGAAATTCTATCAAGGGATAAAATGTTTTTTTTAATATTATCAAAAATATTTTATCAGCTGATCACTTTTTGATATACTATATTGAAATCTAGATAATTGAAATACAGTTCCATTTGGGTTTCAATTTTAACTTTCACAACAAAGTTACCATAAGAAAAAGTGTGTCCCATCCGAGAAGGAGTAATGTTGTTTACAAAATTTTATGCTAAACTTGACCTANTTTTCTCAAAAATTTTTAATAATCAGTTTTTCCCAAACCATTAAAGCATTGCTCCTCTTGCAAAATATGCCATATTTGGGTCAAAGTGTTGAAATTGCTACCTTGAACTTTGAAATGAATTATCTCGGTTCCTATAAGAGGTATCAAAATCATTGAAACTGATATATTGTTTATCATAACATCACCTATATTTCAGTTGACAGTTTTTGACATCTTTCAAAGGAACCGAGATAATTGAGCTCAAAGTGCAATTAAGTGGCGACGTTCCATGCCTAATAACTTTCAACTTTGAGCCAATTCATCTCAGTTCCTGTAAAAGATATCAAAAAGTAGCTAAGAGTTAAAATATTGTCGAAATT</canonical>
            <polymorphic>AAAAAAATCACATTTTCTCCAGAAAGATGAACTTCCAAGCACCAAGACGACATCAGTACTCAAAGGACAACAGTGAAATTGATGAGGAGCGGAGGTAAAACGAAGAATATGACAGCAAAAGATATCAAAGTGTAATACTAAATTCTCTTGGGAGCGGATGATCCATTCCACGTACTTTAGGTTGTGTCCTCCTATTCTCCTATTCTTCTCTTTCTCTTTCCGGAGAACATAATTTGGTTAGATGTCGTCTCGAAGAAATAGTATTCGAGTTTGAATGACACAGAGTAATGCACATCTTGGACAGATTGCTTTCCACCCAAATCCTTTTCTCCACCTTTTTTGTTTTTTTTGTTTCGAGTTTTTCGCATTTCTTTCCTTGTAGAAAGTTCTGTGGACAATTTTTAAGTTTTCGTAAGACATCGAAATTCTATCAAGGGATAAAATGTTTTTTTTAATATTATCAAAAATATTTTATCAGCTGATCACTTTTTGATATACTRTATTGAAATCTAGATAATTGAAATACAGTTCCATTTGGGTTTCAATTTTAACTTTCACAACAAAGTTACCATAAGAAAAAGTGTGTCCCATCCGAGAAGGAGTAATGTTGTTTACAAAATTTTATGCTAAACTTGACCTANTTTTCTCAAAAATTTTTAATAATCAGTTTTTCCCAAACCATTAAAGCATTGCTCCTCTTGCAAAATATGCCATATTTGGGTCAAAGTGTTGAAATTGCTACCTTGAACTTTGAAATGAATTATCTCGGTTCCTATAAGAGGTATCAAAATCATTGAAACTGATATATTGTTTATCATAACATCACCTATATTTCAGTTGACAGTTTTTGACATCTTTCAAAGGAACCGAGATAATTGAGCTCAAAGTGCAATTAAGTGGCGACGTTCCATGCCTAATAACTTTCAACTTTGAGCCAATTCATCTCAGTTCCTGTAAAAGATATCAAAAAGTAGCTAAGAGTTAAAATATTGTCGAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTCCTTGTAGAAAGTTCTGTG</pcr_primer_p1>
		<pcr_primer_p2>TTGTAAACAACATTACTCCTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTTTCCTTGTAGAAAGTTCTGTGGACAATTTTTAAGTTTTCGTAAGACATCGAAATTCTATCAAGGGATAAAATGTTTTTTTTAATATTATCAAAAATATTTTATCAGCTGATCACTTTTTGATATACTATATTGAAATCTAGATAATTGAAATACAGTTCCATTTGGGTTTCAATTTTAACTTTCACAACAAAGTTACCATAAGAAAAAGTGTGTCCCATCCGAGAAGGAGTAATGTTGTTTACAA</canonical_amplicon>
		<polymorphic_amplicon>CTTTCCTTGTAGAAAGTTCTGTGGACAATTTTTAAGTTTTCGTAAGACATCGAAATTCTATCAAGGGATAAAATGTTTTTTTTAATATTATCAAAAATATTTTATCAGCTGATCACTTTTTGATATACTRTATTGAAATCTAGATAATTGAAATACAGTTCCATTTGGGTTTCAATTTTAACTTTCACAACAAAGTTACCATAAGAAAAAGTGTGTCCCATCCGAGAAGGAGTAATGTTGTTTACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27207</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>109043</contig_pos>
        <strand></strand>
        <context>agataaTTGA[A/T]ATACAGTTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTATCAGCTGATCACTTTTTGATATACTATATTGAAATCTAGATAATTGA</left_flank>
        <right_flank>ATACAGTTCCATTTGGGTTTCAATTTTAACTTTCACAACAAAGTTACCAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGATGAACTTCCAAGCACCAAGACGACATCAGTACTCAAAGGACAACAGTGAAATTGATGAGGAGCGGAGGTAAAACGAAGAATATGACAGCAAAAGATATCAAAGTGTAATACTAAATTCTCTTGGGAGCGGATGATCCATTCCACGTACTTTAGGTTGTGTCCTCCTATTCTCCTATTCTTCTCTTTCTCTTTCCGGAGAACATAATTTGGTTAGATGTCGTCTCGAAGAAATAGTATTCGAGTTTGAATGACACAGAGTAATGCACATCTTGGACAGATTGCTTTCCACCCAAATCCTTTTCTCCACCTTTTTTGTTTTTTTTGTTTCGAGTTTTTCGCATTTCTTTCCTTGTAGAAAGTTCTGTGGACAATTTTTAAGTTTTCGTAAGACATCGAAATTCTATCAAGGGATAAAATGTTTTTTTTAATATTATCAAAAATATTTTATCAGCTGATCACTTTTTGATATACTATATTGAAATCTAGATAATTGAAATACAGTTCCATTTGGGTTTCAATTTTAACTTTCACAACAAAGTTACCATAAGAAAAAGTGTGTCCCATCCGAGAAGGAGTAATGTTGTTTACAAAATTTTATGCTAAACTTGACCTANTTTTCTCAAAAATTTTTAATAATCAGTTTTTCCCAAACCATTAAAGCATTGCTCCTCTTGCAAAATATGCCATATTTGGGTCAAAGTGTTGAAATTGCTACCTTGAACTTTGAAATGAATTATCTCGGTTCCTATAAGAGGTATCAAAATCATTGAAACTGATATATTGTTTATCATAACATCACCTATATTTCAGTTGACAGTTTTTGACATCTTTCAAAGGAACCGAGATAATTGAGCTCAAAGTGCAATTAAGTGGCGACGTTCCATGCCTAATAACTTTCAACTTTGAGCCAATTCATCTCAGTTCCTGTAAAAGATATCAAAAAGTAGCTAAGAGTTAAAATATTGTCGAAATTATGATAAAAATTTTATCAATTG</canonical>
            <polymorphic>AAAGATGAACTTCCAAGCACCAAGACGACATCAGTACTCAAAGGACAACAGTGAAATTGATGAGGAGCGGAGGTAAAACGAAGAATATGACAGCAAAAGATATCAAAGTGTAATACTAAATTCTCTTGGGAGCGGATGATCCATTCCACGTACTTTAGGTTGTGTCCTCCTATTCTCCTATTCTTCTCTTTCTCTTTCCGGAGAACATAATTTGGTTAGATGTCGTCTCGAAGAAATAGTATTCGAGTTTGAATGACACAGAGTAATGCACATCTTGGACAGATTGCTTTCCACCCAAATCCTTTTCTCCACCTTTTTTGTTTTTTTTGTTTCGAGTTTTTCGCATTTCTTTCCTTGTAGAAAGTTCTGTGGACAATTTTTAAGTTTTCGTAAGACATCGAAATTCTATCAAGGGATAAAATGTTTTTTTTAATATTATCAAAAATATTTTATCAGCTGATCACTTTTTGATATACTATATTGAAATCTAGATAATTGAWATACAGTTCCATTTGGGTTTCAATTTTAACTTTCACAACAAAGTTACCATAAGAAAAAGTGTGTCCCATCCGAGAAGGAGTAATGTTGTTTACAAAATTTTATGCTAAACTTGACCTANTTTTCTCAAAAATTTTTAATAATCAGTTTTTCCCAAACCATTAAAGCATTGCTCCTCTTGCAAAATATGCCATATTTGGGTCAAAGTGTTGAAATTGCTACCTTGAACTTTGAAATGAATTATCTCGGTTCCTATAAGAGGTATCAAAATCATTGAAACTGATATATTGTTTATCATAACATCACCTATATTTCAGTTGACAGTTTTTGACATCTTTCAAAGGAACCGAGATAATTGAGCTCAAAGTGCAATTAAGTGGCGACGTTCCATGCCTAATAACTTTCAACTTTGAGCCAATTCATCTCAGTTCCTGTAAAAGATATCAAAAAGTAGCTAAGAGTTAAAATATTGTCGAAATTATGATAAAAATTTTATCAATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTCCTTGTAGAAAGTTCTGTG</pcr_primer_p1>
		<pcr_primer_p2>TTGTAAACAACATTACTCCTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTTTCCTTGTAGAAAGTTCTGTGGACAATTTTTAAGTTTTCGTAAGACATCGAAATTCTATCAAGGGATAAAATGTTTTTTTTAATATTATCAAAAATATTTTATCAGCTGATCACTTTTTGATATACTATATTGAAATCTAGATAATTGAAATACAGTTCCATTTGGGTTTCAATTTTAACTTTCACAACAAAGTTACCATAAGAAAAAGTGTGTCCCATCCGAGAAGGAGTAATGTTGTTTACAA</canonical_amplicon>
		<polymorphic_amplicon>CTTTCCTTGTAGAAAGTTCTGTGGACAATTTTTAAGTTTTCGTAAGACATCGAAATTCTATCAAGGGATAAAATGTTTTTTTTAATATTATCAAAAATATTTTATCAGCTGATCACTTTTTGATATACTATATTGAAATCTAGATAATTGAWATACAGTTCCATTTGGGTTTCAATTTTAACTTTCACAACAAAGTTACCATAAGAAAAAGTGTGTCCCATCCGAGAAGGAGTAATGTTGTTTACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27208</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>120654</contig_pos>
        <strand>+</strand>
        <context>TTTTCCTGTG[C/T]TCATTGGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTATATGACATCGTTCAGCATCAAGATTCCTTCTTGAATTTTTCCTGTG</left_flank>
        <right_flank>TCATTGGATTTTTTACAATAACATCCAAATCAATGAAAAATAACCTGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATTTTCTATCCATTCAAACACCCAGAAACACCTCTCAAATAACATTTTTTCGTGGTTTTTCCCTCAACAGAGGATACGAGTTTCCGTTTTTTTTCCGTGTTGTTGTCACTCAAAAATAGTGTTTATTGATGAACAAGTTAGGTTTCTGAGAAACTTCTAGTTACTTTCTTTTAATTTTTTTAAATTTATCTTCTTTCCTGTTCCTAGACGAACATAATTTCTAACTCATTTGTTTAATTTGTAACACATTGATTTTATAAGTGACTGATAGTCCTGCGAGCGTTTTAGCTCATTTGTCGTAAATGCCACAAAGTGATCTTCGTCTAAACTATTTATCATAATATCGGAAACATTTTATCAGTTGACACATTCTTGATATCTCTCATAGATGACGAGATAATGGAGCTCAGTCTTTACTGTGTGGGGCCCTTCTAATACATTTTTCACGGTATATGACATCGTTCAGCATCAAGATTCCTTCTTGAATTTTTCCTGTGTTCATTGGATTTTTTACAATAACATCCAAATCAATGAAAAATAACCTGAAATTATCTCCCATGGAGTATACAGCTGTACAGATTGTTATTCAAAATCAGTCTAGAAAATTCACAGATTTCCGTATACGAGTTATGTTGTTGTGATATTAATGAGAATCTATTGTTTTGGCAGTATACACTTGTCTATCTATAGTTTTTCGTTTGATCATATATTCTTCAGGGAGGTTTTTAAACCAGGTCCGGCCTGTTATAACTGTTAAATCTTTTGAACCTAATTCCGTAGTATTTTTCTGGCACAAAAAACCAGAGCATGTGGCTGTGTCCTGAAGGTCCCACAACGACAATTACCGTAACCTAGAGATATTTCATTTTCTGGATTTACCATCTAGATTTTTGTCCGTTTTCAGTCATTTTTTTTTACTAAAAACATGGAAACGTAGCGAAACACTTAATTTTGACGGAAACCCAGCGAAAAACGCTGAAAAACGAGATAATGCATCC</canonical>
            <polymorphic>CTATTTTCTATCCATTCAAACACCCAGAAACACCTCTCAAATAACATTTTTTCGTGGTTTTTCCCTCAACAGAGGATACGAGTTTCCGTTTTTTTTCCGTGTTGTTGTCACTCAAAAATAGTGTTTATTGATGAACAAGTTAGGTTTCTGAGAAACTTCTAGTTACTTTCTTTTAATTTTTTTAAATTTATCTTCTTTCCTGTTCCTAGACGAACATAATTTCTAACTCATTTGTTTAATTTGTAACACATTGATTTTATAAGTGACTGATAGTCCTGCGAGCGTTTTAGCTCATTTGTCGTAAATGCCACAAAGTGATCTTCGTCTAAACTATTTATCATAATATCGGAAACATTTTATCAGTTGACACATTCTTGATATCTCTCATAGATGACGAGATAATGGAGCTCAGTCTTTACTGTGTGGGGCCCTTCTAATACATTTTTCACGGTATATGACATCGTTCAGCATCAAGATTCCTTCTTGAATTTTTCCTGTGYTCATTGGATTTTTTACAATAACATCCAAATCAATGAAAAATAACCTGAAATTATCTCCCATGGAGTATACAGCTGTACAGATTGTTATTCAAAATCAGTCTAGAAAATTCACAGATTTCCGTATACGAGTTATGTTGTTGTGATATTAATGAGAATCTATTGTTTTGGCAGTATACACTTGTCTATCTATAGTTTTTCGTTTGATCATATATTCTTCAGGGAGGTTTTTAAACCAGGTCCGGCCTGTTATAACTGTTAAATCTTTTGAACCTAATTCCGTAGTATTTTTCTGGCACAAAAAACCAGAGCATGTGGCTGTGTCCTGAAGGTCCCACAACGACAATTACCGTAACCTAGAGATATTTCATTTTCTGGATTTACCATCTAGATTTTTGTCCGTTTTCAGTCATTTTTTTTTACTAAAAACATGGAAACGTAGCGAAACACTTAATTTTGACGGAAACCCAGCGAAAAACGCTGAAAAACGAGATAATGCATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTTTAGCTCATTTGTCGTA</pcr_primer_p1>
		<pcr_primer_p2>GGGAGATAATTTCAGGTTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>CGTTTTAGCTCATTTGTCGTAAATGCCACAAAGTGATCTTCGTCTAAACTATTTATCATAATATCGGAAACATTTTATCAGTTGACACATTCTTGATATCTCTCATAGATGACGAGATAATGGAGCTCAGTCTTTACTGTGTGGGGCCCTTCTAATACATTTTTCACGGTATATGACATCGTTCAGCATCAAGATTCCTTCTTGAATTTTTCCTGTGTTCATTGGATTTTTTACAATAACATCCAAATCAATGAAAAATAACCTGAAATTATCTCCC</canonical_amplicon>
		<polymorphic_amplicon>CGTTTTAGCTCATTTGTCGTAAATGCCACAAAGTGATCTTCGTCTAAACTATTTATCATAATATCGGAAACATTTTATCAGTTGACACATTCTTGATATCTCTCATAGATGACGAGATAATGGAGCTCAGTCTTTACTGTGTGGGGCCCTTCTAATACATTTTTCACGGTATATGACATCGTTCAGCATCAAGATTCCTTCTTGAATTTTTCCTGTGYTCATTGGATTTTTTACAATAACATCCAAATCAATGAAAAATAACCTGAAATTATCTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27209</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>120671</contig_pos>
        <strand>+</strand>
        <context>GATTTTTTAC[A/C]ATAACATCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGCATCAAGATTCCTTCTTGAATTTTTCCTGTGTTCATTGGATTTTTTAC</left_flank>
        <right_flank>ATAACATCCAAATCAATGAAAAATAACCTGAAATTATCTCCCATGGAGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACACCCAGAAACACCTCTCAAATAACATTTTTTCGTGGTTTTTCCCTCAACAGAGGATACGAGTTTCCGTTTTTTTTCCGTGTTGTTGTCACTCAAAAATAGTGTTTATTGATGAACAAGTTAGGTTTCTGAGAAACTTCTAGTTACTTTCTTTTAATTTTTTTAAATTTATCTTCTTTCCTGTTCCTAGACGAACATAATTTCTAACTCATTTGTTTAATTTGTAACACATTGATTTTATAAGTGACTGATAGTCCTGCGAGCGTTTTAGCTCATTTGTCGTAAATGCCACAAAGTGATCTTCGTCTAAACTATTTATCATAATATCGGAAACATTTTATCAGTTGACACATTCTTGATATCTCTCATAGATGACGAGATAATGGAGCTCAGTCTTTACTGTGTGGGGCCCTTCTAATACATTTTTCACGGTATATGACATCGTTCAGCATCAAGATTCCTTCTTGAATTTTTCCTGTGTTCATTGGATTTTTTACAATAACATCCAAATCAATGAAAAATAACCTGAAATTATCTCCCATGGAGTATACAGCTGTACAGATTGTTATTCAAAATCAGTCTAGAAAATTCACAGATTTCCGTATACGAGTTATGTTGTTGTGATATTAATGAGAATCTATTGTTTTGGCAGTATACACTTGTCTATCTATAGTTTTTCGTTTGATCATATATTCTTCAGGGAGGTTTTTAAACCAGGTCCGGCCTGTTATAACTGTTAAATCTTTTGAACCTAATTCCGTAGTATTTTTCTGGCACAAAAAACCAGAGCATGTGGCTGTGTCCTGAAGGTCCCACAACGACAATTACCGTAACCTAGAGATATTTCATTTTCTGGATTTACCATCTAGATTTTTGTCCGTTTTCAGTCATTTTTTTTTACTAAAAACATGGAAACGTAGCGAAACACTTAATTTTGACGGAAACCCAGCGAAAAACGCTGAAAAACGAGATAATGCATCCGGAAAACGGAAACATTA</canonical>
            <polymorphic>AAACACCCAGAAACACCTCTCAAATAACATTTTTTCGTGGTTTTTCCCTCAACAGAGGATACGAGTTTCCGTTTTTTTTCCGTGTTGTTGTCACTCAAAAATAGTGTTTATTGATGAACAAGTTAGGTTTCTGAGAAACTTCTAGTTACTTTCTTTTAATTTTTTTAAATTTATCTTCTTTCCTGTTCCTAGACGAACATAATTTCTAACTCATTTGTTTAATTTGTAACACATTGATTTTATAAGTGACTGATAGTCCTGCGAGCGTTTTAGCTCATTTGTCGTAAATGCCACAAAGTGATCTTCGTCTAAACTATTTATCATAATATCGGAAACATTTTATCAGTTGACACATTCTTGATATCTCTCATAGATGACGAGATAATGGAGCTCAGTCTTTACTGTGTGGGGCCCTTCTAATACATTTTTCACGGTATATGACATCGTTCAGCATCAAGATTCCTTCTTGAATTTTTCCTGTGTTCATTGGATTTTTTACMATAACATCCAAATCAATGAAAAATAACCTGAAATTATCTCCCATGGAGTATACAGCTGTACAGATTGTTATTCAAAATCAGTCTAGAAAATTCACAGATTTCCGTATACGAGTTATGTTGTTGTGATATTAATGAGAATCTATTGTTTTGGCAGTATACACTTGTCTATCTATAGTTTTTCGTTTGATCATATATTCTTCAGGGAGGTTTTTAAACCAGGTCCGGCCTGTTATAACTGTTAAATCTTTTGAACCTAATTCCGTAGTATTTTTCTGGCACAAAAAACCAGAGCATGTGGCTGTGTCCTGAAGGTCCCACAACGACAATTACCGTAACCTAGAGATATTTCATTTTCTGGATTTACCATCTAGATTTTTGTCCGTTTTCAGTCATTTTTTTTTACTAAAAACATGGAAACGTAGCGAAACACTTAATTTTGACGGAAACCCAGCGAAAAACGCTGAAAAACGAGATAATGCATCCGGAAAACGGAAACATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCATCAAGATTCCTTCTT</pcr_primer_p1>
		<pcr_primer_p2>AGAATATATGATCAAACGAAAAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGCATCAAGATTCCTTCTTGAATTTTTCCTGTGTTCATTGGATTTTTTACAATAACATCCAAATCAATGAAAAATAACCTGAAATTATCTCCCATGGAGTATACAGCTGTACAGATTGTTATTCAAAATCAGTCTAGAAAATTCACAGATTTCCGTATACGAGTTATGTTGTTGTGATATTAATGAGAATCTATTGTTTTGGCAGTATACACTTGTCTATCTATAGTTTTTCGTTTGATCATATATTCT</canonical_amplicon>
		<polymorphic_amplicon>CAGCATCAAGATTCCTTCTTGAATTTTTCCTGTGTTCATTGGATTTTTTACMATAACATCCAAATCAATGAAAAATAACCTGAAATTATCTCCCATGGAGTATACAGCTGTACAGATTGTTATTCAAAATCAGTCTAGAAAATTCACAGATTTCCGTATACGAGTTATGTTGTTGTGATATTAATGAGAATCTATTGTTTTGGCAGTATACACTTGTCTATCTATAGTTTTTCGTTTGATCATATATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27210</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>124800</contig_pos>
        <strand>+</strand>
        <context>TGGTCCTTCT[A/T]TATTCCRAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTACAGAAGATTTTTAAGCTTGAATAACACATTTTGAAACTGGTCCTTCT</left_flank>
        <right_flank>TATTCCAAGCCCCTCTTGGAGAGCCCTTCTATTAGGAGGTCCTTCTATTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGGATTCTCTTTCTCTCAACTATACACATATTTTAATTTCCCGTGTGAGGTGTATCTATGTTATCTCCTAAACTCTGTTTCGTTTTTTCTTATTACGACTTCTGTTTTTTTTTCTAATCTTGGCATGTTTATTAGCATAGGGATGTGGGGAATAGTCTAGAAGCCACGTGTACATTCAGGTTTCAGATATCATTTTTACGGTATTCAAGAGATACATCAGTGACCGAAAAAGAAATGACGATGTTAATTGGAAAAGGGTGTCATCTCTGGGAAACTGAACACCGTAAAACCTGTATTACTAGAAGTTAGAAGAGCAGGTATTGTTCCAAGGGGCCTCCGGAGAGTTCGTTCTTTTACAGGGACCCTTCAATCAGAGGGAGGTCTCGTTTTTTCTGGGCTAAAATCCATGAAATCAAAATTGAATTTTTGAGCAAAACGAGAAAACGTACAGAAGATTTTTAAGCTTGAATAACACATTTTGAAACTGGTCCTTCTATATTCCAAGCCCCTCTTGGAGAGCCCTTCTATTAGGAGGTCCTTCTATTGAAGAGGTTTTCCTTATACTTTGACTGTTTTTCTGAAGACTTTATTGGTAGACTATTTTTCTACGAAAGATAAAAAAAAGGATGAGATTAGTGTATTGTTTTACTTATCATTTTTGAAGTGTTCACTTTTTTATTTGATGAGATCAGATTATGGATTCAGGCTTTTTAGTCTAAGAGTTGAGATTTTGAACATTTAAATTTTTCCTGTACTGCTTCCAATAAATTCAATTTTATGTAAATTCGAAATCTTTAAAAAATGTAACTCAGAGAACAGTATAAAAGATTGACAGATCATACCTTTTCTTGGGATTAGAACTTTGAAATTTTGGGAGATGTTGAGAATTGGATTTTTTTTAATTTTTGAGAGAAACTCTGACAACTTTCAGGAATAAAGATTTTTTAGAAATACTTTTTTTCAAAATTCTCCTTTTTCATAGATTCTATCTTCCTA</canonical>
            <polymorphic>TTTTTGGATTCTCTTTCTCTCAACTATACACATATTTTAATTTCCCGTGTGAGGTGTATCTATGTTATCTCCTAAACTCTGTTTCGTTTTTTCTTATTACGACTTCTGTTTTTTTTTCTAATCTTGGCATGTTTATTAGCATAGGGATGTGGGGAATAGTCTAGAAGCCACGTGTACATTCAGGTTTCAGATATCATTTTTACGGTATTCAAGAGATACATCAGTGACCGAAAAAGAAATGACGATGTTAATTGGAAAAGGGTGTCATCTCTGGGAAACTGAACACCGTAAAACCTGTATTACTAGAAGTTAGAAGAGCAGGTATTGTTCCAAGGGGCCTCCGGAGAGTTCGTTCTTTTACAGGGACCCTTCAATCAGAGGGAGGTCTCGTTTTTTCTGGGCTAAAATCCATGAAATCAAAATTGAATTTTTGAGCAAAACGAGAAAACGTACAGAAGATTTTTAAGCTTGAATAACACATTTTGAAACTGGTCCTTCTWTATTCCAAGCCCCTCTTGGAGAGCCCTTCTATTAGGAGGTCCTTCTATTGAAGAGGTTTTCCTTATACTTTGACTGTTTTTCTGAAGACTTTATTGGTAGACTATTTTTCTACGAAAGATAAAAAAAAGGATGAGATTAGTGTATTGTTTTACTTATCATTTTTGAAGTGTTCACTTTTTTATTTGATGAGATCAGATTATGGATTCAGGCTTTTTAGTCTAAGAGTTGAGATTTTGAACATTTAAATTTTTCCTGTACTGCTTCCAATAAATTCAATTTTATGTAAATTCGAAATCTTTAAAAAATGTAACTCAGAGAACAGTATAAAAGATTGACAGATCATACCTTTTCTTGGGATTAGAACTTTGAAATTTTGGGAGATGTTGAGAATTGGATTTTTTTTAATTTTTGAGAGAAACTCTGACAACTTTCAGGAATAAAGATTTTTTAGAAATACTTTTTTTCAAAATTCTCCTTTTTCATAGATTCTATCTTCCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACGAGAAAACGTACAGAAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGTGAACACTTCAAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAAACGAGAAAACGTACAGAAGATTTTTAAGCTTGAATAACACATTTTGAAACTGGTCCTTCTATATTCCAAGCCCCTCTTGGAGAGCCCTTCTATTAGGAGGTCCTTCTATTGAAGAGGTTTTCCTTATACTTTGACTGTTTTTCTGAAGACTTTATTGGTAGACTATTTTTCTACGAAAGATAAAAAAAAGGATGAGATTAGTGTATTGTTTTACTTATCATTTTTGAAGTGTTCACTTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAACGAGAAAACGTACAGAAGATTTTTAAGCTTGAATAACACATTTTGAAACTGGTCCTTCTWTATTCCAAGCCCCTCTTGGAGAGCCCTTCTATTAGGAGGTCCTTCTATTGAAGAGGTTTTCCTTATACTTTGACTGTTTTTCTGAAGACTTTATTGGTAGACTATTTTTCTACGAAAGATAAAAAAAAGGATGAGATTAGTGTATTGTTTTACTTATCATTTTTGAAGTGTTCACTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27211</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>124807</contig_pos>
        <strand>+</strand>
        <context>TCTWTATTCC[A/G]AGCCCCTCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGATTTTTAAGCTTGAATAACACATTTTGAAACTGGTCCTTCTATATTCC</left_flank>
        <right_flank>AGCCCCTCTTGGAGAGCCCTTCTATTAGGAGGTCCTTCTATTGAAGAGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCTCTTTCTCTCAACTATACACATATTTTAATTTCCCGTGTGAGGTGTATCTATGTTATCTCCTAAACTCTGTTTCGTTTTTTCTTATTACGACTTCTGTTTTTTTTTCTAATCTTGGCATGTTTATTAGCATAGGGATGTGGGGAATAGTCTAGAAGCCACGTGTACATTCAGGTTTCAGATATCATTTTTACGGTATTCAAGAGATACATCAGTGACCGAAAAAGAAATGACGATGTTAATTGGAAAAGGGTGTCATCTCTGGGAAACTGAACACCGTAAAACCTGTATTACTAGAAGTTAGAAGAGCAGGTATTGTTCCAAGGGGCCTCCGGAGAGTTCGTTCTTTTACAGGGACCCTTCAATCAGAGGGAGGTCTCGTTTTTTCTGGGCTAAAATCCATGAAATCAAAATTGAATTTTTGAGCAAAACGAGAAAACGTACAGAAGATTTTTAAGCTTGAATAACACATTTTGAAACTGGTCCTTCTATATTCCAAGCCCCTCTTGGAGAGCCCTTCTATTAGGAGGTCCTTCTATTGAAGAGGTTTTCCTTATACTTTGACTGTTTTTCTGAAGACTTTATTGGTAGACTATTTTTCTACGAAAGATAAAAAAAAGGATGAGATTAGTGTATTGTTTTACTTATCATTTTTGAAGTGTTCACTTTTTTATTTGATGAGATCAGATTATGGATTCAGGCTTTTTAGTCTAAGAGTTGAGATTTTGAACATTTAAATTTTTCCTGTACTGCTTCCAATAAATTCAATTTTATGTAAATTCGAAATCTTTAAAAAATGTAACTCAGAGAACAGTATAAAAGATTGACAGATCATACCTTTTCTTGGGATTAGAACTTTGAAATTTTGGGAGATGTTGAGAATTGGATTTTTTTTAATTTTTGAGAGAAACTCTGACAACTTTCAGGAATAAAGATTTTTTAGAAATACTTTTTTTCAAAATTCTCCTTTTTCATAGATTCTATCTTCCTAGACCCAT</canonical>
            <polymorphic>ATTCTCTTTCTCTCAACTATACACATATTTTAATTTCCCGTGTGAGGTGTATCTATGTTATCTCCTAAACTCTGTTTCGTTTTTTCTTATTACGACTTCTGTTTTTTTTTCTAATCTTGGCATGTTTATTAGCATAGGGATGTGGGGAATAGTCTAGAAGCCACGTGTACATTCAGGTTTCAGATATCATTTTTACGGTATTCAAGAGATACATCAGTGACCGAAAAAGAAATGACGATGTTAATTGGAAAAGGGTGTCATCTCTGGGAAACTGAACACCGTAAAACCTGTATTACTAGAAGTTAGAAGAGCAGGTATTGTTCCAAGGGGCCTCCGGAGAGTTCGTTCTTTTACAGGGACCCTTCAATCAGAGGGAGGTCTCGTTTTTTCTGGGCTAAAATCCATGAAATCAAAATTGAATTTTTGAGCAAAACGAGAAAACGTACAGAAGATTTTTAAGCTTGAATAACACATTTTGAAACTGGTCCTTCTATATTCCRAGCCCCTCTTGGAGAGCCCTTCTATTAGGAGGTCCTTCTATTGAAGAGGTTTTCCTTATACTTTGACTGTTTTTCTGAAGACTTTATTGGTAGACTATTTTTCTACGAAAGATAAAAAAAAGGATGAGATTAGTGTATTGTTTTACTTATCATTTTTGAAGTGTTCACTTTTTTATTTGATGAGATCAGATTATGGATTCAGGCTTTTTAGTCTAAGAGTTGAGATTTTGAACATTTAAATTTTTCCTGTACTGCTTCCAATAAATTCAATTTTATGTAAATTCGAAATCTTTAAAAAATGTAACTCAGAGAACAGTATAAAAGATTGACAGATCATACCTTTTCTTGGGATTAGAACTTTGAAATTTTGGGAGATGTTGAGAATTGGATTTTTTTTAATTTTTGAGAGAAACTCTGACAACTTTCAGGAATAAAGATTTTTTAGAAATACTTTTTTTCAAAATTCTCCTTTTTCATAGATTCTATCTTCCTAGACCCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>XcmI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACGAGAAAACGTACAGAAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGTGAACACTTCAAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAAACGAGAAAACGTACAGAAGATTTTTAAGCTTGAATAACACATTTTGAAACTGGTCCTTCTATATTCCAAGCCCCTCTTGGAGAGCCCTTCTATTAGGAGGTCCTTCTATTGAAGAGGTTTTCCTTATACTTTGACTGTTTTTCTGAAGACTTTATTGGTAGACTATTTTTCTACGAAAGATAAAAAAAAGGATGAGATTAGTGTATTGTTTTACTTATCATTTTTGAAGTGTTCACTTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAACGAGAAAACGTACAGAAGATTTTTAAGCTTGAATAACACATTTTGAAACTGGTCCTTCTATATTCCRAGCCCCTCTTGGAGAGCCCTTCTATTAGGAGGTCCTTCTATTGAAGAGGTTTTCCTTATACTTTGACTGTTTTTCTGAAGACTTTATTGGTAGACTATTTTTCTACGAAAGATAAAAAAAAGGATGAGATTAGTGTATTGTTTTACTTATCATTTTTGAAGTGTTCACTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27212</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>124922</contig_pos>
        <strand>+</strand>
        <context>ACGAAAGATA[A/T]AAAAAAGGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACTGTTTTTCTGAAGACTTTATTGGTAGACTATTTTTCTACGAAAGATA</left_flank>
        <right_flank>AAAAAAGGATGAGATTAGTGTATTGTTTTACTTATCATTTTTGAAGTGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGGCATGTTTATTAGCATAGGGATGTGGGGAATAGTCTAGAAGCCACGTGTACATTCAGGTTTCAGATATCATTTTTACGGTATTCAAGAGATACATCAGTGACCGAAAAAGAAATGACGATGTTAATTGGAAAAGGGTGTCATCTCTGGGAAACTGAACACCGTAAAACCTGTATTACTAGAAGTTAGAAGAGCAGGTATTGTTCCAAGGGGCCTCCGGAGAGTTCGTTCTTTTACAGGGACCCTTCAATCAGAGGGAGGTCTCGTTTTTTCTGGGCTAAAATCCATGAAATCAAAATTGAATTTTTGAGCAAAACGAGAAAACGTACAGAAGATTTTTAAGCTTGAATAACACATTTTGAAACTGGTCCTTCTATATTCCAAGCCCCTCTTGGAGAGCCCTTCTATTAGGAGGTCCTTCTATTGAAGAGGTTTTCCTTATACTTTGACTGTTTTTCTGAAGACTTTATTGGTAGACTATTTTTCTACGAAAGATAAAAAAAAGGATGAGATTAGTGTATTGTTTTACTTATCATTTTTGAAGTGTTCACTTTTTTATTTGATGAGATCAGATTATGGATTCAGGCTTTTTAGTCTAAGAGTTGAGATTTTGAACATTTAAATTTTTCCTGTACTGCTTCCAATAAATTCAATTTTATGTAAATTCGAAATCTTTAAAAAATGTAACTCAGAGAACAGTATAAAAGATTGACAGATCATACCTTTTCTTGGGATTAGAACTTTGAAATTTTGGGAGATGTTGAGAATTGGATTTTTTTTAATTTTTGAGAGAAACTCTGACAACTTTCAGGAATAAAGATTTTTTAGAAATACTTTTTTTCAAAATTCTCCTTTTTCATAGATTCTATCTTCCTAGACCCATAATTTTTGATCCCTAGATTAGTGACGGATTTCTTATTCATATTAATACGAACTGTTTTTTTCCAGATTTTCTGTCTGACTTGTCTTCCTGAACTATCCAAAACACGACTAATGTA</canonical>
            <polymorphic>CTTGGCATGTTTATTAGCATAGGGATGTGGGGAATAGTCTAGAAGCCACGTGTACATTCAGGTTTCAGATATCATTTTTACGGTATTCAAGAGATACATCAGTGACCGAAAAAGAAATGACGATGTTAATTGGAAAAGGGTGTCATCTCTGGGAAACTGAACACCGTAAAACCTGTATTACTAGAAGTTAGAAGAGCAGGTATTGTTCCAAGGGGCCTCCGGAGAGTTCGTTCTTTTACAGGGACCCTTCAATCAGAGGGAGGTCTCGTTTTTTCTGGGCTAAAATCCATGAAATCAAAATTGAATTTTTGAGCAAAACGAGAAAACGTACAGAAGATTTTTAAGCTTGAATAACACATTTTGAAACTGGTCCTTCTATATTCCAAGCCCCTCTTGGAGAGCCCTTCTATTAGGAGGTCCTTCTATTGAAGAGGTTTTCCTTATACTTTGACTGTTTTTCTGAAGACTTTATTGGTAGACTATTTTTCTACGAAAGATAWAAAAAAGGATGAGATTAGTGTATTGTTTTACTTATCATTTTTGAAGTGTTCACTTTTTTATTTGATGAGATCAGATTATGGATTCAGGCTTTTTAGTCTAAGAGTTGAGATTTTGAACATTTAAATTTTTCCTGTACTGCTTCCAATAAATTCAATTTTATGTAAATTCGAAATCTTTAAAAAATGTAACTCAGAGAACAGTATAAAAGATTGACAGATCATACCTTTTCTTGGGATTAGAACTTTGAAATTTTGGGAGATGTTGAGAATTGGATTTTTTTTAATTTTTGAGAGAAACTCTGACAACTTTCAGGAATAAAGATTTTTTAGAAATACTTTTTTTCAAAATTCTCCTTTTTCATAGATTCTATCTTCCTAGACCCATAATTTTTGATCCCTAGATTAGTGACGGATTTCTTATTCATATTAATACGAACTGTTTTTTTCCAGATTTTCTGTCTGACTTGTCTTCCTGAACTATCCAAAACACGACTAATGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTGAATAACACATTTTGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TAAAAAGCCTGAATCCATAATCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCTTGAATAACACATTTTGAAACTGGTCCTTCTATATTCCAAGCCCCTCTTGGAGAGCCCTTCTATTAGGAGGTCCTTCTATTGAAGAGGTTTTCCTTATACTTTGACTGTTTTTCTGAAGACTTTATTGGTAGACTATTTTTCTACGAAAGATAAAAAAAAGGATGAGATTAGTGTATTGTTTTACTTATCATTTTTGAAGTGTTCACTTTTTTATTTGATGAGATCAGATTATGGATTCAGGCTTTTTA</canonical_amplicon>
		<polymorphic_amplicon>GCTTGAATAACACATTTTGAAACTGGTCCTTCTATATTCCAAGCCCCTCTTGGAGAGCCCTTCTATTAGGAGGTCCTTCTATTGAAGAGGTTTTCCTTATACTTTGACTGTTTTTCTGAAGACTTTATTGGTAGACTATTTTTCTACGAAAGATAWAAAAAAGGATGAGATTAGTGTATTGTTTTACTTATCATTTTTGAAGTGTTCACTTTTTTATTTGATGAGATCAGATTATGGATTCAGGCTTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27213</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>124989</contig_pos>
        <strand>+</strand>
        <context>TTTATTTGAT[C/G]AGATCAGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGTGTATTGTTTTACTTATCATTTTTGAAGTGTTCACTTTTTTATTTGAT</left_flank>
        <right_flank>AGATCAGATTATGGATTCAGGCTTTTTAGTCTAAGAGTTGAGATTTTGAA</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATATCATTTTTACGGTATTCAAGAGATACATCAGTGACCGAAAAAGAAATGACGATGTTAATTGGAAAAGGGTGTCATCTCTGGGAAACTGAACACCGTAAAACCTGTATTACTAGAAGTTAGAAGAGCAGGTATTGTTCCAAGGGGCCTCCGGAGAGTTCGTTCTTTTACAGGGACCCTTCAATCAGAGGGAGGTCTCGTTTTTTCTGGGCTAAAATCCATGAAATCAAAATTGAATTTTTGAGCAAAACGAGAAAACGTACAGAAGATTTTTAAGCTTGAATAACACATTTTGAAACTGGTCCTTCTATATTCCAAGCCCCTCTTGGAGAGCCCTTCTATTAGGAGGTCCTTCTATTGAAGAGGTTTTCCTTATACTTTGACTGTTTTTCTGAAGACTTTATTGGTAGACTATTTTTCTACGAAAGATAAAAAAAAGGATGAGATTAGTGTATTGTTTTACTTATCATTTTTGAAGTGTTCACTTTTTTATTTGATGAGATCAGATTATGGATTCAGGCTTTTTAGTCTAAGAGTTGAGATTTTGAACATTTAAATTTTTCCTGTACTGCTTCCAATAAATTCAATTTTATGTAAATTCGAAATCTTTAAAAAATGTAACTCAGAGAACAGTATAAAAGATTGACAGATCATACCTTTTCTTGGGATTAGAACTTTGAAATTTTGGGAGATGTTGAGAATTGGATTTTTTTTAATTTTTGAGAGAAACTCTGACAACTTTCAGGAATAAAGATTTTTTAGAAATACTTTTTTTCAAAATTCTCCTTTTTCATAGATTCTATCTTCCTAGACCCATAATTTTTGATCCCTAGATTAGTGACGGATTTCTTATTCATATTAATACGAACTGTTTTTTTCCAGATTTTCTGTCTGACTTGTCTTCCTGAACTATCCAAAACACGACTAATGTAAATTATATATTATATAATTTAAAAAATTTATAAGCTCAACTTTTTTTTGCTATTTTTTATATCCAAT</canonical>
            <polymorphic>GATATCATTTTTACGGTATTCAAGAGATACATCAGTGACCGAAAAAGAAATGACGATGTTAATTGGAAAAGGGTGTCATCTCTGGGAAACTGAACACCGTAAAACCTGTATTACTAGAAGTTAGAAGAGCAGGTATTGTTCCAAGGGGCCTCCGGAGAGTTCGTTCTTTTACAGGGACCCTTCAATCAGAGGGAGGTCTCGTTTTTTCTGGGCTAAAATCCATGAAATCAAAATTGAATTTTTGAGCAAAACGAGAAAACGTACAGAAGATTTTTAAGCTTGAATAACACATTTTGAAACTGGTCCTTCTATATTCCAAGCCCCTCTTGGAGAGCCCTTCTATTAGGAGGTCCTTCTATTGAAGAGGTTTTCCTTATACTTTGACTGTTTTTCTGAAGACTTTATTGGTAGACTATTTTTCTACGAAAGATAAAAAAAAGGATGAGATTAGTGTATTGTTTTACTTATCATTTTTGAAGTGTTCACTTTTTTATTTGATSAGATCAGATTATGGATTCAGGCTTTTTAGTCTAAGAGTTGAGATTTTGAACATTTAAATTTTTCCTGTACTGCTTCCAATAAATTCAATTTTATGTAAATTCGAAATCTTTAAAAAATGTAACTCAGAGAACAGTATAAAAGATTGACAGATCATACCTTTTCTTGGGATTAGAACTTTGAAATTTTGGGAGATGTTGAGAATTGGATTTTTTTTAATTTTTGAGAGAAACTCTGACAACTTTCAGGAATAAAGATTTTTTAGAAATACTTTTTTTCAAAATTCTCCTTTTTCATAGATTCTATCTTCCTAGACCCATAATTTTTGATCCCTAGATTAGTGACGGATTTCTTATTCATATTAATACGAACTGTTTTTTTCCAGATTTTCTGTCTGACTTGTCTTCCTGAACTATCCAAAACACGACTAATGTAAATTATATATTATATAATTTAAAAAATTTATAAGCTCAACTTTTTTTTGCTATTTTTTATATCCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGTCCTTCTATTGAAGAGGTT</pcr_primer_p1>
		<pcr_primer_p2>AATTGAATTTATTGGAAGCAGTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AGGTCCTTCTATTGAAGAGGTTTTCCTTATACTTTGACTGTTTTTCTGAAGACTTTATTGGTAGACTATTTTTCTACGAAAGATAAAAAAAAGGATGAGATTAGTGTATTGTTTTACTTATCATTTTTGAAGTGTTCACTTTTTTATTTGATGAGATCAGATTATGGATTCAGGCTTTTTAGTCTAAGAGTTGAGATTTTGAACATTTAAATTTTTCCTGTACTGCTTCCAATAAATTCAATT</canonical_amplicon>
		<polymorphic_amplicon>AGGTCCTTCTATTGAAGAGGTTTTCCTTATACTTTGACTGTTTTTCTGAAGACTTTATTGGTAGACTATTTTTCTACGAAAGATAAAAAAAAGGATGAGATTAGTGTATTGTTTTACTTATCATTTTTGAAGTGTTCACTTTTTTATTTGATSAGATCAGATTATGGATTCAGGCTTTTTAGTCTAAGAGTTGAGATTTTGAACATTTAAATTTTTCCTGTACTGCTTCCAATAAATTCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27214</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>143043</contig_pos>
        <strand>+</strand>
        <context>TTTGATTAGT[A/T]AGGTTTAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGTTCTATTAGAGGTTTTACGGTAGTTATTTTCCTCTTCTTTGATTAGT</left_flank>
        <right_flank>AGGTTTAATATCATCTCCTTCGTTTCCTTTTCCATCAACACTCCTCACAT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGATTTTTGCTTTATGACCTAAGAAAACAAATAAGATTTGATTTTATTGAAAACATTGGATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGANNNNNNNNNNAAACTTTGGACAAGTTGGCCGATAATGAAACGCAAAGATGCTTTTGTGTTGCGTCGTTGTGATTTAATGAAGACAAAGAACGAAATTTTAAAAATAAGTGACACAGTTTTGAGCATATTGCCGGGTTTTCGACCTGCCCCCAACTTATGAACCAATGATTTCTGGAGAACTTGCTAAAATTTCCACAAAACACCGGTCAAGTAGTGTCGATGTGACTGTGTCAACTTTGAATCCGGACCGACGCAAACGTGAGAATGGAGAGGTTTATAAAGGCGACACTTTCCAAGCTACCGACGTGTGACTGATAACCTCAAAGTGGACGTTCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAGTTATTTTCCTCTTCTTTGATTAGTAAGGTTTAATATCATCTCCTTCGTTTCCTTTTCCATCAACACTCCTCACATCACAGCAGCTGCTCGCCTTACCTGTTTCAAACTTTTGTTCTGAACGTTTCTTTTTCTAATTGAATATCACAAAATTTATCGACTTTATCTGTGTGACATAAAGATACATTTATCATCCGCCGATAAATCACAATTCCATCATTAAACCCGGCTCACAAAACAGTGTACATATATCATATCAAGCACCGAATTATTGAGACAATTATTATATCGAAAATGGAAAATTTAAAAGAAAAAACACGGTGTTCGTCCCGTAGTAGTAGTAGTCGATATGCTCTTGTCTGTGTCTGTCTCTGGTAGGGGGATCGAGTCAAATTGGGGTCAGGAAAAGGGATTTTGAAAGTAAAATTGAATTGAATGAGTGGGACTGGGCGGGGAAACTAATGGGGACGGAAAATCACTCGGGGAGAAAAACCCGAGGCAGCAGCAATAATTCGAAAATTTTGAAAT</canonical>
            <polymorphic>ATGATTTTTGCTTTATGACCTAAGAAAACAAATAAGATTTGATTTTATTGAAAACATTGGATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGANNNNNNNNNNAAACTTTGGACAAGTTGGCCGATAATGAAACGCAAAGATGCTTTTGTGTTGCGTCGTTGTGATTTAATGAAGACAAAGAACGAAATTTTAAAAATAAGTGACACAGTTTTGAGCATATTGCCGGGTTTTCGACCTGCCCCCAACTTATGAACCAATGATTTCTGGAGAACTTGCTAAAATTTCCACAAAACACCGGTCAAGTAGTGTCGATGTGACTGTGTCAACTTTGAATCCGGACCGACGCAAACGTGAGAATGGAGAGGTTTATAAAGGCGACACTTTCCAAGCTACCGACGTGTGACTGATAACCTCAAAGTGGACGTTCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAGTTATTTTCCTCTTCTTTGATTAGTWAGGTTTAATATCATCTCCTTCGTTTCCTTTTCCATCAACACTCCTCACATCACAGCAGCTGCTCGCCTTACCTGTTTCAAACTTTTGTTCTGAACGTTTCTTTTTCTAATTGAATATCACAAAATTTATCGACTTTATCTGTGTGACATAAAGATACATTTATCATCCGCCGATAAATCACAATTCCATCATTAAACCCGGCTCACAAAACAGTGTACATATATCATATCAAGCACCGAATTATTGAGACAATTATTATATCGAAAATGGAAAATTTAAAAGAAAAAACACGGTGTTCGTCCCGTAGTAGTAGTAGTCGATATGCTCTTGTCTGTGTCTGTCTCTGGTAGGGGGATCGAGTCAAATTGGGGTCAGGAAAAGGGATTTTGAAAGTAAAATTGAATTGAATGAGTGGGACTGGGCGGGGAAACTAATGGGGACGGAAAATCACTCGGGGAGAAAAACCCGAGGCAGCAGCAATAATTCGAAAATTTTGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTGAGAATGGAGAGGTTTAT</pcr_primer_p1>
		<pcr_primer_p2>CAATTAGAAAAAGAAACGTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CGTGAGAATGGAGAGGTTTATAAAGGCGACACTTTCCAAGCTACCGACGTGTGACTGATAACCTCAAAGTGGACGTTCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAGTTATTTTCCTCTTCTTTGATTAGTAAGGTTTAATATCATCTCCTTCGTTTCCTTTTCCATCAACACTCCTCACATCACAGCAGCTGCTCGCCTTACCTGTTTCAAACTTTTGTTCTGAACGTTTCTTTTTCTAATTG</canonical_amplicon>
		<polymorphic_amplicon>CGTGAGAATGGAGAGGTTTATAAAGGCGACACTTTCCAAGCTACCGACGTGTGACTGATAACCTCAAAGTGGACGTTCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAGTTATTTTCCTCTTCTTTGATTAGTWAGGTTTAATATCATCTCCTTCGTTTCCTTTTCCATCAACACTCCTCACATCACAGCAGCTGCTCGCCTTACCTGTTTCAAACTTTTGTTCTGAACGTTTCTTTTTCTAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27215</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>175823</contig_pos>
        <strand>+</strand>
        <context>GATCTTGGAA[A/C]CGGAAAAGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGAGACACGTGGCGAAGGAGGAAAGAAGGAGAGATATCAAGATCTTGGAA</left_flank>
        <right_flank>CGGAAAAGTTAGCTCAATGAGTCAAGGATACGAGAAGACTCAAGCGAAGG</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCACTCGAACAAGGATGCCACTGATGATAGACGCAATGAGTTTATTCACAAGGGATTGGATGGAAGAATGCAGCATGAAATTAAGACCAGCAATCTCCAGAATCATAAGAATGATACGGTAATCAAAGAGGGAATTATAGTACTGATAAGAATAATTTTCAGGATGAGGTTGTCAACTCTAGCCTCCATGCCAAGTCTGCCAATGGAACCGAGATCAATGACGTTCAACACTCGGATGTTTCTCTTTCTGATCTTCAGGAATCTCAAGCCGCCGCTAAGAATGCAGTACTGAAACTTGCTGACGGAAGCACTGTCATCAACAAGGATGAGAGTCATGTCAACCACGGAAAATCCAGAAACGACGCTGCAGCTTCCCACAAGAGAAATCAAACAAATGCTGATGGATCCAGTGCTAGTTTGGATATTGGATCAAATTCTCATACGGATTTGGAGACACGTGGCGAAGGAGGAAAGAAGGAGAGATATCAAGATCTTGGAACCGGAAAAGTTAGCTCAATGAGTCAAGGATACGAGAAGACTCAAGCGAAGGGAGGAGACAAGTCTTCGAGTCATGATAGTTCATTGACCAGTGACGGAAAGGGACACTTCGTGAAGAGCAACAATGCATCTGATTCTCATCATGTTATTGATGATAAGGACATTGTCAGACATAAGGATGTCATTGTCATGTAAGATTGTGGTGTCTAGAGGTGTTTTCTTTTTTGTGTGCGTGTCAAAAATTTGGTTTTTTTATGAAATAAAGTTTCCAACTTTTTCTGGTCGAACTGTCTCTTTCAAATTGCCTTTTTTCGGTAGTCGTTGCGTTTTTGCTCTTATAGAAGCCTACCCGTGAACTTTGAGCTTACTAGGGAAGGCCGCAACTCGGGTGTGGCGATACGGGTGGTGACCTATATCATCTGAAAGCTGACATTTTCCTGATTCCAAATCTGTTTTCAAAAATTGCTTTGTCGCGGTAGTTTTCGAGAAAATTGGGTCGAAA</canonical>
            <polymorphic>GCACTCGAACAAGGATGCCACTGATGATAGACGCAATGAGTTTATTCACAAGGGATTGGATGGAAGAATGCAGCATGAAATTAAGACCAGCAATCTCCAGAATCATAAGAATGATACGGTAATCAAAGAGGGAATTATAGTACTGATAAGAATAATTTTCAGGATGAGGTTGTCAACTCTAGCCTCCATGCCAAGTCTGCCAATGGAACCGAGATCAATGACGTTCAACACTCGGATGTTTCTCTTTCTGATCTTCAGGAATCTCAAGCCGCCGCTAAGAATGCAGTACTGAAACTTGCTGACGGAAGCACTGTCATCAACAAGGATGAGAGTCATGTCAACCACGGAAAATCCAGAAACGACGCTGCAGCTTCCCACAAGAGAAATCAAACAAATGCTGATGGATCCAGTGCTAGTTTGGATATTGGATCAAATTCTCATACGGATTTGGAGACACGTGGCGAAGGAGGAAAGAAGGAGAGATATCAAGATCTTGGAAMCGGAAAAGTTAGCTCAATGAGTCAAGGATACGAGAAGACTCAAGCGAAGGGAGGAGACAAGTCTTCGAGTCATGATAGTTCATTGACCAGTGACGGAAAGGGACACTTCGTGAAGAGCAACAATGCATCTGATTCTCATCATGTTATTGATGATAAGGACATTGTCAGACATAAGGATGTCATTGTCATGTAAGATTGTGGTGTCTAGAGGTGTTTTCTTTTTTGTGTGCGTGTCAAAAATTTGGTTTTTTTATGAAATAAAGTTTCCAACTTTTTCTGGTCGAACTGTCTCTTTCAAATTGCCTTTTTTCGGTAGTCGTTGCGTTTTTGCTCTTATAGAAGCCTACCCGTGAACTTTGAGCTTACTAGGGAAGGCCGCAACTCGGGTGTGGCGATACGGGTGGTGACCTATATCATCTGAAAGCTGACATTTTCCTGATTCCAAATCTGTTTTCAAAAATTGCTTTGTCGCGGTAGTTTTCGAGAAAATTGGGTCGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 207 198 93</canonical_bands>
                <polymorphic_bands>595 207 198</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATATTGGATCAAATTCTCATA</pcr_primer_p1>
		<pcr_primer_p2>CTGACAATGTCCTTATCATCAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGATATTGGATCAAATTCTCATACGGATTTGGAGACACGTGGCGAAGGAGGAAAGAAGGAGAGATATCAAGATCTTGGAACCGGAAAAGTTAGCTCAATGAGTCAAGGATACGAGAAGACTCAAGCGAAGGGAGGAGACAAGTCTTCGAGTCATGATAGTTCATTGACCAGTGACGGAAAGGGACACTTCGTGAAGAGCAACAATGCATCTGATTCTCATCATGTTATTGATGATAAGGACATTGTCAG</canonical_amplicon>
		<polymorphic_amplicon>GGATATTGGATCAAATTCTCATACGGATTTGGAGACACGTGGCGAAGGAGGAAAGAAGGAGAGATATCAAGATCTTGGAAMCGGAAAAGTTAGCTCAATGAGTCAAGGATACGAGAAGACTCAAGCGAAGGGAGGAGACAAGTCTTCGAGTCATGATAGTTCATTGACCAGTGACGGAAAGGGACACTTCGTGAAGAGCAACAATGCATCTGATTCTCATCATGTTATTGATGATAAGGACATTGTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27216</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>181625</contig_pos>
        <strand></strand>
        <context>caaaaggtat[A/C]aaactattta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTAT</left_flank>
        <right_flank>AAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTCCTTTTGGATTCTTTATGATCTAGTCTACGTCAAAGGAAACAAAGAACTCGAACACTTCTTCTGGATCTATGGTGTCTACAACGTCTTTGTGGTCTTTCTCACACTCTTGATTCACAATTTATGGAATACTGTATACACGAGTCAGCAGAAATTGAATTTATTGAGAAACTATTTGTCTGTGTGTACAATCTTTTTAATGGTTCAATTCGTCGCAGCCGAGTATCTTTTGTTTGGAGGATCTCTCGATTTGGATTCTGTATGGACTGATGTGAGTTGGATCAGGGGGTGGGATTCATCCTCTCGAACAACAGAGCAAATTTTCAGGCTTAAAAGATCAAAACATTTCCAATCTGTAGACTTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTTGTATTAAAGGTCTACGGTATTCCAGTTTATGGGAAAATATATTTTCCTCTTTTATCTACAGGGTGGCCGATAAGTATAGGACGTTTTGAAAGTGCTCCCATTTTTTCAATTTGAGGATTTTTCGAGAACAACCTTTATTAAACAACAAAAAATAAGCAGAAAATTTGATTTTACAAGAGAAATTCGAAGTTGGATCCACGAGCTTTGACACAGGCTCTCAAACGTTTCTTCACCGAATTGACAGTGCGCCGCAGGTATCCGTCGTCGATCGAAGCCCATGCTACCTCGAGAGCGGCCTTCAAGTCATCGACAGTAGCAAAAACTTTTCCCGCGATCTTCCCTTCCAACATGCCCAAACGCTGAAATCCA</canonical>
            <polymorphic>ATTCTCCTTTTGGATTCTTTATGATCTAGTCTACGTCAAAGGAAACAAAGAACTCGAACACTTCTTCTGGATCTATGGTGTCTACAACGTCTTTGTGGTCTTTCTCACACTCTTGATTCACAATTTATGGAATACTGTATACACGAGTCAGCAGAAATTGAATTTATTGAGAAACTATTTGTCTGTGTGTACAATCTTTTTAATGGTTCAATTCGTCGCAGCCGAGTATCTTTTGTTTGGAGGATCTCTCGATTTGGATTCTGTATGGACTGATGTGAGTTGGATCAGGGGGTGGGATTCATCCTCTCGAACAACAGAGCAAATTTTCAGGCTTAAAAGATCAAAACATTTCCAATCTGTAGACTTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATMAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTTGTATTAAAGGTCTACGGTATTCCAGTTTATGGGAAAATATATTTTCCTCTTTTATCTACAGGGTGGCCGATAAGTATAGGACGTTTTGAAAGTGCTCCCATTTTTTCAATTTGAGGATTTTTCGAGAACAACCTTTATTAAACAACAAAAAATAAGCAGAAAATTTGATTTTACAAGAGAAATTCGAAGTTGGATCCACGAGCTTTGACACAGGCTCTCAAACGTTTCTTCACCGAATTGACAGTGCGCCGCAGGTATCCGTCGTCGATCGAAGCCCATGCTACCTCGAGAGCGGCCTTCAAGTCATCGACAGTAGCAAAAACTTTTCCCGCGATCTTCCCTTCCAACATGCCCAAACGCTGAAATCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAGTTAGATTGTTTCACAGT</pcr_primer_p1>
		<pcr_primer_p2>TGGAATACCGTAGACCTTTAATA</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTTGTATTAAAGGTCTACGGTATTCCA</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATMAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTTGTATTAAAGGTCTACGGTATTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27217</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>181684</contig_pos>
        <strand></strand>
        <context>catatattcc[A/C]caggaatcat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCC</left_flank>
        <right_flank>CAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTCTTCTGGATCTATGGTGTCTACAACGTCTTTGTGGTCTTTCTCACACTCTTGATTCACAATTTATGGAATACTGTATACACGAGTCAGCAGAAATTGAATTTATTGAGAAACTATTTGTCTGTGTGTACAATCTTTTTAATGGTTCAATTCGTCGCAGCCGAGTATCTTTTGTTTGGAGGATCTCTCGATTTGGATTCTGTATGGACTGATGTGAGTTGGATCAGGGGGTGGGATTCATCCTCTCGAACAACAGAGCAAATTTTCAGGCTTAAAAGATCAAAACATTTCCAATCTGTAGACTTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTTGTATTAAAGGTCTACGGTATTCCAGTTTATGGGAAAATATATTTTCCTCTTTTATCTACAGGGTGGCCGATAAGTATAGGACGTTTTGAAAGTGCTCCCATTTTTTCAATTTGAGGATTTTTCGAGAACAACCTTTATTAAACAACAAAAAATAAGCAGAAAATTTGATTTTACAAGAGAAATTCGAAGTTGGATCCACGAGCTTTGACACAGGCTCTCAAACGTTTCTTCACCGAATTGACAGTGCGCCGCAGGTATCCGTCGTCGATCGAAGCCCATGCTACCTCGAGAGCGGCCTTCAAGTCATCGACAGTAGCAAAAACTTTTCCCGCGATCTTCCCTTCCAACATGCCCAAACGCTGAAATCCATCGGATTGAGATCCGGGCTGGAAGCAGGCCACAAGTTCTTGTCCAGGAATCCAGGGAAA</canonical>
            <polymorphic>ACTTCTTCTGGATCTATGGTGTCTACAACGTCTTTGTGGTCTTTCTCACACTCTTGATTCACAATTTATGGAATACTGTATACACGAGTCAGCAGAAATTGAATTTATTGAGAAACTATTTGTCTGTGTGTACAATCTTTTTAATGGTTCAATTCGTCGCAGCCGAGTATCTTTTGTTTGGAGGATCTCTCGATTTGGATTCTGTATGGACTGATGTGAGTTGGATCAGGGGGTGGGATTCATCCTCTCGAACAACAGAGCAAATTTTCAGGCTTAAAAGATCAAAACATTTCCAATCTGTAGACTTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCMCAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTTGTATTAAAGGTCTACGGTATTCCAGTTTATGGGAAAATATATTTTCCTCTTTTATCTACAGGGTGGCCGATAAGTATAGGACGTTTTGAAAGTGCTCCCATTTTTTCAATTTGAGGATTTTTCGAGAACAACCTTTATTAAACAACAAAAAATAAGCAGAAAATTTGATTTTACAAGAGAAATTCGAAGTTGGATCCACGAGCTTTGACACAGGCTCTCAAACGTTTCTTCACCGAATTGACAGTGCGCCGCAGGTATCCGTCGTCGATCGAAGCCCATGCTACCTCGAGAGCGGCCTTCAAGTCATCGACAGTAGCAAAAACTTTTCCCGCGATCTTCCCTTCCAACATGCCCAAACGCTGAAATCCATCGGATTGAGATCCGGGCTGGAAGCAGGCCACAAGTTCTTGTCCAGGAATCCAGGGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>162 154 104 90 88 78 59 44 29 28 23 22 21 17 17 14 13 12 11 10 2 2</canonical_bands>
                <polymorphic_bands>221 154 104 90 88 78 44 29 28 23 22 21 17 17 14 13 12 11 10 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAGTTAGATTGTTTCACAGT</pcr_primer_p1>
		<pcr_primer_p2>TGGAATACCGTAGACCTTTAATA</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCACAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTTGTATTAAAGGTCTACGGTATTCCA</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAGTTAGATTGTTTCACAGTAACAACCCACTTTTGCCATTTTCAGAGTACCGTAAACTCTGTAATGGAAAGGCTCCATAACATTTAACTTTGAGCCAATTGATCTCGATTCCATAAAATATCAAAAGGTATAAAACTATTTATTATGACATTATGAACATTTTATCAGTTGACATATTTTCATATATTCCMCAGGAATCATGATAAATTGGCTCAAAGTTGAAAGTTATGGGTTTTATGCTATAAGAGTGTATGGAATGGCTTGTATTAAAGGTCTACGGTATTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27218</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>192828</contig_pos>
        <strand>+</strand>
        <context>TCTTCCTCAT[A/G]TATTTCCTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAAGACATCTGGGTTGAAAACCGGTCCTCTACGTCTTTTCTTCCTCAT</left_flank>
        <right_flank>TATTTCCTCATGTAATTTCTTTTTTTTAATTTGCCACCTCAAAGCAGTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGAAAGCCCATTCACATCGCAAGCTTTGCACCTTTAATGTCGTTTTACGAGCTGGAATTTTTTTCATTTTTATGTGTTCTTCTTCTTTCTCTTTTCTTCCGCCCACACAGAATGTTCACACACTAAACCGGTTTTTTAAAAGACGTTGCTTTTTTTTAGCTGATTGATATTTCCCTATCAGACGTTTTTCTATCTATAAAGCTATGGTTGACCTCTCTCTTGCAAGAACTTTATCTTATCATTCTGTTTCTCCCGTTATCAGGTTCATATTGCTCTCAATCTCACCCCCAATTGTGCTCCGCACTTCAGTAATATATTAATTCAAGTTTTGTTTCGAATTCTCATCGATTTCAAACGAAAATTGAGCCAAATGTTTATGTTTTGGTGGTTTTTCTAAACATTGACTGCCGCCCGCTAGGGGTTTCTAGGTGTTTAAACATTGCGGGGAAAAGACATCTGGGTTGAAAACCGGTCCTCTACGTCTTTTCTTCCTCATGTATTTCCTCATGTAATTTCTTTTTTTTAATTTGCCACCTCAAAGCAGTAATTTCTGCTTCTCTGCGTCTCTGAACAAATCCAGAGGAATCGTGCGCTCTATCGTCAATGACGTGTCTTTTCGGGATAGATCGATTCACCCAGATTGCGCAATGCAATTAGTCATGTTTTCTAGGAAATTACATACAAAATGAATATTGTCGTCGAAAATTCTTTTTTTCCTATTTCCCGCCTTTCTTTCTTTCTTTTCCTGTTGCTGCTCATGCTCCCCTGCTCCGTATCGATCCCTCTCTCCACGCGCTCCGCACTCTTTCTCCGGCCCCTTGCTATTGGGGCTCCATCAATATCTGGTCTTCGGTCCTGGTCTTCATGCTCTTTTTTCTCACGTTTTCTATTTTTTGCTTCAGAATTCTTTTAAGCCATATTTTTCCAGTAAACGACAAGATGGGTGATTACGTGACTCCTGGCGAGGAGCCACAAGAGCCAGGCATCTACCGAAGTG</canonical>
            <polymorphic>TTTCGAAAGCCCATTCACATCGCAAGCTTTGCACCTTTAATGTCGTTTTACGAGCTGGAATTTTTTTCATTTTTATGTGTTCTTCTTCTTTCTCTTTTCTTCCGCCCACACAGAATGTTCACACACTAAACCGGTTTTTTAAAAGACGTTGCTTTTTTTTAGCTGATTGATATTTCCCTATCAGACGTTTTTCTATCTATAAAGCTATGGTTGACCTCTCTCTTGCAAGAACTTTATCTTATCATTCTGTTTCTCCCGTTATCAGGTTCATATTGCTCTCAATCTCACCCCCAATTGTGCTCCGCACTTCAGTAATATATTAATTCAAGTTTTGTTTCGAATTCTCATCGATTTCAAACGAAAATTGAGCCAAATGTTTATGTTTTGGTGGTTTTTCTAAACATTGACTGCCGCCCGCTAGGGGTTTCTAGGTGTTTAAACATTGCGGGGAAAAGACATCTGGGTTGAAAACCGGTCCTCTACGTCTTTTCTTCCTCATRTATTTCCTCATGTAATTTCTTTTTTTTAATTTGCCACCTCAAAGCAGTAATTTCTGCTTCTCTGCGTCTCTGAACAAATCCAGAGGAATCGTGCGCTCTATCGTCAATGACGTGTCTTTTCGGGATAGATCGATTCACCCAGATTGCGCAATGCAATTAGTCATGTTTTCTAGGAAATTACATACAAAATGAATATTGTCGTCGAAAATTCTTTTTTTCCTATTTCCCGCCTTTCTTTCTTTCTTTTCCTGTTGCTGCTCATGCTCCCCTGCTCCGTATCGATCCCTCTCTCCACGCGCTCCGCACTCTTTCTCCGGCCCCTTGCTATTGGGGCTCCATCAATATCTGGTCTTCGGTCCTGGTCTTCATGCTCTTTTTTCTCACGTTTTCTATTTTTTGCTTCAGAATTCTTTTAAGCCATATTTTTCCAGTAAACGACAAGATGGGTGATTACGTGACTCCTGGCGAGGAGCCACAAGAGCCAGGCATCTACCGAAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>497 153 133 107 98 12</canonical_bands>
                <polymorphic_bands>509 153 133 107 98</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTTTGTTTCGAATTCTCAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTGTTCAGAGACGCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAGTTTTGTTTCGAATTCTCATCGATTTCAAACGAAAATTGAGCCAAATGTTTATGTTTTGGTGGTTTTTCTAAACATTGACTGCCGCCCGCTAGGGGTTTCTAGGTGTTTAAACATTGCGGGGAAAAGACATCTGGGTTGAAAACCGGTCCTCTACGTCTTTTCTTCCTCATGTATTTCCTCATGTAATTTCTTTTTTTTAATTTGCCACCTCAAAGCAGTAATTTCTGCTTCTCTGCGTCTCTGAACAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAGTTTTGTTTCGAATTCTCATCGATTTCAAACGAAAATTGAGCCAAATGTTTATGTTTTGGTGGTTTTTCTAAACATTGACTGCCGCCCGCTAGGGGTTTCTAGGTGTTTAAACATTGCGGGGAAAAGACATCTGGGTTGAAAACCGGTCCTCTACGTCTTTTCTTCCTCATRTATTTCCTCATGTAATTTCTTTTTTTTAATTTGCCACCTCAAAGCAGTAATTTCTGCTTCTCTGCGTCTCTGAACAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27219</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>193261</contig_pos>
        <strand>+</strand>
        <context>TTTTTCCAGW[A/T]AACGACAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACGTTTTCTATTTTTTGCTTCAGAATTCTTTTAAGCCATATTTTTCCAGT</left_flank>
        <right_flank>AACGACAAGATGGGTGATTACGTGACTCCTGGCGAGGAGCCACAAGAGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTAAACATTGCGGGGAAAAGACATCTGGGTTGAAAACCGGTCCTCTACGTCTTTTCTTCCTCATGTATTTCCTCATGTAATTTCTTTTTTTTAATTTGCCACCTCAAAGCAGTAATTTCTGCTTCTCTGCGTCTCTGAACAAATCCAGAGGAATCGTGCGCTCTATCGTCAATGACGTGTCTTTTCGGGATAGATCGATTCACCCAGATTGCGCAATGCAATTAGTCATGTTTTCTAGGAAATTACATACAAAATGAATATTGTCGTCGAAAATTCTTTTTTTCCTATTTCCCGCCTTTCTTTCTTTCTTTTCCTGTTGCTGCTCATGCTCCCCTGCTCCGTATCGATCCCTCTCTCCACGCGCTCCGCACTCTTTCTCCGGCCCCTTGCTATTGGGGCTCCATCAATATCTGGTCTTCGGTCCTGGTCTTCATGCTCTTTTTTCTCACGTTTTCTATTTTTTGCTTCAGAATTCTTTTAAGCCATATTTTTCCAGTAAACGACAAGATGGGTGATTACGTGACTCCTGGCGAGGAGCCACAAGAGCCAGGCATCTACCGAAGTGAGCAGATGTGTTTGGCACAGCTCTATCTTCAATCCGATGCCTCTTATCAGTGTGTTGCCGAGTTGGGAGAGCTGGGACTCGTGCAGTTTCGTGATGTGAGTGCTTTGAGTGAAATCTCTTACTCATTAAATTTTGCTTCAGTTAAACCCAGACGTCAGCTCTTTCCAACGAAAATATGTGAACGAGGTGAGACGATGTGATGAGATGGAAAGGAAATTGAGTGAGTATTTAAATTTCTATGATTTCGAGAACGAAATTTTAAATTTTAGGATTCCTGGAGCGTGAAATCAAAAAAGATCAGATTCCAATGCTAGACACCGGCGAGAATCCCGATGCGCCGTTGCCAAGAGAGATGATTGATTTAGAGGTGCTCTTCAAGAAACCAAAATTCCTTAAAACTAATAATTTTCTAGGCCACATTCGAAAAACTCGA</canonical>
            <polymorphic>GTTTAAACATTGCGGGGAAAAGACATCTGGGTTGAAAACCGGTCCTCTACGTCTTTTCTTCCTCATGTATTTCCTCATGTAATTTCTTTTTTTTAATTTGCCACCTCAAAGCAGTAATTTCTGCTTCTCTGCGTCTCTGAACAAATCCAGAGGAATCGTGCGCTCTATCGTCAATGACGTGTCTTTTCGGGATAGATCGATTCACCCAGATTGCGCAATGCAATTAGTCATGTTTTCTAGGAAATTACATACAAAATGAATATTGTCGTCGAAAATTCTTTTTTTCCTATTTCCCGCCTTTCTTTCTTTCTTTTCCTGTTGCTGCTCATGCTCCCCTGCTCCGTATCGATCCCTCTCTCCACGCGCTCCGCACTCTTTCTCCGGCCCCTTGCTATTGGGGCTCCATCAATATCTGGTCTTCGGTCCTGGTCTTCATGCTCTTTTTTCTCACGTTTTCTATTTTTTGCTTCAGAATTCTTTTAAGCCATATTTTTCCAGTWAACGACAAGATGGGTGATTACGTGACTCCTGGCGAGGAGCCACAAGAGCCAGGCATCTACCGAAGTGAGCAGATGTGTTTGGCACAGCTCTATCTTCAATCCGATGCCTCTTATCAGTGTGTTGCCGAGTTGGGAGAGCTGGGACTCGTGCAGTTTCGTGATGTGAGTGCTTTGAGTGAAATCTCTTACTCATTAAATTTTGCTTCAGTTAAACCCAGACGTCAGCTCTTTCCAACGAAAATATGTGAACGAGGTGAGACGATGTGATGAGATGGAAAGGAAATTGAGTGAGTATTTAAATTTCTATGATTTCGAGAACGAAATTTTAAATTTTAGGATTCCTGGAGCGTGAAATCAAAAAAGATCAGATTCCAATGCTAGACACCGGCGAGAATCCCGATGCGCCGTTGCCAAGAGAGATGATTGATTTAGAGGTGCTCTTCAAGAAACCAAAATTCCTTAAAACTAATAATTTTCTAGGCCACATTCGAAAAACTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTCACGTTTTCTATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AGATTTCACTCAAAGCACTCAC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTCACGTTTTCTATTTTTTGCTTCAGAATTCTTTTAAGCCATATTTTTCCAGTAAACGACAAGATGGGTGATTACGTGACTCCTGGCGAGGAGCCACAAGAGCCAGGCATCTACCGAAGTGAGCAGATGTGTTTGGCACAGCTCTATCTTCAATCCGATGCCTCTTATCAGTGTGTTGCCGAGTTGGGAGAGCTGGGACTCGTGCAGTTTCGTGATGTGAGTGCTTTGAGTGAAATCT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTCACGTTTTCTATTTTTTGCTTCAGAATTCTTTTAAGCCATATTTTTCCAGTWAACGACAAGATGGGTGATTACGTGACTCCTGGCGAGGAGCCACAAGAGCCAGGCATCTACCGAAGTGAGCAGATGTGTTTGGCACAGCTCTATCTTCAATCCGATGCCTCTTATCAGTGTGTTGCCGAGTTGGGAGAGCTGGGACTCGTGCAGTTTCGTGATGTGAGTGCTTTGAGTGAAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27220</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>219601</contig_pos>
        <strand>+</strand>
        <context>CCTATATTGY[C/T]CCATAAAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGC</left_flank>
        <right_flank>CCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGAACGCAAGGCAAGACAAACATTTATGCAAGACAAGACAAGACCCGTCAAGACGAGACAAAAGCAAAGTCATGCAAGAAATTTCTCGCGAGACGACACTCTAGTACTTACTTGACCGTTGCTTTTTAGAATATTCGAAGCAAGGGAATGAAATGTCTGTGTGTCTGTATTGTCTAGTTAGTTCAGAAAATTCAAGTTTTCTTTGTTTTCAGATTTCTTTCCTTGATTTCTCAATCTCGACTCAACAGCTACAAAAATTAAAAAAGGCTTCAACTATCCGCATACTCAAAAGCTTCGAATTTCTTGTTTTCCAGGGACCACATTGTTGCAACGCCTAGTCATTTTGTCTGCACCTAAAGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGTGTCCCTTCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGCACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGTATGCAATTCTCGATTGTTTACTTCCTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATCATGATTGTCTCGTTCATCTGGAGATTCAATCAATGGAATATTCTGAAACTGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTCTATTCATTTTCAAATTCTCCATCATTTCTCTGGAGTATCACTTTCCGATGTCTCTTCTCAGCTATTCAAATTGGATAACAATGGCATTTGGGAGCCACGTGTCATTGATTCGAATCAAGTGATTCTATCGATTCAATCCAATTTCCACTGTCAAAAAGGATTCTATGGACCAATTTGTGAA</canonical>
            <polymorphic>GCGAACGCAAGGCAAGACAAACATTTATGCAAGACAAGACAAGACCCGTCAAGACGAGACAAAAGCAAAGTCATGCAAGAAATTTCTCGCGAGACGACACTCTAGTACTTACTTGACCGTTGCTTTTTAGAATATTCGAAGCAAGGGAATGAAATGTCTGTGTGTCTGTATTGTCTAGTTAGTTCAGAAAATTCAAGTTTTCTTTGTTTTCAGATTTCTTTCCTTGATTTCTCAATCTCGACTCAACAGCTACAAAAATTAAAAAAGGCTTCAACTATCCGCATACTCAAAAGCTTCGAATTTCTTGTTTTCCAGGGACCACATTGTTGCAACGCCTAGTCATTTTGTCTGCACCTAAAGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGTGTCCCTTCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGCYCCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGTATGCAATTCTCGATTGTTTACTTCCTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATCATGATTGTCTCGTTCATCTGGAGATTCAATCAATGGAATATTCTGAAACTGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTCTATTCATTTTCAAATTCTCCATCATTTCTCTGGAGTATCACTTTCCGATGTCTCTTCTCAGCTATTCAAATTGGATAACAATGGCATTTGGGAGCCACGTGTCATTGATTCGAATCAAGTGATTCTATCGATTCAATCCAATTTCCACTGTCAAAAAGGATTCTATGGACCAATTTGTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>384 254 118 95 52 46 29 22</canonical_bands>
                <polymorphic_bands>384 254 213 52 46 29 22</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>157 143 128 99 63 57 57 57 53 32 32 26 25 21 20 12 10 4 2 2</canonical_bands>
                <polymorphic_bands>200 157 128 99 63 57 57 53 32 32 26 25 21 20 12 10 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACACAAAAATGATTACAAA</pcr_primer_p1>
		<pcr_primer_p2>ACTGATATAATGAATGGGTACTTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGTGTCCCTTCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGCACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGT</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGTGTCCCTTCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGCYCCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27221</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>219902</contig_pos>
        <strand>+</strand>
        <context>TTTACACCAG[A/G]AATCACCAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAG</left_flank>
        <right_flank>AATCACCAATCAACTTTCTATTCATTTTCAAATTCTCCATCATTTCTCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTGTTTTCCAGGGACCACATTGTTGCAACGCCTAGTCATTTTGTCTGCACCTAAAGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGTGTCCCTTCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGCACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGTATGCAATTCTCGATTGTTTACTTCCTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATCATGATTGTCTCGTTCATCTGGAGATTCAATCAATGGAATATTCTGAAACTGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTCTATTCATTTTCAAATTCTCCATCATTTCTCTGGAGTATCACTTTCCGATGTCTCTTCTCAGCTATTCAAATTGGATAACAATGGCATTTGGGAGCCACGTGTCATTGATTCGAATCAAGTGATTCTATCGATTCAATCCAATTTCCACTGTCAAAAAGGATTCTATGGACCAATTTGTGAACGTCGTTCGAGAAGCACTTCTACTATTAAAACAACGACTTCTATTCCAACTGCCACGTCATCACCATTTCATCTTCCAATCAGTGAGGTCCAAATTAATAAGTAAGTTTTCAATTTCTTCTTCTTTAATCCAAATCTATAATAAATATTTTTCAGCCTAATCATCTATGCAGTTCTATCATCAGTGGTCCTTCTTCTAATCATTGCCAACTGTTTCCTGTGTTTCTGTCGTCCTAAACCATCCAAATACATTGATTACACATTCCAAAACGTCTTCCCAATGGATGAATTCTTCCCAATGG</canonical>
            <polymorphic>TTCTTGTTTTCCAGGGACCACATTGTTGCAACGCCTAGTCATTTTGTCTGCACCTAAAGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGTGTCCCTTCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGCACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGTATGCAATTCTCGATTGTTTACTTCCTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATCATGATTGTCTCGTTCATCTGGAGATTCAATCAATGGAATATTCTGAAACTGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGRAATCACCAATCAACTTTCTATTCATTTTCAAATTCTCCATCATTTCTCTGGAGTATCACTTTCCGATGTCTCTTCTCAGCTATTCAAATTGGATAACAATGGCATTTGGGAGCCACGTGTCATTGATTCGAATCAAGTGATTCTATCGATTCAATCCAATTTCCACTGTCAAAAAGGATTCTATGGACCAATTTGTGAACGTCGTTCGAGAAGCACTTCTACTATTAAAACAACGACTTCTATTCCAACTGCCACGTCATCACCATTTCATCTTCCAATCAGTGAGGTCCAAATTAATAAGTAAGTTTTCAATTTCTTCTTCTTTAATCCAAATCTATAATAAATATTTTTCAGCCTAATCATCTATGCAGTTCTATCATCAGTGGTCCTTCTTCTAATCATTGCCAACTGTTTCCTGTGTTTCTGTCGTCCTAAACCATCCAAATACATTGATTACACATTCCAAAACGTCTTCCCAATGGATGAATTCTTCCCAATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAATATTCTGAAACTGTACGTC</pcr_primer_p1>
		<pcr_primer_p2>ATAGAATCCTTTTTGACAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAATATTCTGAAACTGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTCTATTCATTTTCAAATTCTCCATCATTTCTCTGGAGTATCACTTTCCGATGTCTCTTCTCAGCTATTCAAATTGGATAACAATGGCATTTGGGAGCCACGTGTCATTGATTCGAATCAAGTGATTCTATCGATTCAATCCAATTTCCACTGTCAAAAAGGATTCTAT</canonical_amplicon>
		<polymorphic_amplicon>GGAATATTCTGAAACTGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGRAATCACCAATCAACTTTCTATTCATTTTCAAATTCTCCATCATTTCTCTGGAGTATCACTTTCCGATGTCTCTTCTCAGCTATTCAAATTGGATAACAATGGCATTTGGGAGCCACGTGTCATTGATTCGAATCAAGTGATTCTATCGATTCAATCCAATTTCCACTGTCAAAAAGGATTCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27222</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>219954</contig_pos>
        <strand>+</strand>
        <context>ATTTCTCTGG[A/T]GTATCACTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCACCAATCAACTTTCTATTCATTTTCAAATTCTCCATCATTTCTCTGG</left_flank>
        <right_flank>GTATCACTTTCCGATGTCTCTTCTCAGCTATTCAAATTGGATAACAATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTAAAGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGTGTCCCTTCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGCACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGTATGCAATTCTCGATTGTTTACTTCCTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATCATGATTGTCTCGTTCATCTGGAGATTCAATCAATGGAATATTCTGAAACTGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTCTATTCATTTTCAAATTCTCCATCATTTCTCTGGAGTATCACTTTCCGATGTCTCTTCTCAGCTATTCAAATTGGATAACAATGGCATTTGGGAGCCACGTGTCATTGATTCGAATCAAGTGATTCTATCGATTCAATCCAATTTCCACTGTCAAAAAGGATTCTATGGACCAATTTGTGAACGTCGTTCGAGAAGCACTTCTACTATTAAAACAACGACTTCTATTCCAACTGCCACGTCATCACCATTTCATCTTCCAATCAGTGAGGTCCAAATTAATAAGTAAGTTTTCAATTTCTTCTTCTTTAATCCAAATCTATAATAAATATTTTTCAGCCTAATCATCTATGCAGTTCTATCATCAGTGGTCCTTCTTCTAATCATTGCCAACTGTTTCCTGTGTTTCTGTCGTCCTAAACCATCCAAATACATTGATTACACATTCCAAAACGTCTTCCCAATGGATGAATTCTTCCCAATGGAGAAAACCATCGGATCACCCGATACGGAATATTTTGACTCTTCCAGTAGATA</canonical>
            <polymorphic>CCTAAAGTATACAGAAAAACACAAAAATGATTACAAATGATTTCATATTGCAGTATACTGCTCATTATTCTAAAACCACAGTATACCGTGTCCCTTCAGATCCAACCGAAACAATGATGACTAATTCAAGTAAGTTCCTATATTGCACCATAAAAGATGATGATAATTGTCATATTGATGACAATTTGGAGCTCTTAGAAAATGGGCGGAGCTTAGGAATGGGTAGAGGTCCCTAGAAAGTACCCATTCATTATATCAGTATGCAATTCTCGATTGTTTACTTCCTTGTGTTTCTTATTCCATCTACTCAATCCACCGGATTTCTATCTCTCAAATTGACATCTGATCATGATTGTCTCGTTCATCTGGAGATTCAATCAATGGAATATTCTGAAACTGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTCTATTCATTTTCAAATTCTCCATCATTTCTCTGGWGTATCACTTTCCGATGTCTCTTCTCAGCTATTCAAATTGGATAACAATGGCATTTGGGAGCCACGTGTCATTGATTCGAATCAAGTGATTCTATCGATTCAATCCAATTTCCACTGTCAAAAAGGATTCTATGGACCAATTTGTGAACGTCGTTCGAGAAGCACTTCTACTATTAAAACAACGACTTCTATTCCAACTGCCACGTCATCACCATTTCATCTTCCAATCAGTGAGGTCCAAATTAATAAGTAAGTTTTCAATTTCTTCTTCTTTAATCCAAATCTATAATAAATATTTTTCAGCCTAATCATCTATGCAGTTCTATCATCAGTGGTCCTTCTTCTAATCATTGCCAACTGTTTCCTGTGTTTCTGTCGTCCTAAACCATCCAAATACATTGATTACACATTCCAAAACGTCTTCCCAATGGATGAATTCTTCCCAATGGAGAAAACCATCGGATCACCCGATACGGAATATTTTGACTCTTCCAGTAGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>345 269 159 130 79 18</canonical_bands>
                <polymorphic_bands>345 289 269 79 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAATATTCTGAAACTGTACGTC</pcr_primer_p1>
		<pcr_primer_p2>ATAGAATCCTTTTTGACAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAATATTCTGAAACTGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTCTATTCATTTTCAAATTCTCCATCATTTCTCTGGAGTATCACTTTCCGATGTCTCTTCTCAGCTATTCAAATTGGATAACAATGGCATTTGGGAGCCACGTGTCATTGATTCGAATCAAGTGATTCTATCGATTCAATCCAATTTCCACTGTCAAAAAGGATTCTAT</canonical_amplicon>
		<polymorphic_amplicon>GGAATATTCTGAAACTGTACGTCTTTTAGCATATGAAACGAAATCATTGGAAATATTTACACCAGAAATCACCAATCAACTTTCTATTCATTTTCAAATTCTCCATCATTTCTCTGGWGTATCACTTTCCGATGTCTCTTCTCAGCTATTCAAATTGGATAACAATGGCATTTGGGAGCCACGTGTCATTGATTCGAATCAAGTGATTCTATCGATTCAATCCAATTTCCACTGTCAAAAAGGATTCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27223</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>221007</contig_pos>
        <strand>+</strand>
        <context>TTGGAAATAG[G/T]GAACAAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATTGGCACCCATTTGACCGTTGAGTTTTGTAATTTCTTTTTGGAAATAG</left_flank>
        <right_flank>GAACAAAAATGAGTTTTTTTCATACATTTTCTGAAAAATCTGGAATTCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTAAATAATAATTTCAAATGATTCCTAATAAATTATCATTACTAACTAGTCAATAAAGATGTAACCAATTTAAAAATGTATATTTTTGACAATCAGCTTCACAACTCAAACAAATCAGATTCTTTATTCCCAACCAAAAAAAATTTCAAGTCAAGTTAGTGCCAATGGGAGGGTTTTTCAATATAATAACCCATTGACTCCGTACCGATGGGGAATGAAAGAATCGAAGGGGTTTATATAGGAGACACTTTCGAAGCGACCGACATTTCATGACAAATTTCACAATTTGTTTGCCAAACGAAAGGAAAAGAGAAACCAGTTATGAAATATTTCAGCATTAAAAAATGTCGGCTGCATGGAGAGTGTTTAGTATATAAACACTCTGAAAAATGAGTTCTTTCGGTGTCCGGTCCGGCGTTGATGGGTTATCAATTTCTGAACCCCTCCCATTGGCACCCATTTGACCGTTGAGTTTTGTAATTTCTTTTTGGAAATAGTGAACAAAAATGAGTTTTTTTCATACATTTTCTGAAAAATCTGGAATTCCCTATCTGAACCGGATTGAAACTGCAAAAAATCCGTCTGAACGGACCTAAAATCATTCCGAAAGGAGTCAAAAATAGCTTCGATAAGATAAATAGGATAGCTTTAATTTTGATTCTACTTTTGCCGGGAAAAAGTTTTTTTCGAATATTCTTTGGAATTTCCAAAGCTTCAATTTCAATTTTCAGCTGTTTACAGTGTCTTTATTTATTTATCCAGATTTCCAAGTTTAAGCCAGTGAGTTACCGTTTCTCTGTCACCCTTTGGCACCAACTTAAATGACGATTGTTTTTCCTTTTTAGAAAAACTCAACTTTGAAAATATTTCTACGGATCGCGCTTTATCAATCTTGTCTACCGTCTCCCCGGTTGTATTTTTTGTCACGATTTCTGGATCTACCGTATCTCAGGTTGCATCCAAAACTGATGGGGTGATTTCCTCTTCAACGAACTCAT</canonical>
            <polymorphic>TTTTAAATAATAATTTCAAATGATTCCTAATAAATTATCATTACTAACTAGTCAATAAAGATGTAACCAATTTAAAAATGTATATTTTTGACAATCAGCTTCACAACTCAAACAAATCAGATTCTTTATTCCCAACCAAAAAAAATTTCAAGTCAAGTTAGTGCCAATGGGAGGGTTTTTCAATATAATAACCCATTGACTCCGTACCGATGGGGAATGAAAGAATCGAAGGGGTTTATATAGGAGACACTTTCGAAGCGACCGACATTTCATGACAAATTTCACAATTTGTTTGCCAAACGAAAGGAAAAGAGAAACCAGTTATGAAATATTTCAGCATTAAAAAATGTCGGCTGCATGGAGAGTGTTTAGTATATAAACACTCTGAAAAATGAGTTCTTTCGGTGTCCGGTCCGGCGTTGATGGGTTATCAATTTCTGAACCCCTCCCATTGGCACCCATTTGACCGTTGAGTTTTGTAATTTCTTTTTGGAAATAGKGAACAAAAATGAGTTTTTTTCATACATTTTCTGAAAAATCTGGAATTCCCTATCTGAACCGGATTGAAACTGCAAAAAATCCGTCTGAACGGACCTAAAATCATTCCGAAAGGAGTCAAAAATAGCTTCGATAAGATAAATAGGATAGCTTTAATTTTGATTCTACTTTTGCCGGGAAAAAGTTTTTTTCGAATATTCTTTGGAATTTCCAAAGCTTCAATTTCAATTTTCAGCTGTTTACAGTGTCTTTATTTATTTATCCAGATTTCCAAGTTTAAGCCAGTGAGTTACCGTTTCTCTGTCACCCTTTGGCACCAACTTAAATGACGATTGTTTTTCCTTTTTAGAAAAACTCAACTTTGAAAATATTTCTACGGATCGCGCTTTATCAATCTTGTCTACCGTCTCCCCGGTTGTATTTTTTGTCACGATTTCTGGATCTACCGTATCTCAGGTTGCATCCAAAACTGATGGGGTGATTTCCTCTTCAACGAACTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>244 114 103 86 83 60 50 50 44 40 35 25 22 19 15 10</canonical_bands>
                <polymorphic_bands>288 114 103 86 83 60 50 50 40 35 25 22 19 15 10</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 237 161 101</canonical_bands>
                <polymorphic_bands>738 161 101</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGAAAAGAGAAACCAGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>GATAGGGAATTCCAGATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGAAAAGAGAAACCAGTTATGAAATATTTCAGCATTAAAAAATGTCGGCTGCATGGAGAGTGTTTAGTATATAAACACTCTGAAAAATGAGTTCTTTCGGTGTCCGGTCCGGCGTTGATGGGTTATCAATTTCTGAACCCCTCCCATTGGCACCCATTTGACCGTTGAGTTTTGTAATTTCTTTTTGGAAATAGTGAACAAAAATGAGTTTTTTTCATACATTTTCTGAAAAATCTGGAATTCCCTATC</canonical_amplicon>
		<polymorphic_amplicon>AGGAAAAGAGAAACCAGTTATGAAATATTTCAGCATTAAAAAATGTCGGCTGCATGGAGAGTGTTTAGTATATAAACACTCTGAAAAATGAGTTCTTTCGGTGTCCGGTCCGGCGTTGATGGGTTATCAATTTCTGAACCCCTCCCATTGGCACCCATTTGACCGTTGAGTTTTGTAATTTCTTTTTGGAAATAGKGAACAAAAATGAGTTTTTTTCATACATTTTCTGAAAAATCTGGAATTCCCTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27224</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>222592</contig_pos>
        <strand>-</strand>
        <context>ATAGAAATCC[C/T]GTGGATTGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGATGAACGAGACAATCATGATCAGATGTCAATTTGAGAGATAGAAATCC</left_flank>
        <right_flank>GTGGATTGAGTAGATGGAATAAGAAACACAAGGAAGTAAACAATCGAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATAGATGATTAGGCTGAAAAATATTTGTTATAGATTTGGATTAAAGAAGAAGAAATTGAAAACTTACTTATTAATTTGGACCTCACTGATTGGAAGATGAAATGGTGATGACGTGGCAGTTGGAATAGAAGTCGTTGTTTTAATAGTAGAAGTGCTTCTCGAACGACGTTCACAAATTGGTCCATAGAATCCTTTTTGACAGTGGAAATTGGATTGAATCGATAGAATCACTTGATCCGAATCAATGACACGTGGCTCCCAAATGCCATTGTTATCCAATTTGAATAGCTGAGAAGAGACATCGGAAAGTGATACTCCAGAGAAATGATGGAGAATTTGAAAATGAATAGAAAGTTGATTGGTGATTTCTGGTGTAAATATTTCCAATGATTTCGTTTCATATGCTAAAAGACGTACAGTTTCAGAATATTCCATTGATTGAATCTCCAGATGAACGAGACAATCATGATCAGATGTCAATTTGAGAGATAGAAATCCGGTGGATTGAGTAGATGGAATAAGAAACACAAGGAAGTAAACAATCGAGAATTGCATACTGATAATATGAATGGGTACTTTCTAGGGACCTCTTCTCTCCTTATATACCCATTTCTAAGCTCCGCCCACTTTCTAAGAGCTCCAAATTGTCATAACATGATAATTGTCATCTTTTTTATTGTCATTTGGAAAGTATACCCGAGTTAGTCATCATTTTTAGGTGGGATCTTAAGAGATACAGTATACTGGAATACTGTACACAAAGAGTAATATAAAATGTTTTATAATATTTTTGTAGTATTCTGTATACTGTAAGTAAAGAGAAAGTAACTAGGGGTACAGTAATACGGGTGCTGAAATACAAGAAATTCAAAGTTTTTGAGAATGCGGACAGTTGAAGCCCTTTTTTCACTTTTTAGCTCTTCAGCCGAGATTTAGAAATTTGGGAGAGATATCTGAAAAAAAGAAAACTGGAACTTTCTGAACTAACTAGGCAATACA</canonical>
            <polymorphic>CATAGATGATTAGGCTGAAAAATATTTGTTATAGATTTGGATTAAAGAAGAAGAAATTGAAAACTTACTTATTAATTTGGACCTCACTGATTGGAAGATGAAATGGTGATGACGTGGCAGTTGGAATAGAAGTCGTTGTTTTAATAGTAGAAGTGCTTCTCGAACGACGTTCACAAATTGGTCCATAGAATCCTTTTTGACAGTGGAAATTGGATTGAATCGATAGAATCACTTGATCCGAATCAATGACACGTGGCTCCCAAATGCCATTGTTATCCAATTTGAATAGCTGAGAAGAGACATCGGAAAGTGATACTCCAGAGAAATGATGGAGAATTTGAAAATGAATAGAAAGTTGATTGGTGATTTCTGGTGTAAATATTTCCAATGATTTCGTTTCATATGCTAAAAGACGTACAGTTTCAGAATATTCCATTGATTGAATCTCCAGATGAACGAGACAATCATGATCAGATGTCAATTTGAGAGATAGAAATCCYGTGGATTGAGTAGATGGAATAAGAAACACAAGGAAGTAAACAATCGAGAATTGCATACTGATAATATGAATGGGTACTTTCTAGGGACCTCTTCTCTCCTTATATACCCATTTCTAAGCTCCGCCCACTTTCTAAGAGCTCCAAATTGTCATAACATGATAATTGTCATCTTTTTTATTGTCATTTGGAAAGTATACCCGAGTTAGTCATCATTTTTAGGTGGGATCTTAAGAGATACAGTATACTGGAATACTGTACACAAAGAGTAATATAAAATGTTTTATAATATTTTTGTAGTATTCTGTATACTGTAAGTAAAGAGAAAGTAACTAGGGGTACAGTAATACGGGTGCTGAAATACAAGAAATTCAAAGTTTTTGAGAATGCGGACAGTTGAAGCCCTTTTTTCACTTTTTAGCTCTTCAGCCGAGATTTAGAAATTTGGGAGAGATATCTGAAAAAAAGAAAACTGGAACTTTCTGAACTAACTAGGCAATACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGGTGATTTCTGGTGTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGGGTATATAAGGAGAGAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTGGTGATTTCTGGTGTAAATATTTCCAATGATTTCGTTTCATATGCTAAAAGACGTACAGTTTCAGAATATTCCATTGATTGAATCTCCAGATGAACGAGACAATCATGATCAGATGTCAATTTGAGAGATAGAAATCCGGTGGATTGAGTAGATGGAATAAGAAACACAAGGAAGTAAACAATCGAGAATTGCATACTGATAATATGAATGGGTACTTTCTAGGGACCTCTTCTCTCCTTATATACCCA</canonical_amplicon>
		<polymorphic_amplicon>ATTGGTGATTTCTGGTGTAAATATTTCCAATGATTTCGTTTCATATGCTAAAAGACGTACAGTTTCAGAATATTCCATTGATTGAATCTCCAGATGAACGAGACAATCATGATCAGATGTCAATTTGAGAGATAGAAATCCYGTGGATTGAGTAGATGGAATAAGAAACACAAGGAAGTAAACAATCGAGAATTGCATACTGATAATATGAATGGGTACTTTCTAGGGACCTCTTCTCTCCTTATATACCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27225</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>222642</contig_pos>
        <strand>-</strand>
        <context>ACAATCGAGA[C/T]TTMCATWCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTGGATTGAGTAGATGGAATAAGAAACACAAGGAAGTAAACAATCGAGA</left_flank>
        <right_flank>TTGCATACTGATAATATGAATGGGTACTTTCTAGGGACCTCTTCTCTCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAAATTGAAAACTTACTTATTAATTTGGACCTCACTGATTGGAAGATGAAATGGTGATGACGTGGCAGTTGGAATAGAAGTCGTTGTTTTAATAGTAGAAGTGCTTCTCGAACGACGTTCACAAATTGGTCCATAGAATCCTTTTTGACAGTGGAAATTGGATTGAATCGATAGAATCACTTGATCCGAATCAATGACACGTGGCTCCCAAATGCCATTGTTATCCAATTTGAATAGCTGAGAAGAGACATCGGAAAGTGATACTCCAGAGAAATGATGGAGAATTTGAAAATGAATAGAAAGTTGATTGGTGATTTCTGGTGTAAATATTTCCAATGATTTCGTTTCATATGCTAAAAGACGTACAGTTTCAGAATATTCCATTGATTGAATCTCCAGATGAACGAGACAATCATGATCAGATGTCAATTTGAGAGATAGAAATCCGGTGGATTGAGTAGATGGAATAAGAAACACAAGGAAGTAAACAATCGAGAATTGCATACTGATAATATGAATGGGTACTTTCTAGGGACCTCTTCTCTCCTTATATACCCATTTCTAAGCTCCGCCCACTTTCTAAGAGCTCCAAATTGTCATAACATGATAATTGTCATCTTTTTTATTGTCATTTGGAAAGTATACCCGAGTTAGTCATCATTTTTAGGTGGGATCTTAAGAGATACAGTATACTGGAATACTGTACACAAAGAGTAATATAAAATGTTTTATAATATTTTTGTAGTATTCTGTATACTGTAAGTAAAGAGAAAGTAACTAGGGGTACAGTAATACGGGTGCTGAAATACAAGAAATTCAAAGTTTTTGAGAATGCGGACAGTTGAAGCCCTTTTTTCACTTTTTAGCTCTTCAGCCGAGATTTAGAAATTTGGGAGAGATATCTGAAAAAAAGAAAACTGGAACTTTCTGAACTAACTAGGCAATACAGACACACACAAACAGAAATTTAATTCTCTTACTTCGAAAATCCAAAACCA</canonical>
            <polymorphic>AAGAAATTGAAAACTTACTTATTAATTTGGACCTCACTGATTGGAAGATGAAATGGTGATGACGTGGCAGTTGGAATAGAAGTCGTTGTTTTAATAGTAGAAGTGCTTCTCGAACGACGTTCACAAATTGGTCCATAGAATCCTTTTTGACAGTGGAAATTGGATTGAATCGATAGAATCACTTGATCCGAATCAATGACACGTGGCTCCCAAATGCCATTGTTATCCAATTTGAATAGCTGAGAAGAGACATCGGAAAGTGATACTCCAGAGAAATGATGGAGAATTTGAAAATGAATAGAAAGTTGATTGGTGATTTCTGGTGTAAATATTTCCAATGATTTCGTTTCATATGCTAAAAGACGTACAGTTTCAGAATATTCCATTGATTGAATCTCCAGATGAACGAGACAATCATGATCAGATGTCAATTTGAGAGATAGAAATCCGGTGGATTGAGTAGATGGAATAAGAAACACAAGGAAGTAAACAATCGAGAYTTGCATACTGATAATATGAATGGGTACTTTCTAGGGACCTCTTCTCTCCTTATATACCCATTTCTAAGCTCCGCCCACTTTCTAAGAGCTCCAAATTGTCATAACATGATAATTGTCATCTTTTTTATTGTCATTTGGAAAGTATACCCGAGTTAGTCATCATTTTTAGGTGGGATCTTAAGAGATACAGTATACTGGAATACTGTACACAAAGAGTAATATAAAATGTTTTATAATATTTTTGTAGTATTCTGTATACTGTAAGTAAAGAGAAAGTAACTAGGGGTACAGTAATACGGGTGCTGAAATACAAGAAATTCAAAGTTTTTGAGAATGCGGACAGTTGAAGCCCTTTTTTCACTTTTTAGCTCTTCAGCCGAGATTTAGAAATTTGGGAGAGATATCTGAAAAAAAGAAAACTGGAACTTTCTGAACTAACTAGGCAATACAGACACACACAAACAGAAATTTAATTCTCTTACTTCGAAAATCCAAAACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>205 145 102 95 78 73 71 69 56 32 29 19 17 5 4</canonical_bands>
                <polymorphic_bands>205 164 145 102 78 73 71 56 32 29 19 17 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGGTGATTTCTGGTGTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGGGTATATAAGGAGAGAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTGGTGATTTCTGGTGTAAATATTTCCAATGATTTCGTTTCATATGCTAAAAGACGTACAGTTTCAGAATATTCCATTGATTGAATCTCCAGATGAACGAGACAATCATGATCAGATGTCAATTTGAGAGATAGAAATCCGGTGGATTGAGTAGATGGAATAAGAAACACAAGGAAGTAAACAATCGAGAATTGCATACTGATAATATGAATGGGTACTTTCTAGGGACCTCTTCTCTCCTTATATACCCA</canonical_amplicon>
		<polymorphic_amplicon>ATTGGTGATTTCTGGTGTAAATATTTCCAATGATTTCGTTTCATATGCTAAAAGACGTACAGTTTCAGAATATTCCATTGATTGAATCTCCAGATGAACGAGACAATCATGATCAGATGTCAATTTGAGAGATAGAAATCCGGTGGATTGAGTAGATGGAATAAGAAACACAAGGAAGTAAACAATCGAGAYTTGCATACTGATAATATGAATGGGTACTTTCTAGGGACCTCTTCTCTCCTTATATACCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27226</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>222645</contig_pos>
        <strand>-</strand>
        <context>ATCGAGAYTT[A/C]CATWCTGATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGATTGAGTAGATGGAATAAGAAACACAAGGAAGTAAACAATCGAGAATT</left_flank>
        <right_flank>CATACTGATAATATGAATGGGTACTTTCTAGGGACCTCTTCTCTCCTTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTGAAAACTTACTTATTAATTTGGACCTCACTGATTGGAAGATGAAATGGTGATGACGTGGCAGTTGGAATAGAAGTCGTTGTTTTAATAGTAGAAGTGCTTCTCGAACGACGTTCACAAATTGGTCCATAGAATCCTTTTTGACAGTGGAAATTGGATTGAATCGATAGAATCACTTGATCCGAATCAATGACACGTGGCTCCCAAATGCCATTGTTATCCAATTTGAATAGCTGAGAAGAGACATCGGAAAGTGATACTCCAGAGAAATGATGGAGAATTTGAAAATGAATAGAAAGTTGATTGGTGATTTCTGGTGTAAATATTTCCAATGATTTCGTTTCATATGCTAAAAGACGTACAGTTTCAGAATATTCCATTGATTGAATCTCCAGATGAACGAGACAATCATGATCAGATGTCAATTTGAGAGATAGAAATCCGGTGGATTGAGTAGATGGAATAAGAAACACAAGGAAGTAAACAATCGAGAATTGCATACTGATAATATGAATGGGTACTTTCTAGGGACCTCTTCTCTCCTTATATACCCATTTCTAAGCTCCGCCCACTTTCTAAGAGCTCCAAATTGTCATAACATGATAATTGTCATCTTTTTTATTGTCATTTGGAAAGTATACCCGAGTTAGTCATCATTTTTAGGTGGGATCTTAAGAGATACAGTATACTGGAATACTGTACACAAAGAGTAATATAAAATGTTTTATAATATTTTTGTAGTATTCTGTATACTGTAAGTAAAGAGAAAGTAACTAGGGGTACAGTAATACGGGTGCTGAAATACAAGAAATTCAAAGTTTTTGAGAATGCGGACAGTTGAAGCCCTTTTTTCACTTTTTAGCTCTTCAGCCGAGATTTAGAAATTTGGGAGAGATATCTGAAAAAAAGAAAACTGGAACTTTCTGAACTAACTAGGCAATACAGACACACACAAACAGAAATTTAATTCTCTTACTTCGAAAATCCAAAACCAACG</canonical>
            <polymorphic>AAATTGAAAACTTACTTATTAATTTGGACCTCACTGATTGGAAGATGAAATGGTGATGACGTGGCAGTTGGAATAGAAGTCGTTGTTTTAATAGTAGAAGTGCTTCTCGAACGACGTTCACAAATTGGTCCATAGAATCCTTTTTGACAGTGGAAATTGGATTGAATCGATAGAATCACTTGATCCGAATCAATGACACGTGGCTCCCAAATGCCATTGTTATCCAATTTGAATAGCTGAGAAGAGACATCGGAAAGTGATACTCCAGAGAAATGATGGAGAATTTGAAAATGAATAGAAAGTTGATTGGTGATTTCTGGTGTAAATATTTCCAATGATTTCGTTTCATATGCTAAAAGACGTACAGTTTCAGAATATTCCATTGATTGAATCTCCAGATGAACGAGACAATCATGATCAGATGTCAATTTGAGAGATAGAAATCCGGTGGATTGAGTAGATGGAATAAGAAACACAAGGAAGTAAACAATCGAGAATTMCATACTGATAATATGAATGGGTACTTTCTAGGGACCTCTTCTCTCCTTATATACCCATTTCTAAGCTCCGCCCACTTTCTAAGAGCTCCAAATTGTCATAACATGATAATTGTCATCTTTTTTATTGTCATTTGGAAAGTATACCCGAGTTAGTCATCATTTTTAGGTGGGATCTTAAGAGATACAGTATACTGGAATACTGTACACAAAGAGTAATATAAAATGTTTTATAATATTTTTGTAGTATTCTGTATACTGTAAGTAAAGAGAAAGTAACTAGGGGTACAGTAATACGGGTGCTGAAATACAAGAAATTCAAAGTTTTTGAGAATGCGGACAGTTGAAGCCCTTTTTTCACTTTTTAGCTCTTCAGCCGAGATTTAGAAATTTGGGAGAGATATCTGAAAAAAAGAAAACTGGAACTTTCTGAACTAACTAGGCAATACAGACACACACAAACAGAAATTTAATTCTCTTACTTCGAAAATCCAAAACCAACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGGTGATTTCTGGTGTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGGGTATATAAGGAGAGAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTGGTGATTTCTGGTGTAAATATTTCCAATGATTTCGTTTCATATGCTAAAAGACGTACAGTTTCAGAATATTCCATTGATTGAATCTCCAGATGAACGAGACAATCATGATCAGATGTCAATTTGAGAGATAGAAATCCGGTGGATTGAGTAGATGGAATAAGAAACACAAGGAAGTAAACAATCGAGAATTGCATACTGATAATATGAATGGGTACTTTCTAGGGACCTCTTCTCTCCTTATATACCCA</canonical_amplicon>
		<polymorphic_amplicon>ATTGGTGATTTCTGGTGTAAATATTTCCAATGATTTCGTTTCATATGCTAAAAGACGTACAGTTTCAGAATATTCCATTGATTGAATCTCCAGATGAACGAGACAATCATGATCAGATGTCAATTTGAGAGATAGAAATCCGGTGGATTGAGTAGATGGAATAAGAAACACAAGGAAGTAAACAATCGAGAATTMCATACTGATAATATGAATGGGTACTTTCTAGGGACCTCTTCTCTCCTTATATACCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27227</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>222649</contig_pos>
        <strand>-</strand>
        <context>AGAYTTMCAT[A/T]CTGATAATAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAGTAGATGGAATAAGAAACACAAGGAAGTAAACAATCGAGAATTGCAT</left_flank>
        <right_flank>CTGATAATATGAATGGGTACTTTCTAGGGACCTCTTCTCTCCTTATATAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAACTTACTTATTAATTTGGACCTCACTGATTGGAAGATGAAATGGTGATGACGTGGCAGTTGGAATAGAAGTCGTTGTTTTAATAGTAGAAGTGCTTCTCGAACGACGTTCACAAATTGGTCCATAGAATCCTTTTTGACAGTGGAAATTGGATTGAATCGATAGAATCACTTGATCCGAATCAATGACACGTGGCTCCCAAATGCCATTGTTATCCAATTTGAATAGCTGAGAAGAGACATCGGAAAGTGATACTCCAGAGAAATGATGGAGAATTTGAAAATGAATAGAAAGTTGATTGGTGATTTCTGGTGTAAATATTTCCAATGATTTCGTTTCATATGCTAAAAGACGTACAGTTTCAGAATATTCCATTGATTGAATCTCCAGATGAACGAGACAATCATGATCAGATGTCAATTTGAGAGATAGAAATCCGGTGGATTGAGTAGATGGAATAAGAAACACAAGGAAGTAAACAATCGAGAATTGCATACTGATAATATGAATGGGTACTTTCTAGGGACCTCTTCTCTCCTTATATACCCATTTCTAAGCTCCGCCCACTTTCTAAGAGCTCCAAATTGTCATAACATGATAATTGTCATCTTTTTTATTGTCATTTGGAAAGTATACCCGAGTTAGTCATCATTTTTAGGTGGGATCTTAAGAGATACAGTATACTGGAATACTGTACACAAAGAGTAATATAAAATGTTTTATAATATTTTTGTAGTATTCTGTATACTGTAAGTAAAGAGAAAGTAACTAGGGGTACAGTAATACGGGTGCTGAAATACAAGAAATTCAAAGTTTTTGAGAATGCGGACAGTTGAAGCCCTTTTTTCACTTTTTAGCTCTTCAGCCGAGATTTAGAAATTTGGGAGAGATATCTGAAAAAAAGAAAACTGGAACTTTCTGAACTAACTAGGCAATACAGACACACACAAACAGAAATTTAATTCTCTTACTTCGAAAATCCAAAACCAACGGTCA</canonical>
            <polymorphic>TGAAAACTTACTTATTAATTTGGACCTCACTGATTGGAAGATGAAATGGTGATGACGTGGCAGTTGGAATAGAAGTCGTTGTTTTAATAGTAGAAGTGCTTCTCGAACGACGTTCACAAATTGGTCCATAGAATCCTTTTTGACAGTGGAAATTGGATTGAATCGATAGAATCACTTGATCCGAATCAATGACACGTGGCTCCCAAATGCCATTGTTATCCAATTTGAATAGCTGAGAAGAGACATCGGAAAGTGATACTCCAGAGAAATGATGGAGAATTTGAAAATGAATAGAAAGTTGATTGGTGATTTCTGGTGTAAATATTTCCAATGATTTCGTTTCATATGCTAAAAGACGTACAGTTTCAGAATATTCCATTGATTGAATCTCCAGATGAACGAGACAATCATGATCAGATGTCAATTTGAGAGATAGAAATCCGGTGGATTGAGTAGATGGAATAAGAAACACAAGGAAGTAAACAATCGAGAATTGCATWCTGATAATATGAATGGGTACTTTCTAGGGACCTCTTCTCTCCTTATATACCCATTTCTAAGCTCCGCCCACTTTCTAAGAGCTCCAAATTGTCATAACATGATAATTGTCATCTTTTTTATTGTCATTTGGAAAGTATACCCGAGTTAGTCATCATTTTTAGGTGGGATCTTAAGAGATACAGTATACTGGAATACTGTACACAAAGAGTAATATAAAATGTTTTATAATATTTTTGTAGTATTCTGTATACTGTAAGTAAAGAGAAAGTAACTAGGGGTACAGTAATACGGGTGCTGAAATACAAGAAATTCAAAGTTTTTGAGAATGCGGACAGTTGAAGCCCTTTTTTCACTTTTTAGCTCTTCAGCCGAGATTTAGAAATTTGGGAGAGATATCTGAAAAAAAGAAAACTGGAACTTTCTGAACTAACTAGGCAATACAGACACACACAAACAGAAATTTAATTCTCTTACTTCGAAAATCCAAAACCAACGGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGCTAAAAGACGTACAGTTTCA</pcr_primer_p1>
		<pcr_primer_p2>ACAATTTGGAGCTCTTAGAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATGCTAAAAGACGTACAGTTTCAGAATATTCCATTGATTGAATCTCCAGATGAACGAGACAATCATGATCAGATGTCAATTTGAGAGATAGAAATCCGGTGGATTGAGTAGATGGAATAAGAAACACAAGGAAGTAAACAATCGAGAATTGCATACTGATAATATGAATGGGTACTTTCTAGGGACCTCTTCTCTCCTTATATACCCATTTCTAAGCTCCGCCCACTTTCTAAGAGCTCCAAATTGT</canonical_amplicon>
		<polymorphic_amplicon>ATGCTAAAAGACGTACAGTTTCAGAATATTCCATTGATTGAATCTCCAGATGAACGAGACAATCATGATCAGATGTCAATTTGAGAGATAGAAATCCGGTGGATTGAGTAGATGGAATAAGAAACACAAGGAAGTAAACAATCGAGAATTGCATWCTGATAATATGAATGGGTACTTTCTAGGGACCTCTTCTCTCCTTATATACCCATTTCTAAGCTCCGCCCACTTTCTAAGAGCTCCAAATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27228</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>222666</contig_pos>
        <strand>-</strand>
        <context>ATATGAATGG[A/C]TACTTTCTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAACACAAGGAAGTAAACAATCGAGAATTGCATACTGATAATATGAATGG</left_flank>
        <right_flank>TACTTTCTAGGGACCTCTTCTCTCCTTATATACCCATTTCTAAGCTCCGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTGGACCTCACTGATTGGAAGATGAAATGGTGATGACGTGGCAGTTGGAATAGAAGTCGTTGTTTTAATAGTAGAAGTGCTTCTCGAACGACGTTCACAAATTGGTCCATAGAATCCTTTTTGACAGTGGAAATTGGATTGAATCGATAGAATCACTTGATCCGAATCAATGACACGTGGCTCCCAAATGCCATTGTTATCCAATTTGAATAGCTGAGAAGAGACATCGGAAAGTGATACTCCAGAGAAATGATGGAGAATTTGAAAATGAATAGAAAGTTGATTGGTGATTTCTGGTGTAAATATTTCCAATGATTTCGTTTCATATGCTAAAAGACGTACAGTTTCAGAATATTCCATTGATTGAATCTCCAGATGAACGAGACAATCATGATCAGATGTCAATTTGAGAGATAGAAATCCGGTGGATTGAGTAGATGGAATAAGAAACACAAGGAAGTAAACAATCGAGAATTGCATACTGATAATATGAATGGGTACTTTCTAGGGACCTCTTCTCTCCTTATATACCCATTTCTAAGCTCCGCCCACTTTCTAAGAGCTCCAAATTGTCATAACATGATAATTGTCATCTTTTTTATTGTCATTTGGAAAGTATACCCGAGTTAGTCATCATTTTTAGGTGGGATCTTAAGAGATACAGTATACTGGAATACTGTACACAAAGAGTAATATAAAATGTTTTATAATATTTTTGTAGTATTCTGTATACTGTAAGTAAAGAGAAAGTAACTAGGGGTACAGTAATACGGGTGCTGAAATACAAGAAATTCAAAGTTTTTGAGAATGCGGACAGTTGAAGCCCTTTTTTCACTTTTTAGCTCTTCAGCCGAGATTTAGAAATTTGGGAGAGATATCTGAAAAAAAGAAAACTGGAACTTTCTGAACTAACTAGGCAATACAGACACACACAAACAGAAATTTAATTCTCTTACTTCGAAAATCCAAAACCAACGGTCAAGTTAGCACCAGTGGGG</canonical>
            <polymorphic>ATTTGGACCTCACTGATTGGAAGATGAAATGGTGATGACGTGGCAGTTGGAATAGAAGTCGTTGTTTTAATAGTAGAAGTGCTTCTCGAACGACGTTCACAAATTGGTCCATAGAATCCTTTTTGACAGTGGAAATTGGATTGAATCGATAGAATCACTTGATCCGAATCAATGACACGTGGCTCCCAAATGCCATTGTTATCCAATTTGAATAGCTGAGAAGAGACATCGGAAAGTGATACTCCAGAGAAATGATGGAGAATTTGAAAATGAATAGAAAGTTGATTGGTGATTTCTGGTGTAAATATTTCCAATGATTTCGTTTCATATGCTAAAAGACGTACAGTTTCAGAATATTCCATTGATTGAATCTCCAGATGAACGAGACAATCATGATCAGATGTCAATTTGAGAGATAGAAATCCGGTGGATTGAGTAGATGGAATAAGAAACACAAGGAAGTAAACAATCGAGAATTGCATACTGATAATATGAATGGMTACTTTCTAGGGACCTCTTCTCTCCTTATATACCCATTTCTAAGCTCCGCCCACTTTCTAAGAGCTCCAAATTGTCATAACATGATAATTGTCATCTTTTTTATTGTCATTTGGAAAGTATACCCGAGTTAGTCATCATTTTTAGGTGGGATCTTAAGAGATACAGTATACTGGAATACTGTACACAAAGAGTAATATAAAATGTTTTATAATATTTTTGTAGTATTCTGTATACTGTAAGTAAAGAGAAAGTAACTAGGGGTACAGTAATACGGGTGCTGAAATACAAGAAATTCAAAGTTTTTGAGAATGCGGACAGTTGAAGCCCTTTTTTCACTTTTTAGCTCTTCAGCCGAGATTTAGAAATTTGGGAGAGATATCTGAAAAAAAGAAAACTGGAACTTTCTGAACTAACTAGGCAATACAGACACACACAAACAGAAATTTAATTCTCTTACTTCGAAAATCCAAAACCAACGGTCAAGTTAGCACCAGTGGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>342 237 181 159 81</canonical_bands>
                <polymorphic_bands>342 340 237 81</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGCTAAAAGACGTACAGTTTCA</pcr_primer_p1>
		<pcr_primer_p2>ACAATTTGGAGCTCTTAGAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATGCTAAAAGACGTACAGTTTCAGAATATTCCATTGATTGAATCTCCAGATGAACGAGACAATCATGATCAGATGTCAATTTGAGAGATAGAAATCCGGTGGATTGAGTAGATGGAATAAGAAACACAAGGAAGTAAACAATCGAGAATTGCATACTGATAATATGAATGGGTACTTTCTAGGGACCTCTTCTCTCCTTATATACCCATTTCTAAGCTCCGCCCACTTTCTAAGAGCTCCAAATTGT</canonical_amplicon>
		<polymorphic_amplicon>ATGCTAAAAGACGTACAGTTTCAGAATATTCCATTGATTGAATCTCCAGATGAACGAGACAATCATGATCAGATGTCAATTTGAGAGATAGAAATCCGGTGGATTGAGTAGATGGAATAAGAAACACAAGGAAGTAAACAATCGAGAATTGCATACTGATAATATGAATGGMTACTTTCTAGGGACCTCTTCTCTCCTTATATACCCATTTCTAAGCTCCGCCCACTTTCTAAGAGCTCCAAATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27229</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>251705</contig_pos>
        <strand>+</strand>
        <context>TTCAGAGATC[A/T]CTAGACGCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCACTTCTTCTTCTTCTTCTTCAAATATATTCCCGGACGTTCAGAGATC</left_flank>
        <right_flank>CTAGACGCAGATATCCAAAGAGACTTCTATTCTCAGTGTTTCGAGAGACG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGACGGCGGTAGGGCCCCGGCGGCGGATAAAAATGAAGAAGAAGAAGACCTTGTGTGTGTAGACGCAGTGCCGTGGCTTATGATATTGTAGAGAGACGAAGAGAGAAACAGAGAAAAAGTTAGATGTTACATGAGAGAGAGAGAGAAAGCAGTGTCCGGAGCACAGCAACAAGGCCCCCCAACCGCCAATTTGTTCGTTTCTCTGTCTGCGTCTCTCCATCTATATCCTTCCTTTTGCGCAACTACGCGCCCCCCGGAGCACTATTTGTCGTTGTCACACTACTCAGTCAGGCCCCTTTCCTTCTTCTTCTTCTTCTTCGTCTATCTCTCGTCGTCTACCCTCTCTATCTCCACATCTCCTATTTCTTCTTCACTTTTCTACTCCATCCATTCGTTTTGTGCTGAATGGTGTGGAAGCACGCGGGGGTCCCTTTCTCCTCCCCTTTTCGACCACTTCTTCTTCTTCTTCTTCAAATATATTCCCGGACGTTCAGAGATCTCTAGACGCAGATATCCAAAGAGACTTCTATTCTCAGTGTTTCGAGAGACGCAGGCTTCTATTTCTACCTACACCTGTTCTTTATAGTGGGACCATAGTAATTAGAATCTTATGGGGGCTAGCAGATGTCAAAATTCCACTTACCGCTATCGCCAAATGGGGTTCACAATATCCACAATACTTCACATTCCTACTAACGGCTCCCTCTTCACACAGCAGTCCTTGTCGTTGTGCACATGTGACGTGGAAGCTTTTCTTGCATTTGTGAATATTACATGTCATACATGCCCCTTTTTTAGCATCATTAGGTCGATCGGCTTCTTTACAAATGTAGCAGACTTTTTGGAATCTGCAAATTCGCAAATATTTAAAACGTTCCATCTCAAAAAAAAAAGAAAAATAACTCACTTATCAAGAGGCACATCGGACAATATCACTGGTTCCATACTATGAACATTTCCAAATCTGACTTCTGGGATATACAATGCACATATCACATGA</canonical>
            <polymorphic>GGACGGCGGTAGGGCCCCGGCGGCGGATAAAAATGAAGAAGAAGAAGACCTTGTGTGTGTAGACGCAGTGCCGTGGCTTATGATATTGTAGAGAGACGAAGAGAGAAACAGAGAAAAAGTTAGATGTTACATGAGAGAGAGAGAGAAAGCAGTGTCCGGAGCACAGCAACAAGGCCCCCCAACCGCCAATTTGTTCGTTTCTCTGTCTGCGTCTCTCCATCTATATCCTTCCTTTTGCGCAACTACGCGCCCCCCGGAGCACTATTTGTCGTTGTCACACTACTCAGTCAGGCCCCTTTCCTTCTTCTTCTTCTTCTTCGTCTATCTCTCGTCGTCTACCCTCTCTATCTCCACATCTCCTATTTCTTCTTCACTTTTCTACTCCATCCATTCGTTTTGTGCTGAATGGTGTGGAAGCACGCGGGGGTCCCTTTCTCCTCCCCTTTTCGACCACTTCTTCTTCTTCTTCTTCAAATATATTCCCGGACGTTCAGAGATCWCTAGACGCAGATATCCAAAGAGACTTCTATTCTCAGTGTTTCGAGAGACGCAGGCTTCTATTTCTACCTACACCTGTTCTTTATAGTGGGACCATAGTAATTAGAATCTTATGGGGGCTAGCAGATGTCAAAATTCCACTTACCGCTATCGCCAAATGGGGTTCACAATATCCACAATACTTCACATTCCTACTAACGGCTCCCTCTTCACACAGCAGTCCTTGTCGTTGTGCACATGTGACGTGGAAGCTTTTCTTGCATTTGTGAATATTACATGTCATACATGCCCCTTTTTTAGCATCATTAGGTCGATCGGCTTCTTTACAAATGTAGCAGACTTTTTGGAATCTGCAAATTCGCAAATATTTAAAACGTTCCATCTCAAAAAAAAAAGAAAAATAACTCACTTATCAAGAGGCACATCGGACAATATCACTGGTTCCATACTATGAACATTTCCAAATCTGACTTCTGGGATATACAATGCACATATCACATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>370 345 156 88 41</canonical_bands>
                <polymorphic_bands>386 370 156 88</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTTCGACCACTTCTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>AGGAATGTGAAGTATTGTGGATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTTTCGACCACTTCTTCTTCTTCTTCTTCAAATATATTCCCGGACGTTCAGAGATCTCTAGACGCAGATATCCAAAGAGACTTCTATTCTCAGTGTTTCGAGAGACGCAGGCTTCTATTTCTACCTACACCTGTTCTTTATAGTGGGACCATAGTAATTAGAATCTTATGGGGGCTAGCAGATGTCAAAATTCCACTTACCGCTATCGCCAAATGGGGTTCACAATATCCACAATACTTCACATTCCT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTCGACCACTTCTTCTTCTTCTTCTTCAAATATATTCCCGGACGTTCAGAGATCWCTAGACGCAGATATCCAAAGAGACTTCTATTCTCAGTGTTTCGAGAGACGCAGGCTTCTATTTCTACCTACACCTGTTCTTTATAGTGGGACCATAGTAATTAGAATCTTATGGGGGCTAGCAGATGTCAAAATTCCACTTACCGCTATCGCCAAATGGGGTTCACAATATCCACAATACTTCACATTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27230</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>251746</contig_pos>
        <strand>+</strand>
        <context>TCTCAGTGTT[C/T]CGAGAGACGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGAGATCTCTAGACGCAGATATCCAAAGAGACTTCTATTCTCAGTGTT</left_flank>
        <right_flank>CGAGAGACGCAGGCTTCTATTTCTACCTACACCTGTTCTTTATAGTGGGA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAAGACCTTGTGTGTGTAGACGCAGTGCCGTGGCTTATGATATTGTAGAGAGACGAAGAGAGAAACAGAGAAAAAGTTAGATGTTACATGAGAGAGAGAGAGAAAGCAGTGTCCGGAGCACAGCAACAAGGCCCCCCAACCGCCAATTTGTTCGTTTCTCTGTCTGCGTCTCTCCATCTATATCCTTCCTTTTGCGCAACTACGCGCCCCCCGGAGCACTATTTGTCGTTGTCACACTACTCAGTCAGGCCCCTTTCCTTCTTCTTCTTCTTCTTCGTCTATCTCTCGTCGTCTACCCTCTCTATCTCCACATCTCCTATTTCTTCTTCACTTTTCTACTCCATCCATTCGTTTTGTGCTGAATGGTGTGGAAGCACGCGGGGGTCCCTTTCTCCTCCCCTTTTCGACCACTTCTTCTTCTTCTTCTTCAAATATATTCCCGGACGTTCAGAGATCTCTAGACGCAGATATCCAAAGAGACTTCTATTCTCAGTGTTTCGAGAGACGCAGGCTTCTATTTCTACCTACACCTGTTCTTTATAGTGGGACCATAGTAATTAGAATCTTATGGGGGCTAGCAGATGTCAAAATTCCACTTACCGCTATCGCCAAATGGGGTTCACAATATCCACAATACTTCACATTCCTACTAACGGCTCCCTCTTCACACAGCAGTCCTTGTCGTTGTGCACATGTGACGTGGAAGCTTTTCTTGCATTTGTGAATATTACATGTCATACATGCCCCTTTTTTAGCATCATTAGGTCGATCGGCTTCTTTACAAATGTAGCAGACTTTTTGGAATCTGCAAATTCGCAAATATTTAAAACGTTCCATCTCAAAAAAAAAAGAAAAATAACTCACTTATCAAGAGGCACATCGGACAATATCACTGGTTCCATACTATGAACATTTCCAAATCTGACTTCTGGGATATACAATGCACATATCACATGAGCCCATCCATCTTTTCGATCCGTCCTTTTCAATGCGCCATG</canonical>
            <polymorphic>AAGAAGACCTTGTGTGTGTAGACGCAGTGCCGTGGCTTATGATATTGTAGAGAGACGAAGAGAGAAACAGAGAAAAAGTTAGATGTTACATGAGAGAGAGAGAGAAAGCAGTGTCCGGAGCACAGCAACAAGGCCCCCCAACCGCCAATTTGTTCGTTTCTCTGTCTGCGTCTCTCCATCTATATCCTTCCTTTTGCGCAACTACGCGCCCCCCGGAGCACTATTTGTCGTTGTCACACTACTCAGTCAGGCCCCTTTCCTTCTTCTTCTTCTTCTTCGTCTATCTCTCGTCGTCTACCCTCTCTATCTCCACATCTCCTATTTCTTCTTCACTTTTCTACTCCATCCATTCGTTTTGTGCTGAATGGTGTGGAAGCACGCGGGGGTCCCTTTCTCCTCCCCTTTTCGACCACTTCTTCTTCTTCTTCTTCAAATATATTCCCGGACGTTCAGAGATCTCTAGACGCAGATATCCAAAGAGACTTCTATTCTCAGTGTTYCGAGAGACGCAGGCTTCTATTTCTACCTACACCTGTTCTTTATAGTGGGACCATAGTAATTAGAATCTTATGGGGGCTAGCAGATGTCAAAATTCCACTTACCGCTATCGCCAAATGGGGTTCACAATATCCACAATACTTCACATTCCTACTAACGGCTCCCTCTTCACACAGCAGTCCTTGTCGTTGTGCACATGTGACGTGGAAGCTTTTCTTGCATTTGTGAATATTACATGTCATACATGCCCCTTTTTTAGCATCATTAGGTCGATCGGCTTCTTTACAAATGTAGCAGACTTTTTGGAATCTGCAAATTCGCAAATATTTAAAACGTTCCATCTCAAAAAAAAAAGAAAAATAACTCACTTATCAAGAGGCACATCGGACAATATCACTGGTTCCATACTATGAACATTTCCAAATCTGACTTCTGGGATATACAATGCACATATCACATGAGCCCATCCATCTTTTCGATCCGTCCTTTTCAATGCGCCATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>407 268 206 94 25</canonical_bands>
                <polymorphic_bands>407 362 206 25</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>370 345 129 115 41</canonical_bands>
                <polymorphic_bands>411 345 129 115</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCACTTCTTCTTCTTCTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>CCGTTAGTAGGAATGTGAAGTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCACTTCTTCTTCTTCTTCTTCAAATATATTCCCGGACGTTCAGAGATCTCTAGACGCAGATATCCAAAGAGACTTCTATTCTCAGTGTTTCGAGAGACGCAGGCTTCTATTTCTACCTACACCTGTTCTTTATAGTGGGACCATAGTAATTAGAATCTTATGGGGGCTAGCAGATGTCAAAATTCCACTTACCGCTATCGCCAAATGGGGTTCACAATATCCACAATACTTCACATTCCTACTAACGG</canonical_amplicon>
		<polymorphic_amplicon>ACCACTTCTTCTTCTTCTTCTTCAAATATATTCCCGGACGTTCAGAGATCTCTAGACGCAGATATCCAAAGAGACTTCTATTCTCAGTGTTYCGAGAGACGCAGGCTTCTATTTCTACCTACACCTGTTCTTTATAGTGGGACCATAGTAATTAGAATCTTATGGGGGCTAGCAGATGTCAAAATTCCACTTACCGCTATCGCCAAATGGGGTTCACAATATCCACAATACTTCACATTCCTACTAACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27231</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>251782</contig_pos>
        <strand>+</strand>
        <context>CCTACACCTG[C/T]TCTTTATAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTATTCTCAGTGTTTCGAGAGACGCAGGCTTCTATTTCTACCTACACCTG</left_flank>
        <right_flank>TCTTTATAGTGGGACCATAGTAATTAGAATCTTATGGGGGCTAGCAGATG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATGATATTGTAGAGAGACGAAGAGAGAAACAGAGAAAAAGTTAGATGTTACATGAGAGAGAGAGAGAAAGCAGTGTCCGGAGCACAGCAACAAGGCCCCCCAACCGCCAATTTGTTCGTTTCTCTGTCTGCGTCTCTCCATCTATATCCTTCCTTTTGCGCAACTACGCGCCCCCCGGAGCACTATTTGTCGTTGTCACACTACTCAGTCAGGCCCCTTTCCTTCTTCTTCTTCTTCTTCGTCTATCTCTCGTCGTCTACCCTCTCTATCTCCACATCTCCTATTTCTTCTTCACTTTTCTACTCCATCCATTCGTTTTGTGCTGAATGGTGTGGAAGCACGCGGGGGTCCCTTTCTCCTCCCCTTTTCGACCACTTCTTCTTCTTCTTCTTCAAATATATTCCCGGACGTTCAGAGATCTCTAGACGCAGATATCCAAAGAGACTTCTATTCTCAGTGTTTCGAGAGACGCAGGCTTCTATTTCTACCTACACCTGTTCTTTATAGTGGGACCATAGTAATTAGAATCTTATGGGGGCTAGCAGATGTCAAAATTCCACTTACCGCTATCGCCAAATGGGGTTCACAATATCCACAATACTTCACATTCCTACTAACGGCTCCCTCTTCACACAGCAGTCCTTGTCGTTGTGCACATGTGACGTGGAAGCTTTTCTTGCATTTGTGAATATTACATGTCATACATGCCCCTTTTTTAGCATCATTAGGTCGATCGGCTTCTTTACAAATGTAGCAGACTTTTTGGAATCTGCAAATTCGCAAATATTTAAAACGTTCCATCTCAAAAAAAAAAGAAAAATAACTCACTTATCAAGAGGCACATCGGACAATATCACTGGTTCCATACTATGAACATTTCCAAATCTGACTTCTGGGATATACAATGCACATATCACATGAGCCCATCCATCTTTTCGATCCGTCCTTTTCAATGCGCCATGATCAAACGGACACAATTGACAACAAAACGTTTCGTC</canonical>
            <polymorphic>TTATGATATTGTAGAGAGACGAAGAGAGAAACAGAGAAAAAGTTAGATGTTACATGAGAGAGAGAGAGAAAGCAGTGTCCGGAGCACAGCAACAAGGCCCCCCAACCGCCAATTTGTTCGTTTCTCTGTCTGCGTCTCTCCATCTATATCCTTCCTTTTGCGCAACTACGCGCCCCCCGGAGCACTATTTGTCGTTGTCACACTACTCAGTCAGGCCCCTTTCCTTCTTCTTCTTCTTCTTCGTCTATCTCTCGTCGTCTACCCTCTCTATCTCCACATCTCCTATTTCTTCTTCACTTTTCTACTCCATCCATTCGTTTTGTGCTGAATGGTGTGGAAGCACGCGGGGGTCCCTTTCTCCTCCCCTTTTCGACCACTTCTTCTTCTTCTTCTTCAAATATATTCCCGGACGTTCAGAGATCTCTAGACGCAGATATCCAAAGAGACTTCTATTCTCAGTGTTTCGAGAGACGCAGGCTTCTATTTCTACCTACACCTGYTCTTTATAGTGGGACCATAGTAATTAGAATCTTATGGGGGCTAGCAGATGTCAAAATTCCACTTACCGCTATCGCCAAATGGGGTTCACAATATCCACAATACTTCACATTCCTACTAACGGCTCCCTCTTCACACAGCAGTCCTTGTCGTTGTGCACATGTGACGTGGAAGCTTTTCTTGCATTTGTGAATATTACATGTCATACATGCCCCTTTTTTAGCATCATTAGGTCGATCGGCTTCTTTACAAATGTAGCAGACTTTTTGGAATCTGCAAATTCGCAAATATTTAAAACGTTCCATCTCAAAAAAAAAAGAAAAATAACTCACTTATCAAGAGGCACATCGGACAATATCACTGGTTCCATACTATGAACATTTCCAAATCTGACTTCTGGGATATACAATGCACATATCACATGAGCCCATCCATCTTTTCGATCCGTCCTTTTCAATGCGCCATGATCAAACGGACACAATTGACAACAAAACGTTTCGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCACTTCTTCTTCTTCTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>CCGTTAGTAGGAATGTGAAGTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCACTTCTTCTTCTTCTTCTTCAAATATATTCCCGGACGTTCAGAGATCTCTAGACGCAGATATCCAAAGAGACTTCTATTCTCAGTGTTTCGAGAGACGCAGGCTTCTATTTCTACCTACACCTGTTCTTTATAGTGGGACCATAGTAATTAGAATCTTATGGGGGCTAGCAGATGTCAAAATTCCACTTACCGCTATCGCCAAATGGGGTTCACAATATCCACAATACTTCACATTCCTACTAACGG</canonical_amplicon>
		<polymorphic_amplicon>ACCACTTCTTCTTCTTCTTCTTCAAATATATTCCCGGACGTTCAGAGATCTCTAGACGCAGATATCCAAAGAGACTTCTATTCTCAGTGTTTCGAGAGACGCAGGCTTCTATTTCTACCTACACCTGYTCTTTATAGTGGGACCATAGTAATTAGAATCTTATGGGGGCTAGCAGATGTCAAAATTCCACTTACCGCTATCGCCAAATGGGGTTCACAATATCCACAATACTTCACATTCCTACTAACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27232</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>252008</contig_pos>
        <strand>+</strand>
        <context>TTTTAGCATC[A/G]TTAGGTCGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTTGCATTTGTGAATATTACATGTCATACATGCCCCTTTTTTAGCATC</left_flank>
        <right_flank>TTAGGTCGATCGGCTTCTTTACAAATGTAGCAGACTTTTTGGAATCTGCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCTTCTTCTTCTTCGTCTATCTCTCGTCGTCTACCCTCTCTATCTCCACATCTCCTATTTCTTCTTCACTTTTCTACTCCATCCATTCGTTTTGTGCTGAATGGTGTGGAAGCACGCGGGGGTCCCTTTCTCCTCCCCTTTTCGACCACTTCTTCTTCTTCTTCTTCAAATATATTCCCGGACGTTCAGAGATCTCTAGACGCAGATATCCAAAGAGACTTCTATTCTCAGTGTTTCGAGAGACGCAGGCTTCTATTTCTACCTACACCTGTTCTTTATAGTGGGACCATAGTAATTAGAATCTTATGGGGGCTAGCAGATGTCAAAATTCCACTTACCGCTATCGCCAAATGGGGTTCACAATATCCACAATACTTCACATTCCTACTAACGGCTCCCTCTTCACACAGCAGTCCTTGTCGTTGTGCACATGTGACGTGGAAGCTTTTCTTGCATTTGTGAATATTACATGTCATACATGCCCCTTTTTTAGCATCATTAGGTCGATCGGCTTCTTTACAAATGTAGCAGACTTTTTGGAATCTGCAAATTCGCAAATATTTAAAACGTTCCATCTCAAAAAAAAAAGAAAAATAACTCACTTATCAAGAGGCACATCGGACAATATCACTGGTTCCATACTATGAACATTTCCAAATCTGACTTCTGGGATATACAATGCACATATCACATGAGCCCATCCATCTTTTCGATCCGTCCTTTTCAATGCGCCATGATCAAACGGACACAATTGACAACAAAACGTTTCGTCGTTTATACTTCCTGGCAACATCCCCGCCGCTTTCGTACATTTCGCACAAAACCATTCGCCTTCGGGCACTTCTTGAATTCCGTAACATCCTGAAAAGTGGATATTAACATCGAATTGGAACCTTAAAACCCTCACCTTGATGTACAGCGACTTCACAATTCTCTCCGTCACAGTAAATCAGTGGATTGTCTACCCAGCCATTATCGTCTGCACAAACGCAGCATCC</canonical>
            <polymorphic>CTTCTTCTTCTTCTTCGTCTATCTCTCGTCGTCTACCCTCTCTATCTCCACATCTCCTATTTCTTCTTCACTTTTCTACTCCATCCATTCGTTTTGTGCTGAATGGTGTGGAAGCACGCGGGGGTCCCTTTCTCCTCCCCTTTTCGACCACTTCTTCTTCTTCTTCTTCAAATATATTCCCGGACGTTCAGAGATCTCTAGACGCAGATATCCAAAGAGACTTCTATTCTCAGTGTTTCGAGAGACGCAGGCTTCTATTTCTACCTACACCTGTTCTTTATAGTGGGACCATAGTAATTAGAATCTTATGGGGGCTAGCAGATGTCAAAATTCCACTTACCGCTATCGCCAAATGGGGTTCACAATATCCACAATACTTCACATTCCTACTAACGGCTCCCTCTTCACACAGCAGTCCTTGTCGTTGTGCACATGTGACGTGGAAGCTTTTCTTGCATTTGTGAATATTACATGTCATACATGCCCCTTTTTTAGCATCRTTAGGTCGATCGGCTTCTTTACAAATGTAGCAGACTTTTTGGAATCTGCAAATTCGCAAATATTTAAAACGTTCCATCTCAAAAAAAAAAGAAAAATAACTCACTTATCAAGAGGCACATCGGACAATATCACTGGTTCCATACTATGAACATTTCCAAATCTGACTTCTGGGATATACAATGCACATATCACATGAGCCCATCCATCTTTTCGATCCGTCCTTTTCAATGCGCCATGATCAAACGGACACAATTGACAACAAAACGTTTCGTCGTTTATACTTCCTGGCAACATCCCCGCCGCTTTCGTACATTTCGCACAAAACCATTCGCCTTCGGGCACTTCTTGAATTCCGTAACATCCTGAAAAGTGGATATTAACATCGAATTGGAACCTTAAAACCCTCACCTTGATGTACAGCGACTTCACAATTCTCTCCGTCACAGTAAATCAGTGGATTGTCTACCCAGCCATTATCGTCTGCACAAACGCAGCATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACAATACTTCACATTCCTACT</pcr_primer_p1>
		<pcr_primer_p2>GCCTCTTGATAAGTGAGTTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCACAATACTTCACATTCCTACTAACGGCTCCCTCTTCACACAGCAGTCCTTGTCGTTGTGCACATGTGACGTGGAAGCTTTTCTTGCATTTGTGAATATTACATGTCATACATGCCCCTTTTTTAGCATCATTAGGTCGATCGGCTTCTTTACAAATGTAGCAGACTTTTTGGAATCTGCAAATTCGCAAATATTTAAAACGTTCCATCTCAAAAAAAAAAGAAAAATAACTCACTTATCAAGAGGC</canonical_amplicon>
		<polymorphic_amplicon>CCACAATACTTCACATTCCTACTAACGGCTCCCTCTTCACACAGCAGTCCTTGTCGTTGTGCACATGTGACGTGGAAGCTTTTCTTGCATTTGTGAATATTACATGTCATACATGCCCCTTTTTTAGCATCRTTAGGTCGATCGGCTTCTTTACAAATGTAGCAGACTTTTTGGAATCTGCAAATTCGCAAATATTTAAAACGTTCCATCTCAAAAAAAAAAGAAAAATAACTCACTTATCAAGAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27233</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>252057</contig_pos>
        <strand>+</strand>
        <context>TTGGAATCTG[C/G]AAATTCGCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CATTAGGTCGATCGGCTTCTTTACAAATGTAGCAGACTTTTTGGAATCTG</left_flank>
        <right_flank>AAATTCGCAAATATTTAAAACGTTCCATCTCAAAAAAAAAAGAAAAATAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATCTCCTATTTCTTCTTCACTTTTCTACTCCATCCATTCGTTTTGTGCTGAATGGTGTGGAAGCACGCGGGGGTCCCTTTCTCCTCCCCTTTTCGACCACTTCTTCTTCTTCTTCTTCAAATATATTCCCGGACGTTCAGAGATCTCTAGACGCAGATATCCAAAGAGACTTCTATTCTCAGTGTTTCGAGAGACGCAGGCTTCTATTTCTACCTACACCTGTTCTTTATAGTGGGACCATAGTAATTAGAATCTTATGGGGGCTAGCAGATGTCAAAATTCCACTTACCGCTATCGCCAAATGGGGTTCACAATATCCACAATACTTCACATTCCTACTAACGGCTCCCTCTTCACACAGCAGTCCTTGTCGTTGTGCACATGTGACGTGGAAGCTTTTCTTGCATTTGTGAATATTACATGTCATACATGCCCCTTTTTTAGCATCATTAGGTCGATCGGCTTCTTTACAAATGTAGCAGACTTTTTGGAATCTGCAAATTCGCAAATATTTAAAACGTTCCATCTCAAAAAAAAAAGAAAAATAACTCACTTATCAAGAGGCACATCGGACAATATCACTGGTTCCATACTATGAACATTTCCAAATCTGACTTCTGGGATATACAATGCACATATCACATGAGCCCATCCATCTTTTCGATCCGTCCTTTTCAATGCGCCATGATCAAACGGACACAATTGACAACAAAACGTTTCGTCGTTTATACTTCCTGGCAACATCCCCGCCGCTTTCGTACATTTCGCACAAAACCATTCGCCTTCGGGCACTTCTTGAATTCCGTAACATCCTGAAAAGTGGATATTAACATCGAATTGGAACCTTAAAACCCTCACCTTGATGTACAGCGACTTCACAATTCTCTCCGTCACAGTAAATCAGTGGATTGTCTACCCAGCCATTATCGTCTGCACAAACGCAGCATCCTCCGACCATTTCTTTTGTCATTTTGATCTGATTTCAAATATCCGCTCTC</canonical>
            <polymorphic>ACATCTCCTATTTCTTCTTCACTTTTCTACTCCATCCATTCGTTTTGTGCTGAATGGTGTGGAAGCACGCGGGGGTCCCTTTCTCCTCCCCTTTTCGACCACTTCTTCTTCTTCTTCTTCAAATATATTCCCGGACGTTCAGAGATCTCTAGACGCAGATATCCAAAGAGACTTCTATTCTCAGTGTTTCGAGAGACGCAGGCTTCTATTTCTACCTACACCTGTTCTTTATAGTGGGACCATAGTAATTAGAATCTTATGGGGGCTAGCAGATGTCAAAATTCCACTTACCGCTATCGCCAAATGGGGTTCACAATATCCACAATACTTCACATTCCTACTAACGGCTCCCTCTTCACACAGCAGTCCTTGTCGTTGTGCACATGTGACGTGGAAGCTTTTCTTGCATTTGTGAATATTACATGTCATACATGCCCCTTTTTTAGCATCATTAGGTCGATCGGCTTCTTTACAAATGTAGCAGACTTTTTGGAATCTGSAAATTCGCAAATATTTAAAACGTTCCATCTCAAAAAAAAAAGAAAAATAACTCACTTATCAAGAGGCACATCGGACAATATCACTGGTTCCATACTATGAACATTTCCAAATCTGACTTCTGGGATATACAATGCACATATCACATGAGCCCATCCATCTTTTCGATCCGTCCTTTTCAATGCGCCATGATCAAACGGACACAATTGACAACAAAACGTTTCGTCGTTTATACTTCCTGGCAACATCCCCGCCGCTTTCGTACATTTCGCACAAAACCATTCGCCTTCGGGCACTTCTTGAATTCCGTAACATCCTGAAAAGTGGATATTAACATCGAATTGGAACCTTAAAACCCTCACCTTGATGTACAGCGACTTCACAATTCTCTCCGTCACAGTAAATCAGTGGATTGTCTACCCAGCCATTATCGTCTGCACAAACGCAGCATCCTCCGACCATTTCTTTTGTCATTTTGATCTGATTTCAAATATCCGCTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>380 301 135 93 65 26</canonical_bands>
                <polymorphic_bands>380 301 228 65 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACAATACTTCACATTCCTACT</pcr_primer_p1>
		<pcr_primer_p2>GCCTCTTGATAAGTGAGTTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCACAATACTTCACATTCCTACTAACGGCTCCCTCTTCACACAGCAGTCCTTGTCGTTGTGCACATGTGACGTGGAAGCTTTTCTTGCATTTGTGAATATTACATGTCATACATGCCCCTTTTTTAGCATCATTAGGTCGATCGGCTTCTTTACAAATGTAGCAGACTTTTTGGAATCTGCAAATTCGCAAATATTTAAAACGTTCCATCTCAAAAAAAAAAGAAAAATAACTCACTTATCAAGAGGC</canonical_amplicon>
		<polymorphic_amplicon>CCACAATACTTCACATTCCTACTAACGGCTCCCTCTTCACACAGCAGTCCTTGTCGTTGTGCACATGTGACGTGGAAGCTTTTCTTGCATTTGTGAATATTACATGTCATACATGCCCCTTTTTTAGCATCATTAGGTCGATCGGCTTCTTTACAAATGTAGCAGACTTTTTGGAATCTGSAAATTCGCAAATATTTAAAACGTTCCATCTCAAAAAAAAAAGAAAAATAACTCACTTATCAAGAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27234</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>252095</contig_pos>
        <strand>+</strand>
        <context>TCTCAAAAAA[A/T]AAAGAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTGGAATCTGCAAATTCGCAAATATTTAAAACGTTCCATCTCAAAAAA</left_flank>
        <right_flank>AAAGAAAAATAACTCACTTATCAAGAGGCACATCGGACAATATCACTGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGTTTTGTGCTGAATGGTGTGGAAGCACGCGGGGGTCCCTTTCTCCTCCCCTTTTCGACCACTTCTTCTTCTTCTTCTTCAAATATATTCCCGGACGTTCAGAGATCTCTAGACGCAGATATCCAAAGAGACTTCTATTCTCAGTGTTTCGAGAGACGCAGGCTTCTATTTCTACCTACACCTGTTCTTTATAGTGGGACCATAGTAATTAGAATCTTATGGGGGCTAGCAGATGTCAAAATTCCACTTACCGCTATCGCCAAATGGGGTTCACAATATCCACAATACTTCACATTCCTACTAACGGCTCCCTCTTCACACAGCAGTCCTTGTCGTTGTGCACATGTGACGTGGAAGCTTTTCTTGCATTTGTGAATATTACATGTCATACATGCCCCTTTTTTAGCATCATTAGGTCGATCGGCTTCTTTACAAATGTAGCAGACTTTTTGGAATCTGCAAATTCGCAAATATTTAAAACGTTCCATCTCAAAAAAAAAAGAAAAATAACTCACTTATCAAGAGGCACATCGGACAATATCACTGGTTCCATACTATGAACATTTCCAAATCTGACTTCTGGGATATACAATGCACATATCACATGAGCCCATCCATCTTTTCGATCCGTCCTTTTCAATGCGCCATGATCAAACGGACACAATTGACAACAAAACGTTTCGTCGTTTATACTTCCTGGCAACATCCCCGCCGCTTTCGTACATTTCGCACAAAACCATTCGCCTTCGGGCACTTCTTGAATTCCGTAACATCCTGAAAAGTGGATATTAACATCGAATTGGAACCTTAAAACCCTCACCTTGATGTACAGCGACTTCACAATTCTCTCCGTCACAGTAAATCAGTGGATTGTCTACCCAGCCATTATCGTCTGCACAAACGCAGCATCCTCCGACCATTTCTTTTGTCATTTTGATCTGATTTCAAATATCCGCTCTCACGAAAACGATGATGATAACTTTGGTTTTTGTGAGTTA</canonical>
            <polymorphic>TTCGTTTTGTGCTGAATGGTGTGGAAGCACGCGGGGGTCCCTTTCTCCTCCCCTTTTCGACCACTTCTTCTTCTTCTTCTTCAAATATATTCCCGGACGTTCAGAGATCTCTAGACGCAGATATCCAAAGAGACTTCTATTCTCAGTGTTTCGAGAGACGCAGGCTTCTATTTCTACCTACACCTGTTCTTTATAGTGGGACCATAGTAATTAGAATCTTATGGGGGCTAGCAGATGTCAAAATTCCACTTACCGCTATCGCCAAATGGGGTTCACAATATCCACAATACTTCACATTCCTACTAACGGCTCCCTCTTCACACAGCAGTCCTTGTCGTTGTGCACATGTGACGTGGAAGCTTTTCTTGCATTTGTGAATATTACATGTCATACATGCCCCTTTTTTAGCATCATTAGGTCGATCGGCTTCTTTACAAATGTAGCAGACTTTTTGGAATCTGCAAATTCGCAAATATTTAAAACGTTCCATCTCAAAAAAWAAAGAAAAATAACTCACTTATCAAGAGGCACATCGGACAATATCACTGGTTCCATACTATGAACATTTCCAAATCTGACTTCTGGGATATACAATGCACATATCACATGAGCCCATCCATCTTTTCGATCCGTCCTTTTCAATGCGCCATGATCAAACGGACACAATTGACAACAAAACGTTTCGTCGTTTATACTTCCTGGCAACATCCCCGCCGCTTTCGTACATTTCGCACAAAACCATTCGCCTTCGGGCACTTCTTGAATTCCGTAACATCCTGAAAAGTGGATATTAACATCGAATTGGAACCTTAAAACCCTCACCTTGATGTACAGCGACTTCACAATTCTCTCCGTCACAGTAAATCAGTGGATTGTCTACCCAGCCATTATCGTCTGCACAAACGCAGCATCCTCCGACCATTTCTTTTGTCATTTTGATCTGATTTCAAATATCCGCTCTCACGAAAACGATGATGATAACTTTGGTTTTTGTGAGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTACAAATGTAGCAGACTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>GTTTTGTTGTCAATTGTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTACAAATGTAGCAGACTTTTTGGAATCTGCAAATTCGCAAATATTTAAAACGTTCCATCTCAAAAAAAAAAGAAAAATAACTCACTTATCAAGAGGCACATCGGACAATATCACTGGTTCCATACTATGAACATTTCCAAATCTGACTTCTGGGATATACAATGCACATATCACATGAGCCCATCCATCTTTTCGATCCGTCCTTTTCAATGCGCCATGATCAAACGGACACAATTGACAACAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TTTACAAATGTAGCAGACTTTTTGGAATCTGCAAATTCGCAAATATTTAAAACGTTCCATCTCAAAAAAWAAAGAAAAATAACTCACTTATCAAGAGGCACATCGGACAATATCACTGGTTCCATACTATGAACATTTCCAAATCTGACTTCTGGGATATACAATGCACATATCACATGAGCCCATCCATCTTTTCGATCCGTCCTTTTCAATGCGCCATGATCAAACGGACACAATTGACAACAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27235</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>253774</contig_pos>
        <strand>+</strand>
        <context>TGGGCGTGAA[C/G]AAGAATGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGATTCGAATGCAATTCAATTCAACTCAAAAAAACGTTGATGGGCGTGAA</left_flank>
        <right_flank>AAGAATGAATATACACATAGATTGCGAATGAGAAGAGAAGAAGAAGAAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATAGAAACTAGAGGTTACAGTATTCCTATTCCAGCGTCTAAAGGACCAACGTCTAAGCGTCTAATTCCCAGATTCCAAGTAATTTTAAGCATCTAATTCCAGCGTCAAAGCGAGAAAATATTTGGAAAAACCGGGAAAAACTGTAAAGAATGCAAACGCGCTCTATTTTTTCGAGTTCTCAATTGAGAACTCGAAAAAATTTGATTTCCCACAGAATTCACAAAACTTAAAGAAAAGGGCTCTAAAATAGTTGAAATTCTCAAAAAATCCATGAAGATCACAAAAATGGTGTTGATAAATAGAATCGACCGAAAAATACATCTTATCGAGAAACCAGAACCAAAAATAGGTCAAATCGCTCTCAAAAAAAGAAAAGAAGAATATTTCAACGCCTTTCCATCTTCTTCTTCCTCCTTTCTCATTCTTATTTTATCGGGCGACTATGATCGATTCGAATGCAATTCAATTCAACTCAAAAAAACGTTGATGGGCGTGAAGAAGAATGAATATACACATAGATTGCGAATGAGAAGAGAAGAAGAAGAAGGGAAGGAGAGAAGAAATACAACTGATAACGACATCGTCGGTTGTCGTCACCCAACATCTCGATTTGAATGTGAGAGAGAGTGAAGAGACGCAGACACACTCCCTACAGTAGGCATCTCTCACACAAGGAGAAGCAATCGAGCGAAGAAGAAGAAGAAGGCGGACACACAACTTGGCATTGAGCCAGCCCTCGAATGGAAAAAGAGAGAAATATGGAAGAAGCACGAAGAATTCTACGAGCGGCTCTTCTATGTCACATGCATGCATACTCTCGTTTCTGCTTCTTCTTTCACAAACACACACAAATAGCAACAACGCCCCCTAGAGCAGTAGCTCTTTTTACTCTTACTATCTGCGTTTTGTGGTCTCTCCTCTTCTATTTTTTTTCTCTTTCACTCGGTCAAAACTGCTCCAAAACAATTATTTGAAAGGCTGCTTGCCTTGTGTGGGGG</canonical>
            <polymorphic>TAATAGAAACTAGAGGTTACAGTATTCCTATTCCAGCGTCTAAAGGACCAACGTCTAAGCGTCTAATTCCCAGATTCCAAGTAATTTTAAGCATCTAATTCCAGCGTCAAAGCGAGAAAATATTTGGAAAAACCGGGAAAAACTGTAAAGAATGCAAACGCGCTCTATTTTTTCGAGTTCTCAATTGAGAACTCGAAAAAATTTGATTTCCCACAGAATTCACAAAACTTAAAGAAAAGGGCTCTAAAATAGTTGAAATTCTCAAAAAATCCATGAAGATCACAAAAATGGTGTTGATAAATAGAATCGACCGAAAAATACATCTTATCGAGAAACCAGAACCAAAAATAGGTCAAATCGCTCTCAAAAAAAGAAAAGAAGAATATTTCAACGCCTTTCCATCTTCTTCTTCCTCCTTTCTCATTCTTATTTTATCGGGCGACTATGATCGATTCGAATGCAATTCAATTCAACTCAAAAAAACGTTGATGGGCGTGAASAAGAATGAATATACACATAGATTGCGAATGAGAAGAGAAGAAGAAGAAGGGAAGGAGAGAAGAAATACAACTGATAACGACATCGTCGGTTGTCGTCACCCAACATCTCGATTTGAATGTGAGAGAGAGTGAAGAGACGCAGACACACTCCCTACAGTAGGCATCTCTCACACAAGGAGAAGCAATCGAGCGAAGAAGAAGAAGAAGGCGGACACACAACTTGGCATTGAGCCAGCCCTCGAATGGAAAAAGAGAGAAATATGGAAGAAGCACGAAGAATTCTACGAGCGGCTCTTCTATGTCACATGCATGCATACTCTCGTTTCTGCTTCTTCTTTCACAAACACACACAAATAGCAACAACGCCCCCTAGAGCAGTAGCTCTTTTTACTCTTACTATCTGCGTTTTGTGGTCTCTCCTCTTCTATTTTTTTTCTCTTTCACTCGGTCAAAACTGCTCCAAAACAATTATTTGAAAGGCTGCTTGCCTTGTGTGGGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAACCAAAAATAGGTCAAAT</pcr_primer_p1>
		<pcr_primer_p2>ACGATGTCGTTATCAGTTGTATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGAACCAAAAATAGGTCAAATCGCTCTCAAAAAAAGAAAAGAAGAATATTTCAACGCCTTTCCATCTTCTTCTTCCTCCTTTCTCATTCTTATTTTATCGGGCGACTATGATCGATTCGAATGCAATTCAATTCAACTCAAAAAAACGTTGATGGGCGTGAAGAAGAATGAATATACACATAGATTGCGAATGAGAAGAGAAGAAGAAGAAGGGAAGGAGAGAAGAAATACAACTGATAACGACATCGT</canonical_amplicon>
		<polymorphic_amplicon>CAGAACCAAAAATAGGTCAAATCGCTCTCAAAAAAAGAAAAGAAGAATATTTCAACGCCTTTCCATCTTCTTCTTCCTCCTTTCTCATTCTTATTTTATCGGGCGACTATGATCGATTCGAATGCAATTCAATTCAACTCAAAAAAACGTTGATGGGCGTGAASAAGAATGAATATACACATAGATTGCGAATGAGAAGAGAAGAAGAAGAAGGGAAGGAGAGAAGAAATACAACTGATAACGACATCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27236</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>253804</contig_pos>
        <strand>+</strand>
        <context>GATTGCGAAT[C/G]AGAAGAGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAACGTTGATGGGCGTGAAGAAGAATGAATATACACATAGATTGCGAAT</left_flank>
        <right_flank>AGAAGAGAAGAAGAAGAAGGGAAGGAGAGAAGAAATACAACTGATAACGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCAGCGTCTAAAGGACCAACGTCTAAGCGTCTAATTCCCAGATTCCAAGTAATTTTAAGCATCTAATTCCAGCGTCAAAGCGAGAAAATATTTGGAAAAACCGGGAAAAACTGTAAAGAATGCAAACGCGCTCTATTTTTTCGAGTTCTCAATTGAGAACTCGAAAAAATTTGATTTCCCACAGAATTCACAAAACTTAAAGAAAAGGGCTCTAAAATAGTTGAAATTCTCAAAAAATCCATGAAGATCACAAAAATGGTGTTGATAAATAGAATCGACCGAAAAATACATCTTATCGAGAAACCAGAACCAAAAATAGGTCAAATCGCTCTCAAAAAAAGAAAAGAAGAATATTTCAACGCCTTTCCATCTTCTTCTTCCTCCTTTCTCATTCTTATTTTATCGGGCGACTATGATCGATTCGAATGCAATTCAATTCAACTCAAAAAAACGTTGATGGGCGTGAAGAAGAATGAATATACACATAGATTGCGAATGAGAAGAGAAGAAGAAGAAGGGAAGGAGAGAAGAAATACAACTGATAACGACATCGTCGGTTGTCGTCACCCAACATCTCGATTTGAATGTGAGAGAGAGTGAAGAGACGCAGACACACTCCCTACAGTAGGCATCTCTCACACAAGGAGAAGCAATCGAGCGAAGAAGAAGAAGAAGGCGGACACACAACTTGGCATTGAGCCAGCCCTCGAATGGAAAAAGAGAGAAATATGGAAGAAGCACGAAGAATTCTACGAGCGGCTCTTCTATGTCACATGCATGCATACTCTCGTTTCTGCTTCTTCTTTCACAAACACACACAAATAGCAACAACGCCCCCTAGAGCAGTAGCTCTTTTTACTCTTACTATCTGCGTTTTGTGGTCTCTCCTCTTCTATTTTTTTTCTCTTTCACTCGGTCAAAACTGCTCCAAAACAATTATTTGAAAGGCTGCTTGCCTTGTGTGGGGGGCGAATGAGAGAGGAGAAAAATAGATGGAA</canonical>
            <polymorphic>TTCCAGCGTCTAAAGGACCAACGTCTAAGCGTCTAATTCCCAGATTCCAAGTAATTTTAAGCATCTAATTCCAGCGTCAAAGCGAGAAAATATTTGGAAAAACCGGGAAAAACTGTAAAGAATGCAAACGCGCTCTATTTTTTCGAGTTCTCAATTGAGAACTCGAAAAAATTTGATTTCCCACAGAATTCACAAAACTTAAAGAAAAGGGCTCTAAAATAGTTGAAATTCTCAAAAAATCCATGAAGATCACAAAAATGGTGTTGATAAATAGAATCGACCGAAAAATACATCTTATCGAGAAACCAGAACCAAAAATAGGTCAAATCGCTCTCAAAAAAAGAAAAGAAGAATATTTCAACGCCTTTCCATCTTCTTCTTCCTCCTTTCTCATTCTTATTTTATCGGGCGACTATGATCGATTCGAATGCAATTCAATTCAACTCAAAAAAACGTTGATGGGCGTGAAGAAGAATGAATATACACATAGATTGCGAATSAGAAGAGAAGAAGAAGAAGGGAAGGAGAGAAGAAATACAACTGATAACGACATCGTCGGTTGTCGTCACCCAACATCTCGATTTGAATGTGAGAGAGAGTGAAGAGACGCAGACACACTCCCTACAGTAGGCATCTCTCACACAAGGAGAAGCAATCGAGCGAAGAAGAAGAAGAAGGCGGACACACAACTTGGCATTGAGCCAGCCCTCGAATGGAAAAAGAGAGAAATATGGAAGAAGCACGAAGAATTCTACGAGCGGCTCTTCTATGTCACATGCATGCATACTCTCGTTTCTGCTTCTTCTTTCACAAACACACACAAATAGCAACAACGCCCCCTAGAGCAGTAGCTCTTTTTACTCTTACTATCTGCGTTTTGTGGTCTCTCCTCTTCTATTTTTTTTCTCTTTCACTCGGTCAAAACTGCTCCAAAACAATTATTTGAAAGGCTGCTTGCCTTGTGTGGGGGGCGAATGAGAGAGGAGAAAAATAGATGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAACCAAAAATAGGTCAAAT</pcr_primer_p1>
		<pcr_primer_p2>ACGATGTCGTTATCAGTTGTATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGAACCAAAAATAGGTCAAATCGCTCTCAAAAAAAGAAAAGAAGAATATTTCAACGCCTTTCCATCTTCTTCTTCCTCCTTTCTCATTCTTATTTTATCGGGCGACTATGATCGATTCGAATGCAATTCAATTCAACTCAAAAAAACGTTGATGGGCGTGAAGAAGAATGAATATACACATAGATTGCGAATGAGAAGAGAAGAAGAAGAAGGGAAGGAGAGAAGAAATACAACTGATAACGACATCGT</canonical_amplicon>
		<polymorphic_amplicon>CAGAACCAAAAATAGGTCAAATCGCTCTCAAAAAAAGAAAAGAAGAATATTTCAACGCCTTTCCATCTTCTTCTTCCTCCTTTCTCATTCTTATTTTATCGGGCGACTATGATCGATTCGAATGCAATTCAATTCAACTCAAAAAAACGTTGATGGGCGTGAAGAAGAATGAATATACACATAGATTGCGAATSAGAAGAGAAGAAGAAGAAGGGAAGGAGAGAAGAAATACAACTGATAACGACATCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27237</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>258514</contig_pos>
        <strand>+</strand>
        <context>TTATGACGAT[C/G]GACAATGAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAACAGTGTAGCATCTGCAGGCAGTAAAACAGGTCTCGACTTATGACGAT</left_flank>
        <right_flank>GACAATGAGCGAGACGTTTGAAATCAGCGACACCTCATCGTCGTCTCACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTGATTTATGTCCATCCGCTGAAAATTTAAAAATCTGAATAATTAAACAGTGATTTCGCTAATTACGGTTGGCTACGACAACAACCGTCGGTGGATTCTTCTTTTCTAGTTTCGGCATTACAGCTTTTTTTGAGCTTTTCGCCTGTTGCTTCACAGATTTTTTAGTAGCAGTAATAGAATCCGGTTTGAGCTGAAGGACATGGACTTGTTTCTCGCTTCTAGTCGTTTTCTCATTGGATCCTTTTTTGGCACACATTGCAGAAACTAAAACTGTAACTGGAGCAACTATCTAAAATTGAAAAGAAAAATCTGAGTTATCATCCCGAAAAGAGGTCAAAACTTGCTTTGAAAACATGAATGAGCAAGATGAGAAGAATTTGTTGAGTCGTCATTTTTCGAGGAATACGTTGCTCTCTATCTCACTTCCAGTCAATAGAAATTTTCACGTAACAGTGTAGCATCTGCAGGCAGTAAAACAGGTCTCGACTTATGACGATCGACAATGAGCGAGACGTTTGAAATCAGCGACACCTCATCGTCGTCTCACTCACTTGTATCGGAGAATGGGAAAAAGTATTACTGTCTGAATCCACCAGCGGCTGAGACAAAGCCAGAAACTTCTCAAGCCCCCACAGAAGTTGTCAAAAGTGGCCCTTTGATCTGTGAGCCACGAGCTCCGTCAAGTGGTCCCATGCACTACTACGGTGACACTTTGGTAGTGAAAAATGCCCGGGAAATGTTTAATAATATTGTGAGCTCCAGATTTCCTTGAAACTCACCATTCTTTCGTTTTCCAGGACATCCTAGCCGATGGCCGTTACTTCTGTTGTGTGTGTAAACGTCCGTACAAAACGCACGCCACGTTGACTGCTCATCTCCGGGGATCCCATTTGCGTCAGGAGAGTCGGTGTCTGGAATCAGGATGTAATCAGTGAGTGGATTTAATCTTTGGTATCAGAGAGAACACGGTTTTAGCATATCTCTGACGGAAAACGAGA</canonical>
            <polymorphic>GATTGATTTATGTCCATCCGCTGAAAATTTAAAAATCTGAATAATTAAACAGTGATTTCGCTAATTACGGTTGGCTACGACAACAACCGTCGGTGGATTCTTCTTTTCTAGTTTCGGCATTACAGCTTTTTTTGAGCTTTTCGCCTGTTGCTTCACAGATTTTTTAGTAGCAGTAATAGAATCCGGTTTGAGCTGAAGGACATGGACTTGTTTCTCGCTTCTAGTCGTTTTCTCATTGGATCCTTTTTTGGCACACATTGCAGAAACTAAAACTGTAACTGGAGCAACTATCTAAAATTGAAAAGAAAAATCTGAGTTATCATCCCGAAAAGAGGTCAAAACTTGCTTTGAAAACATGAATGAGCAAGATGAGAAGAATTTGTTGAGTCGTCATTTTTCGAGGAATACGTTGCTCTCTATCTCACTTCCAGTCAATAGAAATTTTCACGTAACAGTGTAGCATCTGCAGGCAGTAAAACAGGTCTCGACTTATGACGATSGACAATGAGCGAGACGTTTGAAATCAGCGACACCTCATCGTCGTCTCACTCACTTGTATCGGAGAATGGGAAAAAGTATTACTGTCTGAATCCACCAGCGGCTGAGACAAAGCCAGAAACTTCTCAAGCCCCCACAGAAGTTGTCAAAAGTGGCCCTTTGATCTGTGAGCCACGAGCTCCGTCAAGTGGTCCCATGCACTACTACGGTGACACTTTGGTAGTGAAAAATGCCCGGGAAATGTTTAATAATATTGTGAGCTCCAGATTTCCTTGAAACTCACCATTCTTTCGTTTTCCAGGACATCCTAGCCGATGGCCGTTACTTCTGTTGTGTGTGTAAACGTCCGTACAAAACGCACGCCACGTTGACTGCTCATCTCCGGGGATCCCATTTGCGTCAGGAGAGTCGGTGTCTGGAATCAGGATGTAATCAGTGAGTGGATTTAATCTTTGGTATCAGAGAGAACACGGTTTTAGCATATCTCTGACGGAAAACGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>258 238 225 163 116</canonical_bands>
                <polymorphic_bands>421 238 225 116</polymorphic_bands>
            </assay>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CGATCG</site>
                <isoschizomers>
                    <enzyme>BspCI</enzyme>
                    <enzyme>Ple19I</enzyme>
                    <enzyme>PvuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 399 87 14</canonical_bands>
                <polymorphic_bands>514 399 87</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTTGCTTTGAAAACATGAAT</pcr_primer_p1>
		<pcr_primer_p2>AGTAATACTTTTTCCCATTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AACTTGCTTTGAAAACATGAATGAGCAAGATGAGAAGAATTTGTTGAGTCGTCATTTTTCGAGGAATACGTTGCTCTCTATCTCACTTCCAGTCAATAGAAATTTTCACGTAACAGTGTAGCATCTGCAGGCAGTAAAACAGGTCTCGACTTATGACGATCGACAATGAGCGAGACGTTTGAAATCAGCGACACCTCATCGTCGTCTCACTCACTTGTATCGGAGAATGGGAAAAAGTATTACT</canonical_amplicon>
		<polymorphic_amplicon>AACTTGCTTTGAAAACATGAATGAGCAAGATGAGAAGAATTTGTTGAGTCGTCATTTTTCGAGGAATACGTTGCTCTCTATCTCACTTCCAGTCAATAGAAATTTTCACGTAACAGTGTAGCATCTGCAGGCAGTAAAACAGGTCTCGACTTATGACGATSGACAATGAGCGAGACGTTTGAAATCAGCGACACCTCATCGTCGTCTCACTCACTTGTATCGGAGAATGGGAAAAAGTATTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27238</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>356568</contig_pos>
        <strand></strand>
        <context>ttccacagct[T/C]cgattttttg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCGTTACTGGGGCCGTTGGCCACGCCCACAAGCTTTTCTCTTCCACAGCT</left_flank>
        <right_flank>CGATTTTTTGTATCAGAATGATTAACCTGAAATTATCGATGTTTTTTCTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCTGTCTGTTTCGTGTATCTTTGATTCTTCTGAACTTTTTCCATTTACTTTTGAGTCATTCGTTGTAAACAAGGTCATGATATTTTTCACCAAATCTTGCCGAATTTCGCAATTTGTCGCGATGTTATTCAGAGTCTTTATAATATCCAGATATATCCAAAGATTTCTGAAGTTATTGAATTTTTAGTTTTTATGTTCTCTCCTAGTTTCTAAATCAGCCACGAAAATTGGAGCTGTAAAAGAGAACATTTGGTGGCAGCAACCACCACTGAACTAATTAGCAAATATTGTTTAGTTTTTTTTTCGATTTTCGTCCGTTTTCCGGCAATTTTTTAGATCCAGAAAAATTTATTTATTTTCCTTTTTTGGAGGTTTTCAACACAAAAATTGTCGAAAAGCAATTTCGATCGAGAAGAAATGACCGGAAGATTTAGGTTACGGTGGTTTTCGTTACTGGGGCCGTTGGCCACGCCCACAAGCTTTTCTCTTCCACAGCTTCGATTTTTTGTATCAGAATGATTAACCTGAAATTATCGATGTTTTTTCTCCCTCCTAGTTTTTTAATCAGCCACATTCTTTATTCAATCAACCGAAACTTGCTTTCAATACATCTCTCTTTTCTGTTCCCAATCTTTAAAAAATTTTAAATTCACAGATCCCATCATGTCACCTTCTGAAGAAGTTCCGAAAGAAGGAGAAGAAGAACCAAAAGAAGAAACTAATGAGTTGGCATCGGAATTCAATTTCTTCGACTTATTTGATGGTATGGAACATGAAAATGATAAGGTCCCAGTAGAATTGCCAACAAAAGTGATATGATATCGTTGATAAAATTTATCGGAGGATTCGAGAAATGGAATGAGTTGAATGAGGATTGTCGATTGGCCGTGGTGAAGTTCTTAGAGTACAAGGATAGATGCAAACTTGGAATTTGTTCCAAAAGAGACTATGAAACTGTGAAATCCACTCCATTGGATGTGTACAAAATCTCAATCTAC</canonical>
            <polymorphic>TCTCTGTCTGTTTCGTGTATCTTTGATTCTTCTGAACTTTTTCCATTTACTTTTGAGTCATTCGTTGTAAACAAGGTCATGATATTTTTCACCAAATCTTGCCGAATTTCGCAATTTGTCGCGATGTTATTCAGAGTCTTTATAATATCCAGATATATCCAAAGATTTCTGAAGTTATTGAATTTTTAGTTTTTATGTTCTCTCCTAGTTTCTAAATCAGCCACGAAAATTGGAGCTGTAAAAGAGAACATTTGGTGGCAGCAACCACCACTGAACTAATTAGCAAATATTGTTTAGTTTTTTTTTCGATTTTCGTCCGTTTTCCGGCAATTTTTTAGATCCAGAAAAATTTATTTATTTTCCTTTTTTGGAGGTTTTCAACACAAAAATTGTCGAAAAGCAATTTCGATCGAGAAGAAATGACCGGAAGATTTAGGTTACGGTGGTTTTCGTTACTGGGGCCGTTGGCCACGCCCACAAGCTTTTCTCTTCCACAGCTYCGATTTTTTGTATCAGAATGATTAACCTGAAATTATCGATGTTTTTTCTCCCTCCTAGTTTTTTAATCAGCCACATTCTTTATTCAATCAACCGAAACTTGCTTTCAATACATCTCTCTTTTCTGTTCCCAATCTTTAAAAAATTTTAAATTCACAGATCCCATCATGTCACCTTCTGAAGAAGTTCCGAAAGAAGGAGAAGAAGAACCAAAAGAAGAAACTAATGAGTTGGCATCGGAATTCAATTTCTTCGACTTATTTGATGGTATGGAACATGAAAATGATAAGGTCCCAGTAGAATTGCCAACAAAAGTGATATGATATCGTTGATAAAATTTATCGGAGGATTCGAGAAATGGAATGAGTTGAATGAGGATTGTCGATTGGCCGTGGTGAAGTTCTTAGAGTACAAGGATAGATGCAAACTTGGAATTTGTTCCAAAAGAGACTATGAAACTGTGAAATCCACTCCATTGGATGTGTACAAAATCTCAATCTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>307 215 119 98 90 87 36 31 13 4</canonical_bands>
                <polymorphic_bands>307 215 126 119 98 87 31 13 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTATGTTCTCTCCTAGTTTCTAA</pcr_primer_p1>
		<pcr_primer_p2>AATAAAGAATGTGGCTGATTAAA</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>TTTTTATGTTCTCTCCTAGTTTCTAAATCAGCCACGAAAATTGGAGCTGTAAAAGAGAACATTTGGTGGCAGCAACCACCACTGAACTAATTAGCAAATATTGTTTAGTTTTTTTTTCGATTTTCGTCCGTTTTCCGGCAATTTTTTAGATCCAGAAAAATTTATTTATTTTCCTTTTTTGGAGGTTTTCAACACAAAAATTGTCGAAAAGCAATTTCGATCGAGAAGAAATGACCGGAAGATTTAGGTTACGGTGGTTTTCGTTACTGGGGCCGTTGGCCACGCCCACAAGCTTTTCTCTTCCACAGCTTCGATTTTTTGTATCAGAATGATTAACCTGAAATTATCGATGTTTTTTCTCCCTCCTAGTTTTTTAATCAGCCACATTCTTTATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTATGTTCTCTCCTAGTTTCTAAATCAGCCACGAAAATTGGAGCTGTAAAAGAGAACATTTGGTGGCAGCAACCACCACTGAACTAATTAGCAAATATTGTTTAGTTTTTTTTTCGATTTTCGTCCGTTTTCCGGCAATTTTTTAGATCCAGAAAAATTTATTTATTTTCCTTTTTTGGAGGTTTTCAACACAAAAATTGTCGAAAAGCAATTTCGATCGAGAAGAAATGACCGGAAGATTTAGGTTACGGTGGTTTTCGTTACTGGGGCCGTTGGCCACGCCCACAAGCTTTTCTCTTCCACAGCTYCGATTTTTTGTATCAGAATGATTAACCTGAAATTATCGATGTTTTTTCTCCCTCCTAGTTTTTTAATCAGCCACATTCTTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27239</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>372636</contig_pos>
        <strand>+</strand>
        <context>GTTTAGAAGT[C/T]YTTATTTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTATTTCTATAAAACTAATATTTCAACGATTTCGATGTGTTTAGAAGT</left_flank>
        <right_flank>TTTATTTTCTAGTTTCCAATTCGAATTTATAAACAAATTCAGTCAAAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACATCTGAGGTGGTGGAAGAGAAACGAAGGTCCCACAACAAAAACCACAGTAACCTGAAAATATTCTTATTTTCAGAGTTTTTCTCGTTTTTCACTGATTTCGTCTGTTTTTCGGTAGTTTTTCTTCAAAAATATTGAAAAAATAAAAAATTTTTGGTGTTCTCTCGTTTTCTGTCAAATCTCGACAAATTTTTGAAGGAAAAGTTACACAAAAATCAGTGAAAATCGAGAAAATTCAGAAAACAAAATTATTTTTAGGTTACTGTAGTCTTCGTTGTAGGACCTTCGGCCACGGCAACCGGCGTTTCTCTTACATAGCTCGGAATTTATGTTACAAGCATAATAGGATTACTGTAGGGTTACTGTAGTTTGGAATTTTGAAGTACAATTCAAAGTTTTGTCTATTTTTTGAAGATTTCCTGGCGGAATTGAAGGACTAAACGCGAAATTATTTCTATAAAACTAATATTTCAACGATTTCGATGTGTTTAGAAGTCTTTATTTTCTAGTTTCCAATTCGAATTTATAAACAAATTCAGTCAAAATTTCCAATAACTTGACTTCTTCTTCTTCTCCTTTTTGTTTCCTCCCTATTACTTACCTTTCGATGCGAAATTTGAAGCCGTCCGTCCAGCGATCGTGGAATCGTCACGCATTCGGTTTTTTGTTGTCCTTGACACTGAAAATTTTCACTTTCTTCTAGGTAATATTGATTCTAGAAGATTCAGAGTCTAAAATTAACATAGTTCCTCTAATAGAAGCCCACTTTGAGCTCAATTATCTCTGTTCCTATGAGAGATATCAAAAATTTGTCAACTAAAAAAATGCGGCTGATAATATCAGAAACATTTTATCAGTTGACAGATTTTTGATGTCTTTCATTGGAGCCGAGGTAATTGAGATCAAAGATGACGGTTTAGACCGTCCAAATTGAGCTAAATTATCTGGGTTCCTGTAAAAGATATCAAAATTTCGTGAGCTGATAAAATTTAGCTGA</canonical>
            <polymorphic>AAAACATCTGAGGTGGTGGAAGAGAAACGAAGGTCCCACAACAAAAACCACAGTAACCTGAAAATATTCTTATTTTCAGAGTTTTTCTCGTTTTTCACTGATTTCGTCTGTTTTTCGGTAGTTTTTCTTCAAAAATATTGAAAAAATAAAAAATTTTTGGTGTTCTCTCGTTTTCTGTCAAATCTCGACAAATTTTTGAAGGAAAAGTTACACAAAAATCAGTGAAAATCGAGAAAATTCAGAAAACAAAATTATTTTTAGGTTACTGTAGTCTTCGTTGTAGGACCTTCGGCCACGGCAACCGGCGTTTCTCTTACATAGCTCGGAATTTATGTTACAAGCATAATAGGATTACTGTAGGGTTACTGTAGTTTGGAATTTTGAAGTACAATTCAAAGTTTTGTCTATTTTTTGAAGATTTCCTGGCGGAATTGAAGGACTAAACGCGAAATTATTTCTATAAAACTAATATTTCAACGATTTCGATGTGTTTAGAAGTYTTTATTTTCTAGTTTCCAATTCGAATTTATAAACAAATTCAGTCAAAATTTCCAATAACTTGACTTCTTCTTCTTCTCCTTTTTGTTTCCTCCCTATTACTTACCTTTCGATGCGAAATTTGAAGCCGTCCGTCCAGCGATCGTGGAATCGTCACGCATTCGGTTTTTTGTTGTCCTTGACACTGAAAATTTTCACTTTCTTCTAGGTAATATTGATTCTAGAAGATTCAGAGTCTAAAATTAACATAGTTCCTCTAATAGAAGCCCACTTTGAGCTCAATTATCTCTGTTCCTATGAGAGATATCAAAAATTTGTCAACTAAAAAAATGCGGCTGATAATATCAGAAACATTTTATCAGTTGACAGATTTTTGATGTCTTTCATTGGAGCCGAGGTAATTGAGATCAAAGATGACGGTTTAGACCGTCCAAATTGAGCTAAATTATCTGGGTTCCTGTAAAAGATATCAAAATTTCGTGAGCTGATAAAATTTAGCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGGTTACTGTAGTTTGGAATTT</pcr_primer_p1>
		<pcr_primer_p2>AGGTAAGTAATAGGGAGGAAACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGGGTTACTGTAGTTTGGAATTTTGAAGTACAATTCAAAGTTTTGTCTATTTTTTGAAGATTTCCTGGCGGAATTGAAGGACTAAACGCGAAATTATTTCTATAAAACTAATATTTCAACGATTTCGATGTGTTTAGAAGTCTTTATTTTCTAGTTTCCAATTCGAATTTATAAACAAATTCAGTCAAAATTTCCAATAACTTGACTTCTTCTTCTTCTCCTTTTTGTTTCCTCCCTATTACTTACCT</canonical_amplicon>
		<polymorphic_amplicon>AGGGTTACTGTAGTTTGGAATTTTGAAGTACAATTCAAAGTTTTGTCTATTTTTTGAAGATTTCCTGGCGGAATTGAAGGACTAAACGCGAAATTATTTCTATAAAACTAATATTTCAACGATTTCGATGTGTTTAGAAGTYTTTATTTTCTAGTTTCCAATTCGAATTTATAAACAAATTCAGTCAAAATTTCCAATAACTTGACTTCTTCTTCTTCTCCTTTTTGTTTCCTCCCTATTACTTACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27240</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>372637</contig_pos>
        <strand>+</strand>
        <context>TTTAGAAGTY[C/T]TTATTTTCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTATTTCTATAAAACTAATATTTCAACGATTTCGATGTGTTTAGAAGTC</left_flank>
        <right_flank>TTATTTTCTAGTTTCCAATTCGAATTTATAAACAAATTCAGTCAAAATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACATCTGAGGTGGTGGAAGAGAAACGAAGGTCCCACAACAAAAACCACAGTAACCTGAAAATATTCTTATTTTCAGAGTTTTTCTCGTTTTTCACTGATTTCGTCTGTTTTTCGGTAGTTTTTCTTCAAAAATATTGAAAAAATAAAAAATTTTTGGTGTTCTCTCGTTTTCTGTCAAATCTCGACAAATTTTTGAAGGAAAAGTTACACAAAAATCAGTGAAAATCGAGAAAATTCAGAAAACAAAATTATTTTTAGGTTACTGTAGTCTTCGTTGTAGGACCTTCGGCCACGGCAACCGGCGTTTCTCTTACATAGCTCGGAATTTATGTTACAAGCATAATAGGATTACTGTAGGGTTACTGTAGTTTGGAATTTTGAAGTACAATTCAAAGTTTTGTCTATTTTTTGAAGATTTCCTGGCGGAATTGAAGGACTAAACGCGAAATTATTTCTATAAAACTAATATTTCAACGATTTCGATGTGTTTAGAAGTCTTTATTTTCTAGTTTCCAATTCGAATTTATAAACAAATTCAGTCAAAATTTCCAATAACTTGACTTCTTCTTCTTCTCCTTTTTGTTTCCTCCCTATTACTTACCTTTCGATGCGAAATTTGAAGCCGTCCGTCCAGCGATCGTGGAATCGTCACGCATTCGGTTTTTTGTTGTCCTTGACACTGAAAATTTTCACTTTCTTCTAGGTAATATTGATTCTAGAAGATTCAGAGTCTAAAATTAACATAGTTCCTCTAATAGAAGCCCACTTTGAGCTCAATTATCTCTGTTCCTATGAGAGATATCAAAAATTTGTCAACTAAAAAAATGCGGCTGATAATATCAGAAACATTTTATCAGTTGACAGATTTTTGATGTCTTTCATTGGAGCCGAGGTAATTGAGATCAAAGATGACGGTTTAGACCGTCCAAATTGAGCTAAATTATCTGGGTTCCTGTAAAAGATATCAAAATTTCGTGAGCTGATAAAATTTAGCTGAT</canonical>
            <polymorphic>AAACATCTGAGGTGGTGGAAGAGAAACGAAGGTCCCACAACAAAAACCACAGTAACCTGAAAATATTCTTATTTTCAGAGTTTTTCTCGTTTTTCACTGATTTCGTCTGTTTTTCGGTAGTTTTTCTTCAAAAATATTGAAAAAATAAAAAATTTTTGGTGTTCTCTCGTTTTCTGTCAAATCTCGACAAATTTTTGAAGGAAAAGTTACACAAAAATCAGTGAAAATCGAGAAAATTCAGAAAACAAAATTATTTTTAGGTTACTGTAGTCTTCGTTGTAGGACCTTCGGCCACGGCAACCGGCGTTTCTCTTACATAGCTCGGAATTTATGTTACAAGCATAATAGGATTACTGTAGGGTTACTGTAGTTTGGAATTTTGAAGTACAATTCAAAGTTTTGTCTATTTTTTGAAGATTTCCTGGCGGAATTGAAGGACTAAACGCGAAATTATTTCTATAAAACTAATATTTCAACGATTTCGATGTGTTTAGAAGTCYTTATTTTCTAGTTTCCAATTCGAATTTATAAACAAATTCAGTCAAAATTTCCAATAACTTGACTTCTTCTTCTTCTCCTTTTTGTTTCCTCCCTATTACTTACCTTTCGATGCGAAATTTGAAGCCGTCCGTCCAGCGATCGTGGAATCGTCACGCATTCGGTTTTTTGTTGTCCTTGACACTGAAAATTTTCACTTTCTTCTAGGTAATATTGATTCTAGAAGATTCAGAGTCTAAAATTAACATAGTTCCTCTAATAGAAGCCCACTTTGAGCTCAATTATCTCTGTTCCTATGAGAGATATCAAAAATTTGTCAACTAAAAAAATGCGGCTGATAATATCAGAAACATTTTATCAGTTGACAGATTTTTGATGTCTTTCATTGGAGCCGAGGTAATTGAGATCAAAGATGACGGTTTAGACCGTCCAAATTGAGCTAAATTATCTGGGTTCCTGTAAAAGATATCAAAATTTCGTGAGCTGATAAAATTTAGCTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGGTTACTGTAGTTTGGAATTT</pcr_primer_p1>
		<pcr_primer_p2>AGGTAAGTAATAGGGAGGAAACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGGGTTACTGTAGTTTGGAATTTTGAAGTACAATTCAAAGTTTTGTCTATTTTTTGAAGATTTCCTGGCGGAATTGAAGGACTAAACGCGAAATTATTTCTATAAAACTAATATTTCAACGATTTCGATGTGTTTAGAAGTCTTTATTTTCTAGTTTCCAATTCGAATTTATAAACAAATTCAGTCAAAATTTCCAATAACTTGACTTCTTCTTCTTCTCCTTTTTGTTTCCTCCCTATTACTTACCT</canonical_amplicon>
		<polymorphic_amplicon>AGGGTTACTGTAGTTTGGAATTTTGAAGTACAATTCAAAGTTTTGTCTATTTTTTGAAGATTTCCTGGCGGAATTGAAGGACTAAACGCGAAATTATTTCTATAAAACTAATATTTCAACGATTTCGATGTGTTTAGAAGTCYTTATTTTCTAGTTTCCAATTCGAATTTATAAACAAATTCAGTCAAAATTTCCAATAACTTGACTTCTTCTTCTTCTCCTTTTTGTTTCCTCCCTATTACTTACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27241</snp_id>
        <super_contig>c003000936.Contig4</super_contig>
        <contig_pos>375267</contig_pos>
        <strand></strand>
        <context>gtacccgtgg[T/C]cgaaggtccc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCTGTACTATAAACCCAGAGCTATGGAAGAGAGGCGTCGGTACCCGTGG</left_flank>
        <right_flank>CGAAGGTCCCACAACGGCAACTAACGTAACCCGAAAATATTTTTAATTTC</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTCGGAGCTCTAATTATTGTCAAATGTATAGAATTTCAAAAACTTTTTTCAATTTTTTGTATAATTTAGAATTGGTTCAGTTTTCTTAGTTTCTGAATTCTAAAACTTTGACTTTTCGAATTTTCCCGAAGTTCAGAAATTCTGAATTCTGAAAAAAAAATTGCATGTTTCAAAAGTTTAGAAATTCGAAGTTTAGAAAGAGATTCAGAATTTTTTGAAATATCCGACATTCTAAGACCCAGCAAAACTGTAATTATAATTTTCGAAAACATCTTTAAAACTTTTTTTCGATTTCAAATTTTGTTAATTCTCTCGGATTACTGTATTTTACTGTAGTTTATTGTTGTTTGTAATATTTTAGCTTATTGTAGATTACTGTAGTTTAGTTTTTAAATGTTCCCGATACAGTTTTCTCCAAAAATCATAATATTAGTATTATCATATTTTTTCTGTACTATAAACCCAGAGCTATGGAAGAGAGGCGTCGGTACCCGTGGTCGAAGGTCCCACAACGGCAACTAACGTAACCCGAAAATATTTTTAATTTCCGGATTTTTTTTTTCGTTTTTCACTTTTTTCAGTCAATTTCGCGATGTACAAATATTTTTATTTCCCGACTTGTGAGCAAAAATAACAAAAATAATCAGTGAAAATCGATTAAAAATCCGGAAATTTATTTAGGTTACTGTAGTTGTCGTTGTGGGACCTTTGGCCACGAACACCGATATTTCTCTTCCACGATTTTCAACAGAAAATCTATTGGAAAAAAGTGAAAAGTAAACTACAGTAATCCTCCACAGTTCCTGCGAAATCGGGCTAATTTGAGAGAAATTCGAAGCATTTAAGTTCTTAAAAATAAATAAAACATCTAAAAGGTTTCAGAAATCATAAAAATACAATTTATCTGAATTTTAGAATCTCAAATTTCTGAATTTTGAGTTTCTGAAATTCTGAAAAAATTAAAATTTTAGAATTCAGAATCTGTGAAATTCTAAACT</canonical>
            <polymorphic>GTTTCGGAGCTCTAATTATTGTCAAATGTATAGAATTTCAAAAACTTTTTTCAATTTTTTGTATAATTTAGAATTGGTTCAGTTTTCTTAGTTTCTGAATTCTAAAACTTTGACTTTTCGAATTTTCCCGAAGTTCAGAAATTCTGAATTCTGAAAAAAAAATTGCATGTTTCAAAAGTTTAGAAATTCGAAGTTTAGAAAGAGATTCAGAATTTTTTGAAATATCCGACATTCTAAGACCCAGCAAAACTGTAATTATAATTTTCGAAAACATCTTTAAAACTTTTTTTCGATTTCAAATTTTGTTAATTCTCTCGGATTACTGTATTTTACTGTAGTTTATTGTTGTTTGTAATATTTTAGCTTATTGTAGATTACTGTAGTTTAGTTTTTAAATGTTCCCGATACAGTTTTCTCCAAAAATCATAATATTAGTATTATCATATTTTTTCTGTACTATAAACCCAGAGCTATGGAAGAGAGGCGTCGGTACCCGTGGYCGAAGGTCCCACAACGGCAACTAACGTAACCCGAAAATATTTTTAATTTCCGGATTTTTTTTTTCGTTTTTCACTTTTTTCAGTCAATTTCGCGATGTACAAATATTTTTATTTCCCGACTTGTGAGCAAAAATAACAAAAATAATCAGTGAAAATCGATTAAAAATCCGGAAATTTATTTAGGTTACTGTAGTTGTCGTTGTGGGACCTTTGGCCACGAACACCGATATTTCTCTTCCACGATTTTCAACAGAAAATCTATTGGAAAAAAGTGAAAAGTAAACTACAGTAATCCTCCACAGTTCCTGCGAAATCGGGCTAATTTGAGAGAAATTCGAAGCATTTAAGTTCTTAAAAATAAATAAAACATCTAAAAGGTTTCAGAAATCATAAAAATACAATTTATCTGAATTTTAGAATCTCAAATTTCTGAATTTTGAGTTTCTGAAATTCTGAAAAAATTAAAATTTTAGAATTCAGAATCTGTGAAATTCTAAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>210 179 164 156 119 77 70 25</canonical_bands>
                <polymorphic_bands>366 179 164 119 77 70 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGTTTTCTCCAAAAATCATAA</pcr_primer_p1>
		<pcr_primer_p2>TGGAGGATTACTGTAGTTTACTTTT</pcr_primer_p2>
		<pcr_amplicon_size>393</pcr_amplicon_size>
		<canonical_amplicon>ACAGTTTTCTCCAAAAATCATAATATTAGTATTATCATATTTTTTCTGTACTATAAACCCAGAGCTATGGAAGAGAGGCGTCGGTACCCGTGGTCGAAGGTCCCACAACGGCAACTAACGTAACCCGAAAATATTTTTAATTTCCGGATTTTTTTTTTCGTTTTTCACTTTTTTCAGTCAATTTCGCGATGTACAAATATTTTTATTTCCCGACTTGTGAGCAAAAATAACAAAAATAATCAGTGAAAATCGATTAAAAATCCGGAAATTTATTTAGGTTACTGTAGTTGTCGTTGTGGGACCTTTGGCCACGAACACCGATATTTCTCTTCCACGATTTTCAACAGAAAATCTATTGGAAAAAAGTGAAAAGTAAACTACAGTAATCCTCCA</canonical_amplicon>
		<polymorphic_amplicon>ACAGTTTTCTCCAAAAATCATAATATTAGTATTATCATATTTTTTCTGTACTATAAACCCAGAGCTATGGAAGAGAGGCGTCGGTACCCGTGGYCGAAGGTCCCACAACGGCAACTAACGTAACCCGAAAATATTTTTAATTTCCGGATTTTTTTTTTCGTTTTTCACTTTTTTCAGTCAATTTCGCGATGTACAAATATTTTTATTTCCCGACTTGTGAGCAAAAATAACAAAAATAATCAGTGAAAATCGATTAAAAATCCGGAAATTTATTTAGGTTACTGTAGTTGTCGTTGTGGGACCTTTGGCCACGAACACCGATATTTCTCTTCCACGATTTTCAACAGAAAATCTATTGGAAAAAAGTGAAAAGTAAACTACAGTAATCCTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27242</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>147645</contig_pos>
        <strand></strand>
        <context>aaatcagcaa[T/A]gcaagataaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAATAGAGCTTTAGTTTGGAATTCACAACATTCTTGTAGGAAATCAGCAA</left_flank>
        <right_flank>GCAAGATAAATGGTTTCAAAGTTGCTCAACTATCCATTCAGTGCTAATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATGACACGAAACAGAAAAAAGATCAGAAAGGTGTAAAATGATGGGTTATTGTAACATTTGGGTTGTAGTTTTGGAAAACAGAGGACCAGAAAACAACTGAAGAAAAAATCAAAATCGAAGGTTTGAAGAGTACATTTCGAGCTTTCTTGGTATGCCAACATTTTTATAAATATTTTAATCATGGGGCTCCATTTTTTGTAGTTGACAACTTTTTGATTCAAACTCATCCTTGAAATCTTGAAATTATAAGGGTCGAGATCAAAGAAATTACAACTAGAAATAAATAGAAAATTGAGTAATTACAGGCACATTTTTGATGCCATAAGGACAGTACCGGACGAAAAATATAGACATGTTTGAACTTTTTCAATAGAACAACTATGAAATCCTGAAAAAGTAATTTATAATGTTTTGATTTGTCTGAAAATGTTTGAGCATACTAAACTAAAATAGAGCTTTAGTTTGGAATTCACAACATTCTTGTAGGAAATCAGCAATGCAAGATAAATGGTTTCAAAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACT</canonical>
            <polymorphic>ACATGACACGAAACAGAAAAAAGATCAGAAAGGTGTAAAATGATGGGTTATTGTAACATTTGGGTTGTAGTTTTGGAAAACAGAGGACCAGAAAACAACTGAAGAAAAAATCAAAATCGAAGGTTTGAAGAGTACATTTCGAGCTTTCTTGGTATGCCAACATTTTTATAAATATTTTAATCATGGGGCTCCATTTTTTGTAGTTGACAACTTTTTGATTCAAACTCATCCTTGAAATCTTGAAATTATAAGGGTCGAGATCAAAGAAATTACAACTAGAAATAAATAGAAAATTGAGTAATTACAGGCACATTTTTGATGCCATAAGGACAGTACCGGACGAAAAATATAGACATGTTTGAACTTTTTCAATAGAACAACTATGAAATCCTGAAAAAGTAATTTATAATGTTTTGATTTGTCTGAAAATGTTTGAGCATACTAAACTAAAATAGAGCTTTAGTTTGGAATTCACAACATTCTTGTAGGAAATCAGCAAWGCAAGATAAATGGTTTCAAAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>501 274 162 44 19</canonical_bands>
                <polymorphic_bands>775 162 44 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCAATAGAACAACTATGAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATAGTCAGATTCTCAGTCCA</pcr_primer_p2>
		<pcr_amplicon_size>356</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCAATAGAACAACTATGAAATCCTGAAAAAGTAATTTATAATGTTTTGATTTGTCTGAAAATGTTTGAGCATACTAAACTAAAATAGAGCTTTAGTTTGGAATTCACAACATTCTTGTAGGAAATCAGCAATGCAAGATAAATGGTTTCAAAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCAATAGAACAACTATGAAATCCTGAAAAAGTAATTTATAATGTTTTGATTTGTCTGAAAATGTTTGAGCATACTAAACTAAAATAGAGCTTTAGTTTGGAATTCACAACATTCTTGTAGGAAATCAGCAAWGCAAGATAAATGGTTTCAAAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27243</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>147714</contig_pos>
        <strand></strand>
        <context>tttctggtta[C/T]aagtggtata</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTA</left_flank>
        <right_flank>AAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTGGAAAACAGAGGACCAGAAAACAACTGAAGAAAAAATCAAAATCGAAGGTTTGAAGAGTACATTTCGAGCTTTCTTGGTATGCCAACATTTTTATAAATATTTTAATCATGGGGCTCCATTTTTTGTAGTTGACAACTTTTTGATTCAAACTCATCCTTGAAATCTTGAAATTATAAGGGTCGAGATCAAAGAAATTACAACTAGAAATAAATAGAAAATTGAGTAATTACAGGCACATTTTTGATGCCATAAGGACAGTACCGGACGAAAAATATAGACATGTTTGAACTTTTTCAATAGAACAACTATGAAATCCTGAAAAAGTAATTTATAATGTTTTGATTTGTCTGAAAATGTTTGAGCATACTAAACTAAAATAGAGCTTTAGTTTGGAATTCACAACATTCTTGTAGGAAATCAGCAATGCAAGATAAATGGTTTCAAAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTT</canonical>
            <polymorphic>GTTTTGGAAAACAGAGGACCAGAAAACAACTGAAGAAAAAATCAAAATCGAAGGTTTGAAGAGTACATTTCGAGCTTTCTTGGTATGCCAACATTTTTATAAATATTTTAATCATGGGGCTCCATTTTTTGTAGTTGACAACTTTTTGATTCAAACTCATCCTTGAAATCTTGAAATTATAAGGGTCGAGATCAAAGAAATTACAACTAGAAATAAATAGAAAATTGAGTAATTACAGGCACATTTTTGATGCCATAAGGACAGTACCGGACGAAAAATATAGACATGTTTGAACTTTTTCAATAGAACAACTATGAAATCCTGAAAAAGTAATTTATAATGTTTTGATTTGTCTGAAAATGTTTGAGCATACTAAACTAAAATAGAGCTTTAGTTTGGAATTCACAACATTCTTGTAGGAAATCAGCAATGCAAGATAAATGGTTTCAAAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTAYAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>495 424 81</canonical_bands>
                <polymorphic_bands>576 424</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCAATAGAACAACTATGAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATAGTCAGATTCTCAGTCCA</pcr_primer_p2>
		<pcr_amplicon_size>356</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCAATAGAACAACTATGAAATCCTGAAAAAGTAATTTATAATGTTTTGATTTGTCTGAAAATGTTTGAGCATACTAAACTAAAATAGAGCTTTAGTTTGGAATTCACAACATTCTTGTAGGAAATCAGCAATGCAAGATAAATGGTTTCAAAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCAATAGAACAACTATGAAATCCTGAAAAAGTAATTTATAATGTTTTGATTTGTCTGAAAATGTTTGAGCATACTAAACTAAAATAGAGCTTTAGTTTGGAATTCACAACATTCTTGTAGGAAATCAGCAATGCAAGATAAATGGTTTCAAAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTAYAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27244</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>147775</contig_pos>
        <strand></strand>
        <context>cagaaatgaa[T/A]ctcgaatttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAA</left_flank>
        <right_flank>CTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTACATTTCGAGCTTTCTTGGTATGCCAACATTTTTATAAATATTTTAATCATGGGGCTCCATTTTTTGTAGTTGACAACTTTTTGATTCAAACTCATCCTTGAAATCTTGAAATTATAAGGGTCGAGATCAAAGAAATTACAACTAGAAATAAATAGAAAATTGAGTAATTACAGGCACATTTTTGATGCCATAAGGACAGTACCGGACGAAAAATATAGACATGTTTGAACTTTTTCAATAGAACAACTATGAAATCCTGAAAAAGTAATTTATAATGTTTTGATTTGTCTGAAAATGTTTGAGCATACTAAACTAAAATAGAGCTTTAGTTTGGAATTCACAACATTCTTGTAGGAAATCAGCAATGCAAGATAAATGGTTTCAAAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAA</canonical>
            <polymorphic>AGTACATTTCGAGCTTTCTTGGTATGCCAACATTTTTATAAATATTTTAATCATGGGGCTCCATTTTTTGTAGTTGACAACTTTTTGATTCAAACTCATCCTTGAAATCTTGAAATTATAAGGGTCGAGATCAAAGAAATTACAACTAGAAATAAATAGAAAATTGAGTAATTACAGGCACATTTTTGATGCCATAAGGACAGTACCGGACGAAAAATATAGACATGTTTGAACTTTTTCAATAGAACAACTATGAAATCCTGAAAAAGTAATTTATAATGTTTTGATTTGTCTGAAAATGTTTGAGCATACTAAACTAAAATAGAGCTTTAGTTTGGAATTCACAACATTCTTGTAGGAAATCAGCAATGCAAGATAAATGGTTTCAAAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAAWCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>424 410 87 79</canonical_bands>
                <polymorphic_bands>489 424 87</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>499 241 134 109 17</canonical_bands>
                <polymorphic_bands>740 134 109 17</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>424 410 87 79</canonical_bands>
                <polymorphic_bands>489 424 87</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCAATAGAACAACTATGAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATAGTCAGATTCTCAGTCCA</pcr_primer_p2>
		<pcr_amplicon_size>356</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCAATAGAACAACTATGAAATCCTGAAAAAGTAATTTATAATGTTTTGATTTGTCTGAAAATGTTTGAGCATACTAAACTAAAATAGAGCTTTAGTTTGGAATTCACAACATTCTTGTAGGAAATCAGCAATGCAAGATAAATGGTTTCAAAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCAATAGAACAACTATGAAATCCTGAAAAAGTAATTTATAATGTTTTGATTTGTCTGAAAATGTTTGAGCATACTAAACTAAAATAGAGCTTTAGTTTGGAATTCACAACATTCTTGTAGGAAATCAGCAATGCAAGATAAATGGTTTCAAAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAAWCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27245</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>147824</contig_pos>
        <strand></strand>
        <context>caatggaaaa[A/T]atctgaaart</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAA</left_flank>
        <right_flank>ATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCATGGGGCTCCATTTTTTGTAGTTGACAACTTTTTGATTCAAACTCATCCTTGAAATCTTGAAATTATAAGGGTCGAGATCAAAGAAATTACAACTAGAAATAAATAGAAAATTGAGTAATTACAGGCACATTTTTGATGCCATAAGGACAGTACCGGACGAAAAATATAGACATGTTTGAACTTTTTCAATAGAACAACTATGAAATCCTGAAAAAGTAATTTATAATGTTTTGATTTGTCTGAAAATGTTTGAGCATACTAAACTAAAATAGAGCTTTAGTTTGGAATTCACAACATTCTTGTAGGAAATCAGCAATGCAAGATAAATGGTTTCAAAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTCTGATGATTTCCAAAGATATGTGCATACTCT</canonical>
            <polymorphic>ATCATGGGGCTCCATTTTTTGTAGTTGACAACTTTTTGATTCAAACTCATCCTTGAAATCTTGAAATTATAAGGGTCGAGATCAAAGAAATTACAACTAGAAATAAATAGAAAATTGAGTAATTACAGGCACATTTTTGATGCCATAAGGACAGTACCGGACGAAAAATATAGACATGTTTGAACTTTTTCAATAGAACAACTATGAAATCCTGAAAAAGTAATTTATAATGTTTTGATTTGTCTGAAAATGTTTGAGCATACTAAACTAAAATAGAGCTTTAGTTTGGAATTCACAACATTCTTGTAGGAAATCAGCAATGCAAGATAAATGGTTTCAAAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAWATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTCTGATGATTTCCAAAGATATGTGCATACTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCAATAGAACAACTATGAAATC</pcr_primer_p1>
		<pcr_primer_p2>GAACGGTATGATATTTTGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>389</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCAATAGAACAACTATGAAATCCTGAAAAAGTAATTTATAATGTTTTGATTTGTCTGAAAATGTTTGAGCATACTAAACTAAAATAGAGCTTTAGTTTGGAATTCACAACATTCTTGTAGGAAATCAGCAATGCAAGATAAATGGTTTCAAAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCAATAGAACAACTATGAAATCCTGAAAAAGTAATTTATAATGTTTTGATTTGTCTGAAAATGTTTGAGCATACTAAACTAAAATAGAGCTTTAGTTTGGAATTCACAACATTCTTGTAGGAAATCAGCAATGCAAGATAAATGGTTTCAAAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAWATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27246</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>147943</contig_pos>
        <strand></strand>
        <context>TGATAATact[T/G]taaaacctgt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACT</left_flank>
        <right_flank>TAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAA</right_flank>
        <qual_score>46</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATTACAGGCACATTTTTGATGCCATAAGGACAGTACCGGACGAAAAATATAGACATGTTTGAACTTTTTCAATAGAACAACTATGAAATCCTGAAAAAGTAATTTATAATGTTTTGATTTGTCTGAAAATGTTTGAGCATACTAAACTAAAATAGAGCTTTAGTTTGGAATTCACAACATTCTTGTAGGAAATCAGCAATGCAAGATAAATGGTTTCAAAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTCTGATGATTTCCAAAGATATGTGCATACTCTCTTTTTATTATTCTTGCTCTGTCAGATCATCAATTATCTAATAAAGTTCATTAACTCATCGGCATCTTCTTTTTTCAATGTCTCCATCGAACTCCCATACCCCATTTTCCATCCATCAA</canonical>
            <polymorphic>TAATTACAGGCACATTTTTGATGCCATAAGGACAGTACCGGACGAAAAATATAGACATGTTTGAACTTTTTCAATAGAACAACTATGAAATCCTGAAAAAGTAATTTATAATGTTTTGATTTGTCTGAAAATGTTTGAGCATACTAAACTAAAATAGAGCTTTAGTTTGGAATTCACAACATTCTTGTAGGAAATCAGCAATGCAAGATAAATGGTTTCAAAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTKTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTCTGATGATTTCCAAAGATATGTGCATACTCTCTTTTTATTATTCTTGCTCTGTCAGATCATCAATTATCTAATAAAGTTCATTAACTCATCGGCATCTTCTTTTTTCAATGTCTCCATCGAACTCCCATACCCCATTTTCCATCCATCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 373 126</canonical_bands>
                <polymorphic_bands>627 373</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>500 134 130 95 68 42 31</canonical_bands>
                <polymorphic_bands>531 134 130 95 68 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATATCATACCGTTCTGTCC</pcr_primer_p1>
		<pcr_primer_p2>GATAATTGTATTCGAATTTTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>358</pcr_amplicon_size>
		<canonical_amplicon>AAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATC</canonical_amplicon>
		<polymorphic_amplicon>AAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTKTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27247</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>148008</contig_pos>
        <strand></strand>
        <context>tctctgtttc[T/A]gtaaaagtta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTC</left_flank>
        <right_flank>GTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTTCAATAGAACAACTATGAAATCCTGAAAAAGTAATTTATAATGTTTTGATTTGTCTGAAAATGTTTGAGCATACTAAACTAAAATAGAGCTTTAGTTTGGAATTCACAACATTCTTGTAGGAAATCAGCAATGCAAGATAAATGGTTTCAAAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTCTGATGATTTCCAAAGATATGTGCATACTCTCTTTTTATTATTCTTGCTCTGTCAGATCATCAATTATCTAATAAAGTTCATTAACTCATCGGCATCTTCTTTTTTCAATGTCTCCATCGAACTCCCATACCCCATTTTCCATCCATCAATCAATCGAGATATTCCTGCGCAGAAAAAGACAACAGTTGCTCTGTGTCTGAGGAGCGGCTCCCTT</canonical>
            <polymorphic>CTTTTTCAATAGAACAACTATGAAATCCTGAAAAAGTAATTTATAATGTTTTGATTTGTCTGAAAATGTTTGAGCATACTAAACTAAAATAGAGCTTTAGTTTGGAATTCACAACATTCTTGTAGGAAATCAGCAATGCAAGATAAATGGTTTCAAAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCWGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTCTGATGATTTCCAAAGATATGTGCATACTCTCTTTTTATTATTCTTGCTCTGTCAGATCATCAATTATCTAATAAAGTTCATTAACTCATCGGCATCTTCTTTTTTCAATGTCTCCATCGAACTCCCATACCCCATTTTCCATCCATCAATCAATCGAGATATTCCTGCGCAGAAAAAGACAACAGTTGCTCTGTGTCTGAGGAGCGGCTCCCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTCCGGTATTGTACATCTTT</pcr_primer_p1>
		<pcr_primer_p2>GATAATTGTATTCGAATTTTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>CTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATC</canonical_amplicon>
		<polymorphic_amplicon>CTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCWGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27248</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>148147</contig_pos>
        <strand></strand>
        <context>gggtggactt[C/T]cattYGAGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTT</left_flank>
        <right_flank>CATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGATAAATGGTTTCAAAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTCTGATGATTTCCAAAGATATGTGCATACTCTCTTTTTATTATTCTTGCTCTGTCAGATCATCAATTATCTAATAAAGTTCATTAACTCATCGGCATCTTCTTTTTTCAATGTCTCCATCGAACTCCCATACCCCATTTTCCATCCATCAATCAATCGAGATATTCCTGCGCAGAAAAAGACAACAGTTGCTCTGTGTCTGAGGAGCGGCTCCCTTTTGAGCTCTCATTTAAATGACCAATTGAAGTTTCGCCGAGTTTATAAACTGAGAAAAGGGAAGAAGAGGAAAATGAGTCAACACGTGTTGGGCACCCGATAATTTATATGCATGGCACTAGGTCTCTGTCTGTCAGGAA</canonical>
            <polymorphic>AAGATAAATGGTTTCAAAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTYCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTCTGATGATTTCCAAAGATATGTGCATACTCTCTTTTTATTATTCTTGCTCTGTCAGATCATCAATTATCTAATAAAGTTCATTAACTCATCGGCATCTTCTTTTTTCAATGTCTCCATCGAACTCCCATACCCCATTTTCCATCCATCAATCAATCGAGATATTCCTGCGCAGAAAAAGACAACAGTTGCTCTGTGTCTGAGGAGCGGCTCCCTTTTGAGCTCTCATTTAAATGACCAATTGAAGTTTCGCCGAGTTTATAAACTGAGAAAAGGGAAGAAGAGGAAAATGAGTCAACACGTGTTGGGCACCCGATAATTTATATGCATGGCACTAGGTCTCTGTCTGTCAGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTCCGGTATTGTACATCTTT</pcr_primer_p1>
		<pcr_primer_p2>GATAATTGTATTCGAATTTTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>CTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATC</canonical_amplicon>
		<polymorphic_amplicon>CTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTYCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27249</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>148152</contig_pos>
        <strand></strand>
        <context>gacttycatt[T/C]GAGCAAGTGY</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATT</left_flank>
        <right_flank>GAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGGTTTCAAAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTCTGATGATTTCCAAAGATATGTGCATACTCTCTTTTTATTATTCTTGCTCTGTCAGATCATCAATTATCTAATAAAGTTCATTAACTCATCGGCATCTTCTTTTTTCAATGTCTCCATCGAACTCCCATACCCCATTTTCCATCCATCAATCAATCGAGATATTCCTGCGCAGAAAAAGACAACAGTTGCTCTGTGTCTGAGGAGCGGCTCCCTTTTGAGCTCTCATTTAAATGACCAATTGAAGTTTCGCCGAGTTTATAAACTGAGAAAAGGGAAGAAGAGGAAAATGAGTCAACACGTGTTGGGCACCCGATAATTTATATGCATGGCACTAGGTCTCTGTCTGTCAGGAATAAAA</canonical>
            <polymorphic>AAATGGTTTCAAAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTYGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTCTGATGATTTCCAAAGATATGTGCATACTCTCTTTTTATTATTCTTGCTCTGTCAGATCATCAATTATCTAATAAAGTTCATTAACTCATCGGCATCTTCTTTTTTCAATGTCTCCATCGAACTCCCATACCCCATTTTCCATCCATCAATCAATCGAGATATTCCTGCGCAGAAAAAGACAACAGTTGCTCTGTGTCTGAGGAGCGGCTCCCTTTTGAGCTCTCATTTAAATGACCAATTGAAGTTTCGCCGAGTTTATAAACTGAGAAAAGGGAAGAAGAGGAAAATGAGTCAACACGTGTTGGGCACCCGATAATTTATATGCATGGCACTAGGTCTCTGTCTGTCAGGAATAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTCCGGTATTGTACATCTTT</pcr_primer_p1>
		<pcr_primer_p2>GATAATTGTATTCGAATTTTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>CTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATC</canonical_amplicon>
		<polymorphic_amplicon>CTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTYGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27250</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>148163</contig_pos>
        <strand>+</strand>
        <context>GAGCAAGTGY[C/T]GTATCGTAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGC</left_flank>
        <right_flank>GTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTCTGATGATTTCCAAAGATATGTGCATACTCTCTTTTTATTATTCTTGCTCTGTCAGATCATCAATTATCTAATAAAGTTCATTAACTCATCGGCATCTTCTTTTTTCAATGTCTCCATCGAACTCCCATACCCCATTTTCCATCCATCAATCAATCGAGATATTCCTGCGCAGAAAAAGACAACAGTTGCTCTGTGTCTGAGGAGCGGCTCCCTTTTGAGCTCTCATTTAAATGACCAATTGAAGTTTCGCCGAGTTTATAAACTGAGAAAAGGGAAGAAGAGGAAAATGAGTCAACACGTGTTGGGCACCCGATAATTTATATGCATGGCACTAGGTCTCTGTCTGTCAGGAATAAAAAGTAAGGGAAC</canonical>
            <polymorphic>AAGTTGCTCAACTATCCATTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCYGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTCTGATGATTTCCAAAGATATGTGCATACTCTCTTTTTATTATTCTTGCTCTGTCAGATCATCAATTATCTAATAAAGTTCATTAACTCATCGGCATCTTCTTTTTTCAATGTCTCCATCGAACTCCCATACCCCATTTTCCATCCATCAATCAATCGAGATATTCCTGCGCAGAAAAAGACAACAGTTGCTCTGTGTCTGAGGAGCGGCTCCCTTTTGAGCTCTCATTTAAATGACCAATTGAAGTTTCGCCGAGTTTATAAACTGAGAAAAGGGAAGAAGAGGAAAATGAGTCAACACGTGTTGGGCACCCGATAATTTATATGCATGGCACTAGGTCTCTGTCTGTCAGGAATAAAAAGTAAGGGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTCCGGTATTGTACATCTTT</pcr_primer_p1>
		<pcr_primer_p2>GATAATTGTATTCGAATTTTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>CTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATC</canonical_amplicon>
		<polymorphic_amplicon>CTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCYGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27251</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>148181</contig_pos>
        <strand>+</strand>
        <context>AATTGCTCAA[A/T]KGGTATGGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAA</left_flank>
        <right_flank>TGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTCTGATGATTTCCAAAGATATGTGCATACTCTCTTTTTATTATTCTTGCTCTGTCAGATCATCAATTATCTAATAAAGTTCATTAACTCATCGGCATCTTCTTTTTTCAATGTCTCCATCGAACTCCCATACCCCATTTTCCATCCATCAATCAATCGAGATATTCCTGCGCAGAAAAAGACAACAGTTGCTCTGTGTCTGAGGAGCGGCTCCCTTTTGAGCTCTCATTTAAATGACCAATTGAAGTTTCGCCGAGTTTATAAACTGAGAAAAGGGAAGAAGAGGAAAATGAGTCAACACGTGTTGGGCACCCGATAATTTATATGCATGGCACTAGGTCTCTGTCTGTCAGGAATAAAAAGTAAGGGAACGAAAACTTCAGGGACATC</canonical>
            <polymorphic>TTCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAWTGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTCTGATGATTTCCAAAGATATGTGCATACTCTCTTTTTATTATTCTTGCTCTGTCAGATCATCAATTATCTAATAAAGTTCATTAACTCATCGGCATCTTCTTTTTTCAATGTCTCCATCGAACTCCCATACCCCATTTTCCATCCATCAATCAATCGAGATATTCCTGCGCAGAAAAAGACAACAGTTGCTCTGTGTCTGAGGAGCGGCTCCCTTTTGAGCTCTCATTTAAATGACCAATTGAAGTTTCGCCGAGTTTATAAACTGAGAAAAGGGAAGAAGAGGAAAATGAGTCAACACGTGTTGGGCACCCGATAATTTATATGCATGGCACTAGGTCTCTGTCTGTCAGGAATAAAAAGTAAGGGAACGAAAACTTCAGGGACATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTCCGGTATTGTACATCTTT</pcr_primer_p1>
		<pcr_primer_p2>GATAATTGTATTCGAATTTTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>CTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATC</canonical_amplicon>
		<polymorphic_amplicon>CTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAWTGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27252</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>148182</contig_pos>
        <strand>+</strand>
        <context>ATTGCTCAAW[G/T]GGTATGGAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAA</left_flank>
        <right_flank>GGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTCTGATGATTTCCAAAGATATGTGCATACTCTCTTTTTATTATTCTTGCTCTGTCAGATCATCAATTATCTAATAAAGTTCATTAACTCATCGGCATCTTCTTTTTTCAATGTCTCCATCGAACTCCCATACCCCATTTTCCATCCATCAATCAATCGAGATATTCCTGCGCAGAAAAAGACAACAGTTGCTCTGTGTCTGAGGAGCGGCTCCCTTTTGAGCTCTCATTTAAATGACCAATTGAAGTTTCGCCGAGTTTATAAACTGAGAAAAGGGAAGAAGAGGAAAATGAGTCAACACGTGTTGGGCACCCGATAATTTATATGCATGGCACTAGGTCTCTGTCTGTCAGGAATAAAAAGTAAGGGAACGAAAACTTCAGGGACATCA</canonical>
            <polymorphic>TCAGTGCTAATTTTCGGCACTTTTCTGGTTACAAGTGGTATATCTCATTAGAATGGAATTTGACTGAAAAAGTTGTCAGTTTCAGAAATGAATCTCGAATTTTGATTAGTAACATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAAKGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTCTGATGATTTCCAAAGATATGTGCATACTCTCTTTTTATTATTCTTGCTCTGTCAGATCATCAATTATCTAATAAAGTTCATTAACTCATCGGCATCTTCTTTTTTCAATGTCTCCATCGAACTCCCATACCCCATTTTCCATCCATCAATCAATCGAGATATTCCTGCGCAGAAAAAGACAACAGTTGCTCTGTGTCTGAGGAGCGGCTCCCTTTTGAGCTCTCATTTAAATGACCAATTGAAGTTTCGCCGAGTTTATAAACTGAGAAAAGGGAAGAAGAGGAAAATGAGTCAACACGTGTTGGGCACCCGATAATTTATATGCATGGCACTAGGTCTCTGTCTGTCAGGAATAAAAAGTAAGGGAACGAAAACTTCAGGGACATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTCCGGTATTGTACATCTTT</pcr_primer_p1>
		<pcr_primer_p2>GATAATTGTATTCGAATTTTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>CTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATC</canonical_amplicon>
		<polymorphic_amplicon>CTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAAKGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27253</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>148295</contig_pos>
        <strand>+</strand>
        <context>GGTGGCTCTC[A/T]GATGATTTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTC</left_flank>
        <right_flank>GATGATTTCCAAAGATATGTGCATACTCTCTTTTTATTATTCTTGCTCTG</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTCTGATGATTTCCAAAGATATGTGCATACTCTCTTTTTATTATTCTTGCTCTGTCAGATCATCAATTATCTAATAAAGTTCATTAACTCATCGGCATCTTCTTTTTTCAATGTCTCCATCGAACTCCCATACCCCATTTTCCATCCATCAATCAATCGAGATATTCCTGCGCAGAAAAAGACAACAGTTGCTCTGTGTCTGAGGAGCGGCTCCCTTTTGAGCTCTCATTTAAATGACCAATTGAAGTTTCGCCGAGTTTATAAACTGAGAAAAGGGAAGAAGAGGAAAATGAGTCAACACGTGTTGGGCACCCGATAATTTATATGCATGGCACTAGGTCTCTGTCTGTCAGGAATAAAAAGTAAGGGAACGAAAACTTCAGGGACATCAGGGGGTTCCCAGAGTTTGTGAAAGTGATTATACGGTGATTACATGGTGGCAAAAAGAGGAACGAGAGACAGCTGGACGAGAAGACGAAACTGGATTGCATACACTACTTCTCT</canonical>
            <polymorphic>ATCTAAAAATTTTCGGAGCAATGGAAAAAATCTGAAAGTGATTTTCGTGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTCWGATGATTTCCAAAGATATGTGCATACTCTCTTTTTATTATTCTTGCTCTGTCAGATCATCAATTATCTAATAAAGTTCATTAACTCATCGGCATCTTCTTTTTTCAATGTCTCCATCGAACTCCCATACCCCATTTTCCATCCATCAATCAATCGAGATATTCCTGCGCAGAAAAAGACAACAGTTGCTCTGTGTCTGAGGAGCGGCTCCCTTTTGAGCTCTCATTTAAATGACCAATTGAAGTTTCGCCGAGTTTATAAACTGAGAAAAGGGAAGAAGAGGAAAATGAGTCAACACGTGTTGGGCACCCGATAATTTATATGCATGGCACTAGGTCTCTGTCTGTCAGGAATAAAAAGTAAGGGAACGAAAACTTCAGGGACATCAGGGGGTTCCCAGAGTTTGTGAAAGTGATTATACGGTGATTACATGGTGGCAAAAAGAGGAACGAGAGACAGCTGGACGAGAAGACGAAACTGGATTGCATACACTACTTCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTGAAAAATTCGAATACAA</pcr_primer_p1>
		<pcr_primer_p2>AGGAATATCTCGATTGATTGAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTCTGATGATTTCCAAAGATATGTGCATACTCTCTTTTTATTATTCTTGCTCTGTCAGATCATCAATTATCTAATAAAGTTCATTAACTCATCGGCATCTTCTTTTTTCAATGTCTCCATCGAACTCCCATACCCCATTTTCCATCCATCAATCAATCGAGATATTCCT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTCWGATGATTTCCAAAGATATGTGCATACTCTCTTTTTATTATTCTTGCTCTGTCAGATCATCAATTATCTAATAAAGTTCATTAACTCATCGGCATCTTCTTTTTTCAATGTCTCCATCGAACTCCCATACCCCATTTTCCATCCATCAATCAATCGAGATATTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27254</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>148342</contig_pos>
        <strand>+</strand>
        <context>TTATTCTTGC[A/T]CTGTCAGATC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCTGATGATTTCCAAAGATATGTGCATACTCTCTTTTTATTATTCTTGC</left_flank>
        <right_flank>CTGTCAGATCATCAATTATCTAATAAAGTTCATTAACTCATCGGCATCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTCTGATGATTTCCAAAGATATGTGCATACTCTCTTTTTATTATTCTTGCTCTGTCAGATCATCAATTATCTAATAAAGTTCATTAACTCATCGGCATCTTCTTTTTTCAATGTCTCCATCGAACTCCCATACCCCATTTTCCATCCATCAATCAATCGAGATATTCCTGCGCAGAAAAAGACAACAGTTGCTCTGTGTCTGAGGAGCGGCTCCCTTTTGAGCTCTCATTTAAATGACCAATTGAAGTTTCGCCGAGTTTATAAACTGAGAAAAGGGAAGAAGAGGAAAATGAGTCAACACGTGTTGGGCACCCGATAATTTATATGCATGGCACTAGGTCTCTGTCTGTCAGGAATAAAAAGTAAGGGAACGAAAACTTCAGGGACATCAGGGGGTTCCCAGAGTTTGTGAAAGTGATTATACGGTGATTACATGGTGGCAAAAAGAGGAACGAGAGACAGCTGGACGAGAAGACGAAACTGGATTGCATACACTACTTCTCTTTCTGATGAAATGCCGCAGCAACTTCTCACTCTTTTTTATTGTTCTT</canonical>
            <polymorphic>TGGACTGAGAATCTGACTATTTTATCACTGAAAAAAATCAAAATATCATACCGTTCTGTCCGGTATTGTACATCTTTGCATAACGCATTGTGATAATACTTTAAAACCTGTAATAGAAGGTCCTCCAATTTTTAACTTTGATGTGAGCCAATTTTTCTCTGTTTCTGTAAAAGTTATAAACGAGTTTTGAACTGGTTAGTTATTCGTCATAATATCAGAACTATTTTTAAATTCAATTTGCACATTTTTATATATTTTGCATATGAATTTAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTTGAGCAAGTGCGGTATCGTAATTGCTCAAATGGTATGGAGGTAAATAAAATAACTGAACGTTTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTCTGATGATTTCCAAAGATATGTGCATACTCTCTTTTTATTATTCTTGCWCTGTCAGATCATCAATTATCTAATAAAGTTCATTAACTCATCGGCATCTTCTTTTTTCAATGTCTCCATCGAACTCCCATACCCCATTTTCCATCCATCAATCAATCGAGATATTCCTGCGCAGAAAAAGACAACAGTTGCTCTGTGTCTGAGGAGCGGCTCCCTTTTGAGCTCTCATTTAAATGACCAATTGAAGTTTCGCCGAGTTTATAAACTGAGAAAAGGGAAGAAGAGGAAAATGAGTCAACACGTGTTGGGCACCCGATAATTTATATGCATGGCACTAGGTCTCTGTCTGTCAGGAATAAAAAGTAAGGGAACGAAAACTTCAGGGACATCAGGGGGTTCCCAGAGTTTGTGAAAGTGATTATACGGTGATTACATGGTGGCAAAAAGAGGAACGAGAGACAGCTGGACGAGAAGACGAAACTGGATTGCATACACTACTTCTCTTTCTGATGAAATGCCGCAGCAACTTCTCACTCTTTTTTATTGTTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTGAAAAATTCGAATACAA</pcr_primer_p1>
		<pcr_primer_p2>AGGAATATCTCGATTGATTGAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTCTGATGATTTCCAAAGATATGTGCATACTCTCTTTTTATTATTCTTGCTCTGTCAGATCATCAATTATCTAATAAAGTTCATTAACTCATCGGCATCTTCTTTTTTCAATGTCTCCATCGAACTCCCATACCCCATTTTCCATCCATCAATCAATCGAGATATTCCT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTGAAAAATTCGAATACAATTATCATTAAGACATTTGAGATTACGGTAGCTGAATAAAAACAACAGACAGGTGGCTCTCTGATGATTTCCAAAGATATGTGCATACTCTCTTTTTATTATTCTTGCWCTGTCAGATCATCAATTATCTAATAAAGTTCATTAACTCATCGGCATCTTCTTTTTTCAATGTCTCCATCGAACTCCCATACCCCATTTTCCATCCATCAATCAATCGAGATATTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27255</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>149317</contig_pos>
        <strand></strand>
        <context>ctacccagac[C/T]tttcagtttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGTTTGAATTTATATTTTACGCATTTTCAATATTCCGACTACCCAGAC</left_flank>
        <right_flank>TTTCAGTTTTCAAACTACCGAATTTCAGAACTTTCAAGTTTTCGAATTTC</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCTCACTCTTTTTTATTGTTCTTTGAAAGAGGATTTGTGACAAGTGATTTTAAGTTTTCAAGAAGAGAACACACCTAGTATCTGCCAGGAACACGCCCAACAGAAGTGAGAAAAGAGGGCTTTCATTCACAAGAAGACATTCGATTTCTGAAACTTCTAAAAATTTATGAAGGTTCTTTTCTGTTTTTTTTTGGAATTTGTTTGTTGAGAAGGTAGAAAGGTGATTTTGTGGAAATATTATTTTTGGGTCTTGAAATTTTGAAAAGGAGAAAAAAGTCTGGAAAGGTAAGAATGTTTCCTGGAATTAACTGCGTTTTTAGAACTCTTTGGATTTCATTTTAAGAAATGAATAACTTCAGAAAATTTCTGAACTTCTGAATTTAACCCTCTGAATTTTCAAATCATCATTATTCAGAACTTGAGAAATTGTGAGCTTTCGGAATTCTGAATGTTTGAATTTATATTTTACGCATTTTCAATATTCCGACTACCCAGACCTTTCAGTTTTCAAACTACCGAATTTCAGAACTTTCAAGTTTTCGAATTTCCGAATTTCTGATACTCTAAATTTCCGAATTTCAGAATTTTCCAATTTGAAAATTTCCTTTTTTTTTGAAACATCAAATTCAAAAACTGGAGAATTTCTAGCCTTTTTATCTCTCGAATTTTTTTCCGAATATTTAAGTTTGATGACTTCCGTATTTTTGAACTTCTAATATTTCGAACTTCCGAACTTCTGAATTCCCGAATTTCAGAAATTCAGAATTTGAGAGTTAAAGAATTAAACAATTAAAGAAAGAATATCTGATTTTTCGAATTTTTTAATGTAGTTTTTGAATTTCTAAGTTTTTGAACTTTCAAATTTCTGAATATCTGAATTCCCGAATCTGAGACAATCTATCTTTCGAGAGTATTTCTGAATTTTGGAATTTCTGATATTCTAATTTAAACTTTTTTTCATTAAACTTTTGAGTAATTCGTTTCAGAAGCTTTTGACA</canonical>
            <polymorphic>CTTCTCACTCTTTTTTATTGTTCTTTGAAAGAGGATTTGTGACAAGTGATTTTAAGTTTTCAAGAAGAGAACACACCTAGTATCTGCCAGGAACACGCCCAACAGAAGTGAGAAAAGAGGGCTTTCATTCACAAGAAGACATTCGATTTCTGAAACTTCTAAAAATTTATGAAGGTTCTTTTCTGTTTTTTTTTGGAATTTGTTTGTTGAGAAGGTAGAAAGGTGATTTTGTGGAAATATTATTTTTGGGTCTTGAAATTTTGAAAAGGAGAAAAAAGTCTGGAAAGGTAAGAATGTTTCCTGGAATTAACTGCGTTTTTAGAACTCTTTGGATTTCATTTTAAGAAATGAATAACTTCAGAAAATTTCTGAACTTCTGAATTTAACCCTCTGAATTTTCAAATCATCATTATTCAGAACTTGAGAAATTGTGAGCTTTCGGAATTCTGAATGTTTGAATTTATATTTTACGCATTTTCAATATTCCGACTACCCAGACYTTTCAGTTTTCAAACTACCGAATTTCAGAACTTTCAAGTTTTCGAATTTCCGAATTTCTGATACTCTAAATTTCCGAATTTCAGAATTTTCCAATTTGAAAATTTCCTTTTTTTTTGAAACATCAAATTCAAAAACTGGAGAATTTCTAGCCTTTTTATCTCTCGAATTTTTTTCCGAATATTTAAGTTTGATGACTTCCGTATTTTTGAACTTCTAATATTTCGAACTTCCGAACTTCTGAATTCCCGAATTTCAGAAATTCAGAATTTGAGAGTTAAAGAATTAAACAATTAAAGAAAGAATATCTGATTTTTCGAATTTTTTAATGTAGTTTTTGAATTTCTAAGTTTTTGAACTTTCAAATTTCTGAATATCTGAATTCCCGAATCTGAGACAATCTATCTTTCGAGAGTATTTCTGAATTTTGGAATTTCTGATATTCTAATTTAAACTTTTTTTCATTAAACTTTTGAGTAATTCGTTTCAGAAGCTTTTGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTGAGAAATTGTGAGCTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATTCGAGAGATAAAAAGGCTAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTGAGAAATTGTGAGCTTTCGGAATTCTGAATGTTTGAATTTATATTTTACGCATTTTCAATATTCCGACTACCCAGACCTTTCAGTTTTCAAACTACCGAATTTCAGAACTTTCAAGTTTTCGAATTTCCGAATTTCTGATACTCTAAATTTCCGAATTTCAGAATTTTCCAATTTGAAAATTTCCTTTTTTTTTGAAACATCAAATTCAAAAACTGGAGAATTTCTAGCCTTTTTATCTCTCGAAT</canonical_amplicon>
		<polymorphic_amplicon>ACTTGAGAAATTGTGAGCTTTCGGAATTCTGAATGTTTGAATTTATATTTTACGCATTTTCAATATTCCGACTACCCAGACYTTTCAGTTTTCAAACTACCGAATTTCAGAACTTTCAAGTTTTCGAATTTCCGAATTTCTGATACTCTAAATTTCCGAATTTCAGAATTTTCCAATTTGAAAATTTCCTTTTTTTTTGAAACATCAAATTCAAAAACTGGAGAATTTCTAGCCTTTTTATCTCTCGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27256</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>149361</contig_pos>
        <strand></strand>
        <context>tcaagttttc[G/A]aatttccgaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CCAGACCTTTCAGTTTTCAAACTACCGAATTTCAGAACTTTCAAGTTTTC</left_flank>
        <right_flank>AATTTCCGAATTTCTGATACTCTAAATTTCCGAATTTCAGAATTTTCCAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTGATTTTAAGTTTTCAAGAAGAGAACACACCTAGTATCTGCCAGGAACACGCCCAACAGAAGTGAGAAAAGAGGGCTTTCATTCACAAGAAGACATTCGATTTCTGAAACTTCTAAAAATTTATGAAGGTTCTTTTCTGTTTTTTTTTGGAATTTGTTTGTTGAGAAGGTAGAAAGGTGATTTTGTGGAAATATTATTTTTGGGTCTTGAAATTTTGAAAAGGAGAAAAAAGTCTGGAAAGGTAAGAATGTTTCCTGGAATTAACTGCGTTTTTAGAACTCTTTGGATTTCATTTTAAGAAATGAATAACTTCAGAAAATTTCTGAACTTCTGAATTTAACCCTCTGAATTTTCAAATCATCATTATTCAGAACTTGAGAAATTGTGAGCTTTCGGAATTCTGAATGTTTGAATTTATATTTTACGCATTTTCAATATTCCGACTACCCAGACCTTTCAGTTTTCAAACTACCGAATTTCAGAACTTTCAAGTTTTCGAATTTCCGAATTTCTGATACTCTAAATTTCCGAATTTCAGAATTTTCCAATTTGAAAATTTCCTTTTTTTTTGAAACATCAAATTCAAAAACTGGAGAATTTCTAGCCTTTTTATCTCTCGAATTTTTTTCCGAATATTTAAGTTTGATGACTTCCGTATTTTTGAACTTCTAATATTTCGAACTTCCGAACTTCTGAATTCCCGAATTTCAGAAATTCAGAATTTGAGAGTTAAAGAATTAAACAATTAAAGAAAGAATATCTGATTTTTCGAATTTTTTAATGTAGTTTTTGAATTTCTAAGTTTTTGAACTTTCAAATTTCTGAATATCTGAATTCCCGAATCTGAGACAATCTATCTTTCGAGAGTATTTCTGAATTTTGGAATTTCTGATATTCTAATTTAAACTTTTTTTCATTAAACTTTTGAGTAATTCGTTTCAGAAGCTTTTGACAATTTTAAATATTTTGGGTAATCCATTTCTGTTCAATACTTTAAG</canonical>
            <polymorphic>AGTGATTTTAAGTTTTCAAGAAGAGAACACACCTAGTATCTGCCAGGAACACGCCCAACAGAAGTGAGAAAAGAGGGCTTTCATTCACAAGAAGACATTCGATTTCTGAAACTTCTAAAAATTTATGAAGGTTCTTTTCTGTTTTTTTTTGGAATTTGTTTGTTGAGAAGGTAGAAAGGTGATTTTGTGGAAATATTATTTTTGGGTCTTGAAATTTTGAAAAGGAGAAAAAAGTCTGGAAAGGTAAGAATGTTTCCTGGAATTAACTGCGTTTTTAGAACTCTTTGGATTTCATTTTAAGAAATGAATAACTTCAGAAAATTTCTGAACTTCTGAATTTAACCCTCTGAATTTTCAAATCATCATTATTCAGAACTTGAGAAATTGTGAGCTTTCGGAATTCTGAATGTTTGAATTTATATTTTACGCATTTTCAATATTCCGACTACCCAGACCTTTCAGTTTTCAAACTACCGAATTTCAGAACTTTCAAGTTTTCRAATTTCCGAATTTCTGATACTCTAAATTTCCGAATTTCAGAATTTTCCAATTTGAAAATTTCCTTTTTTTTTGAAACATCAAATTCAAAAACTGGAGAATTTCTAGCCTTTTTATCTCTCGAATTTTTTTCCGAATATTTAAGTTTGATGACTTCCGTATTTTTGAACTTCTAATATTTCGAACTTCCGAACTTCTGAATTCCCGAATTTCAGAAATTCAGAATTTGAGAGTTAAAGAATTAAACAATTAAAGAAAGAATATCTGATTTTTCGAATTTTTTAATGTAGTTTTTGAATTTCTAAGTTTTTGAACTTTCAAATTTCTGAATATCTGAATTCCCGAATCTGAGACAATCTATCTTTCGAGAGTATTTCTGAATTTTGGAATTTCTGATATTCTAATTTAAACTTTTTTTCATTAAACTTTTGAGTAATTCGTTTCAGAAGCTTTTGACAATTTTAAATATTTTGGGTAATCCATTTCTGTTCAATACTTTAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>119 115 107 76 63 60 52 49 43 33 25 24 24 24 21 16 16 16 16 16 15 14 9 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>119 115 107 76 63 60 52 49 43 33 32 25 24 24 21 16 16 16 16 16 15 14 9 8 8 8 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>498 229 181 92</canonical_bands>
                <polymorphic_bands>679 229 92</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>399 136 121 100 92 92 60</canonical_bands>
                <polymorphic_bands>520 136 100 92 92 60</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTGAGAAATTGTGAGCTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATTCGAGAGATAAAAAGGCTAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTGAGAAATTGTGAGCTTTCGGAATTCTGAATGTTTGAATTTATATTTTACGCATTTTCAATATTCCGACTACCCAGACCTTTCAGTTTTCAAACTACCGAATTTCAGAACTTTCAAGTTTTCGAATTTCCGAATTTCTGATACTCTAAATTTCCGAATTTCAGAATTTTCCAATTTGAAAATTTCCTTTTTTTTTGAAACATCAAATTCAAAAACTGGAGAATTTCTAGCCTTTTTATCTCTCGAAT</canonical_amplicon>
		<polymorphic_amplicon>ACTTGAGAAATTGTGAGCTTTCGGAATTCTGAATGTTTGAATTTATATTTTACGCATTTTCAATATTCCGACTACCCAGACCTTTCAGTTTTCAAACTACCGAATTTCAGAACTTTCAAGTTTTCRAATTTCCGAATTTCTGATACTCTAAATTTCCGAATTTCAGAATTTTCCAATTTGAAAATTTCCTTTTTTTTTGAAACATCAAATTCAAAAACTGGAGAATTTCTAGCCTTTTTATCTCTCGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27257</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>149425</contig_pos>
        <strand>+</strand>
        <context>gaaaatttCC[A/T]TTTTTTTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGATACTCTAAATTTCCGAATTTCAGAATTTTCCAATTTGAAAATTTCC</left_flank>
        <right_flank>TTTTTTTTGAAACATCAAATTCAAAAACTGGAGAATTTCTAGCCTTTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGAAAAGAGGGCTTTCATTCACAAGAAGACATTCGATTTCTGAAACTTCTAAAAATTTATGAAGGTTCTTTTCTGTTTTTTTTTGGAATTTGTTTGTTGAGAAGGTAGAAAGGTGATTTTGTGGAAATATTATTTTTGGGTCTTGAAATTTTGAAAAGGAGAAAAAAGTCTGGAAAGGTAAGAATGTTTCCTGGAATTAACTGCGTTTTTAGAACTCTTTGGATTTCATTTTAAGAAATGAATAACTTCAGAAAATTTCTGAACTTCTGAATTTAACCCTCTGAATTTTCAAATCATCATTATTCAGAACTTGAGAAATTGTGAGCTTTCGGAATTCTGAATGTTTGAATTTATATTTTACGCATTTTCAATATTCCGACTACCCAGACCTTTCAGTTTTCAAACTACCGAATTTCAGAACTTTCAAGTTTTCGAATTTCCGAATTTCTGATACTCTAAATTTCCGAATTTCAGAATTTTCCAATTTGAAAATTTCCTTTTTTTTTGAAACATCAAATTCAAAAACTGGAGAATTTCTAGCCTTTTTATCTCTCGAATTTTTTTCCGAATATTTAAGTTTGATGACTTCCGTATTTTTGAACTTCTAATATTTCGAACTTCCGAACTTCTGAATTCCCGAATTTCAGAAATTCAGAATTTGAGAGTTAAAGAATTAAACAATTAAAGAAAGAATATCTGATTTTTCGAATTTTTTAATGTAGTTTTTGAATTTCTAAGTTTTTGAACTTTCAAATTTCTGAATATCTGAATTCCCGAATCTGAGACAATCTATCTTTCGAGAGTATTTCTGAATTTTGGAATTTCTGATATTCTAATTTAAACTTTTTTTCATTAAACTTTTGAGTAATTCGTTTCAGAAGCTTTTGACAATTTTAAATATTTTGGGTAATCCATTTCTGTTCAATACTTTAAGTTAGACCAAATTTTTATTCAAATTTCTCAGATTTTTTGGGTTATGGGAATCAAAATCAGGTCTC</canonical>
            <polymorphic>TGAGAAAAGAGGGCTTTCATTCACAAGAAGACATTCGATTTCTGAAACTTCTAAAAATTTATGAAGGTTCTTTTCTGTTTTTTTTTGGAATTTGTTTGTTGAGAAGGTAGAAAGGTGATTTTGTGGAAATATTATTTTTGGGTCTTGAAATTTTGAAAAGGAGAAAAAAGTCTGGAAAGGTAAGAATGTTTCCTGGAATTAACTGCGTTTTTAGAACTCTTTGGATTTCATTTTAAGAAATGAATAACTTCAGAAAATTTCTGAACTTCTGAATTTAACCCTCTGAATTTTCAAATCATCATTATTCAGAACTTGAGAAATTGTGAGCTTTCGGAATTCTGAATGTTTGAATTTATATTTTACGCATTTTCAATATTCCGACTACCCAGACCTTTCAGTTTTCAAACTACCGAATTTCAGAACTTTCAAGTTTTCGAATTTCCGAATTTCTGATACTCTAAATTTCCGAATTTCAGAATTTTCCAATTTGAAAATTTCCWTTTTTTTTGAAACATCAAATTCAAAAACTGGAGAATTTCTAGCCTTTTTATCTCTCGAATTTTTTTCCGAATATTTAAGTTTGATGACTTCCGTATTTTTGAACTTCTAATATTTCGAACTTCCGAACTTCTGAATTCCCGAATTTCAGAAATTCAGAATTTGAGAGTTAAAGAATTAAACAATTAAAGAAAGAATATCTGATTTTTCGAATTTTTTAATGTAGTTTTTGAATTTCTAAGTTTTTGAACTTTCAAATTTCTGAATATCTGAATTCCCGAATCTGAGACAATCTATCTTTCGAGAGTATTTCTGAATTTTGGAATTTCTGATATTCTAATTTAAACTTTTTTTCATTAAACTTTTGAGTAATTCGTTTCAGAAGCTTTTGACAATTTTAAATATTTTGGGTAATCCATTTCTGTTCAATACTTTAAGTTAGACCAAATTTTTATTCAAATTTCTCAGATTTTTTGGGTTATGGGAATCAAAATCAGGTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTGAGAAATTGTGAGCTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATTCGAGAGATAAAAAGGCTAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTGAGAAATTGTGAGCTTTCGGAATTCTGAATGTTTGAATTTATATTTTACGCATTTTCAATATTCCGACTACCCAGACCTTTCAGTTTTCAAACTACCGAATTTCAGAACTTTCAAGTTTTCGAATTTCCGAATTTCTGATACTCTAAATTTCCGAATTTCAGAATTTTCCAATTTGAAAATTTCCTTTTTTTTTGAAACATCAAATTCAAAAACTGGAGAATTTCTAGCCTTTTTATCTCTCGAAT</canonical_amplicon>
		<polymorphic_amplicon>ACTTGAGAAATTGTGAGCTTTCGGAATTCTGAATGTTTGAATTTATATTTTACGCATTTTCAATATTCCGACTACCCAGACCTTTCAGTTTTCAAACTACCGAATTTCAGAACTTTCAAGTTTTCGAATTTCCGAATTTCTGATACTCTAAATTTCCGAATTTCAGAATTTTCCAATTTGAAAATTTCCWTTTTTTTTGAAACATCAAATTCAAAAACTGGAGAATTTCTAGCCTTTTTATCTCTCGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27258</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>149444</contig_pos>
        <strand></strand>
        <context>GAAACATCAA[A/T]TTCAAAAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTCAGAATTTTCCAATTTGAAAATTTCCTTTTTTTTTGAAACATCAA</left_flank>
        <right_flank>TTCAAAAACTGGAGAATTTCTAGCCTTTTTATCTCTCGAATTTTTTTCCG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCACAAGAAGACATTCGATTTCTGAAACTTCTAAAAATTTATGAAGGTTCTTTTCTGTTTTTTTTTGGAATTTGTTTGTTGAGAAGGTAGAAAGGTGATTTTGTGGAAATATTATTTTTGGGTCTTGAAATTTTGAAAAGGAGAAAAAAGTCTGGAAAGGTAAGAATGTTTCCTGGAATTAACTGCGTTTTTAGAACTCTTTGGATTTCATTTTAAGAAATGAATAACTTCAGAAAATTTCTGAACTTCTGAATTTAACCCTCTGAATTTTCAAATCATCATTATTCAGAACTTGAGAAATTGTGAGCTTTCGGAATTCTGAATGTTTGAATTTATATTTTACGCATTTTCAATATTCCGACTACCCAGACCTTTCAGTTTTCAAACTACCGAATTTCAGAACTTTCAAGTTTTCGAATTTCCGAATTTCTGATACTCTAAATTTCCGAATTTCAGAATTTTCCAATTTGAAAATTTCCTTTTTTTTTGAAACATCAAATTCAAAAACTGGAGAATTTCTAGCCTTTTTATCTCTCGAATTTTTTTCCGAATATTTAAGTTTGATGACTTCCGTATTTTTGAACTTCTAATATTTCGAACTTCCGAACTTCTGAATTCCCGAATTTCAGAAATTCAGAATTTGAGAGTTAAAGAATTAAACAATTAAAGAAAGAATATCTGATTTTTCGAATTTTTTAATGTAGTTTTTGAATTTCTAAGTTTTTGAACTTTCAAATTTCTGAATATCTGAATTCCCGAATCTGAGACAATCTATCTTTCGAGAGTATTTCTGAATTTTGGAATTTCTGATATTCTAATTTAAACTTTTTTTCATTAAACTTTTGAGTAATTCGTTTCAGAAGCTTTTGACAATTTTAAATATTTTGGGTAATCCATTTCTGTTCAATACTTTAAGTTAGACCAAATTTTTATTCAAATTTCTCAGATTTTTTGGGTTATGGGAATCAAAATCAGGTCTCAGAATTGTCATTGTTCTTC</canonical>
            <polymorphic>TTCACAAGAAGACATTCGATTTCTGAAACTTCTAAAAATTTATGAAGGTTCTTTTCTGTTTTTTTTTGGAATTTGTTTGTTGAGAAGGTAGAAAGGTGATTTTGTGGAAATATTATTTTTGGGTCTTGAAATTTTGAAAAGGAGAAAAAAGTCTGGAAAGGTAAGAATGTTTCCTGGAATTAACTGCGTTTTTAGAACTCTTTGGATTTCATTTTAAGAAATGAATAACTTCAGAAAATTTCTGAACTTCTGAATTTAACCCTCTGAATTTTCAAATCATCATTATTCAGAACTTGAGAAATTGTGAGCTTTCGGAATTCTGAATGTTTGAATTTATATTTTACGCATTTTCAATATTCCGACTACCCAGACCTTTCAGTTTTCAAACTACCGAATTTCAGAACTTTCAAGTTTTCGAATTTCCGAATTTCTGATACTCTAAATTTCCGAATTTCAGAATTTTCCAATTTGAAAATTTCCTTTTTTTTTGAAACATCAAWTTCAAAAACTGGAGAATTTCTAGCCTTTTTATCTCTCGAATTTTTTTCCGAATATTTAAGTTTGATGACTTCCGTATTTTTGAACTTCTAATATTTCGAACTTCCGAACTTCTGAATTCCCGAATTTCAGAAATTCAGAATTTGAGAGTTAAAGAATTAAACAATTAAAGAAAGAATATCTGATTTTTCGAATTTTTTAATGTAGTTTTTGAATTTCTAAGTTTTTGAACTTTCAAATTTCTGAATATCTGAATTCCCGAATCTGAGACAATCTATCTTTCGAGAGTATTTCTGAATTTTGGAATTTCTGATATTCTAATTTAAACTTTTTTTCATTAAACTTTTGAGTAATTCGTTTCAGAAGCTTTTGACAATTTTAAATATTTTGGGTAATCCATTTCTGTTCAATACTTTAAGTTAGACCAAATTTTTATTCAAATTTCTCAGATTTTTTGGGTTATGGGAATCAAAATCAGGTCTCAGAATTGTCATTGTTCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>123 107 76 63 63 60 52 49 43 36 33 25 24 24 24 21 16 16 16 16 16 15 14 12 9 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>123 107 76 63 63 60 52 49 43 41 36 33 24 24 24 21 16 16 16 16 15 14 12 9 8 8 8 8 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>76 63 60 59 53 48 46 43 36 33 33 32 28 25 24 24 24 23 21 17 16 16 16 16 16 16 15 15 14 12 9 8 8 8 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>76 63 60 59 53 48 46 43 41 36 33 33 32 28 24 24 24 23 21 17 16 16 16 16 16 15 15 14 12 9 8 8 8 8 8 8 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAATGTTTGAATTTATATTTTACG</pcr_primer_p1>
		<pcr_primer_p2>AAATACGGAAGTCATCAAACTTA</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>TGAATGTTTGAATTTATATTTTACGCATTTTCAATATTCCGACTACCCAGACCTTTCAGTTTTCAAACTACCGAATTTCAGAACTTTCAAGTTTTCGAATTTCCGAATTTCTGATACTCTAAATTTCCGAATTTCAGAATTTTCCAATTTGAAAATTTCCTTTTTTTTTGAAACATCAAATTCAAAAACTGGAGAATTTCTAGCCTTTTTATCTCTCGAATTTTTTTCCGAATATTTAAGTTTGATGACTTCCGTATTT</canonical_amplicon>
		<polymorphic_amplicon>TGAATGTTTGAATTTATATTTTACGCATTTTCAATATTCCGACTACCCAGACCTTTCAGTTTTCAAACTACCGAATTTCAGAACTTTCAAGTTTTCGAATTTCCGAATTTCTGATACTCTAAATTTCCGAATTTCAGAATTTTCCAATTTGAAAATTTCCTTTTTTTTTGAAACATCAAWTTCAAAAACTGGAGAATTTCTAGCCTTTTTATCTCTCGAATTTTTTTCCGAATATTTAAGTTTGATGACTTCCGTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27259</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>149488</contig_pos>
        <strand>+</strand>
        <context>TCTCGAATTT[C/T]TTTCCGAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATCAAATTCAAAAACTGGAGAATTTCTAGCCTTTTTATCTCTCGAATTT</left_flank>
        <right_flank>TTTCCGAATATTTAAGTTTGATGACTTCCGTATTTTTGAACTTCTAATAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGTTCTTTTCTGTTTTTTTTTGGAATTTGTTTGTTGAGAAGGTAGAAAGGTGATTTTGTGGAAATATTATTTTTGGGTCTTGAAATTTTGAAAAGGAGAAAAAAGTCTGGAAAGGTAAGAATGTTTCCTGGAATTAACTGCGTTTTTAGAACTCTTTGGATTTCATTTTAAGAAATGAATAACTTCAGAAAATTTCTGAACTTCTGAATTTAACCCTCTGAATTTTCAAATCATCATTATTCAGAACTTGAGAAATTGTGAGCTTTCGGAATTCTGAATGTTTGAATTTATATTTTACGCATTTTCAATATTCCGACTACCCAGACCTTTCAGTTTTCAAACTACCGAATTTCAGAACTTTCAAGTTTTCGAATTTCCGAATTTCTGATACTCTAAATTTCCGAATTTCAGAATTTTCCAATTTGAAAATTTCCTTTTTTTTTGAAACATCAAATTCAAAAACTGGAGAATTTCTAGCCTTTTTATCTCTCGAATTTTTTTCCGAATATTTAAGTTTGATGACTTCCGTATTTTTGAACTTCTAATATTTCGAACTTCCGAACTTCTGAATTCCCGAATTTCAGAAATTCAGAATTTGAGAGTTAAAGAATTAAACAATTAAAGAAAGAATATCTGATTTTTCGAATTTTTTAATGTAGTTTTTGAATTTCTAAGTTTTTGAACTTTCAAATTTCTGAATATCTGAATTCCCGAATCTGAGACAATCTATCTTTCGAGAGTATTTCTGAATTTTGGAATTTCTGATATTCTAATTTAAACTTTTTTTCATTAAACTTTTGAGTAATTCGTTTCAGAAGCTTTTGACAATTTTAAATATTTTGGGTAATCCATTTCTGTTCAATACTTTAAGTTAGACCAAATTTTTATTCAAATTTCTCAGATTTTTTGGGTTATGGGAATCAAAATCAGGTCTCAGAATTGTCATTGTTCTTCCAGGTTTTCATTCTCATTTTTTGTTGAAATTTATTTCACAGGTT</canonical>
            <polymorphic>AAGGTTCTTTTCTGTTTTTTTTTGGAATTTGTTTGTTGAGAAGGTAGAAAGGTGATTTTGTGGAAATATTATTTTTGGGTCTTGAAATTTTGAAAAGGAGAAAAAAGTCTGGAAAGGTAAGAATGTTTCCTGGAATTAACTGCGTTTTTAGAACTCTTTGGATTTCATTTTAAGAAATGAATAACTTCAGAAAATTTCTGAACTTCTGAATTTAACCCTCTGAATTTTCAAATCATCATTATTCAGAACTTGAGAAATTGTGAGCTTTCGGAATTCTGAATGTTTGAATTTATATTTTACGCATTTTCAATATTCCGACTACCCAGACCTTTCAGTTTTCAAACTACCGAATTTCAGAACTTTCAAGTTTTCGAATTTCCGAATTTCTGATACTCTAAATTTCCGAATTTCAGAATTTTCCAATTTGAAAATTTCCTTTTTTTTTGAAACATCAAATTCAAAAACTGGAGAATTTCTAGCCTTTTTATCTCTCGAATTTYTTTCCGAATATTTAAGTTTGATGACTTCCGTATTTTTGAACTTCTAATATTTCGAACTTCCGAACTTCTGAATTCCCGAATTTCAGAAATTCAGAATTTGAGAGTTAAAGAATTAAACAATTAAAGAAAGAATATCTGATTTTTCGAATTTTTTAATGTAGTTTTTGAATTTCTAAGTTTTTGAACTTTCAAATTTCTGAATATCTGAATTCCCGAATCTGAGACAATCTATCTTTCGAGAGTATTTCTGAATTTTGGAATTTCTGATATTCTAATTTAAACTTTTTTTCATTAAACTTTTGAGTAATTCGTTTCAGAAGCTTTTGACAATTTTAAATATTTTGGGTAATCCATTTCTGTTCAATACTTTAAGTTAGACCAAATTTTTATTCAAATTTCTCAGATTTTTTGGGTTATGGGAATCAAAATCAGGTCTCAGAATTGTCATTGTTCTTCCAGGTTTTCATTCTCATTTTTTGTTGAAATTTATTTCACAGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAATTCTGAATGTTTGAATTTAT</pcr_primer_p1>
		<pcr_primer_p2>CGAAAAATCAGATATTCTTTCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>377</pcr_amplicon_size>
		<canonical_amplicon>GGAATTCTGAATGTTTGAATTTATATTTTACGCATTTTCAATATTCCGACTACCCAGACCTTTCAGTTTTCAAACTACCGAATTTCAGAACTTTCAAGTTTTCGAATTTCCGAATTTCTGATACTCTAAATTTCCGAATTTCAGAATTTTCCAATTTGAAAATTTCCTTTTTTTTTGAAACATCAAATTCAAAAACTGGAGAATTTCTAGCCTTTTTATCTCTCGAATTTTTTTCCGAATATTTAAGTTTGATGACTTCCGTATTTTTGAACTTCTAATATTTCGAACTTCCGAACTTCTGAATTCCCGAATTTCAGAAATTCAGAATTTGAGAGTTAAAGAATTAAACAATTAAAGAAAGAATATCTGATTTTTCG</canonical_amplicon>
		<polymorphic_amplicon>GGAATTCTGAATGTTTGAATTTATATTTTACGCATTTTCAATATTCCGACTACCCAGACCTTTCAGTTTTCAAACTACCGAATTTCAGAACTTTCAAGTTTTCGAATTTCCGAATTTCTGATACTCTAAATTTCCGAATTTCAGAATTTTCCAATTTGAAAATTTCCTTTTTTTTTGAAACATCAAATTCAAAAACTGGAGAATTTCTAGCCTTTTTATCTCTCGAATTTYTTTCCGAATATTTAAGTTTGATGACTTCCGTATTTTTGAACTTCTAATATTTCGAACTTCCGAACTTCTGAATTCCCGAATTTCAGAAATTCAGAATTTGAGAGTTAAAGAATTAAACAATTAAAGAAAGAATATCTGATTTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27260</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>149802</contig_pos>
        <strand>+</strand>
        <context>GTAATTCGTT[C/T]CAGAAGCTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGATATTCTAATTTAAACTTTTTTTCATTAAACTTTTGAGTAATTCGTT</left_flank>
        <right_flank>CAGAAGCTTTTGACAATTTTAAATATTTTGGGTAATCCATTTCTGTTCAA</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGACTACCCAGACCTTTCAGTTTTCAAACTACCGAATTTCAGAACTTTCAAGTTTTCGAATTTCCGAATTTCTGATACTCTAAATTTCCGAATTTCAGAATTTTCCAATTTGAAAATTTCCTTTTTTTTTGAAACATCAAATTCAAAAACTGGAGAATTTCTAGCCTTTTTATCTCTCGAATTTTTTTCCGAATATTTAAGTTTGATGACTTCCGTATTTTTGAACTTCTAATATTTCGAACTTCCGAACTTCTGAATTCCCGAATTTCAGAAATTCAGAATTTGAGAGTTAAAGAATTAAACAATTAAAGAAAGAATATCTGATTTTTCGAATTTTTTAATGTAGTTTTTGAATTTCTAAGTTTTTGAACTTTCAAATTTCTGAATATCTGAATTCCCGAATCTGAGACAATCTATCTTTCGAGAGTATTTCTGAATTTTGGAATTTCTGATATTCTAATTTAAACTTTTTTTCATTAAACTTTTGAGTAATTCGTTTCAGAAGCTTTTGACAATTTTAAATATTTTGGGTAATCCATTTCTGTTCAATACTTTAAGTTAGACCAAATTTTTATTCAAATTTCTCAGATTTTTTGGGTTATGGGAATCAAAATCAGGTCTCAGAATTGTCATTGTTCTTCCAGGTTTTCATTCTCATTTTTTGTTGAAATTTATTTCACAGGTTCATAGAATTGTATTACGTATGAACTTATAGAATTCTATCATCGTCATGTTCTTTATCTTCAACTGATGCGCTGTTGACTGGTCGATTGGAATGCCTGGAATTTATAATTAAAGTCACCGTCTGCTGTTGCTGCCCGCTCTTTTTCCTTGTCTTCTAGCTTTTCTTATTCTCTTCATTTCTATTTCCAATTTCCCCCTAACACCATTTTCCATTCTGAACGAAAGCTCTCATTTCATTAAAAAAGGGAGCGGAAAGAAGGCTCATTTAACTCGTAAAACCCTTTTCTGGACATCGTTTTTTCTCTCTTCTATCCT</canonical>
            <polymorphic>CCGACTACCCAGACCTTTCAGTTTTCAAACTACCGAATTTCAGAACTTTCAAGTTTTCGAATTTCCGAATTTCTGATACTCTAAATTTCCGAATTTCAGAATTTTCCAATTTGAAAATTTCCTTTTTTTTTGAAACATCAAATTCAAAAACTGGAGAATTTCTAGCCTTTTTATCTCTCGAATTTTTTTCCGAATATTTAAGTTTGATGACTTCCGTATTTTTGAACTTCTAATATTTCGAACTTCCGAACTTCTGAATTCCCGAATTTCAGAAATTCAGAATTTGAGAGTTAAAGAATTAAACAATTAAAGAAAGAATATCTGATTTTTCGAATTTTTTAATGTAGTTTTTGAATTTCTAAGTTTTTGAACTTTCAAATTTCTGAATATCTGAATTCCCGAATCTGAGACAATCTATCTTTCGAGAGTATTTCTGAATTTTGGAATTTCTGATATTCTAATTTAAACTTTTTTTCATTAAACTTTTGAGTAATTCGTTYCAGAAGCTTTTGACAATTTTAAATATTTTGGGTAATCCATTTCTGTTCAATACTTTAAGTTAGACCAAATTTTTATTCAAATTTCTCAGATTTTTTGGGTTATGGGAATCAAAATCAGGTCTCAGAATTGTCATTGTTCTTCCAGGTTTTCATTCTCATTTTTTGTTGAAATTTATTTCACAGGTTCATAGAATTGTATTACGTATGAACTTATAGAATTCTATCATCGTCATGTTCTTTATCTTCAACTGATGCGCTGTTGACTGGTCGATTGGAATGCCTGGAATTTATAATTAAAGTCACCGTCTGCTGTTGCTGCCCGCTCTTTTTCCTTGTCTTCTAGCTTTTCTTATTCTCTTCATTTCTATTTCCAATTTCCCCCTAACACCATTTTCCATTCTGAACGAAAGCTCTCATTTCATTAAAAAAGGGAGCGGAAAGAAGGCTCATTTAACTCGTAAAACCCTTTTCTGGACATCGTTTTTTCTCTCTTCTATCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>277 99 93 86 61 56 51 44 42 36 29 24 16 16 16 14 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>277 137 99 93 61 56 44 42 36 29 24 16 16 16 14 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAATCTGAGACAATCTATCTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGAACAATGACAATTCTGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CGAATCTGAGACAATCTATCTTTCGAGAGTATTTCTGAATTTTGGAATTTCTGATATTCTAATTTAAACTTTTTTTCATTAAACTTTTGAGTAATTCGTTTCAGAAGCTTTTGACAATTTTAAATATTTTGGGTAATCCATTTCTGTTCAATACTTTAAGTTAGACCAAATTTTTATTCAAATTTCTCAGATTTTTTGGGTTATGGGAATCAAAATCAGGTCTCAGAATTGTCATTGTTCTT</canonical_amplicon>
		<polymorphic_amplicon>CGAATCTGAGACAATCTATCTTTCGAGAGTATTTCTGAATTTTGGAATTTCTGATATTCTAATTTAAACTTTTTTTCATTAAACTTTTGAGTAATTCGTTYCAGAAGCTTTTGACAATTTTAAATATTTTGGGTAATCCATTTCTGTTCAATACTTTAAGTTAGACCAAATTTTTATTCAAATTTCTCAGATTTTTTGGGTTATGGGAATCAAAATCAGGTCTCAGAATTGTCATTGTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27261</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>149835</contig_pos>
        <strand>+</strand>
        <context>ATATTTTGGG[C/T]AATCCATTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTTGAGTAATTCGTTTCAGAAGCTTTTGACAATTTTAAATATTTTGGG</left_flank>
        <right_flank>AATCCATTTCTGTTCAATACTTTAAGTTAGACCAAATTTTTATTCAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAATTTCAGAACTTTCAAGTTTTCGAATTTCCGAATTTCTGATACTCTAAATTTCCGAATTTCAGAATTTTCCAATTTGAAAATTTCCTTTTTTTTTGAAACATCAAATTCAAAAACTGGAGAATTTCTAGCCTTTTTATCTCTCGAATTTTTTTCCGAATATTTAAGTTTGATGACTTCCGTATTTTTGAACTTCTAATATTTCGAACTTCCGAACTTCTGAATTCCCGAATTTCAGAAATTCAGAATTTGAGAGTTAAAGAATTAAACAATTAAAGAAAGAATATCTGATTTTTCGAATTTTTTAATGTAGTTTTTGAATTTCTAAGTTTTTGAACTTTCAAATTTCTGAATATCTGAATTCCCGAATCTGAGACAATCTATCTTTCGAGAGTATTTCTGAATTTTGGAATTTCTGATATTCTAATTTAAACTTTTTTTCATTAAACTTTTGAGTAATTCGTTTCAGAAGCTTTTGACAATTTTAAATATTTTGGGTAATCCATTTCTGTTCAATACTTTAAGTTAGACCAAATTTTTATTCAAATTTCTCAGATTTTTTGGGTTATGGGAATCAAAATCAGGTCTCAGAATTGTCATTGTTCTTCCAGGTTTTCATTCTCATTTTTTGTTGAAATTTATTTCACAGGTTCATAGAATTGTATTACGTATGAACTTATAGAATTCTATCATCGTCATGTTCTTTATCTTCAACTGATGCGCTGTTGACTGGTCGATTGGAATGCCTGGAATTTATAATTAAAGTCACCGTCTGCTGTTGCTGCCCGCTCTTTTTCCTTGTCTTCTAGCTTTTCTTATTCTCTTCATTTCTATTTCCAATTTCCCCCTAACACCATTTTCCATTCTGAACGAAAGCTCTCATTTCATTAAAAAAGGGAGCGGAAAGAAGGCTCATTTAACTCGTAAAACCCTTTTCTGGACATCGTTTTTTCTCTCTTCTATCCTCTTTTCTTGCTCAATCCAAAGTGCTCCAAAACG</canonical>
            <polymorphic>CGAATTTCAGAACTTTCAAGTTTTCGAATTTCCGAATTTCTGATACTCTAAATTTCCGAATTTCAGAATTTTCCAATTTGAAAATTTCCTTTTTTTTTGAAACATCAAATTCAAAAACTGGAGAATTTCTAGCCTTTTTATCTCTCGAATTTTTTTCCGAATATTTAAGTTTGATGACTTCCGTATTTTTGAACTTCTAATATTTCGAACTTCCGAACTTCTGAATTCCCGAATTTCAGAAATTCAGAATTTGAGAGTTAAAGAATTAAACAATTAAAGAAAGAATATCTGATTTTTCGAATTTTTTAATGTAGTTTTTGAATTTCTAAGTTTTTGAACTTTCAAATTTCTGAATATCTGAATTCCCGAATCTGAGACAATCTATCTTTCGAGAGTATTTCTGAATTTTGGAATTTCTGATATTCTAATTTAAACTTTTTTTCATTAAACTTTTGAGTAATTCGTTTCAGAAGCTTTTGACAATTTTAAATATTTTGGGYAATCCATTTCTGTTCAATACTTTAAGTTAGACCAAATTTTTATTCAAATTTCTCAGATTTTTTGGGTTATGGGAATCAAAATCAGGTCTCAGAATTGTCATTGTTCTTCCAGGTTTTCATTCTCATTTTTTGTTGAAATTTATTTCACAGGTTCATAGAATTGTATTACGTATGAACTTATAGAATTCTATCATCGTCATGTTCTTTATCTTCAACTGATGCGCTGTTGACTGGTCGATTGGAATGCCTGGAATTTATAATTAAAGTCACCGTCTGCTGTTGCTGCCCGCTCTTTTTCCTTGTCTTCTAGCTTTTCTTATTCTCTTCATTTCTATTTCCAATTTCCCCCTAACACCATTTTCCATTCTGAACGAAAGCTCTCATTTCATTAAAAAAGGGAGCGGAAAGAAGGCTCATTTAACTCGTAAAACCCTTTTCTGGACATCGTTTTTTCTCTCTTCTATCCTCTTTTCTTGCTCAATCCAAAGTGCTCCAAAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATCTGAGACAATCTATCTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGAACAATGACAATTCTGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CGAATCTGAGACAATCTATCTTTCGAGAGTATTTCTGAATTTTGGAATTTCTGATATTCTAATTTAAACTTTTTTTCATTAAACTTTTGAGTAATTCGTTTCAGAAGCTTTTGACAATTTTAAATATTTTGGGTAATCCATTTCTGTTCAATACTTTAAGTTAGACCAAATTTTTATTCAAATTTCTCAGATTTTTTGGGTTATGGGAATCAAAATCAGGTCTCAGAATTGTCATTGTTCTT</canonical_amplicon>
		<polymorphic_amplicon>CGAATCTGAGACAATCTATCTTTCGAGAGTATTTCTGAATTTTGGAATTTCTGATATTCTAATTTAAACTTTTTTTCATTAAACTTTTGAGTAATTCGTTTCAGAAGCTTTTGACAATTTTAAATATTTTGGGYAATCCATTTCTGTTCAATACTTTAAGTTAGACCAAATTTTTATTCAAATTTCTCAGATTTTTTGGGTTATGGGAATCAAAATCAGGTCTCAGAATTGTCATTGTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27262</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>150013</contig_pos>
        <strand>+</strand>
        <context>ACGTATGAAC[C/T]TATAGAMTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGTTGAAATTTATTTCACAGGTTCATAGAATTGTATTACGTATGAAC</left_flank>
        <right_flank>TATAGAATTCTATCATCGTCATGTTCTTTATCTTCAACTGATGCGCTGTT</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCGTATTTTTGAACTTCTAATATTTCGAACTTCCGAACTTCTGAATTCCCGAATTTCAGAAATTCAGAATTTGAGAGTTAAAGAATTAAACAATTAAAGAAAGAATATCTGATTTTTCGAATTTTTTAATGTAGTTTTTGAATTTCTAAGTTTTTGAACTTTCAAATTTCTGAATATCTGAATTCCCGAATCTGAGACAATCTATCTTTCGAGAGTATTTCTGAATTTTGGAATTTCTGATATTCTAATTTAAACTTTTTTTCATTAAACTTTTGAGTAATTCGTTTCAGAAGCTTTTGACAATTTTAAATATTTTGGGTAATCCATTTCTGTTCAATACTTTAAGTTAGACCAAATTTTTATTCAAATTTCTCAGATTTTTTGGGTTATGGGAATCAAAATCAGGTCTCAGAATTGTCATTGTTCTTCCAGGTTTTCATTCTCATTTTTTGTTGAAATTTATTTCACAGGTTCATAGAATTGTATTACGTATGAACTTATAGAATTCTATCATCGTCATGTTCTTTATCTTCAACTGATGCGCTGTTGACTGGTCGATTGGAATGCCTGGAATTTATAATTAAAGTCACCGTCTGCTGTTGCTGCCCGCTCTTTTTCCTTGTCTTCTAGCTTTTCTTATTCTCTTCATTTCTATTTCCAATTTCCCCCTAACACCATTTTCCATTCTGAACGAAAGCTCTCATTTCATTAAAAAAGGGAGCGGAAAGAAGGCTCATTTAACTCGTAAAACCCTTTTCTGGACATCGTTTTTTCTCTCTTCTATCCTCTTTTCTTGCTCAATCCAAAGTGCTCCAAAACGGAGCCACGAAGCCTTTCTCAGAGTGTCTCAGTCTCCTCCAAACACGCCATCTCATATCGATTTCTCTGCGGCTCTTTCTTTTCTTTCCAAACAAAGTCAGAAGGGGTCCCCCGAAAAAGAAGAGGACCACAACTCCATTCTCCTATTTTTCGAAATTGTGTAAACCACAACATGTCCT</canonical>
            <polymorphic>TTCCGTATTTTTGAACTTCTAATATTTCGAACTTCCGAACTTCTGAATTCCCGAATTTCAGAAATTCAGAATTTGAGAGTTAAAGAATTAAACAATTAAAGAAAGAATATCTGATTTTTCGAATTTTTTAATGTAGTTTTTGAATTTCTAAGTTTTTGAACTTTCAAATTTCTGAATATCTGAATTCCCGAATCTGAGACAATCTATCTTTCGAGAGTATTTCTGAATTTTGGAATTTCTGATATTCTAATTTAAACTTTTTTTCATTAAACTTTTGAGTAATTCGTTTCAGAAGCTTTTGACAATTTTAAATATTTTGGGTAATCCATTTCTGTTCAATACTTTAAGTTAGACCAAATTTTTATTCAAATTTCTCAGATTTTTTGGGTTATGGGAATCAAAATCAGGTCTCAGAATTGTCATTGTTCTTCCAGGTTTTCATTCTCATTTTTTGTTGAAATTTATTTCACAGGTTCATAGAATTGTATTACGTATGAACYTATAGAATTCTATCATCGTCATGTTCTTTATCTTCAACTGATGCGCTGTTGACTGGTCGATTGGAATGCCTGGAATTTATAATTAAAGTCACCGTCTGCTGTTGCTGCCCGCTCTTTTTCCTTGTCTTCTAGCTTTTCTTATTCTCTTCATTTCTATTTCCAATTTCCCCCTAACACCATTTTCCATTCTGAACGAAAGCTCTCATTTCATTAAAAAAGGGAGCGGAAAGAAGGCTCATTTAACTCGTAAAACCCTTTTCTGGACATCGTTTTTTCTCTCTTCTATCCTCTTTTCTTGCTCAATCCAAAGTGCTCCAAAACGGAGCCACGAAGCCTTTCTCAGAGTGTCTCAGTCTCCTCCAAACACGCCATCTCATATCGATTTCTCTGCGGCTCTTTCTTTTCTTTCCAAACAAAGTCAGAAGGGGTCCCCCGAAAAAGAAGAGGACCACAACTCCATTCTCCTATTTTTCGAAATTGTGTAAACCACAACATGTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTATGGGAATCAAAATCAG</pcr_primer_p1>
		<pcr_primer_p2>AAAGCTAGAAGACAAGGAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTTATGGGAATCAAAATCAGGTCTCAGAATTGTCATTGTTCTTCCAGGTTTTCATTCTCATTTTTTGTTGAAATTTATTTCACAGGTTCATAGAATTGTATTACGTATGAACTTATAGAATTCTATCATCGTCATGTTCTTTATCTTCAACTGATGCGCTGTTGACTGGTCGATTGGAATGCCTGGAATTTATAATTAAAGTCACCGTCTGCTGTTGCTGCCCGCTCTTTTTCCTTGTCTTCTAGCTTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTATGGGAATCAAAATCAGGTCTCAGAATTGTCATTGTTCTTCCAGGTTTTCATTCTCATTTTTTGTTGAAATTTATTTCACAGGTTCATAGAATTGTATTACGTATGAACYTATAGAATTCTATCATCGTCATGTTCTTTATCTTCAACTGATGCGCTGTTGACTGGTCGATTGGAATGCCTGGAATTTATAATTAAAGTCACCGTCTGCTGTTGCTGCCCGCTCTTTTTCCTTGTCTTCTAGCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27263</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>150020</contig_pos>
        <strand>+</strand>
        <context>AACYTATAGA[A/C]TTCTATCATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAATTTATTTCACAGGTTCATAGAATTGTATTACGTATGAACTTATAGA</left_flank>
        <right_flank>TTCTATCATCGTCATGTTCTTTATCTTCAACTGATGCGCTGTTGACTGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTGAACTTCTAATATTTCGAACTTCCGAACTTCTGAATTCCCGAATTTCAGAAATTCAGAATTTGAGAGTTAAAGAATTAAACAATTAAAGAAAGAATATCTGATTTTTCGAATTTTTTAATGTAGTTTTTGAATTTCTAAGTTTTTGAACTTTCAAATTTCTGAATATCTGAATTCCCGAATCTGAGACAATCTATCTTTCGAGAGTATTTCTGAATTTTGGAATTTCTGATATTCTAATTTAAACTTTTTTTCATTAAACTTTTGAGTAATTCGTTTCAGAAGCTTTTGACAATTTTAAATATTTTGGGTAATCCATTTCTGTTCAATACTTTAAGTTAGACCAAATTTTTATTCAAATTTCTCAGATTTTTTGGGTTATGGGAATCAAAATCAGGTCTCAGAATTGTCATTGTTCTTCCAGGTTTTCATTCTCATTTTTTGTTGAAATTTATTTCACAGGTTCATAGAATTGTATTACGTATGAACTTATAGAATTCTATCATCGTCATGTTCTTTATCTTCAACTGATGCGCTGTTGACTGGTCGATTGGAATGCCTGGAATTTATAATTAAAGTCACCGTCTGCTGTTGCTGCCCGCTCTTTTTCCTTGTCTTCTAGCTTTTCTTATTCTCTTCATTTCTATTTCCAATTTCCCCCTAACACCATTTTCCATTCTGAACGAAAGCTCTCATTTCATTAAAAAAGGGAGCGGAAAGAAGGCTCATTTAACTCGTAAAACCCTTTTCTGGACATCGTTTTTTCTCTCTTCTATCCTCTTTTCTTGCTCAATCCAAAGTGCTCCAAAACGGAGCCACGAAGCCTTTCTCAGAGTGTCTCAGTCTCCTCCAAACACGCCATCTCATATCGATTTCTCTGCGGCTCTTTCTTTTCTTTCCAAACAAAGTCAGAAGGGGTCCCCCGAAAAAGAAGAGGACCACAACTCCATTCTCCTATTTTTCGAAATTGTGTAAACCACAACATGTCCTTTTTCTT</canonical>
            <polymorphic>TTTTTGAACTTCTAATATTTCGAACTTCCGAACTTCTGAATTCCCGAATTTCAGAAATTCAGAATTTGAGAGTTAAAGAATTAAACAATTAAAGAAAGAATATCTGATTTTTCGAATTTTTTAATGTAGTTTTTGAATTTCTAAGTTTTTGAACTTTCAAATTTCTGAATATCTGAATTCCCGAATCTGAGACAATCTATCTTTCGAGAGTATTTCTGAATTTTGGAATTTCTGATATTCTAATTTAAACTTTTTTTCATTAAACTTTTGAGTAATTCGTTTCAGAAGCTTTTGACAATTTTAAATATTTTGGGTAATCCATTTCTGTTCAATACTTTAAGTTAGACCAAATTTTTATTCAAATTTCTCAGATTTTTTGGGTTATGGGAATCAAAATCAGGTCTCAGAATTGTCATTGTTCTTCCAGGTTTTCATTCTCATTTTTTGTTGAAATTTATTTCACAGGTTCATAGAATTGTATTACGTATGAACTTATAGAMTTCTATCATCGTCATGTTCTTTATCTTCAACTGATGCGCTGTTGACTGGTCGATTGGAATGCCTGGAATTTATAATTAAAGTCACCGTCTGCTGTTGCTGCCCGCTCTTTTTCCTTGTCTTCTAGCTTTTCTTATTCTCTTCATTTCTATTTCCAATTTCCCCCTAACACCATTTTCCATTCTGAACGAAAGCTCTCATTTCATTAAAAAAGGGAGCGGAAAGAAGGCTCATTTAACTCGTAAAACCCTTTTCTGGACATCGTTTTTTCTCTCTTCTATCCTCTTTTCTTGCTCAATCCAAAGTGCTCCAAAACGGAGCCACGAAGCCTTTCTCAGAGTGTCTCAGTCTCCTCCAAACACGCCATCTCATATCGATTTCTCTGCGGCTCTTTCTTTTCTTTCCAAACAAAGTCAGAAGGGGTCCCCCGAAAAAGAAGAGGACCACAACTCCATTCTCCTATTTTTCGAAATTGTGTAAACCACAACATGTCCTTTTTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>434 123 90 68 52 47 43 38 24 21 16 12 9 8 8 7</canonical_bands>
                <polymorphic_bands>434 123 115 90 52 43 38 24 21 16 12 9 8 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>502 323 137 38</canonical_bands>
                <polymorphic_bands>825 137 38</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>314 81 68 53 46 44 43 38 32 32 28 25 24 23 22 21 16 16 15 12 9 8 8 8 7 7</canonical_bands>
                <polymorphic_bands>314 93 81 53 46 44 43 38 32 32 28 24 23 22 21 16 16 15 12 9 8 8 8 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTATGGGAATCAAAATCAG</pcr_primer_p1>
		<pcr_primer_p2>AAAGCTAGAAGACAAGGAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTTATGGGAATCAAAATCAGGTCTCAGAATTGTCATTGTTCTTCCAGGTTTTCATTCTCATTTTTTGTTGAAATTTATTTCACAGGTTCATAGAATTGTATTACGTATGAACTTATAGAATTCTATCATCGTCATGTTCTTTATCTTCAACTGATGCGCTGTTGACTGGTCGATTGGAATGCCTGGAATTTATAATTAAAGTCACCGTCTGCTGTTGCTGCCCGCTCTTTTTCCTTGTCTTCTAGCTTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTATGGGAATCAAAATCAGGTCTCAGAATTGTCATTGTTCTTCCAGGTTTTCATTCTCATTTTTTGTTGAAATTTATTTCACAGGTTCATAGAATTGTATTACGTATGAACTTATAGAMTTCTATCATCGTCATGTTCTTTATCTTCAACTGATGCGCTGTTGACTGGTCGATTGGAATGCCTGGAATTTATAATTAAAGTCACCGTCTGCTGTTGCTGCCCGCTCTTTTTCCTTGTCTTCTAGCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27264</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>150034</contig_pos>
        <strand>+</strand>
        <context>TATCATCGTC[A/C]TGTTCTTTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGGTTCATAGAATTGTATTACGTATGAACTTATAGAATTCTATCATCGTC</left_flank>
        <right_flank>TGTTCTTTATCTTCAACTGATGCGCTGTTGACTGGTCGATTGGAATGCCT</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATTTCGAACTTCCGAACTTCTGAATTCCCGAATTTCAGAAATTCAGAATTTGAGAGTTAAAGAATTAAACAATTAAAGAAAGAATATCTGATTTTTCGAATTTTTTAATGTAGTTTTTGAATTTCTAAGTTTTTGAACTTTCAAATTTCTGAATATCTGAATTCCCGAATCTGAGACAATCTATCTTTCGAGAGTATTTCTGAATTTTGGAATTTCTGATATTCTAATTTAAACTTTTTTTCATTAAACTTTTGAGTAATTCGTTTCAGAAGCTTTTGACAATTTTAAATATTTTGGGTAATCCATTTCTGTTCAATACTTTAAGTTAGACCAAATTTTTATTCAAATTTCTCAGATTTTTTGGGTTATGGGAATCAAAATCAGGTCTCAGAATTGTCATTGTTCTTCCAGGTTTTCATTCTCATTTTTTGTTGAAATTTATTTCACAGGTTCATAGAATTGTATTACGTATGAACTTATAGAATTCTATCATCGTCATGTTCTTTATCTTCAACTGATGCGCTGTTGACTGGTCGATTGGAATGCCTGGAATTTATAATTAAAGTCACCGTCTGCTGTTGCTGCCCGCTCTTTTTCCTTGTCTTCTAGCTTTTCTTATTCTCTTCATTTCTATTTCCAATTTCCCCCTAACACCATTTTCCATTCTGAACGAAAGCTCTCATTTCATTAAAAAAGGGAGCGGAAAGAAGGCTCATTTAACTCGTAAAACCCTTTTCTGGACATCGTTTTTTCTCTCTTCTATCCTCTTTTCTTGCTCAATCCAAAGTGCTCCAAAACGGAGCCACGAAGCCTTTCTCAGAGTGTCTCAGTCTCCTCCAAACACGCCATCTCATATCGATTTCTCTGCGGCTCTTTCTTTTCTTTCCAAACAAAGTCAGAAGGGGTCCCCCGAAAAAGAAGAGGACCACAACTCCATTCTCCTATTTTTCGAAATTGTGTAAACCACAACATGTCCTTTTTCTTTTCTTAAGATTTTC</canonical>
            <polymorphic>ATATTTCGAACTTCCGAACTTCTGAATTCCCGAATTTCAGAAATTCAGAATTTGAGAGTTAAAGAATTAAACAATTAAAGAAAGAATATCTGATTTTTCGAATTTTTTAATGTAGTTTTTGAATTTCTAAGTTTTTGAACTTTCAAATTTCTGAATATCTGAATTCCCGAATCTGAGACAATCTATCTTTCGAGAGTATTTCTGAATTTTGGAATTTCTGATATTCTAATTTAAACTTTTTTTCATTAAACTTTTGAGTAATTCGTTTCAGAAGCTTTTGACAATTTTAAATATTTTGGGTAATCCATTTCTGTTCAATACTTTAAGTTAGACCAAATTTTTATTCAAATTTCTCAGATTTTTTGGGTTATGGGAATCAAAATCAGGTCTCAGAATTGTCATTGTTCTTCCAGGTTTTCATTCTCATTTTTTGTTGAAATTTATTTCACAGGTTCATAGAATTGTATTACGTATGAACTTATAGAATTCTATCATCGTCMTGTTCTTTATCTTCAACTGATGCGCTGTTGACTGGTCGATTGGAATGCCTGGAATTTATAATTAAAGTCACCGTCTGCTGTTGCTGCCCGCTCTTTTTCCTTGTCTTCTAGCTTTTCTTATTCTCTTCATTTCTATTTCCAATTTCCCCCTAACACCATTTTCCATTCTGAACGAAAGCTCTCATTTCATTAAAAAAGGGAGCGGAAAGAAGGCTCATTTAACTCGTAAAACCCTTTTCTGGACATCGTTTTTTCTCTCTTCTATCCTCTTTTCTTGCTCAATCCAAAGTGCTCCAAAACGGAGCCACGAAGCCTTTCTCAGAGTGTCTCAGTCTCCTCCAAACACGCCATCTCATATCGATTTCTCTGCGGCTCTTTCTTTTCTTTCCAAACAAAGTCAGAAGGGGTCCCCCGAAAAAGAAGAGGACCACAACTCCATTCTCCTATTTTTCGAAATTGTGTAAACCACAACATGTCCTTTTTCTTTTCTTAAGATTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>499 473 28</canonical_bands>
                <polymorphic_bands>972 28</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTATGGGAATCAAAATCAG</pcr_primer_p1>
		<pcr_primer_p2>AAAGCTAGAAGACAAGGAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTTATGGGAATCAAAATCAGGTCTCAGAATTGTCATTGTTCTTCCAGGTTTTCATTCTCATTTTTTGTTGAAATTTATTTCACAGGTTCATAGAATTGTATTACGTATGAACTTATAGAATTCTATCATCGTCATGTTCTTTATCTTCAACTGATGCGCTGTTGACTGGTCGATTGGAATGCCTGGAATTTATAATTAAAGTCACCGTCTGCTGTTGCTGCCCGCTCTTTTTCCTTGTCTTCTAGCTTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTATGGGAATCAAAATCAGGTCTCAGAATTGTCATTGTTCTTCCAGGTTTTCATTCTCATTTTTTGTTGAAATTTATTTCACAGGTTCATAGAATTGTATTACGTATGAACTTATAGAATTCTATCATCGTCMTGTTCTTTATCTTCAACTGATGCGCTGTTGACTGGTCGATTGGAATGCCTGGAATTTATAATTAAAGTCACCGTCTGCTGTTGCTGCCCGCTCTTTTTCCTTGTCTTCTAGCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27265</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>173112</contig_pos>
        <strand>+</strand>
        <context>GAGAACATTG[A/G]AGAAATGACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGTCAATCTCCTTAACCACTCGGACATGACTGCAGGCGAGAGAACATTG</left_flank>
        <right_flank>AGAAATGACAATGAGGTTGCAGCGGAGGCGCAGGAATGTAAAGTAGAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGAAGGATCGGAAATGTGGGAGGAGGAAGAAAAATATTCTAAAAATACAAAATATTGTATTTTAAATAATATTTTAAAGAGAAACTTTTGTGTTTGAACAACTCTATATCAAGAATACAAATACTAAGACTGTTTGACTTGAAACACACATGCCCGAAGAGTACATGATACTTTATACTAGAAGATTAGACTGTTATCAGTGGAGCACACTTGCACGTAAAAAATATTTGATGCTTGATTAGAATGTCTAGTTTCATCATAGGAGAAAAGTTGCATCATGACCTACCAGATTGGTTTTGCTTTCTGCGCTCTCGCTTCCATATTCCATCTAACTTATTCATGACGAATTTCTATTCTGGAATTTTTCTCGTGCTTTGCAAAAATTCAAAAAAGTGTTAACGCAGTCAGCAGGATTCGAACCTACGCGGGCAGAGCCCAATTGATTTCTAGTCAATCTCCTTAACCACTCGGACATGACTGCAGGCGAGAGAACATTGGAGAAATGACAATGAGGTTGCAGCGGAGGCGCAGGAATGTAAAGTAGAGAGATCAAAGAGATGGGATGGGTTTAAAAAGATAACTGATAGAAGGACGTACATGGTTTTGAGTGGTATTGATTCAGAATCCTCAAAAATTTGGGAATGGAATGATGAAAAAAAGAAACTACATCATCTCGAAACACAAAAAAAACAAAACAAAAAAGAAAGTATTGATGGGATTGTTGTGAATTAAGAGAGAAAGAAACAATAACAATCTCTTCTCCCTTATCAAGATGACGATGTTTATGTCTCCAAATCACGAGTAGGAACTCCTGGTTTAAACGAACTGACCGACTATTGAAAATGGGATGAACTACTTTTTTAGGACTGCAAGAACTGCGATAACTAATGTCAGCTGAAATCAGTTACTGATAAAAAACTGACTGATGATCAGAGAAACGGAAAAGTGGTTCATCATAAAACTTTTAAAAGTTGTGGAAAGGCGAAGATAAAAAAGAA</canonical>
            <polymorphic>TGAGAAGGATCGGAAATGTGGGAGGAGGAAGAAAAATATTCTAAAAATACAAAATATTGTATTTTAAATAATATTTTAAAGAGAAACTTTTGTGTTTGAACAACTCTATATCAAGAATACAAATACTAAGACTGTTTGACTTGAAACACACATGCCCGAAGAGTACATGATACTTTATACTAGAAGATTAGACTGTTATCAGTGGAGCACACTTGCACGTAAAAAATATTTGATGCTTGATTAGAATGTCTAGTTTCATCATAGGAGAAAAGTTGCATCATGACCTACCAGATTGGTTTTGCTTTCTGCGCTCTCGCTTCCATATTCCATCTAACTTATTCATGACGAATTTCTATTCTGGAATTTTTCTCGTGCTTTGCAAAAATTCAAAAAAGTGTTAACGCAGTCAGCAGGATTCGAACCTACGCGGGCAGAGCCCAATTGATTTCTAGTCAATCTCCTTAACCACTCGGACATGACTGCAGGCGAGAGAACATTGRAGAAATGACAATGAGGTTGCAGCGGAGGCGCAGGAATGTAAAGTAGAGAGATCAAAGAGATGGGATGGGTTTAAAAAGATAACTGATAGAAGGACGTACATGGTTTTGAGTGGTATTGATTCAGAATCCTCAAAAATTTGGGAATGGAATGATGAAAAAAAGAAACTACATCATCTCGAAACACAAAAAAAACAAAACAAAAAAGAAAGTATTGATGGGATTGTTGTGAATTAAGAGAGAAAGAAACAATAACAATCTCTTCTCCCTTATCAAGATGACGATGTTTATGTCTCCAAATCACGAGTAGGAACTCCTGGTTTAAACGAACTGACCGACTATTGAAAATGGGATGAACTACTTTTTTAGGACTGCAAGAACTGCGATAACTAATGTCAGCTGAAATCAGTTACTGATAAAAAACTGACTGATGATCAGAGAAACGGAAAAGTGGTTCATCATAAAACTTTTAAAAGTTGTGGAAAGGCGAAGATAAAAAAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAATTGATTTCTAGTCAATCTC</pcr_primer_p1>
		<pcr_primer_p2>GTGTTTCGAGATGATGTAGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCAATTGATTTCTAGTCAATCTCCTTAACCACTCGGACATGACTGCAGGCGAGAGAACATTGGAGAAATGACAATGAGGTTGCAGCGGAGGCGCAGGAATGTAAAGTAGAGAGATCAAAGAGATGGGATGGGTTTAAAAAGATAACTGATAGAAGGACGTACATGGTTTTGAGTGGTATTGATTCAGAATCCTCAAAAATTTGGGAATGGAATGATGAAAAAAAGAAACTACATCATCTCGAAACAC</canonical_amplicon>
		<polymorphic_amplicon>CCAATTGATTTCTAGTCAATCTCCTTAACCACTCGGACATGACTGCAGGCGAGAGAACATTGRAGAAATGACAATGAGGTTGCAGCGGAGGCGCAGGAATGTAAAGTAGAGAGATCAAAGAGATGGGATGGGTTTAAAAAGATAACTGATAGAAGGACGTACATGGTTTTGAGTGGTATTGATTCAGAATCCTCAAAAATTTGGGAATGGAATGATGAAAAAAAGAAACTACATCATCTCGAAACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27266</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>173637</contig_pos>
        <strand>+</strand>
        <context>TAGAAAAGCG[A/G]AAARTTCTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTGGAAAGGCGAAGATAAAAAAGAAAAGAGTGATAAAACTAGAAAAGCG</left_flank>
        <right_flank>AAAGTTCTGGAAGGAGGTTTTGTGATCTTTGAGATGTTTGATAACGGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGCGCAGGAATGTAAAGTAGAGAGATCAAAGAGATGGGATGGGTTTAAAAAGATAACTGATAGAAGGACGTACATGGTTTTGAGTGGTATTGATTCAGAATCCTCAAAAATTTGGGAATGGAATGATGAAAAAAAGAAACTACATCATCTCGAAACACAAAAAAAACAAAACAAAAAAGAAAGTATTGATGGGATTGTTGTGAATTAAGAGAGAAAGAAACAATAACAATCTCTTCTCCCTTATCAAGATGACGATGTTTATGTCTCCAAATCACGAGTAGGAACTCCTGGTTTAAACGAACTGACCGACTATTGAAAATGGGATGAACTACTTTTTTAGGACTGCAAGAACTGCGATAACTAATGTCAGCTGAAATCAGTTACTGATAAAAAACTGACTGATGATCAGAGAAACGGAAAAGTGGTTCATCATAAAACTTTTAAAAGTTGTGGAAAGGCGAAGATAAAAAAGAAAAGAGTGATAAAACTAGAAAAGCGAAAAGTTCTGGAAGGAGGTTTTGTGATCTTTGAGATGTTTGATAACGGAAAATGGAAGTTTTAGGTATGTAAAATTCATAAAATTGGGAGATTGAAGAAGTTCAAAAATTTAGAAACTAAATTTAGAATGAGCTGGGCTTCAAAATGAGTACAAACGAGGTTCGGTTTTTTAAAGATTTTATATATTTCTTAAAATCTTCGTCGCGGGCAAATATTCGATGGTGGGCGGAGCTTCAGTTCGGTAGCGAAATCTTTGAAGAAACATATAATTTTCGTAATTATTTATATGGAATTCCATGGAGCCCCATGGAAATTCCAGACGTTTTTTTTTCGAGATTTCCAATGAATTTCATAAATTTTTTCCCCAAAAATCCGAAAAATGAAAAAAAAACAGCATAAAAACAGTGAAAATTATCGAAAAATCGATGAAACTCATCTAAAAATCGAAAAAGTAGGACTGAAAATGATAACGAAAAACCCTATAATTGTACCTTCAAGGAT</canonical>
            <polymorphic>AGGCGCAGGAATGTAAAGTAGAGAGATCAAAGAGATGGGATGGGTTTAAAAAGATAACTGATAGAAGGACGTACATGGTTTTGAGTGGTATTGATTCAGAATCCTCAAAAATTTGGGAATGGAATGATGAAAAAAAGAAACTACATCATCTCGAAACACAAAAAAAACAAAACAAAAAAGAAAGTATTGATGGGATTGTTGTGAATTAAGAGAGAAAGAAACAATAACAATCTCTTCTCCCTTATCAAGATGACGATGTTTATGTCTCCAAATCACGAGTAGGAACTCCTGGTTTAAACGAACTGACCGACTATTGAAAATGGGATGAACTACTTTTTTAGGACTGCAAGAACTGCGATAACTAATGTCAGCTGAAATCAGTTACTGATAAAAAACTGACTGATGATCAGAGAAACGGAAAAGTGGTTCATCATAAAACTTTTAAAAGTTGTGGAAAGGCGAAGATAAAAAAGAAAAGAGTGATAAAACTAGAAAAGCGRAAAGTTCTGGAAGGAGGTTTTGTGATCTTTGAGATGTTTGATAACGGAAAATGGAAGTTTTAGGTATGTAAAATTCATAAAATTGGGAGATTGAAGAAGTTCAAAAATTTAGAAACTAAATTTAGAATGAGCTGGGCTTCAAAATGAGTACAAACGAGGTTCGGTTTTTTAAAGATTTTATATATTTCTTAAAATCTTCGTCGCGGGCAAATATTCGATGGTGGGCGGAGCTTCAGTTCGGTAGCGAAATCTTTGAAGAAACATATAATTTTCGTAATTATTTATATGGAATTCCATGGAGCCCCATGGAAATTCCAGACGTTTTTTTTTCGAGATTTCCAATGAATTTCATAAATTTTTTCCCCAAAAATCCGAAAAATGAAAAAAAAACAGCATAAAAACAGTGAAAATTATCGAAAAATCGATGAAACTCATCTAAAAATCGAAAAAGTAGGACTGAAAATGATAACGAAAAACCCTATAATTGTACCTTCAAGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATGGGATGAACTACTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTAAAACTTCCATTTTCCGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAAATGGGATGAACTACTTTTTTAGGACTGCAAGAACTGCGATAACTAATGTCAGCTGAAATCAGTTACTGATAAAAAACTGACTGATGATCAGAGAAACGGAAAAGTGGTTCATCATAAAACTTTTAAAAGTTGTGGAAAGGCGAAGATAAAAAAGAAAAGAGTGATAAAACTAGAAAAGCGAAAAGTTCTGGAAGGAGGTTTTGTGATCTTTGAGATGTTTGATAACGGAAAATGGAAGTTTTAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATGGGATGAACTACTTTTTTAGGACTGCAAGAACTGCGATAACTAATGTCAGCTGAAATCAGTTACTGATAAAAAACTGACTGATGATCAGAGAAACGGAAAAGTGGTTCATCATAAAACTTTTAAAAGTTGTGGAAAGGCGAAGATAAAAAAGAAAAGAGTGATAAAACTAGAAAAGCGRAAAGTTCTGGAAGGAGGTTTTGTGATCTTTGAGATGTTTGATAACGGAAAATGGAAGTTTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27267</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>173641</contig_pos>
        <strand>+</strand>
        <context>AAAGCGRAAA[A/G]TTCTGGAAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAGGCGAAGATAAAAAAGAAAAGAGTGATAAAACTAGAAAAGCGAAAA</left_flank>
        <right_flank>TTCTGGAAGGAGGTTTTGTGATCTTTGAGATGTTTGATAACGGAAAATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAGGAATGTAAAGTAGAGAGATCAAAGAGATGGGATGGGTTTAAAAAGATAACTGATAGAAGGACGTACATGGTTTTGAGTGGTATTGATTCAGAATCCTCAAAAATTTGGGAATGGAATGATGAAAAAAAGAAACTACATCATCTCGAAACACAAAAAAAACAAAACAAAAAAGAAAGTATTGATGGGATTGTTGTGAATTAAGAGAGAAAGAAACAATAACAATCTCTTCTCCCTTATCAAGATGACGATGTTTATGTCTCCAAATCACGAGTAGGAACTCCTGGTTTAAACGAACTGACCGACTATTGAAAATGGGATGAACTACTTTTTTAGGACTGCAAGAACTGCGATAACTAATGTCAGCTGAAATCAGTTACTGATAAAAAACTGACTGATGATCAGAGAAACGGAAAAGTGGTTCATCATAAAACTTTTAAAAGTTGTGGAAAGGCGAAGATAAAAAAGAAAAGAGTGATAAAACTAGAAAAGCGAAAAGTTCTGGAAGGAGGTTTTGTGATCTTTGAGATGTTTGATAACGGAAAATGGAAGTTTTAGGTATGTAAAATTCATAAAATTGGGAGATTGAAGAAGTTCAAAAATTTAGAAACTAAATTTAGAATGAGCTGGGCTTCAAAATGAGTACAAACGAGGTTCGGTTTTTTAAAGATTTTATATATTTCTTAAAATCTTCGTCGCGGGCAAATATTCGATGGTGGGCGGAGCTTCAGTTCGGTAGCGAAATCTTTGAAGAAACATATAATTTTCGTAATTATTTATATGGAATTCCATGGAGCCCCATGGAAATTCCAGACGTTTTTTTTTCGAGATTTCCAATGAATTTCATAAATTTTTTCCCCAAAAATCCGAAAAATGAAAAAAAAACAGCATAAAAACAGTGAAAATTATCGAAAAATCGATGAAACTCATCTAAAAATCGAAAAAGTAGGACTGAAAATGATAACGAAAAACCCTATAATTGTACCTTCAAGGATTTCA</canonical>
            <polymorphic>GCAGGAATGTAAAGTAGAGAGATCAAAGAGATGGGATGGGTTTAAAAAGATAACTGATAGAAGGACGTACATGGTTTTGAGTGGTATTGATTCAGAATCCTCAAAAATTTGGGAATGGAATGATGAAAAAAAGAAACTACATCATCTCGAAACACAAAAAAAACAAAACAAAAAAGAAAGTATTGATGGGATTGTTGTGAATTAAGAGAGAAAGAAACAATAACAATCTCTTCTCCCTTATCAAGATGACGATGTTTATGTCTCCAAATCACGAGTAGGAACTCCTGGTTTAAACGAACTGACCGACTATTGAAAATGGGATGAACTACTTTTTTAGGACTGCAAGAACTGCGATAACTAATGTCAGCTGAAATCAGTTACTGATAAAAAACTGACTGATGATCAGAGAAACGGAAAAGTGGTTCATCATAAAACTTTTAAAAGTTGTGGAAAGGCGAAGATAAAAAAGAAAAGAGTGATAAAACTAGAAAAGCGAAAARTTCTGGAAGGAGGTTTTGTGATCTTTGAGATGTTTGATAACGGAAAATGGAAGTTTTAGGTATGTAAAATTCATAAAATTGGGAGATTGAAGAAGTTCAAAAATTTAGAAACTAAATTTAGAATGAGCTGGGCTTCAAAATGAGTACAAACGAGGTTCGGTTTTTTAAAGATTTTATATATTTCTTAAAATCTTCGTCGCGGGCAAATATTCGATGGTGGGCGGAGCTTCAGTTCGGTAGCGAAATCTTTGAAGAAACATATAATTTTCGTAATTATTTATATGGAATTCCATGGAGCCCCATGGAAATTCCAGACGTTTTTTTTTCGAGATTTCCAATGAATTTCATAAATTTTTTCCCCAAAAATCCGAAAAATGAAAAAAAAACAGCATAAAAACAGTGAAAATTATCGAAAAATCGATGAAACTCATCTAAAAATCGAAAAAGTAGGACTGAAAATGATAACGAAAAACCCTATAATTGTACCTTCAAGGATTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATGGGATGAACTACTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTAAAACTTCCATTTTCCGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAAATGGGATGAACTACTTTTTTAGGACTGCAAGAACTGCGATAACTAATGTCAGCTGAAATCAGTTACTGATAAAAAACTGACTGATGATCAGAGAAACGGAAAAGTGGTTCATCATAAAACTTTTAAAAGTTGTGGAAAGGCGAAGATAAAAAAGAAAAGAGTGATAAAACTAGAAAAGCGAAAAGTTCTGGAAGGAGGTTTTGTGATCTTTGAGATGTTTGATAACGGAAAATGGAAGTTTTAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAATGGGATGAACTACTTTTTTAGGACTGCAAGAACTGCGATAACTAATGTCAGCTGAAATCAGTTACTGATAAAAAACTGACTGATGATCAGAGAAACGGAAAAGTGGTTCATCATAAAACTTTTAAAAGTTGTGGAAAGGCGAAGATAAAAAAGAAAAGAGTGATAAAACTAGAAAAGCGAAAARTTCTGGAAGGAGGTTTTGTGATCTTTGAGATGTTTGATAACGGAAAATGGAAGTTTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27268</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>173838</contig_pos>
        <strand></strand>
        <context>aaaatcttcg[T/C]cgcggscaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAAACGAGGTTCGGTTTTTTAAAGATTTTATATATTTCTTAAAATCTTCG</left_flank>
        <right_flank>CGCGGGCAAATATTCGATGGTGGGCGGAGCTTCAGTTCGGTAGCGAAATC</right_flank>
        <qual_score>49</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAATTAAGAGAGAAAGAAACAATAACAATCTCTTCTCCCTTATCAAGATGACGATGTTTATGTCTCCAAATCACGAGTAGGAACTCCTGGTTTAAACGAACTGACCGACTATTGAAAATGGGATGAACTACTTTTTTAGGACTGCAAGAACTGCGATAACTAATGTCAGCTGAAATCAGTTACTGATAAAAAACTGACTGATGATCAGAGAAACGGAAAAGTGGTTCATCATAAAACTTTTAAAAGTTGTGGAAAGGCGAAGATAAAAAAGAAAAGAGTGATAAAACTAGAAAAGCGAAAAGTTCTGGAAGGAGGTTTTGTGATCTTTGAGATGTTTGATAACGGAAAATGGAAGTTTTAGGTATGTAAAATTCATAAAATTGGGAGATTGAAGAAGTTCAAAAATTTAGAAACTAAATTTAGAATGAGCTGGGCTTCAAAATGAGTACAAACGAGGTTCGGTTTTTTAAAGATTTTATATATTTCTTAAAATCTTCGTCGCGGGCAAATATTCGATGGTGGGCGGAGCTTCAGTTCGGTAGCGAAATCTTTGAAGAAACATATAATTTTCGTAATTATTTATATGGAATTCCATGGAGCCCCATGGAAATTCCAGACGTTTTTTTTTCGAGATTTCCAATGAATTTCATAAATTTTTTCCCCAAAAATCCGAAAAATGAAAAAAAAACAGCATAAAAACAGTGAAAATTATCGAAAAATCGATGAAACTCATCTAAAAATCGAAAAAGTAGGACTGAAAATGATAACGAAAAACCCTATAATTGTACCTTCAAGGATTTCAATACCGGGCCTAACCCCTTGTAAGCTCCGCCCAGAAGAAAAACTCTAAAAACCGAAAAAAAGGCATCATTTTTTAGAATTTTATAATAAAATTTTAAAATAATGCTCTCCAATGAGAATCTATTACTTTCTAAAAAACAAGCCCTCGGTGCCCAGAAGAACTATTTAAAAAATTTAAACAGTCCAAATATTTTTGAC</canonical>
            <polymorphic>TGAATTAAGAGAGAAAGAAACAATAACAATCTCTTCTCCCTTATCAAGATGACGATGTTTATGTCTCCAAATCACGAGTAGGAACTCCTGGTTTAAACGAACTGACCGACTATTGAAAATGGGATGAACTACTTTTTTAGGACTGCAAGAACTGCGATAACTAATGTCAGCTGAAATCAGTTACTGATAAAAAACTGACTGATGATCAGAGAAACGGAAAAGTGGTTCATCATAAAACTTTTAAAAGTTGTGGAAAGGCGAAGATAAAAAAGAAAAGAGTGATAAAACTAGAAAAGCGAAAAGTTCTGGAAGGAGGTTTTGTGATCTTTGAGATGTTTGATAACGGAAAATGGAAGTTTTAGGTATGTAAAATTCATAAAATTGGGAGATTGAAGAAGTTCAAAAATTTAGAAACTAAATTTAGAATGAGCTGGGCTTCAAAATGAGTACAAACGAGGTTCGGTTTTTTAAAGATTTTATATATTTCTTAAAATCTTCGYCGCGGGCAAATATTCGATGGTGGGCGGAGCTTCAGTTCGGTAGCGAAATCTTTGAAGAAACATATAATTTTCGTAATTATTTATATGGAATTCCATGGAGCCCCATGGAAATTCCAGACGTTTTTTTTTCGAGATTTCCAATGAATTTCATAAATTTTTTCCCCAAAAATCCGAAAAATGAAAAAAAAACAGCATAAAAACAGTGAAAATTATCGAAAAATCGATGAAACTCATCTAAAAATCGAAAAAGTAGGACTGAAAATGATAACGAAAAACCCTATAATTGTACCTTCAAGGATTTCAATACCGGGCCTAACCCCTTGTAAGCTCCGCCCAGAAGAAAAACTCTAAAAACCGAAAAAAAGGCATCATTTTTTAGAATTTTATAATAAAATTTTAAAATAATGCTCTCCAATGAGAATCTATTACTTTCTAAAAAACAAGCCCTCGGTGCCCAGAAGAACTATTTAAAAAATTTAAACAGTCCAAATATTTTTGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTGGGAGATTGAAGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TTCGGTTTTTAGAGTTTTTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>481</pcr_amplicon_size>
		<canonical_amplicon>AAATTGGGAGATTGAAGAAGTTCAAAAATTTAGAAACTAAATTTAGAATGAGCTGGGCTTCAAAATGAGTACAAACGAGGTTCGGTTTTTTAAAGATTTTATATATTTCTTAAAATCTTCGTCGCGGGCAAATATTCGATGGTGGGCGGAGCTTCAGTTCGGTAGCGAAATCTTTGAAGAAACATATAATTTTCGTAATTATTTATATGGAATTCCATGGAGCCCCATGGAAATTCCAGACGTTTTTTTTTCGAGATTTCCAATGAATTTCATAAATTTTTTCCCCAAAAATCCGAAAAATGAAAAAAAAACAGCATAAAAACAGTGAAAATTATCGAAAAATCGATGAAACTCATCTAAAAATCGAAAAAGTAGGACTGAAAATGATAACGAAAAACCCTATAATTGTACCTTCAAGGATTTCAATACCGGGCCTAACCCCTTGTAAGCTCCGCCCAGAAGAAAAACTCTAAAAACCGAA</canonical_amplicon>
		<polymorphic_amplicon>AAATTGGGAGATTGAAGAAGTTCAAAAATTTAGAAACTAAATTTAGAATGAGCTGGGCTTCAAAATGAGTACAAACGAGGTTCGGTTTTTTAAAGATTTTATATATTTCTTAAAATCTTCGYCGCGGGCAAATATTCGATGGTGGGCGGAGCTTCAGTTCGGTAGCGAAATCTTTGAAGAAACATATAATTTTCGTAATTATTTATATGGAATTCCATGGAGCCCCATGGAAATTCCAGACGTTTTTTTTTCGAGATTTCCAATGAATTTCATAAATTTTTTCCCCAAAAATCCGAAAAATGAAAAAAAAACAGCATAAAAACAGTGAAAATTATCGAAAAATCGATGAAACTCATCTAAAAATCGAAAAAGTAGGACTGAAAATGATAACGAAAAACCCTATAATTGTACCTTCAAGGATTTCAATACCGGGCCTAACCCCTTGTAAGCTCCGCCCAGAAGAAAAACTCTAAAAACCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27269</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>173844</contig_pos>
        <strand></strand>
        <context>ttcgycgcgg[G/C]caaatattcg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AGGTTCGGTTTTTTAAAGATTTTATATATTTCTTAAAATCTTCGTCGCGG</left_flank>
        <right_flank>CAAATATTCGATGGTGGGCGGAGCTTCAGTTCGGTAGCGAAATCTTTGAA</right_flank>
        <qual_score>49</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAGAGAAAGAAACAATAACAATCTCTTCTCCCTTATCAAGATGACGATGTTTATGTCTCCAAATCACGAGTAGGAACTCCTGGTTTAAACGAACTGACCGACTATTGAAAATGGGATGAACTACTTTTTTAGGACTGCAAGAACTGCGATAACTAATGTCAGCTGAAATCAGTTACTGATAAAAAACTGACTGATGATCAGAGAAACGGAAAAGTGGTTCATCATAAAACTTTTAAAAGTTGTGGAAAGGCGAAGATAAAAAAGAAAAGAGTGATAAAACTAGAAAAGCGAAAAGTTCTGGAAGGAGGTTTTGTGATCTTTGAGATGTTTGATAACGGAAAATGGAAGTTTTAGGTATGTAAAATTCATAAAATTGGGAGATTGAAGAAGTTCAAAAATTTAGAAACTAAATTTAGAATGAGCTGGGCTTCAAAATGAGTACAAACGAGGTTCGGTTTTTTAAAGATTTTATATATTTCTTAAAATCTTCGTCGCGGGCAAATATTCGATGGTGGGCGGAGCTTCAGTTCGGTAGCGAAATCTTTGAAGAAACATATAATTTTCGTAATTATTTATATGGAATTCCATGGAGCCCCATGGAAATTCCAGACGTTTTTTTTTCGAGATTTCCAATGAATTTCATAAATTTTTTCCCCAAAAATCCGAAAAATGAAAAAAAAACAGCATAAAAACAGTGAAAATTATCGAAAAATCGATGAAACTCATCTAAAAATCGAAAAAGTAGGACTGAAAATGATAACGAAAAACCCTATAATTGTACCTTCAAGGATTTCAATACCGGGCCTAACCCCTTGTAAGCTCCGCCCAGAAGAAAAACTCTAAAAACCGAAAAAAAGGCATCATTTTTTAGAATTTTATAATAAAATTTTAAAATAATGCTCTCCAATGAGAATCTATTACTTTCTAAAAAACAAGCCCTCGGTGCCCAGAAGAACTATTTAAAAAATTTAAACAGTCCAAATATTTTTGACATCGAA</canonical>
            <polymorphic>AAGAGAGAAAGAAACAATAACAATCTCTTCTCCCTTATCAAGATGACGATGTTTATGTCTCCAAATCACGAGTAGGAACTCCTGGTTTAAACGAACTGACCGACTATTGAAAATGGGATGAACTACTTTTTTAGGACTGCAAGAACTGCGATAACTAATGTCAGCTGAAATCAGTTACTGATAAAAAACTGACTGATGATCAGAGAAACGGAAAAGTGGTTCATCATAAAACTTTTAAAAGTTGTGGAAAGGCGAAGATAAAAAAGAAAAGAGTGATAAAACTAGAAAAGCGAAAAGTTCTGGAAGGAGGTTTTGTGATCTTTGAGATGTTTGATAACGGAAAATGGAAGTTTTAGGTATGTAAAATTCATAAAATTGGGAGATTGAAGAAGTTCAAAAATTTAGAAACTAAATTTAGAATGAGCTGGGCTTCAAAATGAGTACAAACGAGGTTCGGTTTTTTAAAGATTTTATATATTTCTTAAAATCTTCGTCGCGGSCAAATATTCGATGGTGGGCGGAGCTTCAGTTCGGTAGCGAAATCTTTGAAGAAACATATAATTTTCGTAATTATTTATATGGAATTCCATGGAGCCCCATGGAAATTCCAGACGTTTTTTTTTCGAGATTTCCAATGAATTTCATAAATTTTTTCCCCAAAAATCCGAAAAATGAAAAAAAAACAGCATAAAAACAGTGAAAATTATCGAAAAATCGATGAAACTCATCTAAAAATCGAAAAAGTAGGACTGAAAATGATAACGAAAAACCCTATAATTGTACCTTCAAGGATTTCAATACCGGGCCTAACCCCTTGTAAGCTCCGCCCAGAAGAAAAACTCTAAAAACCGAAAAAAAGGCATCATTTTTTAGAATTTTATAATAAAATTTTAAAATAATGCTCTCCAATGAGAATCTATTACTTTCTAAAAAACAAGCCCTCGGTGCCCAGAAGAACTATTTAAAAAATTTAAACAGTCCAAATATTTTTGACATCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTGGGAGATTGAAGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TTCGGTTTTTAGAGTTTTTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>481</pcr_amplicon_size>
		<canonical_amplicon>AAATTGGGAGATTGAAGAAGTTCAAAAATTTAGAAACTAAATTTAGAATGAGCTGGGCTTCAAAATGAGTACAAACGAGGTTCGGTTTTTTAAAGATTTTATATATTTCTTAAAATCTTCGTCGCGGGCAAATATTCGATGGTGGGCGGAGCTTCAGTTCGGTAGCGAAATCTTTGAAGAAACATATAATTTTCGTAATTATTTATATGGAATTCCATGGAGCCCCATGGAAATTCCAGACGTTTTTTTTTCGAGATTTCCAATGAATTTCATAAATTTTTTCCCCAAAAATCCGAAAAATGAAAAAAAAACAGCATAAAAACAGTGAAAATTATCGAAAAATCGATGAAACTCATCTAAAAATCGAAAAAGTAGGACTGAAAATGATAACGAAAAACCCTATAATTGTACCTTCAAGGATTTCAATACCGGGCCTAACCCCTTGTAAGCTCCGCCCAGAAGAAAAACTCTAAAAACCGAA</canonical_amplicon>
		<polymorphic_amplicon>AAATTGGGAGATTGAAGAAGTTCAAAAATTTAGAAACTAAATTTAGAATGAGCTGGGCTTCAAAATGAGTACAAACGAGGTTCGGTTTTTTAAAGATTTTATATATTTCTTAAAATCTTCGTCGCGGSCAAATATTCGATGGTGGGCGGAGCTTCAGTTCGGTAGCGAAATCTTTGAAGAAACATATAATTTTCGTAATTATTTATATGGAATTCCATGGAGCCCCATGGAAATTCCAGACGTTTTTTTTTCGAGATTTCCAATGAATTTCATAAATTTTTTCCCCAAAAATCCGAAAAATGAAAAAAAAACAGCATAAAAACAGTGAAAATTATCGAAAAATCGATGAAACTCATCTAAAAATCGAAAAAGTAGGACTGAAAATGATAACGAAAAACCCTATAATTGTACCTTCAAGGATTTCAATACCGGGCCTAACCCCTTGTAAGCTCCGCCCAGAAGAAAAACTCTAAAAACCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27270</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>174217</contig_pos>
        <strand>+</strand>
        <context>TCatttttta[C/T]aattttataa</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCGCCCAGAAGAAAAACTCTAAAAACCGAAAAAAAGGCATCATTTTTTA</left_flank>
        <right_flank>AATTTTATAATAAAATTTTAAAATAATGCTCTCCAATGAGAATCTATTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGGGAGATTGAAGAAGTTCAAAAATTTAGAAACTAAATTTAGAATGAGCTGGGCTTCAAAATGAGTACAAACGAGGTTCGGTTTTTTAAAGATTTTATATATTTCTTAAAATCTTCGTCGCGGGCAAATATTCGATGGTGGGCGGAGCTTCAGTTCGGTAGCGAAATCTTTGAAGAAACATATAATTTTCGTAATTATTTATATGGAATTCCATGGAGCCCCATGGAAATTCCAGACGTTTTTTTTTCGAGATTTCCAATGAATTTCATAAATTTTTTCCCCAAAAATCCGAAAAATGAAAAAAAAACAGCATAAAAACAGTGAAAATTATCGAAAAATCGATGAAACTCATCTAAAAATCGAAAAAGTAGGACTGAAAATGATAACGAAAAACCCTATAATTGTACCTTCAAGGATTTCAATACCGGGCCTAACCCCTTGTAAGCTCCGCCCAGAAGAAAAACTCTAAAAACCGAAAAAAAGGCATCATTTTTTAGAATTTTATAATAAAATTTTAAAATAATGCTCTCCAATGAGAATCTATTACTTTCTAAAAAACAAGCCCTCGGTGCCCAGAAGAACTATTTAAAAAATTTAAACAGTCCAAATATTTTTGACATCGAAAAAAATTGTCCACCTATATATTTTCTTTCCTATGCTGTCAAATATATCATTCTGACCATCACCTCCGCCCTCATGATACATTTTTCTTAAAAATCCAATTTCCACAAAAATGTAGCTCACAGAGCTCCGACTATAATGTATCACGAGGCAGAATGAATTTATGATTTTCCCGGTTGTTTTGTACGAATTCTCCACAAAACGGGCCGCCCATTTTTATCAGATTGTGTTGCTCTTTCTGTTATCTTGAGGGAGAGAACGACACGGTCGAAAGCACAGTTTCATGTGACTGATGAATGAGGGTCAAAAAATGACGTTATGTCAAAAATTCATGTCAAAAATTTAGAGAAAAAGAAGAGGAGAAAAATATATGTTA</canonical>
            <polymorphic>AATTGGGAGATTGAAGAAGTTCAAAAATTTAGAAACTAAATTTAGAATGAGCTGGGCTTCAAAATGAGTACAAACGAGGTTCGGTTTTTTAAAGATTTTATATATTTCTTAAAATCTTCGTCGCGGGCAAATATTCGATGGTGGGCGGAGCTTCAGTTCGGTAGCGAAATCTTTGAAGAAACATATAATTTTCGTAATTATTTATATGGAATTCCATGGAGCCCCATGGAAATTCCAGACGTTTTTTTTTCGAGATTTCCAATGAATTTCATAAATTTTTTCCCCAAAAATCCGAAAAATGAAAAAAAAACAGCATAAAAACAGTGAAAATTATCGAAAAATCGATGAAACTCATCTAAAAATCGAAAAAGTAGGACTGAAAATGATAACGAAAAACCCTATAATTGTACCTTCAAGGATTTCAATACCGGGCCTAACCCCTTGTAAGCTCCGCCCAGAAGAAAAACTCTAAAAACCGAAAAAAAGGCATCATTTTTTAYAATTTTATAATAAAATTTTAAAATAATGCTCTCCAATGAGAATCTATTACTTTCTAAAAAACAAGCCCTCGGTGCCCAGAAGAACTATTTAAAAAATTTAAACAGTCCAAATATTTTTGACATCGAAAAAAATTGTCCACCTATATATTTTCTTTCCTATGCTGTCAAATATATCATTCTGACCATCACCTCCGCCCTCATGATACATTTTTCTTAAAAATCCAATTTCCACAAAAATGTAGCTCACAGAGCTCCGACTATAATGTATCACGAGGCAGAATGAATTTATGATTTTCCCGGTTGTTTTGTACGAATTCTCCACAAAACGGGCCGCCCATTTTTATCAGATTGTGTTGCTCTTTCTGTTATCTTGAGGGAGAGAACGACACGGTCGAAAGCACAGTTTCATGTGACTGATGAATGAGGGTCAAAAAATGACGTTATGTCAAAAATTCATGTCAAAAATTTAGAGAAAAAGAAGAGGAGAAAAATATATGTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>227 188 171 138 81 37 34 30 25 21 13 13 13 9</canonical_bands>
                <polymorphic_bands>240 188 171 138 81 37 34 30 25 21 13 13 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTGGGAGATTGAAGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TGTCAAAAATATTTGGACTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>623</pcr_amplicon_size>
		<canonical_amplicon>AGAATTTTATAATAAAATTTTAAAATAATGCTCTCCAATGAGAATCTATTACTTTCTAAAAAACAAGCCCTCGGTGCCCAGAAGAACTATTTAAAAAATTTAAACAGTCCAAATATTTTTGACA</canonical_amplicon>
		<polymorphic_amplicon>AYAATTTTATAATAAAATTTTAAAATAATGCTCTCCAATGAGAATCTATTACTTTCTAAAAAACAAGCCCTCGGTGCCCAGAAGAACTATTTAAAAAATTTAAACAGTCCAAATATTTTTGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27271</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>175447</contig_pos>
        <strand>+</strand>
        <context>TGATTAATTG[A/G]AAAAAGTAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAAAAAAAAGTTGGTAATTAAAAAAGGAGTAGCACTTCTGATTAATTG</left_flank>
        <right_flank>AAAAAGTAAGAATTAAATGCAAAAACTGAAGTCAAGGAATTTTAAGCAAG</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTTATCATCTGCAAATTCTAATTATACAGTTTTCAACTTTTTTAGAATGTTGGTGAAGGTTTCAAATTGACAGGAGGCGGATTTTTTTAAACAAATTTCCTCCTCTGCCGCAACCTCAATGTCATTTCGCCCTTGTTCTCTCGCAGCAGTCATGTCCGAGTGGTTAAGGAGATTGACTAGAAATCAATTGGGCTCTGCCCGCGTAGGTTCGAATCCTGCTGACTGCGTTAAACCTTTTTGATTTTTGACGGAACGAGAACAATATAGAAATCTCTAGAACAGAGTAGAATTCAGTTGACGTAGCTCTTCATGTAGTGCGGAATGGAAAATTTTTAAAAAGGAGAAGTTGAATAATAAAACTTTGGAATAGCACTCAAGGTGATTGATTTCCATCACTTATCTAGATGAGGATGAGTATTTTTACGACTTGAATGGAATTTTTAAGGTTCAAAAAAAAGTTGGTAATTAAAAAAGGAGTAGCACTTCTGATTAATTGAAAAAAGTAAGAATTAAATGCAAAAACTGAAGTCAAGGAATTTTAAGCAAGTTGGATCTCGAATTCCCCGAAACTAGAAAAGAATCTTCTAGACAAAAAATTTACAGATTTCTGACTAATAGTATGTGTTTTATATAAACATTCATTATATAAGGCAAACAAATTGAGTGGGTCGAAAAGTACTCGGAATTGTCGAGGAAGATTAAGATTTTCATTAGATTCTTCACGTTTTCAACATGTGAGTCTAATCCTAGCATGTTAGGGCTTTATAATGGGAACAGAAAAGGTTTGAGGACAATTTTTTTGGTTTATCGCAAATATGAGATTTTTGAAAAATTGTCTACAGTTTTACAGAGATTGCAGAATATGTATATTACTGTATTCCCTTCAATAGACGCCCACTCAAATCGTCAACTTCGAGCTCAATTACCTCGGTTGCTATTGTCGAATTAAAAAAAGTGGGTCCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTAC</canonical>
            <polymorphic>ACTTTTATCATCTGCAAATTCTAATTATACAGTTTTCAACTTTTTTAGAATGTTGGTGAAGGTTTCAAATTGACAGGAGGCGGATTTTTTTAAACAAATTTCCTCCTCTGCCGCAACCTCAATGTCATTTCGCCCTTGTTCTCTCGCAGCAGTCATGTCCGAGTGGTTAAGGAGATTGACTAGAAATCAATTGGGCTCTGCCCGCGTAGGTTCGAATCCTGCTGACTGCGTTAAACCTTTTTGATTTTTGACGGAACGAGAACAATATAGAAATCTCTAGAACAGAGTAGAATTCAGTTGACGTAGCTCTTCATGTAGTGCGGAATGGAAAATTTTTAAAAAGGAGAAGTTGAATAATAAAACTTTGGAATAGCACTCAAGGTGATTGATTTCCATCACTTATCTAGATGAGGATGAGTATTTTTACGACTTGAATGGAATTTTTAAGGTTCAAAAAAAAGTTGGTAATTAAAAAAGGAGTAGCACTTCTGATTAATTGRAAAAAGTAAGAATTAAATGCAAAAACTGAAGTCAAGGAATTTTAAGCAAGTTGGATCTCGAATTCCCCGAAACTAGAAAAGAATCTTCTAGACAAAAAATTTACAGATTTCTGACTAATAGTATGTGTTTTATATAAACATTCATTATATAAGGCAAACAAATTGAGTGGGTCGAAAAGTACTCGGAATTGTCGAGGAAGATTAAGATTTTCATTAGATTCTTCACGTTTTCAACATGTGAGTCTAATCCTAGCATGTTAGGGCTTTATAATGGGAACAGAAAAGGTTTGAGGACAATTTTTTTGGTTTATCGCAAATATGAGATTTTTGAAAAATTGTCTACAGTTTTACAGAGATTGCAGAATATGTATATTACTGTATTCCCTTCAATAGACGCCCACTCAAATCGTCAACTTCGAGCTCAATTACCTCGGTTGCTATTGTCGAATTAAAAAAAGTGGGTCCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATGAGTATTTTTACGACTTGA</pcr_primer_p1>
		<pcr_primer_p2>TTGTTTGCCTTATATAATGAATGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGATGAGTATTTTTACGACTTGAATGGAATTTTTAAGGTTCAAAAAAAAGTTGGTAATTAAAAAAGGAGTAGCACTTCTGATTAATTGAAAAAAGTAAGAATTAAATGCAAAAACTGAAGTCAAGGAATTTTAAGCAAGTTGGATCTCGAATTCCCCGAAACTAGAAAAGAATCTTCTAGACAAAAAATTTACAGATTTCTGACTAATAGTATGTGTTTTATATAAACATTCATTATATAAGGCAAACAA</canonical_amplicon>
		<polymorphic_amplicon>GGATGAGTATTTTTACGACTTGAATGGAATTTTTAAGGTTCAAAAAAAAGTTGGTAATTAAAAAAGGAGTAGCACTTCTGATTAATTGRAAAAAGTAAGAATTAAATGCAAAAACTGAAGTCAAGGAATTTTAAGCAAGTTGGATCTCGAATTCCCCGAAACTAGAAAAGAATCTTCTAGACAAAAAATTTACAGATTTCTGACTAATAGTATGTGTTTTATATAAACATTCATTATATAAGGCAAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27272</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>175948</contig_pos>
        <strand></strand>
        <context>tttgatctac[G/A]aaaaagtgcg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAAAAAGTGGGTCCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTAC</left_flank>
        <right_flank>AAAAAGTGCGGCAAAAACGTAATATTTCAGATTTTCGCCTCGTTCGAGCT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGTAAGAATTAAATGCAAAAACTGAAGTCAAGGAATTTTAAGCAAGTTGGATCTCGAATTCCCCGAAACTAGAAAAGAATCTTCTAGACAAAAAATTTACAGATTTCTGACTAATAGTATGTGTTTTATATAAACATTCATTATATAAGGCAAACAAATTGAGTGGGTCGAAAAGTACTCGGAATTGTCGAGGAAGATTAAGATTTTCATTAGATTCTTCACGTTTTCAACATGTGAGTCTAATCCTAGCATGTTAGGGCTTTATAATGGGAACAGAAAAGGTTTGAGGACAATTTTTTTGGTTTATCGCAAATATGAGATTTTTGAAAAATTGTCTACAGTTTTACAGAGATTGCAGAATATGTATATTACTGTATTCCCTTCAATAGACGCCCACTCAAATCGTCAACTTCGAGCTCAATTACCTCGGTTGCTATTGTCGAATTAAAAAAAGTGGGTCCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAACGTAATATTTCAGATTTTCGCCTCGTTCGAGCTACTTTCGTAATTAAGTTCGGTTTTTCGATAAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAATCTAAATTTTGTTCAGAAAATCCCACTAAATTCACAGAAAAAAGTTTCGTTTACTACCGTAGTGTTACTGGGACAAGGCCTCGAAAATTGACCGGGAAGCCGCCCGCGAAATTTTCCAGGTCCCACTTTTTTTAATTCGTCAATATAAGAGATATCAACAATTTGTCTACTGATAAATTATTGATGATTTTATGATAAACATTTTGACAGTTGACAACTTTTTGATATCTTTGACAGGAATCGAGATAATTCAGCTCAGAGTGGATAGTTTAGGTGAGCTTCTACTGGAATACGGTGATCATTAATTAATAAGGCAAACCTTAATCAATTTCAATCTTGAATTTTTACAAGATTGATAATCATAACAATGACCAA</canonical>
            <polymorphic>AAAAGTAAGAATTAAATGCAAAAACTGAAGTCAAGGAATTTTAAGCAAGTTGGATCTCGAATTCCCCGAAACTAGAAAAGAATCTTCTAGACAAAAAATTTACAGATTTCTGACTAATAGTATGTGTTTTATATAAACATTCATTATATAAGGCAAACAAATTGAGTGGGTCGAAAAGTACTCGGAATTGTCGAGGAAGATTAAGATTTTCATTAGATTCTTCACGTTTTCAACATGTGAGTCTAATCCTAGCATGTTAGGGCTTTATAATGGGAACAGAAAAGGTTTGAGGACAATTTTTTTGGTTTATCGCAAATATGAGATTTTTGAAAAATTGTCTACAGTTTTACAGAGATTGCAGAATATGTATATTACTGTATTCCCTTCAATAGACGCCCACTCAAATCGTCAACTTCGAGCTCAATTACCTCGGTTGCTATTGTCGAATTAAAAAAAGTGGGTCCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACRAAAAAGTGCGGCAAAAACGTAATATTTCAGATTTTCGCCTCGTTCGAGCTACTTTCGTAATTAAGTTCGGTTTTTCGATAAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAATCTAAATTTTGTTCAGAAAATCCCACTAAATTCACAGAAAAAAGTTTCGTTTACTACCGTAGTGTTACTGGGACAAGGCCTCGAAAATTGACCGGGAAGCCGCCCGCGAAATTTTCCAGGTCCCACTTTTTTTAATTCGTCAATATAAGAGATATCAACAATTTGTCTACTGATAAATTATTGATGATTTTATGATAAACATTTTGACAGTTGACAACTTTTTGATATCTTTGACAGGAATCGAGATAATTCAGCTCAGAGTGGATAGTTTAGGTGAGCTTCTACTGGAATACGGTGATCATTAATTAATAAGGCAAACCTTAATCAATTTCAATCTTGAATTTTTACAAGATTGATAATCATAACAATGACCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACTTCGAGCTCAATTACC</pcr_primer_p1>
		<pcr_primer_p2>AGATTGAAATTGATTAAGGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>553</pcr_amplicon_size>
		<canonical_amplicon>CAACTTCGAGCTCAATTACCTCGGTTGCTATTGTCGAATTAAAAAAAGTGGGTCCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAACGTAATATTTCAGATTTTCGCCTCGTTCGAGCTACTTTCGTAATTAAGTTCGGTTTTTCGATAAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAATCTAAATTTTGTTCAGAAAATCCCACTAAATTCACAGAAAAAAGTTTCGTTTACTACCGTAGTGTTACTGGGACAAGGCCTCGAAAATTGACCGGGAAGCCGCCCGCGAAATTTTCCAGGTCCCACTTTTTTTAATTCGTCAATATAAGAGATATCAACAATTTGTCTACTGATAAATTATTGATGATTTTATGATAAACATTTTGACAGTTGACAACTTTTTGATATCTTTGACAGGAATCGAGATAATTCAGCTCAGAGTGGATAGTTTAGGTGAGCTTCTACTGGAATACGGTGATCATTAATTAATAAGGCAAACCTTAATCAATTTCAATCT</canonical_amplicon>
		<polymorphic_amplicon>CAACTTCGAGCTCAATTACCTCGGTTGCTATTGTCGAATTAAAAAAAGTGGGTCCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACRAAAAAGTGCGGCAAAAACGTAATATTTCAGATTTTCGCCTCGTTCGAGCTACTTTCGTAATTAAGTTCGGTTTTTCGATAAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAATCTAAATTTTGTTCAGAAAATCCCACTAAATTCACAGAAAAAAGTTTCGTTTACTACCGTAGTGTTACTGGGACAAGGCCTCGAAAATTGACCGGGAAGCCGCCCGCGAAATTTTCCAGGTCCCACTTTTTTTAATTCGTCAATATAAGAGATATCAACAATTTGTCTACTGATAAATTATTGATGATTTTATGATAAACATTTTGACAGTTGACAACTTTTTGATATCTTTGACAGGAATCGAGATAATTCAGCTCAGAGTGGATAGTTTAGGTGAGCTTCTACTGGAATACGGTGATCATTAATTAATAAGGCAAACCTTAATCAATTTCAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27273</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>175997</contig_pos>
        <strand></strand>
        <context>ctcgttcgag[C/A]tactttcgta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CGAAAAAGTGCGGCAAAAACGTAATATTTCAGATTTTCGCCTCGTTCGAG</left_flank>
        <right_flank>TACTTTCGTAATTAAGTTCGGTTTTTCGATAAAAAACAGATTCTAAAGAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGATCTCGAATTCCCCGAAACTAGAAAAGAATCTTCTAGACAAAAAATTTACAGATTTCTGACTAATAGTATGTGTTTTATATAAACATTCATTATATAAGGCAAACAAATTGAGTGGGTCGAAAAGTACTCGGAATTGTCGAGGAAGATTAAGATTTTCATTAGATTCTTCACGTTTTCAACATGTGAGTCTAATCCTAGCATGTTAGGGCTTTATAATGGGAACAGAAAAGGTTTGAGGACAATTTTTTTGGTTTATCGCAAATATGAGATTTTTGAAAAATTGTCTACAGTTTTACAGAGATTGCAGAATATGTATATTACTGTATTCCCTTCAATAGACGCCCACTCAAATCGTCAACTTCGAGCTCAATTACCTCGGTTGCTATTGTCGAATTAAAAAAAGTGGGTCCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAACGTAATATTTCAGATTTTCGCCTCGTTCGAGCTACTTTCGTAATTAAGTTCGGTTTTTCGATAAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAATCTAAATTTTGTTCAGAAAATCCCACTAAATTCACAGAAAAAAGTTTCGTTTACTACCGTAGTGTTACTGGGACAAGGCCTCGAAAATTGACCGGGAAGCCGCCCGCGAAATTTTCCAGGTCCCACTTTTTTTAATTCGTCAATATAAGAGATATCAACAATTTGTCTACTGATAAATTATTGATGATTTTATGATAAACATTTTGACAGTTGACAACTTTTTGATATCTTTGACAGGAATCGAGATAATTCAGCTCAGAGTGGATAGTTTAGGTGAGCTTCTACTGGAATACGGTGATCATTAATTAATAAGGCAAACCTTAATCAATTTCAATCTTGAATTTTTACAAGATTGATAATCATAACAATGACCAAAGGTCCCACAACGACAACTATCGTAACCTAAAAATTTTTATTATTTCTA</canonical>
            <polymorphic>TTGGATCTCGAATTCCCCGAAACTAGAAAAGAATCTTCTAGACAAAAAATTTACAGATTTCTGACTAATAGTATGTGTTTTATATAAACATTCATTATATAAGGCAAACAAATTGAGTGGGTCGAAAAGTACTCGGAATTGTCGAGGAAGATTAAGATTTTCATTAGATTCTTCACGTTTTCAACATGTGAGTCTAATCCTAGCATGTTAGGGCTTTATAATGGGAACAGAAAAGGTTTGAGGACAATTTTTTTGGTTTATCGCAAATATGAGATTTTTGAAAAATTGTCTACAGTTTTACAGAGATTGCAGAATATGTATATTACTGTATTCCCTTCAATAGACGCCCACTCAAATCGTCAACTTCGAGCTCAATTACCTCGGTTGCTATTGTCGAATTAAAAAAAGTGGGTCCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAACGTAATATTTCAGATTTTCGCCTCGTTCGAGMTACTTTCGTAATTAAGTTCGGTTTTTCGATAAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAATCTAAATTTTGTTCAGAAAATCCCACTAAATTCACAGAAAAAAGTTTCGTTTACTACCGTAGTGTTACTGGGACAAGGCCTCGAAAATTGACCGGGAAGCCGCCCGCGAAATTTTCCAGGTCCCACTTTTTTTAATTCGTCAATATAAGAGATATCAACAATTTGTCTACTGATAAATTATTGATGATTTTATGATAAACATTTTGACAGTTGACAACTTTTTGATATCTTTGACAGGAATCGAGATAATTCAGCTCAGAGTGGATAGTTTAGGTGAGCTTCTACTGGAATACGGTGATCATTAATTAATAAGGCAAACCTTAATCAATTTCAATCTTGAATTTTTACAAGATTGATAATCATAACAATGACCAAAGGTCCCACAACGACAACTATCGTAACCTAAAAATTTTTATTATTTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>370 331 146 65 64 24</canonical_bands>
                <polymorphic_bands>395 370 146 65 24</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>213 157 155 155 146 65 64 24 21</canonical_bands>
                <polymorphic_bands>219 213 157 155 146 65 24 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACTTCGAGCTCAATTACC</pcr_primer_p1>
		<pcr_primer_p2>AGATTGAAATTGATTAAGGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>553</pcr_amplicon_size>
		<canonical_amplicon>CAACTTCGAGCTCAATTACCTCGGTTGCTATTGTCGAATTAAAAAAAGTGGGTCCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAACGTAATATTTCAGATTTTCGCCTCGTTCGAGCTACTTTCGTAATTAAGTTCGGTTTTTCGATAAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAATCTAAATTTTGTTCAGAAAATCCCACTAAATTCACAGAAAAAAGTTTCGTTTACTACCGTAGTGTTACTGGGACAAGGCCTCGAAAATTGACCGGGAAGCCGCCCGCGAAATTTTCCAGGTCCCACTTTTTTTAATTCGTCAATATAAGAGATATCAACAATTTGTCTACTGATAAATTATTGATGATTTTATGATAAACATTTTGACAGTTGACAACTTTTTGATATCTTTGACAGGAATCGAGATAATTCAGCTCAGAGTGGATAGTTTAGGTGAGCTTCTACTGGAATACGGTGATCATTAATTAATAAGGCAAACCTTAATCAATTTCAATCT</canonical_amplicon>
		<polymorphic_amplicon>CAACTTCGAGCTCAATTACCTCGGTTGCTATTGTCGAATTAAAAAAAGTGGGTCCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAACGTAATATTTCAGATTTTCGCCTCGTTCGAGMTACTTTCGTAATTAAGTTCGGTTTTTCGATAAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAATCTAAATTTTGTTCAGAAAATCCCACTAAATTCACAGAAAAAAGTTTCGTTTACTACCGTAGTGTTACTGGGACAAGGCCTCGAAAATTGACCGGGAAGCCGCCCGCGAAATTTTCCAGGTCCCACTTTTTTTAATTCGTCAATATAAGAGATATCAACAATTTGTCTACTGATAAATTATTGATGATTTTATGATAAACATTTTGACAGTTGACAACTTTTTGATATCTTTGACAGGAATCGAGATAATTCAGCTCAGAGTGGATAGTTTAGGTGAGCTTCTACTGGAATACGGTGATCATTAATTAATAAGGCAAACCTTAATCAATTTCAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27274</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>182629</contig_pos>
        <strand>+</strand>
        <context>GTTTCATATA[A/G]AAAGAAAAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATGAGAAGTAGTAACTTGTCTACCTTCTCCTTTCCAAAAGTTTCATATA</left_flank>
        <right_flank>AAAGAAAAGGCAGAACACTCCCTGGAGCTCGTTTGAAACTATGACAACAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATGGGGTCAAAATTGGAGTGCAAGAATTCAAATAACTTATCAGTAAACTGGCAAAGTTTCAAACTATTTAATCAAGTTTGAGCTGAGTTATCGCTTGTCCAAGTTGCTACTTCTTATGAAAATCACAAGAAACACTACGCCGTTCATCATTGGACAATCATAAAAATACCTAGACTTGAGGAATCTCTTTGAAAATTTTAGAAGCTTCGAATCATGCCTAAAATCGTATTTCTCTCAATTTTCGTGCTTCCAAGAAACTTATGTCCAAAGATATAACCGTTTTTATTAGTCCGGGTAATTGTGCGCCTATCATAATGCAAAAATATTCCAAAAAAGGCAGACTAGTTTTCAAAAAATATTTTTTTGATTGACAAAATTTATTTTCTTTATGTCAACTTCTGGTTTTTTTCCTTTTTCAATCAAAAGTATGAAAAACCAGCGATAATTTATGAGAAGTAGTAACTTGTCTACCTTCTCCTTTCCAAAAGTTTCATATAAAAAGAAAAGGCAGAACACTCCCTGGAGCTCGTTTGAAACTATGACAACATCAGCTTTCACTTCGAGTAAACATGATGAGTGCCACTTCGGTGACGTGGGTATACAGACATCACGAAGACATCCCGAAGAGAAGTAGAAATTATTTTTGTGTTAGGGAAATCCTAGGGGAAGAAATTCCTGACAAGGCAAGATGATCATGCTAATTGCGCAATCATGAGCATACAAAGACGTCAAACAAATGTTTATTTACAGATAATGTTTATGTACAGAGTATCTAGTATCAATCATCTCGTTGAGTTTTTCAATCGAATAGTGACCGTATCGTTTTCCAGATCCCCGACATGTTCCAACCCGACTCCGACTTGTTGTCTGACTTGACTTCTTATTTCTGATTTCAGCTCCTCGTCGTCCACATTCTAAAAAAAATACAAGATATTCTTATTTTTGGAATATTTAGAAGCAAGTAATTAACTAGCAAACGGATATACCGTATGACCTTC</canonical>
            <polymorphic>TAATGGGGTCAAAATTGGAGTGCAAGAATTCAAATAACTTATCAGTAAACTGGCAAAGTTTCAAACTATTTAATCAAGTTTGAGCTGAGTTATCGCTTGTCCAAGTTGCTACTTCTTATGAAAATCACAAGAAACACTACGCCGTTCATCATTGGACAATCATAAAAATACCTAGACTTGAGGAATCTCTTTGAAAATTTTAGAAGCTTCGAATCATGCCTAAAATCGTATTTCTCTCAATTTTCGTGCTTCCAAGAAACTTATGTCCAAAGATATAACCGTTTTTATTAGTCCGGGTAATTGTGCGCCTATCATAATGCAAAAATATTCCAAAAAAGGCAGACTAGTTTTCAAAAAATATTTTTTTGATTGACAAAATTTATTTTCTTTATGTCAACTTCTGGTTTTTTTCCTTTTTCAATCAAAAGTATGAAAAACCAGCGATAATTTATGAGAAGTAGTAACTTGTCTACCTTCTCCTTTCCAAAAGTTTCATATARAAAGAAAAGGCAGAACACTCCCTGGAGCTCGTTTGAAACTATGACAACATCAGCTTTCACTTCGAGTAAACATGATGAGTGCCACTTCGGTGACGTGGGTATACAGACATCACGAAGACATCCCGAAGAGAAGTAGAAATTATTTTTGTGTTAGGGAAATCCTAGGGGAAGAAATTCCTGACAAGGCAAGATGATCATGCTAATTGCGCAATCATGAGCATACAAAGACGTCAAACAAATGTTTATTTACAGATAATGTTTATGTACAGAGTATCTAGTATCAATCATCTCGTTGAGTTTTTCAATCGAATAGTGACCGTATCGTTTTCCAGATCCCCGACATGTTCCAACCCGACTCCGACTTGTTGTCTGACTTGACTTCTTATTTCTGATTTCAGCTCCTCGTCGTCCACATTCTAAAAAAAATACAAGATATTCTTATTTTTGGAATATTTAGAAGCAAGTAATTAACTAGCAAACGGATATACCGTATGACCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTTTTCAATCAAAAGTATGAA</pcr_primer_p1>
		<pcr_primer_p2>GGATTTCCCTAACACAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCTTTTTCAATCAAAAGTATGAAAAACCAGCGATAATTTATGAGAAGTAGTAACTTGTCTACCTTCTCCTTTCCAAAAGTTTCATATAAAAAGAAAAGGCAGAACACTCCCTGGAGCTCGTTTGAAACTATGACAACATCAGCTTTCACTTCGAGTAAACATGATGAGTGCCACTTCGGTGACGTGGGTATACAGACATCACGAAGACATCCCGAAGAGAAGTAGAAATTATTTTTGTGTTAGGGAAATCC</canonical_amplicon>
		<polymorphic_amplicon>CCTTTTTCAATCAAAAGTATGAAAAACCAGCGATAATTTATGAGAAGTAGTAACTTGTCTACCTTCTCCTTTCCAAAAGTTTCATATARAAAGAAAAGGCAGAACACTCCCTGGAGCTCGTTTGAAACTATGACAACATCAGCTTTCACTTCGAGTAAACATGATGAGTGCCACTTCGGTGACGTGGGTATACAGACATCACGAAGACATCCCGAAGAGAAGTAGAAATTATTTTTGTGTTAGGGAAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27275</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>196179</contig_pos>
        <strand></strand>
        <context>taaattatca[T/C]ggttcctatg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTGCCCGAACCATCCTCTTCAAGAGGATTCCTCTTCGAGCTAAATTATCA</left_flank>
        <right_flank>GGTTCCTATGAGAGATATCAAAAATCTGTCAACTGATAGAATGTTTTTGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTAAATGCCAAAAAAGTAAAGTTTGTTTCTATGAGAGGGGAAGATGTTCGACGCAAACGGTGGTGCTTAGGTGGTCTAGAATTCAAGGAAACCCACGTAAGACGACGTTCGTGACGTTGGAAGGAAACTTAGGGATCAGTATGTCATAGTGCCAAAAAACCAGAATACAAAGGGGTCGTTGAGCAAGTTTTAGGCAGGTGATAAGTATTGAAAAAATTCCTAAATAATTTTAACAAACTACAAATGGTTTAAAAGCCTCACAACAGACTAGGGATACTGTAGTTGTGATGAGATCTACAGAATGCATATTTTGAAAAGATAATGAACTTTCTGACACAAAAAGAACCCTTTGAAAGTTGATAACATATCTTCAGTTAAACGTTCTTGATTTCATTTTTCAGAAATTCTAGAACCATTAATCAATTTACAGTGTTTCCGCTAATGAAGCCTGCCCGAACCATCCTCTTCAAGAGGATTCCTCTTCGAGCTAAATTATCATGGTTCCTATGAGAGATATCAAAAATCTGTCAACTGATAGAATGTTTTTGATATAATGATAAAAATGTATATGTTGAACAAATTTTTGATATCTTTCTCAGGAATCGAGATAGATGAGCTCAAAGCTGACGGTTCAGATAAGCTTCTATTAGAAAAAAAAATATAACAAAAAACCCTAAGAAACAGAAATCTACAAAAATTGACTGGTGATCAGCGGCGAACTCCAAATTAACGACCTATTCAAGTGTCAAGTGGATGTTTACACCAAACAACAATCTAAAACTAAATCAACTATCCTGAAAACCAAACACACATATTTATTTACTATCTCTTCTCCGCCTTATTTGTAGAAAAAATCTCTCAAAATCCAAACATCAATGTCAACAATTCAAGGTTTGACAGCGTCGGGGACGACCTCGCGGGATGGATGGAACACGAAAACACAAAACTGACTACTGTGTAATTGATTAGTTTAGCAGGAAAGGAACTCTTTTTTCTTTG</canonical>
            <polymorphic>GCTAAATGCCAAAAAAGTAAAGTTTGTTTCTATGAGAGGGGAAGATGTTCGACGCAAACGGTGGTGCTTAGGTGGTCTAGAATTCAAGGAAACCCACGTAAGACGACGTTCGTGACGTTGGAAGGAAACTTAGGGATCAGTATGTCATAGTGCCAAAAAACCAGAATACAAAGGGGTCGTTGAGCAAGTTTTAGGCAGGTGATAAGTATTGAAAAAATTCCTAAATAATTTTAACAAACTACAAATGGTTTAAAAGCCTCACAACAGACTAGGGATACTGTAGTTGTGATGAGATCTACAGAATGCATATTTTGAAAAGATAATGAACTTTCTGACACAAAAAGAACCCTTTGAAAGTTGATAACATATCTTCAGTTAAACGTTCTTGATTTCATTTTTCAGAAATTCTAGAACCATTAATCAATTTACAGTGTTTCCGCTAATGAAGCCTGCCCGAACCATCCTCTTCAAGAGGATTCCTCTTCGAGCTAAATTATCAYGGTTCCTATGAGAGATATCAAAAATCTGTCAACTGATAGAATGTTTTTGATATAATGATAAAAATGTATATGTTGAACAAATTTTTGATATCTTTCTCAGGAATCGAGATAGATGAGCTCAAAGCTGACGGTTCAGATAAGCTTCTATTAGAAAAAAAAATATAACAAAAAACCCTAAGAAACAGAAATCTACAAAAATTGACTGGTGATCAGCGGCGAACTCCAAATTAACGACCTATTCAAGTGTCAAGTGGATGTTTACACCAAACAACAATCTAAAACTAAATCAACTATCCTGAAAACCAAACACACATATTTATTTACTATCTCTTCTCCGCCTTATTTGTAGAAAAAATCTCTCAAAATCCAAACATCAATGTCAACAATTCAAGGTTTGACAGCGTCGGGGACGACCTCGCGGGATGGATGGAACACGAAAACACAAAACTGACTACTGTGTAATTGATTAGTTTAGCAGGAAAGGAACTCTTTTTTCTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTGTTTCCGCTAATGAAG</pcr_primer_p1>
		<pcr_primer_p2>GATTTCTGTTTCTTAGGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>CAGTGTTTCCGCTAATGAAGCCTGCCCGAACCATCCTCTTCAAGAGGATTCCTCTTCGAGCTAAATTATCATGGTTCCTATGAGAGATATCAAAAATCTGTCAACTGATAGAATGTTTTTGATATAATGATAAAAATGTATATGTTGAACAAATTTTTGATATCTTTCTCAGGAATCGAGATAGATGAGCTCAAAGCTGACGGTTCAGATAAGCTTCTATTAGAAAAAAAAATATAACAAAAAACCCTAAGAAACAGAAATC</canonical_amplicon>
		<polymorphic_amplicon>CAGTGTTTCCGCTAATGAAGCCTGCCCGAACCATCCTCTTCAAGAGGATTCCTCTTCGAGCTAAATTATCAYGGTTCCTATGAGAGATATCAAAAATCTGTCAACTGATAGAATGTTTTTGATATAATGATAAAAATGTATATGTTGAACAAATTTTTGATATCTTTCTCAGGAATCGAGATAGATGAGCTCAAAGCTGACGGTTCAGATAAGCTTCTATTAGAAAAAAAAATATAACAAAAAACCCTAAGAAACAGAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27276</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>196261</contig_pos>
        <strand></strand>
        <context>gttgaacaaa[T/C]ttttgatatc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACTGATAGAATGTTTTTGATATAATGATAAAAATGTATATGTTGAACAAA</left_flank>
        <right_flank>TTTTGATATCTTTCTCAGGAATCGAGATAGATGAGCTCAAAGCTGACGGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAAGGAAACCCACGTAAGACGACGTTCGTGACGTTGGAAGGAAACTTAGGGATCAGTATGTCATAGTGCCAAAAAACCAGAATACAAAGGGGTCGTTGAGCAAGTTTTAGGCAGGTGATAAGTATTGAAAAAATTCCTAAATAATTTTAACAAACTACAAATGGTTTAAAAGCCTCACAACAGACTAGGGATACTGTAGTTGTGATGAGATCTACAGAATGCATATTTTGAAAAGATAATGAACTTTCTGACACAAAAAGAACCCTTTGAAAGTTGATAACATATCTTCAGTTAAACGTTCTTGATTTCATTTTTCAGAAATTCTAGAACCATTAATCAATTTACAGTGTTTCCGCTAATGAAGCCTGCCCGAACCATCCTCTTCAAGAGGATTCCTCTTCGAGCTAAATTATCATGGTTCCTATGAGAGATATCAAAAATCTGTCAACTGATAGAATGTTTTTGATATAATGATAAAAATGTATATGTTGAACAAATTTTTGATATCTTTCTCAGGAATCGAGATAGATGAGCTCAAAGCTGACGGTTCAGATAAGCTTCTATTAGAAAAAAAAATATAACAAAAAACCCTAAGAAACAGAAATCTACAAAAATTGACTGGTGATCAGCGGCGAACTCCAAATTAACGACCTATTCAAGTGTCAAGTGGATGTTTACACCAAACAACAATCTAAAACTAAATCAACTATCCTGAAAACCAAACACACATATTTATTTACTATCTCTTCTCCGCCTTATTTGTAGAAAAAATCTCTCAAAATCCAAACATCAATGTCAACAATTCAAGGTTTGACAGCGTCGGGGACGACCTCGCGGGATGGATGGAACACGAAAACACAAAACTGACTACTGTGTAATTGATTAGTTTAGCAGGAAAGGAACTCTTTTTTCTTTGTTTTCCTTCTATTTCGGGGAACTGTTATCACAGCTGAACAATAGGACAGAAAAAGAACGAACATCAGAAAAGAACTGACCTT</canonical>
            <polymorphic>TTCAAGGAAACCCACGTAAGACGACGTTCGTGACGTTGGAAGGAAACTTAGGGATCAGTATGTCATAGTGCCAAAAAACCAGAATACAAAGGGGTCGTTGAGCAAGTTTTAGGCAGGTGATAAGTATTGAAAAAATTCCTAAATAATTTTAACAAACTACAAATGGTTTAAAAGCCTCACAACAGACTAGGGATACTGTAGTTGTGATGAGATCTACAGAATGCATATTTTGAAAAGATAATGAACTTTCTGACACAAAAAGAACCCTTTGAAAGTTGATAACATATCTTCAGTTAAACGTTCTTGATTTCATTTTTCAGAAATTCTAGAACCATTAATCAATTTACAGTGTTTCCGCTAATGAAGCCTGCCCGAACCATCCTCTTCAAGAGGATTCCTCTTCGAGCTAAATTATCATGGTTCCTATGAGAGATATCAAAAATCTGTCAACTGATAGAATGTTTTTGATATAATGATAAAAATGTATATGTTGAACAAAYTTTTGATATCTTTCTCAGGAATCGAGATAGATGAGCTCAAAGCTGACGGTTCAGATAAGCTTCTATTAGAAAAAAAAATATAACAAAAAACCCTAAGAAACAGAAATCTACAAAAATTGACTGGTGATCAGCGGCGAACTCCAAATTAACGACCTATTCAAGTGTCAAGTGGATGTTTACACCAAACAACAATCTAAAACTAAATCAACTATCCTGAAAACCAAACACACATATTTATTTACTATCTCTTCTCCGCCTTATTTGTAGAAAAAATCTCTCAAAATCCAAACATCAATGTCAACAATTCAAGGTTTGACAGCGTCGGGGACGACCTCGCGGGATGGATGGAACACGAAAACACAAAACTGACTACTGTGTAATTGATTAGTTTAGCAGGAAAGGAACTCTTTTTTCTTTGTTTTCCTTCTATTTCGGGGAACTGTTATCACAGCTGAACAATAGGACAGAAAAAGAACGAACATCAGAAAAGAACTGACCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>503 188 176 133</canonical_bands>
                <polymorphic_bands>679 188 133</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>177 159 133 122 117 88 76 69 29 19 11</canonical_bands>
                <polymorphic_bands>205 177 159 133 122 76 69 29 19 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTGTTTCCGCTAATGAAG</pcr_primer_p1>
		<pcr_primer_p2>GATTTCTGTTTCTTAGGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>CAGTGTTTCCGCTAATGAAGCCTGCCCGAACCATCCTCTTCAAGAGGATTCCTCTTCGAGCTAAATTATCATGGTTCCTATGAGAGATATCAAAAATCTGTCAACTGATAGAATGTTTTTGATATAATGATAAAAATGTATATGTTGAACAAATTTTTGATATCTTTCTCAGGAATCGAGATAGATGAGCTCAAAGCTGACGGTTCAGATAAGCTTCTATTAGAAAAAAAAATATAACAAAAAACCCTAAGAAACAGAAATC</canonical_amplicon>
		<polymorphic_amplicon>CAGTGTTTCCGCTAATGAAGCCTGCCCGAACCATCCTCTTCAAGAGGATTCCTCTTCGAGCTAAATTATCATGGTTCCTATGAGAGATATCAAAAATCTGTCAACTGATAGAATGTTTTTGATATAATGATAAAAATGTATATGTTGAACAAAYTTTTGATATCTTTCTCAGGAATCGAGATAGATGAGCTCAAAGCTGACGGTTCAGATAAGCTTCTATTAGAAAAAAAAATATAACAAAAAACCCTAAGAAACAGAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27277</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>196287</contig_pos>
        <strand>+</strand>
        <context>caggaatcga[A/G]atagatgagc</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAAAAATGTATATGTTGAACAAATTTTTGATATCTTTCTCAGGAATCGA</left_flank>
        <right_flank>ATAGATGAGCTCAAAGCTGACGGTTCAGATAAGCTTCTATTAGAAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGTGACGTTGGAAGGAAACTTAGGGATCAGTATGTCATAGTGCCAAAAAACCAGAATACAAAGGGGTCGTTGAGCAAGTTTTAGGCAGGTGATAAGTATTGAAAAAATTCCTAAATAATTTTAACAAACTACAAATGGTTTAAAAGCCTCACAACAGACTAGGGATACTGTAGTTGTGATGAGATCTACAGAATGCATATTTTGAAAAGATAATGAACTTTCTGACACAAAAAGAACCCTTTGAAAGTTGATAACATATCTTCAGTTAAACGTTCTTGATTTCATTTTTCAGAAATTCTAGAACCATTAATCAATTTACAGTGTTTCCGCTAATGAAGCCTGCCCGAACCATCCTCTTCAAGAGGATTCCTCTTCGAGCTAAATTATCATGGTTCCTATGAGAGATATCAAAAATCTGTCAACTGATAGAATGTTTTTGATATAATGATAAAAATGTATATGTTGAACAAATTTTTGATATCTTTCTCAGGAATCGAGATAGATGAGCTCAAAGCTGACGGTTCAGATAAGCTTCTATTAGAAAAAAAAATATAACAAAAAACCCTAAGAAACAGAAATCTACAAAAATTGACTGGTGATCAGCGGCGAACTCCAAATTAACGACCTATTCAAGTGTCAAGTGGATGTTTACACCAAACAACAATCTAAAACTAAATCAACTATCCTGAAAACCAAACACACATATTTATTTACTATCTCTTCTCCGCCTTATTTGTAGAAAAAATCTCTCAAAATCCAAACATCAATGTCAACAATTCAAGGTTTGACAGCGTCGGGGACGACCTCGCGGGATGGATGGAACACGAAAACACAAAACTGACTACTGTGTAATTGATTAGTTTAGCAGGAAAGGAACTCTTTTTTCTTTGTTTTCCTTCTATTTCGGGGAACTGTTATCACAGCTGAACAATAGGACAGAAAAAGAACGAACATCAGAAAAGAACTGACCTTCGATATCATCAAGCTATCAATCTACT</canonical>
            <polymorphic>TTCGTGACGTTGGAAGGAAACTTAGGGATCAGTATGTCATAGTGCCAAAAAACCAGAATACAAAGGGGTCGTTGAGCAAGTTTTAGGCAGGTGATAAGTATTGAAAAAATTCCTAAATAATTTTAACAAACTACAAATGGTTTAAAAGCCTCACAACAGACTAGGGATACTGTAGTTGTGATGAGATCTACAGAATGCATATTTTGAAAAGATAATGAACTTTCTGACACAAAAAGAACCCTTTGAAAGTTGATAACATATCTTCAGTTAAACGTTCTTGATTTCATTTTTCAGAAATTCTAGAACCATTAATCAATTTACAGTGTTTCCGCTAATGAAGCCTGCCCGAACCATCCTCTTCAAGAGGATTCCTCTTCGAGCTAAATTATCATGGTTCCTATGAGAGATATCAAAAATCTGTCAACTGATAGAATGTTTTTGATATAATGATAAAAATGTATATGTTGAACAAATTTTTGATATCTTTCTCAGGAATCGARATAGATGAGCTCAAAGCTGACGGTTCAGATAAGCTTCTATTAGAAAAAAAAATATAACAAAAAACCCTAAGAAACAGAAATCTACAAAAATTGACTGGTGATCAGCGGCGAACTCCAAATTAACGACCTATTCAAGTGTCAAGTGGATGTTTACACCAAACAACAATCTAAAACTAAATCAACTATCCTGAAAACCAAACACACATATTTATTTACTATCTCTTCTCCGCCTTATTTGTAGAAAAAATCTCTCAAAATCCAAACATCAATGTCAACAATTCAAGGTTTGACAGCGTCGGGGACGACCTCGCGGGATGGATGGAACACGAAAACACAAAACTGACTACTGTGTAATTGATTAGTTTAGCAGGAAAGGAACTCTTTTTTCTTTGTTTTCCTTCTATTTCGGGGAACTGTTATCACAGCTGAACAATAGGACAGAAAAAGAACGAACATCAGAAAAGAACTGACCTTCGATATCATCAAGCTATCAATCTACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>313 274 190 129 61 23 7 3</canonical_bands>
                <polymorphic_bands>313 274 197 129 61 23 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTGTTTCCGCTAATGAAG</pcr_primer_p1>
		<pcr_primer_p2>GATTTCTGTTTCTTAGGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>CAGTGTTTCCGCTAATGAAGCCTGCCCGAACCATCCTCTTCAAGAGGATTCCTCTTCGAGCTAAATTATCATGGTTCCTATGAGAGATATCAAAAATCTGTCAACTGATAGAATGTTTTTGATATAATGATAAAAATGTATATGTTGAACAAATTTTTGATATCTTTCTCAGGAATCGAGATAGATGAGCTCAAAGCTGACGGTTCAGATAAGCTTCTATTAGAAAAAAAAATATAACAAAAAACCCTAAGAAACAGAAATC</canonical_amplicon>
		<polymorphic_amplicon>CAGTGTTTCCGCTAATGAAGCCTGCCCGAACCATCCTCTTCAAGAGGATTCCTCTTCGAGCTAAATTATCATGGTTCCTATGAGAGATATCAAAAATCTGTCAACTGATAGAATGTTTTTGATATAATGATAAAAATGTATATGTTGAACAAATTTTTGATATCTTTCTCAGGAATCGARATAGATGAGCTCAAAGCTGACGGTTCAGATAAGCTTCTATTAGAAAAAAAAATATAACAAAAAACCCTAAGAAACAGAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27278</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>196326</contig_pos>
        <strand></strand>
        <context>ataagcttct[A/C]ttaGAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCAGGAATCGAGATAGATGAGCTCAAAGCTGACGGTTCAGATAAGCTTCT</left_flank>
        <right_flank>TTAGAAAAAAAAATATAACAAAAAACCCTAAGAAACAGAAATCTACAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTGCCAAAAAACCAGAATACAAAGGGGTCGTTGAGCAAGTTTTAGGCAGGTGATAAGTATTGAAAAAATTCCTAAATAATTTTAACAAACTACAAATGGTTTAAAAGCCTCACAACAGACTAGGGATACTGTAGTTGTGATGAGATCTACAGAATGCATATTTTGAAAAGATAATGAACTTTCTGACACAAAAAGAACCCTTTGAAAGTTGATAACATATCTTCAGTTAAACGTTCTTGATTTCATTTTTCAGAAATTCTAGAACCATTAATCAATTTACAGTGTTTCCGCTAATGAAGCCTGCCCGAACCATCCTCTTCAAGAGGATTCCTCTTCGAGCTAAATTATCATGGTTCCTATGAGAGATATCAAAAATCTGTCAACTGATAGAATGTTTTTGATATAATGATAAAAATGTATATGTTGAACAAATTTTTGATATCTTTCTCAGGAATCGAGATAGATGAGCTCAAAGCTGACGGTTCAGATAAGCTTCTATTAGAAAAAAAAATATAACAAAAAACCCTAAGAAACAGAAATCTACAAAAATTGACTGGTGATCAGCGGCGAACTCCAAATTAACGACCTATTCAAGTGTCAAGTGGATGTTTACACCAAACAACAATCTAAAACTAAATCAACTATCCTGAAAACCAAACACACATATTTATTTACTATCTCTTCTCCGCCTTATTTGTAGAAAAAATCTCTCAAAATCCAAACATCAATGTCAACAATTCAAGGTTTGACAGCGTCGGGGACGACCTCGCGGGATGGATGGAACACGAAAACACAAAACTGACTACTGTGTAATTGATTAGTTTAGCAGGAAAGGAACTCTTTTTTCTTTGTTTTCCTTCTATTTCGGGGAACTGTTATCACAGCTGAACAATAGGACAGAAAAAGAACGAACATCAGAAAAGAACTGACCTTCGATATCATCAAGCTATCAATCTACTTTTCTCCTCTATCGAAAAAAAGAACGAAGGTGCGGAAAA</canonical>
            <polymorphic>TAGTGCCAAAAAACCAGAATACAAAGGGGTCGTTGAGCAAGTTTTAGGCAGGTGATAAGTATTGAAAAAATTCCTAAATAATTTTAACAAACTACAAATGGTTTAAAAGCCTCACAACAGACTAGGGATACTGTAGTTGTGATGAGATCTACAGAATGCATATTTTGAAAAGATAATGAACTTTCTGACACAAAAAGAACCCTTTGAAAGTTGATAACATATCTTCAGTTAAACGTTCTTGATTTCATTTTTCAGAAATTCTAGAACCATTAATCAATTTACAGTGTTTCCGCTAATGAAGCCTGCCCGAACCATCCTCTTCAAGAGGATTCCTCTTCGAGCTAAATTATCATGGTTCCTATGAGAGATATCAAAAATCTGTCAACTGATAGAATGTTTTTGATATAATGATAAAAATGTATATGTTGAACAAATTTTTGATATCTTTCTCAGGAATCGAGATAGATGAGCTCAAAGCTGACGGTTCAGATAAGCTTCTMTTAGAAAAAAAAATATAACAAAAAACCCTAAGAAACAGAAATCTACAAAAATTGACTGGTGATCAGCGGCGAACTCCAAATTAACGACCTATTCAAGTGTCAAGTGGATGTTTACACCAAACAACAATCTAAAACTAAATCAACTATCCTGAAAACCAAACACACATATTTATTTACTATCTCTTCTCCGCCTTATTTGTAGAAAAAATCTCTCAAAATCCAAACATCAATGTCAACAATTCAAGGTTTGACAGCGTCGGGGACGACCTCGCGGGATGGATGGAACACGAAAACACAAAACTGACTACTGTGTAATTGATTAGTTTAGCAGGAAAGGAACTCTTTTTTCTTTGTTTTCCTTCTATTTCGGGGAACTGTTATCACAGCTGAACAATAGGACAGAAAAAGAACGAACATCAGAAAAGAACTGACCTTCGATATCATCAAGCTATCAATCTACTTTTCTCCTCTATCGAAAAAAAGAACGAAGGTGCGGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTGTTTCCGCTAATGAAG</pcr_primer_p1>
		<pcr_primer_p2>TCAATTTTTGTAGATTTCTGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>CAGTGTTTCCGCTAATGAAGCCTGCCCGAACCATCCTCTTCAAGAGGATTCCTCTTCGAGCTAAATTATCATGGTTCCTATGAGAGATATCAAAAATCTGTCAACTGATAGAATGTTTTTGATATAATGATAAAAATGTATATGTTGAACAAATTTTTGATATCTTTCTCAGGAATCGAGATAGATGAGCTCAAAGCTGACGGTTCAGATAAGCTTCTATTAGAAAAAAAAATATAACAAAAAACCCTAAGAAACAGAAATCTACAAAAATTGA</canonical_amplicon>
		<polymorphic_amplicon>CAGTGTTTCCGCTAATGAAGCCTGCCCGAACCATCCTCTTCAAGAGGATTCCTCTTCGAGCTAAATTATCATGGTTCCTATGAGAGATATCAAAAATCTGTCAACTGATAGAATGTTTTTGATATAATGATAAAAATGTATATGTTGAACAAATTTTTGATATCTTTCTCAGGAATCGAGATAGATGAGCTCAAAGCTGACGGTTCAGATAAGCTTCTMTTAGAAAAAAAAATATAACAAAAAACCCTAAGAAACAGAAATCTACAAAAATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27279</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>196582</contig_pos>
        <strand>+</strand>
        <context>GTTTGACAGC[A/G]TCGGGGACGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATCTCTCAAAATCCAAACATCAATGTCAACAATTCAAGGTTTGACAGC</left_flank>
        <right_flank>TCGGGGACGACCTCGCGGGATGGATGGAACACGAAAACACAAAACTGACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTCTAGAACCATTAATCAATTTACAGTGTTTCCGCTAATGAAGCCTGCCCGAACCATCCTCTTCAAGAGGATTCCTCTTCGAGCTAAATTATCATGGTTCCTATGAGAGATATCAAAAATCTGTCAACTGATAGAATGTTTTTGATATAATGATAAAAATGTATATGTTGAACAAATTTTTGATATCTTTCTCAGGAATCGAGATAGATGAGCTCAAAGCTGACGGTTCAGATAAGCTTCTATTAGAAAAAAAAATATAACAAAAAACCCTAAGAAACAGAAATCTACAAAAATTGACTGGTGATCAGCGGCGAACTCCAAATTAACGACCTATTCAAGTGTCAAGTGGATGTTTACACCAAACAACAATCTAAAACTAAATCAACTATCCTGAAAACCAAACACACATATTTATTTACTATCTCTTCTCCGCCTTATTTGTAGAAAAAATCTCTCAAAATCCAAACATCAATGTCAACAATTCAAGGTTTGACAGCGTCGGGGACGACCTCGCGGGATGGATGGAACACGAAAACACAAAACTGACTACTGTGTAATTGATTAGTTTAGCAGGAAAGGAACTCTTTTTTCTTTGTTTTCCTTCTATTTCGGGGAACTGTTATCACAGCTGAACAATAGGACAGAAAAAGAACGAACATCAGAAAAGAACTGACCTTCGATATCATCAAGCTATCAATCTACTTTTCTCCTCTATCGAAAAAAAGAACGAAGGTGCGGAAAAAGGTAAACGGGAGTGTGTCGACACATTATAACTAGTAACAGAGAAGAGACGAGACCAAAAACCTCCCAACTTCGTTGTGGGAAAAGAGGAAGAAGAAGAAAAACGAAAAGACTAGAGGCCGACTATGAAACAGAAAATAGCGTTTTATGGTGAGAGCATTAGAAAAGCATGCCGCCTGAGAGAGACCCACACCAGGCAGTGGGGACGCCAGCGTCAGCTCTGCGTCTCCCCAATAAATGATAGTATTTTGTCTTGC</canonical>
            <polymorphic>AATTCTAGAACCATTAATCAATTTACAGTGTTTCCGCTAATGAAGCCTGCCCGAACCATCCTCTTCAAGAGGATTCCTCTTCGAGCTAAATTATCATGGTTCCTATGAGAGATATCAAAAATCTGTCAACTGATAGAATGTTTTTGATATAATGATAAAAATGTATATGTTGAACAAATTTTTGATATCTTTCTCAGGAATCGAGATAGATGAGCTCAAAGCTGACGGTTCAGATAAGCTTCTATTAGAAAAAAAAATATAACAAAAAACCCTAAGAAACAGAAATCTACAAAAATTGACTGGTGATCAGCGGCGAACTCCAAATTAACGACCTATTCAAGTGTCAAGTGGATGTTTACACCAAACAACAATCTAAAACTAAATCAACTATCCTGAAAACCAAACACACATATTTATTTACTATCTCTTCTCCGCCTTATTTGTAGAAAAAATCTCTCAAAATCCAAACATCAATGTCAACAATTCAAGGTTTGACAGCRTCGGGGACGACCTCGCGGGATGGATGGAACACGAAAACACAAAACTGACTACTGTGTAATTGATTAGTTTAGCAGGAAAGGAACTCTTTTTTCTTTGTTTTCCTTCTATTTCGGGGAACTGTTATCACAGCTGAACAATAGGACAGAAAAAGAACGAACATCAGAAAAGAACTGACCTTCGATATCATCAAGCTATCAATCTACTTTTCTCCTCTATCGAAAAAAAGAACGAAGGTGCGGAAAAAGGTAAACGGGAGTGTGTCGACACATTATAACTAGTAACAGAGAAGAGACGAGACCAAAAACCTCCCAACTTCGTTGTGGGAAAAGAGGAAGAAGAAGAAAAACGAAAAGACTAGAGGCCGACTATGAAACAGAAAATAGCGTTTTATGGTGAGAGCATTAGAAAAGCATGCCGCCTGAGAGAGACCCACACCAGGCAGTGGGGACGCCAGCGTCAGCTCTGCGTCTCCCCAATAAATGATAGTATTTTGTCTTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNGTC</site>
                <isoschizomers>
                    <enzyme>AspI</enzyme>
                    <enzyme>PflFI</enzyme>
                    <enzyme>PsyI</enzyme>
                    <enzyme>TelI</enzyme>
                    <enzyme>Tth111I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTCAAGTGTCAAGTGGATGT</pcr_primer_p1>
		<pcr_primer_p2>CCTTTCCTGCTAAACTAATCAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTATTCAAGTGTCAAGTGGATGTTTACACCAAACAACAATCTAAAACTAAATCAACTATCCTGAAAACCAAACACACATATTTATTTACTATCTCTTCTCCGCCTTATTTGTAGAAAAAATCTCTCAAAATCCAAACATCAATGTCAACAATTCAAGGTTTGACAGCGTCGGGGACGACCTCGCGGGATGGATGGAACACGAAAACACAAAACTGACTACTGTGTAATTGATTAGTTTAGCAGGAAAGG</canonical_amplicon>
		<polymorphic_amplicon>CTATTCAAGTGTCAAGTGGATGTTTACACCAAACAACAATCTAAAACTAAATCAACTATCCTGAAAACCAAACACACATATTTATTTACTATCTCTTCTCCGCCTTATTTGTAGAAAAAATCTCTCAAAATCCAAACATCAATGTCAACAATTCAAGGTTTGACAGCRTCGGGGACGACCTCGCGGGATGGATGGAACACGAAAACACAAAACTGACTACTGTGTAATTGATTAGTTTAGCAGGAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27280</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>199394</contig_pos>
        <strand>+</strand>
        <context>GTCCCAAWTT[A/T]CATGGAAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAAATAAATAGAACATATTTTGAACAATTAGTTTTCAAAGTCCCAAATT</left_flank>
        <right_flank>CATGGAAAAGACAATCATCGTTTATAGACACTAAATTAAACAGATACTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTGGTAGATGCTATCTACTCGCTGCTGAAGACGCCCGTCAACTCGTGTCCCCTAACTATTTGTAAGTTTGTTATGAATGTTTAAAGGTAACAGCAAGAAAAAAGAGAGAAAAGGAGTAGGGGCAGGAAATGATTATCTTTTTTCTTTTTTGTCGATGGATAATGTTTCGAATTAGAACTTGCTTCGCCGAGCAGCACTTCCTTCCAACAACGACGGATAATGCAAAAGAATTCAAGAAAAGAAAAAAGTTCAACGAAAAAAGAGAAAATTTCAAAAAACATCGCTGAAAAGTCATTGAAAAAAACGCAAAAATTCTGCGGTTTCCCACGAACTGTACACGAGGACAACAGTAGCGCGCATTTGCATACCGCCAAATTGACTGAAAATTGCTCGTAATTATAGTCTGAAATGCCAGCTTACACTGAATCAAAATATTTTATTTTAAACTGAAATAAATAGAACATATTTTGAACAATTAGTTTTCAAAGTCCCAAATTCCATGGAAAAGACAATCATCGTTTATAGACACTAAATTAAACAGATACTATTTCAGTCAAGACATCCTCAATGCATCATTCCTCATCTCTGAACCACTGCTTTCAAAAATTCGAAACAAAGCTGCAGCCACCTATGATAAGTACAAAGTGTTTCTCCCTCAACAACAGTCCAGTTTCATCTAAATATCTGTGCATTTATACTATTTTTCAAATCCGATTTATATAATATCTTCATTTTTCCGATTACAATGACCTCATACTCTTGTCTTCCTCGTATTCATGTAAATCTAAGTCTCAAAAAATTAGACGCTAGTTTCTTTTTTGTTTATATATATACAATGCCCTCCTCAAATATTTCCCTGTGTCCTTTTAAAATGAATCTATTGCTATTTCAGTGGTTCTTTTTGTTTCTACCAAGAAAGCCCCTCTAGGTAATTGCACACACATAACCCCAGATACATGACATAAGCTCATGTAGAAAAAAAAGAAAAAAGAAGTATA</canonical>
            <polymorphic>ACCTGGTAGATGCTATCTACTCGCTGCTGAAGACGCCCGTCAACTCGTGTCCCCTAACTATTTGTAAGTTTGTTATGAATGTTTAAAGGTAACAGCAAGAAAAAAGAGAGAAAAGGAGTAGGGGCAGGAAATGATTATCTTTTTTCTTTTTTGTCGATGGATAATGTTTCGAATTAGAACTTGCTTCGCCGAGCAGCACTTCCTTCCAACAACGACGGATAATGCAAAAGAATTCAAGAAAAGAAAAAAGTTCAACGAAAAAAGAGAAAATTTCAAAAAACATCGCTGAAAAGTCATTGAAAAAAACGCAAAAATTCTGCGGTTTCCCACGAACTGTACACGAGGACAACAGTAGCGCGCATTTGCATACCGCCAAATTGACTGAAAATTGCTCGTAATTATAGTCTGAAATGCCAGCTTACACTGAATCAAAATATTTTATTTTAAACTGAAATAAATAGAACATATTTTGAACAATTAGTTTTCAAAGTCCCAAATTWCATGGAAAAGACAATCATCGTTTATAGACACTAAATTAAACAGATACTATTTCAGTCAAGACATCCTCAATGCATCATTCCTCATCTCTGAACCACTGCTTTCAAAAATTCGAAACAAAGCTGCAGCCACCTATGATAAGTACAAAGTGTTTCTCCCTCAACAACAGTCCAGTTTCATCTAAATATCTGTGCATTTATACTATTTTTCAAATCCGATTTATATAATATCTTCATTTTTCCGATTACAATGACCTCATACTCTTGTCTTCCTCGTATTCATGTAAATCTAAGTCTCAAAAAATTAGACGCTAGTTTCTTTTTTGTTTATATATATACAATGCCCTCCTCAAATATTTCCCTGTGTCCTTTTAAAATGAATCTATTGCTATTTCAGTGGTTCTTTTTGTTTCTACCAAGAAAGCCCCTCTAGGTAATTGCACACACATAACCCCAGATACATGACATAAGCTCATGTAGAAAAAAAAGAAAAAAGAAGTATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>394 230 183 111 44 38</canonical_bands>
                <polymorphic_bands>394 294 230 44 38</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCATGG</site>
                <isoschizomers>
                    <enzyme>Bsp19I</enzyme>
                    <enzyme>NcoI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAGCTTACACTGAATCAAAATA</pcr_primer_p1>
		<pcr_primer_p2>GAGGGAGAAACACTTTGTACTTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CCAGCTTACACTGAATCAAAATATTTTATTTTAAACTGAAATAAATAGAACATATTTTGAACAATTAGTTTTCAAAGTCCCAAATTCCATGGAAAAGACAATCATCGTTTATAGACACTAAATTAAACAGATACTATTTCAGTCAAGACATCCTCAATGCATCATTCCTCATCTCTGAACCACTGCTTTCAAAAATTCGAAACAAAGCTGCAGCCACCTATGATAAGTACAAAGTGTTTCTCCCTC</canonical_amplicon>
		<polymorphic_amplicon>CCAGCTTACACTGAATCAAAATATTTTATTTTAAACTGAAATAAATAGAACATATTTTGAACAATTAGTTTTCAAAGTCCCAAATTWCATGGAAAAGACAATCATCGTTTATAGACACTAAATTAAACAGATACTATTTCAGTCAAGACATCCTCAATGCATCATTCCTCATCTCTGAACCACTGCTTTCAAAAATTCGAAACAAAGCTGCAGCCACCTATGATAAGTACAAAGTGTTTCTCCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27281</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>221551</contig_pos>
        <strand>+</strand>
        <context>TAATTAGCAC[C/T]ATTATGSATT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCAC</left_flank>
        <right_flank>ATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAAGTTCCATTTTTAGAAGAAGAAGGATTCACGAGAGACCCATTATCGGTTCCTTTTGCCGAAACGAACCAGAGTCATCACTCGTTTTTGAGTCGGAATGAGTCCTGAAGACGAAGACGATGACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTC</canonical>
            <polymorphic>AGAAAGTTCCATTTTTAGAAGAAGAAGGATTCACGAGAGACCCATTATCGGTTCCTTTTGCCGAAACGAACCAGAGTCATCACTCGTTTTTGAGTCGGAATGAGTCCTGAAGACGAAGACGATGACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACYATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>408 138 134 130 72 34 33 18 10 9 8 6</canonical_bands>
                <polymorphic_bands>408 138 134 130 72 42 34 18 10 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGAGGCAACTAGAAAATGAT</pcr_primer_p1>
		<pcr_primer_p2>ATGAATGGCTGAAATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>CATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCAT</canonical_amplicon>
		<polymorphic_amplicon>CATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACYATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27282</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>221558</contig_pos>
        <strand>+</strand>
        <context>CACYATTATG[C/G]ATTTTTCATA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATG</left_flank>
        <right_flank>ATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCATTTTTAGAAGAAGAAGGATTCACGAGAGACCCATTATCGGTTCCTTTTGCCGAAACGAACCAGAGTCATCACTCGTTTTTGAGTCGGAATGAGTCCTGAAGACGAAGACGATGACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAA</canonical>
            <polymorphic>TCCATTTTTAGAAGAAGAAGGATTCACGAGAGACCCATTATCGGTTCCTTTTGCCGAAACGAACCAGAGTCATCACTCGTTTTTGAGTCGGAATGAGTCCTGAAGACGAAGACGATGACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGSATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGAGGCAACTAGAAAATGAT</pcr_primer_p1>
		<pcr_primer_p2>ATGAATGGCTGAAATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>CATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCAT</canonical_amplicon>
		<polymorphic_amplicon>CATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGSATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27283</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>221582</contig_pos>
        <strand>+</strand>
        <context>TCAAGACCAG[A/G]AAATTTGTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAG</left_flank>
        <right_flank>AAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACGAGAGACCCATTATCGGTTCCTTTTGCCGAAACGAACCAGAGTCATCACTCGTTTTTGAGTCGGAATGAGTCCTGAAGACGAAGACGATGACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGA</canonical>
            <polymorphic>CACGAGAGACCCATTATCGGTTCCTTTTGCCGAAACGAACCAGAGTCATCACTCGTTTTTGAGTCGGAATGAGTCCTGAAGACGAAGACGATGACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGRAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGAGGCAACTAGAAAATGAT</pcr_primer_p1>
		<pcr_primer_p2>ATGAATGGCTGAAATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>CATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCAT</canonical_amplicon>
		<polymorphic_amplicon>CATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGRAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27284</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>221593</contig_pos>
        <strand>+</strand>
        <context>AAATTTGTCA[A/C]TMMYKMSACT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCA</left_flank>
        <right_flank>TAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTATCGGTTCCTTTTGCCGAAACGAACCAGAGTCATCACTCGTTTTTGAGTCGGAATGAGTCCTGAAGACGAAGACGATGACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGAAGAAAGACGGA</canonical>
            <polymorphic>CATTATCGGTTCCTTTTGCCGAAACGAACCAGAGTCATCACTCGTTTTTGAGTCGGAATGAGTCCTGAAGACGAAGACGATGACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCAMTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGAAGAAAGACGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>150 142 107 104 95 59 56 56 53 43 43 40 37 10 5</canonical_bands>
                <polymorphic_bands>150 142 138 107 104 59 56 56 53 43 40 37 10 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>397 390 108 105</canonical_bands>
                <polymorphic_bands>502 390 108</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>495 397 108</canonical_bands>
                <polymorphic_bands>892 108</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGAGGCAACTAGAAAATGAT</pcr_primer_p1>
		<pcr_primer_p2>ATGAATGGCTGAAATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>CATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCAT</canonical_amplicon>
		<polymorphic_amplicon>CATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCAMTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27285</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>221595</contig_pos>
        <strand>+</strand>
        <context>ATTTGTCAMT[A/C]MYKMSACTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACT</left_flank>
        <right_flank>ATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATCGGTTCCTTTTGCCGAAACGAACCAGAGTCATCACTCGTTTTTGAGTCGGAATGAGTCCTGAAGACGAAGACGATGACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGAAGAAAGACGGAAA</canonical>
            <polymorphic>TTATCGGTTCCTTTTGCCGAAACGAACCAGAGTCATCACTCGTTTTTGAGTCGGAATGAGTCCTGAAGACGAAGACGATGACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTMATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGAAGAAAGACGGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGAGGCAACTAGAAAATGAT</pcr_primer_p1>
		<pcr_primer_p2>ATGAATGGCTGAAATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>CATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCAT</canonical_amplicon>
		<polymorphic_amplicon>CATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTMATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27286</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>221596</contig_pos>
        <strand>+</strand>
        <context>TTTGTCAMTM[A/C]YKMSACTCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTA</left_flank>
        <right_flank>TGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCGGTTCCTTTTGCCGAAACGAACCAGAGTCATCACTCGTTTTTGAGTCGGAATGAGTCCTGAAGACGAAGACGATGACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGAAGAAAGACGGAAAA</canonical>
            <polymorphic>TATCGGTTCCTTTTGCCGAAACGAACCAGAGTCATCACTCGTTTTTGAGTCGGAATGAGTCCTGAAGACGAAGACGATGACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAMTGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGAAGAAAGACGGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGAGGCAACTAGAAAATGAT</pcr_primer_p1>
		<pcr_primer_p2>ATGAATGGCTGAAATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>CATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCAT</canonical_amplicon>
		<polymorphic_amplicon>CATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAMTGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27287</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>221597</contig_pos>
        <strand>+</strand>
        <context>TTGTCAMTMM[C/T]KMSACTCTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAA</left_flank>
        <right_flank>GAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGGTTCCTTTTGCCGAAACGAACCAGAGTCATCACTCGTTTTTGAGTCGGAATGAGTCCTGAAGACGAAGACGATGACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGAAGAAAGACGGAAAAG</canonical>
            <polymorphic>ATCGGTTCCTTTTGCCGAAACGAACCAGAGTCATCACTCGTTTTTGAGTCGGAATGAGTCCTGAAGACGAAGACGATGACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAAYGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGAAGAAAGACGGAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGAGGCAACTAGAAAATGAT</pcr_primer_p1>
		<pcr_primer_p2>ATGAATGGCTGAAATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>CATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCAT</canonical_amplicon>
		<polymorphic_amplicon>CATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAAYGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27288</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>221598</contig_pos>
        <strand>+</strand>
        <context>TGTCAMTMMY[G/T]MSACTCTAAY</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAAT</left_flank>
        <right_flank>AGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGTTCCTTTTGCCGAAACGAACCAGAGTCATCACTCGTTTTTGAGTCGGAATGAGTCCTGAAGACGAAGACGATGACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGAAGAAAGACGGAAAAGT</canonical>
            <polymorphic>TCGGTTCCTTTTGCCGAAACGAACCAGAGTCATCACTCGTTTTTGAGTCGGAATGAGTCCTGAAGACGAAGACGATGACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATKAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGAAGAAAGACGGAAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGAGGCAACTAGAAAATGAT</pcr_primer_p1>
		<pcr_primer_p2>ATGAATGGCTGAAATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>CATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCAT</canonical_amplicon>
		<polymorphic_amplicon>CATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATKAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27289</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>221599</contig_pos>
        <strand>+</strand>
        <context>GTCAMTMMYK[A/C]SACTCTAAYG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATG</left_flank>
        <right_flank>GACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGTTCCTTTTGCCGAAACGAACCAGAGTCATCACTCGTTTTTGAGTCGGAATGAGTCCTGAAGACGAAGACGATGACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGAAGAAAGACGGAAAAGTA</canonical>
            <polymorphic>CGGTTCCTTTTGCCGAAACGAACCAGAGTCATCACTCGTTTTTGAGTCGGAATGAGTCCTGAAGACGAAGACGATGACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGMGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGAAGAAAGACGGAAAAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGAGGCAACTAGAAAATGAT</pcr_primer_p1>
		<pcr_primer_p2>ATGAATGGCTGAAATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>CATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCAT</canonical_amplicon>
		<polymorphic_amplicon>CATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGMGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27290</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>221600</contig_pos>
        <strand>+</strand>
        <context>TCAMTMMYKM[C/G]ACTCTAAYGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGA</left_flank>
        <right_flank>ACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTCCTTTTGCCGAAACGAACCAGAGTCATCACTCGTTTTTGAGTCGGAATGAGTCCTGAAGACGAAGACGATGACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGAAGAAAGACGGAAAAGTAT</canonical>
            <polymorphic>GGTTCCTTTTGCCGAAACGAACCAGAGTCATCACTCGTTTTTGAGTCGGAATGAGTCCTGAAGACGAAGACGATGACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGASACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGAAGAAAGACGGAAAAGTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>500 344 103 25 18 10</canonical_bands>
                <polymorphic_bands>844 103 25 18 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGAGGCAACTAGAAAATGAT</pcr_primer_p1>
		<pcr_primer_p2>ATGAATGGCTGAAATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>CATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCAT</canonical_amplicon>
		<polymorphic_amplicon>CATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGASACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27291</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>221608</contig_pos>
        <strand>+</strand>
        <context>KMSACTCTAA[C/T]GAGATTGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAA</left_flank>
        <right_flank>GAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCCGAAACGAACCAGAGTCATCACTCGTTTTTGAGTCGGAATGAGTCCTGAAGACGAAGACGATGACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGAAGAAAGACGGAAAAGTATTCCGTTTC</canonical>
            <polymorphic>TTGCCGAAACGAACCAGAGTCATCACTCGTTTTTGAGTCGGAATGAGTCCTGAAGACGAAGACGATGACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAAYGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGAAGAAAGACGGAAAAGTATTCCGTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGAGGCAACTAGAAAATGAT</pcr_primer_p1>
		<pcr_primer_p2>ATGAATGGCTGAAATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>CATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCAT</canonical_amplicon>
		<polymorphic_amplicon>CATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAAYGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27292</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>221624</contig_pos>
        <strand>+</strand>
        <context>TGAAAATTAG[A/G]AAATTACWAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAG</left_flank>
        <right_flank>AAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTCATCACTCGTTTTTGAGTCGGAATGAGTCCTGAAGACGAAGACGATGACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGAAGAAAGACGGAAAAGTATTCCGTTTCCAGTTGGCGGGTGTCT</canonical>
            <polymorphic>GAGTCATCACTCGTTTTTGAGTCGGAATGAGTCCTGAAGACGAAGACGATGACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGRAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGAAGAAAGACGGAAAAGTATTCCGTTTCCAGTTGGCGGGTGTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCATACATTCAAGACCAG</pcr_primer_p1>
		<pcr_primer_p2>TACACATGCTTGTGGATGAA</pcr_primer_p2>
		<pcr_amplicon_size>283</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGRAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27293</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>221632</contig_pos>
        <strand>+</strand>
        <context>AGRAAATTAC[A/T]AGGAAATAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTAC</left_flank>
        <right_flank>AGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCGTTTTTGAGTCGGAATGAGTCCTGAAGACGAAGACGATGACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGAAGAAAGACGGAAAAGTATTCCGTTTCCAGTTGGCGGGTGTCTTCTTGTTG</canonical>
            <polymorphic>ACTCGTTTTTGAGTCGGAATGAGTCCTGAAGACGAAGACGATGACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACWAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGAAGAAAGACGGAAAAGTATTCCGTTTCCAGTTGGCGGGTGTCTTCTTGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>359 258 196 124 30 17 16</canonical_bands>
                <polymorphic_bands>359 258 196 141 30 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCATACATTCAAGACCAG</pcr_primer_p1>
		<pcr_primer_p2>TACACATGCTTGTGGATGAA</pcr_primer_p2>
		<pcr_amplicon_size>283</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACWAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27294</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>221655</contig_pos>
        <strand>+</strand>
        <context>ATTCTAGAAA[A/C]CGGRACTTYA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAA</left_flank>
        <right_flank>CGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTGAAGACGAAGACGATGACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGAAGAAAGACGGAAAAGTATTCCGTTTCCAGTTGGCGGGTGTCTTCTTGTTGCAAATGAATGACGTTGGTTCAGT</canonical>
            <polymorphic>TCCTGAAGACGAAGACGATGACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAMCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGAAGAAAGACGGAAAAGTATTCCGTTTCCAGTTGGCGGGTGTCTTCTTGTTGCAAATGAATGACGTTGGTTCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCATACATTCAAGACCAG</pcr_primer_p1>
		<pcr_primer_p2>TACACATGCTTGTGGATGAA</pcr_primer_p2>
		<pcr_amplicon_size>283</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAMCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27295</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>221659</contig_pos>
        <strand>+</strand>
        <context>TAGAAAMCGG[A/G]ACTTYAGCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGG</left_flank>
        <right_flank>ACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGACGAAGACGATGACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGAAGAAAGACGGAAAAGTATTCCGTTTCCAGTTGGCGGGTGTCTTCTTGTTGCAAATGAATGACGTTGGTTCAGTTTCT</canonical>
            <polymorphic>GAAGACGAAGACGATGACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGRACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGAAGAAAGACGGAAAAGTATTCCGTTTCCAGTTGGCGGGTGTCTTCTTGTTGCAAATGAATGACGTTGGTTCAGTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCATACATTCAAGACCAG</pcr_primer_p1>
		<pcr_primer_p2>TACACATGCTTGTGGATGAA</pcr_primer_p2>
		<pcr_amplicon_size>283</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGRACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27296</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>221664</contig_pos>
        <strand>+</strand>
        <context>AMCGGRACTT[C/T]AGCAAATGAW</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTT</left_flank>
        <right_flank>AGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAAGACGATGACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGAAGAAAGACGGAAAAGTATTCCGTTTCCAGTTGGCGGGTGTCTTCTTGTTGCAAATGAATGACGTTGGTTCAGTTTCTCGTTT</canonical>
            <polymorphic>CGAAGACGATGACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTYAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGAAGAAAGACGGAAAAGTATTCCGTTTCCAGTTGGCGGGTGTCTTCTTGTTGCAAATGAATGACGTTGGTTCAGTTTCTCGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCATACATTCAAGACCAG</pcr_primer_p1>
		<pcr_primer_p2>TACACATGCTTGTGGATGAA</pcr_primer_p2>
		<pcr_amplicon_size>283</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTYAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27297</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>221674</contig_pos>
        <strand>+</strand>
        <context>YAGCAAATGA[A/T]CTTCTAGRYA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGA</left_flank>
        <right_flank>CTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGAAGAAAGACGGAAAAGTATTCCGTTTCCAGTTGGCGGGTGTCTTCTTGTTGCAAATGAATGACGTTGGTTCAGTTTCTCGTTTCCAGGTCAAA</canonical>
            <polymorphic>GACCATCTTTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGAWCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGAAGAAAGACGGAAAAGTATTCCGTTTCCAGTTGGCGGGTGTCTTCTTGTTGCAAATGAATGACGTTGGTTCAGTTTCTCGTTTCCAGGTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>503 296 156 45</canonical_bands>
                <polymorphic_bands>659 296 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCATACATTCAAGACCAG</pcr_primer_p1>
		<pcr_primer_p2>TACACATGCTTGTGGATGAA</pcr_primer_p2>
		<pcr_amplicon_size>283</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGAWCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27298</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>221682</contig_pos>
        <strand>+</strand>
        <context>GAWCTTCTAG[A/G]YAGTGAGTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAG</left_flank>
        <right_flank>AAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGAAGAAAGACGGAAAAGTATTCCGTTTCCAGTTGGCGGGTGTCTTCTTGTTGCAAATGAATGACGTTGGTTCAGTTTCTCGTTTCCAGGTCAAATTTTGGTT</canonical>
            <polymorphic>TTTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGRAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGAAGAAAGACGGAAAAGTATTCCGTTTCCAGTTGGCGGGTGTCTTCTTGTTGCAAATGAATGACGTTGGTTCAGTTTCTCGTTTCCAGGTCAAATTTTGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCATACATTCAAGACCAG</pcr_primer_p1>
		<pcr_primer_p2>TACACATGCTTGTGGATGAA</pcr_primer_p2>
		<pcr_amplicon_size>283</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGRAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27299</snp_id>
        <super_contig>c003000943.Contig3</super_contig>
        <contig_pos>221683</contig_pos>
        <strand>+</strand>
        <context>AWCTTCTAGR[C/T]AGTGAGTATT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGC</left_flank>
        <right_flank>AGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGAAGAAAGACGGAAAAGTATTCCGTTTCCAGTTGGCGGGTGTCTTCTTGTTGCAAATGAATGACGTTGGTTCAGTTTCTCGTTTCCAGGTCAAATTTTGGTTT</canonical>
            <polymorphic>TTTGTGTTCCCTTTTTCGAAAATAAATGCCATGGGAGAAGGAAAGAGCGAGAAGAGAGAGTGAAACACCCAAGAATCAAGCTAATCTCGCTAAGAACTCGGTCCATCGTGAAACATAGTTCAATGTTTCCATTCCGCCCCCTTAGCACAAGAGGGGAGAGACTNGANAGGGCNCCNTNTCGGACGGACATGACGATGTAAAACGCACGTTAAACGGACGAAAAATGGGCGAAAAGCTGACGAAAAGCAGATAAAAAGCAGATGAAAAGCTGACGAAAATTAAACAACGATCTGAAAATGGGTAACTTCTAGCACATGAGGCAACTAGAAAATGATCTTCTATTTTACGAATTTATATTAATTAGCACAATTATGGATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCYAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTACATCATTTAGAAAAAGAGCCTTCCGGAAACTTCTAGAATACCTTATTTATGTTTGGATTACGTTTGAATTTTTCAACGAAACTTTTCTGCAAAACTCGCTCTCCGAACTCCCAGAGAAAGATAAACCAAACATTTTTTGACTTCGTCACTTTTAACTCTTCCTTCTTCGTCTTCTTCCGTCCAGAGACTATTTTATGACCTTGGAATTTCAAAGAAAAGAGCAAAACGCTAAAACAGAAGAAGAAAGACGGAAAAGTATTCCGTTTCCAGTTGGCGGGTGTCTTCTTGTTGCAAATGAATGACGTTGGTTCAGTTTCTCGTTTCCAGGTCAAATTTTGGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCATACATTCAAGACCAG</pcr_primer_p1>
		<pcr_primer_p2>TACACATGCTTGTGGATGAA</pcr_primer_p2>
		<pcr_amplicon_size>283</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCAAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCATACATTCAAGACCAGAAAATTTGTCACTAATGAGACTCTAACGAGATTGAAAATTAGAAAATTACTAGGAAATAGACAATTCTAGAAAGCGGGACTTTAGCAAATGATCTTCTAGCYAGTGAGTATTTTCTCATCGAAGGCGCATGTATTTATTAAAAAAAAACAGTAGCTGTTTTCGCTGCTCAACCGACGATGCGCCTTTTAATAAATTTACGGCCGCAGACAAGAATACCATTCATTTTTTGATTTCAGCCATTCATCCACAAGCATGTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27301</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>12924</contig_pos>
        <strand>+</strand>
        <context>ACTCAAAAAC[G/T]TTTCAATTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTAGCTCCATTAGGATGTTCGTCATTGTGATCGCCTAAAAACTCAAAAAC</left_flank>
        <right_flank>TTTCAATTGTCATTCAAACTTTGGCTCACTTTCTATGCAATATCCTGGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATTGTGTTGTCTAAATTTGGGATGAGGGTCAACGAAGATACCAAACTTTGGAATCGTTCAATAAATAGAATTGGATTGTAGGAGCTCAGAAGAACATGTGATTCTGGAAAATGAGTCATTACCGATGAATCCTCATAAGAAATAACCTTTGGAGTCGTGGACTATCAGTGTGAATTCTTTTTTGTATGACGTCTCCGTGGTAACATTGGTCAAATACAGAATTTGGCTGATTTCCATTGCCAGAGTCATATATATCTGTTCGTTGGCAGAATGTTGCTCCAAAATGAAAATATACTGAAAATTTAAAAAAAGTTCCAGATAGAATTCGCTTTTCATACTTGTCTAGCTTCCTCAAGTCGTGGATCGTTGATTGCTTCAATGTTTCTCTGATTACATTGAATGGTGTCGTTTTGAGAAGCTTTCATGTGTTCTTCATGGCTATTCCAGGTAGCTCCATTAGGATGTTCGTCATTGTGATCGCCTAAAAACTCAAAAACTTTTCAATTGTCATTCAAACTTTGGCTCACTTTCTATGCAATATCCTGGAGTAACTCGTTGTTGATTAAACCCGTTATAGTAGAAAGTGTGTAGTTGTCTGAAAACTGCAAGATAACTCTTCCAATTTTCTCTAAAAACCCCTACGTGATAGGTCCTGCTGGGCATTCTAAAGTTGGCCATGCTGGGAACCCGTATGTAAAAGTGCAGTCTTTCTGGGATCTTTCAGATGCGTAGTATTTTTCTCTTAATAGTTCTCCCTCTGATGACCGGACGTCGTAGCTGGTATTCAACCACTGTGTGAATCCGTAGGTTTCCATTGTGGAAAACATGTCGATTCCTAGAATCAAACATTTCCAAATTTATTCTTGGGGATATTTAATGAGATCGTCGGTGACTATAAAAAATGGTTCCCTGAGGTTCAAATATTTTCGAAACTGATTTCACCCTACCTATGACTGCCATCCCGTTTCCAACATCAATGACCATGTCATCGTTGTAAT</canonical>
            <polymorphic>CCATTGTGTTGTCTAAATTTGGGATGAGGGTCAACGAAGATACCAAACTTTGGAATCGTTCAATAAATAGAATTGGATTGTAGGAGCTCAGAAGAACATGTGATTCTGGAAAATGAGTCATTACCGATGAATCCTCATAAGAAATAACCTTTGGAGTCGTGGACTATCAGTGTGAATTCTTTTTTGTATGACGTCTCCGTGGTAACATTGGTCAAATACAGAATTTGGCTGATTTCCATTGCCAGAGTCATATATATCTGTTCGTTGGCAGAATGTTGCTCCAAAATGAAAATATACTGAAAATTTAAAAAAAGTTCCAGATAGAATTCGCTTTTCATACTTGTCTAGCTTCCTCAAGTCGTGGATCGTTGATTGCTTCAATGTTTCTCTGATTACATTGAATGGTGTCGTTTTGAGAAGCTTTCATGTGTTCTTCATGGCTATTCCAGGTAGCTCCATTAGGATGTTCGTCATTGTGATCGCCTAAAAACTCAAAAACKTTTCAATTGTCATTCAAACTTTGGCTCACTTTCTATGCAATATCCTGGAGTAACTCGTTGTTGATTAAACCCGTTATAGTAGAAAGTGTGTAGTTGTCTGAAAACTGCAAGATAACTCTTCCAATTTTCTCTAAAAACCCCTACGTGATAGGTCCTGCTGGGCATTCTAAAGTTGGCCATGCTGGGAACCCGTATGTAAAAGTGCAGTCTTTCTGGGATCTTTCAGATGCGTAGTATTTTTCTCTTAATAGTTCTCCCTCTGATGACCGGACGTCGTAGCTGGTATTCAACCACTGTGTGAATCCGTAGGTTTCCATTGTGGAAAACATGTCGATTCCTAGAATCAAACATTTCCAAATTTATTCTTGGGGATATTTAATGAGATCGTCGGTGACTATAAAAAATGGTTCCCTGAGGTTCAAATATTTTCGAAACTGATTTCACCCTACCTATGACTGCCATCCCGTTTCCAACATCAATGACCATGTCATCGTTGTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCATACTTGTCTAGCTTCCTC</pcr_primer_p1>
		<pcr_primer_p2>ACTATAACGGGTTTAATCAACAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTCATACTTGTCTAGCTTCCTCAAGTCGTGGATCGTTGATTGCTTCAATGTTTCTCTGATTACATTGAATGGTGTCGTTTTGAGAAGCTTTCATGTGTTCTTCATGGCTATTCCAGGTAGCTCCATTAGGATGTTCGTCATTGTGATCGCCTAAAAACTCAAAAACTTTTCAATTGTCATTCAAACTTTGGCTCACTTTCTATGCAATATCCTGGAGTAACTCGTTGTTGATTAAACCCGTTATAGT</canonical_amplicon>
		<polymorphic_amplicon>TTTCATACTTGTCTAGCTTCCTCAAGTCGTGGATCGTTGATTGCTTCAATGTTTCTCTGATTACATTGAATGGTGTCGTTTTGAGAAGCTTTCATGTGTTCTTCATGGCTATTCCAGGTAGCTCCATTAGGATGTTCGTCATTGTGATCGCCTAAAAACTCAAAAACKTTTCAATTGTCATTCAAACTTTGGCTCACTTTCTATGCAATATCCTGGAGTAACTCGTTGTTGATTAAACCCGTTATAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27302</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>13659</contig_pos>
        <strand></strand>
        <context>TACATTTTTT[C/T]AGATCAACTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTGATATTGAAGGCAGTTTTGAATCTGATAATCAAATTTACATTTTTT</left_flank>
        <right_flank>AGATCAACTATCACGCATACTTGTCAATGGATTCACTGTGAGCAGGAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTCTCTTAATAGTTCTCCCTCTGATGACCGGACGTCGTAGCTGGTATTCAACCACTGTGTGAATCCGTAGGTTTCCATTGTGGAAAACATGTCGATTCCTAGAATCAAACATTTCCAAATTTATTCTTGGGGATATTTAATGAGATCGTCGGTGACTATAAAAAATGGTTCCCTGAGGTTCAAATATTTTCGAAACTGATTTCACCCTACCTATGACTGCCATCCCGTTTCCAACATCAATGACCATGTCATCGTTGTAATTGAATAATATAGTATTCTTTGATTGAATGAACATTCTGTAGTTGTAGATTGATCCAGGTGTGGAAGAGATCGTGACTGTGTCTCCAAGTTTGCTGGATCTTGTGTAGAGCTAAACAACTGCATAAAAACTTGAAGAATATGTCGAACCTACTCTATACGATGGTCCTTCAACCAATAGTTTCGCATCTGATATTGAAGGCAGTTTTGAATCTGATAATCAAATTTACATTTTTTCAGATCAACTATCACGCATACTTGTCAATGGATTCACTGTGAGCAGGAAAAAAAAACGGAATCTCCATCGCTATCCACATAAGTCGTCACTGTTTCATCCCGAGTGAGTCCATATCCAACTGATACGTTTTCTGGGAAATATTGAGAACCAATAACAGAGAGAAGAACGTTGGAGAGGTCATTGGAATCTTGAATGTAGAAATTGTCGCCATGGTTGGTAAGGGCTAGTCGACGATAGACATCAACTCCATCTGATGAGAGGTCGACTCCTTTGGGTAATGACAAGAAGAAATAGTACTGAACGTTATTATCATATTTTTAAATCACCTTTTTCTTTTCCCTCACTTTGGATCTCCATAAAAGCGAGATCTGAAGAACATCTTGTTCTGCATTCTTATCTGTAAATCTATGTGACCAAGGGGTTGCATCTGAAGCTGGACTGTCTGTGAAAACCAAAACAATCGCATGAGATTTCATTTTCGGAAACTTTTATTGTGAATC</canonical>
            <polymorphic>ATTTTTCTCTTAATAGTTCTCCCTCTGATGACCGGACGTCGTAGCTGGTATTCAACCACTGTGTGAATCCGTAGGTTTCCATTGTGGAAAACATGTCGATTCCTAGAATCAAACATTTCCAAATTTATTCTTGGGGATATTTAATGAGATCGTCGGTGACTATAAAAAATGGTTCCCTGAGGTTCAAATATTTTCGAAACTGATTTCACCCTACCTATGACTGCCATCCCGTTTCCAACATCAATGACCATGTCATCGTTGTAATTGAATAATATAGTATTCTTTGATTGAATGAACATTCTGTAGTTGTAGATTGATCCAGGTGTGGAAGAGATCGTGACTGTGTCTCCAAGTTTGCTGGATCTTGTGTAGAGCTAAACAACTGCATAAAAACTTGAAGAATATGTCGAACCTACTCTATACGATGGTCCTTCAACCAATAGTTTCGCATCTGATATTGAAGGCAGTTTTGAATCTGATAATCAAATTTACATTTTTTYAGATCAACTATCACGCATACTTGTCAATGGATTCACTGTGAGCAGGAAAAAAAAACGGAATCTCCATCGCTATCCACATAAGTCGTCACTGTTTCATCCCGAGTGAGTCCATATCCAACTGATACGTTTTCTGGGAAATATTGAGAACCAATAACAGAGAGAAGAACGTTGGAGAGGTCATTGGAATCTTGAATGTAGAAATTGTCGCCATGGTTGGTAAGGGCTAGTCGACGATAGACATCAACTCCATCTGATGAGAGGTCGACTCCTTTGGGTAATGACAAGAAGAAATAGTACTGAACGTTATTATCATATTTTTAAATCACCTTTTTCTTTTCCCTCACTTTGGATCTCCATAAAAGCGAGATCTGAAGAACATCTTGTTCTGCATTCTTATCTGTAAATCTATGTGACCAAGGGGTTGCATCTGAAGCTGGACTGTCTGTGAAAACCAAAACAATCGCATGAGATTTCATTTTCGGAAACTTTTATTGTGAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>427 251 118 59 52 26 24 24 19</canonical_bands>
                <polymorphic_bands>427 275 118 59 52 26 24 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAACAACTGCATAAAAACTTGA</pcr_primer_p1>
		<pcr_primer_p2>GTATCAGTTGGATATGGACTCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAACAACTGCATAAAAACTTGAAGAATATGTCGAACCTACTCTATACGATGGTCCTTCAACCAATAGTTTCGCATCTGATATTGAAGGCAGTTTTGAATCTGATAATCAAATTTACATTTTTTCAGATCAACTATCACGCATACTTGTCAATGGATTCACTGTGAGCAGGAAAAAAAAACGGAATCTCCATCGCTATCCACATAAGTCGTCACTGTTTCATCCCGAGTGAGTCCATATCCAACTGATAC</canonical_amplicon>
		<polymorphic_amplicon>TAAACAACTGCATAAAAACTTGAAGAATATGTCGAACCTACTCTATACGATGGTCCTTCAACCAATAGTTTCGCATCTGATATTGAAGGCAGTTTTGAATCTGATAATCAAATTTACATTTTTTYAGATCAACTATCACGCATACTTGTCAATGGATTCACTGTGAGCAGGAAAAAAAAACGGAATCTCCATCGCTATCCACATAAGTCGTCACTGTTTCATCCCGAGTGAGTCCATATCCAACTGATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27303</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>18411</contig_pos>
        <strand>-</strand>
        <context>CTGGGCCATT[A/G]AGTGTSGGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGCAGCAATGTCCATCTCCGAAGCTGCTCGCGGAGAGGCTGGGCCATT</left_flank>
        <right_flank>AGTGTCGGATTGAAGCAAGAGTTTGATAAGCCAGTCAGAGATGACAATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAAAACTTTTATAACTTTTGAAATGGGAAGATCCGGGTGTTACTATCAGCAAAAAACATTTTGAATCCGTTAAAAACAAAGTGAAGAAAAGGTCGAAAATTATGTGAAGACTGACTAGGGAACTATCTGAGCGGGATTCCAAGTTACACTTAATGACCTATATCATGAGAAAACCCATAAAATTCTCATTCGTAATATGTATTCTGTTCGCGCGAAGCGGATGAGAATCTCCAAGATCTGGGGCCCCTCCCAGACTACATTGACCATATCCCAGCTCCTCAACCAATACACATGGGAGAAATGGAATCCAACTTGGAGAAACTCGAAGAAGACCTTCTTCAAATCAACAAGAACACCAGAACTCTCCAGACCAACCATATTCAATTGCTTGAGATGAAAGCTGGCTTGAAGCATGTTACGTTTTTGATGGACCATCAGAGCAAGAGCGAAGCAGCAATGTCCATCTCCGAAGCTGCTCGCGGAGAGGCTGGGCCATTTAGTGTCGGATTGAAGCAAGAGTTTGATAAGCCAGTCAGAGATGACAATGAGCTTAAGTAAGTCTTGTCAGTTTTGAAATCGCTAGCCCCCCCCCAATTTAGATTCGTCACCGGAGTCATCAAACGTGCCAAGAGTATTGCCTTTGCGCGTTTCCTCCGCCCGCCGGCGTATATAATTGGGTGCCCTGTGGGGACACTCTCTAGCGCATTGAAACTTCAGAACTCTGTATCGCAGCTCTTAGGAGACGTAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTCACCGCCGTTTCGCAAAAAAAGAAAACTAATTCCGAATCAGAATTTTATGGGCTTTCTAATGATATAGGTCATGAATTGTAACTTGAATTCCC</canonical>
            <polymorphic>GATAAAACTTTTATAACTTTTGAAATGGGAAGATCCGGGTGTTACTATCAGCAAAAAACATTTTGAATCCGTTAAAAACAAAGTGAAGAAAAGGTCGAAAATTATGTGAAGACTGACTAGGGAACTATCTGAGCGGGATTCCAAGTTACACTTAATGACCTATATCATGAGAAAACCCATAAAATTCTCATTCGTAATATGTATTCTGTTCGCGCGAAGCGGATGAGAATCTCCAAGATCTGGGGCCCCTCCCAGACTACATTGACCATATCCCAGCTCCTCAACCAATACACATGGGAGAAATGGAATCCAACTTGGAGAAACTCGAAGAAGACCTTCTTCAAATCAACAAGAACACCAGAACTCTCCAGACCAACCATATTCAATTGCTTGAGATGAAAGCTGGCTTGAAGCATGTTACGTTTTTGATGGACCATCAGAGCAAGAGCGAAGCAGCAATGTCCATCTCCGAAGCTGCTCGCGGAGAGGCTGGGCCATTRAGTGTCGGATTGAAGCAAGAGTTTGATAAGCCAGTCAGAGATGACAATGAGCTTAAGTAAGTCTTGTCAGTTTTGAAATCGCTAGCCCCCCCCCAATTTAGATTCGTCACCGGAGTCATCAAACGTGCCAAGAGTATTGCCTTTGCGCGTTTCCTCCGCCCGCCGGCGTATATAATTGGGTGCCCTGTGGGGACACTCTCTAGCGCATTGAAACTTCAGAACTCTGTATCGCAGCTCTTAGGAGACGTAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTCACCGCCGTTTCGCAAAAAAAGAAAACTAATTCCGAATCAGAATTTTATGGGCTTTCTAATGATATAGGTCATGAATTGTAACTTGAATTCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTTCAAATCAACAAGAACAC</pcr_primer_p1>
		<pcr_primer_p2>CTAGCGATTTCAAAACTGACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCTTCAAATCAACAAGAACACCAGAACTCTCCAGACCAACCATATTCAATTGCTTGAGATGAAAGCTGGCTTGAAGCATGTTACGTTTTTGATGGACCATCAGAGCAAGAGCGAAGCAGCAATGTCCATCTCCGAAGCTGCTCGCGGAGAGGCTGGGCCATTTAGTGTCGGATTGAAGCAAGAGTTTGATAAGCCAGTCAGAGATGACAATGAGCTTAAGTAAGTCTTGTCAGTTTTGAAATCGCTAG</canonical_amplicon>
		<polymorphic_amplicon>CTTCTTCAAATCAACAAGAACACCAGAACTCTCCAGACCAACCATATTCAATTGCTTGAGATGAAAGCTGGCTTGAAGCATGTTACGTTTTTGATGGACCATCAGAGCAAGAGCGAAGCAGCAATGTCCATCTCCGAAGCTGCTCGCGGAGAGGCTGGGCCATTRAGTGTCGGATTGAAGCAAGAGTTTGATAAGCCAGTCAGAGATGACAATGAGCTTAAGTAAGTCTTGTCAGTTTTGAAATCGCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27304</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>18417</contig_pos>
        <strand>-</strand>
        <context>CATTRAGTGT[C/G]GGATTGAAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCAATGTCCATCTCCGAAGCTGCTCGCGGAGAGGCTGGGCCATTTAGTGT</left_flank>
        <right_flank>GGATTGAAGCAAGAGTTTGATAAGCCAGTCAGAGATGACAATGAGCTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTTTATAACTTTTGAAATGGGAAGATCCGGGTGTTACTATCAGCAAAAAACATTTTGAATCCGTTAAAAACAAAGTGAAGAAAAGGTCGAAAATTATGTGAAGACTGACTAGGGAACTATCTGAGCGGGATTCCAAGTTACACTTAATGACCTATATCATGAGAAAACCCATAAAATTCTCATTCGTAATATGTATTCTGTTCGCGCGAAGCGGATGAGAATCTCCAAGATCTGGGGCCCCTCCCAGACTACATTGACCATATCCCAGCTCCTCAACCAATACACATGGGAGAAATGGAATCCAACTTGGAGAAACTCGAAGAAGACCTTCTTCAAATCAACAAGAACACCAGAACTCTCCAGACCAACCATATTCAATTGCTTGAGATGAAAGCTGGCTTGAAGCATGTTACGTTTTTGATGGACCATCAGAGCAAGAGCGAAGCAGCAATGTCCATCTCCGAAGCTGCTCGCGGAGAGGCTGGGCCATTTAGTGTCGGATTGAAGCAAGAGTTTGATAAGCCAGTCAGAGATGACAATGAGCTTAAGTAAGTCTTGTCAGTTTTGAAATCGCTAGCCCCCCCCCAATTTAGATTCGTCACCGGAGTCATCAAACGTGCCAAGAGTATTGCCTTTGCGCGTTTCCTCCGCCCGCCGGCGTATATAATTGGGTGCCCTGTGGGGACACTCTCTAGCGCATTGAAACTTCAGAACTCTGTATCGCAGCTCTTAGGAGACGTAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTCACCGCCGTTTCGCAAAAAAAGAAAACTAATTCCGAATCAGAATTTTATGGGCTTTCTAATGATATAGGTCATGAATTGTAACTTGAATTCCCGCTCAG</canonical>
            <polymorphic>ACTTTTATAACTTTTGAAATGGGAAGATCCGGGTGTTACTATCAGCAAAAAACATTTTGAATCCGTTAAAAACAAAGTGAAGAAAAGGTCGAAAATTATGTGAAGACTGACTAGGGAACTATCTGAGCGGGATTCCAAGTTACACTTAATGACCTATATCATGAGAAAACCCATAAAATTCTCATTCGTAATATGTATTCTGTTCGCGCGAAGCGGATGAGAATCTCCAAGATCTGGGGCCCCTCCCAGACTACATTGACCATATCCCAGCTCCTCAACCAATACACATGGGAGAAATGGAATCCAACTTGGAGAAACTCGAAGAAGACCTTCTTCAAATCAACAAGAACACCAGAACTCTCCAGACCAACCATATTCAATTGCTTGAGATGAAAGCTGGCTTGAAGCATGTTACGTTTTTGATGGACCATCAGAGCAAGAGCGAAGCAGCAATGTCCATCTCCGAAGCTGCTCGCGGAGAGGCTGGGCCATTTAGTGTSGGATTGAAGCAAGAGTTTGATAAGCCAGTCAGAGATGACAATGAGCTTAAGTAAGTCTTGTCAGTTTTGAAATCGCTAGCCCCCCCCCAATTTAGATTCGTCACCGGAGTCATCAAACGTGCCAAGAGTATTGCCTTTGCGCGTTTCCTCCGCCCGCCGGCGTATATAATTGGGTGCCCTGTGGGGACACTCTCTAGCGCATTGAAACTTCAGAACTCTGTATCGCAGCTCTTAGGAGACGTAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTCACCGCCGTTTCGCAAAAAAAGAAAACTAATTCCGAATCAGAATTTTATGGGCTTTCTAATGATATAGGTCATGAATTGTAACTTGAATTCCCGCTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>309 223 181 124 59 37 31 30 6</canonical_bands>
                <polymorphic_bands>309 223 181 124 67 59 31 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCTTCAAATCAACAAGAACAC</pcr_primer_p1>
		<pcr_primer_p2>CTAGCGATTTCAAAACTGACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCTTCAAATCAACAAGAACACCAGAACTCTCCAGACCAACCATATTCAATTGCTTGAGATGAAAGCTGGCTTGAAGCATGTTACGTTTTTGATGGACCATCAGAGCAAGAGCGAAGCAGCAATGTCCATCTCCGAAGCTGCTCGCGGAGAGGCTGGGCCATTTAGTGTCGGATTGAAGCAAGAGTTTGATAAGCCAGTCAGAGATGACAATGAGCTTAAGTAAGTCTTGTCAGTTTTGAAATCGCTAG</canonical_amplicon>
		<polymorphic_amplicon>CTTCTTCAAATCAACAAGAACACCAGAACTCTCCAGACCAACCATATTCAATTGCTTGAGATGAAAGCTGGCTTGAAGCATGTTACGTTTTTGATGGACCATCAGAGCAAGAGCGAAGCAGCAATGTCCATCTCCGAAGCTGCTCGCGGAGAGGCTGGGCCATTTAGTGTSGGATTGAAGCAAGAGTTTGATAAGCCAGTCAGAGATGACAATGAGCTTAAGTAAGTCTTGTCAGTTTTGAAATCGCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27305</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21451</contig_pos>
        <strand></strand>
        <context>CGGAGAAGAA[G/A]AGAATGAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAA</left_flank>
        <right_flank>AGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTT</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCTCTGTAACTGGCGATTCCGTAAGCATCAACAATATTTTGGAATCCTTGAGTGAATTTGTTGAGTTTGAAGTAGGTTGGTGGATATTTCTCAGTTTCCATTTCATTGAGAATAGCTGGAACTGAAGATCCAGAGTGGATGGTTCCCATGTGGAGAGAGTTCTTCACTTGAGCAATATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGT</canonical>
            <polymorphic>CTTCTCTGTAACTGGCGATTCCGTAAGCATCAACAATATTTTGGAATCCTTGAGTGAATTTGTTGAGTTTGAAGTAGGTTGGTGGATATTTCTCAGTTTCCATTTCATTGAGAATAGCTGGAACTGAAGATCCAGAGTGGATGGTTCCCATGTGGAGAGAGTTCTTCACTTGAGCAATATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAARAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAATACACTTTGCACGATAAT</pcr_primer_p1>
		<pcr_primer_p2>TTGTTCAAATCCAAGAGAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAA</canonical_amplicon>
		<polymorphic_amplicon>ATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAARAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27306</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21487</contig_pos>
        <strand>+</strand>
        <context>ATTCATGAGA[A/G]AASARGTCRG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGA</left_flank>
        <right_flank>AAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGC</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTTGGAATCCTTGAGTGAATTTGTTGAGTTTGAAGTAGGTTGGTGGATATTTCTCAGTTTCCATTTCATTGAGAATAGCTGGAACTGAAGATCCAGAGTGGATGGTTCCCATGTGGAGAGAGTTCTTCACTTGAGCAATATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCAT</canonical>
            <polymorphic>TATTTTGGAATCCTTGAGTGAATTTGTTGAGTTTGAAGTAGGTTGGTGGATATTTCTCAGTTTCCATTTCATTGAGAATAGCTGGAACTGAAGATCCAGAGTGGATGGTTCCCATGTGGAGAGAGTTCTTCACTTGAGCAATATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGARAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATAACAGCTTTCATATCATTG</pcr_primer_p1>
		<pcr_primer_p2>AGACTCTCCCGTGCTAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCT</canonical_amplicon>
		<polymorphic_amplicon>CAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGARAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27307</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21490</contig_pos>
        <strand>+</strand>
        <context>CATGAGARAA[C/G]ARGTCRGTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAA</left_flank>
        <right_flank>AGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGAATCCTTGAGTGAATTTGTTGAGTTTGAAGTAGGTTGGTGGATATTTCTCAGTTTCCATTTCATTGAGAATAGCTGGAACTGAAGATCCAGAGTGGATGGTTCCCATGTGGAGAGAGTTCTTCACTTGAGCAATATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCT</canonical>
            <polymorphic>TTTGGAATCCTTGAGTGAATTTGTTGAGTTTGAAGTAGGTTGGTGGATATTTCTCAGTTTCCATTTCATTGAGAATAGCTGGAACTGAAGATCCAGAGTGGATGGTTCCCATGTGGAGAGAGTTCTTCACTTGAGCAATATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAASAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATAACAGCTTTCATATCATTG</pcr_primer_p1>
		<pcr_primer_p2>AGACTCTCCCGTGCTAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCT</canonical_amplicon>
		<polymorphic_amplicon>CAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAASAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27308</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21496</contig_pos>
        <strand>+</strand>
        <context>ARAASARGTC[A/G]GTTTTCTCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTC</left_flank>
        <right_flank>GTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCTTGAGTGAATTTGTTGAGTTTGAAGTAGGTTGGTGGATATTTCTCAGTTTCCATTTCATTGAGAATAGCTGGAACTGAAGATCCAGAGTGGATGGTTCCCATGTGGAGAGAGTTCTTCACTTGAGCAATATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGA</canonical>
            <polymorphic>ATCCTTGAGTGAATTTGTTGAGTTTGAAGTAGGTTGGTGGATATTTCTCAGTTTCCATTTCATTGAGAATAGCTGGAACTGAAGATCCAGAGTGGATGGTTCCCATGTGGAGAGAGTTCTTCACTTGAGCAATATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCRGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATAACAGCTTTCATATCATTG</pcr_primer_p1>
		<pcr_primer_p2>AGACTCTCCCGTGCTAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCT</canonical_amplicon>
		<polymorphic_amplicon>CAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCRGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27309</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21529</contig_pos>
        <strand>+</strand>
        <context>ACTTRGCGAA[C/G]ACTTTAGCAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAA</left_flank>
        <right_flank>ACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGTGGATATTTCTCAGTTTCCATTTCATTGAGAATAGCTGGAACTGAAGATCCAGAGTGGATGGTTCCCATGTGGAGAGAGTTCTTCACTTGAGCAATATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTA</canonical>
            <polymorphic>TTGGTGGATATTTCTCAGTTTCCATTTCATTGAGAATAGCTGGAACTGAAGATCCAGAGTGGATGGTTCCCATGTGGAGAGAGTTCTTCACTTGAGCAATATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAASACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>147 124 106 102 98 65 63 56 55 47 45 19 18 15 14 8 7 6 5</canonical_bands>
                <polymorphic_bands>147 132 106 102 98 65 63 56 55 47 45 19 18 15 14 7 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAACGCATTTGTCTTCATA</pcr_primer_p1>
		<pcr_primer_p2>GATTGAAGCAAGAGTTTGATAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATC</canonical_amplicon>
		<polymorphic_amplicon>GAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAASACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27310</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21607</contig_pos>
        <strand>+</strand>
        <context>CGGTGACRAA[C/T]CTRAATTTYK</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAA</left_flank>
        <right_flank>CTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAGTTCTTCACTTGAGCAATATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGA</canonical>
            <polymorphic>GAGAGTTCTTCACTTGAGCAATATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAAYCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>503 259 147 48 31 12</canonical_bands>
                <polymorphic_bands>515 259 147 48 31</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 259 207 31</canonical_bands>
                <polymorphic_bands>710 259 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAACGCATTTGTCTTCATA</pcr_primer_p1>
		<pcr_primer_p2>GATTGAAGCAAGAGTTTGATAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATC</canonical_amplicon>
		<polymorphic_amplicon>GAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAAYCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27311</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21610</contig_pos>
        <strand>+</strand>
        <context>TGACRAAYCT[A/G]AATTTYKGGY</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCT</left_flank>
        <right_flank>AATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTCTTCACTTGAGCAATATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTT</canonical>
            <polymorphic>AGTTCTTCACTTGAGCAATATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTRAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAACGCATTTGTCTTCATA</pcr_primer_p1>
		<pcr_primer_p2>GATTGAAGCAAGAGTTTGATAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATC</canonical_amplicon>
		<polymorphic_amplicon>GAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTRAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27312</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21621</contig_pos>
        <strand>+</strand>
        <context>AATTTYKGGY[C/T]TTCATAKKRR</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGT</left_flank>
        <right_flank>TTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGCAATATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGT</canonical>
            <polymorphic>TGAGCAATATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTYTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAACGCATTTGTCTTCATA</pcr_primer_p1>
		<pcr_primer_p2>GATTGAAGCAAGAGTTTGATAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATC</canonical_amplicon>
		<polymorphic_amplicon>GAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTYTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27313</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21629</contig_pos>
        <strand>+</strand>
        <context>GYYTTCATAK[G/T]RRTTTCWWAA</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAG</left_flank>
        <right_flank>GATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCA</canonical>
            <polymorphic>ATCAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGKGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAACGCATTTGTCTTCATA</pcr_primer_p1>
		<pcr_primer_p2>GATTGAAGCAAGAGTTTGATAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATC</canonical_amplicon>
		<polymorphic_amplicon>GAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGKGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27314</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21631</contig_pos>
        <strand>+</strand>
        <context>YTTCATAKKR[A/G]TTTCWWAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCG</left_flank>
        <right_flank>TTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAAT</canonical>
            <polymorphic>CAGCTTCTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGRTTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAACGCATTTGTCTTCATA</pcr_primer_p1>
		<pcr_primer_p2>GATTGAAGCAAGAGTTTGATAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATC</canonical_amplicon>
		<polymorphic_amplicon>GAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGRTTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27315</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21637</contig_pos>
        <strand>+</strand>
        <context>AKKRRTTTCW[A/T]AACTGTCAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCA</left_flank>
        <right_flank>AACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTG</canonical>
            <polymorphic>CTGGTACCCAGCATTCAGCAATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAWAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAACGCATTTGTCTTCATA</pcr_primer_p1>
		<pcr_primer_p2>GATTGAAGCAAGAGTTTGATAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATC</canonical_amplicon>
		<polymorphic_amplicon>GAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAWAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27316</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>21657</contig_pos>
        <strand>+</strand>
        <context>GACTTACTTR[A/G]GCTCATTYTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTA</left_flank>
        <right_flank>GCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAA</canonical>
            <polymorphic>ATCAAACATTTTTGAGTGACATCAACGGAGAACATGTTGAGAGTATGGAAGATTGACTTGACCTTCAAAAGCATAATTCCCCATTTTCTCAAGTTTCCAGCTGCGGTATGAATACACTTTGCACGATAATCCAAAGTCTTCTCAATAACAGCTTTCATATCATTGGCTTGGATCTTAATGTTATTCAAGAGTTTGGTTCTCTCGGCTGGATTCTCTGGAACTGTGTAGCACTTGGCTTGGAATCCGTCACAGATCTTCTTGACTTTGGAACGAAGTTGTTCTCCGGAGAAGAAGAGAATGAAAACGCATTTGTCTTCATATTCATGAGAAAAGAGGTCAGTTTTCTCTTGGATTTGAACAAACTTGGCGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTARGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTTAAG</site>
                <isoschizomers>
                    <enzyme>AflII</enzyme>
                    <enzyme>BfrI</enzyme>
                    <enzyme>BspTI</enzyme>
                    <enzyme>Bst98I</enzyme>
                    <enzyme>MspCI</enzyme>
                    <enzyme>Vha464I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>350 216 126 100 77 72 51 8</canonical_bands>
                <polymorphic_bands>427 216 126 100 72 51 8</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>266 206 100 93 72 51 39 36 33 30 21 15 15 10 8 5</canonical_bands>
                <polymorphic_bands>287 206 100 93 72 51 39 36 33 30 15 15 10 8 5</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>503 322 175</canonical_bands>
                <polymorphic_bands>825 175</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>408 318 162 88 24</canonical_bands>
                <polymorphic_bands>570 318 88 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACTCTTGGCACGTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>TATTCAATTGCTTGAGATGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>ATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATA</canonical_amplicon>
		<polymorphic_amplicon>ATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTARGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27317</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>22024</contig_pos>
        <strand>+</strand>
        <context>GATGAAAAAA[A/T]AACTMAGAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAA</left_flank>
        <right_flank>AACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGTTTTTTTAGGTTTTAGTCGCCCTGGAATTTTTTAATTCAAACCAAAATTGGGGTACCAACAATGCAATAAAAACTGGATACAAAAAAGTTTTAAATCCTTGAAATCAGCTGAAAGTAAGCTTCGAACCGGTCAAGAAAAGGTAAAAGTGCTCCAGGACTGAAGACTGAAAACCGAAGACAAACTTTTTTGGTTTTCAATTTTCGTCTTATCAGCTCGAGTGTGCACAATGGAGCGAAAAGGAAATGGTGGTGCACTATCAATTTCCAATCATT</canonical>
            <polymorphic>CGAACACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAAWAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGTTTTTTTAGGTTTTAGTCGCCCTGGAATTTTTTAATTCAAACCAAAATTGGGGTACCAACAATGCAATAAAAACTGGATACAAAAAAGTTTTAAATCCTTGAAATCAGCTGAAAGTAAGCTTCGAACCGGTCAAGAAAAGGTAAAAGTGCTCCAGGACTGAAGACTGAAAACCGAAGACAAACTTTTTTGGTTTTCAATTTTCGTCTTATCAGCTCGAGTGTGCACAATGGAGCGAAAAGGAAATGGTGGTGCACTATCAATTTCCAATCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCAGATCTTTGTTGATTTCAT</pcr_primer_p1>
		<pcr_primer_p2>GAAATTGTGCCAAATCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTC</canonical_amplicon>
		<polymorphic_amplicon>ACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAAWAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27318</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>22029</contig_pos>
        <strand>+</strand>
        <context>AAAAAWAACT[A/C]AGAATAGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACT</left_flank>
        <right_flank>AGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGTTTTTTTAGGTTTTAGTCGCCCTGGAATTTTTTAATTCAAACCAAAATTGGGGTACCAACAATGCAATAAAAACTGGATACAAAAAAGTTTTAAATCCTTGAAATCAGCTGAAAGTAAGCTTCGAACCGGTCAAGAAAAGGTAAAAGTGCTCCAGGACTGAAGACTGAAAACCGAAGACAAACTTTTTTGGTTTTCAATTTTCGTCTTATCAGCTCGAGTGTGCACAATGGAGCGAAAAGGAAATGGTGGTGCACTATCAATTTCCAATCATTTTCTG</canonical>
            <polymorphic>ACTTTAGCACGGGAGAGTCTCCAGAGGAAACGCTCAAAGGCAATACTCTTGGCACGTTTGATGACTCCGGTGACGAATCTAAATTTCGGGTTTTCATAGCGATTTCAAAACTGTCAAGACTTACTTAAGCTCATTTTCATCTCTGACTGGCTTATCAAACTCTTGCTTCAATCCGACACTAAATGGCCCAGCCTCTCCGCGAGCAGCTTCGGAGATGGACATTGCTGCTTCTCTCTTGCTCTGATGGTCCATCAAAGACGTAACATGCTCCAAGACAGCTTTCATCTCAAGCAATTGAATATGGTTGGTCTTGAGAGTTTTCGTGTTCTTGTTGATTTGAAGAAGTTCTTCTTCGAGTTTCTCCAAGTTGGCTTCCATTTCTCCCATGTGTTTTGGTTGAGGAGCTGGGATATGGTCATTGTAGTCTGGGATTGGCACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTMAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTCATGTGCTCCGATCGGTAGATGGAACCCATTTTTTGGAGTTTTTTTAGGTTTTAGTCGCCCTGGAATTTTTTAATTCAAACCAAAATTGGGGTACCAACAATGCAATAAAAACTGGATACAAAAAAGTTTTAAATCCTTGAAATCAGCTGAAAGTAAGCTTCGAACCGGTCAAGAAAAGGTAAAAGTGCTCCAGGACTGAAGACTGAAAACCGAAGACAAACTTTTTTGGTTTTCAATTTTCGTCTTATCAGCTCGAGTGTGCACAATGGAGCGAAAAGGAAATGGTGGTGCACTATCAATTTCCAATCATTTTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCAGATCTTTGTTGATTTCAT</pcr_primer_p1>
		<pcr_primer_p2>GAAATTGTGCCAAATCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTAAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTC</canonical_amplicon>
		<polymorphic_amplicon>ACCAGATCTTTGTTGATTTCATCCTCAACGAACGCTAAAAATAATTCAGATGAAAAAATAACTMAGAATAGAATAACTCACTAATCTTTCTATCCATCTCTTCACATCTTCTAACTTCATTCACAAACTTTCTCTGGTACGAGTTCTGTTCCTCGTTCAAGTCAATAAATTGAGCCATTCCTAGCTCTCCAAGTTCGGCGACACATTGATAGGCGGATTCGGATTGGAAGAAGATTTGGCACAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27319</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>69316</contig_pos>
        <strand>+</strand>
        <context>TCAAGTTTGT[C/T]TATTTTTCGC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCGAATTTTTATTGAATTTAGCCAAAAATTTTCAGTTCTCAAGTTTGT</left_flank>
        <right_flank>TATTTTTCGCCATTTTTTTTCAGTTTTTTTTTTTCTGGAATCCTAAATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGGAACACAATATAAGAATATATATGCAAAAAGATATAAGCCCGTCTAGTTCTGTATTGTGGTTGTTGTTGTTATTTTCGTCAAGTGAAAATCTTCAAAAAACGGATACACATAACAACATCGTTTTGAAGAAGAAGAATAATAAGAAGAAGCCTTTTCGTAAATCCAGAAATTAGTATAGATGGAAAAATCTGAAAAACTGGTTATTTTTCACAATCAGACACTTCCAGATTTTTCCTTCTATTTTCAGAATTGAGTTGTCTTGAAAACGGCGTTTCAAGAACCTTCGCTTTAAAAATCATTATATATATTTAAATATTATAGTCCACGAAAATCAGTTAAAAATACGGGAAAAAATTGGGTTACGGTAGTTGTCGTTGTTGGACCTTCGGCCACGGTCACCGACGTTTCTCTTCCACATGTTTTGTACCAGAAAAAATATATTGTTTTCGAATTTTTATTGAATTTAGCCAAAAATTTTCAGTTCTCAAGTTTGTATATTTTTCGCCATTTTTTTTCAGTTTTTTTTTTTCTGGAATCCTAAATCACCACATCCTTCCTCTCTCAATTCACAAATTTTCTATACTTCCTATTCGTTTCTCTGAAAAAAAGTCTCTGAAAAACGTCTTCTTCCGCTTCGAGTCAACTCCAATTTGTAGAGAAAAGATAACTTGAGTTGTTTACCATCAGGCATGCTGCAAGAAAACAAAACAACACGAAAAATAGAAGAAGAAGAAAGCAGTTTACAAATTTTGCATTTACACACTCTTTTGCTTTTTAGCTTGTTTATGTTTTATCTCAAGCCACGCCCCCTTTTTCAGAACCCATCTCTGATTCTGACGCCGCATCCCTCGATTCTGAAAACTTCGAAGGACAAGAAGCTTACTTGATCATCGTCGTCGTGTATTTGTACAGTATCTACTCTCTTCAATCCGCACGCTACTTCCTCACCTCCCATTTTGCATCCTTTCCAAACACACCTAGTCTCGCGCATGTTT</canonical>
            <polymorphic>TTGGGAACACAATATAAGAATATATATGCAAAAAGATATAAGCCCGTCTAGTTCTGTATTGTGGTTGTTGTTGTTATTTTCGTCAAGTGAAAATCTTCAAAAAACGGATACACATAACAACATCGTTTTGAAGAAGAAGAATAATAAGAAGAAGCCTTTTCGTAAATCCAGAAATTAGTATAGATGGAAAAATCTGAAAAACTGGTTATTTTTCACAATCAGACACTTCCAGATTTTTCCTTCTATTTTCAGAATTGAGTTGTCTTGAAAACGGCGTTTCAAGAACCTTCGCTTTAAAAATCATTATATATATTTAAATATTATAGTCCACGAAAATCAGTTAAAAATACGGGAAAAAATTGGGTTACGGTAGTTGTCGTTGTTGGACCTTCGGCCACGGTCACCGACGTTTCTCTTCCACATGTTTTGTACCAGAAAAAATATATTGTTTTCGAATTTTTATTGAATTTAGCCAAAAATTTTCAGTTCTCAAGTTTGTYTATTTTTCGCCATTTTTTTTCAGTTTTTTTTTTTCTGGAATCCTAAATCACCACATCCTTCCTCTCTCAATTCACAAATTTTCTATACTTCCTATTCGTTTCTCTGAAAAAAAGTCTCTGAAAAACGTCTTCTTCCGCTTCGAGTCAACTCCAATTTGTAGAGAAAAGATAACTTGAGTTGTTTACCATCAGGCATGCTGCAAGAAAACAAAACAACACGAAAAATAGAAGAAGAAGAAAGCAGTTTACAAATTTTGCATTTACACACTCTTTTGCTTTTTAGCTTGTTTATGTTTTATCTCAAGCCACGCCCCCTTTTTCAGAACCCATCTCTGATTCTGACGCCGCATCCCTCGATTCTGAAAACTTCGAAGGACAAGAAGCTTACTTGATCATCGTCGTCGTGTATTTGTACAGTATCTACTCTCTTCAATCCGCACGCTACTTCCTCACCTCCCATTTTGCATCCTTTCCAAACACACCTAGTCTCGCGCATGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGAATTGAGTTGTCTTGAAA</pcr_primer_p1>
		<pcr_primer_p2>GGATGTGGTGATTTAGGATTC</pcr_primer_p2>
		<pcr_amplicon_size>310</pcr_amplicon_size>
		<canonical_amplicon>TCAGAATTGAGTTGTCTTGAAAACGGCGTTTCAAGAACCTTCGCTTTAAAAATCATTATATATATTTAAATATTATAGTCCACGAAAATCAGTTAAAAATACGGGAAAAAATTGGGTTACGGTAGTTGTCGTTGTTGGACCTTCGGCCACGGTCACCGACGTTTCTCTTCCACATGTTTTGTACCAGAAAAAATATATTGTTTTCGAATTTTTATTGAATTTAGCCAAAAATTTTCAGTTCTCAAGTTTGTATATTTTTCGCCATTTTTTTTCAGTTTTTTTTTTTCTGGAATCCTAAATCACCACATCC</canonical_amplicon>
		<polymorphic_amplicon>TCAGAATTGAGTTGTCTTGAAAACGGCGTTTCAAGAACCTTCGCTTTAAAAATCATTATATATATTTAAATATTATAGTCCACGAAAATCAGTTAAAAATACGGGAAAAAATTGGGTTACGGTAGTTGTCGTTGTTGGACCTTCGGCCACGGTCACCGACGTTTCTCTTCCACATGTTTTGTACCAGAAAAAATATATTGTTTTCGAATTTTTATTGAATTTAGCCAAAAATTTTCAGTTCTCAAGTTTGTYTATTTTTCGCCATTTTTTTTCAGTTTTTTTTTTTCTGGAATCCTAAATCACCACATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27320</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>69411</contig_pos>
        <strand>+</strand>
        <context>ATACTTCCTA[C/T]TCGTTTCTCY</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATCACCACATCCTTCCTCTCTCAATTCACAAATTTTCTATACTTCCTA</left_flank>
        <right_flank>TCGTTTCTCTGAAAAAAAGTCTCTGAAAAACGTCTTCTTCCGCTTCGAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAAAAAACGGATACACATAACAACATCGTTTTGAAGAAGAAGAATAATAAGAAGAAGCCTTTTCGTAAATCCAGAAATTAGTATAGATGGAAAAATCTGAAAAACTGGTTATTTTTCACAATCAGACACTTCCAGATTTTTCCTTCTATTTTCAGAATTGAGTTGTCTTGAAAACGGCGTTTCAAGAACCTTCGCTTTAAAAATCATTATATATATTTAAATATTATAGTCCACGAAAATCAGTTAAAAATACGGGAAAAAATTGGGTTACGGTAGTTGTCGTTGTTGGACCTTCGGCCACGGTCACCGACGTTTCTCTTCCACATGTTTTGTACCAGAAAAAATATATTGTTTTCGAATTTTTATTGAATTTAGCCAAAAATTTTCAGTTCTCAAGTTTGTATATTTTTCGCCATTTTTTTTCAGTTTTTTTTTTTCTGGAATCCTAAATCACCACATCCTTCCTCTCTCAATTCACAAATTTTCTATACTTCCTATTCGTTTCTCTGAAAAAAAGTCTCTGAAAAACGTCTTCTTCCGCTTCGAGTCAACTCCAATTTGTAGAGAAAAGATAACTTGAGTTGTTTACCATCAGGCATGCTGCAAGAAAACAAAACAACACGAAAAATAGAAGAAGAAGAAAGCAGTTTACAAATTTTGCATTTACACACTCTTTTGCTTTTTAGCTTGTTTATGTTTTATCTCAAGCCACGCCCCCTTTTTCAGAACCCATCTCTGATTCTGACGCCGCATCCCTCGATTCTGAAAACTTCGAAGGACAAGAAGCTTACTTGATCATCGTCGTCGTGTATTTGTACAGTATCTACTCTCTTCAATCCGCACGCTACTTCCTCACCTCCCATTTTGCATCCTTTCCAAACACACCTAGTCTCGCGCATGTTTTCAACCACCCGGGAGCCGCTCCTTCCACACAATTCTCCCCTCTGCCGTTTTTTTTTCACAAAAACTATTATAAACCAACTTTGAACGAGAGAACT</canonical>
            <polymorphic>TTCAAAAAACGGATACACATAACAACATCGTTTTGAAGAAGAAGAATAATAAGAAGAAGCCTTTTCGTAAATCCAGAAATTAGTATAGATGGAAAAATCTGAAAAACTGGTTATTTTTCACAATCAGACACTTCCAGATTTTTCCTTCTATTTTCAGAATTGAGTTGTCTTGAAAACGGCGTTTCAAGAACCTTCGCTTTAAAAATCATTATATATATTTAAATATTATAGTCCACGAAAATCAGTTAAAAATACGGGAAAAAATTGGGTTACGGTAGTTGTCGTTGTTGGACCTTCGGCCACGGTCACCGACGTTTCTCTTCCACATGTTTTGTACCAGAAAAAATATATTGTTTTCGAATTTTTATTGAATTTAGCCAAAAATTTTCAGTTCTCAAGTTTGTATATTTTTCGCCATTTTTTTTCAGTTTTTTTTTTTCTGGAATCCTAAATCACCACATCCTTCCTCTCTCAATTCACAAATTTTCTATACTTCCTAYTCGTTTCTCTGAAAAAAAGTCTCTGAAAAACGTCTTCTTCCGCTTCGAGTCAACTCCAATTTGTAGAGAAAAGATAACTTGAGTTGTTTACCATCAGGCATGCTGCAAGAAAACAAAACAACACGAAAAATAGAAGAAGAAGAAAGCAGTTTACAAATTTTGCATTTACACACTCTTTTGCTTTTTAGCTTGTTTATGTTTTATCTCAAGCCACGCCCCCTTTTTCAGAACCCATCTCTGATTCTGACGCCGCATCCCTCGATTCTGAAAACTTCGAAGGACAAGAAGCTTACTTGATCATCGTCGTCGTGTATTTGTACAGTATCTACTCTCTTCAATCCGCACGCTACTTCCTCACCTCCCATTTTGCATCCTTTCCAAACACACCTAGTCTCGCGCATGTTTTCAACCACCCGGGAGCCGCTCCTTCCACACAATTCTCCCCTCTGCCGTTTTTTTTTCACAAAAACTATTATAAACCAACTTTGAACGAGAGAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTGGAATCCTAAATCAC</pcr_primer_p1>
		<pcr_primer_p2>AAAAGCAAAAGAGTGTGTAAATG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTGGAATCCTAAATCACCACATCCTTCCTCTCTCAATTCACAAATTTTCTATACTTCCTATTCGTTTCTCTGAAAAAAAGTCTCTGAAAAACGTCTTCTTCCGCTTCGAGTCAACTCCAATTTGTAGAGAAAAGATAACTTGAGTTGTTTACCATCAGGCATGCTGCAAGAAAACAAAACAACACGAAAAATAGAAGAAGAAGAAAGCAGTTTACAAATTTTGCATTTACACACTCTTTTGCTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTGGAATCCTAAATCACCACATCCTTCCTCTCTCAATTCACAAATTTTCTATACTTCCTAYTCGTTTCTCTGAAAAAAAGTCTCTGAAAAACGTCTTCTTCCGCTTCGAGTCAACTCCAATTTGTAGAGAAAAGATAACTTGAGTTGTTTACCATCAGGCATGCTGCAAGAAAACAAAACAACACGAAAAATAGAAGAAGAAGAAAGCAGTTTACAAATTTTGCATTTACACACTCTTTTGCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27321</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>69421</contig_pos>
        <strand>+</strand>
        <context>YTCGTTTCTC[C/T]GAAAAAAAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCCTTCCTCTCTCAATTCACAAATTTTCTATACTTCCTATTCGTTTCTC</left_flank>
        <right_flank>GAAAAAAAGTCTCTGAAAAACGTCTTCTTCCGCTTCGAGTCAACTCCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATACACATAACAACATCGTTTTGAAGAAGAAGAATAATAAGAAGAAGCCTTTTCGTAAATCCAGAAATTAGTATAGATGGAAAAATCTGAAAAACTGGTTATTTTTCACAATCAGACACTTCCAGATTTTTCCTTCTATTTTCAGAATTGAGTTGTCTTGAAAACGGCGTTTCAAGAACCTTCGCTTTAAAAATCATTATATATATTTAAATATTATAGTCCACGAAAATCAGTTAAAAATACGGGAAAAAATTGGGTTACGGTAGTTGTCGTTGTTGGACCTTCGGCCACGGTCACCGACGTTTCTCTTCCACATGTTTTGTACCAGAAAAAATATATTGTTTTCGAATTTTTATTGAATTTAGCCAAAAATTTTCAGTTCTCAAGTTTGTATATTTTTCGCCATTTTTTTTCAGTTTTTTTTTTTCTGGAATCCTAAATCACCACATCCTTCCTCTCTCAATTCACAAATTTTCTATACTTCCTATTCGTTTCTCTGAAAAAAAGTCTCTGAAAAACGTCTTCTTCCGCTTCGAGTCAACTCCAATTTGTAGAGAAAAGATAACTTGAGTTGTTTACCATCAGGCATGCTGCAAGAAAACAAAACAACACGAAAAATAGAAGAAGAAGAAAGCAGTTTACAAATTTTGCATTTACACACTCTTTTGCTTTTTAGCTTGTTTATGTTTTATCTCAAGCCACGCCCCCTTTTTCAGAACCCATCTCTGATTCTGACGCCGCATCCCTCGATTCTGAAAACTTCGAAGGACAAGAAGCTTACTTGATCATCGTCGTCGTGTATTTGTACAGTATCTACTCTCTTCAATCCGCACGCTACTTCCTCACCTCCCATTTTGCATCCTTTCCAAACACACCTAGTCTCGCGCATGTTTTCAACCACCCGGGAGCCGCTCCTTCCACACAATTCTCCCCTCTGCCGTTTTTTTTTCACAAAAACTATTATAAACCAACTTTGAACGAGAGAACTTTGAGTGTTT</canonical>
            <polymorphic>GGATACACATAACAACATCGTTTTGAAGAAGAAGAATAATAAGAAGAAGCCTTTTCGTAAATCCAGAAATTAGTATAGATGGAAAAATCTGAAAAACTGGTTATTTTTCACAATCAGACACTTCCAGATTTTTCCTTCTATTTTCAGAATTGAGTTGTCTTGAAAACGGCGTTTCAAGAACCTTCGCTTTAAAAATCATTATATATATTTAAATATTATAGTCCACGAAAATCAGTTAAAAATACGGGAAAAAATTGGGTTACGGTAGTTGTCGTTGTTGGACCTTCGGCCACGGTCACCGACGTTTCTCTTCCACATGTTTTGTACCAGAAAAAATATATTGTTTTCGAATTTTTATTGAATTTAGCCAAAAATTTTCAGTTCTCAAGTTTGTATATTTTTCGCCATTTTTTTTCAGTTTTTTTTTTTCTGGAATCCTAAATCACCACATCCTTCCTCTCTCAATTCACAAATTTTCTATACTTCCTATTCGTTTCTCYGAAAAAAAGTCTCTGAAAAACGTCTTCTTCCGCTTCGAGTCAACTCCAATTTGTAGAGAAAAGATAACTTGAGTTGTTTACCATCAGGCATGCTGCAAGAAAACAAAACAACACGAAAAATAGAAGAAGAAGAAAGCAGTTTACAAATTTTGCATTTACACACTCTTTTGCTTTTTAGCTTGTTTATGTTTTATCTCAAGCCACGCCCCCTTTTTCAGAACCCATCTCTGATTCTGACGCCGCATCCCTCGATTCTGAAAACTTCGAAGGACAAGAAGCTTACTTGATCATCGTCGTCGTGTATTTGTACAGTATCTACTCTCTTCAATCCGCACGCTACTTCCTCACCTCCCATTTTGCATCCTTTCCAAACACACCTAGTCTCGCGCATGTTTTCAACCACCCGGGAGCCGCTCCTTCCACACAATTCTCCCCTCTGCCGTTTTTTTTTCACAAAAACTATTATAAACCAACTTTGAACGAGAGAACTTTGAGTGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTGGAATCCTAAATCAC</pcr_primer_p1>
		<pcr_primer_p2>AAAAGCAAAAGAGTGTGTAAATG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTGGAATCCTAAATCACCACATCCTTCCTCTCTCAATTCACAAATTTTCTATACTTCCTATTCGTTTCTCTGAAAAAAAGTCTCTGAAAAACGTCTTCTTCCGCTTCGAGTCAACTCCAATTTGTAGAGAAAAGATAACTTGAGTTGTTTACCATCAGGCATGCTGCAAGAAAACAAAACAACACGAAAAATAGAAGAAGAAGAAAGCAGTTTACAAATTTTGCATTTACACACTCTTTTGCTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTGGAATCCTAAATCACCACATCCTTCCTCTCTCAATTCACAAATTTTCTATACTTCCTATTCGTTTCTCYGAAAAAAAGTCTCTGAAAAACGTCTTCTTCCGCTTCGAGTCAACTCCAATTTGTAGAGAAAAGATAACTTGAGTTGTTTACCATCAGGCATGCTGCAAGAAAACAAAACAACACGAAAAATAGAAGAAGAAGAAAGCAGTTTACAAATTTTGCATTTACACACTCTTTTGCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27322</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>69603</contig_pos>
        <strand>+</strand>
        <context>TTTTTAGCTT[G/T]TTTATGTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAAGCAGTTTACAAATTTTGCATTTACACACTCTTTTGCTTTTTAGCTT</left_flank>
        <right_flank>TTTATGTTTTATCTCAAGCCACGCCCCCTTTTTCAGAACCCATCTCTGAT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGCTTTAAAAATCATTATATATATTTAAATATTATAGTCCACGAAAATCAGTTAAAAATACGGGAAAAAATTGGGTTACGGTAGTTGTCGTTGTTGGACCTTCGGCCACGGTCACCGACGTTTCTCTTCCACATGTTTTGTACCAGAAAAAATATATTGTTTTCGAATTTTTATTGAATTTAGCCAAAAATTTTCAGTTCTCAAGTTTGTATATTTTTCGCCATTTTTTTTCAGTTTTTTTTTTTCTGGAATCCTAAATCACCACATCCTTCCTCTCTCAATTCACAAATTTTCTATACTTCCTATTCGTTTCTCTGAAAAAAAGTCTCTGAAAAACGTCTTCTTCCGCTTCGAGTCAACTCCAATTTGTAGAGAAAAGATAACTTGAGTTGTTTACCATCAGGCATGCTGCAAGAAAACAAAACAACACGAAAAATAGAAGAAGAAGAAAGCAGTTTACAAATTTTGCATTTACACACTCTTTTGCTTTTTAGCTTGTTTATGTTTTATCTCAAGCCACGCCCCCTTTTTCAGAACCCATCTCTGATTCTGACGCCGCATCCCTCGATTCTGAAAACTTCGAAGGACAAGAAGCTTACTTGATCATCGTCGTCGTGTATTTGTACAGTATCTACTCTCTTCAATCCGCACGCTACTTCCTCACCTCCCATTTTGCATCCTTTCCAAACACACCTAGTCTCGCGCATGTTTTCAACCACCCGGGAGCCGCTCCTTCCACACAATTCTCCCCTCTGCCGTTTTTTTTTCACAAAAACTATTATAAACCAACTTTGAACGAGAGAACTTTGAGTGTTTATTTTAGATTTTGAAATTCAAAAATTGTTGAAAATCGCAGTTTTGATGGAATTTGATCCTTTTTTGATCCTTTGCTGAGCTCAATGGTTTTCGGAACAAAGCTGTTCAAGATCTGATGTCCGGCCTAAGATCTCATAAGCTGAATAACTTTGTTCAGAAGATTACTGTAGCTACAATAATGC</canonical>
            <polymorphic>TTCGCTTTAAAAATCATTATATATATTTAAATATTATAGTCCACGAAAATCAGTTAAAAATACGGGAAAAAATTGGGTTACGGTAGTTGTCGTTGTTGGACCTTCGGCCACGGTCACCGACGTTTCTCTTCCACATGTTTTGTACCAGAAAAAATATATTGTTTTCGAATTTTTATTGAATTTAGCCAAAAATTTTCAGTTCTCAAGTTTGTATATTTTTCGCCATTTTTTTTCAGTTTTTTTTTTTCTGGAATCCTAAATCACCACATCCTTCCTCTCTCAATTCACAAATTTTCTATACTTCCTATTCGTTTCTCTGAAAAAAAGTCTCTGAAAAACGTCTTCTTCCGCTTCGAGTCAACTCCAATTTGTAGAGAAAAGATAACTTGAGTTGTTTACCATCAGGCATGCTGCAAGAAAACAAAACAACACGAAAAATAGAAGAAGAAGAAAGCAGTTTACAAATTTTGCATTTACACACTCTTTTGCTTTTTAGCTTKTTTATGTTTTATCTCAAGCCACGCCCCCTTTTTCAGAACCCATCTCTGATTCTGACGCCGCATCCCTCGATTCTGAAAACTTCGAAGGACAAGAAGCTTACTTGATCATCGTCGTCGTGTATTTGTACAGTATCTACTCTCTTCAATCCGCACGCTACTTCCTCACCTCCCATTTTGCATCCTTTCCAAACACACCTAGTCTCGCGCATGTTTTCAACCACCCGGGAGCCGCTCCTTCCACACAATTCTCCCCTCTGCCGTTTTTTTTTCACAAAAACTATTATAAACCAACTTTGAACGAGAGAACTTTGAGTGTTTATTTTAGATTTTGAAATTCAAAAATTGTTGAAAATCGCAGTTTTGATGGAATTTGATCCTTTTTTGATCCTTTGCTGAGCTCAATGGTTTTCGGAACAAAGCTGTTCAAGATCTGATGTCCGGCCTAAGATCTCATAAGCTGAATAACTTTGTTCAGAAGATTACTGTAGCTACAATAATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAACACGAAAAATAGAAGAAGA</pcr_primer_p1>
		<pcr_primer_p2>AATGGGAGGTGAGGAAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAACACGAAAAATAGAAGAAGAAGAAAGCAGTTTACAAATTTTGCATTTACACACTCTTTTGCTTTTTAGCTTGTTTATGTTTTATCTCAAGCCACGCCCCCTTTTTCAGAACCCATCTCTGATTCTGACGCCGCATCCCTCGATTCTGAAAACTTCGAAGGACAAGAAGCTTACTTGATCATCGTCGTCGTGTATTTGTACAGTATCTACTCTCTTCAATCCGCACGCTACTTCCTCACCTCCCATT</canonical_amplicon>
		<polymorphic_amplicon>ACAACACGAAAAATAGAAGAAGAAGAAAGCAGTTTACAAATTTTGCATTTACACACTCTTTTGCTTTTTAGCTTKTTTATGTTTTATCTCAAGCCACGCCCCCTTTTTCAGAACCCATCTCTGATTCTGACGCCGCATCCCTCGATTCTGAAAACTTCGAAGGACAAGAAGCTTACTTGATCATCGTCGTCGTGTATTTGTACAGTATCTACTCTCTTCAATCCGCACGCTACTTCCTCACCTCCCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27323</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>69824</contig_pos>
        <strand>+</strand>
        <context>TTTTCAACCA[C/T]CCGGGAGCCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATTTTGCATCCTTTCCAAACACACCTAGTCTCGCGCATGTTTTCAACCA</left_flank>
        <right_flank>CCGGGAGCCGCTCCTTCCACACAATTCTCCCCTCTGCCGTTTTTTTTTCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCATTTTTTTTCAGTTTTTTTTTTTCTGGAATCCTAAATCACCACATCCTTCCTCTCTCAATTCACAAATTTTCTATACTTCCTATTCGTTTCTCTGAAAAAAAGTCTCTGAAAAACGTCTTCTTCCGCTTCGAGTCAACTCCAATTTGTAGAGAAAAGATAACTTGAGTTGTTTACCATCAGGCATGCTGCAAGAAAACAAAACAACACGAAAAATAGAAGAAGAAGAAAGCAGTTTACAAATTTTGCATTTACACACTCTTTTGCTTTTTAGCTTGTTTATGTTTTATCTCAAGCCACGCCCCCTTTTTCAGAACCCATCTCTGATTCTGACGCCGCATCCCTCGATTCTGAAAACTTCGAAGGACAAGAAGCTTACTTGATCATCGTCGTCGTGTATTTGTACAGTATCTACTCTCTTCAATCCGCACGCTACTTCCTCACCTCCCATTTTGCATCCTTTCCAAACACACCTAGTCTCGCGCATGTTTTCAACCACCCGGGAGCCGCTCCTTCCACACAATTCTCCCCTCTGCCGTTTTTTTTTCACAAAAACTATTATAAACCAACTTTGAACGAGAGAACTTTGAGTGTTTATTTTAGATTTTGAAATTCAAAAATTGTTGAAAATCGCAGTTTTGATGGAATTTGATCCTTTTTTGATCCTTTGCTGAGCTCAATGGTTTTCGGAACAAAGCTGTTCAAGATCTGATGTCCGGCCTAAGATCTCATAAGCTGAATAACTTTGTTCAGAAGATTACTGTAGCTACAATAATGCATCAGAACTTAGGATCGGAAAAAGATTTGAGGACGTCAGGAAACTACTACCGTATTTTCTTTGATAGTATCCCACTTTATTTGAGCTCAATTATCTTGATTTCATCAAAAGATATCAAAACTCTATCAACTGATAAAATATTGGCAATGTTATGATGAATTATTTATCAGTTGATAAGTTCTTGATATCTTTCAAAAAATCGAGATAGATGAGTTTAAAAC</canonical>
            <polymorphic>GCCATTTTTTTTCAGTTTTTTTTTTTCTGGAATCCTAAATCACCACATCCTTCCTCTCTCAATTCACAAATTTTCTATACTTCCTATTCGTTTCTCTGAAAAAAAGTCTCTGAAAAACGTCTTCTTCCGCTTCGAGTCAACTCCAATTTGTAGAGAAAAGATAACTTGAGTTGTTTACCATCAGGCATGCTGCAAGAAAACAAAACAACACGAAAAATAGAAGAAGAAGAAAGCAGTTTACAAATTTTGCATTTACACACTCTTTTGCTTTTTAGCTTGTTTATGTTTTATCTCAAGCCACGCCCCCTTTTTCAGAACCCATCTCTGATTCTGACGCCGCATCCCTCGATTCTGAAAACTTCGAAGGACAAGAAGCTTACTTGATCATCGTCGTCGTGTATTTGTACAGTATCTACTCTCTTCAATCCGCACGCTACTTCCTCACCTCCCATTTTGCATCCTTTCCAAACACACCTAGTCTCGCGCATGTTTTCAACCAYCCGGGAGCCGCTCCTTCCACACAATTCTCCCCTCTGCCGTTTTTTTTTCACAAAAACTATTATAAACCAACTTTGAACGAGAGAACTTTGAGTGTTTATTTTAGATTTTGAAATTCAAAAATTGTTGAAAATCGCAGTTTTGATGGAATTTGATCCTTTTTTGATCCTTTGCTGAGCTCAATGGTTTTCGGAACAAAGCTGTTCAAGATCTGATGTCCGGCCTAAGATCTCATAAGCTGAATAACTTTGTTCAGAAGATTACTGTAGCTACAATAATGCATCAGAACTTAGGATCGGAAAAAGATTTGAGGACGTCAGGAAACTACTACCGTATTTTCTTTGATAGTATCCCACTTTATTTGAGCTCAATTATCTTGATTTCATCAAAAGATATCAAAACTCTATCAACTGATAAAATATTGGCAATGTTATGATGAATTATTTATCAGTTGATAAGTTCTTGATATCTTTCAAAAAATCGAGATAGATGAGTTTAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>502 498</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>502 498</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCCGGG</site>
                <isoschizomers>
                    <enzyme>Cfr9I</enzyme>
                    <enzyme>PspAI</enzyme>
                    <enzyme>SmaI</enzyme>
                    <enzyme>XmaCI</enzyme>
                    <enzyme>XmaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>259 147 144 98 47 44 42 41 33 29 27 26 21 20 13 3 2 2 2</canonical_bands>
                <polymorphic_bands>259 147 144 98 47 46 44 42 41 33 29 27 21 13 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGTCGTGTATTTGTACAGTATC</pcr_primer_p1>
		<pcr_primer_p2>ACTGCGATTTTCAACAATTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCGTCGTGTATTTGTACAGTATCTACTCTCTTCAATCCGCACGCTACTTCCTCACCTCCCATTTTGCATCCTTTCCAAACACACCTAGTCTCGCGCATGTTTTCAACCACCCGGGAGCCGCTCCTTCCACACAATTCTCCCCTCTGCCGTTTTTTTTTCACAAAAACTATTATAAACCAACTTTGAACGAGAGAACTTTGAGTGTTTATTTTAGATTTTGAAATTCAAAAATTGTTGAAAATCGCAGT</canonical_amplicon>
		<polymorphic_amplicon>TCGTCGTGTATTTGTACAGTATCTACTCTCTTCAATCCGCACGCTACTTCCTCACCTCCCATTTTGCATCCTTTCCAAACACACCTAGTCTCGCGCATGTTTTCAACCAYCCGGGAGCCGCTCCTTCCACACAATTCTCCCCTCTGCCGTTTTTTTTTCACAAAAACTATTATAAACCAACTTTGAACGAGAGAACTTTGAGTGTTTATTTTAGATTTTGAAATTCAAAAATTGTTGAAAATCGCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27324</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>70017</contig_pos>
        <strand>+</strand>
        <context>GGTTTTCGGA[A/T]CAAAGCTGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGGAATTTGATCCTTTTTTGATCCTTTGCTGAGCTCAATGGTTTTCGGA</left_flank>
        <right_flank>CAAAGCTGTTCAAGATCTGATGTCCGGCCTAAGATCTCATAAGCTGAATA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAAACAAAACAACACGAAAAATAGAAGAAGAAGAAAGCAGTTTACAAATTTTGCATTTACACACTCTTTTGCTTTTTAGCTTGTTTATGTTTTATCTCAAGCCACGCCCCCTTTTTCAGAACCCATCTCTGATTCTGACGCCGCATCCCTCGATTCTGAAAACTTCGAAGGACAAGAAGCTTACTTGATCATCGTCGTCGTGTATTTGTACAGTATCTACTCTCTTCAATCCGCACGCTACTTCCTCACCTCCCATTTTGCATCCTTTCCAAACACACCTAGTCTCGCGCATGTTTTCAACCACCCGGGAGCCGCTCCTTCCACACAATTCTCCCCTCTGCCGTTTTTTTTTCACAAAAACTATTATAAACCAACTTTGAACGAGAGAACTTTGAGTGTTTATTTTAGATTTTGAAATTCAAAAATTGTTGAAAATCGCAGTTTTGATGGAATTTGATCCTTTTTTGATCCTTTGCTGAGCTCAATGGTTTTCGGAACAAAGCTGTTCAAGATCTGATGTCCGGCCTAAGATCTCATAAGCTGAATAACTTTGTTCAGAAGATTACTGTAGCTACAATAATGCATCAGAACTTAGGATCGGAAAAAGATTTGAGGACGTCAGGAAACTACTACCGTATTTTCTTTGATAGTATCCCACTTTATTTGAGCTCAATTATCTTGATTTCATCAAAAGATATCAAAACTCTATCAACTGATAAAATATTGGCAATGTTATGATGAATTATTTATCAGTTGATAAGTTCTTGATATCTTTCAAAAAATCGAGATAGATGAGTTTAAAACTGACGGTTTTGGTTGACTTCTATCAGAGGAAATACGGTAGATTGATCTGAATATTTTTGAAAATATTGAGCTGAAACTTTGATTTTTGTTAAAAAATATTTTTCTTTGTATTCCAAATATCGGCACCGACAACAGTTTTTCCCTTGCTACTTTTAGAAAAAATCCAGAAACAATCCCTCACAAAGAAGTTCAC</canonical>
            <polymorphic>AAGAAAACAAAACAACACGAAAAATAGAAGAAGAAGAAAGCAGTTTACAAATTTTGCATTTACACACTCTTTTGCTTTTTAGCTTGTTTATGTTTTATCTCAAGCCACGCCCCCTTTTTCAGAACCCATCTCTGATTCTGACGCCGCATCCCTCGATTCTGAAAACTTCGAAGGACAAGAAGCTTACTTGATCATCGTCGTCGTGTATTTGTACAGTATCTACTCTCTTCAATCCGCACGCTACTTCCTCACCTCCCATTTTGCATCCTTTCCAAACACACCTAGTCTCGCGCATGTTTTCAACCACCCGGGAGCCGCTCCTTCCACACAATTCTCCCCTCTGCCGTTTTTTTTTCACAAAAACTATTATAAACCAACTTTGAACGAGAGAACTTTGAGTGTTTATTTTAGATTTTGAAATTCAAAAATTGTTGAAAATCGCAGTTTTGATGGAATTTGATCCTTTTTTGATCCTTTGCTGAGCTCAATGGTTTTCGGAWCAAAGCTGTTCAAGATCTGATGTCCGGCCTAAGATCTCATAAGCTGAATAACTTTGTTCAGAAGATTACTGTAGCTACAATAATGCATCAGAACTTAGGATCGGAAAAAGATTTGAGGACGTCAGGAAACTACTACCGTATTTTCTTTGATAGTATCCCACTTTATTTGAGCTCAATTATCTTGATTTCATCAAAAGATATCAAAACTCTATCAACTGATAAAATATTGGCAATGTTATGATGAATTATTTATCAGTTGATAAGTTCTTGATATCTTTCAAAAAATCGAGATAGATGAGTTTAAAACTGACGGTTTTGGTTGACTTCTATCAGAGGAAATACGGTAGATTGATCTGAATATTTTTGAAAATATTGAGCTGAAACTTTGATTTTTGTTAAAAAATATTTTTCTTTGTATTCCAAATATCGGCACCGACAACAGTTTTTCCCTTGCTACTTTTAGAAAAAATCCAGAAACAATCCCTCACAAAGAAGTTCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATAAACCAACTTTGAACGAGAG</pcr_primer_p1>
		<pcr_primer_p2>AAATCTTTTTCCGATCCTAAGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TATAAACCAACTTTGAACGAGAGAACTTTGAGTGTTTATTTTAGATTTTGAAATTCAAAAATTGTTGAAAATCGCAGTTTTGATGGAATTTGATCCTTTTTTGATCCTTTGCTGAGCTCAATGGTTTTCGGAACAAAGCTGTTCAAGATCTGATGTCCGGCCTAAGATCTCATAAGCTGAATAACTTTGTTCAGAAGATTACTGTAGCTACAATAATGCATCAGAACTTAGGATCGGAAAAAGATTT</canonical_amplicon>
		<polymorphic_amplicon>TATAAACCAACTTTGAACGAGAGAACTTTGAGTGTTTATTTTAGATTTTGAAATTCAAAAATTGTTGAAAATCGCAGTTTTGATGGAATTTGATCCTTTTTTGATCCTTTGCTGAGCTCAATGGTTTTCGGAWCAAAGCTGTTCAAGATCTGATGTCCGGCCTAAGATCTCATAAGCTGAATAACTTTGTTCAGAAGATTACTGTAGCTACAATAATGCATCAGAACTTAGGATCGGAAAAAGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27325</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>74581</contig_pos>
        <strand>+</strand>
        <context>acggtaATTC[A/T]TTTCATAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAAAAATAGAACCCCATGGGCTTCAAAATTAGAGGAAATACGGTAATTC</left_flank>
        <right_flank>TTTCATAACACATTTCGGGTATATTTGGAGTCAGAAACTGGCGTCACCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGGTCCTATTGATTCCACACTATTTTTCTCTCAAAACTTTCAAACGGTCACTCTCTTCTTCTTCTTCTAAAGTTTTATTCACGATTCTACAATGTGTCATCATCCAGTGGGTCTACCAGTTCTTCCCTTTTTTTGGGAATGTTTGTGTCCTTAAAGTGCAAAAGAACACACGATTTTTTGAGAGTGACCGTAACCTGTATACCGTATTTCCTCTAATAGAAGCCCACCTCTATTTGAAGCCCACCTCTATTTGAAGCCCACCTCCAATAGAAGACCACCCTCTGACGTGCTTAAAAACATAGAAGCGCATCCTATAACAAAAGTACGGGCAGTTCAGTTAGTGCAGTTTGAACATTTCAGTTCGTCTATTCGGTTATTGTATATATTTTCTCTCAATTTCAAAAAATTCTGACAATTTCAGTTTTTGGTAATCTCCTAAAAAGGAGGTTGAAAAATAGAACCCCATGGGCTTCAAAATTAGAGGAAATACGGTAATTCATTTCATAACACATTTCGGGTATATTTGGAGTCAGAAACTGGCGTCACCTGTAGTTAGAATGACGTGTCAAGACTACTGTGGTCGAGAAGATATCAGGTAAACCTGAATTCTCAGATTTTTGATTTTTCAAAACCTTGGACTAGTCTAGATTATGATATATCGGAGTTTGTCTTTTTGGATAAATTTTCAAATAATTTCCCTGAAATTTCCAGTCCAGCTCTTATTGTTCATTTCTGGCCAAATCCTGTATTTCCTCTATTAGAAGCCCGCCTATACCGTCAACTTTGGACTCAATTATCTCGATTTCTGTAGATCACATCATCACAAGATATCAATAATTTGCCAATTGATGAAACCTTGGTAGTAATGTGATAAACAATTTATTAGTTGACACATTTTTGGTAACTTTCACAGGAATCGAGATAATCGGGCTCAAAATGGACGGTTTGAGTGGCATTCTATTAGAGGAACTACGGTAGATATCTCTTACACAAATTCGA</canonical>
            <polymorphic>AGGGTCCTATTGATTCCACACTATTTTTCTCTCAAAACTTTCAAACGGTCACTCTCTTCTTCTTCTTCTAAAGTTTTATTCACGATTCTACAATGTGTCATCATCCAGTGGGTCTACCAGTTCTTCCCTTTTTTTGGGAATGTTTGTGTCCTTAAAGTGCAAAAGAACACACGATTTTTTGAGAGTGACCGTAACCTGTATACCGTATTTCCTCTAATAGAAGCCCACCTCTATTTGAAGCCCACCTCTATTTGAAGCCCACCTCCAATAGAAGACCACCCTCTGACGTGCTTAAAAACATAGAAGCGCATCCTATAACAAAAGTACGGGCAGTTCAGTTAGTGCAGTTTGAACATTTCAGTTCGTCTATTCGGTTATTGTATATATTTTCTCTCAATTTCAAAAAATTCTGACAATTTCAGTTTTTGGTAATCTCCTAAAAAGGAGGTTGAAAAATAGAACCCCATGGGCTTCAAAATTAGAGGAAATACGGTAATTCWTTTCATAACACATTTCGGGTATATTTGGAGTCAGAAACTGGCGTCACCTGTAGTTAGAATGACGTGTCAAGACTACTGTGGTCGAGAAGATATCAGGTAAACCTGAATTCTCAGATTTTTGATTTTTCAAAACCTTGGACTAGTCTAGATTATGATATATCGGAGTTTGTCTTTTTGGATAAATTTTCAAATAATTTCCCTGAAATTTCCAGTCCAGCTCTTATTGTTCATTTCTGGCCAAATCCTGTATTTCCTCTATTAGAAGCCCGCCTATACCGTCAACTTTGGACTCAATTATCTCGATTTCTGTAGATCACATCATCACAAGATATCAATAATTTGCCAATTGATGAAACCTTGGTAGTAATGTGATAAACAATTTATTAGTTGACACATTTTTGGTAACTTTCACAGGAATCGAGATAATCGGGCTCAAAATGGACGGTTTGAGTGGCATTCTATTAGAGGAACTACGGTAGATATCTCTTACACAAATTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAGAGTGACCGTAACC</pcr_primer_p1>
		<pcr_primer_p2>ACACGTCATTCTAACTACAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>391</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAGAGTGACCGTAACCTGTATACCGTATTTCCTCTAATAGAAGCCCACCTCTATTTGAAGCCCACCTCTATTTGAAGCCCACCTCCAATAGAAGACCACCCTCTGACGTGCTTAAAAACATAGAAGCGCATCCTATAACAAAAGTACGGGCAGTTCAGTTAGTGCAGTTTGAACATTTCAGTTCGTCTATTCGGTTATTGTATATATTTTCTCTCAATTTCAAAAAATTCTGACAATTTCAGTTTTTGGTAATCTCCTAAAAAGGAGGTTGAAAAATAGAACCCCATGGGCTTCAAAATTAGAGGAAATACGGTAATTCATTTCATAACACATTTCGGGTATATTTGGAGTCAGAAACTGGCGTCACCTGTAGTTAGAATGACGTGT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAGAGTGACCGTAACCTGTATACCGTATTTCCTCTAATAGAAGCCCACCTCTATTTGAAGCCCACCTCTATTTGAAGCCCACCTCCAATAGAAGACCACCCTCTGACGTGCTTAAAAACATAGAAGCGCATCCTATAACAAAAGTACGGGCAGTTCAGTTAGTGCAGTTTGAACATTTCAGTTCGTCTATTCGGTTATTGTATATATTTTCTCTCAATTTCAAAAAATTCTGACAATTTCAGTTTTTGGTAATCTCCTAAAAAGGAGGTTGAAAAATAGAACCCCATGGGCTTCAAAATTAGAGGAAATACGGTAATTCWTTTCATAACACATTTCGGGTATATTTGGAGTCAGAAACTGGCGTCACCTGTAGTTAGAATGACGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27326</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>86038</contig_pos>
        <strand>+</strand>
        <context>TACATGCCTC[A/G]TAATCGTCGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCACCAAATCCTGCAGCTTCTTATATCCTGGATCTCCAATACATGCCTC</left_flank>
        <right_flank>TAATCGTCGCCAACAATTTCTACAGTGTCTGACCAACTTATTCGATGATC</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTATACTTACTTCAATCGACAAATTTCTGAACGAAGCAGCCAAAATAGTCTATGTCCGATACGGTAACTGCTGAGTGCTCGTGTCAACAACATCATTCCAACTTCTGAATAAGCACGTGGTTCGTATTTCAATGCCTGAATGAGTGGGAGAAGGAAGAGATGAACATTGAACTGGCTGAGTTGATCATTCAACTTGTTAACAGCGAACTTTCGAATCACTCGATCAGTACATCGTTTTCCAAGTAGAGTCAATGCAGCAGCCACACTTGGAGCCTTCCATGTCTCAAGCATCACATAGAGTTCCGAAAAGTTTTCACGATCTGTCCACACGATTCTTAGTTCAGAAAGAACAACCAACAAGTCAGGTTCCTGCTTCTGAATATAGTTTCTCCACGACCAAACATGTCGTTGCTCAGAATCGTCTAGAATCACTCCAGATTCATGTTTTTTCACCAAATCCTGCAGCTTCTTATATCCTGGATCTCCAATACATGCCTCGTAATCGTCGCCAACAATTTCTACAGTGTCTGACCAACTTATTCGATGATCCACAAGATACTTGTATTGCGCTTCATTTGGCATTTTCACTCGTCGACCATGACTGGATATTTCAACGGTTACTGACAACGATGTTCCTATTTTCGCACCATTGTGACCAATTCTACTTCTGTTCGCTGACGGTTCTGGCCCCCAGAGGTTCAGTTTTATCTGTCCTTGCCGTAGTTCATCTCGCCAGTCGCTGAGAGAAATGTTCACCCATCCGAGTTCAATTTCTTCTTTCATTTTTGTAGTCTTCATTGAATAGACTCGAACACTTAATATAGCTGATGGTGGCATATCCTTCATGTACAAGTCGAATGTGAAAAATTCTCTTTTCCAGACCAATTTTGTCGTAGGGACTCTAGGAATTTTGATTGTGGCCAGGGTCAATGTTCCGACGTAGACCTTGAATTCCATTCCCAAATAAATATCATGGGAGGCAGTGAACGGAAGTCCAGT</canonical>
            <polymorphic>TCTATACTTACTTCAATCGACAAATTTCTGAACGAAGCAGCCAAAATAGTCTATGTCCGATACGGTAACTGCTGAGTGCTCGTGTCAACAACATCATTCCAACTTCTGAATAAGCACGTGGTTCGTATTTCAATGCCTGAATGAGTGGGAGAAGGAAGAGATGAACATTGAACTGGCTGAGTTGATCATTCAACTTGTTAACAGCGAACTTTCGAATCACTCGATCAGTACATCGTTTTCCAAGTAGAGTCAATGCAGCAGCCACACTTGGAGCCTTCCATGTCTCAAGCATCACATAGAGTTCCGAAAAGTTTTCACGATCTGTCCACACGATTCTTAGTTCAGAAAGAACAACCAACAAGTCAGGTTCCTGCTTCTGAATATAGTTTCTCCACGACCAAACATGTCGTTGCTCAGAATCGTCTAGAATCACTCCAGATTCATGTTTTTTCACCAAATCCTGCAGCTTCTTATATCCTGGATCTCCAATACATGCCTCRTAATCGTCGCCAACAATTTCTACAGTGTCTGACCAACTTATTCGATGATCCACAAGATACTTGTATTGCGCTTCATTTGGCATTTTCACTCGTCGACCATGACTGGATATTTCAACGGTTACTGACAACGATGTTCCTATTTTCGCACCATTGTGACCAATTCTACTTCTGTTCGCTGACGGTTCTGGCCCCCAGAGGTTCAGTTTTATCTGTCCTTGCCGTAGTTCATCTCGCCAGTCGCTGAGAGAAATGTTCACCCATCCGAGTTCAATTTCTTCTTTCATTTTTGTAGTCTTCATTGAATAGACTCGAACACTTAATATAGCTGATGGTGGCATATCCTTCATGTACAAGTCGAATGTGAAAAATTCTCTTTTCCAGACCAATTTTGTCGTAGGGACTCTAGGAATTTTGATTGTGGCCAGGGTCAATGTTCCGACGTAGACCTTGAATTCCATTCCCAAATAAATATCATGGGAGGCAGTGAACGGAAGTCCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGAATCACTCCAGATTCATGT</pcr_primer_p1>
		<pcr_primer_p2>AACAGAAGTAGAATTGGTCACAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAGAATCACTCCAGATTCATGTTTTTTCACCAAATCCTGCAGCTTCTTATATCCTGGATCTCCAATACATGCCTCGTAATCGTCGCCAACAATTTCTACAGTGTCTGACCAACTTATTCGATGATCCACAAGATACTTGTATTGCGCTTCATTTGGCATTTTCACTCGTCGACCATGACTGGATATTTCAACGGTTACTGACAACGATGTTCCTATTTTCGCACCATTGTGACCAATTCTACTTCTGTT</canonical_amplicon>
		<polymorphic_amplicon>CTAGAATCACTCCAGATTCATGTTTTTTCACCAAATCCTGCAGCTTCTTATATCCTGGATCTCCAATACATGCCTCRTAATCGTCGCCAACAATTTCTACAGTGTCTGACCAACTTATTCGATGATCCACAAGATACTTGTATTGCGCTTCATTTGGCATTTTCACTCGTCGACCATGACTGGATATTTCAACGGTTACTGACAACGATGTTCCTATTTTCGCACCATTGTGACCAATTCTACTTCTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27327</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>138224</contig_pos>
        <strand></strand>
        <context>TACCAACCAC[G/A]TTTGAGTAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAGACTGTTTCGCATTCGGTAGTGAAAAACTCACCGTGAGTACCAACCAC</left_flank>
        <right_flank>TTTGAGTAATTACAAAAATAGTCCAAAATAACTGTCGATTTGAACTTTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACTGTATCCCTCTATGAAAATCAAAACCTAGATTTGTTCGAAAACTCCCGCCAGCCGACTTGGGTATCTCGAAGAAAACAGACGCCGCTGTCTCCAAGAATGGAGCATCGAAACTCAAGACAAAGCAAGTGAAACCGTCTGGAGAAAAAGGGTCGAAAGTAAAAAAAACCAGGAGCAAACATGTGAACACTGAGGACGTTCTTCGAAAAAATCAGATGAAAGTTCAGGTCAGTAGTTTTTCTTTAGAAAAAGGAAGCTCGACAAACCGTTTAGTGAATAAGTACCCACGGTGAGTTTTTCACTACCGCTGCTTCAACTTTGGAATTTTTTTCTCGAATTCTAGTCCATAACTTTTTTTCTGTTCCATAAATCTTTAGTAAATTTTATGAAGAATATATAGCAAAAAAATGAATCAGATTTTTTTGTCCGTTGTACTTTAAAACGTCGCAGACTGTTTCGCATTCGGTAGTGAAAAACTCACCGTGAGTACCAACCACGTTTGAGTAATTACAAAAATAGTCCAAAATAACTGTCGATTTGAACTTTTCAGAGTTTGTTGAAAAACTTTTATTCCGGATTTTCAGCATACTTAACTGTAAGATTTCTTTGCCTTATTTTTGAACTTCCGCGACTAACAATGCTAAAATATTAGGTCGTCTCAAAAGTAATCTGTATTTTTTAGGAATGCATTTCGCCCATGTTCGCGGGTCGATTTTCGTTTTCTTTTTTGTTTTAATGATGTTCATCTTTTGTTCATTAAAACATGCCAGTTTGTTTCAAAAAATCTCAGTTCATAGCCTCGCCAACGAAATTTATTATGCTCGCTTAAGAATGGTTAACAGGGTAAGCGCTTCGATGGAAGATCTGACCTCAAGTTGTACCTAGGTGCCTTCTTTACGCAATAGCCTCCCACGTTCTAGACGAGAGACATTGAACATCTACCAAAACGTTGGCTGGGTATGATGGACCATAATGAACATTAGATTACTTACTGAAAT</canonical>
            <polymorphic>TTACTGTATCCCTCTATGAAAATCAAAACCTAGATTTGTTCGAAAACTCCCGCCAGCCGACTTGGGTATCTCGAAGAAAACAGACGCCGCTGTCTCCAAGAATGGAGCATCGAAACTCAAGACAAAGCAAGTGAAACCGTCTGGAGAAAAAGGGTCGAAAGTAAAAAAAACCAGGAGCAAACATGTGAACACTGAGGACGTTCTTCGAAAAAATCAGATGAAAGTTCAGGTCAGTAGTTTTTCTTTAGAAAAAGGAAGCTCGACAAACCGTTTAGTGAATAAGTACCCACGGTGAGTTTTTCACTACCGCTGCTTCAACTTTGGAATTTTTTTCTCGAATTCTAGTCCATAACTTTTTTTCTGTTCCATAAATCTTTAGTAAATTTTATGAAGAATATATAGCAAAAAAATGAATCAGATTTTTTTGTCCGTTGTACTTTAAAACGTCGCAGACTGTTTCGCATTCGGTAGTGAAAAACTCACCGTGAGTACCAACCACRTTTGAGTAATTACAAAAATAGTCCAAAATAACTGTCGATTTGAACTTTTCAGAGTTTGTTGAAAAACTTTTATTCCGGATTTTCAGCATACTTAACTGTAAGATTTCTTTGCCTTATTTTTGAACTTCCGCGACTAACAATGCTAAAATATTAGGTCGTCTCAAAAGTAATCTGTATTTTTTAGGAATGCATTTCGCCCATGTTCGCGGGTCGATTTTCGTTTTCTTTTTTGTTTTAATGATGTTCATCTTTTGTTCATTAAAACATGCCAGTTTGTTTCAAAAAATCTCAGTTCATAGCCTCGCCAACGAAATTTATTATGCTCGCTTAAGAATGGTTAACAGGGTAAGCGCTTCGATGGAAGATCTGACCTCAAGTTGTACCTAGGTGCCTTCTTTACGCAATAGCCTCCCACGTTCTAGACGAGAGACATTGAACATCTACCAAAACGTTGGCTGGGTATGATGGACCATAATGAACATTAGATTACTTACTGAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>416 246 198 54 51 35</canonical_bands>
                <polymorphic_bands>470 246 198 51 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACAAACCGTTTAGTGAATAAGT</pcr_primer_p1>
		<pcr_primer_p2>ACAAACTCTGAAAAGTTCAAATC</pcr_primer_p2>
		<pcr_amplicon_size>298</pcr_amplicon_size>
		<canonical_amplicon>GACAAACCGTTTAGTGAATAAGTACCCACGGTGAGTTTTTCACTACCGCTGCTTCAACTTTGGAATTTTTTTCTCGAATTCTAGTCCATAACTTTTTTTCTGTTCCATAAATCTTTAGTAAATTTTATGAAGAATATATAGCAAAAAAATGAATCAGATTTTTTTGTCCGTTGTACTTTAAAACGTCGCAGACTGTTTCGCATTCGGTAGTGAAAAACTCACCGTGAGTACCAACCACGTTTGAGTAATTACAAAAATAGTCCAAAATAACTGTCGATTTGAACTTTTCAGAGTTTGT</canonical_amplicon>
		<polymorphic_amplicon>GACAAACCGTTTAGTGAATAAGTACCCACGGTGAGTTTTTCACTACCGCTGCTTCAACTTTGGAATTTTTTTCTCGAATTCTAGTCCATAACTTTTTTTCTGTTCCATAAATCTTTAGTAAATTTTATGAAGAATATATAGCAAAAAAATGAATCAGATTTTTTTGTCCGTTGTACTTTAAAACGTCGCAGACTGTTTCGCATTCGGTAGTGAAAAACTCACCGTGAGTACCAACCACRTTTGAGTAATTACAAAAATAGTCCAAAATAACTGTCGATTTGAACTTTTCAGAGTTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27329</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>138362</contig_pos>
        <strand></strand>
        <context>ccgcgactaa[C/A]aatgctaaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATACTTAACTGTAAGATTTCTTTGCCTTATTTTTGAACTTCCGCGACTAA</left_flank>
        <right_flank>AATGCTAAAATATTAGGTCGTCTCAAAAGTAATCTGTATTTTTTAGGAAT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTGGAGAAAAAGGGTCGAAAGTAAAAAAAACCAGGAGCAAACATGTGAACACTGAGGACGTTCTTCGAAAAAATCAGATGAAAGTTCAGGTCAGTAGTTTTTCTTTAGAAAAAGGAAGCTCGACAAACCGTTTAGTGAATAAGTACCCACGGTGAGTTTTTCACTACCGCTGCTTCAACTTTGGAATTTTTTTCTCGAATTCTAGTCCATAACTTTTTTTCTGTTCCATAAATCTTTAGTAAATTTTATGAAGAATATATAGCAAAAAAATGAATCAGATTTTTTTGTCCGTTGTACTTTAAAACGTCGCAGACTGTTTCGCATTCGGTAGTGAAAAACTCACCGTGAGTACCAACCACGTTTGAGTAATTACAAAAATAGTCCAAAATAACTGTCGATTTGAACTTTTCAGAGTTTGTTGAAAAACTTTTATTCCGGATTTTCAGCATACTTAACTGTAAGATTTCTTTGCCTTATTTTTGAACTTCCGCGACTAACAATGCTAAAATATTAGGTCGTCTCAAAAGTAATCTGTATTTTTTAGGAATGCATTTCGCCCATGTTCGCGGGTCGATTTTCGTTTTCTTTTTTGTTTTAATGATGTTCATCTTTTGTTCATTAAAACATGCCAGTTTGTTTCAAAAAATCTCAGTTCATAGCCTCGCCAACGAAATTTATTATGCTCGCTTAAGAATGGTTAACAGGGTAAGCGCTTCGATGGAAGATCTGACCTCAAGTTGTACCTAGGTGCCTTCTTTACGCAATAGCCTCCCACGTTCTAGACGAGAGACATTGAACATCTACCAAAACGTTGGCTGGGTATGATGGACCATAATGAACATTAGATTACTTACTGAAATATTGCTAGAGTTGAATAAAGTTTCGTTGAAAAAATTTCAAAAAATACAGATTACTTTTGAGACGACCTAATATGTTTTTAAGAACGATATGTGTTTTTGTTAAATTTTTCTGCCCGTGGAAGGCCTCAAAATTCCGGA</canonical>
            <polymorphic>GTCTGGAGAAAAAGGGTCGAAAGTAAAAAAAACCAGGAGCAAACATGTGAACACTGAGGACGTTCTTCGAAAAAATCAGATGAAAGTTCAGGTCAGTAGTTTTTCTTTAGAAAAAGGAAGCTCGACAAACCGTTTAGTGAATAAGTACCCACGGTGAGTTTTTCACTACCGCTGCTTCAACTTTGGAATTTTTTTCTCGAATTCTAGTCCATAACTTTTTTTCTGTTCCATAAATCTTTAGTAAATTTTATGAAGAATATATAGCAAAAAAATGAATCAGATTTTTTTGTCCGTTGTACTTTAAAACGTCGCAGACTGTTTCGCATTCGGTAGTGAAAAACTCACCGTGAGTACCAACCACGTTTGAGTAATTACAAAAATAGTCCAAAATAACTGTCGATTTGAACTTTTCAGAGTTTGTTGAAAAACTTTTATTCCGGATTTTCAGCATACTTAACTGTAAGATTTCTTTGCCTTATTTTTGAACTTCCGCGACTAAMAATGCTAAAATATTAGGTCGTCTCAAAAGTAATCTGTATTTTTTAGGAATGCATTTCGCCCATGTTCGCGGGTCGATTTTCGTTTTCTTTTTTGTTTTAATGATGTTCATCTTTTGTTCATTAAAACATGCCAGTTTGTTTCAAAAAATCTCAGTTCATAGCCTCGCCAACGAAATTTATTATGCTCGCTTAAGAATGGTTAACAGGGTAAGCGCTTCGATGGAAGATCTGACCTCAAGTTGTACCTAGGTGCCTTCTTTACGCAATAGCCTCCCACGTTCTAGACGAGAGACATTGAACATCTACCAAAACGTTGGCTGGGTATGATGGACCATAATGAACATTAGATTACTTACTGAAATATTGCTAGAGTTGAATAAAGTTTCGTTGAAAAAATTTCAAAAAATACAGATTACTTTTGAGACGACCTAATATGTTTTTAAGAACGATATGTGTTTTTGTTAAATTTTTCTGCCCGTGGAAGGCCTCAAAATTCCGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTGAACTTTTCAGAGTTTGT</pcr_primer_p1>
		<pcr_primer_p2>CTTAGCTTTTTCATCTTCATCTG</pcr_primer_p2>
		<pcr_amplicon_size>805</pcr_amplicon_size>
		<canonical_amplicon>GATTTGAACTTTTCAGAGTTTGTTGAAAAACTTTTATTCCGGATTTTCAGCATACTTAACTGTAAGATTTCTTTGCCTTATTTTTGAACTTCCGCGACTAACAATGCTAAAATATTAGGTCGTC</canonical_amplicon>
		<polymorphic_amplicon>GATTTGAACTTTTCAGAGTTTGTTGAAAAACTTTTATTCCGGATTTTCAGCATACTTAACTGTAAGATTTCTTTGCCTTATTTTTGAACTTCCGCGACTAAMAATGCTAAAATATTAGGTCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27330</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>138380</contig_pos>
        <strand></strand>
        <context>aaatattagg[T/C]cgtctcaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCTTTGCCTTATTTTTGAACTTCCGCGACTAACAATGCTAAAATATTAGG</left_flank>
        <right_flank>CGTCTCAAAAGTAATCTGTATTTTTTAGGAATGCATTTCGCCCATGTTCG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAGTAAAAAAAACCAGGAGCAAACATGTGAACACTGAGGACGTTCTTCGAAAAAATCAGATGAAAGTTCAGGTCAGTAGTTTTTCTTTAGAAAAAGGAAGCTCGACAAACCGTTTAGTGAATAAGTACCCACGGTGAGTTTTTCACTACCGCTGCTTCAACTTTGGAATTTTTTTCTCGAATTCTAGTCCATAACTTTTTTTCTGTTCCATAAATCTTTAGTAAATTTTATGAAGAATATATAGCAAAAAAATGAATCAGATTTTTTTGTCCGTTGTACTTTAAAACGTCGCAGACTGTTTCGCATTCGGTAGTGAAAAACTCACCGTGAGTACCAACCACGTTTGAGTAATTACAAAAATAGTCCAAAATAACTGTCGATTTGAACTTTTCAGAGTTTGTTGAAAAACTTTTATTCCGGATTTTCAGCATACTTAACTGTAAGATTTCTTTGCCTTATTTTTGAACTTCCGCGACTAACAATGCTAAAATATTAGGTCGTCTCAAAAGTAATCTGTATTTTTTAGGAATGCATTTCGCCCATGTTCGCGGGTCGATTTTCGTTTTCTTTTTTGTTTTAATGATGTTCATCTTTTGTTCATTAAAACATGCCAGTTTGTTTCAAAAAATCTCAGTTCATAGCCTCGCCAACGAAATTTATTATGCTCGCTTAAGAATGGTTAACAGGGTAAGCGCTTCGATGGAAGATCTGACCTCAAGTTGTACCTAGGTGCCTTCTTTACGCAATAGCCTCCCACGTTCTAGACGAGAGACATTGAACATCTACCAAAACGTTGGCTGGGTATGATGGACCATAATGAACATTAGATTACTTACTGAAATATTGCTAGAGTTGAATAAAGTTTCGTTGAAAAAATTTCAAAAAATACAGATTACTTTTGAGACGACCTAATATGTTTTTAAGAACGATATGTGTTTTTGTTAAATTTTTCTGCCCGTGGAAGGCCTCAAAATTCCGGATTCCGTATTCCGTAACGG</canonical>
            <polymorphic>GAAAGTAAAAAAAACCAGGAGCAAACATGTGAACACTGAGGACGTTCTTCGAAAAAATCAGATGAAAGTTCAGGTCAGTAGTTTTTCTTTAGAAAAAGGAAGCTCGACAAACCGTTTAGTGAATAAGTACCCACGGTGAGTTTTTCACTACCGCTGCTTCAACTTTGGAATTTTTTTCTCGAATTCTAGTCCATAACTTTTTTTCTGTTCCATAAATCTTTAGTAAATTTTATGAAGAATATATAGCAAAAAAATGAATCAGATTTTTTTGTCCGTTGTACTTTAAAACGTCGCAGACTGTTTCGCATTCGGTAGTGAAAAACTCACCGTGAGTACCAACCACGTTTGAGTAATTACAAAAATAGTCCAAAATAACTGTCGATTTGAACTTTTCAGAGTTTGTTGAAAAACTTTTATTCCGGATTTTCAGCATACTTAACTGTAAGATTTCTTTGCCTTATTTTTGAACTTCCGCGACTAACAATGCTAAAATATTAGGYCGTCTCAAAAGTAATCTGTATTTTTTAGGAATGCATTTCGCCCATGTTCGCGGGTCGATTTTCGTTTTCTTTTTTGTTTTAATGATGTTCATCTTTTGTTCATTAAAACATGCCAGTTTGTTTCAAAAAATCTCAGTTCATAGCCTCGCCAACGAAATTTATTATGCTCGCTTAAGAATGGTTAACAGGGTAAGCGCTTCGATGGAAGATCTGACCTCAAGTTGTACCTAGGTGCCTTCTTTACGCAATAGCCTCCCACGTTCTAGACGAGAGACATTGAACATCTACCAAAACGTTGGCTGGGTATGATGGACCATAATGAACATTAGATTACTTACTGAAATATTGCTAGAGTTGAATAAAGTTTCGTTGAAAAAATTTCAAAAAATACAGATTACTTTTGAGACGACCTAATATGTTTTTAAGAACGATATGTGTTTTTGTTAAATTTTTCTGCCCGTGGAAGGCCTCAAAATTCCGGATTCCGTATTCCGTAACGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTGAACTTTTCAGAGTTTGT</pcr_primer_p1>
		<pcr_primer_p2>CTTAGCTTTTTCATCTTCATCTG</pcr_primer_p2>
		<pcr_amplicon_size>805</pcr_amplicon_size>
		<canonical_amplicon>GATTTGAACTTTTCAGAGTTTGTTGAAAAACTTTTATTCCGGATTTTCAGCATACTTAACTGTAAGATTTCTTTGCCTTATTTTTGAACTTCCGCGACTAACAATGCTAAAATATTAGGTCGTCTCAAAAGTAATCTGTATT</canonical_amplicon>
		<polymorphic_amplicon>GATTTGAACTTTTCAGAGTTTGTTGAAAAACTTTTATTCCGGATTTTCAGCATACTTAACTGTAAGATTTCTTTGCCTTATTTTTGAACTTCCGCGACTAACAATGCTAAAATATTAGGYCGTCTCAAAAGTAATCTGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27331</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>138454</contig_pos>
        <strand></strand>
        <context>gttttctttt[T/G]tgttttaatg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTTAGGAATGCATTTCGCCCATGTTCGCGGGTCGATTTTCGTTTTCTTTT</left_flank>
        <right_flank>TGTTTTAATGATGTTCATCTTTTGTTCATTAAAACATGCCAGTTTGTTTC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGTAGTTTTTCTTTAGAAAAAGGAAGCTCGACAAACCGTTTAGTGAATAAGTACCCACGGTGAGTTTTTCACTACCGCTGCTTCAACTTTGGAATTTTTTTCTCGAATTCTAGTCCATAACTTTTTTTCTGTTCCATAAATCTTTAGTAAATTTTATGAAGAATATATAGCAAAAAAATGAATCAGATTTTTTTGTCCGTTGTACTTTAAAACGTCGCAGACTGTTTCGCATTCGGTAGTGAAAAACTCACCGTGAGTACCAACCACGTTTGAGTAATTACAAAAATAGTCCAAAATAACTGTCGATTTGAACTTTTCAGAGTTTGTTGAAAAACTTTTATTCCGGATTTTCAGCATACTTAACTGTAAGATTTCTTTGCCTTATTTTTGAACTTCCGCGACTAACAATGCTAAAATATTAGGTCGTCTCAAAAGTAATCTGTATTTTTTAGGAATGCATTTCGCCCATGTTCGCGGGTCGATTTTCGTTTTCTTTTTTGTTTTAATGATGTTCATCTTTTGTTCATTAAAACATGCCAGTTTGTTTCAAAAAATCTCAGTTCATAGCCTCGCCAACGAAATTTATTATGCTCGCTTAAGAATGGTTAACAGGGTAAGCGCTTCGATGGAAGATCTGACCTCAAGTTGTACCTAGGTGCCTTCTTTACGCAATAGCCTCCCACGTTCTAGACGAGAGACATTGAACATCTACCAAAACGTTGGCTGGGTATGATGGACCATAATGAACATTAGATTACTTACTGAAATATTGCTAGAGTTGAATAAAGTTTCGTTGAAAAAATTTCAAAAAATACAGATTACTTTTGAGACGACCTAATATGTTTTTAAGAACGATATGTGTTTTTGTTAAATTTTTCTGCCCGTGGAAGGCCTCAAAATTCCGGATTCCGTATTCCGTAACGGATTTTCCGAATTCCGAGCTTTTTTTTCGTTCAGGATTCCGTTTTCCGGATTCCGGATTCTGAGAAAATTGTTTT</canonical>
            <polymorphic>TCAGTAGTTTTTCTTTAGAAAAAGGAAGCTCGACAAACCGTTTAGTGAATAAGTACCCACGGTGAGTTTTTCACTACCGCTGCTTCAACTTTGGAATTTTTTTCTCGAATTCTAGTCCATAACTTTTTTTCTGTTCCATAAATCTTTAGTAAATTTTATGAAGAATATATAGCAAAAAAATGAATCAGATTTTTTTGTCCGTTGTACTTTAAAACGTCGCAGACTGTTTCGCATTCGGTAGTGAAAAACTCACCGTGAGTACCAACCACGTTTGAGTAATTACAAAAATAGTCCAAAATAACTGTCGATTTGAACTTTTCAGAGTTTGTTGAAAAACTTTTATTCCGGATTTTCAGCATACTTAACTGTAAGATTTCTTTGCCTTATTTTTGAACTTCCGCGACTAACAATGCTAAAATATTAGGTCGTCTCAAAAGTAATCTGTATTTTTTAGGAATGCATTTCGCCCATGTTCGCGGGTCGATTTTCGTTTTCTTTTKTGTTTTAATGATGTTCATCTTTTGTTCATTAAAACATGCCAGTTTGTTTCAAAAAATCTCAGTTCATAGCCTCGCCAACGAAATTTATTATGCTCGCTTAAGAATGGTTAACAGGGTAAGCGCTTCGATGGAAGATCTGACCTCAAGTTGTACCTAGGTGCCTTCTTTACGCAATAGCCTCCCACGTTCTAGACGAGAGACATTGAACATCTACCAAAACGTTGGCTGGGTATGATGGACCATAATGAACATTAGATTACTTACTGAAATATTGCTAGAGTTGAATAAAGTTTCGTTGAAAAAATTTCAAAAAATACAGATTACTTTTGAGACGACCTAATATGTTTTTAAGAACGATATGTGTTTTTGTTAAATTTTTCTGCCCGTGGAAGGCCTCAAAATTCCGGATTCCGTATTCCGTAACGGATTTTCCGAATTCCGAGCTTTTTTTTCGTTCAGGATTCCGTTTTCCGGATTCCGGATTCTGAGAAAATTGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTGAACTTTTCAGAGTTTGT</pcr_primer_p1>
		<pcr_primer_p2>CTTAGCTTTTTCATCTTCATCTG</pcr_primer_p2>
		<pcr_amplicon_size>805</pcr_amplicon_size>
		<canonical_amplicon>GATTTGAACTTTTCAGAGTTTGTTGAAAAACTTTTATTCCGGATTTTCAGCATACTTAACTGTAAGATTTCTTTGCCTTATTTTTGAACTTCCGCGACTAACAATGCTAAAATATTAGGTCGTCTCAAAAGTAATCTGTATTTTTTAGGAATGCATTTCGCCCATGTTCGCGGGTCGATTTTCGTTTTCTTTTTTGTTTTAATGATGTTCATCTTT</canonical_amplicon>
		<polymorphic_amplicon>GATTTGAACTTTTCAGAGTTTGTTGAAAAACTTTTATTCCGGATTTTCAGCATACTTAACTGTAAGATTTCTTTGCCTTATTTTTGAACTTCCGCGACTAACAATGCTAAAATATTAGGTCGTCTCAAAAGTAATCTGTATTTTTTAGGAATGCATTTCGCCCATGTTCGCGGGTCGATTTTCGTTTTCTTTTKTGTTTTAATGATGTTCATCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27332</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>138478</contig_pos>
        <strand></strand>
        <context>ttcatctttt[G/C]ttcattaaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TCGCGGGTCGATTTTCGTTTTCTTTTTTGTTTTAATGATGTTCATCTTTT</left_flank>
        <right_flank>TTCATTAAAACATGCCAGTTTGTTTCAAAAAATCTCAGTTCATAGCCTCG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGCTCGACAAACCGTTTAGTGAATAAGTACCCACGGTGAGTTTTTCACTACCGCTGCTTCAACTTTGGAATTTTTTTCTCGAATTCTAGTCCATAACTTTTTTTCTGTTCCATAAATCTTTAGTAAATTTTATGAAGAATATATAGCAAAAAAATGAATCAGATTTTTTTGTCCGTTGTACTTTAAAACGTCGCAGACTGTTTCGCATTCGGTAGTGAAAAACTCACCGTGAGTACCAACCACGTTTGAGTAATTACAAAAATAGTCCAAAATAACTGTCGATTTGAACTTTTCAGAGTTTGTTGAAAAACTTTTATTCCGGATTTTCAGCATACTTAACTGTAAGATTTCTTTGCCTTATTTTTGAACTTCCGCGACTAACAATGCTAAAATATTAGGTCGTCTCAAAAGTAATCTGTATTTTTTAGGAATGCATTTCGCCCATGTTCGCGGGTCGATTTTCGTTTTCTTTTTTGTTTTAATGATGTTCATCTTTTGTTCATTAAAACATGCCAGTTTGTTTCAAAAAATCTCAGTTCATAGCCTCGCCAACGAAATTTATTATGCTCGCTTAAGAATGGTTAACAGGGTAAGCGCTTCGATGGAAGATCTGACCTCAAGTTGTACCTAGGTGCCTTCTTTACGCAATAGCCTCCCACGTTCTAGACGAGAGACATTGAACATCTACCAAAACGTTGGCTGGGTATGATGGACCATAATGAACATTAGATTACTTACTGAAATATTGCTAGAGTTGAATAAAGTTTCGTTGAAAAAATTTCAAAAAATACAGATTACTTTTGAGACGACCTAATATGTTTTTAAGAACGATATGTGTTTTTGTTAAATTTTTCTGCCCGTGGAAGGCCTCAAAATTCCGGATTCCGTATTCCGTAACGGATTTTCCGAATTCCGAGCTTTTTTTTCGTTCAGGATTCCGTTTTCCGGATTCCGGATTCTGAGAAAATTGTTTTATTTCGGATGCCCTATTCCGCTTC</canonical>
            <polymorphic>GAAGCTCGACAAACCGTTTAGTGAATAAGTACCCACGGTGAGTTTTTCACTACCGCTGCTTCAACTTTGGAATTTTTTTCTCGAATTCTAGTCCATAACTTTTTTTCTGTTCCATAAATCTTTAGTAAATTTTATGAAGAATATATAGCAAAAAAATGAATCAGATTTTTTTGTCCGTTGTACTTTAAAACGTCGCAGACTGTTTCGCATTCGGTAGTGAAAAACTCACCGTGAGTACCAACCACGTTTGAGTAATTACAAAAATAGTCCAAAATAACTGTCGATTTGAACTTTTCAGAGTTTGTTGAAAAACTTTTATTCCGGATTTTCAGCATACTTAACTGTAAGATTTCTTTGCCTTATTTTTGAACTTCCGCGACTAACAATGCTAAAATATTAGGTCGTCTCAAAAGTAATCTGTATTTTTTAGGAATGCATTTCGCCCATGTTCGCGGGTCGATTTTCGTTTTCTTTTTTGTTTTAATGATGTTCATCTTTTSTTCATTAAAACATGCCAGTTTGTTTCAAAAAATCTCAGTTCATAGCCTCGCCAACGAAATTTATTATGCTCGCTTAAGAATGGTTAACAGGGTAAGCGCTTCGATGGAAGATCTGACCTCAAGTTGTACCTAGGTGCCTTCTTTACGCAATAGCCTCCCACGTTCTAGACGAGAGACATTGAACATCTACCAAAACGTTGGCTGGGTATGATGGACCATAATGAACATTAGATTACTTACTGAAATATTGCTAGAGTTGAATAAAGTTTCGTTGAAAAAATTTCAAAAAATACAGATTACTTTTGAGACGACCTAATATGTTTTTAAGAACGATATGTGTTTTTGTTAAATTTTTCTGCCCGTGGAAGGCCTCAAAATTCCGGATTCCGTATTCCGTAACGGATTTTCCGAATTCCGAGCTTTTTTTTCGTTCAGGATTCCGTTTTCCGGATTCCGGATTCTGAGAAAATTGTTTTATTTCGGATGCCCTATTCCGCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTGAACTTTTCAGAGTTTGT</pcr_primer_p1>
		<pcr_primer_p2>CTTAGCTTTTTCATCTTCATCTG</pcr_primer_p2>
		<pcr_amplicon_size>805</pcr_amplicon_size>
		<canonical_amplicon>GATTTGAACTTTTCAGAGTTTGTTGAAAAACTTTTATTCCGGATTTTCAGCATACTTAACTGTAAGATTTCTTTGCCTTATTTTTGAACTTCCGCGACTAACAATGCTAAAATATTAGGTCGTCTCAAAAGTAATCTGTATTTTTTAGGAATGCATTTCGCCCATGTTCGCGGGTCGATTTTCGTTTTCTTTTTTGTTTTAATGATGTTCATCTTTTGTTCATTAAAACATGCCAGTTTG</canonical_amplicon>
		<polymorphic_amplicon>GATTTGAACTTTTCAGAGTTTGTTGAAAAACTTTTATTCCGGATTTTCAGCATACTTAACTGTAAGATTTCTTTGCCTTATTTTTGAACTTCCGCGACTAACAATGCTAAAATATTAGGTCGTCTCAAAAGTAATCTGTATTTTTTAGGAATGCATTTCGCCCATGTTCGCGGGTCGATTTTCGTTTTCTTTTTTGTTTTAATGATGTTCATCTTTTSTTCATTAAAACATGCCAGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27333</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>139128</contig_pos>
        <strand>+</strand>
        <context>GAAGATGAGT[A/T]TGCTTTTCGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGCTGATAACAGTCAACGGACTGCAGAAGAGAAGCCGGACGAAGATGAGT</left_flank>
        <right_flank>TGCTTTTCGGATCCCTCGTCCACATACGGATTTCCGTGGAACCCATCAGT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGCCTCCCACGTTCTAGACGAGAGACATTGAACATCTACCAAAACGTTGGCTGGGTATGATGGACCATAATGAACATTAGATTACTTACTGAAATATTGCTAGAGTTGAATAAAGTTTCGTTGAAAAAATTTCAAAAAATACAGATTACTTTTGAGACGACCTAATATGTTTTTAAGAACGATATGTGTTTTTGTTAAATTTTTCTGCCCGTGGAAGGCCTCAAAATTCCGGATTCCGTATTCCGTAACGGATTTTCCGAATTCCGAGCTTTTTTTTCGTTCAGGATTCCGTTTTCCGGATTCCGGATTCTGAGAAAATTGTTTTATTTCGGATGCCCTATTCCGCTTCTCAAAAAAGTCATTCCGGACATCTCTGGTTTTTGCAAGAAAAGAAAGGTCGATAATATTATTTTCAGATGAAGATGAAAAAGCTAAGAGGACCGAAGGCAGCTGATAACAGTCAACGGACTGCAGAAGAGAAGCCGGACGAAGATGAGTATGCTTTTCGGATCCCTCGTCCACATACGGATTTCCGTGGAACCCATCAGTACGCTTCACCAAATGCTCACTTACAGAAAGAACTAGTAAGCTTCTTTTAGCCAGATTCACATGTCTAGAAGATGTTTTTAGGGTCGCCACGATGATATCTGGTCGTTGATGTATATGGTTGCCGAGTTTTTTGTCGAACTTCCATGGACTAACAATGAGGATCTTCCGGTGGATGAACTCAAAGATCAGTCATCACTTCTTCGTTTATTCATTGACGGTTAGGCCTCTTTTTGTTTTGAATTTCTTCAATTGTTATAATAATTTTAGAAAAGAATCCCAATCGTCTCACACAAGAAATGCGTCGCCAACTGAACGAAATTGACAAAATGCTCAAATCGATGAACTATTATACTCATCCGAATTACGAACTGGTCTATCAGTTCTTGAAGGATTCAATGGATAAATCCAAAGTCTCTTGGGATTCGCCTTTTGACTGGGAACTATCGGGGC</canonical>
            <polymorphic>TAGCCTCCCACGTTCTAGACGAGAGACATTGAACATCTACCAAAACGTTGGCTGGGTATGATGGACCATAATGAACATTAGATTACTTACTGAAATATTGCTAGAGTTGAATAAAGTTTCGTTGAAAAAATTTCAAAAAATACAGATTACTTTTGAGACGACCTAATATGTTTTTAAGAACGATATGTGTTTTTGTTAAATTTTTCTGCCCGTGGAAGGCCTCAAAATTCCGGATTCCGTATTCCGTAACGGATTTTCCGAATTCCGAGCTTTTTTTTCGTTCAGGATTCCGTTTTCCGGATTCCGGATTCTGAGAAAATTGTTTTATTTCGGATGCCCTATTCCGCTTCTCAAAAAAGTCATTCCGGACATCTCTGGTTTTTGCAAGAAAAGAAAGGTCGATAATATTATTTTCAGATGAAGATGAAAAAGCTAAGAGGACCGAAGGCAGCTGATAACAGTCAACGGACTGCAGAAGAGAAGCCGGACGAAGATGAGTWTGCTTTTCGGATCCCTCGTCCACATACGGATTTCCGTGGAACCCATCAGTACGCTTCACCAAATGCTCACTTACAGAAAGAACTAGTAAGCTTCTTTTAGCCAGATTCACATGTCTAGAAGATGTTTTTAGGGTCGCCACGATGATATCTGGTCGTTGATGTATATGGTTGCCGAGTTTTTTGTCGAACTTCCATGGACTAACAATGAGGATCTTCCGGTGGATGAACTCAAAGATCAGTCATCACTTCTTCGTTTATTCATTGACGGTTAGGCCTCTTTTTGTTTTGAATTTCTTCAATTGTTATAATAATTTTAGAAAAGAATCCCAATCGTCTCACACAAGAAATGCGTCGCCAACTGAACGAAATTGACAAAATGCTCAAATCGATGAACTATTATACTCATCCGAATTACGAACTGGTCTATCAGTTCTTGAAGGATTCAATGGATAAATCCAAAGTCTCTTGGGATTCGCCTTTTGACTGGGAACTATCGGGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGATGAAAAAGCTAAGAGGAC</pcr_primer_p1>
		<pcr_primer_p2>ACCATATACATCAACGACCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGATGAAAAAGCTAAGAGGACCGAAGGCAGCTGATAACAGTCAACGGACTGCAGAAGAGAAGCCGGACGAAGATGAGTATGCTTTTCGGATCCCTCGTCCACATACGGATTTCCGTGGAACCCATCAGTACGCTTCACCAAATGCTCACTTACAGAAAGAACTAGTAAGCTTCTTTTAGCCAGATTCACATGTCTAGAAGATGTTTTTAGGGTCGCCACGATGATATCTGGTCGTTGATGTATATGGT</canonical_amplicon>
		<polymorphic_amplicon>GAAGATGAAAAAGCTAAGAGGACCGAAGGCAGCTGATAACAGTCAACGGACTGCAGAAGAGAAGCCGGACGAAGATGAGTWTGCTTTTCGGATCCCTCGTCCACATACGGATTTCCGTGGAACCCATCAGTACGCTTCACCAAATGCTCACTTACAGAAAGAACTAGTAAGCTTCTTTTAGCCAGATTCACATGTCTAGAAGATGTTTTTAGGGTCGCCACGATGATATCTGGTCGTTGATGTATATGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27334</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>139219</contig_pos>
        <strand>+</strand>
        <context>AACTAGTAAG[A/C]TTCTTTTMGC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACCCATCAGTACGCTTCACCAAATGCTCACTTACAGAAAGAACTAGTAAG</left_flank>
        <right_flank>TTCTTTTAGCCAGATTCACATGTCTAGAAGATGTTTTTAGGGTCGCCACG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAATATTGCTAGAGTTGAATAAAGTTTCGTTGAAAAAATTTCAAAAAATACAGATTACTTTTGAGACGACCTAATATGTTTTTAAGAACGATATGTGTTTTTGTTAAATTTTTCTGCCCGTGGAAGGCCTCAAAATTCCGGATTCCGTATTCCGTAACGGATTTTCCGAATTCCGAGCTTTTTTTTCGTTCAGGATTCCGTTTTCCGGATTCCGGATTCTGAGAAAATTGTTTTATTTCGGATGCCCTATTCCGCTTCTCAAAAAAGTCATTCCGGACATCTCTGGTTTTTGCAAGAAAAGAAAGGTCGATAATATTATTTTCAGATGAAGATGAAAAAGCTAAGAGGACCGAAGGCAGCTGATAACAGTCAACGGACTGCAGAAGAGAAGCCGGACGAAGATGAGTATGCTTTTCGGATCCCTCGTCCACATACGGATTTCCGTGGAACCCATCAGTACGCTTCACCAAATGCTCACTTACAGAAAGAACTAGTAAGCTTCTTTTAGCCAGATTCACATGTCTAGAAGATGTTTTTAGGGTCGCCACGATGATATCTGGTCGTTGATGTATATGGTTGCCGAGTTTTTTGTCGAACTTCCATGGACTAACAATGAGGATCTTCCGGTGGATGAACTCAAAGATCAGTCATCACTTCTTCGTTTATTCATTGACGGTTAGGCCTCTTTTTGTTTTGAATTTCTTCAATTGTTATAATAATTTTAGAAAAGAATCCCAATCGTCTCACACAAGAAATGCGTCGCCAACTGAACGAAATTGACAAAATGCTCAAATCGATGAACTATTATACTCATCCGAATTACGAACTGGTCTATCAGTTCTTGAAGGATTCAATGGATAAATCCAAAGTCTCTTGGGATTCGCCTTTTGACTGGGAACTATCGGGGCAATCTGAACTGGAGAAAACGATTAAACAACCCAAGAAGAAAAATTTCTATTGGGAGAATCCAAAATCGTTTTTCAAGGTTATTTGAAACTT</canonical>
            <polymorphic>GAAATATTGCTAGAGTTGAATAAAGTTTCGTTGAAAAAATTTCAAAAAATACAGATTACTTTTGAGACGACCTAATATGTTTTTAAGAACGATATGTGTTTTTGTTAAATTTTTCTGCCCGTGGAAGGCCTCAAAATTCCGGATTCCGTATTCCGTAACGGATTTTCCGAATTCCGAGCTTTTTTTTCGTTCAGGATTCCGTTTTCCGGATTCCGGATTCTGAGAAAATTGTTTTATTTCGGATGCCCTATTCCGCTTCTCAAAAAAGTCATTCCGGACATCTCTGGTTTTTGCAAGAAAAGAAAGGTCGATAATATTATTTTCAGATGAAGATGAAAAAGCTAAGAGGACCGAAGGCAGCTGATAACAGTCAACGGACTGCAGAAGAGAAGCCGGACGAAGATGAGTATGCTTTTCGGATCCCTCGTCCACATACGGATTTCCGTGGAACCCATCAGTACGCTTCACCAAATGCTCACTTACAGAAAGAACTAGTAAGMTTCTTTTAGCCAGATTCACATGTCTAGAAGATGTTTTTAGGGTCGCCACGATGATATCTGGTCGTTGATGTATATGGTTGCCGAGTTTTTTGTCGAACTTCCATGGACTAACAATGAGGATCTTCCGGTGGATGAACTCAAAGATCAGTCATCACTTCTTCGTTTATTCATTGACGGTTAGGCCTCTTTTTGTTTTGAATTTCTTCAATTGTTATAATAATTTTAGAAAAGAATCCCAATCGTCTCACACAAGAAATGCGTCGCCAACTGAACGAAATTGACAAAATGCTCAAATCGATGAACTATTATACTCATCCGAATTACGAACTGGTCTATCAGTTCTTGAAGGATTCAATGGATAAATCCAAAGTCTCTTGGGATTCGCCTTTTGACTGGGAACTATCGGGGCAATCTGAACTGGAGAAAACGATTAAACAACCCAAGAAGAAAAATTTCTATTGGGAGAATCCAAAATCGTTTTTCAAGGTTATTTGAAACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>501 178 163 139 19</canonical_bands>
                <polymorphic_bands>640 178 163 19</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>318 173 163 128 107 50 32 19 10</canonical_bands>
                <polymorphic_bands>318 173 163 128 117 50 32 19</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGATGAAAAAGCTAAGAGGAC</pcr_primer_p1>
		<pcr_primer_p2>ACCATATACATCAACGACCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGATGAAAAAGCTAAGAGGACCGAAGGCAGCTGATAACAGTCAACGGACTGCAGAAGAGAAGCCGGACGAAGATGAGTATGCTTTTCGGATCCCTCGTCCACATACGGATTTCCGTGGAACCCATCAGTACGCTTCACCAAATGCTCACTTACAGAAAGAACTAGTAAGCTTCTTTTAGCCAGATTCACATGTCTAGAAGATGTTTTTAGGGTCGCCACGATGATATCTGGTCGTTGATGTATATGGT</canonical_amplicon>
		<polymorphic_amplicon>GAAGATGAAAAAGCTAAGAGGACCGAAGGCAGCTGATAACAGTCAACGGACTGCAGAAGAGAAGCCGGACGAAGATGAGTATGCTTTTCGGATCCCTCGTCCACATACGGATTTCCGTGGAACCCATCAGTACGCTTCACCAAATGCTCACTTACAGAAAGAACTAGTAAGMTTCTTTTAGCCAGATTCACATGTCTAGAAGATGTTTTTAGGGTCGCCACGATGATATCTGGTCGTTGATGTATATGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27335</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>139227</contig_pos>
        <strand>+</strand>
        <context>AGMTTCTTTT[A/C]GCCAGATTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTACGCTTCACCAAATGCTCACTTACAGAAAGAACTAGTAAGCTTCTTTT</left_flank>
        <right_flank>GCCAGATTCACATGTCTAGAAGATGTTTTTAGGGTCGCCACGATGATATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTAGAGTTGAATAAAGTTTCGTTGAAAAAATTTCAAAAAATACAGATTACTTTTGAGACGACCTAATATGTTTTTAAGAACGATATGTGTTTTTGTTAAATTTTTCTGCCCGTGGAAGGCCTCAAAATTCCGGATTCCGTATTCCGTAACGGATTTTCCGAATTCCGAGCTTTTTTTTCGTTCAGGATTCCGTTTTCCGGATTCCGGATTCTGAGAAAATTGTTTTATTTCGGATGCCCTATTCCGCTTCTCAAAAAAGTCATTCCGGACATCTCTGGTTTTTGCAAGAAAAGAAAGGTCGATAATATTATTTTCAGATGAAGATGAAAAAGCTAAGAGGACCGAAGGCAGCTGATAACAGTCAACGGACTGCAGAAGAGAAGCCGGACGAAGATGAGTATGCTTTTCGGATCCCTCGTCCACATACGGATTTCCGTGGAACCCATCAGTACGCTTCACCAAATGCTCACTTACAGAAAGAACTAGTAAGCTTCTTTTAGCCAGATTCACATGTCTAGAAGATGTTTTTAGGGTCGCCACGATGATATCTGGTCGTTGATGTATATGGTTGCCGAGTTTTTTGTCGAACTTCCATGGACTAACAATGAGGATCTTCCGGTGGATGAACTCAAAGATCAGTCATCACTTCTTCGTTTATTCATTGACGGTTAGGCCTCTTTTTGTTTTGAATTTCTTCAATTGTTATAATAATTTTAGAAAAGAATCCCAATCGTCTCACACAAGAAATGCGTCGCCAACTGAACGAAATTGACAAAATGCTCAAATCGATGAACTATTATACTCATCCGAATTACGAACTGGTCTATCAGTTCTTGAAGGATTCAATGGATAAATCCAAAGTCTCTTGGGATTCGCCTTTTGACTGGGAACTATCGGGGCAATCTGAACTGGAGAAAACGATTAAACAACCCAAGAAGAAAAATTTCTATTGGGAGAATCCAAAATCGTTTTTCAAGGTTATTTGAAACTTTTCAGTTT</canonical>
            <polymorphic>GCTAGAGTTGAATAAAGTTTCGTTGAAAAAATTTCAAAAAATACAGATTACTTTTGAGACGACCTAATATGTTTTTAAGAACGATATGTGTTTTTGTTAAATTTTTCTGCCCGTGGAAGGCCTCAAAATTCCGGATTCCGTATTCCGTAACGGATTTTCCGAATTCCGAGCTTTTTTTTCGTTCAGGATTCCGTTTTCCGGATTCCGGATTCTGAGAAAATTGTTTTATTTCGGATGCCCTATTCCGCTTCTCAAAAAAGTCATTCCGGACATCTCTGGTTTTTGCAAGAAAAGAAAGGTCGATAATATTATTTTCAGATGAAGATGAAAAAGCTAAGAGGACCGAAGGCAGCTGATAACAGTCAACGGACTGCAGAAGAGAAGCCGGACGAAGATGAGTATGCTTTTCGGATCCCTCGTCCACATACGGATTTCCGTGGAACCCATCAGTACGCTTCACCAAATGCTCACTTACAGAAAGAACTAGTAAGCTTCTTTTMGCCAGATTCACATGTCTAGAAGATGTTTTTAGGGTCGCCACGATGATATCTGGTCGTTGATGTATATGGTTGCCGAGTTTTTTGTCGAACTTCCATGGACTAACAATGAGGATCTTCCGGTGGATGAACTCAAAGATCAGTCATCACTTCTTCGTTTATTCATTGACGGTTAGGCCTCTTTTTGTTTTGAATTTCTTCAATTGTTATAATAATTTTAGAAAAGAATCCCAATCGTCTCACACAAGAAATGCGTCGCCAACTGAACGAAATTGACAAAATGCTCAAATCGATGAACTATTATACTCATCCGAATTACGAACTGGTCTATCAGTTCTTGAAGGATTCAATGGATAAATCCAAAGTCTCTTGGGATTCGCCTTTTGACTGGGAACTATCGGGGCAATCTGAACTGGAGAAAACGATTAAACAACCCAAGAAGAAAAATTTCTATTGGGAGAATCCAAAATCGTTTTTCAAGGTTATTTGAAACTTTTCAGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>326 173 163 120 107 50 32 19 10</canonical_bands>
                <polymorphic_bands>326 183 163 120 107 50 32 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGATGAAAAAGCTAAGAGGAC</pcr_primer_p1>
		<pcr_primer_p2>ACCATATACATCAACGACCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGATGAAAAAGCTAAGAGGACCGAAGGCAGCTGATAACAGTCAACGGACTGCAGAAGAGAAGCCGGACGAAGATGAGTATGCTTTTCGGATCCCTCGTCCACATACGGATTTCCGTGGAACCCATCAGTACGCTTCACCAAATGCTCACTTACAGAAAGAACTAGTAAGCTTCTTTTAGCCAGATTCACATGTCTAGAAGATGTTTTTAGGGTCGCCACGATGATATCTGGTCGTTGATGTATATGGT</canonical_amplicon>
		<polymorphic_amplicon>GAAGATGAAAAAGCTAAGAGGACCGAAGGCAGCTGATAACAGTCAACGGACTGCAGAAGAGAAGCCGGACGAAGATGAGTATGCTTTTCGGATCCCTCGTCCACATACGGATTTCCGTGGAACCCATCAGTACGCTTCACCAAATGCTCACTTACAGAAAGAACTAGTAAGCTTCTTTTMGCCAGATTCACATGTCTAGAAGATGTTTTTAGGGTCGCCACGATGATATCTGGTCGTTGATGTATATGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27336</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>139544</contig_pos>
        <strand>+</strand>
        <context>TCCGAATTAC[A/G]AACTGGTCTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTGACAAAATGCTCAAATCGATGAACTATTATACTCATCCGAATTAC</left_flank>
        <right_flank>AACTGGTCTATCAGTTCTTGAAGGATTCAATGGATAAATCCAAAGTCTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGAAGATGAAAAAGCTAAGAGGACCGAAGGCAGCTGATAACAGTCAACGGACTGCAGAAGAGAAGCCGGACGAAGATGAGTATGCTTTTCGGATCCCTCGTCCACATACGGATTTCCGTGGAACCCATCAGTACGCTTCACCAAATGCTCACTTACAGAAAGAACTAGTAAGCTTCTTTTAGCCAGATTCACATGTCTAGAAGATGTTTTTAGGGTCGCCACGATGATATCTGGTCGTTGATGTATATGGTTGCCGAGTTTTTTGTCGAACTTCCATGGACTAACAATGAGGATCTTCCGGTGGATGAACTCAAAGATCAGTCATCACTTCTTCGTTTATTCATTGACGGTTAGGCCTCTTTTTGTTTTGAATTTCTTCAATTGTTATAATAATTTTAGAAAAGAATCCCAATCGTCTCACACAAGAAATGCGTCGCCAACTGAACGAAATTGACAAAATGCTCAAATCGATGAACTATTATACTCATCCGAATTACGAACTGGTCTATCAGTTCTTGAAGGATTCAATGGATAAATCCAAAGTCTCTTGGGATTCGCCTTTTGACTGGGAACTATCGGGGCAATCTGAACTGGAGAAAACGATTAAACAACCCAAGAAGAAAAATTTCTATTGGGAGAATCCAAAATCGTTTTTCAAGGTTATTTGAAACTTTTCAGTTTGACTTTAAAAAATGAAAATTTTAGAATAGTCGCTGGGTTGAACTGAAAATGCCATCTCTTTCGCCACCGGTCTCATCTAAAAACTCGTCAGCGTCAAAAGCAAGATCTGTGAGTGGATACAAGAAAGCGGACTACAAAGCACGTGGAAGAGGTCCGATGAGTAAGGAAGACTCGGCAGATGGCGAGGATGTGTTGGCAAAAGCACCTACTCCGGCACAGAAATCGTCAAGGAAAGAGCCAGATGTGATTTCTGTGGAATCAAAGAAGCAAATTTAAACCTATGATTATAACTTATGAATAAATATGTGTGTTGCTTC</canonical>
            <polymorphic>GATGAAGATGAAAAAGCTAAGAGGACCGAAGGCAGCTGATAACAGTCAACGGACTGCAGAAGAGAAGCCGGACGAAGATGAGTATGCTTTTCGGATCCCTCGTCCACATACGGATTTCCGTGGAACCCATCAGTACGCTTCACCAAATGCTCACTTACAGAAAGAACTAGTAAGCTTCTTTTAGCCAGATTCACATGTCTAGAAGATGTTTTTAGGGTCGCCACGATGATATCTGGTCGTTGATGTATATGGTTGCCGAGTTTTTTGTCGAACTTCCATGGACTAACAATGAGGATCTTCCGGTGGATGAACTCAAAGATCAGTCATCACTTCTTCGTTTATTCATTGACGGTTAGGCCTCTTTTTGTTTTGAATTTCTTCAATTGTTATAATAATTTTAGAAAAGAATCCCAATCGTCTCACACAAGAAATGCGTCGCCAACTGAACGAAATTGACAAAATGCTCAAATCGATGAACTATTATACTCATCCGAATTACRAACTGGTCTATCAGTTCTTGAAGGATTCAATGGATAAATCCAAAGTCTCTTGGGATTCGCCTTTTGACTGGGAACTATCGGGGCAATCTGAACTGGAGAAAACGATTAAACAACCCAAGAAGAAAAATTTCTATTGGGAGAATCCAAAATCGTTTTTCAAGGTTATTTGAAACTTTTCAGTTTGACTTTAAAAAATGAAAATTTTAGAATAGTCGCTGGGTTGAACTGAAAATGCCATCTCTTTCGCCACCGGTCTCATCTAAAAACTCGTCAGCGTCAAAAGCAAGATCTGTGAGTGGATACAAGAAAGCGGACTACAAAGCACGTGGAAGAGGTCCGATGAGTAAGGAAGACTCGGCAGATGGCGAGGATGTGTTGGCAAAAGCACCTACTCCGGCACAGAAATCGTCAAGGAAAGAGCCAGATGTGATTTCTGTGGAATCAAAGAAGCAAATTTAAACCTATGATTATAACTTATGAATAAATATGTGTGTTGCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTGAACGAAATTGACAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTCAAACTGAAAAGTTTCAAATAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AACTGAACGAAATTGACAAAATGCTCAAATCGATGAACTATTATACTCATCCGAATTACGAACTGGTCTATCAGTTCTTGAAGGATTCAATGGATAAATCCAAAGTCTCTTGGGATTCGCCTTTTGACTGGGAACTATCGGGGCAATCTGAACTGGAGAAAACGATTAAACAACCCAAGAAGAAAAATTTCTATTGGGAGAATCCAAAATCGTTTTTCAAGGTTATTTGAAACTTTTCAGTTTGAC</canonical_amplicon>
		<polymorphic_amplicon>AACTGAACGAAATTGACAAAATGCTCAAATCGATGAACTATTATACTCATCCGAATTACRAACTGGTCTATCAGTTCTTGAAGGATTCAATGGATAAATCCAAAGTCTCTTGGGATTCGCCTTTTGACTGGGAACTATCGGGGCAATCTGAACTGGAGAAAACGATTAAACAACCCAAGAAGAAAAATTTCTATTGGGAGAATCCAAAATCGTTTTTCAAGGTTATTTGAAACTTTTCAGTTTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27337</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>139633</contig_pos>
        <strand>+</strand>
        <context>CGGGGCAATC[G/T]GAACTGGAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCCAAAGTCTCTTGGGATTCGCCTTTTGACTGGGAACTATCGGGGCAATC</left_flank>
        <right_flank>GAACTGGAGAAAACGATTAAACAACCCAAGAAGAAAAATTTCTATTGGGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGGATCCCTCGTCCACATACGGATTTCCGTGGAACCCATCAGTACGCTTCACCAAATGCTCACTTACAGAAAGAACTAGTAAGCTTCTTTTAGCCAGATTCACATGTCTAGAAGATGTTTTTAGGGTCGCCACGATGATATCTGGTCGTTGATGTATATGGTTGCCGAGTTTTTTGTCGAACTTCCATGGACTAACAATGAGGATCTTCCGGTGGATGAACTCAAAGATCAGTCATCACTTCTTCGTTTATTCATTGACGGTTAGGCCTCTTTTTGTTTTGAATTTCTTCAATTGTTATAATAATTTTAGAAAAGAATCCCAATCGTCTCACACAAGAAATGCGTCGCCAACTGAACGAAATTGACAAAATGCTCAAATCGATGAACTATTATACTCATCCGAATTACGAACTGGTCTATCAGTTCTTGAAGGATTCAATGGATAAATCCAAAGTCTCTTGGGATTCGCCTTTTGACTGGGAACTATCGGGGCAATCTGAACTGGAGAAAACGATTAAACAACCCAAGAAGAAAAATTTCTATTGGGAGAATCCAAAATCGTTTTTCAAGGTTATTTGAAACTTTTCAGTTTGACTTTAAAAAATGAAAATTTTAGAATAGTCGCTGGGTTGAACTGAAAATGCCATCTCTTTCGCCACCGGTCTCATCTAAAAACTCGTCAGCGTCAAAAGCAAGATCTGTGAGTGGATACAAGAAAGCGGACTACAAAGCACGTGGAAGAGGTCCGATGAGTAAGGAAGACTCGGCAGATGGCGAGGATGTGTTGGCAAAAGCACCTACTCCGGCACAGAAATCGTCAAGGAAAGAGCCAGATGTGATTTCTGTGGAATCAAAGAAGCAAATTTAAACCTATGATTATAACTTATGAATAAATATGTGTGTTGCTTCTGTTGACTGTGCAGGGGGATAAAAACGGGTATATTTTCAGCATACTTGCGAACGGGCCCAAAGCGGGCCGTGGCGGGCCCTGTCATAGT</canonical>
            <polymorphic>TTCGGATCCCTCGTCCACATACGGATTTCCGTGGAACCCATCAGTACGCTTCACCAAATGCTCACTTACAGAAAGAACTAGTAAGCTTCTTTTAGCCAGATTCACATGTCTAGAAGATGTTTTTAGGGTCGCCACGATGATATCTGGTCGTTGATGTATATGGTTGCCGAGTTTTTTGTCGAACTTCCATGGACTAACAATGAGGATCTTCCGGTGGATGAACTCAAAGATCAGTCATCACTTCTTCGTTTATTCATTGACGGTTAGGCCTCTTTTTGTTTTGAATTTCTTCAATTGTTATAATAATTTTAGAAAAGAATCCCAATCGTCTCACACAAGAAATGCGTCGCCAACTGAACGAAATTGACAAAATGCTCAAATCGATGAACTATTATACTCATCCGAATTACGAACTGGTCTATCAGTTCTTGAAGGATTCAATGGATAAATCCAAAGTCTCTTGGGATTCGCCTTTTGACTGGGAACTATCGGGGCAATCKGAACTGGAGAAAACGATTAAACAACCCAAGAAGAAAAATTTCTATTGGGAGAATCCAAAATCGTTTTTCAAGGTTATTTGAAACTTTTCAGTTTGACTTTAAAAAATGAAAATTTTAGAATAGTCGCTGGGTTGAACTGAAAATGCCATCTCTTTCGCCACCGGTCTCATCTAAAAACTCGTCAGCGTCAAAAGCAAGATCTGTGAGTGGATACAAGAAAGCGGACTACAAAGCACGTGGAAGAGGTCCGATGAGTAAGGAAGACTCGGCAGATGGCGAGGATGTGTTGGCAAAAGCACCTACTCCGGCACAGAAATCGTCAAGGAAAGAGCCAGATGTGATTTCTGTGGAATCAAAGAAGCAAATTTAAACCTATGATTATAACTTATGAATAAATATGTGTGTTGCTTCTGTTGACTGTGCAGGGGGATAAAAACGGGTATATTTTCAGCATACTTGCGAACGGGCCCAAAGCGGGCCGTGGCGGGCCCTGTCATAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCAATGGATAAATCCAAAGTC</pcr_primer_p1>
		<pcr_primer_p2>TGACGAGTTTTTAGATGAGACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTCAATGGATAAATCCAAAGTCTCTTGGGATTCGCCTTTTGACTGGGAACTATCGGGGCAATCTGAACTGGAGAAAACGATTAAACAACCCAAGAAGAAAAATTTCTATTGGGAGAATCCAAAATCGTTTTTCAAGGTTATTTGAAACTTTTCAGTTTGACTTTAAAAAATGAAAATTTTAGAATAGTCGCTGGGTTGAACTGAAAATGCCATCTCTTTCGCCACCGGTCTCATCTAAAAACTCGTCA</canonical_amplicon>
		<polymorphic_amplicon>ATTCAATGGATAAATCCAAAGTCTCTTGGGATTCGCCTTTTGACTGGGAACTATCGGGGCAATCKGAACTGGAGAAAACGATTAAACAACCCAAGAAGAAAAATTTCTATTGGGAGAATCCAAAATCGTTTTTCAAGGTTATTTGAAACTTTTCAGTTTGACTTTAAAAAATGAAAATTTTAGAATAGTCGCTGGGTTGAACTGAAAATGCCATCTCTTTCGCCACCGGTCTCATCTAAAAACTCGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27338</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>139651</contig_pos>
        <strand>+</strand>
        <context>AGAAAACGAT[G/T]AAACAACCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGCCTTTTGACTGGGAACTATCGGGGCAATCTGAACTGGAGAAAACGAT</left_flank>
        <right_flank>AAACAACCCAAGAAGAAAAATTTCTATTGGGAGAATCCAAAATCGTTTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATACGGATTTCCGTGGAACCCATCAGTACGCTTCACCAAATGCTCACTTACAGAAAGAACTAGTAAGCTTCTTTTAGCCAGATTCACATGTCTAGAAGATGTTTTTAGGGTCGCCACGATGATATCTGGTCGTTGATGTATATGGTTGCCGAGTTTTTTGTCGAACTTCCATGGACTAACAATGAGGATCTTCCGGTGGATGAACTCAAAGATCAGTCATCACTTCTTCGTTTATTCATTGACGGTTAGGCCTCTTTTTGTTTTGAATTTCTTCAATTGTTATAATAATTTTAGAAAAGAATCCCAATCGTCTCACACAAGAAATGCGTCGCCAACTGAACGAAATTGACAAAATGCTCAAATCGATGAACTATTATACTCATCCGAATTACGAACTGGTCTATCAGTTCTTGAAGGATTCAATGGATAAATCCAAAGTCTCTTGGGATTCGCCTTTTGACTGGGAACTATCGGGGCAATCTGAACTGGAGAAAACGATTAAACAACCCAAGAAGAAAAATTTCTATTGGGAGAATCCAAAATCGTTTTTCAAGGTTATTTGAAACTTTTCAGTTTGACTTTAAAAAATGAAAATTTTAGAATAGTCGCTGGGTTGAACTGAAAATGCCATCTCTTTCGCCACCGGTCTCATCTAAAAACTCGTCAGCGTCAAAAGCAAGATCTGTGAGTGGATACAAGAAAGCGGACTACAAAGCACGTGGAAGAGGTCCGATGAGTAAGGAAGACTCGGCAGATGGCGAGGATGTGTTGGCAAAAGCACCTACTCCGGCACAGAAATCGTCAAGGAAAGAGCCAGATGTGATTTCTGTGGAATCAAAGAAGCAAATTTAAACCTATGATTATAACTTATGAATAAATATGTGTGTTGCTTCTGTTGACTGTGCAGGGGGATAAAAACGGGTATATTTTCAGCATACTTGCGAACGGGCCCAAAGCGGGCCGTGGCGGGCCCTGTCATAGTTTCTTTTAGGATCAATAT</canonical>
            <polymorphic>ATACGGATTTCCGTGGAACCCATCAGTACGCTTCACCAAATGCTCACTTACAGAAAGAACTAGTAAGCTTCTTTTAGCCAGATTCACATGTCTAGAAGATGTTTTTAGGGTCGCCACGATGATATCTGGTCGTTGATGTATATGGTTGCCGAGTTTTTTGTCGAACTTCCATGGACTAACAATGAGGATCTTCCGGTGGATGAACTCAAAGATCAGTCATCACTTCTTCGTTTATTCATTGACGGTTAGGCCTCTTTTTGTTTTGAATTTCTTCAATTGTTATAATAATTTTAGAAAAGAATCCCAATCGTCTCACACAAGAAATGCGTCGCCAACTGAACGAAATTGACAAAATGCTCAAATCGATGAACTATTATACTCATCCGAATTACGAACTGGTCTATCAGTTCTTGAAGGATTCAATGGATAAATCCAAAGTCTCTTGGGATTCGCCTTTTGACTGGGAACTATCGGGGCAATCTGAACTGGAGAAAACGATKAAACAACCCAAGAAGAAAAATTTCTATTGGGAGAATCCAAAATCGTTTTTCAAGGTTATTTGAAACTTTTCAGTTTGACTTTAAAAAATGAAAATTTTAGAATAGTCGCTGGGTTGAACTGAAAATGCCATCTCTTTCGCCACCGGTCTCATCTAAAAACTCGTCAGCGTCAAAAGCAAGATCTGTGAGTGGATACAAGAAAGCGGACTACAAAGCACGTGGAAGAGGTCCGATGAGTAAGGAAGACTCGGCAGATGGCGAGGATGTGTTGGCAAAAGCACCTACTCCGGCACAGAAATCGTCAAGGAAAGAGCCAGATGTGATTTCTGTGGAATCAAAGAAGCAAATTTAAACCTATGATTATAACTTATGAATAAATATGTGTGTTGCTTCTGTTGACTGTGCAGGGGGATAAAAACGGGTATATTTTCAGCATACTTGCGAACGGGCCCAAAGCGGGCCGTGGCGGGCCCTGTCATAGTTTCTTTTAGGATCAATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>499 268 151 82</canonical_bands>
                <polymorphic_bands>581 268 151</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCAATGGATAAATCCAAAGTC</pcr_primer_p1>
		<pcr_primer_p2>TGACGAGTTTTTAGATGAGACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTCAATGGATAAATCCAAAGTCTCTTGGGATTCGCCTTTTGACTGGGAACTATCGGGGCAATCTGAACTGGAGAAAACGATTAAACAACCCAAGAAGAAAAATTTCTATTGGGAGAATCCAAAATCGTTTTTCAAGGTTATTTGAAACTTTTCAGTTTGACTTTAAAAAATGAAAATTTTAGAATAGTCGCTGGGTTGAACTGAAAATGCCATCTCTTTCGCCACCGGTCTCATCTAAAAACTCGTCA</canonical_amplicon>
		<polymorphic_amplicon>ATTCAATGGATAAATCCAAAGTCTCTTGGGATTCGCCTTTTGACTGGGAACTATCGGGGCAATCTGAACTGGAGAAAACGATKAAACAACCCAAGAAGAAAAATTTCTATTGGGAGAATCCAAAATCGTTTTTCAAGGTTATTTGAAACTTTTCAGTTTGACTTTAAAAAATGAAAATTTTAGAATAGTCGCTGGGTTGAACTGAAAATGCCATCTCTTTCGCCACCGGTCTCATCTAAAAACTCGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27339</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>139669</contig_pos>
        <strand>+</strand>
        <context>CCAAGAAGAA[A/G]AATTTCTATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTATCGGGGCAATCTGAACTGGAGAAAACGATTAAACAACCCAAGAAGAA</left_flank>
        <right_flank>AATTTCTATTGGGAGAATCCAAAATCGTTTTTCAAGGTTATTTGAAACTT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCATCAGTACGCTTCACCAAATGCTCACTTACAGAAAGAACTAGTAAGCTTCTTTTAGCCAGATTCACATGTCTAGAAGATGTTTTTAGGGTCGCCACGATGATATCTGGTCGTTGATGTATATGGTTGCCGAGTTTTTTGTCGAACTTCCATGGACTAACAATGAGGATCTTCCGGTGGATGAACTCAAAGATCAGTCATCACTTCTTCGTTTATTCATTGACGGTTAGGCCTCTTTTTGTTTTGAATTTCTTCAATTGTTATAATAATTTTAGAAAAGAATCCCAATCGTCTCACACAAGAAATGCGTCGCCAACTGAACGAAATTGACAAAATGCTCAAATCGATGAACTATTATACTCATCCGAATTACGAACTGGTCTATCAGTTCTTGAAGGATTCAATGGATAAATCCAAAGTCTCTTGGGATTCGCCTTTTGACTGGGAACTATCGGGGCAATCTGAACTGGAGAAAACGATTAAACAACCCAAGAAGAAAAATTTCTATTGGGAGAATCCAAAATCGTTTTTCAAGGTTATTTGAAACTTTTCAGTTTGACTTTAAAAAATGAAAATTTTAGAATAGTCGCTGGGTTGAACTGAAAATGCCATCTCTTTCGCCACCGGTCTCATCTAAAAACTCGTCAGCGTCAAAAGCAAGATCTGTGAGTGGATACAAGAAAGCGGACTACAAAGCACGTGGAAGAGGTCCGATGAGTAAGGAAGACTCGGCAGATGGCGAGGATGTGTTGGCAAAAGCACCTACTCCGGCACAGAAATCGTCAAGGAAAGAGCCAGATGTGATTTCTGTGGAATCAAAGAAGCAAATTTAAACCTATGATTATAACTTATGAATAAATATGTGTGTTGCTTCTGTTGACTGTGCAGGGGGATAAAAACGGGTATATTTTCAGCATACTTGCGAACGGGCCCAAAGCGGGCCGTGGCGGGCCCTGTCATAGTTTCTTTTAGGATCAATATTTTTTGACTAACTAAATT</canonical>
            <polymorphic>CCCATCAGTACGCTTCACCAAATGCTCACTTACAGAAAGAACTAGTAAGCTTCTTTTAGCCAGATTCACATGTCTAGAAGATGTTTTTAGGGTCGCCACGATGATATCTGGTCGTTGATGTATATGGTTGCCGAGTTTTTTGTCGAACTTCCATGGACTAACAATGAGGATCTTCCGGTGGATGAACTCAAAGATCAGTCATCACTTCTTCGTTTATTCATTGACGGTTAGGCCTCTTTTTGTTTTGAATTTCTTCAATTGTTATAATAATTTTAGAAAAGAATCCCAATCGTCTCACACAAGAAATGCGTCGCCAACTGAACGAAATTGACAAAATGCTCAAATCGATGAACTATTATACTCATCCGAATTACGAACTGGTCTATCAGTTCTTGAAGGATTCAATGGATAAATCCAAAGTCTCTTGGGATTCGCCTTTTGACTGGGAACTATCGGGGCAATCTGAACTGGAGAAAACGATTAAACAACCCAAGAAGAARAATTTCTATTGGGAGAATCCAAAATCGTTTTTCAAGGTTATTTGAAACTTTTCAGTTTGACTTTAAAAAATGAAAATTTTAGAATAGTCGCTGGGTTGAACTGAAAATGCCATCTCTTTCGCCACCGGTCTCATCTAAAAACTCGTCAGCGTCAAAAGCAAGATCTGTGAGTGGATACAAGAAAGCGGACTACAAAGCACGTGGAAGAGGTCCGATGAGTAAGGAAGACTCGGCAGATGGCGAGGATGTGTTGGCAAAAGCACCTACTCCGGCACAGAAATCGTCAAGGAAAGAGCCAGATGTGATTTCTGTGGAATCAAAGAAGCAAATTTAAACCTATGATTATAACTTATGAATAAATATGTGTGTTGCTTCTGTTGACTGTGCAGGGGGATAAAAACGGGTATATTTTCAGCATACTTGCGAACGGGCCCAAAGCGGGCCGTGGCGGGCCCTGTCATAGTTTCTTTTAGGATCAATATTTTTTGACTAACTAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>253 253 247 173 74</canonical_bands>
                <polymorphic_bands>327 253 247 173</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCAATGGATAAATCCAAAGTC</pcr_primer_p1>
		<pcr_primer_p2>TGACGAGTTTTTAGATGAGACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTCAATGGATAAATCCAAAGTCTCTTGGGATTCGCCTTTTGACTGGGAACTATCGGGGCAATCTGAACTGGAGAAAACGATTAAACAACCCAAGAAGAAAAATTTCTATTGGGAGAATCCAAAATCGTTTTTCAAGGTTATTTGAAACTTTTCAGTTTGACTTTAAAAAATGAAAATTTTAGAATAGTCGCTGGGTTGAACTGAAAATGCCATCTCTTTCGCCACCGGTCTCATCTAAAAACTCGTCA</canonical_amplicon>
		<polymorphic_amplicon>ATTCAATGGATAAATCCAAAGTCTCTTGGGATTCGCCTTTTGACTGGGAACTATCGGGGCAATCTGAACTGGAGAAAACGATTAAACAACCCAAGAAGAARAATTTCTATTGGGAGAATCCAAAATCGTTTTTCAAGGTTATTTGAAACTTTTCAGTTTGACTTTAAAAAATGAAAATTTTAGAATAGTCGCTGGGTTGAACTGAAAATGCCATCTCTTTCGCCACCGGTCTCATCTAAAAACTCGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27340</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>152408</contig_pos>
        <strand></strand>
        <context>gtttgtcatt[T/C]ttaattcttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGATTTCTACAAATTTAACAGGATAATTTGATAATTCCTCGTTTGTCATT</left_flank>
        <right_flank>TTAATTCTTTTTCTTAGTCCCCTCATTTGTTGTACTTTGCTTGTTTTTGT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCACACAGAGGATACAAACACCGGAGGTAATTGTTCTAGAAACATGCCAAATGAATGTTACCATTTTCAGGGTCTTTATGGAGATCTTTGGAACGAGAAGAACTGAAGCGGACATACTTTCTATTGTTGGCCACTCAATCCAAAATTATATCAACAGTTATTTCAATCGCCACTCAAAAATGGAAGTGCTCCGAAATCACAAGCTGCGCCAATAACAGTATTTTGATAAAGTGATCAGCTAAATGTCCCACTCTTTAAATGACACAATTAAAAAATTTCAGTTTCAAAATATTCAACGTCTACGATCAGAAAAATTCGACGAATATTTGGGATTCGGAGCTGTCTGGAGCAAAGATATCGACTTGTCATAGCGATATTTAGAAGGATCTCTATAATTCAAAAAAACTACCAGCAAAGACCTCAAAATTCGAAATATAGGCGGAAGCGAAGATTTCTACAAATTTAACAGGATAATTTGATAATTCCTCGTTTGTCATTTTTAATTCTTTTTCTTAGTCCCCTCATTTGTTGTACTTTGCTTGTTTTTGTTGAATAAACCTTTTTATAATCCGAAATTTTTTCAAAAATCAATAAACTTTCAAAAAACAAGCAAATCTAATGAGGAAGCATCCTAATTTAACTAGACGCGAATCTACCTAGGCGGTATGCGAATCTAGCTAGCCGGCTTGCCGATCTAAAGCGGTTGCGTTAGAACATAGAATTAGCTAGTTTAGATTTGGTTAACTTCTAATTAGACGTGAAACGATTGCCCTGAGTCCAAAATTCCGGAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGGAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCGGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGGGTAGAATTTTACTCGAATCTGGTTGGAAAATTTCCCGAAACTGGTTAGAAGCCGATTACCAGAGCTTGATACAAAGAAAAGGGTTGA</canonical>
            <polymorphic>TTCACACAGAGGATACAAACACCGGAGGTAATTGTTCTAGAAACATGCCAAATGAATGTTACCATTTTCAGGGTCTTTATGGAGATCTTTGGAACGAGAAGAACTGAAGCGGACATACTTTCTATTGTTGGCCACTCAATCCAAAATTATATCAACAGTTATTTCAATCGCCACTCAAAAATGGAAGTGCTCCGAAATCACAAGCTGCGCCAATAACAGTATTTTGATAAAGTGATCAGCTAAATGTCCCACTCTTTAAATGACACAATTAAAAAATTTCAGTTTCAAAATATTCAACGTCTACGATCAGAAAAATTCGACGAATATTTGGGATTCGGAGCTGTCTGGAGCAAAGATATCGACTTGTCATAGCGATATTTAGAAGGATCTCTATAATTCAAAAAAACTACCAGCAAAGACCTCAAAATTCGAAATATAGGCGGAAGCGAAGATTTCTACAAATTTAACAGGATAATTTGATAATTCCTCGTTTGTCATTYTTAATTCTTTTTCTTAGTCCCCTCATTTGTTGTACTTTGCTTGTTTTTGTTGAATAAACCTTTTTATAATCCGAAATTTTTTCAAAAATCAATAAACTTTCAAAAAACAAGCAAATCTAATGAGGAAGCATCCTAATTTAACTAGACGCGAATCTACCTAGGCGGTATGCGAATCTAGCTAGCCGGCTTGCCGATCTAAAGCGGTTGCGTTAGAACATAGAATTAGCTAGTTTAGATTTGGTTAACTTCTAATTAGACGTGAAACGATTGCCCTGAGTCCAAAATTCCGGAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGGAAATTAGCTTTCTCGGTCGGATCTGGTCAGAAAATCACCGGATCTGGTCGGAAAATAAAAACTTTCCGAATCTGGGTAGAATTTTACTCGAATCTGGTTGGAAAATTTCCCGAAACTGGTTAGAAGCCGATTACCAGAGCTTGATACAAAGAAAAGGGTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAAGTGATCAGCTAAATGTCC</pcr_primer_p1>
		<pcr_primer_p2>ATCAACCCTTTTCTTTGTATCA</pcr_primer_p2>
		<pcr_amplicon_size>775</pcr_amplicon_size>
		<canonical_amplicon>ATAAAGTGATCAGCTAAATGTCCCACTCTTTAAATGACACAATTAAAAAATTTCAGTTTCAAAATATTCAACGTCTACGATCAGAAAAATTCGACGAATATTTGGGATTCGGAGCTGTCTGGAGCAAAGATATCGACTTGTCATAGCGATATTTAGAAGGATCTCTATAATTCAAAAAAACTACCAGCAAAGACCTCAAAATTCGAAATATAGGCGGAAGCGAAGATTTCTACAAATTTAACAGGATAATTTGATAATTCCTCGTTTGTCATTTTTAATTCTTTTTCTTAGTCCC</canonical_amplicon>
		<polymorphic_amplicon>ATAAAGTGATCAGCTAAATGTCCCACTCTTTAAATGACACAATTAAAAAATTTCAGTTTCAAAATATTCAACGTCTACGATCAGAAAAATTCGACGAATATTTGGGATTCGGAGCTGTCTGGAGCAAAGATATCGACTTGTCATAGCGATATTTAGAAGGATCTCTATAATTCAAAAAAACTACCAGCAAAGACCTCAAAATTCGAAATATAGGCGGAAGCGAAGATTTCTACAAATTTAACAGGATAATTTGATAATTCCTCGTTTGTCATTYTTAATTCTTTTTCTTAGTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27341</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>153719</contig_pos>
        <strand>+</strand>
        <context>ACTTCATACA[C/G]CCAAACTGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAGCATGTTGAATACGGCAGAAAAAACATAGATATTTTCAACTTCATACA</left_flank>
        <right_flank>CCAAACTGTGTTTTTCTTTTTTTTTTTGGTACAAAAATTCGGATTCGTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTTTTAAGCTTGCTTCTCCGTTTCGTCGGCCCATTCACTGCTTCTATATTTATCTGAAAATCCCTTATTTGCATCCATATCAAACGGCTTCTGTTATCAGTATTCGTCCCACCCATTCGTTCAGTGATATCTAATCCAACGTGGCGGTCCTTCCTCGTCAGCTTCTCAAGATCGTCAAGCAATTTATCCCGTTCCCAAAGTTCTCCAATTCTGTTTCAATCAATTCAGAATCTGCTATCTCAAAGATTCAACCGAAGAGACGGCACCAAGGAAAAAGTGACTGGCGATGAAATGGTAAAAGGTAAGCAATTCAAATGGGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGAAGAAGAAGAAGAAGCAGCAAGAAAAAAGTCCTGGAAGCCGTTTGAAATTCGATATCTAGAGGTGAAGGAGGAAAGAAAAAATGTATTGAATTTCGAACAGCATGTTGAATACGGCAGAAAAAACATAGATATTTTCAACTTCATACAGCCAAACTGTGTTTTTCTTTTTTTTTTTGGTACAAAAATTCGGATTCGTGGAAGAGAAACACCGGTGGCCGTGGCAGAAGGTCCCACAAAGACCACTACCGTAACCAGGAAAATTATTTAATTTTCCAGTTTTTTCACGTTTTTCGCTGCTTTTCGTCAGAAATGCACGAAAATTGAGAAAAAAAATCTGGAGAACAGAAGTTTTTTAGGTTACTGTAGTTGTCGTTGTGGGACCTTCGGCGCAGACCACCGGCGCTTCTCTTCTACACCTTCGATATTTTGTGTCAGAATAATTTAGCTTTGGAGTATTTTCAATTTTCAGTTTAAAACTTCAAATATTCAAACAACACATAATCAGAAATAGGATTCTGAACCAGAACCTGATTCAAACAAAAAACTTGAAACTACAGTTATTTTTCGGTTATTTTCTCTGACTACCAATTGTGAGAAACATAAATATTTCCAATTCCCTAAACTGGGAGTTTTGAAAAGTTGACTGAA</canonical>
            <polymorphic>CTCTTTTAAGCTTGCTTCTCCGTTTCGTCGGCCCATTCACTGCTTCTATATTTATCTGAAAATCCCTTATTTGCATCCATATCAAACGGCTTCTGTTATCAGTATTCGTCCCACCCATTCGTTCAGTGATATCTAATCCAACGTGGCGGTCCTTCCTCGTCAGCTTCTCAAGATCGTCAAGCAATTTATCCCGTTCCCAAAGTTCTCCAATTCTGTTTCAATCAATTCAGAATCTGCTATCTCAAAGATTCAACCGAAGAGACGGCACCAAGGAAAAAGTGACTGGCGATGAAATGGTAAAAGGTAAGCAATTCAAATGGGAAGAAGAAGAAGAAGAAGAAGAAGAAGACGAAGAAGAAGAAGAAGCAGCAAGAAAAAAGTCCTGGAAGCCGTTTGAAATTCGATATCTAGAGGTGAAGGAGGAAAGAAAAAATGTATTGAATTTCGAACAGCATGTTGAATACGGCAGAAAAAACATAGATATTTTCAACTTCATACASCCAAACTGTGTTTTTCTTTTTTTTTTTGGTACAAAAATTCGGATTCGTGGAAGAGAAACACCGGTGGCCGTGGCAGAAGGTCCCACAAAGACCACTACCGTAACCAGGAAAATTATTTAATTTTCCAGTTTTTTCACGTTTTTCGCTGCTTTTCGTCAGAAATGCACGAAAATTGAGAAAAAAAATCTGGAGAACAGAAGTTTTTTAGGTTACTGTAGTTGTCGTTGTGGGACCTTCGGCGCAGACCACCGGCGCTTCTCTTCTACACCTTCGATATTTTGTGTCAGAATAATTTAGCTTTGGAGTATTTTCAATTTTCAGTTTAAAACTTCAAATATTCAAACAACACATAATCAGAAATAGGATTCTGAACCAGAACCTGATTCAAACAAAAAACTTGAAACTACAGTTATTTTTCGGTTATTTTCTCTGACTACCAATTGTGAGAAACATAAATATTTCCAATTCCCTAAACTGGGAGTTTTGAAAAGTTGACTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>230 226 203 111 74 67 58 21 10</canonical_bands>
                <polymorphic_bands>230 226 203 178 74 58 21 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCGAACAGCATGTTGAATAC</pcr_primer_p1>
		<pcr_primer_p2>TTGAAAATACTCCAAAGCTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>371</pcr_amplicon_size>
		<canonical_amplicon>TTCGAACAGCATGTTGAATACGGCAGAAAAAACATAGATATTTTCAACTTCATACAGCCAAACTGTGTTTTTCTTTTTTTTTTTGGTACAAAAATTCGGATTCGTGGAAGAGAAACACCGGTGGCCGTGGCAGAAGGTCCCACAAAGACCACTACCGTAACCAGGAAAATTATTTAATTTTCCAGTTTTTTCACGTTTTTCGCTGCTTTTCGTCAGAAATGCACGAAAATTGAGAAAAAAAATCTGGAGAACAGAAGTTTTTTAGGTTACTGTAGTTGTCGTTGTGGGACCTTCGGCGCAGACCACCGGCGCTTCTCTTCTACACCTTCGATATTTTGTGTCAGAATAATTTAGCTTTGGAGTATTTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TTCGAACAGCATGTTGAATACGGCAGAAAAAACATAGATATTTTCAACTTCATACASCCAAACTGTGTTTTTCTTTTTTTTTTTGGTACAAAAATTCGGATTCGTGGAAGAGAAACACCGGTGGCCGTGGCAGAAGGTCCCACAAAGACCACTACCGTAACCAGGAAAATTATTTAATTTTCCAGTTTTTTCACGTTTTTCGCTGCTTTTCGTCAGAAATGCACGAAAATTGAGAAAAAAAATCTGGAGAACAGAAGTTTTTTAGGTTACTGTAGTTGTCGTTGTGGGACCTTCGGCGCAGACCACCGGCGCTTCTCTTCTACACCTTCGATATTTTGTGTCAGAATAATTTAGCTTTGGAGTATTTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27342</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>174221</contig_pos>
        <strand>+</strand>
        <context>TTGTGGGGAA[A/G]GTTGAATTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGTGCAACAGTTGGTTGAGATAATGGGGTGATGGCAGGTTGTGGGGAA</left_flank>
        <right_flank>GTTGAATTACTTGTTGATGTGATTGCTGTGTTTCTGTGATTACTTCCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTGCAGCTAACTGTATAGCAAGCATGTTCGCCCGGTCCATTTCGATTCTTCGTTTCTTCTCCTGCCGATCCATCTCCATTTTACGATCGAGTTGTTCTCGCTGTTGTCGCTTTAAGCTCTCTTCTTCCACCGCTCGTCGCTGATTTTCCAACAGTTCTTGTCGTGCTTGTGCGTTTTTAATGGCCATTTGTTCTTGTTGCTGAGCCATAACAGCCGCTTGTCGCTCTTGCGTCTCTTTTGAAAATCCAATTCCTGCACCATGCGCGGCATGACAGACCATATCTGAAATCGTCTGTACCATGTCTGCATAGAGAAAGTTCCGGTATTCAGGCTTTGCTTGCAAAAGCGATGCCATCTCATTGACGTTTCTATCTCTGATTAGCTCACCGAAACGAGCACGAACGGATTCCCCTTCTGTCGGTGATGTTTGCGGGATTTCAGATGCTGATTGTGCAACAGTTGGTTGAGATAATGGGGTGATGGCAGGTTGTGGGGAAGGTTGAATTACTTGTTGATGTGATTGCTGTGTTTCTGTGATTACTTCCAATGGTTTTTGAGGCTGCACAGGAGCTTGAACGAGTTCGTGATTTTTATGATGATCTTCTTGAACTTTCTCATTAGTTGGAATATTTTCAGATTCCATAATCTCCACAGATTTCTCCAATGTATGATGTTCCGGTGAGGATTCATCAATCTCCAGTGGTCTCGCTCCATAATCCTCGTCGCTGTCATCCATATACTTCTCGTCTGCTGCGTTGTTCTCGATCGGCTCTATTGAAGCAATCTCAACGATCTGTTCAATAGGATTCACAATATGTGGGAATTCTCCTTCGATGGTGTCAATACTGCCAACATCGTTATTCTTTTCAGGTTGGGATGTGGACGGTTTGGGAGATATCAATTTATCTATGCTGTAACCTTCGGACGAGATGGTTGATTGAGATGACGTCTTCTCCGCGGTTTCTGGATGAACGGTCTCCTGAAAGTAGGAAAAATGA</canonical>
            <polymorphic>CATTGCAGCTAACTGTATAGCAAGCATGTTCGCCCGGTCCATTTCGATTCTTCGTTTCTTCTCCTGCCGATCCATCTCCATTTTACGATCGAGTTGTTCTCGCTGTTGTCGCTTTAAGCTCTCTTCTTCCACCGCTCGTCGCTGATTTTCCAACAGTTCTTGTCGTGCTTGTGCGTTTTTAATGGCCATTTGTTCTTGTTGCTGAGCCATAACAGCCGCTTGTCGCTCTTGCGTCTCTTTTGAAAATCCAATTCCTGCACCATGCGCGGCATGACAGACCATATCTGAAATCGTCTGTACCATGTCTGCATAGAGAAAGTTCCGGTATTCAGGCTTTGCTTGCAAAAGCGATGCCATCTCATTGACGTTTCTATCTCTGATTAGCTCACCGAAACGAGCACGAACGGATTCCCCTTCTGTCGGTGATGTTTGCGGGATTTCAGATGCTGATTGTGCAACAGTTGGTTGAGATAATGGGGTGATGGCAGGTTGTGGGGAARGTTGAATTACTTGTTGATGTGATTGCTGTGTTTCTGTGATTACTTCCAATGGTTTTTGAGGCTGCACAGGAGCTTGAACGAGTTCGTGATTTTTATGATGATCTTCTTGAACTTTCTCATTAGTTGGAATATTTTCAGATTCCATAATCTCCACAGATTTCTCCAATGTATGATGTTCCGGTGAGGATTCATCAATCTCCAGTGGTCTCGCTCCATAATCCTCGTCGCTGTCATCCATATACTTCTCGTCTGCTGCGTTGTTCTCGATCGGCTCTATTGAAGCAATCTCAACGATCTGTTCAATAGGATTCACAATATGTGGGAATTCTCCTTCGATGGTGTCAATACTGCCAACATCGTTATTCTTTTCAGGTTGGGATGTGGACGGTTTGGGAGATATCAATTTATCTATGCTGTAACCTTCGGACGAGATGGTTGATTGAGATGACGTCTTCTCCGCGGTTTCTGGATGAACGGTCTCCTGAAAGTAGGAAAAATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCTCATTGACGTTTCTATCTC</pcr_primer_p1>
		<pcr_primer_p2>GATCATCATAAAAATCACGAACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATCTCATTGACGTTTCTATCTCTGATTAGCTCACCGAAACGAGCACGAACGGATTCCCCTTCTGTCGGTGATGTTTGCGGGATTTCAGATGCTGATTGTGCAACAGTTGGTTGAGATAATGGGGTGATGGCAGGTTGTGGGGAAGGTTGAATTACTTGTTGATGTGATTGCTGTGTTTCTGTGATTACTTCCAATGGTTTTTGAGGCTGCACAGGAGCTTGAACGAGTTCGTGATTTTTATGATGATC</canonical_amplicon>
		<polymorphic_amplicon>CATCTCATTGACGTTTCTATCTCTGATTAGCTCACCGAAACGAGCACGAACGGATTCCCCTTCTGTCGGTGATGTTTGCGGGATTTCAGATGCTGATTGTGCAACAGTTGGTTGAGATAATGGGGTGATGGCAGGTTGTGGGGAARGTTGAATTACTTGTTGATGTGATTGCTGTGTTTCTGTGATTACTTCCAATGGTTTTTGAGGCTGCACAGGAGCTTGAACGAGTTCGTGATTTTTATGATGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27343</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>198926</contig_pos>
        <strand>+</strand>
        <context>AACTTTATGA[A/C]TAAAAAAGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGAACTTTCAAATGCTTTTTTTCTCTTTAAACAATAATAAACTTTATGA</left_flank>
        <right_flank>TAAAAAAGTACACCTAAATTTTCAACAAGAATACAAAAAAATCTAAAAAA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGGGCGAAATTCCAAATCAAGGATATCAAGGTTCTTCAAACATCCAGCTCTAGAAACTTCCAAAAGTTTGCAAGCACTATGGAATCGTGGATTGTTACTCATAAAGGATTCCTTGAGGTAAATATCTCGACGAGAAAAATTCAAAATATACGAACAATCATTGCAGAATCTCCTGAACACCTACATCCGTGGTAGCCTACCAGTCCATCTCCGATCTCCTCTTGTCTGGACGCAACGCCTTCACGGACGCCCCAATTTTTCTACATCATCGCTCAATTTTCATGTTCATCCACACTTCTCACCATCGCTTCGAGTCATGGTCTAGAACGAACTATTCTCTGAGAATCTTTAAAAATCTATCTGTAGTTGTTGGTAAACCATCTTATTAATTGTGACGATCTCATCGTAATAATTTGATACTCAAACTCAAAACAATACTGGTAATTGTTGAACTTTCAAATGCTTTTTTTCTCTTTAAACAATAATAAACTTTATGACTAAAAAAGTACACCTAAATTTTCAACAAGAATACAAAAAAATCTAAAAAAGAAAACAATAAAAAAGTAGCTGGAAAGCTCTATGCAGTAAATCCAGCACTGGTATCGTTGGATCGCATTACATCCATAATCTCTTTCGCTCGGTCCGCATACTTTTTCGCTTGATCCAAATCCTTTGGAACGCCATCTCCCAATTTGAACATTCTCGAAACGTTTGCGCAACTTTGAGGAATATCTAGGTCACATGCTCGAATTGCATATTGAAGACTTTTTTCCATATCACGTGACAATTGGCCAAGGTCTGATCGGTCGAGCTCCTGAAATAAATACGCAATTTTGTTGACGAGTACAAAATAGATCGCTTGAAACGTCACACACTAAAAATTCTTTAAATTTTTCGACAAGGATAATACCAGCCACGAGGGAGCAAGTTGCTTGCTGTGCACAACACCGTAATTTACAGAGACTGCAAACACGAGATGGCAGATTAGACAACAAAGA</canonical>
            <polymorphic>GGAGGGCGAAATTCCAAATCAAGGATATCAAGGTTCTTCAAACATCCAGCTCTAGAAACTTCCAAAAGTTTGCAAGCACTATGGAATCGTGGATTGTTACTCATAAAGGATTCCTTGAGGTAAATATCTCGACGAGAAAAATTCAAAATATACGAACAATCATTGCAGAATCTCCTGAACACCTACATCCGTGGTAGCCTACCAGTCCATCTCCGATCTCCTCTTGTCTGGACGCAACGCCTTCACGGACGCCCCAATTTTTCTACATCATCGCTCAATTTTCATGTTCATCCACACTTCTCACCATCGCTTCGAGTCATGGTCTAGAACGAACTATTCTCTGAGAATCTTTAAAAATCTATCTGTAGTTGTTGGTAAACCATCTTATTAATTGTGACGATCTCATCGTAATAATTTGATACTCAAACTCAAAACAATACTGGTAATTGTTGAACTTTCAAATGCTTTTTTTCTCTTTAAACAATAATAAACTTTATGAMTAAAAAAGTACACCTAAATTTTCAACAAGAATACAAAAAAATCTAAAAAAGAAAACAATAAAAAAGTAGCTGGAAAGCTCTATGCAGTAAATCCAGCACTGGTATCGTTGGATCGCATTACATCCATAATCTCTTTCGCTCGGTCCGCATACTTTTTCGCTTGATCCAAATCCTTTGGAACGCCATCTCCCAATTTGAACATTCTCGAAACGTTTGCGCAACTTTGAGGAATATCTAGGTCACATGCTCGAATTGCATATTGAAGACTTTTTTCCATATCACGTGACAATTGGCCAAGGTCTGATCGGTCGAGCTCCTGAAATAAATACGCAATTTTGTTGACGAGTACAAAATAGATCGCTTGAAACGTCACACACTAAAAATTCTTTAAATTTTTCGACAAGGATAATACCAGCCACGAGGGAGCAAGTTGCTTGCTGTGCACAACACCGTAATTTACAGAGACTGCAAACACGAGATGGCAGATTAGACAACAAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACGATCTCATCGTAATAATTT</pcr_primer_p1>
		<pcr_primer_p2>CGAAAGAGATTATGGATGTAATG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TGACGATCTCATCGTAATAATTTGATACTCAAACTCAAAACAATACTGGTAATTGTTGAACTTTCAAATGCTTTTTTTCTCTTTAAACAATAATAAACTTTATGACTAAAAAAGTACACCTAAATTTTCAACAAGAATACAAAAAAATCTAAAAAAGAAAACAATAAAAAAGTAGCTGGAAAGCTCTATGCAGTAAATCCAGCACTGGTATCGTTGGATCGCATTACATCCATAATCTCTTTCG</canonical_amplicon>
		<polymorphic_amplicon>TGACGATCTCATCGTAATAATTTGATACTCAAACTCAAAACAATACTGGTAATTGTTGAACTTTCAAATGCTTTTTTTCTCTTTAAACAATAATAAACTTTATGAMTAAAAAAGTACACCTAAATTTTCAACAAGAATACAAAAAAATCTAAAAAAGAAAACAATAAAAAAGTAGCTGGAAAGCTCTATGCAGTAAATCCAGCACTGGTATCGTTGGATCGCATTACATCCATAATCTCTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27344</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>199103</contig_pos>
        <strand>+</strand>
        <context>CAAATCCTTT[C/G]GAACGCCATC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAATCTCTTTCGCTCGGTCCGCATACTTTTTCGCTTGATCCAAATCCTTT</left_flank>
        <right_flank>GAACGCCATCTCCCAATTTGAACATTCTCGAAACGTTTGCGCAACTTTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACACCTACATCCGTGGTAGCCTACCAGTCCATCTCCGATCTCCTCTTGTCTGGACGCAACGCCTTCACGGACGCCCCAATTTTTCTACATCATCGCTCAATTTTCATGTTCATCCACACTTCTCACCATCGCTTCGAGTCATGGTCTAGAACGAACTATTCTCTGAGAATCTTTAAAAATCTATCTGTAGTTGTTGGTAAACCATCTTATTAATTGTGACGATCTCATCGTAATAATTTGATACTCAAACTCAAAACAATACTGGTAATTGTTGAACTTTCAAATGCTTTTTTTCTCTTTAAACAATAATAAACTTTATGACTAAAAAAGTACACCTAAATTTTCAACAAGAATACAAAAAAATCTAAAAAAGAAAACAATAAAAAAGTAGCTGGAAAGCTCTATGCAGTAAATCCAGCACTGGTATCGTTGGATCGCATTACATCCATAATCTCTTTCGCTCGGTCCGCATACTTTTTCGCTTGATCCAAATCCTTTGGAACGCCATCTCCCAATTTGAACATTCTCGAAACGTTTGCGCAACTTTGAGGAATATCTAGGTCACATGCTCGAATTGCATATTGAAGACTTTTTTCCATATCACGTGACAATTGGCCAAGGTCTGATCGGTCGAGCTCCTGAAATAAATACGCAATTTTGTTGACGAGTACAAAATAGATCGCTTGAAACGTCACACACTAAAAATTCTTTAAATTTTTCGACAAGGATAATACCAGCCACGAGGGAGCAAGTTGCTTGCTGTGCACAACACCGTAATTTACAGAGACTGCAAACACGAGATGGCAGATTAGACAACAAAGAAGGAAATTATAATAAGGGTTGTTTACCTTGGCTTCTCCAGAAGCAGTCGTCTTGAACTTCTCCTTATTACCCATGTACCATGTGCTTAGCAGCCAACATGCTTCACCGTCTTCCAGTTCACAAGCCCGCCTCATATATCTTTCAGCTTTCTCTGAATCTGCCTTCCGATCTTTTTCT</canonical>
            <polymorphic>AACACCTACATCCGTGGTAGCCTACCAGTCCATCTCCGATCTCCTCTTGTCTGGACGCAACGCCTTCACGGACGCCCCAATTTTTCTACATCATCGCTCAATTTTCATGTTCATCCACACTTCTCACCATCGCTTCGAGTCATGGTCTAGAACGAACTATTCTCTGAGAATCTTTAAAAATCTATCTGTAGTTGTTGGTAAACCATCTTATTAATTGTGACGATCTCATCGTAATAATTTGATACTCAAACTCAAAACAATACTGGTAATTGTTGAACTTTCAAATGCTTTTTTTCTCTTTAAACAATAATAAACTTTATGACTAAAAAAGTACACCTAAATTTTCAACAAGAATACAAAAAAATCTAAAAAAGAAAACAATAAAAAAGTAGCTGGAAAGCTCTATGCAGTAAATCCAGCACTGGTATCGTTGGATCGCATTACATCCATAATCTCTTTCGCTCGGTCCGCATACTTTTTCGCTTGATCCAAATCCTTTSGAACGCCATCTCCCAATTTGAACATTCTCGAAACGTTTGCGCAACTTTGAGGAATATCTAGGTCACATGCTCGAATTGCATATTGAAGACTTTTTTCCATATCACGTGACAATTGGCCAAGGTCTGATCGGTCGAGCTCCTGAAATAAATACGCAATTTTGTTGACGAGTACAAAATAGATCGCTTGAAACGTCACACACTAAAAATTCTTTAAATTTTTCGACAAGGATAATACCAGCCACGAGGGAGCAAGTTGCTTGCTGTGCACAACACCGTAATTTACAGAGACTGCAAACACGAGATGGCAGATTAGACAACAAAGAAGGAAATTATAATAAGGGTTGTTTACCTTGGCTTCTCCAGAAGCAGTCGTCTTGAACTTCTCCTTATTACCCATGTACCATGTGCTTAGCAGCCAACATGCTTCACCGTCTTCCAGTTCACAAGCCCGCCTCATATATCTTTCAGCTTTCTCTGAATCTGCCTTCCGATCTTTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCATTACATCCATAATCTCTTTC</pcr_primer_p1>
		<pcr_primer_p2>CGATCTATTTTGTACTCGTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GCATTACATCCATAATCTCTTTCGCTCGGTCCGCATACTTTTTCGCTTGATCCAAATCCTTTGGAACGCCATCTCCCAATTTGAACATTCTCGAAACGTTTGCGCAACTTTGAGGAATATCTAGGTCACATGCTCGAATTGCATATTGAAGACTTTTTTCCATATCACGTGACAATTGGCCAAGGTCTGATCGGTCGAGCTCCTGAAATAAATACGCAATTTTGTTGACGAGTACAAAATAGATCG</canonical_amplicon>
		<polymorphic_amplicon>GCATTACATCCATAATCTCTTTCGCTCGGTCCGCATACTTTTTCGCTTGATCCAAATCCTTTSGAACGCCATCTCCCAATTTGAACATTCTCGAAACGTTTGCGCAACTTTGAGGAATATCTAGGTCACATGCTCGAATTGCATATTGAAGACTTTTTTCCATATCACGTGACAATTGGCCAAGGTCTGATCGGTCGAGCTCCTGAAATAAATACGCAATTTTGTTGACGAGTACAAAATAGATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27345</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>211320</contig_pos>
        <strand>+</strand>
        <context>TTAATAGGTT[A/C]GAATTGAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAAAAGATAAGAACTGGTTTTTATCGTTTTGTATTAAAATTAATAGGTT</left_flank>
        <right_flank>GAATTGAAATATGTCAAATTTAACCTTGGACCGAGACTCATGGAAGAACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTGAGATCATCAGGAATTGGATGAGCGTCGACCCAAGAACGACAGGCGTACTCAAAGAAGTCTTCACATGGATCCAGAGACAAGTTCAGACTCTTCTGGAGAAGTCGAGAAGCCTCTTGATATCCTTCTGAATCGCCAACAGTGTACGTCTTCTTCTCCTCCTCAACCACTGTATTCTTCTCCTCGGTCTTGTCTTCCGTCTTCGTCGCATTCACATCATTGTTGACGACGAATGGAACTCGTGGCAAAGCACACACAGTGCCACCAAGAACCAAGCAACAAACGGCAATTAGGAAGACGACTCGAGGGCCGTTGGGAGTCGTCATGGCTCCTGAAAATTGAAAAATTGAAAAAAGAGGTCTTGAAAAAAAATGAGATGATAGTTGTGAAGAAAGTGTTTAAGAACAGAGAACGTCACTCGGTCATCCGCAGCAGGGAGGGCAAGATGAAAAAGATAAGAACTGGTTTTTATCGTTTTGTATTAAAATTAATAGGTTCGAATTGAAATATGTCAAATTTAACCTTGGACCGAGACTCATGGAAGAACCACTCCATCAAATGAAATGAAAGTTGTCTAAAGATTATCCACAAGGGAGGAAACTGTCTAACTGTTCCTTGTAGAGAGTGAAAGAGATGAAGAAACGATTCCCACCAAATCGTGAAATGGACAGGACACAATCCACTGATAACCAAAACGAGAGGAGGCTATCCGATGGATTGACTGACTGTCTCCGATCGGCCATAACCATAAAAGGAGGGGGAGGAGGTCTCTTTCCATTTTCTTTCTTTTCCTTTTTCCAAGATGAACAGGACTGGGGCGAGGAGCAAATATTTGGTAAGCGTGTTTTGACCTTGACCCGTTTTTGGAGTTTTGGAACGGTGAAGGGAAGGCCTGTGTGGAGAGGGAAGGGCAGAGGGCTTTTAGAGCAACAAAGAATGGGCGTGGTCTGCATGGAAAGCAACATTTCGAAGAGCAGGTCGAACCGACGATGCCGGAT</canonical>
            <polymorphic>AAGTGAGATCATCAGGAATTGGATGAGCGTCGACCCAAGAACGACAGGCGTACTCAAAGAAGTCTTCACATGGATCCAGAGACAAGTTCAGACTCTTCTGGAGAAGTCGAGAAGCCTCTTGATATCCTTCTGAATCGCCAACAGTGTACGTCTTCTTCTCCTCCTCAACCACTGTATTCTTCTCCTCGGTCTTGTCTTCCGTCTTCGTCGCATTCACATCATTGTTGACGACGAATGGAACTCGTGGCAAAGCACACACAGTGCCACCAAGAACCAAGCAACAAACGGCAATTAGGAAGACGACTCGAGGGCCGTTGGGAGTCGTCATGGCTCCTGAAAATTGAAAAATTGAAAAAAGAGGTCTTGAAAAAAAATGAGATGATAGTTGTGAAGAAAGTGTTTAAGAACAGAGAACGTCACTCGGTCATCCGCAGCAGGGAGGGCAAGATGAAAAAGATAAGAACTGGTTTTTATCGTTTTGTATTAAAATTAATAGGTTMGAATTGAAATATGTCAAATTTAACCTTGGACCGAGACTCATGGAAGAACCACTCCATCAAATGAAATGAAAGTTGTCTAAAGATTATCCACAAGGGAGGAAACTGTCTAACTGTTCCTTGTAGAGAGTGAAAGAGATGAAGAAACGATTCCCACCAAATCGTGAAATGGACAGGACACAATCCACTGATAACCAAAACGAGAGGAGGCTATCCGATGGATTGACTGACTGTCTCCGATCGGCCATAACCATAAAAGGAGGGGGAGGAGGTCTCTTTCCATTTTCTTTCTTTTCCTTTTTCCAAGATGAACAGGACTGGGGCGAGGAGCAAATATTTGGTAAGCGTGTTTTGACCTTGACCCGTTTTTGGAGTTTTGGAACGGTGAAGGGAAGGCCTGTGTGGAGAGGGAAGGGCAGAGGGCTTTTAGAGCAACAAAGAATGGGCGTGGTCTGCATGGAAAGCAACATTTCGAAGAGCAGGTCGAACCGACGATGCCGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>499 470 31</canonical_bands>
                <polymorphic_bands>969 31</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>470 198 194 77 31 18 12</canonical_bands>
                <polymorphic_bands>664 198 77 31 18 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGAAGAAAGTGTTTAAGAACAG</pcr_primer_p1>
		<pcr_primer_p2>TCTTTCACTCTCTACAAGGAACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTGAAGAAAGTGTTTAAGAACAGAGAACGTCACTCGGTCATCCGCAGCAGGGAGGGCAAGATGAAAAAGATAAGAACTGGTTTTTATCGTTTTGTATTAAAATTAATAGGTTCGAATTGAAATATGTCAAATTTAACCTTGGACCGAGACTCATGGAAGAACCACTCCATCAAATGAAATGAAAGTTGTCTAAAGATTATCCACAAGGGAGGAAACTGTCTAACTGTTCCTTGTAGAGAGTGAAAGA</canonical_amplicon>
		<polymorphic_amplicon>TGTGAAGAAAGTGTTTAAGAACAGAGAACGTCACTCGGTCATCCGCAGCAGGGAGGGCAAGATGAAAAAGATAAGAACTGGTTTTTATCGTTTTGTATTAAAATTAATAGGTTMGAATTGAAATATGTCAAATTTAACCTTGGACCGAGACTCATGGAAGAACCACTCCATCAAATGAAATGAAAGTTGTCTAAAGATTATCCACAAGGGAGGAAACTGTCTAACTGTTCCTTGTAGAGAGTGAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27346</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>211350</contig_pos>
        <strand>+</strand>
        <context>TTAACCTTGG[A/G]CCGAGACTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTATTAAAATTAATAGGTTCGAATTGAAATATGTCAAATTTAACCTTGG</left_flank>
        <right_flank>CCGAGACTCATGGAAGAACCACTCCATCAAATGAAATGAAAGTTGTCTAA</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGACCCAAGAACGACAGGCGTACTCAAAGAAGTCTTCACATGGATCCAGAGACAAGTTCAGACTCTTCTGGAGAAGTCGAGAAGCCTCTTGATATCCTTCTGAATCGCCAACAGTGTACGTCTTCTTCTCCTCCTCAACCACTGTATTCTTCTCCTCGGTCTTGTCTTCCGTCTTCGTCGCATTCACATCATTGTTGACGACGAATGGAACTCGTGGCAAAGCACACACAGTGCCACCAAGAACCAAGCAACAAACGGCAATTAGGAAGACGACTCGAGGGCCGTTGGGAGTCGTCATGGCTCCTGAAAATTGAAAAATTGAAAAAAGAGGTCTTGAAAAAAAATGAGATGATAGTTGTGAAGAAAGTGTTTAAGAACAGAGAACGTCACTCGGTCATCCGCAGCAGGGAGGGCAAGATGAAAAAGATAAGAACTGGTTTTTATCGTTTTGTATTAAAATTAATAGGTTCGAATTGAAATATGTCAAATTTAACCTTGGACCGAGACTCATGGAAGAACCACTCCATCAAATGAAATGAAAGTTGTCTAAAGATTATCCACAAGGGAGGAAACTGTCTAACTGTTCCTTGTAGAGAGTGAAAGAGATGAAGAAACGATTCCCACCAAATCGTGAAATGGACAGGACACAATCCACTGATAACCAAAACGAGAGGAGGCTATCCGATGGATTGACTGACTGTCTCCGATCGGCCATAACCATAAAAGGAGGGGGAGGAGGTCTCTTTCCATTTTCTTTCTTTTCCTTTTTCCAAGATGAACAGGACTGGGGCGAGGAGCAAATATTTGGTAAGCGTGTTTTGACCTTGACCCGTTTTTGGAGTTTTGGAACGGTGAAGGGAAGGCCTGTGTGGAGAGGGAAGGGCAGAGGGCTTTTAGAGCAACAAAGAATGGGCGTGGTCTGCATGGAAAGCAACATTTCGAAGAGCAGGTCGAACCGACGATGCCGGATCGGATTGAAAGCAGAAAAAAATGCATTGAA</canonical>
            <polymorphic>CGACCCAAGAACGACAGGCGTACTCAAAGAAGTCTTCACATGGATCCAGAGACAAGTTCAGACTCTTCTGGAGAAGTCGAGAAGCCTCTTGATATCCTTCTGAATCGCCAACAGTGTACGTCTTCTTCTCCTCCTCAACCACTGTATTCTTCTCCTCGGTCTTGTCTTCCGTCTTCGTCGCATTCACATCATTGTTGACGACGAATGGAACTCGTGGCAAAGCACACACAGTGCCACCAAGAACCAAGCAACAAACGGCAATTAGGAAGACGACTCGAGGGCCGTTGGGAGTCGTCATGGCTCCTGAAAATTGAAAAATTGAAAAAAGAGGTCTTGAAAAAAAATGAGATGATAGTTGTGAAGAAAGTGTTTAAGAACAGAGAACGTCACTCGGTCATCCGCAGCAGGGAGGGCAAGATGAAAAAGATAAGAACTGGTTTTTATCGTTTTGTATTAAAATTAATAGGTTCGAATTGAAATATGTCAAATTTAACCTTGGRCCGAGACTCATGGAAGAACCACTCCATCAAATGAAATGAAAGTTGTCTAAAGATTATCCACAAGGGAGGAAACTGTCTAACTGTTCCTTGTAGAGAGTGAAAGAGATGAAGAAACGATTCCCACCAAATCGTGAAATGGACAGGACACAATCCACTGATAACCAAAACGAGAGGAGGCTATCCGATGGATTGACTGACTGTCTCCGATCGGCCATAACCATAAAAGGAGGGGGAGGAGGTCTCTTTCCATTTTCTTTCTTTTCCTTTTTCCAAGATGAACAGGACTGGGGCGAGGAGCAAATATTTGGTAAGCGTGTTTTGACCTTGACCCGTTTTTGGAGTTTTGGAACGGTGAAGGGAAGGCCTGTGTGGAGAGGGAAGGGCAGAGGGCTTTTAGAGCAACAAAGAATGGGCGTGGTCTGCATGGAAAGCAACATTTCGAAGAGCAGGTCGAACCGACGATGCCGGATCGGATTGAAAGCAGAAAAAAATGCATTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGAAGAAAGTGTTTAAGAACAG</pcr_primer_p1>
		<pcr_primer_p2>TCTTTCACTCTCTACAAGGAACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTGAAGAAAGTGTTTAAGAACAGAGAACGTCACTCGGTCATCCGCAGCAGGGAGGGCAAGATGAAAAAGATAAGAACTGGTTTTTATCGTTTTGTATTAAAATTAATAGGTTCGAATTGAAATATGTCAAATTTAACCTTGGACCGAGACTCATGGAAGAACCACTCCATCAAATGAAATGAAAGTTGTCTAAAGATTATCCACAAGGGAGGAAACTGTCTAACTGTTCCTTGTAGAGAGTGAAAGA</canonical_amplicon>
		<polymorphic_amplicon>TGTGAAGAAAGTGTTTAAGAACAGAGAACGTCACTCGGTCATCCGCAGCAGGGAGGGCAAGATGAAAAAGATAAGAACTGGTTTTTATCGTTTTGTATTAAAATTAATAGGTTCGAATTGAAATATGTCAAATTTAACCTTGGRCCGAGACTCATGGAAGAACCACTCCATCAAATGAAATGAAAGTTGTCTAAAGATTATCCACAAGGGAGGAAACTGTCTAACTGTTCCTTGTAGAGAGTGAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27347</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>211422</contig_pos>
        <strand>+</strand>
        <context>AAGGGAGGAA[A/C]CTGTCTAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTCCATCAAATGAAATGAAAGTTGTCTAAAGATTATCCACAAGGGAGGAA</left_flank>
        <right_flank>CTGTCTAACTGTTCCTTGTAGAGAGTGAAAGAGATGAAGAAACGATTCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGTCGAGAAGCCTCTTGATATCCTTCTGAATCGCCAACAGTGTACGTCTTCTTCTCCTCCTCAACCACTGTATTCTTCTCCTCGGTCTTGTCTTCCGTCTTCGTCGCATTCACATCATTGTTGACGACGAATGGAACTCGTGGCAAAGCACACACAGTGCCACCAAGAACCAAGCAACAAACGGCAATTAGGAAGACGACTCGAGGGCCGTTGGGAGTCGTCATGGCTCCTGAAAATTGAAAAATTGAAAAAAGAGGTCTTGAAAAAAAATGAGATGATAGTTGTGAAGAAAGTGTTTAAGAACAGAGAACGTCACTCGGTCATCCGCAGCAGGGAGGGCAAGATGAAAAAGATAAGAACTGGTTTTTATCGTTTTGTATTAAAATTAATAGGTTCGAATTGAAATATGTCAAATTTAACCTTGGACCGAGACTCATGGAAGAACCACTCCATCAAATGAAATGAAAGTTGTCTAAAGATTATCCACAAGGGAGGAAACTGTCTAACTGTTCCTTGTAGAGAGTGAAAGAGATGAAGAAACGATTCCCACCAAATCGTGAAATGGACAGGACACAATCCACTGATAACCAAAACGAGAGGAGGCTATCCGATGGATTGACTGACTGTCTCCGATCGGCCATAACCATAAAAGGAGGGGGAGGAGGTCTCTTTCCATTTTCTTTCTTTTCCTTTTTCCAAGATGAACAGGACTGGGGCGAGGAGCAAATATTTGGTAAGCGTGTTTTGACCTTGACCCGTTTTTGGAGTTTTGGAACGGTGAAGGGAAGGCCTGTGTGGAGAGGGAAGGGCAGAGGGCTTTTAGAGCAACAAAGAATGGGCGTGGTCTGCATGGAAAGCAACATTTCGAAGAGCAGGTCGAACCGACGATGCCGGATCGGATTGAAAGCAGAAAAAAATGCATTGAAAGAGAAGGAATTCCTAGGAATGGAAGGTTTATTGATGGTTGCAAAAGGATCCAAAAACGGAGAAGTTTAATT</canonical>
            <polymorphic>GAAGTCGAGAAGCCTCTTGATATCCTTCTGAATCGCCAACAGTGTACGTCTTCTTCTCCTCCTCAACCACTGTATTCTTCTCCTCGGTCTTGTCTTCCGTCTTCGTCGCATTCACATCATTGTTGACGACGAATGGAACTCGTGGCAAAGCACACACAGTGCCACCAAGAACCAAGCAACAAACGGCAATTAGGAAGACGACTCGAGGGCCGTTGGGAGTCGTCATGGCTCCTGAAAATTGAAAAATTGAAAAAAGAGGTCTTGAAAAAAAATGAGATGATAGTTGTGAAGAAAGTGTTTAAGAACAGAGAACGTCACTCGGTCATCCGCAGCAGGGAGGGCAAGATGAAAAAGATAAGAACTGGTTTTTATCGTTTTGTATTAAAATTAATAGGTTCGAATTGAAATATGTCAAATTTAACCTTGGACCGAGACTCATGGAAGAACCACTCCATCAAATGAAATGAAAGTTGTCTAAAGATTATCCACAAGGGAGGAAMCTGTCTAACTGTTCCTTGTAGAGAGTGAAAGAGATGAAGAAACGATTCCCACCAAATCGTGAAATGGACAGGACACAATCCACTGATAACCAAAACGAGAGGAGGCTATCCGATGGATTGACTGACTGTCTCCGATCGGCCATAACCATAAAAGGAGGGGGAGGAGGTCTCTTTCCATTTTCTTTCTTTTCCTTTTTCCAAGATGAACAGGACTGGGGCGAGGAGCAAATATTTGGTAAGCGTGTTTTGACCTTGACCCGTTTTTGGAGTTTTGGAACGGTGAAGGGAAGGCCTGTGTGGAGAGGGAAGGGCAGAGGGCTTTTAGAGCAACAAAGAATGGGCGTGGTCTGCATGGAAAGCAACATTTCGAAGAGCAGGTCGAACCGACGATGCCGGATCGGATTGAAAGCAGAAAAAAATGCATTGAAAGAGAAGGAATTCCTAGGAATGGAAGGTTTATTGATGGTTGCAAAAGGATCCAAAAACGGAGAAGTTTAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>344 221 152 117 87 41 30 8</canonical_bands>
                <polymorphic_bands>352 221 152 117 87 41 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCCATCAAATGAAATGAAAG</pcr_primer_p1>
		<pcr_primer_p2>GAAAAAGGAAAAGAAAGAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTCCATCAAATGAAATGAAAGTTGTCTAAAGATTATCCACAAGGGAGGAAACTGTCTAACTGTTCCTTGTAGAGAGTGAAAGAGATGAAGAAACGATTCCCACCAAATCGTGAAATGGACAGGACACAATCCACTGATAACCAAAACGAGAGGAGGCTATCCGATGGATTGACTGACTGTCTCCGATCGGCCATAACCATAAAAGGAGGGGGAGGAGGTCTCTTTCCATTTTCTTTCTTTTCCTTTTTC</canonical_amplicon>
		<polymorphic_amplicon>ACTCCATCAAATGAAATGAAAGTTGTCTAAAGATTATCCACAAGGGAGGAAMCTGTCTAACTGTTCCTTGTAGAGAGTGAAAGAGATGAAGAAACGATTCCCACCAAATCGTGAAATGGACAGGACACAATCCACTGATAACCAAAACGAGAGGAGGCTATCCGATGGATTGACTGACTGTCTCCGATCGGCCATAACCATAAAAGGAGGGGGAGGAGGTCTCTTTCCATTTTCTTTCTTTTCCTTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27348</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>211457</contig_pos>
        <strand>+</strand>
        <context>GTGAAAGAGA[C/T]GAAGAAACGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCACAAGGGAGGAAACTGTCTAACTGTTCCTTGTAGAGAGTGAAAGAGA</left_flank>
        <right_flank>GAAGAAACGATTCCCACCAAATCGTGAAATGGACAGGACACAATCCACTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAACAGTGTACGTCTTCTTCTCCTCCTCAACCACTGTATTCTTCTCCTCGGTCTTGTCTTCCGTCTTCGTCGCATTCACATCATTGTTGACGACGAATGGAACTCGTGGCAAAGCACACACAGTGCCACCAAGAACCAAGCAACAAACGGCAATTAGGAAGACGACTCGAGGGCCGTTGGGAGTCGTCATGGCTCCTGAAAATTGAAAAATTGAAAAAAGAGGTCTTGAAAAAAAATGAGATGATAGTTGTGAAGAAAGTGTTTAAGAACAGAGAACGTCACTCGGTCATCCGCAGCAGGGAGGGCAAGATGAAAAAGATAAGAACTGGTTTTTATCGTTTTGTATTAAAATTAATAGGTTCGAATTGAAATATGTCAAATTTAACCTTGGACCGAGACTCATGGAAGAACCACTCCATCAAATGAAATGAAAGTTGTCTAAAGATTATCCACAAGGGAGGAAACTGTCTAACTGTTCCTTGTAGAGAGTGAAAGAGATGAAGAAACGATTCCCACCAAATCGTGAAATGGACAGGACACAATCCACTGATAACCAAAACGAGAGGAGGCTATCCGATGGATTGACTGACTGTCTCCGATCGGCCATAACCATAAAAGGAGGGGGAGGAGGTCTCTTTCCATTTTCTTTCTTTTCCTTTTTCCAAGATGAACAGGACTGGGGCGAGGAGCAAATATTTGGTAAGCGTGTTTTGACCTTGACCCGTTTTTGGAGTTTTGGAACGGTGAAGGGAAGGCCTGTGTGGAGAGGGAAGGGCAGAGGGCTTTTAGAGCAACAAAGAATGGGCGTGGTCTGCATGGAAAGCAACATTTCGAAGAGCAGGTCGAACCGACGATGCCGGATCGGATTGAAAGCAGAAAAAAATGCATTGAAAGAGAAGGAATTCCTAGGAATGGAAGGTTTATTGATGGTTGCAAAAGGATCCAAAAACGGAGAAGTTTAATTTTTTTCCTATTCCCGAGAGCAACGGTTACAGAAAA</canonical>
            <polymorphic>CCAACAGTGTACGTCTTCTTCTCCTCCTCAACCACTGTATTCTTCTCCTCGGTCTTGTCTTCCGTCTTCGTCGCATTCACATCATTGTTGACGACGAATGGAACTCGTGGCAAAGCACACACAGTGCCACCAAGAACCAAGCAACAAACGGCAATTAGGAAGACGACTCGAGGGCCGTTGGGAGTCGTCATGGCTCCTGAAAATTGAAAAATTGAAAAAAGAGGTCTTGAAAAAAAATGAGATGATAGTTGTGAAGAAAGTGTTTAAGAACAGAGAACGTCACTCGGTCATCCGCAGCAGGGAGGGCAAGATGAAAAAGATAAGAACTGGTTTTTATCGTTTTGTATTAAAATTAATAGGTTCGAATTGAAATATGTCAAATTTAACCTTGGACCGAGACTCATGGAAGAACCACTCCATCAAATGAAATGAAAGTTGTCTAAAGATTATCCACAAGGGAGGAAACTGTCTAACTGTTCCTTGTAGAGAGTGAAAGAGAYGAAGAAACGATTCCCACCAAATCGTGAAATGGACAGGACACAATCCACTGATAACCAAAACGAGAGGAGGCTATCCGATGGATTGACTGACTGTCTCCGATCGGCCATAACCATAAAAGGAGGGGGAGGAGGTCTCTTTCCATTTTCTTTCTTTTCCTTTTTCCAAGATGAACAGGACTGGGGCGAGGAGCAAATATTTGGTAAGCGTGTTTTGACCTTGACCCGTTTTTGGAGTTTTGGAACGGTGAAGGGAAGGCCTGTGTGGAGAGGGAAGGGCAGAGGGCTTTTAGAGCAACAAAGAATGGGCGTGGTCTGCATGGAAAGCAACATTTCGAAGAGCAGGTCGAACCGACGATGCCGGATCGGATTGAAAGCAGAAAAAAATGCATTGAAAGAGAAGGAATTCCTAGGAATGGAAGGTTTATTGATGGTTGCAAAAGGATCCAAAAACGGAGAAGTTTAATTTTTTTCCTATTCCCGAGAGCAACGGTTACAGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCCATCAAATGAAATGAAAG</pcr_primer_p1>
		<pcr_primer_p2>GAAAAAGGAAAAGAAAGAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTCCATCAAATGAAATGAAAGTTGTCTAAAGATTATCCACAAGGGAGGAAACTGTCTAACTGTTCCTTGTAGAGAGTGAAAGAGATGAAGAAACGATTCCCACCAAATCGTGAAATGGACAGGACACAATCCACTGATAACCAAAACGAGAGGAGGCTATCCGATGGATTGACTGACTGTCTCCGATCGGCCATAACCATAAAAGGAGGGGGAGGAGGTCTCTTTCCATTTTCTTTCTTTTCCTTTTTC</canonical_amplicon>
		<polymorphic_amplicon>ACTCCATCAAATGAAATGAAAGTTGTCTAAAGATTATCCACAAGGGAGGAAACTGTCTAACTGTTCCTTGTAGAGAGTGAAAGAGAYGAAGAAACGATTCCCACCAAATCGTGAAATGGACAGGACACAATCCACTGATAACCAAAACGAGAGGAGGCTATCCGATGGATTGACTGACTGTCTCCGATCGGCCATAACCATAAAAGGAGGGGGAGGAGGTCTCTTTCCATTTTCTTTCTTTTCCTTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27349</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>211473</contig_pos>
        <strand>+</strand>
        <context>AACGATTCCC[A/C]CCAAATCGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGTCTAACTGTTCCTTGTAGAGAGTGAAAGAGATGAAGAAACGATTCCC</left_flank>
        <right_flank>CCAAATCGTGAAATGGACAGGACACAATCCACTGATAACCAAAACGAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTCTCCTCCTCAACCACTGTATTCTTCTCCTCGGTCTTGTCTTCCGTCTTCGTCGCATTCACATCATTGTTGACGACGAATGGAACTCGTGGCAAAGCACACACAGTGCCACCAAGAACCAAGCAACAAACGGCAATTAGGAAGACGACTCGAGGGCCGTTGGGAGTCGTCATGGCTCCTGAAAATTGAAAAATTGAAAAAAGAGGTCTTGAAAAAAAATGAGATGATAGTTGTGAAGAAAGTGTTTAAGAACAGAGAACGTCACTCGGTCATCCGCAGCAGGGAGGGCAAGATGAAAAAGATAAGAACTGGTTTTTATCGTTTTGTATTAAAATTAATAGGTTCGAATTGAAATATGTCAAATTTAACCTTGGACCGAGACTCATGGAAGAACCACTCCATCAAATGAAATGAAAGTTGTCTAAAGATTATCCACAAGGGAGGAAACTGTCTAACTGTTCCTTGTAGAGAGTGAAAGAGATGAAGAAACGATTCCCACCAAATCGTGAAATGGACAGGACACAATCCACTGATAACCAAAACGAGAGGAGGCTATCCGATGGATTGACTGACTGTCTCCGATCGGCCATAACCATAAAAGGAGGGGGAGGAGGTCTCTTTCCATTTTCTTTCTTTTCCTTTTTCCAAGATGAACAGGACTGGGGCGAGGAGCAAATATTTGGTAAGCGTGTTTTGACCTTGACCCGTTTTTGGAGTTTTGGAACGGTGAAGGGAAGGCCTGTGTGGAGAGGGAAGGGCAGAGGGCTTTTAGAGCAACAAAGAATGGGCGTGGTCTGCATGGAAAGCAACATTTCGAAGAGCAGGTCGAACCGACGATGCCGGATCGGATTGAAAGCAGAAAAAAATGCATTGAAAGAGAAGGAATTCCTAGGAATGGAAGGTTTATTGATGGTTGCAAAAGGATCCAAAAACGGAGAAGTTTAATTTTTTTCCTATTCCCGAGAGCAACGGTTACAGAAAAGAAGGACTGGAAAGAG</canonical>
            <polymorphic>TCTTCTCCTCCTCAACCACTGTATTCTTCTCCTCGGTCTTGTCTTCCGTCTTCGTCGCATTCACATCATTGTTGACGACGAATGGAACTCGTGGCAAAGCACACACAGTGCCACCAAGAACCAAGCAACAAACGGCAATTAGGAAGACGACTCGAGGGCCGTTGGGAGTCGTCATGGCTCCTGAAAATTGAAAAATTGAAAAAAGAGGTCTTGAAAAAAAATGAGATGATAGTTGTGAAGAAAGTGTTTAAGAACAGAGAACGTCACTCGGTCATCCGCAGCAGGGAGGGCAAGATGAAAAAGATAAGAACTGGTTTTTATCGTTTTGTATTAAAATTAATAGGTTCGAATTGAAATATGTCAAATTTAACCTTGGACCGAGACTCATGGAAGAACCACTCCATCAAATGAAATGAAAGTTGTCTAAAGATTATCCACAAGGGAGGAAACTGTCTAACTGTTCCTTGTAGAGAGTGAAAGAGATGAAGAAACGATTCCCMCCAAATCGTGAAATGGACAGGACACAATCCACTGATAACCAAAACGAGAGGAGGCTATCCGATGGATTGACTGACTGTCTCCGATCGGCCATAACCATAAAAGGAGGGGGAGGAGGTCTCTTTCCATTTTCTTTCTTTTCCTTTTTCCAAGATGAACAGGACTGGGGCGAGGAGCAAATATTTGGTAAGCGTGTTTTGACCTTGACCCGTTTTTGGAGTTTTGGAACGGTGAAGGGAAGGCCTGTGTGGAGAGGGAAGGGCAGAGGGCTTTTAGAGCAACAAAGAATGGGCGTGGTCTGCATGGAAAGCAACATTTCGAAGAGCAGGTCGAACCGACGATGCCGGATCGGATTGAAAGCAGAAAAAAATGCATTGAAAGAGAAGGAATTCCTAGGAATGGAAGGTTTATTGATGGTTGCAAAAGGATCCAAAAACGGAGAAGTTTAATTTTTTTCCTATTCCCGAGAGCAACGGTTACAGAAAAGAAGGACTGGAAAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>206 162 132 124 46 45 39 39 38 30 24 20 18 15 14 10 9 8 7 5 3 2 2 2</canonical_bands>
                <polymorphic_bands>206 162 132 124 46 45 39 39 38 34 30 20 18 15 14 9 8 7 5 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCCATCAAATGAAATGAAAG</pcr_primer_p1>
		<pcr_primer_p2>GAAAAAGGAAAAGAAAGAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTCCATCAAATGAAATGAAAGTTGTCTAAAGATTATCCACAAGGGAGGAAACTGTCTAACTGTTCCTTGTAGAGAGTGAAAGAGATGAAGAAACGATTCCCACCAAATCGTGAAATGGACAGGACACAATCCACTGATAACCAAAACGAGAGGAGGCTATCCGATGGATTGACTGACTGTCTCCGATCGGCCATAACCATAAAAGGAGGGGGAGGAGGTCTCTTTCCATTTTCTTTCTTTTCCTTTTTC</canonical_amplicon>
		<polymorphic_amplicon>ACTCCATCAAATGAAATGAAAGTTGTCTAAAGATTATCCACAAGGGAGGAAACTGTCTAACTGTTCCTTGTAGAGAGTGAAAGAGATGAAGAAACGATTCCCMCCAAATCGTGAAATGGACAGGACACAATCCACTGATAACCAAAACGAGAGGAGGCTATCCGATGGATTGACTGACTGTCTCCGATCGGCCATAACCATAAAAGGAGGGGGAGGAGGTCTCTTTCCATTTTCTTTCTTTTCCTTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27350</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>259187</contig_pos>
        <strand></strand>
        <context>AGATACTTTT[C/T]GGTACAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGACGAGGCGTGGAATCGGAAAAGAAGAAATTTCGGGAAAGATACTTTT</left_flank>
        <right_flank>GGTACAAAATGCCCGGGGAGTCTCAGTCTGTGCTCTATTTTATTTGAATG</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAGCCCTATCCTGCTTACCAAAAGTGCCGTACTAGATAATGATACCTAATTACCATGAAAGAGTCATATGGTTTCATGTGAGAATCCATCTACGAAAGTGCATGCCATTAGTCTGAATTGGACTTTTTCTGTCTGAATACGACTGATGGCATCTATTTAATTTTGAAAGTGAAAAGAATACGGTAGTAGTAGTATATAACTAAGATTGGTGTTAATTACTGAAATGGAGAAGGAAAAGGACATTGTGGAATGCTCTTGAGATAATGTGATTGATGAGAAAAAAAAGGGGGAAGAAGGGGTCCTTCGCAAAAAAAAGAGAGAAGAAGAATGTGCAAAAAATTCACAAATCAAATATTCCAGAAGATAGAGAAGAGAAGGATCTTCTAAAGGGAAAAGAATCATTCTTTTTTCACTTTGTAACACCGAAAAAAAAAACAAAAGAGGTGTCCGACGAGGCGTGGAATCGGAAAAGAAGAAATTTCGGGAAAGATACTTTTCGGTACAAAATGCCCGGGGAGTCTCAGTCTGTGCTCTATTTTATTTGAATGACCCAAATCTGAAGAGATATCAGCGAAATAGTGTGTCTGACGAAGAGACGCGGGCAGAATTGAACGGTAAATAAGTGTGAAGTACTGTATGGCGGTGGCGGGAAGTTGTGCAAAAGACACAACTTGTTAGTACTCTTTTTATCAATAATACGTTTGCTACAGAACACTGGGAAGTCTTTTTTTTTGGGTTGTGATTGGCAAACGAATGTCTTTGAGATTTGATTTGATTTCACACGGAAAAGGTTTCAACACAGACATAAAATTGGATTTCTGGAGAAGAAGAAGAAGAATAAGGATGAGGGAGCAAACTGATTTTTGGAAGAAAGAGAGTGCAAGTTTTTCGAGTAAAAGAGGAGGAAGAGAAGAAAGTAGGAAGGCTGGAATTTCAAATCAAAAGACGATTTTGAAATGGTCTTAGAATTGGTAAGGAGTTCTGGAATACGAGATTAT</canonical>
            <polymorphic>TAGAGCCCTATCCTGCTTACCAAAAGTGCCGTACTAGATAATGATACCTAATTACCATGAAAGAGTCATATGGTTTCATGTGAGAATCCATCTACGAAAGTGCATGCCATTAGTCTGAATTGGACTTTTTCTGTCTGAATACGACTGATGGCATCTATTTAATTTTGAAAGTGAAAAGAATACGGTAGTAGTAGTATATAACTAAGATTGGTGTTAATTACTGAAATGGAGAAGGAAAAGGACATTGTGGAATGCTCTTGAGATAATGTGATTGATGAGAAAAAAAAGGGGGAAGAAGGGGTCCTTCGCAAAAAAAAGAGAGAAGAAGAATGTGCAAAAAATTCACAAATCAAATATTCCAGAAGATAGAGAAGAGAAGGATCTTCTAAAGGGAAAAGAATCATTCTTTTTTCACTTTGTAACACCGAAAAAAAAAACAAAAGAGGTGTCCGACGAGGCGTGGAATCGGAAAAGAAGAAATTTCGGGAAAGATACTTTTYGGTACAAAATGCCCGGGGAGTCTCAGTCTGTGCTCTATTTTATTTGAATGACCCAAATCTGAAGAGATATCAGCGAAATAGTGTGTCTGACGAAGAGACGCGGGCAGAATTGAACGGTAAATAAGTGTGAAGTACTGTATGGCGGTGGCGGGAAGTTGTGCAAAAGACACAACTTGTTAGTACTCTTTTTATCAATAATACGTTTGCTACAGAACACTGGGAAGTCTTTTTTTTTGGGTTGTGATTGGCAAACGAATGTCTTTGAGATTTGATTTGATTTCACACGGAAAAGGTTTCAACACAGACATAAAATTGGATTTCTGGAGAAGAAGAAGAAGAATAAGGATGAGGGAGCAAACTGATTTTTGGAAGAAAGAGAGTGCAAGTTTTTCGAGTAAAAGAGGAGGAAGAGAAGAAAGTAGGAAGGCTGGAATTTCAAATCAAAAGACGATTTTGAAATGGTCTTAGAATTGGTAAGGAGTTCTGGAATACGAGATTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTTCTAAAGGGAAAAGAATCA</pcr_primer_p1>
		<pcr_primer_p2>CACACTTATTTACCGTTCAATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCTTCTAAAGGGAAAAGAATCATTCTTTTTTCACTTTGTAACACCGAAAAAAAAAACAAAAGAGGTGTCCGACGAGGCGTGGAATCGGAAAAGAAGAAATTTCGGGAAAGATACTTTTCGGTACAAAATGCCCGGGGAGTCTCAGTCTGTGCTCTATTTTATTTGAATGACCCAAATCTGAAGAGATATCAGCGAAATAGTGTGTCTGACGAAGAGACGCGGGCAGAATTGAACGGTAAATAAGTGTG</canonical_amplicon>
		<polymorphic_amplicon>ATCTTCTAAAGGGAAAAGAATCATTCTTTTTTCACTTTGTAACACCGAAAAAAAAAACAAAAGAGGTGTCCGACGAGGCGTGGAATCGGAAAAGAAGAAATTTCGGGAAAGATACTTTTYGGTACAAAATGCCCGGGGAGTCTCAGTCTGTGCTCTATTTTATTTGAATGACCCAAATCTGAAGAGATATCAGCGAAATAGTGTGTCTGACGAAGAGACGCGGGCAGAATTGAACGGTAAATAAGTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27351</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>259199</contig_pos>
        <strand>+</strand>
        <context>GTACAAAATG[C/G]CCGGGGAGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGAATCGGAAAAGAAGAAATTTCGGGAAAGATACTTTTCGGTACAAAATG</left_flank>
        <right_flank>CCGGGGAGTCTCAGTCTGTGCTCTATTTTATTTGAATGACCCAAATCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGCTTACCAAAAGTGCCGTACTAGATAATGATACCTAATTACCATGAAAGAGTCATATGGTTTCATGTGAGAATCCATCTACGAAAGTGCATGCCATTAGTCTGAATTGGACTTTTTCTGTCTGAATACGACTGATGGCATCTATTTAATTTTGAAAGTGAAAAGAATACGGTAGTAGTAGTATATAACTAAGATTGGTGTTAATTACTGAAATGGAGAAGGAAAAGGACATTGTGGAATGCTCTTGAGATAATGTGATTGATGAGAAAAAAAAGGGGGAAGAAGGGGTCCTTCGCAAAAAAAAGAGAGAAGAAGAATGTGCAAAAAATTCACAAATCAAATATTCCAGAAGATAGAGAAGAGAAGGATCTTCTAAAGGGAAAAGAATCATTCTTTTTTCACTTTGTAACACCGAAAAAAAAAACAAAAGAGGTGTCCGACGAGGCGTGGAATCGGAAAAGAAGAAATTTCGGGAAAGATACTTTTCGGTACAAAATGCCCGGGGAGTCTCAGTCTGTGCTCTATTTTATTTGAATGACCCAAATCTGAAGAGATATCAGCGAAATAGTGTGTCTGACGAAGAGACGCGGGCAGAATTGAACGGTAAATAAGTGTGAAGTACTGTATGGCGGTGGCGGGAAGTTGTGCAAAAGACACAACTTGTTAGTACTCTTTTTATCAATAATACGTTTGCTACAGAACACTGGGAAGTCTTTTTTTTTGGGTTGTGATTGGCAAACGAATGTCTTTGAGATTTGATTTGATTTCACACGGAAAAGGTTTCAACACAGACATAAAATTGGATTTCTGGAGAAGAAGAAGAAGAATAAGGATGAGGGAGCAAACTGATTTTTGGAAGAAAGAGAGTGCAAGTTTTTCGAGTAAAAGAGGAGGAAGAGAAGAAAGTAGGAAGGCTGGAATTTCAAATCAAAAGACGATTTTGAAATGGTCTTAGAATTGGTAAGGAGTTCTGGAATACGAGATTATGATGACTTGTTT</canonical>
            <polymorphic>CTGCTTACCAAAAGTGCCGTACTAGATAATGATACCTAATTACCATGAAAGAGTCATATGGTTTCATGTGAGAATCCATCTACGAAAGTGCATGCCATTAGTCTGAATTGGACTTTTTCTGTCTGAATACGACTGATGGCATCTATTTAATTTTGAAAGTGAAAAGAATACGGTAGTAGTAGTATATAACTAAGATTGGTGTTAATTACTGAAATGGAGAAGGAAAAGGACATTGTGGAATGCTCTTGAGATAATGTGATTGATGAGAAAAAAAAGGGGGAAGAAGGGGTCCTTCGCAAAAAAAAGAGAGAAGAAGAATGTGCAAAAAATTCACAAATCAAATATTCCAGAAGATAGAGAAGAGAAGGATCTTCTAAAGGGAAAAGAATCATTCTTTTTTCACTTTGTAACACCGAAAAAAAAAACAAAAGAGGTGTCCGACGAGGCGTGGAATCGGAAAAGAAGAAATTTCGGGAAAGATACTTTTCGGTACAAAATGSCCGGGGAGTCTCAGTCTGTGCTCTATTTTATTTGAATGACCCAAATCTGAAGAGATATCAGCGAAATAGTGTGTCTGACGAAGAGACGCGGGCAGAATTGAACGGTAAATAAGTGTGAAGTACTGTATGGCGGTGGCGGGAAGTTGTGCAAAAGACACAACTTGTTAGTACTCTTTTTATCAATAATACGTTTGCTACAGAACACTGGGAAGTCTTTTTTTTTGGGTTGTGATTGGCAAACGAATGTCTTTGAGATTTGATTTGATTTCACACGGAAAAGGTTTCAACACAGACATAAAATTGGATTTCTGGAGAAGAAGAAGAAGAATAAGGATGAGGGAGCAAACTGATTTTTGGAAGAAAGAGAGTGCAAGTTTTTCGAGTAAAAGAGGAGGAAGAGAAGAAAGTAGGAAGGCTGGAATTTCAAATCAAAAGACGATTTTGAAATGGTCTTAGAATTGGTAAGGAGTTCTGGAATACGAGATTATGATGACTTGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>502 498</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>502 498</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>501 499</polymorphic_bands>
            </assay>
            <assay>
                <site>CCCGGG</site>
                <isoschizomers>
                    <enzyme>Cfr9I</enzyme>
                    <enzyme>PspAI</enzyme>
                    <enzyme>SmaI</enzyme>
                    <enzyme>XmaCI</enzyme>
                    <enzyme>XmaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTTCTAAAGGGAAAAGAATCA</pcr_primer_p1>
		<pcr_primer_p2>CACACTTATTTACCGTTCAATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCTTCTAAAGGGAAAAGAATCATTCTTTTTTCACTTTGTAACACCGAAAAAAAAAACAAAAGAGGTGTCCGACGAGGCGTGGAATCGGAAAAGAAGAAATTTCGGGAAAGATACTTTTCGGTACAAAATGCCCGGGGAGTCTCAGTCTGTGCTCTATTTTATTTGAATGACCCAAATCTGAAGAGATATCAGCGAAATAGTGTGTCTGACGAAGAGACGCGGGCAGAATTGAACGGTAAATAAGTGTG</canonical_amplicon>
		<polymorphic_amplicon>ATCTTCTAAAGGGAAAAGAATCATTCTTTTTTCACTTTGTAACACCGAAAAAAAAAACAAAAGAGGTGTCCGACGAGGCGTGGAATCGGAAAAGAAGAAATTTCGGGAAAGATACTTTTCGGTACAAAATGSCCGGGGAGTCTCAGTCTGTGCTCTATTTTATTTGAATGACCCAAATCTGAAGAGATATCAGCGAAATAGTGTGTCTGACGAAGAGACGCGGGCAGAATTGAACGGTAAATAAGTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27352</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>288917</contig_pos>
        <strand></strand>
        <context>tttatcaggt[G/T]gcggattgtt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CACTTTGTCCGAACATCATTTATCATAATATCTCCAATATTTTATCAGGT</left_flank>
        <right_flank>GCGGATTGTTGATATCTTTCACAAGAATCGACAAAATTTCAGACGCCTAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTAAAAGAGAAAAGACTGAAAATCAAGAAGGATAACTAGATGATCGAATCAAGAGCTAGTTTTGAACATATCTCCATATCCACATCTATGATCTTGAGGTTCAAAGAACTAGGAAAAATGAGGGTGGCCTGCTAAAATTAAATTTTCACATAAGCAGTTTCAAACAAACACTTATAAAAGATTCGGAAAACTGAATTTTTGATTTTATTAAGTTATTAAATACCTAGGATGTTTTTCAGCCTGTGAGTTTTCAAAAGTTTTTGCAAGCTTCTAGACACGGTTATCATAAAAATCAATTATATCTACCGTATTTTCTCTAATAGAAGTCAACCCAAACTGTCAACTTTGAGCTCAATTATCTCGATACCTGTAAATTATATCAAATATTTGTCAATTGATAAACTATCATTCTTATAATAAATAAATGAAGTTGCGTCTCTTTATTTCTCACTTTGTCCGAACATCATTTATCATAATATCTCCAATATTTTATCAGGTGGCGGATTGTTGATATCTTTCACAAGAATCGACAAAATTTCAGACGCCTATAACCATGTTACAAACGCCTTTCGTAACATTTTCCAGATTTCTTTTTTCTCTCTTTTTAAGATCTTCCGCCTATTTTTTTGCACTTTTCCATTTTTCCTTTTTTCCTCCTATTATCTAAAAAATGACGCACCTAAAATGATTTCGTGAAGAAAAGGCTAAAAAGTTCCTCCTTATTTTTTACGAAAAGCACTTTGGATTTAAACCCGTTCGAGCATTAAAGTGAAAGTGGAGAAGTGCAAAACCACTTTGCATTTTTTCGTATTTTCTTAAAGTTGAAAATGGAGAAAAAGAAACAGATTGGTTTCGTATTTCTTTTTGGAGAACACAAACCACCAAAAACCTACATAAAGAACTTTAAAAGGGGGATTCTGAAGTCCGTGCAGAAGTTAAAAAACCAAGAAGGGACAACCGGAAACTTGAAAAGTGAAACAAATAGTTTAGAAATATGAA</canonical>
            <polymorphic>GCTAAAAGAGAAAAGACTGAAAATCAAGAAGGATAACTAGATGATCGAATCAAGAGCTAGTTTTGAACATATCTCCATATCCACATCTATGATCTTGAGGTTCAAAGAACTAGGAAAAATGAGGGTGGCCTGCTAAAATTAAATTTTCACATAAGCAGTTTCAAACAAACACTTATAAAAGATTCGGAAAACTGAATTTTTGATTTTATTAAGTTATTAAATACCTAGGATGTTTTTCAGCCTGTGAGTTTTCAAAAGTTTTTGCAAGCTTCTAGACACGGTTATCATAAAAATCAATTATATCTACCGTATTTTCTCTAATAGAAGTCAACCCAAACTGTCAACTTTGAGCTCAATTATCTCGATACCTGTAAATTATATCAAATATTTGTCAATTGATAAACTATCATTCTTATAATAAATAAATGAAGTTGCGTCTCTTTATTTCTCACTTTGTCCGAACATCATTTATCATAATATCTCCAATATTTTATCAGGTKGCGGATTGTTGATATCTTTCACAAGAATCGACAAAATTTCAGACGCCTATAACCATGTTACAAACGCCTTTCGTAACATTTTCCAGATTTCTTTTTTCTCTCTTTTTAAGATCTTCCGCCTATTTTTTTGCACTTTTCCATTTTTCCTTTTTTCCTCCTATTATCTAAAAAATGACGCACCTAAAATGATTTCGTGAAGAAAAGGCTAAAAAGTTCCTCCTTATTTTTTACGAAAAGCACTTTGGATTTAAACCCGTTCGAGCATTAAAGTGAAAGTGGAGAAGTGCAAAACCACTTTGCATTTTTTCGTATTTTCTTAAAGTTGAAAATGGAGAAAAAGAAACAGATTGGTTTCGTATTTCTTTTTGGAGAACACAAACCACCAAAAACCTACATAAAGAACTTTAAAAGGGGGATTCTGAAGTCCGTGCAGAAGTTAAAAAACCAAGAAGGGACAACCGGAAACTTGAAAAGTGAAACAAATAGTTTAGAAATATGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>500 384 116</canonical_bands>
                <polymorphic_bands>616 384</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>173 111 83 81 75 49 48 47 46 44 43 33 32 24 22 22 21 17 8 8 7 6</canonical_bands>
                <polymorphic_bands>173 111 83 81 75 70 48 47 46 44 43 33 32 24 22 22 17 8 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACGGTTATCATAAAAATCAATTA</pcr_primer_p1>
		<pcr_primer_p2>TAACATGGTTATAGGCGTCTG</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>CACGGTTATCATAAAAATCAATTATATCTACCGTATTTTCTCTAATAGAAGTCAACCCAAACTGTCAACTTTGAGCTCAATTATCTCGATACCTGTAAATTATATCAAATATTTGTCAATTGATAAACTATCATTCTTATAATAAATAAATGAAGTTGCGTCTCTTTATTTCTCACTTTGTCCGAACATCATTTATCATAATATCTCCAATATTTTATCAGGTGGCGGATTGTTGATATCTTTCACAAGAATCGACAAAATTTCAGACGCCTATAACCATGTTA</canonical_amplicon>
		<polymorphic_amplicon>CACGGTTATCATAAAAATCAATTATATCTACCGTATTTTCTCTAATAGAAGTCAACCCAAACTGTCAACTTTGAGCTCAATTATCTCGATACCTGTAAATTATATCAAATATTTGTCAATTGATAAACTATCATTCTTATAATAAATAAATGAAGTTGCGTCTCTTTATTTCTCACTTTGTCCGAACATCATTTATCATAATATCTCCAATATTTTATCAGGTKGCGGATTGTTGATATCTTTCACAAGAATCGACAAAATTTCAGACGCCTATAACCATGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27353</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>290687</contig_pos>
        <strand></strand>
        <context>aaatgtgaaa[A/T]acagatattt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATCCAAAAATTCCTAAAGATTCAGAAAAAAAAATTGGAAATGTGAAA</left_flank>
        <right_flank>ACAGATATTTTCGAGTTAGGGATTTGAGAATTTCGTAATTTCGAGATTTC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGTGTTTCCGGTTCCACAACCCTAGCGAAGTCCCCAGTAGACCAAAAACTTTCAAATTTTCACAGATGATCCAAAATAGCAGCGAGATGATGCCCGTCTATTTTCAATTTCGAAAATTTGTTTCTGACGTCTTCTGGAGACGTTCTTCTATTTCTACAGTGCAAATCTTTCGAAAATAATATTTACGTCATTCGTTCAAAGAGATGGAAAAAACTGAATAAACGGGGGAAATGAGAATGAGAAGAAAAATACGAGCGCGCTTACTAGAATTTCGAGTTCGCCCGGACTTCGAATTCTAAGGATATGCGAATTTTTCAATTTTTCAATTTTCCATTACCGAATTGCTGAATTTGGAATCTGAAGTCTTTGAAATTCAGATTAATTCAGAAAACATCGGAACTCGAAAAATTCTCAAACTTTGAAATTCTGAAATTTGAGTTCGAGATCTAAAATCCAAAAATTCCTAAAGATTCAGAAAAAAAAATTGGAAATGTGAAAAACAGATATTTTCGAGTTAGGGATTTGAGAATTTCGTAATTTCGAGATTTCCTAACTTTCTAGATTCATAGTAACAGGAAATTTCAGAATCTTCCTAAGTTCGGAATAGCTAAGTTTCCGAATTTCAAGCGTTAAAAGTTTCTGAATTTTTGAATGTCAATGATCTGTAATTCAGATTTCCAAACTTTTAAACTTCGGGATTTCAAATTTCGATGTTTTTATGATTTAACCGTGCTTTTTTTTACTACAAATTTCCGATTTCCAAATATCTGAATTTCTGTAAATTTGAATATTTCAAGGCTTATTGAATATACGAAATTTTAACTTTTTGAACGTCTGAATTTCCGAACATCCAAAATGTAGAAATCAAAGAAATTTCAGAAAATTATAAAAAACCTTTGAATTTTTTTGGGAAAAACTTGGAAATAAGAATATTCAAAAAATCACAGAGTTTTAGGAAGTCGACAATTTCTCAATTTCTCAATTTCAATTTTCCAAACA</canonical>
            <polymorphic>CGGTGTTTCCGGTTCCACAACCCTAGCGAAGTCCCCAGTAGACCAAAAACTTTCAAATTTTCACAGATGATCCAAAATAGCAGCGAGATGATGCCCGTCTATTTTCAATTTCGAAAATTTGTTTCTGACGTCTTCTGGAGACGTTCTTCTATTTCTACAGTGCAAATCTTTCGAAAATAATATTTACGTCATTCGTTCAAAGAGATGGAAAAAACTGAATAAACGGGGGAAATGAGAATGAGAAGAAAAATACGAGCGCGCTTACTAGAATTTCGAGTTCGCCCGGACTTCGAATTCTAAGGATATGCGAATTTTTCAATTTTTCAATTTTCCATTACCGAATTGCTGAATTTGGAATCTGAAGTCTTTGAAATTCAGATTAATTCAGAAAACATCGGAACTCGAAAAATTCTCAAACTTTGAAATTCTGAAATTTGAGTTCGAGATCTAAAATCCAAAAATTCCTAAAGATTCAGAAAAAAAAATTGGAAATGTGAAAWACAGATATTTTCGAGTTAGGGATTTGAGAATTTCGTAATTTCGAGATTTCCTAACTTTCTAGATTCATAGTAACAGGAAATTTCAGAATCTTCCTAAGTTCGGAATAGCTAAGTTTCCGAATTTCAAGCGTTAAAAGTTTCTGAATTTTTGAATGTCAATGATCTGTAATTCAGATTTCCAAACTTTTAAACTTCGGGATTTCAAATTTCGATGTTTTTATGATTTAACCGTGCTTTTTTTTACTACAAATTTCCGATTTCCAAATATCTGAATTTCTGTAAATTTGAATATTTCAAGGCTTATTGAATATACGAAATTTTAACTTTTTGAACGTCTGAATTTCCGAACATCCAAAATGTAGAAATCAAAGAAATTTCAGAAAATTATAAAAAACCTTTGAATTTTTTTGGGAAAAACTTGGAAATAAGAATATTCAAAAAATCACAGAGTTTTAGGAAGTCGACAATTTCTCAATTTCTCAATTTCAATTTTCCAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAATTTTTCAATTTTCCATTAC</pcr_primer_p1>
		<pcr_primer_p2>TGAAATTTCCTGTTACTATGAATC</pcr_primer_p2>
		<pcr_amplicon_size>270</pcr_amplicon_size>
		<canonical_amplicon>TCAATTTTTCAATTTTCCATTACCGAATTGCTGAATTTGGAATCTGAAGTCTTTGAAATTCAGATTAATTCAGAAAACATCGGAACTCGAAAAATTCTCAAACTTTGAAATTCTGAAATTTGAGTTCGAGATCTAAAATCCAAAAATTCCTAAAGATTCAGAAAAAAAAATTGGAAATGTGAAAAACAGATATTTTCGAGTTAGGGATTTGAGAATTTCGTAATTTCGAGATTTCCTAACTTTCTAGATTCATAGTAACAGGAAATTTCA</canonical_amplicon>
		<polymorphic_amplicon>TCAATTTTTCAATTTTCCATTACCGAATTGCTGAATTTGGAATCTGAAGTCTTTGAAATTCAGATTAATTCAGAAAACATCGGAACTCGAAAAATTCTCAAACTTTGAAATTCTGAAATTTGAGTTCGAGATCTAAAATCCAAAAATTCCTAAAGATTCAGAAAAAAAAATTGGAAATGTGAAAWACAGATATTTTCGAGTTAGGGATTTGAGAATTTCGTAATTTCGAGATTTCCTAACTTTCTAGATTCATAGTAACAGGAAATTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27354</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>290861</contig_pos>
        <strand>+</strand>
        <context>CTGTAATTCA[C/G]ATTTCCAAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCAAGCGTTAAAAGTTTCTGAATTTTTGAATGTCAATGATCTGTAATTCA</left_flank>
        <right_flank>ATTTCCAAACTTTTAAACTTCGGGATTTCAAATTTCGATGTTTTTATGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATAATATTTACGTCATTCGTTCAAAGAGATGGAAAAAACTGAATAAACGGGGGAAATGAGAATGAGAAGAAAAATACGAGCGCGCTTACTAGAATTTCGAGTTCGCCCGGACTTCGAATTCTAAGGATATGCGAATTTTTCAATTTTTCAATTTTCCATTACCGAATTGCTGAATTTGGAATCTGAAGTCTTTGAAATTCAGATTAATTCAGAAAACATCGGAACTCGAAAAATTCTCAAACTTTGAAATTCTGAAATTTGAGTTCGAGATCTAAAATCCAAAAATTCCTAAAGATTCAGAAAAAAAAATTGGAAATGTGAAAAACAGATATTTTCGAGTTAGGGATTTGAGAATTTCGTAATTTCGAGATTTCCTAACTTTCTAGATTCATAGTAACAGGAAATTTCAGAATCTTCCTAAGTTCGGAATAGCTAAGTTTCCGAATTTCAAGCGTTAAAAGTTTCTGAATTTTTGAATGTCAATGATCTGTAATTCAGATTTCCAAACTTTTAAACTTCGGGATTTCAAATTTCGATGTTTTTATGATTTAACCGTGCTTTTTTTTACTACAAATTTCCGATTTCCAAATATCTGAATTTCTGTAAATTTGAATATTTCAAGGCTTATTGAATATACGAAATTTTAACTTTTTGAACGTCTGAATTTCCGAACATCCAAAATGTAGAAATCAAAGAAATTTCAGAAAATTATAAAAAACCTTTGAATTTTTTTGGGAAAAACTTGGAAATAAGAATATTCAAAAAATCACAGAGTTTTAGGAAGTCGACAATTTCTCAATTTCTCAATTTCAATTTTCCAAACATCAGAATTTGAAACGTTGAGATTTTAGAGTTGCAGAATTCATAAAAATTCAAAAGTCGGAATTCCTGCATCCCTAACTTCAGAATAGTTCAGATTCTGAATATTCGAATGTTCATATTCTCAGTTTTTCAAACATCCAAATTTCAGTGATCGATTTCCTGACTTTTGGAATTTC</canonical>
            <polymorphic>AAATAATATTTACGTCATTCGTTCAAAGAGATGGAAAAAACTGAATAAACGGGGGAAATGAGAATGAGAAGAAAAATACGAGCGCGCTTACTAGAATTTCGAGTTCGCCCGGACTTCGAATTCTAAGGATATGCGAATTTTTCAATTTTTCAATTTTCCATTACCGAATTGCTGAATTTGGAATCTGAAGTCTTTGAAATTCAGATTAATTCAGAAAACATCGGAACTCGAAAAATTCTCAAACTTTGAAATTCTGAAATTTGAGTTCGAGATCTAAAATCCAAAAATTCCTAAAGATTCAGAAAAAAAAATTGGAAATGTGAAAAACAGATATTTTCGAGTTAGGGATTTGAGAATTTCGTAATTTCGAGATTTCCTAACTTTCTAGATTCATAGTAACAGGAAATTTCAGAATCTTCCTAAGTTCGGAATAGCTAAGTTTCCGAATTTCAAGCGTTAAAAGTTTCTGAATTTTTGAATGTCAATGATCTGTAATTCASATTTCCAAACTTTTAAACTTCGGGATTTCAAATTTCGATGTTTTTATGATTTAACCGTGCTTTTTTTTACTACAAATTTCCGATTTCCAAATATCTGAATTTCTGTAAATTTGAATATTTCAAGGCTTATTGAATATACGAAATTTTAACTTTTTGAACGTCTGAATTTCCGAACATCCAAAATGTAGAAATCAAAGAAATTTCAGAAAATTATAAAAAACCTTTGAATTTTTTTGGGAAAAACTTGGAAATAAGAATATTCAAAAAATCACAGAGTTTTAGGAAGTCGACAATTTCTCAATTTCTCAATTTCAATTTTCCAAACATCAGAATTTGAAACGTTGAGATTTTAGAGTTGCAGAATTCATAAAAATTCAAAAGTCGGAATTCCTGCATCCCTAACTTCAGAATAGTTCAGATTCTGAATATTCGAATGTTCATATTCTCAGTTTTTCAAACATCCAAATTTCAGTGATCGATTTCCTGACTTTTGGAATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>186 124 110 82 77 67 55 46 34 32 31 24 23 17 17 16 15 10 10 10 8 6</canonical_bands>
                <polymorphic_bands>186 124 113 110 77 67 55 46 34 32 24 23 17 17 16 15 10 10 10 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGGGATTTGAGAATTTCGTA</pcr_primer_p1>
		<pcr_primer_p2>GGAAATCGGAAATTTGTAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTAGGGATTTGAGAATTTCGTAATTTCGAGATTTCCTAACTTTCTAGATTCATAGTAACAGGAAATTTCAGAATCTTCCTAAGTTCGGAATAGCTAAGTTTCCGAATTTCAAGCGTTAAAAGTTTCTGAATTTTTGAATGTCAATGATCTGTAATTCAGATTTCCAAACTTTTAAACTTCGGGATTTCAAATTTCGATGTTTTTATGATTTAACCGTGCTTTTTTTTACTACAAATTTCCGATTTCC</canonical_amplicon>
		<polymorphic_amplicon>TTAGGGATTTGAGAATTTCGTAATTTCGAGATTTCCTAACTTTCTAGATTCATAGTAACAGGAAATTTCAGAATCTTCCTAAGTTCGGAATAGCTAAGTTTCCGAATTTCAAGCGTTAAAAGTTTCTGAATTTTTGAATGTCAATGATCTGTAATTCASATTTCCAAACTTTTAAACTTCGGGATTTCAAATTTCGATGTTTTTATGATTTAACCGTGCTTTTTTTTACTACAAATTTCCGATTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27355</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>290876</contig_pos>
        <strand>+</strand>
        <context>CCAAACTTTT[A/T]AAYTTCGGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCTGAATTTTTGAATGTCAATGATCTGTAATTCAGATTTCCAAACTTTT</left_flank>
        <right_flank>AACTTCGGGATTTCAAATTTCGATGTTTTTATGATTTAACCGTGCTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTCGTTCAAAGAGATGGAAAAAACTGAATAAACGGGGGAAATGAGAATGAGAAGAAAAATACGAGCGCGCTTACTAGAATTTCGAGTTCGCCCGGACTTCGAATTCTAAGGATATGCGAATTTTTCAATTTTTCAATTTTCCATTACCGAATTGCTGAATTTGGAATCTGAAGTCTTTGAAATTCAGATTAATTCAGAAAACATCGGAACTCGAAAAATTCTCAAACTTTGAAATTCTGAAATTTGAGTTCGAGATCTAAAATCCAAAAATTCCTAAAGATTCAGAAAAAAAAATTGGAAATGTGAAAAACAGATATTTTCGAGTTAGGGATTTGAGAATTTCGTAATTTCGAGATTTCCTAACTTTCTAGATTCATAGTAACAGGAAATTTCAGAATCTTCCTAAGTTCGGAATAGCTAAGTTTCCGAATTTCAAGCGTTAAAAGTTTCTGAATTTTTGAATGTCAATGATCTGTAATTCAGATTTCCAAACTTTTAAACTTCGGGATTTCAAATTTCGATGTTTTTATGATTTAACCGTGCTTTTTTTTACTACAAATTTCCGATTTCCAAATATCTGAATTTCTGTAAATTTGAATATTTCAAGGCTTATTGAATATACGAAATTTTAACTTTTTGAACGTCTGAATTTCCGAACATCCAAAATGTAGAAATCAAAGAAATTTCAGAAAATTATAAAAAACCTTTGAATTTTTTTGGGAAAAACTTGGAAATAAGAATATTCAAAAAATCACAGAGTTTTAGGAAGTCGACAATTTCTCAATTTCTCAATTTCAATTTTCCAAACATCAGAATTTGAAACGTTGAGATTTTAGAGTTGCAGAATTCATAAAAATTCAAAAGTCGGAATTCCTGCATCCCTAACTTCAGAATAGTTCAGATTCTGAATATTCGAATGTTCATATTCTCAGTTTTTCAAACATCCAAATTTCAGTGATCGATTTCCTGACTTTTGGAATTTCTAATTGTCAAGTTTA</canonical>
            <polymorphic>CATTCGTTCAAAGAGATGGAAAAAACTGAATAAACGGGGGAAATGAGAATGAGAAGAAAAATACGAGCGCGCTTACTAGAATTTCGAGTTCGCCCGGACTTCGAATTCTAAGGATATGCGAATTTTTCAATTTTTCAATTTTCCATTACCGAATTGCTGAATTTGGAATCTGAAGTCTTTGAAATTCAGATTAATTCAGAAAACATCGGAACTCGAAAAATTCTCAAACTTTGAAATTCTGAAATTTGAGTTCGAGATCTAAAATCCAAAAATTCCTAAAGATTCAGAAAAAAAAATTGGAAATGTGAAAAACAGATATTTTCGAGTTAGGGATTTGAGAATTTCGTAATTTCGAGATTTCCTAACTTTCTAGATTCATAGTAACAGGAAATTTCAGAATCTTCCTAAGTTCGGAATAGCTAAGTTTCCGAATTTCAAGCGTTAAAAGTTTCTGAATTTTTGAATGTCAATGATCTGTAATTCAGATTTCCAAACTTTTWAACTTCGGGATTTCAAATTTCGATGTTTTTATGATTTAACCGTGCTTTTTTTTACTACAAATTTCCGATTTCCAAATATCTGAATTTCTGTAAATTTGAATATTTCAAGGCTTATTGAATATACGAAATTTTAACTTTTTGAACGTCTGAATTTCCGAACATCCAAAATGTAGAAATCAAAGAAATTTCAGAAAATTATAAAAAACCTTTGAATTTTTTTGGGAAAAACTTGGAAATAAGAATATTCAAAAAATCACAGAGTTTTAGGAAGTCGACAATTTCTCAATTTCTCAATTTCAATTTTCCAAACATCAGAATTTGAAACGTTGAGATTTTAGAGTTGCAGAATTCATAAAAATTCAAAAGTCGGAATTCCTGCATCCCTAACTTCAGAATAGTTCAGATTCTGAATATTCGAATGTTCATATTCTCAGTTTTTCAAACATCCAAATTTCAGTGATCGATTTCCTGACTTTTGGAATTTCTAATTGTCAAGTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>369 251 191 95 56 38</canonical_bands>
                <polymorphic_bands>369 251 191 95 94</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGGGATTTGAGAATTTCGTA</pcr_primer_p1>
		<pcr_primer_p2>GGAAATCGGAAATTTGTAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTAGGGATTTGAGAATTTCGTAATTTCGAGATTTCCTAACTTTCTAGATTCATAGTAACAGGAAATTTCAGAATCTTCCTAAGTTCGGAATAGCTAAGTTTCCGAATTTCAAGCGTTAAAAGTTTCTGAATTTTTGAATGTCAATGATCTGTAATTCAGATTTCCAAACTTTTAAACTTCGGGATTTCAAATTTCGATGTTTTTATGATTTAACCGTGCTTTTTTTTACTACAAATTTCCGATTTCC</canonical_amplicon>
		<polymorphic_amplicon>TTAGGGATTTGAGAATTTCGTAATTTCGAGATTTCCTAACTTTCTAGATTCATAGTAACAGGAAATTTCAGAATCTTCCTAAGTTCGGAATAGCTAAGTTTCCGAATTTCAAGCGTTAAAAGTTTCTGAATTTTTGAATGTCAATGATCTGTAATTCAGATTTCCAAACTTTTWAACTTCGGGATTTCAAATTTCGATGTTTTTATGATTTAACCGTGCTTTTTTTTACTACAAATTTCCGATTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27356</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>290879</contig_pos>
        <strand>+</strand>
        <context>AACTTTTWAA[C/T]TTCGGGATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAATTTTTGAATGTCAATGATCTGTAATTCAGATTTCCAAACTTTTAAA</left_flank>
        <right_flank>TTCGGGATTTCAAATTTCGATGTTTTTATGATTTAACCGTGCTTTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTTCAAAGAGATGGAAAAAACTGAATAAACGGGGGAAATGAGAATGAGAAGAAAAATACGAGCGCGCTTACTAGAATTTCGAGTTCGCCCGGACTTCGAATTCTAAGGATATGCGAATTTTTCAATTTTTCAATTTTCCATTACCGAATTGCTGAATTTGGAATCTGAAGTCTTTGAAATTCAGATTAATTCAGAAAACATCGGAACTCGAAAAATTCTCAAACTTTGAAATTCTGAAATTTGAGTTCGAGATCTAAAATCCAAAAATTCCTAAAGATTCAGAAAAAAAAATTGGAAATGTGAAAAACAGATATTTTCGAGTTAGGGATTTGAGAATTTCGTAATTTCGAGATTTCCTAACTTTCTAGATTCATAGTAACAGGAAATTTCAGAATCTTCCTAAGTTCGGAATAGCTAAGTTTCCGAATTTCAAGCGTTAAAAGTTTCTGAATTTTTGAATGTCAATGATCTGTAATTCAGATTTCCAAACTTTTAAACTTCGGGATTTCAAATTTCGATGTTTTTATGATTTAACCGTGCTTTTTTTTACTACAAATTTCCGATTTCCAAATATCTGAATTTCTGTAAATTTGAATATTTCAAGGCTTATTGAATATACGAAATTTTAACTTTTTGAACGTCTGAATTTCCGAACATCCAAAATGTAGAAATCAAAGAAATTTCAGAAAATTATAAAAAACCTTTGAATTTTTTTGGGAAAAACTTGGAAATAAGAATATTCAAAAAATCACAGAGTTTTAGGAAGTCGACAATTTCTCAATTTCTCAATTTCAATTTTCCAAACATCAGAATTTGAAACGTTGAGATTTTAGAGTTGCAGAATTCATAAAAATTCAAAAGTCGGAATTCCTGCATCCCTAACTTCAGAATAGTTCAGATTCTGAATATTCGAATGTTCATATTCTCAGTTTTTCAAACATCCAAATTTCAGTGATCGATTTCCTGACTTTTGGAATTTCTAATTGTCAAGTTTATGA</canonical>
            <polymorphic>TCGTTCAAAGAGATGGAAAAAACTGAATAAACGGGGGAAATGAGAATGAGAAGAAAAATACGAGCGCGCTTACTAGAATTTCGAGTTCGCCCGGACTTCGAATTCTAAGGATATGCGAATTTTTCAATTTTTCAATTTTCCATTACCGAATTGCTGAATTTGGAATCTGAAGTCTTTGAAATTCAGATTAATTCAGAAAACATCGGAACTCGAAAAATTCTCAAACTTTGAAATTCTGAAATTTGAGTTCGAGATCTAAAATCCAAAAATTCCTAAAGATTCAGAAAAAAAAATTGGAAATGTGAAAAACAGATATTTTCGAGTTAGGGATTTGAGAATTTCGTAATTTCGAGATTTCCTAACTTTCTAGATTCATAGTAACAGGAAATTTCAGAATCTTCCTAAGTTCGGAATAGCTAAGTTTCCGAATTTCAAGCGTTAAAAGTTTCTGAATTTTTGAATGTCAATGATCTGTAATTCAGATTTCCAAACTTTTAAAYTTCGGGATTTCAAATTTCGATGTTTTTATGATTTAACCGTGCTTTTTTTTACTACAAATTTCCGATTTCCAAATATCTGAATTTCTGTAAATTTGAATATTTCAAGGCTTATTGAATATACGAAATTTTAACTTTTTGAACGTCTGAATTTCCGAACATCCAAAATGTAGAAATCAAAGAAATTTCAGAAAATTATAAAAAACCTTTGAATTTTTTTGGGAAAAACTTGGAAATAAGAATATTCAAAAAATCACAGAGTTTTAGGAAGTCGACAATTTCTCAATTTCTCAATTTCAATTTTCCAAACATCAGAATTTGAAACGTTGAGATTTTAGAGTTGCAGAATTCATAAAAATTCAAAAGTCGGAATTCCTGCATCCCTAACTTCAGAATAGTTCAGATTCTGAATATTCGAATGTTCATATTCTCAGTTTTTCAAACATCCAAATTTCAGTGATCGATTTCCTGACTTTTGGAATTTCTAATTGTCAAGTTTATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGGGATTTGAGAATTTCGTA</pcr_primer_p1>
		<pcr_primer_p2>GGAAATCGGAAATTTGTAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTAGGGATTTGAGAATTTCGTAATTTCGAGATTTCCTAACTTTCTAGATTCATAGTAACAGGAAATTTCAGAATCTTCCTAAGTTCGGAATAGCTAAGTTTCCGAATTTCAAGCGTTAAAAGTTTCTGAATTTTTGAATGTCAATGATCTGTAATTCAGATTTCCAAACTTTTAAACTTCGGGATTTCAAATTTCGATGTTTTTATGATTTAACCGTGCTTTTTTTTACTACAAATTTCCGATTTCC</canonical_amplicon>
		<polymorphic_amplicon>TTAGGGATTTGAGAATTTCGTAATTTCGAGATTTCCTAACTTTCTAGATTCATAGTAACAGGAAATTTCAGAATCTTCCTAAGTTCGGAATAGCTAAGTTTCCGAATTTCAAGCGTTAAAAGTTTCTGAATTTTTGAATGTCAATGATCTGTAATTCAGATTTCCAAACTTTTAAAYTTCGGGATTTCAAATTTCGATGTTTTTATGATTTAACCGTGCTTTTTTTTACTACAAATTTCCGATTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27357</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>290952</contig_pos>
        <strand>+</strand>
        <context>CGATTTCCAA[A/T]TATCtgaatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTATGATTTAACCGTGCTTTTTTTTACTACAAATTTCCGATTTCCAA</left_flank>
        <right_flank>TATCTGAATTTCTGTAAATTTGAATATTTCAAGGCTTATTGAATATACGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAATTTCGAGTTCGCCCGGACTTCGAATTCTAAGGATATGCGAATTTTTCAATTTTTCAATTTTCCATTACCGAATTGCTGAATTTGGAATCTGAAGTCTTTGAAATTCAGATTAATTCAGAAAACATCGGAACTCGAAAAATTCTCAAACTTTGAAATTCTGAAATTTGAGTTCGAGATCTAAAATCCAAAAATTCCTAAAGATTCAGAAAAAAAAATTGGAAATGTGAAAAACAGATATTTTCGAGTTAGGGATTTGAGAATTTCGTAATTTCGAGATTTCCTAACTTTCTAGATTCATAGTAACAGGAAATTTCAGAATCTTCCTAAGTTCGGAATAGCTAAGTTTCCGAATTTCAAGCGTTAAAAGTTTCTGAATTTTTGAATGTCAATGATCTGTAATTCAGATTTCCAAACTTTTAAACTTCGGGATTTCAAATTTCGATGTTTTTATGATTTAACCGTGCTTTTTTTTACTACAAATTTCCGATTTCCAAATATCTGAATTTCTGTAAATTTGAATATTTCAAGGCTTATTGAATATACGAAATTTTAACTTTTTGAACGTCTGAATTTCCGAACATCCAAAATGTAGAAATCAAAGAAATTTCAGAAAATTATAAAAAACCTTTGAATTTTTTTGGGAAAAACTTGGAAATAAGAATATTCAAAAAATCACAGAGTTTTAGGAAGTCGACAATTTCTCAATTTCTCAATTTCAATTTTCCAAACATCAGAATTTGAAACGTTGAGATTTTAGAGTTGCAGAATTCATAAAAATTCAAAAGTCGGAATTCCTGCATCCCTAACTTCAGAATAGTTCAGATTCTGAATATTCGAATGTTCATATTCTCAGTTTTTCAAACATCCAAATTTCAGTGATCGATTTCCTGACTTTTGGAATTTCTAATTGTCAAGTTTATGAAGGTTAAAAACTGCCGCAATCAAATGGAAATTCATTTTCTATTTCTCTCCGGTTTTGAGATTCAAGTGAAGCC</canonical>
            <polymorphic>TAGAATTTCGAGTTCGCCCGGACTTCGAATTCTAAGGATATGCGAATTTTTCAATTTTTCAATTTTCCATTACCGAATTGCTGAATTTGGAATCTGAAGTCTTTGAAATTCAGATTAATTCAGAAAACATCGGAACTCGAAAAATTCTCAAACTTTGAAATTCTGAAATTTGAGTTCGAGATCTAAAATCCAAAAATTCCTAAAGATTCAGAAAAAAAAATTGGAAATGTGAAAAACAGATATTTTCGAGTTAGGGATTTGAGAATTTCGTAATTTCGAGATTTCCTAACTTTCTAGATTCATAGTAACAGGAAATTTCAGAATCTTCCTAAGTTCGGAATAGCTAAGTTTCCGAATTTCAAGCGTTAAAAGTTTCTGAATTTTTGAATGTCAATGATCTGTAATTCAGATTTCCAAACTTTTAAACTTCGGGATTTCAAATTTCGATGTTTTTATGATTTAACCGTGCTTTTTTTTACTACAAATTTCCGATTTCCAAWTATCTGAATTTCTGTAAATTTGAATATTTCAAGGCTTATTGAATATACGAAATTTTAACTTTTTGAACGTCTGAATTTCCGAACATCCAAAATGTAGAAATCAAAGAAATTTCAGAAAATTATAAAAAACCTTTGAATTTTTTTGGGAAAAACTTGGAAATAAGAATATTCAAAAAATCACAGAGTTTTAGGAAGTCGACAATTTCTCAATTTCTCAATTTCAATTTTCCAAACATCAGAATTTGAAACGTTGAGATTTTAGAGTTGCAGAATTCATAAAAATTCAAAAGTCGGAATTCCTGCATCCCTAACTTCAGAATAGTTCAGATTCTGAATATTCGAATGTTCATATTCTCAGTTTTTCAAACATCCAAATTTCAGTGATCGATTTCCTGACTTTTGGAATTTCTAATTGTCAAGTTTATGAAGGTTAAAAACTGCCGCAATCAAATGGAAATTCATTTTCTATTTCTCTCCGGTTTTGAGATTCAAGTGAAGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAATTTCGATGTTTTTATGAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAATATTCTTATTTCCAAGT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TCAAATTTCGATGTTTTTATGATTTAACCGTGCTTTTTTTTACTACAAATTTCCGATTTCCAAATATCTGAATTTCTGTAAATTTGAATATTTCAAGGCTTATTGAATATACGAAATTTTAACTTTTTGAACGTCTGAATTTCCGAACATCCAAAATGTAGAAATCAAAGAAATTTCAGAAAATTATAAAAAACCTTTGAATTTTTTTGGGAAAAACTTGGAAATAAGAATATTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCAAATTTCGATGTTTTTATGATTTAACCGTGCTTTTTTTTACTACAAATTTCCGATTTCCAAWTATCTGAATTTCTGTAAATTTGAATATTTCAAGGCTTATTGAATATACGAAATTTTAACTTTTTGAACGTCTGAATTTCCGAACATCCAAAATGTAGAAATCAAAGAAATTTCAGAAAATTATAAAAAACCTTTGAATTTTTTTGGGAAAAACTTGGAAATAAGAATATTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27358</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>324923</contig_pos>
        <strand>+</strand>
        <context>GTTGTTGACA[G/T]CTTYTGTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAGGCTACAAAGTCTTGTTAAAAATATACATAGATTTTGGTTGTTGACA</left_flank>
        <right_flank>CTTTTGTTTTCTGTTTTTCTTTGAACTTGTACAGTGATAAAGATAATGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACTTCAAGTGACATATCTTCAAGTTTCCTTCAAGCAGGCGCGTAGCCTATTTTTCTAAATATTTGAAAAAATTCTAAATATTTAGACTTTTATGTTTTGCACAATAACTTATTCATGTTATTATATTACATACCGTAAACACTCTAAATGCCACCCAAACCCCCAACTTTGAGCTCATATATCTCGGTTTTTACAGAAGATATCAAAAAATGGTCAACTGACAAAATTTTTTTATATTATGATAAAAATTTTGTCAGTTGAGCACTTTTTGATGTCGTCTACAGAAACCGAGACAATTGAGCTCGAAGTGCACGTATAGGGTGAGCTTCTATTAGAGTGTTTACGGTATTTCAAAATTCGAACTTTTGCCCTTGTCTGAAGTGCTGAACCAATTTCTTATGAACGGCTAAAAATGAGACTAGTTTGATCATCAAAATAGTAGGACAATGAGGCTACAAAGTCTTGTTAAAAATATACATAGATTTTGGTTGTTGACAGCTTTTGTTTTCTGTTTTTCTTTGAACTTGTACAGTGATAAAGATAATGAGAAATACCAAGAAGAGGAGATAAAATAGAATAGATAATTATAGACCAAACATGATTCATATGAATAGAATAGGACGAGATCTGAAGCAATTGAAACATCGAATTTCTTGAAATTTAAGTATTTCTTCCTGATGTTTTGAACATTTCTCTCCAAAACTCCTCTACCCGGCACCAATAAAACTCATAATTTTATTTCAACAAATGCTACAAAATGTTGTTTATTTGAATTTGAAATTGGTAGTCAAAGTGTGATATCAATATGAATTTCAAGATATCATTTTATCACGAAAACAATGCATTTTTGGACTTGAAAACAATCGTTGAAATTTTCAGTTTGACACTTCGTGCGCGTGCTGGAAGTACACCAGGACTGGACAGCAAGCAAATGAATTCGTTGATTAATAAGAATAACACTTTCAGTCGGATGTTGTGTAAAGACTCGGATACTGTCG</canonical>
            <polymorphic>CAACTTCAAGTGACATATCTTCAAGTTTCCTTCAAGCAGGCGCGTAGCCTATTTTTCTAAATATTTGAAAAAATTCTAAATATTTAGACTTTTATGTTTTGCACAATAACTTATTCATGTTATTATATTACATACCGTAAACACTCTAAATGCCACCCAAACCCCCAACTTTGAGCTCATATATCTCGGTTTTTACAGAAGATATCAAAAAATGGTCAACTGACAAAATTTTTTTATATTATGATAAAAATTTTGTCAGTTGAGCACTTTTTGATGTCGTCTACAGAAACCGAGACAATTGAGCTCGAAGTGCACGTATAGGGTGAGCTTCTATTAGAGTGTTTACGGTATTTCAAAATTCGAACTTTTGCCCTTGTCTGAAGTGCTGAACCAATTTCTTATGAACGGCTAAAAATGAGACTAGTTTGATCATCAAAATAGTAGGACAATGAGGCTACAAAGTCTTGTTAAAAATATACATAGATTTTGGTTGTTGACAKCTTTTGTTTTCTGTTTTTCTTTGAACTTGTACAGTGATAAAGATAATGAGAAATACCAAGAAGAGGAGATAAAATAGAATAGATAATTATAGACCAAACATGATTCATATGAATAGAATAGGACGAGATCTGAAGCAATTGAAACATCGAATTTCTTGAAATTTAAGTATTTCTTCCTGATGTTTTGAACATTTCTCTCCAAAACTCCTCTACCCGGCACCAATAAAACTCATAATTTTATTTCAACAAATGCTACAAAATGTTGTTTATTTGAATTTGAAATTGGTAGTCAAAGTGTGATATCAATATGAATTTCAAGATATCATTTTATCACGAAAACAATGCATTTTTGGACTTGAAAACAATCGTTGAAATTTTCAGTTTGACACTTCGTGCGCGTGCTGGAAGTACACCAGGACTGGACAGCAAGCAAATGAATTCGTTGATTAATAAGAATAACACTTTCAGTCGGATGTTGTGTAAAGACTCGGATACTGTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>500 175 173 128 24</canonical_bands>
                <polymorphic_bands>673 175 128 24</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>500 128 128 81 47 46 46 24</canonical_bands>
                <polymorphic_bands>546 128 128 81 47 46 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGTAGGACAATGAGGCTACAAA</pcr_primer_p1>
		<pcr_primer_p2>TCAAAACATCAGGAAGAAATACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGTAGGACAATGAGGCTACAAAGTCTTGTTAAAAATATACATAGATTTTGGTTGTTGACAGCTTTTGTTTTCTGTTTTTCTTTGAACTTGTACAGTGATAAAGATAATGAGAAATACCAAGAAGAGGAGATAAAATAGAATAGATAATTATAGACCAAACATGATTCATATGAATAGAATAGGACGAGATCTGAAGCAATTGAAACATCGAATTTCTTGAAATTTAAGTATTTCTTCCTGATGTTTTGA</canonical_amplicon>
		<polymorphic_amplicon>TAGTAGGACAATGAGGCTACAAAGTCTTGTTAAAAATATACATAGATTTTGGTTGTTGACAKCTTTTGTTTTCTGTTTTTCTTTGAACTTGTACAGTGATAAAGATAATGAGAAATACCAAGAAGAGGAGATAAAATAGAATAGATAATTATAGACCAAACATGATTCATATGAATAGAATAGGACGAGATCTGAAGCAATTGAAACATCGAATTTCTTGAAATTTAAGTATTTCTTCCTGATGTTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27359</snp_id>
        <super_contig>c003001208.Contig1</super_contig>
        <contig_pos>324927</contig_pos>
        <strand>+</strand>
        <context>TTGACAKCTT[C/T]TGTTTTCTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTACAAAGTCTTGTTAAAAATATACATAGATTTTGGTTGTTGACAGCTT</left_flank>
        <right_flank>TGTTTTCTGTTTTTCTTTGAACTTGTACAGTGATAAAGATAATGAGAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAAGTGACATATCTTCAAGTTTCCTTCAAGCAGGCGCGTAGCCTATTTTTCTAAATATTTGAAAAAATTCTAAATATTTAGACTTTTATGTTTTGCACAATAACTTATTCATGTTATTATATTACATACCGTAAACACTCTAAATGCCACCCAAACCCCCAACTTTGAGCTCATATATCTCGGTTTTTACAGAAGATATCAAAAAATGGTCAACTGACAAAATTTTTTTATATTATGATAAAAATTTTGTCAGTTGAGCACTTTTTGATGTCGTCTACAGAAACCGAGACAATTGAGCTCGAAGTGCACGTATAGGGTGAGCTTCTATTAGAGTGTTTACGGTATTTCAAAATTCGAACTTTTGCCCTTGTCTGAAGTGCTGAACCAATTTCTTATGAACGGCTAAAAATGAGACTAGTTTGATCATCAAAATAGTAGGACAATGAGGCTACAAAGTCTTGTTAAAAATATACATAGATTTTGGTTGTTGACAGCTTTTGTTTTCTGTTTTTCTTTGAACTTGTACAGTGATAAAGATAATGAGAAATACCAAGAAGAGGAGATAAAATAGAATAGATAATTATAGACCAAACATGATTCATATGAATAGAATAGGACGAGATCTGAAGCAATTGAAACATCGAATTTCTTGAAATTTAAGTATTTCTTCCTGATGTTTTGAACATTTCTCTCCAAAACTCCTCTACCCGGCACCAATAAAACTCATAATTTTATTTCAACAAATGCTACAAAATGTTGTTTATTTGAATTTGAAATTGGTAGTCAAAGTGTGATATCAATATGAATTTCAAGATATCATTTTATCACGAAAACAATGCATTTTTGGACTTGAAAACAATCGTTGAAATTTTCAGTTTGACACTTCGTGCGCGTGCTGGAAGTACACCAGGACTGGACAGCAAGCAAATGAATTCGTTGATTAATAAGAATAACACTTTCAGTCGGATGTTGTGTAAAGACTCGGATACTGTCGGTGA</canonical>
            <polymorphic>TTCAAGTGACATATCTTCAAGTTTCCTTCAAGCAGGCGCGTAGCCTATTTTTCTAAATATTTGAAAAAATTCTAAATATTTAGACTTTTATGTTTTGCACAATAACTTATTCATGTTATTATATTACATACCGTAAACACTCTAAATGCCACCCAAACCCCCAACTTTGAGCTCATATATCTCGGTTTTTACAGAAGATATCAAAAAATGGTCAACTGACAAAATTTTTTTATATTATGATAAAAATTTTGTCAGTTGAGCACTTTTTGATGTCGTCTACAGAAACCGAGACAATTGAGCTCGAAGTGCACGTATAGGGTGAGCTTCTATTAGAGTGTTTACGGTATTTCAAAATTCGAACTTTTGCCCTTGTCTGAAGTGCTGAACCAATTTCTTATGAACGGCTAAAAATGAGACTAGTTTGATCATCAAAATAGTAGGACAATGAGGCTACAAAGTCTTGTTAAAAATATACATAGATTTTGGTTGTTGACAGCTTYTGTTTTCTGTTTTTCTTTGAACTTGTACAGTGATAAAGATAATGAGAAATACCAAGAAGAGGAGATAAAATAGAATAGATAATTATAGACCAAACATGATTCATATGAATAGAATAGGACGAGATCTGAAGCAATTGAAACATCGAATTTCTTGAAATTTAAGTATTTCTTCCTGATGTTTTGAACATTTCTCTCCAAAACTCCTCTACCCGGCACCAATAAAACTCATAATTTTATTTCAACAAATGCTACAAAATGTTGTTTATTTGAATTTGAAATTGGTAGTCAAAGTGTGATATCAATATGAATTTCAAGATATCATTTTATCACGAAAACAATGCATTTTTGGACTTGAAAACAATCGTTGAAATTTTCAGTTTGACACTTCGTGCGCGTGCTGGAAGTACACCAGGACTGGACAGCAAGCAAATGAATTCGTTGATTAATAAGAATAACACTTTCAGTCGGATGTTGTGTAAAGACTCGGATACTGTCGGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTAGGACAATGAGGCTACAAA</pcr_primer_p1>
		<pcr_primer_p2>TCAAAACATCAGGAAGAAATACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGTAGGACAATGAGGCTACAAAGTCTTGTTAAAAATATACATAGATTTTGGTTGTTGACAGCTTTTGTTTTCTGTTTTTCTTTGAACTTGTACAGTGATAAAGATAATGAGAAATACCAAGAAGAGGAGATAAAATAGAATAGATAATTATAGACCAAACATGATTCATATGAATAGAATAGGACGAGATCTGAAGCAATTGAAACATCGAATTTCTTGAAATTTAAGTATTTCTTCCTGATGTTTTGA</canonical_amplicon>
		<polymorphic_amplicon>TAGTAGGACAATGAGGCTACAAAGTCTTGTTAAAAATATACATAGATTTTGGTTGTTGACAGCTTYTGTTTTCTGTTTTTCTTTGAACTTGTACAGTGATAAAGATAATGAGAAATACCAAGAAGAGGAGATAAAATAGAATAGATAATTATAGACCAAACATGATTCATATGAATAGAATAGGACGAGATCTGAAGCAATTGAAACATCGAATTTCTTGAAATTTAAGTATTTCTTCCTGATGTTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27360</snp_id>
        <super_contig>c003101569.Contig1</super_contig>
        <contig_pos>6627</contig_pos>
        <strand></strand>
        <context>CTCACTAATA[C/A]AAGTTTTCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GAGGAACGTAAACAATTTGACAAATATTATAGGAAAAGAACTCACTAATA</left_flank>
        <right_flank>AAGTTTTCTAGAACATCTCAAAAAAGCCAACAAAACAGATAAGAAGGCAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGCCGAAGACAAGCCAGCTACACGGAAATATGGGTTAGAATGAACATAATTACATTGCAAGTTATAAACCGATTAATAGGTGAAATTAATGATGTCGTCGGGAGTTGGAAACCATAGAAAGAATATTAAAAGTAATCAGAGTGCATACTATTGTGAAGTTTTTCTTATCTACACATTCTTGAACAAACGGAATAGTGAGAGCGAGTTTGGTGATTGACTGACAGGTTCTAGGTGTTCCGGAGTTAATTCGACTTTATTGAGTTTCAAATTTTTAATCTTTGTGTTGTAAAGATCCCAGAAACTTTAGAATTAGTGCTAGAGTTTATTATGTTCAGAACACATGAATCCTAAAATACACAATGAACCTCTTGATGTTTCGAGGTTACAGGTTCTTCTTTTCTTTAAATACACACCCACAAAAACCTGCCATGTGTGTTAAAGTTTCTAAGAGGAACGTAAACAATTTGACAAATATTATAGGAAAAGAACTCACTAATACAAGTTTTCTAGAACATCTCAAAAAAGCCAACAAAACAGATAAGAAGGCAAAGCCTGGAGGGCCCCACACTGTCAAGTTTGAGCTCATATATCGCGGCTCCTATAAAAGATATCAAACTTGTGTCAACTGATAAAATGTTTGAGATATCATCATAAACAATTTATCAGTTGACAACTTTTTGATATCTTCCACAGGAACTGAGAAAAATTGGCTCAAATATAAAAAAAGTTGGGCCCGTCTGTTATAGGTTTTACGGTAAAAGAAATGGGAACGATGGTGGAAAGTGAAAAAAAAACAGATAGGTCTTATAAATTTGGAAAAAAAGTAAAAAATCATCGGAGACTTTTCTGAAGATTGGTATTCCATCTCGGAGAAGATAAAAAACGGAAAAGTGGATGAAACGATAAAGTTACGTAAATGGACAGGATGGTATAACGGGCCAGATAGAGAAAAGAAGTGGAGATGAATCACCAAAAAGAACAACCGCCTACTCTTCTTCT</canonical>
            <polymorphic>ACGCCGAAGACAAGCCAGCTACACGGAAATATGGGTTAGAATGAACATAATTACATTGCAAGTTATAAACCGATTAATAGGTGAAATTAATGATGTCGTCGGGAGTTGGAAACCATAGAAAGAATATTAAAAGTAATCAGAGTGCATACTATTGTGAAGTTTTTCTTATCTACACATTCTTGAACAAACGGAATAGTGAGAGCGAGTTTGGTGATTGACTGACAGGTTCTAGGTGTTCCGGAGTTAATTCGACTTTATTGAGTTTCAAATTTTTAATCTTTGTGTTGTAAAGATCCCAGAAACTTTAGAATTAGTGCTAGAGTTTATTATGTTCAGAACACATGAATCCTAAAATACACAATGAACCTCTTGATGTTTCGAGGTTACAGGTTCTTCTTTTCTTTAAATACACACCCACAAAAACCTGCCATGTGTGTTAAAGTTTCTAAGAGGAACGTAAACAATTTGACAAATATTATAGGAAAAGAACTCACTAATAMAAGTTTTCTAGAACATCTCAAAAAAGCCAACAAAACAGATAAGAAGGCAAAGCCTGGAGGGCCCCACACTGTCAAGTTTGAGCTCATATATCGCGGCTCCTATAAAAGATATCAAACTTGTGTCAACTGATAAAATGTTTGAGATATCATCATAAACAATTTATCAGTTGACAACTTTTTGATATCTTCCACAGGAACTGAGAAAAATTGGCTCAAATATAAAAAAAGTTGGGCCCGTCTGTTATAGGTTTTACGGTAAAAGAAATGGGAACGATGGTGGAAAGTGAAAAAAAAACAGATAGGTCTTATAAATTTGGAAAAAAAGTAAAAAATCATCGGAGACTTTTCTGAAGATTGGTATTCCATCTCGGAGAAGATAAAAAACGGAAAAGTGGATGAAACGATAAAGTTACGTAAATGGACAGGATGGTATAACGGGCCAGATAGAGAAAAGAAGTGGAGATGAATCACCAAAAAGAACAACCGCCTACTCTTCTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGAACACATGAATCCTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GCTTTGCCTTCTTATCTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>221</pcr_amplicon_size>
		<canonical_amplicon>TCAGAACACATGAATCCTAAAATACACAATGAACCTCTTGATGTTTCGAGGTTACAGGTTCTTCTTTTCTTTAAATACACACCCACAAAAACCTGCCATGTGTGTTAAAGTTTCTAAGAGGAACGTAAACAATTTGACAAATATTATAGGAAAAGAACTCACTAATACAAGTTTTCTAGAACATCTCAAAAAAGCCAACAAAACAGATAAGAAGGCAAAGC</canonical_amplicon>
		<polymorphic_amplicon>TCAGAACACATGAATCCTAAAATACACAATGAACCTCTTGATGTTTCGAGGTTACAGGTTCTTCTTTTCTTTAAATACACACCCACAAAAACCTGCCATGTGTGTTAAAGTTTCTAAGAGGAACGTAAACAATTTGACAAATATTATAGGAAAAGAACTCACTAATAMAAGTTTTCTAGAACATCTCAAAAAAGCCAACAAAACAGATAAGAAGGCAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27361</snp_id>
        <super_contig>c003101569.Contig1</super_contig>
        <contig_pos>6756</contig_pos>
        <strand></strand>
        <context>tgtgtcaact[G/T]ataaaatgtt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAGCTCATATATCGCGGCTCCTATAAAAGATATCAAACTTGTGTCAACT</left_flank>
        <right_flank>ATAAAATGTTTGAGATATCATCATAAACAATTTATCAGTTGACAACTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTAATCAGAGTGCATACTATTGTGAAGTTTTTCTTATCTACACATTCTTGAACAAACGGAATAGTGAGAGCGAGTTTGGTGATTGACTGACAGGTTCTAGGTGTTCCGGAGTTAATTCGACTTTATTGAGTTTCAAATTTTTAATCTTTGTGTTGTAAAGATCCCAGAAACTTTAGAATTAGTGCTAGAGTTTATTATGTTCAGAACACATGAATCCTAAAATACACAATGAACCTCTTGATGTTTCGAGGTTACAGGTTCTTCTTTTCTTTAAATACACACCCACAAAAACCTGCCATGTGTGTTAAAGTTTCTAAGAGGAACGTAAACAATTTGACAAATATTATAGGAAAAGAACTCACTAATACAAGTTTTCTAGAACATCTCAAAAAAGCCAACAAAACAGATAAGAAGGCAAAGCCTGGAGGGCCCCACACTGTCAAGTTTGAGCTCATATATCGCGGCTCCTATAAAAGATATCAAACTTGTGTCAACTGATAAAATGTTTGAGATATCATCATAAACAATTTATCAGTTGACAACTTTTTGATATCTTCCACAGGAACTGAGAAAAATTGGCTCAAATATAAAAAAAGTTGGGCCCGTCTGTTATAGGTTTTACGGTAAAAGAAATGGGAACGATGGTGGAAAGTGAAAAAAAAACAGATAGGTCTTATAAATTTGGAAAAAAAGTAAAAAATCATCGGAGACTTTTCTGAAGATTGGTATTCCATCTCGGAGAAGATAAAAAACGGAAAAGTGGATGAAACGATAAAGTTACGTAAATGGACAGGATGGTATAACGGGCCAGATAGAGAAAAGAAGTGGAGATGAATCACCAAAAAGAACAACCGCCTACTCTTCTTCTTCCTTTCTTTTTTCTTAACCCGTTATGGTTCTGTTTGCTGCCCTGCCACGACTCACAGCCACAAAGCGAGCAGAAAAAAGAACAAGAGAGAGGTAGAGAGAGGAAGAGGTCAGCACACAGAGAGAAAAA</canonical>
            <polymorphic>AAAGTAATCAGAGTGCATACTATTGTGAAGTTTTTCTTATCTACACATTCTTGAACAAACGGAATAGTGAGAGCGAGTTTGGTGATTGACTGACAGGTTCTAGGTGTTCCGGAGTTAATTCGACTTTATTGAGTTTCAAATTTTTAATCTTTGTGTTGTAAAGATCCCAGAAACTTTAGAATTAGTGCTAGAGTTTATTATGTTCAGAACACATGAATCCTAAAATACACAATGAACCTCTTGATGTTTCGAGGTTACAGGTTCTTCTTTTCTTTAAATACACACCCACAAAAACCTGCCATGTGTGTTAAAGTTTCTAAGAGGAACGTAAACAATTTGACAAATATTATAGGAAAAGAACTCACTAATACAAGTTTTCTAGAACATCTCAAAAAAGCCAACAAAACAGATAAGAAGGCAAAGCCTGGAGGGCCCCACACTGTCAAGTTTGAGCTCATATATCGCGGCTCCTATAAAAGATATCAAACTTGTGTCAACTKATAAAATGTTTGAGATATCATCATAAACAATTTATCAGTTGACAACTTTTTGATATCTTCCACAGGAACTGAGAAAAATTGGCTCAAATATAAAAAAAGTTGGGCCCGTCTGTTATAGGTTTTACGGTAAAAGAAATGGGAACGATGGTGGAAAGTGAAAAAAAAACAGATAGGTCTTATAAATTTGGAAAAAAAGTAAAAAATCATCGGAGACTTTTCTGAAGATTGGTATTCCATCTCGGAGAAGATAAAAAACGGAAAAGTGGATGAAACGATAAAGTTACGTAAATGGACAGGATGGTATAACGGGCCAGATAGAGAAAAGAAGTGGAGATGAATCACCAAAAAGAACAACCGCCTACTCTTCTTCTTCCTTTCTTTTTTCTTAACCCGTTATGGTTCTGTTTGCTGCCCTGCCACGACTCACAGCCACAAAGCGAGCAGAAAAAAGAACAAGAGAGAGGTAGAGAGAGGAAGAGGTCAGCACACAGAGAGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAACAGATAAGAAGGCAAAG</pcr_primer_p1>
		<pcr_primer_p2>TCCAAATTTATAAGACCTATCTGTT</pcr_primer_p2>
		<pcr_amplicon_size>288</pcr_amplicon_size>
		<canonical_amplicon>CAAAACAGATAAGAAGGCAAAGCCTGGAGGGCCCCACACTGTCAAGTTTGAGCTCATATATCGCGGCTCCTATAAAAGATATCAAACTTGTGTCAACTGATAAAATGTTTGAGATATCATCATAAACAATTTATCAGTTGACAACTTTTTGATATCTTCCACAGGAACTGAGAAAAATTGGCTCAAATATAAAAAAAGTTGGGCCCGTCTGTTATAGGTTTTACGGTAAAAGAAATGGGAACGATGGTGGAAAGTGAAAAAAAAACAGATAGGTCTTATAAATTTGGA</canonical_amplicon>
		<polymorphic_amplicon>CAAAACAGATAAGAAGGCAAAGCCTGGAGGGCCCCACACTGTCAAGTTTGAGCTCATATATCGCGGCTCCTATAAAAGATATCAAACTTGTGTCAACTKATAAAATGTTTGAGATATCATCATAAACAATTTATCAGTTGACAACTTTTTGATATCTTCCACAGGAACTGAGAAAAATTGGCTCAAATATAAAAAAAGTTGGGCCCGTCTGTTATAGGTTTTACGGTAAAAGAAATGGGAACGATGGTGGAAAGTGAAAAAAAAACAGATAGGTCTTATAAATTTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27362</snp_id>
        <super_contig>c003101659.Contig1</super_contig>
        <contig_pos>75</contig_pos>
        <strand>+</strand>
        <context>AAATCGACTC[C/T]TTTCAAGACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGTGTTGTTCGAAGGACTCGTTTGCTAAAATCAAGTTTCAAATCGACTC</left_flank>
        <right_flank>TTTCAAGACCATAACAACTTCAAAAAGGATGAGTTCTTGCCTGAAAGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTTCTTCCCTGGTCATTTTTTCTGGTGTTGTTCGAAGGACTCGTTTGCTAAAATCAAGTTTCAAATCGACTCCTTTCAAGACCATAACAACTTCAAAAAGGATGAGTTCTTGCCTGAAAGAATTTTTCATTAATTGTATTGATCAAAAACATTGAACCTTTAAACTACATTTATCTACTATTGTATAATTCAAAAACAACTTACGAGGTCATTTGTTTGGGCAATCTGTAACCTTTGGAAATCAGAGTAGATTTCATTTCTTCGATAACATTTCTACAATCTGCCACTCGCTTTTTCTCCACTTTCGATTTTTGGATCAAATAAGGCATATCATAGACAGTTGGATGCATGATAGATAATCTAAAATATTCAAATTCATTACACAATACGAAAATTGAAGGCAATAAGAAAGATGGTGAAACAATAACGAACCGGGCGGAAGAAAAAAAATCAGAAATGATGAATGTCCTGCTCTCATGTTGGTTTTTTCTCAGAATTTCTGTCTTCACATTACTTGGGAAGCCACGCCCCTTTCCCAAAGGTAACACCTCAACGATGCATGGGAATATCCTGAAACAAGAACCGTGTGTCTCTTCGGCCCCCTGGCCGCATGAGTCCATGATATGTATCTTTTTCCCATAACACATAAATGGTGGCCGGTGAAGGATGATCCATAGTCTGTGGGAAAGTATGGGAAAATGCATGTGAACAGTGCTGGCAGAAAATTTATCTCAAAATCATCATTTTAGTCCAATACTTTGTGCGTCTTCAAAAATGTCTTAGTAAGTGTCTGTTTGGCCTGAAAAATTTGGCAAATAATTCGGAGGGTACAACAATTCGGGGGTGCAAAGGGGTACAAAGCAATTTAGGGGTACANNNNNNNNNNAACTGAATTGTGGGTTTCGTACCCACTAAATTACTTTTTACCCCCTTGTACCCCCGAATTGTTGTACCCTCCGAATTATGTGCCGAAAAATGGATTTCAGAATTTTCCCCGG</canonical>
            <polymorphic>TCTTTCTTCCCTGGTCATTTTTTCTGGTGTTGTTCGAAGGACTCGTTTGCTAAAATCAAGTTTCAAATCGACTCYTTTCAAGACCATAACAACTTCAAAAAGGATGAGTTCTTGCCTGAAAGAATTTTTCATTAATTGTATTGATCAAAAACATTGAACCTTTAAACTACATTTATCTACTATTGTATAATTCAAAAACAACTTACGAGGTCATTTGTTTGGGCAATCTGTAACCTTTGGAAATCAGAGTAGATTTCATTTCTTCGATAACATTTCTACAATCTGCCACTCGCTTTTTCTCCACTTTCGATTTTTGGATCAAATAAGGCATATCATAGACAGTTGGATGCATGATAGATAATCTAAAATATTCAAATTCATTACACAATACGAAAATTGAAGGCAATAAGAAAGATGGTGAAACAATAACGAACCGGGCGGAAGAAAAAAAATCAGAAATGATGAATGTCCTGCTCTCATGTTGGTTTTTTCTCAGAATTTCTGTCTTCACATTACTTGGGAAGCCACGCCCCTTTCCCAAAGGTAACACCTCAACGATGCATGGGAATATCCTGAAACAAGAACCGTGTGTCTCTTCGGCCCCCTGGCCGCATGAGTCCATGATATGTATCTTTTTCCCATAACACATAAATGGTGGCCGGTGAAGGATGATCCATAGTCTGTGGGAAAGTATGGGAAAATGCATGTGAACAGTGCTGGCAGAAAATTTATCTCAAAATCATCATTTTAGTCCAATACTTTGTGCGTCTTCAAAAATGTCTTAGTAAGTGTCTGTTTGGCCTGAAAAATTTGGCAAATAATTCGGAGGGTACAACAATTCGGGGGTGCAAAGGGGTACAAAGCAATTTAGGGGTACANNNNNNNNNNAACTGAATTGTGGGTTTCGTACCCACTAAATTACTTTTTACCCCCTTGTACCCCCGAATTGTTGTACCCTCCGAATTATGTGCCGAAAAATGGATTTCAGAATTTTCCCCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTCTTCCCTGGTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>TACTCTGATTTCCAAAGGTTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTCTTCCCTGGTCATTTTTTCTGGTGTTGTTCGAAGGACTCGTTTGCTAAAATCAAGTTTCAAATCGACTCYTTTCAAGACCATAACAACTTCAAAAAGGATGAGTTCTTGCCTGAAAGAATTTTTCATTAATTGTATTGATCAAAAACATTGAACCTTTAAACTACATTTATCTACTATTGTATAATTCAAAAACAACTTACGAGGTCATTTGTTTGGGCAATCTGTAACCTTTGGAAATCAGAGTAGATTTCATTTCTTCGATAACATTTCTACAATCTGCCACTCGCTTTTTCTCCACTTTCGATTTTTGGATCAAATAAGGCATATCATAGACAGTTGGATGCATGATAGATAATCTAAAATATTCAAATTCATTACACAATACGAAAATTGAAGGCAATAAGAAAGATGGTGAAACAATAACGAACCGGGCGGAAGAAAAAAAATCAGAAATGATGAATGTCCTGCTCTCATGTTGGTTTTTTCTCAGAATCTCTGTCTTCACATTACTTGGGA</canonical_amplicon>
		<polymorphic_amplicon>CTTTCTTCCCTGGTCATTTTTTCTGGTGTTGTTCGAAGGACTCGTTTGCTAAAATCAAGTTTCAAATCGACTCYTTTCAAGACCATAACAACTTCAAAAAGGATGAGTTCTTGCCTGAAAGAATTTTTCATTAATTGTATTGATCAAAAACATTGAACCTTTAAACTACATTTATCTACTATTGTATAATTCAAAAACAACTTACGAGGTCATTTGTTTGGGCAATCTGTAACCTTTGGAAATCAGAGTAGATTTCATTTCTTCGATAACATTTCTACAATCTGCCACTCGCTTTTTCTCCACTTTCGATTTTTGGATCAAATAAGGCATATCATAGACAGTTGGATGCATGATAGATAATCTAAAATATTCAAATTCATTACACAATACGAAAATTGAAGGCAATAAGAAAGATGGTGAAACAATAACGAACCGGGCGGAAGAAAAAAAATCAGAAATGATGAATGTCCTGCTCTCATGTTGGTTTTTTCTCAGAATTTCTGTCTTCACATTACTTGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27363</snp_id>
        <super_contig>c003101659.Contig1</super_contig>
        <contig_pos>2821</contig_pos>
        <strand>-</strand>
        <context>CCAAAAATCG[G/T]AAGTGGAYAA</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTATCATGCATCCAACTGTCTATGATATGCCTTATTTGATCCAAAAATCG</left_flank>
        <right_flank>AAGTGGAGAAAAAGCGAGTGGCAGACTGTAAAAATGTTATTGAAGAAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATTTTTCCGGATTCTTTTGGAAAATGAAAGACGTTGGTATTTTCCCCCTGTATTTCGAAGCTAACCAGTAATTTTTTTAATATGGCGAGCCCTGATATCTATTTTCCCATGCTCCATATATTTTCACAGACTTTCCAACCCATCCGTCACGGTCTACCATTTACGTGTTATGGGAAAATGAAACATCATGGACTTAGTGTCAGGTTGCTAAAGAGACACACGGTTCTTGTTTCAGGATATTCCCATGCATCGTTGAGGTGTTACCTGTGGGAAAGGGGCGTGGCTTCCCAAGTAATGTGAAGACAGAAATTCTGAGAAAAAACCAACATGAGAGCAGGACATTCATCATTTCTGATTTTTTTTCCGTCCGGTTCGTTATTGTTTCACCATCTTTCTTATTGCCTTCAATTTTCGTATTGTGTAATGAATTTGAATATTTTAGATTATCTATCATGCATCCAACTGTCTATGATATGCCTTATTTGATCCAAAAATCGAAAGTGGAGAAAAAGCGAGTGGCAGACTGTAAAAATGTTATTGAAGAAATGAAATCTACTCTGATTTCCAAAGGTTACAGATTGCCCAAACAAATGACCTCGTAAGTTGTTTTTGAATTATACAATAGTAGATAAATGTAGTTTAAAGGTTCAATGTTTTTGATCAATACAATTAATGAAAAATTCTTTCAGGCAAGAACTCATCCTTTTTGAAGTTGTTATGGTCTTGAAAGGAGTCGATTTGAAACTTGATTTTAGCAAACGATCCTTCGAACAACACCAGAAAAAATGACCAGGGAAGAAAGACAAGAATTGAAAAAAACAAGAGAGCAGTATCGAAGGAACAAAATTGATGCAGCTTGTTCACATTTAGAAGAGTTCCTCATCATGAACGATTTGAACGGAATATTTGGGTAAGTAAAAACAATCATTTCAAAACTTTGGATATAATGAATCGCGGAAATTGTTAGTAAACTACATGTGTTCCAGGTATCATTAAAT</canonical>
            <polymorphic>TTATTTTTCCGGATTCTTTTGGAAAATGAAAGACGTTGGTATTTTCCCCCTGTATTTCGAAGCTAACCAGTAATTTTTTTAATATGGCGAGCCCTGATATCTATTTTCCCATGCTCCATATATTTTCACAGACTTTCCAACCCATCCGTCACGGTCTACCATTTACGTGTTATGGGAAAATGAAACATCATGGACTTAGTGTCAGGTTGCTAAAGAGACACACGGTTCTTGTTTCAGGATATTCCCATGCATCGTTGAGGTGTTACCTGTGGGAAAGGGGCGTGGCTTCCCAAGTAATGTGAAGACAGAAATTCTGAGAAAAAACCAACATGAGAGCAGGACATTCATCATTTCTGATTTTTTTTCCGTCCGGTTCGTTATTGTTTCACCATCTTTCTTATTGCCTTCAATTTTCGTATTGTGTAATGAATTTGAATATTTTAGATTATCTATCATGCATCCAACTGTCTATGATATGCCTTATTTGATCCAAAAATCGKAAGTGGAGAAAAAGCGAGTGGCAGACTGTAAAAATGTTATTGAAGAAATGAAATCTACTCTGATTTCCAAAGGTTACAGATTGCCCAAACAAATGACCTCGTAAGTTGTTTTTGAATTATACAATAGTAGATAAATGTAGTTTAAAGGTTCAATGTTTTTGATCAATACAATTAATGAAAAATTCTTTCAGGCAAGAACTCATCCTTTTTGAAGTTGTTATGGTCTTGAAAGGAGTCGATTTGAAACTTGATTTTAGCAAACGATCCTTCGAACAACACCAGAAAAAATGACCAGGGAAGAAAGACAAGAATTGAAAAAAACAAGAGAGCAGTATCGAAGGAACAAAATTGATGCAGCTTGTTCACATTTAGAAGAGTTCCTCATCATGAACGATTTGAACGGAATATTTGGGTAAGTAAAAACAATCATTTCAAAACTTTGGATATAATGAATCGCGGAAATTGTTAGTAAACTACATGTGTTCCAGGTATCATTAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>440 239 164 66 58 33</canonical_bands>
                <polymorphic_bands>679 164 66 58 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCGTATTGTGTAATGAATTTGA</pcr_primer_p1>
		<pcr_primer_p2>CAAAAACATTGAACCTTTAAACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCGTATTGTGTAATGAATTTGAATATTTTAGATTATCTATCATGCATCCAACTGTCTATGATATGCCTTATTTGATCCAAAAATCGAAAGTGGAGAAAAAGCGAGTGGCAGACTGTAAAAATGTTATTGAAGAAATGAAATCTACTCTGATTTCCAAAGGTTACAGATTGCCCAAACAAATGACCTCGTAAGTTGTTTTTGAATTATACAATAGTAGATAAATGTAGTTTAAAGGTTCAATGTTTTTG</canonical_amplicon>
		<polymorphic_amplicon>TTCGTATTGTGTAATGAATTTGAATATTTTAGATTATCTATCATGCATCCAACTGTCTATGATATGCCTTATTTGATCCAAAAATCGKAAGTGGAGAAAAAGCGAGTGGCAGACTGTAAAAATGTTATTGAAGAAATGAAATCTACTCTGATTTCCAAAGGTTACAGATTGCCCAAACAAATGACCTCGTAAGTTGTTTTTGAATTATACAATAGTAGATAAATGTAGTTTAAAGGTTCAATGTTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27364</snp_id>
        <super_contig>c003101659.Contig1</super_contig>
        <contig_pos>2829</contig_pos>
        <strand>-</strand>
        <context>CGKAAGTGGA[C/T]AAAAAGCGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATCCAACTGTCTATGATATGCCTTATTTGATCCAAAAATCGAAAGTGGA</left_flank>
        <right_flank>AAAAAGCGAGTGGCAGACTGTAAAAATGTTATTGAAGAAATGAAATCTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGGATTCTTTTGGAAAATGAAAGACGTTGGTATTTTCCCCCTGTATTTCGAAGCTAACCAGTAATTTTTTTAATATGGCGAGCCCTGATATCTATTTTCCCATGCTCCATATATTTTCACAGACTTTCCAACCCATCCGTCACGGTCTACCATTTACGTGTTATGGGAAAATGAAACATCATGGACTTAGTGTCAGGTTGCTAAAGAGACACACGGTTCTTGTTTCAGGATATTCCCATGCATCGTTGAGGTGTTACCTGTGGGAAAGGGGCGTGGCTTCCCAAGTAATGTGAAGACAGAAATTCTGAGAAAAAACCAACATGAGAGCAGGACATTCATCATTTCTGATTTTTTTTCCGTCCGGTTCGTTATTGTTTCACCATCTTTCTTATTGCCTTCAATTTTCGTATTGTGTAATGAATTTGAATATTTTAGATTATCTATCATGCATCCAACTGTCTATGATATGCCTTATTTGATCCAAAAATCGAAAGTGGAGAAAAAGCGAGTGGCAGACTGTAAAAATGTTATTGAAGAAATGAAATCTACTCTGATTTCCAAAGGTTACAGATTGCCCAAACAAATGACCTCGTAAGTTGTTTTTGAATTATACAATAGTAGATAAATGTAGTTTAAAGGTTCAATGTTTTTGATCAATACAATTAATGAAAAATTCTTTCAGGCAAGAACTCATCCTTTTTGAAGTTGTTATGGTCTTGAAAGGAGTCGATTTGAAACTTGATTTTAGCAAACGATCCTTCGAACAACACCAGAAAAAATGACCAGGGAAGAAAGACAAGAATTGAAAAAAACAAGAGAGCAGTATCGAAGGAACAAAATTGATGCAGCTTGTTCACATTTAGAAGAGTTCCTCATCATGAACGATTTGAACGGAATATTTGGGTAAGTAAAAACAATCATTTCAAAACTTTGGATATAATGAATCGCGGAAATTGTTAGTAAACTACATGTGTTCCAGGTATCATTAAATTTGAGAGT</canonical>
            <polymorphic>CCGGATTCTTTTGGAAAATGAAAGACGTTGGTATTTTCCCCCTGTATTTCGAAGCTAACCAGTAATTTTTTTAATATGGCGAGCCCTGATATCTATTTTCCCATGCTCCATATATTTTCACAGACTTTCCAACCCATCCGTCACGGTCTACCATTTACGTGTTATGGGAAAATGAAACATCATGGACTTAGTGTCAGGTTGCTAAAGAGACACACGGTTCTTGTTTCAGGATATTCCCATGCATCGTTGAGGTGTTACCTGTGGGAAAGGGGCGTGGCTTCCCAAGTAATGTGAAGACAGAAATTCTGAGAAAAAACCAACATGAGAGCAGGACATTCATCATTTCTGATTTTTTTTCCGTCCGGTTCGTTATTGTTTCACCATCTTTCTTATTGCCTTCAATTTTCGTATTGTGTAATGAATTTGAATATTTTAGATTATCTATCATGCATCCAACTGTCTATGATATGCCTTATTTGATCCAAAAATCGAAAGTGGAYAAAAAGCGAGTGGCAGACTGTAAAAATGTTATTGAAGAAATGAAATCTACTCTGATTTCCAAAGGTTACAGATTGCCCAAACAAATGACCTCGTAAGTTGTTTTTGAATTATACAATAGTAGATAAATGTAGTTTAAAGGTTCAATGTTTTTGATCAATACAATTAATGAAAAATTCTTTCAGGCAAGAACTCATCCTTTTTGAAGTTGTTATGGTCTTGAAAGGAGTCGATTTGAAACTTGATTTTAGCAAACGATCCTTCGAACAACACCAGAAAAAATGACCAGGGAAGAAAGACAAGAATTGAAAAAAACAAGAGAGCAGTATCGAAGGAACAAAATTGATGCAGCTTGTTCACATTTAGAAGAGTTCCTCATCATGAACGATTTGAACGGAATATTTGGGTAAGTAAAAACAATCATTTCAAAACTTTGGATATAATGAATCGCGGAAATTGTTAGTAAACTACATGTGTTCCAGGTATCATTAAATTTGAGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGTATTGTGTAATGAATTTGA</pcr_primer_p1>
		<pcr_primer_p2>CAAAAACATTGAACCTTTAAACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCGTATTGTGTAATGAATTTGAATATTTTAGATTATCTATCATGCATCCAACTGTCTATGATATGCCTTATTTGATCCAAAAATCGAAAGTGGAGAAAAAGCGAGTGGCAGACTGTAAAAATGTTATTGAAGAAATGAAATCTACTCTGATTTCCAAAGGTTACAGATTGCCCAAACAAATGACCTCGTAAGTTGTTTTTGAATTATACAATAGTAGATAAATGTAGTTTAAAGGTTCAATGTTTTTG</canonical_amplicon>
		<polymorphic_amplicon>TTCGTATTGTGTAATGAATTTGAATATTTTAGATTATCTATCATGCATCCAACTGTCTATGATATGCCTTATTTGATCCAAAAATCGAAAGTGGAYAAAAAGCGAGTGGCAGACTGTAAAAATGTTATTGAAGAAATGAAATCTACTCTGATTTCCAAAGGTTACAGATTGCCCAAACAAATGACCTCGTAAGTTGTTTTTGAATTATACAATAGTAGATAAATGTAGTTTAAAGGTTCAATGTTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27365</snp_id>
        <super_contig>c003101659.Contig1</super_contig>
        <contig_pos>2893</contig_pos>
        <strand>-</strand>
        <context>GATTTCCAAA[C/G]GTTACAGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAGACTGTAAAAATGTTATTGAAGAAATGAAATCTACTCTGATTTCCAAA</left_flank>
        <right_flank>GTTACAGATTGCCCAAACAAATGACCTCGTAAGTTGTTTTTGAATTATAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTTAATATGGCGAGCCCTGATATCTATTTTCCCATGCTCCATATATTTTCACAGACTTTCCAACCCATCCGTCACGGTCTACCATTTACGTGTTATGGGAAAATGAAACATCATGGACTTAGTGTCAGGTTGCTAAAGAGACACACGGTTCTTGTTTCAGGATATTCCCATGCATCGTTGAGGTGTTACCTGTGGGAAAGGGGCGTGGCTTCCCAAGTAATGTGAAGACAGAAATTCTGAGAAAAAACCAACATGAGAGCAGGACATTCATCATTTCTGATTTTTTTTCCGTCCGGTTCGTTATTGTTTCACCATCTTTCTTATTGCCTTCAATTTTCGTATTGTGTAATGAATTTGAATATTTTAGATTATCTATCATGCATCCAACTGTCTATGATATGCCTTATTTGATCCAAAAATCGAAAGTGGAGAAAAAGCGAGTGGCAGACTGTAAAAATGTTATTGAAGAAATGAAATCTACTCTGATTTCCAAAGGTTACAGATTGCCCAAACAAATGACCTCGTAAGTTGTTTTTGAATTATACAATAGTAGATAAATGTAGTTTAAAGGTTCAATGTTTTTGATCAATACAATTAATGAAAAATTCTTTCAGGCAAGAACTCATCCTTTTTGAAGTTGTTATGGTCTTGAAAGGAGTCGATTTGAAACTTGATTTTAGCAAACGATCCTTCGAACAACACCAGAAAAAATGACCAGGGAAGAAAGACAAGAATTGAAAAAAACAAGAGAGCAGTATCGAAGGAACAAAATTGATGCAGCTTGTTCACATTTAGAAGAGTTCCTCATCATGAACGATTTGAACGGAATATTTGGGTAAGTAAAAACAATCATTTCAAAACTTTGGATATAATGAATCGCGGAAATTGTTAGTAAACTACATGTGTTCCAGGTATCATTAAATTTGAGAGTTTTTTGAGTTTGAATATTCAGGGGCCAGTAGCAGGCATGTCAATGAATGAGGGCGGAGTTGAAC</canonical>
            <polymorphic>ATTTTTTTAATATGGCGAGCCCTGATATCTATTTTCCCATGCTCCATATATTTTCACAGACTTTCCAACCCATCCGTCACGGTCTACCATTTACGTGTTATGGGAAAATGAAACATCATGGACTTAGTGTCAGGTTGCTAAAGAGACACACGGTTCTTGTTTCAGGATATTCCCATGCATCGTTGAGGTGTTACCTGTGGGAAAGGGGCGTGGCTTCCCAAGTAATGTGAAGACAGAAATTCTGAGAAAAAACCAACATGAGAGCAGGACATTCATCATTTCTGATTTTTTTTCCGTCCGGTTCGTTATTGTTTCACCATCTTTCTTATTGCCTTCAATTTTCGTATTGTGTAATGAATTTGAATATTTTAGATTATCTATCATGCATCCAACTGTCTATGATATGCCTTATTTGATCCAAAAATCGAAAGTGGAGAAAAAGCGAGTGGCAGACTGTAAAAATGTTATTGAAGAAATGAAATCTACTCTGATTTCCAAASGTTACAGATTGCCCAAACAAATGACCTCGTAAGTTGTTTTTGAATTATACAATAGTAGATAAATGTAGTTTAAAGGTTCAATGTTTTTGATCAATACAATTAATGAAAAATTCTTTCAGGCAAGAACTCATCCTTTTTGAAGTTGTTATGGTCTTGAAAGGAGTCGATTTGAAACTTGATTTTAGCAAACGATCCTTCGAACAACACCAGAAAAAATGACCAGGGAAGAAAGACAAGAATTGAAAAAAACAAGAGAGCAGTATCGAAGGAACAAAATTGATGCAGCTTGTTCACATTTAGAAGAGTTCCTCATCATGAACGATTTGAACGGAATATTTGGGTAAGTAAAAACAATCATTTCAAAACTTTGGATATAATGAATCGCGGAAATTGTTAGTAAACTACATGTGTTCCAGGTATCATTAAATTTGAGAGTTTTTTGAGTTTGAATATTCAGGGGCCAGTAGCAGGCATGTCAATGAATGAGGGCGGAGTTGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGTATTGTGTAATGAATTTGA</pcr_primer_p1>
		<pcr_primer_p2>CAAAAACATTGAACCTTTAAACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCGTATTGTGTAATGAATTTGAATATTTTAGATTATCTATCATGCATCCAACTGTCTATGATATGCCTTATTTGATCCAAAAATCGAAAGTGGAGAAAAAGCGAGTGGCAGACTGTAAAAATGTTATTGAAGAAATGAAATCTACTCTGATTTCCAAAGGTTACAGATTGCCCAAACAAATGACCTCGTAAGTTGTTTTTGAATTATACAATAGTAGATAAATGTAGTTTAAAGGTTCAATGTTTTTG</canonical_amplicon>
		<polymorphic_amplicon>TTCGTATTGTGTAATGAATTTGAATATTTTAGATTATCTATCATGCATCCAACTGTCTATGATATGCCTTATTTGATCCAAAAATCGAAAGTGGAGAAAAAGCGAGTGGCAGACTGTAAAAATGTTATTGAAGAAATGAAATCTACTCTGATTTCCAAASGTTACAGATTGCCCAAACAAATGACCTCGTAAGTTGTTTTTGAATTATACAATAGTAGATAAATGTAGTTTAAAGGTTCAATGTTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27366</snp_id>
        <super_contig>c003101659.Contig1</super_contig>
        <contig_pos>2908</contig_pos>
        <strand>-</strand>
        <context>CAGATTGCCC[C/T]AACAAATGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATTGAAGAAATGAAATCTACTCTGATTTCCAAAGGTTACAGATTGCCC</left_flank>
        <right_flank>AACAAATGACCTCGTAAGTTGTTTTTGAATTATACAATAGTAGATAAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGCCCTGATATCTATTTTCCCATGCTCCATATATTTTCACAGACTTTCCAACCCATCCGTCACGGTCTACCATTTACGTGTTATGGGAAAATGAAACATCATGGACTTAGTGTCAGGTTGCTAAAGAGACACACGGTTCTTGTTTCAGGATATTCCCATGCATCGTTGAGGTGTTACCTGTGGGAAAGGGGCGTGGCTTCCCAAGTAATGTGAAGACAGAAATTCTGAGAAAAAACCAACATGAGAGCAGGACATTCATCATTTCTGATTTTTTTTCCGTCCGGTTCGTTATTGTTTCACCATCTTTCTTATTGCCTTCAATTTTCGTATTGTGTAATGAATTTGAATATTTTAGATTATCTATCATGCATCCAACTGTCTATGATATGCCTTATTTGATCCAAAAATCGAAAGTGGAGAAAAAGCGAGTGGCAGACTGTAAAAATGTTATTGAAGAAATGAAATCTACTCTGATTTCCAAAGGTTACAGATTGCCCAAACAAATGACCTCGTAAGTTGTTTTTGAATTATACAATAGTAGATAAATGTAGTTTAAAGGTTCAATGTTTTTGATCAATACAATTAATGAAAAATTCTTTCAGGCAAGAACTCATCCTTTTTGAAGTTGTTATGGTCTTGAAAGGAGTCGATTTGAAACTTGATTTTAGCAAACGATCCTTCGAACAACACCAGAAAAAATGACCAGGGAAGAAAGACAAGAATTGAAAAAAACAAGAGAGCAGTATCGAAGGAACAAAATTGATGCAGCTTGTTCACATTTAGAAGAGTTCCTCATCATGAACGATTTGAACGGAATATTTGGGTAAGTAAAAACAATCATTTCAAAACTTTGGATATAATGAATCGCGGAAATTGTTAGTAAACTACATGTGTTCCAGGTATCATTAAATTTGAGAGTTTTTTGAGTTTGAATATTCAGGGGCCAGTAGCAGGCATGTCAATGAATGAGGGCGGAGTTGAACTTTTCCGAGAGGCAA</canonical>
            <polymorphic>CGAGCCCTGATATCTATTTTCCCATGCTCCATATATTTTCACAGACTTTCCAACCCATCCGTCACGGTCTACCATTTACGTGTTATGGGAAAATGAAACATCATGGACTTAGTGTCAGGTTGCTAAAGAGACACACGGTTCTTGTTTCAGGATATTCCCATGCATCGTTGAGGTGTTACCTGTGGGAAAGGGGCGTGGCTTCCCAAGTAATGTGAAGACAGAAATTCTGAGAAAAAACCAACATGAGAGCAGGACATTCATCATTTCTGATTTTTTTTCCGTCCGGTTCGTTATTGTTTCACCATCTTTCTTATTGCCTTCAATTTTCGTATTGTGTAATGAATTTGAATATTTTAGATTATCTATCATGCATCCAACTGTCTATGATATGCCTTATTTGATCCAAAAATCGAAAGTGGAGAAAAAGCGAGTGGCAGACTGTAAAAATGTTATTGAAGAAATGAAATCTACTCTGATTTCCAAAGGTTACAGATTGCCCYAACAAATGACCTCGTAAGTTGTTTTTGAATTATACAATAGTAGATAAATGTAGTTTAAAGGTTCAATGTTTTTGATCAATACAATTAATGAAAAATTCTTTCAGGCAAGAACTCATCCTTTTTGAAGTTGTTATGGTCTTGAAAGGAGTCGATTTGAAACTTGATTTTAGCAAACGATCCTTCGAACAACACCAGAAAAAATGACCAGGGAAGAAAGACAAGAATTGAAAAAAACAAGAGAGCAGTATCGAAGGAACAAAATTGATGCAGCTTGTTCACATTTAGAAGAGTTCCTCATCATGAACGATTTGAACGGAATATTTGGGTAAGTAAAAACAATCATTTCAAAACTTTGGATATAATGAATCGCGGAAATTGTTAGTAAACTACATGTGTTCCAGGTATCATTAAATTTGAGAGTTTTTTGAGTTTGAATATTCAGGGGCCAGTAGCAGGCATGTCAATGAATGAGGGCGGAGTTGAACTTTTCCGAGAGGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGTATTGTGTAATGAATTTGA</pcr_primer_p1>
		<pcr_primer_p2>CAAAAACATTGAACCTTTAAACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCGTATTGTGTAATGAATTTGAATATTTTAGATTATCTATCATGCATCCAACTGTCTATGATATGCCTTATTTGATCCAAAAATCGAAAGTGGAGAAAAAGCGAGTGGCAGACTGTAAAAATGTTATTGAAGAAATGAAATCTACTCTGATTTCCAAAGGTTACAGATTGCCCAAACAAATGACCTCGTAAGTTGTTTTTGAATTATACAATAGTAGATAAATGTAGTTTAAAGGTTCAATGTTTTTG</canonical_amplicon>
		<polymorphic_amplicon>TTCGTATTGTGTAATGAATTTGAATATTTTAGATTATCTATCATGCATCCAACTGTCTATGATATGCCTTATTTGATCCAAAAATCGAAAGTGGAGAAAAAGCGAGTGGCAGACTGTAAAAATGTTATTGAAGAAATGAAATCTACTCTGATTTCCAAAGGTTACAGATTGCCCYAACAAATGACCTCGTAAGTTGTTTTTGAATTATACAATAGTAGATAAATGTAGTTTAAAGGTTCAATGTTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27367</snp_id>
        <super_contig>c003101659.Contig1</super_contig>
        <contig_pos>3217</contig_pos>
        <strand>-</strand>
        <context>CATGAACGAT[A/T]TGAACGGAAR</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATTGATGCAGCTTGTTCACATTTAGAAGAGTTCCTCATCATGAACGAT</left_flank>
        <right_flank>TGAACGGAATATTTGGGTAAGTAAAAACAATCATTTCAAAACTTTGGATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTATTGCCTTCAATTTTCGTATTGTGTAATGAATTTGAATATTTTAGATTATCTATCATGCATCCAACTGTCTATGATATGCCTTATTTGATCCAAAAATCGAAAGTGGAGAAAAAGCGAGTGGCAGACTGTAAAAATGTTATTGAAGAAATGAAATCTACTCTGATTTCCAAAGGTTACAGATTGCCCAAACAAATGACCTCGTAAGTTGTTTTTGAATTATACAATAGTAGATAAATGTAGTTTAAAGGTTCAATGTTTTTGATCAATACAATTAATGAAAAATTCTTTCAGGCAAGAACTCATCCTTTTTGAAGTTGTTATGGTCTTGAAAGGAGTCGATTTGAAACTTGATTTTAGCAAACGATCCTTCGAACAACACCAGAAAAAATGACCAGGGAAGAAAGACAAGAATTGAAAAAAACAAGAGAGCAGTATCGAAGGAACAAAATTGATGCAGCTTGTTCACATTTAGAAGAGTTCCTCATCATGAACGATTTGAACGGAATATTTGGGTAAGTAAAAACAATCATTTCAAAACTTTGGATATAATGAATCGCGGAAATTGTTAGTAAACTACATGTGTTCCAGGTATCATTAAATTTGAGAGTTTTTTGAGTTTGAATATTCAGGGGCCAGTAGCAGGCATGTCAATGAATGAGGGCGGAGTTGAACTTTTCCGAGAGGCAAGAATTCCAGCAATGCTGTGTTTGAGAGATGGTGACAATGGAGCCTGAGAGGTGATATCTGGGAGAGCTTTGAGACGGTCTCTGACAAGTTGCAGCATTTGGAGTCGCGTCAATTTTGATCTGAAAAAAATATTGGGATAAAAAGAATATGTGAAAAAACTATGCTACTGGCCCCTGAATATTCAAACTCAAAAAACTCTCAAATTTAATGATACCTGGAACACATGTAGTTTACTAACAATTTCCGCGATTCATTATATCCAAAGTTTTGAAATGATTGTTTTTACTTACCCAAATATTCCGTTCAAAT</canonical>
            <polymorphic>CTTATTGCCTTCAATTTTCGTATTGTGTAATGAATTTGAATATTTTAGATTATCTATCATGCATCCAACTGTCTATGATATGCCTTATTTGATCCAAAAATCGAAAGTGGAGAAAAAGCGAGTGGCAGACTGTAAAAATGTTATTGAAGAAATGAAATCTACTCTGATTTCCAAAGGTTACAGATTGCCCAAACAAATGACCTCGTAAGTTGTTTTTGAATTATACAATAGTAGATAAATGTAGTTTAAAGGTTCAATGTTTTTGATCAATACAATTAATGAAAAATTCTTTCAGGCAAGAACTCATCCTTTTTGAAGTTGTTATGGTCTTGAAAGGAGTCGATTTGAAACTTGATTTTAGCAAACGATCCTTCGAACAACACCAGAAAAAATGACCAGGGAAGAAAGACAAGAATTGAAAAAAACAAGAGAGCAGTATCGAAGGAACAAAATTGATGCAGCTTGTTCACATTTAGAAGAGTTCCTCATCATGAACGATWTGAACGGAATATTTGGGTAAGTAAAAACAATCATTTCAAAACTTTGGATATAATGAATCGCGGAAATTGTTAGTAAACTACATGTGTTCCAGGTATCATTAAATTTGAGAGTTTTTTGAGTTTGAATATTCAGGGGCCAGTAGCAGGCATGTCAATGAATGAGGGCGGAGTTGAACTTTTCCGAGAGGCAAGAATTCCAGCAATGCTGTGTTTGAGAGATGGTGACAATGGAGCCTGAGAGGTGATATCTGGGAGAGCTTTGAGACGGTCTCTGACAAGTTGCAGCATTTGGAGTCGCGTCAATTTTGATCTGAAAAAAATATTGGGATAAAAAGAATATGTGAAAAAACTATGCTACTGGCCCCTGAATATTCAAACTCAAAAAACTCTCAAATTTAATGATACCTGGAACACATGTAGTTTACTAACAATTTCCGCGATTCATTATATCCAAAGTTTTGAAATGATTGTTTTTACTTACCCAAATATTCCGTTCAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAGTTGTTATGGTCTTGA</pcr_primer_p1>
		<pcr_primer_p2>GCGATTCATTATATCCAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAGTTGTTATGGTCTTGAAAGGAGTCGATTTGAAACTTGATTTTAGCAAACGATCCTTCGAACAACACCAGAAAAAATGACCAGGGAAGAAAGACAAGAATTGAAAAAAACAAGAGAGCAGTATCGAAGGAACAAAATTGATGCAGCTTGTTCACATTTAGAAGAGTTCCTCATCATGAACGATTTGAACGGAATATTTGGGTAAGTAAAAACAATCATTTCAAAACTTTGGATATAATGAATCGC</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAGTTGTTATGGTCTTGAAAGGAGTCGATTTGAAACTTGATTTTAGCAAACGATCCTTCGAACAACACCAGAAAAAATGACCAGGGAAGAAAGACAAGAATTGAAAAAAACAAGAGAGCAGTATCGAAGGAACAAAATTGATGCAGCTTGTTCACATTTAGAAGAGTTCCTCATCATGAACGATWTGAACGGAATATTTGGGTAAGTAAAAACAATCATTTCAAAACTTTGGATATAATGAATCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27368</snp_id>
        <super_contig>c003101659.Contig1</super_contig>
        <contig_pos>3227</contig_pos>
        <strand>-</strand>
        <context>WTGAACGGAA[A/G]ATTTGGGTWA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCTTGTTCACATTTAGAAGAGTTCCTCATCATGAACGATTTGAACGGAA</left_flank>
        <right_flank>ATTTGGGTAAGTAAAAACAATCATTTCAAAACTTTGGATATAATGAATCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAATTTTCGTATTGTGTAATGAATTTGAATATTTTAGATTATCTATCATGCATCCAACTGTCTATGATATGCCTTATTTGATCCAAAAATCGAAAGTGGAGAAAAAGCGAGTGGCAGACTGTAAAAATGTTATTGAAGAAATGAAATCTACTCTGATTTCCAAAGGTTACAGATTGCCCAAACAAATGACCTCGTAAGTTGTTTTTGAATTATACAATAGTAGATAAATGTAGTTTAAAGGTTCAATGTTTTTGATCAATACAATTAATGAAAAATTCTTTCAGGCAAGAACTCATCCTTTTTGAAGTTGTTATGGTCTTGAAAGGAGTCGATTTGAAACTTGATTTTAGCAAACGATCCTTCGAACAACACCAGAAAAAATGACCAGGGAAGAAAGACAAGAATTGAAAAAAACAAGAGAGCAGTATCGAAGGAACAAAATTGATGCAGCTTGTTCACATTTAGAAGAGTTCCTCATCATGAACGATTTGAACGGAATATTTGGGTAAGTAAAAACAATCATTTCAAAACTTTGGATATAATGAATCGCGGAAATTGTTAGTAAACTACATGTGTTCCAGGTATCATTAAATTTGAGAGTTTTTTGAGTTTGAATATTCAGGGGCCAGTAGCAGGCATGTCAATGAATGAGGGCGGAGTTGAACTTTTCCGAGAGGCAAGAATTCCAGCAATGCTGTGTTTGAGAGATGGTGACAATGGAGCCTGAGAGGTGATATCTGGGAGAGCTTTGAGACGGTCTCTGACAAGTTGCAGCATTTGGAGTCGCGTCAATTTTGATCTGAAAAAAATATTGGGATAAAAAGAATATGTGAAAAAACTATGCTACTGGCCCCTGAATATTCAAACTCAAAAAACTCTCAAATTTAATGATACCTGGAACACATGTAGTTTACTAACAATTTCCGCGATTCATTATATCCAAAGTTTTGAAATGATTGTTTTTACTTACCCAAATATTCCGTTCAAATCGTTCATGAT</canonical>
            <polymorphic>TCAATTTTCGTATTGTGTAATGAATTTGAATATTTTAGATTATCTATCATGCATCCAACTGTCTATGATATGCCTTATTTGATCCAAAAATCGAAAGTGGAGAAAAAGCGAGTGGCAGACTGTAAAAATGTTATTGAAGAAATGAAATCTACTCTGATTTCCAAAGGTTACAGATTGCCCAAACAAATGACCTCGTAAGTTGTTTTTGAATTATACAATAGTAGATAAATGTAGTTTAAAGGTTCAATGTTTTTGATCAATACAATTAATGAAAAATTCTTTCAGGCAAGAACTCATCCTTTTTGAAGTTGTTATGGTCTTGAAAGGAGTCGATTTGAAACTTGATTTTAGCAAACGATCCTTCGAACAACACCAGAAAAAATGACCAGGGAAGAAAGACAAGAATTGAAAAAAACAAGAGAGCAGTATCGAAGGAACAAAATTGATGCAGCTTGTTCACATTTAGAAGAGTTCCTCATCATGAACGATTTGAACGGAARATTTGGGTAAGTAAAAACAATCATTTCAAAACTTTGGATATAATGAATCGCGGAAATTGTTAGTAAACTACATGTGTTCCAGGTATCATTAAATTTGAGAGTTTTTTGAGTTTGAATATTCAGGGGCCAGTAGCAGGCATGTCAATGAATGAGGGCGGAGTTGAACTTTTCCGAGAGGCAAGAATTCCAGCAATGCTGTGTTTGAGAGATGGTGACAATGGAGCCTGAGAGGTGATATCTGGGAGAGCTTTGAGACGGTCTCTGACAAGTTGCAGCATTTGGAGTCGCGTCAATTTTGATCTGAAAAAAATATTGGGATAAAAAGAATATGTGAAAAAACTATGCTACTGGCCCCTGAATATTCAAACTCAAAAAACTCTCAAATTTAATGATACCTGGAACACATGTAGTTTACTAACAATTTCCGCGATTCATTATATCCAAAGTTTTGAAATGATTGTTTTTACTTACCCAAATATTCCGTTCAAATCGTTCATGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>469 194 117 117 49 31 23</canonical_bands>
                <polymorphic_bands>586 194 117 49 31 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGATTTTAGCAAACGATCC</pcr_primer_p1>
		<pcr_primer_p2>AATTTAATGATACCTGGAACACA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTGATTTTAGCAAACGATCCTTCGAACAACACCAGAAAAAATGACCAGGGAAGAAAGACAAGAATTGAAAAAAACAAGAGAGCAGTATCGAAGGAACAAAATTGATGCAGCTTGTTCACATTTAGAAGAGTTCCTCATCATGAACGATTTGAACGGAATATTTGGGTAAGTAAAAACAATCATTTCAAAACTTTGGATATAATGAATCGCGGAAATTGTTAGTAAACTACATGTGTTCCAGGTATCATTAAATT</canonical_amplicon>
		<polymorphic_amplicon>TTGATTTTAGCAAACGATCCTTCGAACAACACCAGAAAAAATGACCAGGGAAGAAAGACAAGAATTGAAAAAAACAAGAGAGCAGTATCGAAGGAACAAAATTGATGCAGCTTGTTCACATTTAGAAGAGTTCCTCATCATGAACGATTTGAACGGAARATTTGGGTAAGTAAAAACAATCATTTCAAAACTTTGGATATAATGAATCGCGGAAATTGTTAGTAAACTACATGTGTTCCAGGTATCATTAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27369</snp_id>
        <super_contig>c003101659.Contig1</super_contig>
        <contig_pos>3236</contig_pos>
        <strand>-</strand>
        <context>ARATTTGGGT[A/T]AGTAAAAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACATTTAGAAGAGTTCCTCATCATGAACGATTTGAACGGAATATTTGGGT</left_flank>
        <right_flank>AGTAAAAACAATCATTTCAAAACTTTGGATATAATGAATCGCGGAAATTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATTGTGTAATGAATTTGAATATTTTAGATTATCTATCATGCATCCAACTGTCTATGATATGCCTTATTTGATCCAAAAATCGAAAGTGGAGAAAAAGCGAGTGGCAGACTGTAAAAATGTTATTGAAGAAATGAAATCTACTCTGATTTCCAAAGGTTACAGATTGCCCAAACAAATGACCTCGTAAGTTGTTTTTGAATTATACAATAGTAGATAAATGTAGTTTAAAGGTTCAATGTTTTTGATCAATACAATTAATGAAAAATTCTTTCAGGCAAGAACTCATCCTTTTTGAAGTTGTTATGGTCTTGAAAGGAGTCGATTTGAAACTTGATTTTAGCAAACGATCCTTCGAACAACACCAGAAAAAATGACCAGGGAAGAAAGACAAGAATTGAAAAAAACAAGAGAGCAGTATCGAAGGAACAAAATTGATGCAGCTTGTTCACATTTAGAAGAGTTCCTCATCATGAACGATTTGAACGGAATATTTGGGTAAGTAAAAACAATCATTTCAAAACTTTGGATATAATGAATCGCGGAAATTGTTAGTAAACTACATGTGTTCCAGGTATCATTAAATTTGAGAGTTTTTTGAGTTTGAATATTCAGGGGCCAGTAGCAGGCATGTCAATGAATGAGGGCGGAGTTGAACTTTTCCGAGAGGCAAGAATTCCAGCAATGCTGTGTTTGAGAGATGGTGACAATGGAGCCTGAGAGGTGATATCTGGGAGAGCTTTGAGACGGTCTCTGACAAGTTGCAGCATTTGGAGTCGCGTCAATTTTGATCTGAAAAAAATATTGGGATAAAAAGAATATGTGAAAAAACTATGCTACTGGCCCCTGAATATTCAAACTCAAAAAACTCTCAAATTTAATGATACCTGGAACACATGTAGTTTACTAACAATTTCCGCGATTCATTATATCCAAAGTTTTGAAATGATTGTTTTTACTTACCCAAATATTCCGTTCAAATCGTTCATGATGAGGAACTC</canonical>
            <polymorphic>GTATTGTGTAATGAATTTGAATATTTTAGATTATCTATCATGCATCCAACTGTCTATGATATGCCTTATTTGATCCAAAAATCGAAAGTGGAGAAAAAGCGAGTGGCAGACTGTAAAAATGTTATTGAAGAAATGAAATCTACTCTGATTTCCAAAGGTTACAGATTGCCCAAACAAATGACCTCGTAAGTTGTTTTTGAATTATACAATAGTAGATAAATGTAGTTTAAAGGTTCAATGTTTTTGATCAATACAATTAATGAAAAATTCTTTCAGGCAAGAACTCATCCTTTTTGAAGTTGTTATGGTCTTGAAAGGAGTCGATTTGAAACTTGATTTTAGCAAACGATCCTTCGAACAACACCAGAAAAAATGACCAGGGAAGAAAGACAAGAATTGAAAAAAACAAGAGAGCAGTATCGAAGGAACAAAATTGATGCAGCTTGTTCACATTTAGAAGAGTTCCTCATCATGAACGATTTGAACGGAATATTTGGGTWAGTAAAAACAATCATTTCAAAACTTTGGATATAATGAATCGCGGAAATTGTTAGTAAACTACATGTGTTCCAGGTATCATTAAATTTGAGAGTTTTTTGAGTTTGAATATTCAGGGGCCAGTAGCAGGCATGTCAATGAATGAGGGCGGAGTTGAACTTTTCCGAGAGGCAAGAATTCCAGCAATGCTGTGTTTGAGAGATGGTGACAATGGAGCCTGAGAGGTGATATCTGGGAGAGCTTTGAGACGGTCTCTGACAAGTTGCAGCATTTGGAGTCGCGTCAATTTTGATCTGAAAAAAATATTGGGATAAAAAGAATATGTGAAAAAACTATGCTACTGGCCCCTGAATATTCAAACTCAAAAAACTCTCAAATTTAATGATACCTGGAACACATGTAGTTTACTAACAATTTCCGCGATTCATTATATCCAAAGTTTTGAAATGATTGTTTTTACTTACCCAAATATTCCGTTCAAATCGTTCATGATGAGGAACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGATTTTAGCAAACGATCC</pcr_primer_p1>
		<pcr_primer_p2>AATTTAATGATACCTGGAACACA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTGATTTTAGCAAACGATCCTTCGAACAACACCAGAAAAAATGACCAGGGAAGAAAGACAAGAATTGAAAAAAACAAGAGAGCAGTATCGAAGGAACAAAATTGATGCAGCTTGTTCACATTTAGAAGAGTTCCTCATCATGAACGATTTGAACGGAATATTTGGGTAAGTAAAAACAATCATTTCAAAACTTTGGATATAATGAATCGCGGAAATTGTTAGTAAACTACATGTGTTCCAGGTATCATTAAATT</canonical_amplicon>
		<polymorphic_amplicon>TTGATTTTAGCAAACGATCCTTCGAACAACACCAGAAAAAATGACCAGGGAAGAAAGACAAGAATTGAAAAAAACAAGAGAGCAGTATCGAAGGAACAAAATTGATGCAGCTTGTTCACATTTAGAAGAGTTCCTCATCATGAACGATTTGAACGGAATATTTGGGTWAGTAAAAACAATCATTTCAAAACTTTGGATATAATGAATCGCGGAAATTGTTAGTAAACTACATGTGTTCCAGGTATCATTAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27370</snp_id>
        <super_contig>c003101659.Contig1</super_contig>
        <contig_pos>4054</contig_pos>
        <strand>+</strand>
        <context>GGAAATCAGA[A/G]TAGATTTCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAACTTACGAGGTCATTTGTTTGGGCAATCTGTAACCTTTGGAAATCAGA</left_flank>
        <right_flank>TAGATTTCATTTCTTCAATAACATTTTTACAGTCTGCCACTCGCTTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGTGAAAAAACTATGCTACTGGCCCCTGAATATTCAAACTCAAAAAACTCTCAAATTTAATGATACCTGGAACACATGTAGTTTACTAACAATTTCCGCGATTCATTATATCCAAAGTTTTGAAATGATTGTTTTTACTTACCCAAATATTCCGTTCAAATCGTTCATGATGAGGAACTCTTCTAAATGTGAACAAGCTGCATCAATTTTGTTCCTTCGATACTGCTCTCTTGTTTTTTTCAATTCTTGTCTTTCTTCCCTGGTCATTTTTTCTGGTGTTGTTCGAAGGACTCGTTTGCTAAAATCAAGTTTCAAATCGACTCCTTTCAAGACCATAACAACTTCAAAAAGGATGAGTTCTTGCCTGAAAGAATTTTTCATTAATTGTATTGATCAAAAACATTGAACCTTTAAACTACATTTATCTACTATTGTATAATTCAAAAACAACTTACGAGGTCATTTGTTTGGGCAATCTGTAACCTTTGGAAATCAGAGTAGATTTCATTTCTTCAATAACATTTTTACAGTCTGCCACTCGCTTTTTCTCCACTTTCGATTTTTGGATCAAATAAGGCATATCATAGACAGTTGGATGCATGATAGATAATCTAAAATATTCAAATTCATTACACAATACGAAAATTGAAGGCAATAAGAAAGATGGTGAAACAATAACGAACCGGGCGGAAGAAAAAAAATCAGAAATGATGAATGTCCTGCTCTCATGTTGGTTTTTTCTCAGAATTTCTGTCTTCACATTACTTGGGAAGCCACGCCCCTTTCCCACAGGTAACACCTCAACGATGCATGGGAATATCCTGAAACAAGAACCGTGTGTCTCTTTAGCAACCTGACACTAAGTCCATGATGTTTCATTTTCCCATAACACGTAAATGGTAGACCGTGACGGATGGGTTGGAAAGTCTGTGAAAATATATGGAGCATGGGAAAATAGATATCAGGGCTCGCCATATTAAAAAAATTACTGGTTAGCT</canonical>
            <polymorphic>TATGTGAAAAAACTATGCTACTGGCCCCTGAATATTCAAACTCAAAAAACTCTCAAATTTAATGATACCTGGAACACATGTAGTTTACTAACAATTTCCGCGATTCATTATATCCAAAGTTTTGAAATGATTGTTTTTACTTACCCAAATATTCCGTTCAAATCGTTCATGATGAGGAACTCTTCTAAATGTGAACAAGCTGCATCAATTTTGTTCCTTCGATACTGCTCTCTTGTTTTTTTCAATTCTTGTCTTTCTTCCCTGGTCATTTTTTCTGGTGTTGTTCGAAGGACTCGTTTGCTAAAATCAAGTTTCAAATCGACTCCTTTCAAGACCATAACAACTTCAAAAAGGATGAGTTCTTGCCTGAAAGAATTTTTCATTAATTGTATTGATCAAAAACATTGAACCTTTAAACTACATTTATCTACTATTGTATAATTCAAAAACAACTTACGAGGTCATTTGTTTGGGCAATCTGTAACCTTTGGAAATCAGARTAGATTTCATTTCTTCAATAACATTTTTACAGTCTGCCACTCGCTTTTTCTCCACTTTCGATTTTTGGATCAAATAAGGCATATCATAGACAGTTGGATGCATGATAGATAATCTAAAATATTCAAATTCATTACACAATACGAAAATTGAAGGCAATAAGAAAGATGGTGAAACAATAACGAACCGGGCGGAAGAAAAAAAATCAGAAATGATGAATGTCCTGCTCTCATGTTGGTTTTTTCTCAGAATTTCTGTCTTCACATTACTTGGGAAGCCACGCCCCTTTCCCACAGGTAACACCTCAACGATGCATGGGAATATCCTGAAACAAGAACCGTGTGTCTCTTTAGCAACCTGACACTAAGTCCATGATGTTTCATTTTCCCATAACACGTAAATGGTAGACCGTGACGGATGGGTTGGAAAGTCTGTGAAAATATATGGAGCATGGGAAAATAGATATCAGGGCTCGCCATATTAAAAAAATTACTGGTTAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAACATTGAACCTTTAAACT</pcr_primer_p1>
		<pcr_primer_p2>TTCGTATTGTGTAATGAATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAAAACATTGAACCTTTAAACTACATTTATCTACTATTGTATAATTCAAAAACAACTTACGAGGTCATTTGTTTGGGCAATCTGTAACCTTTGGAAATCAGAGTAGATTTCATTTCTTCAATAACATTTTTACAGTCTGCCACTCGCTTTTTCTCCACTTTCGATTTTTGGATCAAATAAGGCATATCATAGACAGTTGGATGCATGATAGATAATCTAAAATATTCAAATTCATTACACAATACGAA</canonical_amplicon>
		<polymorphic_amplicon>CAAAAACATTGAACCTTTAAACTACATTTATCTACTATTGTATAATTCAAAAACAACTTACGAGGTCATTTGTTTGGGCAATCTGTAACCTTTGGAAATCAGARTAGATTTCATTTCTTCAATAACATTTTTACAGTCTGCCACTCGCTTTTTCTCCACTTTCGATTTTTGGATCAAATAAGGCATATCATAGACAGTTGGATGCATGATAGATAATCTAAAATATTCAAATTCATTACACAATACGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27371</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>48945</contig_pos>
        <strand>+</strand>
        <context>CACAAAAACA[A/T]AGTTGAGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATAAGCTGTAATTTTATGATGTGTCATGACAATTTCTGAGCACAAAAACA</left_flank>
        <right_flank>AGTTGAGAAATTTTCTCAAAGTTCAAAATGATCAGATGATGTTAAGTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTCGGAATCGTACTTTTCATAATTTCTCCAATTGGTGCTTTTATAGTTTTTGTGCAATCCGGAATGAAAAGAGAGGACCAAATGGCTCATATAGTATCAAAGTGTCCAGAATTCATAAACCAGTTTTCTACACTTTCAAATTTCGCAATCTATGAATTCAACATTTGGAGCTTATTTCTAGCAGGAGGAGCTTGTTTAGGAGCATTGGTCTGTGGAGCAGCTTTCACTTTGATCACAATGGACATCTTTAGAATGCTCAAAACTTTACAGAAGAAAGTTTCGGCGACTAGTTTTAAAAAGTACCAAAATGCTGTGAAAAGTTTGTTAGTTCAATTTGCAACGTCTGGATTGTTATTGGTTCCGCTGTCTGGTTTTGTGTTATTCACGCTGTTTACTTTCGAAAGAGCACAAGGTATGTAATTTAGAATTTGAACTTAAATACTAGTCATAAGCTGTAATTTTATGATGTGTCATGACAATTTCTGAGCACAAAAACAAAGTTGAGAAATTTTCTCAAAGTTCAAAATGATCAGATGATGTTAAGTTCAGAAATTCGAAGCCCGTAATAGAAGGCCCCCCCCCCTAACTATGAACTTCGAGCCAATTTATCTCAGTTCCTGTTCGCGATATCAAAAAGTCGCCCACTGATAAATTTCTTATCATAATGTCACAAACATTTTATCAGTTGACACATATTACATATCTATCACATGAATCGAGATATATGGGCTCAAACTTGACAGTGTGGGTGCTCTTCTATAACGGGTTTGACGGCAATTCGTCCAAATTGTCTATTTGTTTCAGTTTTTGTCGAAATCACTTTACTAATCGGAGCCCTCCACCCAATTGTAAATGCTATCGTTCTAACAATGACAACTTCTCAATTTAGAGATGTTTTATTCGGGTGAGATTTGTTTTGTTTCTACAGTAATCCAAGTTTTTATTTTTTGAATTTCAGAAAATCTTCAATTTTCTGGATTTTTCTTTTTAAAAAAGTA</canonical>
            <polymorphic>TCGTCGGAATCGTACTTTTCATAATTTCTCCAATTGGTGCTTTTATAGTTTTTGTGCAATCCGGAATGAAAAGAGAGGACCAAATGGCTCATATAGTATCAAAGTGTCCAGAATTCATAAACCAGTTTTCTACACTTTCAAATTTCGCAATCTATGAATTCAACATTTGGAGCTTATTTCTAGCAGGAGGAGCTTGTTTAGGAGCATTGGTCTGTGGAGCAGCTTTCACTTTGATCACAATGGACATCTTTAGAATGCTCAAAACTTTACAGAAGAAAGTTTCGGCGACTAGTTTTAAAAAGTACCAAAATGCTGTGAAAAGTTTGTTAGTTCAATTTGCAACGTCTGGATTGTTATTGGTTCCGCTGTCTGGTTTTGTGTTATTCACGCTGTTTACTTTCGAAAGAGCACAAGGTATGTAATTTAGAATTTGAACTTAAATACTAGTCATAAGCTGTAATTTTATGATGTGTCATGACAATTTCTGAGCACAAAAACAWAGTTGAGAAATTTTCTCAAAGTTCAAAATGATCAGATGATGTTAAGTTCAGAAATTCGAAGCCCGTAATAGAAGGCCCCCCCCCCTAACTATGAACTTCGAGCCAATTTATCTCAGTTCCTGTTCGCGATATCAAAAAGTCGCCCACTGATAAATTTCTTATCATAATGTCACAAACATTTTATCAGTTGACACATATTACATATCTATCACATGAATCGAGATATATGGGCTCAAACTTGACAGTGTGGGTGCTCTTCTATAACGGGTTTGACGGCAATTCGTCCAAATTGTCTATTTGTTTCAGTTTTTGTCGAAATCACTTTACTAATCGGAGCCCTCCACCCAATTGTAAATGCTATCGTTCTAACAATGACAACTTCTCAATTTAGAGATGTTTTATTCGGGTGAGATTTGTTTTGTTTCTACAGTAATCCAAGTTTTTATTTTTTGAATTTCAGAAAATCTTCAATTTTCTGGATTTTTCTTTTTAAAAAAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGCTGTGAAAAGTTTGTTAG</pcr_primer_p1>
		<pcr_primer_p2>AATTTCTGAACTTAACATCATCTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATGCTGTGAAAAGTTTGTTAGTTCAATTTGCAACGTCTGGATTGTTATTGGTTCCGCTGTCTGGTTTTGTGTTATTCACGCTGTTTACTTTCGAAAGAGCACAAGGTATGTAATTTAGAATTTGAACTTAAATACTAGTCATAAGCTGTAATTTTATGATGTGTCATGACAATTTCTGAGCACAAAAACAAAGTTGAGAAATTTTCTCAAAGTTCAAAATGATCAGATGATGTTAAGTTCAGAAATT</canonical_amplicon>
		<polymorphic_amplicon>AAATGCTGTGAAAAGTTTGTTAGTTCAATTTGCAACGTCTGGATTGTTATTGGTTCCGCTGTCTGGTTTTGTGTTATTCACGCTGTTTACTTTCGAAAGAGCACAAGGTATGTAATTTAGAATTTGAACTTAAATACTAGTCATAAGCTGTAATTTTATGATGTGTCATGACAATTTCTGAGCACAAAAACAWAGTTGAGAAATTTTCTCAAAGTTCAAAATGATCAGATGATGTTAAGTTCAGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27372</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>67626</contig_pos>
        <strand>+</strand>
        <context>TCACTTTCTT[C/T]AAAGATGGGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCGAAAATATAAAATATTGCATTTTTTTGTACTAATTTTCACTTTCTT</left_flank>
        <right_flank>AAAGATGGGGGCGGAAAAATTCGAAAAATGGAAAAAAGGAAAAAAAAACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGAATCGCGAGCTTTTCTACTCAATGGAGCGCGCTTGCCCGCCGCCGAAAATCTTGGCACATTTGGTCGGAAAAATGGGGTTTCATCAATTTCCGTCGTTTTCCTCAAAATTTCTTTCGTATTGAATCGTTTTTTAGTTCAAAACACACACATTTCATATGCAAAATGAGCCAGTTTGGACCAAAAATACAGATTTTCCAACATTTCGAAATACTGAAATTCCTGAAAATTTTGGTTTTGAGAAAATTTTTTTTGAAATAAACTGTAAAATAGCGATTTTCGAATTTTTTTAAGCTTTCTTTTCGTTAAAAAATTTCGAAAAATATAAATATTAGAATTTTCAAAAAATCGCAAAAATGTTTATTTTCATATTCAGAATTTTTCATAACGAGGTATTGCTTAAAAATGGTTAATTTTTGACTTTTTGAAAAATAAGAATTCTGAAACTTTCCGAAAATATAAAATATTGCATTTTTTTGTACTAATTTTCACTTTCTTCAAAGATGGGGGCGGAAAAATTCGAAAAATGGAAAAAAGGAAAAAAAAACAAATTTTCTGCATAAAAATATCAAATCGCGCTCTGCAAAAAAGAAAAAAATGCAGTGCAAAAAATGCCAAATTAAAAAAAAGCAACGAAAAAAAAATATTTTTTGCACACGACATTCGTGTAGTCCTCTCGGACAATCGGTCGACAGTGTGTGGCTAATGAGACGCAGACAGTGGGAGGGATTAGATGGAGAGTGCGGCCAAATTGAAAGAAGACAATTTCGAAAAAATTCATTTATTCACAACCAAATTCAAACAGCACAGCAACAAAAAAATATGCAAAATAAAAATTTCAAAAAATACAAAGAACTCATTTCGGGATCAAATTCGAGTGATTTCCCAAAATCATATGTGTGGTGAATTCATATTTATTCTGAAACTGAATTCCACACAATCCACATTTTAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATATCGTACATGAAGT</canonical>
            <polymorphic>TCGAATCGCGAGCTTTTCTACTCAATGGAGCGCGCTTGCCCGCCGCCGAAAATCTTGGCACATTTGGTCGGAAAAATGGGGTTTCATCAATTTCCGTCGTTTTCCTCAAAATTTCTTTCGTATTGAATCGTTTTTTAGTTCAAAACACACACATTTCATATGCAAAATGAGCCAGTTTGGACCAAAAATACAGATTTTCCAACATTTCGAAATACTGAAATTCCTGAAAATTTTGGTTTTGAGAAAATTTTTTTTGAAATAAACTGTAAAATAGCGATTTTCGAATTTTTTTAAGCTTTCTTTTCGTTAAAAAATTTCGAAAAATATAAATATTAGAATTTTCAAAAAATCGCAAAAATGTTTATTTTCATATTCAGAATTTTTCATAACGAGGTATTGCTTAAAAATGGTTAATTTTTGACTTTTTGAAAAATAAGAATTCTGAAACTTTCCGAAAATATAAAATATTGCATTTTTTTGTACTAATTTTCACTTTCTTYAAAGATGGGGGCGGAAAAATTCGAAAAATGGAAAAAAGGAAAAAAAAACAAATTTTCTGCATAAAAATATCAAATCGCGCTCTGCAAAAAAGAAAAAAATGCAGTGCAAAAAATGCCAAATTAAAAAAAAGCAACGAAAAAAAAATATTTTTTGCACACGACATTCGTGTAGTCCTCTCGGACAATCGGTCGACAGTGTGTGGCTAATGAGACGCAGACAGTGGGAGGGATTAGATGGAGAGTGCGGCCAAATTGAAAGAAGACAATTTCGAAAAAATTCATTTATTCACAACCAAATTCAAACAGCACAGCAACAAAAAAATATGCAAAATAAAAATTTCAAAAAATACAAAGAACTCATTTCGGGATCAAATTCGAGTGATTTCCCAAAATCATATGTGTGGTGAATTCATATTTATTCTGAAACTGAATTCCACACAATCCACATTTTAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATATCGTACATGAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAACTTTCCGAAAATATAAAA</pcr_primer_p1>
		<pcr_primer_p2>GATTGTCCGAGAGGACTACA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TGAAACTTTCCGAAAATATAAAATATTGCATTTTTTTGTACTAATTTTCACTTTCTTCAAAGATGGGGGCGGAAAAATTCGAAAAATGGAAAAAAGGAAAAAAAAACAAATTTTCTGCATAAAAATATCAAATCGCGCTCTGCAAAAAAGAAAAAAATGCAGTGCAAAAAATGCCAAATTAAAAAAAAGCAACGAAAAAAAAATATTTTTTGCACACGACATTCGTGTAGTCCTCTCGGACAATC</canonical_amplicon>
		<polymorphic_amplicon>TGAAACTTTCCGAAAATATAAAATATTGCATTTTTTTGTACTAATTTTCACTTTCTTYAAAGATGGGGGCGGAAAAATTCGAAAAATGGAAAAAAGGAAAAAAAAACAAATTTTCTGCATAAAAATATCAAATCGCGCTCTGCAAAAAAGAAAAAAATGCAGTGCAAAAAATGCCAAATTAAAAAAAAGCAACGAAAAAAAAATATTTTTTGCACACGACATTCGTGTAGTCCTCTCGGACAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27373</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>67679</contig_pos>
        <strand></strand>
        <context>AAAAAACAAA[T/A]TTTCTGCATA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGATGGGGGCGGAAAAATTCGAAAAATGGAAAAAAGGAAAAAAAAACAAA</left_flank>
        <right_flank>TTTCTGCATAAAAATATCAAATCGCGCTCTGCAAAAAAGAAAAAAATGCA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTGGCACATTTGGTCGGAAAAATGGGGTTTCATCAATTTCCGTCGTTTTCCTCAAAATTTCTTTCGTATTGAATCGTTTTTTAGTTCAAAACACACACATTTCATATGCAAAATGAGCCAGTTTGGACCAAAAATACAGATTTTCCAACATTTCGAAATACTGAAATTCCTGAAAATTTTGGTTTTGAGAAAATTTTTTTTGAAATAAACTGTAAAATAGCGATTTTCGAATTTTTTTAAGCTTTCTTTTCGTTAAAAAATTTCGAAAAATATAAATATTAGAATTTTCAAAAAATCGCAAAAATGTTTATTTTCATATTCAGAATTTTTCATAACGAGGTATTGCTTAAAAATGGTTAATTTTTGACTTTTTGAAAAATAAGAATTCTGAAACTTTCCGAAAATATAAAATATTGCATTTTTTTGTACTAATTTTCACTTTCTTCAAAGATGGGGGCGGAAAAATTCGAAAAATGGAAAAAAGGAAAAAAAAACAAATTTTCTGCATAAAAATATCAAATCGCGCTCTGCAAAAAAGAAAAAAATGCAGTGCAAAAAATGCCAAATTAAAAAAAAGCAACGAAAAAAAAATATTTTTTGCACACGACATTCGTGTAGTCCTCTCGGACAATCGGTCGACAGTGTGTGGCTAATGAGACGCAGACAGTGGGAGGGATTAGATGGAGAGTGCGGCCAAATTGAAAGAAGACAATTTCGAAAAAATTCATTTATTCACAACCAAATTCAAACAGCACAGCAACAAAAAAATATGCAAAATAAAAATTTCAAAAAATACAAAGAACTCATTTCGGGATCAAATTCGAGTGATTTCCCAAAATCATATGTGTGGTGAATTCATATTTATTCTGAAACTGAATTCCACACAATCCACATTTTAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATATCGTACATGAAGTAGACTTTGAATGTAATTCCACATGTAGTGCAGGACTGAAAATTGGATTTCAGA</canonical>
            <polymorphic>CTTGGCACATTTGGTCGGAAAAATGGGGTTTCATCAATTTCCGTCGTTTTCCTCAAAATTTCTTTCGTATTGAATCGTTTTTTAGTTCAAAACACACACATTTCATATGCAAAATGAGCCAGTTTGGACCAAAAATACAGATTTTCCAACATTTCGAAATACTGAAATTCCTGAAAATTTTGGTTTTGAGAAAATTTTTTTTGAAATAAACTGTAAAATAGCGATTTTCGAATTTTTTTAAGCTTTCTTTTCGTTAAAAAATTTCGAAAAATATAAATATTAGAATTTTCAAAAAATCGCAAAAATGTTTATTTTCATATTCAGAATTTTTCATAACGAGGTATTGCTTAAAAATGGTTAATTTTTGACTTTTTGAAAAATAAGAATTCTGAAACTTTCCGAAAATATAAAATATTGCATTTTTTTGTACTAATTTTCACTTTCTTCAAAGATGGGGGCGGAAAAATTCGAAAAATGGAAAAAAGGAAAAAAAAACAAAWTTTCTGCATAAAAATATCAAATCGCGCTCTGCAAAAAAGAAAAAAATGCAGTGCAAAAAATGCCAAATTAAAAAAAAGCAACGAAAAAAAAATATTTTTTGCACACGACATTCGTGTAGTCCTCTCGGACAATCGGTCGACAGTGTGTGGCTAATGAGACGCAGACAGTGGGAGGGATTAGATGGAGAGTGCGGCCAAATTGAAAGAAGACAATTTCGAAAAAATTCATTTATTCACAACCAAATTCAAACAGCACAGCAACAAAAAAATATGCAAAATAAAAATTTCAAAAAATACAAAGAACTCATTTCGGGATCAAATTCGAGTGATTTCCCAAAATCATATGTGTGGTGAATTCATATTTATTCTGAAACTGAATTCCACACAATCCACATTTTAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATATCGTACATGAAGTAGACTTTGAATGTAATTCCACATGTAGTGCAGGACTGAAAATTGGATTTCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>225 124 109 80 60 56 41 40 38 36 35 33 29 24 23 20 17 10</canonical_bands>
                <polymorphic_bands>258 124 109 80 60 56 41 40 38 36 35 29 24 23 20 17 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>132 109 84 68 47 41 40 38 36 35 35 35 33 33 29 26 25 24 23 21 20 17 14 14 11 10</canonical_bands>
                <polymorphic_bands>132 109 101 84 47 41 40 38 36 35 35 35 33 29 26 25 24 23 21 20 17 14 14 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAACTTTCCGAAAATATAAAA</pcr_primer_p1>
		<pcr_primer_p2>GATTGTCCGAGAGGACTACA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TGAAACTTTCCGAAAATATAAAATATTGCATTTTTTTGTACTAATTTTCACTTTCTTCAAAGATGGGGGCGGAAAAATTCGAAAAATGGAAAAAAGGAAAAAAAAACAAATTTTCTGCATAAAAATATCAAATCGCGCTCTGCAAAAAAGAAAAAAATGCAGTGCAAAAAATGCCAAATTAAAAAAAAGCAACGAAAAAAAAATATTTTTTGCACACGACATTCGTGTAGTCCTCTCGGACAATC</canonical_amplicon>
		<polymorphic_amplicon>TGAAACTTTCCGAAAATATAAAATATTGCATTTTTTTGTACTAATTTTCACTTTCTTCAAAGATGGGGGCGGAAAAATTCGAAAAATGGAAAAAAGGAAAAAAAAACAAAWTTTCTGCATAAAAATATCAAATCGCGCTCTGCAAAAAAGAAAAAAATGCAGTGCAAAAAATGCCAAATTAAAAAAAAGCAACGAAAAAAAAATATTTTTTGCACACGACATTCGTGTAGTCCTCTCGGACAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27374</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>67716</contig_pos>
        <strand></strand>
        <context>CTCTGCAAAA[A/T]AGAAAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAAAAAACAAATTTTCTGCATAAAAATATCAAATCGCGCTCTGCAAAA</left_flank>
        <right_flank>AGAAAAAAATGCAGTGCAAAAAATGCCAAATTAAAAAAAAGCAACGAAAA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCGTCGTTTTCCTCAAAATTTCTTTCGTATTGAATCGTTTTTTAGTTCAAAACACACACATTTCATATGCAAAATGAGCCAGTTTGGACCAAAAATACAGATTTTCCAACATTTCGAAATACTGAAATTCCTGAAAATTTTGGTTTTGAGAAAATTTTTTTTGAAATAAACTGTAAAATAGCGATTTTCGAATTTTTTTAAGCTTTCTTTTCGTTAAAAAATTTCGAAAAATATAAATATTAGAATTTTCAAAAAATCGCAAAAATGTTTATTTTCATATTCAGAATTTTTCATAACGAGGTATTGCTTAAAAATGGTTAATTTTTGACTTTTTGAAAAATAAGAATTCTGAAACTTTCCGAAAATATAAAATATTGCATTTTTTTGTACTAATTTTCACTTTCTTCAAAGATGGGGGCGGAAAAATTCGAAAAATGGAAAAAAGGAAAAAAAAACAAATTTTCTGCATAAAAATATCAAATCGCGCTCTGCAAAAAAGAAAAAAATGCAGTGCAAAAAATGCCAAATTAAAAAAAAGCAACGAAAAAAAAATATTTTTTGCACACGACATTCGTGTAGTCCTCTCGGACAATCGGTCGACAGTGTGTGGCTAATGAGACGCAGACAGTGGGAGGGATTAGATGGAGAGTGCGGCCAAATTGAAAGAAGACAATTTCGAAAAAATTCATTTATTCACAACCAAATTCAAACAGCACAGCAACAAAAAAATATGCAAAATAAAAATTTCAAAAAATACAAAGAACTCATTTCGGGATCAAATTCGAGTGATTTCCCAAAATCATATGTGTGGTGAATTCATATTTATTCTGAAACTGAATTCCACACAATCCACATTTTAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATATCGTACATGAAGTAGACTTTGAATGTAATTCCACATGTAGTGCAGGACTGAAAATTGGATTTCAGAATTATAGTTTGAGCTCAGTTATCTCGGTTCTTTTGAA</canonical>
            <polymorphic>TTTCCGTCGTTTTCCTCAAAATTTCTTTCGTATTGAATCGTTTTTTAGTTCAAAACACACACATTTCATATGCAAAATGAGCCAGTTTGGACCAAAAATACAGATTTTCCAACATTTCGAAATACTGAAATTCCTGAAAATTTTGGTTTTGAGAAAATTTTTTTTGAAATAAACTGTAAAATAGCGATTTTCGAATTTTTTTAAGCTTTCTTTTCGTTAAAAAATTTCGAAAAATATAAATATTAGAATTTTCAAAAAATCGCAAAAATGTTTATTTTCATATTCAGAATTTTTCATAACGAGGTATTGCTTAAAAATGGTTAATTTTTGACTTTTTGAAAAATAAGAATTCTGAAACTTTCCGAAAATATAAAATATTGCATTTTTTTGTACTAATTTTCACTTTCTTCAAAGATGGGGGCGGAAAAATTCGAAAAATGGAAAAAAGGAAAAAAAAACAAATTTTCTGCATAAAAATATCAAATCGCGCTCTGCAAAAWAGAAAAAAATGCAGTGCAAAAAATGCCAAATTAAAAAAAAGCAACGAAAAAAAAATATTTTTTGCACACGACATTCGTGTAGTCCTCTCGGACAATCGGTCGACAGTGTGTGGCTAATGAGACGCAGACAGTGGGAGGGATTAGATGGAGAGTGCGGCCAAATTGAAAGAAGACAATTTCGAAAAAATTCATTTATTCACAACCAAATTCAAACAGCACAGCAACAAAAAAATATGCAAAATAAAAATTTCAAAAAATACAAAGAACTCATTTCGGGATCAAATTCGAGTGATTTCCCAAAATCATATGTGTGGTGAATTCATATTTATTCTGAAACTGAATTCCACACAATCCACATTTTAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATATCGTACATGAAGTAGACTTTGAATGTAATTCCACATGTAGTGCAGGACTGAAAATTGGATTTCAGAATTATAGTTTGAGCTCAGTTATCTCGGTTCTTTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAACTTTCCGAAAATATAAAA</pcr_primer_p1>
		<pcr_primer_p2>GATTGTCCGAGAGGACTACA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TGAAACTTTCCGAAAATATAAAATATTGCATTTTTTTGTACTAATTTTCACTTTCTTCAAAGATGGGGGCGGAAAAATTCGAAAAATGGAAAAAAGGAAAAAAAAACAAATTTTCTGCATAAAAATATCAAATCGCGCTCTGCAAAAAAGAAAAAAATGCAGTGCAAAAAATGCCAAATTAAAAAAAAGCAACGAAAAAAAAATATTTTTTGCACACGACATTCGTGTAGTCCTCTCGGACAATC</canonical_amplicon>
		<polymorphic_amplicon>TGAAACTTTCCGAAAATATAAAATATTGCATTTTTTTGTACTAATTTTCACTTTCTTCAAAGATGGGGGCGGAAAAATTCGAAAAATGGAAAAAAGGAAAAAAAAACAAATTTTCTGCATAAAAATATCAAATCGCGCTCTGCAAAAWAGAAAAAAATGCAGTGCAAAAAATGCCAAATTAAAAAAAAGCAACGAAAAAAAAATATTTTTTGCACACGACATTCGTGTAGTCCTCTCGGACAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27375</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>67773</contig_pos>
        <strand>+</strand>
        <context>AAAAAAAAAT[A/G]TTTTTTGCAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATGCAGTGCAAAAAATGCCAAATTAAAAAAAAGCAACGAAAAAAAAAT</left_flank>
        <right_flank>TTTTTTGCACACGACATTCGTGTAGTCCTCTCGGACAATCGGTCGACAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACACATTTCATATGCAAAATGAGCCAGTTTGGACCAAAAATACAGATTTTCCAACATTTCGAAATACTGAAATTCCTGAAAATTTTGGTTTTGAGAAAATTTTTTTTGAAATAAACTGTAAAATAGCGATTTTCGAATTTTTTTAAGCTTTCTTTTCGTTAAAAAATTTCGAAAAATATAAATATTAGAATTTTCAAAAAATCGCAAAAATGTTTATTTTCATATTCAGAATTTTTCATAACGAGGTATTGCTTAAAAATGGTTAATTTTTGACTTTTTGAAAAATAAGAATTCTGAAACTTTCCGAAAATATAAAATATTGCATTTTTTTGTACTAATTTTCACTTTCTTCAAAGATGGGGGCGGAAAAATTCGAAAAATGGAAAAAAGGAAAAAAAAACAAATTTTCTGCATAAAAATATCAAATCGCGCTCTGCAAAAAAGAAAAAAATGCAGTGCAAAAAATGCCAAATTAAAAAAAAGCAACGAAAAAAAAATATTTTTTGCACACGACATTCGTGTAGTCCTCTCGGACAATCGGTCGACAGTGTGTGGCTAATGAGACGCAGACAGTGGGAGGGATTAGATGGAGAGTGCGGCCAAATTGAAAGAAGACAATTTCGAAAAAATTCATTTATTCACAACCAAATTCAAACAGCACAGCAACAAAAAAATATGCAAAATAAAAATTTCAAAAAATACAAAGAACTCATTTCGGGATCAAATTCGAGTGATTTCCCAAAATCATATGTGTGGTGAATTCATATTTATTCTGAAACTGAATTCCACACAATCCACATTTTAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATATCGTACATGAAGTAGACTTTGAATGTAATTCCACATGTAGTGCAGGACTGAAAATTGGATTTCAGAATTATAGTTTGAGCTCAGTTATCTCGGTTCTTTTGAAAGATGTCAAAATGGGTCACCTTATAAAATGTTTGTGATAACTTGGTAAACATATTGA</canonical>
            <polymorphic>CACACATTTCATATGCAAAATGAGCCAGTTTGGACCAAAAATACAGATTTTCCAACATTTCGAAATACTGAAATTCCTGAAAATTTTGGTTTTGAGAAAATTTTTTTTGAAATAAACTGTAAAATAGCGATTTTCGAATTTTTTTAAGCTTTCTTTTCGTTAAAAAATTTCGAAAAATATAAATATTAGAATTTTCAAAAAATCGCAAAAATGTTTATTTTCATATTCAGAATTTTTCATAACGAGGTATTGCTTAAAAATGGTTAATTTTTGACTTTTTGAAAAATAAGAATTCTGAAACTTTCCGAAAATATAAAATATTGCATTTTTTTGTACTAATTTTCACTTTCTTCAAAGATGGGGGCGGAAAAATTCGAAAAATGGAAAAAAGGAAAAAAAAACAAATTTTCTGCATAAAAATATCAAATCGCGCTCTGCAAAAAAGAAAAAAATGCAGTGCAAAAAATGCCAAATTAAAAAAAAGCAACGAAAAAAAAATRTTTTTTGCACACGACATTCGTGTAGTCCTCTCGGACAATCGGTCGACAGTGTGTGGCTAATGAGACGCAGACAGTGGGAGGGATTAGATGGAGAGTGCGGCCAAATTGAAAGAAGACAATTTCGAAAAAATTCATTTATTCACAACCAAATTCAAACAGCACAGCAACAAAAAAATATGCAAAATAAAAATTTCAAAAAATACAAAGAACTCATTTCGGGATCAAATTCGAGTGATTTCCCAAAATCATATGTGTGGTGAATTCATATTTATTCTGAAACTGAATTCCACACAATCCACATTTTAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATATCGTACATGAAGTAGACTTTGAATGTAATTCCACATGTAGTGCAGGACTGAAAATTGGATTTCAGAATTATAGTTTGAGCTCAGTTATCTCGGTTCTTTTGAAAGATGTCAAAATGGGTCACCTTATAAAATGTTTGTGATAACTTGGTAAACATATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 184 180 135</canonical_bands>
                <polymorphic_bands>681 184 135</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAACTTTCCGAAAATATAAAA</pcr_primer_p1>
		<pcr_primer_p2>TCTCATTAGCCACACACTGTC</pcr_primer_p2>
		<pcr_amplicon_size>270</pcr_amplicon_size>
		<canonical_amplicon>TGAAACTTTCCGAAAATATAAAATATTGCATTTTTTTGTACTAATTTTCACTTTCTTCAAAGATGGGGGCGGAAAAATTCGAAAAATGGAAAAAAGGAAAAAAAAACAAATTTTCTGCATAAAAATATCAAATCGCGCTCTGCAAAAAAGAAAAAAATGCAGTGCAAAAAATGCCAAATTAAAAAAAAGCAACGAAAAAAAAATATTTTTTGCACACGACATTCGTGTAGTCCTCTCGGACAATCGGTCGACAGTGTGTGGCTAATGAGA</canonical_amplicon>
		<polymorphic_amplicon>TGAAACTTTCCGAAAATATAAAATATTGCATTTTTTTGTACTAATTTTCACTTTCTTCAAAGATGGGGGCGGAAAAATTCGAAAAATGGAAAAAAGGAAAAAAAAACAAATTTTCTGCATAAAAATATCAAATCGCGCTCTGCAAAAAAGAAAAAAATGCAGTGCAAAAAATGCCAAATTAAAAAAAAGCAACGAAAAAAAAATRTTTTTTGCACACGACATTCGTGTAGTCCTCTCGGACAATCGGTCGACAGTGTGTGGCTAATGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27376</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>68050</contig_pos>
        <strand>+</strand>
        <context>ATTTATTCTG[A/G]AACTGAATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGAGTGATTTCCCAAAATCATATGTGTGGTGAATTCATATTTATTCTG</left_flank>
        <right_flank>AACTGAATTCCACACAATCCACATTTTAAAGGATCATCTGGAGAGTGTGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAAAAATAAGAATTCTGAAACTTTCCGAAAATATAAAATATTGCATTTTTTTGTACTAATTTTCACTTTCTTCAAAGATGGGGGCGGAAAAATTCGAAAAATGGAAAAAAGGAAAAAAAAACAAATTTTCTGCATAAAAATATCAAATCGCGCTCTGCAAAAAAGAAAAAAATGCAGTGCAAAAAATGCCAAATTAAAAAAAAGCAACGAAAAAAAAATATTTTTTGCACACGACATTCGTGTAGTCCTCTCGGACAATCGGTCGACAGTGTGTGGCTAATGAGACGCAGACAGTGGGAGGGATTAGATGGAGAGTGCGGCCAAATTGAAAGAAGACAATTTCGAAAAAATTCATTTATTCACAACCAAATTCAAACAGCACAGCAACAAAAAAATATGCAAAATAAAAATTTCAAAAAATACAAAGAACTCATTTCGGGATCAAATTCGAGTGATTTCCCAAAATCATATGTGTGGTGAATTCATATTTATTCTGAAACTGAATTCCACACAATCCACATTTTAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATATCGTACATGAAGTAGACTTTGAATGTAATTCCACATGTAGTGCAGGACTGAAAATTGGATTTCAGAATTATAGTTTGAGCTCAGTTATCTCGGTTCTTTTGAAAGATGTCAAAATGGGTCACCTTATAAAATGTTTGTGATAACTTGGTAAACATATTGACAGTTGACAACTTGTTGATATTTCGCATAAGAACCGAGATAATTGAGCTCAAAATTGGCTAGACTTCTGTATTGAGCATTTACGGTAGAAGGTCGCCCCACACTACCAACTTTAAGCTTATTTTTTTCGGTTGCTGTCAAAGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAAGTTTATTGTCAATTGACAACGTTTTTATAACTTTCAAAGGAACCGAGATAATTGAGCTCAAAGTACACGTATAGAAGAGGCTTCCTAG</canonical>
            <polymorphic>TTTGAAAAATAAGAATTCTGAAACTTTCCGAAAATATAAAATATTGCATTTTTTTGTACTAATTTTCACTTTCTTCAAAGATGGGGGCGGAAAAATTCGAAAAATGGAAAAAAGGAAAAAAAAACAAATTTTCTGCATAAAAATATCAAATCGCGCTCTGCAAAAAAGAAAAAAATGCAGTGCAAAAAATGCCAAATTAAAAAAAAGCAACGAAAAAAAAATATTTTTTGCACACGACATTCGTGTAGTCCTCTCGGACAATCGGTCGACAGTGTGTGGCTAATGAGACGCAGACAGTGGGAGGGATTAGATGGAGAGTGCGGCCAAATTGAAAGAAGACAATTTCGAAAAAATTCATTTATTCACAACCAAATTCAAACAGCACAGCAACAAAAAAATATGCAAAATAAAAATTTCAAAAAATACAAAGAACTCATTTCGGGATCAAATTCGAGTGATTTCCCAAAATCATATGTGTGGTGAATTCATATTTATTCTGRAACTGAATTCCACACAATCCACATTTTAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATATCGTACATGAAGTAGACTTTGAATGTAATTCCACATGTAGTGCAGGACTGAAAATTGGATTTCAGAATTATAGTTTGAGCTCAGTTATCTCGGTTCTTTTGAAAGATGTCAAAATGGGTCACCTTATAAAATGTTTGTGATAACTTGGTAAACATATTGACAGTTGACAACTTGTTGATATTTCGCATAAGAACCGAGATAATTGAGCTCAAAATTGGCTAGACTTCTGTATTGAGCATTTACGGTAGAAGGTCGCCCCACACTACCAACTTTAAGCTTATTTTTTTCGGTTGCTGTCAAAGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAAGTTTATTGTCAATTGACAACGTTTTTATAACTTTCAAAGGAACCGAGATAATTGAGCTCAAAGTACACGTATAGAAGAGGCTTCCTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>282 242 227 129 91 19 10</canonical_bands>
                <polymorphic_bands>371 282 227 91 19 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTATTCACAACCAAATTCAAAC</pcr_primer_p1>
		<pcr_primer_p2>CCTGCACTACATGTGGAATTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTATTCACAACCAAATTCAAACAGCACAGCAACAAAAAAATATGCAAAATAAAAATTTCAAAAAATACAAAGAACTCATTTCGGGATCAAATTCGAGTGATTTCCCAAAATCATATGTGTGGTGAATTCATATTTATTCTGAAACTGAATTCCACACAATCCACATTTTAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATATCGTACATGAAGTAGACTTTGAATGTAATTCCACATGTAGTGCAGG</canonical_amplicon>
		<polymorphic_amplicon>TTTATTCACAACCAAATTCAAACAGCACAGCAACAAAAAAATATGCAAAATAAAAATTTCAAAAAATACAAAGAACTCATTTCGGGATCAAATTCGAGTGATTTCCCAAAATCATATGTGTGGTGAATTCATATTTATTCTGRAACTGAATTCCACACAATCCACATTTTAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATATCGTACATGAAGTAGACTTTGAATGTAATTCCACATGTAGTGCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27377</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>68061</contig_pos>
        <strand>+</strand>
        <context>AACTGAATTC[C/T]ACACAATCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCCAAAATCATATGTGTGGTGAATTCATATTTATTCTGAAACTGAATTC</left_flank>
        <right_flank>ACACAATCCACATTTTAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAATTCTGAAACTTTCCGAAAATATAAAATATTGCATTTTTTTGTACTAATTTTCACTTTCTTCAAAGATGGGGGCGGAAAAATTCGAAAAATGGAAAAAAGGAAAAAAAAACAAATTTTCTGCATAAAAATATCAAATCGCGCTCTGCAAAAAAGAAAAAAATGCAGTGCAAAAAATGCCAAATTAAAAAAAAGCAACGAAAAAAAAATATTTTTTGCACACGACATTCGTGTAGTCCTCTCGGACAATCGGTCGACAGTGTGTGGCTAATGAGACGCAGACAGTGGGAGGGATTAGATGGAGAGTGCGGCCAAATTGAAAGAAGACAATTTCGAAAAAATTCATTTATTCACAACCAAATTCAAACAGCACAGCAACAAAAAAATATGCAAAATAAAAATTTCAAAAAATACAAAGAACTCATTTCGGGATCAAATTCGAGTGATTTCCCAAAATCATATGTGTGGTGAATTCATATTTATTCTGAAACTGAATTCCACACAATCCACATTTTAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATATCGTACATGAAGTAGACTTTGAATGTAATTCCACATGTAGTGCAGGACTGAAAATTGGATTTCAGAATTATAGTTTGAGCTCAGTTATCTCGGTTCTTTTGAAAGATGTCAAAATGGGTCACCTTATAAAATGTTTGTGATAACTTGGTAAACATATTGACAGTTGACAACTTGTTGATATTTCGCATAAGAACCGAGATAATTGAGCTCAAAATTGGCTAGACTTCTGTATTGAGCATTTACGGTAGAAGGTCGCCCCACACTACCAACTTTAAGCTTATTTTTTTCGGTTGCTGTCAAAGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAAGTTTATTGTCAATTGACAACGTTTTTATAACTTTCAAAGGAACCGAGATAATTGAGCTCAAAGTACACGTATAGAAGAGGCTTCCTAGAGAGGCCCCCA</canonical>
            <polymorphic>AGAATTCTGAAACTTTCCGAAAATATAAAATATTGCATTTTTTTGTACTAATTTTCACTTTCTTCAAAGATGGGGGCGGAAAAATTCGAAAAATGGAAAAAAGGAAAAAAAAACAAATTTTCTGCATAAAAATATCAAATCGCGCTCTGCAAAAAAGAAAAAAATGCAGTGCAAAAAATGCCAAATTAAAAAAAAGCAACGAAAAAAAAATATTTTTTGCACACGACATTCGTGTAGTCCTCTCGGACAATCGGTCGACAGTGTGTGGCTAATGAGACGCAGACAGTGGGAGGGATTAGATGGAGAGTGCGGCCAAATTGAAAGAAGACAATTTCGAAAAAATTCATTTATTCACAACCAAATTCAAACAGCACAGCAACAAAAAAATATGCAAAATAAAAATTTCAAAAAATACAAAGAACTCATTTCGGGATCAAATTCGAGTGATTTCCCAAAATCATATGTGTGGTGAATTCATATTTATTCTGAAACTGAATTCYACACAATCCACATTTTAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATATCGTACATGAAGTAGACTTTGAATGTAATTCCACATGTAGTGCAGGACTGAAAATTGGATTTCAGAATTATAGTTTGAGCTCAGTTATCTCGGTTCTTTTGAAAGATGTCAAAATGGGTCACCTTATAAAATGTTTGTGATAACTTGGTAAACATATTGACAGTTGACAACTTGTTGATATTTCGCATAAGAACCGAGATAATTGAGCTCAAAATTGGCTAGACTTCTGTATTGAGCATTTACGGTAGAAGGTCGCCCCACACTACCAACTTTAAGCTTATTTTTTTCGGTTGCTGTCAAAGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAAGTTTATTGTCAATTGACAACGTTTTTATAACTTTCAAAGGAACCGAGATAATTGAGCTCAAAGTACACGTATAGAAGAGGCTTCCTAGAGAGGCCCCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>154 121 114 79 73 57 50 45 37 32 30 29 26 21 21 20 19 18 11 9 8 7 3 2 2 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>154 121 114 79 73 57 50 45 37 32 32 29 26 21 21 20 19 18 11 9 8 7 3 2 2 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTATTCACAACCAAATTCAAAC</pcr_primer_p1>
		<pcr_primer_p2>CCTGCACTACATGTGGAATTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTATTCACAACCAAATTCAAACAGCACAGCAACAAAAAAATATGCAAAATAAAAATTTCAAAAAATACAAAGAACTCATTTCGGGATCAAATTCGAGTGATTTCCCAAAATCATATGTGTGGTGAATTCATATTTATTCTGAAACTGAATTCCACACAATCCACATTTTAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATATCGTACATGAAGTAGACTTTGAATGTAATTCCACATGTAGTGCAGG</canonical_amplicon>
		<polymorphic_amplicon>TTTATTCACAACCAAATTCAAACAGCACAGCAACAAAAAAATATGCAAAATAAAAATTTCAAAAAATACAAAGAACTCATTTCGGGATCAAATTCGAGTGATTTCCCAAAATCATATGTGTGGTGAATTCATATTTATTCTGAAACTGAATTCYACACAATCCACATTTTAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATATCGTACATGAAGTAGACTTTGAATGTAATTCCACATGTAGTGCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27378</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>68114</contig_pos>
        <strand></strand>
        <context>CGCGTGGATA[T/C]YGTACATGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACAATCCACATTTTAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATA</left_flank>
        <right_flank>CGTACATGAAGTAGACTTTGAATGTAATTCCACATGTAGTGCAGGACTGA</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCACTTTCTTCAAAGATGGGGGCGGAAAAATTCGAAAAATGGAAAAAAGGAAAAAAAAACAAATTTTCTGCATAAAAATATCAAATCGCGCTCTGCAAAAAAGAAAAAAATGCAGTGCAAAAAATGCCAAATTAAAAAAAAGCAACGAAAAAAAAATATTTTTTGCACACGACATTCGTGTAGTCCTCTCGGACAATCGGTCGACAGTGTGTGGCTAATGAGACGCAGACAGTGGGAGGGATTAGATGGAGAGTGCGGCCAAATTGAAAGAAGACAATTTCGAAAAAATTCATTTATTCACAACCAAATTCAAACAGCACAGCAACAAAAAAATATGCAAAATAAAAATTTCAAAAAATACAAAGAACTCATTTCGGGATCAAATTCGAGTGATTTCCCAAAATCATATGTGTGGTGAATTCATATTTATTCTGAAACTGAATTCCACACAATCCACATTTTAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATATCGTACATGAAGTAGACTTTGAATGTAATTCCACATGTAGTGCAGGACTGAAAATTGGATTTCAGAATTATAGTTTGAGCTCAGTTATCTCGGTTCTTTTGAAAGATGTCAAAATGGGTCACCTTATAAAATGTTTGTGATAACTTGGTAAACATATTGACAGTTGACAACTTGTTGATATTTCGCATAAGAACCGAGATAATTGAGCTCAAAATTGGCTAGACTTCTGTATTGAGCATTTACGGTAGAAGGTCGCCCCACACTACCAACTTTAAGCTTATTTTTTTCGGTTGCTGTCAAAGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAAGTTTATTGTCAATTGACAACGTTTTTATAACTTTCAAAGGAACCGAGATAATTGAGCTCAAAGTACACGTATAGAAGAGGCTTCCTAGAGAGGCCCCCAAGCTGTGAAGTTTGAGCTCAATTACCGTAAAACCTCTAATAGAACGACACCCC</canonical>
            <polymorphic>TTCACTTTCTTCAAAGATGGGGGCGGAAAAATTCGAAAAATGGAAAAAAGGAAAAAAAAACAAATTTTCTGCATAAAAATATCAAATCGCGCTCTGCAAAAAAGAAAAAAATGCAGTGCAAAAAATGCCAAATTAAAAAAAAGCAACGAAAAAAAAATATTTTTTGCACACGACATTCGTGTAGTCCTCTCGGACAATCGGTCGACAGTGTGTGGCTAATGAGACGCAGACAGTGGGAGGGATTAGATGGAGAGTGCGGCCAAATTGAAAGAAGACAATTTCGAAAAAATTCATTTATTCACAACCAAATTCAAACAGCACAGCAACAAAAAAATATGCAAAATAAAAATTTCAAAAAATACAAAGAACTCATTTCGGGATCAAATTCGAGTGATTTCCCAAAATCATATGTGTGGTGAATTCATATTTATTCTGAAACTGAATTCCACACAATCCACATTTTAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATAYCGTACATGAAGTAGACTTTGAATGTAATTCCACATGTAGTGCAGGACTGAAAATTGGATTTCAGAATTATAGTTTGAGCTCAGTTATCTCGGTTCTTTTGAAAGATGTCAAAATGGGTCACCTTATAAAATGTTTGTGATAACTTGGTAAACATATTGACAGTTGACAACTTGTTGATATTTCGCATAAGAACCGAGATAATTGAGCTCAAAATTGGCTAGACTTCTGTATTGAGCATTTACGGTAGAAGGTCGCCCCACACTACCAACTTTAAGCTTATTTTTTTCGGTTGCTGTCAAAGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAAGTTTATTGTCAATTGACAACGTTTTTATAACTTTCAAAGGAACCGAGATAATTGAGCTCAAAGTACACGTATAGAAGAGGCTTCCTAGAGAGGCCCCCAAGCTGTGAAGTTTGAGCTCAATTACCGTAAAACCTCTAATAGAACGACACCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAAATTCAAACAGCACAG</pcr_primer_p1>
		<pcr_primer_p2>AATTTTCAGTCCTGCACTACAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACCAAATTCAAACAGCACAGCAACAAAAAAATATGCAAAATAAAAATTTCAAAAAATACAAAGAACTCATTTCGGGATCAAATTCGAGTGATTTCCCAAAATCATATGTGTGGTGAATTCATATTTATTCTGAAACTGAATTCCACACAATCCACATTTTAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATATCGTACATGAAGTAGACTTTGAATGTAATTCCACATGTAGTGCAGGACTGAAAATT</canonical_amplicon>
		<polymorphic_amplicon>ACCAAATTCAAACAGCACAGCAACAAAAAAATATGCAAAATAAAAATTTCAAAAAATACAAAGAACTCATTTCGGGATCAAATTCGAGTGATTTCCCAAAATCATATGTGTGGTGAATTCATATTTATTCTGAAACTGAATTCCACACAATCCACATTTTAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATAYCGTACATGAAGTAGACTTTGAATGTAATTCCACATGTAGTGCAGGACTGAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27379</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>68115</contig_pos>
        <strand>+</strand>
        <context>GCGTGGATAY[C/T]GTACATGAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATCCACATTTTAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATAT</left_flank>
        <right_flank>GTACATGAAGTAGACTTTGAATGTAATTCCACATGTAGTGCAGGACTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACTTTCTTCAAAGATGGGGGCGGAAAAATTCGAAAAATGGAAAAAAGGAAAAAAAAACAAATTTTCTGCATAAAAATATCAAATCGCGCTCTGCAAAAAAGAAAAAAATGCAGTGCAAAAAATGCCAAATTAAAAAAAAGCAACGAAAAAAAAATATTTTTTGCACACGACATTCGTGTAGTCCTCTCGGACAATCGGTCGACAGTGTGTGGCTAATGAGACGCAGACAGTGGGAGGGATTAGATGGAGAGTGCGGCCAAATTGAAAGAAGACAATTTCGAAAAAATTCATTTATTCACAACCAAATTCAAACAGCACAGCAACAAAAAAATATGCAAAATAAAAATTTCAAAAAATACAAAGAACTCATTTCGGGATCAAATTCGAGTGATTTCCCAAAATCATATGTGTGGTGAATTCATATTTATTCTGAAACTGAATTCCACACAATCCACATTTTAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATATCGTACATGAAGTAGACTTTGAATGTAATTCCACATGTAGTGCAGGACTGAAAATTGGATTTCAGAATTATAGTTTGAGCTCAGTTATCTCGGTTCTTTTGAAAGATGTCAAAATGGGTCACCTTATAAAATGTTTGTGATAACTTGGTAAACATATTGACAGTTGACAACTTGTTGATATTTCGCATAAGAACCGAGATAATTGAGCTCAAAATTGGCTAGACTTCTGTATTGAGCATTTACGGTAGAAGGTCGCCCCACACTACCAACTTTAAGCTTATTTTTTTCGGTTGCTGTCAAAGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAAGTTTATTGTCAATTGACAACGTTTTTATAACTTTCAAAGGAACCGAGATAATTGAGCTCAAAGTACACGTATAGAAGAGGCTTCCTAGAGAGGCCCCCAAGCTGTGAAGTTTGAGCTCAATTACCGTAAAACCTCTAATAGAACGACACCCCG</canonical>
            <polymorphic>TCACTTTCTTCAAAGATGGGGGCGGAAAAATTCGAAAAATGGAAAAAAGGAAAAAAAAACAAATTTTCTGCATAAAAATATCAAATCGCGCTCTGCAAAAAAGAAAAAAATGCAGTGCAAAAAATGCCAAATTAAAAAAAAGCAACGAAAAAAAAATATTTTTTGCACACGACATTCGTGTAGTCCTCTCGGACAATCGGTCGACAGTGTGTGGCTAATGAGACGCAGACAGTGGGAGGGATTAGATGGAGAGTGCGGCCAAATTGAAAGAAGACAATTTCGAAAAAATTCATTTATTCACAACCAAATTCAAACAGCACAGCAACAAAAAAATATGCAAAATAAAAATTTCAAAAAATACAAAGAACTCATTTCGGGATCAAATTCGAGTGATTTCCCAAAATCATATGTGTGGTGAATTCATATTTATTCTGAAACTGAATTCCACACAATCCACATTTTAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATATYGTACATGAAGTAGACTTTGAATGTAATTCCACATGTAGTGCAGGACTGAAAATTGGATTTCAGAATTATAGTTTGAGCTCAGTTATCTCGGTTCTTTTGAAAGATGTCAAAATGGGTCACCTTATAAAATGTTTGTGATAACTTGGTAAACATATTGACAGTTGACAACTTGTTGATATTTCGCATAAGAACCGAGATAATTGAGCTCAAAATTGGCTAGACTTCTGTATTGAGCATTTACGGTAGAAGGTCGCCCCACACTACCAACTTTAAGCTTATTTTTTTCGGTTGCTGTCAAAGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAAGTTTATTGTCAATTGACAACGTTTTTATAACTTTCAAAGGAACCGAGATAATTGAGCTCAAAGTACACGTATAGAAGAGGCTTCCTAGAGAGGCCCCCAAGCTGTGAAGTTTGAGCTCAATTACCGTAAAACCTCTAATAGAACGACACCCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAAATTCAAACAGCACAG</pcr_primer_p1>
		<pcr_primer_p2>AATTTTCAGTCCTGCACTACAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACCAAATTCAAACAGCACAGCAACAAAAAAATATGCAAAATAAAAATTTCAAAAAATACAAAGAACTCATTTCGGGATCAAATTCGAGTGATTTCCCAAAATCATATGTGTGGTGAATTCATATTTATTCTGAAACTGAATTCCACACAATCCACATTTTAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATATCGTACATGAAGTAGACTTTGAATGTAATTCCACATGTAGTGCAGGACTGAAAATT</canonical_amplicon>
		<polymorphic_amplicon>ACCAAATTCAAACAGCACAGCAACAAAAAAATATGCAAAATAAAAATTTCAAAAAATACAAAGAACTCATTTCGGGATCAAATTCGAGTGATTTCCCAAAATCATATGTGTGGTGAATTCATATTTATTCTGAAACTGAATTCCACACAATCCACATTTTAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATATYGTACATGAAGTAGACTTTGAATGTAATTCCACATGTAGTGCAGGACTGAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27380</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>68129</contig_pos>
        <strand></strand>
        <context>CATGAAGTAG[A/T]WTTTGAATGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATATCGTACATGAAGTAG</left_flank>
        <right_flank>CTTTGAATGTAATTCCACATGTAGTGCAGGACTGAAAATTGGATTTCAGA</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGGGGGCGGAAAAATTCGAAAAATGGAAAAAAGGAAAAAAAAACAAATTTTCTGCATAAAAATATCAAATCGCGCTCTGCAAAAAAGAAAAAAATGCAGTGCAAAAAATGCCAAATTAAAAAAAAGCAACGAAAAAAAAATATTTTTTGCACACGACATTCGTGTAGTCCTCTCGGACAATCGGTCGACAGTGTGTGGCTAATGAGACGCAGACAGTGGGAGGGATTAGATGGAGAGTGCGGCCAAATTGAAAGAAGACAATTTCGAAAAAATTCATTTATTCACAACCAAATTCAAACAGCACAGCAACAAAAAAATATGCAAAATAAAAATTTCAAAAAATACAAAGAACTCATTTCGGGATCAAATTCGAGTGATTTCCCAAAATCATATGTGTGGTGAATTCATATTTATTCTGAAACTGAATTCCACACAATCCACATTTTAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATATCGTACATGAAGTAGACTTTGAATGTAATTCCACATGTAGTGCAGGACTGAAAATTGGATTTCAGAATTATAGTTTGAGCTCAGTTATCTCGGTTCTTTTGAAAGATGTCAAAATGGGTCACCTTATAAAATGTTTGTGATAACTTGGTAAACATATTGACAGTTGACAACTTGTTGATATTTCGCATAAGAACCGAGATAATTGAGCTCAAAATTGGCTAGACTTCTGTATTGAGCATTTACGGTAGAAGGTCGCCCCACACTACCAACTTTAAGCTTATTTTTTTCGGTTGCTGTCAAAGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAAGTTTATTGTCAATTGACAACGTTTTTATAACTTTCAAAGGAACCGAGATAATTGAGCTCAAAGTACACGTATAGAAGAGGCTTCCTAGAGAGGCCCCCAAGCTGTGAAGTTTGAGCTCAATTACCGTAAAACCTCTAATAGAACGACACCCCGATCGTCCACTTTGA</canonical>
            <polymorphic>GATGGGGGCGGAAAAATTCGAAAAATGGAAAAAAGGAAAAAAAAACAAATTTTCTGCATAAAAATATCAAATCGCGCTCTGCAAAAAAGAAAAAAATGCAGTGCAAAAAATGCCAAATTAAAAAAAAGCAACGAAAAAAAAATATTTTTTGCACACGACATTCGTGTAGTCCTCTCGGACAATCGGTCGACAGTGTGTGGCTAATGAGACGCAGACAGTGGGAGGGATTAGATGGAGAGTGCGGCCAAATTGAAAGAAGACAATTTCGAAAAAATTCATTTATTCACAACCAAATTCAAACAGCACAGCAACAAAAAAATATGCAAAATAAAAATTTCAAAAAATACAAAGAACTCATTTCGGGATCAAATTCGAGTGATTTCCCAAAATCATATGTGTGGTGAATTCATATTTATTCTGAAACTGAATTCCACACAATCCACATTTTAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATATCGTACATGAAGTAGWCTTTGAATGTAATTCCACATGTAGTGCAGGACTGAAAATTGGATTTCAGAATTATAGTTTGAGCTCAGTTATCTCGGTTCTTTTGAAAGATGTCAAAATGGGTCACCTTATAAAATGTTTGTGATAACTTGGTAAACATATTGACAGTTGACAACTTGTTGATATTTCGCATAAGAACCGAGATAATTGAGCTCAAAATTGGCTAGACTTCTGTATTGAGCATTTACGGTAGAAGGTCGCCCCACACTACCAACTTTAAGCTTATTTTTTTCGGTTGCTGTCAAAGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAAGTTTATTGTCAATTGACAACGTTTTTATAACTTTCAAAGGAACCGAGATAATTGAGCTCAAAGTACACGTATAGAAGAGGCTTCCTAGAGAGGCCCCCAAGCTGTGAAGTTTGAGCTCAATTACCGTAAAACCTCTAATAGAACGACACCCCGATCGTCCACTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 310 187</canonical_bands>
                <polymorphic_bands>813 187</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>310 188 153 136 96 94 15 8</canonical_bands>
                <polymorphic_bands>446 188 153 96 94 15 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAGGATCATCTGGAGAGTGT</pcr_primer_p1>
		<pcr_primer_p2>CGTAAATGCTCAATACAGAAGTC</pcr_primer_p2>
		<pcr_amplicon_size>281</pcr_amplicon_size>
		<canonical_amplicon>TAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATATCGTACATGAAGTAGACTTTGAATGTAATTCCACATGTAGTGCAGGACTGAAAATTGGATTTCAGAATTATAGTTTGAGCTCAGTTATCTCGGTTCTTTTGAAAGATGTCAAAATGGGTCACCTTATAAAATGTTTGTGATAACTTGGTAAACATATTGACAGTTGACAACTTGTTGATATTTCGCATAAGAACCGAGATAATTGAGCTCAAAATTGGCTAGACTTCTGTATTGAGCATTTACG</canonical_amplicon>
		<polymorphic_amplicon>TAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATATCGTACATGAAGTAGWCTTTGAATGTAATTCCACATGTAGTGCAGGACTGAAAATTGGATTTCAGAATTATAGTTTGAGCTCAGTTATCTCGGTTCTTTTGAAAGATGTCAAAATGGGTCACCTTATAAAATGTTTGTGATAACTTGGTAAACATATTGACAGTTGACAACTTGTTGATATTTCGCATAAGAACCGAGATAATTGAGCTCAAAATTGGCTAGACTTCTGTATTGAGCATTTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27381</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>68130</contig_pos>
        <strand>+</strand>
        <context>ATGAAGTAGW[A/T]TTTGAATGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGGATCATCTGGAGAGTGTGTGTTCGCGTGGATATCGTACATGAAGTAGA</left_flank>
        <right_flank>TTTGAATGTAATTCCACATGTAGTGCAGGACTGAAAATTGGATTTCAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGGGGCGGAAAAATTCGAAAAATGGAAAAAAGGAAAAAAAAACAAATTTTCTGCATAAAAATATCAAATCGCGCTCTGCAAAAAAGAAAAAAATGCAGTGCAAAAAATGCCAAATTAAAAAAAAGCAACGAAAAAAAAATATTTTTTGCACACGACATTCGTGTAGTCCTCTCGGACAATCGGTCGACAGTGTGTGGCTAATGAGACGCAGACAGTGGGAGGGATTAGATGGAGAGTGCGGCCAAATTGAAAGAAGACAATTTCGAAAAAATTCATTTATTCACAACCAAATTCAAACAGCACAGCAACAAAAAAATATGCAAAATAAAAATTTCAAAAAATACAAAGAACTCATTTCGGGATCAAATTCGAGTGATTTCCCAAAATCATATGTGTGGTGAATTCATATTTATTCTGAAACTGAATTCCACACAATCCACATTTTAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATATCGTACATGAAGTAGACTTTGAATGTAATTCCACATGTAGTGCAGGACTGAAAATTGGATTTCAGAATTATAGTTTGAGCTCAGTTATCTCGGTTCTTTTGAAAGATGTCAAAATGGGTCACCTTATAAAATGTTTGTGATAACTTGGTAAACATATTGACAGTTGACAACTTGTTGATATTTCGCATAAGAACCGAGATAATTGAGCTCAAAATTGGCTAGACTTCTGTATTGAGCATTTACGGTAGAAGGTCGCCCCACACTACCAACTTTAAGCTTATTTTTTTCGGTTGCTGTCAAAGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAAGTTTATTGTCAATTGACAACGTTTTTATAACTTTCAAAGGAACCGAGATAATTGAGCTCAAAGTACACGTATAGAAGAGGCTTCCTAGAGAGGCCCCCAAGCTGTGAAGTTTGAGCTCAATTACCGTAAAACCTCTAATAGAACGACACCCCGATCGTCCACTTTGAG</canonical>
            <polymorphic>ATGGGGGCGGAAAAATTCGAAAAATGGAAAAAAGGAAAAAAAAACAAATTTTCTGCATAAAAATATCAAATCGCGCTCTGCAAAAAAGAAAAAAATGCAGTGCAAAAAATGCCAAATTAAAAAAAAGCAACGAAAAAAAAATATTTTTTGCACACGACATTCGTGTAGTCCTCTCGGACAATCGGTCGACAGTGTGTGGCTAATGAGACGCAGACAGTGGGAGGGATTAGATGGAGAGTGCGGCCAAATTGAAAGAAGACAATTTCGAAAAAATTCATTTATTCACAACCAAATTCAAACAGCACAGCAACAAAAAAATATGCAAAATAAAAATTTCAAAAAATACAAAGAACTCATTTCGGGATCAAATTCGAGTGATTTCCCAAAATCATATGTGTGGTGAATTCATATTTATTCTGAAACTGAATTCCACACAATCCACATTTTAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATATCGTACATGAAGTAGAWTTTGAATGTAATTCCACATGTAGTGCAGGACTGAAAATTGGATTTCAGAATTATAGTTTGAGCTCAGTTATCTCGGTTCTTTTGAAAGATGTCAAAATGGGTCACCTTATAAAATGTTTGTGATAACTTGGTAAACATATTGACAGTTGACAACTTGTTGATATTTCGCATAAGAACCGAGATAATTGAGCTCAAAATTGGCTAGACTTCTGTATTGAGCATTTACGGTAGAAGGTCGCCCCACACTACCAACTTTAAGCTTATTTTTTTCGGTTGCTGTCAAAGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAAGTTTATTGTCAATTGACAACGTTTTTATAACTTTCAAAGGAACCGAGATAATTGAGCTCAAAGTACACGTATAGAAGAGGCTTCCTAGAGAGGCCCCCAAGCTGTGAAGTTTGAGCTCAATTACCGTAAAACCTCTAATAGAACGACACCCCGATCGTCCACTTTGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>504 310 186</canonical_bands>
                <polymorphic_bands>814 186</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>310 187 153 136 96 94 15 9</canonical_bands>
                <polymorphic_bands>446 187 153 96 94 15 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAGGATCATCTGGAGAGTGT</pcr_primer_p1>
		<pcr_primer_p2>CGTAAATGCTCAATACAGAAGTC</pcr_primer_p2>
		<pcr_amplicon_size>281</pcr_amplicon_size>
		<canonical_amplicon>TAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATATCGTACATGAAGTAGACTTTGAATGTAATTCCACATGTAGTGCAGGACTGAAAATTGGATTTCAGAATTATAGTTTGAGCTCAGTTATCTCGGTTCTTTTGAAAGATGTCAAAATGGGTCACCTTATAAAATGTTTGTGATAACTTGGTAAACATATTGACAGTTGACAACTTGTTGATATTTCGCATAAGAACCGAGATAATTGAGCTCAAAATTGGCTAGACTTCTGTATTGAGCATTTACG</canonical_amplicon>
		<polymorphic_amplicon>TAAAGGATCATCTGGAGAGTGTGTGTTCGCGTGGATATCGTACATGAAGTAGAWTTTGAATGTAATTCCACATGTAGTGCAGGACTGAAAATTGGATTTCAGAATTATAGTTTGAGCTCAGTTATCTCGGTTCTTTTGAAAGATGTCAAAATGGGTCACCTTATAAAATGTTTGTGATAACTTGGTAAACATATTGACAGTTGACAACTTGTTGATATTTCGCATAAGAACCGAGATAATTGAGCTCAAAATTGGCTAGACTTCTGTATTGAGCATTTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27382</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>73787</contig_pos>
        <strand></strand>
        <context>AATactgtag[A/G]rcatgtaata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAATGAGTTGGCAGAATCCATGGCACCTGAAAATTTAGAAATACTGTAG</left_flank>
        <right_flank>GCATGTAATAGAAGGGCCCACACTTTGATATCAATTATCTCGACTCCTAT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAACCGAGATATTTGAGCTTAAAGAACACGTTTCCCATTTTCTCAACAAATCAAAACTCACTACAACTGGGCATTCCTTTGCTCAGACACTTTTGATATCGACAGTATTCACAATATAGTTTCACATAATAGTTTCTGGTCAAAATTGTGATATTACAGTTCTGGTAAAACCTGCATCGGAATTCGTTATCCGATCCCACGCTTCGATAGAATCCCTAAAATTTTGAATATTTGAACTAAAATTTTGATTTTTTGAAAGTGAAATTTTGAACCGAAATTTCAAAACCTCTGAAATTTTGAAAACTTTTGGGGCGTAAAAAATTTGAATCAAAGCCTACCCTACAGCTTTCACATGTCATCACTCCCTTGCATCGCATGAATCCGTTGTCTCCACAGATTTTGCAAATTTTCTTCTTTTCATTTTCATTTTCTTTGGGAAGTTCTGGTTCTAATGAGTTGGCAGAATCCATGGCACCTGAAAATTTAGAAATACTGTAGAGCATGTAATAGAAGGGCCCACACTTTGATATCAATTATCTCGACTCCTATGTAAGGTATCGAAAAAGTTCAACTGATAAAATTATTCCGATATTATGATAAAGAATTATCAGTTGATAACTTTTTGATATCTTTGACAGGAAACGAGAAAAATTAGCTCAAATTTAGGGGCCCTTCTATTACAGGTATTACGGTAGTTGACTAGAAAAGAGAAAGAGAGAAAGAGAGAGAGAAAAAATATATAAAATACGAAAAAAAAAGGAGACGACTCTGTATTGTCGAATTAAAAAAAAAGTGGGACCTGAAAATTTGAAAATCTTAGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAAACGTAATATTTCAGATTTTCGCCTCGTTCGAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTTTAGAGATGCTAGCGATCATTTTCATACCAAGAAATCTAAATTTTGTCCAGAAAATCCCACTGGATTCACA</canonical>
            <polymorphic>GGAACCGAGATATTTGAGCTTAAAGAACACGTTTCCCATTTTCTCAACAAATCAAAACTCACTACAACTGGGCATTCCTTTGCTCAGACACTTTTGATATCGACAGTATTCACAATATAGTTTCACATAATAGTTTCTGGTCAAAATTGTGATATTACAGTTCTGGTAAAACCTGCATCGGAATTCGTTATCCGATCCCACGCTTCGATAGAATCCCTAAAATTTTGAATATTTGAACTAAAATTTTGATTTTTTGAAAGTGAAATTTTGAACCGAAATTTCAAAACCTCTGAAATTTTGAAAACTTTTGGGGCGTAAAAAATTTGAATCAAAGCCTACCCTACAGCTTTCACATGTCATCACTCCCTTGCATCGCATGAATCCGTTGTCTCCACAGATTTTGCAAATTTTCTTCTTTTCATTTTCATTTTCTTTGGGAAGTTCTGGTTCTAATGAGTTGGCAGAATCCATGGCACCTGAAAATTTAGAAATACTGTAGRGCATGTAATAGAAGGGCCCACACTTTGATATCAATTATCTCGACTCCTATGTAAGGTATCGAAAAAGTTCAACTGATAAAATTATTCCGATATTATGATAAAGAATTATCAGTTGATAACTTTTTGATATCTTTGACAGGAAACGAGAAAAATTAGCTCAAATTTAGGGGCCCTTCTATTACAGGTATTACGGTAGTTGACTAGAAAAGAGAAAGAGAGAAAGAGAGAGAGAAAAAATATATAAAATACGAAAAAAAAAGGAGACGACTCTGTATTGTCGAATTAAAAAAAAAGTGGGACCTGAAAATTTGAAAATCTTAGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAAACGTAATATTTCAGATTTTCGCCTCGTTCGAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTTTAGAGATGCTAGCGATCATTTTCATACCAAGAAATCTAAATTTTGTCCAGAAAATCCCACTGGATTCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCTAATGAGTTGGCAGAATC</pcr_primer_p1>
		<pcr_primer_p2>CATAATTCAGCAACGAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>704</pcr_amplicon_size>
		<canonical_amplicon>GTTCTAATGAGTTGGCAGAATCCATGGCACCTGAAAATTTAGAAATACTGTAGAGCATGTAATAGAAGGGCCCAC</canonical_amplicon>
		<polymorphic_amplicon>GTTCTAATGAGTTGGCAGAATCCATGGCACCTGAAAATTTAGAAATACTGTAGRGCATGTAATAGAAGGGCCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27383</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>73788</contig_pos>
        <strand></strand>
        <context>ATactgtagr[G/A]catgtaatag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAATGAGTTGGCAGAATCCATGGCACCTGAAAATTTAGAAATACTGTAGA</left_flank>
        <right_flank>CATGTAATAGAAGGGCCCACACTTTGATATCAATTATCTCGACTCCTATG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACCGAGATATTTGAGCTTAAAGAACACGTTTCCCATTTTCTCAACAAATCAAAACTCACTACAACTGGGCATTCCTTTGCTCAGACACTTTTGATATCGACAGTATTCACAATATAGTTTCACATAATAGTTTCTGGTCAAAATTGTGATATTACAGTTCTGGTAAAACCTGCATCGGAATTCGTTATCCGATCCCACGCTTCGATAGAATCCCTAAAATTTTGAATATTTGAACTAAAATTTTGATTTTTTGAAAGTGAAATTTTGAACCGAAATTTCAAAACCTCTGAAATTTTGAAAACTTTTGGGGCGTAAAAAATTTGAATCAAAGCCTACCCTACAGCTTTCACATGTCATCACTCCCTTGCATCGCATGAATCCGTTGTCTCCACAGATTTTGCAAATTTTCTTCTTTTCATTTTCATTTTCTTTGGGAAGTTCTGGTTCTAATGAGTTGGCAGAATCCATGGCACCTGAAAATTTAGAAATACTGTAGAGCATGTAATAGAAGGGCCCACACTTTGATATCAATTATCTCGACTCCTATGTAAGGTATCGAAAAAGTTCAACTGATAAAATTATTCCGATATTATGATAAAGAATTATCAGTTGATAACTTTTTGATATCTTTGACAGGAAACGAGAAAAATTAGCTCAAATTTAGGGGCCCTTCTATTACAGGTATTACGGTAGTTGACTAGAAAAGAGAAAGAGAGAAAGAGAGAGAGAAAAAATATATAAAATACGAAAAAAAAAGGAGACGACTCTGTATTGTCGAATTAAAAAAAAAGTGGGACCTGAAAATTTGAAAATCTTAGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAAACGTAATATTTCAGATTTTCGCCTCGTTCGAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTTTAGAGATGCTAGCGATCATTTTCATACCAAGAAATCTAAATTTTGTCCAGAAAATCCCACTGGATTCACAG</canonical>
            <polymorphic>GAACCGAGATATTTGAGCTTAAAGAACACGTTTCCCATTTTCTCAACAAATCAAAACTCACTACAACTGGGCATTCCTTTGCTCAGACACTTTTGATATCGACAGTATTCACAATATAGTTTCACATAATAGTTTCTGGTCAAAATTGTGATATTACAGTTCTGGTAAAACCTGCATCGGAATTCGTTATCCGATCCCACGCTTCGATAGAATCCCTAAAATTTTGAATATTTGAACTAAAATTTTGATTTTTTGAAAGTGAAATTTTGAACCGAAATTTCAAAACCTCTGAAATTTTGAAAACTTTTGGGGCGTAAAAAATTTGAATCAAAGCCTACCCTACAGCTTTCACATGTCATCACTCCCTTGCATCGCATGAATCCGTTGTCTCCACAGATTTTGCAAATTTTCTTCTTTTCATTTTCATTTTCTTTGGGAAGTTCTGGTTCTAATGAGTTGGCAGAATCCATGGCACCTGAAAATTTAGAAATACTGTAGARCATGTAATAGAAGGGCCCACACTTTGATATCAATTATCTCGACTCCTATGTAAGGTATCGAAAAAGTTCAACTGATAAAATTATTCCGATATTATGATAAAGAATTATCAGTTGATAACTTTTTGATATCTTTGACAGGAAACGAGAAAAATTAGCTCAAATTTAGGGGCCCTTCTATTACAGGTATTACGGTAGTTGACTAGAAAAGAGAAAGAGAGAAAGAGAGAGAGAAAAAATATATAAAATACGAAAAAAAAAGGAGACGACTCTGTATTGTCGAATTAAAAAAAAAGTGGGACCTGAAAATTTGAAAATCTTAGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAAACGTAATATTTCAGATTTTCGCCTCGTTCGAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTTTAGAGATGCTAGCGATCATTTTCATACCAAGAAATCTAAATTTTGTCCAGAAAATCCCACTGGATTCACAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>496 355 149</canonical_bands>
                <polymorphic_bands>645 355</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCTAATGAGTTGGCAGAATC</pcr_primer_p1>
		<pcr_primer_p2>CATAATTCAGCAACGAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>704</pcr_amplicon_size>
		<canonical_amplicon>GTTCTAATGAGTTGGCAGAATCCATGGCACCTGAAAATTTAGAAATACTGTAGAGCATGTAATAGAAGGGCCCACA</canonical_amplicon>
		<polymorphic_amplicon>GTTCTAATGAGTTGGCAGAATCCATGGCACCTGAAAATTTAGAAATACTGTAGARCATGTAATAGAAGGGCCCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27384</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>73849</contig_pos>
        <strand></strand>
        <context>taaggtatcg[A/C]aaaagttcaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGGGCCCACACTTTGATATCAATTATCTCGACTCCTATGTAAGGTATCG</left_flank>
        <right_flank>AAAAGTTCAACTGATAAAATTATTCCGATATTATGATAAAGAATTATCAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACAACTGGGCATTCCTTTGCTCAGACACTTTTGATATCGACAGTATTCACAATATAGTTTCACATAATAGTTTCTGGTCAAAATTGTGATATTACAGTTCTGGTAAAACCTGCATCGGAATTCGTTATCCGATCCCACGCTTCGATAGAATCCCTAAAATTTTGAATATTTGAACTAAAATTTTGATTTTTTGAAAGTGAAATTTTGAACCGAAATTTCAAAACCTCTGAAATTTTGAAAACTTTTGGGGCGTAAAAAATTTGAATCAAAGCCTACCCTACAGCTTTCACATGTCATCACTCCCTTGCATCGCATGAATCCGTTGTCTCCACAGATTTTGCAAATTTTCTTCTTTTCATTTTCATTTTCTTTGGGAAGTTCTGGTTCTAATGAGTTGGCAGAATCCATGGCACCTGAAAATTTAGAAATACTGTAGAGCATGTAATAGAAGGGCCCACACTTTGATATCAATTATCTCGACTCCTATGTAAGGTATCGAAAAAGTTCAACTGATAAAATTATTCCGATATTATGATAAAGAATTATCAGTTGATAACTTTTTGATATCTTTGACAGGAAACGAGAAAAATTAGCTCAAATTTAGGGGCCCTTCTATTACAGGTATTACGGTAGTTGACTAGAAAAGAGAAAGAGAGAAAGAGAGAGAGAAAAAATATATAAAATACGAAAAAAAAAGGAGACGACTCTGTATTGTCGAATTAAAAAAAAAGTGGGACCTGAAAATTTGAAAATCTTAGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAAACGTAATATTTCAGATTTTCGCCTCGTTCGAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTTTAGAGATGCTAGCGATCATTTTCATACCAAGAAATCTAAATTTTGTCCAGAAAATCCCACTGGATTCACAGAAATAAGTTTGGTTTACTACGGTAGTGATTTTGAGGCAAGGCCTAGAAAATTGACTTTGAA</canonical>
            <polymorphic>TACAACTGGGCATTCCTTTGCTCAGACACTTTTGATATCGACAGTATTCACAATATAGTTTCACATAATAGTTTCTGGTCAAAATTGTGATATTACAGTTCTGGTAAAACCTGCATCGGAATTCGTTATCCGATCCCACGCTTCGATAGAATCCCTAAAATTTTGAATATTTGAACTAAAATTTTGATTTTTTGAAAGTGAAATTTTGAACCGAAATTTCAAAACCTCTGAAATTTTGAAAACTTTTGGGGCGTAAAAAATTTGAATCAAAGCCTACCCTACAGCTTTCACATGTCATCACTCCCTTGCATCGCATGAATCCGTTGTCTCCACAGATTTTGCAAATTTTCTTCTTTTCATTTTCATTTTCTTTGGGAAGTTCTGGTTCTAATGAGTTGGCAGAATCCATGGCACCTGAAAATTTAGAAATACTGTAGAGCATGTAATAGAAGGGCCCACACTTTGATATCAATTATCTCGACTCCTATGTAAGGTATCGMAAAAGTTCAACTGATAAAATTATTCCGATATTATGATAAAGAATTATCAGTTGATAACTTTTTGATATCTTTGACAGGAAACGAGAAAAATTAGCTCAAATTTAGGGGCCCTTCTATTACAGGTATTACGGTAGTTGACTAGAAAAGAGAAAGAGAGAAAGAGAGAGAGAAAAAATATATAAAATACGAAAAAAAAAGGAGACGACTCTGTATTGTCGAATTAAAAAAAAAGTGGGACCTGAAAATTTGAAAATCTTAGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAAACGTAATATTTCAGATTTTCGCCTCGTTCGAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTTTAGAGATGCTAGCGATCATTTTCATACCAAGAAATCTAAATTTTGTCCAGAAAATCCCACTGGATTCACAGAAATAAGTTTGGTTTACTACGGTAGTGATTTTGAGGCAAGGCCTAGAAAATTGACTTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>335 219 148 105 104 39 31 19</canonical_bands>
                <polymorphic_bands>335 238 148 105 104 39 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGCACCTGAAAATTTAGAA</pcr_primer_p1>
		<pcr_primer_p2>CATAATTCAGCAACGAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>680</pcr_amplicon_size>
		<canonical_amplicon>TGGCACCTGAAAATTTAGAAATACTGTAGAGCATGTAATAGAAGGGCCCACACTTTGATATCAATTATCTCGACTCCTATGTAAGGTATCGAAAAAGTTCAACTGATAAAATT</canonical_amplicon>
		<polymorphic_amplicon>TGGCACCTGAAAATTTAGAAATACTGTAGAGCATGTAATAGAAGGGCCCACACTTTGATATCAATTATCTCGACTCCTATGTAAGGTATCGMAAAAGTTCAACTGATAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27385</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>73949</contig_pos>
        <strand></strand>
        <context>attagctcaa[A/T]tttaggggcc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTGATAACTTTTTGATATCTTTGACAGGAAACGAGAAAAATTAGCTCAA</left_flank>
        <right_flank>TTTAGGGGCCCTTCTATTACAGGTATTACGGTAGTTGACTAGAAAAGAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGGTAAAACCTGCATCGGAATTCGTTATCCGATCCCACGCTTCGATAGAATCCCTAAAATTTTGAATATTTGAACTAAAATTTTGATTTTTTGAAAGTGAAATTTTGAACCGAAATTTCAAAACCTCTGAAATTTTGAAAACTTTTGGGGCGTAAAAAATTTGAATCAAAGCCTACCCTACAGCTTTCACATGTCATCACTCCCTTGCATCGCATGAATCCGTTGTCTCCACAGATTTTGCAAATTTTCTTCTTTTCATTTTCATTTTCTTTGGGAAGTTCTGGTTCTAATGAGTTGGCAGAATCCATGGCACCTGAAAATTTAGAAATACTGTAGAGCATGTAATAGAAGGGCCCACACTTTGATATCAATTATCTCGACTCCTATGTAAGGTATCGAAAAAGTTCAACTGATAAAATTATTCCGATATTATGATAAAGAATTATCAGTTGATAACTTTTTGATATCTTTGACAGGAAACGAGAAAAATTAGCTCAAATTTAGGGGCCCTTCTATTACAGGTATTACGGTAGTTGACTAGAAAAGAGAAAGAGAGAAAGAGAGAGAGAAAAAATATATAAAATACGAAAAAAAAAGGAGACGACTCTGTATTGTCGAATTAAAAAAAAAGTGGGACCTGAAAATTTGAAAATCTTAGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAAACGTAATATTTCAGATTTTCGCCTCGTTCGAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTTTAGAGATGCTAGCGATCATTTTCATACCAAGAAATCTAAATTTTGTCCAGAAAATCCCACTGGATTCACAGAAATAAGTTTGGTTTACTACGGTAGTGATTTTGAGGCAAGGCCTAGAAAATTGACTTTGAAGCCGCCCGCACTTGGGTTCAAGCCAATGGGTCAGAAATCGCGCCCCAGTAAACTTGAGATTTTAGAAAAAATTCGTTGCTGAATTATGTGGCTGAGGNNN</canonical>
            <polymorphic>CTGGTAAAACCTGCATCGGAATTCGTTATCCGATCCCACGCTTCGATAGAATCCCTAAAATTTTGAATATTTGAACTAAAATTTTGATTTTTTGAAAGTGAAATTTTGAACCGAAATTTCAAAACCTCTGAAATTTTGAAAACTTTTGGGGCGTAAAAAATTTGAATCAAAGCCTACCCTACAGCTTTCACATGTCATCACTCCCTTGCATCGCATGAATCCGTTGTCTCCACAGATTTTGCAAATTTTCTTCTTTTCATTTTCATTTTCTTTGGGAAGTTCTGGTTCTAATGAGTTGGCAGAATCCATGGCACCTGAAAATTTAGAAATACTGTAGAGCATGTAATAGAAGGGCCCACACTTTGATATCAATTATCTCGACTCCTATGTAAGGTATCGAAAAAGTTCAACTGATAAAATTATTCCGATATTATGATAAAGAATTATCAGTTGATAACTTTTTGATATCTTTGACAGGAAACGAGAAAAATTAGCTCAAWTTTAGGGGCCCTTCTATTACAGGTATTACGGTAGTTGACTAGAAAAGAGAAAGAGAGAAAGAGAGAGAGAAAAAATATATAAAATACGAAAAAAAAAGGAGACGACTCTGTATTGTCGAATTAAAAAAAAAGTGGGACCTGAAAATTTGAAAATCTTAGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAAACGTAATATTTCAGATTTTCGCCTCGTTCGAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTTTAGAGATGCTAGCGATCATTTTCATACCAAGAAATCTAAATTTTGTCCAGAAAATCCCACTGGATTCACAGAAATAAGTTTGGTTTACTACGGTAGTGATTTTGAGGCAAGGCCTAGAAAATTGACTTTGAAGCCGCCCGCACTTGGGTTCAAGCCAATGGGTCAGAAATCGCGCCCCAGTAAACTTGAGATTTTAGAAAAAATTCGTTGCTGAATTATGTGGCTGAGGNNN</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>179 163 163 145 85 76 39 31 27 22 21 19 17 13</canonical_bands>
                <polymorphic_bands>324 163 163 85 76 39 31 27 22 21 19 17 13</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>120 91 85 82 81 76 72 51 47 47 39 27 25 24 22 21 19 19 17 13 12 10</canonical_bands>
                <polymorphic_bands>130 91 85 82 81 76 72 51 47 47 39 27 25 24 22 21 19 19 17 13 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGCACCTGAAAATTTAGAA</pcr_primer_p1>
		<pcr_primer_p2>CATAATTCAGCAACGAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>680</pcr_amplicon_size>
		<canonical_amplicon>TGGCACCTGAAAATTTAGAAATACTGTAGAGCATGTAATAGAAGGGCCCACACTTTGATATCAATTATCTCGACTCCTATGTAAGGTATCGAAAAAGTTCAACTGATAAAATTATTCCGATATTATGATAAAGAATTATCAGTTGATAACTTTTTGATATCTTTGACAGGAAACGAGAAAAATTAGCTCAAATTTAGGGGCCCTTCTATTACAGGTATTACGGTAGTTGACTAGAAAAGAGAAAGAGAGAAAGAGAGAGAGAAAAAATATATAAAATACGAAAAAAAAAGGAGACGACTCTGTATTGTCGAATTAAAAAAAAAGTGGGACCTGAAAATTTGAAAATCTTAGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAAACGTAATATTTCAGATTTTCGCCTCGTTCGAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTTTAGAGATGCTAGCGATCATTTTCATACCAAGAAATCTAAATTTTGTCCAGAAAATCCCACTGGATTCACAGAAATAAGTTTGGTTTACTACGGTAGTGATTTTGAGGCAAGGCCTAGAAAATTGACTTTGAAGCCGCCCGCACTTGGGTTCAAGCCAATGGGTCAGAAATCGCGCCCCAGTAAACTTGAGATTTTAGAAAAAATTCGTTGCTGAATTATG</canonical_amplicon>
		<polymorphic_amplicon>TGGCACCTGAAAATTTAGAAATACTGTAGAGCATGTAATAGAAGGGCCCACACTTTGATATCAATTATCTCGACTCCTATGTAAGGTATCGAAAAAGTTCAACTGATAAAATTATTCCGATATTATGATAAAGAATTATCAGTTGATAACTTTTTGATATCTTTGACAGGAAACGAGAAAAATTAGCTCAAWTTTAGGGGCCCTTCTATTACAGGTATTACGGTAGTTGACTAGAAAAGAGAAAGAGAGAAAGAGAGAGAGAAAAAATATATAAAATACGAAAAAAAAAGGAGACGACTCTGTATTGTCGAATTAAAAAAAAAGTGGGACCTGAAAATTTGAAAATCTTAGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAAACGTAATATTTCAGATTTTCGCCTCGTTCGAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTTTAGAGATGCTAGCGATCATTTTCATACCAAGAAATCTAAATTTTGTCCAGAAAATCCCACTGGATTCACAGAAATAAGTTTGGTTTACTACGGTAGTGATTTTGAGGCAAGGCCTAGAAAATTGACTTTGAAGCCGCCCGCACTTGGGTTCAAGCCAATGGGTCAGAAATCGCGCCCCAGTAAACTTGAGATTTTAGAAAAAATTCGTTGCTGAATTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27386</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>74067</contig_pos>
        <strand></strand>
        <context>CTGtattgtc[G/A]aattaaaaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGAAAAAATATATAAAATACGAAAAAAAAAGGAGACGACTCTGTATTGTC</left_flank>
        <right_flank>AATTAAAAAAAAAGTGGGACCTGAAAATTTGAAAATCTTAGCTTTTTTTG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAAACCTCTGAAATTTTGAAAACTTTTGGGGCGTAAAAAATTTGAATCAAAGCCTACCCTACAGCTTTCACATGTCATCACTCCCTTGCATCGCATGAATCCGTTGTCTCCACAGATTTTGCAAATTTTCTTCTTTTCATTTTCATTTTCTTTGGGAAGTTCTGGTTCTAATGAGTTGGCAGAATCCATGGCACCTGAAAATTTAGAAATACTGTAGAGCATGTAATAGAAGGGCCCACACTTTGATATCAATTATCTCGACTCCTATGTAAGGTATCGAAAAAGTTCAACTGATAAAATTATTCCGATATTATGATAAAGAATTATCAGTTGATAACTTTTTGATATCTTTGACAGGAAACGAGAAAAATTAGCTCAAATTTAGGGGCCCTTCTATTACAGGTATTACGGTAGTTGACTAGAAAAGAGAAAGAGAGAAAGAGAGAGAGAAAAAATATATAAAATACGAAAAAAAAAGGAGACGACTCTGTATTGTCGAATTAAAAAAAAAGTGGGACCTGAAAATTTGAAAATCTTAGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAAACGTAATATTTCAGATTTTCGCCTCGTTCGAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTTTAGAGATGCTAGCGATCATTTTCATACCAAGAAATCTAAATTTTGTCCAGAAAATCCCACTGGATTCACAGAAATAAGTTTGGTTTACTACGGTAGTGATTTTGAGGCAAGGCCTAGAAAATTGACTTTGAAGCCGCCCGCACTTGGGTTCAAGCCAATGGGTCAGAAATCGCGCCCCAGTAAACTTGAGATTTTAGAAAAAATTCGTTGCTGAATTATGTGGCTGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>TCAAAACCTCTGAAATTTTGAAAACTTTTGGGGCGTAAAAAATTTGAATCAAAGCCTACCCTACAGCTTTCACATGTCATCACTCCCTTGCATCGCATGAATCCGTTGTCTCCACAGATTTTGCAAATTTTCTTCTTTTCATTTTCATTTTCTTTGGGAAGTTCTGGTTCTAATGAGTTGGCAGAATCCATGGCACCTGAAAATTTAGAAATACTGTAGAGCATGTAATAGAAGGGCCCACACTTTGATATCAATTATCTCGACTCCTATGTAAGGTATCGAAAAAGTTCAACTGATAAAATTATTCCGATATTATGATAAAGAATTATCAGTTGATAACTTTTTGATATCTTTGACAGGAAACGAGAAAAATTAGCTCAAATTTAGGGGCCCTTCTATTACAGGTATTACGGTAGTTGACTAGAAAAGAGAAAGAGAGAAAGAGAGAGAGAAAAAATATATAAAATACGAAAAAAAAAGGAGACGACTCTGTATTGTCRAATTAAAAAAAAAGTGGGACCTGAAAATTTGAAAATCTTAGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAAACGTAATATTTCAGATTTTCGCCTCGTTCGAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTTTAGAGATGCTAGCGATCATTTTCATACCAAGAAATCTAAATTTTGTCCAGAAAATCCCACTGGATTCACAGAAATAAGTTTGGTTTACTACGGTAGTGATTTTGAGGCAAGGCCTAGAAAATTGACTTTGAAGCCGCCCGCACTTGGGTTCAAGCCAATGGGTCAGAAATCGCGCCCCAGTAAACTTGAGATTTTAGAAAAAATTCGTTGCTGAATTATGTGGCTGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>366 261 219 104 31 19</canonical_bands>
                <polymorphic_bands>366 323 261 31 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGCACCTGAAAATTTAGAA</pcr_primer_p1>
		<pcr_primer_p2>CATAATTCAGCAACGAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>680</pcr_amplicon_size>
		<canonical_amplicon>TGGCACCTGAAAATTTAGAAATACTGTAGAGCATGTAATAGAAGGGCCCACACTTTGATATCAATTATCTCGACTCCTATGTAAGGTATCGAAAAAGTTCAACTGATAAAATTATTCCGATATTATGATAAAGAATTATCAGTTGATAACTTTTTGATATCTTTGACAGGAAACGAGAAAAATTAGCTCAAATTTAGGGGCCCTTCTATTACAGGTATTACGGTAGTTGACTAGAAAAGAGAAAGAGAGAAAGAGAGAGAGAAAAAATATATAAAATACGAAAAAAAAAGGAGACGACTCTGTATTGTCGAATTAAAAAAAAAGTGGGACCTGAAAATTTGAAAATCTTAGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAAACGTAATATTTCAGATTTTCGCCTCGTTCGAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTTTAGAGATGCTAGCGATCATTTTCATACCAAGAAATCTAAATTTTGTCCAGAAAATCCCACTGGATTCACAGAAATAAGTTTGGTTTACTACGGTAGTGATTTTGAGGCAAGGCCTAGAAAATTGACTTTGAAGCCGCCCGCACTTGGGTTCAAGCCAATGGGTCAGAAATCGCGCCCCAGTAAACTTGAGATTTTAGAAAAAATTCGTTGCTGAATTATG</canonical_amplicon>
		<polymorphic_amplicon>TGGCACCTGAAAATTTAGAAATACTGTAGAGCATGTAATAGAAGGGCCCACACTTTGATATCAATTATCTCGACTCCTATGTAAGGTATCGAAAAAGTTCAACTGATAAAATTATTCCGATATTATGATAAAGAATTATCAGTTGATAACTTTTTGATATCTTTGACAGGAAACGAGAAAAATTAGCTCAAATTTAGGGGCCCTTCTATTACAGGTATTACGGTAGTTGACTAGAAAAGAGAAAGAGAGAAAGAGAGAGAGAAAAAATATATAAAATACGAAAAAAAAAGGAGACGACTCTGTATTGTCRAATTAAAAAAAAAGTGGGACCTGAAAATTTGAAAATCTTAGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAAACGTAATATTTCAGATTTTCGCCTCGTTCGAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTTTAGAGATGCTAGCGATCATTTTCATACCAAGAAATCTAAATTTTGTCCAGAAAATCCCACTGGATTCACAGAAATAAGTTTGGTTTACTACGGTAGTGATTTTGAGGCAAGGCCTAGAAAATTGACTTTGAAGCCGCCCGCACTTGGGTTCAAGCCAATGGGTCAGAAATCGCGCCCCAGTAAACTTGAGATTTTAGAAAAAATTCGTTGCTGAATTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27387</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>74118</contig_pos>
        <strand></strand>
        <context>gctttttttg[A/T]tctacgaaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTAAAAAAAAAGTGGGACCTGAAAATTTGAAAATCTTAGCTTTTTTTG</left_flank>
        <right_flank>TCTACGAAAAAGTGCGGCAAAAAACGTAATATTTCAGATTTTCGCCTCGT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCCTACCCTACAGCTTTCACATGTCATCACTCCCTTGCATCGCATGAATCCGTTGTCTCCACAGATTTTGCAAATTTTCTTCTTTTCATTTTCATTTTCTTTGGGAAGTTCTGGTTCTAATGAGTTGGCAGAATCCATGGCACCTGAAAATTTAGAAATACTGTAGAGCATGTAATAGAAGGGCCCACACTTTGATATCAATTATCTCGACTCCTATGTAAGGTATCGAAAAAGTTCAACTGATAAAATTATTCCGATATTATGATAAAGAATTATCAGTTGATAACTTTTTGATATCTTTGACAGGAAACGAGAAAAATTAGCTCAAATTTAGGGGCCCTTCTATTACAGGTATTACGGTAGTTGACTAGAAAAGAGAAAGAGAGAAAGAGAGAGAGAAAAAATATATAAAATACGAAAAAAAAAGGAGACGACTCTGTATTGTCGAATTAAAAAAAAAGTGGGACCTGAAAATTTGAAAATCTTAGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAAACGTAATATTTCAGATTTTCGCCTCGTTCGAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTTTAGAGATGCTAGCGATCATTTTCATACCAAGAAATCTAAATTTTGTCCAGAAAATCCCACTGGATTCACAGAAATAAGTTTGGTTTACTACGGTAGTGATTTTGAGGCAAGGCCTAGAAAATTGACTTTGAAGCCGCCCGCACTTGGGTTCAAGCCAATGGGTCAGAAATCGCGCCCCAGTAAACTTGAGATTTTAGAAAAAATTCGTTGCTGAATTATGTGGCTGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>AAGCCTACCCTACAGCTTTCACATGTCATCACTCCCTTGCATCGCATGAATCCGTTGTCTCCACAGATTTTGCAAATTTTCTTCTTTTCATTTTCATTTTCTTTGGGAAGTTCTGGTTCTAATGAGTTGGCAGAATCCATGGCACCTGAAAATTTAGAAATACTGTAGAGCATGTAATAGAAGGGCCCACACTTTGATATCAATTATCTCGACTCCTATGTAAGGTATCGAAAAAGTTCAACTGATAAAATTATTCCGATATTATGATAAAGAATTATCAGTTGATAACTTTTTGATATCTTTGACAGGAAACGAGAAAAATTAGCTCAAATTTAGGGGCCCTTCTATTACAGGTATTACGGTAGTTGACTAGAAAAGAGAAAGAGAGAAAGAGAGAGAGAAAAAATATATAAAATACGAAAAAAAAAGGAGACGACTCTGTATTGTCGAATTAAAAAAAAAGTGGGACCTGAAAATTTGAAAATCTTAGCTTTTTTTGWTCTACGAAAAAGTGCGGCAAAAAACGTAATATTTCAGATTTTCGCCTCGTTCGAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTTTAGAGATGCTAGCGATCATTTTCATACCAAGAAATCTAAATTTTGTCCAGAAAATCCCACTGGATTCACAGAAATAAGTTTGGTTTACTACGGTAGTGATTTTGAGGCAAGGCCTAGAAAATTGACTTTGAAGCCGCCCGCACTTGGGTTCAAGCCAATGGGTCAGAAATCGCGCCCCAGTAAACTTGAGATTTTAGAAAAAATTCGTTGCTGAATTATGTGGCTGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>498 388 114</canonical_bands>
                <polymorphic_bands>612 388</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGCACCTGAAAATTTAGAA</pcr_primer_p1>
		<pcr_primer_p2>CATAATTCAGCAACGAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>680</pcr_amplicon_size>
		<canonical_amplicon>TGGCACCTGAAAATTTAGAAATACTGTAGAGCATGTAATAGAAGGGCCCACACTTTGATATCAATTATCTCGACTCCTATGTAAGGTATCGAAAAAGTTCAACTGATAAAATTATTCCGATATTATGATAAAGAATTATCAGTTGATAACTTTTTGATATCTTTGACAGGAAACGAGAAAAATTAGCTCAAATTTAGGGGCCCTTCTATTACAGGTATTACGGTAGTTGACTAGAAAAGAGAAAGAGAGAAAGAGAGAGAGAAAAAATATATAAAATACGAAAAAAAAAGGAGACGACTCTGTATTGTCGAATTAAAAAAAAAGTGGGACCTGAAAATTTGAAAATCTTAGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAAACGTAATATTTCAGATTTTCGCCTCGTTCGAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTTTAGAGATGCTAGCGATCATTTTCATACCAAGAAATCTAAATTTTGTCCAGAAAATCCCACTGGATTCACAGAAATAAGTTTGGTTTACTACGGTAGTGATTTTGAGGCAAGGCCTAGAAAATTGACTTTGAAGCCGCCCGCACTTGGGTTCAAGCCAATGGGTCAGAAATCGCGCCCCAGTAAACTTGAGATTTTAGAAAAAATTCGTTGCTGAATTATG</canonical_amplicon>
		<polymorphic_amplicon>TGGCACCTGAAAATTTAGAAATACTGTAGAGCATGTAATAGAAGGGCCCACACTTTGATATCAATTATCTCGACTCCTATGTAAGGTATCGAAAAAGTTCAACTGATAAAATTATTCCGATATTATGATAAAGAATTATCAGTTGATAACTTTTTGATATCTTTGACAGGAAACGAGAAAAATTAGCTCAAATTTAGGGGCCCTTCTATTACAGGTATTACGGTAGTTGACTAGAAAAGAGAAAGAGAGAAAGAGAGAGAGAAAAAATATATAAAATACGAAAAAAAAAGGAGACGACTCTGTATTGTCGAATTAAAAAAAAAGTGGGACCTGAAAATTTGAAAATCTTAGCTTTTTTTGWTCTACGAAAAAGTGCGGCAAAAAACGTAATATTTCAGATTTTCGCCTCGTTCGAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTTTAGAGATGCTAGCGATCATTTTCATACCAAGAAATCTAAATTTTGTCCAGAAAATCCCACTGGATTCACAGAAATAAGTTTGGTTTACTACGGTAGTGATTTTGAGGCAAGGCCTAGAAAATTGACTTTGAAGCCGCCCGCACTTGGGTTCAAGCCAATGGGTCAGAAATCGCGCCCCAGTAAACTTGAGATTTTAGAAAAAATTCGTTGCTGAATTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27388</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>81820</contig_pos>
        <strand>+</strand>
        <context>GAATCTTCCC[A/G]TTTTCTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAGACTTCTCCCTATCAAATTCTAAATTTAATTTTTTCGAATCTTCCC</left_flank>
        <right_flank>TTTTCTTTTTTTCGGATTCAAAATTTTTGATACTCCCAGAACTTGGTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGCAGTCTGAAATTTCAAAGATTATCATTTTTAGATCTGGAATATTCCAAACTTACCGTACTCTTACATGGACCCGGAATTTCCAAAATTTCAGATAAACTGGAAGTGGAGGATTGTACAGAATTTTCCTCTGAATTTTCAGATTCCATTTTCCTCAAATTCTCCTCTTGAACCAAAAAATCGAAAAAGCTCAATTCTTTGGAATCCCGATTTTCTGAACTCTGGAAGATCAGTATTTCAGATTTCGAATCAATGAAAATGGGGACCTACCGTTTTCTTAACTTGCTCAAAACTCTGTGATAGTAATTGCAAAATTTCATCTAAATTGGGACATACCATATTCGAAGTTTTCAGAACAGGTCTCTGAAAACAATTTTTAAATTTACAAATTCAAAAAAAATCACCCACCTCAATTTGGTTCAAATTCACAGAATCTTTCTGGGAATTTTCAGACTTCTCCCTATCAAATTCTAAATTTAATTTTTTCGAATCTTCCCTTTTTCTTTTTTTCGGATTCAAAATTTTTGATACTCCCAGAACTTGGTTTGAAGAATTCTGAAAGTTTGAAATTTTAGATTAAAACTTTTCAAAAACCAAGTTACCGTATCATAAATTTCAGATAATCTGGCACTTGCGTCCCTCAAAATTTTCATAATAGATTCCGGAAATACAGGCTGAAAATCGAATTTTTCAAAAAAAAAATCTGAAAATCTTCAAAACCTTTTCTGCACGTTTACAATTCTTTGGGAGAAAATGTAGTTGTAGTTTTTTCAAACTTTTGAATGAAACTTTGCAAATTTTGCACTGCATCAATCCTGATTTTTTGTGAATATCCAAAATGTGATTTTCCAAATTCTTGTATTCCGAAAAAATAGAATCACAAGATGGGCACTCGAATTGTGGCTGCTTCATGATATGAGACATCATGTGGGTTGTAAGCTGAAAATGAAAAAAAAATCTGAAATTTTTAAATTTTAAAGGTGGGGGGACATGAAAAA</canonical>
            <polymorphic>GGAGCAGTCTGAAATTTCAAAGATTATCATTTTTAGATCTGGAATATTCCAAACTTACCGTACTCTTACATGGACCCGGAATTTCCAAAATTTCAGATAAACTGGAAGTGGAGGATTGTACAGAATTTTCCTCTGAATTTTCAGATTCCATTTTCCTCAAATTCTCCTCTTGAACCAAAAAATCGAAAAAGCTCAATTCTTTGGAATCCCGATTTTCTGAACTCTGGAAGATCAGTATTTCAGATTTCGAATCAATGAAAATGGGGACCTACCGTTTTCTTAACTTGCTCAAAACTCTGTGATAGTAATTGCAAAATTTCATCTAAATTGGGACATACCATATTCGAAGTTTTCAGAACAGGTCTCTGAAAACAATTTTTAAATTTACAAATTCAAAAAAAATCACCCACCTCAATTTGGTTCAAATTCACAGAATCTTTCTGGGAATTTTCAGACTTCTCCCTATCAAATTCTAAATTTAATTTTTTCGAATCTTCCCRTTTTCTTTTTTTCGGATTCAAAATTTTTGATACTCCCAGAACTTGGTTTGAAGAATTCTGAAAGTTTGAAATTTTAGATTAAAACTTTTCAAAAACCAAGTTACCGTATCATAAATTTCAGATAATCTGGCACTTGCGTCCCTCAAAATTTTCATAATAGATTCCGGAAATACAGGCTGAAAATCGAATTTTTCAAAAAAAAAATCTGAAAATCTTCAAAACCTTTTCTGCACGTTTACAATTCTTTGGGAGAAAATGTAGTTGTAGTTTTTTCAAACTTTTGAATGAAACTTTGCAAATTTTGCACTGCATCAATCCTGATTTTTTGTGAATATCCAAAATGTGATTTTCCAAATTCTTGTATTCCGAAAAAATAGAATCACAAGATGGGCACTCGAATTGTGGCTGCTTCATGATATGAGACATCATGTGGGTTGTAAGCTGAAAATGAAAAAAAAATCTGAAATTTTTAAATTTTAAAGGTGGGGGGACATGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTCATCTAAATTGGGACAT</pcr_primer_p1>
		<pcr_primer_p2>TTCAGAATTCTTCAAACCAAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATTTCATCTAAATTGGGACATACCATATTCGAAGTTTTCAGAACAGGTCTCTGAAAACAATTTTTAAATTTACAAATTCAAAAAAAATCACCCACCTCAATTTGGTTCAAATTCACAGAATCTTTCTGGGAATTTTCAGACTTCTCCCTATCAAATTCTAAATTTAATTTTTTCGAATCTTCCCTTTTTCTTTTTTTCGGATTCAAAATTTTTGATACTCCCAGAACTTGGTTTGAAGAATTCTGAA</canonical_amplicon>
		<polymorphic_amplicon>AAATTTCATCTAAATTGGGACATACCATATTCGAAGTTTTCAGAACAGGTCTCTGAAAACAATTTTTAAATTTACAAATTCAAAAAAAATCACCCACCTCAATTTGGTTCAAATTCACAGAATCTTTCTGGGAATTTTCAGACTTCTCCCTATCAAATTCTAAATTTAATTTTTTCGAATCTTCCCRTTTTCTTTTTTTCGGATTCAAAATTTTTGATACTCCCAGAACTTGGTTTGAAGAATTCTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27389</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>86280</contig_pos>
        <strand>+</strand>
        <context>AATTTTTGGA[A/C]AAATTGCATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAATATTGACAATTATTTCTCGAAGTATGATTAATTTCGCAATTTTTGGA</left_flank>
        <right_flank>AAATTGCATTTCAATTGGTCACTTGTCTTCTTGTGGTGATAATAGAACGT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCCATCATCTCAATTCCTATAAAAGATATTAAAAATCTATCAATGATAGAATGCTTGTCATAATCTAATCAACATTTCATCAATTGACAATTTTTTCATACCTTTCACAGGAACCGAGATAATTGAGCTCAAAATTCATATGCATATAGGGTGCTCTACTATTAGAACTAGGAAACTTCATTCCCTTCAAACTTCCATTTTCCCGAAACACCCAAAATTCCACTCACCAAACAATCCTTGCACGTTATCACTCCATTGAATTCATCAGTCGCCTCATCTCCACAAATCTCACAAACACCCAAATGTTCCACAGATACATCAGAATATGTTATTCGGTCTGGAAAAAAAACAAATTCAAAATCTTCAAAATTCGCGCCAAATTGAAAATTTTAAGTTTCAAACTTACCGTCTTTTGAAAATCCGTTTTTGAGACACTTTTGAAATCGGCAATATTGACAATTATTTCTCGAAGTATGATTAATTTCGCAATTTTTGGAAAAATTGCATTTCAATTGGTCACTTGTCTTCTTGTGGTGATAATAGAACGTCTGGAAATTTAACCATAATTAACTCTTTAATTTTTCTTCGAGGTCAATTATCTCGGTTCTTATCAGAGATTTCAAAAATCTGCCAACTGATAAAACGTTTGTCATAATCTAATCTACATTTAATCAGCGAAAATTGTTTTGATATATTTTACAGGAATTGAAATAATTGAGCTCAAAGTTATGAGTTTCGTAAGCTTACGCTGCAATTTTTACATGTTATCACTCCTTTATACCGAAATGTAACACCATTTCCACAAATTTGACAACATTTTGAATCATTTGGATTTTCAATTGAGTCGTCTGGATCCATGAGATCTAAAAAAACGACTGAATGATTTAAAAATTGAAAAAATAGTCAAAATATTTTCGAAAAAAAAACGGAGAATTGTGCAAAAATAGCATTAAAAGGGGAGAATAAACTCCAGAAAAATGCAAAGAAGTGCCATGTCG</canonical>
            <polymorphic>GCTCCATCATCTCAATTCCTATAAAAGATATTAAAAATCTATCAATGATAGAATGCTTGTCATAATCTAATCAACATTTCATCAATTGACAATTTTTTCATACCTTTCACAGGAACCGAGATAATTGAGCTCAAAATTCATATGCATATAGGGTGCTCTACTATTAGAACTAGGAAACTTCATTCCCTTCAAACTTCCATTTTCCCGAAACACCCAAAATTCCACTCACCAAACAATCCTTGCACGTTATCACTCCATTGAATTCATCAGTCGCCTCATCTCCACAAATCTCACAAACACCCAAATGTTCCACAGATACATCAGAATATGTTATTCGGTCTGGAAAAAAAACAAATTCAAAATCTTCAAAATTCGCGCCAAATTGAAAATTTTAAGTTTCAAACTTACCGTCTTTTGAAAATCCGTTTTTGAGACACTTTTGAAATCGGCAATATTGACAATTATTTCTCGAAGTATGATTAATTTCGCAATTTTTGGAMAAATTGCATTTCAATTGGTCACTTGTCTTCTTGTGGTGATAATAGAACGTCTGGAAATTTAACCATAATTAACTCTTTAATTTTTCTTCGAGGTCAATTATCTCGGTTCTTATCAGAGATTTCAAAAATCTGCCAACTGATAAAACGTTTGTCATAATCTAATCTACATTTAATCAGCGAAAATTGTTTTGATATATTTTACAGGAATTGAAATAATTGAGCTCAAAGTTATGAGTTTCGTAAGCTTACGCTGCAATTTTTACATGTTATCACTCCTTTATACCGAAATGTAACACCATTTCCACAAATTTGACAACATTTTGAATCATTTGGATTTTCAATTGAGTCGTCTGGATCCATGAGATCTAAAAAAACGACTGAATGATTTAAAAATTGAAAAAATAGTCAAAATATTTTCGAAAAAAAAACGGAGAATTGTGCAAAAATAGCATTAAAAGGGGAGAATAAACTCCAGAAAAATGCAAAGAAGTGCCATGTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCAGAATATGTTATTCGGTCT</pcr_primer_p1>
		<pcr_primer_p2>GGTTAAATTTCCAGACGTTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CATCAGAATATGTTATTCGGTCTGGAAAAAAAACAAATTCAAAATCTTCAAAATTCGCGCCAAATTGAAAATTTTAAGTTTCAAACTTACCGTCTTTTGAAAATCCGTTTTTGAGACACTTTTGAAATCGGCAATATTGACAATTATTTCTCGAAGTATGATTAATTTCGCAATTTTTGGAAAAATTGCATTTCAATTGGTCACTTGTCTTCTTGTGGTGATAATAGAACGTCTGGAAATTTAACC</canonical_amplicon>
		<polymorphic_amplicon>CATCAGAATATGTTATTCGGTCTGGAAAAAAAACAAATTCAAAATCTTCAAAATTCGCGCCAAATTGAAAATTTTAAGTTTCAAACTTACCGTCTTTTGAAAATCCGTTTTTGAGACACTTTTGAAATCGGCAATATTGACAATTATTTCTCGAAGTATGATTAATTTCGCAATTTTTGGAMAAATTGCATTTCAATTGGTCACTTGTCTTCTTGTGGTGATAATAGAACGTCTGGAAATTTAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27390</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>86427</contig_pos>
        <strand></strand>
        <context>ctgataaaac[G/T]tttgtcataa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTATCTCGGTTCTTATCAGAGATTTCAAAAATCTGCCAACTGATAAAAC</left_flank>
        <right_flank>TTTGTCATAATCTAATCTACATTTAATCAGCGAAAATTGTTTTGATATAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGGGTGCTCTACTATTAGAACTAGGAAACTTCATTCCCTTCAAACTTCCATTTTCCCGAAACACCCAAAATTCCACTCACCAAACAATCCTTGCACGTTATCACTCCATTGAATTCATCAGTCGCCTCATCTCCACAAATCTCACAAACACCCAAATGTTCCACAGATACATCAGAATATGTTATTCGGTCTGGAAAAAAAACAAATTCAAAATCTTCAAAATTCGCGCCAAATTGAAAATTTTAAGTTTCAAACTTACCGTCTTTTGAAAATCCGTTTTTGAGACACTTTTGAAATCGGCAATATTGACAATTATTTCTCGAAGTATGATTAATTTCGCAATTTTTGGAAAAATTGCATTTCAATTGGTCACTTGTCTTCTTGTGGTGATAATAGAACGTCTGGAAATTTAACCATAATTAACTCTTTAATTTTTCTTCGAGGTCAATTATCTCGGTTCTTATCAGAGATTTCAAAAATCTGCCAACTGATAAAACGTTTGTCATAATCTAATCTACATTTAATCAGCGAAAATTGTTTTGATATATTTTACAGGAATTGAAATAATTGAGCTCAAAGTTATGAGTTTCGTAAGCTTACGCTGCAATTTTTACATGTTATCACTCCTTTATACCGAAATGTAACACCATTTCCACAAATTTGACAACATTTTGAATCATTTGGATTTTCAATTGAGTCGTCTGGATCCATGAGATCTAAAAAAACGACTGAATGATTTAAAAATTGAAAAAATAGTCAAAATATTTTCGAAAAAAAAACGGAGAATTGTGCAAAAATAGCATTAAAAGGGGAGAATAAACTCCAGAAAAATGCAAAGAAGTGCCATGTCGAATAGGTTGAAAAAATCAATAAACAAAAAATGTGTAACAGAGTTTCTGCGAAAATTATTTTTGATCTACCGCCGAATTTGGTGTAGTAATTTCGAGATTTTCTTAAACCTAGAAAATAGAAAATTTTGAAAATTCGAAAAAAAAAGT</canonical>
            <polymorphic>ATAGGGTGCTCTACTATTAGAACTAGGAAACTTCATTCCCTTCAAACTTCCATTTTCCCGAAACACCCAAAATTCCACTCACCAAACAATCCTTGCACGTTATCACTCCATTGAATTCATCAGTCGCCTCATCTCCACAAATCTCACAAACACCCAAATGTTCCACAGATACATCAGAATATGTTATTCGGTCTGGAAAAAAAACAAATTCAAAATCTTCAAAATTCGCGCCAAATTGAAAATTTTAAGTTTCAAACTTACCGTCTTTTGAAAATCCGTTTTTGAGACACTTTTGAAATCGGCAATATTGACAATTATTTCTCGAAGTATGATTAATTTCGCAATTTTTGGAAAAATTGCATTTCAATTGGTCACTTGTCTTCTTGTGGTGATAATAGAACGTCTGGAAATTTAACCATAATTAACTCTTTAATTTTTCTTCGAGGTCAATTATCTCGGTTCTTATCAGAGATTTCAAAAATCTGCCAACTGATAAAACKTTTGTCATAATCTAATCTACATTTAATCAGCGAAAATTGTTTTGATATATTTTACAGGAATTGAAATAATTGAGCTCAAAGTTATGAGTTTCGTAAGCTTACGCTGCAATTTTTACATGTTATCACTCCTTTATACCGAAATGTAACACCATTTCCACAAATTTGACAACATTTTGAATCATTTGGATTTTCAATTGAGTCGTCTGGATCCATGAGATCTAAAAAAACGACTGAATGATTTAAAAATTGAAAAAATAGTCAAAATATTTTCGAAAAAAAAACGGAGAATTGTGCAAAAATAGCATTAAAAGGGGAGAATAAACTCCAGAAAAATGCAAAGAAGTGCCATGTCGAATAGGTTGAAAAAATCAATAAACAAAAAATGTGTAACAGAGTTTCTGCGAAAATTATTTTTGATCTACCGCCGAATTTGGTGTAGTAATTTCGAGATTTTCTTAAACCTAGAAAATAGAAAATTTTGAAAATTCGAAAAAAAAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>502 303 98 97</canonical_bands>
                <polymorphic_bands>600 303 97</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAGAACGTCTGGAAATTTAACC</pcr_primer_p1>
		<pcr_primer_p2>CATTTCGGTATAAAGGAGTGATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATAGAACGTCTGGAAATTTAACCATAATTAACTCTTTAATTTTTCTTCGAGGTCAATTATCTCGGTTCTTATCAGAGATTTCAAAAATCTGCCAACTGATAAAACGTTTGTCATAATCTAATCTACATTTAATCAGCGAAAATTGTTTTGATATATTTTACAGGAATTGAAATAATTGAGCTCAAAGTTATGAGTTTCGTAAGCTTACGCTGCAATTTTTACATGTTATCACTCCTTTATACCGAAATG</canonical_amplicon>
		<polymorphic_amplicon>ATAGAACGTCTGGAAATTTAACCATAATTAACTCTTTAATTTTTCTTCGAGGTCAATTATCTCGGTTCTTATCAGAGATTTCAAAAATCTGCCAACTGATAAAACKTTTGTCATAATCTAATCTACATTTAATCAGCGAAAATTGTTTTGATATATTTTACAGGAATTGAAATAATTGAGCTCAAAGTTATGAGTTTCGTAAGCTTACGCTGCAATTTTTACATGTTATCACTCCTTTATACCGAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27391</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>86441</contig_pos>
        <strand></strand>
        <context>gtcataatct[A/C]atctacattt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATCAGAGATTTCAAAAATCTGCCAACTGATAAAACGTTTGTCATAATCT</left_flank>
        <right_flank>ATCTACATTTAATCAGCGAAAATTGTTTTGATATATTTTACAGGAATTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTAGAACTAGGAAACTTCATTCCCTTCAAACTTCCATTTTCCCGAAACACCCAAAATTCCACTCACCAAACAATCCTTGCACGTTATCACTCCATTGAATTCATCAGTCGCCTCATCTCCACAAATCTCACAAACACCCAAATGTTCCACAGATACATCAGAATATGTTATTCGGTCTGGAAAAAAAACAAATTCAAAATCTTCAAAATTCGCGCCAAATTGAAAATTTTAAGTTTCAAACTTACCGTCTTTTGAAAATCCGTTTTTGAGACACTTTTGAAATCGGCAATATTGACAATTATTTCTCGAAGTATGATTAATTTCGCAATTTTTGGAAAAATTGCATTTCAATTGGTCACTTGTCTTCTTGTGGTGATAATAGAACGTCTGGAAATTTAACCATAATTAACTCTTTAATTTTTCTTCGAGGTCAATTATCTCGGTTCTTATCAGAGATTTCAAAAATCTGCCAACTGATAAAACGTTTGTCATAATCTAATCTACATTTAATCAGCGAAAATTGTTTTGATATATTTTACAGGAATTGAAATAATTGAGCTCAAAGTTATGAGTTTCGTAAGCTTACGCTGCAATTTTTACATGTTATCACTCCTTTATACCGAAATGTAACACCATTTCCACAAATTTGACAACATTTTGAATCATTTGGATTTTCAATTGAGTCGTCTGGATCCATGAGATCTAAAAAAACGACTGAATGATTTAAAAATTGAAAAAATAGTCAAAATATTTTCGAAAAAAAAACGGAGAATTGTGCAAAAATAGCATTAAAAGGGGAGAATAAACTCCAGAAAAATGCAAAGAAGTGCCATGTCGAATAGGTTGAAAAAATCAATAAACAAAAAATGTGTAACAGAGTTTCTGCGAAAATTATTTTTGATCTACCGCCGAATTTGGTGTAGTAATTTCGAGATTTTCTTAAACCTAGAAAATAGAAAATTTTGAAAATTCGAAAAAAAAAGTAGGAAACTTTGAAA</canonical>
            <polymorphic>TATTAGAACTAGGAAACTTCATTCCCTTCAAACTTCCATTTTCCCGAAACACCCAAAATTCCACTCACCAAACAATCCTTGCACGTTATCACTCCATTGAATTCATCAGTCGCCTCATCTCCACAAATCTCACAAACACCCAAATGTTCCACAGATACATCAGAATATGTTATTCGGTCTGGAAAAAAAACAAATTCAAAATCTTCAAAATTCGCGCCAAATTGAAAATTTTAAGTTTCAAACTTACCGTCTTTTGAAAATCCGTTTTTGAGACACTTTTGAAATCGGCAATATTGACAATTATTTCTCGAAGTATGATTAATTTCGCAATTTTTGGAAAAATTGCATTTCAATTGGTCACTTGTCTTCTTGTGGTGATAATAGAACGTCTGGAAATTTAACCATAATTAACTCTTTAATTTTTCTTCGAGGTCAATTATCTCGGTTCTTATCAGAGATTTCAAAAATCTGCCAACTGATAAAACGTTTGTCATAATCTMATCTACATTTAATCAGCGAAAATTGTTTTGATATATTTTACAGGAATTGAAATAATTGAGCTCAAAGTTATGAGTTTCGTAAGCTTACGCTGCAATTTTTACATGTTATCACTCCTTTATACCGAAATGTAACACCATTTCCACAAATTTGACAACATTTTGAATCATTTGGATTTTCAATTGAGTCGTCTGGATCCATGAGATCTAAAAAAACGACTGAATGATTTAAAAATTGAAAAAATAGTCAAAATATTTTCGAAAAAAAAACGGAGAATTGTGCAAAAATAGCATTAAAAGGGGAGAATAAACTCCAGAAAAATGCAAAGAAGTGCCATGTCGAATAGGTTGAAAAAATCAATAAACAAAAAATGTGTAACAGAGTTTCTGCGAAAATTATTTTTGATCTACCGCCGAATTTGGTGTAGTAATTTCGAGATTTTCTTAAACCTAGAAAATAGAAAATTTTGAAAATTCGAAAAAAAAAGTAGGAAACTTTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGAACGTCTGGAAATTTAACC</pcr_primer_p1>
		<pcr_primer_p2>CATTTCGGTATAAAGGAGTGATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATAGAACGTCTGGAAATTTAACCATAATTAACTCTTTAATTTTTCTTCGAGGTCAATTATCTCGGTTCTTATCAGAGATTTCAAAAATCTGCCAACTGATAAAACGTTTGTCATAATCTAATCTACATTTAATCAGCGAAAATTGTTTTGATATATTTTACAGGAATTGAAATAATTGAGCTCAAAGTTATGAGTTTCGTAAGCTTACGCTGCAATTTTTACATGTTATCACTCCTTTATACCGAAATG</canonical_amplicon>
		<polymorphic_amplicon>ATAGAACGTCTGGAAATTTAACCATAATTAACTCTTTAATTTTTCTTCGAGGTCAATTATCTCGGTTCTTATCAGAGATTTCAAAAATCTGCCAACTGATAAAACGTTTGTCATAATCTMATCTACATTTAATCAGCGAAAATTGTTTTGATATATTTTACAGGAATTGAAATAATTGAGCTCAAAGTTATGAGTTTCGTAAGCTTACGCTGCAATTTTTACATGTTATCACTCCTTTATACCGAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27392</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>93064</contig_pos>
        <strand></strand>
        <context>aatgtgtcaa[C/T]tgacaaaata</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGAGTCCACATATCCGAATATCTATACAAGATATCAAAAATGTGTCAA</left_flank>
        <right_flank>TGACAAAATACTTCTGACATTATGATAAACAATTTATTTGTTGACAACTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCACCAATATATTATCAGTTGACAGATTTTTGATATCTCTTATAGGAACTGAGATAAAGGAGCTTAAAGTGCGAATAAGGTAAGCAAAAGCTCAAACCCTCAAATTTTTTGCTGTCTCATCTTTTTCAATTGAAAATATTTTGGTTCAGGTAAATTTTATCGAAAAACTATCAAGTGACAAAATTTTTATCAACAAATTTCACACATTTTATGTTTGAATTTTACTTCTAATAGACTGTCAGCAAATTTTTTTTGAACATGTTTACCTCAATTTCTGTGAGAGCTATTAAAAAATCGTTAGAAAATAAAATGTTTGATATTTGGTGATAAAAATGTTGTCAGTTAACAATTTTTTGATAGCATTTACCTGAACCAAAATGAAGTTTAAACTTGAAAACCTAAAACTTGAATACTAAAAACCTGTAATAAAAGAGCCCACACTGTCAACTTTGAGTCCACATATCCGAATATCTATACAAGATATCAAAAATGTGTCAACTGACAAAATACTTCTGACATTATGATAAACAATTTATTTGTTGACAACTTTTTTGTGTCTTTCACAGGAACTGAGATGAACTGGCTCAAAGATAGGGTGCCTTTCTATTACAGGTTGCTTCTAAAAACCAAAAAATTAGGTCAACTCACCACTTGAAATTCGAAAAATTATTGAAATCTCCATTCTGCTTGTCTCCCATATTCATGTTTCGCACATTTTTGAATTTTTGAGAAATCATAAATTCTTTTCCCATTTTCAGAATTTTTTTTGAAAATTCAAAAATGATGAGGAAGAAGAATGAAGTGCGGTAAACAATGGAAACCAAATTTACTGATAAGAAAAATGCATTATCAGGAAAAAAAAGGGGAAAAATCACGAGGAGAATTAGAAAACAGGAATTGGAAAACAGGAATTGGTCAAAACTTCTCAAAACTTTTCTACTTTTCTCTTCATTCATTCCTAATATTTTCACACGAACATTCACTTCCAAATTTCCATTA</canonical>
            <polymorphic>CTCACCAATATATTATCAGTTGACAGATTTTTGATATCTCTTATAGGAACTGAGATAAAGGAGCTTAAAGTGCGAATAAGGTAAGCAAAAGCTCAAACCCTCAAATTTTTTGCTGTCTCATCTTTTTCAATTGAAAATATTTTGGTTCAGGTAAATTTTATCGAAAAACTATCAAGTGACAAAATTTTTATCAACAAATTTCACACATTTTATGTTTGAATTTTACTTCTAATAGACTGTCAGCAAATTTTTTTTGAACATGTTTACCTCAATTTCTGTGAGAGCTATTAAAAAATCGTTAGAAAATAAAATGTTTGATATTTGGTGATAAAAATGTTGTCAGTTAACAATTTTTTGATAGCATTTACCTGAACCAAAATGAAGTTTAAACTTGAAAACCTAAAACTTGAATACTAAAAACCTGTAATAAAAGAGCCCACACTGTCAACTTTGAGTCCACATATCCGAATATCTATACAAGATATCAAAAATGTGTCAAYTGACAAAATACTTCTGACATTATGATAAACAATTTATTTGTTGACAACTTTTTTGTGTCTTTCACAGGAACTGAGATGAACTGGCTCAAAGATAGGGTGCCTTTCTATTACAGGTTGCTTCTAAAAACCAAAAAATTAGGTCAACTCACCACTTGAAATTCGAAAAATTATTGAAATCTCCATTCTGCTTGTCTCCCATATTCATGTTTCGCACATTTTTGAATTTTTGAGAAATCATAAATTCTTTTCCCATTTTCAGAATTTTTTTTGAAAATTCAAAAATGATGAGGAAGAAGAATGAAGTGCGGTAAACAATGGAAACCAAATTTACTGATAAGAAAAATGCATTATCAGGAAAAAAAAGGGGAAAAATCACGAGGAGAATTAGAAAACAGGAATTGGAAAACAGGAATTGGTCAAAACTTCTCAAAACTTTTCTACTTTTCTCTTCATTCATTCCTAATATTTTCACACGAACATTCACTTCCAAATTTCCATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>358 324 101 100 51 45 21</canonical_bands>
                <polymorphic_bands>358 324 101 100 96 21</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>243 190 168 101 100 81 45 40 21 11</canonical_bands>
                <polymorphic_bands>243 190 168 101 100 85 81 21 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACACATTTTATGTTTGAATTTTAC</pcr_primer_p1>
		<pcr_primer_p2>AGTGGTGAGTTGACCTAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>452</pcr_amplicon_size>
		<canonical_amplicon>CACACATTTTATGTTTGAATTTTACTTCTAATAGACTGTCAGCAAATTTTTTTTGAACATGTTTACCTCAATTTCTGTGAGAGCTATTAAAAAATCGTTAGAAAATAAAATGTTTGATATTTGGTGATAAAAATGTTGTCAGTTAACAATTTTTTGATAGCATTTACCTGAACCAAAATGAAGTTTAAACTTGAAAACCTAAAACTTGAATACTAAAAACCTGTAATAAAAGAGCCCACACTGTCAACTTTGAGTCCACATATCCGAATATCTATACAAGATATCAAAAATGTGTCAACTGACAAAATACTTCTGACATTATGATAAACAATTTATTTGTTGACAACTTTTTTGTGTCTTTCACAGGAACTGAGATGAACTGGCTCAAAGATAGGGTGCCTTTCTATTACAGGTTGCTTCTAAAAACCAAAAAATTAGGTCAACTCACCACT</canonical_amplicon>
		<polymorphic_amplicon>CACACATTTTATGTTTGAATTTTACTTCTAATAGACTGTCAGCAAATTTTTTTTGAACATGTTTACCTCAATTTCTGTGAGAGCTATTAAAAAATCGTTAGAAAATAAAATGTTTGATATTTGGTGATAAAAATGTTGTCAGTTAACAATTTTTTGATAGCATTTACCTGAACCAAAATGAAGTTTAAACTTGAAAACCTAAAACTTGAATACTAAAAACCTGTAATAAAAGAGCCCACACTGTCAACTTTGAGTCCACATATCCGAATATCTATACAAGATATCAAAAATGTGTCAAYTGACAAAATACTTCTGACATTATGATAAACAATTTATTTGTTGACAACTTTTTTGTGTCTTTCACAGGAACTGAGATGAACTGGCTCAAAGATAGGGTGCCTTTCTATTACAGGTTGCTTCTAAAAACCAAAAAATTAGGTCAACTCACCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27393</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>93087</contig_pos>
        <strand></strand>
        <context>tctgacatta[T/A]gataaacaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CTATACAAGATATCAAAAATGTGTCAACTGACAAAATACTTCTGACATTA</left_flank>
        <right_flank>GATAAACAATTTATTTGTTGACAACTTTTTTGTGTCTTTCACAGGAACTG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGATTTTTGATATCTCTTATAGGAACTGAGATAAAGGAGCTTAAAGTGCGAATAAGGTAAGCAAAAGCTCAAACCCTCAAATTTTTTGCTGTCTCATCTTTTTCAATTGAAAATATTTTGGTTCAGGTAAATTTTATCGAAAAACTATCAAGTGACAAAATTTTTATCAACAAATTTCACACATTTTATGTTTGAATTTTACTTCTAATAGACTGTCAGCAAATTTTTTTTGAACATGTTTACCTCAATTTCTGTGAGAGCTATTAAAAAATCGTTAGAAAATAAAATGTTTGATATTTGGTGATAAAAATGTTGTCAGTTAACAATTTTTTGATAGCATTTACCTGAACCAAAATGAAGTTTAAACTTGAAAACCTAAAACTTGAATACTAAAAACCTGTAATAAAAGAGCCCACACTGTCAACTTTGAGTCCACATATCCGAATATCTATACAAGATATCAAAAATGTGTCAACTGACAAAATACTTCTGACATTATGATAAACAATTTATTTGTTGACAACTTTTTTGTGTCTTTCACAGGAACTGAGATGAACTGGCTCAAAGATAGGGTGCCTTTCTATTACAGGTTGCTTCTAAAAACCAAAAAATTAGGTCAACTCACCACTTGAAATTCGAAAAATTATTGAAATCTCCATTCTGCTTGTCTCCCATATTCATGTTTCGCACATTTTTGAATTTTTGAGAAATCATAAATTCTTTTCCCATTTTCAGAATTTTTTTTGAAAATTCAAAAATGATGAGGAAGAAGAATGAAGTGCGGTAAACAATGGAAACCAAATTTACTGATAAGAAAAATGCATTATCAGGAAAAAAAAGGGGAAAAATCACGAGGAGAATTAGAAAACAGGAATTGGAAAACAGGAATTGGTCAAAACTTCTCAAAACTTTTCTACTTTTCTCTTCATTCATTCCTAATATTTTCACACGAACATTCACTTCCAAATTTCCATTATCATCTAGATAATCATTGATTAT</canonical>
            <polymorphic>CAGATTTTTGATATCTCTTATAGGAACTGAGATAAAGGAGCTTAAAGTGCGAATAAGGTAAGCAAAAGCTCAAACCCTCAAATTTTTTGCTGTCTCATCTTTTTCAATTGAAAATATTTTGGTTCAGGTAAATTTTATCGAAAAACTATCAAGTGACAAAATTTTTATCAACAAATTTCACACATTTTATGTTTGAATTTTACTTCTAATAGACTGTCAGCAAATTTTTTTTGAACATGTTTACCTCAATTTCTGTGAGAGCTATTAAAAAATCGTTAGAAAATAAAATGTTTGATATTTGGTGATAAAAATGTTGTCAGTTAACAATTTTTTGATAGCATTTACCTGAACCAAAATGAAGTTTAAACTTGAAAACCTAAAACTTGAATACTAAAAACCTGTAATAAAAGAGCCCACACTGTCAACTTTGAGTCCACATATCCGAATATCTATACAAGATATCAAAAATGTGTCAACTGACAAAATACTTCTGACATTAWGATAAACAATTTATTTGTTGACAACTTTTTTGTGTCTTTCACAGGAACTGAGATGAACTGGCTCAAAGATAGGGTGCCTTTCTATTACAGGTTGCTTCTAAAAACCAAAAAATTAGGTCAACTCACCACTTGAAATTCGAAAAATTATTGAAATCTCCATTCTGCTTGTCTCCCATATTCATGTTTCGCACATTTTTGAATTTTTGAGAAATCATAAATTCTTTTCCCATTTTCAGAATTTTTTTTGAAAATTCAAAAATGATGAGGAAGAAGAATGAAGTGCGGTAAACAATGGAAACCAAATTTACTGATAAGAAAAATGCATTATCAGGAAAAAAAAGGGGAAAAATCACGAGGAGAATTAGAAAACAGGAATTGGAAAACAGGAATTGGTCAAAACTTCTCAAAACTTTTCTACTTTTCTCTTCATTCATTCCTAATATTTTCACACGAACATTCACTTCCAAATTTCCATTATCATCTAGATAATCATTGATTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACACATTTTATGTTTGAATTTTAC</pcr_primer_p1>
		<pcr_primer_p2>AGTGGTGAGTTGACCTAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>452</pcr_amplicon_size>
		<canonical_amplicon>CACACATTTTATGTTTGAATTTTACTTCTAATAGACTGTCAGCAAATTTTTTTTGAACATGTTTACCTCAATTTCTGTGAGAGCTATTAAAAAATCGTTAGAAAATAAAATGTTTGATATTTGGTGATAAAAATGTTGTCAGTTAACAATTTTTTGATAGCATTTACCTGAACCAAAATGAAGTTTAAACTTGAAAACCTAAAACTTGAATACTAAAAACCTGTAATAAAAGAGCCCACACTGTCAACTTTGAGTCCACATATCCGAATATCTATACAAGATATCAAAAATGTGTCAACTGACAAAATACTTCTGACATTATGATAAACAATTTATTTGTTGACAACTTTTTTGTGTCTTTCACAGGAACTGAGATGAACTGGCTCAAAGATAGGGTGCCTTTCTATTACAGGTTGCTTCTAAAAACCAAAAAATTAGGTCAACTCACCACT</canonical_amplicon>
		<polymorphic_amplicon>CACACATTTTATGTTTGAATTTTACTTCTAATAGACTGTCAGCAAATTTTTTTTGAACATGTTTACCTCAATTTCTGTGAGAGCTATTAAAAAATCGTTAGAAAATAAAATGTTTGATATTTGGTGATAAAAATGTTGTCAGTTAACAATTTTTTGATAGCATTTACCTGAACCAAAATGAAGTTTAAACTTGAAAACCTAAAACTTGAATACTAAAAACCTGTAATAAAAGAGCCCACACTGTCAACTTTGAGTCCACATATCCGAATATCTATACAAGATATCAAAAATGTGTCAACTGACAAAATACTTCTGACATTAWGATAAACAATTTATTTGTTGACAACTTTTTTGTGTCTTTCACAGGAACTGAGATGAACTGGCTCAAAGATAGGGTGCCTTTCTATTACAGGTTGCTTCTAAAAACCAAAAAATTAGGTCAACTCACCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27394</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>93103</contig_pos>
        <strand></strand>
        <context>acaatttatt[T/A]gttgacaact</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAATGTGTCAACTGACAAAATACTTCTGACATTATGATAAACAATTTATT</left_flank>
        <right_flank>GTTGACAACTTTTTTGTGTCTTTCACAGGAACTGAGATGAACTGGCTCAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTATAGGAACTGAGATAAAGGAGCTTAAAGTGCGAATAAGGTAAGCAAAAGCTCAAACCCTCAAATTTTTTGCTGTCTCATCTTTTTCAATTGAAAATATTTTGGTTCAGGTAAATTTTATCGAAAAACTATCAAGTGACAAAATTTTTATCAACAAATTTCACACATTTTATGTTTGAATTTTACTTCTAATAGACTGTCAGCAAATTTTTTTTGAACATGTTTACCTCAATTTCTGTGAGAGCTATTAAAAAATCGTTAGAAAATAAAATGTTTGATATTTGGTGATAAAAATGTTGTCAGTTAACAATTTTTTGATAGCATTTACCTGAACCAAAATGAAGTTTAAACTTGAAAACCTAAAACTTGAATACTAAAAACCTGTAATAAAAGAGCCCACACTGTCAACTTTGAGTCCACATATCCGAATATCTATACAAGATATCAAAAATGTGTCAACTGACAAAATACTTCTGACATTATGATAAACAATTTATTTGTTGACAACTTTTTTGTGTCTTTCACAGGAACTGAGATGAACTGGCTCAAAGATAGGGTGCCTTTCTATTACAGGTTGCTTCTAAAAACCAAAAAATTAGGTCAACTCACCACTTGAAATTCGAAAAATTATTGAAATCTCCATTCTGCTTGTCTCCCATATTCATGTTTCGCACATTTTTGAATTTTTGAGAAATCATAAATTCTTTTCCCATTTTCAGAATTTTTTTTGAAAATTCAAAAATGATGAGGAAGAAGAATGAAGTGCGGTAAACAATGGAAACCAAATTTACTGATAAGAAAAATGCATTATCAGGAAAAAAAAGGGGAAAAATCACGAGGAGAATTAGAAAACAGGAATTGGAAAACAGGAATTGGTCAAAACTTCTCAAAACTTTTCTACTTTTCTCTTCATTCATTCCTAATATTTTCACACGAACATTCACTTCCAAATTTCCATTATCATCTAGATAATCATTGATTATTCTTTCCCAAGCGATC</canonical>
            <polymorphic>CTTATAGGAACTGAGATAAAGGAGCTTAAAGTGCGAATAAGGTAAGCAAAAGCTCAAACCCTCAAATTTTTTGCTGTCTCATCTTTTTCAATTGAAAATATTTTGGTTCAGGTAAATTTTATCGAAAAACTATCAAGTGACAAAATTTTTATCAACAAATTTCACACATTTTATGTTTGAATTTTACTTCTAATAGACTGTCAGCAAATTTTTTTTGAACATGTTTACCTCAATTTCTGTGAGAGCTATTAAAAAATCGTTAGAAAATAAAATGTTTGATATTTGGTGATAAAAATGTTGTCAGTTAACAATTTTTTGATAGCATTTACCTGAACCAAAATGAAGTTTAAACTTGAAAACCTAAAACTTGAATACTAAAAACCTGTAATAAAAGAGCCCACACTGTCAACTTTGAGTCCACATATCCGAATATCTATACAAGATATCAAAAATGTGTCAACTGACAAAATACTTCTGACATTATGATAAACAATTTATTWGTTGACAACTTTTTTGTGTCTTTCACAGGAACTGAGATGAACTGGCTCAAAGATAGGGTGCCTTTCTATTACAGGTTGCTTCTAAAAACCAAAAAATTAGGTCAACTCACCACTTGAAATTCGAAAAATTATTGAAATCTCCATTCTGCTTGTCTCCCATATTCATGTTTCGCACATTTTTGAATTTTTGAGAAATCATAAATTCTTTTCCCATTTTCAGAATTTTTTTTGAAAATTCAAAAATGATGAGGAAGAAGAATGAAGTGCGGTAAACAATGGAAACCAAATTTACTGATAAGAAAAATGCATTATCAGGAAAAAAAAGGGGAAAAATCACGAGGAGAATTAGAAAACAGGAATTGGAAAACAGGAATTGGTCAAAACTTCTCAAAACTTTTCTACTTTTCTCTTCATTCATTCCTAATATTTTCACACGAACATTCACTTCCAAATTTCCATTATCATCTAGATAATCATTGATTATTCTTTCCCAAGCGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACACATTTTATGTTTGAATTTTAC</pcr_primer_p1>
		<pcr_primer_p2>AGTGGTGAGTTGACCTAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>452</pcr_amplicon_size>
		<canonical_amplicon>CACACATTTTATGTTTGAATTTTACTTCTAATAGACTGTCAGCAAATTTTTTTTGAACATGTTTACCTCAATTTCTGTGAGAGCTATTAAAAAATCGTTAGAAAATAAAATGTTTGATATTTGGTGATAAAAATGTTGTCAGTTAACAATTTTTTGATAGCATTTACCTGAACCAAAATGAAGTTTAAACTTGAAAACCTAAAACTTGAATACTAAAAACCTGTAATAAAAGAGCCCACACTGTCAACTTTGAGTCCACATATCCGAATATCTATACAAGATATCAAAAATGTGTCAACTGACAAAATACTTCTGACATTATGATAAACAATTTATTTGTTGACAACTTTTTTGTGTCTTTCACAGGAACTGAGATGAACTGGCTCAAAGATAGGGTGCCTTTCTATTACAGGTTGCTTCTAAAAACCAAAAAATTAGGTCAACTCACCACT</canonical_amplicon>
		<polymorphic_amplicon>CACACATTTTATGTTTGAATTTTACTTCTAATAGACTGTCAGCAAATTTTTTTTGAACATGTTTACCTCAATTTCTGTGAGAGCTATTAAAAAATCGTTAGAAAATAAAATGTTTGATATTTGGTGATAAAAATGTTGTCAGTTAACAATTTTTTGATAGCATTTACCTGAACCAAAATGAAGTTTAAACTTGAAAACCTAAAACTTGAATACTAAAAACCTGTAATAAAAGAGCCCACACTGTCAACTTTGAGTCCACATATCCGAATATCTATACAAGATATCAAAAATGTGTCAACTGACAAAATACTTCTGACATTATGATAAACAATTTATTWGTTGACAACTTTTTTGTGTCTTTCACAGGAACTGAGATGAACTGGCTCAAAGATAGGGTGCCTTTCTATTACAGGTTGCTTCTAAAAACCAAAAAATTAGGTCAACTCACCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27395</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>93233</contig_pos>
        <strand></strand>
        <context>TTCGAAAAAT[T/C]ATTGAAATCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCTAAAAACCAAAAAATTAGGTCAACTCACCACTTGAAATTCGAAAAAT</left_flank>
        <right_flank>ATTGAAATCTCCATTCTGCTTGTCTCCCATATTCATGTTTCGCACATTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCAAGTGACAAAATTTTTATCAACAAATTTCACACATTTTATGTTTGAATTTTACTTCTAATAGACTGTCAGCAAATTTTTTTTGAACATGTTTACCTCAATTTCTGTGAGAGCTATTAAAAAATCGTTAGAAAATAAAATGTTTGATATTTGGTGATAAAAATGTTGTCAGTTAACAATTTTTTGATAGCATTTACCTGAACCAAAATGAAGTTTAAACTTGAAAACCTAAAACTTGAATACTAAAAACCTGTAATAAAAGAGCCCACACTGTCAACTTTGAGTCCACATATCCGAATATCTATACAAGATATCAAAAATGTGTCAACTGACAAAATACTTCTGACATTATGATAAACAATTTATTTGTTGACAACTTTTTTGTGTCTTTCACAGGAACTGAGATGAACTGGCTCAAAGATAGGGTGCCTTTCTATTACAGGTTGCTTCTAAAAACCAAAAAATTAGGTCAACTCACCACTTGAAATTCGAAAAATTATTGAAATCTCCATTCTGCTTGTCTCCCATATTCATGTTTCGCACATTTTTGAATTTTTGAGAAATCATAAATTCTTTTCCCATTTTCAGAATTTTTTTTGAAAATTCAAAAATGATGAGGAAGAAGAATGAAGTGCGGTAAACAATGGAAACCAAATTTACTGATAAGAAAAATGCATTATCAGGAAAAAAAAGGGGAAAAATCACGAGGAGAATTAGAAAACAGGAATTGGAAAACAGGAATTGGTCAAAACTTCTCAAAACTTTTCTACTTTTCTCTTCATTCATTCCTAATATTTTCACACGAACATTCACTTCCAAATTTCCATTATCATCTAGATAATCATTGATTATTCTTTCCCAAGCGATCTTTTCCGGATGTCCTTCGAATTCACATTGTCCAGTTTTGAAAATTCGCATTTTTCCAGATGTTGATAACACTTTTCCGCAGTCAGAAGTAATAATGTATTCGAATTCAGCTTGAAGTTCATGGCCAGTTT</canonical>
            <polymorphic>TATCAAGTGACAAAATTTTTATCAACAAATTTCACACATTTTATGTTTGAATTTTACTTCTAATAGACTGTCAGCAAATTTTTTTTGAACATGTTTACCTCAATTTCTGTGAGAGCTATTAAAAAATCGTTAGAAAATAAAATGTTTGATATTTGGTGATAAAAATGTTGTCAGTTAACAATTTTTTGATAGCATTTACCTGAACCAAAATGAAGTTTAAACTTGAAAACCTAAAACTTGAATACTAAAAACCTGTAATAAAAGAGCCCACACTGTCAACTTTGAGTCCACATATCCGAATATCTATACAAGATATCAAAAATGTGTCAACTGACAAAATACTTCTGACATTATGATAAACAATTTATTTGTTGACAACTTTTTTGTGTCTTTCACAGGAACTGAGATGAACTGGCTCAAAGATAGGGTGCCTTTCTATTACAGGTTGCTTCTAAAAACCAAAAAATTAGGTCAACTCACCACTTGAAATTCGAAAAATYATTGAAATCTCCATTCTGCTTGTCTCCCATATTCATGTTTCGCACATTTTTGAATTTTTGAGAAATCATAAATTCTTTTCCCATTTTCAGAATTTTTTTTGAAAATTCAAAAATGATGAGGAAGAAGAATGAAGTGCGGTAAACAATGGAAACCAAATTTACTGATAAGAAAAATGCATTATCAGGAAAAAAAAGGGGAAAAATCACGAGGAGAATTAGAAAACAGGAATTGGAAAACAGGAATTGGTCAAAACTTCTCAAAACTTTTCTACTTTTCTCTTCATTCATTCCTAATATTTTCACACGAACATTCACTTCCAAATTTCCATTATCATCTAGATAATCATTGATTATTCTTTCCCAAGCGATCTTTTCCGGATGTCCTTCGAATTCACATTGTCCAGTTTTGAAAATTCGCATTTTTCCAGATGTTGATAACACTTTTCCGCAGTCAGAAGTAATAATGTATTCGAATTCAGCTTGAAGTTCATGGCCAGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>182 103 79 78 68 61 58 56 52 28 27 25 23 23 22 20 18 14 14 14 13 13 9</canonical_bands>
                <polymorphic_bands>182 103 79 78 68 65 61 58 52 28 27 25 23 23 22 20 18 14 14 14 13 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTATCAACAAATTTCACACA</pcr_primer_p1>
		<pcr_primer_p2>GATTTCTCAAAAATTCAAAAATGT</pcr_primer_p2>
		<pcr_amplicon_size>552</pcr_amplicon_size>
		<canonical_amplicon>TTTTTATCAACAAATTTCACACATTTTATGTTTGAATTTTACTTCTAATAGACTGTCAGCAAATTTTTTTTGAACATGTTTACCTCAATTTCTGTGAGAGCTATTAAAAAATCGTTAGAAAATAAAATGTTTGATATTTGGTGATAAAAATGTTGTCAGTTAACAATTTTTTGATAGCATTTACCTGAACCAAAATGAAGTTTAAACTTGAAAACCTAAAACTTGAATACTAAAAACCTGTAATAAAAGAGCCCACACTGTCAACTTTGAGTCCACATATCCGAATATCTATACAAGATATCAAAAATGTGTCAACTGACAAAATACTTCTGACATTATGATAAACAATTTATTTGTTGACAACTTTTTTGTGTCTTTCACAGGAACTGAGATGAACTGGCTCAAAGATAGGGTGCCTTTCTATTACAGGTTGCTTCTAAAAACCAAAAAATTAGGTCAACTCACCACTTGAAATTCGAAAAATTATTGAAATCTCCATTCTGCTTGTCTCCCATATTCATGTTTCGCACATTTTTGAATTTTTGAGAAATC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTATCAACAAATTTCACACATTTTATGTTTGAATTTTACTTCTAATAGACTGTCAGCAAATTTTTTTTGAACATGTTTACCTCAATTTCTGTGAGAGCTATTAAAAAATCGTTAGAAAATAAAATGTTTGATATTTGGTGATAAAAATGTTGTCAGTTAACAATTTTTTGATAGCATTTACCTGAACCAAAATGAAGTTTAAACTTGAAAACCTAAAACTTGAATACTAAAAACCTGTAATAAAAGAGCCCACACTGTCAACTTTGAGTCCACATATCCGAATATCTATACAAGATATCAAAAATGTGTCAACTGACAAAATACTTCTGACATTATGATAAACAATTTATTTGTTGACAACTTTTTTGTGTCTTTCACAGGAACTGAGATGAACTGGCTCAAAGATAGGGTGCCTTTCTATTACAGGTTGCTTCTAAAAACCAAAAAATTAGGTCAACTCACCACTTGAAATTCGAAAAATYATTGAAATCTCCATTCTGCTTGTCTCCCATATTCATGTTTCGCACATTTTTGAATTTTTGAGAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27396</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>93255</contig_pos>
        <strand></strand>
        <context>CATTCTGCTT[G/T]TCTCCCATAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCAACTCACCACTTGAAATTCGAAAAATTATTGAAATCTCCATTCTGCTT</left_flank>
        <right_flank>TCTCCCATATTCATGTTTCGCACATTTTTGAATTTTTGAGAAATCATAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACAAATTTCACACATTTTATGTTTGAATTTTACTTCTAATAGACTGTCAGCAAATTTTTTTTGAACATGTTTACCTCAATTTCTGTGAGAGCTATTAAAAAATCGTTAGAAAATAAAATGTTTGATATTTGGTGATAAAAATGTTGTCAGTTAACAATTTTTTGATAGCATTTACCTGAACCAAAATGAAGTTTAAACTTGAAAACCTAAAACTTGAATACTAAAAACCTGTAATAAAAGAGCCCACACTGTCAACTTTGAGTCCACATATCCGAATATCTATACAAGATATCAAAAATGTGTCAACTGACAAAATACTTCTGACATTATGATAAACAATTTATTTGTTGACAACTTTTTTGTGTCTTTCACAGGAACTGAGATGAACTGGCTCAAAGATAGGGTGCCTTTCTATTACAGGTTGCTTCTAAAAACCAAAAAATTAGGTCAACTCACCACTTGAAATTCGAAAAATTATTGAAATCTCCATTCTGCTTGTCTCCCATATTCATGTTTCGCACATTTTTGAATTTTTGAGAAATCATAAATTCTTTTCCCATTTTCAGAATTTTTTTTGAAAATTCAAAAATGATGAGGAAGAAGAATGAAGTGCGGTAAACAATGGAAACCAAATTTACTGATAAGAAAAATGCATTATCAGGAAAAAAAAGGGGAAAAATCACGAGGAGAATTAGAAAACAGGAATTGGAAAACAGGAATTGGTCAAAACTTCTCAAAACTTTTCTACTTTTCTCTTCATTCATTCCTAATATTTTCACACGAACATTCACTTCCAAATTTCCATTATCATCTAGATAATCATTGATTATTCTTTCCCAAGCGATCTTTTCCGGATGTCCTTCGAATTCACATTGTCCAGTTTTGAAAATTCGCATTTTTCCAGATGTTGATAACACTTTTCCGCAGTCAGAAGTAATAATGTATTCGAATTCAGCTTGAAGTTCATGGCCAGTTTTATGTGGAGGTATCACACAGAG</canonical>
            <polymorphic>CAACAAATTTCACACATTTTATGTTTGAATTTTACTTCTAATAGACTGTCAGCAAATTTTTTTTGAACATGTTTACCTCAATTTCTGTGAGAGCTATTAAAAAATCGTTAGAAAATAAAATGTTTGATATTTGGTGATAAAAATGTTGTCAGTTAACAATTTTTTGATAGCATTTACCTGAACCAAAATGAAGTTTAAACTTGAAAACCTAAAACTTGAATACTAAAAACCTGTAATAAAAGAGCCCACACTGTCAACTTTGAGTCCACATATCCGAATATCTATACAAGATATCAAAAATGTGTCAACTGACAAAATACTTCTGACATTATGATAAACAATTTATTTGTTGACAACTTTTTTGTGTCTTTCACAGGAACTGAGATGAACTGGCTCAAAGATAGGGTGCCTTTCTATTACAGGTTGCTTCTAAAAACCAAAAAATTAGGTCAACTCACCACTTGAAATTCGAAAAATTATTGAAATCTCCATTCTGCTTKTCTCCCATATTCATGTTTCGCACATTTTTGAATTTTTGAGAAATCATAAATTCTTTTCCCATTTTCAGAATTTTTTTTGAAAATTCAAAAATGATGAGGAAGAAGAATGAAGTGCGGTAAACAATGGAAACCAAATTTACTGATAAGAAAAATGCATTATCAGGAAAAAAAAGGGGAAAAATCACGAGGAGAATTAGAAAACAGGAATTGGAAAACAGGAATTGGTCAAAACTTCTCAAAACTTTTCTACTTTTCTCTTCATTCATTCCTAATATTTTCACACGAACATTCACTTCCAAATTTCCATTATCATCTAGATAATCATTGATTATTCTTTCCCAAGCGATCTTTTCCGGATGTCCTTCGAATTCACATTGTCCAGTTTTGAAAATTCGCATTTTTCCAGATGTTGATAACACTTTTCCGCAGTCAGAAGTAATAATGTATTCGAATTCAGCTTGAAGTTCATGGCCAGTTTTATGTGGAGGTATCACACAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGGTCAACTCACCACTTGAA</pcr_primer_p1>
		<pcr_primer_p2>TCTAATTCTCCTCGTGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TAGGTCAACTCACCACTTGAAATTCGAAAAATTATTGAAATCTCCATTCTGCTTGTCTCCCATATTCATGTTTCGCACATTTTTGAATTTTTGAGAAATCATAAATTCTTTTCCCATTTTCAGAATTTTTTTTGAAAATTCAAAAATGATGAGGAAGAAGAATGAAGTGCGGTAAACAATGGAAACCAAATTTACTGATAAGAAAAATGCATTATCAGGAAAAAAAAGGGGAAAAATCACGAGGAGAATTAGA</canonical_amplicon>
		<polymorphic_amplicon>TAGGTCAACTCACCACTTGAAATTCGAAAAATTATTGAAATCTCCATTCTGCTTKTCTCCCATATTCATGTTTCGCACATTTTTGAATTTTTGAGAAATCATAAATTCTTTTCCCATTTTCAGAATTTTTTTTGAAAATTCAAAAATGATGAGGAAGAAGAATGAAGTGCGGTAAACAATGGAAACCAAATTTACTGATAAGAAAAATGCATTATCAGGAAAAAAAAGGGGAAAAATCACGAGGAGAATTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27397</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>93323</contig_pos>
        <strand></strand>
        <context>CCCATTTTCA[G/A]AATTTTTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCGCACATTTTTGAATTTTTGAGAAATCATAAATTCTTTTCCCATTTTCA</left_flank>
        <right_flank>AATTTTTTTTGAAAATTCAAAAATGATGAGGAAGAAGAATGAAGTGCGGT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTTTACCTCAATTTCTGTGAGAGCTATTAAAAAATCGTTAGAAAATAAAATGTTTGATATTTGGTGATAAAAATGTTGTCAGTTAACAATTTTTTGATAGCATTTACCTGAACCAAAATGAAGTTTAAACTTGAAAACCTAAAACTTGAATACTAAAAACCTGTAATAAAAGAGCCCACACTGTCAACTTTGAGTCCACATATCCGAATATCTATACAAGATATCAAAAATGTGTCAACTGACAAAATACTTCTGACATTATGATAAACAATTTATTTGTTGACAACTTTTTTGTGTCTTTCACAGGAACTGAGATGAACTGGCTCAAAGATAGGGTGCCTTTCTATTACAGGTTGCTTCTAAAAACCAAAAAATTAGGTCAACTCACCACTTGAAATTCGAAAAATTATTGAAATCTCCATTCTGCTTGTCTCCCATATTCATGTTTCGCACATTTTTGAATTTTTGAGAAATCATAAATTCTTTTCCCATTTTCAGAATTTTTTTTGAAAATTCAAAAATGATGAGGAAGAAGAATGAAGTGCGGTAAACAATGGAAACCAAATTTACTGATAAGAAAAATGCATTATCAGGAAAAAAAAGGGGAAAAATCACGAGGAGAATTAGAAAACAGGAATTGGAAAACAGGAATTGGTCAAAACTTCTCAAAACTTTTCTACTTTTCTCTTCATTCATTCCTAATATTTTCACACGAACATTCACTTCCAAATTTCCATTATCATCTAGATAATCATTGATTATTCTTTCCCAAGCGATCTTTTCCGGATGTCCTTCGAATTCACATTGTCCAGTTTTGAAAATTCGCATTTTTCCAGATGTTGATAACACTTTTCCGCAGTCAGAAGTAATAATGTATTCGAATTCAGCTTGAAGTTCATGGCCAGTTTTATGTGGAGGTATCACACAGAGAAAGAGCTTCAGATAACGACTTCTTTGAAGACCCACGTACCTGGAATGGGAAAATTCTGGAATGTTCA</canonical>
            <polymorphic>ATGTTTACCTCAATTTCTGTGAGAGCTATTAAAAAATCGTTAGAAAATAAAATGTTTGATATTTGGTGATAAAAATGTTGTCAGTTAACAATTTTTTGATAGCATTTACCTGAACCAAAATGAAGTTTAAACTTGAAAACCTAAAACTTGAATACTAAAAACCTGTAATAAAAGAGCCCACACTGTCAACTTTGAGTCCACATATCCGAATATCTATACAAGATATCAAAAATGTGTCAACTGACAAAATACTTCTGACATTATGATAAACAATTTATTTGTTGACAACTTTTTTGTGTCTTTCACAGGAACTGAGATGAACTGGCTCAAAGATAGGGTGCCTTTCTATTACAGGTTGCTTCTAAAAACCAAAAAATTAGGTCAACTCACCACTTGAAATTCGAAAAATTATTGAAATCTCCATTCTGCTTGTCTCCCATATTCATGTTTCGCACATTTTTGAATTTTTGAGAAATCATAAATTCTTTTCCCATTTTCARAATTTTTTTTGAAAATTCAAAAATGATGAGGAAGAAGAATGAAGTGCGGTAAACAATGGAAACCAAATTTACTGATAAGAAAAATGCATTATCAGGAAAAAAAAGGGGAAAAATCACGAGGAGAATTAGAAAACAGGAATTGGAAAACAGGAATTGGTCAAAACTTCTCAAAACTTTTCTACTTTTCTCTTCATTCATTCCTAATATTTTCACACGAACATTCACTTCCAAATTTCCATTATCATCTAGATAATCATTGATTATTCTTTCCCAAGCGATCTTTTCCGGATGTCCTTCGAATTCACATTGTCCAGTTTTGAAAATTCGCATTTTTCCAGATGTTGATAACACTTTTCCGCAGTCAGAAGTAATAATGTATTCGAATTCAGCTTGAAGTTCATGGCCAGTTTTATGTGGAGGTATCACACAGAGAAAGAGCTTCAGATAACGACTTCTTTGAAGACCCACGTACCTGGAATGGGAAAATTCTGGAATGTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>397 165 102 68 65 61 52 23 20 18 16 13</canonical_bands>
                <polymorphic_bands>397 165 102 68 65 61 52 33 23 18 16</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>365 243 207 79 57 49</canonical_bands>
                <polymorphic_bands>608 207 79 57 49</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCACTTGAAATTCGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATTCCTGTTTTCTAATTCTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACCACTTGAAATTCGAAAAATTATTGAAATCTCCATTCTGCTTGTCTCCCATATTCATGTTTCGCACATTTTTGAATTTTTGAGAAATCATAAATTCTTTTCCCATTTTCAGAATTTTTTTTGAAAATTCAAAAATGATGAGGAAGAAGAATGAAGTGCGGTAAACAATGGAAACCAAATTTACTGATAAGAAAAATGCATTATCAGGAAAAAAAAGGGGAAAAATCACGAGGAGAATTAGAAAACAGGAAT</canonical_amplicon>
		<polymorphic_amplicon>ACCACTTGAAATTCGAAAAATTATTGAAATCTCCATTCTGCTTGTCTCCCATATTCATGTTTCGCACATTTTTGAATTTTTGAGAAATCATAAATTCTTTTCCCATTTTCARAATTTTTTTTGAAAATTCAAAAATGATGAGGAAGAAGAATGAAGTGCGGTAAACAATGGAAACCAAATTTACTGATAAGAAAAATGCATTATCAGGAAAAAAAAGGGGAAAAATCACGAGGAGAATTAGAAAACAGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27398</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>99131</contig_pos>
        <strand>+</strand>
        <context>GGATAGAAAG[A/G]AAAATGTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCACGAGGAGAATTAGAAAACAGGAATTGGTTGGGTCATTGGATAGAAAG</left_flank>
        <right_flank>AAAATGTTCAAACAAGAGTTAAAACCTTCTGAAAAAGAGCAGCAAGAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGTTCAACTGATAAATTATACATCATAATATCACCTATTTTTACAGATTTTTAATATCTCTTATAGGAATCGAGATAATTTAGCCCAACGTATATGTAAAGAGTGGTTACGGTCTTTGTTTAGTTTCCTTATAAGCTCAGTTATCTCGGTTCCTATAGGAGATATCAAAAAACTTTTAGTTGATAATTTTGTTATCGTAATCTCACCAATATATTATCAGTTGACAGATTTTTGATATCTCTTATAGGAACTGAGATAAAGGAGCTTAAAGTGCGAATAAGGTAAGCAAAAGCTCAAACCCTCAAATTTTTTGCTGTCTCATCTTTTTCAATTGAAAATATTTTGGTTCAGGTAAATTTTATCGAAGAAGAATGAAGTGCGGTAAACAATGGAAACCAAATTTACTGATAAGAAAAATGCATTATCAGGAAAAAAAAGGGGAAAAATCACGAGGAGAATTAGAAAACAGGAATTGGTTGGGTCATTGGATAGAAAGAAAAATGTTCAAACAAGAGTTAAAACCTTCTGAAAAAGAGCAGCAAGAATCAAATGGTCCATTTCTCTAGGATTCTTCAGAGCCACTAAACGAATATCAGATACTGTTCGAATCCGAGAGACGCAGCTTTTCTGAAAAAATCATATTGCTCGTTTCTATTCAAAAAAGCACCAAACTCACTCTCAACGCGTCCAATTGATATTTTCCAGCCATTTCCAGTTTGTCTTTCAACGATTTTGTCGATTTCTCCAAAAGATATTCTTCACATTTTTTGATGATAGTAGGGGTGTTGTACAAATCAGCAATTGATAAGATTCCCTCAACGGTTTCTTCTGGAAAATTCTGAGGATTACGGTAGAGATGAGAGGTACAGTAACCCACCATCTGGTCCAGGTTCTCCGTAAAGGAGTTCCAGGAAGTATTGGAAGTTTTGAGGATTTGAATTTGAAAGTTTGATTTCCGATTTTCCAGAATTTTCGGAGAAGAGATTAGCAAAGTAGG</canonical>
            <polymorphic>AAATGTTCAACTGATAAATTATACATCATAATATCACCTATTTTTACAGATTTTTAATATCTCTTATAGGAATCGAGATAATTTAGCCCAACGTATATGTAAAGAGTGGTTACGGTCTTTGTTTAGTTTCCTTATAAGCTCAGTTATCTCGGTTCCTATAGGAGATATCAAAAAACTTTTAGTTGATAATTTTGTTATCGTAATCTCACCAATATATTATCAGTTGACAGATTTTTGATATCTCTTATAGGAACTGAGATAAAGGAGCTTAAAGTGCGAATAAGGTAAGCAAAAGCTCAAACCCTCAAATTTTTTGCTGTCTCATCTTTTTCAATTGAAAATATTTTGGTTCAGGTAAATTTTATCGAAGAAGAATGAAGTGCGGTAAACAATGGAAACCAAATTTACTGATAAGAAAAATGCATTATCAGGAAAAAAAAGGGGAAAAATCACGAGGAGAATTAGAAAACAGGAATTGGTTGGGTCATTGGATAGAAAGRAAAATGTTCAAACAAGAGTTAAAACCTTCTGAAAAAGAGCAGCAAGAATCAAATGGTCCATTTCTCTAGGATTCTTCAGAGCCACTAAACGAATATCAGATACTGTTCGAATCCGAGAGACGCAGCTTTTCTGAAAAAATCATATTGCTCGTTTCTATTCAAAAAAGCACCAAACTCACTCTCAACGCGTCCAATTGATATTTTCCAGCCATTTCCAGTTTGTCTTTCAACGATTTTGTCGATTTCTCCAAAAGATATTCTTCACATTTTTTGATGATAGTAGGGGTGTTGTACAAATCAGCAATTGATAAGATTCCCTCAACGGTTTCTTCTGGAAAATTCTGAGGATTACGGTAGAGATGAGAGGTACAGTAACCCACCATCTGGTCCAGGTTCTCCGTAAAGGAGTTCCAGGAAGTATTGGAAGTTTTGAGGATTTGAATTTGAAAGTTTGATTTCCGATTTTCCAGAATTTTCGGAGAAGAGATTAGCAAAGTAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGCATTATCAGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAATAGAAACGAGCAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGCATTATCAGGAAAAAAAAGGGGAAAAATCACGAGGAGAATTAGAAAACAGGAATTGGTTGGGTCATTGGATAGAAAGAAAAATGTTCAAACAAGAGTTAAAACCTTCTGAAAAAGAGCAGCAAGAATCAAATGGTCCATTTCTCTAGGATTCTTCAGAGCCACTAAACGAATATCAGATACTGTTCGAATCCGAGAGACGCAGCTTTTCTGAAAAAATCATATTGCTCGTTTCTATTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGCATTATCAGGAAAAAAAAGGGGAAAAATCACGAGGAGAATTAGAAAACAGGAATTGGTTGGGTCATTGGATAGAAAGRAAAATGTTCAAACAAGAGTTAAAACCTTCTGAAAAAGAGCAGCAAGAATCAAATGGTCCATTTCTCTAGGATTCTTCAGAGCCACTAAACGAATATCAGATACTGTTCGAATCCGAGAGACGCAGCTTTTCTGAAAAAATCATATTGCTCGTTTCTATTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27399</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>99218</contig_pos>
        <strand>+</strand>
        <context>CAGAGCCACT[A/G]AACGAATATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGCAGCAAGAATCAAATGGTCCATTTCTCTAGGATTCTTCAGAGCCACT</left_flank>
        <right_flank>AACGAATATCAGATACTGTTCGAATCCGAGAGACGCAGCTTTTCTGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAACGTATATGTAAAGAGTGGTTACGGTCTTTGTTTAGTTTCCTTATAAGCTCAGTTATCTCGGTTCCTATAGGAGATATCAAAAAACTTTTAGTTGATAATTTTGTTATCGTAATCTCACCAATATATTATCAGTTGACAGATTTTTGATATCTCTTATAGGAACTGAGATAAAGGAGCTTAAAGTGCGAATAAGGTAAGCAAAAGCTCAAACCCTCAAATTTTTTGCTGTCTCATCTTTTTCAATTGAAAATATTTTGGTTCAGGTAAATTTTATCGAAGAAGAATGAAGTGCGGTAAACAATGGAAACCAAATTTACTGATAAGAAAAATGCATTATCAGGAAAAAAAAGGGGAAAAATCACGAGGAGAATTAGAAAACAGGAATTGGTTGGGTCATTGGATAGAAAGAAAAATGTTCAAACAAGAGTTAAAACCTTCTGAAAAAGAGCAGCAAGAATCAAATGGTCCATTTCTCTAGGATTCTTCAGAGCCACTAAACGAATATCAGATACTGTTCGAATCCGAGAGACGCAGCTTTTCTGAAAAAATCATATTGCTCGTTTCTATTCAAAAAAGCACCAAACTCACTCTCAACGCGTCCAATTGATATTTTCCAGCCATTTCCAGTTTGTCTTTCAACGATTTTGTCGATTTCTCCAAAAGATATTCTTCACATTTTTTGATGATAGTAGGGGTGTTGTACAAATCAGCAATTGATAAGATTCCCTCAACGGTTTCTTCTGGAAAATTCTGAGGATTACGGTAGAGATGAGAGGTACAGTAACCCACCATCTGGTCCAGGTTCTCCGTAAAGGAGTTCCAGGAAGTATTGGAAGTTTTGAGGATTTGAATTTGAAAGTTTGATTTCCGATTTTCCAGAATTTTCGGAGAAGAGATTAGCAAAGTAGGGGGATTGGGAAGAGAGGAACTGAAAACTTGAGATTATAAACTACAAACTACAAAAAAAAACTCACCAATTTTGAAACATAAAACTTT</canonical>
            <polymorphic>CCAACGTATATGTAAAGAGTGGTTACGGTCTTTGTTTAGTTTCCTTATAAGCTCAGTTATCTCGGTTCCTATAGGAGATATCAAAAAACTTTTAGTTGATAATTTTGTTATCGTAATCTCACCAATATATTATCAGTTGACAGATTTTTGATATCTCTTATAGGAACTGAGATAAAGGAGCTTAAAGTGCGAATAAGGTAAGCAAAAGCTCAAACCCTCAAATTTTTTGCTGTCTCATCTTTTTCAATTGAAAATATTTTGGTTCAGGTAAATTTTATCGAAGAAGAATGAAGTGCGGTAAACAATGGAAACCAAATTTACTGATAAGAAAAATGCATTATCAGGAAAAAAAAGGGGAAAAATCACGAGGAGAATTAGAAAACAGGAATTGGTTGGGTCATTGGATAGAAAGAAAAATGTTCAAACAAGAGTTAAAACCTTCTGAAAAAGAGCAGCAAGAATCAAATGGTCCATTTCTCTAGGATTCTTCAGAGCCACTRAACGAATATCAGATACTGTTCGAATCCGAGAGACGCAGCTTTTCTGAAAAAATCATATTGCTCGTTTCTATTCAAAAAAGCACCAAACTCACTCTCAACGCGTCCAATTGATATTTTCCAGCCATTTCCAGTTTGTCTTTCAACGATTTTGTCGATTTCTCCAAAAGATATTCTTCACATTTTTTGATGATAGTAGGGGTGTTGTACAAATCAGCAATTGATAAGATTCCCTCAACGGTTTCTTCTGGAAAATTCTGAGGATTACGGTAGAGATGAGAGGTACAGTAACCCACCATCTGGTCCAGGTTCTCCGTAAAGGAGTTCCAGGAAGTATTGGAAGTTTTGAGGATTTGAATTTGAAAGTTTGATTTCCGATTTTCCAGAATTTTCGGAGAAGAGATTAGCAAAGTAGGGGGATTGGGAAGAGAGGAACTGAAAACTTGAGATTATAAACTACAAACTACAAAAAAAAACTCACCAATTTTGAAACATAAAACTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGCATTATCAGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAATAGAAACGAGCAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGCATTATCAGGAAAAAAAAGGGGAAAAATCACGAGGAGAATTAGAAAACAGGAATTGGTTGGGTCATTGGATAGAAAGAAAAATGTTCAAACAAGAGTTAAAACCTTCTGAAAAAGAGCAGCAAGAATCAAATGGTCCATTTCTCTAGGATTCTTCAGAGCCACTAAACGAATATCAGATACTGTTCGAATCCGAGAGACGCAGCTTTTCTGAAAAAATCATATTGCTCGTTTCTATTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGCATTATCAGGAAAAAAAAGGGGAAAAATCACGAGGAGAATTAGAAAACAGGAATTGGTTGGGTCATTGGATAGAAAGAAAAATGTTCAAACAAGAGTTAAAACCTTCTGAAAAAGAGCAGCAAGAATCAAATGGTCCATTTCTCTAGGATTCTTCAGAGCCACTRAACGAATATCAGATACTGTTCGAATCCGAGAGACGCAGCTTTTCTGAAAAAATCATATTGCTCGTTTCTATTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27400</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>99264</contig_pos>
        <strand>+</strand>
        <context>CAGCTTTTCT[C/G]AAAAAATCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CACTAAACGAATATCAGATACTGTTCGAATCCGAGAGACGCAGCTTTTCT</left_flank>
        <right_flank>AAAAAATCATATTGCTCGTTTCTATTCAAAAAAGCACCAAACTCACTCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAGCTCAGTTATCTCGGTTCCTATAGGAGATATCAAAAAACTTTTAGTTGATAATTTTGTTATCGTAATCTCACCAATATATTATCAGTTGACAGATTTTTGATATCTCTTATAGGAACTGAGATAAAGGAGCTTAAAGTGCGAATAAGGTAAGCAAAAGCTCAAACCCTCAAATTTTTTGCTGTCTCATCTTTTTCAATTGAAAATATTTTGGTTCAGGTAAATTTTATCGAAGAAGAATGAAGTGCGGTAAACAATGGAAACCAAATTTACTGATAAGAAAAATGCATTATCAGGAAAAAAAAGGGGAAAAATCACGAGGAGAATTAGAAAACAGGAATTGGTTGGGTCATTGGATAGAAAGAAAAATGTTCAAACAAGAGTTAAAACCTTCTGAAAAAGAGCAGCAAGAATCAAATGGTCCATTTCTCTAGGATTCTTCAGAGCCACTAAACGAATATCAGATACTGTTCGAATCCGAGAGACGCAGCTTTTCTGAAAAAATCATATTGCTCGTTTCTATTCAAAAAAGCACCAAACTCACTCTCAACGCGTCCAATTGATATTTTCCAGCCATTTCCAGTTTGTCTTTCAACGATTTTGTCGATTTCTCCAAAAGATATTCTTCACATTTTTTGATGATAGTAGGGGTGTTGTACAAATCAGCAATTGATAAGATTCCCTCAACGGTTTCTTCTGGAAAATTCTGAGGATTACGGTAGAGATGAGAGGTACAGTAACCCACCATCTGGTCCAGGTTCTCCGTAAAGGAGTTCCAGGAAGTATTGGAAGTTTTGAGGATTTGAATTTGAAAGTTTGATTTCCGATTTTCCAGAATTTTCGGAGAAGAGATTAGCAAAGTAGGGGGATTGGGAAGAGAGGAACTGAAAACTTGAGATTATAAACTACAAACTACAAAAAAAAACTCACCAATTTTGAAACATAAAACTTTTGTTCACCAATCACAAGAGCAACATCCGAGAATTGTTTCTCTTCAA</canonical>
            <polymorphic>ATAAGCTCAGTTATCTCGGTTCCTATAGGAGATATCAAAAAACTTTTAGTTGATAATTTTGTTATCGTAATCTCACCAATATATTATCAGTTGACAGATTTTTGATATCTCTTATAGGAACTGAGATAAAGGAGCTTAAAGTGCGAATAAGGTAAGCAAAAGCTCAAACCCTCAAATTTTTTGCTGTCTCATCTTTTTCAATTGAAAATATTTTGGTTCAGGTAAATTTTATCGAAGAAGAATGAAGTGCGGTAAACAATGGAAACCAAATTTACTGATAAGAAAAATGCATTATCAGGAAAAAAAAGGGGAAAAATCACGAGGAGAATTAGAAAACAGGAATTGGTTGGGTCATTGGATAGAAAGAAAAATGTTCAAACAAGAGTTAAAACCTTCTGAAAAAGAGCAGCAAGAATCAAATGGTCCATTTCTCTAGGATTCTTCAGAGCCACTAAACGAATATCAGATACTGTTCGAATCCGAGAGACGCAGCTTTTCTSAAAAAATCATATTGCTCGTTTCTATTCAAAAAAGCACCAAACTCACTCTCAACGCGTCCAATTGATATTTTCCAGCCATTTCCAGTTTGTCTTTCAACGATTTTGTCGATTTCTCCAAAAGATATTCTTCACATTTTTTGATGATAGTAGGGGTGTTGTACAAATCAGCAATTGATAAGATTCCCTCAACGGTTTCTTCTGGAAAATTCTGAGGATTACGGTAGAGATGAGAGGTACAGTAACCCACCATCTGGTCCAGGTTCTCCGTAAAGGAGTTCCAGGAAGTATTGGAAGTTTTGAGGATTTGAATTTGAAAGTTTGATTTCCGATTTTCCAGAATTTTCGGAGAAGAGATTAGCAAAGTAGGGGGATTGGGAAGAGAGGAACTGAAAACTTGAGATTATAAACTACAAACTACAAAAAAAAACTCACCAATTTTGAAACATAAAACTTTTGTTCACCAATCACAAGAGCAACATCCGAGAATTGTTTCTCTTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>397 211 136 117 48 20 19 18 18 16</canonical_bands>
                <polymorphic_bands>397 229 136 117 48 20 19 18 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGGATTCTTCAGAGCCACT</pcr_primer_p1>
		<pcr_primer_p2>AATCTTATCAATTGCTGATTTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAGGATTCTTCAGAGCCACTAAACGAATATCAGATACTGTTCGAATCCGAGAGACGCAGCTTTTCTGAAAAAATCATATTGCTCGTTTCTATTCAAAAAAGCACCAAACTCACTCTCAACGCGTCCAATTGATATTTTCCAGCCATTTCCAGTTTGTCTTTCAACGATTTTGTCGATTTCTCCAAAAGATATTCTTCACATTTTTTGATGATAGTAGGGGTGTTGTACAAATCAGCAATTGATAAGATT</canonical_amplicon>
		<polymorphic_amplicon>CTAGGATTCTTCAGAGCCACTAAACGAATATCAGATACTGTTCGAATCCGAGAGACGCAGCTTTTCTSAAAAAATCATATTGCTCGTTTCTATTCAAAAAAGCACCAAACTCACTCTCAACGCGTCCAATTGATATTTTCCAGCCATTTCCAGTTTGTCTTTCAACGATTTTGTCGATTTCTCCAAAAGATATTCTTCACATTTTTTGATGATAGTAGGGGTGTTGTACAAATCAGCAATTGATAAGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27401</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>99902</contig_pos>
        <strand>+</strand>
        <context>CAACTTGTCT[G/T]GAGTCTTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATCTGTTCCCGATTTTTCCTCGAAATGTACTTTTTTCTCCAACTTGTCT</left_flank>
        <right_flank>GAGTCTTCAATATTTTCACATCAACCTCCAAATCCAAATTTCCATCGTTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATGATAGTAGGGGTGTTGTACAAATCAGCAATTGATAAGATTCCCTCAACGGTTTCTTCTGGAAAATTCTGAGGATTACGGTAGAGATGAGAGGTACAGTAACCCACCATCTGGTCCAGGTTCTCCGTAAAGGAGTTCCAGGAAGTATTGGAAGTTTTGAGGATTTGAATTTGAAAGTTTGATTTCCGATTTTCCAGAATTTTCGGAGAAGAGATTAGCAAAGTAGGGGGATTGGGAAGAGAGGAACTGAAAACTTGAGATTATAAACTACAAACTACAAAAAAAAACTCACCAATTTTGAAACATAAAACTTTTGTTCACCAATCACAAGAGCAACATCCGAGAATTGTTTCTCTTCAAAGTTTCTACGAATTTTTTTCTCATTTCCCACATTTTCAGTTTCTTTTTCAGTCTCCACTATTATTTGCTCCTCCTCCTCAATTTCCAAATCTGTTCCCGATTTTTCCTCGAAATGTACTTTTTTCTCCAACTTGTCTTGAGTCTTCAATATTTTCACATCAACCTCCAAATCCAAATTTCCATCGTTCAAGTATTTCTTCTCGAAAGTTTCCCAATCCAAAAACATTTTCCATCCCCAATCATTGTGTAGTTCGTTGTTAAAATTCCCAAAAACGTTTGCATTAGATCTTTCGAGACATGTTTCTCGATTTTTCGAGAATATTCTGATAGTAAACTCCACTGATATTGATTGAGATTTTGTCAAATTGGTCACAAGGAATGCTTGAAAATGTCCATGTCGTTTTTTGATCAGGATACTCCTGGAAATAAGAGATTTCAATTTTTCAAATAAAGTTTGCCGTAGAAGCTTTTCGGCAGGTTGAGCTAAACGGTTGTCTTTTGGGCTACACGGTCGCTAGCGCCGGCGATTGTCAAAAAGAAATCAAACTACAGTTTAAAAAAACCAGTCGCAAGATGAAAAAAAAATTACAGTGATCTCGAAAATCAAAAAATCCTTTAAAGGTGGGGGGACAGGAGAT</canonical>
            <polymorphic>TGATGATAGTAGGGGTGTTGTACAAATCAGCAATTGATAAGATTCCCTCAACGGTTTCTTCTGGAAAATTCTGAGGATTACGGTAGAGATGAGAGGTACAGTAACCCACCATCTGGTCCAGGTTCTCCGTAAAGGAGTTCCAGGAAGTATTGGAAGTTTTGAGGATTTGAATTTGAAAGTTTGATTTCCGATTTTCCAGAATTTTCGGAGAAGAGATTAGCAAAGTAGGGGGATTGGGAAGAGAGGAACTGAAAACTTGAGATTATAAACTACAAACTACAAAAAAAAACTCACCAATTTTGAAACATAAAACTTTTGTTCACCAATCACAAGAGCAACATCCGAGAATTGTTTCTCTTCAAAGTTTCTACGAATTTTTTTCTCATTTCCCACATTTTCAGTTTCTTTTTCAGTCTCCACTATTATTTGCTCCTCCTCCTCAATTTCCAAATCTGTTCCCGATTTTTCCTCGAAATGTACTTTTTTCTCCAACTTGTCTKGAGTCTTCAATATTTTCACATCAACCTCCAAATCCAAATTTCCATCGTTCAAGTATTTCTTCTCGAAAGTTTCCCAATCCAAAAACATTTTCCATCCCCAATCATTGTGTAGTTCGTTGTTAAAATTCCCAAAAACGTTTGCATTAGATCTTTCGAGACATGTTTCTCGATTTTTCGAGAATATTCTGATAGTAAACTCCACTGATATTGATTGAGATTTTGTCAAATTGGTCACAAGGAATGCTTGAAAATGTCCATGTCGTTTTTTGATCAGGATACTCCTGGAAATAAGAGATTTCAATTTTTCAAATAAAGTTTGCCGTAGAAGCTTTTCGGCAGGTTGAGCTAAACGGTTGTCTTTTGGGCTACACGGTCGCTAGCGCCGGCGATTGTCAAAAAGAAATCAAACTACAGTTTAAAAAAACCAGTCGCAAGATGAAAAAAAAATTACAGTGATCTCGAAAATCAAAAAATCCTTTAAAGGTGGGGGGACAGGAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>502 256 242</canonical_bands>
                <polymorphic_bands>744 256</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAACTTTTGTTCACCAATCAC</pcr_primer_p1>
		<pcr_primer_p2>AGAAATACTTGAACGATGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TAAAACTTTTGTTCACCAATCACAAGAGCAACATCCGAGAATTGTTTCTCTTCAAAGTTTCTACGAATTTTTTTCTCATTTCCCACATTTTCAGTTTCTTTTTCAGTCTCCACTATTATTTGCTCCTCCTCCTCAATTTCCAAATCTGTTCCCGATTTTTCCTCGAAATGTACTTTTTTCTCCAACTTGTCTTGAGTCTTCAATATTTTCACATCAACCTCCAAATCCAAATTTCCATCGTTCAAGTATTTCT</canonical_amplicon>
		<polymorphic_amplicon>TAAAACTTTTGTTCACCAATCACAAGAGCAACATCCGAGAATTGTTTCTCTTCAAAGTTTCTACGAATTTTTTTCTCATTTCCCACATTTTCAGTTTCTTTTTCAGTCTCCACTATTATTTGCTCCTCCTCCTCAATTTCCAAATCTGTTCCCGATTTTTCCTCGAAATGTACTTTTTTCTCCAACTTGTCTKGAGTCTTCAATATTTTCACATCAACCTCCAAATCCAAATTTCCATCGTTCAAGTATTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27402</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>99989</contig_pos>
        <strand>+</strand>
        <context>ATCCAAAAAC[A/C]TTTTCCATCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTTCCATCGTTCAAGTATTTCTTCTCGAAAGTTTCCCAATCCAAAAAC</left_flank>
        <right_flank>TTTTCCATCCCCAATCATTGTGTAGTTCGTTGTTAAAATTCCCAAAAACG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGAGAGGTACAGTAACCCACCATCTGGTCCAGGTTCTCCGTAAAGGAGTTCCAGGAAGTATTGGAAGTTTTGAGGATTTGAATTTGAAAGTTTGATTTCCGATTTTCCAGAATTTTCGGAGAAGAGATTAGCAAAGTAGGGGGATTGGGAAGAGAGGAACTGAAAACTTGAGATTATAAACTACAAACTACAAAAAAAAACTCACCAATTTTGAAACATAAAACTTTTGTTCACCAATCACAAGAGCAACATCCGAGAATTGTTTCTCTTCAAAGTTTCTACGAATTTTTTTCTCATTTCCCACATTTTCAGTTTCTTTTTCAGTCTCCACTATTATTTGCTCCTCCTCCTCAATTTCCAAATCTGTTCCCGATTTTTCCTCGAAATGTACTTTTTTCTCCAACTTGTCTTGAGTCTTCAATATTTTCACATCAACCTCCAAATCCAAATTTCCATCGTTCAAGTATTTCTTCTCGAAAGTTTCCCAATCCAAAAACATTTTCCATCCCCAATCATTGTGTAGTTCGTTGTTAAAATTCCCAAAAACGTTTGCATTAGATCTTTCGAGACATGTTTCTCGATTTTTCGAGAATATTCTGATAGTAAACTCCACTGATATTGATTGAGATTTTGTCAAATTGGTCACAAGGAATGCTTGAAAATGTCCATGTCGTTTTTTGATCAGGATACTCCTGGAAATAAGAGATTTCAATTTTTCAAATAAAGTTTGCCGTAGAAGCTTTTCGGCAGGTTGAGCTAAACGGTTGTCTTTTGGGCTACACGGTCGCTAGCGCCGGCGATTGTCAAAAAGAAATCAAACTACAGTTTAAAAAAACCAGTCGCAAGATGAAAAAAAAATTACAGTGATCTCGAAAATCAAAAAATCCTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTATAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCT</canonical>
            <polymorphic>GATGAGAGGTACAGTAACCCACCATCTGGTCCAGGTTCTCCGTAAAGGAGTTCCAGGAAGTATTGGAAGTTTTGAGGATTTGAATTTGAAAGTTTGATTTCCGATTTTCCAGAATTTTCGGAGAAGAGATTAGCAAAGTAGGGGGATTGGGAAGAGAGGAACTGAAAACTTGAGATTATAAACTACAAACTACAAAAAAAAACTCACCAATTTTGAAACATAAAACTTTTGTTCACCAATCACAAGAGCAACATCCGAGAATTGTTTCTCTTCAAAGTTTCTACGAATTTTTTTCTCATTTCCCACATTTTCAGTTTCTTTTTCAGTCTCCACTATTATTTGCTCCTCCTCCTCAATTTCCAAATCTGTTCCCGATTTTTCCTCGAAATGTACTTTTTTCTCCAACTTGTCTTGAGTCTTCAATATTTTCACATCAACCTCCAAATCCAAATTTCCATCGTTCAAGTATTTCTTCTCGAAAGTTTCCCAATCCAAAAACMTTTTCCATCCCCAATCATTGTGTAGTTCGTTGTTAAAATTCCCAAAAACGTTTGCATTAGATCTTTCGAGACATGTTTCTCGATTTTTCGAGAATATTCTGATAGTAAACTCCACTGATATTGATTGAGATTTTGTCAAATTGGTCACAAGGAATGCTTGAAAATGTCCATGTCGTTTTTTGATCAGGATACTCCTGGAAATAAGAGATTTCAATTTTTCAAATAAAGTTTGCCGTAGAAGCTTTTCGGCAGGTTGAGCTAAACGGTTGTCTTTTGGGCTACACGGTCGCTAGCGCCGGCGATTGTCAAAAAGAAATCAAACTACAGTTTAAAAAAACCAGTCGCAAGATGAAAAAAAAATTACAGTGATCTCGAAAATCAAAAAATCCTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTATAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCAATATTTTCACATCAACCT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCAAGCATTCCTTGTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTTCAATATTTTCACATCAACCTCCAAATCCAAATTTCCATCGTTCAAGTATTTCTTCTCGAAAGTTTCCCAATCCAAAAACATTTTCCATCCCCAATCATTGTGTAGTTCGTTGTTAAAATTCCCAAAAACGTTTGCATTAGATCTTTCGAGACATGTTTCTCGATTTTTCGAGAATATTCTGATAGTAAACTCCACTGATATTGATTGAGATTTTGTCAAATTGGTCACAAGGAATGCTTGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CTTCAATATTTTCACATCAACCTCCAAATCCAAATTTCCATCGTTCAAGTATTTCTTCTCGAAAGTTTCCCAATCCAAAAACMTTTTCCATCCCCAATCATTGTGTAGTTCGTTGTTAAAATTCCCAAAAACGTTTGCATTAGATCTTTCGAGACATGTTTCTCGATTTTTCGAGAATATTCTGATAGTAAACTCCACTGATATTGATTGAGATTTTGTCAAATTGGTCACAAGGAATGCTTGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27403</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>100040</contig_pos>
        <strand>+</strand>
        <context>CCCAAAAACG[C/T]TTGCATTAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCCATCCCCAATCATTGTGTAGTTCGTTGTTAAAATTCCCAAAAACG</left_flank>
        <right_flank>TTGCATTAGATCTTTCGAGACATGTTTCTCGATTTTTCGAGAATATTCTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAGGAAGTATTGGAAGTTTTGAGGATTTGAATTTGAAAGTTTGATTTCCGATTTTCCAGAATTTTCGGAGAAGAGATTAGCAAAGTAGGGGGATTGGGAAGAGAGGAACTGAAAACTTGAGATTATAAACTACAAACTACAAAAAAAAACTCACCAATTTTGAAACATAAAACTTTTGTTCACCAATCACAAGAGCAACATCCGAGAATTGTTTCTCTTCAAAGTTTCTACGAATTTTTTTCTCATTTCCCACATTTTCAGTTTCTTTTTCAGTCTCCACTATTATTTGCTCCTCCTCCTCAATTTCCAAATCTGTTCCCGATTTTTCCTCGAAATGTACTTTTTTCTCCAACTTGTCTTGAGTCTTCAATATTTTCACATCAACCTCCAAATCCAAATTTCCATCGTTCAAGTATTTCTTCTCGAAAGTTTCCCAATCCAAAAACATTTTCCATCCCCAATCATTGTGTAGTTCGTTGTTAAAATTCCCAAAAACGTTTGCATTAGATCTTTCGAGACATGTTTCTCGATTTTTCGAGAATATTCTGATAGTAAACTCCACTGATATTGATTGAGATTTTGTCAAATTGGTCACAAGGAATGCTTGAAAATGTCCATGTCGTTTTTTGATCAGGATACTCCTGGAAATAAGAGATTTCAATTTTTCAAATAAAGTTTGCCGTAGAAGCTTTTCGGCAGGTTGAGCTAAACGGTTGTCTTTTGGGCTACACGGTCGCTAGCGCCGGCGATTGTCAAAAAGAAATCAAACTACAGTTTAAAAAAACCAGTCGCAAGATGAAAAAAAAATTACAGTGATCTCGAAAATCAAAAAATCCTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTATAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTC</canonical>
            <polymorphic>TCCAGGAAGTATTGGAAGTTTTGAGGATTTGAATTTGAAAGTTTGATTTCCGATTTTCCAGAATTTTCGGAGAAGAGATTAGCAAAGTAGGGGGATTGGGAAGAGAGGAACTGAAAACTTGAGATTATAAACTACAAACTACAAAAAAAAACTCACCAATTTTGAAACATAAAACTTTTGTTCACCAATCACAAGAGCAACATCCGAGAATTGTTTCTCTTCAAAGTTTCTACGAATTTTTTTCTCATTTCCCACATTTTCAGTTTCTTTTTCAGTCTCCACTATTATTTGCTCCTCCTCCTCAATTTCCAAATCTGTTCCCGATTTTTCCTCGAAATGTACTTTTTTCTCCAACTTGTCTTGAGTCTTCAATATTTTCACATCAACCTCCAAATCCAAATTTCCATCGTTCAAGTATTTCTTCTCGAAAGTTTCCCAATCCAAAAACATTTTCCATCCCCAATCATTGTGTAGTTCGTTGTTAAAATTCCCAAAAACGYTTGCATTAGATCTTTCGAGACATGTTTCTCGATTTTTCGAGAATATTCTGATAGTAAACTCCACTGATATTGATTGAGATTTTGTCAAATTGGTCACAAGGAATGCTTGAAAATGTCCATGTCGTTTTTTGATCAGGATACTCCTGGAAATAAGAGATTTCAATTTTTCAAATAAAGTTTGCCGTAGAAGCTTTTCGGCAGGTTGAGCTAAACGGTTGTCTTTTGGGCTACACGGTCGCTAGCGCCGGCGATTGTCAAAAAGAAATCAAACTACAGTTTAAAAAAACCAGTCGCAAGATGAAAAAAAAATTACAGTGATCTCGAAAATCAAAAAATCCTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTATAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAGTATTTCTTCTCGAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TGAAATCTCTTATTTCCAGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCAAGTATTTCTTCTCGAAAGTTTCCCAATCCAAAAACATTTTCCATCCCCAATCATTGTGTAGTTCGTTGTTAAAATTCCCAAAAACGTTTGCATTAGATCTTTCGAGACATGTTTCTCGATTTTTCGAGAATATTCTGATAGTAAACTCCACTGATATTGATTGAGATTTTGTCAAATTGGTCACAAGGAATGCTTGAAAATGTCCATGTCGTTTTTTGATCAGGATACTCCTGGAAATAAGAGATTTCA</canonical_amplicon>
		<polymorphic_amplicon>TCAAGTATTTCTTCTCGAAAGTTTCCCAATCCAAAAACATTTTCCATCCCCAATCATTGTGTAGTTCGTTGTTAAAATTCCCAAAAACGYTTGCATTAGATCTTTCGAGACATGTTTCTCGATTTTTCGAGAATATTCTGATAGTAAACTCCACTGATATTGATTGAGATTTTGTCAAATTGGTCACAAGGAATGCTTGAAAATGTCCATGTCGTTTTTTGATCAGGATACTCCTGGAAATAAGAGATTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27404</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>100064</contig_pos>
        <strand>+</strand>
        <context>TTCGAGACAT[G/T]TTTCTCGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTCGTTGTTAAAATTCCCAAAAACGTTTGCATTAGATCTTTCGAGACAT</left_flank>
        <right_flank>TTTCTCGATTTTTCGAGAATATTCTGATAGTAAACTCCACTGATATTGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATTTGAATTTGAAAGTTTGATTTCCGATTTTCCAGAATTTTCGGAGAAGAGATTAGCAAAGTAGGGGGATTGGGAAGAGAGGAACTGAAAACTTGAGATTATAAACTACAAACTACAAAAAAAAACTCACCAATTTTGAAACATAAAACTTTTGTTCACCAATCACAAGAGCAACATCCGAGAATTGTTTCTCTTCAAAGTTTCTACGAATTTTTTTCTCATTTCCCACATTTTCAGTTTCTTTTTCAGTCTCCACTATTATTTGCTCCTCCTCCTCAATTTCCAAATCTGTTCCCGATTTTTCCTCGAAATGTACTTTTTTCTCCAACTTGTCTTGAGTCTTCAATATTTTCACATCAACCTCCAAATCCAAATTTCCATCGTTCAAGTATTTCTTCTCGAAAGTTTCCCAATCCAAAAACATTTTCCATCCCCAATCATTGTGTAGTTCGTTGTTAAAATTCCCAAAAACGTTTGCATTAGATCTTTCGAGACATGTTTCTCGATTTTTCGAGAATATTCTGATAGTAAACTCCACTGATATTGATTGAGATTTTGTCAAATTGGTCACAAGGAATGCTTGAAAATGTCCATGTCGTTTTTTGATCAGGATACTCCTGGAAATAAGAGATTTCAATTTTTCAAATAAAGTTTGCCGTAGAAGCTTTTCGGCAGGTTGAGCTAAACGGTTGTCTTTTGGGCTACACGGTCGCTAGCGCCGGCGATTGTCAAAAAGAAATCAAACTACAGTTTAAAAAAACCAGTCGCAAGATGAAAAAAAAATTACAGTGATCTCGAAAATCAAAAAATCCTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTATAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTC</canonical>
            <polymorphic>GGATTTGAATTTGAAAGTTTGATTTCCGATTTTCCAGAATTTTCGGAGAAGAGATTAGCAAAGTAGGGGGATTGGGAAGAGAGGAACTGAAAACTTGAGATTATAAACTACAAACTACAAAAAAAAACTCACCAATTTTGAAACATAAAACTTTTGTTCACCAATCACAAGAGCAACATCCGAGAATTGTTTCTCTTCAAAGTTTCTACGAATTTTTTTCTCATTTCCCACATTTTCAGTTTCTTTTTCAGTCTCCACTATTATTTGCTCCTCCTCCTCAATTTCCAAATCTGTTCCCGATTTTTCCTCGAAATGTACTTTTTTCTCCAACTTGTCTTGAGTCTTCAATATTTTCACATCAACCTCCAAATCCAAATTTCCATCGTTCAAGTATTTCTTCTCGAAAGTTTCCCAATCCAAAAACATTTTCCATCCCCAATCATTGTGTAGTTCGTTGTTAAAATTCCCAAAAACGTTTGCATTAGATCTTTCGAGACATKTTTCTCGATTTTTCGAGAATATTCTGATAGTAAACTCCACTGATATTGATTGAGATTTTGTCAAATTGGTCACAAGGAATGCTTGAAAATGTCCATGTCGTTTTTTGATCAGGATACTCCTGGAAATAAGAGATTTCAATTTTTCAAATAAAGTTTGCCGTAGAAGCTTTTCGGCAGGTTGAGCTAAACGGTTGTCTTTTGGGCTACACGGTCGCTAGCGCCGGCGATTGTCAAAAAGAAATCAAACTACAGTTTAAAAAAACCAGTCGCAAGATGAAAAAAAAATTACAGTGATCTCGAAAATCAAAAAATCCTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTATAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>497 406 97</canonical_bands>
                <polymorphic_bands>594 406</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAGTATTTCTTCTCGAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TGAAATCTCTTATTTCCAGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCAAGTATTTCTTCTCGAAAGTTTCCCAATCCAAAAACATTTTCCATCCCCAATCATTGTGTAGTTCGTTGTTAAAATTCCCAAAAACGTTTGCATTAGATCTTTCGAGACATGTTTCTCGATTTTTCGAGAATATTCTGATAGTAAACTCCACTGATATTGATTGAGATTTTGTCAAATTGGTCACAAGGAATGCTTGAAAATGTCCATGTCGTTTTTTGATCAGGATACTCCTGGAAATAAGAGATTTCA</canonical_amplicon>
		<polymorphic_amplicon>TCAAGTATTTCTTCTCGAAAGTTTCCCAATCCAAAAACATTTTCCATCCCCAATCATTGTGTAGTTCGTTGTTAAAATTCCCAAAAACGTTTGCATTAGATCTTTCGAGACATKTTTCTCGATTTTTCGAGAATATTCTGATAGTAAACTCCACTGATATTGATTGAGATTTTGTCAAATTGGTCACAAGGAATGCTTGAAAATGTCCATGTCGTTTTTTGATCAGGATACTCCTGGAAATAAGAGATTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27405</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>100217</contig_pos>
        <strand>+</strand>
        <context>TTCAAATAAA[A/G]TTTGCCGTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGATCAGGATACTCCTGGAAATAAGAGATTTCAATTTTTCAAATAAA</left_flank>
        <right_flank>TTTGCCGTAGAAGCTTTTCGGCAGGTTGAGCTAAACGGTTGTCTTTTGGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTCACCAATCACAAGAGCAACATCCGAGAATTGTTTCTCTTCAAAGTTTCTACGAATTTTTTTCTCATTTCCCACATTTTCAGTTTCTTTTTCAGTCTCCACTATTATTTGCTCCTCCTCCTCAATTTCCAAATCTGTTCCCGATTTTTCCTCGAAATGTACTTTTTTCTCCAACTTGTCTTGAGTCTTCAATATTTTCACATCAACCTCCAAATCCAAATTTCCATCGTTCAAGTATTTCTTCTCGAAAGTTTCCCAATCCAAAAACATTTTCCATCCCCAATCATTGTGTAGTTCGTTGTTAAAATTCCCAAAAACGTTTGCATTAGATCTTTCGAGACATGTTTCTCGATTTTTCGAGAATATTCTGATAGTAAACTCCACTGATATTGATTGAGATTTTGTCAAATTGGTCACAAGGAATGCTTGAAAATGTCCATGTCGTTTTTTGATCAGGATACTCCTGGAAATAAGAGATTTCAATTTTTCAAATAAAGTTTGCCGTAGAAGCTTTTCGGCAGGTTGAGCTAAACGGTTGTCTTTTGGGCTACACGGTCGCTAGCGCCGGCGATTGTCAAAAAGAAATCAAACTACAGTTTAAAAAAACCAGTCGCAAGATGAAAAAAAAATTACAGTGATCTCGAAAATCAAAAAATCCTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTATAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCCCAAGTTCAACTCCTCGAGGGGCATCTTTGAACGAAATTTCGAGAACATATTTTTTTTTCATGTCCCCCCACCTTTAAAAGTTAAAATTTAAAAATTCTTTTTTTCAGAAAATATTCTTCTCAATTTAGTTAAAAATCAA</canonical>
            <polymorphic>TTGTTCACCAATCACAAGAGCAACATCCGAGAATTGTTTCTCTTCAAAGTTTCTACGAATTTTTTTCTCATTTCCCACATTTTCAGTTTCTTTTTCAGTCTCCACTATTATTTGCTCCTCCTCCTCAATTTCCAAATCTGTTCCCGATTTTTCCTCGAAATGTACTTTTTTCTCCAACTTGTCTTGAGTCTTCAATATTTTCACATCAACCTCCAAATCCAAATTTCCATCGTTCAAGTATTTCTTCTCGAAAGTTTCCCAATCCAAAAACATTTTCCATCCCCAATCATTGTGTAGTTCGTTGTTAAAATTCCCAAAAACGTTTGCATTAGATCTTTCGAGACATGTTTCTCGATTTTTCGAGAATATTCTGATAGTAAACTCCACTGATATTGATTGAGATTTTGTCAAATTGGTCACAAGGAATGCTTGAAAATGTCCATGTCGTTTTTTGATCAGGATACTCCTGGAAATAAGAGATTTCAATTTTTCAAATAAARTTTGCCGTAGAAGCTTTTCGGCAGGTTGAGCTAAACGGTTGTCTTTTGGGCTACACGGTCGCTAGCGCCGGCGATTGTCAAAAAGAAATCAAACTACAGTTTAAAAAAACCAGTCGCAAGATGAAAAAAAAATTACAGTGATCTCGAAAATCAAAAAATCCTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTATAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCCCAAGTTCAACTCCTCGAGGGGCATCTTTGAACGAAATTTCGAGAACATATTTTTTTTTCATGTCCCCCCACCTTTAAAAGTTAAAATTTAAAAATTCTTTTTTTCAGAAAATATTCTTCTCAATTTAGTTAAAAATCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTCAAATTGGTCACAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTCGAGATCACTGTAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTGTCAAATTGGTCACAAGGAATGCTTGAAAATGTCCATGTCGTTTTTTGATCAGGATACTCCTGGAAATAAGAGATTTCAATTTTTCAAATAAAGTTTGCCGTAGAAGCTTTTCGGCAGGTTGAGCTAAACGGTTGTCTTTTGGGCTACACGGTCGCTAGCGCCGGCGATTGTCAAAAAGAAATCAAACTACAGTTTAAAAAAACCAGTCGCAAGATGAAAAAAAAATTACAGTGATCTCGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTGTCAAATTGGTCACAAGGAATGCTTGAAAATGTCCATGTCGTTTTTTGATCAGGATACTCCTGGAAATAAGAGATTTCAATTTTTCAAATAAARTTTGCCGTAGAAGCTTTTCGGCAGGTTGAGCTAAACGGTTGTCTTTTGGGCTACACGGTCGCTAGCGCCGGCGATTGTCAAAAAGAAATCAAACTACAGTTTAAAAAAACCAGTCGCAAGATGAAAAAAAAATTACAGTGATCTCGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27406</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>100240</contig_pos>
        <strand>+</strand>
        <context>GCTTTTCGGC[A/C]GGTTGAGCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATAAGAGATTTCAATTTTTCAAATAAAGTTTGCCGTAGAAGCTTTTCGGC</left_flank>
        <right_flank>GGTTGAGCTAAACGGTTGTCTTTTGGGCTACACGGTCGCTAGCGCCGGCG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCCGAGAATTGTTTCTCTTCAAAGTTTCTACGAATTTTTTTCTCATTTCCCACATTTTCAGTTTCTTTTTCAGTCTCCACTATTATTTGCTCCTCCTCCTCAATTTCCAAATCTGTTCCCGATTTTTCCTCGAAATGTACTTTTTTCTCCAACTTGTCTTGAGTCTTCAATATTTTCACATCAACCTCCAAATCCAAATTTCCATCGTTCAAGTATTTCTTCTCGAAAGTTTCCCAATCCAAAAACATTTTCCATCCCCAATCATTGTGTAGTTCGTTGTTAAAATTCCCAAAAACGTTTGCATTAGATCTTTCGAGACATGTTTCTCGATTTTTCGAGAATATTCTGATAGTAAACTCCACTGATATTGATTGAGATTTTGTCAAATTGGTCACAAGGAATGCTTGAAAATGTCCATGTCGTTTTTTGATCAGGATACTCCTGGAAATAAGAGATTTCAATTTTTCAAATAAAGTTTGCCGTAGAAGCTTTTCGGCAGGTTGAGCTAAACGGTTGTCTTTTGGGCTACACGGTCGCTAGCGCCGGCGATTGTCAAAAAGAAATCAAACTACAGTTTAAAAAAACCAGTCGCAAGATGAAAAAAAAATTACAGTGATCTCGAAAATCAAAAAATCCTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTATAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCCCAAGTTCAACTCCTCGAGGGGCATCTTTGAACGAAATTTCGAGAACATATTTTTTTTTCATGTCCCCCCACCTTTAAAAGTTAAAATTTAAAAATTCTTTTTTTCAGAAAATATTCTTCTCAATTTAGTTAAAAATCAAAATCCTACAAATTCAGCATCAAA</canonical>
            <polymorphic>CATCCGAGAATTGTTTCTCTTCAAAGTTTCTACGAATTTTTTTCTCATTTCCCACATTTTCAGTTTCTTTTTCAGTCTCCACTATTATTTGCTCCTCCTCCTCAATTTCCAAATCTGTTCCCGATTTTTCCTCGAAATGTACTTTTTTCTCCAACTTGTCTTGAGTCTTCAATATTTTCACATCAACCTCCAAATCCAAATTTCCATCGTTCAAGTATTTCTTCTCGAAAGTTTCCCAATCCAAAAACATTTTCCATCCCCAATCATTGTGTAGTTCGTTGTTAAAATTCCCAAAAACGTTTGCATTAGATCTTTCGAGACATGTTTCTCGATTTTTCGAGAATATTCTGATAGTAAACTCCACTGATATTGATTGAGATTTTGTCAAATTGGTCACAAGGAATGCTTGAAAATGTCCATGTCGTTTTTTGATCAGGATACTCCTGGAAATAAGAGATTTCAATTTTTCAAATAAAGTTTGCCGTAGAAGCTTTTCGGCMGGTTGAGCTAAACGGTTGTCTTTTGGGCTACACGGTCGCTAGCGCCGGCGATTGTCAAAAAGAAATCAAACTACAGTTTAAAAAAACCAGTCGCAAGATGAAAAAAAAATTACAGTGATCTCGAAAATCAAAAAATCCTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTATAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCCCAAGTTCAACTCCTCGAGGGGCATCTTTGAACGAAATTTCGAGAACATATTTTTTTTTCATGTCCCCCCACCTTTAAAAGTTAAAATTTAAAAATTCTTTTTTTCAGAAAATATTCTTCTCAATTTAGTTAAAAATCAAAATCCTACAAATTCAGCATCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAGGATACTCCTGGAAATAAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAACTACGAAAAATCTCCTGT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATCAGGATACTCCTGGAAATAAGAGATTTCAATTTTTCAAATAAAGTTTGCCGTAGAAGCTTTTCGGCAGGTTGAGCTAAACGGTTGTCTTTTGGGCTACACGGTCGCTAGCGCCGGCGATTGTCAAAAAGAAATCAAACTACAGTTTAAAAAAACCAGTCGCAAGATGAAAAAAAAATTACAGTGATCTCGAAAATCAAAAAATCCTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATCAGGATACTCCTGGAAATAAGAGATTTCAATTTTTCAAATAAAGTTTGCCGTAGAAGCTTTTCGGCMGGTTGAGCTAAACGGTTGTCTTTTGGGCTACACGGTCGCTAGCGCCGGCGATTGTCAAAAAGAAATCAAACTACAGTTTAAAAAAACCAGTCGCAAGATGAAAAAAAAATTACAGTGATCTCGAAAATCAAAAAATCCTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27407</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>102305</contig_pos>
        <strand>+</strand>
        <context>AACTTCCAAT[C/T]CTTCCTRGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAAT</left_flank>
        <right_flank>CTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTGGAAGTTCGTGTGAAAATTTTGGAAAATTCTGGAAATCAAAAAACGTTTTCAAAAGAACTGGAAATTGGAAGAGAATATGAGACGGAAGCTGTAAGAAGAACTCAAAAGTATTTTGAGGGATTGAAGATCGATACACCAAAAAAAGTTGAACATTCAAGAAGAGTTCATTTTGTAGAAACAAGAGTGGTACCTTCAGGAAAAGCTGTTGAAAAATCTTCAACATTCGAAAAAAGAGATTCGGAGCAAAAGATTGAAAAATGTCGAAAAAATGCGAGAAGTTTTGAAGACAAACAATTCTCAGATGTTGTTCTTGTGATTGATGAACAAAAGTTCTATGTTGCAAAATTGGTTAGTTTTTTTTGTAGTTTGTAGTTTATAATCTCAAGTTTTCAGTTCCTCTCTTCCCAATCCCCCTACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCCATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGGAGAAATCGACAAAATCGTTGAAAGACAAACTGGAAATGGCTGGAAAATATAAATTGGACGCGTTGAGAGTGAGTTTGGTGCTTTTTTGAATAGAAACGAGCAATATGATTTTTTCAGAAAAGCTGCGTCTCTCGGATTCGAACAGTATCTGATATTCGTTCAGTGGCTCTGAAGAATCCCAGAGAAATGGACCATTTGATTCTTGCTGCTCTTTTTCAGAAGGTTTTAACTCTTGTTTGAACATTTTTTGACGAATTTTCTAAATAAAAATTAATTTTCTTCTTCTCTTGAAATTACCGTACACACTCTAATAGAACGCCACCCGGACCGT</canonical>
            <polymorphic>AAATTGGAAGTTCGTGTGAAAATTTTGGAAAATTCTGGAAATCAAAAAACGTTTTCAAAAGAACTGGAAATTGGAAGAGAATATGAGACGGAAGCTGTAAGAAGAACTCAAAAGTATTTTGAGGGATTGAAGATCGATACACCAAAAAAAGTTGAACATTCAAGAAGAGTTCATTTTGTAGAAACAAGAGTGGTACCTTCAGGAAAAGCTGTTGAAAAATCTTCAACATTCGAAAAAAGAGATTCGGAGCAAAAGATTGAAAAATGTCGAAAAAATGCGAGAAGTTTTGAAGACAAACAATTCTCAGATGTTGTTCTTGTGATTGATGAACAAAAGTTCTATGTTGCAAAATTGGTTAGTTTTTTTTGTAGTTTGTAGTTTATAATCTCAAGTTTTCAGTTCCTCTCTTCCCAATCCCCCTACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATYCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCCATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGGAGAAATCGACAAAATCGTTGAAAGACAAACTGGAAATGGCTGGAAAATATAAATTGGACGCGTTGAGAGTGAGTTTGGTGCTTTTTTGAATAGAAACGAGCAATATGATTTTTTCAGAAAAGCTGCGTCTCTCGGATTCGAACAGTATCTGATATTCGTTCAGTGGCTCTGAAGAATCCCAGAGAAATGGACCATTTGATTCTTGCTGCTCTTTTTCAGAAGGTTTTAACTCTTGTTTGAACATTTTTTGACGAATTTTCTAAATAAAAATTAATTTTCTTCTTCTCTTGAAATTACCGTACACACTCTAATAGAACGCCACCCGGACCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>230 202 114 110 95 51 40 38 30 22 19 19 15 10 4 1</canonical_bands>
                <polymorphic_bands>230 202 136 110 95 51 40 38 30 19 19 15 10 4 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTACTTTGCTAATCTCTTCTCC</pcr_primer_p1>
		<pcr_primer_p2>CCAAAAGATATTCTTCACATTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCTACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCCATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGG</canonical_amplicon>
		<polymorphic_amplicon>CCTACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATYCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCCATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27408</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>102312</contig_pos>
        <strand>+</strand>
        <context>AATYCTTCCT[A/G]GAAATCCTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCT</left_flank>
        <right_flank>GAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTTCGTGTGAAAATTTTGGAAAATTCTGGAAATCAAAAAACGTTTTCAAAAGAACTGGAAATTGGAAGAGAATATGAGACGGAAGCTGTAAGAAGAACTCAAAAGTATTTTGAGGGATTGAAGATCGATACACCAAAAAAAGTTGAACATTCAAGAAGAGTTCATTTTGTAGAAACAAGAGTGGTACCTTCAGGAAAAGCTGTTGAAAAATCTTCAACATTCGAAAAAAGAGATTCGGAGCAAAAGATTGAAAAATGTCGAAAAAATGCGAGAAGTTTTGAAGACAAACAATTCTCAGATGTTGTTCTTGTGATTGATGAACAAAAGTTCTATGTTGCAAAATTGGTTAGTTTTTTTTGTAGTTTGTAGTTTATAATCTCAAGTTTTCAGTTCCTCTCTTCCCAATCCCCCTACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCCATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGGAGAAATCGACAAAATCGTTGAAAGACAAACTGGAAATGGCTGGAAAATATAAATTGGACGCGTTGAGAGTGAGTTTGGTGCTTTTTTGAATAGAAACGAGCAATATGATTTTTTCAGAAAAGCTGCGTCTCTCGGATTCGAACAGTATCTGATATTCGTTCAGTGGCTCTGAAGAATCCCAGAGAAATGGACCATTTGATTCTTGCTGCTCTTTTTCAGAAGGTTTTAACTCTTGTTTGAACATTTTTTGACGAATTTTCTAAATAAAAATTAATTTTCTTCTTCTCTTGAAATTACCGTACACACTCTAATAGAACGCCACCCGGACCGTTCCCTTT</canonical>
            <polymorphic>AAGTTCGTGTGAAAATTTTGGAAAATTCTGGAAATCAAAAAACGTTTTCAAAAGAACTGGAAATTGGAAGAGAATATGAGACGGAAGCTGTAAGAAGAACTCAAAAGTATTTTGAGGGATTGAAGATCGATACACCAAAAAAAGTTGAACATTCAAGAAGAGTTCATTTTGTAGAAACAAGAGTGGTACCTTCAGGAAAAGCTGTTGAAAAATCTTCAACATTCGAAAAAAGAGATTCGGAGCAAAAGATTGAAAAATGTCGAAAAAATGCGAGAAGTTTTGAAGACAAACAATTCTCAGATGTTGTTCTTGTGATTGATGAACAAAAGTTCTATGTTGCAAAATTGGTTAGTTTTTTTTGTAGTTTGTAGTTTATAATCTCAAGTTTTCAGTTCCTCTCTTCCCAATCCCCCTACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCTRGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCCATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGGAGAAATCGACAAAATCGTTGAAAGACAAACTGGAAATGGCTGGAAAATATAAATTGGACGCGTTGAGAGTGAGTTTGGTGCTTTTTTGAATAGAAACGAGCAATATGATTTTTTCAGAAAAGCTGCGTCTCTCGGATTCGAACAGTATCTGATATTCGTTCAGTGGCTCTGAAGAATCCCAGAGAAATGGACCATTTGATTCTTGCTGCTCTTTTTCAGAAGGTTTTAACTCTTGTTTGAACATTTTTTGACGAATTTTCTAAATAAAAATTAATTTTCTTCTTCTCTTGAAATTACCGTACACACTCTAATAGAACGCCACCCGGACCGTTCCCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTACTTTGCTAATCTCTTCTCC</pcr_primer_p1>
		<pcr_primer_p2>CCAAAAGATATTCTTCACATTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCTACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCCATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGG</canonical_amplicon>
		<polymorphic_amplicon>CCTACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCTRGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCCATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27409</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>102361</contig_pos>
        <strand>+</strand>
        <context>ACTGTACCTC[C/T]CTCCACWMAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTC</left_flank>
        <right_flank>CTCCACCCATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGAACTGGAAATTGGAAGAGAATATGAGACGGAAGCTGTAAGAAGAACTCAAAAGTATTTTGAGGGATTGAAGATCGATACACCAAAAAAAGTTGAACATTCAAGAAGAGTTCATTTTGTAGAAACAAGAGTGGTACCTTCAGGAAAAGCTGTTGAAAAATCTTCAACATTCGAAAAAAGAGATTCGGAGCAAAAGATTGAAAAATGTCGAAAAAATGCGAGAAGTTTTGAAGACAAACAATTCTCAGATGTTGTTCTTGTGATTGATGAACAAAAGTTCTATGTTGCAAAATTGGTTAGTTTTTTTTGTAGTTTGTAGTTTATAATCTCAAGTTTTCAGTTCCTCTCTTCCCAATCCCCCTACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCCATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGGAGAAATCGACAAAATCGTTGAAAGACAAACTGGAAATGGCTGGAAAATATAAATTGGACGCGTTGAGAGTGAGTTTGGTGCTTTTTTGAATAGAAACGAGCAATATGATTTTTTCAGAAAAGCTGCGTCTCTCGGATTCGAACAGTATCTGATATTCGTTCAGTGGCTCTGAAGAATCCCAGAGAAATGGACCATTTGATTCTTGCTGCTCTTTTTCAGAAGGTTTTAACTCTTGTTTGAACATTTTTTGACGAATTTTCTAAATAAAAATTAATTTTCTTCTTCTCTTGAAATTACCGTACACACTCTAATAGAACGCCACCCGGACCGTTCCCTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAATTTGTAAACT</canonical>
            <polymorphic>AAAAGAACTGGAAATTGGAAGAGAATATGAGACGGAAGCTGTAAGAAGAACTCAAAAGTATTTTGAGGGATTGAAGATCGATACACCAAAAAAAGTTGAACATTCAAGAAGAGTTCATTTTGTAGAAACAAGAGTGGTACCTTCAGGAAAAGCTGTTGAAAAATCTTCAACATTCGAAAAAAGAGATTCGGAGCAAAAGATTGAAAAATGTCGAAAAAATGCGAGAAGTTTTGAAGACAAACAATTCTCAGATGTTGTTCTTGTGATTGATGAACAAAAGTTCTATGTTGCAAAATTGGTTAGTTTTTTTTGTAGTTTGTAGTTTATAATCTCAAGTTTTCAGTTCCTCTCTTCCCAATCCCCCTACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCYCTCCACCCATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGGAGAAATCGACAAAATCGTTGAAAGACAAACTGGAAATGGCTGGAAAATATAAATTGGACGCGTTGAGAGTGAGTTTGGTGCTTTTTTGAATAGAAACGAGCAATATGATTTTTTCAGAAAAGCTGCGTCTCTCGGATTCGAACAGTATCTGATATTCGTTCAGTGGCTCTGAAGAATCCCAGAGAAATGGACCATTTGATTCTTGCTGCTCTTTTTCAGAAGGTTTTAACTCTTGTTTGAACATTTTTTGACGAATTTTCTAAATAAAAATTAATTTTCTTCTTCTCTTGAAATTACCGTACACACTCTAATAGAACGCCACCCGGACCGTTCCCTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAATTTGTAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTACTTTGCTAATCTCTTCTCC</pcr_primer_p1>
		<pcr_primer_p2>CCAAAAGATATTCTTCACATTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCTACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCCATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGG</canonical_amplicon>
		<polymorphic_amplicon>CCTACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCYCTCCACCCATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27410</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>102368</contig_pos>
        <strand>+</strand>
        <context>CTCYCTCCAC[A/T]MATRATCCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCAC</left_flank>
        <right_flank>CATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGAAATTGGAAGAGAATATGAGACGGAAGCTGTAAGAAGAACTCAAAAGTATTTTGAGGGATTGAAGATCGATACACCAAAAAAAGTTGAACATTCAAGAAGAGTTCATTTTGTAGAAACAAGAGTGGTACCTTCAGGAAAAGCTGTTGAAAAATCTTCAACATTCGAAAAAAGAGATTCGGAGCAAAAGATTGAAAAATGTCGAAAAAATGCGAGAAGTTTTGAAGACAAACAATTCTCAGATGTTGTTCTTGTGATTGATGAACAAAAGTTCTATGTTGCAAAATTGGTTAGTTTTTTTTGTAGTTTGTAGTTTATAATCTCAAGTTTTCAGTTCCTCTCTTCCCAATCCCCCTACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCCATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGGAGAAATCGACAAAATCGTTGAAAGACAAACTGGAAATGGCTGGAAAATATAAATTGGACGCGTTGAGAGTGAGTTTGGTGCTTTTTTGAATAGAAACGAGCAATATGATTTTTTCAGAAAAGCTGCGTCTCTCGGATTCGAACAGTATCTGATATTCGTTCAGTGGCTCTGAAGAATCCCAGAGAAATGGACCATTTGATTCTTGCTGCTCTTTTTCAGAAGGTTTTAACTCTTGTTTGAACATTTTTTGACGAATTTTCTAAATAAAAATTAATTTTCTTCTTCTCTTGAAATTACCGTACACACTCTAATAGAACGCCACCCGGACCGTTCCCTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAATTTGTAAACTAGTAAAA</canonical>
            <polymorphic>CTGGAAATTGGAAGAGAATATGAGACGGAAGCTGTAAGAAGAACTCAAAAGTATTTTGAGGGATTGAAGATCGATACACCAAAAAAAGTTGAACATTCAAGAAGAGTTCATTTTGTAGAAACAAGAGTGGTACCTTCAGGAAAAGCTGTTGAAAAATCTTCAACATTCGAAAAAAGAGATTCGGAGCAAAAGATTGAAAAATGTCGAAAAAATGCGAGAAGTTTTGAAGACAAACAATTCTCAGATGTTGTTCTTGTGATTGATGAACAAAAGTTCTATGTTGCAAAATTGGTTAGTTTTTTTTGTAGTTTGTAGTTTATAATCTCAAGTTTTCAGTTCCTCTCTTCCCAATCCCCCTACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACWCATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGGAGAAATCGACAAAATCGTTGAAAGACAAACTGGAAATGGCTGGAAAATATAAATTGGACGCGTTGAGAGTGAGTTTGGTGCTTTTTTGAATAGAAACGAGCAATATGATTTTTTCAGAAAAGCTGCGTCTCTCGGATTCGAACAGTATCTGATATTCGTTCAGTGGCTCTGAAGAATCCCAGAGAAATGGACCATTTGATTCTTGCTGCTCTTTTTCAGAAGGTTTTAACTCTTGTTTGAACATTTTTTGACGAATTTTCTAAATAAAAATTAATTTTCTTCTTCTCTTGAAATTACCGTACACACTCTAATAGAACGCCACCCGGACCGTTCCCTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAATTTGTAAACTAGTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTACTTTGCTAATCTCTTCTCC</pcr_primer_p1>
		<pcr_primer_p2>CCAAAAGATATTCTTCACATTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCTACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCCATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGG</canonical_amplicon>
		<polymorphic_amplicon>CCTACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACWCATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27411</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>102369</contig_pos>
        <strand>+</strand>
        <context>TCYCTCCACW[A/C]ATRATCCTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACC</left_flank>
        <right_flank>ATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAAATTGGAAGAGAATATGAGACGGAAGCTGTAAGAAGAACTCAAAAGTATTTTGAGGGATTGAAGATCGATACACCAAAAAAAGTTGAACATTCAAGAAGAGTTCATTTTGTAGAAACAAGAGTGGTACCTTCAGGAAAAGCTGTTGAAAAATCTTCAACATTCGAAAAAAGAGATTCGGAGCAAAAGATTGAAAAATGTCGAAAAAATGCGAGAAGTTTTGAAGACAAACAATTCTCAGATGTTGTTCTTGTGATTGATGAACAAAAGTTCTATGTTGCAAAATTGGTTAGTTTTTTTTGTAGTTTGTAGTTTATAATCTCAAGTTTTCAGTTCCTCTCTTCCCAATCCCCCTACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCCATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGGAGAAATCGACAAAATCGTTGAAAGACAAACTGGAAATGGCTGGAAAATATAAATTGGACGCGTTGAGAGTGAGTTTGGTGCTTTTTTGAATAGAAACGAGCAATATGATTTTTTCAGAAAAGCTGCGTCTCTCGGATTCGAACAGTATCTGATATTCGTTCAGTGGCTCTGAAGAATCCCAGAGAAATGGACCATTTGATTCTTGCTGCTCTTTTTCAGAAGGTTTTAACTCTTGTTTGAACATTTTTTGACGAATTTTCTAAATAAAAATTAATTTTCTTCTTCTCTTGAAATTACCGTACACACTCTAATAGAACGCCACCCGGACCGTTCCCTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAATTTGTAAACTAGTAAAAT</canonical>
            <polymorphic>TGGAAATTGGAAGAGAATATGAGACGGAAGCTGTAAGAAGAACTCAAAAGTATTTTGAGGGATTGAAGATCGATACACCAAAAAAAGTTGAACATTCAAGAAGAGTTCATTTTGTAGAAACAAGAGTGGTACCTTCAGGAAAAGCTGTTGAAAAATCTTCAACATTCGAAAAAAGAGATTCGGAGCAAAAGATTGAAAAATGTCGAAAAAATGCGAGAAGTTTTGAAGACAAACAATTCTCAGATGTTGTTCTTGTGATTGATGAACAAAAGTTCTATGTTGCAAAATTGGTTAGTTTTTTTTGTAGTTTGTAGTTTATAATCTCAAGTTTTCAGTTCCTCTCTTCCCAATCCCCCTACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCMATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGGAGAAATCGACAAAATCGTTGAAAGACAAACTGGAAATGGCTGGAAAATATAAATTGGACGCGTTGAGAGTGAGTTTGGTGCTTTTTTGAATAGAAACGAGCAATATGATTTTTTCAGAAAAGCTGCGTCTCTCGGATTCGAACAGTATCTGATATTCGTTCAGTGGCTCTGAAGAATCCCAGAGAAATGGACCATTTGATTCTTGCTGCTCTTTTTCAGAAGGTTTTAACTCTTGTTTGAACATTTTTTGACGAATTTTCTAAATAAAAATTAATTTTCTTCTTCTCTTGAAATTACCGTACACACTCTAATAGAACGCCACCCGGACCGTTCCCTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAATTTGTAAACTAGTAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTACTTTGCTAATCTCTTCTCC</pcr_primer_p1>
		<pcr_primer_p2>CCAAAAGATATTCTTCACATTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCTACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCCATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGG</canonical_amplicon>
		<polymorphic_amplicon>CCTACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCMATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27412</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>102372</contig_pos>
        <strand>+</strand>
        <context>CTCCACWMAT[A/G]ATCCTGASAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCCAT</left_flank>
        <right_flank>ATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTGGAAGAGAATATGAGACGGAAGCTGTAAGAAGAACTCAAAAGTATTTTGAGGGATTGAAGATCGATACACCAAAAAAAGTTGAACATTCAAGAAGAGTTCATTTTGTAGAAACAAGAGTGGTACCTTCAGGAAAAGCTGTTGAAAAATCTTCAACATTCGAAAAAAGAGATTCGGAGCAAAAGATTGAAAAATGTCGAAAAAATGCGAGAAGTTTTGAAGACAAACAATTCTCAGATGTTGTTCTTGTGATTGATGAACAAAAGTTCTATGTTGCAAAATTGGTTAGTTTTTTTTGTAGTTTGTAGTTTATAATCTCAAGTTTTCAGTTCCTCTCTTCCCAATCCCCCTACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCCATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGGAGAAATCGACAAAATCGTTGAAAGACAAACTGGAAATGGCTGGAAAATATAAATTGGACGCGTTGAGAGTGAGTTTGGTGCTTTTTTGAATAGAAACGAGCAATATGATTTTTTCAGAAAAGCTGCGTCTCTCGGATTCGAACAGTATCTGATATTCGTTCAGTGGCTCTGAAGAATCCCAGAGAAATGGACCATTTGATTCTTGCTGCTCTTTTTCAGAAGGTTTTAACTCTTGTTTGAACATTTTTTGACGAATTTTCTAAATAAAAATTAATTTTCTTCTTCTCTTGAAATTACCGTACACACTCTAATAGAACGCCACCCGGACCGTTCCCTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAATTTGTAAACTAGTAAAATGTT</canonical>
            <polymorphic>AAATTGGAAGAGAATATGAGACGGAAGCTGTAAGAAGAACTCAAAAGTATTTTGAGGGATTGAAGATCGATACACCAAAAAAAGTTGAACATTCAAGAAGAGTTCATTTTGTAGAAACAAGAGTGGTACCTTCAGGAAAAGCTGTTGAAAAATCTTCAACATTCGAAAAAAGAGATTCGGAGCAAAAGATTGAAAAATGTCGAAAAAATGCGAGAAGTTTTGAAGACAAACAATTCTCAGATGTTGTTCTTGTGATTGATGAACAAAAGTTCTATGTTGCAAAATTGGTTAGTTTTTTTTGTAGTTTGTAGTTTATAATCTCAAGTTTTCAGTTCCTCTCTTCCCAATCCCCCTACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCCATRATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGGAGAAATCGACAAAATCGTTGAAAGACAAACTGGAAATGGCTGGAAAATATAAATTGGACGCGTTGAGAGTGAGTTTGGTGCTTTTTTGAATAGAAACGAGCAATATGATTTTTTCAGAAAAGCTGCGTCTCTCGGATTCGAACAGTATCTGATATTCGTTCAGTGGCTCTGAAGAATCCCAGAGAAATGGACCATTTGATTCTTGCTGCTCTTTTTCAGAAGGTTTTAACTCTTGTTTGAACATTTTTTGACGAATTTTCTAAATAAAAATTAATTTTCTTCTTCTCTTGAAATTACCGTACACACTCTAATAGAACGCCACCCGGACCGTTCCCTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAATTTGTAAACTAGTAAAATGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTACTTTGCTAATCTCTTCTCC</pcr_primer_p1>
		<pcr_primer_p2>CCAAAAGATATTCTTCACATTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCTACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCCATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGG</canonical_amplicon>
		<polymorphic_amplicon>CCTACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCCATRATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27413</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>102380</contig_pos>
        <strand>+</strand>
        <context>ATRATCCTGA[C/G]AATATTCCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCCATAATCCTGA</left_flank>
        <right_flank>AATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGAATATGAGACGGAAGCTGTAAGAAGAACTCAAAAGTATTTTGAGGGATTGAAGATCGATACACCAAAAAAAGTTGAACATTCAAGAAGAGTTCATTTTGTAGAAACAAGAGTGGTACCTTCAGGAAAAGCTGTTGAAAAATCTTCAACATTCGAAAAAAGAGATTCGGAGCAAAAGATTGAAAAATGTCGAAAAAATGCGAGAAGTTTTGAAGACAAACAATTCTCAGATGTTGTTCTTGTGATTGATGAACAAAAGTTCTATGTTGCAAAATTGGTTAGTTTTTTTTGTAGTTTGTAGTTTATAATCTCAAGTTTTCAGTTCCTCTCTTCCCAATCCCCCTACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCCATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGGAGAAATCGACAAAATCGTTGAAAGACAAACTGGAAATGGCTGGAAAATATAAATTGGACGCGTTGAGAGTGAGTTTGGTGCTTTTTTGAATAGAAACGAGCAATATGATTTTTTCAGAAAAGCTGCGTCTCTCGGATTCGAACAGTATCTGATATTCGTTCAGTGGCTCTGAAGAATCCCAGAGAAATGGACCATTTGATTCTTGCTGCTCTTTTTCAGAAGGTTTTAACTCTTGTTTGAACATTTTTTGACGAATTTTCTAAATAAAAATTAATTTTCTTCTTCTCTTGAAATTACCGTACACACTCTAATAGAACGCCACCCGGACCGTTCCCTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAATTTGTAAACTAGTAAAATGTTTATCATGA</canonical>
            <polymorphic>AGAGAATATGAGACGGAAGCTGTAAGAAGAACTCAAAAGTATTTTGAGGGATTGAAGATCGATACACCAAAAAAAGTTGAACATTCAAGAAGAGTTCATTTTGTAGAAACAAGAGTGGTACCTTCAGGAAAAGCTGTTGAAAAATCTTCAACATTCGAAAAAAGAGATTCGGAGCAAAAGATTGAAAAATGTCGAAAAAATGCGAGAAGTTTTGAAGACAAACAATTCTCAGATGTTGTTCTTGTGATTGATGAACAAAAGTTCTATGTTGCAAAATTGGTTAGTTTTTTTTGTAGTTTGTAGTTTATAATCTCAAGTTTTCAGTTCCTCTCTTCCCAATCCCCCTACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCCATAATCCTGASAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGGAGAAATCGACAAAATCGTTGAAAGACAAACTGGAAATGGCTGGAAAATATAAATTGGACGCGTTGAGAGTGAGTTTGGTGCTTTTTTGAATAGAAACGAGCAATATGATTTTTTCAGAAAAGCTGCGTCTCTCGGATTCGAACAGTATCTGATATTCGTTCAGTGGCTCTGAAGAATCCCAGAGAAATGGACCATTTGATTCTTGCTGCTCTTTTTCAGAAGGTTTTAACTCTTGTTTGAACATTTTTTGACGAATTTTCTAAATAAAAATTAATTTTCTTCTTCTCTTGAAATTACCGTACACACTCTAATAGAACGCCACCCGGACCGTTCCCTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAATTTGTAAACTAGTAAAATGTTTATCATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 268 228</canonical_bands>
                <polymorphic_bands>772 228</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTACTTTGCTAATCTCTTCTCC</pcr_primer_p1>
		<pcr_primer_p2>CCAAAAGATATTCTTCACATTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCTACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCCATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGG</canonical_amplicon>
		<polymorphic_amplicon>CCTACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCCATAATCCTGASAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27414</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>102427</contig_pos>
        <strand>+</strand>
        <context>ATTGCTGATA[C/T]GTACAACACC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATA</left_flank>
        <right_flank>GTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGATTGAAGATCGATACACCAAAAAAAGTTGAACATTCAAGAAGAGTTCATTTTGTAGAAACAAGAGTGGTACCTTCAGGAAAAGCTGTTGAAAAATCTTCAACATTCGAAAAAAGAGATTCGGAGCAAAAGATTGAAAAATGTCGAAAAAATGCGAGAAGTTTTGAAGACAAACAATTCTCAGATGTTGTTCTTGTGATTGATGAACAAAAGTTCTATGTTGCAAAATTGGTTAGTTTTTTTTGTAGTTTGTAGTTTATAATCTCAAGTTTTCAGTTCCTCTCTTCCCAATCCCCCTACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCCATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGGAGAAATCGACAAAATCGTTGAAAGACAAACTGGAAATGGCTGGAAAATATAAATTGGACGCGTTGAGAGTGAGTTTGGTGCTTTTTTGAATAGAAACGAGCAATATGATTTTTTCAGAAAAGCTGCGTCTCTCGGATTCGAACAGTATCTGATATTCGTTCAGTGGCTCTGAAGAATCCCAGAGAAATGGACCATTTGATTCTTGCTGCTCTTTTTCAGAAGGTTTTAACTCTTGTTTGAACATTTTTTGACGAATTTTCTAAATAAAAATTAATTTTCTTCTTCTCTTGAAATTACCGTACACACTCTAATAGAACGCCACCCGGACCGTTCCCTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAATTTGTAAACTAGTAAAATGTTTATCATGATGTCAGCAACATTTTATGGCTGGCATTCTATTAGAGTGTTTACGGTA</canonical>
            <polymorphic>GGGATTGAAGATCGATACACCAAAAAAAGTTGAACATTCAAGAAGAGTTCATTTTGTAGAAACAAGAGTGGTACCTTCAGGAAAAGCTGTTGAAAAATCTTCAACATTCGAAAAAAGAGATTCGGAGCAAAAGATTGAAAAATGTCGAAAAAATGCGAGAAGTTTTGAAGACAAACAATTCTCAGATGTTGTTCTTGTGATTGATGAACAAAAGTTCTATGTTGCAAAATTGGTTAGTTTTTTTTGTAGTTTGTAGTTTATAATCTCAAGTTTTCAGTTCCTCTCTTCCCAATCCCCCTACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCCATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATAYGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGGAGAAATCGACAAAATCGTTGAAAGACAAACTGGAAATGGCTGGAAAATATAAATTGGACGCGTTGAGAGTGAGTTTGGTGCTTTTTTGAATAGAAACGAGCAATATGATTTTTTCAGAAAAGCTGCGTCTCTCGGATTCGAACAGTATCTGATATTCGTTCAGTGGCTCTGAAGAATCCCAGAGAAATGGACCATTTGATTCTTGCTGCTCTTTTTCAGAAGGTTTTAACTCTTGTTTGAACATTTTTTGACGAATTTTCTAAATAAAAATTAATTTTCTTCTTCTCTTGAAATTACCGTACACACTCTAATAGAACGCCACCCGGACCGTTCCCTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAATTTGTAAACTAGTAAAATGTTTATCATGATGTCAGCAACATTTTATGGCTGGCATTCTATTAGAGTGTTTACGGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGTACA</site>
                <isoschizomers>
                    <enzyme>AauI</enzyme>
                    <enzyme>Bsp1407I</enzyme>
                    <enzyme>BsrGI</enzyme>
                    <enzyme>SspBI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATTCAAATCCTCAAAACTT</pcr_primer_p1>
		<pcr_primer_p2>AATTTATATTTTCCAGCCATTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAAATTCAAATCCTCAAAACTTCCAATTCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCCATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGGAGAAATCGACAAAATCGTTGAAAGACAAACTGGAAATGGCTGGAAAATATAAATT</canonical_amplicon>
		<polymorphic_amplicon>CAAATTCAAATCCTCAAAACTTCCAATTCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCCATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATAYGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGGAGAAATCGACAAAATCGTTGAAAGACAAACTGGAAATGGCTGGAAAATATAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27415</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>102696</contig_pos>
        <strand>+</strand>
        <context>TTTTTCAGAA[A/G]GTTTTAACTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGAATCCCAGAGAAATGGACCATTTGATTCTTGCTGCTCTTTTTCAGAA</left_flank>
        <right_flank>GTTTTAACTCTTGTTTGAACATTTTTTGACGAATTTTCTAAATAAAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTCAGTTCCTCTCTTCCCAATCCCCCTACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCCATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGGAGAAATCGACAAAATCGTTGAAAGACAAACTGGAAATGGCTGGAAAATATAAATTGGACGCGTTGAGAGTGAGTTTGGTGCTTTTTTGAATAGAAACGAGCAATATGATTTTTTCAGAAAAGCTGCGTCTCTCGGATTCGAACAGTATCTGATATTCGTTCAGTGGCTCTGAAGAATCCCAGAGAAATGGACCATTTGATTCTTGCTGCTCTTTTTCAGAAGGTTTTAACTCTTGTTTGAACATTTTTTGACGAATTTTCTAAATAAAAATTAATTTTCTTCTTCTCTTGAAATTACCGTACACACTCTAATAGAACGCCACCCGGACCGTTCCCTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAATTTGTAAACTAGTAAAATGTTTATCATGATGTCAGCAACATTTTATGGCTGGCATTCTATTAGAGTGTTTACGGTAGACAGAACTTTCCAACTTATTTAAAAATCTCAAAATATTCTATTTGAATAGTTACGGTAGATCAAAACTATGTCAATTATTTTTGAAAACAAAAAAAACCGTTTTTGATCTACAGTATGATCGCTCATGAGAAAAAGTCATCGATTTTTTGGGGAATCTTTTTTTAATTCTCTAGGTTTTATTCAATTTTTTTCATTTTTTTTTAAATTACAATTCGCTAATTTTGGTACCAATTTAGAGGACTAGTTCTTATAATTCTAATTTTTCCC</canonical>
            <polymorphic>GTTTTCAGTTCCTCTCTTCCCAATCCCCCTACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCCATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGGAGAAATCGACAAAATCGTTGAAAGACAAACTGGAAATGGCTGGAAAATATAAATTGGACGCGTTGAGAGTGAGTTTGGTGCTTTTTTGAATAGAAACGAGCAATATGATTTTTTCAGAAAAGCTGCGTCTCTCGGATTCGAACAGTATCTGATATTCGTTCAGTGGCTCTGAAGAATCCCAGAGAAATGGACCATTTGATTCTTGCTGCTCTTTTTCAGAARGTTTTAACTCTTGTTTGAACATTTTTTGACGAATTTTCTAAATAAAAATTAATTTTCTTCTTCTCTTGAAATTACCGTACACACTCTAATAGAACGCCACCCGGACCGTTCCCTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAATTTGTAAACTAGTAAAATGTTTATCATGATGTCAGCAACATTTTATGGCTGGCATTCTATTAGAGTGTTTACGGTAGACAGAACTTTCCAACTTATTTAAAAATCTCAAAATATTCTATTTGAATAGTTACGGTAGATCAAAACTATGTCAATTATTTTTGAAAACAAAAAAAACCGTTTTTGATCTACAGTATGATCGCTCATGAGAAAAAGTCATCGATTTTTTGGGGAATCTTTTTTTAATTCTCTAGGTTTTATTCAATTTTTTTCATTTTTTTTTAAATTACAATTCGCTAATTTTGGTACCAATTTAGAGGACTAGTTCTTATAATTCTAATTTTTCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAATCCCAGAGAAATGGAC</pcr_primer_p1>
		<pcr_primer_p2>AAATAAGTTGGAAAGTTCTGTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>AGAATCCCAGAGAAATGGACCATTTGATTCTTGCTGCTCTTTTTCAGAAGGTTTTAACTCTTGTTTGAACATTTTTTGACGAATTTTCTAAATAAAAATTAATTTTCTTCTTCTCTTGAAATTACCGTACACACTCTAATAGAACGCCACCCGGACCGTTCCCTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAATTTGTAAACTAGTAAAATGTTTATCATGATGTCAGCAACATTTTATGGCTGGCATTCTATTAGAGTGTTTACGGTAGACAGAACTTTCCAACTTATTT</canonical_amplicon>
		<polymorphic_amplicon>AGAATCCCAGAGAAATGGACCATTTGATTCTTGCTGCTCTTTTTCAGAARGTTTTAACTCTTGTTTGAACATTTTTTGACGAATTTTCTAAATAAAAATTAATTTTCTTCTTCTCTTGAAATTACCGTACACACTCTAATAGAACGCCACCCGGACCGTTCCCTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAATTTGTAAACTAGTAAAATGTTTATCATGATGTCAGCAACATTTTATGGCTGGCATTCTATTAGAGTGTTTACGGTAGACAGAACTTTCCAACTTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27416</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>102726</contig_pos>
        <strand>+</strand>
        <context>CATTTTTTGA[C/G]GAATTTTCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTTGCTGCTCTTTTTCAGAAGGTTTTAACTCTTGTTTGAACATTTTTTGA</left_flank>
        <right_flank>GAATTTTCTAAATAAAAATTAATTTTCTTCTTCTCTTGAAATTACCGTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCCATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGGAGAAATCGACAAAATCGTTGAAAGACAAACTGGAAATGGCTGGAAAATATAAATTGGACGCGTTGAGAGTGAGTTTGGTGCTTTTTTGAATAGAAACGAGCAATATGATTTTTTCAGAAAAGCTGCGTCTCTCGGATTCGAACAGTATCTGATATTCGTTCAGTGGCTCTGAAGAATCCCAGAGAAATGGACCATTTGATTCTTGCTGCTCTTTTTCAGAAGGTTTTAACTCTTGTTTGAACATTTTTTGACGAATTTTCTAAATAAAAATTAATTTTCTTCTTCTCTTGAAATTACCGTACACACTCTAATAGAACGCCACCCGGACCGTTCCCTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAATTTGTAAACTAGTAAAATGTTTATCATGATGTCAGCAACATTTTATGGCTGGCATTCTATTAGAGTGTTTACGGTAGACAGAACTTTCCAACTTATTTAAAAATCTCAAAATATTCTATTTGAATAGTTACGGTAGATCAAAACTATGTCAATTATTTTTGAAAACAAAAAAAACCGTTTTTGATCTACAGTATGATCGCTCATGAGAAAAAGTCATCGATTTTTTGGGGAATCTTTTTTTAATTCTCTAGGTTTTATTCAATTTTTTTCATTTTTTTTTAAATTACAATTCGCTAATTTTGGTACCAATTTAGAGGACTAGTTCTTATAATTCTAATTTTTCCCTATTTTTTCATATTTCTCCCTGAATCCCAT</canonical>
            <polymorphic>ACTTTGCTAATCTCTTCTCCGAAAATTCTGGAAAATCGGAAATCAAACTTTCAAATTCAAATCCTCAAAACTTCCAATTCTTCCTAGAAATCCTTTACGGAGAACCTGGACCAGATGGTGGGTTACTGTACCTCCCTCCACCCATAATCCTGAGAATATTCCAGAAGAAACTGTAGAAGGAATCTTATCAATTGCTGATATGTACAACACCCCTACTATCATCAAAAAATGTGAAGAATATCTTTTGGAGAAATCGACAAAATCGTTGAAAGACAAACTGGAAATGGCTGGAAAATATAAATTGGACGCGTTGAGAGTGAGTTTGGTGCTTTTTTGAATAGAAACGAGCAATATGATTTTTTCAGAAAAGCTGCGTCTCTCGGATTCGAACAGTATCTGATATTCGTTCAGTGGCTCTGAAGAATCCCAGAGAAATGGACCATTTGATTCTTGCTGCTCTTTTTCAGAAGGTTTTAACTCTTGTTTGAACATTTTTTGASGAATTTTCTAAATAAAAATTAATTTTCTTCTTCTCTTGAAATTACCGTACACACTCTAATAGAACGCCACCCGGACCGTTCCCTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAATTTGTAAACTAGTAAAATGTTTATCATGATGTCAGCAACATTTTATGGCTGGCATTCTATTAGAGTGTTTACGGTAGACAGAACTTTCCAACTTATTTAAAAATCTCAAAATATTCTATTTGAATAGTTACGGTAGATCAAAACTATGTCAATTATTTTTGAAAACAAAAAAAACCGTTTTTGATCTACAGTATGATCGCTCATGAGAAAAAGTCATCGATTTTTTGGGGAATCTTTTTTTAATTCTCTAGGTTTTATTCAATTTTTTTCATTTTTTTTTAAATTACAATTCGCTAATTTTGGTACCAATTTAGAGGACTAGTTCTTATAATTCTAATTTTTCCCTATTTTTTCATATTTCTCCCTGAATCCCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTGCTGCTCTTTTTCA</pcr_primer_p1>
		<pcr_primer_p2>AAATAAGTTGGAAAGTTCTGTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTGCTGCTCTTTTTCAGAAGGTTTTAACTCTTGTTTGAACATTTTTTGACGAATTTTCTAAATAAAAATTAATTTTCTTCTTCTCTTGAAATTACCGTACACACTCTAATAGAACGCCACCCGGACCGTTCCCTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAATTTGTAAACTAGTAAAATGTTTATCATGATGTCAGCAACATTTTATGGCTGGCATTCTATTAGAGTGTTTACGGTAGACAGAACTTTCCAACTTATTT</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTGCTGCTCTTTTTCAGAAGGTTTTAACTCTTGTTTGAACATTTTTTGASGAATTTTCTAAATAAAAATTAATTTTCTTCTTCTCTTGAAATTACCGTACACACTCTAATAGAACGCCACCCGGACCGTTCCCTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAATTTGTAAACTAGTAAAATGTTTATCATGATGTCAGCAACATTTTATGGCTGGCATTCTATTAGAGTGTTTACGGTAGACAGAACTTTCCAACTTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27417</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>110837</contig_pos>
        <strand>+</strand>
        <context>AGCTTTGGAA[G/T]KGGAAACKGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAA</left_flank>
        <right_flank>TGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGGACTATAAAAATATTGAATTGAAAAATGAACTTCACTGGGGGTACCATAGAGTAAGACATTCGTTTCGATTCGAAAAGAAAGGCAATAATTTTCAGATTAGTAAATTCTTTAACGAACGAAGAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCAC</canonical>
            <polymorphic>AAGGACTATAAAAATATTGAATTGAAAAATGAACTTCACTGGGGGTACCATAGAGTAAGACATTCGTTTCGATTCGAAAAGAAAGGCAATAATTTTCAGATTAGTAAATTCTTTAACGAACGAAGAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAKTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>211 125 118 92 69 60 59 54 47 45 38 28 19 18 14 2 1</canonical_bands>
                <polymorphic_bands>211 125 118 92 69 60 59 59 54 47 38 28 19 18 2 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAAAAGCTTTCCAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>AAACATTCTCTTTTTGTTCGATA</pcr_primer_p2>
		<pcr_amplicon_size>296</pcr_amplicon_size>
		<canonical_amplicon>GGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAKTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27418</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>110838</contig_pos>
        <strand>+</strand>
        <context>GCTTTGGAAK[G/T]GGAAACKGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAG</left_flank>
        <right_flank>GGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGACTATAAAAATATTGAATTGAAAAATGAACTTCACTGGGGGTACCATAGAGTAAGACATTCGTTTCGATTCGAAAAGAAAGGCAATAATTTTCAGATTAGTAAATTCTTTAACGAACGAAGAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACG</canonical>
            <polymorphic>AGGACTATAAAAATATTGAATTGAAAAATGAACTTCACTGGGGGTACCATAGAGTAAGACATTCGTTTCGATTCGAAAAGAAAGGCAATAATTTTCAGATTAGTAAATTCTTTAACGAACGAAGAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGKGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>211 125 118 92 69 60 59 54 47 45 37 28 19 18 14 2 2</canonical_bands>
                <polymorphic_bands>211 125 118 92 69 60 59 59 54 47 37 28 19 18 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAAAAGCTTTCCAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>AAACATTCTCTTTTTGTTCGATA</pcr_primer_p2>
		<pcr_amplicon_size>296</pcr_amplicon_size>
		<canonical_amplicon>GGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGKGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27419</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>110845</contig_pos>
        <strand>+</strand>
        <context>AAKKGGAAAC[G/T]GGAKMCTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAAC</left_flank>
        <right_flank>GGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAAATATTGAATTGAAAAATGAACTTCACTGGGGGTACCATAGAGTAAGACATTCGTTTCGATTCGAAAAGAAAGGCAATAATTTTCAGATTAGTAAATTCTTTAACGAACGAAGAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAA</canonical>
            <polymorphic>TAAAAATATTGAATTGAAAAATGAACTTCACTGGGGGTACCATAGAGTAAGACATTCGTTTCGATTCGAAAAGAAAGGCAATAATTTTCAGATTAGTAAATTCTTTAACGAACGAAGAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACKGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAAAGCTTTCCAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>AAACATTCTCTTTTTGTTCGATA</pcr_primer_p2>
		<pcr_amplicon_size>296</pcr_amplicon_size>
		<canonical_amplicon>GGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACKGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27420</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>110849</contig_pos>
        <strand>+</strand>
        <context>GGAAACKGGA[G/T]MCTCTTGGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGA</left_flank>
        <right_flank>CCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATATTGAATTGAAAAATGAACTTCACTGGGGGTACCATAGAGTAAGACATTCGTTTCGATTCGAAAAGAAAGGCAATAATTTTCAGATTAGTAAATTCTTTAACGAACGAAGAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGA</canonical>
            <polymorphic>AATATTGAATTGAAAAATGAACTTCACTGGGGGTACCATAGAGTAAGACATTCGTTTCGATTCGAAAAGAAAGGCAATAATTTTCAGATTAGTAAATTCTTTAACGAACGAAGAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAKCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>138 130 123 98 88 73 66 57 49 41 39 37 21 19 11 5 5</canonical_bands>
                <polymorphic_bands>138 130 123 98 88 87 73 57 49 41 39 37 19 11 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACAGCAATATTTTGGAACTC</pcr_primer_p1>
		<pcr_primer_p2>AAACATTCTCTTTTTGTTCGATA</pcr_primer_p2>
		<pcr_amplicon_size>280</pcr_amplicon_size>
		<canonical_amplicon>AAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>AAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAKCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27421</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>110850</contig_pos>
        <strand>+</strand>
        <context>GAAACKGGAK[A/C]CTCTTGGAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAG</left_flank>
        <right_flank>CTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATTGAATTGAAAAATGAACTTCACTGGGGGTACCATAGAGTAAGACATTCGTTTCGATTCGAAAAGAAAGGCAATAATTTTCAGATTAGTAAATTCTTTAACGAACGAAGAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAG</canonical>
            <polymorphic>ATATTGAATTGAAAAATGAACTTCACTGGGGGTACCATAGAGTAAGACATTCGTTTCGATTCGAAAAGAAAGGCAATAATTTTCAGATTAGTAAATTCTTTAACGAACGAAGAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGMCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>359 342 143 123 33</canonical_bands>
                <polymorphic_bands>701 143 123 33</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>137 130 123 98 88 73 66 57 50 41 39 37 21 19 11 5 5</canonical_bands>
                <polymorphic_bands>137 130 123 98 88 87 73 57 50 41 39 37 19 11 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACAGCAATATTTTGGAACTC</pcr_primer_p1>
		<pcr_primer_p2>AAACATTCTCTTTTTGTTCGATA</pcr_primer_p2>
		<pcr_amplicon_size>280</pcr_amplicon_size>
		<canonical_amplicon>AAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>AAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGMCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27422</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>110863</contig_pos>
        <strand>+</strand>
        <context>CTTGGAACAA[G/T]GTAAGSATTY</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAA</left_flank>
        <right_flank>GTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGAACTTCACTGGGGGTACCATAGAGTAAGACATTCGTTTCGATTCGAAAAGAAAGGCAATAATTTTCAGATTAGTAAATTCTTTAACGAACGAAGAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGA</canonical>
            <polymorphic>AAATGAACTTCACTGGGGGTACCATAGAGTAAGACATTCGTTTCGATTCGAAAAGAAAGGCAATAATTTTCAGATTAGTAAATTCTTTAACGAACGAAGAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAKGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTCGAAGTGAAGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAACATTCTCTTTTTGTTCGATA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAKGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27423</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>110869</contig_pos>
        <strand>+</strand>
        <context>ACAAKGTAAG[C/G]ATTYAAATAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAG</left_flank>
        <right_flank>ATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTCACTGGGGGTACCATAGAGTAAGACATTCGTTTCGATTCGAAAAGAAAGGCAATAATTTTCAGATTAGTAAATTCTTTAACGAACGAAGAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGA</canonical>
            <polymorphic>ACTTCACTGGGGGTACCATAGAGTAAGACATTCGTTTCGATTCGAAAAGAAAGGCAATAATTTTCAGATTAGTAAATTCTTTAACGAACGAAGAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGSATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTCGAAGTGAAGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAACATTCTCTTTTTGTTCGATA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGSATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27424</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>110873</contig_pos>
        <strand>+</strand>
        <context>KGTAAGSATT[C/T]AAATATTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATT</left_flank>
        <right_flank>AAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTGGGGGTACCATAGAGTAAGACATTCGTTTCGATTCGAAAAGAAAGGCAATAATTTTCAGATTAGTAAATTCTTTAACGAACGAAGAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAG</canonical>
            <polymorphic>CACTGGGGGTACCATAGAGTAAGACATTCGTTTCGATTCGAAAAGAAAGGCAATAATTTTCAGATTAGTAAATTCTTTAACGAACGAAGAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTYAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTCGAAGTGAAGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAACATTCTCTTTTTGTTCGATA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTYAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27425</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>110901</contig_pos>
        <strand>+</strand>
        <context>GAAATTATTA[A/T]TTTACAWATA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTA</left_flank>
        <right_flank>TTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTTTCGATTCGAAAAGAAAGGCAATAATTTTCAGATTAGTAAATTCTTTAACGAACGAAGAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAA</canonical>
            <polymorphic>CGTTTCGATTCGAAAAGAAAGGCAATAATTTTCAGATTAGTAAATTCTTTAACGAACGAAGAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTAWTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTCGAAGTGAAGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAACATTCTCTTTTTGTTCGATA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTAWTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27426</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>110908</contig_pos>
        <strand>+</strand>
        <context>TTAWTTTACA[A/T]ATATTAGYWT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACA</left_flank>
        <right_flank>ATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCGAAAAGAAAGGCAATAATTTTCAGATTAGTAAATTCTTTAACGAACGAAGAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACC</canonical>
            <polymorphic>ATTCGAAAAGAAAGGCAATAATTTTCAGATTAGTAAATTCTTTAACGAACGAAGAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAWATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTCGAAGTGAAGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAACATTCTCTTTTTGTTCGATA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAWATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27427</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>110916</contig_pos>
        <strand>+</strand>
        <context>CAWATATTAG[C/T]WTGYCTTAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAG</left_flank>
        <right_flank>TTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAAGGCAATAATTTTCAGATTAGTAAATTCTTTAACGAACGAAGAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATC</canonical>
            <polymorphic>AGAAAGGCAATAATTTTCAGATTAGTAAATTCTTTAACGAACGAAGAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGYTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>207 147 130 123 103 87 76 40 39 37 11</canonical_bands>
                <polymorphic_bands>294 147 130 123 103 76 40 39 37 11</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>130 123 98 88 76 73 71 66 57 41 40 39 37 21 19 11 5 5</canonical_bands>
                <polymorphic_bands>130 123 98 88 76 73 71 71 57 41 40 39 37 21 19 11 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACTCGAAGTGAAGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAACATTCTCTTTTTGTTCGATA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGYTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27428</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>110917</contig_pos>
        <strand>+</strand>
        <context>AWATATTAGY[A/T]TGYCTTAAAR</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGC</left_flank>
        <right_flank>TGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAGGCAATAATTTTCAGATTAGTAAATTCTTTAACGAACGAAGAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCA</canonical>
            <polymorphic>GAAAGGCAATAATTTTCAGATTAGTAAATTCTTTAACGAACGAAGAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCWTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>207 146 130 123 103 87 76 41 39 37 11</canonical_bands>
                <polymorphic_bands>294 146 130 123 103 76 41 39 37 11</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>130 123 98 88 76 73 70 66 57 41 41 39 37 21 19 11 5 5</canonical_bands>
                <polymorphic_bands>130 123 98 88 76 73 71 70 57 41 41 39 37 21 19 11 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACTCGAAGTGAAGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAACATTCTCTTTTTGTTCGATA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCWTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27429</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>110920</contig_pos>
        <strand>+</strand>
        <context>TATTAGYWTG[C/T]CTTAAARACA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTG</left_flank>
        <right_flank>CTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGCAATAATTTTCAGATTAGTAAATTCTTTAACGAACGAAGAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAAT</canonical>
            <polymorphic>AGGCAATAATTTTCAGATTAGTAAATTCTTTAACGAACGAAGAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGYCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>130 123 98 88 76 73 67 66 57 44 41 39 37 21 19 11 5 5</canonical_bands>
                <polymorphic_bands>130 123 98 88 78 76 67 66 57 44 41 39 37 21 19 11 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACTCGAAGTGAAGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAACATTCTCTTTTTGTTCGATA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGYCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27430</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>110927</contig_pos>
        <strand>+</strand>
        <context>WTGYCTTAAA[A/G]ACAAAAGGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAA</left_flank>
        <right_flank>ACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTCAGATTAGTAAATTCTTTAACGAACGAAGAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAA</canonical>
            <polymorphic>AATTTTCAGATTAGTAAATTCTTTAACGAACGAAGAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAARACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTCGAAGTGAAGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAACATTCTCTTTTTGTTCGATA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAARACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27431</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>110939</contig_pos>
        <strand>+</strand>
        <context>CAAAAGGAAA[A/G]ARACTCTGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAA</left_flank>
        <right_flank>ATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTAAATTCTTTAACGAACGAAGAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTC</canonical>
            <polymorphic>AGTAAATTCTTTAACGAACGAAGAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAARATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTCGAAGTGAAGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAACATTCTCTTTTTGTTCGATA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAARATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27432</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>110941</contig_pos>
        <strand>+</strand>
        <context>AAAGGAAARA[A/G]ACTCTGGAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAA</left_flank>
        <right_flank>ACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATTCTTTAACGAACGAAGAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAA</canonical>
            <polymorphic>TAAATTCTTTAACGAACGAAGAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAARACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTCGAAGTGAAGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAACATTCTCTTTTTGTTCGATA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAARACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27433</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>110961</contig_pos>
        <strand>+</strand>
        <context>GCATACTTGA[A/C]AAARGAAAYT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGA</left_flank>
        <right_flank>AAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGG</canonical>
            <polymorphic>GAAAGCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGAMAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTCGAAGTGAAGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAACATTCTCTTTTTGTTCGATA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGAMAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27434</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>110965</contig_pos>
        <strand>+</strand>
        <context>ACTTGAMAAA[A/G]GAAAYTTCGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAA</left_flank>
        <right_flank>GAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATT</canonical>
            <polymorphic>GCAAAATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAARGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTCGAAGTGAAGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAACATTCTCTTTTTGTTCGATA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAARGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27435</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>110970</contig_pos>
        <strand>+</strand>
        <context>AMAAARGAAA[C/T]TTCGTTCTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAA</left_flank>
        <right_flank>TTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAA</canonical>
            <polymorphic>ATAGGATAAGCAATGGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAAYTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTCGAAGTGAAGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAACATTCTCTTTTTGTTCGATA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAAYTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27436</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>110984</contig_pos>
        <strand>+</strand>
        <context>GTTCTTGCCT[A/T]WMGACMTGGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCT</left_flank>
        <right_flank>ATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAA</canonical>
            <polymorphic>GGGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTWATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTCGAAGTGAAGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAACATTCTCTTTTTGTTCGATA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTWATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27437</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>110985</contig_pos>
        <strand>+</strand>
        <context>TTCTTGCCTW[A/T]MGACMTGGCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTA</left_flank>
        <right_flank>TGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAAT</canonical>
            <polymorphic>GGCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAWTGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTCGAAGTGAAGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAACATTCTCTTTTTGTTCGATA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAWTGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27438</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>110986</contig_pos>
        <strand>+</strand>
        <context>TCTTGCCTWW[A/C]GACMTGGCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAA</left_flank>
        <right_flank>GACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATT</canonical>
            <polymorphic>GCCAAAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAAMGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTCGAAGTGAAGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAACATTCTCTTTTTGTTCGATA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAAMGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27439</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>110990</contig_pos>
        <strand>+</strand>
        <context>GCCTWWMGAC[A/C]TGGCCAATTW</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGAC</left_flank>
        <right_flank>TGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGAT</canonical>
            <polymorphic>AAAGTAAGCACCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACMTGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>256 245 171 106 104 87 31</canonical_bands>
                <polymorphic_bands>360 245 171 106 87 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACTCGAAGTGAAGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAACATTCTCTTTTTGTTCGATA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACMTGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27440</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>111000</contig_pos>
        <strand>+</strand>
        <context>MTGGCCAATT[A/T]TGAGAGGAMT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATT</left_flank>
        <right_flank>TGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGG</canonical>
            <polymorphic>CCCGGGCCCAAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTWTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTCGAAGTGAAGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAACATTCTCTTTTTGTTCGATA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTWTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27441</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>111009</contig_pos>
        <strand>+</strand>
        <context>TWTGAGAGGA[A/C]TTACARRAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGA</left_flank>
        <right_flank>TTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCG</canonical>
            <polymorphic>AAAGTAAGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGAMTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTCGAAGTGAAGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAACATTCTCTTTTTGTTCGATA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGAMTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27442</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>111015</contig_pos>
        <strand>+</strand>
        <context>AGGAMTTACA[A/G]RAAGTAYGAY</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACA</left_flank>
        <right_flank>AAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAG</canonical>
            <polymorphic>AGCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACARAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTCGAAGTGAAGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAACATTCTCTTTTTGTTCGATA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACARAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27443</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>111016</contig_pos>
        <strand>+</strand>
        <context>GGAMTTACAR[A/G]AAGTAYGAYA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAA</left_flank>
        <right_flank>AAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGA</canonical>
            <polymorphic>GCACAATAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAARAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTCGAAGTGAAGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAACATTCTCTTTTTGTTCGATA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAARAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27444</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>111022</contig_pos>
        <strand>+</strand>
        <context>ACARRAAGTA[C/T]GAYAGACCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTA</left_flank>
        <right_flank>GACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCA</canonical>
            <polymorphic>TAGGATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTAYGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 367 131</canonical_bands>
                <polymorphic_bands>869 131</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACTCGAAGTGAAGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAACATTCTCTTTTTGTTCGATA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTAYGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27445</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>111025</contig_pos>
        <strand>+</strand>
        <context>RRAAGTAYGA[C/T]AGACCCATCK</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGA</left_flank>
        <right_flank>AGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGG</canonical>
            <polymorphic>GATTTCGATTGGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGAYAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTCGAAGTGAAGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>TCAAATAATCTGATAGCTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>336</pcr_amplicon_size>
		<canonical_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGA</canonical_amplicon>
		<polymorphic_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGAYAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27446</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>111035</contig_pos>
        <strand>+</strand>
        <context>YAGACCCATC[G/T]GCTTCGATGC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATC</left_flank>
        <right_flank>GCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAG</canonical>
            <polymorphic>GGCGATTCTCCACTCCCCGAAGAAGAAGCTCAGCCAATTCTCATGGATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCKGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTCGAAGTGAAGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>TCAAATAATCTGATAGCTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>336</pcr_amplicon_size>
		<canonical_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGA</canonical_amplicon>
		<polymorphic_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCKGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27447</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>111080</contig_pos>
        <strand>+</strand>
        <context>GAATGTTTCC[C/G]GCTATAATGT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCC</left_flank>
        <right_flank>GCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAA</canonical>
            <polymorphic>GATATTTTTAGGAAAAATCCACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCSGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>498 180 150 131 41</canonical_bands>
                <polymorphic_bands>629 180 150 41</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>130 123 88 86 80 77 76 73 66 47 41 39 37 21 11 5</canonical_bands>
                <polymorphic_bands>130 129 123 86 80 77 76 73 66 47 39 37 21 11 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACTCGAAGTGAAGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>TCAAATAATCTGATAGCTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>336</pcr_amplicon_size>
		<canonical_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGA</canonical_amplicon>
		<polymorphic_amplicon>GAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCSGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27448</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>111100</contig_pos>
        <strand>+</strand>
        <context>TAAGTGGAAA[A/G]AATTGRATWA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAA</left_flank>
        <right_flank>AATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGC</canonical>
            <polymorphic>ACTGGTCCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAARAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTGTATCGAACAAAAAGAG</pcr_primer_p1>
		<pcr_primer_p2>CTATGCTCTGAATCCATCTGATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</canonical_amplicon>
		<polymorphic_amplicon>CGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAARAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27449</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>111106</contig_pos>
        <strand>+</strand>
        <context>GAAARAATTG[A/G]ATWATCRAYA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTG</left_flank>
        <right_flank>ATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGCCCACCA</canonical>
            <polymorphic>CCATGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGRATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGCCCACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATCGAACAAAAAGAGAATGT</pcr_primer_p1>
		<pcr_primer_p2>CTATGCTCTGAATCCATCTGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</canonical_amplicon>
		<polymorphic_amplicon>TGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGRATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27450</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>111109</contig_pos>
        <strand>+</strand>
        <context>ARAATTGRAT[A/T]ATCRAYATCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGAT</left_flank>
        <right_flank>ATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGCCCACCAAGA</canonical>
            <polymorphic>TGATTACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATWATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGCCCACCAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATCGAACAAAAAGAGAATGT</pcr_primer_p1>
		<pcr_primer_p2>CTATGCTCTGAATCCATCTGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</canonical_amplicon>
		<polymorphic_amplicon>TGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATWATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27451</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>111113</contig_pos>
        <strand>+</strand>
        <context>TTGRATWATC[A/G]AYATCAAAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATC</left_flank>
        <right_flank>ATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGCCCACCAAGAACCT</canonical>
            <polymorphic>TACAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCRATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGCCCACCAAGAACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATCGAACAAAAAGAGAATGT</pcr_primer_p1>
		<pcr_primer_p2>CTATGCTCTGAATCCATCTGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</canonical_amplicon>
		<polymorphic_amplicon>TGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCRATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27452</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>111115</contig_pos>
        <strand>+</strand>
        <context>GRATWATCRA[C/T]ATCAAAGCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAA</left_flank>
        <right_flank>ATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGCCCACCAAGAACCTGT</canonical>
            <polymorphic>CAAGAACGTTGAACTCAAAAATCAGATTCAGTGGACGTACCGAAGAGTAAGCTTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAAYATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGCCCACCAAGAACCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATCGAACAAAAAGAGAATGT</pcr_primer_p1>
		<pcr_primer_p2>CTATGCTCTGAATCCATCTGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</canonical_amplicon>
		<polymorphic_amplicon>TGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAAYATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27453</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>111167</contig_pos>
        <strand>+</strand>
        <context>ACAGAGTGTG[C/T]WRGCTAARMT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTG</left_flank>
        <right_flank>AAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGCCCACCAAGAACCTGTCGTAGACGTAGAACAAGAGGAAGGGTCAGTAGATAGACAGGATGCTCATGAA</canonical>
            <polymorphic>TTCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGYAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGCCCACCAAGAACCTGTCGTAGACGTAGAACAAGAGGAAGGGTCAGTAGATAGACAGGATGCTCATGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>377 187 164 150 122</canonical_bands>
                <polymorphic_bands>377 309 164 150</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTATCGAACAAAAAGAGAATGT</pcr_primer_p1>
		<pcr_primer_p2>CTATGCTCTGAATCCATCTGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</canonical_amplicon>
		<polymorphic_amplicon>TGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGYAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27454</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>111168</contig_pos>
        <strand>+</strand>
        <context>CAGAGTGTGY[A/T]RGCTAARMTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGC</left_flank>
        <right_flank>AGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGCCCACCAAGAACCTGTCGTAGACGTAGAACAAGAGGAAGGGTCAGTAGATAGACAGGATGCTCATGAAG</canonical>
            <polymorphic>TCGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCWAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGCCCACCAAGAACCTGTCGTAGACGTAGAACAAGAGGAAGGGTCAGTAGATAGACAGGATGCTCATGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>376 187 165 150 122</canonical_bands>
                <polymorphic_bands>376 309 165 150</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTATCGAACAAAAAGAGAATGT</pcr_primer_p1>
		<pcr_primer_p2>CTATGCTCTGAATCCATCTGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</canonical_amplicon>
		<polymorphic_amplicon>TGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCWAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27455</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>111169</contig_pos>
        <strand>+</strand>
        <context>AGAGTGTGYW[A/G]GCTAARMTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCA</left_flank>
        <right_flank>GCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGCCCACCAAGAACCTGTCGTAGACGTAGAACAAGAGGAAGGGTCAGTAGATAGACAGGATGCTCATGAAGA</canonical>
            <polymorphic>CGCATCGTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCARGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGCCCACCAAGAACCTGTCGTAGACGTAGAACAAGAGGAAGGGTCAGTAGATAGACAGGATGCTCATGAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>293 207 130 120 87 76 39 37 11</canonical_bands>
                <polymorphic_bands>293 207 167 120 87 76 39 11</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>130 120 88 87 77 76 73 73 66 47 41 39 37 21 11 9 5</canonical_bands>
                <polymorphic_bands>167 120 88 87 77 76 73 73 66 47 41 39 21 11 9 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTATCGAACAAAAAGAGAATGT</pcr_primer_p1>
		<pcr_primer_p2>CTATGCTCTGAATCCATCTGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</canonical_amplicon>
		<polymorphic_amplicon>TGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCARGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27456</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>111175</contig_pos>
        <strand>+</strand>
        <context>TGYWRGCTAA[A/G]MTTCGGAARG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAA</left_flank>
        <right_flank>CTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGCCCACCAAGAACCTGTCGTAGACGTAGAACAAGAGGAAGGGTCAGTAGATAGACAGGATGCTCATGAAGAATATCA</canonical>
            <polymorphic>GTTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAARCTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGCCCACCAAGAACCTGTCGTAGACGTAGAACAAGAGGAAGGGTCAGTAGATAGACAGGATGCTCATGAAGAATATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATCGAACAAAAAGAGAATGT</pcr_primer_p1>
		<pcr_primer_p2>CTATGCTCTGAATCCATCTGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</canonical_amplicon>
		<polymorphic_amplicon>TGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAARCTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27457</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>111176</contig_pos>
        <strand>+</strand>
        <context>GYWRGCTAAR[A/C]TTCGGAARGR</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAA</left_flank>
        <right_flank>TTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGCCCACCAAGAACCTGTCGTAGACGTAGAACAAGAGGAAGGGTCAGTAGATAGACAGGATGCTCATGAAGAATATCAG</canonical>
            <polymorphic>TTGAGATTTAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAAMTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGCCCACCAAGAACCTGTCGTAGACGTAGAACAAGAGGAAGGGTCAGTAGATAGACAGGATGCTCATGAAGAATATCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATCGAACAAAAAGAGAATGT</pcr_primer_p1>
		<pcr_primer_p2>CTATGCTCTGAATCCATCTGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</canonical_amplicon>
		<polymorphic_amplicon>TGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAAMTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27458</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>111184</contig_pos>
        <strand>+</strand>
        <context>ARMTTCGGAA[A/G]GRGARGGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAA</left_flank>
        <right_flank>GAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGCCCACCAAGAACCTGTCGTAGACGTAGAACAAGAGGAAGGGTCAGTAGATAGACAGGATGCTCATGAAGAATATCAGATTGAACC</canonical>
            <polymorphic>TAATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAARGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGCCCACCAAGAACCTGTCGTAGACGTAGAACAAGAGGAAGGGTCAGTAGATAGACAGGATGCTCATGAAGAATATCAGATTGAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATCGAACAAAAAGAGAATGT</pcr_primer_p1>
		<pcr_primer_p2>CTATGCTCTGAATCCATCTGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</canonical_amplicon>
		<polymorphic_amplicon>TGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAARGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27459</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>111186</contig_pos>
        <strand>+</strand>
        <context>MTTCGGAARG[A/G]GARGGAAGSC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGG</left_flank>
        <right_flank>GAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGCCCACCAAGAACCTGTCGTAGACGTAGAACAAGAGGAAGGGTCAGTAGATAGACAGGATGCTCATGAAGAATATCAGATTGAACCGG</canonical>
            <polymorphic>ATTTTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGRGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGCCCACCAAGAACCTGTCGTAGACGTAGAACAAGAGGAAGGGTCAGTAGATAGACAGGATGCTCATGAAGAATATCAGATTGAACCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATCGAACAAAAAGAGAATGT</pcr_primer_p1>
		<pcr_primer_p2>CTATGCTCTGAATCCATCTGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</canonical_amplicon>
		<polymorphic_amplicon>TGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGRGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27460</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>111189</contig_pos>
        <strand>+</strand>
        <context>CGGAARGRGA[A/G]GGAAGSCGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGA</left_flank>
        <right_flank>GGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGCCCACCAAGAACCTGTCGTAGACGTAGAACAAGAGGAAGGGTCAGTAGATAGACAGGATGCTCATGAAGAATATCAGATTGAACCGGAAC</canonical>
            <polymorphic>TTTATTTATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGARGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGCCCACCAAGAACCTGTCGTAGACGTAGAACAAGAGGAAGGGTCAGTAGATAGACAGGATGCTCATGAAGAATATCAGATTGAACCGGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATCGAACAAAAAGAGAATGT</pcr_primer_p1>
		<pcr_primer_p2>CTATGCTCTGAATCCATCTGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</canonical_amplicon>
		<polymorphic_amplicon>TGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGARGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27461</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>111195</contig_pos>
        <strand>+</strand>
        <context>GRGARGGAAG[C/G]CGTCMAKRTG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAG</left_flank>
        <right_flank>CGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGCCCACCAAGAACCTGTCGTAGACGTAGAACAAGAGGAAGGGTCAGTAGATAGACAGGATGCTCATGAAGAATATCAGATTGAACCGGAACTGAACT</canonical>
            <polymorphic>TATTGAAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGSCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGCCCACCAAGAACCTGTCGTAGACGTAGAACAAGAGGAAGGGTCAGTAGATAGACAGGATGCTCATGAAGAATATCAGATTGAACCGGAACTGAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>500 420 80</canonical_bands>
                <polymorphic_bands>920 80</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTATCGAACAAAAAGAGAATGT</pcr_primer_p1>
		<pcr_primer_p2>CTATGCTCTGAATCCATCTGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</canonical_amplicon>
		<polymorphic_amplicon>TGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGSCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27462</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>111200</contig_pos>
        <strand>+</strand>
        <context>GGAAGSCGTC[A/C]AKRTGGAACC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTC</left_flank>
        <right_flank>AGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGCCCACCAAGAACCTGTCGTAGACGTAGAACAAGAGGAAGGGTCAGTAGATAGACAGGATGCTCATGAAGAATATCAGATTGAACCGGAACTGAACTATCAC</canonical>
            <polymorphic>AAACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCMAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGCCCACCAAGAACCTGTCGTAGACGTAGAACAAGAGGAAGGGTCAGTAGATAGACAGGATGCTCATGAAGAATATCAGATTGAACCGGAACTGAACTATCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATCGAACAAAAAGAGAATGT</pcr_primer_p1>
		<pcr_primer_p2>CTATGCTCTGAATCCATCTGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</canonical_amplicon>
		<polymorphic_amplicon>TGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCMAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27463</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>111202</contig_pos>
        <strand>+</strand>
        <context>AAGSCGTCMA[G/T]RTGGAACCGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCA</left_flank>
        <right_flank>ATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGCCCACCAAGAACCTGTCGTAGACGTAGAACAAGAGGAAGGGTCAGTAGATAGACAGGATGCTCATGAAGAATATCAGATTGAACCGGAACTGAACTATCACAT</canonical>
            <polymorphic>ACCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAKATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGCCCACCAAGAACCTGTCGTAGACGTAGAACAAGAGGAAGGGTCAGTAGATAGACAGGATGCTCATGAAGAATATCAGATTGAACCGGAACTGAACTATCACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>254 249 232 123 46 45 40 11</canonical_bands>
                <polymorphic_bands>300 249 232 123 45 40 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTATCGAACAAAAAGAGAATGT</pcr_primer_p1>
		<pcr_primer_p2>CTATGCTCTGAATCCATCTGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</canonical_amplicon>
		<polymorphic_amplicon>TGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAKATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27464</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>111203</contig_pos>
        <strand>+</strand>
        <context>AGSCGTCMAK[A/G]TGGAACCGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAG</left_flank>
        <right_flank>TGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGCCCACCAAGAACCTGTCGTAGACGTAGAACAAGAGGAAGGGTCAGTAGATAGACAGGATGCTCATGAAGAATATCAGATTGAACCGGAACTGAACTATCACATT</canonical>
            <polymorphic>CCTACAGATCGAGAGTTGGTTCGTTCGACAACGCAAGTCAAATCAGCAAGAGAAACTTGATCACTTCAATGACGTCATGGAAAAAGCTTTCCAAAAACAGCAATATTTTGGAACTCGAAGTGAAGCTTTGGAAGTGGAAACTGGAGCCTCTTGGAACAAGGTAAGCATTCAAATATTTTCACATGCTGAAATTATTATTTTACAGATATTAGCTTGGCTTAAAAACAAAAGGAAAAATACTCTGGAAGCATACTTGACAAAAGAAACTTCGTTCTTGCCTAATGACATGGCCAATTTTGAGAGGATTTACAAAAAGTACGACAGACCCATCTGCTTCGATGCAGTTCGTTGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGRTGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAGCTTCCAACTAGATGCTCACCAAGAAGATGAAGACCACGGGGAAAAAAGAGGTGCAGAAGAGGATACTGATGAGGAGCTGGAAGAAGAACCGGTGGATCAAAGTGAACCAAACAATCAAATGGGCCAAGAACCTATTGTCAACCGAGAAGCGGGGGAACTGGAATTTGAAAATGATGACATTGAATTCGATAATCAAGAGGCTGCAGTCGTCGAAGAACATCATGGACGTGTGGAGGGTCCGGAGGTAGACCAACAAGTCCCTGAACAGCAAGTGACAGAACAAGAGGCCCAACTGGCTGCCCACCAAGAACCTGTCGTAGACGTAGAACAAGAGGAAGGGTCAGTAGATAGACAGGATGCTCATGAAGAATATCAGATTGAACCGGAACTGAACTATCACATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>254 249 232 123 46 45 41 10</canonical_bands>
                <polymorphic_bands>300 249 232 123 45 41 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTATCGAACAAAAAGAGAATGT</pcr_primer_p1>
		<pcr_primer_p2>CTATGCTCTGAATCCATCTGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGATGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</canonical_amplicon>
		<polymorphic_amplicon>TGTATCGAACAAAAAGAGAATGTTTCCGGCTATAATGTAAGTGGAAAGAATTGGATAATCAATATCAAAGCTTTTTTTCAGCTATCAGATTATTTGATGGACCGACAGAGTGTGCAAGCTAAACTTCGGAAGGAGAAGGAAGGCGTCCAGRTGGAACCGGAAGAGGAGGAATACGAAGATGAACAGGATGCTCATGAAGAGGATCACATTGAGCAGGATTTGGACTATCAGATGGATTCAGAGCATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27465</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>223873</contig_pos>
        <strand>+</strand>
        <context>TTTTTGTTTC[A/C]GATTTTTATT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTTCATTTTACTCCTTCAATCCCATTCGTTTGTCCCCATTTTTTGTTTC</left_flank>
        <right_flank>GATTTTTATTCGTAATATTCTCCATTTCTCTTTTTACTCCCATTTTCTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATCCGAGTGCCAATGATTATTATCAACTGTTGCAAGGCTGGCTGGCAATTGAACGAAATGTTGGGTCCATGATAACGTTTGAATTGAATGCTGATCATATTGGTGAATCAATTTTAGAGTTGGTGAGAAATCAAAACGAAATAACAGAGAGTACTGATCGGTAATATGATATTTTTGATTACTTCATTTTCTAGCCAAATTTTCATTTCAGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGTCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAGAATTCTCGAAAAGATAATTGATACATTTTGAACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTATTTAGCATCAACTTTCTAGTCAAACTGTTCTCTACATTTTTTATTCCCAATTCTTCATTTTACTCCTTCAATCCCATTCGTTTGTCCCCATTTTTTGTTTCCGATTTTTATTCGTAATATTCTCCATTTCTCTTTTTACTCCCATTTTCTTGTTCCCATTTTTCAATATCATTTCTTTGGCCGAAAAACAAATGACGATAATAAATGCATTTTTAATAATGATTCTGGAGGTTTAATACTGAAATGTTAGCACGAAATTAGAGTCATGCAAACTGGTGAATAAAAACTATTCTGATCTCAAAACAGTCTTTAGGTTTGAGATCTGAAAAAGTTCTAGGAACACAGAGAAAAAAGTCTGTTCTCAATCTGGGCCTTCTGGGAAGGTTGGTCTCCTACATACAGGTCTCCTACGACGTGAGTCATCATCGTCATCGGGGTCCCATCTACAGTAATGTCCTCATAGAGGCAGATGTCTTTTTTTTTCATTTATCTGTTCTTCTTCCTCTCCCACATTGCCAGAAGGGACAGTAGGCCACGTAGACAGGGACTCTAATCGTGGCCAGGGAAGACGTTCTCGGCAGTGTACATTCGCAACGCCCATC</canonical>
            <polymorphic>CAATCCGAGTGCCAATGATTATTATCAACTGTTGCAAGGCTGGCTGGCAATTGAACGAAATGTTGGGTCCATGATAACGTTTGAATTGAATGCTGATCATATTGGTGAATCAATTTTAGAGTTGGTGAGAAATCAAAACGAAATAACAGAGAGTACTGATCGGTAATATGATATTTTTGATTACTTCATTTTCTAGCCAAATTTTCATTTCAGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGTCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAGAATTCTCGAAAAGATAATTGATACATTTTGAACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTATTTAGCATCAACTTTCTAGTCAAACTGTTCTCTACATTTTTTATTCCCAATTCTTCATTTTACTCCTTCAATCCCATTCGTTTGTCCCCATTTTTTGTTTCMGATTTTTATTCGTAATATTCTCCATTTCTCTTTTTACTCCCATTTTCTTGTTCCCATTTTTCAATATCATTTCTTTGGCCGAAAAACAAATGACGATAATAAATGCATTTTTAATAATGATTCTGGAGGTTTAATACTGAAATGTTAGCACGAAATTAGAGTCATGCAAACTGGTGAATAAAAACTATTCTGATCTCAAAACAGTCTTTAGGTTTGAGATCTGAAAAAGTTCTAGGAACACAGAGAAAAAAGTCTGTTCTCAATCTGGGCCTTCTGGGAAGGTTGGTCTCCTACATACAGGTCTCCTACGACGTGAGTCATCATCGTCATCGGGGTCCCATCTACAGTAATGTCCTCATAGAGGCAGATGTCTTTTTTTTTCATTTATCTGTTCTTCTTCCTCTCCCACATTGCCAGAAGGGACAGTAGGCCACGTAGACAGGGACTCTAATCGTGGCCAGGGAAGACGTTCTCGGCAGTGTACATTCGCAACGCCCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTCTTCATTTTACTCCTTCA</pcr_primer_p1>
		<pcr_primer_p2>GATCAGAATAGTTTTTATTCACCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAATTCTTCATTTTACTCCTTCAATCCCATTCGTTTGTCCCCATTTTTTGTTTCCGATTTTTATTCGTAATATTCTCCATTTCTCTTTTTACTCCCATTTTCTTGTTCCCATTTTTCAATATCATTTCTTTGGCCGAAAAACAAATGACGATAATAAATGCATTTTTAATAATGATTCTGGAGGTTTAATACTGAAATGTTAGCACGAAATTAGAGTCATGCAAACTGGTGAATAAAAACTATTCTGATC</canonical_amplicon>
		<polymorphic_amplicon>CAATTCTTCATTTTACTCCTTCAATCCCATTCGTTTGTCCCCATTTTTTGTTTCMGATTTTTATTCGTAATATTCTCCATTTCTCTTTTTACTCCCATTTTCTTGTTCCCATTTTTCAATATCATTTCTTTGGCCGAAAAACAAATGACGATAATAAATGCATTTTTAATAATGATTCTGGAGGTTTAATACTGAAATGTTAGCACGAAATTAGAGTCATGCAAACTGGTGAATAAAAACTATTCTGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27466</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>224002</contig_pos>
        <strand>+</strand>
        <context>GATTCTGGAG[A/G]WTTAATACTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGAAAAACAAATGACGATAATAAATGCATTTTTAATAATGATTCTGGAG</left_flank>
        <right_flank>TTTAATACTGAAATGTTAGCACGAAATTAGAGTCATGCAAACTGGTGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCAAAACGAAATAACAGAGAGTACTGATCGGTAATATGATATTTTTGATTACTTCATTTTCTAGCCAAATTTTCATTTCAGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGTCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAGAATTCTCGAAAAGATAATTGATACATTTTGAACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTATTTAGCATCAACTTTCTAGTCAAACTGTTCTCTACATTTTTTATTCCCAATTCTTCATTTTACTCCTTCAATCCCATTCGTTTGTCCCCATTTTTTGTTTCCGATTTTTATTCGTAATATTCTCCATTTCTCTTTTTACTCCCATTTTCTTGTTCCCATTTTTCAATATCATTTCTTTGGCCGAAAAACAAATGACGATAATAAATGCATTTTTAATAATGATTCTGGAGGTTTAATACTGAAATGTTAGCACGAAATTAGAGTCATGCAAACTGGTGAATAAAAACTATTCTGATCTCAAAACAGTCTTTAGGTTTGAGATCTGAAAAAGTTCTAGGAACACAGAGAAAAAAGTCTGTTCTCAATCTGGGCCTTCTGGGAAGGTTGGTCTCCTACATACAGGTCTCCTACGACGTGAGTCATCATCGTCATCGGGGTCCCATCTACAGTAATGTCCTCATAGAGGCAGATGTCTTTTTTTTTCATTTATCTGTTCTTCTTCCTCTCCCACATTGCCAGAAGGGACAGTAGGCCACGTAGACAGGGACTCTAATCGTGGCCAGGGAAGACGTTCTCGGCAGTGTACATTCGCAACGCCCATCCAAACCGTTAGTCACAATCGATCGGTCACTCAGTCATTTTTCCAATAGTCATTCTTCCGAAATCCCTCCGAAATGCGCTTTGTAACCTTTTTTTCTGAATTCATCTCATGCTCCATTATGTTTTAATTT</canonical>
            <polymorphic>AAATCAAAACGAAATAACAGAGAGTACTGATCGGTAATATGATATTTTTGATTACTTCATTTTCTAGCCAAATTTTCATTTCAGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGTCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAGAATTCTCGAAAAGATAATTGATACATTTTGAACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTATTTAGCATCAACTTTCTAGTCAAACTGTTCTCTACATTTTTTATTCCCAATTCTTCATTTTACTCCTTCAATCCCATTCGTTTGTCCCCATTTTTTGTTTCCGATTTTTATTCGTAATATTCTCCATTTCTCTTTTTACTCCCATTTTCTTGTTCCCATTTTTCAATATCATTTCTTTGGCCGAAAAACAAATGACGATAATAAATGCATTTTTAATAATGATTCTGGAGRTTTAATACTGAAATGTTAGCACGAAATTAGAGTCATGCAAACTGGTGAATAAAAACTATTCTGATCTCAAAACAGTCTTTAGGTTTGAGATCTGAAAAAGTTCTAGGAACACAGAGAAAAAAGTCTGTTCTCAATCTGGGCCTTCTGGGAAGGTTGGTCTCCTACATACAGGTCTCCTACGACGTGAGTCATCATCGTCATCGGGGTCCCATCTACAGTAATGTCCTCATAGAGGCAGATGTCTTTTTTTTTCATTTATCTGTTCTTCTTCCTCTCCCACATTGCCAGAAGGGACAGTAGGCCACGTAGACAGGGACTCTAATCGTGGCCAGGGAAGACGTTCTCGGCAGTGTACATTCGCAACGCCCATCCAAACCGTTAGTCACAATCGATCGGTCACTCAGTCATTTTTCCAATAGTCATTCTTCCGAAATCCCTCCGAAATGCGCTTTGTAACCTTTTTTTCTGAATTCATCTCATGCTCCATTATGTTTTAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTCCATTTCTCTTTTTACTCC</pcr_primer_p1>
		<pcr_primer_p2>CCAGATTGAGAACAGACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCTCCATTTCTCTTTTTACTCCCATTTTCTTGTTCCCATTTTTCAATATCATTTCTTTGGCCGAAAAACAAATGACGATAATAAATGCATTTTTAATAATGATTCTGGAGGTTTAATACTGAAATGTTAGCACGAAATTAGAGTCATGCAAACTGGTGAATAAAAACTATTCTGATCTCAAAACAGTCTTTAGGTTTGAGATCTGAAAAAGTTCTAGGAACACAGAGAAAAAAGTCTGTTCTCAATCTGG</canonical_amplicon>
		<polymorphic_amplicon>TTCTCCATTTCTCTTTTTACTCCCATTTTCTTGTTCCCATTTTTCAATATCATTTCTTTGGCCGAAAAACAAATGACGATAATAAATGCATTTTTAATAATGATTCTGGAGRTTTAATACTGAAATGTTAGCACGAAATTAGAGTCATGCAAACTGGTGAATAAAAACTATTCTGATCTCAAAACAGTCTTTAGGTTTGAGATCTGAAAAAGTTCTAGGAACACAGAGAAAAAAGTCTGTTCTCAATCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27467</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>224003</contig_pos>
        <strand>+</strand>
        <context>ATTCTGGAGR[A/T]TTAATACTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGAAAAACAAATGACGATAATAAATGCATTTTTAATAATGATTCTGGAGG</left_flank>
        <right_flank>TTAATACTGAAATGTTAGCACGAAATTAGAGTCATGCAAACTGGTGAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCAAAACGAAATAACAGAGAGTACTGATCGGTAATATGATATTTTTGATTACTTCATTTTCTAGCCAAATTTTCATTTCAGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGTCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAGAATTCTCGAAAAGATAATTGATACATTTTGAACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTATTTAGCATCAACTTTCTAGTCAAACTGTTCTCTACATTTTTTATTCCCAATTCTTCATTTTACTCCTTCAATCCCATTCGTTTGTCCCCATTTTTTGTTTCCGATTTTTATTCGTAATATTCTCCATTTCTCTTTTTACTCCCATTTTCTTGTTCCCATTTTTCAATATCATTTCTTTGGCCGAAAAACAAATGACGATAATAAATGCATTTTTAATAATGATTCTGGAGGTTTAATACTGAAATGTTAGCACGAAATTAGAGTCATGCAAACTGGTGAATAAAAACTATTCTGATCTCAAAACAGTCTTTAGGTTTGAGATCTGAAAAAGTTCTAGGAACACAGAGAAAAAAGTCTGTTCTCAATCTGGGCCTTCTGGGAAGGTTGGTCTCCTACATACAGGTCTCCTACGACGTGAGTCATCATCGTCATCGGGGTCCCATCTACAGTAATGTCCTCATAGAGGCAGATGTCTTTTTTTTTCATTTATCTGTTCTTCTTCCTCTCCCACATTGCCAGAAGGGACAGTAGGCCACGTAGACAGGGACTCTAATCGTGGCCAGGGAAGACGTTCTCGGCAGTGTACATTCGCAACGCCCATCCAAACCGTTAGTCACAATCGATCGGTCACTCAGTCATTTTTCCAATAGTCATTCTTCCGAAATCCCTCCGAAATGCGCTTTGTAACCTTTTTTTCTGAATTCATCTCATGCTCCATTATGTTTTAATTTT</canonical>
            <polymorphic>AATCAAAACGAAATAACAGAGAGTACTGATCGGTAATATGATATTTTTGATTACTTCATTTTCTAGCCAAATTTTCATTTCAGATGTGTTACAGTTCCACTGAGAAATGCCACAAAACTCGAAGTCTTCTACGCGCCTCTTCACGAAGATGAAAACGTGTCCAGATTCTTTTTTGAAGTCAGGATTGAGAAATCGTAGAATTCTCGAAAAGATAATTGATACATTTTGAACTCATTTTTTTCATTTCTATTATTGTATGCTTAATTTATTTAGCATCAACTTTCTAGTCAAACTGTTCTCTACATTTTTTATTCCCAATTCTTCATTTTACTCCTTCAATCCCATTCGTTTGTCCCCATTTTTTGTTTCCGATTTTTATTCGTAATATTCTCCATTTCTCTTTTTACTCCCATTTTCTTGTTCCCATTTTTCAATATCATTTCTTTGGCCGAAAAACAAATGACGATAATAAATGCATTTTTAATAATGATTCTGGAGGWTTAATACTGAAATGTTAGCACGAAATTAGAGTCATGCAAACTGGTGAATAAAAACTATTCTGATCTCAAAACAGTCTTTAGGTTTGAGATCTGAAAAAGTTCTAGGAACACAGAGAAAAAAGTCTGTTCTCAATCTGGGCCTTCTGGGAAGGTTGGTCTCCTACATACAGGTCTCCTACGACGTGAGTCATCATCGTCATCGGGGTCCCATCTACAGTAATGTCCTCATAGAGGCAGATGTCTTTTTTTTTCATTTATCTGTTCTTCTTCCTCTCCCACATTGCCAGAAGGGACAGTAGGCCACGTAGACAGGGACTCTAATCGTGGCCAGGGAAGACGTTCTCGGCAGTGTACATTCGCAACGCCCATCCAAACCGTTAGTCACAATCGATCGGTCACTCAGTCATTTTTCCAATAGTCATTCTTCCGAAATCCCTCCGAAATGCGCTTTGTAACCTTTTTTTCTGAATTCATCTCATGCTCCATTATGTTTTAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTCCATTTCTCTTTTTACTCC</pcr_primer_p1>
		<pcr_primer_p2>CCAGATTGAGAACAGACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCTCCATTTCTCTTTTTACTCCCATTTTCTTGTTCCCATTTTTCAATATCATTTCTTTGGCCGAAAAACAAATGACGATAATAAATGCATTTTTAATAATGATTCTGGAGGTTTAATACTGAAATGTTAGCACGAAATTAGAGTCATGCAAACTGGTGAATAAAAACTATTCTGATCTCAAAACAGTCTTTAGGTTTGAGATCTGAAAAAGTTCTAGGAACACAGAGAAAAAAGTCTGTTCTCAATCTGG</canonical_amplicon>
		<polymorphic_amplicon>TTCTCCATTTCTCTTTTTACTCCCATTTTCTTGTTCCCATTTTTCAATATCATTTCTTTGGCCGAAAAACAAATGACGATAATAAATGCATTTTTAATAATGATTCTGGAGGWTTAATACTGAAATGTTAGCACGAAATTAGAGTCATGCAAACTGGTGAATAAAAACTATTCTGATCTCAAAACAGTCTTTAGGTTTGAGATCTGAAAAAGTTCTAGGAACACAGAGAAAAAAGTCTGTTCTCAATCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27468</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>225287</contig_pos>
        <strand>+</strand>
        <context>CTGACCATTA[C/T]CCAAGGAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGAAACAACTTATCTCCTCCGTATACATGTTACATCCAACTGACCATTA</left_flank>
        <right_flank>CCAAGGAAATGTCACAAATATTCAGAGATATGAGTATAATCATAAACTCT</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGAAGAAAGCACAACCAAAGTCAACAGCCAATCCTACAAACTTGGAGTCTACCGTCATTATCATACAGAAGACATACCTATGGGAATTAAAAATCGTAACAAATGGGGAGGTGTAAGCTGTGATTTGGATCAGTATGGATTCGAAATTCCTAACTCGTTCGATCCTATTCTAAACGGAGATGTTTCATTTCGAAGGGAAATTGCAACTGATCGTCGAAGAGATACAGAAGAAAGAGAGCAACGTTTGCAGTTCTCACTGAGAAGATATGAAGAAGCTCTAGCAAAAATCAATCAATTGGAATCGGAGGGAAAAACGGTCGACGACTTTTTAGCTGGACCAATGAATGAGGATGATCAACGTATTAGACGCACTTTGGAAATCCCCAAGGAACAGTTACAATCAGGAGTTAATCGATACCGCAGCGCACTACTTCCGTTCCATTACCGACGAAACAACTTATCTCCTCCGTATACATGTTACATCCAACTGACCATTATCCAAGGAAATGTCACAAATATTCAGAGATATGAGTATAATCATAAACTCTACGAAGCCTCTAAGAAACTCAACGAAATTCTCTTTGTGAATCGTTCTGTAATTATTGCCGATCACTTCCAGAATACATGTGCCGATGTTTTGCGTACACCGATTGGATTCAAAATATTTGCTAATAATGTATACGGATATAATTTCCAAATAATCCCTATGTCTTCAATTGTCGATTCTTCGAGAGCTTTGCCCGAATTGAGCATTAGTGTCACATCCGGTGTAGTCTCGAATTTCTCACACAGTCTTGTGAAAAATGCTGAAACGCTCTCAATTTATATAAATGAGGGAAGAATTAATCAGCTCGCGATCGCTTTGGAAACTATGGAAAATCAACACATTCACATCCAATTTGGCCAATTCGATAACCCGAGCCCAAATGAATATTTTCAATTGTTGCACGGCTGGCTGGCAACAGAACGCAGTGTCGGATTGATGATTACGTCTGGAT</canonical>
            <polymorphic>TTGGAAGAAAGCACAACCAAAGTCAACAGCCAATCCTACAAACTTGGAGTCTACCGTCATTATCATACAGAAGACATACCTATGGGAATTAAAAATCGTAACAAATGGGGAGGTGTAAGCTGTGATTTGGATCAGTATGGATTCGAAATTCCTAACTCGTTCGATCCTATTCTAAACGGAGATGTTTCATTTCGAAGGGAAATTGCAACTGATCGTCGAAGAGATACAGAAGAAAGAGAGCAACGTTTGCAGTTCTCACTGAGAAGATATGAAGAAGCTCTAGCAAAAATCAATCAATTGGAATCGGAGGGAAAAACGGTCGACGACTTTTTAGCTGGACCAATGAATGAGGATGATCAACGTATTAGACGCACTTTGGAAATCCCCAAGGAACAGTTACAATCAGGAGTTAATCGATACCGCAGCGCACTACTTCCGTTCCATTACCGACGAAACAACTTATCTCCTCCGTATACATGTTACATCCAACTGACCATTAYCCAAGGAAATGTCACAAATATTCAGAGATATGAGTATAATCATAAACTCTACGAAGCCTCTAAGAAACTCAACGAAATTCTCTTTGTGAATCGTTCTGTAATTATTGCCGATCACTTCCAGAATACATGTGCCGATGTTTTGCGTACACCGATTGGATTCAAAATATTTGCTAATAATGTATACGGATATAATTTCCAAATAATCCCTATGTCTTCAATTGTCGATTCTTCGAGAGCTTTGCCCGAATTGAGCATTAGTGTCACATCCGGTGTAGTCTCGAATTTCTCACACAGTCTTGTGAAAAATGCTGAAACGCTCTCAATTTATATAAATGAGGGAAGAATTAATCAGCTCGCGATCGCTTTGGAAACTATGGAAAATCAACACATTCACATCCAATTTGGCCAATTCGATAACCCGAGCCCAAATGAATATTTTCAATTGTTGCACGGCTGGCTGGCAACAGAACGCAGTGTCGGATTGATGATTACGTCTGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAGGATGATCAACGTATTAGA</pcr_primer_p1>
		<pcr_primer_p2>GAACGATTCACAAAGAGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGAGGATGATCAACGTATTAGACGCACTTTGGAAATCCCCAAGGAACAGTTACAATCAGGAGTTAATCGATACCGCAGCGCACTACTTCCGTTCCATTACCGACGAAACAACTTATCTCCTCCGTATACATGTTACATCCAACTGACCATTATCCAAGGAAATGTCACAAATATTCAGAGATATGAGTATAATCATAAACTCTACGAAGCCTCTAAGAAACTCAACGAAATTCTCTTTGTGAATCGTTC</canonical_amplicon>
		<polymorphic_amplicon>ATGAGGATGATCAACGTATTAGACGCACTTTGGAAATCCCCAAGGAACAGTTACAATCAGGAGTTAATCGATACCGCAGCGCACTACTTCCGTTCCATTACCGACGAAACAACTTATCTCCTCCGTATACATGTTACATCCAACTGACCATTAYCCAAGGAAATGTCACAAATATTCAGAGATATGAGTATAATCATAAACTCTACGAAGCCTCTAAGAAACTCAACGAAATTCTCTTTGTGAATCGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27469</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>234607</contig_pos>
        <strand>+</strand>
        <context>ATACCATAAG[A/G]CACGTCCATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTTTAAAGCAAAACACCATACGAGTGCCGATATTTGGGATACCATAAG</left_flank>
        <right_flank>CACGTCCATGATACCATAAGATAGTGACAGTAGATATTGCACAGTCTTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCAACTGCAAGTAACATGAGTGCAAATGGAGGAGCAAGGCATAGCGAGGATGCCGCAAACTGCGCCAGTAAACTTCTTACAGCCATTTCGTATCTTTTGTAACTTTTTCCAGAAACCTTCAATTTCAGTCCCCGTAACATTTTTCGCATATCAATAGTGGTAAAAGTGAATGTGAAGCCAGAAAAGAACATTCCAAAACTAGAGATAAAGAGCACAATCACAAACCATCCATCGATTTCGTAAATTGAAAAGTTTTGCAAATTTTTGAACTTTTGAAAATATTCTGGATAATTCTTTTCAACGTATTCCATTTGGATGCTTCTACTAATTCCAGTATTGTAGCAAGCCCAAAAAGTTAACGCTGGAGATATAATTGAAAAAATTCCGCCAGAAAAATAAACATAATTTGAGATTATTCTTCCACTTGTAACCAGGCCAATGGTCCGATGTTTTAAAGCAAAACACCATACGAGTGCCGATATTTGGGATACCATAAGACACGTCCATGATACCATAAGATAGTGACAGTAGATATTGCACAGTCTTACTAGGAGGCCATTACAGTAAGCTGCGATAATTGGAAATAATGGGATTGGTTGCATTAGAAAAGTCCAGAATATGTTTGTAATCGTGCAGAGAATCTGAAATTCGTAAATCAGAAATTCAAAAAACCTAAAATTCAAAACAAATTCCAAAAACCTCAAATTGTAAAAAATTCAAATATCAAAATTTCGAAAACTCAAAAAACCTAAAACCTGAAAAATTCTAAAACTATAAATTTCAAGCAATTCAAATAAATTCAAAAATTCGAAAATTCAGAAAATGGGAAATTCCGAATTTCCAAATTTCCGAAATTTCAGAATTTCAGAATTTCGTAATCTTAGAAACTCAGAATCTCAGAATTTTAGAACTTCAGAATTTCAAAAGTCCAGAATTTCGGAATTTCAGAATTTCAGAATTTCGTAATCTTAGAAACTCAGAATCTCAGAATTTTAGAA</canonical>
            <polymorphic>TTCCAACTGCAAGTAACATGAGTGCAAATGGAGGAGCAAGGCATAGCGAGGATGCCGCAAACTGCGCCAGTAAACTTCTTACAGCCATTTCGTATCTTTTGTAACTTTTTCCAGAAACCTTCAATTTCAGTCCCCGTAACATTTTTCGCATATCAATAGTGGTAAAAGTGAATGTGAAGCCAGAAAAGAACATTCCAAAACTAGAGATAAAGAGCACAATCACAAACCATCCATCGATTTCGTAAATTGAAAAGTTTTGCAAATTTTTGAACTTTTGAAAATATTCTGGATAATTCTTTTCAACGTATTCCATTTGGATGCTTCTACTAATTCCAGTATTGTAGCAAGCCCAAAAAGTTAACGCTGGAGATATAATTGAAAAAATTCCGCCAGAAAAATAAACATAATTTGAGATTATTCTTCCACTTGTAACCAGGCCAATGGTCCGATGTTTTAAAGCAAAACACCATACGAGTGCCGATATTTGGGATACCATAAGRCACGTCCATGATACCATAAGATAGTGACAGTAGATATTGCACAGTCTTACTAGGAGGCCATTACAGTAAGCTGCGATAATTGGAAATAATGGGATTGGTTGCATTAGAAAAGTCCAGAATATGTTTGTAATCGTGCAGAGAATCTGAAATTCGTAAATCAGAAATTCAAAAAACCTAAAATTCAAAACAAATTCCAAAAACCTCAAATTGTAAAAAATTCAAATATCAAAATTTCGAAAACTCAAAAAACCTAAAACCTGAAAAATTCTAAAACTATAAATTTCAAGCAATTCAAATAAATTCAAAAATTCGAAAATTCAGAAAATGGGAAATTCCGAATTTCCAAATTTCCGAAATTTCAGAATTTCAGAATTTCGTAATCTTAGAAACTCAGAATCTCAGAATTTTAGAACTTCAGAATTTCAAAAGTCCAGAATTTCGGAATTTCAGAATTTCAGAATTTCGTAATCTTAGAAACTCAGAATCTCAGAATTTTAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGATTATTCTTCCACTTGTAACC</pcr_primer_p1>
		<pcr_primer_p2>TGATTTACGAATTTCAGATTCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGATTATTCTTCCACTTGTAACCAGGCCAATGGTCCGATGTTTTAAAGCAAAACACCATACGAGTGCCGATATTTGGGATACCATAAGACACGTCCATGATACCATAAGATAGTGACAGTAGATATTGCACAGTCTTACTAGGAGGCCATTACAGTAAGCTGCGATAATTGGAAATAATGGGATTGGTTGCATTAGAAAAGTCCAGAATATGTTTGTAATCGTGCAGAGAATCTGAAATTCGTAAATCA</canonical_amplicon>
		<polymorphic_amplicon>GAGATTATTCTTCCACTTGTAACCAGGCCAATGGTCCGATGTTTTAAAGCAAAACACCATACGAGTGCCGATATTTGGGATACCATAAGRCACGTCCATGATACCATAAGATAGTGACAGTAGATATTGCACAGTCTTACTAGGAGGCCATTACAGTAAGCTGCGATAATTGGAAATAATGGGATTGGTTGCATTAGAAAAGTCCAGAATATGTTTGTAATCGTGCAGAGAATCTGAAATTCGTAAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27470</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>234724</contig_pos>
        <strand>+</strand>
        <context>GAAAAGTCCA[A/C]AATATGTYMG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAAGCTGCGATAATTGGAAATAATGGGATTGGTTGCATTAGAAAAGTCCA</left_flank>
        <right_flank>AATATGTTTGTAATCGTGCAGAGAATCTGAAATTCGTAAATCAGAAATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTCAATTTCAGTCCCCGTAACATTTTTCGCATATCAATAGTGGTAAAAGTGAATGTGAAGCCAGAAAAGAACATTCCAAAACTAGAGATAAAGAGCACAATCACAAACCATCCATCGATTTCGTAAATTGAAAAGTTTTGCAAATTTTTGAACTTTTGAAAATATTCTGGATAATTCTTTTCAACGTATTCCATTTGGATGCTTCTACTAATTCCAGTATTGTAGCAAGCCCAAAAAGTTAACGCTGGAGATATAATTGAAAAAATTCCGCCAGAAAAATAAACATAATTTGAGATTATTCTTCCACTTGTAACCAGGCCAATGGTCCGATGTTTTAAAGCAAAACACCATACGAGTGCCGATATTTGGGATACCATAAGACACGTCCATGATACCATAAGATAGTGACAGTAGATATTGCACAGTCTTACTAGGAGGCCATTACAGTAAGCTGCGATAATTGGAAATAATGGGATTGGTTGCATTAGAAAAGTCCAGAATATGTTTGTAATCGTGCAGAGAATCTGAAATTCGTAAATCAGAAATTCAAAAAACCTAAAATTCAAAACAAATTCCAAAAACCTCAAATTGTAAAAAATTCAAATATCAAAATTTCGAAAACTCAAAAAACCTAAAACCTGAAAAATTCTAAAACTATAAATTTCAAGCAATTCAAATAAATTCAAAAATTCGAAAATTCAGAAAATGGGAAATTCCGAATTTCCAAATTTCCGAAATTTCAGAATTTCAGAATTTCGTAATCTTAGAAACTCAGAATCTCAGAATTTTAGAACTTCAGAATTTCAAAAGTCCAGAATTTCGGAATTTCAGAATTTCAGAATTTCGTAATCTTAGAAACTCAGAATCTCAGAATTTTAGAACTTCAGAATTTCAAAAGTCCAGAATTTCGGAATTTCAGAATTTCAGAATTTCGTAATCTTAGAAACCCAGAATCTCAGAATTTCAGAACTTCAGAATTTCAAAAGTCCGGAATTTCG</canonical>
            <polymorphic>CCTTCAATTTCAGTCCCCGTAACATTTTTCGCATATCAATAGTGGTAAAAGTGAATGTGAAGCCAGAAAAGAACATTCCAAAACTAGAGATAAAGAGCACAATCACAAACCATCCATCGATTTCGTAAATTGAAAAGTTTTGCAAATTTTTGAACTTTTGAAAATATTCTGGATAATTCTTTTCAACGTATTCCATTTGGATGCTTCTACTAATTCCAGTATTGTAGCAAGCCCAAAAAGTTAACGCTGGAGATATAATTGAAAAAATTCCGCCAGAAAAATAAACATAATTTGAGATTATTCTTCCACTTGTAACCAGGCCAATGGTCCGATGTTTTAAAGCAAAACACCATACGAGTGCCGATATTTGGGATACCATAAGACACGTCCATGATACCATAAGATAGTGACAGTAGATATTGCACAGTCTTACTAGGAGGCCATTACAGTAAGCTGCGATAATTGGAAATAATGGGATTGGTTGCATTAGAAAAGTCCAMAATATGTTTGTAATCGTGCAGAGAATCTGAAATTCGTAAATCAGAAATTCAAAAAACCTAAAATTCAAAACAAATTCCAAAAACCTCAAATTGTAAAAAATTCAAATATCAAAATTTCGAAAACTCAAAAAACCTAAAACCTGAAAAATTCTAAAACTATAAATTTCAAGCAATTCAAATAAATTCAAAAATTCGAAAATTCAGAAAATGGGAAATTCCGAATTTCCAAATTTCCGAAATTTCAGAATTTCAGAATTTCGTAATCTTAGAAACTCAGAATCTCAGAATTTTAGAACTTCAGAATTTCAAAAGTCCAGAATTTCGGAATTTCAGAATTTCAGAATTTCGTAATCTTAGAAACTCAGAATCTCAGAATTTTAGAACTTCAGAATTTCAAAAGTCCAGAATTTCGGAATTTCAGAATTTCAGAATTTCGTAATCTTAGAAACCCAGAATCTCAGAATTTCAGAACTTCAGAATTTCAAAAGTCCGGAATTTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>328 317 169 88 88 10</canonical_bands>
                <polymorphic_bands>645 169 88 88 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTTTTAAAGCAAAACACCATA</pcr_primer_p1>
		<pcr_primer_p2>GGAATTTGTTTTGAATTTTAGGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATGTTTTAAAGCAAAACACCATACGAGTGCCGATATTTGGGATACCATAAGACACGTCCATGATACCATAAGATAGTGACAGTAGATATTGCACAGTCTTACTAGGAGGCCATTACAGTAAGCTGCGATAATTGGAAATAATGGGATTGGTTGCATTAGAAAAGTCCAGAATATGTTTGTAATCGTGCAGAGAATCTGAAATTCGTAAATCAGAAATTCAAAAAACCTAAAATTCAAAACAAATTCC</canonical_amplicon>
		<polymorphic_amplicon>ATGTTTTAAAGCAAAACACCATACGAGTGCCGATATTTGGGATACCATAAGACACGTCCATGATACCATAAGATAGTGACAGTAGATATTGCACAGTCTTACTAGGAGGCCATTACAGTAAGCTGCGATAATTGGAAATAATGGGATTGGTTGCATTAGAAAAGTCCAMAATATGTTTGTAATCGTGCAGAGAATCTGAAATTCGTAAATCAGAAATTCAAAAAACCTAAAATTCAAAACAAATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27471</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>234733</contig_pos>
        <strand>+</strand>
        <context>AMAATATGTY[A/C]GTAATSGTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATAATTGGAAATAATGGGATTGGTTGCATTAGAAAAGTCCAGAATATGTT</left_flank>
        <right_flank>GTAATCGTGCAGAGAATCTGAAATTCGTAAATCAGAAATTCAAAAAACCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGTCCCCGTAACATTTTTCGCATATCAATAGTGGTAAAAGTGAATGTGAAGCCAGAAAAGAACATTCCAAAACTAGAGATAAAGAGCACAATCACAAACCATCCATCGATTTCGTAAATTGAAAAGTTTTGCAAATTTTTGAACTTTTGAAAATATTCTGGATAATTCTTTTCAACGTATTCCATTTGGATGCTTCTACTAATTCCAGTATTGTAGCAAGCCCAAAAAGTTAACGCTGGAGATATAATTGAAAAAATTCCGCCAGAAAAATAAACATAATTTGAGATTATTCTTCCACTTGTAACCAGGCCAATGGTCCGATGTTTTAAAGCAAAACACCATACGAGTGCCGATATTTGGGATACCATAAGACACGTCCATGATACCATAAGATAGTGACAGTAGATATTGCACAGTCTTACTAGGAGGCCATTACAGTAAGCTGCGATAATTGGAAATAATGGGATTGGTTGCATTAGAAAAGTCCAGAATATGTTTGTAATCGTGCAGAGAATCTGAAATTCGTAAATCAGAAATTCAAAAAACCTAAAATTCAAAACAAATTCCAAAAACCTCAAATTGTAAAAAATTCAAATATCAAAATTTCGAAAACTCAAAAAACCTAAAACCTGAAAAATTCTAAAACTATAAATTTCAAGCAATTCAAATAAATTCAAAAATTCGAAAATTCAGAAAATGGGAAATTCCGAATTTCCAAATTTCCGAAATTTCAGAATTTCAGAATTTCGTAATCTTAGAAACTCAGAATCTCAGAATTTTAGAACTTCAGAATTTCAAAAGTCCAGAATTTCGGAATTTCAGAATTTCAGAATTTCGTAATCTTAGAAACTCAGAATCTCAGAATTTTAGAACTTCAGAATTTCAAAAGTCCAGAATTTCGGAATTTCAGAATTTCAGAATTTCGTAATCTTAGAAACCCAGAATCTCAGAATTTCAGAACTTCAGAATTTCAAAAGTCCGGAATTTCGGAATTTCAG</canonical>
            <polymorphic>TCAGTCCCCGTAACATTTTTCGCATATCAATAGTGGTAAAAGTGAATGTGAAGCCAGAAAAGAACATTCCAAAACTAGAGATAAAGAGCACAATCACAAACCATCCATCGATTTCGTAAATTGAAAAGTTTTGCAAATTTTTGAACTTTTGAAAATATTCTGGATAATTCTTTTCAACGTATTCCATTTGGATGCTTCTACTAATTCCAGTATTGTAGCAAGCCCAAAAAGTTAACGCTGGAGATATAATTGAAAAAATTCCGCCAGAAAAATAAACATAATTTGAGATTATTCTTCCACTTGTAACCAGGCCAATGGTCCGATGTTTTAAAGCAAAACACCATACGAGTGCCGATATTTGGGATACCATAAGACACGTCCATGATACCATAAGATAGTGACAGTAGATATTGCACAGTCTTACTAGGAGGCCATTACAGTAAGCTGCGATAATTGGAAATAATGGGATTGGTTGCATTAGAAAAGTCCAGAATATGTTMGTAATCGTGCAGAGAATCTGAAATTCGTAAATCAGAAATTCAAAAAACCTAAAATTCAAAACAAATTCCAAAAACCTCAAATTGTAAAAAATTCAAATATCAAAATTTCGAAAACTCAAAAAACCTAAAACCTGAAAAATTCTAAAACTATAAATTTCAAGCAATTCAAATAAATTCAAAAATTCGAAAATTCAGAAAATGGGAAATTCCGAATTTCCAAATTTCCGAAATTTCAGAATTTCAGAATTTCGTAATCTTAGAAACTCAGAATCTCAGAATTTTAGAACTTCAGAATTTCAAAAGTCCAGAATTTCGGAATTTCAGAATTTCAGAATTTCGTAATCTTAGAAACTCAGAATCTCAGAATTTTAGAACTTCAGAATTTCAAAAGTCCAGAATTTCGGAATTTCAGAATTTCAGAATTTCGTAATCTTAGAAACCCAGAATCTCAGAATTTCAGAACTTCAGAATTTCAAAAGTCCGGAATTTCGGAATTTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTTTTAAAGCAAAACACCATA</pcr_primer_p1>
		<pcr_primer_p2>GGAATTTGTTTTGAATTTTAGGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATGTTTTAAAGCAAAACACCATACGAGTGCCGATATTTGGGATACCATAAGACACGTCCATGATACCATAAGATAGTGACAGTAGATATTGCACAGTCTTACTAGGAGGCCATTACAGTAAGCTGCGATAATTGGAAATAATGGGATTGGTTGCATTAGAAAAGTCCAGAATATGTTTGTAATCGTGCAGAGAATCTGAAATTCGTAAATCAGAAATTCAAAAAACCTAAAATTCAAAACAAATTCC</canonical_amplicon>
		<polymorphic_amplicon>ATGTTTTAAAGCAAAACACCATACGAGTGCCGATATTTGGGATACCATAAGACACGTCCATGATACCATAAGATAGTGACAGTAGATATTGCACAGTCTTACTAGGAGGCCATTACAGTAAGCTGCGATAATTGGAAATAATGGGATTGGTTGCATTAGAAAAGTCCAGAATATGTTMGTAATCGTGCAGAGAATCTGAAATTCGTAAATCAGAAATTCAAAAAACCTAAAATTCAAAACAAATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27472</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>234739</contig_pos>
        <strand>+</strand>
        <context>TGTYMGTAAT[C/G]GTGCAGAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGAAATAATGGGATTGGTTGCATTAGAAAAGTCCAGAATATGTTTGTAAT</left_flank>
        <right_flank>GTGCAGAGAATCTGAAATTCGTAAATCAGAAATTCAAAAAACCTAAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCGTAACATTTTTCGCATATCAATAGTGGTAAAAGTGAATGTGAAGCCAGAAAAGAACATTCCAAAACTAGAGATAAAGAGCACAATCACAAACCATCCATCGATTTCGTAAATTGAAAAGTTTTGCAAATTTTTGAACTTTTGAAAATATTCTGGATAATTCTTTTCAACGTATTCCATTTGGATGCTTCTACTAATTCCAGTATTGTAGCAAGCCCAAAAAGTTAACGCTGGAGATATAATTGAAAAAATTCCGCCAGAAAAATAAACATAATTTGAGATTATTCTTCCACTTGTAACCAGGCCAATGGTCCGATGTTTTAAAGCAAAACACCATACGAGTGCCGATATTTGGGATACCATAAGACACGTCCATGATACCATAAGATAGTGACAGTAGATATTGCACAGTCTTACTAGGAGGCCATTACAGTAAGCTGCGATAATTGGAAATAATGGGATTGGTTGCATTAGAAAAGTCCAGAATATGTTTGTAATCGTGCAGAGAATCTGAAATTCGTAAATCAGAAATTCAAAAAACCTAAAATTCAAAACAAATTCCAAAAACCTCAAATTGTAAAAAATTCAAATATCAAAATTTCGAAAACTCAAAAAACCTAAAACCTGAAAAATTCTAAAACTATAAATTTCAAGCAATTCAAATAAATTCAAAAATTCGAAAATTCAGAAAATGGGAAATTCCGAATTTCCAAATTTCCGAAATTTCAGAATTTCAGAATTTCGTAATCTTAGAAACTCAGAATCTCAGAATTTTAGAACTTCAGAATTTCAAAAGTCCAGAATTTCGGAATTTCAGAATTTCAGAATTTCGTAATCTTAGAAACTCAGAATCTCAGAATTTTAGAACTTCAGAATTTCAAAAGTCCAGAATTTCGGAATTTCAGAATTTCAGAATTTCGTAATCTTAGAAACCCAGAATCTCAGAATTTCAGAACTTCAGAATTTCAAAAGTCCGGAATTTCGGAATTTCAGAATTCC</canonical>
            <polymorphic>CCCGTAACATTTTTCGCATATCAATAGTGGTAAAAGTGAATGTGAAGCCAGAAAAGAACATTCCAAAACTAGAGATAAAGAGCACAATCACAAACCATCCATCGATTTCGTAAATTGAAAAGTTTTGCAAATTTTTGAACTTTTGAAAATATTCTGGATAATTCTTTTCAACGTATTCCATTTGGATGCTTCTACTAATTCCAGTATTGTAGCAAGCCCAAAAAGTTAACGCTGGAGATATAATTGAAAAAATTCCGCCAGAAAAATAAACATAATTTGAGATTATTCTTCCACTTGTAACCAGGCCAATGGTCCGATGTTTTAAAGCAAAACACCATACGAGTGCCGATATTTGGGATACCATAAGACACGTCCATGATACCATAAGATAGTGACAGTAGATATTGCACAGTCTTACTAGGAGGCCATTACAGTAAGCTGCGATAATTGGAAATAATGGGATTGGTTGCATTAGAAAAGTCCAGAATATGTTTGTAATSGTGCAGAGAATCTGAAATTCGTAAATCAGAAATTCAAAAAACCTAAAATTCAAAACAAATTCCAAAAACCTCAAATTGTAAAAAATTCAAATATCAAAATTTCGAAAACTCAAAAAACCTAAAACCTGAAAAATTCTAAAACTATAAATTTCAAGCAATTCAAATAAATTCAAAAATTCGAAAATTCAGAAAATGGGAAATTCCGAATTTCCAAATTTCCGAAATTTCAGAATTTCAGAATTTCGTAATCTTAGAAACTCAGAATCTCAGAATTTTAGAACTTCAGAATTTCAAAAGTCCAGAATTTCGGAATTTCAGAATTTCAGAATTTCGTAATCTTAGAAACTCAGAATCTCAGAATTTTAGAACTTCAGAATTTCAAAAGTCCAGAATTTCGGAATTTCAGAATTTCAGAATTTCGTAATCTTAGAAACCCAGAATCTCAGAATTTCAGAACTTCAGAATTTCAAAAGTCCGGAATTTCGGAATTTCAGAATTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTTTTAAAGCAAAACACCATA</pcr_primer_p1>
		<pcr_primer_p2>GGAATTTGTTTTGAATTTTAGGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATGTTTTAAAGCAAAACACCATACGAGTGCCGATATTTGGGATACCATAAGACACGTCCATGATACCATAAGATAGTGACAGTAGATATTGCACAGTCTTACTAGGAGGCCATTACAGTAAGCTGCGATAATTGGAAATAATGGGATTGGTTGCATTAGAAAAGTCCAGAATATGTTTGTAATCGTGCAGAGAATCTGAAATTCGTAAATCAGAAATTCAAAAAACCTAAAATTCAAAACAAATTCC</canonical_amplicon>
		<polymorphic_amplicon>ATGTTTTAAAGCAAAACACCATACGAGTGCCGATATTTGGGATACCATAAGACACGTCCATGATACCATAAGATAGTGACAGTAGATATTGCACAGTCTTACTAGGAGGCCATTACAGTAAGCTGCGATAATTGGAAATAATGGGATTGGTTGCATTAGAAAAGTCCAGAATATGTTTGTAATSGTGCAGAGAATCTGAAATTCGTAAATCAGAAATTCAAAAAACCTAAAATTCAAAACAAATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27473</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>337631</contig_pos>
        <strand>+</strand>
        <context>TAAAAATGAC[A/G]CTCACGTGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCTCAACTGATATACATCCTCTAAATGTGTCATCAATCTTAAAAATGAC</left_flank>
        <right_flank>CTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAA</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGCACGTATAGGGTGAGCTTCTGTTAGAGCAAATACGGTACATGAAAAATATCAAACAATTTATACATTTTGACCTAGTTTGTGATAAGATTTGGTCTCTCTGTCAGTAAAATAATGGTCAATGCACAGTGAAAAAGAGGCGATATCACAAGAAACTCAAAAATATCAAACTCTTGACTCATGACCCCATAACACCAACTTTTTTTACAGAAAACCCCCACTATATAGGACACAAATTTTCGAAAGTGTAAAGGACTCTTTTTGCCTGTGTCAAATGTTTCTCTTCCGTCTCGTAATCTCTCTCACTAACACATATCACCGCCAATCAAAATATTTCGACTCTTTTTCCCGCGTTTTCCATCAGGCACACTCATAGAAACAACTGTTCGGAAACTGAATCTCTATCTCGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTGATATACATCCTCTAAATGTGTCATCAATCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAACATTTGAAAACTGTGTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTG</canonical>
            <polymorphic>AGTGCACGTATAGGGTGAGCTTCTGTTAGAGCAAATACGGTACATGAAAAATATCAAACAATTTATACATTTTGACCTAGTTTGTGATAAGATTTGGTCTCTCTGTCAGTAAAATAATGGTCAATGCACAGTGAAAAAGAGGCGATATCACAAGAAACTCAAAAATATCAAACTCTTGACTCATGACCCCATAACACCAACTTTTTTTACAGAAAACCCCCACTATATAGGACACAAATTTTCGAAAGTGTAAAGGACTCTTTTTGCCTGTGTCAAATGTTTCTCTTCCGTCTCGTAATCTCTCTCACTAACACATATCACCGCCAATCAAAATATTTCGACTCTTTTTCCCGCGTTTTCCATCAGGCACACTCATAGAAACAACTGTTCGGAAACTGAATCTCTATCTCGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTGATATACATCCTCTAAATGTGTCATCAATCTTAAAAATGACRCTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAACATTTGAAAACTGTGTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGCACACTCATAGAAACAACT</pcr_primer_p1>
		<pcr_primer_p2>CATCTAGAAATTCTTTGCTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGGCACACTCATAGAAACAACTGTTCGGAAACTGAATCTCTATCTCGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTGATATACATCCTCTAAATGTGTCATCAATCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATG</canonical_amplicon>
		<polymorphic_amplicon>AGGCACACTCATAGAAACAACTGTTCGGAAACTGAATCTCTATCTCGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTGATATACATCCTCTAAATGTGTCATCAATCTTAAAAATGACRCTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27474</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>337668</contig_pos>
        <strand>+</strand>
        <context>TTATTGGAAG[A/T]GGGGAAGCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAG</left_flank>
        <right_flank>GGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATC</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGTACATGAAAAATATCAAACAATTTATACATTTTGACCTAGTTTGTGATAAGATTTGGTCTCTCTGTCAGTAAAATAATGGTCAATGCACAGTGAAAAAGAGGCGATATCACAAGAAACTCAAAAATATCAAACTCTTGACTCATGACCCCATAACACCAACTTTTTTTACAGAAAACCCCCACTATATAGGACACAAATTTTCGAAAGTGTAAAGGACTCTTTTTGCCTGTGTCAAATGTTTCTCTTCCGTCTCGTAATCTCTCTCACTAACACATATCACCGCCAATCAAAATATTTCGACTCTTTTTCCCGCGTTTTCCATCAGGCACACTCATAGAAACAACTGTTCGGAAACTGAATCTCTATCTCGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTGATATACATCCTCTAAATGTGTCATCAATCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAACATTTGAAAACTGTGTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTC</canonical>
            <polymorphic>CGGTACATGAAAAATATCAAACAATTTATACATTTTGACCTAGTTTGTGATAAGATTTGGTCTCTCTGTCAGTAAAATAATGGTCAATGCACAGTGAAAAAGAGGCGATATCACAAGAAACTCAAAAATATCAAACTCTTGACTCATGACCCCATAACACCAACTTTTTTTACAGAAAACCCCCACTATATAGGACACAAATTTTCGAAAGTGTAAAGGACTCTTTTTGCCTGTGTCAAATGTTTCTCTTCCGTCTCGTAATCTCTCTCACTAACACATATCACCGCCAATCAAAATATTTCGACTCTTTTTCCCGCGTTTTCCATCAGGCACACTCATAGAAACAACTGTTCGGAAACTGAATCTCTATCTCGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTGATATACATCCTCTAAATGTGTCATCAATCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAGWGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAACATTTGAAAACTGTGTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>124 108 106 67 49 49 49 46 42 40 35 32 31 30 26 25 25 22 17 16 12 9 7 7 6 6 5 4 3 2</canonical_bands>
                <polymorphic_bands>154 108 106 67 49 49 49 46 42 40 35 32 31 26 25 25 22 17 16 12 9 7 7 6 6 5 4 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGCACACTCATAGAAACAACT</pcr_primer_p1>
		<pcr_primer_p2>CATCTAGAAATTCTTTGCTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGGCACACTCATAGAAACAACTGTTCGGAAACTGAATCTCTATCTCGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTGATATACATCCTCTAAATGTGTCATCAATCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATG</canonical_amplicon>
		<polymorphic_amplicon>AGGCACACTCATAGAAACAACTGTTCGGAAACTGAATCTCTATCTCGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTGATATACATCCTCTAAATGTGTCATCAATCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAGWGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27475</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>337709</contig_pos>
        <strand>+</strand>
        <context>AAGTTGGAAG[A/G]GGCAAAATCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAG</left_flank>
        <right_flank>GGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGAT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTTGTGATAAGATTTGGTCTCTCTGTCAGTAAAATAATGGTCAATGCACAGTGAAAAAGAGGCGATATCACAAGAAACTCAAAAATATCAAACTCTTGACTCATGACCCCATAACACCAACTTTTTTTACAGAAAACCCCCACTATATAGGACACAAATTTTCGAAAGTGTAAAGGACTCTTTTTGCCTGTGTCAAATGTTTCTCTTCCGTCTCGTAATCTCTCTCACTAACACATATCACCGCCAATCAAAATATTTCGACTCTTTTTCCCGCGTTTTCCATCAGGCACACTCATAGAAACAACTGTTCGGAAACTGAATCTCTATCTCGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTGATATACATCCTCTAAATGTGTCATCAATCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAACATTTGAAAACTGTGTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTCTGTCTGTCCCGATGAGGATCTGTCGACTTTTGAAAAACTTG</canonical>
            <polymorphic>AGTTTGTGATAAGATTTGGTCTCTCTGTCAGTAAAATAATGGTCAATGCACAGTGAAAAAGAGGCGATATCACAAGAAACTCAAAAATATCAAACTCTTGACTCATGACCCCATAACACCAACTTTTTTTACAGAAAACCCCCACTATATAGGACACAAATTTTCGAAAGTGTAAAGGACTCTTTTTGCCTGTGTCAAATGTTTCTCTTCCGTCTCGTAATCTCTCTCACTAACACATATCACCGCCAATCAAAATATTTCGACTCTTTTTCCCGCGTTTTCCATCAGGCACACTCATAGAAACAACTGTTCGGAAACTGAATCTCTATCTCGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTGATATACATCCTCTAAATGTGTCATCAATCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGRGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAACATTTGAAAACTGTGTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTCTGTCTGTCCCGATGAGGATCTGTCGACTTTTGAAAAACTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACATCCTCTAAATGTGTCATCA</pcr_primer_p1>
		<pcr_primer_p2>TAATCTTTACATCTCTGCGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>TACATCCTCTAAATGTGTCATCAATCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTA</canonical_amplicon>
		<polymorphic_amplicon>TACATCCTCTAAATGTGTCATCAATCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGRGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27476</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>337782</contig_pos>
        <strand>+</strand>
        <context>GACGAGAGAG[A/G]GAGGAARAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAG</left_flank>
        <right_flank>GAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAACTCAAAAATATCAAACTCTTGACTCATGACCCCATAACACCAACTTTTTTTACAGAAAACCCCCACTATATAGGACACAAATTTTCGAAAGTGTAAAGGACTCTTTTTGCCTGTGTCAAATGTTTCTCTTCCGTCTCGTAATCTCTCTCACTAACACATATCACCGCCAATCAAAATATTTCGACTCTTTTTCCCGCGTTTTCCATCAGGCACACTCATAGAAACAACTGTTCGGAAACTGAATCTCTATCTCGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTGATATACATCCTCTAAATGTGTCATCAATCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAACATTTGAAAACTGTGTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTCTGTCTGTCCCGATGAGGATCTGTCGACTTTTGAAAAACTTGAAAAATAAAAATAGCTTGACGTGGCCCTTTAAGAAAAAATTAGGAGTGGAGCTGGTGATAAATAATTTATCAG</canonical>
            <polymorphic>AAGAAACTCAAAAATATCAAACTCTTGACTCATGACCCCATAACACCAACTTTTTTTACAGAAAACCCCCACTATATAGGACACAAATTTTCGAAAGTGTAAAGGACTCTTTTTGCCTGTGTCAAATGTTTCTCTTCCGTCTCGTAATCTCTCTCACTAACACATATCACCGCCAATCAAAATATTTCGACTCTTTTTCCCGCGTTTTCCATCAGGCACACTCATAGAAACAACTGTTCGGAAACTGAATCTCTATCTCGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTGATATACATCCTCTAAATGTGTCATCAATCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGRGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAACATTTGAAAACTGTGTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTCTGTCTGTCCCGATGAGGATCTGTCGACTTTTGAAAAACTTGAAAAATAAAAATAGCTTGACGTGGCCCTTTAAGAAAAAATTAGGAGTGGAGCTGGTGATAAATAATTTATCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATTTTGTCTTTTTGAAAGTTG</pcr_primer_p1>
		<pcr_primer_p2>CAGTTCTTGTCTATACCAGCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTG</canonical_amplicon>
		<polymorphic_amplicon>AGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGRGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27477</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>337789</contig_pos>
        <strand>+</strand>
        <context>GAGRGAGGAA[A/G]AGTGAGGGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAA</left_flank>
        <right_flank>AGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAAATATCAAACTCTTGACTCATGACCCCATAACACCAACTTTTTTTACAGAAAACCCCCACTATATAGGACACAAATTTTCGAAAGTGTAAAGGACTCTTTTTGCCTGTGTCAAATGTTTCTCTTCCGTCTCGTAATCTCTCTCACTAACACATATCACCGCCAATCAAAATATTTCGACTCTTTTTCCCGCGTTTTCCATCAGGCACACTCATAGAAACAACTGTTCGGAAACTGAATCTCTATCTCGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTGATATACATCCTCTAAATGTGTCATCAATCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAACATTTGAAAACTGTGTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTCTGTCTGTCCCGATGAGGATCTGTCGACTTTTGAAAAACTTGAAAAATAAAAATAGCTTGACGTGGCCCTTTAAGAAAAAATTAGGAGTGGAGCTGGTGATAAATAATTTATCAGTTGACAA</canonical>
            <polymorphic>TCAAAAATATCAAACTCTTGACTCATGACCCCATAACACCAACTTTTTTTACAGAAAACCCCCACTATATAGGACACAAATTTTCGAAAGTGTAAAGGACTCTTTTTGCCTGTGTCAAATGTTTCTCTTCCGTCTCGTAATCTCTCTCACTAACACATATCACCGCCAATCAAAATATTTCGACTCTTTTTCCCGCGTTTTCCATCAGGCACACTCATAGAAACAACTGTTCGGAAACTGAATCTCTATCTCGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTGATATACATCCTCTAAATGTGTCATCAATCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAARAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAACATTTGAAAACTGTGTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTCTGTCTGTCCCGATGAGGATCTGTCGACTTTTGAAAAACTTGAAAAATAAAAATAGCTTGACGTGGCCCTTTAAGAAAAAATTAGGAGTGGAGCTGGTGATAAATAATTTATCAGTTGACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATTTTGTCTTTTTGAAAGTTG</pcr_primer_p1>
		<pcr_primer_p2>CAGTTCTTGTCTATACCAGCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTG</canonical_amplicon>
		<polymorphic_amplicon>AGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAARAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27478</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>337841</contig_pos>
        <strand>+</strand>
        <context>ATCTGGAATG[G/T]GAAAAAGAWC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATG</left_flank>
        <right_flank>GAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAAACCCCCACTATATAGGACACAAATTTTCGAAAGTGTAAAGGACTCTTTTTGCCTGTGTCAAATGTTTCTCTTCCGTCTCGTAATCTCTCTCACTAACACATATCACCGCCAATCAAAATATTTCGACTCTTTTTCCCGCGTTTTCCATCAGGCACACTCATAGAAACAACTGTTCGGAAACTGAATCTCTATCTCGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTGATATACATCCTCTAAATGTGTCATCAATCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAACATTTGAAAACTGTGTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTCTGTCTGTCCCGATGAGGATCTGTCGACTTTTGAAAAACTTGAAAAATAAAAATAGCTTGACGTGGCCCTTTAAGAAAAAATTAGGAGTGGAGCTGGTGATAAATAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGAAATCGAGATAATTGAGTTAAAGGCTGACGGT</canonical>
            <polymorphic>AGAAAACCCCCACTATATAGGACACAAATTTTCGAAAGTGTAAAGGACTCTTTTTGCCTGTGTCAAATGTTTCTCTTCCGTCTCGTAATCTCTCTCACTAACACATATCACCGCCAATCAAAATATTTCGACTCTTTTTCCCGCGTTTTCCATCAGGCACACTCATAGAAACAACTGTTCGGAAACTGAATCTCTATCTCGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTGATATACATCCTCTAAATGTGTCATCAATCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGKGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAACATTTGAAAACTGTGTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTCTGTCTGTCCCGATGAGGATCTGTCGACTTTTGAAAAACTTGAAAAATAAAAATAGCTTGACGTGGCCCTTTAAGAAAAAATTAGGAGTGGAGCTGGTGATAAATAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGAAATCGAGATAATTGAGTTAAAGGCTGACGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>124 108 106 75 70 67 49 49 40 35 32 31 30 25 25 25 22 16 12 12 9 9 7 7 6 4 3 2</canonical_bands>
                <polymorphic_bands>124 108 106 75 74 70 67 49 40 35 32 31 30 25 25 22 16 12 12 9 9 7 7 6 4 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCGGAAAAATGATAGATTGATA</pcr_primer_p1>
		<pcr_primer_p2>GAGTTCACCACCAGTCACTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTC</canonical_amplicon>
		<polymorphic_amplicon>CTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGKGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27479</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>337850</contig_pos>
        <strand>+</strand>
        <context>GKGAAAAAGA[A/T]CTGATAGAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGA</left_flank>
        <right_flank>CTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACTATATAGGACACAAATTTTCGAAAGTGTAAAGGACTCTTTTTGCCTGTGTCAAATGTTTCTCTTCCGTCTCGTAATCTCTCTCACTAACACATATCACCGCCAATCAAAATATTTCGACTCTTTTTCCCGCGTTTTCCATCAGGCACACTCATAGAAACAACTGTTCGGAAACTGAATCTCTATCTCGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTGATATACATCCTCTAAATGTGTCATCAATCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAACATTTGAAAACTGTGTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTCTGTCTGTCCCGATGAGGATCTGTCGACTTTTGAAAAACTTGAAAAATAAAAATAGCTTGACGTGGCCCTTTAAGAAAAAATTAGGAGTGGAGCTGGTGATAAATAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGAAATCGAGATAATTGAGTTAAAGGCTGACGGTTTGGGTGGG</canonical>
            <polymorphic>CCACTATATAGGACACAAATTTTCGAAAGTGTAAAGGACTCTTTTTGCCTGTGTCAAATGTTTCTCTTCCGTCTCGTAATCTCTCTCACTAACACATATCACCGCCAATCAAAATATTTCGACTCTTTTTCCCGCGTTTTCCATCAGGCACACTCATAGAAACAACTGTTCGGAAACTGAATCTCTATCTCGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTGATATACATCCTCTAAATGTGTCATCAATCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAWCTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAACATTTGAAAACTGTGTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTCTGTCTGTCCCGATGAGGATCTGTCGACTTTTGAAAAACTTGAAAAATAAAAATAGCTTGACGTGGCCCTTTAAGAAAAAATTAGGAGTGGAGCTGGTGATAAATAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGAAATCGAGATAATTGAGTTAAAGGCTGACGGTTTGGGTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGGAAAAATGATAGATTGATA</pcr_primer_p1>
		<pcr_primer_p2>GAGTTCACCACCAGTCACTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTC</canonical_amplicon>
		<polymorphic_amplicon>CTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAWCTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27480</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>337873</contig_pos>
        <strand>+</strand>
        <context>GAGCACAGCT[A/T]AATGCATTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCT</left_flank>
        <right_flank>AATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAAAGTGTAAAGGACTCTTTTTGCCTGTGTCAAATGTTTCTCTTCCGTCTCGTAATCTCTCTCACTAACACATATCACCGCCAATCAAAATATTTCGACTCTTTTTCCCGCGTTTTCCATCAGGCACACTCATAGAAACAACTGTTCGGAAACTGAATCTCTATCTCGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTGATATACATCCTCTAAATGTGTCATCAATCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAACATTTGAAAACTGTGTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTCTGTCTGTCCCGATGAGGATCTGTCGACTTTTGAAAAACTTGAAAAATAAAAATAGCTTGACGTGGCCCTTTAAGAAAAAATTAGGAGTGGAGCTGGTGATAAATAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGAAATCGAGATAATTGAGTTAAAGGCTGACGGTTTGGGTGGGCTCCTGGCAAATGAAATAACTCC</canonical>
            <polymorphic>CGAAAGTGTAAAGGACTCTTTTTGCCTGTGTCAAATGTTTCTCTTCCGTCTCGTAATCTCTCTCACTAACACATATCACCGCCAATCAAAATATTTCGACTCTTTTTCCCGCGTTTTCCATCAGGCACACTCATAGAAACAACTGTTCGGAAACTGAATCTCTATCTCGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTGATATACATCCTCTAAATGTGTCATCAATCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTWAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAACATTTGAAAACTGTGTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTCTGTCTGTCCCGATGAGGATCTGTCGACTTTTGAAAAACTTGAAAAATAAAAATAGCTTGACGTGGCCCTTTAAGAAAAAATTAGGAGTGGAGCTGGTGATAAATAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGAAATCGAGATAATTGAGTTAAAGGCTGACGGTTTGGGTGGGCTCCTGGCAAATGAAATAACTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>357 247 197 65 55 46 24 9</canonical_bands>
                <polymorphic_bands>357 247 197 65 64 46 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCGGAAAAATGATAGATTGATA</pcr_primer_p1>
		<pcr_primer_p2>GAGTTCACCACCAGTCACTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTC</canonical_amplicon>
		<polymorphic_amplicon>CTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTWAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27481</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>337931</contig_pos>
        <strand>+</strand>
        <context>ACTGAGATAG[A/T]GTGTAACAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAG</left_flank>
        <right_flank>GTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCTCACTAACACATATCACCGCCAATCAAAATATTTCGACTCTTTTTCCCGCGTTTTCCATCAGGCACACTCATAGAAACAACTGTTCGGAAACTGAATCTCTATCTCGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTGATATACATCCTCTAAATGTGTCATCAATCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAACATTTGAAAACTGTGTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTCTGTCTGTCCCGATGAGGATCTGTCGACTTTTGAAAAACTTGAAAAATAAAAATAGCTTGACGTGGCCCTTTAAGAAAAAATTAGGAGTGGAGCTGGTGATAAATAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGAAATCGAGATAATTGAGTTAAAGGCTGACGGTTTGGGTGGGCTCCTGGCAAATGAAATAACTCCCTTCAAAATCACTATTTTTGATCGGTTCAATTAGTTATGAGGTTCTGGGGAAAACGAA</canonical>
            <polymorphic>TCTCTCACTAACACATATCACCGCCAATCAAAATATTTCGACTCTTTTTCCCGCGTTTTCCATCAGGCACACTCATAGAAACAACTGTTCGGAAACTGAATCTCTATCTCGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTGATATACATCCTCTAAATGTGTCATCAATCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGWGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAACATTTGAAAACTGTGTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTCTGTCTGTCCCGATGAGGATCTGTCGACTTTTGAAAAACTTGAAAAATAAAAATAGCTTGACGTGGCCCTTTAAGAAAAAATTAGGAGTGGAGCTGGTGATAAATAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGAAATCGAGATAATTGAGTTAAAGGCTGACGGTTTGGGTGGGCTCCTGGCAAATGAAATAACTCCCTTCAAAATCACTATTTTTGATCGGTTCAATTAGTTATGAGGTTCTGGGGAAAACGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGGAAAAATGATAGATTGATA</pcr_primer_p1>
		<pcr_primer_p2>GAGTTCACCACCAGTCACTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTC</canonical_amplicon>
		<polymorphic_amplicon>CTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGWGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27482</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>337958</contig_pos>
        <strand>+</strand>
        <context>TGAGTCAATG[A/G]AAAAGTCACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATG</left_flank>
        <right_flank>AAAAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAATATTTCGACTCTTTTTCCCGCGTTTTCCATCAGGCACACTCATAGAAACAACTGTTCGGAAACTGAATCTCTATCTCGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTGATATACATCCTCTAAATGTGTCATCAATCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAACATTTGAAAACTGTGTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTCTGTCTGTCCCGATGAGGATCTGTCGACTTTTGAAAAACTTGAAAAATAAAAATAGCTTGACGTGGCCCTTTAAGAAAAAATTAGGAGTGGAGCTGGTGATAAATAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGAAATCGAGATAATTGAGTTAAAGGCTGACGGTTTGGGTGGGCTCCTGGCAAATGAAATAACTCCCTTCAAAATCACTATTTTTGATCGGTTCAATTAGTTATGAGGTTCTGGGGAAAACGAACTAATTCGGCTCATAGCATTCTTCAAG</canonical>
            <polymorphic>TCAAAATATTTCGACTCTTTTTCCCGCGTTTTCCATCAGGCACACTCATAGAAACAACTGTTCGGAAACTGAATCTCTATCTCGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTGATATACATCCTCTAAATGTGTCATCAATCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGRAAAAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAACATTTGAAAACTGTGTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTCTGTCTGTCCCGATGAGGATCTGTCGACTTTTGAAAAACTTGAAAAATAAAAATAGCTTGACGTGGCCCTTTAAGAAAAAATTAGGAGTGGAGCTGGTGATAAATAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGAAATCGAGATAATTGAGTTAAAGGCTGACGGTTTGGGTGGGCTCCTGGCAAATGAAATAACTCCCTTCAAAATCACTATTTTTGATCGGTTCAATTAGTTATGAGGTTCTGGGGAAAACGAACTAATTCGGCTCATAGCATTCTTCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGACGCAGAGATGTAAAGATTA</pcr_primer_p1>
		<pcr_primer_p2>ACTCTAGCCCAAAAGCTGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAACATTTGAAAACTGTGTACAGCTTTTGGGCTAGAGT</canonical_amplicon>
		<polymorphic_amplicon>GAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGRAAAAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAACATTTGAAAACTGTGTACAGCTTTTGGGCTAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27483</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>338012</contig_pos>
        <strand>+</strand>
        <context>GGTCTGCAAC[A/C]TTTGAAAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAAC</left_flank>
        <right_flank>TTTGAAAACTGTGTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACTGTTCGGAAACTGAATCTCTATCTCGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTGATATACATCCTCTAAATGTGTCATCAATCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAACATTTGAAAACTGTGTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTCTGTCTGTCCCGATGAGGATCTGTCGACTTTTGAAAAACTTGAAAAATAAAAATAGCTTGACGTGGCCCTTTAAGAAAAAATTAGGAGTGGAGCTGGTGATAAATAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGAAATCGAGATAATTGAGTTAAAGGCTGACGGTTTGGGTGGGCTCCTGGCAAATGAAATAACTCCCTTCAAAATCACTATTTTTGATCGGTTCAATTAGTTATGAGGTTCTGGGGAAAACGAACTAATTCGGCTCATAGCATTCTTCAAGACCAACATTATTTGCTCATTTAAACACTGAAATGTAAAATTTGAATTCGTTAAA</canonical>
            <polymorphic>CAACTGTTCGGAAACTGAATCTCTATCTCGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAACTGATATACATCCTCTAAATGTGTCATCAATCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAACMTTTGAAAACTGTGTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTCTGTCTGTCCCGATGAGGATCTGTCGACTTTTGAAAAACTTGAAAAATAAAAATAGCTTGACGTGGCCCTTTAAGAAAAAATTAGGAGTGGAGCTGGTGATAAATAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGAAATCGAGATAATTGAGTTAAAGGCTGACGGTTTGGGTGGGCTCCTGGCAAATGAAATAACTCCCTTCAAAATCACTATTTTTGATCGGTTCAATTAGTTATGAGGTTCTGGGGAAAACGAACTAATTCGGCTCATAGCATTCTTCAAGACCAACATTATTTGCTCATTTAAACACTGAAATGTAAAATTTGAATTCGTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCACCAAAAGTGACTGGT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGAAGGGAGTTATTTCATT</pcr_primer_p2>
		<pcr_amplicon_size>422</pcr_amplicon_size>
		<canonical_amplicon>AAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAACATTTGAAAACTGTGTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTCTGTCTGTCCCGATGAGGATCTGTCGACTTTTGAAAAACTTGAAAAATAAAAATAGCTTGACGTGGCCCTTTAAGAAAAAATTAGGAGTGGAGCTGGTGATAAATAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGAAATCGAGATAATTGAGTTAAAGGCTGACGGTTTGGGTGGGCTCCTGGCAAATGAAATAACTCCCTTCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAACMTTTGAAAACTGTGTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTCTGTCTGTCCCGATGAGGATCTGTCGACTTTTGAAAAACTTGAAAAATAAAAATAGCTTGACGTGGCCCTTTAAGAAAAAATTAGGAGTGGAGCTGGTGATAAATAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGAAATCGAGATAATTGAGTTAAAGGCTGACGGTTTGGGTGGGCTCCTGGCAAATGAAATAACTCCCTTCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27484</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>338082</contig_pos>
        <strand></strand>
        <context>gcaattatct[C/T]cgtttctata</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCT</left_flank>
        <right_flank>CGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAACTGATATACATCCTCTAAATGTGTCATCAATCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAACATTTGAAAACTGTGTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTCTGTCTGTCCCGATGAGGATCTGTCGACTTTTGAAAAACTTGAAAAATAAAAATAGCTTGACGTGGCCCTTTAAGAAAAAATTAGGAGTGGAGCTGGTGATAAATAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGAAATCGAGATAATTGAGTTAAAGGCTGACGGTTTGGGTGGGCTCCTGGCAAATGAAATAACTCCCTTCAAAATCACTATTTTTGATCGGTTCAATTAGTTATGAGGTTCTGGGGAAAACGAACTAATTCGGCTCATAGCATTCTTCAAGACCAACATTATTTGCTCATTTAAACACTGAAATGTAAAATTTGAATTCGTTAAAACGTGTTAGGTCCACAGGAAAACGGTTTCCAACAATCCTAAGTCACCGCCGTTTACCGAAAGTGCTTTAA</canonical>
            <polymorphic>CTCAACTGATATACATCCTCTAAATGTGTCATCAATCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAACATTTGAAAACTGTGTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTYCGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTCTGTCTGTCCCGATGAGGATCTGTCGACTTTTGAAAAACTTGAAAAATAAAAATAGCTTGACGTGGCCCTTTAAGAAAAAATTAGGAGTGGAGCTGGTGATAAATAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGAAATCGAGATAATTGAGTTAAAGGCTGACGGTTTGGGTGGGCTCCTGGCAAATGAAATAACTCCCTTCAAAATCACTATTTTTGATCGGTTCAATTAGTTATGAGGTTCTGGGGAAAACGAACTAATTCGGCTCATAGCATTCTTCAAGACCAACATTATTTGCTCATTTAAACACTGAAATGTAAAATTTGAATTCGTTAAAACGTGTTAGGTCCACAGGAAAACGGTTTCCAACAATCCTAAGTCACCGCCGTTTACCGAAAGTGCTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACAGCTTTTGGGCTAGAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGAAGGGAGTTATTTCATT</pcr_primer_p2>
		<pcr_amplicon_size>358</pcr_amplicon_size>
		<canonical_amplicon>GTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTCTGTCTGTCCCGATGAGGATCTGTCGACTTTTGAAAAACTTGAAAAATAAAAATAGCTTGACGTGGCCCTTTAAGAAAAAATTAGGAGTGGAGCTGGTGATAAATAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGAAATCGAGATAATTGAGTTAAAGGCTGACGGTTTGGGTGGGCTCCTGGCAAATGAAATAACTCCCTTCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>GTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTYCGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTCTGTCTGTCCCGATGAGGATCTGTCGACTTTTGAAAAACTTGAAAAATAAAAATAGCTTGACGTGGCCCTTTAAGAAAAAATTAGGAGTGGAGCTGGTGATAAATAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGAAATCGAGATAATTGAGTTAAAGGCTGACGGTTTGGGTGGGCTCCTGGCAAATGAAATAACTCCCTTCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27485</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>338108</contig_pos>
        <strand></strand>
        <context>tatcaaaaat[G/A]kgtcaactga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAAT</left_flank>
        <right_flank>GGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCATCAATCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAACATTTGAAAACTGTGTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTCTGTCTGTCCCGATGAGGATCTGTCGACTTTTGAAAAACTTGAAAAATAAAAATAGCTTGACGTGGCCCTTTAAGAAAAAATTAGGAGTGGAGCTGGTGATAAATAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGAAATCGAGATAATTGAGTTAAAGGCTGACGGTTTGGGTGGGCTCCTGGCAAATGAAATAACTCCCTTCAAAATCACTATTTTTGATCGGTTCAATTAGTTATGAGGTTCTGGGGAAAACGAACTAATTCGGCTCATAGCATTCTTCAAGACCAACATTATTTGCTCATTTAAACACTGAAATGTAAAATTTGAATTCGTTAAAACGTGTTAGGTCCACAGGAAAACGGTTTCCAACAATCCTAAGTCACCGCCGTTTACCGAAAGTGCTTTAATTGAATGCCACACAACTTTGTGTGCA</canonical>
            <polymorphic>TGTCATCAATCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAACATTTGAAAACTGTGTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATRGGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTCTGTCTGTCCCGATGAGGATCTGTCGACTTTTGAAAAACTTGAAAAATAAAAATAGCTTGACGTGGCCCTTTAAGAAAAAATTAGGAGTGGAGCTGGTGATAAATAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGAAATCGAGATAATTGAGTTAAAGGCTGACGGTTTGGGTGGGCTCCTGGCAAATGAAATAACTCCCTTCAAAATCACTATTTTTGATCGGTTCAATTAGTTATGAGGTTCTGGGGAAAACGAACTAATTCGGCTCATAGCATTCTTCAAGACCAACATTATTTGCTCATTTAAACACTGAAATGTAAAATTTGAATTCGTTAAAACGTGTTAGGTCCACAGGAAAACGGTTTCCAACAATCCTAAGTCACCGCCGTTTACCGAAAGTGCTTTAATTGAATGCCACACAACTTTGTGTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACAGCTTTTGGGCTAGAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGAAGGGAGTTATTTCATT</pcr_primer_p2>
		<pcr_amplicon_size>358</pcr_amplicon_size>
		<canonical_amplicon>GTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTCTGTCTGTCCCGATGAGGATCTGTCGACTTTTGAAAAACTTGAAAAATAAAAATAGCTTGACGTGGCCCTTTAAGAAAAAATTAGGAGTGGAGCTGGTGATAAATAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGAAATCGAGATAATTGAGTTAAAGGCTGACGGTTTGGGTGGGCTCCTGGCAAATGAAATAACTCCCTTCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>GTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATRGGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTCTGTCTGTCCCGATGAGGATCTGTCGACTTTTGAAAAACTTGAAAAATAAAAATAGCTTGACGTGGCCCTTTAAGAAAAAATTAGGAGTGGAGCTGGTGATAAATAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGAAATCGAGATAATTGAGTTAAAGGCTGACGGTTTGGGTGGGCTCCTGGCAAATGAAATAACTCCCTTCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27486</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>338109</contig_pos>
        <strand></strand>
        <context>atcaaaaatr[G/T]gtcaactgat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATG</left_flank>
        <right_flank>GTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCATCAATCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAACATTTGAAAACTGTGTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTCTGTCTGTCCCGATGAGGATCTGTCGACTTTTGAAAAACTTGAAAAATAAAAATAGCTTGACGTGGCCCTTTAAGAAAAAATTAGGAGTGGAGCTGGTGATAAATAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGAAATCGAGATAATTGAGTTAAAGGCTGACGGTTTGGGTGGGCTCCTGGCAAATGAAATAACTCCCTTCAAAATCACTATTTTTGATCGGTTCAATTAGTTATGAGGTTCTGGGGAAAACGAACTAATTCGGCTCATAGCATTCTTCAAGACCAACATTATTTGCTCATTTAAACACTGAAATGTAAAATTTGAATTCGTTAAAACGTGTTAGGTCCACAGGAAAACGGTTTCCAACAATCCTAAGTCACCGCCGTTTACCGAAAGTGCTTTAATTGAATGCCACACAACTTTGTGTGCAA</canonical>
            <polymorphic>GTCATCAATCTTAAAAATGACGCTCACGTGTCAAAATATATATCGAGATTATTGGAAGTGGGGAAGCCGAAAAGATTTTGTCTTTTTGAAAGTTGGAAGAGGCAAAATCAGAAGCAAAGAATTTCTAGATGTCTCGGAAAAATGATAGATTGATATTGAAACGACGAGAGAGAGAGGAAAAGTGAGGGAGACGCAGAGATGTAAAGATTAATGATTCATTGATCTGGAATGTGAAAAAGAACTGATAGAGGGGGAGCACAGCTTAATGCATTTAAGAGAATGAAAAAAGTTAGAAGCTGGTATAGACAAGAACTGAGATAGAGTGTAACAGTACTGTATGAGTCAATGAAAAAGTCACCAAAAGTGACTGGTGGTGAACTCGCTCAAGGTAAGGTCTGCAACATTTGAAAACTGTGTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATGKGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTCTGTCTGTCCCGATGAGGATCTGTCGACTTTTGAAAAACTTGAAAAATAAAAATAGCTTGACGTGGCCCTTTAAGAAAAAATTAGGAGTGGAGCTGGTGATAAATAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGAAATCGAGATAATTGAGTTAAAGGCTGACGGTTTGGGTGGGCTCCTGGCAAATGAAATAACTCCCTTCAAAATCACTATTTTTGATCGGTTCAATTAGTTATGAGGTTCTGGGGAAAACGAACTAATTCGGCTCATAGCATTCTTCAAGACCAACATTATTTGCTCATTTAAACACTGAAATGTAAAATTTGAATTCGTTAAAACGTGTTAGGTCCACAGGAAAACGGTTTCCAACAATCCTAAGTCACCGCCGTTTACCGAAAGTGCTTTAATTGAATGCCACACAACTTTGTGTGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACAGCTTTTGGGCTAGAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGAAGGGAGTTATTTCATT</pcr_primer_p2>
		<pcr_amplicon_size>358</pcr_amplicon_size>
		<canonical_amplicon>GTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATGGGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTCTGTCTGTCCCGATGAGGATCTGTCGACTTTTGAAAAACTTGAAAAATAAAAATAGCTTGACGTGGCCCTTTAAGAAAAAATTAGGAGTGGAGCTGGTGATAAATAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGAAATCGAGATAATTGAGTTAAAGGCTGACGGTTTGGGTGGGCTCCTGGCAAATGAAATAACTCCCTTCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>GTACAGCTTTTGGGCTAGAGTCTAGTAGCTCATGAGCAACTTTGAGCGCAATTATCTCCGTTTCTATAAGAGATATCAAAAATGKGTCAACTGATAAAATGATGGTGACATTATCTTCCTTATATATAAAATGCTACACGCGTCTGTCTGTCCCGATGAGGATCTGTCGACTTTTGAAAAACTTGAAAAATAAAAATAGCTTGACGTGGCCCTTTAAGAAAAAATTAGGAGTGGAGCTGGTGATAAATAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGAAATCGAGATAATTGAGTTAAAGGCTGACGGTTTGGGTGGGCTCCTGGCAAATGAAATAACTCCCTTCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27487</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>342102</contig_pos>
        <strand>+</strand>
        <context>AAATTCAGGG[A/T]AAAAATCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGCCATCTGTCTCCATTAGAACATGTCCTTCAGAATTCAAAATTCAGGG</left_flank>
        <right_flank>AAAAATCAAAAAAAAAAAATTGAAAAGATGCAAAACAGTAAACGTAGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATTCGCAAATACCAAACATATAATTTTCTGTCTGAACGGCTGAAAAAGCTGAAATTTGGAGCAATTTCGTTTCAAAAAGTTTGTCACATTCATCAAAAAAAATTCCACAAAAACGAAATCAAAAAGAACAATAAAACATCATCACAACCTCACGCTCCCTAAATCTCTTCCTATCCAATTATCTTTTTTTCAATTTCAAATAAATTTCACTCCATTATGACACATAACCTGTTTGACCTATTCAAACAGGAAAACCTCCGATTTCGAAAAAAAAATTCAAAAAAAATTGTCGAGTTTTTGAATTCCAGATTTCCGAATTGTGGATTTTTGAACTTTTTTACGAATTTAAAAAATGGATTTTAGAAAAAGGGGAGAAAAAGAGGCTGAATGAGACACGAAAAATATTTTTAATCAAAGAAAGTAGTGTCCTAGTTTTGAATATTTTATGAGCCATCTGTCTCCATTAGAACATGTCCTTCAGAATTCAAAATTCAGGGAAAAAATCAAAAAAAAAAAATTGAAAAGATGCAAAACAGTAAACGTAGTTTTTCCTTGTGTCTAAAAATTTTTCTCGCAATCAGAAGACTAGAAAAAAGAAAAAGAAAAAGAGAGAATTTTCAATTTTGTGCAAATCAAATCGGAACTTTTTTCTTTGTCTTTTGTCTTCTCTTTTTTTTCGTTTCGTTGAAATTTTTATCGAATTTTAGGGAGAAAGGGTTACTAGCTTTTTTGTTTTTTTTTGTGTTGCGATCTGAGAATTTCCGAATTTCAGAATTTTCATGATTTTTGTAGTTTCAGACTTTTAGAACTTCAGGATTTCAGAATCTCAGAATCCTCAGAATCTCAGAATCCTCAGAATCTCAGAATATCAGAATATCAGAATCTCAGAATCTAAGCATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTAAGCATCTCAGACTCTCAGGTCTTTTATGACTATCAAAATTCAGATTTT</canonical>
            <polymorphic>ACATTCGCAAATACCAAACATATAATTTTCTGTCTGAACGGCTGAAAAAGCTGAAATTTGGAGCAATTTCGTTTCAAAAAGTTTGTCACATTCATCAAAAAAAATTCCACAAAAACGAAATCAAAAAGAACAATAAAACATCATCACAACCTCACGCTCCCTAAATCTCTTCCTATCCAATTATCTTTTTTTCAATTTCAAATAAATTTCACTCCATTATGACACATAACCTGTTTGACCTATTCAAACAGGAAAACCTCCGATTTCGAAAAAAAAATTCAAAAAAAATTGTCGAGTTTTTGAATTCCAGATTTCCGAATTGTGGATTTTTGAACTTTTTTACGAATTTAAAAAATGGATTTTAGAAAAAGGGGAGAAAAAGAGGCTGAATGAGACACGAAAAATATTTTTAATCAAAGAAAGTAGTGTCCTAGTTTTGAATATTTTATGAGCCATCTGTCTCCATTAGAACATGTCCTTCAGAATTCAAAATTCAGGGWAAAAATCAAAAAAAAAAAATTGAAAAGATGCAAAACAGTAAACGTAGTTTTTCCTTGTGTCTAAAAATTTTTCTCGCAATCAGAAGACTAGAAAAAAGAAAAAGAAAAAGAGAGAATTTTCAATTTTGTGCAAATCAAATCGGAACTTTTTTCTTTGTCTTTTGTCTTCTCTTTTTTTTCGTTTCGTTGAAATTTTTATCGAATTTTAGGGAGAAAGGGTTACTAGCTTTTTTGTTTTTTTTTGTGTTGCGATCTGAGAATTTCCGAATTTCAGAATTTTCATGATTTTTGTAGTTTCAGACTTTTAGAACTTCAGGATTTCAGAATCTCAGAATCCTCAGAATCTCAGAATCCTCAGAATCTCAGAATATCAGAATATCAGAATCTCAGAATCTAAGCATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTAAGCATCTCAGACTCTCAGGTCTTTTATGACTATCAAAATTCAGATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAATATTTTATGAGCCATCT</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGAGAAGACAAAAGACAAA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTTGAATATTTTATGAGCCATCTGTCTCCATTAGAACATGTCCTTCAGAATTCAAAATTCAGGGAAAAAATCAAAAAAAAAAAATTGAAAAGATGCAAAACAGTAAACGTAGTTTTTCCTTGTGTCTAAAAATTTTTCTCGCAATCAGAAGACTAGAAAAAAGAAAAAGAAAAAGAGAGAATTTTCAATTTTGTGCAAATCAAATCGGAACTTTTTTCTTTGTCTTTTGTCTTCTCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAATATTTTATGAGCCATCTGTCTCCATTAGAACATGTCCTTCAGAATTCAAAATTCAGGGWAAAAATCAAAAAAAAAAAATTGAAAAGATGCAAAACAGTAAACGTAGTTTTTCCTTGTGTCTAAAAATTTTTCTCGCAATCAGAAGACTAGAAAAAAGAAAAAGAAAAAGAGAGAATTTTCAATTTTGTGCAAATCAAATCGGAACTTTTTTCTTTGTCTTTTGTCTTCTCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27488</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>343444</contig_pos>
        <strand></strand>
        <context>tgatagcttt[C/T]ataggaaytc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATCATATAATCACCTAAGTTTCATCAATGAACACATTTTTGATAGCTTT</left_flank>
        <right_flank>ATAGGAATTCAGATAAATTGGTTGAAAGTTAAAATACTCACTGTCCGTCC</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGTCCAAAATGATTCTTTGTGCAGCCATTTTTGCTTGGTAATGGATCAGACGGCCCTTTCCGCCGGACACAATTATACTGAAAATTAAAAATGTGTACTTAAAACCATACTTGCAAAATCAGGGCCCGGCCCGGGTTTTCCAAATTTGAAATTTTTTTTTTGAAATTTCAGAAATTTTTTCAAATTTTTTTGTAGAAGAACTATTTTTTATGCGCACTCTTATCTTGAAAATTTTTTTTCTTGTCCATTTTTTTCTGTTAACCCCAAAAAATTTTTTGAAATACAGAAAAAATTTTTCCAAAAATCTGAAAATCCTGAAAACAGCCCGGCCCGGCCCGTTTCAAGTATGCTTAAAACCTGTAATAGAAGCCCCCCATTGTCAGGTTTGAGGCAATTTATCTAGGTTCCTGTAAAAGATATGAAAAAGTTGTCAACTGATAAAATGTTTATCATATAATCACCTAAGTTTCATCAATGAACACATTTTTGATAGCTTTCATAGGAATTCAGATAAATTGGTTGAAAGTTAAAATACTCACTGTCCGTCCGGATATGTGCAGACTTGAAGATTGTCAGCTTCCAGTGGCACGTCCTCGTTCCAAAAGGGTTTTAGGACTATAAATCAAAATTTTCAGAATATTTTAGAATCTTCTAGACTTACCATTGATCCCATCTTCCTCGATTTTCCAAAGCCTTATCTGTTTATCCGCTGAAACTGATACCAGCAATCGTTTGGCTCCATCCAGTTGCACCAATGACAAAGAAGTCACATTGCCTTCATGACCGCGAACCTCTTTGGACATTCTCGAGTTTCGAATGTCGTATGACTGTAATTTTAATTCATGAAATAATGATTACATTAATTAGTGGTACCGTAATTTCACACCCATCATGGTTAAACCCGTTGGAGCAGGAGAATAGTCGGTTAACGCCATCAAACTCGCAGTACATTTGGATGTGACGTTTTCGTGGGAATTCCATGACAACTGCCAGAGAGC</canonical>
            <polymorphic>AACGTCCAAAATGATTCTTTGTGCAGCCATTTTTGCTTGGTAATGGATCAGACGGCCCTTTCCGCCGGACACAATTATACTGAAAATTAAAAATGTGTACTTAAAACCATACTTGCAAAATCAGGGCCCGGCCCGGGTTTTCCAAATTTGAAATTTTTTTTTTGAAATTTCAGAAATTTTTTCAAATTTTTTTGTAGAAGAACTATTTTTTATGCGCACTCTTATCTTGAAAATTTTTTTTCTTGTCCATTTTTTTCTGTTAACCCCAAAAAATTTTTTGAAATACAGAAAAAATTTTTCCAAAAATCTGAAAATCCTGAAAACAGCCCGGCCCGGCCCGTTTCAAGTATGCTTAAAACCTGTAATAGAAGCCCCCCATTGTCAGGTTTGAGGCAATTTATCTAGGTTCCTGTAAAAGATATGAAAAAGTTGTCAACTGATAAAATGTTTATCATATAATCACCTAAGTTTCATCAATGAACACATTTTTGATAGCTTTYATAGGAATTCAGATAAATTGGTTGAAAGTTAAAATACTCACTGTCCGTCCGGATATGTGCAGACTTGAAGATTGTCAGCTTCCAGTGGCACGTCCTCGTTCCAAAAGGGTTTTAGGACTATAAATCAAAATTTTCAGAATATTTTAGAATCTTCTAGACTTACCATTGATCCCATCTTCCTCGATTTTCCAAAGCCTTATCTGTTTATCCGCTGAAACTGATACCAGCAATCGTTTGGCTCCATCCAGTTGCACCAATGACAAAGAAGTCACATTGCCTTCATGACCGCGAACCTCTTTGGACATTCTCGAGTTTCGAATGTCGTATGACTGTAATTTTAATTCATGAAATAATGATTACATTAATTAGTGGTACCGTAATTTCACACCCATCATGGTTAAACCCGTTGGAGCAGGAGAATAGTCGGTTAACGCCATCAAACTCGCAGTACATTTGGATGTGACGTTTTCGTGGGAATTCCATGACAACTGCCAGAGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCTGAAAATCCTGAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>TCTTCAAGTCTGCACATATCC</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>AATCTGAAAATCCTGAAAACAGCCCGGCCCGGCCCGTTTCAAGTATGCTTAAAACCTGTAATAGAAGCCCCCCATTGTCAGGTTTGAGGCAATTTATCTAGGTTCCTGTAAAAGATATGAAAAAGTTGTCAACTGATAAAATGTTTATCATATAATCACCTAAGTTTCATCAATGAACACATTTTTGATAGCTTTCATAGGAATTCAGATAAATTGGTTGAAAGTTAAAATACTCACTGTCCGTCCGGATATGTGCAGACTTGAAGA</canonical_amplicon>
		<polymorphic_amplicon>AATCTGAAAATCCTGAAAACAGCCCGGCCCGGCCCGTTTCAAGTATGCTTAAAACCTGTAATAGAAGCCCCCCATTGTCAGGTTTGAGGCAATTTATCTAGGTTCCTGTAAAAGATATGAAAAAGTTGTCAACTGATAAAATGTTTATCATATAATCACCTAAGTTTCATCAATGAACACATTTTTGATAGCTTTYATAGGAATTCAGATAAATTGGTTGAAAGTTAAAATACTCACTGTCCGTCCGGATATGTGCAGACTTGAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27489</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>343452</contig_pos>
        <strand></strand>
        <context>ttyataggaa[T/C]tcagataaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATCACCTAAGTTTCATCAATGAACACATTTTTGATAGCTTTCATAGGAA</left_flank>
        <right_flank>TCAGATAAATTGGTTGAAAGTTAAAATACTCACTGTCCGTCCGGATATGT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATGATTCTTTGTGCAGCCATTTTTGCTTGGTAATGGATCAGACGGCCCTTTCCGCCGGACACAATTATACTGAAAATTAAAAATGTGTACTTAAAACCATACTTGCAAAATCAGGGCCCGGCCCGGGTTTTCCAAATTTGAAATTTTTTTTTTGAAATTTCAGAAATTTTTTCAAATTTTTTTGTAGAAGAACTATTTTTTATGCGCACTCTTATCTTGAAAATTTTTTTTCTTGTCCATTTTTTTCTGTTAACCCCAAAAAATTTTTTGAAATACAGAAAAAATTTTTCCAAAAATCTGAAAATCCTGAAAACAGCCCGGCCCGGCCCGTTTCAAGTATGCTTAAAACCTGTAATAGAAGCCCCCCATTGTCAGGTTTGAGGCAATTTATCTAGGTTCCTGTAAAAGATATGAAAAAGTTGTCAACTGATAAAATGTTTATCATATAATCACCTAAGTTTCATCAATGAACACATTTTTGATAGCTTTCATAGGAATTCAGATAAATTGGTTGAAAGTTAAAATACTCACTGTCCGTCCGGATATGTGCAGACTTGAAGATTGTCAGCTTCCAGTGGCACGTCCTCGTTCCAAAAGGGTTTTAGGACTATAAATCAAAATTTTCAGAATATTTTAGAATCTTCTAGACTTACCATTGATCCCATCTTCCTCGATTTTCCAAAGCCTTATCTGTTTATCCGCTGAAACTGATACCAGCAATCGTTTGGCTCCATCCAGTTGCACCAATGACAAAGAAGTCACATTGCCTTCATGACCGCGAACCTCTTTGGACATTCTCGAGTTTCGAATGTCGTATGACTGTAATTTTAATTCATGAAATAATGATTACATTAATTAGTGGTACCGTAATTTCACACCCATCATGGTTAAACCCGTTGGAGCAGGAGAATAGTCGGTTAACGCCATCAAACTCGCAGTACATTTGGATGTGACGTTTTCGTGGGAATTCCATGACAACTGCCAGAGAGCGTGGGTCC</canonical>
            <polymorphic>AAATGATTCTTTGTGCAGCCATTTTTGCTTGGTAATGGATCAGACGGCCCTTTCCGCCGGACACAATTATACTGAAAATTAAAAATGTGTACTTAAAACCATACTTGCAAAATCAGGGCCCGGCCCGGGTTTTCCAAATTTGAAATTTTTTTTTTGAAATTTCAGAAATTTTTTCAAATTTTTTTGTAGAAGAACTATTTTTTATGCGCACTCTTATCTTGAAAATTTTTTTTCTTGTCCATTTTTTTCTGTTAACCCCAAAAAATTTTTTGAAATACAGAAAAAATTTTTCCAAAAATCTGAAAATCCTGAAAACAGCCCGGCCCGGCCCGTTTCAAGTATGCTTAAAACCTGTAATAGAAGCCCCCCATTGTCAGGTTTGAGGCAATTTATCTAGGTTCCTGTAAAAGATATGAAAAAGTTGTCAACTGATAAAATGTTTATCATATAATCACCTAAGTTTCATCAATGAACACATTTTTGATAGCTTTCATAGGAAYTCAGATAAATTGGTTGAAAGTTAAAATACTCACTGTCCGTCCGGATATGTGCAGACTTGAAGATTGTCAGCTTCCAGTGGCACGTCCTCGTTCCAAAAGGGTTTTAGGACTATAAATCAAAATTTTCAGAATATTTTAGAATCTTCTAGACTTACCATTGATCCCATCTTCCTCGATTTTCCAAAGCCTTATCTGTTTATCCGCTGAAACTGATACCAGCAATCGTTTGGCTCCATCCAGTTGCACCAATGACAAAGAAGTCACATTGCCTTCATGACCGCGAACCTCTTTGGACATTCTCGAGTTTCGAATGTCGTATGACTGTAATTTTAATTCATGAAATAATGATTACATTAATTAGTGGTACCGTAATTTCACACCCATCATGGTTAAACCCGTTGGAGCAGGAGAATAGTCGGTTAACGCCATCAAACTCGCAGTACATTTGGATGTGACGTTTTCGTGGGAATTCCATGACAACTGCCAGAGAGCGTGGGTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>347 213 136 123 47 40 33 21 14 10 9 7</canonical_bands>
                <polymorphic_bands>347 336 136 47 40 33 21 14 10 9 7</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>497 470 33</canonical_bands>
                <polymorphic_bands>967 33</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>205 113 111 102 97 64 60 47 40 33 24 21 15 14 12 10 10 9 7 6</canonical_bands>
                <polymorphic_bands>205 121 113 102 97 64 60 47 40 33 24 21 15 14 12 10 9 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCTGAAAATCCTGAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>TCTTCAAGTCTGCACATATCC</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>AATCTGAAAATCCTGAAAACAGCCCGGCCCGGCCCGTTTCAAGTATGCTTAAAACCTGTAATAGAAGCCCCCCATTGTCAGGTTTGAGGCAATTTATCTAGGTTCCTGTAAAAGATATGAAAAAGTTGTCAACTGATAAAATGTTTATCATATAATCACCTAAGTTTCATCAATGAACACATTTTTGATAGCTTTCATAGGAATTCAGATAAATTGGTTGAAAGTTAAAATACTCACTGTCCGTCCGGATATGTGCAGACTTGAAGA</canonical_amplicon>
		<polymorphic_amplicon>AATCTGAAAATCCTGAAAACAGCCCGGCCCGGCCCGTTTCAAGTATGCTTAAAACCTGTAATAGAAGCCCCCCATTGTCAGGTTTGAGGCAATTTATCTAGGTTCCTGTAAAAGATATGAAAAAGTTGTCAACTGATAAAATGTTTATCATATAATCACCTAAGTTTCATCAATGAACACATTTTTGATAGCTTTCATAGGAAYTCAGATAAATTGGTTGAAAGTTAAAATACTCACTGTCCGTCCGGATATGTGCAGACTTGAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27490</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>343491</contig_pos>
        <strand>+</strand>
        <context>CTCACTGTCC[A/G]TCCGGATATG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCATAGGAATTCAGATAAATTGGTTGAAAGTTAAAATACTCACTGTCC</left_flank>
        <right_flank>TCCGGATATGTGCAGACTTGAAGATTGTCAGCTTCCAGTGGCACGTCCTC</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGACGGCCCTTTCCGCCGGACACAATTATACTGAAAATTAAAAATGTGTACTTAAAACCATACTTGCAAAATCAGGGCCCGGCCCGGGTTTTCCAAATTTGAAATTTTTTTTTTGAAATTTCAGAAATTTTTTCAAATTTTTTTGTAGAAGAACTATTTTTTATGCGCACTCTTATCTTGAAAATTTTTTTTCTTGTCCATTTTTTTCTGTTAACCCCAAAAAATTTTTTGAAATACAGAAAAAATTTTTCCAAAAATCTGAAAATCCTGAAAACAGCCCGGCCCGGCCCGTTTCAAGTATGCTTAAAACCTGTAATAGAAGCCCCCCATTGTCAGGTTTGAGGCAATTTATCTAGGTTCCTGTAAAAGATATGAAAAAGTTGTCAACTGATAAAATGTTTATCATATAATCACCTAAGTTTCATCAATGAACACATTTTTGATAGCTTTCATAGGAATTCAGATAAATTGGTTGAAAGTTAAAATACTCACTGTCCGTCCGGATATGTGCAGACTTGAAGATTGTCAGCTTCCAGTGGCACGTCCTCGTTCCAAAAGGGTTTTAGGACTATAAATCAAAATTTTCAGAATATTTTAGAATCTTCTAGACTTACCATTGATCCCATCTTCCTCGATTTTCCAAAGCCTTATCTGTTTATCCGCTGAAACTGATACCAGCAATCGTTTGGCTCCATCCAGTTGCACCAATGACAAAGAAGTCACATTGCCTTCATGACCGCGAACCTCTTTGGACATTCTCGAGTTTCGAATGTCGTATGACTGTAATTTTAATTCATGAAATAATGATTACATTAATTAGTGGTACCGTAATTTCACACCCATCATGGTTAAACCCGTTGGAGCAGGAGAATAGTCGGTTAACGCCATCAAACTCGCAGTACATTTGGATGTGACGTTTTCGTGGGAATTCCATGACAACTGCCAGAGAGCGTGGGTCCCAGAGTCTGAAAAATAAAAAATTGGCAAAATTGAGCACT</canonical>
            <polymorphic>TCAGACGGCCCTTTCCGCCGGACACAATTATACTGAAAATTAAAAATGTGTACTTAAAACCATACTTGCAAAATCAGGGCCCGGCCCGGGTTTTCCAAATTTGAAATTTTTTTTTTGAAATTTCAGAAATTTTTTCAAATTTTTTTGTAGAAGAACTATTTTTTATGCGCACTCTTATCTTGAAAATTTTTTTTCTTGTCCATTTTTTTCTGTTAACCCCAAAAAATTTTTTGAAATACAGAAAAAATTTTTCCAAAAATCTGAAAATCCTGAAAACAGCCCGGCCCGGCCCGTTTCAAGTATGCTTAAAACCTGTAATAGAAGCCCCCCATTGTCAGGTTTGAGGCAATTTATCTAGGTTCCTGTAAAAGATATGAAAAAGTTGTCAACTGATAAAATGTTTATCATATAATCACCTAAGTTTCATCAATGAACACATTTTTGATAGCTTTCATAGGAATTCAGATAAATTGGTTGAAAGTTAAAATACTCACTGTCCRTCCGGATATGTGCAGACTTGAAGATTGTCAGCTTCCAGTGGCACGTCCTCGTTCCAAAAGGGTTTTAGGACTATAAATCAAAATTTTCAGAATATTTTAGAATCTTCTAGACTTACCATTGATCCCATCTTCCTCGATTTTCCAAAGCCTTATCTGTTTATCCGCTGAAACTGATACCAGCAATCGTTTGGCTCCATCCAGTTGCACCAATGACAAAGAAGTCACATTGCCTTCATGACCGCGAACCTCTTTGGACATTCTCGAGTTTCGAATGTCGTATGACTGTAATTTTAATTCATGAAATAATGATTACATTAATTAGTGGTACCGTAATTTCACACCCATCATGGTTAAACCCGTTGGAGCAGGAGAATAGTCGGTTAACGCCATCAAACTCGCAGTACATTTGGATGTGACGTTTTCGTGGGAATTCCATGACAACTGCCAGAGAGCGTGGGTCCCAGAGTCTGAAAAATAAAAAATTGGCAAAATTGAGCACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCTGAAAATCCTGAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>TCCTAAAACCCTTTTGGAAC</pcr_primer_p2>
		<pcr_amplicon_size>313</pcr_amplicon_size>
		<canonical_amplicon>AATCTGAAAATCCTGAAAACAGCCCGGCCCGGCCCGTTTCAAGTATGCTTAAAACCTGTAATAGAAGCCCCCCATTGTCAGGTTTGAGGCAATTTATCTAGGTTCCTGTAAAAGATATGAAAAAGTTGTCAACTGATAAAATGTTTATCATATAATCACCTAAGTTTCATCAATGAACACATTTTTGATAGCTTTCATAGGAATTCAGATAAATTGGTTGAAAGTTAAAATACTCACTGTCCGTCCGGATATGTGCAGACTTGAAGATTGTCAGCTTCCAGTGGCACGTCCTCGTTCCAAAAGGGTTTTAGGA</canonical_amplicon>
		<polymorphic_amplicon>AATCTGAAAATCCTGAAAACAGCCCGGCCCGGCCCGTTTCAAGTATGCTTAAAACCTGTAATAGAAGCCCCCCATTGTCAGGTTTGAGGCAATTTATCTAGGTTCCTGTAAAAGATATGAAAAAGTTGTCAACTGATAAAATGTTTATCATATAATCACCTAAGTTTCATCAATGAACACATTTTTGATAGCTTTCATAGGAATTCAGATAAATTGGTTGAAAGTTAAAATACTCACTGTCCRTCCGGATATGTGCAGACTTGAAGATTGTCAGCTTCCAGTGGCACGTCCTCGTTCCAAAAGGGTTTTAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27491</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>385001</contig_pos>
        <strand>+</strand>
        <context>CAAGTTTATT[A/T]YCACAGGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGTGGATTGATATAAGAGAAATACGATGTTTTCAACCAACAAGTTTATT</left_flank>
        <right_flank>TCACAGGAAACAATTTCAGAATGCAAAGAATTATCACATTGTCATTGTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGCGGATATTTTTTTATCATCTTCGTGAAAGAAATAGCGGATTTCCGGAGGACCACACTATCAGACAGGGTAGAGACGAGAAGAAATATCAGGATTGGAAGGAGCAACATTTTCGAAACTGGGTAAAAAAAGAATATGGCTCTGCCTAGGATGAATAAAACTTGAGACAAGAGTCAAGCTCAAGTGGTCTGGATAATAAAAAAAGGATACTTTTTTTCTTGAGTGGAGATCAAACTACAAACGAAATATGAATTTTAGTTTAGTCGCAGATTTTAAATTTTCTAGGTACCCATACTTACCGTAAGCGCTCTCTAACTTTGAGCACATGTATCTCATTTCCTGTGAAAAATTCCGGAAAGAGGTCAATTAGCAAAATGTTCATCATAATATCACAAATATTTTATTAGTGGACAAATTTTTGATTAGGAACCGAGATAATTGAAATCAAAGTGGATTGATATAAGAGAAATACGATGTTTTCAACCAACAAGTTTATTTTCACAGGAAACAATTTCAGAATGCAAAGAATTATCACATTGTCATTGTCCATCCATTGTCGGTTTTCTCCCATTTTATTATCTTGCTGGAAACGTAACCGTAGTTACCAGACCTGGTAACAATAGAACCGATGTAATCTTTGTACGTCAGTGCGCAATCAAAATCGTCCAAATCCACCTGAAAATTTGAGTTAAAACCTTTAATAAAAGGGACCCACACTGTTAACGTTTTATCTCGATTCTTATGCAAGATATCAAAAATTCATCAACTGACAAAGCATTTCTTTATGAATGACGATTCATCAGTGGACAACGTTTTTGTATCTTTGACAGGAACCGGGATAATTGAGCTATTAGAATACGGTACTTATTTCCAATTCCCTCACCTTAAACCCAACGACTTCTCCATCCTTATCAGTAGTCTCTTCAATAATAATAGTTGTTCCTTCCGTATAATCATAGAATCTGCATGTTCGTCTTGTGTCCATATCAGCAAGAAGC</canonical>
            <polymorphic>TTGGCGGATATTTTTTTATCATCTTCGTGAAAGAAATAGCGGATTTCCGGAGGACCACACTATCAGACAGGGTAGAGACGAGAAGAAATATCAGGATTGGAAGGAGCAACATTTTCGAAACTGGGTAAAAAAAGAATATGGCTCTGCCTAGGATGAATAAAACTTGAGACAAGAGTCAAGCTCAAGTGGTCTGGATAATAAAAAAAGGATACTTTTTTTCTTGAGTGGAGATCAAACTACAAACGAAATATGAATTTTAGTTTAGTCGCAGATTTTAAATTTTCTAGGTACCCATACTTACCGTAAGCGCTCTCTAACTTTGAGCACATGTATCTCATTTCCTGTGAAAAATTCCGGAAAGAGGTCAATTAGCAAAATGTTCATCATAATATCACAAATATTTTATTAGTGGACAAATTTTTGATTAGGAACCGAGATAATTGAAATCAAAGTGGATTGATATAAGAGAAATACGATGTTTTCAACCAACAAGTTTATTWTCACAGGAAACAATTTCAGAATGCAAAGAATTATCACATTGTCATTGTCCATCCATTGTCGGTTTTCTCCCATTTTATTATCTTGCTGGAAACGTAACCGTAGTTACCAGACCTGGTAACAATAGAACCGATGTAATCTTTGTACGTCAGTGCGCAATCAAAATCGTCCAAATCCACCTGAAAATTTGAGTTAAAACCTTTAATAAAAGGGACCCACACTGTTAACGTTTTATCTCGATTCTTATGCAAGATATCAAAAATTCATCAACTGACAAAGCATTTCTTTATGAATGACGATTCATCAGTGGACAACGTTTTTGTATCTTTGACAGGAACCGGGATAATTGAGCTATTAGAATACGGTACTTATTTCCAATTCCCTCACCTTAAACCCAACGACTTCTCCATCCTTATCAGTAGTCTCTTCAATAATAATAGTTGTTCCTTCCGTATAATCATAGAATCTGCATGTTCGTCTTGTGTCCATATCAGCAAGAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAAATTTTCTAGGTACCCATACTT</pcr_primer_p1>
		<pcr_primer_p2>GACAATGGATGGACAATGAC</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>TTTAAATTTTCTAGGTACCCATACTTACCGTAAGCGCTCTCTAACTTTGAGCACATGTATCTCATTTCCTGTGAAAAATTCCGGAAAGAGGTCAATTAGCAAAATGTTCATCATAATATCACAAATATTTTATTAGTGGACAAATTTTTGATTAGGAACCGAGATAATTGAAATCAAAGTGGATTGATATAAGAGAAATACGATGTTTTCAACCAACAAGTTTATTTTCACAGGAAACAATTTCAGAATGCAAAGAATTATCACATTGTCATTGTCCATCCATTGTC</canonical_amplicon>
		<polymorphic_amplicon>TTTAAATTTTCTAGGTACCCATACTTACCGTAAGCGCTCTCTAACTTTGAGCACATGTATCTCATTTCCTGTGAAAAATTCCGGAAAGAGGTCAATTAGCAAAATGTTCATCATAATATCACAAATATTTTATTAGTGGACAAATTTTTGATTAGGAACCGAGATAATTGAAATCAAAGTGGATTGATATAAGAGAAATACGATGTTTTCAACCAACAAGTTTATTWTCACAGGAAACAATTTCAGAATGCAAAGAATTATCACATTGTCATTGTCCATCCATTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27492</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>385002</contig_pos>
        <strand>+</strand>
        <context>AAGTTTATTW[C/T]CACAGGAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTGGATTGATATAAGAGAAATACGATGTTTTCAACCAACAAGTTTATTT</left_flank>
        <right_flank>CACAGGAAACAATTTCAGAATGCAAAGAATTATCACATTGTCATTGTCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCGGATATTTTTTTATCATCTTCGTGAAAGAAATAGCGGATTTCCGGAGGACCACACTATCAGACAGGGTAGAGACGAGAAGAAATATCAGGATTGGAAGGAGCAACATTTTCGAAACTGGGTAAAAAAAGAATATGGCTCTGCCTAGGATGAATAAAACTTGAGACAAGAGTCAAGCTCAAGTGGTCTGGATAATAAAAAAAGGATACTTTTTTTCTTGAGTGGAGATCAAACTACAAACGAAATATGAATTTTAGTTTAGTCGCAGATTTTAAATTTTCTAGGTACCCATACTTACCGTAAGCGCTCTCTAACTTTGAGCACATGTATCTCATTTCCTGTGAAAAATTCCGGAAAGAGGTCAATTAGCAAAATGTTCATCATAATATCACAAATATTTTATTAGTGGACAAATTTTTGATTAGGAACCGAGATAATTGAAATCAAAGTGGATTGATATAAGAGAAATACGATGTTTTCAACCAACAAGTTTATTTTCACAGGAAACAATTTCAGAATGCAAAGAATTATCACATTGTCATTGTCCATCCATTGTCGGTTTTCTCCCATTTTATTATCTTGCTGGAAACGTAACCGTAGTTACCAGACCTGGTAACAATAGAACCGATGTAATCTTTGTACGTCAGTGCGCAATCAAAATCGTCCAAATCCACCTGAAAATTTGAGTTAAAACCTTTAATAAAAGGGACCCACACTGTTAACGTTTTATCTCGATTCTTATGCAAGATATCAAAAATTCATCAACTGACAAAGCATTTCTTTATGAATGACGATTCATCAGTGGACAACGTTTTTGTATCTTTGACAGGAACCGGGATAATTGAGCTATTAGAATACGGTACTTATTTCCAATTCCCTCACCTTAAACCCAACGACTTCTCCATCCTTATCAGTAGTCTCTTCAATAATAATAGTTGTTCCTTCCGTATAATCATAGAATCTGCATGTTCGTCTTGTGTCCATATCAGCAAGAAGCG</canonical>
            <polymorphic>TGGCGGATATTTTTTTATCATCTTCGTGAAAGAAATAGCGGATTTCCGGAGGACCACACTATCAGACAGGGTAGAGACGAGAAGAAATATCAGGATTGGAAGGAGCAACATTTTCGAAACTGGGTAAAAAAAGAATATGGCTCTGCCTAGGATGAATAAAACTTGAGACAAGAGTCAAGCTCAAGTGGTCTGGATAATAAAAAAAGGATACTTTTTTTCTTGAGTGGAGATCAAACTACAAACGAAATATGAATTTTAGTTTAGTCGCAGATTTTAAATTTTCTAGGTACCCATACTTACCGTAAGCGCTCTCTAACTTTGAGCACATGTATCTCATTTCCTGTGAAAAATTCCGGAAAGAGGTCAATTAGCAAAATGTTCATCATAATATCACAAATATTTTATTAGTGGACAAATTTTTGATTAGGAACCGAGATAATTGAAATCAAAGTGGATTGATATAAGAGAAATACGATGTTTTCAACCAACAAGTTTATTTYCACAGGAAACAATTTCAGAATGCAAAGAATTATCACATTGTCATTGTCCATCCATTGTCGGTTTTCTCCCATTTTATTATCTTGCTGGAAACGTAACCGTAGTTACCAGACCTGGTAACAATAGAACCGATGTAATCTTTGTACGTCAGTGCGCAATCAAAATCGTCCAAATCCACCTGAAAATTTGAGTTAAAACCTTTAATAAAAGGGACCCACACTGTTAACGTTTTATCTCGATTCTTATGCAAGATATCAAAAATTCATCAACTGACAAAGCATTTCTTTATGAATGACGATTCATCAGTGGACAACGTTTTTGTATCTTTGACAGGAACCGGGATAATTGAGCTATTAGAATACGGTACTTATTTCCAATTCCCTCACCTTAAACCCAACGACTTCTCCATCCTTATCAGTAGTCTCTTCAATAATAATAGTTGTTCCTTCCGTATAATCATAGAATCTGCATGTTCGTCTTGTGTCCATATCAGCAAGAAGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAAATTTTCTAGGTACCCATACTT</pcr_primer_p1>
		<pcr_primer_p2>GACAATGGATGGACAATGAC</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>TTTAAATTTTCTAGGTACCCATACTTACCGTAAGCGCTCTCTAACTTTGAGCACATGTATCTCATTTCCTGTGAAAAATTCCGGAAAGAGGTCAATTAGCAAAATGTTCATCATAATATCACAAATATTTTATTAGTGGACAAATTTTTGATTAGGAACCGAGATAATTGAAATCAAAGTGGATTGATATAAGAGAAATACGATGTTTTCAACCAACAAGTTTATTTTCACAGGAAACAATTTCAGAATGCAAAGAATTATCACATTGTCATTGTCCATCCATTGTC</canonical_amplicon>
		<polymorphic_amplicon>TTTAAATTTTCTAGGTACCCATACTTACCGTAAGCGCTCTCTAACTTTGAGCACATGTATCTCATTTCCTGTGAAAAATTCCGGAAAGAGGTCAATTAGCAAAATGTTCATCATAATATCACAAATATTTTATTAGTGGACAAATTTTTGATTAGGAACCGAGATAATTGAAATCAAAGTGGATTGATATAAGAGAAATACGATGTTTTCAACCAACAAGTTTATTTYCACAGGAAACAATTTCAGAATGCAAAGAATTATCACATTGTCATTGTCCATCCATTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27493</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>446487</contig_pos>
        <strand></strand>
        <context>cagttgacaa[T/C]tttttgatat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AACTAATACAATATTGCTGATATTATGATTAACAATTTAGCAGTTGACAA</left_flank>
        <right_flank>TTTTTGATATCTTTCATAGGAGTTGAGATAATTGAGCTCAAACTTGACAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGCGTTACCGTCTCCGCATACACGACACGTGTCACTGGAACCTGGAAATTTGTATTTTTTGTGTTGTGAATGGAACGTATTTGTTTTGAAAAATACAGCAAAATTCGAGATTGTCCAAATTCGGTGGTCCTTAAATGTAGCTAGAACTTACCGCAAAACCTTTAATAGAAGGACCTTTCAACTTTTCGAGCTTTTAAACTTCGAGCCATTTTATCTCGGTTCCTATGAAACATACAAAAAAGTTATCAATTAATAAAGTGTTTATCATAATATCAGAAACATTTTATTAGTTAACAACTTTCTGATATCTTTCACAGAAACCGAGATAAATTGTTTCAAACCCGCCGTGCCGCTGAGCTACGATTGCGCCAGCTGAGGCGGCCCCCTGAAACTGTCAAATTTGAGCCCAATTATCTCGGTTTTTGTGGAAGATATGAGAAAATTGTCAACTAATACAATATTGCTGATATTATGATTAACAATTTAGCAGTTGACAATTTTTTGATATCTTTCATAGGAGTTGAGATAATTGAGCTCAAACTTGACAGTGCTCATTCAGACAAATTTAGCTTATTGTAGACGTTTTGAAAATCTTCGAAACTTGGAAAAACAAGCGTTGCATTCGCGTTCATTGAAAAAAAAACTATCTTCCTTATTAATAAAACGCTAGAGGCGTCTGTTCGTCCAAATAGAGACGAACATTTGAAAAAATAGGGTGAATCGCGCCGAAGGCGCACCAGCTGGTTTAAAATACAAAATTTTGAATTTCAGTAGAGCGAATTTGCCCACGACTCACCAGAATGTGTTGCTATCTGACTTAACGACGATTTTCGGGAAATCGATGCAGCCATATTTTCCAAACTCGATGTGTCAACTTTTCCCATTTTTAATCTGCAATTTTAAACAATTTTAATAATTCATTTTTTTCTCCAGACTACGATAATCTGGACACATACACACAGGTCGTATCGGAATGCAGGATAAAGATGTCAAAAGGA</canonical>
            <polymorphic>TTTGCGTTACCGTCTCCGCATACACGACACGTGTCACTGGAACCTGGAAATTTGTATTTTTTGTGTTGTGAATGGAACGTATTTGTTTTGAAAAATACAGCAAAATTCGAGATTGTCCAAATTCGGTGGTCCTTAAATGTAGCTAGAACTTACCGCAAAACCTTTAATAGAAGGACCTTTCAACTTTTCGAGCTTTTAAACTTCGAGCCATTTTATCTCGGTTCCTATGAAACATACAAAAAAGTTATCAATTAATAAAGTGTTTATCATAATATCAGAAACATTTTATTAGTTAACAACTTTCTGATATCTTTCACAGAAACCGAGATAAATTGTTTCAAACCCGCCGTGCCGCTGAGCTACGATTGCGCCAGCTGAGGCGGCCCCCTGAAACTGTCAAATTTGAGCCCAATTATCTCGGTTTTTGTGGAAGATATGAGAAAATTGTCAACTAATACAATATTGCTGATATTATGATTAACAATTTAGCAGTTGACAAYTTTTTGATATCTTTCATAGGAGTTGAGATAATTGAGCTCAAACTTGACAGTGCTCATTCAGACAAATTTAGCTTATTGTAGACGTTTTGAAAATCTTCGAAACTTGGAAAAACAAGCGTTGCATTCGCGTTCATTGAAAAAAAAACTATCTTCCTTATTAATAAAACGCTAGAGGCGTCTGTTCGTCCAAATAGAGACGAACATTTGAAAAAATAGGGTGAATCGCGCCGAAGGCGCACCAGCTGGTTTAAAATACAAAATTTTGAATTTCAGTAGAGCGAATTTGCCCACGACTCACCAGAATGTGTTGCTATCTGACTTAACGACGATTTTCGGGAAATCGATGCAGCCATATTTTCCAAACTCGATGTGTCAACTTTTCCCATTTTTAATCTGCAATTTTAAACAATTTTAATAATTCATTTTTTTCTCCAGACTACGATAATCTGGACACATACACACAGGTCGTATCGGAATGCAGGATAAAGATGTCAAAAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>194 130 117 84 81 69 55 48 40 35 32 32 16 15 15 11 10 9 7</canonical_bands>
                <polymorphic_bands>194 130 117 84 81 69 55 48 47 40 35 32 16 15 11 10 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGTCCTTAAATGTAGCTAGAAC</pcr_primer_p1>
		<pcr_primer_p2>AATAAGCTAAATTTGTCTGAATGA</pcr_primer_p2>
		<pcr_amplicon_size>451</pcr_amplicon_size>
		<canonical_amplicon>TGGTCCTTAAATGTAGCTAGAACTTACCGCAAAACCTTTAATAGAAGGACCTTTCAACTTTTCGAGCTTTTAAACTTCGAGCCATTTTATCTCGGTTCCTATGAAACATACAAAAAAGTTATCAATTAATAAAGTGTTTATCATAATATCAGAAACATTTTATTAGTTAACAACTTTCTGATATCTTTCACAGAAACCGAGATAAATTGTTTCAAACCCGCCGTGCCGCTGAGCTACGATTGCGCCAGCTGAGGCGGCCCCCTGAAACTGTCAAATTTGAGCCCAATTATCTCGGTTTTTGTGGAAGATATGAGAAAATTGTCAACTAATACAATATTGCTGATATTATGATTAACAATTTAGCAGTTGACAATTTTTTGATATCTTTCATAGGAGTTGAGATAATTGAGCTCAAACTTGACAGTGCTCATTCAGACAAATTTAGCTTATT</canonical_amplicon>
		<polymorphic_amplicon>TGGTCCTTAAATGTAGCTAGAACTTACCGCAAAACCTTTAATAGAAGGACCTTTCAACTTTTCGAGCTTTTAAACTTCGAGCCATTTTATCTCGGTTCCTATGAAACATACAAAAAAGTTATCAATTAATAAAGTGTTTATCATAATATCAGAAACATTTTATTAGTTAACAACTTTCTGATATCTTTCACAGAAACCGAGATAAATTGTTTCAAACCCGCCGTGCCGCTGAGCTACGATTGCGCCAGCTGAGGCGGCCCCCTGAAACTGTCAAATTTGAGCCCAATTATCTCGGTTTTTGTGGAAGATATGAGAAAATTGTCAACTAATACAATATTGCTGATATTATGATTAACAATTTAGCAGTTGACAAYTTTTTGATATCTTTCATAGGAGTTGAGATAATTGAGCTCAAACTTGACAGTGCTCATTCAGACAAATTTAGCTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27494</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>546711</contig_pos>
        <strand>+</strand>
        <context>TGATATTGAA[C/T]GCCTTCGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCGCTTCTTCTGGGAACATCGTACAGAACACTTTGTCTTTGATATTGAA</left_flank>
        <right_flank>GCCTTCGATTTTTTAGCCAGAAGACGTCGCTCGGATTCCGACGAATTCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGACAGTTTTAGTACCAAATGATAGATCTCGACAGGGCCCATCACGTCTATATCATACGAGCCGGATTCCGGTCCGATAACATGTCGAAAAATGTGTTTGAATGACAATTTTCGACCAATTTGAAAGCAGAATTTTTGTCATTCAAACATATTTCGACTCGAATGATATAAACGTGATAGGCCCTGTTGAGATCTATCATTTGGTACCAAAATTGTCTGCATATCTCGTTCTAGGGAAAATTTGACAGCAGGCCCGCTTGCAGCTATGTTCAAAACTGTGCTAACAACAAAATTGTGCTGTAAGACATCCGAAATTCTTCTCATGAAAACAAGGGATAGTTTAGCACAAATTTGACAAAACCCTTACCGATTTCGAATCGCCGTTTCCTCGTCCTTGATACTATCCAGCTCTTCCTGATTCATTTTCTGAATATCGTCTCGAATCTCTTGCGCTTCTTCTGGGAACATCGTACAGAACACTTTGTCTTTGATATTGAATGCCTTCGATTTTTTAGCCAGAAGACGTCGCTCGGATTCCGACGAATTCAGACTTCCCAGCGTCGGCTGATTATCGTTCATAAACGACATCAATCCAGTGATAATTGTGGACACCGTCCATGCTGGATTCCACGTATCCGGGTGGTAGTCAGAGATTGAGAGACACAGACGGGTGTTGACCTGGAATTATGGAACATTTCTAGTGGAACTAGGCTACTATAGTTTTCCTGTTGGGACCTAGTAATTAAGAATTTTGAGTTTTTTCAAAGATTTCGAAAATCTACAGTAACCCTGGGTTACTGTAATCACCTGAAATCTGCCACTCGGTGTCAACATGAGAATCGCTGGTGGTTTGAATGGGAAATCCTTTGGGAAGAGAAGTTTTCCATGGTAAATCCCACCCTCGTACGGAGTCTTTGGCGCTCCAATGATAATGTATCTCCATTCGAGAATGTTCGATTCCAGCGGCGCCGCTTTCATGTATGGAACTGGTTCTCTGGA</canonical>
            <polymorphic>CAGACAGTTTTAGTACCAAATGATAGATCTCGACAGGGCCCATCACGTCTATATCATACGAGCCGGATTCCGGTCCGATAACATGTCGAAAAATGTGTTTGAATGACAATTTTCGACCAATTTGAAAGCAGAATTTTTGTCATTCAAACATATTTCGACTCGAATGATATAAACGTGATAGGCCCTGTTGAGATCTATCATTTGGTACCAAAATTGTCTGCATATCTCGTTCTAGGGAAAATTTGACAGCAGGCCCGCTTGCAGCTATGTTCAAAACTGTGCTAACAACAAAATTGTGCTGTAAGACATCCGAAATTCTTCTCATGAAAACAAGGGATAGTTTAGCACAAATTTGACAAAACCCTTACCGATTTCGAATCGCCGTTTCCTCGTCCTTGATACTATCCAGCTCTTCCTGATTCATTTTCTGAATATCGTCTCGAATCTCTTGCGCTTCTTCTGGGAACATCGTACAGAACACTTTGTCTTTGATATTGAAYGCCTTCGATTTTTTAGCCAGAAGACGTCGCTCGGATTCCGACGAATTCAGACTTCCCAGCGTCGGCTGATTATCGTTCATAAACGACATCAATCCAGTGATAATTGTGGACACCGTCCATGCTGGATTCCACGTATCCGGGTGGTAGTCAGAGATTGAGAGACACAGACGGGTGTTGACCTGGAATTATGGAACATTTCTAGTGGAACTAGGCTACTATAGTTTTCCTGTTGGGACCTAGTAATTAAGAATTTTGAGTTTTTTCAAAGATTTCGAAAATCTACAGTAACCCTGGGTTACTGTAATCACCTGAAATCTGCCACTCGGTGTCAACATGAGAATCGCTGGTGGTTTGAATGGGAAATCCTTTGGGAAGAGAAGTTTTCCATGGTAAATCCCACCCTCGTACGGAGTCTTTGGCGCTCCAATGATAATGTATCTCCATTCGAGAATGTTCGATTCCAGCGGCGCCGCTTTCATGTATGGAACTGGTTCTCTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGATTCATTTTCTGAATATCGT</pcr_primer_p1>
		<pcr_primer_p2>GTGTCTCTCAATCTCTGACTACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGATTCATTTTCTGAATATCGTCTCGAATCTCTTGCGCTTCTTCTGGGAACATCGTACAGAACACTTTGTCTTTGATATTGAATGCCTTCGATTTTTTAGCCAGAAGACGTCGCTCGGATTCCGACGAATTCAGACTTCCCAGCGTCGGCTGATTATCGTTCATAAACGACATCAATCCAGTGATAATTGTGGACACCGTCCATGCTGGATTCCACGTATCCGGGTGGTAGTCAGAGATTGAGAGACAC</canonical_amplicon>
		<polymorphic_amplicon>CTGATTCATTTTCTGAATATCGTCTCGAATCTCTTGCGCTTCTTCTGGGAACATCGTACAGAACACTTTGTCTTTGATATTGAAYGCCTTCGATTTTTTAGCCAGAAGACGTCGCTCGGATTCCGACGAATTCAGACTTCCCAGCGTCGGCTGATTATCGTTCATAAACGACATCAATCCAGTGATAATTGTGGACACCGTCCATGCTGGATTCCACGTATCCGGGTGGTAGTCAGAGATTGAGAGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27495</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>551683</contig_pos>
        <strand>+</strand>
        <context>TTTTCTAATA[A/G]AGAAATWTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATA</left_flank>
        <right_flank>AGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCCAGGATTCCACGATTCCGGATGATAATCAGAAATCGAGAGGCACAAACGCGTGTTCGTCGCGAAACGTCCGTTCGGAGTGATCATTGTGATAGCTGGTGGACTCCACGGAAAGTTCTCCTTGAAGATCACTTTTCCCCAATAGAATCCTCCCTGGAACGGAGTGTCTGGACTTCCACGAAGACAATAGTGCCACTCGAGAATGTTCTCCTCGTTGGGCAACGCTTTGATTCCATCCACTGGGTCCTGCATGAGCTTCGCAAAGTCCTTCTGGAGACGACGGATCGCTGTGGCCGACGCGGAGCCAGCTGGTGGAACGGCGACACCGGGACCCTTAAGCTTAAGATTATTAGACGGGATTTTAACTTTTTGGACATTTTTAGGCTCAAAAATCTATTCATTTTGTGCTGAAAGTCATGGAAATTCACCAAAAAATCGAACCTGAGTTTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAA</canonical>
            <polymorphic>CATCCAGGATTCCACGATTCCGGATGATAATCAGAAATCGAGAGGCACAAACGCGTGTTCGTCGCGAAACGTCCGTTCGGAGTGATCATTGTGATAGCTGGTGGACTCCACGGAAAGTTCTCCTTGAAGATCACTTTTCCCCAATAGAATCCTCCCTGGAACGGAGTGTCTGGACTTCCACGAAGACAATAGTGCCACTCGAGAATGTTCTCCTCGTTGGGCAACGCTTTGATTCCATCCACTGGGTCCTGCATGAGCTTCGCAAAGTCCTTCTGGAGACGACGGATCGCTGTGGCCGACGCGGAGCCAGCTGGTGGAACGGCGACACCGGGACCCTTAAGCTTAAGATTATTAGACGGGATTTTAACTTTTTGGACATTTTTAGGCTCAAAAATCTATTCATTTTGTGCTGAAAGTCATGGAAATTCACCAAAAAATCGAACCTGAGTTTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATARAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCATGGAAATTCACCAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGAGCCTAAAAATAGGTTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>352</pcr_amplicon_size>
		<canonical_amplicon>GTCATGGAAATTCACCAAAAAATCGAACCTGAGTTTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCA</canonical_amplicon>
		<polymorphic_amplicon>GTCATGGAAATTCACCAAAAAATCGAACCTGAGTTTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATARAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27496</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>551690</contig_pos>
        <strand>+</strand>
        <context>ATARAGAAAT[A/T]TTAAAGCtca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATAAAGAAAT</left_flank>
        <right_flank>TTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTC</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTCCACGATTCCGGATGATAATCAGAAATCGAGAGGCACAAACGCGTGTTCGTCGCGAAACGTCCGTTCGGAGTGATCATTGTGATAGCTGGTGGACTCCACGGAAAGTTCTCCTTGAAGATCACTTTTCCCCAATAGAATCCTCCCTGGAACGGAGTGTCTGGACTTCCACGAAGACAATAGTGCCACTCGAGAATGTTCTCCTCGTTGGGCAACGCTTTGATTCCATCCACTGGGTCCTGCATGAGCTTCGCAAAGTCCTTCTGGAGACGACGGATCGCTGTGGCCGACGCGGAGCCAGCTGGTGGAACGGCGACACCGGGACCCTTAAGCTTAAGATTATTAGACGGGATTTTAACTTTTTGGACATTTTTAGGCTCAAAAATCTATTCATTTTGTGCTGAAAGTCATGGAAATTCACCAAAAAATCGAACCTGAGTTTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTT</canonical>
            <polymorphic>GATTCCACGATTCCGGATGATAATCAGAAATCGAGAGGCACAAACGCGTGTTCGTCGCGAAACGTCCGTTCGGAGTGATCATTGTGATAGCTGGTGGACTCCACGGAAAGTTCTCCTTGAAGATCACTTTTCCCCAATAGAATCCTCCCTGGAACGGAGTGTCTGGACTTCCACGAAGACAATAGTGCCACTCGAGAATGTTCTCCTCGTTGGGCAACGCTTTGATTCCATCCACTGGGTCCTGCATGAGCTTCGCAAAGTCCTTCTGGAGACGACGGATCGCTGTGGCCGACGCGGAGCCAGCTGGTGGAACGGCGACACCGGGACCCTTAAGCTTAAGATTATTAGACGGGATTTTAACTTTTTGGACATTTTTAGGCTCAAAAATCTATTCATTTTGTGCTGAAAGTCATGGAAATTCACCAAAAAATCGAACCTGAGTTTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATAAAGAAATWTTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 480 21</canonical_bands>
                <polymorphic_bands>979 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCATGGAAATTCACCAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGAGCCTAAAAATAGGTTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>352</pcr_amplicon_size>
		<canonical_amplicon>GTCATGGAAATTCACCAAAAAATCGAACCTGAGTTTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCA</canonical_amplicon>
		<polymorphic_amplicon>GTCATGGAAATTCACCAAAAAATCGAACCTGAGTTTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATAAAGAAATWTTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27497</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>551755</contig_pos>
        <strand></strand>
        <context>atcagatttt[C/G]cgaaaaattg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTT</left_flank>
        <right_flank>CGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGTTCGGAGTGATCATTGTGATAGCTGGTGGACTCCACGGAAAGTTCTCCTTGAAGATCACTTTTCCCCAATAGAATCCTCCCTGGAACGGAGTGTCTGGACTTCCACGAAGACAATAGTGCCACTCGAGAATGTTCTCCTCGTTGGGCAACGCTTTGATTCCATCCACTGGGTCCTGCATGAGCTTCGCAAAGTCCTTCTGGAGACGACGGATCGCTGTGGCCGACGCGGAGCCAGCTGGTGGAACGGCGACACCGGGACCCTTAAGCTTAAGATTATTAGACGGGATTTTAACTTTTTGGACATTTTTAGGCTCAAAAATCTATTCATTTTGTGCTGAAAGTCATGGAAATTCACCAAAAAATCGAACCTGAGTTTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGAAAAAAAATAGAAGAGAGACAG</canonical>
            <polymorphic>CCGTTCGGAGTGATCATTGTGATAGCTGGTGGACTCCACGGAAAGTTCTCCTTGAAGATCACTTTTCCCCAATAGAATCCTCCCTGGAACGGAGTGTCTGGACTTCCACGAAGACAATAGTGCCACTCGAGAATGTTCTCCTCGTTGGGCAACGCTTTGATTCCATCCACTGGGTCCTGCATGAGCTTCGCAAAGTCCTTCTGGAGACGACGGATCGCTGTGGCCGACGCGGAGCCAGCTGGTGGAACGGCGACACCGGGACCCTTAAGCTTAAGATTATTAGACGGGATTTTAACTTTTTGGACATTTTTAGGCTCAAAAATCTATTCATTTTGTGCTGAAAGTCATGGAAATTCACCAAAAAATCGAACCTGAGTTTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTSCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGAAAAAAAATAGAAGAGAGACAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>486 144 120 104 75 56 8 7</canonical_bands>
                <polymorphic_bands>486 152 120 104 75 56 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGAAAAGCTGTTTTCTAATA</pcr_primer_p1>
		<pcr_primer_p2>TGAGCCTAAAAATAGGTTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>GCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCA</canonical_amplicon>
		<polymorphic_amplicon>GCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTSCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27498</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>551772</contig_pos>
        <strand></strand>
        <context>attgctcggg[C/T]ggcctagtgg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGG</left_flank>
        <right_flank>GGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGATAGCTGGTGGACTCCACGGAAAGTTCTCCTTGAAGATCACTTTTCCCCAATAGAATCCTCCCTGGAACGGAGTGTCTGGACTTCCACGAAGACAATAGTGCCACTCGAGAATGTTCTCCTCGTTGGGCAACGCTTTGATTCCATCCACTGGGTCCTGCATGAGCTTCGCAAAGTCCTTCTGGAGACGACGGATCGCTGTGGCCGACGCGGAGCCAGCTGGTGGAACGGCGACACCGGGACCCTTAAGCTTAAGATTATTAGACGGGATTTTAACTTTTTGGACATTTTTAGGCTCAAAAATCTATTCATTTTGTGCTGAAAGTCATGGAAATTCACCAAAAAATCGAACCTGAGTTTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGAAAAAAAATAGAAGAGAGACAGGAAAGAAAGAAAGGAAT</canonical>
            <polymorphic>TGTGATAGCTGGTGGACTCCACGGAAAGTTCTCCTTGAAGATCACTTTTCCCCAATAGAATCCTCCCTGGAACGGAGTGTCTGGACTTCCACGAAGACAATAGTGCCACTCGAGAATGTTCTCCTCGTTGGGCAACGCTTTGATTCCATCCACTGGGTCCTGCATGAGCTTCGCAAAGTCCTTCTGGAGACGACGGATCGCTGTGGCCGACGCGGAGCCAGCTGGTGGAACGGCGACACCGGGACCCTTAAGCTTAAGATTATTAGACGGGATTTTAACTTTTTGGACATTTTTAGGCTCAAAAATCTATTCATTTTGTGCTGAAAGTCATGGAAATTCACCAAAAAATCGAACCTGAGTTTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGYGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGAAAAAAAATAGAAGAGAGACAGGAAAGAAAGAAAGGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>498 376 126</canonical_bands>
                <polymorphic_bands>624 376</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>498 376 126</canonical_bands>
                <polymorphic_bands>624 376</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGAAAAGCTGTTTTCTAATA</pcr_primer_p1>
		<pcr_primer_p2>TGAGCCTAAAAATAGGTTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>GCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCA</canonical_amplicon>
		<polymorphic_amplicon>GCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGYGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27499</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>551804</contig_pos>
        <strand></strand>
        <context>gacattttgg[T/A]gkcaatgagt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGG</left_flank>
        <right_flank>GGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTGAAGATCACTTTTCCCCAATAGAATCCTCCCTGGAACGGAGTGTCTGGACTTCCACGAAGACAATAGTGCCACTCGAGAATGTTCTCCTCGTTGGGCAACGCTTTGATTCCATCCACTGGGTCCTGCATGAGCTTCGCAAAGTCCTTCTGGAGACGACGGATCGCTGTGGCCGACGCGGAGCCAGCTGGTGGAACGGCGACACCGGGACCCTTAAGCTTAAGATTATTAGACGGGATTTTAACTTTTTGGACATTTTTAGGCTCAAAAATCTATTCATTTTGTGCTGAAAGTCATGGAAATTCACCAAAAAATCGAACCTGAGTTTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGAAAAAAAATAGAAGAGAGACAGGAAAGAAAGAAAGGAATCACAGCAGCTATCAACGAAAAAAATAATTAAT</canonical>
            <polymorphic>CCTTGAAGATCACTTTTCCCCAATAGAATCCTCCCTGGAACGGAGTGTCTGGACTTCCACGAAGACAATAGTGCCACTCGAGAATGTTCTCCTCGTTGGGCAACGCTTTGATTCCATCCACTGGGTCCTGCATGAGCTTCGCAAAGTCCTTCTGGAGACGACGGATCGCTGTGGCCGACGCGGAGCCAGCTGGTGGAACGGCGACACCGGGACCCTTAAGCTTAAGATTATTAGACGGGATTTTAACTTTTTGGACATTTTTAGGCTCAAAAATCTATTCATTTTGTGCTGAAAGTCATGGAAATTCACCAAAAAATCGAACCTGAGTTTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGWGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGAAAAAAAATAGAAGAGAGACAGGAAAGAAAGAAAGGAATCACAGCAGCTATCAACGAAAAAAATAATTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>131 86 83 82 64 64 60 56 53 44 41 35 30 26 24 22 21 20 14 12 12 11 6 3</canonical_bands>
                <polymorphic_bands>131 86 83 82 64 64 60 56 53 50 44 41 35 30 22 21 20 14 12 12 11 6 3</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGAAAAGCTGTTTTCTAATA</pcr_primer_p1>
		<pcr_primer_p2>TGAGCCTAAAAATAGGTTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>GCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCA</canonical_amplicon>
		<polymorphic_amplicon>GCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGWGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27500</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>551806</contig_pos>
        <strand></strand>
        <context>cattttggwg[G/T]caatgagtct</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTG</left_flank>
        <right_flank>CAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAGATCACTTTTCCCCAATAGAATCCTCCCTGGAACGGAGTGTCTGGACTTCCACGAAGACAATAGTGCCACTCGAGAATGTTCTCCTCGTTGGGCAACGCTTTGATTCCATCCACTGGGTCCTGCATGAGCTTCGCAAAGTCCTTCTGGAGACGACGGATCGCTGTGGCCGACGCGGAGCCAGCTGGTGGAACGGCGACACCGGGACCCTTAAGCTTAAGATTATTAGACGGGATTTTAACTTTTTGGACATTTTTAGGCTCAAAAATCTATTCATTTTGTGCTGAAAGTCATGGAAATTCACCAAAAAATCGAACCTGAGTTTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGAAAAAAAATAGAAGAGAGACAGGAAAGAAAGAAAGGAATCACAGCAGCTATCAACGAAAAAAATAATTAATTG</canonical>
            <polymorphic>TTGAAGATCACTTTTCCCCAATAGAATCCTCCCTGGAACGGAGTGTCTGGACTTCCACGAAGACAATAGTGCCACTCGAGAATGTTCTCCTCGTTGGGCAACGCTTTGATTCCATCCACTGGGTCCTGCATGAGCTTCGCAAAGTCCTTCTGGAGACGACGGATCGCTGTGGCCGACGCGGAGCCAGCTGGTGGAACGGCGACACCGGGACCCTTAAGCTTAAGATTATTAGACGGGATTTTAACTTTTTGGACATTTTTAGGCTCAAAAATCTATTCATTTTGTGCTGAAAGTCATGGAAATTCACCAAAAAATCGAACCTGAGTTTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGKCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGAAAAAAAATAGAAGAGAGACAGGAAAGAAAGAAAGGAATCACAGCAGCTATCAACGAAAAAAATAATTAATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGAAAAGCTGTTTTCTAATA</pcr_primer_p1>
		<pcr_primer_p2>TGAGCCTAAAAATAGGTTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>GCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCA</canonical_amplicon>
		<polymorphic_amplicon>GCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGKCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27501</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>551846</contig_pos>
        <strand></strand>
        <context>tggcaaaaat[G/A]tttttagagg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAAT</left_flank>
        <right_flank>TTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTGTCTGGACTTCCACGAAGACAATAGTGCCACTCGAGAATGTTCTCCTCGTTGGGCAACGCTTTGATTCCATCCACTGGGTCCTGCATGAGCTTCGCAAAGTCCTTCTGGAGACGACGGATCGCTGTGGCCGACGCGGAGCCAGCTGGTGGAACGGCGACACCGGGACCCTTAAGCTTAAGATTATTAGACGGGATTTTAACTTTTTGGACATTTTTAGGCTCAAAAATCTATTCATTTTGTGCTGAAAGTCATGGAAATTCACCAAAAAATCGAACCTGAGTTTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGAAAAAAAATAGAAGAGAGACAGGAAAGAAAGAAAGGAATCACAGCAGCTATCAACGAAAAAAATAATTAATTGGCTAATTAATCAAAATAAATTAGTGTATTTTATTCAGTTT</canonical>
            <polymorphic>GAGTGTCTGGACTTCCACGAAGACAATAGTGCCACTCGAGAATGTTCTCCTCGTTGGGCAACGCTTTGATTCCATCCACTGGGTCCTGCATGAGCTTCGCAAAGTCCTTCTGGAGACGACGGATCGCTGTGGCCGACGCGGAGCCAGCTGGTGGAACGGCGACACCGGGACCCTTAAGCTTAAGATTATTAGACGGGATTTTAACTTTTTGGACATTTTTAGGCTCAAAAATCTATTCATTTTGTGCTGAAAGTCATGGAAATTCACCAAAAAATCGAACCTGAGTTTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATRTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGAAAAAAAATAGAAGAGAGACAGGAAAGAAAGAAAGGAATCACAGCAGCTATCAACGAAAAAAATAATTAATTGGCTAATTAATCAAAATAAATTAGTGTATTTTATTCAGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGAAAAGCTGTTTTCTAATA</pcr_primer_p1>
		<pcr_primer_p2>TGAGCCTAAAAATAGGTTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>GCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCA</canonical_amplicon>
		<polymorphic_amplicon>GCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATRTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27502</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>551865</contig_pos>
        <strand></strand>
        <context>ggttttcagt[T/C]gccgaaaatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGT</left_flank>
        <right_flank>GCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGACAATAGTGCCACTCGAGAATGTTCTCCTCGTTGGGCAACGCTTTGATTCCATCCACTGGGTCCTGCATGAGCTTCGCAAAGTCCTTCTGGAGACGACGGATCGCTGTGGCCGACGCGGAGCCAGCTGGTGGAACGGCGACACCGGGACCCTTAAGCTTAAGATTATTAGACGGGATTTTAACTTTTTGGACATTTTTAGGCTCAAAAATCTATTCATTTTGTGCTGAAAGTCATGGAAATTCACCAAAAAATCGAACCTGAGTTTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGAAAAAAAATAGAAGAGAGACAGGAAAGAAAGAAAGGAATCACAGCAGCTATCAACGAAAAAAATAATTAATTGGCTAATTAATCAAAATAAATTAGTGTATTTTATTCAGTTTTTGAAAAAAAAAGAAAGAG</canonical>
            <polymorphic>AAGACAATAGTGCCACTCGAGAATGTTCTCCTCGTTGGGCAACGCTTTGATTCCATCCACTGGGTCCTGCATGAGCTTCGCAAAGTCCTTCTGGAGACGACGGATCGCTGTGGCCGACGCGGAGCCAGCTGGTGGAACGGCGACACCGGGACCCTTAAGCTTAAGATTATTAGACGGGATTTTAACTTTTTGGACATTTTTAGGCTCAAAAATCTATTCATTTTGTGCTGAAAGTCATGGAAATTCACCAAAAAATCGAACCTGAGTTTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTYGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGAAAAAAAATAGAAGAGAGACAGGAAAGAAAGAAAGGAATCACAGCAGCTATCAACGAAAAAAATAATTAATTGGCTAATTAATCAAAATAAATTAGTGTATTTTATTCAGTTTTTGAAAAAAAAAGAAAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGAAAAGCTGTTTTCTAATA</pcr_primer_p1>
		<pcr_primer_p2>TGAGCCTAAAAATAGGTTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>GCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCA</canonical_amplicon>
		<polymorphic_amplicon>GCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTYGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27503</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>551928</contig_pos>
        <strand></strand>
        <context>attttCAACT[A/G]TTTGAACCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACT</left_flank>
        <right_flank>TTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCTGCATGAGCTTCGCAAAGTCCTTCTGGAGACGACGGATCGCTGTGGCCGACGCGGAGCCAGCTGGTGGAACGGCGACACCGGGACCCTTAAGCTTAAGATTATTAGACGGGATTTTAACTTTTTGGACATTTTTAGGCTCAAAAATCTATTCATTTTGTGCTGAAAGTCATGGAAATTCACCAAAAAATCGAACCTGAGTTTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGAAAAAAAATAGAAGAGAGACAGGAAAGAAAGAAAGGAATCACAGCAGCTATCAACGAAAAAAATAATTAATTGGCTAATTAATCAAAATAAATTAGTGTATTTTATTCAGTTTTTGAAAAAAAAAGAAAGAGAGAAAAAGTGAAAATCCCGGCTGGTCGTCCAGGGTGAACGAAGTGCAGCAGCAGCCGGGGGAC</canonical>
            <polymorphic>GTCCTGCATGAGCTTCGCAAAGTCCTTCTGGAGACGACGGATCGCTGTGGCCGACGCGGAGCCAGCTGGTGGAACGGCGACACCGGGACCCTTAAGCTTAAGATTATTAGACGGGATTTTAACTTTTTGGACATTTTTAGGCTCAAAAATCTATTCATTTTGTGCTGAAAGTCATGGAAATTCACCAAAAAATCGAACCTGAGTTTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTRTTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGAAAAAAAATAGAAGAGAGACAGGAAAGAAAGAAAGGAATCACAGCAGCTATCAACGAAAAAAATAATTAATTGGCTAATTAATCAAAATAAATTAGTGTATTTTATTCAGTTTTTGAAAAAAAAAGAAAGAGAGAAAAAGTGAAAATCCCGGCTGGTCGTCCAGGGTGAACGAAGTGCAGCAGCAGCCGGGGGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGAAAAGCTGTTTTCTAATA</pcr_primer_p1>
		<pcr_primer_p2>GTTGAACTTGGTGAGTTTTAGG</pcr_primer_p2>
		<pcr_amplicon_size>339</pcr_amplicon_size>
		<canonical_amplicon>GCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAAC</canonical_amplicon>
		<polymorphic_amplicon>GCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTRTTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27504</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>551959</contig_pos>
        <strand>+</strand>
        <context>CAAAATCCGA[A/G]TTTTTTTCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGA</left_flank>
        <right_flank>TTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACGACGGATCGCTGTGGCCGACGCGGAGCCAGCTGGTGGAACGGCGACACCGGGACCCTTAAGCTTAAGATTATTAGACGGGATTTTAACTTTTTGGACATTTTTAGGCTCAAAAATCTATTCATTTTGTGCTGAAAGTCATGGAAATTCACCAAAAAATCGAACCTGAGTTTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGAAAAAAAATAGAAGAGAGACAGGAAAGAAAGAAAGGAATCACAGCAGCTATCAACGAAAAAAATAATTAATTGGCTAATTAATCAAAATAAATTAGTGTATTTTATTCAGTTTTTGAAAAAAAAAGAAAGAGAGAAAAAGTGAAAATCCCGGCTGGTCGTCCAGGGTGAACGAAGTGCAGCAGCAGCCGGGGGACGAGAAGTGAAGCGAGAGTGACGAGAGATAAA</canonical>
            <polymorphic>AGACGACGGATCGCTGTGGCCGACGCGGAGCCAGCTGGTGGAACGGCGACACCGGGACCCTTAAGCTTAAGATTATTAGACGGGATTTTAACTTTTTGGACATTTTTAGGCTCAAAAATCTATTCATTTTGTGCTGAAAGTCATGGAAATTCACCAAAAAATCGAACCTGAGTTTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGARTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGAAAAAAAATAGAAGAGAGACAGGAAAGAAAGAAAGGAATCACAGCAGCTATCAACGAAAAAAATAATTAATTGGCTAATTAATCAAAATAAATTAGTGTATTTTATTCAGTTTTTGAAAAAAAAAGAAAGAGAGAAAAAGTGAAAATCCCGGCTGGTCGTCCAGGGTGAACGAAGTGCAGCAGCAGCCGGGGGACGAGAAGTGAAGCGAGAGTGACGAGAGATAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGAAAAGCTGTTTTCTAATA</pcr_primer_p1>
		<pcr_primer_p2>AAATATAGGAAATAATGTTGAACTTG</pcr_primer_p2>
		<pcr_amplicon_size>355</pcr_amplicon_size>
		<canonical_amplicon>GCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTT</canonical_amplicon>
		<polymorphic_amplicon>GCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGARTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27505</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>551978</contig_pos>
        <strand></strand>
        <context>ACTTTTTCTA[A/G]CCTAAAACTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTA</left_flank>
        <right_flank>CCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGACGCGGAGCCAGCTGGTGGAACGGCGACACCGGGACCCTTAAGCTTAAGATTATTAGACGGGATTTTAACTTTTTGGACATTTTTAGGCTCAAAAATCTATTCATTTTGTGCTGAAAGTCATGGAAATTCACCAAAAAATCGAACCTGAGTTTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGAAAAAAAATAGAAGAGAGACAGGAAAGAAAGAAAGGAATCACAGCAGCTATCAACGAAAAAAATAATTAATTGGCTAATTAATCAAAATAAATTAGTGTATTTTATTCAGTTTTTGAAAAAAAAAGAAAGAGAGAAAAAGTGAAAATCCCGGCTGGTCGTCCAGGGTGAACGAAGTGCAGCAGCAGCCGGGGGACGAGAAGTGAAGCGAGAGTGACGAGAGATAAAGAGACGCAGACAGCGATAC</canonical>
            <polymorphic>CCGACGCGGAGCCAGCTGGTGGAACGGCGACACCGGGACCCTTAAGCTTAAGATTATTAGACGGGATTTTAACTTTTTGGACATTTTTAGGCTCAAAAATCTATTCATTTTGTGCTGAAAGTCATGGAAATTCACCAAAAAATCGAACCTGAGTTTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTARCCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGAAAAAAAATAGAAGAGAGACAGGAAAGAAAGAAAGGAATCACAGCAGCTATCAACGAAAAAAATAATTAATTGGCTAATTAATCAAAATAAATTAGTGTATTTTATTCAGTTTTTGAAAAAAAAAGAAAGAGAGAAAAAGTGAAAATCCCGGCTGGTCGTCCAGGGTGAACGAAGTGCAGCAGCAGCCGGGGGACGAGAAGTGAAGCGAGAGTGACGAGAGATAAAGAGACGCAGACAGCGATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGAAAAGCTGTTTTCTAATA</pcr_primer_p1>
		<pcr_primer_p2>GATCAGAGCTGAAAGGAATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>374</pcr_amplicon_size>
		<canonical_amplicon>GCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATC</canonical_amplicon>
		<polymorphic_amplicon>GCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTARCCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27506</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>552039</contig_pos>
        <strand>+</strand>
        <context>TCTGATCGCC[C/T]AAAAGCCTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCC</left_flank>
        <right_flank>AAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGGATTTTAACTTTTTGGACATTTTTAGGCTCAAAAATCTATTCATTTTGTGCTGAAAGTCATGGAAATTCACCAAAAAATCGAACCTGAGTTTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGAAAAAAAATAGAAGAGAGACAGGAAAGAAAGAAAGGAATCACAGCAGCTATCAACGAAAAAAATAATTAATTGGCTAATTAATCAAAATAAATTAGTGTATTTTATTCAGTTTTTGAAAAAAAAAGAAAGAGAGAAAAAGTGAAAATCCCGGCTGGTCGTCCAGGGTGAACGAAGTGCAGCAGCAGCCGGGGGACGAGAAGTGAAGCGAGAGTGACGAGAGATAAAGAGACGCAGACAGCGATACGGAAGGAACGATGATGAGGTGGCGGCAGCGGTGGCAGAGGGCGGGTGTCTCTCCGTCGTTT</canonical>
            <polymorphic>CGGGATTTTAACTTTTTGGACATTTTTAGGCTCAAAAATCTATTCATTTTGTGCTGAAAGTCATGGAAATTCACCAAAAAATCGAACCTGAGTTTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCYAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGAAAAAAAATAGAAGAGAGACAGGAAAGAAAGAAAGGAATCACAGCAGCTATCAACGAAAAAAATAATTAATTGGCTAATTAATCAAAATAAATTAGTGTATTTTATTCAGTTTTTGAAAAAAAAAGAAAGAGAGAAAAAGTGAAAATCCCGGCTGGTCGTCCAGGGTGAACGAAGTGCAGCAGCAGCCGGGGGACGAGAAGTGAAGCGAGAGTGACGAGAGATAAAGAGACGCAGACAGCGATACGGAAGGAACGATGATGAGGTGGCGGCAGCGGTGGCAGAGGGCGGGTGTCTCTCCGTCGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTCACCAAGTTCAACATTA</pcr_primer_p1>
		<pcr_primer_p2>GATTTACTACGCAAACAAAACAC</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>AAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATC</canonical_amplicon>
		<polymorphic_amplicon>AAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCYAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27507</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>552087</contig_pos>
        <strand>+</strand>
        <context>AAACTGCGCC[C/T]AWTGTCCTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCC</left_flank>
        <right_flank>ATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTGCTGAAAGTCATGGAAATTCACCAAAAAATCGAACCTGAGTTTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGAAAAAAAATAGAAGAGAGACAGGAAAGAAAGAAAGGAATCACAGCAGCTATCAACGAAAAAAATAATTAATTGGCTAATTAATCAAAATAAATTAGTGTATTTTATTCAGTTTTTGAAAAAAAAAGAAAGAGAGAAAAAGTGAAAATCCCGGCTGGTCGTCCAGGGTGAACGAAGTGCAGCAGCAGCCGGGGGACGAGAAGTGAAGCGAGAGTGACGAGAGATAAAGAGACGCAGACAGCGATACGGAAGGAACGATGATGAGGTGGCGGCAGCGGTGGCAGAGGGCGGGTGTCTCTCCGTCGTTTCGATTAGAAATCTCTGAAAATGCTTATGTGTGTGGCTGGGAAAAAAGA</canonical>
            <polymorphic>TTGTGCTGAAAGTCATGGAAATTCACCAAAAAATCGAACCTGAGTTTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCYATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGAAAAAAAATAGAAGAGAGACAGGAAAGAAAGAAAGGAATCACAGCAGCTATCAACGAAAAAAATAATTAATTGGCTAATTAATCAAAATAAATTAGTGTATTTTATTCAGTTTTTGAAAAAAAAAGAAAGAGAGAAAAAGTGAAAATCCCGGCTGGTCGTCCAGGGTGAACGAAGTGCAGCAGCAGCCGGGGGACGAGAAGTGAAGCGAGAGTGACGAGAGATAAAGAGACGCAGACAGCGATACGGAAGGAACGATGATGAGGTGGCGGCAGCGGTGGCAGAGGGCGGGTGTCTCTCCGTCGTTTCGATTAGAAATCTCTGAAAATGCTTATGTGTGTGGCTGGGAAAAAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>BstXI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACTCACCAAGTTCAACATTA</pcr_primer_p1>
		<pcr_primer_p2>GATTTACTACGCAAACAAAACAC</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>AAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATC</canonical_amplicon>
		<polymorphic_amplicon>AAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCYATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27508</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>552089</contig_pos>
        <strand>+</strand>
        <context>ACTGCGCCYA[A/T]TGTCCTGGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCA</left_flank>
        <right_flank>TGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGCTGAAAGTCATGGAAATTCACCAAAAAATCGAACCTGAGTTTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGAAAAAAAATAGAAGAGAGACAGGAAAGAAAGAAAGGAATCACAGCAGCTATCAACGAAAAAAATAATTAATTGGCTAATTAATCAAAATAAATTAGTGTATTTTATTCAGTTTTTGAAAAAAAAAGAAAGAGAGAAAAAGTGAAAATCCCGGCTGGTCGTCCAGGGTGAACGAAGTGCAGCAGCAGCCGGGGGACGAGAAGTGAAGCGAGAGTGACGAGAGATAAAGAGACGCAGACAGCGATACGGAAGGAACGATGATGAGGTGGCGGCAGCGGTGGCAGAGGGCGGGTGTCTCTCCGTCGTTTCGATTAGAAATCTCTGAAAATGCTTATGTGTGTGGCTGGGAAAAAAGAGG</canonical>
            <polymorphic>GTGCTGAAAGTCATGGAAATTCACCAAAAAATCGAACCTGAGTTTTCTAGTCCCTGCGGCCGTGGCCAGCGCGCGAAAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCAWTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGAAAAAAAATAGAAGAGAGACAGGAAAGAAAGAAAGGAATCACAGCAGCTATCAACGAAAAAAATAATTAATTGGCTAATTAATCAAAATAAATTAGTGTATTTTATTCAGTTTTTGAAAAAAAAAGAAAGAGAGAAAAAGTGAAAATCCCGGCTGGTCGTCCAGGGTGAACGAAGTGCAGCAGCAGCCGGGGGACGAGAAGTGAAGCGAGAGTGACGAGAGATAAAGAGACGCAGACAGCGATACGGAAGGAACGATGATGAGGTGGCGGCAGCGGTGGCAGAGGGCGGGTGTCTCTCCGTCGTTTCGATTAGAAATCTCTGAAAATGCTTATGTGTGTGGCTGGGAAAAAAGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTCACCAAGTTCAACATTA</pcr_primer_p1>
		<pcr_primer_p2>GATTTACTACGCAAACAAAACAC</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>AAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATC</canonical_amplicon>
		<polymorphic_amplicon>AAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCAWTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27509</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>552165</contig_pos>
        <strand>+</strand>
        <context>AAAAAATAGA[G/T]AAATATTTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGA</left_flank>
        <right_flank>AAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATCCATCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGAAAAAAAATAGAAGAGAGACAGGAAAGAAAGAAAGGAATCACAGCAGCTATCAACGAAAAAAATAATTAATTGGCTAATTAATCAAAATAAATTAGTGTATTTTATTCAGTTTTTGAAAAAAAAAGAAAGAGAGAAAAAGTGAAAATCCCGGCTGGTCGTCCAGGGTGAACGAAGTGCAGCAGCAGCCGGGGGACGAGAAGTGAAGCGAGAGTGACGAGAGATAAAGAGACGCAGACAGCGATACGGAAGGAACGATGATGAGGTGGCGGCAGCGGTGGCAGAGGGCGGGTGTCTCTCCGTCGTTTCGATTAGAAATCTCTGAAAATGCTTATGTGTGTGGCTGGGAAAAAAGAGGGGAACAAGTGAATAGAGGGCGAGCGAAAGGGGTAAGGGCGAGCAATGCTTACGTATGATAAGGCCCCCTTATCACG</canonical>
            <polymorphic>AAAGCTGTTTTCTAATAAAGAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGAKAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGAAAAAAAATAGAAGAGAGACAGGAAAGAAAGAAAGGAATCACAGCAGCTATCAACGAAAAAAATAATTAATTGGCTAATTAATCAAAATAAATTAGTGTATTTTATTCAGTTTTTGAAAAAAAAAGAAAGAGAGAAAAAGTGAAAATCCCGGCTGGTCGTCCAGGGTGAACGAAGTGCAGCAGCAGCCGGGGGACGAGAAGTGAAGCGAGAGTGACGAGAGATAAAGAGACGCAGACAGCGATACGGAAGGAACGATGATGAGGTGGCGGCAGCGGTGGCAGAGGGCGGGTGTCTCTCCGTCGTTTCGATTAGAAATCTCTGAAAATGCTTATGTGTGTGGCTGGGAAAAAAGAGGGGAACAAGTGAATAGAGGGCGAGCGAAAGGGGTAAGGGCGAGCAATGCTTACGTATGATAAGGCCCCCTTATCACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAGATAAATTTCGGTGTCA</pcr_primer_p1>
		<pcr_primer_p2>TTCACTTTTTCTCTCTTTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>CAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGAAAAAAAATAGAAGAGAGACAGGAAAGAAAGAAAGGAATCACAGCAGCTATCAACGAAAAAAATAATTAATTGGCTAATTAATCAAAATAAATTAGTGTATTTTATTCAGTTTTTGAAAAAAAAAGAAAGAGAGAAAAAGTGAA</canonical_amplicon>
		<polymorphic_amplicon>CAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGAKAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGAAAAAAAATAGAAGAGAGACAGGAAAGAAAGAAAGGAATCACAGCAGCTATCAACGAAAAAAATAATTAATTGGCTAATTAATCAAAATAAATTAGTGTATTTTATTCAGTTTTTGAAAAAAAAAGAAAGAGAGAAAAAGTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27510</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>552184</contig_pos>
        <strand>+</strand>
        <context>AAAGAAACAA[A/G]GGTGTTTTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAA</left_flank>
        <right_flank>GGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGA</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGAAAAAAAATAGAAGAGAGACAGGAAAGAAAGAAAGGAATCACAGCAGCTATCAACGAAAAAAATAATTAATTGGCTAATTAATCAAAATAAATTAGTGTATTTTATTCAGTTTTTGAAAAAAAAAGAAAGAGAGAAAAAGTGAAAATCCCGGCTGGTCGTCCAGGGTGAACGAAGTGCAGCAGCAGCCGGGGGACGAGAAGTGAAGCGAGAGTGACGAGAGATAAAGAGACGCAGACAGCGATACGGAAGGAACGATGATGAGGTGGCGGCAGCGGTGGCAGAGGGCGGGTGTCTCTCCGTCGTTTCGATTAGAAATCTCTGAAAATGCTTATGTGTGTGGCTGGGAAAAAAGAGGGGAACAAGTGAATAGAGGGCGAGCGAAAGGGGTAAGGGCGAGCAATGCTTACGTATGATAAGGCCCCCTTATCACGAGGGGATCGATATGTCAGA</canonical>
            <polymorphic>GAAATATTAAAGCTCAAAAACAGATTCAGGACACCCAAAAACCCATAATTCGGTTCAAAAATCAGATTTTCCGAAAAATTGCTCGGGCGGCCTAGTGGGATTTTCAACCGACATTTTGGTGGCAATGAGTCTCAGGTTCGAACCCCACCGGTGGCAAAAATGTTTTTAGAGGTTTTCAGTTGCCGAAAATTCGAAAACCGAGGTTTTGAAAGCTCAGAAAACGATTTTTGAGAATTTTCAACTATTTGAACCTATTTTTAGGCTCAAAATCCGATTTTTTTTCACTTTTTCTAACCTAAAACTCACCAAGTTCAACATTATTTCCTATATTTATTCCTTTCAGCTCTGATCGCCCAAAAGCCTCTCCCTGCAAAAATGAATTTTAGTGGCTGAAACTGCGCCCATTGTCCTGGAAATAAAAAAAAAAGAACAGAGATAAATTTCGGTGTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAARGGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGAAAAAAAATAGAAGAGAGACAGGAAAGAAAGAAAGGAATCACAGCAGCTATCAACGAAAAAAATAATTAATTGGCTAATTAATCAAAATAAATTAGTGTATTTTATTCAGTTTTTGAAAAAAAAAGAAAGAGAGAAAAAGTGAAAATCCCGGCTGGTCGTCCAGGGTGAACGAAGTGCAGCAGCAGCCGGGGGACGAGAAGTGAAGCGAGAGTGACGAGAGATAAAGAGACGCAGACAGCGATACGGAAGGAACGATGATGAGGTGGCGGCAGCGGTGGCAGAGGGCGGGTGTCTCTCCGTCGTTTCGATTAGAAATCTCTGAAAATGCTTATGTGTGTGGCTGGGAAAAAAGAGGGGAACAAGTGAATAGAGGGCGAGCGAAAGGGGTAAGGGCGAGCAATGCTTACGTATGATAAGGCCCCCTTATCACGAGGGGATCGATATGTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAGAAACCGTTAAAAATAGG</pcr_primer_p1>
		<pcr_primer_p2>GGATTTTCACTTTTTCTCTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAAGGGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGAAAAAAAATAGAAGAGAGACAGGAAAGAAAGAAAGGAATCACAGCAGCTATCAACGAAAAAAATAATTAATTGGCTAATTAATCAAAATAAATTAGTGTATTTTATTCAGTTTTTGAAAAAAAAAGAAAGAGAGAAAAAGTGAAAATCC</canonical_amplicon>
		<polymorphic_amplicon>GTCAGAAACCGTTAAAAATAGGCAAAAAATAGATAAATATTTAAAGAAACAARGGTGTTTTGTTTGCGTAGTAAATCCATCAAAAAATTACAAGCGAAAGAGAAAAAAAATAGAAGAGAGACAGGAAAGAAAGAAAGGAATCACAGCAGCTATCAACGAAAAAAATAATTAATTGGCTAATTAATCAAAATAAATTAGTGTATTTTATTCAGTTTTTGAAAAAAAAAGAAAGAGAGAAAAAGTGAAAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27511</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>558782</contig_pos>
        <strand></strand>
        <context>cctaaaacaa[C/T]tattttccgg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAA</left_flank>
        <right_flank>TATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTGGGTTGTTGTTGTTCGGTTTCTCGTTTCTTCAAAATTTGTTGATTCTGCTCGCTTCCCATTTTTTTAAATTCTTATTCTTCATTCAACCTCTGAACACCCAAATTTTGAATTTCTGTGAACAAATTCATTAAAAAAATCGAAAATTCCATTCTTCAAGTTTTTTCCTCTCTCACCCTTATCAGTAGTCCCCGTATTCTTTTTTCTATTTCTTACTATCTTTTTTTGTTGGCTCCAATACTTCAATCACCTGACCTGATTGATCGTCTCCAGAAACAAAACATTTCCTCTTTTTAAAAATTTTTTGAACACTTTAAGATGCTCTCCCCTCCAAGAGGATTATATGGCAATAGATTAGGAGTTGTAAGTTATAACACATTGAATTTTGCACGTTTTTTGTTTGTTGACAGTTGAGAAAAATTCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACAATCTGTTTACTTTATCAGGTGTTAACCAAATAATATCGAAACTGCAAAATTCAAATATTTGAAGAATTTTTTATATGCTGAGAAATTCAGTTTTATTTAGAAATATTGGTGGTTAGTGGATTACTGTAGTTTTGAAAAAA</canonical>
            <polymorphic>TGTTGGGTTGTTGTTGTTCGGTTTCTCGTTTCTTCAAAATTTGTTGATTCTGCTCGCTTCCCATTTTTTTAAATTCTTATTCTTCATTCAACCTCTGAACACCCAAATTTTGAATTTCTGTGAACAAATTCATTAAAAAAATCGAAAATTCCATTCTTCAAGTTTTTTCCTCTCTCACCCTTATCAGTAGTCCCCGTATTCTTTTTTCTATTTCTTACTATCTTTTTTTGTTGGCTCCAATACTTCAATCACCTGACCTGATTGATCGTCTCCAGAAACAAAACATTTCCTCTTTTTAAAAATTTTTTGAACACTTTAAGATGCTCTCCCCTCCAAGAGGATTATATGGCAATAGATTAGGAGTTGTAAGTTATAACACATTGAATTTTGCACGTTTTTTGTTTGTTGACAGTTGAGAAAAATTCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAAYTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACAATCTGTTTACTTTATCAGGTGTTAACCAAATAATATCGAAACTGCAAAATTCAAATATTTGAAGAATTTTTTATATGCTGAGAAATTCAGTTTTATTTAGAAATATTGGTGGTTAGTGGATTACTGTAGTTTTGAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGGGATACTGTATTTGTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTGCTGGAAAATATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>TCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACA</canonical_amplicon>
		<polymorphic_amplicon>TCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAAYTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27512</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>558800</contig_pos>
        <strand></strand>
        <context>cggatgtttt[C/A]ttgattttcg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTT</left_flank>
        <right_flank>TTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGTTTCTCGTTTCTTCAAAATTTGTTGATTCTGCTCGCTTCCCATTTTTTTAAATTCTTATTCTTCATTCAACCTCTGAACACCCAAATTTTGAATTTCTGTGAACAAATTCATTAAAAAAATCGAAAATTCCATTCTTCAAGTTTTTTCCTCTCTCACCCTTATCAGTAGTCCCCGTATTCTTTTTTCTATTTCTTACTATCTTTTTTTGTTGGCTCCAATACTTCAATCACCTGACCTGATTGATCGTCTCCAGAAACAAAACATTTCCTCTTTTTAAAAATTTTTTGAACACTTTAAGATGCTCTCCCCTCCAAGAGGATTATATGGCAATAGATTAGGAGTTGTAAGTTATAACACATTGAATTTTGCACGTTTTTTGTTTGTTGACAGTTGAGAAAAATTCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACAATCTGTTTACTTTATCAGGTGTTAACCAAATAATATCGAAACTGCAAAATTCAAATATTTGAAGAATTTTTTATATGCTGAGAAATTCAGTTTTATTTAGAAATATTGGTGGTTAGTGGATTACTGTAGTTTTGAAAAAAAACTTTAAATTTAAAATT</canonical>
            <polymorphic>CGGTTTCTCGTTTCTTCAAAATTTGTTGATTCTGCTCGCTTCCCATTTTTTTAAATTCTTATTCTTCATTCAACCTCTGAACACCCAAATTTTGAATTTCTGTGAACAAATTCATTAAAAAAATCGAAAATTCCATTCTTCAAGTTTTTTCCTCTCTCACCCTTATCAGTAGTCCCCGTATTCTTTTTTCTATTTCTTACTATCTTTTTTTGTTGGCTCCAATACTTCAATCACCTGACCTGATTGATCGTCTCCAGAAACAAAACATTTCCTCTTTTTAAAAATTTTTTGAACACTTTAAGATGCTCTCCCCTCCAAGAGGATTATATGGCAATAGATTAGGAGTTGTAAGTTATAACACATTGAATTTTGCACGTTTTTTGTTTGTTGACAGTTGAGAAAAATTCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTMTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACAATCTGTTTACTTTATCAGGTGTTAACCAAATAATATCGAAACTGCAAAATTCAAATATTTGAAGAATTTTTTATATGCTGAGAAATTCAGTTTTATTTAGAAATATTGGTGGTTAGTGGATTACTGTAGTTTTGAAAAAAAACTTTAAATTTAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>500 254 235 11</canonical_bands>
                <polymorphic_bands>511 254 235</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGGGATACTGTATTTGTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTGCTGGAAAATATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>TCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACA</canonical_amplicon>
		<polymorphic_amplicon>TCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTMTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27513</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>558838</contig_pos>
        <strand></strand>
        <context>tttttcactt[A/T]aaaaaaattt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTT</left_flank>
        <right_flank>AAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCCCATTTTTTTAAATTCTTATTCTTCATTCAACCTCTGAACACCCAAATTTTGAATTTCTGTGAACAAATTCATTAAAAAAATCGAAAATTCCATTCTTCAAGTTTTTTCCTCTCTCACCCTTATCAGTAGTCCCCGTATTCTTTTTTCTATTTCTTACTATCTTTTTTTGTTGGCTCCAATACTTCAATCACCTGACCTGATTGATCGTCTCCAGAAACAAAACATTTCCTCTTTTTAAAAATTTTTTGAACACTTTAAGATGCTCTCCCCTCCAAGAGGATTATATGGCAATAGATTAGGAGTTGTAAGTTATAACACATTGAATTTTGCACGTTTTTTGTTTGTTGACAGTTGAGAAAAATTCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACAATCTGTTTACTTTATCAGGTGTTAACCAAATAATATCGAAACTGCAAAATTCAAATATTTGAAGAATTTTTTATATGCTGAGAAATTCAGTTTTATTTAGAAATATTGGTGGTTAGTGGATTACTGTAGTTTTGAAAAAAAACTTTAAATTTAAAATTGTGATTCAAACTTCTCCATCGATCGGAAATTTCGATTT</canonical>
            <polymorphic>CTTCCCATTTTTTTAAATTCTTATTCTTCATTCAACCTCTGAACACCCAAATTTTGAATTTCTGTGAACAAATTCATTAAAAAAATCGAAAATTCCATTCTTCAAGTTTTTTCCTCTCTCACCCTTATCAGTAGTCCCCGTATTCTTTTTTCTATTTCTTACTATCTTTTTTTGTTGGCTCCAATACTTCAATCACCTGACCTGATTGATCGTCTCCAGAAACAAAACATTTCCTCTTTTTAAAAATTTTTTGAACACTTTAAGATGCTCTCCCCTCCAAGAGGATTATATGGCAATAGATTAGGAGTTGTAAGTTATAACACATTGAATTTTGCACGTTTTTTGTTTGTTGACAGTTGAGAAAAATTCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTWAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACAATCTGTTTACTTTATCAGGTGTTAACCAAATAATATCGAAACTGCAAAATTCAAATATTTGAAGAATTTTTTATATGCTGAGAAATTCAGTTTTATTTAGAAATATTGGTGGTTAGTGGATTACTGTAGTTTTGAAAAAAAACTTTAAATTTAAAATTGTGATTCAAACTTCTCCATCGATCGGAAATTTCGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>170 163 129 123 90 64 58 45 24 21 20 20 19 18 17 13 6</canonical_bands>
                <polymorphic_bands>170 163 129 123 90 64 58 45 37 24 21 20 20 17 13 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGGGATACTGTATTTGTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTGCTGGAAAATATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>TCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACA</canonical_amplicon>
		<polymorphic_amplicon>TCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTWAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27514</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>558855</contig_pos>
        <strand></strand>
        <context>atttcagatt[T/A]aaaaaaaatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATT</left_flank>
        <right_flank>AAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTATTCTTCATTCAACCTCTGAACACCCAAATTTTGAATTTCTGTGAACAAATTCATTAAAAAAATCGAAAATTCCATTCTTCAAGTTTTTTCCTCTCTCACCCTTATCAGTAGTCCCCGTATTCTTTTTTCTATTTCTTACTATCTTTTTTTGTTGGCTCCAATACTTCAATCACCTGACCTGATTGATCGTCTCCAGAAACAAAACATTTCCTCTTTTTAAAAATTTTTTGAACACTTTAAGATGCTCTCCCCTCCAAGAGGATTATATGGCAATAGATTAGGAGTTGTAAGTTATAACACATTGAATTTTGCACGTTTTTTGTTTGTTGACAGTTGAGAAAAATTCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACAATCTGTTTACTTTATCAGGTGTTAACCAAATAATATCGAAACTGCAAAATTCAAATATTTGAAGAATTTTTTATATGCTGAGAAATTCAGTTTTATTTAGAAATATTGGTGGTTAGTGGATTACTGTAGTTTTGAAAAAAAACTTTAAATTTAAAATTGTGATTCAAACTTCTCCATCGATCGGAAATTTCGATTTTTGAATTTCCGAGTTTT</canonical>
            <polymorphic>TTCTTATTCTTCATTCAACCTCTGAACACCCAAATTTTGAATTTCTGTGAACAAATTCATTAAAAAAATCGAAAATTCCATTCTTCAAGTTTTTTCCTCTCTCACCCTTATCAGTAGTCCCCGTATTCTTTTTTCTATTTCTTACTATCTTTTTTTGTTGGCTCCAATACTTCAATCACCTGACCTGATTGATCGTCTCCAGAAACAAAACATTTCCTCTTTTTAAAAATTTTTTGAACACTTTAAGATGCTCTCCCCTCCAAGAGGATTATATGGCAATAGATTAGGAGTTGTAAGTTATAACACATTGAATTTTGCACGTTTTTTGTTTGTTGACAGTTGAGAAAAATTCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTWAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACAATCTGTTTACTTTATCAGGTGTTAACCAAATAATATCGAAACTGCAAAATTCAAATATTTGAAGAATTTTTTATATGCTGAGAAATTCAGTTTTATTTAGAAATATTGGTGGTTAGTGGATTACTGTAGTTTTGAAAAAAAACTTTAAATTTAAAATTGTGATTCAAACTTCTCCATCGATCGGAAATTTCGATTTTTGAATTTCCGAGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>224 181 170 149 127 61 61 21 6</canonical_bands>
                <polymorphic_bands>224 181 170 149 148 61 61 6</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>170 163 129 123 90 62 60 58 24 21 20 20 19 18 17 6</canonical_bands>
                <polymorphic_bands>170 163 129 123 90 62 60 58 39 24 20 20 19 17 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGGGATACTGTATTTGTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTGCTGGAAAATATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>TCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACA</canonical_amplicon>
		<polymorphic_amplicon>TCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTWAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27515</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>558924</contig_pos>
        <strand></strand>
        <context>aagaaaaaaa[C/A]maaaaaaaaw</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAA</left_flank>
        <right_flank>AAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAAAATTCCATTCTTCAAGTTTTTTCCTCTCTCACCCTTATCAGTAGTCCCCGTATTCTTTTTTCTATTTCTTACTATCTTTTTTTGTTGGCTCCAATACTTCAATCACCTGACCTGATTGATCGTCTCCAGAAACAAAACATTTCCTCTTTTTAAAAATTTTTTGAACACTTTAAGATGCTCTCCCCTCCAAGAGGATTATATGGCAATAGATTAGGAGTTGTAAGTTATAACACATTGAATTTTGCACGTTTTTTGTTTGTTGACAGTTGAGAAAAATTCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACAATCTGTTTACTTTATCAGGTGTTAACCAAATAATATCGAAACTGCAAAATTCAAATATTTGAAGAATTTTTTATATGCTGAGAAATTCAGTTTTATTTAGAAATATTGGTGGTTAGTGGATTACTGTAGTTTTGAAAAAAAACTTTAAATTTAAAATTGTGATTCAAACTTCTCCATCGATCGGAAATTTCGATTTTTGAATTTCCGAGTTTTCAAAAACTATGAAACCTGTAATAGAAAGACCCCTAATTTTTTACTTCGGGCTAATTTATCTCGGTTCTT</canonical>
            <polymorphic>CGAAAATTCCATTCTTCAAGTTTTTTCCTCTCTCACCCTTATCAGTAGTCCCCGTATTCTTTTTTCTATTTCTTACTATCTTTTTTTGTTGGCTCCAATACTTCAATCACCTGACCTGATTGATCGTCTCCAGAAACAAAACATTTCCTCTTTTTAAAAATTTTTTGAACACTTTAAGATGCTCTCCCCTCCAAGAGGATTATATGGCAATAGATTAGGAGTTGTAAGTTATAACACATTGAATTTTGCACGTTTTTTGTTTGTTGACAGTTGAGAAAAATTCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAAMAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACAATCTGTTTACTTTATCAGGTGTTAACCAAATAATATCGAAACTGCAAAATTCAAATATTTGAAGAATTTTTTATATGCTGAGAAATTCAGTTTTATTTAGAAATATTGGTGGTTAGTGGATTACTGTAGTTTTGAAAAAAAACTTTAAATTTAAAATTGTGATTCAAACTTCTCCATCGATCGGAAATTTCGATTTTTGAATTTCCGAGTTTTCAAAAACTATGAAACCTGTAATAGAAAGACCCCTAATTTTTTACTTCGGGCTAATTTATCTCGGTTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGGGATACTGTATTTGTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTGCTGGAAAATATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>TCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACA</canonical_amplicon>
		<polymorphic_amplicon>TCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAAMAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27516</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>558925</contig_pos>
        <strand></strand>
        <context>agaaaaaaam[A/C]aaaaaaaawt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAAC</left_flank>
        <right_flank>AAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAATTCCATTCTTCAAGTTTTTTCCTCTCTCACCCTTATCAGTAGTCCCCGTATTCTTTTTTCTATTTCTTACTATCTTTTTTTGTTGGCTCCAATACTTCAATCACCTGACCTGATTGATCGTCTCCAGAAACAAAACATTTCCTCTTTTTAAAAATTTTTTGAACACTTTAAGATGCTCTCCCCTCCAAGAGGATTATATGGCAATAGATTAGGAGTTGTAAGTTATAACACATTGAATTTTGCACGTTTTTTGTTTGTTGACAGTTGAGAAAAATTCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACAATCTGTTTACTTTATCAGGTGTTAACCAAATAATATCGAAACTGCAAAATTCAAATATTTGAAGAATTTTTTATATGCTGAGAAATTCAGTTTTATTTAGAAATATTGGTGGTTAGTGGATTACTGTAGTTTTGAAAAAAAACTTTAAATTTAAAATTGTGATTCAAACTTCTCCATCGATCGGAAATTTCGATTTTTGAATTTCCGAGTTTTCAAAAACTATGAAACCTGTAATAGAAAGACCCCTAATTTTTTACTTCGGGCTAATTTATCTCGGTTCTTG</canonical>
            <polymorphic>GAAAATTCCATTCTTCAAGTTTTTTCCTCTCTCACCCTTATCAGTAGTCCCCGTATTCTTTTTTCTATTTCTTACTATCTTTTTTTGTTGGCTCCAATACTTCAATCACCTGACCTGATTGATCGTCTCCAGAAACAAAACATTTCCTCTTTTTAAAAATTTTTTGAACACTTTAAGATGCTCTCCCCTCCAAGAGGATTATATGGCAATAGATTAGGAGTTGTAAGTTATAACACATTGAATTTTGCACGTTTTTTGTTTGTTGACAGTTGAGAAAAATTCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACMAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACAATCTGTTTACTTTATCAGGTGTTAACCAAATAATATCGAAACTGCAAAATTCAAATATTTGAAGAATTTTTTATATGCTGAGAAATTCAGTTTTATTTAGAAATATTGGTGGTTAGTGGATTACTGTAGTTTTGAAAAAAAACTTTAAATTTAAAATTGTGATTCAAACTTCTCCATCGATCGGAAATTTCGATTTTTGAATTTCCGAGTTTTCAAAAACTATGAAACCTGTAATAGAAAGACCCCTAATTTTTTACTTCGGGCTAATTTATCTCGGTTCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGGGATACTGTATTTGTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTGCTGGAAAATATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>TCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACA</canonical_amplicon>
		<polymorphic_amplicon>TCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACMAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27517</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>558934</contig_pos>
        <strand></strand>
        <context>mmaaaaaaaa[T/A]tttaaaaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAA</left_flank>
        <right_flank>TTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCTTCAAGTTTTTTCCTCTCTCACCCTTATCAGTAGTCCCCGTATTCTTTTTTCTATTTCTTACTATCTTTTTTTGTTGGCTCCAATACTTCAATCACCTGACCTGATTGATCGTCTCCAGAAACAAAACATTTCCTCTTTTTAAAAATTTTTTGAACACTTTAAGATGCTCTCCCCTCCAAGAGGATTATATGGCAATAGATTAGGAGTTGTAAGTTATAACACATTGAATTTTGCACGTTTTTTGTTTGTTGACAGTTGAGAAAAATTCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACAATCTGTTTACTTTATCAGGTGTTAACCAAATAATATCGAAACTGCAAAATTCAAATATTTGAAGAATTTTTTATATGCTGAGAAATTCAGTTTTATTTAGAAATATTGGTGGTTAGTGGATTACTGTAGTTTTGAAAAAAAACTTTAAATTTAAAATTGTGATTCAAACTTCTCCATCGATCGGAAATTTCGATTTTTGAATTTCCGAGTTTTCAAAAACTATGAAACCTGTAATAGAAAGACCCCTAATTTTTTACTTCGGGCTAATTTATCTCGGTTCTTGTCAGAGATA</canonical>
            <polymorphic>ATTCTTCAAGTTTTTTCCTCTCTCACCCTTATCAGTAGTCCCCGTATTCTTTTTTCTATTTCTTACTATCTTTTTTTGTTGGCTCCAATACTTCAATCACCTGACCTGATTGATCGTCTCCAGAAACAAAACATTTCCTCTTTTTAAAAATTTTTTGAACACTTTAAGATGCTCTCCCCTCCAAGAGGATTATATGGCAATAGATTAGGAGTTGTAAGTTATAACACATTGAATTTTGCACGTTTTTTGTTTGTTGACAGTTGAGAAAAATTCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAAWTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACAATCTGTTTACTTTATCAGGTGTTAACCAAATAATATCGAAACTGCAAAATTCAAATATTTGAAGAATTTTTTATATGCTGAGAAATTCAGTTTTATTTAGAAATATTGGTGGTTAGTGGATTACTGTAGTTTTGAAAAAAAACTTTAAATTTAAAATTGTGATTCAAACTTCTCCATCGATCGGAAATTTCGATTTTTGAATTTCCGAGTTTTCAAAAACTATGAAACCTGTAATAGAAAGACCCCTAATTTTTTACTTCGGGCTAATTTATCTCGGTTCTTGTCAGAGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>258 148 141 93 83 64 38 37 32 22 19 18 17 16 14</canonical_bands>
                <polymorphic_bands>290 148 141 93 83 64 38 37 22 19 18 17 16 14</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>148 127 121 110 83 64 48 37 31 27 22 22 21 20 19 18 18 17 14 10 9 7 7</canonical_bands>
                <polymorphic_bands>148 127 121 110 83 64 48 43 37 31 27 22 20 19 18 18 17 14 10 9 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGGGATACTGTATTTGTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTGCTGGAAAATATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>TCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACA</canonical_amplicon>
		<polymorphic_amplicon>TCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAAWTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27518</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>558946</contig_pos>
        <strand></strand>
        <context>ttaaaaaaaa[A/C]SGGaaaaatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAA</left_flank>
        <right_flank>CGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAAT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCCTCTCTCACCCTTATCAGTAGTCCCCGTATTCTTTTTTCTATTTCTTACTATCTTTTTTTGTTGGCTCCAATACTTCAATCACCTGACCTGATTGATCGTCTCCAGAAACAAAACATTTCCTCTTTTTAAAAATTTTTTGAACACTTTAAGATGCTCTCCCCTCCAAGAGGATTATATGGCAATAGATTAGGAGTTGTAAGTTATAACACATTGAATTTTGCACGTTTTTTGTTTGTTGACAGTTGAGAAAAATTCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACAATCTGTTTACTTTATCAGGTGTTAACCAAATAATATCGAAACTGCAAAATTCAAATATTTGAAGAATTTTTTATATGCTGAGAAATTCAGTTTTATTTAGAAATATTGGTGGTTAGTGGATTACTGTAGTTTTGAAAAAAAACTTTAAATTTAAAATTGTGATTCAAACTTCTCCATCGATCGGAAATTTCGATTTTTGAATTTCCGAGTTTTCAAAAACTATGAAACCTGTAATAGAAAGACCCCTAATTTTTTACTTCGGGCTAATTTATCTCGGTTCTTGTCAGAGATATTGAAAAGTTGT</canonical>
            <polymorphic>TTTTCCTCTCTCACCCTTATCAGTAGTCCCCGTATTCTTTTTTCTATTTCTTACTATCTTTTTTTGTTGGCTCCAATACTTCAATCACCTGACCTGATTGATCGTCTCCAGAAACAAAACATTTCCTCTTTTTAAAAATTTTTTGAACACTTTAAGATGCTCTCCCCTCCAAGAGGATTATATGGCAATAGATTAGGAGTTGTAAGTTATAACACATTGAATTTTGCACGTTTTTTGTTTGTTGACAGTTGAGAAAAATTCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAMCGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACAATCTGTTTACTTTATCAGGTGTTAACCAAATAATATCGAAACTGCAAAATTCAAATATTTGAAGAATTTTTTATATGCTGAGAAATTCAGTTTTATTTAGAAATATTGGTGGTTAGTGGATTACTGTAGTTTTGAAAAAAAACTTTAAATTTAAAATTGTGATTCAAACTTCTCCATCGATCGGAAATTTCGATTTTTGAATTTCCGAGTTTTCAAAAACTATGAAACCTGTAATAGAAAGACCCCTAATTTTTTACTTCGGGCTAATTTATCTCGGTTCTTGTCAGAGATATTGAAAAGTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGGGATACTGTATTTGTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTGCTGGAAAATATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>TCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACA</canonical_amplicon>
		<polymorphic_amplicon>TCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAMCGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27519</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>558947</contig_pos>
        <strand></strand>
        <context>taaaaaaaaM[C/G]GGaaaaatta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAA</left_flank>
        <right_flank>GGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCTCTCTCACCCTTATCAGTAGTCCCCGTATTCTTTTTTCTATTTCTTACTATCTTTTTTTGTTGGCTCCAATACTTCAATCACCTGACCTGATTGATCGTCTCCAGAAACAAAACATTTCCTCTTTTTAAAAATTTTTTGAACACTTTAAGATGCTCTCCCCTCCAAGAGGATTATATGGCAATAGATTAGGAGTTGTAAGTTATAACACATTGAATTTTGCACGTTTTTTGTTTGTTGACAGTTGAGAAAAATTCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACAATCTGTTTACTTTATCAGGTGTTAACCAAATAATATCGAAACTGCAAAATTCAAATATTTGAAGAATTTTTTATATGCTGAGAAATTCAGTTTTATTTAGAAATATTGGTGGTTAGTGGATTACTGTAGTTTTGAAAAAAAACTTTAAATTTAAAATTGTGATTCAAACTTCTCCATCGATCGGAAATTTCGATTTTTGAATTTCCGAGTTTTCAAAAACTATGAAACCTGTAATAGAAAGACCCCTAATTTTTTACTTCGGGCTAATTTATCTCGGTTCTTGTCAGAGATATTGAAAAGTTGTC</canonical>
            <polymorphic>TTTCCTCTCTCACCCTTATCAGTAGTCCCCGTATTCTTTTTTCTATTTCTTACTATCTTTTTTTGTTGGCTCCAATACTTCAATCACCTGACCTGATTGATCGTCTCCAGAAACAAAACATTTCCTCTTTTTAAAAATTTTTTGAACACTTTAAGATGCTCTCCCCTCCAAGAGGATTATATGGCAATAGATTAGGAGTTGTAAGTTATAACACATTGAATTTTGCACGTTTTTTGTTTGTTGACAGTTGAGAAAAATTCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAASGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACAATCTGTTTACTTTATCAGGTGTTAACCAAATAATATCGAAACTGCAAAATTCAAATATTTGAAGAATTTTTTATATGCTGAGAAATTCAGTTTTATTTAGAAATATTGGTGGTTAGTGGATTACTGTAGTTTTGAAAAAAAACTTTAAATTTAAAATTGTGATTCAAACTTCTCCATCGATCGGAAATTTCGATTTTTGAATTTCCGAGTTTTCAAAAACTATGAAACCTGTAATAGAAAGACCCCTAATTTTTTACTTCGGGCTAATTTATCTCGGTTCTTGTCAGAGATATTGAAAAGTTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGGGATACTGTATTTGTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTGCTGGAAAATATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>TCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAACGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACA</canonical_amplicon>
		<polymorphic_amplicon>TCTGGGATACTGTATTTGTGTTTAAAGGGTCCCACACTGAAGGTCCCACAACGACAACTGCAGTAACCTAAAACAACTATTTTCCGGATGTTTTCTTGATTTTCGTGCGCTTTAAGTCAATTTTTTTCACTTAAAAAAAATTTCAGATTTAAAAAAAATTCCGATTTTTTTAAATGGAAATTTCTGTAATTAAAAATTCGAAAAAATTAAGAAAAAAACAAAAAAAAATTTTAAAAAAAAASGGAAAAATTATTTTCATAGTGGAAAAAGTGACTGAAAACGCACGAGAATAGAGAAAATAAAGCCGGGATAGGAAAATATTTTAGGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCGCGGTCGCAGCTCCAATTTGTTCTGTACCAGAATAACATTTTAAAAAAACATTGCTATGAATATTTTCCAGCAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27520</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>560139</contig_pos>
        <strand></strand>
        <context>ttagttaaca[C/A]atttttgata</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CAACTGATAAAATGTTTTTCATATTATCACCAACATTTTATTAGTTAACA</left_flank>
        <right_flank>ATTTTTGATATCTATTCTCGGAACCGAGATAATTGAGCTCAAATCGCACG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCTCCAAACAAATTTTCCAGAATTTTTATGTTCTATTTTGTGTCTAGAACCTCCACAATTCAACTGATAACAACCCCATCATCCTATACCCTCAAACAATCAATTCTCGATTTCTCCGAAAATTTCCAAATCATTCCCTCTTATCATTTTTCAATGTTTCTCCGGCTTCTACGTCATCGATTTTGTGAAGGTTTCCTAATAAATTTTTCTATTTTTTCCAGAAAAAAACTATACATTTTTTGGATTCAAATTCCAAAAAAATGTACGTTGGGCGAGCCCTTCAGAAGGCCAGTCTACTGACGGACCTGGATAAGGCAATACCCTCAACATCATCATTTTTGGATTGGATTTGTAAGTTTTGAAATTTCGAATTACCGTAAAACCTGCATAGGGTCCCCTAGTTTGAGCTCAATTATCTCGGCTTCTATAAGAGATATCACAAATGTGTCAACTGATAAAATGTTTTTCATATTATCACCAACATTTTATTAGTTAACACATTTTTGATATCTATTCTCGGAACCGAGATAATTGAGCTCAAATCGCACGGACAGGGTAGGTTTCTATTAGAGAAAATACGGTAATTAGAATACCTAATTAACGCTTTTTTTAGTATCACCACCATATGAAAATGAGACTGGAGAACACAATTCGACAGATGTATTGTGTGCGAATTGTATTGGTCAGAAAAATGTGATTGGTGAGTTCTCCTTAATGTTTTTAGAGGGACATAAGGCTCTGGAATTGGAAAAATGAGTTTTTTCACCCAACTGTCAAATTTAAGGTTAATTATCTCGGTTCCTATGATATATATTAAAAATCTGTCAGCTGATAAATTGTTAATCATAATATCATCAGTATTTTATTAATTGACAAAGTTTTGATATCTTTCACAGAAATCTAGATAATTGAGCTCAAAATTGACGGTTTCGGTGAGCTGCATTAGGGGAAATACGGTATCTGAAATTTTGAAAATTTCAGCATGCGTTCGTTCAAGTG</canonical>
            <polymorphic>CCCTCCAAACAAATTTTCCAGAATTTTTATGTTCTATTTTGTGTCTAGAACCTCCACAATTCAACTGATAACAACCCCATCATCCTATACCCTCAAACAATCAATTCTCGATTTCTCCGAAAATTTCCAAATCATTCCCTCTTATCATTTTTCAATGTTTCTCCGGCTTCTACGTCATCGATTTTGTGAAGGTTTCCTAATAAATTTTTCTATTTTTTCCAGAAAAAAACTATACATTTTTTGGATTCAAATTCCAAAAAAATGTACGTTGGGCGAGCCCTTCAGAAGGCCAGTCTACTGACGGACCTGGATAAGGCAATACCCTCAACATCATCATTTTTGGATTGGATTTGTAAGTTTTGAAATTTCGAATTACCGTAAAACCTGCATAGGGTCCCCTAGTTTGAGCTCAATTATCTCGGCTTCTATAAGAGATATCACAAATGTGTCAACTGATAAAATGTTTTTCATATTATCACCAACATTTTATTAGTTAACAMATTTTTGATATCTATTCTCGGAACCGAGATAATTGAGCTCAAATCGCACGGACAGGGTAGGTTTCTATTAGAGAAAATACGGTAATTAGAATACCTAATTAACGCTTTTTTTAGTATCACCACCATATGAAAATGAGACTGGAGAACACAATTCGACAGATGTATTGTGTGCGAATTGTATTGGTCAGAAAAATGTGATTGGTGAGTTCTCCTTAATGTTTTTAGAGGGACATAAGGCTCTGGAATTGGAAAAATGAGTTTTTTCACCCAACTGTCAAATTTAAGGTTAATTATCTCGGTTCCTATGATATATATTAAAAATCTGTCAGCTGATAAATTGTTAATCATAATATCATCAGTATTTTATTAATTGACAAAGTTTTGATATCTTTCACAGAAATCTAGATAATTGAGCTCAAAATTGACGGTTTCGGTGAGCTGCATTAGGGGAAATACGGTATCTGAAATTTTGAAAATTTCAGCATGCGTTCGTTCAAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>252 132 128 71 64 62 49 43 42 30 26 26 21 21 13 8 7 3 2 0</canonical_bands>
                <polymorphic_bands>252 132 128 71 70 64 62 43 42 30 26 26 21 13 8 7 3 2 0</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTGGATTTGTAAGTTTTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTCATATGGTGGTGATACTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>GGATTGGATTTGTAAGTTTTGAAATTTCGAATTACCGTAAAACCTGCATAGGGTCCCCTAGTTTGAGCTCAATTATCTCGGCTTCTATAAGAGATATCACAAATGTGTCAACTGATAAAATGTTTTTCATATTATCACCAACATTTTATTAGTTAACACATTTTTGATATCTATTCTCGGAACCGAGATAATTGAGCTCAAATCGCACGGACAGGGTAGGTTTCTATTAGAGAAAATACGGTAATTAGAATACCTAATTAACGCTTTTTTTAGTATCACCACCATATGAAA</canonical_amplicon>
		<polymorphic_amplicon>GGATTGGATTTGTAAGTTTTGAAATTTCGAATTACCGTAAAACCTGCATAGGGTCCCCTAGTTTGAGCTCAATTATCTCGGCTTCTATAAGAGATATCACAAATGTGTCAACTGATAAAATGTTTTTCATATTATCACCAACATTTTATTAGTTAACAMATTTTTGATATCTATTCTCGGAACCGAGATAATTGAGCTCAAATCGCACGGACAGGGTAGGTTTCTATTAGAGAAAATACGGTAATTAGAATACCTAATTAACGCTTTTTTTAGTATCACCACCATATGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27521</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>560188</contig_pos>
        <strand></strand>
        <context>tcaaatcgca[C/G]ggacagggtr</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACATTTTTGATATCTATTCTCGGAACCGAGATAATTGAGCTCAAATCGCA</left_flank>
        <right_flank>GGACAGGGTAGGTTTCTATTAGAGAAAATACGGTAATTAGAATACCTAAT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTCCACAATTCAACTGATAACAACCCCATCATCCTATACCCTCAAACAATCAATTCTCGATTTCTCCGAAAATTTCCAAATCATTCCCTCTTATCATTTTTCAATGTTTCTCCGGCTTCTACGTCATCGATTTTGTGAAGGTTTCCTAATAAATTTTTCTATTTTTTCCAGAAAAAAACTATACATTTTTTGGATTCAAATTCCAAAAAAATGTACGTTGGGCGAGCCCTTCAGAAGGCCAGTCTACTGACGGACCTGGATAAGGCAATACCCTCAACATCATCATTTTTGGATTGGATTTGTAAGTTTTGAAATTTCGAATTACCGTAAAACCTGCATAGGGTCCCCTAGTTTGAGCTCAATTATCTCGGCTTCTATAAGAGATATCACAAATGTGTCAACTGATAAAATGTTTTTCATATTATCACCAACATTTTATTAGTTAACACATTTTTGATATCTATTCTCGGAACCGAGATAATTGAGCTCAAATCGCACGGACAGGGTAGGTTTCTATTAGAGAAAATACGGTAATTAGAATACCTAATTAACGCTTTTTTTAGTATCACCACCATATGAAAATGAGACTGGAGAACACAATTCGACAGATGTATTGTGTGCGAATTGTATTGGTCAGAAAAATGTGATTGGTGAGTTCTCCTTAATGTTTTTAGAGGGACATAAGGCTCTGGAATTGGAAAAATGAGTTTTTTCACCCAACTGTCAAATTTAAGGTTAATTATCTCGGTTCCTATGATATATATTAAAAATCTGTCAGCTGATAAATTGTTAATCATAATATCATCAGTATTTTATTAATTGACAAAGTTTTGATATCTTTCACAGAAATCTAGATAATTGAGCTCAAAATTGACGGTTTCGGTGAGCTGCATTAGGGGAAATACGGTATCTGAAATTTTGAAAATTTCAGCATGCGTTCGTTCAAGTGTTATAGCTGTTCTGGGTCTGTGTACGGCTGCAATGTGCATGGCACGAAT</canonical>
            <polymorphic>ACCTCCACAATTCAACTGATAACAACCCCATCATCCTATACCCTCAAACAATCAATTCTCGATTTCTCCGAAAATTTCCAAATCATTCCCTCTTATCATTTTTCAATGTTTCTCCGGCTTCTACGTCATCGATTTTGTGAAGGTTTCCTAATAAATTTTTCTATTTTTTCCAGAAAAAAACTATACATTTTTTGGATTCAAATTCCAAAAAAATGTACGTTGGGCGAGCCCTTCAGAAGGCCAGTCTACTGACGGACCTGGATAAGGCAATACCCTCAACATCATCATTTTTGGATTGGATTTGTAAGTTTTGAAATTTCGAATTACCGTAAAACCTGCATAGGGTCCCCTAGTTTGAGCTCAATTATCTCGGCTTCTATAAGAGATATCACAAATGTGTCAACTGATAAAATGTTTTTCATATTATCACCAACATTTTATTAGTTAACACATTTTTGATATCTATTCTCGGAACCGAGATAATTGAGCTCAAATCGCASGGACAGGGTAGGTTTCTATTAGAGAAAATACGGTAATTAGAATACCTAATTAACGCTTTTTTTAGTATCACCACCATATGAAAATGAGACTGGAGAACACAATTCGACAGATGTATTGTGTGCGAATTGTATTGGTCAGAAAAATGTGATTGGTGAGTTCTCCTTAATGTTTTTAGAGGGACATAAGGCTCTGGAATTGGAAAAATGAGTTTTTTCACCCAACTGTCAAATTTAAGGTTAATTATCTCGGTTCCTATGATATATATTAAAAATCTGTCAGCTGATAAATTGTTAATCATAATATCATCAGTATTTTATTAATTGACAAAGTTTTGATATCTTTCACAGAAATCTAGATAATTGAGCTCAAAATTGACGGTTTCGGTGAGCTGCATTAGGGGAAATACGGTATCTGAAATTTTGAAAATTTCAGCATGCGTTCGTTCAAGTGTTATAGCTGTTCTGGGTCTGTGTACGGCTGCAATGTGCATGGCACGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>252 132 128 71 64 62 49 42 30 26 26 22 21 21 15 8 7 7 7 5 3 2</canonical_bands>
                <polymorphic_bands>252 132 128 120 64 62 42 30 26 26 22 21 21 15 8 7 7 7 5 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTGGATTTGTAAGTTTTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTCATATGGTGGTGATACTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>GGATTGGATTTGTAAGTTTTGAAATTTCGAATTACCGTAAAACCTGCATAGGGTCCCCTAGTTTGAGCTCAATTATCTCGGCTTCTATAAGAGATATCACAAATGTGTCAACTGATAAAATGTTTTTCATATTATCACCAACATTTTATTAGTTAACACATTTTTGATATCTATTCTCGGAACCGAGATAATTGAGCTCAAATCGCACGGACAGGGTAGGTTTCTATTAGAGAAAATACGGTAATTAGAATACCTAATTAACGCTTTTTTTAGTATCACCACCATATGAAA</canonical_amplicon>
		<polymorphic_amplicon>GGATTGGATTTGTAAGTTTTGAAATTTCGAATTACCGTAAAACCTGCATAGGGTCCCCTAGTTTGAGCTCAATTATCTCGGCTTCTATAAGAGATATCACAAATGTGTCAACTGATAAAATGTTTTTCATATTATCACCAACATTTTATTAGTTAACACATTTTTGATATCTATTCTCGGAACCGAGATAATTGAGCTCAAATCGCASGGACAGGGTAGGTTTCTATTAGAGAAAATACGGTAATTAGAATACCTAATTAACGCTTTTTTTAGTATCACCACCATATGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27522</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>560198</contig_pos>
        <strand></strand>
        <context>sggacagggt[A/G]ggtttctatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATCTATTCTCGGAACCGAGATAATTGAGCTCAAATCGCACGGACAGGGT</left_flank>
        <right_flank>GGTTTCTATTAGAGAAAATACGGTAATTAGAATACCTAATTAACGCTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAACTGATAACAACCCCATCATCCTATACCCTCAAACAATCAATTCTCGATTTCTCCGAAAATTTCCAAATCATTCCCTCTTATCATTTTTCAATGTTTCTCCGGCTTCTACGTCATCGATTTTGTGAAGGTTTCCTAATAAATTTTTCTATTTTTTCCAGAAAAAAACTATACATTTTTTGGATTCAAATTCCAAAAAAATGTACGTTGGGCGAGCCCTTCAGAAGGCCAGTCTACTGACGGACCTGGATAAGGCAATACCCTCAACATCATCATTTTTGGATTGGATTTGTAAGTTTTGAAATTTCGAATTACCGTAAAACCTGCATAGGGTCCCCTAGTTTGAGCTCAATTATCTCGGCTTCTATAAGAGATATCACAAATGTGTCAACTGATAAAATGTTTTTCATATTATCACCAACATTTTATTAGTTAACACATTTTTGATATCTATTCTCGGAACCGAGATAATTGAGCTCAAATCGCACGGACAGGGTAGGTTTCTATTAGAGAAAATACGGTAATTAGAATACCTAATTAACGCTTTTTTTAGTATCACCACCATATGAAAATGAGACTGGAGAACACAATTCGACAGATGTATTGTGTGCGAATTGTATTGGTCAGAAAAATGTGATTGGTGAGTTCTCCTTAATGTTTTTAGAGGGACATAAGGCTCTGGAATTGGAAAAATGAGTTTTTTCACCCAACTGTCAAATTTAAGGTTAATTATCTCGGTTCCTATGATATATATTAAAAATCTGTCAGCTGATAAATTGTTAATCATAATATCATCAGTATTTTATTAATTGACAAAGTTTTGATATCTTTCACAGAAATCTAGATAATTGAGCTCAAAATTGACGGTTTCGGTGAGCTGCATTAGGGGAAATACGGTATCTGAAATTTTGAAAATTTCAGCATGCGTTCGTTCAAGTGTTATAGCTGTTCTGGGTCTGTGTACGGCTGCAATGTGCATGGCACGAATCGCAAAACTC</canonical>
            <polymorphic>TTCAACTGATAACAACCCCATCATCCTATACCCTCAAACAATCAATTCTCGATTTCTCCGAAAATTTCCAAATCATTCCCTCTTATCATTTTTCAATGTTTCTCCGGCTTCTACGTCATCGATTTTGTGAAGGTTTCCTAATAAATTTTTCTATTTTTTCCAGAAAAAAACTATACATTTTTTGGATTCAAATTCCAAAAAAATGTACGTTGGGCGAGCCCTTCAGAAGGCCAGTCTACTGACGGACCTGGATAAGGCAATACCCTCAACATCATCATTTTTGGATTGGATTTGTAAGTTTTGAAATTTCGAATTACCGTAAAACCTGCATAGGGTCCCCTAGTTTGAGCTCAATTATCTCGGCTTCTATAAGAGATATCACAAATGTGTCAACTGATAAAATGTTTTTCATATTATCACCAACATTTTATTAGTTAACACATTTTTGATATCTATTCTCGGAACCGAGATAATTGAGCTCAAATCGCACGGACAGGGTRGGTTTCTATTAGAGAAAATACGGTAATTAGAATACCTAATTAACGCTTTTTTTAGTATCACCACCATATGAAAATGAGACTGGAGAACACAATTCGACAGATGTATTGTGTGCGAATTGTATTGGTCAGAAAAATGTGATTGGTGAGTTCTCCTTAATGTTTTTAGAGGGACATAAGGCTCTGGAATTGGAAAAATGAGTTTTTTCACCCAACTGTCAAATTTAAGGTTAATTATCTCGGTTCCTATGATATATATTAAAAATCTGTCAGCTGATAAATTGTTAATCATAATATCATCAGTATTTTATTAATTGACAAAGTTTTGATATCTTTCACAGAAATCTAGATAATTGAGCTCAAAATTGACGGTTTCGGTGAGCTGCATTAGGGGAAATACGGTATCTGAAATTTTGAAAATTTCAGCATGCGTTCGTTCAAGTGTTATAGCTGTTCTGGGTCTGTGTACGGCTGCAATGTGCATGGCACGAATCGCAAAACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTGGATTTGTAAGTTTTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTCATATGGTGGTGATACTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>GGATTGGATTTGTAAGTTTTGAAATTTCGAATTACCGTAAAACCTGCATAGGGTCCCCTAGTTTGAGCTCAATTATCTCGGCTTCTATAAGAGATATCACAAATGTGTCAACTGATAAAATGTTTTTCATATTATCACCAACATTTTATTAGTTAACACATTTTTGATATCTATTCTCGGAACCGAGATAATTGAGCTCAAATCGCACGGACAGGGTAGGTTTCTATTAGAGAAAATACGGTAATTAGAATACCTAATTAACGCTTTTTTTAGTATCACCACCATATGAAA</canonical_amplicon>
		<polymorphic_amplicon>GGATTGGATTTGTAAGTTTTGAAATTTCGAATTACCGTAAAACCTGCATAGGGTCCCCTAGTTTGAGCTCAATTATCTCGGCTTCTATAAGAGATATCACAAATGTGTCAACTGATAAAATGTTTTTCATATTATCACCAACATTTTATTAGTTAACACATTTTTGATATCTATTCTCGGAACCGAGATAATTGAGCTCAAATCGCACGGACAGGGTRGGTTTCTATTAGAGAAAATACGGTAATTAGAATACCTAATTAACGCTTTTTTTAGTATCACCACCATATGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27523</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>560448</contig_pos>
        <strand></strand>
        <context>gttcctatga[T/G]atatattaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTTTTTCACCCAACTGTCAAATTTAAGGTTAATTATCTCGGTTCCTATGA</left_flank>
        <right_flank>ATATATTAAAAATCTGTCAGCTGATAAATTGTTAATCATAATATCATCAG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAAGGCAATACCCTCAACATCATCATTTTTGGATTGGATTTGTAAGTTTTGAAATTTCGAATTACCGTAAAACCTGCATAGGGTCCCCTAGTTTGAGCTCAATTATCTCGGCTTCTATAAGAGATATCACAAATGTGTCAACTGATAAAATGTTTTTCATATTATCACCAACATTTTATTAGTTAACACATTTTTGATATCTATTCTCGGAACCGAGATAATTGAGCTCAAATCGCACGGACAGGGTAGGTTTCTATTAGAGAAAATACGGTAATTAGAATACCTAATTAACGCTTTTTTTAGTATCACCACCATATGAAAATGAGACTGGAGAACACAATTCGACAGATGTATTGTGTGCGAATTGTATTGGTCAGAAAAATGTGATTGGTGAGTTCTCCTTAATGTTTTTAGAGGGACATAAGGCTCTGGAATTGGAAAAATGAGTTTTTTCACCCAACTGTCAAATTTAAGGTTAATTATCTCGGTTCCTATGATATATATTAAAAATCTGTCAGCTGATAAATTGTTAATCATAATATCATCAGTATTTTATTAATTGACAAAGTTTTGATATCTTTCACAGAAATCTAGATAATTGAGCTCAAAATTGACGGTTTCGGTGAGCTGCATTAGGGGAAATACGGTATCTGAAATTTTGAAAATTTCAGCATGCGTTCGTTCAAGTGTTATAGCTGTTCTGGGTCTGTGTACGGCTGCAATGTGCATGGCACGAATCGCAAAACTCCATGCCACGTCACAGTCACAATTGATGCTCCTTCTCTATTATATTCTGGCAGTTCATTGTTTTGGAGGGTGAGTCAACGGTTTGAGCTGATTATCTCGGTTCCTAAAAGAGCTATCATAAATTAGTCAACTGATAAAATATGAATCATATTATGAAAAATAATTTATTAGTTGACAAGATTTTGGCACCTCTTAAATGAACCGAGATATTTGTAGTCAAAGGAACAATCCTCAAACACTAAAATTGAATG</canonical>
            <polymorphic>GATAAGGCAATACCCTCAACATCATCATTTTTGGATTGGATTTGTAAGTTTTGAAATTTCGAATTACCGTAAAACCTGCATAGGGTCCCCTAGTTTGAGCTCAATTATCTCGGCTTCTATAAGAGATATCACAAATGTGTCAACTGATAAAATGTTTTTCATATTATCACCAACATTTTATTAGTTAACACATTTTTGATATCTATTCTCGGAACCGAGATAATTGAGCTCAAATCGCACGGACAGGGTAGGTTTCTATTAGAGAAAATACGGTAATTAGAATACCTAATTAACGCTTTTTTTAGTATCACCACCATATGAAAATGAGACTGGAGAACACAATTCGACAGATGTATTGTGTGCGAATTGTATTGGTCAGAAAAATGTGATTGGTGAGTTCTCCTTAATGTTTTTAGAGGGACATAAGGCTCTGGAATTGGAAAAATGAGTTTTTTCACCCAACTGTCAAATTTAAGGTTAATTATCTCGGTTCCTATGAKATATATTAAAAATCTGTCAGCTGATAAATTGTTAATCATAATATCATCAGTATTTTATTAATTGACAAAGTTTTGATATCTTTCACAGAAATCTAGATAATTGAGCTCAAAATTGACGGTTTCGGTGAGCTGCATTAGGGGAAATACGGTATCTGAAATTTTGAAAATTTCAGCATGCGTTCGTTCAAGTGTTATAGCTGTTCTGGGTCTGTGTACGGCTGCAATGTGCATGGCACGAATCGCAAAACTCCATGCCACGTCACAGTCACAATTGATGCTCCTTCTCTATTATATTCTGGCAGTTCATTGTTTTGGAGGGTGAGTCAACGGTTTGAGCTGATTATCTCGGTTCCTAAAAGAGCTATCATAAATTAGTCAACTGATAAAATATGAATCATATTATGAAAAATAATTTATTAGTTGACAAGATTTTGGCACCTCTTAAATGAACCGAGATATTTGTAGTCAAAGGAACAATCCTCAAACACTAAAATTGAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGGAATTGGAAAAATGAGTT</pcr_primer_p1>
		<pcr_primer_p2>CCAGAACAGCTATAACACTTGA</pcr_primer_p2>
		<pcr_amplicon_size>276</pcr_amplicon_size>
		<canonical_amplicon>CTGGAATTGGAAAAATGAGTTTTTTCACCCAACTGTCAAATTTAAGGTTAATTATCTCGGTTCCTATGATATATATTAAAAATCTGTCAGCTGATAAATTGTTAATCATAATATCATCAGTATTTTATTAATTGACAAAGTTTTGATATCTTTCACAGAAATCTAGATAATTGAGCTCAAAATTGACGGTTTCGGTGAGCTGCATTAGGGGAAATACGGTATCTGAAATTTTGAAAATTTCAGCATGCGTTCGTTCAAGTGTTATAGCTGTTCTGG</canonical_amplicon>
		<polymorphic_amplicon>CTGGAATTGGAAAAATGAGTTTTTTCACCCAACTGTCAAATTTAAGGTTAATTATCTCGGTTCCTATGAKATATATTAAAAATCTGTCAGCTGATAAATTGTTAATCATAATATCATCAGTATTTTATTAATTGACAAAGTTTTGATATCTTTCACAGAAATCTAGATAATTGAGCTCAAAATTGACGGTTTCGGTGAGCTGCATTAGGGGAAATACGGTATCTGAAATTTTGAAAATTTCAGCATGCGTTCGTTCAAGTGTTATAGCTGTTCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27524</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>560479</contig_pos>
        <strand></strand>
        <context>ctgataaatt[G/T]ttaatcataa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTATCTCGGTTCCTATGATATATATTAAAAATCTGTCAGCTGATAAATT</left_flank>
        <right_flank>TTAATCATAATATCATCAGTATTTTATTAATTGACAAAGTTTTGATATCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGATTGGATTTGTAAGTTTTGAAATTTCGAATTACCGTAAAACCTGCATAGGGTCCCCTAGTTTGAGCTCAATTATCTCGGCTTCTATAAGAGATATCACAAATGTGTCAACTGATAAAATGTTTTTCATATTATCACCAACATTTTATTAGTTAACACATTTTTGATATCTATTCTCGGAACCGAGATAATTGAGCTCAAATCGCACGGACAGGGTAGGTTTCTATTAGAGAAAATACGGTAATTAGAATACCTAATTAACGCTTTTTTTAGTATCACCACCATATGAAAATGAGACTGGAGAACACAATTCGACAGATGTATTGTGTGCGAATTGTATTGGTCAGAAAAATGTGATTGGTGAGTTCTCCTTAATGTTTTTAGAGGGACATAAGGCTCTGGAATTGGAAAAATGAGTTTTTTCACCCAACTGTCAAATTTAAGGTTAATTATCTCGGTTCCTATGATATATATTAAAAATCTGTCAGCTGATAAATTGTTAATCATAATATCATCAGTATTTTATTAATTGACAAAGTTTTGATATCTTTCACAGAAATCTAGATAATTGAGCTCAAAATTGACGGTTTCGGTGAGCTGCATTAGGGGAAATACGGTATCTGAAATTTTGAAAATTTCAGCATGCGTTCGTTCAAGTGTTATAGCTGTTCTGGGTCTGTGTACGGCTGCAATGTGCATGGCACGAATCGCAAAACTCCATGCCACGTCACAGTCACAATTGATGCTCCTTCTCTATTATATTCTGGCAGTTCATTGTTTTGGAGGGTGAGTCAACGGTTTGAGCTGATTATCTCGGTTCCTAAAAGAGCTATCATAAATTAGTCAACTGATAAAATATGAATCATATTATGAAAAATAATTTATTAGTTGACAAGATTTTGGCACCTCTTAAATGAACCGAGATATTTGTAGTCAAAGGAACAATCCTCAAACACTAAAATTGAATGACCCCACTATTGATTTTGAGCCAATTTATCT</canonical>
            <polymorphic>TGGATTGGATTTGTAAGTTTTGAAATTTCGAATTACCGTAAAACCTGCATAGGGTCCCCTAGTTTGAGCTCAATTATCTCGGCTTCTATAAGAGATATCACAAATGTGTCAACTGATAAAATGTTTTTCATATTATCACCAACATTTTATTAGTTAACACATTTTTGATATCTATTCTCGGAACCGAGATAATTGAGCTCAAATCGCACGGACAGGGTAGGTTTCTATTAGAGAAAATACGGTAATTAGAATACCTAATTAACGCTTTTTTTAGTATCACCACCATATGAAAATGAGACTGGAGAACACAATTCGACAGATGTATTGTGTGCGAATTGTATTGGTCAGAAAAATGTGATTGGTGAGTTCTCCTTAATGTTTTTAGAGGGACATAAGGCTCTGGAATTGGAAAAATGAGTTTTTTCACCCAACTGTCAAATTTAAGGTTAATTATCTCGGTTCCTATGATATATATTAAAAATCTGTCAGCTGATAAATTKTTAATCATAATATCATCAGTATTTTATTAATTGACAAAGTTTTGATATCTTTCACAGAAATCTAGATAATTGAGCTCAAAATTGACGGTTTCGGTGAGCTGCATTAGGGGAAATACGGTATCTGAAATTTTGAAAATTTCAGCATGCGTTCGTTCAAGTGTTATAGCTGTTCTGGGTCTGTGTACGGCTGCAATGTGCATGGCACGAATCGCAAAACTCCATGCCACGTCACAGTCACAATTGATGCTCCTTCTCTATTATATTCTGGCAGTTCATTGTTTTGGAGGGTGAGTCAACGGTTTGAGCTGATTATCTCGGTTCCTAAAAGAGCTATCATAAATTAGTCAACTGATAAAATATGAATCATATTATGAAAAATAATTTATTAGTTGACAAGATTTTGGCACCTCTTAAATGAACCGAGATATTTGTAGTCAAAGGAACAATCCTCAAACACTAAAATTGAATGACCCCACTATTGATTTTGAGCCAATTTATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGGAATTGGAAAAATGAGTT</pcr_primer_p1>
		<pcr_primer_p2>CCAGAACAGCTATAACACTTGA</pcr_primer_p2>
		<pcr_amplicon_size>276</pcr_amplicon_size>
		<canonical_amplicon>CTGGAATTGGAAAAATGAGTTTTTTCACCCAACTGTCAAATTTAAGGTTAATTATCTCGGTTCCTATGATATATATTAAAAATCTGTCAGCTGATAAATTGTTAATCATAATATCATCAGTATTTTATTAATTGACAAAGTTTTGATATCTTTCACAGAAATCTAGATAATTGAGCTCAAAATTGACGGTTTCGGTGAGCTGCATTAGGGGAAATACGGTATCTGAAATTTTGAAAATTTCAGCATGCGTTCGTTCAAGTGTTATAGCTGTTCTGG</canonical_amplicon>
		<polymorphic_amplicon>CTGGAATTGGAAAAATGAGTTTTTTCACCCAACTGTCAAATTTAAGGTTAATTATCTCGGTTCCTATGATATATATTAAAAATCTGTCAGCTGATAAATTKTTAATCATAATATCATCAGTATTTTATTAATTGACAAAGTTTTGATATCTTTCACAGAAATCTAGATAATTGAGCTCAAAATTGACGGTTTCGGTGAGCTGCATTAGGGGAAATACGGTATCTGAAATTTTGAAAATTTCAGCATGCGTTCGTTCAAGTGTTATAGCTGTTCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27525</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>560542</contig_pos>
        <strand></strand>
        <context>cacagaaatc[T/G]agataattga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TCATCAGTATTTTATTAATTGACAAAGTTTTGATATCTTTCACAGAAATC</left_flank>
        <right_flank>AGATAATTGAGCTCAAAATTGACGGTTTCGGTGAGCTGCATTAGGGGAAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAGCTCAATTATCTCGGCTTCTATAAGAGATATCACAAATGTGTCAACTGATAAAATGTTTTTCATATTATCACCAACATTTTATTAGTTAACACATTTTTGATATCTATTCTCGGAACCGAGATAATTGAGCTCAAATCGCACGGACAGGGTAGGTTTCTATTAGAGAAAATACGGTAATTAGAATACCTAATTAACGCTTTTTTTAGTATCACCACCATATGAAAATGAGACTGGAGAACACAATTCGACAGATGTATTGTGTGCGAATTGTATTGGTCAGAAAAATGTGATTGGTGAGTTCTCCTTAATGTTTTTAGAGGGACATAAGGCTCTGGAATTGGAAAAATGAGTTTTTTCACCCAACTGTCAAATTTAAGGTTAATTATCTCGGTTCCTATGATATATATTAAAAATCTGTCAGCTGATAAATTGTTAATCATAATATCATCAGTATTTTATTAATTGACAAAGTTTTGATATCTTTCACAGAAATCTAGATAATTGAGCTCAAAATTGACGGTTTCGGTGAGCTGCATTAGGGGAAATACGGTATCTGAAATTTTGAAAATTTCAGCATGCGTTCGTTCAAGTGTTATAGCTGTTCTGGGTCTGTGTACGGCTGCAATGTGCATGGCACGAATCGCAAAACTCCATGCCACGTCACAGTCACAATTGATGCTCCTTCTCTATTATATTCTGGCAGTTCATTGTTTTGGAGGGTGAGTCAACGGTTTGAGCTGATTATCTCGGTTCCTAAAAGAGCTATCATAAATTAGTCAACTGATAAAATATGAATCATATTATGAAAAATAATTTATTAGTTGACAAGATTTTGGCACCTCTTAAATGAACCGAGATATTTGTAGTCAAAGGAACAATCCTCAAACACTAAAATTGAATGACCCCACTATTGATTTTGAGCCAATTTATCTCGGTTCATATGAGAGATATCAAAAGTTTGTTCACTAATAAAATATTTCTCATATCATGACCTA</canonical>
            <polymorphic>TTGAGCTCAATTATCTCGGCTTCTATAAGAGATATCACAAATGTGTCAACTGATAAAATGTTTTTCATATTATCACCAACATTTTATTAGTTAACACATTTTTGATATCTATTCTCGGAACCGAGATAATTGAGCTCAAATCGCACGGACAGGGTAGGTTTCTATTAGAGAAAATACGGTAATTAGAATACCTAATTAACGCTTTTTTTAGTATCACCACCATATGAAAATGAGACTGGAGAACACAATTCGACAGATGTATTGTGTGCGAATTGTATTGGTCAGAAAAATGTGATTGGTGAGTTCTCCTTAATGTTTTTAGAGGGACATAAGGCTCTGGAATTGGAAAAATGAGTTTTTTCACCCAACTGTCAAATTTAAGGTTAATTATCTCGGTTCCTATGATATATATTAAAAATCTGTCAGCTGATAAATTGTTAATCATAATATCATCAGTATTTTATTAATTGACAAAGTTTTGATATCTTTCACAGAAATCKAGATAATTGAGCTCAAAATTGACGGTTTCGGTGAGCTGCATTAGGGGAAATACGGTATCTGAAATTTTGAAAATTTCAGCATGCGTTCGTTCAAGTGTTATAGCTGTTCTGGGTCTGTGTACGGCTGCAATGTGCATGGCACGAATCGCAAAACTCCATGCCACGTCACAGTCACAATTGATGCTCCTTCTCTATTATATTCTGGCAGTTCATTGTTTTGGAGGGTGAGTCAACGGTTTGAGCTGATTATCTCGGTTCCTAAAAGAGCTATCATAAATTAGTCAACTGATAAAATATGAATCATATTATGAAAAATAATTTATTAGTTGACAAGATTTTGGCACCTCTTAAATGAACCGAGATATTTGTAGTCAAAGGAACAATCCTCAAACACTAAAATTGAATGACCCCACTATTGATTTTGAGCCAATTTATCTCGGTTCATATGAGAGATATCAAAAGTTTGTTCACTAATAAAATATTTCTCATATCATGACCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGGAATTGGAAAAATGAGTT</pcr_primer_p1>
		<pcr_primer_p2>CCAGAACAGCTATAACACTTGA</pcr_primer_p2>
		<pcr_amplicon_size>276</pcr_amplicon_size>
		<canonical_amplicon>CTGGAATTGGAAAAATGAGTTTTTTCACCCAACTGTCAAATTTAAGGTTAATTATCTCGGTTCCTATGATATATATTAAAAATCTGTCAGCTGATAAATTGTTAATCATAATATCATCAGTATTTTATTAATTGACAAAGTTTTGATATCTTTCACAGAAATCTAGATAATTGAGCTCAAAATTGACGGTTTCGGTGAGCTGCATTAGGGGAAATACGGTATCTGAAATTTTGAAAATTTCAGCATGCGTTCGTTCAAGTGTTATAGCTGTTCTGG</canonical_amplicon>
		<polymorphic_amplicon>CTGGAATTGGAAAAATGAGTTTTTTCACCCAACTGTCAAATTTAAGGTTAATTATCTCGGTTCCTATGATATATATTAAAAATCTGTCAGCTGATAAATTGTTAATCATAATATCATCAGTATTTTATTAATTGACAAAGTTTTGATATCTTTCACAGAAATCKAGATAATTGAGCTCAAAATTGACGGTTTCGGTGAGCTGCATTAGGGGAAATACGGTATCTGAAATTTTGAAAATTTCAGCATGCGTTCGTTCAAGTGTTATAGCTGTTCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27526</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>563289</contig_pos>
        <strand>+</strand>
        <context>TTTGTTTCTG[C/T]CTTTTTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTTGTTCGCTTTGACCCGATTCGAACGGGTCTTCTGAATTTGTTTCTG</left_flank>
        <right_flank>CTTTTTTTTCTATTGTCCTACTATAGTAATTTAATATGTAAATAGTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACCGCTCTACAGTATACCCGAGGAGCATTTGGTAAGGATTGGAGCCTTTGAGTGTTTTTTCGGTCATAAAAGTTGATGACCTAGAAAACCCAACTTGCGAAAGTTAGGACCCAATGTTCAATTTCAAAAAAACAAATTTTTCTTAAACTTCCATGTTCCAGGGCTCCATCCCGATTCCCCAACAATCTCCACAACCCCAAATGCTTGTTGGCTCACTGGATACATTCTCTACAGTACCCCTTTTGGACTAAACCTCGGAATTCTAGAAACTTCTAGAAGTCACCATTTTTCACCTTTTTATGTATACTTTCACTTTGACCAGTTGTCTTTCTATGGCTCATTTTTTACCTTGTCTATTTTACACATTTCAAATTGTTTTCTGACAATTTTTTAAAATTAGCTCCTCCCGGTGTTTTTTGGCCTTAATTTTTCCTTTTACCTCTTTCATATTTGTTCGCTTTGACCCGATTCGAACGGGTCTTCTGAATTTGTTTCTGTCTTTTTTTTCTATTGTCCTACTATAGTAATTTAATATGTAAATAGTTTTTTTTTGGTTGTAATTTTGAGAGATGTATAAGAAGATTTTTTGAATTTTGAATTTCATAAATTTAGTTATGCTTTGTAGATGGTTCGATCTTAAAATATACAAAAAATTAATACAATTTTAAGATTTTGAGATTGTAAGGAATTGGTTGTTCAGAATGTCAACATCTTTTAGAAAAATAATTAGGGAAAAAACTTTCGGAATTCTGAAATTATAAAAAAATTAGATTTTTTGAAATCTCAGAATTTCGTGATGTCAAAATCGCAGAAAATCTCAGAATTTCGAAAATTCAGGATTTCAAAACTTCAGAATTTCAGATTCTCAGGATTTCAGCATTGTAGAATCTCAGAATCTGAATTAAACTCAAAGTGTACGTGCATGGTGGACTTCTATTAGAGCAAATACGGTAACTTATAATTTTTTCTAAATGTGAGCACTAACGGAGAATGTTGAC</canonical>
            <polymorphic>TCACCGCTCTACAGTATACCCGAGGAGCATTTGGTAAGGATTGGAGCCTTTGAGTGTTTTTTCGGTCATAAAAGTTGATGACCTAGAAAACCCAACTTGCGAAAGTTAGGACCCAATGTTCAATTTCAAAAAAACAAATTTTTCTTAAACTTCCATGTTCCAGGGCTCCATCCCGATTCCCCAACAATCTCCACAACCCCAAATGCTTGTTGGCTCACTGGATACATTCTCTACAGTACCCCTTTTGGACTAAACCTCGGAATTCTAGAAACTTCTAGAAGTCACCATTTTTCACCTTTTTATGTATACTTTCACTTTGACCAGTTGTCTTTCTATGGCTCATTTTTTACCTTGTCTATTTTACACATTTCAAATTGTTTTCTGACAATTTTTTAAAATTAGCTCCTCCCGGTGTTTTTTGGCCTTAATTTTTCCTTTTACCTCTTTCATATTTGTTCGCTTTGACCCGATTCGAACGGGTCTTCTGAATTTGTTTCTGYCTTTTTTTTCTATTGTCCTACTATAGTAATTTAATATGTAAATAGTTTTTTTTTGGTTGTAATTTTGAGAGATGTATAAGAAGATTTTTTGAATTTTGAATTTCATAAATTTAGTTATGCTTTGTAGATGGTTCGATCTTAAAATATACAAAAAATTAATACAATTTTAAGATTTTGAGATTGTAAGGAATTGGTTGTTCAGAATGTCAACATCTTTTAGAAAAATAATTAGGGAAAAAACTTTCGGAATTCTGAAATTATAAAAAAATTAGATTTTTTGAAATCTCAGAATTTCGTGATGTCAAAATCGCAGAAAATCTCAGAATTTCGAAAATTCAGGATTTCAAAACTTCAGAATTTCAGATTCTCAGGATTTCAGCATTGTAGAATCTCAGAATCTGAATTAAACTCAAAGTGTACGTGCATGGTGGACTTCTATTAGAGCAAATACGGTAACTTATAATTTTTTCTAAATGTGAGCACTAACGGAGAATGTTGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTGTCTTTCTATGGCTCATTT</pcr_primer_p1>
		<pcr_primer_p2>TCTCTCAAAATTACAACCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTTGTCTTTCTATGGCTCATTTTTTACCTTGTCTATTTTACACATTTCAAATTGTTTTCTGACAATTTTTTAAAATTAGCTCCTCCCGGTGTTTTTTGGCCTTAATTTTTCCTTTTACCTCTTTCATATTTGTTCGCTTTGACCCGATTCGAACGGGTCTTCTGAATTTGTTTCTGTCTTTTTTTTCTATTGTCCTACTATAGTAATTTAATATGTAAATAGTTTTTTTTTGGTTGTAATTTTGAGAGA</canonical_amplicon>
		<polymorphic_amplicon>AGTTGTCTTTCTATGGCTCATTTTTTACCTTGTCTATTTTACACATTTCAAATTGTTTTCTGACAATTTTTTAAAATTAGCTCCTCCCGGTGTTTTTTGGCCTTAATTTTTCCTTTTACCTCTTTCATATTTGTTCGCTTTGACCCGATTCGAACGGGTCTTCTGAATTTGTTTCTGYCTTTTTTTTCTATTGTCCTACTATAGTAATTTAATATGTAAATAGTTTTTTTTTGGTTGTAATTTTGAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27527</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>584912</contig_pos>
        <strand>+</strand>
        <context>TGTTCCCCTC[A/G]TCCCTATGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTTCCCCCAAATCGTTTTATATGGTGTTAATTGCTTTTTGTTCCCCTC</left_flank>
        <right_flank>TCCCTATGTTCTTTTTTTTATTTCATCGGTTGTTAACTTTGTTTCTGGTT</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCTTTATTTTTCTTACAAAAATCACATTATATGTATAATTTCTTCTAGTTGCAGTCCTTTTTAATATGTAATTTTTACGGATCCCAACGTTGAGCCAATTTATCTCGGTTCCTGTGAAAGATATTCAAAATTAGTAAACTGACAAAATAATTAAAATTCAATGATAAGCATTTTATCAATTGACCACTTTTGGATATCTTCTTCAGGAAACGAGATATAAAGACTCAAAGTTGACCTTCTGAATCCCTTCAATCCATCTTCTCAGGAATTAATTTCTTTGTACTATTCTCTTTTTGATGGTTCTCATGACCTCCACACACCATCATTTCATTTTATTTCCTCCTCTCCTGTCTTCACGGGTTTTATGACCAATTCTTCGTTTTTTTTTCTGTCTTCTATGTGCTTTTCTTTTTCTATTTCCATGTCCTTTCTTTCTTTATTCTAAGATTCTTCCCCCAAATCGTTTTATATGGTGTTAATTGCTTTTTGTTCCCCTCGTCCCTATGTTCTTTTTTTTATTTCATCGGTTGTTAACTTTGTTTCTGGTTCTGGTCCATAATGTGTAAATTCAATGAATTTTTAAAAGAAATTTTCTCTTTCCGAATGTTCAGATTTTCAGATTTTCAAATGCTCTCAATTTTGAGCTCAATTATCTCGGCTCCTTCAGAAGATATCAAAAATTTGTTAACAGATAAATTGTTTATCATGAAATCACCTATATTTTATCAATTGACAGATTTTTGATATCTTTTATAGGAATTGAGATAATTAAGCTCGAAGTTGACGGTTCAGGTGGCTGGAAGTTTGGAGAAGTAAAAAGAAAATAAAGAATAGAATAATCCCCCTGATCTTTTGATTTATAAAAATGCATAGATTATCGCCGACTGTATTTTTAAGTCGGCATCTTAACCTATAGGAAACCAGAGATCAGGGAAAGTTCGTCGGAAGAAATGTTCTTTGTGGCTTTAGAGTTATTTGGAACTTCTTTTATGTGATTT</canonical>
            <polymorphic>ATGCTTTATTTTTCTTACAAAAATCACATTATATGTATAATTTCTTCTAGTTGCAGTCCTTTTTAATATGTAATTTTTACGGATCCCAACGTTGAGCCAATTTATCTCGGTTCCTGTGAAAGATATTCAAAATTAGTAAACTGACAAAATAATTAAAATTCAATGATAAGCATTTTATCAATTGACCACTTTTGGATATCTTCTTCAGGAAACGAGATATAAAGACTCAAAGTTGACCTTCTGAATCCCTTCAATCCATCTTCTCAGGAATTAATTTCTTTGTACTATTCTCTTTTTGATGGTTCTCATGACCTCCACACACCATCATTTCATTTTATTTCCTCCTCTCCTGTCTTCACGGGTTTTATGACCAATTCTTCGTTTTTTTTTCTGTCTTCTATGTGCTTTTCTTTTTCTATTTCCATGTCCTTTCTTTCTTTATTCTAAGATTCTTCCCCCAAATCGTTTTATATGGTGTTAATTGCTTTTTGTTCCCCTCRTCCCTATGTTCTTTTTTTTATTTCATCGGTTGTTAACTTTGTTTCTGGTTCTGGTCCATAATGTGTAAATTCAATGAATTTTTAAAAGAAATTTTCTCTTTCCGAATGTTCAGATTTTCAGATTTTCAAATGCTCTCAATTTTGAGCTCAATTATCTCGGCTCCTTCAGAAGATATCAAAAATTTGTTAACAGATAAATTGTTTATCATGAAATCACCTATATTTTATCAATTGACAGATTTTTGATATCTTTTATAGGAATTGAGATAATTAAGCTCGAAGTTGACGGTTCAGGTGGCTGGAAGTTTGGAGAAGTAAAAAGAAAATAAAGAATAGAATAATCCCCCTGATCTTTTGATTTATAAAAATGCATAGATTATCGCCGACTGTATTTTTAAGTCGGCATCTTAACCTATAGGAAACCAGAGATCAGGGAAAGTTCGTCGGAAGAAATGTTCTTTGTGGCTTTAGAGTTATTTGGAACTTCTTTTATGTGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTGTCTTCTATGTGCTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAAATCTGAAAATCTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTGTCTTCTATGTGCTTTTCTTTTTCTATTTCCATGTCCTTTCTTTCTTTATTCTAAGATTCTTCCCCCAAATCGTTTTATATGGTGTTAATTGCTTTTTGTTCCCCTCGTCCCTATGTTCTTTTTTTTATTTCATCGGTTGTTAACTTTGTTTCTGGTTCTGGTCCATAATGTGTAAATTCAATGAATTTTTAAAAGAAATTTTCTCTTTCCGAATGTTCAGATTTTCAGATTTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTGTCTTCTATGTGCTTTTCTTTTTCTATTTCCATGTCCTTTCTTTCTTTATTCTAAGATTCTTCCCCCAAATCGTTTTATATGGTGTTAATTGCTTTTTGTTCCCCTCRTCCCTATGTTCTTTTTTTTATTTCATCGGTTGTTAACTTTGTTTCTGGTTCTGGTCCATAATGTGTAAATTCAATGAATTTTTAAAAGAAATTTTCTCTTTCCGAATGTTCAGATTTTCAGATTTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27528</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>585014</contig_pos>
        <strand>+</strand>
        <context>TTTTCTCTTT[C/T]CGAATGTTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGTCCATAATGTGTAAATTCAATGAATTTTTAAAAGAAATTTTCTCTTT</left_flank>
        <right_flank>CGAATGTTCAGATTTTCAGATTTTCAAATGCTCTCAATTTTGAGCTCAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCTCGGTTCCTGTGAAAGATATTCAAAATTAGTAAACTGACAAAATAATTAAAATTCAATGATAAGCATTTTATCAATTGACCACTTTTGGATATCTTCTTCAGGAAACGAGATATAAAGACTCAAAGTTGACCTTCTGAATCCCTTCAATCCATCTTCTCAGGAATTAATTTCTTTGTACTATTCTCTTTTTGATGGTTCTCATGACCTCCACACACCATCATTTCATTTTATTTCCTCCTCTCCTGTCTTCACGGGTTTTATGACCAATTCTTCGTTTTTTTTTCTGTCTTCTATGTGCTTTTCTTTTTCTATTTCCATGTCCTTTCTTTCTTTATTCTAAGATTCTTCCCCCAAATCGTTTTATATGGTGTTAATTGCTTTTTGTTCCCCTCGTCCCTATGTTCTTTTTTTTATTTCATCGGTTGTTAACTTTGTTTCTGGTTCTGGTCCATAATGTGTAAATTCAATGAATTTTTAAAAGAAATTTTCTCTTTCCGAATGTTCAGATTTTCAGATTTTCAAATGCTCTCAATTTTGAGCTCAATTATCTCGGCTCCTTCAGAAGATATCAAAAATTTGTTAACAGATAAATTGTTTATCATGAAATCACCTATATTTTATCAATTGACAGATTTTTGATATCTTTTATAGGAATTGAGATAATTAAGCTCGAAGTTGACGGTTCAGGTGGCTGGAAGTTTGGAGAAGTAAAAAGAAAATAAAGAATAGAATAATCCCCCTGATCTTTTGATTTATAAAAATGCATAGATTATCGCCGACTGTATTTTTAAGTCGGCATCTTAACCTATAGGAAACCAGAGATCAGGGAAAGTTCGTCGGAAGAAATGTTCTTTGTGGCTTTAGAGTTATTTGGAACTTCTTTTATGTGATTTACTGTAAAAGATCTAATATAATGCTCCTGAAATGTTCAACTTTGAGCCTATATATTTCGGTTCCTATGAGAGATATCGAAAAGTTGTCAACGGATAATATGT</canonical>
            <polymorphic>TATCTCGGTTCCTGTGAAAGATATTCAAAATTAGTAAACTGACAAAATAATTAAAATTCAATGATAAGCATTTTATCAATTGACCACTTTTGGATATCTTCTTCAGGAAACGAGATATAAAGACTCAAAGTTGACCTTCTGAATCCCTTCAATCCATCTTCTCAGGAATTAATTTCTTTGTACTATTCTCTTTTTGATGGTTCTCATGACCTCCACACACCATCATTTCATTTTATTTCCTCCTCTCCTGTCTTCACGGGTTTTATGACCAATTCTTCGTTTTTTTTTCTGTCTTCTATGTGCTTTTCTTTTTCTATTTCCATGTCCTTTCTTTCTTTATTCTAAGATTCTTCCCCCAAATCGTTTTATATGGTGTTAATTGCTTTTTGTTCCCCTCGTCCCTATGTTCTTTTTTTTATTTCATCGGTTGTTAACTTTGTTTCTGGTTCTGGTCCATAATGTGTAAATTCAATGAATTTTTAAAAGAAATTTTCTCTTTYCGAATGTTCAGATTTTCAGATTTTCAAATGCTCTCAATTTTGAGCTCAATTATCTCGGCTCCTTCAGAAGATATCAAAAATTTGTTAACAGATAAATTGTTTATCATGAAATCACCTATATTTTATCAATTGACAGATTTTTGATATCTTTTATAGGAATTGAGATAATTAAGCTCGAAGTTGACGGTTCAGGTGGCTGGAAGTTTGGAGAAGTAAAAAGAAAATAAAGAATAGAATAATCCCCCTGATCTTTTGATTTATAAAAATGCATAGATTATCGCCGACTGTATTTTTAAGTCGGCATCTTAACCTATAGGAAACCAGAGATCAGGGAAAGTTCGTCGGAAGAAATGTTCTTTGTGGCTTTAGAGTTATTTGGAACTTCTTTTATGTGATTTACTGTAAAAGATCTAATATAATGCTCCTGAAATGTTCAACTTTGAGCCTATATATTTCGGTTCCTATGAGAGATATCGAAAAGTTGTCAACGGATAATATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>361 278 156 140 48 9 8</canonical_bands>
                <polymorphic_bands>370 278 156 140 48 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGGTCCATAATGTGTAAATTC</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTTTTACTTCTCCAAACTTC</pcr_primer_p2>
		<pcr_amplicon_size>276</pcr_amplicon_size>
		<canonical_amplicon>TCTGGTCCATAATGTGTAAATTCAATGAATTTTTAAAAGAAATTTTCTCTTTCCGAATGTTCAGATTTTCAGATTTTCAAATGCTCTCAATTTTGAGCTCAATTATCTCGGCTCCTTCAGAAGATATCAAAAATTTGTTAACAGATAAATTGTTTATCATGAAATCACCTATATTTTATCAATTGACAGATTTTTGATATCTTTTATAGGAATTGAGATAATTAAGCTCGAAGTTGACGGTTCAGGTGGCTGGAAGTTTGGAGAAGTAAAAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTGGTCCATAATGTGTAAATTCAATGAATTTTTAAAAGAAATTTTCTCTTTYCGAATGTTCAGATTTTCAGATTTTCAAATGCTCTCAATTTTGAGCTCAATTATCTCGGCTCCTTCAGAAGATATCAAAAATTTGTTAACAGATAAATTGTTTATCATGAAATCACCTATATTTTATCAATTGACAGATTTTTGATATCTTTTATAGGAATTGAGATAATTAAGCTCGAAGTTGACGGTTCAGGTGGCTGGAAGTTTGGAGAAGTAAAAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27529</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>585052</contig_pos>
        <strand></strand>
        <context>ATGctctcaa[T/C]tttgagctca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATTTTCTCTTTCCGAATGTTCAGATTTTCAGATTTTCAAATGCTCTCAA</left_flank>
        <right_flank>TTTGAGCTCAATTATCTCGGCTCCTTCAGAAGATATCAAAAATTTGTTAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGACAAAATAATTAAAATTCAATGATAAGCATTTTATCAATTGACCACTTTTGGATATCTTCTTCAGGAAACGAGATATAAAGACTCAAAGTTGACCTTCTGAATCCCTTCAATCCATCTTCTCAGGAATTAATTTCTTTGTACTATTCTCTTTTTGATGGTTCTCATGACCTCCACACACCATCATTTCATTTTATTTCCTCCTCTCCTGTCTTCACGGGTTTTATGACCAATTCTTCGTTTTTTTTTCTGTCTTCTATGTGCTTTTCTTTTTCTATTTCCATGTCCTTTCTTTCTTTATTCTAAGATTCTTCCCCCAAATCGTTTTATATGGTGTTAATTGCTTTTTGTTCCCCTCGTCCCTATGTTCTTTTTTTTATTTCATCGGTTGTTAACTTTGTTTCTGGTTCTGGTCCATAATGTGTAAATTCAATGAATTTTTAAAAGAAATTTTCTCTTTCCGAATGTTCAGATTTTCAGATTTTCAAATGCTCTCAATTTTGAGCTCAATTATCTCGGCTCCTTCAGAAGATATCAAAAATTTGTTAACAGATAAATTGTTTATCATGAAATCACCTATATTTTATCAATTGACAGATTTTTGATATCTTTTATAGGAATTGAGATAATTAAGCTCGAAGTTGACGGTTCAGGTGGCTGGAAGTTTGGAGAAGTAAAAAGAAAATAAAGAATAGAATAATCCCCCTGATCTTTTGATTTATAAAAATGCATAGATTATCGCCGACTGTATTTTTAAGTCGGCATCTTAACCTATAGGAAACCAGAGATCAGGGAAAGTTCGTCGGAAGAAATGTTCTTTGTGGCTTTAGAGTTATTTGGAACTTCTTTTATGTGATTTACTGTAAAAGATCTAATATAATGCTCCTGAAATGTTCAACTTTGAGCCTATATATTTCGGTTCCTATGAGAGATATCGAAAAGTTGTCAACGGATAATATGTTTATCATAATATCATCAAAATTTTATTAGTTGATAAAG</canonical>
            <polymorphic>CTGACAAAATAATTAAAATTCAATGATAAGCATTTTATCAATTGACCACTTTTGGATATCTTCTTCAGGAAACGAGATATAAAGACTCAAAGTTGACCTTCTGAATCCCTTCAATCCATCTTCTCAGGAATTAATTTCTTTGTACTATTCTCTTTTTGATGGTTCTCATGACCTCCACACACCATCATTTCATTTTATTTCCTCCTCTCCTGTCTTCACGGGTTTTATGACCAATTCTTCGTTTTTTTTTCTGTCTTCTATGTGCTTTTCTTTTTCTATTTCCATGTCCTTTCTTTCTTTATTCTAAGATTCTTCCCCCAAATCGTTTTATATGGTGTTAATTGCTTTTTGTTCCCCTCGTCCCTATGTTCTTTTTTTTATTTCATCGGTTGTTAACTTTGTTTCTGGTTCTGGTCCATAATGTGTAAATTCAATGAATTTTTAAAAGAAATTTTCTCTTTCCGAATGTTCAGATTTTCAGATTTTCAAATGCTCTCAAYTTTGAGCTCAATTATCTCGGCTCCTTCAGAAGATATCAAAAATTTGTTAACAGATAAATTGTTTATCATGAAATCACCTATATTTTATCAATTGACAGATTTTTGATATCTTTTATAGGAATTGAGATAATTAAGCTCGAAGTTGACGGTTCAGGTGGCTGGAAGTTTGGAGAAGTAAAAAGAAAATAAAGAATAGAATAATCCCCCTGATCTTTTGATTTATAAAAATGCATAGATTATCGCCGACTGTATTTTTAAGTCGGCATCTTAACCTATAGGAAACCAGAGATCAGGGAAAGTTCGTCGGAAGAAATGTTCTTTGTGGCTTTAGAGTTATTTGGAACTTCTTTTATGTGATTTACTGTAAAAGATCTAATATAATGCTCCTGAAATGTTCAACTTTGAGCCTATATATTTCGGTTCCTATGAGAGATATCGAAAAGTTGTCAACGGATAATATGTTTATCATAATATCATCAAAATTTTATTAGTTGATAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>352 107 100 89 88 48 33 31 30 23 20 16 13 12 10 9 9 6 4</canonical_bands>
                <polymorphic_bands>352 107 100 89 88 60 33 31 30 23 20 16 13 10 9 9 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGGTCCATAATGTGTAAATTC</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTTTTACTTCTCCAAACTTC</pcr_primer_p2>
		<pcr_amplicon_size>276</pcr_amplicon_size>
		<canonical_amplicon>TCTGGTCCATAATGTGTAAATTCAATGAATTTTTAAAAGAAATTTTCTCTTTCCGAATGTTCAGATTTTCAGATTTTCAAATGCTCTCAATTTTGAGCTCAATTATCTCGGCTCCTTCAGAAGATATCAAAAATTTGTTAACAGATAAATTGTTTATCATGAAATCACCTATATTTTATCAATTGACAGATTTTTGATATCTTTTATAGGAATTGAGATAATTAAGCTCGAAGTTGACGGTTCAGGTGGCTGGAAGTTTGGAGAAGTAAAAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTGGTCCATAATGTGTAAATTCAATGAATTTTTAAAAGAAATTTTCTCTTTCCGAATGTTCAGATTTTCAGATTTTCAAATGCTCTCAAYTTTGAGCTCAATTATCTCGGCTCCTTCAGAAGATATCAAAAATTTGTTAACAGATAAATTGTTTATCATGAAATCACCTATATTTTATCAATTGACAGATTTTTGATATCTTTTATAGGAATTGAGATAATTAAGCTCGAAGTTGACGGTTCAGGTGGCTGGAAGTTTGGAGAAGTAAAAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27530</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>585100</contig_pos>
        <strand></strand>
        <context>aaaaatttgt[T/C]aacagataaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATTTTGAGCTCAATTATCTCGGCTCCTTCAGAAGATATCAAAAATTTGT</left_flank>
        <right_flank>AACAGATAAATTGTTTATCATGAAATCACCTATATTTTATCAATTGACAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTGGATATCTTCTTCAGGAAACGAGATATAAAGACTCAAAGTTGACCTTCTGAATCCCTTCAATCCATCTTCTCAGGAATTAATTTCTTTGTACTATTCTCTTTTTGATGGTTCTCATGACCTCCACACACCATCATTTCATTTTATTTCCTCCTCTCCTGTCTTCACGGGTTTTATGACCAATTCTTCGTTTTTTTTTCTGTCTTCTATGTGCTTTTCTTTTTCTATTTCCATGTCCTTTCTTTCTTTATTCTAAGATTCTTCCCCCAAATCGTTTTATATGGTGTTAATTGCTTTTTGTTCCCCTCGTCCCTATGTTCTTTTTTTTATTTCATCGGTTGTTAACTTTGTTTCTGGTTCTGGTCCATAATGTGTAAATTCAATGAATTTTTAAAAGAAATTTTCTCTTTCCGAATGTTCAGATTTTCAGATTTTCAAATGCTCTCAATTTTGAGCTCAATTATCTCGGCTCCTTCAGAAGATATCAAAAATTTGTTAACAGATAAATTGTTTATCATGAAATCACCTATATTTTATCAATTGACAGATTTTTGATATCTTTTATAGGAATTGAGATAATTAAGCTCGAAGTTGACGGTTCAGGTGGCTGGAAGTTTGGAGAAGTAAAAAGAAAATAAAGAATAGAATAATCCCCCTGATCTTTTGATTTATAAAAATGCATAGATTATCGCCGACTGTATTTTTAAGTCGGCATCTTAACCTATAGGAAACCAGAGATCAGGGAAAGTTCGTCGGAAGAAATGTTCTTTGTGGCTTTAGAGTTATTTGGAACTTCTTTTATGTGATTTACTGTAAAAGATCTAATATAATGCTCCTGAAATGTTCAACTTTGAGCCTATATATTTCGGTTCCTATGAGAGATATCGAAAAGTTGTCAACGGATAATATGTTTATCATAATATCATCAAAATTTTATTAGTTGATAAAGTTTTGATATTTATCATATGAACTGAGATATATAAGCTCGAAGTTGACG</canonical>
            <polymorphic>CTTTTGGATATCTTCTTCAGGAAACGAGATATAAAGACTCAAAGTTGACCTTCTGAATCCCTTCAATCCATCTTCTCAGGAATTAATTTCTTTGTACTATTCTCTTTTTGATGGTTCTCATGACCTCCACACACCATCATTTCATTTTATTTCCTCCTCTCCTGTCTTCACGGGTTTTATGACCAATTCTTCGTTTTTTTTTCTGTCTTCTATGTGCTTTTCTTTTTCTATTTCCATGTCCTTTCTTTCTTTATTCTAAGATTCTTCCCCCAAATCGTTTTATATGGTGTTAATTGCTTTTTGTTCCCCTCGTCCCTATGTTCTTTTTTTTATTTCATCGGTTGTTAACTTTGTTTCTGGTTCTGGTCCATAATGTGTAAATTCAATGAATTTTTAAAAGAAATTTTCTCTTTCCGAATGTTCAGATTTTCAGATTTTCAAATGCTCTCAATTTTGAGCTCAATTATCTCGGCTCCTTCAGAAGATATCAAAAATTTGTYAACAGATAAATTGTTTATCATGAAATCACCTATATTTTATCAATTGACAGATTTTTGATATCTTTTATAGGAATTGAGATAATTAAGCTCGAAGTTGACGGTTCAGGTGGCTGGAAGTTTGGAGAAGTAAAAAGAAAATAAAGAATAGAATAATCCCCCTGATCTTTTGATTTATAAAAATGCATAGATTATCGCCGACTGTATTTTTAAGTCGGCATCTTAACCTATAGGAAACCAGAGATCAGGGAAAGTTCGTCGGAAGAAATGTTCTTTGTGGCTTTAGAGTTATTTGGAACTTCTTTTATGTGATTTACTGTAAAAGATCTAATATAATGCTCCTGAAATGTTCAACTTTGAGCCTATATATTTCGGTTCCTATGAGAGATATCGAAAAGTTGTCAACGGATAATATGTTTATCATAATATCATCAAAATTTTATTAGTTGATAAAGTTTTGATATTTATCATATGAACTGAGATATATAAGCTCGAAGTTGACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTTAAC</site>
                <isoschizomers>
                    <enzyme>BstHPI</enzyme>
                    <enzyme>HpaI</enzyme>
                    <enzyme>KspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 346 154</canonical_bands>
                <polymorphic_bands>654 346</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>304 300 154 96 96 46 4</canonical_bands>
                <polymorphic_bands>304 300 250 96 46 4</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>280 207 124 105 84 83 55 49 13</canonical_bands>
                <polymorphic_bands>280 207 189 124 83 55 49 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTTCAGATTTTCAGATTTTCA</pcr_primer_p1>
		<pcr_primer_p2>AAGATCAGGGGGATTATTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGTTCAGATTTTCAGATTTTCAAATGCTCTCAATTTTGAGCTCAATTATCTCGGCTCCTTCAGAAGATATCAAAAATTTGTTAACAGATAAATTGTTTATCATGAAATCACCTATATTTTATCAATTGACAGATTTTTGATATCTTTTATAGGAATTGAGATAATTAAGCTCGAAGTTGACGGTTCAGGTGGCTGGAAGTTTGGAGAAGTAAAAAGAAAATAAAGAATAGAATAATCCCCCTGATCTT</canonical_amplicon>
		<polymorphic_amplicon>ATGTTCAGATTTTCAGATTTTCAAATGCTCTCAATTTTGAGCTCAATTATCTCGGCTCCTTCAGAAGATATCAAAAATTTGTYAACAGATAAATTGTTTATCATGAAATCACCTATATTTTATCAATTGACAGATTTTTGATATCTTTTATAGGAATTGAGATAATTAAGCTCGAAGTTGACGGTTCAGGTGGCTGGAAGTTTGGAGAAGTAAAAAGAAAATAAAGAATAGAATAATCCCCCTGATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27531</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>585126</contig_pos>
        <strand></strand>
        <context>tatcatgaaa[T/C]caccwatatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTTCAGAAGATATCAAAAATTTGTTAACAGATAAATTGTTTATCATGAAA</left_flank>
        <right_flank>CACCTATATTTTATCAATTGACAGATTTTTGATATCTTTTATAGGAATTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATATAAAGACTCAAAGTTGACCTTCTGAATCCCTTCAATCCATCTTCTCAGGAATTAATTTCTTTGTACTATTCTCTTTTTGATGGTTCTCATGACCTCCACACACCATCATTTCATTTTATTTCCTCCTCTCCTGTCTTCACGGGTTTTATGACCAATTCTTCGTTTTTTTTTCTGTCTTCTATGTGCTTTTCTTTTTCTATTTCCATGTCCTTTCTTTCTTTATTCTAAGATTCTTCCCCCAAATCGTTTTATATGGTGTTAATTGCTTTTTGTTCCCCTCGTCCCTATGTTCTTTTTTTTATTTCATCGGTTGTTAACTTTGTTTCTGGTTCTGGTCCATAATGTGTAAATTCAATGAATTTTTAAAAGAAATTTTCTCTTTCCGAATGTTCAGATTTTCAGATTTTCAAATGCTCTCAATTTTGAGCTCAATTATCTCGGCTCCTTCAGAAGATATCAAAAATTTGTTAACAGATAAATTGTTTATCATGAAATCACCTATATTTTATCAATTGACAGATTTTTGATATCTTTTATAGGAATTGAGATAATTAAGCTCGAAGTTGACGGTTCAGGTGGCTGGAAGTTTGGAGAAGTAAAAAGAAAATAAAGAATAGAATAATCCCCCTGATCTTTTGATTTATAAAAATGCATAGATTATCGCCGACTGTATTTTTAAGTCGGCATCTTAACCTATAGGAAACCAGAGATCAGGGAAAGTTCGTCGGAAGAAATGTTCTTTGTGGCTTTAGAGTTATTTGGAACTTCTTTTATGTGATTTACTGTAAAAGATCTAATATAATGCTCCTGAAATGTTCAACTTTGAGCCTATATATTTCGGTTCCTATGAGAGATATCGAAAAGTTGTCAACGGATAATATGTTTATCATAATATCATCAAAATTTTATTAGTTGATAAAGTTTTGATATTTATCATATGAACTGAGATATATAAGCTCGAAGTTGACGGTTTGAGTAAAACAAATATGTGATTT</canonical>
            <polymorphic>AGATATAAAGACTCAAAGTTGACCTTCTGAATCCCTTCAATCCATCTTCTCAGGAATTAATTTCTTTGTACTATTCTCTTTTTGATGGTTCTCATGACCTCCACACACCATCATTTCATTTTATTTCCTCCTCTCCTGTCTTCACGGGTTTTATGACCAATTCTTCGTTTTTTTTTCTGTCTTCTATGTGCTTTTCTTTTTCTATTTCCATGTCCTTTCTTTCTTTATTCTAAGATTCTTCCCCCAAATCGTTTTATATGGTGTTAATTGCTTTTTGTTCCCCTCGTCCCTATGTTCTTTTTTTTATTTCATCGGTTGTTAACTTTGTTTCTGGTTCTGGTCCATAATGTGTAAATTCAATGAATTTTTAAAAGAAATTTTCTCTTTCCGAATGTTCAGATTTTCAGATTTTCAAATGCTCTCAATTTTGAGCTCAATTATCTCGGCTCCTTCAGAAGATATCAAAAATTTGTTAACAGATAAATTGTTTATCATGAAAYCACCTATATTTTATCAATTGACAGATTTTTGATATCTTTTATAGGAATTGAGATAATTAAGCTCGAAGTTGACGGTTCAGGTGGCTGGAAGTTTGGAGAAGTAAAAAGAAAATAAAGAATAGAATAATCCCCCTGATCTTTTGATTTATAAAAATGCATAGATTATCGCCGACTGTATTTTTAAGTCGGCATCTTAACCTATAGGAAACCAGAGATCAGGGAAAGTTCGTCGGAAGAAATGTTCTTTGTGGCTTTAGAGTTATTTGGAACTTCTTTTATGTGATTTACTGTAAAAGATCTAATATAATGCTCCTGAAATGTTCAACTTTGAGCCTATATATTTCGGTTCCTATGAGAGATATCGAAAAGTTGTCAACGGATAATATGTTTATCATAATATCATCAAAATTTTATTAGTTGATAAAGTTTTGATATTTATCATATGAACTGAGATATATAAGCTCGAAGTTGACGGTTTGAGTAAAACAAATATGTGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTTCAGATTTTCAGATTTTCA</pcr_primer_p1>
		<pcr_primer_p2>AAGATCAGGGGGATTATTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGTTCAGATTTTCAGATTTTCAAATGCTCTCAATTTTGAGCTCAATTATCTCGGCTCCTTCAGAAGATATCAAAAATTTGTTAACAGATAAATTGTTTATCATGAAATCACCTATATTTTATCAATTGACAGATTTTTGATATCTTTTATAGGAATTGAGATAATTAAGCTCGAAGTTGACGGTTCAGGTGGCTGGAAGTTTGGAGAAGTAAAAAGAAAATAAAGAATAGAATAATCCCCCTGATCTT</canonical_amplicon>
		<polymorphic_amplicon>ATGTTCAGATTTTCAGATTTTCAAATGCTCTCAATTTTGAGCTCAATTATCTCGGCTCCTTCAGAAGATATCAAAAATTTGTTAACAGATAAATTGTTTATCATGAAAYCACCTATATTTTATCAATTGACAGATTTTTGATATCTTTTATAGGAATTGAGATAATTAAGCTCGAAGTTGACGGTTCAGGTGGCTGGAAGTTTGGAGAAGTAAAAAGAAAATAAAGAATAGAATAATCCCCCTGATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27532</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>585131</contig_pos>
        <strand></strand>
        <context>tgaaaycacc[T/A]atattttatc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GAAGATATCAAAAATTTGTTAACAGATAAATTGTTTATCATGAAATCACC</left_flank>
        <right_flank>ATATTTTATCAATTGACAGATTTTTGATATCTTTTATAGGAATTGAGATA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAGACTCAAAGTTGACCTTCTGAATCCCTTCAATCCATCTTCTCAGGAATTAATTTCTTTGTACTATTCTCTTTTTGATGGTTCTCATGACCTCCACACACCATCATTTCATTTTATTTCCTCCTCTCCTGTCTTCACGGGTTTTATGACCAATTCTTCGTTTTTTTTTCTGTCTTCTATGTGCTTTTCTTTTTCTATTTCCATGTCCTTTCTTTCTTTATTCTAAGATTCTTCCCCCAAATCGTTTTATATGGTGTTAATTGCTTTTTGTTCCCCTCGTCCCTATGTTCTTTTTTTTATTTCATCGGTTGTTAACTTTGTTTCTGGTTCTGGTCCATAATGTGTAAATTCAATGAATTTTTAAAAGAAATTTTCTCTTTCCGAATGTTCAGATTTTCAGATTTTCAAATGCTCTCAATTTTGAGCTCAATTATCTCGGCTCCTTCAGAAGATATCAAAAATTTGTTAACAGATAAATTGTTTATCATGAAATCACCTATATTTTATCAATTGACAGATTTTTGATATCTTTTATAGGAATTGAGATAATTAAGCTCGAAGTTGACGGTTCAGGTGGCTGGAAGTTTGGAGAAGTAAAAAGAAAATAAAGAATAGAATAATCCCCCTGATCTTTTGATTTATAAAAATGCATAGATTATCGCCGACTGTATTTTTAAGTCGGCATCTTAACCTATAGGAAACCAGAGATCAGGGAAAGTTCGTCGGAAGAAATGTTCTTTGTGGCTTTAGAGTTATTTGGAACTTCTTTTATGTGATTTACTGTAAAAGATCTAATATAATGCTCCTGAAATGTTCAACTTTGAGCCTATATATTTCGGTTCCTATGAGAGATATCGAAAAGTTGTCAACGGATAATATGTTTATCATAATATCATCAAAATTTTATTAGTTGATAAAGTTTTGATATTTATCATATGAACTGAGATATATAAGCTCGAAGTTGACGGTTTGAGTAAAACAAATATGTGATTTATCGT</canonical>
            <polymorphic>TAAAGACTCAAAGTTGACCTTCTGAATCCCTTCAATCCATCTTCTCAGGAATTAATTTCTTTGTACTATTCTCTTTTTGATGGTTCTCATGACCTCCACACACCATCATTTCATTTTATTTCCTCCTCTCCTGTCTTCACGGGTTTTATGACCAATTCTTCGTTTTTTTTTCTGTCTTCTATGTGCTTTTCTTTTTCTATTTCCATGTCCTTTCTTTCTTTATTCTAAGATTCTTCCCCCAAATCGTTTTATATGGTGTTAATTGCTTTTTGTTCCCCTCGTCCCTATGTTCTTTTTTTTATTTCATCGGTTGTTAACTTTGTTTCTGGTTCTGGTCCATAATGTGTAAATTCAATGAATTTTTAAAAGAAATTTTCTCTTTCCGAATGTTCAGATTTTCAGATTTTCAAATGCTCTCAATTTTGAGCTCAATTATCTCGGCTCCTTCAGAAGATATCAAAAATTTGTTAACAGATAAATTGTTTATCATGAAATCACCWATATTTTATCAATTGACAGATTTTTGATATCTTTTATAGGAATTGAGATAATTAAGCTCGAAGTTGACGGTTCAGGTGGCTGGAAGTTTGGAGAAGTAAAAAGAAAATAAAGAATAGAATAATCCCCCTGATCTTTTGATTTATAAAAATGCATAGATTATCGCCGACTGTATTTTTAAGTCGGCATCTTAACCTATAGGAAACCAGAGATCAGGGAAAGTTCGTCGGAAGAAATGTTCTTTGTGGCTTTAGAGTTATTTGGAACTTCTTTTATGTGATTTACTGTAAAAGATCTAATATAATGCTCCTGAAATGTTCAACTTTGAGCCTATATATTTCGGTTCCTATGAGAGATATCGAAAAGTTGTCAACGGATAATATGTTTATCATAATATCATCAAAATTTTATTAGTTGATAAAGTTTTGATATTTATCATATGAACTGAGATATATAAGCTCGAAGTTGACGGTTTGAGTAAAACAAATATGTGATTTATCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTTCAGATTTTCAGATTTTCA</pcr_primer_p1>
		<pcr_primer_p2>AAGATCAGGGGGATTATTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGTTCAGATTTTCAGATTTTCAAATGCTCTCAATTTTGAGCTCAATTATCTCGGCTCCTTCAGAAGATATCAAAAATTTGTTAACAGATAAATTGTTTATCATGAAATCACCTATATTTTATCAATTGACAGATTTTTGATATCTTTTATAGGAATTGAGATAATTAAGCTCGAAGTTGACGGTTCAGGTGGCTGGAAGTTTGGAGAAGTAAAAAGAAAATAAAGAATAGAATAATCCCCCTGATCTT</canonical_amplicon>
		<polymorphic_amplicon>ATGTTCAGATTTTCAGATTTTCAAATGCTCTCAATTTTGAGCTCAATTATCTCGGCTCCTTCAGAAGATATCAAAAATTTGTTAACAGATAAATTGTTTATCATGAAATCACCWATATTTTATCAATTGACAGATTTTTGATATCTTTTATAGGAATTGAGATAATTAAGCTCGAAGTTGACGGTTCAGGTGGCTGGAAGTTTGGAGAAGTAAAAAGAAAATAAAGAATAGAATAATCCCCCTGATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27533</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>585181</contig_pos>
        <strand></strand>
        <context>gaattgagat[A/G]attaagctcg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATATTTTATCAATTGACAGATTTTTGATATCTTTTATAGGAATTGAGAT</left_flank>
        <right_flank>ATTAAGCTCGAAGTTGACGGTTCAGGTGGCTGGAAGTTTGGAGAAGTAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTAATTTCTTTGTACTATTCTCTTTTTGATGGTTCTCATGACCTCCACACACCATCATTTCATTTTATTTCCTCCTCTCCTGTCTTCACGGGTTTTATGACCAATTCTTCGTTTTTTTTTCTGTCTTCTATGTGCTTTTCTTTTTCTATTTCCATGTCCTTTCTTTCTTTATTCTAAGATTCTTCCCCCAAATCGTTTTATATGGTGTTAATTGCTTTTTGTTCCCCTCGTCCCTATGTTCTTTTTTTTATTTCATCGGTTGTTAACTTTGTTTCTGGTTCTGGTCCATAATGTGTAAATTCAATGAATTTTTAAAAGAAATTTTCTCTTTCCGAATGTTCAGATTTTCAGATTTTCAAATGCTCTCAATTTTGAGCTCAATTATCTCGGCTCCTTCAGAAGATATCAAAAATTTGTTAACAGATAAATTGTTTATCATGAAATCACCTATATTTTATCAATTGACAGATTTTTGATATCTTTTATAGGAATTGAGATAATTAAGCTCGAAGTTGACGGTTCAGGTGGCTGGAAGTTTGGAGAAGTAAAAAGAAAATAAAGAATAGAATAATCCCCCTGATCTTTTGATTTATAAAAATGCATAGATTATCGCCGACTGTATTTTTAAGTCGGCATCTTAACCTATAGGAAACCAGAGATCAGGGAAAGTTCGTCGGAAGAAATGTTCTTTGTGGCTTTAGAGTTATTTGGAACTTCTTTTATGTGATTTACTGTAAAAGATCTAATATAATGCTCCTGAAATGTTCAACTTTGAGCCTATATATTTCGGTTCCTATGAGAGATATCGAAAAGTTGTCAACGGATAATATGTTTATCATAATATCATCAAAATTTTATTAGTTGATAAAGTTTTGATATTTATCATATGAACTGAGATATATAAGCTCGAAGTTGACGGTTTGAGTAAAACAAATATGTGATTTATCGTCGAATTTCGGCGTCAGATTTGATCGAACGAGTCTGAAATTTTTCAGGTCT</canonical>
            <polymorphic>ATTAATTTCTTTGTACTATTCTCTTTTTGATGGTTCTCATGACCTCCACACACCATCATTTCATTTTATTTCCTCCTCTCCTGTCTTCACGGGTTTTATGACCAATTCTTCGTTTTTTTTTCTGTCTTCTATGTGCTTTTCTTTTTCTATTTCCATGTCCTTTCTTTCTTTATTCTAAGATTCTTCCCCCAAATCGTTTTATATGGTGTTAATTGCTTTTTGTTCCCCTCGTCCCTATGTTCTTTTTTTTATTTCATCGGTTGTTAACTTTGTTTCTGGTTCTGGTCCATAATGTGTAAATTCAATGAATTTTTAAAAGAAATTTTCTCTTTCCGAATGTTCAGATTTTCAGATTTTCAAATGCTCTCAATTTTGAGCTCAATTATCTCGGCTCCTTCAGAAGATATCAAAAATTTGTTAACAGATAAATTGTTTATCATGAAATCACCTATATTTTATCAATTGACAGATTTTTGATATCTTTTATAGGAATTGAGATRATTAAGCTCGAAGTTGACGGTTCAGGTGGCTGGAAGTTTGGAGAAGTAAAAAGAAAATAAAGAATAGAATAATCCCCCTGATCTTTTGATTTATAAAAATGCATAGATTATCGCCGACTGTATTTTTAAGTCGGCATCTTAACCTATAGGAAACCAGAGATCAGGGAAAGTTCGTCGGAAGAAATGTTCTTTGTGGCTTTAGAGTTATTTGGAACTTCTTTTATGTGATTTACTGTAAAAGATCTAATATAATGCTCCTGAAATGTTCAACTTTGAGCCTATATATTTCGGTTCCTATGAGAGATATCGAAAAGTTGTCAACGGATAATATGTTTATCATAATATCATCAAAATTTTATTAGTTGATAAAGTTTTGATATTTATCATATGAACTGAGATATATAAGCTCGAAGTTGACGGTTTGAGTAAAACAAATATGTGATTTATCGTCGAATTTCGGCGTCAGATTTGATCGAACGAGTCTGAAATTTTTCAGGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>352 107 101 100 88 48 34 33 31 30 16 14 13 12 9 9 3</canonical_bands>
                <polymorphic_bands>361 107 101 100 88 48 34 33 31 30 16 14 13 12 9 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTTCAGATTTTCAGATTTTCA</pcr_primer_p1>
		<pcr_primer_p2>AAGATCAGGGGGATTATTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGTTCAGATTTTCAGATTTTCAAATGCTCTCAATTTTGAGCTCAATTATCTCGGCTCCTTCAGAAGATATCAAAAATTTGTTAACAGATAAATTGTTTATCATGAAATCACCTATATTTTATCAATTGACAGATTTTTGATATCTTTTATAGGAATTGAGATAATTAAGCTCGAAGTTGACGGTTCAGGTGGCTGGAAGTTTGGAGAAGTAAAAAGAAAATAAAGAATAGAATAATCCCCCTGATCTT</canonical_amplicon>
		<polymorphic_amplicon>ATGTTCAGATTTTCAGATTTTCAAATGCTCTCAATTTTGAGCTCAATTATCTCGGCTCCTTCAGAAGATATCAAAAATTTGTTAACAGATAAATTGTTTATCATGAAATCACCTATATTTTATCAATTGACAGATTTTTGATATCTTTTATAGGAATTGAGATRATTAAGCTCGAAGTTGACGGTTCAGGTGGCTGGAAGTTTGGAGAAGTAAAAAGAAAATAAAGAATAGAATAATCCCCCTGATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27534</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>585429</contig_pos>
        <strand></strand>
        <context>aaagatctaa[T/C]ataatgctcc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTAGAGTTATTTGGAACTTCTTTTATGTGATTTACTGTAAAAGATCTAA</left_flank>
        <right_flank>ATAATGCTCCTGAAATGTTCAACTTTGAGCCTATATATTTCGGTTCCTAT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATTTCATCGGTTGTTAACTTTGTTTCTGGTTCTGGTCCATAATGTGTAAATTCAATGAATTTTTAAAAGAAATTTTCTCTTTCCGAATGTTCAGATTTTCAGATTTTCAAATGCTCTCAATTTTGAGCTCAATTATCTCGGCTCCTTCAGAAGATATCAAAAATTTGTTAACAGATAAATTGTTTATCATGAAATCACCTATATTTTATCAATTGACAGATTTTTGATATCTTTTATAGGAATTGAGATAATTAAGCTCGAAGTTGACGGTTCAGGTGGCTGGAAGTTTGGAGAAGTAAAAAGAAAATAAAGAATAGAATAATCCCCCTGATCTTTTGATTTATAAAAATGCATAGATTATCGCCGACTGTATTTTTAAGTCGGCATCTTAACCTATAGGAAACCAGAGATCAGGGAAAGTTCGTCGGAAGAAATGTTCTTTGTGGCTTTAGAGTTATTTGGAACTTCTTTTATGTGATTTACTGTAAAAGATCTAATATAATGCTCCTGAAATGTTCAACTTTGAGCCTATATATTTCGGTTCCTATGAGAGATATCGAAAAGTTGTCAACGGATAATATGTTTATCATAATATCATCAAAATTTTATTAGTTGATAAAGTTTTGATATTTATCATATGAACTGAGATATATAAGCTCGAAGTTGACGGTTTGAGTAAAACAAATATGTGATTTATCGTCGAATTTCGGCGTCAGATTTGATCGAACGAGTCTGAAATTTTTCAGGTCTACTAAACAAAAACAGAGCTTACATTTTGTAGTTGACAACTTTTTGCAAATATTCATCCAAATGAGATATACCGCTTGAAAGTGTAATGATCATGAACTCAACGTCAATTCTGGAAGTTTTGGTACTCGGTTGGTTTCAAGTGGTTTATCTCATTTCGATGAATTTTTACAAGAAAATTGTCAACTACAAAATTGAAGCTCTATTGTTGTTTGGTGGACCTAAAACTTTGAAGCTTCTCAGACAAAATC</canonical>
            <polymorphic>TTATTTCATCGGTTGTTAACTTTGTTTCTGGTTCTGGTCCATAATGTGTAAATTCAATGAATTTTTAAAAGAAATTTTCTCTTTCCGAATGTTCAGATTTTCAGATTTTCAAATGCTCTCAATTTTGAGCTCAATTATCTCGGCTCCTTCAGAAGATATCAAAAATTTGTTAACAGATAAATTGTTTATCATGAAATCACCTATATTTTATCAATTGACAGATTTTTGATATCTTTTATAGGAATTGAGATAATTAAGCTCGAAGTTGACGGTTCAGGTGGCTGGAAGTTTGGAGAAGTAAAAAGAAAATAAAGAATAGAATAATCCCCCTGATCTTTTGATTTATAAAAATGCATAGATTATCGCCGACTGTATTTTTAAGTCGGCATCTTAACCTATAGGAAACCAGAGATCAGGGAAAGTTCGTCGGAAGAAATGTTCTTTGTGGCTTTAGAGTTATTTGGAACTTCTTTTATGTGATTTACTGTAAAAGATCTAAYATAATGCTCCTGAAATGTTCAACTTTGAGCCTATATATTTCGGTTCCTATGAGAGATATCGAAAAGTTGTCAACGGATAATATGTTTATCATAATATCATCAAAATTTTATTAGTTGATAAAGTTTTGATATTTATCATATGAACTGAGATATATAAGCTCGAAGTTGACGGTTTGAGTAAAACAAATATGTGATTTATCGTCGAATTTCGGCGTCAGATTTGATCGAACGAGTCTGAAATTTTTCAGGTCTACTAAACAAAAACAGAGCTTACATTTTGTAGTTGACAACTTTTTGCAAATATTCATCCAAATGAGATATACCGCTTGAAAGTGTAATGATCATGAACTCAACGTCAATTCTGGAAGTTTTGGTACTCGGTTGGTTTCAAGTGGTTTATCTCATTTCGATGAATTTTTACAAGAAAATTGTCAACTACAAAATTGAAGCTCTATTGTTGTTTGGTGGACCTAAAACTTTGAAGCTTCTCAGACAAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCTTTAGAGTTATTTGGAACTT</pcr_primer_p1>
		<pcr_primer_p2>AATTCGACGATAAATCACATATT</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>GGCTTTAGAGTTATTTGGAACTTCTTTTATGTGATTTACTGTAAAAGATCTAATATAATGCTCCTGAAATGTTCAACTTTGAGCCTATATATTTCGGTTCCTATGAGAGATATCGAAAAGTTGTCAACGGATAATATGTTTATCATAATATCATCAAAATTTTATTAGTTGATAAAGTTTTGATATTTATCATATGAACTGAGATATATAAGCTCGAAGTTGACGGTTTGAGTAAAACAAATATGTGATTTATCGTCGAATT</canonical_amplicon>
		<polymorphic_amplicon>GGCTTTAGAGTTATTTGGAACTTCTTTTATGTGATTTACTGTAAAAGATCTAAYATAATGCTCCTGAAATGTTCAACTTTGAGCCTATATATTTCGGTTCCTATGAGAGATATCGAAAAGTTGTCAACGGATAATATGTTTATCATAATATCATCAAAATTTTATTAGTTGATAAAGTTTTGATATTTATCATATGAACTGAGATATATAAGCTCGAAGTTGACGGTTTGAGTAAAACAAATATGTGATTTATCGTCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27535</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>586859</contig_pos>
        <strand>+</strand>
        <context>AGAAGAGTGC[C/T]TCTTTTTTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATCAAACGGTTATCAGATAGATAGTTGGGTCAGAATTTTAGAAGAGTGC</left_flank>
        <right_flank>TCTTTTTTTAAGCTTTCGAGATTTCTAGTTTTTTTTTAATTTTTATAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATCTATCCTTTTTACGACTTCTTTTTTTTCTTTCAGAAAAAAAAGAGAACTGTGCCAATCGGTTCATCTAATTACCGAGTGATTAATAGCTTTGCCAAAGTCATAAATTATCAGTAAATTTCACTTCCTGTTGGTTTTGATATATCAGAATGAGAGAAAGATAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAATTTAGGTATATATAACTGTTCTATGATTGAAGAACAAAGTTCAACGGATGTTGAATTTTTCAGAGCTTTCTTTAAAAATCCACAAAACTTTGTTCTTATTTTCCATGTTTGATTTTTGAGTATTTCGATTTTCTATTGTTTTTTGGATGGGTATGACGTGATTAGGGGGTCAGAATGATGTGTTGATGAGAGAAGAAGACTAGAACACATTGAATACTAAAAATCGATGACGTTGAATGATTATCAAACGGTTATCAGATAGATAGTTGGGTCAGAATTTTAGAAGAGTGCCTCTTTTTTTAAGCTTTCGAGATTTCTAGTTTTTTTTTAATTTTTATAGAAACTTATCATTTCAAACTGATTTGTAATCAGAAAAATCCAATTTACAACAAATCGACCTTTCTTCATAAACCAATTTCTTTGTATCTTAAAGTTTGAAACTTTCAAAAAAGTTTTTCTTAATAACTACAAAATACCAAAAAAAAACGTAAAAATGAACATTTTCACGTATCGAGTTGACCTCAAAACTATGCAGAAATTCATGTCAACAAATGATTTGCATAAAAACGATTTGGCAAACCACGAGGGAAAAATTTGCGTCCTCCAAGTTCCCATACATAAATAGTTCGGTTTCATAATATTATTACTGTGAGACGACTACAGGTTCTCGTTGTTTGCCAGCAAATTTTAGATGAACCTCACTCTATTTCAAAGAACCTGGTCGGCAAACGCGCCCCAGCGAACGTCAAAAATAATTTCGCAACGAGTCAAATTTCGTTGGCTGAGGATCAA</canonical>
            <polymorphic>AGATCTATCCTTTTTACGACTTCTTTTTTTTCTTTCAGAAAAAAAAGAGAACTGTGCCAATCGGTTCATCTAATTACCGAGTGATTAATAGCTTTGCCAAAGTCATAAATTATCAGTAAATTTCACTTCCTGTTGGTTTTGATATATCAGAATGAGAGAAAGATAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAATTTAGGTATATATAACTGTTCTATGATTGAAGAACAAAGTTCAACGGATGTTGAATTTTTCAGAGCTTTCTTTAAAAATCCACAAAACTTTGTTCTTATTTTCCATGTTTGATTTTTGAGTATTTCGATTTTCTATTGTTTTTTGGATGGGTATGACGTGATTAGGGGGTCAGAATGATGTGTTGATGAGAGAAGAAGACTAGAACACATTGAATACTAAAAATCGATGACGTTGAATGATTATCAAACGGTTATCAGATAGATAGTTGGGTCAGAATTTTAGAAGAGTGCYTCTTTTTTTAAGCTTTCGAGATTTCTAGTTTTTTTTTAATTTTTATAGAAACTTATCATTTCAAACTGATTTGTAATCAGAAAAATCCAATTTACAACAAATCGACCTTTCTTCATAAACCAATTTCTTTGTATCTTAAAGTTTGAAACTTTCAAAAAAGTTTTTCTTAATAACTACAAAATACCAAAAAAAAACGTAAAAATGAACATTTTCACGTATCGAGTTGACCTCAAAACTATGCAGAAATTCATGTCAACAAATGATTTGCATAAAAACGATTTGGCAAACCACGAGGGAAAAATTTGCGTCCTCCAAGTTCCCATACATAAATAGTTCGGTTTCATAATATTATTACTGTGAGACGACTACAGGTTCTCGTTGTTTGCCAGCAAATTTTAGATGAACCTCACTCTATTTCAAAGAACCTGGTCGGCAAACGCGCCCCAGCGAACGTCAAAAATAATTTCGCAACGAGTCAAATTTCGTTGGCTGAGGATCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTGTTGATGAGAGAAGAAGAC</pcr_primer_p1>
		<pcr_primer_p2>CAAAGAAATTGGTTTATGAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATGTGTTGATGAGAGAAGAAGACTAGAACACATTGAATACTAAAAATCGATGACGTTGAATGATTATCAAACGGTTATCAGATAGATAGTTGGGTCAGAATTTTAGAAGAGTGCCTCTTTTTTTAAGCTTTCGAGATTTCTAGTTTTTTTTTAATTTTTATAGAAACTTATCATTTCAAACTGATTTGTAATCAGAAAAATCCAATTTACAACAAATCGACCTTTCTTCATAAACCAATTTCTTTG</canonical_amplicon>
		<polymorphic_amplicon>ATGTGTTGATGAGAGAAGAAGACTAGAACACATTGAATACTAAAAATCGATGACGTTGAATGATTATCAAACGGTTATCAGATAGATAGTTGGGTCAGAATTTTAGAAGAGTGCYTCTTTTTTTAAGCTTTCGAGATTTCTAGTTTTTTTTTAATTTTTATAGAAACTTATCATTTCAAACTGATTTGTAATCAGAAAAATCCAATTTACAACAAATCGACCTTTCTTCATAAACCAATTTCTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27536</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>587025</contig_pos>
        <strand>+</strand>
        <context>AAAAGTTTTT[C/T]TTAATAACTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAACCAATTTCTTTGTATCTTAAAGTTTGAAACTTTCAAAAAAGTTTTT</left_flank>
        <right_flank>TTAATAACTACAAAATACCAAAAAAAAACGTAAAAATGAACATTTTCACG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAATTTAGGTATATATAACTGTTCTATGATTGAAGAACAAAGTTCAACGGATGTTGAATTTTTCAGAGCTTTCTTTAAAAATCCACAAAACTTTGTTCTTATTTTCCATGTTTGATTTTTGAGTATTTCGATTTTCTATTGTTTTTTGGATGGGTATGACGTGATTAGGGGGTCAGAATGATGTGTTGATGAGAGAAGAAGACTAGAACACATTGAATACTAAAAATCGATGACGTTGAATGATTATCAAACGGTTATCAGATAGATAGTTGGGTCAGAATTTTAGAAGAGTGCCTCTTTTTTTAAGCTTTCGAGATTTCTAGTTTTTTTTTAATTTTTATAGAAACTTATCATTTCAAACTGATTTGTAATCAGAAAAATCCAATTTACAACAAATCGACCTTTCTTCATAAACCAATTTCTTTGTATCTTAAAGTTTGAAACTTTCAAAAAAGTTTTTCTTAATAACTACAAAATACCAAAAAAAAACGTAAAAATGAACATTTTCACGTATCGAGTTGACCTCAAAACTATGCAGAAATTCATGTCAACAAATGATTTGCATAAAAACGATTTGGCAAACCACGAGGGAAAAATTTGCGTCCTCCAAGTTCCCATACATAAATAGTTCGGTTTCATAATATTATTACTGTGAGACGACTACAGGTTCTCGTTGTTTGCCAGCAAATTTTAGATGAACCTCACTCTATTTCAAAGAACCTGGTCGGCAAACGCGCCCCAGCGAACGTCAAAAATAATTTCGCAACGAGTCAAATTTCGTTGGCTGAGGATCAAACTTTAAAACGTTGAGCGAAAAAAGCAAGCGTTGCAGTGCGTTGATTGAAATTAAATAGGTCAAATCCACGTCAACTTTTAAATTATTTAATTTCGCATGGCCTAAAAGTTTTCTGGGGCTCGGTTTTCGACCCGTTGCTGTGAACCCGTGGATTCTTGCCTTTAA</canonical>
            <polymorphic>AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAATTTAGGTATATATAACTGTTCTATGATTGAAGAACAAAGTTCAACGGATGTTGAATTTTTCAGAGCTTTCTTTAAAAATCCACAAAACTTTGTTCTTATTTTCCATGTTTGATTTTTGAGTATTTCGATTTTCTATTGTTTTTTGGATGGGTATGACGTGATTAGGGGGTCAGAATGATGTGTTGATGAGAGAAGAAGACTAGAACACATTGAATACTAAAAATCGATGACGTTGAATGATTATCAAACGGTTATCAGATAGATAGTTGGGTCAGAATTTTAGAAGAGTGCCTCTTTTTTTAAGCTTTCGAGATTTCTAGTTTTTTTTTAATTTTTATAGAAACTTATCATTTCAAACTGATTTGTAATCAGAAAAATCCAATTTACAACAAATCGACCTTTCTTCATAAACCAATTTCTTTGTATCTTAAAGTTTGAAACTTTCAAAAAAGTTTTTYTTAATAACTACAAAATACCAAAAAAAAACGTAAAAATGAACATTTTCACGTATCGAGTTGACCTCAAAACTATGCAGAAATTCATGTCAACAAATGATTTGCATAAAAACGATTTGGCAAACCACGAGGGAAAAATTTGCGTCCTCCAAGTTCCCATACATAAATAGTTCGGTTTCATAATATTATTACTGTGAGACGACTACAGGTTCTCGTTGTTTGCCAGCAAATTTTAGATGAACCTCACTCTATTTCAAAGAACCTGGTCGGCAAACGCGCCCCAGCGAACGTCAAAAATAATTTCGCAACGAGTCAAATTTCGTTGGCTGAGGATCAAACTTTAAAACGTTGAGCGAAAAAAGCAAGCGTTGCAGTGCGTTGATTGAAATTAAATAGGTCAAATCCACGTCAACTTTTAAATTATTTAATTTCGCATGGCCTAAAAGTTTTCTGGGGCTCGGTTTTCGACCCGTTGCTGTGAACCCGTGGATTCTTGCCTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTTCGAGATTTCTAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTTGACATGAATTTCTGCATAGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGCTTTCGAGATTTCTAGTTTTTTTTTAATTTTTATAGAAACTTATCATTTCAAACTGATTTGTAATCAGAAAAATCCAATTTACAACAAATCGACCTTTCTTCATAAACCAATTTCTTTGTATCTTAAAGTTTGAAACTTTCAAAAAAGTTTTTCTTAATAACTACAAAATACCAAAAAAAAACGTAAAAATGAACATTTTCACGTATCGAGTTGACCTCAAAACTATGCAGAAATTCATGTCAAC</canonical_amplicon>
		<polymorphic_amplicon>AAGCTTTCGAGATTTCTAGTTTTTTTTTAATTTTTATAGAAACTTATCATTTCAAACTGATTTGTAATCAGAAAAATCCAATTTACAACAAATCGACCTTTCTTCATAAACCAATTTCTTTGTATCTTAAAGTTTGAAACTTTCAAAAAAGTTTTTYTTAATAACTACAAAATACCAAAAAAAAACGTAAAAATGAACATTTTCACGTATCGAGTTGACCTCAAAACTATGCAGAAATTCATGTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27537</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>587043</contig_pos>
        <strand>+</strand>
        <context>CTACAAAATA[A/G]CAAAAAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTAAAGTTTGAAACTTTCAAAAAAGTTTTTCTTAATAACTACAAAATA</left_flank>
        <right_flank>CAAAAAAAAACGTAAAAATGAACATTTTCACGTATCGAGTTGACCTCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGAGAGAGAGAGAGAGAGAAAATTTAGGTATATATAACTGTTCTATGATTGAAGAACAAAGTTCAACGGATGTTGAATTTTTCAGAGCTTTCTTTAAAAATCCACAAAACTTTGTTCTTATTTTCCATGTTTGATTTTTGAGTATTTCGATTTTCTATTGTTTTTTGGATGGGTATGACGTGATTAGGGGGTCAGAATGATGTGTTGATGAGAGAAGAAGACTAGAACACATTGAATACTAAAAATCGATGACGTTGAATGATTATCAAACGGTTATCAGATAGATAGTTGGGTCAGAATTTTAGAAGAGTGCCTCTTTTTTTAAGCTTTCGAGATTTCTAGTTTTTTTTTAATTTTTATAGAAACTTATCATTTCAAACTGATTTGTAATCAGAAAAATCCAATTTACAACAAATCGACCTTTCTTCATAAACCAATTTCTTTGTATCTTAAAGTTTGAAACTTTCAAAAAAGTTTTTCTTAATAACTACAAAATACCAAAAAAAAACGTAAAAATGAACATTTTCACGTATCGAGTTGACCTCAAAACTATGCAGAAATTCATGTCAACAAATGATTTGCATAAAAACGATTTGGCAAACCACGAGGGAAAAATTTGCGTCCTCCAAGTTCCCATACATAAATAGTTCGGTTTCATAATATTATTACTGTGAGACGACTACAGGTTCTCGTTGTTTGCCAGCAAATTTTAGATGAACCTCACTCTATTTCAAAGAACCTGGTCGGCAAACGCGCCCCAGCGAACGTCAAAAATAATTTCGCAACGAGTCAAATTTCGTTGGCTGAGGATCAAACTTTAAAACGTTGAGCGAAAAAAGCAAGCGTTGCAGTGCGTTGATTGAAATTAAATAGGTCAAATCCACGTCAACTTTTAAATTATTTAATTTCGCATGGCCTAAAAGTTTTCTGGGGCTCGGTTTTCGACCCGTTGCTGTGAACCCGTGGATTCTTGCCTTTAAAGGTCCCCTTAGGGAATT</canonical>
            <polymorphic>AGAGAGAGAGAGAGAGAGAGAAAATTTAGGTATATATAACTGTTCTATGATTGAAGAACAAAGTTCAACGGATGTTGAATTTTTCAGAGCTTTCTTTAAAAATCCACAAAACTTTGTTCTTATTTTCCATGTTTGATTTTTGAGTATTTCGATTTTCTATTGTTTTTTGGATGGGTATGACGTGATTAGGGGGTCAGAATGATGTGTTGATGAGAGAAGAAGACTAGAACACATTGAATACTAAAAATCGATGACGTTGAATGATTATCAAACGGTTATCAGATAGATAGTTGGGTCAGAATTTTAGAAGAGTGCCTCTTTTTTTAAGCTTTCGAGATTTCTAGTTTTTTTTTAATTTTTATAGAAACTTATCATTTCAAACTGATTTGTAATCAGAAAAATCCAATTTACAACAAATCGACCTTTCTTCATAAACCAATTTCTTTGTATCTTAAAGTTTGAAACTTTCAAAAAAGTTTTTCTTAATAACTACAAAATARCAAAAAAAAACGTAAAAATGAACATTTTCACGTATCGAGTTGACCTCAAAACTATGCAGAAATTCATGTCAACAAATGATTTGCATAAAAACGATTTGGCAAACCACGAGGGAAAAATTTGCGTCCTCCAAGTTCCCATACATAAATAGTTCGGTTTCATAATATTATTACTGTGAGACGACTACAGGTTCTCGTTGTTTGCCAGCAAATTTTAGATGAACCTCACTCTATTTCAAAGAACCTGGTCGGCAAACGCGCCCCAGCGAACGTCAAAAATAATTTCGCAACGAGTCAAATTTCGTTGGCTGAGGATCAAACTTTAAAACGTTGAGCGAAAAAAGCAAGCGTTGCAGTGCGTTGATTGAAATTAAATAGGTCAAATCCACGTCAACTTTTAAATTATTTAATTTCGCATGGCCTAAAAGTTTTCTGGGGCTCGGTTTTCGACCCGTTGCTGTGAACCCGTGGATTCTTGCCTTTAAAGGTCCCCTTAGGGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTTCGAGATTTCTAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTTGACATGAATTTCTGCATAGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGCTTTCGAGATTTCTAGTTTTTTTTTAATTTTTATAGAAACTTATCATTTCAAACTGATTTGTAATCAGAAAAATCCAATTTACAACAAATCGACCTTTCTTCATAAACCAATTTCTTTGTATCTTAAAGTTTGAAACTTTCAAAAAAGTTTTTCTTAATAACTACAAAATACCAAAAAAAAACGTAAAAATGAACATTTTCACGTATCGAGTTGACCTCAAAACTATGCAGAAATTCATGTCAAC</canonical_amplicon>
		<polymorphic_amplicon>AAGCTTTCGAGATTTCTAGTTTTTTTTTAATTTTTATAGAAACTTATCATTTCAAACTGATTTGTAATCAGAAAAATCCAATTTACAACAAATCGACCTTTCTTCATAAACCAATTTCTTTGTATCTTAAAGTTTGAAACTTTCAAAAAAGTTTTTCTTAATAACTACAAAATARCAAAAAAAAACGTAAAAATGAACATTTTCACGTATCGAGTTGACCTCAAAACTATGCAGAAATTCATGTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27538</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>587187</contig_pos>
        <strand>+</strand>
        <context>TCCCATACAT[A/T]AATAGTTCGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTGGCAAACCACGAGGGAAAAATTTGCGTCCTCCAAGTTCCCATACAT</left_flank>
        <right_flank>AATAGTTCGGTTTCATAATATTATTACTGTGAGACGACTACAGGTTCTCG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTCGATTTTCTATTGTTTTTTGGATGGGTATGACGTGATTAGGGGGTCAGAATGATGTGTTGATGAGAGAAGAAGACTAGAACACATTGAATACTAAAAATCGATGACGTTGAATGATTATCAAACGGTTATCAGATAGATAGTTGGGTCAGAATTTTAGAAGAGTGCCTCTTTTTTTAAGCTTTCGAGATTTCTAGTTTTTTTTTAATTTTTATAGAAACTTATCATTTCAAACTGATTTGTAATCAGAAAAATCCAATTTACAACAAATCGACCTTTCTTCATAAACCAATTTCTTTGTATCTTAAAGTTTGAAACTTTCAAAAAAGTTTTTCTTAATAACTACAAAATACCAAAAAAAAACGTAAAAATGAACATTTTCACGTATCGAGTTGACCTCAAAACTATGCAGAAATTCATGTCAACAAATGATTTGCATAAAAACGATTTGGCAAACCACGAGGGAAAAATTTGCGTCCTCCAAGTTCCCATACATAAATAGTTCGGTTTCATAATATTATTACTGTGAGACGACTACAGGTTCTCGTTGTTTGCCAGCAAATTTTAGATGAACCTCACTCTATTTCAAAGAACCTGGTCGGCAAACGCGCCCCAGCGAACGTCAAAAATAATTTCGCAACGAGTCAAATTTCGTTGGCTGAGGATCAAACTTTAAAACGTTGAGCGAAAAAAGCAAGCGTTGCAGTGCGTTGATTGAAATTAAATAGGTCAAATCCACGTCAACTTTTAAATTATTTAATTTCGCATGGCCTAAAAGTTTTCTGGGGCTCGGTTTTCGACCCGTTGCTGTGAACCCGTGGATTCTTGCCTTTAAAGGTCCCCTTAGGGAATTCATTTGTTCTAAATTCGTTGAACTTGACATCCTTCTAATTAATTTCTAAATTTCTACATTTCTACTTCTCTCAAAAACTGATTTTGAAGGAACAGTACTAGCTTAAAACAAGTATATTAATTTTGTCTATTTTTTGTTGAAACA</canonical>
            <polymorphic>TATTTCGATTTTCTATTGTTTTTTGGATGGGTATGACGTGATTAGGGGGTCAGAATGATGTGTTGATGAGAGAAGAAGACTAGAACACATTGAATACTAAAAATCGATGACGTTGAATGATTATCAAACGGTTATCAGATAGATAGTTGGGTCAGAATTTTAGAAGAGTGCCTCTTTTTTTAAGCTTTCGAGATTTCTAGTTTTTTTTTAATTTTTATAGAAACTTATCATTTCAAACTGATTTGTAATCAGAAAAATCCAATTTACAACAAATCGACCTTTCTTCATAAACCAATTTCTTTGTATCTTAAAGTTTGAAACTTTCAAAAAAGTTTTTCTTAATAACTACAAAATACCAAAAAAAAACGTAAAAATGAACATTTTCACGTATCGAGTTGACCTCAAAACTATGCAGAAATTCATGTCAACAAATGATTTGCATAAAAACGATTTGGCAAACCACGAGGGAAAAATTTGCGTCCTCCAAGTTCCCATACATWAATAGTTCGGTTTCATAATATTATTACTGTGAGACGACTACAGGTTCTCGTTGTTTGCCAGCAAATTTTAGATGAACCTCACTCTATTTCAAAGAACCTGGTCGGCAAACGCGCCCCAGCGAACGTCAAAAATAATTTCGCAACGAGTCAAATTTCGTTGGCTGAGGATCAAACTTTAAAACGTTGAGCGAAAAAAGCAAGCGTTGCAGTGCGTTGATTGAAATTAAATAGGTCAAATCCACGTCAACTTTTAAATTATTTAATTTCGCATGGCCTAAAAGTTTTCTGGGGCTCGGTTTTCGACCCGTTGCTGTGAACCCGTGGATTCTTGCCTTTAAAGGTCCCCTTAGGGAATTCATTTGTTCTAAATTCGTTGAACTTGACATCCTTCTAATTAATTTCTAAATTTCTACATTTCTACTTCTCTCAAAAACTGATTTTGAAGGAACAGTACTAGCTTAAAACAAGTATATTAATTTTGTCTATTTTTTGTTGAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACCAATTTCTTTGTATCTTAAAGT</pcr_primer_p1>
		<pcr_primer_p2>CAAACAACGAGAACCTGTAGT</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>AAACCAATTTCTTTGTATCTTAAAGTTTGAAACTTTCAAAAAAGTTTTTCTTAATAACTACAAAATACCAAAAAAAAACGTAAAAATGAACATTTTCACGTATCGAGTTGACCTCAAAACTATGCAGAAATTCATGTCAACAAATGATTTGCATAAAAACGATTTGGCAAACCACGAGGGAAAAATTTGCGTCCTCCAAGTTCCCATACATAAATAGTTCGGTTTCATAATATTATTACTGTGAGACGACTACAGGTTCTCGTTGTTTG</canonical_amplicon>
		<polymorphic_amplicon>AAACCAATTTCTTTGTATCTTAAAGTTTGAAACTTTCAAAAAAGTTTTTCTTAATAACTACAAAATACCAAAAAAAAACGTAAAAATGAACATTTTCACGTATCGAGTTGACCTCAAAACTATGCAGAAATTCATGTCAACAAATGATTTGCATAAAAACGATTTGGCAAACCACGAGGGAAAAATTTGCGTCCTCCAAGTTCCCATACATWAATAGTTCGGTTTCATAATATTATTACTGTGAGACGACTACAGGTTCTCGTTGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27539</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>593976</contig_pos>
        <strand>+</strand>
        <context>TAAAATTCTG[C/T]GTACGCAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGCGTACCCAGCGCATTTACTGAATAGTGTGTCTTAAATTAAAATTCTG</left_flank>
        <right_flank>GTACGCAAATGCTCTCTGTCAGGTTGACGCGAAATTGCATGAATTCGGTG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTGAAGGTCCATACAACTGCACCATTCGCCGAAGCGTTTGATGCTCGTGGATGTACCGTAGTCAAATACATCATCTCGATTGGAGCCCTAATCGGACTATCCAACAATTTGGTCACTGGAGTTTTTGCTCTACCAAGAGCTGTTTATGCCATGGCAGATGATGGTCTTCTTTTTGGATGGTTGGCACAAGTAAATTCGTATACAAAGGTTCCATTGAACGCAATTGTGGTGTTTACATTGATCAATGCGGTCATTTCGCTGGTTTTTGATATTGAGGCATTGGTGAGTTGGTTTATACGGTATCTCTTCGTACTTTAACATGTACTGTACTTTGATTCGGTACTGTGCCCTACATAAATTTAGGTCGTGAAATCGGGCCGACCAACCGAATGCCAACCCAACCTTGCTCACCGAATCCTTGCATTTGCGCGTCAATATTCCAGATTGTTTGCGTACCCAGCGCATTTACTGAATAGTGTGTCTTAAATTAAAATTCTGCGTACGCAAATGCTCTCTGTCAGGTTGACGCGAAATTGCATGAATTCGGTGGGCGCGCCGTCCGATCGGTCAGCTCGGTCGGCTGTCTGTCTACTGGGTCGGCGGTCGGTCGGCGGTCGCTGATTTTCGATCAACCGAAATAAGATCCCCAATTCTATCTCATCAAATATTGATCACTTTTACAGGTTGAATTCCTCTCAATCGGAACCCTCTTTGCATATTCGTTCGTCTCCGCTTCTGTCCTTGTCCTTCGCTATCAATCCGCTCCGATCGACGGAGATGAAAAACGAATGGATGGTGGTGGAGAATTAAGCTCATGGATTCCTGCTCGAAACTTTTGGGAATCTCTTCCATCTGGAACATCCATATCTCTAGCTGTTGCTGCATTGATAGCCTCCTTTTTCTGGCTCTCGTTCACATTTAGAACTGGTTTCTATGAAAGTTGGTATGGTCAGGTGTCGGTTGGATTCAATGGATTGTGTATAGTTTTGATAATGGCAT</canonical>
            <polymorphic>CTTGAAGGTCCATACAACTGCACCATTCGCCGAAGCGTTTGATGCTCGTGGATGTACCGTAGTCAAATACATCATCTCGATTGGAGCCCTAATCGGACTATCCAACAATTTGGTCACTGGAGTTTTTGCTCTACCAAGAGCTGTTTATGCCATGGCAGATGATGGTCTTCTTTTTGGATGGTTGGCACAAGTAAATTCGTATACAAAGGTTCCATTGAACGCAATTGTGGTGTTTACATTGATCAATGCGGTCATTTCGCTGGTTTTTGATATTGAGGCATTGGTGAGTTGGTTTATACGGTATCTCTTCGTACTTTAACATGTACTGTACTTTGATTCGGTACTGTGCCCTACATAAATTTAGGTCGTGAAATCGGGCCGACCAACCGAATGCCAACCCAACCTTGCTCACCGAATCCTTGCATTTGCGCGTCAATATTCCAGATTGTTTGCGTACCCAGCGCATTTACTGAATAGTGTGTCTTAAATTAAAATTCTGYGTACGCAAATGCTCTCTGTCAGGTTGACGCGAAATTGCATGAATTCGGTGGGCGCGCCGTCCGATCGGTCAGCTCGGTCGGCTGTCTGTCTACTGGGTCGGCGGTCGGTCGGCGGTCGCTGATTTTCGATCAACCGAAATAAGATCCCCAATTCTATCTCATCAAATATTGATCACTTTTACAGGTTGAATTCCTCTCAATCGGAACCCTCTTTGCATATTCGTTCGTCTCCGCTTCTGTCCTTGTCCTTCGCTATCAATCCGCTCCGATCGACGGAGATGAAAAACGAATGGATGGTGGTGGAGAATTAAGCTCATGGATTCCTGCTCGAAACTTTTGGGAATCTCTTCCATCTGGAACATCCATATCTCTAGCTGTTGCTGCATTGATAGCCTCCTTTTTCTGGCTCTCGTTCACATTTAGAACTGGTTTCTATGAAAGTTGGTATGGTCAGGTGTCGGTTGGATTCAATGGATTGTGTATAGTTTTGATAATGGCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGTACG</site>
                <isoschizomers>
                    <enzyme>BsiWI</enzyme>
                    <enzyme>Pfl23II</enzyme>
                    <enzyme>PspLI</enzyme>
                    <enzyme>SplI</enzyme>
                    <enzyme>SunI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTCAATATTCCAGATTGTTT</pcr_primer_p1>
		<pcr_primer_p2>GGGATCTTATTTCGGTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>218</pcr_amplicon_size>
		<canonical_amplicon>CGTCAATATTCCAGATTGTTTGCGTACCCAGCGCATTTACTGAATAGTGTGTCTTAAATTAAAATTCTGCGTACGCAAATGCTCTCTGTCAGGTTGACGCGAAATTGCATGAATTCGGTGGGCGCGCCGTCCGATCGGTCAGCTCGGTCGGCTGTCTGTCTACTGGGTCGGCGGTCGGTCGGCGGTCGCTGATTTTCGATCAACCGAAATAAGATCCC</canonical_amplicon>
		<polymorphic_amplicon>CGTCAATATTCCAGATTGTTTGCGTACCCAGCGCATTTACTGAATAGTGTGTCTTAAATTAAAATTCTGYGTACGCAAATGCTCTCTGTCAGGTTGACGCGAAATTGCATGAATTCGGTGGGCGCGCCGTCCGATCGGTCAGCTCGGTCGGCTGTCTGTCTACTGGGTCGGCGGTCGGTCGGCGGTCGCTGATTTTCGATCAACCGAAATAAGATCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27540</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>593987</contig_pos>
        <strand>+</strand>
        <context>GTACGCAAAT[A/G]CTCTCTGTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCGCATTTACTGAATAGTGTGTCTTAAATTAAAATTCTGCGTACGCAAAT</left_flank>
        <right_flank>CTCTCTGTCAGGTTGACGCGAAATTGCATGAATTCGGTGGGCGCGCCGTC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATACAACTGCACCATTCGCCGAAGCGTTTGATGCTCGTGGATGTACCGTAGTCAAATACATCATCTCGATTGGAGCCCTAATCGGACTATCCAACAATTTGGTCACTGGAGTTTTTGCTCTACCAAGAGCTGTTTATGCCATGGCAGATGATGGTCTTCTTTTTGGATGGTTGGCACAAGTAAATTCGTATACAAAGGTTCCATTGAACGCAATTGTGGTGTTTACATTGATCAATGCGGTCATTTCGCTGGTTTTTGATATTGAGGCATTGGTGAGTTGGTTTATACGGTATCTCTTCGTACTTTAACATGTACTGTACTTTGATTCGGTACTGTGCCCTACATAAATTTAGGTCGTGAAATCGGGCCGACCAACCGAATGCCAACCCAACCTTGCTCACCGAATCCTTGCATTTGCGCGTCAATATTCCAGATTGTTTGCGTACCCAGCGCATTTACTGAATAGTGTGTCTTAAATTAAAATTCTGCGTACGCAAATGCTCTCTGTCAGGTTGACGCGAAATTGCATGAATTCGGTGGGCGCGCCGTCCGATCGGTCAGCTCGGTCGGCTGTCTGTCTACTGGGTCGGCGGTCGGTCGGCGGTCGCTGATTTTCGATCAACCGAAATAAGATCCCCAATTCTATCTCATCAAATATTGATCACTTTTACAGGTTGAATTCCTCTCAATCGGAACCCTCTTTGCATATTCGTTCGTCTCCGCTTCTGTCCTTGTCCTTCGCTATCAATCCGCTCCGATCGACGGAGATGAAAAACGAATGGATGGTGGTGGAGAATTAAGCTCATGGATTCCTGCTCGAAACTTTTGGGAATCTCTTCCATCTGGAACATCCATATCTCTAGCTGTTGCTGCATTGATAGCCTCCTTTTTCTGGCTCTCGTTCACATTTAGAACTGGTTTCTATGAAAGTTGGTATGGTCAGGTGTCGGTTGGATTCAATGGATTGTGTATAGTTTTGATAATGGCATTTATTTTGGGA</canonical>
            <polymorphic>ATACAACTGCACCATTCGCCGAAGCGTTTGATGCTCGTGGATGTACCGTAGTCAAATACATCATCTCGATTGGAGCCCTAATCGGACTATCCAACAATTTGGTCACTGGAGTTTTTGCTCTACCAAGAGCTGTTTATGCCATGGCAGATGATGGTCTTCTTTTTGGATGGTTGGCACAAGTAAATTCGTATACAAAGGTTCCATTGAACGCAATTGTGGTGTTTACATTGATCAATGCGGTCATTTCGCTGGTTTTTGATATTGAGGCATTGGTGAGTTGGTTTATACGGTATCTCTTCGTACTTTAACATGTACTGTACTTTGATTCGGTACTGTGCCCTACATAAATTTAGGTCGTGAAATCGGGCCGACCAACCGAATGCCAACCCAACCTTGCTCACCGAATCCTTGCATTTGCGCGTCAATATTCCAGATTGTTTGCGTACCCAGCGCATTTACTGAATAGTGTGTCTTAAATTAAAATTCTGCGTACGCAAATRCTCTCTGTCAGGTTGACGCGAAATTGCATGAATTCGGTGGGCGCGCCGTCCGATCGGTCAGCTCGGTCGGCTGTCTGTCTACTGGGTCGGCGGTCGGTCGGCGGTCGCTGATTTTCGATCAACCGAAATAAGATCCCCAATTCTATCTCATCAAATATTGATCACTTTTACAGGTTGAATTCCTCTCAATCGGAACCCTCTTTGCATATTCGTTCGTCTCCGCTTCTGTCCTTGTCCTTCGCTATCAATCCGCTCCGATCGACGGAGATGAAAAACGAATGGATGGTGGTGGAGAATTAAGCTCATGGATTCCTGCTCGAAACTTTTGGGAATCTCTTCCATCTGGAACATCCATATCTCTAGCTGTTGCTGCATTGATAGCCTCCTTTTTCTGGCTCTCGTTCACATTTAGAACTGGTTTCTATGAAAGTTGGTATGGTCAGGTGTCGGTTGGATTCAATGGATTGTGTATAGTTTTGATAATGGCATTTATTTTGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCGCATTTACTGAATAGTG</pcr_primer_p1>
		<pcr_primer_p2>ATTGAGAGGAATTCAACCTGTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CAGCGCATTTACTGAATAGTGTGTCTTAAATTAAAATTCTGCGTACGCAAATGCTCTCTGTCAGGTTGACGCGAAATTGCATGAATTCGGTGGGCGCGCCGTCCGATCGGTCAGCTCGGTCGGCTGTCTGTCTACTGGGTCGGCGGTCGGTCGGCGGTCGCTGATTTTCGATCAACCGAAATAAGATCCCCAATTCTATCTCATCAAATATTGATCACTTTTACAGGTTGAATTCCTCTCAAT</canonical_amplicon>
		<polymorphic_amplicon>CAGCGCATTTACTGAATAGTGTGTCTTAAATTAAAATTCTGCGTACGCAAATRCTCTCTGTCAGGTTGACGCGAAATTGCATGAATTCGGTGGGCGCGCCGTCCGATCGGTCAGCTCGGTCGGCTGTCTGTCTACTGGGTCGGCGGTCGGTCGGCGGTCGCTGATTTTCGATCAACCGAAATAAGATCCCCAATTCTATCTCATCAAATATTGATCACTTTTACAGGTTGAATTCCTCTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27541</snp_id>
        <super_contig>c003200821.Contig2</super_contig>
        <contig_pos>594008</contig_pos>
        <strand>+</strand>
        <context>GGTTGACGCG[A/C]AATTGCATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTTAAATTAAAATTCTGCGTACGCAAATGCTCTCTGTCAGGTTGACGCG</left_flank>
        <right_flank>AATTGCATGAATTCGGTGGGCGCGCCGTCCGATCGGTCAGCTCGGTCGGC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCGTTTGATGCTCGTGGATGTACCGTAGTCAAATACATCATCTCGATTGGAGCCCTAATCGGACTATCCAACAATTTGGTCACTGGAGTTTTTGCTCTACCAAGAGCTGTTTATGCCATGGCAGATGATGGTCTTCTTTTTGGATGGTTGGCACAAGTAAATTCGTATACAAAGGTTCCATTGAACGCAATTGTGGTGTTTACATTGATCAATGCGGTCATTTCGCTGGTTTTTGATATTGAGGCATTGGTGAGTTGGTTTATACGGTATCTCTTCGTACTTTAACATGTACTGTACTTTGATTCGGTACTGTGCCCTACATAAATTTAGGTCGTGAAATCGGGCCGACCAACCGAATGCCAACCCAACCTTGCTCACCGAATCCTTGCATTTGCGCGTCAATATTCCAGATTGTTTGCGTACCCAGCGCATTTACTGAATAGTGTGTCTTAAATTAAAATTCTGCGTACGCAAATGCTCTCTGTCAGGTTGACGCGAAATTGCATGAATTCGGTGGGCGCGCCGTCCGATCGGTCAGCTCGGTCGGCTGTCTGTCTACTGGGTCGGCGGTCGGTCGGCGGTCGCTGATTTTCGATCAACCGAAATAAGATCCCCAATTCTATCTCATCAAATATTGATCACTTTTACAGGTTGAATTCCTCTCAATCGGAACCCTCTTTGCATATTCGTTCGTCTCCGCTTCTGTCCTTGTCCTTCGCTATCAATCCGCTCCGATCGACGGAGATGAAAAACGAATGGATGGTGGTGGAGAATTAAGCTCATGGATTCCTGCTCGAAACTTTTGGGAATCTCTTCCATCTGGAACATCCATATCTCTAGCTGTTGCTGCATTGATAGCCTCCTTTTTCTGGCTCTCGTTCACATTTAGAACTGGTTTCTATGAAAGTTGGTATGGTCAGGTGTCGGTTGGATTCAATGGATTGTGTATAGTTTTGATAATGGCATTTATTTTGGGACATTCTCAAAATTCGTTGAAG</canonical>
            <polymorphic>AAGCGTTTGATGCTCGTGGATGTACCGTAGTCAAATACATCATCTCGATTGGAGCCCTAATCGGACTATCCAACAATTTGGTCACTGGAGTTTTTGCTCTACCAAGAGCTGTTTATGCCATGGCAGATGATGGTCTTCTTTTTGGATGGTTGGCACAAGTAAATTCGTATACAAAGGTTCCATTGAACGCAATTGTGGTGTTTACATTGATCAATGCGGTCATTTCGCTGGTTTTTGATATTGAGGCATTGGTGAGTTGGTTTATACGGTATCTCTTCGTACTTTAACATGTACTGTACTTTGATTCGGTACTGTGCCCTACATAAATTTAGGTCGTGAAATCGGGCCGACCAACCGAATGCCAACCCAACCTTGCTCACCGAATCCTTGCATTTGCGCGTCAATATTCCAGATTGTTTGCGTACCCAGCGCATTTACTGAATAGTGTGTCTTAAATTAAAATTCTGCGTACGCAAATGCTCTCTGTCAGGTTGACGCGMAATTGCATGAATTCGGTGGGCGCGCCGTCCGATCGGTCAGCTCGGTCGGCTGTCTGTCTACTGGGTCGGCGGTCGGTCGGCGGTCGCTGATTTTCGATCAACCGAAATAAGATCCCCAATTCTATCTCATCAAATATTGATCACTTTTACAGGTTGAATTCCTCTCAATCGGAACCCTCTTTGCATATTCGTTCGTCTCCGCTTCTGTCCTTGTCCTTCGCTATCAATCCGCTCCGATCGACGGAGATGAAAAACGAATGGATGGTGGTGGAGAATTAAGCTCATGGATTCCTGCTCGAAACTTTTGGGAATCTCTTCCATCTGGAACATCCATATCTCTAGCTGTTGCTGCATTGATAGCCTCCTTTTTCTGGCTCTCGTTCACATTTAGAACTGGTTTCTATGAAAGTTGGTATGGTCAGGTGTCGGTTGGATTCAATGGATTGTGTATAGTTTTGATAATGGCATTTATTTTGGGACATTCTCAAAATTCGTTGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCATTTACTGAATAGTGTGTCT</pcr_primer_p1>
		<pcr_primer_p2>ATTGAGAGGAATTCAACCTGTA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CGCATTTACTGAATAGTGTGTCTTAAATTAAAATTCTGCGTACGCAAATGCTCTCTGTCAGGTTGACGCGAAATTGCATGAATTCGGTGGGCGCGCCGTCCGATCGGTCAGCTCGGTCGGCTGTCTGTCTACTGGGTCGGCGGTCGGTCGGCGGTCGCTGATTTTCGATCAACCGAAATAAGATCCCCAATTCTATCTCATCAAATATTGATCACTTTTACAGGTTGAATTCCTCTCAAT</canonical_amplicon>
		<polymorphic_amplicon>CGCATTTACTGAATAGTGTGTCTTAAATTAAAATTCTGCGTACGCAAATGCTCTCTGTCAGGTTGACGCGMAATTGCATGAATTCGGTGGGCGCGCCGTCCGATCGGTCAGCTCGGTCGGCTGTCTGTCTACTGGGTCGGCGGTCGGTCGGCGGTCGCTGATTTTCGATCAACCGAAATAAGATCCCCAATTCTATCTCATCAAATATTGATCACTTTTACAGGTTGAATTCCTCTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27542</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>3566</contig_pos>
        <strand></strand>
        <context>TAAATAAGAT[G/A]AGTCAAAATC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGAAACTCAAAAGCCAGCTAATCTAAGATGAAGGAGGGAATAAATAAGAT</left_flank>
        <right_flank>AGTCAAAATCGCATAACAGAAGCTCCAGTTATTTTCAGGTAATATTTGCG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTGAAAATTTTAGAGGATAGAAAACAGACCTAGATCAAAAACTTGGCATTTACAGAAATTTTCGAATATTCTTAGTCTTTCAGTCATTTGACGATTCCTGAGAGACATCCATTTTACAAATATTTTGTGCAATAACGTGAAAAGACGTGTCTCTCATAAATTGACAAATAGCTGAACAACTGTGAATTTTGAAAAAACTTTGTAAATTCAAGTTTTCAATCTAGGTCTGTTTTCTATCCTACGAAGTTTTCAAAGCGATCGGAAACTTCACAACCGAGCTCCAGACTTCTGAAAATACTCAATATTACCGAAAATTGCGTTTTTGGACATCTTGTTGACCGGTGCTGTATAGAAGTTCTGAAATTAGAATCTTCAGGGTTATAACAAGTAATCAGATAATTGCTAACGCTCCTGGAAATTAGAGAGAACATGAAAAATAAGGGTCTTCTGAAACTCAAAAGCCAGCTAATCTAAGATGAAGGAGGGAATAAATAAGATGAGTCAAAATCGCATAACAGAAGCTCCAGTTATTTTCAGGTAATATTTGCGTGGGACTCCCACTACAAAGTAACTAAAATGGATACGAAATCAAACTGGAAGGAAAAAGCCAAAAAAGCAGAAGACCAGCCATTCTGCTCGATGCGTTGAGCAGTTAAATGGGAAGAATGGGAAGGCGGGACGAAAAGGGCTCTGAGACTTTTGACTCCGCCCATCCGCACTGAGCCTTTTTGAGCCAATCGGAAGCACACATTAGACTGAGACTCCGCCTCAAGAGAAGGCGGTATGGAATGTACTAAGCTCGAAATGAGAAACAAGAGATCGGTTGGGTATGAAGAATTTGAAAGTGTGTTTTCGAGATCGGAAAATTTGGAAAAGATAGTAAAAACCTACCCAACAAGAATCCACGATGTTGAGAGGACGTCGATGGTTTTGAGCTACGGACTGGATGAACAACAGACGACGTGGAGGGTTGATCTTCGCTACTACAACCTGGCTCTT</canonical>
            <polymorphic>CTTGAAAATTTTAGAGGATAGAAAACAGACCTAGATCAAAAACTTGGCATTTACAGAAATTTTCGAATATTCTTAGTCTTTCAGTCATTTGACGATTCCTGAGAGACATCCATTTTACAAATATTTTGTGCAATAACGTGAAAAGACGTGTCTCTCATAAATTGACAAATAGCTGAACAACTGTGAATTTTGAAAAAACTTTGTAAATTCAAGTTTTCAATCTAGGTCTGTTTTCTATCCTACGAAGTTTTCAAAGCGATCGGAAACTTCACAACCGAGCTCCAGACTTCTGAAAATACTCAATATTACCGAAAATTGCGTTTTTGGACATCTTGTTGACCGGTGCTGTATAGAAGTTCTGAAATTAGAATCTTCAGGGTTATAACAAGTAATCAGATAATTGCTAACGCTCCTGGAAATTAGAGAGAACATGAAAAATAAGGGTCTTCTGAAACTCAAAAGCCAGCTAATCTAAGATGAAGGAGGGAATAAATAAGATRAGTCAAAATCGCATAACAGAAGCTCCAGTTATTTTCAGGTAATATTTGCGTGGGACTCCCACTACAAAGTAACTAAAATGGATACGAAATCAAACTGGAAGGAAAAAGCCAAAAAAGCAGAAGACCAGCCATTCTGCTCGATGCGTTGAGCAGTTAAATGGGAAGAATGGGAAGGCGGGACGAAAAGGGCTCTGAGACTTTTGACTCCGCCCATCCGCACTGAGCCTTTTTGAGCCAATCGGAAGCACACATTAGACTGAGACTCCGCCTCAAGAGAAGGCGGTATGGAATGTACTAAGCTCGAAATGAGAAACAAGAGATCGGTTGGGTATGAAGAATTTGAAAGTGTGTTTTCGAGATCGGAAAATTTGGAAAAGATAGTAAAAACCTACCCAACAAGAATCCACGATGTTGAGAGGACGTCGATGGTTTTGAGCTACGGACTGGATGAACAACAGACGACGTGGAGGGTTGATCTTCGCTACTACAACCTGGCTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>274 149 139 132 100 94 58 54</canonical_bands>
                <polymorphic_bands>274 186 149 139 100 94 58</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAATTAGAATCTTCAGGGTTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTTCCTTCCAGTTTGATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAAATTAGAATCTTCAGGGTTATAACAAGTAATCAGATAATTGCTAACGCTCCTGGAAATTAGAGAGAACATGAAAAATAAGGGTCTTCTGAAACTCAAAAGCCAGCTAATCTAAGATGAAGGAGGGAATAAATAAGATGAGTCAAAATCGCATAACAGAAGCTCCAGTTATTTTCAGGTAATATTTGCGTGGGACTCCCACTACAAAGTAACTAAAATGGATACGAAATCAAACTGGAAGGAAAAAG</canonical_amplicon>
		<polymorphic_amplicon>TGAAATTAGAATCTTCAGGGTTATAACAAGTAATCAGATAATTGCTAACGCTCCTGGAAATTAGAGAGAACATGAAAAATAAGGGTCTTCTGAAACTCAAAAGCCAGCTAATCTAAGATGAAGGAGGGAATAAATAAGATRAGTCAAAATCGCATAACAGAAGCTCCAGTTATTTTCAGGTAATATTTGCGTGGGACTCCCACTACAAAGTAACTAAAATGGATACGAAATCAAACTGGAAGGAAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27543</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>3717</contig_pos>
        <strand></strand>
        <context>ATGCGTTGAG[C/A]AGTTAAATGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GGAAAAAGCCAAAAAAGCAGAAGACCAGCCATTCTGCTCGATGCGTTGAG</left_flank>
        <right_flank>AGTTAAATGGGAAGAATGGGAAGGCGGGACGAAAAGGGCTCTGAGACTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTCATAAATTGACAAATAGCTGAACAACTGTGAATTTTGAAAAAACTTTGTAAATTCAAGTTTTCAATCTAGGTCTGTTTTCTATCCTACGAAGTTTTCAAAGCGATCGGAAACTTCACAACCGAGCTCCAGACTTCTGAAAATACTCAATATTACCGAAAATTGCGTTTTTGGACATCTTGTTGACCGGTGCTGTATAGAAGTTCTGAAATTAGAATCTTCAGGGTTATAACAAGTAATCAGATAATTGCTAACGCTCCTGGAAATTAGAGAGAACATGAAAAATAAGGGTCTTCTGAAACTCAAAAGCCAGCTAATCTAAGATGAAGGAGGGAATAAATAAGATGAGTCAAAATCGCATAACAGAAGCTCCAGTTATTTTCAGGTAATATTTGCGTGGGACTCCCACTACAAAGTAACTAAAATGGATACGAAATCAAACTGGAAGGAAAAAGCCAAAAAAGCAGAAGACCAGCCATTCTGCTCGATGCGTTGAGCAGTTAAATGGGAAGAATGGGAAGGCGGGACGAAAAGGGCTCTGAGACTTTTGACTCCGCCCATCCGCACTGAGCCTTTTTGAGCCAATCGGAAGCACACATTAGACTGAGACTCCGCCTCAAGAGAAGGCGGTATGGAATGTACTAAGCTCGAAATGAGAAACAAGAGATCGGTTGGGTATGAAGAATTTGAAAGTGTGTTTTCGAGATCGGAAAATTTGGAAAAGATAGTAAAAACCTACCCAACAAGAATCCACGATGTTGAGAGGACGTCGATGGTTTTGAGCTACGGACTGGATGAACAACAGACGACGTGGAGGGTTGATCTTCGCTACTACAACCTGGCTCTTCTGAAATTAAGAACTTTCTAACTTTTCAGATCATCGATTTATTATACCATGATAATCATCGGTATCTTGTTGGTGTTGCTTCTCGGCAATTTTGGTTACAATCAAGTGTCTGTACATACTCTCGCTCATACTTTTCGTATCCATAACAGAT</canonical>
            <polymorphic>CTCTCATAAATTGACAAATAGCTGAACAACTGTGAATTTTGAAAAAACTTTGTAAATTCAAGTTTTCAATCTAGGTCTGTTTTCTATCCTACGAAGTTTTCAAAGCGATCGGAAACTTCACAACCGAGCTCCAGACTTCTGAAAATACTCAATATTACCGAAAATTGCGTTTTTGGACATCTTGTTGACCGGTGCTGTATAGAAGTTCTGAAATTAGAATCTTCAGGGTTATAACAAGTAATCAGATAATTGCTAACGCTCCTGGAAATTAGAGAGAACATGAAAAATAAGGGTCTTCTGAAACTCAAAAGCCAGCTAATCTAAGATGAAGGAGGGAATAAATAAGATGAGTCAAAATCGCATAACAGAAGCTCCAGTTATTTTCAGGTAATATTTGCGTGGGACTCCCACTACAAAGTAACTAAAATGGATACGAAATCAAACTGGAAGGAAAAAGCCAAAAAAGCAGAAGACCAGCCATTCTGCTCGATGCGTTGAGMAGTTAAATGGGAAGAATGGGAAGGCGGGACGAAAAGGGCTCTGAGACTTTTGACTCCGCCCATCCGCACTGAGCCTTTTTGAGCCAATCGGAAGCACACATTAGACTGAGACTCCGCCTCAAGAGAAGGCGGTATGGAATGTACTAAGCTCGAAATGAGAAACAAGAGATCGGTTGGGTATGAAGAATTTGAAAGTGTGTTTTCGAGATCGGAAAATTTGGAAAAGATAGTAAAAACCTACCCAACAAGAATCCACGATGTTGAGAGGACGTCGATGGTTTTGAGCTACGGACTGGATGAACAACAGACGACGTGGAGGGTTGATCTTCGCTACTACAACCTGGCTCTTCTGAAATTAAGAACTTTCTAACTTTTCAGATCATCGATTTATTATACCATGATAATCATCGGTATCTTGTTGGTGTTGCTTCTCGGCAATTTTGGTTACAATCAAGTGTCTGTACATACTCTCGCTCATACTTTTCGTATCCATAACAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCCACTACAAAGTAACTAAAATG</pcr_primer_p1>
		<pcr_primer_p2>TTCGAGCTTAGTACATTCCATAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCCACTACAAAGTAACTAAAATGGATACGAAATCAAACTGGAAGGAAAAAGCCAAAAAAGCAGAAGACCAGCCATTCTGCTCGATGCGTTGAGCAGTTAAATGGGAAGAATGGGAAGGCGGGACGAAAAGGGCTCTGAGACTTTTGACTCCGCCCATCCGCACTGAGCCTTTTTGAGCCAATCGGAAGCACACATTAGACTGAGACTCCGCCTCAAGAGAAGGCGGTATGGAATGTACTAAGCTCGAA</canonical_amplicon>
		<polymorphic_amplicon>TCCCACTACAAAGTAACTAAAATGGATACGAAATCAAACTGGAAGGAAAAAGCCAAAAAAGCAGAAGACCAGCCATTCTGCTCGATGCGTTGAGMAGTTAAATGGGAAGAATGGGAAGGCGGGACGAAAAGGGCTCTGAGACTTTTGACTCCGCCCATCCGCACTGAGCCTTTTTGAGCCAATCGGAAGCACACATTAGACTGAGACTCCGCCTCAAGAGAAGGCGGTATGGAATGTACTAAGCTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27544</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>44320</contig_pos>
        <strand>+</strand>
        <context>GGTATTCAGA[A/G]GTTCGACAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAAGTATTCAAGGAACAGGATGGGGAAAAGCTGAACGGGGGTATTCAGA</left_flank>
        <right_flank>GTTCGACAGGTCAAGATTTGGCGGGGAAAAACTACAATGTGCAATCTATG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGATCGCTATTAATCACCTGCCTGAAGTGCTTTTTCTTACTTATGCTCTACGTCAAACACGGAAAATTTGTTTCAATTAAATAAATTCGGTCTACTGTACAAACTAAAATTTTAAGGCTTGCGACAAGTAGGTGTCAGGTGATTTCTACTCCCACTACGAATTTCAAAAGGTTACTATAATTTGCGTCACAAAAAAATCAGATTTGTTTTTTACTCTGAAAAATTTTCTTCATCAAAACAAAGATTGAGAAGAGGGGCACCTCTTAAAAACAAAACGTCTGAAAAATTATTTTTCGTTATTTTCAATTTTTATTTTAGGTTTATTTATGTACATTTCTGAATACGGCTGTTTTGTCACTGAAAAATAGCAGAAAATCGAGACGGTAAAAGGCACCAAATGAGTCAGGGGCGTGAAAAAAGGCATATTTTTGTGAAAAATTGAGAATTTACAAGTATTCAAGGAACAGGATGGGGAAAAGCTGAACGGGGGTATTCAGAGGTTCGACAGGTCAAGATTTGGCGGGGAAAAACTACAATGTGCAATCTATGCAATGGGGTACGGTATTCGTACAAAATTGTTTTTTTTTCAAGAAGAGAAATGGATGAGAAGAGTGCTTTTACAAAAGTTTGAAATATTCGGATAACTACAAAATGAAGAAACTTAATTAAAGTTTTTTTTTTAAACCAGGGATTGTTATTTTGTACACATATTAGGATTTTTGTAAGAACACGATTTGTAGTCTACGTTTCAAAATATACAACTATAGTGGAAGGAATGAGACAAGTTTTCTAAATCACTACAAGTTTTTGGATGGTGAGAAGAGGATCAGGGGTTTCAGGGGTTCTGTACAAGTTAGCTTTAAGAATGAATTTCCAATAACATATTAATTACAATTTGAGGACTCTGTAAGTTTTGTCATCGAAAACTGAGATGCTCATGTTGGTGTGGAGGCGGATGGTCTCCAGGAGAATCTCCTCGGTACGAGCCATGTTTCTGAG</canonical>
            <polymorphic>CAGATCGCTATTAATCACCTGCCTGAAGTGCTTTTTCTTACTTATGCTCTACGTCAAACACGGAAAATTTGTTTCAATTAAATAAATTCGGTCTACTGTACAAACTAAAATTTTAAGGCTTGCGACAAGTAGGTGTCAGGTGATTTCTACTCCCACTACGAATTTCAAAAGGTTACTATAATTTGCGTCACAAAAAAATCAGATTTGTTTTTTACTCTGAAAAATTTTCTTCATCAAAACAAAGATTGAGAAGAGGGGCACCTCTTAAAAACAAAACGTCTGAAAAATTATTTTTCGTTATTTTCAATTTTTATTTTAGGTTTATTTATGTACATTTCTGAATACGGCTGTTTTGTCACTGAAAAATAGCAGAAAATCGAGACGGTAAAAGGCACCAAATGAGTCAGGGGCGTGAAAAAAGGCATATTTTTGTGAAAAATTGAGAATTTACAAGTATTCAAGGAACAGGATGGGGAAAAGCTGAACGGGGGTATTCAGARGTTCGACAGGTCAAGATTTGGCGGGGAAAAACTACAATGTGCAATCTATGCAATGGGGTACGGTATTCGTACAAAATTGTTTTTTTTTCAAGAAGAGAAATGGATGAGAAGAGTGCTTTTACAAAAGTTTGAAATATTCGGATAACTACAAAATGAAGAAACTTAATTAAAGTTTTTTTTTTAAACCAGGGATTGTTATTTTGTACACATATTAGGATTTTTGTAAGAACACGATTTGTAGTCTACGTTTCAAAATATACAACTATAGTGGAAGGAATGAGACAAGTTTTCTAAATCACTACAAGTTTTTGGATGGTGAGAAGAGGATCAGGGGTTTCAGGGGTTCTGTACAAGTTAGCTTTAAGAATGAATTTCCAATAACATATTAATTACAATTTGAGGACTCTGTAAGTTTTGTCATCGAAAACTGAGATGCTCATGTTGGTGTGGAGGCGGATGGTCTCCAGGAGAATCTCCTCGGTACGAGCCATGTTTCTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAAGGCACCAAATGAGTC</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAACTTTTGTAAAAGCACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAAAAGGCACCAAATGAGTCAGGGGCGTGAAAAAAGGCATATTTTTGTGAAAAATTGAGAATTTACAAGTATTCAAGGAACAGGATGGGGAAAAGCTGAACGGGGGTATTCAGAGGTTCGACAGGTCAAGATTTGGCGGGGAAAAACTACAATGTGCAATCTATGCAATGGGGTACGGTATTCGTACAAAATTGTTTTTTTTTCAAGAAGAGAAATGGATGAGAAGAGTGCTTTTACAAAAGTTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>TAAAAGGCACCAAATGAGTCAGGGGCGTGAAAAAAGGCATATTTTTGTGAAAAATTGAGAATTTACAAGTATTCAAGGAACAGGATGGGGAAAAGCTGAACGGGGGTATTCAGARGTTCGACAGGTCAAGATTTGGCGGGGAAAAACTACAATGTGCAATCTATGCAATGGGGTACGGTATTCGTACAAAATTGTTTTTTTTTCAAGAAGAGAAATGGATGAGAAGAGTGCTTTTACAAAAGTTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27545</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>105144</contig_pos>
        <strand>+</strand>
        <context>TTCAGGAAAG[A/G]GCCCACTCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTGTTTATCTTATTTGACTACACATACAACAATCATTTCAGGAAAG</left_flank>
        <right_flank>GCCCACTCCAAATATATTCAATTATCAATCATATAATCCGGTGAATAAAA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCAAAATTCAACAAAAAAACGAAAATGAAGCGTAGCACGAGAAAAAAGTAATCCTTTCGATGAGAATGTAACGAGTCTAATACATAACCACCGGAAAAGAAAATGGTGGGGATTGTCATTCTTATTTTTCCTTTTCTCGTCGTCATCCCTTAAATTGAGTAATGTACATAACCTGTCTCATAATTGTCCCTTACGCAACCTTCACGATTTCGATTTGGCATGTAGAAGCCGCTAAAAACTTTCAATTCACTTTTCGGACGATTTCGACTTCATCCGAAGGTTACTACATGCTTTTTGTGAGAAATTGAACTGAGATTGGAGAAGGGAAAATGAAAGTGAAAGAAGTACAGAGCTACAGTAAGACTTCTACGCATTATAAAAGTCTTAGAAATATTAATCTGGATTTTACAATTGTCTGATCTACGAAAACGTCATCTTCATACTGTATTTTTTGTTTATCTTATTTGACTACACATACAACAATCATTTCAGGAAAGAGCCCACTCCAAATATATTCAATTATCAATCATATAATCCGGTGAATAAAATGTTGAAGAGTCAAACTGCTGCTCGGCCAATCAGTTATAGTCAAGAATCCGCGTCTACTAATCTTCTTGGTATCATTGATGTGAAAACCAAAGCAGTTCAAAATTTAAGAGGTAACTAGTGATATCAGAAATTGAGCGAATTTTTTTTGTTTCAGATGCTTTGAAACTAACGACCATCAACCGACTTCTAACCACAAGCTACGATGAGGACGCTAAAAATATAGAAGTTGGTGAAAACCCCGGGAAAAATAACTTATTTCCAAAATATTCGGTGGAAGATAGCCAACTTTGATAGCCTAGAAAAATAGTCCAACATTTTTCAAAATGTCTTAGTCCGTTCAAGAGTATACTAAACAAAAAATTGAAGCCTAATTTTTGCAATTAACAAAAAAATGCAATAATTAATAAAAAAATGCAATAATTCGAAAAATGCAATAATTAAGTTGTTTT</canonical>
            <polymorphic>TTTCAAAATTCAACAAAAAAACGAAAATGAAGCGTAGCACGAGAAAAAAGTAATCCTTTCGATGAGAATGTAACGAGTCTAATACATAACCACCGGAAAAGAAAATGGTGGGGATTGTCATTCTTATTTTTCCTTTTCTCGTCGTCATCCCTTAAATTGAGTAATGTACATAACCTGTCTCATAATTGTCCCTTACGCAACCTTCACGATTTCGATTTGGCATGTAGAAGCCGCTAAAAACTTTCAATTCACTTTTCGGACGATTTCGACTTCATCCGAAGGTTACTACATGCTTTTTGTGAGAAATTGAACTGAGATTGGAGAAGGGAAAATGAAAGTGAAAGAAGTACAGAGCTACAGTAAGACTTCTACGCATTATAAAAGTCTTAGAAATATTAATCTGGATTTTACAATTGTCTGATCTACGAAAACGTCATCTTCATACTGTATTTTTTGTTTATCTTATTTGACTACACATACAACAATCATTTCAGGAAAGRGCCCACTCCAAATATATTCAATTATCAATCATATAATCCGGTGAATAAAATGTTGAAGAGTCAAACTGCTGCTCGGCCAATCAGTTATAGTCAAGAATCCGCGTCTACTAATCTTCTTGGTATCATTGATGTGAAAACCAAAGCAGTTCAAAATTTAAGAGGTAACTAGTGATATCAGAAATTGAGCGAATTTTTTTTGTTTCAGATGCTTTGAAACTAACGACCATCAACCGACTTCTAACCACAAGCTACGATGAGGACGCTAAAAATATAGAAGTTGGTGAAAACCCCGGGAAAAATAACTTATTTCCAAAATATTCGGTGGAAGATAGCCAACTTTGATAGCCTAGAAAAATAGTCCAACATTTTTCAAAATGTCTTAGTCCGTTCAAGAGTATACTAAACAAAAAATTGAAGCCTAATTTTTGCAATTAACAAAAAAATGCAATAATTAATAAAAAAATGCAATAATTCGAAAAATGCAATAATTAAGTTGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>230 172 147 124 84 83 75 72 13</canonical_bands>
                <polymorphic_bands>230 222 172 124 84 83 72 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAATTGTCTGATCTACGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CTCTTAAATTTTGAACTGCTTTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACAATTGTCTGATCTACGAAAACGTCATCTTCATACTGTATTTTTTGTTTATCTTATTTGACTACACATACAACAATCATTTCAGGAAAGAGCCCACTCCAAATATATTCAATTATCAATCATATAATCCGGTGAATAAAATGTTGAAGAGTCAAACTGCTGCTCGGCCAATCAGTTATAGTCAAGAATCCGCGTCTACTAATCTTCTTGGTATCATTGATGTGAAAACCAAAGCAGTTCAAAATTTAAGAG</canonical_amplicon>
		<polymorphic_amplicon>ACAATTGTCTGATCTACGAAAACGTCATCTTCATACTGTATTTTTTGTTTATCTTATTTGACTACACATACAACAATCATTTCAGGAAAGRGCCCACTCCAAATATATTCAATTATCAATCATATAATCCGGTGAATAAAATGTTGAAGAGTCAAACTGCTGCTCGGCCAATCAGTTATAGTCAAGAATCCGCGTCTACTAATCTTCTTGGTATCATTGATGTGAAAACCAAAGCAGTTCAAAATTTAAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27546</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>111587</contig_pos>
        <strand>+</strand>
        <context>TGGAGAAAAR[A/G]GATGAAAAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAAAACCACAACACATATTCTCCACAGGTCCAGAAGGGGTGGAGAAAAG</left_flank>
        <right_flank>GATGAAAAGTGCTTGCCGTAGCCGGCTAAATTTTTTTCAGAATGTGTTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGAAAAAACGACAACAGTTAAAGAAAAAAGACCGGGGGTCACTTACACTACAAAACGATTTTTCCAAAAAACCAGTTCGAAACATCCAGGCACGCCAAATTTTTAAAAGTGTGGTTATGGATAAGATGTTTACACATCCGAATTTTGTGAATATTGTTGAAAAATAACTGAACCTATAGAAATGGGTACAAATCTTGTATGTAAAGAATTTAATAGTACTCCACTTCAAAAATCTAAAATTGAGCAAGTTCCGAAGACGAAGATTCTTGTTTTTAATGATAGGATAATGTAAGAACTGTCATAAAAACTATTACTTAATTTTTCATCAAGTTCTCATAAAAATTTAAATTTCTTTGAAATCTTTTACTAAAGACTTCGTAAATTCATCACATCGGCAATAATAGAGTACCCATAGGGCCAAACTCGAAATCAAACATTTGTTTCGAACAAAAACCACAACACATATTCTCCACAGGTCCAGAAGGGGTGGAGAAAAGAGATGAAAAGTGCTTGCCGTAGCCGGCTAAATTTTTTTCAGAATGTGTTACAACCTTCTGGTGAGAACCGGTTACATTTTTTCTCTCATCTCGAAGAGAATTCTCAATGTATAAGTACCCCAATTTTTAGCAAACTCTCGACCAGTATCCTAAAAATGTTCGGAAGATAAAAACGTTTTAAAAAACGAATGTAATGTTAACGTTGGGGATAAAGTAGAATAAAATCAAAGAAGAGGTGTCTCACTATCAACTATCAAAAGCCGAAAAATGATGAAAACAAGTTCAAGTCTGGCGGATGAGAGGAAGTAGCTTTAGATAGTCACAAAATTGTTATAATGAACAAACTTAATGCAAAAAAAAGGGCACACCTTAAAGAATTGAAATACTTTCCACTTAAAAATACAATAATAGTATTCTCAAAATAACCATTCTATTTTTTAGCCGCGGCACCAAAGTCACCAAAAGCAGCACGACTGGTACATGCAATACCTCACAAATGGC</canonical>
            <polymorphic>TTGGAAAAAACGACAACAGTTAAAGAAAAAAGACCGGGGGTCACTTACACTACAAAACGATTTTTCCAAAAAACCAGTTCGAAACATCCAGGCACGCCAAATTTTTAAAAGTGTGGTTATGGATAAGATGTTTACACATCCGAATTTTGTGAATATTGTTGAAAAATAACTGAACCTATAGAAATGGGTACAAATCTTGTATGTAAAGAATTTAATAGTACTCCACTTCAAAAATCTAAAATTGAGCAAGTTCCGAAGACGAAGATTCTTGTTTTTAATGATAGGATAATGTAAGAACTGTCATAAAAACTATTACTTAATTTTTCATCAAGTTCTCATAAAAATTTAAATTTCTTTGAAATCTTTTACTAAAGACTTCGTAAATTCATCACATCGGCAATAATAGAGTACCCATAGGGCCAAACTCGAAATCAAACATTTGTTTCGAACAAAAACCACAACACATATTCTCCACAGGTCCAGAAGGGGTGGAGAAAAGRGATGAAAAGTGCTTGCCGTAGCCGGCTAAATTTTTTTCAGAATGTGTTACAACCTTCTGGTGAGAACCGGTTACATTTTTTCTCTCATCTCGAAGAGAATTCTCAATGTATAAGTACCCCAATTTTTAGCAAACTCTCGACCAGTATCCTAAAAATGTTCGGAAGATAAAAACGTTTTAAAAAACGAATGTAATGTTAACGTTGGGGATAAAGTAGAATAAAATCAAAGAAGAGGTGTCTCACTATCAACTATCAAAAGCCGAAAAATGATGAAAACAAGTTCAAGTCTGGCGGATGAGAGGAAGTAGCTTTAGATAGTCACAAAATTGTTATAATGAACAAACTTAATGCAAAAAAAAGGGCACACCTTAAAGAATTGAAATACTTTCCACTTAAAAATACAATAATAGTATTCTCAAAATAACCATTCTATTTTTTAGCCGCGGCACCAAAGTCACCAAAAGCAGCACGACTGGTACATGCAATACCTCACAAATGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCGAATTTTGTGAATATTGT</pcr_primer_p1>
		<pcr_primer_p2>TCCGAACATTTTTAGGATACTG</pcr_primer_p2>
		<pcr_amplicon_size>526</pcr_amplicon_size>
		<canonical_amplicon>ATCCGAATTTTGTGAATATTGTTGAAAAATAACTGAACCTATAGAAATGGGTACAAATCTTGTATGTAAAGAATTTAATAGTACTCCACTTCAAAAATCTAAAATTGAGCAAGTTCCGAAGACGAAGATTCTTGTTTTTAATGATAGGATAATGTAAGAACTGTCATAAAAACTATTACTTAATTTTTCATCAAGTTCTCATAAAAATTTAAATTTCTTTGAAATCTTTTACTAAAGACTTCGTAAATTCATCACATCGGCAATAATAGAGTACCCATAGGGCCAAACTCGAAATCAAACATTTGTTTCGAACAAAAACCACAACACATATTCTCCACAGGTCCAGAAGGGGTGGAGAAAAGAGATGAAAAGTGCTTGCCGTAGCCGGCTAAATTTTTTTCAGAATGTGTTACAACCTTCTGGTGAGAACCGGTTACATTTTTTCTCTCATCTCGAAGAGAATTCTCAATGTATAAGTACCCCAATTTTTAGCAAACTCTCGACCAGTATCCTAAAAATGTTCGGA</canonical_amplicon>
		<polymorphic_amplicon>ATCCGAATTTTGTGAATATTGTTGAAAAATAACTGAACCTATAGAAATGGGTACAAATCTTGTATGTAAAGAATTTAATAGTACTCCACTTCAAAAATCTAAAATTGAGCAAGTTCCGAAGACGAAGATTCTTGTTTTTAATGATAGGATAATGTAAGAACTGTCATAAAAACTATTACTTAATTTTTCATCAAGTTCTCATAAAAATTTAAATTTCTTTGAAATCTTTTACTAAAGACTTCGTAAATTCATCACATCGGCAATAATAGAGTACCCATAGGGCCAAACTCGAAATCAAACATTTGTTTCGAACAAAAACCACAACACATATTCTCCACAGGTCCAGAAGGGGTGGAGAAAAGRGATGAAAAGTGCTTGCCGTAGCCGGCTAAATTTTTTTCAGAATGTGTTACAACCTTCTGGTGAGAACCGGTTACATTTTTTCTCTCATCTCGAAGAGAATTCTCAATGTATAAGTACCCCAATTTTTAGCAAACTCTCGACCAGTATCCTAAAAATGTTCGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27547</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>142850</contig_pos>
        <strand>+</strand>
        <context>TGGAAACAAA[A/G]YTTTCAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATAATAATTCAGAAAATAGGAGTTGTTTTCTTCGATTCCTGGAAACAAA</left_flank>
        <right_flank>TTTTCAAAAATTCAGTTTATTTTTAACAAAAAATTACCAGTTTGTTGCGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTCATTGAATTTGTCAGTCACAAGTTACCCTGATTACCACAACGGACCTATTGATACCAGCTCGTTCAAATGGGTTAGTAAAAGTACCCACCCCAATCTGTACAAAGACGACAGTCGCCGGTTCACGAAAGAGGAGTTGGAGGATTACAAAGATAGATTCCCCTAAAATCATATAGTTTCAATATTTGATTTGGATCCCACAATAATGAACCATGTTTTATATTTGAACAGAACCAACGAAATTAGTATTTTTTTGGACTTTCAGCAAAGTTCCAATCAGATTTATATTTCTTATTCTTCGAAATCCATTCTCGTAGTTGGTATTTTCTTTTAGTTTCTTGAATAAATTTTTTTTTGAAAAATCGAGAATTAGATTTTTAAGTTTTGTCGCTGTGAATCGGGACGAATACGAGAGAAGAGGATCTGCCTGAAATGTAAATAAAATAAGATAATAATTCAGAAAATAGGAGTTGTTTTCTTCGATTCCTGGAAACAAAATTTTCAAAAATTCAGTTTATTTTTAACAAAAAATTACCAGTTTGTTGCGATATTTCCCAACCACTTGGCATTAAAAGTTGACCTGAATTTCATTTTTCTGAAAAATTTAAATAATATGACAGGAATTCAAAGAAAGAATTACCCGATAAGTTTCGTACTCTTTTTTCGAGAACAACTGTTTCATACAGATTCATGCAAATGAGGTACAGGGCTGAAAACCGAATAAGCGCAAACTGCAGATGAGAGTTCTGAGTTAACATTCGCGACCCGTTGAAGCAAAATAACTTTTTTGGATGGAGTCATGATAAAATCTTGCTAACTAAGAAATTAAAGTTCTATTTATGGTAAATAAATGTGAAAAACTTCAAATGTATCTCGCCATATTTACTATATTTTCGACTTACCTTGAGTTAGCTTCAATAAACTCATATGATTAACTTTTGCACTCTTTTATCAGTACTTTCTTTGGAAAACTCTTTGATCAGTACTTTCTTTGGAAA</canonical>
            <polymorphic>TACTCATTGAATTTGTCAGTCACAAGTTACCCTGATTACCACAACGGACCTATTGATACCAGCTCGTTCAAATGGGTTAGTAAAAGTACCCACCCCAATCTGTACAAAGACGACAGTCGCCGGTTCACGAAAGAGGAGTTGGAGGATTACAAAGATAGATTCCCCTAAAATCATATAGTTTCAATATTTGATTTGGATCCCACAATAATGAACCATGTTTTATATTTGAACAGAACCAACGAAATTAGTATTTTTTTGGACTTTCAGCAAAGTTCCAATCAGATTTATATTTCTTATTCTTCGAAATCCATTCTCGTAGTTGGTATTTTCTTTTAGTTTCTTGAATAAATTTTTTTTTGAAAAATCGAGAATTAGATTTTTAAGTTTTGTCGCTGTGAATCGGGACGAATACGAGAGAAGAGGATCTGCCTGAAATGTAAATAAAATAAGATAATAATTCAGAAAATAGGAGTTGTTTTCTTCGATTCCTGGAAACAAARTTTTCAAAAATTCAGTTTATTTTTAACAAAAAATTACCAGTTTGTTGCGATATTTCCCAACCACTTGGCATTAAAAGTTGACCTGAATTTCATTTTTCTGAAAAATTTAAATAATATGACAGGAATTCAAAGAAAGAATTACCCGATAAGTTTCGTACTCTTTTTTCGAGAACAACTGTTTCATACAGATTCATGCAAATGAGGTACAGGGCTGAAAACCGAATAAGCGCAAACTGCAGATGAGAGTTCTGAGTTAACATTCGCGACCCGTTGAAGCAAAATAACTTTTTTGGATGGAGTCATGATAAAATCTTGCTAACTAAGAAATTAAAGTTCTATTTATGGTAAATAAATGTGAAAAACTTCAAATGTATCTCGCCATATTTACTATATTTTCGACTTACCTTGAGTTAGCTTCAATAAACTCATATGATTAACTTTTGCACTCTTTTATCAGTACTTTCTTTGGAAAACTCTTTGATCAGTACTTTCTTTGGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>377 338 151 77 20 18 10 9</canonical_bands>
                <polymorphic_bands>377 338 161 77 20 18 9</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>233 189 175 105 86 54 43 23 22 20 18 13 10 9</canonical_bands>
                <polymorphic_bands>233 189 175 105 86 54 53 23 22 20 18 13 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATACGAGAGAAGAGGATCTG</pcr_primer_p1>
		<pcr_primer_p2>GAAACTTATCGGGTAATTCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAATACGAGAGAAGAGGATCTGCCTGAAATGTAAATAAAATAAGATAATAATTCAGAAAATAGGAGTTGTTTTCTTCGATTCCTGGAAACAAAATTTTCAAAAATTCAGTTTATTTTTAACAAAAAATTACCAGTTTGTTGCGATATTTCCCAACCACTTGGCATTAAAAGTTGACCTGAATTTCATTTTTCTGAAAAATTTAAATAATATGACAGGAATTCAAAGAAAGAATTACCCGATAAGTTTC</canonical_amplicon>
		<polymorphic_amplicon>GAATACGAGAGAAGAGGATCTGCCTGAAATGTAAATAAAATAAGATAATAATTCAGAAAATAGGAGTTGTTTTCTTCGATTCCTGGAAACAAARTTTTCAAAAATTCAGTTTATTTTTAACAAAAAATTACCAGTTTGTTGCGATATTTCCCAACCACTTGGCATTAAAAGTTGACCTGAATTTCATTTTTCTGAAAAATTTAAATAATATGACAGGAATTCAAAGAAAGAATTACCCGATAAGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27548</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>142851</contig_pos>
        <strand>+</strand>
        <context>GGAAACAAAR[C/T]TTTCAAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAATAATTCAGAAAATAGGAGTTGTTTTCTTCGATTCCTGGAAACAAAA</left_flank>
        <right_flank>TTTCAAAAATTCAGTTTATTTTTAACAAAAAATTACCAGTTTGTTGCGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCATTGAATTTGTCAGTCACAAGTTACCCTGATTACCACAACGGACCTATTGATACCAGCTCGTTCAAATGGGTTAGTAAAAGTACCCACCCCAATCTGTACAAAGACGACAGTCGCCGGTTCACGAAAGAGGAGTTGGAGGATTACAAAGATAGATTCCCCTAAAATCATATAGTTTCAATATTTGATTTGGATCCCACAATAATGAACCATGTTTTATATTTGAACAGAACCAACGAAATTAGTATTTTTTTGGACTTTCAGCAAAGTTCCAATCAGATTTATATTTCTTATTCTTCGAAATCCATTCTCGTAGTTGGTATTTTCTTTTAGTTTCTTGAATAAATTTTTTTTTGAAAAATCGAGAATTAGATTTTTAAGTTTTGTCGCTGTGAATCGGGACGAATACGAGAGAAGAGGATCTGCCTGAAATGTAAATAAAATAAGATAATAATTCAGAAAATAGGAGTTGTTTTCTTCGATTCCTGGAAACAAAATTTTCAAAAATTCAGTTTATTTTTAACAAAAAATTACCAGTTTGTTGCGATATTTCCCAACCACTTGGCATTAAAAGTTGACCTGAATTTCATTTTTCTGAAAAATTTAAATAATATGACAGGAATTCAAAGAAAGAATTACCCGATAAGTTTCGTACTCTTTTTTCGAGAACAACTGTTTCATACAGATTCATGCAAATGAGGTACAGGGCTGAAAACCGAATAAGCGCAAACTGCAGATGAGAGTTCTGAGTTAACATTCGCGACCCGTTGAAGCAAAATAACTTTTTTGGATGGAGTCATGATAAAATCTTGCTAACTAAGAAATTAAAGTTCTATTTATGGTAAATAAATGTGAAAAACTTCAAATGTATCTCGCCATATTTACTATATTTTCGACTTACCTTGAGTTAGCTTCAATAAACTCATATGATTAACTTTTGCACTCTTTTATCAGTACTTTCTTTGGAAAACTCTTTGATCAGTACTTTCTTTGGAAAA</canonical>
            <polymorphic>ACTCATTGAATTTGTCAGTCACAAGTTACCCTGATTACCACAACGGACCTATTGATACCAGCTCGTTCAAATGGGTTAGTAAAAGTACCCACCCCAATCTGTACAAAGACGACAGTCGCCGGTTCACGAAAGAGGAGTTGGAGGATTACAAAGATAGATTCCCCTAAAATCATATAGTTTCAATATTTGATTTGGATCCCACAATAATGAACCATGTTTTATATTTGAACAGAACCAACGAAATTAGTATTTTTTTGGACTTTCAGCAAAGTTCCAATCAGATTTATATTTCTTATTCTTCGAAATCCATTCTCGTAGTTGGTATTTTCTTTTAGTTTCTTGAATAAATTTTTTTTTGAAAAATCGAGAATTAGATTTTTAAGTTTTGTCGCTGTGAATCGGGACGAATACGAGAGAAGAGGATCTGCCTGAAATGTAAATAAAATAAGATAATAATTCAGAAAATAGGAGTTGTTTTCTTCGATTCCTGGAAACAAAAYTTTCAAAAATTCAGTTTATTTTTAACAAAAAATTACCAGTTTGTTGCGATATTTCCCAACCACTTGGCATTAAAAGTTGACCTGAATTTCATTTTTCTGAAAAATTTAAATAATATGACAGGAATTCAAAGAAAGAATTACCCGATAAGTTTCGTACTCTTTTTTCGAGAACAACTGTTTCATACAGATTCATGCAAATGAGGTACAGGGCTGAAAACCGAATAAGCGCAAACTGCAGATGAGAGTTCTGAGTTAACATTCGCGACCCGTTGAAGCAAAATAACTTTTTTGGATGGAGTCATGATAAAATCTTGCTAACTAAGAAATTAAAGTTCTATTTATGGTAAATAAATGTGAAAAACTTCAAATGTATCTCGCCATATTTACTATATTTTCGACTTACCTTGAGTTAGCTTCAATAAACTCATATGATTAACTTTTGCACTCTTTTATCAGTACTTTCTTTGGAAAACTCTTTGATCAGTACTTTCTTTGGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>378 338 151 77 20 18 10 8</canonical_bands>
                <polymorphic_bands>378 338 161 77 20 18 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>233 189 176 105 86 54 43 23 22 20 18 13 10 8</canonical_bands>
                <polymorphic_bands>233 189 176 105 86 54 53 23 22 20 18 13 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATACGAGAGAAGAGGATCTG</pcr_primer_p1>
		<pcr_primer_p2>GAAACTTATCGGGTAATTCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAATACGAGAGAAGAGGATCTGCCTGAAATGTAAATAAAATAAGATAATAATTCAGAAAATAGGAGTTGTTTTCTTCGATTCCTGGAAACAAAATTTTCAAAAATTCAGTTTATTTTTAACAAAAAATTACCAGTTTGTTGCGATATTTCCCAACCACTTGGCATTAAAAGTTGACCTGAATTTCATTTTTCTGAAAAATTTAAATAATATGACAGGAATTCAAAGAAAGAATTACCCGATAAGTTTC</canonical_amplicon>
		<polymorphic_amplicon>GAATACGAGAGAAGAGGATCTGCCTGAAATGTAAATAAAATAAGATAATAATTCAGAAAATAGGAGTTGTTTTCTTCGATTCCTGGAAACAAAAYTTTCAAAAATTCAGTTTATTTTTAACAAAAAATTACCAGTTTGTTGCGATATTTCCCAACCACTTGGCATTAAAAGTTGACCTGAATTTCATTTTTCTGAAAAATTTAAATAATATGACAGGAATTCAAAGAAAGAATTACCCGATAAGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27549</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>144062</contig_pos>
        <strand>+</strand>
        <context>CTTTTTACAG[C/T]GAAGAAATCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGGAAACATCACTTTTTAGCGGAAAATTTGAATATCTACTTTTTACAG</left_flank>
        <right_flank>GAAGAAATCGTGATGATGGCAAGATTTTTGAAGTGGCTCCATAATTATGG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGCAAATAAAATGATTTCAAACTGTGGATAATTATTTGTTTTCTCACTTCTATAGCACAGATGACGATTGCTTCGTAGTCCTCCTCGGAGTTCTTCTCTGAATAATCGAAGACCGAGAGCAGTGGGTCGTAGTATTCCGACCCGACCCCATTTACTGCAAAAGTCTCGAATTTGATTCCTTTGGAGNNNNNNNNNNTGCTGCTATCATGATGAACAATTTATCAGTTGACACATTTTTTATATCTTTATCAGGAACCGAGATAATTGAGCTCAAAGTTGAAAGTCCGGGGGCACTTCTATTACAGGTTTTACGGTACCTTATAAAATCCTAAAAAAATTTGGAAAAGGAAAAAAATTGTTTTTTGCAAACCTTCCATTTTTTTTGAAAAAAATTTCGAAAATCATTTCTAACAGAAAACTTTTCTACTGAAATTAGATTAGAAATTGCTTTGGAAACATCACTTTTTAGCGGAAAATTTGAATATCTACTTTTTACAGCGAAGAAATCGTGATGATGGCAAGATTTTTGAAGTGGCTCCATAATTATGGCGCAATGAAAAATGAACTTTTTTGACATTGTTTAATTTTTTCAAACCGTTGCTTCACTATCTAAAATTGAATGTTATTTACATTTTCAGATTCGAGGATGATATTTATCGCCATTGGAAAGGATTCTGAAACTTTCATGAATATCAGAAAAATTACAAAAATTGAAGTGGCTCCATAATTTTGGCGCGCAGTGTATAGGAGGCTTTCTGTATAAGTCCTTAGAACAAGCCAATAACCAACAGATCATCTGAAGCTACATATGAGCAACATGTCTAGTTTTTTTTCGGAATGTTTTACGCTGTTTCAGGCAATGCCAATTTTTTCATTACTTCAAATATTGAGTGGTCAATAAAAAAAAGATAGGAGATTTACCGAAGTTTTTTTTTCGAAAAAACGGGCGAAAAATCTACAATAAACCTTTTGATTTCGAAACAGATATTATAACAACTG</canonical>
            <polymorphic>CTGCAAATAAAATGATTTCAAACTGTGGATAATTATTTGTTTTCTCACTTCTATAGCACAGATGACGATTGCTTCGTAGTCCTCCTCGGAGTTCTTCTCTGAATAATCGAAGACCGAGAGCAGTGGGTCGTAGTATTCCGACCCGACCCCATTTACTGCAAAAGTCTCGAATTTGATTCCTTTGGAGNNNNNNNNNNTGCTGCTATCATGATGAACAATTTATCAGTTGACACATTTTTTATATCTTTATCAGGAACCGAGATAATTGAGCTCAAAGTTGAAAGTCCGGGGGCACTTCTATTACAGGTTTTACGGTACCTTATAAAATCCTAAAAAAATTTGGAAAAGGAAAAAAATTGTTTTTTGCAAACCTTCCATTTTTTTTGAAAAAAATTTCGAAAATCATTTCTAACAGAAAACTTTTCTACTGAAATTAGATTAGAAATTGCTTTGGAAACATCACTTTTTAGCGGAAAATTTGAATATCTACTTTTTACAGYGAAGAAATCGTGATGATGGCAAGATTTTTGAAGTGGCTCCATAATTATGGCGCAATGAAAAATGAACTTTTTTGACATTGTTTAATTTTTTCAAACCGTTGCTTCACTATCTAAAATTGAATGTTATTTACATTTTCAGATTCGAGGATGATATTTATCGCCATTGGAAAGGATTCTGAAACTTTCATGAATATCAGAAAAATTACAAAAATTGAAGTGGCTCCATAATTTTGGCGCGCAGTGTATAGGAGGCTTTCTGTATAAGTCCTTAGAACAAGCCAATAACCAACAGATCATCTGAAGCTACATATGAGCAACATGTCTAGTTTTTTTTCGGAATGTTTTACGCTGTTTCAGGCAATGCCAATTTTTTCATTACTTCAAATATTGAGTGGTCAATAAAAAAAAGATAGGAGATTTACCGAAGTTTTTTTTTCGAAAAAACGGGCGAAAAATCTACAATAAACCTTTTGATTTCGAAACAGATATTATAACAACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCGAAAATCATTTCTAACAGA</pcr_primer_p1>
		<pcr_primer_p2>CCTCGAATCTGAAAATGTAAATA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTTCGAAAATCATTTCTAACAGAAAACTTTTCTACTGAAATTAGATTAGAAATTGCTTTGGAAACATCACTTTTTAGCGGAAAATTTGAATATCTACTTTTTACAGCGAAGAAATCGTGATGATGGCAAGATTTTTGAAGTGGCTCCATAATTATGGCGCAATGAAAAATGAACTTTTTTGACATTGTTTAATTTTTTCAAACCGTTGCTTCACTATCTAAAATTGAATGTTATTTACATTTTCAGATTCGAGG</canonical_amplicon>
		<polymorphic_amplicon>TTTCGAAAATCATTTCTAACAGAAAACTTTTCTACTGAAATTAGATTAGAAATTGCTTTGGAAACATCACTTTTTAGCGGAAAATTTGAATATCTACTTTTTACAGYGAAGAAATCGTGATGATGGCAAGATTTTTGAAGTGGCTCCATAATTATGGCGCAATGAAAAATGAACTTTTTTGACATTGTTTAATTTTTTCAAACCGTTGCTTCACTATCTAAAATTGAATGTTATTTACATTTTCAGATTCGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27550</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>144253</contig_pos>
        <strand>+</strand>
        <context>ACTTTCATGA[A/G]TATCAGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGAGGATGATATTTATCGCCATTGGAAAGGATTCTGAAACTTTCATGA</left_flank>
        <right_flank>TATCAGAAAAATTACAAAAATTGAAGTGGCTCCATAATTTTGGCGCGCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NNNNNNTGCTGCTATCATGATGAACAATTTATCAGTTGACACATTTTTTATATCTTTATCAGGAACCGAGATAATTGAGCTCAAAGTTGAAAGTCCGGGGGCACTTCTATTACAGGTTTTACGGTACCTTATAAAATCCTAAAAAAATTTGGAAAAGGAAAAAAATTGTTTTTTGCAAACCTTCCATTTTTTTTGAAAAAAATTTCGAAAATCATTTCTAACAGAAAACTTTTCTACTGAAATTAGATTAGAAATTGCTTTGGAAACATCACTTTTTAGCGGAAAATTTGAATATCTACTTTTTACAGCGAAGAAATCGTGATGATGGCAAGATTTTTGAAGTGGCTCCATAATTATGGCGCAATGAAAAATGAACTTTTTTGACATTGTTTAATTTTTTCAAACCGTTGCTTCACTATCTAAAATTGAATGTTATTTACATTTTCAGATTCGAGGATGATATTTATCGCCATTGGAAAGGATTCTGAAACTTTCATGAATATCAGAAAAATTACAAAAATTGAAGTGGCTCCATAATTTTGGCGCGCAGTGTATAGGAGGCTTTCTGTATAAGTCCTTAGAACAAGCCAATAACCAACAGATCATCTGAAGCTACATATGAGCAACATGTCTAGTTTTTTTTCGGAATGTTTTACGCTGTTTCAGGCAATGCCAATTTTTTCATTACTTCAAATATTGAGTGGTCAATAAAAAAAAGATAGGAGATTTACCGAAGTTTTTTTTTCGAAAAAACGGGCGAAAAATCTACAATAAACCTTTTGATTTCGAAACAGATATTATAACAACTGTTTATTCAGAAAATTGTCATTTCAATTGTTCAAATTACAGGTTCCTCGCTGTATAATCAGCTATGGCATTCTGAAAGTCAATATGAACACTGGTTCTCCAGATTCGTGCTCAGAACAAGAAAAAATTCACATGTTCCATATCGAAACACAGAACAGGCAAAAAAAAACTAGAGAGCAACTTTTGTTAGCTC</canonical>
            <polymorphic>NNNNNNTGCTGCTATCATGATGAACAATTTATCAGTTGACACATTTTTTATATCTTTATCAGGAACCGAGATAATTGAGCTCAAAGTTGAAAGTCCGGGGGCACTTCTATTACAGGTTTTACGGTACCTTATAAAATCCTAAAAAAATTTGGAAAAGGAAAAAAATTGTTTTTTGCAAACCTTCCATTTTTTTTGAAAAAAATTTCGAAAATCATTTCTAACAGAAAACTTTTCTACTGAAATTAGATTAGAAATTGCTTTGGAAACATCACTTTTTAGCGGAAAATTTGAATATCTACTTTTTACAGCGAAGAAATCGTGATGATGGCAAGATTTTTGAAGTGGCTCCATAATTATGGCGCAATGAAAAATGAACTTTTTTGACATTGTTTAATTTTTTCAAACCGTTGCTTCACTATCTAAAATTGAATGTTATTTACATTTTCAGATTCGAGGATGATATTTATCGCCATTGGAAAGGATTCTGAAACTTTCATGARTATCAGAAAAATTACAAAAATTGAAGTGGCTCCATAATTTTGGCGCGCAGTGTATAGGAGGCTTTCTGTATAAGTCCTTAGAACAAGCCAATAACCAACAGATCATCTGAAGCTACATATGAGCAACATGTCTAGTTTTTTTTCGGAATGTTTTACGCTGTTTCAGGCAATGCCAATTTTTTCATTACTTCAAATATTGAGTGGTCAATAAAAAAAAGATAGGAGATTTACCGAAGTTTTTTTTTCGAAAAAACGGGCGAAAAATCTACAATAAACCTTTTGATTTCGAAACAGATATTATAACAACTGTTTATTCAGAAAATTGTCATTTCAATTGTTCAAATTACAGGTTCCTCGCTGTATAATCAGCTATGGCATTCTGAAAGTCAATATGAACACTGGTTCTCCAGATTCGTGCTCAGAACAAGAAAAAATTCACATGTTCCATATCGAAACACAGAACAGGCAAAAAAAAACTAGAGAGCAACTTTTGTTAGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGATGGCAAGATTTTTGA</pcr_primer_p1>
		<pcr_primer_p2>TACAGAAAGCCTCCTATACACTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATGATGGCAAGATTTTTGAAGTGGCTCCATAATTATGGCGCAATGAAAAATGAACTTTTTTGACATTGTTTAATTTTTTCAAACCGTTGCTTCACTATCTAAAATTGAATGTTATTTACATTTTCAGATTCGAGGATGATATTTATCGCCATTGGAAAGGATTCTGAAACTTTCATGAATATCAGAAAAATTACAAAAATTGAAGTGGCTCCATAATTTTGGCGCGCAGTGTATAGGAGGCTTTCTGTA</canonical_amplicon>
		<polymorphic_amplicon>GATGATGGCAAGATTTTTGAAGTGGCTCCATAATTATGGCGCAATGAAAAATGAACTTTTTTGACATTGTTTAATTTTTTCAAACCGTTGCTTCACTATCTAAAATTGAATGTTATTTACATTTTCAGATTCGAGGATGATATTTATCGCCATTGGAAAGGATTCTGAAACTTTCATGARTATCAGAAAAATTACAAAAATTGAAGTGGCTCCATAATTTTGGCGCGCAGTGTATAGGAGGCTTTCTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27551</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>145090</contig_pos>
        <strand>+</strand>
        <context>CTTTATTATT[G/T]GTCTTCTCCC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTACTCCAATTTTCAGACTCTTCAAATGTATAATGTCTGCTTTATTATT</left_flank>
        <right_flank>GTCTTCTCCCGCCCCTTTTAGTCCGCGCTCCTTTTACATTTCGGCGCCGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAAATTACAGGTTCCTCGCTGTATAATCAGCTATGGCATTCTGAAAGTCAATATGAACACTGGTTCTCCAGATTCGTGCTCAGAACAAGAAAAAATTCACATGTTCCATATCGAAACACAGAACAGGCAAAAAAAAACTAGAGAGCAACTTTTGTTAGCTCTGTAGAAAACTGCCTCTTCTTTGTTCATATCGCATATTGAATATGTTTCTCGTACATTTCCTGGTTTCGTGTTTCTGTAAAACTCGAACTCTTTCAGTGATTAGTAGTCACACTTTTGCAGATAGTTCGTAAGATCAACAATGTGAACAACGAACATTTTCAGAAGAATATGGAACAGAGTTCAAAAATGAATATGGAACAGAGTTCAAAAATGTGTGCGAACGAACAACGAACCACCGCATGCCAGTCAACGTGCCAGACAGCGTGACAGTCTCCTTAATCTCTAACTACTCCAATTTTCAGACTCTTCAAATGTATAATGTCTGCTTTATTATTTGTCTTCTCCCGCCCCTTTTAGTCCGCGCTCCTTTTACATTTCGGCGCCGCCTCTGGGAGATTTTTAGTATAAAAGAAAGAGAGCACTGAAGTTCTTATCACAACTCTTATGGGCACCACTGCTCATATAATACATTGCACAAATTATTCTGCTCTTCTTGCCTTCCTTCTCACTAAACCTTAATTTGAAACTTTCAGACATGCGTTTGTTCATCATTGCTACGATTATCATTGCTTTCGTTGTCGTCTCTGGTGAGGACAACTCTACTGATTCCGTCACCTCTGAAATCAATTCTACTGCAGCAGTCTCTTCAGACAAAATCGCCTCTACATTTGAAAACATTGATGACTCTTTCTCAGATGACTTCTTCTCCGATGAAACCATCACCTCCATCATCACCAACGCTCATGGAATCGGCACTTTCCAGGTTTCTTCGGCTGTCTACTCTGATTCTATAGAAGAGCAGGGAATCAACACTTTCCAATCTCGAGGAACACTCG</canonical>
            <polymorphic>TTCAAATTACAGGTTCCTCGCTGTATAATCAGCTATGGCATTCTGAAAGTCAATATGAACACTGGTTCTCCAGATTCGTGCTCAGAACAAGAAAAAATTCACATGTTCCATATCGAAACACAGAACAGGCAAAAAAAAACTAGAGAGCAACTTTTGTTAGCTCTGTAGAAAACTGCCTCTTCTTTGTTCATATCGCATATTGAATATGTTTCTCGTACATTTCCTGGTTTCGTGTTTCTGTAAAACTCGAACTCTTTCAGTGATTAGTAGTCACACTTTTGCAGATAGTTCGTAAGATCAACAATGTGAACAACGAACATTTTCAGAAGAATATGGAACAGAGTTCAAAAATGAATATGGAACAGAGTTCAAAAATGTGTGCGAACGAACAACGAACCACCGCATGCCAGTCAACGTGCCAGACAGCGTGACAGTCTCCTTAATCTCTAACTACTCCAATTTTCAGACTCTTCAAATGTATAATGTCTGCTTTATTATTKGTCTTCTCCCGCCCCTTTTAGTCCGCGCTCCTTTTACATTTCGGCGCCGCCTCTGGGAGATTTTTAGTATAAAAGAAAGAGAGCACTGAAGTTCTTATCACAACTCTTATGGGCACCACTGCTCATATAATACATTGCACAAATTATTCTGCTCTTCTTGCCTTCCTTCTCACTAAACCTTAATTTGAAACTTTCAGACATGCGTTTGTTCATCATTGCTACGATTATCATTGCTTTCGTTGTCGTCTCTGGTGAGGACAACTCTACTGATTCCGTCACCTCTGAAATCAATTCTACTGCAGCAGTCTCTTCAGACAAAATCGCCTCTACATTTGAAAACATTGATGACTCTTTCTCAGATGACTTCTTCTCCGATGAAACCATCACCTCCATCATCACCAACGCTCATGGAATCGGCACTTTCCAGGTTTCTTCGGCTGTCTACTCTGATTCTATAGAAGAGCAGGGAATCAACACTTTCCAATCTCGAGGAACACTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCAAAAATGAATATGGAACAG</pcr_primer_p1>
		<pcr_primer_p2>ACTTCAGTGCTCTCTTTCTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTCAAAAATGAATATGGAACAGAGTTCAAAAATGTGTGCGAACGAACAACGAACCACCGCATGCCAGTCAACGTGCCAGACAGCGTGACAGTCTCCTTAATCTCTAACTACTCCAATTTTCAGACTCTTCAAATGTATAATGTCTGCTTTATTATTTGTCTTCTCCCGCCCCTTTTAGTCCGCGCTCCTTTTACATTTCGGCGCCGCCTCTGGGAGATTTTTAGTATAAAAGAAAGAGAGCACTGAAGT</canonical_amplicon>
		<polymorphic_amplicon>GTTCAAAAATGAATATGGAACAGAGTTCAAAAATGTGTGCGAACGAACAACGAACCACCGCATGCCAGTCAACGTGCCAGACAGCGTGACAGTCTCCTTAATCTCTAACTACTCCAATTTTCAGACTCTTCAAATGTATAATGTCTGCTTTATTATTKGTCTTCTCCCGCCCCTTTTAGTCCGCGCTCCTTTTACATTTCGGCGCCGCCTCTGGGAGATTTTTAGTATAAAAGAAAGAGAGCACTGAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27552</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>151667</contig_pos>
        <strand>+</strand>
        <context>CAATCACCGG[A/C]AACATTAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACAAAGTTCATTAAACTGGAAATTCTAGTAAAAAATCAAACAATCACCGG</left_flank>
        <right_flank>AACATTAAAGCAACAGAGATTTGAGGAGAATCACGAATTAACACAAATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGGGTGCTGAGACGAGTGGGCAGCCAAATGTTGCCGTTCGCTCTTGGATCAGAGAGTGTGTGAAGTGAAGAGGGTTTGACGGAATGGTGACCTCTTGCAGATTGCGTAAACGTTCTATACACACTGATTGGCGGACCAACGCATATTGTGTATGAATAGGTGATGTATGTGCGAAATGACCCGCGTAGTCGGATATATGAGATTCTCTGACTTTGATAGATTTTTACCAGTTTGCTGTCACAGGGTTTTATCTTTCTGGGCCCATGTTTTTTTTGGAGTTTTCCAAAAATCTTAAAAGTTCATATTTGTATGTTCCAAGCCTGGCATACACAGAAAAAACCTAATTATGTTTTTGTCCTACTGCTCCAAAGTCAAAAACAATTAGCAAGTGGTTTTTTCATAGTAACCTACATTTTACACAAATATGAACTCCAGAAAAAATATCACAACAAAGTTCATTAAACTGGAAATTCTAGTAAAAAATCAAACAATCACCGGCAACATTAAAGCAACAGAGATTTGAGGAGAATCACGAATTAACACAAATATTACATCATATTGAATGGATTAACACTTGATGATGAAATTGAAAACTTTGGAGAAGAGAACTCGGCAACGCTTGGCAATAACGGAGCAATGGCGACGAGTGCGGCCTGGAAAATTTATTATATACTAGAAATTCAAAATTGTTATAAAAAACGACAACTTGGCTAAATAATTTCACAGCCGCCAAAATTTTGACGAAATTCATTGTTTGAACCGCATTCACTCTAATGAAAACTTATCCGAATTGTTAACTTTTAGCTCGATTATCTCGATTCCTCATGAAAATATCGAAATTTTGTCAACTGACAGTATTTTGGTGATAATTTGATGAATAATTTGCCAGTTGAAAAATGTTTGATATTTTTCACGAGAATCGAGCTAGTTGAGCTCAAAATTGACGGTTTGGGCGAGCTTCCAACAGAGGAGATACAGTATTCACAGAAATCGAACTTA</canonical>
            <polymorphic>CGGGGTGCTGAGACGAGTGGGCAGCCAAATGTTGCCGTTCGCTCTTGGATCAGAGAGTGTGTGAAGTGAAGAGGGTTTGACGGAATGGTGACCTCTTGCAGATTGCGTAAACGTTCTATACACACTGATTGGCGGACCAACGCATATTGTGTATGAATAGGTGATGTATGTGCGAAATGACCCGCGTAGTCGGATATATGAGATTCTCTGACTTTGATAGATTTTTACCAGTTTGCTGTCACAGGGTTTTATCTTTCTGGGCCCATGTTTTTTTTGGAGTTTTCCAAAAATCTTAAAAGTTCATATTTGTATGTTCCAAGCCTGGCATACACAGAAAAAACCTAATTATGTTTTTGTCCTACTGCTCCAAAGTCAAAAACAATTAGCAAGTGGTTTTTTCATAGTAACCTACATTTTACACAAATATGAACTCCAGAAAAAATATCACAACAAAGTTCATTAAACTGGAAATTCTAGTAAAAAATCAAACAATCACCGGMAACATTAAAGCAACAGAGATTTGAGGAGAATCACGAATTAACACAAATATTACATCATATTGAATGGATTAACACTTGATGATGAAATTGAAAACTTTGGAGAAGAGAACTCGGCAACGCTTGGCAATAACGGAGCAATGGCGACGAGTGCGGCCTGGAAAATTTATTATATACTAGAAATTCAAAATTGTTATAAAAAACGACAACTTGGCTAAATAATTTCACAGCCGCCAAAATTTTGACGAAATTCATTGTTTGAACCGCATTCACTCTAATGAAAACTTATCCGAATTGTTAACTTTTAGCTCGATTATCTCGATTCCTCATGAAAATATCGAAATTTTGTCAACTGACAGTATTTTGGTGATAATTTGATGAATAATTTGCCAGTTGAAAAATGTTTGATATTTTTCACGAGAATCGAGCTAGTTGAGCTCAAAATTGACGGTTTGGGCGAGCTTCCAACAGAGGAGATACAGTATTCACAGAAATCGAACTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTCCAAAGTCAAAAACAATTA</pcr_primer_p1>
		<pcr_primer_p2>GAGTTCTCTTCTCCAAAGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTCCAAAGTCAAAAACAATTAGCAAGTGGTTTTTTCATAGTAACCTACATTTTACACAAATATGAACTCCAGAAAAAATATCACAACAAAGTTCATTAAACTGGAAATTCTAGTAAAAAATCAAACAATCACCGGCAACATTAAAGCAACAGAGATTTGAGGAGAATCACGAATTAACACAAATATTACATCATATTGAATGGATTAACACTTGATGATGAAATTGAAAACTTTGGAGAAGAGAACTC</canonical_amplicon>
		<polymorphic_amplicon>GCTCCAAAGTCAAAAACAATTAGCAAGTGGTTTTTTCATAGTAACCTACATTTTACACAAATATGAACTCCAGAAAAAATATCACAACAAAGTTCATTAAACTGGAAATTCTAGTAAAAAATCAAACAATCACCGGMAACATTAAAGCAACAGAGATTTGAGGAGAATCACGAATTAACACAAATATTACATCATATTGAATGGATTAACACTTGATGATGAAATTGAAAACTTTGGAGAAGAGAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27553</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>162847</contig_pos>
        <strand>+</strand>
        <context>ATTATCTCTT[G/T]CACGTATTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCCTATTCTCTCGTATTGCTCATCGTTTGGCAGCTCTCGAATTATCTCTT</left_flank>
        <right_flank>CACGTATTCGGAGACTCCTTTGTGTTTGGTGTCGCGTTGGACAATGGGCA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTACCCATTATCGGATGTAAATCTAAGTTGTGAAAGCTAAGTTTTCGAGTCATGAAAACAAAAAGACAGACAATATGTGTCAATTCATTTGGAATAACATTAACATCAGGGACCAATGAGGAAAGTCTTTGGGAAAATGGAATAAAAAAAATATCTATGAAATTAAAAAAATTGAATAAATTAGTGTAATTTAGTTTTTAAACAAGAAGAACTATGAGACCACACAGTCCACTGATCATCACCGCTTTGCCGATTCCATAATTCGTCCTTTCCTCTGTCATAACCATTTTCTGTCGAATCGCGGTTTGTCCCGCGGCCATTTCTTTACTGACTGCGTCGTACGAGTTCTGAAACTGATATCTGTGTCACTTGATCATTTTGCTGATAGATGTGGAGAGAGAGAAAGCTCAAAGCATGCGAAATTTGATATCTTACGTTCAGCATCTTTCCTATTCTCTCGTATTGCTCATCGTTTGGCAGCTCTCGAATTATCTCTTTCACGTATTCGGAGACTCCTTTGTGTTTGGTGTCGCGTTGGACAATGGGCATGATTTCAATTTTTCCAGGAAATGGTTGGTCAGGAACTGGAACTTGAAACTGTTTTGAAAAACAAACCAACGGTTTTTTTAAATTAACCTGTTTTTCTGATAGAAGCCTATTCTTTAAAGGTATGTTGAGCTCAATTTTCTCATTTCTTATGACAGGTATAGAAAATATGTCAACTGATAAAATATAGCTAACAACATAGCAAATAATATAGCAGCTGGCAAATTTTTCTTATTTTGCATAGAAATGGAGACAATTGAGTTCAAAGTTTACGGTTCAGGTGGTCTTCTATTAGAGGAAATATGGTAATTGAGAACGGAACTCAATAAACTATCGAAATAAAATTGTGCAACAGAATTTATATTATATGTACATATATATTTTAAATTGACGCTCAGATGAACAATACAAAAGCTTTGATATGTTTTCTACAATTCTAGTTTTGCCCAGGA</canonical>
            <polymorphic>ATTTACCCATTATCGGATGTAAATCTAAGTTGTGAAAGCTAAGTTTTCGAGTCATGAAAACAAAAAGACAGACAATATGTGTCAATTCATTTGGAATAACATTAACATCAGGGACCAATGAGGAAAGTCTTTGGGAAAATGGAATAAAAAAAATATCTATGAAATTAAAAAAATTGAATAAATTAGTGTAATTTAGTTTTTAAACAAGAAGAACTATGAGACCACACAGTCCACTGATCATCACCGCTTTGCCGATTCCATAATTCGTCCTTTCCTCTGTCATAACCATTTTCTGTCGAATCGCGGTTTGTCCCGCGGCCATTTCTTTACTGACTGCGTCGTACGAGTTCTGAAACTGATATCTGTGTCACTTGATCATTTTGCTGATAGATGTGGAGAGAGAGAAAGCTCAAAGCATGCGAAATTTGATATCTTACGTTCAGCATCTTTCCTATTCTCTCGTATTGCTCATCGTTTGGCAGCTCTCGAATTATCTCTTKCACGTATTCGGAGACTCCTTTGTGTTTGGTGTCGCGTTGGACAATGGGCATGATTTCAATTTTTCCAGGAAATGGTTGGTCAGGAACTGGAACTTGAAACTGTTTTGAAAAACAAACCAACGGTTTTTTTAAATTAACCTGTTTTTCTGATAGAAGCCTATTCTTTAAAGGTATGTTGAGCTCAATTTTCTCATTTCTTATGACAGGTATAGAAAATATGTCAACTGATAAAATATAGCTAACAACATAGCAAATAATATAGCAGCTGGCAAATTTTTCTTATTTTGCATAGAAATGGAGACAATTGAGTTCAAAGTTTACGGTTCAGGTGGTCTTCTATTAGAGGAAATATGGTAATTGAGAACGGAACTCAATAAACTATCGAAATAAAATTGTGCAACAGAATTTATATTATATGTACATATATATTTTAAATTGACGCTCAGATGAACAATACAAAAGCTTTGATATGTTTTCTACAATTCTAGTTTTGCCCAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGATATCTTACGTTCAGCATCT</pcr_primer_p1>
		<pcr_primer_p2>CATACCTTTAAAGAATAGGCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGATATCTTACGTTCAGCATCTTTCCTATTCTCTCGTATTGCTCATCGTTTGGCAGCTCTCGAATTATCTCTTTCACGTATTCGGAGACTCCTTTGTGTTTGGTGTCGCGTTGGACAATGGGCATGATTTCAATTTTTCCAGGAAATGGTTGGTCAGGAACTGGAACTTGAAACTGTTTTGAAAAACAAACCAACGGTTTTTTTAAATTAACCTGTTTTTCTGATAGAAGCCTATTCTTTAAAGGTATG</canonical_amplicon>
		<polymorphic_amplicon>TTGATATCTTACGTTCAGCATCTTTCCTATTCTCTCGTATTGCTCATCGTTTGGCAGCTCTCGAATTATCTCTTKCACGTATTCGGAGACTCCTTTGTGTTTGGTGTCGCGTTGGACAATGGGCATGATTTCAATTTTTCCAGGAAATGGTTGGTCAGGAACTGGAACTTGAAACTGTTTTGAAAAACAAACCAACGGTTTTTTTAAATTAACCTGTTTTTCTGATAGAAGCCTATTCTTTAAAGGTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27554</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>190395</contig_pos>
        <strand>+</strand>
        <context>TCGAAACCCA[C/T]TTGTGGCAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTTTAGCAGTTCGGCACCACGCTATTGTCACGGTTCTTCTCGAAACCCA</left_flank>
        <right_flank>TTGTGGCAACTAATTCGAAAACGCAGAAAAAAAAACGAAAACACCATTTA</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTCACATCACTTTGAAATTCTGAAAGACTCCCTTTTCCCGTATTTGTACTGAAAAAATAAGGTGTATTTCAGAAACTGTCAGATAGCTGAAAAACTACGATTTTTCAATAAAATCTGGGAATGCAAAGTTTTCAATCTAGGTCCGTTTTACACTCTCCGAAATTTCCAATGTGATCGAAAACTGGACAGTCAAGCTCGAAACTCCTGAAAATGGACAAAATGACCGAAAATCAGCTGAAAAAAAGTTTTCAATAACTTATTGACTAGTACTGTACGTACCAGTTGCACGTGAAATGGAAACTTTGAAAATTAATCAGTATTTTCAGCCAACCTTATAAGCCACTTTTATTTGAATTTTTGCATTTTGAAACATGGCGACCTTTGAAAATGCAAAAAAAAAACGAATTTTCCAAAGACCTCTCGAACAACTTTTATGAATTATTTCCACGTTTAGCAGTTCGGCACCACGCTATTGTCACGGTTCTTCTCGAAACCCACTTGTGGCAACTAATTCGAAAACGCAGAAAAAAAAACGAAAACACCATTTATTTTTCATAGTCTTCCCCGCATCCCATGAGCCCTAATCCTCCACTTTGTCACTAAAATACAGAAAAGACGTAATTACTTGAGACTTGAGTCACACACACACACCACCACCAGTTACCGTAATAAATGTGGCTCATCTGGAAGGAGGTCTTCTCTTATTTATTCATTTTGTTTTCAAAATTTCATTCATATTATGCTGTTTTTATGTTGTTTGTTCGTTCAGACGTATTCAAAAGGACATTTTGGTATTTTTCTTTTTCTTCTGAATTATTTTGAATAATTTATAGATTCATCTCGTTGGCTGTGTGTTCTGTTTTTGTGATGTCTATATCTGAAAATTACAAAATGAAGAAGGAAATGAGGTTGAAGAAAAAAAAACAGAATTCAGGAATAACTCTAGCTGGAAATCAGATTTTCAGAAGAACAGGAAATGATGTCACAGGTCTGGATTT</canonical>
            <polymorphic>GTTTCACATCACTTTGAAATTCTGAAAGACTCCCTTTTCCCGTATTTGTACTGAAAAAATAAGGTGTATTTCAGAAACTGTCAGATAGCTGAAAAACTACGATTTTTCAATAAAATCTGGGAATGCAAAGTTTTCAATCTAGGTCCGTTTTACACTCTCCGAAATTTCCAATGTGATCGAAAACTGGACAGTCAAGCTCGAAACTCCTGAAAATGGACAAAATGACCGAAAATCAGCTGAAAAAAAGTTTTCAATAACTTATTGACTAGTACTGTACGTACCAGTTGCACGTGAAATGGAAACTTTGAAAATTAATCAGTATTTTCAGCCAACCTTATAAGCCACTTTTATTTGAATTTTTGCATTTTGAAACATGGCGACCTTTGAAAATGCAAAAAAAAAACGAATTTTCCAAAGACCTCTCGAACAACTTTTATGAATTATTTCCACGTTTAGCAGTTCGGCACCACGCTATTGTCACGGTTCTTCTCGAAACCCAYTTGTGGCAACTAATTCGAAAACGCAGAAAAAAAAACGAAAACACCATTTATTTTTCATAGTCTTCCCCGCATCCCATGAGCCCTAATCCTCCACTTTGTCACTAAAATACAGAAAAGACGTAATTACTTGAGACTTGAGTCACACACACACACCACCACCAGTTACCGTAATAAATGTGGCTCATCTGGAAGGAGGTCTTCTCTTATTTATTCATTTTGTTTTCAAAATTTCATTCATATTATGCTGTTTTTATGTTGTTTGTTCGTTCAGACGTATTCAAAAGGACATTTTGGTATTTTTCTTTTTCTTCTGAATTATTTTGAATAATTTATAGATTCATCTCGTTGGCTGTGTGTTCTGTTTTTGTGATGTCTATATCTGAAAATTACAAAATGAAGAAGGAAATGAGGTTGAAGAAAAAAAAACAGAATTCAGGAATAACTCTAGCTGGAAATCAGATTTTCAGAAGAACAGGAAATGATGTCACAGGTCTGGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>175 118 114 105 88 55 51 50 41 38 21 21 19 17 13 13 11 8 6 6 5 4 3 3 3 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>175 118 114 105 88 55 51 50 41 38 25 21 21 17 13 13 11 8 6 5 4 3 3 3 2 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTATTTTCAGCCAACCTTAT</pcr_primer_p1>
		<pcr_primer_p2>GGAAGACTATGAAAAATAAATGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGTATTTTCAGCCAACCTTATAAGCCACTTTTATTTGAATTTTTGCATTTTGAAACATGGCGACCTTTGAAAATGCAAAAAAAAAACGAATTTTCCAAAGACCTCTCGAACAACTTTTATGAATTATTTCCACGTTTAGCAGTTCGGCACCACGCTATTGTCACGGTTCTTCTCGAAACCCACTTGTGGCAACTAATTCGAAAACGCAGAAAAAAAAACGAAAACACCATTTATTTTTCATAGTCTTCC</canonical_amplicon>
		<polymorphic_amplicon>CAGTATTTTCAGCCAACCTTATAAGCCACTTTTATTTGAATTTTTGCATTTTGAAACATGGCGACCTTTGAAAATGCAAAAAAAAAACGAATTTTCCAAAGACCTCTCGAACAACTTTTATGAATTATTTCCACGTTTAGCAGTTCGGCACCACGCTATTGTCACGGTTCTTCTCGAAACCCAYTTGTGGCAACTAATTCGAAAACGCAGAAAAAAAAACGAAAACACCATTTATTTTTCATAGTCTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27555</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>216667</contig_pos>
        <strand>+</strand>
        <context>AAAAAACTTA[C/G]CATCGTACTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AACTATTATCTATATTTCTCCGACCTGCGATCATTTTTCTAAAAAACTTA</left_flank>
        <right_flank>CATCGTACTTATCCCTTCTATGCTTCAGAGTTTCCAAATTATACTCAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGACAATGGGATTGTTGTCGAAACAATGGGACCGTTGTCGCAATTCGTTGGGACCTGCGGTCCGATGATGGGACCGACGGTCCCGCTTTGGGACCGTTCTTCCCGGAAAGAGCCAAACTAAGTACGTCTCGTATTGAATTGAATTGAATTGAATTCACTACGTTAAAAAAACATGGATAAAAAATGAAAAAAAATAAGGAGAGGGGAGGGTAGGGTGACATAGAAAAAGAAAAAAAAACTAATGCTACTATTAATAATCAATCAGGGGAACAAAAATCAAATCAAACAACGTCTGTCGGAGAGCGTCTTCAAACTCCATTTTTTGTGGAATTTACCATTTTACTGAGCACTCTATTTGTGAAAAAGGTTCTTTTAACTTTAGTTTTAGGAACCTTCCAAAAGTATGTGCGTTGGCTACGGGTTTTTGTTGCATTTATCTTAAAATAAGAACTATTATCTATATTTCTCCGACCTGCGATCATTTTTCTAAAAAACTTAGCATCGTACTTATCCCTTCTATGCTTCAGAGTTTCCAAATTATACTCAACATATCTTTCTACTGCTGACTTATAATAATTCATTTAGAAGTTCCAAACAAGCGGTGGAAATGTCTCGATTGCACTCCTATCTGACATCCACATCGGTCCATCTGTGGGACGGACTAGAATCGCAAGGATAGTAGAGATGACGAATGCTCTGAAGCCAGGTAAACTGGAAAACTGTGATTCATTCAACATATCTCGTCTTCAGACATAATCGCTATTGCTGGTGATCTTGCCGACGGACTTGTTCGAGACTTCCATGGAGCCGCTGAACCATTGTGCAATTTGAAAGCTCCAGGAGGTGTCTATTTTGCAACAGGAAATCATGAGTACATGCATGGAAACGTCACAGAATGGTTCTGGTTCCTGGAAAATTGCAATATAACGGTTAGCTTTTATAAAAAGATGATAACAACCGAAATTATTTTTCTAAAATTTTTGTTCCAGATACTTCACA</canonical>
            <polymorphic>GGGACAATGGGATTGTTGTCGAAACAATGGGACCGTTGTCGCAATTCGTTGGGACCTGCGGTCCGATGATGGGACCGACGGTCCCGCTTTGGGACCGTTCTTCCCGGAAAGAGCCAAACTAAGTACGTCTCGTATTGAATTGAATTGAATTGAATTCACTACGTTAAAAAAACATGGATAAAAAATGAAAAAAAATAAGGAGAGGGGAGGGTAGGGTGACATAGAAAAAGAAAAAAAAACTAATGCTACTATTAATAATCAATCAGGGGAACAAAAATCAAATCAAACAACGTCTGTCGGAGAGCGTCTTCAAACTCCATTTTTTGTGGAATTTACCATTTTACTGAGCACTCTATTTGTGAAAAAGGTTCTTTTAACTTTAGTTTTAGGAACCTTCCAAAAGTATGTGCGTTGGCTACGGGTTTTTGTTGCATTTATCTTAAAATAAGAACTATTATCTATATTTCTCCGACCTGCGATCATTTTTCTAAAAAACTTASCATCGTACTTATCCCTTCTATGCTTCAGAGTTTCCAAATTATACTCAACATATCTTTCTACTGCTGACTTATAATAATTCATTTAGAAGTTCCAAACAAGCGGTGGAAATGTCTCGATTGCACTCCTATCTGACATCCACATCGGTCCATCTGTGGGACGGACTAGAATCGCAAGGATAGTAGAGATGACGAATGCTCTGAAGCCAGGTAAACTGGAAAACTGTGATTCATTCAACATATCTCGTCTTCAGACATAATCGCTATTGCTGGTGATCTTGCCGACGGACTTGTTCGAGACTTCCATGGAGCCGCTGAACCATTGTGCAATTTGAAAGCTCCAGGAGGTGTCTATTTTGCAACAGGAAATCATGAGTACATGCATGGAAACGTCACAGAATGGTTCTGGTTCCTGGAAAATTGCAATATAACGGTTAGCTTTTATAAAAAGATGATAACAACCGAAATTATTTTTCTAAAATTTTTGTTCCAGATACTTCACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 225 152 119</canonical_bands>
                <polymorphic_bands>656 225 119</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTGGAATTTACCATTTTA</pcr_primer_p1>
		<pcr_primer_p2>TCAGCAGTAGAAAGATATGTTGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTGGAATTTACCATTTTACTGAGCACTCTATTTGTGAAAAAGGTTCTTTTAACTTTAGTTTTAGGAACCTTCCAAAAGTATGTGCGTTGGCTACGGGTTTTTGTTGCATTTATCTTAAAATAAGAACTATTATCTATATTTCTCCGACCTGCGATCATTTTTCTAAAAAACTTAGCATCGTACTTATCCCTTCTATGCTTCAGAGTTTCCAAATTATACTCAACATATCTTTCTACTGCTGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTGGAATTTACCATTTTACTGAGCACTCTATTTGTGAAAAAGGTTCTTTTAACTTTAGTTTTAGGAACCTTCCAAAAGTATGTGCGTTGGCTACGGGTTTTTGTTGCATTTATCTTAAAATAAGAACTATTATCTATATTTCTCCGACCTGCGATCATTTTTCTAAAAAACTTASCATCGTACTTATCCCTTCTATGCTTCAGAGTTTCCAAATTATACTCAACATATCTTTCTACTGCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27556</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>233642</contig_pos>
        <strand></strand>
        <context>tttttcagtt[T/A]ttttccgatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GAAAACTTTGCATTCACATAATTTTTTTGAAAATTTCTAATTTTTCAGTT</left_flank>
        <right_flank>TTTTCCGATTTCTGAATGACACTCATTTTCTCACTTTTCAAGTACAAAAA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAAACTTGGATGGAGAAAAACCATACTTTCTACTGTACACCCTGATATTGGACATGATTTTTGAAGTGTGTTTTGATCTGGCTTGTGATCTAGAAGTAAGGCATGGCAAATCTGTGCATAGAGTGGGGCGGAAAAATAGGAAAGAGGTAGGAAAAAATTCTAGAAAAGTGAGTCATTAGAGAAGGGCAACGAGAAGAGCTACCAACACTGATGAAATGCAGGAGATGATGGTGGTTGATTTGGTTTCTTCTGGAAAAATCAATTGTTAGAAAAAAAATAATTGTTAGAGAAAAAATAATTGTTAGAATGCACCTACAGAATCTACAGTACTGGTTAATAAGAAATACAAAATCACATTTTTCAGTTGATGTTCACTATTTTCAGTAGTTTGGAGCCAAGGTTCCAATCACTTTGAAAGTTGCGGAGGATGTAAAACAGATCTAGATTGAAAACTTTGCATTCACATAATTTTTTTGAAAATTTCTAATTTTTCAGTTTTTTTCCGATTTCTGAATGACACTCATTTTCTCACTTTTCAAGTACAAAAACAGGCAAAAGAGGGCGTTTTTGAAATACCAGTTAGTAGCTGAAAAGTTAGGAATTTTTAAGAAATTCTGTAAATGCAATGTTTGAAATCTACATATGTTTTAGACTCTTCAAAAATTTCAAAGTGGTCAAAAATTGACAGCAAGCTACAGACTTCTGAAAAAGGTCAAAATGACCGAAAACCAACTGAAAAAATCTGGTTTTGTATATCTTATTGTCCGGTACTGTGCATCTAGTTTTTAGCGTACATTTGCTTCACGTGTACATAGTATTTTTTAGTATTTATGGGAGTACATGAAATAATTTTTCGGAGTTTCGATTTTTGCTCTGAATTATACAGAATTAAACGCTCTACGCACGAAGGTCCCATGAGCCCTCTGAATCAAAGTACCTAAAAATGCAATGTACTTTAGAACTACTCTTTCAAGATGAACCCTTTGATTTTGGGCCCT</canonical>
            <polymorphic>GGAAAACTTGGATGGAGAAAAACCATACTTTCTACTGTACACCCTGATATTGGACATGATTTTTGAAGTGTGTTTTGATCTGGCTTGTGATCTAGAAGTAAGGCATGGCAAATCTGTGCATAGAGTGGGGCGGAAAAATAGGAAAGAGGTAGGAAAAAATTCTAGAAAAGTGAGTCATTAGAGAAGGGCAACGAGAAGAGCTACCAACACTGATGAAATGCAGGAGATGATGGTGGTTGATTTGGTTTCTTCTGGAAAAATCAATTGTTAGAAAAAAAATAATTGTTAGAGAAAAAATAATTGTTAGAATGCACCTACAGAATCTACAGTACTGGTTAATAAGAAATACAAAATCACATTTTTCAGTTGATGTTCACTATTTTCAGTAGTTTGGAGCCAAGGTTCCAATCACTTTGAAAGTTGCGGAGGATGTAAAACAGATCTAGATTGAAAACTTTGCATTCACATAATTTTTTTGAAAATTTCTAATTTTTCAGTTWTTTTCCGATTTCTGAATGACACTCATTTTCTCACTTTTCAAGTACAAAAACAGGCAAAAGAGGGCGTTTTTGAAATACCAGTTAGTAGCTGAAAAGTTAGGAATTTTTAAGAAATTCTGTAAATGCAATGTTTGAAATCTACATATGTTTTAGACTCTTCAAAAATTTCAAAGTGGTCAAAAATTGACAGCAAGCTACAGACTTCTGAAAAAGGTCAAAATGACCGAAAACCAACTGAAAAAATCTGGTTTTGTATATCTTATTGTCCGGTACTGTGCATCTAGTTTTTAGCGTACATTTGCTTCACGTGTACATAGTATTTTTTAGTATTTATGGGAGTACATGAAATAATTTTTCGGAGTTTCGATTTTTGCTCTGAATTATACAGAATTAAACGCTCTACGCACGAAGGTCCCATGAGCCCTCTGAATCAAAGTACCTAAAAATGCAATGTACTTTAGAACTACTCTTTCAAGATGAACCCTTTGATTTTGGGCCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTAGAATGCACCTACAGAATC</pcr_primer_p1>
		<pcr_primer_p2>AGAAAAAGGTAAGAAAGCTGTG</pcr_primer_p2>
		<pcr_amplicon_size>756</pcr_amplicon_size>
		<canonical_amplicon>TGTTAGAATGCACCTACAGAATCTACAGTACTGGTTAATAAGAAATACAAAATCACATTTTTCAGTTGATGTTCACTATTTTCAGTAGTTTGGAGCCAAGGTTCCAATCACTTTGAAAGTTGCGGAGGATGTAAAACAGATCTAGATTGAAAACTTTGCATTCACATAATTTTTTTGAAAATTTCTAATTTTTCAGTTTTTTTCCGATTTCTGAATGACA</canonical_amplicon>
		<polymorphic_amplicon>TGTTAGAATGCACCTACAGAATCTACAGTACTGGTTAATAAGAAATACAAAATCACATTTTTCAGTTGATGTTCACTATTTTCAGTAGTTTGGAGCCAAGGTTCCAATCACTTTGAAAGTTGCGGAGGATGTAAAACAGATCTAGATTGAAAACTTTGCATTCACATAATTTTTTTGAAAATTTCTAATTTTTCAGTTWTTTTCCGATTTCTGAATGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27557</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>234383</contig_pos>
        <strand></strand>
        <context>GTTACAGTTT[T/A]CCGGCAAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGTCATCTCCGTTGTTGTCACTCTTCTTCACTCTGACACTGTTACAGTTT</left_flank>
        <right_flank>CCGGCAAGAAGTGGTCAGCGTTCTCCAATCGGTGGCAGAGCTGATATTCA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCTGGTTTTGTATATCTTATTGTCCGGTACTGTGCATCTAGTTTTTAGCGTACATTTGCTTCACGTGTACATAGTATTTTTTAGTATTTATGGGAGTACATGAAATAATTTTTCGGAGTTTCGATTTTTGCTCTGAATTATACAGAATTAAACGCTCTACGCACGAAGGTCCCATGAGCCCTCTGAATCAAAGTACCTAAAAATGCAATGTACTTTAGAACTACTCTTTCAAGATGAACCCTTTGATTTTGGGCCCTAAATAGAGTTAAATATGAAAATTCAAAAAAATCCGCACAGCTTTCTTACCTTTTTCTGGTCTTCTCAATTCCACATTAATCGCATCCTTGGCCATACTGCCCCACCCCAACGCATTCCTAGCCTTCAACTGGACATGATACTTCTGCCCTTGCTCGAGATATGATTGCAAATCAATTGTATGAGTCCACTTGTCATCTCCGTTGTTGTCACTCTTCTTCACTCTGACACTGTTACAGTTTTCCGGCAAGAAGTGGTCAGCGTTCTCCAATCGGTGGCAGAGCTGATATTCAAGGATCTTATCAAAAGCTCTAACGGTCCATGAGAGCTCCGAGTCGTCCAGCGAAAGTTGTGGTGGTCCTGGTCTTCCTGAAAAATCAGAAAAATCAGAAAAATAAGGAGTTCAGTGAGAGTTTCTAGTACAGAGCAACCAATTTTTCCCTCATGTTCTGTTCAGTTTTATGTAAGTCATCTGTCTCCTCCCGATGTTCTCTTCCTCTAAGGAACTAATTCATTATGTAAATTTGTCGGTAGAAGGCTCATTCAAAAGGTGACGGAGTCCACAGGGCCCGGTGCAAATAACAAGGCCCCCTTCTATTCCGCAGGTGAATTATTCCCAACGTTTTGCCAGAGAGATCCGGAGGAGGAACAGAACGGAACACGACGAGAAAATGATTGGCAATTAGTCAAATGTCATCACGCACCACTAACGTGCACCACGGCGATGACAGATCCGAGTTTGT</canonical>
            <polymorphic>AATCTGGTTTTGTATATCTTATTGTCCGGTACTGTGCATCTAGTTTTTAGCGTACATTTGCTTCACGTGTACATAGTATTTTTTAGTATTTATGGGAGTACATGAAATAATTTTTCGGAGTTTCGATTTTTGCTCTGAATTATACAGAATTAAACGCTCTACGCACGAAGGTCCCATGAGCCCTCTGAATCAAAGTACCTAAAAATGCAATGTACTTTAGAACTACTCTTTCAAGATGAACCCTTTGATTTTGGGCCCTAAATAGAGTTAAATATGAAAATTCAAAAAAATCCGCACAGCTTTCTTACCTTTTTCTGGTCTTCTCAATTCCACATTAATCGCATCCTTGGCCATACTGCCCCACCCCAACGCATTCCTAGCCTTCAACTGGACATGATACTTCTGCCCTTGCTCGAGATATGATTGCAAATCAATTGTATGAGTCCACTTGTCATCTCCGTTGTTGTCACTCTTCTTCACTCTGACACTGTTACAGTTTWCCGGCAAGAAGTGGTCAGCGTTCTCCAATCGGTGGCAGAGCTGATATTCAAGGATCTTATCAAAAGCTCTAACGGTCCATGAGAGCTCCGAGTCGTCCAGCGAAAGTTGTGGTGGTCCTGGTCTTCCTGAAAAATCAGAAAAATCAGAAAAATAAGGAGTTCAGTGAGAGTTTCTAGTACAGAGCAACCAATTTTTCCCTCATGTTCTGTTCAGTTTTATGTAAGTCATCTGTCTCCTCCCGATGTTCTCTTCCTCTAAGGAACTAATTCATTATGTAAATTTGTCGGTAGAAGGCTCATTCAAAAGGTGACGGAGTCCACAGGGCCCGGTGCAAATAACAAGGCCCCCTTCTATTCCGCAGGTGAATTATTCCCAACGTTTTGCCAGAGAGATCCGGAGGAGGAACAGAACGGAACACGACGAGAAAATGATTGGCAATTAGTCAAATGTCATCACGCACCACTAACGTGCACCACGGCGATGACAGATCCGAGTTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGCAAATCAATTGTATGAGTC</pcr_primer_p1>
		<pcr_primer_p2>TCACTGAACTCCTTATTTTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATTGCAAATCAATTGTATGAGTCCACTTGTCATCTCCGTTGTTGTCACTCTTCTTCACTCTGACACTGTTACAGTTTTCCGGCAAGAAGTGGTCAGCGTTCTCCAATCGGTGGCAGAGCTGATATTCAAGGATCTTATCAAAAGCTCTAACGGTCCATGAGAGCTCCGAGTCGTCCAGCGAAAGTTGTGGTGGTCCTGGTCTTCCTGAAAAATCAGAAAAATCAGAAAAATAAGGAGTTCAGTGA</canonical_amplicon>
		<polymorphic_amplicon>ATTGCAAATCAATTGTATGAGTCCACTTGTCATCTCCGTTGTTGTCACTCTTCTTCACTCTGACACTGTTACAGTTTWCCGGCAAGAAGTGGTCAGCGTTCTCCAATCGGTGGCAGAGCTGATATTCAAGGATCTTATCAAAAGCTCTAACGGTCCATGAGAGCTCCGAGTCGTCCAGCGAAAGTTGTGGTGGTCCTGGTCTTCCTGAAAAATCAGAAAAATCAGAAAAATAAGGAGTTCAGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27558</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>243215</contig_pos>
        <strand>+</strand>
        <context>GACGTGACTG[A/G]TTTTTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGAAGGAACCATGGGAAAAGTGTGAGAATCAAGAAGAAGACGTGACTG</left_flank>
        <right_flank>TTTTTTTTTGAATTTGAAATTTTAGGGGTTGTTAAAATAAGTAGAACTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCGGGGATTACTGCCGACAACAGGGCAATTGTGTAAGTATATGGGTGTCTATGTATGTATATTCCTGTCCTTTTTGTCCGGGCTGCGATCCTCTTCTTTAACTTTTCCACTTCTCCATTTCCTTGGATTCCCAAAAAATTTCAATCTCAAGAACGAGGATTTAGATGGATCACATCCGTTGGTGAAAACAAAAAAGGGAGGAAAACGAGAAGGACGCGTACCCTTTTTCGCCTTCGAGTTTTTAAATTTATGCACAAATACATCAAATTAATGAATGAGCAAAAGCAGAAGCAGAGGAGAGAGGAGCAATGAAGGGCGGGAGGCGGAGAATGAGAAGGGCATAGGCAAAAACCACGACAGATCGGTATCTTTTGAAGCTAAGAATGGCGTAGGAAGCAAGGGTTGACACTGAAGAATAACAGAAATGAAGGATTGGAGATGAGAACAAGAAGAAGGAACCATGGGAAAAGTGTGAGAATCAAGAAGAAGACGTGACTGTTTTTTTTTTGAATTTGAAATTTTAGGGGTTGTTAAAATAAGTAGAACTCCAAGTTTTGATTATCAAAAGTTCACTAGTTTATATATTTTTGCGAAATTAGGAAAACACGCAATTTGCAATTGCTTTTTGGCCGTTTTGCACTATTCTGGAGTCTTAAGCTTGCTGGTCAAGTTTCCAATCAACTTGAAAAAATCGAAGGGTATGAAACAGACCTAGATTGAAAACTTTGAACTAGCAGAATTTTTGAAAAATTCTTAGTTTCCCAGGTTATTGCCAATTTTGGAAGACACCTGTTGTCTTCACGTTTTCCGTTAAAAAAACGGGCCGAAAAAGGAAATAACAGGAATCGGCAAATGACCAAAAAACTAAGAATCTTCTAAAAATTCTGTAGAAGCAATGTTTTCAATCTAGGTCTGTTTTACACCCTCCAAAAGTTTCAGAGAGATTGAAAAATTTACAGCCGAGTTCCAGACTCCTGAAAATGATCAAAATAACCGTGA</canonical>
            <polymorphic>CGCGGGGATTACTGCCGACAACAGGGCAATTGTGTAAGTATATGGGTGTCTATGTATGTATATTCCTGTCCTTTTTGTCCGGGCTGCGATCCTCTTCTTTAACTTTTCCACTTCTCCATTTCCTTGGATTCCCAAAAAATTTCAATCTCAAGAACGAGGATTTAGATGGATCACATCCGTTGGTGAAAACAAAAAAGGGAGGAAAACGAGAAGGACGCGTACCCTTTTTCGCCTTCGAGTTTTTAAATTTATGCACAAATACATCAAATTAATGAATGAGCAAAAGCAGAAGCAGAGGAGAGAGGAGCAATGAAGGGCGGGAGGCGGAGAATGAGAAGGGCATAGGCAAAAACCACGACAGATCGGTATCTTTTGAAGCTAAGAATGGCGTAGGAAGCAAGGGTTGACACTGAAGAATAACAGAAATGAAGGATTGGAGATGAGAACAAGAAGAAGGAACCATGGGAAAAGTGTGAGAATCAAGAAGAAGACGTGACTGRTTTTTTTTTGAATTTGAAATTTTAGGGGTTGTTAAAATAAGTAGAACTCCAAGTTTTGATTATCAAAAGTTCACTAGTTTATATATTTTTGCGAAATTAGGAAAACACGCAATTTGCAATTGCTTTTTGGCCGTTTTGCACTATTCTGGAGTCTTAAGCTTGCTGGTCAAGTTTCCAATCAACTTGAAAAAATCGAAGGGTATGAAACAGACCTAGATTGAAAACTTTGAACTAGCAGAATTTTTGAAAAATTCTTAGTTTCCCAGGTTATTGCCAATTTTGGAAGACACCTGTTGTCTTCACGTTTTCCGTTAAAAAAACGGGCCGAAAAAGGAAATAACAGGAATCGGCAAATGACCAAAAAACTAAGAATCTTCTAAAAATTCTGTAGAAGCAATGTTTTCAATCTAGGTCTGTTTTACACCCTCCAAAAGTTTCAGAGAGATTGAAAAATTTACAGCCGAGTTCCAGACTCCTGAAAATGATCAAAATAACCGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>498 498 4</canonical_bands>
                <polymorphic_bands>996 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACAGATCGGTATCTTTTGAAG</pcr_primer_p1>
		<pcr_primer_p2>CCTAATTTCGCAAAAATATATAAAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GACAGATCGGTATCTTTTGAAGCTAAGAATGGCGTAGGAAGCAAGGGTTGACACTGAAGAATAACAGAAATGAAGGATTGGAGATGAGAACAAGAAGAAGGAACCATGGGAAAAGTGTGAGAATCAAGAAGAAGACGTGACTGTTTTTTTTTTGAATTTGAAATTTTAGGGGTTGTTAAAATAAGTAGAACTCCAAGTTTTGATTATCAAAAGTTCACTAGTTTATATATTTTTGCGAAATTAGG</canonical_amplicon>
		<polymorphic_amplicon>GACAGATCGGTATCTTTTGAAGCTAAGAATGGCGTAGGAAGCAAGGGTTGACACTGAAGAATAACAGAAATGAAGGATTGGAGATGAGAACAAGAAGAAGGAACCATGGGAAAAGTGTGAGAATCAAGAAGAAGACGTGACTGRTTTTTTTTTGAATTTGAAATTTTAGGGGTTGTTAAAATAAGTAGAACTCCAAGTTTTGATTATCAAAAGTTCACTAGTTTATATATTTTTGCGAAATTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27559</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>243491</contig_pos>
        <strand></strand>
        <context>ggttattgcc[A/T]attttggaag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGAACTAGCAGAATTTTTGAAAAATTCTTAGTTTCCCAGGTTATTGCC</left_flank>
        <right_flank>ATTTTGGAAGACACCTGTTGTCTTCACGTTTTCCGTTAAAAAAACGGGCC</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGCAAAAGCAGAAGCAGAGGAGAGAGGAGCAATGAAGGGCGGGAGGCGGAGAATGAGAAGGGCATAGGCAAAAACCACGACAGATCGGTATCTTTTGAAGCTAAGAATGGCGTAGGAAGCAAGGGTTGACACTGAAGAATAACAGAAATGAAGGATTGGAGATGAGAACAAGAAGAAGGAACCATGGGAAAAGTGTGAGAATCAAGAAGAAGACGTGACTGTTTTTTTTTTGAATTTGAAATTTTAGGGGTTGTTAAAATAAGTAGAACTCCAAGTTTTGATTATCAAAAGTTCACTAGTTTATATATTTTTGCGAAATTAGGAAAACACGCAATTTGCAATTGCTTTTTGGCCGTTTTGCACTATTCTGGAGTCTTAAGCTTGCTGGTCAAGTTTCCAATCAACTTGAAAAAATCGAAGGGTATGAAACAGACCTAGATTGAAAACTTTGAACTAGCAGAATTTTTGAAAAATTCTTAGTTTCCCAGGTTATTGCCAATTTTGGAAGACACCTGTTGTCTTCACGTTTTCCGTTAAAAAAACGGGCCGAAAAAGGAAATAACAGGAATCGGCAAATGACCAAAAAACTAAGAATCTTCTAAAAATTCTGTAGAAGCAATGTTTTCAATCTAGGTCTGTTTTACACCCTCCAAAAGTTTCAGAGAGATTGAAAAATTTACAGCCGAGTTCCAGACTCCTGAAAATGATCAAAATAACCGTGACTGAGAAGTACCGTTTTCTGTATGTCCAATTGACTGATTCATTTTAAAAACTGTGTAAGAAATTTAGATGATCTGAAAACCAAAAATAACCCGGAATATCCTCTCAAACGCCTATCCGTAGTATTCATAAACACGTATTTTCAAATTATAGTTAAAATAATGTAGGTATATTTAAATTTTGAGCAAAATGCAGATTTCATGCGACTCACCAAACATCTACAATCTTTGCACATTGTCGGAAAAGATGCGAAGAGGGAAATTTACAAAAAAGTGCGA</canonical>
            <polymorphic>TGAGCAAAAGCAGAAGCAGAGGAGAGAGGAGCAATGAAGGGCGGGAGGCGGAGAATGAGAAGGGCATAGGCAAAAACCACGACAGATCGGTATCTTTTGAAGCTAAGAATGGCGTAGGAAGCAAGGGTTGACACTGAAGAATAACAGAAATGAAGGATTGGAGATGAGAACAAGAAGAAGGAACCATGGGAAAAGTGTGAGAATCAAGAAGAAGACGTGACTGTTTTTTTTTTGAATTTGAAATTTTAGGGGTTGTTAAAATAAGTAGAACTCCAAGTTTTGATTATCAAAAGTTCACTAGTTTATATATTTTTGCGAAATTAGGAAAACACGCAATTTGCAATTGCTTTTTGGCCGTTTTGCACTATTCTGGAGTCTTAAGCTTGCTGGTCAAGTTTCCAATCAACTTGAAAAAATCGAAGGGTATGAAACAGACCTAGATTGAAAACTTTGAACTAGCAGAATTTTTGAAAAATTCTTAGTTTCCCAGGTTATTGCCWATTTTGGAAGACACCTGTTGTCTTCACGTTTTCCGTTAAAAAAACGGGCCGAAAAAGGAAATAACAGGAATCGGCAAATGACCAAAAAACTAAGAATCTTCTAAAAATTCTGTAGAAGCAATGTTTTCAATCTAGGTCTGTTTTACACCCTCCAAAAGTTTCAGAGAGATTGAAAAATTTACAGCCGAGTTCCAGACTCCTGAAAATGATCAAAATAACCGTGACTGAGAAGTACCGTTTTCTGTATGTCCAATTGACTGATTCATTTTAAAAACTGTGTAAGAAATTTAGATGATCTGAAAACCAAAAATAACCCGGAATATCCTCTCAAACGCCTATCCGTAGTATTCATAAACACGTATTTTCAAATTATAGTTAAAATAATGTAGGTATATTTAAATTTTGAGCAAAATGCAGATTTCATGCGACTCACCAAACATCTACAATCTTTGCACATTGTCGGAAAAGATGCGAAGAGGGAAATTTACAAAAAAGTGCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>234 121 106 83 83 77 76 70 33 31 26 19 16 11 7 7</canonical_bands>
                <polymorphic_bands>234 132 121 83 83 77 76 70 33 31 19 16 11 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATAAGTAGAACTCCAAGTTTTG</pcr_primer_p1>
		<pcr_primer_p2>TCATCTAAATTTCTTACACAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>538</pcr_amplicon_size>
		<canonical_amplicon>AAAATAAGTAGAACTCCAAGTTTTGATTATCAAAAGTTCACTAGTTTATATATTTTTGCGAAATTAGGAAAACACGCAATTTGCAATTGCTTTTTGGCCGTTTTGCACTATTCTGGAGTCTTAAGCTTGCTGGTCAAGTTTCCAATCAACTTGAAAAAATCGAAGGGTATGAAACAGACCTAGATTGAAAACTTTGAACTAGCAGAATTTTTGAAAAATTCTTAGTTTCCCAGGTTATTGCCAATTTTGGAAGACACCTGTTGTCTTCACGTTTTCCGTTAAAAAAACGGGCCGAAAAAGGAAATAACAGGAATCGGCAAATGACCAAAAAACTAAGAATCTTCTAAAAATTCTGTAGAAGCAATGTTTTCAATCTAGGTCTGTTTTACACCCTCCAAAAGTTTCAGAGAGATTGAAAAATTTACAGCCGAGTTCCAGACTCCTGAAAATGATCAAAATAACCGTGACTGAGAAGTACCGTTTTCTGTATGTCCAATTGACTGATTCATTTTAAAAACTGTGTAAGAAATTTAGATGA</canonical_amplicon>
		<polymorphic_amplicon>AAAATAAGTAGAACTCCAAGTTTTGATTATCAAAAGTTCACTAGTTTATATATTTTTGCGAAATTAGGAAAACACGCAATTTGCAATTGCTTTTTGGCCGTTTTGCACTATTCTGGAGTCTTAAGCTTGCTGGTCAAGTTTCCAATCAACTTGAAAAAATCGAAGGGTATGAAACAGACCTAGATTGAAAACTTTGAACTAGCAGAATTTTTGAAAAATTCTTAGTTTCCCAGGTTATTGCCWATTTTGGAAGACACCTGTTGTCTTCACGTTTTCCGTTAAAAAAACGGGCCGAAAAAGGAAATAACAGGAATCGGCAAATGACCAAAAAACTAAGAATCTTCTAAAAATTCTGTAGAAGCAATGTTTTCAATCTAGGTCTGTTTTACACCCTCCAAAAGTTTCAGAGAGATTGAAAAATTTACAGCCGAGTTCCAGACTCCTGAAAATGATCAAAATAACCGTGACTGAGAAGTACCGTTTTCTGTATGTCCAATTGACTGATTCATTTTAAAAACTGTGTAAGAAATTTAGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27560</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>245461</contig_pos>
        <strand></strand>
        <context>actttgtttt[A/G]ctccctacaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCTAGATTCTGCTGTTGCCATGTTAATCAAACACGAAAACTTTGTTTT</left_flank>
        <right_flank>CTCCCTACAATCACCTTGTATTTTTCAAAATGATCGGAAACTGGACAGTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGGGCTTAAGTTGATTTTGAGAATTTTCGAGAGTCATCAAAATTATAGTATCGATCAATAAAATATTTAAAAAACCCTGTTGATTTTTGGCCATTTTGACCAGTTTCGGGAGTTTGGAGCTCGGCTGTCAAGTTTCCACTCACTTTGAAAAATTTGGAGAGTATTAAACTGACCTAAATTCAAATTTTTGCATTCACAGGATTTTTCAAAAATTCCTAGTTTATTAGCTATCTGCCGATTTCTGAAAAATAATCATTTTTCACATTTTTAGAACATTAAACGGGAAAAAAGATCCGTCTTTCAGAAATCGGCAAATACGGTAACACTGTAATATAGTGCCACGGCGTTCTATTTTTTGGATGGGTGTTTTGGGATGATGCGCGGTAACAAGAATAGGTCCTCTACTTGTTTAACAGGATATCAAAATGACAAAAAGTAATGTGAAATTCCTAGATTCTGCTGTTGCCATGTTAATCAAACACGAAAACTTTGTTTTACTCCCTACAATCACCTTGTATTTTTCAAAATGATCGGAAACTGGACAGTTGAGCTCCAGACTCTTGAAAATTCTAAAAATCGACTGAAAATTTAGTTTTGTATATCCGGAACTGTACGTCCCAAAACTATTAATACAAATAGTTGCAACCAGTGAAAAAAATCGGAAAATGCTTTTTCGTATAAAAAATACGGTACAACGGATTTCCCAGGGAAAAAAAACCAACTAAAAACGAAATCAAGCATGAAATTTACTCTGTGAAATCCCAAATCATTTAATGGCTTGATGATTTCGATTTCTTCCATATGTAAAGACGATGGGAAACGGAAAAGTCCGCCGCTCCTCATAATAATTGCGAAACCCCAAAACAGGACATGCAAATTATTGTTACATATAAGCGCCCACCGCTAAAAACGGAGTGACTACTACAAAAGTGCGTTTTGTGTTAATATTATTATTATTGTTATTTCTATATAAATTCCCGGTGATGACTGGTCGGTT</canonical>
            <polymorphic>AAAAGGGCTTAAGTTGATTTTGAGAATTTTCGAGAGTCATCAAAATTATAGTATCGATCAATAAAATATTTAAAAAACCCTGTTGATTTTTGGCCATTTTGACCAGTTTCGGGAGTTTGGAGCTCGGCTGTCAAGTTTCCACTCACTTTGAAAAATTTGGAGAGTATTAAACTGACCTAAATTCAAATTTTTGCATTCACAGGATTTTTCAAAAATTCCTAGTTTATTAGCTATCTGCCGATTTCTGAAAAATAATCATTTTTCACATTTTTAGAACATTAAACGGGAAAAAAGATCCGTCTTTCAGAAATCGGCAAATACGGTAACACTGTAATATAGTGCCACGGCGTTCTATTTTTTGGATGGGTGTTTTGGGATGATGCGCGGTAACAAGAATAGGTCCTCTACTTGTTTAACAGGATATCAAAATGACAAAAAGTAATGTGAAATTCCTAGATTCTGCTGTTGCCATGTTAATCAAACACGAAAACTTTGTTTTRCTCCCTACAATCACCTTGTATTTTTCAAAATGATCGGAAACTGGACAGTTGAGCTCCAGACTCTTGAAAATTCTAAAAATCGACTGAAAATTTAGTTTTGTATATCCGGAACTGTACGTCCCAAAACTATTAATACAAATAGTTGCAACCAGTGAAAAAAATCGGAAAATGCTTTTTCGTATAAAAAATACGGTACAACGGATTTCCCAGGGAAAAAAAACCAACTAAAAACGAAATCAAGCATGAAATTTACTCTGTGAAATCCCAAATCATTTAATGGCTTGATGATTTCGATTTCTTCCATATGTAAAGACGATGGGAAACGGAAAAGTCCGCCGCTCCTCATAATAATTGCGAAACCCCAAAACAGGACATGCAAATTATTGTTACATATAAGCGCCCACCGCTAAAAACGGAGTGACTACTACAAAAGTGCGTTTTGTGTTAATATTATTATTATTGTTATTTCTATATAAATTCCCGGTGATGACTGGTCGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAATTTTCGAGAGTCATCAA</pcr_primer_p1>
		<pcr_primer_p2>TAATAGTTTTGGGACGTACAGTT</pcr_primer_p2>
		<pcr_amplicon_size>611</pcr_amplicon_size>
		<canonical_amplicon>GAGAATTTTCGAGAGTCATCAAAATTATAGTATCGATCAATAAAATATTTAAAAAACCCTGTTGATTTTTGGCCATTTTGACCAGTTTCGGGAGTTTGGAGCTCGGCTGTCAAGTTTCCACTCACTTTGAAAAATTTGGAGAGTATTAAACTGACCTAAATTCAAATTTTTGCATTCACAGGATTTTTCAAAAATTCCTAGTTTATTAGCTATCTGCCGATTTCTGAAAAATAATCATTTTTCACATTTTTAGAACATTAAACGGGAAAAAAGATCCGTCTTTCAGAAATCGGCAAATACGGTAACACTGTAATATAGTGCCACGGCGTTCTATTTTTTGGATGGGTGTTTTGGGATGATGCGCGGTAACAAGAATAGGTCCTCTACTTGTTTAACAGGATATCAAAATGACAAAAAGTAATGTGAAATTCCTAGATTCTGCTGTTGCCATGTTAATCAAACACGAAAACTTTGTTTTACTCCCTACAATCACCTTGTATTTTTCAAAATGATCGGAAACTGGACAGTTGAGCTCCAGACTCTTGAAAATTCTAAAAATCGACTGAAAATTTAGTTTTGTATATCCGGAACTGTACGTCCCAAAACTATTA</canonical_amplicon>
		<polymorphic_amplicon>GAGAATTTTCGAGAGTCATCAAAATTATAGTATCGATCAATAAAATATTTAAAAAACCCTGTTGATTTTTGGCCATTTTGACCAGTTTCGGGAGTTTGGAGCTCGGCTGTCAAGTTTCCACTCACTTTGAAAAATTTGGAGAGTATTAAACTGACCTAAATTCAAATTTTTGCATTCACAGGATTTTTCAAAAATTCCTAGTTTATTAGCTATCTGCCGATTTCTGAAAAATAATCATTTTTCACATTTTTAGAACATTAAACGGGAAAAAAGATCCGTCTTTCAGAAATCGGCAAATACGGTAACACTGTAATATAGTGCCACGGCGTTCTATTTTTTGGATGGGTGTTTTGGGATGATGCGCGGTAACAAGAATAGGTCCTCTACTTGTTTAACAGGATATCAAAATGACAAAAAGTAATGTGAAATTCCTAGATTCTGCTGTTGCCATGTTAATCAAACACGAAAACTTTGTTTTRCTCCCTACAATCACCTTGTATTTTTCAAAATGATCGGAAACTGGACAGTTGAGCTCCAGACTCTTGAAAATTCTAAAAATCGACTGAAAATTTAGTTTTGTATATCCGGAACTGTACGTCCCAAAACTATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27561</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>245551</contig_pos>
        <strand></strand>
        <context>tcgactgaaa[A/C]tttagttttg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACTGGACAGTTGAGCTCCAGACTCTTGAAAATTCTAAAAATCGACTGAAA</left_flank>
        <right_flank>TTTAGTTTTGTATATCCGGAACTGTACGTCCCAAAACTATTAATACAAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGCCATTTTGACCAGTTTCGGGAGTTTGGAGCTCGGCTGTCAAGTTTCCACTCACTTTGAAAAATTTGGAGAGTATTAAACTGACCTAAATTCAAATTTTTGCATTCACAGGATTTTTCAAAAATTCCTAGTTTATTAGCTATCTGCCGATTTCTGAAAAATAATCATTTTTCACATTTTTAGAACATTAAACGGGAAAAAAGATCCGTCTTTCAGAAATCGGCAAATACGGTAACACTGTAATATAGTGCCACGGCGTTCTATTTTTTGGATGGGTGTTTTGGGATGATGCGCGGTAACAAGAATAGGTCCTCTACTTGTTTAACAGGATATCAAAATGACAAAAAGTAATGTGAAATTCCTAGATTCTGCTGTTGCCATGTTAATCAAACACGAAAACTTTGTTTTACTCCCTACAATCACCTTGTATTTTTCAAAATGATCGGAAACTGGACAGTTGAGCTCCAGACTCTTGAAAATTCTAAAAATCGACTGAAAATTTAGTTTTGTATATCCGGAACTGTACGTCCCAAAACTATTAATACAAATAGTTGCAACCAGTGAAAAAAATCGGAAAATGCTTTTTCGTATAAAAAATACGGTACAACGGATTTCCCAGGGAAAAAAAACCAACTAAAAACGAAATCAAGCATGAAATTTACTCTGTGAAATCCCAAATCATTTAATGGCTTGATGATTTCGATTTCTTCCATATGTAAAGACGATGGGAAACGGAAAAGTCCGCCGCTCCTCATAATAATTGCGAAACCCCAAAACAGGACATGCAAATTATTGTTACATATAAGCGCCCACCGCTAAAAACGGAGTGACTACTACAAAAGTGCGTTTTGTGTTAATATTATTATTATTGTTATTTCTATATAAATTCCCGGTGATGACTGGTCGGTTTATCACGCTCACCGCATTAGCGTAAAAGGGGTGGGGTGAGTGGTGTAAAAATTTTGGGAGAATTAAAGTGAGATATGCAATGAGGTTCAG</canonical>
            <polymorphic>TGGCCATTTTGACCAGTTTCGGGAGTTTGGAGCTCGGCTGTCAAGTTTCCACTCACTTTGAAAAATTTGGAGAGTATTAAACTGACCTAAATTCAAATTTTTGCATTCACAGGATTTTTCAAAAATTCCTAGTTTATTAGCTATCTGCCGATTTCTGAAAAATAATCATTTTTCACATTTTTAGAACATTAAACGGGAAAAAAGATCCGTCTTTCAGAAATCGGCAAATACGGTAACACTGTAATATAGTGCCACGGCGTTCTATTTTTTGGATGGGTGTTTTGGGATGATGCGCGGTAACAAGAATAGGTCCTCTACTTGTTTAACAGGATATCAAAATGACAAAAAGTAATGTGAAATTCCTAGATTCTGCTGTTGCCATGTTAATCAAACACGAAAACTTTGTTTTACTCCCTACAATCACCTTGTATTTTTCAAAATGATCGGAAACTGGACAGTTGAGCTCCAGACTCTTGAAAATTCTAAAAATCGACTGAAAMTTTAGTTTTGTATATCCGGAACTGTACGTCCCAAAACTATTAATACAAATAGTTGCAACCAGTGAAAAAAATCGGAAAATGCTTTTTCGTATAAAAAATACGGTACAACGGATTTCCCAGGGAAAAAAAACCAACTAAAAACGAAATCAAGCATGAAATTTACTCTGTGAAATCCCAAATCATTTAATGGCTTGATGATTTCGATTTCTTCCATATGTAAAGACGATGGGAAACGGAAAAGTCCGCCGCTCCTCATAATAATTGCGAAACCCCAAAACAGGACATGCAAATTATTGTTACATATAAGCGCCCACCGCTAAAAACGGAGTGACTACTACAAAAGTGCGTTTTGTGTTAATATTATTATTATTGTTATTTCTATATAAATTCCCGGTGATGACTGGTCGGTTTATCACGCTCACCGCATTAGCGTAAAAGGGGTGGGGTGAGTGGTGTAAAAATTTTGGGAGAATTAAAGTGAGATATGCAATGAGGTTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>234 229 158 121 74 63 41 28 26 20 6</canonical_bands>
                <polymorphic_bands>234 229 178 121 74 63 41 28 26 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>234 158 121 103 97 74 63 30 29 28 26 20 11 6</canonical_bands>
                <polymorphic_bands>234 178 121 103 97 74 63 30 29 28 26 11 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAATTTTCGAGAGTCATCAA</pcr_primer_p1>
		<pcr_primer_p2>CACTGGTTGCAACTATTTGTATT</pcr_primer_p2>
		<pcr_amplicon_size>633</pcr_amplicon_size>
		<canonical_amplicon>AATTTAGTTTTGTATATCCGGAACTGTACGTCCCAAAACTATTAATACAAATAGTTGCAACCAGTG</canonical_amplicon>
		<polymorphic_amplicon>AMTTTAGTTTTGTATATCCGGAACTGTACGTCCCAAAACTATTAATACAAATAGTTGCAACCAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27562</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>258450</contig_pos>
        <strand>+</strand>
        <context>CATGAATTTT[A/G]AAGCTGTGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCTTGGCAGTTCCAGGAATCAAGGAATTAAAATCGTGTCATGAATTTT</left_flank>
        <right_flank>AAGCTGTGTATCTTCCCCAACCTCAAATATTCCCTAAAGTTTTAATTAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGAATAATTGTAGTCATACGTTTGTTGTAACTAAAGAAAACATGACTGTGACATAAAACATGACAAAAGGTGCAAGTCGATAATGTTTCAAAATAAATTGAAAAAAAGAACTGAAGAGAGTGGGATTCGAACCCACGCCCCCGAAGGGACTGGTGCCTTAAACCAGCGCCTTAGACCGCTCGGCCATCTCTCCACATGAGTTTCTTTGTCAGTGCTAGCTTATCAACATGATATCGACTCTCGGCTGCTGGAATTACCAATTCGTAGTCTAGCAGAAATCACAAGTGGCTCTGATTGACACTTTACCACATTTTAGAAAATGTTTCTTTGAAGAATATTGTTTTGAATGTTCGCAATCATTCTGCCATTGAACACCAGAAAAAGTCAACCGGCATTTATCTTTTTTTTCTCTCAAAACCAGCACAGTGAATGTGTAAAAAATGACATTTCCTTGGCAGTTCCAGGAATCAAGGAATTAAAATCGTGTCATGAATTTTGAAGCTGTGTATCTTCCCCAACCTCAAATATTCCCTAAAGTTTTAATTAAAAGTTTAGTTTTTCTCCGTCGGAATTCATTGGGGTGTCTATGACTCATCAGCCATTTCATTCACAGCTGTCAGCGGCCAACAACACAATCACCTGATGATAAAAAGAAAGAAGATATAAAACAACGAAGTATTGAACACAATTCATAGTTCAATTTTCATTCTCTATGTGTTCCAGCACAATAATTCTTGCTATTTCCACGCTAATCTGTATTCTGTCAAAGCATATCGTTACAGCTGCAGGAAGTAAAATTTAGATTGCCTTATAAATAATATATGTAACAAATTTCAGAACAATGCCCCGATATTGCAACTGTCAGGGACAATAAGGATGACACAGTTGACGCGAAAATAATGTAAGTCAGCATACATTATTTTATAACCTATTTTTCTGTTATTCGAGATATTTCGAAGGTTCTGGCCAACAAATTGCTCACATTTCGTGTGAAGGAG</canonical>
            <polymorphic>TTGGAATAATTGTAGTCATACGTTTGTTGTAACTAAAGAAAACATGACTGTGACATAAAACATGACAAAAGGTGCAAGTCGATAATGTTTCAAAATAAATTGAAAAAAAGAACTGAAGAGAGTGGGATTCGAACCCACGCCCCCGAAGGGACTGGTGCCTTAAACCAGCGCCTTAGACCGCTCGGCCATCTCTCCACATGAGTTTCTTTGTCAGTGCTAGCTTATCAACATGATATCGACTCTCGGCTGCTGGAATTACCAATTCGTAGTCTAGCAGAAATCACAAGTGGCTCTGATTGACACTTTACCACATTTTAGAAAATGTTTCTTTGAAGAATATTGTTTTGAATGTTCGCAATCATTCTGCCATTGAACACCAGAAAAAGTCAACCGGCATTTATCTTTTTTTTCTCTCAAAACCAGCACAGTGAATGTGTAAAAAATGACATTTCCTTGGCAGTTCCAGGAATCAAGGAATTAAAATCGTGTCATGAATTTTRAAGCTGTGTATCTTCCCCAACCTCAAATATTCCCTAAAGTTTTAATTAAAAGTTTAGTTTTTCTCCGTCGGAATTCATTGGGGTGTCTATGACTCATCAGCCATTTCATTCACAGCTGTCAGCGGCCAACAACACAATCACCTGATGATAAAAAGAAAGAAGATATAAAACAACGAAGTATTGAACACAATTCATAGTTCAATTTTCATTCTCTATGTGTTCCAGCACAATAATTCTTGCTATTTCCACGCTAATCTGTATTCTGTCAAAGCATATCGTTACAGCTGCAGGAAGTAAAATTTAGATTGCCTTATAAATAATATATGTAACAAATTTCAGAACAATGCCCCGATATTGCAACTGTCAGGGACAATAAGGATGACACAGTTGACGCGAAAATAATGTAAGTCAGCATACATTATTTTATAACCTATTTTTCTGTTATTCGAGATATTTCGAAGGTTCTGGCCAACAAATTGCTCACATTTCGTGTGAAGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTCTCAAAACCAGCAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTATCATCAGGTGATTGTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTCTCAAAACCAGCACAGTGAATGTGTAAAAAATGACATTTCCTTGGCAGTTCCAGGAATCAAGGAATTAAAATCGTGTCATGAATTTTGAAGCTGTGTATCTTCCCCAACCTCAAATATTCCCTAAAGTTTTAATTAAAAGTTTAGTTTTTCTCCGTCGGAATTCATTGGGGTGTCTATGACTCATCAGCCATTTCATTCACAGCTGTCAGCGGCCAACAACACAATCACCTGATGATAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTCTCAAAACCAGCACAGTGAATGTGTAAAAAATGACATTTCCTTGGCAGTTCCAGGAATCAAGGAATTAAAATCGTGTCATGAATTTTRAAGCTGTGTATCTTCCCCAACCTCAAATATTCCCTAAAGTTTTAATTAAAAGTTTAGTTTTTCTCCGTCGGAATTCATTGGGGTGTCTATGACTCATCAGCCATTTCATTCACAGCTGTCAGCGGCCAACAACACAATCACCTGATGATAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27563</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>269726</contig_pos>
        <strand>+</strand>
        <context>CTCCCCAAAT[G/T]GACCACCGCC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAACTGGATGATGGAAAGAACGGTGCAAACATTGGCTTTTCTCCCCAAAT</left_flank>
        <right_flank>GACCACCGCCTCCATGTTTGTGCATATTTAGGGGGTCTCTGCTGCACGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGACAATTCTGGCCCACACAACAATGACGAAACCCTACTGGGGTCGATTGGACGGTTGGGAGAGAGGAATTGGATGCGGCTGCTAAGAGAGAAGACAACAATGGCGGTTATATTATATGGTATGCGAGGAGAGGGAGGGTGTGTGGAAGACAAAAAAGAGGGCACACGGAGGAGAAGGGCCACCGAAGCGCGACTCAAGGTTAGGCCCACTCTTCACAGTCCCCAGGTCAATCTAGTGATGACTGACGCGTCCTCGGCATGAGGGTTGTCAAGTCATTTTGTTTCTGTTTCTGTTTCCCCCTGGGTTGTTTTTTGTACAAAAGAATAAGGAGAAGGAGGAAAAGAGGATTTCGTTCTCTTTTTTGCCTTCTTTTTGGAGCGATTTTGAGGTTGTTTCGACTTTGCGAGGGCAAAGGCGAGCAACTAGACGAACCAGAAACCAATTGTTCAACTGGATGATGGAAAGAACGGTGCAAACATTGGCTTTTCTCCCCAAATTGACCACCGCCTCCATGTTTGTGCATATTTAGGGGGTCTCTGCTGCACGAAAAATGGCCTCTTCTTGTATGAAAGGAGGGTTCTTTCCGCGCGGCGCGTTAAGCGGTGGGTGGTGTTGGCGTTAAGGCGGTCGGCACGGATCAAGGTTATACTATTTCGTACGAGAAACCAAAAAAGGGCACCTTGTAAGAGATTGTTAGAGCTGGAGTAGATGTCAGGGCGTGATAAATATGGGGGTTAGTGGTGGGAAGAGATGGATAGATAAACAAATAATGCATAACGACGAATCTGGCACAAAAATACTATTCAATACTGATTAAGGAAGTTTAAACGGGAAAATTTTCAACCGGCCAGTTCGAAAATTCCTTCGTACGAATAAACCCACCATTGAATGCCAAAATTTTGTGTCACCATCACCATGTTATTGCATCCTTCCAGAAACTAGTTCGATTTTTTCATTGAAATACTATAATATCCCAAAAAAATAAAATACATTGGAAT</canonical>
            <polymorphic>AAGACAATTCTGGCCCACACAACAATGACGAAACCCTACTGGGGTCGATTGGACGGTTGGGAGAGAGGAATTGGATGCGGCTGCTAAGAGAGAAGACAACAATGGCGGTTATATTATATGGTATGCGAGGAGAGGGAGGGTGTGTGGAAGACAAAAAAGAGGGCACACGGAGGAGAAGGGCCACCGAAGCGCGACTCAAGGTTAGGCCCACTCTTCACAGTCCCCAGGTCAATCTAGTGATGACTGACGCGTCCTCGGCATGAGGGTTGTCAAGTCATTTTGTTTCTGTTTCTGTTTCCCCCTGGGTTGTTTTTTGTACAAAAGAATAAGGAGAAGGAGGAAAAGAGGATTTCGTTCTCTTTTTTGCCTTCTTTTTGGAGCGATTTTGAGGTTGTTTCGACTTTGCGAGGGCAAAGGCGAGCAACTAGACGAACCAGAAACCAATTGTTCAACTGGATGATGGAAAGAACGGTGCAAACATTGGCTTTTCTCCCCAAATKGACCACCGCCTCCATGTTTGTGCATATTTAGGGGGTCTCTGCTGCACGAAAAATGGCCTCTTCTTGTATGAAAGGAGGGTTCTTTCCGCGCGGCGCGTTAAGCGGTGGGTGGTGTTGGCGTTAAGGCGGTCGGCACGGATCAAGGTTATACTATTTCGTACGAGAAACCAAAAAAGGGCACCTTGTAAGAGATTGTTAGAGCTGGAGTAGATGTCAGGGCGTGATAAATATGGGGGTTAGTGGTGGGAAGAGATGGATAGATAAACAAATAATGCATAACGACGAATCTGGCACAAAAATACTATTCAATACTGATTAAGGAAGTTTAAACGGGAAAATTTTCAACCGGCCAGTTCGAAAATTCCTTCGTACGAATAAACCCACCATTGAATGCCAAAATTTTGTGTCACCATCACCATGTTATTGCATCCTTCCAGAAACTAGTTCGATTTTTTCATTGAAATACTATAATATCCCAAAAAAATAAAATACATTGGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>374 340 103 63 54 38 23 5</canonical_bands>
                <polymorphic_bands>394 374 103 63 38 23 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAATAAGGAGAAGGAGGA</pcr_primer_p1>
		<pcr_primer_p2>TACAAGAAGAGGCCATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAATAAGGAGAAGGAGGAAAAGAGGATTTCGTTCTCTTTTTTGCCTTCTTTTTGGAGCGATTTTGAGGTTGTTTCGACTTTGCGAGGGCAAAGGCGAGCAACTAGACGAACCAGAAACCAATTGTTCAACTGGATGATGGAAAGAACGGTGCAAACATTGGCTTTTCTCCCCAAATTGACCACCGCCTCCATGTTTGTGCATATTTAGGGGGTCTCTGCTGCACGAAAAATGGCCTCTTCTTGTA</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAATAAGGAGAAGGAGGAAAAGAGGATTTCGTTCTCTTTTTTGCCTTCTTTTTGGAGCGATTTTGAGGTTGTTTCGACTTTGCGAGGGCAAAGGCGAGCAACTAGACGAACCAGAAACCAATTGTTCAACTGGATGATGGAAAGAACGGTGCAAACATTGGCTTTTCTCCCCAAATKGACCACCGCCTCCATGTTTGTGCATATTTAGGGGGTCTCTGCTGCACGAAAAATGGCCTCTTCTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27564</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>308553</contig_pos>
        <strand></strand>
        <context>TAATTCATGT[A/G]RAGTTCAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAGTATCCTGTAAAGCTGTCATTGTGGTCAGCAGTTTTTTAATTCATGT</left_flank>
        <right_flank>GAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATCCATTCCCAAATACAAAAGCATCCACCTTGCCATATGTTTTGGGTTCAAGAGAGCTGTTCCCGCATAGGACTTCCAATAATCCTGGTATGACGGACATGTGAAATTGAAAACATGTGTGACCGGATAGATCAGTATCTGACCCCTAAGAACGTCCCGGTTTTCTCGATGTAATCGTTGACACACAACTGCCGCCAGGTTTCCGCCAGCACTATCTCCAGAAATCAAAACTTTCTTTTTGTTGAACGGGAGGTCCGGCAATCTAAATAGATGAAATTATAATTCTTTAGATAATTGAATGGTGAGATACCCATTTTCACAGAGTTCCGATACAACTGCATAACAATCGTTGAGTCCAGCAGGGAATGGGTGTTCTGGAGCAAGACGATAGTCAATGGAGACTCCGTGGCAACCGATTCTGCGGCAAAGTTGATACATTATTCCGTCATAGTATCCTGTAAAGCTGTCATTGTGGTCAGCAGTTTTTTAATTCATGTAGAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATTTGCTGAATTTTTCTAATATATCGTCTAAATTACATTCTAAATTGTCTATTTCTGTGAAACCTGTATTATAAAGGCAGACCATTATACATTTCCGCTGGACCCCGTACTTCCAAAGAGCGCTTCTAGTACAAGGGTTTTCCGATCGGGAGGAGTTTTTTCAATTTTCCCGTTGCCCTAAAGTTTTTATTGAAATTTCGGCAGAATATAATTCCCGGAATAATATTCACTGCGAATCAACGAAAATTCTTGATTTCAAACAACGAATTTCAAAGGGAGCTCTTCTATTCTTTGAACCTCTCTTGGAATGTCCTTCTATTAGAGGGTCCAGTAGTACTCACTTGCTTCACCAACACACCATCCACCTCCATGAATGAAAATGAGAAGACCATCGTTTTTCGATTCCTCGACTTTGTAAGTAATGCAACTAACTCCTTGGATTCTGGTTCG</canonical>
            <polymorphic>GCATCCATTCCCAAATACAAAAGCATCCACCTTGCCATATGTTTTGGGTTCAAGAGAGCTGTTCCCGCATAGGACTTCCAATAATCCTGGTATGACGGACATGTGAAATTGAAAACATGTGTGACCGGATAGATCAGTATCTGACCCCTAAGAACGTCCCGGTTTTCTCGATGTAATCGTTGACACACAACTGCCGCCAGGTTTCCGCCAGCACTATCTCCAGAAATCAAAACTTTCTTTTTGTTGAACGGGAGGTCCGGCAATCTAAATAGATGAAATTATAATTCTTTAGATAATTGAATGGTGAGATACCCATTTTCACAGAGTTCCGATACAACTGCATAACAATCGTTGAGTCCAGCAGGGAATGGGTGTTCTGGAGCAAGACGATAGTCAATGGAGACTCCGTGGCAACCGATTCTGCGGCAAAGTTGATACATTATTCCGTCATAGTATCCTGTAAAGCTGTCATTGTGGTCAGCAGTTTTTTAATTCATGTRGAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATTTGCTGAATTTTTCTAATATATCGTCTAAATTACATTCTAAATTGTCTATTTCTGTGAAACCTGTATTATAAAGGCAGACCATTATACATTTCCGCTGGACCCCGTACTTCCAAAGAGCGCTTCTAGTACAAGGGTTTTCCGATCGGGAGGAGTTTTTTCAATTTTCCCGTTGCCCTAAAGTTTTTATTGAAATTTCGGCAGAATATAATTCCCGGAATAATATTCACTGCGAATCAACGAAAATTCTTGATTTCAAACAACGAATTTCAAAGGGAGCTCTTCTATTCTTTGAACCTCTCTTGGAATGTCCTTCTATTAGAGGGTCCAGTAGTACTCACTTGCTTCACCAACACACCATCCACCTCCATGAATGAAAATGAGAAGACCATCGTTTTTCGATTCCTCGACTTTGTAAGTAATGCAACTAACTCCTTGGATTCTGGTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGACGATAGTCAATGGAGACT</pcr_primer_p1>
		<pcr_primer_p2>CTTTATAATACAGGTTTCACAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAGACGATAGTCAATGGAGACTCCGTGGCAACCGATTCTGCGGCAAAGTTGATACATTATTCCGTCATAGTATCCTGTAAAGCTGTCATTGTGGTCAGCAGTTTTTTAATTCATGTAGAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATTTGCTGAATTTTTCTAATATATCGTCTAAATTACATTCTAAATTGTCTATTTCTGTGAAACCTGTATTATAAAG</canonical_amplicon>
		<polymorphic_amplicon>AAGACGATAGTCAATGGAGACTCCGTGGCAACCGATTCTGCGGCAAAGTTGATACATTATTCCGTCATAGTATCCTGTAAAGCTGTCATTGTGGTCAGCAGTTTTTTAATTCATGTRGAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATTTGCTGAATTTTTCTAATATATCGTCTAAATTACATTCTAAATTGTCTATTTCTGTGAAACCTGTATTATAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27565</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>308554</contig_pos>
        <strand>+</strand>
        <context>AATTCATGTR[A/G]AGTTCAAATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGTATCCTGTAAAGCTGTCATTGTGGTCAGCAGTTTTTTAATTCATGTA</left_flank>
        <right_flank>AGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCCATTCCCAAATACAAAAGCATCCACCTTGCCATATGTTTTGGGTTCAAGAGAGCTGTTCCCGCATAGGACTTCCAATAATCCTGGTATGACGGACATGTGAAATTGAAAACATGTGTGACCGGATAGATCAGTATCTGACCCCTAAGAACGTCCCGGTTTTCTCGATGTAATCGTTGACACACAACTGCCGCCAGGTTTCCGCCAGCACTATCTCCAGAAATCAAAACTTTCTTTTTGTTGAACGGGAGGTCCGGCAATCTAAATAGATGAAATTATAATTCTTTAGATAATTGAATGGTGAGATACCCATTTTCACAGAGTTCCGATACAACTGCATAACAATCGTTGAGTCCAGCAGGGAATGGGTGTTCTGGAGCAAGACGATAGTCAATGGAGACTCCGTGGCAACCGATTCTGCGGCAAAGTTGATACATTATTCCGTCATAGTATCCTGTAAAGCTGTCATTGTGGTCAGCAGTTTTTTAATTCATGTAGAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATTTGCTGAATTTTTCTAATATATCGTCTAAATTACATTCTAAATTGTCTATTTCTGTGAAACCTGTATTATAAAGGCAGACCATTATACATTTCCGCTGGACCCCGTACTTCCAAAGAGCGCTTCTAGTACAAGGGTTTTCCGATCGGGAGGAGTTTTTTCAATTTTCCCGTTGCCCTAAAGTTTTTATTGAAATTTCGGCAGAATATAATTCCCGGAATAATATTCACTGCGAATCAACGAAAATTCTTGATTTCAAACAACGAATTTCAAAGGGAGCTCTTCTATTCTTTGAACCTCTCTTGGAATGTCCTTCTATTAGAGGGTCCAGTAGTACTCACTTGCTTCACCAACACACCATCCACCTCCATGAATGAAAATGAGAAGACCATCGTTTTTCGATTCCTCGACTTTGTAAGTAATGCAACTAACTCCTTGGATTCTGGTTCGT</canonical>
            <polymorphic>CATCCATTCCCAAATACAAAAGCATCCACCTTGCCATATGTTTTGGGTTCAAGAGAGCTGTTCCCGCATAGGACTTCCAATAATCCTGGTATGACGGACATGTGAAATTGAAAACATGTGTGACCGGATAGATCAGTATCTGACCCCTAAGAACGTCCCGGTTTTCTCGATGTAATCGTTGACACACAACTGCCGCCAGGTTTCCGCCAGCACTATCTCCAGAAATCAAAACTTTCTTTTTGTTGAACGGGAGGTCCGGCAATCTAAATAGATGAAATTATAATTCTTTAGATAATTGAATGGTGAGATACCCATTTTCACAGAGTTCCGATACAACTGCATAACAATCGTTGAGTCCAGCAGGGAATGGGTGTTCTGGAGCAAGACGATAGTCAATGGAGACTCCGTGGCAACCGATTCTGCGGCAAAGTTGATACATTATTCCGTCATAGTATCCTGTAAAGCTGTCATTGTGGTCAGCAGTTTTTTAATTCATGTARAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATTTGCTGAATTTTTCTAATATATCGTCTAAATTACATTCTAAATTGTCTATTTCTGTGAAACCTGTATTATAAAGGCAGACCATTATACATTTCCGCTGGACCCCGTACTTCCAAAGAGCGCTTCTAGTACAAGGGTTTTCCGATCGGGAGGAGTTTTTTCAATTTTCCCGTTGCCCTAAAGTTTTTATTGAAATTTCGGCAGAATATAATTCCCGGAATAATATTCACTGCGAATCAACGAAAATTCTTGATTTCAAACAACGAATTTCAAAGGGAGCTCTTCTATTCTTTGAACCTCTCTTGGAATGTCCTTCTATTAGAGGGTCCAGTAGTACTCACTTGCTTCACCAACACACCATCCACCTCCATGAATGAAAATGAGAAGACCATCGTTTTTCGATTCCTCGACTTTGTAAGTAATGCAACTAACTCCTTGGATTCTGGTTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGACGATAGTCAATGGAGACT</pcr_primer_p1>
		<pcr_primer_p2>CTTTATAATACAGGTTTCACAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAGACGATAGTCAATGGAGACTCCGTGGCAACCGATTCTGCGGCAAAGTTGATACATTATTCCGTCATAGTATCCTGTAAAGCTGTCATTGTGGTCAGCAGTTTTTTAATTCATGTAGAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATTTGCTGAATTTTTCTAATATATCGTCTAAATTACATTCTAAATTGTCTATTTCTGTGAAACCTGTATTATAAAG</canonical_amplicon>
		<polymorphic_amplicon>AAGACGATAGTCAATGGAGACTCCGTGGCAACCGATTCTGCGGCAAAGTTGATACATTATTCCGTCATAGTATCCTGTAAAGCTGTCATTGTGGTCAGCAGTTTTTTAATTCATGTARAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATTTGCTGAATTTTTCTAATATATCGTCTAAATTACATTCTAAATTGTCTATTTCTGTGAAACCTGTATTATAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27566</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>308607</contig_pos>
        <strand>+</strand>
        <context>TACGTTTATT[C/T]GCTGAATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATT</left_flank>
        <right_flank>GCTGAATTTTTCTAATATATCGTCTAAATTACATTCTAAATTGTCTATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGCTGTTCCCGCATAGGACTTCCAATAATCCTGGTATGACGGACATGTGAAATTGAAAACATGTGTGACCGGATAGATCAGTATCTGACCCCTAAGAACGTCCCGGTTTTCTCGATGTAATCGTTGACACACAACTGCCGCCAGGTTTCCGCCAGCACTATCTCCAGAAATCAAAACTTTCTTTTTGTTGAACGGGAGGTCCGGCAATCTAAATAGATGAAATTATAATTCTTTAGATAATTGAATGGTGAGATACCCATTTTCACAGAGTTCCGATACAACTGCATAACAATCGTTGAGTCCAGCAGGGAATGGGTGTTCTGGAGCAAGACGATAGTCAATGGAGACTCCGTGGCAACCGATTCTGCGGCAAAGTTGATACATTATTCCGTCATAGTATCCTGTAAAGCTGTCATTGTGGTCAGCAGTTTTTTAATTCATGTAGAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATTTGCTGAATTTTTCTAATATATCGTCTAAATTACATTCTAAATTGTCTATTTCTGTGAAACCTGTATTATAAAGGCAGACCATTATACATTTCCGCTGGACCCCGTACTTCCAAAGAGCGCTTCTAGTACAAGGGTTTTCCGATCGGGAGGAGTTTTTTCAATTTTCCCGTTGCCCTAAAGTTTTTATTGAAATTTCGGCAGAATATAATTCCCGGAATAATATTCACTGCGAATCAACGAAAATTCTTGATTTCAAACAACGAATTTCAAAGGGAGCTCTTCTATTCTTTGAACCTCTCTTGGAATGTCCTTCTATTAGAGGGTCCAGTAGTACTCACTTGCTTCACCAACACACCATCCACCTCCATGAATGAAAATGAGAAGACCATCGTTTTTCGATTCCTCGACTTTGTAAGTAATGCAACTAACTCCTTGGATTCTGGTTCGTTTTTTCTGAAAAAAAATTTTTGAGAGATTATTATTCTTCACTATATCCTCACG</canonical>
            <polymorphic>AGAGCTGTTCCCGCATAGGACTTCCAATAATCCTGGTATGACGGACATGTGAAATTGAAAACATGTGTGACCGGATAGATCAGTATCTGACCCCTAAGAACGTCCCGGTTTTCTCGATGTAATCGTTGACACACAACTGCCGCCAGGTTTCCGCCAGCACTATCTCCAGAAATCAAAACTTTCTTTTTGTTGAACGGGAGGTCCGGCAATCTAAATAGATGAAATTATAATTCTTTAGATAATTGAATGGTGAGATACCCATTTTCACAGAGTTCCGATACAACTGCATAACAATCGTTGAGTCCAGCAGGGAATGGGTGTTCTGGAGCAAGACGATAGTCAATGGAGACTCCGTGGCAACCGATTCTGCGGCAAAGTTGATACATTATTCCGTCATAGTATCCTGTAAAGCTGTCATTGTGGTCAGCAGTTTTTTAATTCATGTAGAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATTYGCTGAATTTTTCTAATATATCGTCTAAATTACATTCTAAATTGTCTATTTCTGTGAAACCTGTATTATAAAGGCAGACCATTATACATTTCCGCTGGACCCCGTACTTCCAAAGAGCGCTTCTAGTACAAGGGTTTTCCGATCGGGAGGAGTTTTTTCAATTTTCCCGTTGCCCTAAAGTTTTTATTGAAATTTCGGCAGAATATAATTCCCGGAATAATATTCACTGCGAATCAACGAAAATTCTTGATTTCAAACAACGAATTTCAAAGGGAGCTCTTCTATTCTTTGAACCTCTCTTGGAATGTCCTTCTATTAGAGGGTCCAGTAGTACTCACTTGCTTCACCAACACACCATCCACCTCCATGAATGAAAATGAGAAGACCATCGTTTTTCGATTCCTCGACTTTGTAAGTAATGCAACTAACTCCTTGGATTCTGGTTCGTTTTTTCTGAAAAAAAATTTTTGAGAGATTATTATTCTTCACTATATCCTCACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATAGTATCCTGTAAAGCTGTCAT</pcr_primer_p1>
		<pcr_primer_p2>GATCGGAAAACCCTTGTACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATAGTATCCTGTAAAGCTGTCATTGTGGTCAGCAGTTTTTTAATTCATGTAGAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATTTGCTGAATTTTTCTAATATATCGTCTAAATTACATTCTAAATTGTCTATTTCTGTGAAACCTGTATTATAAAGGCAGACCATTATACATTTCCGCTGGACCCCGTACTTCCAAAGAGCGCTTCTAGTACAAGGGTTTTCCGATC</canonical_amplicon>
		<polymorphic_amplicon>CATAGTATCCTGTAAAGCTGTCATTGTGGTCAGCAGTTTTTTAATTCATGTAGAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATTYGCTGAATTTTTCTAATATATCGTCTAAATTACATTCTAAATTGTCTATTTCTGTGAAACCTGTATTATAAAGGCAGACCATTATACATTTCCGCTGGACCCCGTACTTCCAAAGAGCGCTTCTAGTACAAGGGTTTTCCGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27567</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>308650</contig_pos>
        <strand>+</strand>
        <context>ATTCTAAATT[A/G]TCTATTTCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTATTTGCTGAATTTTTCTAATATATCGTCTAAATTACATTCTAAATT</left_flank>
        <right_flank>TCTATTTCTGTGAAACCTGTATTATAAAGGCAGACCATTATACATTTCCG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACATGTGAAATTGAAAACATGTGTGACCGGATAGATCAGTATCTGACCCCTAAGAACGTCCCGGTTTTCTCGATGTAATCGTTGACACACAACTGCCGCCAGGTTTCCGCCAGCACTATCTCCAGAAATCAAAACTTTCTTTTTGTTGAACGGGAGGTCCGGCAATCTAAATAGATGAAATTATAATTCTTTAGATAATTGAATGGTGAGATACCCATTTTCACAGAGTTCCGATACAACTGCATAACAATCGTTGAGTCCAGCAGGGAATGGGTGTTCTGGAGCAAGACGATAGTCAATGGAGACTCCGTGGCAACCGATTCTGCGGCAAAGTTGATACATTATTCCGTCATAGTATCCTGTAAAGCTGTCATTGTGGTCAGCAGTTTTTTAATTCATGTAGAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATTTGCTGAATTTTTCTAATATATCGTCTAAATTACATTCTAAATTGTCTATTTCTGTGAAACCTGTATTATAAAGGCAGACCATTATACATTTCCGCTGGACCCCGTACTTCCAAAGAGCGCTTCTAGTACAAGGGTTTTCCGATCGGGAGGAGTTTTTTCAATTTTCCCGTTGCCCTAAAGTTTTTATTGAAATTTCGGCAGAATATAATTCCCGGAATAATATTCACTGCGAATCAACGAAAATTCTTGATTTCAAACAACGAATTTCAAAGGGAGCTCTTCTATTCTTTGAACCTCTCTTGGAATGTCCTTCTATTAGAGGGTCCAGTAGTACTCACTTGCTTCACCAACACACCATCCACCTCCATGAATGAAAATGAGAAGACCATCGTTTTTCGATTCCTCGACTTTGTAAGTAATGCAACTAACTCCTTGGATTCTGGTTCGTTTTTTCTGAAAAAAAATTTTTGAGAGATTATTATTCTTCACTATATCCTCACGGTCACCCCTTTTGGCGGTCCCATCGGCACTAGGAACCCAACCC</canonical>
            <polymorphic>GACATGTGAAATTGAAAACATGTGTGACCGGATAGATCAGTATCTGACCCCTAAGAACGTCCCGGTTTTCTCGATGTAATCGTTGACACACAACTGCCGCCAGGTTTCCGCCAGCACTATCTCCAGAAATCAAAACTTTCTTTTTGTTGAACGGGAGGTCCGGCAATCTAAATAGATGAAATTATAATTCTTTAGATAATTGAATGGTGAGATACCCATTTTCACAGAGTTCCGATACAACTGCATAACAATCGTTGAGTCCAGCAGGGAATGGGTGTTCTGGAGCAAGACGATAGTCAATGGAGACTCCGTGGCAACCGATTCTGCGGCAAAGTTGATACATTATTCCGTCATAGTATCCTGTAAAGCTGTCATTGTGGTCAGCAGTTTTTTAATTCATGTAGAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATTTGCTGAATTTTTCTAATATATCGTCTAAATTACATTCTAAATTRTCTATTTCTGTGAAACCTGTATTATAAAGGCAGACCATTATACATTTCCGCTGGACCCCGTACTTCCAAAGAGCGCTTCTAGTACAAGGGTTTTCCGATCGGGAGGAGTTTTTTCAATTTTCCCGTTGCCCTAAAGTTTTTATTGAAATTTCGGCAGAATATAATTCCCGGAATAATATTCACTGCGAATCAACGAAAATTCTTGATTTCAAACAACGAATTTCAAAGGGAGCTCTTCTATTCTTTGAACCTCTCTTGGAATGTCCTTCTATTAGAGGGTCCAGTAGTACTCACTTGCTTCACCAACACACCATCCACCTCCATGAATGAAAATGAGAAGACCATCGTTTTTCGATTCCTCGACTTTGTAAGTAATGCAACTAACTCCTTGGATTCTGGTTCGTTTTTTCTGAAAAAAAATTTTTGAGAGATTATTATTCTTCACTATATCCTCACGGTCACCCCTTTTGGCGGTCCCATCGGCACTAGGAACCCAACCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATAGTATCCTGTAAAGCTGTCAT</pcr_primer_p1>
		<pcr_primer_p2>GATCGGAAAACCCTTGTACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATAGTATCCTGTAAAGCTGTCATTGTGGTCAGCAGTTTTTTAATTCATGTAGAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATTTGCTGAATTTTTCTAATATATCGTCTAAATTACATTCTAAATTGTCTATTTCTGTGAAACCTGTATTATAAAGGCAGACCATTATACATTTCCGCTGGACCCCGTACTTCCAAAGAGCGCTTCTAGTACAAGGGTTTTCCGATC</canonical_amplicon>
		<polymorphic_amplicon>CATAGTATCCTGTAAAGCTGTCATTGTGGTCAGCAGTTTTTTAATTCATGTAGAGTTCAAATCGCCTGAATTTTCAAAGATCTTATTTTATAAAATACGTTTATTTGCTGAATTTTTCTAATATATCGTCTAAATTACATTCTAAATTRTCTATTTCTGTGAAACCTGTATTATAAAGGCAGACCATTATACATTTCCGCTGGACCCCGTACTTCCAAAGAGCGCTTCTAGTACAAGGGTTTTCCGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27568</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>309856</contig_pos>
        <strand></strand>
        <context>ctaatagctg[T/A]aaaattagga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TAATGAAAACGTGAAAAAATTGGGTGACTTCAGAAATCGGCTAATAGCTG</left_flank>
        <right_flank>AAAATTAGGAGTTGTTCAAAAATTCTGTAAAAGGAAAGTTTTTAACCTAG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCGGAGATGTCGAGTGGCAATGGGATGTGTAGAAGGTAGAACGAGTAGGCGAAGAATAATATAACTAAGAGCCAGTACAACCAGGATAGCCACTCCATGGTAAGACACCAGAAAAAAAGATGGAGTTGTGTGTATGTGAATGTGTTATCAGGAACAATACAAGGGTAAATATGTAGAGTGATAATAAGTAATGGGGTCTTAAAGGGTTGATAGCACAATATAACGACTTTTTATGACTTGTTTATGTACAATTATGGAATGACTTGTTCAAAATGTCGTTGGCTACATTTTAGACAAGTGGTTTTCACAAAAAAGTTTGTTGTGGAACATCTCAAGAAGTTACAATCGAATTTTTCAAAATTTGAGAAAATTTGAAAACTTTGCATTCACAGATTTTTATGAAAACTCCTAGTTTTCCAGGTATTTGCCTATTTTTGGCCCATTTTTGTAATGAAAACGTGAAAAAATTGGGTGACTTCAGAAATCGGCTAATAGCTGTAAAATTAGGAGTTGTTCAAAAATTCTGTAAAAGGAAAGTTTTTAACCTAGATCTCATTGATCGTATTATAGAATACTTAGGTCCACAACAAAAGTTTACCACAGTATCTTTATAAGGTTTTTAGTGGAGCAAAATTAAGAGAAATCTAGGTTTGTTCAGAAAGAATTGTATTTGTTTTTTTTTGCTGAAAAAGATAACTCTGAATCTTCAGATTGTTTCTTGAAATATTAAAAAAAAAAACCTAGTTCATCACCTGCAATAAGAAGAAAAATGAAGAAATGTGGGATTGTAGGGAATGGGAACACAAACGATTACATCTTCCATGACATCTACGAACTGCATCGGTTTTATCCGATCGGTTTCATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGAGAGACAAGGACAGAGTGACACCTCTTTTTTCCCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGT</canonical>
            <polymorphic>GTCGGAGATGTCGAGTGGCAATGGGATGTGTAGAAGGTAGAACGAGTAGGCGAAGAATAATATAACTAAGAGCCAGTACAACCAGGATAGCCACTCCATGGTAAGACACCAGAAAAAAAGATGGAGTTGTGTGTATGTGAATGTGTTATCAGGAACAATACAAGGGTAAATATGTAGAGTGATAATAAGTAATGGGGTCTTAAAGGGTTGATAGCACAATATAACGACTTTTTATGACTTGTTTATGTACAATTATGGAATGACTTGTTCAAAATGTCGTTGGCTACATTTTAGACAAGTGGTTTTCACAAAAAAGTTTGTTGTGGAACATCTCAAGAAGTTACAATCGAATTTTTCAAAATTTGAGAAAATTTGAAAACTTTGCATTCACAGATTTTTATGAAAACTCCTAGTTTTCCAGGTATTTGCCTATTTTTGGCCCATTTTTGTAATGAAAACGTGAAAAAATTGGGTGACTTCAGAAATCGGCTAATAGCTGWAAAATTAGGAGTTGTTCAAAAATTCTGTAAAAGGAAAGTTTTTAACCTAGATCTCATTGATCGTATTATAGAATACTTAGGTCCACAACAAAAGTTTACCACAGTATCTTTATAAGGTTTTTAGTGGAGCAAAATTAAGAGAAATCTAGGTTTGTTCAGAAAGAATTGTATTTGTTTTTTTTTGCTGAAAAAGATAACTCTGAATCTTCAGATTGTTTCTTGAAATATTAAAAAAAAAAACCTAGTTCATCACCTGCAATAAGAAGAAAAATGAAGAAATGTGGGATTGTAGGGAATGGGAACACAAACGATTACATCTTCCATGACATCTACGAACTGCATCGGTTTTATCCGATCGGTTTCATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGAGAGACAAGGACAGAGTGACACCTCTTTTTTCCCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTTACAATCGAATTTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>CCACTAAAAACCTTATAAAGATACTG</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>GAAGTTACAATCGAATTTTTCAAAATTTGAGAAAATTTGAAAACTTTGCATTCACAGATTTTTATGAAAACTCCTAGTTTTCCAGGTATTTGCCTATTTTTGGCCCATTTTTGTAATGAAAACGTGAAAAAATTGGGTGACTTCAGAAATCGGCTAATAGCTGTAAAATTAGGAGTTGTTCAAAAATTCTGTAAAAGGAAAGTTTTTAACCTAGATCTCATTGATCGTATTATAGAATACTTAGGTCCACAACAAAAGTTTACCACAGTATCTTTATAAGGTTTTTAGTGG</canonical_amplicon>
		<polymorphic_amplicon>GAAGTTACAATCGAATTTTTCAAAATTTGAGAAAATTTGAAAACTTTGCATTCACAGATTTTTATGAAAACTCCTAGTTTTCCAGGTATTTGCCTATTTTTGGCCCATTTTTGTAATGAAAACGTGAAAAAATTGGGTGACTTCAGAAATCGGCTAATAGCTGWAAAATTAGGAGTTGTTCAAAAATTCTGTAAAAGGAAAGTTTTTAACCTAGATCTCATTGATCGTATTATAGAATACTTAGGTCCACAACAAAAGTTTACCACAGTATCTTTATAAGGTTTTTAGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27569</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>309903</contig_pos>
        <strand>+</strand>
        <context>agtttttaac[A/T]tagatctCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGTAAAATTAGGAGTTGTTCAAAAATTCTGTAAAAGGAAAGTTTTTAAC</left_flank>
        <right_flank>TAGATCTCATTGATCGTATTATAGAATACTTAGGTCCACAACAAAAGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGCGAAGAATAATATAACTAAGAGCCAGTACAACCAGGATAGCCACTCCATGGTAAGACACCAGAAAAAAAGATGGAGTTGTGTGTATGTGAATGTGTTATCAGGAACAATACAAGGGTAAATATGTAGAGTGATAATAAGTAATGGGGTCTTAAAGGGTTGATAGCACAATATAACGACTTTTTATGACTTGTTTATGTACAATTATGGAATGACTTGTTCAAAATGTCGTTGGCTACATTTTAGACAAGTGGTTTTCACAAAAAAGTTTGTTGTGGAACATCTCAAGAAGTTACAATCGAATTTTTCAAAATTTGAGAAAATTTGAAAACTTTGCATTCACAGATTTTTATGAAAACTCCTAGTTTTCCAGGTATTTGCCTATTTTTGGCCCATTTTTGTAATGAAAACGTGAAAAAATTGGGTGACTTCAGAAATCGGCTAATAGCTGTAAAATTAGGAGTTGTTCAAAAATTCTGTAAAAGGAAAGTTTTTAACCTAGATCTCATTGATCGTATTATAGAATACTTAGGTCCACAACAAAAGTTTACCACAGTATCTTTATAAGGTTTTTAGTGGAGCAAAATTAAGAGAAATCTAGGTTTGTTCAGAAAGAATTGTATTTGTTTTTTTTTGCTGAAAAAGATAACTCTGAATCTTCAGATTGTTTCTTGAAATATTAAAAAAAAAAACCTAGTTCATCACCTGCAATAAGAAGAAAAATGAAGAAATGTGGGATTGTAGGGAATGGGAACACAAACGATTACATCTTCCATGACATCTACGAACTGCATCGGTTTTATCCGATCGGTTTCATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGAGAGACAAGGACAGAGTGACACCTCTTTTTTCCCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGTCACATCTTCCTCTTCTCACCAAAATGTTGCTTTCGAAATAGTTGACC</canonical>
            <polymorphic>AGGCGAAGAATAATATAACTAAGAGCCAGTACAACCAGGATAGCCACTCCATGGTAAGACACCAGAAAAAAAGATGGAGTTGTGTGTATGTGAATGTGTTATCAGGAACAATACAAGGGTAAATATGTAGAGTGATAATAAGTAATGGGGTCTTAAAGGGTTGATAGCACAATATAACGACTTTTTATGACTTGTTTATGTACAATTATGGAATGACTTGTTCAAAATGTCGTTGGCTACATTTTAGACAAGTGGTTTTCACAAAAAAGTTTGTTGTGGAACATCTCAAGAAGTTACAATCGAATTTTTCAAAATTTGAGAAAATTTGAAAACTTTGCATTCACAGATTTTTATGAAAACTCCTAGTTTTCCAGGTATTTGCCTATTTTTGGCCCATTTTTGTAATGAAAACGTGAAAAAATTGGGTGACTTCAGAAATCGGCTAATAGCTGTAAAATTAGGAGTTGTTCAAAAATTCTGTAAAAGGAAAGTTTTTAACWTAGATCTCATTGATCGTATTATAGAATACTTAGGTCCACAACAAAAGTTTACCACAGTATCTTTATAAGGTTTTTAGTGGAGCAAAATTAAGAGAAATCTAGGTTTGTTCAGAAAGAATTGTATTTGTTTTTTTTTGCTGAAAAAGATAACTCTGAATCTTCAGATTGTTTCTTGAAATATTAAAAAAAAAAACCTAGTTCATCACCTGCAATAAGAAGAAAAATGAAGAAATGTGGGATTGTAGGGAATGGGAACACAAACGATTACATCTTCCATGACATCTACGAACTGCATCGGTTTTATCCGATCGGTTTCATAGTTTCATACGTATTCTATGCAAATATATTTACAAGCCAGAGAGACAAGGACAGAGTGACACCTCTTTTTTCCCTACTTCAATACACAACACTTTTGCTTTCGACAATGAGGGATGACAGAACGACGAACGCTGTCACATCTTCCTCTTCTCACCAAAATGTTGCTTTCGAAATAGTTGACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>363 305 137 99 96</canonical_bands>
                <polymorphic_bands>363 305 236 96</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGTTACAATCGAATTTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>CCACTAAAAACCTTATAAAGATACTG</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>GAAGTTACAATCGAATTTTTCAAAATTTGAGAAAATTTGAAAACTTTGCATTCACAGATTTTTATGAAAACTCCTAGTTTTCCAGGTATTTGCCTATTTTTGGCCCATTTTTGTAATGAAAACGTGAAAAAATTGGGTGACTTCAGAAATCGGCTAATAGCTGTAAAATTAGGAGTTGTTCAAAAATTCTGTAAAAGGAAAGTTTTTAACCTAGATCTCATTGATCGTATTATAGAATACTTAGGTCCACAACAAAAGTTTACCACAGTATCTTTATAAGGTTTTTAGTGG</canonical_amplicon>
		<polymorphic_amplicon>GAAGTTACAATCGAATTTTTCAAAATTTGAGAAAATTTGAAAACTTTGCATTCACAGATTTTTATGAAAACTCCTAGTTTTCCAGGTATTTGCCTATTTTTGGCCCATTTTTGTAATGAAAACGTGAAAAAATTGGGTGACTTCAGAAATCGGCTAATAGCTGTAAAATTAGGAGTTGTTCAAAAATTCTGTAAAAGGAAAGTTTTTAACWTAGATCTCATTGATCGTATTATAGAATACTTAGGTCCACAACAAAAGTTTACCACAGTATCTTTATAAGGTTTTTAGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27570</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>330259</contig_pos>
        <strand>+</strand>
        <context>GTTGTGTCTC[A/G]AAAACGTAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCAGTCAGTTGTTTGAACAGCCAGAAGTGCTCTAAACAAGTTGTGTCTC</left_flank>
        <right_flank>AAAACGTAATCGAAAAAGCAAAAAATCCGAAAAATCGGAAAAGTCCAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGAGCGGAACATGTACGGAATCTAAAAAGTCAGAAATAGAATAAAAATAGACTTGGTTTGATGATTTCATTGTTTGGAACGATATAACGGTTTTTATGGATTTACGGTATCTAAAAACGTCAAGACGTAAACACAAAACGCCAATACGATTCAAATTCTTGACAAAATATAATTGTAGAGAAAAATTTTTATTACGGTTGTGTCTTGAGGCGCTGTTAAATTTCGGCTTATGTCAGCAACTGTAACTCTTCTCTTAATGTGTTGCTGAAACATTTTACAATTACATATTTTGATTGTAGTGGTTCTTCTAAGAAATTGATCATCATTTTTCTCTTTCTGTCAGCTTTTCAGTCTTTCTGTCAGTTGTTCAAAACTTTGAAATATTTGAAAACCATCAGGAGCGGAGCGACAAACCAATGAGAAACTATTGAAGTGCGCCAAAGGAGCACCAGTCAGTTGTTTGAACAGCCAGAAGTGCTCTAAACAAGTTGTGTCTCGAAAACGTAATCGAAAAAGCAAAAAATCCGAAAAATCGGAAAAGTCCAAATCCAATATTTCTATTTCCGTCATAATAGATTATTGTACTTTTTGAAACTTCAAAGTTTGAACAAAATCCACAAATTTAAAAATGTAAAAGTCCTACTTGAGTAACACCCTTCCAGATTTTAGTAGAAAGTAAAAAGTTTCTTTATCGGAGTTTCCAAAATTGCAATTAACACAATATGGTTAACAGTAAAGCAGATACACTCAAAACATTTGAAAACCAAGAAACATCTGAAGTTTTTATTTTAACAAGCCATGAAAAAATCTTGATTTGTTCAAAAATCTTGATTTGTTTTTATCAAAATCACTTTCTGACCTCCTTGCTTTTTTCCTGTAGTATGGCTTCCTGCAAACTAGACATCCTAACATCCACCTACATTCTCATCAAAGCATTTTGCATCTGTCACAAAAAAATTTTTCTGAAAAAAACTTGCAGTGTATGAAATGCTTCAGCC</canonical>
            <polymorphic>TCTGAGCGGAACATGTACGGAATCTAAAAAGTCAGAAATAGAATAAAAATAGACTTGGTTTGATGATTTCATTGTTTGGAACGATATAACGGTTTTTATGGATTTACGGTATCTAAAAACGTCAAGACGTAAACACAAAACGCCAATACGATTCAAATTCTTGACAAAATATAATTGTAGAGAAAAATTTTTATTACGGTTGTGTCTTGAGGCGCTGTTAAATTTCGGCTTATGTCAGCAACTGTAACTCTTCTCTTAATGTGTTGCTGAAACATTTTACAATTACATATTTTGATTGTAGTGGTTCTTCTAAGAAATTGATCATCATTTTTCTCTTTCTGTCAGCTTTTCAGTCTTTCTGTCAGTTGTTCAAAACTTTGAAATATTTGAAAACCATCAGGAGCGGAGCGACAAACCAATGAGAAACTATTGAAGTGCGCCAAAGGAGCACCAGTCAGTTGTTTGAACAGCCAGAAGTGCTCTAAACAAGTTGTGTCTCRAAAACGTAATCGAAAAAGCAAAAAATCCGAAAAATCGGAAAAGTCCAAATCCAATATTTCTATTTCCGTCATAATAGATTATTGTACTTTTTGAAACTTCAAAGTTTGAACAAAATCCACAAATTTAAAAATGTAAAAGTCCTACTTGAGTAACACCCTTCCAGATTTTAGTAGAAAGTAAAAAGTTTCTTTATCGGAGTTTCCAAAATTGCAATTAACACAATATGGTTAACAGTAAAGCAGATACACTCAAAACATTTGAAAACCAAGAAACATCTGAAGTTTTTATTTTAACAAGCCATGAAAAAATCTTGATTTGTTCAAAAATCTTGATTTGTTTTTATCAAAATCACTTTCTGACCTCCTTGCTTTTTTCCTGTAGTATGGCTTCCTGCAAACTAGACATCCTAACATCCACCTACATTCTCATCAAAGCATTTTGCATCTGTCACAAAAAAATTTTTCTGAAAAAAACTTGCAGTGTATGAAATGCTTCAGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 489 12</canonical_bands>
                <polymorphic_bands>511 489</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>192 171 164 150 123 99 46 37 18</canonical_bands>
                <polymorphic_bands>263 192 171 150 123 46 37 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAACCAATGAGAAACTATTGA</pcr_primer_p1>
		<pcr_primer_p2>GGGTGTTACTCAAGTAGGACTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACAAACCAATGAGAAACTATTGAAGTGCGCCAAAGGAGCACCAGTCAGTTGTTTGAACAGCCAGAAGTGCTCTAAACAAGTTGTGTCTCGAAAACGTAATCGAAAAAGCAAAAAATCCGAAAAATCGGAAAAGTCCAAATCCAATATTTCTATTTCCGTCATAATAGATTATTGTACTTTTTGAAACTTCAAAGTTTGAACAAAATCCACAAATTTAAAAATGTAAAAGTCCTACTTGAGTAACACCC</canonical_amplicon>
		<polymorphic_amplicon>ACAAACCAATGAGAAACTATTGAAGTGCGCCAAAGGAGCACCAGTCAGTTGTTTGAACAGCCAGAAGTGCTCTAAACAAGTTGTGTCTCRAAAACGTAATCGAAAAAGCAAAAAATCCGAAAAATCGGAAAAGTCCAAATCCAATATTTCTATTTCCGTCATAATAGATTATTGTACTTTTTGAAACTTCAAAGTTTGAACAAAATCCACAAATTTAAAAATGTAAAAGTCCTACTTGAGTAACACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27582</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>350275</contig_pos>
        <strand>+</strand>
        <context>TTCTTCTCGC[C/T]TCACATCATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCCCCTCTTACAACTACAAAAACTTGATGATGCGCACTTCTTCTCGC</left_flank>
        <right_flank>TCACATCATGGAAAACGACAAGAAGTAGTTTTCACACAATCAAAACTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCGAGTAGCATATGTATTTTTGGAATTTGTACATCAGTGACGTAACTGTTCCCAAAATAATTATGAATTGTCTTGATGAAAAAGATCTCTAGGGAGTTAGCCTTGTTGACTGGGACGCGGACACGATTACAGATTACAAATTCGAGTGTCCAAAACCGAAACAACAATTTCATCCAATCCCTGTGTTGTCCCATTCCTATTCTTATTTCGAGAGAAAAGCATTTATTCTGGTTTGAATGAAAGAATGAATGAGAAAAAGGAATCAAATGGGAATGATATACTAGGAGGCCTAAATATTATTTGTTGTCCCCCTCCTTGAACATCTTCCCTTTTTCTTACCTCATTTTTTTCGTCTTGTGAGTTAGGTTCCTCCTTTTTCGGCATTTTTCTTTTCGCTGTGAAAAAATGAAGGAAGAAATAAGGAGACGCTTCTTTTCGGCTCTACATTTTTCCCCTCTTACAACTACAAAAACTTGATGATGCGCACTTCTTCTCGCTTCACATCATGGAAAACGACAAGAAGTAGTTTTCACACAATCAAAACTCAAGTCCAGTTTTGAAGAATTTTAGGACTTCCGAGTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATAGCTCATACCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATTATATTCCAAACACAAATGAGGATTTTGTTTCAAGTCTAAAATTTTTTATCAGAACATTTCCAAGTTTTTTTTTCTTAAAAACAGAGTTTTAGGAATACAAAACTAGAAACGAATGTTTTCTTTAGGGTCTCAAGCAGATTTACTTTTATTTTCATTGCTTTTTTGGAATA</canonical>
            <polymorphic>ATGCGAGTAGCATATGTATTTTTGGAATTTGTACATCAGTGACGTAACTGTTCCCAAAATAATTATGAATTGTCTTGATGAAAAAGATCTCTAGGGAGTTAGCCTTGTTGACTGGGACGCGGACACGATTACAGATTACAAATTCGAGTGTCCAAAACCGAAACAACAATTTCATCCAATCCCTGTGTTGTCCCATTCCTATTCTTATTTCGAGAGAAAAGCATTTATTCTGGTTTGAATGAAAGAATGAATGAGAAAAAGGAATCAAATGGGAATGATATACTAGGAGGCCTAAATATTATTTGTTGTCCCCCTCCTTGAACATCTTCCCTTTTTCTTACCTCATTTTTTTCGTCTTGTGAGTTAGGTTCCTCCTTTTTCGGCATTTTTCTTTTCGCTGTGAAAAAATGAAGGAAGAAATAAGGAGACGCTTCTTTTCGGCTCTACATTTTTCCCCTCTTACAACTACAAAAACTTGATGATGCGCACTTCTTCTCGCYTCACATCATGGAAAACGACAAGAAGTAGTTTTCACACAATCAAAACTCAAGTCCAGTTTTGAAGAATTTTAGGACTTCCGAGTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATAGCTCATACCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATTATATTCCAAACACAAATGAGGATTTTGTTTCAAGTCTAAAATTTTTTATCAGAACATTTCCAAGTTTTTTTTTCTTAAAAACAGAGTTTTAGGAATACAAAACTAGAAACGAATGTTTTCTTTAGGGTCTCAAGCAGATTTACTTTTATTTTCATTGCTTTTTTGGAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATTTTTCCCCTCTTACAACTA</pcr_primer_p1>
		<pcr_primer_p2>TTGATTAACAATCACATGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATTTTTCCCCTCTTACAACTACAAAAACTTGATGATGCGCACTTCTTCTCGCTTCACATCATGGAAAACGACAAGAAGTAGTTTTCACACAATCAAAACTCAAGTCCAGTTTTGAAGAATTTTAGGACTTCCGAGTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAA</canonical_amplicon>
		<polymorphic_amplicon>ACATTTTTCCCCTCTTACAACTACAAAAACTTGATGATGCGCACTTCTTCTCGCYTCACATCATGGAAAACGACAAGAAGTAGTTTTCACACAATCAAAACTCAAGTCCAGTTTTGAAGAATTTTAGGACTTCCGAGTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27583</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>350290</contig_pos>
        <strand>+</strand>
        <context>ATCATGGAAA[A/T]CGACAAGAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTACAAAAACTTGATGATGCGCACTTCTTCTCGCTTCACATCATGGAAA</left_flank>
        <right_flank>CGACAAGAAGTAGTTTTCACACAATCAAAACTCAAGTCCAGTTTTGAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATTTTTGGAATTTGTACATCAGTGACGTAACTGTTCCCAAAATAATTATGAATTGTCTTGATGAAAAAGATCTCTAGGGAGTTAGCCTTGTTGACTGGGACGCGGACACGATTACAGATTACAAATTCGAGTGTCCAAAACCGAAACAACAATTTCATCCAATCCCTGTGTTGTCCCATTCCTATTCTTATTTCGAGAGAAAAGCATTTATTCTGGTTTGAATGAAAGAATGAATGAGAAAAAGGAATCAAATGGGAATGATATACTAGGAGGCCTAAATATTATTTGTTGTCCCCCTCCTTGAACATCTTCCCTTTTTCTTACCTCATTTTTTTCGTCTTGTGAGTTAGGTTCCTCCTTTTTCGGCATTTTTCTTTTCGCTGTGAAAAAATGAAGGAAGAAATAAGGAGACGCTTCTTTTCGGCTCTACATTTTTCCCCTCTTACAACTACAAAAACTTGATGATGCGCACTTCTTCTCGCTTCACATCATGGAAAACGACAAGAAGTAGTTTTCACACAATCAAAACTCAAGTCCAGTTTTGAAGAATTTTAGGACTTCCGAGTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATAGCTCATACCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATTATATTCCAAACACAAATGAGGATTTTGTTTCAAGTCTAAAATTTTTTATCAGAACATTTCCAAGTTTTTTTTTCTTAAAAACAGAGTTTTAGGAATACAAAACTAGAAACGAATGTTTTCTTTAGGGTCTCAAGCAGATTTACTTTTATTTTCATTGCTTTTTTGGAATATTTCTGTCGAGTTTC</canonical>
            <polymorphic>GTATTTTTGGAATTTGTACATCAGTGACGTAACTGTTCCCAAAATAATTATGAATTGTCTTGATGAAAAAGATCTCTAGGGAGTTAGCCTTGTTGACTGGGACGCGGACACGATTACAGATTACAAATTCGAGTGTCCAAAACCGAAACAACAATTTCATCCAATCCCTGTGTTGTCCCATTCCTATTCTTATTTCGAGAGAAAAGCATTTATTCTGGTTTGAATGAAAGAATGAATGAGAAAAAGGAATCAAATGGGAATGATATACTAGGAGGCCTAAATATTATTTGTTGTCCCCCTCCTTGAACATCTTCCCTTTTTCTTACCTCATTTTTTTCGTCTTGTGAGTTAGGTTCCTCCTTTTTCGGCATTTTTCTTTTCGCTGTGAAAAAATGAAGGAAGAAATAAGGAGACGCTTCTTTTCGGCTCTACATTTTTCCCCTCTTACAACTACAAAAACTTGATGATGCGCACTTCTTCTCGCTTCACATCATGGAAAWCGACAAGAAGTAGTTTTCACACAATCAAAACTCAAGTCCAGTTTTGAAGAATTTTAGGACTTCCGAGTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATAGCTCATACCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATTATATTCCAAACACAAATGAGGATTTTGTTTCAAGTCTAAAATTTTTTATCAGAACATTTCCAAGTTTTTTTTTCTTAAAAACAGAGTTTTAGGAATACAAAACTAGAAACGAATGTTTTCTTTAGGGTCTCAAGCAGATTTACTTTTATTTTCATTGCTTTTTTGGAATATTTCTGTCGAGTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATTTTTCCCCTCTTACAACTA</pcr_primer_p1>
		<pcr_primer_p2>TTGATTAACAATCACATGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATTTTTCCCCTCTTACAACTACAAAAACTTGATGATGCGCACTTCTTCTCGCTTCACATCATGGAAAACGACAAGAAGTAGTTTTCACACAATCAAAACTCAAGTCCAGTTTTGAAGAATTTTAGGACTTCCGAGTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAA</canonical_amplicon>
		<polymorphic_amplicon>ACATTTTTCCCCTCTTACAACTACAAAAACTTGATGATGCGCACTTCTTCTCGCTTCACATCATGGAAAWCGACAAGAAGTAGTTTTCACACAATCAAAACTCAAGTCCAGTTTTGAAGAATTTTAGGACTTCCGAGTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27584</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>350515</contig_pos>
        <strand>+</strand>
        <context>TATGTCTCRC[A/T]TTTTTTTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCAC</left_flank>
        <right_flank>TTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATAGCTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAGAATGAATGAGAAAAAGGAATCAAATGGGAATGATATACTAGGAGGCCTAAATATTATTTGTTGTCCCCCTCCTTGAACATCTTCCCTTTTTCTTACCTCATTTTTTTCGTCTTGTGAGTTAGGTTCCTCCTTTTTCGGCATTTTTCTTTTCGCTGTGAAAAAATGAAGGAAGAAATAAGGAGACGCTTCTTTTCGGCTCTACATTTTTCCCCTCTTACAACTACAAAAACTTGATGATGCGCACTTCTTCTCGCTTCACATCATGGAAAACGACAAGAAGTAGTTTTCACACAATCAAAACTCAAGTCCAGTTTTGAAGAATTTTAGGACTTCCGAGTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATAGCTCATACCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATTATATTCCAAACACAAATGAGGATTTTGTTTCAAGTCTAAAATTTTTTATCAGAACATTTCCAAGTTTTTTTTTCTTAAAAACAGAGTTTTAGGAATACAAAACTAGAAACGAATGTTTTCTTTAGGGTCTCAAGCAGATTTACTTTTATTTTCATTGCTTTTTTGGAATATTTCTGTCGAGTTTCGCAAGTTTTGTTAAAGCTTTTGTGATGGGAAAATGGAATTTCTATATTCGAAAGTTTCTAAATTGGACAATTTCGAGTTTCCAAAATTTTGAAAATCGGAGTATCCCAAGATTCCGAAATTCCAAAATTTTCGAAATCGGATAATTCCAAACTTCCGAAATTTTGAATATCAGCATTTTCGACATTCCGAAAATTTTCGAAAAAGACATTACCGAATCTTAGTCG</canonical>
            <polymorphic>GAAAGAATGAATGAGAAAAAGGAATCAAATGGGAATGATATACTAGGAGGCCTAAATATTATTTGTTGTCCCCCTCCTTGAACATCTTCCCTTTTTCTTACCTCATTTTTTTCGTCTTGTGAGTTAGGTTCCTCCTTTTTCGGCATTTTTCTTTTCGCTGTGAAAAAATGAAGGAAGAAATAAGGAGACGCTTCTTTTCGGCTCTACATTTTTCCCCTCTTACAACTACAAAAACTTGATGATGCGCACTTCTTCTCGCTTCACATCATGGAAAACGACAAGAAGTAGTTTTCACACAATCAAAACTCAAGTCCAGTTTTGAAGAATTTTAGGACTTCCGAGTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCACWTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATAGCTCATACCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATTATATTCCAAACACAAATGAGGATTTTGTTTCAAGTCTAAAATTTTTTATCAGAACATTTCCAAGTTTTTTTTTCTTAAAAACAGAGTTTTAGGAATACAAAACTAGAAACGAATGTTTTCTTTAGGGTCTCAAGCAGATTTACTTTTATTTTCATTGCTTTTTTGGAATATTTCTGTCGAGTTTCGCAAGTTTTGTTAAAGCTTTTGTGATGGGAAAATGGAATTTCTATATTCGAAAGTTTCTAAATTGGACAATTTCGAGTTTCCAAAATTTTGAAAATCGGAGTATCCCAAGATTCCGAAATTCCAAAATTTTCGAAATCGGATAATTCCAAACTTCCGAAATTTTGAATATCAGCATTTTCGACATTCCGAAAATTTTCGAAAAAGACATTACCGAATCTTAGTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATATTTTCCCATTTTGTTGTC</pcr_primer_p1>
		<pcr_primer_p2>AATATTGGATTTTTCGATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATAGCTCATACCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATT</canonical_amplicon>
		<polymorphic_amplicon>GTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCACWTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATAGCTCATACCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27585</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>350560</contig_pos>
        <strand></strand>
        <context>ACKGGGGAAT[A/T]GCTCATRCCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAAT</left_flank>
        <right_flank>GCTCATACCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATTATATT</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGGCCTAAATATTATTTGTTGTCCCCCTCCTTGAACATCTTCCCTTTTTCTTACCTCATTTTTTTCGTCTTGTGAGTTAGGTTCCTCCTTTTTCGGCATTTTTCTTTTCGCTGTGAAAAAATGAAGGAAGAAATAAGGAGACGCTTCTTTTCGGCTCTACATTTTTCCCCTCTTACAACTACAAAAACTTGATGATGCGCACTTCTTCTCGCTTCACATCATGGAAAACGACAAGAAGTAGTTTTCACACAATCAAAACTCAAGTCCAGTTTTGAAGAATTTTAGGACTTCCGAGTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATAGCTCATACCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATTATATTCCAAACACAAATGAGGATTTTGTTTCAAGTCTAAAATTTTTTATCAGAACATTTCCAAGTTTTTTTTTCTTAAAAACAGAGTTTTAGGAATACAAAACTAGAAACGAATGTTTTCTTTAGGGTCTCAAGCAGATTTACTTTTATTTTCATTGCTTTTTTGGAATATTTCTGTCGAGTTTCGCAAGTTTTGTTAAAGCTTTTGTGATGGGAAAATGGAATTTCTATATTCGAAAGTTTCTAAATTGGACAATTTCGAGTTTCCAAAATTTTGAAAATCGGAGTATCCCAAGATTCCGAAATTCCAAAATTTTCGAAATCGGATAATTCCAAACTTCCGAAATTTTGAATATCAGCATTTTCGACATTCCGAAAATTTTCGAAAAAGACATTACCGAATCTTAGTCGTTTCACGTCACATCAATATTGCTGATTTTATCTACAGTAACATTT</canonical>
            <polymorphic>GGAGGCCTAAATATTATTTGTTGTCCCCCTCCTTGAACATCTTCCCTTTTTCTTACCTCATTTTTTTCGTCTTGTGAGTTAGGTTCCTCCTTTTTCGGCATTTTTCTTTTCGCTGTGAAAAAATGAAGGAAGAAATAAGGAGACGCTTCTTTTCGGCTCTACATTTTTCCCCTCTTACAACTACAAAAACTTGATGATGCGCACTTCTTCTCGCTTCACATCATGGAAAACGACAAGAAGTAGTTTTCACACAATCAAAACTCAAGTCCAGTTTTGAAGAATTTTAGGACTTCCGAGTATATTTTCCCATTTTGTTGTCCCTGGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATWGCTCATACCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATTATATTCCAAACACAAATGAGGATTTTGTTTCAAGTCTAAAATTTTTTATCAGAACATTTCCAAGTTTTTTTTTCTTAAAAACAGAGTTTTAGGAATACAAAACTAGAAACGAATGTTTTCTTTAGGGTCTCAAGCAGATTTACTTTTATTTTCATTGCTTTTTTGGAATATTTCTGTCGAGTTTCGCAAGTTTTGTTAAAGCTTTTGTGATGGGAAAATGGAATTTCTATATTCGAAAGTTTCTAAATTGGACAATTTCGAGTTTCCAAAATTTTGAAAATCGGAGTATCCCAAGATTCCGAAATTCCAAAATTTTCGAAATCGGATAATTCCAAACTTCCGAAATTTTGAATATCAGCATTTTCGACATTCCGAAAATTTTCGAAAAAGACATTACCGAATCTTAGTCGTTTCACGTCACATCAATATTGCTGATTTTATCTACAGTAACATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>501 254 245</canonical_bands>
                <polymorphic_bands>746 254</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>345 254 245 151 5</canonical_bands>
                <polymorphic_bands>590 254 151 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGTGATAATTAGTGAGCATGT</pcr_primer_p1>
		<pcr_primer_p2>CCTCATTTGTGTTTGGAATATAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATAGCTCATACCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATTATATTCCAAACACAAATGAGG</canonical_amplicon>
		<polymorphic_amplicon>GGTGTGATAATTAGTGAGCATGTCACTTTTTTGAAATTTTCTGTGCTTGTAAATAAGAATACGAATTTTTCATGTGATTGTTAATCAATCAACAGAATTCTGAAAATTTCCAGATGATTTATTATGTCTCACTTTTTTTTTTAATTTGGAGTGTCTGAAATGATTGAACGGGGGAATWGCTCATACCCTTTCTCCATAGGGAAAAATCGAAAAATCCAATATTATATTCCAAACACAAATGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27597</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>380423</contig_pos>
        <strand>+</strand>
        <context>TCTTCTCAAT[G/T]TCTCTCTAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACAATTTCACTTAACAATATCAAAAAACTCAACAAAAATATCTTCTCAAT</left_flank>
        <right_flank>TCTCTCTAATAGAGTAATCAGATGTTGGAACTCTTTACCCGCCAAAGTGT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAATGGGGCGAAAAGAAAGACACTTGATTCGTCTTTTTTTTTTGTTCTGAATTTGAAACCACATGGAATTTTGCTTGGATTTTTTAATGAGAGGAAGACAAAATGAGGGAATTCTGAAGTTCCAAAATTGTTACCAGGTTTTGCCTCTAATATTCAAAATGTATACAGAAAAGCCTGTGATAAAAGAGCCCCCTACTTTTTATCGCGATATCTATCAAAGATGCAAAGAAAGCCGTCAACTGAGAAACTGTTTATCATAATATCAAAAACATTTTATCAGTTGACATATTTGTATTATCTTGGATTGGGCCCGAGAAAAATTAGCTCAGACTTGACAGTGTTGAGCTCTTCTATCAAAGCTTTTACGGTATTCTTTGTTTTTAAATTGGAATCGGTTGTTTTAAACTTGTCAAAATGATTCAAAAATTGAAAAGCAATCATTAGCAAACAATTTCACTTAACAATATCAAAAAACTCAACAAAAATATCTTCTCAATTTCTCTCTAATAGAGTAATCAGATGTTGGAACTCTTTACCCGCCAAAGTGTTTCCGGTGAAGCCCTCGTCAGCGGCTTTCAAAAATCGACTATTATCCTGTGATCTAAAACATTTTCTTGTCTTGAATTCAACTAATTACTAACTCGGTTTTTCCTCCATCTCCCATTTAATACAAATGTATGTCCCCTGTTATATCCCCTAGTTTCATAGACATTTCACGTGTTAGTGGTTTTCTCCCCTTCGTTGAAATAAATAAACAAATAAATAAATAAATAAACAAGCAAACCTCAACATTTCAAGAATAAATTATTTAGACAGTTCTGAAAACTTTAGAATAACAAAAGTGCAAAGACAGCAACTTCCAAATGCGATTTTTACAATTTTTAGGACGTTTTAGAGAACATGAAATTTACTTAATTCCTTAAAATTTTCTATTTTAGACATTTTTAATGAACTTTTCTCTCAAACTTTTCGAATGAATCCAAGTTATGGGTAAATTC</canonical>
            <polymorphic>GAAAATGGGGCGAAAAGAAAGACACTTGATTCGTCTTTTTTTTTTGTTCTGAATTTGAAACCACATGGAATTTTGCTTGGATTTTTTAATGAGAGGAAGACAAAATGAGGGAATTCTGAAGTTCCAAAATTGTTACCAGGTTTTGCCTCTAATATTCAAAATGTATACAGAAAAGCCTGTGATAAAAGAGCCCCCTACTTTTTATCGCGATATCTATCAAAGATGCAAAGAAAGCCGTCAACTGAGAAACTGTTTATCATAATATCAAAAACATTTTATCAGTTGACATATTTGTATTATCTTGGATTGGGCCCGAGAAAAATTAGCTCAGACTTGACAGTGTTGAGCTCTTCTATCAAAGCTTTTACGGTATTCTTTGTTTTTAAATTGGAATCGGTTGTTTTAAACTTGTCAAAATGATTCAAAAATTGAAAAGCAATCATTAGCAAACAATTTCACTTAACAATATCAAAAAACTCAACAAAAATATCTTCTCAATKTCTCTCTAATAGAGTAATCAGATGTTGGAACTCTTTACCCGCCAAAGTGTTTCCGGTGAAGCCCTCGTCAGCGGCTTTCAAAAATCGACTATTATCCTGTGATCTAAAACATTTTCTTGTCTTGAATTCAACTAATTACTAACTCGGTTTTTCCTCCATCTCCCATTTAATACAAATGTATGTCCCCTGTTATATCCCCTAGTTTCATAGACATTTCACGTGTTAGTGGTTTTCTCCCCTTCGTTGAAATAAATAAACAAATAAATAAATAAATAAACAAGCAAACCTCAACATTTCAAGAATAAATTATTTAGACAGTTCTGAAAACTTTAGAATAACAAAAGTGCAAAGACAGCAACTTCCAAATGCGATTTTTACAATTTTTAGGACGTTTTAGAGAACATGAAATTTACTTAATTCCTTAAAATTTTCTATTTTAGACATTTTTAATGAACTTTTCTCTCAAACTTTTCGAATGAATCCAAGTTATGGGTAAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>193 171 128 74 70 65 51 45 43 41 28 25 17 16 10 9 9 5</canonical_bands>
                <polymorphic_bands>193 173 171 74 70 65 51 43 41 28 25 17 16 10 9 9 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCATTAGCAAACAATTTCACTT</pcr_primer_p1>
		<pcr_primer_p2>AGGGGACATACATTTGTATTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCATTAGCAAACAATTTCACTTAACAATATCAAAAAACTCAACAAAAATATCTTCTCAATTTCTCTCTAATAGAGTAATCAGATGTTGGAACTCTTTACCCGCCAAAGTGTTTCCGGTGAAGCCCTCGTCAGCGGCTTTCAAAAATCGACTATTATCCTGTGATCTAAAACATTTTCTTGTCTTGAATTCAACTAATTACTAACTCGGTTTTTCCTCCATCTCCCATTTAATACAAATGTATGTCCCCT</canonical_amplicon>
		<polymorphic_amplicon>ATCATTAGCAAACAATTTCACTTAACAATATCAAAAAACTCAACAAAAATATCTTCTCAATKTCTCTCTAATAGAGTAATCAGATGTTGGAACTCTTTACCCGCCAAAGTGTTTCCGGTGAAGCCCTCGTCAGCGGCTTTCAAAAATCGACTATTATCCTGTGATCTAAAACATTTTCTTGTCTTGAATTCAACTAATTACTAACTCGGTTTTTCCTCCATCTCCCATTTAATACAAATGTATGTCCCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27611</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>457425</contig_pos>
        <strand>+</strand>
        <context>GAGGTTTGCA[A/G]AGAATTAGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGGAAGTGTAAAAACCATCAATGAAGCACTTGTCATCAGAGGTTTGCA</left_flank>
        <right_flank>AGAATTAGTGCAAATGACACCAATTACGTAATAATAATAATGTATTTTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTTCCAATTCTAGGTCTTCTCAAAATTCGTAAGGTTTCAATAGTATAGTTCTCAAAATTAATCCCGTTGAAAATTCAAAATATCAAGATGACAATGAATATTCAATGCTGGTAAGTGAGTCCCTCTTTTTTATTATTTCCTTGTTTTGTTTTATCCCAGTTAGTTTCTACTTAAAAAGAAGTGGTTTGTCCATTAGTCTAGACGATTGTTTGAAAGTCACTCATTTCTTAAAATGACTTCAAAAAAAAAGGGAAACTCAAAAATCATCACTTTTTTGCTTTATTTTGCTTTGGGAGGGGAGAAAAAGTAATTTCACGTTTGAATGCTTAAAAGCATTTCTCCCCCTTTTTTCGCCATGTTCTTTTCTTCAAAGAGATTAAATTCTTATTATTTCCCCTTCTAGACTCTTTTACGTCTTCATTTTGTAAAAGAGGCGTTGAATAGATGGAAGGAAGTGTAAAAACCATCAATGAAGCACTTGTCATCAGAGGTTTGCAGAGAATTAGTGCAAATGACACCAATTACGTAATAATAATAATGTATTTTATTCCAATTGCGCCAAATGGAAATTTCTGGAGACGTCGACACCCACACTGGTAGACTCATCATGCTTGGGTCACATGAAGTACTTAGTAATTCATATATCCTTCAACTCTATATCTATATTTAATCCCAGAATTGTCAATTCCTTCTTCTTCGTATTCCTGGGGTTTTTATATCCTTGTGAGGGTGGGGATAAATAAGAAAAGCGTAGTGCTAAACATAGAGATTGAAGATGAGTCGTCCTTTATATTTCTGTTTTTTTTCTTTTTTGAATTGAATTAGATTTAGAATTTTCCTTGAAATATTTATTTTAATTTGAGTAACAAACACATGTTCAAGAAATGAGATAACTAATTATTAGTGAGAAAAATTAGATTCAAGGGAGACAAATTTTTACTGAATTTAATTATTTTTCTGATTTTTTGATCGCATCAAAACAATAAAATACAGCTCCA</canonical>
            <polymorphic>GTGTTCCAATTCTAGGTCTTCTCAAAATTCGTAAGGTTTCAATAGTATAGTTCTCAAAATTAATCCCGTTGAAAATTCAAAATATCAAGATGACAATGAATATTCAATGCTGGTAAGTGAGTCCCTCTTTTTTATTATTTCCTTGTTTTGTTTTATCCCAGTTAGTTTCTACTTAAAAAGAAGTGGTTTGTCCATTAGTCTAGACGATTGTTTGAAAGTCACTCATTTCTTAAAATGACTTCAAAAAAAAAGGGAAACTCAAAAATCATCACTTTTTTGCTTTATTTTGCTTTGGGAGGGGAGAAAAAGTAATTTCACGTTTGAATGCTTAAAAGCATTTCTCCCCCTTTTTTCGCCATGTTCTTTTCTTCAAAGAGATTAAATTCTTATTATTTCCCCTTCTAGACTCTTTTACGTCTTCATTTTGTAAAAGAGGCGTTGAATAGATGGAAGGAAGTGTAAAAACCATCAATGAAGCACTTGTCATCAGAGGTTTGCARAGAATTAGTGCAAATGACACCAATTACGTAATAATAATAATGTATTTTATTCCAATTGCGCCAAATGGAAATTTCTGGAGACGTCGACACCCACACTGGTAGACTCATCATGCTTGGGTCACATGAAGTACTTAGTAATTCATATATCCTTCAACTCTATATCTATATTTAATCCCAGAATTGTCAATTCCTTCTTCTTCGTATTCCTGGGGTTTTTATATCCTTGTGAGGGTGGGGATAAATAAGAAAAGCGTAGTGCTAAACATAGAGATTGAAGATGAGTCGTCCTTTATATTTCTGTTTTTTTTCTTTTTTGAATTGAATTAGATTTAGAATTTTCCTTGAAATATTTATTTTAATTTGAGTAACAAACACATGTTCAAGAAATGAGATAACTAATTATTAGTGAGAAAAATTAGATTCAAGGGAGACAAATTTTTACTGAATTTAATTATTTTTCTGATTTTTTGATCGCATCAAAACAATAAAATACAGCTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAATAGATGGAAGGAAGTGTA</pcr_primer_p1>
		<pcr_primer_p2>ATTGACAATTCTGGGATTAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGAATAGATGGAAGGAAGTGTAAAAACCATCAATGAAGCACTTGTCATCAGAGGTTTGCAGAGAATTAGTGCAAATGACACCAATTACGTAATAATAATAATGTATTTTATTCCAATTGCGCCAAATGGAAATTTCTGGAGACGTCGACACCCACACTGGTAGACTCATCATGCTTGGGTCACATGAAGTACTTAGTAATTCATATATCCTTCAACTCTATATCTATATTTAATCCCAGAATTGTCAAT</canonical_amplicon>
		<polymorphic_amplicon>TTGAATAGATGGAAGGAAGTGTAAAAACCATCAATGAAGCACTTGTCATCAGAGGTTTGCARAGAATTAGTGCAAATGACACCAATTACGTAATAATAATAATGTATTTTATTCCAATTGCGCCAAATGGAAATTTCTGGAGACGTCGACACCCACACTGGTAGACTCATCATGCTTGGGTCACATGAAGTACTTAGTAATTCATATATCCTTCAACTCTATATCTATATTTAATCCCAGAATTGTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27612</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>463462</contig_pos>
        <strand>+</strand>
        <context>aatattataa[C/T]TTGAAAATTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGCGAAAAATGAGGTATGTAAATAATTATTGAATTTTTTAATATTATAA</left_flank>
        <right_flank>TTGAAAATTGTTAGCTGAGAAAATTAATTTTGAGTATGAAAAAGTGGTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATCCAGAACATTATTCCTTTTCTCCATCTTTCTCAATTTTTAATGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCTTTTCGTGATTAAAATTTATTAGGAATCGAACTTGATTTTCTTCACTCATAAAGGTTTTTCTTCAGGTAGAGATGTCCGCCGAAAAAGCCAGAATCGCCGAAAATGCCAAGTGCGCTGAAAATGCTACGGTCGACAATCAAACGCCACGCAAACACCAATATCCCCGTACCCGCCATGTGAGCGGAAAAAAAAATGTTTACCTATCGCAACGGAGAATTGCTATCGGTGAAGAAAGCGACTGTTCCAACGCCATTCAAGAAATCCCAAAAAAAGGAGCACGTCGAGGCTAGAAAAGTGGCTGCAGCCATGAATGCGTCAAAGAAGAAGGGATGTCGTGACTTATACCAGGAAATGTATGATGCGAAAAATGAGGTATGTAAATAATTATTGAATTTTTTAATATTATAACTTGAAAATTGTTAGCTGAGAAAATTAATTTTGAGTATGAAAAAGTGGTTTGGAATCCTGTGCATTTGCTTGAAATAGGTTAACAACTATGACGCTTAATTTTTGTATTTGAAAACTATTTTCTCCGCGCAACGTTGCAAAATGTTTGAAATTGACACAAACATAACGTGACGTTTAGATTTTTTTCGCTTTACAAGACTCACAACCTGGACTTCGGTCATCGCTCATATTAAATTTTTGCCAAATGAAAAAATAATTGCGTTGGACGGTTGTTTCTCCAATCTAGCAAAATTTCAAAATTTCAAACCACTTTGTATACCCAAAACTTAACAATTTCTCACTGAAATTTTTCAAACTGTACATTTTACTAAACGGTGTTATATATGTATTTGGAATATGAGGAATTAATAATATTTTCTAATTTTCAGTAAATCATCCAACGACTGATCTTCTTCCCTTCTTCACCACACCTGTGCCATATCTGGATAATTCTCAATATTT</canonical>
            <polymorphic>TTATCCAGAACATTATTCCTTTTCTCCATCTTTCTCAATTTTTAATGTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCTTTTCGTGATTAAAATTTATTAGGAATCGAACTTGATTTTCTTCACTCATAAAGGTTTTTCTTCAGGTAGAGATGTCCGCCGAAAAAGCCAGAATCGCCGAAAATGCCAAGTGCGCTGAAAATGCTACGGTCGACAATCAAACGCCACGCAAACACCAATATCCCCGTACCCGCCATGTGAGCGGAAAAAAAAATGTTTACCTATCGCAACGGAGAATTGCTATCGGTGAAGAAAGCGACTGTTCCAACGCCATTCAAGAAATCCCAAAAAAAGGAGCACGTCGAGGCTAGAAAAGTGGCTGCAGCCATGAATGCGTCAAAGAAGAAGGGATGTCGTGACTTATACCAGGAAATGTATGATGCGAAAAATGAGGTATGTAAATAATTATTGAATTTTTTAATATTATAAYTTGAAAATTGTTAGCTGAGAAAATTAATTTTGAGTATGAAAAAGTGGTTTGGAATCCTGTGCATTTGCTTGAAATAGGTTAACAACTATGACGCTTAATTTTTGTATTTGAAAACTATTTTCTCCGCGCAACGTTGCAAAATGTTTGAAATTGACACAAACATAACGTGACGTTTAGATTTTTTTCGCTTTACAAGACTCACAACCTGGACTTCGGTCATCGCTCATATTAAATTTTTGCCAAATGAAAAAATAATTGCGTTGGACGGTTGTTTCTCCAATCTAGCAAAATTTCAAAATTTCAAACCACTTTGTATACCCAAAACTTAACAATTTCTCACTGAAATTTTTCAAACTGTACATTTTACTAAACGGTGTTATATATGTATTTGGAATATGAGGAATTAATAATATTTTCTAATTTTCAGTAAATCATCCAACGACTGATCTTCTTCCCTTCTTCACCACACCTGTGCCATATCTGGATAATTCTCAATATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTGACTTATACCAGGAAATGTA</pcr_primer_p1>
		<pcr_primer_p2>GTCACGTTATGTTTGTGTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CGTGACTTATACCAGGAAATGTATGATGCGAAAAATGAGGTATGTAAATAATTATTGAATTTTTTAATATTATAACTTGAAAATTGTTAGCTGAGAAAATTAATTTTGAGTATGAAAAAGTGGTTTGGAATCCTGTGCATTTGCTTGAAATAGGTTAACAACTATGACGCTTAATTTTTGTATTTGAAAACTATTTTCTCCGCGCAACGTTGCAAAATGTTTGAAATTGACACAAACATAACGTGAC</canonical_amplicon>
		<polymorphic_amplicon>CGTGACTTATACCAGGAAATGTATGATGCGAAAAATGAGGTATGTAAATAATTATTGAATTTTTTAATATTATAAYTTGAAAATTGTTAGCTGAGAAAATTAATTTTGAGTATGAAAAAGTGGTTTGGAATCCTGTGCATTTGCTTGAAATAGGTTAACAACTATGACGCTTAATTTTTGTATTTGAAAACTATTTTCTCCGCGCAACGTTGCAAAATGTTTGAAATTGACACAAACATAACGTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27613</snp_id>
        <super_contig>c003201028.Contig1</super_contig>
        <contig_pos>463523</contig_pos>
        <strand>+</strand>
        <context>GGAATCCTGT[A/G]CATTTGCTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAGCTGAGAAAATTAATTTTGAGTATGAAAAAGTGGTTTGGAATCCTGT</left_flank>
        <right_flank>CATTTGCTTGAAATAGGTTAACAACTATGACGCTTAATTTTTGTATTTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTCTCTCTCTCTCTCTCTCTCTCACTCTTTTCGTGATTAAAATTTATTAGGAATCGAACTTGATTTTCTTCACTCATAAAGGTTTTTCTTCAGGTAGAGATGTCCGCCGAAAAAGCCAGAATCGCCGAAAATGCCAAGTGCGCTGAAAATGCTACGGTCGACAATCAAACGCCACGCAAACACCAATATCCCCGTACCCGCCATGTGAGCGGAAAAAAAAATGTTTACCTATCGCAACGGAGAATTGCTATCGGTGAAGAAAGCGACTGTTCCAACGCCATTCAAGAAATCCCAAAAAAAGGAGCACGTCGAGGCTAGAAAAGTGGCTGCAGCCATGAATGCGTCAAAGAAGAAGGGATGTCGTGACTTATACCAGGAAATGTATGATGCGAAAAATGAGGTATGTAAATAATTATTGAATTTTTTAATATTATAACTTGAAAATTGTTAGCTGAGAAAATTAATTTTGAGTATGAAAAAGTGGTTTGGAATCCTGTGCATTTGCTTGAAATAGGTTAACAACTATGACGCTTAATTTTTGTATTTGAAAACTATTTTCTCCGCGCAACGTTGCAAAATGTTTGAAATTGACACAAACATAACGTGACGTTTAGATTTTTTTCGCTTTACAAGACTCACAACCTGGACTTCGGTCATCGCTCATATTAAATTTTTGCCAAATGAAAAAATAATTGCGTTGGACGGTTGTTTCTCCAATCTAGCAAAATTTCAAAATTTCAAACCACTTTGTATACCCAAAACTTAACAATTTCTCACTGAAATTTTTCAAACTGTACATTTTACTAAACGGTGTTATATATGTATTTGGAATATGAGGAATTAATAATATTTTCTAATTTTCAGTAAATCATCCAACGACTGATCTTCTTCCCTTCTTCACCACACCTGTGCCATATCTGGATAATTCTCAATATTTTATTTATTGATTTTTGTAATTTTTATATAAATTTATCCGATTCAAACAAACTAAAGTTGAA</canonical>
            <polymorphic>CTCTCTCTCTCTCTCTCTCTCTCTCACTCTTTTCGTGATTAAAATTTATTAGGAATCGAACTTGATTTTCTTCACTCATAAAGGTTTTTCTTCAGGTAGAGATGTCCGCCGAAAAAGCCAGAATCGCCGAAAATGCCAAGTGCGCTGAAAATGCTACGGTCGACAATCAAACGCCACGCAAACACCAATATCCCCGTACCCGCCATGTGAGCGGAAAAAAAAATGTTTACCTATCGCAACGGAGAATTGCTATCGGTGAAGAAAGCGACTGTTCCAACGCCATTCAAGAAATCCCAAAAAAAGGAGCACGTCGAGGCTAGAAAAGTGGCTGCAGCCATGAATGCGTCAAAGAAGAAGGGATGTCGTGACTTATACCAGGAAATGTATGATGCGAAAAATGAGGTATGTAAATAATTATTGAATTTTTTAATATTATAACTTGAAAATTGTTAGCTGAGAAAATTAATTTTGAGTATGAAAAAGTGGTTTGGAATCCTGTRCATTTGCTTGAAATAGGTTAACAACTATGACGCTTAATTTTTGTATTTGAAAACTATTTTCTCCGCGCAACGTTGCAAAATGTTTGAAATTGACACAAACATAACGTGACGTTTAGATTTTTTTCGCTTTACAAGACTCACAACCTGGACTTCGGTCATCGCTCATATTAAATTTTTGCCAAATGAAAAAATAATTGCGTTGGACGGTTGTTTCTCCAATCTAGCAAAATTTCAAAATTTCAAACCACTTTGTATACCCAAAACTTAACAATTTCTCACTGAAATTTTTCAAACTGTACATTTTACTAAACGGTGTTATATATGTATTTGGAATATGAGGAATTAATAATATTTTCTAATTTTCAGTAAATCATCCAACGACTGATCTTCTTCCCTTCTTCACCACACCTGTGCCATATCTGGATAATTCTCAATATTTTATTTATTGATTTTTGTAATTTTTATATAAATTTATCCGATTCAAACAAACTAAAGTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>425 331 169 75</canonical_bands>
                <polymorphic_bands>425 331 244</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>118 107 95 87 87 68 50 49 40 37 37 34 32 31 26 25 19 15 13 11 8 6 3 2</canonical_bands>
                <polymorphic_bands>118 110 107 87 87 68 50 49 40 37 37 34 32 31 26 25 19 13 11 8 6 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAAAATTGTTAGCTGAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TCATTTGGCAAAAATTTAATATG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTGAAAATTGTTAGCTGAGAAAATTAATTTTGAGTATGAAAAAGTGGTTTGGAATCCTGTGCATTTGCTTGAAATAGGTTAACAACTATGACGCTTAATTTTTGTATTTGAAAACTATTTTCTCCGCGCAACGTTGCAAAATGTTTGAAATTGACACAAACATAACGTGACGTTTAGATTTTTTTCGCTTTACAAGACTCACAACCTGGACTTCGGTCATCGCTCATATTAAATTTTTGCCAAATGA</canonical_amplicon>
		<polymorphic_amplicon>TTGAAAATTGTTAGCTGAGAAAATTAATTTTGAGTATGAAAAAGTGGTTTGGAATCCTGTRCATTTGCTTGAAATAGGTTAACAACTATGACGCTTAATTTTTGTATTTGAAAACTATTTTCTCCGCGCAACGTTGCAAAATGTTTGAAATTGACACAAACATAACGTGACGTTTAGATTTTTTTCGCTTTACAAGACTCACAACCTGGACTTCGGTCATCGCTCATATTAAATTTTTGCCAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27614</snp_id>
        <super_contig>c003201051.Contig1</super_contig>
        <contig_pos>23572</contig_pos>
        <strand>+</strand>
        <context>AAAACCGGGG[A/G]AAGAAAACGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATAGGGAGAAAGGGAAAGGAAAGTACATCTTATTTACAGAAAACCGGGG</left_flank>
        <right_flank>AAGAAAACGACTACTTGAAGCTGAATATTATCCGACCACACACAATCACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGAAACGATAATTTTTCTTTCATTTTACACTCTAAACAAAACAAACTGGCGAGAGTAGATGGACACAACAAGGTCATTTCTCAAAATGAAGAGAGGCCAGCCATTGATCGAAGTCTTGATACCCAAGCAGAAGGCATGATGCCACGTCAGTTCCGTCATGAATCATTACGAGGAGACTGAATTACTGGGATGACGTGAGAGGAAAACCGGATACATCCCTGGCTACGGCTATTATCAAAATTGTTGGTTTATTTTGGAAAGTGAAAAAAGGAGGTAACCGTTTTTAAATAAATACTTACAAAGTGTTCAAAACTCGAAGTGCGGGGGAACCGATAGTCGAGTACAATGAGACCAAGGGACATGAAAAGAGATAGAGAGAAAATTAAATTATTATGCCAGGGAGATTTCAGGAGGAGGAGAAGAAAAGAAAATGAGATTCAGTAGGAGTATAGGGAGAAAGGGAAAGGAAAGTACATCTTATTTACAGAAAACCGGGGAAAGAAAACGACTACTTGAAGCTGAATATTATCCGACCACACACAATCACTGCGATGACGCTGGCTCCGATGATGGACCAACTCTTGAGCCGTTTCCCTTCTTCAGCGTCCTTTTCTTTTTCGTAGTCTTCTTTCATTTGTTGTCCGAGCTTCATGAAATCCGCCTGAAACAAAGAAAAATGAATAAATATTCGAAAATTCTCCATCTGTTCACTACTGTTGTTCTTTCCCCTGCTACCTCCCCTACTCTTCACTTTCTCGCCAACCCTGTAATTATCGGATCAGGGACACCTCGAAGTGGTGTCTTCTCCTGCTGAGTCAAGAGCCCTTATTGGGCACCGATATTGACTGCTAATGTTTATGCAAATATCCCTTACCCAGCTACGATTGTGTTCTTTCCACGACTGTCGGATTCTCGTTTTGATGAACAGCGATGTGTACATAAGAAGGTTTCGCACTTGCCCTTGTAGCTCAGCAGACTCCATCATTTTGGCAGCAACC</canonical>
            <polymorphic>GATGAAACGATAATTTTTCTTTCATTTTACACTCTAAACAAAACAAACTGGCGAGAGTAGATGGACACAACAAGGTCATTTCTCAAAATGAAGAGAGGCCAGCCATTGATCGAAGTCTTGATACCCAAGCAGAAGGCATGATGCCACGTCAGTTCCGTCATGAATCATTACGAGGAGACTGAATTACTGGGATGACGTGAGAGGAAAACCGGATACATCCCTGGCTACGGCTATTATCAAAATTGTTGGTTTATTTTGGAAAGTGAAAAAAGGAGGTAACCGTTTTTAAATAAATACTTACAAAGTGTTCAAAACTCGAAGTGCGGGGGAACCGATAGTCGAGTACAATGAGACCAAGGGACATGAAAAGAGATAGAGAGAAAATTAAATTATTATGCCAGGGAGATTTCAGGAGGAGGAGAAGAAAAGAAAATGAGATTCAGTAGGAGTATAGGGAGAAAGGGAAAGGAAAGTACATCTTATTTACAGAAAACCGGGGRAAGAAAACGACTACTTGAAGCTGAATATTATCCGACCACACACAATCACTGCGATGACGCTGGCTCCGATGATGGACCAACTCTTGAGCCGTTTCCCTTCTTCAGCGTCCTTTTCTTTTTCGTAGTCTTCTTTCATTTGTTGTCCGAGCTTCATGAAATCCGCCTGAAACAAAGAAAAATGAATAAATATTCGAAAATTCTCCATCTGTTCACTACTGTTGTTCTTTCCCCTGCTACCTCCCCTACTCTTCACTTTCTCGCCAACCCTGTAATTATCGGATCAGGGACACCTCGAAGTGGTGTCTTCTCCTGCTGAGTCAAGAGCCCTTATTGGGCACCGATATTGACTGCTAATGTTTATGCAAATATCCCTTACCCAGCTACGATTGTGTTCTTTCCACGACTGTCGGATTCTCGTTTTGATGAACAGCGATGTGTACATAAGAAGGTTTCGCACTTGCCCTTGTAGCTCAGCAGACTCCATCATTTTGGCAGCAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATTATTATGCCAGGGAGATT</pcr_primer_p1>
		<pcr_primer_p2>TGAAAGAAGACTACGAAAAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAATTATTATGCCAGGGAGATTTCAGGAGGAGGAGAAGAAAAGAAAATGAGATTCAGTAGGAGTATAGGGAGAAAGGGAAAGGAAAGTACATCTTATTTACAGAAAACCGGGGAAAGAAAACGACTACTTGAAGCTGAATATTATCCGACCACACACAATCACTGCGATGACGCTGGCTCCGATGATGGACCAACTCTTGAGCCGTTTCCCTTCTTCAGCGTCCTTTTCTTTTTCGTAGTCTTCTTTCA</canonical_amplicon>
		<polymorphic_amplicon>TAAATTATTATGCCAGGGAGATTTCAGGAGGAGGAGAAGAAAAGAAAATGAGATTCAGTAGGAGTATAGGGAGAAAGGGAAAGGAAAGTACATCTTATTTACAGAAAACCGGGGRAAGAAAACGACTACTTGAAGCTGAATATTATCCGACCACACACAATCACTGCGATGACGCTGGCTCCGATGATGGACCAACTCTTGAGCCGTTTCCCTTCTTCAGCGTCCTTTTCTTTTTCGTAGTCTTCTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27615</snp_id>
        <super_contig>c003201051.Contig1</super_contig>
        <contig_pos>43667</contig_pos>
        <strand>+</strand>
        <context>AATTTTTTTG[A/G]AAAAAAAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAGAGCTCAGAGCAACAGAAATTAAGATCAAATTAAGATAATTTTTTTG</left_flank>
        <right_flank>AAAAAAAAGATGTTGATATTTCTGATAGGCCTTAAACTTTATAGAGCTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCATTACAGTTATGATCAGGACAGTGAGTCAGCTAGCAATAACAAATTATAATGGTTTTGGATATATTTTCTATTGTTTTCAGAGATTTCAAAAGCCTTTCTGATATAAACAAAAACAGTCCCATTGTATTTAAATTTTCAAATCATTTCAGTCTCCCTCGGAATAAACCAGATGTCTATCAATCAGCACCCAGTGACCCTACTGGAGGATTCAGATGGTGAGTACAACTTTAAAAAAATATTCCTCCGCAAAAAAAACCAGTCTCAATTTTGCAAAATAAGTGTTATGTTGTCTGCGTCTTGCTGATAGCTGCTGACTCATAAGAAGTCTTGGAAGTTGAGTAAAAATGAGTGACTAATGATGAACATCGGAAACAATTATTGTTCTGATTATCATTATCTTTAGTGATAAGAGGTTTCCGGTTGATATCTAGATAAAGTTAAAATAAGAGAGCTCAGAGCAACAGAAATTAAGATCAAATTAAGATAATTTTTTTGAAAAAAAAAGATGTTGATATTTCTGATAGGCCTTAAACTTTATAGAGCTGGTATATCTCTAAATAAGATACCGTAACATCCTGTATTTTGCTCCAAATCGAAACTTTTGAACAATTTCGAATTTGTTGCGTTAAGAGCTTCAAAACTAGTGTGAACATGGCTATGCCTTTAAATTCGAAGCTTTGAGTTTAAAGTCTCAAAAGGGGTCTTGAATTGAAATTATCTGAAGTAGATCATGATTATACTCATTTTGAAGCCCTTAGCATTAGAAATGTAAATCTAGCAAATAAATTGAAGTTAAACGAAAAATAAGAGCGCTACGAAGTTTCTAGTCACACAAGTGGACGGTTTTCAAAATCTGAAATTACTGTAACTTGAGCTAATTTTGTCCAGTCATGAAAATTTTGGTATAGTAGAGTTTAGCATAAAAAGAGCTTTAAAACGAGTATAATCATGACTAGAATTCTCGAATTTCGATTTTTCAAATTTTTTGGTCTATGC</canonical>
            <polymorphic>ATCATTACAGTTATGATCAGGACAGTGAGTCAGCTAGCAATAACAAATTATAATGGTTTTGGATATATTTTCTATTGTTTTCAGAGATTTCAAAAGCCTTTCTGATATAAACAAAAACAGTCCCATTGTATTTAAATTTTCAAATCATTTCAGTCTCCCTCGGAATAAACCAGATGTCTATCAATCAGCACCCAGTGACCCTACTGGAGGATTCAGATGGTGAGTACAACTTTAAAAAAATATTCCTCCGCAAAAAAAACCAGTCTCAATTTTGCAAAATAAGTGTTATGTTGTCTGCGTCTTGCTGATAGCTGCTGACTCATAAGAAGTCTTGGAAGTTGAGTAAAAATGAGTGACTAATGATGAACATCGGAAACAATTATTGTTCTGATTATCATTATCTTTAGTGATAAGAGGTTTCCGGTTGATATCTAGATAAAGTTAAAATAAGAGAGCTCAGAGCAACAGAAATTAAGATCAAATTAAGATAATTTTTTTGRAAAAAAAAGATGTTGATATTTCTGATAGGCCTTAAACTTTATAGAGCTGGTATATCTCTAAATAAGATACCGTAACATCCTGTATTTTGCTCCAAATCGAAACTTTTGAACAATTTCGAATTTGTTGCGTTAAGAGCTTCAAAACTAGTGTGAACATGGCTATGCCTTTAAATTCGAAGCTTTGAGTTTAAAGTCTCAAAAGGGGTCTTGAATTGAAATTATCTGAAGTAGATCATGATTATACTCATTTTGAAGCCCTTAGCATTAGAAATGTAAATCTAGCAAATAAATTGAAGTTAAACGAAAAATAAGAGCGCTACGAAGTTTCTAGTCACACAAGTGGACGGTTTTCAAAATCTGAAATTACTGTAACTTGAGCTAATTTTGTCCAGTCATGAAAATTTTGGTATAGTAGAGTTTAGCATAAAAAGAGCTTTAAAACGAGTATAATCATGACTAGAATTCTCGAATTTCGATTTTTCAAATTTTTTGGTCTATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAGAGAGCTCAGAGCAACAG</pcr_primer_p1>
		<pcr_primer_p2>TCCACTTGTGTGACTAGAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>398</pcr_amplicon_size>
		<canonical_amplicon>ATAAGAGAGCTCAGAGCAACAGAAATTAAGATCAAATTAAGATAATTTTTTTGAAAAAAAAAGATGTTGATATTTCTGATAGGCCTTAAACTTTATAGAGCTGGTATATCTCTAAATAAGATACCGTAACATCCTGTATTTTGCTCCAAATCGAAACTTTTGAACAATTTCGAATTTGTTGCGTTAAGAGCTTCAAAACTAGTGTGAACATGGCTATGCCTTTAAATTCGAAGCTTTGAGTTTAAAGTCTCAAAAGGGGTCTTGAATTGAAATTATCTGAAGTAGATCATGATTATACTCATTTTGAAGCCCTTAGCATTAGAAATGTAAATCTAGCAAATAAATTGAAGTTAAACGAAAAATAAGAGCGCTACGAAGTTTCTAGTCACACAAGTGGA</canonical_amplicon>
		<polymorphic_amplicon>ATAAGAGAGCTCAGAGCAACAGAAATTAAGATCAAATTAAGATAATTTTTTTGRAAAAAAAAGATGTTGATATTTCTGATAGGCCTTAAACTTTATAGAGCTGGTATATCTCTAAATAAGATACCGTAACATCCTGTATTTTGCTCCAAATCGAAACTTTTGAACAATTTCGAATTTGTTGCGTTAAGAGCTTCAAAACTAGTGTGAACATGGCTATGCCTTTAAATTCGAAGCTTTGAGTTTAAAGTCTCAAAAGGGGTCTTGAATTGAAATTATCTGAAGTAGATCATGATTATACTCATTTTGAAGCCCTTAGCATTAGAAATGTAAATCTAGCAAATAAATTGAAGTTAAACGAAAAATAAGAGCGCTACGAAGTTTCTAGTCACACAAGTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27616</snp_id>
        <super_contig>c003201051.Contig1</super_contig>
        <contig_pos>44089</contig_pos>
        <strand></strand>
        <context>gtagagttta[G/T]cataaaaaga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTTGAGCTAATTTTGTCCAGTCATGAAAATTTTGGTATAGTAGAGTTTA</left_flank>
        <right_flank>CATAAAAAGAGCTTTAAAACGAGTATAATCATGACTAGAATTCTCGAATT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTGATATCTAGATAAAGTTAAAATAAGAGAGCTCAGAGCAACAGAAATTAAGATCAAATTAAGATAATTTTTTTGAAAAAAAAAGATGTTGATATTTCTGATAGGCCTTAAACTTTATAGAGCTGGTATATCTCTAAATAAGATACCGTAACATCCTGTATTTTGCTCCAAATCGAAACTTTTGAACAATTTCGAATTTGTTGCGTTAAGAGCTTCAAAACTAGTGTGAACATGGCTATGCCTTTAAATTCGAAGCTTTGAGTTTAAAGTCTCAAAAGGGGTCTTGAATTGAAATTATCTGAAGTAGATCATGATTATACTCATTTTGAAGCCCTTAGCATTAGAAATGTAAATCTAGCAAATAAATTGAAGTTAAACGAAAAATAAGAGCGCTACGAAGTTTCTAGTCACACAAGTGGACGGTTTTCAAAATCTGAAATTACTGTAACTTGAGCTAATTTTGTCCAGTCATGAAAATTTTGGTATAGTAGAGTTTAGCATAAAAAGAGCTTTAAAACGAGTATAATCATGACTAGAATTCTCGAATTTCGATTTTTCAAATTTTTTGGTCTATGCGCCTTGAAGCTCAAAAATCAGAAATCAAAATTTAAAACTACATGTTATTATTATACTTATTTTCCAGCTTTAACTGTACTTAATTCACAATTTTAGGTTTCATCAAGTTTGAGATAATCCTGAAAATAAAAATATTTTTGGTTACGGTAGTTGTCTTTGTGGGAACTTAGGCCACGGCCACCGTCGTTTTTTTCCACAGTTCCCATTTTTGAAAGCATAGGTCACTCACTCACCACAACTACAGTACTTTTCCCGACTTTTTTTCGTTATCAACTAGAAAACTCATCATGCGTCTCTATTTCCGATCGAGTCTGATAATTGACAAAAAAGGTTTTTTTCTTCAACTTTACTATTTTTTCAGATTCCACAACACATTCTTCTTCTTCTTCTTCGGACGACAGCGGATCGGAATACACACCTTC</canonical>
            <polymorphic>GGTTGATATCTAGATAAAGTTAAAATAAGAGAGCTCAGAGCAACAGAAATTAAGATCAAATTAAGATAATTTTTTTGAAAAAAAAAGATGTTGATATTTCTGATAGGCCTTAAACTTTATAGAGCTGGTATATCTCTAAATAAGATACCGTAACATCCTGTATTTTGCTCCAAATCGAAACTTTTGAACAATTTCGAATTTGTTGCGTTAAGAGCTTCAAAACTAGTGTGAACATGGCTATGCCTTTAAATTCGAAGCTTTGAGTTTAAAGTCTCAAAAGGGGTCTTGAATTGAAATTATCTGAAGTAGATCATGATTATACTCATTTTGAAGCCCTTAGCATTAGAAATGTAAATCTAGCAAATAAATTGAAGTTAAACGAAAAATAAGAGCGCTACGAAGTTTCTAGTCACACAAGTGGACGGTTTTCAAAATCTGAAATTACTGTAACTTGAGCTAATTTTGTCCAGTCATGAAAATTTTGGTATAGTAGAGTTTAKCATAAAAAGAGCTTTAAAACGAGTATAATCATGACTAGAATTCTCGAATTTCGATTTTTCAAATTTTTTGGTCTATGCGCCTTGAAGCTCAAAAATCAGAAATCAAAATTTAAAACTACATGTTATTATTATACTTATTTTCCAGCTTTAACTGTACTTAATTCACAATTTTAGGTTTCATCAAGTTTGAGATAATCCTGAAAATAAAAATATTTTTGGTTACGGTAGTTGTCTTTGTGGGAACTTAGGCCACGGCCACCGTCGTTTTTTTCCACAGTTCCCATTTTTGAAAGCATAGGTCACTCACTCACCACAACTACAGTACTTTTCCCGACTTTTTTTCGTTATCAACTAGAAAACTCATCATGCGTCTCTATTTCCGATCGAGTCTGATAATTGACAAAAAAGGTTTTTTTCTTCAACTTTACTATTTTTTCAGATTCCACAACACATTCTTCTTCTTCTTCTTCGGACGACAGCGGATCGGAATACACACCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTTTCTAGTCACACAAGTGG</pcr_primer_p1>
		<pcr_primer_p2>TGTGGTGAGTGAGTGACCTAT</pcr_primer_p2>
		<pcr_amplicon_size>417</pcr_amplicon_size>
		<canonical_amplicon>GAAGTTTCTAGTCACACAAGTGGACGGTTTTCAAAATCTGAAATTACTGTAACTTGAGCTAATTTTGTCCAGTCATGAAAATTTTGGTATAGTAGAGTTTAGCATAAAAAGAGCTTTAAAACGAGTATAATCATGACTAGAATTCTCGAATTTCGATTTTTCAAATTTTTTGGTCTATGCGCCTTGAAGCTCAAAAATCAGAAATCAAAATTTAAAACTACATGTTATTATTATACTTATTTTCCAGCTTTAACTGTACTTAATTCACAATTTTAGGTTTCATCAAGTTTGAGATAATCCTGAAAATAAAAATATTTTTGGTTACGGTAGTTGTCTTTGTGGGAACTTAGGCCACGGCCACCGTCGTTTTTTTCCACAGTTCCCATTTTTGAAAGCATAGGTCACTCACTCACCACA</canonical_amplicon>
		<polymorphic_amplicon>GAAGTTTCTAGTCACACAAGTGGACGGTTTTCAAAATCTGAAATTACTGTAACTTGAGCTAATTTTGTCCAGTCATGAAAATTTTGGTATAGTAGAGTTTAKCATAAAAAGAGCTTTAAAACGAGTATAATCATGACTAGAATTCTCGAATTTCGATTTTTCAAATTTTTTGGTCTATGCGCCTTGAAGCTCAAAAATCAGAAATCAAAATTTAAAACTACATGTTATTATTATACTTATTTTCCAGCTTTAACTGTACTTAATTCACAATTTTAGGTTTCATCAAGTTTGAGATAATCCTGAAAATAAAAATATTTTTGGTTACGGTAGTTGTCTTTGTGGGAACTTAGGCCACGGCCACCGTCGTTTTTTTCCACAGTTCCCATTTTTGAAAGCATAGGTCACTCACTCACCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27617</snp_id>
        <super_contig>c003201051.Contig1</super_contig>
        <contig_pos>64111</contig_pos>
        <strand>+</strand>
        <context>TTCAGATGAC[A/C]CGATGGCGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACGTGGCAATGGATATCACTCAACAAACACTGGTCGGGGTTTCAGATGAC</left_flank>
        <right_flank>CGATGGCGGTTTTCAAAAATCCAGCAGCAGAGAAAAAGGTGAAAATTAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCAACAATGGATTCTCAGAATATGTCGATGTCTATGGATATGGATATCACCAGCAACGAGATGATGGCCGCATTCAAATCTCCAAAAATTATGTCTTCTGTCCTCGTCGCCGCCGTCAAGGACTCCGATGACATGGATTTGACGGGGCTTGTGAACACTGCAGCCGAAGACGTTGCAGATGACACGATGGCGGTGTTCAGAACACCAACAAGGGCTCAGACGACGATTCAGAAGACGTCGGGAGAGATTCCAGAATCCGTTGACATGGAGATGACGGGAATCGGGAATTCTGACGCCCCAGATGACACGATGGCGGTGTTCAGAACGCCAACAAGAGCTCAGCAGACGGTTCAGAAGACGTCAGGAGAGATTCCAGAATCCGTTGACATGGAGATGACGTTGCTGGCGTTGCTTCAGCCAGTTTCAGACGTCAAGGATAATTTTGATGACGTGGCAATGGATATCACTCAACAAACACTGGTCGGGGTTTCAGATGACACGATGGCGGTTTTCAAAAATCCAGCAGCAGAGAAAAAGGTGAAAATTAAAATTTTTGAGCTAAAAATTGACTGAAAACCTCTGGAAATTTGGCGATTCAAGCTAAAACTAGAAAATTTCTGCAAAATCTTAAACATTTTTTTCAAAAATTCAAGATTTCAAAATTTCCAGACTCCCGGCAAACCACTATTCGACGAAAGCATGGAAATCGAGTCGACGATCGTTTGTCCAGACAATGTGACGTTTTCTGAGACTGCTCAGCCTGAAAATCCCGCTTATCACAGCTCCATGTTGATGTCTATGGCGTCGGAAGTTTCAGAAGACGTCGTGGTTCAGAAGACGTCAGAATCTCTTCAACAGAGTTCTATGAGGATGTCGACGACGATCACTGAAGATGTGACTGCTTCTAAGAATCCAGAATCCTCCACGATTTCAGAAGTTCAGAAGATTCCAGAAGTTGTTCAGAAGACGTCAAATGGTGTAGAAGACATTCAGAATGCG</canonical>
            <polymorphic>GTCAACAATGGATTCTCAGAATATGTCGATGTCTATGGATATGGATATCACCAGCAACGAGATGATGGCCGCATTCAAATCTCCAAAAATTATGTCTTCTGTCCTCGTCGCCGCCGTCAAGGACTCCGATGACATGGATTTGACGGGGCTTGTGAACACTGCAGCCGAAGACGTTGCAGATGACACGATGGCGGTGTTCAGAACACCAACAAGGGCTCAGACGACGATTCAGAAGACGTCGGGAGAGATTCCAGAATCCGTTGACATGGAGATGACGGGAATCGGGAATTCTGACGCCCCAGATGACACGATGGCGGTGTTCAGAACGCCAACAAGAGCTCAGCAGACGGTTCAGAAGACGTCAGGAGAGATTCCAGAATCCGTTGACATGGAGATGACGTTGCTGGCGTTGCTTCAGCCAGTTTCAGACGTCAAGGATAATTTTGATGACGTGGCAATGGATATCACTCAACAAACACTGGTCGGGGTTTCAGATGACMCGATGGCGGTTTTCAAAAATCCAGCAGCAGAGAAAAAGGTGAAAATTAAAATTTTTGAGCTAAAAATTGACTGAAAACCTCTGGAAATTTGGCGATTCAAGCTAAAACTAGAAAATTTCTGCAAAATCTTAAACATTTTTTTCAAAAATTCAAGATTTCAAAATTTCCAGACTCCCGGCAAACCACTATTCGACGAAAGCATGGAAATCGAGTCGACGATCGTTTGTCCAGACAATGTGACGTTTTCTGAGACTGCTCAGCCTGAAAATCCCGCTTATCACAGCTCCATGTTGATGTCTATGGCGTCGGAAGTTTCAGAAGACGTCGTGGTTCAGAAGACGTCAGAATCTCTTCAACAGAGTTCTATGAGGATGTCGACGACGATCACTGAAGATGTGACTGCTTCTAAGAATCCAGAATCCTCCACGATTTCAGAAGTTCAGAAGATTCCAGAAGTTGTTCAGAAGACGTCAAATGGTGTAGAAGACATTCAGAATGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>144 135 104 103 58 54 54 50 49 41 41 28 27 22 20 13 11 11 11 11 9 4</canonical_bands>
                <polymorphic_bands>144 135 104 103 63 58 54 54 50 49 41 28 27 20 13 11 11 11 11 9 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTTCAGACGTCAAGGATAAT</pcr_primer_p1>
		<pcr_primer_p2>TGGAAATTTTGAAATCTTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGTTTCAGACGTCAAGGATAATTTTGATGACGTGGCAATGGATATCACTCAACAAACACTGGTCGGGGTTTCAGATGACACGATGGCGGTTTTCAAAAATCCAGCAGCAGAGAAAAAGGTGAAAATTAAAATTTTTGAGCTAAAAATTGACTGAAAACCTCTGGAAATTTGGCGATTCAAGCTAAAACTAGAAAATTTCTGCAAAATCTTAAACATTTTTTTCAAAAATTCAAGATTTCAAAATTTCCA</canonical_amplicon>
		<polymorphic_amplicon>AGTTTCAGACGTCAAGGATAATTTTGATGACGTGGCAATGGATATCACTCAACAAACACTGGTCGGGGTTTCAGATGACMCGATGGCGGTTTTCAAAAATCCAGCAGCAGAGAAAAAGGTGAAAATTAAAATTTTTGAGCTAAAAATTGACTGAAAACCTCTGGAAATTTGGCGATTCAAGCTAAAACTAGAAAATTTCTGCAAAATCTTAAACATTTTTTTCAAAAATTCAAGATTTCAAAATTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27618</snp_id>
        <super_contig>c003201051.Contig1</super_contig>
        <contig_pos>88387</contig_pos>
        <strand>+</strand>
        <context>GATAATTTTT[A/C]AATGTGAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGGATCTTCTTATCAAGCGACGGCTGGTTCTACTGGAACAGATAATTTTT</left_flank>
        <right_flank>AATGTGAAATAGAGAATATAATATGCTTACTTCTTCTTTTCATTCTCCTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCACCGACAGCACGAAAACTGGGTGCAGCGAATTCTTGGTACGGAGCTTTCCAGTCATCATCAGAAAGTTTCGCTTCAGGGAGATTTAATACTTTTAGCTCGTCCTTGTTCACTTCTTGGATTTGTGCAAATTCAGTGGGACCTGGAATTTTATTTTGATTGCTTTAATTCTTCGAAAATCTCTTACATTTTACATTAAATGTTAGCTGATCGTTAACAACGTCATCTTCGATGTCAGTAACTAGTTTGTTATCAATAAAACTTCGAACATAACCATCCGGTTGGTGTCGCATCGTGCGAGTTCTTTTAGCGATACGTGGCATCAGAGCCTCTTCTTCACCGTCGATGTCTCTAACGAATTCGTGAACATCCCAATCGTCGACATCTTCGTCTATCAAAGCTTCATCCATATTTTTTCGTTCTTTTCGTGGGCACGCAGACGCTATGGAGGATCTTCTTATCAAGCGACGGCTGGTTCTACTGGAACAGATAATTTTTAAATGTGAAATAGAGAATATAATATGCTTACTTCTTCTTTTCATTCTCCTTGATAATTTCCGAGATTCCATGACAACTCCGATGCCTTTTCAAAGGTTCAGATTGTCCGAATGGATCGTAATCATCTGTGGAATATGTCTTTGCTGCCTGACTGGATGGAGCAAGAGCACGGACAGCAAGTTTCGATTGCTTCGGTAGTTGTTGTACTCGAGGTCTTCGTTTTATTACAAGTGATAATTCAGTTACATCAGATGCTCCTATTCGTTGGACGACACTTGTTAAATCCCATCCGACAACAGTTCTTCCATTAATCATCAGAATCTCGTCTCCAGCGTCAATTTTCGTACAAGCATCTGCTGGGGATCCTTCTTTGATTTCACTAACAACATGGACGCCACGGAATGATGATTGGATATTTAGACCCCAATTGATGTTGCCGGATCTTCTTCGGAGTTGAGCCGTCTCCACAAAAGAGGCATACAAAACCAGCGGATCCTCACA</canonical>
            <polymorphic>ATCACCGACAGCACGAAAACTGGGTGCAGCGAATTCTTGGTACGGAGCTTTCCAGTCATCATCAGAAAGTTTCGCTTCAGGGAGATTTAATACTTTTAGCTCGTCCTTGTTCACTTCTTGGATTTGTGCAAATTCAGTGGGACCTGGAATTTTATTTTGATTGCTTTAATTCTTCGAAAATCTCTTACATTTTACATTAAATGTTAGCTGATCGTTAACAACGTCATCTTCGATGTCAGTAACTAGTTTGTTATCAATAAAACTTCGAACATAACCATCCGGTTGGTGTCGCATCGTGCGAGTTCTTTTAGCGATACGTGGCATCAGAGCCTCTTCTTCACCGTCGATGTCTCTAACGAATTCGTGAACATCCCAATCGTCGACATCTTCGTCTATCAAAGCTTCATCCATATTTTTTCGTTCTTTTCGTGGGCACGCAGACGCTATGGAGGATCTTCTTATCAAGCGACGGCTGGTTCTACTGGAACAGATAATTTTTMAATGTGAAATAGAGAATATAATATGCTTACTTCTTCTTTTCATTCTCCTTGATAATTTCCGAGATTCCATGACAACTCCGATGCCTTTTCAAAGGTTCAGATTGTCCGAATGGATCGTAATCATCTGTGGAATATGTCTTTGCTGCCTGACTGGATGGAGCAAGAGCACGGACAGCAAGTTTCGATTGCTTCGGTAGTTGTTGTACTCGAGGTCTTCGTTTTATTACAAGTGATAATTCAGTTACATCAGATGCTCCTATTCGTTGGACGACACTTGTTAAATCCCATCCGACAACAGTTCTTCCATTAATCATCAGAATCTCGTCTCCAGCGTCAATTTTCGTACAAGCATCTGCTGGGGATCCTTCTTTGATTTCACTAACAACATGGACGCCACGGAATGATGATTGGATATTTAGACCCCAATTGATGTTGCCGGATCTTCTTCGGAGTTGAGCCGTCTCCACAAAAGAGGCATACAAAACCAGCGGATCCTCACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>283 280 193 87 79 31 29 18</canonical_bands>
                <polymorphic_bands>563 193 87 79 31 29 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCAAAGCTTCATCCATATTTT</pcr_primer_p1>
		<pcr_primer_p2>CAAAGACATATTCCACAGATGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATCAAAGCTTCATCCATATTTTTTCGTTCTTTTCGTGGGCACGCAGACGCTATGGAGGATCTTCTTATCAAGCGACGGCTGGTTCTACTGGAACAGATAATTTTTAAATGTGAAATAGAGAATATAATATGCTTACTTCTTCTTTTCATTCTCCTTGATAATTTCCGAGATTCCATGACAACTCCGATGCCTTTTCAAAGGTTCAGATTGTCCGAATGGATCGTAATCATCTGTGGAATATGTCTTTG</canonical_amplicon>
		<polymorphic_amplicon>TATCAAAGCTTCATCCATATTTTTTCGTTCTTTTCGTGGGCACGCAGACGCTATGGAGGATCTTCTTATCAAGCGACGGCTGGTTCTACTGGAACAGATAATTTTTMAATGTGAAATAGAGAATATAATATGCTTACTTCTTCTTTTCATTCTCCTTGATAATTTCCGAGATTCCATGACAACTCCGATGCCTTTTCAAAGGTTCAGATTGTCCGAATGGATCGTAATCATCTGTGGAATATGTCTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27619</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>38568</contig_pos>
        <strand>+</strand>
        <context>GCTATGCGTG[A/T]ATACCGATCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAAGTATGAGAAGTTATATAACATCTGCTCGGTAGCCAAGCTATGCGTG</left_flank>
        <right_flank>ATACCGATCACTATACAAGTCAGAATGAATACACTAGCCCCAAAATAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGAAACAGAGCTATTGACCACATTCTGTTTTTTTTTGCTGGCATCCATTTCTGGTTGCTTATTTTGCTCTGTTTTTTCTAAACAATTTGTTTTTATTCTTCCTCCATTTTTACTCCCCATTCGAGTGATGGATGGTAGGTAGGAGTGCTTGTCCTGTGTGTTGGTCCTTGCTCTTCATGAAATGTTGCCAGGGTCCCGACGAGCGCCGCGCCTAAAAGAAGAGACATGTGGCGCTTGCTTGAACGCATCCGTGCCAGGGTACGGTTGGCACGAGAATCTCTTTTCAATGTTTCTGTGGAGGGACACAAACAAAAAGCCTGCTTTACAATGATTTTTTTCTCGATTCGTGGAGTGCAGACATTTGTTTTCTGGGTCTGAAAGAAGATAGACGAGGGCCAAGAACTGACCTGGGACTGATGATTAAGTAATAAATAAAGGGAAACAATGAGAAGTATGAGAAGTTATATAACATCTGCTCGGTAGCCAAGCTATGCGTGTATACCGATCACTATACAAGTCAGAATGAATACACTAGCCCCAAAATAAAACTCGAAAATCTGTTTCTATGAAGAAACTTGTTTCCTTTACACTGCAGAGAGCATGGACTTCGCCCGAGTGTTTCAATCACGAGAAGAGAGGAGCATTCATCTTGACTGACACATGCCCACTCATTAGAACTCTAGTTCTGTCTTTTTTCATCTCAGAAGAAAAAATGATGACCTAAAAATGTGATGAACTTCAAAACCGAGAAAGCAAGACTCTGAATTGAGAAGAAGAGAGTGAGCCAACATCCAGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGC</canonical>
            <polymorphic>TATGAAACAGAGCTATTGACCACATTCTGTTTTTTTTTGCTGGCATCCATTTCTGGTTGCTTATTTTGCTCTGTTTTTTCTAAACAATTTGTTTTTATTCTTCCTCCATTTTTACTCCCCATTCGAGTGATGGATGGTAGGTAGGAGTGCTTGTCCTGTGTGTTGGTCCTTGCTCTTCATGAAATGTTGCCAGGGTCCCGACGAGCGCCGCGCCTAAAAGAAGAGACATGTGGCGCTTGCTTGAACGCATCCGTGCCAGGGTACGGTTGGCACGAGAATCTCTTTTCAATGTTTCTGTGGAGGGACACAAACAAAAAGCCTGCTTTACAATGATTTTTTTCTCGATTCGTGGAGTGCAGACATTTGTTTTCTGGGTCTGAAAGAAGATAGACGAGGGCCAAGAACTGACCTGGGACTGATGATTAAGTAATAAATAAAGGGAAACAATGAGAAGTATGAGAAGTTATATAACATCTGCTCGGTAGCCAAGCTATGCGTGWATACCGATCACTATACAAGTCAGAATGAATACACTAGCCCCAAAATAAAACTCGAAAATCTGTTTCTATGAAGAAACTTGTTTCCTTTACACTGCAGAGAGCATGGACTTCGCCCGAGTGTTTCAATCACGAGAAGAGAGGAGCATTCATCTTGACTGACACATGCCCACTCATTAGAACTCTAGTTCTGTCTTTTTTCATCTCAGAAGAAAAAATGATGACCTAAAAATGTGATGAACTTCAAAACCGAGAAAGCAAGACTCTGAATTGAGAAGAAGAGAGTGAGCCAACATCCAGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTATAC</site>
                <isoschizomers>
                    <enzyme>BssNAI</enzyme>
                    <enzyme>Bst1107I</enzyme>
                    <enzyme>BstZ17I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGCCTGCTTTACAATGAT</pcr_primer_p1>
		<pcr_primer_p2>ACAGATTTTCGAGTTTTATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAGCCTGCTTTACAATGATTTTTTTCTCGATTCGTGGAGTGCAGACATTTGTTTTCTGGGTCTGAAAGAAGATAGACGAGGGCCAAGAACTGACCTGGGACTGATGATTAAGTAATAAATAAAGGGAAACAATGAGAAGTATGAGAAGTTATATAACATCTGCTCGGTAGCCAAGCTATGCGTGTATACCGATCACTATACAAGTCAGAATGAATACACTAGCCCCAAAATAAAACTCGAAAATCTGT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGCCTGCTTTACAATGATTTTTTTCTCGATTCGTGGAGTGCAGACATTTGTTTTCTGGGTCTGAAAGAAGATAGACGAGGGCCAAGAACTGACCTGGGACTGATGATTAAGTAATAAATAAAGGGAAACAATGAGAAGTATGAGAAGTTATATAACATCTGCTCGGTAGCCAAGCTATGCGTGWATACCGATCACTATACAAGTCAGAATGAATACACTAGCCCCAAAATAAAACTCGAAAATCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27620</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>38695</contig_pos>
        <strand>+</strand>
        <context>AGTGTTTCAA[G/T]CACGAGAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTGTTTCCTTTACACTGCAGAGAGCATGGACTTCGCCCGAGTGTTTCAA</left_flank>
        <right_flank>CACGAGAAGAGAGGAGCATTCATCTTGACTGACACATGCCCACTCATTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATGGATGGTAGGTAGGAGTGCTTGTCCTGTGTGTTGGTCCTTGCTCTTCATGAAATGTTGCCAGGGTCCCGACGAGCGCCGCGCCTAAAAGAAGAGACATGTGGCGCTTGCTTGAACGCATCCGTGCCAGGGTACGGTTGGCACGAGAATCTCTTTTCAATGTTTCTGTGGAGGGACACAAACAAAAAGCCTGCTTTACAATGATTTTTTTCTCGATTCGTGGAGTGCAGACATTTGTTTTCTGGGTCTGAAAGAAGATAGACGAGGGCCAAGAACTGACCTGGGACTGATGATTAAGTAATAAATAAAGGGAAACAATGAGAAGTATGAGAAGTTATATAACATCTGCTCGGTAGCCAAGCTATGCGTGTATACCGATCACTATACAAGTCAGAATGAATACACTAGCCCCAAAATAAAACTCGAAAATCTGTTTCTATGAAGAAACTTGTTTCCTTTACACTGCAGAGAGCATGGACTTCGCCCGAGTGTTTCAATCACGAGAAGAGAGGAGCATTCATCTTGACTGACACATGCCCACTCATTAGAACTCTAGTTCTGTCTTTTTTCATCTCAGAAGAAAAAATGATGACCTAAAAATGTGATGAACTTCAAAACCGAGAAAGCAAGACTCTGAATTGAGAAGAAGAGAGTGAGCCAACATCCAGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTTGCTGGTCGACAGGCATTTCAGAAGCAGTCATGGGTTTGGCAGTAGTGGTGTGGGCGTCTGGAGAGTTGGATTCAAGTTCAAAGTTG</canonical>
            <polymorphic>TGATGGATGGTAGGTAGGAGTGCTTGTCCTGTGTGTTGGTCCTTGCTCTTCATGAAATGTTGCCAGGGTCCCGACGAGCGCCGCGCCTAAAAGAAGAGACATGTGGCGCTTGCTTGAACGCATCCGTGCCAGGGTACGGTTGGCACGAGAATCTCTTTTCAATGTTTCTGTGGAGGGACACAAACAAAAAGCCTGCTTTACAATGATTTTTTTCTCGATTCGTGGAGTGCAGACATTTGTTTTCTGGGTCTGAAAGAAGATAGACGAGGGCCAAGAACTGACCTGGGACTGATGATTAAGTAATAAATAAAGGGAAACAATGAGAAGTATGAGAAGTTATATAACATCTGCTCGGTAGCCAAGCTATGCGTGTATACCGATCACTATACAAGTCAGAATGAATACACTAGCCCCAAAATAAAACTCGAAAATCTGTTTCTATGAAGAAACTTGTTTCCTTTACACTGCAGAGAGCATGGACTTCGCCCGAGTGTTTCAAKCACGAGAAGAGAGGAGCATTCATCTTGACTGACACATGCCCACTCATTAGAACTCTAGTTCTGTCTTTTTTCATCTCAGAAGAAAAAATGATGACCTAAAAATGTGATGAACTTCAAAACCGAGAAAGCAAGACTCTGAATTGAGAAGAAGAGAGTGAGCCAACATCCAGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTTGCTGGTCGACAGGCATTTCAGAAGCAGTCATGGGTTTGGCAGTAGTGGTGTGGGCGTCTGGAGAGTTGGATTCAAGTTCAAAGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>287 196 144 143 109 51 28 23 19</canonical_bands>
                <polymorphic_bands>310 196 144 143 109 51 28 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGAAACTTGTTTCCTTTACACT</pcr_primer_p1>
		<pcr_primer_p2>TTCTTCTTGTTTTGAAACAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGAAACTTGTTTCCTTTACACTGCAGAGAGCATGGACTTCGCCCGAGTGTTTCAATCACGAGAAGAGAGGAGCATTCATCTTGACTGACACATGCCCACTCATTAGAACTCTAGTTCTGTCTTTTTTCATCTCAGAAGAAAAAATGATGACCTAAAAATGTGATGAACTTCAAAACCGAGAAAGCAAGACTCTGAATTGAGAAGAAGAGAGTGAGCCAACATCCAGAACTGTTTCAAAACAAGAAGAA</canonical_amplicon>
		<polymorphic_amplicon>GAAGAAACTTGTTTCCTTTACACTGCAGAGAGCATGGACTTCGCCCGAGTGTTTCAAKCACGAGAAGAGAGGAGCATTCATCTTGACTGACACATGCCCACTCATTAGAACTCTAGTTCTGTCTTTTTTCATCTCAGAAGAAAAAATGATGACCTAAAAATGTGATGAACTTCAAAACCGAGAAAGCAAGACTCTGAATTGAGAAGAAGAGAGTGAGCCAACATCCAGAACTGTTTCAAAACAAGAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27621</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>38824</contig_pos>
        <strand>+</strand>
        <context>ACCGAGAAAG[C/G]AAGACTCTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAAGAAAAAATGATGACCTAAAAATGTGATGAACTTCAAAACCGAGAAAG</left_flank>
        <right_flank>AAGACTCTGAATTGAGAAGAAGAGAGTGAGCCAACATCCAGAACTGTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGGGTACGGTTGGCACGAGAATCTCTTTTCAATGTTTCTGTGGAGGGACACAAACAAAAAGCCTGCTTTACAATGATTTTTTTCTCGATTCGTGGAGTGCAGACATTTGTTTTCTGGGTCTGAAAGAAGATAGACGAGGGCCAAGAACTGACCTGGGACTGATGATTAAGTAATAAATAAAGGGAAACAATGAGAAGTATGAGAAGTTATATAACATCTGCTCGGTAGCCAAGCTATGCGTGTATACCGATCACTATACAAGTCAGAATGAATACACTAGCCCCAAAATAAAACTCGAAAATCTGTTTCTATGAAGAAACTTGTTTCCTTTACACTGCAGAGAGCATGGACTTCGCCCGAGTGTTTCAATCACGAGAAGAGAGGAGCATTCATCTTGACTGACACATGCCCACTCATTAGAACTCTAGTTCTGTCTTTTTTCATCTCAGAAGAAAAAATGATGACCTAAAAATGTGATGAACTTCAAAACCGAGAAAGCAAGACTCTGAATTGAGAAGAAGAGAGTGAGCCAACATCCAGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTTGCTGGTCGACAGGCATTTCAGAAGCAGTCATGGGTTTGGCAGTAGTGGTGTGGGCGTCTGGAGAGTTGGATTCAAGTTCAAAGTTGCACAAATGTTTGTTGTCGCAGAAGCATCTCTCCACCACTTTCTTGTATTCCTTTTCGTACTGAAATAAACAAAATTTCTAATTGATCGCCGAAGTGACCAATCAACTCACAGTGACATGGCAGATTTTG</canonical>
            <polymorphic>CAGGGTACGGTTGGCACGAGAATCTCTTTTCAATGTTTCTGTGGAGGGACACAAACAAAAAGCCTGCTTTACAATGATTTTTTTCTCGATTCGTGGAGTGCAGACATTTGTTTTCTGGGTCTGAAAGAAGATAGACGAGGGCCAAGAACTGACCTGGGACTGATGATTAAGTAATAAATAAAGGGAAACAATGAGAAGTATGAGAAGTTATATAACATCTGCTCGGTAGCCAAGCTATGCGTGTATACCGATCACTATACAAGTCAGAATGAATACACTAGCCCCAAAATAAAACTCGAAAATCTGTTTCTATGAAGAAACTTGTTTCCTTTACACTGCAGAGAGCATGGACTTCGCCCGAGTGTTTCAATCACGAGAAGAGAGGAGCATTCATCTTGACTGACACATGCCCACTCATTAGAACTCTAGTTCTGTCTTTTTTCATCTCAGAAGAAAAAATGATGACCTAAAAATGTGATGAACTTCAAAACCGAGAAAGSAAGACTCTGAATTGAGAAGAAGAGAGTGAGCCAACATCCAGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTTGCTGGTCGACAGGCATTTCAGAAGCAGTCATGGGTTTGGCAGTAGTGGTGTGGGCGTCTGGAGAGTTGGATTCAAGTTCAAAGTTGCACAAATGTTTGTTGTCGCAGAAGCATCTCTCCACCACTTTCTTGTATTCCTTTTCGTACTGAAATAAACAAAATTTCTAATTGATCGCCGAAGTGACCAATCAACTCACAGTGACATGGCAGATTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGAAACTTGTTTCCTTTACACT</pcr_primer_p1>
		<pcr_primer_p2>TTCTTCTTGTTTTGAAACAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGAAACTTGTTTCCTTTACACTGCAGAGAGCATGGACTTCGCCCGAGTGTTTCAATCACGAGAAGAGAGGAGCATTCATCTTGACTGACACATGCCCACTCATTAGAACTCTAGTTCTGTCTTTTTTCATCTCAGAAGAAAAAATGATGACCTAAAAATGTGATGAACTTCAAAACCGAGAAAGCAAGACTCTGAATTGAGAAGAAGAGAGTGAGCCAACATCCAGAACTGTTTCAAAACAAGAAGAA</canonical_amplicon>
		<polymorphic_amplicon>GAAGAAACTTGTTTCCTTTACACTGCAGAGAGCATGGACTTCGCCCGAGTGTTTCAATCACGAGAAGAGAGGAGCATTCATCTTGACTGACACATGCCCACTCATTAGAACTCTAGTTCTGTCTTTTTTCATCTCAGAAGAAAAAATGATGACCTAAAAATGTGATGAACTTCAAAACCGAGAAAGSAAGACTCTGAATTGAGAAGAAGAGAGTGAGCCAACATCCAGAACTGTTTCAAAACAAGAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27622</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>38895</contig_pos>
        <strand>+</strand>
        <context>GAAGAACGAC[A/G]GAACGGACTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAGAGTGAGCCAACATCCAGAACTGTTTCAAAACAAGAAGAAGAACGAC</left_flank>
        <right_flank>GAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATGATTTTTTTCTCGATTCGTGGAGTGCAGACATTTGTTTTCTGGGTCTGAAAGAAGATAGACGAGGGCCAAGAACTGACCTGGGACTGATGATTAAGTAATAAATAAAGGGAAACAATGAGAAGTATGAGAAGTTATATAACATCTGCTCGGTAGCCAAGCTATGCGTGTATACCGATCACTATACAAGTCAGAATGAATACACTAGCCCCAAAATAAAACTCGAAAATCTGTTTCTATGAAGAAACTTGTTTCCTTTACACTGCAGAGAGCATGGACTTCGCCCGAGTGTTTCAATCACGAGAAGAGAGGAGCATTCATCTTGACTGACACATGCCCACTCATTAGAACTCTAGTTCTGTCTTTTTTCATCTCAGAAGAAAAAATGATGACCTAAAAATGTGATGAACTTCAAAACCGAGAAAGCAAGACTCTGAATTGAGAAGAAGAGAGTGAGCCAACATCCAGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTTGCTGGTCGACAGGCATTTCAGAAGCAGTCATGGGTTTGGCAGTAGTGGTGTGGGCGTCTGGAGAGTTGGATTCAAGTTCAAAGTTGCACAAATGTTTGTTGTCGCAGAAGCATCTCTCCACCACTTTCTTGTATTCCTTTTCGTACTGAAATAAACAAAATTTCTAATTGATCGCCGAAGTGACCAATCAACTCACAGTGACATGGCAGATTTTGTTGAACTCCAAGAAGGTGGTGTTGGAGCCCTCGTACCAGCTTTGCTTGGTTTCGGCAATGAAGACCTTGAC</canonical>
            <polymorphic>CAATGATTTTTTTCTCGATTCGTGGAGTGCAGACATTTGTTTTCTGGGTCTGAAAGAAGATAGACGAGGGCCAAGAACTGACCTGGGACTGATGATTAAGTAATAAATAAAGGGAAACAATGAGAAGTATGAGAAGTTATATAACATCTGCTCGGTAGCCAAGCTATGCGTGTATACCGATCACTATACAAGTCAGAATGAATACACTAGCCCCAAAATAAAACTCGAAAATCTGTTTCTATGAAGAAACTTGTTTCCTTTACACTGCAGAGAGCATGGACTTCGCCCGAGTGTTTCAATCACGAGAAGAGAGGAGCATTCATCTTGACTGACACATGCCCACTCATTAGAACTCTAGTTCTGTCTTTTTTCATCTCAGAAGAAAAAATGATGACCTAAAAATGTGATGAACTTCAAAACCGAGAAAGCAAGACTCTGAATTGAGAAGAAGAGAGTGAGCCAACATCCAGAACTGTTTCAAAACAAGAAGAAGAACGACRGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTTGCTGGTCGACAGGCATTTCAGAAGCAGTCATGGGTTTGGCAGTAGTGGTGTGGGCGTCTGGAGAGTTGGATTCAAGTTCAAAGTTGCACAAATGTTTGTTGTCGCAGAAGCATCTCTCCACCACTTTCTTGTATTCCTTTTCGTACTGAAATAAACAAAATTTCTAATTGATCGCCGAAGTGACCAATCAACTCACAGTGACATGGCAGATTTTGTTGAACTCCAAGAAGGTGGTGTTGGAGCCCTCGTACCAGCTTTGCTTGGTTTCGGCAATGAAGACCTTGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAAGAGAGTGAGCCAACAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTGACGATTTTAGAAGAGC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGAAGAGAGTGAGCCAACATCCAGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTT</canonical_amplicon>
		<polymorphic_amplicon>AAGAAGAGAGTGAGCCAACATCCAGAACTGTTTCAAAACAAGAAGAAGAACGACRGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27623</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>38917</contig_pos>
        <strand>+</strand>
        <context>GGAAAATCTG[A/G]ATCAAAGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTG</left_flank>
        <right_flank>ATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAGTGCAGACATTTGTTTTCTGGGTCTGAAAGAAGATAGACGAGGGCCAAGAACTGACCTGGGACTGATGATTAAGTAATAAATAAAGGGAAACAATGAGAAGTATGAGAAGTTATATAACATCTGCTCGGTAGCCAAGCTATGCGTGTATACCGATCACTATACAAGTCAGAATGAATACACTAGCCCCAAAATAAAACTCGAAAATCTGTTTCTATGAAGAAACTTGTTTCCTTTACACTGCAGAGAGCATGGACTTCGCCCGAGTGTTTCAATCACGAGAAGAGAGGAGCATTCATCTTGACTGACACATGCCCACTCATTAGAACTCTAGTTCTGTCTTTTTTCATCTCAGAAGAAAAAATGATGACCTAAAAATGTGATGAACTTCAAAACCGAGAAAGCAAGACTCTGAATTGAGAAGAAGAGAGTGAGCCAACATCCAGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTTGCTGGTCGACAGGCATTTCAGAAGCAGTCATGGGTTTGGCAGTAGTGGTGTGGGCGTCTGGAGAGTTGGATTCAAGTTCAAAGTTGCACAAATGTTTGTTGTCGCAGAAGCATCTCTCCACCACTTTCTTGTATTCCTTTTCGTACTGAAATAAACAAAATTTCTAATTGATCGCCGAAGTGACCAATCAACTCACAGTGACATGGCAGATTTTGTTGAACTCCAAGAAGGTGGTGTTGGAGCCCTCGTACCAGCTTTGCTTGGTTTCGGCAATGAAGACCTTGACGCAGGTGACGAATTCGCCCATC</canonical>
            <polymorphic>TGGAGTGCAGACATTTGTTTTCTGGGTCTGAAAGAAGATAGACGAGGGCCAAGAACTGACCTGGGACTGATGATTAAGTAATAAATAAAGGGAAACAATGAGAAGTATGAGAAGTTATATAACATCTGCTCGGTAGCCAAGCTATGCGTGTATACCGATCACTATACAAGTCAGAATGAATACACTAGCCCCAAAATAAAACTCGAAAATCTGTTTCTATGAAGAAACTTGTTTCCTTTACACTGCAGAGAGCATGGACTTCGCCCGAGTGTTTCAATCACGAGAAGAGAGGAGCATTCATCTTGACTGACACATGCCCACTCATTAGAACTCTAGTTCTGTCTTTTTTCATCTCAGAAGAAAAAATGATGACCTAAAAATGTGATGAACTTCAAAACCGAGAAAGCAAGACTCTGAATTGAGAAGAAGAGAGTGAGCCAACATCCAGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGRATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTTGCTGGTCGACAGGCATTTCAGAAGCAGTCATGGGTTTGGCAGTAGTGGTGTGGGCGTCTGGAGAGTTGGATTCAAGTTCAAAGTTGCACAAATGTTTGTTGTCGCAGAAGCATCTCTCCACCACTTTCTTGTATTCCTTTTCGTACTGAAATAAACAAAATTTCTAATTGATCGCCGAAGTGACCAATCAACTCACAGTGACATGGCAGATTTTGTTGAACTCCAAGAAGGTGGTGTTGGAGCCCTCGTACCAGCTTTGCTTGGTTTCGGCAATGAAGACCTTGACGCAGGTGACGAATTCGCCCATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>410 262 239 89</canonical_bands>
                <polymorphic_bands>410 351 239</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>288 183 144 122 83 67 59 29 25</canonical_bands>
                <polymorphic_bands>288 183 150 144 122 59 29 25</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>499 262 239</canonical_bands>
                <polymorphic_bands>761 239</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAACTGTTTCAAAACAAGAAGA</pcr_primer_p1>
		<pcr_primer_p2>AAATCAGAACTATTGAGCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTT</canonical_amplicon>
		<polymorphic_amplicon>AGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGRATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27624</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>38983</contig_pos>
        <strand>+</strand>
        <context>GGAATTTTCG[A/G]AATGMGAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCG</left_flank>
        <right_flank>AATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGATGATTAAGTAATAAATAAAGGGAAACAATGAGAAGTATGAGAAGTTATATAACATCTGCTCGGTAGCCAAGCTATGCGTGTATACCGATCACTATACAAGTCAGAATGAATACACTAGCCCCAAAATAAAACTCGAAAATCTGTTTCTATGAAGAAACTTGTTTCCTTTACACTGCAGAGAGCATGGACTTCGCCCGAGTGTTTCAATCACGAGAAGAGAGGAGCATTCATCTTGACTGACACATGCCCACTCATTAGAACTCTAGTTCTGTCTTTTTTCATCTCAGAAGAAAAAATGATGACCTAAAAATGTGATGAACTTCAAAACCGAGAAAGCAAGACTCTGAATTGAGAAGAAGAGAGTGAGCCAACATCCAGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTTGCTGGTCGACAGGCATTTCAGAAGCAGTCATGGGTTTGGCAGTAGTGGTGTGGGCGTCTGGAGAGTTGGATTCAAGTTCAAAGTTGCACAAATGTTTGTTGTCGCAGAAGCATCTCTCCACCACTTTCTTGTATTCCTTTTCGTACTGAAATAAACAAAATTTCTAATTGATCGCCGAAGTGACCAATCAACTCACAGTGACATGGCAGATTTTGTTGAACTCCAAGAAGGTGGTGTTGGAGCCCTCGTACCAGCTTTGCTTGGTTTCGGCAATGAAGACCTTGACGCAGGTGACGAATTCGCCCATCTTCAACGTGTCGATTGGTCCTACGAAACATTTGATCGAGGTTGCTGGGTGAGCAATGAAGATGATG</canonical>
            <polymorphic>CTGATGATTAAGTAATAAATAAAGGGAAACAATGAGAAGTATGAGAAGTTATATAACATCTGCTCGGTAGCCAAGCTATGCGTGTATACCGATCACTATACAAGTCAGAATGAATACACTAGCCCCAAAATAAAACTCGAAAATCTGTTTCTATGAAGAAACTTGTTTCCTTTACACTGCAGAGAGCATGGACTTCGCCCGAGTGTTTCAATCACGAGAAGAGAGGAGCATTCATCTTGACTGACACATGCCCACTCATTAGAACTCTAGTTCTGTCTTTTTTCATCTCAGAAGAAAAAATGATGACCTAAAAATGTGATGAACTTCAAAACCGAGAAAGCAAGACTCTGAATTGAGAAGAAGAGAGTGAGCCAACATCCAGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGRAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTTGCTGGTCGACAGGCATTTCAGAAGCAGTCATGGGTTTGGCAGTAGTGGTGTGGGCGTCTGGAGAGTTGGATTCAAGTTCAAAGTTGCACAAATGTTTGTTGTCGCAGAAGCATCTCTCCACCACTTTCTTGTATTCCTTTTCGTACTGAAATAAACAAAATTTCTAATTGATCGCCGAAGTGACCAATCAACTCACAGTGACATGGCAGATTTTGTTGAACTCCAAGAAGGTGGTGTTGGAGCCCTCGTACCAGCTTTGCTTGGTTTCGGCAATGAAGACCTTGACGCAGGTGACGAATTCGCCCATCTTCAACGTGTCGATTGGTCCTACGAAACATTTGATCGAGGTTGCTGGGTGAGCAATGAAGATGATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>354 183 122 107 83 67 59 25</canonical_bands>
                <polymorphic_bands>354 189 183 107 83 59 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAACTGTTTCAAAACAAGAAGA</pcr_primer_p1>
		<pcr_primer_p2>AAATCAGAACTATTGAGCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTT</canonical_amplicon>
		<polymorphic_amplicon>AGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGRAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27625</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>38988</contig_pos>
        <strand>+</strand>
        <context>TTTCGRAATG[A/C]GAAATAAACA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATG</left_flank>
        <right_flank>GAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTAAGTAATAAATAAAGGGAAACAATGAGAAGTATGAGAAGTTATATAACATCTGCTCGGTAGCCAAGCTATGCGTGTATACCGATCACTATACAAGTCAGAATGAATACACTAGCCCCAAAATAAAACTCGAAAATCTGTTTCTATGAAGAAACTTGTTTCCTTTACACTGCAGAGAGCATGGACTTCGCCCGAGTGTTTCAATCACGAGAAGAGAGGAGCATTCATCTTGACTGACACATGCCCACTCATTAGAACTCTAGTTCTGTCTTTTTTCATCTCAGAAGAAAAAATGATGACCTAAAAATGTGATGAACTTCAAAACCGAGAAAGCAAGACTCTGAATTGAGAAGAAGAGAGTGAGCCAACATCCAGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTTGCTGGTCGACAGGCATTTCAGAAGCAGTCATGGGTTTGGCAGTAGTGGTGTGGGCGTCTGGAGAGTTGGATTCAAGTTCAAAGTTGCACAAATGTTTGTTGTCGCAGAAGCATCTCTCCACCACTTTCTTGTATTCCTTTTCGTACTGAAATAAACAAAATTTCTAATTGATCGCCGAAGTGACCAATCAACTCACAGTGACATGGCAGATTTTGTTGAACTCCAAGAAGGTGGTGTTGGAGCCCTCGTACCAGCTTTGCTTGGTTTCGGCAATGAAGACCTTGACGCAGGTGACGAATTCGCCCATCTTCAACGTGTCGATTGGTCCTACGAAACATTTGATCGAGGTTGCTGGGTGAGCAATGAAGATGATGGCAAT</canonical>
            <polymorphic>GATTAAGTAATAAATAAAGGGAAACAATGAGAAGTATGAGAAGTTATATAACATCTGCTCGGTAGCCAAGCTATGCGTGTATACCGATCACTATACAAGTCAGAATGAATACACTAGCCCCAAAATAAAACTCGAAAATCTGTTTCTATGAAGAAACTTGTTTCCTTTACACTGCAGAGAGCATGGACTTCGCCCGAGTGTTTCAATCACGAGAAGAGAGGAGCATTCATCTTGACTGACACATGCCCACTCATTAGAACTCTAGTTCTGTCTTTTTTCATCTCAGAAGAAAAAATGATGACCTAAAAATGTGATGAACTTCAAAACCGAGAAAGCAAGACTCTGAATTGAGAAGAAGAGAGTGAGCCAACATCCAGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGMGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTTGCTGGTCGACAGGCATTTCAGAAGCAGTCATGGGTTTGGCAGTAGTGGTGTGGGCGTCTGGAGAGTTGGATTCAAGTTCAAAGTTGCACAAATGTTTGTTGTCGCAGAAGCATCTCTCCACCACTTTCTTGTATTCCTTTTCGTACTGAAATAAACAAAATTTCTAATTGATCGCCGAAGTGACCAATCAACTCACAGTGACATGGCAGATTTTGTTGAACTCCAAGAAGGTGGTGTTGGAGCCCTCGTACCAGCTTTGCTTGGTTTCGGCAATGAAGACCTTGACGCAGGTGACGAATTCGCCCATCTTCAACGTGTCGATTGGTCCTACGAAACATTTGATCGAGGTTGCTGGGTGAGCAATGAAGATGATGGCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAACTGTTTCAAAACAAGAAGA</pcr_primer_p1>
		<pcr_primer_p2>AAATCAGAACTATTGAGCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTT</canonical_amplicon>
		<polymorphic_amplicon>AGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGMGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27626</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>38999</contig_pos>
        <strand>+</strand>
        <context>GAAATAAACA[A/T]TRATTGCTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACA</left_flank>
        <right_flank>TGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATAAAGGGAAACAATGAGAAGTATGAGAAGTTATATAACATCTGCTCGGTAGCCAAGCTATGCGTGTATACCGATCACTATACAAGTCAGAATGAATACACTAGCCCCAAAATAAAACTCGAAAATCTGTTTCTATGAAGAAACTTGTTTCCTTTACACTGCAGAGAGCATGGACTTCGCCCGAGTGTTTCAATCACGAGAAGAGAGGAGCATTCATCTTGACTGACACATGCCCACTCATTAGAACTCTAGTTCTGTCTTTTTTCATCTCAGAAGAAAAAATGATGACCTAAAAATGTGATGAACTTCAAAACCGAGAAAGCAAGACTCTGAATTGAGAAGAAGAGAGTGAGCCAACATCCAGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTTGCTGGTCGACAGGCATTTCAGAAGCAGTCATGGGTTTGGCAGTAGTGGTGTGGGCGTCTGGAGAGTTGGATTCAAGTTCAAAGTTGCACAAATGTTTGTTGTCGCAGAAGCATCTCTCCACCACTTTCTTGTATTCCTTTTCGTACTGAAATAAACAAAATTTCTAATTGATCGCCGAAGTGACCAATCAACTCACAGTGACATGGCAGATTTTGTTGAACTCCAAGAAGGTGGTGTTGGAGCCCTCGTACCAGCTTTGCTTGGTTTCGGCAATGAAGACCTTGACGCAGGTGACGAATTCGCCCATCTTCAACGTGTCGATTGGTCCTACGAAACATTTGATCGAGGTTGCTGGGTGAGCAATGAAGATGATGGCAATGACGCCGATAA</canonical>
            <polymorphic>AAATAAAGGGAAACAATGAGAAGTATGAGAAGTTATATAACATCTGCTCGGTAGCCAAGCTATGCGTGTATACCGATCACTATACAAGTCAGAATGAATACACTAGCCCCAAAATAAAACTCGAAAATCTGTTTCTATGAAGAAACTTGTTTCCTTTACACTGCAGAGAGCATGGACTTCGCCCGAGTGTTTCAATCACGAGAAGAGAGGAGCATTCATCTTGACTGACACATGCCCACTCATTAGAACTCTAGTTCTGTCTTTTTTCATCTCAGAAGAAAAAATGATGACCTAAAAATGTGATGAACTTCAAAACCGAGAAAGCAAGACTCTGAATTGAGAAGAAGAGAGTGAGCCAACATCCAGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAWTGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTTGCTGGTCGACAGGCATTTCAGAAGCAGTCATGGGTTTGGCAGTAGTGGTGTGGGCGTCTGGAGAGTTGGATTCAAGTTCAAAGTTGCACAAATGTTTGTTGTCGCAGAAGCATCTCTCCACCACTTTCTTGTATTCCTTTTCGTACTGAAATAAACAAAATTTCTAATTGATCGCCGAAGTGACCAATCAACTCACAGTGACATGGCAGATTTTGTTGAACTCCAAGAAGGTGGTGTTGGAGCCCTCGTACCAGCTTTGCTTGGTTTCGGCAATGAAGACCTTGACGCAGGTGACGAATTCGCCCATCTTCAACGTGTCGATTGGTCCTACGAAACATTTGATCGAGGTTGCTGGGTGAGCAATGAAGATGATGGCAATGACGCCGATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAACTGTTTCAAAACAAGAAGA</pcr_primer_p1>
		<pcr_primer_p2>AAATCAGAACTATTGAGCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTT</canonical_amplicon>
		<polymorphic_amplicon>AGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAWTGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27627</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>39001</contig_pos>
        <strand>+</strand>
        <context>AATAAACAWT[A/G]ATTGCTGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAAT</left_flank>
        <right_flank>ATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAAGGGAAACAATGAGAAGTATGAGAAGTTATATAACATCTGCTCGGTAGCCAAGCTATGCGTGTATACCGATCACTATACAAGTCAGAATGAATACACTAGCCCCAAAATAAAACTCGAAAATCTGTTTCTATGAAGAAACTTGTTTCCTTTACACTGCAGAGAGCATGGACTTCGCCCGAGTGTTTCAATCACGAGAAGAGAGGAGCATTCATCTTGACTGACACATGCCCACTCATTAGAACTCTAGTTCTGTCTTTTTTCATCTCAGAAGAAAAAATGATGACCTAAAAATGTGATGAACTTCAAAACCGAGAAAGCAAGACTCTGAATTGAGAAGAAGAGAGTGAGCCAACATCCAGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTTGCTGGTCGACAGGCATTTCAGAAGCAGTCATGGGTTTGGCAGTAGTGGTGTGGGCGTCTGGAGAGTTGGATTCAAGTTCAAAGTTGCACAAATGTTTGTTGTCGCAGAAGCATCTCTCCACCACTTTCTTGTATTCCTTTTCGTACTGAAATAAACAAAATTTCTAATTGATCGCCGAAGTGACCAATCAACTCACAGTGACATGGCAGATTTTGTTGAACTCCAAGAAGGTGGTGTTGGAGCCCTCGTACCAGCTTTGCTTGGTTTCGGCAATGAAGACCTTGACGCAGGTGACGAATTCGCCCATCTTCAACGTGTCGATTGGTCCTACGAAACATTTGATCGAGGTTGCTGGGTGAGCAATGAAGATGATGGCAATGACGCCGATAATC</canonical>
            <polymorphic>ATAAAGGGAAACAATGAGAAGTATGAGAAGTTATATAACATCTGCTCGGTAGCCAAGCTATGCGTGTATACCGATCACTATACAAGTCAGAATGAATACACTAGCCCCAAAATAAAACTCGAAAATCTGTTTCTATGAAGAAACTTGTTTCCTTTACACTGCAGAGAGCATGGACTTCGCCCGAGTGTTTCAATCACGAGAAGAGAGGAGCATTCATCTTGACTGACACATGCCCACTCATTAGAACTCTAGTTCTGTCTTTTTTCATCTCAGAAGAAAAAATGATGACCTAAAAATGTGATGAACTTCAAAACCGAGAAAGCAAGACTCTGAATTGAGAAGAAGAGAGTGAGCCAACATCCAGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATRATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTTGCTGGTCGACAGGCATTTCAGAAGCAGTCATGGGTTTGGCAGTAGTGGTGTGGGCGTCTGGAGAGTTGGATTCAAGTTCAAAGTTGCACAAATGTTTGTTGTCGCAGAAGCATCTCTCCACCACTTTCTTGTATTCCTTTTCGTACTGAAATAAACAAAATTTCTAATTGATCGCCGAAGTGACCAATCAACTCACAGTGACATGGCAGATTTTGTTGAACTCCAAGAAGGTGGTGTTGGAGCCCTCGTACCAGCTTTGCTTGGTTTCGGCAATGAAGACCTTGACGCAGGTGACGAATTCGCCCATCTTCAACGTGTCGATTGGTCCTACGAAACATTTGATCGAGGTTGCTGGGTGAGCAATGAAGATGATGGCAATGACGCCGATAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAACTGTTTCAAAACAAGAAGA</pcr_primer_p1>
		<pcr_primer_p2>AAATCAGAACTATTGAGCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTT</canonical_amplicon>
		<polymorphic_amplicon>AGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATRATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27628</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>39030</contig_pos>
        <strand>+</strand>
        <context>TTTATTAACG[A/G]GAAATTTAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACG</left_flank>
        <right_flank>GAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTATATAACATCTGCTCGGTAGCCAAGCTATGCGTGTATACCGATCACTATACAAGTCAGAATGAATACACTAGCCCCAAAATAAAACTCGAAAATCTGTTTCTATGAAGAAACTTGTTTCCTTTACACTGCAGAGAGCATGGACTTCGCCCGAGTGTTTCAATCACGAGAAGAGAGGAGCATTCATCTTGACTGACACATGCCCACTCATTAGAACTCTAGTTCTGTCTTTTTTCATCTCAGAAGAAAAAATGATGACCTAAAAATGTGATGAACTTCAAAACCGAGAAAGCAAGACTCTGAATTGAGAAGAAGAGAGTGAGCCAACATCCAGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTTGCTGGTCGACAGGCATTTCAGAAGCAGTCATGGGTTTGGCAGTAGTGGTGTGGGCGTCTGGAGAGTTGGATTCAAGTTCAAAGTTGCACAAATGTTTGTTGTCGCAGAAGCATCTCTCCACCACTTTCTTGTATTCCTTTTCGTACTGAAATAAACAAAATTTCTAATTGATCGCCGAAGTGACCAATCAACTCACAGTGACATGGCAGATTTTGTTGAACTCCAAGAAGGTGGTGTTGGAGCCCTCGTACCAGCTTTGCTTGGTTTCGGCAATGAAGACCTTGACGCAGGTGACGAATTCGCCCATCTTCAACGTGTCGATTGGTCCTACGAAACATTTGATCGAGGTTGCTGGGTGAGCAATGAAGATGATGGCAATGACGCCGATAATCCAAGAAGGGTGCATGTTGCCTGCAAAATA</canonical>
            <polymorphic>GTTATATAACATCTGCTCGGTAGCCAAGCTATGCGTGTATACCGATCACTATACAAGTCAGAATGAATACACTAGCCCCAAAATAAAACTCGAAAATCTGTTTCTATGAAGAAACTTGTTTCCTTTACACTGCAGAGAGCATGGACTTCGCCCGAGTGTTTCAATCACGAGAAGAGAGGAGCATTCATCTTGACTGACACATGCCCACTCATTAGAACTCTAGTTCTGTCTTTTTTCATCTCAGAAGAAAAAATGATGACCTAAAAATGTGATGAACTTCAAAACCGAGAAAGCAAGACTCTGAATTGAGAAGAAGAGAGTGAGCCAACATCCAGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGRGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTTGCTGGTCGACAGGCATTTCAGAAGCAGTCATGGGTTTGGCAGTAGTGGTGTGGGCGTCTGGAGAGTTGGATTCAAGTTCAAAGTTGCACAAATGTTTGTTGTCGCAGAAGCATCTCTCCACCACTTTCTTGTATTCCTTTTCGTACTGAAATAAACAAAATTTCTAATTGATCGCCGAAGTGACCAATCAACTCACAGTGACATGGCAGATTTTGTTGAACTCCAAGAAGGTGGTGTTGGAGCCCTCGTACCAGCTTTGCTTGGTTTCGGCAATGAAGACCTTGACGCAGGTGACGAATTCGCCCATCTTCAACGTGTCGATTGGTCCTACGAAACATTTGATCGAGGTTGCTGGGTGAGCAATGAAGATGATGGCAATGACGCCGATAATCCAAGAAGGGTGCATGTTGCCTGCAAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAACTGTTTCAAAACAAGAAGA</pcr_primer_p1>
		<pcr_primer_p2>AAATCAGAACTATTGAGCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTT</canonical_amplicon>
		<polymorphic_amplicon>AGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGRGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27629</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>39065</contig_pos>
        <strand>+</strand>
        <context>ACCGGGGCAG[A/C]TGCTCTTCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAG</left_flank>
        <right_flank>TGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTTGCTGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTATACCGATCACTATACAAGTCAGAATGAATACACTAGCCCCAAAATAAAACTCGAAAATCTGTTTCTATGAAGAAACTTGTTTCCTTTACACTGCAGAGAGCATGGACTTCGCCCGAGTGTTTCAATCACGAGAAGAGAGGAGCATTCATCTTGACTGACACATGCCCACTCATTAGAACTCTAGTTCTGTCTTTTTTCATCTCAGAAGAAAAAATGATGACCTAAAAATGTGATGAACTTCAAAACCGAGAAAGCAAGACTCTGAATTGAGAAGAAGAGAGTGAGCCAACATCCAGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTTGCTGGTCGACAGGCATTTCAGAAGCAGTCATGGGTTTGGCAGTAGTGGTGTGGGCGTCTGGAGAGTTGGATTCAAGTTCAAAGTTGCACAAATGTTTGTTGTCGCAGAAGCATCTCTCCACCACTTTCTTGTATTCCTTTTCGTACTGAAATAAACAAAATTTCTAATTGATCGCCGAAGTGACCAATCAACTCACAGTGACATGGCAGATTTTGTTGAACTCCAAGAAGGTGGTGTTGGAGCCCTCGTACCAGCTTTGCTTGGTTTCGGCAATGAAGACCTTGACGCAGGTGACGAATTCGCCCATCTTCAACGTGTCGATTGGTCCTACGAAACATTTGATCGAGGTTGCTGGGTGAGCAATGAAGATGATGGCAATGACGCCGATAATCCAAGAAGGGTGCATGTTGCCTGCAAAATAACATTTTCAAAATGATTGTAGTTTGGGGGAAAGAA</canonical>
            <polymorphic>TGTATACCGATCACTATACAAGTCAGAATGAATACACTAGCCCCAAAATAAAACTCGAAAATCTGTTTCTATGAAGAAACTTGTTTCCTTTACACTGCAGAGAGCATGGACTTCGCCCGAGTGTTTCAATCACGAGAAGAGAGGAGCATTCATCTTGACTGACACATGCCCACTCATTAGAACTCTAGTTCTGTCTTTTTTCATCTCAGAAGAAAAAATGATGACCTAAAAATGTGATGAACTTCAAAACCGAGAAAGCAAGACTCTGAATTGAGAAGAAGAGAGTGAGCCAACATCCAGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGMTGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTTGCTGGTCGACAGGCATTTCAGAAGCAGTCATGGGTTTGGCAGTAGTGGTGTGGGCGTCTGGAGAGTTGGATTCAAGTTCAAAGTTGCACAAATGTTTGTTGTCGCAGAAGCATCTCTCCACCACTTTCTTGTATTCCTTTTCGTACTGAAATAAACAAAATTTCTAATTGATCGCCGAAGTGACCAATCAACTCACAGTGACATGGCAGATTTTGTTGAACTCCAAGAAGGTGGTGTTGGAGCCCTCGTACCAGCTTTGCTTGGTTTCGGCAATGAAGACCTTGACGCAGGTGACGAATTCGCCCATCTTCAACGTGTCGATTGGTCCTACGAAACATTTGATCGAGGTTGCTGGGTGAGCAATGAAGATGATGGCAATGACGCCGATAATCCAAGAAGGGTGCATGTTGCCTGCAAAATAACATTTTCAAAATGATTGTAGTTTGGGGGAAAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACTGCTTAAATAACAGTAGCA</pcr_primer_p1>
		<pcr_primer_p2>TTGAATCCAACTCTCCAGAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTTGCTGGTCGACAGGCATTTCAGAAGCAGTCATGGGTTTGGCAGTAGTGGTGTGGGCGTCTGGAGAGTTGGATTCAA</canonical_amplicon>
		<polymorphic_amplicon>TGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGMTGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTTGCTGGTCGACAGGCATTTCAGAAGCAGTCATGGGTTTGGCAGTAGTGGTGTGGGCGTCTGGAGAGTTGGATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27630</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>39131</contig_pos>
        <strand>+</strand>
        <context>GGCATTTCAG[A/G]AGCAGTCATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCAATTTTTTGCTCAATAGTTCTGATTTGCTGGTCGACAGGCATTTCAG</left_flank>
        <right_flank>AGCAGTCATGGGTTTGGCAGTAGTGGTGTGGGCGTCTGGAGAGTTGGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTATGAAGAAACTTGTTTCCTTTACACTGCAGAGAGCATGGACTTCGCCCGAGTGTTTCAATCACGAGAAGAGAGGAGCATTCATCTTGACTGACACATGCCCACTCATTAGAACTCTAGTTCTGTCTTTTTTCATCTCAGAAGAAAAAATGATGACCTAAAAATGTGATGAACTTCAAAACCGAGAAAGCAAGACTCTGAATTGAGAAGAAGAGAGTGAGCCAACATCCAGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTTGCTGGTCGACAGGCATTTCAGAAGCAGTCATGGGTTTGGCAGTAGTGGTGTGGGCGTCTGGAGAGTTGGATTCAAGTTCAAAGTTGCACAAATGTTTGTTGTCGCAGAAGCATCTCTCCACCACTTTCTTGTATTCCTTTTCGTACTGAAATAAACAAAATTTCTAATTGATCGCCGAAGTGACCAATCAACTCACAGTGACATGGCAGATTTTGTTGAACTCCAAGAAGGTGGTGTTGGAGCCCTCGTACCAGCTTTGCTTGGTTTCGGCAATGAAGACCTTGACGCAGGTGACGAATTCGCCCATCTTCAACGTGTCGATTGGTCCTACGAAACATTTGATCGAGGTTGCTGGGTGAGCAATGAAGATGATGGCAATGACGCCGATAATCCAAGAAGGGTGCATGTTGCCTGCAAAATAACATTTTCAAAATGATTGTAGTTTGGGGGAAAGAAGAAAACACGATCTTGAGCGAAGACAAACTTTGAGAATGATCACCTCCGGGAGTAGCCTAGGGGTGG</canonical>
            <polymorphic>TTCTATGAAGAAACTTGTTTCCTTTACACTGCAGAGAGCATGGACTTCGCCCGAGTGTTTCAATCACGAGAAGAGAGGAGCATTCATCTTGACTGACACATGCCCACTCATTAGAACTCTAGTTCTGTCTTTTTTCATCTCAGAAGAAAAAATGATGACCTAAAAATGTGATGAACTTCAAAACCGAGAAAGCAAGACTCTGAATTGAGAAGAAGAGAGTGAGCCAACATCCAGAACTGTTTCAAAACAAGAAGAAGAACGACGGAACGGACTTTGGAAAATCTGAATCAAAGAAACTATGCAGTATGACTGCTTAAATAACAGTAGCACCTGGAAAATCTGGAATTTTCGGAATGCGAAATAAACAATGATTGCTGATTGACAAATATTTATTAACGAGAAATTTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTTGCTGGTCGACAGGCATTTCAGRAGCAGTCATGGGTTTGGCAGTAGTGGTGTGGGCGTCTGGAGAGTTGGATTCAAGTTCAAAGTTGCACAAATGTTTGTTGTCGCAGAAGCATCTCTCCACCACTTTCTTGTATTCCTTTTCGTACTGAAATAAACAAAATTTCTAATTGATCGCCGAAGTGACCAATCAACTCACAGTGACATGGCAGATTTTGTTGAACTCCAAGAAGGTGGTGTTGGAGCCCTCGTACCAGCTTTGCTTGGTTTCGGCAATGAAGACCTTGACGCAGGTGACGAATTCGCCCATCTTCAACGTGTCGATTGGTCCTACGAAACATTTGATCGAGGTTGCTGGGTGAGCAATGAAGATGATGGCAATGACGCCGATAATCCAAGAAGGGTGCATGTTGCCTGCAAAATAACATTTTCAAAATGATTGTAGTTTGGGGGAAAGAAGAAAACACGATCTTGAGCGAAGACAAACTTTGAGAATGATCACCTCCGGGAGTAGCCTAGGGGTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>502 142 122 83 67 59 25</canonical_bands>
                <polymorphic_bands>527 142 122 83 67 59</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAATCACGTCCAGTTACGAC</pcr_primer_p1>
		<pcr_primer_p2>GCGATCAATTAGAAATTTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTTGCTGGTCGACAGGCATTTCAGAAGCAGTCATGGGTTTGGCAGTAGTGGTGTGGGCGTCTGGAGAGTTGGATTCAAGTTCAAAGTTGCACAAATGTTTGTTGTCGCAGAAGCATCTCTCCACCACTTTCTTGTATTCCTTTTCGTACTGAAATAAACAAAATTTCTAATTGATCGC</canonical_amplicon>
		<polymorphic_amplicon>TTAATCACGTCCAGTTACGACCGGGGCAGATGCTCTTCTAAAATCGTCAATTTTTTGCTCAATAGTTCTGATTTGCTGGTCGACAGGCATTTCAGRAGCAGTCATGGGTTTGGCAGTAGTGGTGTGGGCGTCTGGAGAGTTGGATTCAAGTTCAAAGTTGCACAAATGTTTGTTGTCGCAGAAGCATCTCTCCACCACTTTCTTGTATTCCTTTTCGTACTGAAATAAACAAAATTTCTAATTGATCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27631</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>59697</contig_pos>
        <strand></strand>
        <context>ttcaaagttt[C/T]caggctagct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACAGCTGAAAAATTAAGAATTTTCAAAAAATTCTGTGAGTTCAAAGTTT</left_flank>
        <right_flank>CAGGCTAGCTCTGTTTTACAATCTCCAAAATTTTCGAAGGGAACTGAAAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGAATCCATAAATTGAGGGAACGTTGGAGACATGTTGTTGATAATGATGGACAATATAATTAATTATTCGGTTATTTTTTCTTTGAGAAATAAACTATTGAAAAAGTGACAAAGACTTTCCCGCCAACCTAATAAATCCAAAACTTGTTTATTGTGATGTCACAATACATGGTATCCCTCTTATTGCAATTTTGCTGCACAAACAGGAATCACAACAAGTGACAAGATGATGATAGAAACTTGTCAGAAGAAATTTTTTTCAGGTATCATAGTTCAAAATCATTGAAATTAGGTCATATTTTATCAGAAGTTTGTTGATGCCAAAAAAAGGAAGTTCGCTTTCTGGGATCTCAATATTGAATTTGGCATAAAATAACGGTCAATACTGAAAACAGCGGAGAATTTTGTACTAAAAATTTTAAAAAATAGGTCTTTCAAAAATGGGCATACAGCTGAAAAATTAAGAATTTTCAAAAAATTCTGTGAGTTCAAAGTTTCCAGGCTAGCTCTGTTTTACAATCTCCAAAATTTTCGAAGGGAACTGAAACATCACAACCGGGCTCCATTTTTGAAAATTGTCAAAGAAAAATATGTTTGTTCACATTTCATTGACTGGTACTGTATAATTTATTGATTTTTCTTTAATGCTATGATAAATTTATTTCTTAGGAACTAGTGTAAAAATGTCTATTCCCATACGTACGACTTCGTTGCGTTTTCCTGTTCGAAATATCTCATTAAAAACAAAAACTAGTGTAATTCCCTAAATTCCTTCAGCTTTCTTCACCCAACTTTTGCTAGGAACACGACTCGCTGTTCTTAAACTTTCTCTCTCATTTTTTTTGTTATTACTCTCTTCCCAAAATCACACGATTCACCAATCTCTGAACCATGTGGTGACTGAAGATTTATTCCGGGCCGACGCGGGATCTAATAGAGATTCAGAAGGCTAGAGGAAGAGGAATCGGGTGCCCGGCTAGAGTTGTTTGTTGTCTTCT</canonical>
            <polymorphic>ATGGAATCCATAAATTGAGGGAACGTTGGAGACATGTTGTTGATAATGATGGACAATATAATTAATTATTCGGTTATTTTTTCTTTGAGAAATAAACTATTGAAAAAGTGACAAAGACTTTCCCGCCAACCTAATAAATCCAAAACTTGTTTATTGTGATGTCACAATACATGGTATCCCTCTTATTGCAATTTTGCTGCACAAACAGGAATCACAACAAGTGACAAGATGATGATAGAAACTTGTCAGAAGAAATTTTTTTCAGGTATCATAGTTCAAAATCATTGAAATTAGGTCATATTTTATCAGAAGTTTGTTGATGCCAAAAAAAGGAAGTTCGCTTTCTGGGATCTCAATATTGAATTTGGCATAAAATAACGGTCAATACTGAAAACAGCGGAGAATTTTGTACTAAAAATTTTAAAAAATAGGTCTTTCAAAAATGGGCATACAGCTGAAAAATTAAGAATTTTCAAAAAATTCTGTGAGTTCAAAGTTTYCAGGCTAGCTCTGTTTTACAATCTCCAAAATTTTCGAAGGGAACTGAAACATCACAACCGGGCTCCATTTTTGAAAATTGTCAAAGAAAAATATGTTTGTTCACATTTCATTGACTGGTACTGTATAATTTATTGATTTTTCTTTAATGCTATGATAAATTTATTTCTTAGGAACTAGTGTAAAAATGTCTATTCCCATACGTACGACTTCGTTGCGTTTTCCTGTTCGAAATATCTCATTAAAAACAAAAACTAGTGTAATTCCCTAAATTCCTTCAGCTTTCTTCACCCAACTTTTGCTAGGAACACGACTCGCTGTTCTTAAACTTTCTCTCTCATTTTTTTTGTTATTACTCTCTTCCCAAAATCACACGATTCACCAATCTCTGAACCATGTGGTGACTGAAGATTTATTCCGGGCCGACGCGGGATCTAATAGAGATTCAGAAGGCTAGAGGAAGAGGAATCGGGTGCCCGGCTAGAGTTGTTTGTTGTCTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>501 358 58 58 25</canonical_bands>
                <polymorphic_bands>559 358 58 25</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACTGAAAACAGCGGAGAA</pcr_primer_p1>
		<pcr_primer_p2>CGTATGGGAATAGACATTTTTAC</pcr_primer_p2>
		<pcr_amplicon_size>318</pcr_amplicon_size>
		<canonical_amplicon>ATACTGAAAACAGCGGAGAATTTTGTACTAAAAATTTTAAAAAATAGGTCTTTCAAAAATGGGCATACAGCTGAAAAATTAAGAATTTTCAAAAAATTCTGTGAGTTCAAAGTTTCCAGGCTAGCTCTGTTTTACAATCTCCAAAATTTTCGAAGGGAACTGAAACATCACAACCGGGCTCCATTTTTGAAAATTGTCAAAGAAAAATATGTTTGTTCACATTTCATTGACTGGTACTGTATAATTTATTGATTTTTCTTTAATGCTATGATAAATTTATTTCTTAGGAACTAGTGTAAAAATGTCTATTCCCATACG</canonical_amplicon>
		<polymorphic_amplicon>ATACTGAAAACAGCGGAGAATTTTGTACTAAAAATTTTAAAAAATAGGTCTTTCAAAAATGGGCATACAGCTGAAAAATTAAGAATTTTCAAAAAATTCTGTGAGTTCAAAGTTTYCAGGCTAGCTCTGTTTTACAATCTCCAAAATTTTCGAAGGGAACTGAAACATCACAACCGGGCTCCATTTTTGAAAATTGTCAAAGAAAAATATGTTTGTTCACATTTCATTGACTGGTACTGTATAATTTATTGATTTTTCTTTAATGCTATGATAAATTTATTTCTTAGGAACTAGTGTAAAAATGTCTATTCCCATACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27632</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>59832</contig_pos>
        <strand></strand>
        <context>ATAATTTATT[G/C]ATTTTTCTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AGAAAAATATGTTTGTTCACATTTCATTGACTGGTACTGTATAATTTATT</left_flank>
        <right_flank>ATTTTTCTTTAATGCTATGATAAATTTATTTCTTAGGAACTAGTGTAAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCCAAAACTTGTTTATTGTGATGTCACAATACATGGTATCCCTCTTATTGCAATTTTGCTGCACAAACAGGAATCACAACAAGTGACAAGATGATGATAGAAACTTGTCAGAAGAAATTTTTTTCAGGTATCATAGTTCAAAATCATTGAAATTAGGTCATATTTTATCAGAAGTTTGTTGATGCCAAAAAAAGGAAGTTCGCTTTCTGGGATCTCAATATTGAATTTGGCATAAAATAACGGTCAATACTGAAAACAGCGGAGAATTTTGTACTAAAAATTTTAAAAAATAGGTCTTTCAAAAATGGGCATACAGCTGAAAAATTAAGAATTTTCAAAAAATTCTGTGAGTTCAAAGTTTCCAGGCTAGCTCTGTTTTACAATCTCCAAAATTTTCGAAGGGAACTGAAACATCACAACCGGGCTCCATTTTTGAAAATTGTCAAAGAAAAATATGTTTGTTCACATTTCATTGACTGGTACTGTATAATTTATTGATTTTTCTTTAATGCTATGATAAATTTATTTCTTAGGAACTAGTGTAAAAATGTCTATTCCCATACGTACGACTTCGTTGCGTTTTCCTGTTCGAAATATCTCATTAAAAACAAAAACTAGTGTAATTCCCTAAATTCCTTCAGCTTTCTTCACCCAACTTTTGCTAGGAACACGACTCGCTGTTCTTAAACTTTCTCTCTCATTTTTTTTGTTATTACTCTCTTCCCAAAATCACACGATTCACCAATCTCTGAACCATGTGGTGACTGAAGATTTATTCCGGGCCGACGCGGGATCTAATAGAGATTCAGAAGGCTAGAGGAAGAGGAATCGGGTGCCCGGCTAGAGTTGTTTGTTGTCTTCTGCTTCTTCTCTTTTTTTTTCTTCAGTTTCTTCTTTCAAAGAAACAGAAACGAAAGCAGTAATTTGTGCTCTTTTTGCCATCGGCCTATCCGATTGCTTCTTCATGAGGCGCGCTCGGAGGAGATGCTCATCGGCA</canonical>
            <polymorphic>AAATCCAAAACTTGTTTATTGTGATGTCACAATACATGGTATCCCTCTTATTGCAATTTTGCTGCACAAACAGGAATCACAACAAGTGACAAGATGATGATAGAAACTTGTCAGAAGAAATTTTTTTCAGGTATCATAGTTCAAAATCATTGAAATTAGGTCATATTTTATCAGAAGTTTGTTGATGCCAAAAAAAGGAAGTTCGCTTTCTGGGATCTCAATATTGAATTTGGCATAAAATAACGGTCAATACTGAAAACAGCGGAGAATTTTGTACTAAAAATTTTAAAAAATAGGTCTTTCAAAAATGGGCATACAGCTGAAAAATTAAGAATTTTCAAAAAATTCTGTGAGTTCAAAGTTTCCAGGCTAGCTCTGTTTTACAATCTCCAAAATTTTCGAAGGGAACTGAAACATCACAACCGGGCTCCATTTTTGAAAATTGTCAAAGAAAAATATGTTTGTTCACATTTCATTGACTGGTACTGTATAATTTATTSATTTTTCTTTAATGCTATGATAAATTTATTTCTTAGGAACTAGTGTAAAAATGTCTATTCCCATACGTACGACTTCGTTGCGTTTTCCTGTTCGAAATATCTCATTAAAAACAAAAACTAGTGTAATTCCCTAAATTCCTTCAGCTTTCTTCACCCAACTTTTGCTAGGAACACGACTCGCTGTTCTTAAACTTTCTCTCTCATTTTTTTTGTTATTACTCTCTTCCCAAAATCACACGATTCACCAATCTCTGAACCATGTGGTGACTGAAGATTTATTCCGGGCCGACGCGGGATCTAATAGAGATTCAGAAGGCTAGAGGAAGAGGAATCGGGTGCCCGGCTAGAGTTGTTTGTTGTCTTCTGCTTCTTCTCTTTTTTTTTCTTCAGTTTCTTCTTTCAAAGAAACAGAAACGAAAGCAGTAATTTGTGCTCTTTTTGCCATCGGCCTATCCGATTGCTTCTTCATGAGGCGCGCTCGGAGGAGATGCTCATCGGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACTGAAAACAGCGGAGAA</pcr_primer_p1>
		<pcr_primer_p2>CGTATGGGAATAGACATTTTTAC</pcr_primer_p2>
		<pcr_amplicon_size>318</pcr_amplicon_size>
		<canonical_amplicon>ATACTGAAAACAGCGGAGAATTTTGTACTAAAAATTTTAAAAAATAGGTCTTTCAAAAATGGGCATACAGCTGAAAAATTAAGAATTTTCAAAAAATTCTGTGAGTTCAAAGTTTCCAGGCTAGCTCTGTTTTACAATCTCCAAAATTTTCGAAGGGAACTGAAACATCACAACCGGGCTCCATTTTTGAAAATTGTCAAAGAAAAATATGTTTGTTCACATTTCATTGACTGGTACTGTATAATTTATTGATTTTTCTTTAATGCTATGATAAATTTATTTCTTAGGAACTAGTGTAAAAATGTCTATTCCCATACG</canonical_amplicon>
		<polymorphic_amplicon>ATACTGAAAACAGCGGAGAATTTTGTACTAAAAATTTTAAAAAATAGGTCTTTCAAAAATGGGCATACAGCTGAAAAATTAAGAATTTTCAAAAAATTCTGTGAGTTCAAAGTTTCCAGGCTAGCTCTGTTTTACAATCTCCAAAATTTTCGAAGGGAACTGAAACATCACAACCGGGCTCCATTTTTGAAAATTGTCAAAGAAAAATATGTTTGTTCACATTTCATTGACTGGTACTGTATAATTTATTSATTTTTCTTTAATGCTATGATAAATTTATTTCTTAGGAACTAGTGTAAAAATGTCTATTCCCATACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27633</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>100715</contig_pos>
        <strand>+</strand>
        <context>AAAAAGAAAA[A/G]TCACCATGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAGAAAAATTGAAAACTTTATCTTTTGAAATATCAAAAGAAAAAGAAAA</left_flank>
        <right_flank>TCACCATGGGCAAGAAGAGATAGAATATCTTTGCTCTCTACCACAAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGAACATGAGTCAGCTCAAGAGAAAGTTTAAACAAAATGTGTTGGTGAAGACGCGAAGCTGTCACAAAAAAGAGGTGAAGTAGTGCTTCACGTGGAAGAGAGTATAGAATTGAATACGAAGAATAAGATAATGCCAATCTCGGTAAGTATATTAATTGACAGTTTTCTGTCTTCATTAGCGTGGTGTGACATTGGTTAATGTTCTTTTTTCTTCATGACCGTGATAGGCATGCAAAAACGCAAAACGCTAAACAGTTTGCTGCCCTTTTCGAAGATGTGTCCCCATTAATTTTTCTCACCTTGGTCACACGCAACAAAAAGACAACAAGTAGAATAAAAGTACACAACAGAAAAGATAGCGAGTCACCTACTGAGAACAGCGTTTTTGTTGATTTTATACTGCGGGAAATATTGGGGGGAAAGGTATTCTCTTATTAATTGGAAAATACAAGAAAAATTGAAAACTTTATCTTTTGAAATATCAAAAGAAAAAGAAAAATCACCATGGGCAAGAAGAGATAGAATATCTTTGCTCTCTACCACAAAAATCACTTTTTTTGCTTGATTCTCAATGTTATCTTTCCGGTTAGTCTTTTTAAAATTACGGTAACAAAAGTGTCAATATGCATTTTTTTTCCTTTATTGCATCTCAATTCGGCGAAGTTACAGTACCAGCCAATAATATATGCAAAAGCGCATTTTTCAGTTGATTTTGACTTTTTTCAGGTGTCAGGAACACTACTGTCAAGTGTCCGATCACTTTGAAAATTTTGCAAGTATAAAAAAGACTCGATTAGAAATTTCACATTTACCTATTTTTCGAAAATTCCTTGTTTTTCAGATATTTGACGATTTATGAAGAACAACCCTTTTTCTCCTGTTTTTGAACTTTAAGCGTGCAAACAGGGAAGTGTCTTCAGAATTCGGAAATATCTGAAAAACTAGGAATTTTCAAAAATTCTGTAAATCTGAAATTTTCAATTTAGGTCTGTTGTATAA</canonical>
            <polymorphic>GGGAACATGAGTCAGCTCAAGAGAAAGTTTAAACAAAATGTGTTGGTGAAGACGCGAAGCTGTCACAAAAAAGAGGTGAAGTAGTGCTTCACGTGGAAGAGAGTATAGAATTGAATACGAAGAATAAGATAATGCCAATCTCGGTAAGTATATTAATTGACAGTTTTCTGTCTTCATTAGCGTGGTGTGACATTGGTTAATGTTCTTTTTTCTTCATGACCGTGATAGGCATGCAAAAACGCAAAACGCTAAACAGTTTGCTGCCCTTTTCGAAGATGTGTCCCCATTAATTTTTCTCACCTTGGTCACACGCAACAAAAAGACAACAAGTAGAATAAAAGTACACAACAGAAAAGATAGCGAGTCACCTACTGAGAACAGCGTTTTTGTTGATTTTATACTGCGGGAAATATTGGGGGGAAAGGTATTCTCTTATTAATTGGAAAATACAAGAAAAATTGAAAACTTTATCTTTTGAAATATCAAAAGAAAAAGAAAARTCACCATGGGCAAGAAGAGATAGAATATCTTTGCTCTCTACCACAAAAATCACTTTTTTTGCTTGATTCTCAATGTTATCTTTCCGGTTAGTCTTTTTAAAATTACGGTAACAAAAGTGTCAATATGCATTTTTTTTCCTTTATTGCATCTCAATTCGGCGAAGTTACAGTACCAGCCAATAATATATGCAAAAGCGCATTTTTCAGTTGATTTTGACTTTTTTCAGGTGTCAGGAACACTACTGTCAAGTGTCCGATCACTTTGAAAATTTTGCAAGTATAAAAAAGACTCGATTAGAAATTTCACATTTACCTATTTTTCGAAAATTCCTTGTTTTTCAGATATTTGACGATTTATGAAGAACAACCCTTTTTCTCCTGTTTTTGAACTTTAAGCGTGCAAACAGGGAAGTGTCTTCAGAATTCGGAAATATCTGAAAAACTAGGAATTTTCAAAAATTCTGTAAATCTGAAATTTTCAATTTAGGTCTGTTGTATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAGATAGCGAGTCACCTACT</pcr_primer_p1>
		<pcr_primer_p2>TTAAAAAGACTAACCGGAAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAAGATAGCGAGTCACCTACTGAGAACAGCGTTTTTGTTGATTTTATACTGCGGGAAATATTGGGGGGAAAGGTATTCTCTTATTAATTGGAAAATACAAGAAAAATTGAAAACTTTATCTTTTGAAATATCAAAAGAAAAAGAAAAATCACCATGGGCAAGAAGAGATAGAATATCTTTGCTCTCTACCACAAAAATCACTTTTTTTGCTTGATTCTCAATGTTATCTTTCCGGTTAGTCTTTTTAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAGATAGCGAGTCACCTACTGAGAACAGCGTTTTTGTTGATTTTATACTGCGGGAAATATTGGGGGGAAAGGTATTCTCTTATTAATTGGAAAATACAAGAAAAATTGAAAACTTTATCTTTTGAAATATCAAAAGAAAAAGAAAARTCACCATGGGCAAGAAGAGATAGAATATCTTTGCTCTCTACCACAAAAATCACTTTTTTTGCTTGATTCTCAATGTTATCTTTCCGGTTAGTCTTTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27634</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>100892</contig_pos>
        <strand></strand>
        <context>ACagtaccag[C/T]caataatata</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCATTTTTTTTCCTTTATTGCATCTCAATTCGGCGAAGTTACAGTACCAG</left_flank>
        <right_flank>CAATAATATATGCAAAAGCGCATTTTTCAGTTGATTTTGACTTTTTTCAG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGCGTGGTGTGACATTGGTTAATGTTCTTTTTTCTTCATGACCGTGATAGGCATGCAAAAACGCAAAACGCTAAACAGTTTGCTGCCCTTTTCGAAGATGTGTCCCCATTAATTTTTCTCACCTTGGTCACACGCAACAAAAAGACAACAAGTAGAATAAAAGTACACAACAGAAAAGATAGCGAGTCACCTACTGAGAACAGCGTTTTTGTTGATTTTATACTGCGGGAAATATTGGGGGGAAAGGTATTCTCTTATTAATTGGAAAATACAAGAAAAATTGAAAACTTTATCTTTTGAAATATCAAAAGAAAAAGAAAAATCACCATGGGCAAGAAGAGATAGAATATCTTTGCTCTCTACCACAAAAATCACTTTTTTTGCTTGATTCTCAATGTTATCTTTCCGGTTAGTCTTTTTAAAATTACGGTAACAAAAGTGTCAATATGCATTTTTTTTCCTTTATTGCATCTCAATTCGGCGAAGTTACAGTACCAGCCAATAATATATGCAAAAGCGCATTTTTCAGTTGATTTTGACTTTTTTCAGGTGTCAGGAACACTACTGTCAAGTGTCCGATCACTTTGAAAATTTTGCAAGTATAAAAAAGACTCGATTAGAAATTTCACATTTACCTATTTTTCGAAAATTCCTTGTTTTTCAGATATTTGACGATTTATGAAGAACAACCCTTTTTCTCCTGTTTTTGAACTTTAAGCGTGCAAACAGGGAAGTGTCTTCAGAATTCGGAAATATCTGAAAAACTAGGAATTTTCAAAAATTCTGTAAATCTGAAATTTTCAATTTAGGTCTGTTGTATAATCTCTAAATCTTTCAAAATGATCGGACCCTTGACAGCCAAGGTTCAGACTCTGGAAAATGGTCTAAATCAACTGAAAACACGTTTTTGTATATCTTTTTGACCGGTACTGTACATACTTAAAAAGCGCTAAACTCGGAGGAATAGGCTTTGCTTTCCAAAAACTGTAATTGTGCAAG</canonical>
            <polymorphic>TAGCGTGGTGTGACATTGGTTAATGTTCTTTTTTCTTCATGACCGTGATAGGCATGCAAAAACGCAAAACGCTAAACAGTTTGCTGCCCTTTTCGAAGATGTGTCCCCATTAATTTTTCTCACCTTGGTCACACGCAACAAAAAGACAACAAGTAGAATAAAAGTACACAACAGAAAAGATAGCGAGTCACCTACTGAGAACAGCGTTTTTGTTGATTTTATACTGCGGGAAATATTGGGGGGAAAGGTATTCTCTTATTAATTGGAAAATACAAGAAAAATTGAAAACTTTATCTTTTGAAATATCAAAAGAAAAAGAAAAATCACCATGGGCAAGAAGAGATAGAATATCTTTGCTCTCTACCACAAAAATCACTTTTTTTGCTTGATTCTCAATGTTATCTTTCCGGTTAGTCTTTTTAAAATTACGGTAACAAAAGTGTCAATATGCATTTTTTTTCCTTTATTGCATCTCAATTCGGCGAAGTTACAGTACCAGYCAATAATATATGCAAAAGCGCATTTTTCAGTTGATTTTGACTTTTTTCAGGTGTCAGGAACACTACTGTCAAGTGTCCGATCACTTTGAAAATTTTGCAAGTATAAAAAAGACTCGATTAGAAATTTCACATTTACCTATTTTTCGAAAATTCCTTGTTTTTCAGATATTTGACGATTTATGAAGAACAACCCTTTTTCTCCTGTTTTTGAACTTTAAGCGTGCAAACAGGGAAGTGTCTTCAGAATTCGGAAATATCTGAAAAACTAGGAATTTTCAAAAATTCTGTAAATCTGAAATTTTCAATTTAGGTCTGTTGTATAATCTCTAAATCTTTCAAAATGATCGGACCCTTGACAGCCAAGGTTCAGACTCTGGAAAATGGTCTAAATCAACTGAAAACACGTTTTTGTATATCTTTTTGACCGGTACTGTACATACTTAAAAAGCGCTAAACTCGGAGGAATAGGCTTTGCTTTCCAAAAACTGTAATTGTGCAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>499 360 110 31</canonical_bands>
                <polymorphic_bands>859 110 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATCTTTCCGGTTAGTCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAGTTTAGCGCTTTTTAAGTATG</pcr_primer_p2>
		<pcr_amplicon_size>560</pcr_amplicon_size>
		<canonical_amplicon>TTATCTTTCCGGTTAGTCTTTTTAAAATTACGGTAACAAAAGTGTCAATATGCATTTTTTTTCCTTTATTGCATCTCAATTCGGCGAAGTTACAGTACCAGCCAATAATATATGCAAAAGCGCATTTTTCAGTTGATTTTGACTTTTTTCAGGTGTCAGGAACACTACTGTCAAGTGTCCGATCACTTTGAAAATTTTGCAAGTATAAAAAAGACTCGATTAGAAATTTCACATTTACCTATTTTTCGAAAATTCCTTGTTTTTCAGATATTTGACGATTTATGAAGAACAACCCTTTTTCTCCTGTTTTTGAACTTTAAGCGTGCAAACAGGGAAGTGTCTTCAGAATTCGGAAATATCTGAAAAACTAGGAATTTTCAAAAATTCTGTAAATCTGAAATTTTCAATTTAGGTCTGTTGTATAATCTCTAAATCTTTCAAAATGATCGGACCCTTGACAGCCAAGGTTCAGACTCTGGAAAATGGTCTAAATCAACTGAAAACACGTTTTTGTATATCTTTTTGACCGGTACTGTACATACTTAAAAAGCGCTAAACTC</canonical_amplicon>
		<polymorphic_amplicon>TTATCTTTCCGGTTAGTCTTTTTAAAATTACGGTAACAAAAGTGTCAATATGCATTTTTTTTCCTTTATTGCATCTCAATTCGGCGAAGTTACAGTACCAGYCAATAATATATGCAAAAGCGCATTTTTCAGTTGATTTTGACTTTTTTCAGGTGTCAGGAACACTACTGTCAAGTGTCCGATCACTTTGAAAATTTTGCAAGTATAAAAAAGACTCGATTAGAAATTTCACATTTACCTATTTTTCGAAAATTCCTTGTTTTTCAGATATTTGACGATTTATGAAGAACAACCCTTTTTCTCCTGTTTTTGAACTTTAAGCGTGCAAACAGGGAAGTGTCTTCAGAATTCGGAAATATCTGAAAAACTAGGAATTTTCAAAAATTCTGTAAATCTGAAATTTTCAATTTAGGTCTGTTGTATAATCTCTAAATCTTTCAAAATGATCGGACCCTTGACAGCCAAGGTTCAGACTCTGGAAAATGGTCTAAATCAACTGAAAACACGTTTTTGTATATCTTTTTGACCGGTACTGTACATACTTAAAAAGCGCTAAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27635</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>118004</contig_pos>
        <strand></strand>
        <context>acattctcta[A/T]aaaaattttc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATTTTCAGGCTGAAAATTAAACAAAATTACATATGCCAGACATTCTCTA</left_flank>
        <right_flank>AAAAATTTTCGAAGTTTCCTCGAAGATTTTTTTTCGGAATTTAAAAAAAT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGAGAGTCGGACCTTGTAATTGCGGAAGAATAGGATGTTGCTCACGTAATATGCTCAAGGAGAAGAAGAGAAGGGATACCAGAAAAAGAAAACGACAGGAAATAGCTTTCAACTCTGAAAGTTTGAGATGTTAATTTCGCGCTGTTGCTAGTGAACAAAATCACCTGTCATTGAATAAAGTCCAGAGAAGTAGTTTTTTTTCGACGCGTGTAGTTCTGCTACAATTTTTATAGAACTATGGACAGACCACAATGTGGAAATATTAGATGTGTCTTGATTCTTGTATTTCTTACAGCTTGCATTTAGACAAATTTATTTAAGTCTGAAGTTTTCCGATTTTTTACAGTAATATCATATGAAACTAGTTCATTTTAGGAAAAACATAAAACAGCGATTTTCAAACACGATTTTCTCAAGTTCTAGAACGTTATAAAACATGAACTTTGTATTTTCAGGCTGAAAATTAAACAAAATTACATATGCCAGACATTCTCTAAAAAAATTTTCGAAGTTTCCTCGAAGATTTTTTTTCGGAATTTAAAAAAATCATTTGAAAATATTTTGAATTTGAAATTTCGCTCAGTATAACGAATCAGTTTTCATGTTTGAAACGTCCTAAAATTAAGAAAACCGTTTTTAAAAATTTTTGTATTTGTACTGAAAACAGATTTTTTAAATACTAAAACGACATAGCTTGGCTGAAACTGGCGAGCGGATTTCTGAATTTGAAGAAGTATCTAGAAAAGTTACTTTTGACCGATTTTGAAAGTTTAATTGTAATCCCGGTTTGCAATGTTCTCTTGTTGGGCCCGACTGATAGCAACGCAGTACTTCTATCGGTGTTCTCAAAAATTCTTATCCTCAAGCATTTCTTCTCACCGAAATTTTGAGATAATTGTTATTTACGTCTCCTATATTTAAGAAAAAACTGAAACAATTATTTATTTAAGAAAAAACTGAAATAACATCACAGATTTTCTATTTTGCTTCTGATTTA</canonical>
            <polymorphic>TTTGGAGAGTCGGACCTTGTAATTGCGGAAGAATAGGATGTTGCTCACGTAATATGCTCAAGGAGAAGAAGAGAAGGGATACCAGAAAAAGAAAACGACAGGAAATAGCTTTCAACTCTGAAAGTTTGAGATGTTAATTTCGCGCTGTTGCTAGTGAACAAAATCACCTGTCATTGAATAAAGTCCAGAGAAGTAGTTTTTTTTCGACGCGTGTAGTTCTGCTACAATTTTTATAGAACTATGGACAGACCACAATGTGGAAATATTAGATGTGTCTTGATTCTTGTATTTCTTACAGCTTGCATTTAGACAAATTTATTTAAGTCTGAAGTTTTCCGATTTTTTACAGTAATATCATATGAAACTAGTTCATTTTAGGAAAAACATAAAACAGCGATTTTCAAACACGATTTTCTCAAGTTCTAGAACGTTATAAAACATGAACTTTGTATTTTCAGGCTGAAAATTAAACAAAATTACATATGCCAGACATTCTCTAWAAAAATTTTCGAAGTTTCCTCGAAGATTTTTTTTCGGAATTTAAAAAAATCATTTGAAAATATTTTGAATTTGAAATTTCGCTCAGTATAACGAATCAGTTTTCATGTTTGAAACGTCCTAAAATTAAGAAAACCGTTTTTAAAAATTTTTGTATTTGTACTGAAAACAGATTTTTTAAATACTAAAACGACATAGCTTGGCTGAAACTGGCGAGCGGATTTCTGAATTTGAAGAAGTATCTAGAAAAGTTACTTTTGACCGATTTTGAAAGTTTAATTGTAATCCCGGTTTGCAATGTTCTCTTGTTGGGCCCGACTGATAGCAACGCAGTACTTCTATCGGTGTTCTCAAAAATTCTTATCCTCAAGCATTTCTTCTCACCGAAATTTTGAGATAATTGTTATTTACGTCTCCTATATTTAAGAAAAAACTGAAACAATTATTTATTTAAGAAAAAACTGAAATAACATCACAGATTTTCTATTTTGCTTCTGATTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTAGTTCATTTTAGGAAAAACA</pcr_primer_p1>
		<pcr_primer_p2>CAGTTTCAGCCAAGCTATGT</pcr_primer_p2>
		<pcr_amplicon_size>349</pcr_amplicon_size>
		<canonical_amplicon>AAACTAGTTCATTTTAGGAAAAACATAAAACAGCGATTTTCAAACACGATTTTCTCAAGTTCTAGAACGTTATAAAACATGAACTTTGTATTTTCAGGCTGAAAATTAAACAAAATTACATATGCCAGACATTCTCTAAAAAAATTTTCGAAGTTTCCTCGAAGATTTTTTTTCGGAATTTAAAAAAATCATTTGAAAATATTTTGAATTTGAAATTTCGCTCAGTATAACGAATCAGTTTTCATGTTTGAAACGTCCTAAAATTAAGAAAACCGTTTTTAAAAATTTTTGTATTTGTACTGAAAACAGATTTTTTAAATACTAAAACGACATAGCTTGGCTGAAACTG</canonical_amplicon>
		<polymorphic_amplicon>AAACTAGTTCATTTTAGGAAAAACATAAAACAGCGATTTTCAAACACGATTTTCTCAAGTTCTAGAACGTTATAAAACATGAACTTTGTATTTTCAGGCTGAAAATTAAACAAAATTACATATGCCAGACATTCTCTAWAAAAATTTTCGAAGTTTCCTCGAAGATTTTTTTTCGGAATTTAAAAAAATCATTTGAAAATATTTTGAATTTGAAATTTCGCTCAGTATAACGAATCAGTTTTCATGTTTGAAACGTCCTAAAATTAAGAAAACCGTTTTTAAAAATTTTTGTATTTGTACTGAAAACAGATTTTTTAAATACTAAAACGACATAGCTTGGCTGAAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27636</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>131488</contig_pos>
        <strand>+</strand>
        <context>TATGTTGYAA[A/G]AAAATGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTAAGTTCAGGGACTTCAGACAAGATACTGCAACAAAATTATGTTGCAA</left_flank>
        <right_flank>AAAATGAAAAATAACTGAAAAACAACAGTTTTACAAAATAAAAGTGTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTATTTCTTTTATTTTGATTTTGGTGCCAGGCAGAAAACATTATTGAAAACGTCTCGACGCCCACTTTCAATAAATATAATGGATTCTGGAGGCTAAAAAAGTTTTAGGGGGGGGGGGGGGCAAAAAGTTCATACCATCGAATCCTGCAGAAAAATATGAAAAATTAGCAAAATCTTTAAAAATCGATTTTGATGCAAAAAATATCAATTTCGTTCATTTCTGGAAATTTCCAAAAAGTTCTAGATTTGTTTGAATTCCAGCCAAAGCTGAAAAGTTTCAGAAATTGGGTGAGAACTGAGATTTTTTTTGATTTTGAAGGTTTTCTAAATTTTTGTAGTTTTATTCAATTTCTGGGTTAATCTACATAGTTTTCTACAAACTTTAATGCAAGAAAAATGGAAGTGAAACTAATTTAAGCGAACTTTGTGAAAAATTAAATTGTTAGGATTAAGTTCAGGGACTTCAGACAAGATACTGCAACAAAATTATGTTGCAAAAAAATGAAAAATAACTGAAAAACAACAGTTTTACAAAATAAAAGTGTCAAGAAGATTTCTATTTTAATATAATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCCAGACTGGAAACAGTGTGAAATTTCAGATATTGTGAAATAGAGATTTTTATGTTTTGAGTAAAATTTCGAAAAGTTTTGGAAAATATCTCGGAAAAAAATATTGCAAGTGACAAATAGAATTAAAACTATTTTTTTTCCTTCTAATGATAGGGTTTTACTGAATTCTGAGAAGTATACGAGAAGATTCACGAATTTTAGTAATATTTTATGAGATTCTCTTTTTTTCATTAGATTTCATTAGACTTCATGAGATTCTAATTTTGGAATTTCTGTTTGAATTTTTTTTGCAAAAATAAAATGCTGCTGCCAAAATAAAGTGTTTGATGATTTAAAAGTTATCAAATGGGAGGTCATTTTCGAAACCTCCTATCTTCTCCCGC</canonical>
            <polymorphic>TCCTATTTCTTTTATTTTGATTTTGGTGCCAGGCAGAAAACATTATTGAAAACGTCTCGACGCCCACTTTCAATAAATATAATGGATTCTGGAGGCTAAAAAAGTTTTAGGGGGGGGGGGGGGCAAAAAGTTCATACCATCGAATCCTGCAGAAAAATATGAAAAATTAGCAAAATCTTTAAAAATCGATTTTGATGCAAAAAATATCAATTTCGTTCATTTCTGGAAATTTCCAAAAAGTTCTAGATTTGTTTGAATTCCAGCCAAAGCTGAAAAGTTTCAGAAATTGGGTGAGAACTGAGATTTTTTTTGATTTTGAAGGTTTTCTAAATTTTTGTAGTTTTATTCAATTTCTGGGTTAATCTACATAGTTTTCTACAAACTTTAATGCAAGAAAAATGGAAGTGAAACTAATTTAAGCGAACTTTGTGAAAAATTAAATTGTTAGGATTAAGTTCAGGGACTTCAGACAAGATACTGCAACAAAATTATGTTGCAARAAAATGAAAAATAACTGAAAAACAACAGTTTTACAAAATAAAAGTGTCAAGAAGATTTCTATTTTAATATAATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCCAGACTGGAAACAGTGTGAAATTTCAGATATTGTGAAATAGAGATTTTTATGTTTTGAGTAAAATTTCGAAAAGTTTTGGAAAATATCTCGGAAAAAAATATTGCAAGTGACAAATAGAATTAAAACTATTTTTTTTCCTTCTAATGATAGGGTTTTACTGAATTCTGAGAAGTATACGAGAAGATTCACGAATTTTAGTAATATTTTATGAGATTCTCTTTTTTTCATTAGATTTCATTAGACTTCATGAGATTCTAATTTTGGAATTTCTGTTTGAATTTTTTTTGCAAAAATAAAATGCTGCTGCCAAAATAAAGTGTTTGATGATTTAAAAGTTATCAAATGGGAGGTCATTTTCGAAACCTCCTATCTTCTCCCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTAAGTTCAGGGACTTCAGA</pcr_primer_p1>
		<pcr_primer_p2>AAAACTTTTCGAAATTTTACTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATTAAGTTCAGGGACTTCAGACAAGATACTGCAACAAAATTATGTTGCAAAAAAATGAAAAATAACTGAAAAACAACAGTTTTACAAAATAAAAGTGTCAAGAAGATTTCTATTTTAATATAATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCCAGACTGGAAACAGTGTGAAATTTCAGATATTGTGAAATAGAGATTTTTATGTTTTGAGTAAAATTTCGAAAAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>GATTAAGTTCAGGGACTTCAGACAAGATACTGCAACAAAATTATGTTGCAARAAAATGAAAAATAACTGAAAAACAACAGTTTTACAAAATAAAAGTGTCAAGAAGATTTCTATTTTAATATAATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCCAGACTGGAAACAGTGTGAAATTTCAGATATTGTGAAATAGAGATTTTTATGTTTTGAGTAAAATTTCGAAAAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27637</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>131531</contig_pos>
        <strand>+</strand>
        <context>AYAAAATAAA[C/T]GTGTCAAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTGCAAAAAAATGAAAAATAACTGAAAAACAACAGTTTTACAAAATAAA</left_flank>
        <right_flank>GTGTCAAGAAGATTTCTATTTTAATATAATTGAGAAATTCACAAAATATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTGAAAACGTCTCGACGCCCACTTTCAATAAATATAATGGATTCTGGAGGCTAAAAAAGTTTTAGGGGGGGGGGGGGGCAAAAAGTTCATACCATCGAATCCTGCAGAAAAATATGAAAAATTAGCAAAATCTTTAAAAATCGATTTTGATGCAAAAAATATCAATTTCGTTCATTTCTGGAAATTTCCAAAAAGTTCTAGATTTGTTTGAATTCCAGCCAAAGCTGAAAAGTTTCAGAAATTGGGTGAGAACTGAGATTTTTTTTGATTTTGAAGGTTTTCTAAATTTTTGTAGTTTTATTCAATTTCTGGGTTAATCTACATAGTTTTCTACAAACTTTAATGCAAGAAAAATGGAAGTGAAACTAATTTAAGCGAACTTTGTGAAAAATTAAATTGTTAGGATTAAGTTCAGGGACTTCAGACAAGATACTGCAACAAAATTATGTTGCAAAAAAATGAAAAATAACTGAAAAACAACAGTTTTACAAAATAAAAGTGTCAAGAAGATTTCTATTTTAATATAATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCCAGACTGGAAACAGTGTGAAATTTCAGATATTGTGAAATAGAGATTTTTATGTTTTGAGTAAAATTTCGAAAAGTTTTGGAAAATATCTCGGAAAAAAATATTGCAAGTGACAAATAGAATTAAAACTATTTTTTTTCCTTCTAATGATAGGGTTTTACTGAATTCTGAGAAGTATACGAGAAGATTCACGAATTTTAGTAATATTTTATGAGATTCTCTTTTTTTCATTAGATTTCATTAGACTTCATGAGATTCTAATTTTGGAATTTCTGTTTGAATTTTTTTTGCAAAAATAAAATGCTGCTGCCAAAATAAAGTGTTTGATGATTTAAAAGTTATCAAATGGGAGGTCATTTTCGAAACCTCCTATCTTCTCCCGCCATTCCACACTGAATTTTTATTGACTTTGAACAAATACTGATC</canonical>
            <polymorphic>TATTGAAAACGTCTCGACGCCCACTTTCAATAAATATAATGGATTCTGGAGGCTAAAAAAGTTTTAGGGGGGGGGGGGGGCAAAAAGTTCATACCATCGAATCCTGCAGAAAAATATGAAAAATTAGCAAAATCTTTAAAAATCGATTTTGATGCAAAAAATATCAATTTCGTTCATTTCTGGAAATTTCCAAAAAGTTCTAGATTTGTTTGAATTCCAGCCAAAGCTGAAAAGTTTCAGAAATTGGGTGAGAACTGAGATTTTTTTTGATTTTGAAGGTTTTCTAAATTTTTGTAGTTTTATTCAATTTCTGGGTTAATCTACATAGTTTTCTACAAACTTTAATGCAAGAAAAATGGAAGTGAAACTAATTTAAGCGAACTTTGTGAAAAATTAAATTGTTAGGATTAAGTTCAGGGACTTCAGACAAGATACTGCAACAAAATTATGTTGCAAAAAAATGAAAAATAACTGAAAAACAACAGTTTTACAAAATAAAYGTGTCAAGAAGATTTCTATTTTAATATAATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCCAGACTGGAAACAGTGTGAAATTTCAGATATTGTGAAATAGAGATTTTTATGTTTTGAGTAAAATTTCGAAAAGTTTTGGAAAATATCTCGGAAAAAAATATTGCAAGTGACAAATAGAATTAAAACTATTTTTTTTCCTTCTAATGATAGGGTTTTACTGAATTCTGAGAAGTATACGAGAAGATTCACGAATTTTAGTAATATTTTATGAGATTCTCTTTTTTTCATTAGATTTCATTAGACTTCATGAGATTCTAATTTTGGAATTTCTGTTTGAATTTTTTTTGCAAAAATAAAATGCTGCTGCCAAAATAAAGTGTTTGATGATTTAAAAGTTATCAAATGGGAGGTCATTTTCGAAACCTCCTATCTTCTCCCGCCATTCCACACTGAATTTTTATTGACTTTGAACAAATACTGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTAAGTTCAGGGACTTCAGAC</pcr_primer_p1>
		<pcr_primer_p2>AAAACTTTTCGAAATTTTACTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATTAAGTTCAGGGACTTCAGACAAGATACTGCAACAAAATTATGTTGCAAAAAAATGAAAAATAACTGAAAAACAACAGTTTTACAAAATAAAAGTGTCAAGAAGATTTCTATTTTAATATAATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCCAGACTGGAAACAGTGTGAAATTTCAGATATTGTGAAATAGAGATTTTTATGTTTTGAGTAAAATTTCGAAAAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>GATTAAGTTCAGGGACTTCAGACAAGATACTGCAACAAAATTATGTTGCAAAAAAATGAAAAATAACTGAAAAACAACAGTTTTACAAAATAAAYGTGTCAAGAAGATTTCTATTTTAATATAATTGAGAAATTCACAAAATATCCTAAAATTCATATTTTCAACTGCATCCAGACTGGAAACAGTGTGAAATTTCAGATATTGTGAAATAGAGATTTTTATGTTTTGAGTAAAATTTCGAAAAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27638</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>159659</contig_pos>
        <strand>+</strand>
        <context>tgttttcata[G/T]attcatggct</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAAGCTACAGGCTCTAATGGCCACAAAGCTGCAAATCACGTGTTTTCATA</left_flank>
        <right_flank>ATTCATGGCTAGCACTATTCAGTTATTCCAAAAAACATTCTTGTGAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCAATTTTCATGAACAACTGGGTTTTCCTAACGGAACCTCGCGGAATCAACAAAACCAATGAGAACGGTGAACAATTAGTGAGTGGTGTACAATTATATATACAAAAACTTTTTTCGGTTGATTTCTACTACTTCTGCAGCTCGGCTGTCAAGCTTCCCATCACTTCGAAGATTTTGGGAAATGTAAAACAGACATGAATCGAAAAGTTTGCATTTAGAATATTTTTTTATTCCTAGTTTTTCACATCAGCTATTCGCCAATTTTTGAAAGCCACCTGTTTTTCTCACATTTTCAGTACAAAAAATGGGCTAATGGAAGTCGTTTTTCAGAAAACGAGAAATACCTGAAAAACTAAGTTTTCTCGAAAATTCTGTGAAAACAAAATTTTCAATCTAGGTTTATTTCACACCCTCCAAAGTTTTCGAGGTGATCGGAAACTTGACAGCCAAGCTACAGGCTCTAATGGCCACAAAGCTGCAAATCACGTGTTTTCATATATTCATGGCTAGCACTATTCAGTTATTCCAAAAAACATTCTTGTGAAATTAATTCCCAGCATACCAAAGAACAGTATTAAAAGTTCAGTATTTTTAAGCCGATTTCTGAACTCTTACTATAACGTTTTCTCATTTTTCATGTTTGGTTTGTTTGTTTGGAAGTTCACTTGCTAGAAATTTCTACTAGGCGCCGGATAAACTGGGCCGGGCCCTCAAAAGGTGGAAAAAAGCCCAACAAGTATTTAAATAATTAAATTCAAATCTTCATCTCAAAAATTTCAATCATTTCCAGGAATCAACATTTCACTACAACACGGGATATTTTCAAATATGTCGAGTTCATATCAATAACAACTCAGGAATCATTTACGATGAAATGGAAATACCACGTAATTAGGTTATCACTGTTTACAGATTATCAAAAACATTTTTCAGCATCCGAAAGTGAATATAAATGTTATCTCAACCCGCTTCTCTCTCAAGTGGATCTCACAGACATT</canonical>
            <polymorphic>TTCCAATTTTCATGAACAACTGGGTTTTCCTAACGGAACCTCGCGGAATCAACAAAACCAATGAGAACGGTGAACAATTAGTGAGTGGTGTACAATTATATATACAAAAACTTTTTTCGGTTGATTTCTACTACTTCTGCAGCTCGGCTGTCAAGCTTCCCATCACTTCGAAGATTTTGGGAAATGTAAAACAGACATGAATCGAAAAGTTTGCATTTAGAATATTTTTTTATTCCTAGTTTTTCACATCAGCTATTCGCCAATTTTTGAAAGCCACCTGTTTTTCTCACATTTTCAGTACAAAAAATGGGCTAATGGAAGTCGTTTTTCAGAAAACGAGAAATACCTGAAAAACTAAGTTTTCTCGAAAATTCTGTGAAAACAAAATTTTCAATCTAGGTTTATTTCACACCCTCCAAAGTTTTCGAGGTGATCGGAAACTTGACAGCCAAGCTACAGGCTCTAATGGCCACAAAGCTGCAAATCACGTGTTTTCATAKATTCATGGCTAGCACTATTCAGTTATTCCAAAAAACATTCTTGTGAAATTAATTCCCAGCATACCAAAGAACAGTATTAAAAGTTCAGTATTTTTAAGCCGATTTCTGAACTCTTACTATAACGTTTTCTCATTTTTCATGTTTGGTTTGTTTGTTTGGAAGTTCACTTGCTAGAAATTTCTACTAGGCGCCGGATAAACTGGGCCGGGCCCTCAAAAGGTGGAAAAAAGCCCAACAAGTATTTAAATAATTAAATTCAAATCTTCATCTCAAAAATTTCAATCATTTCCAGGAATCAACATTTCACTACAACACGGGATATTTTCAAATATGTCGAGTTCATATCAATAACAACTCAGGAATCATTTACGATGAAATGGAAATACCACGTAATTAGGTTATCACTGTTTACAGATTATCAAAAACATTTTTCAGCATCCGAAAGTGAATATAAATGTTATCTCAACCCGCTTCTCTCTCAAGTGGATCTCACAGACATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGAACAATTAGTGAGTGGTGTA</pcr_primer_p1>
		<pcr_primer_p2>GGAATTAATTTCACAAGAATGTTT</pcr_primer_p2>
		<pcr_amplicon_size>487</pcr_amplicon_size>
		<canonical_amplicon>GTGAACAATTAGTGAGTGGTGTACAATTATATATACAAAAACTTTTTTCGGTTGATTTCTACTACTTCTGCAGCTCGGCTGTCAAGCTTCCCATCACTTCGAAGATTTTGGGAAATGTAAAACAGACATGAATCGAAAAGTTTGCATTTAGAATATTTTTTTATTCCTAGTTTTTCACATCAGCTATTCGCCAATTTTTGAAAGCCACCTGTTTTTCTCACATTTTCAGTACAAAAAATGGGCTAATGGAAGTCGTTTTTCAGAAAACGAGAAATACCTGAAAAACTAAGTTTTCTCGAAAATTCTGTGAAAACAAAATTTTCAATCTAGGTTTATTTCACACCCTCCAAAGTTTTCGAGGTGATCGGAAACTTGACAGCCAAGCTACAGGCTCTAATGGCCACAAAGCTGCAAATCACGTGTTTTCATATATTCATGGCTAGCACTATTCAGTTATTCCAAAAAACATTCTTGTGAAATTAATTCC</canonical_amplicon>
		<polymorphic_amplicon>GTGAACAATTAGTGAGTGGTGTACAATTATATATACAAAAACTTTTTTCGGTTGATTTCTACTACTTCTGCAGCTCGGCTGTCAAGCTTCCCATCACTTCGAAGATTTTGGGAAATGTAAAACAGACATGAATCGAAAAGTTTGCATTTAGAATATTTTTTTATTCCTAGTTTTTCACATCAGCTATTCGCCAATTTTTGAAAGCCACCTGTTTTTCTCACATTTTCAGTACAAAAAATGGGCTAATGGAAGTCGTTTTTCAGAAAACGAGAAATACCTGAAAAACTAAGTTTTCTCGAAAATTCTGTGAAAACAAAATTTTCAATCTAGGTTTATTTCACACCCTCCAAAGTTTTCGAGGTGATCGGAAACTTGACAGCCAAGCTACAGGCTCTAATGGCCACAAAGCTGCAAATCACGTGTTTTCATAKATTCATGGCTAGCACTATTCAGTTATTCCAAAAAACATTCTTGTGAAATTAATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27639</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>164491</contig_pos>
        <strand>+</strand>
        <context>AACGCTATTT[C/T]GCTAATTTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTAGCCTACAATCTGTTTTATCTGCCCAATCGCCAAGTTCAACGCTATTT</left_flank>
        <right_flank>GCTAATTTGGTAAATTTCCTAGTATAACTACTAAGACTTGAACAATTAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGAATTACTATGAGGACCTACTATTAGAGTATGTTGATCATGCTTAAAATGATGAGGCGGAATTTTCAGGGAATGGGATCCTTAGGCTTTGGCCTCCAGCCCACAGGGCTGTCACAGGTCAAGTAAGAGAGAAGTGGCTTATTTAAATCACTATATGCTTCAAGAGCAGCGTAAAAACAGGGAAATACCATGGGGACCTACTATTAAGATATTATGATTAACCTAGTCTTGAAAATAATGGGACGGGATTTTTCGGGGATGTAAATTTTTGAAAAAAAGTTCACATTTTTAAAGTGAGCATGTAGGGGTACATGGAATTAAAATTAAAAATATTTTTTTTTCAAAAGTTTCTCTTAAATGGACGGTGAGCTATATATTTAAGACTATAGTTGTGCATTATGACATGAAAGGAATCTAATAGACATAGTCTCCCAAAGGTGTTTTTTTTGTAGCCTACAATCTGTTTTATCTGCCCAATCGCCAAGTTCAACGCTATTTTGCTAATTTGGTAAATTTCCTAGTATAACTACTAAGACTTGAACAATTAAAATAAAATCTACTTTCAGGCTTACTTGAGATTCAATTGAAAAAATGTGGTAGTATGAACAGAAATCGAATTTTCGTCAGATTTTTGAAACCAAGCGAACATGAATGGTTATTTCGGGCACAACGAGAGACAAAAACATCACAATATGCTCTTCAAATATTAATTTTTACGGTTAGTTCGAACAGAAAAGATCTAATGATACTCTTCGTCATGACTTTCGTTCAGATTTCAATGTCGGTCATCTTCACTAAGAAATAAAGGGGAGACACATCTCTTTACAATTGTGCAGTGCAGACATGAGCAGCATTGAGCTCAATATGAAAATGTGTCTAATATAAATGAGCGTGTTAATTTTTCGTAGCAAATTTAACGGTTTCCCCAGAATACAAACTTTTTCTCATTTTCAGGTTTTGATTCATTTTATTTTAATGATGTGCACACTGTCGGTTGAG</canonical>
            <polymorphic>GCGAATTACTATGAGGACCTACTATTAGAGTATGTTGATCATGCTTAAAATGATGAGGCGGAATTTTCAGGGAATGGGATCCTTAGGCTTTGGCCTCCAGCCCACAGGGCTGTCACAGGTCAAGTAAGAGAGAAGTGGCTTATTTAAATCACTATATGCTTCAAGAGCAGCGTAAAAACAGGGAAATACCATGGGGACCTACTATTAAGATATTATGATTAACCTAGTCTTGAAAATAATGGGACGGGATTTTTCGGGGATGTAAATTTTTGAAAAAAAGTTCACATTTTTAAAGTGAGCATGTAGGGGTACATGGAATTAAAATTAAAAATATTTTTTTTTCAAAAGTTTCTCTTAAATGGACGGTGAGCTATATATTTAAGACTATAGTTGTGCATTATGACATGAAAGGAATCTAATAGACATAGTCTCCCAAAGGTGTTTTTTTTGTAGCCTACAATCTGTTTTATCTGCCCAATCGCCAAGTTCAACGCTATTTYGCTAATTTGGTAAATTTCCTAGTATAACTACTAAGACTTGAACAATTAAAATAAAATCTACTTTCAGGCTTACTTGAGATTCAATTGAAAAAATGTGGTAGTATGAACAGAAATCGAATTTTCGTCAGATTTTTGAAACCAAGCGAACATGAATGGTTATTTCGGGCACAACGAGAGACAAAAACATCACAATATGCTCTTCAAATATTAATTTTTACGGTTAGTTCGAACAGAAAAGATCTAATGATACTCTTCGTCATGACTTTCGTTCAGATTTCAATGTCGGTCATCTTCACTAAGAAATAAAGGGGAGACACATCTCTTTACAATTGTGCAGTGCAGACATGAGCAGCATTGAGCTCAATATGAAAATGTGTCTAATATAAATGAGCGTGTTAATTTTTCGTAGCAAATTTAACGGTTTCCCCAGAATACAAACTTTTTCTCATTTTCAGGTTTTGATTCATTTTATTTTAATGATGTGCACACTGTCGGTTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATTAACCTAGTCTTGAAAATAATG</pcr_primer_p1>
		<pcr_primer_p2>CCTGAAAGTAGATTTTATTTTAATTG</pcr_primer_p2>
		<pcr_amplicon_size>353</pcr_amplicon_size>
		<canonical_amplicon>TGATTAACCTAGTCTTGAAAATAATGGGACGGGATTTTTCGGGGATGTAAATTTTTGAAAAAAAGTTCACATTTTTAAAGTGAGCATGTAGGGGTACATGGAATTAAAATTAAAAATATTTTTTTTTCAAAAGTTTCTCTTAAATGGACGGTGAGCTATATATTTAAGACTATAGTTGTGCATTATGACATGAAAGGAATCTAATAGACATAGTCTCCCAAAGGTGTTTTTTTTGTAGCCTACAATCTGTTTTATCTGCCCAATCGCCAAGTTCAACGCTATTTTGCTAATTTGGTAAATTTCCTAGTATAACTACTAAGACTTGAACAATTAAAATAAAATCTACTTTCAGG</canonical_amplicon>
		<polymorphic_amplicon>TGATTAACCTAGTCTTGAAAATAATGGGACGGGATTTTTCGGGGATGTAAATTTTTGAAAAAAAGTTCACATTTTTAAAGTGAGCATGTAGGGGTACATGGAATTAAAATTAAAAATATTTTTTTTTCAAAAGTTTCTCTTAAATGGACGGTGAGCTATATATTTAAGACTATAGTTGTGCATTATGACATGAAAGGAATCTAATAGACATAGTCTCCCAAAGGTGTTTTTTTTGTAGCCTACAATCTGTTTTATCTGCCCAATCGCCAAGTTCAACGCTATTTYGCTAATTTGGTAAATTTCCTAGTATAACTACTAAGACTTGAACAATTAAAATAAAATCTACTTTCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27640</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>164833</contig_pos>
        <strand>+</strand>
        <context>GTGCAGTGCA[A/G]ACATGAGCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCACTAAGAAATAAAGGGGAGACACATCTCTTTACAATTGTGCAGTGCA</left_flank>
        <right_flank>ACATGAGCAGCATTGAGCTCAATATGAAAATGTGTCTAATATAAATGAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAGTTTCTCTTAAATGGACGGTGAGCTATATATTTAAGACTATAGTTGTGCATTATGACATGAAAGGAATCTAATAGACATAGTCTCCCAAAGGTGTTTTTTTTGTAGCCTACAATCTGTTTTATCTGCCCAATCGCCAAGTTCAACGCTATTTTGCTAATTTGGTAAATTTCCTAGTATAACTACTAAGACTTGAACAATTAAAATAAAATCTACTTTCAGGCTTACTTGAGATTCAATTGAAAAAATGTGGTAGTATGAACAGAAATCGAATTTTCGTCAGATTTTTGAAACCAAGCGAACATGAATGGTTATTTCGGGCACAACGAGAGACAAAAACATCACAATATGCTCTTCAAATATTAATTTTTACGGTTAGTTCGAACAGAAAAGATCTAATGATACTCTTCGTCATGACTTTCGTTCAGATTTCAATGTCGGTCATCTTCACTAAGAAATAAAGGGGAGACACATCTCTTTACAATTGTGCAGTGCAGACATGAGCAGCATTGAGCTCAATATGAAAATGTGTCTAATATAAATGAGCGTGTTAATTTTTCGTAGCAAATTTAACGGTTTCCCCAGAATACAAACTTTTTCTCATTTTCAGGTTTTGATTCATTTTATTTTAATGATGTGCACACTGTCGGTTGAGGATAACAAGCAACGCACAACAATTGATGAAGTGGGACCCTGAAAAACAAAGAATTTGAAATGCAGGAAAAAAACTTTGAAAAAAAAAACCAAAAACGAGCGGCGCATAATGAAGTAGGGCCTTGTGAATCTGAGGTTTGTATCAGATGAAAGGCTCGCCGATGTGGGTCTGGAGGATTTTTGTCTCAATTTCTCCTTTTTCTCTCAATTTTTTTAGAACGATATGGGTGAAATTGAGCCAAAAATGCTTCGGACCTGCGTCGGCAAGTCTTCTTTCTGAAACATTGAATGGGCACGTCGTTCCAGTCAATTTAGAAGAAATAATGCGTGAAAGTGAGCCGAA</canonical>
            <polymorphic>CAAAAGTTTCTCTTAAATGGACGGTGAGCTATATATTTAAGACTATAGTTGTGCATTATGACATGAAAGGAATCTAATAGACATAGTCTCCCAAAGGTGTTTTTTTTGTAGCCTACAATCTGTTTTATCTGCCCAATCGCCAAGTTCAACGCTATTTTGCTAATTTGGTAAATTTCCTAGTATAACTACTAAGACTTGAACAATTAAAATAAAATCTACTTTCAGGCTTACTTGAGATTCAATTGAAAAAATGTGGTAGTATGAACAGAAATCGAATTTTCGTCAGATTTTTGAAACCAAGCGAACATGAATGGTTATTTCGGGCACAACGAGAGACAAAAACATCACAATATGCTCTTCAAATATTAATTTTTACGGTTAGTTCGAACAGAAAAGATCTAATGATACTCTTCGTCATGACTTTCGTTCAGATTTCAATGTCGGTCATCTTCACTAAGAAATAAAGGGGAGACACATCTCTTTACAATTGTGCAGTGCARACATGAGCAGCATTGAGCTCAATATGAAAATGTGTCTAATATAAATGAGCGTGTTAATTTTTCGTAGCAAATTTAACGGTTTCCCCAGAATACAAACTTTTTCTCATTTTCAGGTTTTGATTCATTTTATTTTAATGATGTGCACACTGTCGGTTGAGGATAACAAGCAACGCACAACAATTGATGAAGTGGGACCCTGAAAAACAAAGAATTTGAAATGCAGGAAAAAAACTTTGAAAAAAAAAACCAAAAACGAGCGGCGCATAATGAAGTAGGGCCTTGTGAATCTGAGGTTTGTATCAGATGAAAGGCTCGCCGATGTGGGTCTGGAGGATTTTTGTCTCAATTTCTCCTTTTTCTCTCAATTTTTTTAGAACGATATGGGTGAAATTGAGCCAAAAATGCTTCGGACCTGCGTCGGCAAGTCTTCTTTCTGAAACATTGAATGGGCACGTCGTTCCAGTCAATTTAGAAGAAATAATGCGTGAAAGTGAGCCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCGAACAGAAAAGATCTAATG</pcr_primer_p1>
		<pcr_primer_p2>AATAAAATGAATCAAAACCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTCGAACAGAAAAGATCTAATGATACTCTTCGTCATGACTTTCGTTCAGATTTCAATGTCGGTCATCTTCACTAAGAAATAAAGGGGAGACACATCTCTTTACAATTGTGCAGTGCAGACATGAGCAGCATTGAGCTCAATATGAAAATGTGTCTAATATAAATGAGCGTGTTAATTTTTCGTAGCAAATTTAACGGTTTCCCCAGAATACAAACTTTTTCTCATTTTCAGGTTTTGATTCATTTTATT</canonical_amplicon>
		<polymorphic_amplicon>GTTCGAACAGAAAAGATCTAATGATACTCTTCGTCATGACTTTCGTTCAGATTTCAATGTCGGTCATCTTCACTAAGAAATAAAGGGGAGACACATCTCTTTACAATTGTGCAGTGCARACATGAGCAGCATTGAGCTCAATATGAAAATGTGTCTAATATAAATGAGCGTGTTAATTTTTCGTAGCAAATTTAACGGTTTCCCCAGAATACAAACTTTTTCTCATTTTCAGGTTTTGATTCATTTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27641</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>166766</contig_pos>
        <strand>+</strand>
        <context>TACTCTTCGT[A/T]ATGACTTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAATTTTTACGGTTAGTTCGAACAGAAAAGATCTAATGATACTCTTCGT</left_flank>
        <right_flank>ATGACTTTCGTTCAGATTTCAATATCGGTCATCTTCACTAAGAAATAAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATTGATGAGTAAGATACAAAAATGCGAAAAAAAAATGGAAACAACAACAACTTACAGGCATACTCAGACGACAAAAATCTATCACTTGCTTAAACTCAATAATTCACTCCATCTACCGTAACACTCAGTTTGGAAAAAATTCAAGTAAAGGCATGAAATATTATGATGCCAGTACATCGCCGCTGAAGCTCTTCCGGCATATCTGTCCAATCGCAAAGTTCAACGTTATTTCGCTAATTTGGTGAATTTCCTGGTATAACTGCCAAGATTTGAAAAATTAAAATAAAAACTACTTTCAGGCTTACGCATGCCTTGAGATTCAATCGATAAAATGTGGTAGTATGAATAGAAATCGAATTTTAGTCAGATTCTTGAAACCAAGCGAACATGAATGGTTATTTCGGGCATAAGGAGAGACAAAAACATCACAATATGCCCTTCAAAAGTTAATTTTTACGGTTAGTTCGAACAGAAAAGATCTAATGATACTCTTCGTTATGACTTTCGTTCAGATTTCAATATCGGTCATCTTCACTAAGAAATAAAGTGGAGACAGATCTCTTCACAATTGTGCAGTGCAGACATGAGCAGCCGGTAGATTTTCCTTATTATTTTCATTGAGCTGAATATAAAAACGTCCCTCATGTAAACAAATGTGTTAATTGTTTGTAGCAAATTAAACGCATTCCCCAGAATACAATTTTTTTTTCCCATTTCCTTCTGATTCATCCAGTGGGCACATCGTTCTAAGACAATTTAAGAAAAAATGGGTTAAATTGAGAAACTTCGGACTTGCATCGGCAAGTCTTCCTTTTGATACACTCAATGGACACATCGTTCTAGACAATTTAGGGAGAAAATGGGTTAAATTGAAGAGCTTCAGACCTGCGTCGGCAAGTCTTCCTTCAGATACAATCAGTGGGCACATCGTTCTAGACGATTCAAAGGAGAAATGGGTAAAATTGAGCCAAGAATGCTTCCGACCTGCGTCGGCAAG</canonical>
            <polymorphic>AATATTGATGAGTAAGATACAAAAATGCGAAAAAAAAATGGAAACAACAACAACTTACAGGCATACTCAGACGACAAAAATCTATCACTTGCTTAAACTCAATAATTCACTCCATCTACCGTAACACTCAGTTTGGAAAAAATTCAAGTAAAGGCATGAAATATTATGATGCCAGTACATCGCCGCTGAAGCTCTTCCGGCATATCTGTCCAATCGCAAAGTTCAACGTTATTTCGCTAATTTGGTGAATTTCCTGGTATAACTGCCAAGATTTGAAAAATTAAAATAAAAACTACTTTCAGGCTTACGCATGCCTTGAGATTCAATCGATAAAATGTGGTAGTATGAATAGAAATCGAATTTTAGTCAGATTCTTGAAACCAAGCGAACATGAATGGTTATTTCGGGCATAAGGAGAGACAAAAACATCACAATATGCCCTTCAAAAGTTAATTTTTACGGTTAGTTCGAACAGAAAAGATCTAATGATACTCTTCGTWATGACTTTCGTTCAGATTTCAATATCGGTCATCTTCACTAAGAAATAAAGTGGAGACAGATCTCTTCACAATTGTGCAGTGCAGACATGAGCAGCCGGTAGATTTTCCTTATTATTTTCATTGAGCTGAATATAAAAACGTCCCTCATGTAAACAAATGTGTTAATTGTTTGTAGCAAATTAAACGCATTCCCCAGAATACAATTTTTTTTTCCCATTTCCTTCTGATTCATCCAGTGGGCACATCGTTCTAAGACAATTTAAGAAAAAATGGGTTAAATTGAGAAACTTCGGACTTGCATCGGCAAGTCTTCCTTTTGATACACTCAATGGACACATCGTTCTAGACAATTTAGGGAGAAAATGGGTTAAATTGAAGAGCTTCAGACCTGCGTCGGCAAGTCTTCCTTCAGATACAATCAGTGGGCACATCGTTCTAGACGATTCAAAGGAGAAATGGGTAAAATTGAGCCAAGAATGCTTCCGACCTGCGTCGGCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTCAATCGATAAAATGTGGTA</pcr_primer_p1>
		<pcr_primer_p2>TGAAGAGATCTGTCTCCACTTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATTCAATCGATAAAATGTGGTAGTATGAATAGAAATCGAATTTTAGTCAGATTCTTGAAACCAAGCGAACATGAATGGTTATTTCGGGCATAAGGAGAGACAAAAACATCACAATATGCCCTTCAAAAGTTAATTTTTACGGTTAGTTCGAACAGAAAAGATCTAATGATACTCTTCGTTATGACTTTCGTTCAGATTTCAATATCGGTCATCTTCACTAAGAAATAAAGTGGAGACAGATCTCTTCA</canonical_amplicon>
		<polymorphic_amplicon>GATTCAATCGATAAAATGTGGTAGTATGAATAGAAATCGAATTTTAGTCAGATTCTTGAAACCAAGCGAACATGAATGGTTATTTCGGGCATAAGGAGAGACAAAAACATCACAATATGCCCTTCAAAAGTTAATTTTTACGGTTAGTTCGAACAGAAAAGATCTAATGATACTCTTCGTWATGACTTTCGTTCAGATTTCAATATCGGTCATCTTCACTAAGAAATAAAGTGGAGACAGATCTCTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27642</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>167082</contig_pos>
        <strand>+</strand>
        <context>AAGTCTTCCT[A/T]TTGATACACT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAATGGGTTAAATTGAGAAACTTCGGACTTGCATCGGCAAGTCTTCCT</left_flank>
        <right_flank>TTGATACACTCAATGGACACATCGTTCTAGACAATTTAGGGAGAAAATGG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGATTCAATCGATAAAATGTGGTAGTATGAATAGAAATCGAATTTTAGTCAGATTCTTGAAACCAAGCGAACATGAATGGTTATTTCGGGCATAAGGAGAGACAAAAACATCACAATATGCCCTTCAAAAGTTAATTTTTACGGTTAGTTCGAACAGAAAAGATCTAATGATACTCTTCGTTATGACTTTCGTTCAGATTTCAATATCGGTCATCTTCACTAAGAAATAAAGTGGAGACAGATCTCTTCACAATTGTGCAGTGCAGACATGAGCAGCCGGTAGATTTTCCTTATTATTTTCATTGAGCTGAATATAAAAACGTCCCTCATGTAAACAAATGTGTTAATTGTTTGTAGCAAATTAAACGCATTCCCCAGAATACAATTTTTTTTTCCCATTTCCTTCTGATTCATCCAGTGGGCACATCGTTCTAAGACAATTTAAGAAAAAATGGGTTAAATTGAGAAACTTCGGACTTGCATCGGCAAGTCTTCCTTTTGATACACTCAATGGACACATCGTTCTAGACAATTTAGGGAGAAAATGGGTTAAATTGAAGAGCTTCAGACCTGCGTCGGCAAGTCTTCCTTCAGATACAATCAGTGGGCACATCGTTCTAGACGATTCAAAGGAGAAATGGGTAAAATTGAGCCAAGAATGCTTCCGACCTGCGTCGGCAAGTTTTCCTAATAAACGTTATTATTTTGATTCATCATCATAAATTGGGGTATAATGAAGGAAGACAGGAAAGAAAAGTGATTTCAGTTTTCTTTTGCCGGCTCGCTTTTCAGCAAACTTTTTTTTTTCGTTTTTTCGTGAATTCTCATGACATAATTGATGGTTTCTAAAAAATCTATGCTCTCTAAAAATTTGTGACCATGCTGTCGTTTCAGATATTTTATGACCTCAACTGATCAGATGATACTAAATGCTCAAACCATGTGAGCATTCGCGAGATAACAACACCAGCAGCGAGATTTGAAAGAAAAAATCCGTT</canonical>
            <polymorphic>TGAGATTCAATCGATAAAATGTGGTAGTATGAATAGAAATCGAATTTTAGTCAGATTCTTGAAACCAAGCGAACATGAATGGTTATTTCGGGCATAAGGAGAGACAAAAACATCACAATATGCCCTTCAAAAGTTAATTTTTACGGTTAGTTCGAACAGAAAAGATCTAATGATACTCTTCGTTATGACTTTCGTTCAGATTTCAATATCGGTCATCTTCACTAAGAAATAAAGTGGAGACAGATCTCTTCACAATTGTGCAGTGCAGACATGAGCAGCCGGTAGATTTTCCTTATTATTTTCATTGAGCTGAATATAAAAACGTCCCTCATGTAAACAAATGTGTTAATTGTTTGTAGCAAATTAAACGCATTCCCCAGAATACAATTTTTTTTTCCCATTTCCTTCTGATTCATCCAGTGGGCACATCGTTCTAAGACAATTTAAGAAAAAATGGGTTAAATTGAGAAACTTCGGACTTGCATCGGCAAGTCTTCCTWTTGATACACTCAATGGACACATCGTTCTAGACAATTTAGGGAGAAAATGGGTTAAATTGAAGAGCTTCAGACCTGCGTCGGCAAGTCTTCCTTCAGATACAATCAGTGGGCACATCGTTCTAGACGATTCAAAGGAGAAATGGGTAAAATTGAGCCAAGAATGCTTCCGACCTGCGTCGGCAAGTTTTCCTAATAAACGTTATTATTTTGATTCATCATCATAAATTGGGGTATAATGAAGGAAGACAGGAAAGAAAAGTGATTTCAGTTTTCTTTTGCCGGCTCGCTTTTCAGCAAACTTTTTTTTTTCGTTTTTTCGTGAATTCTCATGACATAATTGATGGTTTCTAAAAAATCTATGCTCTCTAAAAATTTGTGACCATGCTGTCGTTTCAGATATTTTATGACCTCAACTGATCAGATGATACTAAATGCTCAAACCATGTGAGCATTCGCGAGATAACAACACCAGCAGCGAGATTTGAAAGAAAAAATCCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATAAAAACGTCCCTCATGTAAA</pcr_primer_p1>
		<pcr_primer_p2>CTCTTCAATTTAACCCATTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATAAAAACGTCCCTCATGTAAACAAATGTGTTAATTGTTTGTAGCAAATTAAACGCATTCCCCAGAATACAATTTTTTTTTCCCATTTCCTTCTGATTCATCCAGTGGGCACATCGTTCTAAGACAATTTAAGAAAAAATGGGTTAAATTGAGAAACTTCGGACTTGCATCGGCAAGTCTTCCTTTTGATACACTCAATGGACACATCGTTCTAGACAATTTAGGGAGAAAATGGGTTAAATTGAAGAG</canonical_amplicon>
		<polymorphic_amplicon>TATAAAAACGTCCCTCATGTAAACAAATGTGTTAATTGTTTGTAGCAAATTAAACGCATTCCCCAGAATACAATTTTTTTTTCCCATTTCCTTCTGATTCATCCAGTGGGCACATCGTTCTAAGACAATTTAAGAAAAAATGGGTTAAATTGAGAAACTTCGGACTTGCATCGGCAAGTCTTCCTWTTGATACACTCAATGGACACATCGTTCTAGACAATTTAGGGAGAAAATGGGTTAAATTGAAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27643</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>215021</contig_pos>
        <strand></strand>
        <context>tctcttattt[T/C]CATGTATAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACGTGAAAATTAATAAAAATCTTTGACTTTTTTGGAAAATTCTCTTATTT</left_flank>
        <right_flank>CATGTATAGTAATGAATATTTCTTCTGAAAAAAGCCTGGCCCGGCCCGTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACACAGGAATCAAGTTAATTGAGCTCAAAATTGTGAGTTTGGGTGGGCTTCTATCAGTAGAAATTCGGTAGTTCTGATTGACAGTCCCAAATTAGATGTTCCGAACCTGACTTGAAATTCAATTTGTATTAATTTCGTTGTTACCATAGGCAAAGTAAGGCAAACGTTTGTCTCCTCTTTTTTCTATAAAGTTTCCCCATAGCATACAATTTGGACAGTCGGCGCATGTTTCCTTTTTCTCGCGCTGAACATGTGGACTTTGCGGTAATTTTTTGTCAAAAGAATGATAAGTGGGACATCTGGAACAGGTGGGAAACTCACGAATCTTCTTTTGAATCCTTTTGATGCTGAAGTGTTTTCTCAATTTTTTAAATTCTTTGAAATCGGAGGCCATATTCATCAACAATTTCCTGGGAAAATTGTTTCTTTTCAGAAAATCAACTGAAAACGTGAAAATTAATAAAAATCTTTGACTTTTTTGGAAAATTCTCTTATTTTCATGTATAGTAATGAATATTTCTTCTGAAAAAAGCCTGGCCCGGCCCGTTTCAAGTATAAATAAAAATGACATGAATTGATAGAGCTAAGAATTTTAAGTGTTGTGTATTTTAATATTGTTGTACATTTTCACGCTCCCATTTTCCTTTCGGAAAATAATTAAGTTGATTTTTGAATAGGAAATGATTTTCCAAGGAACATGTCCATGAATATGGCCTTTGCTGAAAGAAAAACAACAAACATTTTAAAAATGATGGTCAGATTCAGGTTATCTAAGTGATTATTTTGATTTCAGCTTGGATCCCGTTCGTCCTCAAATCTCTAGAAACTCAATGTTTGAATCCGACGAAGAAGAAGAGCGTCTACCATCACACCGAGTTTCGAAACTTAGAATGAAGAAGAGAAGAAACAACGGAGAATGTGGACCAAAGCGCAACTACCGTAGGAAAGATCAAGACGATAAAGATCGCGATGAAAACAGTCAAAACTACCAGCATTCG</canonical>
            <polymorphic>TCACACAGGAATCAAGTTAATTGAGCTCAAAATTGTGAGTTTGGGTGGGCTTCTATCAGTAGAAATTCGGTAGTTCTGATTGACAGTCCCAAATTAGATGTTCCGAACCTGACTTGAAATTCAATTTGTATTAATTTCGTTGTTACCATAGGCAAAGTAAGGCAAACGTTTGTCTCCTCTTTTTTCTATAAAGTTTCCCCATAGCATACAATTTGGACAGTCGGCGCATGTTTCCTTTTTCTCGCGCTGAACATGTGGACTTTGCGGTAATTTTTTGTCAAAAGAATGATAAGTGGGACATCTGGAACAGGTGGGAAACTCACGAATCTTCTTTTGAATCCTTTTGATGCTGAAGTGTTTTCTCAATTTTTTAAATTCTTTGAAATCGGAGGCCATATTCATCAACAATTTCCTGGGAAAATTGTTTCTTTTCAGAAAATCAACTGAAAACGTGAAAATTAATAAAAATCTTTGACTTTTTTGGAAAATTCTCTTATTTYCATGTATAGTAATGAATATTTCTTCTGAAAAAAGCCTGGCCCGGCCCGTTTCAAGTATAAATAAAAATGACATGAATTGATAGAGCTAAGAATTTTAAGTGTTGTGTATTTTAATATTGTTGTACATTTTCACGCTCCCATTTTCCTTTCGGAAAATAATTAAGTTGATTTTTGAATAGGAAATGATTTTCCAAGGAACATGTCCATGAATATGGCCTTTGCTGAAAGAAAAACAACAAACATTTTAAAAATGATGGTCAGATTCAGGTTATCTAAGTGATTATTTTGATTTCAGCTTGGATCCCGTTCGTCCTCAAATCTCTAGAAACTCAATGTTTGAATCCGACGAAGAAGAAGAGCGTCTACCATCACACCGAGTTTCGAAACTTAGAATGAAGAAGAGAAGAAACAACGGAGAATGTGGACCAAAGCGCAACTACCGTAGGAAAGATCAAGACGATAAAGATCGCGATGAAAACAGTCAAAACTACCAGCATTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATCCTTTTGATGCTGAAGT</pcr_primer_p1>
		<pcr_primer_p2>GCTCTATCAATTCATGTCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAATCCTTTTGATGCTGAAGTGTTTTCTCAATTTTTTAAATTCTTTGAAATCGGAGGCCATATTCATCAACAATTTCCTGGGAAAATTGTTTCTTTTCAGAAAATCAACTGAAAACGTGAAAATTAATAAAAATCTTTGACTTTTTTGGAAAATTCTCTTATTTTCATGTATAGTAATGAATATTTCTTCTGAAAAAAGCCTGGCCCGGCCCGTTTCAAGTATAAATAAAAATGACATGAATTGATAGAGC</canonical_amplicon>
		<polymorphic_amplicon>GAATCCTTTTGATGCTGAAGTGTTTTCTCAATTTTTTAAATTCTTTGAAATCGGAGGCCATATTCATCAACAATTTCCTGGGAAAATTGTTTCTTTTCAGAAAATCAACTGAAAACGTGAAAATTAATAAAAATCTTTGACTTTTTTGGAAAATTCTCTTATTTYCATGTATAGTAATGAATATTTCTTCTGAAAAAAGCCTGGCCCGGCCCGTTTCAAGTATAAATAAAAATGACATGAATTGATAGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27644</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>215166</contig_pos>
        <strand></strand>
        <context>ctcccatttt[C/T]ytttcggaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAGTGTTGTGTATTTTAATATTGTTGTACATTTTCACGCTCCCATTTT</left_flank>
        <right_flank>CTTTCGGAAAATAATTAAGTTGATTTTTGAATAGGAAATGATTTTCCAAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATAGGCAAAGTAAGGCAAACGTTTGTCTCCTCTTTTTTCTATAAAGTTTCCCCATAGCATACAATTTGGACAGTCGGCGCATGTTTCCTTTTTCTCGCGCTGAACATGTGGACTTTGCGGTAATTTTTTGTCAAAAGAATGATAAGTGGGACATCTGGAACAGGTGGGAAACTCACGAATCTTCTTTTGAATCCTTTTGATGCTGAAGTGTTTTCTCAATTTTTTAAATTCTTTGAAATCGGAGGCCATATTCATCAACAATTTCCTGGGAAAATTGTTTCTTTTCAGAAAATCAACTGAAAACGTGAAAATTAATAAAAATCTTTGACTTTTTTGGAAAATTCTCTTATTTTCATGTATAGTAATGAATATTTCTTCTGAAAAAAGCCTGGCCCGGCCCGTTTCAAGTATAAATAAAAATGACATGAATTGATAGAGCTAAGAATTTTAAGTGTTGTGTATTTTAATATTGTTGTACATTTTCACGCTCCCATTTTCCTTTCGGAAAATAATTAAGTTGATTTTTGAATAGGAAATGATTTTCCAAGGAACATGTCCATGAATATGGCCTTTGCTGAAAGAAAAACAACAAACATTTTAAAAATGATGGTCAGATTCAGGTTATCTAAGTGATTATTTTGATTTCAGCTTGGATCCCGTTCGTCCTCAAATCTCTAGAAACTCAATGTTTGAATCCGACGAAGAAGAAGAGCGTCTACCATCACACCGAGTTTCGAAACTTAGAATGAAGAAGAGAAGAAACAACGGAGAATGTGGACCAAAGCGCAACTACCGTAGGAAAGATCAAGACGATAAAGATCGCGATGAAAACAGTCAAAACTACCAGCATTCGTACTGCACTGGCTCCGCTGTGAGACGTATGATGTATGTTTGTTTTTGCTTTTAATTTTGTTAGATGTGATATTAGCTATTTTGCAGAAAAATTTTTCCATTTTTCAGCAACACCTAAACGGACACTTCTTTTCTGGACATCCTTC</canonical>
            <polymorphic>CCATAGGCAAAGTAAGGCAAACGTTTGTCTCCTCTTTTTTCTATAAAGTTTCCCCATAGCATACAATTTGGACAGTCGGCGCATGTTTCCTTTTTCTCGCGCTGAACATGTGGACTTTGCGGTAATTTTTTGTCAAAAGAATGATAAGTGGGACATCTGGAACAGGTGGGAAACTCACGAATCTTCTTTTGAATCCTTTTGATGCTGAAGTGTTTTCTCAATTTTTTAAATTCTTTGAAATCGGAGGCCATATTCATCAACAATTTCCTGGGAAAATTGTTTCTTTTCAGAAAATCAACTGAAAACGTGAAAATTAATAAAAATCTTTGACTTTTTTGGAAAATTCTCTTATTTTCATGTATAGTAATGAATATTTCTTCTGAAAAAAGCCTGGCCCGGCCCGTTTCAAGTATAAATAAAAATGACATGAATTGATAGAGCTAAGAATTTTAAGTGTTGTGTATTTTAATATTGTTGTACATTTTCACGCTCCCATTTTYCTTTCGGAAAATAATTAAGTTGATTTTTGAATAGGAAATGATTTTCCAAGGAACATGTCCATGAATATGGCCTTTGCTGAAAGAAAAACAACAAACATTTTAAAAATGATGGTCAGATTCAGGTTATCTAAGTGATTATTTTGATTTCAGCTTGGATCCCGTTCGTCCTCAAATCTCTAGAAACTCAATGTTTGAATCCGACGAAGAAGAAGAGCGTCTACCATCACACCGAGTTTCGAAACTTAGAATGAAGAAGAGAAGAAACAACGGAGAATGTGGACCAAAGCGCAACTACCGTAGGAAAGATCAAGACGATAAAGATCGCGATGAAAACAGTCAAAACTACCAGCATTCGTACTGCACTGGCTCCGCTGTGAGACGTATGATGTATGTTTGTTTTTGCTTTTAATTTTGTTAGATGTGATATTAGCTATTTTGCAGAAAAATTTTTCCATTTTTCAGCAACACCTAAACGGACACTTCTTTTCTGGACATCCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCTAAGAATTTTAAGTGTTGTG</pcr_primer_p1>
		<pcr_primer_p2>TTGAGTTTCTAGAGATTTGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAGCTAAGAATTTTAAGTGTTGTGTATTTTAATATTGTTGTACATTTTCACGCTCCCATTTTCCTTTCGGAAAATAATTAAGTTGATTTTTGAATAGGAAATGATTTTCCAAGGAACATGTCCATGAATATGGCCTTTGCTGAAAGAAAAACAACAAACATTTTAAAAATGATGGTCAGATTCAGGTTATCTAAGTGATTATTTTGATTTCAGCTTGGATCCCGTTCGTCCTCAAATCTCTAGAAACTCAA</canonical_amplicon>
		<polymorphic_amplicon>GAGCTAAGAATTTTAAGTGTTGTGTATTTTAATATTGTTGTACATTTTCACGCTCCCATTTTYCTTTCGGAAAATAATTAAGTTGATTTTTGAATAGGAAATGATTTTCCAAGGAACATGTCCATGAATATGGCCTTTGCTGAAAGAAAAACAACAAACATTTTAAAAATGATGGTCAGATTCAGGTTATCTAAGTGATTATTTTGATTTCAGCTTGGATCCCGTTCGTCCTCAAATCTCTAGAAACTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27645</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>215167</contig_pos>
        <strand></strand>
        <context>tcccatttty[C/T]tttcggaaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAGTGTTGTGTATTTTAATATTGTTGTACATTTTCACGCTCCCATTTTC</left_flank>
        <right_flank>TTTCGGAAAATAATTAAGTTGATTTTTGAATAGGAAATGATTTTCCAAGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATAGGCAAAGTAAGGCAAACGTTTGTCTCCTCTTTTTTCTATAAAGTTTCCCCATAGCATACAATTTGGACAGTCGGCGCATGTTTCCTTTTTCTCGCGCTGAACATGTGGACTTTGCGGTAATTTTTTGTCAAAAGAATGATAAGTGGGACATCTGGAACAGGTGGGAAACTCACGAATCTTCTTTTGAATCCTTTTGATGCTGAAGTGTTTTCTCAATTTTTTAAATTCTTTGAAATCGGAGGCCATATTCATCAACAATTTCCTGGGAAAATTGTTTCTTTTCAGAAAATCAACTGAAAACGTGAAAATTAATAAAAATCTTTGACTTTTTTGGAAAATTCTCTTATTTTCATGTATAGTAATGAATATTTCTTCTGAAAAAAGCCTGGCCCGGCCCGTTTCAAGTATAAATAAAAATGACATGAATTGATAGAGCTAAGAATTTTAAGTGTTGTGTATTTTAATATTGTTGTACATTTTCACGCTCCCATTTTCCTTTCGGAAAATAATTAAGTTGATTTTTGAATAGGAAATGATTTTCCAAGGAACATGTCCATGAATATGGCCTTTGCTGAAAGAAAAACAACAAACATTTTAAAAATGATGGTCAGATTCAGGTTATCTAAGTGATTATTTTGATTTCAGCTTGGATCCCGTTCGTCCTCAAATCTCTAGAAACTCAATGTTTGAATCCGACGAAGAAGAAGAGCGTCTACCATCACACCGAGTTTCGAAACTTAGAATGAAGAAGAGAAGAAACAACGGAGAATGTGGACCAAAGCGCAACTACCGTAGGAAAGATCAAGACGATAAAGATCGCGATGAAAACAGTCAAAACTACCAGCATTCGTACTGCACTGGCTCCGCTGTGAGACGTATGATGTATGTTTGTTTTTGCTTTTAATTTTGTTAGATGTGATATTAGCTATTTTGCAGAAAAATTTTTCCATTTTTCAGCAACACCTAAACGGACACTTCTTTTCTGGACATCCTTCT</canonical>
            <polymorphic>CATAGGCAAAGTAAGGCAAACGTTTGTCTCCTCTTTTTTCTATAAAGTTTCCCCATAGCATACAATTTGGACAGTCGGCGCATGTTTCCTTTTTCTCGCGCTGAACATGTGGACTTTGCGGTAATTTTTTGTCAAAAGAATGATAAGTGGGACATCTGGAACAGGTGGGAAACTCACGAATCTTCTTTTGAATCCTTTTGATGCTGAAGTGTTTTCTCAATTTTTTAAATTCTTTGAAATCGGAGGCCATATTCATCAACAATTTCCTGGGAAAATTGTTTCTTTTCAGAAAATCAACTGAAAACGTGAAAATTAATAAAAATCTTTGACTTTTTTGGAAAATTCTCTTATTTTCATGTATAGTAATGAATATTTCTTCTGAAAAAAGCCTGGCCCGGCCCGTTTCAAGTATAAATAAAAATGACATGAATTGATAGAGCTAAGAATTTTAAGTGTTGTGTATTTTAATATTGTTGTACATTTTCACGCTCCCATTTTCYTTTCGGAAAATAATTAAGTTGATTTTTGAATAGGAAATGATTTTCCAAGGAACATGTCCATGAATATGGCCTTTGCTGAAAGAAAAACAACAAACATTTTAAAAATGATGGTCAGATTCAGGTTATCTAAGTGATTATTTTGATTTCAGCTTGGATCCCGTTCGTCCTCAAATCTCTAGAAACTCAATGTTTGAATCCGACGAAGAAGAAGAGCGTCTACCATCACACCGAGTTTCGAAACTTAGAATGAAGAAGAGAAGAAACAACGGAGAATGTGGACCAAAGCGCAACTACCGTAGGAAAGATCAAGACGATAAAGATCGCGATGAAAACAGTCAAAACTACCAGCATTCGTACTGCACTGGCTCCGCTGTGAGACGTATGATGTATGTTTGTTTTTGCTTTTAATTTTGTTAGATGTGATATTAGCTATTTTGCAGAAAAATTTTTCCATTTTTCAGCAACACCTAAACGGACACTTCTTTTCTGGACATCCTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCTAAGAATTTTAAGTGTTGTG</pcr_primer_p1>
		<pcr_primer_p2>TTGAGTTTCTAGAGATTTGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAGCTAAGAATTTTAAGTGTTGTGTATTTTAATATTGTTGTACATTTTCACGCTCCCATTTTCCTTTCGGAAAATAATTAAGTTGATTTTTGAATAGGAAATGATTTTCCAAGGAACATGTCCATGAATATGGCCTTTGCTGAAAGAAAAACAACAAACATTTTAAAAATGATGGTCAGATTCAGGTTATCTAAGTGATTATTTTGATTTCAGCTTGGATCCCGTTCGTCCTCAAATCTCTAGAAACTCAA</canonical_amplicon>
		<polymorphic_amplicon>GAGCTAAGAATTTTAAGTGTTGTGTATTTTAATATTGTTGTACATTTTCACGCTCCCATTTTCYTTTCGGAAAATAATTAAGTTGATTTTTGAATAGGAAATGATTTTCCAAGGAACATGTCCATGAATATGGCCTTTGCTGAAAGAAAAACAACAAACATTTTAAAAATGATGGTCAGATTCAGGTTATCTAAGTGATTATTTTGATTTCAGCTTGGATCCCGTTCGTCCTCAAATCTCTAGAAACTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27646</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>217561</contig_pos>
        <strand></strand>
        <context>gttgattttc[A/G]gccattatca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAAGTACGGTGAATAAAGTTTACAAAAACGTATTTATCAGTTGATTTTC</left_flank>
        <right_flank>GCCATTATCAGTAGTATGGAGCTCGGCTTCCAAGTTTCCTACGTTTGGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCCCGTATTTGAAACTATAACTGAGCAAATTTAGAAAAATGTCTGAGATGAAGGCTAAACATGGTTCCCTTGTGAGCTATCTTAGAATATTTTTAGCCTAGAGAGTATTTTTTAGGTCTTTTCAAATGATTTCTCGAGTCAATAAGTAAGAACAAAGTTTTTGTAAAATGAAAGTTTGCAAAAAATCATTCGTCAAAAAAATTTGTGAACAAAATTCTGAATTTTCAGAATGTTCTCAAGGGACCCTTATTTTTGATTTATAGAAACCTGACATTATGAGAAAACTTACTTGATATGGAAAAAGTGTGGAAGTGTTGACTTTGTCCCAGGCTTCAGCAATTGTTTTTTTCATGACCTCGAAAGAAGGTACTTTTCGTGTCCAGAACTGAAAATATGGAAATAGACGTTTTTAGAAGATAAGGCCCAGGAAATGTACATAAGTATAGCATAAGTACGGTGAATAAAGTTTACAAAAACGTATTTATCAGTTGATTTTCAGCCATTATCAGTAGTATGGAGCTCGGCTTCCAAGTTTCCTACGTTTGGAAATGTAAAACAGTGTTTGGAAATGTAAAACAGACCTAGACTGAAAACTTTGCATTCACAGAATTTTCTGAAAATGCCTAGTTTTTCAGTTATTTGTCGATCTCTATGAGACACCTGTATTTTCAACTTTTCGAAACGATAACAAAAAAGGAGCTCTTCCAAAACTTGGTAAATAACTGAAAAACTAGAAATTCTTTAAAAATTCTGAAAATGCAAAATTTTCAATCCATCCTTCAAAATTTCTAAAGTGATTGGACACTTCAAAGGCTTCGGAAAACGGTCAAAATTACCGTAAAAATTCTGTGAATTTTAAAGACACCCTTCGAAACACCCTTCGAAATTTTCAGTGATCGGAAACTTGACAGCCAAGCTCCAGACGTTTGAAAATTGCGAAACTAAACTAAAAAATATGTTTCTCTGAATCTTATTGACTATTGCTATATAAGATAACC</canonical>
            <polymorphic>AAGCCCGTATTTGAAACTATAACTGAGCAAATTTAGAAAAATGTCTGAGATGAAGGCTAAACATGGTTCCCTTGTGAGCTATCTTAGAATATTTTTAGCCTAGAGAGTATTTTTTAGGTCTTTTCAAATGATTTCTCGAGTCAATAAGTAAGAACAAAGTTTTTGTAAAATGAAAGTTTGCAAAAAATCATTCGTCAAAAAAATTTGTGAACAAAATTCTGAATTTTCAGAATGTTCTCAAGGGACCCTTATTTTTGATTTATAGAAACCTGACATTATGAGAAAACTTACTTGATATGGAAAAAGTGTGGAAGTGTTGACTTTGTCCCAGGCTTCAGCAATTGTTTTTTTCATGACCTCGAAAGAAGGTACTTTTCGTGTCCAGAACTGAAAATATGGAAATAGACGTTTTTAGAAGATAAGGCCCAGGAAATGTACATAAGTATAGCATAAGTACGGTGAATAAAGTTTACAAAAACGTATTTATCAGTTGATTTTCRGCCATTATCAGTAGTATGGAGCTCGGCTTCCAAGTTTCCTACGTTTGGAAATGTAAAACAGTGTTTGGAAATGTAAAACAGACCTAGACTGAAAACTTTGCATTCACAGAATTTTCTGAAAATGCCTAGTTTTTCAGTTATTTGTCGATCTCTATGAGACACCTGTATTTTCAACTTTTCGAAACGATAACAAAAAAGGAGCTCTTCCAAAACTTGGTAAATAACTGAAAAACTAGAAATTCTTTAAAAATTCTGAAAATGCAAAATTTTCAATCCATCCTTCAAAATTTCTAAAGTGATTGGACACTTCAAAGGCTTCGGAAAACGGTCAAAATTACCGTAAAAATTCTGTGAATTTTAAAGACACCCTTCGAAACACCCTTCGAAATTTTCAGTGATCGGAAACTTGACAGCCAAGCTCCAGACGTTTGAAAATTGCGAAACTAAACTAAAAAATATGTTTCTCTGAATCTTATTGACTATTGCTATATAAGATAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>234 175 114 98 92 82 77 53 22 20 20 5 5 3</canonical_bands>
                <polymorphic_bands>234 175 114 98 97 92 82 53 22 20 5 5 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCCAGGAAATGTACATAAG</pcr_primer_p1>
		<pcr_primer_p2>CCAGAAGTGTTCTATAACTACATGA</pcr_primer_p2>
		<pcr_amplicon_size>640</pcr_amplicon_size>
		<canonical_amplicon>GCCCAGGAAATGTACATAAGTATAGCATAAGTACGGTGAATAAAGTTTACAAAAACGTATTTATCAGTTGATTTTCAGCCATTATCAGTAGTATGGAGCTC</canonical_amplicon>
		<polymorphic_amplicon>GCCCAGGAAATGTACATAAGTATAGCATAAGTACGGTGAATAAAGTTTACAAAAACGTATTTATCAGTTGATTTTCRGCCATTATCAGTAGTATGGAGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27647</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>275995</contig_pos>
        <strand>+</strand>
        <context>ACGTATTTTT[C/T]AAAATTATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTT</left_flank>
        <right_flank>AAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATTTTGGAGTGACTTATACCAAATTCGAATTTATTCAGTGAGTTTCCCACAATTTGAATCAAATCTTGAAACTTTTTCAGATATGCCAACGCACACTCGCAAACTGTCTAATGTTAAGATTAACTGATCATTATCAATTCAGATCGAAAGTTAAGAAATAAATGAATCAAATTTTATATTAAATTTCATATTGATAGAACATTTCCAGCAGTTCTGGTTGTTTTATGTCGCAAGTTAGAAAACGAAAAAAAATGCTCACAAACCGTCGCCGTTGGGCTCAAAAATCTAACCGAGATGGTGCAATTGAGTAGATAGTGAATATTTCGATACATCTCCAAATTCCGAATCATTCAGTGAGTTGTATATAGTTTGAATTTAAAACTGAAACATCAATGTTTTCAGAATGGTCAGAGTAATGCACAGTTGCACAGTTTCGAATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTAT</canonical>
            <polymorphic>ACATTTTGGAGTGACTTATACCAAATTCGAATTTATTCAGTGAGTTTCCCACAATTTGAATCAAATCTTGAAACTTTTTCAGATATGCCAACGCACACTCGCAAACTGTCTAATGTTAAGATTAACTGATCATTATCAATTCAGATCGAAAGTTAAGAAATAAATGAATCAAATTTTATATTAAATTTCATATTGATAGAACATTTCCAGCAGTTCTGGTTGTTTTATGTCGCAAGTTAGAAAACGAAAAAAAATGCTCACAAACCGTCGCCGTTGGGCTCAAAAATCTAACCGAGATGGTGCAATTGAGTAGATAGTGAATATTTCGATACATCTCCAAATTCCGAATCATTCAGTGAGTTGTATATAGTTTGAATTTAAAACTGAAACATCAATGTTTTCAGAATGGTCAGAGTAATGCACAGTTGCACAGTTTCGAATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTYAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 379 121</canonical_bands>
                <polymorphic_bands>621 379</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>298 197 149 121 116 54 31 28 6</canonical_bands>
                <polymorphic_bands>298 197 175 149 116 31 28 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTCTTCAAAGCTTTCCTATG</pcr_primer_p1>
		<pcr_primer_p2>GAGATCATTCAAAACAAGAATTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTC</canonical_amplicon>
		<polymorphic_amplicon>AATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTYAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27648</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>276053</contig_pos>
        <strand>+</strand>
        <context>TATGTTTAAC[A/T]CAGTATCCGW</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAAC</left_flank>
        <right_flank>CAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCAAATCTTGAAACTTTTTCAGATATGCCAACGCACACTCGCAAACTGTCTAATGTTAAGATTAACTGATCATTATCAATTCAGATCGAAAGTTAAGAAATAAATGAATCAAATTTTATATTAAATTTCATATTGATAGAACATTTCCAGCAGTTCTGGTTGTTTTATGTCGCAAGTTAGAAAACGAAAAAAAATGCTCACAAACCGTCGCCGTTGGGCTCAAAAATCTAACCGAGATGGTGCAATTGAGTAGATAGTGAATATTTCGATACATCTCCAAATTCCGAATCATTCAGTGAGTTGTATATAGTTTGAATTTAAAACTGAAACATCAATGTTTTCAGAATGGTCAGAGTAATGCACAGTTGCACAGTTTCGAATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAA</canonical>
            <polymorphic>AATCAAATCTTGAAACTTTTTCAGATATGCCAACGCACACTCGCAAACTGTCTAATGTTAAGATTAACTGATCATTATCAATTCAGATCGAAAGTTAAGAAATAAATGAATCAAATTTTATATTAAATTTCATATTGATAGAACATTTCCAGCAGTTCTGGTTGTTTTATGTCGCAAGTTAGAAAACGAAAAAAAATGCTCACAAACCGTCGCCGTTGGGCTCAAAAATCTAACCGAGATGGTGCAATTGAGTAGATAGTGAATATTTCGATACATCTCCAAATTCCGAATCATTCAGTGAGTTGTATATAGTTTGAATTTAAAACTGAAACATCAATGTTTTCAGAATGGTCAGAGTAATGCACAGTTGCACAGTTTCGAATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACWCAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>459 159 158 75 53 49 24 15 8</canonical_bands>
                <polymorphic_bands>459 159 158 90 53 49 24 8</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>163 121 103 74 73 64 47 44 42 42 39 37 27 18 18 17 15 14 12 11 8 7 2 2</canonical_bands>
                <polymorphic_bands>163 121 103 74 73 64 47 44 42 42 39 37 33 27 18 17 14 12 11 8 7 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTCTTCAAAGCTTTCCTATG</pcr_primer_p1>
		<pcr_primer_p2>GAGATCATTCAAAACAAGAATTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTC</canonical_amplicon>
		<polymorphic_amplicon>AATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACWCAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27649</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>276063</contig_pos>
        <strand>+</strand>
        <context>WCAGTATCCG[A/T]TGACACCGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCG</left_flank>
        <right_flank>TGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAACTTTTTCAGATATGCCAACGCACACTCGCAAACTGTCTAATGTTAAGATTAACTGATCATTATCAATTCAGATCGAAAGTTAAGAAATAAATGAATCAAATTTTATATTAAATTTCATATTGATAGAACATTTCCAGCAGTTCTGGTTGTTTTATGTCGCAAGTTAGAAAACGAAAAAAAATGCTCACAAACCGTCGCCGTTGGGCTCAAAAATCTAACCGAGATGGTGCAATTGAGTAGATAGTGAATATTTCGATACATCTCCAAATTCCGAATCATTCAGTGAGTTGTATATAGTTTGAATTTAAAACTGAAACATCAATGTTTTCAGAATGGTCAGAGTAATGCACAGTTGCACAGTTTCGAATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAATACAAAATTT</canonical>
            <polymorphic>TGAAACTTTTTCAGATATGCCAACGCACACTCGCAAACTGTCTAATGTTAAGATTAACTGATCATTATCAATTCAGATCGAAAGTTAAGAAATAAATGAATCAAATTTTATATTAAATTTCATATTGATAGAACATTTCCAGCAGTTCTGGTTGTTTTATGTCGCAAGTTAGAAAACGAAAAAAAATGCTCACAAACCGTCGCCGTTGGGCTCAAAAATCTAACCGAGATGGTGCAATTGAGTAGATAGTGAATATTTCGATACATCTCCAAATTCCGAATCATTCAGTGAGTTGTATATAGTTTGAATTTAAAACTGAAACATCAATGTTTTCAGAATGGTCAGAGTAATGCACAGTTGCACAGTTTCGAATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGWTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAATACAAAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>501 311 188</canonical_bands>
                <polymorphic_bands>689 311</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>404 311 168 81 20 16</canonical_bands>
                <polymorphic_bands>404 311 168 101 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTCTTCAAAGCTTTCCTATG</pcr_primer_p1>
		<pcr_primer_p2>GAGATCATTCAAAACAAGAATTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTC</canonical_amplicon>
		<polymorphic_amplicon>AATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGWTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27650</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>276098</contig_pos>
        <strand>+</strand>
        <context>TCAAAAATTT[A/C]TCCCAATTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTT</left_flank>
        <right_flank>TCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTGTCTAATGTTAAGATTAACTGATCATTATCAATTCAGATCGAAAGTTAAGAAATAAATGAATCAAATTTTATATTAAATTTCATATTGATAGAACATTTCCAGCAGTTCTGGTTGTTTTATGTCGCAAGTTAGAAAACGAAAAAAAATGCTCACAAACCGTCGCCGTTGGGCTCAAAAATCTAACCGAGATGGTGCAATTGAGTAGATAGTGAATATTTCGATACATCTCCAAATTCCGAATCATTCAGTGAGTTGTATATAGTTTGAATTTAAAACTGAAACATCAATGTTTTCAGAATGGTCAGAGTAATGCACAGTTGCACAGTTTCGAATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAATACAAAATTTCAAACCTCAAACTCATCAAACTTGCTGGAATCCGA</canonical>
            <polymorphic>AACTGTCTAATGTTAAGATTAACTGATCATTATCAATTCAGATCGAAAGTTAAGAAATAAATGAATCAAATTTTATATTAAATTTCATATTGATAGAACATTTCCAGCAGTTCTGGTTGTTTTATGTCGCAAGTTAGAAAACGAAAAAAAATGCTCACAAACCGTCGCCGTTGGGCTCAAAAATCTAACCGAGATGGTGCAATTGAGTAGATAGTGAATATTTCGATACATCTCCAAATTCCGAATCATTCAGTGAGTTGTATATAGTTTGAATTTAAAACTGAAACATCAATGTTTTCAGAATGGTCAGAGTAATGCACAGTTGCACAGTTTCGAATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTMTCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAATACAAAATTTCAAACCTCAAACTCATCAAACTTGCTGGAATCCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCTTCAAAGCTTTCCTATG</pcr_primer_p1>
		<pcr_primer_p2>GAGATCATTCAAAACAAGAATTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTC</canonical_amplicon>
		<polymorphic_amplicon>AATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTMTCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27651</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>276189</contig_pos>
        <strand>+</strand>
        <context>CTCCATTCTC[C/T]ATATCGTTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTC</left_flank>
        <right_flank>ATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAGAACATTTCCAGCAGTTCTGGTTGTTTTATGTCGCAAGTTAGAAAACGAAAAAAAATGCTCACAAACCGTCGCCGTTGGGCTCAAAAATCTAACCGAGATGGTGCAATTGAGTAGATAGTGAATATTTCGATACATCTCCAAATTCCGAATCATTCAGTGAGTTGTATATAGTTTGAATTTAAAACTGAAACATCAATGTTTTCAGAATGGTCAGAGTAATGCACAGTTGCACAGTTTCGAATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAATACAAAATTTCAAACCTCAAACTCATCAAACTTGCTGGAATCCGAAAATATTTCAGGTCCACTTGATATATATTCACAATCAGAAAAATTCAAAACTTTTTATAATTCATTCGGTTTACCACAAGATAGAAGTTTG</canonical>
            <polymorphic>GATAGAACATTTCCAGCAGTTCTGGTTGTTTTATGTCGCAAGTTAGAAAACGAAAAAAAATGCTCACAAACCGTCGCCGTTGGGCTCAAAAATCTAACCGAGATGGTGCAATTGAGTAGATAGTGAATATTTCGATACATCTCCAAATTCCGAATCATTCAGTGAGTTGTATATAGTTTGAATTTAAAACTGAAACATCAATGTTTTCAGAATGGTCAGAGTAATGCACAGTTGCACAGTTTCGAATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCYATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAATACAAAATTTCAAACCTCAAACTCATCAAACTTGCTGGAATCCGAAAATATTTCAGGTCCACTTGATATATATTCACAATCAGAAAAATTCAAAACTTTTTATAATTCATTCGGTTTACCACAAGATAGAAGTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCAGTCGAAATGTTTCTT</pcr_primer_p1>
		<pcr_primer_p2>GAAGTTTCTGGGAGATCTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTC</canonical_amplicon>
		<polymorphic_amplicon>TTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCYATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27652</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>276203</contig_pos>
        <strand>+</strand>
        <context>TCGTTTAATG[A/T]TGTGAGCATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATG</left_flank>
        <right_flank>TGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCAGTTCTGGTTGTTTTATGTCGCAAGTTAGAAAACGAAAAAAAATGCTCACAAACCGTCGCCGTTGGGCTCAAAAATCTAACCGAGATGGTGCAATTGAGTAGATAGTGAATATTTCGATACATCTCCAAATTCCGAATCATTCAGTGAGTTGTATATAGTTTGAATTTAAAACTGAAACATCAATGTTTTCAGAATGGTCAGAGTAATGCACAGTTGCACAGTTTCGAATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAATACAAAATTTCAAACCTCAAACTCATCAAACTTGCTGGAATCCGAAAATATTTCAGGTCCACTTGATATATATTCACAATCAGAAAAATTCAAAACTTTTTATAATTCATTCGGTTTACCACAAGATAGAAGTTTGTCATCTTTCTGGCC</canonical>
            <polymorphic>AGCAGTTCTGGTTGTTTTATGTCGCAAGTTAGAAAACGAAAAAAAATGCTCACAAACCGTCGCCGTTGGGCTCAAAAATCTAACCGAGATGGTGCAATTGAGTAGATAGTGAATATTTCGATACATCTCCAAATTCCGAATCATTCAGTGAGTTGTATATAGTTTGAATTTAAAACTGAAACATCAATGTTTTCAGAATGGTCAGAGTAATGCACAGTTGCACAGTTTCGAATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGWTGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAATACAAAATTTCAAACCTCAAACTCATCAAACTTGCTGGAATCCGAAAATATTTCAGGTCCACTTGATATATATTCACAATCAGAAAAATTCAAAACTTTTTATAATTCATTCGGTTTACCACAAGATAGAAGTTTGTCATCTTTCTGGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGTTTCTTTCCAATTCTTGT</pcr_primer_p1>
		<pcr_primer_p2>GAAGTTTCTGGGAGATCTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>AAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTC</canonical_amplicon>
		<polymorphic_amplicon>AAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGWTGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27653</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>276223</contig_pos>
        <strand>+</strand>
        <context>AAAACTGGCC[C/G]AATATAATAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCC</left_flank>
        <right_flank>AATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCGCAAGTTAGAAAACGAAAAAAAATGCTCACAAACCGTCGCCGTTGGGCTCAAAAATCTAACCGAGATGGTGCAATTGAGTAGATAGTGAATATTTCGATACATCTCCAAATTCCGAATCATTCAGTGAGTTGTATATAGTTTGAATTTAAAACTGAAACATCAATGTTTTCAGAATGGTCAGAGTAATGCACAGTTGCACAGTTTCGAATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAATACAAAATTTCAAACCTCAAACTCATCAAACTTGCTGGAATCCGAAAATATTTCAGGTCCACTTGATATATATTCACAATCAGAAAAATTCAAAACTTTTTATAATTCATTCGGTTTACCACAAGATAGAAGTTTGTCATCTTTCTGGCCCAACGATAACAGAACATTTG</canonical>
            <polymorphic>GTCGCAAGTTAGAAAACGAAAAAAAATGCTCACAAACCGTCGCCGTTGGGCTCAAAAATCTAACCGAGATGGTGCAATTGAGTAGATAGTGAATATTTCGATACATCTCCAAATTCCGAATCATTCAGTGAGTTGTATATAGTTTGAATTTAAAACTGAAACATCAATGTTTTCAGAATGGTCAGAGTAATGCACAGTTGCACAGTTTCGAATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCSAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAATACAAAATTTCAAACCTCAAACTCATCAAACTTGCTGGAATCCGAAAATATTTCAGGTCCACTTGATATATATTCACAATCAGAAAAATTCAAAACTTTTTATAATTCATTCGGTTTACCACAAGATAGAAGTTTGTCATCTTTCTGGCCCAACGATAACAGAACATTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>496 322 91 68 23</canonical_bands>
                <polymorphic_bands>564 322 91 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGTTTCTTTCCAATTCTTGT</pcr_primer_p1>
		<pcr_primer_p2>GAAGTTTCTGGGAGATCTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>AAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTC</canonical_amplicon>
		<polymorphic_amplicon>AAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCSAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27654</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>276237</contig_pos>
        <strand>+</strand>
        <context>ATAATATCAA[A/T]AATAGTTTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAA</left_flank>
        <right_flank>AATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGAAAAAAAATGCTCACAAACCGTCGCCGTTGGGCTCAAAAATCTAACCGAGATGGTGCAATTGAGTAGATAGTGAATATTTCGATACATCTCCAAATTCCGAATCATTCAGTGAGTTGTATATAGTTTGAATTTAAAACTGAAACATCAATGTTTTCAGAATGGTCAGAGTAATGCACAGTTGCACAGTTTCGAATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAATACAAAATTTCAAACCTCAAACTCATCAAACTTGCTGGAATCCGAAAATATTTCAGGTCCACTTGATATATATTCACAATCAGAAAAATTCAAAACTTTTTATAATTCATTCGGTTTACCACAAGATAGAAGTTTGTCATCTTTCTGGCCCAACGATAACAGAACATTTGAAAACCTGAAAGTC</canonical>
            <polymorphic>AACGAAAAAAAATGCTCACAAACCGTCGCCGTTGGGCTCAAAAATCTAACCGAGATGGTGCAATTGAGTAGATAGTGAATATTTCGATACATCTCCAAATTCCGAATCATTCAGTGAGTTGTATATAGTTTGAATTTAAAACTGAAACATCAATGTTTTCAGAATGGTCAGAGTAATGCACAGTTGCACAGTTTCGAATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAWAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAATACAAAATTTCAAACCTCAAACTCATCAAACTTGCTGGAATCCGAAAATATTTCAGGTCCACTTGATATATATTCACAATCAGAAAAATTCAAAACTTTTTATAATTCATTCGGTTTACCACAAGATAGAAGTTTGTCATCTTTCTGGCCCAACGATAACAGAACATTTGAAAACCTGAAAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGTTTCTTTCCAATTCTTGT</pcr_primer_p1>
		<pcr_primer_p2>GAAGTTTCTGGGAGATCTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>AAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTC</canonical_amplicon>
		<polymorphic_amplicon>AAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAWAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27655</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>276255</contig_pos>
        <strand>+</strand>
        <context>TCGAGGTCAA[A/C]ATTTTGAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAA</left_flank>
        <right_flank>ATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAACCGTCGCCGTTGGGCTCAAAAATCTAACCGAGATGGTGCAATTGAGTAGATAGTGAATATTTCGATACATCTCCAAATTCCGAATCATTCAGTGAGTTGTATATAGTTTGAATTTAAAACTGAAACATCAATGTTTTCAGAATGGTCAGAGTAATGCACAGTTGCACAGTTTCGAATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAATACAAAATTTCAAACCTCAAACTCATCAAACTTGCTGGAATCCGAAAATATTTCAGGTCCACTTGATATATATTCACAATCAGAAAAATTCAAAACTTTTTATAATTCATTCGGTTTACCACAAGATAGAAGTTTGTCATCTTTCTGGCCCAACGATAACAGAACATTTGAAAACCTGAAAGTCGTTATAGAAAAATCAGAA</canonical>
            <polymorphic>CAAACCGTCGCCGTTGGGCTCAAAAATCTAACCGAGATGGTGCAATTGAGTAGATAGTGAATATTTCGATACATCTCCAAATTCCGAATCATTCAGTGAGTTGTATATAGTTTGAATTTAAAACTGAAACATCAATGTTTTCAGAATGGTCAGAGTAATGCACAGTTGCACAGTTTCGAATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAAMATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAATACAAAATTTCAAACCTCAAACTCATCAAACTTGCTGGAATCCGAAAATATTTCAGGTCCACTTGATATATATTCACAATCAGAAAAATTCAAAACTTTTTATAATTCATTCGGTTTACCACAAGATAGAAGTTTGTCATCTTTCTGGCCCAACGATAACAGAACATTTGAAAACCTGAAAGTCGTTATAGAAAAATCAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>503 309 188</canonical_bands>
                <polymorphic_bands>691 309</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>360 212 168 86 81 57 20 16</canonical_bands>
                <polymorphic_bands>528 212 86 81 57 20 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGTTTCTTTCCAATTCTTGT</pcr_primer_p1>
		<pcr_primer_p2>GAAGTTTCTGGGAGATCTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>AAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTC</canonical_amplicon>
		<polymorphic_amplicon>AAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAAMATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27656</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>276269</contig_pos>
        <strand>+</strand>
        <context>TTGAATTTTA[A/G]ATATTTCAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTA</left_flank>
        <right_flank>ATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGCTCAAAAATCTAACCGAGATGGTGCAATTGAGTAGATAGTGAATATTTCGATACATCTCCAAATTCCGAATCATTCAGTGAGTTGTATATAGTTTGAATTTAAAACTGAAACATCAATGTTTTCAGAATGGTCAGAGTAATGCACAGTTGCACAGTTTCGAATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAATACAAAATTTCAAACCTCAAACTCATCAAACTTGCTGGAATCCGAAAATATTTCAGGTCCACTTGATATATATTCACAATCAGAAAAATTCAAAACTTTTTATAATTCATTCGGTTTACCACAAGATAGAAGTTTGTCATCTTTCTGGCCCAACGATAACAGAACATTTGAAAACCTGAAAGTCGTTATAGAAAAATCAGAAATTTTGAAAGAAAA</canonical>
            <polymorphic>TGGGCTCAAAAATCTAACCGAGATGGTGCAATTGAGTAGATAGTGAATATTTCGATACATCTCCAAATTCCGAATCATTCAGTGAGTTGTATATAGTTTGAATTTAAAACTGAAACATCAATGTTTTCAGAATGGTCAGAGTAATGCACAGTTGCACAGTTTCGAATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTARATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAATACAAAATTTCAAACCTCAAACTCATCAAACTTGCTGGAATCCGAAAATATTTCAGGTCCACTTGATATATATTCACAATCAGAAAAATTCAAAACTTTTTATAATTCATTCGGTTTACCACAAGATAGAAGTTTGTCATCTTTCTGGCCCAACGATAACAGAACATTTGAAAACCTGAAAGTCGTTATAGAAAAATCAGAAATTTTGAAAGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGTTTCTTTCCAATTCTTGT</pcr_primer_p1>
		<pcr_primer_p2>GAAGTTTCTGGGAGATCTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>AAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTC</canonical_amplicon>
		<polymorphic_amplicon>AAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTARATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27657</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>276422</contig_pos>
        <strand>+</strand>
        <context>AGTTTCTATC[C/T]AACTCATMRT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATC</left_flank>
        <right_flank>AACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCACAGTTTCGAATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAATACAAAATTTCAAACCTCAAACTCATCAAACTTGCTGGAATCCGAAAATATTTCAGGTCCACTTGATATATATTCACAATCAGAAAAATTCAAAACTTTTTATAATTCATTCGGTTTACCACAAGATAGAAGTTTGTCATCTTTCTGGCCCAACGATAACAGAACATTTGAAAACCTGAAAGTCGTTATAGAAAAATCAGAAATTTTGAAAGAAAATTTGAGGGATTTCTACATTCCTTTAGAAACCTTGAATGTGATTTAACCTTGCTTCCAATATGATAAATTTTGCAAATTGTAGACAAATCCCAACAGTTCTTACCGTACCACATTCTGCTCCATTTTCAAGATAACGGGATTCTCGGGGAACCT</canonical>
            <polymorphic>GCACAGTTTCGAATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCYAACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAATACAAAATTTCAAACCTCAAACTCATCAAACTTGCTGGAATCCGAAAATATTTCAGGTCCACTTGATATATATTCACAATCAGAAAAATTCAAAACTTTTTATAATTCATTCGGTTTACCACAAGATAGAAGTTTGTCATCTTTCTGGCCCAACGATAACAGAACATTTGAAAACCTGAAAGTCGTTATAGAAAAATCAGAAATTTTGAAAGAAAATTTGAGGGATTTCTACATTCCTTTAGAAACCTTGAATGTGATTTAACCTTGCTTCCAATATGATAAATTTTGCAAATTGTAGACAAATCCCAACAGTTCTTACCGTACCACATTCTGCTCCATTTTCAAGATAACGGGATTCTCGGGGAACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAATATCCTCCGTTTCTATCA</pcr_primer_p1>
		<pcr_primer_p2>AGTTTGAGGTTTGAAATTTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAATACAAAATTTCAAACCTCAAACT</canonical_amplicon>
		<polymorphic_amplicon>TGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCYAACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAATACAAAATTTCAAACCTCAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27658</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>276430</contig_pos>
        <strand>+</strand>
        <context>TCYAACTCAT[A/C]RTAGGAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCAT</left_flank>
        <right_flank>ATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGAATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAATACAAAATTTCAAACCTCAAACTCATCAAACTTGCTGGAATCCGAAAATATTTCAGGTCCACTTGATATATATTCACAATCAGAAAAATTCAAAACTTTTTATAATTCATTCGGTTTACCACAAGATAGAAGTTTGTCATCTTTCTGGCCCAACGATAACAGAACATTTGAAAACCTGAAAGTCGTTATAGAAAAATCAGAAATTTTGAAAGAAAATTTGAGGGATTTCTACATTCCTTTAGAAACCTTGAATGTGATTTAACCTTGCTTCCAATATGATAAATTTTGCAAATTGTAGACAAATCCCAACAGTTCTTACCGTACCACATTCTGCTCCATTTTCAAGATAACGGGATTCTCGGGGAACCTGATGGCAT</canonical>
            <polymorphic>TCGAATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATMATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAATACAAAATTTCAAACCTCAAACTCATCAAACTTGCTGGAATCCGAAAATATTTCAGGTCCACTTGATATATATTCACAATCAGAAAAATTCAAAACTTTTTATAATTCATTCGGTTTACCACAAGATAGAAGTTTGTCATCTTTCTGGCCCAACGATAACAGAACATTTGAAAACCTGAAAGTCGTTATAGAAAAATCAGAAATTTTGAAAGAAAATTTGAGGGATTTCTACATTCCTTTAGAAACCTTGAATGTGATTTAACCTTGCTTCCAATATGATAAATTTTGCAAATTGTAGACAAATCCCAACAGTTCTTACCGTACCACATTCTGCTCCATTTTCAAGATAACGGGATTCTCGGGGAACCTGATGGCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAATATCCTCCGTTTCTATCA</pcr_primer_p1>
		<pcr_primer_p2>AGTTTGAGGTTTGAAATTTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAATACAAAATTTCAAACCTCAAACT</canonical_amplicon>
		<polymorphic_amplicon>TGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATMATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAATACAAAATTTCAAACCTCAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27659</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>276431</contig_pos>
        <strand>+</strand>
        <context>CYAACTCATM[A/G]TAGGAAAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATA</left_flank>
        <right_flank>TAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAATACAAAATTTCAAACCTCAAACTCATCAAACTTGCTGGAATCCGAAAATATTTCAGGTCCACTTGATATATATTCACAATCAGAAAAATTCAAAACTTTTTATAATTCATTCGGTTTACCACAAGATAGAAGTTTGTCATCTTTCTGGCCCAACGATAACAGAACATTTGAAAACCTGAAAGTCGTTATAGAAAAATCAGAAATTTTGAAAGAAAATTTGAGGGATTTCTACATTCCTTTAGAAACCTTGAATGTGATTTAACCTTGCTTCCAATATGATAAATTTTGCAAATTGTAGACAAATCCCAACAGTTCTTACCGTACCACATTCTGCTCCATTTTCAAGATAACGGGATTCTCGGGGAACCTGATGGCATT</canonical>
            <polymorphic>CGAATTCTTCAAAGCTTTCCTATGCAATTATCTGTTCACAGCGATTACAGTGGACGTATTTTTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATARTAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAATACAAAATTTCAAACCTCAAACTCATCAAACTTGCTGGAATCCGAAAATATTTCAGGTCCACTTGATATATATTCACAATCAGAAAAATTCAAAACTTTTTATAATTCATTCGGTTTACCACAAGATAGAAGTTTGTCATCTTTCTGGCCCAACGATAACAGAACATTTGAAAACCTGAAAGTCGTTATAGAAAAATCAGAAATTTTGAAAGAAAATTTGAGGGATTTCTACATTCCTTTAGAAACCTTGAATGTGATTTAACCTTGCTTCCAATATGATAAATTTTGCAAATTGTAGACAAATCCCAACAGTTCTTACCGTACCACATTCTGCTCCATTTTCAAGATAACGGGATTCTCGGGGAACCTGATGGCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAATATCCTCCGTTTCTATCA</pcr_primer_p1>
		<pcr_primer_p2>AGTTTGAGGTTTGAAATTTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAATACAAAATTTCAAACCTCAAACT</canonical_amplicon>
		<polymorphic_amplicon>TGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATARTAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAATACAAAATTTCAAACCTCAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27660</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>276492</contig_pos>
        <strand>+</strand>
        <context>ATTCTAGAAG[C/T]TATCATCCCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAG</left_flank>
        <right_flank>TATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAATACAAAATTTCAAACCTCAAACTCATCAAACTTGCTGGAATCCGAAAATATTTCAGGTCCACTTGATATATATTCACAATCAGAAAAATTCAAAACTTTTTATAATTCATTCGGTTTACCACAAGATAGAAGTTTGTCATCTTTCTGGCCCAACGATAACAGAACATTTGAAAACCTGAAAGTCGTTATAGAAAAATCAGAAATTTTGAAAGAAAATTTGAGGGATTTCTACATTCCTTTAGAAACCTTGAATGTGATTTAACCTTGCTTCCAATATGATAAATTTTGCAAATTGTAGACAAATCCCAACAGTTCTTACCGTACCACATTCTGCTCCATTTTCAAGATAACGGGATTCTCGGGGAACCTGATGGCATTTTTTTAATTATAAAATTATTCACTTATAAATATGTAAATCTTAAACCCAAGTAATTTTACT</canonical>
            <polymorphic>TTTAAAATTATTTTTGTGTGCGCTCAATTCACATTATAAAACACCAGAGCTATGTTTAACACAGTATCCGTTGACACCGTATTCGATGAGTACACTCAAAAATTTATCCCAATTGACATGGTTCTTCCCAATTGACATGGTCATTTCCAGTCGAAATGTTTCTTTCCAATTCTTGTTTTGAATGATCTCCATTCTCCATATCGTTTAATGATGTGAGCATAAAACTGGCCCAATATAATATCAAAAATAGTTTCGAGGTCAACATTTTGAATTTTAGATATTTCAAGTGAGAAGGGTCCCCTAAAAACTTGAAAAAAAAACCTAAGCTCCGAAGTGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGYTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAATACAAAATTTCAAACCTCAAACTCATCAAACTTGCTGGAATCCGAAAATATTTCAGGTCCACTTGATATATATTCACAATCAGAAAAATTCAAAACTTTTTATAATTCATTCGGTTTACCACAAGATAGAAGTTTGTCATCTTTCTGGCCCAACGATAACAGAACATTTGAAAACCTGAAAGTCGTTATAGAAAAATCAGAAATTTTGAAAGAAAATTTGAGGGATTTCTACATTCCTTTAGAAACCTTGAATGTGATTTAACCTTGCTTCCAATATGATAAATTTTGCAAATTGTAGACAAATCCCAACAGTTCTTACCGTACCACATTCTGCTCCATTTTCAAGATAACGGGATTCTCGGGGAACCTGATGGCATTTTTTTAATTATAAAATTATTCACTTATAAATATGTAAATCTTAAACCCAAGTAATTTTACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>501 277 173 49</canonical_bands>
                <polymorphic_bands>674 277 49</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>291 210 179 100 98 73 49</canonical_bands>
                <polymorphic_bands>310 291 179 98 73 49</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTAATATCCTCCGTTTCTATCA</pcr_primer_p1>
		<pcr_primer_p2>AGTTTGAGGTTTGAAATTTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGCTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAATACAAAATTTCAAACCTCAAACT</canonical_amplicon>
		<polymorphic_amplicon>TGTAATATCCTCCGTTTCTATCAAATGAGAAAGATCTCCCAGAAACTTCGAAAAAAATATTTCGGCTCTGAAGTGGAATATGCCCAGTTTCTATCCAACTCATAATAGGAAAATATATGCCCAGTTTCTATCCAATTCATCATAGGCATTTGGAGATTCTAGAAGYTATCATCCCTCACCAAAACGCTGATTAAAAATGAACAGTTTGGTTCGATAAGTGAAACGAATACAAAATTTCAAACCTCAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27661</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>278202</contig_pos>
        <strand>+</strand>
        <context>TTTCTTCTCT[C/T]TTTCCTCGGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATAAGATAAAAATTATTATTGGTCCCCAAGGTTTTCATTTTTCTTCTCT</left_flank>
        <right_flank>TTTCCTCGGCTCTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCGTTTGCCACTATCGTATGATCTTACATGTTAGATAGAAGATTGTTGGTCCCCAAGGTTCTGATCCATTCTTTCTCTGATGTTCTAGTTTCTTAAGATTTTGCTAATGTATTTTGACAAGAAAGAATCAGTTCCTTTGTATCCACTTCCTACGAAAGCGTAAAAAACAATCAGAATTTGCCATGTTTCTGGGGAAAAAACGTTGGAAAAGCTGAAAACCTGAAAGTCATTACGGGAACATTGGTGTTGACTGTAATTCAACCTTGTTTCCATAAGGGAAATGTAGCAAAATGCTGGCATATCGCAACAGTTCTTGCTGTACCACATTTTACTTCTATTCTCATTTATAGGGAAAACTTCTGAAATTACCAAATATTAAAGTTCTTTGCCAAATAATATAAACTTTCTTTCCAGCTCCCCCGTTTGCAACGCATCGCAGAGTCTTATAAATAAGATAAAAATTATTATTGGTCCCCAAGGTTTTCATTTTTCTTCTCTCTTTCCTCGGCTCTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACAC</canonical>
            <polymorphic>CCCGTTTGCCACTATCGTATGATCTTACATGTTAGATAGAAGATTGTTGGTCCCCAAGGTTCTGATCCATTCTTTCTCTGATGTTCTAGTTTCTTAAGATTTTGCTAATGTATTTTGACAAGAAAGAATCAGTTCCTTTGTATCCACTTCCTACGAAAGCGTAAAAAACAATCAGAATTTGCCATGTTTCTGGGGAAAAAACGTTGGAAAAGCTGAAAACCTGAAAGTCATTACGGGAACATTGGTGTTGACTGTAATTCAACCTTGTTTCCATAAGGGAAATGTAGCAAAATGCTGGCATATCGCAACAGTTCTTGCTGTACCACATTTTACTTCTATTCTCATTTATAGGGAAAACTTCTGAAATTACCAAATATTAAAGTTCTTTGCCAAATAATATAAACTTTCTTTCCAGCTCCCCCGTTTGCAACGCATCGCAGAGTCTTATAAATAAGATAAAAATTATTATTGGTCCCCAAGGTTTTCATTTTTCTTCTCTYTTTCCTCGGCTCTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTGCTGTACCACATTTTACTT</pcr_primer_p1>
		<pcr_primer_p2>GATCACATGTGTAATACATCAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TCTTGCTGTACCACATTTTACTTCTATTCTCATTTATAGGGAAAACTTCTGAAATTACCAAATATTAAAGTTCTTTGCCAAATAATATAAACTTTCTTTCCAGCTCCCCCGTTTGCAACGCATCGCAGAGTCTTATAAATAAGATAAAAATTATTATTGGTCCCCAAGGTTTTCATTTTTCTTCTCTCTTTCCTCGGCTCTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATC</canonical_amplicon>
		<polymorphic_amplicon>TCTTGCTGTACCACATTTTACTTCTATTCTCATTTATAGGGAAAACTTCTGAAATTACCAAATATTAAAGTTCTTTGCCAAATAATATAAACTTTCTTTCCAGCTCCCCCGTTTGCAACGCATCGCAGAGTCTTATAAATAAGATAAAAATTATTATTGGTCCCCAAGGTTTTCATTTTTCTTCTCTYTTTCCTCGGCTCTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27662</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>278261</contig_pos>
        <strand>+</strand>
        <context>ATGTGATCAC[A/G]AGTTCCGTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTCTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCAC</left_flank>
        <right_flank>AGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTT</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGATCCATTCTTTCTCTGATGTTCTAGTTTCTTAAGATTTTGCTAATGTATTTTGACAAGAAAGAATCAGTTCCTTTGTATCCACTTCCTACGAAAGCGTAAAAAACAATCAGAATTTGCCATGTTTCTGGGGAAAAAACGTTGGAAAAGCTGAAAACCTGAAAGTCATTACGGGAACATTGGTGTTGACTGTAATTCAACCTTGTTTCCATAAGGGAAATGTAGCAAAATGCTGGCATATCGCAACAGTTCTTGCTGTACCACATTTTACTTCTATTCTCATTTATAGGGAAAACTTCTGAAATTACCAAATATTAAAGTTCTTTGCCAAATAATATAAACTTTCTTTCCAGCTCCCCCGTTTGCAACGCATCGCAGAGTCTTATAAATAAGATAAAAATTATTATTGGTCCCCAAGGTTTTCATTTTTCTTCTCTCTTTCCTCGGCTCTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATC</canonical>
            <polymorphic>TTCTGATCCATTCTTTCTCTGATGTTCTAGTTTCTTAAGATTTTGCTAATGTATTTTGACAAGAAAGAATCAGTTCCTTTGTATCCACTTCCTACGAAAGCGTAAAAAACAATCAGAATTTGCCATGTTTCTGGGGAAAAAACGTTGGAAAAGCTGAAAACCTGAAAGTCATTACGGGAACATTGGTGTTGACTGTAATTCAACCTTGTTTCCATAAGGGAAATGTAGCAAAATGCTGGCATATCGCAACAGTTCTTGCTGTACCACATTTTACTTCTATTCTCATTTATAGGGAAAACTTCTGAAATTACCAAATATTAAAGTTCTTTGCCAAATAATATAAACTTTCTTTCCAGCTCCCCCGTTTGCAACGCATCGCAGAGTCTTATAAATAAGATAAAAATTATTATTGGTCCCCAAGGTTTTCATTTTTCTTCTCTCTTTCCTCGGCTCTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACRAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCCAAATAATATAAACTTTCTTTC</pcr_primer_p1>
		<pcr_primer_p2>CTCTGAACATCCACAACATCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGCCAAATAATATAAACTTTCTTTCCAGCTCCCCCGTTTGCAACGCATCGCAGAGTCTTATAAATAAGATAAAAATTATTATTGGTCCCCAAGGTTTTCATTTTTCTTCTCTCTTTCCTCGGCTCTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAG</canonical_amplicon>
		<polymorphic_amplicon>TGCCAAATAATATAAACTTTCTTTCCAGCTCCCCCGTTTGCAACGCATCGCAGAGTCTTATAAATAAGATAAAAATTATTATTGGTCCCCAAGGTTTTCATTTTTCTTCTCTCTTTCCTCGGCTCTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACRAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27663</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>278275</contig_pos>
        <strand>+</strand>
        <context>TCCGTCACAT[C/T]CTCTTCCTAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACAT</left_flank>
        <right_flank>CTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTCTGATGTTCTAGTTTCTTAAGATTTTGCTAATGTATTTTGACAAGAAAGAATCAGTTCCTTTGTATCCACTTCCTACGAAAGCGTAAAAAACAATCAGAATTTGCCATGTTTCTGGGGAAAAAACGTTGGAAAAGCTGAAAACCTGAAAGTCATTACGGGAACATTGGTGTTGACTGTAATTCAACCTTGTTTCCATAAGGGAAATGTAGCAAAATGCTGGCATATCGCAACAGTTCTTGCTGTACCACATTTTACTTCTATTCTCATTTATAGGGAAAACTTCTGAAATTACCAAATATTAAAGTTCTTTGCCAAATAATATAAACTTTCTTTCCAGCTCCCCCGTTTGCAACGCATCGCAGAGTCTTATAAATAAGATAAAAATTATTATTGGTCCCCAAGGTTTTCATTTTTCTTCTCTCTTTCCTCGGCTCTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGC</canonical>
            <polymorphic>TTCTCTGATGTTCTAGTTTCTTAAGATTTTGCTAATGTATTTTGACAAGAAAGAATCAGTTCCTTTGTATCCACTTCCTACGAAAGCGTAAAAAACAATCAGAATTTGCCATGTTTCTGGGGAAAAAACGTTGGAAAAGCTGAAAACCTGAAAGTCATTACGGGAACATTGGTGTTGACTGTAATTCAACCTTGTTTCCATAAGGGAAATGTAGCAAAATGCTGGCATATCGCAACAGTTCTTGCTGTACCACATTTTACTTCTATTCTCATTTATAGGGAAAACTTCTGAAATTACCAAATATTAAAGTTCTTTGCCAAATAATATAAACTTTCTTTCCAGCTCCCCCGTTTGCAACGCATCGCAGAGTCTTATAAATAAGATAAAAATTATTATTGGTCCCCAAGGTTTTCATTTTTCTTCTCTCTTTCCTCGGCTCTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATYCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTGAGCTTCTTGAACTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CACATTGAACCGAAACATAGTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTG</canonical_amplicon>
		<polymorphic_amplicon>CTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATYCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27664</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>278344</contig_pos>
        <strand>+</strand>
        <context>TTCAGAGAAA[A/T]AATCATATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAA</left_flank>
        <right_flank>AATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCACTTCCTACGAAAGCGTAAAAAACAATCAGAATTTGCCATGTTTCTGGGGAAAAAACGTTGGAAAAGCTGAAAACCTGAAAGTCATTACGGGAACATTGGTGTTGACTGTAATTCAACCTTGTTTCCATAAGGGAAATGTAGCAAAATGCTGGCATATCGCAACAGTTCTTGCTGTACCACATTTTACTTCTATTCTCATTTATAGGGAAAACTTCTGAAATTACCAAATATTAAAGTTCTTTGCCAAATAATATAAACTTTCTTTCCAGCTCCCCCGTTTGCAACGCATCGCAGAGTCTTATAAATAAGATAAAAATTATTATTGGTCCCCAAGGTTTTCATTTTTCTTCTCTCTTTCCTCGGCTCTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTT</canonical>
            <polymorphic>TCCACTTCCTACGAAAGCGTAAAAAACAATCAGAATTTGCCATGTTTCTGGGGAAAAAACGTTGGAAAAGCTGAAAACCTGAAAGTCATTACGGGAACATTGGTGTTGACTGTAATTCAACCTTGTTTCCATAAGGGAAATGTAGCAAAATGCTGGCATATCGCAACAGTTCTTGCTGTACCACATTTTACTTCTATTCTCATTTATAGGGAAAACTTCTGAAATTACCAAATATTAAAGTTCTTTGCCAAATAATATAAACTTTCTTTCCAGCTCCCCCGTTTGCAACGCATCGCAGAGTCTTATAAATAAGATAAAAATTATTATTGGTCCCCAAGGTTTTCATTTTTCTTCTCTCTTTCCTCGGCTCTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAWAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTGAGCTTCTTGAACTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CACATTGAACCGAAACATAGTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTG</canonical_amplicon>
		<polymorphic_amplicon>CTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAWAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27665</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>278362</contig_pos>
        <strand>+</strand>
        <context>TTTTACGAGT[A/C]GAAATAACGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGT</left_flank>
        <right_flank>GAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAAAAAACAATCAGAATTTGCCATGTTTCTGGGGAAAAAACGTTGGAAAAGCTGAAAACCTGAAAGTCATTACGGGAACATTGGTGTTGACTGTAATTCAACCTTGTTTCCATAAGGGAAATGTAGCAAAATGCTGGCATATCGCAACAGTTCTTGCTGTACCACATTTTACTTCTATTCTCATTTATAGGGAAAACTTCTGAAATTACCAAATATTAAAGTTCTTTGCCAAATAATATAAACTTTCTTTCCAGCTCCCCCGTTTGCAACGCATCGCAGAGTCTTATAAATAAGATAAAAATTATTATTGGTCCCCAAGGTTTTCATTTTTCTTCTCTCTTTCCTCGGCTCTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACG</canonical>
            <polymorphic>GTAAAAAACAATCAGAATTTGCCATGTTTCTGGGGAAAAAACGTTGGAAAAGCTGAAAACCTGAAAGTCATTACGGGAACATTGGTGTTGACTGTAATTCAACCTTGTTTCCATAAGGGAAATGTAGCAAAATGCTGGCATATCGCAACAGTTCTTGCTGTACCACATTTTACTTCTATTCTCATTTATAGGGAAAACTTCTGAAATTACCAAATATTAAAGTTCTTTGCCAAATAATATAAACTTTCTTTCCAGCTCCCCCGTTTGCAACGCATCGCAGAGTCTTATAAATAAGATAAAAATTATTATTGGTCCCCAAGGTTTTCATTTTTCTTCTCTCTTTCCTCGGCTCTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTMGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 231 114 69 68 18</canonical_bands>
                <polymorphic_bands>614 231 69 68 18</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>280 224 216 213 67</canonical_bands>
                <polymorphic_bands>440 280 213 67</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTGAGCTTCTTGAACTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CACATTGAACCGAAACATAGTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTG</canonical_amplicon>
		<polymorphic_amplicon>CTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTMGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27666</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>278399</contig_pos>
        <strand>+</strand>
        <context>TCTCATGTTT[G/T]CATTGGGAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTT</left_flank>
        <right_flank>CATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACGTTGGAAAAGCTGAAAACCTGAAAGTCATTACGGGAACATTGGTGTTGACTGTAATTCAACCTTGTTTCCATAAGGGAAATGTAGCAAAATGCTGGCATATCGCAACAGTTCTTGCTGTACCACATTTTACTTCTATTCTCATTTATAGGGAAAACTTCTGAAATTACCAAATATTAAAGTTCTTTGCCAAATAATATAAACTTTCTTTCCAGCTCCCCCGTTTGCAACGCATCGCAGAGTCTTATAAATAAGATAAAAATTATTATTGGTCCCCAAGGTTTTCATTTTTCTTCTCTCTTTCCTCGGCTCTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACGAACAACTATAAGAAATTCCGCTTAAAAAATTACCAGC</canonical>
            <polymorphic>AAAACGTTGGAAAAGCTGAAAACCTGAAAGTCATTACGGGAACATTGGTGTTGACTGTAATTCAACCTTGTTTCCATAAGGGAAATGTAGCAAAATGCTGGCATATCGCAACAGTTCTTGCTGTACCACATTTTACTTCTATTCTCATTTATAGGGAAAACTTCTGAAATTACCAAATATTAAAGTTCTTTGCCAAATAATATAAACTTTCTTTCCAGCTCCCCCGTTTGCAACGCATCGCAGAGTCTTATAAATAAGATAAAAATTATTATTGGTCCCCAAGGTTTTCATTTTTCTTCTCTCTTTCCTCGGCTCTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTKCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACGAACAACTATAAGAAATTCCGCTTAAAAAATTACCAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTGAGCTTCTTGAACTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CACATTGAACCGAAACATAGTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTG</canonical_amplicon>
		<polymorphic_amplicon>CTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTKCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27667</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>278419</contig_pos>
        <strand>+</strand>
        <context>CTTTCTATCC[G/T]GCGCCTTGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCC</left_flank>
        <right_flank>GCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCTGAAAGTCATTACGGGAACATTGGTGTTGACTGTAATTCAACCTTGTTTCCATAAGGGAAATGTAGCAAAATGCTGGCATATCGCAACAGTTCTTGCTGTACCACATTTTACTTCTATTCTCATTTATAGGGAAAACTTCTGAAATTACCAAATATTAAAGTTCTTTGCCAAATAATATAAACTTTCTTTCCAGCTCCCCCGTTTGCAACGCATCGCAGAGTCTTATAAATAAGATAAAAATTATTATTGGTCCCCAAGGTTTTCATTTTTCTTCTCTCTTTCCTCGGCTCTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACGAACAACTATAAGAAATTCCGCTTAAAAAATTACCAGCCTTGGGGCGGGATTGGTGAT</canonical>
            <polymorphic>AACCTGAAAGTCATTACGGGAACATTGGTGTTGACTGTAATTCAACCTTGTTTCCATAAGGGAAATGTAGCAAAATGCTGGCATATCGCAACAGTTCTTGCTGTACCACATTTTACTTCTATTCTCATTTATAGGGAAAACTTCTGAAATTACCAAATATTAAAGTTCTTTGCCAAATAATATAAACTTTCTTTCCAGCTCCCCCGTTTGCAACGCATCGCAGAGTCTTATAAATAAGATAAAAATTATTATTGGTCCCCAAGGTTTTCATTTTTCTTCTCTCTTTCCTCGGCTCTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCKGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACGAACAACTATAAGAAATTCCGCTTAAAAAATTACCAGCCTTGGGGCGGGATTGGTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTTCCTACGAAAACCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATATATTAGCAACAAATCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>220</pcr_amplicon_size>
		<canonical_amplicon>CTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATT</canonical_amplicon>
		<polymorphic_amplicon>CTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCKGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27668</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>278442</contig_pos>
        <strand>+</strand>
        <context>TCATTAGATT[C/T]GTACTATGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATT</left_flank>
        <right_flank>GTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGGTGTTGACTGTAATTCAACCTTGTTTCCATAAGGGAAATGTAGCAAAATGCTGGCATATCGCAACAGTTCTTGCTGTACCACATTTTACTTCTATTCTCATTTATAGGGAAAACTTCTGAAATTACCAAATATTAAAGTTCTTTGCCAAATAATATAAACTTTCTTTCCAGCTCCCCCGTTTGCAACGCATCGCAGAGTCTTATAAATAAGATAAAAATTATTATTGGTCCCCAAGGTTTTCATTTTTCTTCTCTCTTTCCTCGGCTCTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACGAACAACTATAAGAAATTCCGCTTAAAAAATTACCAGCCTTGGGGCGGGATTGGTGATGTAAGCGACTGAAAAGAGCTTCA</canonical>
            <polymorphic>ATTGGTGTTGACTGTAATTCAACCTTGTTTCCATAAGGGAAATGTAGCAAAATGCTGGCATATCGCAACAGTTCTTGCTGTACCACATTTTACTTCTATTCTCATTTATAGGGAAAACTTCTGAAATTACCAAATATTAAAGTTCTTTGCCAAATAATATAAACTTTCTTTCCAGCTCCCCCGTTTGCAACGCATCGCAGAGTCTTATAAATAAGATAAAAATTATTATTGGTCCCCAAGGTTTTCATTTTTCTTCTCTCTTTCCTCGGCTCTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTYGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACGAACAACTATAAGAAATTCCGCTTAAAAAATTACCAGCCTTGGGGCGGGATTGGTGATGTAAGCGACTGAAAAGAGCTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTTGTGGATGTTCAGAGAA</pcr_primer_p1>
		<pcr_primer_p2>GGAGTCTAGAGAAAAATAGCTGTAA</pcr_primer_p2>
		<pcr_amplicon_size>266</pcr_amplicon_size>
		<canonical_amplicon>ATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCC</canonical_amplicon>
		<polymorphic_amplicon>ATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTYGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27669</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>278554</contig_pos>
        <strand></strand>
        <context>AAATTAATTG[G/A]RGTCTATATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTG</left_flank>
        <right_flank>GGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAACTTCTGAAATTACCAAATATTAAAGTTCTTTGCCAAATAATATAAACTTTCTTTCCAGCTCCCCCGTTTGCAACGCATCGCAGAGTCTTATAAATAAGATAAAAATTATTATTGGTCCCCAAGGTTTTCATTTTTCTTCTCTCTTTCCTCGGCTCTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACGAACAACTATAAGAAATTCCGCTTAAAAAATTACCAGCCTTGGGGCGGGATTGGTGATGTAAGCGACTGAAAAGAGCTTCATAAGATGACTATTTTTTAGTGGGATTTTGAATTCCAGTTGTTCATTAAACACGATTGCGGCCTCGAAATCACCGACGAGTTGCAAATCGTGAGATTGTCGTTTGGACAATTT</canonical>
            <polymorphic>GAAAACTTCTGAAATTACCAAATATTAAAGTTCTTTGCCAAATAATATAAACTTTCTTTCCAGCTCCCCCGTTTGCAACGCATCGCAGAGTCTTATAAATAAGATAAAAATTATTATTGGTCCCCAAGGTTTTCATTTTTCTTCTCTCTTTCCTCGGCTCTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGRGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACGAACAACTATAAGAAATTCCGCTTAAAAAATTACCAGCCTTGGGGCGGGATTGGTGATGTAAGCGACTGAAAAGAGCTTCATAAGATGACTATTTTTTAGTGGGATTTTGAATTCCAGTTGTTCATTAAACACGATTGCGGCCTCGAAATCACCGACGAGTTGCAAATCGTGAGATTGTCGTTTGGACAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCCTTGTTTCTCATTAGATT</pcr_primer_p1>
		<pcr_primer_p2>ATGGAGAGCACAAGAGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCAT</canonical_amplicon>
		<polymorphic_amplicon>CGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGRGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27670</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>278555</contig_pos>
        <strand>+</strand>
        <context>AATTAATTGR[A/G]GTCTATATTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGG</left_flank>
        <right_flank>GTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACTTCTGAAATTACCAAATATTAAAGTTCTTTGCCAAATAATATAAACTTTCTTTCCAGCTCCCCCGTTTGCAACGCATCGCAGAGTCTTATAAATAAGATAAAAATTATTATTGGTCCCCAAGGTTTTCATTTTTCTTCTCTCTTTCCTCGGCTCTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACGAACAACTATAAGAAATTCCGCTTAAAAAATTACCAGCCTTGGGGCGGGATTGGTGATGTAAGCGACTGAAAAGAGCTTCATAAGATGACTATTTTTTAGTGGGATTTTGAATTCCAGTTGTTCATTAAACACGATTGCGGCCTCGAAATCACCGACGAGTTGCAAATCGTGAGATTGTCGTTTGGACAATTTT</canonical>
            <polymorphic>AAAACTTCTGAAATTACCAAATATTAAAGTTCTTTGCCAAATAATATAAACTTTCTTTCCAGCTCCCCCGTTTGCAACGCATCGCAGAGTCTTATAAATAAGATAAAAATTATTATTGGTCCCCAAGGTTTTCATTTTTCTTCTCTCTTTCCTCGGCTCTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGRGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACGAACAACTATAAGAAATTCCGCTTAAAAAATTACCAGCCTTGGGGCGGGATTGGTGATGTAAGCGACTGAAAAGAGCTTCATAAGATGACTATTTTTTAGTGGGATTTTGAATTCCAGTTGTTCATTAAACACGATTGCGGCCTCGAAATCACCGACGAGTTGCAAATCGTGAGATTGTCGTTTGGACAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCCTTGTTTCTCATTAGATT</pcr_primer_p1>
		<pcr_primer_p2>ATGGAGAGCACAAGAGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCAT</canonical_amplicon>
		<polymorphic_amplicon>CGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGRGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27671</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>278628</contig_pos>
        <strand>+</strand>
        <context>TTTTCACTCT[C/G]TTATATCTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCT</left_flank>
        <right_flank>TTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAACGCATCGCAGAGTCTTATAAATAAGATAAAAATTATTATTGGTCCCCAAGGTTTTCATTTTTCTTCTCTCTTTCCTCGGCTCTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACGAACAACTATAAGAAATTCCGCTTAAAAAATTACCAGCCTTGGGGCGGGATTGGTGATGTAAGCGACTGAAAAGAGCTTCATAAGATGACTATTTTTTAGTGGGATTTTGAATTCCAGTTGTTCATTAAACACGATTGCGGCCTCGAAATCACCGACGAGTTGCAAATCGTGAGATTGTCGTTTGGACAATTTTCTACAACGACACAGTGAGTTCATATTTTTCTGTCGTAAACTGCAAAAACATTTCTGAAGGTACTTTCGAAAAG</canonical>
            <polymorphic>GCAACGCATCGCAGAGTCTTATAAATAAGATAAAAATTATTATTGGTCCCCAAGGTTTTCATTTTTCTTCTCTCTTTCCTCGGCTCTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTSTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACGAACAACTATAAGAAATTCCGCTTAAAAAATTACCAGCCTTGGGGCGGGATTGGTGATGTAAGCGACTGAAAAGAGCTTCATAAGATGACTATTTTTTAGTGGGATTTTGAATTCCAGTTGTTCATTAAACACGATTGCGGCCTCGAAATCACCGACGAGTTGCAAATCGTGAGATTGTCGTTTGGACAATTTTCTACAACGACACAGTGAGTTCATATTTTTCTGTCGTAAACTGCAAAAACATTTCTGAAGGTACTTTCGAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTCTAGACTCCTTCTACCTTA</pcr_primer_p1>
		<pcr_primer_p2>TACAGTATTGAATGTGCTGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTSTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27672</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>278690</contig_pos>
        <strand>+</strand>
        <context>GCTCGCAGCT[A/G]TGGTTCCAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCT</left_flank>
        <right_flank>TGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCTTCTCTCTTTCCTCGGCTCTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACGAACAACTATAAGAAATTCCGCTTAAAAAATTACCAGCCTTGGGGCGGGATTGGTGATGTAAGCGACTGAAAAGAGCTTCATAAGATGACTATTTTTTAGTGGGATTTTGAATTCCAGTTGTTCATTAAACACGATTGCGGCCTCGAAATCACCGACGAGTTGCAAATCGTGAGATTGTCGTTTGGACAATTTTCTACAACGACACAGTGAGTTCATATTTTTCTGTCGTAAACTGCAAAAACATTTCTGAAGGTACTTTCGAAAAGAGGTCAAAATCGACCTCAGCAAAAATACCACCGAAATTTTGATTCGGAGCGACTGGGACTGA</canonical>
            <polymorphic>TTTTCTTCTCTCTTTCCTCGGCTCTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTRTGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACGAACAACTATAAGAAATTCCGCTTAAAAAATTACCAGCCTTGGGGCGGGATTGGTGATGTAAGCGACTGAAAAGAGCTTCATAAGATGACTATTTTTTAGTGGGATTTTGAATTCCAGTTGTTCATTAAACACGATTGCGGCCTCGAAATCACCGACGAGTTGCAAATCGTGAGATTGTCGTTTGGACAATTTTCTACAACGACACAGTGAGTTCATATTTTTCTGTCGTAAACTGCAAAAACATTTCTGAAGGTACTTTCGAAAAGAGGTCAAAATCGACCTCAGCAAAAATACCACCGAAATTTTGATTCGGAGCGACTGGGACTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTAGAATGCGTCTTTCTCTT</pcr_primer_p1>
		<pcr_primer_p2>TTAAGCGGAATTTCTTATAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACGAACAACTATAAGAAATTCCGCTTAA</canonical_amplicon>
		<polymorphic_amplicon>GTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTRTGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACGAACAACTATAAGAAATTCCGCTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27673</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>278707</contig_pos>
        <strand>+</strand>
        <context>CAACACGCCT[C/T]GATATCATCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCT</left_flank>
        <right_flank>GATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGGCTCTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACGAACAACTATAAGAAATTCCGCTTAAAAAATTACCAGCCTTGGGGCGGGATTGGTGATGTAAGCGACTGAAAAGAGCTTCATAAGATGACTATTTTTTAGTGGGATTTTGAATTCCAGTTGTTCATTAAACACGATTGCGGCCTCGAAATCACCGACGAGTTGCAAATCGTGAGATTGTCGTTTGGACAATTTTCTACAACGACACAGTGAGTTCATATTTTTCTGTCGTAAACTGCAAAAACATTTCTGAAGGTACTTTCGAAAAGAGGTCAAAATCGACCTCAGCAAAAATACCACCGAAATTTTGATTCGGAGCGACTGGGACTGAATTCGGATTCATTCAGT</canonical>
            <polymorphic>TCGGCTCTTTGAGCTTCTTGAACTTTTTTCTGATGTATTACACATGTGATCACAAGTTCCGTCACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTYGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACGAACAACTATAAGAAATTCCGCTTAAAAAATTACCAGCCTTGGGGCGGGATTGGTGATGTAAGCGACTGAAAAGAGCTTCATAAGATGACTATTTTTTAGTGGGATTTTGAATTCCAGTTGTTCATTAAACACGATTGCGGCCTCGAAATCACCGACGAGTTGCAAATCGTGAGATTGTCGTTTGGACAATTTTCTACAACGACACAGTGAGTTCATATTTTTCTGTCGTAAACTGCAAAAACATTTCTGAAGGTACTTTCGAAAAGAGGTCAAAATCGACCTCAGCAAAAATACCACCGAAATTTTGATTCGGAGCGACTGGGACTGAATTCGGATTCATTCAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>231 212 155 116 114 69 68 18 17</canonical_bands>
                <polymorphic_bands>249 212 155 116 114 69 68 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTAGAATGCGTCTTTCTCTT</pcr_primer_p1>
		<pcr_primer_p2>TTAAGCGGAATTTCTTATAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACGAACAACTATAAGAAATTCCGCTTAA</canonical_amplicon>
		<polymorphic_amplicon>GTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTYGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACGAACAACTATAAGAAATTCCGCTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27674</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>278770</contig_pos>
        <strand>+</strand>
        <context>TCCACATATT[A/C]GATGCGTAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATT</left_flank>
        <right_flank>GATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACGAACAACTATAAGAAATTCCGCTTAAAAAATTACCAGCCTTGGGGCGGGATTGGTGATGTAAGCGACTGAAAAGAGCTTCATAAGATGACTATTTTTTAGTGGGATTTTGAATTCCAGTTGTTCATTAAACACGATTGCGGCCTCGAAATCACCGACGAGTTGCAAATCGTGAGATTGTCGTTTGGACAATTTTCTACAACGACACAGTGAGTTCATATTTTTCTGTCGTAAACTGCAAAAACATTTCTGAAGGTACTTTCGAAAAGAGGTCAAAATCGACCTCAGCAAAAATACCACCGAAATTTTGATTCGGAGCGACTGGGACTGAATTCGGATTCATTCAGTGAGTTTTACACAATTTGAATCGAAGACTGAAATTCATCTCTTTTCAGATATGTCAATGCACAC</canonical>
            <polymorphic>ACATCCTCTTCCTACGAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTMGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACGAACAACTATAAGAAATTCCGCTTAAAAAATTACCAGCCTTGGGGCGGGATTGGTGATGTAAGCGACTGAAAAGAGCTTCATAAGATGACTATTTTTTAGTGGGATTTTGAATTCCAGTTGTTCATTAAACACGATTGCGGCCTCGAAATCACCGACGAGTTGCAAATCGTGAGATTGTCGTTTGGACAATTTTCTACAACGACACAGTGAGTTCATATTTTTCTGTCGTAAACTGCAAAAACATTTCTGAAGGTACTTTCGAAAAGAGGTCAAAATCGACCTCAGCAAAAATACCACCGAAATTTTGATTCGGAGCGACTGGGACTGAATTCGGATTCATTCAGTGAGTTTTACACAATTTGAATCGAAGACTGAAATTCATCTCTTTTCAGATATGTCAATGCACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTAGAATGCGTCTTTCTCTT</pcr_primer_p1>
		<pcr_primer_p2>TTAAGCGGAATTTCTTATAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACGAACAACTATAAGAAATTCCGCTTAA</canonical_amplicon>
		<polymorphic_amplicon>GTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTMGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACGAACAACTATAAGAAATTCCGCTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27675</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>278785</contig_pos>
        <strand>+</strand>
        <context>CGTAAGTTAT[A/T]RCATTAGTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTAT</left_flank>
        <right_flank>ACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACGAACAACTATAAGAAATTCCGCTTAAAAAATTACCAGCCTTGGGGCGGGATTGGTGATGTAAGCGACTGAAAAGAGCTTCATAAGATGACTATTTTTTAGTGGGATTTTGAATTCCAGTTGTTCATTAAACACGATTGCGGCCTCGAAATCACCGACGAGTTGCAAATCGTGAGATTGTCGTTTGGACAATTTTCTACAACGACACAGTGAGTTCATATTTTTCTGTCGTAAACTGCAAAAACATTTCTGAAGGTACTTTCGAAAAGAGGTCAAAATCGACCTCAGCAAAAATACCACCGAAATTTTGATTCGGAGCGACTGGGACTGAATTCGGATTCATTCAGTGAGTTTTACACAATTTGAATCGAAGACTGAAATTCATCTCTTTTCAGATATGTCAATGCACACTTGCAAACTGTCTTA</canonical>
            <polymorphic>GAAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATWACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACGAACAACTATAAGAAATTCCGCTTAAAAAATTACCAGCCTTGGGGCGGGATTGGTGATGTAAGCGACTGAAAAGAGCTTCATAAGATGACTATTTTTTAGTGGGATTTTGAATTCCAGTTGTTCATTAAACACGATTGCGGCCTCGAAATCACCGACGAGTTGCAAATCGTGAGATTGTCGTTTGGACAATTTTCTACAACGACACAGTGAGTTCATATTTTTCTGTCGTAAACTGCAAAAACATTTCTGAAGGTACTTTCGAAAAGAGGTCAAAATCGACCTCAGCAAAAATACCACCGAAATTTTGATTCGGAGCGACTGGGACTGAATTCGGATTCATTCAGTGAGTTTTACACAATTTGAATCGAAGACTGAAATTCATCTCTTTTCAGATATGTCAATGCACACTTGCAAACTGTCTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTAGAATGCGTCTTTCTCTT</pcr_primer_p1>
		<pcr_primer_p2>TTAAGCGGAATTTCTTATAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACGAACAACTATAAGAAATTCCGCTTAA</canonical_amplicon>
		<polymorphic_amplicon>GTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATWACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACGAACAACTATAAGAAATTCCGCTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27676</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>278786</contig_pos>
        <strand>+</strand>
        <context>GTAAGTTATW[A/G]CATTAGTCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATA</left_flank>
        <right_flank>CATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACGAACAACTATAAGAAATTCCGCTTAAAAAATTACCAGCCTTGGGGCGGGATTGGTGATGTAAGCGACTGAAAAGAGCTTCATAAGATGACTATTTTTTAGTGGGATTTTGAATTCCAGTTGTTCATTAAACACGATTGCGGCCTCGAAATCACCGACGAGTTGCAAATCGTGAGATTGTCGTTTGGACAATTTTCTACAACGACACAGTGAGTTCATATTTTTCTGTCGTAAACTGCAAAAACATTTCTGAAGGTACTTTCGAAAAGAGGTCAAAATCGACCTCAGCAAAAATACCACCGAAATTTTGATTCGGAGCGACTGGGACTGAATTCGGATTCATTCAGTGAGTTTTACACAATTTGAATCGAAGACTGAAATTCATCTCTTTTCAGATATGTCAATGCACACTTGCAAACTGTCTTAT</canonical>
            <polymorphic>AAAACCTAAAAAAATTCAAAGTGTTTTGTGGGCAGATGTTGTGGATGTTCAGAGAAAAAATCATATTTTACGAGTCGAAATAACGTGATGGTTGGGTCGGCATCTCATGTTTTCATTGGGAGCTTTCTATCCTGCGCCTTGTTTCTCATTAGATTTGTACTATGTTTCGGTTCAATGTGCCACAATTTTCGATTTGTTGCTAATATATTATAGGAAGAGAAACGTATTTTATATCTCTGTTTTTTTTGAATTCTCAAAAATTAATTGGGGTCTATATTACAGCTATTTTTCTCTAGACTCCTTCTACCTTACATTCAGCGCCATTCACAATTTTTCACTCTGTTATATCTTGTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATARCATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACGAACAACTATAAGAAATTCCGCTTAAAAAATTACCAGCCTTGGGGCGGGATTGGTGATGTAAGCGACTGAAAAGAGCTTCATAAGATGACTATTTTTTAGTGGGATTTTGAATTCCAGTTGTTCATTAAACACGATTGCGGCCTCGAAATCACCGACGAGTTGCAAATCGTGAGATTGTCGTTTGGACAATTTTCTACAACGACACAGTGAGTTCATATTTTTCTGTCGTAAACTGCAAAAACATTTCTGAAGGTACTTTCGAAAAGAGGTCAAAATCGACCTCAGCAAAAATACCACCGAAATTTTGATTCGGAGCGACTGGGACTGAATTCGGATTCATTCAGTGAGTTTTACACAATTTGAATCGAAGACTGAAATTCATCTCTTTTCAGATATGTCAATGCACACTTGCAAACTGTCTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTAGAATGCGTCTTTCTCTT</pcr_primer_p1>
		<pcr_primer_p2>TTAAGCGGAATTTCTTATAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATAACATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACGAACAACTATAAGAAATTCCGCTTAA</canonical_amplicon>
		<polymorphic_amplicon>GTTTAGAATGCGTCTTTCTCTTGTGCTCTCCATCTTCGGGATGCTCGCAGCTATGGTTCCAACACGCCTCGATATCATCGGCACCATCGAATGTCAAGCTGCCCCTCCCTGGTGCTATACCATCCACATATTAGATGCGTAAGTTATARCATTAGTCGAATCATTCTATCTTTTTTCAGCACATTCAATACTGTAGCTAACAGTTTTTCCGCTTGCGAACTCACGAACAACTATAAGAAATTCCGCTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27677</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>305137</contig_pos>
        <strand>+</strand>
        <context>TCAAAATTTA[A/G]TAAATCTTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCTACACTCCAAAACACAAAATAGGAAAACTGAAATATTCAAAATTTA</left_flank>
        <right_flank>TAAATCTTAATTCTAAAATTTCGAATTTCGGAAAGTCAGAAATTTTGAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGATGATCATCTTTTGGCTCCGCCCACTGTAGGCAAGTCAAGAAAACAACAGTAACCCAATTATAGGATTTTCTCCAAGGTAATTTAATAATGTTTTCAATCCACCTAAATTTGAACCATCTGTTTACTGTTCACTCTTGCAGCTCCGCTCATCGTGGCATATCAAGGAAACAACATTGACTCAATTATGGGATTTTCTTCACGGCAATCCACACCTAATTATGATATTTGCTCCACGATAATTTGTTATTGTTTTCGGACCACCTAAATTAGATCCATCTCTTGTTCACTCTTTCCATTGAAAGCAGATGGTCAAGAGATTATGTCAAAGCGTGCCAGGTAGCAGTGTGAGCAGTTTCTCTAATTGTCGGAAACAAAGCTCAAGAAAATCATTTCGAGGAATTTAAATTCAAAAATCGAGAAGTTTGAAAAATCGAAAATTCAATATTCCTACACTCCAAAACACAAAATAGGAAAACTGAAATATTCAAAATTTAGTAAATCTTAATTCTAAAATTTCGAATTTCGGAAAGTCAGAAATTTTGAATTGGAAGATTCACAATTCTGAAACTCCTTAATTCTATAATAAATCTATAAATGTTATATTCAAAAGTTTAAAACTCAATGATCAACTGTCTTATTCAAAGATTTCAACGTCCAATCAGTGATAAAAAAATAAATGGAAAAATGTACCTTTTTTTTTTTTTCTTTTATTCTTTGAATGTAATTCTGTTTCCGTAGAGGAAAAATCAGTCAGATGATATTTACCCTGCTATCAGATGGTTGTGCCTGAAAGGTCTGGATCAGAATTAGAAAACTGTGTATTCAATTTTCAGATTTCCCAAATCGACATATATTTAAATTAGAGAGCTTTCTACAAACGTTTATGCAGATGAATTAGTTTATTTAGAAATCAGAAAATATTTGGCAGGCTAAGATTTACATTCCTGGGAGGTTATTGTAAAGCTTATTGCATCCACTGGTGACAAATTCTTGAG</canonical>
            <polymorphic>ATTGATGATCATCTTTTGGCTCCGCCCACTGTAGGCAAGTCAAGAAAACAACAGTAACCCAATTATAGGATTTTCTCCAAGGTAATTTAATAATGTTTTCAATCCACCTAAATTTGAACCATCTGTTTACTGTTCACTCTTGCAGCTCCGCTCATCGTGGCATATCAAGGAAACAACATTGACTCAATTATGGGATTTTCTTCACGGCAATCCACACCTAATTATGATATTTGCTCCACGATAATTTGTTATTGTTTTCGGACCACCTAAATTAGATCCATCTCTTGTTCACTCTTTCCATTGAAAGCAGATGGTCAAGAGATTATGTCAAAGCGTGCCAGGTAGCAGTGTGAGCAGTTTCTCTAATTGTCGGAAACAAAGCTCAAGAAAATCATTTCGAGGAATTTAAATTCAAAAATCGAGAAGTTTGAAAAATCGAAAATTCAATATTCCTACACTCCAAAACACAAAATAGGAAAACTGAAATATTCAAAATTTARTAAATCTTAATTCTAAAATTTCGAATTTCGGAAAGTCAGAAATTTTGAATTGGAAGATTCACAATTCTGAAACTCCTTAATTCTATAATAAATCTATAAATGTTATATTCAAAAGTTTAAAACTCAATGATCAACTGTCTTATTCAAAGATTTCAACGTCCAATCAGTGATAAAAAAATAAATGGAAAAATGTACCTTTTTTTTTTTTTCTTTTATTCTTTGAATGTAATTCTGTTTCCGTAGAGGAAAAATCAGTCAGATGATATTTACCCTGCTATCAGATGGTTGTGCCTGAAAGGTCTGGATCAGAATTAGAAAACTGTGTATTCAATTTTCAGATTTCCCAAATCGACATATATTTAAATTAGAGAGCTTTCTACAAACGTTTATGCAGATGAATTAGTTTATTTAGAAATCAGAAAATATTTGGCAGGCTAAGATTTACATTCCTGGGAGGTTATTGTAAAGCTTATTGCATCCACTGGTGACAAATTCTTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAAATTCAAAAATCGAGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TGAAATCTTTGAATAAGACAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAAATTCAAAAATCGAGAAGTTTGAAAAATCGAAAATTCAATATTCCTACACTCCAAAACACAAAATAGGAAAACTGAAATATTCAAAATTTAGTAAATCTTAATTCTAAAATTTCGAATTTCGGAAAGTCAGAAATTTTGAATTGGAAGATTCACAATTCTGAAACTCCTTAATTCTATAATAAATCTATAAATGTTATATTCAAAAGTTTAAAACTCAATGATCAACTGTCTTATTCAAAGATTTCA</canonical_amplicon>
		<polymorphic_amplicon>TTAAATTCAAAAATCGAGAAGTTTGAAAAATCGAAAATTCAATATTCCTACACTCCAAAACACAAAATAGGAAAACTGAAATATTCAAAATTTARTAAATCTTAATTCTAAAATTTCGAATTTCGGAAAGTCAGAAATTTTGAATTGGAAGATTCACAATTCTGAAACTCCTTAATTCTATAATAAATCTATAAATGTTATATTCAAAAGTTTAAAACTCAATGATCAACTGTCTTATTCAAAGATTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27678</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>305426</contig_pos>
        <strand>+</strand>
        <context>CAGATGGTTG[G/T]GCCTGAAAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGTAGAGGAAAAATCAGTCAGATGATATTTACCCTGCTATCAGATGGTTG</left_flank>
        <right_flank>GCCTGAAAGGTCTGGATCAGAATTAGAAAACTGTGTATTCAATTTTCAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACTCTTTCCATTGAAAGCAGATGGTCAAGAGATTATGTCAAAGCGTGCCAGGTAGCAGTGTGAGCAGTTTCTCTAATTGTCGGAAACAAAGCTCAAGAAAATCATTTCGAGGAATTTAAATTCAAAAATCGAGAAGTTTGAAAAATCGAAAATTCAATATTCCTACACTCCAAAACACAAAATAGGAAAACTGAAATATTCAAAATTTAGTAAATCTTAATTCTAAAATTTCGAATTTCGGAAAGTCAGAAATTTTGAATTGGAAGATTCACAATTCTGAAACTCCTTAATTCTATAATAAATCTATAAATGTTATATTCAAAAGTTTAAAACTCAATGATCAACTGTCTTATTCAAAGATTTCAACGTCCAATCAGTGATAAAAAAATAAATGGAAAAATGTACCTTTTTTTTTTTTTCTTTTATTCTTTGAATGTAATTCTGTTTCCGTAGAGGAAAAATCAGTCAGATGATATTTACCCTGCTATCAGATGGTTGTGCCTGAAAGGTCTGGATCAGAATTAGAAAACTGTGTATTCAATTTTCAGATTTCCCAAATCGACATATATTTAAATTAGAGAGCTTTCTACAAACGTTTATGCAGATGAATTAGTTTATTTAGAAATCAGAAAATATTTGGCAGGCTAAGATTTACATTCCTGGGAGGTTATTGTAAAGCTTATTGCATCCACTGGTGACAAATTCTTGAGTCTTAGTTGGAGTGGTTTTCAAACAACATCTGAATCCGTTTCCAGTCATACACGATCCATCGTAGACAGCAGCGCAGTTATGGACACAGAGGTTGTAGCACGTTTGGTTGGAGGCAAGGGCATAACTGTTCCATGGAGCACAATTGTCATAAGATGCTGCTCCTTGGACAGAAGAACAGTATTGTTGGCAGATGACCAAGGTGACAGAGGCAGCAGTAGAAAAAAGACAGAAGGCAAGAAGGACACGGAACATCTGAAAATGTTCGTAGATTGAAAGTTATAGGCAGGA</canonical>
            <polymorphic>CACTCTTTCCATTGAAAGCAGATGGTCAAGAGATTATGTCAAAGCGTGCCAGGTAGCAGTGTGAGCAGTTTCTCTAATTGTCGGAAACAAAGCTCAAGAAAATCATTTCGAGGAATTTAAATTCAAAAATCGAGAAGTTTGAAAAATCGAAAATTCAATATTCCTACACTCCAAAACACAAAATAGGAAAACTGAAATATTCAAAATTTAGTAAATCTTAATTCTAAAATTTCGAATTTCGGAAAGTCAGAAATTTTGAATTGGAAGATTCACAATTCTGAAACTCCTTAATTCTATAATAAATCTATAAATGTTATATTCAAAAGTTTAAAACTCAATGATCAACTGTCTTATTCAAAGATTTCAACGTCCAATCAGTGATAAAAAAATAAATGGAAAAATGTACCTTTTTTTTTTTTTCTTTTATTCTTTGAATGTAATTCTGTTTCCGTAGAGGAAAAATCAGTCAGATGATATTTACCCTGCTATCAGATGGTTGKGCCTGAAAGGTCTGGATCAGAATTAGAAAACTGTGTATTCAATTTTCAGATTTCCCAAATCGACATATATTTAAATTAGAGAGCTTTCTACAAACGTTTATGCAGATGAATTAGTTTATTTAGAAATCAGAAAATATTTGGCAGGCTAAGATTTACATTCCTGGGAGGTTATTGTAAAGCTTATTGCATCCACTGGTGACAAATTCTTGAGTCTTAGTTGGAGTGGTTTTCAAACAACATCTGAATCCGTTTCCAGTCATACACGATCCATCGTAGACAGCAGCGCAGTTATGGACACAGAGGTTGTAGCACGTTTGGTTGGAGGCAAGGGCATAACTGTTCCATGGAGCACAATTGTCATAAGATGCTGCTCCTTGGACAGAAGAACAGTATTGTTGGCAGATGACCAAGGTGACAGAGGCAGCAGTAGAAAAAAGACAGAAGGCAAGAAGGACACGGAACATCTGAAAATGTTCGTAGATTGAAAGTTATAGGCAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>157 121 108 105 94 63 46 44 42 40 38 34 34 27 14 13 10 6 2 2</canonical_bands>
                <polymorphic_bands>157 155 108 105 94 63 46 44 42 40 38 34 27 14 13 10 6 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAATTCTGTTTCCGTAGAGGA</pcr_primer_p1>
		<pcr_primer_p2>TGCAATAAGCTTTACAATAACCT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GTAATTCTGTTTCCGTAGAGGAAAAATCAGTCAGATGATATTTACCCTGCTATCAGATGGTTGTGCCTGAAAGGTCTGGATCAGAATTAGAAAACTGTGTATTCAATTTTCAGATTTCCCAAATCGACATATATTTAAATTAGAGAGCTTTCTACAAACGTTTATGCAGATGAATTAGTTTATTTAGAAATCAGAAAATATTTGGCAGGCTAAGATTTACATTCCTGGGAGGTTATTGTAAAGCTTATTGCA</canonical_amplicon>
		<polymorphic_amplicon>GTAATTCTGTTTCCGTAGAGGAAAAATCAGTCAGATGATATTTACCCTGCTATCAGATGGTTGKGCCTGAAAGGTCTGGATCAGAATTAGAAAACTGTGTATTCAATTTTCAGATTTCCCAAATCGACATATATTTAAATTAGAGAGCTTTCTACAAACGTTTATGCAGATGAATTAGTTTATTTAGAAATCAGAAAATATTTGGCAGGCTAAGATTTACATTCCTGGGAGGTTATTGTAAAGCTTATTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27679</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>305475</contig_pos>
        <strand>+</strand>
        <context>TCAATTTTCA[A/G]ATTTCCCAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGCCTGAAAGGTCTGGATCAGAATTAGAAAACTGTGTATTCAATTTTCA</left_flank>
        <right_flank>ATTTCCCAAATCGACATATATTTAAATTAGAGAGCTTTCTACAAACGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGGTAGCAGTGTGAGCAGTTTCTCTAATTGTCGGAAACAAAGCTCAAGAAAATCATTTCGAGGAATTTAAATTCAAAAATCGAGAAGTTTGAAAAATCGAAAATTCAATATTCCTACACTCCAAAACACAAAATAGGAAAACTGAAATATTCAAAATTTAGTAAATCTTAATTCTAAAATTTCGAATTTCGGAAAGTCAGAAATTTTGAATTGGAAGATTCACAATTCTGAAACTCCTTAATTCTATAATAAATCTATAAATGTTATATTCAAAAGTTTAAAACTCAATGATCAACTGTCTTATTCAAAGATTTCAACGTCCAATCAGTGATAAAAAAATAAATGGAAAAATGTACCTTTTTTTTTTTTTCTTTTATTCTTTGAATGTAATTCTGTTTCCGTAGAGGAAAAATCAGTCAGATGATATTTACCCTGCTATCAGATGGTTGTGCCTGAAAGGTCTGGATCAGAATTAGAAAACTGTGTATTCAATTTTCAGATTTCCCAAATCGACATATATTTAAATTAGAGAGCTTTCTACAAACGTTTATGCAGATGAATTAGTTTATTTAGAAATCAGAAAATATTTGGCAGGCTAAGATTTACATTCCTGGGAGGTTATTGTAAAGCTTATTGCATCCACTGGTGACAAATTCTTGAGTCTTAGTTGGAGTGGTTTTCAAACAACATCTGAATCCGTTTCCAGTCATACACGATCCATCGTAGACAGCAGCGCAGTTATGGACACAGAGGTTGTAGCACGTTTGGTTGGAGGCAAGGGCATAACTGTTCCATGGAGCACAATTGTCATAAGATGCTGCTCCTTGGACAGAAGAACAGTATTGTTGGCAGATGACCAAGGTGACAGAGGCAGCAGTAGAAAAAAGACAGAAGGCAAGAAGGACACGGAACATCTGAAAATGTTCGTAGATTGAAAGTTATAGGCAGGAAGAAAAATGGACTTACCATATTGATTGTTGTCAGATAAACTGATGAGGA</canonical>
            <polymorphic>CAGGTAGCAGTGTGAGCAGTTTCTCTAATTGTCGGAAACAAAGCTCAAGAAAATCATTTCGAGGAATTTAAATTCAAAAATCGAGAAGTTTGAAAAATCGAAAATTCAATATTCCTACACTCCAAAACACAAAATAGGAAAACTGAAATATTCAAAATTTAGTAAATCTTAATTCTAAAATTTCGAATTTCGGAAAGTCAGAAATTTTGAATTGGAAGATTCACAATTCTGAAACTCCTTAATTCTATAATAAATCTATAAATGTTATATTCAAAAGTTTAAAACTCAATGATCAACTGTCTTATTCAAAGATTTCAACGTCCAATCAGTGATAAAAAAATAAATGGAAAAATGTACCTTTTTTTTTTTTTCTTTTATTCTTTGAATGTAATTCTGTTTCCGTAGAGGAAAAATCAGTCAGATGATATTTACCCTGCTATCAGATGGTTGTGCCTGAAAGGTCTGGATCAGAATTAGAAAACTGTGTATTCAATTTTCARATTTCCCAAATCGACATATATTTAAATTAGAGAGCTTTCTACAAACGTTTATGCAGATGAATTAGTTTATTTAGAAATCAGAAAATATTTGGCAGGCTAAGATTTACATTCCTGGGAGGTTATTGTAAAGCTTATTGCATCCACTGGTGACAAATTCTTGAGTCTTAGTTGGAGTGGTTTTCAAACAACATCTGAATCCGTTTCCAGTCATACACGATCCATCGTAGACAGCAGCGCAGTTATGGACACAGAGGTTGTAGCACGTTTGGTTGGAGGCAAGGGCATAACTGTTCCATGGAGCACAATTGTCATAAGATGCTGCTCCTTGGACAGAAGAACAGTATTGTTGGCAGATGACCAAGGTGACAGAGGCAGCAGTAGAAAAAAGACAGAAGGCAAGAAGGACACGGAACATCTGAAAATGTTCGTAGATTGAAAGTTATAGGCAGGAAGAAAAATGGACTTACCATATTGATTGTTGTCAGATAAACTGATGAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>224 190 158 113 81 67 34 30 29 28 22 16 8</canonical_bands>
                <polymorphic_bands>224 190 158 113 110 67 34 30 28 22 16 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATATTTACCCTGCTATCAGATG</pcr_primer_p1>
		<pcr_primer_p2>TCCAACTAAGACTCAAGAATTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATATTTACCCTGCTATCAGATGGTTGTGCCTGAAAGGTCTGGATCAGAATTAGAAAACTGTGTATTCAATTTTCAGATTTCCCAAATCGACATATATTTAAATTAGAGAGCTTTCTACAAACGTTTATGCAGATGAATTAGTTTATTTAGAAATCAGAAAATATTTGGCAGGCTAAGATTTACATTCCTGGGAGGTTATTGTAAAGCTTATTGCATCCACTGGTGACAAATTCTTGAGTCTTAGTTGGA</canonical_amplicon>
		<polymorphic_amplicon>GATATTTACCCTGCTATCAGATGGTTGTGCCTGAAAGGTCTGGATCAGAATTAGAAAACTGTGTATTCAATTTTCARATTTCCCAAATCGACATATATTTAAATTAGAGAGCTTTCTACAAACGTTTATGCAGATGAATTAGTTTATTTAGAAATCAGAAAATATTTGGCAGGCTAAGATTTACATTCCTGGGAGGTTATTGTAAAGCTTATTGCATCCACTGGTGACAAATTCTTGAGTCTTAGTTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27680</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>305711</contig_pos>
        <strand>+</strand>
        <context>AGACAGCAGC[A/G]CAGTTATGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAACATCTGAATCCGTTTCCAGTCATACACGATCCATCGTAGACAGCAGC</left_flank>
        <right_flank>CAGTTATGGACACAGAGGTTGTAGCACGTTTGGTTGGAGGCAAGGGCATA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTAATTCTATAATAAATCTATAAATGTTATATTCAAAAGTTTAAAACTCAATGATCAACTGTCTTATTCAAAGATTTCAACGTCCAATCAGTGATAAAAAAATAAATGGAAAAATGTACCTTTTTTTTTTTTTCTTTTATTCTTTGAATGTAATTCTGTTTCCGTAGAGGAAAAATCAGTCAGATGATATTTACCCTGCTATCAGATGGTTGTGCCTGAAAGGTCTGGATCAGAATTAGAAAACTGTGTATTCAATTTTCAGATTTCCCAAATCGACATATATTTAAATTAGAGAGCTTTCTACAAACGTTTATGCAGATGAATTAGTTTATTTAGAAATCAGAAAATATTTGGCAGGCTAAGATTTACATTCCTGGGAGGTTATTGTAAAGCTTATTGCATCCACTGGTGACAAATTCTTGAGTCTTAGTTGGAGTGGTTTTCAAACAACATCTGAATCCGTTTCCAGTCATACACGATCCATCGTAGACAGCAGCGCAGTTATGGACACAGAGGTTGTAGCACGTTTGGTTGGAGGCAAGGGCATAACTGTTCCATGGAGCACAATTGTCATAAGATGCTGCTCCTTGGACAGAAGAACAGTATTGTTGGCAGATGACCAAGGTGACAGAGGCAGCAGTAGAAAAAAGACAGAAGGCAAGAAGGACACGGAACATCTGAAAATGTTCGTAGATTGAAAGTTATAGGCAGGAAGAAAAATGGACTTACCATATTGATTGTTGTCAGATAAACTGATGAGGATCGGTTTCATAGCTGGCCTTTTATACGTGTTCTGATGGCTGGAATATGTTTGTATGAAAGTTAGCGACTTTAGCGACATGAATCCTGAGCACGCCGAAAGTACACAAAAAATCTAGAGATATAGGCATTCAGTTTTCCGGAATACCATCTGTCCACGGATTTTTTGCGACACCTACGCATGCCAGATCGAATTTTGTTACTGATCTTTTTAGAATTTGAAGCTTTCAAATATATTA</canonical>
            <polymorphic>CCTTAATTCTATAATAAATCTATAAATGTTATATTCAAAAGTTTAAAACTCAATGATCAACTGTCTTATTCAAAGATTTCAACGTCCAATCAGTGATAAAAAAATAAATGGAAAAATGTACCTTTTTTTTTTTTTCTTTTATTCTTTGAATGTAATTCTGTTTCCGTAGAGGAAAAATCAGTCAGATGATATTTACCCTGCTATCAGATGGTTGTGCCTGAAAGGTCTGGATCAGAATTAGAAAACTGTGTATTCAATTTTCAGATTTCCCAAATCGACATATATTTAAATTAGAGAGCTTTCTACAAACGTTTATGCAGATGAATTAGTTTATTTAGAAATCAGAAAATATTTGGCAGGCTAAGATTTACATTCCTGGGAGGTTATTGTAAAGCTTATTGCATCCACTGGTGACAAATTCTTGAGTCTTAGTTGGAGTGGTTTTCAAACAACATCTGAATCCGTTTCCAGTCATACACGATCCATCGTAGACAGCAGCRCAGTTATGGACACAGAGGTTGTAGCACGTTTGGTTGGAGGCAAGGGCATAACTGTTCCATGGAGCACAATTGTCATAAGATGCTGCTCCTTGGACAGAAGAACAGTATTGTTGGCAGATGACCAAGGTGACAGAGGCAGCAGTAGAAAAAAGACAGAAGGCAAGAAGGACACGGAACATCTGAAAATGTTCGTAGATTGAAAGTTATAGGCAGGAAGAAAAATGGACTTACCATATTGATTGTTGTCAGATAAACTGATGAGGATCGGTTTCATAGCTGGCCTTTTATACGTGTTCTGATGGCTGGAATATGTTTGTATGAAAGTTAGCGACTTTAGCGACATGAATCCTGAGCACGCCGAAAGTACACAAAAAATCTAGAGATATAGGCATTCAGTTTTCCGGAATACCATCTGTCCACGGATTTTTTGCGACACCTACGCATGCCAGATCGAATTTTGTTACTGATCTTTTTAGAATTTGAAGCTTTCAAATATATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTGAGTCTTAGTTGGAGTG</pcr_primer_p1>
		<pcr_primer_p2>CTTCTTGCCTTCTGTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTGAGTCTTAGTTGGAGTGGTTTTCAAACAACATCTGAATCCGTTTCCAGTCATACACGATCCATCGTAGACAGCAGCGCAGTTATGGACACAGAGGTTGTAGCACGTTTGGTTGGAGGCAAGGGCATAACTGTTCCATGGAGCACAATTGTCATAAGATGCTGCTCCTTGGACAGAAGAACAGTATTGTTGGCAGATGACCAAGGTGACAGAGGCAGCAGTAGAAAAAAGACAGAAGGCAAGAAG</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTGAGTCTTAGTTGGAGTGGTTTTCAAACAACATCTGAATCCGTTTCCAGTCATACACGATCCATCGTAGACAGCAGCRCAGTTATGGACACAGAGGTTGTAGCACGTTTGGTTGGAGGCAAGGGCATAACTGTTCCATGGAGCACAATTGTCATAAGATGCTGCTCCTTGGACAGAAGAACAGTATTGTTGGCAGATGACCAAGGTGACAGAGGCAGCAGTAGAAAAAAGACAGAAGGCAAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27681</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>307344</contig_pos>
        <strand>+</strand>
        <context>CCAACCAAAC[C/G]TGCTACAACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TATGACAATTGTGCTCCATGGAACAGTTATGCCCTTGCCTCCAACCAAAC</left_flank>
        <right_flank>TGCTACAACCTCTGTGTCCATAACTGTGCTGCTGTCTACGATGGATCGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATATTCGCGCCCACATAACTTTAGTTTTTAATATATTTGAAAGCTTCAAATTCTAAAAAGATCAGTAACAAAATTCGAGCTGGCATGCGTAGGTGTCGCGAAAAAATCCGTGGGCAGATGGTATTCCGGAAAACTGAATGTCTATTTCTCTAGATTTTTTGTGTACTTTCGGCGTGCTCAGGATTCATGTCGTTAAAGAAACTTTTATACAAACATATTCCAGCCATCAGAACACGTATAAAAAGCCAGCTATGAAACCGATCCTCATCAGTTTATCTGACAACAATCAATATGGTAAGTCCATTTTTCTTCCTGCCTATAACTTTCAATCTACGAACATTTTCAGATGTTCCGTGTCCTTCTTGCCTTCTGTCTTTTTTCTACTGCTGCCTCTGTCACCTTGGTCATCTGCCAACAATACTGTTCCTCTGTCCAAGGAGCAGCATCTTATGACAATTGTGCTCCATGGAACAGTTATGCCCTTGCCTCCAACCAAACCTGCTACAACCTCTGTGTCCATAACTGTGCTGCTGTCTACGATGGATCGTGTATGACTGGAAACAAATTCAGATGTTGTTTGAAAACCACTCCAACTAAGACTCAAGAATTTGTCACCAGTGGATGCAATAAGCTTTACAATAACCTCCCAGGAATGTAAAGCTTAGCCTGCCAAATATTTTCCGATTTCTAAATAAACTCATTCATCTGCATAAACGTTTGTAGCGAGCACGTTAATTCGAAAAGATGCCAAAATCTGAAAATTGGATACACAGTTTTCAAATTCTGATCCAGACCTTCCAGGCGCAGCCGTTTAATAGTTGGTCAAATATCGTCTGACGGATGTTTCTTCTGCGGAAGCGGAATGGTATACAAAAAAGAAACGAAAAAAGAAAAATATAAGATATATTACTCCATTTAGTTCTATCACTGATTGGACGTTGGAATTTTCGAAAAAGACAGTTGATCATCGAATTTAGAATTTTCGAACTTGAATTCATA</canonical>
            <polymorphic>CATATTCGCGCCCACATAACTTTAGTTTTTAATATATTTGAAAGCTTCAAATTCTAAAAAGATCAGTAACAAAATTCGAGCTGGCATGCGTAGGTGTCGCGAAAAAATCCGTGGGCAGATGGTATTCCGGAAAACTGAATGTCTATTTCTCTAGATTTTTTGTGTACTTTCGGCGTGCTCAGGATTCATGTCGTTAAAGAAACTTTTATACAAACATATTCCAGCCATCAGAACACGTATAAAAAGCCAGCTATGAAACCGATCCTCATCAGTTTATCTGACAACAATCAATATGGTAAGTCCATTTTTCTTCCTGCCTATAACTTTCAATCTACGAACATTTTCAGATGTTCCGTGTCCTTCTTGCCTTCTGTCTTTTTTCTACTGCTGCCTCTGTCACCTTGGTCATCTGCCAACAATACTGTTCCTCTGTCCAAGGAGCAGCATCTTATGACAATTGTGCTCCATGGAACAGTTATGCCCTTGCCTCCAACCAAACSTGCTACAACCTCTGTGTCCATAACTGTGCTGCTGTCTACGATGGATCGTGTATGACTGGAAACAAATTCAGATGTTGTTTGAAAACCACTCCAACTAAGACTCAAGAATTTGTCACCAGTGGATGCAATAAGCTTTACAATAACCTCCCAGGAATGTAAAGCTTAGCCTGCCAAATATTTTCCGATTTCTAAATAAACTCATTCATCTGCATAAACGTTTGTAGCGAGCACGTTAATTCGAAAAGATGCCAAAATCTGAAAATTGGATACACAGTTTTCAAATTCTGATCCAGACCTTCCAGGCGCAGCCGTTTAATAGTTGGTCAAATATCGTCTGACGGATGTTTCTTCTGCGGAAGCGGAATGGTATACAAAAAAGAAACGAAAAAAGAAAAATATAAGATATATTACTCCATTTAGTTCTATCACTGATTGGACGTTGGAATTTTCGAAAAAGACAGTTGATCATCGAATTTAGAATTTTCGAACTTGAATTCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCTTCCTGCCTATAACTT</pcr_primer_p1>
		<pcr_primer_p2>ATACACGATCCATCGTAGACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCTTCCTGCCTATAACTTTCAATCTACGAACATTTTCAGATGTTCCGTGTCCTTCTTGCCTTCTGTCTTTTTTCTACTGCTGCCTCTGTCACCTTGGTCATCTGCCAACAATACTGTTCCTCTGTCCAAGGAGCAGCATCTTATGACAATTGTGCTCCATGGAACAGTTATGCCCTTGCCTCCAACCAAACCTGCTACAACCTCTGTGTCCATAACTGTGCTGCTGTCTACGATGGATCGTGTAT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCTTCCTGCCTATAACTTTCAATCTACGAACATTTTCAGATGTTCCGTGTCCTTCTTGCCTTCTGTCTTTTTTCTACTGCTGCCTCTGTCACCTTGGTCATCTGCCAACAATACTGTTCCTCTGTCCAAGGAGCAGCATCTTATGACAATTGTGCTCCATGGAACAGTTATGCCCTTGCCTCCAACCAAACSTGCTACAACCTCTGTGTCCATAACTGTGCTGCTGTCTACGATGGATCGTGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27682</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>307408</contig_pos>
        <strand>+</strand>
        <context>GACTGGAAAC[A/G]RATTCAGATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGTCCATAACTGTGCTGCTGTCTACGATGGATCGTGTATGACTGGAAAC</left_flank>
        <right_flank>AATTCAGATGTTGTTTGAAAACCACTCCAACTAAGACTCAAGAATTTGTC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTAACAAAATTCGAGCTGGCATGCGTAGGTGTCGCGAAAAAATCCGTGGGCAGATGGTATTCCGGAAAACTGAATGTCTATTTCTCTAGATTTTTTGTGTACTTTCGGCGTGCTCAGGATTCATGTCGTTAAAGAAACTTTTATACAAACATATTCCAGCCATCAGAACACGTATAAAAAGCCAGCTATGAAACCGATCCTCATCAGTTTATCTGACAACAATCAATATGGTAAGTCCATTTTTCTTCCTGCCTATAACTTTCAATCTACGAACATTTTCAGATGTTCCGTGTCCTTCTTGCCTTCTGTCTTTTTTCTACTGCTGCCTCTGTCACCTTGGTCATCTGCCAACAATACTGTTCCTCTGTCCAAGGAGCAGCATCTTATGACAATTGTGCTCCATGGAACAGTTATGCCCTTGCCTCCAACCAAACCTGCTACAACCTCTGTGTCCATAACTGTGCTGCTGTCTACGATGGATCGTGTATGACTGGAAACAAATTCAGATGTTGTTTGAAAACCACTCCAACTAAGACTCAAGAATTTGTCACCAGTGGATGCAATAAGCTTTACAATAACCTCCCAGGAATGTAAAGCTTAGCCTGCCAAATATTTTCCGATTTCTAAATAAACTCATTCATCTGCATAAACGTTTGTAGCGAGCACGTTAATTCGAAAAGATGCCAAAATCTGAAAATTGGATACACAGTTTTCAAATTCTGATCCAGACCTTCCAGGCGCAGCCGTTTAATAGTTGGTCAAATATCGTCTGACGGATGTTTCTTCTGCGGAAGCGGAATGGTATACAAAAAAGAAACGAAAAAAGAAAAATATAAGATATATTACTCCATTTAGTTCTATCACTGATTGGACGTTGGAATTTTCGAAAAAGACAGTTGATCATCGAATTTAGAATTTTCGAACTTGAATTCATACATCTAGAATTACCGAGTTTCAGAATTTAGAATCTTCCAATTCAAAATTTCTGAATTTCGAAAT</canonical>
            <polymorphic>AGTAACAAAATTCGAGCTGGCATGCGTAGGTGTCGCGAAAAAATCCGTGGGCAGATGGTATTCCGGAAAACTGAATGTCTATTTCTCTAGATTTTTTGTGTACTTTCGGCGTGCTCAGGATTCATGTCGTTAAAGAAACTTTTATACAAACATATTCCAGCCATCAGAACACGTATAAAAAGCCAGCTATGAAACCGATCCTCATCAGTTTATCTGACAACAATCAATATGGTAAGTCCATTTTTCTTCCTGCCTATAACTTTCAATCTACGAACATTTTCAGATGTTCCGTGTCCTTCTTGCCTTCTGTCTTTTTTCTACTGCTGCCTCTGTCACCTTGGTCATCTGCCAACAATACTGTTCCTCTGTCCAAGGAGCAGCATCTTATGACAATTGTGCTCCATGGAACAGTTATGCCCTTGCCTCCAACCAAACCTGCTACAACCTCTGTGTCCATAACTGTGCTGCTGTCTACGATGGATCGTGTATGACTGGAAACRAATTCAGATGTTGTTTGAAAACCACTCCAACTAAGACTCAAGAATTTGTCACCAGTGGATGCAATAAGCTTTACAATAACCTCCCAGGAATGTAAAGCTTAGCCTGCCAAATATTTTCCGATTTCTAAATAAACTCATTCATCTGCATAAACGTTTGTAGCGAGCACGTTAATTCGAAAAGATGCCAAAATCTGAAAATTGGATACACAGTTTTCAAATTCTGATCCAGACCTTCCAGGCGCAGCCGTTTAATAGTTGGTCAAATATCGTCTGACGGATGTTTCTTCTGCGGAAGCGGAATGGTATACAAAAAAGAAACGAAAAAAGAAAAATATAAGATATATTACTCCATTTAGTTCTATCACTGATTGGACGTTGGAATTTTCGAAAAAGACAGTTGATCATCGAATTTAGAATTTTCGAACTTGAATTCATACATCTAGAATTACCGAGTTTCAGAATTTAGAATCTTCCAATTCAAAATTTCTGAATTTCGAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>492 174 163 42 31 28 22 14 11 8 8 7</canonical_bands>
                <polymorphic_bands>534 174 163 31 28 22 14 11 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTACAACCTCTGTGTCCATAACT</pcr_primer_p1>
		<pcr_primer_p2>TGGCATCTTTTCGAATTAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTACAACCTCTGTGTCCATAACTGTGCTGCTGTCTACGATGGATCGTGTATGACTGGAAACAAATTCAGATGTTGTTTGAAAACCACTCCAACTAAGACTCAAGAATTTGTCACCAGTGGATGCAATAAGCTTTACAATAACCTCCCAGGAATGTAAAGCTTAGCCTGCCAAATATTTTCCGATTTCTAAATAAACTCATTCATCTGCATAAACGTTTGTAGCGAGCACGTTAATTCGAAAAGATGCCA</canonical_amplicon>
		<polymorphic_amplicon>CTACAACCTCTGTGTCCATAACTGTGCTGCTGTCTACGATGGATCGTGTATGACTGGAAACRAATTCAGATGTTGTTTGAAAACCACTCCAACTAAGACTCAAGAATTTGTCACCAGTGGATGCAATAAGCTTTACAATAACCTCCCAGGAATGTAAAGCTTAGCCTGCCAAATATTTTCCGATTTCTAAATAAACTCATTCATCTGCATAAACGTTTGTAGCGAGCACGTTAATTCGAAAAGATGCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27683</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>307409</contig_pos>
        <strand>+</strand>
        <context>ACTGGAAACR[A/G]ATTCAGATGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTCCATAACTGTGCTGCTGTCTACGATGGATCGTGTATGACTGGAAACA</left_flank>
        <right_flank>ATTCAGATGTTGTTTGAAAACCACTCCAACTAAGACTCAAGAATTTGTCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAACAAAATTCGAGCTGGCATGCGTAGGTGTCGCGAAAAAATCCGTGGGCAGATGGTATTCCGGAAAACTGAATGTCTATTTCTCTAGATTTTTTGTGTACTTTCGGCGTGCTCAGGATTCATGTCGTTAAAGAAACTTTTATACAAACATATTCCAGCCATCAGAACACGTATAAAAAGCCAGCTATGAAACCGATCCTCATCAGTTTATCTGACAACAATCAATATGGTAAGTCCATTTTTCTTCCTGCCTATAACTTTCAATCTACGAACATTTTCAGATGTTCCGTGTCCTTCTTGCCTTCTGTCTTTTTTCTACTGCTGCCTCTGTCACCTTGGTCATCTGCCAACAATACTGTTCCTCTGTCCAAGGAGCAGCATCTTATGACAATTGTGCTCCATGGAACAGTTATGCCCTTGCCTCCAACCAAACCTGCTACAACCTCTGTGTCCATAACTGTGCTGCTGTCTACGATGGATCGTGTATGACTGGAAACAAATTCAGATGTTGTTTGAAAACCACTCCAACTAAGACTCAAGAATTTGTCACCAGTGGATGCAATAAGCTTTACAATAACCTCCCAGGAATGTAAAGCTTAGCCTGCCAAATATTTTCCGATTTCTAAATAAACTCATTCATCTGCATAAACGTTTGTAGCGAGCACGTTAATTCGAAAAGATGCCAAAATCTGAAAATTGGATACACAGTTTTCAAATTCTGATCCAGACCTTCCAGGCGCAGCCGTTTAATAGTTGGTCAAATATCGTCTGACGGATGTTTCTTCTGCGGAAGCGGAATGGTATACAAAAAAGAAACGAAAAAAGAAAAATATAAGATATATTACTCCATTTAGTTCTATCACTGATTGGACGTTGGAATTTTCGAAAAAGACAGTTGATCATCGAATTTAGAATTTTCGAACTTGAATTCATACATCTAGAATTACCGAGTTTCAGAATTTAGAATCTTCCAATTCAAAATTTCTGAATTTCGAAATT</canonical>
            <polymorphic>GTAACAAAATTCGAGCTGGCATGCGTAGGTGTCGCGAAAAAATCCGTGGGCAGATGGTATTCCGGAAAACTGAATGTCTATTTCTCTAGATTTTTTGTGTACTTTCGGCGTGCTCAGGATTCATGTCGTTAAAGAAACTTTTATACAAACATATTCCAGCCATCAGAACACGTATAAAAAGCCAGCTATGAAACCGATCCTCATCAGTTTATCTGACAACAATCAATATGGTAAGTCCATTTTTCTTCCTGCCTATAACTTTCAATCTACGAACATTTTCAGATGTTCCGTGTCCTTCTTGCCTTCTGTCTTTTTTCTACTGCTGCCTCTGTCACCTTGGTCATCTGCCAACAATACTGTTCCTCTGTCCAAGGAGCAGCATCTTATGACAATTGTGCTCCATGGAACAGTTATGCCCTTGCCTCCAACCAAACCTGCTACAACCTCTGTGTCCATAACTGTGCTGCTGTCTACGATGGATCGTGTATGACTGGAAACARATTCAGATGTTGTTTGAAAACCACTCCAACTAAGACTCAAGAATTTGTCACCAGTGGATGCAATAAGCTTTACAATAACCTCCCAGGAATGTAAAGCTTAGCCTGCCAAATATTTTCCGATTTCTAAATAAACTCATTCATCTGCATAAACGTTTGTAGCGAGCACGTTAATTCGAAAAGATGCCAAAATCTGAAAATTGGATACACAGTTTTCAAATTCTGATCCAGACCTTCCAGGCGCAGCCGTTTAATAGTTGGTCAAATATCGTCTGACGGATGTTTCTTCTGCGGAAGCGGAATGGTATACAAAAAAGAAACGAAAAAAGAAAAATATAAGATATATTACTCCATTTAGTTCTATCACTGATTGGACGTTGGAATTTTCGAAAAAGACAGTTGATCATCGAATTTAGAATTTTCGAACTTGAATTCATACATCTAGAATTACCGAGTTTCAGAATTTAGAATCTTCCAATTCAAAATTTCTGAATTTCGAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>492 174 163 42 31 28 22 14 12 8 7 7</canonical_bands>
                <polymorphic_bands>534 174 163 31 28 22 14 12 8 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>383 163 128 109 42 28 26 20 16 15 15 14 8 8 7 7 7 4</canonical_bands>
                <polymorphic_bands>383 163 151 128 28 26 20 16 15 15 14 8 8 7 7 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTACAACCTCTGTGTCCATAACT</pcr_primer_p1>
		<pcr_primer_p2>TGGCATCTTTTCGAATTAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTACAACCTCTGTGTCCATAACTGTGCTGCTGTCTACGATGGATCGTGTATGACTGGAAACAAATTCAGATGTTGTTTGAAAACCACTCCAACTAAGACTCAAGAATTTGTCACCAGTGGATGCAATAAGCTTTACAATAACCTCCCAGGAATGTAAAGCTTAGCCTGCCAAATATTTTCCGATTTCTAAATAAACTCATTCATCTGCATAAACGTTTGTAGCGAGCACGTTAATTCGAAAAGATGCCA</canonical_amplicon>
		<polymorphic_amplicon>CTACAACCTCTGTGTCCATAACTGTGCTGCTGTCTACGATGGATCGTGTATGACTGGAAACARATTCAGATGTTGTTTGAAAACCACTCCAACTAAGACTCAAGAATTTGTCACCAGTGGATGCAATAAGCTTTACAATAACCTCCCAGGAATGTAAAGCTTAGCCTGCCAAATATTTTCCGATTTCTAAATAAACTCATTCATCTGCATAAACGTTTGTAGCGAGCACGTTAATTCGAAAAGATGCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27684</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>307548</contig_pos>
        <strand>+</strand>
        <context>TAAACTCATT[C/T]ATCTGCATAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGTAAAGCTTAGCCTGCCAAATATTTTCCGATTTCTAAATAAACTCATT</left_flank>
        <right_flank>ATCTGCATAAACGTTTGTAGCGAGCACGTTAATTCGAAAAGATGCCAAAA</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATACAAACATATTCCAGCCATCAGAACACGTATAAAAAGCCAGCTATGAAACCGATCCTCATCAGTTTATCTGACAACAATCAATATGGTAAGTCCATTTTTCTTCCTGCCTATAACTTTCAATCTACGAACATTTTCAGATGTTCCGTGTCCTTCTTGCCTTCTGTCTTTTTTCTACTGCTGCCTCTGTCACCTTGGTCATCTGCCAACAATACTGTTCCTCTGTCCAAGGAGCAGCATCTTATGACAATTGTGCTCCATGGAACAGTTATGCCCTTGCCTCCAACCAAACCTGCTACAACCTCTGTGTCCATAACTGTGCTGCTGTCTACGATGGATCGTGTATGACTGGAAACAAATTCAGATGTTGTTTGAAAACCACTCCAACTAAGACTCAAGAATTTGTCACCAGTGGATGCAATAAGCTTTACAATAACCTCCCAGGAATGTAAAGCTTAGCCTGCCAAATATTTTCCGATTTCTAAATAAACTCATTCATCTGCATAAACGTTTGTAGCGAGCACGTTAATTCGAAAAGATGCCAAAATCTGAAAATTGGATACACAGTTTTCAAATTCTGATCCAGACCTTCCAGGCGCAGCCGTTTAATAGTTGGTCAAATATCGTCTGACGGATGTTTCTTCTGCGGAAGCGGAATGGTATACAAAAAAGAAACGAAAAAAGAAAAATATAAGATATATTACTCCATTTAGTTCTATCACTGATTGGACGTTGGAATTTTCGAAAAAGACAGTTGATCATCGAATTTAGAATTTTCGAACTTGAATTCATACATCTAGAATTACCGAGTTTCAGAATTTAGAATCTTCCAATTCAAAATTTCTGAATTTCGAAATTCTAATCTTTATAATTAAGAATTTCTAAATTTTGAATATTTGAGTTGTCTTACCTAGAGTTTCTGAGTTTATGGATATTGTGTTCCAAACTTCAATCCTCTGAATTGTTGAATTTCCGAATTTTCGAACAGCTGGATTTT</canonical>
            <polymorphic>TTTATACAAACATATTCCAGCCATCAGAACACGTATAAAAAGCCAGCTATGAAACCGATCCTCATCAGTTTATCTGACAACAATCAATATGGTAAGTCCATTTTTCTTCCTGCCTATAACTTTCAATCTACGAACATTTTCAGATGTTCCGTGTCCTTCTTGCCTTCTGTCTTTTTTCTACTGCTGCCTCTGTCACCTTGGTCATCTGCCAACAATACTGTTCCTCTGTCCAAGGAGCAGCATCTTATGACAATTGTGCTCCATGGAACAGTTATGCCCTTGCCTCCAACCAAACCTGCTACAACCTCTGTGTCCATAACTGTGCTGCTGTCTACGATGGATCGTGTATGACTGGAAACAAATTCAGATGTTGTTTGAAAACCACTCCAACTAAGACTCAAGAATTTGTCACCAGTGGATGCAATAAGCTTTACAATAACCTCCCAGGAATGTAAAGCTTAGCCTGCCAAATATTTTCCGATTTCTAAATAAACTCATTYATCTGCATAAACGTTTGTAGCGAGCACGTTAATTCGAAAAGATGCCAAAATCTGAAAATTGGATACACAGTTTTCAAATTCTGATCCAGACCTTCCAGGCGCAGCCGTTTAATAGTTGGTCAAATATCGTCTGACGGATGTTTCTTCTGCGGAAGCGGAATGGTATACAAAAAAGAAACGAAAAAAGAAAAATATAAGATATATTACTCCATTTAGTTCTATCACTGATTGGACGTTGGAATTTTCGAAAAAGACAGTTGATCATCGAATTTAGAATTTTCGAACTTGAATTCATACATCTAGAATTACCGAGTTTCAGAATTTAGAATCTTCCAATTCAAAATTTCTGAATTTCGAAATTCTAATCTTTATAATTAAGAATTTCTAAATTTTGAATATTTGAGTTGTCTTACCTAGAGTTTCTGAGTTTATGGATATTGTGTTCCAAACTTCAATCCTCTGAATTGTTGAATTTCCGAATTTTCGAACAGCTGGATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAACTAAGACTCAAGAATTTG</pcr_primer_p1>
		<pcr_primer_p2>GACGATATTTGACCAACTATTAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCCAACTAAGACTCAAGAATTTGTCACCAGTGGATGCAATAAGCTTTACAATAACCTCCCAGGAATGTAAAGCTTAGCCTGCCAAATATTTTCCGATTTCTAAATAAACTCATTCATCTGCATAAACGTTTGTAGCGAGCACGTTAATTCGAAAAGATGCCAAAATCTGAAAATTGGATACACAGTTTTCAAATTCTGATCCAGACCTTCCAGGCGCAGCCGTTTAATAGTTGGTCAAATATCGTC</canonical_amplicon>
		<polymorphic_amplicon>TCCAACTAAGACTCAAGAATTTGTCACCAGTGGATGCAATAAGCTTTACAATAACCTCCCAGGAATGTAAAGCTTAGCCTGCCAAATATTTTCCGATTTCTAAATAAACTCATTYATCTGCATAAACGTTTGTAGCGAGCACGTTAATTCGAAAAGATGCCAAAATCTGAAAATTGGATACACAGTTTTCAAATTCTGATCCAGACCTTCCAGGCGCAGCCGTTTAATAGTTGGTCAAATATCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27685</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>307833</contig_pos>
        <strand></strand>
        <context>aattttcgaa[C/T]ttgaattcat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTGGAATTTTCGAAAAAGACAGTTGATCATCGAATTTAGAATTTTCGAA</left_flank>
        <right_flank>TTGAATTCATACATCTAGAATTACCGAGTTTCAGAATTTAGAATCTTCCA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAACCAAACCTGCTACAACCTCTGTGTCCATAACTGTGCTGCTGTCTACGATGGATCGTGTATGACTGGAAACAAATTCAGATGTTGTTTGAAAACCACTCCAACTAAGACTCAAGAATTTGTCACCAGTGGATGCAATAAGCTTTACAATAACCTCCCAGGAATGTAAAGCTTAGCCTGCCAAATATTTTCCGATTTCTAAATAAACTCATTCATCTGCATAAACGTTTGTAGCGAGCACGTTAATTCGAAAAGATGCCAAAATCTGAAAATTGGATACACAGTTTTCAAATTCTGATCCAGACCTTCCAGGCGCAGCCGTTTAATAGTTGGTCAAATATCGTCTGACGGATGTTTCTTCTGCGGAAGCGGAATGGTATACAAAAAAGAAACGAAAAAAGAAAAATATAAGATATATTACTCCATTTAGTTCTATCACTGATTGGACGTTGGAATTTTCGAAAAAGACAGTTGATCATCGAATTTAGAATTTTCGAACTTGAATTCATACATCTAGAATTACCGAGTTTCAGAATTTAGAATCTTCCAATTCAAAATTTCTGAATTTCGAAATTCTAATCTTTATAATTAAGAATTTCTAAATTTTGAATATTTGAGTTGTCTTACCTAGAGTTTCTGAGTTTATGGATATTGTGTTCCAAACTTCAATCCTCTGAATTGTTGAATTTCCGAATTTTCGAACAGCTGGATTTTTGAATTTAGATTCCTTGAAATGATTGTCTTCAGCTTTTGTTTTCAATGATTAGAGAAACTGCCCACACTGTTACCTGACACGCTTTGACATACTCTTGACCATCTGCTTTCAATGGGAAGAGTAAATAAGTGATGGCTCAAAATTAGGCGGTTTTAAAACAATAACAGATTATGGTCGGGCAAACGTCATAATTAGGTGTGAATTACCGTCATAATTGGCGTAGCATTCTTGATATGTCTACAGTGGGCGGAGCTGCAAGAGTACACAATAAACAAGAGATGGTT</canonical>
            <polymorphic>CCAACCAAACCTGCTACAACCTCTGTGTCCATAACTGTGCTGCTGTCTACGATGGATCGTGTATGACTGGAAACAAATTCAGATGTTGTTTGAAAACCACTCCAACTAAGACTCAAGAATTTGTCACCAGTGGATGCAATAAGCTTTACAATAACCTCCCAGGAATGTAAAGCTTAGCCTGCCAAATATTTTCCGATTTCTAAATAAACTCATTCATCTGCATAAACGTTTGTAGCGAGCACGTTAATTCGAAAAGATGCCAAAATCTGAAAATTGGATACACAGTTTTCAAATTCTGATCCAGACCTTCCAGGCGCAGCCGTTTAATAGTTGGTCAAATATCGTCTGACGGATGTTTCTTCTGCGGAAGCGGAATGGTATACAAAAAAGAAACGAAAAAAGAAAAATATAAGATATATTACTCCATTTAGTTCTATCACTGATTGGACGTTGGAATTTTCGAAAAAGACAGTTGATCATCGAATTTAGAATTTTCGAAYTTGAATTCATACATCTAGAATTACCGAGTTTCAGAATTTAGAATCTTCCAATTCAAAATTTCTGAATTTCGAAATTCTAATCTTTATAATTAAGAATTTCTAAATTTTGAATATTTGAGTTGTCTTACCTAGAGTTTCTGAGTTTATGGATATTGTGTTCCAAACTTCAATCCTCTGAATTGTTGAATTTCCGAATTTTCGAACAGCTGGATTTTTGAATTTAGATTCCTTGAAATGATTGTCTTCAGCTTTTGTTTTCAATGATTAGAGAAACTGCCCACACTGTTACCTGACACGCTTTGACATACTCTTGACCATCTGCTTTCAATGGGAAGAGTAAATAAGTGATGGCTCAAAATTAGGCGGTTTTAAAACAATAACAGATTATGGTCGGGCAAACGTCATAATTAGGTGTGAATTACCGTCATAATTGGCGTAGCATTCTTGATATGTCTACAGTGGGCGGAGCTGCAAGAGTACACAATAAACAAGAGATGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCGGAATGGTATACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TCCATAAACTCAGAAACTCTAGG</pcr_primer_p2>
		<pcr_amplicon_size>282</pcr_amplicon_size>
		<canonical_amplicon>AGCGGAATGGTATACAAAAAAGAAACGAAAAAAGAAAAATATAAGATATATTACTCCATTTAGTTCTATCACTGATTGGACGTTGGAATTTTCGAAAAAGACAGTTGATCATCGAATTTAGAATTTTCGAACTTGAATTCATACATCTAGAATTACCGAGTTTCAGAATTTAGAATCTTCCAATTCAAAATTTCTGAATTTCGAAATTCTAATCTTTATAATTAAGAATTTCTAAATTTTGAATATTTGAGTTGTCTTACCTAGAGTTTCTGAGTTTATGGA</canonical_amplicon>
		<polymorphic_amplicon>AGCGGAATGGTATACAAAAAAGAAACGAAAAAAGAAAAATATAAGATATATTACTCCATTTAGTTCTATCACTGATTGGACGTTGGAATTTTCGAAAAAGACAGTTGATCATCGAATTTAGAATTTTCGAAYTTGAATTCATACATCTAGAATTACCGAGTTTCAGAATTTAGAATCTTCCAATTCAAAATTTCTGAATTTCGAAATTCTAATCTTTATAATTAAGAATTTCTAAATTTTGAATATTTGAGTTGTCTTACCTAGAGTTTCTGAGTTTATGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27686</snp_id>
        <super_contig>c003201106.Contig1</super_contig>
        <contig_pos>307920</contig_pos>
        <strand></strand>
        <context>ctaatcttta[T/C]aattaagaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTAGAATCTTCCAATTCAAAATTTCTGAATTTCGAAATTCTAATCTTTA</left_flank>
        <right_flank>AATTAAGAATTTCTAAATTTTGAATATTTGAGTTGTCTTACCTAGAGTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTGAAAACCACTCCAACTAAGACTCAAGAATTTGTCACCAGTGGATGCAATAAGCTTTACAATAACCTCCCAGGAATGTAAAGCTTAGCCTGCCAAATATTTTCCGATTTCTAAATAAACTCATTCATCTGCATAAACGTTTGTAGCGAGCACGTTAATTCGAAAAGATGCCAAAATCTGAAAATTGGATACACAGTTTTCAAATTCTGATCCAGACCTTCCAGGCGCAGCCGTTTAATAGTTGGTCAAATATCGTCTGACGGATGTTTCTTCTGCGGAAGCGGAATGGTATACAAAAAAGAAACGAAAAAAGAAAAATATAAGATATATTACTCCATTTAGTTCTATCACTGATTGGACGTTGGAATTTTCGAAAAAGACAGTTGATCATCGAATTTAGAATTTTCGAACTTGAATTCATACATCTAGAATTACCGAGTTTCAGAATTTAGAATCTTCCAATTCAAAATTTCTGAATTTCGAAATTCTAATCTTTATAATTAAGAATTTCTAAATTTTGAATATTTGAGTTGTCTTACCTAGAGTTTCTGAGTTTATGGATATTGTGTTCCAAACTTCAATCCTCTGAATTGTTGAATTTCCGAATTTTCGAACAGCTGGATTTTTGAATTTAGATTCCTTGAAATGATTGTCTTCAGCTTTTGTTTTCAATGATTAGAGAAACTGCCCACACTGTTACCTGACACGCTTTGACATACTCTTGACCATCTGCTTTCAATGGGAAGAGTAAATAAGTGATGGCTCAAAATTAGGCGGTTTTAAAACAATAACAGATTATGGTCGGGCAAACGTCATAATTAGGTGTGAATTACCGTCATAATTGGCGTAGCATTCTTGATATGTCTACAGTGGGCGGAGCTGCAAGAGTACACAATAAACAAGAGATGGTTCAAATTTTTAAATTAACAGTGGTTCGAAAACAGTAATCTACTTCTTACTAAGGAAACTTTTCTGTGTGTGTGTGTGTCCGTCTCGGA</canonical>
            <polymorphic>GTTTGAAAACCACTCCAACTAAGACTCAAGAATTTGTCACCAGTGGATGCAATAAGCTTTACAATAACCTCCCAGGAATGTAAAGCTTAGCCTGCCAAATATTTTCCGATTTCTAAATAAACTCATTCATCTGCATAAACGTTTGTAGCGAGCACGTTAATTCGAAAAGATGCCAAAATCTGAAAATTGGATACACAGTTTTCAAATTCTGATCCAGACCTTCCAGGCGCAGCCGTTTAATAGTTGGTCAAATATCGTCTGACGGATGTTTCTTCTGCGGAAGCGGAATGGTATACAAAAAAGAAACGAAAAAAGAAAAATATAAGATATATTACTCCATTTAGTTCTATCACTGATTGGACGTTGGAATTTTCGAAAAAGACAGTTGATCATCGAATTTAGAATTTTCGAACTTGAATTCATACATCTAGAATTACCGAGTTTCAGAATTTAGAATCTTCCAATTCAAAATTTCTGAATTTCGAAATTCTAATCTTTAYAATTAAGAATTTCTAAATTTTGAATATTTGAGTTGTCTTACCTAGAGTTTCTGAGTTTATGGATATTGTGTTCCAAACTTCAATCCTCTGAATTGTTGAATTTCCGAATTTTCGAACAGCTGGATTTTTGAATTTAGATTCCTTGAAATGATTGTCTTCAGCTTTTGTTTTCAATGATTAGAGAAACTGCCCACACTGTTACCTGACACGCTTTGACATACTCTTGACCATCTGCTTTCAATGGGAAGAGTAAATAAGTGATGGCTCAAAATTAGGCGGTTTTAAAACAATAACAGATTATGGTCGGGCAAACGTCATAATTAGGTGTGAATTACCGTCATAATTGGCGTAGCATTCTTGATATGTCTACAGTGGGCGGAGCTGCAAGAGTACACAATAAACAAGAGATGGTTCAAATTTTTAAATTAACAGTGGTTCGAAAACAGTAATCTACTTCTTACTAAGGAAACTTTTCTGTGTGTGTGTGTGTCCGTCTCGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCGGAATGGTATACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TCCATAAACTCAGAAACTCTAGG</pcr_primer_p2>
		<pcr_amplicon_size>282</pcr_amplicon_size>
		<canonical_amplicon>AGCGGAATGGTATACAAAAAAGAAACGAAAAAAGAAAAATATAAGATATATTACTCCATTTAGTTCTATCACTGATTGGACGTTGGAATTTTCGAAAAAGACAGTTGATCATCGAATTTAGAATTTTCGAACTTGAATTCATACATCTAGAATTACCGAGTTTCAGAATTTAGAATCTTCCAATTCAAAATTTCTGAATTTCGAAATTCTAATCTTTATAATTAAGAATTTCTAAATTTTGAATATTTGAGTTGTCTTACCTAGAGTTTCTGAGTTTATGGA</canonical_amplicon>
		<polymorphic_amplicon>AGCGGAATGGTATACAAAAAAGAAACGAAAAAAGAAAAATATAAGATATATTACTCCATTTAGTTCTATCACTGATTGGACGTTGGAATTTTCGAAAAAGACAGTTGATCATCGAATTTAGAATTTTCGAACTTGAATTCATACATCTAGAATTACCGAGTTTCAGAATTTAGAATCTTCCAATTCAAAATTTCTGAATTTCGAAATTCTAATCTTTAYAATTAAGAATTTCTAAATTTTGAATATTTGAGTTGTCTTACCTAGAGTTTCTGAGTTTATGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27687</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>84267</contig_pos>
        <strand>+</strand>
        <context>GTCAAAGGTG[A/C]TCTGGAAGCC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGGCGATGAAGCTTCAGAGCTCTAGCAAGCTTCAAGATGGGTCAAAGGTG</left_flank>
        <right_flank>TCTGGAAGCCTCTGGTCACGATATACTCGAGCTGAAGCTTGAATGCCAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGTTGGATTTGATATATTTGATCTATACCGCGCGAGCTGAAATTCTGAAATTCAAACTATCGGCATGTTTCGCGTCGTTCATTCTCTCGTTTTTTCGCATTTTTCCATATTTTTCCCCTTTTTTGTGTTGGTTGTGTCCGCTGAAAGCCATTTGTATGCTACGTGGCAAATTCGCTTTTCGAGACGACTTCCAGAGGATGTTCTTGGCGAAAGGCATCGGCGAATTTAGCTGGAACTTGCCACGTGGCAAAAAAGCATTGGGGTTTTTGCTGAAAATTGCGTTGCGATGAAGTTTGTTCGCTCCAAAATGAGTCAAATGTGCTCCGGAAGCCCAATGATTCAGCTGAAGCTGGAATTCAGCTCACCGCCCGTTTTTCATCGTTGCCGTTTTGACGATTAGGCTTAGTGCTTGCCACGTGGAATCGAATTCAGCTGGAATTCGCCACGTGGCGATGAAGCTTCAGAGCTCTAGCAAGCTTCAAGATGGGTCAAAGGTGCTCTGGAAGCCTCTGGTCACGATATACTCGAGCTGAAGCTTGAATGCCAGCTCGCCACATGGTATCTAGGCTAACAACCGACATTTTTGCTGAATTACGAGGTCGTACAATCGATTTCAAGTCATTGTTCTCAGACGAGAAATCCTCTCTTTATACAGTTTGCGCGAAGAAGACACATTGGTTGTCGAGGGGACGACTATGAAAGAATAGAATATAAGAAAGGAAAAAAAAGGAGAAAAAGTCTCATTTTCTCTCTTTCTCTTTCTCTCTCTATACAGTCTAAAACAAAAAAAAAACTGGTCCGCCCGACACTGTATGTCAGAAGTGTGTTTTCGTTCTCTTTCTCTAACCCAACCATTTTATACCTCTTCTTCTTATTGTCTCCGGACACATGCGCGAATGTCCTGAAGGTGATAGAGAGTAGAGGAATAGAGAAGCACAGAGAGTTGTGTTGTAGTAGAAGGGAAGGGTCCCCCAAGCAGTCGATATTTGTCTCTTTTT</canonical>
            <polymorphic>ACAGTTGGATTTGATATATTTGATCTATACCGCGCGAGCTGAAATTCTGAAATTCAAACTATCGGCATGTTTCGCGTCGTTCATTCTCTCGTTTTTTCGCATTTTTCCATATTTTTCCCCTTTTTTGTGTTGGTTGTGTCCGCTGAAAGCCATTTGTATGCTACGTGGCAAATTCGCTTTTCGAGACGACTTCCAGAGGATGTTCTTGGCGAAAGGCATCGGCGAATTTAGCTGGAACTTGCCACGTGGCAAAAAAGCATTGGGGTTTTTGCTGAAAATTGCGTTGCGATGAAGTTTGTTCGCTCCAAAATGAGTCAAATGTGCTCCGGAAGCCCAATGATTCAGCTGAAGCTGGAATTCAGCTCACCGCCCGTTTTTCATCGTTGCCGTTTTGACGATTAGGCTTAGTGCTTGCCACGTGGAATCGAATTCAGCTGGAATTCGCCACGTGGCGATGAAGCTTCAGAGCTCTAGCAAGCTTCAAGATGGGTCAAAGGTGMTCTGGAAGCCTCTGGTCACGATATACTCGAGCTGAAGCTTGAATGCCAGCTCGCCACATGGTATCTAGGCTAACAACCGACATTTTTGCTGAATTACGAGGTCGTACAATCGATTTCAAGTCATTGTTCTCAGACGAGAAATCCTCTCTTTATACAGTTTGCGCGAAGAAGACACATTGGTTGTCGAGGGGACGACTATGAAAGAATAGAATATAAGAAAGGAAAAAAAAGGAGAAAAAGTCTCATTTTCTCTCTTTCTCTTTCTCTCTCTATACAGTCTAAAACAAAAAAAAAACTGGTCCGCCCGACACTGTATGTCAGAAGTGTGTTTTCGTTCTCTTTCTCTAACCCAACCATTTTATACCTCTTCTTCTTATTGTCTCCGGACACATGCGCGAATGTCCTGAAGGTGATAGAGAGTAGAGGAATAGAGAAGCACAGAGAGTTGTGTTGTAGTAGAAGGGAAGGGTCCCCCAAGCAGTCGATATTTGTCTCTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>499 325 145 31</canonical_bands>
                <polymorphic_bands>530 325 145</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>499 325 145 31</canonical_bands>
                <polymorphic_bands>530 325 145</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>495 176 157 101 71</canonical_bands>
                <polymorphic_bands>671 157 101 71</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTGACGATTAGGCTTAGTG</pcr_primer_p1>
		<pcr_primer_p2>GTCTGAGAACAATGACTTGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTTTTGACGATTAGGCTTAGTGCTTGCCACGTGGAATCGAATTCAGCTGGAATTCGCCACGTGGCGATGAAGCTTCAGAGCTCTAGCAAGCTTCAAGATGGGTCAAAGGTGCTCTGGAAGCCTCTGGTCACGATATACTCGAGCTGAAGCTTGAATGCCAGCTCGCCACATGGTATCTAGGCTAACAACCGACATTTTTGCTGAATTACGAGGTCGTACAATCGATTTCAAGTCATTGTTCTCAGAC</canonical_amplicon>
		<polymorphic_amplicon>GTTTTGACGATTAGGCTTAGTGCTTGCCACGTGGAATCGAATTCAGCTGGAATTCGCCACGTGGCGATGAAGCTTCAGAGCTCTAGCAAGCTTCAAGATGGGTCAAAGGTGMTCTGGAAGCCTCTGGTCACGATATACTCGAGCTGAAGCTTGAATGCCAGCTCGCCACATGGTATCTAGGCTAACAACCGACATTTTTGCTGAATTACGAGGTCGTACAATCGATTTCAAGTCATTGTTCTCAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27688</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97150</contig_pos>
        <strand>+</strand>
        <context>CATGCTTCAG[A/T]TTATYACAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAG</left_flank>
        <right_flank>TTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCGCGAGTGGACATCAATTGTAGTGTGAGCTCGAAAACCAGTCGGGGTAATCGGAATAATTTAAAAGTTTTCTTCGCCATTGAAAACAACTAATAGATATGGGAAACTATGTCACTGTTAGAACTCTGATCCTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTC</canonical>
            <polymorphic>ATTTCGCGAGTGGACATCAATTGTAGTGTGAGCTCGAAAACCAGTCGGGGTAATCGGAATAATTTAAAAGTTTTCTTCGCCATTGAAAACAACTAATAGATATGGGAAACTATGTCACTGTTAGAACTCTGATCCTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGWTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTGATTACAGAAGGTTGTGA</pcr_primer_p1>
		<pcr_primer_p2>TATTTGAACGCCAATAATATTTC</pcr_primer_p2>
		<pcr_amplicon_size>367</pcr_amplicon_size>
		<canonical_amplicon>GAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</canonical_amplicon>
		<polymorphic_amplicon>GAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGWTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27689</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97155</contig_pos>
        <strand>+</strand>
        <context>TTCAGWTTAT[C/T]ACAGTTTCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTAT</left_flank>
        <right_flank>ACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGAGTGGACATCAATTGTAGTGTGAGCTCGAAAACCAGTCGGGGTAATCGGAATAATTTAAAAGTTTTCTTCGCCATTGAAAACAACTAATAGATATGGGAAACTATGTCACTGTTAGAACTCTGATCCTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTC</canonical>
            <polymorphic>GCGAGTGGACATCAATTGTAGTGTGAGCTCGAAAACCAGTCGGGGTAATCGGAATAATTTAAAAGTTTTCTTCGCCATTGAAAACAACTAATAGATATGGGAAACTATGTCACTGTTAGAACTCTGATCCTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATYACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTGATTACAGAAGGTTGTGA</pcr_primer_p1>
		<pcr_primer_p2>TATTTGAACGCCAATAATATTTC</pcr_primer_p2>
		<pcr_amplicon_size>367</pcr_amplicon_size>
		<canonical_amplicon>GAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</canonical_amplicon>
		<polymorphic_amplicon>GAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATYACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27690</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97169</contig_pos>
        <strand>+</strand>
        <context>GTTTCAGAAT[G/T]RRGTACAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAAT</left_flank>
        <right_flank>AGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGTAGTGTGAGCTCGAAAACCAGTCGGGGTAATCGGAATAATTTAAAAGTTTTCTTCGCCATTGAAAACAACTAATAGATATGGGAAACTATGTCACTGTTAGAACTCTGATCCTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAAC</canonical>
            <polymorphic>ATTGTAGTGTGAGCTCGAAAACCAGTCGGGGTAATCGGAATAATTTAAAAGTTTTCTTCGCCATTGAAAACAACTAATAGATATGGGAAACTATGTCACTGTTAGAACTCTGATCCTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATKAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>222 191 97 68 65 59 54 41 37 31 28 27 27 21 21 11</canonical_bands>
                <polymorphic_bands>222 191 97 93 68 59 54 41 37 31 27 27 21 21 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAGAGGATAATGAACAAG</pcr_primer_p1>
		<pcr_primer_p2>TATTTGAACGCCAATAATATTTC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATKAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27691</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97170</contig_pos>
        <strand>+</strand>
        <context>TTTCAGAATK[A/G]RGTACAGTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATT</left_flank>
        <right_flank>GGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTAGTGTGAGCTCGAAAACCAGTCGGGGTAATCGGAATAATTTAAAAGTTTTCTTCGCCATTGAAAACAACTAATAGATATGGGAAACTATGTCACTGTTAGAACTCTGATCCTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACT</canonical>
            <polymorphic>TTGTAGTGTGAGCTCGAAAACCAGTCGGGGTAATCGGAATAATTTAAAAGTTTTCTTCGCCATTGAAAACAACTAATAGATATGGGAAACTATGTCACTGTTAGAACTCTGATCCTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTRGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAGAGGATAATGAACAAG</pcr_primer_p1>
		<pcr_primer_p2>TATTTGAACGCCAATAATATTTC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTRGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27692</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97171</contig_pos>
        <strand>+</strand>
        <context>TTCAGAATKR[A/G]GTACAGTTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTA</left_flank>
        <right_flank>GTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTAGTGTGAGCTCGAAAACCAGTCGGGGTAATCGGAATAATTTAAAAGTTTTCTTCGCCATTGAAAACAACTAATAGATATGGGAAACTATGTCACTGTTAGAACTCTGATCCTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTC</canonical>
            <polymorphic>TGTAGTGTGAGCTCGAAAACCAGTCGGGGTAATCGGAATAATTTAAAAGTTTTCTTCGCCATTGAAAACAACTAATAGATATGGGAAACTATGTCACTGTTAGAACTCTGATCCTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTARGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAGAGGATAATGAACAAG</pcr_primer_p1>
		<pcr_primer_p2>TATTTGAACGCCAATAATATTTC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTARGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27693</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97183</contig_pos>
        <strand>+</strand>
        <context>TACAGTTAAT[A/G]TTATRACAKC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAAT</left_flank>
        <right_flank>TTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAAAACCAGTCGGGGTAATCGGAATAATTTAAAAGTTTTCTTCGCCATTGAAAACAACTAATAGATATGGGAAACTATGTCACTGTTAGAACTCTGATCCTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAA</canonical>
            <polymorphic>TCGAAAACCAGTCGGGGTAATCGGAATAATTTAAAAGTTTTCTTCGCCATTGAAAACAACTAATAGATATGGGAAACTATGTCACTGTTAGAACTCTGATCCTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATRTTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 244 150 107</canonical_bands>
                <polymorphic_bands>743 150 107</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAGAGGATAATGAACAAG</pcr_primer_p1>
		<pcr_primer_p2>TATTTGAACGCCAATAATATTTC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATRTTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27694</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97188</contig_pos>
        <strand>+</strand>
        <context>TTAATRTTAT[A/G]ACAKCAATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTAT</left_flank>
        <right_flank>ACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCAGTCGGGGTAATCGGAATAATTTAAAAGTTTTCTTCGCCATTGAAAACAACTAATAGATATGGGAAACTATGTCACTGTTAGAACTCTGATCCTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTAT</canonical>
            <polymorphic>AACCAGTCGGGGTAATCGGAATAATTTAAAAGTTTTCTTCGCCATTGAAAACAACTAATAGATATGGGAAACTATGTCACTGTTAGAACTCTGATCCTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATRACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>498 337 165</canonical_bands>
                <polymorphic_bands>663 337</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAGAGGATAATGAACAAG</pcr_primer_p1>
		<pcr_primer_p2>TATTTGAACGCCAATAATATTTC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATRACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27695</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97192</contig_pos>
        <strand>+</strand>
        <context>TRTTATRACA[G/T]CAATTGATTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACA</left_flank>
        <right_flank>CAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCGGGGTAATCGGAATAATTTAAAAGTTTTCTTCGCCATTGAAAACAACTAATAGATATGGGAAACTATGTCACTGTTAGAACTCTGATCCTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTAT</canonical>
            <polymorphic>AGTCGGGGTAATCGGAATAATTTAAAAGTTTTCTTCGCCATTGAAAACAACTAATAGATATGGGAAACTATGTCACTGTTAGAACTCTGATCCTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAKCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAGAGGATAATGAACAAG</pcr_primer_p1>
		<pcr_primer_p2>TATTTGAACGCCAATAATATTTC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAKCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27696</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97206</contig_pos>
        <strand>+</strand>
        <context>TTGATTATTG[A/C]TCATCAKATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTG</left_flank>
        <right_flank>TCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATAATTTAAAAGTTTTCTTCGCCATTGAAAACAACTAATAGATATGGGAAACTATGTCACTGTTAGAACTCTGATCCTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATG</canonical>
            <polymorphic>GAATAATTTAAAAGTTTTCTTCGCCATTGAAAACAACTAATAGATATGGGAAACTATGTCACTGTTAGAACTCTGATCCTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGMTCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>334 175 156 96 90 75 74</canonical_bands>
                <polymorphic_bands>430 175 156 90 75 74</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAGAGGATAATGAACAAG</pcr_primer_p1>
		<pcr_primer_p2>TATTTGAACGCCAATAATATTTC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGMTCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27697</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97213</contig_pos>
        <strand>+</strand>
        <context>TTGMTCATCA[G/T]ATAYTCCTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCA</left_flank>
        <right_flank>ATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAAGTTTTCTTCGCCATTGAAAACAACTAATAGATATGGGAAACTATGTCACTGTTAGAACTCTGATCCTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATT</canonical>
            <polymorphic>TTAAAAGTTTTCTTCGCCATTGAAAACAACTAATAGATATGGGAAACTATGTCACTGTTAGAACTCTGATCCTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCAKATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAGAGGATAATGAACAAG</pcr_primer_p1>
		<pcr_primer_p2>TATTTGAACGCCAATAATATTTC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCAKATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27698</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97217</contig_pos>
        <strand>+</strand>
        <context>TCATCAKATA[C/T]TCCTAATCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATA</left_flank>
        <right_flank>TCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTTTCTTCGCCATTGAAAACAACTAATAGATATGGGAAACTATGTCACTGTTAGAACTCTGATCCTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTC</canonical>
            <polymorphic>AAGTTTTCTTCGCCATTGAAAACAACTAATAGATATGGGAAACTATGTCACTGTTAGAACTCTGATCCTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATAYTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAGAGGATAATGAACAAG</pcr_primer_p1>
		<pcr_primer_p2>TATTTGAACGCCAATAATATTTC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATAYTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27699</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97229</contig_pos>
        <strand>+</strand>
        <context>CCTAATCGAA[C/T]GAATTCATTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAA</left_flank>
        <right_flank>GAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATTGAAAACAACTAATAGATATGGGAAACTATGTCACTGTTAGAACTCTGATCCTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCC</canonical>
            <polymorphic>CCATTGAAAACAACTAATAGATATGGGAAACTATGTCACTGTTAGAACTCTGATCCTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAAYGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAGAGGATAATGAACAAG</pcr_primer_p1>
		<pcr_primer_p2>TATTTGAACGCCAATAATATTTC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAAYGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27700</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97241</contig_pos>
        <strand>+</strand>
        <context>AATTCATTAC[A/G]AATTGTATCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTAC</left_flank>
        <right_flank>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTAATAGATATGGGAAACTATGTCACTGTTAGAACTCTGATCCTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTT</canonical>
            <polymorphic>ACTAATAGATATGGGAAACTATGTCACTGTTAGAACTCTGATCCTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACRAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAGAGGATAATGAACAAG</pcr_primer_p1>
		<pcr_primer_p2>TATTTGAACGCCAATAATATTTC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACRAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27701</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97266</contig_pos>
        <strand>+</strand>
        <context>CGGTTTCAAT[G/T]GCTTCYTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAAT</left_flank>
        <right_flank>GCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTGTTAGAACTCTGATCCTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAA</canonical>
            <polymorphic>ACTGTTAGAACTCTGATCCTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATKGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>504 427 69</canonical_bands>
                <polymorphic_bands>573 427</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>222 191 95 70 65 59 54 41 37 31 28 27 27 21 21 11</canonical_bands>
                <polymorphic_bands>222 191 95 80 70 65 54 41 37 31 28 27 27 21 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAGAGGATAATGAACAAG</pcr_primer_p1>
		<pcr_primer_p2>TATTTGAACGCCAATAATATTTC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATKGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27702</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97272</contig_pos>
        <strand>+</strand>
        <context>CAATKGCTTC[C/T]TTCTCGAGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTC</left_flank>
        <right_flank>TTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAACTCTGATCCTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTT</canonical>
            <polymorphic>AGAACTCTGATCCTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCYTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAGAGGATAATGAACAAG</pcr_primer_p1>
		<pcr_primer_p2>TATTTGAACGCCAATAATATTTC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCYTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27703</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97283</contig_pos>
        <strand>+</strand>
        <context>TTCTCGAGTC[A/G]YGTWTCTYTK</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTC</left_flank>
        <right_flank>TGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAAC</canonical>
            <polymorphic>CCTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCRTGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>357 242 152 142 98 9</canonical_bands>
                <polymorphic_bands>384 357 152 98 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAGAGGATAATGAACAAG</pcr_primer_p1>
		<pcr_primer_p2>TATTTGAACGCCAATAATATTTC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCRTGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27704</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97284</contig_pos>
        <strand>+</strand>
        <context>TCTCGAGTCR[C/T]GTWTCTYTKA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCA</left_flank>
        <right_flank>GTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACA</canonical>
            <polymorphic>CTGTAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCAYGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>356 242 153 142 98 9</canonical_bands>
                <polymorphic_bands>384 356 153 98 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAGAGGATAATGAACAAG</pcr_primer_p1>
		<pcr_primer_p2>TATTTGAACGCCAATAATATTTC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCAYGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27705</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97287</contig_pos>
        <strand>+</strand>
        <context>CGAGTCRYGT[A/T]TCTYTKATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGT</left_flank>
        <right_flank>TCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGA</canonical>
            <polymorphic>TAGGGTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTWTCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAGAGGATAATGAACAAG</pcr_primer_p1>
		<pcr_primer_p2>TATTTGAACGCCAATAATATTTC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTWTCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27706</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97291</contig_pos>
        <strand>+</strand>
        <context>TCRYGTWTCT[C/T]TKATTTTCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCT</left_flank>
        <right_flank>TTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTA</canonical>
            <polymorphic>GTCAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTYTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAGAGGATAATGAACAAG</pcr_primer_p1>
		<pcr_primer_p2>TATTTGAACGCCAATAATATTTC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTYTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27707</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97293</contig_pos>
        <strand>+</strand>
        <context>RYGTWTCTYT[G/T]ATTTTCTGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCT</left_flank>
        <right_flank>ATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAA</canonical>
            <polymorphic>CAGAAGTCAATAAGAATTGATTGTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTKATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGTATCCAGTTCGGTTTC</pcr_primer_p1>
		<pcr_primer_p2>GGAACACTTGTATTGGATTATGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</canonical_amplicon>
		<polymorphic_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTKATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27708</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97315</contig_pos>
        <strand>+</strand>
        <context>CCGAATATAC[A/G]KATTCCARTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATAC</left_flank>
        <right_flank>TATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTT</canonical>
            <polymorphic>GTTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACRTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TACGTA</site>
                <isoschizomers>
                    <enzyme>BstSNI</enzyme>
                    <enzyme>Eco105I</enzyme>
                    <enzyme>SnaBI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>498 282 220</canonical_bands>
                <polymorphic_bands>718 282</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGTATCCAGTTCGGTTTC</pcr_primer_p1>
		<pcr_primer_p2>GGAACACTTGTATTGGATTATGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</canonical_amplicon>
		<polymorphic_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACRTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27709</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97316</contig_pos>
        <strand>+</strand>
        <context>CGAATATACR[G/T]ATTCCARTTY</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACG</left_flank>
        <right_flank>ATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTC</canonical>
            <polymorphic>TTTCGTAGTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGKATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TACGTA</site>
                <isoschizomers>
                    <enzyme>BstSNI</enzyme>
                    <enzyme>Eco105I</enzyme>
                    <enzyme>SnaBI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>497 283 220</canonical_bands>
                <polymorphic_bands>717 283</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGTATCCAGTTCGGTTTC</pcr_primer_p1>
		<pcr_primer_p2>GGAACACTTGTATTGGATTATGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</canonical_amplicon>
		<polymorphic_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGKATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27710</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97323</contig_pos>
        <strand>+</strand>
        <context>ACRKATTCCA[A/G]TTYTTCAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCA</left_flank>
        <right_flank>TTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGAT</canonical>
            <polymorphic>GTTTCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCARTTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>222 191 152 70 65 59 38 37 31 28 27 27 21 21 11</canonical_bands>
                <polymorphic_bands>222 191 152 90 70 65 38 37 28 27 27 21 21 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGTATCCAGTTCGGTTTC</pcr_primer_p1>
		<pcr_primer_p2>GGAACACTTGTATTGGATTATGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</canonical_amplicon>
		<polymorphic_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCARTTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27711</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97326</contig_pos>
        <strand>+</strand>
        <context>KATTCCARTT[C/T]TTCAAACMTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATT</left_flank>
        <right_flank>TTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGC</canonical>
            <polymorphic>TCCCACAGGATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTYTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGTATCCAGTTCGGTTTC</pcr_primer_p1>
		<pcr_primer_p2>GGAACACTTGTATTGGATTATGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</canonical_amplicon>
		<polymorphic_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTYTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27712</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97334</contig_pos>
        <strand>+</strand>
        <context>TTYTTCAAAC[A/C]TTCTTYTTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAAC</left_flank>
        <right_flank>TTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCA</canonical>
            <polymorphic>GATGAAACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACMTTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGTATCCAGTTCGGTTTC</pcr_primer_p1>
		<pcr_primer_p2>GGAACACTTGTATTGGATTATGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</canonical_amplicon>
		<polymorphic_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACMTTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27713</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97340</contig_pos>
        <strand>+</strand>
        <context>AAACMTTCTT[C/T]TTCGATKGTW</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTT</left_flank>
        <right_flank>TTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGC</canonical>
            <polymorphic>ACAAATCGATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTYTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGTATCCAGTTCGGTTTC</pcr_primer_p1>
		<pcr_primer_p2>GGAACACTTGTATTGGATTATGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</canonical_amplicon>
		<polymorphic_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTYTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27714</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97347</contig_pos>
        <strand>+</strand>
        <context>CTTYTTCGAT[G/T]GTWWTAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGAT</left_flank>
        <right_flank>GTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATA</canonical>
            <polymorphic>GATGGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATKGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGTATCCAGTTCGGTTTC</pcr_primer_p1>
		<pcr_primer_p2>GGAACACTTGTATTGGATTATGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</canonical_amplicon>
		<polymorphic_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATKGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27715</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97350</contig_pos>
        <strand>+</strand>
        <context>YTTCGATKGT[A/T]WTAATTTCRG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGT</left_flank>
        <right_flank>ATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAG</canonical>
            <polymorphic>GGGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTWATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>499 336 165</canonical_bands>
                <polymorphic_bands>664 336</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGTATCCAGTTCGGTTTC</pcr_primer_p1>
		<pcr_primer_p2>GGAACACTTGTATTGGATTATGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</canonical_amplicon>
		<polymorphic_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTWATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27716</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97351</contig_pos>
        <strand>+</strand>
        <context>TTCGATKGTW[A/T]TAATTTCRGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTT</left_flank>
        <right_flank>TAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGA</canonical>
            <polymorphic>GGATGCACCCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTWTAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 335 165</canonical_bands>
                <polymorphic_bands>665 335</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGTATCCAGTTCGGTTTC</pcr_primer_p1>
		<pcr_primer_p2>GGAACACTTGTATTGGATTATGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</canonical_amplicon>
		<polymorphic_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTWTAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27717</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97359</contig_pos>
        <strand>+</strand>
        <context>TWWTAATTTC[A/G]GTTTTYCTST</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTC</left_flank>
        <right_flank>GTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAA</canonical>
            <polymorphic>CCAATTCAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCRGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGTATCCAGTTCGGTTTC</pcr_primer_p1>
		<pcr_primer_p2>GGAACACTTGTATTGGATTATGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</canonical_amplicon>
		<polymorphic_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCRGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27718</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97365</contig_pos>
        <strand>+</strand>
        <context>TTTCRGTTTT[C/T]CTSTTCTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTT</left_flank>
        <right_flank>CTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATT</canonical>
            <polymorphic>CAAATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTYCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGTATCCAGTTCGGTTTC</pcr_primer_p1>
		<pcr_primer_p2>GGAACACTTGTATTGGATTATGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</canonical_amplicon>
		<polymorphic_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTYCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27719</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97368</contig_pos>
        <strand>+</strand>
        <context>CRGTTTTYCT[C/G]TTCTCCAGRT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCT</left_flank>
        <right_flank>TTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAG</canonical>
            <polymorphic>ATGATCCCTCCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTSTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGTATCCAGTTCGGTTTC</pcr_primer_p1>
		<pcr_primer_p2>GGAACACTTGTATTGGATTATGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</canonical_amplicon>
		<polymorphic_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTSTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27720</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97377</contig_pos>
        <strand>+</strand>
        <context>TSTTCTCCAG[A/G]TCAATTTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAG</left_flank>
        <right_flank>TCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGAC</canonical>
            <polymorphic>CCTTTTTTGTTGGCGTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGRTCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>327 327 175 96 75</canonical_bands>
                <polymorphic_bands>327 327 250 96</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>255 171 154 89 75 69 61 60 29 24 13</canonical_bands>
                <polymorphic_bands>255 171 158 154 75 61 60 29 24 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGTATCCAGTTCGGTTTC</pcr_primer_p1>
		<pcr_primer_p2>GGAACACTTGTATTGGATTATGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</canonical_amplicon>
		<polymorphic_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGRTCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27721</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97391</contig_pos>
        <strand>+</strand>
        <context>ATTTTCTTTT[C/G]TTTCAACTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTT</left_flank>
        <right_flank>TTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAA</canonical>
            <polymorphic>GTGTTTTTTGTGCAAGAGAAGGTTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTSTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGTATCCAGTTCGGTTTC</pcr_primer_p1>
		<pcr_primer_p2>GGAACACTTGTATTGGATTATGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</canonical_amplicon>
		<polymorphic_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTSTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27722</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97413</contig_pos>
        <strand>+</strand>
        <context>ACGAAGAAAC[C/T]RCRTCATTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAAC</left_flank>
        <right_flank>ACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAG</canonical>
            <polymorphic>TTTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACYACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGTATCCAGTTCGGTTTC</pcr_primer_p1>
		<pcr_primer_p2>GGAACACTTGTATTGGATTATGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</canonical_amplicon>
		<polymorphic_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACYACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27723</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97414</contig_pos>
        <strand>+</strand>
        <context>CGAAGAAACY[A/G]CRTCATTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACT</left_flank>
        <right_flank>CATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGT</canonical>
            <polymorphic>TTAGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTRCATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGTATCCAGTTCGGTTTC</pcr_primer_p1>
		<pcr_primer_p2>GGAACACTTGTATTGGATTATGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</canonical_amplicon>
		<polymorphic_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTRCATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27724</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97416</contig_pos>
        <strand>+</strand>
        <context>AAGAAACYRC[A/G]TCATTGAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTAC</left_flank>
        <right_flank>TCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGTCA</canonical>
            <polymorphic>AGGTCGTAAATCAGGTGACAAAACAAAACATTCATTCACAAATCACAAAAAAACGAAATAGTTGAAATAAGTCAGACGGAGCTCTGTCTGAAATACAGTAGCTCTCCAAGACTTATTCAGAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACRTCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGTATCCAGTTCGGTTTC</pcr_primer_p1>
		<pcr_primer_p2>GGAACACTTGTATTGGATTATGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</canonical_amplicon>
		<polymorphic_amplicon>AATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACRTCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27725</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97535</contig_pos>
        <strand>+</strand>
        <context>ATGCTGAAAY[G/T]TYTAGAYTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAAC</left_flank>
        <right_flank>TCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGTCAATTTTAGTTTTTTTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAACAATTTGTCAACTGATAAATTGTTTATCA</canonical>
            <polymorphic>GAAAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACKTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGTCAATTTTAGTTTTTTTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAACAATTTGTCAACTGATAAATTGTTTATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>502 278 220</canonical_bands>
                <polymorphic_bands>722 278</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATACCTCAAATGAAATGGTTC</pcr_primer_p1>
		<pcr_primer_p2>ATTAGTTTGAATTGAGTTGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAAT</canonical_amplicon>
		<polymorphic_amplicon>AATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACKTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27726</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97537</contig_pos>
        <strand>+</strand>
        <context>GCTGAAAYKT[C/T]TAGAYTTTYA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGT</left_flank>
        <right_flank>TAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGTCAATTTTAGTTTTTTTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAACAATTTGTCAACTGATAAATTGTTTATCATA</canonical>
            <polymorphic>AAAATCGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTYTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGTCAATTTTAGTTTTTTTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAACAATTTGTCAACTGATAAATTGTTTATCATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>361 154 89 75 69 61 60 54 29 24 13 11</canonical_bands>
                <polymorphic_bands>361 154 136 89 69 60 54 29 24 13 11</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATACCTCAAATGAAATGGTTC</pcr_primer_p1>
		<pcr_primer_p2>ATTAGTTTGAATTGAGTTGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAAT</canonical_amplicon>
		<polymorphic_amplicon>AATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTYTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27727</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97542</contig_pos>
        <strand>+</strand>
        <context>AAYKTYTAGA[C/T]TTTYATATGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGA</left_flank>
        <right_flank>TTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGTCAATTTTAGTTTTTTTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAACAATTTGTCAACTGATAAATTGTTTATCATAATATC</canonical>
            <polymorphic>CGAATCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGAYTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGTCAATTTTAGTTTTTTTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAACAATTTGTCAACTGATAAATTGTTTATCATAATATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATACCTCAAATGAAATGGTTC</pcr_primer_p1>
		<pcr_primer_p2>ATTAGTTTGAATTGAGTTGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAAT</canonical_amplicon>
		<polymorphic_amplicon>AATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGAYTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27728</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97546</contig_pos>
        <strand>+</strand>
        <context>TYTAGAYTTT[C/T]ATATGATCGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTT</left_flank>
        <right_flank>ATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGTCAATTTTAGTTTTTTTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAACAATTTGTCAACTGATAAATTGTTTATCATAATATCACTA</canonical>
            <polymorphic>TCGAGAAATTTATTCGAGAATCACAAAAATTGAACTGATTACAGAAGGTTGTGAAATTATCAAAAAATGGGTTTCCAGAGGATAATGAACAAGCATGCTTCAGTTTATTACAGTTTCAGAATTAGGTACAGTTAATATTATAACAGCAATTGATTATTGATCATCATATATTCCTAATCGAATGAATTCATTACAAATTGTATCCAGTTCGGTTTCAATTGCTTCTTTCTCGAGTCATGTATCTCTTATTTTCTGATCCCGAATATACGTATTCCAATTCTTCAAACATTCTTTTTCGATTGTTATAATTTCGGTTTTTCTCTTCTCCAGATCAATTTTCTTTTCTTTCAACTTCAACGAAGAAACTACATCATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTYATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGTCAATTTTAGTTTTTTTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAACAATTTGTCAACTGATAAATTGTTTATCATAATATCACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATATG</site>
                <isoschizomers>
                    <enzyme>FauNDI</enzyme>
                    <enzyme>NdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATACCTCAAATGAAATGGTTC</pcr_primer_p1>
		<pcr_primer_p2>ATTAGTTTGAATTGAGTTGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAAT</canonical_amplicon>
		<polymorphic_amplicon>AATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTYATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27729</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>97918</contig_pos>
        <strand>+</strand>
        <context>CAGTAGTCAA[C/T]TTTAGTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGTCAA</left_flank>
        <right_flank>TTTAGTTTTTTTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGTCAATTTTAGTTTTTTTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAACAATTTGTCAACTGATAAATTGTTTATCATAATATCACTAACATTTTATCAGTTGACATATTTTTGAAATCTTTTACGGGAACCGAGAAAAATAAACTCAAACTTGGCAGTGTAGATACCCTTCAATCACAGGTGGTAGATGTGAATTAATTTTTCATGTTTTTGGAAAACTTTCAAACTTATCCGTGATGACTTTAGGATCTCAAAATTGACAATTCCAGGCTAAAAACAAGAGAATTTGACTTAAAAACTCCAATATGAAACTATGTGAGTTGAGCATATTGAACAAAATTTCGGTCTCAAAAAAAAATTAATTTACCTTATTTCCTCTAATAGAAGACCACTCAAATCGGAAACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAAATTTGTAAACTAAT</canonical>
            <polymorphic>ATTGAAATATTATTGGCGTTCAAATACCTCAAATGAAATGGTTCAAGACTCATAATCCAATACAAGTGTTCCGATTGAAAACTTCTTTTTCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGTCAAYTTTAGTTTTTTTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAACAATTTGTCAACTGATAAATTGTTTATCATAATATCACTAACATTTTATCAGTTGACATATTTTTGAAATCTTTTACGGGAACCGAGAAAAATAAACTCAAACTTGGCAGTGTAGATACCCTTCAATCACAGGTGGTAGATGTGAATTAATTTTTCATGTTTTTGGAAAACTTTCAAACTTATCCGTGATGACTTTAGGATCTCAAAATTGACAATTCCAGGCTAAAAACAAGAGAATTTGACTTAAAAACTCCAATATGAAACTATGTGAGTTGAGCATATTGAACAAAATTTCGGTCTCAAAAAAAAATTAATTTACCTTATTTCCTCTAATAGAAGACCACTCAAATCGGAAACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAAATTTGTAAACTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>218 183 127 70 61 58 54 54 31 31 26 22 19 16 15 7 4 4</canonical_bands>
                <polymorphic_bands>218 183 127 87 70 58 54 54 31 31 22 19 16 15 7 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAAGAGACTCATCGTCACA</pcr_primer_p1>
		<pcr_primer_p2>CATGAAAAATTAATTCACATCTACC</pcr_primer_p2>
		<pcr_amplicon_size>298</pcr_amplicon_size>
		<canonical_amplicon>GAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGTCAATTTTAGTTTTTTTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAACAATTTGTCAACTGATAAATTGTTTATCATAATATCACTAACATTTTATCAGTTGACATATTTTTGAAATCTTTTACGGGAACCGAGAAAAATAAACTCAAACTTGGCAGTGTAGATACCCTTCAATCACAGGTGGTAGATGTGAATTAATTTTTCATG</canonical_amplicon>
		<polymorphic_amplicon>GAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGTCAAYTTTAGTTTTTTTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAACAATTTGTCAACTGATAAATTGTTTATCATAATATCACTAACATTTTATCAGTTGACATATTTTTGAAATCTTTTACGGGAACCGAGAAAAATAAACTCAAACTTGGCAGTGTAGATACCCTTCAATCACAGGTGGTAGATGTGAATTAATTTTTCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27730</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>98007</contig_pos>
        <strand></strand>
        <context>aagatatcaa[C/A]aatttgtcaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAA</left_flank>
        <right_flank>AATTTGTCAACTGATAAATTGTTTATCATAATATCACTAACATTTTATCA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGTCAATTTTAGTTTTTTTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAACAATTTGTCAACTGATAAATTGTTTATCATAATATCACTAACATTTTATCAGTTGACATATTTTTGAAATCTTTTACGGGAACCGAGAAAAATAAACTCAAACTTGGCAGTGTAGATACCCTTCAATCACAGGTGGTAGATGTGAATTAATTTTTCATGTTTTTGGAAAACTTTCAAACTTATCCGTGATGACTTTAGGATCTCAAAATTGACAATTCCAGGCTAAAAACAAGAGAATTTGACTTAAAAACTCCAATATGAAACTATGTGAGTTGAGCATATTGAACAAAATTTCGGTCTCAAAAAAAAATTAATTTACCTTATTTCCTCTAATAGAAGACCACTCAAATCGGAAACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAAATTTGTAAACTAATAAATTGTTTATCATATATCAAAAATATTTCATCAGTTGACCAATTTTTGATATCTAGCACAGGAGGGTGGTCTTCTATTAGAGGGAATA</canonical>
            <polymorphic>TCTGATTCTCAGTACCCATGCTGAAACGTCTAGACTTTCATATGATCGCTGTCTTTATGATTCTGAAATATTCCACTGAATAAAAGTTGTCAAGAATTTCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGTCAATTTTAGTTTTTTTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAAMAATTTGTCAACTGATAAATTGTTTATCATAATATCACTAACATTTTATCAGTTGACATATTTTTGAAATCTTTTACGGGAACCGAGAAAAATAAACTCAAACTTGGCAGTGTAGATACCCTTCAATCACAGGTGGTAGATGTGAATTAATTTTTCATGTTTTTGGAAAACTTTCAAACTTATCCGTGATGACTTTAGGATCTCAAAATTGACAATTCCAGGCTAAAAACAAGAGAATTTGACTTAAAAACTCCAATATGAAACTATGTGAGTTGAGCATATTGAACAAAATTTCGGTCTCAAAAAAAAATTAATTTACCTTATTTCCTCTAATAGAAGACCACTCAAATCGGAAACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAAATTTGTAAACTAATAAATTGTTTATCATATATCAAAAATATTTCATCAGTTGACCAATTTTTGATATCTAGCACAGGAGGGTGGTCTTCTATTAGAGGGAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGTGGATGACTGGAAAC</pcr_primer_p1>
		<pcr_primer_p2>AGTTTTCCAAAAACATGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAACAATTTGTCAACTGATAAATTGTTTATCATAATATCACTAACATTTTATCAGTTGACATATTTTTGAAATCTTTTACGGGAACCGAGAAAAATAAACTCAAACTTGGCAGTGTAGATACCCTTCAATCACAGGTGGTAGATGTGAATTAATTTTTCATGTTTTTGGAAAACT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAAMAATTTGTCAACTGATAAATTGTTTATCATAATATCACTAACATTTTATCAGTTGACATATTTTTGAAATCTTTTACGGGAACCGAGAAAAATAAACTCAAACTTGGCAGTGTAGATACCCTTCAATCACAGGTGGTAGATGTGAATTAATTTTTCATGTTTTTGGAAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27731</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>98105</contig_pos>
        <strand></strand>
        <context>aaaataaact[C/A]aaacttggca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TCAGTTGACATATTTTTGAAATCTTTTACGGGAACCGAGAAAAATAAACT</left_flank>
        <right_flank>AAACTTGGCAGTGTAGATACCCTTCAATCACAGGTGGTAGATGTGAATTA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGTCAATTTTAGTTTTTTTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAACAATTTGTCAACTGATAAATTGTTTATCATAATATCACTAACATTTTATCAGTTGACATATTTTTGAAATCTTTTACGGGAACCGAGAAAAATAAACTCAAACTTGGCAGTGTAGATACCCTTCAATCACAGGTGGTAGATGTGAATTAATTTTTCATGTTTTTGGAAAACTTTCAAACTTATCCGTGATGACTTTAGGATCTCAAAATTGACAATTCCAGGCTAAAAACAAGAGAATTTGACTTAAAAACTCCAATATGAAACTATGTGAGTTGAGCATATTGAACAAAATTTCGGTCTCAAAAAAAAATTAATTTACCTTATTTCCTCTAATAGAAGACCACTCAAATCGGAAACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAAATTTGTAAACTAATAAATTGTTTATCATATATCAAAAATATTTCATCAGTTGACCAATTTTTGATATCTAGCACAGGAGGGTGGTCTTCTATTAGAGGGAATACGATAGTGAGGTTCTGGAAAATCTGGAATTTCAAAACCTGGTTGTTTTACTGTAAAAATGGAAATTTGAATTAAAAAATTGAAGAAAGAACAGTTTCT</canonical>
            <polymorphic>TCACTTTTTTCTTCCTCATGACATCCATGCCGTCCCTTTTTCTTCGACTCTTCCCGTCCACAACTCAATTCAAACTAATGTATGTATCTCTGAAAAAAATGGTCCATTCTTCTACAAACGCCCCGAAAAAAAACTTCCTTCCAATATGACAGCTATCGTAAAAGTTTCGTTAGGAAACACGAGTTAAAAGGAGACACAAACGAGTCTCTTCGGATGATGGCACCGCCCATCCGGCTAAAATAGAGAAGTGAGAAAGGATTTAGAGAAGAGACTCATCGTCACACAATTTTCACACATTCCCTCAGTAGTCAATTTTAGTTTTTTTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAACAATTTGTCAACTGATAAATTGTTTATCATAATATCACTAACATTTTATCAGTTGACATATTTTTGAAATCTTTTACGGGAACCGAGAAAAATAAACTMAAACTTGGCAGTGTAGATACCCTTCAATCACAGGTGGTAGATGTGAATTAATTTTTCATGTTTTTGGAAAACTTTCAAACTTATCCGTGATGACTTTAGGATCTCAAAATTGACAATTCCAGGCTAAAAACAAGAGAATTTGACTTAAAAACTCCAATATGAAACTATGTGAGTTGAGCATATTGAACAAAATTTCGGTCTCAAAAAAAAATTAATTTACCTTATTTCCTCTAATAGAAGACCACTCAAATCGGAAACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAAATTTGTAAACTAATAAATTGTTTATCATATATCAAAAATATTTCATCAGTTGACCAATTTTTGATATCTAGCACAGGAGGGTGGTCTTCTATTAGAGGGAATACGATAGTGAGGTTCTGGAAAATCTGGAATTTCAAAACCTGGTTGTTTTACTGTAAAAATGGAAATTTGAATTAAAAAATTGAAGAAAGAACAGTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGTGGATGACTGGAAAC</pcr_primer_p1>
		<pcr_primer_p2>AGTTTTCCAAAAACATGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAACAATTTGTCAACTGATAAATTGTTTATCATAATATCACTAACATTTTATCAGTTGACATATTTTTGAAATCTTTTACGGGAACCGAGAAAAATAAACTCAAACTTGGCAGTGTAGATACCCTTCAATCACAGGTGGTAGATGTGAATTAATTTTTCATGTTTTTGGAAAACT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGTGGATGACTGGAAACGATCACTTGAATCGTCCACTTTGAGCTGAATTATCTTGATTCCAGTTAAAGATATCAACAATTTGTCAACTGATAAATTGTTTATCATAATATCACTAACATTTTATCAGTTGACATATTTTTGAAATCTTTTACGGGAACCGAGAAAAATAAACTMAAACTTGGCAGTGTAGATACCCTTCAATCACAGGTGGTAGATGTGAATTAATTTTTCATGTTTTTGGAAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27732</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>100341</contig_pos>
        <strand>+</strand>
        <context>GCATTCTCTG[A/C]AAAAAAAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCTGTTTTTATATTTTTCCTGTTTTCCGCTTATCCCAGAGCATTCTCTG</left_flank>
        <right_flank>AAAAAAAGAAAACAGAGAAATCTCTTTTCTCTTTTTTTCCATATAATCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTAATAGCTAGAAGTTCAAAGTTTGGCGGGAATTCAAAACATTCTGAGTTTCTTTCAAGAAACTTTCAAAAGTGGACCTTTGATGCAATTTTTCTGGAAACTCCCAGAGAGCCGCCTCATACTTCATGAGTTTGCTCTCTAAAATTCCACTTCATTTTTGCTCAATTATTCACATAAACATCACCAAGTTTCACCTTGAAATTCTCCACCCCCACCTTTTTTCATTCCATGTTTCTATTTTCTCAATCTTCTGACAACGACTAGAATATCAGAAACCGCAAGCCTCAAAACGCAGAAATACCTTTTTCTGTGCGTCTCCTAGTCTCCCCACACTATTTTTGCCTTCAATTACATCTGCCAATCAAGGCTCCACAAAACCACAAAACCTCAATCTTTTTTCTTTCTTTCTTTTCCACCTTCATTTCATTTTCCCTTCCCCCTTGTGTGTGCTGTTTTTATATTTTTCCTGTTTTCCGCTTATCCCAGAGCATTCTCTGAAAAAAAAGAAAACAGAGAAATCTCTTTTCTCTTTTTTTCCATATAATCACTTTCCACTTTCCACCTCAAAAACCCAACCATTATCATCGGGAATCGAGAAAATCGACTCCATTTTTCTCGATTTTGGGGTTTTTTCCGGTTTTTTGAAGATTTTTGTTGAGAGGTAAATTTTCTTTTTCGATCAGTGATCATGGAAGTTTTCCTAGCTAATCCAAAGAGAGCTTTTCTGGAAACTCCAGCTTTACTAGAAAATTCATTTGCTAGTCAGATAAGGGGCTGGATTTTGTCATTTATTGTTAGATTTGAGATCCAAAAACTTTGAAACTTTGAATTGAAACATTTTATAAATTCAAGTTGTTGTTAGGTACTCAATTACGCTGGCCAGTTAAAAAGCATTCTTCTCCTGAAATTCAAGAAAATCTGAAGTTTCTTATAGAAATCATAGATCATAGAAATTCGAAAAAAAGCCCCTTGAAAATTCAAAGTTCTGATAGGTTCAA</canonical>
            <polymorphic>TTCTAATAGCTAGAAGTTCAAAGTTTGGCGGGAATTCAAAACATTCTGAGTTTCTTTCAAGAAACTTTCAAAAGTGGACCTTTGATGCAATTTTTCTGGAAACTCCCAGAGAGCCGCCTCATACTTCATGAGTTTGCTCTCTAAAATTCCACTTCATTTTTGCTCAATTATTCACATAAACATCACCAAGTTTCACCTTGAAATTCTCCACCCCCACCTTTTTTCATTCCATGTTTCTATTTTCTCAATCTTCTGACAACGACTAGAATATCAGAAACCGCAAGCCTCAAAACGCAGAAATACCTTTTTCTGTGCGTCTCCTAGTCTCCCCACACTATTTTTGCCTTCAATTACATCTGCCAATCAAGGCTCCACAAAACCACAAAACCTCAATCTTTTTTCTTTCTTTCTTTTCCACCTTCATTTCATTTTCCCTTCCCCCTTGTGTGTGCTGTTTTTATATTTTTCCTGTTTTCCGCTTATCCCAGAGCATTCTCTGMAAAAAAAGAAAACAGAGAAATCTCTTTTCTCTTTTTTTCCATATAATCACTTTCCACTTTCCACCTCAAAAACCCAACCATTATCATCGGGAATCGAGAAAATCGACTCCATTTTTCTCGATTTTGGGGTTTTTTCCGGTTTTTTGAAGATTTTTGTTGAGAGGTAAATTTTCTTTTTCGATCAGTGATCATGGAAGTTTTCCTAGCTAATCCAAAGAGAGCTTTTCTGGAAACTCCAGCTTTACTAGAAAATTCATTTGCTAGTCAGATAAGGGGCTGGATTTTGTCATTTATTGTTAGATTTGAGATCCAAAAACTTTGAAACTTTGAATTGAAACATTTTATAAATTCAAGTTGTTGTTAGGTACTCAATTACGCTGGCCAGTTAAAAAGCATTCTTCTCCTGAAATTCAAGAAAATCTGAAGTTTCTTATAGAAATCATAGATCATAGAAATTCGAAAAAAAGCCCCTTGAAAATTCAAAGTTCTGATAGGTTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>269 225 207 155 67 47 19 11</canonical_bands>
                <polymorphic_bands>494 207 155 67 47 19 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTTTTGCCTTCAATTACATCT</pcr_primer_p1>
		<pcr_primer_p2>GATAATGGTTGGGTTTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATTTTTGCCTTCAATTACATCTGCCAATCAAGGCTCCACAAAACCACAAAACCTCAATCTTTTTTCTTTCTTTCTTTTCCACCTTCATTTCATTTTCCCTTCCCCCTTGTGTGTGCTGTTTTTATATTTTTCCTGTTTTCCGCTTATCCCAGAGCATTCTCTGAAAAAAAAGAAAACAGAGAAATCTCTTTTCTCTTTTTTTCCATATAATCACTTTCCACTTTCCACCTCAAAAACCCAACCATTATC</canonical_amplicon>
		<polymorphic_amplicon>TATTTTTGCCTTCAATTACATCTGCCAATCAAGGCTCCACAAAACCACAAAACCTCAATCTTTTTTCTTTCTTTCTTTTCCACCTTCATTTCATTTTCCCTTCCCCCTTGTGTGTGCTGTTTTTATATTTTTCCTGTTTTCCGCTTATCCCAGAGCATTCTCTGMAAAAAAAGAAAACAGAGAAATCTCTTTTCTCTTTTTTTCCATATAATCACTTTCCACTTTCCACCTCAAAAACCCAACCATTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27733</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>103577</contig_pos>
        <strand></strand>
        <context>ataagttcga[A/G]ctcaattatc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTACAAACTTATCTTTTAGCGGTATCACTGTAGATATCATAAGTTCGA</left_flank>
        <right_flank>CTCAATTATCTCGGCTCCTATGCAAGATATCGAAAATGTGTCAACTGATA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTCTTCTTCTTCCAACGATTTTTCCCTTCCCACACAAATGTTTGTATAATTGAGCAGAGGGTGGAGAAGGGAGAGGGAAAACTCATTCAGAAAACACTTCCGCTCCCCGAGAAAAAATGTCTGGACTTGGCTACCCAACAAAATTTGTATTCTTTTGAATATAAATTGTTTTCTTTTGAGCAGTTTGGGAACATTTGTACTTTTCCTGTTGTTTGTATTTTTGAGGGACTCCGCATGATTTTCTCCTAACAACAGGATGTTCTGATTGACCTCGGGATCCAGACGACAGGAGCCTCCACACTGCTAAGTTTGAGCTCAATTGTCTCGGTTCCTGTAAAAGATGTCAAGAATCTGTCAACTGATAAAATGTTTGTGACATTATGATAAACAATTTATCAGTTTTTAACTTTTTGATATCTTTTACAGGAAACGAGATAAATTGGCTCAAAGTACAAACTTATCTTTTAGCGGTATCACTGTAGATATCATAAGTTCGAACTCAATTATCTCGGCTCCTATGCAAGATATCGAAAATGTGTCAACTGATAAAACATTTATCTTATCATGATAAACATTTTATTAGTTGACAACGTTTTCATATCTTTCACAGGAACCGAAATATCTGGCTCAAAGTTAGTAGGTGATCCTTAAAGGTACCTCGGGCTCCAAATAATTATTTATGTTTCAAAAATAGTTTCTTCCACTAAATTACTGTTAACCGGAATCCAAGAACTAAATATTTTTCATATTTTCAGTGTTTTCTGAACTTTTTCGAATTCAAAATTTTTAGAGATTTTGAGTTATACAGAAACACTGATCAGAAAGATTGAAAAACTCAGATTTTCGAAAATTTTGAATTTCCAAAACCAGAATTTCAGAAATTCAAATTCTGGATTTTTAGAGTCGTCTTCATTATTGAAATTTTAGAACCATATTATCTTGGAACTTCATTTGGTTCTCTGGATTTCAATGTTTCTAGAGCCTTCATCTGGAGAATC</canonical>
            <polymorphic>CCTTCTTCTTCTTCCAACGATTTTTCCCTTCCCACACAAATGTTTGTATAATTGAGCAGAGGGTGGAGAAGGGAGAGGGAAAACTCATTCAGAAAACACTTCCGCTCCCCGAGAAAAAATGTCTGGACTTGGCTACCCAACAAAATTTGTATTCTTTTGAATATAAATTGTTTTCTTTTGAGCAGTTTGGGAACATTTGTACTTTTCCTGTTGTTTGTATTTTTGAGGGACTCCGCATGATTTTCTCCTAACAACAGGATGTTCTGATTGACCTCGGGATCCAGACGACAGGAGCCTCCACACTGCTAAGTTTGAGCTCAATTGTCTCGGTTCCTGTAAAAGATGTCAAGAATCTGTCAACTGATAAAATGTTTGTGACATTATGATAAACAATTTATCAGTTTTTAACTTTTTGATATCTTTTACAGGAAACGAGATAAATTGGCTCAAAGTACAAACTTATCTTTTAGCGGTATCACTGTAGATATCATAAGTTCGARCTCAATTATCTCGGCTCCTATGCAAGATATCGAAAATGTGTCAACTGATAAAACATTTATCTTATCATGATAAACATTTTATTAGTTGACAACGTTTTCATATCTTTCACAGGAACCGAAATATCTGGCTCAAAGTTAGTAGGTGATCCTTAAAGGTACCTCGGGCTCCAAATAATTATTTATGTTTCAAAAATAGTTTCTTCCACTAAATTACTGTTAACCGGAATCCAAGAACTAAATATTTTTCATATTTTCAGTGTTTTCTGAACTTTTTCGAATTCAAAATTTTTAGAGATTTTGAGTTATACAGAAACACTGATCAGAAAGATTGAAAAACTCAGATTTTCGAAAATTTTGAATTTCCAAAACCAGAATTTCAGAAATTCAAATTCTGGATTTTTAGAGTCGTCTTCATTATTGAAATTTTAGAACCATATTATCTTGGAACTTCATTTGGTTCTCTGGATTTCAATGTTTCTAGAGCCTTCATCTGGAGAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>496 278 154 72</canonical_bands>
                <polymorphic_bands>774 154 72</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGGATGTTCTGATTGACCT</pcr_primer_p1>
		<pcr_primer_p2>AGTGGAAGAAACTATTTTTGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>454</pcr_amplicon_size>
		<canonical_amplicon>ACAGGATGTTCTGATTGACCTCGGGATCCAGACGACAGGAGCCTCCACACTGCTAAGTTTGAGCTCAATTGTCTCGGTTCCTGTAAAAGATGTCAAGAATCTGTCAACTGATAAAATGTTTGTGACATTATGATAAACAATTTATCAGTTTTTAACTTTTTGATATCTTTTACAGGAAACGAGATAAATTGGCTCAAAGTACAAACTTATCTTTTAGCGGTATCACTGTAGATATCATAAGTTCGAACTCAATTATCTCGGCTCCTATGCAAGATATCGAAAATGTGTCAACTGATAAAACATTTATCTTATCATGATAAACATTTTATTAGTTGACAACGTTTTCATATCTTTCACAGGAACCGAAATATCTGGCTCAAAGTTAGTAGGTGATCCTTAAAGGTACCTCGGGCTCCAAATAATTATTTATGTTTCAAAAATAGTTTCTTCCACT</canonical_amplicon>
		<polymorphic_amplicon>ACAGGATGTTCTGATTGACCTCGGGATCCAGACGACAGGAGCCTCCACACTGCTAAGTTTGAGCTCAATTGTCTCGGTTCCTGTAAAAGATGTCAAGAATCTGTCAACTGATAAAATGTTTGTGACATTATGATAAACAATTTATCAGTTTTTAACTTTTTGATATCTTTTACAGGAAACGAGATAAATTGGCTCAAAGTACAAACTTATCTTTTAGCGGTATCACTGTAGATATCATAAGTTCGARCTCAATTATCTCGGCTCCTATGCAAGATATCGAAAATGTGTCAACTGATAAAACATTTATCTTATCATGATAAACATTTTATTAGTTGACAACGTTTTCATATCTTTCACAGGAACCGAAATATCTGGCTCAAAGTTAGTAGGTGATCCTTAAAGGTACCTCGGGCTCCAAATAATTATTTATGTTTCAAAAATAGTTTCTTCCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27734</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>103631</contig_pos>
        <strand></strand>
        <context>actgataaaa[C/T]atttatctta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTATCTCGGCTCCTATGCAAGATATCGAAAATGTGTCAACTGATAAAA</left_flank>
        <right_flank>ATTTATCTTATCATGATAAACATTTTATTAGTTGACAACGTTTTCATATC</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCAGAGGGTGGAGAAGGGAGAGGGAAAACTCATTCAGAAAACACTTCCGCTCCCCGAGAAAAAATGTCTGGACTTGGCTACCCAACAAAATTTGTATTCTTTTGAATATAAATTGTTTTCTTTTGAGCAGTTTGGGAACATTTGTACTTTTCCTGTTGTTTGTATTTTTGAGGGACTCCGCATGATTTTCTCCTAACAACAGGATGTTCTGATTGACCTCGGGATCCAGACGACAGGAGCCTCCACACTGCTAAGTTTGAGCTCAATTGTCTCGGTTCCTGTAAAAGATGTCAAGAATCTGTCAACTGATAAAATGTTTGTGACATTATGATAAACAATTTATCAGTTTTTAACTTTTTGATATCTTTTACAGGAAACGAGATAAATTGGCTCAAAGTACAAACTTATCTTTTAGCGGTATCACTGTAGATATCATAAGTTCGAACTCAATTATCTCGGCTCCTATGCAAGATATCGAAAATGTGTCAACTGATAAAACATTTATCTTATCATGATAAACATTTTATTAGTTGACAACGTTTTCATATCTTTCACAGGAACCGAAATATCTGGCTCAAAGTTAGTAGGTGATCCTTAAAGGTACCTCGGGCTCCAAATAATTATTTATGTTTCAAAAATAGTTTCTTCCACTAAATTACTGTTAACCGGAATCCAAGAACTAAATATTTTTCATATTTTCAGTGTTTTCTGAACTTTTTCGAATTCAAAATTTTTAGAGATTTTGAGTTATACAGAAACACTGATCAGAAAGATTGAAAAACTCAGATTTTCGAAAATTTTGAATTTCCAAAACCAGAATTTCAGAAATTCAAATTCTGGATTTTTAGAGTCGTCTTCATTATTGAAATTTTAGAACCATATTATCTTGGAACTTCATTTGGTTCTCTGGATTTCAATGTTTCTAGAGCCTTCATCTGGAGAATCGCGGTTTCCGGAAATTTCAAAATAACCGCTTTTCAGAAATTTTATAATATTTCA</canonical>
            <polymorphic>AGCAGAGGGTGGAGAAGGGAGAGGGAAAACTCATTCAGAAAACACTTCCGCTCCCCGAGAAAAAATGTCTGGACTTGGCTACCCAACAAAATTTGTATTCTTTTGAATATAAATTGTTTTCTTTTGAGCAGTTTGGGAACATTTGTACTTTTCCTGTTGTTTGTATTTTTGAGGGACTCCGCATGATTTTCTCCTAACAACAGGATGTTCTGATTGACCTCGGGATCCAGACGACAGGAGCCTCCACACTGCTAAGTTTGAGCTCAATTGTCTCGGTTCCTGTAAAAGATGTCAAGAATCTGTCAACTGATAAAATGTTTGTGACATTATGATAAACAATTTATCAGTTTTTAACTTTTTGATATCTTTTACAGGAAACGAGATAAATTGGCTCAAAGTACAAACTTATCTTTTAGCGGTATCACTGTAGATATCATAAGTTCGAACTCAATTATCTCGGCTCCTATGCAAGATATCGAAAATGTGTCAACTGATAAAAYATTTATCTTATCATGATAAACATTTTATTAGTTGACAACGTTTTCATATCTTTCACAGGAACCGAAATATCTGGCTCAAAGTTAGTAGGTGATCCTTAAAGGTACCTCGGGCTCCAAATAATTATTTATGTTTCAAAAATAGTTTCTTCCACTAAATTACTGTTAACCGGAATCCAAGAACTAAATATTTTTCATATTTTCAGTGTTTTCTGAACTTTTTCGAATTCAAAATTTTTAGAGATTTTGAGTTATACAGAAACACTGATCAGAAAGATTGAAAAACTCAGATTTTCGAAAATTTTGAATTTCCAAAACCAGAATTTCAGAAATTCAAATTCTGGATTTTTAGAGTCGTCTTCATTATTGAAATTTTAGAACCATATTATCTTGGAACTTCATTTGGTTCTCTGGATTTCAATGTTTCTAGAGCCTTCATCTGGAGAATCGCGGTTTCCGGAAATTTCAAAATAACCGCTTTTCAGAAATTTTATAATATTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGGATGTTCTGATTGACCT</pcr_primer_p1>
		<pcr_primer_p2>AGTGGAAGAAACTATTTTTGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>454</pcr_amplicon_size>
		<canonical_amplicon>ACAGGATGTTCTGATTGACCTCGGGATCCAGACGACAGGAGCCTCCACACTGCTAAGTTTGAGCTCAATTGTCTCGGTTCCTGTAAAAGATGTCAAGAATCTGTCAACTGATAAAATGTTTGTGACATTATGATAAACAATTTATCAGTTTTTAACTTTTTGATATCTTTTACAGGAAACGAGATAAATTGGCTCAAAGTACAAACTTATCTTTTAGCGGTATCACTGTAGATATCATAAGTTCGAACTCAATTATCTCGGCTCCTATGCAAGATATCGAAAATGTGTCAACTGATAAAACATTTATCTTATCATGATAAACATTTTATTAGTTGACAACGTTTTCATATCTTTCACAGGAACCGAAATATCTGGCTCAAAGTTAGTAGGTGATCCTTAAAGGTACCTCGGGCTCCAAATAATTATTTATGTTTCAAAAATAGTTTCTTCCACT</canonical_amplicon>
		<polymorphic_amplicon>ACAGGATGTTCTGATTGACCTCGGGATCCAGACGACAGGAGCCTCCACACTGCTAAGTTTGAGCTCAATTGTCTCGGTTCCTGTAAAAGATGTCAAGAATCTGTCAACTGATAAAATGTTTGTGACATTATGATAAACAATTTATCAGTTTTTAACTTTTTGATATCTTTTACAGGAAACGAGATAAATTGGCTCAAAGTACAAACTTATCTTTTAGCGGTATCACTGTAGATATCATAAGTTCGAACTCAATTATCTCGGCTCCTATGCAAGATATCGAAAATGTGTCAACTGATAAAAYATTTATCTTATCATGATAAACATTTTATTAGTTGACAACGTTTTCATATCTTTCACAGGAACCGAAATATCTGGCTCAAAGTTAGTAGGTGATCCTTAAAGGTACCTCGGGCTCCAAATAATTATTTATGTTTCAAAAATAGTTTCTTCCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27735</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>105196</contig_pos>
        <strand>+</strand>
        <context>ttACTTTCCT[A/G]AAGTTGTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCT</left_flank>
        <right_flank>AAGTTGTTTGTTAAATTTTTTTTACGATTTTCTTATTTTTTAATTTTCCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACTTCCCTTCTTTTTCTTCCACTCAATTTTCTCCATAGGTACTTCCTTCCCCTTCTTTTGGAAAACTGTGGGTTGACGTTCAGATTTTTGAAATTGAGGATTTTTCCTCTTTTGTTGAATCCATAATATTTCTAAACATAAGTTTTCCCACCTTCATTATTTTGGGTCTTATGAAAGTTTTATCAGCTGCGATGAAAATAGAAAATCGGAAAAAAAACGAGGATGGAATTTTTCATAGAGACGAATTCAGATTATCAGGATCTTTTGGATCTTAGAATCTTAGAATCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTGGAATCTTAGAATTTTAGAATCTTAGATTCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCTGAAGTTGTTTGTTAAATTTTTTTTACGATTTTCTTATTTTTTAATTTTCCAAGAATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTTTGCAAAAAACTTCCTTCAAATGTCCATCTGTCACCCATCCCTCAGGATCCCCATGAATTCTTCGTTCCATTTTTTTTTCCGAAAAAATTTCTTGCTGACATTTTAACGACAACATCTCATCCGTCCCATTCACACCCCTTTGAATTCCCAAAAAATTCTGAAAGTCAATTTCCATTTTTAGAAAAAAAAATTCTGCAAACTTTTCGAACAGAGGAAATTAAAATGGATTTTTTTGGTTGACAAAAAAGTGTGGGCGAAAAAATATAAGCGAAATCTGATGACTTTTTGGAGTTGAGAGAAATAGAGAAGTGCGTCAGTAGCCAGTGGTGACGCAGAAAAATACTACAAACAGAGATATAGATTCTTTGTGATTTTAGTGTACAAAAATAGGTACTGAA</canonical>
            <polymorphic>TCACTTCCCTTCTTTTTCTTCCACTCAATTTTCTCCATAGGTACTTCCTTCCCCTTCTTTTGGAAAACTGTGGGTTGACGTTCAGATTTTTGAAATTGAGGATTTTTCCTCTTTTGTTGAATCCATAATATTTCTAAACATAAGTTTTCCCACCTTCATTATTTTGGGTCTTATGAAAGTTTTATCAGCTGCGATGAAAATAGAAAATCGGAAAAAAAACGAGGATGGAATTTTTCATAGAGACGAATTCAGATTATCAGGATCTTTTGGATCTTAGAATCTTAGAATCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTGGAATCTTAGAATTTTAGAATCTTAGATTCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCTRAAGTTGTTTGTTAAATTTTTTTTACGATTTTCTTATTTTTTAATTTTCCAAGAATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTTTGCAAAAAACTTCCTTCAAATGTCCATCTGTCACCCATCCCTCAGGATCCCCATGAATTCTTCGTTCCATTTTTTTTTCCGAAAAAATTTCTTGCTGACATTTTAACGACAACATCTCATCCGTCCCATTCACACCCCTTTGAATTCCCAAAAAATTCTGAAAGTCAATTTCCATTTTTAGAAAAAAAAATTCTGCAAACTTTTCGAACAGAGGAAATTAAAATGGATTTTTTTGGTTGACAAAAAAGTGTGGGCGAAAAAATATAAGCGAAATCTGATGACTTTTTGGAGTTGAGAGAAATAGAGAAGTGCGTCAGTAGCCAGTGGTGACGCAGAAAAATACTACAAACAGAGATATAGATTCTTTGTGATTTTAGTGTACAAAAATAGGTACTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>355 258 239 148</canonical_bands>
                <polymorphic_bands>387 355 258</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCATAGAGACGAATTCAGATT</pcr_primer_p1>
		<pcr_primer_p2>GGACATTTGAAGGAAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>TTTCATAGAGACGAATTCAGATTATCAGGATCTTTTGGATCTTAGAATCTTAGAATCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTGGAATCTTAGAATTTTAGAATCTTAGATTCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCTGAAGTTGTTTGTTAAATTTTTTTTACGATTTTCTTATTTTTTAATTTTCCAAGAATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTTTGCAAAAAACTTCCTTCAAATGTCC</canonical_amplicon>
		<polymorphic_amplicon>TTTCATAGAGACGAATTCAGATTATCAGGATCTTTTGGATCTTAGAATCTTAGAATCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTGGAATCTTAGAATTTTAGAATCTTAGATTCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCTRAAGTTGTTTGTTAAATTTTTTTTACGATTTTCTTATTTTTTAATTTTCCAAGAATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTTTGCAAAAAACTTCCTTCAAATGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27736</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>105222</contig_pos>
        <strand></strand>
        <context>TTTTTTTTAC[G/A]ATTTTCTTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGAATTTCAGAATCTTACTTTCCTGAAGTTGTTTGTTAAATTTTTTTTAC</left_flank>
        <right_flank>ATTTTCTTATTTTTTAATTTTCCAAGAATTATCATGGGAAGAAAAAAAAG</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTCTCCATAGGTACTTCCTTCCCCTTCTTTTGGAAAACTGTGGGTTGACGTTCAGATTTTTGAAATTGAGGATTTTTCCTCTTTTGTTGAATCCATAATATTTCTAAACATAAGTTTTCCCACCTTCATTATTTTGGGTCTTATGAAAGTTTTATCAGCTGCGATGAAAATAGAAAATCGGAAAAAAAACGAGGATGGAATTTTTCATAGAGACGAATTCAGATTATCAGGATCTTTTGGATCTTAGAATCTTAGAATCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTGGAATCTTAGAATTTTAGAATCTTAGATTCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCTGAAGTTGTTTGTTAAATTTTTTTTACGATTTTCTTATTTTTTAATTTTCCAAGAATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTTTGCAAAAAACTTCCTTCAAATGTCCATCTGTCACCCATCCCTCAGGATCCCCATGAATTCTTCGTTCCATTTTTTTTTCCGAAAAAATTTCTTGCTGACATTTTAACGACAACATCTCATCCGTCCCATTCACACCCCTTTGAATTCCCAAAAAATTCTGAAAGTCAATTTCCATTTTTAGAAAAAAAAATTCTGCAAACTTTTCGAACAGAGGAAATTAAAATGGATTTTTTTGGTTGACAAAAAAGTGTGGGCGAAAAAATATAAGCGAAATCTGATGACTTTTTGGAGTTGAGAGAAATAGAGAAGTGCGTCAGTAGCCAGTGGTGACGCAGAAAAATACTACAAACAGAGATATAGATTCTTTGTGATTTTAGTGTACAAAAATAGGTACTGAAATCGAATTTTGAAAACCTGGTTTTTG</canonical>
            <polymorphic>AATTTTCTCCATAGGTACTTCCTTCCCCTTCTTTTGGAAAACTGTGGGTTGACGTTCAGATTTTTGAAATTGAGGATTTTTCCTCTTTTGTTGAATCCATAATATTTCTAAACATAAGTTTTCCCACCTTCATTATTTTGGGTCTTATGAAAGTTTTATCAGCTGCGATGAAAATAGAAAATCGGAAAAAAAACGAGGATGGAATTTTTCATAGAGACGAATTCAGATTATCAGGATCTTTTGGATCTTAGAATCTTAGAATCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTGGAATCTTAGAATTTTAGAATCTTAGATTCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCTGAAGTTGTTTGTTAAATTTTTTTTACRATTTTCTTATTTTTTAATTTTCCAAGAATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTTTGCAAAAAACTTCCTTCAAATGTCCATCTGTCACCCATCCCTCAGGATCCCCATGAATTCTTCGTTCCATTTTTTTTTCCGAAAAAATTTCTTGCTGACATTTTAACGACAACATCTCATCCGTCCCATTCACACCCCTTTGAATTCCCAAAAAATTCTGAAAGTCAATTTCCATTTTTAGAAAAAAAAATTCTGCAAACTTTTCGAACAGAGGAAATTAAAATGGATTTTTTTGGTTGACAAAAAAGTGTGGGCGAAAAAATATAAGCGAAATCTGATGACTTTTTGGAGTTGAGAGAAATAGAGAAGTGCGTCAGTAGCCAGTGGTGACGCAGAAAAATACTACAAACAGAGATATAGATTCTTTGTGATTTTAGTGTACAAAAATAGGTACTGAAATCGAATTTTGAAAACCTGGTTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCATAGAGACGAATTCAGATT</pcr_primer_p1>
		<pcr_primer_p2>GGACATTTGAAGGAAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>TTTCATAGAGACGAATTCAGATTATCAGGATCTTTTGGATCTTAGAATCTTAGAATCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTGGAATCTTAGAATTTTAGAATCTTAGATTCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCTGAAGTTGTTTGTTAAATTTTTTTTACGATTTTCTTATTTTTTAATTTTCCAAGAATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTTTGCAAAAAACTTCCTTCAAATGTCC</canonical_amplicon>
		<polymorphic_amplicon>TTTCATAGAGACGAATTCAGATTATCAGGATCTTTTGGATCTTAGAATCTTAGAATCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTGGAATCTTAGAATTTTAGAATCTTAGATTCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCTGAAGTTGTTTGTTAAATTTTTTTTACRATTTTCTTATTTTTTAATTTTCCAAGAATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTTTGCAAAAAACTTCCTTCAAATGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27737</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>105248</contig_pos>
        <strand>+</strand>
        <context>AATTTTCCAA[A/G]AATTATCATG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTGTTTGTTAAATTTTTTTTACGATTTTCTTATTTTTTAATTTTCCAA</left_flank>
        <right_flank>AATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTCTTTTGGAAAACTGTGGGTTGACGTTCAGATTTTTGAAATTGAGGATTTTTCCTCTTTTGTTGAATCCATAATATTTCTAAACATAAGTTTTCCCACCTTCATTATTTTGGGTCTTATGAAAGTTTTATCAGCTGCGATGAAAATAGAAAATCGGAAAAAAAACGAGGATGGAATTTTTCATAGAGACGAATTCAGATTATCAGGATCTTTTGGATCTTAGAATCTTAGAATCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTGGAATCTTAGAATTTTAGAATCTTAGATTCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCTGAAGTTGTTTGTTAAATTTTTTTTACGATTTTCTTATTTTTTAATTTTCCAAGAATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTTTGCAAAAAACTTCCTTCAAATGTCCATCTGTCACCCATCCCTCAGGATCCCCATGAATTCTTCGTTCCATTTTTTTTTCCGAAAAAATTTCTTGCTGACATTTTAACGACAACATCTCATCCGTCCCATTCACACCCCTTTGAATTCCCAAAAAATTCTGAAAGTCAATTTCCATTTTTAGAAAAAAAAATTCTGCAAACTTTTCGAACAGAGGAAATTAAAATGGATTTTTTTGGTTGACAAAAAAGTGTGGGCGAAAAAATATAAGCGAAATCTGATGACTTTTTGGAGTTGAGAGAAATAGAGAAGTGCGTCAGTAGCCAGTGGTGACGCAGAAAAATACTACAAACAGAGATATAGATTCTTTGTGATTTTAGTGTACAAAAATAGGTACTGAAATCGAATTTTGAAAACCTGGTTTTTGCGAATTTCAGATTTTGAGATTTTAAA</canonical>
            <polymorphic>CCTTCTTTTGGAAAACTGTGGGTTGACGTTCAGATTTTTGAAATTGAGGATTTTTCCTCTTTTGTTGAATCCATAATATTTCTAAACATAAGTTTTCCCACCTTCATTATTTTGGGTCTTATGAAAGTTTTATCAGCTGCGATGAAAATAGAAAATCGGAAAAAAAACGAGGATGGAATTTTTCATAGAGACGAATTCAGATTATCAGGATCTTTTGGATCTTAGAATCTTAGAATCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTGGAATCTTAGAATTTTAGAATCTTAGATTCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCTGAAGTTGTTTGTTAAATTTTTTTTACGATTTTCTTATTTTTTAATTTTCCAARAATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTTTGCAAAAAACTTCCTTCAAATGTCCATCTGTCACCCATCCCTCAGGATCCCCATGAATTCTTCGTTCCATTTTTTTTTCCGAAAAAATTTCTTGCTGACATTTTAACGACAACATCTCATCCGTCCCATTCACACCCCTTTGAATTCCCAAAAAATTCTGAAAGTCAATTTCCATTTTTAGAAAAAAAAATTCTGCAAACTTTTCGAACAGAGGAAATTAAAATGGATTTTTTTGGTTGACAAAAAAGTGTGGGCGAAAAAATATAAGCGAAATCTGATGACTTTTTGGAGTTGAGAGAAATAGAGAAGTGCGTCAGTAGCCAGTGGTGACGCAGAAAAATACTACAAACAGAGATATAGATTCTTTGTGATTTTAGTGTACAAAAATAGGTACTGAAATCGAATTTTGAAAACCTGGTTTTTGCGAATTTCAGATTTTGAGATTTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCATAGAGACGAATTCAGATT</pcr_primer_p1>
		<pcr_primer_p2>GGACATTTGAAGGAAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>TTTCATAGAGACGAATTCAGATTATCAGGATCTTTTGGATCTTAGAATCTTAGAATCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTGGAATCTTAGAATTTTAGAATCTTAGATTCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCTGAAGTTGTTTGTTAAATTTTTTTTACGATTTTCTTATTTTTTAATTTTCCAAGAATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTTTGCAAAAAACTTCCTTCAAATGTCC</canonical_amplicon>
		<polymorphic_amplicon>TTTCATAGAGACGAATTCAGATTATCAGGATCTTTTGGATCTTAGAATCTTAGAATCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTGGAATCTTAGAATTTTAGAATCTTAGATTCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCTGAAGTTGTTTGTTAAATTTTTTTTACGATTTTCTTATTTTTTAATTTTCCAARAATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTTTGCAAAAAACTTCCTTCAAATGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27738</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>105264</contig_pos>
        <strand>+</strand>
        <context>TCATGGGAAG[C/G]AAAAAAAGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTTTACGATTTTCTTATTTTTTAATTTTCCAAGAATTATCATGGGAAG</left_flank>
        <right_flank>AAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTTTGCAAAAAACTTCCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGGGTTGACGTTCAGATTTTTGAAATTGAGGATTTTTCCTCTTTTGTTGAATCCATAATATTTCTAAACATAAGTTTTCCCACCTTCATTATTTTGGGTCTTATGAAAGTTTTATCAGCTGCGATGAAAATAGAAAATCGGAAAAAAAACGAGGATGGAATTTTTCATAGAGACGAATTCAGATTATCAGGATCTTTTGGATCTTAGAATCTTAGAATCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTGGAATCTTAGAATTTTAGAATCTTAGATTCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCTGAAGTTGTTTGTTAAATTTTTTTTACGATTTTCTTATTTTTTAATTTTCCAAGAATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTTTGCAAAAAACTTCCTTCAAATGTCCATCTGTCACCCATCCCTCAGGATCCCCATGAATTCTTCGTTCCATTTTTTTTTCCGAAAAAATTTCTTGCTGACATTTTAACGACAACATCTCATCCGTCCCATTCACACCCCTTTGAATTCCCAAAAAATTCTGAAAGTCAATTTCCATTTTTAGAAAAAAAAATTCTGCAAACTTTTCGAACAGAGGAAATTAAAATGGATTTTTTTGGTTGACAAAAAAGTGTGGGCGAAAAAATATAAGCGAAATCTGATGACTTTTTGGAGTTGAGAGAAATAGAGAAGTGCGTCAGTAGCCAGTGGTGACGCAGAAAAATACTACAAACAGAGATATAGATTCTTTGTGATTTTAGTGTACAAAAATAGGTACTGAAATCGAATTTTGAAAACCTGGTTTTTGCGAATTTCAGATTTTGAGATTTTAAAAATGTGAGTTCTAAAA</canonical>
            <polymorphic>TGTGGGTTGACGTTCAGATTTTTGAAATTGAGGATTTTTCCTCTTTTGTTGAATCCATAATATTTCTAAACATAAGTTTTCCCACCTTCATTATTTTGGGTCTTATGAAAGTTTTATCAGCTGCGATGAAAATAGAAAATCGGAAAAAAAACGAGGATGGAATTTTTCATAGAGACGAATTCAGATTATCAGGATCTTTTGGATCTTAGAATCTTAGAATCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTGGAATCTTAGAATTTTAGAATCTTAGATTCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCTGAAGTTGTTTGTTAAATTTTTTTTACGATTTTCTTATTTTTTAATTTTCCAAGAATTATCATGGGAAGSAAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTTTGCAAAAAACTTCCTTCAAATGTCCATCTGTCACCCATCCCTCAGGATCCCCATGAATTCTTCGTTCCATTTTTTTTTCCGAAAAAATTTCTTGCTGACATTTTAACGACAACATCTCATCCGTCCCATTCACACCCCTTTGAATTCCCAAAAAATTCTGAAAGTCAATTTCCATTTTTAGAAAAAAAAATTCTGCAAACTTTTCGAACAGAGGAAATTAAAATGGATTTTTTTGGTTGACAAAAAAGTGTGGGCGAAAAAATATAAGCGAAATCTGATGACTTTTTGGAGTTGAGAGAAATAGAGAAGTGCGTCAGTAGCCAGTGGTGACGCAGAAAAATACTACAAACAGAGATATAGATTCTTTGTGATTTTAGTGTACAAAAATAGGTACTGAAATCGAATTTTGAAAACCTGGTTTTTGCGAATTTCAGATTTTGAGATTTTAAAAATGTGAGTTCTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCATAGAGACGAATTCAGATT</pcr_primer_p1>
		<pcr_primer_p2>GGACATTTGAAGGAAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>TTTCATAGAGACGAATTCAGATTATCAGGATCTTTTGGATCTTAGAATCTTAGAATCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTGGAATCTTAGAATTTTAGAATCTTAGATTCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCTGAAGTTGTTTGTTAAATTTTTTTTACGATTTTCTTATTTTTTAATTTTCCAAGAATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTTTGCAAAAAACTTCCTTCAAATGTCC</canonical_amplicon>
		<polymorphic_amplicon>TTTCATAGAGACGAATTCAGATTATCAGGATCTTTTGGATCTTAGAATCTTAGAATCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTGGAATCTTAGAATTTTAGAATCTTAGATTCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCTGAAGTTGTTTGTTAAATTTTTTTTACGATTTTCTTATTTTTTAATTTTCCAAGAATTATCATGGGAAGSAAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTTTGCAAAAAACTTCCTTCAAATGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27739</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>105480</contig_pos>
        <strand>+</strand>
        <context>CCATTTTTAG[C/T]AAAAAAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACACCCCTTTGAATTCCCAAAAAATTCTGAAAGTCAATTTCCATTTTTAG</left_flank>
        <right_flank>AAAAAAAATTCTGCAAACTTTTCGAACAGAGGAAATTAAAATGGATTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTGGAATCTTAGAATTTTAGAATCTTAGATTCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCTGAAGTTGTTTGTTAAATTTTTTTTACGATTTTCTTATTTTTTAATTTTCCAAGAATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTTTGCAAAAAACTTCCTTCAAATGTCCATCTGTCACCCATCCCTCAGGATCCCCATGAATTCTTCGTTCCATTTTTTTTTCCGAAAAAATTTCTTGCTGACATTTTAACGACAACATCTCATCCGTCCCATTCACACCCCTTTGAATTCCCAAAAAATTCTGAAAGTCAATTTCCATTTTTAGAAAAAAAAATTCTGCAAACTTTTCGAACAGAGGAAATTAAAATGGATTTTTTTGGTTGACAAAAAAGTGTGGGCGAAAAAATATAAGCGAAATCTGATGACTTTTTGGAGTTGAGAGAAATAGAGAAGTGCGTCAGTAGCCAGTGGTGACGCAGAAAAATACTACAAACAGAGATATAGATTCTTTGTGATTTTAGTGTACAAAAATAGGTACTGAAATCGAATTTTGAAAACCTGGTTTTTGCGAATTTCAGATTTTGAGATTTTAAAAATGTGAGTTCTAAAATTCCAAGATTCTTGAATTCTGGGATTCGGGGATTATAAGATTCTATGATGTTAAGGTCCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGA</canonical>
            <polymorphic>GAATCTCAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTGGAATCTTAGAATTTTAGAATCTTAGATTCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATCTTAGAATTTCAGAATCTTACTTTCCTGAAGTTGTTTGTTAAATTTTTTTTACGATTTTCTTATTTTTTAATTTTCCAAGAATTATCATGGGAAGAAAAAAAAGGATCTTCTTTTTTTTTCCAAGAATTTTGCAAAAAACTTCCTTCAAATGTCCATCTGTCACCCATCCCTCAGGATCCCCATGAATTCTTCGTTCCATTTTTTTTTCCGAAAAAATTTCTTGCTGACATTTTAACGACAACATCTCATCCGTCCCATTCACACCCCTTTGAATTCCCAAAAAATTCTGAAAGTCAATTTCCATTTTTAGYAAAAAAAATTCTGCAAACTTTTCGAACAGAGGAAATTAAAATGGATTTTTTTGGTTGACAAAAAAGTGTGGGCGAAAAAATATAAGCGAAATCTGATGACTTTTTGGAGTTGAGAGAAATAGAGAAGTGCGTCAGTAGCCAGTGGTGACGCAGAAAAATACTACAAACAGAGATATAGATTCTTTGTGATTTTAGTGTACAAAAATAGGTACTGAAATCGAATTTTGAAAACCTGGTTTTTGCGAATTTCAGATTTTGAGATTTTAAAAATGTGAGTTCTAAAATTCCAAGATTCTTGAATTCTGGGATTCGGGGATTATAAGATTCTATGATGTTAAGGTCCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATTTTAACGACAACATCTCAT</pcr_primer_p1>
		<pcr_primer_p2>TTGTAGTATTTTTCTGCGTCAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACATTTTAACGACAACATCTCATCCGTCCCATTCACACCCCTTTGAATTCCCAAAAAATTCTGAAAGTCAATTTCCATTTTTAGAAAAAAAAATTCTGCAAACTTTTCGAACAGAGGAAATTAAAATGGATTTTTTTGGTTGACAAAAAAGTGTGGGCGAAAAAATATAAGCGAAATCTGATGACTTTTTGGAGTTGAGAGAAATAGAGAAGTGCGTCAGTAGCCAGTGGTGACGCAGAAAAATACTACAA</canonical_amplicon>
		<polymorphic_amplicon>ACATTTTAACGACAACATCTCATCCGTCCCATTCACACCCCTTTGAATTCCCAAAAAATTCTGAAAGTCAATTTCCATTTTTAGYAAAAAAAATTCTGCAAACTTTTCGAACAGAGGAAATTAAAATGGATTTTTTTGGTTGACAAAAAAGTGTGGGCGAAAAAATATAAGCGAAATCTGATGACTTTTTGGAGTTGAGAGAAATAGAGAAGTGCGTCAGTAGCCAGTGGTGACGCAGAAAAATACTACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27740</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>148591</contig_pos>
        <strand>+</strand>
        <context>TTTAAAAAAA[A/T]TTACAGGCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAAGTTGACGGATAGAGTGGCCTTCAATTTAAGGAAGTATTTAAAAAAA</left_flank>
        <right_flank>TTACAGGCTCTAAAGTTCAAAATTACTAAAAAGTAGGATTTGCTGACAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACCGGAAGCGGAGAAATCTGAAAAAAAAGAACGATTAGTCATTCGATTTACTAAATATAATGTGATAAATTTACGATAAACAATTTCAAATTTTGAAAAAAAAAAAACCAAAAAAAAAATAGAATCATGGGATTCTGGAAGAATTGAGTCATAAAAAAGAACAATGAGAGCGAAAATATCGAAATTTGGGAATTTAGAAAATCAAAAAACAAGAGATGCAGTAATAAAAATTTTAGAAACTTCAGATACTTAGAATCTCAAAAGCACGAAAGATACCGTATTTCCTCTAATAAAAGCCGACTTCGCTAGCTTTGAGCACAATTATCTCGGTTCCTTTGAAAGATATCAAAAATGTGTCAACTGATAAAATATTTCTGATATTATGACACATTTTTTATTAGTTGACAAATTTTTAATATCTTTCACAGGAAATGAGATATATGAGCTCAAAGTTGACGGATAGAGTGGCCTTCAATTTAAGGAAGTATTTAAAAAAAGTTACAGGCTCTAAAGTTCAAAATTACTAAAAAGTAGGATTTGCTGACAGAACCTGAACATAATGCCAAATTTCACAAATCTTCGAAAAGAGAAAAGTTCCAGAAATCTACATAACGGATTCCAAAAACTTATTAAAACACCTTTTCTCCGTACACGTCCCGCCAAATTTGAATAAGTCAACAAAAGCTTGAAAGGAGAGGGATTAGCAAAGTGTCAAGTATATACCACTTTGACGGGAAAGGGGGAAACTGTAAAATAGAATAGAGCCGCGTTGTTATTTGTCATGCTCAACGGTAAATTAAGTGTGTACGCATGTTTCTGGTAAACATTGGAATGAGGGACAAGTAATGGATAATACCGGAAAGTATTGCGTAAATTTTTACTCGGAAAATGTTGGTATGTTTATCTGGATGTCCGCAATAAATCAAGGATAGAAATTGACATGATCCTTTGGGAAAAAAATAGTACCCGACGAAAATACCGTATCTCCTCTAACGGAA</canonical>
            <polymorphic>TCACCGGAAGCGGAGAAATCTGAAAAAAAAGAACGATTAGTCATTCGATTTACTAAATATAATGTGATAAATTTACGATAAACAATTTCAAATTTTGAAAAAAAAAAAACCAAAAAAAAAATAGAATCATGGGATTCTGGAAGAATTGAGTCATAAAAAAGAACAATGAGAGCGAAAATATCGAAATTTGGGAATTTAGAAAATCAAAAAACAAGAGATGCAGTAATAAAAATTTTAGAAACTTCAGATACTTAGAATCTCAAAAGCACGAAAGATACCGTATTTCCTCTAATAAAAGCCGACTTCGCTAGCTTTGAGCACAATTATCTCGGTTCCTTTGAAAGATATCAAAAATGTGTCAACTGATAAAATATTTCTGATATTATGACACATTTTTTATTAGTTGACAAATTTTTAATATCTTTCACAGGAAATGAGATATATGAGCTCAAAGTTGACGGATAGAGTGGCCTTCAATTTAAGGAAGTATTTAAAAAAAWTTACAGGCTCTAAAGTTCAAAATTACTAAAAAGTAGGATTTGCTGACAGAACCTGAACATAATGCCAAATTTCACAAATCTTCGAAAAGAGAAAAGTTCCAGAAATCTACATAACGGATTCCAAAAACTTATTAAAACACCTTTTCTCCGTACACGTCCCGCCAAATTTGAATAAGTCAACAAAAGCTTGAAAGGAGAGGGATTAGCAAAGTGTCAAGTATATACCACTTTGACGGGAAAGGGGGAAACTGTAAAATAGAATAGAGCCGCGTTGTTATTTGTCATGCTCAACGGTAAATTAAGTGTGTACGCATGTTTCTGGTAAACATTGGAATGAGGGACAAGTAATGGATAATACCGGAAAGTATTGCGTAAATTTTTACTCGGAAAATGTTGGTATGTTTATCTGGATGTCCGCAATAAATCAAGGATAGAAATTGACATGATCCTTTGGGAAAAAAATAGTACCCGACGAAAATACCGTATCTCCTCTAACGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCTCAAAAGCACGAAAGAT</pcr_primer_p1>
		<pcr_primer_p2>GGTTCTGTCAGCAAATCCTA</pcr_primer_p2>
		<pcr_amplicon_size>298</pcr_amplicon_size>
		<canonical_amplicon>AATCTCAAAAGCACGAAAGATACCGTATTTCCTCTAATAAAAGCCGACTTCGCTAGCTTTGAGCACAATTATCTCGGTTCCTTTGAAAGATATCAAAAATGTGTCAACTGATAAAATATTTCTGATATTATGACACATTTTTTATTAGTTGACAAATTTTTAATATCTTTCACAGGAAATGAGATATATGAGCTCAAAGTTGACGGATAGAGTGGCCTTCAATTTAAGGAAGTATTTAAAAAAAGTTACAGGCTCTAAAGTTCAAAATTACTAAAAAGTAGGATTTGCTGACAGAACC</canonical_amplicon>
		<polymorphic_amplicon>AATCTCAAAAGCACGAAAGATACCGTATTTCCTCTAATAAAAGCCGACTTCGCTAGCTTTGAGCACAATTATCTCGGTTCCTTTGAAAGATATCAAAAATGTGTCAACTGATAAAATATTTCTGATATTATGACACATTTTTTATTAGTTGACAAATTTTTAATATCTTTCACAGGAAATGAGATATATGAGCTCAAAGTTGACGGATAGAGTGGCCTTCAATTTAAGGAAGTATTTAAAAAAAWTTACAGGCTCTAAAGTTCAAAATTACTAAAAAGTAGGATTTGCTGACAGAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27741</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>149041</contig_pos>
        <strand>+</strand>
        <context>GACATGATCC[C/T]TTGGGAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTTTATCTGGATGTCCGCAATAAATCAAGGATAGAAATTGACATGATCC</left_flank>
        <right_flank>TTGGGAAAAAAATAGTACCCGACGAAAATACCGTATCTCCTCTAACGGAA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTTGACGGATAGAGTGGCCTTCAATTTAAGGAAGTATTTAAAAAAAGTTACAGGCTCTAAAGTTCAAAATTACTAAAAAGTAGGATTTGCTGACAGAACCTGAACATAATGCCAAATTTCACAAATCTTCGAAAAGAGAAAAGTTCCAGAAATCTACATAACGGATTCCAAAAACTTATTAAAACACCTTTTCTCCGTACACGTCCCGCCAAATTTGAATAAGTCAACAAAAGCTTGAAAGGAGAGGGATTAGCAAAGTGTCAAGTATATACCACTTTGACGGGAAAGGGGGAAACTGTAAAATAGAATAGAGCCGCGTTGTTATTTGTCATGCTCAACGGTAAATTAAGTGTGTACGCATGTTTCTGGTAAACATTGGAATGAGGGACAAGTAATGGATAATACCGGAAAGTATTGCGTAAATTTTTACTCGGAAAATGTTGGTATGTTTATCTGGATGTCCGCAATAAATCAAGGATAGAAATTGACATGATCCTTTGGGAAAAAAATAGTACCCGACGAAAATACCGTATCTCCTCTAACGGAAGAGCACCCAAGCGGTCATCTTTGAGCTTAATTATCTCGACTTCTGTGAAAGATACTAAAAAGTAGTCAACTAATAAAATATTTTTGTGATATGATTAACATTTCATCAGTTGACCGCTACTTCACATCTTTAAAATAAATCGAGATATAAGGGTATGTTTACGGTAAGTCATTTTTGACATTTTCAGTGGGAACTAGCCAAATTCAGATTCCTGAAAAATGAGTCTAGAATTTTTCGAGTTCTCTGAAATTATTAGAGTATACTAAACAAACATAGAGCTTCATTTTTCCAATTGACAACTTTTTGTAGCTTTTGTGGTTTTGGAGATATGCGCCTTTAAAGTTGGTGACGCTTACAAGCAGCAAGAGAGACAGGAGAGGAGGACTTCGTATTTTGGATACGCACATCTTGAAAACCAAAACAATTGCGAAAAAGTTGCCAATTACCAAA</canonical>
            <polymorphic>AAAGTTGACGGATAGAGTGGCCTTCAATTTAAGGAAGTATTTAAAAAAAGTTACAGGCTCTAAAGTTCAAAATTACTAAAAAGTAGGATTTGCTGACAGAACCTGAACATAATGCCAAATTTCACAAATCTTCGAAAAGAGAAAAGTTCCAGAAATCTACATAACGGATTCCAAAAACTTATTAAAACACCTTTTCTCCGTACACGTCCCGCCAAATTTGAATAAGTCAACAAAAGCTTGAAAGGAGAGGGATTAGCAAAGTGTCAAGTATATACCACTTTGACGGGAAAGGGGGAAACTGTAAAATAGAATAGAGCCGCGTTGTTATTTGTCATGCTCAACGGTAAATTAAGTGTGTACGCATGTTTCTGGTAAACATTGGAATGAGGGACAAGTAATGGATAATACCGGAAAGTATTGCGTAAATTTTTACTCGGAAAATGTTGGTATGTTTATCTGGATGTCCGCAATAAATCAAGGATAGAAATTGACATGATCCYTTGGGAAAAAAATAGTACCCGACGAAAATACCGTATCTCCTCTAACGGAAGAGCACCCAAGCGGTCATCTTTGAGCTTAATTATCTCGACTTCTGTGAAAGATACTAAAAAGTAGTCAACTAATAAAATATTTTTGTGATATGATTAACATTTCATCAGTTGACCGCTACTTCACATCTTTAAAATAAATCGAGATATAAGGGTATGTTTACGGTAAGTCATTTTTGACATTTTCAGTGGGAACTAGCCAAATTCAGATTCCTGAAAAATGAGTCTAGAATTTTTCGAGTTCTCTGAAATTATTAGAGTATACTAAACAAACATAGAGCTTCATTTTTCCAATTGACAACTTTTTGTAGCTTTTGTGGTTTTGGAGATATGCGCCTTTAAAGTTGGTGACGCTTACAAGCAGCAAGAGAGACAGGAGAGGAGGACTTCGTATTTTGGATACGCACATCTTGAAAACCAAAACAATTGCGAAAAAGTTGCCAATTACCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGGTATGTTTATCTGGATGTC</pcr_primer_p1>
		<pcr_primer_p2>GAAAATGTCAAAAATGACTTACC</pcr_primer_p2>
		<pcr_amplicon_size>293</pcr_amplicon_size>
		<canonical_amplicon>GTTGGTATGTTTATCTGGATGTCCGCAATAAATCAAGGATAGAAATTGACATGATCCTTTGGGAAAAAAATAGTACCCGACGAAAATACCGTATCTCCTCTAACGGAAGAGCACCCAAGCGGTCATCTTTGAGCTTAATTATCTCGACTTCTGTGAAAGATACTAAAAAGTAGTCAACTAATAAAATATTTTTGTGATATGATTAACATTTCATCAGTTGACCGCTACTTCACATCTTTAAAATAAATCGAGATATAAGGGTATGTTTACGGTAAGTCATTTTTGACATTTTC</canonical_amplicon>
		<polymorphic_amplicon>GTTGGTATGTTTATCTGGATGTCCGCAATAAATCAAGGATAGAAATTGACATGATCCYTTGGGAAAAAAATAGTACCCGACGAAAATACCGTATCTCCTCTAACGGAAGAGCACCCAAGCGGTCATCTTTGAGCTTAATTATCTCGACTTCTGTGAAAGATACTAAAAAGTAGTCAACTAATAAAATATTTTTGTGATATGATTAACATTTCATCAGTTGACCGCTACTTCACATCTTTAAAATAAATCGAGATATAAGGGTATGTTTACGGTAAGTCATTTTTGACATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27742</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>150442</contig_pos>
        <strand>+</strand>
        <context>CTCAAAATCC[A/C]GTTTTAGAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAGAGAAATAAAACATTCACTGAAAAAAACTGGAGGAATCTCAAAATCC</left_flank>
        <right_flank>GTTTTAGAACTTTCAAAATCTTGAAATTTCAGATTTTTGGAATATCTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGAAAACAGAGGAGATTGAATGATGGTAAGCGGATTTGCGGATGGAATGTGTACGGTTTCACACGTTTTCGAAACTTCCTCGATCTTGAAAGGATCACGAATCACTGAACATTCTGAATTCATATATCCGCAATTTCTTGTAGATTTAGCTAACATCATCATAACCTCCTACCTCTTCCGAATTCTCGATTCTAGAAAAAAGAAACGTTCGATATGACATTACTGTTGAAAGAGAGAGGGATTACGCAACAGGATTTCTACAGAGAAACCGAGAGAAAATGAGAAAAAAGCTACACTGATGATGCGCGAAAAATGGGGAAAAAGACAGAAAGATGACAGAAGATGAGAAAAAAGGATGGGACCACAATTACCCGCCGATGCCCAAGTTTTGTTTCTTTTTTGTCATGGATAGCAAGAGAAGATGGGGGAAATGAGAATTGAGAGGAGAAAGAGAAATAAAACATTCACTGAAAAAAACTGGAGGAATCTCAAAATCCCGTTTTAGAACTTTCAAAATCTTGAAATTTCAGATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATTTCAGAATTTTCAAAAGCTAATTTAACCACTGCAATCACGGGTCAACGATTTGAAATTTCCAAGAAAACCGGGTTTTTGTATTTTCCTCAAACGCATAATAGTTATGACCTTTATACTTTTTCACCTCAAAAAATTCCAAAACCATGAGGATGCATCTTTTTCAAAAATCTGGGTCAAAATATCCATTATCAAAATTAAGAACCGTCACCCAAAATAA</canonical>
            <polymorphic>AAGGAAAACAGAGGAGATTGAATGATGGTAAGCGGATTTGCGGATGGAATGTGTACGGTTTCACACGTTTTCGAAACTTCCTCGATCTTGAAAGGATCACGAATCACTGAACATTCTGAATTCATATATCCGCAATTTCTTGTAGATTTAGCTAACATCATCATAACCTCCTACCTCTTCCGAATTCTCGATTCTAGAAAAAAGAAACGTTCGATATGACATTACTGTTGAAAGAGAGAGGGATTACGCAACAGGATTTCTACAGAGAAACCGAGAGAAAATGAGAAAAAAGCTACACTGATGATGCGCGAAAAATGGGGAAAAAGACAGAAAGATGACAGAAGATGAGAAAAAAGGATGGGACCACAATTACCCGCCGATGCCCAAGTTTTGTTTCTTTTTTGTCATGGATAGCAAGAGAAGATGGGGGAAATGAGAATTGAGAGGAGAAAGAGAAATAAAACATTCACTGAAAAAAACTGGAGGAATCTCAAAATCCMGTTTTAGAACTTTCAAAATCTTGAAATTTCAGATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATTTCAGAATTTTCAAAAGCTAATTTAACCACTGCAATCACGGGTCAACGATTTGAAATTTCCAAGAAAACCGGGTTTTTGTATTTTCCTCAAACGCATAATAGTTATGACCTTTATACTTTTTCACCTCAAAAAATTCCAAAACCATGAGGATGCATCTTTTTCAAAAATCTGGGTCAAAATATCCATTATCAAAATTAAGAACCGTCACCCAAAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAAGACAGAAAGATGACAGA</pcr_primer_p1>
		<pcr_primer_p2>ACTGACATTCAGATATTCCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>GAAAAAGACAGAAAGATGACAGAAGATGAGAAAAAAGGATGGGACCACAATTACCCGCCGATGCCCAAGTTTTGTTTCTTTTTTGTCATGGATAGCAAGAGAAGATGGGGGAAATGAGAATTGAGAGGAGAAAGAGAAATAAAACATTCACTGAAAAAAACTGGAGGAATCTCAAAATCCCGTTTTAGAACTTTCAAAATCTTGAAATTTCAGATTTTTGGAATATCTGAATGTCAGT</canonical_amplicon>
		<polymorphic_amplicon>GAAAAAGACAGAAAGATGACAGAAGATGAGAAAAAAGGATGGGACCACAATTACCCGCCGATGCCCAAGTTTTGTTTCTTTTTTGTCATGGATAGCAAGAGAAGATGGGGGAAATGAGAATTGAGAGGAGAAAGAGAAATAAAACATTCACTGAAAAAAACTGGAGGAATCTCAAAATCCMGTTTTAGAACTTTCAAAATCTTGAAATTTCAGATTTTTGGAATATCTGAATGTCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27743</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>150567</contig_pos>
        <strand></strand>
        <context>ctcagaatct[C/T]agaatcgcag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCT</left_flank>
        <right_flank>AGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATCCGCAATTTCTTGTAGATTTAGCTAACATCATCATAACCTCCTACCTCTTCCGAATTCTCGATTCTAGAAAAAAGAAACGTTCGATATGACATTACTGTTGAAAGAGAGAGGGATTACGCAACAGGATTTCTACAGAGAAACCGAGAGAAAATGAGAAAAAAGCTACACTGATGATGCGCGAAAAATGGGGAAAAAGACAGAAAGATGACAGAAGATGAGAAAAAAGGATGGGACCACAATTACCCGCCGATGCCCAAGTTTTGTTTCTTTTTTGTCATGGATAGCAAGAGAAGATGGGGGAAATGAGAATTGAGAGGAGAAAGAGAAATAAAACATTCACTGAAAAAAACTGGAGGAATCTCAAAATCCCGTTTTAGAACTTTCAAAATCTTGAAATTTCAGATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATTTCAGAATTTTCAAAAGCTAATTTAACCACTGCAATCACGGGTCAACGATTTGAAATTTCCAAGAAAACCGGGTTTTTGTATTTTCCTCAAACGCATAATAGTTATGACCTTTATACTTTTTCACCTCAAAAAATTCCAAAACCATGAGGATGCATCTTTTTCAAAAATCTGGGTCAAAATATCCATTATCAAAATTAAGAACCGTCACCCAAAATAAATTTTTACTACCTCCTCCGCTTCTTTTTCTTCCCATTCTCCACTAAAAAAATGAAACTGGTGGGCTTTTGTAACCACTTTACGATCTCCTATCCCTCCTCCTCATTCCATTGTTTTCTTTTCCTC</canonical>
            <polymorphic>ATATCCGCAATTTCTTGTAGATTTAGCTAACATCATCATAACCTCCTACCTCTTCCGAATTCTCGATTCTAGAAAAAAGAAACGTTCGATATGACATTACTGTTGAAAGAGAGAGGGATTACGCAACAGGATTTCTACAGAGAAACCGAGAGAAAATGAGAAAAAAGCTACACTGATGATGCGCGAAAAATGGGGAAAAAGACAGAAAGATGACAGAAGATGAGAAAAAAGGATGGGACCACAATTACCCGCCGATGCCCAAGTTTTGTTTCTTTTTTGTCATGGATAGCAAGAGAAGATGGGGGAAATGAGAATTGAGAGGAGAAAGAGAAATAAAACATTCACTGAAAAAAACTGGAGGAATCTCAAAATCCCGTTTTAGAACTTTCAAAATCTTGAAATTTCAGATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTYAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATTTCAGAATTTTCAAAAGCTAATTTAACCACTGCAATCACGGGTCAACGATTTGAAATTTCCAAGAAAACCGGGTTTTTGTATTTTCCTCAAACGCATAATAGTTATGACCTTTATACTTTTTCACCTCAAAAAATTCCAAAACCATGAGGATGCATCTTTTTCAAAAATCTGGGTCAAAATATCCATTATCAAAATTAAGAACCGTCACCCAAAATAAATTTTTACTACCTCCTCCGCTTCTTTTTCTTCCCATTCTCCACTAAAAAAATGAAACTGGTGGGCTTTTGTAACCACTTTACGATCTCCTATCCCTCCTCCTCATTCCATTGTTTTCTTTTCCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>350 339 63 56 54 26 18 16 16 16 16 8 8 8 6</canonical_bands>
                <polymorphic_bands>350 339 63 56 54 26 24 18 16 16 16 8 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTTTGGAATATCTGAATGTC</pcr_primer_p1>
		<pcr_primer_p2>AATTCTGATTTTTCGAGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATT</canonical_amplicon>
		<polymorphic_amplicon>GATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTYAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27744</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>150588</contig_pos>
        <strand></strand>
        <context>aatctcagaa[T/A]ctcaraatct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAA</left_flank>
        <right_flank>CTCAAAATCTCAGAATCTGAAACTCTCAAAATCACAGAATCTCAGAATCT</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAGCTAACATCATCATAACCTCCTACCTCTTCCGAATTCTCGATTCTAGAAAAAAGAAACGTTCGATATGACATTACTGTTGAAAGAGAGAGGGATTACGCAACAGGATTTCTACAGAGAAACCGAGAGAAAATGAGAAAAAAGCTACACTGATGATGCGCGAAAAATGGGGAAAAAGACAGAAAGATGACAGAAGATGAGAAAAAAGGATGGGACCACAATTACCCGCCGATGCCCAAGTTTTGTTTCTTTTTTGTCATGGATAGCAAGAGAAGATGGGGGAAATGAGAATTGAGAGGAGAAAGAGAAATAAAACATTCACTGAAAAAAACTGGAGGAATCTCAAAATCCCGTTTTAGAACTTTCAAAATCTTGAAATTTCAGATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATTTCAGAATTTTCAAAAGCTAATTTAACCACTGCAATCACGGGTCAACGATTTGAAATTTCCAAGAAAACCGGGTTTTTGTATTTTCCTCAAACGCATAATAGTTATGACCTTTATACTTTTTCACCTCAAAAAATTCCAAAACCATGAGGATGCATCTTTTTCAAAAATCTGGGTCAAAATATCCATTATCAAAATTAAGAACCGTCACCCAAAATAAATTTTTACTACCTCCTCCGCTTCTTTTTCTTCCCATTCTCCACTAAAAAAATGAAACTGGTGGGCTTTTGTAACCACTTTACGATCTCCTATCCCTCCTCCTCATTCCATTGTTTTCTTTTCCTCATTTTCCAAAGAACTACTGTA</canonical>
            <polymorphic>TTTAGCTAACATCATCATAACCTCCTACCTCTTCCGAATTCTCGATTCTAGAAAAAAGAAACGTTCGATATGACATTACTGTTGAAAGAGAGAGGGATTACGCAACAGGATTTCTACAGAGAAACCGAGAGAAAATGAGAAAAAAGCTACACTGATGATGCGCGAAAAATGGGGAAAAAGACAGAAAGATGACAGAAGATGAGAAAAAAGGATGGGACCACAATTACCCGCCGATGCCCAAGTTTTGTTTCTTTTTTGTCATGGATAGCAAGAGAAGATGGGGGAAATGAGAATTGAGAGGAGAAAGAGAAATAAAACATTCACTGAAAAAAACTGGAGGAATCTCAAAATCCCGTTTTAGAACTTTCAAAATCTTGAAATTTCAGATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAAWCTCAAAATCTCAGAATCTGAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATTTCAGAATTTTCAAAAGCTAATTTAACCACTGCAATCACGGGTCAACGATTTGAAATTTCCAAGAAAACCGGGTTTTTGTATTTTCCTCAAACGCATAATAGTTATGACCTTTATACTTTTTCACCTCAAAAAATTCCAAAACCATGAGGATGCATCTTTTTCAAAAATCTGGGTCAAAATATCCATTATCAAAATTAAGAACCGTCACCCAAAATAAATTTTTACTACCTCCTCCGCTTCTTTTTCTTCCCATTCTCCACTAAAAAAATGAAACTGGTGGGCTTTTGTAACCACTTTACGATCTCCTATCCCTCCTCCTCATTCCATTGTTTTCTTTTCCTCATTTTCCAAAGAACTACTGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>439 296 85 44 32 24 16 16 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>439 296 85 44 32 24 24 16 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>439 296 85 44 32 24 16 16 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>439 296 85 44 32 24 24 16 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTTTGGAATATCTGAATGTC</pcr_primer_p1>
		<pcr_primer_p2>AATTCTGATTTTTCGAGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATT</canonical_amplicon>
		<polymorphic_amplicon>GATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAAWCTCAAAATCTCAGAATCTGAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27745</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>150593</contig_pos>
        <strand></strand>
        <context>cagaawctca[A/G]aatctcagaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCA</left_flank>
        <right_flank>AATCTCAGAATCTGAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAACATCATCATAACCTCCTACCTCTTCCGAATTCTCGATTCTAGAAAAAAGAAACGTTCGATATGACATTACTGTTGAAAGAGAGAGGGATTACGCAACAGGATTTCTACAGAGAAACCGAGAGAAAATGAGAAAAAAGCTACACTGATGATGCGCGAAAAATGGGGAAAAAGACAGAAAGATGACAGAAGATGAGAAAAAAGGATGGGACCACAATTACCCGCCGATGCCCAAGTTTTGTTTCTTTTTTGTCATGGATAGCAAGAGAAGATGGGGGAAATGAGAATTGAGAGGAGAAAGAGAAATAAAACATTCACTGAAAAAAACTGGAGGAATCTCAAAATCCCGTTTTAGAACTTTCAAAATCTTGAAATTTCAGATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATTTCAGAATTTTCAAAAGCTAATTTAACCACTGCAATCACGGGTCAACGATTTGAAATTTCCAAGAAAACCGGGTTTTTGTATTTTCCTCAAACGCATAATAGTTATGACCTTTATACTTTTTCACCTCAAAAAATTCCAAAACCATGAGGATGCATCTTTTTCAAAAATCTGGGTCAAAATATCCATTATCAAAATTAAGAACCGTCACCCAAAATAAATTTTTACTACCTCCTCCGCTTCTTTTTCTTCCCATTCTCCACTAAAAAAATGAAACTGGTGGGCTTTTGTAACCACTTTACGATCTCCTATCCCTCCTCCTCATTCCATTGTTTTCTTTTCCTCATTTTCCAAAGAACTACTGTACAAGA</canonical>
            <polymorphic>CTAACATCATCATAACCTCCTACCTCTTCCGAATTCTCGATTCTAGAAAAAAGAAACGTTCGATATGACATTACTGTTGAAAGAGAGAGGGATTACGCAACAGGATTTCTACAGAGAAACCGAGAGAAAATGAGAAAAAAGCTACACTGATGATGCGCGAAAAATGGGGAAAAAGACAGAAAGATGACAGAAGATGAGAAAAAAGGATGGGACCACAATTACCCGCCGATGCCCAAGTTTTGTTTCTTTTTTGTCATGGATAGCAAGAGAAGATGGGGGAAATGAGAATTGAGAGGAGAAAGAGAAATAAAACATTCACTGAAAAAAACTGGAGGAATCTCAAAATCCCGTTTTAGAACTTTCAAAATCTTGAAATTTCAGATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCARAATCTCAGAATCTGAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATTTCAGAATTTTCAAAAGCTAATTTAACCACTGCAATCACGGGTCAACGATTTGAAATTTCCAAGAAAACCGGGTTTTTGTATTTTCCTCAAACGCATAATAGTTATGACCTTTATACTTTTTCACCTCAAAAAATTCCAAAACCATGAGGATGCATCTTTTTCAAAAATCTGGGTCAAAATATCCATTATCAAAATTAAGAACCGTCACCCAAAATAAATTTTTACTACCTCCTCCGCTTCTTTTTCTTCCCATTCTCCACTAAAAAAATGAAACTGGTGGGCTTTTGTAACCACTTTACGATCTCCTATCCCTCCTCCTCATTCCATTGTTTTCTTTTCCTCATTTTCCAAAGAACTACTGTACAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTTGGAATATCTGAATGTC</pcr_primer_p1>
		<pcr_primer_p2>AATTCTGATTTTTCGAGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATT</canonical_amplicon>
		<polymorphic_amplicon>GATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCARAATCTCAGAATCTGAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27746</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>150607</contig_pos>
        <strand></strand>
        <context>ctcagaatct[G/C]aractctcar</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCT</left_flank>
        <right_flank>AAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTCCTACCTCTTCCGAATTCTCGATTCTAGAAAAAAGAAACGTTCGATATGACATTACTGTTGAAAGAGAGAGGGATTACGCAACAGGATTTCTACAGAGAAACCGAGAGAAAATGAGAAAAAAGCTACACTGATGATGCGCGAAAAATGGGGAAAAAGACAGAAAGATGACAGAAGATGAGAAAAAAGGATGGGACCACAATTACCCGCCGATGCCCAAGTTTTGTTTCTTTTTTGTCATGGATAGCAAGAGAAGATGGGGGAAATGAGAATTGAGAGGAGAAAGAGAAATAAAACATTCACTGAAAAAAACTGGAGGAATCTCAAAATCCCGTTTTAGAACTTTCAAAATCTTGAAATTTCAGATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATTTCAGAATTTTCAAAAGCTAATTTAACCACTGCAATCACGGGTCAACGATTTGAAATTTCCAAGAAAACCGGGTTTTTGTATTTTCCTCAAACGCATAATAGTTATGACCTTTATACTTTTTCACCTCAAAAAATTCCAAAACCATGAGGATGCATCTTTTTCAAAAATCTGGGTCAAAATATCCATTATCAAAATTAAGAACCGTCACCCAAAATAAATTTTTACTACCTCCTCCGCTTCTTTTTCTTCCCATTCTCCACTAAAAAAATGAAACTGGTGGGCTTTTGTAACCACTTTACGATCTCCTATCCCTCCTCCTCATTCCATTGTTTTCTTTTCCTCATTTTCCAAAGAACTACTGTACAAGAAAAAAAAGCTATTG</canonical>
            <polymorphic>ACCTCCTACCTCTTCCGAATTCTCGATTCTAGAAAAAAGAAACGTTCGATATGACATTACTGTTGAAAGAGAGAGGGATTACGCAACAGGATTTCTACAGAGAAACCGAGAGAAAATGAGAAAAAAGCTACACTGATGATGCGCGAAAAATGGGGAAAAAGACAGAAAGATGACAGAAGATGAGAAAAAAGGATGGGACCACAATTACCCGCCGATGCCCAAGTTTTGTTTCTTTTTTGTCATGGATAGCAAGAGAAGATGGGGGAAATGAGAATTGAGAGGAGAAAGAGAAATAAAACATTCACTGAAAAAAACTGGAGGAATCTCAAAATCCCGTTTTAGAACTTTCAAAATCTTGAAATTTCAGATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTSAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATTTCAGAATTTTCAAAAGCTAATTTAACCACTGCAATCACGGGTCAACGATTTGAAATTTCCAAGAAAACCGGGTTTTTGTATTTTCCTCAAACGCATAATAGTTATGACCTTTATACTTTTTCACCTCAAAAAATTCCAAAACCATGAGGATGCATCTTTTTCAAAAATCTGGGTCAAAATATCCATTATCAAAATTAAGAACCGTCACCCAAAATAAATTTTTACTACCTCCTCCGCTTCTTTTTCTTCCCATTCTCCACTAAAAAAATGAAACTGGTGGGCTTTTGTAACCACTTTACGATCTCCTATCCCTCCTCCTCATTCCATTGTTTTCTTTTCCTCATTTTCCAAAGAACTACTGTACAAGAAAAAAAAGCTATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAGNNNCTG</site>
                <isoschizomers>
                    <enzyme>AlwNI</enzyme>
                    <enzyme>CaiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>379 350 63 54 26 18 16 16 16 16 16 8 8 8 6</canonical_bands>
                <polymorphic_bands>379 350 63 54 32 18 16 16 16 16 16 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTTTGGAATATCTGAATGTC</pcr_primer_p1>
		<pcr_primer_p2>AATTCTGATTTTTCGAGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATT</canonical_amplicon>
		<polymorphic_amplicon>GATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTSAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27747</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>150609</contig_pos>
        <strand></strand>
        <context>cagaatctsa[A/G]actctcaraa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGA</left_flank>
        <right_flank>ACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCTACCTCTTCCGAATTCTCGATTCTAGAAAAAAGAAACGTTCGATATGACATTACTGTTGAAAGAGAGAGGGATTACGCAACAGGATTTCTACAGAGAAACCGAGAGAAAATGAGAAAAAAGCTACACTGATGATGCGCGAAAAATGGGGAAAAAGACAGAAAGATGACAGAAGATGAGAAAAAAGGATGGGACCACAATTACCCGCCGATGCCCAAGTTTTGTTTCTTTTTTGTCATGGATAGCAAGAGAAGATGGGGGAAATGAGAATTGAGAGGAGAAAGAGAAATAAAACATTCACTGAAAAAAACTGGAGGAATCTCAAAATCCCGTTTTAGAACTTTCAAAATCTTGAAATTTCAGATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATTTCAGAATTTTCAAAAGCTAATTTAACCACTGCAATCACGGGTCAACGATTTGAAATTTCCAAGAAAACCGGGTTTTTGTATTTTCCTCAAACGCATAATAGTTATGACCTTTATACTTTTTCACCTCAAAAAATTCCAAAACCATGAGGATGCATCTTTTTCAAAAATCTGGGTCAAAATATCCATTATCAAAATTAAGAACCGTCACCCAAAATAAATTTTTACTACCTCCTCCGCTTCTTTTTCTTCCCATTCTCCACTAAAAAAATGAAACTGGTGGGCTTTTGTAACCACTTTACGATCTCCTATCCCTCCTCCTCATTCCATTGTTTTCTTTTCCTCATTTTCCAAAGAACTACTGTACAAGAAAAAAAAGCTATTGCG</canonical>
            <polymorphic>CTCCTACCTCTTCCGAATTCTCGATTCTAGAAAAAAGAAACGTTCGATATGACATTACTGTTGAAAGAGAGAGGGATTACGCAACAGGATTTCTACAGAGAAACCGAGAGAAAATGAGAAAAAAGCTACACTGATGATGCGCGAAAAATGGGGAAAAAGACAGAAAGATGACAGAAGATGAGAAAAAAGGATGGGACCACAATTACCCGCCGATGCCCAAGTTTTGTTTCTTTTTTGTCATGGATAGCAAGAGAAGATGGGGGAAATGAGAATTGAGAGGAGAAAGAGAAATAAAACATTCACTGAAAAAAACTGGAGGAATCTCAAAATCCCGTTTTAGAACTTTCAAAATCTTGAAATTTCAGATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGARACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATTTCAGAATTTTCAAAAGCTAATTTAACCACTGCAATCACGGGTCAACGATTTGAAATTTCCAAGAAAACCGGGTTTTTGTATTTTCCTCAAACGCATAATAGTTATGACCTTTATACTTTTTCACCTCAAAAAATTCCAAAACCATGAGGATGCATCTTTTTCAAAAATCTGGGTCAAAATATCCATTATCAAAATTAAGAACCGTCACCCAAAATAAATTTTTACTACCTCCTCCGCTTCTTTTTCTTCCCATTCTCCACTAAAAAAATGAAACTGGTGGGCTTTTGTAACCACTTTACGATCTCCTATCCCTCCTCCTCATTCCATTGTTTTCTTTTCCTCATTTTCCAAAGAACTACTGTACAAGAAAAAAAAGCTATTGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTTGGAATATCTGAATGTC</pcr_primer_p1>
		<pcr_primer_p2>AATTCTGATTTTTCGAGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATT</canonical_amplicon>
		<polymorphic_amplicon>GATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGARACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27748</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>150617</contig_pos>
        <strand></strand>
        <context>saractctca[A/G]aatcwcakaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCA</left_flank>
        <right_flank>AATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCCGAATTCTCGATTCTAGAAAAAAGAAACGTTCGATATGACATTACTGTTGAAAGAGAGAGGGATTACGCAACAGGATTTCTACAGAGAAACCGAGAGAAAATGAGAAAAAAGCTACACTGATGATGCGCGAAAAATGGGGAAAAAGACAGAAAGATGACAGAAGATGAGAAAAAAGGATGGGACCACAATTACCCGCCGATGCCCAAGTTTTGTTTCTTTTTTGTCATGGATAGCAAGAGAAGATGGGGGAAATGAGAATTGAGAGGAGAAAGAGAAATAAAACATTCACTGAAAAAAACTGGAGGAATCTCAAAATCCCGTTTTAGAACTTTCAAAATCTTGAAATTTCAGATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATTTCAGAATTTTCAAAAGCTAATTTAACCACTGCAATCACGGGTCAACGATTTGAAATTTCCAAGAAAACCGGGTTTTTGTATTTTCCTCAAACGCATAATAGTTATGACCTTTATACTTTTTCACCTCAAAAAATTCCAAAACCATGAGGATGCATCTTTTTCAAAAATCTGGGTCAAAATATCCATTATCAAAATTAAGAACCGTCACCCAAAATAAATTTTTACTACCTCCTCCGCTTCTTTTTCTTCCCATTCTCCACTAAAAAAATGAAACTGGTGGGCTTTTGTAACCACTTTACGATCTCCTATCCCTCCTCCTCATTCCATTGTTTTCTTTTCCTCATTTTCCAAAGAACTACTGTACAAGAAAAAAAAGCTATTGCGAAATTAAT</canonical>
            <polymorphic>TCTTCCGAATTCTCGATTCTAGAAAAAAGAAACGTTCGATATGACATTACTGTTGAAAGAGAGAGGGATTACGCAACAGGATTTCTACAGAGAAACCGAGAGAAAATGAGAAAAAAGCTACACTGATGATGCGCGAAAAATGGGGAAAAAGACAGAAAGATGACAGAAGATGAGAAAAAAGGATGGGACCACAATTACCCGCCGATGCCCAAGTTTTGTTTCTTTTTTGTCATGGATAGCAAGAGAAGATGGGGGAAATGAGAATTGAGAGGAGAAAGAGAAATAAAACATTCACTGAAAAAAACTGGAGGAATCTCAAAATCCCGTTTTAGAACTTTCAAAATCTTGAAATTTCAGATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCARAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATTTCAGAATTTTCAAAAGCTAATTTAACCACTGCAATCACGGGTCAACGATTTGAAATTTCCAAGAAAACCGGGTTTTTGTATTTTCCTCAAACGCATAATAGTTATGACCTTTATACTTTTTCACCTCAAAAAATTCCAAAACCATGAGGATGCATCTTTTTCAAAAATCTGGGTCAAAATATCCATTATCAAAATTAAGAACCGTCACCCAAAATAAATTTTTACTACCTCCTCCGCTTCTTTTTCTTCCCATTCTCCACTAAAAAAATGAAACTGGTGGGCTTTTGTAACCACTTTACGATCTCCTATCCCTCCTCCTCATTCCATTGTTTTCTTTTCCTCATTTTCCAAAGAACTACTGTACAAGAAAAAAAAGCTATTGCGAAATTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTTGGAATATCTGAATGTC</pcr_primer_p1>
		<pcr_primer_p2>AATTCTGATTTTTCGAGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATT</canonical_amplicon>
		<polymorphic_amplicon>GATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCARAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27749</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>150622</contig_pos>
        <strand></strand>
        <context>tctcaraatc[A/T]cakaatctca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAAAATC</left_flank>
        <right_flank>CAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAATTCTCGATTCTAGAAAAAAGAAACGTTCGATATGACATTACTGTTGAAAGAGAGAGGGATTACGCAACAGGATTTCTACAGAGAAACCGAGAGAAAATGAGAAAAAAGCTACACTGATGATGCGCGAAAAATGGGGAAAAAGACAGAAAGATGACAGAAGATGAGAAAAAAGGATGGGACCACAATTACCCGCCGATGCCCAAGTTTTGTTTCTTTTTTGTCATGGATAGCAAGAGAAGATGGGGGAAATGAGAATTGAGAGGAGAAAGAGAAATAAAACATTCACTGAAAAAAACTGGAGGAATCTCAAAATCCCGTTTTAGAACTTTCAAAATCTTGAAATTTCAGATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATTTCAGAATTTTCAAAAGCTAATTTAACCACTGCAATCACGGGTCAACGATTTGAAATTTCCAAGAAAACCGGGTTTTTGTATTTTCCTCAAACGCATAATAGTTATGACCTTTATACTTTTTCACCTCAAAAAATTCCAAAACCATGAGGATGCATCTTTTTCAAAAATCTGGGTCAAAATATCCATTATCAAAATTAAGAACCGTCACCCAAAATAAATTTTTACTACCTCCTCCGCTTCTTTTTCTTCCCATTCTCCACTAAAAAAATGAAACTGGTGGGCTTTTGTAACCACTTTACGATCTCCTATCCCTCCTCCTCATTCCATTGTTTTCTTTTCCTCATTTTCCAAAGAACTACTGTACAAGAAAAAAAAGCTATTGCGAAATTAATCATTT</canonical>
            <polymorphic>CGAATTCTCGATTCTAGAAAAAAGAAACGTTCGATATGACATTACTGTTGAAAGAGAGAGGGATTACGCAACAGGATTTCTACAGAGAAACCGAGAGAAAATGAGAAAAAAGCTACACTGATGATGCGCGAAAAATGGGGAAAAAGACAGAAAGATGACAGAAGATGAGAAAAAAGGATGGGACCACAATTACCCGCCGATGCCCAAGTTTTGTTTCTTTTTTGTCATGGATAGCAAGAGAAGATGGGGGAAATGAGAATTGAGAGGAGAAAGAGAAATAAAACATTCACTGAAAAAAACTGGAGGAATCTCAAAATCCCGTTTTAGAACTTTCAAAATCTTGAAATTTCAGATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAAAATCWCAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATTTCAGAATTTTCAAAAGCTAATTTAACCACTGCAATCACGGGTCAACGATTTGAAATTTCCAAGAAAACCGGGTTTTTGTATTTTCCTCAAACGCATAATAGTTATGACCTTTATACTTTTTCACCTCAAAAAATTCCAAAACCATGAGGATGCATCTTTTTCAAAAATCTGGGTCAAAATATCCATTATCAAAATTAAGAACCGTCACCCAAAATAAATTTTTACTACCTCCTCCGCTTCTTTTTCTTCCCATTCTCCACTAAAAAAATGAAACTGGTGGGCTTTTGTAACCACTTTACGATCTCCTATCCCTCCTCCTCATTCCATTGTTTTCTTTTCCTCATTTTCCAAAGAACTACTGTACAAGAAAAAAAAGCTATTGCGAAATTAATCATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>211 117 104 103 86 84 69 65 52 41 20 17 14 9 8</canonical_bands>
                <polymorphic_bands>252 117 104 103 86 84 69 65 52 20 17 14 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTTTGGAATATCTGAATGTC</pcr_primer_p1>
		<pcr_primer_p2>AATTCTGATTTTTCGAGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATT</canonical_amplicon>
		<polymorphic_amplicon>GATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAAAATCWCAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27750</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>150625</contig_pos>
        <strand></strand>
        <context>caraatcwca[G/T]aatctcagaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAAAATCACA</left_flank>
        <right_flank>AATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCTCGATTCTAGAAAAAAGAAACGTTCGATATGACATTACTGTTGAAAGAGAGAGGGATTACGCAACAGGATTTCTACAGAGAAACCGAGAGAAAATGAGAAAAAAGCTACACTGATGATGCGCGAAAAATGGGGAAAAAGACAGAAAGATGACAGAAGATGAGAAAAAAGGATGGGACCACAATTACCCGCCGATGCCCAAGTTTTGTTTCTTTTTTGTCATGGATAGCAAGAGAAGATGGGGGAAATGAGAATTGAGAGGAGAAAGAGAAATAAAACATTCACTGAAAAAAACTGGAGGAATCTCAAAATCCCGTTTTAGAACTTTCAAAATCTTGAAATTTCAGATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATTTCAGAATTTTCAAAAGCTAATTTAACCACTGCAATCACGGGTCAACGATTTGAAATTTCCAAGAAAACCGGGTTTTTGTATTTTCCTCAAACGCATAATAGTTATGACCTTTATACTTTTTCACCTCAAAAAATTCCAAAACCATGAGGATGCATCTTTTTCAAAAATCTGGGTCAAAATATCCATTATCAAAATTAAGAACCGTCACCCAAAATAAATTTTTACTACCTCCTCCGCTTCTTTTTCTTCCCATTCTCCACTAAAAAAATGAAACTGGTGGGCTTTTGTAACCACTTTACGATCTCCTATCCCTCCTCCTCATTCCATTGTTTTCTTTTCCTCATTTTCCAAAGAACTACTGTACAAGAAAAAAAAGCTATTGCGAAATTAATCATTTTTC</canonical>
            <polymorphic>ATTCTCGATTCTAGAAAAAAGAAACGTTCGATATGACATTACTGTTGAAAGAGAGAGGGATTACGCAACAGGATTTCTACAGAGAAACCGAGAGAAAATGAGAAAAAAGCTACACTGATGATGCGCGAAAAATGGGGAAAAAGACAGAAAGATGACAGAAGATGAGAAAAAAGGATGGGACCACAATTACCCGCCGATGCCCAAGTTTTGTTTCTTTTTTGTCATGGATAGCAAGAGAAGATGGGGGAAATGAGAATTGAGAGGAGAAAGAGAAATAAAACATTCACTGAAAAAAACTGGAGGAATCTCAAAATCCCGTTTTAGAACTTTCAAAATCTTGAAATTTCAGATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAAAATCACAKAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATTTCAGAATTTTCAAAAGCTAATTTAACCACTGCAATCACGGGTCAACGATTTGAAATTTCCAAGAAAACCGGGTTTTTGTATTTTCCTCAAACGCATAATAGTTATGACCTTTATACTTTTTCACCTCAAAAAATTCCAAAACCATGAGGATGCATCTTTTTCAAAAATCTGGGTCAAAATATCCATTATCAAAATTAAGAACCGTCACCCAAAATAAATTTTTACTACCTCCTCCGCTTCTTTTTCTTCCCATTCTCCACTAAAAAAATGAAACTGGTGGGCTTTTGTAACCACTTTACGATCTCCTATCCCTCCTCCTCATTCCATTGTTTTCTTTTCCTCATTTTCCAAAGAACTACTGTACAAGAAAAAAAAGCTATTGCGAAATTAATCATTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>476 296 85 32 24 16 16 8 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>476 296 85 32 32 16 16 8 8 8 8 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>476 296 85 32 24 16 16 8 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>476 296 85 32 32 16 16 8 8 8 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTTTGGAATATCTGAATGTC</pcr_primer_p1>
		<pcr_primer_p2>AATTCTGATTTTTCGAGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATT</canonical_amplicon>
		<polymorphic_amplicon>GATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAAAATCACAKAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27751</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>150657</contig_pos>
        <strand>+</strand>
        <context>CAGAATCTCA[A/G]AATGTGGCGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCA</left_flank>
        <right_flank>AATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGACATTACTGTTGAAAGAGAGAGGGATTACGCAACAGGATTTCTACAGAGAAACCGAGAGAAAATGAGAAAAAAGCTACACTGATGATGCGCGAAAAATGGGGAAAAAGACAGAAAGATGACAGAAGATGAGAAAAAAGGATGGGACCACAATTACCCGCCGATGCCCAAGTTTTGTTTCTTTTTTGTCATGGATAGCAAGAGAAGATGGGGGAAATGAGAATTGAGAGGAGAAAGAGAAATAAAACATTCACTGAAAAAAACTGGAGGAATCTCAAAATCCCGTTTTAGAACTTTCAAAATCTTGAAATTTCAGATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATTTCAGAATTTTCAAAAGCTAATTTAACCACTGCAATCACGGGTCAACGATTTGAAATTTCCAAGAAAACCGGGTTTTTGTATTTTCCTCAAACGCATAATAGTTATGACCTTTATACTTTTTCACCTCAAAAAATTCCAAAACCATGAGGATGCATCTTTTTCAAAAATCTGGGTCAAAATATCCATTATCAAAATTAAGAACCGTCACCCAAAATAAATTTTTACTACCTCCTCCGCTTCTTTTTCTTCCCATTCTCCACTAAAAAAATGAAACTGGTGGGCTTTTGTAACCACTTTACGATCTCCTATCCCTCCTCCTCATTCCATTGTTTTCTTTTCCTCATTTTCCAAAGAACTACTGTACAAGAAAAAAAAGCTATTGCGAAATTAATCATTTTTCCTCAAAAAAAAGTTGAAAAAAAGCCAAAAAAA</canonical>
            <polymorphic>ATGACATTACTGTTGAAAGAGAGAGGGATTACGCAACAGGATTTCTACAGAGAAACCGAGAGAAAATGAGAAAAAAGCTACACTGATGATGCGCGAAAAATGGGGAAAAAGACAGAAAGATGACAGAAGATGAGAAAAAAGGATGGGACCACAATTACCCGCCGATGCCCAAGTTTTGTTTCTTTTTTGTCATGGATAGCAAGAGAAGATGGGGGAAATGAGAATTGAGAGGAGAAAGAGAAATAAAACATTCACTGAAAAAAACTGGAGGAATCTCAAAATCCCGTTTTAGAACTTTCAAAATCTTGAAATTTCAGATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCARAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATTTCAGAATTTTCAAAAGCTAATTTAACCACTGCAATCACGGGTCAACGATTTGAAATTTCCAAGAAAACCGGGTTTTTGTATTTTCCTCAAACGCATAATAGTTATGACCTTTATACTTTTTCACCTCAAAAAATTCCAAAACCATGAGGATGCATCTTTTTCAAAAATCTGGGTCAAAATATCCATTATCAAAATTAAGAACCGTCACCCAAAATAAATTTTTACTACCTCCTCCGCTTCTTTTTCTTCCCATTCTCCACTAAAAAAATGAAACTGGTGGGCTTTTGTAACCACTTTACGATCTCCTATCCCTCCTCCTCATTCCATTGTTTTCTTTTCCTCATTTTCCAAAGAACTACTGTACAAGAAAAAAAAGCTATTGCGAAATTAATCATTTTTCCTCAAAAAAAAGTTGAAAAAAAGCCAAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTTGGAATATCTGAATGTC</pcr_primer_p1>
		<pcr_primer_p2>AATTCTGATTTTTCGAGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCAAAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATT</canonical_amplicon>
		<polymorphic_amplicon>GATTTTTGGAATATCTGAATGTCAGTTAATTTTTTTTTGGAATCCTGGAATCCTGGAATCTTTGAATTACCCTCTTTCAGAAACTCAGAATCTCAGAATCGCAGAATCTCAGAATCTCAAAATCTCAGAATCTGAAACTCTCAAAATCACAGAATCTCAGAATCTCAAAATTTCAGAATCTCARAATGTGGCGTCGTGAAAATTGAAAATTTTCACGAGAAACTCTTCTGAAAAACTCGAAAAATCAGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27752</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>174183</contig_pos>
        <strand>+</strand>
        <context>CGTTTTCAGA[A/G]TTCATGTGCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGTAAGATATTCTGTTGACGAGTTTGCCAGCTTATTTCTCGTTTTCAGA</left_flank>
        <right_flank>TTCATGTGCGACGAGTCAGGTGACCATCTTGTCGTTCCATTGAGATTCAA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGTTCACTCAGCTGTCCTCACTTCCGAAGGACAAGTCTTCATGTGCGGTATCAACGAGAAGGGCACCGTTCCAGCGGAAGGAGTTGAAATGGAGGGAAGTACCGACGAATTCACAAAGGTCCCATTCTCAGACGAGATTCAAGAGGAGGGAAAAATCATCATGTTGGCTGCTGGCGCCTCTTTCACCGCCGGACTGACTGATCAAGGATCCGTGATCGCTTGGGGAAATCTTCGCAATTCCAACGGAAACGTCGATGTTCATCCACTTCTCCACAAGATGCAGGAGAAGCCTGTCGTCATTGTTCATCAGGCGAAACGCAAGATTGTGAAAATCGCCGCTGGAGAGAATCACCTCGTGATGCTCGACGAGAAGGGATGCATTCTCACTTTCGGAGATGGTGAGATGGGCCAACTCGGACGAAGTAGCCGTACTAAAACCATCCGATCTAGTAAGATATTCTGTTGACGAGTTTGCCAGCTTATTTCTCGTTTTCAGAGTTCATGTGCGACGAGTCAGGTGACCATCTTGTCGTTCCATTGAGATTCAAGAACAAAGGAAAGTTCTACGATGTTGTTGCGAAAAACGTCTTTGCCAGTGGATTCTGGACTATCGTTCATGGAGAAGATGGGAAGTACTACGCTTTCGGACTCAACAACTACGCACAGCTTGGAATCAAAGTCGACGAGGCCGATGTTGGACAAGACGGTCAGGATAACCGCGAGCTTCGTGTCTTCCTCCCTGCTGAAGCACCGGCGTTCGGAGCCGAGCAGACATTTGTCAACATCGAAGGAGTTCAACACGTCGTGCTTCTCGATAACGAAGGAAAGGTTTTCGCCATGGGCAAGAACACCGACAACGCGCTTGGACTCGGAAACTGGACCGGAAAGGACGATCAACAGCACTGGCTCTATGACTCTCTTCAACAAGTCGAGTTCGACTCGAAGATCGTCGGAGTGTCTGCCAAGTTGGCTACTTCTATTGCTTGGTCCGAAGATGG</canonical>
            <polymorphic>GGAGTTCACTCAGCTGTCCTCACTTCCGAAGGACAAGTCTTCATGTGCGGTATCAACGAGAAGGGCACCGTTCCAGCGGAAGGAGTTGAAATGGAGGGAAGTACCGACGAATTCACAAAGGTCCCATTCTCAGACGAGATTCAAGAGGAGGGAAAAATCATCATGTTGGCTGCTGGCGCCTCTTTCACCGCCGGACTGACTGATCAAGGATCCGTGATCGCTTGGGGAAATCTTCGCAATTCCAACGGAAACGTCGATGTTCATCCACTTCTCCACAAGATGCAGGAGAAGCCTGTCGTCATTGTTCATCAGGCGAAACGCAAGATTGTGAAAATCGCCGCTGGAGAGAATCACCTCGTGATGCTCGACGAGAAGGGATGCATTCTCACTTTCGGAGATGGTGAGATGGGCCAACTCGGACGAAGTAGCCGTACTAAAACCATCCGATCTAGTAAGATATTCTGTTGACGAGTTTGCCAGCTTATTTCTCGTTTTCAGARTTCATGTGCGACGAGTCAGGTGACCATCTTGTCGTTCCATTGAGATTCAAGAACAAAGGAAAGTTCTACGATGTTGTTGCGAAAAACGTCTTTGCCAGTGGATTCTGGACTATCGTTCATGGAGAAGATGGGAAGTACTACGCTTTCGGACTCAACAACTACGCACAGCTTGGAATCAAAGTCGACGAGGCCGATGTTGGACAAGACGGTCAGGATAACCGCGAGCTTCGTGTCTTCCTCCCTGCTGAAGCACCGGCGTTCGGAGCCGAGCAGACATTTGTCAACATCGAAGGAGTTCAACACGTCGTGCTTCTCGATAACGAAGGAAAGGTTTTCGCCATGGGCAAGAACACCGACAACGCGCTTGGACTCGGAAACTGGACCGGAAAGGACGATCAACAGCACTGGCTCTATGACTCTCTTCAACAAGTCGAGTTCGACTCGAAGATCGTCGGAGTGTCTGCCAAGTTGGCTACTTCTATTGCTTGGTCCGAAGATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACGAAGTAGCCGTACTAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTGAGTCCGAAAGCGTAGTA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GACGAAGTAGCCGTACTAAAACCATCCGATCTAGTAAGATATTCTGTTGACGAGTTTGCCAGCTTATTTCTCGTTTTCAGAGTTCATGTGCGACGAGTCAGGTGACCATCTTGTCGTTCCATTGAGATTCAAGAACAAAGGAAAGTTCTACGATGTTGTTGCGAAAAACGTCTTTGCCAGTGGATTCTGGACTATCGTTCATGGAGAAGATGGGAAGTACTACGCTTTCGGACTCAA</canonical_amplicon>
		<polymorphic_amplicon>GACGAAGTAGCCGTACTAAAACCATCCGATCTAGTAAGATATTCTGTTGACGAGTTTGCCAGCTTATTTCTCGTTTTCAGARTTCATGTGCGACGAGTCAGGTGACCATCTTGTCGTTCCATTGAGATTCAAGAACAAAGGAAAGTTCTACGATGTTGTTGCGAAAAACGTCTTTGCCAGTGGATTCTGGACTATCGTTCATGGAGAAGATGGGAAGTACTACGCTTTCGGACTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27753</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>238089</contig_pos>
        <strand>+</strand>
        <context>GTCAATCTAT[C/T]TCCGACCAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCGATGGCGTTGTCGTAGCTTGCCTTCGCGAGAAGTTCCGTCAATCTAT</left_flank>
        <right_flank>TCCGACCAAAATCACATTGAATTCTCTCCACGTTGCTCAGCAGAAGTCTC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTGTAACAAGGCTGAGACGTTCGAAGAGACCGTGGAATGTCTTCGTTTGAATTTCGAACAACTTGGACCAGACTGCAAATCGATGATCTTCTACAGAGAGAAAATCGAGGCTGTTGACAATTCGATGGATGACGAGCTCCAGAAGAAGTGTAGATATGATATATCGAAATTCTGTGGAAACAGTGACTCGGAGAATGTTCTGGAATGTTTGACGAACACGAAAATTGTGAGATTACTTCAAAGAGAATGCAAGGCGGTGGTGAAGGAGAGAATGCAAGAGTCGGCGAGAGATGTGAGGTTGAGACCACAACTTTTGACTTCGTGTAGAAAGGAGGCTGAGACTTAGTGAGTTTCTTGTTTTAAATAGTTATGAGCAATAATCTTGAAATTTCCAGCTGCCCTGAGGACATGAAGAAGATCAATATGCCCCAATACTCCCAGACAGTTCTCGATGGCGTTGTCGTAGCTTGCCTTCGCGAGAAGTTCCGTCAATCTATCTCCGACCAAAATCACATTGAATTCTCTCCACGTTGCTCAGCAGAAGTCTCCAGAGCTATCGTTGAAGCAGAGTTCGATCCACAACTCGATCCACCACTCTACAACGCTTGCAAGTCAACTATCAACTCCCGTTGCTCAGCACAAATTTTGGAGTCTGGAGGACATTTCGACAATGTGATGGAGTGTTTGAAGGCGGATTTCAATAAGGGACTGATCAAGGATAATTCGTGTGCCGGACAAGTGGCCAGGCGGCTTCAGGAGTCGTTGGTGGATATTCATTTGGATCCAGTGCTGCATGAAGCGTGTGCGATGGATATTCAGAGGAATTGTAGAGATGTGCCGCCAGGACATAGTAGAAGTGAGTGTTTTGGATCCTTGAACTCAGTAAAAATTTTCAAAGCACTCTGGGAGTTTACCGTATTTTCTCTAATTTTGAGCTCAATTATCTCGATTCCCGTGAGAGATATCGAAATTGTGTCAACTGATAAAGGATCTTTGAT</canonical>
            <polymorphic>AACTGTAACAAGGCTGAGACGTTCGAAGAGACCGTGGAATGTCTTCGTTTGAATTTCGAACAACTTGGACCAGACTGCAAATCGATGATCTTCTACAGAGAGAAAATCGAGGCTGTTGACAATTCGATGGATGACGAGCTCCAGAAGAAGTGTAGATATGATATATCGAAATTCTGTGGAAACAGTGACTCGGAGAATGTTCTGGAATGTTTGACGAACACGAAAATTGTGAGATTACTTCAAAGAGAATGCAAGGCGGTGGTGAAGGAGAGAATGCAAGAGTCGGCGAGAGATGTGAGGTTGAGACCACAACTTTTGACTTCGTGTAGAAAGGAGGCTGAGACTTAGTGAGTTTCTTGTTTTAAATAGTTATGAGCAATAATCTTGAAATTTCCAGCTGCCCTGAGGACATGAAGAAGATCAATATGCCCCAATACTCCCAGACAGTTCTCGATGGCGTTGTCGTAGCTTGCCTTCGCGAGAAGTTCCGTCAATCTATYTCCGACCAAAATCACATTGAATTCTCTCCACGTTGCTCAGCAGAAGTCTCCAGAGCTATCGTTGAAGCAGAGTTCGATCCACAACTCGATCCACCACTCTACAACGCTTGCAAGTCAACTATCAACTCCCGTTGCTCAGCACAAATTTTGGAGTCTGGAGGACATTTCGACAATGTGATGGAGTGTTTGAAGGCGGATTTCAATAAGGGACTGATCAAGGATAATTCGTGTGCCGGACAAGTGGCCAGGCGGCTTCAGGAGTCGTTGGTGGATATTCATTTGGATCCAGTGCTGCATGAAGCGTGTGCGATGGATATTCAGAGGAATTGTAGAGATGTGCCGCCAGGACATAGTAGAAGTGAGTGTTTTGGATCCTTGAACTCAGTAAAAATTTTCAAAGCACTCTGGGAGTTTACCGTATTTTCTCTAATTTTGAGCTCAATTATCTCGATTCCCGTGAGAGATATCGAAATTGTGTCAACTGATAAAGGATCTTTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGACATGAAGAAGATCAATATG</pcr_primer_p1>
		<pcr_primer_p2>ACTCCAAAATTTGTGCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGGACATGAAGAAGATCAATATGCCCCAATACTCCCAGACAGTTCTCGATGGCGTTGTCGTAGCTTGCCTTCGCGAGAAGTTCCGTCAATCTATCTCCGACCAAAATCACATTGAATTCTCTCCACGTTGCTCAGCAGAAGTCTCCAGAGCTATCGTTGAAGCAGAGTTCGATCCACAACTCGATCCACCACTCTACAACGCTTGCAAGTCAACTATCAACTCCCGTTGCTCAGCACAAATTTTGGAGT</canonical_amplicon>
		<polymorphic_amplicon>AGGACATGAAGAAGATCAATATGCCCCAATACTCCCAGACAGTTCTCGATGGCGTTGTCGTAGCTTGCCTTCGCGAGAAGTTCCGTCAATCTATYTCCGACCAAAATCACATTGAATTCTCTCCACGTTGCTCAGCAGAAGTCTCCAGAGCTATCGTTGAAGCAGAGTTCGATCCACAACTCGATCCACCACTCTACAACGCTTGCAAGTCAACTATCAACTCCCGTTGCTCAGCACAAATTTTGGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27754</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>238398</contig_pos>
        <strand>+</strand>
        <context>AAGCGTGTGC[A/G]ATGGATATTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGTCGTTGGTGGATATTCATTTGGATCCAGTGCTGCATGAAGCGTGTGC</left_flank>
        <right_flank>ATGGATATTCAGAGGAATTGTAGAGATGTGCCGCCAGGACATAGTAGAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACTTTTGACTTCGTGTAGAAAGGAGGCTGAGACTTAGTGAGTTTCTTGTTTTAAATAGTTATGAGCAATAATCTTGAAATTTCCAGCTGCCCTGAGGACATGAAGAAGATCAATATGCCCCAATACTCCCAGACAGTTCTCGATGGCGTTGTCGTAGCTTGCCTTCGCGAGAAGTTCCGTCAATCTATCTCCGACCAAAATCACATTGAATTCTCTCCACGTTGCTCAGCAGAAGTCTCCAGAGCTATCGTTGAAGCAGAGTTCGATCCACAACTCGATCCACCACTCTACAACGCTTGCAAGTCAACTATCAACTCCCGTTGCTCAGCACAAATTTTGGAGTCTGGAGGACATTTCGACAATGTGATGGAGTGTTTGAAGGCGGATTTCAATAAGGGACTGATCAAGGATAATTCGTGTGCCGGACAAGTGGCCAGGCGGCTTCAGGAGTCGTTGGTGGATATTCATTTGGATCCAGTGCTGCATGAAGCGTGTGCGATGGATATTCAGAGGAATTGTAGAGATGTGCCGCCAGGACATAGTAGAAGTGAGTGTTTTGGATCCTTGAACTCAGTAAAAATTTTCAAAGCACTCTGGGAGTTTACCGTATTTTCTCTAATTTTGAGCTCAATTATCTCGATTCCCGTGAGAGATATCGAAATTGTGTCAACTGATAAAGGATCTTTGATATTATGATAAATCATTTATCAGTTGACAAACTTTAGATATCTTTTGAAAGAATCGAGATAATTGAGCTTGAGGGTTTAGGTGAGCTTCTATTAGAGTCATAAACTTCATAAACTCACGATTTTTGAATCATTGGAGTTTTGGAACTTAGGAATCTTCGAATTATAAGAATCTTAGAATCCAAAAAAATTTAATTTTTCAATCTGAAATTTCAGTCGTCATGTGCCTTATGGATTCTGCTGACAAACAACAACTCTCCAAAGAATGCTCGACAAAACTCAATGATCGAAACAAGCTGTGGATGAAGGCTC</canonical>
            <polymorphic>CAACTTTTGACTTCGTGTAGAAAGGAGGCTGAGACTTAGTGAGTTTCTTGTTTTAAATAGTTATGAGCAATAATCTTGAAATTTCCAGCTGCCCTGAGGACATGAAGAAGATCAATATGCCCCAATACTCCCAGACAGTTCTCGATGGCGTTGTCGTAGCTTGCCTTCGCGAGAAGTTCCGTCAATCTATCTCCGACCAAAATCACATTGAATTCTCTCCACGTTGCTCAGCAGAAGTCTCCAGAGCTATCGTTGAAGCAGAGTTCGATCCACAACTCGATCCACCACTCTACAACGCTTGCAAGTCAACTATCAACTCCCGTTGCTCAGCACAAATTTTGGAGTCTGGAGGACATTTCGACAATGTGATGGAGTGTTTGAAGGCGGATTTCAATAAGGGACTGATCAAGGATAATTCGTGTGCCGGACAAGTGGCCAGGCGGCTTCAGGAGTCGTTGGTGGATATTCATTTGGATCCAGTGCTGCATGAAGCGTGTGCRATGGATATTCAGAGGAATTGTAGAGATGTGCCGCCAGGACATAGTAGAAGTGAGTGTTTTGGATCCTTGAACTCAGTAAAAATTTTCAAAGCACTCTGGGAGTTTACCGTATTTTCTCTAATTTTGAGCTCAATTATCTCGATTCCCGTGAGAGATATCGAAATTGTGTCAACTGATAAAGGATCTTTGATATTATGATAAATCATTTATCAGTTGACAAACTTTAGATATCTTTTGAAAGAATCGAGATAATTGAGCTTGAGGGTTTAGGTGAGCTTCTATTAGAGTCATAAACTTCATAAACTCACGATTTTTGAATCATTGGAGTTTTGGAACTTAGGAATCTTCGAATTATAAGAATCTTAGAATCCAAAAAAATTTAATTTTTCAATCTGAAATTTCAGTCGTCATGTGCCTTATGGATTCTGCTGACAAACAACAACTCTCCAAAGAATGCTCGACAAAACTCAATGATCGAAACAAGCTGTGGATGAAGGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTGATGGAGTGTTTGAAG</pcr_primer_p1>
		<pcr_primer_p2>ATACGGTAAACTCCCAGAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATGTGATGGAGTGTTTGAAGGCGGATTTCAATAAGGGACTGATCAAGGATAATTCGTGTGCCGGACAAGTGGCCAGGCGGCTTCAGGAGTCGTTGGTGGATATTCATTTGGATCCAGTGCTGCATGAAGCGTGTGCGATGGATATTCAGAGGAATTGTAGAGATGTGCCGCCAGGACATAGTAGAAGTGAGTGTTTTGGATCCTTGAACTCAGTAAAAATTTTCAAAGCACTCTGGGAGTTTACCGTAT</canonical_amplicon>
		<polymorphic_amplicon>AATGTGATGGAGTGTTTGAAGGCGGATTTCAATAAGGGACTGATCAAGGATAATTCGTGTGCCGGACAAGTGGCCAGGCGGCTTCAGGAGTCGTTGGTGGATATTCATTTGGATCCAGTGCTGCATGAAGCGTGTGCRATGGATATTCAGAGGAATTGTAGAGATGTGCCGCCAGGACATAGTAGAAGTGAGTGTTTTGGATCCTTGAACTCAGTAAAAATTTTCAAAGCACTCTGGGAGTTTACCGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27755</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>238470</contig_pos>
        <strand></strand>
        <context>GATCCTTGAA[C/T]YCAGTAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAGATGTGCCGCCAGGACATAGTAGAAGTGAGTGTTTTGGATCCTTGAA</left_flank>
        <right_flank>TCAGTAAAAATTTTCAAAGCACTCTGGGAGTTTACCGTATTTTCTCTAAT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTTGAAATTTCCAGCTGCCCTGAGGACATGAAGAAGATCAATATGCCCCAATACTCCCAGACAGTTCTCGATGGCGTTGTCGTAGCTTGCCTTCGCGAGAAGTTCCGTCAATCTATCTCCGACCAAAATCACATTGAATTCTCTCCACGTTGCTCAGCAGAAGTCTCCAGAGCTATCGTTGAAGCAGAGTTCGATCCACAACTCGATCCACCACTCTACAACGCTTGCAAGTCAACTATCAACTCCCGTTGCTCAGCACAAATTTTGGAGTCTGGAGGACATTTCGACAATGTGATGGAGTGTTTGAAGGCGGATTTCAATAAGGGACTGATCAAGGATAATTCGTGTGCCGGACAAGTGGCCAGGCGGCTTCAGGAGTCGTTGGTGGATATTCATTTGGATCCAGTGCTGCATGAAGCGTGTGCGATGGATATTCAGAGGAATTGTAGAGATGTGCCGCCAGGACATAGTAGAAGTGAGTGTTTTGGATCCTTGAACTCAGTAAAAATTTTCAAAGCACTCTGGGAGTTTACCGTATTTTCTCTAATTTTGAGCTCAATTATCTCGATTCCCGTGAGAGATATCGAAATTGTGTCAACTGATAAAGGATCTTTGATATTATGATAAATCATTTATCAGTTGACAAACTTTAGATATCTTTTGAAAGAATCGAGATAATTGAGCTTGAGGGTTTAGGTGAGCTTCTATTAGAGTCATAAACTTCATAAACTCACGATTTTTGAATCATTGGAGTTTTGGAACTTAGGAATCTTCGAATTATAAGAATCTTAGAATCCAAAAAAATTTAATTTTTCAATCTGAAATTTCAGTCGTCATGTGCCTTATGGATTCTGCTGACAAACAACAACTCTCCAAAGAATGCTCGACAAAACTCAATGATCGAAACAAGCTGTGGATGAAGGCTCACTCAGAATTCCAGATGGCTCTTCCAGATTCGTGGCACGCCTTCGCCACGCTGGTCATGGAGCATCCGGAGA</canonical>
            <polymorphic>ATCTTGAAATTTCCAGCTGCCCTGAGGACATGAAGAAGATCAATATGCCCCAATACTCCCAGACAGTTCTCGATGGCGTTGTCGTAGCTTGCCTTCGCGAGAAGTTCCGTCAATCTATCTCCGACCAAAATCACATTGAATTCTCTCCACGTTGCTCAGCAGAAGTCTCCAGAGCTATCGTTGAAGCAGAGTTCGATCCACAACTCGATCCACCACTCTACAACGCTTGCAAGTCAACTATCAACTCCCGTTGCTCAGCACAAATTTTGGAGTCTGGAGGACATTTCGACAATGTGATGGAGTGTTTGAAGGCGGATTTCAATAAGGGACTGATCAAGGATAATTCGTGTGCCGGACAAGTGGCCAGGCGGCTTCAGGAGTCGTTGGTGGATATTCATTTGGATCCAGTGCTGCATGAAGCGTGTGCGATGGATATTCAGAGGAATTGTAGAGATGTGCCGCCAGGACATAGTAGAAGTGAGTGTTTTGGATCCTTGAAYTCAGTAAAAATTTTCAAAGCACTCTGGGAGTTTACCGTATTTTCTCTAATTTTGAGCTCAATTATCTCGATTCCCGTGAGAGATATCGAAATTGTGTCAACTGATAAAGGATCTTTGATATTATGATAAATCATTTATCAGTTGACAAACTTTAGATATCTTTTGAAAGAATCGAGATAATTGAGCTTGAGGGTTTAGGTGAGCTTCTATTAGAGTCATAAACTTCATAAACTCACGATTTTTGAATCATTGGAGTTTTGGAACTTAGGAATCTTCGAATTATAAGAATCTTAGAATCCAAAAAAATTTAATTTTTCAATCTGAAATTTCAGTCGTCATGTGCCTTATGGATTCTGCTGACAAACAACAACTCTCCAAAGAATGCTCGACAAAACTCAATGATCGAAACAAGCTGTGGATGAAGGCTCACTCAGAATTCCAGATGGCTCTTCCAGATTCGTGGCACGCCTTCGCCACGCTGGTCATGGAGCATCCGGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>264 246 140 133 99 70 26 22</canonical_bands>
                <polymorphic_bands>510 140 133 99 70 26 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAGAGGAATTGTAGAGATGTG</pcr_primer_p1>
		<pcr_primer_p2>AATCGTGAGTTTATGAAGTTTATG</pcr_primer_p2>
		<pcr_amplicon_size>305</pcr_amplicon_size>
		<canonical_amplicon>TTCAGAGGAATTGTAGAGATGTGCCGCCAGGACATAGTAGAAGTGAGTGTTTTGGATCCTTGAACTCAGTAAAAATTTTCAAAGCACTCTGGGAGTTTACCGTATTTTCTCTAATTTTGAGCTCAATTATCTCGATTCCCGTGAGAGATATCGAAATTGTGTCAACTGATAAAGGATCTTTGATATTATGATAAATCATTTATCAGTTGACAAACTTTAGATATCTTTTGAAAGAATCGAGATAATTGAGCTTGAGGGTTTAGGTGAGCTTCTATTAGAGTCATAAACTTCATAAACTCACGATT</canonical_amplicon>
		<polymorphic_amplicon>TTCAGAGGAATTGTAGAGATGTGCCGCCAGGACATAGTAGAAGTGAGTGTTTTGGATCCTTGAAYTCAGTAAAAATTTTCAAAGCACTCTGGGAGTTTACCGTATTTTCTCTAATTTTGAGCTCAATTATCTCGATTCCCGTGAGAGATATCGAAATTGTGTCAACTGATAAAGGATCTTTGATATTATGATAAATCATTTATCAGTTGACAAACTTTAGATATCTTTTGAAAGAATCGAGATAATTGAGCTTGAGGGTTTAGGTGAGCTTCTATTAGAGTCATAAACTTCATAAACTCACGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27756</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>238471</contig_pos>
        <strand>+</strand>
        <context>ATCCTTGAAY[C/T]CAGTAAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGATGTGCCGCCAGGACATAGTAGAAGTGAGTGTTTTGGATCCTTGAAC</left_flank>
        <right_flank>CAGTAAAAATTTTCAAAGCACTCTGGGAGTTTACCGTATTTTCTCTAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTGAAATTTCCAGCTGCCCTGAGGACATGAAGAAGATCAATATGCCCCAATACTCCCAGACAGTTCTCGATGGCGTTGTCGTAGCTTGCCTTCGCGAGAAGTTCCGTCAATCTATCTCCGACCAAAATCACATTGAATTCTCTCCACGTTGCTCAGCAGAAGTCTCCAGAGCTATCGTTGAAGCAGAGTTCGATCCACAACTCGATCCACCACTCTACAACGCTTGCAAGTCAACTATCAACTCCCGTTGCTCAGCACAAATTTTGGAGTCTGGAGGACATTTCGACAATGTGATGGAGTGTTTGAAGGCGGATTTCAATAAGGGACTGATCAAGGATAATTCGTGTGCCGGACAAGTGGCCAGGCGGCTTCAGGAGTCGTTGGTGGATATTCATTTGGATCCAGTGCTGCATGAAGCGTGTGCGATGGATATTCAGAGGAATTGTAGAGATGTGCCGCCAGGACATAGTAGAAGTGAGTGTTTTGGATCCTTGAACTCAGTAAAAATTTTCAAAGCACTCTGGGAGTTTACCGTATTTTCTCTAATTTTGAGCTCAATTATCTCGATTCCCGTGAGAGATATCGAAATTGTGTCAACTGATAAAGGATCTTTGATATTATGATAAATCATTTATCAGTTGACAAACTTTAGATATCTTTTGAAAGAATCGAGATAATTGAGCTTGAGGGTTTAGGTGAGCTTCTATTAGAGTCATAAACTTCATAAACTCACGATTTTTGAATCATTGGAGTTTTGGAACTTAGGAATCTTCGAATTATAAGAATCTTAGAATCCAAAAAAATTTAATTTTTCAATCTGAAATTTCAGTCGTCATGTGCCTTATGGATTCTGCTGACAAACAACAACTCTCCAAAGAATGCTCGACAAAACTCAATGATCGAAACAAGCTGTGGATGAAGGCTCACTCAGAATTCCAGATGGCTCTTCCAGATTCGTGGCACGCCTTCGCCACGCTGGTCATGGAGCATCCGGAGAG</canonical>
            <polymorphic>TCTTGAAATTTCCAGCTGCCCTGAGGACATGAAGAAGATCAATATGCCCCAATACTCCCAGACAGTTCTCGATGGCGTTGTCGTAGCTTGCCTTCGCGAGAAGTTCCGTCAATCTATCTCCGACCAAAATCACATTGAATTCTCTCCACGTTGCTCAGCAGAAGTCTCCAGAGCTATCGTTGAAGCAGAGTTCGATCCACAACTCGATCCACCACTCTACAACGCTTGCAAGTCAACTATCAACTCCCGTTGCTCAGCACAAATTTTGGAGTCTGGAGGACATTTCGACAATGTGATGGAGTGTTTGAAGGCGGATTTCAATAAGGGACTGATCAAGGATAATTCGTGTGCCGGACAAGTGGCCAGGCGGCTTCAGGAGTCGTTGGTGGATATTCATTTGGATCCAGTGCTGCATGAAGCGTGTGCGATGGATATTCAGAGGAATTGTAGAGATGTGCCGCCAGGACATAGTAGAAGTGAGTGTTTTGGATCCTTGAACYCAGTAAAAATTTTCAAAGCACTCTGGGAGTTTACCGTATTTTCTCTAATTTTGAGCTCAATTATCTCGATTCCCGTGAGAGATATCGAAATTGTGTCAACTGATAAAGGATCTTTGATATTATGATAAATCATTTATCAGTTGACAAACTTTAGATATCTTTTGAAAGAATCGAGATAATTGAGCTTGAGGGTTTAGGTGAGCTTCTATTAGAGTCATAAACTTCATAAACTCACGATTTTTGAATCATTGGAGTTTTGGAACTTAGGAATCTTCGAATTATAAGAATCTTAGAATCCAAAAAAATTTAATTTTTCAATCTGAAATTTCAGTCGTCATGTGCCTTATGGATTCTGCTGACAAACAACAACTCTCCAAAGAATGCTCGACAAAACTCAATGATCGAAACAAGCTGTGGATGAAGGCTCACTCAGAATTCCAGATGGCTCTTCCAGATTCGTGGCACGCCTTCGCCACGCTGGTCATGGAGCATCCGGAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>264 246 140 133 99 71 26 21</canonical_bands>
                <polymorphic_bands>510 140 133 99 71 26 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAGAGGAATTGTAGAGATGTG</pcr_primer_p1>
		<pcr_primer_p2>AATCGTGAGTTTATGAAGTTTATG</pcr_primer_p2>
		<pcr_amplicon_size>305</pcr_amplicon_size>
		<canonical_amplicon>TTCAGAGGAATTGTAGAGATGTGCCGCCAGGACATAGTAGAAGTGAGTGTTTTGGATCCTTGAACTCAGTAAAAATTTTCAAAGCACTCTGGGAGTTTACCGTATTTTCTCTAATTTTGAGCTCAATTATCTCGATTCCCGTGAGAGATATCGAAATTGTGTCAACTGATAAAGGATCTTTGATATTATGATAAATCATTTATCAGTTGACAAACTTTAGATATCTTTTGAAAGAATCGAGATAATTGAGCTTGAGGGTTTAGGTGAGCTTCTATTAGAGTCATAAACTTCATAAACTCACGATT</canonical_amplicon>
		<polymorphic_amplicon>TTCAGAGGAATTGTAGAGATGTGCCGCCAGGACATAGTAGAAGTGAGTGTTTTGGATCCTTGAACYCAGTAAAAATTTTCAAAGCACTCTGGGAGTTTACCGTATTTTCTCTAATTTTGAGCTCAATTATCTCGATTCCCGTGAGAGATATCGAAATTGTGTCAACTGATAAAGGATCTTTGATATTATGATAAATCATTTATCAGTTGACAAACTTTAGATATCTTTTGAAAGAATCGAGATAATTGAGCTTGAGGGTTTAGGTGAGCTTCTATTAGAGTCATAAACTTCATAAACTCACGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27757</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>238545</contig_pos>
        <strand></strand>
        <context>tctcgattcc[C/A]gtgagagata</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TGGGAGTTTACCGTATTTTCTCTAATTTTGAGCTCAATTATCTCGATTCC</left_flank>
        <right_flank>GTGAGAGATATCGAAATTGTGTCAACTGATAAAGGATCTTTGATATTATG</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGTTGTCGTAGCTTGCCTTCGCGAGAAGTTCCGTCAATCTATCTCCGACCAAAATCACATTGAATTCTCTCCACGTTGCTCAGCAGAAGTCTCCAGAGCTATCGTTGAAGCAGAGTTCGATCCACAACTCGATCCACCACTCTACAACGCTTGCAAGTCAACTATCAACTCCCGTTGCTCAGCACAAATTTTGGAGTCTGGAGGACATTTCGACAATGTGATGGAGTGTTTGAAGGCGGATTTCAATAAGGGACTGATCAAGGATAATTCGTGTGCCGGACAAGTGGCCAGGCGGCTTCAGGAGTCGTTGGTGGATATTCATTTGGATCCAGTGCTGCATGAAGCGTGTGCGATGGATATTCAGAGGAATTGTAGAGATGTGCCGCCAGGACATAGTAGAAGTGAGTGTTTTGGATCCTTGAACTCAGTAAAAATTTTCAAAGCACTCTGGGAGTTTACCGTATTTTCTCTAATTTTGAGCTCAATTATCTCGATTCCCGTGAGAGATATCGAAATTGTGTCAACTGATAAAGGATCTTTGATATTATGATAAATCATTTATCAGTTGACAAACTTTAGATATCTTTTGAAAGAATCGAGATAATTGAGCTTGAGGGTTTAGGTGAGCTTCTATTAGAGTCATAAACTTCATAAACTCACGATTTTTGAATCATTGGAGTTTTGGAACTTAGGAATCTTCGAATTATAAGAATCTTAGAATCCAAAAAAATTTAATTTTTCAATCTGAAATTTCAGTCGTCATGTGCCTTATGGATTCTGCTGACAAACAACAACTCTCCAAAGAATGCTCGACAAAACTCAATGATCGAAACAAGCTGTGGATGAAGGCTCACTCAGAATTCCAGATGGCTCTTCCAGATTCGTGGCACGCCTTCGCCACGCTGGTCATGGAGCATCCGGAGAGAAACTCCATTCTTGGATATATTGCCGGATTTGTTGTATTCGTTCTTCTAGTCGGTTGCTGTTGCGGACGAGTTT</canonical>
            <polymorphic>GCGTTGTCGTAGCTTGCCTTCGCGAGAAGTTCCGTCAATCTATCTCCGACCAAAATCACATTGAATTCTCTCCACGTTGCTCAGCAGAAGTCTCCAGAGCTATCGTTGAAGCAGAGTTCGATCCACAACTCGATCCACCACTCTACAACGCTTGCAAGTCAACTATCAACTCCCGTTGCTCAGCACAAATTTTGGAGTCTGGAGGACATTTCGACAATGTGATGGAGTGTTTGAAGGCGGATTTCAATAAGGGACTGATCAAGGATAATTCGTGTGCCGGACAAGTGGCCAGGCGGCTTCAGGAGTCGTTGGTGGATATTCATTTGGATCCAGTGCTGCATGAAGCGTGTGCGATGGATATTCAGAGGAATTGTAGAGATGTGCCGCCAGGACATAGTAGAAGTGAGTGTTTTGGATCCTTGAACTCAGTAAAAATTTTCAAAGCACTCTGGGAGTTTACCGTATTTTCTCTAATTTTGAGCTCAATTATCTCGATTCCMGTGAGAGATATCGAAATTGTGTCAACTGATAAAGGATCTTTGATATTATGATAAATCATTTATCAGTTGACAAACTTTAGATATCTTTTGAAAGAATCGAGATAATTGAGCTTGAGGGTTTAGGTGAGCTTCTATTAGAGTCATAAACTTCATAAACTCACGATTTTTGAATCATTGGAGTTTTGGAACTTAGGAATCTTCGAATTATAAGAATCTTAGAATCCAAAAAAATTTAATTTTTCAATCTGAAATTTCAGTCGTCATGTGCCTTATGGATTCTGCTGACAAACAACAACTCTCCAAAGAATGCTCGACAAAACTCAATGATCGAAACAAGCTGTGGATGAAGGCTCACTCAGAATTCCAGATGGCTCTTCCAGATTCGTGGCACGCCTTCGCCACGCTGGTCATGGAGCATCCGGAGAGAAACTCCATTCTTGGATATATTGCCGGATTTGTTGTATTCGTTCTTCTAGTCGGTTGCTGTTGCGGACGAGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGGAGTTTACCGTATTTTCT</pcr_primer_p1>
		<pcr_primer_p2>AAGATTCCTAAGTTCCAAAACTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGGGAGTTTACCGTATTTTCTCTAATTTTGAGCTCAATTATCTCGATTCCCGTGAGAGATATCGAAATTGTGTCAACTGATAAAGGATCTTTGATATTATGATAAATCATTTATCAGTTGACAAACTTTAGATATCTTTTGAAAGAATCGAGATAATTGAGCTTGAGGGTTTAGGTGAGCTTCTATTAGAGTCATAAACTTCATAAACTCACGATTTTTGAATCATTGGAGTTTTGGAACTTAGGAATCTT</canonical_amplicon>
		<polymorphic_amplicon>TGGGAGTTTACCGTATTTTCTCTAATTTTGAGCTCAATTATCTCGATTCCMGTGAGAGATATCGAAATTGTGTCAACTGATAAAGGATCTTTGATATTATGATAAATCATTTATCAGTTGACAAACTTTAGATATCTTTTGAAAGAATCGAGATAATTGAGCTTGAGGGTTTAGGTGAGCTTCTATTAGAGTCATAAACTTCATAAACTCACGATTTTTGAATCATTGGAGTTTTGGAACTTAGGAATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27758</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>241766</contig_pos>
        <strand>+</strand>
        <context>AGTGTTCGGA[C/T]TGTTCAAGCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGCGAGAAGGCAGCAGAAGTTGTCAGCGAAGCTCTGAACAGTGTTCGGA</left_flank>
        <right_flank>TGTTCAAGCCTTCAACGGACAGGAAGAAATCATTGAAAAATACGGAAACG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCAAAAAGTTTCTTGCAGTCTTATCTGATCCAGACAGCAATTTTTCGAATGACACAATCCTTGGAGCATCTCTTCCCGACGTCCGTTCTTCGTCAAGAATCCGAATGGCACGATAGACACAGTGCAGGAACGTTGAAGACAAAGTTCAATGAGTAAGATTTCGAATATATTGAGAAAAAAAACCAACAGATTTTTAGAAACATGGGTATAATCAAGAGCAAACTTCCACAAATCAGCTTGTTGTTTTACAATTTCTCTGTCTATGCTTCCGGCGTCGGAGTTTCCTTCCACGTGTCTTGGAAACTAGCACTGCTTTCGATGCTCTCTCTTCCGATCATTATGTGTGCAAGAGCAATTTTGGCTAATGTAGGTTGTTTTAAACTTTTCAAAAAAAAAACCATGAGGCTTCCAGAAAAACAAAACGTACGAAGAGAAAAAGGAAAAGATCAGCGAGAAGGCAGCAGAAGTTGTCAGCGAAGCTCTGAACAGTGTTCGGACTGTTCAAGCCTTCAACGGACAGGAAGAAATCATTGAAAAATACGGAAACGCCTTCGAGAAATCTGCAACGTACTCTATCAAACAGGCCCTATGGGACGATGTGGTATGGAGTAATTGTGACTTGATGCTACTCACCATTTTTGGTGTTGCAATAAATTTTGGTGTCACACTTTATTGCAATAAGGAAATATTGGAAGTGGGGATGATCTTCACCGTCTTATTCGTTTGCCTCACCAGTTCTGCTATTGCCGGTACCTCCGCCCAGATTTTTAATGATGTCTTGAACGCAAGAGTAGCGGCTAGGCAAATTTATCGAGTCATTGAGAGGGTAGGTCTTGTTGTTTCAGAGTTGCAATGAATTCAAAAATTCTCAGGTCCCCAAAATCGACGCCATGTCAGCTGAAGGCCAAAAGCTACTGAATGTTTCTGGAAGAGTCGAATTTAGAAATGTCCATTTCCGTTACTCGACTAGAAGGGATGCAAAGATCTTGGATGGATTC</canonical>
            <polymorphic>AATCAAAAAGTTTCTTGCAGTCTTATCTGATCCAGACAGCAATTTTTCGAATGACACAATCCTTGGAGCATCTCTTCCCGACGTCCGTTCTTCGTCAAGAATCCGAATGGCACGATAGACACAGTGCAGGAACGTTGAAGACAAAGTTCAATGAGTAAGATTTCGAATATATTGAGAAAAAAAACCAACAGATTTTTAGAAACATGGGTATAATCAAGAGCAAACTTCCACAAATCAGCTTGTTGTTTTACAATTTCTCTGTCTATGCTTCCGGCGTCGGAGTTTCCTTCCACGTGTCTTGGAAACTAGCACTGCTTTCGATGCTCTCTCTTCCGATCATTATGTGTGCAAGAGCAATTTTGGCTAATGTAGGTTGTTTTAAACTTTTCAAAAAAAAAACCATGAGGCTTCCAGAAAAACAAAACGTACGAAGAGAAAAAGGAAAAGATCAGCGAGAAGGCAGCAGAAGTTGTCAGCGAAGCTCTGAACAGTGTTCGGAYTGTTCAAGCCTTCAACGGACAGGAAGAAATCATTGAAAAATACGGAAACGCCTTCGAGAAATCTGCAACGTACTCTATCAAACAGGCCCTATGGGACGATGTGGTATGGAGTAATTGTGACTTGATGCTACTCACCATTTTTGGTGTTGCAATAAATTTTGGTGTCACACTTTATTGCAATAAGGAAATATTGGAAGTGGGGATGATCTTCACCGTCTTATTCGTTTGCCTCACCAGTTCTGCTATTGCCGGTACCTCCGCCCAGATTTTTAATGATGTCTTGAACGCAAGAGTAGCGGCTAGGCAAATTTATCGAGTCATTGAGAGGGTAGGTCTTGTTGTTTCAGAGTTGCAATGAATTCAAAAATTCTCAGGTCCCCAAAATCGACGCCATGTCAGCTGAAGGCCAAAAGCTACTGAATGTTTCTGGAAGAGTCGAATTTAGAAATGTCCATTTCCGTTACTCGACTAGAAGGGATGCAAAGATCTTGGATGGATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>367 286 213 123 11</canonical_bands>
                <polymorphic_bands>367 286 224 123</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCATTATGTGTGCAAGAGC</pcr_primer_p1>
		<pcr_primer_p2>GTTTGATAGAGTACGTTGCAGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATCATTATGTGTGCAAGAGCAATTTTGGCTAATGTAGGTTGTTTTAAACTTTTCAAAAAAAAAACCATGAGGCTTCCAGAAAAACAAAACGTACGAAGAGAAAAAGGAAAAGATCAGCGAGAAGGCAGCAGAAGTTGTCAGCGAAGCTCTGAACAGTGTTCGGACTGTTCAAGCCTTCAACGGACAGGAAGAAATCATTGAAAAATACGGAAACGCCTTCGAGAAATCTGCAACGTACTCTATCAAAC</canonical_amplicon>
		<polymorphic_amplicon>GATCATTATGTGTGCAAGAGCAATTTTGGCTAATGTAGGTTGTTTTAAACTTTTCAAAAAAAAAACCATGAGGCTTCCAGAAAAACAAAACGTACGAAGAGAAAAAGGAAAAGATCAGCGAGAAGGCAGCAGAAGTTGTCAGCGAAGCTCTGAACAGTGTTCGGAYTGTTCAAGCCTTCAACGGACAGGAAGAAATCATTGAAAAATACGGAAACGCCTTCGAGAAATCTGCAACGTACTCTATCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27759</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>241814</contig_pos>
        <strand>+</strand>
        <context>AAATACGGAA[A/G]CGCCTTCGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACTGTTCAAGCCTTCAACGGACAGGAAGAAATCATTGAAAAATACGGAA</left_flank>
        <right_flank>CGCCTTCGAGAAATCTGCAACGTACTCTATCAAACAGGCCCTATGGGACG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATGACACAATCCTTGGAGCATCTCTTCCCGACGTCCGTTCTTCGTCAAGAATCCGAATGGCACGATAGACACAGTGCAGGAACGTTGAAGACAAAGTTCAATGAGTAAGATTTCGAATATATTGAGAAAAAAAACCAACAGATTTTTAGAAACATGGGTATAATCAAGAGCAAACTTCCACAAATCAGCTTGTTGTTTTACAATTTCTCTGTCTATGCTTCCGGCGTCGGAGTTTCCTTCCACGTGTCTTGGAAACTAGCACTGCTTTCGATGCTCTCTCTTCCGATCATTATGTGTGCAAGAGCAATTTTGGCTAATGTAGGTTGTTTTAAACTTTTCAAAAAAAAAACCATGAGGCTTCCAGAAAAACAAAACGTACGAAGAGAAAAAGGAAAAGATCAGCGAGAAGGCAGCAGAAGTTGTCAGCGAAGCTCTGAACAGTGTTCGGACTGTTCAAGCCTTCAACGGACAGGAAGAAATCATTGAAAAATACGGAAACGCCTTCGAGAAATCTGCAACGTACTCTATCAAACAGGCCCTATGGGACGATGTGGTATGGAGTAATTGTGACTTGATGCTACTCACCATTTTTGGTGTTGCAATAAATTTTGGTGTCACACTTTATTGCAATAAGGAAATATTGGAAGTGGGGATGATCTTCACCGTCTTATTCGTTTGCCTCACCAGTTCTGCTATTGCCGGTACCTCCGCCCAGATTTTTAATGATGTCTTGAACGCAAGAGTAGCGGCTAGGCAAATTTATCGAGTCATTGAGAGGGTAGGTCTTGTTGTTTCAGAGTTGCAATGAATTCAAAAATTCTCAGGTCCCCAAAATCGACGCCATGTCAGCTGAAGGCCAAAAGCTACTGAATGTTTCTGGAAGAGTCGAATTTAGAAATGTCCATTTCCGTTACTCGACTAGAAGGGATGCAAAGATCTTGGATGGATTCAACTTGTGTGTGGAACCTGGAACTTCTGTGGCTCTTGTCGGACACTCG</canonical>
            <polymorphic>GAATGACACAATCCTTGGAGCATCTCTTCCCGACGTCCGTTCTTCGTCAAGAATCCGAATGGCACGATAGACACAGTGCAGGAACGTTGAAGACAAAGTTCAATGAGTAAGATTTCGAATATATTGAGAAAAAAAACCAACAGATTTTTAGAAACATGGGTATAATCAAGAGCAAACTTCCACAAATCAGCTTGTTGTTTTACAATTTCTCTGTCTATGCTTCCGGCGTCGGAGTTTCCTTCCACGTGTCTTGGAAACTAGCACTGCTTTCGATGCTCTCTCTTCCGATCATTATGTGTGCAAGAGCAATTTTGGCTAATGTAGGTTGTTTTAAACTTTTCAAAAAAAAAACCATGAGGCTTCCAGAAAAACAAAACGTACGAAGAGAAAAAGGAAAAGATCAGCGAGAAGGCAGCAGAAGTTGTCAGCGAAGCTCTGAACAGTGTTCGGACTGTTCAAGCCTTCAACGGACAGGAAGAAATCATTGAAAAATACGGAARCGCCTTCGAGAAATCTGCAACGTACTCTATCAAACAGGCCCTATGGGACGATGTGGTATGGAGTAATTGTGACTTGATGCTACTCACCATTTTTGGTGTTGCAATAAATTTTGGTGTCACACTTTATTGCAATAAGGAAATATTGGAAGTGGGGATGATCTTCACCGTCTTATTCGTTTGCCTCACCAGTTCTGCTATTGCCGGTACCTCCGCCCAGATTTTTAATGATGTCTTGAACGCAAGAGTAGCGGCTAGGCAAATTTATCGAGTCATTGAGAGGGTAGGTCTTGTTGTTTCAGAGTTGCAATGAATTCAAAAATTCTCAGGTCCCCAAAATCGACGCCATGTCAGCTGAAGGCCAAAAGCTACTGAATGTTTCTGGAAGAGTCGAATTTAGAAATGTCCATTTCCGTTACTCGACTAGAAGGGATGCAAAGATCTTGGATGGATTCAACTTGTGTGTGGAACCTGGAACTTCTGTGGCTCTTGTCGGACACTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGAGAAAAAGGAAAAGATCAG</pcr_primer_p1>
		<pcr_primer_p2>CAATAAAGTGTGACACCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAGAGAAAAAGGAAAAGATCAGCGAGAAGGCAGCAGAAGTTGTCAGCGAAGCTCTGAACAGTGTTCGGACTGTTCAAGCCTTCAACGGACAGGAAGAAATCATTGAAAAATACGGAAACGCCTTCGAGAAATCTGCAACGTACTCTATCAAACAGGCCCTATGGGACGATGTGGTATGGAGTAATTGTGACTTGATGCTACTCACCATTTTTGGTGTTGCAATAAATTTTGGTGTCACACTTTATTG</canonical_amplicon>
		<polymorphic_amplicon>GAAGAGAAAAAGGAAAAGATCAGCGAGAAGGCAGCAGAAGTTGTCAGCGAAGCTCTGAACAGTGTTCGGACTGTTCAAGCCTTCAACGGACAGGAAGAAATCATTGAAAAATACGGAARCGCCTTCGAGAAATCTGCAACGTACTCTATCAAACAGGCCCTATGGGACGATGTGGTATGGAGTAATTGTGACTTGATGCTACTCACCATTTTTGGTGTTGCAATAAATTTTGGTGTCACACTTTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27760</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>247218</contig_pos>
        <strand>+</strand>
        <context>TATCTGAACT[C/G]GTGTTTTCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACACACATCTCTATCACTCCAGATTTTTAAAACTGCTCATTATCTGAACT</left_flank>
        <right_flank>GTGTTTTCTTTTCCTATCAGGTAGCATGATACACAGATATGACGTATCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCAAATATATATTTATTTTTTCGCATGTATTCATGTTGTGTGTAATTAGTCTGAACTTTTCAAAATCAAAGAAATTGTTAGTTTCCATGGGCTGGATTGAAAAACAGGCACCGTAAATACACTATCAGAATGATTCCCAATCCGTTAACTTTAAACCCATATATCTCTTGTCAAAAATGTAAAAACGTTTTTAACTGATAAATTGTTAATCACAATATCATAAACAATTCATCAGTTGACAACTTTTTGATACCATTCACCTGAAAGGAGATATACGGGCTCAAAGTTGACGCTTCGGGAAGAGGCCATTCTATCAGAGGGAGCGGTATTTGAGGTTATAACTCGTTGAACATTGTAATTGTTGAAAAAACTGAAACTGAAAGAAATTTCGACTATTTATTTACAAAATTGCTAACTGATAACACAAAAAGTGCCAGAAATCTTTCAACACACATCTCTATCACTCCAGATTTTTAAAACTGCTCATTATCTGAACTGGTGTTTTCTTTTCCTATCAGGTAGCATGATACACAGATATGACGTATCATTTGCTGTCAGACATAGTTAACCATTTTTGAATATAATCTAATTTTTCTCCTCCTACACATTTTGTTCTATTTTTTCCGTCGAAAAATTTACTGATTCTTATTTTTGTTTCCAGAGTCAAAATGTTCTAACCCTTTTGGTCATTTTCACGGAATTCGCTCTGATTGGTTTTGGAAAAATTATAAAAATTTTTTTGTTTGAATTTGTAAATACAAAGAAATTTGTATTATGTTCTTCCGCGTTTTTTTGTTCAACCAGTAAACAAGATATTTTTACGAAATGTTCTGGTTTCGAACTGAAAGTATACTGTAGTTTTTCTCATTCCTCGATATTCTGGGATTTGAGGATTCTGAGATTCCAAAAATTCTCCAATTCTGCTGAATTACATTTCCTGATCATTTTCATTGTTTTCCTATTACTTGATTCCATGACTAATATCCCAAAAATTGGTA</canonical>
            <polymorphic>TGGCAAATATATATTTATTTTTTCGCATGTATTCATGTTGTGTGTAATTAGTCTGAACTTTTCAAAATCAAAGAAATTGTTAGTTTCCATGGGCTGGATTGAAAAACAGGCACCGTAAATACACTATCAGAATGATTCCCAATCCGTTAACTTTAAACCCATATATCTCTTGTCAAAAATGTAAAAACGTTTTTAACTGATAAATTGTTAATCACAATATCATAAACAATTCATCAGTTGACAACTTTTTGATACCATTCACCTGAAAGGAGATATACGGGCTCAAAGTTGACGCTTCGGGAAGAGGCCATTCTATCAGAGGGAGCGGTATTTGAGGTTATAACTCGTTGAACATTGTAATTGTTGAAAAAACTGAAACTGAAAGAAATTTCGACTATTTATTTACAAAATTGCTAACTGATAACACAAAAAGTGCCAGAAATCTTTCAACACACATCTCTATCACTCCAGATTTTTAAAACTGCTCATTATCTGAACTSGTGTTTTCTTTTCCTATCAGGTAGCATGATACACAGATATGACGTATCATTTGCTGTCAGACATAGTTAACCATTTTTGAATATAATCTAATTTTTCTCCTCCTACACATTTTGTTCTATTTTTTCCGTCGAAAAATTTACTGATTCTTATTTTTGTTTCCAGAGTCAAAATGTTCTAACCCTTTTGGTCATTTTCACGGAATTCGCTCTGATTGGTTTTGGAAAAATTATAAAAATTTTTTTGTTTGAATTTGTAAATACAAAGAAATTTGTATTATGTTCTTCCGCGTTTTTTTGTTCAACCAGTAAACAAGATATTTTTACGAAATGTTCTGGTTTCGAACTGAAAGTATACTGTAGTTTTTCTCATTCCTCGATATTCTGGGATTTGAGGATTCTGAGATTCCAAAAATTCTCCAATTCTGCTGAATTACATTTCCTGATCATTTTCATTGTTTTCCTATTACTTGATTCCATGACTAATATCCCAAAAATTGGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAATCTTTCAACACACATCTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGGTTAGAACATTTTGACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGAAATCTTTCAACACACATCTCTATCACTCCAGATTTTTAAAACTGCTCATTATCTGAACTGGTGTTTTCTTTTCCTATCAGGTAGCATGATACACAGATATGACGTATCATTTGCTGTCAGACATAGTTAACCATTTTTGAATATAATCTAATTTTTCTCCTCCTACACATTTTGTTCTATTTTTTCCGTCGAAAAATTTACTGATTCTTATTTTTGTTTCCAGAGTCAAAATGTTCTAACCCTTTT</canonical_amplicon>
		<polymorphic_amplicon>AGAAATCTTTCAACACACATCTCTATCACTCCAGATTTTTAAAACTGCTCATTATCTGAACTSGTGTTTTCTTTTCCTATCAGGTAGCATGATACACAGATATGACGTATCATTTGCTGTCAGACATAGTTAACCATTTTTGAATATAATCTAATTTTTCTCCTCCTACACATTTTGTTCTATTTTTTCCGTCGAAAAATTTACTGATTCTTATTTTTGTTTCCAGAGTCAAAATGTTCTAACCCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27761</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>271775</contig_pos>
        <strand>+</strand>
        <context>AAATGAATCG[A/T]TTTCCARACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAATTTTTGTCAGATTCTCTTTTCCAGTCAACCAAATTGAAAATGAATCG</left_flank>
        <right_flank>TTTCCAAACGAATTGTTGACTGAAAATTCACCAAATTTCAATTTTACAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGGATCCTCAACTTCTTTGGGAAAAATTCAAAACTTCAATGAGTGAACTTTGTCTTCCGGGGATGTGGTGAAGAAGAAGCAAAAGCGAGAGCATATGAAGATGTTTGAGAGAAGTTAAGTAGGTATTCTGAGTGAAGATTCACCGGGAATCAAAAATAATGGAAGCCAGTCGGCGGAATAATCATCCAAAATGGCATAGATTTTCAGGGAGGAGCATTTGAATTTTATTTCTTCTGGTGGCATACATGTGATCTGAGAAAAATCCGAAGAAATTGAGTTTCAAAAAAAAATCCAAAAATACAGTACACTTACTCCATGCAAATCCACAGTATACGTCTCGATTACACCTCTTTTGAAAATTTGAGCAATAATTTTTGAAAATTTTCGTATCGGTTTTCCTTCTTAATTTCACTCAATTCTTCAACGATTTCTCCATTCCATCCTCTATCAATTTTTGTCAGATTCTCTTTTCCAGTCAACCAAATTGAAAATGAATCGATTTCCAAACGAATTGTTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCACATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATAGCATTCAAAAAAAAGTTTTTAAAAAAACCTTTTAGTTCAGAAATACCGAGATTTCCAGAATATCCCAACATTCCCTGACTTTTAAGTTTTTCGAAATTTCTTAATGTTTCCTAAAATTTCATAATGTTTCACTTTCTTTTTTCTTTCGCTCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGA</canonical>
            <polymorphic>GGGGATCCTCAACTTCTTTGGGAAAAATTCAAAACTTCAATGAGTGAACTTTGTCTTCCGGGGATGTGGTGAAGAAGAAGCAAAAGCGAGAGCATATGAAGATGTTTGAGAGAAGTTAAGTAGGTATTCTGAGTGAAGATTCACCGGGAATCAAAAATAATGGAAGCCAGTCGGCGGAATAATCATCCAAAATGGCATAGATTTTCAGGGAGGAGCATTTGAATTTTATTTCTTCTGGTGGCATACATGTGATCTGAGAAAAATCCGAAGAAATTGAGTTTCAAAAAAAAATCCAAAAATACAGTACACTTACTCCATGCAAATCCACAGTATACGTCTCGATTACACCTCTTTTGAAAATTTGAGCAATAATTTTTGAAAATTTTCGTATCGGTTTTCCTTCTTAATTTCACTCAATTCTTCAACGATTTCTCCATTCCATCCTCTATCAATTTTTGTCAGATTCTCTTTTCCAGTCAACCAAATTGAAAATGAATCGWTTTCCAAACGAATTGTTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCACATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATAGCATTCAAAAAAAAGTTTTTAAAAAAACCTTTTAGTTCAGAAATACCGAGATTTCCAGAATATCCCAACATTCCCTGACTTTTAAGTTTTTCGAAATTTCTTAATGTTTCCTAAAATTTCATAATGTTTCACTTTCTTTTTTCTTTCGCTCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>340 221 158 152 108 11 10</canonical_bands>
                <polymorphic_bands>340 310 221 108 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATACGTCTCGATTACACCTCTT</pcr_primer_p1>
		<pcr_primer_p2>AGAAGCGAAGGTTAGCTTTATAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATACGTCTCGATTACACCTCTTTTGAAAATTTGAGCAATAATTTTTGAAAATTTTCGTATCGGTTTTCCTTCTTAATTTCACTCAATTCTTCAACGATTTCTCCATTCCATCCTCTATCAATTTTTGTCAGATTCTCTTTTCCAGTCAACCAAATTGAAAATGAATCGATTTCCAAACGAATTGTTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCT</canonical_amplicon>
		<polymorphic_amplicon>TATACGTCTCGATTACACCTCTTTTGAAAATTTGAGCAATAATTTTTGAAAATTTTCGTATCGGTTTTCCTTCTTAATTTCACTCAATTCTTCAACGATTTCTCCATTCCATCCTCTATCAATTTTTGTCAGATTCTCTTTTCCAGTCAACCAAATTGAAAATGAATCGWTTTCCAAACGAATTGTTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27762</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>271782</contig_pos>
        <strand>+</strand>
        <context>TCGWTTTCCA[A/G]ACGAATTGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTCAGATTCTCTTTTCCAGTCAACCAAATTGAAAATGAATCGATTTCCA</left_flank>
        <right_flank>ACGAATTGTTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAACTTCTTTGGGAAAAATTCAAAACTTCAATGAGTGAACTTTGTCTTCCGGGGATGTGGTGAAGAAGAAGCAAAAGCGAGAGCATATGAAGATGTTTGAGAGAAGTTAAGTAGGTATTCTGAGTGAAGATTCACCGGGAATCAAAAATAATGGAAGCCAGTCGGCGGAATAATCATCCAAAATGGCATAGATTTTCAGGGAGGAGCATTTGAATTTTATTTCTTCTGGTGGCATACATGTGATCTGAGAAAAATCCGAAGAAATTGAGTTTCAAAAAAAAATCCAAAAATACAGTACACTTACTCCATGCAAATCCACAGTATACGTCTCGATTACACCTCTTTTGAAAATTTGAGCAATAATTTTTGAAAATTTTCGTATCGGTTTTCCTTCTTAATTTCACTCAATTCTTCAACGATTTCTCCATTCCATCCTCTATCAATTTTTGTCAGATTCTCTTTTCCAGTCAACCAAATTGAAAATGAATCGATTTCCAAACGAATTGTTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCACATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATAGCATTCAAAAAAAAGTTTTTAAAAAAACCTTTTAGTTCAGAAATACCGAGATTTCCAGAATATCCCAACATTCCCTGACTTTTAAGTTTTTCGAAATTTCTTAATGTTTCCTAAAATTTCATAATGTTTCACTTTCTTTTTTCTTTCGCTCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTC</canonical>
            <polymorphic>CTCAACTTCTTTGGGAAAAATTCAAAACTTCAATGAGTGAACTTTGTCTTCCGGGGATGTGGTGAAGAAGAAGCAAAAGCGAGAGCATATGAAGATGTTTGAGAGAAGTTAAGTAGGTATTCTGAGTGAAGATTCACCGGGAATCAAAAATAATGGAAGCCAGTCGGCGGAATAATCATCCAAAATGGCATAGATTTTCAGGGAGGAGCATTTGAATTTTATTTCTTCTGGTGGCATACATGTGATCTGAGAAAAATCCGAAGAAATTGAGTTTCAAAAAAAAATCCAAAAATACAGTACACTTACTCCATGCAAATCCACAGTATACGTCTCGATTACACCTCTTTTGAAAATTTGAGCAATAATTTTTGAAAATTTTCGTATCGGTTTTCCTTCTTAATTTCACTCAATTCTTCAACGATTTCTCCATTCCATCCTCTATCAATTTTTGTCAGATTCTCTTTTCCAGTCAACCAAATTGAAAATGAATCGATTTCCARACGAATTGTTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCACATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATAGCATTCAAAAAAAAGTTTTTAAAAAAACCTTTTAGTTCAGAAATACCGAGATTTCCAGAATATCCCAACATTCCCTGACTTTTAAGTTTTTCGAAATTTCTTAATGTTTCCTAAAATTTCATAATGTTTCACTTTCTTTTTTCTTTCGCTCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATACGTCTCGATTACACCTCTT</pcr_primer_p1>
		<pcr_primer_p2>AGAAGCGAAGGTTAGCTTTATAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATACGTCTCGATTACACCTCTTTTGAAAATTTGAGCAATAATTTTTGAAAATTTTCGTATCGGTTTTCCTTCTTAATTTCACTCAATTCTTCAACGATTTCTCCATTCCATCCTCTATCAATTTTTGTCAGATTCTCTTTTCCAGTCAACCAAATTGAAAATGAATCGATTTCCAAACGAATTGTTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCT</canonical_amplicon>
		<polymorphic_amplicon>TATACGTCTCGATTACACCTCTTTTGAAAATTTGAGCAATAATTTTTGAAAATTTTCGTATCGGTTTTCCTTCTTAATTTCACTCAATTCTTCAACGATTTCTCCATTCCATCCTCTATCAATTTTTGTCAGATTCTCTTTTCCAGTCAACCAAATTGAAAATGAATCGATTTCCARACGAATTGTTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27763</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>271864</contig_pos>
        <strand>+</strand>
        <context>CTGACATATC[A/C]CWTTCTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATC</left_flank>
        <right_flank>CATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGCATATGAAGATGTTTGAGAGAAGTTAAGTAGGTATTCTGAGTGAAGATTCACCGGGAATCAAAAATAATGGAAGCCAGTCGGCGGAATAATCATCCAAAATGGCATAGATTTTCAGGGAGGAGCATTTGAATTTTATTTCTTCTGGTGGCATACATGTGATCTGAGAAAAATCCGAAGAAATTGAGTTTCAAAAAAAAATCCAAAAATACAGTACACTTACTCCATGCAAATCCACAGTATACGTCTCGATTACACCTCTTTTGAAAATTTGAGCAATAATTTTTGAAAATTTTCGTATCGGTTTTCCTTCTTAATTTCACTCAATTCTTCAACGATTTCTCCATTCCATCCTCTATCAATTTTTGTCAGATTCTCTTTTCCAGTCAACCAAATTGAAAATGAATCGATTTCCAAACGAATTGTTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCACATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATAGCATTCAAAAAAAAGTTTTTAAAAAAACCTTTTAGTTCAGAAATACCGAGATTTCCAGAATATCCCAACATTCCCTGACTTTTAAGTTTTTCGAAATTTCTTAATGTTTCCTAAAATTTCATAATGTTTCACTTTCTTTTTTCTTTCGCTCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTCTCTAACATGTAAGTCTAACTAGTAAGAACTTTGTGCAGTTTGATTTTCTACAGTAGTCTAAATTTCAAATTATCATAAAATT</canonical>
            <polymorphic>GAGCATATGAAGATGTTTGAGAGAAGTTAAGTAGGTATTCTGAGTGAAGATTCACCGGGAATCAAAAATAATGGAAGCCAGTCGGCGGAATAATCATCCAAAATGGCATAGATTTTCAGGGAGGAGCATTTGAATTTTATTTCTTCTGGTGGCATACATGTGATCTGAGAAAAATCCGAAGAAATTGAGTTTCAAAAAAAAATCCAAAAATACAGTACACTTACTCCATGCAAATCCACAGTATACGTCTCGATTACACCTCTTTTGAAAATTTGAGCAATAATTTTTGAAAATTTTCGTATCGGTTTTCCTTCTTAATTTCACTCAATTCTTCAACGATTTCTCCATTCCATCCTCTATCAATTTTTGTCAGATTCTCTTTTCCAGTCAACCAAATTGAAAATGAATCGATTTCCAAACGAATTGTTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCMCATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATAGCATTCAAAAAAAAGTTTTTAAAAAAACCTTTTAGTTCAGAAATACCGAGATTTCCAGAATATCCCAACATTCCCTGACTTTTAAGTTTTTCGAAATTTCTTAATGTTTCCTAAAATTTCATAATGTTTCACTTTCTTTTTTCTTTCGCTCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTCTCTAACATGTAAGTCTAACTAGTAAGAACTTTGTGCAGTTTGATTTTCTACAGTAGTCTAAATTTCAAATTATCATAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>170 118 111 97 84 65 59 57 52 47 46 34 20 19 11 8 2</canonical_bands>
                <polymorphic_bands>170 118 111 111 97 84 65 57 47 46 34 20 19 11 8 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTTCCTTCTTAATTTCACTC</pcr_primer_p1>
		<pcr_primer_p2>GTGGATTCTACGAAATTTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTTTTCCTTCTTAATTTCACTCAATTCTTCAACGATTTCTCCATTCCATCCTCTATCAATTTTTGTCAGATTCTCTTTTCCAGTCAACCAAATTGAAAATGAATCGATTTCCAAACGAATTGTTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCACATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCAC</canonical_amplicon>
		<polymorphic_amplicon>GGTTTTCCTTCTTAATTTCACTCAATTCTTCAACGATTTCTCCATTCCATCCTCTATCAATTTTTGTCAGATTCTCTTTTCCAGTCAACCAAATTGAAAATGAATCGATTTCCAAACGAATTGTTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCMCATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27764</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>271866</contig_pos>
        <strand>+</strand>
        <context>GACATATCMC[A/T]TTCTTTTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCAC</left_flank>
        <right_flank>TTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATATGAAGATGTTTGAGAGAAGTTAAGTAGGTATTCTGAGTGAAGATTCACCGGGAATCAAAAATAATGGAAGCCAGTCGGCGGAATAATCATCCAAAATGGCATAGATTTTCAGGGAGGAGCATTTGAATTTTATTTCTTCTGGTGGCATACATGTGATCTGAGAAAAATCCGAAGAAATTGAGTTTCAAAAAAAAATCCAAAAATACAGTACACTTACTCCATGCAAATCCACAGTATACGTCTCGATTACACCTCTTTTGAAAATTTGAGCAATAATTTTTGAAAATTTTCGTATCGGTTTTCCTTCTTAATTTCACTCAATTCTTCAACGATTTCTCCATTCCATCCTCTATCAATTTTTGTCAGATTCTCTTTTCCAGTCAACCAAATTGAAAATGAATCGATTTCCAAACGAATTGTTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCACATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATAGCATTCAAAAAAAAGTTTTTAAAAAAACCTTTTAGTTCAGAAATACCGAGATTTCCAGAATATCCCAACATTCCCTGACTTTTAAGTTTTTCGAAATTTCTTAATGTTTCCTAAAATTTCATAATGTTTCACTTTCTTTTTTCTTTCGCTCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTCTCTAACATGTAAGTCTAACTAGTAAGAACTTTGTGCAGTTTGATTTTCTACAGTAGTCTAAATTTCAAATTATCATAAAATTTT</canonical>
            <polymorphic>GCATATGAAGATGTTTGAGAGAAGTTAAGTAGGTATTCTGAGTGAAGATTCACCGGGAATCAAAAATAATGGAAGCCAGTCGGCGGAATAATCATCCAAAATGGCATAGATTTTCAGGGAGGAGCATTTGAATTTTATTTCTTCTGGTGGCATACATGTGATCTGAGAAAAATCCGAAGAAATTGAGTTTCAAAAAAAAATCCAAAAATACAGTACACTTACTCCATGCAAATCCACAGTATACGTCTCGATTACACCTCTTTTGAAAATTTGAGCAATAATTTTTGAAAATTTTCGTATCGGTTTTCCTTCTTAATTTCACTCAATTCTTCAACGATTTCTCCATTCCATCCTCTATCAATTTTTGTCAGATTCTCTTTTCCAGTCAACCAAATTGAAAATGAATCGATTTCCAAACGAATTGTTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCACWTTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATAGCATTCAAAAAAAAGTTTTTAAAAAAACCTTTTAGTTCAGAAATACCGAGATTTCCAGAATATCCCAACATTCCCTGACTTTTAAGTTTTTCGAAATTTCTTAATGTTTCCTAAAATTTCATAATGTTTCACTTTCTTTTTTCTTTCGCTCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTCTCTAACATGTAAGTCTAACTAGTAAGAACTTTGTGCAGTTTGATTTTCTACAGTAGTCTAAATTTCAAATTATCATAAAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCACCAAATTTCAATTTTACA</pcr_primer_p1>
		<pcr_primer_p2>AAGCAAAAAGTTGTGGATTTATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCACATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTT</canonical_amplicon>
		<polymorphic_amplicon>ATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCACWTTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27765</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>271966</contig_pos>
        <strand>+</strand>
        <context>ATCTGAAAAT[C/G]CGCTCTATTG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAAT</left_flank>
        <right_flank>CGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGCATAGATTTTCAGGGAGGAGCATTTGAATTTTATTTCTTCTGGTGGCATACATGTGATCTGAGAAAAATCCGAAGAAATTGAGTTTCAAAAAAAAATCCAAAAATACAGTACACTTACTCCATGCAAATCCACAGTATACGTCTCGATTACACCTCTTTTGAAAATTTGAGCAATAATTTTTGAAAATTTTCGTATCGGTTTTCCTTCTTAATTTCACTCAATTCTTCAACGATTTCTCCATTCCATCCTCTATCAATTTTTGTCAGATTCTCTTTTCCAGTCAACCAAATTGAAAATGAATCGATTTCCAAACGAATTGTTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCACATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATAGCATTCAAAAAAAAGTTTTTAAAAAAACCTTTTAGTTCAGAAATACCGAGATTTCCAGAATATCCCAACATTCCCTGACTTTTAAGTTTTTCGAAATTTCTTAATGTTTCCTAAAATTTCATAATGTTTCACTTTCTTTTTTCTTTCGCTCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTCTCTAACATGTAAGTCTAACTAGTAAGAACTTTGTGCAGTTTGATTTTCTACAGTAGTCTAAATTTCAAATTATCATAAAATTTTCAGAGACGTTTCGAGACAATGAAGACAATATAAATTTTAAAACCACACATTTATTGAACTCAAATTAAGAACAATATTACCAGTCACAATGAAACCACAG</canonical>
            <polymorphic>ATGGCATAGATTTTCAGGGAGGAGCATTTGAATTTTATTTCTTCTGGTGGCATACATGTGATCTGAGAAAAATCCGAAGAAATTGAGTTTCAAAAAAAAATCCAAAAATACAGTACACTTACTCCATGCAAATCCACAGTATACGTCTCGATTACACCTCTTTTGAAAATTTGAGCAATAATTTTTGAAAATTTTCGTATCGGTTTTCCTTCTTAATTTCACTCAATTCTTCAACGATTTCTCCATTCCATCCTCTATCAATTTTTGTCAGATTCTCTTTTCCAGTCAACCAAATTGAAAATGAATCGATTTCCAAACGAATTGTTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCACATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATSCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATAGCATTCAAAAAAAAGTTTTTAAAAAAACCTTTTAGTTCAGAAATACCGAGATTTCCAGAATATCCCAACATTCCCTGACTTTTAAGTTTTTCGAAATTTCTTAATGTTTCCTAAAATTTCATAATGTTTCACTTTCTTTTTTCTTTCGCTCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTCTCTAACATGTAAGTCTAACTAGTAAGAACTTTGTGCAGTTTGATTTTCTACAGTAGTCTAAATTTCAAATTATCATAAAATTTTCAGAGACGTTTCGAGACAATGAAGACAATATAAATTTTAAAACCACACATTTATTGAACTCAAATTAAGAACAATATTACCAGTCACAATGAAACCACAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCACCAAATTTCAATTTTACA</pcr_primer_p1>
		<pcr_primer_p2>AAGCAAAAAGTTGTGGATTTATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCACATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTT</canonical_amplicon>
		<polymorphic_amplicon>ATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCACATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATSCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27766</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>271977</contig_pos>
        <strand>+</strand>
        <context>CGCTCTATTG[C/T]AAAAAAAAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTG</left_flank>
        <right_flank>AAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAGGGAGGAGCATTTGAATTTTATTTCTTCTGGTGGCATACATGTGATCTGAGAAAAATCCGAAGAAATTGAGTTTCAAAAAAAAATCCAAAAATACAGTACACTTACTCCATGCAAATCCACAGTATACGTCTCGATTACACCTCTTTTGAAAATTTGAGCAATAATTTTTGAAAATTTTCGTATCGGTTTTCCTTCTTAATTTCACTCAATTCTTCAACGATTTCTCCATTCCATCCTCTATCAATTTTTGTCAGATTCTCTTTTCCAGTCAACCAAATTGAAAATGAATCGATTTCCAAACGAATTGTTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCACATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATAGCATTCAAAAAAAAGTTTTTAAAAAAACCTTTTAGTTCAGAAATACCGAGATTTCCAGAATATCCCAACATTCCCTGACTTTTAAGTTTTTCGAAATTTCTTAATGTTTCCTAAAATTTCATAATGTTTCACTTTCTTTTTTCTTTCGCTCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTCTCTAACATGTAAGTCTAACTAGTAAGAACTTTGTGCAGTTTGATTTTCTACAGTAGTCTAAATTTCAAATTATCATAAAATTTTCAGAGACGTTTCGAGACAATGAAGACAATATAAATTTTAAAACCACACATTTATTGAACTCAAATTAAGAACAATATTACCAGTCACAATGAAACCACAGAGAAACTTGAC</canonical>
            <polymorphic>TTTCAGGGAGGAGCATTTGAATTTTATTTCTTCTGGTGGCATACATGTGATCTGAGAAAAATCCGAAGAAATTGAGTTTCAAAAAAAAATCCAAAAATACAGTACACTTACTCCATGCAAATCCACAGTATACGTCTCGATTACACCTCTTTTGAAAATTTGAGCAATAATTTTTGAAAATTTTCGTATCGGTTTTCCTTCTTAATTTCACTCAATTCTTCAACGATTTCTCCATTCCATCCTCTATCAATTTTTGTCAGATTCTCTTTTCCAGTCAACCAAATTGAAAATGAATCGATTTCCAAACGAATTGTTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCACATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGYAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATAGCATTCAAAAAAAAGTTTTTAAAAAAACCTTTTAGTTCAGAAATACCGAGATTTCCAGAATATCCCAACATTCCCTGACTTTTAAGTTTTTCGAAATTTCTTAATGTTTCCTAAAATTTCATAATGTTTCACTTTCTTTTTTCTTTCGCTCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTCTCTAACATGTAAGTCTAACTAGTAAGAACTTTGTGCAGTTTGATTTTCTACAGTAGTCTAAATTTCAAATTATCATAAAATTTTCAGAGACGTTTCGAGACAATGAAGACAATATAAATTTTAAAACCACACATTTATTGAACTCAAATTAAGAACAATATTACCAGTCACAATGAAACCACAGAGAAACTTGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCACCAAATTTCAATTTTACA</pcr_primer_p1>
		<pcr_primer_p2>AAGCAAAAAGTTGTGGATTTATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCACATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTT</canonical_amplicon>
		<polymorphic_amplicon>ATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCACATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGYAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27767</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>272006</contig_pos>
        <strand></strand>
        <context>GAGCACACTT[T/G]CTTACCTGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTT</left_flank>
        <right_flank>CTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTTCAAACGG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCTGGTGGCATACATGTGATCTGAGAAAAATCCGAAGAAATTGAGTTTCAAAAAAAAATCCAAAAATACAGTACACTTACTCCATGCAAATCCACAGTATACGTCTCGATTACACCTCTTTTGAAAATTTGAGCAATAATTTTTGAAAATTTTCGTATCGGTTTTCCTTCTTAATTTCACTCAATTCTTCAACGATTTCTCCATTCCATCCTCTATCAATTTTTGTCAGATTCTCTTTTCCAGTCAACCAAATTGAAAATGAATCGATTTCCAAACGAATTGTTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCACATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATAGCATTCAAAAAAAAGTTTTTAAAAAAACCTTTTAGTTCAGAAATACCGAGATTTCCAGAATATCCCAACATTCCCTGACTTTTAAGTTTTTCGAAATTTCTTAATGTTTCCTAAAATTTCATAATGTTTCACTTTCTTTTTTCTTTCGCTCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTCTCTAACATGTAAGTCTAACTAGTAAGAACTTTGTGCAGTTTGATTTTCTACAGTAGTCTAAATTTCAAATTATCATAAAATTTTCAGAGACGTTTCGAGACAATGAAGACAATATAAATTTTAAAACCACACATTTATTGAACTCAAATTAAGAACAATATTACCAGTCACAATGAAACCACAGAGAAACTTGACAATACACAGGTTTTAAAATTTCTGCGAAA</canonical>
            <polymorphic>CTTCTGGTGGCATACATGTGATCTGAGAAAAATCCGAAGAAATTGAGTTTCAAAAAAAAATCCAAAAATACAGTACACTTACTCCATGCAAATCCACAGTATACGTCTCGATTACACCTCTTTTGAAAATTTGAGCAATAATTTTTGAAAATTTTCGTATCGGTTTTCCTTCTTAATTTCACTCAATTCTTCAACGATTTCTCCATTCCATCCTCTATCAATTTTTGTCAGATTCTCTTTTCCAGTCAACCAAATTGAAAATGAATCGATTTCCAAACGAATTGTTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCACATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTKCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATAGCATTCAAAAAAAAGTTTTTAAAAAAACCTTTTAGTTCAGAAATACCGAGATTTCCAGAATATCCCAACATTCCCTGACTTTTAAGTTTTTCGAAATTTCTTAATGTTTCCTAAAATTTCATAATGTTTCACTTTCTTTTTTCTTTCGCTCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTCTCTAACATGTAAGTCTAACTAGTAAGAACTTTGTGCAGTTTGATTTTCTACAGTAGTCTAAATTTCAAATTATCATAAAATTTTCAGAGACGTTTCGAGACAATGAAGACAATATAAATTTTAAAACCACACATTTATTGAACTCAAATTAAGAACAATATTACCAGTCACAATGAAACCACAGAGAAACTTGACAATACACAGGTTTTAAAATTTCTGCGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATTTTCAGTTTTTCTGGAAC</pcr_primer_p1>
		<pcr_primer_p2>TCTCGGTATTTCTGAACTAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATAGCATTCAAAAAAAAGTTTTTAAAAAAACCTTTTAGTTCAGAAATACCGAGA</canonical_amplicon>
		<polymorphic_amplicon>GAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTKCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATAGCATTCAAAAAAAAGTTTTTAAAAAAACCTTTTAGTTCAGAAATACCGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27768</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>272018</contig_pos>
        <strand></strand>
        <context>TTACCTGGAC[C/T]CATAATMCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGAC</left_flank>
        <right_flank>CATAATCCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACATGTGATCTGAGAAAAATCCGAAGAAATTGAGTTTCAAAAAAAAATCCAAAAATACAGTACACTTACTCCATGCAAATCCACAGTATACGTCTCGATTACACCTCTTTTGAAAATTTGAGCAATAATTTTTGAAAATTTTCGTATCGGTTTTCCTTCTTAATTTCACTCAATTCTTCAACGATTTCTCCATTCCATCCTCTATCAATTTTTGTCAGATTCTCTTTTCCAGTCAACCAAATTGAAAATGAATCGATTTCCAAACGAATTGTTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCACATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATAGCATTCAAAAAAAAGTTTTTAAAAAAACCTTTTAGTTCAGAAATACCGAGATTTCCAGAATATCCCAACATTCCCTGACTTTTAAGTTTTTCGAAATTTCTTAATGTTTCCTAAAATTTCATAATGTTTCACTTTCTTTTTTCTTTCGCTCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTCTCTAACATGTAAGTCTAACTAGTAAGAACTTTGTGCAGTTTGATTTTCTACAGTAGTCTAAATTTCAAATTATCATAAAATTTTCAGAGACGTTTCGAGACAATGAAGACAATATAAATTTTAAAACCACACATTTATTGAACTCAAATTAAGAACAATATTACCAGTCACAATGAAACCACAGAGAAACTTGACAATACACAGGTTTTAAAATTTCTGCGAAACCCGCAAAACAA</canonical>
            <polymorphic>TACATGTGATCTGAGAAAAATCCGAAGAAATTGAGTTTCAAAAAAAAATCCAAAAATACAGTACACTTACTCCATGCAAATCCACAGTATACGTCTCGATTACACCTCTTTTGAAAATTTGAGCAATAATTTTTGAAAATTTTCGTATCGGTTTTCCTTCTTAATTTCACTCAATTCTTCAACGATTTCTCCATTCCATCCTCTATCAATTTTTGTCAGATTCTCTTTTCCAGTCAACCAAATTGAAAATGAATCGATTTCCAAACGAATTGTTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCACATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACYCATAATCCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATAGCATTCAAAAAAAAGTTTTTAAAAAAACCTTTTAGTTCAGAAATACCGAGATTTCCAGAATATCCCAACATTCCCTGACTTTTAAGTTTTTCGAAATTTCTTAATGTTTCCTAAAATTTCATAATGTTTCACTTTCTTTTTTCTTTCGCTCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTCTCTAACATGTAAGTCTAACTAGTAAGAACTTTGTGCAGTTTGATTTTCTACAGTAGTCTAAATTTCAAATTATCATAAAATTTTCAGAGACGTTTCGAGACAATGAAGACAATATAAATTTTAAAACCACACATTTATTGAACTCAAATTAAGAACAATATTACCAGTCACAATGAAACCACAGAGAAACTTGACAATACACAGGTTTTAAAATTTCTGCGAAACCCGCAAAACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATTTTCAGTTTTTCTGGAAC</pcr_primer_p1>
		<pcr_primer_p2>TCTCGGTATTTCTGAACTAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATAGCATTCAAAAAAAAGTTTTTAAAAAAACCTTTTAGTTCAGAAATACCGAGA</canonical_amplicon>
		<polymorphic_amplicon>GAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACYCATAATCCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATAGCATTCAAAAAAAAGTTTTTAAAAAAACCTTTTAGTTCAGAAATACCGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27769</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>272025</contig_pos>
        <strand>+</strand>
        <context>GACYCATAAT[A/C]CAATAAATCC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAAT</left_flank>
        <right_flank>CAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCTGAGAAAAATCCGAAGAAATTGAGTTTCAAAAAAAAATCCAAAAATACAGTACACTTACTCCATGCAAATCCACAGTATACGTCTCGATTACACCTCTTTTGAAAATTTGAGCAATAATTTTTGAAAATTTTCGTATCGGTTTTCCTTCTTAATTTCACTCAATTCTTCAACGATTTCTCCATTCCATCCTCTATCAATTTTTGTCAGATTCTCTTTTCCAGTCAACCAAATTGAAAATGAATCGATTTCCAAACGAATTGTTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCACATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATAGCATTCAAAAAAAAGTTTTTAAAAAAACCTTTTAGTTCAGAAATACCGAGATTTCCAGAATATCCCAACATTCCCTGACTTTTAAGTTTTTCGAAATTTCTTAATGTTTCCTAAAATTTCATAATGTTTCACTTTCTTTTTTCTTTCGCTCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTCTCTAACATGTAAGTCTAACTAGTAAGAACTTTGTGCAGTTTGATTTTCTACAGTAGTCTAAATTTCAAATTATCATAAAATTTTCAGAGACGTTTCGAGACAATGAAGACAATATAAATTTTAAAACCACACATTTATTGAACTCAAATTAAGAACAATATTACCAGTCACAATGAAACCACAGAGAAACTTGACAATACACAGGTTTTAAAATTTCTGCGAAACCCGCAAAACAAAGGAAAC</canonical>
            <polymorphic>GATCTGAGAAAAATCCGAAGAAATTGAGTTTCAAAAAAAAATCCAAAAATACAGTACACTTACTCCATGCAAATCCACAGTATACGTCTCGATTACACCTCTTTTGAAAATTTGAGCAATAATTTTTGAAAATTTTCGTATCGGTTTTCCTTCTTAATTTCACTCAATTCTTCAACGATTTCTCCATTCCATCCTCTATCAATTTTTGTCAGATTCTCTTTTCCAGTCAACCAAATTGAAAATGAATCGATTTCCAAACGAATTGTTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCACATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATMCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATAGCATTCAAAAAAAAGTTTTTAAAAAAACCTTTTAGTTCAGAAATACCGAGATTTCCAGAATATCCCAACATTCCCTGACTTTTAAGTTTTTCGAAATTTCTTAATGTTTCCTAAAATTTCATAATGTTTCACTTTCTTTTTTCTTTCGCTCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTCTCTAACATGTAAGTCTAACTAGTAAGAACTTTGTGCAGTTTGATTTTCTACAGTAGTCTAAATTTCAAATTATCATAAAATTTTCAGAGACGTTTCGAGACAATGAAGACAATATAAATTTTAAAACCACACATTTATTGAACTCAAATTAAGAACAATATTACCAGTCACAATGAAACCACAGAGAAACTTGACAATACACAGGTTTTAAAATTTCTGCGAAACCCGCAAAACAAAGGAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATTTTCAGTTTTTCTGGAAC</pcr_primer_p1>
		<pcr_primer_p2>TCTCGGTATTTCTGAACTAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATAGCATTCAAAAAAAAGTTTTTAAAAAAACCTTTTAGTTCAGAAATACCGAGA</canonical_amplicon>
		<polymorphic_amplicon>GAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATMCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATAGCATTCAAAAAAAAGTTTTTAAAAAAACCTTTTAGTTCAGAAATACCGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27770</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>272152</contig_pos>
        <strand>+</strand>
        <context>AACATTCCCT[A/G]ACTTTTAAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCTTTTAGTTCAGAAATACCGAGATTTCCAGAATATCCCAACATTCCCT</left_flank>
        <right_flank>ACTTTTAAGTTTTTCGAAATTTCTTAATGTTTCCTAAAATTTCATAATGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAATTTTCGTATCGGTTTTCCTTCTTAATTTCACTCAATTCTTCAACGATTTCTCCATTCCATCCTCTATCAATTTTTGTCAGATTCTCTTTTCCAGTCAACCAAATTGAAAATGAATCGATTTCCAAACGAATTGTTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCACATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATAGCATTCAAAAAAAAGTTTTTAAAAAAACCTTTTAGTTCAGAAATACCGAGATTTCCAGAATATCCCAACATTCCCTGACTTTTAAGTTTTTCGAAATTTCTTAATGTTTCCTAAAATTTCATAATGTTTCACTTTCTTTTTTCTTTCGCTCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTCTCTAACATGTAAGTCTAACTAGTAAGAACTTTGTGCAGTTTGATTTTCTACAGTAGTCTAAATTTCAAATTATCATAAAATTTTCAGAGACGTTTCGAGACAATGAAGACAATATAAATTTTAAAACCACACATTTATTGAACTCAAATTAAGAACAATATTACCAGTCACAATGAAACCACAGAGAAACTTGACAATACACAGGTTTTAAAATTTCTGCGAAACCCGCAAAACAAAGGAAACTCTTTCAAAATCACAAATTCTTAATATAGCAGCACGATGGGAATCCATTGCATTCGCAGTCGACCTTGAATGAAAATTTTGGATCAGACCATGGACCGATTCTCTTGATAGCCTTGCCCAGTTGCTC</canonical>
            <polymorphic>GAAAATTTTCGTATCGGTTTTCCTTCTTAATTTCACTCAATTCTTCAACGATTTCTCCATTCCATCCTCTATCAATTTTTGTCAGATTCTCTTTTCCAGTCAACCAAATTGAAAATGAATCGATTTCCAAACGAATTGTTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCACATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATAGCATTCAAAAAAAAGTTTTTAAAAAAACCTTTTAGTTCAGAAATACCGAGATTTCCAGAATATCCCAACATTCCCTRACTTTTAAGTTTTTCGAAATTTCTTAATGTTTCCTAAAATTTCATAATGTTTCACTTTCTTTTTTCTTTCGCTCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTCTCTAACATGTAAGTCTAACTAGTAAGAACTTTGTGCAGTTTGATTTTCTACAGTAGTCTAAATTTCAAATTATCATAAAATTTTCAGAGACGTTTCGAGACAATGAAGACAATATAAATTTTAAAACCACACATTTATTGAACTCAAATTAAGAACAATATTACCAGTCACAATGAAACCACAGAGAAACTTGACAATACACAGGTTTTAAAATTTCTGCGAAACCCGCAAAACAAAGGAAACTCTTTCAAAATCACAAATTCTTAATATAGCAGCACGATGGGAATCCATTGCATTCGCAGTCGACCTTGAATGAAAATTTTGGATCAGACCATGGACCGATTCTCTTGATAGCCTTGCCCAGTTGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACCTTTTAGTTCAGAAATACC</pcr_primer_p1>
		<pcr_primer_p2>AGACTACTGTAGAAAATCAAACTGC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAAACCTTTTAGTTCAGAAATACCGAGATTTCCAGAATATCCCAACATTCCCTGACTTTTAAGTTTTTCGAAATTTCTTAATGTTTCCTAAAATTTCATAATGTTTCACTTTCTTTTTTCTTTCGCTCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTCTCTAACATGTAAGTCTAACTAGTAAGAACTTTGTGCAGTTTGATTTTCTACAGTAGTCT</canonical_amplicon>
		<polymorphic_amplicon>AAAACCTTTTAGTTCAGAAATACCGAGATTTCCAGAATATCCCAACATTCCCTRACTTTTAAGTTTTTCGAAATTTCTTAATGTTTCCTAAAATTTCATAATGTTTCACTTTCTTTTTTCTTTCGCTCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTCTCTAACATGTAAGTCTAACTAGTAAGAACTTTGTGCAGTTTGATTTTCTACAGTAGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27771</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>272168</contig_pos>
        <strand>+</strand>
        <context>TAAGTTTTTC[A/G]AAATTTCTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATACCGAGATTTCCAGAATATCCCAACATTCCCTGACTTTTAAGTTTTTC</left_flank>
        <right_flank>AAATTTCTTAATGTTTCCTAAAATTTCATAATGTTTCACTTTCTTTTTTC</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTCCTTCTTAATTTCACTCAATTCTTCAACGATTTCTCCATTCCATCCTCTATCAATTTTTGTCAGATTCTCTTTTCCAGTCAACCAAATTGAAAATGAATCGATTTCCAAACGAATTGTTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCACATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATAGCATTCAAAAAAAAGTTTTTAAAAAAACCTTTTAGTTCAGAAATACCGAGATTTCCAGAATATCCCAACATTCCCTGACTTTTAAGTTTTTCGAAATTTCTTAATGTTTCCTAAAATTTCATAATGTTTCACTTTCTTTTTTCTTTCGCTCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTCTCTAACATGTAAGTCTAACTAGTAAGAACTTTGTGCAGTTTGATTTTCTACAGTAGTCTAAATTTCAAATTATCATAAAATTTTCAGAGACGTTTCGAGACAATGAAGACAATATAAATTTTAAAACCACACATTTATTGAACTCAAATTAAGAACAATATTACCAGTCACAATGAAACCACAGAGAAACTTGACAATACACAGGTTTTAAAATTTCTGCGAAACCCGCAAAACAAAGGAAACTCTTTCAAAATCACAAATTCTTAATATAGCAGCACGATGGGAATCCATTGCATTCGCAGTCGACCTTGAATGAAAATTTTGGATCAGACCATGGACCGATTCTCTTGATAGCCTTGCCCAGTTGCTCTCCACCAACGATGACG</canonical>
            <polymorphic>GTTTTCCTTCTTAATTTCACTCAATTCTTCAACGATTTCTCCATTCCATCCTCTATCAATTTTTGTCAGATTCTCTTTTCCAGTCAACCAAATTGAAAATGAATCGATTTCCAAACGAATTGTTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCACATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATAGCATTCAAAAAAAAGTTTTTAAAAAAACCTTTTAGTTCAGAAATACCGAGATTTCCAGAATATCCCAACATTCCCTGACTTTTAAGTTTTTCRAAATTTCTTAATGTTTCCTAAAATTTCATAATGTTTCACTTTCTTTTTTCTTTCGCTCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTCTCTAACATGTAAGTCTAACTAGTAAGAACTTTGTGCAGTTTGATTTTCTACAGTAGTCTAAATTTCAAATTATCATAAAATTTTCAGAGACGTTTCGAGACAATGAAGACAATATAAATTTTAAAACCACACATTTATTGAACTCAAATTAAGAACAATATTACCAGTCACAATGAAACCACAGAGAAACTTGACAATACACAGGTTTTAAAATTTCTGCGAAACCCGCAAAACAAAGGAAACTCTTTCAAAATCACAAATTCTTAATATAGCAGCACGATGGGAATCCATTGCATTCGCAGTCGACCTTGAATGAAAATTTTGGATCAGACCATGGACCGATTCTCTTGATAGCCTTGCCCAGTTGCTCTCCACCAACGATGACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>221 211 208 152 105 82 11 10</canonical_bands>
                <polymorphic_bands>432 208 152 105 82 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACCTTTTAGTTCAGAAATACC</pcr_primer_p1>
		<pcr_primer_p2>AGACTACTGTAGAAAATCAAACTGC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAAACCTTTTAGTTCAGAAATACCGAGATTTCCAGAATATCCCAACATTCCCTGACTTTTAAGTTTTTCGAAATTTCTTAATGTTTCCTAAAATTTCATAATGTTTCACTTTCTTTTTTCTTTCGCTCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTCTCTAACATGTAAGTCTAACTAGTAAGAACTTTGTGCAGTTTGATTTTCTACAGTAGTCT</canonical_amplicon>
		<polymorphic_amplicon>AAAACCTTTTAGTTCAGAAATACCGAGATTTCCAGAATATCCCAACATTCCCTGACTTTTAAGTTTTTCRAAATTTCTTAATGTTTCCTAAAATTTCATAATGTTTCACTTTCTTTTTTCTTTCGCTCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTCTCTAACATGTAAGTCTAACTAGTAAGAACTTTGTGCAGTTTGATTTTCTACAGTAGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27772</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>272286</contig_pos>
        <strand>+</strand>
        <context>GAAGCTCTCT[A/T]ACAWGTAAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTCTCT</left_flank>
        <right_flank>ACATGTAAGTCTAACTAGTAAGAACTTTGTGCAGTTTGATTTTCTACAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGTTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCACATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATAGCATTCAAAAAAAAGTTTTTAAAAAAACCTTTTAGTTCAGAAATACCGAGATTTCCAGAATATCCCAACATTCCCTGACTTTTAAGTTTTTCGAAATTTCTTAATGTTTCCTAAAATTTCATAATGTTTCACTTTCTTTTTTCTTTCGCTCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTCTCTAACATGTAAGTCTAACTAGTAAGAACTTTGTGCAGTTTGATTTTCTACAGTAGTCTAAATTTCAAATTATCATAAAATTTTCAGAGACGTTTCGAGACAATGAAGACAATATAAATTTTAAAACCACACATTTATTGAACTCAAATTAAGAACAATATTACCAGTCACAATGAAACCACAGAGAAACTTGACAATACACAGGTTTTAAAATTTCTGCGAAACCCGCAAAACAAAGGAAACTCTTTCAAAATCACAAATTCTTAATATAGCAGCACGATGGGAATCCATTGCATTCGCAGTCGACCTTGAATGAAAATTTTGGATCAGACCATGGACCGATTCTCTTGATAGCCTTGCCCAGTTGCTCTCCACCAACGATGACGCGAATCAGAACGTCTTCGAGGAATTGGCACGCCTTCTTGATCAATTCAATTCGCTCCTTGATCTTCTGGAAAGGGGAAATTTGGAGGATTGAATATTTTGGAATTTGTGGAAATTATA</canonical>
            <polymorphic>ATTGTTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCACATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATAGCATTCAAAAAAAAGTTTTTAAAAAAACCTTTTAGTTCAGAAATACCGAGATTTCCAGAATATCCCAACATTCCCTGACTTTTAAGTTTTTCGAAATTTCTTAATGTTTCCTAAAATTTCATAATGTTTCACTTTCTTTTTTCTTTCGCTCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTCTCTWACATGTAAGTCTAACTAGTAAGAACTTTGTGCAGTTTGATTTTCTACAGTAGTCTAAATTTCAAATTATCATAAAATTTTCAGAGACGTTTCGAGACAATGAAGACAATATAAATTTTAAAACCACACATTTATTGAACTCAAATTAAGAACAATATTACCAGTCACAATGAAACCACAGAGAAACTTGACAATACACAGGTTTTAAAATTTCTGCGAAACCCGCAAAACAAAGGAAACTCTTTCAAAATCACAAATTCTTAATATAGCAGCACGATGGGAATCCATTGCATTCGCAGTCGACCTTGAATGAAAATTTTGGATCAGACCATGGACCGATTCTCTTGATAGCCTTGCCCAGTTGCTCTCCACCAACGATGACGCGAATCAGAACGTCTTCGAGGAATTGGCACGCCTTCTTGATCAATTCAATTCGCTCCTTGATCTTCTGGAAAGGGGAAATTTGGAGGATTGAATATTTTGGAATTTGTGGAAATTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTCCATCATTCATAATTCATA</pcr_primer_p1>
		<pcr_primer_p2>AGTTTCTCTGTGGTTTCATTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTCTCTAACATGTAAGTCTAACTAGTAAGAACTTTGTGCAGTTTGATTTTCTACAGTAGTCTAAATTTCAAATTATCATAAAATTTTCAGAGACGTTTCGAGACAATGAAGACAATATAAATTTTAAAACCACACATTTATTGAACTCAAATTAAGAACAATATTACCAGTCACAATGAAACCACAGAGAAACT</canonical_amplicon>
		<polymorphic_amplicon>TCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTCTCTWACATGTAAGTCTAACTAGTAAGAACTTTGTGCAGTTTGATTTTCTACAGTAGTCTAAATTTCAAATTATCATAAAATTTTCAGAGACGTTTCGAGACAATGAAGACAATATAAATTTTAAAACCACACATTTATTGAACTCAAATTAAGAACAATATTACCAGTCACAATGAAACCACAGAGAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27773</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>272290</contig_pos>
        <strand>+</strand>
        <context>CTCTCTWACA[A/T]GTAAGTCTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTCTCTAACA</left_flank>
        <right_flank>GTAAGTCTAACTAGTAAGAACTTTGTGCAGTTTGATTTTCTACAGTAGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCACATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATAGCATTCAAAAAAAAGTTTTTAAAAAAACCTTTTAGTTCAGAAATACCGAGATTTCCAGAATATCCCAACATTCCCTGACTTTTAAGTTTTTCGAAATTTCTTAATGTTTCCTAAAATTTCATAATGTTTCACTTTCTTTTTTCTTTCGCTCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTCTCTAACATGTAAGTCTAACTAGTAAGAACTTTGTGCAGTTTGATTTTCTACAGTAGTCTAAATTTCAAATTATCATAAAATTTTCAGAGACGTTTCGAGACAATGAAGACAATATAAATTTTAAAACCACACATTTATTGAACTCAAATTAAGAACAATATTACCAGTCACAATGAAACCACAGAGAAACTTGACAATACACAGGTTTTAAAATTTCTGCGAAACCCGCAAAACAAAGGAAACTCTTTCAAAATCACAAATTCTTAATATAGCAGCACGATGGGAATCCATTGCATTCGCAGTCGACCTTGAATGAAAATTTTGGATCAGACCATGGACCGATTCTCTTGATAGCCTTGCCCAGTTGCTCTCCACCAACGATGACGCGAATCAGAACGTCTTCGAGGAATTGGCACGCCTTCTTGATCAATTCAATTCGCTCCTTGATCTTCTGGAAAGGGGAAATTTGGAGGATTGAATATTTTGGAATTTGTGGAAATTATAAAAA</canonical>
            <polymorphic>TTGACTGAAAATTCACCAAATTTCAATTTTACAAAAAAGTATGTATAAAGCTAACCTTCGCTTCTGACATATCACATTCTTTTTCTGAAATTTTCAGTTTTTCTGGAACAAATTTCGTAGAATCCACAACGTCTCGATCGTCTTTCGAGCTAACTCGAAGGTTGCATCTGAAAATGCGCTCTATTGAAAAAAAAAGTTCTCAATGGAGCACACTTTCTTACCTGGACCCATAATCCAATAAATCCACAACTTTTTGCTTCAAACGGGCTGGGATGTTTTGACATAGCATTCAAAAAAAAGTTTTTAAAAAAACCTTTTAGTTCAGAAATACCGAGATTTCCAGAATATCCCAACATTCCCTGACTTTTAAGTTTTTCGAAATTTCTTAATGTTTCCTAAAATTTCATAATGTTTCACTTTCTTTTTTCTTTCGCTCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTCTCTAACAWGTAAGTCTAACTAGTAAGAACTTTGTGCAGTTTGATTTTCTACAGTAGTCTAAATTTCAAATTATCATAAAATTTTCAGAGACGTTTCGAGACAATGAAGACAATATAAATTTTAAAACCACACATTTATTGAACTCAAATTAAGAACAATATTACCAGTCACAATGAAACCACAGAGAAACTTGACAATACACAGGTTTTAAAATTTCTGCGAAACCCGCAAAACAAAGGAAACTCTTTCAAAATCACAAATTCTTAATATAGCAGCACGATGGGAATCCATTGCATTCGCAGTCGACCTTGAATGAAAATTTTGGATCAGACCATGGACCGATTCTCTTGATAGCCTTGCCCAGTTGCTCTCCACCAACGATGACGCGAATCAGAACGTCTTCGAGGAATTGGCACGCCTTCTTGATCAATTCAATTCGCTCCTTGATCTTCTGGAAAGGGGAAATTTGGAGGATTGAATATTTTGGAATTTGTGGAAATTATAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>498 327 175</canonical_bands>
                <polymorphic_bands>825 175</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTCCATCATTCATAATTCATA</pcr_primer_p1>
		<pcr_primer_p2>AGTTTCTCTGTGGTTTCATTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTCTCTAACATGTAAGTCTAACTAGTAAGAACTTTGTGCAGTTTGATTTTCTACAGTAGTCTAAATTTCAAATTATCATAAAATTTTCAGAGACGTTTCGAGACAATGAAGACAATATAAATTTTAAAACCACACATTTATTGAACTCAAATTAAGAACAATATTACCAGTCACAATGAAACCACAGAGAAACT</canonical_amplicon>
		<polymorphic_amplicon>TCCTCCATCATTCATAATTCATAATTTGTTTTCAATGGTCAGAATTCTTGAGAAGCTCTCTAACAWGTAAGTCTAACTAGTAAGAACTTTGTGCAGTTTGATTTTCTACAGTAGTCTAAATTTCAAATTATCATAAAATTTTCAGAGACGTTTCGAGACAATGAAGACAATATAAATTTTAAAACCACACATTTATTGAACTCAAATTAAGAACAATATTACCAGTCACAATGAAACCACAGAGAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27774</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>353486</contig_pos>
        <strand>+</strand>
        <context>AAAGTCAATG[G/T]AAAAAAWATT</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTCTACTGGTTTATGTTGTTCATCTTGGTGAGTCTTCCAAAAGTCAATG</left_flank>
        <right_flank>AAAAAAAATTTCTGTGGCGCATAGCTCAAAAAAAAATTCGCTGGAATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTCCTTACATTCTTGAAATTTTTTTCAGCTTCCCTCTATCAGATCCTAGTACTTTTGCTTGATCTTTATCCAGGTTCTTTGAAAGCCGAAATTCTGAAATTCCGAAATTCCGAAATTCTCATATTCCCATATTCTGATATTCCGAGATTCTGAAATTCTGAGATTCTGAAATTCTGAGATTCTGAGGTTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTGAGGTTCTGAGATTCTGAAATTCTGAAATTCTGAAATTCTGAGATTCTGAAATTCACAGATTTTCAGATTCACAGATTTCTAAATTTCCTCTTATTTATTTCAGATTCTCCTACTTCTATTTTTTCCAAAAAAATCCAAAAAATCCCAATAATGTGCTTTTTTCCAGACCGATGAAGTCTCTTCTTGTCTCGCTTCTACTGGTTTATGTTGTTCATCTTGGTGAGTCTTCCAAAAGTCAATGAAAAAAAAATTTCTGTGGCGCATAGCTCAAAAAAAAATTCGCTGGAATTTTGGAAAATGGATTTCAGACTTTGACCCAATTTCCTCGTGGGATAATTATCACGAATTGGCATATATTTTCAAAGGGTTTAGATAAATGGATTACTGTATTAGGATCTAAAAATTACACACAACTTTTAGTTATGCGTTCCCTTAGCCAGGAAGTATAGTTCCCTTCCAAAACTGTACTGTCCACTCTCCTAATAAGCGTCTTCGCCTTTCCCTTACGCCATATAATTGCTCATCCTCTGAACCCTACCATCTCCTCGAGACTAGCCATTATCCCTCATTCTATTCAGCCCAATCGCAGCACGCATGTGTCGACCGACACATCCACTGTGTCTTTTGGTCGCAAGCCGGAGAATGTGAGGTGAATCCAAGATTCATGAAGAGACAATGTATGAAGGCGTGTGGGGTGAGTCTCAGGATTTCAGATTATAAAAAAAGTGAGGAAATTTTAGAC</canonical>
            <polymorphic>CATTCCTTACATTCTTGAAATTTTTTTCAGCTTCCCTCTATCAGATCCTAGTACTTTTGCTTGATCTTTATCCAGGTTCTTTGAAAGCCGAAATTCTGAAATTCCGAAATTCCGAAATTCTCATATTCCCATATTCTGATATTCCGAGATTCTGAAATTCTGAGATTCTGAAATTCTGAGATTCTGAGGTTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTGAGGTTCTGAGATTCTGAAATTCTGAAATTCTGAAATTCTGAGATTCTGAAATTCACAGATTTTCAGATTCACAGATTTCTAAATTTCCTCTTATTTATTTCAGATTCTCCTACTTCTATTTTTTCCAAAAAAATCCAAAAAATCCCAATAATGTGCTTTTTTCCAGACCGATGAAGTCTCTTCTTGTCTCGCTTCTACTGGTTTATGTTGTTCATCTTGGTGAGTCTTCCAAAAGTCAATGKAAAAAAAATTTCTGTGGCGCATAGCTCAAAAAAAAATTCGCTGGAATTTTGGAAAATGGATTTCAGACTTTGACCCAATTTCCTCGTGGGATAATTATCACGAATTGGCATATATTTTCAAAGGGTTTAGATAAATGGATTACTGTATTAGGATCTAAAAATTACACACAACTTTTAGTTATGCGTTCCCTTAGCCAGGAAGTATAGTTCCCTTCCAAAACTGTACTGTCCACTCTCCTAATAAGCGTCTTCGCCTTTCCCTTACGCCATATAATTGCTCATCCTCTGAACCCTACCATCTCCTCGAGACTAGCCATTATCCCTCATTCTATTCAGCCCAATCGCAGCACGCATGTGTCGACCGACACATCCACTGTGTCTTTTGGTCGCAAGCCGGAGAATGTGAGGTGAATCCAAGATTCATGAAGAGACAATGTATGAAGGCGTGTGGGGTGAGTCTCAGGATTTCAGATTATAAAAAAAGTGAGGAAATTTTAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTTCTTGTCTCGCTTCTACT</pcr_primer_p1>
		<pcr_primer_p2>CGCATAACTAAAAGTTGTGTGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTTCTTGTCTCGCTTCTACTGGTTTATGTTGTTCATCTTGGTGAGTCTTCCAAAAGTCAATGAAAAAAAAATTTCTGTGGCGCATAGCTCAAAAAAAAATTCGCTGGAATTTTGGAAAATGGATTTCAGACTTTGACCCAATTTCCTCGTGGGATAATTATCACGAATTGGCATATATTTTCAAAGGGTTTAGATAAATGGATTACTGTATTAGGATCTAAAAATTACACACAACTTTTAGTTATGCG</canonical_amplicon>
		<polymorphic_amplicon>CTCTTCTTGTCTCGCTTCTACTGGTTTATGTTGTTCATCTTGGTGAGTCTTCCAAAAGTCAATGKAAAAAAAATTTCTGTGGCGCATAGCTCAAAAAAAAATTCGCTGGAATTTTGGAAAATGGATTTCAGACTTTGACCCAATTTCCTCGTGGGATAATTATCACGAATTGGCATATATTTTCAAAGGGTTTAGATAAATGGATTACTGTATTAGGATCTAAAAATTACACACAACTTTTAGTTATGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27775</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>353514</contig_pos>
        <strand>+</strand>
        <context>CGCATAGCTC[A/G]AAAAAAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGAGTCTTCCAAAAGTCAATGAAAAAAAAATTTCTGTGGCGCATAGCTC</left_flank>
        <right_flank>AAAAAAAATTCGCTGGAATTTTGGAAAATGGATTTCAGACTTTGACCCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTTCCCTCTATCAGATCCTAGTACTTTTGCTTGATCTTTATCCAGGTTCTTTGAAAGCCGAAATTCTGAAATTCCGAAATTCCGAAATTCTCATATTCCCATATTCTGATATTCCGAGATTCTGAAATTCTGAGATTCTGAAATTCTGAGATTCTGAGGTTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTGAGGTTCTGAGATTCTGAAATTCTGAAATTCTGAAATTCTGAGATTCTGAAATTCACAGATTTTCAGATTCACAGATTTCTAAATTTCCTCTTATTTATTTCAGATTCTCCTACTTCTATTTTTTCCAAAAAAATCCAAAAAATCCCAATAATGTGCTTTTTTCCAGACCGATGAAGTCTCTTCTTGTCTCGCTTCTACTGGTTTATGTTGTTCATCTTGGTGAGTCTTCCAAAAGTCAATGAAAAAAAAATTTCTGTGGCGCATAGCTCAAAAAAAAATTCGCTGGAATTTTGGAAAATGGATTTCAGACTTTGACCCAATTTCCTCGTGGGATAATTATCACGAATTGGCATATATTTTCAAAGGGTTTAGATAAATGGATTACTGTATTAGGATCTAAAAATTACACACAACTTTTAGTTATGCGTTCCCTTAGCCAGGAAGTATAGTTCCCTTCCAAAACTGTACTGTCCACTCTCCTAATAAGCGTCTTCGCCTTTCCCTTACGCCATATAATTGCTCATCCTCTGAACCCTACCATCTCCTCGAGACTAGCCATTATCCCTCATTCTATTCAGCCCAATCGCAGCACGCATGTGTCGACCGACACATCCACTGTGTCTTTTGGTCGCAAGCCGGAGAATGTGAGGTGAATCCAAGATTCATGAAGAGACAATGTATGAAGGCGTGTGGGGTGAGTCTCAGGATTTCAGATTATAAAAAAAGTGAGGAAATTTTAGACATGTCCAAGAAGCAATGCTACTCTTCAT</canonical>
            <polymorphic>AGCTTCCCTCTATCAGATCCTAGTACTTTTGCTTGATCTTTATCCAGGTTCTTTGAAAGCCGAAATTCTGAAATTCCGAAATTCCGAAATTCTCATATTCCCATATTCTGATATTCCGAGATTCTGAAATTCTGAGATTCTGAAATTCTGAGATTCTGAGGTTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTGAGGTTCTGAGATTCTGAAATTCTGAAATTCTGAAATTCTGAGATTCTGAAATTCACAGATTTTCAGATTCACAGATTTCTAAATTTCCTCTTATTTATTTCAGATTCTCCTACTTCTATTTTTTCCAAAAAAATCCAAAAAATCCCAATAATGTGCTTTTTTCCAGACCGATGAAGTCTCTTCTTGTCTCGCTTCTACTGGTTTATGTTGTTCATCTTGGTGAGTCTTCCAAAAGTCAATGAAAAAAAAATTTCTGTGGCGCATAGCTCRAAAAAAAATTCGCTGGAATTTTGGAAAATGGATTTCAGACTTTGACCCAATTTCCTCGTGGGATAATTATCACGAATTGGCATATATTTTCAAAGGGTTTAGATAAATGGATTACTGTATTAGGATCTAAAAATTACACACAACTTTTAGTTATGCGTTCCCTTAGCCAGGAAGTATAGTTCCCTTCCAAAACTGTACTGTCCACTCTCCTAATAAGCGTCTTCGCCTTTCCCTTACGCCATATAATTGCTCATCCTCTGAACCCTACCATCTCCTCGAGACTAGCCATTATCCCTCATTCTATTCAGCCCAATCGCAGCACGCATGTGTCGACCGACACATCCACTGTGTCTTTTGGTCGCAAGCCGGAGAATGTGAGGTGAATCCAAGATTCATGAAGAGACAATGTATGAAGGCGTGTGGGGTGAGTCTCAGGATTTCAGATTATAAAAAAAGTGAGGAAATTTTAGACATGTCCAAGAAGCAATGCTACTCTTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTTCTTGTCTCGCTTCTACT</pcr_primer_p1>
		<pcr_primer_p2>CGCATAACTAAAAGTTGTGTGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTTCTTGTCTCGCTTCTACTGGTTTATGTTGTTCATCTTGGTGAGTCTTCCAAAAGTCAATGAAAAAAAAATTTCTGTGGCGCATAGCTCAAAAAAAAATTCGCTGGAATTTTGGAAAATGGATTTCAGACTTTGACCCAATTTCCTCGTGGGATAATTATCACGAATTGGCATATATTTTCAAAGGGTTTAGATAAATGGATTACTGTATTAGGATCTAAAAATTACACACAACTTTTAGTTATGCG</canonical_amplicon>
		<polymorphic_amplicon>CTCTTCTTGTCTCGCTTCTACTGGTTTATGTTGTTCATCTTGGTGAGTCTTCCAAAAGTCAATGAAAAAAAAATTTCTGTGGCGCATAGCTCRAAAAAAAATTCGCTGGAATTTTGGAAAATGGATTTCAGACTTTGACCCAATTTCCTCGTGGGATAATTATCACGAATTGGCATATATTTTCAAAGGGTTTAGATAAATGGATTACTGTATTAGGATCTAAAAATTACACACAACTTTTAGTTATGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27776</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>358391</contig_pos>
        <strand>+</strand>
        <context>TATTCTTTGT[C/T]TCTGAAGCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAAGCCTGTATTCTTTGT</left_flank>
        <right_flank>TCTGAAGCTCAGAAATTCAGAAATTCAAAAAAATTTAAATTTTGCGTCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGTGCCCGACCAGAATGTCCGTCAACGAATCGCTCAACTCTACCGTACTCCTGACGACGTGGATTTCTATGTTGGCGGAATTCTCGAACAACCAGCCGCAGGAAGTGTCGTCGGAGCCACGTTCGCCTGTGTCATCGGAAAACAATTCGAACGTCTTCGCGATGGAGACAGATTCTATTTTGAGAATCCAGGAGTATTCACATCTTCTCAATTGGCTGAACTGAAGAGGACCACACTTTCGTGGGTGTTATGTCAGACAGGGGATAAGTGAGTTTTTTGGGTTTGGGATCAGTCGAAAAAATCAAAAATGTAGAATCAGATGGAGGCATCATGTATGTATCATGTATCATGTATCATGTATGTAAAAAAATGTATGTATGTATGTATGTATGTATGTATATATGTATGTATCCAAAAAAAAGGAAGGTTTTAAAAACTTCATTTAAAAAGACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAAGCCTGTATTCTTTGTTTCTGAAGCTCAGAAATTCAGAAATTCAAAAAAATTTAAATTTTGCGTCATTTTTTTGTGTGCCCCAGTAGAAGGAAAAGCGAGGTCTAAACCTATTATATGAAACTAAAAACCGAAAAGTCTGAAAAAAAATTTCAGTCAAAAAAAAGCTGAATCTTTCACAAGTCAAAGCAAAAATTTCCCTGATTTTTTTTTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATATACAATACAATACAAATAGGCTTGTTAGGTTTGTAAGACTTATCATAAACTTGTATGCCTAGTACAGCCTTTCAGACTTATTATAGGCTTGTAGGCTTATTTTTTGACTTGTATGCTTTTTATAGTCTTTTAGGCTTTTTATAGGCTTGTAGGCTTTTTATAGACGTGTAGGCTTGTTATAGACTTGTTAGGAAACACCTAAATATTCTAAAATCAAATATGTGGGTTAACTAAAATTGAAAAATTTGCCGTGAGAATAAAAAA</canonical>
            <polymorphic>GAAGTGCCCGACCAGAATGTCCGTCAACGAATCGCTCAACTCTACCGTACTCCTGACGACGTGGATTTCTATGTTGGCGGAATTCTCGAACAACCAGCCGCAGGAAGTGTCGTCGGAGCCACGTTCGCCTGTGTCATCGGAAAACAATTCGAACGTCTTCGCGATGGAGACAGATTCTATTTTGAGAATCCAGGAGTATTCACATCTTCTCAATTGGCTGAACTGAAGAGGACCACACTTTCGTGGGTGTTATGTCAGACAGGGGATAAGTGAGTTTTTTGGGTTTGGGATCAGTCGAAAAAATCAAAAATGTAGAATCAGATGGAGGCATCATGTATGTATCATGTATCATGTATCATGTATGTAAAAAAATGTATGTATGTATGTATGTATGTATGTATATATGTATGTATCCAAAAAAAAGGAAGGTTTTAAAAACTTCATTTAAAAAGACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAAGCCTGTATTCTTTGTYTCTGAAGCTCAGAAATTCAGAAATTCAAAAAAATTTAAATTTTGCGTCATTTTTTTGTGTGCCCCAGTAGAAGGAAAAGCGAGGTCTAAACCTATTATATGAAACTAAAAACCGAAAAGTCTGAAAAAAAATTTCAGTCAAAAAAAAGCTGAATCTTTCACAAGTCAAAGCAAAAATTTCCCTGATTTTTTTTTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATATACAATACAATACAAATAGGCTTGTTAGGTTTGTAAGACTTATCATAAACTTGTATGCCTAGTACAGCCTTTCAGACTTATTATAGGCTTGTAGGCTTATTTTTTGACTTGTATGCTTTTTATAGTCTTTTAGGCTTTTTATAGGCTTGTAGGCTTTTTATAGACGTGTAGGCTTGTTATAGACTTGTTAGGAAACACCTAAATATTCTAAAATCAAATATGTGGGTTAACTAAAATTGAAAAATTTGCCGTGAGAATAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCAAAAATGTAGAATCAGATG</pcr_primer_p1>
		<pcr_primer_p2>ACCTAACAAGCCTATTTGTATTG</pcr_primer_p2>
		<pcr_amplicon_size>466</pcr_amplicon_size>
		<canonical_amplicon>AAATCAAAAATGTAGAATCAGATGGAGGCATCATGTATGTATCATGTATCATGTATCATGTATGTAAAAAAATGTATGTATGTATGTATGTATGTATGTATATATGTATGTATCCAAAAAAAAGGAAGGTTTTAAAAACTTCATTTAAAAAGACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAAGCCTGTATTCTTTGTTTCTGAAGCTCAGAAATTCAGAAATTCAAAAAAATTTAAATTTTGCGTCATTTTTTTGTGTGCCCCAGTAGAAGGAAAAGCGAGGTCTAAACCTATTATATGAAACTAAAAACCGAAAAGTCTGAAAAAAAATTTCAGTCAAAAAAAAGCTGAATCTTTCACAAGTCAAAGCAAAAATTTCCCTGATTTTTTTTTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATATACAATACAATACAAATAGGCTTGTTAGGT</canonical_amplicon>
		<polymorphic_amplicon>AAATCAAAAATGTAGAATCAGATGGAGGCATCATGTATGTATCATGTATCATGTATCATGTATGTAAAAAAATGTATGTATGTATGTATGTATGTATGTATATATGTATGTATCCAAAAAAAAGGAAGGTTTTAAAAACTTCATTTAAAAAGACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAAGCCTGTATTCTTTGTYTCTGAAGCTCAGAAATTCAGAAATTCAAAAAAATTTAAATTTTGCGTCATTTTTTTGTGTGCCCCAGTAGAAGGAAAAGCGAGGTCTAAACCTATTATATGAAACTAAAAACCGAAAAGTCTGAAAAAAAATTTCAGTCAAAAAAAAGCTGAATCTTTCACAAGTCAAAGCAAAAATTTCCCTGATTTTTTTTTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATATACAATACAATACAAATAGGCTTGTTAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27777</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>358490</contig_pos>
        <strand></strand>
        <context>aacctattat[A/C]tgaaactaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTTTTTGTGTGCCCCAGTAGAAGGAAAAGCGAGGTCTAAACCTATTAT</left_flank>
        <right_flank>TGAAACTAAAAACCGAAAAGTCTGAAAAAAAATTTCAGTCAAAAAAAAGC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAGGAAGTGTCGTCGGAGCCACGTTCGCCTGTGTCATCGGAAAACAATTCGAACGTCTTCGCGATGGAGACAGATTCTATTTTGAGAATCCAGGAGTATTCACATCTTCTCAATTGGCTGAACTGAAGAGGACCACACTTTCGTGGGTGTTATGTCAGACAGGGGATAAGTGAGTTTTTTGGGTTTGGGATCAGTCGAAAAAATCAAAAATGTAGAATCAGATGGAGGCATCATGTATGTATCATGTATCATGTATCATGTATGTAAAAAAATGTATGTATGTATGTATGTATGTATGTATATATGTATGTATCCAAAAAAAAGGAAGGTTTTAAAAACTTCATTTAAAAAGACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAAGCCTGTATTCTTTGTTTCTGAAGCTCAGAAATTCAGAAATTCAAAAAAATTTAAATTTTGCGTCATTTTTTTGTGTGCCCCAGTAGAAGGAAAAGCGAGGTCTAAACCTATTATATGAAACTAAAAACCGAAAAGTCTGAAAAAAAATTTCAGTCAAAAAAAAGCTGAATCTTTCACAAGTCAAAGCAAAAATTTCCCTGATTTTTTTTTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATATACAATACAATACAAATAGGCTTGTTAGGTTTGTAAGACTTATCATAAACTTGTATGCCTAGTACAGCCTTTCAGACTTATTATAGGCTTGTAGGCTTATTTTTTGACTTGTATGCTTTTTATAGTCTTTTAGGCTTTTTATAGGCTTGTAGGCTTTTTATAGACGTGTAGGCTTGTTATAGACTTGTTAGGAAACACCTAAATATTCTAAAATCAAATATGTGGGTTAACTAAAATTGAAAAATTTGCCGTGAGAATAAAAAAACTTACCCAAAAAATTCATTAAAAAGTAAGCATTTTTAAATAACAAAATTTATCATCTTTCAGCATGCTCCGAGTCGGCCGTCGTGCATTCGACATCGA</canonical>
            <polymorphic>GCAGGAAGTGTCGTCGGAGCCACGTTCGCCTGTGTCATCGGAAAACAATTCGAACGTCTTCGCGATGGAGACAGATTCTATTTTGAGAATCCAGGAGTATTCACATCTTCTCAATTGGCTGAACTGAAGAGGACCACACTTTCGTGGGTGTTATGTCAGACAGGGGATAAGTGAGTTTTTTGGGTTTGGGATCAGTCGAAAAAATCAAAAATGTAGAATCAGATGGAGGCATCATGTATGTATCATGTATCATGTATCATGTATGTAAAAAAATGTATGTATGTATGTATGTATGTATGTATATATGTATGTATCCAAAAAAAAGGAAGGTTTTAAAAACTTCATTTAAAAAGACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAAGCCTGTATTCTTTGTTTCTGAAGCTCAGAAATTCAGAAATTCAAAAAAATTTAAATTTTGCGTCATTTTTTTGTGTGCCCCAGTAGAAGGAAAAGCGAGGTCTAAACCTATTATMTGAAACTAAAAACCGAAAAGTCTGAAAAAAAATTTCAGTCAAAAAAAAGCTGAATCTTTCACAAGTCAAAGCAAAAATTTCCCTGATTTTTTTTTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATATACAATACAATACAAATAGGCTTGTTAGGTTTGTAAGACTTATCATAAACTTGTATGCCTAGTACAGCCTTTCAGACTTATTATAGGCTTGTAGGCTTATTTTTTGACTTGTATGCTTTTTATAGTCTTTTAGGCTTTTTATAGGCTTGTAGGCTTTTTATAGACGTGTAGGCTTGTTATAGACTTGTTAGGAAACACCTAAATATTCTAAAATCAAATATGTGGGTTAACTAAAATTGAAAAATTTGCCGTGAGAATAAAAAAACTTACCCAAAAAATTCATTAAAAAGTAAGCATTTTTAAATAACAAAATTTATCATCTTTCAGCATGCTCCGAGTCGGCCGTCGTGCATTCGACATCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGCTCAGAAATTCAGAAA</pcr_primer_p1>
		<pcr_primer_p2>ACCTAACAAGCCTATTTGTATTG</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>TGAAGCTCAGAAATTCAGAAATTCAAAAAAATTTAAATTTTGCGTCATTTTTTTGTGTGCCCCAGTAGAAGGAAAAGCGAGGTCTAAACCTATTATATGAAACTAAAAACCGAAAAGTCTGAAAAAAAATTTCAGTCAAAAAAAAGCTGAATCTTTCACAAGTCAAAGCAAAAATTTCCCTGATTTTTTTTTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATATACAATACAATACAAATAGGCTTGTTAGGT</canonical_amplicon>
		<polymorphic_amplicon>TGAAGCTCAGAAATTCAGAAATTCAAAAAAATTTAAATTTTGCGTCATTTTTTTGTGTGCCCCAGTAGAAGGAAAAGCGAGGTCTAAACCTATTATMTGAAACTAAAAACCGAAAAGTCTGAAAAAAAATTTCAGTCAAAAAAAAGCTGAATCTTTCACAAGTCAAAGCAAAAATTTCCCTGATTTTTTTTTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATATACAATACAATACAAATAGGCTTGTTAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27778</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>358634</contig_pos>
        <strand>+</strand>
        <context>AATAKRCAAT[A/G]CAATACAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATATACAAT</left_flank>
        <right_flank>CAATACAAATAGGCTTGTTAGGTTTGTAAGACTTATCATAAACTTGTATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGTGTTATGTCAGACAGGGGATAAGTGAGTTTTTTGGGTTTGGGATCAGTCGAAAAAATCAAAAATGTAGAATCAGATGGAGGCATCATGTATGTATCATGTATCATGTATCATGTATGTAAAAAAATGTATGTATGTATGTATGTATGTATGTATATATGTATGTATCCAAAAAAAAGGAAGGTTTTAAAAACTTCATTTAAAAAGACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAAGCCTGTATTCTTTGTTTCTGAAGCTCAGAAATTCAGAAATTCAAAAAAATTTAAATTTTGCGTCATTTTTTTGTGTGCCCCAGTAGAAGGAAAAGCGAGGTCTAAACCTATTATATGAAACTAAAAACCGAAAAGTCTGAAAAAAAATTTCAGTCAAAAAAAAGCTGAATCTTTCACAAGTCAAAGCAAAAATTTCCCTGATTTTTTTTTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATATACAATACAATACAAATAGGCTTGTTAGGTTTGTAAGACTTATCATAAACTTGTATGCCTAGTACAGCCTTTCAGACTTATTATAGGCTTGTAGGCTTATTTTTTGACTTGTATGCTTTTTATAGTCTTTTAGGCTTTTTATAGGCTTGTAGGCTTTTTATAGACGTGTAGGCTTGTTATAGACTTGTTAGGAAACACCTAAATATTCTAAAATCAAATATGTGGGTTAACTAAAATTGAAAAATTTGCCGTGAGAATAAAAAAACTTACCCAAAAAATTCATTAAAAAGTAAGCATTTTTAAATAACAAAATTTATCATCTTTCAGCATGCTCCGAGTCGGCCGTCGTGCATTCGACATCGAAGATGGCTCTCGTGCCGTTCCATGCTCCTCAATCAATGGATTGAACCTCGAAGCATGGAGAGAATAGATTACCCTTTATTTTTTCTCCACTAATCCCAAAAAACTTCTTCTCCCCCCCAAAAAATGTGCCAAATTTCCTGATTC</canonical>
            <polymorphic>TGGGTGTTATGTCAGACAGGGGATAAGTGAGTTTTTTGGGTTTGGGATCAGTCGAAAAAATCAAAAATGTAGAATCAGATGGAGGCATCATGTATGTATCATGTATCATGTATCATGTATGTAAAAAAATGTATGTATGTATGTATGTATGTATGTATATATGTATGTATCCAAAAAAAAGGAAGGTTTTAAAAACTTCATTTAAAAAGACTTAAAGTTTGAAGAAGCTGAAAAAGGTCAAGCCTGTATTCTTTGTTTCTGAAGCTCAGAAATTCAGAAATTCAAAAAAATTTAAATTTTGCGTCATTTTTTTGTGTGCCCCAGTAGAAGGAAAAGCGAGGTCTAAACCTATTATATGAAACTAAAAACCGAAAAGTCTGAAAAAAAATTTCAGTCAAAAAAAAGCTGAATCTTTCACAAGTCAAAGCAAAAATTTCCCTGATTTTTTTTTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATATACAATRCAATACAAATAGGCTTGTTAGGTTTGTAAGACTTATCATAAACTTGTATGCCTAGTACAGCCTTTCAGACTTATTATAGGCTTGTAGGCTTATTTTTTGACTTGTATGCTTTTTATAGTCTTTTAGGCTTTTTATAGGCTTGTAGGCTTTTTATAGACGTGTAGGCTTGTTATAGACTTGTTAGGAAACACCTAAATATTCTAAAATCAAATATGTGGGTTAACTAAAATTGAAAAATTTGCCGTGAGAATAAAAAAACTTACCCAAAAAATTCATTAAAAAGTAAGCATTTTTAAATAACAAAATTTATCATCTTTCAGCATGCTCCGAGTCGGCCGTCGTGCATTCGACATCGAAGATGGCTCTCGTGCCGTTCCATGCTCCTCAATCAATGGATTGAACCTCGAAGCATGGAGAGAATAGATTACCCTTTATTTTTTCTCCACTAATCCCAAAAAACTTCTTCTCCCCCCCAAAAAATGTGCCAAATTTCCTGATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGCTCAGAAATTCAGAAA</pcr_primer_p1>
		<pcr_primer_p2>GGCTGTACTAGGCATACAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>TGAAGCTCAGAAATTCAGAAATTCAAAAAAATTTAAATTTTGCGTCATTTTTTTGTGTGCCCCAGTAGAAGGAAAAGCGAGGTCTAAACCTATTATATGAAACTAAAAACCGAAAAGTCTGAAAAAAAATTTCAGTCAAAAAAAAGCTGAATCTTTCACAAGTCAAAGCAAAAATTTCCCTGATTTTTTTTTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATATACAATACAATACAAATAGGCTTGTTAGGTTTGTAAGACTTATCATAAACTTGTATGCCTAGTACAGCC</canonical_amplicon>
		<polymorphic_amplicon>TGAAGCTCAGAAATTCAGAAATTCAAAAAAATTTAAATTTTGCGTCATTTTTTTGTGTGCCCCAGTAGAAGGAAAAGCGAGGTCTAAACCTATTATATGAAACTAAAAACCGAAAAGTCTGAAAAAAAATTTCAGTCAAAAAAAAGCTGAATCTTTCACAAGTCAAAGCAAAAATTTCCCTGATTTTTTTTTCTCAAAATATTTTCAAAATTAGGCTTATAAGCTTGTTAAATATACAATRCAATACAAATAGGCTTGTTAGGTTTGTAAGACTTATCATAAACTTGTATGCCTAGTACAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27779</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>429862</contig_pos>
        <strand></strand>
        <context>CCAAGAGGAT[C/A]GTCTCTCCGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AACGCTTCACCCAATGCTCCAAGGAGCTCGAAAAGCTACTCCAAGAGGAT</left_flank>
        <right_flank>GTCTCTCCGGCGCACCGCTTCTCTTGCTTGCAAACAAGTGTGATCTTCCA</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGTGGGAGGAGGCGGGAATCAAAGTACGCAAACACCGAGTCTCACTTTTTTTATTCCGACAATAGTTTCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGCGAAAAACGCATATTATTTCTGGCAACTTTGAAACTTAGAAAAATTATTCCAGAACGCTTCACCCAATGCTCCAAGGAGCTCGAAAAGCTACTCCAAGAGGATCGTCTCTCCGGCGCACCGCTTCTCTTGCTTGCAAACAAGTGTGATCTTCCAGCACCTTACCCTGCGTATGATCTCTCACATGTCTGCCGAAATTATTTTTCTTAACTTTACGAAGTTTTTTCTTCAGGTTCTTGATATTCCGAGGATCCGGGAAGAGAGATCTTGTCAGATTTTTAACTGCAGTGCGATCTCCGGCGAACTTCTGGTGCAAGCGATGACATGGCTGTGTGATGAAATTATGTGATGATGTCAGAAGTCGGATATTCATTCTTTTTTTGTGTGTTAATTTTTGATCTCTATTCTTGTACATACTAAACATATTTGAAAGTATTCATTTTTCATTGAAATTAAACATTGTAAATTGAAATTACAATATTTGTGGAGAATTGCGCTCAGAGAATCAGAAAACGCATAATTGAACTCTCAGGTAAACGATTCTGAATTAGATCTGACTTCATTCGGAATTAGATCGAATAATTCGAAATTCGGAATTAGATCTGA</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGTGGGAGGAGGCGGGAATCAAAGTACGCAAACACCGAGTCTCACTTTTTTTATTCCGACAATAGTTTCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGCGAAAAACGCATATTATTTCTGGCAACTTTGAAACTTAGAAAAATTATTCCAGAACGCTTCACCCAATGCTCCAAGGAGCTCGAAAAGCTACTCCAAGAGGATMGTCTCTCCGGCGCACCGCTTCTCTTGCTTGCAAACAAGTGTGATCTTCCAGCACCTTACCCTGCGTATGATCTCTCACATGTCTGCCGAAATTATTTTTCTTAACTTTACGAAGTTTTTTCTTCAGGTTCTTGATATTCCGAGGATCCGGGAAGAGAGATCTTGTCAGATTTTTAACTGCAGTGCGATCTCCGGCGAACTTCTGGTGCAAGCGATGACATGGCTGTGTGATGAAATTATGTGATGATGTCAGAAGTCGGATATTCATTCTTTTTTTGTGTGTTAATTTTTGATCTCTATTCTTGTACATACTAAACATATTTGAAAGTATTCATTTTTCATTGAAATTAAACATTGTAAATTGAAATTACAATATTTGTGGAGAATTGCGCTCAGAGAATCAGAAAACGCATAATTGAACTCTCAGGTAAACGATTCTGAATTAGATCTGACTTCATTCGGAATTAGATCGAATAATTCGAAATTCGGAATTAGATCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>496 154 105 75 45 28 27 27 22 14 7</canonical_bands>
                <polymorphic_bands>541 154 105 75 28 27 27 22 14 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTATTCCAGAACGCTTCAC</pcr_primer_p1>
		<pcr_primer_p2>ACTGCAGTTAAAAATCTGACAAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATTATTCCAGAACGCTTCACCCAATGCTCCAAGGAGCTCGAAAAGCTACTCCAAGAGGATCGTCTCTCCGGCGCACCGCTTCTCTTGCTTGCAAACAAGTGTGATCTTCCAGCACCTTACCCTGCGTATGATCTCTCACATGTCTGCCGAAATTATTTTTCTTAACTTTACGAAGTTTTTTCTTCAGGTTCTTGATATTCCGAGGATCCGGGAAGAGAGATCTTGTCAGATTTTTAACTGCAGT</canonical_amplicon>
		<polymorphic_amplicon>AATTATTCCAGAACGCTTCACCCAATGCTCCAAGGAGCTCGAAAAGCTACTCCAAGAGGATMGTCTCTCCGGCGCACCGCTTCTCTTGCTTGCAAACAAGTGTGATCTTCCAGCACCTTACCCTGCGTATGATCTCTCACATGTCTGCCGAAATTATTTTTCTTAACTTTACGAAGTTTTTTCTTCAGGTTCTTGATATTCCGAGGATCCGGGAAGAGAGATCTTGTCAGATTTTTAACTGCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27780</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>430013</contig_pos>
        <strand></strand>
        <context>GAGGATCCGG[G/C]AARAGAGATC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TTAACTTTACGAAGTTTTTTCTTCAGGTTCTTGATATTCCGAGGATCCGG</left_flank>
        <right_flank>AAGAGAGATCTTGTCAGATTTTTAACTGCAGTGCGATCTCCGGCGAACTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGTGGGAGGAGGCGGGAATCAAAGTACGCAAACACCGAGTCTCACTTTTTTTATTCCGACAATAGTTTCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGCGAAAAACGCATATTATTTCTGGCAACTTTGAAACTTAGAAAAATTATTCCAGAACGCTTCACCCAATGCTCCAAGGAGCTCGAAAAGCTACTCCAAGAGGATCGTCTCTCCGGCGCACCGCTTCTCTTGCTTGCAAACAAGTGTGATCTTCCAGCACCTTACCCTGCGTATGATCTCTCACATGTCTGCCGAAATTATTTTTCTTAACTTTACGAAGTTTTTTCTTCAGGTTCTTGATATTCCGAGGATCCGGGAAGAGAGATCTTGTCAGATTTTTAACTGCAGTGCGATCTCCGGCGAACTTCTGGTGCAAGCGATGACATGGCTGTGTGATGAAATTATGTGATGATGTCAGAAGTCGGATATTCATTCTTTTTTTGTGTGTTAATTTTTGATCTCTATTCTTGTACATACTAAACATATTTGAAAGTATTCATTTTTCATTGAAATTAAACATTGTAAATTGAAATTACAATATTTGTGGAGAATTGCGCTCAGAGAATCAGAAAACGCATAATTGAACTCTCAGGTAAACGATTCTGAATTAGATCTGACTTCATTCGGAATTAGATCGAATAATTCGAAATTCGGAATTAGATCTGACTAGAGAAGGTTGTAACTGGGGTATGGGACTTTGATATGAGACCTATATCATTCGAAAGCTGAGGATGAGACATTTTCAAATATATTCAGATTTTGCTGCGGACTTACCAGATTCTAGAAAATCGAGTTTAAAATTTGGCTGAAATTCGAA</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGTGGGAGGAGGCGGGAATCAAAGTACGCAAACACCGAGTCTCACTTTTTTTATTCCGACAATAGTTTCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGCGAAAAACGCATATTATTTCTGGCAACTTTGAAACTTAGAAAAATTATTCCAGAACGCTTCACCCAATGCTCCAAGGAGCTCGAAAAGCTACTCCAAGAGGATCGTCTCTCCGGCGCACCGCTTCTCTTGCTTGCAAACAAGTGTGATCTTCCAGCACCTTACCCTGCGTATGATCTCTCACATGTCTGCCGAAATTATTTTTCTTAACTTTACGAAGTTTTTTCTTCAGGTTCTTGATATTCCGAGGATCCGGSAAGAGAGATCTTGTCAGATTTTTAACTGCAGTGCGATCTCCGGCGAACTTCTGGTGCAAGCGATGACATGGCTGTGTGATGAAATTATGTGATGATGTCAGAAGTCGGATATTCATTCTTTTTTTGTGTGTTAATTTTTGATCTCTATTCTTGTACATACTAAACATATTTGAAAGTATTCATTTTTCATTGAAATTAAACATTGTAAATTGAAATTACAATATTTGTGGAGAATTGCGCTCAGAGAATCAGAAAACGCATAATTGAACTCTCAGGTAAACGATTCTGAATTAGATCTGACTTCATTCGGAATTAGATCGAATAATTCGAAATTCGGAATTAGATCTGACTAGAGAAGGTTGTAACTGGGGTATGGGACTTTGATATGAGACCTATATCATTCGAAAGCTGAGGATGAGACATTTTCAAATATATTCAGATTTTGCTGCGGACTTACCAGATTCTAGAAAATCGAGTTTAAAATTTGGCTGAAATTCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTGCAAACAAGTGTGATCTT</pcr_primer_p1>
		<pcr_primer_p2>GAATGAATATCCGACTTCTGAC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTTGCAAACAAGTGTGATCTTCCAGCACCTTACCCTGCGTATGATCTCTCACATGTCTGCCGAAATTATTTTTCTTAACTTTACGAAGTTTTTTCTTCAGGTTCTTGATATTCCGAGGATCCGGGAAGAGAGATCTTGTCAGATTTTTAACTGCAGTGCGATCTCCGGCGAACTTCTGGTGCAAGCGATGACATGGCTGTGTGATGAAATTATGTGATGATGTCAGAAGTCGGATATTCATTC</canonical_amplicon>
		<polymorphic_amplicon>CTTGCAAACAAGTGTGATCTTCCAGCACCTTACCCTGCGTATGATCTCTCACATGTCTGCCGAAATTATTTTTCTTAACTTTACGAAGTTTTTTCTTCAGGTTCTTGATATTCCGAGGATCCGGSAAGAGAGATCTTGTCAGATTTTTAACTGCAGTGCGATCTCCGGCGAACTTCTGGTGCAAGCGATGACATGGCTGTGTGATGAAATTATGTGATGATGTCAGAAGTCGGATATTCATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27781</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>430016</contig_pos>
        <strand></strand>
        <context>GATCCGGSAA[G/A]AGAGATCTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACTTTACGAAGTTTTTTCTTCAGGTTCTTGATATTCCGAGGATCCGGGAA</left_flank>
        <right_flank>AGAGATCTTGTCAGATTTTTAACTGCAGTGCGATCTCCGGCGAACTTCTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGTGGGAGGAGGCGGGAATCAAAGTACGCAAACACCGAGTCTCACTTTTTTTATTCCGACAATAGTTTCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGCGAAAAACGCATATTATTTCTGGCAACTTTGAAACTTAGAAAAATTATTCCAGAACGCTTCACCCAATGCTCCAAGGAGCTCGAAAAGCTACTCCAAGAGGATCGTCTCTCCGGCGCACCGCTTCTCTTGCTTGCAAACAAGTGTGATCTTCCAGCACCTTACCCTGCGTATGATCTCTCACATGTCTGCCGAAATTATTTTTCTTAACTTTACGAAGTTTTTTCTTCAGGTTCTTGATATTCCGAGGATCCGGGAAGAGAGATCTTGTCAGATTTTTAACTGCAGTGCGATCTCCGGCGAACTTCTGGTGCAAGCGATGACATGGCTGTGTGATGAAATTATGTGATGATGTCAGAAGTCGGATATTCATTCTTTTTTTGTGTGTTAATTTTTGATCTCTATTCTTGTACATACTAAACATATTTGAAAGTATTCATTTTTCATTGAAATTAAACATTGTAAATTGAAATTACAATATTTGTGGAGAATTGCGCTCAGAGAATCAGAAAACGCATAATTGAACTCTCAGGTAAACGATTCTGAATTAGATCTGACTTCATTCGGAATTAGATCGAATAATTCGAAATTCGGAATTAGATCTGACTAGAGAAGGTTGTAACTGGGGTATGGGACTTTGATATGAGACCTATATCATTCGAAAGCTGAGGATGAGACATTTTCAAATATATTCAGATTTTGCTGCGGACTTACCAGATTCTAGAAAATCGAGTTTAAAATTTGGCTGAAATTCGAATAT</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGTGGGAGGAGGCGGGAATCAAAGTACGCAAACACCGAGTCTCACTTTTTTTATTCCGACAATAGTTTCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGCGAAAAACGCATATTATTTCTGGCAACTTTGAAACTTAGAAAAATTATTCCAGAACGCTTCACCCAATGCTCCAAGGAGCTCGAAAAGCTACTCCAAGAGGATCGTCTCTCCGGCGCACCGCTTCTCTTGCTTGCAAACAAGTGTGATCTTCCAGCACCTTACCCTGCGTATGATCTCTCACATGTCTGCCGAAATTATTTTTCTTAACTTTACGAAGTTTTTTCTTCAGGTTCTTGATATTCCGAGGATCCGGGAARAGAGATCTTGTCAGATTTTTAACTGCAGTGCGATCTCCGGCGAACTTCTGGTGCAAGCGATGACATGGCTGTGTGATGAAATTATGTGATGATGTCAGAAGTCGGATATTCATTCTTTTTTTGTGTGTTAATTTTTGATCTCTATTCTTGTACATACTAAACATATTTGAAAGTATTCATTTTTCATTGAAATTAAACATTGTAAATTGAAATTACAATATTTGTGGAGAATTGCGCTCAGAGAATCAGAAAACGCATAATTGAACTCTCAGGTAAACGATTCTGAATTAGATCTGACTTCATTCGGAATTAGATCGAATAATTCGAAATTCGGAATTAGATCTGACTAGAGAAGGTTGTAACTGGGGTATGGGACTTTGATATGAGACCTATATCATTCGAAAGCTGAGGATGAGACATTTTCAAATATATTCAGATTTTGCTGCGGACTTACCAGATTCTAGAAAATCGAGTTTAAAATTTGGCTGAAATTCGAATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGCAAACAAGTGTGATCTT</pcr_primer_p1>
		<pcr_primer_p2>GAATGAATATCCGACTTCTGAC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTTGCAAACAAGTGTGATCTTCCAGCACCTTACCCTGCGTATGATCTCTCACATGTCTGCCGAAATTATTTTTCTTAACTTTACGAAGTTTTTTCTTCAGGTTCTTGATATTCCGAGGATCCGGGAAGAGAGATCTTGTCAGATTTTTAACTGCAGTGCGATCTCCGGCGAACTTCTGGTGCAAGCGATGACATGGCTGTGTGATGAAATTATGTGATGATGTCAGAAGTCGGATATTCATTC</canonical_amplicon>
		<polymorphic_amplicon>CTTGCAAACAAGTGTGATCTTCCAGCACCTTACCCTGCGTATGATCTCTCACATGTCTGCCGAAATTATTTTTCTTAACTTTACGAAGTTTTTTCTTCAGGTTCTTGATATTCCGAGGATCCGGGAARAGAGATCTTGTCAGATTTTTAACTGCAGTGCGATCTCCGGCGAACTTCTGGTGCAAGCGATGACATGGCTGTGTGATGAAATTATGTGATGATGTCAGAAGTCGGATATTCATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27782</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>430099</contig_pos>
        <strand></strand>
        <context>GTGATGAAAT[T/G]ATGTGATGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATCTCCGGCGAACTTCTGGTGCAAGCGATGACATGGCTGTGTGATGAAAT</left_flank>
        <right_flank>ATGTGATGATGTCAGAAGTCGGATATTCATTCTTTTTTTGTGTGTTAATT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGTGGGAGGAGGCGGGAATCAAAGTACGCAAACACCGAGTCTCACTTTTTTTATTCCGACAATAGTTTCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGCGAAAAACGCATATTATTTCTGGCAACTTTGAAACTTAGAAAAATTATTCCAGAACGCTTCACCCAATGCTCCAAGGAGCTCGAAAAGCTACTCCAAGAGGATCGTCTCTCCGGCGCACCGCTTCTCTTGCTTGCAAACAAGTGTGATCTTCCAGCACCTTACCCTGCGTATGATCTCTCACATGTCTGCCGAAATTATTTTTCTTAACTTTACGAAGTTTTTTCTTCAGGTTCTTGATATTCCGAGGATCCGGGAAGAGAGATCTTGTCAGATTTTTAACTGCAGTGCGATCTCCGGCGAACTTCTGGTGCAAGCGATGACATGGCTGTGTGATGAAATTATGTGATGATGTCAGAAGTCGGATATTCATTCTTTTTTTGTGTGTTAATTTTTGATCTCTATTCTTGTACATACTAAACATATTTGAAAGTATTCATTTTTCATTGAAATTAAACATTGTAAATTGAAATTACAATATTTGTGGAGAATTGCGCTCAGAGAATCAGAAAACGCATAATTGAACTCTCAGGTAAACGATTCTGAATTAGATCTGACTTCATTCGGAATTAGATCGAATAATTCGAAATTCGGAATTAGATCTGACTAGAGAAGGTTGTAACTGGGGTATGGGACTTTGATATGAGACCTATATCATTCGAAAGCTGAGGATGAGACATTTTCAAATATATTCAGATTTTGCTGCGGACTTACCAGATTCTAGAAAATCGAGTTTAAAATTTGGCTGAAATTCGAATATTTTGAGGGCGAGATCTCCCCCCTTTCTTATATGCATCGGGTAACCAGTGGCAAGCAGCGACTGGTGGTGTAGCACAGGTCCTG</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGGTGGGAGGAGGCGGGAATCAAAGTACGCAAACACCGAGTCTCACTTTTTTTATTCCGACAATAGTTTCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGCGAAAAACGCATATTATTTCTGGCAACTTTGAAACTTAGAAAAATTATTCCAGAACGCTTCACCCAATGCTCCAAGGAGCTCGAAAAGCTACTCCAAGAGGATCGTCTCTCCGGCGCACCGCTTCTCTTGCTTGCAAACAAGTGTGATCTTCCAGCACCTTACCCTGCGTATGATCTCTCACATGTCTGCCGAAATTATTTTTCTTAACTTTACGAAGTTTTTTCTTCAGGTTCTTGATATTCCGAGGATCCGGGAAGAGAGATCTTGTCAGATTTTTAACTGCAGTGCGATCTCCGGCGAACTTCTGGTGCAAGCGATGACATGGCTGTGTGATGAAATKATGTGATGATGTCAGAAGTCGGATATTCATTCTTTTTTTGTGTGTTAATTTTTGATCTCTATTCTTGTACATACTAAACATATTTGAAAGTATTCATTTTTCATTGAAATTAAACATTGTAAATTGAAATTACAATATTTGTGGAGAATTGCGCTCAGAGAATCAGAAAACGCATAATTGAACTCTCAGGTAAACGATTCTGAATTAGATCTGACTTCATTCGGAATTAGATCGAATAATTCGAAATTCGGAATTAGATCTGACTAGAGAAGGTTGTAACTGGGGTATGGGACTTTGATATGAGACCTATATCATTCGAAAGCTGAGGATGAGACATTTTCAAATATATTCAGATTTTGCTGCGGACTTACCAGATTCTAGAAAATCGAGTTTAAAATTTGGCTGAAATTCGAATATTTTGAGGGCGAGATCTCCCCCCTTTCTTATATGCATCGGGTAACCAGTGGCAAGCAGCGACTGGTGGTGTAGCACAGGTCCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>151 144 144 135 94 61 55 50 29 27 22 19 14 13 11 11 7 7 6</canonical_bands>
                <polymorphic_bands>194 151 144 135 94 61 55 29 27 22 19 14 13 11 11 7 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCTTGTCAGATTTTTAACTGC</pcr_primer_p1>
		<pcr_primer_p2>GCAATTCTCCACAAATATTGTAA</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>GATCTTGTCAGATTTTTAACTGCAGTGCGATCTCCGGCGAACTTCTGGTGCAAGCGATGACATGGCTGTGTGATGAAATTATGTGATGATGTCAGAAGTCGGATATTCATTCTTTTTTTGTGTGTTAATTTTTGATCTCTATTCTTGTACATACTAAACATATTTGAAAGTATTCATTTTTCATTGAAATTAAACATTGTAAATTGAAATTACAATATTTGTGGAGAATTGC</canonical_amplicon>
		<polymorphic_amplicon>GATCTTGTCAGATTTTTAACTGCAGTGCGATCTCCGGCGAACTTCTGGTGCAAGCGATGACATGGCTGTGTGATGAAATKATGTGATGATGTCAGAAGTCGGATATTCATTCTTTTTTTGTGTGTTAATTTTTGATCTCTATTCTTGTACATACTAAACATATTTGAAAGTATTCATTTTTCATTGAAATTAAACATTGTAAATTGAAATTACAATATTTGTGGAGAATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27784</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>443057</contig_pos>
        <strand>-</strand>
        <context>TTAACGAAAG[A/T]GATTCAATCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTTTTATTTGGTGAAACTCTTAAATCAAAGTTTGAAACCTTAACGAAAG</left_flank>
        <right_flank>GATTCAATCAAAAAAATCTGGAATCTAAAGGTCGGATCTCATTTACGTCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAATCAGAATTCCAGAACTTTCTGATTTTCTAAATTTCCAAGATCACTTTTTAAAACTTTCCTGTACTCCGAAAGTTCATAAATTCAATCAACACAGAAAGAATAATTTCAGGAAATGCGTTTCAGCTTTTTGTGAAACTTTAACTTCTTGTTCTTCAGAAAATCGCCCGTCGGGGTCCCATGTTCGGTCGGTCGGCTAAATTTCCCGACCGAATGGAAGTCTTAGTTGCCAAACTACAGTAATTATAATAAAAACTGTCAACTTGAGTGACAGGAGACAACTAGGTATTGTTTTTTTTTCTGTCTGTATGTACGGTAAAACCTGCATGAGAAAGTACGTCTTCTCCTATTTCAAACCACTCCGCTCTTCTATTAAAGAGGCCATTCTATTGAAGGGCCAATACAGGTTTTACGGTATATGTTCAAGGCTACAGTAATCCCGATAACAGTTTTTATTTGGTGAAACTCTTAAATCAAAGTTTGAAACCTTAACGAAAGTGATTCAATCAAAAAAATCTGGAATCTAAAGGTCGGATCTCATTTACGTCATCTCCGAAACTTCTCCGTCCGTCGGCCTTGAAACATCATAATAATCCGAAATGCATAATTTTTTGATAAGACTTTGAAACAAAAAAATGAAGAAGAAAAACCGGACTTTTTCGGACAGGAATGGTCAGTTATGGATATATGGAAAAGAGAATTTTGAAGAACGAGTTTTTTGGGTTTTTGAAAAAAAATGGGCATATATGACAATTTTTTTAGTTGAGGGAAAATAAACTGAGAGGGGAATGGTCATTAGACATGTCCTTATGACAAATTATATGAAGAAGTTACTAGTTCCTTAGAAGAAGCCACTTGACAAAACTGTTGAGTGGATGGATTTGTGGCTTTTTTTTTGGTTTATTTGTTAGTCATCTTTCTCTGAATTCTTTTAATCTAAAAGAGAAGGTTCTTTTTCAGAGTATAGAAAGTTTACAGAAAAAAAAGAGAGAATAATTG</canonical>
            <polymorphic>TAAATCAGAATTCCAGAACTTTCTGATTTTCTAAATTTCCAAGATCACTTTTTAAAACTTTCCTGTACTCCGAAAGTTCATAAATTCAATCAACACAGAAAGAATAATTTCAGGAAATGCGTTTCAGCTTTTTGTGAAACTTTAACTTCTTGTTCTTCAGAAAATCGCCCGTCGGGGTCCCATGTTCGGTCGGTCGGCTAAATTTCCCGACCGAATGGAAGTCTTAGTTGCCAAACTACAGTAATTATAATAAAAACTGTCAACTTGAGTGACAGGAGACAACTAGGTATTGTTTTTTTTTCTGTCTGTATGTACGGTAAAACCTGCATGAGAAAGTACGTCTTCTCCTATTTCAAACCACTCCGCTCTTCTATTAAAGAGGCCATTCTATTGAAGGGCCAATACAGGTTTTACGGTATATGTTCAAGGCTACAGTAATCCCGATAACAGTTTTTATTTGGTGAAACTCTTAAATCAAAGTTTGAAACCTTAACGAAAGWGATTCAATCAAAAAAATCTGGAATCTAAAGGTCGGATCTCATTTACGTCATCTCCGAAACTTCTCCGTCCGTCGGCCTTGAAACATCATAATAATCCGAAATGCATAATTTTTTGATAAGACTTTGAAACAAAAAAATGAAGAAGAAAAACCGGACTTTTTCGGACAGGAATGGTCAGTTATGGATATATGGAAAAGAGAATTTTGAAGAACGAGTTTTTTGGGTTTTTGAAAAAAAATGGGCATATATGACAATTTTTTTAGTTGAGGGAAAATAAACTGAGAGGGGAATGGTCATTAGACATGTCCTTATGACAAATTATATGAAGAAGTTACTAGTTCCTTAGAAGAAGCCACTTGACAAAACTGTTGAGTGGATGGATTTGTGGCTTTTTTTTTGGTTTATTTGTTAGTCATCTTTCTCTGAATTCTTTTAATCTAAAAGAGAAGGTTCTTTTTCAGAGTATAGAAAGTTTACAGAAAAAAAAGAGAGAATAATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>354 135 113 103 89 48 47 41 38 20 12</canonical_bands>
                <polymorphic_bands>392 135 113 103 89 48 47 41 20 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGTTTTTATTTGGTGAAACTC</pcr_primer_p1>
		<pcr_primer_p2>TTTCCATATATCCATAACTGACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAGTTTTTATTTGGTGAAACTCTTAAATCAAAGTTTGAAACCTTAACGAAAGTGATTCAATCAAAAAAATCTGGAATCTAAAGGTCGGATCTCATTTACGTCATCTCCGAAACTTCTCCGTCCGTCGGCCTTGAAACATCATAATAATCCGAAATGCATAATTTTTTGATAAGACTTTGAAACAAAAAAATGAAGAAGAAAAACCGGACTTTTTCGGACAGGAATGGTCAGTTATGGATATATGGAAA</canonical_amplicon>
		<polymorphic_amplicon>ACAGTTTTTATTTGGTGAAACTCTTAAATCAAAGTTTGAAACCTTAACGAAAGWGATTCAATCAAAAAAATCTGGAATCTAAAGGTCGGATCTCATTTACGTCATCTCCGAAACTTCTCCGTCCGTCGGCCTTGAAACATCATAATAATCCGAAATGCATAATTTTTTGATAAGACTTTGAAACAAAAAAATGAAGAAGAAAAACCGGACTTTTTCGGACAGGAATGGTCAGTTATGGATATATGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27785</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>443336</contig_pos>
        <strand>-</strand>
        <context>GGAAAATAAA[G/T]WGAGAGGGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAAAAAAAATGGGCATATATGACAATTTTTTTAGTTGAGGGAAAATAAA</left_flank>
        <right_flank>TGAGAGGGGAATGGTCATTAGACATGTCCTTATGACAAATTATATGAAGA</right_flank>
        <qual_score>24</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACTAGGTATTGTTTTTTTTTCTGTCTGTATGTACGGTAAAACCTGCATGAGAAAGTACGTCTTCTCCTATTTCAAACCACTCCGCTCTTCTATTAAAGAGGCCATTCTATTGAAGGGCCAATACAGGTTTTACGGTATATGTTCAAGGCTACAGTAATCCCGATAACAGTTTTTATTTGGTGAAACTCTTAAATCAAAGTTTGAAACCTTAACGAAAGTGATTCAATCAAAAAAATCTGGAATCTAAAGGTCGGATCTCATTTACGTCATCTCCGAAACTTCTCCGTCCGTCGGCCTTGAAACATCATAATAATCCGAAATGCATAATTTTTTGATAAGACTTTGAAACAAAAAAATGAAGAAGAAAAACCGGACTTTTTCGGACAGGAATGGTCAGTTATGGATATATGGAAAAGAGAATTTTGAAGAACGAGTTTTTTGGGTTTTTGAAAAAAAATGGGCATATATGACAATTTTTTTAGTTGAGGGAAAATAAACTGAGAGGGGAATGGTCATTAGACATGTCCTTATGACAAATTATATGAAGAAGTTACTAGTTCCTTAGAAGAAGCCACTTGACAAAACTGTTGAGTGGATGGATTTGTGGCTTTTTTTTTGGTTTATTTGTTAGTCATCTTTCTCTGAATTCTTTTAATCTAAAAGAGAAGGTTCTTTTTCAGAGTATAGAAAGTTTACAGAAAAAAAAGAGAGAATAATTGATCTATGATCCGATAGGAGGTGTATTAGGAAACGGGAATTGTCTTGCATGTTATTAATTATTGGATTCGAGAAATCGAAAGAAAGAGATAAAGAGGAAGGGATTGAAAAAAAAACTATTTGGCCTTTTGGGATTTAAGCTTCCAATTTTTTGAACTTCTTTTTGAGCAATGTCAAGACTCTGTAATTTAAAATACCGTATTTCCACTAATAGATCCCTGCCCCAAACCGTCCACTTTAAGCTCAAACATCTCTTTTCCTATAAAATACATCGAAAATGT</canonical>
            <polymorphic>CAACTAGGTATTGTTTTTTTTTCTGTCTGTATGTACGGTAAAACCTGCATGAGAAAGTACGTCTTCTCCTATTTCAAACCACTCCGCTCTTCTATTAAAGAGGCCATTCTATTGAAGGGCCAATACAGGTTTTACGGTATATGTTCAAGGCTACAGTAATCCCGATAACAGTTTTTATTTGGTGAAACTCTTAAATCAAAGTTTGAAACCTTAACGAAAGTGATTCAATCAAAAAAATCTGGAATCTAAAGGTCGGATCTCATTTACGTCATCTCCGAAACTTCTCCGTCCGTCGGCCTTGAAACATCATAATAATCCGAAATGCATAATTTTTTGATAAGACTTTGAAACAAAAAAATGAAGAAGAAAAACCGGACTTTTTCGGACAGGAATGGTCAGTTATGGATATATGGAAAAGAGAATTTTGAAGAACGAGTTTTTTGGGTTTTTGAAAAAAAATGGGCATATATGACAATTTTTTTAGTTGAGGGAAAATAAAKTGAGAGGGGAATGGTCATTAGACATGTCCTTATGACAAATTATATGAAGAAGTTACTAGTTCCTTAGAAGAAGCCACTTGACAAAACTGTTGAGTGGATGGATTTGTGGCTTTTTTTTTGGTTTATTTGTTAGTCATCTTTCTCTGAATTCTTTTAATCTAAAAGAGAAGGTTCTTTTTCAGAGTATAGAAAGTTTACAGAAAAAAAAGAGAGAATAATTGATCTATGATCCGATAGGAGGTGTATTAGGAAACGGGAATTGTCTTGCATGTTATTAATTATTGGATTCGAGAAATCGAAAGAAAGAGATAAAGAGGAAGGGATTGAAAAAAAAACTATTTGGCCTTTTGGGATTTAAGCTTCCAATTTTTTGAACTTCTTTTTGAGCAATGTCAAGACTCTGTAATTTAAAATACCGTATTTCCACTAATAGATCCCTGCCCCAAACCGTCCACTTTAAGCTCAAACATCTCTTTTCCTATAAAATACATCGAAAATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 437 63</canonical_bands>
                <polymorphic_bands>563 437</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGGAAAAGAGAATTTTGAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTAAAAGAATTCAGAGAAAGATGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATGGAAAAGAGAATTTTGAAGAACGAGTTTTTTGGGTTTTTGAAAAAAAATGGGCATATATGACAATTTTTTTAGTTGAGGGAAAATAAACTGAGAGGGGAATGGTCATTAGACATGTCCTTATGACAAATTATATGAAGAAGTTACTAGTTCCTTAGAAGAAGCCACTTGACAAAACTGTTGAGTGGATGGATTTGTGGCTTTTTTTTTGGTTTATTTGTTAGTCATCTTTCTCTGAATTCTTTTAA</canonical_amplicon>
		<polymorphic_amplicon>TATGGAAAAGAGAATTTTGAAGAACGAGTTTTTTGGGTTTTTGAAAAAAAATGGGCATATATGACAATTTTTTTAGTTGAGGGAAAATAAAKTGAGAGGGGAATGGTCATTAGACATGTCCTTATGACAAATTATATGAAGAAGTTACTAGTTCCTTAGAAGAAGCCACTTGACAAAACTGTTGAGTGGATGGATTTGTGGCTTTTTTTTTGGTTTATTTGTTAGTCATCTTTCTCTGAATTCTTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27786</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>443337</contig_pos>
        <strand>-</strand>
        <context>GAAAATAAAK[A/T]GAGAGGGGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAAAAAATGGGCATATATGACAATTTTTTTAGTTGAGGGAAAATAAAC</left_flank>
        <right_flank>GAGAGGGGAATGGTCATTAGACATGTCCTTATGACAAATTATATGAAGAA</right_flank>
        <qual_score>27</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTAGGTATTGTTTTTTTTTCTGTCTGTATGTACGGTAAAACCTGCATGAGAAAGTACGTCTTCTCCTATTTCAAACCACTCCGCTCTTCTATTAAAGAGGCCATTCTATTGAAGGGCCAATACAGGTTTTACGGTATATGTTCAAGGCTACAGTAATCCCGATAACAGTTTTTATTTGGTGAAACTCTTAAATCAAAGTTTGAAACCTTAACGAAAGTGATTCAATCAAAAAAATCTGGAATCTAAAGGTCGGATCTCATTTACGTCATCTCCGAAACTTCTCCGTCCGTCGGCCTTGAAACATCATAATAATCCGAAATGCATAATTTTTTGATAAGACTTTGAAACAAAAAAATGAAGAAGAAAAACCGGACTTTTTCGGACAGGAATGGTCAGTTATGGATATATGGAAAAGAGAATTTTGAAGAACGAGTTTTTTGGGTTTTTGAAAAAAAATGGGCATATATGACAATTTTTTTAGTTGAGGGAAAATAAACTGAGAGGGGAATGGTCATTAGACATGTCCTTATGACAAATTATATGAAGAAGTTACTAGTTCCTTAGAAGAAGCCACTTGACAAAACTGTTGAGTGGATGGATTTGTGGCTTTTTTTTTGGTTTATTTGTTAGTCATCTTTCTCTGAATTCTTTTAATCTAAAAGAGAAGGTTCTTTTTCAGAGTATAGAAAGTTTACAGAAAAAAAAGAGAGAATAATTGATCTATGATCCGATAGGAGGTGTATTAGGAAACGGGAATTGTCTTGCATGTTATTAATTATTGGATTCGAGAAATCGAAAGAAAGAGATAAAGAGGAAGGGATTGAAAAAAAAACTATTTGGCCTTTTGGGATTTAAGCTTCCAATTTTTTGAACTTCTTTTTGAGCAATGTCAAGACTCTGTAATTTAAAATACCGTATTTCCACTAATAGATCCCTGCCCCAAACCGTCCACTTTAAGCTCAAACATCTCTTTTCCTATAAAATACATCGAAAATGTG</canonical>
            <polymorphic>AACTAGGTATTGTTTTTTTTTCTGTCTGTATGTACGGTAAAACCTGCATGAGAAAGTACGTCTTCTCCTATTTCAAACCACTCCGCTCTTCTATTAAAGAGGCCATTCTATTGAAGGGCCAATACAGGTTTTACGGTATATGTTCAAGGCTACAGTAATCCCGATAACAGTTTTTATTTGGTGAAACTCTTAAATCAAAGTTTGAAACCTTAACGAAAGTGATTCAATCAAAAAAATCTGGAATCTAAAGGTCGGATCTCATTTACGTCATCTCCGAAACTTCTCCGTCCGTCGGCCTTGAAACATCATAATAATCCGAAATGCATAATTTTTTGATAAGACTTTGAAACAAAAAAATGAAGAAGAAAAACCGGACTTTTTCGGACAGGAATGGTCAGTTATGGATATATGGAAAAGAGAATTTTGAAGAACGAGTTTTTTGGGTTTTTGAAAAAAAATGGGCATATATGACAATTTTTTTAGTTGAGGGAAAATAAACWGAGAGGGGAATGGTCATTAGACATGTCCTTATGACAAATTATATGAAGAAGTTACTAGTTCCTTAGAAGAAGCCACTTGACAAAACTGTTGAGTGGATGGATTTGTGGCTTTTTTTTTGGTTTATTTGTTAGTCATCTTTCTCTGAATTCTTTTAATCTAAAAGAGAAGGTTCTTTTTCAGAGTATAGAAAGTTTACAGAAAAAAAAGAGAGAATAATTGATCTATGATCCGATAGGAGGTGTATTAGGAAACGGGAATTGTCTTGCATGTTATTAATTATTGGATTCGAGAAATCGAAAGAAAGAGATAAAGAGGAAGGGATTGAAAAAAAAACTATTTGGCCTTTTGGGATTTAAGCTTCCAATTTTTTGAACTTCTTTTTGAGCAATGTCAAGACTCTGTAATTTAAAATACCGTATTTCCACTAATAGATCCCTGCCCCAAACCGTCCACTTTAAGCTCAAACATCTCTTTTCCTATAAAATACATCGAAAATGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>499 438 63</canonical_bands>
                <polymorphic_bands>562 438</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGGAAAAGAGAATTTTGAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTAAAAGAATTCAGAGAAAGATGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATGGAAAAGAGAATTTTGAAGAACGAGTTTTTTGGGTTTTTGAAAAAAAATGGGCATATATGACAATTTTTTTAGTTGAGGGAAAATAAACTGAGAGGGGAATGGTCATTAGACATGTCCTTATGACAAATTATATGAAGAAGTTACTAGTTCCTTAGAAGAAGCCACTTGACAAAACTGTTGAGTGGATGGATTTGTGGCTTTTTTTTTGGTTTATTTGTTAGTCATCTTTCTCTGAATTCTTTTAA</canonical_amplicon>
		<polymorphic_amplicon>TATGGAAAAGAGAATTTTGAAGAACGAGTTTTTTGGGTTTTTGAAAAAAAATGGGCATATATGACAATTTTTTTAGTTGAGGGAAAATAAACWGAGAGGGGAATGGTCATTAGACATGTCCTTATGACAAATTATATGAAGAAGTTACTAGTTCCTTAGAAGAAGCCACTTGACAAAACTGTTGAGTGGATGGATTTGTGGCTTTTTTTTTGGTTTATTTGTTAGTCATCTTTCTCTGAATTCTTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27787</snp_id>
        <super_contig>c003300895.Contig2</super_contig>
        <contig_pos>489768</contig_pos>
        <strand></strand>
        <context>TTTAGAGATC[A/T]TGAGGATAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGTGTAAATCCCAAAAAAAGAGTAATTTAAAAATCAAATTTTAGAGATC</left_flank>
        <right_flank>TGAGGATAGGAAATATAATGGAATTCGGGAAACGGGCGGTATTTGGGTGG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGATATCAAAAACTGGTCAACTGTTAAAGTTTTGCTGATATTATGATGAAAATTTTGTTAGTTTACAATTTTATGAAATCTCTCACAAAGAGCGAGATATAAGGACTTGAAGGACGTTGGCGGTTTGGGGGGGGGGGGGCGTAACTTCTAATTGGTATCTGAGTTCAAGTGCATTTTTCTTATTCTAGTGTTAAGATACAAAAATTTTGTCTATTAATAAAATAAAGCTCTTGAATTTTTACACATTTTTATAGTTGACAATTTTTTCGTATCTCAAACGTTGAAGAAGTTATAAGCTCTAGAAATCATGGGATTCGGTGGCTAGTCTAATCACAAGTTCAATTTTCAGTTTTTGAATTCTGAATTTTTTTGAATTTTCAGTGATTCTAGATGAGATGAATGGGTGAAACGACACCACACGCACAAAAAATGAAAATCAACAAATTTTTAGTGTAAATCCCAAAAAAAGAGTAATTTAAAAATCAAATTTTAGAGATCATGAGGATAGGAAATATAATGGAATTCGGGAAACGGGCGGTATTTGGGTGGGAAATAAATGACCGGAATCGACAAAGGGTTTCTCGGTTTTTAAAAAGGGAAAATCTAAAAAAAGTAAATATCCGGGGAAGAATAAAGGAACACGCTCTCGCTCATTCTAGACACCTCTCGATATGGGTCCTCCGCTGATCGACTTCGTCGTTTCAGTGCTCCATTGCCACGTGGCGACGCTGGCGGCAAATTCAAAAACTGACTGCTCGACGTCTTTCTAGCCGGACGTGGAGGTAATAGAAGATTCGTTGAGATGACGTCATCGTCTTCTTCGTCAGAAGACGTTGAATCGTGAGGCTCGCGGAAGCGGCCACGATACATTGGTTTAAAACGGAACGATTGTCCGGGAATGATATCCGGACGAGATTGATACCCGGGGACACCTTCTAGAGTTGGAATCTTAGCGGCGGGTTTTGCGTTCGGTGGATCGATCTGTTGTTTTTGAAATCA</canonical>
            <polymorphic>GAGATATCAAAAACTGGTCAACTGTTAAAGTTTTGCTGATATTATGATGAAAATTTTGTTAGTTTACAATTTTATGAAATCTCTCACAAAGAGCGAGATATAAGGACTTGAAGGACGTTGGCGGTTTGGGGGGGGGGGGGCGTAACTTCTAATTGGTATCTGAGTTCAAGTGCATTTTTCTTATTCTAGTGTTAAGATACAAAAATTTTGTCTATTAATAAAATAAAGCTCTTGAATTTTTACACATTTTTATAGTTGACAATTTTTTCGTATCTCAAACGTTGAAGAAGTTATAAGCTCTAGAAATCATGGGATTCGGTGGCTAGTCTAATCACAAGTTCAATTTTCAGTTTTTGAATTCTGAATTTTTTTGAATTTTCAGTGATTCTAGATGAGATGAATGGGTGAAACGACACCACACGCACAAAAAATGAAAATCAACAAATTTTTAGTGTAAATCCCAAAAAAAGAGTAATTTAAAAATCAAATTTTAGAGATCWTGAGGATAGGAAATATAATGGAATTCGGGAAACGGGCGGTATTTGGGTGGGAAATAAATGACCGGAATCGACAAAGGGTTTCTCGGTTTTTAAAAAGGGAAAATCTAAAAAAAGTAAATATCCGGGGAAGAATAAAGGAACACGCTCTCGCTCATTCTAGACACCTCTCGATATGGGTCCTCCGCTGATCGACTTCGTCGTTTCAGTGCTCCATTGCCACGTGGCGACGCTGGCGGCAAATTCAAAAACTGACTGCTCGACGTCTTTCTAGCCGGACGTGGAGGTAATAGAAGATTCGTTGAGATGACGTCATCGTCTTCTTCGTCAGAAGACGTTGAATCGTGAGGCTCGCGGAAGCGGCCACGATACATTGGTTTAAAACGGAACGATTGTCCGGGAATGATATCCGGACGAGATTGATACCCGGGGACACCTTCTAGAGTTGGAATCTTAGCGGCGGGTTTTGCGTTCGGTGGATCGATCTGTTGTTTTTGAAATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 308 191</canonical_bands>
                <polymorphic_bands>692 308</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAAATCAACAAATTTTTAGTGTA</pcr_primer_p1>
		<pcr_primer_p2>TATCGAGAGGTGTCTAGAATGAG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TGAAAATCAACAAATTTTTAGTGTAAATCCCAAAAAAAGAGTAATTTAAAAATCAAATTTTAGAGATCATGAGGATAGGAAATATAATGGAATTCGGGAAACGGGCGGTATTTGGGTGGGAAATAAATGACCGGAATCGACAAAGGGTTTCTCGGTTTTTAAAAAGGGAAAATCTAAAAAAAGTAAATATCCGGGGAAGAATAAAGGAACACGCTCTCGCTCATTCTAGACACCTCTCGATA</canonical_amplicon>
		<polymorphic_amplicon>TGAAAATCAACAAATTTTTAGTGTAAATCCCAAAAAAAGAGTAATTTAAAAATCAAATTTTAGAGATCWTGAGGATAGGAAATATAATGGAATTCGGGAAACGGGCGGTATTTGGGTGGGAAATAAATGACCGGAATCGACAAAGGGTTTCTCGGTTTTTAAAAAGGGAAAATCTAAAAAAAGTAAATATCCGGGGAAGAATAAAGGAACACGCTCTCGCTCATTCTAGACACCTCTCGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27788</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>2330</contig_pos>
        <strand></strand>
        <context>aatttttagc[C/T]atttcaagcc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAGTCATTTTCGGTCAGATTTCCCGCTCTTCGGATATCAATTTTTAGC</left_flank>
        <right_flank>ATTTCAAGCCAATTTTCAGCCATTTTCAGCTCCAAACTCACATTCTCGAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGGGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATGAAGGCGAGGACGACAGCTGTACGCAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGCGATTTTCAGTAAATTCTAGGAAATTTCTAGTGATTTTTTCTGGATTTTTAGTGATTTTTAAAAGAATTTCAAATTATTTTTTTGGAATTATTAGCGGATTTTTAGACCGTTCTGTTCATTCTGCGGACCATTTCTGACTATTTTTAGACCTTTTTGACCAATTTTTAGGCTTATTTGAGCTATTTTAGGTCATTTTCACAATTTTCAGTCTTATTTTAACTATTTTAGGTTGATTTTAAAGTCATTTTCGGTCAGATTTCCCGCTCTTCGGATATCAATTTTTAGCCATTTCAAGCCAATTTTCAGCCATTTTCAGCTCCAAACTCACATTCTCGAAACAATGGAACATCGGTGTCGGCGTACAACGATTTGGCTCTTGTATAATCGTTCAAAATCGTAATATATTCGCCCTTCTTCATACTCTCCTCAATTTTCGACGAGAGGAAAAAGATGAATTTGAATCTGACGATCACTCCGAGAGCGTTTCTTGTCGCATCCGCGTCGTCTTTCCGTTTCAGAACGTCTGCGAAAACGGATTCGGCTTTCAGTTTTGAGTCTTTTATCTGGAAAAATGAGGATTTTTGGGGAGGAAAACCGGCAAAAATGAGCCAAAATCGGTGAATTTCGAGCCAAAAATGAGATTTTAAAGAAATTTTTTAAAACATTTTATTGAAAAAACGACGAGTTTTTTTTCGGGAAATTCGGGGACCATTACTTTGATTTTCTGGATTTTTTTTTCCAGTTTTTTCGCCTATTTTAAAATTGAATTTCGAAAAAAAAAAGAGAA</canonical>
            <polymorphic>AGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGGGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATGAAGGCGAGGACGACAGCTGTACGCAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGCGATTTTCAGTAAATTCTAGGAAATTTCTAGTGATTTTTTCTGGATTTTTAGTGATTTTTAAAAGAATTTCAAATTATTTTTTTGGAATTATTAGCGGATTTTTAGACCGTTCTGTTCATTCTGCGGACCATTTCTGACTATTTTTAGACCTTTTTGACCAATTTTTAGGCTTATTTGAGCTATTTTAGGTCATTTTCACAATTTTCAGTCTTATTTTAACTATTTTAGGTTGATTTTAAAGTCATTTTCGGTCAGATTTCCCGCTCTTCGGATATCAATTTTTAGCYATTTCAAGCCAATTTTCAGCCATTTTCAGCTCCAAACTCACATTCTCGAAACAATGGAACATCGGTGTCGGCGTACAACGATTTGGCTCTTGTATAATCGTTCAAAATCGTAATATATTCGCCCTTCTTCATACTCTCCTCAATTTTCGACGAGAGGAAAAAGATGAATTTGAATCTGACGATCACTCCGAGAGCGTTTCTTGTCGCATCCGCGTCGTCTTTCCGTTTCAGAACGTCTGCGAAAACGGATTCGGCTTTCAGTTTTGAGTCTTTTATCTGGAAAAATGAGGATTTTTGGGGAGGAAAACCGGCAAAAATGAGCCAAAATCGGTGAATTTCGAGCCAAAAATGAGATTTTAAAGAAATTTTTTAAAACATTTTATTGAAAAAACGACGAGTTTTTTTTCGGGAAATTCGGGGACCATTACTTTGATTTTCTGGATTTTTTTTTCCAGTTTTTTCGCCTATTTTAAAATTGAATTTCGAAAAAAAAAAGAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>214 168 158 106 67 58 57 55 55 21 11 10 10 10</canonical_bands>
                <polymorphic_bands>214 168 158 116 67 58 57 55 55 21 11 10 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTACGAAAAATCTCCTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTTCGAGAATGTGAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>381</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGCGATTTTCAGTAAATTCTAGGAAATTTCTAGTGATTTTTTCTGGATTTTTAGTGATTTTTAAAAGAATTTCAAATTATTTTTTTGGAATTATTAGCGGATTTTTAGACCGTTCTGTTCATTCTGCGGACCATTTCTGACTATTTTTAGACCTTTTTGACCAATTTTTAGGCTTATTTGAGCTATTTTAGGTCATTTTCACAATTTTCAGTCTTATTTTAACTATTTTAGGTTGATTTTAAAGTCATTTTCGGTCAGATTTCCCGCTCTTCGGATATCAATTTTTAGCCATTTCAAGCCAATTTTCAGCCATTTTCAGCTCCAAACTCACATTCTCGAAACAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGCGATTTTCAGTAAATTCTAGGAAATTTCTAGTGATTTTTTCTGGATTTTTAGTGATTTTTAAAAGAATTTCAAATTATTTTTTTGGAATTATTAGCGGATTTTTAGACCGTTCTGTTCATTCTGCGGACCATTTCTGACTATTTTTAGACCTTTTTGACCAATTTTTAGGCTTATTTGAGCTATTTTAGGTCATTTTCACAATTTTCAGTCTTATTTTAACTATTTTAGGTTGATTTTAAAGTCATTTTCGGTCAGATTTCCCGCTCTTCGGATATCAATTTTTAGCYATTTCAAGCCAATTTTCAGCCATTTTCAGCTCCAAACTCACATTCTCGAAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27789</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>2621</contig_pos>
        <strand></strand>
        <context>AAAAATGAGG[A/G]TTTTTGGGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAACGGATTCGGCTTTCAGTTTTGAGTCTTTTATCTGGAAAAATGAGG</left_flank>
        <right_flank>TTTTTGGGGAGGAAAACCGGCAAAAATGAGCCAAAATCGGTGAATTTCGA</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGGAATTATTAGCGGATTTTTAGACCGTTCTGTTCATTCTGCGGACCATTTCTGACTATTTTTAGACCTTTTTGACCAATTTTTAGGCTTATTTGAGCTATTTTAGGTCATTTTCACAATTTTCAGTCTTATTTTAACTATTTTAGGTTGATTTTAAAGTCATTTTCGGTCAGATTTCCCGCTCTTCGGATATCAATTTTTAGCCATTTCAAGCCAATTTTCAGCCATTTTCAGCTCCAAACTCACATTCTCGAAACAATGGAACATCGGTGTCGGCGTACAACGATTTGGCTCTTGTATAATCGTTCAAAATCGTAATATATTCGCCCTTCTTCATACTCTCCTCAATTTTCGACGAGAGGAAAAAGATGAATTTGAATCTGACGATCACTCCGAGAGCGTTTCTTGTCGCATCCGCGTCGTCTTTCCGTTTCAGAACGTCTGCGAAAACGGATTCGGCTTTCAGTTTTGAGTCTTTTATCTGGAAAAATGAGGATTTTTGGGGAGGAAAACCGGCAAAAATGAGCCAAAATCGGTGAATTTCGAGCCAAAAATGAGATTTTAAAGAAATTTTTTAAAACATTTTATTGAAAAAACGACGAGTTTTTTTTCGGGAAATTCGGGGACCATTACTTTGATTTTCTGGATTTTTTTTTCCAGTTTTTTCGCCTATTTTAAAATTGAATTTCGAAAAAAAAAAGAGAATTTTGAGCCAAAATCAACTGAAAACTTTACAAAAAATTGGGATTTTCAGCAGAATTTTTGTCCGAATTTCATTAAAAAACGACGAATTTTCCGGGAAATTCTGGGACGATTTTCATGATTTTAGCTATAATTTTCCTCATTTTTGTATAGTTTTTTCGCTGAACTTCGAACAAATTTTGATGAAAATATCGGAATTTTTTGGGGGAAAAATCGGGTGCAAATGGGCTGAAAAATAGCCGTTTTTGAGCCGAAAATTGTTTCTTTTTCGGATTTTTTAGCTATAATTTTTTT</canonical>
            <polymorphic>TTTTTGGAATTATTAGCGGATTTTTAGACCGTTCTGTTCATTCTGCGGACCATTTCTGACTATTTTTAGACCTTTTTGACCAATTTTTAGGCTTATTTGAGCTATTTTAGGTCATTTTCACAATTTTCAGTCTTATTTTAACTATTTTAGGTTGATTTTAAAGTCATTTTCGGTCAGATTTCCCGCTCTTCGGATATCAATTTTTAGCCATTTCAAGCCAATTTTCAGCCATTTTCAGCTCCAAACTCACATTCTCGAAACAATGGAACATCGGTGTCGGCGTACAACGATTTGGCTCTTGTATAATCGTTCAAAATCGTAATATATTCGCCCTTCTTCATACTCTCCTCAATTTTCGACGAGAGGAAAAAGATGAATTTGAATCTGACGATCACTCCGAGAGCGTTTCTTGTCGCATCCGCGTCGTCTTTCCGTTTCAGAACGTCTGCGAAAACGGATTCGGCTTTCAGTTTTGAGTCTTTTATCTGGAAAAATGAGGRTTTTTGGGGAGGAAAACCGGCAAAAATGAGCCAAAATCGGTGAATTTCGAGCCAAAAATGAGATTTTAAAGAAATTTTTTAAAACATTTTATTGAAAAAACGACGAGTTTTTTTTCGGGAAATTCGGGGACCATTACTTTGATTTTCTGGATTTTTTTTTCCAGTTTTTTCGCCTATTTTAAAATTGAATTTCGAAAAAAAAAAGAGAATTTTGAGCCAAAATCAACTGAAAACTTTACAAAAAATTGGGATTTTCAGCAGAATTTTTGTCCGAATTTCATTAAAAAACGACGAATTTTCCGGGAAATTCTGGGACGATTTTCATGATTTTAGCTATAATTTTCCTCATTTTTGTATAGTTTTTTCGCTGAACTTCGAACAAATTTTGATGAAAATATCGGAATTTTTTGGGGGAAAAATCGGGTGCAAATGGGCTGAAAAATAGCCGTTTTTGAGCCGAAAATTGTTTCTTTTTCGGATTTTTTAGCTATAATTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAATCTGACGATCACTCC</pcr_primer_p1>
		<pcr_primer_p2>ATCCAGAAAATCAAAGTAATGGT</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>TTGAATCTGACGATCACTCCGAGAGCGTTTCTTGTCGCATCCGCGTCGTCTTTCCGTTTCAGAACGTCTGCGAAAACGGATTCGGCTTTCAGTTTTGAGTCTTTTATCTGGAAAAATGAGGATTTTTGGGGAGGAAAACCGGCAAAAATGAGCCAAAATCGGTGAATTTCGAGCCAAAAATGAGATTTTAAAGAAATTTTTTAAAACATTTTATTGAAAAAACGACGAGTTTTTTTTCGGGAAATTCGGGGACCATTACTTTGATTTTCTGGAT</canonical_amplicon>
		<polymorphic_amplicon>TTGAATCTGACGATCACTCCGAGAGCGTTTCTTGTCGCATCCGCGTCGTCTTTCCGTTTCAGAACGTCTGCGAAAACGGATTCGGCTTTCAGTTTTGAGTCTTTTATCTGGAAAAATGAGGRTTTTTGGGGAGGAAAACCGGCAAAAATGAGCCAAAATCGGTGAATTTCGAGCCAAAAATGAGATTTTAAAGAAATTTTTTAAAACATTTTATTGAAAAAACGACGAGTTTTTTTTCGGGAAATTCGGGGACCATTACTTTGATTTTCTGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27790</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>6446</contig_pos>
        <strand>+</strand>
        <context>TGAATATCTK[G/T]CATTTCTCAC</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTT</left_flank>
        <right_flank>CATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAGAGGCGTTAATTCCAAATTTTTTGATTAGAAACCCCCTTTTTTAGCCTTTCTAACCCCAAATTCTCACTAACTTCATACTCCACAAACTATCGATGCCACAAATGAACAGCATGATCACATCGCTCTGATCACATCCTAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGCAAATAAACAGATTGGTCTAGTGGTGGATCTGACGAATACCGATCGATATTATAAGAAGACCGAGTGGGCGGATCATG</canonical>
            <polymorphic>TTTAGAGGCGTTAATTCCAAATTTTTTGATTAGAAACCCCCTTTTTTAGCCTTTCTAACCCCAAATTCTCACTAACTTCATACTCCACAAACTATCGATGCCACAAATGAACAGCATGATCACATCGCTCTGATCACATCCTAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTKCATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGCAAATAAACAGATTGGTCTAGTGGTGGATCTGACGAATACCGATCGATATTATAAGAAGACCGAGTGGGCGGATCATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAAAATCCACTTCTGGTCT</pcr_primer_p1>
		<pcr_primer_p2>TATCTCTGTGACGATGATGATTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATA</canonical_amplicon>
		<polymorphic_amplicon>CTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTKCATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27791</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>6477</contig_pos>
        <strand>+</strand>
        <context>CTAGTTTTCA[A/G]GSGATTTYCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCA</left_flank>
        <right_flank>GCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAACCCCCTTTTTTAGCCTTTCTAACCCCAAATTCTCACTAACTTCATACTCCACAAACTATCGATGCCACAAATGAACAGCATGATCACATCGCTCTGATCACATCCTAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGCAAATAAACAGATTGGTCTAGTGGTGGATCTGACGAATACCGATCGATATTATAAGAAGACCGAGTGGGCGGATCATGGGGTTAAGTACCTGTAAGTGGCCCATTTTTG</canonical>
            <polymorphic>AGAAACCCCCTTTTTTAGCCTTTCTAACCCCAAATTCTCACTAACTTCATACTCCACAAACTATCGATGCCACAAATGAACAGCATGATCACATCGCTCTGATCACATCCTAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCARGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGCAAATAAACAGATTGGTCTAGTGGTGGATCTGACGAATACCGATCGATATTATAAGAAGACCGAGTGGGCGGATCATGGGGTTAAGTACCTGTAAGTGGCCCATTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAAAATCCACTTCTGGTCT</pcr_primer_p1>
		<pcr_primer_p2>TATCTCTGTGACGATGATGATTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATA</canonical_amplicon>
		<polymorphic_amplicon>CTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCARGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27792</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>6574</contig_pos>
        <strand>+</strand>
        <context>CCAGACAGGT[A/G]WAAATTCRAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGT</left_flank>
        <right_flank>AAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGATCACATCCTAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGCAAATAAACAGATTGGTCTAGTGGTGGATCTGACGAATACCGATCGATATTATAAGAAGACCGAGTGGGCGGATCATGGGGTTAAGTACCTGTAAGTGGCCCATTTTTGGCCTGGAAAGTTGGAAAATGACCCAAAAATTGTTTAGAAAACTCAATTGTCCCGGTCACGAGGTGAACGAACGCGAGGATTTGGTCCAGGACTTCAT</canonical>
            <polymorphic>TCTGATCACATCCTAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTRAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGCAAATAAACAGATTGGTCTAGTGGTGGATCTGACGAATACCGATCGATATTATAAGAAGACCGAGTGGGCGGATCATGGGGTTAAGTACCTGTAAGTGGCCCATTTTTGGCCTGGAAAGTTGGAAAATGACCCAAAAATTGTTTAGAAAACTCAATTGTCCCGGTCACGAGGTGAACGAACGCGAGGATTTGGTCCAGGACTTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>118 98 92 69 65 60 53 48 45 43 41 41 35 32 31 27 26 21 20 10 8 7 7 3</canonical_bands>
                <polymorphic_bands>118 110 98 92 69 60 53 48 43 41 41 35 32 31 27 26 21 20 10 8 7 7 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCACTGATTTTCACCTAGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TGCGGATGTTTTGAATAATAA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCA</canonical_amplicon>
		<polymorphic_amplicon>TCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTRAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27793</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>6575</contig_pos>
        <strand>+</strand>
        <context>CAGACAGGTR[A/T]AAATTCRAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTG</left_flank>
        <right_flank>AAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGATCACATCCTAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGCAAATAAACAGATTGGTCTAGTGGTGGATCTGACGAATACCGATCGATATTATAAGAAGACCGAGTGGGCGGATCATGGGGTTAAGTACCTGTAAGTGGCCCATTTTTGGCCTGGAAAGTTGGAAAATGACCCAAAAATTGTTTAGAAAACTCAATTGTCCCGGTCACGAGGTGAACGAACGCGAGGATTTGGTCCAGGACTTCATT</canonical>
            <polymorphic>CTGATCACATCCTAAATTCTCTCCTCGAATCGTGATTTGGGTTCCCGGAACTCCTAAAACTCATTTTTCTATTTTCAAAAAAAAAATTTTTTTTGAAATTCTCCAAACCTTCAGTCGGCGATAACCCTGTCACTGTTGGCGGTAGTCTCTCCCCGAAATTCGAATTTTCCTCCATTTTTTACCCTAGAAACATGAAAAATCATTAAAAACCGCCTCAAAATCCACTTCTGGTCTCCTGAAAAAATGATCCAGCTCCTCGACTTGTCCGAGTGTACTACACGACGCTCGCTAAACAACGCGCGCATCGGGATATCGGAGTGTCGTTTGAAATTGTTTTAGTTTTATTTTTTGAATTTTAATTGAATATCTTACATTTCTCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGWAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCAAATTTCCAGATGGAGCATCTACGATAATGTCGGTCGCGACATCGACGGCACTCGCTTCGTTCCATTCAAAACTCCACTCGATTCTTCGTTCTTTCACGGAAAAGACATGCCAGAAGAGCTACAATTCAGTGTTCGATCGCTGATGGAGCTGGCGAAAAGAGCAAATAAACAGATTGGTCTAGTGGTGGATCTGACGAATACCGATCGATATTATAAGAAGACCGAGTGGGCGGATCATGGGGTTAAGTACCTGTAAGTGGCCCATTTTTGGCCTGGAAAGTTGGAAAATGACCCAAAAATTGTTTAGAAAACTCAATTGTCCCGGTCACGAGGTGAACGAACGCGAGGATTTGGTCCAGGACTTCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCACTGATTTTCACCTAGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TGCGGATGTTTTGAATAATAA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGAAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCA</canonical_amplicon>
		<polymorphic_amplicon>TCACTGATTTTCACCTAGTTTTCAGGCGATTTCCAGCTAGATAACATGTCTTATCACCATAATAATCATCATCGTCACAGAGATAACTATAGGTTGCCGGGAAAACGCTTTCCAGACAGGTGWAAATTCAAAAAATCCTAATTTTCAAAAATAAAAAACATTTTTAGCTATTCCGGCTGTAAAAACACCAAATTTCGTTCAATCTAAATCAATTTTTCTCTAATGTTTGAAATTTTATTATTCAAAACATCCGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27794</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>7794</contig_pos>
        <strand>+</strand>
        <context>tttttGAGAG[G/T]AAATTTGACT</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATTTTCAACAGAAATGTTGTCTGAAAAATTAAAAAAAATTTTTTGAGAG</left_flank>
        <right_flank>AAATTTGACTTAAAAATCCCCAGAATTGGCTAAAAATCGATTTTTTAGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATCTAACTAAAAAATGAATTTTTCAGCCTGAAAATTCTCAAAAATTGGGAATTTCAGACTATTTTCAGCGAAAAAGTTGTCTGAAATTGCAATTTTTCGGATTTTGAAAAGAATTGTATCTAAAAATCGAATTTTTAGCTTGAAAATACCTCAAAAATCTAGATTTTTAGACTATTTTCAACAGAAAATTTGGTCTGCAAATTCCATTTTTGCGGTTTTTTGGGAGAAGTTTTGAATTGAAAATTCTCAAAATTTGTTAAAATCAACTTTTTTCTATAAAAAATCCCGCAGAAATCAAGATTTTTAGACGATTTTCAACAGAAATGTTGTCTGAAAAATGAAAAAAAAACTTTTTTGAGAGAAAATTTGACTTAAAAAGTTCCAAAATTTGCTAAAATAAACTTTTTTCTATAAAAAAAATCCCTCTAAAATCAAGATTTTCAGACTATTTTCAACAGAAATGTTGTCTGAAAAATTAAAAAAAATTTTTTGAGAGAAAATTTGACTTAAAAATCCCCAGAATTGGCTAAAAATCGATTTTTTAGCCTGAAAATCCATCAAAAACGGAGATTTTCCGACTATTTTCAGCAGAAATTTTGTCTGAAAATTCCATTTTTCCGCTTTTTTGCAGGAAATTTTGATCTAAAAATCACAAAAATTGGCTGAATTTTGTCTAGAAGACGTTAAAACTGGAAAAGTTCTGATTTTCTTCAATTTTGCAGGATTCGAATACTATCGTGGACATCCAATGGAGCGGGAACACTACAAGGTGTCGCTTTACGAGGCAGAATTGCGAAAAAATCAGAGAAAGAACGAGGAGGCATCTGGAGATTCAGAAGACGTTGTGGAGTCGAAGGATTCAGAAGAGGCGGCGACGAAAGATCCAGAAGACGTGAAAGAAGAGGAATCCGAGGAAAAATGATCTAAATTTGTCATTTTTATCACATTCACCCTTGTTTTTTTTTTGAATTGTTTCTCTATGCTGAAAATTGATTTT</canonical>
            <polymorphic>GAAATCTAACTAAAAAATGAATTTTTCAGCCTGAAAATTCTCAAAAATTGGGAATTTCAGACTATTTTCAGCGAAAAAGTTGTCTGAAATTGCAATTTTTCGGATTTTGAAAAGAATTGTATCTAAAAATCGAATTTTTAGCTTGAAAATACCTCAAAAATCTAGATTTTTAGACTATTTTCAACAGAAAATTTGGTCTGCAAATTCCATTTTTGCGGTTTTTTGGGAGAAGTTTTGAATTGAAAATTCTCAAAATTTGTTAAAATCAACTTTTTTCTATAAAAAATCCCGCAGAAATCAAGATTTTTAGACGATTTTCAACAGAAATGTTGTCTGAAAAATGAAAAAAAAACTTTTTTGAGAGKAAATTTGACTTAAAAAGTTCCAAAATTTGCTAAAATAAACTTTTTTCTATAAAAAAAATCCCTCTAAAATCAAGATTTTCAGACTATTTTCAACAGAAATGTTGTCTGAAAAATTAAAAAAAATTTTTTGAGAGAAAATTTGACTTAAAAATCCCCAGAATTGGCTAAAAATCGATTTTTTAGCCTGAAAATCCATCAAAAACGGAGATTTTCCGACTATTTTCAGCAGAAATTTTGTCTGAAAATTCCATTTTTCCGCTTTTTTGCAGGAAATTTTGATCTAAAAATCACAAAAATTGGCTGAATTTTGTCTAGAAGACGTTAAAACTGGAAAAGTTCTGATTTTCTTCAATTTTGCAGGATTCGAATACTATCGTGGACATCCAATGGAGCGGGAACACTACAAGGTGTCGCTTTACGAGGCAGAATTGCGAAAAAATCAGAGAAAGAACGAGGAGGCATCTGGAGATTCAGAAGACGTTGTGGAGTCGAAGGATTCAGAAGAGGCGGCGACGAAAGATCCAGAAGACGTGAAAGAAGAGGAATCCGAGGAAAAATGATCTAAATTTGTCATTTTTATCACATTCACCCTTGTTTTTTTTTTGAATTGTTTCTCTATGCTGAAAATTGATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAGACTATTTTCAACAGAAATG</pcr_primer_p1>
		<pcr_primer_p2>AACGTCTTCTAGACAAAATTCAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTCAGACTATTTTCAACAGAAATGTTGTCTGAAAAATTAAAAAAAATTTTTTGAGAGAAAATTTGACTTAAAAATCCCCAGAATTGGCTAAAAATCGATTTTTTAGCCTGAAAATCCATCAAAAACGGAGATTTTCCGACTATTTTCAGCAGAAATTTTGTCTGAAAATTCCATTTTTCCGCTTTTTTGCAGGAAATTTTGATCTAAAAATCACAAAAATTGGCTGAATTTTGTCTAGAAGACGTT</canonical_amplicon>
		<polymorphic_amplicon>TTCAGACTATTTTCAACAGAAATGTTGTCTGAAAAATTAAAAAAAATTTTTTGAGAGAAAATTTGACTTAAAAATCCCCAGAATTGGCTAAAAATCGATTTTTTAGCCTGAAAATCCATCAAAAACGGAGATTTTCCGACTATTTTCAGCAGAAATTTTGTCTGAAAATTCCATTTTTCCGCTTTTTTGCAGGAAATTTTGATCTAAAAATCACAAAAATTGGCTGAATTTTGTCTAGAAGACGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27795</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>8254</contig_pos>
        <strand>+</strand>
        <context>KTCACCCTTG[C/T]TTTTTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCCGAGGAAAAATGATCTAAATTTGTCATTTTTATCACATTCACCCTTG</left_flank>
        <right_flank>TTTTTTTTTGAATTGTTTCTCTATGCTGAAAATTGATTTTATTGTCATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATGTTGTCTGAAAAATTAAAAAAAATTTTTTGAGAGAAAATTTGACTTAAAAATCCCCAGAATTGGCTAAAAATCGATTTTTTAGCCTGAAAATCCATCAAAAACGGAGATTTTCCGACTATTTTCAGCAGAAATTTTGTCTGAAAATTCCATTTTTCCGCTTTTTTGCAGGAAATTTTGATCTAAAAATCACAAAAATTGGCTGAATTTTGTCTAGAAGACGTTAAAACTGGAAAAGTTCTGATTTTCTTCAATTTTGCAGGATTCGAATACTATCGTGGACATCCAATGGAGCGGGAACACTACAAGGTGTCGCTTTACGAGGCAGAATTGCGAAAAAATCAGAGAAAGAACGAGGAGGCATCTGGAGATTCAGAAGACGTTGTGGAGTCGAAGGATTCAGAAGAGGCGGCGACGAAAGATCCAGAAGACGTGAAAGAAGAGGAATCCGAGGAAAAATGATCTAAATTTGTCATTTTTATCACATTCACCCTTGTTTTTTTTTTGAATTGTTTCTCTATGCTGAAAATTGATTTTATTGTCATCTATATCCTCCTCAACTATTCGGGTACTACACACAAAAATACACGAATTGTTTTAATAAATTTTTTTTTTCAAAAAATGGATTAAAAACGGAAATGATAAAAATTCCGGGGTGGGAAATTCGAGTTGCCTGGTAGATTGTGATGATCGGTCTGAAAATTGGGAGAAAATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGAAATTTGAGATTTCAAAAAACCAAAATTCGAAAAAAAAATCTGAAATTCAGAATTCTCGGAATTTGAAGAAATTTGAAAAGTCTGGAAATTTTCAGAGTTTCAGAAAAAAAAACTGAAAATCGGAATATTAGAAAAAAATCCAATAAAATTCTGAAATTTTTGAAATTCAGAATTTCTAAAATTCCGCGAAATTCAAATTTTCGAAAATCTGAAAAGAAATTTTATTTATTTAAATTCAGTAAAAAA</canonical>
            <polymorphic>GAAATGTTGTCTGAAAAATTAAAAAAAATTTTTTGAGAGAAAATTTGACTTAAAAATCCCCAGAATTGGCTAAAAATCGATTTTTTAGCCTGAAAATCCATCAAAAACGGAGATTTTCCGACTATTTTCAGCAGAAATTTTGTCTGAAAATTCCATTTTTCCGCTTTTTTGCAGGAAATTTTGATCTAAAAATCACAAAAATTGGCTGAATTTTGTCTAGAAGACGTTAAAACTGGAAAAGTTCTGATTTTCTTCAATTTTGCAGGATTCGAATACTATCGTGGACATCCAATGGAGCGGGAACACTACAAGGTGTCGCTTTACGAGGCAGAATTGCGAAAAAATCAGAGAAAGAACGAGGAGGCATCTGGAGATTCAGAAGACGTTGTGGAGTCGAAGGATTCAGAAGAGGCGGCGACGAAAGATCCAGAAGACGTGAAAGAAGAGGAATCCGAGGAAAAATGATCTAAATTTGTCATTTTTATCACATTCACCCTTGYTTTTTTTTTGAATTGTTTCTCTATGCTGAAAATTGATTTTATTGTCATCTATATCCTCCTCAACTATTCGGGTACTACACACAAAAATACACGAATTGTTTTAATAAATTTTTTTTTTCAAAAAATGGATTAAAAACGGAAATGATAAAAATTCCGGGGTGGGAAATTCGAGTTGCCTGGTAGATTGTGATGATCGGTCTGAAAATTGGGAGAAAATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGAAATTTGAGATTTCAAAAAACCAAAATTCGAAAAAAAAATCTGAAATTCAGAATTCTCGGAATTTGAAGAAATTTGAAAAGTCTGGAAATTTTCAGAGTTTCAGAAAAAAAAACTGAAAATCGGAATATTAGAAAAAAATCCAATAAAATTCTGAAATTTTTGAAATTCAGAATTTCTAAAATTCCGCGAAATTCAAATTTTCGAAAATCTGAAAAGAAATTTTATTTATTTAAATTCAGTAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCAGAGAAAGAACGAGGAG</pcr_primer_p1>
		<pcr_primer_p2>TTTGTGTGTAGTACCCGAATAGT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AATCAGAGAAAGAACGAGGAGGCATCTGGAGATTCAGAAGACGTTGTGGAGTCGAAGGATTCAGAAGAGGCGGCGACGAAAGATCCAGAAGACGTGAAAGAAGAGGAATCCGAGGAAAAATGATCTAAATTTGTCATTTTTATCACATTCACCCTTGTTTTTTTTTTGAATTGTTTCTCTATGCTGAAAATTGATTTTATTGTCATCTATATCCTCCTCAACTATTCGGGTACTACACACAAA</canonical_amplicon>
		<polymorphic_amplicon>AATCAGAGAAAGAACGAGGAGGCATCTGGAGATTCAGAAGACGTTGTGGAGTCGAAGGATTCAGAAGAGGCGGCGACGAAAGATCCAGAAGACGTGAAAGAAGAGGAATCCGAGGAAAAATGATCTAAATTTGTCATTTTTATCACATTCACCCTTGYTTTTTTTTTGAATTGTTTCTCTATGCTGAAAATTGATTTTATTGTCATCTATATCCTCCTCAACTATTCGGGTACTACACACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27796</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>8288</contig_pos>
        <strand></strand>
        <context>TGCTGAAAAT[T/C]GATTTTATTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATCACATTCACCCTTGTTTTTTTTTTGAATTGTTTCTCTATGCTGAAAAT</left_flank>
        <right_flank>GATTTTATTGTCATCTATATCCTCCTCAACTATTCGGGTACTACACACAA</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAGAAAATTTGACTTAAAAATCCCCAGAATTGGCTAAAAATCGATTTTTTAGCCTGAAAATCCATCAAAAACGGAGATTTTCCGACTATTTTCAGCAGAAATTTTGTCTGAAAATTCCATTTTTCCGCTTTTTTGCAGGAAATTTTGATCTAAAAATCACAAAAATTGGCTGAATTTTGTCTAGAAGACGTTAAAACTGGAAAAGTTCTGATTTTCTTCAATTTTGCAGGATTCGAATACTATCGTGGACATCCAATGGAGCGGGAACACTACAAGGTGTCGCTTTACGAGGCAGAATTGCGAAAAAATCAGAGAAAGAACGAGGAGGCATCTGGAGATTCAGAAGACGTTGTGGAGTCGAAGGATTCAGAAGAGGCGGCGACGAAAGATCCAGAAGACGTGAAAGAAGAGGAATCCGAGGAAAAATGATCTAAATTTGTCATTTTTATCACATTCACCCTTGTTTTTTTTTTGAATTGTTTCTCTATGCTGAAAATTGATTTTATTGTCATCTATATCCTCCTCAACTATTCGGGTACTACACACAAAAATACACGAATTGTTTTAATAAATTTTTTTTTTCAAAAAATGGATTAAAAACGGAAATGATAAAAATTCCGGGGTGGGAAATTCGAGTTGCCTGGTAGATTGTGATGATCGGTCTGAAAATTGGGAGAAAATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGAAATTTGAGATTTCAAAAAACCAAAATTCGAAAAAAAAATCTGAAATTCAGAATTCTCGGAATTTGAAGAAATTTGAAAAGTCTGGAAATTTTCAGAGTTTCAGAAAAAAAAACTGAAAATCGGAATATTAGAAAAAAATCCAATAAAATTCTGAAATTTTTGAAATTCAGAATTTCTAAAATTCCGCGAAATTCAAATTTTCGAAAATCTGAAAAGAAATTTTATTTATTTAAATTCAGTAAAAAATTGTAAAAATTTCGGAAAATTAAGAAATTCAGAA</canonical>
            <polymorphic>GAGAGAAAATTTGACTTAAAAATCCCCAGAATTGGCTAAAAATCGATTTTTTAGCCTGAAAATCCATCAAAAACGGAGATTTTCCGACTATTTTCAGCAGAAATTTTGTCTGAAAATTCCATTTTTCCGCTTTTTTGCAGGAAATTTTGATCTAAAAATCACAAAAATTGGCTGAATTTTGTCTAGAAGACGTTAAAACTGGAAAAGTTCTGATTTTCTTCAATTTTGCAGGATTCGAATACTATCGTGGACATCCAATGGAGCGGGAACACTACAAGGTGTCGCTTTACGAGGCAGAATTGCGAAAAAATCAGAGAAAGAACGAGGAGGCATCTGGAGATTCAGAAGACGTTGTGGAGTCGAAGGATTCAGAAGAGGCGGCGACGAAAGATCCAGAAGACGTGAAAGAAGAGGAATCCGAGGAAAAATGATCTAAATTTGTCATTTTTATCACATTCACCCTTGTTTTTTTTTTGAATTGTTTCTCTATGCTGAAAATYGATTTTATTGTCATCTATATCCTCCTCAACTATTCGGGTACTACACACAAAAATACACGAATTGTTTTAATAAATTTTTTTTTTCAAAAAATGGATTAAAAACGGAAATGATAAAAATTCCGGGGTGGGAAATTCGAGTTGCCTGGTAGATTGTGATGATCGGTCTGAAAATTGGGAGAAAATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGAAATTTGAGATTTCAAAAAACCAAAATTCGAAAAAAAAATCTGAAATTCAGAATTCTCGGAATTTGAAGAAATTTGAAAAGTCTGGAAATTTTCAGAGTTTCAGAAAAAAAAACTGAAAATCGGAATATTAGAAAAAAATCCAATAAAATTCTGAAATTTTTGAAATTCAGAATTTCTAAAATTCCGCGAAATTCAAATTTTCGAAAATCTGAAAAGAAATTTTATTTATTTAAATTCAGTAAAAAATTGTAAAAATTTCGGAAAATTAAGAAATTCAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>138 76 72 63 60 47 43 41 39 28 26 23 23 22 22 20 20 17 15 15 13 13 12 11 10 10 10 9 9 9 9 9 9 8 8 8 7 7 7 6 6</canonical_bands>
                <polymorphic_bands>138 83 76 72 60 47 43 41 39 28 26 23 23 22 22 20 17 15 15 13 13 12 11 10 10 10 9 9 9 9 9 9 8 8 8 7 7 7 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCAGAGAAAGAACGAGGAG</pcr_primer_p1>
		<pcr_primer_p2>TCGTGTATTTTTGTGTGTAGTACC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AATCAGAGAAAGAACGAGGAGGCATCTGGAGATTCAGAAGACGTTGTGGAGTCGAAGGATTCAGAAGAGGCGGCGACGAAAGATCCAGAAGACGTGAAAGAAGAGGAATCCGAGGAAAAATGATCTAAATTTGTCATTTTTATCACATTCACCCTTGTTTTTTTTTTGAATTGTTTCTCTATGCTGAAAATTGATTTTATTGTCATCTATATCCTCCTCAACTATTCGGGTACTACACACAAAAATACACGA</canonical_amplicon>
		<polymorphic_amplicon>AATCAGAGAAAGAACGAGGAGGCATCTGGAGATTCAGAAGACGTTGTGGAGTCGAAGGATTCAGAAGAGGCGGCGACGAAAGATCCAGAAGACGTGAAAGAAGAGGAATCCGAGGAAAAATGATCTAAATTTGTCATTTTTATCACATTCACCCTTGTTTTTTTTTTGAATTGTTTCTCTATGCTGAAAATYGATTTTATTGTCATCTATATCCTCCTCAACTATTCGGGTACTACACACAAAAATACACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27797</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>8358</contig_pos>
        <strand></strand>
        <context>AATTGtttta[A/T]taaatttttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCTCCTCAACTATTCGGGTACTACACACAAAAATACACGAATTGTTTTA</left_flank>
        <right_flank>TAAATTTTTTTTTTCAAAAAATGGATTAAAAACGGAAATGATAAAAATTC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACGGAGATTTTCCGACTATTTTCAGCAGAAATTTTGTCTGAAAATTCCATTTTTCCGCTTTTTTGCAGGAAATTTTGATCTAAAAATCACAAAAATTGGCTGAATTTTGTCTAGAAGACGTTAAAACTGGAAAAGTTCTGATTTTCTTCAATTTTGCAGGATTCGAATACTATCGTGGACATCCAATGGAGCGGGAACACTACAAGGTGTCGCTTTACGAGGCAGAATTGCGAAAAAATCAGAGAAAGAACGAGGAGGCATCTGGAGATTCAGAAGACGTTGTGGAGTCGAAGGATTCAGAAGAGGCGGCGACGAAAGATCCAGAAGACGTGAAAGAAGAGGAATCCGAGGAAAAATGATCTAAATTTGTCATTTTTATCACATTCACCCTTGTTTTTTTTTTGAATTGTTTCTCTATGCTGAAAATTGATTTTATTGTCATCTATATCCTCCTCAACTATTCGGGTACTACACACAAAAATACACGAATTGTTTTAATAAATTTTTTTTTTCAAAAAATGGATTAAAAACGGAAATGATAAAAATTCCGGGGTGGGAAATTCGAGTTGCCTGGTAGATTGTGATGATCGGTCTGAAAATTGGGAGAAAATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGAAATTTGAGATTTCAAAAAACCAAAATTCGAAAAAAAAATCTGAAATTCAGAATTCTCGGAATTTGAAGAAATTTGAAAAGTCTGGAAATTTTCAGAGTTTCAGAAAAAAAAACTGAAAATCGGAATATTAGAAAAAAATCCAATAAAATTCTGAAATTTTTGAAATTCAGAATTTCTAAAATTCCGCGAAATTCAAATTTTCGAAAATCTGAAAAGAAATTTTATTTATTTAAATTCAGTAAAAAATTGTAAAAATTTCGGAAAATTAAGAAATTCAGAAGTTCTAGAATTCAGAAATTTGGAAATTCAGAAATTCAGAAATTCAGTAAGTCAGAAATTCAGAAATTCAG</canonical>
            <polymorphic>AAACGGAGATTTTCCGACTATTTTCAGCAGAAATTTTGTCTGAAAATTCCATTTTTCCGCTTTTTTGCAGGAAATTTTGATCTAAAAATCACAAAAATTGGCTGAATTTTGTCTAGAAGACGTTAAAACTGGAAAAGTTCTGATTTTCTTCAATTTTGCAGGATTCGAATACTATCGTGGACATCCAATGGAGCGGGAACACTACAAGGTGTCGCTTTACGAGGCAGAATTGCGAAAAAATCAGAGAAAGAACGAGGAGGCATCTGGAGATTCAGAAGACGTTGTGGAGTCGAAGGATTCAGAAGAGGCGGCGACGAAAGATCCAGAAGACGTGAAAGAAGAGGAATCCGAGGAAAAATGATCTAAATTTGTCATTTTTATCACATTCACCCTTGTTTTTTTTTTGAATTGTTTCTCTATGCTGAAAATTGATTTTATTGTCATCTATATCCTCCTCAACTATTCGGGTACTACACACAAAAATACACGAATTGTTTTAWTAAATTTTTTTTTTCAAAAAATGGATTAAAAACGGAAATGATAAAAATTCCGGGGTGGGAAATTCGAGTTGCCTGGTAGATTGTGATGATCGGTCTGAAAATTGGGAGAAAATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGAAATTTGAGATTTCAAAAAACCAAAATTCGAAAAAAAAATCTGAAATTCAGAATTCTCGGAATTTGAAGAAATTTGAAAAGTCTGGAAATTTTCAGAGTTTCAGAAAAAAAAACTGAAAATCGGAATATTAGAAAAAAATCCAATAAAATTCTGAAATTTTTGAAATTCAGAATTTCTAAAATTCCGCGAAATTCAAATTTTCGAAAATCTGAAAAGAAATTTTATTTATTTAAATTCAGTAAAAAATTGTAAAAATTTCGGAAAATTAAGAAATTCAGAAGTTCTAGAATTCAGAAATTTGGAAATTCAGAAATTCAGAAATTCAGTAAGTCAGAAATTCAGAAATTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>374 354 123 84 36 29</canonical_bands>
                <polymorphic_bands>403 354 123 84 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAATTGTTTCTCTATGCTGAA</pcr_primer_p1>
		<pcr_primer_p2>TCCGAATTTTTCAAACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TGAATTGTTTCTCTATGCTGAAAATTGATTTTATTGTCATCTATATCCTCCTCAACTATTCGGGTACTACACACAAAAATACACGAATTGTTTTAATAAATTTTTTTTTTCAAAAAATGGATTAAAAACGGAAATGATAAAAATTCCGGGGTGGGAAATTCGAGTTGCCTGGTAGATTGTGATGATCGGTCTGAAAATTGGGAGAAAATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGA</canonical_amplicon>
		<polymorphic_amplicon>TGAATTGTTTCTCTATGCTGAAAATTGATTTTATTGTCATCTATATCCTCCTCAACTATTCGGGTACTACACACAAAAATACACGAATTGTTTTAWTAAATTTTTTTTTTCAAAAAATGGATTAAAAACGGAAATGATAAAAATTCCGGGGTGGGAAATTCGAGTTGCCTGGTAGATTGTGATGATCGGTCTGAAAATTGGGAGAAAATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27798</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>8516</contig_pos>
        <strand></strand>
        <context>GGAAATTTGA[G/A]AWWTCAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAAAATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGAAATTTGA</left_flank>
        <right_flank>ATTTCAAAAAACCAAAATTCGAAAAAAAAATCTGAAATTCAGAATTCTCG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGGATTCGAATACTATCGTGGACATCCAATGGAGCGGGAACACTACAAGGTGTCGCTTTACGAGGCAGAATTGCGAAAAAATCAGAGAAAGAACGAGGAGGCATCTGGAGATTCAGAAGACGTTGTGGAGTCGAAGGATTCAGAAGAGGCGGCGACGAAAGATCCAGAAGACGTGAAAGAAGAGGAATCCGAGGAAAAATGATCTAAATTTGTCATTTTTATCACATTCACCCTTGTTTTTTTTTTGAATTGTTTCTCTATGCTGAAAATTGATTTTATTGTCATCTATATCCTCCTCAACTATTCGGGTACTACACACAAAAATACACGAATTGTTTTAATAAATTTTTTTTTTCAAAAAATGGATTAAAAACGGAAATGATAAAAATTCCGGGGTGGGAAATTCGAGTTGCCTGGTAGATTGTGATGATCGGTCTGAAAATTGGGAGAAAATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGAAATTTGAGATTTCAAAAAACCAAAATTCGAAAAAAAAATCTGAAATTCAGAATTCTCGGAATTTGAAGAAATTTGAAAAGTCTGGAAATTTTCAGAGTTTCAGAAAAAAAAACTGAAAATCGGAATATTAGAAAAAAATCCAATAAAATTCTGAAATTTTTGAAATTCAGAATTTCTAAAATTCCGCGAAATTCAAATTTTCGAAAATCTGAAAAGAAATTTTATTTATTTAAATTCAGTAAAAAATTGTAAAAATTTCGGAAAATTAAGAAATTCAGAAGTTCTAGAATTCAGAAATTTGGAAATTCAGAAATTCAGAAATTCAGTAAGTCAGAAATTCAGAAATTCAGAAGTTCTGAAATTCCGAAAGTCAGAAATTCAGAAATTCTAGAATTCAGAAATTCGGAAGTACTGAAATTTGGAAATTCAGAAATTCATAAGTTCTGGAATTCAGGAATTCAGGAATTCGGAAATTCAGAAATTGGGAAATTCAGAAACTCAGAAATTC</canonical>
            <polymorphic>CAGGATTCGAATACTATCGTGGACATCCAATGGAGCGGGAACACTACAAGGTGTCGCTTTACGAGGCAGAATTGCGAAAAAATCAGAGAAAGAACGAGGAGGCATCTGGAGATTCAGAAGACGTTGTGGAGTCGAAGGATTCAGAAGAGGCGGCGACGAAAGATCCAGAAGACGTGAAAGAAGAGGAATCCGAGGAAAAATGATCTAAATTTGTCATTTTTATCACATTCACCCTTGTTTTTTTTTTGAATTGTTTCTCTATGCTGAAAATTGATTTTATTGTCATCTATATCCTCCTCAACTATTCGGGTACTACACACAAAAATACACGAATTGTTTTAATAAATTTTTTTTTTCAAAAAATGGATTAAAAACGGAAATGATAAAAATTCCGGGGTGGGAAATTCGAGTTGCCTGGTAGATTGTGATGATCGGTCTGAAAATTGGGAGAAAATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGAAATTTGARATTTCAAAAAACCAAAATTCGAAAAAAAAATCTGAAATTCAGAATTCTCGGAATTTGAAGAAATTTGAAAAGTCTGGAAATTTTCAGAGTTTCAGAAAAAAAAACTGAAAATCGGAATATTAGAAAAAAATCCAATAAAATTCTGAAATTTTTGAAATTCAGAATTTCTAAAATTCCGCGAAATTCAAATTTTCGAAAATCTGAAAAGAAATTTTATTTATTTAAATTCAGTAAAAAATTGTAAAAATTTCGGAAAATTAAGAAATTCAGAAGTTCTAGAATTCAGAAATTTGGAAATTCAGAAATTCAGAAATTCAGTAAGTCAGAAATTCAGAAATTCAGAAGTTCTGAAATTCCGAAAGTCAGAAATTCAGAAATTCTAGAATTCAGAAATTCGGAAGTACTGAAATTTGGAAATTCAGAAATTCATAAGTTCTGGAATTCAGGAATTCAGGAATTCGGAAATTCAGAAATTGGGAAATTCAGAAACTCAGAAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACACACAAAAATACACGAATTG</pcr_primer_p1>
		<pcr_primer_p2>TCCAGACTTTTCAAATTTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>TACACACAAAAATACACGAATTGTTTTAATAAATTTTTTTTTTCAAAAAATGGATTAAAAACGGAAATGATAAAAATTCCGGGGTGGGAAATTCGAGTTGCCTGGTAGATTGTGATGATCGGTCTGAAAATTGGGAGAAAATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGAAATTTGAGATTTCAAAAAACCAAAATTCGAAAAAAAAATCTGAAATTCAGAATTCTCGGAATTTGAAGAAATTTGAAAAGTCTGGA</canonical_amplicon>
		<polymorphic_amplicon>TACACACAAAAATACACGAATTGTTTTAATAAATTTTTTTTTTCAAAAAATGGATTAAAAACGGAAATGATAAAAATTCCGGGGTGGGAAATTCGAGTTGCCTGGTAGATTGTGATGATCGGTCTGAAAATTGGGAGAAAATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGAAATTTGARATTTCAAAAAACCAAAATTCGAAAAAAAAATCTGAAATTCAGAATTCTCGGAATTTGAAGAAATTTGAAAAGTCTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27799</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>8518</contig_pos>
        <strand></strand>
        <context>AAATTTGARA[T/A]WTCAAAAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGAAATTTGAGA</left_flank>
        <right_flank>TTCAAAAAACCAAAATTCGAAAAAAAAATCTGAAATTCAGAATTCTCGGA</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATTCGAATACTATCGTGGACATCCAATGGAGCGGGAACACTACAAGGTGTCGCTTTACGAGGCAGAATTGCGAAAAAATCAGAGAAAGAACGAGGAGGCATCTGGAGATTCAGAAGACGTTGTGGAGTCGAAGGATTCAGAAGAGGCGGCGACGAAAGATCCAGAAGACGTGAAAGAAGAGGAATCCGAGGAAAAATGATCTAAATTTGTCATTTTTATCACATTCACCCTTGTTTTTTTTTTGAATTGTTTCTCTATGCTGAAAATTGATTTTATTGTCATCTATATCCTCCTCAACTATTCGGGTACTACACACAAAAATACACGAATTGTTTTAATAAATTTTTTTTTTCAAAAAATGGATTAAAAACGGAAATGATAAAAATTCCGGGGTGGGAAATTCGAGTTGCCTGGTAGATTGTGATGATCGGTCTGAAAATTGGGAGAAAATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGAAATTTGAGATTTCAAAAAACCAAAATTCGAAAAAAAAATCTGAAATTCAGAATTCTCGGAATTTGAAGAAATTTGAAAAGTCTGGAAATTTTCAGAGTTTCAGAAAAAAAAACTGAAAATCGGAATATTAGAAAAAAATCCAATAAAATTCTGAAATTTTTGAAATTCAGAATTTCTAAAATTCCGCGAAATTCAAATTTTCGAAAATCTGAAAAGAAATTTTATTTATTTAAATTCAGTAAAAAATTGTAAAAATTTCGGAAAATTAAGAAATTCAGAAGTTCTAGAATTCAGAAATTTGGAAATTCAGAAATTCAGAAATTCAGTAAGTCAGAAATTCAGAAATTCAGAAGTTCTGAAATTCCGAAAGTCAGAAATTCAGAAATTCTAGAATTCAGAAATTCGGAAGTACTGAAATTTGGAAATTCAGAAATTCATAAGTTCTGGAATTCAGGAATTCAGGAATTCGGAAATTCAGAAATTGGGAAATTCAGAAACTCAGAAATTCAA</canonical>
            <polymorphic>GGATTCGAATACTATCGTGGACATCCAATGGAGCGGGAACACTACAAGGTGTCGCTTTACGAGGCAGAATTGCGAAAAAATCAGAGAAAGAACGAGGAGGCATCTGGAGATTCAGAAGACGTTGTGGAGTCGAAGGATTCAGAAGAGGCGGCGACGAAAGATCCAGAAGACGTGAAAGAAGAGGAATCCGAGGAAAAATGATCTAAATTTGTCATTTTTATCACATTCACCCTTGTTTTTTTTTTGAATTGTTTCTCTATGCTGAAAATTGATTTTATTGTCATCTATATCCTCCTCAACTATTCGGGTACTACACACAAAAATACACGAATTGTTTTAATAAATTTTTTTTTTCAAAAAATGGATTAAAAACGGAAATGATAAAAATTCCGGGGTGGGAAATTCGAGTTGCCTGGTAGATTGTGATGATCGGTCTGAAAATTGGGAGAAAATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGAAATTTGAGAWTTCAAAAAACCAAAATTCGAAAAAAAAATCTGAAATTCAGAATTCTCGGAATTTGAAGAAATTTGAAAAGTCTGGAAATTTTCAGAGTTTCAGAAAAAAAAACTGAAAATCGGAATATTAGAAAAAAATCCAATAAAATTCTGAAATTTTTGAAATTCAGAATTTCTAAAATTCCGCGAAATTCAAATTTTCGAAAATCTGAAAAGAAATTTTATTTATTTAAATTCAGTAAAAAATTGTAAAAATTTCGGAAAATTAAGAAATTCAGAAGTTCTAGAATTCAGAAATTTGGAAATTCAGAAATTCAGAAATTCAGTAAGTCAGAAATTCAGAAATTCAGAAGTTCTGAAATTCCGAAAGTCAGAAATTCAGAAATTCTAGAATTCAGAAATTCGGAAGTACTGAAATTTGGAAATTCAGAAATTCATAAGTTCTGGAATTCAGGAATTCAGGAATTCGGAAATTCAGAAATTGGGAAATTCAGAAACTCAGAAATTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACACACAAAAATACACGAATTG</pcr_primer_p1>
		<pcr_primer_p2>TCCAGACTTTTCAAATTTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>TACACACAAAAATACACGAATTGTTTTAATAAATTTTTTTTTTCAAAAAATGGATTAAAAACGGAAATGATAAAAATTCCGGGGTGGGAAATTCGAGTTGCCTGGTAGATTGTGATGATCGGTCTGAAAATTGGGAGAAAATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGAAATTTGAGATTTCAAAAAACCAAAATTCGAAAAAAAAATCTGAAATTCAGAATTCTCGGAATTTGAAGAAATTTGAAAAGTCTGGA</canonical_amplicon>
		<polymorphic_amplicon>TACACACAAAAATACACGAATTGTTTTAATAAATTTTTTTTTTCAAAAAATGGATTAAAAACGGAAATGATAAAAATTCCGGGGTGGGAAATTCGAGTTGCCTGGTAGATTGTGATGATCGGTCTGAAAATTGGGAGAAAATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGAAATTTGAGAWTTCAAAAAACCAAAATTCGAAAAAAAAATCTGAAATTCAGAATTCTCGGAATTTGAAGAAATTTGAAAAGTCTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27800</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>8519</contig_pos>
        <strand>+</strand>
        <context>AATTTGARAW[A/T]TCAAAAAACC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGAAATTTGAGAT</left_flank>
        <right_flank>TCAAAAAACCAAAATTCGAAAAAAAAATCTGAAATTCAGAATTCTCGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTCGAATACTATCGTGGACATCCAATGGAGCGGGAACACTACAAGGTGTCGCTTTACGAGGCAGAATTGCGAAAAAATCAGAGAAAGAACGAGGAGGCATCTGGAGATTCAGAAGACGTTGTGGAGTCGAAGGATTCAGAAGAGGCGGCGACGAAAGATCCAGAAGACGTGAAAGAAGAGGAATCCGAGGAAAAATGATCTAAATTTGTCATTTTTATCACATTCACCCTTGTTTTTTTTTTGAATTGTTTCTCTATGCTGAAAATTGATTTTATTGTCATCTATATCCTCCTCAACTATTCGGGTACTACACACAAAAATACACGAATTGTTTTAATAAATTTTTTTTTTCAAAAAATGGATTAAAAACGGAAATGATAAAAATTCCGGGGTGGGAAATTCGAGTTGCCTGGTAGATTGTGATGATCGGTCTGAAAATTGGGAGAAAATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGAAATTTGAGATTTCAAAAAACCAAAATTCGAAAAAAAAATCTGAAATTCAGAATTCTCGGAATTTGAAGAAATTTGAAAAGTCTGGAAATTTTCAGAGTTTCAGAAAAAAAAACTGAAAATCGGAATATTAGAAAAAAATCCAATAAAATTCTGAAATTTTTGAAATTCAGAATTTCTAAAATTCCGCGAAATTCAAATTTTCGAAAATCTGAAAAGAAATTTTATTTATTTAAATTCAGTAAAAAATTGTAAAAATTTCGGAAAATTAAGAAATTCAGAAGTTCTAGAATTCAGAAATTTGGAAATTCAGAAATTCAGAAATTCAGTAAGTCAGAAATTCAGAAATTCAGAAGTTCTGAAATTCCGAAAGTCAGAAATTCAGAAATTCTAGAATTCAGAAATTCGGAAGTACTGAAATTTGGAAATTCAGAAATTCATAAGTTCTGGAATTCAGGAATTCAGGAATTCGGAAATTCAGAAATTGGGAAATTCAGAAACTCAGAAATTCAAA</canonical>
            <polymorphic>GATTCGAATACTATCGTGGACATCCAATGGAGCGGGAACACTACAAGGTGTCGCTTTACGAGGCAGAATTGCGAAAAAATCAGAGAAAGAACGAGGAGGCATCTGGAGATTCAGAAGACGTTGTGGAGTCGAAGGATTCAGAAGAGGCGGCGACGAAAGATCCAGAAGACGTGAAAGAAGAGGAATCCGAGGAAAAATGATCTAAATTTGTCATTTTTATCACATTCACCCTTGTTTTTTTTTTGAATTGTTTCTCTATGCTGAAAATTGATTTTATTGTCATCTATATCCTCCTCAACTATTCGGGTACTACACACAAAAATACACGAATTGTTTTAATAAATTTTTTTTTTCAAAAAATGGATTAAAAACGGAAATGATAAAAATTCCGGGGTGGGAAATTCGAGTTGCCTGGTAGATTGTGATGATCGGTCTGAAAATTGGGAGAAAATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGAAATTTGAGATWTCAAAAAACCAAAATTCGAAAAAAAAATCTGAAATTCAGAATTCTCGGAATTTGAAGAAATTTGAAAAGTCTGGAAATTTTCAGAGTTTCAGAAAAAAAAACTGAAAATCGGAATATTAGAAAAAAATCCAATAAAATTCTGAAATTTTTGAAATTCAGAATTTCTAAAATTCCGCGAAATTCAAATTTTCGAAAATCTGAAAAGAAATTTTATTTATTTAAATTCAGTAAAAAATTGTAAAAATTTCGGAAAATTAAGAAATTCAGAAGTTCTAGAATTCAGAAATTTGGAAATTCAGAAATTCAGAAATTCAGTAAGTCAGAAATTCAGAAATTCAGAAGTTCTGAAATTCCGAAAGTCAGAAATTCAGAAATTCTAGAATTCAGAAATTCGGAAGTACTGAAATTTGGAAATTCAGAAATTCATAAGTTCTGGAATTCAGGAATTCAGGAATTCGGAAATTCAGAAATTGGGAAATTCAGAAACTCAGAAATTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACACACAAAAATACACGAATTG</pcr_primer_p1>
		<pcr_primer_p2>TCCAGACTTTTCAAATTTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>TACACACAAAAATACACGAATTGTTTTAATAAATTTTTTTTTTCAAAAAATGGATTAAAAACGGAAATGATAAAAATTCCGGGGTGGGAAATTCGAGTTGCCTGGTAGATTGTGATGATCGGTCTGAAAATTGGGAGAAAATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGAAATTTGAGATTTCAAAAAACCAAAATTCGAAAAAAAAATCTGAAATTCAGAATTCTCGGAATTTGAAGAAATTTGAAAAGTCTGGA</canonical_amplicon>
		<polymorphic_amplicon>TACACACAAAAATACACGAATTGTTTTAATAAATTTTTTTTTTCAAAAAATGGATTAAAAACGGAAATGATAAAAATTCCGGGGTGGGAAATTCGAGTTGCCTGGTAGATTGTGATGATCGGTCTGAAAATTGGGAGAAAATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGAAATTTGAGATWTCAAAAAACCAAAATTCGAAAAAAAAATCTGAAATTCAGAATTCTCGGAATTTGAAGAAATTTGAAAAGTCTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27801</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>8537</contig_pos>
        <strand></strand>
        <context>ACCAAAATTC[G/A]AAAAAAAART</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAAAAAGTTTGAAAAATTCGGAAATTTGAGATTTCAAAAAACCAAAATTC</left_flank>
        <right_flank>AAAAAAAAATCTGAAATTCAGAATTCTCGGAATTTGAAGAAATTTGAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACATCCAATGGAGCGGGAACACTACAAGGTGTCGCTTTACGAGGCAGAATTGCGAAAAAATCAGAGAAAGAACGAGGAGGCATCTGGAGATTCAGAAGACGTTGTGGAGTCGAAGGATTCAGAAGAGGCGGCGACGAAAGATCCAGAAGACGTGAAAGAAGAGGAATCCGAGGAAAAATGATCTAAATTTGTCATTTTTATCACATTCACCCTTGTTTTTTTTTTGAATTGTTTCTCTATGCTGAAAATTGATTTTATTGTCATCTATATCCTCCTCAACTATTCGGGTACTACACACAAAAATACACGAATTGTTTTAATAAATTTTTTTTTTCAAAAAATGGATTAAAAACGGAAATGATAAAAATTCCGGGGTGGGAAATTCGAGTTGCCTGGTAGATTGTGATGATCGGTCTGAAAATTGGGAGAAAATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGAAATTTGAGATTTCAAAAAACCAAAATTCGAAAAAAAAATCTGAAATTCAGAATTCTCGGAATTTGAAGAAATTTGAAAAGTCTGGAAATTTTCAGAGTTTCAGAAAAAAAAACTGAAAATCGGAATATTAGAAAAAAATCCAATAAAATTCTGAAATTTTTGAAATTCAGAATTTCTAAAATTCCGCGAAATTCAAATTTTCGAAAATCTGAAAAGAAATTTTATTTATTTAAATTCAGTAAAAAATTGTAAAAATTTCGGAAAATTAAGAAATTCAGAAGTTCTAGAATTCAGAAATTTGGAAATTCAGAAATTCAGAAATTCAGTAAGTCAGAAATTCAGAAATTCAGAAGTTCTGAAATTCCGAAAGTCAGAAATTCAGAAATTCTAGAATTCAGAAATTCGGAAGTACTGAAATTTGGAAATTCAGAAATTCATAAGTTCTGGAATTCAGGAATTCAGGAATTCGGAAATTCAGAAATTGGGAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAAATCAGTAA</canonical>
            <polymorphic>GACATCCAATGGAGCGGGAACACTACAAGGTGTCGCTTTACGAGGCAGAATTGCGAAAAAATCAGAGAAAGAACGAGGAGGCATCTGGAGATTCAGAAGACGTTGTGGAGTCGAAGGATTCAGAAGAGGCGGCGACGAAAGATCCAGAAGACGTGAAAGAAGAGGAATCCGAGGAAAAATGATCTAAATTTGTCATTTTTATCACATTCACCCTTGTTTTTTTTTTGAATTGTTTCTCTATGCTGAAAATTGATTTTATTGTCATCTATATCCTCCTCAACTATTCGGGTACTACACACAAAAATACACGAATTGTTTTAATAAATTTTTTTTTTCAAAAAATGGATTAAAAACGGAAATGATAAAAATTCCGGGGTGGGAAATTCGAGTTGCCTGGTAGATTGTGATGATCGGTCTGAAAATTGGGAGAAAATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGAAATTTGAGATTTCAAAAAACCAAAATTCRAAAAAAAAATCTGAAATTCAGAATTCTCGGAATTTGAAGAAATTTGAAAAGTCTGGAAATTTTCAGAGTTTCAGAAAAAAAAACTGAAAATCGGAATATTAGAAAAAAATCCAATAAAATTCTGAAATTTTTGAAATTCAGAATTTCTAAAATTCCGCGAAATTCAAATTTTCGAAAATCTGAAAAGAAATTTTATTTATTTAAATTCAGTAAAAAATTGTAAAAATTTCGGAAAATTAAGAAATTCAGAAGTTCTAGAATTCAGAAATTTGGAAATTCAGAAATTCAGAAATTCAGTAAGTCAGAAATTCAGAAATTCAGAAGTTCTGAAATTCCGAAAGTCAGAAATTCAGAAATTCTAGAATTCAGAAATTCGGAAGTACTGAAATTTGGAAATTCAGAAATTCATAAGTTCTGGAATTCAGGAATTCAGGAATTCGGAAATTCAGAAATTGGGAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAAATCAGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>498 328 174</canonical_bands>
                <polymorphic_bands>672 328</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>327 274 174 113 112</canonical_bands>
                <polymorphic_bands>327 287 274 112</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACACACAAAAATACACGAATTG</pcr_primer_p1>
		<pcr_primer_p2>TCCAGACTTTTCAAATTTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>TACACACAAAAATACACGAATTGTTTTAATAAATTTTTTTTTTCAAAAAATGGATTAAAAACGGAAATGATAAAAATTCCGGGGTGGGAAATTCGAGTTGCCTGGTAGATTGTGATGATCGGTCTGAAAATTGGGAGAAAATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGAAATTTGAGATTTCAAAAAACCAAAATTCGAAAAAAAAATCTGAAATTCAGAATTCTCGGAATTTGAAGAAATTTGAAAAGTCTGGA</canonical_amplicon>
		<polymorphic_amplicon>TACACACAAAAATACACGAATTGTTTTAATAAATTTTTTTTTTCAAAAAATGGATTAAAAACGGAAATGATAAAAATTCCGGGGTGGGAAATTCGAGTTGCCTGGTAGATTGTGATGATCGGTCTGAAAATTGGGAGAAAATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGAAATTTGAGATTTCAAAAAACCAAAATTCRAAAAAAAAATCTGAAATTCAGAATTCTCGGAATTTGAAGAAATTTGAAAAGTCTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27802</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>8546</contig_pos>
        <strand>+</strand>
        <context>CRAAAAAAAA[A/G]TCTGAAATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAAAATTCGGAAATTTGAGATTTCAAAAAACCAAAATTCGAAAAAAAA</left_flank>
        <right_flank>TCTGAAATTCAGAATTCTCGGAATTTGAAGAAATTTGAAAAGTCTGGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAGCGGGAACACTACAAGGTGTCGCTTTACGAGGCAGAATTGCGAAAAAATCAGAGAAAGAACGAGGAGGCATCTGGAGATTCAGAAGACGTTGTGGAGTCGAAGGATTCAGAAGAGGCGGCGACGAAAGATCCAGAAGACGTGAAAGAAGAGGAATCCGAGGAAAAATGATCTAAATTTGTCATTTTTATCACATTCACCCTTGTTTTTTTTTTGAATTGTTTCTCTATGCTGAAAATTGATTTTATTGTCATCTATATCCTCCTCAACTATTCGGGTACTACACACAAAAATACACGAATTGTTTTAATAAATTTTTTTTTTCAAAAAATGGATTAAAAACGGAAATGATAAAAATTCCGGGGTGGGAAATTCGAGTTGCCTGGTAGATTGTGATGATCGGTCTGAAAATTGGGAGAAAATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGAAATTTGAGATTTCAAAAAACCAAAATTCGAAAAAAAAATCTGAAATTCAGAATTCTCGGAATTTGAAGAAATTTGAAAAGTCTGGAAATTTTCAGAGTTTCAGAAAAAAAAACTGAAAATCGGAATATTAGAAAAAAATCCAATAAAATTCTGAAATTTTTGAAATTCAGAATTTCTAAAATTCCGCGAAATTCAAATTTTCGAAAATCTGAAAAGAAATTTTATTTATTTAAATTCAGTAAAAAATTGTAAAAATTTCGGAAAATTAAGAAATTCAGAAGTTCTAGAATTCAGAAATTTGGAAATTCAGAAATTCAGAAATTCAGTAAGTCAGAAATTCAGAAATTCAGAAGTTCTGAAATTCCGAAAGTCAGAAATTCAGAAATTCTAGAATTCAGAAATTCGGAAGTACTGAAATTTGGAAATTCAGAAATTCATAAGTTCTGGAATTCAGGAATTCAGGAATTCGGAAATTCAGAAATTGGGAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAAATCAGTAAATCGGGAAT</canonical>
            <polymorphic>TGGAGCGGGAACACTACAAGGTGTCGCTTTACGAGGCAGAATTGCGAAAAAATCAGAGAAAGAACGAGGAGGCATCTGGAGATTCAGAAGACGTTGTGGAGTCGAAGGATTCAGAAGAGGCGGCGACGAAAGATCCAGAAGACGTGAAAGAAGAGGAATCCGAGGAAAAATGATCTAAATTTGTCATTTTTATCACATTCACCCTTGTTTTTTTTTTGAATTGTTTCTCTATGCTGAAAATTGATTTTATTGTCATCTATATCCTCCTCAACTATTCGGGTACTACACACAAAAATACACGAATTGTTTTAATAAATTTTTTTTTTCAAAAAATGGATTAAAAACGGAAATGATAAAAATTCCGGGGTGGGAAATTCGAGTTGCCTGGTAGATTGTGATGATCGGTCTGAAAATTGGGAGAAAATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGAAATTTGAGATTTCAAAAAACCAAAATTCGAAAAAAAARTCTGAAATTCAGAATTCTCGGAATTTGAAGAAATTTGAAAAGTCTGGAAATTTTCAGAGTTTCAGAAAAAAAAACTGAAAATCGGAATATTAGAAAAAAATCCAATAAAATTCTGAAATTTTTGAAATTCAGAATTTCTAAAATTCCGCGAAATTCAAATTTTCGAAAATCTGAAAAGAAATTTTATTTATTTAAATTCAGTAAAAAATTGTAAAAATTTCGGAAAATTAAGAAATTCAGAAGTTCTAGAATTCAGAAATTTGGAAATTCAGAAATTCAGAAATTCAGTAAGTCAGAAATTCAGAAATTCAGAAGTTCTGAAATTCCGAAAGTCAGAAATTCAGAAATTCTAGAATTCAGAAATTCGGAAGTACTGAAATTTGGAAATTCAGAAATTCATAAGTTCTGGAATTCAGGAATTCAGGAATTCGGAAATTCAGAAATTGGGAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAAATCAGTAAATCGGGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTGCCTGGTAGATTGTGAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTAATATTCCGATTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>220</pcr_amplicon_size>
		<canonical_amplicon>AGTTGCCTGGTAGATTGTGATGATCGGTCTGAAAATTGGGAGAAAATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGAAATTTGAGATTTCAAAAAACCAAAATTCGAAAAAAAAATCTGAAATTCAGAATTCTCGGAATTTGAAGAAATTTGAAAAGTCTGGAAATTTTCAGAGTTTCAGAAAAAAAAACTGAAAATCGGAATATTAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AGTTGCCTGGTAGATTGTGATGATCGGTCTGAAAATTGGGAGAAAATTTCAATTTTTTGGCTGAAAAAGTTTGAAAAATTCGGAAATTTGAGATTTCAAAAAACCAAAATTCGAAAAAAAARTCTGAAATTCAGAATTCTCGGAATTTGAAGAAATTTGAAAAGTCTGGAAATTTTCAGAGTTTCAGAAAAAAAAACTGAAAATCGGAATATTAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27803</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>60360</contig_pos>
        <strand></strand>
        <context>acgtttatca[C/T]gatttgagta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTTCCTGTGAAAGATATCAAAAAATGATTCACTGATAAAACGTTTATCA</left_flank>
        <right_flank>GATTTGAGTAAATTTTAACAGTTGACTATTTTCTGATATCTTTTACAGGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCGCCAGCTGGACCACTGAAACGTACCTAAATGCGTTGACCATTGCTACTGAGTATTTTAATTGGAAAAAAGGAGCGCAGGGTAAAGGTAAATGAGTTTTTTGAGGTCAAAAATTGGTGATGAAATTTTTGTCTCTTCTCTGGAGCCAGTTGTTGTAGTCTTAGGGGTCAAGTGTTGTGGGTTGAAAGTAGAAAAAATGGCTTGAAAAAGAATTAAATAAGTCGAACTAACCTAACTTTTAATCTTGAGCCAATTTATCTCGGTTCCCGTAAAAGATATCAAAACTTTATCAATTGATAAAATATTTTTGATATTATGATTAACATTTTATCAGTTGATCGCTTTTTGATATCTTTCACAGAAATCGAGGTATAAGTGCTCGAAGTTGACAGCTAGAGGGCTATTTTATCTCCAAGTGAACTTTTAAGGTTTGAGCCAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAATGATTCACTGATAAAACGTTTATCACGATTTGAGTAAATTTTAACAGTTGACTATTTTCTGATATCTTTTACAGGAACCTAGATATATAGGCTCGAAGTTGACACACCCTTCTACCACAGGTTCTAAAGGATAGGCTAGCTTCCAGGGTTCATAACTCCGGACCCAGTTTATTGATTTTCTTCAAATTAATTTTTGAATTTGGCAGGTTTTGTAGATTGAATCATGTTTAATTTAATTTGTTTTATTTGAAAATAACAAAAAACGAGCCTGAAACCTGAAGCCACTTTTGGGAATGGCTCCCTAGGATCATAACAAAAACATCTTCAACTTTGAGCCAATTTATCTAGATTACTGTAAAAGATATTAAGAAGCGGTCAATTGATAAAATATTTATCATAAAATCACAAATATTTTATCAGTTGACACCGTTTCGATATCTTTTACAGGAAATGAGACATATGAGCTCAAAATTGATGGTCCATGTTGCGAAGGGCTATTGAAATTTTTTAATTTTGAAAATTCCGA</canonical>
            <polymorphic>TATCGCCAGCTGGACCACTGAAACGTACCTAAATGCGTTGACCATTGCTACTGAGTATTTTAATTGGAAAAAAGGAGCGCAGGGTAAAGGTAAATGAGTTTTTTGAGGTCAAAAATTGGTGATGAAATTTTTGTCTCTTCTCTGGAGCCAGTTGTTGTAGTCTTAGGGGTCAAGTGTTGTGGGTTGAAAGTAGAAAAAATGGCTTGAAAAAGAATTAAATAAGTCGAACTAACCTAACTTTTAATCTTGAGCCAATTTATCTCGGTTCCCGTAAAAGATATCAAAACTTTATCAATTGATAAAATATTTTTGATATTATGATTAACATTTTATCAGTTGATCGCTTTTTGATATCTTTCACAGAAATCGAGGTATAAGTGCTCGAAGTTGACAGCTAGAGGGCTATTTTATCTCCAAGTGAACTTTTAAGGTTTGAGCCAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAATGATTCACTGATAAAACGTTTATCAYGATTTGAGTAAATTTTAACAGTTGACTATTTTCTGATATCTTTTACAGGAACCTAGATATATAGGCTCGAAGTTGACACACCCTTCTACCACAGGTTCTAAAGGATAGGCTAGCTTCCAGGGTTCATAACTCCGGACCCAGTTTATTGATTTTCTTCAAATTAATTTTTGAATTTGGCAGGTTTTGTAGATTGAATCATGTTTAATTTAATTTGTTTTATTTGAAAATAACAAAAAACGAGCCTGAAACCTGAAGCCACTTTTGGGAATGGCTCCCTAGGATCATAACAAAAACATCTTCAACTTTGAGCCAATTTATCTAGATTACTGTAAAAGATATTAAGAAGCGGTCAATTGATAAAATATTTATCATAAAATCACAAATATTTTATCAGTTGACACCGTTTCGATATCTTTTACAGGAAATGAGACATATGAGCTCAAAATTGATGGTCCATGTTGCGAAGGGCTATTGAAATTTTTTAATTTTGAAAATTCCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>179 167 121 104 100 79 55 40 39 22 21 20 18 17 11 5 2</canonical_bands>
                <polymorphic_bands>179 167 121 104 100 97 55 40 39 22 21 20 17 11 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGGCTTGAAAAAGAATTAAATA</pcr_primer_p1>
		<pcr_primer_p2>AGTTATGAACCCTGGAAGCTA</pcr_primer_p2>
		<pcr_amplicon_size>433</pcr_amplicon_size>
		<canonical_amplicon>ATGGCTTGAAAAAGAATTAAATAAGTCGAACTAACCTAACTTTTAATCTTGAGCCAATTTATCTCGGTTCCCGTAAAAGATATCAAAACTTTATCAATTGATAAAATATTTTTGATATTATGATTAACATTTTATCAGTTGATCGCTTTTTGATATCTTTCACAGAAATCGAGGTATAAGTGCTCGAAGTTGACAGCTAGAGGGCTATTTTATCTCCAAGTGAACTTTTAAGGTTTGAGCCAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAATGATTCACTGATAAAACGTTTATCACGATTTGAGTAAATTTTAACAGTTGACTATTTTCTGATATCTTTTACAGGAACCTAGATATATAGGCTCGAAGTTGACACACCCTTCTACCACAGGTTCTAAAGGATAGGCTAGCTTCCAGGGTTCATAACT</canonical_amplicon>
		<polymorphic_amplicon>ATGGCTTGAAAAAGAATTAAATAAGTCGAACTAACCTAACTTTTAATCTTGAGCCAATTTATCTCGGTTCCCGTAAAAGATATCAAAACTTTATCAATTGATAAAATATTTTTGATATTATGATTAACATTTTATCAGTTGATCGCTTTTTGATATCTTTCACAGAAATCGAGGTATAAGTGCTCGAAGTTGACAGCTAGAGGGCTATTTTATCTCCAAGTGAACTTTTAAGGTTTGAGCCAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAATGATTCACTGATAAAACGTTTATCAYGATTTGAGTAAATTTTAACAGTTGACTATTTTCTGATATCTTTTACAGGAACCTAGATATATAGGCTCGAAGTTGACACACCCTTCTACCACAGGTTCTAAAGGATAGGCTAGCTTCCAGGGTTCATAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27804</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>140858</contig_pos>
        <strand>+</strand>
        <context>TTTTTCGGCC[C/T]AAAAATTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCGCAATCTTTCTAATTCTCGTTCCAGCTTTGCTCTTGTGTTTTTCGGCC</left_flank>
        <right_flank>AAAAATTTTGGTTTTTTGCAAATTTTTGGTGCAAAATTGAGTTTAAAGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAATTTCTATTGAATTAATTTTTCAAAAAAAACTTAAAAATTCAAATATTTGCAGGTCGCCCTCCGCATGTGCGCTCCACTGTACGAACGCCTTCGTAGATCAATTTCCTCCCGCTTGGCGTCAATTTCACACTCAAGTTCGAAGGATTTGAAGTCGTTAACGTTGAAAAATAATAATGGAGCGGCTAACAATAACAATAATAATAACAACGAAAACCCAGAAGAACAGCCATAGACATTTTTTTAAAAATCGGGTTGAATTATCTTTTTTTTAATTGAAACGGACCAATTTCGGTGCTTTTAATATTGAATAAATTTTTTTTTCTTTTTTTCTCTCATTTTCAGCGAAAATCGCTGGAATTTGGCGAAATTTCCGCTTTCAAAACTAAATTCAAACTTCCCTCTAGATTACGGTAGACAACAAAGTACCTTTACAACACACTCTACGCGCAATCTTTCTAATTCTCGTTCCAGCTTTGCTCTTGTGTTTTTCGGCCCAAAAATTTTGGTTTTTTGCAAATTTTTGGTGCAAAATTGAGTTTAAAGTCGATATTTGACTTAAATTCACTTTTTTCTTCCAATTTTCAGCAAAAATTTGCGGAAATTCGCTGAAATTTTTCTTTGGGTTACGGTAGACAGAAAAGTTCCCTCACAACAAACTTCACGCGCAATTACACACGTGGCTTTTTCTTGCTCATTTTTGTGTTTTAACCTAATTATTTTTGTGTTTTTGATCTAAAAATATCGGGTTTTCGCTAATGTTACATATAAAATTGAAGTTTTAAGGTTAAAAATCAGCAGAAATTCATTTTTGGCACCCAAAAGTACCCAGATTTGCCTGAAAATCACTCAAATGAAATTCTAGAAATTTCTGAAAAATGCGAAAAAGAAGCGATTTTTATTGTTTTTTTTTCGGTCAATTTTCGCCCCCGGAAAACCTAGAAAATCATCAAAAATTGACAGGAAATTTCAGAATTTCACCCATTTTTGCCCTGAAA</canonical>
            <polymorphic>ATAAATTTCTATTGAATTAATTTTTCAAAAAAAACTTAAAAATTCAAATATTTGCAGGTCGCCCTCCGCATGTGCGCTCCACTGTACGAACGCCTTCGTAGATCAATTTCCTCCCGCTTGGCGTCAATTTCACACTCAAGTTCGAAGGATTTGAAGTCGTTAACGTTGAAAAATAATAATGGAGCGGCTAACAATAACAATAATAATAACAACGAAAACCCAGAAGAACAGCCATAGACATTTTTTTAAAAATCGGGTTGAATTATCTTTTTTTTAATTGAAACGGACCAATTTCGGTGCTTTTAATATTGAATAAATTTTTTTTTCTTTTTTTCTCTCATTTTCAGCGAAAATCGCTGGAATTTGGCGAAATTTCCGCTTTCAAAACTAAATTCAAACTTCCCTCTAGATTACGGTAGACAACAAAGTACCTTTACAACACACTCTACGCGCAATCTTTCTAATTCTCGTTCCAGCTTTGCTCTTGTGTTTTTCGGCCYAAAAATTTTGGTTTTTTGCAAATTTTTGGTGCAAAATTGAGTTTAAAGTCGATATTTGACTTAAATTCACTTTTTTCTTCCAATTTTCAGCAAAAATTTGCGGAAATTCGCTGAAATTTTTCTTTGGGTTACGGTAGACAGAAAAGTTCCCTCACAACAAACTTCACGCGCAATTACACACGTGGCTTTTTCTTGCTCATTTTTGTGTTTTAACCTAATTATTTTTGTGTTTTTGATCTAAAAATATCGGGTTTTCGCTAATGTTACATATAAAATTGAAGTTTTAAGGTTAAAAATCAGCAGAAATTCATTTTTGGCACCCAAAAGTACCCAGATTTGCCTGAAAATCACTCAAATGAAATTCTAGAAATTTCTGAAAAATGCGAAAAAGAAGCGATTTTTATTGTTTTTTTTTCGGTCAATTTTCGCCCCCGGAAAACCTAGAAAATCATCAAAAATTGACAGGAAATTTCAGAATTTCACCCATTTTTGCCCTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>504 285 211</canonical_bands>
                <polymorphic_bands>715 285</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTAAATTCAAACTTCCCTCT</pcr_primer_p1>
		<pcr_primer_p2>GTAACCCAAAGAAAAATTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAACTAAATTCAAACTTCCCTCTAGATTACGGTAGACAACAAAGTACCTTTACAACACACTCTACGCGCAATCTTTCTAATTCTCGTTCCAGCTTTGCTCTTGTGTTTTTCGGCCCAAAAATTTTGGTTTTTTGCAAATTTTTGGTGCAAAATTGAGTTTAAAGTCGATATTTGACTTAAATTCACTTTTTTCTTCCAATTTTCAGCAAAAATTTGCGGAAATTCGCTGAAATTTTTCTTTGGGTTAC</canonical_amplicon>
		<polymorphic_amplicon>AAACTAAATTCAAACTTCCCTCTAGATTACGGTAGACAACAAAGTACCTTTACAACACACTCTACGCGCAATCTTTCTAATTCTCGTTCCAGCTTTGCTCTTGTGTTTTTCGGCCYAAAAATTTTGGTTTTTTGCAAATTTTTGGTGCAAAATTGAGTTTAAAGTCGATATTTGACTTAAATTCACTTTTTTCTTCCAATTTTCAGCAAAAATTTGCGGAAATTCGCTGAAATTTTTCTTTGGGTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27813</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>161185</contig_pos>
        <strand>+</strand>
        <context>ATTACAGGTA[A/G]TTTCGATTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATCTTTAATAGGAGCCGAGATAATTGACCTCAAAGTTCAATTACAGGTA</left_flank>
        <right_flank>TTTCGATTTTTAGTGCAAAGAGCAAAGTTTCACGCTTTCAAAACTAGTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGGCTTTTTCGGCCATTCTCAAGTTCCAGAATTTCCGATGTAAAGAAACAATTTTAAAAAAACGCTTCCATTCAGCTATAAACTTTGGGCTCAATTATCTCGGCTCCTATAATAGCTATCGCAAATCTGTCAACTGATAAAATATTGCTGATGATATGATAAACATTTTATCAGTTGACACATTTTTGATAACTTTTACAAGAACCGAGATATATGGACTCAAAGTTACCAGTTGACAAACTTTCAATATCTTTTGTAGGAGCCGAGTTATGAGCGATTCCAAAACTTCGCAACTTCCGACTACGTCATCGAATCGCATTTCGTACTTCCTTCCTACTCCTACGGCGCCTTATAGCTCGGTTCCTTTGGAAGATATCAAAATTTTGTTACCTGATAAAATGTTTATCATAATAACAGTAATATTTTATCAGCTGACAGGTTTTTGATATCTTTAATAGGAGCCGAGATAATTGACCTCAAAGTTCAATTACAGGTAGTTTCGATTTTTAGTGCAAAGAGCAAAGTTTCACGCTTTCAAAACTAGTGTCAACTTTGTCGGAGCATTCTGAAATTTTCAGAGAATATACAACAAGAAAATGGCTTCATTTTAATAGTTGACAACTTTTTAGTACGAATTCATTAAAATGAGATATACCGTTCGAAACCCGCCAAGTACAAAAATCTGGCCTATCTCTCCAGTCAGGAATTATTGGAATCAGCTGTCAACTATAAAAATGAAGCTCTATTTTTGTTTTATAGTTTCTGAGCGCTTTCAGAACCATAGGATTACTGTAACCAACTTTTTCAGAGCTCCAAACTTCCGACCTTTTGGCTACGTCATCAAATCGTATTCCCTGAACCTGATGAACACGGCGCAAACACCATATTTTCCGGAAAAAGTGTGTGTTTCTTAAGAGCTCCTCACATTTTGCTCGTTTTCTAAGAACAGAGTATAATAATGGGGCAAGGGTGCAACCCCCACAGTGTCAACGCCGCA</canonical>
            <polymorphic>TTTTGGCTTTTTCGGCCATTCTCAAGTTCCAGAATTTCCGATGTAAAGAAACAATTTTAAAAAAACGCTTCCATTCAGCTATAAACTTTGGGCTCAATTATCTCGGCTCCTATAATAGCTATCGCAAATCTGTCAACTGATAAAATATTGCTGATGATATGATAAACATTTTATCAGTTGACACATTTTTGATAACTTTTACAAGAACCGAGATATATGGACTCAAAGTTACCAGTTGACAAACTTTCAATATCTTTTGTAGGAGCCGAGTTATGAGCGATTCCAAAACTTCGCAACTTCCGACTACGTCATCGAATCGCATTTCGTACTTCCTTCCTACTCCTACGGCGCCTTATAGCTCGGTTCCTTTGGAAGATATCAAAATTTTGTTACCTGATAAAATGTTTATCATAATAACAGTAATATTTTATCAGCTGACAGGTTTTTGATATCTTTAATAGGAGCCGAGATAATTGACCTCAAAGTTCAATTACAGGTARTTTCGATTTTTAGTGCAAAGAGCAAAGTTTCACGCTTTCAAAACTAGTGTCAACTTTGTCGGAGCATTCTGAAATTTTCAGAGAATATACAACAAGAAAATGGCTTCATTTTAATAGTTGACAACTTTTTAGTACGAATTCATTAAAATGAGATATACCGTTCGAAACCCGCCAAGTACAAAAATCTGGCCTATCTCTCCAGTCAGGAATTATTGGAATCAGCTGTCAACTATAAAAATGAAGCTCTATTTTTGTTTTATAGTTTCTGAGCGCTTTCAGAACCATAGGATTACTGTAACCAACTTTTTCAGAGCTCCAAACTTCCGACCTTTTGGCTACGTCATCAAATCGTATTCCCTGAACCTGATGAACACGGCGCAAACACCATATTTTCCGGAAAAAGTGTGTGTTTCTTAAGAGCTCCTCACATTTTGCTCGTTTTCTAAGAACAGAGTATAATAATGGGGCAAGGGTGCAACCCCCACAGTGTCAACGCCGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGTACTTCCTTCCTACTCCTAC</pcr_primer_p1>
		<pcr_primer_p2>AGTTGGTTACAGTAATCCTATGGT</pcr_primer_p2>
		<pcr_amplicon_size>481</pcr_amplicon_size>
		<canonical_amplicon>TCGTACTTCCTTCCTACTCCTACGGCGCCTTATAGCTCGGTTCCTTTGGAAGATATCAAAATTTTGTTACCTGATAAAATGTTTATCATAATAACAGTAATATTTTATCAGCTGACAGGTTTTTGATATCTTTAATAGGAGCCGAGATAATTGACCTCAAAGTTCAATTACAGGTAGTTTCGATTTTTAGTGCAAAGAGCAAAGTTTCACGCTTTCAAAACTAGTGTCAACTTTGTCGGAGCATTCTGAAATTTTCAGAGAATATACAACAAGAAAATGGCTTCATTTTAATAGTTGACAACTTTTTAGTACGAATTCATTAAAATGAGATATACCGTTCGAAACCCGCCAAGTACAAAAATCTGGCCTATCTCTCCAGTCAGGAATTATTGGAATCAGCTGTCAACTATAAAAATGAAGCTCTATTTTTGTTTTATAGTTTCTGAGCGCTTTCAGAACCATAGGATTACTGTAACCAACT</canonical_amplicon>
		<polymorphic_amplicon>TCGTACTTCCTTCCTACTCCTACGGCGCCTTATAGCTCGGTTCCTTTGGAAGATATCAAAATTTTGTTACCTGATAAAATGTTTATCATAATAACAGTAATATTTTATCAGCTGACAGGTTTTTGATATCTTTAATAGGAGCCGAGATAATTGACCTCAAAGTTCAATTACAGGTARTTTCGATTTTTAGTGCAAAGAGCAAAGTTTCACGCTTTCAAAACTAGTGTCAACTTTGTCGGAGCATTCTGAAATTTTCAGAGAATATACAACAAGAAAATGGCTTCATTTTAATAGTTGACAACTTTTTAGTACGAATTCATTAAAATGAGATATACCGTTCGAAACCCGCCAAGTACAAAAATCTGGCCTATCTCTCCAGTCAGGAATTATTGGAATCAGCTGTCAACTATAAAAATGAAGCTCTATTTTTGTTTTATAGTTTCTGAGCGCTTTCAGAACCATAGGATTACTGTAACCAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27814</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>161447</contig_pos>
        <strand></strand>
        <context>ttgttttata[G/A]tttctgagcg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTGGAATCAGCTGTCAACTATAAAAATGAAGCTCTATTTTTGTTTTATA</left_flank>
        <right_flank>TTTCTGAGCGCTTTCAGAACCATAGGATTACTGTAACCAACTTTTTCAGA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCCGAGTTATGAGCGATTCCAAAACTTCGCAACTTCCGACTACGTCATCGAATCGCATTTCGTACTTCCTTCCTACTCCTACGGCGCCTTATAGCTCGGTTCCTTTGGAAGATATCAAAATTTTGTTACCTGATAAAATGTTTATCATAATAACAGTAATATTTTATCAGCTGACAGGTTTTTGATATCTTTAATAGGAGCCGAGATAATTGACCTCAAAGTTCAATTACAGGTAGTTTCGATTTTTAGTGCAAAGAGCAAAGTTTCACGCTTTCAAAACTAGTGTCAACTTTGTCGGAGCATTCTGAAATTTTCAGAGAATATACAACAAGAAAATGGCTTCATTTTAATAGTTGACAACTTTTTAGTACGAATTCATTAAAATGAGATATACCGTTCGAAACCCGCCAAGTACAAAAATCTGGCCTATCTCTCCAGTCAGGAATTATTGGAATCAGCTGTCAACTATAAAAATGAAGCTCTATTTTTGTTTTATAGTTTCTGAGCGCTTTCAGAACCATAGGATTACTGTAACCAACTTTTTCAGAGCTCCAAACTTCCGACCTTTTGGCTACGTCATCAAATCGTATTCCCTGAACCTGATGAACACGGCGCAAACACCATATTTTCCGGAAAAAGTGTGTGTTTCTTAAGAGCTCCTCACATTTTGCTCGTTTTCTAAGAACAGAGTATAATAATGGGGCAAGGGTGCAACCCCCACAGTGTCAACGCCGCAAAGAGATTTTTTTGTCATTGATCCGGTTGGCTGGGAGAGAAAGGCAAATGGGAATAGAGGAACATGTCATTACAAAGTACACCAACTAGAAACATCGCGCATCAAACATCATACATGTTTCGGTGACCCCAGGATTTGGTTTGTTGAACTCTGGCGGAAGGCAAAAAATTATACAGTATGCCATACATGTAATCCGGGCCTTTGCCGGGCCTTCGCGGGCCCTGCCATAAATTCTTTCAGAATCAATATTTTCTAACCAACT</canonical>
            <polymorphic>GAGCCGAGTTATGAGCGATTCCAAAACTTCGCAACTTCCGACTACGTCATCGAATCGCATTTCGTACTTCCTTCCTACTCCTACGGCGCCTTATAGCTCGGTTCCTTTGGAAGATATCAAAATTTTGTTACCTGATAAAATGTTTATCATAATAACAGTAATATTTTATCAGCTGACAGGTTTTTGATATCTTTAATAGGAGCCGAGATAATTGACCTCAAAGTTCAATTACAGGTAGTTTCGATTTTTAGTGCAAAGAGCAAAGTTTCACGCTTTCAAAACTAGTGTCAACTTTGTCGGAGCATTCTGAAATTTTCAGAGAATATACAACAAGAAAATGGCTTCATTTTAATAGTTGACAACTTTTTAGTACGAATTCATTAAAATGAGATATACCGTTCGAAACCCGCCAAGTACAAAAATCTGGCCTATCTCTCCAGTCAGGAATTATTGGAATCAGCTGTCAACTATAAAAATGAAGCTCTATTTTTGTTTTATARTTTCTGAGCGCTTTCAGAACCATAGGATTACTGTAACCAACTTTTTCAGAGCTCCAAACTTCCGACCTTTTGGCTACGTCATCAAATCGTATTCCCTGAACCTGATGAACACGGCGCAAACACCATATTTTCCGGAAAAAGTGTGTGTTTCTTAAGAGCTCCTCACATTTTGCTCGTTTTCTAAGAACAGAGTATAATAATGGGGCAAGGGTGCAACCCCCACAGTGTCAACGCCGCAAAGAGATTTTTTTGTCATTGATCCGGTTGGCTGGGAGAGAAAGGCAAATGGGAATAGAGGAACATGTCATTACAAAGTACACCAACTAGAAACATCGCGCATCAAACATCATACATGTTTCGGTGACCCCAGGATTTGGTTTGTTGAACTCTGGCGGAAGGCAAAAAATTATACAGTATGCCATACATGTAATCCGGGCCTTTGCCGGGCCTTCGCGGGCCCTGCCATAAATTCTTTCAGAATCAATATTTTCTAACCAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGCTTTCAAAACTAGTGTCA</pcr_primer_p1>
		<pcr_primer_p2>AGCTCTGAAAAAGTTGGTTACA</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>ACGCTTTCAAAACTAGTGTCAACTTTGTCGGAGCATTCTGAAATTTTCAGAGAATATACAACAAGAAAATGGCTTCATTTTAATAGTTGACAACTTTTTAGTACGAATTCATTAAAATGAGATATACCGTTCGAAACCCGCCAAGTACAAAAATCTGGCCTATCTCTCCAGTCAGGAATTATTGGAATCAGCTGTCAACTATAAAAATGAAGCTCTATTTTTGTTTTATAGTTTCTGAGCGCTTTCAGAACCATAGGATTACTGTAACCAACTTTTTCAGAGCT</canonical_amplicon>
		<polymorphic_amplicon>ACGCTTTCAAAACTAGTGTCAACTTTGTCGGAGCATTCTGAAATTTTCAGAGAATATACAACAAGAAAATGGCTTCATTTTAATAGTTGACAACTTTTTAGTACGAATTCATTAAAATGAGATATACCGTTCGAAACCCGCCAAGTACAAAAATCTGGCCTATCTCTCCAGTCAGGAATTATTGGAATCAGCTGTCAACTATAAAAATGAAGCTCTATTTTTGTTTTATARTTTCTGAGCGCTTTCAGAACCATAGGATTACTGTAACCAACTTTTTCAGAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27815</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>179735</contig_pos>
        <strand>+</strand>
        <context>TATTTTGAAC[G/T]TTTTCAGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTAGAATTTTCTAGAACCGAAAAACGCAACAATAATAAGTATTTTGAAC</left_flank>
        <right_flank>TTTTCAGAATTTCGAATTTCACATTTTTTGAACTTTTCAGTGCTTTGAGG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGATTTTTCGGAGTTTTAGGATTTTGTAGAATTTTTTGTTTAGTTTGAAGAGATCATAGGATCTTCTAGGATCTTAAAAATCTGAAAATCAGCATGCCTTGATTTTTTAGTTTCTAAATTGTCCCTATGATTTTTAGATATCACTTTCATCGATCTCTGAATTTTAGGATTTTCAGAATTTTTAGAATATTTTAGAATCTTGAAAATCTGAAAATCTGAGAATTCCCTTAACTTTAGAATTCAAGAATGATTAAGATTTTCAAGAATCCTGAAAACCTGGAAATCTGAATTTTTAGAATTTTAAAGATTTTTCAAGATCTTGAGTGCCTGAAAATCTGTAAAACATAAAAATTTTTGGATTTTCAGATTTTCAAAGTTTCAGACCATTTTTAGGATTCCATTTTTGCAGAATTTTCGGGATTTCAGAATTTTCAAAGCTCCTAGAATTTCTAGAATTTTCTAGAACCGAAAAACGCAACAATAATAAGTATTTTGAACGTTTTCAGAATTTCGAATTTCACATTTTTTGAACTTTTCAGTGCTTTGAGGCAGTTTTAAAAACGTTTAAAAGTCTTACGATTTGTAGAAAATTTTGAGTTTCGAGAATCTGAAATTTCTAAGAATTTCAGAATTCTAGGATTTCAGAATTTTGGGAATTCCAGAATTTCAGAATCTCAGAATTTCCGAATTTCTCTAATTTTCAAATTTTGAGATCACAACTACCCGAGGTGGTCAAAAATGACGACCGGCCGGTGGTCGAGGGCCGGCCATGAGGGTTCTCGCAGATGTTTCCGTTTGAAACTTGAATCATCTACCCAATGTTTTCTAGTTTTCTTTTCCTCTCATTAAAAATTTCCACCTGTCTGACCGCACATTTTTTTGCTTTCCCTACTACTACAGAAATCACAAAAAATGTCTCATTAGCAGAAAAATGCATTTTTAGCATGAGTAATCTAGAAAACGTCAGGTGTGTGTTTTCCGTTTCCAGTTTTTTTTTGT</canonical>
            <polymorphic>TGGATTTTTCGGAGTTTTAGGATTTTGTAGAATTTTTTGTTTAGTTTGAAGAGATCATAGGATCTTCTAGGATCTTAAAAATCTGAAAATCAGCATGCCTTGATTTTTTAGTTTCTAAATTGTCCCTATGATTTTTAGATATCACTTTCATCGATCTCTGAATTTTAGGATTTTCAGAATTTTTAGAATATTTTAGAATCTTGAAAATCTGAAAATCTGAGAATTCCCTTAACTTTAGAATTCAAGAATGATTAAGATTTTCAAGAATCCTGAAAACCTGGAAATCTGAATTTTTAGAATTTTAAAGATTTTTCAAGATCTTGAGTGCCTGAAAATCTGTAAAACATAAAAATTTTTGGATTTTCAGATTTTCAAAGTTTCAGACCATTTTTAGGATTCCATTTTTGCAGAATTTTCGGGATTTCAGAATTTTCAAAGCTCCTAGAATTTCTAGAATTTTCTAGAACCGAAAAACGCAACAATAATAAGTATTTTGAACKTTTTCAGAATTTCGAATTTCACATTTTTTGAACTTTTCAGTGCTTTGAGGCAGTTTTAAAAACGTTTAAAAGTCTTACGATTTGTAGAAAATTTTGAGTTTCGAGAATCTGAAATTTCTAAGAATTTCAGAATTCTAGGATTTCAGAATTTTGGGAATTCCAGAATTTCAGAATCTCAGAATTTCCGAATTTCTCTAATTTTCAAATTTTGAGATCACAACTACCCGAGGTGGTCAAAAATGACGACCGGCCGGTGGTCGAGGGCCGGCCATGAGGGTTCTCGCAGATGTTTCCGTTTGAAACTTGAATCATCTACCCAATGTTTTCTAGTTTTCTTTTCCTCTCATTAAAAATTTCCACCTGTCTGACCGCACATTTTTTTGCTTTCCCTACTACTACAGAAATCACAAAAAATGTCTCATTAGCAGAAAAATGCATTTTTAGCATGAGTAATCTAGAAAACGTCAGGTGTGTGTTTTCCGTTTCCAGTTTTTTTTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>498 438 64</canonical_bands>
                <polymorphic_bands>562 438</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>498 400 64 38</canonical_bands>
                <polymorphic_bands>562 400 38</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAGATTTTCAAAGTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>TCTCGAAACTCAAAATTTTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAGATTTTCAAAGTTTCAGACCATTTTTAGGATTCCATTTTTGCAGAATTTTCGGGATTTCAGAATTTTCAAAGCTCCTAGAATTTCTAGAATTTTCTAGAACCGAAAAACGCAACAATAATAAGTATTTTGAACGTTTTCAGAATTTCGAATTTCACATTTTTTGAACTTTTCAGTGCTTTGAGGCAGTTTTAAAAACGTTTAAAAGTCTTACGATTTGTAGAAAATTTTGAGTTTCGAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAGATTTTCAAAGTTTCAGACCATTTTTAGGATTCCATTTTTGCAGAATTTTCGGGATTTCAGAATTTTCAAAGCTCCTAGAATTTCTAGAATTTTCTAGAACCGAAAAACGCAACAATAATAAGTATTTTGAACKTTTTCAGAATTTCGAATTTCACATTTTTTGAACTTTTCAGTGCTTTGAGGCAGTTTTAAAAACGTTTAAAAGTCTTACGATTTGTAGAAAATTTTGAGTTTCGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27816</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>181598</contig_pos>
        <strand></strand>
        <context>attttcagaa[G/T]ttcagatttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGAATCAGATTTTCAGCATTTTGAAAATTCAGAAAGTCTGATTTTCAGAA</left_flank>
        <right_flank>TTCAGATTTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGCCGAGATAATTGAGCTCAAAGTTAGGTATAGGTTTCAAGCTAGTTCTTTTAGTATTTTCAAAACGGCCCATTTTCTAGCTCTAAAAATCCTGGATTTTAAAAATTACAAATCTTATTAAGTTGTTCATTTTTTAATTGTTCAAATGTTGCATTTTTGAAATATTCAAAAAAACATTTTTTCAAAATTTTCAAAACATTCAAATCTCCAGAGAATCCGTGGCGACGTCGATTCGGTCTTCTTCTCGCCATTCAGAATCATTGGAAAACGTGCTCAGGTTTTGAGCCCGGCTTATGAGTAAGTTCCTGAAAACAGTCTAATAAAAATTAGTGAAAACTTTGAAATTTGAGAAACCTAAAAAAAATTTCGAGTTTCAGATTTTTAGATTTTCAGAGATTCGGATTTTCAAACTTTCGAAATTCCAGAATTCGAGATTTTCCGATTTTCCGAATCAGATTTTCAGCATTTTGAAAATTCAGAAAGTCTGATTTTCAGAAGTTCAGATTTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAAACTCAGAATTTCAGAGTCTCAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAACCTCAGACTTTCAGATTTTCAGATTTTCAGAATTTCGGATTTTCAGGAGTTTAAGAATCTCAGAATTTCCAAATTCAAGAAGCTCACAATCACAGAATTTCAGAATCTTAGGCAAAATATCTAGAAATATTTATTCCGCCTTCTTTTAAAAAAAATTCAATTTGAAATAAAAAAAACATAATTACAAAATTTATAAGTTTCCAGGAAATTCGTTTATTCCAAAATTTTGAAATTTTAAGATCCAGAATTTTTTTCTGAAAAACAATTTAAAAAAATTTTCAGCGACCTCGGCGAGTACCTTGTCAACCCGGACTTTGTCTAAAGTCTCAACCAATTTCGAATTTTCCGGAAATTTCCATCTCAGTCAATTTAA</canonical>
            <polymorphic>GGAGCCGAGATAATTGAGCTCAAAGTTAGGTATAGGTTTCAAGCTAGTTCTTTTAGTATTTTCAAAACGGCCCATTTTCTAGCTCTAAAAATCCTGGATTTTAAAAATTACAAATCTTATTAAGTTGTTCATTTTTTAATTGTTCAAATGTTGCATTTTTGAAATATTCAAAAAAACATTTTTTCAAAATTTTCAAAACATTCAAATCTCCAGAGAATCCGTGGCGACGTCGATTCGGTCTTCTTCTCGCCATTCAGAATCATTGGAAAACGTGCTCAGGTTTTGAGCCCGGCTTATGAGTAAGTTCCTGAAAACAGTCTAATAAAAATTAGTGAAAACTTTGAAATTTGAGAAACCTAAAAAAAATTTCGAGTTTCAGATTTTTAGATTTTCAGAGATTCGGATTTTCAAACTTTCGAAATTCCAGAATTCGAGATTTTCCGATTTTCCGAATCAGATTTTCAGCATTTTGAAAATTCAGAAAGTCTGATTTTCAGAAKTTCAGATTTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAAACTCAGAATTTCAGAGTCTCAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAACCTCAGACTTTCAGATTTTCAGATTTTCAGAATTTCGGATTTTCAGGAGTTTAAGAATCTCAGAATTTCCAAATTCAAGAAGCTCACAATCACAGAATTTCAGAATCTTAGGCAAAATATCTAGAAATATTTATTCCGCCTTCTTTTAAAAAAAATTCAATTTGAAATAAAAAAAACATAATTACAAAATTTATAAGTTTCCAGGAAATTCGTTTATTCCAAAATTTTGAAATTTTAAGATCCAGAATTTTTTTCTGAAAAACAATTTAAAAAAATTTTCAGCGACCTCGGCGAGTACCTTGTCAACCCGGACTTTGTCTAAAGTCTCAACCAATTTCGAATTTTCCGGAAATTTCCATCTCAGTCAATTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTGAAATTTGAGAAACCTAAA</pcr_primer_p1>
		<pcr_primer_p2>TGTGATTGTGAGCTTCTTGA</pcr_primer_p2>
		<pcr_amplicon_size>383</pcr_amplicon_size>
		<canonical_amplicon>CTTTGAAATTTGAGAAACCTAAAAAAAATTTCGAGTTTCAGATTTTTAGATTTTCAGAGATTCGGATTTTCAAACTTTCGAAATTCCAGAATTCGAGATTTTCCGATTTTCCGAATCAGATTTTCAGCATTTTGAAAATTCAGAAAGTCTGATTTTCAGAAGTTCAGATTTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAAACTCAGAATTTCAGAGTCTCAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAACCTCAGACTTTCAGATTTTCAGATTTTCAGAATTTCGGATTTTCAGGAGTTTAAGAATCTCAGAATTTCCAAATTCAAGAAGCTCACAATCACA</canonical_amplicon>
		<polymorphic_amplicon>CTTTGAAATTTGAGAAACCTAAAAAAAATTTCGAGTTTCAGATTTTTAGATTTTCAGAGATTCGGATTTTCAAACTTTCGAAATTCCAGAATTCGAGATTTTCCGATTTTCCGAATCAGATTTTCAGCATTTTGAAAATTCAGAAAGTCTGATTTTCAGAAKTTCAGATTTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAAACTCAGAATTTCAGAGTCTCAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAACCTCAGACTTTCAGATTTTCAGATTTTCAGAATTTCGGATTTTCAGGAGTTTAAGAATCTCAGAATTTCCAAATTCAAGAAGCTCACAATCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27817</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>181625</contig_pos>
        <strand></strand>
        <context>ctcagaatct[C/G]agaatctcag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCAGAAAGTCTGATTTTCAGAAGTTCAGATTTTCAGAATCTCAGAATCT</left_flank>
        <right_flank>AGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAAACTCAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGTATAGGTTTCAAGCTAGTTCTTTTAGTATTTTCAAAACGGCCCATTTTCTAGCTCTAAAAATCCTGGATTTTAAAAATTACAAATCTTATTAAGTTGTTCATTTTTTAATTGTTCAAATGTTGCATTTTTGAAATATTCAAAAAAACATTTTTTCAAAATTTTCAAAACATTCAAATCTCCAGAGAATCCGTGGCGACGTCGATTCGGTCTTCTTCTCGCCATTCAGAATCATTGGAAAACGTGCTCAGGTTTTGAGCCCGGCTTATGAGTAAGTTCCTGAAAACAGTCTAATAAAAATTAGTGAAAACTTTGAAATTTGAGAAACCTAAAAAAAATTTCGAGTTTCAGATTTTTAGATTTTCAGAGATTCGGATTTTCAAACTTTCGAAATTCCAGAATTCGAGATTTTCCGATTTTCCGAATCAGATTTTCAGCATTTTGAAAATTCAGAAAGTCTGATTTTCAGAAGTTCAGATTTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAAACTCAGAATTTCAGAGTCTCAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAACCTCAGACTTTCAGATTTTCAGATTTTCAGAATTTCGGATTTTCAGGAGTTTAAGAATCTCAGAATTTCCAAATTCAAGAAGCTCACAATCACAGAATTTCAGAATCTTAGGCAAAATATCTAGAAATATTTATTCCGCCTTCTTTTAAAAAAAATTCAATTTGAAATAAAAAAAACATAATTACAAAATTTATAAGTTTCCAGGAAATTCGTTTATTCCAAAATTTTGAAATTTTAAGATCCAGAATTTTTTTCTGAAAAACAATTTAAAAAAATTTTCAGCGACCTCGGCGAGTACCTTGTCAACCCGGACTTTGTCTAAAGTCTCAACCAATTTCGAATTTTCCGGAAATTTCCATCTCAGTCAATTTAATTTATTCATCCGCTTTTCAGATCTAAC</canonical>
            <polymorphic>AGGTATAGGTTTCAAGCTAGTTCTTTTAGTATTTTCAAAACGGCCCATTTTCTAGCTCTAAAAATCCTGGATTTTAAAAATTACAAATCTTATTAAGTTGTTCATTTTTTAATTGTTCAAATGTTGCATTTTTGAAATATTCAAAAAAACATTTTTTCAAAATTTTCAAAACATTCAAATCTCCAGAGAATCCGTGGCGACGTCGATTCGGTCTTCTTCTCGCCATTCAGAATCATTGGAAAACGTGCTCAGGTTTTGAGCCCGGCTTATGAGTAAGTTCCTGAAAACAGTCTAATAAAAATTAGTGAAAACTTTGAAATTTGAGAAACCTAAAAAAAATTTCGAGTTTCAGATTTTTAGATTTTCAGAGATTCGGATTTTCAAACTTTCGAAATTCCAGAATTCGAGATTTTCCGATTTTCCGAATCAGATTTTCAGCATTTTGAAAATTCAGAAAGTCTGATTTTCAGAAGTTCAGATTTTCAGAATCTCAGAATCTSAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAAACTCAGAATTTCAGAGTCTCAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAACCTCAGACTTTCAGATTTTCAGATTTTCAGAATTTCGGATTTTCAGGAGTTTAAGAATCTCAGAATTTCCAAATTCAAGAAGCTCACAATCACAGAATTTCAGAATCTTAGGCAAAATATCTAGAAATATTTATTCCGCCTTCTTTTAAAAAAAATTCAATTTGAAATAAAAAAAACATAATTACAAAATTTATAAGTTTCCAGGAAATTCGTTTATTCCAAAATTTTGAAATTTTAAGATCCAGAATTTTTTTCTGAAAAACAATTTAAAAAAATTTTCAGCGACCTCGGCGAGTACCTTGTCAACCCGGACTTTGTCTAAAGTCTCAACCAATTTCGAATTTTCCGGAAATTTCCATCTCAGTCAATTTAATTTATTCATCCGCTTTTCAGATCTAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>229 154 136 122 40 40 25 24 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6</canonical_bands>
                <polymorphic_bands>229 154 136 122 40 40 25 24 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTGAAATTTGAGAAACCTAAA</pcr_primer_p1>
		<pcr_primer_p2>TGTGATTGTGAGCTTCTTGA</pcr_primer_p2>
		<pcr_amplicon_size>383</pcr_amplicon_size>
		<canonical_amplicon>CTTTGAAATTTGAGAAACCTAAAAAAAATTTCGAGTTTCAGATTTTTAGATTTTCAGAGATTCGGATTTTCAAACTTTCGAAATTCCAGAATTCGAGATTTTCCGATTTTCCGAATCAGATTTTCAGCATTTTGAAAATTCAGAAAGTCTGATTTTCAGAAGTTCAGATTTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAAACTCAGAATTTCAGAGTCTCAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAACCTCAGACTTTCAGATTTTCAGATTTTCAGAATTTCGGATTTTCAGGAGTTTAAGAATCTCAGAATTTCCAAATTCAAGAAGCTCACAATCACA</canonical_amplicon>
		<polymorphic_amplicon>CTTTGAAATTTGAGAAACCTAAAAAAAATTTCGAGTTTCAGATTTTTAGATTTTCAGAGATTCGGATTTTCAAACTTTCGAAATTCCAGAATTCGAGATTTTCCGATTTTCCGAATCAGATTTTCAGCATTTTGAAAATTCAGAAAGTCTGATTTTCAGAAGTTCAGATTTTCAGAATCTCAGAATCTSAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAAACTCAGAATTTCAGAGTCTCAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAACCTCAGACTTTCAGATTTTCAGATTTTCAGAATTTCGGATTTTCAGGAGTTTAAGAATCTCAGAATTTCCAAATTCAAGAAGCTCACAATCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27818</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>211141</contig_pos>
        <strand></strand>
        <context>tcggctccta[A/C]ttgagctaga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTCTTCGTCTCTAGCCCCCTGAATTTCAAAATTTTGTATCTCGGCTCCTA</left_flank>
        <right_flank>TTGAGCTAGAAGATTGGTTTTTGAACCGAAATTTGGGGTTTTTCTCCAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAAAATTTGAAAAGGATGAGAGGATTACTGTAAAAAAACTGATTAATTTTTTAGAAGATTATGAAGCTAAAAAATTTCTTCAATTTTGTCTAAAAACCAATTTTCTAGCACTTCTGGAAGCCGAGATACGCCTCTTCAAAGATTGGTGGGCAAGAGACGCAGACAACGAGATACGCTGCGTCTCTAACCACACAAATTTTAAACTGTTGTATCTCGGCTCCTAGATGGACTAGAAAACTGATTTTTAGACAGCTTGACAGGAAATTTTTAGCTCTACAAGTTCCTAAAAAATTTCTTTTTTTTTGAAATCTCTGGTGTTTTTGAAATTCTAGAAAATACAAATAAAATTGCTTATTTAAGTACAGAAGCCAACTTCCTAGCGCTGCCAAAAGCGGAGATACGCCCGTTTGAACTTTAGGAGAGACGTAGACGGTTAGAGTGTCTCGTTGTCTTCGTCTCTAGCCCCCTGAATTTCAAAATTTTGTATCTCGGCTCCTAATTGAGCTAGAAGATTGGTTTTTGAACCGAAATTTGGGGTTTTTCTCCAATTTTTCGATTGGTCCCTATTTGTTAACTTTACCCCTATAATAAATACCGTTTATTGTCCCATACACAAGTAAATATTTTCCCAGACGAATCAGCGCTCCAATCCTCTTCACCTTCTGGTATACCCCAACCGGATGGAGGTCCTTCTTTATCGGTGTCGATTTCACACTTTAGTGTAGCTGAGGTACCGTAATACAGATGTTGAAAAGATTGCGTGGGAATGGGAAAGAACAATAAACCGGATGGATTAAAGGTGGCAGTCTGTTTGTCTAGATGTCCGCAAATGCAAAACTGTCTGAAAAAGGAGCAATATGGATGTTTGAAAATCGTCAAAAAAGTCAGGATTGCGAAATTTGCGACCCCTCGATGTTCCCGAAATTCTACAGTAAAACCAGTACTAATTTGTTCCAATTCCCCTAATCATGTCCCAATGATCTTTATGACAATCGTGGC</canonical>
            <polymorphic>CGAAAATTTGAAAAGGATGAGAGGATTACTGTAAAAAAACTGATTAATTTTTTAGAAGATTATGAAGCTAAAAAATTTCTTCAATTTTGTCTAAAAACCAATTTTCTAGCACTTCTGGAAGCCGAGATACGCCTCTTCAAAGATTGGTGGGCAAGAGACGCAGACAACGAGATACGCTGCGTCTCTAACCACACAAATTTTAAACTGTTGTATCTCGGCTCCTAGATGGACTAGAAAACTGATTTTTAGACAGCTTGACAGGAAATTTTTAGCTCTACAAGTTCCTAAAAAATTTCTTTTTTTTTGAAATCTCTGGTGTTTTTGAAATTCTAGAAAATACAAATAAAATTGCTTATTTAAGTACAGAAGCCAACTTCCTAGCGCTGCCAAAAGCGGAGATACGCCCGTTTGAACTTTAGGAGAGACGTAGACGGTTAGAGTGTCTCGTTGTCTTCGTCTCTAGCCCCCTGAATTTCAAAATTTTGTATCTCGGCTCCTAMTTGAGCTAGAAGATTGGTTTTTGAACCGAAATTTGGGGTTTTTCTCCAATTTTTCGATTGGTCCCTATTTGTTAACTTTACCCCTATAATAAATACCGTTTATTGTCCCATACACAAGTAAATATTTTCCCAGACGAATCAGCGCTCCAATCCTCTTCACCTTCTGGTATACCCCAACCGGATGGAGGTCCTTCTTTATCGGTGTCGATTTCACACTTTAGTGTAGCTGAGGTACCGTAATACAGATGTTGAAAAGATTGCGTGGGAATGGGAAAGAACAATAAACCGGATGGATTAAAGGTGGCAGTCTGTTTGTCTAGATGTCCGCAAATGCAAAACTGTCTGAAAAAGGAGCAATATGGATGTTTGAAAATCGTCAAAAAAGTCAGGATTGCGAAATTTGCGACCCCTCGATGTTCCCGAAATTCTACAGTAAAACCAGTACTAATTTGTTCCAATTCCCCTAATCATGTCCCAATGATCTTTATGACAATCGTGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>350 124 96 68 44 41 35 31 28 27 26 23 21 20 18 17 10 9 8 4</canonical_bands>
                <polymorphic_bands>350 124 96 68 51 44 41 35 28 27 26 23 21 18 17 10 9 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATCTCTGGTGTTTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>AATCGAAAAATTGGAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GAAATCTCTGGTGTTTTTGAAATTCTAGAAAATACAAATAAAATTGCTTATTTAAGTACAGAAGCCAACTTCCTAGCGCTGCCAAAAGCGGAGATACGCCCGTTTGAACTTTAGGAGAGACGTAGACGGTTAGAGTGTCTCGTTGTCTTCGTCTCTAGCCCCCTGAATTTCAAAATTTTGTATCTCGGCTCCTAATTGAGCTAGAAGATTGGTTTTTGAACCGAAATTTGGGGTTTTTCTCCAATTTTTCGATT</canonical_amplicon>
		<polymorphic_amplicon>GAAATCTCTGGTGTTTTTGAAATTCTAGAAAATACAAATAAAATTGCTTATTTAAGTACAGAAGCCAACTTCCTAGCGCTGCCAAAAGCGGAGATACGCCCGTTTGAACTTTAGGAGAGACGTAGACGGTTAGAGTGTCTCGTTGTCTTCGTCTCTAGCCCCCTGAATTTCAAAATTTTGTATCTCGGCTCCTAMTTGAGCTAGAAGATTGGTTTTTGAACCGAAATTTGGGGTTTTTCTCCAATTTTTCGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27819</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>211175</contig_pos>
        <strand></strand>
        <context>aaccgaaatt[T/G]gGGKTTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TGTATCTCGGCTCCTAATTGAGCTAGAAGATTGGTTTTTGAACCGAAATT</left_flank>
        <right_flank>GGGGTTTTTCTCCAATTTTTCGATTGGTCCCTATTTGTTAACTTTACCCC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAACTGATTAATTTTTTAGAAGATTATGAAGCTAAAAAATTTCTTCAATTTTGTCTAAAAACCAATTTTCTAGCACTTCTGGAAGCCGAGATACGCCTCTTCAAAGATTGGTGGGCAAGAGACGCAGACAACGAGATACGCTGCGTCTCTAACCACACAAATTTTAAACTGTTGTATCTCGGCTCCTAGATGGACTAGAAAACTGATTTTTAGACAGCTTGACAGGAAATTTTTAGCTCTACAAGTTCCTAAAAAATTTCTTTTTTTTTGAAATCTCTGGTGTTTTTGAAATTCTAGAAAATACAAATAAAATTGCTTATTTAAGTACAGAAGCCAACTTCCTAGCGCTGCCAAAAGCGGAGATACGCCCGTTTGAACTTTAGGAGAGACGTAGACGGTTAGAGTGTCTCGTTGTCTTCGTCTCTAGCCCCCTGAATTTCAAAATTTTGTATCTCGGCTCCTAATTGAGCTAGAAGATTGGTTTTTGAACCGAAATTTGGGGTTTTTCTCCAATTTTTCGATTGGTCCCTATTTGTTAACTTTACCCCTATAATAAATACCGTTTATTGTCCCATACACAAGTAAATATTTTCCCAGACGAATCAGCGCTCCAATCCTCTTCACCTTCTGGTATACCCCAACCGGATGGAGGTCCTTCTTTATCGGTGTCGATTTCACACTTTAGTGTAGCTGAGGTACCGTAATACAGATGTTGAAAAGATTGCGTGGGAATGGGAAAGAACAATAAACCGGATGGATTAAAGGTGGCAGTCTGTTTGTCTAGATGTCCGCAAATGCAAAACTGTCTGAAAAAGGAGCAATATGGATGTTTGAAAATCGTCAAAAAAGTCAGGATTGCGAAATTTGCGACCCCTCGATGTTCCCGAAATTCTACAGTAAAACCAGTACTAATTTGTTCCAATTCCCCTAATCATGTCCCAATGATCTTTATGACAATCGTGGCGCAAGGTGTTCCTTCTCTAAAATGTTGCCATCTT</canonical>
            <polymorphic>AAAAACTGATTAATTTTTTAGAAGATTATGAAGCTAAAAAATTTCTTCAATTTTGTCTAAAAACCAATTTTCTAGCACTTCTGGAAGCCGAGATACGCCTCTTCAAAGATTGGTGGGCAAGAGACGCAGACAACGAGATACGCTGCGTCTCTAACCACACAAATTTTAAACTGTTGTATCTCGGCTCCTAGATGGACTAGAAAACTGATTTTTAGACAGCTTGACAGGAAATTTTTAGCTCTACAAGTTCCTAAAAAATTTCTTTTTTTTTGAAATCTCTGGTGTTTTTGAAATTCTAGAAAATACAAATAAAATTGCTTATTTAAGTACAGAAGCCAACTTCCTAGCGCTGCCAAAAGCGGAGATACGCCCGTTTGAACTTTAGGAGAGACGTAGACGGTTAGAGTGTCTCGTTGTCTTCGTCTCTAGCCCCCTGAATTTCAAAATTTTGTATCTCGGCTCCTAATTGAGCTAGAAGATTGGTTTTTGAACCGAAATTKGGGGTTTTTCTCCAATTTTTCGATTGGTCCCTATTTGTTAACTTTACCCCTATAATAAATACCGTTTATTGTCCCATACACAAGTAAATATTTTCCCAGACGAATCAGCGCTCCAATCCTCTTCACCTTCTGGTATACCCCAACCGGATGGAGGTCCTTCTTTATCGGTGTCGATTTCACACTTTAGTGTAGCTGAGGTACCGTAATACAGATGTTGAAAAGATTGCGTGGGAATGGGAAAGAACAATAAACCGGATGGATTAAAGGTGGCAGTCTGTTTGTCTAGATGTCCGCAAATGCAAAACTGTCTGAAAAAGGAGCAATATGGATGTTTGAAAATCGTCAAAAAAGTCAGGATTGCGAAATTTGCGACCCCTCGATGTTCCCGAAATTCTACAGTAAAACCAGTACTAATTTGTTCCAATTCCCCTAATCATGTCCCAATGATCTTTATGACAATCGTGGCGCAAGGTGTTCCTTCTCTAAAATGTTGCCATCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>368 145 122 111 68 51 39 35 27 26 8</canonical_bands>
                <polymorphic_bands>419 145 122 111 68 39 35 27 26 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTCTGGTGTTTTTGAAATTCT</pcr_primer_p1>
		<pcr_primer_p2>CGGTATTTATTATAGGGGTAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>290</pcr_amplicon_size>
		<canonical_amplicon>ATCTCTGGTGTTTTTGAAATTCTAGAAAATACAAATAAAATTGCTTATTTAAGTACAGAAGCCAACTTCCTAGCGCTGCCAAAAGCGGAGATACGCCCGTTTGAACTTTAGGAGAGACGTAGACGGTTAGAGTGTCTCGTTGTCTTCGTCTCTAGCCCCCTGAATTTCAAAATTTTGTATCTCGGCTCCTAATTGAGCTAGAAGATTGGTTTTTGAACCGAAATTTGGGGTTTTTCTCCAATTTTTCGATTGGTCCCTATTTGTTAACTTTACCCCTATAATAAATACCG</canonical_amplicon>
		<polymorphic_amplicon>ATCTCTGGTGTTTTTGAAATTCTAGAAAATACAAATAAAATTGCTTATTTAAGTACAGAAGCCAACTTCCTAGCGCTGCCAAAAGCGGAGATACGCCCGTTTGAACTTTAGGAGAGACGTAGACGGTTAGAGTGTCTCGTTGTCTTCGTCTCTAGCCCCCTGAATTTCAAAATTTTGTATCTCGGCTCCTAATTGAGCTAGAAGATTGGTTTTTGAACCGAAATTKGGGGTTTTTCTCCAATTTTTCGATTGGTCCCTATTTGTTAACTTTACCCCTATAATAAATACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27820</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>211179</contig_pos>
        <strand></strand>
        <context>gaaattkgGG[G/T]TTTTTCTCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTCGGCTCCTAATTGAGCTAGAAGATTGGTTTTTGAACCGAAATTTGGG</left_flank>
        <right_flank>TTTTTCTCCAATTTTTCGATTGGTCCCTATTTGTTAACTTTACCCCTATA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGATTAATTTTTTAGAAGATTATGAAGCTAAAAAATTTCTTCAATTTTGTCTAAAAACCAATTTTCTAGCACTTCTGGAAGCCGAGATACGCCTCTTCAAAGATTGGTGGGCAAGAGACGCAGACAACGAGATACGCTGCGTCTCTAACCACACAAATTTTAAACTGTTGTATCTCGGCTCCTAGATGGACTAGAAAACTGATTTTTAGACAGCTTGACAGGAAATTTTTAGCTCTACAAGTTCCTAAAAAATTTCTTTTTTTTTGAAATCTCTGGTGTTTTTGAAATTCTAGAAAATACAAATAAAATTGCTTATTTAAGTACAGAAGCCAACTTCCTAGCGCTGCCAAAAGCGGAGATACGCCCGTTTGAACTTTAGGAGAGACGTAGACGGTTAGAGTGTCTCGTTGTCTTCGTCTCTAGCCCCCTGAATTTCAAAATTTTGTATCTCGGCTCCTAATTGAGCTAGAAGATTGGTTTTTGAACCGAAATTTGGGGTTTTTCTCCAATTTTTCGATTGGTCCCTATTTGTTAACTTTACCCCTATAATAAATACCGTTTATTGTCCCATACACAAGTAAATATTTTCCCAGACGAATCAGCGCTCCAATCCTCTTCACCTTCTGGTATACCCCAACCGGATGGAGGTCCTTCTTTATCGGTGTCGATTTCACACTTTAGTGTAGCTGAGGTACCGTAATACAGATGTTGAAAAGATTGCGTGGGAATGGGAAAGAACAATAAACCGGATGGATTAAAGGTGGCAGTCTGTTTGTCTAGATGTCCGCAAATGCAAAACTGTCTGAAAAAGGAGCAATATGGATGTTTGAAAATCGTCAAAAAAGTCAGGATTGCGAAATTTGCGACCCCTCGATGTTCCCGAAATTCTACAGTAAAACCAGTACTAATTTGTTCCAATTCCCCTAATCATGTCCCAATGATCTTTATGACAATCGTGGCGCAAGGTGTTCCTTCTCTAAAATGTTGCCATCTTTGCC</canonical>
            <polymorphic>ACTGATTAATTTTTTAGAAGATTATGAAGCTAAAAAATTTCTTCAATTTTGTCTAAAAACCAATTTTCTAGCACTTCTGGAAGCCGAGATACGCCTCTTCAAAGATTGGTGGGCAAGAGACGCAGACAACGAGATACGCTGCGTCTCTAACCACACAAATTTTAAACTGTTGTATCTCGGCTCCTAGATGGACTAGAAAACTGATTTTTAGACAGCTTGACAGGAAATTTTTAGCTCTACAAGTTCCTAAAAAATTTCTTTTTTTTTGAAATCTCTGGTGTTTTTGAAATTCTAGAAAATACAAATAAAATTGCTTATTTAAGTACAGAAGCCAACTTCCTAGCGCTGCCAAAAGCGGAGATACGCCCGTTTGAACTTTAGGAGAGACGTAGACGGTTAGAGTGTCTCGTTGTCTTCGTCTCTAGCCCCCTGAATTTCAAAATTTTGTATCTCGGCTCCTAATTGAGCTAGAAGATTGGTTTTTGAACCGAAATTTGGGKTTTTTCTCCAATTTTTCGATTGGTCCCTATTTGTTAACTTTACCCCTATAATAAATACCGTTTATTGTCCCATACACAAGTAAATATTTTCCCAGACGAATCAGCGCTCCAATCCTCTTCACCTTCTGGTATACCCCAACCGGATGGAGGTCCTTCTTTATCGGTGTCGATTTCACACTTTAGTGTAGCTGAGGTACCGTAATACAGATGTTGAAAAGATTGCGTGGGAATGGGAAAGAACAATAAACCGGATGGATTAAAGGTGGCAGTCTGTTTGTCTAGATGTCCGCAAATGCAAAACTGTCTGAAAAAGGAGCAATATGGATGTTTGAAAATCGTCAAAAAAGTCAGGATTGCGAAATTTGCGACCCCTCGATGTTCCCGAAATTCTACAGTAAAACCAGTACTAATTTGTTCCAATTCCCCTAATCATGTCCCAATGATCTTTATGACAATCGTGGCGCAAGGTGTTCCTTCTCTAAAATGTTGCCATCTTTGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTCTGGTGTTTTTGAAATTCT</pcr_primer_p1>
		<pcr_primer_p2>CGGTATTTATTATAGGGGTAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>290</pcr_amplicon_size>
		<canonical_amplicon>ATCTCTGGTGTTTTTGAAATTCTAGAAAATACAAATAAAATTGCTTATTTAAGTACAGAAGCCAACTTCCTAGCGCTGCCAAAAGCGGAGATACGCCCGTTTGAACTTTAGGAGAGACGTAGACGGTTAGAGTGTCTCGTTGTCTTCGTCTCTAGCCCCCTGAATTTCAAAATTTTGTATCTCGGCTCCTAATTGAGCTAGAAGATTGGTTTTTGAACCGAAATTTGGGGTTTTTCTCCAATTTTTCGATTGGTCCCTATTTGTTAACTTTACCCCTATAATAAATACCG</canonical_amplicon>
		<polymorphic_amplicon>ATCTCTGGTGTTTTTGAAATTCTAGAAAATACAAATAAAATTGCTTATTTAAGTACAGAAGCCAACTTCCTAGCGCTGCCAAAAGCGGAGATACGCCCGTTTGAACTTTAGGAGAGACGTAGACGGTTAGAGTGTCTCGTTGTCTTCGTCTCTAGCCCCCTGAATTTCAAAATTTTGTATCTCGGCTCCTAATTGAGCTAGAAGATTGGTTTTTGAACCGAAATTTGGGKTTTTTCTCCAATTTTTCGATTGGTCCCTATTTGTTAACTTTACCCCTATAATAAATACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27821</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>299960</contig_pos>
        <strand>+</strand>
        <context>CTTAATTCTG[A/T]AAAAAGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCTGAAATGGAAATTTTGAATTTCCAGCCAAATTATGGCCTTAATTCTG</left_flank>
        <right_flank>AAAAAGAAAAAAAAATTTTTCAAAAAATTTCAGATTGTCTGAAATTTGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCAAAGTTTTTTTTGAATTAGTGTAGTTTGTAGTTTGCAGTCCCTTCTCTTACTGTATACACGAAACCATCATCATTGAAACATTCAAATGAGTAATCATTACTCCTTTTGGCTTCCCAGTGGTCCCTGAGGAGTACGGTAGAAGAACCAAATCGTTCATTGGATCGATTTTCGGCATTTTCAAGTTTCGAATCAATCTAGAAGTCAAAACTTCGAATTCAATCACTGGTTTCGGAGAATTCGGGGCAATCGAAACTACATTTTTCACGAATTTCAAATTTTTGGAAGCTTCCAAAACGACTGGAAGTGTTTGAGCATCAGCAAGAATCAGTTGAGAGTGAGAGTCCTCGATTTGGTAGTTCATTTCGTCTGAAAAAAAAAGAAATTTCGAAAAAAATTTTTTTTTTTGAAAAATCGGAGAGCCCTAATTTTTGATGTTCTCCAATAGTCTGAAATGGAAATTTTGAATTTCCAGCCAAATTATGGCCTTAATTCTGAAAAAAGAAAAAAAAATTTTTCAAAAAATTTCAGATTGTCTGAAATTTGCAGACTTACACGCTGTGAATTGACTGGAAGCCGCTGAAACCACCAGTCCGGCTCTCCAGGCTCCCATACAAAACGCGAAACATCTCCAGTTGTTGTGAGCAGCCAACAGTACAACGTCTCCCTGAAAAACACACTGAGACTACAAACTACAAAAACTACAAATGTTTTTTTCCAAAAATTTCAAAGTTTTTTTTCAATTTTCATTATCCCCAGGTTTCGAAATTTCCTACCTTTTTATATCCATTCTCCAGGAACCACTCGGAAATTTGAATAATTTTTTTTTTCAAATTTTTATAGGAAATCGAATCTTGCTCATTTTCGGCAGTAGTGAATGCTAAACAATTCGGGTCATTCTTTTCATGCCTCTCAAATCGATCCATCAAAAAATCATGGACCGGTGTGTCGTGATGCTCCAACTTCTCCCCATGGAAAATCATTGTTTTTCTGAAATT</canonical>
            <polymorphic>ACTCAAAGTTTTTTTTGAATTAGTGTAGTTTGTAGTTTGCAGTCCCTTCTCTTACTGTATACACGAAACCATCATCATTGAAACATTCAAATGAGTAATCATTACTCCTTTTGGCTTCCCAGTGGTCCCTGAGGAGTACGGTAGAAGAACCAAATCGTTCATTGGATCGATTTTCGGCATTTTCAAGTTTCGAATCAATCTAGAAGTCAAAACTTCGAATTCAATCACTGGTTTCGGAGAATTCGGGGCAATCGAAACTACATTTTTCACGAATTTCAAATTTTTGGAAGCTTCCAAAACGACTGGAAGTGTTTGAGCATCAGCAAGAATCAGTTGAGAGTGAGAGTCCTCGATTTGGTAGTTCATTTCGTCTGAAAAAAAAAGAAATTTCGAAAAAAATTTTTTTTTTTGAAAAATCGGAGAGCCCTAATTTTTGATGTTCTCCAATAGTCTGAAATGGAAATTTTGAATTTCCAGCCAAATTATGGCCTTAATTCTGWAAAAAGAAAAAAAAATTTTTCAAAAAATTTCAGATTGTCTGAAATTTGCAGACTTACACGCTGTGAATTGACTGGAAGCCGCTGAAACCACCAGTCCGGCTCTCCAGGCTCCCATACAAAACGCGAAACATCTCCAGTTGTTGTGAGCAGCCAACAGTACAACGTCTCCCTGAAAAACACACTGAGACTACAAACTACAAAAACTACAAATGTTTTTTTCCAAAAATTTCAAAGTTTTTTTTCAATTTTCATTATCCCCAGGTTTCGAAATTTCCTACCTTTTTATATCCATTCTCCAGGAACCACTCGGAAATTTGAATAATTTTTTTTTTCAAATTTTTATAGGAAATCGAATCTTGCTCATTTTCGGCAGTAGTGAATGCTAAACAATTCGGGTCATTCTTTTCATGCCTCTCAAATCGATCCATCAAAAAATCATGGACCGGTGTGTCGTGATGCTCCAACTTCTCCCCATGGAAAATCATTGTTTTTCTGAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>269 236 185 137 46 45 34 34 8 6</canonical_bands>
                <polymorphic_bands>269 236 185 137 79 46 34 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAGTCTGAAATGGAAATTTTG</pcr_primer_p1>
		<pcr_primer_p2>TTGTAGTCTCAGTGTGTTTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATAGTCTGAAATGGAAATTTTGAATTTCCAGCCAAATTATGGCCTTAATTCTGAAAAAAGAAAAAAAAATTTTTCAAAAAATTTCAGATTGTCTGAAATTTGCAGACTTACACGCTGTGAATTGACTGGAAGCCGCTGAAACCACCAGTCCGGCTCTCCAGGCTCCCATACAAAACGCGAAACATCTCCAGTTGTTGTGAGCAGCCAACAGTACAACGTCTCCCTGAAAAACACACTGAGACTACAA</canonical_amplicon>
		<polymorphic_amplicon>AATAGTCTGAAATGGAAATTTTGAATTTCCAGCCAAATTATGGCCTTAATTCTGWAAAAAGAAAAAAAAATTTTTCAAAAAATTTCAGATTGTCTGAAATTTGCAGACTTACACGCTGTGAATTGACTGGAAGCCGCTGAAACCACCAGTCCGGCTCTCCAGGCTCCCATACAAAACGCGAAACATCTCCAGTTGTTGTGAGCAGCCAACAGTACAACGTCTCCCTGAAAAACACACTGAGACTACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27822</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>301407</contig_pos>
        <strand>+</strand>
        <context>TCATGATCAA[A/C]AGTCAAGCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAA</left_flank>
        <right_flank>AGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTAAAAAATCAATTTTTCGCTCAATTCAGTTATAAAACCTCCGATTTTATGCCATTTTTCTTTTCTCGCCGCGAAATTCGACGAATGCTGTATTTTGTCGTCAAATCCAGTGCACTCGGTGTTTGCACAAAAACCAAGCTACCGTATCCCAAAAAATGTGTAAACCAATGGGGGAAAAAAGGTTTCAGGGGTAGTTTTGGCCGCGGAATTCGAATTTTTGGTTAGTTTTTAGATGGGAAATCCGAAAAAGGAAGAAATTTCAAATTTTTGAATCAAAAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTCGAAAGAGCTTCAAAATGAGTATACTCATCGCTATCTTTGGAAAAAAAATTTTTTTC</canonical>
            <polymorphic>TCCTAAAAAATCAATTTTTCGCTCAATTCAGTTATAAAACCTCCGATTTTATGCCATTTTTCTTTTCTCGCCGCGAAATTCGACGAATGCTGTATTTTGTCGTCAAATCCAGTGCACTCGGTGTTTGCACAAAAACCAAGCTACCGTATCCCAAAAAATGTGTAAACCAATGGGGGAAAAAAGGTTTCAGGGGTAGTTTTGGCCGCGGAATTCGAATTTTTGGTTAGTTTTTAGATGGGAAATCCGAAAAAGGAAGAAATTTCAAATTTTTGAATCAAAAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAMAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTCGAAAGAGCTTCAAAATGAGTATACTCATCGCTATCTTTGGAAAAAAAATTTTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCCGAAAAAGGAAGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGTATTCTATGCTCAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>427</pcr_amplicon_size>
		<canonical_amplicon>AAATCCGAAAAAGGAAGAAATTTCAAATTTTTGAATCAAAAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAATCCGAAAAAGGAAGAAATTTCAAATTTTTGAATCAAAAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAMAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27823</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>301496</contig_pos>
        <strand></strand>
        <context>tcataaaaaa[T/A]ttttttttga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAA</left_flank>
        <right_flank>TTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTATTTTGTCGTCAAATCCAGTGCACTCGGTGTTTGCACAAAAACCAAGCTACCGTATCCCAAAAAATGTGTAAACCAATGGGGGAAAAAAGGTTTCAGGGGTAGTTTTGGCCGCGGAATTCGAATTTTTGGTTAGTTTTTAGATGGGAAATCCGAAAAAGGAAGAAATTTCAAATTTTTGAATCAAAAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTCGAAAGAGCTTCAAAATGAGTATACTCATCGCTATCTTTGGAAAAAAAATTTTTTTCAAAAAAAACTACAGTAACCCAAAAAAAATTTTTTTCTCTCAAACCTAGACATGTTCATACTCATTTTGAAGCTCTGAACTTCCCAAATT</canonical>
            <polymorphic>CTGTATTTTGTCGTCAAATCCAGTGCACTCGGTGTTTGCACAAAAACCAAGCTACCGTATCCCAAAAAATGTGTAAACCAATGGGGGAAAAAAGGTTTCAGGGGTAGTTTTGGCCGCGGAATTCGAATTTTTGGTTAGTTTTTAGATGGGAAATCCGAAAAAGGAAGAAATTTCAAATTTTTGAATCAAAAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAAWTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTCGAAAGAGCTTCAAAATGAGTATACTCATCGCTATCTTTGGAAAAAAAATTTTTTTCAAAAAAAACTACAGTAACCCAAAAAAAATTTTTTTCTCTCAAACCTAGACATGTTCATACTCATTTTGAAGCTCTGAACTTCCCAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>146 134 119 107 87 66 63 44 43 36 28 24 19 15 15 12 11 10 8 7 6</canonical_bands>
                <polymorphic_bands>146 134 119 107 87 66 63 44 43 36 35 28 19 15 15 12 10 8 7 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>134 119 117 84 59 50 44 43 36 33 29 24 23 23 22 19 19 15 15 12 11 10 9 8 7 7 7 6 6 5 4</canonical_bands>
                <polymorphic_bands>134 119 117 84 59 50 44 43 36 35 33 29 23 23 22 19 19 15 15 12 10 9 8 7 7 7 6 6 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCAAGCAAATTTTTGTTATCAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTCATTTTTGTATTCTATGC</pcr_primer_p2>
		<pcr_amplicon_size>173</pcr_amplicon_size>
		<canonical_amplicon>GTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAAWTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27824</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>301582</contig_pos>
        <strand>+</strand>
        <context>AATGAGAAAA[A/C]TTATGTTAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAA</left_flank>
        <right_flank>TTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAAAGGTTTCAGGGGTAGTTTTGGCCGCGGAATTCGAATTTTTGGTTAGTTTTTAGATGGGAAATCCGAAAAAGGAAGAAATTTCAAATTTTTGAATCAAAAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTCGAAAGAGCTTCAAAATGAGTATACTCATCGCTATCTTTGGAAAAAAAATTTTTTTCAAAAAAAACTACAGTAACCCAAAAAAAATTTTTTTCTCTCAAACCTAGACATGTTCATACTCATTTTGAAGCTCTGAACTTCCCAAATTCAAATTAGGCGCCTAAAACCCGCCTACCTCGATCGCCTGCAACAATATCAGCGAAACACTGCCAAACGTCTTTCGACATGCCCTTC</canonical>
            <polymorphic>GAAAAAAGGTTTCAGGGGTAGTTTTGGCCGCGGAATTCGAATTTTTGGTTAGTTTTTAGATGGGAAATCCGAAAAAGGAAGAAATTTCAAATTTTTGAATCAAAAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAMTTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTCGAAAGAGCTTCAAAATGAGTATACTCATCGCTATCTTTGGAAAAAAAATTTTTTTCAAAAAAAACTACAGTAACCCAAAAAAAATTTTTTTCTCTCAAACCTAGACATGTTCATACTCATTTTGAAGCTCTGAACTTCCCAAATTCAAATTAGGCGCCTAAAACCCGCCTACCTCGATCGCCTGCAACAATATCAGCGAAACACTGCCAAACGTCTTTCGACATGCCCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>134 117 84 84 59 50 44 43 36 33 33 29 24 23 23 22 19 19 15 15 12 11 10 9 8 7 7 7 6 6 6 5</canonical_bands>
                <polymorphic_bands>134 117 84 84 62 59 50 44 43 36 33 24 23 23 22 19 19 15 15 12 11 10 9 8 7 7 7 6 6 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAAATTTTTGTTATCATTCTTT</pcr_primer_p1>
		<pcr_primer_p2>ACGGATCAGTACATTGAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>295</pcr_amplicon_size>
		<canonical_amplicon>GCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGT</canonical_amplicon>
		<polymorphic_amplicon>GCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAMTTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27825</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>301606</contig_pos>
        <strand>+</strand>
        <context>ACAGAAGAMG[A/C]ACMYMYAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACG</left_flank>
        <right_flank>ACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCCGCGGAATTCGAATTTTTGGTTAGTTTTTAGATGGGAAATCCGAAAAAGGAAGAAATTTCAAATTTTTGAATCAAAAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTCGAAAGAGCTTCAAAATGAGTATACTCATCGCTATCTTTGGAAAAAAAATTTTTTTCAAAAAAAACTACAGTAACCCAAAAAAAATTTTTTTCTCTCAAACCTAGACATGTTCATACTCATTTTGAAGCTCTGAACTTCCCAAATTCAAATTAGGCGCCTAAAACCCGCCTACCTCGATCGCCTGCAACAATATCAGCGAAACACTGCCAAACGTCTTTCGACATGCCCTTCGCGTCGCCACAAATGAAAATTTTC</canonical>
            <polymorphic>TGGCCGCGGAATTCGAATTTTTGGTTAGTTTTTAGATGGGAAATCCGAAAAAGGAAGAAATTTCAAATTTTTGAATCAAAAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGMACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTCGAAAGAGCTTCAAAATGAGTATACTCATCGCTATCTTTGGAAAAAAAATTTTTTTCAAAAAAAACTACAGTAACCCAAAAAAAATTTTTTTCTCTCAAACCTAGACATGTTCATACTCATTTTGAAGCTCTGAACTTCCCAAATTCAAATTAGGCGCCTAAAACCCGCCTACCTCGATCGCCTGCAACAATATCAGCGAAACACTGCCAAACGTCTTTCGACATGCCCTTCGCGTCGCCACAAATGAAAATTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATTGAGCATAGAATACAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAAACGGATCAGTACATT</pcr_primer_p2>
		<pcr_amplicon_size>167</pcr_amplicon_size>
		<canonical_amplicon>CAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>CAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGMACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27826</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>301611</contig_pos>
        <strand>+</strand>
        <context>AGAMGMACMY[A/C]YAAATTGawa</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCT</left_flank>
        <right_flank>AAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGGAATTCGAATTTTTGGTTAGTTTTTAGATGGGAAATCCGAAAAAGGAAGAAATTTCAAATTTTTGAATCAAAAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTCGAAAGAGCTTCAAAATGAGTATACTCATCGCTATCTTTGGAAAAAAAATTTTTTTCAAAAAAAACTACAGTAACCCAAAAAAAATTTTTTTCTCTCAAACCTAGACATGTTCATACTCATTTTGAAGCTCTGAACTTCCCAAATTCAAATTAGGCGCCTAAAACCCGCCTACCTCGATCGCCTGCAACAATATCAGCGAAACACTGCCAAACGTCTTTCGACATGCCCTTCGCGTCGCCACAAATGAAAATTTTCGCGTT</canonical>
            <polymorphic>GCGGAATTCGAATTTTTGGTTAGTTTTTAGATGGGAAATCCGAAAAAGGAAGAAATTTCAAATTTTTGAATCAAAAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTMAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTCGAAAGAGCTTCAAAATGAGTATACTCATCGCTATCTTTGGAAAAAAAATTTTTTTCAAAAAAAACTACAGTAACCCAAAAAAAATTTTTTTCTCTCAAACCTAGACATGTTCATACTCATTTTGAAGCTCTGAACTTCCCAAATTCAAATTAGGCGCCTAAAACCCGCCTACCTCGATCGCCTGCAACAATATCAGCGAAACACTGCCAAACGTCTTTCGACATGCCCTTCGCGTCGCCACAAATGAAAATTTTCGCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATTGAGCATAGAATACAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAAACGGATCAGTACATT</pcr_primer_p2>
		<pcr_amplicon_size>167</pcr_amplicon_size>
		<canonical_amplicon>CAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>CAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTMAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27827</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>301612</contig_pos>
        <strand>+</strand>
        <context>GAMGMACMYM[C/T]AAATTGawat</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTG</left_flank>
        <right_flank>AAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGAATTCGAATTTTTGGTTAGTTTTTAGATGGGAAATCCGAAAAAGGAAGAAATTTCAAATTTTTGAATCAAAAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTCGAAAGAGCTTCAAAATGAGTATACTCATCGCTATCTTTGGAAAAAAAATTTTTTTCAAAAAAAACTACAGTAACCCAAAAAAAATTTTTTTCTCTCAAACCTAGACATGTTCATACTCATTTTGAAGCTCTGAACTTCCCAAATTCAAATTAGGCGCCTAAAACCCGCCTACCTCGATCGCCTGCAACAATATCAGCGAAACACTGCCAAACGTCTTTCGACATGCCCTTCGCGTCGCCACAAATGAAAATTTTCGCGTTT</canonical>
            <polymorphic>CGGAATTCGAATTTTTGGTTAGTTTTTAGATGGGAAATCCGAAAAAGGAAGAAATTTCAAATTTTTGAATCAAAAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGYAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTCGAAAGAGCTTCAAAATGAGTATACTCATCGCTATCTTTGGAAAAAAAATTTTTTTCAAAAAAAACTACAGTAACCCAAAAAAAATTTTTTTCTCTCAAACCTAGACATGTTCATACTCATTTTGAAGCTCTGAACTTCCCAAATTCAAATTAGGCGCCTAAAACCCGCCTACCTCGATCGCCTGCAACAATATCAGCGAAACACTGCCAAACGTCTTTCGACATGCCCTTCGCGTCGCCACAAATGAAAATTTTCGCGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATTGAGCATAGAATACAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAAACGGATCAGTACATT</pcr_primer_p2>
		<pcr_amplicon_size>167</pcr_amplicon_size>
		<canonical_amplicon>CAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>CAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGYAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27828</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>301620</contig_pos>
        <strand></strand>
        <context>YMYAAATTGa[A/T]atttttcaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGA</left_flank>
        <right_flank>ATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTTTTGGTTAGTTTTTAGATGGGAAATCCGAAAAAGGAAGAAATTTCAAATTTTTGAATCAAAAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTCGAAAGAGCTTCAAAATGAGTATACTCATCGCTATCTTTGGAAAAAAAATTTTTTTCAAAAAAAACTACAGTAACCCAAAAAAAATTTTTTTCTCTCAAACCTAGACATGTTCATACTCATTTTGAAGCTCTGAACTTCCCAAATTCAAATTAGGCGCCTAAAACCCGCCTACCTCGATCGCCTGCAACAATATCAGCGAAACACTGCCAAACGTCTTTCGACATGCCCTTCGCGTCGCCACAAATGAAAATTTTCGCGTTTTCCGACGG</canonical>
            <polymorphic>GAATTTTTGGTTAGTTTTTAGATGGGAAATCCGAAAAAGGAAGAAATTTCAAATTTTTGAATCAAAAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAWATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTCGAAAGAGCTTCAAAATGAGTATACTCATCGCTATCTTTGGAAAAAAAATTTTTTTCAAAAAAAACTACAGTAACCCAAAAAAAATTTTTTTCTCTCAAACCTAGACATGTTCATACTCATTTTGAAGCTCTGAACTTCCCAAATTCAAATTAGGCGCCTAAAACCCGCCTACCTCGATCGCCTGCAACAATATCAGCGAAACACTGCCAAACGTCTTTCGACATGCCCTTCGCGTCGCCACAAATGAAAATTTTCGCGTTTTCCGACGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>146 134 107 107 87 66 59 44 43 36 28 24 21 19 15 15 12 11 10 8 7 1</canonical_bands>
                <polymorphic_bands>146 134 107 107 97 66 59 44 43 36 28 24 21 19 15 15 12 11 8 7 1</polymorphic_bands>
            </assay>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>479 428 74 19</canonical_bands>
                <polymorphic_bands>907 74 19</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>134 117 101 84 59 50 44 43 36 33 29 24 23 23 22 21 19 19 15 15 12 11 10 9 8 7 7 7 6 6 5 1</canonical_bands>
                <polymorphic_bands>134 117 101 84 59 50 44 43 36 33 29 24 23 23 22 21 19 19 16 15 15 12 11 9 8 7 7 7 6 5 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAATTGAGCATAGAATACAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAAACGGATCAGTACATT</pcr_primer_p2>
		<pcr_amplicon_size>167</pcr_amplicon_size>
		<canonical_amplicon>CAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>CAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAWATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27829</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>301634</contig_pos>
        <strand></strand>
        <context>tttcaaaatt[T/C]caaaaaaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATT</left_flank>
        <right_flank>CAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCA</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTAGATGGGAAATCCGAAAAAGGAAGAAATTTCAAATTTTTGAATCAAAAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTCGAAAGAGCTTCAAAATGAGTATACTCATCGCTATCTTTGGAAAAAAAATTTTTTTCAAAAAAAACTACAGTAACCCAAAAAAAATTTTTTTCTCTCAAACCTAGACATGTTCATACTCATTTTGAAGCTCTGAACTTCCCAAATTCAAATTAGGCGCCTAAAACCCGCCTACCTCGATCGCCTGCAACAATATCAGCGAAACACTGCCAAACGTCTTTCGACATGCCCTTCGCGTCGCCACAAATGAAAATTTTCGCGTTTTCCGACGGCTCGAGGAATGGCC</canonical>
            <polymorphic>TTTTTAGATGGGAAATCCGAAAAAGGAAGAAATTTCAAATTTTTGAATCAAAAAAGAATTTTTTCGAAAATTTTTTTTTTCGTTTAGCCACAATTGAATTTAAAAAAAACTGATAAAAAGAAAATAAAAAAGCAAGACCAAATTTGGAAATTTTTTGTGTTATCGGTTGATCAGTGTCTTATCGATAAGAGATTGCGCGGCGGTGAAGTGCTGGGGAGAACAGTGTAGCCGTCGCCGCGTCGACCACGGCGTGGTCAGTGAATCATGATCAAAAGTCAAGCAAATTTTTGTTATCATTCTTTTTTTATTATTCTAGCACAAAACCTACAAAAAATTGGAAAAATTGAAAATTCATAAAAAATTTTTTTTTGACATTTTTGAAAAATTTTTTTTTCAAAAATTCAAAAAAAAATACAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTYCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTGAGATCCATCAGCTTCTTCTTGGCGTCCAAATCGGCGATTTCTGGAAAAAAAAACGTTTAGTGGCCTAGTTTTTCGAATTTCTAGGCCATCAAGATGAAAATTAGTCCATGCGATCTAGATATTCTGATCCAGCGTCGAAAGAGCTTCAAAATGAGTATACTCATCGCTATCTTTGGAAAAAAAATTTTTTTCAAAAAAAACTACAGTAACCCAAAAAAAATTTTTTTCTCTCAAACCTAGACATGTTCATACTCATTTTGAAGCTCTGAACTTCCCAAATTCAAATTAGGCGCCTAAAACCCGCCTACCTCGATCGCCTGCAACAATATCAGCGAAACACTGCCAAACGTCTTTCGACATGCCCTTCGCGTCGCCACAAATGAAAATTTTCGCGTTTTCCGACGGCTCGAGGAATGGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>146 134 107 107 87 66 59 44 36 35 30 28 24 19 15 15 12 11 10 8 7</canonical_bands>
                <polymorphic_bands>146 134 107 107 87 66 59 44 36 35 30 28 25 24 19 15 12 11 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAATTGAGCATAGAATACAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAAACGGATCAGTACATT</pcr_primer_p2>
		<pcr_amplicon_size>167</pcr_amplicon_size>
		<canonical_amplicon>CAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTTCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>CAAAATTGAGCATAGAATACAAAAATGAGAAAAATTATGTTAATATAACAGAAGACGAACCTGAAAATTGAAATTTTTCAAAATTYCAAAAAAAAAAATTTTCAATTTTTTTAAAAAATCAATAAAATTATCCCCAGACATCCTCAATGTACTGATCCGTTTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27830</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>376402</contig_pos>
        <strand>+</strand>
        <context>TCTCGCTTCT[A/T]TTTTCCCTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTCTGCGTCTCTCTGGGCTTTGTGTACTCTCTCTCTCTCTCTCGCTTCT</left_flank>
        <right_flank>TTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCTAATACTACAGTACTCCCGAACCCCAAAGCGTGGGAAGCTTTAGTGTCAAGTGTTCATCATCACCAGTGTTAACACACACACACACACACACACACACACACACACACACACACACACACACCAGAACGATTCAAGAATCCAGGTTAAAAGAGAGAGAGAGAGAGAGAGAGAGAAAAGTGATGAACACATCTCTCTCGTTCGCTCGGTCCCCCCCCCCTGGTTGCCTCCTGTGTATATATAATATATAAAATTCGGGAAAAAAGGCGAGAGAACAGAGAGACGCAGACACAAAGTTTCAAGTGCTTTCGTTCGGCTGCTGTGTCTGCGTCTCTCACGACTTCCAGTACTCTCTCGCCACCTTGTCCTTCTCTTCTCCCTTCGCCCAATGTTGTTCGGCCTATTCCATCGCCTCCCGATCGTTTGGGAAGAGAGAGAGAGAGAGTGTGTCTGCGTCTCTCTGGGCTTTGTGTACTCTCTCTCTCTCTCTCGCTTCTTTTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAAGCCAATGTTACCACAAAAAACGTGGGTTTTTTGGATCTGAAAATGGCCCAAAAAAGCTGAAAAATGACCCAAAAATCAGCATTTTCGATGGATTTTTGGCTCAAAATGGTCCAAAAATCATGTAAAATGGATTTTTGTCAAGAGTCTAAGGTGGTTTTAAGCCTAATTCAAGCCAAAAATTGGGTTCAAATTGACCCAAAAAGTTGGCATTTTTGGGCTTAAAATGGTCCAAAAATTAGGAAGGAAAAATGGAT</canonical>
            <polymorphic>GTTCTAATACTACAGTACTCCCGAACCCCAAAGCGTGGGAAGCTTTAGTGTCAAGTGTTCATCATCACCAGTGTTAACACACACACACACACACACACACACACACACACACACACACACACACACCAGAACGATTCAAGAATCCAGGTTAAAAGAGAGAGAGAGAGAGAGAGAGAGAAAAGTGATGAACACATCTCTCTCGTTCGCTCGGTCCCCCCCCCCTGGTTGCCTCCTGTGTATATATAATATATAAAATTCGGGAAAAAAGGCGAGAGAACAGAGAGACGCAGACACAAAGTTTCAAGTGCTTTCGTTCGGCTGCTGTGTCTGCGTCTCTCACGACTTCCAGTACTCTCTCGCCACCTTGTCCTTCTCTTCTCCCTTCGCCCAATGTTGTTCGGCCTATTCCATCGCCTCCCGATCGTTTGGGAAGAGAGAGAGAGAGAGTGTGTCTGCGTCTCTCTGGGCTTTGTGTACTCTCTCTCTCTCTCTCGCTTCTWTTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAAGCCAATGTTACCACAAAAAACGTGGGTTTTTTGGATCTGAAAATGGCCCAAAAAAGCTGAAAAATGACCCAAAAATCAGCATTTTCGATGGATTTTTGGCTCAAAATGGTCCAAAAATCATGTAAAATGGATTTTTGTCAAGAGTCTAAGGTGGTTTTAAGCCTAATTCAAGCCAAAAATTGGGTTCAAATTGACCCAAAAAGTTGGCATTTTTGGGCTTAAAATGGTCCAAAAATTAGGAAGGAAAAATGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGAGAGAGAGAGAGTGTGTCTG</pcr_primer_p1>
		<pcr_primer_p2>TCTAAAATCAAAATTTCCATGAC</pcr_primer_p2>
		<pcr_amplicon_size>293</pcr_amplicon_size>
		<canonical_amplicon>AGAGAGAGAGAGAGAGTGTGTCTGCGTCTCTCTGGGCTTTGTGTACTCTCTCTCTCTCTCTCGCTTCTTTTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGA</canonical_amplicon>
		<polymorphic_amplicon>AGAGAGAGAGAGAGAGTGTGTCTGCGTCTCTCTGGGCTTTGTGTACTCTCTCTCTCTCTCTCGCTTCTWTTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27831</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>376429</contig_pos>
        <strand></strand>
        <context>TTTATCCTTT[G/T]tggctagaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCTCTCTCTCTCTCTCGCTTCTTTTTTCCCTACATTTCGTTTATCCTTT</left_flank>
        <right_flank>TGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAAGCGTGGGAAGCTTTAGTGTCAAGTGTTCATCATCACCAGTGTTAACACACACACACACACACACACACACACACACACACACACACACACACACCAGAACGATTCAAGAATCCAGGTTAAAAGAGAGAGAGAGAGAGAGAGAGAGAAAAGTGATGAACACATCTCTCTCGTTCGCTCGGTCCCCCCCCCCTGGTTGCCTCCTGTGTATATATAATATATAAAATTCGGGAAAAAAGGCGAGAGAACAGAGAGACGCAGACACAAAGTTTCAAGTGCTTTCGTTCGGCTGCTGTGTCTGCGTCTCTCACGACTTCCAGTACTCTCTCGCCACCTTGTCCTTCTCTTCTCCCTTCGCCCAATGTTGTTCGGCCTATTCCATCGCCTCCCGATCGTTTGGGAAGAGAGAGAGAGAGAGTGTGTCTGCGTCTCTCTGGGCTTTGTGTACTCTCTCTCTCTCTCTCGCTTCTTTTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAAGCCAATGTTACCACAAAAAACGTGGGTTTTTTGGATCTGAAAATGGCCCAAAAAAGCTGAAAAATGACCCAAAAATCAGCATTTTCGATGGATTTTTGGCTCAAAATGGTCCAAAAATCATGTAAAATGGATTTTTGTCAAGAGTCTAAGGTGGTTTTAAGCCTAATTCAAGCCAAAAATTGGGTTCAAATTGACCCAAAAAGTTGGCATTTTTGGGCTTAAAATGGTCCAAAAATTAGGAAGGAAAAATGGATTTCAGACTATTTTTGGCCCTATTTTAA</canonical>
            <polymorphic>CCAAAGCGTGGGAAGCTTTAGTGTCAAGTGTTCATCATCACCAGTGTTAACACACACACACACACACACACACACACACACACACACACACACACACACCAGAACGATTCAAGAATCCAGGTTAAAAGAGAGAGAGAGAGAGAGAGAGAGAAAAGTGATGAACACATCTCTCTCGTTCGCTCGGTCCCCCCCCCCTGGTTGCCTCCTGTGTATATATAATATATAAAATTCGGGAAAAAAGGCGAGAGAACAGAGAGACGCAGACACAAAGTTTCAAGTGCTTTCGTTCGGCTGCTGTGTCTGCGTCTCTCACGACTTCCAGTACTCTCTCGCCACCTTGTCCTTCTCTTCTCCCTTCGCCCAATGTTGTTCGGCCTATTCCATCGCCTCCCGATCGTTTGGGAAGAGAGAGAGAGAGAGTGTGTCTGCGTCTCTCTGGGCTTTGTGTACTCTCTCTCTCTCTCTCGCTTCTTTTTTCCCTACATTTCGTTTATCCTTTKTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAAGCCAATGTTACCACAAAAAACGTGGGTTTTTTGGATCTGAAAATGGCCCAAAAAAGCTGAAAAATGACCCAAAAATCAGCATTTTCGATGGATTTTTGGCTCAAAATGGTCCAAAAATCATGTAAAATGGATTTTTGTCAAGAGTCTAAGGTGGTTTTAAGCCTAATTCAAGCCAAAAATTGGGTTCAAATTGACCCAAAAAGTTGGCATTTTTGGGCTTAAAATGGTCCAAAAATTAGGAAGGAAAAATGGATTTCAGACTATTTTTGGCCCTATTTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>129 128 87 78 66 59 56 56 55 46 23 23 20 19 14 13 13 11 10 10 10 7 7 6 6 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>133 129 128 87 66 59 56 56 46 23 23 20 19 14 13 13 11 10 10 10 7 7 6 6 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGTGTACTCTCTCTCTCTCTCTC</pcr_primer_p1>
		<pcr_primer_p2>TCTAAAATCAAAATTTCCATGAC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TTTGTGTACTCTCTCTCTCTCTCTCGCTTCTTTTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTGTGTACTCTCTCTCTCTCTCTCGCTTCTTTTTTCCCTACATTTCGTTTATCCTTTKTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27832</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>376441</contig_pos>
        <strand></strand>
        <context>ggctagaaaa[C/T]ggctgaaaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCTCGCTTCTTTTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAA</left_flank>
        <right_flank>GGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCTTTAGTGTCAAGTGTTCATCATCACCAGTGTTAACACACACACACACACACACACACACACACACACACACACACACACACACCAGAACGATTCAAGAATCCAGGTTAAAAGAGAGAGAGAGAGAGAGAGAGAGAAAAGTGATGAACACATCTCTCTCGTTCGCTCGGTCCCCCCCCCCTGGTTGCCTCCTGTGTATATATAATATATAAAATTCGGGAAAAAAGGCGAGAGAACAGAGAGACGCAGACACAAAGTTTCAAGTGCTTTCGTTCGGCTGCTGTGTCTGCGTCTCTCACGACTTCCAGTACTCTCTCGCCACCTTGTCCTTCTCTTCTCCCTTCGCCCAATGTTGTTCGGCCTATTCCATCGCCTCCCGATCGTTTGGGAAGAGAGAGAGAGAGAGTGTGTCTGCGTCTCTCTGGGCTTTGTGTACTCTCTCTCTCTCTCTCGCTTCTTTTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAAGCCAATGTTACCACAAAAAACGTGGGTTTTTTGGATCTGAAAATGGCCCAAAAAAGCTGAAAAATGACCCAAAAATCAGCATTTTCGATGGATTTTTGGCTCAAAATGGTCCAAAAATCATGTAAAATGGATTTTTGTCAAGAGTCTAAGGTGGTTTTAAGCCTAATTCAAGCCAAAAATTGGGTTCAAATTGACCCAAAAAGTTGGCATTTTTGGGCTTAAAATGGTCCAAAAATTAGGAAGGAAAAATGGATTTCAGACTATTTTTGGCCCTATTTTAAGCCATAATGTGG</canonical>
            <polymorphic>AAGCTTTAGTGTCAAGTGTTCATCATCACCAGTGTTAACACACACACACACACACACACACACACACACACACACACACACACACACCAGAACGATTCAAGAATCCAGGTTAAAAGAGAGAGAGAGAGAGAGAGAGAGAAAAGTGATGAACACATCTCTCTCGTTCGCTCGGTCCCCCCCCCCTGGTTGCCTCCTGTGTATATATAATATATAAAATTCGGGAAAAAAGGCGAGAGAACAGAGAGACGCAGACACAAAGTTTCAAGTGCTTTCGTTCGGCTGCTGTGTCTGCGTCTCTCACGACTTCCAGTACTCTCTCGCCACCTTGTCCTTCTCTTCTCCCTTCGCCCAATGTTGTTCGGCCTATTCCATCGCCTCCCGATCGTTTGGGAAGAGAGAGAGAGAGAGTGTGTCTGCGTCTCTCTGGGCTTTGTGTACTCTCTCTCTCTCTCTCGCTTCTTTTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAAYGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAAGCCAATGTTACCACAAAAAACGTGGGTTTTTTGGATCTGAAAATGGCCCAAAAAAGCTGAAAAATGACCCAAAAATCAGCATTTTCGATGGATTTTTGGCTCAAAATGGTCCAAAAATCATGTAAAATGGATTTTTGTCAAGAGTCTAAGGTGGTTTTAAGCCTAATTCAAGCCAAAAATTGGGTTCAAATTGACCCAAAAAGTTGGCATTTTTGGGCTTAAAATGGTCCAAAAATTAGGAAGGAAAAATGGATTTCAGACTATTTTTGGCCCTATTTTAAGCCATAATGTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTGTACTCTCTCTCTCTCTCTC</pcr_primer_p1>
		<pcr_primer_p2>TCTAAAATCAAAATTTCCATGAC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TTTGTGTACTCTCTCTCTCTCTCTCGCTTCTTTTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTGTGTACTCTCTCTCTCTCTCTCGCTTCTTTTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAAYGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27833</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>376472</contig_pos>
        <strand></strand>
        <context>tgacccgaaa[A/T]tcggtatttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAA</left_flank>
        <right_flank>TCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTTAACACACACACACACACACACACACACACACACACACACACACACACACACCAGAACGATTCAAGAATCCAGGTTAAAAGAGAGAGAGAGAGAGAGAGAGAGAAAAGTGATGAACACATCTCTCTCGTTCGCTCGGTCCCCCCCCCCTGGTTGCCTCCTGTGTATATATAATATATAAAATTCGGGAAAAAAGGCGAGAGAACAGAGAGACGCAGACACAAAGTTTCAAGTGCTTTCGTTCGGCTGCTGTGTCTGCGTCTCTCACGACTTCCAGTACTCTCTCGCCACCTTGTCCTTCTCTTCTCCCTTCGCCCAATGTTGTTCGGCCTATTCCATCGCCTCCCGATCGTTTGGGAAGAGAGAGAGAGAGAGTGTGTCTGCGTCTCTCTGGGCTTTGTGTACTCTCTCTCTCTCTCTCGCTTCTTTTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAAGCCAATGTTACCACAAAAAACGTGGGTTTTTTGGATCTGAAAATGGCCCAAAAAAGCTGAAAAATGACCCAAAAATCAGCATTTTCGATGGATTTTTGGCTCAAAATGGTCCAAAAATCATGTAAAATGGATTTTTGTCAAGAGTCTAAGGTGGTTTTAAGCCTAATTCAAGCCAAAAATTGGGTTCAAATTGACCCAAAAAGTTGGCATTTTTGGGCTTAAAATGGTCCAAAAATTAGGAAGGAAAAATGGATTTCAGACTATTTTTGGCCCTATTTTAAGCCATAATGTGGGCTTAAAATGGTCCGAAAATTGGTATTTTCG</canonical>
            <polymorphic>GTGTTAACACACACACACACACACACACACACACACACACACACACACACACACACCAGAACGATTCAAGAATCCAGGTTAAAAGAGAGAGAGAGAGAGAGAGAGAGAAAAGTGATGAACACATCTCTCTCGTTCGCTCGGTCCCCCCCCCCTGGTTGCCTCCTGTGTATATATAATATATAAAATTCGGGAAAAAAGGCGAGAGAACAGAGAGACGCAGACACAAAGTTTCAAGTGCTTTCGTTCGGCTGCTGTGTCTGCGTCTCTCACGACTTCCAGTACTCTCTCGCCACCTTGTCCTTCTCTTCTCCCTTCGCCCAATGTTGTTCGGCCTATTCCATCGCCTCCCGATCGTTTGGGAAGAGAGAGAGAGAGAGTGTGTCTGCGTCTCTCTGGGCTTTGTGTACTCTCTCTCTCTCTCTCGCTTCTTTTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAWTCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAAGCCAATGTTACCACAAAAAACGTGGGTTTTTTGGATCTGAAAATGGCCCAAAAAAGCTGAAAAATGACCCAAAAATCAGCATTTTCGATGGATTTTTGGCTCAAAATGGTCCAAAAATCATGTAAAATGGATTTTTGTCAAGAGTCTAAGGTGGTTTTAAGCCTAATTCAAGCCAAAAATTGGGTTCAAATTGACCCAAAAAGTTGGCATTTTTGGGCTTAAAATGGTCCAAAAATTAGGAAGGAAAAATGGATTTCAGACTATTTTTGGCCCTATTTTAAGCCATAATGTGGGCTTAAAATGGTCCGAAAATTGGTATTTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCCCTACATTTCGTTTATC</pcr_primer_p1>
		<pcr_primer_p2>TGGCTTAAAATCACTAGAAAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAAGCCA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAWTCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAAGCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27834</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>376577</contig_pos>
        <strand></strand>
        <context>cgtttttgat[A/G]gwtttttggc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGAT</left_flank>
        <right_flank>GATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGAC</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAAAGTGATGAACACATCTCTCTCGTTCGCTCGGTCCCCCCCCCCTGGTTGCCTCCTGTGTATATATAATATATAAAATTCGGGAAAAAAGGCGAGAGAACAGAGAGACGCAGACACAAAGTTTCAAGTGCTTTCGTTCGGCTGCTGTGTCTGCGTCTCTCACGACTTCCAGTACTCTCTCGCCACCTTGTCCTTCTCTTCTCCCTTCGCCCAATGTTGTTCGGCCTATTCCATCGCCTCCCGATCGTTTGGGAAGAGAGAGAGAGAGAGTGTGTCTGCGTCTCTCTGGGCTTTGTGTACTCTCTCTCTCTCTCTCGCTTCTTTTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAAGCCAATGTTACCACAAAAAACGTGGGTTTTTTGGATCTGAAAATGGCCCAAAAAAGCTGAAAAATGACCCAAAAATCAGCATTTTCGATGGATTTTTGGCTCAAAATGGTCCAAAAATCATGTAAAATGGATTTTTGTCAAGAGTCTAAGGTGGTTTTAAGCCTAATTCAAGCCAAAAATTGGGTTCAAATTGACCCAAAAAGTTGGCATTTTTGGGCTTAAAATGGTCCAAAAATTAGGAAGGAAAAATGGATTTCAGACTATTTTTGGCCCTATTTTAAGCCATAATGTGGGCTTAAAATGGTCCGAAAATTGGTATTTTCGATGGGGTTTTTGGTGTCGCTGAGCCAAAATTTTTGTCAATTTTAAGCTCATTTTGAGCCAATTTCATTTCCAGAAATGGTCCAAAAAAGACCGGAAAAACTGAAA</canonical>
            <polymorphic>AGAAAAGTGATGAACACATCTCTCTCGTTCGCTCGGTCCCCCCCCCCTGGTTGCCTCCTGTGTATATATAATATATAAAATTCGGGAAAAAAGGCGAGAGAACAGAGAGACGCAGACACAAAGTTTCAAGTGCTTTCGTTCGGCTGCTGTGTCTGCGTCTCTCACGACTTCCAGTACTCTCTCGCCACCTTGTCCTTCTCTTCTCCCTTCGCCCAATGTTGTTCGGCCTATTCCATCGCCTCCCGATCGTTTGGGAAGAGAGAGAGAGAGAGTGTGTCTGCGTCTCTCTGGGCTTTGTGTACTCTCTCTCTCTCTCTCGCTTCTTTTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATRGATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAAGCCAATGTTACCACAAAAAACGTGGGTTTTTTGGATCTGAAAATGGCCCAAAAAAGCTGAAAAATGACCCAAAAATCAGCATTTTCGATGGATTTTTGGCTCAAAATGGTCCAAAAATCATGTAAAATGGATTTTTGTCAAGAGTCTAAGGTGGTTTTAAGCCTAATTCAAGCCAAAAATTGGGTTCAAATTGACCCAAAAAGTTGGCATTTTTGGGCTTAAAATGGTCCAAAAATTAGGAAGGAAAAATGGATTTCAGACTATTTTTGGCCCTATTTTAAGCCATAATGTGGGCTTAAAATGGTCCGAAAATTGGTATTTTCGATGGGGTTTTTGGTGTCGCTGAGCCAAAATTTTTGTCAATTTTAAGCTCATTTTGAGCCAATTTCATTTCCAGAAATGGTCCAAAAAAGACCGGAAAAACTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCCCTACATTTCGTTTATC</pcr_primer_p1>
		<pcr_primer_p2>TGGCTTAAAATCACTAGAAAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAAGCCA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATRGATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAAGCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27835</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>376579</contig_pos>
        <strand></strand>
        <context>tttttgatrg[A/T]tttttggctc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAG</left_flank>
        <right_flank>TTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGACTG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGTGATGAACACATCTCTCTCGTTCGCTCGGTCCCCCCCCCCTGGTTGCCTCCTGTGTATATATAATATATAAAATTCGGGAAAAAAGGCGAGAGAACAGAGAGACGCAGACACAAAGTTTCAAGTGCTTTCGTTCGGCTGCTGTGTCTGCGTCTCTCACGACTTCCAGTACTCTCTCGCCACCTTGTCCTTCTCTTCTCCCTTCGCCCAATGTTGTTCGGCCTATTCCATCGCCTCCCGATCGTTTGGGAAGAGAGAGAGAGAGAGTGTGTCTGCGTCTCTCTGGGCTTTGTGTACTCTCTCTCTCTCTCTCGCTTCTTTTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAAGCCAATGTTACCACAAAAAACGTGGGTTTTTTGGATCTGAAAATGGCCCAAAAAAGCTGAAAAATGACCCAAAAATCAGCATTTTCGATGGATTTTTGGCTCAAAATGGTCCAAAAATCATGTAAAATGGATTTTTGTCAAGAGTCTAAGGTGGTTTTAAGCCTAATTCAAGCCAAAAATTGGGTTCAAATTGACCCAAAAAGTTGGCATTTTTGGGCTTAAAATGGTCCAAAAATTAGGAAGGAAAAATGGATTTCAGACTATTTTTGGCCCTATTTTAAGCCATAATGTGGGCTTAAAATGGTCCGAAAATTGGTATTTTCGATGGGGTTTTTGGTGTCGCTGAGCCAAAATTTTTGTCAATTTTAAGCTCATTTTGAGCCAATTTCATTTCCAGAAATGGTCCAAAAAAGACCGGAAAAACTGAAATT</canonical>
            <polymorphic>AAAAGTGATGAACACATCTCTCTCGTTCGCTCGGTCCCCCCCCCCTGGTTGCCTCCTGTGTATATATAATATATAAAATTCGGGAAAAAAGGCGAGAGAACAGAGAGACGCAGACACAAAGTTTCAAGTGCTTTCGTTCGGCTGCTGTGTCTGCGTCTCTCACGACTTCCAGTACTCTCTCGCCACCTTGTCCTTCTCTTCTCCCTTCGCCCAATGTTGTTCGGCCTATTCCATCGCCTCCCGATCGTTTGGGAAGAGAGAGAGAGAGAGTGTGTCTGCGTCTCTCTGGGCTTTGTGTACTCTCTCTCTCTCTCTCGCTTCTTTTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGWTTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAAGCCAATGTTACCACAAAAAACGTGGGTTTTTTGGATCTGAAAATGGCCCAAAAAAGCTGAAAAATGACCCAAAAATCAGCATTTTCGATGGATTTTTGGCTCAAAATGGTCCAAAAATCATGTAAAATGGATTTTTGTCAAGAGTCTAAGGTGGTTTTAAGCCTAATTCAAGCCAAAAATTGGGTTCAAATTGACCCAAAAAGTTGGCATTTTTGGGCTTAAAATGGTCCAAAAATTAGGAAGGAAAAATGGATTTCAGACTATTTTTGGCCCTATTTTAAGCCATAATGTGGGCTTAAAATGGTCCGAAAATTGGTATTTTCGATGGGGTTTTTGGTGTCGCTGAGCCAAAATTTTTGTCAATTTTAAGCTCATTTTGAGCCAATTTCATTTCCAGAAATGGTCCAAAAAAGACCGGAAAAACTGAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCCCTACATTTCGTTTATC</pcr_primer_p1>
		<pcr_primer_p2>TGGCTTAAAATCACTAGAAAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAAGCCA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGWTTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAAGCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27836</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>376596</contig_pos>
        <strand></strand>
        <context>gctcaaaatg[G/A]tycaaaaGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATG</left_flank>
        <right_flank>TCCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTCTCGTTCGCTCGGTCCCCCCCCCCTGGTTGCCTCCTGTGTATATATAATATATAAAATTCGGGAAAAAAGGCGAGAGAACAGAGAGACGCAGACACAAAGTTTCAAGTGCTTTCGTTCGGCTGCTGTGTCTGCGTCTCTCACGACTTCCAGTACTCTCTCGCCACCTTGTCCTTCTCTTCTCCCTTCGCCCAATGTTGTTCGGCCTATTCCATCGCCTCCCGATCGTTTGGGAAGAGAGAGAGAGAGAGTGTGTCTGCGTCTCTCTGGGCTTTGTGTACTCTCTCTCTCTCTCTCGCTTCTTTTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAAGCCAATGTTACCACAAAAAACGTGGGTTTTTTGGATCTGAAAATGGCCCAAAAAAGCTGAAAAATGACCCAAAAATCAGCATTTTCGATGGATTTTTGGCTCAAAATGGTCCAAAAATCATGTAAAATGGATTTTTGTCAAGAGTCTAAGGTGGTTTTAAGCCTAATTCAAGCCAAAAATTGGGTTCAAATTGACCCAAAAAGTTGGCATTTTTGGGCTTAAAATGGTCCAAAAATTAGGAAGGAAAAATGGATTTCAGACTATTTTTGGCCCTATTTTAAGCCATAATGTGGGCTTAAAATGGTCCGAAAATTGGTATTTTCGATGGGGTTTTTGGTGTCGCTGAGCCAAAATTTTTGTCAATTTTAAGCTCATTTTGAGCCAATTTCATTTCCAGAAATGGTCCAAAAAAGACCGGAAAAACTGAAATTTTCAGATTTTGACGATC</canonical>
            <polymorphic>CTCTCTCGTTCGCTCGGTCCCCCCCCCCTGGTTGCCTCCTGTGTATATATAATATATAAAATTCGGGAAAAAAGGCGAGAGAACAGAGAGACGCAGACACAAAGTTTCAAGTGCTTTCGTTCGGCTGCTGTGTCTGCGTCTCTCACGACTTCCAGTACTCTCTCGCCACCTTGTCCTTCTCTTCTCCCTTCGCCCAATGTTGTTCGGCCTATTCCATCGCCTCCCGATCGTTTGGGAAGAGAGAGAGAGAGAGTGTGTCTGCGTCTCTCTGGGCTTTGTGTACTCTCTCTCTCTCTCTCGCTTCTTTTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGRTCCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAAGCCAATGTTACCACAAAAAACGTGGGTTTTTTGGATCTGAAAATGGCCCAAAAAAGCTGAAAAATGACCCAAAAATCAGCATTTTCGATGGATTTTTGGCTCAAAATGGTCCAAAAATCATGTAAAATGGATTTTTGTCAAGAGTCTAAGGTGGTTTTAAGCCTAATTCAAGCCAAAAATTGGGTTCAAATTGACCCAAAAAGTTGGCATTTTTGGGCTTAAAATGGTCCAAAAATTAGGAAGGAAAAATGGATTTCAGACTATTTTTGGCCCTATTTTAAGCCATAATGTGGGCTTAAAATGGTCCGAAAATTGGTATTTTCGATGGGGTTTTTGGTGTCGCTGAGCCAAAATTTTTGTCAATTTTAAGCTCATTTTGAGCCAATTTCATTTCCAGAAATGGTCCAAAAAAGACCGGAAAAACTGAAATTTTCAGATTTTGACGATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>483 161 118 99 77 46 16</canonical_bands>
                <polymorphic_bands>644 118 99 77 46 16</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>483 118 99 98 63 46 43 34 16</canonical_bands>
                <polymorphic_bands>581 118 99 63 46 43 34 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCCCTACATTTCGTTTATC</pcr_primer_p1>
		<pcr_primer_p2>TGGCTTAAAATCACTAGAAAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAAGCCA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGRTCCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAAGCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27837</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>376598</contig_pos>
        <strand></strand>
        <context>tcaaaatgrt[C/T]caaaaGTCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGT</left_flank>
        <right_flank>CAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTCGTTCGCTCGGTCCCCCCCCCCTGGTTGCCTCCTGTGTATATATAATATATAAAATTCGGGAAAAAAGGCGAGAGAACAGAGAGACGCAGACACAAAGTTTCAAGTGCTTTCGTTCGGCTGCTGTGTCTGCGTCTCTCACGACTTCCAGTACTCTCTCGCCACCTTGTCCTTCTCTTCTCCCTTCGCCCAATGTTGTTCGGCCTATTCCATCGCCTCCCGATCGTTTGGGAAGAGAGAGAGAGAGAGTGTGTCTGCGTCTCTCTGGGCTTTGTGTACTCTCTCTCTCTCTCTCGCTTCTTTTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAAGCCAATGTTACCACAAAAAACGTGGGTTTTTTGGATCTGAAAATGGCCCAAAAAAGCTGAAAAATGACCCAAAAATCAGCATTTTCGATGGATTTTTGGCTCAAAATGGTCCAAAAATCATGTAAAATGGATTTTTGTCAAGAGTCTAAGGTGGTTTTAAGCCTAATTCAAGCCAAAAATTGGGTTCAAATTGACCCAAAAAGTTGGCATTTTTGGGCTTAAAATGGTCCAAAAATTAGGAAGGAAAAATGGATTTCAGACTATTTTTGGCCCTATTTTAAGCCATAATGTGGGCTTAAAATGGTCCGAAAATTGGTATTTTCGATGGGGTTTTTGGTGTCGCTGAGCCAAAATTTTTGTCAATTTTAAGCTCATTTTGAGCCAATTTCATTTCCAGAAATGGTCCAAAAAAGACCGGAAAAACTGAAATTTTCAGATTTTGACGATCTC</canonical>
            <polymorphic>CTCTCGTTCGCTCGGTCCCCCCCCCCTGGTTGCCTCCTGTGTATATATAATATATAAAATTCGGGAAAAAAGGCGAGAGAACAGAGAGACGCAGACACAAAGTTTCAAGTGCTTTCGTTCGGCTGCTGTGTCTGCGTCTCTCACGACTTCCAGTACTCTCTCGCCACCTTGTCCTTCTCTTCTCCCTTCGCCCAATGTTGTTCGGCCTATTCCATCGCCTCCCGATCGTTTGGGAAGAGAGAGAGAGAGAGTGTGTCTGCGTCTCTCTGGGCTTTGTGTACTCTCTCTCTCTCTCTCGCTTCTTTTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGTYCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAAGCCAATGTTACCACAAAAAACGTGGGTTTTTTGGATCTGAAAATGGCCCAAAAAAGCTGAAAAATGACCCAAAAATCAGCATTTTCGATGGATTTTTGGCTCAAAATGGTCCAAAAATCATGTAAAATGGATTTTTGTCAAGAGTCTAAGGTGGTTTTAAGCCTAATTCAAGCCAAAAATTGGGTTCAAATTGACCCAAAAAGTTGGCATTTTTGGGCTTAAAATGGTCCAAAAATTAGGAAGGAAAAATGGATTTCAGACTATTTTTGGCCCTATTTTAAGCCATAATGTGGGCTTAAAATGGTCCGAAAATTGGTATTTTCGATGGGGTTTTTGGTGTCGCTGAGCCAAAATTTTTGTCAATTTTAAGCTCATTTTGAGCCAATTTCATTTCCAGAAATGGTCCAAAAAAGACCGGAAAAACTGAAATTTTCAGATTTTGACGATCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>483 161 118 99 77 48 14</canonical_bands>
                <polymorphic_bands>644 118 99 77 48 14</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>483 118 99 98 63 48 43 34 14</canonical_bands>
                <polymorphic_bands>581 118 99 63 48 43 34 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCCCTACATTTCGTTTATC</pcr_primer_p1>
		<pcr_primer_p2>TGGCTTAAAATCACTAGAAAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAAGCCA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGTYCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAAGCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27838</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>376746</contig_pos>
        <strand></strand>
        <context>atggattttt[G/A]gctcaaaatg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CCAAAAAAGCTGAAAAATGACCCAAAAATCAGCATTTTCGATGGATTTTT</left_flank>
        <right_flank>GCTCAAAATGGTCCAAAAATCATGTAAAATGGATTTTTGTCAAGAGTCTA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAGTACTCTCTCGCCACCTTGTCCTTCTCTTCTCCCTTCGCCCAATGTTGTTCGGCCTATTCCATCGCCTCCCGATCGTTTGGGAAGAGAGAGAGAGAGAGTGTGTCTGCGTCTCTCTGGGCTTTGTGTACTCTCTCTCTCTCTCTCGCTTCTTTTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAAGCCAATGTTACCACAAAAAACGTGGGTTTTTTGGATCTGAAAATGGCCCAAAAAAGCTGAAAAATGACCCAAAAATCAGCATTTTCGATGGATTTTTGGCTCAAAATGGTCCAAAAATCATGTAAAATGGATTTTTGTCAAGAGTCTAAGGTGGTTTTAAGCCTAATTCAAGCCAAAAATTGGGTTCAAATTGACCCAAAAAGTTGGCATTTTTGGGCTTAAAATGGTCCAAAAATTAGGAAGGAAAAATGGATTTCAGACTATTTTTGGCCCTATTTTAAGCCATAATGTGGGCTTAAAATGGTCCGAAAATTGGTATTTTCGATGGGGTTTTTGGTGTCGCTGAGCCAAAATTTTTGTCAATTTTAAGCTCATTTTGAGCCAATTTCATTTCCAGAAATGGTCCAAAAAAGACCGGAAAAACTGAAATTTTCAGATTTTGACGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCAGAGAGATGGCGGATTCATTGAAAAGTGCGACAAGTGGCAGACAGAGATAAAGAGAATGAGAGAGAGAGAGAGAGAGAGAGAGAGGCAGAGAAAGAAAATCGTCGG</canonical>
            <polymorphic>TCCAGTACTCTCTCGCCACCTTGTCCTTCTCTTCTCCCTTCGCCCAATGTTGTTCGGCCTATTCCATCGCCTCCCGATCGTTTGGGAAGAGAGAGAGAGAGAGTGTGTCTGCGTCTCTCTGGGCTTTGTGTACTCTCTCTCTCTCTCTCGCTTCTTTTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAAGCCAATGTTACCACAAAAAACGTGGGTTTTTTGGATCTGAAAATGGCCCAAAAAAGCTGAAAAATGACCCAAAAATCAGCATTTTCGATGGATTTTTRGCTCAAAATGGTCCAAAAATCATGTAAAATGGATTTTTGTCAAGAGTCTAAGGTGGTTTTAAGCCTAATTCAAGCCAAAAATTGGGTTCAAATTGACCCAAAAAGTTGGCATTTTTGGGCTTAAAATGGTCCAAAAATTAGGAAGGAAAAATGGATTTCAGACTATTTTTGGCCCTATTTTAAGCCATAATGTGGGCTTAAAATGGTCCGAAAATTGGTATTTTCGATGGGGTTTTTGGTGTCGCTGAGCCAAAATTTTTGTCAATTTTAAGCTCATTTTGAGCCAATTTCATTTCCAGAAATGGTCCAAAAAAGACCGGAAAAACTGAAATTTTCAGATTTTGACGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCAGAGAGATGGCGGATTCATTGAAAAGTGCGACAAGTGGCAGACAGAGATAAAGAGAATGAGAGAGAGAGAGAGAGAGAGAGAGAGGCAGAGAAAGAAAATCGTCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>217 66 63 63 62 57 53 53 46 45 45 44 43 33 23 12 12 11 11 11 10 10 10</canonical_bands>
                <polymorphic_bands>217 105 66 63 63 57 53 53 46 45 45 44 33 23 12 12 11 11 11 10 10 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCCAATGTTACCACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAATCCATTTTTCCTTCCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>AGCCAATGTTACCACAAAAAACGTGGGTTTTTTGGATCTGAAAATGGCCCAAAAAAGCTGAAAAATGACCCAAAAATCAGCATTTTCGATGGATTTTTGGCTCAAAATGGTCCAAAAATCATGTAAAATGGATTTTTGTCAAGAGTCTAAGGTGGTTTTAAGCCTAATTCAAGCCAAAAATTGGGTTCAAATTGACCCAAAAAGTTGGCATTTTTGGGCTTAAAATGGTCCAAAAATTAGGAAGGAAAAATGGATTT</canonical_amplicon>
		<polymorphic_amplicon>AGCCAATGTTACCACAAAAAACGTGGGTTTTTTGGATCTGAAAATGGCCCAAAAAAGCTGAAAAATGACCCAAAAATCAGCATTTTCGATGGATTTTTRGCTCAAAATGGTCCAAAAATCATGTAAAATGGATTTTTGTCAAGAGTCTAAGGTGGTTTTAAGCCTAATTCAAGCCAAAAATTGGGTTCAAATTGACCCAAAAAGTTGGCATTTTTGGGCTTAAAATGGTCCAAAAATTAGGAAGGAAAAATGGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27839</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>376772</contig_pos>
        <strand></strand>
        <context>aaaatcatgt[A/G]aaatggattt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCAGCATTTTCGATGGATTTTTGGCTCAAAATGGTCCAAAAATCATGT</left_flank>
        <right_flank>AAATGGATTTTTGTCAAGAGTCTAAGGTGGTTTTAAGCCTAATTCAAGCC</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTCTTCTCCCTTCGCCCAATGTTGTTCGGCCTATTCCATCGCCTCCCGATCGTTTGGGAAGAGAGAGAGAGAGAGTGTGTCTGCGTCTCTCTGGGCTTTGTGTACTCTCTCTCTCTCTCTCGCTTCTTTTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAAGCCAATGTTACCACAAAAAACGTGGGTTTTTTGGATCTGAAAATGGCCCAAAAAAGCTGAAAAATGACCCAAAAATCAGCATTTTCGATGGATTTTTGGCTCAAAATGGTCCAAAAATCATGTAAAATGGATTTTTGTCAAGAGTCTAAGGTGGTTTTAAGCCTAATTCAAGCCAAAAATTGGGTTCAAATTGACCCAAAAAGTTGGCATTTTTGGGCTTAAAATGGTCCAAAAATTAGGAAGGAAAAATGGATTTCAGACTATTTTTGGCCCTATTTTAAGCCATAATGTGGGCTTAAAATGGTCCGAAAATTGGTATTTTCGATGGGGTTTTTGGTGTCGCTGAGCCAAAATTTTTGTCAATTTTAAGCTCATTTTGAGCCAATTTCATTTCCAGAAATGGTCCAAAAAAGACCGGAAAAACTGAAATTTTCAGATTTTGACGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCAGAGAGATGGCGGATTCATTGAAAAGTGCGACAAGTGGCAGACAGAGATAAAGAGAATGAGAGAGAGAGAGAGAGAGAGAGAGAGGCAGAGAAAGAAAATCGTCGGACTTGTTCTCTATCATCCATCCACAC</canonical>
            <polymorphic>TTCTCTTCTCCCTTCGCCCAATGTTGTTCGGCCTATTCCATCGCCTCCCGATCGTTTGGGAAGAGAGAGAGAGAGAGTGTGTCTGCGTCTCTCTGGGCTTTGTGTACTCTCTCTCTCTCTCTCGCTTCTTTTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAAGCCAATGTTACCACAAAAAACGTGGGTTTTTTGGATCTGAAAATGGCCCAAAAAAGCTGAAAAATGACCCAAAAATCAGCATTTTCGATGGATTTTTGGCTCAAAATGGTCCAAAAATCATGTRAAATGGATTTTTGTCAAGAGTCTAAGGTGGTTTTAAGCCTAATTCAAGCCAAAAATTGGGTTCAAATTGACCCAAAAAGTTGGCATTTTTGGGCTTAAAATGGTCCAAAAATTAGGAAGGAAAAATGGATTTCAGACTATTTTTGGCCCTATTTTAAGCCATAATGTGGGCTTAAAATGGTCCGAAAATTGGTATTTTCGATGGGGTTTTTGGTGTCGCTGAGCCAAAATTTTTGTCAATTTTAAGCTCATTTTGAGCCAATTTCATTTCCAGAAATGGTCCAAAAAAGACCGGAAAAACTGAAATTTTCAGATTTTGACGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCAGAGAGATGGCGGATTCATTGAAAAGTGCGACAAGTGGCAGACAGAGATAAAGAGAATGAGAGAGAGAGAGAGAGAGAGAGAGAGGCAGAGAAAGAAAATCGTCGGACTTGTTCTCTATCATCCATCCACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCCAATGTTACCACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAATCCATTTTTCCTTCCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>AGCCAATGTTACCACAAAAAACGTGGGTTTTTTGGATCTGAAAATGGCCCAAAAAAGCTGAAAAATGACCCAAAAATCAGCATTTTCGATGGATTTTTGGCTCAAAATGGTCCAAAAATCATGTAAAATGGATTTTTGTCAAGAGTCTAAGGTGGTTTTAAGCCTAATTCAAGCCAAAAATTGGGTTCAAATTGACCCAAAAAGTTGGCATTTTTGGGCTTAAAATGGTCCAAAAATTAGGAAGGAAAAATGGATTT</canonical_amplicon>
		<polymorphic_amplicon>AGCCAATGTTACCACAAAAAACGTGGGTTTTTTGGATCTGAAAATGGCCCAAAAAAGCTGAAAAATGACCCAAAAATCAGCATTTTCGATGGATTTTTGGCTCAAAATGGTCCAAAAATCATGTRAAATGGATTTTTGTCAAGAGTCTAAGGTGGTTTTAAGCCTAATTCAAGCCAAAAATTGGGTTCAAATTGACCCAAAAAGTTGGCATTTTTGGGCTTAAAATGGTCCAAAAATTAGGAAGGAAAAATGGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27840</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>376864</contig_pos>
        <strand>+</strand>
        <context>ggcatttttg[A/G]gcttaaaatg</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCAAGCCAAAAATTGGGTTCAAATTGACCCAAAAAGTTGGCATTTTTG</left_flank>
        <right_flank>GCTTAAAATGGTCCAAAAATTAGGAAGGAAAAATGGATTTCAGACTATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGGGCTTTGTGTACTCTCTCTCTCTCTCTCGCTTCTTTTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAAGCCAATGTTACCACAAAAAACGTGGGTTTTTTGGATCTGAAAATGGCCCAAAAAAGCTGAAAAATGACCCAAAAATCAGCATTTTCGATGGATTTTTGGCTCAAAATGGTCCAAAAATCATGTAAAATGGATTTTTGTCAAGAGTCTAAGGTGGTTTTAAGCCTAATTCAAGCCAAAAATTGGGTTCAAATTGACCCAAAAAGTTGGCATTTTTGGGCTTAAAATGGTCCAAAAATTAGGAAGGAAAAATGGATTTCAGACTATTTTTGGCCCTATTTTAAGCCATAATGTGGGCTTAAAATGGTCCGAAAATTGGTATTTTCGATGGGGTTTTTGGTGTCGCTGAGCCAAAATTTTTGTCAATTTTAAGCTCATTTTGAGCCAATTTCATTTCCAGAAATGGTCCAAAAAAGACCGGAAAAACTGAAATTTTCAGATTTTGACGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCAGAGAGATGGCGGATTCATTGAAAAGTGCGACAAGTGGCAGACAGAGATAAAGAGAATGAGAGAGAGAGAGAGAGAGAGAGAGAGGCAGAGAAAGAAAATCGTCGGACTTGTTCTCTATCATCCATCCACACAAGTGGATGGATGAGATCACCTCCGCTCGCTCTTCTCTTTCTTATCTTTGTATCGATTTTTGCAAAAATCTCGAACATCTGAAAAAGGCCGA</canonical>
            <polymorphic>CTGGGCTTTGTGTACTCTCTCTCTCTCTCTCGCTTCTTTTTTCCCTACATTTCGTTTATCCTTTGTGGCTAGAAAACGGCTGAAAATGGCCAGAAAATGACCCGAAAATCGGTATTTTTGAAGAATTTTTGAGCCAAAAATTGTGTTTCAAAAGTTCTGAAAATAGCTGAAAATAGCCGAAAAATGACCTCCAAAAATGTGGCGTTTTTGATAGATTTTTGGCTCAAAATGGTCCAAAAGTCATGGAAATTTTGATTTTAGACTGTGTTTTCTAGTGATTTTAAGCCAATGTTACCACAAAAAACGTGGGTTTTTTGGATCTGAAAATGGCCCAAAAAAGCTGAAAAATGACCCAAAAATCAGCATTTTCGATGGATTTTTGGCTCAAAATGGTCCAAAAATCATGTAAAATGGATTTTTGTCAAGAGTCTAAGGTGGTTTTAAGCCTAATTCAAGCCAAAAATTGGGTTCAAATTGACCCAAAAAGTTGGCATTTTTGRGCTTAAAATGGTCCAAAAATTAGGAAGGAAAAATGGATTTCAGACTATTTTTGGCCCTATTTTAAGCCATAATGTGGGCTTAAAATGGTCCGAAAATTGGTATTTTCGATGGGGTTTTTGGTGTCGCTGAGCCAAAATTTTTGTCAATTTTAAGCTCATTTTGAGCCAATTTCATTTCCAGAAATGGTCCAAAAAAGACCGGAAAAACTGAAATTTTCAGATTTTGACGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCAGAGAGATGGCGGATTCATTGAAAAGTGCGACAAGTGGCAGACAGAGATAAAGAGAATGAGAGAGAGAGAGAGAGAGAGAGAGAGGCAGAGAAAGAAAATCGTCGGACTTGTTCTCTATCATCCATCCACACAAGTGGATGGATGAGATCACCTCCGCTCGCTCTTCTCTTTCTTATCTTTGTATCGATTTTTGCAAAAATCTCGAACATCTGAAAAAGGCCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>331 63 63 62 53 53 46 45 45 44 43 33 23 12 12 11 11 11 10 10 10 5 4</canonical_bands>
                <polymorphic_bands>331 98 63 63 62 53 46 45 44 43 33 23 12 12 11 11 11 10 10 10 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCCAATGTTACCACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GGCCAAAAATAGTCTGAAATC</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>AGCCAATGTTACCACAAAAAACGTGGGTTTTTTGGATCTGAAAATGGCCCAAAAAAGCTGAAAAATGACCCAAAAATCAGCATTTTCGATGGATTTTTGGCTCAAAATGGTCCAAAAATCATGTAAAATGGATTTTTGTCAAGAGTCTAAGGTGGTTTTAAGCCTAATTCAAGCCAAAAATTGGGTTCAAATTGACCCAAAAAGTTGGCATTTTTGGGCTTAAAATGGTCCAAAAATTAGGAAGGAAAAATGGATTTCAGACTATTTTTGGCC</canonical_amplicon>
		<polymorphic_amplicon>AGCCAATGTTACCACAAAAAACGTGGGTTTTTTGGATCTGAAAATGGCCCAAAAAAGCTGAAAAATGACCCAAAAATCAGCATTTTCGATGGATTTTTGGCTCAAAATGGTCCAAAAATCATGTAAAATGGATTTTTGTCAAGAGTCTAAGGTGGTTTTAAGCCTAATTCAAGCCAAAAATTGGGTTCAAATTGACCCAAAAAGTTGGCATTTTTGRGCTTAAAATGGTCCAAAAATTAGGAAGGAAAAATGGATTTCAGACTATTTTTGGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27841</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>378075</contig_pos>
        <strand>+</strand>
        <context>AGATGGATTT[C/T]GAACTGTGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGAAATTTATGGGCGTTTTGAGCAGAAAATAGGCCAGAAAGATGGATTT</left_flank>
        <right_flank>GAACTGTGTTTGGGCAATTTTTTCTCTGAAAACTAGCTGAAAATGGCTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTCTAAACTACAGTAATTATGAACTACACTAATCCCCTGCGCCTTTAAAGGCGCATAGGGTCCGTTCATTTTTCTGCAATTTCAAATTCATTTTCACTCATTTTTTTGGCAATTTTTTAATCCAATTCCTCCAAATTCTTGGCTATTTTGAAGCCAAATTTTTGGTAGTTTCTCTGCGTCTCTGCGTCTCTCTCTCTCTCTCACTTTTCGAATTTTAATTGAGACAATGAGGGATACTTAAGCTTAGACGTCGCCGTTCGTCGCAGTCTCTATTTTCTGAAGAAGAGTAATTGACGTCGTCGTCTTCTTCTTCTTCTCCGGTTTCAATACTATACTCCTCTTCGTCTCTATCTTCTCCATTTTATGATGACACCAAAAGCCGGACGCATCGCATCGCATTTTGTGTGGGAATTTTTTTTCGAAATTTCGAGAAAAATCGACATTTTCCACGAAATTTATGGGCGTTTTGAGCAGAAAATAGGCCAGAAAGATGGATTTCGAACTGTGTTTGGGCAATTTTTTCTCTGAAAACTAGCTGAAAATGGCTTAGAAATAGCTACAAAATCACTGCAAAAGTCGATTTTTTTCACTGGAGTTTCCCTCATTTTTTGGTCATTTTTCGACCGGTTTTTAGCCATTTTTTAGTGATTTTTCAGCCAGTTTTTGACAATTTTTCGGTCATTTTTAGTGATTTTTCGACCGGTTTTTAGCCATGTTTTTGGTCTTTTTTCGACAATTTCATAACTAATTTTGAGCAATTTTTTGGCAATATTTTTTAGTCAGTTTTTAGCTGTTTTCTGGTCATTTAAAGGCAATTTTCATGTCATTTTTAGCTTTTTTTCCCACTTTTTTGGTTCAAAAAATCCTCAGAAATTGGCTCAAAAGTTATGAAAATTCAGTCTGAAAATCTGAAATTTCAACTTAAGAATGTTGGGATTTTCAGCTTGAAATTTGAAAAGTTTTTAGCCATTTTTTGGCCATTTTAAAGCCATTTTGTAT</canonical>
            <polymorphic>AGTCTAAACTACAGTAATTATGAACTACACTAATCCCCTGCGCCTTTAAAGGCGCATAGGGTCCGTTCATTTTTCTGCAATTTCAAATTCATTTTCACTCATTTTTTTGGCAATTTTTTAATCCAATTCCTCCAAATTCTTGGCTATTTTGAAGCCAAATTTTTGGTAGTTTCTCTGCGTCTCTGCGTCTCTCTCTCTCTCTCACTTTTCGAATTTTAATTGAGACAATGAGGGATACTTAAGCTTAGACGTCGCCGTTCGTCGCAGTCTCTATTTTCTGAAGAAGAGTAATTGACGTCGTCGTCTTCTTCTTCTTCTCCGGTTTCAATACTATACTCCTCTTCGTCTCTATCTTCTCCATTTTATGATGACACCAAAAGCCGGACGCATCGCATCGCATTTTGTGTGGGAATTTTTTTTCGAAATTTCGAGAAAAATCGACATTTTCCACGAAATTTATGGGCGTTTTGAGCAGAAAATAGGCCAGAAAGATGGATTTYGAACTGTGTTTGGGCAATTTTTTCTCTGAAAACTAGCTGAAAATGGCTTAGAAATAGCTACAAAATCACTGCAAAAGTCGATTTTTTTCACTGGAGTTTCCCTCATTTTTTGGTCATTTTTCGACCGGTTTTTAGCCATTTTTTAGTGATTTTTCAGCCAGTTTTTGACAATTTTTCGGTCATTTTTAGTGATTTTTCGACCGGTTTTTAGCCATGTTTTTGGTCTTTTTTCGACAATTTCATAACTAATTTTGAGCAATTTTTTGGCAATATTTTTTAGTCAGTTTTTAGCTGTTTTCTGGTCATTTAAAGGCAATTTTCATGTCATTTTTAGCTTTTTTTCCCACTTTTTTGGTTCAAAAAATCCTCAGAAATTGGCTCAAAAGTTATGAAAATTCAGTCTGAAAATCTGAAATTTCAACTTAAGAATGTTGGGATTTTCAGCTTGAAATTTGAAAAGTTTTTAGCCATTTTTTGGCCATTTTAAAGCCATTTTGTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 211 209 79</canonical_bands>
                <polymorphic_bands>580 211 209</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>268 211 210 79 76 61 43 34 10 8</canonical_bands>
                <polymorphic_bands>268 211 210 140 76 43 34 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTTCTCCGGTTTCAATACTA</pcr_primer_p1>
		<pcr_primer_p2>TAGCTATTTCTAAGCCATTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCTTCTCCGGTTTCAATACTATACTCCTCTTCGTCTCTATCTTCTCCATTTTATGATGACACCAAAAGCCGGACGCATCGCATCGCATTTTGTGTGGGAATTTTTTTTCGAAATTTCGAGAAAAATCGACATTTTCCACGAAATTTATGGGCGTTTTGAGCAGAAAATAGGCCAGAAAGATGGATTTCGAACTGTGTTTGGGCAATTTTTTCTCTGAAAACTAGCTGAAAATGGCTTAGAAATAGCTA</canonical_amplicon>
		<polymorphic_amplicon>TTCTTCTCCGGTTTCAATACTATACTCCTCTTCGTCTCTATCTTCTCCATTTTATGATGACACCAAAAGCCGGACGCATCGCATCGCATTTTGTGTGGGAATTTTTTTTCGAAATTTCGAGAAAAATCGACATTTTCCACGAAATTTATGGGCGTTTTGAGCAGAAAATAGGCCAGAAAGATGGATTTYGAACTGTGTTTGGGCAATTTTTTCTCTGAAAACTAGCTGAAAATGGCTTAGAAATAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27842</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>410720</contig_pos>
        <strand></strand>
        <context>CGATTTTggg[T/C]tttgtactcc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGCTTTTTAGGCACAAAATGACCCCAAAATCATGAGAATTCGATTTTGGG</left_flank>
        <right_flank>TTTGTACTCCTCGTGGACAAGTCGAGGCGCGAAATTTGAATTTTCATGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTAGTATTGTGTGGCTCTTGAGATTTTGAAACTTTCTTTGCTGTTTTTTTTTCTTTTTCTCTGCACTATCTCATCTTCCTATACTATTTCGCTCTCTCTCCGAAAACAAATAAAACGATTTTCGATGGGGTTTTTTTGGGGCGGGGAGGTGGTTAGAGGTGGGGATCAGGCCTCGGCAACAAAAATTCGGCAATTTCGGCAATCGGCAATTTGTTGCCGCACAGGCCTGGTGTGGATATGTGAGATTGCAAAACTTTTAAAAAACGAAGCTTTTCTCTTCAAAATGACAATTTCTAGTCCCGCTGTTATTCTGCGATCGTCCAGATCGCGACGGCTACATTCGCGACCGTACCAACAGGATAGAATGCGATCGTTCAGTACGGATAGGGTAGGAATTTGAAAAATCCTGAAAAATTGATAATTTTCGGCTTAAATAATGCGGAAATCGAGCTTTTTAGGCACAAAATGACCCCAAAATCATGAGAATTCGATTTTGGGTTTTGTACTCCTCGTGGACAAGTCGAGGCGCGAAATTTGAATTTTCATGAAAAAACAGCTCCGAATTTGAGCACAAGTCGTTGAAATTCGACTAATTCGGCGTTCTGATCAATTTTGAATTTTGTACTTCTCGTGGACAAGTCGAGGCGCCAAATGTGAACTTTTGAGTTGTAAATCAGCTTAAAACTCATTCTTTTCGGTGTAAAATAGCTAGAAATCAGTTTTTCATGATTTTTAATCTAAAAAAGCATCCAAAATCACTGAAATTCAATTTCAGATTTTGTACTCCTCGTGGACAAGTCGAGGCGCGAAATTTGAATTTTTGAGTTACAAATCAGCTCAGAGCTCAATTTTTCAGTGTAAAATCGCTAAAAATCAACTTTTTAAATGATTTTCAGCACTTAAATCTCCCATTTTCTTCAGCAAAGTACGACTCAATCGCTCTCCTCTCGAAGCGCCGTCGTCGCTGGGCTCTCACCGGCTCCATCGATGCGAACACCG</canonical>
            <polymorphic>TGTAGTATTGTGTGGCTCTTGAGATTTTGAAACTTTCTTTGCTGTTTTTTTTTCTTTTTCTCTGCACTATCTCATCTTCCTATACTATTTCGCTCTCTCTCCGAAAACAAATAAAACGATTTTCGATGGGGTTTTTTTGGGGCGGGGAGGTGGTTAGAGGTGGGGATCAGGCCTCGGCAACAAAAATTCGGCAATTTCGGCAATCGGCAATTTGTTGCCGCACAGGCCTGGTGTGGATATGTGAGATTGCAAAACTTTTAAAAAACGAAGCTTTTCTCTTCAAAATGACAATTTCTAGTCCCGCTGTTATTCTGCGATCGTCCAGATCGCGACGGCTACATTCGCGACCGTACCAACAGGATAGAATGCGATCGTTCAGTACGGATAGGGTAGGAATTTGAAAAATCCTGAAAAATTGATAATTTTCGGCTTAAATAATGCGGAAATCGAGCTTTTTAGGCACAAAATGACCCCAAAATCATGAGAATTCGATTTTGGGYTTTGTACTCCTCGTGGACAAGTCGAGGCGCGAAATTTGAATTTTCATGAAAAAACAGCTCCGAATTTGAGCACAAGTCGTTGAAATTCGACTAATTCGGCGTTCTGATCAATTTTGAATTTTGTACTTCTCGTGGACAAGTCGAGGCGCCAAATGTGAACTTTTGAGTTGTAAATCAGCTTAAAACTCATTCTTTTCGGTGTAAAATAGCTAGAAATCAGTTTTTCATGATTTTTAATCTAAAAAAGCATCCAAAATCACTGAAATTCAATTTCAGATTTTGTACTCCTCGTGGACAAGTCGAGGCGCGAAATTTGAATTTTTGAGTTACAAATCAGCTCAGAGCTCAATTTTTCAGTGTAAAATCGCTAAAAATCAACTTTTTAAATGATTTTCAGCACTTAAATCTCCCATTTTCTTCAGCAAAGTACGACTCAATCGCTCTCCTCTCGAAGCGCCGTCGTCGCTGGGCTCTCACCGGCTCCATCGATGCGAACACCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCGTACCAACAGGATAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TAGTCGAATTTCAACGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACCGTACCAACAGGATAGAATGCGATCGTTCAGTACGGATAGGGTAGGAATTTGAAAAATCCTGAAAAATTGATAATTTTCGGCTTAAATAATGCGGAAATCGAGCTTTTTAGGCACAAAATGACCCCAAAATCATGAGAATTCGATTTTGGGTTTTGTACTCCTCGTGGACAAGTCGAGGCGCGAAATTTGAATTTTCATGAAAAAACAGCTCCGAATTTGAGCACAAGTCGTTGAAATTCGACTA</canonical_amplicon>
		<polymorphic_amplicon>ACCGTACCAACAGGATAGAATGCGATCGTTCAGTACGGATAGGGTAGGAATTTGAAAAATCCTGAAAAATTGATAATTTTCGGCTTAAATAATGCGGAAATCGAGCTTTTTAGGCACAAAATGACCCCAAAATCATGAGAATTCGATTTTGGGYTTTGTACTCCTCGTGGACAAGTCGAGGCGCGAAATTTGAATTTTCATGAAAAAACAGCTCCGAATTTGAGCACAAGTCGTTGAAATTCGACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27843</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>410765</contig_pos>
        <strand></strand>
        <context>tttgaatttt[C/T]atgaaAAAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGGTTTTGTACTCCTCGTGGACAAGTCGAGGCGCGAAATTTGAATTTT</left_flank>
        <right_flank>ATGAAAAAACAGCTCCGAATTTGAGCACAAGTCGTTGAAATTCGACTAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTTTCTTTTTCTCTGCACTATCTCATCTTCCTATACTATTTCGCTCTCTCTCCGAAAACAAATAAAACGATTTTCGATGGGGTTTTTTTGGGGCGGGGAGGTGGTTAGAGGTGGGGATCAGGCCTCGGCAACAAAAATTCGGCAATTTCGGCAATCGGCAATTTGTTGCCGCACAGGCCTGGTGTGGATATGTGAGATTGCAAAACTTTTAAAAAACGAAGCTTTTCTCTTCAAAATGACAATTTCTAGTCCCGCTGTTATTCTGCGATCGTCCAGATCGCGACGGCTACATTCGCGACCGTACCAACAGGATAGAATGCGATCGTTCAGTACGGATAGGGTAGGAATTTGAAAAATCCTGAAAAATTGATAATTTTCGGCTTAAATAATGCGGAAATCGAGCTTTTTAGGCACAAAATGACCCCAAAATCATGAGAATTCGATTTTGGGTTTTGTACTCCTCGTGGACAAGTCGAGGCGCGAAATTTGAATTTTCATGAAAAAACAGCTCCGAATTTGAGCACAAGTCGTTGAAATTCGACTAATTCGGCGTTCTGATCAATTTTGAATTTTGTACTTCTCGTGGACAAGTCGAGGCGCCAAATGTGAACTTTTGAGTTGTAAATCAGCTTAAAACTCATTCTTTTCGGTGTAAAATAGCTAGAAATCAGTTTTTCATGATTTTTAATCTAAAAAAGCATCCAAAATCACTGAAATTCAATTTCAGATTTTGTACTCCTCGTGGACAAGTCGAGGCGCGAAATTTGAATTTTTGAGTTACAAATCAGCTCAGAGCTCAATTTTTCAGTGTAAAATCGCTAAAAATCAACTTTTTAAATGATTTTCAGCACTTAAATCTCCCATTTTCTTCAGCAAAGTACGACTCAATCGCTCTCCTCTCGAAGCGCCGTCGTCGCTGGGCTCTCACCGGCTCCATCGATGCGAACACCGATTGGTCCGCTATCGAACACCACTGCCACGTCGACATCGTCACGA</canonical>
            <polymorphic>TTTTTTTTCTTTTTCTCTGCACTATCTCATCTTCCTATACTATTTCGCTCTCTCTCCGAAAACAAATAAAACGATTTTCGATGGGGTTTTTTTGGGGCGGGGAGGTGGTTAGAGGTGGGGATCAGGCCTCGGCAACAAAAATTCGGCAATTTCGGCAATCGGCAATTTGTTGCCGCACAGGCCTGGTGTGGATATGTGAGATTGCAAAACTTTTAAAAAACGAAGCTTTTCTCTTCAAAATGACAATTTCTAGTCCCGCTGTTATTCTGCGATCGTCCAGATCGCGACGGCTACATTCGCGACCGTACCAACAGGATAGAATGCGATCGTTCAGTACGGATAGGGTAGGAATTTGAAAAATCCTGAAAAATTGATAATTTTCGGCTTAAATAATGCGGAAATCGAGCTTTTTAGGCACAAAATGACCCCAAAATCATGAGAATTCGATTTTGGGTTTTGTACTCCTCGTGGACAAGTCGAGGCGCGAAATTTGAATTTTYATGAAAAAACAGCTCCGAATTTGAGCACAAGTCGTTGAAATTCGACTAATTCGGCGTTCTGATCAATTTTGAATTTTGTACTTCTCGTGGACAAGTCGAGGCGCCAAATGTGAACTTTTGAGTTGTAAATCAGCTTAAAACTCATTCTTTTCGGTGTAAAATAGCTAGAAATCAGTTTTTCATGATTTTTAATCTAAAAAAGCATCCAAAATCACTGAAATTCAATTTCAGATTTTGTACTCCTCGTGGACAAGTCGAGGCGCGAAATTTGAATTTTTGAGTTACAAATCAGCTCAGAGCTCAATTTTTCAGTGTAAAATCGCTAAAAATCAACTTTTTAAATGATTTTCAGCACTTAAATCTCCCATTTTCTTCAGCAAAGTACGACTCAATCGCTCTCCTCTCGAAGCGCCGTCGTCGCTGGGCTCTCACCGGCTCCATCGATGCGAACACCGATTGGTCCGCTATCGAACACCACTGCCACGTCGACATCGTCACGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>434 320 181 65</canonical_bands>
                <polymorphic_bands>434 320 246</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>435 319 181 65</canonical_bands>
                <polymorphic_bands>435 319 246</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>277 222 181 93 73 65 64 15 6 4</canonical_bands>
                <polymorphic_bands>277 246 222 93 73 64 15 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTAGGCACAAAATGACC</pcr_primer_p1>
		<pcr_primer_p2>TACACCGAAAAGAATGAGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTTTAGGCACAAAATGACCCCAAAATCATGAGAATTCGATTTTGGGTTTTGTACTCCTCGTGGACAAGTCGAGGCGCGAAATTTGAATTTTCATGAAAAAACAGCTCCGAATTTGAGCACAAGTCGTTGAAATTCGACTAATTCGGCGTTCTGATCAATTTTGAATTTTGTACTTCTCGTGGACAAGTCGAGGCGCCAAATGTGAACTTTTGAGTTGTAAATCAGCTTAAAACTCATTCTTTTCGGTGTA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTAGGCACAAAATGACCCCAAAATCATGAGAATTCGATTTTGGGTTTTGTACTCCTCGTGGACAAGTCGAGGCGCGAAATTTGAATTTTYATGAAAAAACAGCTCCGAATTTGAGCACAAGTCGTTGAAATTCGACTAATTCGGCGTTCTGATCAATTTTGAATTTTGTACTTCTCGTGGACAAGTCGAGGCGCCAAATGTGAACTTTTGAGTTGTAAATCAGCTTAAAACTCATTCTTTTCGGTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27844</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>411012</contig_pos>
        <strand></strand>
        <context>gtactcctcg[T/C]ggacaagtcg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAAAGCATCCAAAATCACTGAAATTCAATTTCAGATTTTGTACTCCTCG</left_flank>
        <right_flank>GGACAAGTCGAGGCGCGAAATTTGAATTTTTGAGTTACAAATCAGCTCAG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTAGTCCCGCTGTTATTCTGCGATCGTCCAGATCGCGACGGCTACATTCGCGACCGTACCAACAGGATAGAATGCGATCGTTCAGTACGGATAGGGTAGGAATTTGAAAAATCCTGAAAAATTGATAATTTTCGGCTTAAATAATGCGGAAATCGAGCTTTTTAGGCACAAAATGACCCCAAAATCATGAGAATTCGATTTTGGGTTTTGTACTCCTCGTGGACAAGTCGAGGCGCGAAATTTGAATTTTCATGAAAAAACAGCTCCGAATTTGAGCACAAGTCGTTGAAATTCGACTAATTCGGCGTTCTGATCAATTTTGAATTTTGTACTTCTCGTGGACAAGTCGAGGCGCCAAATGTGAACTTTTGAGTTGTAAATCAGCTTAAAACTCATTCTTTTCGGTGTAAAATAGCTAGAAATCAGTTTTTCATGATTTTTAATCTAAAAAAGCATCCAAAATCACTGAAATTCAATTTCAGATTTTGTACTCCTCGTGGACAAGTCGAGGCGCGAAATTTGAATTTTTGAGTTACAAATCAGCTCAGAGCTCAATTTTTCAGTGTAAAATCGCTAAAAATCAACTTTTTAAATGATTTTCAGCACTTAAATCTCCCATTTTCTTCAGCAAAGTACGACTCAATCGCTCTCCTCTCGAAGCGCCGTCGTCGCTGGGCTCTCACCGGCTCCATCGATGCGAACACCGATTGGTCCGCTATCGAACACCACTGCCACGTCGACATCGTCACGATACATGCCATCGTCGTCGCTCTCATCGAATGGATCGTCGGCGAATAATCAGCCGATTTATGGATTGCAGGTTAGGTTGAAAATTAAGTAACACTGGGGGGGGGGGGGGAAATGTTCAAAGTGTAGGCGGCCTAGAAAACGAATAGGTGGCCTAGGTCTTGCAAATAAAAGAAGAACGAGGTTTCTAGGCCATCTAGAAGCCGAGACACAGTCGTTCGAAGTTTAGGAGGCTAGAGACGCCAGACGAC</canonical>
            <polymorphic>TTCTAGTCCCGCTGTTATTCTGCGATCGTCCAGATCGCGACGGCTACATTCGCGACCGTACCAACAGGATAGAATGCGATCGTTCAGTACGGATAGGGTAGGAATTTGAAAAATCCTGAAAAATTGATAATTTTCGGCTTAAATAATGCGGAAATCGAGCTTTTTAGGCACAAAATGACCCCAAAATCATGAGAATTCGATTTTGGGTTTTGTACTCCTCGYGGACAAGTCGAGGCGCGAAATTTGAATTTTCATGAAAAAACAGCTCCGAATTTGAGCACAAGTCGTTGAAATTCGACTAATTCGGCGTTCTGATCAATTTTGAATTTTGTACTTCTCGTGGACAAGTCGAGGCGCCAAATGTGAACTTTTGAGTTGTAAATCAGCTTAAAACTCATTCTTTTCGGTGTAAAATAGCTAGAAATCAGTTTTTCATGATTTTTAATCTAAAAAAGCATCCAAAATCACTGAAATTCAATTTCAGATTTTGTACTCCTCGTGGACAAGTCGAGGCGCGAAATTTGAATTTTTGAGTTACAAATCAGCTCAGAGCTCAATTTTTCAGTGTAAAATCGCTAAAAATCAACTTTTTAAATGATTTTCAGCACTTAAATCTCCCATTTTCTTCAGCAAAGTACGACTCAATCGCTCTCCTCTCGAAGCGCCGTCGTCGCTGGGCTCTCACCGGCTCCATCGATGCGAACACCGATTGGTCCGCTATCGAACACCACTGCCACGTCGACATCGTCACGATACATGCCATCGTCGTCGCTCTCATCGAATGGATCGTCGGCGAATAATCAGCCGATTTATGGATTGCAGGTTAGGTTGAAAATTAAGTAACACTGGGGGGGGGGGGGGAAATGTTCAAAGTGTAGGCGGCCTAGAAAACGAATAGGTGGCCTAGGTCTTGCAAATAAAAGAAGAACGAGGTTTCTAGGCCATCTAGAAGCCGAGACACAGTCGTTCGAAGTTTAGGAGGCTAGAGACGCCAGACGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>170 95 77 66 62 59 58 57 53 44 40 40 34 30 26 23 22 21 14 6 3</canonical_bands>
                <polymorphic_bands>170 110 95 77 66 62 59 58 44 40 40 34 30 26 23 22 21 14 6 3</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>260 239 223 136 119 23</canonical_bands>
                <polymorphic_bands>342 260 239 136 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCATTCTTTTCGGTGTAAAATA</pcr_primer_p1>
		<pcr_primer_p2>GAGTCGTACTTTGCTGAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCATTCTTTTCGGTGTAAAATAGCTAGAAATCAGTTTTTCATGATTTTTAATCTAAAAAAGCATCCAAAATCACTGAAATTCAATTTCAGATTTTGTACTCCTCGTGGACAAGTCGAGGCGCGAAATTTGAATTTTTGAGTTACAAATCAGCTCAGAGCTCAATTTTTCAGTGTAAAATCGCTAAAAATCAACTTTTTAAATGATTTTCAGCACTTAAATCTCCCATTTTCTTCAGCAAAGTACGACTC</canonical_amplicon>
		<polymorphic_amplicon>CTCATTCTTTTCGGTGTAAAATAGCTAGAAATCAGTTTTTCATGATTTTTAATCTAAAAAAGCATCCAAAATCACTGAAATTCAATTTCAGATTTTGTACTCCTCGTGGACAAGTCGAGGCGCGAAATTTGAATTTTTGAGTTACAAATCAGCTCAGAGCTCAATTTTTCAGTGTAAAATCGCTAAAAATCAACTTTTTAAATGATTTTCAGCACTTAAATCTCCCATTTTCTTCAGCAAAGTACGACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27845</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>411024</contig_pos>
        <strand>+</strand>
        <context>gacaagtcga[A/T]gcgcgaaatt</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATCACTGAAATTCAATTTCAGATTTTGTACTCCTCGTGGACAAGTCGA</left_flank>
        <right_flank>GCGCGAAATTTGAATTTTTGAGTTACAAATCAGCTCAGAGCTCAATTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTATTCTGCGATCGTCCAGATCGCGACGGCTACATTCGCGACCGTACCAACAGGATAGAATGCGATCGTTCAGTACGGATAGGGTAGGAATTTGAAAAATCCTGAAAAATTGATAATTTTCGGCTTAAATAATGCGGAAATCGAGCTTTTTAGGCACAAAATGACCCCAAAATCATGAGAATTCGATTTTGGGTTTTGTACTCCTCGTGGACAAGTCGAGGCGCGAAATTTGAATTTTCATGAAAAAACAGCTCCGAATTTGAGCACAAGTCGTTGAAATTCGACTAATTCGGCGTTCTGATCAATTTTGAATTTTGTACTTCTCGTGGACAAGTCGAGGCGCCAAATGTGAACTTTTGAGTTGTAAATCAGCTTAAAACTCATTCTTTTCGGTGTAAAATAGCTAGAAATCAGTTTTTCATGATTTTTAATCTAAAAAAGCATCCAAAATCACTGAAATTCAATTTCAGATTTTGTACTCCTCGTGGACAAGTCGAGGCGCGAAATTTGAATTTTTGAGTTACAAATCAGCTCAGAGCTCAATTTTTCAGTGTAAAATCGCTAAAAATCAACTTTTTAAATGATTTTCAGCACTTAAATCTCCCATTTTCTTCAGCAAAGTACGACTCAATCGCTCTCCTCTCGAAGCGCCGTCGTCGCTGGGCTCTCACCGGCTCCATCGATGCGAACACCGATTGGTCCGCTATCGAACACCACTGCCACGTCGACATCGTCACGATACATGCCATCGTCGTCGCTCTCATCGAATGGATCGTCGGCGAATAATCAGCCGATTTATGGATTGCAGGTTAGGTTGAAAATTAAGTAACACTGGGGGGGGGGGGGGAAATGTTCAAAGTGTAGGCGGCCTAGAAAACGAATAGGTGGCCTAGGTCTTGCAAATAAAAGAAGAACGAGGTTTCTAGGCCATCTAGAAGCCGAGACACAGTCGTTCGAAGTTTAGGAGGCTAGAGACGCCAGACGACGAGACACTCTAA</canonical>
            <polymorphic>TGTTATTCTGCGATCGTCCAGATCGCGACGGCTACATTCGCGACCGTACCAACAGGATAGAATGCGATCGTTCAGTACGGATAGGGTAGGAATTTGAAAAATCCTGAAAAATTGATAATTTTCGGCTTAAATAATGCGGAAATCGAGCTTTTTAGGCACAAAATGACCCCAAAATCATGAGAATTCGATTTTGGGTTTTGTACTCCTCGTGGACAAGTCGAWGCGCGAAATTTGAATTTTCATGAAAAAACAGCTCCGAATTTGAGCACAAGTCGTTGAAATTCGACTAATTCGGCGTTCTGATCAATTTTGAATTTTGTACTTCTCGTGGACAAGTCGAGGCGCCAAATGTGAACTTTTGAGTTGTAAATCAGCTTAAAACTCATTCTTTTCGGTGTAAAATAGCTAGAAATCAGTTTTTCATGATTTTTAATCTAAAAAAGCATCCAAAATCACTGAAATTCAATTTCAGATTTTGTACTCCTCGTGGACAAGTCGAGGCGCGAAATTTGAATTTTTGAGTTACAAATCAGCTCAGAGCTCAATTTTTCAGTGTAAAATCGCTAAAAATCAACTTTTTAAATGATTTTCAGCACTTAAATCTCCCATTTTCTTCAGCAAAGTACGACTCAATCGCTCTCCTCTCGAAGCGCCGTCGTCGCTGGGCTCTCACCGGCTCCATCGATGCGAACACCGATTGGTCCGCTATCGAACACCACTGCCACGTCGACATCGTCACGATACATGCCATCGTCGTCGCTCTCATCGAATGGATCGTCGGCGAATAATCAGCCGATTTATGGATTGCAGGTTAGGTTGAAAATTAAGTAACACTGGGGGGGGGGGGGGAAATGTTCAAAGTGTAGGCGGCCTAGAAAACGAATAGGTGGCCTAGGTCTTGCAAATAAAAGAAGAACGAGGTTTCTAGGCCATCTAGAAGCCGAGACACAGTCGTTCGAAGTTTAGGAGGCTAGAGACGCCAGACGACGAGACACTCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCATTCTTTTCGGTGTAAAATA</pcr_primer_p1>
		<pcr_primer_p2>GAGTCGTACTTTGCTGAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCATTCTTTTCGGTGTAAAATAGCTAGAAATCAGTTTTTCATGATTTTTAATCTAAAAAAGCATCCAAAATCACTGAAATTCAATTTCAGATTTTGTACTCCTCGTGGACAAGTCGAGGCGCGAAATTTGAATTTTTGAGTTACAAATCAGCTCAGAGCTCAATTTTTCAGTGTAAAATCGCTAAAAATCAACTTTTTAAATGATTTTCAGCACTTAAATCTCCCATTTTCTTCAGCAAAGTACGACTC</canonical_amplicon>
		<polymorphic_amplicon>CTCATTCTTTTCGGTGTAAAATAGCTAGAAATCAGTTTTTCATGATTTTTAATCTAAAAAAGCATCCAAAATCACTGAAATTCAATTTCAGATTTTGTACTCCTCGTGGACAAGTCGAGGCGCGAAATTTGAATTTTTGAGTTACAAATCAGCTCAGAGCTCAATTTTTCAGTGTAAAATCGCTAAAAATCAACTTTTTAAATGATTTTCAGCACTTAAATCTCCCATTTTCTTCAGCAAAGTACGACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27846</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>413811</contig_pos>
        <strand>+</strand>
        <context>GCCAAAAAAT[G/T]TGAATTTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAACCAATTTTTGCATATTATTTGTTCCCCCATTTTTCCCGCCAAAAAAT</left_flank>
        <right_flank>TGAATTTTTGGCCCCGCCCCCCCGCCCCCACTTTTATAATCAATTTTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTTCCAAAAAATAGGTCATATTTGGATTTCTAGGTCATGACCTAGTTTTTTGGATTTCTAGGTCATGGCCTAATTTTCAGATTTTTCGAAAATTTCAAAGATTTGCAATTTTTCTTCCAGACCACACAAAATCTTCGAATGGAAAATCAACGGTTGAAGGAGGAGAACGGAGCGCTGGTCAGGGTCATTTCGAAGATGACCATCTAGAACATTCTATGGAAAATTTATTTTTTATTGTTTTTTCTTTTTCTTCTCTAAAATTTTAAATTATTGATTTTTCCCTTTTTCCGCTCCTCCTCCTCTTTTCGTTTCGGGACCCATCATCATCATCATTTTTTTTTGTAAAAAATGCAAATACGCTCTATTGAGAATTTTCTCTATTCTATACTATTAGTTTCTATTTTTTTTCAAAAATTTCCTCGCTCACCGGGATCATACTGTACACGAACCAATTTTTGCATATTATTTGTTCCCCCATTTTTCCCGCCAAAAAATGTGAATTTTTGGCCCCGCCCCCCCGCCCCCACTTTTATAATCAATTTTTCTTTCGTTTTTTCGTCGTTTGCCGGATATGTGCAATAATTATTTTTGTCTCCCATTCTTCTGATGAGCAATCTATGCCCCGCCCCCCTCTCCCTATCATCATTTTTTCTCTGTCTGAAAATGAAGGAATTTTCTCAGATTTTTGGTTTTTTGAAAATTTTGAAAATGTAAAAAATTTTAAAAATTGGAAAAAAATTTTTTTTGGAAATTTTGATTTTTAGCATTTTTTGAAGAAAATAAGTTTAAATTGGCAAAATAGCGGACCAAAAGTTAAAAGGGCGTTTTTCGGATTACTGTAGATCACTGTAGCGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTAAATTTTCGCGGCGT</canonical>
            <polymorphic>TTTTTTTCCAAAAAATAGGTCATATTTGGATTTCTAGGTCATGACCTAGTTTTTTGGATTTCTAGGTCATGGCCTAATTTTCAGATTTTTCGAAAATTTCAAAGATTTGCAATTTTTCTTCCAGACCACACAAAATCTTCGAATGGAAAATCAACGGTTGAAGGAGGAGAACGGAGCGCTGGTCAGGGTCATTTCGAAGATGACCATCTAGAACATTCTATGGAAAATTTATTTTTTATTGTTTTTTCTTTTTCTTCTCTAAAATTTTAAATTATTGATTTTTCCCTTTTTCCGCTCCTCCTCCTCTTTTCGTTTCGGGACCCATCATCATCATCATTTTTTTTTGTAAAAAATGCAAATACGCTCTATTGAGAATTTTCTCTATTCTATACTATTAGTTTCTATTTTTTTTCAAAAATTTCCTCGCTCACCGGGATCATACTGTACACGAACCAATTTTTGCATATTATTTGTTCCCCCATTTTTCCCGCCAAAAAATKTGAATTTTTGGCCCCGCCCCCCCGCCCCCACTTTTATAATCAATTTTTCTTTCGTTTTTTCGTCGTTTGCCGGATATGTGCAATAATTATTTTTGTCTCCCATTCTTCTGATGAGCAATCTATGCCCCGCCCCCCTCTCCCTATCATCATTTTTTCTCTGTCTGAAAATGAAGGAATTTTCTCAGATTTTTGGTTTTTTGAAAATTTTGAAAATGTAAAAAATTTTAAAAATTGGAAAAAAATTTTTTTTGGAAATTTTGATTTTTAGCATTTTTTGAAGAAAATAAGTTTAAATTGGCAAAATAGCGGACCAAAAGTTAAAAGGGCGTTTTTCGGATTACTGTAGATCACTGTAGCGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTAAATTTTCGCGGCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>300 270 150 128 54 50 28 18 2</canonical_bands>
                <polymorphic_bands>300 270 150 128 82 50 18 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATCATACTGTACACGAACC</pcr_primer_p1>
		<pcr_primer_p2>AGAAAATTCCTTCATTTTCAGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGATCATACTGTACACGAACCAATTTTTGCATATTATTTGTTCCCCCATTTTTCCCGCCAAAAAATGTGAATTTTTGGCCCCGCCCCCCCGCCCCCACTTTTATAATCAATTTTTCTTTCGTTTTTTCGTCGTTTGCCGGATATGTGCAATAATTATTTTTGTCTCCCATTCTTCTGATGAGCAATCTATGCCCCGCCCCCCTCTCCCTATCATCATTTTTTCTCTGTCTGAAAATGAAGGAATTTTCT</canonical_amplicon>
		<polymorphic_amplicon>GGATCATACTGTACACGAACCAATTTTTGCATATTATTTGTTCCCCCATTTTTCCCGCCAAAAAATKTGAATTTTTGGCCCCGCCCCCCCGCCCCCACTTTTATAATCAATTTTTCTTTCGTTTTTTCGTCGTTTGCCGGATATGTGCAATAATTATTTTTGTCTCCCATTCTTCTGATGAGCAATCTATGCCCCGCCCCCCTCTCCCTATCATCATTTTTTCTCTGTCTGAAAATGAAGGAATTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27847</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>413823</contig_pos>
        <strand>+</strand>
        <context>GAATTTTTGG[G/T]CCCGCCCCCC</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCATATTATTTGTTCCCCCATTTTTCCCGCCAAAAAATGTGAATTTTTGG</left_flank>
        <right_flank>CCCGCCCCCCCGCCCCCACTTTTATAATCAATTTTTCTTTCGTTTTTTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATAGGTCATATTTGGATTTCTAGGTCATGACCTAGTTTTTTGGATTTCTAGGTCATGGCCTAATTTTCAGATTTTTCGAAAATTTCAAAGATTTGCAATTTTTCTTCCAGACCACACAAAATCTTCGAATGGAAAATCAACGGTTGAAGGAGGAGAACGGAGCGCTGGTCAGGGTCATTTCGAAGATGACCATCTAGAACATTCTATGGAAAATTTATTTTTTATTGTTTTTTCTTTTTCTTCTCTAAAATTTTAAATTATTGATTTTTCCCTTTTTCCGCTCCTCCTCCTCTTTTCGTTTCGGGACCCATCATCATCATCATTTTTTTTTGTAAAAAATGCAAATACGCTCTATTGAGAATTTTCTCTATTCTATACTATTAGTTTCTATTTTTTTTCAAAAATTTCCTCGCTCACCGGGATCATACTGTACACGAACCAATTTTTGCATATTATTTGTTCCCCCATTTTTCCCGCCAAAAAATGTGAATTTTTGGCCCCGCCCCCCCGCCCCCACTTTTATAATCAATTTTTCTTTCGTTTTTTCGTCGTTTGCCGGATATGTGCAATAATTATTTTTGTCTCCCATTCTTCTGATGAGCAATCTATGCCCCGCCCCCCTCTCCCTATCATCATTTTTTCTCTGTCTGAAAATGAAGGAATTTTCTCAGATTTTTGGTTTTTTGAAAATTTTGAAAATGTAAAAAATTTTAAAAATTGGAAAAAAATTTTTTTTGGAAATTTTGATTTTTAGCATTTTTTGAAGAAAATAAGTTTAAATTGGCAAAATAGCGGACCAAAAGTTAAAAGGGCGTTTTTCGGATTACTGTAGATCACTGTAGCGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTAAATTTTCGCGGCGTTTCAGGGTTACT</canonical>
            <polymorphic>AAATAGGTCATATTTGGATTTCTAGGTCATGACCTAGTTTTTTGGATTTCTAGGTCATGGCCTAATTTTCAGATTTTTCGAAAATTTCAAAGATTTGCAATTTTTCTTCCAGACCACACAAAATCTTCGAATGGAAAATCAACGGTTGAAGGAGGAGAACGGAGCGCTGGTCAGGGTCATTTCGAAGATGACCATCTAGAACATTCTATGGAAAATTTATTTTTTATTGTTTTTTCTTTTTCTTCTCTAAAATTTTAAATTATTGATTTTTCCCTTTTTCCGCTCCTCCTCCTCTTTTCGTTTCGGGACCCATCATCATCATCATTTTTTTTTGTAAAAAATGCAAATACGCTCTATTGAGAATTTTCTCTATTCTATACTATTAGTTTCTATTTTTTTTCAAAAATTTCCTCGCTCACCGGGATCATACTGTACACGAACCAATTTTTGCATATTATTTGTTCCCCCATTTTTCCCGCCAAAAAATGTGAATTTTTGGKCCCGCCCCCCCGCCCCCACTTTTATAATCAATTTTTCTTTCGTTTTTTCGTCGTTTGCCGGATATGTGCAATAATTATTTTTGTCTCCCATTCTTCTGATGAGCAATCTATGCCCCGCCCCCCTCTCCCTATCATCATTTTTTCTCTGTCTGAAAATGAAGGAATTTTCTCAGATTTTTGGTTTTTTGAAAATTTTGAAAATGTAAAAAATTTTAAAAATTGGAAAAAAATTTTTTTTGGAAATTTTGATTTTTAGCATTTTTTGAAGAAAATAAGTTTAAATTGGCAAAATAGCGGACCAAAAGTTAAAAGGGCGTTTTTCGGATTACTGTAGATCACTGTAGCGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTAAATTTTCGCGGCGTTTCAGGGTTACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 439 60</canonical_bands>
                <polymorphic_bands>940 60</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>501 439 60</canonical_bands>
                <polymorphic_bands>940 60</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAATTTTTGCATATTATTTGTT</pcr_primer_p1>
		<pcr_primer_p2>AAAATCTGAGAAAATTCCTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>CCAATTTTTGCATATTATTTGTTCCCCCATTTTTCCCGCCAAAAAATGTGAATTTTTGGCCCCGCCCCCCCGCCCCCACTTTTATAATCAATTTTTCTTTCGTTTTTTCGTCGTTTGCCGGATATGTGCAATAATTATTTTTGTCTCCCATTCTTCTGATGAGCAATCTATGCCCCGCCCCCCTCTCCCTATCATCATTTTTTCTCTGTCTGAAAATGAAGGAATTTTCTCAGATTTT</canonical_amplicon>
		<polymorphic_amplicon>CCAATTTTTGCATATTATTTGTTCCCCCATTTTTCCCGCCAAAAAATGTGAATTTTTGGKCCCGCCCCCCCGCCCCCACTTTTATAATCAATTTTTCTTTCGTTTTTTCGTCGTTTGCCGGATATGTGCAATAATTATTTTTGTCTCCCATTCTTCTGATGAGCAATCTATGCCCCGCCCCCCTCTCCCTATCATCATTTTTTCTCTGTCTGAAAATGAAGGAATTTTCTCAGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27848</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>413837</contig_pos>
        <strand>+</strand>
        <context>GCCCCCCCGC[C/T]YCCACTTTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCCCATTTTTCCCGCCAAAAAATGTGAATTTTTGGCCCCGCCCCCCCGC</left_flank>
        <right_flank>CCCACTTTTATAATCAATTTTTCTTTCGTTTTTTCGTCGTTTGCCGGATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGATTTCTAGGTCATGACCTAGTTTTTTGGATTTCTAGGTCATGGCCTAATTTTCAGATTTTTCGAAAATTTCAAAGATTTGCAATTTTTCTTCCAGACCACACAAAATCTTCGAATGGAAAATCAACGGTTGAAGGAGGAGAACGGAGCGCTGGTCAGGGTCATTTCGAAGATGACCATCTAGAACATTCTATGGAAAATTTATTTTTTATTGTTTTTTCTTTTTCTTCTCTAAAATTTTAAATTATTGATTTTTCCCTTTTTCCGCTCCTCCTCCTCTTTTCGTTTCGGGACCCATCATCATCATCATTTTTTTTTGTAAAAAATGCAAATACGCTCTATTGAGAATTTTCTCTATTCTATACTATTAGTTTCTATTTTTTTTCAAAAATTTCCTCGCTCACCGGGATCATACTGTACACGAACCAATTTTTGCATATTATTTGTTCCCCCATTTTTCCCGCCAAAAAATGTGAATTTTTGGCCCCGCCCCCCCGCCCCCACTTTTATAATCAATTTTTCTTTCGTTTTTTCGTCGTTTGCCGGATATGTGCAATAATTATTTTTGTCTCCCATTCTTCTGATGAGCAATCTATGCCCCGCCCCCCTCTCCCTATCATCATTTTTTCTCTGTCTGAAAATGAAGGAATTTTCTCAGATTTTTGGTTTTTTGAAAATTTTGAAAATGTAAAAAATTTTAAAAATTGGAAAAAAATTTTTTTTGGAAATTTTGATTTTTAGCATTTTTTGAAGAAAATAAGTTTAAATTGGCAAAATAGCGGACCAAAAGTTAAAAGGGCGTTTTTCGGATTACTGTAGATCACTGTAGCGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTAAATTTTCGCGGCGTTTCAGGGTTACTGTAGATTCAGAAAT</canonical>
            <polymorphic>TGGATTTCTAGGTCATGACCTAGTTTTTTGGATTTCTAGGTCATGGCCTAATTTTCAGATTTTTCGAAAATTTCAAAGATTTGCAATTTTTCTTCCAGACCACACAAAATCTTCGAATGGAAAATCAACGGTTGAAGGAGGAGAACGGAGCGCTGGTCAGGGTCATTTCGAAGATGACCATCTAGAACATTCTATGGAAAATTTATTTTTTATTGTTTTTTCTTTTTCTTCTCTAAAATTTTAAATTATTGATTTTTCCCTTTTTCCGCTCCTCCTCCTCTTTTCGTTTCGGGACCCATCATCATCATCATTTTTTTTTGTAAAAAATGCAAATACGCTCTATTGAGAATTTTCTCTATTCTATACTATTAGTTTCTATTTTTTTTCAAAAATTTCCTCGCTCACCGGGATCATACTGTACACGAACCAATTTTTGCATATTATTTGTTCCCCCATTTTTCCCGCCAAAAAATGTGAATTTTTGGCCCCGCCCCCCCGCYCCCACTTTTATAATCAATTTTTCTTTCGTTTTTTCGTCGTTTGCCGGATATGTGCAATAATTATTTTTGTCTCCCATTCTTCTGATGAGCAATCTATGCCCCGCCCCCCTCTCCCTATCATCATTTTTTCTCTGTCTGAAAATGAAGGAATTTTCTCAGATTTTTGGTTTTTTGAAAATTTTGAAAATGTAAAAAATTTTAAAAATTGGAAAAAAATTTTTTTTGGAAATTTTGATTTTTAGCATTTTTTGAAGAAAATAAGTTTAAATTGGCAAAATAGCGGACCAAAAGTTAAAAGGGCGTTTTTCGGATTACTGTAGATCACTGTAGCGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTAAATTTTCGCGGCGTTTCAGGGTTACTGTAGATTCAGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAATTTTTGCATATTATTTGTT</pcr_primer_p1>
		<pcr_primer_p2>AAAATCTGAGAAAATTCCTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>CCAATTTTTGCATATTATTTGTTCCCCCATTTTTCCCGCCAAAAAATGTGAATTTTTGGCCCCGCCCCCCCGCCCCCACTTTTATAATCAATTTTTCTTTCGTTTTTTCGTCGTTTGCCGGATATGTGCAATAATTATTTTTGTCTCCCATTCTTCTGATGAGCAATCTATGCCCCGCCCCCCTCTCCCTATCATCATTTTTTCTCTGTCTGAAAATGAAGGAATTTTCTCAGATTTT</canonical_amplicon>
		<polymorphic_amplicon>CCAATTTTTGCATATTATTTGTTCCCCCATTTTTCCCGCCAAAAAATGTGAATTTTTGGCCCCGCCCCCCCGCYCCCACTTTTATAATCAATTTTTCTTTCGTTTTTTCGTCGTTTGCCGGATATGTGCAATAATTATTTTTGTCTCCCATTCTTCTGATGAGCAATCTATGCCCCGCCCCCCTCTCCCTATCATCATTTTTTCTCTGTCTGAAAATGAAGGAATTTTCTCAGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27849</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>413838</contig_pos>
        <strand>+</strand>
        <context>CCCCCCCGCY[C/T]CCACTTTTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCCATTTTTCCCGCCAAAAAATGTGAATTTTTGGCCCCGCCCCCCCGCC</left_flank>
        <right_flank>CCACTTTTATAATCAATTTTTCTTTCGTTTTTTCGTCGTTTGCCGGATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATTTCTAGGTCATGACCTAGTTTTTTGGATTTCTAGGTCATGGCCTAATTTTCAGATTTTTCGAAAATTTCAAAGATTTGCAATTTTTCTTCCAGACCACACAAAATCTTCGAATGGAAAATCAACGGTTGAAGGAGGAGAACGGAGCGCTGGTCAGGGTCATTTCGAAGATGACCATCTAGAACATTCTATGGAAAATTTATTTTTTATTGTTTTTTCTTTTTCTTCTCTAAAATTTTAAATTATTGATTTTTCCCTTTTTCCGCTCCTCCTCCTCTTTTCGTTTCGGGACCCATCATCATCATCATTTTTTTTTGTAAAAAATGCAAATACGCTCTATTGAGAATTTTCTCTATTCTATACTATTAGTTTCTATTTTTTTTCAAAAATTTCCTCGCTCACCGGGATCATACTGTACACGAACCAATTTTTGCATATTATTTGTTCCCCCATTTTTCCCGCCAAAAAATGTGAATTTTTGGCCCCGCCCCCCCGCCCCCACTTTTATAATCAATTTTTCTTTCGTTTTTTCGTCGTTTGCCGGATATGTGCAATAATTATTTTTGTCTCCCATTCTTCTGATGAGCAATCTATGCCCCGCCCCCCTCTCCCTATCATCATTTTTTCTCTGTCTGAAAATGAAGGAATTTTCTCAGATTTTTGGTTTTTTGAAAATTTTGAAAATGTAAAAAATTTTAAAAATTGGAAAAAAATTTTTTTTGGAAATTTTGATTTTTAGCATTTTTTGAAGAAAATAAGTTTAAATTGGCAAAATAGCGGACCAAAAGTTAAAAGGGCGTTTTTCGGATTACTGTAGATCACTGTAGCGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTAAATTTTCGCGGCGTTTCAGGGTTACTGTAGATTCAGAAATT</canonical>
            <polymorphic>GGATTTCTAGGTCATGACCTAGTTTTTTGGATTTCTAGGTCATGGCCTAATTTTCAGATTTTTCGAAAATTTCAAAGATTTGCAATTTTTCTTCCAGACCACACAAAATCTTCGAATGGAAAATCAACGGTTGAAGGAGGAGAACGGAGCGCTGGTCAGGGTCATTTCGAAGATGACCATCTAGAACATTCTATGGAAAATTTATTTTTTATTGTTTTTTCTTTTTCTTCTCTAAAATTTTAAATTATTGATTTTTCCCTTTTTCCGCTCCTCCTCCTCTTTTCGTTTCGGGACCCATCATCATCATCATTTTTTTTTGTAAAAAATGCAAATACGCTCTATTGAGAATTTTCTCTATTCTATACTATTAGTTTCTATTTTTTTTCAAAAATTTCCTCGCTCACCGGGATCATACTGTACACGAACCAATTTTTGCATATTATTTGTTCCCCCATTTTTCCCGCCAAAAAATGTGAATTTTTGGCCCCGCCCCCCCGCCYCCACTTTTATAATCAATTTTTCTTTCGTTTTTTCGTCGTTTGCCGGATATGTGCAATAATTATTTTTGTCTCCCATTCTTCTGATGAGCAATCTATGCCCCGCCCCCCTCTCCCTATCATCATTTTTTCTCTGTCTGAAAATGAAGGAATTTTCTCAGATTTTTGGTTTTTTGAAAATTTTGAAAATGTAAAAAATTTTAAAAATTGGAAAAAAATTTTTTTTGGAAATTTTGATTTTTAGCATTTTTTGAAGAAAATAAGTTTAAATTGGCAAAATAGCGGACCAAAAGTTAAAAGGGCGTTTTTCGGATTACTGTAGATCACTGTAGCGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTAAATTTTCGCGGCGTTTCAGGGTTACTGTAGATTCAGAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAATTTTTGCATATTATTTGTT</pcr_primer_p1>
		<pcr_primer_p2>AAAATCTGAGAAAATTCCTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>CCAATTTTTGCATATTATTTGTTCCCCCATTTTTCCCGCCAAAAAATGTGAATTTTTGGCCCCGCCCCCCCGCCCCCACTTTTATAATCAATTTTTCTTTCGTTTTTTCGTCGTTTGCCGGATATGTGCAATAATTATTTTTGTCTCCCATTCTTCTGATGAGCAATCTATGCCCCGCCCCCCTCTCCCTATCATCATTTTTTCTCTGTCTGAAAATGAAGGAATTTTCTCAGATTTT</canonical_amplicon>
		<polymorphic_amplicon>CCAATTTTTGCATATTATTTGTTCCCCCATTTTTCCCGCCAAAAAATGTGAATTTTTGGCCCCGCCCCCCCGCCYCCACTTTTATAATCAATTTTTCTTTCGTTTTTTCGTCGTTTGCCGGATATGTGCAATAATTATTTTTGTCTCCCATTCTTCTGATGAGCAATCTATGCCCCGCCCCCCTCTCCCTATCATCATTTTTTCTCTGTCTGAAAATGAAGGAATTTTCTCAGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27850</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>414247</contig_pos>
        <strand></strand>
        <context>attttctgga[T/C]tactgtactt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGA</left_flank>
        <right_flank>TACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATACTGTACACGAACCAATTTTTGCATATTATTTGTTCCCCCATTTTTCCCGCCAAAAAATGTGAATTTTTGGCCCCGCCCCCCCGCCCCCACTTTTATAATCAATTTTTCTTTCGTTTTTTCGTCGTTTGCCGGATATGTGCAATAATTATTTTTGTCTCCCATTCTTCTGATGAGCAATCTATGCCCCGCCCCCCTCTCCCTATCATCATTTTTTCTCTGTCTGAAAATGAAGGAATTTTCTCAGATTTTTGGTTTTTTGAAAATTTTGAAAATGTAAAAAATTTTAAAAATTGGAAAAAAATTTTTTTTGGAAATTTTGATTTTTAGCATTTTTTGAAGAAAATAAGTTTAAATTGGCAAAATAGCGGACCAAAAGTTAAAAGGGCGTTTTTCGGATTACTGTAGATCACTGTAGCGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTAAATTTTCGCGGCGTTTCAGGGTTACTGTAGATTCAGAAATTTTTGGATTTCTAGGCTATTCCCTAGTTTTTTGAATTTCTAGGCCATGAGTTTTCTCAGATTTTTTTTTGGATTACTGTAGTTCAGGGTTACTGTAGCTTCTCAATTTTTTTTTGAGTTTCCCAACATTTGTGGATTACTGTAGCGTTTTCCATTTTCGATATTTTCGCGGCGTTTCAGGGTACTACTGCAGATTTAAAAAATTTGAGATTCCAGGATTACTGTAGAATGTTTTTTTTGTAGATTTTCAAAAAATTTTATTGAAAATGTTTGAAAAAGTCTAGACAATTCCAGAAAAAATTCACTTCCAAATTTCAGCCAACGAGTCAAAGTGGTGCTGTGTTTCTTCCTGAAAAATTTAAGTTTTTTTTGAAAAATTCGAAAAATCGGTGATGAAGATTTGAATTTTCG</canonical>
            <polymorphic>TCATACTGTACACGAACCAATTTTTGCATATTATTTGTTCCCCCATTTTTCCCGCCAAAAAATGTGAATTTTTGGCCCCGCCCCCCCGCCCCCACTTTTATAATCAATTTTTCTTTCGTTTTTTCGTCGTTTGCCGGATATGTGCAATAATTATTTTTGTCTCCCATTCTTCTGATGAGCAATCTATGCCCCGCCCCCCTCTCCCTATCATCATTTTTTCTCTGTCTGAAAATGAAGGAATTTTCTCAGATTTTTGGTTTTTTGAAAATTTTGAAAATGTAAAAAATTTTAAAAATTGGAAAAAAATTTTTTTTGGAAATTTTGATTTTTAGCATTTTTTGAAGAAAATAAGTTTAAATTGGCAAAATAGCGGACCAAAAGTTAAAAGGGCGTTTTTCGGATTACTGTAGATCACTGTAGCGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGAYTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTAAATTTTCGCGGCGTTTCAGGGTTACTGTAGATTCAGAAATTTTTGGATTTCTAGGCTATTCCCTAGTTTTTTGAATTTCTAGGCCATGAGTTTTCTCAGATTTTTTTTTGGATTACTGTAGTTCAGGGTTACTGTAGCTTCTCAATTTTTTTTTGAGTTTCCCAACATTTGTGGATTACTGTAGCGTTTTCCATTTTCGATATTTTCGCGGCGTTTCAGGGTACTACTGCAGATTTAAAAAATTTGAGATTCCAGGATTACTGTAGAATGTTTTTTTTGTAGATTTTCAAAAAATTTTATTGAAAATGTTTGAAAAAGTCTAGACAATTCCAGAAAAAATTCACTTCCAAATTTCAGCCAACGAGTCAAAGTGGTGCTGTGTTTCTTCCTGAAAAATTTAAGTTTTTTTTGAAAAATTCGAAAAATCGGTGATGAAGATTTGAATTTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGTTTAAATTGGCAAAATAGC</pcr_primer_p1>
		<pcr_primer_p2>CTGAATCTACAGTAACCCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TAAGTTTAAATTGGCAAAATAGCGGACCAAAAGTTAAAAGGGCGTTTTTCGGATTACTGTAGATCACTGTAGCGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTAAATTTTCGCGGCGTTTCAGGGTTACTGTAGATTCAG</canonical_amplicon>
		<polymorphic_amplicon>TAAGTTTAAATTGGCAAAATAGCGGACCAAAAGTTAAAAGGGCGTTTTTCGGATTACTGTAGATCACTGTAGCGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGAYTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTAAATTTTCGCGGCGTTTCAGGGTTACTGTAGATTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27851</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>414354</contig_pos>
        <strand></strand>
        <context>atttctaggc[T/C]atkmcctagt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CGCGGCGTTTCAGGGTTACTGTAGATTCAGAAATTTTTGGATTTCTAGGC</left_flank>
        <right_flank>ATTCCCTAGTTTTTTGAATTTCTAGGCCATGAGTTTTCTCAGATTTTTTT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTCTTTCGTTTTTTCGTCGTTTGCCGGATATGTGCAATAATTATTTTTGTCTCCCATTCTTCTGATGAGCAATCTATGCCCCGCCCCCCTCTCCCTATCATCATTTTTTCTCTGTCTGAAAATGAAGGAATTTTCTCAGATTTTTGGTTTTTTGAAAATTTTGAAAATGTAAAAAATTTTAAAAATTGGAAAAAAATTTTTTTTGGAAATTTTGATTTTTAGCATTTTTTGAAGAAAATAAGTTTAAATTGGCAAAATAGCGGACCAAAAGTTAAAAGGGCGTTTTTCGGATTACTGTAGATCACTGTAGCGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTAAATTTTCGCGGCGTTTCAGGGTTACTGTAGATTCAGAAATTTTTGGATTTCTAGGCTATTCCCTAGTTTTTTGAATTTCTAGGCCATGAGTTTTCTCAGATTTTTTTTTGGATTACTGTAGTTCAGGGTTACTGTAGCTTCTCAATTTTTTTTTGAGTTTCCCAACATTTGTGGATTACTGTAGCGTTTTCCATTTTCGATATTTTCGCGGCGTTTCAGGGTACTACTGCAGATTTAAAAAATTTGAGATTCCAGGATTACTGTAGAATGTTTTTTTTGTAGATTTTCAAAAAATTTTATTGAAAATGTTTGAAAAAGTCTAGACAATTCCAGAAAAAATTCACTTCCAAATTTCAGCCAACGAGTCAAAGTGGTGCTGTGTTTCTTCCTGAAAAATTTAAGTTTTTTTTGAAAAATTCGAAAAATCGGTGATGAAGATTTGAATTTTCGAAATTTCTAGAAATTTGTGGAATTATCGAATTTTCAGATGATTTGAACTTTTCCAGAATTTTCAAGTTTTTTTTTGAAATTTTTGAAAAGTTATATTTGCATTTTGT</canonical>
            <polymorphic>TTTTTCTTTCGTTTTTTCGTCGTTTGCCGGATATGTGCAATAATTATTTTTGTCTCCCATTCTTCTGATGAGCAATCTATGCCCCGCCCCCCTCTCCCTATCATCATTTTTTCTCTGTCTGAAAATGAAGGAATTTTCTCAGATTTTTGGTTTTTTGAAAATTTTGAAAATGTAAAAAATTTTAAAAATTGGAAAAAAATTTTTTTTGGAAATTTTGATTTTTAGCATTTTTTGAAGAAAATAAGTTTAAATTGGCAAAATAGCGGACCAAAAGTTAAAAGGGCGTTTTTCGGATTACTGTAGATCACTGTAGCGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTAAATTTTCGCGGCGTTTCAGGGTTACTGTAGATTCAGAAATTTTTGGATTTCTAGGCYATTCCCTAGTTTTTTGAATTTCTAGGCCATGAGTTTTCTCAGATTTTTTTTTGGATTACTGTAGTTCAGGGTTACTGTAGCTTCTCAATTTTTTTTTGAGTTTCCCAACATTTGTGGATTACTGTAGCGTTTTCCATTTTCGATATTTTCGCGGCGTTTCAGGGTACTACTGCAGATTTAAAAAATTTGAGATTCCAGGATTACTGTAGAATGTTTTTTTTGTAGATTTTCAAAAAATTTTATTGAAAATGTTTGAAAAAGTCTAGACAATTCCAGAAAAAATTCACTTCCAAATTTCAGCCAACGAGTCAAAGTGGTGCTGTGTTTCTTCCTGAAAAATTTAAGTTTTTTTTGAAAAATTCGAAAAATCGGTGATGAAGATTTGAATTTTCGAAATTTCTAGAAATTTGTGGAATTATCGAATTTTCAGATGATTTGAACTTTTCCAGAATTTTCAAGTTTTTTTTTGAAATTTTTGAAAAGTTATATTTGCATTTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>498 220 200 54 28</canonical_bands>
                <polymorphic_bands>526 220 200 54</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTTTTCTAGTTTCTGGATTTT</pcr_primer_p1>
		<pcr_primer_p2>AGAAGCTACAGTAACCCTGAACT</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>CGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTAAATTTTCGCGGCGTTTCAGGGTTACTGTAGATTCAGAAATTTTTGGATTTCTAGGCTATTCCCTAGTTTTTTGAATTTCTAGGCCATGAGTTTTCTCAGATTTTTTTTTGGATTACTGTAGTTCAGGGTTACTGTAGCTTCT</canonical_amplicon>
		<polymorphic_amplicon>CGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTAAATTTTCGCGGCGTTTCAGGGTTACTGTAGATTCAGAAATTTTTGGATTTCTAGGCYATTCCCTAGTTTTTTGAATTTCTAGGCCATGAGTTTTCTCAGATTTTTTTTTGGATTACTGTAGTTCAGGGTTACTGTAGCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27852</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>414357</contig_pos>
        <strand></strand>
        <context>tctaggcyat[T/G]mcctagtttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GGCGTTTCAGGGTTACTGTAGATTCAGAAATTTTTGGATTTCTAGGCTAT</left_flank>
        <right_flank>CCCTAGTTTTTTGAATTTCTAGGCCATGAGTTTTCTCAGATTTTTTTTTG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTTCGTTTTTTCGTCGTTTGCCGGATATGTGCAATAATTATTTTTGTCTCCCATTCTTCTGATGAGCAATCTATGCCCCGCCCCCCTCTCCCTATCATCATTTTTTCTCTGTCTGAAAATGAAGGAATTTTCTCAGATTTTTGGTTTTTTGAAAATTTTGAAAATGTAAAAAATTTTAAAAATTGGAAAAAAATTTTTTTTGGAAATTTTGATTTTTAGCATTTTTTGAAGAAAATAAGTTTAAATTGGCAAAATAGCGGACCAAAAGTTAAAAGGGCGTTTTTCGGATTACTGTAGATCACTGTAGCGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTAAATTTTCGCGGCGTTTCAGGGTTACTGTAGATTCAGAAATTTTTGGATTTCTAGGCTATTCCCTAGTTTTTTGAATTTCTAGGCCATGAGTTTTCTCAGATTTTTTTTTGGATTACTGTAGTTCAGGGTTACTGTAGCTTCTCAATTTTTTTTTGAGTTTCCCAACATTTGTGGATTACTGTAGCGTTTTCCATTTTCGATATTTTCGCGGCGTTTCAGGGTACTACTGCAGATTTAAAAAATTTGAGATTCCAGGATTACTGTAGAATGTTTTTTTTGTAGATTTTCAAAAAATTTTATTGAAAATGTTTGAAAAAGTCTAGACAATTCCAGAAAAAATTCACTTCCAAATTTCAGCCAACGAGTCAAAGTGGTGCTGTGTTTCTTCCTGAAAAATTTAAGTTTTTTTTGAAAAATTCGAAAAATCGGTGATGAAGATTTGAATTTTCGAAATTTCTAGAAATTTGTGGAATTATCGAATTTTCAGATGATTTGAACTTTTCCAGAATTTTCAAGTTTTTTTTTGAAATTTTTGAAAAGTTATATTTGCATTTTGTGTT</canonical>
            <polymorphic>TTCTTTCGTTTTTTCGTCGTTTGCCGGATATGTGCAATAATTATTTTTGTCTCCCATTCTTCTGATGAGCAATCTATGCCCCGCCCCCCTCTCCCTATCATCATTTTTTCTCTGTCTGAAAATGAAGGAATTTTCTCAGATTTTTGGTTTTTTGAAAATTTTGAAAATGTAAAAAATTTTAAAAATTGGAAAAAAATTTTTTTTGGAAATTTTGATTTTTAGCATTTTTTGAAGAAAATAAGTTTAAATTGGCAAAATAGCGGACCAAAAGTTAAAAGGGCGTTTTTCGGATTACTGTAGATCACTGTAGCGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTAAATTTTCGCGGCGTTTCAGGGTTACTGTAGATTCAGAAATTTTTGGATTTCTAGGCTATKCCCTAGTTTTTTGAATTTCTAGGCCATGAGTTTTCTCAGATTTTTTTTTGGATTACTGTAGTTCAGGGTTACTGTAGCTTCTCAATTTTTTTTTGAGTTTCCCAACATTTGTGGATTACTGTAGCGTTTTCCATTTTCGATATTTTCGCGGCGTTTCAGGGTACTACTGCAGATTTAAAAAATTTGAGATTCCAGGATTACTGTAGAATGTTTTTTTTGTAGATTTTCAAAAAATTTTATTGAAAATGTTTGAAAAAGTCTAGACAATTCCAGAAAAAATTCACTTCCAAATTTCAGCCAACGAGTCAAAGTGGTGCTGTGTTTCTTCCTGAAAAATTTAAGTTTTTTTTGAAAAATTCGAAAAATCGGTGATGAAGATTTGAATTTTCGAAATTTCTAGAAATTTGTGGAATTATCGAATTTTCAGATGATTTGAACTTTTCCAGAATTTTCAAGTTTTTTTTTGAAATTTTTGAAAAGTTATATTTGCATTTTGTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTTTCTAGTTTCTGGATTTT</pcr_primer_p1>
		<pcr_primer_p2>AGAAGCTACAGTAACCCTGAACT</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>CGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTAAATTTTCGCGGCGTTTCAGGGTTACTGTAGATTCAGAAATTTTTGGATTTCTAGGCTATTCCCTAGTTTTTTGAATTTCTAGGCCATGAGTTTTCTCAGATTTTTTTTTGGATTACTGTAGTTCAGGGTTACTGTAGCTTCT</canonical_amplicon>
		<polymorphic_amplicon>CGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTAAATTTTCGCGGCGTTTCAGGGTTACTGTAGATTCAGAAATTTTTGGATTTCTAGGCTATKCCCTAGTTTTTTGAATTTCTAGGCCATGAGTTTTCTCAGATTTTTTTTTGGATTACTGTAGTTCAGGGTTACTGTAGCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27853</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>414358</contig_pos>
        <strand></strand>
        <context>ctaggcyatk[C/A]cctagttttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GCGTTTCAGGGTTACTGTAGATTCAGAAATTTTTGGATTTCTAGGCTATT</left_flank>
        <right_flank>CCTAGTTTTTTGAATTTCTAGGCCATGAGTTTTCTCAGATTTTTTTTTGG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTTCGTTTTTTCGTCGTTTGCCGGATATGTGCAATAATTATTTTTGTCTCCCATTCTTCTGATGAGCAATCTATGCCCCGCCCCCCTCTCCCTATCATCATTTTTTCTCTGTCTGAAAATGAAGGAATTTTCTCAGATTTTTGGTTTTTTGAAAATTTTGAAAATGTAAAAAATTTTAAAAATTGGAAAAAAATTTTTTTTGGAAATTTTGATTTTTAGCATTTTTTGAAGAAAATAAGTTTAAATTGGCAAAATAGCGGACCAAAAGTTAAAAGGGCGTTTTTCGGATTACTGTAGATCACTGTAGCGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTAAATTTTCGCGGCGTTTCAGGGTTACTGTAGATTCAGAAATTTTTGGATTTCTAGGCTATTCCCTAGTTTTTTGAATTTCTAGGCCATGAGTTTTCTCAGATTTTTTTTTGGATTACTGTAGTTCAGGGTTACTGTAGCTTCTCAATTTTTTTTTGAGTTTCCCAACATTTGTGGATTACTGTAGCGTTTTCCATTTTCGATATTTTCGCGGCGTTTCAGGGTACTACTGCAGATTTAAAAAATTTGAGATTCCAGGATTACTGTAGAATGTTTTTTTTGTAGATTTTCAAAAAATTTTATTGAAAATGTTTGAAAAAGTCTAGACAATTCCAGAAAAAATTCACTTCCAAATTTCAGCCAACGAGTCAAAGTGGTGCTGTGTTTCTTCCTGAAAAATTTAAGTTTTTTTTGAAAAATTCGAAAAATCGGTGATGAAGATTTGAATTTTCGAAATTTCTAGAAATTTGTGGAATTATCGAATTTTCAGATGATTTGAACTTTTCCAGAATTTTCAAGTTTTTTTTTGAAATTTTTGAAAAGTTATATTTGCATTTTGTGTTT</canonical>
            <polymorphic>TCTTTCGTTTTTTCGTCGTTTGCCGGATATGTGCAATAATTATTTTTGTCTCCCATTCTTCTGATGAGCAATCTATGCCCCGCCCCCCTCTCCCTATCATCATTTTTTCTCTGTCTGAAAATGAAGGAATTTTCTCAGATTTTTGGTTTTTTGAAAATTTTGAAAATGTAAAAAATTTTAAAAATTGGAAAAAAATTTTTTTTGGAAATTTTGATTTTTAGCATTTTTTGAAGAAAATAAGTTTAAATTGGCAAAATAGCGGACCAAAAGTTAAAAGGGCGTTTTTCGGATTACTGTAGATCACTGTAGCGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTAAATTTTCGCGGCGTTTCAGGGTTACTGTAGATTCAGAAATTTTTGGATTTCTAGGCTATTMCCTAGTTTTTTGAATTTCTAGGCCATGAGTTTTCTCAGATTTTTTTTTGGATTACTGTAGTTCAGGGTTACTGTAGCTTCTCAATTTTTTTTTGAGTTTCCCAACATTTGTGGATTACTGTAGCGTTTTCCATTTTCGATATTTTCGCGGCGTTTCAGGGTACTACTGCAGATTTAAAAAATTTGAGATTCCAGGATTACTGTAGAATGTTTTTTTTGTAGATTTTCAAAAAATTTTATTGAAAATGTTTGAAAAAGTCTAGACAATTCCAGAAAAAATTCACTTCCAAATTTCAGCCAACGAGTCAAAGTGGTGCTGTGTTTCTTCCTGAAAAATTTAAGTTTTTTTTGAAAAATTCGAAAAATCGGTGATGAAGATTTGAATTTTCGAAATTTCTAGAAATTTGTGGAATTATCGAATTTTCAGATGATTTGAACTTTTCCAGAATTTTCAAGTTTTTTTTTGAAATTTTTGAAAAGTTATATTTGCATTTTGTGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTTTCTAGTTTCTGGATTTT</pcr_primer_p1>
		<pcr_primer_p2>AGAAGCTACAGTAACCCTGAACT</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>CGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTAAATTTTCGCGGCGTTTCAGGGTTACTGTAGATTCAGAAATTTTTGGATTTCTAGGCTATTCCCTAGTTTTTTGAATTTCTAGGCCATGAGTTTTCTCAGATTTTTTTTTGGATTACTGTAGTTCAGGGTTACTGTAGCTTCT</canonical_amplicon>
		<polymorphic_amplicon>CGTTTTCTAGTTTCTGGATTTTCGGATGTTGGGTTACTGTAGCGTTTTCAATTTTTTTCGAATTCTCAAATTTTCTGGATTACTGTACTTTAGGATTACTGTAGATTACTGTAGCGTTTTCCATTTTTTAAATTTTCGCGGCGTTTCAGGGTTACTGTAGATTCAGAAATTTTTGGATTTCTAGGCTATTMCCTAGTTTTTTGAATTTCTAGGCCATGAGTTTTCTCAGATTTTTTTTTGGATTACTGTAGTTCAGGGTTACTGTAGCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27854</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>425780</contig_pos>
        <strand>+</strand>
        <context>TCAAAAAATT[C/T]TCAAATTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTTGAATTCCAAAATATAGATTCAGATTTTTGGATTTTCAAAAAATT</left_flank>
        <right_flank>TCAAATTTTCAGAAAACGCTAATGCTCTCCAAATATACTGTTTTTCACAC</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGCCAGACAACGAGACACGCTGCGTCTTCAGCCTCCTAATCTTCAAATGGCGGTATCTCGGCACCTAGGAGAGCTAGAAAGCTTGTTTTGGGACAGAATTGAAAGTAATTTTAGCTGTGTCTCGATTCGAAAAAAATCTGACAATTTTAGAAAAATTTTGAATTTCGAAAAAAATTGAAAATGAGCAAAAGTGCTGAATATTTGTAAAATATCAAGAGAGCTCCAGTTTGGTACAAAGAGGACGTTTCAGGCCACCTAGAAGCCCAGATACAGCGGTTTAAAACTCAAATGGTTAGAGACGCAGTGTGTCTTGTCGTCTGGCGTCTCTAGCCTCCCGAAACTTCAAATGGCTATATCTCGGCTTCGAGATGAGCTAGAAAGTTGAAAACTGGACAGAAATGTGTGAAAGACAGTTGATTTTGGGAAGAAAGGTTTCTGAGAATTCGAAAAATTTGAATTCCAAAATATAGATTCAGATTTTTGGATTTTCAAAAAATTTTCAAATTTTCAGAAAACGCTAATGCTCTCCAAATATACTGTTTTTCACACAATTCTGTCTAAAAATCAACTTTCTAGGTCATCTCGAAGCCGAGATACAGCGATTTGACGTTTAGGAGGCTAGAGACGTCAGACGATGAGACACACTGCGTCTCTACCCTCATGAAACTTCAAATGACCATGTCTCGGTTTCTAGATGAGCTAGAATAGTGGTTTTTGGACAGAACTGCGTGCAATAGAGAGAAGTATTAGATTTTTGGGATTTTTCAATAATTTTTGGAATTTAGATATTGCTAGAAAGGTGATTTTTAAACGAATTTGTCATAAAAAATTTAGGCTATTTTCGGAAAACTTAATTTTATGGCTTTTTTTCAAAATTCCAATAATTTCAATGTTCTGATACATGATGACATTGAACATTGAATTTGGAACATTTCTGTTAAACTTTCATGAAACTTCAAATGACTGTATCTCGGCTCCTCGAACAACTAGAAACTTGTT</canonical>
            <polymorphic>ACGCCAGACAACGAGACACGCTGCGTCTTCAGCCTCCTAATCTTCAAATGGCGGTATCTCGGCACCTAGGAGAGCTAGAAAGCTTGTTTTGGGACAGAATTGAAAGTAATTTTAGCTGTGTCTCGATTCGAAAAAAATCTGACAATTTTAGAAAAATTTTGAATTTCGAAAAAAATTGAAAATGAGCAAAAGTGCTGAATATTTGTAAAATATCAAGAGAGCTCCAGTTTGGTACAAAGAGGACGTTTCAGGCCACCTAGAAGCCCAGATACAGCGGTTTAAAACTCAAATGGTTAGAGACGCAGTGTGTCTTGTCGTCTGGCGTCTCTAGCCTCCCGAAACTTCAAATGGCTATATCTCGGCTTCGAGATGAGCTAGAAAGTTGAAAACTGGACAGAAATGTGTGAAAGACAGTTGATTTTGGGAAGAAAGGTTTCTGAGAATTCGAAAAATTTGAATTCCAAAATATAGATTCAGATTTTTGGATTTTCAAAAAATTYTCAAATTTTCAGAAAACGCTAATGCTCTCCAAATATACTGTTTTTCACACAATTCTGTCTAAAAATCAACTTTCTAGGTCATCTCGAAGCCGAGATACAGCGATTTGACGTTTAGGAGGCTAGAGACGTCAGACGATGAGACACACTGCGTCTCTACCCTCATGAAACTTCAAATGACCATGTCTCGGTTTCTAGATGAGCTAGAATAGTGGTTTTTGGACAGAACTGCGTGCAATAGAGAGAAGTATTAGATTTTTGGGATTTTTCAATAATTTTTGGAATTTAGATATTGCTAGAAAGGTGATTTTTAAACGAATTTGTCATAAAAAATTTAGGCTATTTTCGGAAAACTTAATTTTATGGCTTTTTTTCAAAATTCCAATAATTTCAATGTTCTGATACATGATGACATTGAACATTGAATTTGGAACATTTCTGTTAAACTTTCATGAAACTTCAAATGACTGTATCTCGGCTCCTCGAACAACTAGAAACTTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>280 276 154 79 47 46 39 35 14 9 8 7 6</canonical_bands>
                <polymorphic_bands>280 276 154 79 47 47 46 35 14 9 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATTTTGGGAAGAAAGGTT</pcr_primer_p1>
		<pcr_primer_p2>TCCCAAAAATCTAATACTTCTCTC</pcr_primer_p2>
		<pcr_amplicon_size>346</pcr_amplicon_size>
		<canonical_amplicon>TGATTTTGGGAAGAAAGGTTTCTGAGAATTCGAAAAATTTGAATTCCAAAATATAGATTCAGATTTTTGGATTTTCAAAAAATTTTCAAATTTTCAGAAAACGCTAATGCTCTCCAAATATACTGTTTTTCACACAATTCTGTCTAAAAATCAACTTTCTAGGTCATCTCGAAGCCGAGATACAGCGATTTGACGTTTAGGAGGCTAGAGACGTCAGACGATGAGACACACTGCGTCTCTACCCTCATGAAACTTCAAATGACCATGTCTCGGTTTCTAGATGAGCTAGAATAGTGGTTTTTGGACAGAACTGCGTGCAATAGAGAGAAGTATTAGATTTTTGGGA</canonical_amplicon>
		<polymorphic_amplicon>TGATTTTGGGAAGAAAGGTTTCTGAGAATTCGAAAAATTTGAATTCCAAAATATAGATTCAGATTTTTGGATTTTCAAAAAATTYTCAAATTTTCAGAAAACGCTAATGCTCTCCAAATATACTGTTTTTCACACAATTCTGTCTAAAAATCAACTTTCTAGGTCATCTCGAAGCCGAGATACAGCGATTTGACGTTTAGGAGGCTAGAGACGTCAGACGATGAGACACACTGCGTCTCTACCCTCATGAAACTTCAAATGACCATGTCTCGGTTTCTAGATGAGCTAGAATAGTGGTTTTTGGACAGAACTGCGTGCAATAGAGAGAAGTATTAGATTTTTGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27855</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>425802</contig_pos>
        <strand>+</strand>
        <context>GAAAACGCTA[A/T]TGCTCTCCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTCAGATTTTTGGATTTTCAAAAAATTTTCAAATTTTCAGAAAACGCTA</left_flank>
        <right_flank>TGCTCTCCAAATATACTGTTTTTCACACAATTCTGTCTAAAAATCAACTT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGTCTTCAGCCTCCTAATCTTCAAATGGCGGTATCTCGGCACCTAGGAGAGCTAGAAAGCTTGTTTTGGGACAGAATTGAAAGTAATTTTAGCTGTGTCTCGATTCGAAAAAAATCTGACAATTTTAGAAAAATTTTGAATTTCGAAAAAAATTGAAAATGAGCAAAAGTGCTGAATATTTGTAAAATATCAAGAGAGCTCCAGTTTGGTACAAAGAGGACGTTTCAGGCCACCTAGAAGCCCAGATACAGCGGTTTAAAACTCAAATGGTTAGAGACGCAGTGTGTCTTGTCGTCTGGCGTCTCTAGCCTCCCGAAACTTCAAATGGCTATATCTCGGCTTCGAGATGAGCTAGAAAGTTGAAAACTGGACAGAAATGTGTGAAAGACAGTTGATTTTGGGAAGAAAGGTTTCTGAGAATTCGAAAAATTTGAATTCCAAAATATAGATTCAGATTTTTGGATTTTCAAAAAATTTTCAAATTTTCAGAAAACGCTAATGCTCTCCAAATATACTGTTTTTCACACAATTCTGTCTAAAAATCAACTTTCTAGGTCATCTCGAAGCCGAGATACAGCGATTTGACGTTTAGGAGGCTAGAGACGTCAGACGATGAGACACACTGCGTCTCTACCCTCATGAAACTTCAAATGACCATGTCTCGGTTTCTAGATGAGCTAGAATAGTGGTTTTTGGACAGAACTGCGTGCAATAGAGAGAAGTATTAGATTTTTGGGATTTTTCAATAATTTTTGGAATTTAGATATTGCTAGAAAGGTGATTTTTAAACGAATTTGTCATAAAAAATTTAGGCTATTTTCGGAAAACTTAATTTTATGGCTTTTTTTCAAAATTCCAATAATTTCAATGTTCTGATACATGATGACATTGAACATTGAATTTGGAACATTTCTGTTAAACTTTCATGAAACTTCAAATGACTGTATCTCGGCTCCTCGAACAACTAGAAACTTGTTTTTTTTGACAGCATTGAAAGGT</canonical>
            <polymorphic>GCGTCTTCAGCCTCCTAATCTTCAAATGGCGGTATCTCGGCACCTAGGAGAGCTAGAAAGCTTGTTTTGGGACAGAATTGAAAGTAATTTTAGCTGTGTCTCGATTCGAAAAAAATCTGACAATTTTAGAAAAATTTTGAATTTCGAAAAAAATTGAAAATGAGCAAAAGTGCTGAATATTTGTAAAATATCAAGAGAGCTCCAGTTTGGTACAAAGAGGACGTTTCAGGCCACCTAGAAGCCCAGATACAGCGGTTTAAAACTCAAATGGTTAGAGACGCAGTGTGTCTTGTCGTCTGGCGTCTCTAGCCTCCCGAAACTTCAAATGGCTATATCTCGGCTTCGAGATGAGCTAGAAAGTTGAAAACTGGACAGAAATGTGTGAAAGACAGTTGATTTTGGGAAGAAAGGTTTCTGAGAATTCGAAAAATTTGAATTCCAAAATATAGATTCAGATTTTTGGATTTTCAAAAAATTTTCAAATTTTCAGAAAACGCTAWTGCTCTCCAAATATACTGTTTTTCACACAATTCTGTCTAAAAATCAACTTTCTAGGTCATCTCGAAGCCGAGATACAGCGATTTGACGTTTAGGAGGCTAGAGACGTCAGACGATGAGACACACTGCGTCTCTACCCTCATGAAACTTCAAATGACCATGTCTCGGTTTCTAGATGAGCTAGAATAGTGGTTTTTGGACAGAACTGCGTGCAATAGAGAGAAGTATTAGATTTTTGGGATTTTTCAATAATTTTTGGAATTTAGATATTGCTAGAAAGGTGATTTTTAAACGAATTTGTCATAAAAAATTTAGGCTATTTTCGGAAAACTTAATTTTATGGCTTTTTTTCAAAATTCCAATAATTTCAATGTTCTGATACATGATGACATTGAACATTGAATTTGGAACATTTCTGTTAAACTTTCATGAAACTTCAAATGACTGTATCTCGGCTCCTCGAACAACTAGAAACTTGTTTTTTTTGACAGCATTGAAAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATTCCAAAATATAGATTCAGA</pcr_primer_p1>
		<pcr_primer_p2>TCCCAAAAATCTAATACTTCTCTC</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>TGAATTCCAAAATATAGATTCAGATTTTTGGATTTTCAAAAAATTTTCAAATTTTCAGAAAACGCTAATGCTCTCCAAATATACTGTTTTTCACACAATTCTGTCTAAAAATCAACTTTCTAGGTCATCTCGAAGCCGAGATACAGCGATTTGACGTTTAGGAGGCTAGAGACGTCAGACGATGAGACACACTGCGTCTCTACCCTCATGAAACTTCAAATGACCATGTCTCGGTTTCTAGATGAGCTAGAATAGTGGTTTTTGGACAGAACTGCGTGCAATAGAGAGAAGTATTAGATTTTTGGGA</canonical_amplicon>
		<polymorphic_amplicon>TGAATTCCAAAATATAGATTCAGATTTTTGGATTTTCAAAAAATTTTCAAATTTTCAGAAAACGCTAWTGCTCTCCAAATATACTGTTTTTCACACAATTCTGTCTAAAAATCAACTTTCTAGGTCATCTCGAAGCCGAGATACAGCGATTTGACGTTTAGGAGGCTAGAGACGTCAGACGATGAGACACACTGCGTCTCTACCCTCATGAAACTTCAAATGACCATGTCTCGGTTTCTAGATGAGCTAGAATAGTGGTTTTTGGACAGAACTGCGTGCAATAGAGAGAAGTATTAGATTTTTGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27856</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>425830</contig_pos>
        <strand></strand>
        <context>GTTTTTCACA[C/A]aattctgtct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTCAAATTTTCAGAAAACGCTAATGCTCTCCAAATATACTGTTTTTCACA</left_flank>
        <right_flank>AATTCTGTCTAAAAATCAACTTTCTAGGTCATCTCGAAGCCGAGATACAG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGGTATCTCGGCACCTAGGAGAGCTAGAAAGCTTGTTTTGGGACAGAATTGAAAGTAATTTTAGCTGTGTCTCGATTCGAAAAAAATCTGACAATTTTAGAAAAATTTTGAATTTCGAAAAAAATTGAAAATGAGCAAAAGTGCTGAATATTTGTAAAATATCAAGAGAGCTCCAGTTTGGTACAAAGAGGACGTTTCAGGCCACCTAGAAGCCCAGATACAGCGGTTTAAAACTCAAATGGTTAGAGACGCAGTGTGTCTTGTCGTCTGGCGTCTCTAGCCTCCCGAAACTTCAAATGGCTATATCTCGGCTTCGAGATGAGCTAGAAAGTTGAAAACTGGACAGAAATGTGTGAAAGACAGTTGATTTTGGGAAGAAAGGTTTCTGAGAATTCGAAAAATTTGAATTCCAAAATATAGATTCAGATTTTTGGATTTTCAAAAAATTTTCAAATTTTCAGAAAACGCTAATGCTCTCCAAATATACTGTTTTTCACACAATTCTGTCTAAAAATCAACTTTCTAGGTCATCTCGAAGCCGAGATACAGCGATTTGACGTTTAGGAGGCTAGAGACGTCAGACGATGAGACACACTGCGTCTCTACCCTCATGAAACTTCAAATGACCATGTCTCGGTTTCTAGATGAGCTAGAATAGTGGTTTTTGGACAGAACTGCGTGCAATAGAGAGAAGTATTAGATTTTTGGGATTTTTCAATAATTTTTGGAATTTAGATATTGCTAGAAAGGTGATTTTTAAACGAATTTGTCATAAAAAATTTAGGCTATTTTCGGAAAACTTAATTTTATGGCTTTTTTTCAAAATTCCAATAATTTCAATGTTCTGATACATGATGACATTGAACATTGAATTTGGAACATTTCTGTTAAACTTTCATGAAACTTCAAATGACTGTATCTCGGCTCCTCGAACAACTAGAAACTTGTTTTTTTTGACAGCATTGAAAGGTCTTTTGGCTGTTTTAAGCTTTTTTTTGA</canonical>
            <polymorphic>GCGGTATCTCGGCACCTAGGAGAGCTAGAAAGCTTGTTTTGGGACAGAATTGAAAGTAATTTTAGCTGTGTCTCGATTCGAAAAAAATCTGACAATTTTAGAAAAATTTTGAATTTCGAAAAAAATTGAAAATGAGCAAAAGTGCTGAATATTTGTAAAATATCAAGAGAGCTCCAGTTTGGTACAAAGAGGACGTTTCAGGCCACCTAGAAGCCCAGATACAGCGGTTTAAAACTCAAATGGTTAGAGACGCAGTGTGTCTTGTCGTCTGGCGTCTCTAGCCTCCCGAAACTTCAAATGGCTATATCTCGGCTTCGAGATGAGCTAGAAAGTTGAAAACTGGACAGAAATGTGTGAAAGACAGTTGATTTTGGGAAGAAAGGTTTCTGAGAATTCGAAAAATTTGAATTCCAAAATATAGATTCAGATTTTTGGATTTTCAAAAAATTTTCAAATTTTCAGAAAACGCTAATGCTCTCCAAATATACTGTTTTTCACAMAATTCTGTCTAAAAATCAACTTTCTAGGTCATCTCGAAGCCGAGATACAGCGATTTGACGTTTAGGAGGCTAGAGACGTCAGACGATGAGACACACTGCGTCTCTACCCTCATGAAACTTCAAATGACCATGTCTCGGTTTCTAGATGAGCTAGAATAGTGGTTTTTGGACAGAACTGCGTGCAATAGAGAGAAGTATTAGATTTTTGGGATTTTTCAATAATTTTTGGAATTTAGATATTGCTAGAAAGGTGATTTTTAAACGAATTTGTCATAAAAAATTTAGGCTATTTTCGGAAAACTTAATTTTATGGCTTTTTTTCAAAATTCCAATAATTTCAATGTTCTGATACATGATGACATTGAACATTGAATTTGGAACATTTCTGTTAAACTTTCATGAAACTTCAAATGACTGTATCTCGGCTCCTCGAACAACTAGAAACTTGTTTTTTTTGACAGCATTGAAAGGTCTTTTGGCTGTTTTAAGCTTTTTTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>247 141 95 94 74 71 66 61 56 52 21 14 2 2 2 2</canonical_bands>
                <polymorphic_bands>247 141 96 95 74 71 66 61 56 52 21 14 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAATTCCAAAATATAGATTCAGA</pcr_primer_p1>
		<pcr_primer_p2>TCCCAAAAATCTAATACTTCTCTC</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>TGAATTCCAAAATATAGATTCAGATTTTTGGATTTTCAAAAAATTTTCAAATTTTCAGAAAACGCTAATGCTCTCCAAATATACTGTTTTTCACACAATTCTGTCTAAAAATCAACTTTCTAGGTCATCTCGAAGCCGAGATACAGCGATTTGACGTTTAGGAGGCTAGAGACGTCAGACGATGAGACACACTGCGTCTCTACCCTCATGAAACTTCAAATGACCATGTCTCGGTTTCTAGATGAGCTAGAATAGTGGTTTTTGGACAGAACTGCGTGCAATAGAGAGAAGTATTAGATTTTTGGGA</canonical_amplicon>
		<polymorphic_amplicon>TGAATTCCAAAATATAGATTCAGATTTTTGGATTTTCAAAAAATTTTCAAATTTTCAGAAAACGCTAATGCTCTCCAAATATACTGTTTTTCACAMAATTCTGTCTAAAAATCAACTTTCTAGGTCATCTCGAAGCCGAGATACAGCGATTTGACGTTTAGGAGGCTAGAGACGTCAGACGATGAGACACACTGCGTCTCTACCCTCATGAAACTTCAAATGACCATGTCTCGGTTTCTAGATGAGCTAGAATAGTGGTTTTTGGACAGAACTGCGTGCAATAGAGAGAAGTATTAGATTTTTGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27857</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>425962</contig_pos>
        <strand></strand>
        <context>aaatgaccat[G/A]tctcggtttc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GACGATGAGACACACTGCGTCTCTACCCTCATGAAACTTCAAATGACCAT</left_flank>
        <right_flank>TCTCGGTTTCTAGATGAGCTAGAATAGTGGTTTTTGGACAGAACTGCGTG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGCAAAAGTGCTGAATATTTGTAAAATATCAAGAGAGCTCCAGTTTGGTACAAAGAGGACGTTTCAGGCCACCTAGAAGCCCAGATACAGCGGTTTAAAACTCAAATGGTTAGAGACGCAGTGTGTCTTGTCGTCTGGCGTCTCTAGCCTCCCGAAACTTCAAATGGCTATATCTCGGCTTCGAGATGAGCTAGAAAGTTGAAAACTGGACAGAAATGTGTGAAAGACAGTTGATTTTGGGAAGAAAGGTTTCTGAGAATTCGAAAAATTTGAATTCCAAAATATAGATTCAGATTTTTGGATTTTCAAAAAATTTTCAAATTTTCAGAAAACGCTAATGCTCTCCAAATATACTGTTTTTCACACAATTCTGTCTAAAAATCAACTTTCTAGGTCATCTCGAAGCCGAGATACAGCGATTTGACGTTTAGGAGGCTAGAGACGTCAGACGATGAGACACACTGCGTCTCTACCCTCATGAAACTTCAAATGACCATGTCTCGGTTTCTAGATGAGCTAGAATAGTGGTTTTTGGACAGAACTGCGTGCAATAGAGAGAAGTATTAGATTTTTGGGATTTTTCAATAATTTTTGGAATTTAGATATTGCTAGAAAGGTGATTTTTAAACGAATTTGTCATAAAAAATTTAGGCTATTTTCGGAAAACTTAATTTTATGGCTTTTTTTCAAAATTCCAATAATTTCAATGTTCTGATACATGATGACATTGAACATTGAATTTGGAACATTTCTGTTAAACTTTCATGAAACTTCAAATGACTGTATCTCGGCTCCTCGAACAACTAGAAACTTGTTTTTTTTGACAGCATTGAAAGGTCTTTTGGCTGTTTTAAGCTTTTTTTTGATGGAGCATATTTTTTCAAAATTTAGTATTTTTGCTAATTAGAATTGCTGGAGAATCGCTCTGGAAATTTATGATAGTCGCGTAGCTTTGTTTGAGGTATTTTTTTCTGAAATTTTCAAATAATTTCCTCCTT</canonical>
            <polymorphic>TGAGCAAAAGTGCTGAATATTTGTAAAATATCAAGAGAGCTCCAGTTTGGTACAAAGAGGACGTTTCAGGCCACCTAGAAGCCCAGATACAGCGGTTTAAAACTCAAATGGTTAGAGACGCAGTGTGTCTTGTCGTCTGGCGTCTCTAGCCTCCCGAAACTTCAAATGGCTATATCTCGGCTTCGAGATGAGCTAGAAAGTTGAAAACTGGACAGAAATGTGTGAAAGACAGTTGATTTTGGGAAGAAAGGTTTCTGAGAATTCGAAAAATTTGAATTCCAAAATATAGATTCAGATTTTTGGATTTTCAAAAAATTTTCAAATTTTCAGAAAACGCTAATGCTCTCCAAATATACTGTTTTTCACACAATTCTGTCTAAAAATCAACTTTCTAGGTCATCTCGAAGCCGAGATACAGCGATTTGACGTTTAGGAGGCTAGAGACGTCAGACGATGAGACACACTGCGTCTCTACCCTCATGAAACTTCAAATGACCATRTCTCGGTTTCTAGATGAGCTAGAATAGTGGTTTTTGGACAGAACTGCGTGCAATAGAGAGAAGTATTAGATTTTTGGGATTTTTCAATAATTTTTGGAATTTAGATATTGCTAGAAAGGTGATTTTTAAACGAATTTGTCATAAAAAATTTAGGCTATTTTCGGAAAACTTAATTTTATGGCTTTTTTTCAAAATTCCAATAATTTCAATGTTCTGATACATGATGACATTGAACATTGAATTTGGAACATTTCTGTTAAACTTTCATGAAACTTCAAATGACTGTATCTCGGCTCCTCGAACAACTAGAAACTTGTTTTTTTTGACAGCATTGAAAGGTCTTTTGGCTGTTTTAAGCTTTTTTTTGATGGAGCATATTTTTTCAAAATTTAGTATTTTTGCTAATTAGAATTGCTGGAGAATCGCTCTGGAAATTTATGATAGTCGCGTAGCTTTGTTTGAGGTATTTTTTTCTGAAATTTTCAAATAATTTCCTCCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNGTC</site>
                <isoschizomers>
                    <enzyme>AspI</enzyme>
                    <enzyme>PflFI</enzyme>
                    <enzyme>PsyI</enzyme>
                    <enzyme>TelI</enzyme>
                    <enzyme>Tth111I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>479 234 223 46 18</canonical_bands>
                <polymorphic_bands>479 241 234 46</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCCAAATATACTGTTTTTCACA</pcr_primer_p1>
		<pcr_primer_p2>ATTATTGAAAAATCCCAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTCCAAATATACTGTTTTTCACACAATTCTGTCTAAAAATCAACTTTCTAGGTCATCTCGAAGCCGAGATACAGCGATTTGACGTTTAGGAGGCTAGAGACGTCAGACGATGAGACACACTGCGTCTCTACCCTCATGAAACTTCAAATGACCATGTCTCGGTTTCTAGATGAGCTAGAATAGTGGTTTTTGGACAGAACTGCGTGCAATAGAGAGAAGTATTAGATTTTTGGGATTTTTCAATAAT</canonical_amplicon>
		<polymorphic_amplicon>TCTCCAAATATACTGTTTTTCACACAATTCTGTCTAAAAATCAACTTTCTAGGTCATCTCGAAGCCGAGATACAGCGATTTGACGTTTAGGAGGCTAGAGACGTCAGACGATGAGACACACTGCGTCTCTACCCTCATGAAACTTCAAATGACCATRTCTCGGTTTCTAGATGAGCTAGAATAGTGGTTTTTGGACAGAACTGCGTGCAATAGAGAGAAGTATTAGATTTTTGGGATTTTTCAATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27858</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>433106</contig_pos>
        <strand></strand>
        <context>ttaactttaa[T/G]cttrtrtatc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AAGATACCGTATTTGCTCTAATAGAAGCCCACGCAAACCATTAACTTTAA</left_flank>
        <right_flank>CTTATGTATCTCGGTTACTGTAAGAGATATCAAAAATGTGTCAACTGATA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCACTCATCTATTATTATCTTTTCCTTTATCTCTTGCTTATCTTTTTGGGATTCTCGTCCTCTTGTTGAGAGACTGACTAAATGACCAATTCGTGCACTTTCAAGGATTGCTACGATTTTTGGATTTCTGATTGTTCAATTGCCCTAATTTCCTAAAATCTCTATAATCCTTGCCGCCATTTCTAGAGTTTTTTTTTGATTAAGTTATTTAGAATCCAGTTGATTTGAACAGTTTTGACGCATCCTTTTTTAGAAACTTAATAACTGATTCTTGCAGTCCTGGGTTACGGTAGCTTCCTGATCATTAACTTTGAGTCGATGTATCTCATTTCCTGTAAAAGATATAAAAAAGTGGTCAACTGATAAAACGTTAATCATGATATCAGCAATATTTTGTTAATTGACTACTTTTTGATATCACTTACAAAACATGAGATACGTGGGCTCGAAGATACCGTATTTGCTCTAATAGAAGCCCACGCAAACCATTAACTTTAATCTTATGTATCTCGGTTACTGTAAGAGATATCAAAAATGTGTCAACTGATAAAATGTTGATGATATTATGATAAACACTTTATCAGTTGACGACTTTTTGCTATCTCTCACACCACACGAATTGAGATTATTCAGCTCAACGTATGCGTGGGTTTCTGAAAAAAGGCATTTTTCAAATTTTTGGAGTCAGTTTGTAGGGGTTTCAAGATTCTACTACGATTTTCGCTGAATTATTCGTGTTTATTTTTTCTGGATTTTCTAGAAAATTCCGGTTTTCAAAACTTCCAATTAGAAAAGTTCTAGTTTAAGCTTTCTAGGATTCCATATTTTCAGACACCATACCATAAAACCTGTAATAGAAGGGACTCCAGAATCTTTACTTTCATCTAAATTATCTAGCTTCCTGTAAGTGATATCAAAAAGTTGTCAACTGATAAAATGTTGATCATAATCTCAAAAATATTTTATCAGTTTACACATTTTTGATATCTTTTACAGTAA</canonical>
            <polymorphic>ACCACTCATCTATTATTATCTTTTCCTTTATCTCTTGCTTATCTTTTTGGGATTCTCGTCCTCTTGTTGAGAGACTGACTAAATGACCAATTCGTGCACTTTCAAGGATTGCTACGATTTTTGGATTTCTGATTGTTCAATTGCCCTAATTTCCTAAAATCTCTATAATCCTTGCCGCCATTTCTAGAGTTTTTTTTTGATTAAGTTATTTAGAATCCAGTTGATTTGAACAGTTTTGACGCATCCTTTTTTAGAAACTTAATAACTGATTCTTGCAGTCCTGGGTTACGGTAGCTTCCTGATCATTAACTTTGAGTCGATGTATCTCATTTCCTGTAAAAGATATAAAAAAGTGGTCAACTGATAAAACGTTAATCATGATATCAGCAATATTTTGTTAATTGACTACTTTTTGATATCACTTACAAAACATGAGATACGTGGGCTCGAAGATACCGTATTTGCTCTAATAGAAGCCCACGCAAACCATTAACTTTAAKCTTATGTATCTCGGTTACTGTAAGAGATATCAAAAATGTGTCAACTGATAAAATGTTGATGATATTATGATAAACACTTTATCAGTTGACGACTTTTTGCTATCTCTCACACCACACGAATTGAGATTATTCAGCTCAACGTATGCGTGGGTTTCTGAAAAAAGGCATTTTTCAAATTTTTGGAGTCAGTTTGTAGGGGTTTCAAGATTCTACTACGATTTTCGCTGAATTATTCGTGTTTATTTTTTCTGGATTTTCTAGAAAATTCCGGTTTTCAAAACTTCCAATTAGAAAAGTTCTAGTTTAAGCTTTCTAGGATTCCATATTTTCAGACACCATACCATAAAACCTGTAATAGAAGGGACTCCAGAATCTTTACTTTCATCTAAATTATCTAGCTTCCTGTAAGTGATATCAAAAAGTTGTCAACTGATAAAATGTTGATCATAATCTCAAAAATATTTTATCAGTTTACACATTTTTGATATCTTTTACAGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTACGGTAGCTTCCTGAT</pcr_primer_p1>
		<pcr_primer_p2>GACTCCAAAAATTTGAAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>404</pcr_amplicon_size>
		<canonical_amplicon>GGTTACGGTAGCTTCCTGATCATTAACTTTGAGTCGATGTATCTCATTTCCTGTAAAAGATATAAAAAAGTGGTCAACTGATAAAACGTTAATCATGATATCAGCAATATTTTGTTAATTGACTACTTTTTGATATCACTTACAAAACATGAGATACGTGGGCTCGAAGATACCGTATTTGCTCTAATAGAAGCCCACGCAAACCATTAACTTTAATCTTATGTATCTCGGTTACTGTAAGAGATATCAAAAATGTGTCAACTGATAAAATGTTGATGATATTATGATAAACACTTTATCAGTTGACGACTTTTTGCTATCTCTCACACCACACGAATTGAGATTATTCAGCTCAACGTATGCGTGGGTTTCTGAAAAAAGGCATTTTTCAAATTTTTGGAGTC</canonical_amplicon>
		<polymorphic_amplicon>GGTTACGGTAGCTTCCTGATCATTAACTTTGAGTCGATGTATCTCATTTCCTGTAAAAGATATAAAAAAGTGGTCAACTGATAAAACGTTAATCATGATATCAGCAATATTTTGTTAATTGACTACTTTTTGATATCACTTACAAAACATGAGATACGTGGGCTCGAAGATACCGTATTTGCTCTAATAGAAGCCCACGCAAACCATTAACTTTAAKCTTATGTATCTCGGTTACTGTAAGAGATATCAAAAATGTGTCAACTGATAAAATGTTGATGATATTATGATAAACACTTTATCAGTTGACGACTTTTTGCTATCTCTCACACCACACGAATTGAGATTATTCAGCTCAACGTATGCGTGGGTTTCTGAAAAAAGGCATTTTTCAAATTTTTGGAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27859</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>433110</contig_pos>
        <strand></strand>
        <context>ctttaakctt[A/G]trtatctcgg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACCGTATTTGCTCTAATAGAAGCCCACGCAAACCATTAACTTTAATCTT</left_flank>
        <right_flank>TGTATCTCGGTTACTGTAAGAGATATCAAAAATGTGTCAACTGATAAAAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCATCTATTATTATCTTTTCCTTTATCTCTTGCTTATCTTTTTGGGATTCTCGTCCTCTTGTTGAGAGACTGACTAAATGACCAATTCGTGCACTTTCAAGGATTGCTACGATTTTTGGATTTCTGATTGTTCAATTGCCCTAATTTCCTAAAATCTCTATAATCCTTGCCGCCATTTCTAGAGTTTTTTTTTGATTAAGTTATTTAGAATCCAGTTGATTTGAACAGTTTTGACGCATCCTTTTTTAGAAACTTAATAACTGATTCTTGCAGTCCTGGGTTACGGTAGCTTCCTGATCATTAACTTTGAGTCGATGTATCTCATTTCCTGTAAAAGATATAAAAAAGTGGTCAACTGATAAAACGTTAATCATGATATCAGCAATATTTTGTTAATTGACTACTTTTTGATATCACTTACAAAACATGAGATACGTGGGCTCGAAGATACCGTATTTGCTCTAATAGAAGCCCACGCAAACCATTAACTTTAATCTTATGTATCTCGGTTACTGTAAGAGATATCAAAAATGTGTCAACTGATAAAATGTTGATGATATTATGATAAACACTTTATCAGTTGACGACTTTTTGCTATCTCTCACACCACACGAATTGAGATTATTCAGCTCAACGTATGCGTGGGTTTCTGAAAAAAGGCATTTTTCAAATTTTTGGAGTCAGTTTGTAGGGGTTTCAAGATTCTACTACGATTTTCGCTGAATTATTCGTGTTTATTTTTTCTGGATTTTCTAGAAAATTCCGGTTTTCAAAACTTCCAATTAGAAAAGTTCTAGTTTAAGCTTTCTAGGATTCCATATTTTCAGACACCATACCATAAAACCTGTAATAGAAGGGACTCCAGAATCTTTACTTTCATCTAAATTATCTAGCTTCCTGTAAGTGATATCAAAAAGTTGTCAACTGATAAAATGTTGATCATAATCTCAAAAATATTTTATCAGTTTACACATTTTTGATATCTTTTACAGTAACCGA</canonical>
            <polymorphic>CTCATCTATTATTATCTTTTCCTTTATCTCTTGCTTATCTTTTTGGGATTCTCGTCCTCTTGTTGAGAGACTGACTAAATGACCAATTCGTGCACTTTCAAGGATTGCTACGATTTTTGGATTTCTGATTGTTCAATTGCCCTAATTTCCTAAAATCTCTATAATCCTTGCCGCCATTTCTAGAGTTTTTTTTTGATTAAGTTATTTAGAATCCAGTTGATTTGAACAGTTTTGACGCATCCTTTTTTAGAAACTTAATAACTGATTCTTGCAGTCCTGGGTTACGGTAGCTTCCTGATCATTAACTTTGAGTCGATGTATCTCATTTCCTGTAAAAGATATAAAAAAGTGGTCAACTGATAAAACGTTAATCATGATATCAGCAATATTTTGTTAATTGACTACTTTTTGATATCACTTACAAAACATGAGATACGTGGGCTCGAAGATACCGTATTTGCTCTAATAGAAGCCCACGCAAACCATTAACTTTAATCTTRTGTATCTCGGTTACTGTAAGAGATATCAAAAATGTGTCAACTGATAAAATGTTGATGATATTATGATAAACACTTTATCAGTTGACGACTTTTTGCTATCTCTCACACCACACGAATTGAGATTATTCAGCTCAACGTATGCGTGGGTTTCTGAAAAAAGGCATTTTTCAAATTTTTGGAGTCAGTTTGTAGGGGTTTCAAGATTCTACTACGATTTTCGCTGAATTATTCGTGTTTATTTTTTCTGGATTTTCTAGAAAATTCCGGTTTTCAAAACTTCCAATTAGAAAAGTTCTAGTTTAAGCTTTCTAGGATTCCATATTTTCAGACACCATACCATAAAACCTGTAATAGAAGGGACTCCAGAATCTTTACTTTCATCTAAATTATCTAGCTTCCTGTAAGTGATATCAAAAAGTTGTCAACTGATAAAATGTTGATCATAATCTCAAAAATATTTTATCAGTTTACACATTTTTGATATCTTTTACAGTAACCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTACGGTAGCTTCCTGAT</pcr_primer_p1>
		<pcr_primer_p2>GACTCCAAAAATTTGAAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>404</pcr_amplicon_size>
		<canonical_amplicon>GGTTACGGTAGCTTCCTGATCATTAACTTTGAGTCGATGTATCTCATTTCCTGTAAAAGATATAAAAAAGTGGTCAACTGATAAAACGTTAATCATGATATCAGCAATATTTTGTTAATTGACTACTTTTTGATATCACTTACAAAACATGAGATACGTGGGCTCGAAGATACCGTATTTGCTCTAATAGAAGCCCACGCAAACCATTAACTTTAATCTTATGTATCTCGGTTACTGTAAGAGATATCAAAAATGTGTCAACTGATAAAATGTTGATGATATTATGATAAACACTTTATCAGTTGACGACTTTTTGCTATCTCTCACACCACACGAATTGAGATTATTCAGCTCAACGTATGCGTGGGTTTCTGAAAAAAGGCATTTTTCAAATTTTTGGAGTC</canonical_amplicon>
		<polymorphic_amplicon>GGTTACGGTAGCTTCCTGATCATTAACTTTGAGTCGATGTATCTCATTTCCTGTAAAAGATATAAAAAAGTGGTCAACTGATAAAACGTTAATCATGATATCAGCAATATTTTGTTAATTGACTACTTTTTGATATCACTTACAAAACATGAGATACGTGGGCTCGAAGATACCGTATTTGCTCTAATAGAAGCCCACGCAAACCATTAACTTTAATCTTRTGTATCTCGGTTACTGTAAGAGATATCAAAAATGTGTCAACTGATAAAATGTTGATGATATTATGATAAACACTTTATCAGTTGACGACTTTTTGCTATCTCTCACACCACACGAATTGAGATTATTCAGCTCAACGTATGCGTGGGTTTCTGAAAAAAGGCATTTTTCAAATTTTTGGAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27860</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>433112</contig_pos>
        <strand></strand>
        <context>ttaakcttrt[G/A]tatctcggtt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CCGTATTTGCTCTAATAGAAGCCCACGCAAACCATTAACTTTAATCTTAT</left_flank>
        <right_flank>TATCTCGGTTACTGTAAGAGATATCAAAAATGTGTCAACTGATAAAATGT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCTATTATTATCTTTTCCTTTATCTCTTGCTTATCTTTTTGGGATTCTCGTCCTCTTGTTGAGAGACTGACTAAATGACCAATTCGTGCACTTTCAAGGATTGCTACGATTTTTGGATTTCTGATTGTTCAATTGCCCTAATTTCCTAAAATCTCTATAATCCTTGCCGCCATTTCTAGAGTTTTTTTTTGATTAAGTTATTTAGAATCCAGTTGATTTGAACAGTTTTGACGCATCCTTTTTTAGAAACTTAATAACTGATTCTTGCAGTCCTGGGTTACGGTAGCTTCCTGATCATTAACTTTGAGTCGATGTATCTCATTTCCTGTAAAAGATATAAAAAAGTGGTCAACTGATAAAACGTTAATCATGATATCAGCAATATTTTGTTAATTGACTACTTTTTGATATCACTTACAAAACATGAGATACGTGGGCTCGAAGATACCGTATTTGCTCTAATAGAAGCCCACGCAAACCATTAACTTTAATCTTATGTATCTCGGTTACTGTAAGAGATATCAAAAATGTGTCAACTGATAAAATGTTGATGATATTATGATAAACACTTTATCAGTTGACGACTTTTTGCTATCTCTCACACCACACGAATTGAGATTATTCAGCTCAACGTATGCGTGGGTTTCTGAAAAAAGGCATTTTTCAAATTTTTGGAGTCAGTTTGTAGGGGTTTCAAGATTCTACTACGATTTTCGCTGAATTATTCGTGTTTATTTTTTCTGGATTTTCTAGAAAATTCCGGTTTTCAAAACTTCCAATTAGAAAAGTTCTAGTTTAAGCTTTCTAGGATTCCATATTTTCAGACACCATACCATAAAACCTGTAATAGAAGGGACTCCAGAATCTTTACTTTCATCTAAATTATCTAGCTTCCTGTAAGTGATATCAAAAAGTTGTCAACTGATAAAATGTTGATCATAATCTCAAAAATATTTTATCAGTTTACACATTTTTGATATCTTTTACAGTAACCGAGA</canonical>
            <polymorphic>CATCTATTATTATCTTTTCCTTTATCTCTTGCTTATCTTTTTGGGATTCTCGTCCTCTTGTTGAGAGACTGACTAAATGACCAATTCGTGCACTTTCAAGGATTGCTACGATTTTTGGATTTCTGATTGTTCAATTGCCCTAATTTCCTAAAATCTCTATAATCCTTGCCGCCATTTCTAGAGTTTTTTTTTGATTAAGTTATTTAGAATCCAGTTGATTTGAACAGTTTTGACGCATCCTTTTTTAGAAACTTAATAACTGATTCTTGCAGTCCTGGGTTACGGTAGCTTCCTGATCATTAACTTTGAGTCGATGTATCTCATTTCCTGTAAAAGATATAAAAAAGTGGTCAACTGATAAAACGTTAATCATGATATCAGCAATATTTTGTTAATTGACTACTTTTTGATATCACTTACAAAACATGAGATACGTGGGCTCGAAGATACCGTATTTGCTCTAATAGAAGCCCACGCAAACCATTAACTTTAATCTTATRTATCTCGGTTACTGTAAGAGATATCAAAAATGTGTCAACTGATAAAATGTTGATGATATTATGATAAACACTTTATCAGTTGACGACTTTTTGCTATCTCTCACACCACACGAATTGAGATTATTCAGCTCAACGTATGCGTGGGTTTCTGAAAAAAGGCATTTTTCAAATTTTTGGAGTCAGTTTGTAGGGGTTTCAAGATTCTACTACGATTTTCGCTGAATTATTCGTGTTTATTTTTTCTGGATTTTCTAGAAAATTCCGGTTTTCAAAACTTCCAATTAGAAAAGTTCTAGTTTAAGCTTTCTAGGATTCCATATTTTCAGACACCATACCATAAAACCTGTAATAGAAGGGACTCCAGAATCTTTACTTTCATCTAAATTATCTAGCTTCCTGTAAGTGATATCAAAAAGTTGTCAACTGATAAAATGTTGATCATAATCTCAAAAATATTTTATCAGTTTACACATTTTTGATATCTTTTACAGTAACCGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTACGGTAGCTTCCTGAT</pcr_primer_p1>
		<pcr_primer_p2>GACTCCAAAAATTTGAAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>404</pcr_amplicon_size>
		<canonical_amplicon>GGTTACGGTAGCTTCCTGATCATTAACTTTGAGTCGATGTATCTCATTTCCTGTAAAAGATATAAAAAAGTGGTCAACTGATAAAACGTTAATCATGATATCAGCAATATTTTGTTAATTGACTACTTTTTGATATCACTTACAAAACATGAGATACGTGGGCTCGAAGATACCGTATTTGCTCTAATAGAAGCCCACGCAAACCATTAACTTTAATCTTATGTATCTCGGTTACTGTAAGAGATATCAAAAATGTGTCAACTGATAAAATGTTGATGATATTATGATAAACACTTTATCAGTTGACGACTTTTTGCTATCTCTCACACCACACGAATTGAGATTATTCAGCTCAACGTATGCGTGGGTTTCTGAAAAAAGGCATTTTTCAAATTTTTGGAGTC</canonical_amplicon>
		<polymorphic_amplicon>GGTTACGGTAGCTTCCTGATCATTAACTTTGAGTCGATGTATCTCATTTCCTGTAAAAGATATAAAAAAGTGGTCAACTGATAAAACGTTAATCATGATATCAGCAATATTTTGTTAATTGACTACTTTTTGATATCACTTACAAAACATGAGATACGTGGGCTCGAAGATACCGTATTTGCTCTAATAGAAGCCCACGCAAACCATTAACTTTAATCTTATRTATCTCGGTTACTGTAAGAGATATCAAAAATGTGTCAACTGATAAAATGTTGATGATATTATGATAAACACTTTATCAGTTGACGACTTTTTGCTATCTCTCACACCACACGAATTGAGATTATTCAGCTCAACGTATGCGTGGGTTTCTGAAAAAAGGCATTTTTCAAATTTTTGGAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27861</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>433173</contig_pos>
        <strand></strand>
        <context>tgatgatatt[A/T]tgataaacac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTGTAAGAGATATCAAAAATGTGTCAACTGATAAAATGTTGATGATATT</left_flank>
        <right_flank>TGATAAACACTTTATCAGTTGACGACTTTTTGCTATCTCTCACACCACAC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGAGACTGACTAAATGACCAATTCGTGCACTTTCAAGGATTGCTACGATTTTTGGATTTCTGATTGTTCAATTGCCCTAATTTCCTAAAATCTCTATAATCCTTGCCGCCATTTCTAGAGTTTTTTTTTGATTAAGTTATTTAGAATCCAGTTGATTTGAACAGTTTTGACGCATCCTTTTTTAGAAACTTAATAACTGATTCTTGCAGTCCTGGGTTACGGTAGCTTCCTGATCATTAACTTTGAGTCGATGTATCTCATTTCCTGTAAAAGATATAAAAAAGTGGTCAACTGATAAAACGTTAATCATGATATCAGCAATATTTTGTTAATTGACTACTTTTTGATATCACTTACAAAACATGAGATACGTGGGCTCGAAGATACCGTATTTGCTCTAATAGAAGCCCACGCAAACCATTAACTTTAATCTTATGTATCTCGGTTACTGTAAGAGATATCAAAAATGTGTCAACTGATAAAATGTTGATGATATTATGATAAACACTTTATCAGTTGACGACTTTTTGCTATCTCTCACACCACACGAATTGAGATTATTCAGCTCAACGTATGCGTGGGTTTCTGAAAAAAGGCATTTTTCAAATTTTTGGAGTCAGTTTGTAGGGGTTTCAAGATTCTACTACGATTTTCGCTGAATTATTCGTGTTTATTTTTTCTGGATTTTCTAGAAAATTCCGGTTTTCAAAACTTCCAATTAGAAAAGTTCTAGTTTAAGCTTTCTAGGATTCCATATTTTCAGACACCATACCATAAAACCTGTAATAGAAGGGACTCCAGAATCTTTACTTTCATCTAAATTATCTAGCTTCCTGTAAGTGATATCAAAAAGTTGTCAACTGATAAAATGTTGATCATAATCTCAAAAATATTTTATCAGTTTACACATTTTTGATATCTTTTACAGTAACCGAGATATACAAGCTTAAAGTTAATGGTTCGCGTGGGCTTCTATTAGAGCAAATACGGTATCTTTG</canonical>
            <polymorphic>TGAGAGACTGACTAAATGACCAATTCGTGCACTTTCAAGGATTGCTACGATTTTTGGATTTCTGATTGTTCAATTGCCCTAATTTCCTAAAATCTCTATAATCCTTGCCGCCATTTCTAGAGTTTTTTTTTGATTAAGTTATTTAGAATCCAGTTGATTTGAACAGTTTTGACGCATCCTTTTTTAGAAACTTAATAACTGATTCTTGCAGTCCTGGGTTACGGTAGCTTCCTGATCATTAACTTTGAGTCGATGTATCTCATTTCCTGTAAAAGATATAAAAAAGTGGTCAACTGATAAAACGTTAATCATGATATCAGCAATATTTTGTTAATTGACTACTTTTTGATATCACTTACAAAACATGAGATACGTGGGCTCGAAGATACCGTATTTGCTCTAATAGAAGCCCACGCAAACCATTAACTTTAATCTTATGTATCTCGGTTACTGTAAGAGATATCAAAAATGTGTCAACTGATAAAATGTTGATGATATTWTGATAAACACTTTATCAGTTGACGACTTTTTGCTATCTCTCACACCACACGAATTGAGATTATTCAGCTCAACGTATGCGTGGGTTTCTGAAAAAAGGCATTTTTCAAATTTTTGGAGTCAGTTTGTAGGGGTTTCAAGATTCTACTACGATTTTCGCTGAATTATTCGTGTTTATTTTTTCTGGATTTTCTAGAAAATTCCGGTTTTCAAAACTTCCAATTAGAAAAGTTCTAGTTTAAGCTTTCTAGGATTCCATATTTTCAGACACCATACCATAAAACCTGTAATAGAAGGGACTCCAGAATCTTTACTTTCATCTAAATTATCTAGCTTCCTGTAAGTGATATCAAAAAGTTGTCAACTGATAAAATGTTGATCATAATCTCAAAAATATTTTATCAGTTTACACATTTTTGATATCTTTTACAGTAACCGAGATATACAAGCTTAAAGTTAATGGTTCGCGTGGGCTTCTATTAGAGCAAATACGGTATCTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTACGGTAGCTTCCTGAT</pcr_primer_p1>
		<pcr_primer_p2>GACTCCAAAAATTTGAAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>404</pcr_amplicon_size>
		<canonical_amplicon>GGTTACGGTAGCTTCCTGATCATTAACTTTGAGTCGATGTATCTCATTTCCTGTAAAAGATATAAAAAAGTGGTCAACTGATAAAACGTTAATCATGATATCAGCAATATTTTGTTAATTGACTACTTTTTGATATCACTTACAAAACATGAGATACGTGGGCTCGAAGATACCGTATTTGCTCTAATAGAAGCCCACGCAAACCATTAACTTTAATCTTATGTATCTCGGTTACTGTAAGAGATATCAAAAATGTGTCAACTGATAAAATGTTGATGATATTATGATAAACACTTTATCAGTTGACGACTTTTTGCTATCTCTCACACCACACGAATTGAGATTATTCAGCTCAACGTATGCGTGGGTTTCTGAAAAAAGGCATTTTTCAAATTTTTGGAGTC</canonical_amplicon>
		<polymorphic_amplicon>GGTTACGGTAGCTTCCTGATCATTAACTTTGAGTCGATGTATCTCATTTCCTGTAAAAGATATAAAAAAGTGGTCAACTGATAAAACGTTAATCATGATATCAGCAATATTTTGTTAATTGACTACTTTTTGATATCACTTACAAAACATGAGATACGTGGGCTCGAAGATACCGTATTTGCTCTAATAGAAGCCCACGCAAACCATTAACTTTAATCTTATGTATCTCGGTTACTGTAAGAGATATCAAAAATGTGTCAACTGATAAAATGTTGATGATATTWTGATAAACACTTTATCAGTTGACGACTTTTTGCTATCTCTCACACCACACGAATTGAGATTATTCAGCTCAACGTATGCGTGGGTTTCTGAAAAAAGGCATTTTTCAAATTTTTGGAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27862</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>435589</contig_pos>
        <strand></strand>
        <context>aagctttgaa[T/G]agacgcagac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ACTTCTCTAGCTATTCTAGAAGCCAAGATATACCTTTTTGAAGCTTTGAA</left_flank>
        <right_flank>AGACGCAGACAGTTAGAGTGTCTCGTTGTCTGCGTCTCTACCTTCTGAAT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATATTATTAGGTACGGCAAAAATTTTACGTAGTTTTGTCAAAAAAGGACTCAAATTGGACGGCTACAAGCCGAGTTACAGCCGTTTGAAGTTTCGGGAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAACCTAATGAAACTTCAAATGACCATGTCTCGGTTTCTAGATGAGCTAGAATAGTGGTTTTTGAACAGAACTGCGTGCAATAGAGAGAGGCTTCTAGAAAAGCTAGGAACATGGTTTTTTGACAGTATTAAGCAAGATTCAATTGCTTTTTAGAATGGACCGAAAAGTTAGATTTAGAGTGTGAAAATTTTACCAAAAAATTTATTTCTATAATTTTCTAAATTTTAATCAAAACTTGGTTTTTTCCCAAACGGGGAATTTTTAGTTTTTCTGAAAATACATTTCATTTTCTACAAATTCGTTCAGAAGTCACTTCTCTAGCTATTCTAGAAGCCAAGATATACCTTTTTGAAGCTTTGAATAGACGCAGACAGTTAGAGTGTCTCGTTGTCTGCGTCTCTACCTTCTGAATTTACTCTAAATTTGTTACTCATAGCATTCTACACATTCCTGTCTAAATTTGAGGTTTCTGGCTATTCTAGGAGTCGAGATACGACCATATAAATTTTCGGAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAATCTTCAAATGGCTGTATCTGGGCTTCTTGAACTGCTAGAAATTTGATCTTTTTACACAATTAAAGGTTTTCATTATAATTTTCTGATTATTCAAAAACATTTTCAAATTTTCGATTTTCAGCTCAACAGGAACGTGTCAACCGCAATGCAGAAGCGCTGTTTTGAACGTGTATCAAAATAAGCTCGGCCGAGTTCTTCTCCGTTCCGATGCCACGTGTATTCCGGGACGAGACGAGTTGAGGACCTGTAATTTCCTGCCAGCCGAGTCTACAGTACACTGTAGTCTGGGAAAGCTGGCGTGTGAAGGAG</canonical>
            <polymorphic>TTATATTATTAGGTACGGCAAAAATTTTACGTAGTTTTGTCAAAAAAGGACTCAAATTGGACGGCTACAAGCCGAGTTACAGCCGTTTGAAGTTTCGGGAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAACCTAATGAAACTTCAAATGACCATGTCTCGGTTTCTAGATGAGCTAGAATAGTGGTTTTTGAACAGAACTGCGTGCAATAGAGAGAGGCTTCTAGAAAAGCTAGGAACATGGTTTTTTGACAGTATTAAGCAAGATTCAATTGCTTTTTAGAATGGACCGAAAAGTTAGATTTAGAGTGTGAAAATTTTACCAAAAAATTTATTTCTATAATTTTCTAAATTTTAATCAAAACTTGGTTTTTTCCCAAACGGGGAATTTTTAGTTTTTCTGAAAATACATTTCATTTTCTACAAATTCGTTCAGAAGTCACTTCTCTAGCTATTCTAGAAGCCAAGATATACCTTTTTGAAGCTTTGAAKAGACGCAGACAGTTAGAGTGTCTCGTTGTCTGCGTCTCTACCTTCTGAATTTACTCTAAATTTGTTACTCATAGCATTCTACACATTCCTGTCTAAATTTGAGGTTTCTGGCTATTCTAGGAGTCGAGATACGACCATATAAATTTTCGGAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAATCTTCAAATGGCTGTATCTGGGCTTCTTGAACTGCTAGAAATTTGATCTTTTTACACAATTAAAGGTTTTCATTATAATTTTCTGATTATTCAAAAACATTTTCAAATTTTCGATTTTCAGCTCAACAGGAACGTGTCAACCGCAATGCAGAAGCGCTGTTTTGAACGTGTATCAAAATAAGCTCGGCCGAGTTCTTCTCCGTTCCGATGCCACGTGTATTCCGGGACGAGACGAGTTGAGGACCTGTAATTTCCTGCCAGCCGAGTCTACAGTACACTGTAGTCTGGGAAAGCTGGCGTGTGAAGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACGGGGAATTTTTAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGTGTAGAATGCTATGAGTAACAA</pcr_primer_p2>
		<pcr_amplicon_size>199</pcr_amplicon_size>
		<canonical_amplicon>AAACGGGGAATTTTTAGTTTTTCTGAAAATACATTTCATTTTCTACAAATTCGTTCAGAAGTCACTTCTCTAGCTATTCTAGAAGCCAAGATATACCTTTTTGAAGCTTTGAATAGACGCAGACAGTTAGAGTGTCTCGTTGTCTGCGTCTCTACCTTCTGAATTTACTCTAAATTTGTTACTCATAGCATTCTACACA</canonical_amplicon>
		<polymorphic_amplicon>AAACGGGGAATTTTTAGTTTTTCTGAAAATACATTTCATTTTCTACAAATTCGTTCAGAAGTCACTTCTCTAGCTATTCTAGAAGCCAAGATATACCTTTTTGAAGCTTTGAAKAGACGCAGACAGTTAGAGTGTCTCGTTGTCTGCGTCTCTACCTTCTGAATTTACTCTAAATTTGTTACTCATAGCATTCTACACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27863</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>435613</contig_pos>
        <strand></strand>
        <context>tagagtgtct[C/T]gttgtctgcg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGATATACCTTTTTGAAGCTTTGAATAGACGCAGACAGTTAGAGTGTCT</left_flank>
        <right_flank>GTTGTCTGCGTCTCTACCTTCTGAATTTACTCTAAATTTGTTACTCATAG</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTACGTAGTTTTGTCAAAAAAGGACTCAAATTGGACGGCTACAAGCCGAGTTACAGCCGTTTGAAGTTTCGGGAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAACCTAATGAAACTTCAAATGACCATGTCTCGGTTTCTAGATGAGCTAGAATAGTGGTTTTTGAACAGAACTGCGTGCAATAGAGAGAGGCTTCTAGAAAAGCTAGGAACATGGTTTTTTGACAGTATTAAGCAAGATTCAATTGCTTTTTAGAATGGACCGAAAAGTTAGATTTAGAGTGTGAAAATTTTACCAAAAAATTTATTTCTATAATTTTCTAAATTTTAATCAAAACTTGGTTTTTTCCCAAACGGGGAATTTTTAGTTTTTCTGAAAATACATTTCATTTTCTACAAATTCGTTCAGAAGTCACTTCTCTAGCTATTCTAGAAGCCAAGATATACCTTTTTGAAGCTTTGAATAGACGCAGACAGTTAGAGTGTCTCGTTGTCTGCGTCTCTACCTTCTGAATTTACTCTAAATTTGTTACTCATAGCATTCTACACATTCCTGTCTAAATTTGAGGTTTCTGGCTATTCTAGGAGTCGAGATACGACCATATAAATTTTCGGAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAATCTTCAAATGGCTGTATCTGGGCTTCTTGAACTGCTAGAAATTTGATCTTTTTACACAATTAAAGGTTTTCATTATAATTTTCTGATTATTCAAAAACATTTTCAAATTTTCGATTTTCAGCTCAACAGGAACGTGTCAACCGCAATGCAGAAGCGCTGTTTTGAACGTGTATCAAAATAAGCTCGGCCGAGTTCTTCTCCGTTCCGATGCCACGTGTATTCCGGGACGAGACGAGTTGAGGACCTGTAATTTCCTGCCAGCCGAGTCTACAGTACACTGTAGTCTGGGAAAGCTGGCGTGTGAAGGAGATTTGCAGTGCAATTCGAAGTTCG</canonical>
            <polymorphic>TTTTACGTAGTTTTGTCAAAAAAGGACTCAAATTGGACGGCTACAAGCCGAGTTACAGCCGTTTGAAGTTTCGGGAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAACCTAATGAAACTTCAAATGACCATGTCTCGGTTTCTAGATGAGCTAGAATAGTGGTTTTTGAACAGAACTGCGTGCAATAGAGAGAGGCTTCTAGAAAAGCTAGGAACATGGTTTTTTGACAGTATTAAGCAAGATTCAATTGCTTTTTAGAATGGACCGAAAAGTTAGATTTAGAGTGTGAAAATTTTACCAAAAAATTTATTTCTATAATTTTCTAAATTTTAATCAAAACTTGGTTTTTTCCCAAACGGGGAATTTTTAGTTTTTCTGAAAATACATTTCATTTTCTACAAATTCGTTCAGAAGTCACTTCTCTAGCTATTCTAGAAGCCAAGATATACCTTTTTGAAGCTTTGAATAGACGCAGACAGTTAGAGTGTCTYGTTGTCTGCGTCTCTACCTTCTGAATTTACTCTAAATTTGTTACTCATAGCATTCTACACATTCCTGTCTAAATTTGAGGTTTCTGGCTATTCTAGGAGTCGAGATACGACCATATAAATTTTCGGAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAATCTTCAAATGGCTGTATCTGGGCTTCTTGAACTGCTAGAAATTTGATCTTTTTACACAATTAAAGGTTTTCATTATAATTTTCTGATTATTCAAAAACATTTTCAAATTTTCGATTTTCAGCTCAACAGGAACGTGTCAACCGCAATGCAGAAGCGCTGTTTTGAACGTGTATCAAAATAAGCTCGGCCGAGTTCTTCTCCGTTCCGATGCCACGTGTATTCCGGGACGAGACGAGTTGAGGACCTGTAATTTCCTGCCAGCCGAGTCTACAGTACACTGTAGTCTGGGAAAGCTGGCGTGTGAAGGAGATTTGCAGTGCAATTCGAAGTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACGGGGAATTTTTAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGTGTAGAATGCTATGAGTAACAA</pcr_primer_p2>
		<pcr_amplicon_size>199</pcr_amplicon_size>
		<canonical_amplicon>AAACGGGGAATTTTTAGTTTTTCTGAAAATACATTTCATTTTCTACAAATTCGTTCAGAAGTCACTTCTCTAGCTATTCTAGAAGCCAAGATATACCTTTTTGAAGCTTTGAATAGACGCAGACAGTTAGAGTGTCTCGTTGTCTGCGTCTCTACCTTCTGAATTTACTCTAAATTTGTTACTCATAGCATTCTACACA</canonical_amplicon>
		<polymorphic_amplicon>AAACGGGGAATTTTTAGTTTTTCTGAAAATACATTTCATTTTCTACAAATTCGTTCAGAAGTCACTTCTCTAGCTATTCTAGAAGCCAAGATATACCTTTTTGAAGCTTTGAATAGACGCAGACAGTTAGAGTGTCTYGTTGTCTGCGTCTCTACCTTCTGAATTTACTCTAAATTTGTTACTCATAGCATTCTACACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27864</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>435701</contig_pos>
        <strand>+</strand>
        <context>aggtttctgg[A/C]twttctagga</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGTTACTCATAGCATTCTACACATTCCTGTCTAAATTTGAGGTTTCTGG</left_flank>
        <right_flank>TATTCTAGGAGTCGAGATACGACCATATAAATTTTCGGAGGCTAGAGACG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGACGACGAGACACACTGCGTCTCTAACCTAATGAAACTTCAAATGACCATGTCTCGGTTTCTAGATGAGCTAGAATAGTGGTTTTTGAACAGAACTGCGTGCAATAGAGAGAGGCTTCTAGAAAAGCTAGGAACATGGTTTTTTGACAGTATTAAGCAAGATTCAATTGCTTTTTAGAATGGACCGAAAAGTTAGATTTAGAGTGTGAAAATTTTACCAAAAAATTTATTTCTATAATTTTCTAAATTTTAATCAAAACTTGGTTTTTTCCCAAACGGGGAATTTTTAGTTTTTCTGAAAATACATTTCATTTTCTACAAATTCGTTCAGAAGTCACTTCTCTAGCTATTCTAGAAGCCAAGATATACCTTTTTGAAGCTTTGAATAGACGCAGACAGTTAGAGTGTCTCGTTGTCTGCGTCTCTACCTTCTGAATTTACTCTAAATTTGTTACTCATAGCATTCTACACATTCCTGTCTAAATTTGAGGTTTCTGGCTATTCTAGGAGTCGAGATACGACCATATAAATTTTCGGAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAATCTTCAAATGGCTGTATCTGGGCTTCTTGAACTGCTAGAAATTTGATCTTTTTACACAATTAAAGGTTTTCATTATAATTTTCTGATTATTCAAAAACATTTTCAAATTTTCGATTTTCAGCTCAACAGGAACGTGTCAACCGCAATGCAGAAGCGCTGTTTTGAACGTGTATCAAAATAAGCTCGGCCGAGTTCTTCTCCGTTCCGATGCCACGTGTATTCCGGGACGAGACGAGTTGAGGACCTGTAATTTCCTGCCAGCCGAGTCTACAGTACACTGTAGTCTGGGAAAGCTGGCGTGTGAAGGAGATTTGCAGTGCAATTCGAAGTTCGGCGTTTTCATGAGCGAGTGTGAAGCTGATGCGGCAAGAGGTGAGAAGGAGGATTACTGTAGAATTTGGTGCTATTTGAAGCATCTGAA</canonical>
            <polymorphic>CAGACGACGAGACACACTGCGTCTCTAACCTAATGAAACTTCAAATGACCATGTCTCGGTTTCTAGATGAGCTAGAATAGTGGTTTTTGAACAGAACTGCGTGCAATAGAGAGAGGCTTCTAGAAAAGCTAGGAACATGGTTTTTTGACAGTATTAAGCAAGATTCAATTGCTTTTTAGAATGGACCGAAAAGTTAGATTTAGAGTGTGAAAATTTTACCAAAAAATTTATTTCTATAATTTTCTAAATTTTAATCAAAACTTGGTTTTTTCCCAAACGGGGAATTTTTAGTTTTTCTGAAAATACATTTCATTTTCTACAAATTCGTTCAGAAGTCACTTCTCTAGCTATTCTAGAAGCCAAGATATACCTTTTTGAAGCTTTGAATAGACGCAGACAGTTAGAGTGTCTCGTTGTCTGCGTCTCTACCTTCTGAATTTACTCTAAATTTGTTACTCATAGCATTCTACACATTCCTGTCTAAATTTGAGGTTTCTGGMTATTCTAGGAGTCGAGATACGACCATATAAATTTTCGGAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAATCTTCAAATGGCTGTATCTGGGCTTCTTGAACTGCTAGAAATTTGATCTTTTTACACAATTAAAGGTTTTCATTATAATTTTCTGATTATTCAAAAACATTTTCAAATTTTCGATTTTCAGCTCAACAGGAACGTGTCAACCGCAATGCAGAAGCGCTGTTTTGAACGTGTATCAAAATAAGCTCGGCCGAGTTCTTCTCCGTTCCGATGCCACGTGTATTCCGGGACGAGACGAGTTGAGGACCTGTAATTTCCTGCCAGCCGAGTCTACAGTACACTGTAGTCTGGGAAAGCTGGCGTGTGAAGGAGATTTGCAGTGCAATTCGAAGTTCGGCGTTTTCATGAGCGAGTGTGAAGCTGATGCGGCAAGAGGTGAGAAGGAGGATTACTGTAGAATTTGGTGCTATTTGAAGCATCTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>219 119 99 74 71 64 64 61 49 45 42 32 21 12 12 11 5</canonical_bands>
                <polymorphic_bands>219 161 99 74 71 64 64 61 49 45 32 21 12 12 11 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTAAATTTGTTACTCATAGCATTC</pcr_primer_p1>
		<pcr_primer_p2>TTGAGCTGAAAATCGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>CTCTAAATTTGTTACTCATAGCATTCTACACATTCCTGTCTAAATTTGAGGTTTCTGGCTATTCTAGGAGTCGAGATACGACCATATAAATTTTCGGAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAATCTTCAAATGGCTGTATCTGGGCTTCTTGAACTGCTAGAAATTTGATCTTTTTACACAATTAAAGGTTTTCATTATAATTTTCTGATTATTCAAAAACATTTTCAAATTTTCGATTTTCAGCTCAA</canonical_amplicon>
		<polymorphic_amplicon>CTCTAAATTTGTTACTCATAGCATTCTACACATTCCTGTCTAAATTTGAGGTTTCTGGMTATTCTAGGAGTCGAGATACGACCATATAAATTTTCGGAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAATCTTCAAATGGCTGTATCTGGGCTTCTTGAACTGCTAGAAATTTGATCTTTTTACACAATTAAAGGTTTTCATTATAATTTTCTGATTATTCAAAAACATTTTCAAATTTTCGATTTTCAGCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27865</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>435703</contig_pos>
        <strand>+</strand>
        <context>gtttctggmt[A/T]ttctaggagy</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTACTCATAGCATTCTACACATTCCTGTCTAAATTTGAGGTTTCTGGCT</left_flank>
        <right_flank>TTCTAGGAGTCGAGATACGACCATATAAATTTTCGGAGGCTAGAGACGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGACGAGACACACTGCGTCTCTAACCTAATGAAACTTCAAATGACCATGTCTCGGTTTCTAGATGAGCTAGAATAGTGGTTTTTGAACAGAACTGCGTGCAATAGAGAGAGGCTTCTAGAAAAGCTAGGAACATGGTTTTTTGACAGTATTAAGCAAGATTCAATTGCTTTTTAGAATGGACCGAAAAGTTAGATTTAGAGTGTGAAAATTTTACCAAAAAATTTATTTCTATAATTTTCTAAATTTTAATCAAAACTTGGTTTTTTCCCAAACGGGGAATTTTTAGTTTTTCTGAAAATACATTTCATTTTCTACAAATTCGTTCAGAAGTCACTTCTCTAGCTATTCTAGAAGCCAAGATATACCTTTTTGAAGCTTTGAATAGACGCAGACAGTTAGAGTGTCTCGTTGTCTGCGTCTCTACCTTCTGAATTTACTCTAAATTTGTTACTCATAGCATTCTACACATTCCTGTCTAAATTTGAGGTTTCTGGCTATTCTAGGAGTCGAGATACGACCATATAAATTTTCGGAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAATCTTCAAATGGCTGTATCTGGGCTTCTTGAACTGCTAGAAATTTGATCTTTTTACACAATTAAAGGTTTTCATTATAATTTTCTGATTATTCAAAAACATTTTCAAATTTTCGATTTTCAGCTCAACAGGAACGTGTCAACCGCAATGCAGAAGCGCTGTTTTGAACGTGTATCAAAATAAGCTCGGCCGAGTTCTTCTCCGTTCCGATGCCACGTGTATTCCGGGACGAGACGAGTTGAGGACCTGTAATTTCCTGCCAGCCGAGTCTACAGTACACTGTAGTCTGGGAAAGCTGGCGTGTGAAGGAGATTTGCAGTGCAATTCGAAGTTCGGCGTTTTCATGAGCGAGTGTGAAGCTGATGCGGCAAGAGGTGAGAAGGAGGATTACTGTAGAATTTGGTGCTATTTGAAGCATCTGAAAT</canonical>
            <polymorphic>GACGACGAGACACACTGCGTCTCTAACCTAATGAAACTTCAAATGACCATGTCTCGGTTTCTAGATGAGCTAGAATAGTGGTTTTTGAACAGAACTGCGTGCAATAGAGAGAGGCTTCTAGAAAAGCTAGGAACATGGTTTTTTGACAGTATTAAGCAAGATTCAATTGCTTTTTAGAATGGACCGAAAAGTTAGATTTAGAGTGTGAAAATTTTACCAAAAAATTTATTTCTATAATTTTCTAAATTTTAATCAAAACTTGGTTTTTTCCCAAACGGGGAATTTTTAGTTTTTCTGAAAATACATTTCATTTTCTACAAATTCGTTCAGAAGTCACTTCTCTAGCTATTCTAGAAGCCAAGATATACCTTTTTGAAGCTTTGAATAGACGCAGACAGTTAGAGTGTCTCGTTGTCTGCGTCTCTACCTTCTGAATTTACTCTAAATTTGTTACTCATAGCATTCTACACATTCCTGTCTAAATTTGAGGTTTCTGGCTWTTCTAGGAGTCGAGATACGACCATATAAATTTTCGGAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAATCTTCAAATGGCTGTATCTGGGCTTCTTGAACTGCTAGAAATTTGATCTTTTTACACAATTAAAGGTTTTCATTATAATTTTCTGATTATTCAAAAACATTTTCAAATTTTCGATTTTCAGCTCAACAGGAACGTGTCAACCGCAATGCAGAAGCGCTGTTTTGAACGTGTATCAAAATAAGCTCGGCCGAGTTCTTCTCCGTTCCGATGCCACGTGTATTCCGGGACGAGACGAGTTGAGGACCTGTAATTTCCTGCCAGCCGAGTCTACAGTACACTGTAGTCTGGGAAAGCTGGCGTGTGAAGGAGATTTGCAGTGCAATTCGAAGTTCGGCGTTTTCATGAGCGAGTGTGAAGCTGATGCGGCAAGAGGTGAGAAGGAGGATTACTGTAGAATTTGGTGCTATTTGAAGCATCTGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTGTTACTCATAGCATTCTACA</pcr_primer_p1>
		<pcr_primer_p2>TTGAGCTGAAAATCGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>AATTTGTTACTCATAGCATTCTACACATTCCTGTCTAAATTTGAGGTTTCTGGCTATTCTAGGAGTCGAGATACGACCATATAAATTTTCGGAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAATCTTCAAATGGCTGTATCTGGGCTTCTTGAACTGCTAGAAATTTGATCTTTTTACACAATTAAAGGTTTTCATTATAATTTTCTGATTATTCAAAAACATTTTCAAATTTTCGATTTTCAGCTCAA</canonical_amplicon>
		<polymorphic_amplicon>AATTTGTTACTCATAGCATTCTACACATTCCTGTCTAAATTTGAGGTTTCTGGCTWTTCTAGGAGTCGAGATACGACCATATAAATTTTCGGAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAATCTTCAAATGGCTGTATCTGGGCTTCTTGAACTGCTAGAAATTTGATCTTTTTACACAATTAAAGGTTTTCATTATAATTTTCTGATTATTCAAAAACATTTTCAAATTTTCGATTTTCAGCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27866</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>435713</contig_pos>
        <strand></strand>
        <context>wttctaggag[T/C]cgagatacga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCATTCTACACATTCCTGTCTAAATTTGAGGTTTCTGGCTATTCTAGGAG</left_flank>
        <right_flank>CGAGATACGACCATATAAATTTTCGGAGGCTAGAGACGCCAGACGACGAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACACTGCGTCTCTAACCTAATGAAACTTCAAATGACCATGTCTCGGTTTCTAGATGAGCTAGAATAGTGGTTTTTGAACAGAACTGCGTGCAATAGAGAGAGGCTTCTAGAAAAGCTAGGAACATGGTTTTTTGACAGTATTAAGCAAGATTCAATTGCTTTTTAGAATGGACCGAAAAGTTAGATTTAGAGTGTGAAAATTTTACCAAAAAATTTATTTCTATAATTTTCTAAATTTTAATCAAAACTTGGTTTTTTCCCAAACGGGGAATTTTTAGTTTTTCTGAAAATACATTTCATTTTCTACAAATTCGTTCAGAAGTCACTTCTCTAGCTATTCTAGAAGCCAAGATATACCTTTTTGAAGCTTTGAATAGACGCAGACAGTTAGAGTGTCTCGTTGTCTGCGTCTCTACCTTCTGAATTTACTCTAAATTTGTTACTCATAGCATTCTACACATTCCTGTCTAAATTTGAGGTTTCTGGCTATTCTAGGAGTCGAGATACGACCATATAAATTTTCGGAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAATCTTCAAATGGCTGTATCTGGGCTTCTTGAACTGCTAGAAATTTGATCTTTTTACACAATTAAAGGTTTTCATTATAATTTTCTGATTATTCAAAAACATTTTCAAATTTTCGATTTTCAGCTCAACAGGAACGTGTCAACCGCAATGCAGAAGCGCTGTTTTGAACGTGTATCAAAATAAGCTCGGCCGAGTTCTTCTCCGTTCCGATGCCACGTGTATTCCGGGACGAGACGAGTTGAGGACCTGTAATTTCCTGCCAGCCGAGTCTACAGTACACTGTAGTCTGGGAAAGCTGGCGTGTGAAGGAGATTTGCAGTGCAATTCGAAGTTCGGCGTTTTCATGAGCGAGTGTGAAGCTGATGCGGCAAGAGGTGAGAAGGAGGATTACTGTAGAATTTGGTGCTATTTGAAGCATCTGAAATGTTTGAGCTG</canonical>
            <polymorphic>CACACTGCGTCTCTAACCTAATGAAACTTCAAATGACCATGTCTCGGTTTCTAGATGAGCTAGAATAGTGGTTTTTGAACAGAACTGCGTGCAATAGAGAGAGGCTTCTAGAAAAGCTAGGAACATGGTTTTTTGACAGTATTAAGCAAGATTCAATTGCTTTTTAGAATGGACCGAAAAGTTAGATTTAGAGTGTGAAAATTTTACCAAAAAATTTATTTCTATAATTTTCTAAATTTTAATCAAAACTTGGTTTTTTCCCAAACGGGGAATTTTTAGTTTTTCTGAAAATACATTTCATTTTCTACAAATTCGTTCAGAAGTCACTTCTCTAGCTATTCTAGAAGCCAAGATATACCTTTTTGAAGCTTTGAATAGACGCAGACAGTTAGAGTGTCTCGTTGTCTGCGTCTCTACCTTCTGAATTTACTCTAAATTTGTTACTCATAGCATTCTACACATTCCTGTCTAAATTTGAGGTTTCTGGCTATTCTAGGAGYCGAGATACGACCATATAAATTTTCGGAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAATCTTCAAATGGCTGTATCTGGGCTTCTTGAACTGCTAGAAATTTGATCTTTTTACACAATTAAAGGTTTTCATTATAATTTTCTGATTATTCAAAAACATTTTCAAATTTTCGATTTTCAGCTCAACAGGAACGTGTCAACCGCAATGCAGAAGCGCTGTTTTGAACGTGTATCAAAATAAGCTCGGCCGAGTTCTTCTCCGTTCCGATGCCACGTGTATTCCGGGACGAGACGAGTTGAGGACCTGTAATTTCCTGCCAGCCGAGTCTACAGTACACTGTAGTCTGGGAAAGCTGGCGTGTGAAGGAGATTTGCAGTGCAATTCGAAGTTCGGCGTTTTCATGAGCGAGTGTGAAGCTGATGCGGCAAGAGGTGAGAAGGAGGATTACTGTAGAATTTGGTGCTATTTGAAGCATCTGAAATGTTTGAGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 213 178 108</canonical_bands>
                <polymorphic_bands>679 213 108</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>347 334 169 150</canonical_bands>
                <polymorphic_bands>681 169 150</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>315 233 160 92 92 57 51</canonical_bands>
                <polymorphic_bands>315 252 233 92 57 51</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTACTCATAGCATTCTACACATT</pcr_primer_p1>
		<pcr_primer_p2>TTGAGCTGAAAATCGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TGTTACTCATAGCATTCTACACATTCCTGTCTAAATTTGAGGTTTCTGGCTATTCTAGGAGTCGAGATACGACCATATAAATTTTCGGAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAATCTTCAAATGGCTGTATCTGGGCTTCTTGAACTGCTAGAAATTTGATCTTTTTACACAATTAAAGGTTTTCATTATAATTTTCTGATTATTCAAAAACATTTTCAAATTTTCGATTTTCAGCTCAA</canonical_amplicon>
		<polymorphic_amplicon>TGTTACTCATAGCATTCTACACATTCCTGTCTAAATTTGAGGTTTCTGGCTATTCTAGGAGYCGAGATACGACCATATAAATTTTCGGAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAATCTTCAAATGGCTGTATCTGGGCTTCTTGAACTGCTAGAAATTTGATCTTTTTACACAATTAAAGGTTTTCATTATAATTTTCTGATTATTCAAAAACATTTTCAAATTTTCGATTTTCAGCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27867</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>435759</contig_pos>
        <strand></strand>
        <context>acgccagacg[A/G]cgagacacac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAGTCGAGATACGACCATATAAATTTTCGGAGGCTAGAGACGCCAGACG</left_flank>
        <right_flank>CGAGACACACTGCGTCTCTAATCTTCAAATGGCTGTATCTGGGCTTCTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTCTAGATGAGCTAGAATAGTGGTTTTTGAACAGAACTGCGTGCAATAGAGAGAGGCTTCTAGAAAAGCTAGGAACATGGTTTTTTGACAGTATTAAGCAAGATTCAATTGCTTTTTAGAATGGACCGAAAAGTTAGATTTAGAGTGTGAAAATTTTACCAAAAAATTTATTTCTATAATTTTCTAAATTTTAATCAAAACTTGGTTTTTTCCCAAACGGGGAATTTTTAGTTTTTCTGAAAATACATTTCATTTTCTACAAATTCGTTCAGAAGTCACTTCTCTAGCTATTCTAGAAGCCAAGATATACCTTTTTGAAGCTTTGAATAGACGCAGACAGTTAGAGTGTCTCGTTGTCTGCGTCTCTACCTTCTGAATTTACTCTAAATTTGTTACTCATAGCATTCTACACATTCCTGTCTAAATTTGAGGTTTCTGGCTATTCTAGGAGTCGAGATACGACCATATAAATTTTCGGAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAATCTTCAAATGGCTGTATCTGGGCTTCTTGAACTGCTAGAAATTTGATCTTTTTACACAATTAAAGGTTTTCATTATAATTTTCTGATTATTCAAAAACATTTTCAAATTTTCGATTTTCAGCTCAACAGGAACGTGTCAACCGCAATGCAGAAGCGCTGTTTTGAACGTGTATCAAAATAAGCTCGGCCGAGTTCTTCTCCGTTCCGATGCCACGTGTATTCCGGGACGAGACGAGTTGAGGACCTGTAATTTCCTGCCAGCCGAGTCTACAGTACACTGTAGTCTGGGAAAGCTGGCGTGTGAAGGAGATTTGCAGTGCAATTCGAAGTTCGGCGTTTTCATGAGCGAGTGTGAAGCTGATGCGGCAAGAGGTGAGAAGGAGGATTACTGTAGAATTTGGTGCTATTTGAAGCATCTGAAATGTTTGAGCTGCAATCTTTTTTCCAGGTGTTTGTTCGGAAAAATGCAAAACCCTTCT</canonical>
            <polymorphic>GTTTCTAGATGAGCTAGAATAGTGGTTTTTGAACAGAACTGCGTGCAATAGAGAGAGGCTTCTAGAAAAGCTAGGAACATGGTTTTTTGACAGTATTAAGCAAGATTCAATTGCTTTTTAGAATGGACCGAAAAGTTAGATTTAGAGTGTGAAAATTTTACCAAAAAATTTATTTCTATAATTTTCTAAATTTTAATCAAAACTTGGTTTTTTCCCAAACGGGGAATTTTTAGTTTTTCTGAAAATACATTTCATTTTCTACAAATTCGTTCAGAAGTCACTTCTCTAGCTATTCTAGAAGCCAAGATATACCTTTTTGAAGCTTTGAATAGACGCAGACAGTTAGAGTGTCTCGTTGTCTGCGTCTCTACCTTCTGAATTTACTCTAAATTTGTTACTCATAGCATTCTACACATTCCTGTCTAAATTTGAGGTTTCTGGCTATTCTAGGAGTCGAGATACGACCATATAAATTTTCGGAGGCTAGAGACGCCAGACGRCGAGACACACTGCGTCTCTAATCTTCAAATGGCTGTATCTGGGCTTCTTGAACTGCTAGAAATTTGATCTTTTTACACAATTAAAGGTTTTCATTATAATTTTCTGATTATTCAAAAACATTTTCAAATTTTCGATTTTCAGCTCAACAGGAACGTGTCAACCGCAATGCAGAAGCGCTGTTTTGAACGTGTATCAAAATAAGCTCGGCCGAGTTCTTCTCCGTTCCGATGCCACGTGTATTCCGGGACGAGACGAGTTGAGGACCTGTAATTTCCTGCCAGCCGAGTCTACAGTACACTGTAGTCTGGGAAAGCTGGCGTGTGAAGGAGATTTGCAGTGCAATTCGAAGTTCGGCGTTTTCATGAGCGAGTGTGAAGCTGATGCGGCAAGAGGTGAGAAGGAGGATTACTGTAGAATTTGGTGCTATTTGAAGCATCTGAAATGTTTGAGCTGCAATCTTTTTTCCAGGTGTTTGTTCGGAAAAATGCAAAACCCTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTACTCATAGCATTCTACACATT</pcr_primer_p1>
		<pcr_primer_p2>TTGAGCTGAAAATCGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TGTTACTCATAGCATTCTACACATTCCTGTCTAAATTTGAGGTTTCTGGCTATTCTAGGAGTCGAGATACGACCATATAAATTTTCGGAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAATCTTCAAATGGCTGTATCTGGGCTTCTTGAACTGCTAGAAATTTGATCTTTTTACACAATTAAAGGTTTTCATTATAATTTTCTGATTATTCAAAAACATTTTCAAATTTTCGATTTTCAGCTCAA</canonical_amplicon>
		<polymorphic_amplicon>TGTTACTCATAGCATTCTACACATTCCTGTCTAAATTTGAGGTTTCTGGCTATTCTAGGAGTCGAGATACGACCATATAAATTTTCGGAGGCTAGAGACGCCAGACGRCGAGACACACTGCGTCTCTAATCTTCAAATGGCTGTATCTGGGCTTCTTGAACTGCTAGAAATTTGATCTTTTTACACAATTAAAGGTTTTCATTATAATTTTCTGATTATTCAAAAACATTTTCAAATTTTCGATTTTCAGCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27868</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>435777</contig_pos>
        <strand></strand>
        <context>cactgcgtct[C/T]taatcttcaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATAAATTTTCGGAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCT</left_flank>
        <right_flank>TAATCTTCAAATGGCTGTATCTGGGCTTCTTGAACTGCTAGAAATTTGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGTGGTTTTTGAACAGAACTGCGTGCAATAGAGAGAGGCTTCTAGAAAAGCTAGGAACATGGTTTTTTGACAGTATTAAGCAAGATTCAATTGCTTTTTAGAATGGACCGAAAAGTTAGATTTAGAGTGTGAAAATTTTACCAAAAAATTTATTTCTATAATTTTCTAAATTTTAATCAAAACTTGGTTTTTTCCCAAACGGGGAATTTTTAGTTTTTCTGAAAATACATTTCATTTTCTACAAATTCGTTCAGAAGTCACTTCTCTAGCTATTCTAGAAGCCAAGATATACCTTTTTGAAGCTTTGAATAGACGCAGACAGTTAGAGTGTCTCGTTGTCTGCGTCTCTACCTTCTGAATTTACTCTAAATTTGTTACTCATAGCATTCTACACATTCCTGTCTAAATTTGAGGTTTCTGGCTATTCTAGGAGTCGAGATACGACCATATAAATTTTCGGAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAATCTTCAAATGGCTGTATCTGGGCTTCTTGAACTGCTAGAAATTTGATCTTTTTACACAATTAAAGGTTTTCATTATAATTTTCTGATTATTCAAAAACATTTTCAAATTTTCGATTTTCAGCTCAACAGGAACGTGTCAACCGCAATGCAGAAGCGCTGTTTTGAACGTGTATCAAAATAAGCTCGGCCGAGTTCTTCTCCGTTCCGATGCCACGTGTATTCCGGGACGAGACGAGTTGAGGACCTGTAATTTCCTGCCAGCCGAGTCTACAGTACACTGTAGTCTGGGAAAGCTGGCGTGTGAAGGAGATTTGCAGTGCAATTCGAAGTTCGGCGTTTTCATGAGCGAGTGTGAAGCTGATGCGGCAAGAGGTGAGAAGGAGGATTACTGTAGAATTTGGTGCTATTTGAAGCATCTGAAATGTTTGAGCTGCAATCTTTTTTCCAGGTGTTTGTTCGGAAAAATGCAAAACCCTTCTGAATCAGACAATCGAAAC</canonical>
            <polymorphic>ATAGTGGTTTTTGAACAGAACTGCGTGCAATAGAGAGAGGCTTCTAGAAAAGCTAGGAACATGGTTTTTTGACAGTATTAAGCAAGATTCAATTGCTTTTTAGAATGGACCGAAAAGTTAGATTTAGAGTGTGAAAATTTTACCAAAAAATTTATTTCTATAATTTTCTAAATTTTAATCAAAACTTGGTTTTTTCCCAAACGGGGAATTTTTAGTTTTTCTGAAAATACATTTCATTTTCTACAAATTCGTTCAGAAGTCACTTCTCTAGCTATTCTAGAAGCCAAGATATACCTTTTTGAAGCTTTGAATAGACGCAGACAGTTAGAGTGTCTCGTTGTCTGCGTCTCTACCTTCTGAATTTACTCTAAATTTGTTACTCATAGCATTCTACACATTCCTGTCTAAATTTGAGGTTTCTGGCTATTCTAGGAGTCGAGATACGACCATATAAATTTTCGGAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTYTAATCTTCAAATGGCTGTATCTGGGCTTCTTGAACTGCTAGAAATTTGATCTTTTTACACAATTAAAGGTTTTCATTATAATTTTCTGATTATTCAAAAACATTTTCAAATTTTCGATTTTCAGCTCAACAGGAACGTGTCAACCGCAATGCAGAAGCGCTGTTTTGAACGTGTATCAAAATAAGCTCGGCCGAGTTCTTCTCCGTTCCGATGCCACGTGTATTCCGGGACGAGACGAGTTGAGGACCTGTAATTTCCTGCCAGCCGAGTCTACAGTACACTGTAGTCTGGGAAAGCTGGCGTGTGAAGGAGATTTGCAGTGCAATTCGAAGTTCGGCGTTTTCATGAGCGAGTGTGAAGCTGATGCGGCAAGAGGTGAGAAGGAGGATTACTGTAGAATTTGGTGCTATTTGAAGCATCTGAAATGTTTGAGCTGCAATCTTTTTTCCAGGTGTTTGTTCGGAAAAATGCAAAACCCTTCTGAATCAGACAATCGAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTACTCATAGCATTCTACACATT</pcr_primer_p1>
		<pcr_primer_p2>TTGAGCTGAAAATCGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TGTTACTCATAGCATTCTACACATTCCTGTCTAAATTTGAGGTTTCTGGCTATTCTAGGAGTCGAGATACGACCATATAAATTTTCGGAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAATCTTCAAATGGCTGTATCTGGGCTTCTTGAACTGCTAGAAATTTGATCTTTTTACACAATTAAAGGTTTTCATTATAATTTTCTGATTATTCAAAAACATTTTCAAATTTTCGATTTTCAGCTCAA</canonical_amplicon>
		<polymorphic_amplicon>TGTTACTCATAGCATTCTACACATTCCTGTCTAAATTTGAGGTTTCTGGCTATTCTAGGAGTCGAGATACGACCATATAAATTTTCGGAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTYTAATCTTCAAATGGCTGTATCTGGGCTTCTTGAACTGCTAGAAATTTGATCTTTTTACACAATTAAAGGTTTTCATTATAATTTTCTGATTATTCAAAAACATTTTCAAATTTTCGATTTTCAGCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27869</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>436067</contig_pos>
        <strand>+</strand>
        <context>ACTGTAGTCT[G/T]GGAAAGCTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGAGGACCTGTAATTTCCTGCCAGCCGAGTCTACAGTACACTGTAGTCT</left_flank>
        <right_flank>GGAAAGCTGGCGTGTGAAGGAGATTTGCAGTGCAATTCGAAGTTCGGCGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATACCTTTTTGAAGCTTTGAATAGACGCAGACAGTTAGAGTGTCTCGTTGTCTGCGTCTCTACCTTCTGAATTTACTCTAAATTTGTTACTCATAGCATTCTACACATTCCTGTCTAAATTTGAGGTTTCTGGCTATTCTAGGAGTCGAGATACGACCATATAAATTTTCGGAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAATCTTCAAATGGCTGTATCTGGGCTTCTTGAACTGCTAGAAATTTGATCTTTTTACACAATTAAAGGTTTTCATTATAATTTTCTGATTATTCAAAAACATTTTCAAATTTTCGATTTTCAGCTCAACAGGAACGTGTCAACCGCAATGCAGAAGCGCTGTTTTGAACGTGTATCAAAATAAGCTCGGCCGAGTTCTTCTCCGTTCCGATGCCACGTGTATTCCGGGACGAGACGAGTTGAGGACCTGTAATTTCCTGCCAGCCGAGTCTACAGTACACTGTAGTCTGGGAAAGCTGGCGTGTGAAGGAGATTTGCAGTGCAATTCGAAGTTCGGCGTTTTCATGAGCGAGTGTGAAGCTGATGCGGCAAGAGGTGAGAAGGAGGATTACTGTAGAATTTGGTGCTATTTGAAGCATCTGAAATGTTTGAGCTGCAATCTTTTTTCCAGGTGTTTGTTCGGAAAAATGCAAAACCCTTCTGAATCAGACAATCGAAACTTCCGTCGGAGCAATTTTCTCGAATTGCACATGCACCGCCCGTGACGATCAATTGTGCACTAATTTGAAGGATAACCTGTTGGGCGTTTGTTTGAAGGTACGGTAGTGATGGCCTAGAAAACTCAAAAATCAGCTTTCTAGGCCAATGAAATTTAAAAGGAATCAAACTAGAAGAAGGTTAATTTTTGGAGCTTTATTTTTATTTTTTGTGGAATTTTCAATCTTTGATTTCCCGAATTTTGAGTTTTCTGAAAATCTGAAATTCTGAGATTCTGAATTTCTGAGATTCT</canonical>
            <polymorphic>ATACCTTTTTGAAGCTTTGAATAGACGCAGACAGTTAGAGTGTCTCGTTGTCTGCGTCTCTACCTTCTGAATTTACTCTAAATTTGTTACTCATAGCATTCTACACATTCCTGTCTAAATTTGAGGTTTCTGGCTATTCTAGGAGTCGAGATACGACCATATAAATTTTCGGAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAATCTTCAAATGGCTGTATCTGGGCTTCTTGAACTGCTAGAAATTTGATCTTTTTACACAATTAAAGGTTTTCATTATAATTTTCTGATTATTCAAAAACATTTTCAAATTTTCGATTTTCAGCTCAACAGGAACGTGTCAACCGCAATGCAGAAGCGCTGTTTTGAACGTGTATCAAAATAAGCTCGGCCGAGTTCTTCTCCGTTCCGATGCCACGTGTATTCCGGGACGAGACGAGTTGAGGACCTGTAATTTCCTGCCAGCCGAGTCTACAGTACACTGTAGTCTKGGAAAGCTGGCGTGTGAAGGAGATTTGCAGTGCAATTCGAAGTTCGGCGTTTTCATGAGCGAGTGTGAAGCTGATGCGGCAAGAGGTGAGAAGGAGGATTACTGTAGAATTTGGTGCTATTTGAAGCATCTGAAATGTTTGAGCTGCAATCTTTTTTCCAGGTGTTTGTTCGGAAAAATGCAAAACCCTTCTGAATCAGACAATCGAAACTTCCGTCGGAGCAATTTTCTCGAATTGCACATGCACCGCCCGTGACGATCAATTGTGCACTAATTTGAAGGATAACCTGTTGGGCGTTTGTTTGAAGGTACGGTAGTGATGGCCTAGAAAACTCAAAAATCAGCTTTCTAGGCCAATGAAATTTAAAAGGAATCAAACTAGAAGAAGGTTAATTTTTGGAGCTTTATTTTTATTTTTTGTGGAATTTTCAATCTTTGATTTCCCGAATTTTGAGTTTTCTGAAAATCTGAAATTCTGAGATTCTGAATTTCTGAGATTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACGAGTTGAGGACCTGTAAT</pcr_primer_p1>
		<pcr_primer_p2>AGAAGGGTTTTGCATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GACGAGTTGAGGACCTGTAATTTCCTGCCAGCCGAGTCTACAGTACACTGTAGTCTGGGAAAGCTGGCGTGTGAAGGAGATTTGCAGTGCAATTCGAAGTTCGGCGTTTTCATGAGCGAGTGTGAAGCTGATGCGGCAAGAGGTGAGAAGGAGGATTACTGTAGAATTTGGTGCTATTTGAAGCATCTGAAATGTTTGAGCTGCAATCTTTTTTCCAGGTGTTTGTTCGGAAAAATGCAAAACCCTTCT</canonical_amplicon>
		<polymorphic_amplicon>GACGAGTTGAGGACCTGTAATTTCCTGCCAGCCGAGTCTACAGTACACTGTAGTCTKGGAAAGCTGGCGTGTGAAGGAGATTTGCAGTGCAATTCGAAGTTCGGCGTTTTCATGAGCGAGTGTGAAGCTGATGCGGCAAGAGGTGAGAAGGAGGATTACTGTAGAATTTGGTGCTATTTGAAGCATCTGAAATGTTTGAGCTGCAATCTTTTTTCCAGGTGTTTGTTCGGAAAAATGCAAAACCCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27870</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>461744</contig_pos>
        <strand>+</strand>
        <context>AATTAGAAAA[C/T]CTAAATATCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGTTGTAGCAAAAAGTACAGTAATCCAAAAATGCCATAAAATTAGAAAA</left_flank>
        <right_flank>CTAAATATCGGAAACTGAAAATTTCGAAACTTTTCGATTTTCGGAATATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTAATTCCCAAAATTTCCTTAATTACTGTACTATTTTGTGGGTTACTGTACCTGTTTTTTTCTCTCGACAATTTCCGTTTTACCTATTTTTGGGGGTAGGAGGGTCATGACGACCCCCCGTTGACACTTTTGTTCCTTTGTTTCCGAAATTTCTTGAAAATCTAGAGTAAAATTGATGAGTGTAGCAAAAACTACAGTAATCCGAAAAATTGGAATATTTCAAAAAAATCGAAACATTTCATGATCACTAAACCTATTTATCCTTTTTTTTTCAATTTCGAAAAATTCCAAACAATCTTGAAATAATTTAGAAGTTTCAACATTTCGAATTTTGAAACTTGAAAAAAAATGTAAAAAAATTTTTTGGGGTATTTTTAGTTTCCCAAAGTTTCAGTTTTTCTGGATTACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTAGCAAAAAGTACAGTAATCCAAAAATGCCATAAAATTAGAAAACCTAAATATCGGAAACTGAAAATTTCGAAACTTTTCGATTTTCGGAATATTTTTTAAGAAATCAAGAAAAATTTTTTTTTCAAATTTTTAAAATTTCACCAATTTCAAAAAAATCCTATAGTTCACACTCTGATTTTCTGACTGGATTACTGTGTCTTTTAAAAAAGGATTACTGTAGAAAAAGTTCTCCCAAGACCTCGAAAACTCAACTTTTTATTCCAAATCTCCAGGAAATTACATTTCCTCTCTCCAAATCTGTCAGTTGCTTTTTTTTTGGAAAAAGAACGTGTGAACATTCATTTAACGTCTTCTTCTTCTCCTTTTCCTTACTTTTTCTTCTAAATAGCAATTAAAAAAGATTTGCGCACTTGATATGTCCCCTCCTCCCCATCTATTCAAATAGGAGAATTGAACATATTTTGAATTTCGCGCCCAATTAATTTTCCGGATGATTTGAAGAATACATAGTAAAACTTCGCAGGAGGAGGTCAGATAATGGGA</canonical>
            <polymorphic>TTTTTTAATTCCCAAAATTTCCTTAATTACTGTACTATTTTGTGGGTTACTGTACCTGTTTTTTTCTCTCGACAATTTCCGTTTTACCTATTTTTGGGGGTAGGAGGGTCATGACGACCCCCCGTTGACACTTTTGTTCCTTTGTTTCCGAAATTTCTTGAAAATCTAGAGTAAAATTGATGAGTGTAGCAAAAACTACAGTAATCCGAAAAATTGGAATATTTCAAAAAAATCGAAACATTTCATGATCACTAAACCTATTTATCCTTTTTTTTTCAATTTCGAAAAATTCCAAACAATCTTGAAATAATTTAGAAGTTTCAACATTTCGAATTTTGAAACTTGAAAAAAAATGTAAAAAAATTTTTTGGGGTATTTTTAGTTTCCCAAAGTTTCAGTTTTTCTGGATTACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTAGCAAAAAGTACAGTAATCCAAAAATGCCATAAAATTAGAAAAYCTAAATATCGGAAACTGAAAATTTCGAAACTTTTCGATTTTCGGAATATTTTTTAAGAAATCAAGAAAAATTTTTTTTTCAAATTTTTAAAATTTCACCAATTTCAAAAAAATCCTATAGTTCACACTCTGATTTTCTGACTGGATTACTGTGTCTTTTAAAAAAGGATTACTGTAGAAAAAGTTCTCCCAAGACCTCGAAAACTCAACTTTTTATTCCAAATCTCCAGGAAATTACATTTCCTCTCTCCAAATCTGTCAGTTGCTTTTTTTTTGGAAAAAGAACGTGTGAACATTCATTTAACGTCTTCTTCTTCTCCTTTTCCTTACTTTTTCTTCTAAATAGCAATTAAAAAAGATTTGCGCACTTGATATGTCCCCTCCTCCCCATCTATTCAAATAGGAGAATTGAACATATTTTGAATTTCGCGCCCAATTAATTTTCCGGATGATTTGAAGAATACATAGTAAAACTTCGCAGGAGGAGGTCAGATAATGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGTTTCAGTTTTTCTGGATTAC</pcr_primer_p1>
		<pcr_primer_p2>GTCAGAAAATCAGAGTGTGAACT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAAGTTTCAGTTTTTCTGGATTACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTAGCAAAAAGTACAGTAATCCAAAAATGCCATAAAATTAGAAAACCTAAATATCGGAAACTGAAAATTTCGAAACTTTTCGATTTTCGGAATATTTTTTAAGAAATCAAGAAAAATTTTTTTTTCAAATTTTTAAAATTTCACCAATTTCAAAAAAATCCTATAGTTCACACTCTGATTTTCTGAC</canonical_amplicon>
		<polymorphic_amplicon>AAAGTTTCAGTTTTTCTGGATTACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTAGCAAAAAGTACAGTAATCCAAAAATGCCATAAAATTAGAAAAYCTAAATATCGGAAACTGAAAATTTCGAAACTTTTCGATTTTCGGAATATTTTTTAAGAAATCAAGAAAAATTTTTTTTTCAAATTTTTAAAATTTCACCAATTTCAAAAAAATCCTATAGTTCACACTCTGATTTTCTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27871</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>466304</contig_pos>
        <strand>+</strand>
        <context>tttgacatct[C/T]tcataggaac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGTGATATTATGATAATTAATTTTACCTGGCAAAACTTATTTGACATCT</left_flank>
        <right_flank>TCATAGGAACCGAGATAATTGAGCGCAAAGTGTACGAGCTATACGCTCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGATGAGCTAGAAACCTGGTTTTTATACCAAAATGGAGCAAATGAGACTTCGCGGTTTTTTGGCAAAGTAGAAAGTTAAAAACTGTGATAGGTTCCCATAAATCAATTTGATTTAGAAGCCCCTAGGGGAGCTAGAACTCCAAATCCAATCAATTTCAGAAGAACCTCAAGACCTGTTATGGTATACAGCCTGAGCTACACGGTTGCCTGCTTTTCTTTCCCTGCAACTTGGCCCATAGGCGAGATACAGCGTTTCAAGTTTTGTCATTTTGTAGCTCTTGAATTTTCCCATCAGACTCATTCGATTTGTTCCAAACATAATAAGTCGGAAAAAACTTATGGGCGTGTTTGTAAATTTTAACGGAAGCCCATCTTATGTGTACACTTTGAGCTCAATTATCTCGGTTCCTAATTAAGATATCAAATATCTGTCAACTGATAAAGTATTAGTGATATTATGATAATTAATTTTACCTGGCAAAACTTATTTGACATCTCTCATAGGAACCGAGATAATTGAGCGCAAAGTGTACGAGCTATACGCTCACAAGATTTTCTACATTTCTGTCCAGTCTTCAATTTTCTAGCTCTTCTGGAAGCCAAGATACATACGTTTGAAGTTTCTAGCGGAAGTTTCAAACTTCTAAAACTACCTCCAACTTTTTCTTGAGTATTTTTGTCCCCCAAAAGTCTGCAAGATTTCAAAACCACCAACTTCCTCCGATTTTTTTTCAGACGACTGCAGTAAATCATCATCGGATGACGAGGACACGAACGACACGTCATCTGCCTCCTCCTCATCGGCCCGCCGAAATCGTACATCATTCTCCGCCGAACAACTTGACGTACTTGAGACATCCTTTCGAGCATCCACCTATCCAGACGCTCAAGCCAAAGAGCACATCGCCAAGGAGACAGGGCTATCGGAGGAAAAAATTATGACATGGTTCTCTAATAGAAGGGCACGGTGCCGAAAGAATATGCCCATTTATCATCAG</canonical>
            <polymorphic>ATAGATGAGCTAGAAACCTGGTTTTTATACCAAAATGGAGCAAATGAGACTTCGCGGTTTTTTGGCAAAGTAGAAAGTTAAAAACTGTGATAGGTTCCCATAAATCAATTTGATTTAGAAGCCCCTAGGGGAGCTAGAACTCCAAATCCAATCAATTTCAGAAGAACCTCAAGACCTGTTATGGTATACAGCCTGAGCTACACGGTTGCCTGCTTTTCTTTCCCTGCAACTTGGCCCATAGGCGAGATACAGCGTTTCAAGTTTTGTCATTTTGTAGCTCTTGAATTTTCCCATCAGACTCATTCGATTTGTTCCAAACATAATAAGTCGGAAAAAACTTATGGGCGTGTTTGTAAATTTTAACGGAAGCCCATCTTATGTGTACACTTTGAGCTCAATTATCTCGGTTCCTAATTAAGATATCAAATATCTGTCAACTGATAAAGTATTAGTGATATTATGATAATTAATTTTACCTGGCAAAACTTATTTGACATCTYTCATAGGAACCGAGATAATTGAGCGCAAAGTGTACGAGCTATACGCTCACAAGATTTTCTACATTTCTGTCCAGTCTTCAATTTTCTAGCTCTTCTGGAAGCCAAGATACATACGTTTGAAGTTTCTAGCGGAAGTTTCAAACTTCTAAAACTACCTCCAACTTTTTCTTGAGTATTTTTGTCCCCCAAAAGTCTGCAAGATTTCAAAACCACCAACTTCCTCCGATTTTTTTTCAGACGACTGCAGTAAATCATCATCGGATGACGAGGACACGAACGACACGTCATCTGCCTCCTCCTCATCGGCCCGCCGAAATCGTACATCATTCTCCGCCGAACAACTTGACGTACTTGAGACATCCTTTCGAGCATCCACCTATCCAGACGCTCAAGCCAAAGAGCACATCGCCAAGGAGACAGGGCTATCGGAGGAAAAAATTATGACATGGTTCTCTAATAGAAGGGCACGGTGCCGAAAGAATATGCCCATTTATCATCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATGGTATACAGCCTGAGCTAC</pcr_primer_p1>
		<pcr_primer_p2>TGGAGGTAGTTTTAGAAGTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>482</pcr_amplicon_size>
		<canonical_amplicon>TTATGGTATACAGCCTGAGCTACACGGTTGCCTGCTTTTCTTTCCCTGCAACTTGGCCCATAGGCGAGATACAGCGTTTCAAGTTTTGTCATTTTGTAGCTCTTGAATTTTCCCATCAGACTCATTCGATTTGTTCCAAACATAATAAGTCGGAAAAAACTTATGGGCGTGTTTGTAAATTTTAACGGAAGCCCATCTTATGTGTACACTTTGAGCTCAATTATCTCGGTTCCTAATTAAGATATCAAATATCTGTCAACTGATAAAGTATTAGTGATATTATGATAATTAATTTTACCTGGCAAAACTTATTTGACATCTCTCATAGGAACCGAGATAATTGAGCGCAAAGTGTACGAGCTATACGCTCACAAGATTTTCTACATTTCTGTCCAGTCTTCAATTTTCTAGCTCTTCTGGAAGCCAAGATACATACGTTTGAAGTTTCTAGCGGAAGTTTCAAACTTCTAAAACTACCTCCA</canonical_amplicon>
		<polymorphic_amplicon>TTATGGTATACAGCCTGAGCTACACGGTTGCCTGCTTTTCTTTCCCTGCAACTTGGCCCATAGGCGAGATACAGCGTTTCAAGTTTTGTCATTTTGTAGCTCTTGAATTTTCCCATCAGACTCATTCGATTTGTTCCAAACATAATAAGTCGGAAAAAACTTATGGGCGTGTTTGTAAATTTTAACGGAAGCCCATCTTATGTGTACACTTTGAGCTCAATTATCTCGGTTCCTAATTAAGATATCAAATATCTGTCAACTGATAAAGTATTAGTGATATTATGATAATTAATTTTACCTGGCAAAACTTATTTGACATCTYTCATAGGAACCGAGATAATTGAGCGCAAAGTGTACGAGCTATACGCTCACAAGATTTTCTACATTTCTGTCCAGTCTTCAATTTTCTAGCTCTTCTGGAAGCCAAGATACATACGTTTGAAGTTTCTAGCGGAAGTTTCAAACTTCTAAAACTACCTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27872</snp_id>
        <super_contig>c003300912.Contig3</super_contig>
        <contig_pos>466361</contig_pos>
        <strand></strand>
        <context>TCAMaagatt[T/G]tctacatttc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GAACCGAGATAATTGAGCGCAAAGTGTACGAGCTATACGCTCACAAGATT</left_flank>
        <right_flank>TCTACATTTCTGTCCAGTCTTCAATTTTCTAGCTCTTCTGGAAGCCAAGA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTGGCAAAGTAGAAAGTTAAAAACTGTGATAGGTTCCCATAAATCAATTTGATTTAGAAGCCCCTAGGGGAGCTAGAACTCCAAATCCAATCAATTTCAGAAGAACCTCAAGACCTGTTATGGTATACAGCCTGAGCTACACGGTTGCCTGCTTTTCTTTCCCTGCAACTTGGCCCATAGGCGAGATACAGCGTTTCAAGTTTTGTCATTTTGTAGCTCTTGAATTTTCCCATCAGACTCATTCGATTTGTTCCAAACATAATAAGTCGGAAAAAACTTATGGGCGTGTTTGTAAATTTTAACGGAAGCCCATCTTATGTGTACACTTTGAGCTCAATTATCTCGGTTCCTAATTAAGATATCAAATATCTGTCAACTGATAAAGTATTAGTGATATTATGATAATTAATTTTACCTGGCAAAACTTATTTGACATCTCTCATAGGAACCGAGATAATTGAGCGCAAAGTGTACGAGCTATACGCTCACAAGATTTTCTACATTTCTGTCCAGTCTTCAATTTTCTAGCTCTTCTGGAAGCCAAGATACATACGTTTGAAGTTTCTAGCGGAAGTTTCAAACTTCTAAAACTACCTCCAACTTTTTCTTGAGTATTTTTGTCCCCCAAAAGTCTGCAAGATTTCAAAACCACCAACTTCCTCCGATTTTTTTTCAGACGACTGCAGTAAATCATCATCGGATGACGAGGACACGAACGACACGTCATCTGCCTCCTCCTCATCGGCCCGCCGAAATCGTACATCATTCTCCGCCGAACAACTTGACGTACTTGAGACATCCTTTCGAGCATCCACCTATCCAGACGCTCAAGCCAAAGAGCACATCGCCAAGGAGACAGGGCTATCGGAGGAAAAAATTATGACATGGTTCTCTAATAGAAGGGCACGGTGCCGAAAGAATATGCCCATTTATCATCAGTACAATACCGCGCACGGGTTTAATGGACCACAGGTGAGCTAATTTTATAATTAGAGA</canonical>
            <polymorphic>TTTTTTGGCAAAGTAGAAAGTTAAAAACTGTGATAGGTTCCCATAAATCAATTTGATTTAGAAGCCCCTAGGGGAGCTAGAACTCCAAATCCAATCAATTTCAGAAGAACCTCAAGACCTGTTATGGTATACAGCCTGAGCTACACGGTTGCCTGCTTTTCTTTCCCTGCAACTTGGCCCATAGGCGAGATACAGCGTTTCAAGTTTTGTCATTTTGTAGCTCTTGAATTTTCCCATCAGACTCATTCGATTTGTTCCAAACATAATAAGTCGGAAAAAACTTATGGGCGTGTTTGTAAATTTTAACGGAAGCCCATCTTATGTGTACACTTTGAGCTCAATTATCTCGGTTCCTAATTAAGATATCAAATATCTGTCAACTGATAAAGTATTAGTGATATTATGATAATTAATTTTACCTGGCAAAACTTATTTGACATCTCTCATAGGAACCGAGATAATTGAGCGCAAAGTGTACGAGCTATACGCTCACAAGATTKTCTACATTTCTGTCCAGTCTTCAATTTTCTAGCTCTTCTGGAAGCCAAGATACATACGTTTGAAGTTTCTAGCGGAAGTTTCAAACTTCTAAAACTACCTCCAACTTTTTCTTGAGTATTTTTGTCCCCCAAAAGTCTGCAAGATTTCAAAACCACCAACTTCCTCCGATTTTTTTTCAGACGACTGCAGTAAATCATCATCGGATGACGAGGACACGAACGACACGTCATCTGCCTCCTCCTCATCGGCCCGCCGAAATCGTACATCATTCTCCGCCGAACAACTTGACGTACTTGAGACATCCTTTCGAGCATCCACCTATCCAGACGCTCAAGCCAAAGAGCACATCGCCAAGGAGACAGGGCTATCGGAGGAAAAAATTATGACATGGTTCTCTAATAGAAGGGCACGGTGCCGAAAGAATATGCCCATTTATCATCAGTACAATACCGCGCACGGGTTTAATGGACCACAGGTGAGCTAATTTTATAATTAGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATGGTATACAGCCTGAGCTAC</pcr_primer_p1>
		<pcr_primer_p2>TGGAGGTAGTTTTAGAAGTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>482</pcr_amplicon_size>
		<canonical_amplicon>TTATGGTATACAGCCTGAGCTACACGGTTGCCTGCTTTTCTTTCCCTGCAACTTGGCCCATAGGCGAGATACAGCGTTTCAAGTTTTGTCATTTTGTAGCTCTTGAATTTTCCCATCAGACTCATTCGATTTGTTCCAAACATAATAAGTCGGAAAAAACTTATGGGCGTGTTTGTAAATTTTAACGGAAGCCCATCTTATGTGTACACTTTGAGCTCAATTATCTCGGTTCCTAATTAAGATATCAAATATCTGTCAACTGATAAAGTATTAGTGATATTATGATAATTAATTTTACCTGGCAAAACTTATTTGACATCTCTCATAGGAACCGAGATAATTGAGCGCAAAGTGTACGAGCTATACGCTCACAAGATTTTCTACATTTCTGTCCAGTCTTCAATTTTCTAGCTCTTCTGGAAGCCAAGATACATACGTTTGAAGTTTCTAGCGGAAGTTTCAAACTTCTAAAACTACCTCCA</canonical_amplicon>
		<polymorphic_amplicon>TTATGGTATACAGCCTGAGCTACACGGTTGCCTGCTTTTCTTTCCCTGCAACTTGGCCCATAGGCGAGATACAGCGTTTCAAGTTTTGTCATTTTGTAGCTCTTGAATTTTCCCATCAGACTCATTCGATTTGTTCCAAACATAATAAGTCGGAAAAAACTTATGGGCGTGTTTGTAAATTTTAACGGAAGCCCATCTTATGTGTACACTTTGAGCTCAATTATCTCGGTTCCTAATTAAGATATCAAATATCTGTCAACTGATAAAGTATTAGTGATATTATGATAATTAATTTTACCTGGCAAAACTTATTTGACATCTCTCATAGGAACCGAGATAATTGAGCGCAAAGTGTACGAGCTATACGCTCACAAGATTKTCTACATTTCTGTCCAGTCTTCAATTTTCTAGCTCTTCTGGAAGCCAAGATACATACGTTTGAAGTTTCTAGCGGAAGTTTCAAACTTCTAAAACTACCTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27873</snp_id>
        <super_contig>c003300939.Contig1</super_contig>
        <contig_pos>2318</contig_pos>
        <strand></strand>
        <context>CAAACAGAGA[T/A]WATTAAGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTAAAAACTCTAGGCTAACTTTAAACGGCACAGGAAATAACAAACAGAGA</left_flank>
        <right_flank>TATTAAGTTTTGGCGGGAATCCGAAATAGAATTTGAGAAATTTTTTCCAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTGAGTATCAATTGGTATTAAGGCCGATTCCCATGAACTACGATCAATGGTATAATCCACTAGCAAGGCCAATTGTAGTGGAAAGATGTTTTATAGGGTAAGATTGAAATTGATGAGTTGGATAATGAATTTTTGATTTCAGAAACACATCTTGGTCATACTCTCCTCGTGTCCTTGGTGATCGGAAACAAATTGATGAATTACTGATGGAATATGCTAGAAAAGTTGATAAAGAAAAAGCAAAATCATTGGGTAGATTACCCCTTATTCTAGAAAATCCCTAATTTAATTCTTTAAAGTTTGATCTAAAACTAAAAATGTTATGTAAGACTTTGGAATCCTAAAATTAAATTCCGACAGAAACAAGTCCATTTTTGAATTCGTTTCAAAATTAAAAACTCTAGGCTAACTTTAAACGGCACAGGAAATAACAAACAGAGATTATTAAGTTTTGGCGGGAATCCGAAATAGAATTTGAGAAATTTTTTCCAAATGTGAACGACTTCGCCACTTAGGTCCCAGGAAGCGGGTCAGAAAAGGCGCCCCAGCAAACTCGTAGGCCAGAAGAAATTTAATAATTTCAAAGTGGACGCGAGTTTGATCTAGATCATGATCTACTTCTTTGAAATCAACGGGGGTTTTCGCTCATCATTTAAAATTGTGATACTCAGCCAACTAAGTTCGGCAGCGAAATTAGAATTTTTACGAAATTTACTGGGGCGCGCTTTCTGACCCGCTTCCTAGGACCCCAGTGCTTTCGAGGTATTTTGCCTCATTGGGCAGTTTTTAGTTTCGCTCTTTTTGAATTGTTTCTTTTTCTAGGAATCCACATATTATACTTTTCAAAAAATTTCATGCAATAACAATTTTTTGTCTCCCCTTTAAAATCATGTTTTAGATTTTTTAAATATATGTGTTATTATCATTATGAAATAACTTTTT</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTGAGTATCAATTGGTATTAAGGCCGATTCCCATGAACTACGATCAATGGTATAATCCACTAGCAAGGCCAATTGTAGTGGAAAGATGTTTTATAGGGTAAGATTGAAATTGATGAGTTGGATAATGAATTTTTGATTTCAGAAACACATCTTGGTCATACTCTCCTCGTGTCCTTGGTGATCGGAAACAAATTGATGAATTACTGATGGAATATGCTAGAAAAGTTGATAAAGAAAAAGCAAAATCATTGGGTAGATTACCCCTTATTCTAGAAAATCCCTAATTTAATTCTTTAAAGTTTGATCTAAAACTAAAAATGTTATGTAAGACTTTGGAATCCTAAAATTAAATTCCGACAGAAACAAGTCCATTTTTGAATTCGTTTCAAAATTAAAAACTCTAGGCTAACTTTAAACGGCACAGGAAATAACAAACAGAGAWTATTAAGTTTTGGCGGGAATCCGAAATAGAATTTGAGAAATTTTTTCCAAATGTGAACGACTTCGCCACTTAGGTCCCAGGAAGCGGGTCAGAAAAGGCGCCCCAGCAAACTCGTAGGCCAGAAGAAATTTAATAATTTCAAAGTGGACGCGAGTTTGATCTAGATCATGATCTACTTCTTTGAAATCAACGGGGGTTTTCGCTCATCATTTAAAATTGTGATACTCAGCCAACTAAGTTCGGCAGCGAAATTAGAATTTTTACGAAATTTACTGGGGCGCGCTTTCTGACCCGCTTCCTAGGACCCCAGTGCTTTCGAGGTATTTTGCCTCATTGGGCAGTTTTTAGTTTCGCTCTTTTTGAATTGTTTCTTTTTCTAGGAATCCACATATTATACTTTTCAAAAAATTTCATGCAATAACAATTTTTTGTCTCCCCTTTAAAATCATGTTTTAGATTTTTTAAATATATGTGTTATTATCATTATGAAATAACTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCTTATTCTAGAAAATCCCTAA</pcr_primer_p1>
		<pcr_primer_p2>AGTCGTTCACATTTGGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CCCTTATTCTAGAAAATCCCTAATTTAATTCTTTAAAGTTTGATCTAAAACTAAAAATGTTATGTAAGACTTTGGAATCCTAAAATTAAATTCCGACAGAAACAAGTCCATTTTTGAATTCGTTTCAAAATTAAAAACTCTAGGCTAACTTTAAACGGCACAGGAAATAACAAACAGAGATTATTAAGTTTTGGCGGGAATCCGAAATAGAATTTGAGAAATTTTTTCCAAATGTGAACGACT</canonical_amplicon>
		<polymorphic_amplicon>CCCTTATTCTAGAAAATCCCTAATTTAATTCTTTAAAGTTTGATCTAAAACTAAAAATGTTATGTAAGACTTTGGAATCCTAAAATTAAATTCCGACAGAAACAAGTCCATTTTTGAATTCGTTTCAAAATTAAAAACTCTAGGCTAACTTTAAACGGCACAGGAAATAACAAACAGAGAWTATTAAGTTTTGGCGGGAATCCGAAATAGAATTTGAGAAATTTTTTCCAAATGTGAACGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27874</snp_id>
        <super_contig>c003300939.Contig1</super_contig>
        <contig_pos>2319</contig_pos>
        <strand>-</strand>
        <context>AAACAGAGAW[A/T]ATTAAGTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAAAACTCTAGGCTAACTTTAAACGGCACAGGAAATAACAAACAGAGAT</left_flank>
        <right_flank>ATTAAGTTTTGGCGGGAATCCGAAATAGAATTTGAGAAATTTTTTCCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTGAGTATCAATTGGTATTAAGGCCGATTCCCATGAACTACGATCAATGGTATAATCCACTAGCAAGGCCAATTGTAGTGGAAAGATGTTTTATAGGGTAAGATTGAAATTGATGAGTTGGATAATGAATTTTTGATTTCAGAAACACATCTTGGTCATACTCTCCTCGTGTCCTTGGTGATCGGAAACAAATTGATGAATTACTGATGGAATATGCTAGAAAAGTTGATAAAGAAAAAGCAAAATCATTGGGTAGATTACCCCTTATTCTAGAAAATCCCTAATTTAATTCTTTAAAGTTTGATCTAAAACTAAAAATGTTATGTAAGACTTTGGAATCCTAAAATTAAATTCCGACAGAAACAAGTCCATTTTTGAATTCGTTTCAAAATTAAAAACTCTAGGCTAACTTTAAACGGCACAGGAAATAACAAACAGAGATTATTAAGTTTTGGCGGGAATCCGAAATAGAATTTGAGAAATTTTTTCCAAATGTGAACGACTTCGCCACTTAGGTCCCAGGAAGCGGGTCAGAAAAGGCGCCCCAGCAAACTCGTAGGCCAGAAGAAATTTAATAATTTCAAAGTGGACGCGAGTTTGATCTAGATCATGATCTACTTCTTTGAAATCAACGGGGGTTTTCGCTCATCATTTAAAATTGTGATACTCAGCCAACTAAGTTCGGCAGCGAAATTAGAATTTTTACGAAATTTACTGGGGCGCGCTTTCTGACCCGCTTCCTAGGACCCCAGTGCTTTCGAGGTATTTTGCCTCATTGGGCAGTTTTTAGTTTCGCTCTTTTTGAATTGTTTCTTTTTCTAGGAATCCACATATTATACTTTTCAAAAAATTTCATGCAATAACAATTTTTTGTCTCCCCTTTAAAATCATGTTTTAGATTTTTTAAATATATGTGTTATTATCATTATGAAATAACTTTTTT</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTGAGTATCAATTGGTATTAAGGCCGATTCCCATGAACTACGATCAATGGTATAATCCACTAGCAAGGCCAATTGTAGTGGAAAGATGTTTTATAGGGTAAGATTGAAATTGATGAGTTGGATAATGAATTTTTGATTTCAGAAACACATCTTGGTCATACTCTCCTCGTGTCCTTGGTGATCGGAAACAAATTGATGAATTACTGATGGAATATGCTAGAAAAGTTGATAAAGAAAAAGCAAAATCATTGGGTAGATTACCCCTTATTCTAGAAAATCCCTAATTTAATTCTTTAAAGTTTGATCTAAAACTAAAAATGTTATGTAAGACTTTGGAATCCTAAAATTAAATTCCGACAGAAACAAGTCCATTTTTGAATTCGTTTCAAAATTAAAAACTCTAGGCTAACTTTAAACGGCACAGGAAATAACAAACAGAGATWATTAAGTTTTGGCGGGAATCCGAAATAGAATTTGAGAAATTTTTTCCAAATGTGAACGACTTCGCCACTTAGGTCCCAGGAAGCGGGTCAGAAAAGGCGCCCCAGCAAACTCGTAGGCCAGAAGAAATTTAATAATTTCAAAGTGGACGCGAGTTTGATCTAGATCATGATCTACTTCTTTGAAATCAACGGGGGTTTTCGCTCATCATTTAAAATTGTGATACTCAGCCAACTAAGTTCGGCAGCGAAATTAGAATTTTTACGAAATTTACTGGGGCGCGCTTTCTGACCCGCTTCCTAGGACCCCAGTGCTTTCGAGGTATTTTGCCTCATTGGGCAGTTTTTAGTTTCGCTCTTTTTGAATTGTTTCTTTTTCTAGGAATCCACATATTATACTTTTCAAAAAATTTCATGCAATAACAATTTTTTGTCTCCCCTTTAAAATCATGTTTTAGATTTTTTAAATATATGTGTTATTATCATTATGAAATAACTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCTTATTCTAGAAAATCCCTAA</pcr_primer_p1>
		<pcr_primer_p2>AGTCGTTCACATTTGGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CCCTTATTCTAGAAAATCCCTAATTTAATTCTTTAAAGTTTGATCTAAAACTAAAAATGTTATGTAAGACTTTGGAATCCTAAAATTAAATTCCGACAGAAACAAGTCCATTTTTGAATTCGTTTCAAAATTAAAAACTCTAGGCTAACTTTAAACGGCACAGGAAATAACAAACAGAGATTATTAAGTTTTGGCGGGAATCCGAAATAGAATTTGAGAAATTTTTTCCAAATGTGAACGACT</canonical_amplicon>
		<polymorphic_amplicon>CCCTTATTCTAGAAAATCCCTAATTTAATTCTTTAAAGTTTGATCTAAAACTAAAAATGTTATGTAAGACTTTGGAATCCTAAAATTAAATTCCGACAGAAACAAGTCCATTTTTGAATTCGTTTCAAAATTAAAAACTCTAGGCTAACTTTAAACGGCACAGGAAATAACAAACAGAGATWATTAAGTTTTGGCGGGAATCCGAAATAGAATTTGAGAAATTTTTTCCAAATGTGAACGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27875</snp_id>
        <super_contig>c003300939.Contig1</super_contig>
        <contig_pos>4885</contig_pos>
        <strand>-</strand>
        <context>TTATGCAAAC[A/G]AATCACCGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGAACCCTGTACGGATTCGGAGGATAATTTCCTTCGCATTTATGCAAAC</left_flank>
        <right_flank>AATCACCGAACCCAACGGCCCTCTTTAGGGCCACAAATAACACGAATCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTCATTTATGTCGCTTAAGTACACTCATCGGATTTCACAGAAGATTTCGGGTAAACTGTTCACGCCAGTTGCAAAAAAAAGAGNNNNNNNNNNCAGAACAAAACCGGCACACAGACGACGGAAACTTCATCTCACTTGTGAGTCTTCATCAATCGCTCAACAATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAAGGAGGTGCCAAGCGCCATCGCAAGGTCCTTCGTGACAACATCCAAGGAATCACCAAGCCAGCTATTCGCCGTCTCGCTCGTCGTGGTGGAGTCAAGCGTATCTCTGGACTCATCTACGAGGAAACCCGTGGAGTTCTGAAGGTGTTCCTCGAGAACGTCATCCGTGATGCTGTCACCTACTGCGAGCACGCCAAGAGGAAGACTGTCACCGCCATGGACGTCGTCTACGCTTTGAAGCGCCAAGGAAGAACCCTGTACGGATTCGGAGGATAATTTCCTTCGCATTTATGCAAACCAATCACCGAACCCAACGGCCCTCTTTAGGGCCACAAATAACACGAATCCTAAAATATATTTCCTTGAATAAATTATGATTTTGTTGTTGTTTCTTTAAAAATTTCGCAAAAAATCTACTTGTTTCCAAAATAAATTGATCTGAGCAATCCGGTAAAACTTCGAGCGGGAACAGAAATTTATTATTTACCGTGCGTCTATTCACAAAATCTGCAACCATATGGTCCATATCAAGGAAACTTACCGACGTTTGAGGTCCTAATTCACAAATGCCCTGTCCAGTCAAGTTTTTTTCAGAATCTATTCGCTTTTCCGCATCCGACCCCCAGAATATCAACATTTCAGAATCTCGGGATCTTAGAATTTCAGAATCTTAGAATTTCAGAATTTCCGAATTTTGGTGTTTTGGCTTTTTGGAATTTTACAATTTCAGGATTTAAGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAATTCTGAAATTCAGAATTCTTAATTATG</canonical>
            <polymorphic>CTTTTCATTTATGTCGCTTAAGTACACTCATCGGATTTCACAGAAGATTTCGGGTAAACTGTTCACGCCAGTTGCAAAAAAAAGAGNNNNNNNNNNCAGAACAAAACCGGCACACAGACGACGGAAACTTCATCTCACTTGTGAGTCTTCATCAATCGCTCAACAATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAAGGAGGTGCCAAGCGCCATCGCAAGGTCCTTCGTGACAACATCCAAGGAATCACCAAGCCAGCTATTCGCCGTCTCGCTCGTCGTGGTGGAGTCAAGCGTATCTCTGGACTCATCTACGAGGAAACCCGTGGAGTTCTGAAGGTGTTCCTCGAGAACGTCATCCGTGATGCTGTCACCTACTGCGAGCACGCCAAGAGGAAGACTGTCACCGCCATGGACGTCGTCTACGCTTTGAAGCGCCAAGGAAGAACCCTGTACGGATTCGGAGGATAATTTCCTTCGCATTTATGCAAACRAATCACCGAACCCAACGGCCCTCTTTAGGGCCACAAATAACACGAATCCTAAAATATATTTCCTTGAATAAATTATGATTTTGTTGTTGTTTCTTTAAAAATTTCGCAAAAAATCTACTTGTTTCCAAAATAAATTGATCTGAGCAATCCGGTAAAACTTCGAGCGGGAACAGAAATTTATTATTTACCGTGCGTCTATTCACAAAATCTGCAACCATATGGTCCATATCAAGGAAACTTACCGACGTTTGAGGTCCTAATTCACAAATGCCCTGTCCAGTCAAGTTTTTTTCAGAATCTATTCGCTTTTCCGCATCCGACCCCCAGAATATCAACATTTCAGAATCTCGGGATCTTAGAATTTCAGAATCTTAGAATTTCAGAATTTCCGAATTTTGGTGTTTTGGCTTTTTGGAATTTTACAATTTCAGGATTTAAGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAATTCTGAAATTCAGAATTCTTAATTATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGTATCTCTGGACTCATCTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTAGGATTCGTGTTATTTGTG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>GCGTATCTCTGGACTCATCTACGAGGAAACCCGTGGAGTTCTGAAGGTGTTCCTCGAGAACGTCATCCGTGATGCTGTCACCTACTGCGAGCACGCCAAGAGGAAGACTGTCACCGCCATGGACGTCGTCTACGCTTTGAAGCGCCAAGGAAGAACCCTGTACGGATTCGGAGGATAATTTCCTTCGCATTTATGCAAACCAATCACCGAACCCAACGGCCCTCTTTAGGGCCACAAATAACACGAATCCTAAAA</canonical_amplicon>
		<polymorphic_amplicon>GCGTATCTCTGGACTCATCTACGAGGAAACCCGTGGAGTTCTGAAGGTGTTCCTCGAGAACGTCATCCGTGATGCTGTCACCTACTGCGAGCACGCCAAGAGGAAGACTGTCACCGCCATGGACGTCGTCTACGCTTTGAAGCGCCAAGGAAGAACCCTGTACGGATTCGGAGGATAATTTCCTTCGCATTTATGCAAACRAATCACCGAACCCAACGGCCCTCTTTAGGGCCACAAATAACACGAATCCTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27876</snp_id>
        <super_contig>c003300939.Contig1</super_contig>
        <contig_pos>27951</contig_pos>
        <strand>+</strand>
        <context>GTGAAAAGGA[A/T]GATGTGATAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGAGAATTTATGAACATCTGGCAATCAATATGGTAGGATGTGAAAAGGA</left_flank>
        <right_flank>GATGTGATAGGTTGAGAGTCCTCCAGGTAAGTTTGCATACATTAATGAAC</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAGTATGATAAGAGAAAAAATATATGAGTCACTTAGAGGTTATGGGGTACGGAAATGCGAACGATTTTGGGTAAGGAAAAAGAGAGGTGAGAAAAGAGAATAGCCAGACGATCGCAAATGGCTGGACACCCCATCCATTCCTCCGTGTATTTGCATTTTCTCTTTTGTGTCTTCGAAAGTGAGTCAGGACGCACCTGGCGCCCCGGTCCGCTAGCGAGCAGGTGTGAACGATTGCGCGTTTTTGTTGAGGTTGTGTGAAACGGAATGGTTTCTGGTTGGAGCTAGATTTCAACAGATGGAAACAAAAAAGAAGACGAATGAGGAAAATGGGCGAGAACGAGGGAAAATGAATGGACGTAAAACTCCCAAATTGTTCATTTGGGCTAGATAGAATCTGTATGTAAAACAAAAGAGATTGGGTCAAGAATATAAAACGAAAGAAGGTTTAGAGAATTTATGAACATCTGGCAATCAATATGGTAGGATGTGAAAAGGATGATGTGATAGGTTGAGAGTCCTCCAGGTAAGTTTGCATACATTAATGAACCATGAAGTTCAAACAGAATAAATTAGCATCAAGAATTTCGATCGAGATCGGTTCCGTTCAATTGGTTCACCTTTTCAAAGTTCAATGATCTGAAACCAAAGACTTGATTTGTTAATGGAGAATTTTTCAAAAGGGTTTTCACGAATTTTTTTCTGTTGAAATCGAAAACGACTGTTTTTGTACAAAGAAAATCTAAATGTTGAAATTTGAAACTTGAAACCGTCTTGTGTTGTCTGTACAGTTGTTACGACTCATGCTTCTGGAGTGGGAATGCGCAAAAAAACGGAAGCTATCTAACTTTTCAATGTTGATGTAATATTGAGATTCTGAGGAGCTAAACAGGATCTCCCAATGTGGCCTCCGGTTCGCTCCCATTAACCTCCCATTCCGGGTAATTCCCAAATGCGATTGGTAATTCCTGAAACCTTCGATAACTCCCATATTTCGGGG</canonical>
            <polymorphic>TTGAAGTATGATAAGAGAAAAAATATATGAGTCACTTAGAGGTTATGGGGTACGGAAATGCGAACGATTTTGGGTAAGGAAAAAGAGAGGTGAGAAAAGAGAATAGCCAGACGATCGCAAATGGCTGGACACCCCATCCATTCCTCCGTGTATTTGCATTTTCTCTTTTGTGTCTTCGAAAGTGAGTCAGGACGCACCTGGCGCCCCGGTCCGCTAGCGAGCAGGTGTGAACGATTGCGCGTTTTTGTTGAGGTTGTGTGAAACGGAATGGTTTCTGGTTGGAGCTAGATTTCAACAGATGGAAACAAAAAAGAAGACGAATGAGGAAAATGGGCGAGAACGAGGGAAAATGAATGGACGTAAAACTCCCAAATTGTTCATTTGGGCTAGATAGAATCTGTATGTAAAACAAAAGAGATTGGGTCAAGAATATAAAACGAAAGAAGGTTTAGAGAATTTATGAACATCTGGCAATCAATATGGTAGGATGTGAAAAGGAWGATGTGATAGGTTGAGAGTCCTCCAGGTAAGTTTGCATACATTAATGAACCATGAAGTTCAAACAGAATAAATTAGCATCAAGAATTTCGATCGAGATCGGTTCCGTTCAATTGGTTCACCTTTTCAAAGTTCAATGATCTGAAACCAAAGACTTGATTTGTTAATGGAGAATTTTTCAAAAGGGTTTTCACGAATTTTTTTCTGTTGAAATCGAAAACGACTGTTTTTGTACAAAGAAAATCTAAATGTTGAAATTTGAAACTTGAAACCGTCTTGTGTTGTCTGTACAGTTGTTACGACTCATGCTTCTGGAGTGGGAATGCGCAAAAAAACGGAAGCTATCTAACTTTTCAATGTTGATGTAATATTGAGATTCTGAGGAGCTAAACAGGATCTCCCAATGTGGCCTCCGGTTCGCTCCCATTAACCTCCCATTCCGGGTAATTCCCAAATGCGATTGGTAATTCCTGAAACCTTCGATAACTCCCATATTTCGGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACGAAAGAAGGTTTAGAGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAAAAATTCTCCATTAACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAACGAAAGAAGGTTTAGAGAATTTATGAACATCTGGCAATCAATATGGTAGGATGTGAAAAGGATGATGTGATAGGTTGAGAGTCCTCCAGGTAAGTTTGCATACATTAATGAACCATGAAGTTCAAACAGAATAAATTAGCATCAAGAATTTCGATCGAGATCGGTTCCGTTCAATTGGTTCACCTTTTCAAAGTTCAATGATCTGAAACCAAAGACTTGATTTGTTAATGGAGAATTTTTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAACGAAAGAAGGTTTAGAGAATTTATGAACATCTGGCAATCAATATGGTAGGATGTGAAAAGGAWGATGTGATAGGTTGAGAGTCCTCCAGGTAAGTTTGCATACATTAATGAACCATGAAGTTCAAACAGAATAAATTAGCATCAAGAATTTCGATCGAGATCGGTTCCGTTCAATTGGTTCACCTTTTCAAAGTTCAATGATCTGAAACCAAAGACTTGATTTGTTAATGGAGAATTTTTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27877</snp_id>
        <super_contig>c003300939.Contig1</super_contig>
        <contig_pos>28027</contig_pos>
        <strand>+</strand>
        <context>GAATAAATTA[A/G]CATCAAGMAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTAAGTTTGCATACATTAATGAACCATGAAGTTCAAACAGAATAAATTA</left_flank>
        <right_flank>CATCAAGAATTTCGATCGAGATCGGTTCCGTTCAATTGGTTCACCTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGAAAAAGAGAGGTGAGAAAAGAGAATAGCCAGACGATCGCAAATGGCTGGACACCCCATCCATTCCTCCGTGTATTTGCATTTTCTCTTTTGTGTCTTCGAAAGTGAGTCAGGACGCACCTGGCGCCCCGGTCCGCTAGCGAGCAGGTGTGAACGATTGCGCGTTTTTGTTGAGGTTGTGTGAAACGGAATGGTTTCTGGTTGGAGCTAGATTTCAACAGATGGAAACAAAAAAGAAGACGAATGAGGAAAATGGGCGAGAACGAGGGAAAATGAATGGACGTAAAACTCCCAAATTGTTCATTTGGGCTAGATAGAATCTGTATGTAAAACAAAAGAGATTGGGTCAAGAATATAAAACGAAAGAAGGTTTAGAGAATTTATGAACATCTGGCAATCAATATGGTAGGATGTGAAAAGGATGATGTGATAGGTTGAGAGTCCTCCAGGTAAGTTTGCATACATTAATGAACCATGAAGTTCAAACAGAATAAATTAGCATCAAGAATTTCGATCGAGATCGGTTCCGTTCAATTGGTTCACCTTTTCAAAGTTCAATGATCTGAAACCAAAGACTTGATTTGTTAATGGAGAATTTTTCAAAAGGGTTTTCACGAATTTTTTTCTGTTGAAATCGAAAACGACTGTTTTTGTACAAAGAAAATCTAAATGTTGAAATTTGAAACTTGAAACCGTCTTGTGTTGTCTGTACAGTTGTTACGACTCATGCTTCTGGAGTGGGAATGCGCAAAAAAACGGAAGCTATCTAACTTTTCAATGTTGATGTAATATTGAGATTCTGAGGAGCTAAACAGGATCTCCCAATGTGGCCTCCGGTTCGCTCCCATTAACCTCCCATTCCGGGTAATTCCCAAATGCGATTGGTAATTCCTGAAACCTTCGATAACTCCCATATTTCGGGGAGAGAATTCGAGGCGTCTCCCTCATCGGTGACGCCCCGAATTGGTCGAGTAACTCTCTGAAAATTACCTAAAAACG</canonical>
            <polymorphic>AGGAAAAAGAGAGGTGAGAAAAGAGAATAGCCAGACGATCGCAAATGGCTGGACACCCCATCCATTCCTCCGTGTATTTGCATTTTCTCTTTTGTGTCTTCGAAAGTGAGTCAGGACGCACCTGGCGCCCCGGTCCGCTAGCGAGCAGGTGTGAACGATTGCGCGTTTTTGTTGAGGTTGTGTGAAACGGAATGGTTTCTGGTTGGAGCTAGATTTCAACAGATGGAAACAAAAAAGAAGACGAATGAGGAAAATGGGCGAGAACGAGGGAAAATGAATGGACGTAAAACTCCCAAATTGTTCATTTGGGCTAGATAGAATCTGTATGTAAAACAAAAGAGATTGGGTCAAGAATATAAAACGAAAGAAGGTTTAGAGAATTTATGAACATCTGGCAATCAATATGGTAGGATGTGAAAAGGATGATGTGATAGGTTGAGAGTCCTCCAGGTAAGTTTGCATACATTAATGAACCATGAAGTTCAAACAGAATAAATTARCATCAAGAATTTCGATCGAGATCGGTTCCGTTCAATTGGTTCACCTTTTCAAAGTTCAATGATCTGAAACCAAAGACTTGATTTGTTAATGGAGAATTTTTCAAAAGGGTTTTCACGAATTTTTTTCTGTTGAAATCGAAAACGACTGTTTTTGTACAAAGAAAATCTAAATGTTGAAATTTGAAACTTGAAACCGTCTTGTGTTGTCTGTACAGTTGTTACGACTCATGCTTCTGGAGTGGGAATGCGCAAAAAAACGGAAGCTATCTAACTTTTCAATGTTGATGTAATATTGAGATTCTGAGGAGCTAAACAGGATCTCCCAATGTGGCCTCCGGTTCGCTCCCATTAACCTCCCATTCCGGGTAATTCCCAAATGCGATTGGTAATTCCTGAAACCTTCGATAACTCCCATATTTCGGGGAGAGAATTCGAGGCGTCTCCCTCATCGGTGACGCCCCGAATTGGTCGAGTAACTCTCTGAAAATTACCTAAAAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACGAAAGAAGGTTTAGAGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAAAAATTCTCCATTAACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAACGAAAGAAGGTTTAGAGAATTTATGAACATCTGGCAATCAATATGGTAGGATGTGAAAAGGATGATGTGATAGGTTGAGAGTCCTCCAGGTAAGTTTGCATACATTAATGAACCATGAAGTTCAAACAGAATAAATTAGCATCAAGAATTTCGATCGAGATCGGTTCCGTTCAATTGGTTCACCTTTTCAAAGTTCAATGATCTGAAACCAAAGACTTGATTTGTTAATGGAGAATTTTTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAACGAAAGAAGGTTTAGAGAATTTATGAACATCTGGCAATCAATATGGTAGGATGTGAAAAGGATGATGTGATAGGTTGAGAGTCCTCCAGGTAAGTTTGCATACATTAATGAACCATGAAGTTCAAACAGAATAAATTARCATCAAGAATTTCGATCGAGATCGGTTCCGTTCAATTGGTTCACCTTTTCAAAGTTCAATGATCTGAAACCAAAGACTTGATTTGTTAATGGAGAATTTTTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27878</snp_id>
        <super_contig>c003300939.Contig1</super_contig>
        <contig_pos>31369</contig_pos>
        <strand></strand>
        <context>GCAGCCACCA[A/C]TCTGTCTGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATTCCCAATCAGTAGCAGCAATCTTTTGAAACCGAGAGTGCAGCCACCA</left_flank>
        <right_flank>TCTGTCTGTCTCCTCGCTCAGATTTTATCGACTGATATGATAATATCATA</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACAATCCTTATCAAATGTTCGCATCTTCTCCAATTTCGAACACACTCACACTCCTGTTTTCGAGGTCACTCTTGTCCGGTAAACATTGCATAATTGAATAGTCTAAACTTTTCATTTCTTCTAGTGATATCAAAACCCCTCTTTTTCATTTTCATGCCTTTTCCCGTCTAATTTGGATCAAGTTACATTTGGAAAATTGATAGTTTTGGATGTGCCAGAATACGAGGAAAACATAACAAGCCTCTTTTTTTGACTACTCCAACCTCAAATAAAATGTATAGATGCAATTTTATTATCTGTTCGTAAGAGACCAAAAATCGTAATTAATGAGTTTACTTTCGTTTTTCTTGAAGGTTAAAAAGGTGAAGTCCTCGTGTCCAGATGTTTGAAATATCGAAATTTCGAAATACTTCCTATGCCTTGAACGGACGTTTCATGTGATATGAAACATTCCCAATCAGTAGCAGCAATCTTTTGAAACCGAGAGTGCAGCCACCAATCTGTCTGTCTCCTCGCTCAGATTTTATCGACTGATATGATAATATCATATAATGATCGGTGTTCACAGCGCATGGCTATCGAGTTTGCCGAATTTTTCGGCACCATAGCTCAGCTGGTAGCAACACGGCACCCTAACGGCGAGCCAACACTATCAACTTCTCGAAAAAAAAAACCTTTTCAACTTTAAGCTCAATGATTACAATTTCTGTAAAAGATGCAAGAGAACTGTTGATTCTTGAATTGTTTTGTTACATTATCAGAAACATTTTATCAGTTGAACATTTTTTGAAATCTCTCATAGAAACTGAGATAATTGAGCTCAAAATAAAAGTAAAGAGCGGGCATTTGTGTTTCTCGTCAAAATAATTTAAAATATATCGAAAATACCACATGAGAGCCAAATTTTCTGTTCCTTTGTTCTTGGAAATTAAATATATTTTTATCATAATTTATGTAGAGTTTTAGAATACTTCGAACGAACTAGATGAATTCTTTCCT</canonical>
            <polymorphic>GACAATCCTTATCAAATGTTCGCATCTTCTCCAATTTCGAACACACTCACACTCCTGTTTTCGAGGTCACTCTTGTCCGGTAAACATTGCATAATTGAATAGTCTAAACTTTTCATTTCTTCTAGTGATATCAAAACCCCTCTTTTTCATTTTCATGCCTTTTCCCGTCTAATTTGGATCAAGTTACATTTGGAAAATTGATAGTTTTGGATGTGCCAGAATACGAGGAAAACATAACAAGCCTCTTTTTTTGACTACTCCAACCTCAAATAAAATGTATAGATGCAATTTTATTATCTGTTCGTAAGAGACCAAAAATCGTAATTAATGAGTTTACTTTCGTTTTTCTTGAAGGTTAAAAAGGTGAAGTCCTCGTGTCCAGATGTTTGAAATATCGAAATTTCGAAATACTTCCTATGCCTTGAACGGACGTTTCATGTGATATGAAACATTCCCAATCAGTAGCAGCAATCTTTTGAAACCGAGAGTGCAGCCACCAMTCTGTCTGTCTCCTCGCTCAGATTTTATCGACTGATATGATAATATCATATAATGATCGGTGTTCACAGCGCATGGCTATCGAGTTTGCCGAATTTTTCGGCACCATAGCTCAGCTGGTAGCAACACGGCACCCTAACGGCGAGCCAACACTATCAACTTCTCGAAAAAAAAAACCTTTTCAACTTTAAGCTCAATGATTACAATTTCTGTAAAAGATGCAAGAGAACTGTTGATTCTTGAATTGTTTTGTTACATTATCAGAAACATTTTATCAGTTGAACATTTTTTGAAATCTCTCATAGAAACTGAGATAATTGAGCTCAAAATAAAAGTAAAGAGCGGGCATTTGTGTTTCTCGTCAAAATAATTTAAAATATATCGAAAATACCACATGAGAGCCAAATTTTCTGTTCCTTTGTTCTTGGAAATTAAATATATTTTTATCATAATTTATGTAGAGTTTTAGAATACTTCGAACGAACTAGATGAATTCTTTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTGTCCAGATGTTTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTTGCTACCAGCTGAGCTAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGTGTCCAGATGTTTGAAATATCGAAATTTCGAAATACTTCCTATGCCTTGAACGGACGTTTCATGTGATATGAAACATTCCCAATCAGTAGCAGCAATCTTTTGAAACCGAGAGTGCAGCCACCAATCTGTCTGTCTCCTCGCTCAGATTTTATCGACTGATATGATAATATCATATAATGATCGGTGTTCACAGCGCATGGCTATCGAGTTTGCCGAATTTTTCGGCACCATAGCTCAGCTGGTAGCAAC</canonical_amplicon>
		<polymorphic_amplicon>CGTGTCCAGATGTTTGAAATATCGAAATTTCGAAATACTTCCTATGCCTTGAACGGACGTTTCATGTGATATGAAACATTCCCAATCAGTAGCAGCAATCTTTTGAAACCGAGAGTGCAGCCACCAMTCTGTCTGTCTCCTCGCTCAGATTTTATCGACTGATATGATAATATCATATAATGATCGGTGTTCACAGCGCATGGCTATCGAGTTTGCCGAATTTTTCGGCACCATAGCTCAGCTGGTAGCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27879</snp_id>
        <super_contig>c003300939.Contig1</super_contig>
        <contig_pos>31609</contig_pos>
        <strand></strand>
        <context>gttgattctt[G/A]aattrttttg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GCTCAATGATTACAATTTCTGTAAAAGATGCAAGAGAACTGTTGATTCTT</left_flank>
        <right_flank>AATTGTTTTGTTACATTATCAGAAACATTTTATCAGTTGAACATTTTTTG</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCTCTTTTTTTGACTACTCCAACCTCAAATAAAATGTATAGATGCAATTTTATTATCTGTTCGTAAGAGACCAAAAATCGTAATTAATGAGTTTACTTTCGTTTTTCTTGAAGGTTAAAAAGGTGAAGTCCTCGTGTCCAGATGTTTGAAATATCGAAATTTCGAAATACTTCCTATGCCTTGAACGGACGTTTCATGTGATATGAAACATTCCCAATCAGTAGCAGCAATCTTTTGAAACCGAGAGTGCAGCCACCAATCTGTCTGTCTCCTCGCTCAGATTTTATCGACTGATATGATAATATCATATAATGATCGGTGTTCACAGCGCATGGCTATCGAGTTTGCCGAATTTTTCGGCACCATAGCTCAGCTGGTAGCAACACGGCACCCTAACGGCGAGCCAACACTATCAACTTCTCGAAAAAAAAAACCTTTTCAACTTTAAGCTCAATGATTACAATTTCTGTAAAAGATGCAAGAGAACTGTTGATTCTTGAATTGTTTTGTTACATTATCAGAAACATTTTATCAGTTGAACATTTTTTGAAATCTCTCATAGAAACTGAGATAATTGAGCTCAAAATAAAAGTAAAGAGCGGGCATTTGTGTTTCTCGTCAAAATAATTTAAAATATATCGAAAATACCACATGAGAGCCAAATTTTCTGTTCCTTTGTTCTTGGAAATTAAATATATTTTTATCATAATTTATGTAGAGTTTTAGAATACTTCGAACGAACTAGATGAATTCTTTCCTTGAAAAACGCAAGAGATGTCTTCTAAATATTCCATAATCCCTGTCAAAATGTCATTTCCAAATCCTGTTCTTATTAGTATAAGAGTTCACTTTTAATACGACTACTACTTGCTCTTCAATTCTATATTCTTCGTCTTCTTCTTCTTTTCTTTCTTCTTGTCACTTCCAGGCAATTCCCTAATGCATTCCCTCACCTCTTTTTGCCCTTCGCCCATTCCTCCATCTCAACCAATTTCGTTC</canonical>
            <polymorphic>GCCTCTTTTTTTGACTACTCCAACCTCAAATAAAATGTATAGATGCAATTTTATTATCTGTTCGTAAGAGACCAAAAATCGTAATTAATGAGTTTACTTTCGTTTTTCTTGAAGGTTAAAAAGGTGAAGTCCTCGTGTCCAGATGTTTGAAATATCGAAATTTCGAAATACTTCCTATGCCTTGAACGGACGTTTCATGTGATATGAAACATTCCCAATCAGTAGCAGCAATCTTTTGAAACCGAGAGTGCAGCCACCAATCTGTCTGTCTCCTCGCTCAGATTTTATCGACTGATATGATAATATCATATAATGATCGGTGTTCACAGCGCATGGCTATCGAGTTTGCCGAATTTTTCGGCACCATAGCTCAGCTGGTAGCAACACGGCACCCTAACGGCGAGCCAACACTATCAACTTCTCGAAAAAAAAAACCTTTTCAACTTTAAGCTCAATGATTACAATTTCTGTAAAAGATGCAAGAGAACTGTTGATTCTTRAATTGTTTTGTTACATTATCAGAAACATTTTATCAGTTGAACATTTTTTGAAATCTCTCATAGAAACTGAGATAATTGAGCTCAAAATAAAAGTAAAGAGCGGGCATTTGTGTTTCTCGTCAAAATAATTTAAAATATATCGAAAATACCACATGAGAGCCAAATTTTCTGTTCCTTTGTTCTTGGAAATTAAATATATTTTTATCATAATTTATGTAGAGTTTTAGAATACTTCGAACGAACTAGATGAATTCTTTCCTTGAAAAACGCAAGAGATGTCTTCTAAATATTCCATAATCCCTGTCAAAATGTCATTTCCAAATCCTGTTCTTATTAGTATAAGAGTTCACTTTTAATACGACTACTACTTGCTCTTCAATTCTATATTCTTCGTCTTCTTCTTCTTTTCTTTCTTCTTGTCACTTCCAGGCAATTCCCTAATGCATTCCCTCACCTCTTTTTGCCCTTCGCCCATTCCTCCATCTCAACCAATTTCGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>503 282 108 76 31</canonical_bands>
                <polymorphic_bands>579 282 108 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGCCAACACTATCAACTTCTC</pcr_primer_p1>
		<pcr_primer_p2>CATGTGGTATTTTCGATATATTTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GAGCCAACACTATCAACTTCTCGAAAAAAAAAACCTTTTCAACTTTAAGCTCAATGATTACAATTTCTGTAAAAGATGCAAGAGAACTGTTGATTCTTGAATTGTTTTGTTACATTATCAGAAACATTTTATCAGTTGAACATTTTTTGAAATCTCTCATAGAAACTGAGATAATTGAGCTCAAAATAAAAGTAAAGAGCGGGCATTTGTGTTTCTCGTCAAAATAATTTAAAATATATCGAAAATACCACATG</canonical_amplicon>
		<polymorphic_amplicon>GAGCCAACACTATCAACTTCTCGAAAAAAAAAACCTTTTCAACTTTAAGCTCAATGATTACAATTTCTGTAAAAGATGCAAGAGAACTGTTGATTCTTRAATTGTTTTGTTACATTATCAGAAACATTTTATCAGTTGAACATTTTTTGAAATCTCTCATAGAAACTGAGATAATTGAGCTCAAAATAAAAGTAAAGAGCGGGCATTTGTGTTTCTCGTCAAAATAATTTAAAATATATCGAAAATACCACATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27880</snp_id>
        <super_contig>c003300939.Contig1</super_contig>
        <contig_pos>31614</contig_pos>
        <strand></strand>
        <context>ttcttraatt[G/A]ttttgytaca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATGATTACAATTTCTGTAAAAGATGCAAGAGAACTGTTGATTCTTGAATT</left_flank>
        <right_flank>TTTTGTTACATTATCAGAAACATTTTATCAGTTGAACATTTTTTGAAATC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTGACTACTCCAACCTCAAATAAAATGTATAGATGCAATTTTATTATCTGTTCGTAAGAGACCAAAAATCGTAATTAATGAGTTTACTTTCGTTTTTCTTGAAGGTTAAAAAGGTGAAGTCCTCGTGTCCAGATGTTTGAAATATCGAAATTTCGAAATACTTCCTATGCCTTGAACGGACGTTTCATGTGATATGAAACATTCCCAATCAGTAGCAGCAATCTTTTGAAACCGAGAGTGCAGCCACCAATCTGTCTGTCTCCTCGCTCAGATTTTATCGACTGATATGATAATATCATATAATGATCGGTGTTCACAGCGCATGGCTATCGAGTTTGCCGAATTTTTCGGCACCATAGCTCAGCTGGTAGCAACACGGCACCCTAACGGCGAGCCAACACTATCAACTTCTCGAAAAAAAAAACCTTTTCAACTTTAAGCTCAATGATTACAATTTCTGTAAAAGATGCAAGAGAACTGTTGATTCTTGAATTGTTTTGTTACATTATCAGAAACATTTTATCAGTTGAACATTTTTTGAAATCTCTCATAGAAACTGAGATAATTGAGCTCAAAATAAAAGTAAAGAGCGGGCATTTGTGTTTCTCGTCAAAATAATTTAAAATATATCGAAAATACCACATGAGAGCCAAATTTTCTGTTCCTTTGTTCTTGGAAATTAAATATATTTTTATCATAATTTATGTAGAGTTTTAGAATACTTCGAACGAACTAGATGAATTCTTTCCTTGAAAAACGCAAGAGATGTCTTCTAAATATTCCATAATCCCTGTCAAAATGTCATTTCCAAATCCTGTTCTTATTAGTATAAGAGTTCACTTTTAATACGACTACTACTTGCTCTTCAATTCTATATTCTTCGTCTTCTTCTTCTTTTCTTTCTTCTTGTCACTTCCAGGCAATTCCCTAATGCATTCCCTCACCTCTTTTTGCCCTTCGCCCATTCCTCCATCTCAACCAATTTCGTTCTCAAA</canonical>
            <polymorphic>TTTTTTTGACTACTCCAACCTCAAATAAAATGTATAGATGCAATTTTATTATCTGTTCGTAAGAGACCAAAAATCGTAATTAATGAGTTTACTTTCGTTTTTCTTGAAGGTTAAAAAGGTGAAGTCCTCGTGTCCAGATGTTTGAAATATCGAAATTTCGAAATACTTCCTATGCCTTGAACGGACGTTTCATGTGATATGAAACATTCCCAATCAGTAGCAGCAATCTTTTGAAACCGAGAGTGCAGCCACCAATCTGTCTGTCTCCTCGCTCAGATTTTATCGACTGATATGATAATATCATATAATGATCGGTGTTCACAGCGCATGGCTATCGAGTTTGCCGAATTTTTCGGCACCATAGCTCAGCTGGTAGCAACACGGCACCCTAACGGCGAGCCAACACTATCAACTTCTCGAAAAAAAAAACCTTTTCAACTTTAAGCTCAATGATTACAATTTCTGTAAAAGATGCAAGAGAACTGTTGATTCTTGAATTRTTTTGTTACATTATCAGAAACATTTTATCAGTTGAACATTTTTTGAAATCTCTCATAGAAACTGAGATAATTGAGCTCAAAATAAAAGTAAAGAGCGGGCATTTGTGTTTCTCGTCAAAATAATTTAAAATATATCGAAAATACCACATGAGAGCCAAATTTTCTGTTCCTTTGTTCTTGGAAATTAAATATATTTTTATCATAATTTATGTAGAGTTTTAGAATACTTCGAACGAACTAGATGAATTCTTTCCTTGAAAAACGCAAGAGATGTCTTCTAAATATTCCATAATCCCTGTCAAAATGTCATTTCCAAATCCTGTTCTTATTAGTATAAGAGTTCACTTTTAATACGACTACTACTTGCTCTTCAATTCTATATTCTTCGTCTTCTTCTTCTTTTCTTTCTTCTTGTCACTTCCAGGCAATTCCCTAATGCATTCCCTCACCTCTTTTTGCCCTTCGCCCATTCCTCCATCTCAACCAATTTCGTTCTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCCAACACTATCAACTTCTC</pcr_primer_p1>
		<pcr_primer_p2>CATGTGGTATTTTCGATATATTTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GAGCCAACACTATCAACTTCTCGAAAAAAAAAACCTTTTCAACTTTAAGCTCAATGATTACAATTTCTGTAAAAGATGCAAGAGAACTGTTGATTCTTGAATTGTTTTGTTACATTATCAGAAACATTTTATCAGTTGAACATTTTTTGAAATCTCTCATAGAAACTGAGATAATTGAGCTCAAAATAAAAGTAAAGAGCGGGCATTTGTGTTTCTCGTCAAAATAATTTAAAATATATCGAAAATACCACATG</canonical_amplicon>
		<polymorphic_amplicon>GAGCCAACACTATCAACTTCTCGAAAAAAAAAACCTTTTCAACTTTAAGCTCAATGATTACAATTTCTGTAAAAGATGCAAGAGAACTGTTGATTCTTGAATTRTTTTGTTACATTATCAGAAACATTTTATCAGTTGAACATTTTTTGAAATCTCTCATAGAAACTGAGATAATTGAGCTCAAAATAAAAGTAAAGAGCGGGCATTTGTGTTTCTCGTCAAAATAATTTAAAATATATCGAAAATACCACATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27881</snp_id>
        <super_contig>c003300939.Contig1</super_contig>
        <contig_pos>31620</contig_pos>
        <strand></strand>
        <context>aattrttttg[T/C]tacattatca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACAATTTCTGTAAAAGATGCAAGAGAACTGTTGATTCTTGAATTGTTTTG</left_flank>
        <right_flank>TACATTATCAGAAACATTTTATCAGTTGAACATTTTTTGAAATCTCTCAT</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACTACTCCAACCTCAAATAAAATGTATAGATGCAATTTTATTATCTGTTCGTAAGAGACCAAAAATCGTAATTAATGAGTTTACTTTCGTTTTTCTTGAAGGTTAAAAAGGTGAAGTCCTCGTGTCCAGATGTTTGAAATATCGAAATTTCGAAATACTTCCTATGCCTTGAACGGACGTTTCATGTGATATGAAACATTCCCAATCAGTAGCAGCAATCTTTTGAAACCGAGAGTGCAGCCACCAATCTGTCTGTCTCCTCGCTCAGATTTTATCGACTGATATGATAATATCATATAATGATCGGTGTTCACAGCGCATGGCTATCGAGTTTGCCGAATTTTTCGGCACCATAGCTCAGCTGGTAGCAACACGGCACCCTAACGGCGAGCCAACACTATCAACTTCTCGAAAAAAAAAACCTTTTCAACTTTAAGCTCAATGATTACAATTTCTGTAAAAGATGCAAGAGAACTGTTGATTCTTGAATTGTTTTGTTACATTATCAGAAACATTTTATCAGTTGAACATTTTTTGAAATCTCTCATAGAAACTGAGATAATTGAGCTCAAAATAAAAGTAAAGAGCGGGCATTTGTGTTTCTCGTCAAAATAATTTAAAATATATCGAAAATACCACATGAGAGCCAAATTTTCTGTTCCTTTGTTCTTGGAAATTAAATATATTTTTATCATAATTTATGTAGAGTTTTAGAATACTTCGAACGAACTAGATGAATTCTTTCCTTGAAAAACGCAAGAGATGTCTTCTAAATATTCCATAATCCCTGTCAAAATGTCATTTCCAAATCCTGTTCTTATTAGTATAAGAGTTCACTTTTAATACGACTACTACTTGCTCTTCAATTCTATATTCTTCGTCTTCTTCTTCTTTTCTTTCTTCTTGTCACTTCCAGGCAATTCCCTAATGCATTCCCTCACCTCTTTTTGCCCTTCGCCCATTCCTCCATCTCAACCAATTTCGTTCTCAAATCGAAT</canonical>
            <polymorphic>TGACTACTCCAACCTCAAATAAAATGTATAGATGCAATTTTATTATCTGTTCGTAAGAGACCAAAAATCGTAATTAATGAGTTTACTTTCGTTTTTCTTGAAGGTTAAAAAGGTGAAGTCCTCGTGTCCAGATGTTTGAAATATCGAAATTTCGAAATACTTCCTATGCCTTGAACGGACGTTTCATGTGATATGAAACATTCCCAATCAGTAGCAGCAATCTTTTGAAACCGAGAGTGCAGCCACCAATCTGTCTGTCTCCTCGCTCAGATTTTATCGACTGATATGATAATATCATATAATGATCGGTGTTCACAGCGCATGGCTATCGAGTTTGCCGAATTTTTCGGCACCATAGCTCAGCTGGTAGCAACACGGCACCCTAACGGCGAGCCAACACTATCAACTTCTCGAAAAAAAAAACCTTTTCAACTTTAAGCTCAATGATTACAATTTCTGTAAAAGATGCAAGAGAACTGTTGATTCTTGAATTGTTTTGYTACATTATCAGAAACATTTTATCAGTTGAACATTTTTTGAAATCTCTCATAGAAACTGAGATAATTGAGCTCAAAATAAAAGTAAAGAGCGGGCATTTGTGTTTCTCGTCAAAATAATTTAAAATATATCGAAAATACCACATGAGAGCCAAATTTTCTGTTCCTTTGTTCTTGGAAATTAAATATATTTTTATCATAATTTATGTAGAGTTTTAGAATACTTCGAACGAACTAGATGAATTCTTTCCTTGAAAAACGCAAGAGATGTCTTCTAAATATTCCATAATCCCTGTCAAAATGTCATTTCCAAATCCTGTTCTTATTAGTATAAGAGTTCACTTTTAATACGACTACTACTTGCTCTTCAATTCTATATTCTTCGTCTTCTTCTTCTTTTCTTTCTTCTTGTCACTTCCAGGCAATTCCCTAATGCATTCCCTCACCTCTTTTTGCCCTTCGCCCATTCCTCCATCTCAACCAATTTCGTTCTCAAATCGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>498 409 93</canonical_bands>
                <polymorphic_bands>907 93</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGCCAACACTATCAACTTCTC</pcr_primer_p1>
		<pcr_primer_p2>CATGTGGTATTTTCGATATATTTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GAGCCAACACTATCAACTTCTCGAAAAAAAAAACCTTTTCAACTTTAAGCTCAATGATTACAATTTCTGTAAAAGATGCAAGAGAACTGTTGATTCTTGAATTGTTTTGTTACATTATCAGAAACATTTTATCAGTTGAACATTTTTTGAAATCTCTCATAGAAACTGAGATAATTGAGCTCAAAATAAAAGTAAAGAGCGGGCATTTGTGTTTCTCGTCAAAATAATTTAAAATATATCGAAAATACCACATG</canonical_amplicon>
		<polymorphic_amplicon>GAGCCAACACTATCAACTTCTCGAAAAAAAAAACCTTTTCAACTTTAAGCTCAATGATTACAATTTCTGTAAAAGATGCAAGAGAACTGTTGATTCTTGAATTGTTTTGYTACATTATCAGAAACATTTTATCAGTTGAACATTTTTTGAAATCTCTCATAGAAACTGAGATAATTGAGCTCAAAATAAAAGTAAAGAGCGGGCATTTGTGTTTCTCGTCAAAATAATTTAAAATATATCGAAAATACCACATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27882</snp_id>
        <super_contig>c003300939.Contig1</super_contig>
        <contig_pos>80830</contig_pos>
        <strand>+</strand>
        <context>TTTGACRACG[G/T]GCGACGTCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCCAGAGAACCGCCCATACTTACGCGAAGAATTGCAGTTTTTTGACAACG</left_flank>
        <right_flank>GCGACGTCCTCCTACACCACCCGGAGCCATCACAAATATGCACAAAAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGGGACAGACTTCTGACCAGATGAAAGGGGAGGAGCAAGGAACTATAAGTAAAAATGGAAACTGAAACAATCAAGAGCGATTCAGATGGTATGATAAAAATTGAAAAAAAAATTGTTCTTGAATTTGTGGTAAGTAAATATGTATCTTATTCAGAACTTTGAGGCTTTGTAGTAAGAGTATATATTGTTAAAAGATGTTCGTATGGCTTCTTCTTTCTTCTTTTTTCATCTCCTAACTAAAAACAGCCCGGAAAAAAGAAGGAAACGAAAAAACAAATGAAAACGTTTGAAATTCGGTGTGTGGTTTTGGGTGTGTGGGGGTGGAAGGGTTAGAAGAGAAGAGGGTGCTAAACCCCACTATTTTTCGCCTCCGTTTCCGTTTTTTTCCAGTTTTGCTACAAAACGTTATCTGGACAGACGGATGGCGTCGGGGGCCGTTCATCACCTCGCCAGAGAACCGCCCATACTTACGCGAAGAATTGCAGTTTTTTGACAACGGGCGACGTCCTCCTACACCACCCGGAGCCATCACAAATATGCACAAAAACTCGAGTTTTTTTTTCTATTTTTCCTTTTTTTTTTTCGTCACCAAAAATTTTTGTCGAAAAAAAAACGGAGCCTCGCCCGAGATGGAGAGGAAGAAAAAAAATAATGAGCGACGTGTGGGAGATTAGTTGTTCGCGAAGGAAGAAAAAGAAAATGGAAGATGAGGGAAAGAGATTGATGTTCAATTTTCACATCTTCACATGTTTCTGGAAATCCAATTGAGGAACCATAAAATAAGATAAAAAAGTTTTAAGTTCATTTTAATCCTAAAACTTTTTTGCGTAAAATGTTGCCGGAGAGTTGTGTGAAAAAGAAAAAAAGAAGAAGCATTCGAGAGGAAAACGAAGAAAGAAAAGGGGAAAGAAAAGACGAAAATTCGGAAAAGCCGGGGACCAGCAGGCGACCCAGTCAGTGAGGGGGAGAATTTTAAAACAGGACGGCCGGCGGAGAGCA</canonical>
            <polymorphic>AGGGGACAGACTTCTGACCAGATGAAAGGGGAGGAGCAAGGAACTATAAGTAAAAATGGAAACTGAAACAATCAAGAGCGATTCAGATGGTATGATAAAAATTGAAAAAAAAATTGTTCTTGAATTTGTGGTAAGTAAATATGTATCTTATTCAGAACTTTGAGGCTTTGTAGTAAGAGTATATATTGTTAAAAGATGTTCGTATGGCTTCTTCTTTCTTCTTTTTTCATCTCCTAACTAAAAACAGCCCGGAAAAAAGAAGGAAACGAAAAAACAAATGAAAACGTTTGAAATTCGGTGTGTGGTTTTGGGTGTGTGGGGGTGGAAGGGTTAGAAGAGAAGAGGGTGCTAAACCCCACTATTTTTCGCCTCCGTTTCCGTTTTTTTCCAGTTTTGCTACAAAACGTTATCTGGACAGACGGATGGCGTCGGGGGCCGTTCATCACCTCGCCAGAGAACCGCCCATACTTACGCGAAGAATTGCAGTTTTTTGACAACGKGCGACGTCCTCCTACACCACCCGGAGCCATCACAAATATGCACAAAAACTCGAGTTTTTTTTTCTATTTTTCCTTTTTTTTTTTCGTCACCAAAAATTTTTGTCGAAAAAAAAACGGAGCCTCGCCCGAGATGGAGAGGAAGAAAAAAAATAATGAGCGACGTGTGGGAGATTAGTTGTTCGCGAAGGAAGAAAAAGAAAATGGAAGATGAGGGAAAGAGATTGATGTTCAATTTTCACATCTTCACATGTTTCTGGAAATCCAATTGAGGAACCATAAAATAAGATAAAAAAGTTTTAAGTTCATTTTAATCCTAAAACTTTTTTGCGTAAAATGTTGCCGGAGAGTTGTGTGAAAAAGAAAAAAAGAAGAAGCATTCGAGAGGAAAACGAAGAAAGAAAAGGGGAAAGAAAAGACGAAAATTCGGAAAAGCCGGGGACCAGCAGGCGACCCAGTCAGTGAGGGGGAGAATTTTAAAACAGGACGGCCGGCGGAGAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTAGAAGAGAAGAGGGTGCTAA</pcr_primer_p1>
		<pcr_primer_p2>ACTCGAGTTTTTGTGCATATTT</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>GTTAGAAGAGAAGAGGGTGCTAAACCCCACTATTTTTCGCCTCCGTTTCCGTTTTTTTCCAGTTTTGCTACAAAACGTTATCTGGACAGACGGATGGCGTCGGGGGCCGTTCATCACCTCGCCAGAGAACCGCCCATACTTACGCGAAGAATTGCAGTTTTTTGACAACGGGCGACGTCCTCCTACACCACCCGGAGCCATCACAAATATGCACAAAAACTCGAGT</canonical_amplicon>
		<polymorphic_amplicon>GTTAGAAGAGAAGAGGGTGCTAAACCCCACTATTTTTCGCCTCCGTTTCCGTTTTTTTCCAGTTTTGCTACAAAACGTTATCTGGACAGACGGATGGCGTCGGGGGCCGTTCATCACCTCGCCAGAGAACCGCCCATACTTACGCGAAGAATTGCAGTTTTTTGACAACGKGCGACGTCCTCCTACACCACCCGGAGCCATCACAAATATGCACAAAAACTCGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27883</snp_id>
        <super_contig>c003300939.Contig1</super_contig>
        <contig_pos>140249</contig_pos>
        <strand>+</strand>
        <context>TTCTTTGGCA[C/G]AASAACGGCT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTGTTTGGAAGAAGGTTCTTATTCCTTGTCTCCTCCGGTCTTCTTTGGCA</left_flank>
        <right_flank>AAGAACGGCTTGGATGTTTGGAAGAACTCCTCCTTGAGCGATCGTGACTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTAACTTTTCTTTTCTTTTTTCTCAACTCATTTCTTCAGATCCCTCGGCTATGCAATGGGAATATGCCAGCGAATGAGAGCATAAGTTTTCACCAAATAGGAAGCCGTTAATAATTTATTTTTTCCAATCCCCAATCTTCAATAACTCATCCCTATTTATTGCTCCAAGAATACCTTTCTCTGAACGAGGACCGTCAATTGTTCAGGGTACACCGGTTCTCAATCACTTCTCTCGCATCCTCACCATACCATTTTGTTTCGCCTGTCGATTATTAACAGTATTTCCATTTGAGTTCTGATGAACATATAGAATTCGATAAAAAGTTTATATTCTTGTATATTATTGTATGAAGTAGTCTGAAAGTAAGAAAAGATAATTTGGTTTATTCAATTAAAATTTGGATTTCGAATCTGTGGCCCTAAAGAGGGCCGTTGGGTTCGGTGGGGTGTTTGGAAGAAGGTTCTTATTCCTTGTCTCCTCCGGTCTTCTTTGGCAGAAGAACGGCTTGGATGTTTGGAAGAACTCCTCCTTGAGCGATCGTGACTCCGGCCAAAAGCTTGTTCAACTCCTCGTCGTTGCGGACAGCGAGTTGAAGATGTCTTGGTGCGATACGGGTCTTCTTGTTGTCACGGGCAGCGTTACCGGCCAACTCGAGAACTTCAGCAGCGAGGTACTCAAGGACAGCGGCCAAGTAGACTGGGGCTCCGGCTCCGACGCGTTGAGCGTAGTTTCCTTTGCGAAGAATACGGTGAAGACGACCGACTGGGAATTGAAGTCCAGCTCTTGACGAGCGTGACTTGGCCTTTCCTCCGGTCTTGGCTTTGCCTCCCTTTCCACGTCCAGACATTGTTGTTTGATGAGCGATTTAGGTCGTAAACGAACTTAAGAAAGATGGGTAGTGGGAGCTTTATATACGTGAGGGCGCGGTGGAAAGGCGGGGTGACCTTCGCCGTTAACCACCCTGCGGGGACACATGCTTCGTCTATGCGCGCACAC</canonical>
            <polymorphic>AATTTAACTTTTCTTTTCTTTTTTCTCAACTCATTTCTTCAGATCCCTCGGCTATGCAATGGGAATATGCCAGCGAATGAGAGCATAAGTTTTCACCAAATAGGAAGCCGTTAATAATTTATTTTTTCCAATCCCCAATCTTCAATAACTCATCCCTATTTATTGCTCCAAGAATACCTTTCTCTGAACGAGGACCGTCAATTGTTCAGGGTACACCGGTTCTCAATCACTTCTCTCGCATCCTCACCATACCATTTTGTTTCGCCTGTCGATTATTAACAGTATTTCCATTTGAGTTCTGATGAACATATAGAATTCGATAAAAAGTTTATATTCTTGTATATTATTGTATGAAGTAGTCTGAAAGTAAGAAAAGATAATTTGGTTTATTCAATTAAAATTTGGATTTCGAATCTGTGGCCCTAAAGAGGGCCGTTGGGTTCGGTGGGGTGTTTGGAAGAAGGTTCTTATTCCTTGTCTCCTCCGGTCTTCTTTGGCASAAGAACGGCTTGGATGTTTGGAAGAACTCCTCCTTGAGCGATCGTGACTCCGGCCAAAAGCTTGTTCAACTCCTCGTCGTTGCGGACAGCGAGTTGAAGATGTCTTGGTGCGATACGGGTCTTCTTGTTGTCACGGGCAGCGTTACCGGCCAACTCGAGAACTTCAGCAGCGAGGTACTCAAGGACAGCGGCCAAGTAGACTGGGGCTCCGGCTCCGACGCGTTGAGCGTAGTTTCCTTTGCGAAGAATACGGTGAAGACGACCGACTGGGAATTGAAGTCCAGCTCTTGACGAGCGTGACTTGGCCTTTCCTCCGGTCTTGGCTTTGCCTCCCTTTCCACGTCCAGACATTGTTGTTTGATGAGCGATTTAGGTCGTAAACGAACTTAAGAAAGATGGGTAGTGGGAGCTTTATATACGTGAGGGCGCGGTGGAAAGGCGGGGTGACCTTCGCCGTTAACCACCCTGCGGGGACACATGCTTCGTCTATGCGCGCACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAAAGATAATTTGGTTTATTCA</pcr_primer_p1>
		<pcr_primer_p2>GCACCAAGACATCTTCAACT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAGAAAAGATAATTTGGTTTATTCAATTAAAATTTGGATTTCGAATCTGTGGCCCTAAAGAGGGCCGTTGGGTTCGGTGGGGTGTTTGGAAGAAGGTTCTTATTCCTTGTCTCCTCCGGTCTTCTTTGGCAGAAGAACGGCTTGGATGTTTGGAAGAACTCCTCCTTGAGCGATCGTGACTCCGGCCAAAAGCTTGTTCAACTCCTCGTCGTTGCGGACAGCGAGTTGAAGATGTCTTGGTGC</canonical_amplicon>
		<polymorphic_amplicon>AAGAAAAGATAATTTGGTTTATTCAATTAAAATTTGGATTTCGAATCTGTGGCCCTAAAGAGGGCCGTTGGGTTCGGTGGGGTGTTTGGAAGAAGGTTCTTATTCCTTGTCTCCTCCGGTCTTCTTTGGCASAAGAACGGCTTGGATGTTTGGAAGAACTCCTCCTTGAGCGATCGTGACTCCGGCCAAAAGCTTGTTCAACTCCTCGTCGTTGCGGACAGCGAGTTGAAGATGTCTTGGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27884</snp_id>
        <super_contig>c003300939.Contig1</super_contig>
        <contig_pos>140252</contig_pos>
        <strand>+</strand>
        <context>TTTGGCASAA[C/G]AACGGCTTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTGGAAGAAGGTTCTTATTCCTTGTCTCCTCCGGTCTTCTTTGGCAGAA</left_flank>
        <right_flank>AACGGCTTGGATGTTTGGAAGAACTCCTCCTTGAGCGATCGTGACTCCGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAACTTTTCTTTTCTTTTTTCTCAACTCATTTCTTCAGATCCCTCGGCTATGCAATGGGAATATGCCAGCGAATGAGAGCATAAGTTTTCACCAAATAGGAAGCCGTTAATAATTTATTTTTTCCAATCCCCAATCTTCAATAACTCATCCCTATTTATTGCTCCAAGAATACCTTTCTCTGAACGAGGACCGTCAATTGTTCAGGGTACACCGGTTCTCAATCACTTCTCTCGCATCCTCACCATACCATTTTGTTTCGCCTGTCGATTATTAACAGTATTTCCATTTGAGTTCTGATGAACATATAGAATTCGATAAAAAGTTTATATTCTTGTATATTATTGTATGAAGTAGTCTGAAAGTAAGAAAAGATAATTTGGTTTATTCAATTAAAATTTGGATTTCGAATCTGTGGCCCTAAAGAGGGCCGTTGGGTTCGGTGGGGTGTTTGGAAGAAGGTTCTTATTCCTTGTCTCCTCCGGTCTTCTTTGGCAGAAGAACGGCTTGGATGTTTGGAAGAACTCCTCCTTGAGCGATCGTGACTCCGGCCAAAAGCTTGTTCAACTCCTCGTCGTTGCGGACAGCGAGTTGAAGATGTCTTGGTGCGATACGGGTCTTCTTGTTGTCACGGGCAGCGTTACCGGCCAACTCGAGAACTTCAGCAGCGAGGTACTCAAGGACAGCGGCCAAGTAGACTGGGGCTCCGGCTCCGACGCGTTGAGCGTAGTTTCCTTTGCGAAGAATACGGTGAAGACGACCGACTGGGAATTGAAGTCCAGCTCTTGACGAGCGTGACTTGGCCTTTCCTCCGGTCTTGGCTTTGCCTCCCTTTCCACGTCCAGACATTGTTGTTTGATGAGCGATTTAGGTCGTAAACGAACTTAAGAAAGATGGGTAGTGGGAGCTTTATATACGTGAGGGCGCGGTGGAAAGGCGGGGTGACCTTCGCCGTTAACCACCCTGCGGGGACACATGCTTCGTCTATGCGCGCACACCGA</canonical>
            <polymorphic>TTAACTTTTCTTTTCTTTTTTCTCAACTCATTTCTTCAGATCCCTCGGCTATGCAATGGGAATATGCCAGCGAATGAGAGCATAAGTTTTCACCAAATAGGAAGCCGTTAATAATTTATTTTTTCCAATCCCCAATCTTCAATAACTCATCCCTATTTATTGCTCCAAGAATACCTTTCTCTGAACGAGGACCGTCAATTGTTCAGGGTACACCGGTTCTCAATCACTTCTCTCGCATCCTCACCATACCATTTTGTTTCGCCTGTCGATTATTAACAGTATTTCCATTTGAGTTCTGATGAACATATAGAATTCGATAAAAAGTTTATATTCTTGTATATTATTGTATGAAGTAGTCTGAAAGTAAGAAAAGATAATTTGGTTTATTCAATTAAAATTTGGATTTCGAATCTGTGGCCCTAAAGAGGGCCGTTGGGTTCGGTGGGGTGTTTGGAAGAAGGTTCTTATTCCTTGTCTCCTCCGGTCTTCTTTGGCAGAASAACGGCTTGGATGTTTGGAAGAACTCCTCCTTGAGCGATCGTGACTCCGGCCAAAAGCTTGTTCAACTCCTCGTCGTTGCGGACAGCGAGTTGAAGATGTCTTGGTGCGATACGGGTCTTCTTGTTGTCACGGGCAGCGTTACCGGCCAACTCGAGAACTTCAGCAGCGAGGTACTCAAGGACAGCGGCCAAGTAGACTGGGGCTCCGGCTCCGACGCGTTGAGCGTAGTTTCCTTTGCGAAGAATACGGTGAAGACGACCGACTGGGAATTGAAGTCCAGCTCTTGACGAGCGTGACTTGGCCTTTCCTCCGGTCTTGGCTTTGCCTCCCTTTCCACGTCCAGACATTGTTGTTTGATGAGCGATTTAGGTCGTAAACGAACTTAAGAAAGATGGGTAGTGGGAGCTTTATATACGTGAGGGCGCGGTGGAAAGGCGGGGTGACCTTCGCCGTTAACCACCCTGCGGGGACACATGCTTCGTCTATGCGCGCACACCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAAAGATAATTTGGTTTATTCA</pcr_primer_p1>
		<pcr_primer_p2>GCACCAAGACATCTTCAACT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAGAAAAGATAATTTGGTTTATTCAATTAAAATTTGGATTTCGAATCTGTGGCCCTAAAGAGGGCCGTTGGGTTCGGTGGGGTGTTTGGAAGAAGGTTCTTATTCCTTGTCTCCTCCGGTCTTCTTTGGCAGAAGAACGGCTTGGATGTTTGGAAGAACTCCTCCTTGAGCGATCGTGACTCCGGCCAAAAGCTTGTTCAACTCCTCGTCGTTGCGGACAGCGAGTTGAAGATGTCTTGGTGC</canonical_amplicon>
		<polymorphic_amplicon>AAGAAAAGATAATTTGGTTTATTCAATTAAAATTTGGATTTCGAATCTGTGGCCCTAAAGAGGGCCGTTGGGTTCGGTGGGGTGTTTGGAAGAAGGTTCTTATTCCTTGTCTCCTCCGGTCTTCTTTGGCAGAASAACGGCTTGGATGTTTGGAAGAACTCCTCCTTGAGCGATCGTGACTCCGGCCAAAAGCTTGTTCAACTCCTCGTCGTTGCGGACAGCGAGTTGAAGATGTCTTGGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27885</snp_id>
        <super_contig>c003300953.Contig1</super_contig>
        <contig_pos>825</contig_pos>
        <strand></strand>
        <context>CCCCAGTCAA[C/A]YYCCCCGCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CGCCTTAGGACACCTACGTTACGATTTGATAGATGTACCGCCCCAGTCAA</left_flank>
        <right_flank>TCCCCCGCTTGACACTGTCTTCGAGGAGAGTCACGGTGCCATAAAATGGC</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATAATCTCTCAAATGGTAGCTTCAGACCATTGATCTGTCGATCAAGTCTATGAACCAAATGTTTGAACCCGCTGTTCCTCTCGTACTAAGCAGGATTACTTTCGCAATAACAAGTCAACAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTACCTGAAACAATCAGGATTAAAAGGATCGATAGGCCACGCTTTCGCGGTCTGTACTCGTACTGAAAGTCAAGATCAAGCAAGCTTTTGCCCTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTACGTTACGATTTGATAGATGTACCGCCCCAGTCAACTCCCCCGCTTGACACTGTCTTCGAGGAGAGTCACGGTGCCATAAAATGGCTCCGCTTAATGCTTCGAAAAAAGGCCGTGAAGCCAATTCTCTTTTAACCGAATAAGTAAAGAGTCGATGAAAGTGGTGGTATTTCACCGGCGACCGAAGTCTCCCACCTATGCTACACCTCTCATGACTCTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTATTTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCAACAATTAAATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTACTCGAATTACTACGATTTAACATTCAGAGCACTGGGCAGAAATCAGTGACAGTCAGCGTCCGCAAGGACCATCTGTCACCTCTGTTTTAATTAGACAGTCGGATTCCCTGA</canonical>
            <polymorphic>TTATAATCTCTCAAATGGTAGCTTCAGACCATTGATCTGTCGATCAAGTCTATGAACCAAATGTTTGAACCCGCTGTTCCTCTCGTACTAAGCAGGATTACTTTCGCAATAACAAGTCAACAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTACCTGAAACAATCAGGATTAAAAGGATCGATAGGCCACGCTTTCGCGGTCTGTACTCGTACTGAAAGTCAAGATCAAGCAAGCTTTTGCCCTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTACGTTACGATTTGATAGATGTACCGCCCCAGTCAAMTCCCCCGCTTGACACTGTCTTCGAGGAGAGTCACGGTGCCATAAAATGGCTCCGCTTAATGCTTCGAAAAAAGGCCGTGAAGCCAATTCTCTTTTAACCGAATAAGTAAAGAGTCGATGAAAGTGGTGGTATTTCACCGGCGACCGAAGTCTCCCACCTATGCTACACCTCTCATGACTCTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTATTTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCAACAATTAAATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTACTCGAATTACTACGATTTAACATTCAGAGCACTGGGCAGAAATCAGTGACAGTCAGCGTCCGCAAGGACCATCTGTCACCTCTGTTTTAATTAGACAGTCGGATTCCCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>379 321 182 118</canonical_bands>
                <polymorphic_bands>700 182 118</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>321 311 123 118 68 59</canonical_bands>
                <polymorphic_bands>632 123 118 68 59</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTCTGTACTCGTACTGAAAGTC</pcr_primer_p1>
		<pcr_primer_p2>TCGACTCTTTACTTATTCGGTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTCTGTACTCGTACTGAAAGTCAAGATCAAGCAAGCTTTTGCCCTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTACGTTACGATTTGATAGATGTACCGCCCCAGTCAACTCCCCCGCTTGACACTGTCTTCGAGGAGAGTCACGGTGCCATAAAATGGCTCCGCTTAATGCTTCGAAAAAAGGCCGTGAAGCCAATTCTCTTTTAACCGAATAAGTAAAGAGTCGA</canonical_amplicon>
		<polymorphic_amplicon>GGTCTGTACTCGTACTGAAAGTCAAGATCAAGCAAGCTTTTGCCCTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTACGTTACGATTTGATAGATGTACCGCCCCAGTCAAMTCCCCCGCTTGACACTGTCTTCGAGGAGAGTCACGGTGCCATAAAATGGCTCCGCTTAATGCTTCGAAAAAAGGCCGTGAAGCCAATTCTCTTTTAACCGAATAAGTAAAGAGTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27886</snp_id>
        <super_contig>c003300953.Contig1</super_contig>
        <contig_pos>826</contig_pos>
        <strand></strand>
        <context>CCCAGTCAAM[T/C]YCCCCGCTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCCTTAGGACACCTACGTTACGATTTGATAGATGTACCGCCCCAGTCAAC</left_flank>
        <right_flank>CCCCCGCTTGACACTGTCTTCGAGGAGAGTCACGGTGCCATAAAATGGCT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAATCTCTCAAATGGTAGCTTCAGACCATTGATCTGTCGATCAAGTCTATGAACCAAATGTTTGAACCCGCTGTTCCTCTCGTACTAAGCAGGATTACTTTCGCAATAACAAGTCAACAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTACCTGAAACAATCAGGATTAAAAGGATCGATAGGCCACGCTTTCGCGGTCTGTACTCGTACTGAAAGTCAAGATCAAGCAAGCTTTTGCCCTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTACGTTACGATTTGATAGATGTACCGCCCCAGTCAACTCCCCCGCTTGACACTGTCTTCGAGGAGAGTCACGGTGCCATAAAATGGCTCCGCTTAATGCTTCGAAAAAAGGCCGTGAAGCCAATTCTCTTTTAACCGAATAAGTAAAGAGTCGATGAAAGTGGTGGTATTTCACCGGCGACCGAAGTCTCCCACCTATGCTACACCTCTCATGACTCTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTATTTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCAACAATTAAATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTACTCGAATTACTACGATTTAACATTCAGAGCACTGGGCAGAAATCAGTGACAGTCAGCGTCCGCAAGGACCATCTGTCACCTCTGTTTTAATTAGACAGTCGGATTCCCTGAG</canonical>
            <polymorphic>TATAATCTCTCAAATGGTAGCTTCAGACCATTGATCTGTCGATCAAGTCTATGAACCAAATGTTTGAACCCGCTGTTCCTCTCGTACTAAGCAGGATTACTTTCGCAATAACAAGTCAACAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTACCTGAAACAATCAGGATTAAAAGGATCGATAGGCCACGCTTTCGCGGTCTGTACTCGTACTGAAAGTCAAGATCAAGCAAGCTTTTGCCCTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTACGTTACGATTTGATAGATGTACCGCCCCAGTCAACYCCCCCGCTTGACACTGTCTTCGAGGAGAGTCACGGTGCCATAAAATGGCTCCGCTTAATGCTTCGAAAAAAGGCCGTGAAGCCAATTCTCTTTTAACCGAATAAGTAAAGAGTCGATGAAAGTGGTGGTATTTCACCGGCGACCGAAGTCTCCCACCTATGCTACACCTCTCATGACTCTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTATTTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCAACAATTAAATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTACTCGAATTACTACGATTTAACATTCAGAGCACTGGGCAGAAATCAGTGACAGTCAGCGTCCGCAAGGACCATCTGTCACCTCTGTTTTAATTAGACAGTCGGATTCCCTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCTGTACTCGTACTGAAAGTC</pcr_primer_p1>
		<pcr_primer_p2>TCGACTCTTTACTTATTCGGTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTCTGTACTCGTACTGAAAGTCAAGATCAAGCAAGCTTTTGCCCTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTACGTTACGATTTGATAGATGTACCGCCCCAGTCAACTCCCCCGCTTGACACTGTCTTCGAGGAGAGTCACGGTGCCATAAAATGGCTCCGCTTAATGCTTCGAAAAAAGGCCGTGAAGCCAATTCTCTTTTAACCGAATAAGTAAAGAGTCGA</canonical_amplicon>
		<polymorphic_amplicon>GGTCTGTACTCGTACTGAAAGTCAAGATCAAGCAAGCTTTTGCCCTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTACGTTACGATTTGATAGATGTACCGCCCCAGTCAACYCCCCCGCTTGACACTGTCTTCGAGGAGAGTCACGGTGCCATAAAATGGCTCCGCTTAATGCTTCGAAAAAAGGCCGTGAAGCCAATTCTCTTTTAACCGAATAAGTAAAGAGTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27887</snp_id>
        <super_contig>c003300953.Contig1</super_contig>
        <contig_pos>827</contig_pos>
        <strand></strand>
        <context>CCAGTCAAMY[C/T]CCCCGCTTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTTAGGACACCTACGTTACGATTTGATAGATGTACCGCCCCAGTCAACT</left_flank>
        <right_flank>CCCCGCTTGACACTGTCTTCGAGGAGAGTCACGGTGCCATAAAATGGCTC</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAATCTCTCAAATGGTAGCTTCAGACCATTGATCTGTCGATCAAGTCTATGAACCAAATGTTTGAACCCGCTGTTCCTCTCGTACTAAGCAGGATTACTTTCGCAATAACAAGTCAACAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTACCTGAAACAATCAGGATTAAAAGGATCGATAGGCCACGCTTTCGCGGTCTGTACTCGTACTGAAAGTCAAGATCAAGCAAGCTTTTGCCCTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTACGTTACGATTTGATAGATGTACCGCCCCAGTCAACTCCCCCGCTTGACACTGTCTTCGAGGAGAGTCACGGTGCCATAAAATGGCTCCGCTTAATGCTTCGAAAAAAGGCCGTGAAGCCAATTCTCTTTTAACCGAATAAGTAAAGAGTCGATGAAAGTGGTGGTATTTCACCGGCGACCGAAGTCTCCCACCTATGCTACACCTCTCATGACTCTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTATTTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCAACAATTAAATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTACTCGAATTACTACGATTTAACATTCAGAGCACTGGGCAGAAATCAGTGACAGTCAGCGTCCGCAAGGACCATCTGTCACCTCTGTTTTAATTAGACAGTCGGATTCCCTGAGT</canonical>
            <polymorphic>ATAATCTCTCAAATGGTAGCTTCAGACCATTGATCTGTCGATCAAGTCTATGAACCAAATGTTTGAACCCGCTGTTCCTCTCGTACTAAGCAGGATTACTTTCGCAATAACAAGTCAACAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTACCTGAAACAATCAGGATTAAAAGGATCGATAGGCCACGCTTTCGCGGTCTGTACTCGTACTGAAAGTCAAGATCAAGCAAGCTTTTGCCCTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTACGTTACGATTTGATAGATGTACCGCCCCAGTCAACTYCCCCGCTTGACACTGTCTTCGAGGAGAGTCACGGTGCCATAAAATGGCTCCGCTTAATGCTTCGAAAAAAGGCCGTGAAGCCAATTCTCTTTTAACCGAATAAGTAAAGAGTCGATGAAAGTGGTGGTATTTCACCGGCGACCGAAGTCTCCCACCTATGCTACACCTCTCATGACTCTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTATTTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCAACAATTAAATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTACTCGAATTACTACGATTTAACATTCAGAGCACTGGGCAGAAATCAGTGACAGTCAGCGTCCGCAAGGACCATCTGTCACCTCTGTTTTAATTAGACAGTCGGATTCCCTGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCTGTACTCGTACTGAAAGTC</pcr_primer_p1>
		<pcr_primer_p2>TCGACTCTTTACTTATTCGGTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTCTGTACTCGTACTGAAAGTCAAGATCAAGCAAGCTTTTGCCCTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTACGTTACGATTTGATAGATGTACCGCCCCAGTCAACTCCCCCGCTTGACACTGTCTTCGAGGAGAGTCACGGTGCCATAAAATGGCTCCGCTTAATGCTTCGAAAAAAGGCCGTGAAGCCAATTCTCTTTTAACCGAATAAGTAAAGAGTCGA</canonical_amplicon>
		<polymorphic_amplicon>GGTCTGTACTCGTACTGAAAGTCAAGATCAAGCAAGCTTTTGCCCTTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTACGTTACGATTTGATAGATGTACCGCCCCAGTCAACTYCCCCGCTTGACACTGTCTTCGAGGAGAGTCACGGTGCCATAAAATGGCTCCGCTTAATGCTTCGAAAAAAGGCCGTGAAGCCAATTCTCTTTTAACCGAATAAGTAAAGAGTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27888</snp_id>
        <super_contig>c003300953.Contig1</super_contig>
        <contig_pos>1386</contig_pos>
        <strand>+</strand>
        <context>AACCGAGGTC[C/T]TAGCACACAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTCCAGTACGGTTGTTTAGATGAGCGATCAGGATACTAGAACCGAGGTC</left_flank>
        <right_flank>TAGCACACACCAGAAAGCGTCCACAAGCAAGCACTATCACTAGTCCGCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCGAAAAAAGGCCGTGAAGCCAATTCTCTTTTAACCGAATAAGTAAAGAGTCGATGAAAGTGGTGGTATTTCACCGGCGACCGAAGTCTCCCACCTATGCTACACCTCTCATGACTCTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTATTTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCAACAATTAAATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTACTCGAATTACTACGATTTAACATTCAGAGCACTGGGCAGAAATCAGTGACAGTCAGCGTCCGCAAGGACCATCTGTCACCTCTGTTTTAATTAGACAGTCGGATTCCCTGAGTCCGTACCGGTTCCAGTACGGTTGTTTAGATGAGCGATCAGGATACTAGAACCGAGGTCCTAGCACACACCAGAAAGCGTCCACAAGCAAGCACTATCACTAGTCCGCCATCAGCCCGAGAGCATCAAGCAGACAGAATAGCGCCGGACAAGCATCAACCAACTGGCCAATCGTTCCAACCACTGGAGCCAATCCTTTTCCCGAAGTTACGGATCTAGTTTGCCGACTTCCCTTACCTACATTATTCTATCGACTAGAGGCTGTTCACCTTGGAGACTTAATGCGGATATCGGTACGATTGAGTGCAAATTAATAGCCTCCCTTGGTGTTTTAAGGGCCGTTCAAAGAGCACGAGACACCACAGAAACCGCGGTGCTTTTCGGAAACAACGTCCCCATCTCTGGCTGAACCAATTCCAGGGAGTCCGTTCCTTAACTAGAGAAGAAAACTCTAGCTCGGTCTTTGAGCGACTAACCAAGTTCGAATGCGTTACCGCGCTTGTGCTCCGAAGAACACAATCTTTGCATCTCAGTTAGGGAATATTAACCCTATTCCCTTTC</canonical>
            <polymorphic>CTTCGAAAAAAGGCCGTGAAGCCAATTCTCTTTTAACCGAATAAGTAAAGAGTCGATGAAAGTGGTGGTATTTCACCGGCGACCGAAGTCTCCCACCTATGCTACACCTCTCATGACTCTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTATTTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCAACAATTAAATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTACTCGAATTACTACGATTTAACATTCAGAGCACTGGGCAGAAATCAGTGACAGTCAGCGTCCGCAAGGACCATCTGTCACCTCTGTTTTAATTAGACAGTCGGATTCCCTGAGTCCGTACCGGTTCCAGTACGGTTGTTTAGATGAGCGATCAGGATACTAGAACCGAGGTCYTAGCACACACCAGAAAGCGTCCACAAGCAAGCACTATCACTAGTCCGCCATCAGCCCGAGAGCATCAAGCAGACAGAATAGCGCCGGACAAGCATCAACCAACTGGCCAATCGTTCCAACCACTGGAGCCAATCCTTTTCCCGAAGTTACGGATCTAGTTTGCCGACTTCCCTTACCTACATTATTCTATCGACTAGAGGCTGTTCACCTTGGAGACTTAATGCGGATATCGGTACGATTGAGTGCAAATTAATAGCCTCCCTTGGTGTTTTAAGGGCCGTTCAAAGAGCACGAGACACCACAGAAACCGCGGTGCTTTTCGGAAACAACGTCCCCATCTCTGGCTGAACCAATTCCAGGGAGTCCGTTCCTTAACTAGAGAAGAAAACTCTAGCTCGGTCTTTGAGCGACTAACCAAGTTCGAATGCGTTACCGCGCTTGTGCTCCGAAGAACACAATCTTTGCATCTCAGTTAGGGAATATTAACCCTATTCCCTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>504 394 102</canonical_bands>
                <polymorphic_bands>606 394</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>394 279 225 102</canonical_bands>
                <polymorphic_bands>394 381 225</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>280 182 134 115 109 72 40 39 15 14</canonical_bands>
                <polymorphic_bands>280 182 134 115 109 72 54 39 15</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AGGWCCT</site>
                <isoschizomers>
                    <enzyme>Sse8647I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTACGATTTAACATTCAGAGCAC</pcr_primer_p1>
		<pcr_primer_p2>CGCTATTCTGTCTGCTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTACGATTTAACATTCAGAGCACTGGGCAGAAATCAGTGACAGTCAGCGTCCGCAAGGACCATCTGTCACCTCTGTTTTAATTAGACAGTCGGATTCCCTGAGTCCGTACCGGTTCCAGTACGGTTGTTTAGATGAGCGATCAGGATACTAGAACCGAGGTCCTAGCACACACCAGAAAGCGTCCACAAGCAAGCACTATCACTAGTCCGCCATCAGCCCGAGAGCATCAAGCAGACAGAATAGCG</canonical_amplicon>
		<polymorphic_amplicon>CTACGATTTAACATTCAGAGCACTGGGCAGAAATCAGTGACAGTCAGCGTCCGCAAGGACCATCTGTCACCTCTGTTTTAATTAGACAGTCGGATTCCCTGAGTCCGTACCGGTTCCAGTACGGTTGTTTAGATGAGCGATCAGGATACTAGAACCGAGGTCYTAGCACACACCAGAAAGCGTCCACAAGCAAGCACTATCACTAGTCCGCCATCAGCCCGAGAGCATCAAGCAGACAGAATAGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27889</snp_id>
        <super_contig>c003300953.Contig1</super_contig>
        <contig_pos>1604</contig_pos>
        <strand>+</strand>
        <context>CCTTGGAGAC[C/T]TAATGCGGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCCTTACCTACATTATTCTATCGACTAGAGGCTGTTCACCTTGGAGAC</left_flank>
        <right_flank>TAATGCGGATATCGGTACGATTGAGTGCAAATTAATAGCCTCCCTTGGTG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCAACAATTAAATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTACTCGAATTACTACGATTTAACATTCAGAGCACTGGGCAGAAATCAGTGACAGTCAGCGTCCGCAAGGACCATCTGTCACCTCTGTTTTAATTAGACAGTCGGATTCCCTGAGTCCGTACCGGTTCCAGTACGGTTGTTTAGATGAGCGATCAGGATACTAGAACCGAGGTCCTAGCACACACCAGAAAGCGTCCACAAGCAAGCACTATCACTAGTCCGCCATCAGCCCGAGAGCATCAAGCAGACAGAATAGCGCCGGACAAGCATCAACCAACTGGCCAATCGTTCCAACCACTGGAGCCAATCCTTTTCCCGAAGTTACGGATCTAGTTTGCCGACTTCCCTTACCTACATTATTCTATCGACTAGAGGCTGTTCACCTTGGAGACTTAATGCGGATATCGGTACGATTGAGTGCAAATTAATAGCCTCCCTTGGTGTTTTAAGGGCCGTTCAAAGAGCACGAGACACCACAGAAACCGCGGTGCTTTTCGGAAACAACGTCCCCATCTCTGGCTGAACCAATTCCAGGGAGTCCGTTCCTTAACTAGAGAAGAAAACTCTAGCTCGGTCTTTGAGCGACTAACCAAGTTCGAATGCGTTACCGCGCTTGTGCTCCGAAGAACACAATCTTTGCATCTCAGTTAGGGAATATTAACCCTATTCCCTTTCGACAAACGGGGACCAAAAGCAAGCTTTTCGCCACCGATGATACAAGGCGTTCGCCAGTACCTTAGGATCGACTGACCCACATCCAACTACTGTTCACGTGGAACCCTTCTCCACTTCAGTCTTCAAGGATCGAACTTGAATATTTGCTACTACCATTACGATCTGCACTGACGGAAGCTCCAGCCGAGCCCACGCTCATAGCCTTCAAAGCAACCGCC</canonical>
            <polymorphic>AGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCAACAATTAAATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTACTCGAATTACTACGATTTAACATTCAGAGCACTGGGCAGAAATCAGTGACAGTCAGCGTCCGCAAGGACCATCTGTCACCTCTGTTTTAATTAGACAGTCGGATTCCCTGAGTCCGTACCGGTTCCAGTACGGTTGTTTAGATGAGCGATCAGGATACTAGAACCGAGGTCCTAGCACACACCAGAAAGCGTCCACAAGCAAGCACTATCACTAGTCCGCCATCAGCCCGAGAGCATCAAGCAGACAGAATAGCGCCGGACAAGCATCAACCAACTGGCCAATCGTTCCAACCACTGGAGCCAATCCTTTTCCCGAAGTTACGGATCTAGTTTGCCGACTTCCCTTACCTACATTATTCTATCGACTAGAGGCTGTTCACCTTGGAGACYTAATGCGGATATCGGTACGATTGAGTGCAAATTAATAGCCTCCCTTGGTGTTTTAAGGGCCGTTCAAAGAGCACGAGACACCACAGAAACCGCGGTGCTTTTCGGAAACAACGTCCCCATCTCTGGCTGAACCAATTCCAGGGAGTCCGTTCCTTAACTAGAGAAGAAAACTCTAGCTCGGTCTTTGAGCGACTAACCAAGTTCGAATGCGTTACCGCGCTTGTGCTCCGAAGAACACAATCTTTGCATCTCAGTTAGGGAATATTAACCCTATTCCCTTTCGACAAACGGGGACCAAAAGCAAGCTTTTCGCCACCGATGATACAAGGCGTTCGCCAGTACCTTAGGATCGACTGACCCACATCCAACTACTGTTCACGTGGAACCCTTCTCCACTTCAGTCTTCAAGGATCGAACTTGAATATTTGCTACTACCATTACGATCTGCACTGACGGAAGCTCCAGCCGAGCCCACGCTCATAGCCTTCAAAGCAACCGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>303 235 111 101 70 57 32 25 25 21 20</canonical_bands>
                <polymorphic_bands>335 235 111 101 70 57 25 25 21 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGAAGTTACGGATCTAGTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTCTCTAGTTAAGGAACGGACT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CCGAAGTTACGGATCTAGTTTGCCGACTTCCCTTACCTACATTATTCTATCGACTAGAGGCTGTTCACCTTGGAGACTTAATGCGGATATCGGTACGATTGAGTGCAAATTAATAGCCTCCCTTGGTGTTTTAAGGGCCGTTCAAAGAGCACGAGACACCACAGAAACCGCGGTGCTTTTCGGAAACAACGTCCCCATCTCTGGCTGAACCAATTCCAGGGAGTCCGTTCCTTAACTAGAGAAG</canonical_amplicon>
		<polymorphic_amplicon>CCGAAGTTACGGATCTAGTTTGCCGACTTCCCTTACCTACATTATTCTATCGACTAGAGGCTGTTCACCTTGGAGACYTAATGCGGATATCGGTACGATTGAGTGCAAATTAATAGCCTCCCTTGGTGTTTTAAGGGCCGTTCAAAGAGCACGAGACACCACAGAAACCGCGGTGCTTTTCGGAAACAACGTCCCCATCTCTGGCTGAACCAATTCCAGGGAGTCCGTTCCTTAACTAGAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27893</snp_id>
        <super_contig>c003301131.Contig1</super_contig>
        <contig_pos>7346</contig_pos>
        <strand>+</strand>
        <context>TAAGGCCAGA[A/G]TACAGAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAACGAGCTGAGAAATAGGTCCGAAAAATCTTGGATTTTTAAGGCCAGA</left_flank>
        <right_flank>TACAGAAAAAATTTTAATTCTTTCAAATATGATTTTTCCGACAAAATCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCGTCGTGGATTGCGGTGACGTGGCAATTTTGATTATTTTATGATGAAGATGATGTTGGTGGTTAATAGTGTTACAGGTCTCCTCTCCCTTGTTCGATGACGCCGCGCAACTGCAAAAAATTTGAAATTTGCGGGGTGGTGTCAATGGAGCGCGCTTGCAGAGAGCAATCGAAAAGTGAAGAAAAATTCTTGAGGCTTGGCGGGAACTTGAAAACAATTCCAGAAGCGACTTTTCGAATTTTCAGAATTTCACTTATTTTTCTACACACTTTAAAATTAAAGATATCCCGGAAGAAGCAAAGTACACTCAAAAAAATAGAAAAAAAAGAAGAAACATGAGAAAATAGATAGGAAGGAAATAGAGAACGACCAATAAAACAGAAACTAATAAAATCCAGCTGATCTCTTTTTTTGTTGTTTTTGACTTGTTCAATGTGTTCCAATGACGCAAACGAGCTGAGAAATAGGTCCGAAAAATCTTGGATTTTTAAGGCCAGAATACAGAAAAAATTTTAATTCTTTCAAATATGATTTTTCCGACAAAATCCAGAAAATCCAAAAAATTTTTTTTTTGAAAACTTTCGGATTTTTTCGATTTTCAAAATATGCTCTAGAACCCCTAGAATTGTTTTTGTAGTCTGAAGTTCATCCATTCGGGCTCTGTCGCGTTTCAGAACCCGGCGTTTCGGAACTACGACGTTTTAGAACCCGACGTTTCAGAACCCGATGTTTAAAAAAAATTGAACTTTTCAAAACGGTGTCTGAAAGTACCAGCGACTTTGAGTCTCATTTTTGCGTACTTCTAGACATCGTTTTTGAAAATTTCAATTTTTTTTTCGATTTTTTGAGATTCCGAGTGTGAACGTATCACTATTTGGAGTACGGTAGATGAGAACGAATAAAAAAGCAGAAAAGCACGAAATTGAAATGAGAAATGTTCATTTGGTGTGCAAGAACCACTATGCAGAAATGCAGAAAAGTTCCGAATCGTTGTGGTTC</canonical>
            <polymorphic>GTCGTCGTGGATTGCGGTGACGTGGCAATTTTGATTATTTTATGATGAAGATGATGTTGGTGGTTAATAGTGTTACAGGTCTCCTCTCCCTTGTTCGATGACGCCGCGCAACTGCAAAAAATTTGAAATTTGCGGGGTGGTGTCAATGGAGCGCGCTTGCAGAGAGCAATCGAAAAGTGAAGAAAAATTCTTGAGGCTTGGCGGGAACTTGAAAACAATTCCAGAAGCGACTTTTCGAATTTTCAGAATTTCACTTATTTTTCTACACACTTTAAAATTAAAGATATCCCGGAAGAAGCAAAGTACACTCAAAAAAATAGAAAAAAAAGAAGAAACATGAGAAAATAGATAGGAAGGAAATAGAGAACGACCAATAAAACAGAAACTAATAAAATCCAGCTGATCTCTTTTTTTGTTGTTTTTGACTTGTTCAATGTGTTCCAATGACGCAAACGAGCTGAGAAATAGGTCCGAAAAATCTTGGATTTTTAAGGCCAGARTACAGAAAAAATTTTAATTCTTTCAAATATGATTTTTCCGACAAAATCCAGAAAATCCAAAAAATTTTTTTTTTGAAAACTTTCGGATTTTTTCGATTTTCAAAATATGCTCTAGAACCCCTAGAATTGTTTTTGTAGTCTGAAGTTCATCCATTCGGGCTCTGTCGCGTTTCAGAACCCGGCGTTTCGGAACTACGACGTTTTAGAACCCGACGTTTCAGAACCCGATGTTTAAAAAAAATTGAACTTTTCAAAACGGTGTCTGAAAGTACCAGCGACTTTGAGTCTCATTTTTGCGTACTTCTAGACATCGTTTTTGAAAATTTCAATTTTTTTTTCGATTTTTTGAGATTCCGAGTGTGAACGTATCACTATTTGGAGTACGGTAGATGAGAACGAATAAAAAAGCAGAAAAGCACGAAATTGAAATGAGAAATGTTCATTTGGTGTGCAAGAACCACTATGCAGAAATGCAGAAAAGTTCCGAATCGTTGTGGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTTGTTTTTGACTTGTTC</pcr_primer_p1>
		<pcr_primer_p2>AATGGATGAACTTCAGACTACAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTTGTTTTTGACTTGTTCAATGTGTTCCAATGACGCAAACGAGCTGAGAAATAGGTCCGAAAAATCTTGGATTTTTAAGGCCAGAATACAGAAAAAATTTTAATTCTTTCAAATATGATTTTTCCGACAAAATCCAGAAAATCCAAAAAATTTTTTTTTTGAAAACTTTCGGATTTTTTCGATTTTCAAAATATGCTCTAGAACCCCTAGAATTGTTTTTGTAGTCTGAAGTTCATCCATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTTGTTTTTGACTTGTTCAATGTGTTCCAATGACGCAAACGAGCTGAGAAATAGGTCCGAAAAATCTTGGATTTTTAAGGCCAGARTACAGAAAAAATTTTAATTCTTTCAAATATGATTTTTCCGACAAAATCCAGAAAATCCAAAAAATTTTTTTTTTGAAAACTTTCGGATTTTTTCGATTTTCAAAATATGCTCTAGAACCCCTAGAATTGTTTTTGTAGTCTGAAGTTCATCCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27894</snp_id>
        <super_contig>c003301131.Contig1</super_contig>
        <contig_pos>7360</contig_pos>
        <strand>+</strand>
        <context>AGAAAAAATT[A/T]TAATTCTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATAGGTCCGAAAAATCTTGGATTTTTAAGGCCAGAATACAGAAAAAATT</left_flank>
        <right_flank>TAATTCTTTCAAATATGATTTTTCCGACAAAATCCAGAAAATCCAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGTGACGTGGCAATTTTGATTATTTTATGATGAAGATGATGTTGGTGGTTAATAGTGTTACAGGTCTCCTCTCCCTTGTTCGATGACGCCGCGCAACTGCAAAAAATTTGAAATTTGCGGGGTGGTGTCAATGGAGCGCGCTTGCAGAGAGCAATCGAAAAGTGAAGAAAAATTCTTGAGGCTTGGCGGGAACTTGAAAACAATTCCAGAAGCGACTTTTCGAATTTTCAGAATTTCACTTATTTTTCTACACACTTTAAAATTAAAGATATCCCGGAAGAAGCAAAGTACACTCAAAAAAATAGAAAAAAAAGAAGAAACATGAGAAAATAGATAGGAAGGAAATAGAGAACGACCAATAAAACAGAAACTAATAAAATCCAGCTGATCTCTTTTTTTGTTGTTTTTGACTTGTTCAATGTGTTCCAATGACGCAAACGAGCTGAGAAATAGGTCCGAAAAATCTTGGATTTTTAAGGCCAGAATACAGAAAAAATTTTAATTCTTTCAAATATGATTTTTCCGACAAAATCCAGAAAATCCAAAAAATTTTTTTTTTGAAAACTTTCGGATTTTTTCGATTTTCAAAATATGCTCTAGAACCCCTAGAATTGTTTTTGTAGTCTGAAGTTCATCCATTCGGGCTCTGTCGCGTTTCAGAACCCGGCGTTTCGGAACTACGACGTTTTAGAACCCGACGTTTCAGAACCCGATGTTTAAAAAAAATTGAACTTTTCAAAACGGTGTCTGAAAGTACCAGCGACTTTGAGTCTCATTTTTGCGTACTTCTAGACATCGTTTTTGAAAATTTCAATTTTTTTTTCGATTTTTTGAGATTCCGAGTGTGAACGTATCACTATTTGGAGTACGGTAGATGAGAACGAATAAAAAAGCAGAAAAGCACGAAATTGAAATGAGAAATGTTCATTTGGTGTGCAAGAACCACTATGCAGAAATGCAGAAAAGTTCCGAATCGTTGTGGTTCCGAAACGTCTGGTT</canonical>
            <polymorphic>CGGTGACGTGGCAATTTTGATTATTTTATGATGAAGATGATGTTGGTGGTTAATAGTGTTACAGGTCTCCTCTCCCTTGTTCGATGACGCCGCGCAACTGCAAAAAATTTGAAATTTGCGGGGTGGTGTCAATGGAGCGCGCTTGCAGAGAGCAATCGAAAAGTGAAGAAAAATTCTTGAGGCTTGGCGGGAACTTGAAAACAATTCCAGAAGCGACTTTTCGAATTTTCAGAATTTCACTTATTTTTCTACACACTTTAAAATTAAAGATATCCCGGAAGAAGCAAAGTACACTCAAAAAAATAGAAAAAAAAGAAGAAACATGAGAAAATAGATAGGAAGGAAATAGAGAACGACCAATAAAACAGAAACTAATAAAATCCAGCTGATCTCTTTTTTTGTTGTTTTTGACTTGTTCAATGTGTTCCAATGACGCAAACGAGCTGAGAAATAGGTCCGAAAAATCTTGGATTTTTAAGGCCAGAATACAGAAAAAATTWTAATTCTTTCAAATATGATTTTTCCGACAAAATCCAGAAAATCCAAAAAATTTTTTTTTTGAAAACTTTCGGATTTTTTCGATTTTCAAAATATGCTCTAGAACCCCTAGAATTGTTTTTGTAGTCTGAAGTTCATCCATTCGGGCTCTGTCGCGTTTCAGAACCCGGCGTTTCGGAACTACGACGTTTTAGAACCCGACGTTTCAGAACCCGATGTTTAAAAAAAATTGAACTTTTCAAAACGGTGTCTGAAAGTACCAGCGACTTTGAGTCTCATTTTTGCGTACTTCTAGACATCGTTTTTGAAAATTTCAATTTTTTTTTCGATTTTTTGAGATTCCGAGTGTGAACGTATCACTATTTGGAGTACGGTAGATGAGAACGAATAAAAAAGCAGAAAAGCACGAAATTGAAATGAGAAATGTTCATTTGGTGTGCAAGAACCACTATGCAGAAATGCAGAAAAGTTCCGAATCGTTGTGGTTCCGAAACGTCTGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>263 259 193 105 59 53 52 9 7</canonical_bands>
                <polymorphic_bands>316 259 193 105 59 52 9 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>282 218 211 208 50 25 6</canonical_bands>
                <polymorphic_bands>282 243 211 208 50 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTTGTTTTTGACTTGTTC</pcr_primer_p1>
		<pcr_primer_p2>AATGGATGAACTTCAGACTACAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTTGTTTTTGACTTGTTCAATGTGTTCCAATGACGCAAACGAGCTGAGAAATAGGTCCGAAAAATCTTGGATTTTTAAGGCCAGAATACAGAAAAAATTTTAATTCTTTCAAATATGATTTTTCCGACAAAATCCAGAAAATCCAAAAAATTTTTTTTTTGAAAACTTTCGGATTTTTTCGATTTTCAAAATATGCTCTAGAACCCCTAGAATTGTTTTTGTAGTCTGAAGTTCATCCATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTTGTTTTTGACTTGTTCAATGTGTTCCAATGACGCAAACGAGCTGAGAAATAGGTCCGAAAAATCTTGGATTTTTAAGGCCAGAATACAGAAAAAATTWTAATTCTTTCAAATATGATTTTTCCGACAAAATCCAGAAAATCCAAAAAATTTTTTTTTTGAAAACTTTCGGATTTTTTCGATTTTCAAAATATGCTCTAGAACCCCTAGAATTGTTTTTGTAGTCTGAAGTTCATCCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27895</snp_id>
        <super_contig>c003301131.Contig1</super_contig>
        <contig_pos>16566</contig_pos>
        <strand></strand>
        <context>TCAGGCATTG[C/A]TGAGAAAAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AGACTTGGTTTCAGCCTTGTTATCACTTTGCTCAGCCTCTTCAGGCATTG</left_flank>
        <right_flank>TGAGAAAAGTAGGATGTTGAGACTTCAGGTAGATCGAAAATTGAGTCCAG</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATCCGGTAGTAGATCAACTAATCGAATCGCTTCGGCAGGTGTGTCTGAAGCGACCAGCGCTCTTTGGTATAGATTTGGCAGGATTAAAGGGACAGGCAGCTGACGGAGCCACAGTTTCAAAAGACACGCTGGCACATTGGCATCGTGCATTTTAGGCGCTAGCCATCCGTCGAGTTGCCCACGGGCGGTTGCTAGTTGTTCTGGGTCACCGGCAACTCTGGAACGATTATTTGAAAATTAACTTTTTTCTGAAATTTTAAAACTTACCGAAATATTCCTTCTGTCCTCCTTCCTCCAGACTGATACAACAATTCAATGAGAGTTGTCAGCAGCCAAGGAAGCTTCAATTCTGGAAACTTCTCCGATTGCATCTGCATCAATTCCTCTAATGAAGCAGAGAACAAGGGTGGTCGGAAAATGTGAATTTTGGTTTCTTGAATACTCTGAAGACTTGGTTTCAGCCTTGTTATCACTTTGCTCAGCCTCTTCAGGCATTGCTGAGAAAAGTAGGATGTTGAGACTTCAGGTAGATCGAAAATTGAGTCCAGATGCTTGTTGAGAAAGTCGTTTAACTTTTCACTAATCGCTTCGGTGGGAAATATAAAAGCAAGAACGATGGTGAGTAGCTCCCAACCTCTTCTCAAACTGTCTGGCTTCTCATTATCCGATAATTGTTGCATAAGAAGTGCAATCGCTTCATCTCCAATTTCTGGTTTCTTGGATGCCAGTTCACAGAAAGACAATGCCACTTGCTCTGGACTAGTCTTACTTTTCCGATCTCCCATATATGATTGAATTAATTTAAAAAGTGCTGCAGTCTCTTTCCTCAGCTGCTTATTCTCCGGTTGTGTCAACGACACCTTCGGTGCATCTTTCGACCAGCCATTCTTATTTTTACTCTTTGTAGAGGTGACAGATGAGAATAGCGATTTTCTTGTGCTCCCTGTTCCCCCTCCAACTGCATTCGGTGGTGACGCCGATCGAGAGGAGCGTGGAGG</canonical>
            <polymorphic>ATATCCGGTAGTAGATCAACTAATCGAATCGCTTCGGCAGGTGTGTCTGAAGCGACCAGCGCTCTTTGGTATAGATTTGGCAGGATTAAAGGGACAGGCAGCTGACGGAGCCACAGTTTCAAAAGACACGCTGGCACATTGGCATCGTGCATTTTAGGCGCTAGCCATCCGTCGAGTTGCCCACGGGCGGTTGCTAGTTGTTCTGGGTCACCGGCAACTCTGGAACGATTATTTGAAAATTAACTTTTTTCTGAAATTTTAAAACTTACCGAAATATTCCTTCTGTCCTCCTTCCTCCAGACTGATACAACAATTCAATGAGAGTTGTCAGCAGCCAAGGAAGCTTCAATTCTGGAAACTTCTCCGATTGCATCTGCATCAATTCCTCTAATGAAGCAGAGAACAAGGGTGGTCGGAAAATGTGAATTTTGGTTTCTTGAATACTCTGAAGACTTGGTTTCAGCCTTGTTATCACTTTGCTCAGCCTCTTCAGGCATTGMTGAGAAAAGTAGGATGTTGAGACTTCAGGTAGATCGAAAATTGAGTCCAGATGCTTGTTGAGAAAGTCGTTTAACTTTTCACTAATCGCTTCGGTGGGAAATATAAAAGCAAGAACGATGGTGAGTAGCTCCCAACCTCTTCTCAAACTGTCTGGCTTCTCATTATCCGATAATTGTTGCATAAGAAGTGCAATCGCTTCATCTCCAATTTCTGGTTTCTTGGATGCCAGTTCACAGAAAGACAATGCCACTTGCTCTGGACTAGTCTTACTTTTCCGATCTCCCATATATGATTGAATTAATTTAAAAAGTGCTGCAGTCTCTTTCCTCAGCTGCTTATTCTCCGGTTGTGTCAACGACACCTTCGGTGCATCTTTCGACCAGCCATTCTTATTTTTACTCTTTGTAGAGGTGACAGATGAGAATAGCGATTTTCTTGTGCTCCCTGTTCCCCCTCCAACTGCATTCGGTGGTGACGCCGATCGAGAGGAGCGTGGAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>480 328 172 20</canonical_bands>
                <polymorphic_bands>480 348 172</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATCTGCATCAATTCCTCTAAT</pcr_primer_p1>
		<pcr_primer_p2>CATCGTTCTTGCTTTTATATTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATCTGCATCAATTCCTCTAATGAAGCAGAGAACAAGGGTGGTCGGAAAATGTGAATTTTGGTTTCTTGAATACTCTGAAGACTTGGTTTCAGCCTTGTTATCACTTTGCTCAGCCTCTTCAGGCATTGCTGAGAAAAGTAGGATGTTGAGACTTCAGGTAGATCGAAAATTGAGTCCAGATGCTTGTTGAGAAAGTCGTTTAACTTTTCACTAATCGCTTCGGTGGGAAATATAAAAGCAAGAACGATG</canonical_amplicon>
		<polymorphic_amplicon>CATCTGCATCAATTCCTCTAATGAAGCAGAGAACAAGGGTGGTCGGAAAATGTGAATTTTGGTTTCTTGAATACTCTGAAGACTTGGTTTCAGCCTTGTTATCACTTTGCTCAGCCTCTTCAGGCATTGMTGAGAAAAGTAGGATGTTGAGACTTCAGGTAGATCGAAAATTGAGTCCAGATGCTTGTTGAGAAAGTCGTTTAACTTTTCACTAATCGCTTCGGTGGGAAATATAAAAGCAAGAACGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27896</snp_id>
        <super_contig>c003301131.Contig1</super_contig>
        <contig_pos>16778</contig_pos>
        <strand>+</strand>
        <context>TCTCCAATTT[A/C]TGGTTTCTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTATCCGATAATTGTTGCATAAGAAGTGCAATCGCTTCATCTCCAATTT</left_flank>
        <right_flank>TGGTTTCTTGGATGCCAGTTCACAGAAAGACAATGCCACTTGCTCTGGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCAACTCTGGAACGATTATTTGAAAATTAACTTTTTTCTGAAATTTTAAAACTTACCGAAATATTCCTTCTGTCCTCCTTCCTCCAGACTGATACAACAATTCAATGAGAGTTGTCAGCAGCCAAGGAAGCTTCAATTCTGGAAACTTCTCCGATTGCATCTGCATCAATTCCTCTAATGAAGCAGAGAACAAGGGTGGTCGGAAAATGTGAATTTTGGTTTCTTGAATACTCTGAAGACTTGGTTTCAGCCTTGTTATCACTTTGCTCAGCCTCTTCAGGCATTGCTGAGAAAAGTAGGATGTTGAGACTTCAGGTAGATCGAAAATTGAGTCCAGATGCTTGTTGAGAAAGTCGTTTAACTTTTCACTAATCGCTTCGGTGGGAAATATAAAAGCAAGAACGATGGTGAGTAGCTCCCAACCTCTTCTCAAACTGTCTGGCTTCTCATTATCCGATAATTGTTGCATAAGAAGTGCAATCGCTTCATCTCCAATTTCTGGTTTCTTGGATGCCAGTTCACAGAAAGACAATGCCACTTGCTCTGGACTAGTCTTACTTTTCCGATCTCCCATATATGATTGAATTAATTTAAAAAGTGCTGCAGTCTCTTTCCTCAGCTGCTTATTCTCCGGTTGTGTCAACGACACCTTCGGTGCATCTTTCGACCAGCCATTCTTATTTTTACTCTTTGTAGAGGTGACAGATGAGAATAGCGATTTTCTTGTGCTCCCTGTTCCCCCTCCAACTGCATTCGGTGGTGACGCCGATCGAGAGGAGCGTGGAGGAATGGAATCGGAAGATGGTGCATGAGATAAGGTTGAAGATGCACTTGCTGCAGTTGGGAACGCACCATATGGTGGGCCGTTGCGAGAGGAGGAGGATGGAGGATTTGGGCCAACACCACCGTAGTCGCTGTTTGCGGCCGCCCGTTCGCTTAGCTCCTCGTCTAGTGACATCCACTGCAAAAATGAATTATGAGGATGGGGAATGGCAATAT</canonical>
            <polymorphic>GGCAACTCTGGAACGATTATTTGAAAATTAACTTTTTTCTGAAATTTTAAAACTTACCGAAATATTCCTTCTGTCCTCCTTCCTCCAGACTGATACAACAATTCAATGAGAGTTGTCAGCAGCCAAGGAAGCTTCAATTCTGGAAACTTCTCCGATTGCATCTGCATCAATTCCTCTAATGAAGCAGAGAACAAGGGTGGTCGGAAAATGTGAATTTTGGTTTCTTGAATACTCTGAAGACTTGGTTTCAGCCTTGTTATCACTTTGCTCAGCCTCTTCAGGCATTGCTGAGAAAAGTAGGATGTTGAGACTTCAGGTAGATCGAAAATTGAGTCCAGATGCTTGTTGAGAAAGTCGTTTAACTTTTCACTAATCGCTTCGGTGGGAAATATAAAAGCAAGAACGATGGTGAGTAGCTCCCAACCTCTTCTCAAACTGTCTGGCTTCTCATTATCCGATAATTGTTGCATAAGAAGTGCAATCGCTTCATCTCCAATTTMTGGTTTCTTGGATGCCAGTTCACAGAAAGACAATGCCACTTGCTCTGGACTAGTCTTACTTTTCCGATCTCCCATATATGATTGAATTAATTTAAAAAGTGCTGCAGTCTCTTTCCTCAGCTGCTTATTCTCCGGTTGTGTCAACGACACCTTCGGTGCATCTTTCGACCAGCCATTCTTATTTTTACTCTTTGTAGAGGTGACAGATGAGAATAGCGATTTTCTTGTGCTCCCTGTTCCCCCTCCAACTGCATTCGGTGGTGACGCCGATCGAGAGGAGCGTGGAGGAATGGAATCGGAAGATGGTGCATGAGATAAGGTTGAAGATGCACTTGCTGCAGTTGGGAACGCACCATATGGTGGGCCGTTGCGAGAGGAGGAGGATGGAGGATTTGGGCCAACACCACCGTAGTCGCTGTTTGCGGCCGCCCGTTCGCTTAGCTCCTCGTCTAGTGACATCCACTGCAAAAATGAATTATGAGGATGGGGAATGGCAATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTCAGGTAGATCGAAAATTG</pcr_primer_p1>
		<pcr_primer_p2>GTAAGACTAGTCCAGAGCAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTCAGGTAGATCGAAAATTGAGTCCAGATGCTTGTTGAGAAAGTCGTTTAACTTTTCACTAATCGCTTCGGTGGGAAATATAAAAGCAAGAACGATGGTGAGTAGCTCCCAACCTCTTCTCAAACTGTCTGGCTTCTCATTATCCGATAATTGTTGCATAAGAAGTGCAATCGCTTCATCTCCAATTTCTGGTTTCTTGGATGCCAGTTCACAGAAAGACAATGCCACTTGCTCTGGACTAGTCTTAC</canonical_amplicon>
		<polymorphic_amplicon>ACTTCAGGTAGATCGAAAATTGAGTCCAGATGCTTGTTGAGAAAGTCGTTTAACTTTTCACTAATCGCTTCGGTGGGAAATATAAAAGCAAGAACGATGGTGAGTAGCTCCCAACCTCTTCTCAAACTGTCTGGCTTCTCATTATCCGATAATTGTTGCATAAGAAGTGCAATCGCTTCATCTCCAATTTMTGGTTTCTTGGATGCCAGTTCACAGAAAGACAATGCCACTTGCTCTGGACTAGTCTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27897</snp_id>
        <super_contig>c003301131.Contig1</super_contig>
        <contig_pos>19083</contig_pos>
        <strand>+</strand>
        <context>CAGGATAGTG[C/T]CCATCGACTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGCCAAAAAACCAATTTCAAAAGTAGGGTTCTCCTAGATCAGGATAGTG</left_flank>
        <right_flank>CCATCGACTTTTTTTTGGAATATTTTCGAACTAATTTTCAGGTTTTTTTT</right_flank>
        <qual_score>148</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGATTTTTTTCATTCAAAGTTGGTCCAGAACTTTTTTTCTAGTGTACTGAAATTCATGGAACATGGACCAATAAATCAGAAATTTGGTATAGAAATTGAAAAAGTAAATGTCCAAAAAAGAAGATAAAACTAGACATGGTGCATCGATTCAAAATGTTCTCCTCGCTATAGTTTCTTTTAGCATCAATATTTTCGGACAAACTAAAGTAGATATGATAAAACTCGACGAGTACTACAAAATGGTACTATCTAGAAAACTGTAATTTGTCTTTGAACAAAGTTACAAGTCAAAACCGTCTGAGCTACGCGGTCACATCTTTATGGCTTTTTAACTTTGTTCGTAGAAAATATACAGTTTTCCAAATAGTACATGTTTGTAGTTCTTGAGTTCTTTTATCATATCTGATTTAGTTGGCTCAAAAATATTGATTCTGAAAGAAGCTATGGGGGCCAAAAAACCAATTTCAAAAGTAGGGTTCTCCTAGATCAGGATAGTGTCCATCGACTTTTTTTTGGAATATTTTCGAACTAATTTTCAGGTTTTTTTTTTAGTTGATCAAAATGTATGAAACATGGACCAATCAACCAGAAATTTGATTTAGAATTCGGAATATCCAAAAAAAAGTTCCAAAATGATGGAACAAGAATCGGTGCATCAGCCCAAAATCCTCTGCTGGGTCCGGATAAGGTTCATCAACTTATTTTAGAATATTTTCAAAAACAATTTTTTGGGCTCGGAAAAAAAACTCACACATTAGCACCCTCCGGGGGCTCCCATGCACACTGTCCAGTCACCAAATTCGCATACATCGTCTGCCTGGACTGTGGTTCCACAATCTCAACCCACTCCACGTTGGCGGCTCGACTATTCGTCGATCCATTCTCATAGAATTCCGCATTATTAGATGCAACCGAGACAGGACGGGGTGGATGATGATGTCGTGGTGATGTCAAGTCGTCCCCATCTTTTATGCTCATTTTATGGCATTGGTGGGGGA</canonical>
            <polymorphic>TCGGATTTTTTTCATTCAAAGTTGGTCCAGAACTTTTTTTCTAGTGTACTGAAATTCATGGAACATGGACCAATAAATCAGAAATTTGGTATAGAAATTGAAAAAGTAAATGTCCAAAAAAGAAGATAAAACTAGACATGGTGCATCGATTCAAAATGTTCTCCTCGCTATAGTTTCTTTTAGCATCAATATTTTCGGACAAACTAAAGTAGATATGATAAAACTCGACGAGTACTACAAAATGGTACTATCTAGAAAACTGTAATTTGTCTTTGAACAAAGTTACAAGTCAAAACCGTCTGAGCTACGCGGTCACATCTTTATGGCTTTTTAACTTTGTTCGTAGAAAATATACAGTTTTCCAAATAGTACATGTTTGTAGTTCTTGAGTTCTTTTATCATATCTGATTTAGTTGGCTCAAAAATATTGATTCTGAAAGAAGCTATGGGGGCCAAAAAACCAATTTCAAAAGTAGGGTTCTCCTAGATCAGGATAGTGYCCATCGACTTTTTTTTGGAATATTTTCGAACTAATTTTCAGGTTTTTTTTTTAGTTGATCAAAATGTATGAAACATGGACCAATCAACCAGAAATTTGATTTAGAATTCGGAATATCCAAAAAAAAGTTCCAAAATGATGGAACAAGAATCGGTGCATCAGCCCAAAATCCTCTGCTGGGTCCGGATAAGGTTCATCAACTTATTTTAGAATATTTTCAAAAACAATTTTTTGGGCTCGGAAAAAAAACTCACACATTAGCACCCTCCGGGGGCTCCCATGCACACTGTCCAGTCACCAAATTCGCATACATCGTCTGCCTGGACTGTGGTTCCACAATCTCAACCCACTCCACGTTGGCGGCTCGACTATTCGTCGATCCATTCTCATAGAATTCCGCATTATTAGATGCAACCGAGACAGGACGGGGTGGATGATGATGTCGTGGTGATGTCAAGTCGTCCCCATCTTTTATGCTCATTTTATGGCATTGGTGGGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGATTCAAAATGTTCTCCT</pcr_primer_p1>
		<pcr_primer_p2>TGGTCCATGTTTCATACATTT</pcr_primer_p2>
		<pcr_amplicon_size>438</pcr_amplicon_size>
		<canonical_amplicon>ATCGATTCAAAATGTTCTCCTCGCTATAGTTTCTTTTAGCATCAATATTTTCGGACAAACTAAAGTAGATATGATAAAACTCGACGAGTACTACAAAATGGTACTATCTAGAAAACTGTAATTTGTCTTTGAACAAAGTTACAAGTCAAAACCGTCTGAGCTACGCGGTCACATCTTTATGGCTTTTTAACTTTGTTCGTAGAAAATATACAGTTTTCCAAATAGTACATGTTTGTAGTTCTTGAGTTCTTTTATCATATCTGATTTAGTTGGCTCAAAAATATTGATTCTGAAAGAAGCTATGGGGGCCAAAAAACCAATTTCAAAAGTAGGGTTCTCCTAGATCAGGATAGTGTCCATCGACTTTTTTTTGGAATATTTTCGAACTAATTTTCAGGTTTTTTTTTTAGTTGATCAAAATGTATGAAACATGGACCA</canonical_amplicon>
		<polymorphic_amplicon>ATCGATTCAAAATGTTCTCCTCGCTATAGTTTCTTTTAGCATCAATATTTTCGGACAAACTAAAGTAGATATGATAAAACTCGACGAGTACTACAAAATGGTACTATCTAGAAAACTGTAATTTGTCTTTGAACAAAGTTACAAGTCAAAACCGTCTGAGCTACGCGGTCACATCTTTATGGCTTTTTAACTTTGTTCGTAGAAAATATACAGTTTTCCAAATAGTACATGTTTGTAGTTCTTGAGTTCTTTTATCATATCTGATTTAGTTGGCTCAAAAATATTGATTCTGAAAGAAGCTATGGGGGCCAAAAAACCAATTTCAAAAGTAGGGTTCTCCTAGATCAGGATAGTGYCCATCGACTTTTTTTTGGAATATTTTCGAACTAATTTTCAGGTTTTTTTTTTAGTTGATCAAAATGTATGAAACATGGACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27898</snp_id>
        <super_contig>c003301131.Contig1</super_contig>
        <contig_pos>37694</contig_pos>
        <strand>+</strand>
        <context>AATTATTATT[C/T]GTCATAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTTTGTTCGTTCTTTTTTTGTAGATTTTTAGATTTGAAAATTATTATT</left_flank>
        <right_flank>GTCATAAAAAATTTAAAGGAACATACGATATATTCCGATACTTATTTTGA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAGAAGGCTGGCGGCCGGGTGCGAACCGCGTATTACGATGTGGAGAGTCTTGAAGCGGCGGTGAATCCGAAGGCGTGGTTTGAAAAAGGACGCGTGGTTCCGAGAAGGAAGACGCCGCCAGCTAGTCTTATCGAATATTATATGGACGCGAAGAATCGTGGATATTTGTGTGAGGAGACGGAAATTGAGAAGGAACGTCAATTGAGTGCTGATGTTAGAGGATACGAGCTGACGGAGACGCTGAAAATCACTTCTGCATTGAAATCGATCGATCAAGTGTTCCACGGAATTCCATCTGGATGCGTCGTTTCATTGGCTGATCGGAAAGTGTTCGCACCGAAAAATGAAGTACATCGCGAGTATTACAGTAGCCAACGATCTGATAAATTGTATTCTTAAGCTCTTCTTTTAGAATTCGTAATAGCTTTTGTTTCGTTTCTGATTGTTGATTTTGTTCGTTCTTTTTTTGTAGATTTTTAGATTTGAAAATTATTATTCGTCATAAAAAATTTAAAGGAACATACGATATATTCCGATACTTATTTTGATCTGAATCTTTTGATTTTTCTCAGATTGCGATAATCGAGAAATTTCGAATTTCTTCCCTTCTGGGAATTCCGTTCACCTCCACATCAGATGGCGTGCGTTTGAAACATGCATCCGAAAACTACAGTAATCTTCATTTCATCAATTTTGAAAGTTTTAATTGAAAGCTACAGTAATCCTCGTTTTTCTCAATGTTAAAAATTACAGTAATTCTCATTGTTTTCAATTTTGAACTTTTTATTCGACAACTACAGTAATCCTCATTTTTCTTGAAAAATGAATCCAAAACTACAGTAATCATTTTTTCAATATTGAAAAATGAATCTGAAAACTACAGTAATCCACTTTCTTCAACTTTGAAAAATGAACAGAAAAAACTACAGTAATTTTTTTTTTCAATTTTAGGGATGAATTCAGACACTTTTCTGGAACTTAATCTAGTCGTAAACATT</canonical>
            <polymorphic>TTGAGAAGGCTGGCGGCCGGGTGCGAACCGCGTATTACGATGTGGAGAGTCTTGAAGCGGCGGTGAATCCGAAGGCGTGGTTTGAAAAAGGACGCGTGGTTCCGAGAAGGAAGACGCCGCCAGCTAGTCTTATCGAATATTATATGGACGCGAAGAATCGTGGATATTTGTGTGAGGAGACGGAAATTGAGAAGGAACGTCAATTGAGTGCTGATGTTAGAGGATACGAGCTGACGGAGACGCTGAAAATCACTTCTGCATTGAAATCGATCGATCAAGTGTTCCACGGAATTCCATCTGGATGCGTCGTTTCATTGGCTGATCGGAAAGTGTTCGCACCGAAAAATGAAGTACATCGCGAGTATTACAGTAGCCAACGATCTGATAAATTGTATTCTTAAGCTCTTCTTTTAGAATTCGTAATAGCTTTTGTTTCGTTTCTGATTGTTGATTTTGTTCGTTCTTTTTTTGTAGATTTTTAGATTTGAAAATTATTATTYGTCATAAAAAATTTAAAGGAACATACGATATATTCCGATACTTATTTTGATCTGAATCTTTTGATTTTTCTCAGATTGCGATAATCGAGAAATTTCGAATTTCTTCCCTTCTGGGAATTCCGTTCACCTCCACATCAGATGGCGTGCGTTTGAAACATGCATCCGAAAACTACAGTAATCTTCATTTCATCAATTTTGAAAGTTTTAATTGAAAGCTACAGTAATCCTCGTTTTTCTCAATGTTAAAAATTACAGTAATTCTCATTGTTTTCAATTTTGAACTTTTTATTCGACAACTACAGTAATCCTCATTTTTCTTGAAAAATGAATCCAAAACTACAGTAATCATTTTTTCAATATTGAAAAATGAATCTGAAAACTACAGTAATCCACTTTCTTCAACTTTGAAAAATGAACAGAAAAAACTACAGTAATTTTTTTTTTCAATTTTAGGGATGAATTCAGACACTTTTCTGGAACTTAATCTAGTCGTAAACATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTATTCTTAAGCTCTTCTTTTAGA</pcr_primer_p1>
		<pcr_primer_p2>CATCTGATGTGGAGGTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTGTATTCTTAAGCTCTTCTTTTAGAATTCGTAATAGCTTTTGTTTCGTTTCTGATTGTTGATTTTGTTCGTTCTTTTTTTGTAGATTTTTAGATTTGAAAATTATTATTCGTCATAAAAAATTTAAAGGAACATACGATATATTCCGATACTTATTTTGATCTGAATCTTTTGATTTTTCTCAGATTGCGATAATCGAGAAATTTCGAATTTCTTCCCTTCTGGGAATTCCGTTCACCTCCACATCAGATG</canonical_amplicon>
		<polymorphic_amplicon>TTGTATTCTTAAGCTCTTCTTTTAGAATTCGTAATAGCTTTTGTTTCGTTTCTGATTGTTGATTTTGTTCGTTCTTTTTTTGTAGATTTTTAGATTTGAAAATTATTATTYGTCATAAAAAATTTAAAGGAACATACGATATATTCCGATACTTATTTTGATCTGAATCTTTTGATTTTTCTCAGATTGCGATAATCGAGAAATTTCGAATTTCTTCCCTTCTGGGAATTCCGTTCACCTCCACATCAGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27899</snp_id>
        <super_contig>c003301131.Contig1</super_contig>
        <contig_pos>37754</contig_pos>
        <strand>+</strand>
        <context>ATCTGAATCT[A/T]TTGATTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTAAAGGAACATACGATATATTCCGATACTTATTTTGATCTGAATCT</left_flank>
        <right_flank>TTGATTTTTCTCAGATTGCGATAATCGAGAAATTTCGAATTTCTTCCCTT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGTGAATCCGAAGGCGTGGTTTGAAAAAGGACGCGTGGTTCCGAGAAGGAAGACGCCGCCAGCTAGTCTTATCGAATATTATATGGACGCGAAGAATCGTGGATATTTGTGTGAGGAGACGGAAATTGAGAAGGAACGTCAATTGAGTGCTGATGTTAGAGGATACGAGCTGACGGAGACGCTGAAAATCACTTCTGCATTGAAATCGATCGATCAAGTGTTCCACGGAATTCCATCTGGATGCGTCGTTTCATTGGCTGATCGGAAAGTGTTCGCACCGAAAAATGAAGTACATCGCGAGTATTACAGTAGCCAACGATCTGATAAATTGTATTCTTAAGCTCTTCTTTTAGAATTCGTAATAGCTTTTGTTTCGTTTCTGATTGTTGATTTTGTTCGTTCTTTTTTTGTAGATTTTTAGATTTGAAAATTATTATTCGTCATAAAAAATTTAAAGGAACATACGATATATTCCGATACTTATTTTGATCTGAATCTTTTGATTTTTCTCAGATTGCGATAATCGAGAAATTTCGAATTTCTTCCCTTCTGGGAATTCCGTTCACCTCCACATCAGATGGCGTGCGTTTGAAACATGCATCCGAAAACTACAGTAATCTTCATTTCATCAATTTTGAAAGTTTTAATTGAAAGCTACAGTAATCCTCGTTTTTCTCAATGTTAAAAATTACAGTAATTCTCATTGTTTTCAATTTTGAACTTTTTATTCGACAACTACAGTAATCCTCATTTTTCTTGAAAAATGAATCCAAAACTACAGTAATCATTTTTTCAATATTGAAAAATGAATCTGAAAACTACAGTAATCCACTTTCTTCAACTTTGAAAAATGAACAGAAAAAACTACAGTAATTTTTTTTTTCAATTTTAGGGATGAATTCAGACACTTTTCTGGAACTTAATCTAGTCGTAAACATTTTTTGAAACAAAAAAAAACTACATTTCAAAAAAGACACGGAAAACACTTTTGGTACTGAT</canonical>
            <polymorphic>CGGTGAATCCGAAGGCGTGGTTTGAAAAAGGACGCGTGGTTCCGAGAAGGAAGACGCCGCCAGCTAGTCTTATCGAATATTATATGGACGCGAAGAATCGTGGATATTTGTGTGAGGAGACGGAAATTGAGAAGGAACGTCAATTGAGTGCTGATGTTAGAGGATACGAGCTGACGGAGACGCTGAAAATCACTTCTGCATTGAAATCGATCGATCAAGTGTTCCACGGAATTCCATCTGGATGCGTCGTTTCATTGGCTGATCGGAAAGTGTTCGCACCGAAAAATGAAGTACATCGCGAGTATTACAGTAGCCAACGATCTGATAAATTGTATTCTTAAGCTCTTCTTTTAGAATTCGTAATAGCTTTTGTTTCGTTTCTGATTGTTGATTTTGTTCGTTCTTTTTTTGTAGATTTTTAGATTTGAAAATTATTATTCGTCATAAAAAATTTAAAGGAACATACGATATATTCCGATACTTATTTTGATCTGAATCTWTTGATTTTTCTCAGATTGCGATAATCGAGAAATTTCGAATTTCTTCCCTTCTGGGAATTCCGTTCACCTCCACATCAGATGGCGTGCGTTTGAAACATGCATCCGAAAACTACAGTAATCTTCATTTCATCAATTTTGAAAGTTTTAATTGAAAGCTACAGTAATCCTCGTTTTTCTCAATGTTAAAAATTACAGTAATTCTCATTGTTTTCAATTTTGAACTTTTTATTCGACAACTACAGTAATCCTCATTTTTCTTGAAAAATGAATCCAAAACTACAGTAATCATTTTTTCAATATTGAAAAATGAATCTGAAAACTACAGTAATCCACTTTCTTCAACTTTGAAAAATGAACAGAAAAAACTACAGTAATTTTTTTTTTCAATTTTAGGGATGAATTCAGACACTTTTCTGGAACTTAATCTAGTCGTAAACATTTTTTGAAACAAAAAAAAACTACATTTCAAAAAAGACACGGAAAACACTTTTGGTACTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTATTCTTAAGCTCTTCTTTTAGA</pcr_primer_p1>
		<pcr_primer_p2>CATCTGATGTGGAGGTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTGTATTCTTAAGCTCTTCTTTTAGAATTCGTAATAGCTTTTGTTTCGTTTCTGATTGTTGATTTTGTTCGTTCTTTTTTTGTAGATTTTTAGATTTGAAAATTATTATTCGTCATAAAAAATTTAAAGGAACATACGATATATTCCGATACTTATTTTGATCTGAATCTTTTGATTTTTCTCAGATTGCGATAATCGAGAAATTTCGAATTTCTTCCCTTCTGGGAATTCCGTTCACCTCCACATCAGATG</canonical_amplicon>
		<polymorphic_amplicon>TTGTATTCTTAAGCTCTTCTTTTAGAATTCGTAATAGCTTTTGTTTCGTTTCTGATTGTTGATTTTGTTCGTTCTTTTTTTGTAGATTTTTAGATTTGAAAATTATTATTCGTCATAAAAAATTTAAAGGAACATACGATATATTCCGATACTTATTTTGATCTGAATCTWTTGATTTTTCTCAGATTGCGATAATCGAGAAATTTCGAATTTCTTCCCTTCTGGGAATTCCGTTCACCTCCACATCAGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27900</snp_id>
        <super_contig>c003301131.Contig1</super_contig>
        <contig_pos>37770</contig_pos>
        <strand>+</strand>
        <context>TTTTCTCAGA[C/T]TGCGATAATC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGATATATTCCGATACTTATTTTGATCTGAATCTTTTGATTTTTCTCAGA</left_flank>
        <right_flank>TGCGATAATCGAGAAATTTCGAATTTCTTCCCTTCTGGGAATTCCGTTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGTTTGAAAAAGGACGCGTGGTTCCGAGAAGGAAGACGCCGCCAGCTAGTCTTATCGAATATTATATGGACGCGAAGAATCGTGGATATTTGTGTGAGGAGACGGAAATTGAGAAGGAACGTCAATTGAGTGCTGATGTTAGAGGATACGAGCTGACGGAGACGCTGAAAATCACTTCTGCATTGAAATCGATCGATCAAGTGTTCCACGGAATTCCATCTGGATGCGTCGTTTCATTGGCTGATCGGAAAGTGTTCGCACCGAAAAATGAAGTACATCGCGAGTATTACAGTAGCCAACGATCTGATAAATTGTATTCTTAAGCTCTTCTTTTAGAATTCGTAATAGCTTTTGTTTCGTTTCTGATTGTTGATTTTGTTCGTTCTTTTTTTGTAGATTTTTAGATTTGAAAATTATTATTCGTCATAAAAAATTTAAAGGAACATACGATATATTCCGATACTTATTTTGATCTGAATCTTTTGATTTTTCTCAGATTGCGATAATCGAGAAATTTCGAATTTCTTCCCTTCTGGGAATTCCGTTCACCTCCACATCAGATGGCGTGCGTTTGAAACATGCATCCGAAAACTACAGTAATCTTCATTTCATCAATTTTGAAAGTTTTAATTGAAAGCTACAGTAATCCTCGTTTTTCTCAATGTTAAAAATTACAGTAATTCTCATTGTTTTCAATTTTGAACTTTTTATTCGACAACTACAGTAATCCTCATTTTTCTTGAAAAATGAATCCAAAACTACAGTAATCATTTTTTCAATATTGAAAAATGAATCTGAAAACTACAGTAATCCACTTTCTTCAACTTTGAAAAATGAACAGAAAAAACTACAGTAATTTTTTTTTTCAATTTTAGGGATGAATTCAGACACTTTTCTGGAACTTAATCTAGTCGTAAACATTTTTTGAAACAAAAAAAAACTACATTTCAAAAAAGACACGGAAAACACTTTTGGTACTGATTGAACAGATACATTAT</canonical>
            <polymorphic>GTGGTTTGAAAAAGGACGCGTGGTTCCGAGAAGGAAGACGCCGCCAGCTAGTCTTATCGAATATTATATGGACGCGAAGAATCGTGGATATTTGTGTGAGGAGACGGAAATTGAGAAGGAACGTCAATTGAGTGCTGATGTTAGAGGATACGAGCTGACGGAGACGCTGAAAATCACTTCTGCATTGAAATCGATCGATCAAGTGTTCCACGGAATTCCATCTGGATGCGTCGTTTCATTGGCTGATCGGAAAGTGTTCGCACCGAAAAATGAAGTACATCGCGAGTATTACAGTAGCCAACGATCTGATAAATTGTATTCTTAAGCTCTTCTTTTAGAATTCGTAATAGCTTTTGTTTCGTTTCTGATTGTTGATTTTGTTCGTTCTTTTTTTGTAGATTTTTAGATTTGAAAATTATTATTCGTCATAAAAAATTTAAAGGAACATACGATATATTCCGATACTTATTTTGATCTGAATCTTTTGATTTTTCTCAGAYTGCGATAATCGAGAAATTTCGAATTTCTTCCCTTCTGGGAATTCCGTTCACCTCCACATCAGATGGCGTGCGTTTGAAACATGCATCCGAAAACTACAGTAATCTTCATTTCATCAATTTTGAAAGTTTTAATTGAAAGCTACAGTAATCCTCGTTTTTCTCAATGTTAAAAATTACAGTAATTCTCATTGTTTTCAATTTTGAACTTTTTATTCGACAACTACAGTAATCCTCATTTTTCTTGAAAAATGAATCCAAAACTACAGTAATCATTTTTTCAATATTGAAAAATGAATCTGAAAACTACAGTAATCCACTTTCTTCAACTTTGAAAAATGAACAGAAAAAACTACAGTAATTTTTTTTTTCAATTTTAGGGATGAATTCAGACACTTTTCTGGAACTTAATCTAGTCGTAAACATTTTTTGAAACAAAAAAAAACTACATTTCAAAAAAGACACGGAAAACACTTTTGGTACTGATTGAACAGATACATTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTATTCTTAAGCTCTTCTTTTAGA</pcr_primer_p1>
		<pcr_primer_p2>CATCTGATGTGGAGGTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTGTATTCTTAAGCTCTTCTTTTAGAATTCGTAATAGCTTTTGTTTCGTTTCTGATTGTTGATTTTGTTCGTTCTTTTTTTGTAGATTTTTAGATTTGAAAATTATTATTCGTCATAAAAAATTTAAAGGAACATACGATATATTCCGATACTTATTTTGATCTGAATCTTTTGATTTTTCTCAGATTGCGATAATCGAGAAATTTCGAATTTCTTCCCTTCTGGGAATTCCGTTCACCTCCACATCAGATG</canonical_amplicon>
		<polymorphic_amplicon>TTGTATTCTTAAGCTCTTCTTTTAGAATTCGTAATAGCTTTTGTTTCGTTTCTGATTGTTGATTTTGTTCGTTCTTTTTTTGTAGATTTTTAGATTTGAAAATTATTATTCGTCATAAAAAATTTAAAGGAACATACGATATATTCCGATACTTATTTTGATCTGAATCTTTTGATTTTTCTCAGAYTGCGATAATCGAGAAATTTCGAATTTCTTCCCTTCTGGGAATTCCGTTCACCTCCACATCAGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27901</snp_id>
        <super_contig>c003301131.Contig1</super_contig>
        <contig_pos>37781</contig_pos>
        <strand>+</strand>
        <context>TGCGATAATC[G/T]AGAAATTTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATACTTATTTTGATCTGAATCTTTTGATTTTTCTCAGATTGCGATAATC</left_flank>
        <right_flank>AGAAATTTCGAATTTCTTCCCTTCTGGGAATTCCGTTCACCTCCACATCA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGGACGCGTGGTTCCGAGAAGGAAGACGCCGCCAGCTAGTCTTATCGAATATTATATGGACGCGAAGAATCGTGGATATTTGTGTGAGGAGACGGAAATTGAGAAGGAACGTCAATTGAGTGCTGATGTTAGAGGATACGAGCTGACGGAGACGCTGAAAATCACTTCTGCATTGAAATCGATCGATCAAGTGTTCCACGGAATTCCATCTGGATGCGTCGTTTCATTGGCTGATCGGAAAGTGTTCGCACCGAAAAATGAAGTACATCGCGAGTATTACAGTAGCCAACGATCTGATAAATTGTATTCTTAAGCTCTTCTTTTAGAATTCGTAATAGCTTTTGTTTCGTTTCTGATTGTTGATTTTGTTCGTTCTTTTTTTGTAGATTTTTAGATTTGAAAATTATTATTCGTCATAAAAAATTTAAAGGAACATACGATATATTCCGATACTTATTTTGATCTGAATCTTTTGATTTTTCTCAGATTGCGATAATCGAGAAATTTCGAATTTCTTCCCTTCTGGGAATTCCGTTCACCTCCACATCAGATGGCGTGCGTTTGAAACATGCATCCGAAAACTACAGTAATCTTCATTTCATCAATTTTGAAAGTTTTAATTGAAAGCTACAGTAATCCTCGTTTTTCTCAATGTTAAAAATTACAGTAATTCTCATTGTTTTCAATTTTGAACTTTTTATTCGACAACTACAGTAATCCTCATTTTTCTTGAAAAATGAATCCAAAACTACAGTAATCATTTTTTCAATATTGAAAAATGAATCTGAAAACTACAGTAATCCACTTTCTTCAACTTTGAAAAATGAACAGAAAAAACTACAGTAATTTTTTTTTTCAATTTTAGGGATGAATTCAGACACTTTTCTGGAACTTAATCTAGTCGTAAACATTTTTTGAAACAAAAAAAAACTACATTTCAAAAAAGACACGGAAAACACTTTTGGTACTGATTGAACAGATACATTATGGACACATTAT</canonical>
            <polymorphic>AAGGACGCGTGGTTCCGAGAAGGAAGACGCCGCCAGCTAGTCTTATCGAATATTATATGGACGCGAAGAATCGTGGATATTTGTGTGAGGAGACGGAAATTGAGAAGGAACGTCAATTGAGTGCTGATGTTAGAGGATACGAGCTGACGGAGACGCTGAAAATCACTTCTGCATTGAAATCGATCGATCAAGTGTTCCACGGAATTCCATCTGGATGCGTCGTTTCATTGGCTGATCGGAAAGTGTTCGCACCGAAAAATGAAGTACATCGCGAGTATTACAGTAGCCAACGATCTGATAAATTGTATTCTTAAGCTCTTCTTTTAGAATTCGTAATAGCTTTTGTTTCGTTTCTGATTGTTGATTTTGTTCGTTCTTTTTTTGTAGATTTTTAGATTTGAAAATTATTATTCGTCATAAAAAATTTAAAGGAACATACGATATATTCCGATACTTATTTTGATCTGAATCTTTTGATTTTTCTCAGATTGCGATAATCKAGAAATTTCGAATTTCTTCCCTTCTGGGAATTCCGTTCACCTCCACATCAGATGGCGTGCGTTTGAAACATGCATCCGAAAACTACAGTAATCTTCATTTCATCAATTTTGAAAGTTTTAATTGAAAGCTACAGTAATCCTCGTTTTTCTCAATGTTAAAAATTACAGTAATTCTCATTGTTTTCAATTTTGAACTTTTTATTCGACAACTACAGTAATCCTCATTTTTCTTGAAAAATGAATCCAAAACTACAGTAATCATTTTTTCAATATTGAAAAATGAATCTGAAAACTACAGTAATCCACTTTCTTCAACTTTGAAAAATGAACAGAAAAAACTACAGTAATTTTTTTTTTCAATTTTAGGGATGAATTCAGACACTTTTCTGGAACTTAATCTAGTCGTAAACATTTTTTGAAACAAAAAAAAACTACATTTCAAAAAAGACACGGAAAACACTTTTGGTACTGATTGAACAGATACATTATGGACACATTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>314 296 195 134 47 10 4</canonical_bands>
                <polymorphic_bands>324 296 195 134 47 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTATTCTTAAGCTCTTCTTTTAGA</pcr_primer_p1>
		<pcr_primer_p2>CATCTGATGTGGAGGTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTGTATTCTTAAGCTCTTCTTTTAGAATTCGTAATAGCTTTTGTTTCGTTTCTGATTGTTGATTTTGTTCGTTCTTTTTTTGTAGATTTTTAGATTTGAAAATTATTATTCGTCATAAAAAATTTAAAGGAACATACGATATATTCCGATACTTATTTTGATCTGAATCTTTTGATTTTTCTCAGATTGCGATAATCGAGAAATTTCGAATTTCTTCCCTTCTGGGAATTCCGTTCACCTCCACATCAGATG</canonical_amplicon>
		<polymorphic_amplicon>TTGTATTCTTAAGCTCTTCTTTTAGAATTCGTAATAGCTTTTGTTTCGTTTCTGATTGTTGATTTTGTTCGTTCTTTTTTTGTAGATTTTTAGATTTGAAAATTATTATTCGTCATAAAAAATTTAAAGGAACATACGATATATTCCGATACTTATTTTGATCTGAATCTTTTGATTTTTCTCAGATTGCGATAATCKAGAAATTTCGAATTTCTTCCCTTCTGGGAATTCCGTTCACCTCCACATCAGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27902</snp_id>
        <super_contig>c003301131.Contig1</super_contig>
        <contig_pos>37916</contig_pos>
        <strand></strand>
        <context>aaagctacag[T/C]aatcctcgtt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACAGTAATCTTCATTTCATCAATTTTGAAAGTTTTAATTGAAAGCTACAG</left_flank>
        <right_flank>AATCCTCGTTTTTCTCAATGTTAAAAATTACAGTAATTCTCATTGTTTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATACGAGCTGACGGAGACGCTGAAAATCACTTCTGCATTGAAATCGATCGATCAAGTGTTCCACGGAATTCCATCTGGATGCGTCGTTTCATTGGCTGATCGGAAAGTGTTCGCACCGAAAAATGAAGTACATCGCGAGTATTACAGTAGCCAACGATCTGATAAATTGTATTCTTAAGCTCTTCTTTTAGAATTCGTAATAGCTTTTGTTTCGTTTCTGATTGTTGATTTTGTTCGTTCTTTTTTTGTAGATTTTTAGATTTGAAAATTATTATTCGTCATAAAAAATTTAAAGGAACATACGATATATTCCGATACTTATTTTGATCTGAATCTTTTGATTTTTCTCAGATTGCGATAATCGAGAAATTTCGAATTTCTTCCCTTCTGGGAATTCCGTTCACCTCCACATCAGATGGCGTGCGTTTGAAACATGCATCCGAAAACTACAGTAATCTTCATTTCATCAATTTTGAAAGTTTTAATTGAAAGCTACAGTAATCCTCGTTTTTCTCAATGTTAAAAATTACAGTAATTCTCATTGTTTTCAATTTTGAACTTTTTATTCGACAACTACAGTAATCCTCATTTTTCTTGAAAAATGAATCCAAAACTACAGTAATCATTTTTTCAATATTGAAAAATGAATCTGAAAACTACAGTAATCCACTTTCTTCAACTTTGAAAAATGAACAGAAAAAACTACAGTAATTTTTTTTTTCAATTTTAGGGATGAATTCAGACACTTTTCTGGAACTTAATCTAGTCGTAAACATTTTTTGAAACAAAAAAAAACTACATTTCAAAAAAGACACGGAAAACACTTTTGGTACTGATTGAACAGATACATTATGGACACATTATCTGGTGATTGGAATTTTAATGTGTCTAGAGGTAACACATAATTTTTTTAAAGGTTTTCAAGGAAACTTTTTGTTTGAAAAATCGCTATATTGATAGAAGGGGATTTTGAAATTTTGTGAGAGCTGAAACTGGCGA</canonical>
            <polymorphic>GATACGAGCTGACGGAGACGCTGAAAATCACTTCTGCATTGAAATCGATCGATCAAGTGTTCCACGGAATTCCATCTGGATGCGTCGTTTCATTGGCTGATCGGAAAGTGTTCGCACCGAAAAATGAAGTACATCGCGAGTATTACAGTAGCCAACGATCTGATAAATTGTATTCTTAAGCTCTTCTTTTAGAATTCGTAATAGCTTTTGTTTCGTTTCTGATTGTTGATTTTGTTCGTTCTTTTTTTGTAGATTTTTAGATTTGAAAATTATTATTCGTCATAAAAAATTTAAAGGAACATACGATATATTCCGATACTTATTTTGATCTGAATCTTTTGATTTTTCTCAGATTGCGATAATCGAGAAATTTCGAATTTCTTCCCTTCTGGGAATTCCGTTCACCTCCACATCAGATGGCGTGCGTTTGAAACATGCATCCGAAAACTACAGTAATCTTCATTTCATCAATTTTGAAAGTTTTAATTGAAAGCTACAGYAATCCTCGTTTTTCTCAATGTTAAAAATTACAGTAATTCTCATTGTTTTCAATTTTGAACTTTTTATTCGACAACTACAGTAATCCTCATTTTTCTTGAAAAATGAATCCAAAACTACAGTAATCATTTTTTCAATATTGAAAAATGAATCTGAAAACTACAGTAATCCACTTTCTTCAACTTTGAAAAATGAACAGAAAAAACTACAGTAATTTTTTTTTTCAATTTTAGGGATGAATTCAGACACTTTTCTGGAACTTAATCTAGTCGTAAACATTTTTTGAAACAAAAAAAAACTACATTTCAAAAAAGACACGGAAAACACTTTTGGTACTGATTGAACAGATACATTATGGACACATTATCTGGTGATTGGAATTTTAATGTGTCTAGAGGTAACACATAATTTTTTTAAAGGTTTTCAAGGAAACTTTTTGTTTGAAAAATCGCTATATTGATAGAAGGGGATTTTGAAATTTTGTGAGAGCTGAAACTGGCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>305 292 147 47 46 46 43 40 34</canonical_bands>
                <polymorphic_bands>305 292 147 80 47 46 43 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCGAATTTCTTCCCTTCT</pcr_primer_p1>
		<pcr_primer_p2>CGACTAGATTAAGTTCCAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>401</pcr_amplicon_size>
		<canonical_amplicon>ATTTCGAATTTCTTCCCTTCTGGGAATTCCGTTCACCTCCACATCAGATGGCGTGCGTTTGAAACATGCATCCGAAAACTACAGTAATCTTCATTTCATCAATTTTGAAAGTTTTAATTGAAAGCTACAGTAATCCTCGTTTTTCTCAATGTTAAAAATTACAGTAATTCTCATTGTTTTCAATTTTGAACTTTTTATTCGACAACTACAGTAATCCTCATTTTTCTTGAAAAATGAATCCAAAACTACAGTAATCATTTTTTCAATATTGAAAAATGAATCTGAAAACTACAGTAATCCACTTTCTTCAACTTTGAAAAATGAACAGAAAAAACTACAGTAATTTTTTTTTTCAATTTTAGGGATGAATTCAGACACTTTTCTGGAACTTAATCTAGTCG</canonical_amplicon>
		<polymorphic_amplicon>ATTTCGAATTTCTTCCCTTCTGGGAATTCCGTTCACCTCCACATCAGATGGCGTGCGTTTGAAACATGCATCCGAAAACTACAGTAATCTTCATTTCATCAATTTTGAAAGTTTTAATTGAAAGCTACAGYAATCCTCGTTTTTCTCAATGTTAAAAATTACAGTAATTCTCATTGTTTTCAATTTTGAACTTTTTATTCGACAACTACAGTAATCCTCATTTTTCTTGAAAAATGAATCCAAAACTACAGTAATCATTTTTTCAATATTGAAAAATGAATCTGAAAACTACAGTAATCCACTTTCTTCAACTTTGAAAAATGAACAGAAAAAACTACAGTAATTTTTTTTTTCAATTTTAGGGATGAATTCAGACACTTTTCTGGAACTTAATCTAGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27903</snp_id>
        <super_contig>c003301131.Contig1</super_contig>
        <contig_pos>37977</contig_pos>
        <strand></strand>
        <context>aattttgaac[T/A]ttttattcga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTCTCAATGTTAAAAATTACAGTAATTCTCATTGTTTTCAATTTTGAAC</left_flank>
        <right_flank>TTTTATTCGACAACTACAGTAATCCTCATTTTTCTTGAAAAATGAATCCA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACGGAATTCCATCTGGATGCGTCGTTTCATTGGCTGATCGGAAAGTGTTCGCACCGAAAAATGAAGTACATCGCGAGTATTACAGTAGCCAACGATCTGATAAATTGTATTCTTAAGCTCTTCTTTTAGAATTCGTAATAGCTTTTGTTTCGTTTCTGATTGTTGATTTTGTTCGTTCTTTTTTTGTAGATTTTTAGATTTGAAAATTATTATTCGTCATAAAAAATTTAAAGGAACATACGATATATTCCGATACTTATTTTGATCTGAATCTTTTGATTTTTCTCAGATTGCGATAATCGAGAAATTTCGAATTTCTTCCCTTCTGGGAATTCCGTTCACCTCCACATCAGATGGCGTGCGTTTGAAACATGCATCCGAAAACTACAGTAATCTTCATTTCATCAATTTTGAAAGTTTTAATTGAAAGCTACAGTAATCCTCGTTTTTCTCAATGTTAAAAATTACAGTAATTCTCATTGTTTTCAATTTTGAACTTTTTATTCGACAACTACAGTAATCCTCATTTTTCTTGAAAAATGAATCCAAAACTACAGTAATCATTTTTTCAATATTGAAAAATGAATCTGAAAACTACAGTAATCCACTTTCTTCAACTTTGAAAAATGAACAGAAAAAACTACAGTAATTTTTTTTTTCAATTTTAGGGATGAATTCAGACACTTTTCTGGAACTTAATCTAGTCGTAAACATTTTTTGAAACAAAAAAAAACTACATTTCAAAAAAGACACGGAAAACACTTTTGGTACTGATTGAACAGATACATTATGGACACATTATCTGGTGATTGGAATTTTAATGTGTCTAGAGGTAACACATAATTTTTTTAAAGGTTTTCAAGGAAACTTTTTGTTTGAAAAATCGCTATATTGATAGAAGGGGATTTTGAAATTTTGTGAGAGCTGAAACTGGCGAGTGCGTTCCAAAACTTCCCGGGGGTGTCTAGATAGGCTATCCTTTACCTATCCTACAACTT</canonical>
            <polymorphic>CCACGGAATTCCATCTGGATGCGTCGTTTCATTGGCTGATCGGAAAGTGTTCGCACCGAAAAATGAAGTACATCGCGAGTATTACAGTAGCCAACGATCTGATAAATTGTATTCTTAAGCTCTTCTTTTAGAATTCGTAATAGCTTTTGTTTCGTTTCTGATTGTTGATTTTGTTCGTTCTTTTTTTGTAGATTTTTAGATTTGAAAATTATTATTCGTCATAAAAAATTTAAAGGAACATACGATATATTCCGATACTTATTTTGATCTGAATCTTTTGATTTTTCTCAGATTGCGATAATCGAGAAATTTCGAATTTCTTCCCTTCTGGGAATTCCGTTCACCTCCACATCAGATGGCGTGCGTTTGAAACATGCATCCGAAAACTACAGTAATCTTCATTTCATCAATTTTGAAAGTTTTAATTGAAAGCTACAGTAATCCTCGTTTTTCTCAATGTTAAAAATTACAGTAATTCTCATTGTTTTCAATTTTGAACWTTTTATTCGACAACTACAGTAATCCTCATTTTTCTTGAAAAATGAATCCAAAACTACAGTAATCATTTTTTCAATATTGAAAAATGAATCTGAAAACTACAGTAATCCACTTTCTTCAACTTTGAAAAATGAACAGAAAAAACTACAGTAATTTTTTTTTTCAATTTTAGGGATGAATTCAGACACTTTTCTGGAACTTAATCTAGTCGTAAACATTTTTTGAAACAAAAAAAAACTACATTTCAAAAAAGACACGGAAAACACTTTTGGTACTGATTGAACAGATACATTATGGACACATTATCTGGTGATTGGAATTTTAATGTGTCTAGAGGTAACACATAATTTTTTTAAAGGTTTTCAAGGAAACTTTTTGTTTGAAAAATCGCTATATTGATAGAAGGGGATTTTGAAATTTTGTGAGAGCTGAAACTGGCGAGTGCGTTCCAAAACTTCCCGGGGGTGTCTAGATAGGCTATCCTTTACCTATCCTACAACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCGAATTTCTTCCCTTCT</pcr_primer_p1>
		<pcr_primer_p2>CGACTAGATTAAGTTCCAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>401</pcr_amplicon_size>
		<canonical_amplicon>ATTTCGAATTTCTTCCCTTCTGGGAATTCCGTTCACCTCCACATCAGATGGCGTGCGTTTGAAACATGCATCCGAAAACTACAGTAATCTTCATTTCATCAATTTTGAAAGTTTTAATTGAAAGCTACAGTAATCCTCGTTTTTCTCAATGTTAAAAATTACAGTAATTCTCATTGTTTTCAATTTTGAACTTTTTATTCGACAACTACAGTAATCCTCATTTTTCTTGAAAAATGAATCCAAAACTACAGTAATCATTTTTTCAATATTGAAAAATGAATCTGAAAACTACAGTAATCCACTTTCTTCAACTTTGAAAAATGAACAGAAAAAACTACAGTAATTTTTTTTTTCAATTTTAGGGATGAATTCAGACACTTTTCTGGAACTTAATCTAGTCG</canonical_amplicon>
		<polymorphic_amplicon>ATTTCGAATTTCTTCCCTTCTGGGAATTCCGTTCACCTCCACATCAGATGGCGTGCGTTTGAAACATGCATCCGAAAACTACAGTAATCTTCATTTCATCAATTTTGAAAGTTTTAATTGAAAGCTACAGTAATCCTCGTTTTTCTCAATGTTAAAAATTACAGTAATTCTCATTGTTTTCAATTTTGAACWTTTTATTCGACAACTACAGTAATCCTCATTTTTCTTGAAAAATGAATCCAAAACTACAGTAATCATTTTTTCAATATTGAAAAATGAATCTGAAAACTACAGTAATCCACTTTCTTCAACTTTGAAAAATGAACAGAAAAAACTACAGTAATTTTTTTTTTCAATTTTAGGGATGAATTCAGACACTTTTCTGGAACTTAATCTAGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27904</snp_id>
        <super_contig>c003301131.Contig1</super_contig>
        <contig_pos>38019</contig_pos>
        <strand></strand>
        <context>ttcttgaaaa[A/T]tgaatccaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTGAACTTTTTATTCGACAACTACAGTAATCCTCATTTTTCTTGAAAA</left_flank>
        <right_flank>TGAATCCAAAACTACAGTAATCATTTTTTCAATATTGAAAAATGAATCTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAGTGTTCGCACCGAAAAATGAAGTACATCGCGAGTATTACAGTAGCCAACGATCTGATAAATTGTATTCTTAAGCTCTTCTTTTAGAATTCGTAATAGCTTTTGTTTCGTTTCTGATTGTTGATTTTGTTCGTTCTTTTTTTGTAGATTTTTAGATTTGAAAATTATTATTCGTCATAAAAAATTTAAAGGAACATACGATATATTCCGATACTTATTTTGATCTGAATCTTTTGATTTTTCTCAGATTGCGATAATCGAGAAATTTCGAATTTCTTCCCTTCTGGGAATTCCGTTCACCTCCACATCAGATGGCGTGCGTTTGAAACATGCATCCGAAAACTACAGTAATCTTCATTTCATCAATTTTGAAAGTTTTAATTGAAAGCTACAGTAATCCTCGTTTTTCTCAATGTTAAAAATTACAGTAATTCTCATTGTTTTCAATTTTGAACTTTTTATTCGACAACTACAGTAATCCTCATTTTTCTTGAAAAATGAATCCAAAACTACAGTAATCATTTTTTCAATATTGAAAAATGAATCTGAAAACTACAGTAATCCACTTTCTTCAACTTTGAAAAATGAACAGAAAAAACTACAGTAATTTTTTTTTTCAATTTTAGGGATGAATTCAGACACTTTTCTGGAACTTAATCTAGTCGTAAACATTTTTTGAAACAAAAAAAAACTACATTTCAAAAAAGACACGGAAAACACTTTTGGTACTGATTGAACAGATACATTATGGACACATTATCTGGTGATTGGAATTTTAATGTGTCTAGAGGTAACACATAATTTTTTTAAAGGTTTTCAAGGAAACTTTTTGTTTGAAAAATCGCTATATTGATAGAAGGGGATTTTGAAATTTTGTGAGAGCTGAAACTGGCGAGTGCGTTCCAAAACTTCCCGGGGGTGTCTAGATAGGCTATCCTTTACCTATCCTACAACTTTCATCATAATCTGAATTGGCGAGTTGTTGTGGTTCCCTTGTT</canonical>
            <polymorphic>GAAAGTGTTCGCACCGAAAAATGAAGTACATCGCGAGTATTACAGTAGCCAACGATCTGATAAATTGTATTCTTAAGCTCTTCTTTTAGAATTCGTAATAGCTTTTGTTTCGTTTCTGATTGTTGATTTTGTTCGTTCTTTTTTTGTAGATTTTTAGATTTGAAAATTATTATTCGTCATAAAAAATTTAAAGGAACATACGATATATTCCGATACTTATTTTGATCTGAATCTTTTGATTTTTCTCAGATTGCGATAATCGAGAAATTTCGAATTTCTTCCCTTCTGGGAATTCCGTTCACCTCCACATCAGATGGCGTGCGTTTGAAACATGCATCCGAAAACTACAGTAATCTTCATTTCATCAATTTTGAAAGTTTTAATTGAAAGCTACAGTAATCCTCGTTTTTCTCAATGTTAAAAATTACAGTAATTCTCATTGTTTTCAATTTTGAACTTTTTATTCGACAACTACAGTAATCCTCATTTTTCTTGAAAAWTGAATCCAAAACTACAGTAATCATTTTTTCAATATTGAAAAATGAATCTGAAAACTACAGTAATCCACTTTCTTCAACTTTGAAAAATGAACAGAAAAAACTACAGTAATTTTTTTTTTCAATTTTAGGGATGAATTCAGACACTTTTCTGGAACTTAATCTAGTCGTAAACATTTTTTGAAACAAAAAAAAACTACATTTCAAAAAAGACACGGAAAACACTTTTGGTACTGATTGAACAGATACATTATGGACACATTATCTGGTGATTGGAATTTTAATGTGTCTAGAGGTAACACATAATTTTTTTAAAGGTTTTCAAGGAAACTTTTTGTTTGAAAAATCGCTATATTGATAGAAGGGGATTTTGAAATTTTGTGAGAGCTGAAACTGGCGAGTGCGTTCCAAAACTTCCCGGGGGTGTCTAGATAGGCTATCCTTTACCTATCCTACAACTTTCATCATAATCTGAATTGGCGAGTTGTTGTGGTTCCCTTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCGAATTTCTTCCCTTCT</pcr_primer_p1>
		<pcr_primer_p2>CGACTAGATTAAGTTCCAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>401</pcr_amplicon_size>
		<canonical_amplicon>ATTTCGAATTTCTTCCCTTCTGGGAATTCCGTTCACCTCCACATCAGATGGCGTGCGTTTGAAACATGCATCCGAAAACTACAGTAATCTTCATTTCATCAATTTTGAAAGTTTTAATTGAAAGCTACAGTAATCCTCGTTTTTCTCAATGTTAAAAATTACAGTAATTCTCATTGTTTTCAATTTTGAACTTTTTATTCGACAACTACAGTAATCCTCATTTTTCTTGAAAAATGAATCCAAAACTACAGTAATCATTTTTTCAATATTGAAAAATGAATCTGAAAACTACAGTAATCCACTTTCTTCAACTTTGAAAAATGAACAGAAAAAACTACAGTAATTTTTTTTTTCAATTTTAGGGATGAATTCAGACACTTTTCTGGAACTTAATCTAGTCG</canonical_amplicon>
		<polymorphic_amplicon>ATTTCGAATTTCTTCCCTTCTGGGAATTCCGTTCACCTCCACATCAGATGGCGTGCGTTTGAAACATGCATCCGAAAACTACAGTAATCTTCATTTCATCAATTTTGAAAGTTTTAATTGAAAGCTACAGTAATCCTCGTTTTTCTCAATGTTAAAAATTACAGTAATTCTCATTGTTTTCAATTTTGAACTTTTTATTCGACAACTACAGTAATCCTCATTTTTCTTGAAAAWTGAATCCAAAACTACAGTAATCATTTTTTCAATATTGAAAAATGAATCTGAAAACTACAGTAATCCACTTTCTTCAACTTTGAAAAATGAACAGAAAAAACTACAGTAATTTTTTTTTTCAATTTTAGGGATGAATTCAGACACTTTTCTGGAACTTAATCTAGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27905</snp_id>
        <super_contig>c003301138.Contig1</super_contig>
        <contig_pos>8715</contig_pos>
        <strand>+</strand>
        <context>CTCTTTTATA[C/T]ATTCCKGTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATATTCTTCACGGTAATGAATGTATCTTTCTTTGCATCTACTCTTTTATA</left_flank>
        <right_flank>ATTCCTGTAATGATAAGTGTTCGAAAAATGTCAAATTTAAGATCAGTTCA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCTACACTTAATATATCTTTCTTTATTTCTGCTATTTCGTACATCCCTATATTGATAAGTGTTCAAAAGAAGTCCCATTTGAGATCAGTCCAGGAATCGAAACCTCAAATTTACATTTTCTCCTGCTTTATTTCTTCCCGTCCTCACAAAAATACATTATATTATCCATTAGGAATATGAAATACTTTACACTATTTGTTTATTTCCAAAGATGTTATCAATTTAATTGTATTCTTTATTAGTTTATCAAAAGTGCAAAATGGGACACTGATCTCTATAGGCTGGTCAGACGTTTTATTCTGGTAGGGCTTTGTGTAGACTTGTTAAAATTGGCTTTTTGTTCGGCGCCAATCGGCAAGAAAGAAATAAAAAAATTTGTAATTCAAATCGAAAATATTGCCGTTTGACGTCATTAATTTTTATGAAAATCTATGTTTTCTTCTTTCAGATATTCTTCACGGTAATGAATGTATCTTTCTTTGCATCTACTCTTTTATACATTCCTGTAATGATAAGTGTTCGAAAAATGTCAAATTTAAGATCAGTTCAAGAATCGAAACCTCAAATTTACATTTTCTGGCAAACAATGACTGCGTTGGTTGTGGAAATGTTAAGCTGAATAATCACAAGCCCGTGAACCATCTGATTTGTTCAAGATGTATATCCCTCTACTCTTTTTCTCTTTATGGTTGTTTTCACTCGTATATGGGATGTATTTTCTATTCCAGTTATCATTCAGATATCTTACCTGACTTGCAACAGACGAAATGTTGTCACTCTGATTTCTTCATTTAAAGGAATGAAACTGATTAAAGAATTAATTAAACCCGAAGTGACTTCTAGAGTGAGTCCAGATCCAAGAAGACATATGGTTTGATAAGGGAAACTGATAATTATGAAGTTTTTTTTCTGCAAATTTTTTAAAGGTCCTAATAAAAATTTTGACATTTATAATACCCCAGCAAATGGAACATTTTGGAACAACTGCTAGTTTCCCTT</canonical>
            <polymorphic>CGCTACACTTAATATATCTTTCTTTATTTCTGCTATTTCGTACATCCCTATATTGATAAGTGTTCAAAAGAAGTCCCATTTGAGATCAGTCCAGGAATCGAAACCTCAAATTTACATTTTCTCCTGCTTTATTTCTTCCCGTCCTCACAAAAATACATTATATTATCCATTAGGAATATGAAATACTTTACACTATTTGTTTATTTCCAAAGATGTTATCAATTTAATTGTATTCTTTATTAGTTTATCAAAAGTGCAAAATGGGACACTGATCTCTATAGGCTGGTCAGACGTTTTATTCTGGTAGGGCTTTGTGTAGACTTGTTAAAATTGGCTTTTTGTTCGGCGCCAATCGGCAAGAAAGAAATAAAAAAATTTGTAATTCAAATCGAAAATATTGCCGTTTGACGTCATTAATTTTTATGAAAATCTATGTTTTCTTCTTTCAGATATTCTTCACGGTAATGAATGTATCTTTCTTTGCATCTACTCTTTTATAYATTCCTGTAATGATAAGTGTTCGAAAAATGTCAAATTTAAGATCAGTTCAAGAATCGAAACCTCAAATTTACATTTTCTGGCAAACAATGACTGCGTTGGTTGTGGAAATGTTAAGCTGAATAATCACAAGCCCGTGAACCATCTGATTTGTTCAAGATGTATATCCCTCTACTCTTTTTCTCTTTATGGTTGTTTTCACTCGTATATGGGATGTATTTTCTATTCCAGTTATCATTCAGATATCTTACCTGACTTGCAACAGACGAAATGTTGTCACTCTGATTTCTTCATTTAAAGGAATGAAACTGATTAAAGAATTAATTAAACCCGAAGTGACTTCTAGAGTGAGTCCAGATCCAAGAAGACATATGGTTTGATAAGGGAAACTGATAATTATGAAGTTTTTTTTCTGCAAATTTTTTAAAGGTCCTAATAAAAATTTTGACATTTATAATACCCCAGCAAATGGAACATTTTGGAACAACTGCTAGTTTCCCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTCAGATATTCTTCACGGTAA</pcr_primer_p1>
		<pcr_primer_p2>CCATAAAGAGAAAAAGAGTAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTTTCAGATATTCTTCACGGTAATGAATGTATCTTTCTTTGCATCTACTCTTTTATACATTCCTGTAATGATAAGTGTTCGAAAAATGTCAAATTTAAGATCAGTTCAAGAATCGAAACCTCAAATTTACATTTTCTGGCAAACAATGACTGCGTTGGTTGTGGAAATGTTAAGCTGAATAATCACAAGCCCGTGAACCATCTGATTTGTTCAAGATGTATATCCCTCTACTCTTTTTCTCTTTATGG</canonical_amplicon>
		<polymorphic_amplicon>CTTTCAGATATTCTTCACGGTAATGAATGTATCTTTCTTTGCATCTACTCTTTTATAYATTCCTGTAATGATAAGTGTTCGAAAAATGTCAAATTTAAGATCAGTTCAAGAATCGAAACCTCAAATTTACATTTTCTGGCAAACAATGACTGCGTTGGTTGTGGAAATGTTAAGCTGAATAATCACAAGCCCGTGAACCATCTGATTTGTTCAAGATGTATATCCCTCTACTCTTTTTCTCTTTATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27906</snp_id>
        <super_contig>c003301138.Contig1</super_contig>
        <contig_pos>8721</contig_pos>
        <strand>+</strand>
        <context>TATAYATTCC[G/T]GTAATGATAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCACGGTAATGAATGTATCTTTCTTTGCATCTACTCTTTTATACATTCC</left_flank>
        <right_flank>GTAATGATAAGTGTTCGAAAAATGTCAAATTTAAGATCAGTTCAAGAATC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTAATATATCTTTCTTTATTTCTGCTATTTCGTACATCCCTATATTGATAAGTGTTCAAAAGAAGTCCCATTTGAGATCAGTCCAGGAATCGAAACCTCAAATTTACATTTTCTCCTGCTTTATTTCTTCCCGTCCTCACAAAAATACATTATATTATCCATTAGGAATATGAAATACTTTACACTATTTGTTTATTTCCAAAGATGTTATCAATTTAATTGTATTCTTTATTAGTTTATCAAAAGTGCAAAATGGGACACTGATCTCTATAGGCTGGTCAGACGTTTTATTCTGGTAGGGCTTTGTGTAGACTTGTTAAAATTGGCTTTTTGTTCGGCGCCAATCGGCAAGAAAGAAATAAAAAAATTTGTAATTCAAATCGAAAATATTGCCGTTTGACGTCATTAATTTTTATGAAAATCTATGTTTTCTTCTTTCAGATATTCTTCACGGTAATGAATGTATCTTTCTTTGCATCTACTCTTTTATACATTCCTGTAATGATAAGTGTTCGAAAAATGTCAAATTTAAGATCAGTTCAAGAATCGAAACCTCAAATTTACATTTTCTGGCAAACAATGACTGCGTTGGTTGTGGAAATGTTAAGCTGAATAATCACAAGCCCGTGAACCATCTGATTTGTTCAAGATGTATATCCCTCTACTCTTTTTCTCTTTATGGTTGTTTTCACTCGTATATGGGATGTATTTTCTATTCCAGTTATCATTCAGATATCTTACCTGACTTGCAACAGACGAAATGTTGTCACTCTGATTTCTTCATTTAAAGGAATGAAACTGATTAAAGAATTAATTAAACCCGAAGTGACTTCTAGAGTGAGTCCAGATCCAAGAAGACATATGGTTTGATAAGGGAAACTGATAATTATGAAGTTTTTTTTCTGCAAATTTTTTAAAGGTCCTAATAAAAATTTTGACATTTATAATACCCCAGCAAATGGAACATTTTGGAACAACTGCTAGTTTCCCTTTTGGAG</canonical>
            <polymorphic>ACTTAATATATCTTTCTTTATTTCTGCTATTTCGTACATCCCTATATTGATAAGTGTTCAAAAGAAGTCCCATTTGAGATCAGTCCAGGAATCGAAACCTCAAATTTACATTTTCTCCTGCTTTATTTCTTCCCGTCCTCACAAAAATACATTATATTATCCATTAGGAATATGAAATACTTTACACTATTTGTTTATTTCCAAAGATGTTATCAATTTAATTGTATTCTTTATTAGTTTATCAAAAGTGCAAAATGGGACACTGATCTCTATAGGCTGGTCAGACGTTTTATTCTGGTAGGGCTTTGTGTAGACTTGTTAAAATTGGCTTTTTGTTCGGCGCCAATCGGCAAGAAAGAAATAAAAAAATTTGTAATTCAAATCGAAAATATTGCCGTTTGACGTCATTAATTTTTATGAAAATCTATGTTTTCTTCTTTCAGATATTCTTCACGGTAATGAATGTATCTTTCTTTGCATCTACTCTTTTATACATTCCKGTAATGATAAGTGTTCGAAAAATGTCAAATTTAAGATCAGTTCAAGAATCGAAACCTCAAATTTACATTTTCTGGCAAACAATGACTGCGTTGGTTGTGGAAATGTTAAGCTGAATAATCACAAGCCCGTGAACCATCTGATTTGTTCAAGATGTATATCCCTCTACTCTTTTTCTCTTTATGGTTGTTTTCACTCGTATATGGGATGTATTTTCTATTCCAGTTATCATTCAGATATCTTACCTGACTTGCAACAGACGAAATGTTGTCACTCTGATTTCTTCATTTAAAGGAATGAAACTGATTAAAGAATTAATTAAACCCGAAGTGACTTCTAGAGTGAGTCCAGATCCAAGAAGACATATGGTTTGATAAGGGAAACTGATAATTATGAAGTTTTTTTTCTGCAAATTTTTTAAAGGTCCTAATAAAAATTTTGACATTTATAATACCCCAGCAAATGGAACATTTTGGAACAACTGCTAGTTTCCCTTTTGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTCACGGTAATGAATGTATCT</pcr_primer_p1>
		<pcr_primer_p2>GAGTGAAAACAACCATAAAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTTCACGGTAATGAATGTATCTTTCTTTGCATCTACTCTTTTATACATTCCTGTAATGATAAGTGTTCGAAAAATGTCAAATTTAAGATCAGTTCAAGAATCGAAACCTCAAATTTACATTTTCTGGCAAACAATGACTGCGTTGGTTGTGGAAATGTTAAGCTGAATAATCACAAGCCCGTGAACCATCTGATTTGTTCAAGATGTATATCCCTCTACTCTTTTTCTCTTTATGGTTGTTTTCACTC</canonical_amplicon>
		<polymorphic_amplicon>TCTTCACGGTAATGAATGTATCTTTCTTTGCATCTACTCTTTTATACATTCCKGTAATGATAAGTGTTCGAAAAATGTCAAATTTAAGATCAGTTCAAGAATCGAAACCTCAAATTTACATTTTCTGGCAAACAATGACTGCGTTGGTTGTGGAAATGTTAAGCTGAATAATCACAAGCCCGTGAACCATCTGATTTGTTCAAGATGTATATCCCTCTACTCTTTTTCTCTTTATGGTTGTTTTCACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27907</snp_id>
        <super_contig>c003301138.Contig1</super_contig>
        <contig_pos>8734</contig_pos>
        <strand>+</strand>
        <context>AATGATAAGT[G/T]TTCGAAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGTATCTTTCTTTGCATCTACTCTTTTATACATTCCTGTAATGATAAGT</left_flank>
        <right_flank>TTCGAAAAATGTCAAATTTAAGATCAGTTCAAGAATCGAAACCTCAAATT</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTTATTTCTGCTATTTCGTACATCCCTATATTGATAAGTGTTCAAAAGAAGTCCCATTTGAGATCAGTCCAGGAATCGAAACCTCAAATTTACATTTTCTCCTGCTTTATTTCTTCCCGTCCTCACAAAAATACATTATATTATCCATTAGGAATATGAAATACTTTACACTATTTGTTTATTTCCAAAGATGTTATCAATTTAATTGTATTCTTTATTAGTTTATCAAAAGTGCAAAATGGGACACTGATCTCTATAGGCTGGTCAGACGTTTTATTCTGGTAGGGCTTTGTGTAGACTTGTTAAAATTGGCTTTTTGTTCGGCGCCAATCGGCAAGAAAGAAATAAAAAAATTTGTAATTCAAATCGAAAATATTGCCGTTTGACGTCATTAATTTTTATGAAAATCTATGTTTTCTTCTTTCAGATATTCTTCACGGTAATGAATGTATCTTTCTTTGCATCTACTCTTTTATACATTCCTGTAATGATAAGTGTTCGAAAAATGTCAAATTTAAGATCAGTTCAAGAATCGAAACCTCAAATTTACATTTTCTGGCAAACAATGACTGCGTTGGTTGTGGAAATGTTAAGCTGAATAATCACAAGCCCGTGAACCATCTGATTTGTTCAAGATGTATATCCCTCTACTCTTTTTCTCTTTATGGTTGTTTTCACTCGTATATGGGATGTATTTTCTATTCCAGTTATCATTCAGATATCTTACCTGACTTGCAACAGACGAAATGTTGTCACTCTGATTTCTTCATTTAAAGGAATGAAACTGATTAAAGAATTAATTAAACCCGAAGTGACTTCTAGAGTGAGTCCAGATCCAAGAAGACATATGGTTTGATAAGGGAAACTGATAATTATGAAGTTTTTTTTCTGCAAATTTTTTAAAGGTCCTAATAAAAATTTTGACATTTATAATACCCCAGCAAATGGAACATTTTGGAACAACTGCTAGTTTCCCTTTTGGAGGAAAATAAGGTTT</canonical>
            <polymorphic>TTCTTTATTTCTGCTATTTCGTACATCCCTATATTGATAAGTGTTCAAAAGAAGTCCCATTTGAGATCAGTCCAGGAATCGAAACCTCAAATTTACATTTTCTCCTGCTTTATTTCTTCCCGTCCTCACAAAAATACATTATATTATCCATTAGGAATATGAAATACTTTACACTATTTGTTTATTTCCAAAGATGTTATCAATTTAATTGTATTCTTTATTAGTTTATCAAAAGTGCAAAATGGGACACTGATCTCTATAGGCTGGTCAGACGTTTTATTCTGGTAGGGCTTTGTGTAGACTTGTTAAAATTGGCTTTTTGTTCGGCGCCAATCGGCAAGAAAGAAATAAAAAAATTTGTAATTCAAATCGAAAATATTGCCGTTTGACGTCATTAATTTTTATGAAAATCTATGTTTTCTTCTTTCAGATATTCTTCACGGTAATGAATGTATCTTTCTTTGCATCTACTCTTTTATACATTCCTGTAATGATAAGTKTTCGAAAAATGTCAAATTTAAGATCAGTTCAAGAATCGAAACCTCAAATTTACATTTTCTGGCAAACAATGACTGCGTTGGTTGTGGAAATGTTAAGCTGAATAATCACAAGCCCGTGAACCATCTGATTTGTTCAAGATGTATATCCCTCTACTCTTTTTCTCTTTATGGTTGTTTTCACTCGTATATGGGATGTATTTTCTATTCCAGTTATCATTCAGATATCTTACCTGACTTGCAACAGACGAAATGTTGTCACTCTGATTTCTTCATTTAAAGGAATGAAACTGATTAAAGAATTAATTAAACCCGAAGTGACTTCTAGAGTGAGTCCAGATCCAAGAAGACATATGGTTTGATAAGGGAAACTGATAATTATGAAGTTTTTTTTCTGCAAATTTTTTAAAGGTCCTAATAAAAATTTTGACATTTATAATACCCCAGCAAATGGAACATTTTGGAACAACTGCTAGTTTCCCTTTTGGAGGAAAATAAGGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>171 143 86 85 78 64 62 60 59 48 45 43 22 12 12 10</canonical_bands>
                <polymorphic_bands>171 146 143 85 78 64 62 59 48 45 43 22 12 12 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTCACGGTAATGAATGTATCT</pcr_primer_p1>
		<pcr_primer_p2>GAGTGAAAACAACCATAAAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTTCACGGTAATGAATGTATCTTTCTTTGCATCTACTCTTTTATACATTCCTGTAATGATAAGTGTTCGAAAAATGTCAAATTTAAGATCAGTTCAAGAATCGAAACCTCAAATTTACATTTTCTGGCAAACAATGACTGCGTTGGTTGTGGAAATGTTAAGCTGAATAATCACAAGCCCGTGAACCATCTGATTTGTTCAAGATGTATATCCCTCTACTCTTTTTCTCTTTATGGTTGTTTTCACTC</canonical_amplicon>
		<polymorphic_amplicon>TCTTCACGGTAATGAATGTATCTTTCTTTGCATCTACTCTTTTATACATTCCTGTAATGATAAGTKTTCGAAAAATGTCAAATTTAAGATCAGTTCAAGAATCGAAACCTCAAATTTACATTTTCTGGCAAACAATGACTGCGTTGGTTGTGGAAATGTTAAGCTGAATAATCACAAGCCCGTGAACCATCTGATTTGTTCAAGATGTATATCCCTCTACTCTTTTTCTCTTTATGGTTGTTTTCACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27910</snp_id>
        <super_contig>c003400673.Contig1</super_contig>
        <contig_pos>31846</contig_pos>
        <strand></strand>
        <context>aaataagcga[A/C]aatgaaccga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCTTTTTTTTTAATGGCAGAGGAGGTCTGAAAATAGGCAAAAATAAGCGA</left_flank>
        <right_flank>AATGAACCGAAATAGATAAACATAGAGCAAAAATGGGTCAAAATAGCTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTTAGATAAAAAAATCCACATTTTTGACCATTTTTACCCTAAAAACCATCATTCTGGACCCAAAAATCCAAATTTTCAGGCGATGCGCGACTTCCAGCAAATGTTCCCAAACGTTTGCGCCGCGCAAATCGAGTACGTCCTTCGGAAATACGACGGAGACGTGTCGGCGACGATCAACGAGCTACTCTACGATAATGGCAACGATGGTGTGAGGGTTCTAATTTTTTGAAAATTCTCATTTCCGAACTGAAAAACAGCTAAAATCACGCTTTTTGAGGCTAAAAAAAGCTGAAAATGTCTCTAAAACCCTCATTTTTTGGGCTCTAAAGGGGGGGGGGGGGAATTCGTTATTATTTTCGAAAAACAAATTGAAATTTCTGAACGAAAAACACACAAATATTTACTCAAGAGGGGAGGGAGAGAGACACATTTTTTACTTTTTTTGAGCTTTTTTTTTAATGGCAGAGGAGGTCTGAAAATAGGCAAAAATAAGCGAAAATGAACCGAAATAGATAAACATAGAGCAAAAATGGGTCAAAATAGCTTCGAAATGAGCGACAAAAAGCTGAAAATTGACCAAAAACTAGCAGAACCGAGGCTAAAATCGACTGAAAAATATGCCAGAATATACCAAATAAATGCTGAAAATTGACTAAAAATAGATCAGGATTGAGTTGCAGAAGGCAAAAAAAAACGCTGAAAAGAGGGCTGAAATTTTGCCGAAAATAGGTCTAAAATGAGATAAAATGGGTCAAAAAGGACTGAAAATTTATTAAAAATAGGTCGAAAATGAGCAAAAACGGGCTGAAATAGAGCTAAAAAGATTCGAAAATAGATCAAATTTGGCCCAAAATAGATCAAAAATGAGCAAAAATGGGCTAAAATAACGCCAAAATAGGTCAAAATTGTCAAAAATGAGCTAAAATGGGTCAAAAATGAGCAAAAAACGAGCTAAAATAGAGCTTAAAAGATCGAAAATAGGTCAAAATTAAGCTAA</canonical>
            <polymorphic>CATTTTAGATAAAAAAATCCACATTTTTGACCATTTTTACCCTAAAAACCATCATTCTGGACCCAAAAATCCAAATTTTCAGGCGATGCGCGACTTCCAGCAAATGTTCCCAAACGTTTGCGCCGCGCAAATCGAGTACGTCCTTCGGAAATACGACGGAGACGTGTCGGCGACGATCAACGAGCTACTCTACGATAATGGCAACGATGGTGTGAGGGTTCTAATTTTTTGAAAATTCTCATTTCCGAACTGAAAAACAGCTAAAATCACGCTTTTTGAGGCTAAAAAAAGCTGAAAATGTCTCTAAAACCCTCATTTTTTGGGCTCTAAAGGGGGGGGGGGGGAATTCGTTATTATTTTCGAAAAACAAATTGAAATTTCTGAACGAAAAACACACAAATATTTACTCAAGAGGGGAGGGAGAGAGACACATTTTTTACTTTTTTTGAGCTTTTTTTTTAATGGCAGAGGAGGTCTGAAAATAGGCAAAAATAAGCGAMAATGAACCGAAATAGATAAACATAGAGCAAAAATGGGTCAAAATAGCTTCGAAATGAGCGACAAAAAGCTGAAAATTGACCAAAAACTAGCAGAACCGAGGCTAAAATCGACTGAAAAATATGCCAGAATATACCAAATAAATGCTGAAAATTGACTAAAAATAGATCAGGATTGAGTTGCAGAAGGCAAAAAAAAACGCTGAAAAGAGGGCTGAAATTTTGCCGAAAATAGGTCTAAAATGAGATAAAATGGGTCAAAAAGGACTGAAAATTTATTAAAAATAGGTCGAAAATGAGCAAAAACGGGCTGAAATAGAGCTAAAAAGATTCGAAAATAGATCAAATTTGGCCCAAAATAGATCAAAAATGAGCAAAAATGGGCTAAAATAACGCCAAAATAGGTCAAAATTGTCAAAAATGAGCTAAAATGGGTCAAAAATGAGCAAAAAACGAGCTAAAATAGAGCTTAAAAGATCGAAAATAGGTCAAAATTAAGCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGGAGAGAGACACATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTAGCCCCAGAAATTCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>877</pcr_amplicon_size>
		<canonical_amplicon>GAGGGAGAGAGACACATTTTTTACTTTTTTTGAGCTTTTTTTTTAATGGCAGAGGAGGTCTGAAAATAGGCAAAAATAAGCGAAAATGAACCGAAATAGATAAA</canonical_amplicon>
		<polymorphic_amplicon>GAGGGAGAGAGACACATTTTTTACTTTTTTTGAGCTTTTTTTTTAATGGCAGAGGAGGTCTGAAAATAGGCAAAAATAAGCGAMAATGAACCGAAATAGATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27911</snp_id>
        <super_contig>c003400673.Contig1</super_contig>
        <contig_pos>31883</contig_pos>
        <strand></strand>
        <context>gcaaaaatgg[G/A]tcaaaatagc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAAAAATAAGCGAAAATGAACCGAAATAGATAAACATAGAGCAAAAATGG</left_flank>
        <right_flank>TCAAAATAGCTTCGAAATGAGCGACAAAAAGCTGAAAATTGACCAAAAAC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACCCTAAAAACCATCATTCTGGACCCAAAAATCCAAATTTTCAGGCGATGCGCGACTTCCAGCAAATGTTCCCAAACGTTTGCGCCGCGCAAATCGAGTACGTCCTTCGGAAATACGACGGAGACGTGTCGGCGACGATCAACGAGCTACTCTACGATAATGGCAACGATGGTGTGAGGGTTCTAATTTTTTGAAAATTCTCATTTCCGAACTGAAAAACAGCTAAAATCACGCTTTTTGAGGCTAAAAAAAGCTGAAAATGTCTCTAAAACCCTCATTTTTTGGGCTCTAAAGGGGGGGGGGGGGAATTCGTTATTATTTTCGAAAAACAAATTGAAATTTCTGAACGAAAAACACACAAATATTTACTCAAGAGGGGAGGGAGAGAGACACATTTTTTACTTTTTTTGAGCTTTTTTTTTAATGGCAGAGGAGGTCTGAAAATAGGCAAAAATAAGCGAAAATGAACCGAAATAGATAAACATAGAGCAAAAATGGGTCAAAATAGCTTCGAAATGAGCGACAAAAAGCTGAAAATTGACCAAAAACTAGCAGAACCGAGGCTAAAATCGACTGAAAAATATGCCAGAATATACCAAATAAATGCTGAAAATTGACTAAAAATAGATCAGGATTGAGTTGCAGAAGGCAAAAAAAAACGCTGAAAAGAGGGCTGAAATTTTGCCGAAAATAGGTCTAAAATGAGATAAAATGGGTCAAAAAGGACTGAAAATTTATTAAAAATAGGTCGAAAATGAGCAAAAACGGGCTGAAATAGAGCTAAAAAGATTCGAAAATAGATCAAATTTGGCCCAAAATAGATCAAAAATGAGCAAAAATGGGCTAAAATAACGCCAAAATAGGTCAAAATTGTCAAAAATGAGCTAAAATGGGTCAAAAATGAGCAAAAAACGAGCTAAAATAGAGCTTAAAAGATCGAAAATAGGTCAAAATTAAGCTAAAAAAGGTTAAAAAAAAGATTGAAAATAGATTAAATTT</canonical>
            <polymorphic>TACCCTAAAAACCATCATTCTGGACCCAAAAATCCAAATTTTCAGGCGATGCGCGACTTCCAGCAAATGTTCCCAAACGTTTGCGCCGCGCAAATCGAGTACGTCCTTCGGAAATACGACGGAGACGTGTCGGCGACGATCAACGAGCTACTCTACGATAATGGCAACGATGGTGTGAGGGTTCTAATTTTTTGAAAATTCTCATTTCCGAACTGAAAAACAGCTAAAATCACGCTTTTTGAGGCTAAAAAAAGCTGAAAATGTCTCTAAAACCCTCATTTTTTGGGCTCTAAAGGGGGGGGGGGGGAATTCGTTATTATTTTCGAAAAACAAATTGAAATTTCTGAACGAAAAACACACAAATATTTACTCAAGAGGGGAGGGAGAGAGACACATTTTTTACTTTTTTTGAGCTTTTTTTTTAATGGCAGAGGAGGTCTGAAAATAGGCAAAAATAAGCGAAAATGAACCGAAATAGATAAACATAGAGCAAAAATGGRTCAAAATAGCTTCGAAATGAGCGACAAAAAGCTGAAAATTGACCAAAAACTAGCAGAACCGAGGCTAAAATCGACTGAAAAATATGCCAGAATATACCAAATAAATGCTGAAAATTGACTAAAAATAGATCAGGATTGAGTTGCAGAAGGCAAAAAAAAACGCTGAAAAGAGGGCTGAAATTTTGCCGAAAATAGGTCTAAAATGAGATAAAATGGGTCAAAAAGGACTGAAAATTTATTAAAAATAGGTCGAAAATGAGCAAAAACGGGCTGAAATAGAGCTAAAAAGATTCGAAAATAGATCAAATTTGGCCCAAAATAGATCAAAAATGAGCAAAAATGGGCTAAAATAACGCCAAAATAGGTCAAAATTGTCAAAAATGAGCTAAAATGGGTCAAAAATGAGCAAAAAACGAGCTAAAATAGAGCTTAAAAGATCGAAAATAGGTCAAAATTAAGCTAAAAAAGGTTAAAAAAAAGATTGAAAATAGATTAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGGAGAGAGACACATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTAGCCCCAGAAATTCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>877</pcr_amplicon_size>
		<canonical_amplicon>GAGGGAGAGAGACACATTTTTTACTTTTTTTGAGCTTTTTTTTTAATGGCAGAGGAGGTCTGAAAATAGGCAAAAATAAGCGAAAATGAACCGAAATAGATAAACATAGAGCAAAAATGGGTCAAAATAGCTTCGAAATGA</canonical_amplicon>
		<polymorphic_amplicon>GAGGGAGAGAGACACATTTTTTACTTTTTTTGAGCTTTTTTTTTAATGGCAGAGGAGGTCTGAAAATAGGCAAAAATAAGCGAAAATGAACCGAAATAGATAAACATAGAGCAAAAATGGRTCAAAATAGCTTCGAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27912</snp_id>
        <super_contig>c003400673.Contig1</super_contig>
        <contig_pos>32015</contig_pos>
        <strand></strand>
        <context>aaaatagatc[A/T]ggattgagtt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATATGCCAGAATATACCAAATAAATGCTGAAAATTGACTAAAAATAGATC</left_flank>
        <right_flank>GGATTGAGTTGCAGAAGGCAAAAAAAAACGCTGAAAAGAGGGCTGAAATT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGACGATCAACGAGCTACTCTACGATAATGGCAACGATGGTGTGAGGGTTCTAATTTTTTGAAAATTCTCATTTCCGAACTGAAAAACAGCTAAAATCACGCTTTTTGAGGCTAAAAAAAGCTGAAAATGTCTCTAAAACCCTCATTTTTTGGGCTCTAAAGGGGGGGGGGGGGAATTCGTTATTATTTTCGAAAAACAAATTGAAATTTCTGAACGAAAAACACACAAATATTTACTCAAGAGGGGAGGGAGAGAGACACATTTTTTACTTTTTTTGAGCTTTTTTTTTAATGGCAGAGGAGGTCTGAAAATAGGCAAAAATAAGCGAAAATGAACCGAAATAGATAAACATAGAGCAAAAATGGGTCAAAATAGCTTCGAAATGAGCGACAAAAAGCTGAAAATTGACCAAAAACTAGCAGAACCGAGGCTAAAATCGACTGAAAAATATGCCAGAATATACCAAATAAATGCTGAAAATTGACTAAAAATAGATCAGGATTGAGTTGCAGAAGGCAAAAAAAAACGCTGAAAAGAGGGCTGAAATTTTGCCGAAAATAGGTCTAAAATGAGATAAAATGGGTCAAAAAGGACTGAAAATTTATTAAAAATAGGTCGAAAATGAGCAAAAACGGGCTGAAATAGAGCTAAAAAGATTCGAAAATAGATCAAATTTGGCCCAAAATAGATCAAAAATGAGCAAAAATGGGCTAAAATAACGCCAAAATAGGTCAAAATTGTCAAAAATGAGCTAAAATGGGTCAAAAATGAGCAAAAAACGAGCTAAAATAGAGCTTAAAAGATCGAAAATAGGTCAAAATTAAGCTAAAAAAGGTTAAAAAAAAGATTGAAAATAGATTAAATTTGGGCCAAAATAGGTCTAAAATGATCTTTAAAAAACTGAAAATTGACTGAAAAATGCTGGAAACGAGCTTAAAGGAGTCAAAAATATGCTAAAGACATCAAAACGAGCTAAAAAAGGCTGAAAATGGGATGAA</canonical>
            <polymorphic>GCGACGATCAACGAGCTACTCTACGATAATGGCAACGATGGTGTGAGGGTTCTAATTTTTTGAAAATTCTCATTTCCGAACTGAAAAACAGCTAAAATCACGCTTTTTGAGGCTAAAAAAAGCTGAAAATGTCTCTAAAACCCTCATTTTTTGGGCTCTAAAGGGGGGGGGGGGGAATTCGTTATTATTTTCGAAAAACAAATTGAAATTTCTGAACGAAAAACACACAAATATTTACTCAAGAGGGGAGGGAGAGAGACACATTTTTTACTTTTTTTGAGCTTTTTTTTTAATGGCAGAGGAGGTCTGAAAATAGGCAAAAATAAGCGAAAATGAACCGAAATAGATAAACATAGAGCAAAAATGGGTCAAAATAGCTTCGAAATGAGCGACAAAAAGCTGAAAATTGACCAAAAACTAGCAGAACCGAGGCTAAAATCGACTGAAAAATATGCCAGAATATACCAAATAAATGCTGAAAATTGACTAAAAATAGATCWGGATTGAGTTGCAGAAGGCAAAAAAAAACGCTGAAAAGAGGGCTGAAATTTTGCCGAAAATAGGTCTAAAATGAGATAAAATGGGTCAAAAAGGACTGAAAATTTATTAAAAATAGGTCGAAAATGAGCAAAAACGGGCTGAAATAGAGCTAAAAAGATTCGAAAATAGATCAAATTTGGCCCAAAATAGATCAAAAATGAGCAAAAATGGGCTAAAATAACGCCAAAATAGGTCAAAATTGTCAAAAATGAGCTAAAATGGGTCAAAAATGAGCAAAAAACGAGCTAAAATAGAGCTTAAAAGATCGAAAATAGGTCAAAATTAAGCTAAAAAAGGTTAAAAAAAAGATTGAAAATAGATTAAATTTGGGCCAAAATAGGTCTAAAATGATCTTTAAAAAACTGAAAATTGACTGAAAAATGCTGGAAACGAGCTTAAAGGAGTCAAAAATATGCTAAAGACATCAAAACGAGCTAAAAAAGGCTGAAAATGGGATGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGGAGAGAGACACATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTAGCCCCAGAAATTCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>877</pcr_amplicon_size>
		<canonical_amplicon>GAGGGAGAGAGACACATTTTTTACTTTTTTTGAGCTTTTTTTTTAATGGCAGAGGAGGTCTGAAAATAGGCAAAAATAAGCGAAAATGAACCGAAATAGATAAACATAGAGCAAAAATGGGTCAAAATAGCTTCGAAATGAGCGACAAAAAGCTGAAAATTGACCAAAAACTAGCAGAACCGAGGCTAAAATCGACTGAAAAATATGCCAGAATATACCAAATAAATGCTGAAAATTGACTAAAAATAGATCAGGATTGAGTTGCAGAAGGCA</canonical_amplicon>
		<polymorphic_amplicon>GAGGGAGAGAGACACATTTTTTACTTTTTTTGAGCTTTTTTTTTAATGGCAGAGGAGGTCTGAAAATAGGCAAAAATAAGCGAAAATGAACCGAAATAGATAAACATAGAGCAAAAATGGGTCAAAATAGCTTCGAAATGAGCGACAAAAAGCTGAAAATTGACCAAAAACTAGCAGAACCGAGGCTAAAATCGACTGAAAAATATGCCAGAATATACCAAATAAATGCTGAAAATTGACTAAAAATAGATCWGGATTGAGTTGCAGAAGGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27913</snp_id>
        <super_contig>c003400673.Contig1</super_contig>
        <contig_pos>75216</contig_pos>
        <strand></strand>
        <context>aagatgtaaa[T/C]tacagaaatg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTAAAGGTGCATATCACAAAAACTAAAAAAGCTACAGAAAAGATGTAAA</left_flank>
        <right_flank>TACAGAAATGTTAGAAATTTTATGAGCTATATTTTTGTAGTTGATAACTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAAAAATGACAGGAAATGAGAAAAAATAATAAAAAAGAAGTCTATAAACCGGAATCTATGGGGATATCAATTTCTCTTTTATTCTCTCTCCTCATTGCTCATATAAACAATTTCCCGCACATTTTTCTATGAAATTCGGGAAATATAATTTTCTTAAAATGTTAGGAAAGTTTATAAATCAACCGAGAAGTTTGTTATCCTTGAGAAAATCGGGGTACTGTAACTGAATTTTCAATTTTCTGTATATAGATTTTCAAATTGATGTATCCCAAAAACTAAAAGTTTTATAAAGTTTTTGTTAACTATAAAAATGTAGCTCATAAAATTTCTACAATTTGTTAGTAGAACACTTTTGTCTTGCTATCTTAGTTTTAGAGCTATGCGCCTTTAAAGTACGCGCCCTGATGGAGAGACGTCTCCTTTCTCTGCTTCTAAACGCGCGCCAACTTTAAAGGTGCATATCACAAAAACTAAAAAAGCTACAGAAAAGATGTAAATTACAGAAATGTTAGAAATTTTATGAGCTATATTTTTGTAGTTGATAACTTTTTAATAGCGTTTTTGGTTTTTGAAATATGCGCCTTTAAAGAGACACAGAGAAGTCAGTGTGTCTCCTTCCTCTGCGTCTCCGCGCACGCCAACTTTAAAGGCGCATAGCTCAAAAACTAAAAATGCTAGAAAAAAGTTTTCAACTATAAAAATGTAGGTTATAACATTTTCTACATTGCTTGGTTGGCCAAATTTAATTCGCTAAAAAATTGCAAAAGTTACAGGTGTTACAAAAAGTTAAGCCAAAAAAAAAAACAAGATAGTCCTAGAAAAATCGCCATATCTCAAAAACTAAAAACGTCCCAAAATTTTTATAAAGTACACAACTGTAGCTCGTCAAATTTTCTACAAAATAAAATAGATTTTCAAGCTCTAGCTTTTTCACCATCCAAGATATAGTGCTCCAAAACAAAATGCTCATTAGAACGGGTACCCCCTGGAGATGGGGG</canonical>
            <polymorphic>TGGAAAAATGACAGGAAATGAGAAAAAATAATAAAAAAGAAGTCTATAAACCGGAATCTATGGGGATATCAATTTCTCTTTTATTCTCTCTCCTCATTGCTCATATAAACAATTTCCCGCACATTTTTCTATGAAATTCGGGAAATATAATTTTCTTAAAATGTTAGGAAAGTTTATAAATCAACCGAGAAGTTTGTTATCCTTGAGAAAATCGGGGTACTGTAACTGAATTTTCAATTTTCTGTATATAGATTTTCAAATTGATGTATCCCAAAAACTAAAAGTTTTATAAAGTTTTTGTTAACTATAAAAATGTAGCTCATAAAATTTCTACAATTTGTTAGTAGAACACTTTTGTCTTGCTATCTTAGTTTTAGAGCTATGCGCCTTTAAAGTACGCGCCCTGATGGAGAGACGTCTCCTTTCTCTGCTTCTAAACGCGCGCCAACTTTAAAGGTGCATATCACAAAAACTAAAAAAGCTACAGAAAAGATGTAAAYTACAGAAATGTTAGAAATTTTATGAGCTATATTTTTGTAGTTGATAACTTTTTAATAGCGTTTTTGGTTTTTGAAATATGCGCCTTTAAAGAGACACAGAGAAGTCAGTGTGTCTCCTTCCTCTGCGTCTCCGCGCACGCCAACTTTAAAGGCGCATAGCTCAAAAACTAAAAATGCTAGAAAAAAGTTTTCAACTATAAAAATGTAGGTTATAACATTTTCTACATTGCTTGGTTGGCCAAATTTAATTCGCTAAAAAATTGCAAAAGTTACAGGTGTTACAAAAAGTTAAGCCAAAAAAAAAAACAAGATAGTCCTAGAAAAATCGCCATATCTCAAAAACTAAAAACGTCCCAAAATTTTTATAAAGTACACAACTGTAGCTCGTCAAATTTTCTACAAAATAAAATAGATTTTCAAGCTCTAGCTTTTTCACCATCCAAGATATAGTGCTCCAAAACAAAATGCTCATTAGAACGGGTACCCCCTGGAGATGGGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>226 163 110 99 80 70 67 40 33 24 23 18 14 12 9 7 5</canonical_bands>
                <polymorphic_bands>226 181 110 99 80 70 67 40 33 24 23 14 12 9 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTGTAACTGAATTTTCAATTTTCT</pcr_primer_p1>
		<pcr_primer_p2>ACACCTGTAACTTTTGCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>561</pcr_amplicon_size>
		<canonical_amplicon>ACTGTAACTGAATTTTCAATTTTCTGTATATAGATTTTCAAATTGATGTATCCCAAAAACTAAAAGTTTTATAAAGTTTTTGTTAACTATAAAAATGTAGCTCATAAAATTTCTACAATTTGTTAGTAGAACACTTTTGTCTTGCTATCTTAGTTTTAGAGCTATGCGCCTTTAAAGTACGCGCCCTGATGGAGAGACGTCTCCTTTCTCTGCTTCTAAACGCGCGCCAACTTTAAAGGTGCATATCACAAAAACTAAAAAAGCTACAGAAAAGATGTAAATTACAGAAATGTTAGAAATTTTATGAGCTATATTTTTGTAGTTGATAACTTTTTAATAGCGTTTTTGGTTTTTGAAATATGCGCCTTTAAAGAGACACAGAGAAGTCAGTGTGTCTCCTTCCTCTGCGTCTCCGCGCACGCCAACTTTAAAGGCGCATAGCTCAAAAACTAAAAATGCTAGAAAAAAGTTTTCAACTATAAAAATGTAGGTTATAACATTTTCTACATTGCTTGGTTGGCCAAATTTAATTCGCTAAAAAATTGCAAAAGTTACAGGTGT</canonical_amplicon>
		<polymorphic_amplicon>ACTGTAACTGAATTTTCAATTTTCTGTATATAGATTTTCAAATTGATGTATCCCAAAAACTAAAAGTTTTATAAAGTTTTTGTTAACTATAAAAATGTAGCTCATAAAATTTCTACAATTTGTTAGTAGAACACTTTTGTCTTGCTATCTTAGTTTTAGAGCTATGCGCCTTTAAAGTACGCGCCCTGATGGAGAGACGTCTCCTTTCTCTGCTTCTAAACGCGCGCCAACTTTAAAGGTGCATATCACAAAAACTAAAAAAGCTACAGAAAAGATGTAAAYTACAGAAATGTTAGAAATTTTATGAGCTATATTTTTGTAGTTGATAACTTTTTAATAGCGTTTTTGGTTTTTGAAATATGCGCCTTTAAAGAGACACAGAGAAGTCAGTGTGTCTCCTTCCTCTGCGTCTCCGCGCACGCCAACTTTAAAGGCGCATAGCTCAAAAACTAAAAATGCTAGAAAAAAGTTTTCAACTATAAAAATGTAGGTTATAACATTTTCTACATTGCTTGGTTGGCCAAATTTAATTCGCTAAAAAATTGCAAAAGTTACAGGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27914</snp_id>
        <super_contig>c003400673.Contig1</super_contig>
        <contig_pos>81181</contig_pos>
        <strand></strand>
        <context>TTTAATTAGT[G/T]TTCTTATATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCTCCTTCCTTTATTTATTTTTGTTTTTTTGTATTCATTTTTAATTAGT</left_flank>
        <right_flank>TTCTTATATTTGATATTATTTAAAATTTCCAGACAGAGAGACGCAGAGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTACACATTTTTGTAGTTAACAACACTCTTTTAGCTTTTTCAGTTTTTGAGATAAGCGCATTCAATGTTTTTTTTCAGAAATTCACTGCTTTCATTCGTCTCGCTAACCCAGAATTCCGACGTGATGTTTTCTTCTTTCCGATTCCAACAGAATACGCTGCAAGAAATGAGAATCAGAACCTTCCAGAAGAATTTCTAGAAAAAATTCCAGAAGACGTCGATGTACAAGTTCAGAAAATTTGGAGAATCTGGAGAACATTCAGGAGGATTTTGGAAATTTCCAGAACAACGAGAACCCTGCTGAAAATTCTGGAATGAACGAATTCAAGAAATATGATGATTAATTTTAAATTTTCTAGTCACAATCTGAAGTTGTTCAATACTAAAAAAAAAATTTTTTCGGATTTTTTAAAAATTTCCCTCATTGTAAACTTTAAATTTCCCAGAACTTCTCCTTCCTTTATTTATTTTTGTTTTTTTGTATTCATTTTTAATTAGTGTTCTTATATTTGATATTATTTAAAATTTCCAGACAGAGAGACGCAGAGAAGTCAGACTCGCCGCTTTCTTTGCGTCTCTTCCCCTCTCTCCTCTTTCCTTGCGCTTGCCTCGGCGCGCGGCAACTTTAAAGGCGCATAACTCAAAAACTAAAACAGCTACAAAAAAGTTGTGAACTACAAAAAGATGGGCAATTTTATGAGCTATATGTTGATAATAAATATATTTTGAATATCTGTAAAATTAGCAAAGATACAAGCGTTTGAAAAGAATGGCCTCTTCTGAAATCGGCTTGACCTTTCTCCAAGAGACCGTATCTCTGCTGGTTTTATAGCTCTCTATATTTTGTAAACTACAAAAACGTAGCTCTTAAAACTTTACATATTTTGTCAGTTTAACACTACTTTGTAGCTGTTTTAGTTATTGAGATATGCTTCTTTAAAGTTGCGGAGACACAGAGAAAGGTAGACACCACCACTTCTCTGCGGTTCCACCCACTTTA</canonical>
            <polymorphic>CTACACATTTTTGTAGTTAACAACACTCTTTTAGCTTTTTCAGTTTTTGAGATAAGCGCATTCAATGTTTTTTTTCAGAAATTCACTGCTTTCATTCGTCTCGCTAACCCAGAATTCCGACGTGATGTTTTCTTCTTTCCGATTCCAACAGAATACGCTGCAAGAAATGAGAATCAGAACCTTCCAGAAGAATTTCTAGAAAAAATTCCAGAAGACGTCGATGTACAAGTTCAGAAAATTTGGAGAATCTGGAGAACATTCAGGAGGATTTTGGAAATTTCCAGAACAACGAGAACCCTGCTGAAAATTCTGGAATGAACGAATTCAAGAAATATGATGATTAATTTTAAATTTTCTAGTCACAATCTGAAGTTGTTCAATACTAAAAAAAAAATTTTTTCGGATTTTTTAAAAATTTCCCTCATTGTAAACTTTAAATTTCCCAGAACTTCTCCTTCCTTTATTTATTTTTGTTTTTTTGTATTCATTTTTAATTAGTKTTCTTATATTTGATATTATTTAAAATTTCCAGACAGAGAGACGCAGAGAAGTCAGACTCGCCGCTTTCTTTGCGTCTCTTCCCCTCTCTCCTCTTTCCTTGCGCTTGCCTCGGCGCGCGGCAACTTTAAAGGCGCATAACTCAAAAACTAAAACAGCTACAAAAAAGTTGTGAACTACAAAAAGATGGGCAATTTTATGAGCTATATGTTGATAATAAATATATTTTGAATATCTGTAAAATTAGCAAAGATACAAGCGTTTGAAAAGAATGGCCTCTTCTGAAATCGGCTTGACCTTTCTCCAAGAGACCGTATCTCTGCTGGTTTTATAGCTCTCTATATTTTGTAAACTACAAAAACGTAGCTCTTAAAACTTTACATATTTTGTCAGTTTAACACTACTTTGTAGCTGTTTTAGTTATTGAGATATGCTTCTTTAAAGTTGCGGAGACACAGAGAAAGGTAGACACCACCACTTCTCTGCGGTTCCACCCACTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>238 226 172 138 60 55 39 20 16 16 5 5 4 3 3</canonical_bands>
                <polymorphic_bands>310 238 226 60 55 39 20 16 16 5 5 4 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAACTTCTCCTTCCTTTATTT</pcr_primer_p1>
		<pcr_primer_p2>CTTTGCTAATTTTACAGATATTCAA</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>CAGAACTTCTCCTTCCTTTATTTATTTTTGTTTTTTTGTATTCATTTTTAATTAGTGTTCTTATATTTGATATTATTTAAAATTTCCAGACAGAGAGACGCAGAGAAGTCAGACTCGCCGCTTTCTTTGCGTCTCTTCCCCTCTCTCCTCTTTCCTTGCGCTTGCCTCGGCGCGCGGCAACTTTAAAGGCGCATAACTCAAAAACTAAAACAGCTACAAAAAAGTTGTGAACTACAAAAAGATGGGCAATTTTATGAGCTATATGTTGATAATAAATATATTTTGAATATCTGTAAAATTAGCAAAG</canonical_amplicon>
		<polymorphic_amplicon>CAGAACTTCTCCTTCCTTTATTTATTTTTGTTTTTTTGTATTCATTTTTAATTAGTKTTCTTATATTTGATATTATTTAAAATTTCCAGACAGAGAGACGCAGAGAAGTCAGACTCGCCGCTTTCTTTGCGTCTCTTCCCCTCTCTCCTCTTTCCTTGCGCTTGCCTCGGCGCGCGGCAACTTTAAAGGCGCATAACTCAAAAACTAAAACAGCTACAAAAAAGTTGTGAACTACAAAAAGATGGGCAATTTTATGAGCTATATGTTGATAATAAATATATTTTGAATATCTGTAAAATTAGCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27915</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>4631</contig_pos>
        <strand></strand>
        <context>CATGAGTGTT[A/G]tgagtttctg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGGGTCAAGGATTATGAATTGAAAGAATTTGTTAAGCGTCATGAGTGTT</left_flank>
        <right_flank>TGAGTTTCTGAAGGAGTTTTTGACTTTTTTGGCTATATTTAAATGTTATC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCATCAAAATCACTTTCAGTACATTCTTCCACCAACGCAAACTCTCAAATCTCTGTAGTTCGTTTCCCAATCTTCGAATCTTGGATATTTCTTTTGCGAGAGGTCTAACAACTATGGAAGGAATCAAAAATCTCAAACACCTGCAAAAATTGGTGATGCGGGGGATAGAACTCGAAGACATTTATGGATACAAAGAGTTGTCCGATTTGAAGAATTTAAGGGTTTTAGATGTTTCGGATTGTGACGAGTGAGTTTATTAGTTTCGAGAATTAGAGAGAGGGGGAGGCCATTTTTTTTCCAAATCCTAACTTGCTATATCCCGGACCGGTCCGGGTATGCCCAAAACGAAAAACTGTACTATTTTCAGTGATTCCTATCGAGTGATTAGAAGTCTATTGACTTCTGATGTCCGAATGAAAAATTTGGTGTTTCTGGATTGTTCAATGACATGGGTCAAGGATTATGAATTGAAAGAATTTGTTAAGCGTCATGAGTGTTATGAGTTTCTGAAGGAGTTTTTGACTTTTTTGGCTATATTTAAATGTTATCCGTATTTTGCATGCTTTTCTACAATCTGAAGAGGTTTTCTCTTTTTTTTTCGGAAAATTTTTTTTGAGAAAATCGCCTTGGGGTACCCCCTTGGAATTTTTTCAATTTTCGAAAAAAACAATTTAATGTGCTAGAATTAGTTCAAAACAAAGAGAATCAATAAAAATGTTGTTTCACTAGATTCGATAACCTATGTTCATTTCTACAAGTCAGATACAGCCACCGGAAAGAACGAAGAAAAAATTCAAAAAAGTTTAGCAGCTCGAGGGAGTTGAACCAGAGAATACCCGCTTCATATTCTTAATCACTAACCATTCGACCACGCTTCCACATTCTTTCAACGCTTTAAAATTTAACTACGCGAGGAAGAAAAATGAGATTGAAAATCCACGTCATTTTTGGAAACTTTCGACCCAGTTTTCTCGAAAACTACCGCGACAAAGCACATTT</canonical>
            <polymorphic>AGCATCAAAATCACTTTCAGTACATTCTTCCACCAACGCAAACTCTCAAATCTCTGTAGTTCGTTTCCCAATCTTCGAATCTTGGATATTTCTTTTGCGAGAGGTCTAACAACTATGGAAGGAATCAAAAATCTCAAACACCTGCAAAAATTGGTGATGCGGGGGATAGAACTCGAAGACATTTATGGATACAAAGAGTTGTCCGATTTGAAGAATTTAAGGGTTTTAGATGTTTCGGATTGTGACGAGTGAGTTTATTAGTTTCGAGAATTAGAGAGAGGGGGAGGCCATTTTTTTTCCAAATCCTAACTTGCTATATCCCGGACCGGTCCGGGTATGCCCAAAACGAAAAACTGTACTATTTTCAGTGATTCCTATCGAGTGATTAGAAGTCTATTGACTTCTGATGTCCGAATGAAAAATTTGGTGTTTCTGGATTGTTCAATGACATGGGTCAAGGATTATGAATTGAAAGAATTTGTTAAGCGTCATGAGTGTTRTGAGTTTCTGAAGGAGTTTTTGACTTTTTTGGCTATATTTAAATGTTATCCGTATTTTGCATGCTTTTCTACAATCTGAAGAGGTTTTCTCTTTTTTTTTCGGAAAATTTTTTTTGAGAAAATCGCCTTGGGGTACCCCCTTGGAATTTTTTCAATTTTCGAAAAAAACAATTTAATGTGCTAGAATTAGTTCAAAACAAAGAGAATCAATAAAAATGTTGTTTCACTAGATTCGATAACCTATGTTCATTTCTACAAGTCAGATACAGCCACCGGAAAGAACGAAGAAAAAATTCAAAAAAGTTTAGCAGCTCGAGGGAGTTGAACCAGAGAATACCCGCTTCATATTCTTAATCACTAACCATTCGACCACGCTTCCACATTCTTTCAACGCTTTAAAATTTAACTACGCGAGGAAGAAAAATGAGATTGAAAATCCACGTCATTTTTGGAAACTTTCGACCCAGTTTTCTCGAAAACTACCGCGACAAAGCACATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGGGTCAAGGATTATGAA</pcr_primer_p1>
		<pcr_primer_p2>CTCGAGCTGCTAAACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>369</pcr_amplicon_size>
		<canonical_amplicon>CATGGGTCAAGGATTATGAATTGAAAGAATTTGTTAAGCGTCATGAGTGTTATGAGTTTCTGAAGGAGTTTTTGACTTTTTTGGCTATATTTAAATGTTATCCGTATTTTGCATGCTTTTCTACAATCTGAAGAGGTTTTCTCTTTTTTTTTCGGAAAATTTTTTTTGAGAAAATCGCCTTGGGGTACCCCCTTGGAATTTTTTCAATTTTCGAAAAAAACAATTTAATGTGCTAGAATTAGTTCAAAACAAAGAGAATCAATAAAAATGTTGTTTCACTAGATTCGATAACCTATGTTCATTTCTACAAGTCAGATACAGCCACCGGAAAGAACGAAGAAAAAATTCAAAAAAGTTTAGCAGCTCGAG</canonical_amplicon>
		<polymorphic_amplicon>CATGGGTCAAGGATTATGAATTGAAAGAATTTGTTAAGCGTCATGAGTGTTRTGAGTTTCTGAAGGAGTTTTTGACTTTTTTGGCTATATTTAAATGTTATCCGTATTTTGCATGCTTTTCTACAATCTGAAGAGGTTTTCTCTTTTTTTTTCGGAAAATTTTTTTTGAGAAAATCGCCTTGGGGTACCCCCTTGGAATTTTTTCAATTTTCGAAAAAAACAATTTAATGTGCTAGAATTAGTTCAAAACAAAGAGAATCAATAAAAATGTTGTTTCACTAGATTCGATAACCTATGTTCATTTCTACAAGTCAGATACAGCCACCGGAAAGAACGAAGAAAAAATTCAAAAAAGTTTAGCAGCTCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27916</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>4739</contig_pos>
        <strand></strand>
        <context>tttcggaaaa[T/A]tttttttgag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGCATGCTTTTCTACAATCTGAAGAGGTTTTCTCTTTTTTTTTCGGAAAA</left_flank>
        <right_flank>TTTTTTTGAGAAAATCGCCTTGGGGTACCCCCTTGGAATTTTTTCAATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAACTATGGAAGGAATCAAAAATCTCAAACACCTGCAAAAATTGGTGATGCGGGGGATAGAACTCGAAGACATTTATGGATACAAAGAGTTGTCCGATTTGAAGAATTTAAGGGTTTTAGATGTTTCGGATTGTGACGAGTGAGTTTATTAGTTTCGAGAATTAGAGAGAGGGGGAGGCCATTTTTTTTCCAAATCCTAACTTGCTATATCCCGGACCGGTCCGGGTATGCCCAAAACGAAAAACTGTACTATTTTCAGTGATTCCTATCGAGTGATTAGAAGTCTATTGACTTCTGATGTCCGAATGAAAAATTTGGTGTTTCTGGATTGTTCAATGACATGGGTCAAGGATTATGAATTGAAAGAATTTGTTAAGCGTCATGAGTGTTATGAGTTTCTGAAGGAGTTTTTGACTTTTTTGGCTATATTTAAATGTTATCCGTATTTTGCATGCTTTTCTACAATCTGAAGAGGTTTTCTCTTTTTTTTTCGGAAAATTTTTTTTGAGAAAATCGCCTTGGGGTACCCCCTTGGAATTTTTTCAATTTTCGAAAAAAACAATTTAATGTGCTAGAATTAGTTCAAAACAAAGAGAATCAATAAAAATGTTGTTTCACTAGATTCGATAACCTATGTTCATTTCTACAAGTCAGATACAGCCACCGGAAAGAACGAAGAAAAAATTCAAAAAAGTTTAGCAGCTCGAGGGAGTTGAACCAGAGAATACCCGCTTCATATTCTTAATCACTAACCATTCGACCACGCTTCCACATTCTTTCAACGCTTTAAAATTTAACTACGCGAGGAAGAAAAATGAGATTGAAAATCCACGTCATTTTTGGAAACTTTCGACCCAGTTTTCTCGAAAACTACCGCGACAAAGCACATTTTGAAAACAGATTTGGAATCAGGAAAATGTTAGCTTTCAGATGATATAGGTCATCACCCGTATCGCCACACCCGAGTTGGGGCCTTCCCTAGTTAGAATCTCAGAATTT</canonical>
            <polymorphic>ACAACTATGGAAGGAATCAAAAATCTCAAACACCTGCAAAAATTGGTGATGCGGGGGATAGAACTCGAAGACATTTATGGATACAAAGAGTTGTCCGATTTGAAGAATTTAAGGGTTTTAGATGTTTCGGATTGTGACGAGTGAGTTTATTAGTTTCGAGAATTAGAGAGAGGGGGAGGCCATTTTTTTTCCAAATCCTAACTTGCTATATCCCGGACCGGTCCGGGTATGCCCAAAACGAAAAACTGTACTATTTTCAGTGATTCCTATCGAGTGATTAGAAGTCTATTGACTTCTGATGTCCGAATGAAAAATTTGGTGTTTCTGGATTGTTCAATGACATGGGTCAAGGATTATGAATTGAAAGAATTTGTTAAGCGTCATGAGTGTTATGAGTTTCTGAAGGAGTTTTTGACTTTTTTGGCTATATTTAAATGTTATCCGTATTTTGCATGCTTTTCTACAATCTGAAGAGGTTTTCTCTTTTTTTTTCGGAAAAWTTTTTTTGAGAAAATCGCCTTGGGGTACCCCCTTGGAATTTTTTCAATTTTCGAAAAAAACAATTTAATGTGCTAGAATTAGTTCAAAACAAAGAGAATCAATAAAAATGTTGTTTCACTAGATTCGATAACCTATGTTCATTTCTACAAGTCAGATACAGCCACCGGAAAGAACGAAGAAAAAATTCAAAAAAGTTTAGCAGCTCGAGGGAGTTGAACCAGAGAATACCCGCTTCATATTCTTAATCACTAACCATTCGACCACGCTTCCACATTCTTTCAACGCTTTAAAATTTAACTACGCGAGGAAGAAAAATGAGATTGAAAATCCACGTCATTTTTGGAAACTTTCGACCCAGTTTTCTCGAAAACTACCGCGACAAAGCACATTTTGAAAACAGATTTGGAATCAGGAAAATGTTAGCTTTCAGATGATATAGGTCATCACCCGTATCGCCACACCCGAGTTGGGGCCTTCCCTAGTTAGAATCTCAGAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>207 204 147 130 108 105 55 39 5</canonical_bands>
                <polymorphic_bands>207 204 169 147 108 105 55 5</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>204 152 130 108 107 65 55 46 40 39 16 15 9 9 5</canonical_bands>
                <polymorphic_bands>204 169 152 108 107 65 55 46 40 16 15 9 9 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGTTAAGCGTCATGAGTGT</pcr_primer_p1>
		<pcr_primer_p2>CTCGAGCTGCTAAACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>340</pcr_amplicon_size>
		<canonical_amplicon>TTTGTTAAGCGTCATGAGTGTTATGAGTTTCTGAAGGAGTTTTTGACTTTTTTGGCTATATTTAAATGTTATCCGTATTTTGCATGCTTTTCTACAATCTGAAGAGGTTTTCTCTTTTTTTTTCGGAAAATTTTTTTTGAGAAAATCGCCTTGGGGTACCCCCTTGGAATTTTTTCAATTTTCGAAAAAAACAATTTAATGTGCTAGAATTAGTTCAAAACAAAGAGAATCAATAAAAATGTTGTTTCACTAGATTCGATAACCTATGTTCATTTCTACAAGTCAGATACAGCCACCGGAAAGAACGAAGAAAAAATTCAAAAAAGTTTAGCAGCTCGAG</canonical_amplicon>
		<polymorphic_amplicon>TTTGTTAAGCGTCATGAGTGTTATGAGTTTCTGAAGGAGTTTTTGACTTTTTTGGCTATATTTAAATGTTATCCGTATTTTGCATGCTTTTCTACAATCTGAAGAGGTTTTCTCTTTTTTTTTCGGAAAAWTTTTTTTGAGAAAATCGCCTTGGGGTACCCCCTTGGAATTTTTTCAATTTTCGAAAAAAACAATTTAATGTGCTAGAATTAGTTCAAAACAAAGAGAATCAATAAAAATGTTGTTTCACTAGATTCGATAACCTATGTTCATTTCTACAAGTCAGATACAGCCACCGGAAAGAACGAAGAAAAAATTCAAAAAAGTTTAGCAGCTCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27917</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>5043</contig_pos>
        <strand>+</strand>
        <context>TTTAACTACG[C/T]GAGGAAGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCATTCGACCACGCTTCCACATTCTTTCAACGCTTTAAAATTTAACTACG</left_flank>
        <right_flank>GAGGAAGAAAAATGAGATTGAAAATCCACGTCATTTTTGGAAACTTTCGA</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATGAAAAATTTGGTGTTTCTGGATTGTTCAATGACATGGGTCAAGGATTATGAATTGAAAGAATTTGTTAAGCGTCATGAGTGTTATGAGTTTCTGAAGGAGTTTTTGACTTTTTTGGCTATATTTAAATGTTATCCGTATTTTGCATGCTTTTCTACAATCTGAAGAGGTTTTCTCTTTTTTTTTCGGAAAATTTTTTTTGAGAAAATCGCCTTGGGGTACCCCCTTGGAATTTTTTCAATTTTCGAAAAAAACAATTTAATGTGCTAGAATTAGTTCAAAACAAAGAGAATCAATAAAAATGTTGTTTCACTAGATTCGATAACCTATGTTCATTTCTACAAGTCAGATACAGCCACCGGAAAGAACGAAGAAAAAATTCAAAAAAGTTTAGCAGCTCGAGGGAGTTGAACCAGAGAATACCCGCTTCATATTCTTAATCACTAACCATTCGACCACGCTTCCACATTCTTTCAACGCTTTAAAATTTAACTACGCGAGGAAGAAAAATGAGATTGAAAATCCACGTCATTTTTGGAAACTTTCGACCCAGTTTTCTCGAAAACTACCGCGACAAAGCACATTTTGAAAACAGATTTGGAATCAGGAAAATGTTAGCTTTCAGATGATATAGGTCATCACCCGTATCGCCACACCCGAGTTGGGGCCTTCCCTAGTTAGAATCTCAGAATTTCAGAACTTCAGAATTTTCGAGTTTTAGAATTTTAATTTTGGAACTTTTGAAATTCAGAGCTTTCGAATTTTCGAATTCTCAAATTTTTTCAAATCCTCAAAATTTGAAATTTTCCGAATTTTCGAATTTGAGAGCCCGTTGTCCATCCATTTCCCATTGTCCAACATCTGTCCGAGTGGGTTCTCGGAGCATCTTAAGACCTCCCTGTGTGTAATTTAGAGAGTGCACTAATTGAAGAGACGATAAGAAGCAGAAAAACAAGTCGTCTCTCCTCGTTGCTCCCCACACAAAAATAGAACTCTCT</canonical>
            <polymorphic>GAATGAAAAATTTGGTGTTTCTGGATTGTTCAATGACATGGGTCAAGGATTATGAATTGAAAGAATTTGTTAAGCGTCATGAGTGTTATGAGTTTCTGAAGGAGTTTTTGACTTTTTTGGCTATATTTAAATGTTATCCGTATTTTGCATGCTTTTCTACAATCTGAAGAGGTTTTCTCTTTTTTTTTCGGAAAATTTTTTTTGAGAAAATCGCCTTGGGGTACCCCCTTGGAATTTTTTCAATTTTCGAAAAAAACAATTTAATGTGCTAGAATTAGTTCAAAACAAAGAGAATCAATAAAAATGTTGTTTCACTAGATTCGATAACCTATGTTCATTTCTACAAGTCAGATACAGCCACCGGAAAGAACGAAGAAAAAATTCAAAAAAGTTTAGCAGCTCGAGGGAGTTGAACCAGAGAATACCCGCTTCATATTCTTAATCACTAACCATTCGACCACGCTTCCACATTCTTTCAACGCTTTAAAATTTAACTACGYGAGGAAGAAAAATGAGATTGAAAATCCACGTCATTTTTGGAAACTTTCGACCCAGTTTTCTCGAAAACTACCGCGACAAAGCACATTTTGAAAACAGATTTGGAATCAGGAAAATGTTAGCTTTCAGATGATATAGGTCATCACCCGTATCGCCACACCCGAGTTGGGGCCTTCCCTAGTTAGAATCTCAGAATTTCAGAACTTCAGAATTTTCGAGTTTTAGAATTTTAATTTTGGAACTTTTGAAATTCAGAGCTTTCGAATTTTCGAATTCTCAAATTTTTTCAAATCCTCAAAATTTGAAATTTTCCGAATTTTCGAATTTGAGAGCCCGTTGTCCATCCATTTCCCATTGTCCAACATCTGTCCGAGTGGGTTCTCGGAGCATCTTAAGACCTCCCTGTGTGTAATTTAGAGAGTGCACTAATTGAAGAGACGATAAGAAGCAGAAAAACAAGTCGTCTCTCCTCGTTGCTCCCCACACAAAAATAGAACTCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 427 74</canonical_bands>
                <polymorphic_bands>573 427</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATCACTAACCATTCGACCA</pcr_primer_p1>
		<pcr_primer_p2>GTCTTAAGATGCTCCGAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>457</pcr_amplicon_size>
		<canonical_amplicon>TAATCACTAACCATTCGACCACGCTTCCACATTCTTTCAACGCTTTAAAATTTAACTACGCGAGGAAGAAAAATGAGATTGAAAATCCACGTCATTTTTGGAAACTTTCGACCCAGTTTTCTCGAAAACTACCGCGACAAAGCACATTTTGAAAACAGATTTGGAATCAGGAAAATGTTAGCTTTCAGATGATATAGGTCATCACCCGTATCGCCACACCCGAGTTGGGGCCTTCCCTAGTTAGAATCTCAGAATTTCAGAACTTCAGAATTTTCGAGTTTTAGAATTTTAATTTTGGAACTTTTGAAATTCAGAGCTTTCGAATTTTCGAATTCTCAAATTTTTTCAAATCCTCAAAATTTGAAATTTTCCGAATTTTCGAATTTGAGAGCCCGTTGTCCATCCATTTCCCATTGTCCAACATCTGTCCGAGTGGGTTCTCGGAGCATCTTAAGAC</canonical_amplicon>
		<polymorphic_amplicon>TAATCACTAACCATTCGACCACGCTTCCACATTCTTTCAACGCTTTAAAATTTAACTACGYGAGGAAGAAAAATGAGATTGAAAATCCACGTCATTTTTGGAAACTTTCGACCCAGTTTTCTCGAAAACTACCGCGACAAAGCACATTTTGAAAACAGATTTGGAATCAGGAAAATGTTAGCTTTCAGATGATATAGGTCATCACCCGTATCGCCACACCCGAGTTGGGGCCTTCCCTAGTTAGAATCTCAGAATTTCAGAACTTCAGAATTTTCGAGTTTTAGAATTTTAATTTTGGAACTTTTGAAATTCAGAGCTTTCGAATTTTCGAATTCTCAAATTTTTTCAAATCCTCAAAATTTGAAATTTTCCGAATTTTCGAATTTGAGAGCCCGTTGTCCATCCATTTCCCATTGTCCAACATCTGTCCGAGTGGGTTCTCGGAGCATCTTAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27918</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>5558</contig_pos>
        <strand>+</strand>
        <context>TCTCTCCCAT[C/T]gacgrcttga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCCTCGTTGCTCCCCACACAAAAATAGAACTCTCTCATTTCTCTCCCAT</left_flank>
        <right_flank>GACGGCTTGACTGAATAGACGTCTAAATTTTCCTGGGAACTTTCTAGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTGAAAATCCACGTCATTTTTGGAAACTTTCGACCCAGTTTTCTCGAAAACTACCGCGACAAAGCACATTTTGAAAACAGATTTGGAATCAGGAAAATGTTAGCTTTCAGATGATATAGGTCATCACCCGTATCGCCACACCCGAGTTGGGGCCTTCCCTAGTTAGAATCTCAGAATTTCAGAACTTCAGAATTTTCGAGTTTTAGAATTTTAATTTTGGAACTTTTGAAATTCAGAGCTTTCGAATTTTCGAATTCTCAAATTTTTTCAAATCCTCAAAATTTGAAATTTTCCGAATTTTCGAATTTGAGAGCCCGTTGTCCATCCATTTCCCATTGTCCAACATCTGTCCGAGTGGGTTCTCGGAGCATCTTAAGACCTCCCTGTGTGTAATTTAGAGAGTGCACTAATTGAAGAGACGATAAGAAGCAGAAAAACAAGTCGTCTCTCCTCGTTGCTCCCCACACAAAAATAGAACTCTCTCATTTCTCTCCCATCGACGGCTTGACTGAATAGACGTCTAAATTTTCCTGGGAACTTTCTAGAAATCCTAAAAAGTGATTGGATTCTGAAGTTTTCTTGTCTTGATTTTTCTGAATATTGTCTGTATTTATTTTCCTACTAATCTGTTTAGAAATCATAAATTTAAAGATTTTGTAATATTGAGCTCGCATCTTATAATGTGAGTTTTTTTTTCGGAAATTTGATCGGTTTTATTTGAAAATGTTGAGTTTTGGGTGAATTAAAATAACTTTGGTCATAAAACTGTGAATATTACAATTAAAAATTAATAATTTTGCATTGAAAATTGTGAATCAAGACAGTTAGAAATTCTGACGAAAAAGTGATAGGAAATTTTGGGAGAATTTTTTGACTTATCAGAAATTGACTTTTTTCAGAAAACAGACGCTCTGAAATGGCGAATTTACCACTTCTGGTGACAAGGAAAAGGACCGTGATGCTGCACATAAAAGGACAAAGAATTACTATGCCTTCCA</canonical>
            <polymorphic>GATTGAAAATCCACGTCATTTTTGGAAACTTTCGACCCAGTTTTCTCGAAAACTACCGCGACAAAGCACATTTTGAAAACAGATTTGGAATCAGGAAAATGTTAGCTTTCAGATGATATAGGTCATCACCCGTATCGCCACACCCGAGTTGGGGCCTTCCCTAGTTAGAATCTCAGAATTTCAGAACTTCAGAATTTTCGAGTTTTAGAATTTTAATTTTGGAACTTTTGAAATTCAGAGCTTTCGAATTTTCGAATTCTCAAATTTTTTCAAATCCTCAAAATTTGAAATTTTCCGAATTTTCGAATTTGAGAGCCCGTTGTCCATCCATTTCCCATTGTCCAACATCTGTCCGAGTGGGTTCTCGGAGCATCTTAAGACCTCCCTGTGTGTAATTTAGAGAGTGCACTAATTGAAGAGACGATAAGAAGCAGAAAAACAAGTCGTCTCTCCTCGTTGCTCCCCACACAAAAATAGAACTCTCTCATTTCTCTCCCATYGACGGCTTGACTGAATAGACGTCTAAATTTTCCTGGGAACTTTCTAGAAATCCTAAAAAGTGATTGGATTCTGAAGTTTTCTTGTCTTGATTTTTCTGAATATTGTCTGTATTTATTTTCCTACTAATCTGTTTAGAAATCATAAATTTAAAGATTTTGTAATATTGAGCTCGCATCTTATAATGTGAGTTTTTTTTTCGGAAATTTGATCGGTTTTATTTGAAAATGTTGAGTTTTGGGTGAATTAAAATAACTTTGGTCATAAAACTGTGAATATTACAATTAAAAATTAATAATTTTGCATTGAAAATTGTGAATCAAGACAGTTAGAAATTCTGACGAAAAAGTGATAGGAAATTTTGGGAGAATTTTTTGACTTATCAGAAATTGACTTTTTTCAGAAAACAGACGCTCTGAAATGGCGAATTTACCACTTCTGGTGACAAGGAAAAGGACCGTGATGCTGCACATAAAAGGACAAAGAATTACTATGCCTTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 196 152 51 46 33 14 8</canonical_bands>
                <polymorphic_bands>696 152 51 46 33 14 8</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATAAGAAGCAGAAAAACAAGTC</pcr_primer_p1>
		<pcr_primer_p2>GCGAGCTCAATATTACAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GATAAGAAGCAGAAAAACAAGTCGTCTCTCCTCGTTGCTCCCCACACAAAAATAGAACTCTCTCATTTCTCTCCCATCGACGGCTTGACTGAATAGACGTCTAAATTTTCCTGGGAACTTTCTAGAAATCCTAAAAAGTGATTGGATTCTGAAGTTTTCTTGTCTTGATTTTTCTGAATATTGTCTGTATTTATTTTCCTACTAATCTGTTTAGAAATCATAAATTTAAAGATTTTGTAATATTGAGCTCGC</canonical_amplicon>
		<polymorphic_amplicon>GATAAGAAGCAGAAAAACAAGTCGTCTCTCCTCGTTGCTCCCCACACAAAAATAGAACTCTCTCATTTCTCTCCCATYGACGGCTTGACTGAATAGACGTCTAAATTTTCCTGGGAACTTTCTAGAAATCCTAAAAAGTGATTGGATTCTGAAGTTTTCTTGTCTTGATTTTTCTGAATATTGTCTGTATTTATTTTCCTACTAATCTGTTTAGAAATCATAAATTTAAAGATTTTGTAATATTGAGCTCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27919</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>5563</contig_pos>
        <strand></strand>
        <context>CCCATYgacg[G/A]cttgactgaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGTTGCTCCCCACACAAAAATAGAACTCTCTCATTTCTCTCCCATCGACG</left_flank>
        <right_flank>CTTGACTGAATAGACGTCTAAATTTTCCTGGGAACTTTCTAGAAATCCTA</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATCCACGTCATTTTTGGAAACTTTCGACCCAGTTTTCTCGAAAACTACCGCGACAAAGCACATTTTGAAAACAGATTTGGAATCAGGAAAATGTTAGCTTTCAGATGATATAGGTCATCACCCGTATCGCCACACCCGAGTTGGGGCCTTCCCTAGTTAGAATCTCAGAATTTCAGAACTTCAGAATTTTCGAGTTTTAGAATTTTAATTTTGGAACTTTTGAAATTCAGAGCTTTCGAATTTTCGAATTCTCAAATTTTTTCAAATCCTCAAAATTTGAAATTTTCCGAATTTTCGAATTTGAGAGCCCGTTGTCCATCCATTTCCCATTGTCCAACATCTGTCCGAGTGGGTTCTCGGAGCATCTTAAGACCTCCCTGTGTGTAATTTAGAGAGTGCACTAATTGAAGAGACGATAAGAAGCAGAAAAACAAGTCGTCTCTCCTCGTTGCTCCCCACACAAAAATAGAACTCTCTCATTTCTCTCCCATCGACGGCTTGACTGAATAGACGTCTAAATTTTCCTGGGAACTTTCTAGAAATCCTAAAAAGTGATTGGATTCTGAAGTTTTCTTGTCTTGATTTTTCTGAATATTGTCTGTATTTATTTTCCTACTAATCTGTTTAGAAATCATAAATTTAAAGATTTTGTAATATTGAGCTCGCATCTTATAATGTGAGTTTTTTTTTCGGAAATTTGATCGGTTTTATTTGAAAATGTTGAGTTTTGGGTGAATTAAAATAACTTTGGTCATAAAACTGTGAATATTACAATTAAAAATTAATAATTTTGCATTGAAAATTGTGAATCAAGACAGTTAGAAATTCTGACGAAAAAGTGATAGGAAATTTTGGGAGAATTTTTTGACTTATCAGAAATTGACTTTTTTCAGAAAACAGACGCTCTGAAATGGCGAATTTACCACTTCTGGTGACAAGGAAAAGGACCGTGATGCTGCACATAAAAGGACAAAGAATTACTATGCCTTCCACTGAT</canonical>
            <polymorphic>AAAATCCACGTCATTTTTGGAAACTTTCGACCCAGTTTTCTCGAAAACTACCGCGACAAAGCACATTTTGAAAACAGATTTGGAATCAGGAAAATGTTAGCTTTCAGATGATATAGGTCATCACCCGTATCGCCACACCCGAGTTGGGGCCTTCCCTAGTTAGAATCTCAGAATTTCAGAACTTCAGAATTTTCGAGTTTTAGAATTTTAATTTTGGAACTTTTGAAATTCAGAGCTTTCGAATTTTCGAATTCTCAAATTTTTTCAAATCCTCAAAATTTGAAATTTTCCGAATTTTCGAATTTGAGAGCCCGTTGTCCATCCATTTCCCATTGTCCAACATCTGTCCGAGTGGGTTCTCGGAGCATCTTAAGACCTCCCTGTGTGTAATTTAGAGAGTGCACTAATTGAAGAGACGATAAGAAGCAGAAAAACAAGTCGTCTCTCCTCGTTGCTCCCCACACAAAAATAGAACTCTCTCATTTCTCTCCCATCGACGRCTTGACTGAATAGACGTCTAAATTTTCCTGGGAACTTTCTAGAAATCCTAAAAAGTGATTGGATTCTGAAGTTTTCTTGTCTTGATTTTTCTGAATATTGTCTGTATTTATTTTCCTACTAATCTGTTTAGAAATCATAAATTTAAAGATTTTGTAATATTGAGCTCGCATCTTATAATGTGAGTTTTTTTTTCGGAAATTTGATCGGTTTTATTTGAAAATGTTGAGTTTTGGGTGAATTAAAATAACTTTGGTCATAAAACTGTGAATATTACAATTAAAAATTAATAATTTTGCATTGAAAATTGTGAATCAAGACAGTTAGAAATTCTGACGAAAAAGTGATAGGAAATTTTGGGAGAATTTTTTGACTTATCAGAAATTGACTTTTTTCAGAAAACAGACGCTCTGAAATGGCGAATTTACCACTTCTGGTGACAAGGAAAAGGACCGTGATGCTGCACATAAAAGGACAAAGAATTACTATGCCTTCCACTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>504 352 144</canonical_bands>
                <polymorphic_bands>856 144</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>336 190 164 100 86 75 49</canonical_bands>
                <polymorphic_bands>354 336 100 86 75 49</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATAAGAAGCAGAAAAACAAGTC</pcr_primer_p1>
		<pcr_primer_p2>GCGAGCTCAATATTACAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GATAAGAAGCAGAAAAACAAGTCGTCTCTCCTCGTTGCTCCCCACACAAAAATAGAACTCTCTCATTTCTCTCCCATCGACGGCTTGACTGAATAGACGTCTAAATTTTCCTGGGAACTTTCTAGAAATCCTAAAAAGTGATTGGATTCTGAAGTTTTCTTGTCTTGATTTTTCTGAATATTGTCTGTATTTATTTTCCTACTAATCTGTTTAGAAATCATAAATTTAAAGATTTTGTAATATTGAGCTCGC</canonical_amplicon>
		<polymorphic_amplicon>GATAAGAAGCAGAAAAACAAGTCGTCTCTCCTCGTTGCTCCCCACACAAAAATAGAACTCTCTCATTTCTCTCCCATCGACGRCTTGACTGAATAGACGTCTAAATTTTCCTGGGAACTTTCTAGAAATCCTAAAAAGTGATTGGATTCTGAAGTTTTCTTGTCTTGATTTTTCTGAATATTGTCTGTATTTATTTTCCTACTAATCTGTTTAGAAATCATAAATTTAAAGATTTTGTAATATTGAGCTCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27920</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>5807</contig_pos>
        <strand>+</strand>
        <context>GGTGAATTAA[A/T]ATAACTTTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGGAAATTTGATCGGTTTTATTTGAAAATGTTGAGTTTTGGGTGAATTAA</left_flank>
        <right_flank>ATAACTTTGGTCATAAAACTGTGAATATTACAATTAAAAATTAATAATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGAATTCTCAAATTTTTTCAAATCCTCAAAATTTGAAATTTTCCGAATTTTCGAATTTGAGAGCCCGTTGTCCATCCATTTCCCATTGTCCAACATCTGTCCGAGTGGGTTCTCGGAGCATCTTAAGACCTCCCTGTGTGTAATTTAGAGAGTGCACTAATTGAAGAGACGATAAGAAGCAGAAAAACAAGTCGTCTCTCCTCGTTGCTCCCCACACAAAAATAGAACTCTCTCATTTCTCTCCCATCGACGGCTTGACTGAATAGACGTCTAAATTTTCCTGGGAACTTTCTAGAAATCCTAAAAAGTGATTGGATTCTGAAGTTTTCTTGTCTTGATTTTTCTGAATATTGTCTGTATTTATTTTCCTACTAATCTGTTTAGAAATCATAAATTTAAAGATTTTGTAATATTGAGCTCGCATCTTATAATGTGAGTTTTTTTTTCGGAAATTTGATCGGTTTTATTTGAAAATGTTGAGTTTTGGGTGAATTAAAATAACTTTGGTCATAAAACTGTGAATATTACAATTAAAAATTAATAATTTTGCATTGAAAATTGTGAATCAAGACAGTTAGAAATTCTGACGAAAAAGTGATAGGAAATTTTGGGAGAATTTTTTGACTTATCAGAAATTGACTTTTTTCAGAAAACAGACGCTCTGAAATGGCGAATTTACCACTTCTGGTGACAAGGAAAAGGACCGTGATGCTGCACATAAAAGGACAAAGAATTACTATGCCTTCCACTGATGTCAAAGTTTACGGATTTTATCGGGATTCAACTCAAACGGAAGTGTTAGTGGACATGGAGCTTTTGAAACATCTGAGTGAGACATTGCTTCCTACACTGAATGTTGCCAAGTCTTGTCCACTGCTTCATCTTCAAGATGACTCAACGATCTCAAACTCTCGAGATTTATGAATCGTTTGTATCAGCTTCACAGAATTTATGATTTCCGCACATGGGACGTTACAATTGTGAAATTAGAAGTTCC</canonical>
            <polymorphic>TTTCGAATTCTCAAATTTTTTCAAATCCTCAAAATTTGAAATTTTCCGAATTTTCGAATTTGAGAGCCCGTTGTCCATCCATTTCCCATTGTCCAACATCTGTCCGAGTGGGTTCTCGGAGCATCTTAAGACCTCCCTGTGTGTAATTTAGAGAGTGCACTAATTGAAGAGACGATAAGAAGCAGAAAAACAAGTCGTCTCTCCTCGTTGCTCCCCACACAAAAATAGAACTCTCTCATTTCTCTCCCATCGACGGCTTGACTGAATAGACGTCTAAATTTTCCTGGGAACTTTCTAGAAATCCTAAAAAGTGATTGGATTCTGAAGTTTTCTTGTCTTGATTTTTCTGAATATTGTCTGTATTTATTTTCCTACTAATCTGTTTAGAAATCATAAATTTAAAGATTTTGTAATATTGAGCTCGCATCTTATAATGTGAGTTTTTTTTTCGGAAATTTGATCGGTTTTATTTGAAAATGTTGAGTTTTGGGTGAATTAAWATAACTTTGGTCATAAAACTGTGAATATTACAATTAAAAATTAATAATTTTGCATTGAAAATTGTGAATCAAGACAGTTAGAAATTCTGACGAAAAAGTGATAGGAAATTTTGGGAGAATTTTTTGACTTATCAGAAATTGACTTTTTTCAGAAAACAGACGCTCTGAAATGGCGAATTTACCACTTCTGGTGACAAGGAAAAGGACCGTGATGCTGCACATAAAAGGACAAAGAATTACTATGCCTTCCACTGATGTCAAAGTTTACGGATTTTATCGGGATTCAACTCAAACGGAAGTGTTAGTGGACATGGAGCTTTTGAAACATCTGAGTGAGACATTGCTTCCTACACTGAATGTTGCCAAGTCTTGTCCACTGCTTCATCTTCAAGATGACTCAACGATCTCAAACTCTCGAGATTTATGAATCGTTTGTATCAGCTTCACAGAATTTATGATTTCCGCACATGGGACGTTACAATTGTGAAATTAGAAGTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCATCTTATAATGTGAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTCAGAGCGTCTGTTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGCATCTTATAATGTGAGTTTTTTTTTCGGAAATTTGATCGGTTTTATTTGAAAATGTTGAGTTTTGGGTGAATTAAAATAACTTTGGTCATAAAACTGTGAATATTACAATTAAAAATTAATAATTTTGCATTGAAAATTGTGAATCAAGACAGTTAGAAATTCTGACGAAAAAGTGATAGGAAATTTTGGGAGAATTTTTTGACTTATCAGAAATTGACTTTTTTCAGAAAACAGACGCTCTGAAAT</canonical_amplicon>
		<polymorphic_amplicon>CGCATCTTATAATGTGAGTTTTTTTTTCGGAAATTTGATCGGTTTTATTTGAAAATGTTGAGTTTTGGGTGAATTAAWATAACTTTGGTCATAAAACTGTGAATATTACAATTAAAAATTAATAATTTTGCATTGAAAATTGTGAATCAAGACAGTTAGAAATTCTGACGAAAAAGTGATAGGAAATTTTGGGAGAATTTTTTGACTTATCAGAAATTGACTTTTTTCAGAAAACAGACGCTCTGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27921</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>6072</contig_pos>
        <strand>+</strand>
        <context>ATGTCAAAGT[G/T]TACGGATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTGCACATAAAAGGACAAAGAATTACTATGCCTTCCACTGATGTCAAAGT</left_flank>
        <right_flank>TACGGATTTTATCGGGATTCAACTCAAACGGAAGTGTTAGTGGACATGGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGACGTCTAAATTTTCCTGGGAACTTTCTAGAAATCCTAAAAAGTGATTGGATTCTGAAGTTTTCTTGTCTTGATTTTTCTGAATATTGTCTGTATTTATTTTCCTACTAATCTGTTTAGAAATCATAAATTTAAAGATTTTGTAATATTGAGCTCGCATCTTATAATGTGAGTTTTTTTTTCGGAAATTTGATCGGTTTTATTTGAAAATGTTGAGTTTTGGGTGAATTAAAATAACTTTGGTCATAAAACTGTGAATATTACAATTAAAAATTAATAATTTTGCATTGAAAATTGTGAATCAAGACAGTTAGAAATTCTGACGAAAAAGTGATAGGAAATTTTGGGAGAATTTTTTGACTTATCAGAAATTGACTTTTTTCAGAAAACAGACGCTCTGAAATGGCGAATTTACCACTTCTGGTGACAAGGAAAAGGACCGTGATGCTGCACATAAAAGGACAAAGAATTACTATGCCTTCCACTGATGTCAAAGTTTACGGATTTTATCGGGATTCAACTCAAACGGAAGTGTTAGTGGACATGGAGCTTTTGAAACATCTGAGTGAGACATTGCTTCCTACACTGAATGTTGCCAAGTCTTGTCCACTGCTTCATCTTCAAGATGACTCAACGATCTCAAACTCTCGAGATTTATGAATCGTTTGTATCAGCTTCACAGAATTTATGATTTCCGCACATGGGACGTTACAATTGTGAAATTAGAAGTTCCGATATCAGTGTAATATCTCAAAAATGGATCGTTGAAGACTCTTTATGAGTATAGGATTTCATTAATTTTGTCAATATAATAATTTGAAAATAAAATTTTATCAATTAAATATAATTACAATTACAATTAAACCATGTTAAAGAGAATCGAAGAATCCAGTTCGTCATCAAATTGATGTCCATCCGGCAATAATTTTCCTTTTTTTGAATATCTGCTTCTGATGGCAACGTTACAGATGATTCCATTAATTGTACTTTTCTTTAAC</canonical>
            <polymorphic>ATAGACGTCTAAATTTTCCTGGGAACTTTCTAGAAATCCTAAAAAGTGATTGGATTCTGAAGTTTTCTTGTCTTGATTTTTCTGAATATTGTCTGTATTTATTTTCCTACTAATCTGTTTAGAAATCATAAATTTAAAGATTTTGTAATATTGAGCTCGCATCTTATAATGTGAGTTTTTTTTTCGGAAATTTGATCGGTTTTATTTGAAAATGTTGAGTTTTGGGTGAATTAAAATAACTTTGGTCATAAAACTGTGAATATTACAATTAAAAATTAATAATTTTGCATTGAAAATTGTGAATCAAGACAGTTAGAAATTCTGACGAAAAAGTGATAGGAAATTTTGGGAGAATTTTTTGACTTATCAGAAATTGACTTTTTTCAGAAAACAGACGCTCTGAAATGGCGAATTTACCACTTCTGGTGACAAGGAAAAGGACCGTGATGCTGCACATAAAAGGACAAAGAATTACTATGCCTTCCACTGATGTCAAAGTKTACGGATTTTATCGGGATTCAACTCAAACGGAAGTGTTAGTGGACATGGAGCTTTTGAAACATCTGAGTGAGACATTGCTTCCTACACTGAATGTTGCCAAGTCTTGTCCACTGCTTCATCTTCAAGATGACTCAACGATCTCAAACTCTCGAGATTTATGAATCGTTTGTATCAGCTTCACAGAATTTATGATTTCCGCACATGGGACGTTACAATTGTGAAATTAGAAGTTCCGATATCAGTGTAATATCTCAAAAATGGATCGTTGAAGACTCTTTATGAGTATAGGATTTCATTAATTTTGTCAATATAATAATTTGAAAATAAAATTTTATCAATTAAATATAATTACAATTACAATTAAACCATGTTAAAGAGAATCGAAGAATCCAGTTCGTCATCAAATTGATGTCCATCCGGCAATAATTTTCCTTTTTTTGAATATCTGCTTCTGATGGCAACGTTACAGATGATTCCATTAATTGTACTTTTCTTTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACGAAAAAGTGATAGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTCTCACTCAGATGTTTCAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TGACGAAAAAGTGATAGGAAATTTTGGGAGAATTTTTTGACTTATCAGAAATTGACTTTTTTCAGAAAACAGACGCTCTGAAATGGCGAATTTACCACTTCTGGTGACAAGGAAAAGGACCGTGATGCTGCACATAAAAGGACAAAGAATTACTATGCCTTCCACTGATGTCAAAGTTTACGGATTTTATCGGGATTCAACTCAAACGGAAGTGTTAGTGGACATGGAGCTTTTGAAACATCTGAGTGAGAC</canonical_amplicon>
		<polymorphic_amplicon>TGACGAAAAAGTGATAGGAAATTTTGGGAGAATTTTTTGACTTATCAGAAATTGACTTTTTTCAGAAAACAGACGCTCTGAAATGGCGAATTTACCACTTCTGGTGACAAGGAAAAGGACCGTGATGCTGCACATAAAAGGACAAAGAATTACTATGCCTTCCACTGATGTCAAAGTKTACGGATTTTATCGGGATTCAACTCAAACGGAAGTGTTAGTGGACATGGAGCTTTTGAAACATCTGAGTGAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27922</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>27852</contig_pos>
        <strand>+</strand>
        <context>TAATTTGTTY[C/T]TGAAAAATAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTT</left_flank>
        <right_flank>TGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTTATTAAATTTTTTGTATAGAAATATTGAAGATTTTTTTGTTTTTGAGCCGGTTTAGGCTTATTTATCCAATAAATTGATTTTTTTTTAAATTTAAAAATCAATTTTCAACCCACAAAGCACGGATAAGATTCTTGAATTGGTGCAAATCTTTGATCAAAAGCATCCAGAATAACCACTGCCGTCAATGGTGGCTCCTCTTTTTTGACGCCTTTCTTAAAGGCCGACGATGGTGGTGTCATGGTGGACTTTTCGGTTGTTTTTTTGATTGTTTCTGCAAGAAAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTCCAAAATTCCCTCCTGTTCAATGGAGTGCGTTTGCTTTTCTTAGTCATTTTCCACCCTTTTTGCAGTTTTTGGCTGAAATTGAATGAAAATTCGGGTTTTTTGTTTTTCAAGTAGCTTTAAAGCATCAGATTTTTCTCATGGAGCAAAAAATCGGTCCCTATAGTATTGCGTAAGTGAAGAGAAATCGAAAAAAAATTTCATAAAAACCAATTTTTTTCAGATTGGTCTCAGATTTTTTCTG</canonical>
            <polymorphic>GATTTTATTAAATTTTTTGTATAGAAATATTGAAGATTTTTTTGTTTTTGAGCCGGTTTAGGCTTATTTATCCAATAAATTGATTTTTTTTTAAATTTAAAAATCAATTTTCAACCCACAAAGCACGGATAAGATTCTTGAATTGGTGCAAATCTTTGATCAAAAGCATCCAGAATAACCACTGCCGTCAATGGTGGCTCCTCTTTTTTGACGCCTTTCTTAAAGGCCGACGATGGTGGTGTCATGGTGGACTTTTCGGTTGTTTTTTTGATTGTTTCTGCAAGAAAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTYTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTCCAAAATTCCCTCCTGTTCAATGGAGTGCGTTTGCTTTTCTTAGTCATTTTCCACCCTTTTTGCAGTTTTTGGCTGAAATTGAATGAAAATTCGGGTTTTTTGTTTTTCAAGTAGCTTTAAAGCATCAGATTTTTCTCATGGAGCAAAAAATCGGTCCCTATAGTATTGCGTAAGTGAAGAGAAATCGAAAAAAAATTTCATAAAAACCAATTTTTTTCAGATTGGTCTCAGATTTTTTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTGATGATCCCAGAGT</pcr_primer_p1>
		<pcr_primer_p2>CATTCTTCGCAAAAATTATCA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTYTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27923</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>27886</contig_pos>
        <strand>+</strand>
        <context>AAACCTGAAM[A/C]ATAACCAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAA</left_flank>
        <right_flank>ATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTTTTTGTTTTTGAGCCGGTTTAGGCTTATTTATCCAATAAATTGATTTTTTTTTAAATTTAAAAATCAATTTTCAACCCACAAAGCACGGATAAGATTCTTGAATTGGTGCAAATCTTTGATCAAAAGCATCCAGAATAACCACTGCCGTCAATGGTGGCTCCTCTTTTTTGACGCCTTTCTTAAAGGCCGACGATGGTGGTGTCATGGTGGACTTTTCGGTTGTTTTTTTGATTGTTTCTGCAAGAAAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTCCAAAATTCCCTCCTGTTCAATGGAGTGCGTTTGCTTTTCTTAGTCATTTTCCACCCTTTTTGCAGTTTTTGGCTGAAATTGAATGAAAATTCGGGTTTTTTGTTTTTCAAGTAGCTTTAAAGCATCAGATTTTTCTCATGGAGCAAAAAATCGGTCCCTATAGTATTGCGTAAGTGAAGAGAAATCGAAAAAAAATTTCATAAAAACCAATTTTTTTCAGATTGGTCTCAGATTTTTTCTGTCCAAATGCGGGTGGTGTGGAGACGCATATCTAT</canonical>
            <polymorphic>GATTTTTTTGTTTTTGAGCCGGTTTAGGCTTATTTATCCAATAAATTGATTTTTTTTTAAATTTAAAAATCAATTTTCAACCCACAAAGCACGGATAAGATTCTTGAATTGGTGCAAATCTTTGATCAAAAGCATCCAGAATAACCACTGCCGTCAATGGTGGCTCCTCTTTTTTGACGCCTTTCTTAAAGGCCGACGATGGTGGTGTCATGGTGGACTTTTCGGTTGTTTTTTTGATTGTTTCTGCAAGAAAAGGAGAATATTTTGGTGTTGAAGGCAGCAAAAATGAGAAAAATCGATGAATTTTGAAGGAATTCGTGTTATGAAATGGCTGAAAAATCGAAAAAATTGATGATCCCAGAGTGCGGTGGAGCGCACTTGCACGCGCATGTTGTGAAAATCTTGGAGCGACGGAAAAAAGGAATATTTTAGGTTTATAAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAMATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATCAAAAATTAAATTGAATTCAAATATTAGCTGTTCCCTCCAAAATTCCCTCCTGTTCAATGGAGTGCGTTTGCTTTTCTTAGTCATTTTCCACCCTTTTTGCAGTTTTTGGCTGAAATTGAATGAAAATTCGGGTTTTTTGTTTTTCAAGTAGCTTTAAAGCATCAGATTTTTCTCATGGAGCAAAAAATCGGTCCCTATAGTATTGCGTAAGTGAAGAGAAATCGAAAAAAAATTTCATAAAAACCAATTTTTTTCAGATTGGTCTCAGATTTTTTCTGTCCAAATGCGGGTGGTGTGGAGACGCATATCTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAAAAATGAGTGTTTAATTTGT</pcr_primer_p1>
		<pcr_primer_p2>GATGATTTTGTCAGCGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAAATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATC</canonical_amplicon>
		<polymorphic_amplicon>AAAGAAAAATGAGTGTTTAATTTGTTTTTGAAAAATAAAATTCAGTGCATAAAACCTGAAAMATAACCAAAATCGGTTTCGAAACCACCTTTCTGTATTTCTAGTTCTAATAAAGCGAAAATGATAATTTTTGCGAAGAATGTACCTAGACTTAAAAGTCTATTCAATTTTATTCAAAATATAAATTGTTTCCAAGATTTTTTCTATTCAATTATTGACCAAGTCCGCCGAAAACGCTGACAAAATCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27924</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>30718</contig_pos>
        <strand></strand>
        <context>tctcgagttt[C/T]agcgattttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATGAGACTGGTGGAAATGCTATAATTTCATATCGATTTTTCTCGAGTTT</left_flank>
        <right_flank>AGCGATTTTTGCAGGTAGAGACTACTATTACGTAAAAGCCCATACTCGAT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGCCGTTTTTCGGGGATTTCGGATTTTCTTTGAATTTTTTCGCAATAATATTTGAAAAATAGATAAATTTTAACACATTTTAATGCATTAAAAATTTCTGGTCGGAGTCCCCCTTTAAAAATTCGTCAAAAAAAGTGTGTGGTGATTTTTTTCAAAAAAAAATTTTTTTTGAAATTATTCGAAAATCATTGCAAATCATTGAAAATGTTCAAGAAGTGTCTCCCATTTTCCAAACCTTTGGAAAACGACTTTTTAAGTTTGAAAAATAAGAAAAAAATAAAAGAACGAGGACCCGAACCTGCATGTGTGCATTCGTGGTCCTTCCTGCTAGCCACTAGGCTACCGAAACATGTTTTACTCTAGCATGCAACGCAGTGAAGAAAGGGGAGGAGAAGGGAGACGATGAGACTGGTGGAAATGCTATAATTTCATATCGATTTTTCTCGAGTTTCAGCGATTTTTGCAGGTAGAGACTACTATTACGTAAAAGCCCATACTCGATTCTATAAATGAGCCAATTTAGAGAAAATTCTGAAGAGCTTTTTGAACGACATTCCCTTGTCAGTGGCCTAGAAAACCCCAAAATCGGCCATTCCAAAAACCTAAAAGTCCAATTTCCAGACATTCTCCGCACTGGCCCACGAATCTTTAATGATCGTGGTCTGATGGGTCTCCGAACCGTTTTTCACCNNGTCATTCCCTTTTCGGATTCGCCGACGCGTCTGCAATCCTCACGAACACGCTAGTACTACAGTACTCCCTTATCAACGTCGATCAAATAATCTGCGTCTCGTATACGTCGAAAGAGAATACTGTACTACGTGGAAAGCTGGACCCAAATAAGGTTTCAACGATTCCGAATGCTATTGAGACATCGCTGTTCACTCCGGACACTGATCAGTTTTTCAAAAATCCAACGACAATTATCTTTTTGGGACGACTGGTTTATCGG</canonical>
            <polymorphic>ATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGCCGTTTTTCGGGGATTTCGGATTTTCTTTGAATTTTTTCGCAATAATATTTGAAAAATAGATAAATTTTAACACATTTTAATGCATTAAAAATTTCTGGTCGGAGTCCCCCTTTAAAAATTCGTCAAAAAAAGTGTGTGGTGATTTTTTTCAAAAAAAAATTTTTTTTGAAATTATTCGAAAATCATTGCAAATCATTGAAAATGTTCAAGAAGTGTCTCCCATTTTCCAAACCTTTGGAAAACGACTTTTTAAGTTTGAAAAATAAGAAAAAAATAAAAGAACGAGGACCCGAACCTGCATGTGTGCATTCGTGGTCCTTCCTGCTAGCCACTAGGCTACCGAAACATGTTTTACTCTAGCATGCAACGCAGTGAAGAAAGGGGAGGAGAAGGGAGACGATGAGACTGGTGGAAATGCTATAATTTCATATCGATTTTTCTCGAGTTTYAGCGATTTTTGCAGGTAGAGACTACTATTACGTAAAAGCCCATACTCGATTCTATAAATGAGCCAATTTAGAGAAAATTCTGAAGAGCTTTTTGAACGACATTCCCTTGTCAGTGGCCTAGAAAACCCCAAAATCGGCCATTCCAAAAACCTAAAAGTCCAATTTCCAGACATTCTCCGCACTGGCCCACGAATCTTTAATGATCGTGGTCTGATGGGTCTCCGAACCGTTTTTCACCNNGTCATTCCCTTTTCGGATTCGCCGACGCGTCTGCAATCCTCACGAACACGCTAGTACTACAGTACTCCCTTATCAACGTCGATCAAATAATCTGCGTCTCGTATACGTCGAAAGAGAATACTGTACTACGTGGAAAGCTGGACCCAAATAAGGTTTCAACGATTCCGAATGCTATTGAGACATCGCTGTTCACTCCGGACACTGATCAGTTTTTCAAAAATCCAACGACAATTATCTTTTTGGGACGACTGGTTTATCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAAATTTCTGGTCGGAGTC</pcr_primer_p1>
		<pcr_primer_p2>GAAATTGGACTTTTAGGTTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>530</pcr_amplicon_size>
		<canonical_amplicon>TAAAAATTTCTGGTCGGAGTCCCCCTTTAAAAATTCGTCAAAAAAAGTGTGTGGTGATTTTTTTCAAAAAAAAATTTTTTTTGAAATTATTCGAAAATCATTGCAAATCATTGAAAATGTTCAAGAAGTGTCTCCCATTTTCCAAACCTTTGGAAAACGACTTTTTAAGTTTGAAAAATAAGAAAAAAATAAAAGAACGAGGACCCGAACCTGCATGTGTGCATTCGTGGTCCTTCCTGCTAGCCACTAGGCTACCGAAACATGTTTTACTCTAGCATGCAACGCAGTGAAGAAAGGGGAGGAGAAGGGAGACGATGAGACTGGTGGAAATGCTATAATTTCATATCGATTTTTCTCGAGTTTCAGCGATTTTTGCAGGTAGAGACTACTATTACGTAAAAGCCCATACTCGATTCTATAAATGAGCCAATTTAGAGAAAATTCTGAAGAGCTTTTTGAACGACATTCCCTTGTCAGTGGCCTAGAAAACCCCAAAATCGGCCATTCCAAAAACCTAAAAGTCCAATTTC</canonical_amplicon>
		<polymorphic_amplicon>TAAAAATTTCTGGTCGGAGTCCCCCTTTAAAAATTCGTCAAAAAAAGTGTGTGGTGATTTTTTTCAAAAAAAAATTTTTTTTGAAATTATTCGAAAATCATTGCAAATCATTGAAAATGTTCAAGAAGTGTCTCCCATTTTCCAAACCTTTGGAAAACGACTTTTTAAGTTTGAAAAATAAGAAAAAAATAAAAGAACGAGGACCCGAACCTGCATGTGTGCATTCGTGGTCCTTCCTGCTAGCCACTAGGCTACCGAAACATGTTTTACTCTAGCATGCAACGCAGTGAAGAAAGGGGAGGAGAAGGGAGACGATGAGACTGGTGGAAATGCTATAATTTCATATCGATTTTTCTCGAGTTTYAGCGATTTTTGCAGGTAGAGACTACTATTACGTAAAAGCCCATACTCGATTCTATAAATGAGCCAATTTAGAGAAAATTCTGAAGAGCTTTTTGAACGACATTCCCTTGTCAGTGGCCTAGAAAACCCCAAAATCGGCCATTCCAAAAACCTAAAAGTCCAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27925</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>76166</contig_pos>
        <strand>+</strand>
        <context>CTAAGCATAA[A/G]AAAATTTAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTCGGGTTTTGAGATTCTGGAATTTTCAAATTCTAACTTCTAAGCATAA</left_flank>
        <right_flank>AAAATTTAGATACCGTAAAACATTTCATCATCAGGAGGATCCCTCAAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGAATCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGCCTCTGAGATTCTGAGATTCTGAATTTCAAAGTTTCAGAATCTCTTAATTCCTGAGTTTCTAAATTTCTGAATTCCTGAATTTCAAAATATCAGAATTTCAAAGTTTAAGAATCTAAAAAATTTGTTTATTTTGTTTTTCTGACGTTCTCGGGTTTTGAGATTCTGGAATTTTCAAATTCTAACTTCTAAGCATAAGAAAATTTAGATACCGTAAAACATTTCATCATCAGGAGGATCCCTCAAATAGAAGGTCCCTAAAAATAGGAGGTCTGAACCTTATAATTAAAGCTTTACAGTACTTGAAATCTTAAAAATTCAACGTTTTGAATGTTCCAGGATCCCACAATTCCCTAAAAGTACATTTCCAATCTAATCCTCCGTGTCTCTTCTTCAGATTCTATTCGTTTATTAGCTGTGGTTACATAATTTGAAAACCAAAACGAGAATACATTCAACAAACAATTCTTCGGTGAGAAAATTCCCCGCTTTTCCTTCTTCTTCTCCTTCTCCGATTCTTGTTCATATTTCGAATCGGAGAAGAAGAAATGAGTGCTCGAACAATAAATAAACAAAACGAACCTCTCCCTTGCCTGTCATTCCTTCAGACAGAAAGCGCCAAACAAGGCAAGAAGCCTAAAGAGTGTGTGATTGGAAGAGACGCAGAGGCGAAAGTTCTTCTTCTTCTTACTCCATCTC</canonical>
            <polymorphic>TTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGAATCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGCCTCTGAGATTCTGAGATTCTGAATTTCAAAGTTTCAGAATCTCTTAATTCCTGAGTTTCTAAATTTCTGAATTCCTGAATTTCAAAATATCAGAATTTCAAAGTTTAAGAATCTAAAAAATTTGTTTATTTTGTTTTTCTGACGTTCTCGGGTTTTGAGATTCTGGAATTTTCAAATTCTAACTTCTAAGCATAARAAAATTTAGATACCGTAAAACATTTCATCATCAGGAGGATCCCTCAAATAGAAGGTCCCTAAAAATAGGAGGTCTGAACCTTATAATTAAAGCTTTACAGTACTTGAAATCTTAAAAATTCAACGTTTTGAATGTTCCAGGATCCCACAATTCCCTAAAAGTACATTTCCAATCTAATCCTCCGTGTCTCTTCTTCAGATTCTATTCGTTTATTAGCTGTGGTTACATAATTTGAAAACCAAAACGAGAATACATTCAACAAACAATTCTTCGGTGAGAAAATTCCCCGCTTTTCCTTCTTCTTCTCCTTCTCCGATTCTTGTTCATATTTCGAATCGGAGAAGAAGAAATGAGTGCTCGAACAATAAATAAACAAAACGAACCTCTCCCTTGCCTGTCATTCCTTCAGACAGAAAGCGCCAAACAAGGCAAGAAGCCTAAAGAGTGTGTGATTGGAAGAGACGCAGAGGCGAAAGTTCTTCTTCTTCTTACTCCATCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTTTGTTTTTCTGACGTTCT</pcr_primer_p1>
		<pcr_primer_p2>GGAAATGTACTTTTAGGGAATTG</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTATTTTGTTTTTCTGACGTTCTCGGGTTTTGAGATTCTGGAATTTTCAAATTCTAACTTCTAAGCATAAGAAAATTTAGATACCGTAAAACATTTCATCATCAGGAGGATCCCTCAAATAGAAGGTCCCTAAAAATAGGAGGTCTGAACCTTATAATTAAAGCTTTACAGTACTTGAAATCTTAAAAATTCAACGTTTTGAATGTTCCAGGATCCCACAATTCCCTAAAAGTACATTTCC</canonical_amplicon>
		<polymorphic_amplicon>TTATTTTGTTTTTCTGACGTTCTCGGGTTTTGAGATTCTGGAATTTTCAAATTCTAACTTCTAAGCATAARAAAATTTAGATACCGTAAAACATTTCATCATCAGGAGGATCCCTCAAATAGAAGGTCCCTAAAAATAGGAGGTCTGAACCTTATAATTAAAGCTTTACAGTACTTGAAATCTTAAAAATTCAACGTTTTGAATGTTCCAGGATCCCACAATTCCCTAAAAGTACATTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27926</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>87349</contig_pos>
        <strand></strand>
        <context>TGAAATCAAC[A/T]TGAGAAWTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATATTTTGAAATCAAC</left_flank>
        <right_flank>TGAGAAATCGAGAGCCTACTGTCCAAATAGAGATTCTTCTTTTCTTGTTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGAACGACACCCGGATCGTCCACTGCTCAGCCNGTTGGACTCGTTGGATGAGTTCTGTTTTCTGACCCTTGGGATGTTGCTCAAGATGGCGTTGATTCTGGTAAGAAAACGTTTCATGTTGAGCTTTAGAACTTTTTATAAGCTCAGATCATGTCTATCCAAAAACGATCTGGATGCCAAACGAAAGTGTTCAAAGAGGATCATTAATGCACGGGCATGGAGATCCACTCTCTCCTTATTATCCTTCGAAGATAGAACTCTTTAAAGGAAAAACTATAAAGGAGGCTTATGACGATGGAACGCTCCCTTCCATCCCAGTACTTCCCGTATCGTATACTACTGCGCTACAATTGATGAAGAGNNNNNNNNNNCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTCACAGAAAATGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATATTTTGAAATCAACATGAGAAATCGAGAGCCTACTGTCCAAATAGAGATTCTTCTTTTCTTGTTTGTTCATAGATTGGTTTGTATCAAAAAACAAAGGAAACTAGACGTAGGGGTCGAGAGTGACAATCGGAGAAAAGTTCTGAGGAAATGAATAAATATTGAGGAAGAGAGAAACCTTTAAATTGAGCTCACTCGGTTGTCCAAATCATATCAATTTCAAATCTACTCGTTTTTCCGATATGGGGATCTCGGCTGAAGACAGTGGAAGGCGTTTGCTCAAATCGGAACATGGAACTTATATAAGGTTAGTTTATCTGGAACTTTGATCTTAATCCTATGTTTGCAGAGCCAATGCGCAGACGGTTGACTTGAAGAAGGGCAGTCCATGTGATTCGGAACATTGGTACATCGTGGATTTGGGATGCAAGGTAGCCACTTTTCCTTTTTCAAATATCTTCCTTATTAATAAAACGCTAGAGGCGTCTGTCCGTCCTCGCGTCCGTCTGTGGACTTT</canonical>
            <polymorphic>TAGAACGACACCCGGATCGTCCACTGCTCAGCCNGTTGGACTCGTTGGATGAGTTCTGTTTTCTGACCCTTGGGATGTTGCTCAAGATGGCGTTGATTCTGGTAAGAAAACGTTTCATGTTGAGCTTTAGAACTTTTTATAAGCTCAGATCATGTCTATCCAAAAACGATCTGGATGCCAAACGAAAGTGTTCAAAGAGGATCATTAATGCACGGGCATGGAGATCCACTCTCTCCTTATTATCCTTCGAAGATAGAACTCTTTAAAGGAAAAACTATAAAGGAGGCTTATGACGATGGAACGCTCCCTTCCATCCCAGTACTTCCCGTATCGTATACTACTGCGCTACAATTGATGAAGAGNNNNNNNNNNCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTCACAGAAAATGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATATTTTGAAATCAACWTGAGAAATCGAGAGCCTACTGTCCAAATAGAGATTCTTCTTTTCTTGTTTGTTCATAGATTGGTTTGTATCAAAAAACAAAGGAAACTAGACGTAGGGGTCGAGAGTGACAATCGGAGAAAAGTTCTGAGGAAATGAATAAATATTGAGGAAGAGAGAAACCTTTAAATTGAGCTCACTCGGTTGTCCAAATCATATCAATTTCAAATCTACTCGTTTTTCCGATATGGGGATCTCGGCTGAAGACAGTGGAAGGCGTTTGCTCAAATCGGAACATGGAACTTATATAAGGTTAGTTTATCTGGAACTTTGATCTTAATCCTATGTTTGCAGAGCCAATGCGCAGACGGTTGACTTGAAGAAGGGCAGTCCATGTGATTCGGAACATTGGTACATCGTGGATTTGGGATGCAAGGTAGCCACTTTTCCTTTTTCAAATATCTTCCTTATTAATAAAACGCTAGAGGCGTCTGTCCGTCCTCGCGTCCGTCTGTGGACTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>282 275 129 116 97 66 35</canonical_bands>
                <polymorphic_bands>557 129 116 97 66 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTCCCGTATCGTATACTACTG</pcr_primer_p1>
		<pcr_primer_p2>AAACCAATCTATGAACAAACAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACTTCCCGTATCGTATACTACTGCGCTACAATTGATGAAGAGNNNNNNNNNNCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTCACAGAAAATGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATATTTTGAAATCAACATGAGAAATCGAGAGCCTACTGTCCAAATAGAGATTCTTCTTTTCTTGTTTGTTCATAGATTGGTTT</canonical_amplicon>
		<polymorphic_amplicon>ACTTCCCGTATCGTATACTACTGCGCTACAATTGATGAAGAGNNNNNNNNNNCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTCACAGAAAATGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATATTTTGAAATCAACWTGAGAAATCGAGAGCCTACTGTCCAAATAGAGATTCTTCTTTTCTTGTTTGTTCATAGATTGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27927</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>87356</contig_pos>
        <strand>+</strand>
        <context>AACWTGAGAA[A/T]TCGAGAGCCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTCGTTCTATTAGAGGTTTTACGGTAATATTTTGAAATCAACATGAGAA</left_flank>
        <right_flank>TCGAGAGCCTACTGTCCAAATAGAGATTCTTCTTTTCTTGTTTGTTCATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACCCGGATCGTCCACTGCTCAGCCNGTTGGACTCGTTGGATGAGTTCTGTTTTCTGACCCTTGGGATGTTGCTCAAGATGGCGTTGATTCTGGTAAGAAAACGTTTCATGTTGAGCTTTAGAACTTTTTATAAGCTCAGATCATGTCTATCCAAAAACGATCTGGATGCCAAACGAAAGTGTTCAAAGAGGATCATTAATGCACGGGCATGGAGATCCACTCTCTCCTTATTATCCTTCGAAGATAGAACTCTTTAAAGGAAAAACTATAAAGGAGGCTTATGACGATGGAACGCTCCCTTCCATCCCAGTACTTCCCGTATCGTATACTACTGCGCTACAATTGATGAAGAGNNNNNNNNNNCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTCACAGAAAATGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATATTTTGAAATCAACATGAGAAATCGAGAGCCTACTGTCCAAATAGAGATTCTTCTTTTCTTGTTTGTTCATAGATTGGTTTGTATCAAAAAACAAAGGAAACTAGACGTAGGGGTCGAGAGTGACAATCGGAGAAAAGTTCTGAGGAAATGAATAAATATTGAGGAAGAGAGAAACCTTTAAATTGAGCTCACTCGGTTGTCCAAATCATATCAATTTCAAATCTACTCGTTTTTCCGATATGGGGATCTCGGCTGAAGACAGTGGAAGGCGTTTGCTCAAATCGGAACATGGAACTTATATAAGGTTAGTTTATCTGGAACTTTGATCTTAATCCTATGTTTGCAGAGCCAATGCGCAGACGGTTGACTTGAAGAAGGGCAGTCCATGTGATTCGGAACATTGGTACATCGTGGATTTGGGATGCAAGGTAGCCACTTTTCCTTTTTCAAATATCTTCCTTATTAATAAAACGCTAGAGGCGTCTGTCCGTCCTCGCGTCCGTCTGTGGACTTTTGAAAAA</canonical>
            <polymorphic>ACACCCGGATCGTCCACTGCTCAGCCNGTTGGACTCGTTGGATGAGTTCTGTTTTCTGACCCTTGGGATGTTGCTCAAGATGGCGTTGATTCTGGTAAGAAAACGTTTCATGTTGAGCTTTAGAACTTTTTATAAGCTCAGATCATGTCTATCCAAAAACGATCTGGATGCCAAACGAAAGTGTTCAAAGAGGATCATTAATGCACGGGCATGGAGATCCACTCTCTCCTTATTATCCTTCGAAGATAGAACTCTTTAAAGGAAAAACTATAAAGGAGGCTTATGACGATGGAACGCTCCCTTCCATCCCAGTACTTCCCGTATCGTATACTACTGCGCTACAATTGATGAAGAGNNNNNNNNNNCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTCACAGAAAATGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATATTTTGAAATCAACATGAGAAWTCGAGAGCCTACTGTCCAAATAGAGATTCTTCTTTTCTTGTTTGTTCATAGATTGGTTTGTATCAAAAAACAAAGGAAACTAGACGTAGGGGTCGAGAGTGACAATCGGAGAAAAGTTCTGAGGAAATGAATAAATATTGAGGAAGAGAGAAACCTTTAAATTGAGCTCACTCGGTTGTCCAAATCATATCAATTTCAAATCTACTCGTTTTTCCGATATGGGGATCTCGGCTGAAGACAGTGGAAGGCGTTTGCTCAAATCGGAACATGGAACTTATATAAGGTTAGTTTATCTGGAACTTTGATCTTAATCCTATGTTTGCAGAGCCAATGCGCAGACGGTTGACTTGAAGAAGGGCAGTCCATGTGATTCGGAACATTGGTACATCGTGGATTTGGGATGCAAGGTAGCCACTTTTCCTTTTTCAAATATCTTCCTTATTAATAAAACGCTAGAGGCGTCTGTCCGTCCTCGCGTCCGTCTGTGGACTTTTGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTCCCGTATCGTATACTACTG</pcr_primer_p1>
		<pcr_primer_p2>AAACCAATCTATGAACAAACAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACTTCCCGTATCGTATACTACTGCGCTACAATTGATGAAGAGNNNNNNNNNNCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTCACAGAAAATGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATATTTTGAAATCAACATGAGAAATCGAGAGCCTACTGTCCAAATAGAGATTCTTCTTTTCTTGTTTGTTCATAGATTGGTTT</canonical_amplicon>
		<polymorphic_amplicon>ACTTCCCGTATCGTATACTACTGCGCTACAATTGATGAAGAGNNNNNNNNNNCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTCACAGAAAATGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATATTTTGAAATCAACATGAGAAWTCGAGAGCCTACTGTCCAAATAGAGATTCTTCTTTTCTTGTTTGTTCATAGATTGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27928</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>87488</contig_pos>
        <strand>+</strand>
        <context>AGGAAATGAA[C/T]AAATATTGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGACGTAGGGGTCGAGAGTGACAATCGGAGAAAAGTTCTGAGGAAATGAA</left_flank>
        <right_flank>AAATATTGAGGAAGAGAGAAACCTTTAAATTGAGCTCACTCGGTTGTCCA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGCTCAGATCATGTCTATCCAAAAACGATCTGGATGCCAAACGAAAGTGTTCAAAGAGGATCATTAATGCACGGGCATGGAGATCCACTCTCTCCTTATTATCCTTCGAAGATAGAACTCTTTAAAGGAAAAACTATAAAGGAGGCTTATGACGATGGAACGCTCCCTTCCATCCCAGTACTTCCCGTATCGTATACTACTGCGCTACAATTGATGAAGAGNNNNNNNNNNCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTCACAGAAAATGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATATTTTGAAATCAACATGAGAAATCGAGAGCCTACTGTCCAAATAGAGATTCTTCTTTTCTTGTTTGTTCATAGATTGGTTTGTATCAAAAAACAAAGGAAACTAGACGTAGGGGTCGAGAGTGACAATCGGAGAAAAGTTCTGAGGAAATGAATAAATATTGAGGAAGAGAGAAACCTTTAAATTGAGCTCACTCGGTTGTCCAAATCATATCAATTTCAAATCTACTCGTTTTTCCGATATGGGGATCTCGGCTGAAGACAGTGGAAGGCGTTTGCTCAAATCGGAACATGGAACTTATATAAGGTTAGTTTATCTGGAACTTTGATCTTAATCCTATGTTTGCAGAGCCAATGCGCAGACGGTTGACTTGAAGAAGGGCAGTCCATGTGATTCGGAACATTGGTACATCGTGGATTTGGGATGCAAGGTAGCCACTTTTCCTTTTTCAAATATCTTCCTTATTAATAAAACGCTAGAGGCGTCTGTCCGTCCTCGCGTCCGTCTGTGGACTTTTGAAAAAATTGAAAAATACATATATATTTACGTGACCCTTTTATTCAGAAAAAGTGAGAAACGAAGCGACGAACATTTGAAAAAAATAGATTGAATCGCGTCGAAGGTGCACCAGCTTGCTGGTAAAAATGCATTTTAG</canonical>
            <polymorphic>TAAGCTCAGATCATGTCTATCCAAAAACGATCTGGATGCCAAACGAAAGTGTTCAAAGAGGATCATTAATGCACGGGCATGGAGATCCACTCTCTCCTTATTATCCTTCGAAGATAGAACTCTTTAAAGGAAAAACTATAAAGGAGGCTTATGACGATGGAACGCTCCCTTCCATCCCAGTACTTCCCGTATCGTATACTACTGCGCTACAATTGATGAAGAGNNNNNNNNNNCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTCACAGAAAATGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATATTTTGAAATCAACATGAGAAATCGAGAGCCTACTGTCCAAATAGAGATTCTTCTTTTCTTGTTTGTTCATAGATTGGTTTGTATCAAAAAACAAAGGAAACTAGACGTAGGGGTCGAGAGTGACAATCGGAGAAAAGTTCTGAGGAAATGAAYAAATATTGAGGAAGAGAGAAACCTTTAAATTGAGCTCACTCGGTTGTCCAAATCATATCAATTTCAAATCTACTCGTTTTTCCGATATGGGGATCTCGGCTGAAGACAGTGGAAGGCGTTTGCTCAAATCGGAACATGGAACTTATATAAGGTTAGTTTATCTGGAACTTTGATCTTAATCCTATGTTTGCAGAGCCAATGCGCAGACGGTTGACTTGAAGAAGGGCAGTCCATGTGATTCGGAACATTGGTACATCGTGGATTTGGGATGCAAGGTAGCCACTTTTCCTTTTTCAAATATCTTCCTTATTAATAAAACGCTAGAGGCGTCTGTCCGTCCTCGCGTCCGTCTGTGGACTTTTGAAAAAATTGAAAAATACATATATATTTACGTGACCCTTTTATTCAGAAAAAGTGAGAAACGAAGCGACGAACATTTGAAAAAAATAGATTGAATCGCGTCGAAGGTGCACCAGCTTGCTGGTAAAAATGCATTTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACAAAGGAAACTAGACGTA</pcr_primer_p1>
		<pcr_primer_p2>GGATTAAGATCAAAGTTCCAGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAACAAAGGAAACTAGACGTAGGGGTCGAGAGTGACAATCGGAGAAAAGTTCTGAGGAAATGAATAAATATTGAGGAAGAGAGAAACCTTTAAATTGAGCTCACTCGGTTGTCCAAATCATATCAATTTCAAATCTACTCGTTTTTCCGATATGGGGATCTCGGCTGAAGACAGTGGAAGGCGTTTGCTCAAATCGGAACATGGAACTTATATAAGGTTAGTTTATCTGGAACTTTGATCTTAATCC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACAAAGGAAACTAGACGTAGGGGTCGAGAGTGACAATCGGAGAAAAGTTCTGAGGAAATGAAYAAATATTGAGGAAGAGAGAAACCTTTAAATTGAGCTCACTCGGTTGTCCAAATCATATCAATTTCAAATCTACTCGTTTTTCCGATATGGGGATCTCGGCTGAAGACAGTGGAAGGCGTTTGCTCAAATCGGAACATGGAACTTATATAAGGTTAGTTTATCTGGAACTTTGATCTTAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27929</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>87560</contig_pos>
        <strand>+</strand>
        <context>TTTCAAATCT[A/G]CTCGTTTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTTTAAATTGAGCTCACTCGGTTGTCCAAATCATATCAATTTCAAATCT</left_flank>
        <right_flank>CTCGTTTTTCCGATATGGGGATCTCGGCTGAAGACAGTGGAAGGCGTTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGGGCATGGAGATCCACTCTCTCCTTATTATCCTTCGAAGATAGAACTCTTTAAAGGAAAAACTATAAAGGAGGCTTATGACGATGGAACGCTCCCTTCCATCCCAGTACTTCCCGTATCGTATACTACTGCGCTACAATTGATGAAGAGNNNNNNNNNNCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTCACAGAAAATGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATATTTTGAAATCAACATGAGAAATCGAGAGCCTACTGTCCAAATAGAGATTCTTCTTTTCTTGTTTGTTCATAGATTGGTTTGTATCAAAAAACAAAGGAAACTAGACGTAGGGGTCGAGAGTGACAATCGGAGAAAAGTTCTGAGGAAATGAATAAATATTGAGGAAGAGAGAAACCTTTAAATTGAGCTCACTCGGTTGTCCAAATCATATCAATTTCAAATCTACTCGTTTTTCCGATATGGGGATCTCGGCTGAAGACAGTGGAAGGCGTTTGCTCAAATCGGAACATGGAACTTATATAAGGTTAGTTTATCTGGAACTTTGATCTTAATCCTATGTTTGCAGAGCCAATGCGCAGACGGTTGACTTGAAGAAGGGCAGTCCATGTGATTCGGAACATTGGTACATCGTGGATTTGGGATGCAAGGTAGCCACTTTTCCTTTTTCAAATATCTTCCTTATTAATAAAACGCTAGAGGCGTCTGTCCGTCCTCGCGTCCGTCTGTGGACTTTTGAAAAAATTGAAAAATACATATATATTTACGTGACCCTTTTATTCAGAAAAAGTGAGAAACGAAGCGACGAACATTTGAAAAAAATAGATTGAATCGCGTCGAAGGTGCACCAGCTTGCTGGTAAAAATGCATTTTAGGTTTCAATCAAAACGTTCAACTCACCGGAACGTTTTCTGCAAGCTGTGCCTTCTGGAGAAGTGGATTTGGTA</canonical>
            <polymorphic>ACGGGCATGGAGATCCACTCTCTCCTTATTATCCTTCGAAGATAGAACTCTTTAAAGGAAAAACTATAAAGGAGGCTTATGACGATGGAACGCTCCCTTCCATCCCAGTACTTCCCGTATCGTATACTACTGCGCTACAATTGATGAAGAGNNNNNNNNNNCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTCACAGAAAATGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATATTTTGAAATCAACATGAGAAATCGAGAGCCTACTGTCCAAATAGAGATTCTTCTTTTCTTGTTTGTTCATAGATTGGTTTGTATCAAAAAACAAAGGAAACTAGACGTAGGGGTCGAGAGTGACAATCGGAGAAAAGTTCTGAGGAAATGAATAAATATTGAGGAAGAGAGAAACCTTTAAATTGAGCTCACTCGGTTGTCCAAATCATATCAATTTCAAATCTRCTCGTTTTTCCGATATGGGGATCTCGGCTGAAGACAGTGGAAGGCGTTTGCTCAAATCGGAACATGGAACTTATATAAGGTTAGTTTATCTGGAACTTTGATCTTAATCCTATGTTTGCAGAGCCAATGCGCAGACGGTTGACTTGAAGAAGGGCAGTCCATGTGATTCGGAACATTGGTACATCGTGGATTTGGGATGCAAGGTAGCCACTTTTCCTTTTTCAAATATCTTCCTTATTAATAAAACGCTAGAGGCGTCTGTCCGTCCTCGCGTCCGTCTGTGGACTTTTGAAAAAATTGAAAAATACATATATATTTACGTGACCCTTTTATTCAGAAAAAGTGAGAAACGAAGCGACGAACATTTGAAAAAAATAGATTGAATCGCGTCGAAGGTGCACCAGCTTGCTGGTAAAAATGCATTTTAGGTTTCAATCAAAACGTTCAACTCACCGGAACGTTTTCTGCAAGCTGTGCCTTCTGGAGAAGTGGATTTGGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACAAAGGAAACTAGACGTA</pcr_primer_p1>
		<pcr_primer_p2>GGATTAAGATCAAAGTTCCAGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAACAAAGGAAACTAGACGTAGGGGTCGAGAGTGACAATCGGAGAAAAGTTCTGAGGAAATGAATAAATATTGAGGAAGAGAGAAACCTTTAAATTGAGCTCACTCGGTTGTCCAAATCATATCAATTTCAAATCTACTCGTTTTTCCGATATGGGGATCTCGGCTGAAGACAGTGGAAGGCGTTTGCTCAAATCGGAACATGGAACTTATATAAGGTTAGTTTATCTGGAACTTTGATCTTAATCC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACAAAGGAAACTAGACGTAGGGGTCGAGAGTGACAATCGGAGAAAAGTTCTGAGGAAATGAATAAATATTGAGGAAGAGAGAAACCTTTAAATTGAGCTCACTCGGTTGTCCAAATCATATCAATTTCAAATCTRCTCGTTTTTCCGATATGGGGATCTCGGCTGAAGACAGTGGAAGGCGTTTGCTCAAATCGGAACATGGAACTTATATAAGGTTAGTTTATCTGGAACTTTGATCTTAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27930</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>87594</contig_pos>
        <strand>+</strand>
        <context>TCGGCTGAAG[A/T]CAGTGGAAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATCAATTTCAAATCTACTCGTTTTTCCGATATGGGGATCTCGGCTGAAG</left_flank>
        <right_flank>CAGTGGAAGGCGTTTGCTCAAATCGGAACATGGAACTTATATAAGGTTAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGAAGATAGAACTCTTTAAAGGAAAAACTATAAAGGAGGCTTATGACGATGGAACGCTCCCTTCCATCCCAGTACTTCCCGTATCGTATACTACTGCGCTACAATTGATGAAGAGNNNNNNNNNNCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTCACAGAAAATGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATATTTTGAAATCAACATGAGAAATCGAGAGCCTACTGTCCAAATAGAGATTCTTCTTTTCTTGTTTGTTCATAGATTGGTTTGTATCAAAAAACAAAGGAAACTAGACGTAGGGGTCGAGAGTGACAATCGGAGAAAAGTTCTGAGGAAATGAATAAATATTGAGGAAGAGAGAAACCTTTAAATTGAGCTCACTCGGTTGTCCAAATCATATCAATTTCAAATCTACTCGTTTTTCCGATATGGGGATCTCGGCTGAAGACAGTGGAAGGCGTTTGCTCAAATCGGAACATGGAACTTATATAAGGTTAGTTTATCTGGAACTTTGATCTTAATCCTATGTTTGCAGAGCCAATGCGCAGACGGTTGACTTGAAGAAGGGCAGTCCATGTGATTCGGAACATTGGTACATCGTGGATTTGGGATGCAAGGTAGCCACTTTTCCTTTTTCAAATATCTTCCTTATTAATAAAACGCTAGAGGCGTCTGTCCGTCCTCGCGTCCGTCTGTGGACTTTTGAAAAAATTGAAAAATACATATATATTTACGTGACCCTTTTATTCAGAAAAAGTGAGAAACGAAGCGACGAACATTTGAAAAAAATAGATTGAATCGCGTCGAAGGTGCACCAGCTTGCTGGTAAAAATGCATTTTAGGTTTCAATCAAAACGTTCAACTCACCGGAACGTTTTCTGCAAGCTGTGCCTTCTGGAGAAGTGGATTTGGTAGAAACGGATCCTAACCAATGTCCTGCGGTGATGT</canonical>
            <polymorphic>TTCGAAGATAGAACTCTTTAAAGGAAAAACTATAAAGGAGGCTTATGACGATGGAACGCTCCCTTCCATCCCAGTACTTCCCGTATCGTATACTACTGCGCTACAATTGATGAAGAGNNNNNNNNNNCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTCACAGAAAATGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATATTTTGAAATCAACATGAGAAATCGAGAGCCTACTGTCCAAATAGAGATTCTTCTTTTCTTGTTTGTTCATAGATTGGTTTGTATCAAAAAACAAAGGAAACTAGACGTAGGGGTCGAGAGTGACAATCGGAGAAAAGTTCTGAGGAAATGAATAAATATTGAGGAAGAGAGAAACCTTTAAATTGAGCTCACTCGGTTGTCCAAATCATATCAATTTCAAATCTACTCGTTTTTCCGATATGGGGATCTCGGCTGAAGWCAGTGGAAGGCGTTTGCTCAAATCGGAACATGGAACTTATATAAGGTTAGTTTATCTGGAACTTTGATCTTAATCCTATGTTTGCAGAGCCAATGCGCAGACGGTTGACTTGAAGAAGGGCAGTCCATGTGATTCGGAACATTGGTACATCGTGGATTTGGGATGCAAGGTAGCCACTTTTCCTTTTTCAAATATCTTCCTTATTAATAAAACGCTAGAGGCGTCTGTCCGTCCTCGCGTCCGTCTGTGGACTTTTGAAAAAATTGAAAAATACATATATATTTACGTGACCCTTTTATTCAGAAAAAGTGAGAAACGAAGCGACGAACATTTGAAAAAAATAGATTGAATCGCGTCGAAGGTGCACCAGCTTGCTGGTAAAAATGCATTTTAGGTTTCAATCAAAACGTTCAACTCACCGGAACGTTTTCTGCAAGCTGTGCCTTCTGGAGAAGTGGATTTGGTAGAAACGGATCCTAACCAATGTCCTGCGGTGATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>397 235 227 101 40</canonical_bands>
                <polymorphic_bands>397 328 235 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACAAAGGAAACTAGACGTA</pcr_primer_p1>
		<pcr_primer_p2>GGATTAAGATCAAAGTTCCAGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAACAAAGGAAACTAGACGTAGGGGTCGAGAGTGACAATCGGAGAAAAGTTCTGAGGAAATGAATAAATATTGAGGAAGAGAGAAACCTTTAAATTGAGCTCACTCGGTTGTCCAAATCATATCAATTTCAAATCTACTCGTTTTTCCGATATGGGGATCTCGGCTGAAGACAGTGGAAGGCGTTTGCTCAAATCGGAACATGGAACTTATATAAGGTTAGTTTATCTGGAACTTTGATCTTAATCC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACAAAGGAAACTAGACGTAGGGGTCGAGAGTGACAATCGGAGAAAAGTTCTGAGGAAATGAATAAATATTGAGGAAGAGAGAAACCTTTAAATTGAGCTCACTCGGTTGTCCAAATCATATCAATTTCAAATCTACTCGTTTTTCCGATATGGGGATCTCGGCTGAAGWCAGTGGAAGGCGTTTGCTCAAATCGGAACATGGAACTTATATAAGGTTAGTTTATCTGGAACTTTGATCTTAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27931</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>87706</contig_pos>
        <strand>+</strand>
        <context>CGGTTGACTT[A/G]AAGAAGGGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTGATCTTAATCCTATGTTTGCAGAGCCAATGCGCAGACGGTTGACTT</left_flank>
        <right_flank>AAGAAGGGCAGTCCATGTGATTCGGAACATTGGTACATCGTGGATTTGGG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAGNNNNNNNNNNCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTCACAGAAAATGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATATTTTGAAATCAACATGAGAAATCGAGAGCCTACTGTCCAAATAGAGATTCTTCTTTTCTTGTTTGTTCATAGATTGGTTTGTATCAAAAAACAAAGGAAACTAGACGTAGGGGTCGAGAGTGACAATCGGAGAAAAGTTCTGAGGAAATGAATAAATATTGAGGAAGAGAGAAACCTTTAAATTGAGCTCACTCGGTTGTCCAAATCATATCAATTTCAAATCTACTCGTTTTTCCGATATGGGGATCTCGGCTGAAGACAGTGGAAGGCGTTTGCTCAAATCGGAACATGGAACTTATATAAGGTTAGTTTATCTGGAACTTTGATCTTAATCCTATGTTTGCAGAGCCAATGCGCAGACGGTTGACTTGAAGAAGGGCAGTCCATGTGATTCGGAACATTGGTACATCGTGGATTTGGGATGCAAGGTAGCCACTTTTCCTTTTTCAAATATCTTCCTTATTAATAAAACGCTAGAGGCGTCTGTCCGTCCTCGCGTCCGTCTGTGGACTTTTGAAAAAATTGAAAAATACATATATATTTACGTGACCCTTTTATTCAGAAAAAGTGAGAAACGAAGCGACGAACATTTGAAAAAAATAGATTGAATCGCGTCGAAGGTGCACCAGCTTGCTGGTAAAAATGCATTTTAGGTTTCAATCAAAACGTTCAACTCACCGGAACGTTTTCTGCAAGCTGTGCCTTCTGGAGAAGTGGATTTGGTAGAAACGGATCCTAACCAATGTCCTGCGGTGATGTGGCAACCATCCAAAAATTCGGATGGAACCTGGTCGTTCCTTAGTACCTATGGAACTTGGTTGAGGTAGGATTTCATATGTTTCTGTTGATTCTTCTTCCATTTCAGCGGTCT</canonical>
            <polymorphic>AAGAGNNNNNNNNNNCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTCACAGAAAATGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATATTTTGAAATCAACATGAGAAATCGAGAGCCTACTGTCCAAATAGAGATTCTTCTTTTCTTGTTTGTTCATAGATTGGTTTGTATCAAAAAACAAAGGAAACTAGACGTAGGGGTCGAGAGTGACAATCGGAGAAAAGTTCTGAGGAAATGAATAAATATTGAGGAAGAGAGAAACCTTTAAATTGAGCTCACTCGGTTGTCCAAATCATATCAATTTCAAATCTACTCGTTTTTCCGATATGGGGATCTCGGCTGAAGACAGTGGAAGGCGTTTGCTCAAATCGGAACATGGAACTTATATAAGGTTAGTTTATCTGGAACTTTGATCTTAATCCTATGTTTGCAGAGCCAATGCGCAGACGGTTGACTTRAAGAAGGGCAGTCCATGTGATTCGGAACATTGGTACATCGTGGATTTGGGATGCAAGGTAGCCACTTTTCCTTTTTCAAATATCTTCCTTATTAATAAAACGCTAGAGGCGTCTGTCCGTCCTCGCGTCCGTCTGTGGACTTTTGAAAAAATTGAAAAATACATATATATTTACGTGACCCTTTTATTCAGAAAAAGTGAGAAACGAAGCGACGAACATTTGAAAAAAATAGATTGAATCGCGTCGAAGGTGCACCAGCTTGCTGGTAAAAATGCATTTTAGGTTTCAATCAAAACGTTCAACTCACCGGAACGTTTTCTGCAAGCTGTGCCTTCTGGAGAAGTGGATTTGGTAGAAACGGATCCTAACCAATGTCCTGCGGTGATGTGGCAACCATCCAAAAATTCGGATGGAACCTGGTCGTTCCTTAGTACCTATGGAACTTGGTTGAGGTAGGATTTCATATGTTTCTGTTGATTCTTCTTCCATTTCAGCGGTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGGTTGTCCAAATCATATC</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGGAAAAGTGGCTACC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TCGGTTGTCCAAATCATATCAATTTCAAATCTACTCGTTTTTCCGATATGGGGATCTCGGCTGAAGACAGTGGAAGGCGTTTGCTCAAATCGGAACATGGAACTTATATAAGGTTAGTTTATCTGGAACTTTGATCTTAATCCTATGTTTGCAGAGCCAATGCGCAGACGGTTGACTTGAAGAAGGGCAGTCCATGTGATTCGGAACATTGGTACATCGTGGATTTGGGATGCAAGGTAGCCACTTTTCCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>TCGGTTGTCCAAATCATATCAATTTCAAATCTACTCGTTTTTCCGATATGGGGATCTCGGCTGAAGACAGTGGAAGGCGTTTGCTCAAATCGGAACATGGAACTTATATAAGGTTAGTTTATCTGGAACTTTGATCTTAATCCTATGTTTGCAGAGCCAATGCGCAGACGGTTGACTTRAAGAAGGGCAGTCCATGTGATTCGGAACATTGGTACATCGTGGATTTGGGATGCAAGGTAGCCACTTTTCCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27932</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>89664</contig_pos>
        <strand>+</strand>
        <context>GAACTCGTTT[C/T]GCTGCTTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTAGCTCTCCCGCTCGATTTTTCTTCCTTCGAAGGGTTAGGAACTCGTTT</left_flank>
        <right_flank>GCTGCTTCAATGGCGACGTGCTCCAAAGTGGGAACTGTTTCGACATGTCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATACTGTCCAAATCGATTCTCGAAACGTTCATTCCTAAAATGGAAGTTTTCAATTGAGGAAGATAGCTTTTGATCATAACAGATGCCAAATTTGTTGTATTTACTGGTAGAACCGTCTTATCCGCAAACATTCTAAAATAAAAACATATGTGACCAGACAACTTCAAACAACCTTACACTGCTAATTCTGCCCAATACTGCCCAATTGCTCTATGTACTGCAAGATCGTCGGTATCCATTAGGTGGATATTAGTGAAAGGTGTCTCGTACATGGTATGATACAATGGGTAAGTACTATACGCCGTGTAATTTTTGTATTTAAAATTTACGACAGGGACACCTGCAAAGTTCAGAAAGGGCGCATGGTCGGAGCCACCACCAGGAACACGGATCTTCGGATGACCCACTTCCTTGTCAGGAAAAACGTTCATCCAAGTATCGTAAACTGTAGCTCTCCCGCTCGATTTTTCTTCCTTCGAAGGGTTAGGAACTCGTTTTGCTGCTTCAATGGCGACGTGCTCCAAAGTGGGAACTGTTTCGACATGTCTGTAACTTTGACTCAAAACAGCAATTTAACAAAAACTTACAAACTGGAGTTTCCTTGAATACAATCCATGTTAATATAAACCACGGCCCGCTTTTGCAAAATATCCACAAACTCTTCGACAAATTCAGTGGAACCTATCAGACCGAATTCTTCTGCATCCCATGCATTGAACACAATAGTACGGGCTGAAATAGAGGAAAATTTCAAGCAAATATTCTCAACTAACCAGGCCTCCAATGAGTTTCATTGATCGTCTGCATCATTGCTCTTGCCACTTCCGCCAAAGCAGCTGTTCCAGAATTGGGATCCACTGATCCATACACCCATGCATCGAAATGATTCCCAAGCATAACATAGCGATCTGGCTCTTTGGAACCTCGGATGTATCCAATAACATTTTGAATCCGTCTATAAAACCCAAGTTGTTCACGAAGTCTCTGAATTTACCAGA</canonical>
            <polymorphic>GGATACTGTCCAAATCGATTCTCGAAACGTTCATTCCTAAAATGGAAGTTTTCAATTGAGGAAGATAGCTTTTGATCATAACAGATGCCAAATTTGTTGTATTTACTGGTAGAACCGTCTTATCCGCAAACATTCTAAAATAAAAACATATGTGACCAGACAACTTCAAACAACCTTACACTGCTAATTCTGCCCAATACTGCCCAATTGCTCTATGTACTGCAAGATCGTCGGTATCCATTAGGTGGATATTAGTGAAAGGTGTCTCGTACATGGTATGATACAATGGGTAAGTACTATACGCCGTGTAATTTTTGTATTTAAAATTTACGACAGGGACACCTGCAAAGTTCAGAAAGGGCGCATGGTCGGAGCCACCACCAGGAACACGGATCTTCGGATGACCCACTTCCTTGTCAGGAAAAACGTTCATCCAAGTATCGTAAACTGTAGCTCTCCCGCTCGATTTTTCTTCCTTCGAAGGGTTAGGAACTCGTTTYGCTGCTTCAATGGCGACGTGCTCCAAAGTGGGAACTGTTTCGACATGTCTGTAACTTTGACTCAAAACAGCAATTTAACAAAAACTTACAAACTGGAGTTTCCTTGAATACAATCCATGTTAATATAAACCACGGCCCGCTTTTGCAAAATATCCACAAACTCTTCGACAAATTCAGTGGAACCTATCAGACCGAATTCTTCTGCATCCCATGCATTGAACACAATAGTACGGGCTGAAATAGAGGAAAATTTCAAGCAAATATTCTCAACTAACCAGGCCTCCAATGAGTTTCATTGATCGTCTGCATCATTGCTCTTGCCACTTCCGCCAAAGCAGCTGTTCCAGAATTGGGATCCACTGATCCATACACCCATGCATCGAAATGATTCCCAAGCATAACATAGCGATCTGGCTCTTTGGAACCTCGGATGTATCCAATAACATTTTGAATCCGTCTATAAAACCCAAGTTGTTCACGAAGTCTCTGAATTTACCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCATCCAAGTATCGTAAACTG</pcr_primer_p1>
		<pcr_primer_p2>CTGAATTTGTCGAAGAGTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTCATCCAAGTATCGTAAACTGTAGCTCTCCCGCTCGATTTTTCTTCCTTCGAAGGGTTAGGAACTCGTTTTGCTGCTTCAATGGCGACGTGCTCCAAAGTGGGAACTGTTTCGACATGTCTGTAACTTTGACTCAAAACAGCAATTTAACAAAAACTTACAAACTGGAGTTTCCTTGAATACAATCCATGTTAATATAAACCACGGCCCGCTTTTGCAAAATATCCACAAACTCTTCGACAAATTCAG</canonical_amplicon>
		<polymorphic_amplicon>GTTCATCCAAGTATCGTAAACTGTAGCTCTCCCGCTCGATTTTTCTTCCTTCGAAGGGTTAGGAACTCGTTTYGCTGCTTCAATGGCGACGTGCTCCAAAGTGGGAACTGTTTCGACATGTCTGTAACTTTGACTCAAAACAGCAATTTAACAAAAACTTACAAACTGGAGTTTCCTTGAATACAATCCATGTTAATATAAACCACGGCCCGCTTTTGCAAAATATCCACAAACTCTTCGACAAATTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27933</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>104592</contig_pos>
        <strand></strand>
        <context>TTTCATTTTT[G/T]AACATTTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTCAGAGATTTTTTTCCCAAAAATCACGATTTTTCAAATTTCATTTTT</left_flank>
        <right_flank>AACATTTTTGTCTAGTTTCTCAATTTTTCAGGGTCTGCCATTTGAACTAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGTCCAACTGGAACATTCGGTGGTCATGTATATGTACGTGGATTTTTTCCTCAAACGTAAGTAACCCCCTCGTTGACCTATATTTTGATCTACTTGAGTAAAATGAAACTTTTTTTTTTGAAAAATGGTAGGAAAAACTCTGTTTATTTGTTTTGTGGAGGGTAGTAGGAAGACGAAATGTGGAGGAAGTATAATTTTCCAAGGACAGATGTGTTCTATTTTCTCTCTTTGGATTATATAACGGGTGGTGTGTGGAAATAAAGGGAAAATGAGGGATTTGAATAGAGGATGATGATGACGATGGAAACAGGAACGGACAACAAGAGACATTTTTGAATTCCAAGGAAATCTGGACATTGGGATAGACATACAAATTCCGACTTTTTGAATTTCTGAACCCAGAAATCCCAGACTTTGAAATTTTGAGGCTTTATGGAATTTCAACTTTTTTCAGAGATTTTTTTCCCAAAAATCACGATTTTTCAAATTTCATTTTTGAACATTTTTGTCTAGTTTCTCAATTTTTCAGGGTCTGCCATTTGAACTACTGTACTCGATTGACGAATCAGCCAATTGTCATGGATCTCCCGTTTCGAGGACCCTGTAACGTTAGGAGAAGACGGAATGTGAGTTTTTTTCAAATACTTCTGTGTGACCGGATGTCCAGATGTCTCCGAGAATTTTAGAATTCGAAATCATTTAAATTATTAGATTCTAGGAAGTTTGAGCTCCAAGAAATATTAAGCATATCAGAATTCGAAAATTTTAAAATTTCAAAATCTAAAAAAAACAAAATTTTAAATTTCGATTTTTAAAGAAACTGGATTTTTGAGATTCTGAAAATTTCACATTCTTCTGAAATATTGAAAATTTAATGAAAATAACTTGAGAATTTTAAAAGTTTCAAATTTAAGAATTTAAGAATTTCAGAATCTTAAAATCTCAGAATCTCGAAACCATAAAATTTCAGAATTTCAGAATTTCAGAATCTCAGAACC</canonical>
            <polymorphic>TCAGTCCAACTGGAACATTCGGTGGTCATGTATATGTACGTGGATTTTTTCCTCAAACGTAAGTAACCCCCTCGTTGACCTATATTTTGATCTACTTGAGTAAAATGAAACTTTTTTTTTTGAAAAATGGTAGGAAAAACTCTGTTTATTTGTTTTGTGGAGGGTAGTAGGAAGACGAAATGTGGAGGAAGTATAATTTTCCAAGGACAGATGTGTTCTATTTTCTCTCTTTGGATTATATAACGGGTGGTGTGTGGAAATAAAGGGAAAATGAGGGATTTGAATAGAGGATGATGATGACGATGGAAACAGGAACGGACAACAAGAGACATTTTTGAATTCCAAGGAAATCTGGACATTGGGATAGACATACAAATTCCGACTTTTTGAATTTCTGAACCCAGAAATCCCAGACTTTGAAATTTTGAGGCTTTATGGAATTTCAACTTTTTTCAGAGATTTTTTTCCCAAAAATCACGATTTTTCAAATTTCATTTTTKAACATTTTTGTCTAGTTTCTCAATTTTTCAGGGTCTGCCATTTGAACTACTGTACTCGATTGACGAATCAGCCAATTGTCATGGATCTCCCGTTTCGAGGACCCTGTAACGTTAGGAGAAGACGGAATGTGAGTTTTTTTCAAATACTTCTGTGTGACCGGATGTCCAGATGTCTCCGAGAATTTTAGAATTCGAAATCATTTAAATTATTAGATTCTAGGAAGTTTGAGCTCCAAGAAATATTAAGCATATCAGAATTCGAAAATTTTAAAATTTCAAAATCTAAAAAAAACAAAATTTTAAATTTCGATTTTTAAAGAAACTGGATTTTTGAGATTCTGAAAATTTCACATTCTTCTGAAATATTGAAAATTTAATGAAAATAACTTGAGAATTTTAAAAGTTTCAAATTTAAGAATTTAAGAATTTCAGAATCTTAAAATCTCAGAATCTCGAAACCATAAAATTTCAGAATTTCAGAATTTCAGAATCTCAGAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAACAAGAGACATTTTTGAAT</pcr_primer_p1>
		<pcr_primer_p2>TTCGTCAATCGAGTACAGTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACAACAAGAGACATTTTTGAATTCCAAGGAAATCTGGACATTGGGATAGACATACAAATTCCGACTTTTTGAATTTCTGAACCCAGAAATCCCAGACTTTGAAATTTTGAGGCTTTATGGAATTTCAACTTTTTTCAGAGATTTTTTTCCCAAAAATCACGATTTTTCAAATTTCATTTTTGAACATTTTTGTCTAGTTTCTCAATTTTTCAGGGTCTGCCATTTGAACTACTGTACTCGATTGACGAA</canonical_amplicon>
		<polymorphic_amplicon>GACAACAAGAGACATTTTTGAATTCCAAGGAAATCTGGACATTGGGATAGACATACAAATTCCGACTTTTTGAATTTCTGAACCCAGAAATCCCAGACTTTGAAATTTTGAGGCTTTATGGAATTTCAACTTTTTTCAGAGATTTTTTTCCCAAAAATCACGATTTTTCAAATTTCATTTTTKAACATTTTTGTCTAGTTTCTCAATTTTTCAGGGTCTGCCATTTGAACTACTGTACTCGATTGACGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27934</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>104798</contig_pos>
        <strand></strand>
        <context>AATCATTTAA[A/T]TTATTAGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACCGGATGTCCAGATGTCTCCGAGAATTTTAGAATTCGAAATCATTTAA</left_flank>
        <right_flank>TTATTAGATTCTAGGAAGTTTGAGCTCCAAGAAATATTAAGCATATCAGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGATGTGTTCTATTTTCTCTCTTTGGATTATATAACGGGTGGTGTGTGGAAATAAAGGGAAAATGAGGGATTTGAATAGAGGATGATGATGACGATGGAAACAGGAACGGACAACAAGAGACATTTTTGAATTCCAAGGAAATCTGGACATTGGGATAGACATACAAATTCCGACTTTTTGAATTTCTGAACCCAGAAATCCCAGACTTTGAAATTTTGAGGCTTTATGGAATTTCAACTTTTTTCAGAGATTTTTTTCCCAAAAATCACGATTTTTCAAATTTCATTTTTGAACATTTTTGTCTAGTTTCTCAATTTTTCAGGGTCTGCCATTTGAACTACTGTACTCGATTGACGAATCAGCCAATTGTCATGGATCTCCCGTTTCGAGGACCCTGTAACGTTAGGAGAAGACGGAATGTGAGTTTTTTTCAAATACTTCTGTGTGACCGGATGTCCAGATGTCTCCGAGAATTTTAGAATTCGAAATCATTTAAATTATTAGATTCTAGGAAGTTTGAGCTCCAAGAAATATTAAGCATATCAGAATTCGAAAATTTTAAAATTTCAAAATCTAAAAAAAACAAAATTTTAAATTTCGATTTTTAAAGAAACTGGATTTTTGAGATTCTGAAAATTTCACATTCTTCTGAAATATTGAAAATTTAATGAAAATAACTTGAGAATTTTAAAAGTTTCAAATTTAAGAATTTAAGAATTTCAGAATCTTAAAATCTCAGAATCTCGAAACCATAAAATTTCAGAATTTCAGAATTTCAGAATCTCAGAACCTCAGAATCTCAAAATCTCAAAATCTCAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAAATTCAGAATCTCAGAATCTCAGAATCTTAGAATCTCAAAATCTCAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAA</canonical>
            <polymorphic>ACAGATGTGTTCTATTTTCTCTCTTTGGATTATATAACGGGTGGTGTGTGGAAATAAAGGGAAAATGAGGGATTTGAATAGAGGATGATGATGACGATGGAAACAGGAACGGACAACAAGAGACATTTTTGAATTCCAAGGAAATCTGGACATTGGGATAGACATACAAATTCCGACTTTTTGAATTTCTGAACCCAGAAATCCCAGACTTTGAAATTTTGAGGCTTTATGGAATTTCAACTTTTTTCAGAGATTTTTTTCCCAAAAATCACGATTTTTCAAATTTCATTTTTGAACATTTTTGTCTAGTTTCTCAATTTTTCAGGGTCTGCCATTTGAACTACTGTACTCGATTGACGAATCAGCCAATTGTCATGGATCTCCCGTTTCGAGGACCCTGTAACGTTAGGAGAAGACGGAATGTGAGTTTTTTTCAAATACTTCTGTGTGACCGGATGTCCAGATGTCTCCGAGAATTTTAGAATTCGAAATCATTTAAWTTATTAGATTCTAGGAAGTTTGAGCTCCAAGAAATATTAAGCATATCAGAATTCGAAAATTTTAAAATTTCAAAATCTAAAAAAAACAAAATTTTAAATTTCGATTTTTAAAGAAACTGGATTTTTGAGATTCTGAAAATTTCACATTCTTCTGAAATATTGAAAATTTAATGAAAATAACTTGAGAATTTTAAAAGTTTCAAATTTAAGAATTTAAGAATTTCAGAATCTTAAAATCTCAGAATCTCGAAACCATAAAATTTCAGAATTTCAGAATTTCAGAATCTCAGAACCTCAGAATCTCAAAATCTCAAAATCTCAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAAATTCAGAATCTCAGAATCTCAGAATCTTAGAATCTCAAAATCTCAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>497 308 83 66 32 14</canonical_bands>
                <polymorphic_bands>563 308 83 32 14</polymorphic_bands>
            </assay>
            <assay>
                <site>ATTTAAAT</site>
                <isoschizomers>
                    <enzyme>SmiI</enzyme>
                    <enzyme>SwaI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>131 121 107 105 52 51 49 41 40 37 34 31 27 24 22 18 16 16 15 8 8 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>131 121 107 105 67 52 49 41 40 37 34 31 27 24 22 18 16 15 8 8 8 8 8 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCCTGTAACGTTAGGAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCAGAATCTCAAAAATCCAGT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ACCCTGTAACGTTAGGAGAAGACGGAATGTGAGTTTTTTTCAAATACTTCTGTGTGACCGGATGTCCAGATGTCTCCGAGAATTTTAGAATTCGAAATCATTTAAATTATTAGATTCTAGGAAGTTTGAGCTCCAAGAAATATTAAGCATATCAGAATTCGAAAATTTTAAAATTTCAAAATCTAAAAAAAACAAAATTTTAAATTTCGATTTTTAAAGAAACTGGATTTTTGAGATTCTGAA</canonical_amplicon>
		<polymorphic_amplicon>ACCCTGTAACGTTAGGAGAAGACGGAATGTGAGTTTTTTTCAAATACTTCTGTGTGACCGGATGTCCAGATGTCTCCGAGAATTTTAGAATTCGAAATCATTTAAWTTATTAGATTCTAGGAAGTTTGAGCTCCAAGAAATATTAAGCATATCAGAATTCGAAAATTTTAAAATTTCAAAATCTAAAAAAAACAAAATTTTAAATTTCGATTTTTAAAGAAACTGGATTTTTGAGATTCTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27935</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>104843</contig_pos>
        <strand></strand>
        <context>TATTAAGCAT[A/C]TCAGAATTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTAAATTATTAGATTCTAGGAAGTTTGAGCTCCAAGAAATATTAAGCAT</left_flank>
        <right_flank>TCAGAATTCGAAAATTTTAAAATTTCAAAATCTAAAAAAAACAAAATTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTGGAAATAAAGGGAAAATGAGGGATTTGAATAGAGGATGATGATGACGATGGAAACAGGAACGGACAACAAGAGACATTTTTGAATTCCAAGGAAATCTGGACATTGGGATAGACATACAAATTCCGACTTTTTGAATTTCTGAACCCAGAAATCCCAGACTTTGAAATTTTGAGGCTTTATGGAATTTCAACTTTTTTCAGAGATTTTTTTCCCAAAAATCACGATTTTTCAAATTTCATTTTTGAACATTTTTGTCTAGTTTCTCAATTTTTCAGGGTCTGCCATTTGAACTACTGTACTCGATTGACGAATCAGCCAATTGTCATGGATCTCCCGTTTCGAGGACCCTGTAACGTTAGGAGAAGACGGAATGTGAGTTTTTTTCAAATACTTCTGTGTGACCGGATGTCCAGATGTCTCCGAGAATTTTAGAATTCGAAATCATTTAAATTATTAGATTCTAGGAAGTTTGAGCTCCAAGAAATATTAAGCATATCAGAATTCGAAAATTTTAAAATTTCAAAATCTAAAAAAAACAAAATTTTAAATTTCGATTTTTAAAGAAACTGGATTTTTGAGATTCTGAAAATTTCACATTCTTCTGAAATATTGAAAATTTAATGAAAATAACTTGAGAATTTTAAAAGTTTCAAATTTAAGAATTTAAGAATTTCAGAATCTTAAAATCTCAGAATCTCGAAACCATAAAATTTCAGAATTTCAGAATTTCAGAATCTCAGAACCTCAGAATCTCAAAATCTCAAAATCTCAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAAATTCAGAATCTCAGAATCTCAGAATCTTAGAATCTCAAAATCTCAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAAATTCAGAATCTCAGAATCTCAGAATCTTAGAATCTCA</canonical>
            <polymorphic>GTGTGGAAATAAAGGGAAAATGAGGGATTTGAATAGAGGATGATGATGACGATGGAAACAGGAACGGACAACAAGAGACATTTTTGAATTCCAAGGAAATCTGGACATTGGGATAGACATACAAATTCCGACTTTTTGAATTTCTGAACCCAGAAATCCCAGACTTTGAAATTTTGAGGCTTTATGGAATTTCAACTTTTTTCAGAGATTTTTTTCCCAAAAATCACGATTTTTCAAATTTCATTTTTGAACATTTTTGTCTAGTTTCTCAATTTTTCAGGGTCTGCCATTTGAACTACTGTACTCGATTGACGAATCAGCCAATTGTCATGGATCTCCCGTTTCGAGGACCCTGTAACGTTAGGAGAAGACGGAATGTGAGTTTTTTTCAAATACTTCTGTGTGACCGGATGTCCAGATGTCTCCGAGAATTTTAGAATTCGAAATCATTTAAATTATTAGATTCTAGGAAGTTTGAGCTCCAAGAAATATTAAGCATMTCAGAATTCGAAAATTTTAAAATTTCAAAATCTAAAAAAAACAAAATTTTAAATTTCGATTTTTAAAGAAACTGGATTTTTGAGATTCTGAAAATTTCACATTCTTCTGAAATATTGAAAATTTAATGAAAATAACTTGAGAATTTTAAAAGTTTCAAATTTAAGAATTTAAGAATTTCAGAATCTTAAAATCTCAGAATCTCGAAACCATAAAATTTCAGAATTTCAGAATTTCAGAATCTCAGAACCTCAGAATCTCAAAATCTCAAAATCTCAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAAATTCAGAATCTCAGAATCTCAGAATCTTAGAATCTCAAAATCTCAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAAATTCAGAATCTCAGAATCTCAGAATCTTAGAATCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCCTGTAACGTTAGGAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCAGAATCTCAAAAATCCAGT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ACCCTGTAACGTTAGGAGAAGACGGAATGTGAGTTTTTTTCAAATACTTCTGTGTGACCGGATGTCCAGATGTCTCCGAGAATTTTAGAATTCGAAATCATTTAAATTATTAGATTCTAGGAAGTTTGAGCTCCAAGAAATATTAAGCATATCAGAATTCGAAAATTTTAAAATTTCAAAATCTAAAAAAAACAAAATTTTAAATTTCGATTTTTAAAGAAACTGGATTTTTGAGATTCTGAA</canonical_amplicon>
		<polymorphic_amplicon>ACCCTGTAACGTTAGGAGAAGACGGAATGTGAGTTTTTTTCAAATACTTCTGTGTGACCGGATGTCCAGATGTCTCCGAGAATTTTAGAATTCGAAATCATTTAAATTATTAGATTCTAGGAAGTTTGAGCTCCAAGAAATATTAAGCATMTCAGAATTCGAAAATTTTAAAATTTCAAAATCTAAAAAAAACAAAATTTTAAATTTCGATTTTTAAAGAAACTGGATTTTTGAGATTCTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27936</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>106427</contig_pos>
        <strand></strand>
        <context>ACTTGTGATA[G/C]TGGTAAAGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GAAATTTGCAAATGTTGGAGATATTGTAGTACATAAATGGACTTGTGATA</left_flank>
        <right_flank>TGGTAAAGACCTTGAAATTTCGCTCTTTTCGGAAGGAAAAAATTTTCAGA</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGGATAAGCCCATAAAAGTGGGGTTCAGTGAATGCTTTATTTTATGCAAAATAATTGAAAAAATCAGAAGAGTGGCCGAGAGAGAGTTTTCTATTCCCCGGGCCAAAATGCGGTCGATTTTTTTTTCGAAATTCCAGTCTGAAGTTTTGAAATTCCAGGTGACGCCTCCATCAATTTCCTATGACGTCACCGTAATCATTCAACATCACCCAATGTTTATCACTTCTTTTGATAAAGCATACCGATTGAATTGTATCTACCGGCAACAAGAATCAGTGTTACAACAAAGGATTAATGTGTCGTAAGTTTATCAGTAAATCTCATATGCTTCATCAGTTTAGCGTATATGCTAAAATTCCAGAGACATTCCTTCCACATCTCTCCAAAGTAAAAACCCGCCTAGATGTCGGTATGATGTGTTGTCTGGCTCGTTGAATGGTCCAGCTGTGAAATTTGCAAATGTTGGAGATATTGTAGTACATAAATGGACTTGTGATAGTGGTAAAGACCTTGAAATTTCGCTCTTTTCGGAAGGAAAAAATTTTCAGACCGCTACGGATTTGTTGTCCATTCTTGTGCGGTTCGAGATGAATCTGGAAAGGATTTTCAGTTTATTGATGAGAGAGGGTAAGTCCATAGAATTCCAATTTTGATTCAATTTTATCTTGGTTCCTGTAGAAGATATCAAAAAGTGGTTAACTAACAATTAGTTGCTGATTTCATGATAAACATTTTGTCAATTGACCTCTTTTAGATATCTTTTACAGGAAGCGAGATAGAAGGGGTCAAAGGGTCGGAGCCCCTGACGCTGTCGGCTCTGCGACAGTGTAGCTCAGCCGGTAAAAGCGCGGAACTAACAGGTCCAAGAAGAGATTTTAAAAATGTGTTAGGAAGAACTTCAAGAGTGCAAAAAAAAACAAATATCCCGCTATCAAAAACCTGTTCCCAAGACAAGATTTCTAACTTTTACCTCACATCTCCGAAGACTTCCAGGCTGCG</canonical>
            <polymorphic>AGGGATAAGCCCATAAAAGTGGGGTTCAGTGAATGCTTTATTTTATGCAAAATAATTGAAAAAATCAGAAGAGTGGCCGAGAGAGAGTTTTCTATTCCCCGGGCCAAAATGCGGTCGATTTTTTTTTCGAAATTCCAGTCTGAAGTTTTGAAATTCCAGGTGACGCCTCCATCAATTTCCTATGACGTCACCGTAATCATTCAACATCACCCAATGTTTATCACTTCTTTTGATAAAGCATACCGATTGAATTGTATCTACCGGCAACAAGAATCAGTGTTACAACAAAGGATTAATGTGTCGTAAGTTTATCAGTAAATCTCATATGCTTCATCAGTTTAGCGTATATGCTAAAATTCCAGAGACATTCCTTCCACATCTCTCCAAAGTAAAAACCCGCCTAGATGTCGGTATGATGTGTTGTCTGGCTCGTTGAATGGTCCAGCTGTGAAATTTGCAAATGTTGGAGATATTGTAGTACATAAATGGACTTGTGATASTGGTAAAGACCTTGAAATTTCGCTCTTTTCGGAAGGAAAAAATTTTCAGACCGCTACGGATTTGTTGTCCATTCTTGTGCGGTTCGAGATGAATCTGGAAAGGATTTTCAGTTTATTGATGAGAGAGGGTAAGTCCATAGAATTCCAATTTTGATTCAATTTTATCTTGGTTCCTGTAGAAGATATCAAAAAGTGGTTAACTAACAATTAGTTGCTGATTTCATGATAAACATTTTGTCAATTGACCTCTTTTAGATATCTTTTACAGGAAGCGAGATAGAAGGGGTCAAAGGGTCGGAGCCCCTGACGCTGTCGGCTCTGCGACAGTGTAGCTCAGCCGGTAAAAGCGCGGAACTAACAGGTCCAAGAAGAGATTTTAAAAATGTGTTAGGAAGAACTTCAAGAGTGCAAAAAAAAACAAATATCCCGCTATCAAAAACCTGTTCCCAAGACAAGATTTCTAACTTTTACCTCACATCTCCGAAGACTTCCAGGCTGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>134 116 87 77 76 67 58 56 46 44 44 30 28 25 21 21 21 19 14 10 6</canonical_bands>
                <polymorphic_bands>134 116 87 83 76 67 58 56 46 44 44 30 28 25 21 21 21 19 14 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACATCTCTCCAAAGTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTCATCAATAAACTGAAAATCCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCACATCTCTCCAAAGTAAAAACCCGCCTAGATGTCGGTATGATGTGTTGTCTGGCTCGTTGAATGGTCCAGCTGTGAAATTTGCAAATGTTGGAGATATTGTAGTACATAAATGGACTTGTGATAGTGGTAAAGACCTTGAAATTTCGCTCTTTTCGGAAGGAAAAAATTTTCAGACCGCTACGGATTTGTTGTCCATTCTTGTGCGGTTCGAGATGAATCTGGAAAGGATTTTCAGTTTATTGATGAG</canonical_amplicon>
		<polymorphic_amplicon>CCACATCTCTCCAAAGTAAAAACCCGCCTAGATGTCGGTATGATGTGTTGTCTGGCTCGTTGAATGGTCCAGCTGTGAAATTTGCAAATGTTGGAGATATTGTAGTACATAAATGGACTTGTGATASTGGTAAAGACCTTGAAATTTCGCTCTTTTCGGAAGGAAAAAATTTTCAGACCGCTACGGATTTGTTGTCCATTCTTGTGCGGTTCGAGATGAATCTGGAAAGGATTTTCAGTTTATTGATGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27937</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>106582</contig_pos>
        <strand></strand>
        <context>ccaattttga[T/G]tcaattttat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTTTCAGTTTATTGATGAGAGAGGGTAAGTCCATAGAATTCCAATTTTGA</left_flank>
        <right_flank>TCAATTTTATCTTGGTTCCTGTAGAAGATATCAAAAAGTGGTTAACTAAC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGGTGACGCCTCCATCAATTTCCTATGACGTCACCGTAATCATTCAACATCACCCAATGTTTATCACTTCTTTTGATAAAGCATACCGATTGAATTGTATCTACCGGCAACAAGAATCAGTGTTACAACAAAGGATTAATGTGTCGTAAGTTTATCAGTAAATCTCATATGCTTCATCAGTTTAGCGTATATGCTAAAATTCCAGAGACATTCCTTCCACATCTCTCCAAAGTAAAAACCCGCCTAGATGTCGGTATGATGTGTTGTCTGGCTCGTTGAATGGTCCAGCTGTGAAATTTGCAAATGTTGGAGATATTGTAGTACATAAATGGACTTGTGATAGTGGTAAAGACCTTGAAATTTCGCTCTTTTCGGAAGGAAAAAATTTTCAGACCGCTACGGATTTGTTGTCCATTCTTGTGCGGTTCGAGATGAATCTGGAAAGGATTTTCAGTTTATTGATGAGAGAGGGTAAGTCCATAGAATTCCAATTTTGATTCAATTTTATCTTGGTTCCTGTAGAAGATATCAAAAAGTGGTTAACTAACAATTAGTTGCTGATTTCATGATAAACATTTTGTCAATTGACCTCTTTTAGATATCTTTTACAGGAAGCGAGATAGAAGGGGTCAAAGGGTCGGAGCCCCTGACGCTGTCGGCTCTGCGACAGTGTAGCTCAGCCGGTAAAAGCGCGGAACTAACAGGTCCAAGAAGAGATTTTAAAAATGTGTTAGGAAGAACTTCAAGAGTGCAAAAAAAAACAAATATCCCGCTATCAAAAACCTGTTCCCAAGACAAGATTTCTAACTTTTACCTCACATCTCCGAAGACTTCCAGGCTGCGCCAAAGTGCCTTCAACTTTGAGCCACTTTATCTAGCTTCCTGTAAAAGATATCAAAAAGTGGTTAATAGACAAAATATTGATGATATTATGCTAAACAATTTATCAGTTGACCACTTCTTGATATCTTTTACAGGAAGCGAGATAAATGAGCTCA</canonical>
            <polymorphic>CCAGGTGACGCCTCCATCAATTTCCTATGACGTCACCGTAATCATTCAACATCACCCAATGTTTATCACTTCTTTTGATAAAGCATACCGATTGAATTGTATCTACCGGCAACAAGAATCAGTGTTACAACAAAGGATTAATGTGTCGTAAGTTTATCAGTAAATCTCATATGCTTCATCAGTTTAGCGTATATGCTAAAATTCCAGAGACATTCCTTCCACATCTCTCCAAAGTAAAAACCCGCCTAGATGTCGGTATGATGTGTTGTCTGGCTCGTTGAATGGTCCAGCTGTGAAATTTGCAAATGTTGGAGATATTGTAGTACATAAATGGACTTGTGATAGTGGTAAAGACCTTGAAATTTCGCTCTTTTCGGAAGGAAAAAATTTTCAGACCGCTACGGATTTGTTGTCCATTCTTGTGCGGTTCGAGATGAATCTGGAAAGGATTTTCAGTTTATTGATGAGAGAGGGTAAGTCCATAGAATTCCAATTTTGAKTCAATTTTATCTTGGTTCCTGTAGAAGATATCAAAAAGTGGTTAACTAACAATTAGTTGCTGATTTCATGATAAACATTTTGTCAATTGACCTCTTTTAGATATCTTTTACAGGAAGCGAGATAGAAGGGGTCAAAGGGTCGGAGCCCCTGACGCTGTCGGCTCTGCGACAGTGTAGCTCAGCCGGTAAAAGCGCGGAACTAACAGGTCCAAGAAGAGATTTTAAAAATGTGTTAGGAAGAACTTCAAGAGTGCAAAAAAAAACAAATATCCCGCTATCAAAAACCTGTTCCCAAGACAAGATTTCTAACTTTTACCTCACATCTCCGAAGACTTCCAGGCTGCGCCAAAGTGCCTTCAACTTTGAGCCACTTTATCTAGCTTCCTGTAAAAGATATCAAAAAGTGGTTAATAGACAAAATATTGATGATATTATGCTAAACAATTTATCAGTTGACCACTTCTTGATATCTTTTACAGGAAGCGAGATAAATGAGCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 320 116 62</canonical_bands>
                <polymorphic_bands>564 320 116</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTTTCAGTTTATTGATGAGA</pcr_primer_p1>
		<pcr_primer_p2>ATCTCTTCTTGGACCTGTTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>GGATTTTCAGTTTATTGATGAGAGAGGGTAAGTCCATAGAATTCCAATTTTGATTCAATTTTATCTTGGTTCCTGTAGAAGATATCAAAAAGTGGTTAACTAACAATTAGTTGCTGATTTCATGATAAACATTTTGTCAATTGACCTCTTTTAGATATCTTTTACAGGAAGCGAGATAGAAGGGGTCAAAGGGTCGGAGCCCCTGACGCTGTCGGCTCTGCGACAGTGTAGCTCAGCCGGTAAAAGCGCGGAACTAACAGGTCCAAGAAGAGAT</canonical_amplicon>
		<polymorphic_amplicon>GGATTTTCAGTTTATTGATGAGAGAGGGTAAGTCCATAGAATTCCAATTTTGAKTCAATTTTATCTTGGTTCCTGTAGAAGATATCAAAAAGTGGTTAACTAACAATTAGTTGCTGATTTCATGATAAACATTTTGTCAATTGACCTCTTTTAGATATCTTTTACAGGAAGCGAGATAGAAGGGGTCAAAGGGTCGGAGCCCCTGACGCTGTCGGCTCTGCGACAGTGTAGCTCAGCCGGTAAAAGCGCGGAACTAACAGGTCCAAGAAGAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27938</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>106837</contig_pos>
        <strand>+</strand>
        <context>TCAAGAGTGC[G/T]AAAAAAAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGGTCCAAGAAGAGATTTTAAAAATGTGTTAGGAAGAACTTCAAGAGTGC</left_flank>
        <right_flank>AAAAAAAACAAATATCCCGCTATCAAAAACCTGTTCCCAAGACAAGATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATGATGTGTTGTCTGGCTCGTTGAATGGTCCAGCTGTGAAATTTGCAAATGTTGGAGATATTGTAGTACATAAATGGACTTGTGATAGTGGTAAAGACCTTGAAATTTCGCTCTTTTCGGAAGGAAAAAATTTTCAGACCGCTACGGATTTGTTGTCCATTCTTGTGCGGTTCGAGATGAATCTGGAAAGGATTTTCAGTTTATTGATGAGAGAGGGTAAGTCCATAGAATTCCAATTTTGATTCAATTTTATCTTGGTTCCTGTAGAAGATATCAAAAAGTGGTTAACTAACAATTAGTTGCTGATTTCATGATAAACATTTTGTCAATTGACCTCTTTTAGATATCTTTTACAGGAAGCGAGATAGAAGGGGTCAAAGGGTCGGAGCCCCTGACGCTGTCGGCTCTGCGACAGTGTAGCTCAGCCGGTAAAAGCGCGGAACTAACAGGTCCAAGAAGAGATTTTAAAAATGTGTTAGGAAGAACTTCAAGAGTGCAAAAAAAAACAAATATCCCGCTATCAAAAACCTGTTCCCAAGACAAGATTTCTAACTTTTACCTCACATCTCCGAAGACTTCCAGGCTGCGCCAAAGTGCCTTCAACTTTGAGCCACTTTATCTAGCTTCCTGTAAAAGATATCAAAAAGTGGTTAATAGACAAAATATTGATGATATTATGCTAAACAATTTATCAGTTGACCACTTCTTGATATCTTTTACAGGAAGCGAGATAAATGAGCTCAACGTTGACGACTGATTTTTAATTTTTCTTTGTGATATTTTTGAGACTAAACATTATGTTTAGACTCTTTAGAACTCAAATTTAATCTCCTCAAAATTTGTAATGTTTCTTTTCTTCCAGATGCGTCACAGATTACAGTCTATTCCCCGAAGTCACCTATTCTTCGGATCTGAAATCTGCGTTCACTGCAGTCCGGGCTTTTCGATATGCTGATCAAGTGATGGTCCATTTCTCATGTCAAATTACAACTTGTCAG</canonical>
            <polymorphic>GTATGATGTGTTGTCTGGCTCGTTGAATGGTCCAGCTGTGAAATTTGCAAATGTTGGAGATATTGTAGTACATAAATGGACTTGTGATAGTGGTAAAGACCTTGAAATTTCGCTCTTTTCGGAAGGAAAAAATTTTCAGACCGCTACGGATTTGTTGTCCATTCTTGTGCGGTTCGAGATGAATCTGGAAAGGATTTTCAGTTTATTGATGAGAGAGGGTAAGTCCATAGAATTCCAATTTTGATTCAATTTTATCTTGGTTCCTGTAGAAGATATCAAAAAGTGGTTAACTAACAATTAGTTGCTGATTTCATGATAAACATTTTGTCAATTGACCTCTTTTAGATATCTTTTACAGGAAGCGAGATAGAAGGGGTCAAAGGGTCGGAGCCCCTGACGCTGTCGGCTCTGCGACAGTGTAGCTCAGCCGGTAAAAGCGCGGAACTAACAGGTCCAAGAAGAGATTTTAAAAATGTGTTAGGAAGAACTTCAAGAGTGCKAAAAAAAACAAATATCCCGCTATCAAAAACCTGTTCCCAAGACAAGATTTCTAACTTTTACCTCACATCTCCGAAGACTTCCAGGCTGCGCCAAAGTGCCTTCAACTTTGAGCCACTTTATCTAGCTTCCTGTAAAAGATATCAAAAAGTGGTTAATAGACAAAATATTGATGATATTATGCTAAACAATTTATCAGTTGACCACTTCTTGATATCTTTTACAGGAAGCGAGATAAATGAGCTCAACGTTGACGACTGATTTTTAATTTTTCTTTGTGATATTTTTGAGACTAAACATTATGTTTAGACTCTTTAGAACTCAAATTTAATCTCCTCAAAATTTGTAATGTTTCTTTTCTTCCAGATGCGTCACAGATTACAGTCTATTCCCCGAAGTCACCTATTCTTCGGATCTGAAATCTGCGTTCACTGCAGTCCGGGCTTTTCGATATGCTGATCAAGTGATGGTCCATTTCTCATGTCAAATTACAACTTGTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>451 434 68 47</canonical_bands>
                <polymorphic_bands>885 68 47</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTAACAGGTCCAAGAAGAGAT</pcr_primer_p1>
		<pcr_primer_p2>GGAGATGTGAGGTAAAAGTTAGA</pcr_primer_p2>
		<pcr_amplicon_size>130</pcr_amplicon_size>
		<canonical_amplicon>AACTAACAGGTCCAAGAAGAGATTTTAAAAATGTGTTAGGAAGAACTTCAAGAGTGCAAAAAAAAACAAATATCCCGCTATCAAAAACCTGTTCCCAAGACAAGATTTCTAACTTTTACCTCACATCTCC</canonical_amplicon>
		<polymorphic_amplicon>AACTAACAGGTCCAAGAAGAGATTTTAAAAATGTGTTAGGAAGAACTTCAAGAGTGCKAAAAAAAACAAATATCCCGCTATCAAAAACCTGTTCCCAAGACAAGATTTCTAACTTTTACCTCACATCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27939</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>115841</contig_pos>
        <strand></strand>
        <context>aatcgggtga[A/C]gttctattag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTCTCACAGAAAATGAGATACATGGGCTAAAATTTGACGAATCGGGTGA</left_flank>
        <right_flank>GTTCTATTAGAGTGTTTACGGTATACCGAAACTCCGTTTTTAGTTGATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTAAATGGAATTCAAAAAACCCCCATAATAGAAAAGTTTCCAGTCACAAAAATGCAAAAAAGGTGTGTTGGGGAAATCGGCGAAAATCTGAATAACTAGGAATTTTCAAAAAATTCTATAAATGCAAAGTTTTCACCCTAGGAGAGGGCGAAAAGAAGGAAGGAACTCCGCCGATGAGGGTTACTGTAAAACATACCGTTTTTTCTACTTTTTGAGTTAATTTTATAGGACAGTTCAAGAGATCTTAGTTAGAATGTTTTGTTTTGGGATTATTACACAGAGTATCGGTCAATAAGATACCCTAAACACTCTAATAAAGCGCCACTTGGATCGTCCACTTTGAGCCTAAATATCTTTCTTCTTTTGGAAGATATCCAAAAGTTGTCGACTTATAAAATGTTTATCATAATATCAGCAATGTTTTATCAATTGACAAATGTTCGATATCTCTCACAGAAAATGAGATACATGGGCTAAAATTTGACGAATCGGGTGAAGTTCTATTAGAGTGTTTACGGTATACCGAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAGAAAACTAGGCCACGCGAGCGGCGCGACTTT</canonical>
            <polymorphic>CATTTAAATGGAATTCAAAAAACCCCCATAATAGAAAAGTTTCCAGTCACAAAAATGCAAAAAAGGTGTGTTGGGGAAATCGGCGAAAATCTGAATAACTAGGAATTTTCAAAAAATTCTATAAATGCAAAGTTTTCACCCTAGGAGAGGGCGAAAAGAAGGAAGGAACTCCGCCGATGAGGGTTACTGTAAAACATACCGTTTTTTCTACTTTTTGAGTTAATTTTATAGGACAGTTCAAGAGATCTTAGTTAGAATGTTTTGTTTTGGGATTATTACACAGAGTATCGGTCAATAAGATACCCTAAACACTCTAATAAAGCGCCACTTGGATCGTCCACTTTGAGCCTAAATATCTTTCTTCTTTTGGAAGATATCCAAAAGTTGTCGACTTATAAAATGTTTATCATAATATCAGCAATGTTTTATCAATTGACAAATGTTCGATATCTCTCACAGAAAATGAGATACATGGGCTAAAATTTGACGAATCGGGTGAMGTTCTATTAGAGTGTTTACGGTATACCGAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAGAAAACTAGGCCACGCGAGCGGCGCGACTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAGAGTATCGGTCAATAAGAT</pcr_primer_p1>
		<pcr_primer_p2>CTCACTGAAAATCGATATCCTC</pcr_primer_p2>
		<pcr_amplicon_size>692</pcr_amplicon_size>
		<canonical_amplicon>CACAGAGTATCGGTCAATAAGATACCCTAAACACTCTAATAAAGCGCCACTTGGATCGTCCACTTTGAGCCTAAATATCTTTCTTCTTTTGGAAGATATCCAAAAGTTGTCGACTTATAAAATGTTTATCATAATATCAGCAATGTTTTATCAATTGACAAATGTTCGATATCTCTCACAGAAAATGAGATACATGGGCTAAAATTTGACGAATCGGGTGAAGTTCTATTAGAGTGTTTACGGTATACCGAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAG</canonical_amplicon>
		<polymorphic_amplicon>CACAGAGTATCGGTCAATAAGATACCCTAAACACTCTAATAAAGCGCCACTTGGATCGTCCACTTTGAGCCTAAATATCTTTCTTCTTTTGGAAGATATCCAAAAGTTGTCGACTTATAAAATGTTTATCATAATATCAGCAATGTTTTATCAATTGACAAATGTTCGATATCTCTCACAGAAAATGAGATACATGGGCTAAAATTTGACGAATCGGGTGAMGTTCTATTAGAGTGTTTACGGTATACCGAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27940</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>115982</contig_pos>
        <strand></strand>
        <context>tgccgatacc[T/C]tttttggtct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACC</left_flank>
        <right_flank>TTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGAGAGGGCGAAAAGAAGGAAGGAACTCCGCCGATGAGGGTTACTGTAAAACATACCGTTTTTTCTACTTTTTGAGTTAATTTTATAGGACAGTTCAAGAGATCTTAGTTAGAATGTTTTGTTTTGGGATTATTACACAGAGTATCGGTCAATAAGATACCCTAAACACTCTAATAAAGCGCCACTTGGATCGTCCACTTTGAGCCTAAATATCTTTCTTCTTTTGGAAGATATCCAAAAGTTGTCGACTTATAAAATGTTTATCATAATATCAGCAATGTTTTATCAATTGACAAATGTTCGATATCTCTCACAGAAAATGAGATACATGGGCTAAAATTTGACGAATCGGGTGAAGTTCTATTAGAGTGTTTACGGTATACCGAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAGAAAACTAGGCCACGCGAGCGGCGCGACTTTCTTAACGGACAAATTTTCCGGAGTTTGTTCGCTTTTATCTCCGACAGGTAAAAAACGTTAAAAAACACTGTCGGCCACTTAAAAATAATGCTATCAGGCGCCGTGGCCTAGTTTTCTCATTGCGAGGGAATTCAAATCCTC</canonical>
            <polymorphic>TAGGAGAGGGCGAAAAGAAGGAAGGAACTCCGCCGATGAGGGTTACTGTAAAACATACCGTTTTTTCTACTTTTTGAGTTAATTTTATAGGACAGTTCAAGAGATCTTAGTTAGAATGTTTTGTTTTGGGATTATTACACAGAGTATCGGTCAATAAGATACCCTAAACACTCTAATAAAGCGCCACTTGGATCGTCCACTTTGAGCCTAAATATCTTTCTTCTTTTGGAAGATATCCAAAAGTTGTCGACTTATAAAATGTTTATCATAATATCAGCAATGTTTTATCAATTGACAAATGTTCGATATCTCTCACAGAAAATGAGATACATGGGCTAAAATTTGACGAATCGGGTGAAGTTCTATTAGAGTGTTTACGGTATACCGAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCYTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAGAAAACTAGGCCACGCGAGCGGCGCGACTTTCTTAACGGACAAATTTTCCGGAGTTTGTTCGCTTTTATCTCCGACAGGTAAAAAACGTTAAAAAACACTGTCGGCCACTTAAAAATAATGCTATCAGGCGCCGTGGCCTAGTTTTCTCATTGCGAGGGAATTCAAATCCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACTCCGTTTTTAGTTGATT</pcr_primer_p1>
		<pcr_primer_p2>CTCACTGAAAATCGATATCCTC</pcr_primer_p2>
		<pcr_amplicon_size>443</pcr_amplicon_size>
		<canonical_amplicon>GAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAG</canonical_amplicon>
		<polymorphic_amplicon>GAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCYTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27941</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>116013</contig_pos>
        <strand></strand>
        <context>ggaaaacgtt[A/T]aaaaaacggg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTT</left_flank>
        <right_flank>AAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCGATGAGGGTTACTGTAAAACATACCGTTTTTTCTACTTTTTGAGTTAATTTTATAGGACAGTTCAAGAGATCTTAGTTAGAATGTTTTGTTTTGGGATTATTACACAGAGTATCGGTCAATAAGATACCCTAAACACTCTAATAAAGCGCCACTTGGATCGTCCACTTTGAGCCTAAATATCTTTCTTCTTTTGGAAGATATCCAAAAGTTGTCGACTTATAAAATGTTTATCATAATATCAGCAATGTTTTATCAATTGACAAATGTTCGATATCTCTCACAGAAAATGAGATACATGGGCTAAAATTTGACGAATCGGGTGAAGTTCTATTAGAGTGTTTACGGTATACCGAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAGAAAACTAGGCCACGCGAGCGGCGCGACTTTCTTAACGGACAAATTTTCCGGAGTTTGTTCGCTTTTATCTCCGACAGGTAAAAAACGTTAAAAAACACTGTCGGCCACTTAAAAATAATGCTATCAGGCGCCGTGGCCTAGTTTTCTCATTGCGAGGGAATTCAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTT</canonical>
            <polymorphic>GCCGATGAGGGTTACTGTAAAACATACCGTTTTTTCTACTTTTTGAGTTAATTTTATAGGACAGTTCAAGAGATCTTAGTTAGAATGTTTTGTTTTGGGATTATTACACAGAGTATCGGTCAATAAGATACCCTAAACACTCTAATAAAGCGCCACTTGGATCGTCCACTTTGAGCCTAAATATCTTTCTTCTTTTGGAAGATATCCAAAAGTTGTCGACTTATAAAATGTTTATCATAATATCAGCAATGTTTTATCAATTGACAAATGTTCGATATCTCTCACAGAAAATGAGATACATGGGCTAAAATTTGACGAATCGGGTGAAGTTCTATTAGAGTGTTTACGGTATACCGAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTWAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAGAAAACTAGGCCACGCGAGCGGCGCGACTTTCTTAACGGACAAATTTTCCGGAGTTTGTTCGCTTTTATCTCCGACAGGTAAAAAACGTTAAAAAACACTGTCGGCCACTTAAAAATAATGCTATCAGGCGCCGTGGCCTAGTTTTCTCATTGCGAGGGAATTCAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>450 166 93 63 59 56 48 44 21</canonical_bands>
                <polymorphic_bands>513 166 93 59 56 48 44 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAACTCCGTTTTTAGTTGATT</pcr_primer_p1>
		<pcr_primer_p2>CTCACTGAAAATCGATATCCTC</pcr_primer_p2>
		<pcr_amplicon_size>443</pcr_amplicon_size>
		<canonical_amplicon>GAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAG</canonical_amplicon>
		<polymorphic_amplicon>GAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTWAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27942</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>116059</contig_pos>
        <strand></strand>
        <context>agcacataaa[A/T]tttttacaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAA</left_flank>
        <right_flank>TTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTAATTTTATAGGACAGTTCAAGAGATCTTAGTTAGAATGTTTTGTTTTGGGATTATTACACAGAGTATCGGTCAATAAGATACCCTAAACACTCTAATAAAGCGCCACTTGGATCGTCCACTTTGAGCCTAAATATCTTTCTTCTTTTGGAAGATATCCAAAAGTTGTCGACTTATAAAATGTTTATCATAATATCAGCAATGTTTTATCAATTGACAAATGTTCGATATCTCTCACAGAAAATGAGATACATGGGCTAAAATTTGACGAATCGGGTGAAGTTCTATTAGAGTGTTTACGGTATACCGAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAGAAAACTAGGCCACGCGAGCGGCGCGACTTTCTTAACGGACAAATTTTCCGGAGTTTGTTCGCTTTTATCTCCGACAGGTAAAAAACGTTAAAAAACACTGTCGGCCACTTAAAAATAATGCTATCAGGCGCCGTGGCCTAGTTTTCTCATTGCGAGGGAATTCAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTTCATTTTCAACGGCGTTTTTCGGGGATTTCGGATTACTTTTGAATTT</canonical>
            <polymorphic>GTTAATTTTATAGGACAGTTCAAGAGATCTTAGTTAGAATGTTTTGTTTTGGGATTATTACACAGAGTATCGGTCAATAAGATACCCTAAACACTCTAATAAAGCGCCACTTGGATCGTCCACTTTGAGCCTAAATATCTTTCTTCTTTTGGAAGATATCCAAAAGTTGTCGACTTATAAAATGTTTATCATAATATCAGCAATGTTTTATCAATTGACAAATGTTCGATATCTCTCACAGAAAATGAGATACATGGGCTAAAATTTGACGAATCGGGTGAAGTTCTATTAGAGTGTTTACGGTATACCGAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAWTTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAGAAAACTAGGCCACGCGAGCGGCGCGACTTTCTTAACGGACAAATTTTCCGGAGTTTGTTCGCTTTTATCTCCGACAGGTAAAAAACGTTAAAAAACACTGTCGGCCACTTAAAAATAATGCTATCAGGCGCCGTGGCCTAGTTTTCTCATTGCGAGGGAATTCAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTTCATTTTCAACGGCGTTTTTCGGGGATTTCGGATTACTTTTGAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>262 117 108 108 91 73 49 48 36 33 21 19 11 10 9 5</canonical_bands>
                <polymorphic_bands>262 129 117 108 91 73 49 48 36 33 19 11 10 9 5</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>209 117 108 91 85 50 49 48 44 36 33 29 19 16 11 11 10 10 9 7 5 3</canonical_bands>
                <polymorphic_bands>209 117 108 91 85 50 49 48 44 36 33 29 26 19 11 11 10 9 7 5 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAACTCCGTTTTTAGTTGATT</pcr_primer_p1>
		<pcr_primer_p2>CTCACTGAAAATCGATATCCTC</pcr_primer_p2>
		<pcr_amplicon_size>443</pcr_amplicon_size>
		<canonical_amplicon>GAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAG</canonical_amplicon>
		<polymorphic_amplicon>GAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAWTTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27943</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>116128</contig_pos>
        <strand></strand>
        <context>aagagttatg[C/T]gcctttaaag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATG</left_flank>
        <right_flank>GCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGGTCAATAAGATACCCTAAACACTCTAATAAAGCGCCACTTGGATCGTCCACTTTGAGCCTAAATATCTTTCTTCTTTTGGAAGATATCCAAAAGTTGTCGACTTATAAAATGTTTATCATAATATCAGCAATGTTTTATCAATTGACAAATGTTCGATATCTCTCACAGAAAATGAGATACATGGGCTAAAATTTGACGAATCGGGTGAAGTTCTATTAGAGTGTTTACGGTATACCGAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAGAAAACTAGGCCACGCGAGCGGCGCGACTTTCTTAACGGACAAATTTTCCGGAGTTTGTTCGCTTTTATCTCCGACAGGTAAAAAACGTTAAAAAACACTGTCGGCCACTTAAAAATAATGCTATCAGGCGCCGTGGCCTAGTTTTCTCATTGCGAGGGAATTCAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTTCATTTTCAACGGCGTTTTTCGGGGATTTCGGATTACTTTTGAATTTTTTCACAATAATATTAGGAAAATAGAAAACTTTTAACACATTTTAATACAACAAAAATTTTTGCTCGGA</canonical>
            <polymorphic>TCGGTCAATAAGATACCCTAAACACTCTAATAAAGCGCCACTTGGATCGTCCACTTTGAGCCTAAATATCTTTCTTCTTTTGGAAGATATCCAAAAGTTGTCGACTTATAAAATGTTTATCATAATATCAGCAATGTTTTATCAATTGACAAATGTTCGATATCTCTCACAGAAAATGAGATACATGGGCTAAAATTTGACGAATCGGGTGAAGTTCTATTAGAGTGTTTACGGTATACCGAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGYGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAGAAAACTAGGCCACGCGAGCGGCGCGACTTTCTTAACGGACAAATTTTCCGGAGTTTGTTCGCTTTTATCTCCGACAGGTAAAAAACGTTAAAAAACACTGTCGGCCACTTAAAAATAATGCTATCAGGCGCCGTGGCCTAGTTTTCTCATTGCGAGGGAATTCAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTTCATTTTCAACGGCGTTTTTCGGGGATTTCGGATTACTTTTGAATTTTTTCACAATAATATTAGGAAAATAGAAAACTTTTAACACATTTTAATACAACAAAAATTTTTGCTCGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>464 205 187 107 37</canonical_bands>
                <polymorphic_bands>669 187 107 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAACTCCGTTTTTAGTTGATT</pcr_primer_p1>
		<pcr_primer_p2>CTCACTGAAAATCGATATCCTC</pcr_primer_p2>
		<pcr_amplicon_size>443</pcr_amplicon_size>
		<canonical_amplicon>GAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAG</canonical_amplicon>
		<polymorphic_amplicon>GAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGYGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27944</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>116188</contig_pos>
        <strand></strand>
        <context>taaaattcat[C/T]tattttcaga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCAT</left_flank>
        <right_flank>TATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTAAATATCTTTCTTCTTTTGGAAGATATCCAAAAGTTGTCGACTTATAAAATGTTTATCATAATATCAGCAATGTTTTATCAATTGACAAATGTTCGATATCTCTCACAGAAAATGAGATACATGGGCTAAAATTTGACGAATCGGGTGAAGTTCTATTAGAGTGTTTACGGTATACCGAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAGAAAACTAGGCCACGCGAGCGGCGCGACTTTCTTAACGGACAAATTTTCCGGAGTTTGTTCGCTTTTATCTCCGACAGGTAAAAAACGTTAAAAAACACTGTCGGCCACTTAAAAATAATGCTATCAGGCGCCGTGGCCTAGTTTTCTCATTGCGAGGGAATTCAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTTCATTTTCAACGGCGTTTTTCGGGGATTTCGGATTACTTTTGAATTTTTTCACAATAATATTAGGAAAATAGAAAACTTTTAACACATTTTAATACAACAAAAATTTTTGCTCGGAGTCCCCCTTTAAACTTCCTGAAGAGTAGGACGATGCATCATGTCGGATGTTTAAAGGCGC</canonical>
            <polymorphic>CCTAAATATCTTTCTTCTTTTGGAAGATATCCAAAAGTTGTCGACTTATAAAATGTTTATCATAATATCAGCAATGTTTTATCAATTGACAAATGTTCGATATCTCTCACAGAAAATGAGATACATGGGCTAAAATTTGACGAATCGGGTGAAGTTCTATTAGAGTGTTTACGGTATACCGAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATYTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAGAAAACTAGGCCACGCGAGCGGCGCGACTTTCTTAACGGACAAATTTTCCGGAGTTTGTTCGCTTTTATCTCCGACAGGTAAAAAACGTTAAAAAACACTGTCGGCCACTTAAAAATAATGCTATCAGGCGCCGTGGCCTAGTTTTCTCATTGCGAGGGAATTCAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTTCATTTTCAACGGCGTTTTTCGGGGATTTCGGATTACTTTTGAATTTTTTCACAATAATATTAGGAAAATAGAAAACTTTTAACACATTTTAATACAACAAAAATTTTTGCTCGGAGTCCCCCTTTAAACTTCCTGAAGAGTAGGACGATGCATCATGTCGGATGTTTAAAGGCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACTCCGTTTTTAGTTGATT</pcr_primer_p1>
		<pcr_primer_p2>CTCACTGAAAATCGATATCCTC</pcr_primer_p2>
		<pcr_amplicon_size>443</pcr_amplicon_size>
		<canonical_amplicon>GAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAG</canonical_amplicon>
		<polymorphic_amplicon>GAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATYTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27945</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>116235</contig_pos>
        <strand></strand>
        <context>aatccgaaat[C/T]yccaaaaaac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAAT</left_flank>
        <right_flank>CCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAAATGTTTATCATAATATCAGCAATGTTTTATCAATTGACAAATGTTCGATATCTCTCACAGAAAATGAGATACATGGGCTAAAATTTGACGAATCGGGTGAAGTTCTATTAGAGTGTTTACGGTATACCGAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAGAAAACTAGGCCACGCGAGCGGCGCGACTTTCTTAACGGACAAATTTTCCGGAGTTTGTTCGCTTTTATCTCCGACAGGTAAAAAACGTTAAAAAACACTGTCGGCCACTTAAAAATAATGCTATCAGGCGCCGTGGCCTAGTTTTCTCATTGCGAGGGAATTCAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTTCATTTTCAACGGCGTTTTTCGGGGATTTCGGATTACTTTTGAATTTTTTCACAATAATATTAGGAAAATAGAAAACTTTTAACACATTTTAATACAACAAAAATTTTTGCTCGGAGTCCCCCTTTAAACTTCCTGAAGAGTAGGACGATGCATCATGTCGGATGTTTAAAGGCGCATATCTAGCTTCAAAATTGAGATAGAAAAATGAAAGTTATACCATTT</canonical>
            <polymorphic>ATAAAATGTTTATCATAATATCAGCAATGTTTTATCAATTGACAAATGTTCGATATCTCTCACAGAAAATGAGATACATGGGCTAAAATTTGACGAATCGGGTGAAGTTCTATTAGAGTGTTTACGGTATACCGAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATYCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAGAAAACTAGGCCACGCGAGCGGCGCGACTTTCTTAACGGACAAATTTTCCGGAGTTTGTTCGCTTTTATCTCCGACAGGTAAAAAACGTTAAAAAACACTGTCGGCCACTTAAAAATAATGCTATCAGGCGCCGTGGCCTAGTTTTCTCATTGCGAGGGAATTCAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTTCATTTTCAACGGCGTTTTTCGGGGATTTCGGATTACTTTTGAATTTTTTCACAATAATATTAGGAAAATAGAAAACTTTTAACACATTTTAATACAACAAAAATTTTTGCTCGGAGTCCCCCTTTAAACTTCCTGAAGAGTAGGACGATGCATCATGTCGGATGTTTAAAGGCGCATATCTAGCTTCAAAATTGAGATAGAAAAATGAAAGTTATACCATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACTCCGTTTTTAGTTGATT</pcr_primer_p1>
		<pcr_primer_p2>CTCACTGAAAATCGATATCCTC</pcr_primer_p2>
		<pcr_amplicon_size>443</pcr_amplicon_size>
		<canonical_amplicon>GAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAG</canonical_amplicon>
		<polymorphic_amplicon>GAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATYCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27946</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>116236</contig_pos>
        <strand></strand>
        <context>atccgaaaty[C/T]ccaaaaaacg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATC</left_flank>
        <right_flank>CCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAATGTTTATCATAATATCAGCAATGTTTTATCAATTGACAAATGTTCGATATCTCTCACAGAAAATGAGATACATGGGCTAAAATTTGACGAATCGGGTGAAGTTCTATTAGAGTGTTTACGGTATACCGAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAGAAAACTAGGCCACGCGAGCGGCGCGACTTTCTTAACGGACAAATTTTCCGGAGTTTGTTCGCTTTTATCTCCGACAGGTAAAAAACGTTAAAAAACACTGTCGGCCACTTAAAAATAATGCTATCAGGCGCCGTGGCCTAGTTTTCTCATTGCGAGGGAATTCAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTTCATTTTCAACGGCGTTTTTCGGGGATTTCGGATTACTTTTGAATTTTTTCACAATAATATTAGGAAAATAGAAAACTTTTAACACATTTTAATACAACAAAAATTTTTGCTCGGAGTCCCCCTTTAAACTTCCTGAAGAGTAGGACGATGCATCATGTCGGATGTTTAAAGGCGCATATCTAGCTTCAAAATTGAGATAGAAAAATGAAAGTTATACCATTTT</canonical>
            <polymorphic>TAAAATGTTTATCATAATATCAGCAATGTTTTATCAATTGACAAATGTTCGATATCTCTCACAGAAAATGAGATACATGGGCTAAAATTTGACGAATCGGGTGAAGTTCTATTAGAGTGTTTACGGTATACCGAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCYCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAGAAAACTAGGCCACGCGAGCGGCGCGACTTTCTTAACGGACAAATTTTCCGGAGTTTGTTCGCTTTTATCTCCGACAGGTAAAAAACGTTAAAAAACACTGTCGGCCACTTAAAAATAATGCTATCAGGCGCCGTGGCCTAGTTTTCTCATTGCGAGGGAATTCAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTTCATTTTCAACGGCGTTTTTCGGGGATTTCGGATTACTTTTGAATTTTTTCACAATAATATTAGGAAAATAGAAAACTTTTAACACATTTTAATACAACAAAAATTTTTGCTCGGAGTCCCCCTTTAAACTTCCTGAAGAGTAGGACGATGCATCATGTCGGATGTTTAAAGGCGCATATCTAGCTTCAAAATTGAGATAGAAAAATGAAAGTTATACCATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACTCCGTTTTTAGTTGATT</pcr_primer_p1>
		<pcr_primer_p2>CTCACTGAAAATCGATATCCTC</pcr_primer_p2>
		<pcr_amplicon_size>443</pcr_amplicon_size>
		<canonical_amplicon>GAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAG</canonical_amplicon>
		<polymorphic_amplicon>GAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCYCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27947</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>116257</contig_pos>
        <strand></strand>
        <context>ccgttgaaaa[A/G]RAAAAATTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAA</left_flank>
        <right_flank>AAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCAATGTTTTATCAATTGACAAATGTTCGATATCTCTCACAGAAAATGAGATACATGGGCTAAAATTTGACGAATCGGGTGAAGTTCTATTAGAGTGTTTACGGTATACCGAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAGAAAACTAGGCCACGCGAGCGGCGCGACTTTCTTAACGGACAAATTTTCCGGAGTTTGTTCGCTTTTATCTCCGACAGGTAAAAAACGTTAAAAAACACTGTCGGCCACTTAAAAATAATGCTATCAGGCGCCGTGGCCTAGTTTTCTCATTGCGAGGGAATTCAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTTCATTTTCAACGGCGTTTTTCGGGGATTTCGGATTACTTTTGAATTTTTTCACAATAATATTAGGAAAATAGAAAACTTTTAACACATTTTAATACAACAAAAATTTTTGCTCGGAGTCCCCCTTTAAACTTCCTGAAGAGTAGGACGATGCATCATGTCGGATGTTTAAAGGCGCATATCTAGCTTCAAAATTGAGATAGAAAAATGAAAGTTATACCATTTTGTAGATAATTTAAACGGCTTT</canonical>
            <polymorphic>AGCAATGTTTTATCAATTGACAAATGTTCGATATCTCTCACAGAAAATGAGATACATGGGCTAAAATTTGACGAATCGGGTGAAGTTCTATTAGAGTGTTTACGGTATACCGAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAARAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAGAAAACTAGGCCACGCGAGCGGCGCGACTTTCTTAACGGACAAATTTTCCGGAGTTTGTTCGCTTTTATCTCCGACAGGTAAAAAACGTTAAAAAACACTGTCGGCCACTTAAAAATAATGCTATCAGGCGCCGTGGCCTAGTTTTCTCATTGCGAGGGAATTCAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTTCATTTTCAACGGCGTTTTTCGGGGATTTCGGATTACTTTTGAATTTTTTCACAATAATATTAGGAAAATAGAAAACTTTTAACACATTTTAATACAACAAAAATTTTTGCTCGGAGTCCCCCTTTAAACTTCCTGAAGAGTAGGACGATGCATCATGTCGGATGTTTAAAGGCGCATATCTAGCTTCAAAATTGAGATAGAAAAATGAAAGTTATACCATTTTGTAGATAATTTAAACGGCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACTCCGTTTTTAGTTGATT</pcr_primer_p1>
		<pcr_primer_p2>CTCACTGAAAATCGATATCCTC</pcr_primer_p2>
		<pcr_amplicon_size>443</pcr_amplicon_size>
		<canonical_amplicon>GAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAG</canonical_amplicon>
		<polymorphic_amplicon>GAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAARAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27948</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>116258</contig_pos>
        <strand></strand>
        <context>cgttgaaaar[A/G]AAAAATTCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAA</left_flank>
        <right_flank>AAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAATGTTTTATCAATTGACAAATGTTCGATATCTCTCACAGAAAATGAGATACATGGGCTAAAATTTGACGAATCGGGTGAAGTTCTATTAGAGTGTTTACGGTATACCGAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAGAAAACTAGGCCACGCGAGCGGCGCGACTTTCTTAACGGACAAATTTTCCGGAGTTTGTTCGCTTTTATCTCCGACAGGTAAAAAACGTTAAAAAACACTGTCGGCCACTTAAAAATAATGCTATCAGGCGCCGTGGCCTAGTTTTCTCATTGCGAGGGAATTCAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTTCATTTTCAACGGCGTTTTTCGGGGATTTCGGATTACTTTTGAATTTTTTCACAATAATATTAGGAAAATAGAAAACTTTTAACACATTTTAATACAACAAAAATTTTTGCTCGGAGTCCCCCTTTAAACTTCCTGAAGAGTAGGACGATGCATCATGTCGGATGTTTAAAGGCGCATATCTAGCTTCAAAATTGAGATAGAAAAATGAAAGTTATACCATTTTGTAGATAATTTAAACGGCTTTG</canonical>
            <polymorphic>GCAATGTTTTATCAATTGACAAATGTTCGATATCTCTCACAGAAAATGAGATACATGGGCTAAAATTTGACGAATCGGGTGAAGTTCTATTAGAGTGTTTACGGTATACCGAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAARAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAGAAAACTAGGCCACGCGAGCGGCGCGACTTTCTTAACGGACAAATTTTCCGGAGTTTGTTCGCTTTTATCTCCGACAGGTAAAAAACGTTAAAAAACACTGTCGGCCACTTAAAAATAATGCTATCAGGCGCCGTGGCCTAGTTTTCTCATTGCGAGGGAATTCAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTTCATTTTCAACGGCGTTTTTCGGGGATTTCGGATTACTTTTGAATTTTTTCACAATAATATTAGGAAAATAGAAAACTTTTAACACATTTTAATACAACAAAAATTTTTGCTCGGAGTCCCCCTTTAAACTTCCTGAAGAGTAGGACGATGCATCATGTCGGATGTTTAAAGGCGCATATCTAGCTTCAAAATTGAGATAGAAAAATGAAAGTTATACCATTTTGTAGATAATTTAAACGGCTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACTCCGTTTTTAGTTGATT</pcr_primer_p1>
		<pcr_primer_p2>CTCACTGAAAATCGATATCCTC</pcr_primer_p2>
		<pcr_amplicon_size>443</pcr_amplicon_size>
		<canonical_amplicon>GAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAAAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAG</canonical_amplicon>
		<polymorphic_amplicon>GAAACTCCGTTTTTAGTTGATTTTTTGAAGGGTGTAAAACAGACCTAGATTGAAAACTTTGAATTCACAGAATTTTTCTAAAATTTCTAGTTTTTCAGCTTTTTGCCGATACCTTTTTTGGTCTGTTTTTGTACGGAAAACGTTAAAAAAACGGGTGTGTTTCAGAAATTGGTAATTCAGAGCACATAAAATTTTTACAAATTGATTAAAAATTCCATAAAATTCCATTTTCTACTAAAAATTTTTGAAAAGAGTTATGCGCCTTTAAAGGGGGACTCCTGTCAATTTTTTTATTGCATCAACATGTGTTAAAATTCATCTATTTTCAGAATATTATTGCGAAAAAATTCGAAAAAAATCCGAAATCCCCAAAAAACGCCGTTGAAAAARAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATATCGATTTTCAGTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27951</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>182507</contig_pos>
        <strand>+</strand>
        <context>TTCAAAAATT[C/T]TGMARATTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTACAAGTATGATTTTCAGGAATTACCGTATTTGGGAACTTTCAAAAATT</left_flank>
        <right_flank>TGAAAATTTATAAATTTCAGAAATTTTGGATTTCTGAGTTTCTGAAGGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGCCGGATTCCAGTAGGATAACATGTCCAAGAGTCTATTTGAATGACAAAAAAACTACTTTTTATCAAATTGGTTGAAAATTGTCATTCAAAAATATTTTTCGACATGTTACCGGACCGGAATCCGGCTTGAATGATATAGACGTAATGGGTCCTGCCGAGACCTATCATTTGGTACCAAAACCGTCTGAATATCTCGTTCTAGGGGAAAAGTTATCAGCCGGTCCGCTTGCAAGCAAGCTCTCAATATAATTTTATCCATTTTTTTTTGTTTTTTTTTTTTGGATGGTTTGTCTGTTTGATCTAAAAAGATTAAAAAACTCGGAAAATTTTTTGATCGAAAAAAAATCACATAAGGGTTAAAACCCCCTTATTTGTTTTTTGAAAATTTCAAAACTTGTGAAATGACGTGCCCGGCTCCAAAGCCCGGCCCGGCCCGGCCCGGCCCGTTACAAGTATGATTTTCAGGAATTACCGTATTTGGGAACTTTCAAAAATTTTGAAAATTTATAAATTTCAGAAATTTTGGATTTCTGAGTTTCTGAAGGTTGAAAAAACTTGAATTGTTGAATTTTTCAAACAAACGACGTTTTGGAATTCTCAAAATTTCAAAATTTTCGCCGAACCGTAATTTCGAGGTTATTCCATTTCAGACGAACGATTTCAACGCGTTTTTTTTCAAATTTTTCATGAATTTTGTATCTTTTTCACTATTTCCTATGAAATTTCATGACGTTTTGGCCAATATTCGGCTTATTTCCAACCAAATTTTCGACTTTTTCGTCCCCGCACCTTCAACTCGAACTCCTCTGTACAACACACGACTCCGCCCACATTCTCCTTCCCGATCAGCTCATTTTTCATCGATTGAAATGGCATTGCGCCGAGGATCAGTGTGTCATCAACACGATTGTACCACGCCCAACGGGATCCTTGCACATAATTTCTGAATAGATTATAGCCAAGTGACGGATAGAATACCAGTGATGTTAGCATGTTT</canonical>
            <polymorphic>GAGCCGGATTCCAGTAGGATAACATGTCCAAGAGTCTATTTGAATGACAAAAAAACTACTTTTTATCAAATTGGTTGAAAATTGTCATTCAAAAATATTTTTCGACATGTTACCGGACCGGAATCCGGCTTGAATGATATAGACGTAATGGGTCCTGCCGAGACCTATCATTTGGTACCAAAACCGTCTGAATATCTCGTTCTAGGGGAAAAGTTATCAGCCGGTCCGCTTGCAAGCAAGCTCTCAATATAATTTTATCCATTTTTTTTTGTTTTTTTTTTTTGGATGGTTTGTCTGTTTGATCTAAAAAGATTAAAAAACTCGGAAAATTTTTTGATCGAAAAAAAATCACATAAGGGTTAAAACCCCCTTATTTGTTTTTTGAAAATTTCAAAACTTGTGAAATGACGTGCCCGGCTCCAAAGCCCGGCCCGGCCCGGCCCGGCCCGTTACAAGTATGATTTTCAGGAATTACCGTATTTGGGAACTTTCAAAAATTYTGAAAATTTATAAATTTCAGAAATTTTGGATTTCTGAGTTTCTGAAGGTTGAAAAAACTTGAATTGTTGAATTTTTCAAACAAACGACGTTTTGGAATTCTCAAAATTTCAAAATTTTCGCCGAACCGTAATTTCGAGGTTATTCCATTTCAGACGAACGATTTCAACGCGTTTTTTTTCAAATTTTTCATGAATTTTGTATCTTTTTCACTATTTCCTATGAAATTTCATGACGTTTTGGCCAATATTCGGCTTATTTCCAACCAAATTTTCGACTTTTTCGTCCCCGCACCTTCAACTCGAACTCCTCTGTACAACACACGACTCCGCCCACATTCTCCTTCCCGATCAGCTCATTTTTCATCGATTGAAATGGCATTGCGCCGAGGATCAGTGTGTCATCAACACGATTGTACCACGCCCAACGGGATCCTTGCACATAATTTCTGAATAGATTATAGCCAAGTGACGGATAGAATACCAGTGATGTTAGCATGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>327 234 109 69 59 48 43 31 26 11 9 9 9 8 8</canonical_bands>
                <polymorphic_bands>327 234 118 69 59 48 43 31 26 11 9 9 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAGGGTTAAAACCCCCTTAT</pcr_primer_p1>
		<pcr_primer_p2>TTGAAAAATTCAACAATTCAAGT</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>TAAGGGTTAAAACCCCCTTATTTGTTTTTTGAAAATTTCAAAACTTGTGAAATGACGTGCCCGGCTCCAAAGCCCGGCCCGGCCCGGCCCGGCCCGTTACAAGTATGATTTTCAGGAATTACCGTATTTGGGAACTTTCAAAAATTTTGAAAATTTATAAATTTCAGAAATTTTGGATTTCTGAGTTTCTGAAGGTTGAAAAAACTTGAATTGTTGAATTTTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TAAGGGTTAAAACCCCCTTATTTGTTTTTTGAAAATTTCAAAACTTGTGAAATGACGTGCCCGGCTCCAAAGCCCGGCCCGGCCCGGCCCGGCCCGTTACAAGTATGATTTTCAGGAATTACCGTATTTGGGAACTTTCAAAAATTYTGAAAATTTATAAATTTCAGAAATTTTGGATTTCTGAGTTTCTGAAGGTTGAAAAAACTTGAATTGTTGAATTTTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27952</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>182510</contig_pos>
        <strand>+</strand>
        <context>AAAAATTYTG[A/C]ARATTTATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAAGTATGATTTTCAGGAATTACCGTATTTGGGAACTTTCAAAAATTTTG</left_flank>
        <right_flank>AAATTTATAAATTTCAGAAATTTTGGATTTCTGAGTTTCTGAAGGTTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGGATTCCAGTAGGATAACATGTCCAAGAGTCTATTTGAATGACAAAAAAACTACTTTTTATCAAATTGGTTGAAAATTGTCATTCAAAAATATTTTTCGACATGTTACCGGACCGGAATCCGGCTTGAATGATATAGACGTAATGGGTCCTGCCGAGACCTATCATTTGGTACCAAAACCGTCTGAATATCTCGTTCTAGGGGAAAAGTTATCAGCCGGTCCGCTTGCAAGCAAGCTCTCAATATAATTTTATCCATTTTTTTTTGTTTTTTTTTTTTGGATGGTTTGTCTGTTTGATCTAAAAAGATTAAAAAACTCGGAAAATTTTTTGATCGAAAAAAAATCACATAAGGGTTAAAACCCCCTTATTTGTTTTTTGAAAATTTCAAAACTTGTGAAATGACGTGCCCGGCTCCAAAGCCCGGCCCGGCCCGGCCCGGCCCGTTACAAGTATGATTTTCAGGAATTACCGTATTTGGGAACTTTCAAAAATTTTGAAAATTTATAAATTTCAGAAATTTTGGATTTCTGAGTTTCTGAAGGTTGAAAAAACTTGAATTGTTGAATTTTTCAAACAAACGACGTTTTGGAATTCTCAAAATTTCAAAATTTTCGCCGAACCGTAATTTCGAGGTTATTCCATTTCAGACGAACGATTTCAACGCGTTTTTTTTCAAATTTTTCATGAATTTTGTATCTTTTTCACTATTTCCTATGAAATTTCATGACGTTTTGGCCAATATTCGGCTTATTTCCAACCAAATTTTCGACTTTTTCGTCCCCGCACCTTCAACTCGAACTCCTCTGTACAACACACGACTCCGCCCACATTCTCCTTCCCGATCAGCTCATTTTTCATCGATTGAAATGGCATTGCGCCGAGGATCAGTGTGTCATCAACACGATTGTACCACGCCCAACGGGATCCTTGCACATAATTTCTGAATAGATTATAGCCAAGTGACGGATAGAATACCAGTGATGTTAGCATGTTTTCT</canonical>
            <polymorphic>CCGGATTCCAGTAGGATAACATGTCCAAGAGTCTATTTGAATGACAAAAAAACTACTTTTTATCAAATTGGTTGAAAATTGTCATTCAAAAATATTTTTCGACATGTTACCGGACCGGAATCCGGCTTGAATGATATAGACGTAATGGGTCCTGCCGAGACCTATCATTTGGTACCAAAACCGTCTGAATATCTCGTTCTAGGGGAAAAGTTATCAGCCGGTCCGCTTGCAAGCAAGCTCTCAATATAATTTTATCCATTTTTTTTTGTTTTTTTTTTTTGGATGGTTTGTCTGTTTGATCTAAAAAGATTAAAAAACTCGGAAAATTTTTTGATCGAAAAAAAATCACATAAGGGTTAAAACCCCCTTATTTGTTTTTTGAAAATTTCAAAACTTGTGAAATGACGTGCCCGGCTCCAAAGCCCGGCCCGGCCCGGCCCGGCCCGTTACAAGTATGATTTTCAGGAATTACCGTATTTGGGAACTTTCAAAAATTTTGMAAATTTATAAATTTCAGAAATTTTGGATTTCTGAGTTTCTGAAGGTTGAAAAAACTTGAATTGTTGAATTTTTCAAACAAACGACGTTTTGGAATTCTCAAAATTTCAAAATTTTCGCCGAACCGTAATTTCGAGGTTATTCCATTTCAGACGAACGATTTCAACGCGTTTTTTTTCAAATTTTTCATGAATTTTGTATCTTTTTCACTATTTCCTATGAAATTTCATGACGTTTTGGCCAATATTCGGCTTATTTCCAACCAAATTTTCGACTTTTTCGTCCCCGCACCTTCAACTCGAACTCCTCTGTACAACACACGACTCCGCCCACATTCTCCTTCCCGATCAGCTCATTTTTCATCGATTGAAATGGCATTGCGCCGAGGATCAGTGTGTCATCAACACGATTGTACCACGCCCAACGGGATCCTTGCACATAATTTCTGAATAGATTATAGCCAAGTGACGGATAGAATACCAGTGATGTTAGCATGTTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGGGTTAAAACCCCCTTAT</pcr_primer_p1>
		<pcr_primer_p2>TTGAAAAATTCAACAATTCAAGT</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>TAAGGGTTAAAACCCCCTTATTTGTTTTTTGAAAATTTCAAAACTTGTGAAATGACGTGCCCGGCTCCAAAGCCCGGCCCGGCCCGGCCCGGCCCGTTACAAGTATGATTTTCAGGAATTACCGTATTTGGGAACTTTCAAAAATTTTGAAAATTTATAAATTTCAGAAATTTTGGATTTCTGAGTTTCTGAAGGTTGAAAAAACTTGAATTGTTGAATTTTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TAAGGGTTAAAACCCCCTTATTTGTTTTTTGAAAATTTCAAAACTTGTGAAATGACGTGCCCGGCTCCAAAGCCCGGCCCGGCCCGGCCCGGCCCGTTACAAGTATGATTTTCAGGAATTACCGTATTTGGGAACTTTCAAAAATTTTGMAAATTTATAAATTTCAGAAATTTTGGATTTCTGAGTTTCTGAAGGTTGAAAAAACTTGAATTGTTGAATTTTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27953</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>182512</contig_pos>
        <strand>+</strand>
        <context>AAATTYTGMA[A/G]ATTTATAAMT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTATGATTTTCAGGAATTACCGTATTTGGGAACTTTCAAAAATTTTGAA</left_flank>
        <right_flank>ATTTATAAATTTCAGAAATTTTGGATTTCTGAGTTTCTGAAGGTTGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATTCCAGTAGGATAACATGTCCAAGAGTCTATTTGAATGACAAAAAAACTACTTTTTATCAAATTGGTTGAAAATTGTCATTCAAAAATATTTTTCGACATGTTACCGGACCGGAATCCGGCTTGAATGATATAGACGTAATGGGTCCTGCCGAGACCTATCATTTGGTACCAAAACCGTCTGAATATCTCGTTCTAGGGGAAAAGTTATCAGCCGGTCCGCTTGCAAGCAAGCTCTCAATATAATTTTATCCATTTTTTTTTGTTTTTTTTTTTTGGATGGTTTGTCTGTTTGATCTAAAAAGATTAAAAAACTCGGAAAATTTTTTGATCGAAAAAAAATCACATAAGGGTTAAAACCCCCTTATTTGTTTTTTGAAAATTTCAAAACTTGTGAAATGACGTGCCCGGCTCCAAAGCCCGGCCCGGCCCGGCCCGGCCCGTTACAAGTATGATTTTCAGGAATTACCGTATTTGGGAACTTTCAAAAATTTTGAAAATTTATAAATTTCAGAAATTTTGGATTTCTGAGTTTCTGAAGGTTGAAAAAACTTGAATTGTTGAATTTTTCAAACAAACGACGTTTTGGAATTCTCAAAATTTCAAAATTTTCGCCGAACCGTAATTTCGAGGTTATTCCATTTCAGACGAACGATTTCAACGCGTTTTTTTTCAAATTTTTCATGAATTTTGTATCTTTTTCACTATTTCCTATGAAATTTCATGACGTTTTGGCCAATATTCGGCTTATTTCCAACCAAATTTTCGACTTTTTCGTCCCCGCACCTTCAACTCGAACTCCTCTGTACAACACACGACTCCGCCCACATTCTCCTTCCCGATCAGCTCATTTTTCATCGATTGAAATGGCATTGCGCCGAGGATCAGTGTGTCATCAACACGATTGTACCACGCCCAACGGGATCCTTGCACATAATTTCTGAATAGATTATAGCCAAGTGACGGATAGAATACCAGTGATGTTAGCATGTTTTCTGA</canonical>
            <polymorphic>GGATTCCAGTAGGATAACATGTCCAAGAGTCTATTTGAATGACAAAAAAACTACTTTTTATCAAATTGGTTGAAAATTGTCATTCAAAAATATTTTTCGACATGTTACCGGACCGGAATCCGGCTTGAATGATATAGACGTAATGGGTCCTGCCGAGACCTATCATTTGGTACCAAAACCGTCTGAATATCTCGTTCTAGGGGAAAAGTTATCAGCCGGTCCGCTTGCAAGCAAGCTCTCAATATAATTTTATCCATTTTTTTTTGTTTTTTTTTTTTGGATGGTTTGTCTGTTTGATCTAAAAAGATTAAAAAACTCGGAAAATTTTTTGATCGAAAAAAAATCACATAAGGGTTAAAACCCCCTTATTTGTTTTTTGAAAATTTCAAAACTTGTGAAATGACGTGCCCGGCTCCAAAGCCCGGCCCGGCCCGGCCCGGCCCGTTACAAGTATGATTTTCAGGAATTACCGTATTTGGGAACTTTCAAAAATTTTGAARATTTATAAATTTCAGAAATTTTGGATTTCTGAGTTTCTGAAGGTTGAAAAAACTTGAATTGTTGAATTTTTCAAACAAACGACGTTTTGGAATTCTCAAAATTTCAAAATTTTCGCCGAACCGTAATTTCGAGGTTATTCCATTTCAGACGAACGATTTCAACGCGTTTTTTTTCAAATTTTTCATGAATTTTGTATCTTTTTCACTATTTCCTATGAAATTTCATGACGTTTTGGCCAATATTCGGCTTATTTCCAACCAAATTTTCGACTTTTTCGTCCCCGCACCTTCAACTCGAACTCCTCTGTACAACACACGACTCCGCCCACATTCTCCTTCCCGATCAGCTCATTTTTCATCGATTGAAATGGCATTGCGCCGAGGATCAGTGTGTCATCAACACGATTGTACCACGCCCAACGGGATCCTTGCACATAATTTCTGAATAGATTATAGCCAAGTGACGGATAGAATACCAGTGATGTTAGCATGTTTTCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>322 239 109 69 59 48 43 31 26 11 9 9 9 8 8</canonical_bands>
                <polymorphic_bands>322 239 109 69 59 48 43 31 26 17 11 9 9 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>175 171 83 77 64 63 59 52 43 40 31 26 26 17 11 11 9 9 9 8 8 8</canonical_bands>
                <polymorphic_bands>175 171 83 77 64 63 59 52 43 40 31 26 26 17 17 11 11 9 9 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAGGGTTAAAACCCCCTTAT</pcr_primer_p1>
		<pcr_primer_p2>TTGAAAAATTCAACAATTCAAGT</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>TAAGGGTTAAAACCCCCTTATTTGTTTTTTGAAAATTTCAAAACTTGTGAAATGACGTGCCCGGCTCCAAAGCCCGGCCCGGCCCGGCCCGGCCCGTTACAAGTATGATTTTCAGGAATTACCGTATTTGGGAACTTTCAAAAATTTTGAAAATTTATAAATTTCAGAAATTTTGGATTTCTGAGTTTCTGAAGGTTGAAAAAACTTGAATTGTTGAATTTTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TAAGGGTTAAAACCCCCTTATTTGTTTTTTGAAAATTTCAAAACTTGTGAAATGACGTGCCCGGCTCCAAAGCCCGGCCCGGCCCGGCCCGGCCCGTTACAAGTATGATTTTCAGGAATTACCGTATTTGGGAACTTTCAAAAATTTTGAARATTTATAAATTTCAGAAATTTTGGATTTCTGAGTTTCTGAAGGTTGAAAAAACTTGAATTGTTGAATTTTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27954</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>257081</contig_pos>
        <strand>+</strand>
        <context>TCACTTTTCA[C/T]TCTGATGACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAAGAGAACTTTTTTTTGACATATCCGTATATTTTTTTCACTTTTCA</left_flank>
        <right_flank>TCTGATGACAAATTTTTAAATGTTTTTGAGACGAAAGTTTTTCTTTTTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATTTAGCTCAAAGTCCAAGTGTAGGGTCCGTAAACAGTAGTAGAAAGATTCCCTAACTTTTAACTTTTAACTCTATTATCTCGGTTCCTATAAGAATGATAAAAAATCTGTCAACTGATAAAATATTTTTGATAATATCACCAACATTTTATCAATTGACAAATTTTTGATATCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTTTTTCCGATCGCCTAAATTATGACCAATGAAGATTTTTCTCTCTCCCAAAGGATCCTCGACAAATAGTCCACTCATTTTTGTTCCTCGCTCCTCCTTGTTCCTTTCTTCGCTTTTCTTAGTTTTTCTTCTGTCCTGTTTATGTCAAAAATAGAATAACAAAACCACTTTTCTCCTCTGTCGTCATCTCGCTTTTTTCTCAATTTTTAGACTAAAAGCTCTTCCGAAAAAAAGAGAACTTTTTTTTGACATATCCGTATATTTTTTTCACTTTTCACTCTGATGACAAATTTTTAAATGTTTTTGAGACGAAAGTTTTTCTTTTTGGTTTTCCGCTTGAATTGTGTCATTTTTTACTTCTTTTTTGAAGAAAAACACAAAAGTGGTTTTTGTTTTAATTTTTGATTGAATTCCCGATTCTTGAGATTTGAAAAACAATGAAGATGAATCCTATAATTAAATTTGCCAAAGTTTAGAATATCAAAATTTCAGAATTTCTAAATTCTAGAACTTTTTGTTCCTATTCTTGAATTTTCTGATTTTCTAATTTTGTTTTCTGACTTCTGAAAAAAGGAACAAAGTCAAAACAGCAATTTTGAGAATTTCGGTTTTTGTTGTTCGAATATTGCTTTCAAATCGGAAATTCTGAAGCACATATACTAGCTTTTTAAAACCGATAACTTTCTAAGAATTAGAAATATTCGAAATTTTCGAATACTTTCAGATGTTTTTTTAGTTTTTCAGGTTTTTGAGATTTTTTGACATTTTCAGGCAACTA</canonical>
            <polymorphic>TAATTTAGCTCAAAGTCCAAGTGTAGGGTCCGTAAACAGTAGTAGAAAGATTCCCTAACTTTTAACTTTTAACTCTATTATCTCGGTTCCTATAAGAATGATAAAAAATCTGTCAACTGATAAAATATTTTTGATAATATCACCAACATTTTATCAATTGACAAATTTTTGATATCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTTTTTCCGATCGCCTAAATTATGACCAATGAAGATTTTTCTCTCTCCCAAAGGATCCTCGACAAATAGTCCACTCATTTTTGTTCCTCGCTCCTCCTTGTTCCTTTCTTCGCTTTTCTTAGTTTTTCTTCTGTCCTGTTTATGTCAAAAATAGAATAACAAAACCACTTTTCTCCTCTGTCGTCATCTCGCTTTTTTCTCAATTTTTAGACTAAAAGCTCTTCCGAAAAAAAGAGAACTTTTTTTTGACATATCCGTATATTTTTTTCACTTTTCAYTCTGATGACAAATTTTTAAATGTTTTTGAGACGAAAGTTTTTCTTTTTGGTTTTCCGCTTGAATTGTGTCATTTTTTACTTCTTTTTTGAAGAAAAACACAAAAGTGGTTTTTGTTTTAATTTTTGATTGAATTCCCGATTCTTGAGATTTGAAAAACAATGAAGATGAATCCTATAATTAAATTTGCCAAAGTTTAGAATATCAAAATTTCAGAATTTCTAAATTCTAGAACTTTTTGTTCCTATTCTTGAATTTTCTGATTTTCTAATTTTGTTTTCTGACTTCTGAAAAAAGGAACAAAGTCAAAACAGCAATTTTGAGAATTTCGGTTTTTGTTGTTCGAATATTGCTTTCAAATCGGAAATTCTGAAGCACATATACTAGCTTTTTAAAACCGATAACTTTCTAAGAATTAGAAATATTCGAAATTTTCGAATACTTTCAGATGTTTTTTTAGTTTTTCAGGTTTTTGAGATTTTTTGACATTTTCAGGCAACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>268 125 119 114 103 94 69 39 31 23 8 7</canonical_bands>
                <polymorphic_bands>268 125 119 114 103 94 76 39 31 23 8</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>502 398 100</canonical_bands>
                <polymorphic_bands>602 398</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAACAAAACCACTTTTCTCCTC</pcr_primer_p1>
		<pcr_primer_p2>TCAAAAATTAAAACAAAAACCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAACAAAACCACTTTTCTCCTCTGTCGTCATCTCGCTTTTTTCTCAATTTTTAGACTAAAAGCTCTTCCGAAAAAAAGAGAACTTTTTTTTGACATATCCGTATATTTTTTTCACTTTTCACTCTGATGACAAATTTTTAAATGTTTTTGAGACGAAAGTTTTTCTTTTTGGTTTTCCGCTTGAATTGTGTCATTTTTTACTTCTTTTTTGAAGAAAAACACAAAAGTGGTTTTTGTTTTAATTTTTGA</canonical_amplicon>
		<polymorphic_amplicon>ATAACAAAACCACTTTTCTCCTCTGTCGTCATCTCGCTTTTTTCTCAATTTTTAGACTAAAAGCTCTTCCGAAAAAAAGAGAACTTTTTTTTGACATATCCGTATATTTTTTTCACTTTTCAYTCTGATGACAAATTTTTAAATGTTTTTGAGACGAAAGTTTTTCTTTTTGGTTTTCCGCTTGAATTGTGTCATTTTTTACTTCTTTTTTGAAGAAAAACACAAAAGTGGTTTTTGTTTTAATTTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27955</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>257169</contig_pos>
        <strand>+</strand>
        <context>ACTTCTTTTT[C/T]GAAGAAAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTCTTTTTGGTTTTCCGCTTGAATTGTGTCATTTTTTACTTCTTTTT</left_flank>
        <right_flank>GAAGAAAAACACAAAAGTGGTTTTTGTTTTAATTTTTGATTGAATTCCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTATAAGAATGATAAAAAATCTGTCAACTGATAAAATATTTTTGATAATATCACCAACATTTTATCAATTGACAAATTTTTGATATCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTTTTTCCGATCGCCTAAATTATGACCAATGAAGATTTTTCTCTCTCCCAAAGGATCCTCGACAAATAGTCCACTCATTTTTGTTCCTCGCTCCTCCTTGTTCCTTTCTTCGCTTTTCTTAGTTTTTCTTCTGTCCTGTTTATGTCAAAAATAGAATAACAAAACCACTTTTCTCCTCTGTCGTCATCTCGCTTTTTTCTCAATTTTTAGACTAAAAGCTCTTCCGAAAAAAAGAGAACTTTTTTTTGACATATCCGTATATTTTTTTCACTTTTCACTCTGATGACAAATTTTTAAATGTTTTTGAGACGAAAGTTTTTCTTTTTGGTTTTCCGCTTGAATTGTGTCATTTTTTACTTCTTTTTTGAAGAAAAACACAAAAGTGGTTTTTGTTTTAATTTTTGATTGAATTCCCGATTCTTGAGATTTGAAAAACAATGAAGATGAATCCTATAATTAAATTTGCCAAAGTTTAGAATATCAAAATTTCAGAATTTCTAAATTCTAGAACTTTTTGTTCCTATTCTTGAATTTTCTGATTTTCTAATTTTGTTTTCTGACTTCTGAAAAAAGGAACAAAGTCAAAACAGCAATTTTGAGAATTTCGGTTTTTGTTGTTCGAATATTGCTTTCAAATCGGAAATTCTGAAGCACATATACTAGCTTTTTAAAACCGATAACTTTCTAAGAATTAGAAATATTCGAAATTTTCGAATACTTTCAGATGTTTTTTTAGTTTTTCAGGTTTTTGAGATTTTTTGACATTTTCAGGCAACTAAAAATTACAAATTCAAAATAATTGGAAATTAAAAGTTTCAGTTTTAGAGTCGAAAATGTGAAAAATTAGGAAATTTTCAAAACTTTAC</canonical>
            <polymorphic>CCTATAAGAATGATAAAAAATCTGTCAACTGATAAAATATTTTTGATAATATCACCAACATTTTATCAATTGACAAATTTTTGATATCTTTCACAGGAATTGAGATAATTCAGTTCGAAGTTGACAGTTGTTATTTTTTTCCGATCGCCTAAATTATGACCAATGAAGATTTTTCTCTCTCCCAAAGGATCCTCGACAAATAGTCCACTCATTTTTGTTCCTCGCTCCTCCTTGTTCCTTTCTTCGCTTTTCTTAGTTTTTCTTCTGTCCTGTTTATGTCAAAAATAGAATAACAAAACCACTTTTCTCCTCTGTCGTCATCTCGCTTTTTTCTCAATTTTTAGACTAAAAGCTCTTCCGAAAAAAAGAGAACTTTTTTTTGACATATCCGTATATTTTTTTCACTTTTCACTCTGATGACAAATTTTTAAATGTTTTTGAGACGAAAGTTTTTCTTTTTGGTTTTCCGCTTGAATTGTGTCATTTTTTACTTCTTTTTYGAAGAAAAACACAAAAGTGGTTTTTGTTTTAATTTTTGATTGAATTCCCGATTCTTGAGATTTGAAAAACAATGAAGATGAATCCTATAATTAAATTTGCCAAAGTTTAGAATATCAAAATTTCAGAATTTCTAAATTCTAGAACTTTTTGTTCCTATTCTTGAATTTTCTGATTTTCTAATTTTGTTTTCTGACTTCTGAAAAAAGGAACAAAGTCAAAACAGCAATTTTGAGAATTTCGGTTTTTGTTGTTCGAATATTGCTTTCAAATCGGAAATTCTGAAGCACATATACTAGCTTTTTAAAACCGATAACTTTCTAAGAATTAGAAATATTCGAAATTTTCGAATACTTTCAGATGTTTTTTTAGTTTTTCAGGTTTTTGAGATTTTTTGACATTTTCAGGCAACTAAAAATTACAAATTCAAAATAATTGGAAATTAAAAGTTTCAGTTTTAGAGTCGAAAATGTGAAAAATTAGGAAATTTTCAAAACTTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAAATGTTTTTGAGACGAAAG</pcr_primer_p1>
		<pcr_primer_p2>CAGAAAATTCAAGAATAGGAACA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTAAATGTTTTTGAGACGAAAGTTTTTCTTTTTGGTTTTCCGCTTGAATTGTGTCATTTTTTACTTCTTTTTTGAAGAAAAACACAAAAGTGGTTTTTGTTTTAATTTTTGATTGAATTCCCGATTCTTGAGATTTGAAAAACAATGAAGATGAATCCTATAATTAAATTTGCCAAAGTTTAGAATATCAAAATTTCAGAATTTCTAAATTCTAGAACTTTTTGTTCCTATTCTTGAATTTTCTG</canonical_amplicon>
		<polymorphic_amplicon>TTTAAATGTTTTTGAGACGAAAGTTTTTCTTTTTGGTTTTCCGCTTGAATTGTGTCATTTTTTACTTCTTTTTYGAAGAAAAACACAAAAGTGGTTTTTGTTTTAATTTTTGATTGAATTCCCGATTCTTGAGATTTGAAAAACAATGAAGATGAATCCTATAATTAAATTTGCCAAAGTTTAGAATATCAAAATTTCAGAATTTCTAAATTCTAGAACTTTTTGTTCCTATTCTTGAATTTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27956</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>283265</contig_pos>
        <strand>+</strand>
        <context>AAAAATTCGY[C/T]CTTGTCTGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACTAATTAAAGGAACACACTCTCAAAAAAGGAATTACTTAAAAATTCGT</left_flank>
        <right_flank>CTTGTCTGGAAAGAGCGTCCGGGCGGTTTGGTTGACTGTAAGTGGGGACG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTAAAATTGAGAGAACTCAAAATACTGACATGAAAAACTTGAATAAATGGTTTATAAGTGTTTTCATTTTTTGAATTTTTAAGTATTTGAAACTCAATTATAAATCAATAAACTGGAGAAATAAAAATGTGTTTATATAAAAATTTAAAAATTTCAATCAATGCATAAATAAAATAATAAATGATATCATATCACAGAATGAAAGACGATTTTTAGAGATTTGCGTAATTAGGATGAGGATAATTAAAATAATTAAGAAGACAATTAAGTATTAAATTGAAAATAAATTATTCAGTTGGTCTTTGTACACTTTTTTGACTAGCATTGGGAATTCAGCTATACGGATTTCAGCACCAACTACACGGTGTCTAGGAGGACTCTTCTAGAAAAAGAAAGTCAAAGAATATTGAGCATTTTGGAATGAGTTAGGGGGATGGAGAGGTAAAAACTAATTAAAGGAACACACTCTCAAAAAAGGAATTACTTAAAAATTCGTCCTTGTCTGGAAAGAGCGTCCGGGCGGTTTGGTTGACTGTAAGTGGGGACGTTGTAGTTGACTGGTTCGACGTCTGGACGATAGGCTGATGGAGAACCCTGGAAATTACGAATTCAGTATTTTTTTTTGAATTATTGAAAATTTCAAAAGTATCAAATGGATCTGTGAAAGTTTCTAAACTTCAGAAAAATTCCGAAGTTTGGAAATAATGGGACTATCAGCATAAAGTTAATGTATCTGAGTTACTGTAAGAGATACCAAAAAGGTGTCAATTGACAAAATGGTTATCATAATATTACCAACATTTTACCAGTTGACACATTTTTGATATCTCTCAAATGCACCGAGATAAGTTGACTCAAAGTTAGGTGTACCGTATTTCCTCCTACCATAGGAATTGAGATAATTAAGGTCAAATTTGACAGTGTGGGCACATTTCTATTGAAGTTTTATATCTTCTCTTGTCTCTGTCTTTTATGTCGTCTTTTCGTCTTTAGTGGG</canonical>
            <polymorphic>TGTTTAAAATTGAGAGAACTCAAAATACTGACATGAAAAACTTGAATAAATGGTTTATAAGTGTTTTCATTTTTTGAATTTTTAAGTATTTGAAACTCAATTATAAATCAATAAACTGGAGAAATAAAAATGTGTTTATATAAAAATTTAAAAATTTCAATCAATGCATAAATAAAATAATAAATGATATCATATCACAGAATGAAAGACGATTTTTAGAGATTTGCGTAATTAGGATGAGGATAATTAAAATAATTAAGAAGACAATTAAGTATTAAATTGAAAATAAATTATTCAGTTGGTCTTTGTACACTTTTTTGACTAGCATTGGGAATTCAGCTATACGGATTTCAGCACCAACTACACGGTGTCTAGGAGGACTCTTCTAGAAAAAGAAAGTCAAAGAATATTGAGCATTTTGGAATGAGTTAGGGGGATGGAGAGGTAAAAACTAATTAAAGGAACACACTCTCAAAAAAGGAATTACTTAAAAATTCGTYCTTGTCTGGAAAGAGCGTCCGGGCGGTTTGGTTGACTGTAAGTGGGGACGTTGTAGTTGACTGGTTCGACGTCTGGACGATAGGCTGATGGAGAACCCTGGAAATTACGAATTCAGTATTTTTTTTTGAATTATTGAAAATTTCAAAAGTATCAAATGGATCTGTGAAAGTTTCTAAACTTCAGAAAAATTCCGAAGTTTGGAAATAATGGGACTATCAGCATAAAGTTAATGTATCTGAGTTACTGTAAGAGATACCAAAAAGGTGTCAATTGACAAAATGGTTATCATAATATTACCAACATTTTACCAGTTGACACATTTTTGATATCTCTCAAATGCACCGAGATAAGTTGACTCAAAGTTAGGTGTACCGTATTTCCTCCTACCATAGGAATTGAGATAATTAAGGTCAAATTTGACAGTGTGGGCACATTTCTATTGAAGTTTTATATCTTCTCTTGTCTCTGTCTTTTATGTCGTCTTTTCGTCTTTAGTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGATGGAGAGGTAAAAACTA</pcr_primer_p1>
		<pcr_primer_p2>TAGAAACTTTCACAGATCCATTT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GGGATGGAGAGGTAAAAACTAATTAAAGGAACACACTCTCAAAAAAGGAATTACTTAAAAATTCGTCCTTGTCTGGAAAGAGCGTCCGGGCGGTTTGGTTGACTGTAAGTGGGGACGTTGTAGTTGACTGGTTCGACGTCTGGACGATAGGCTGATGGAGAACCCTGGAAATTACGAATTCAGTATTTTTTTTTGAATTATTGAAAATTTCAAAAGTATCAAATGGATCTGTGAAAGTTTCTA</canonical_amplicon>
		<polymorphic_amplicon>GGGATGGAGAGGTAAAAACTAATTAAAGGAACACACTCTCAAAAAAGGAATTACTTAAAAATTCGTYCTTGTCTGGAAAGAGCGTCCGGGCGGTTTGGTTGACTGTAAGTGGGGACGTTGTAGTTGACTGGTTCGACGTCTGGACGATAGGCTGATGGAGAACCCTGGAAATTACGAATTCAGTATTTTTTTTTGAATTATTGAAAATTTCAAAAGTATCAAATGGATCTGTGAAAGTTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27957</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>283401</contig_pos>
        <strand>+</strand>
        <context>TTGAATTATT[A/G]AAAATTTCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATGGAGAACCCTGGAAATTACGAATTCAGTATTTTTTTTTGAATTATT</left_flank>
        <right_flank>AAAATTTCAAAAGTATCAAATGGATCTGTGAAAGTTTCTAAACTTCAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATATAAAAATTTAAAAATTTCAATCAATGCATAAATAAAATAATAAATGATATCATATCACAGAATGAAAGACGATTTTTAGAGATTTGCGTAATTAGGATGAGGATAATTAAAATAATTAAGAAGACAATTAAGTATTAAATTGAAAATAAATTATTCAGTTGGTCTTTGTACACTTTTTTGACTAGCATTGGGAATTCAGCTATACGGATTTCAGCACCAACTACACGGTGTCTAGGAGGACTCTTCTAGAAAAAGAAAGTCAAAGAATATTGAGCATTTTGGAATGAGTTAGGGGGATGGAGAGGTAAAAACTAATTAAAGGAACACACTCTCAAAAAAGGAATTACTTAAAAATTCGTCCTTGTCTGGAAAGAGCGTCCGGGCGGTTTGGTTGACTGTAAGTGGGGACGTTGTAGTTGACTGGTTCGACGTCTGGACGATAGGCTGATGGAGAACCCTGGAAATTACGAATTCAGTATTTTTTTTTGAATTATTGAAAATTTCAAAAGTATCAAATGGATCTGTGAAAGTTTCTAAACTTCAGAAAAATTCCGAAGTTTGGAAATAATGGGACTATCAGCATAAAGTTAATGTATCTGAGTTACTGTAAGAGATACCAAAAAGGTGTCAATTGACAAAATGGTTATCATAATATTACCAACATTTTACCAGTTGACACATTTTTGATATCTCTCAAATGCACCGAGATAAGTTGACTCAAAGTTAGGTGTACCGTATTTCCTCCTACCATAGGAATTGAGATAATTAAGGTCAAATTTGACAGTGTGGGCACATTTCTATTGAAGTTTTATATCTTCTCTTGTCTCTGTCTTTTATGTCGTCTTTTCGTCTTTAGTGGGGTTATTCATGTAGCAAAACTCTGTATTGATTTTTTAAATCCTTCACAAAGTTTAAAGGCGCATCCCTTTTTCCAGAAAAAATATCTCGCCACGCGATGTATTTCAATGCGTTTACAGTTATGTCGCGAAATGCTTT</canonical>
            <polymorphic>TATATAAAAATTTAAAAATTTCAATCAATGCATAAATAAAATAATAAATGATATCATATCACAGAATGAAAGACGATTTTTAGAGATTTGCGTAATTAGGATGAGGATAATTAAAATAATTAAGAAGACAATTAAGTATTAAATTGAAAATAAATTATTCAGTTGGTCTTTGTACACTTTTTTGACTAGCATTGGGAATTCAGCTATACGGATTTCAGCACCAACTACACGGTGTCTAGGAGGACTCTTCTAGAAAAAGAAAGTCAAAGAATATTGAGCATTTTGGAATGAGTTAGGGGGATGGAGAGGTAAAAACTAATTAAAGGAACACACTCTCAAAAAAGGAATTACTTAAAAATTCGTCCTTGTCTGGAAAGAGCGTCCGGGCGGTTTGGTTGACTGTAAGTGGGGACGTTGTAGTTGACTGGTTCGACGTCTGGACGATAGGCTGATGGAGAACCCTGGAAATTACGAATTCAGTATTTTTTTTTGAATTATTRAAAATTTCAAAAGTATCAAATGGATCTGTGAAAGTTTCTAAACTTCAGAAAAATTCCGAAGTTTGGAAATAATGGGACTATCAGCATAAAGTTAATGTATCTGAGTTACTGTAAGAGATACCAAAAAGGTGTCAATTGACAAAATGGTTATCATAATATTACCAACATTTTACCAGTTGACACATTTTTGATATCTCTCAAATGCACCGAGATAAGTTGACTCAAAGTTAGGTGTACCGTATTTCCTCCTACCATAGGAATTGAGATAATTAAGGTCAAATTTGACAGTGTGGGCACATTTCTATTGAAGTTTTATATCTTCTCTTGTCTCTGTCTTTTATGTCGTCTTTTCGTCTTTAGTGGGGTTATTCATGTAGCAAAACTCTGTATTGATTTTTTAAATCCTTCACAAAGTTTAAAGGCGCATCCCTTTTTCCAGAAAAAATATCTCGCCACGCGATGTATTTCAATGCGTTTACAGTTATGTCGCGAAATGCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTAAAGGAACACACTCTCAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCGGAATTTTTCTGAAGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AATTAAAGGAACACACTCTCAAAAAAGGAATTACTTAAAAATTCGTCCTTGTCTGGAAAGAGCGTCCGGGCGGTTTGGTTGACTGTAAGTGGGGACGTTGTAGTTGACTGGTTCGACGTCTGGACGATAGGCTGATGGAGAACCCTGGAAATTACGAATTCAGTATTTTTTTTTGAATTATTGAAAATTTCAAAAGTATCAAATGGATCTGTGAAAGTTTCTAAACTTCAGAAAAATTCCGAA</canonical_amplicon>
		<polymorphic_amplicon>AATTAAAGGAACACACTCTCAAAAAAGGAATTACTTAAAAATTCGTCCTTGTCTGGAAAGAGCGTCCGGGCGGTTTGGTTGACTGTAAGTGGGGACGTTGTAGTTGACTGGTTCGACGTCTGGACGATAGGCTGATGGAGAACCCTGGAAATTACGAATTCAGTATTTTTTTTTGAATTATTRAAAATTTCAAAAGTATCAAATGGATCTGTGAAAGTTTCTAAACTTCAGAAAAATTCCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27958</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>285560</contig_pos>
        <strand>+</strand>
        <context>GTATTCGCTT[C/T]GGCGTAGGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGGTAGTAGTTTTCGAAATCTTGCTGATTCTGTTCGATGGTATTCGCTT</left_flank>
        <right_flank>GGCGTAGGTTCTCCATTCGGGGACGAATAGATAGAAGCAGTCTTGTTGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATTTCCATTTTGTCCATTAACTCCATTCAAGTTCACAACTCCATTTACAGCTGGATGGTATCCGGATGGCTGACGGGATTGTTGCATAATCTGTTGTTGATTCTGAATTCTTTGCTGCTGCATGTCTACCACAGATGGATTTGTATTCTGGGTTGGATACTGTGGATTGTTGACACTGTATGGTTGATTAGCCTGTCCATTTACAGGTACTCCATAGTTTTGTTGTTGTTGAATGCCTTGAGGGTTCTGGGGGTTATGAGGATTTTGAGGACCCTGGCCCGTCACAATTCCATACATATTTGATCCTAAACTTCCAATAGCGTTCCCAACTTGTCCTACAAACGCCCCAGTCGCATTCATCATCTGCCGTGGCACTCCGCTCAGTGGAATCCATCTACTATCATTTGGCCCGTTACTTCCATATGAGACCTGCATGTGTTGTCGGTTACGGTAGTAGTTTTCGAAATCTTGCTGATTCTGTTCGATGGTATTCGCTTGGGCGTAGGTTCTCCATTCGGGGACGAATAGATAGAAGCAGTCTTGTTGCTTGATGTTCAGGTACTCGTCGTTGTTGTCGGAGGCGTTTCGCATGATTCCGTATTGTGGCAGACAGAAGTCGTAGCAGTCCGTGCAGCGGCGGTCTGGAATTTGTTTTTTCGTGAACACTAGAAATTCAGGACTGATAAGTGGTATCAAAAGTCGGTCAATTAGTGAAATACACCAAAAAATTGTATGTTTGCCACTTATTGATAACCCGAAGGACAGTGAGAAAAAGCTTTTGAAAGTGGCATCCTTTAAAGGCGAATAACTATTTTCTTGCTACAGTTCTATGAATGTTGCAAGCTAAAAAAAAATGAGTAAAACTGTAGTTCATTCATTTTTCTCAAAAAAAGTTTTTTGGTATCTCTAACGATACTCGAGATATGCGCCTTTGAAATTTGGAATAGACGCAGACAACGAGAGGTTCTCGTTTCTCTGCGTCTCCATCCAACTTTAGA</canonical>
            <polymorphic>GTATTTCCATTTTGTCCATTAACTCCATTCAAGTTCACAACTCCATTTACAGCTGGATGGTATCCGGATGGCTGACGGGATTGTTGCATAATCTGTTGTTGATTCTGAATTCTTTGCTGCTGCATGTCTACCACAGATGGATTTGTATTCTGGGTTGGATACTGTGGATTGTTGACACTGTATGGTTGATTAGCCTGTCCATTTACAGGTACTCCATAGTTTTGTTGTTGTTGAATGCCTTGAGGGTTCTGGGGGTTATGAGGATTTTGAGGACCCTGGCCCGTCACAATTCCATACATATTTGATCCTAAACTTCCAATAGCGTTCCCAACTTGTCCTACAAACGCCCCAGTCGCATTCATCATCTGCCGTGGCACTCCGCTCAGTGGAATCCATCTACTATCATTTGGCCCGTTACTTCCATATGAGACCTGCATGTGTTGTCGGTTACGGTAGTAGTTTTCGAAATCTTGCTGATTCTGTTCGATGGTATTCGCTTYGGCGTAGGTTCTCCATTCGGGGACGAATAGATAGAAGCAGTCTTGTTGCTTGATGTTCAGGTACTCGTCGTTGTTGTCGGAGGCGTTTCGCATGATTCCGTATTGTGGCAGACAGAAGTCGTAGCAGTCCGTGCAGCGGCGGTCTGGAATTTGTTTTTTCGTGAACACTAGAAATTCAGGACTGATAAGTGGTATCAAAAGTCGGTCAATTAGTGAAATACACCAAAAAATTGTATGTTTGCCACTTATTGATAACCCGAAGGACAGTGAGAAAAAGCTTTTGAAAGTGGCATCCTTTAAAGGCGAATAACTATTTTCTTGCTACAGTTCTATGAATGTTGCAAGCTAAAAAAAAATGAGTAAAACTGTAGTTCATTCATTTTTCTCAAAAAAAGTTTTTTGGTATCTCTAACGATACTCGAGATATGCGCCTTTGAAATTTGGAATAGACGCAGACAACGAGAGGTTCTCGTTTCTCTGCGTCTCCATCCAACTTTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGATCCTAAACTTCCAATAGC</pcr_primer_p1>
		<pcr_primer_p2>CAAGCAACAAGACTGCTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTGATCCTAAACTTCCAATAGCGTTCCCAACTTGTCCTACAAACGCCCCAGTCGCATTCATCATCTGCCGTGGCACTCCGCTCAGTGGAATCCATCTACTATCATTTGGCCCGTTACTTCCATATGAGACCTGCATGTGTTGTCGGTTACGGTAGTAGTTTTCGAAATCTTGCTGATTCTGTTCGATGGTATTCGCTTGGGCGTAGGTTCTCCATTCGGGGACGAATAGATAGAAGCAGTCTTGTTGCTTG</canonical_amplicon>
		<polymorphic_amplicon>TTGATCCTAAACTTCCAATAGCGTTCCCAACTTGTCCTACAAACGCCCCAGTCGCATTCATCATCTGCCGTGGCACTCCGCTCAGTGGAATCCATCTACTATCATTTGGCCCGTTACTTCCATATGAGACCTGCATGTGTTGTCGGTTACGGTAGTAGTTTTCGAAATCTTGCTGATTCTGTTCGATGGTATTCGCTTYGGCGTAGGTTCTCCATTCGGGGACGAATAGATAGAAGCAGTCTTGTTGCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27959</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>285588</contig_pos>
        <strand></strand>
        <context>CGGGGACGAA[T/C]AGATAGAAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCTGTTCGATGGTATTCGCTTGGGCGTAGGTTCTCCATTCGGGGACGAA</left_flank>
        <right_flank>AGATAGAAGCAGTCTTGTTGCTTGATGTTCAGGTACTCGTCGTTGTTGTC</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAGTTCACAACTCCATTTACAGCTGGATGGTATCCGGATGGCTGACGGGATTGTTGCATAATCTGTTGTTGATTCTGAATTCTTTGCTGCTGCATGTCTACCACAGATGGATTTGTATTCTGGGTTGGATACTGTGGATTGTTGACACTGTATGGTTGATTAGCCTGTCCATTTACAGGTACTCCATAGTTTTGTTGTTGTTGAATGCCTTGAGGGTTCTGGGGGTTATGAGGATTTTGAGGACCCTGGCCCGTCACAATTCCATACATATTTGATCCTAAACTTCCAATAGCGTTCCCAACTTGTCCTACAAACGCCCCAGTCGCATTCATCATCTGCCGTGGCACTCCGCTCAGTGGAATCCATCTACTATCATTTGGCCCGTTACTTCCATATGAGACCTGCATGTGTTGTCGGTTACGGTAGTAGTTTTCGAAATCTTGCTGATTCTGTTCGATGGTATTCGCTTGGGCGTAGGTTCTCCATTCGGGGACGAATAGATAGAAGCAGTCTTGTTGCTTGATGTTCAGGTACTCGTCGTTGTTGTCGGAGGCGTTTCGCATGATTCCGTATTGTGGCAGACAGAAGTCGTAGCAGTCCGTGCAGCGGCGGTCTGGAATTTGTTTTTTCGTGAACACTAGAAATTCAGGACTGATAAGTGGTATCAAAAGTCGGTCAATTAGTGAAATACACCAAAAAATTGTATGTTTGCCACTTATTGATAACCCGAAGGACAGTGAGAAAAAGCTTTTGAAAGTGGCATCCTTTAAAGGCGAATAACTATTTTCTTGCTACAGTTCTATGAATGTTGCAAGCTAAAAAAAAATGAGTAAAACTGTAGTTCATTCATTTTTCTCAAAAAAAGTTTTTTGGTATCTCTAACGATACTCGAGATATGCGCCTTTGAAATTTGGAATAGACGCAGACAACGAGAGGTTCTCGTTTCTCTGCGTCTCCATCCAACTTTAGAGGCGCATATCTCATTAACCGTCAGAGCT</canonical>
            <polymorphic>TCAAGTTCACAACTCCATTTACAGCTGGATGGTATCCGGATGGCTGACGGGATTGTTGCATAATCTGTTGTTGATTCTGAATTCTTTGCTGCTGCATGTCTACCACAGATGGATTTGTATTCTGGGTTGGATACTGTGGATTGTTGACACTGTATGGTTGATTAGCCTGTCCATTTACAGGTACTCCATAGTTTTGTTGTTGTTGAATGCCTTGAGGGTTCTGGGGGTTATGAGGATTTTGAGGACCCTGGCCCGTCACAATTCCATACATATTTGATCCTAAACTTCCAATAGCGTTCCCAACTTGTCCTACAAACGCCCCAGTCGCATTCATCATCTGCCGTGGCACTCCGCTCAGTGGAATCCATCTACTATCATTTGGCCCGTTACTTCCATATGAGACCTGCATGTGTTGTCGGTTACGGTAGTAGTTTTCGAAATCTTGCTGATTCTGTTCGATGGTATTCGCTTGGGCGTAGGTTCTCCATTCGGGGACGAAYAGATAGAAGCAGTCTTGTTGCTTGATGTTCAGGTACTCGTCGTTGTTGTCGGAGGCGTTTCGCATGATTCCGTATTGTGGCAGACAGAAGTCGTAGCAGTCCGTGCAGCGGCGGTCTGGAATTTGTTTTTTCGTGAACACTAGAAATTCAGGACTGATAAGTGGTATCAAAAGTCGGTCAATTAGTGAAATACACCAAAAAATTGTATGTTTGCCACTTATTGATAACCCGAAGGACAGTGAGAAAAAGCTTTTGAAAGTGGCATCCTTTAAAGGCGAATAACTATTTTCTTGCTACAGTTCTATGAATGTTGCAAGCTAAAAAAAAATGAGTAAAACTGTAGTTCATTCATTTTTCTCAAAAAAAGTTTTTTGGTATCTCTAACGATACTCGAGATATGCGCCTTTGAAATTTGGAATAGACGCAGACAACGAGAGGTTCTCGTTTCTCTGCGTCTCCATCCAACTTTAGAGGCGCATATCTCATTAACCGTCAGAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGATTCTGTTCGATGGTATTC</pcr_primer_p1>
		<pcr_primer_p2>TATTTCACTAATTGACCGACTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTGATTCTGTTCGATGGTATTCGCTTGGGCGTAGGTTCTCCATTCGGGGACGAATAGATAGAAGCAGTCTTGTTGCTTGATGTTCAGGTACTCGTCGTTGTTGTCGGAGGCGTTTCGCATGATTCCGTATTGTGGCAGACAGAAGTCGTAGCAGTCCGTGCAGCGGCGGTCTGGAATTTGTTTTTTCGTGAACACTAGAAATTCAGGACTGATAAGTGGTATCAAAAGTCGGTCAATTAGTGAAATA</canonical_amplicon>
		<polymorphic_amplicon>CTGATTCTGTTCGATGGTATTCGCTTGGGCGTAGGTTCTCCATTCGGGGACGAAYAGATAGAAGCAGTCTTGTTGCTTGATGTTCAGGTACTCGTCGTTGTTGTCGGAGGCGTTTCGCATGATTCCGTATTGTGGCAGACAGAAGTCGTAGCAGTCCGTGCAGCGGCGGTCTGGAATTTGTTTTTTCGTGAACACTAGAAATTCAGGACTGATAAGTGGTATCAAAAGTCGGTCAATTAGTGAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27960</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>285897</contig_pos>
        <strand>+</strand>
        <context>GTTCTATGAA[A/C]GTTGCAAGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTGGCATCCTTTAAAGGCGAATAACTATTTTCTTGCTACAGTTCTATGAA</left_flank>
        <right_flank>GTTGCAAGCTAAAAAAAAATGAGTAAAACTGTAGTTCATTCATTTTTCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACAAACGCCCCAGTCGCATTCATCATCTGCCGTGGCACTCCGCTCAGTGGAATCCATCTACTATCATTTGGCCCGTTACTTCCATATGAGACCTGCATGTGTTGTCGGTTACGGTAGTAGTTTTCGAAATCTTGCTGATTCTGTTCGATGGTATTCGCTTGGGCGTAGGTTCTCCATTCGGGGACGAATAGATAGAAGCAGTCTTGTTGCTTGATGTTCAGGTACTCGTCGTTGTTGTCGGAGGCGTTTCGCATGATTCCGTATTGTGGCAGACAGAAGTCGTAGCAGTCCGTGCAGCGGCGGTCTGGAATTTGTTTTTTCGTGAACACTAGAAATTCAGGACTGATAAGTGGTATCAAAAGTCGGTCAATTAGTGAAATACACCAAAAAATTGTATGTTTGCCACTTATTGATAACCCGAAGGACAGTGAGAAAAAGCTTTTGAAAGTGGCATCCTTTAAAGGCGAATAACTATTTTCTTGCTACAGTTCTATGAATGTTGCAAGCTAAAAAAAAATGAGTAAAACTGTAGTTCATTCATTTTTCTCAAAAAAAGTTTTTTGGTATCTCTAACGATACTCGAGATATGCGCCTTTGAAATTTGGAATAGACGCAGACAACGAGAGGTTCTCGTTTCTCTGCGTCTCCATCCAACTTTAGAGGCGCATATCTCATTAACCGTCAGAGCTATCGAAATGCTTTGAACTAAGAGAATGTGTAAATTCTAATTTTACACAATTCATAGTTGTGAAAATTGTTGGGTTGCAAGAATGAAACCGTCTAGCTTCTCTCCACTTTCTAAATCCTTTTCAACTCACTTCTCTGATCTGAAGTCTGTTGTAGCTGCACAATTCGAGATCCATTGCACTCTGGGATCGGTGGGTTAAACATGTTTTGAGCCTGTAACTAGGAAAACTACAAGCCCTAAATCAAGCTTGAACTTACCGAATTAGTCTGTTGAAGTGGAGATGGAATCCATGACCAAACTTGTTGCCAAC</canonical>
            <polymorphic>CTACAAACGCCCCAGTCGCATTCATCATCTGCCGTGGCACTCCGCTCAGTGGAATCCATCTACTATCATTTGGCCCGTTACTTCCATATGAGACCTGCATGTGTTGTCGGTTACGGTAGTAGTTTTCGAAATCTTGCTGATTCTGTTCGATGGTATTCGCTTGGGCGTAGGTTCTCCATTCGGGGACGAATAGATAGAAGCAGTCTTGTTGCTTGATGTTCAGGTACTCGTCGTTGTTGTCGGAGGCGTTTCGCATGATTCCGTATTGTGGCAGACAGAAGTCGTAGCAGTCCGTGCAGCGGCGGTCTGGAATTTGTTTTTTCGTGAACACTAGAAATTCAGGACTGATAAGTGGTATCAAAAGTCGGTCAATTAGTGAAATACACCAAAAAATTGTATGTTTGCCACTTATTGATAACCCGAAGGACAGTGAGAAAAAGCTTTTGAAAGTGGCATCCTTTAAAGGCGAATAACTATTTTCTTGCTACAGTTCTATGAAMGTTGCAAGCTAAAAAAAAATGAGTAAAACTGTAGTTCATTCATTTTTCTCAAAAAAAGTTTTTTGGTATCTCTAACGATACTCGAGATATGCGCCTTTGAAATTTGGAATAGACGCAGACAACGAGAGGTTCTCGTTTCTCTGCGTCTCCATCCAACTTTAGAGGCGCATATCTCATTAACCGTCAGAGCTATCGAAATGCTTTGAACTAAGAGAATGTGTAAATTCTAATTTTACACAATTCATAGTTGTGAAAATTGTTGGGTTGCAAGAATGAAACCGTCTAGCTTCTCTCCACTTTCTAAATCCTTTTCAACTCACTTCTCTGATCTGAAGTCTGTTGTAGCTGCACAATTCGAGATCCATTGCACTCTGGGATCGGTGGGTTAAACATGTTTTGAGCCTGTAACTAGGAAAACTACAAGCCCTAAATCAAGCTTGAACTTACCGAATTAGTCTGTTGAAGTGGAGATGGAATCCATGACCAAACTTGTTGCCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAAGTGGCATCCTTTA</pcr_primer_p1>
		<pcr_primer_p2>GCTAGACGGTTTCATTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>345</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAAGTGGCATCCTTTAAAGGCGAATAACTATTTTCTTGCTACAGTTCTATGAATGTTGCAAGCTAAAAAAAAATGAGTAAAACTGTAGTTCATTCATTTTTCTCAAAAAAAGTTTTTTGGTATCTCTAACGATACTCGAGATATGCGCCTTTGAAATTTGGAATAGACGCAGACAACGAGAGGTTCTCGTTTCTCTGCGTCTCCATCCAACTTTAGAGGCGCATATCTCATTAACCGTCAGAGCTATCGAAATGCTTTGAACTAAGAGAATGTGTAAATTCTAATTTTACACAATTCATAGTTGTGAAAATTGTTGGGTTGCAAGAATGAAACCGTCTAGC</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAAGTGGCATCCTTTAAAGGCGAATAACTATTTTCTTGCTACAGTTCTATGAAMGTTGCAAGCTAAAAAAAAATGAGTAAAACTGTAGTTCATTCATTTTTCTCAAAAAAAGTTTTTTGGTATCTCTAACGATACTCGAGATATGCGCCTTTGAAATTTGGAATAGACGCAGACAACGAGAGGTTCTCGTTTCTCTGCGTCTCCATCCAACTTTAGAGGCGCATATCTCATTAACCGTCAGAGCTATCGAAATGCTTTGAACTAAGAGAATGTGTAAATTCTAATTTTACACAATTCATAGTTGTGAAAATTGTTGGGTTGCAAGAATGAAACCGTCTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27961</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>285985</contig_pos>
        <strand></strand>
        <context>atactcgaga[T/C]atgcgccttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTCATTTTTCTCAAAAAAAGTTTTTTGGTATCTCTAACGATACTCGAGA</left_flank>
        <right_flank>ATGCGCCTTTGAAATTTGGAATAGACGCAGACAACGAGAGGTTCTCGTTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGACCTGCATGTGTTGTCGGTTACGGTAGTAGTTTTCGAAATCTTGCTGATTCTGTTCGATGGTATTCGCTTGGGCGTAGGTTCTCCATTCGGGGACGAATAGATAGAAGCAGTCTTGTTGCTTGATGTTCAGGTACTCGTCGTTGTTGTCGGAGGCGTTTCGCATGATTCCGTATTGTGGCAGACAGAAGTCGTAGCAGTCCGTGCAGCGGCGGTCTGGAATTTGTTTTTTCGTGAACACTAGAAATTCAGGACTGATAAGTGGTATCAAAAGTCGGTCAATTAGTGAAATACACCAAAAAATTGTATGTTTGCCACTTATTGATAACCCGAAGGACAGTGAGAAAAAGCTTTTGAAAGTGGCATCCTTTAAAGGCGAATAACTATTTTCTTGCTACAGTTCTATGAATGTTGCAAGCTAAAAAAAAATGAGTAAAACTGTAGTTCATTCATTTTTCTCAAAAAAAGTTTTTTGGTATCTCTAACGATACTCGAGATATGCGCCTTTGAAATTTGGAATAGACGCAGACAACGAGAGGTTCTCGTTTCTCTGCGTCTCCATCCAACTTTAGAGGCGCATATCTCATTAACCGTCAGAGCTATCGAAATGCTTTGAACTAAGAGAATGTGTAAATTCTAATTTTACACAATTCATAGTTGTGAAAATTGTTGGGTTGCAAGAATGAAACCGTCTAGCTTCTCTCCACTTTCTAAATCCTTTTCAACTCACTTCTCTGATCTGAAGTCTGTTGTAGCTGCACAATTCGAGATCCATTGCACTCTGGGATCGGTGGGTTAAACATGTTTTGAGCCTGTAACTAGGAAAACTACAAGCCCTAAATCAAGCTTGAACTTACCGAATTAGTCTGTTGAAGTGGAGATGGAATCCATGACCAAACTTGTTGCCAACCATCGGTTTGTTGATGTCTCAACACTGAGCTCTTCGCTGCTTTCCGAACATCACCAGGGTTTGGCATTGAGGATCTATCCAGTGGCAG</canonical>
            <polymorphic>TGAGACCTGCATGTGTTGTCGGTTACGGTAGTAGTTTTCGAAATCTTGCTGATTCTGTTCGATGGTATTCGCTTGGGCGTAGGTTCTCCATTCGGGGACGAATAGATAGAAGCAGTCTTGTTGCTTGATGTTCAGGTACTCGTCGTTGTTGTCGGAGGCGTTTCGCATGATTCCGTATTGTGGCAGACAGAAGTCGTAGCAGTCCGTGCAGCGGCGGTCTGGAATTTGTTTTTTCGTGAACACTAGAAATTCAGGACTGATAAGTGGTATCAAAAGTCGGTCAATTAGTGAAATACACCAAAAAATTGTATGTTTGCCACTTATTGATAACCCGAAGGACAGTGAGAAAAAGCTTTTGAAAGTGGCATCCTTTAAAGGCGAATAACTATTTTCTTGCTACAGTTCTATGAATGTTGCAAGCTAAAAAAAAATGAGTAAAACTGTAGTTCATTCATTTTTCTCAAAAAAAGTTTTTTGGTATCTCTAACGATACTCGAGAYATGCGCCTTTGAAATTTGGAATAGACGCAGACAACGAGAGGTTCTCGTTTCTCTGCGTCTCCATCCAACTTTAGAGGCGCATATCTCATTAACCGTCAGAGCTATCGAAATGCTTTGAACTAAGAGAATGTGTAAATTCTAATTTTACACAATTCATAGTTGTGAAAATTGTTGGGTTGCAAGAATGAAACCGTCTAGCTTCTCTCCACTTTCTAAATCCTTTTCAACTCACTTCTCTGATCTGAAGTCTGTTGTAGCTGCACAATTCGAGATCCATTGCACTCTGGGATCGGTGGGTTAAACATGTTTTGAGCCTGTAACTAGGAAAACTACAAGCCCTAAATCAAGCTTGAACTTACCGAATTAGTCTGTTGAAGTGGAGATGGAATCCATGACCAAACTTGTTGCCAACCATCGGTTTGTTGATGTCTCAACACTGAGCTCTTCGCTGCTTTCCGAACATCACCAGGGTTTGGCATTGAGGATCTATCCAGTGGCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTATTTTCTTGCTACAGTTCTATGA</pcr_primer_p1>
		<pcr_primer_p2>GCTAGACGGTTTCATTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>315</pcr_amplicon_size>
		<canonical_amplicon>ACTATTTTCTTGCTACAGTTCTATGAATGTTGCAAGCTAAAAAAAAATGAGTAAAACTGTAGTTCATTCATTTTTCTCAAAAAAAGTTTTTTGGTATCTCTAACGATACTCGAGATATGCGCCTTTGAAATTTGGAATAGACGCAGACAACGAGAGGTTCTCGTTTCTCTGCGTCTCCATCCAACTTTAGAGGCGCATATCTCATTAACCGTCAGAGCTATCGAAATGCTTTGAACTAAGAGAATGTGTAAATTCTAATTTTACACAATTCATAGTTGTGAAAATTGTTGGGTTGCAAGAATGAAACCGTCTAGC</canonical_amplicon>
		<polymorphic_amplicon>ACTATTTTCTTGCTACAGTTCTATGAATGTTGCAAGCTAAAAAAAAATGAGTAAAACTGTAGTTCATTCATTTTTCTCAAAAAAAGTTTTTTGGTATCTCTAACGATACTCGAGAYATGCGCCTTTGAAATTTGGAATAGACGCAGACAACGAGAGGTTCTCGTTTCTCTGCGTCTCCATCCAACTTTAGAGGCGCATATCTCATTAACCGTCAGAGCTATCGAAATGCTTTGAACTAAGAGAATGTGTAAATTCTAATTTTACACAATTCATAGTTGTGAAAATTGTTGGGTTGCAAGAATGAAACCGTCTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27962</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>304878</contig_pos>
        <strand>+</strand>
        <context>CAATCTGTTG[A/G]CCTTTATTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTG</left_flank>
        <right_flank>CCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGAGATCTCACCTCCATATCTTCTTTTGGCCTCTGTTGGATTATAATCCTCCGTTTCTTCCTTTTTCATCTCTCCGTACTCCCGCTTCATGCGACTTTCTGGAGTTGAAAAGGGTGGACGGGATGAGCCAAACGGCTTTCGATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTG</canonical>
            <polymorphic>TATGAGATCTCACCTCCATATCTTCTTTTGGCCTCTGTTGGATTATAATCCTCCGTTTCTTCCTTTTTCATCTCTCCGTACTCCCGCTTCATGCGACTTTCTGGAGTTGAAAAGGGTGGACGGGATGAGCCAAACGGCTTTCGATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGRCCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>498 433 69</canonical_bands>
                <polymorphic_bands>567 433</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>354 338 118 79 69 42</canonical_bands>
                <polymorphic_bands>354 338 118 111 79</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATGCCAACTACTGTAGACTCC</pcr_primer_p1>
		<pcr_primer_p2>TCTTTCTTTCTCTTTTTCAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>370</pcr_amplicon_size>
		<canonical_amplicon>TAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGA</canonical_amplicon>
		<polymorphic_amplicon>TAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGRCCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27963</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>304899</contig_pos>
        <strand>+</strand>
        <context>TGGCGTCATA[C/T]TCAWCTGTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATA</left_flank>
        <right_flank>TCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCTTTTGGCCTCTGTTGGATTATAATCCTCCGTTTCTTCCTTTTTCATCTCTCCGTACTCCCGCTTCATGCGACTTTCTGGAGTTGAAAAGGGTGGACGGGATGAGCCAAACGGCTTTCGATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACA</canonical>
            <polymorphic>CTTCTTTTGGCCTCTGTTGGATTATAATCCTCCGTTTCTTCCTTTTTCATCTCTCCGTACTCCCGCTTCATGCGACTTTCTGGAGTTGAAAAGGGTGGACGGGATGAGCCAAACGGCTTTCGATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATAYTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTAGAGCAAAAAGGTGTTATAC</pcr_primer_p1>
		<pcr_primer_p2>TCTTTCTTTCTCTTTTTCAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>343</pcr_amplicon_size>
		<canonical_amplicon>CCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGA</canonical_amplicon>
		<polymorphic_amplicon>CCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATAYTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27964</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>304903</contig_pos>
        <strand>+</strand>
        <context>GTCATAYTCA[A/T]CTGTTGCGCR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCA</left_flank>
        <right_flank>CTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGGCCTCTGTTGGATTATAATCCTCCGTTTCTTCCTTTTTCATCTCTCCGTACTCCCGCTTCATGCGACTTTCTGGAGTTGAAAAGGGTGGACGGGATGAGCCAAACGGCTTTCGATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTT</canonical>
            <polymorphic>TTTTGGCCTCTGTTGGATTATAATCCTCCGTTTCTTCCTTTTTCATCTCTCCGTACTCCCGCTTCATGCGACTTTCTGGAGTTGAAAAGGGTGGACGGGATGAGCCAAACGGCTTTCGATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAWCTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>498 273 155 74</canonical_bands>
                <polymorphic_bands>572 273 155</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAAAAAGGTGTTATACCAATC</pcr_primer_p1>
		<pcr_primer_p2>TCTTTCTTTCTCTTTTTCAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>337</pcr_amplicon_size>
		<canonical_amplicon>GCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAWCTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27965</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>304913</contig_pos>
        <strand>+</strand>
        <context>WCTGTTGCGC[A/G]TCKCYTTCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGC</left_flank>
        <right_flank>TCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTGGATTATAATCCTCCGTTTCTTCCTTTTTCATCTCTCCGTACTCCCGCTTCATGCGACTTTCTGGAGTTGAAAAGGGTGGACGGGATGAGCCAAACGGCTTTCGATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTG</canonical>
            <polymorphic>TGTTGGATTATAATCCTCCGTTTCTTCCTTTTTCATCTCTCCGTACTCCCGCTTCATGCGACTTTCTGGAGTTGAAAAGGGTGGACGGGATGAGCCAAACGGCTTTCGATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCRTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>498 480 22</canonical_bands>
                <polymorphic_bands>520 480</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGGTGTTATACCAATCTGTTG</pcr_primer_p1>
		<pcr_primer_p2>TCTTTCTTTCTCTTTTTCAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>333</pcr_amplicon_size>
		<canonical_amplicon>AAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGA</canonical_amplicon>
		<polymorphic_amplicon>AAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCRTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27966</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>304916</contig_pos>
        <strand>+</strand>
        <context>GTTGCGCRTC[G/T]CYTTCTTCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTC</left_flank>
        <right_flank>CCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGATTATAATCCTCCGTTTCTTCCTTTTTCATCTCTCCGTACTCCCGCTTCATGCGACTTTCTGGAGTTGAAAAGGGTGGACGGGATGAGCCAAACGGCTTTCGATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAA</canonical>
            <polymorphic>TGGATTATAATCCTCCGTTTCTTCCTTTTTCATCTCTCCGTACTCCCGCTTCATGCGACTTTCTGGAGTTGAAAAGGGTGGACGGGATGAGCCAAACGGCTTTCGATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCKCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGGTGTTATACCAATCTGTTG</pcr_primer_p1>
		<pcr_primer_p2>TCTTTCTTTCTCTTTTTCAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>333</pcr_amplicon_size>
		<canonical_amplicon>AAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGA</canonical_amplicon>
		<polymorphic_amplicon>AAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCKCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27967</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>304918</contig_pos>
        <strand>+</strand>
        <context>TGCGCRTCKC[C/T]TTCTTCTAKG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTC</left_flank>
        <right_flank>TTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTATAATCCTCCGTTTCTTCCTTTTTCATCTCTCCGTACTCCCGCTTCATGCGACTTTCTGGAGTTGAAAAGGGTGGACGGGATGAGCCAAACGGCTTTCGATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAG</canonical>
            <polymorphic>GATTATAATCCTCCGTTTCTTCCTTTTTCATCTCTCCGTACTCCCGCTTCATGCGACTTTCTGGAGTTGAAAAGGGTGGACGGGATGAGCCAAACGGCTTTCGATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCYTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGGTGTTATACCAATCTGTTG</pcr_primer_p1>
		<pcr_primer_p2>TCTTTCTTTCTCTTTTTCAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>333</pcr_amplicon_size>
		<canonical_amplicon>AAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGA</canonical_amplicon>
		<polymorphic_amplicon>AAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCYTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27968</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>304927</contig_pos>
        <strand>+</strand>
        <context>CYTTCTTCTA[G/T]GTCAYGCGGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTA</left_flank>
        <right_flank>GTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTCCGTTTCTTCCTTTTTCATCTCTCCGTACTCCCGCTTCATGCGACTTTCTGGAGTTGAAAAGGGTGGACGGGATGAGCCAAACGGCTTTCGATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATC</canonical>
            <polymorphic>CCTCCGTTTCTTCCTTTTTCATCTCTCCGTACTCCCGCTTCATGCGACTTTCTGGAGTTGAAAAGGGTGGACGGGATGAGCCAAACGGCTTTCGATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAKGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>419 244 110 82 78 67</canonical_bands>
                <polymorphic_bands>419 244 145 110 82</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGGTGTTATACCAATCTGTTG</pcr_primer_p1>
		<pcr_primer_p2>TCTTTCTTTCTCTTTTTCAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>333</pcr_amplicon_size>
		<canonical_amplicon>AAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGA</canonical_amplicon>
		<polymorphic_amplicon>AAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAKGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27969</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>304932</contig_pos>
        <strand>+</strand>
        <context>TTCTAKGTCA[C/T]GCGGCCKCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCA</left_flank>
        <right_flank>GCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTCTTCCTTTTTCATCTCTCCGTACTCCCGCTTCATGCGACTTTCTGGAGTTGAAAAGGGTGGACGGGATGAGCCAAACGGCTTTCGATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAA</canonical>
            <polymorphic>GTTTCTTCCTTTTTCATCTCTCCGTACTCCCGCTTCATGCGACTTTCTGGAGTTGAAAAGGGTGGACGGGATGAGCCAAACGGCTTTCGATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCAYGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 479 22</canonical_bands>
                <polymorphic_bands>521 479</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>151 140 72 72 70 65 64 64 38 35 33 31 31 27 27 21 19 18 15 3 2 2</canonical_bands>
                <polymorphic_bands>151 140 88 72 72 65 64 64 38 35 33 31 31 27 27 21 19 15 3 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>495 294 91 74 26 20</canonical_bands>
                <polymorphic_bands>521 294 91 74 20</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>495 388 117</canonical_bands>
                <polymorphic_bands>612 388</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGGTGTTATACCAATCTGTTG</pcr_primer_p1>
		<pcr_primer_p2>TCTTTCTTTCTCTTTTTCAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>333</pcr_amplicon_size>
		<canonical_amplicon>AAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGA</canonical_amplicon>
		<polymorphic_amplicon>AAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCAYGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27970</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>304939</contig_pos>
        <strand>+</strand>
        <context>TCAYGCGGCC[G/T]CTCGTTRACA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCC</left_flank>
        <right_flank>CTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTTTTCATCTCTCCGTACTCCCGCTTCATGCGACTTTCTGGAGTTGAAAAGGGTGGACGGGATGAGCCAAACGGCTTTCGATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTG</canonical>
            <polymorphic>CCTTTTTCATCTCTCCGTACTCCCGCTTCATGCGACTTTCTGGAGTTGAAAAGGGTGGACGGGATGAGCCAAACGGCTTTCGATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCKCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>351 345 148 98 32 23 3</canonical_bands>
                <polymorphic_bands>449 345 148 32 23 3</polymorphic_bands>
            </assay>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>498 333 133 18 14 4</canonical_bands>
                <polymorphic_bands>831 133 18 14 4</polymorphic_bands>
            </assay>
            <assay>
                <site>CGGCCG</site>
                <isoschizomers>
                    <enzyme>BseX3I</enzyme>
                    <enzyme>BstZI</enzyme>
                    <enzyme>EagI</enzyme>
                    <enzyme>EclXI</enzyme>
                    <enzyme>Eco52I</enzyme>
                    <enzyme>XmaIII</enzyme>
                </isoschizomers>
                <canonical_bands>495 337 168</canonical_bands>
                <polymorphic_bands>832 168</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGGCCGC</site>
                <isoschizomers>
                    <enzyme>CciNI</enzyme>
                    <enzyme>NotI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>495 337 168</canonical_bands>
                <polymorphic_bands>832 168</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGGTGTTATACCAATCTGTTG</pcr_primer_p1>
		<pcr_primer_p2>TCTTTCTTTCTCTTTTTCAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>333</pcr_amplicon_size>
		<canonical_amplicon>AAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGA</canonical_amplicon>
		<polymorphic_amplicon>AAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCKCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27971</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>304946</contig_pos>
        <strand>+</strand>
        <context>GCCKCTCGTT[A/G]ACACATTGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTT</left_flank>
        <right_flank>ACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCTCTCCGTACTCCCGCTTCATGCGACTTTCTGGAGTTGAAAAGGGTGGACGGGATGAGCCAAACGGCTTTCGATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTAT</canonical>
            <polymorphic>CATCTCTCCGTACTCCCGCTTCATGCGACTTTCTGGAGTTGAAAAGGGTGGACGGGATGAGCCAAACGGCTTTCGATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTRACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>501 430 69</canonical_bands>
                <polymorphic_bands>570 430</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGGTGTTATACCAATCTGTTG</pcr_primer_p1>
		<pcr_primer_p2>TCTTTCTTTCTCTTTTTCAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>333</pcr_amplicon_size>
		<canonical_amplicon>AAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGA</canonical_amplicon>
		<polymorphic_amplicon>AAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTRACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27972</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>304974</contig_pos>
        <strand>+</strand>
        <context>GTTATGATCT[A/G]GTAATTCGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCT</left_flank>
        <right_flank>GTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTCTGGAGTTGAAAAGGGTGGACGGGATGAGCCAAACGGCTTTCGATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTA</canonical>
            <polymorphic>CTTTCTGGAGTTGAAAAGGGTGGACGGGATGAGCCAAACGGCTTTCGATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTRGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGGTGTTATACCAATCTGTTG</pcr_primer_p1>
		<pcr_primer_p2>TCTTTCTTTCTCTTTTTCAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>333</pcr_amplicon_size>
		<canonical_amplicon>AAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGA</canonical_amplicon>
		<polymorphic_amplicon>AAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTRGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27973</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>304991</contig_pos>
        <strand>+</strand>
        <context>CGATACACAC[C/T]TAGCAGACRC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACAC</left_flank>
        <right_flank>TAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGTGGACGGGATGAGCCAAACGGCTTTCGATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAA</canonical>
            <polymorphic>GGGTGGACGGGATGAGCCAAACGGCTTTCGATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACYTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>355 244 174 82 78 67</canonical_bands>
                <polymorphic_bands>355 244 174 149 78</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGGTGTTATACCAATCTGTTG</pcr_primer_p1>
		<pcr_primer_p2>TCTTTCTTTCTCTTTTTCAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>333</pcr_amplicon_size>
		<canonical_amplicon>AAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGA</canonical_amplicon>
		<polymorphic_amplicon>AAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACYTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27974</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>305000</contig_pos>
        <strand>+</strand>
        <context>CYTAGCAGAC[A/G]CCAAAGAGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGAC</left_flank>
        <right_flank>CCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATGAGCCAAACGGCTTTCGATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTC</canonical>
            <polymorphic>GGATGAGCCAAACGGCTTTCGATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACRCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>502 391 107</canonical_bands>
                <polymorphic_bands>609 391</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACATTGTTACCAGATGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTCTTTCTTTCTCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACRCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27975</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>305011</contig_pos>
        <strand>+</strand>
        <context>CCAAAGAGGG[A/G]ARCATGRTGR</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGG</left_flank>
        <right_flank>AGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGGCTTTCGATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGA</canonical>
            <polymorphic>ACGGCTTTCGATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGRAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACATTGTTACCAGATGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTCTTTCTTTCTCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGRAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27976</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>305013</contig_pos>
        <strand>+</strand>
        <context>AAAGAGGGRA[A/G]CATGRTGRAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGA</left_flank>
        <right_flank>CATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTTTCGATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATG</canonical>
            <polymorphic>GGCTTTCGATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGARCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACATTGTTACCAGATGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTCTTTCTTTCTCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGARCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27977</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>305018</contig_pos>
        <strand>+</strand>
        <context>GGGRARCATG[A/G]TGRAATRAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATG</left_flank>
        <right_flank>TGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTA</canonical>
            <polymorphic>TCGATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGRTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>151 140 119 72 72 70 64 43 38 35 31 31 27 27 21 19 18 15 3 2 2</canonical_bands>
                <polymorphic_bands>151 140 119 72 72 70 64 58 43 38 35 31 27 21 19 18 15 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACATTGTTACCAGATGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTCTTTCTTTCTCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGRTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27978</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>305021</contig_pos>
        <strand>+</strand>
        <context>RARCATGRTG[A/G]AATRAGATAW</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTG</left_flank>
        <right_flank>AATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGA</canonical>
            <polymorphic>ATCCATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGRAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACATTGTTACCAGATGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTCTTTCTTTCTCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGRAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27979</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>305025</contig_pos>
        <strand>+</strand>
        <context>ATGRTGRAAT[A/G]AGATAWGRTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAAT</left_flank>
        <right_flank>AGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATAC</canonical>
            <polymorphic>ATTATGAGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATRAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACATTGTTACCAGATGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTCTTTCTTTCTCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATRAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27980</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>305031</contig_pos>
        <strand>+</strand>
        <context>RAATRAGATA[A/T]GRTATTAGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATA</left_flank>
        <right_flank>GGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCA</canonical>
            <polymorphic>AGATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATAWGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACATTGTTACCAGATGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTCTTTCTTTCTCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATAWGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27981</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>305033</contig_pos>
        <strand>+</strand>
        <context>ATRAGATAWG[A/G]TATTAGCAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATG</left_flank>
        <right_flank>TATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAA</canonical>
            <polymorphic>ATCTGCAAAAAGCAGTATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGRTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACATTGTTACCAGATGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTCTTTCTTTCTCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGRTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27982</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>305049</contig_pos>
        <strand>+</strand>
        <context>GCAGAGGTGA[C/T]RAMTTGYTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGA</left_flank>
        <right_flank>AACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTC</canonical>
            <polymorphic>ATATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGAYAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>378 294 191 91 26 20</canonical_bands>
                <polymorphic_bands>385 378 191 26 20</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>505 378 117</canonical_bands>
                <polymorphic_bands>622 378</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACATTGTTACCAGATGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTCTTTCTTTCTCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGAYAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27983</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>305050</contig_pos>
        <strand>+</strand>
        <context>CAGAGGTGAY[A/G]AMTTGYTTTR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGAC</left_flank>
        <right_flank>ACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCT</canonical>
            <polymorphic>TATTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACRACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACATTGTTACCAGATGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTCTTTCTTTCTCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACRACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27984</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>305052</contig_pos>
        <strand>+</strand>
        <context>GAGGTGAYRA[A/C]TTGYTTTRAR</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAA</left_flank>
        <right_flank>TTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAA</canonical>
            <polymorphic>TTAACAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAAMTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACATTGTTACCAGATGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTCTTTCTTTCTCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAAMTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27985</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>305056</contig_pos>
        <strand>+</strand>
        <context>TGAYRAMTTG[C/T]TTTRARATMA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTG</left_flank>
        <right_flank>TTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAA</canonical>
            <polymorphic>CAGTGAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGYTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACATTGTTACCAGATGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTCTTTCTTTCTCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGYTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27986</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>305060</contig_pos>
        <strand>+</strand>
        <context>RAMTTGYTTT[A/G]ARATMAGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTT</left_flank>
        <right_flank>AAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATG</canonical>
            <polymorphic>GAATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTRAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACATTGTTACCAGATGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTCTTTCTTTCTCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTRAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27987</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>305062</contig_pos>
        <strand>+</strand>
        <context>MTTGYTTTRA[A/G]ATMAGAAARG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGA</left_flank>
        <right_flank>ATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGG</canonical>
            <polymorphic>ATAAAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGARATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACATTGTTACCAGATGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTCTTTCTTTCTCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGARATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27988</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>305065</contig_pos>
        <strand>+</strand>
        <context>GYTTTRARAT[A/C]AGAAARGCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAAT</left_flank>
        <right_flank>AGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGA</canonical>
            <polymorphic>AAAGAGAAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATMAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>266 163 127 116 92 72 61 43 37 15 8</canonical_bands>
                <polymorphic_bands>303 163 127 116 92 72 61 43 15 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACATTGTTACCAGATGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTCTTTCTTTCTCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATMAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27989</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>305071</contig_pos>
        <strand>+</strand>
        <context>ARATMAGAAA[A/G]GCTAGTGGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAA</left_flank>
        <right_flank>GCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAG</canonical>
            <polymorphic>AAGAAGGTGAAGGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAARGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>287 284 214 129 80 6</canonical_bands>
                <polymorphic_bands>367 284 214 129 6</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>169 136 129 123 115 80 80 44 40 33 28 17 6</canonical_bands>
                <polymorphic_bands>216 169 129 123 115 80 44 40 33 28 17 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACATTGTTACCAGATGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTCTTTCTTTCTCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAARGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27990</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>305082</contig_pos>
        <strand>+</strand>
        <context>GCTAGTGGGA[G/T]SKYYGAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGA</left_flank>
        <right_flank>GTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAGGAATGAAAATG</canonical>
            <polymorphic>GGAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGAKGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAGGAATGAAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACATTGTTACCAGATGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTCTTTCTTTCTCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGAKGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27991</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>305083</contig_pos>
        <strand>+</strand>
        <context>CTAGTGGGAK[C/G]KYYGAAAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGAT</left_flank>
        <right_flank>TTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAGGAATGAAAATGG</canonical>
            <polymorphic>GAGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATSTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAGGAATGAAAATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACATTGTTACCAGATGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTCTTTCTTTCTCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATSTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27992</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>305084</contig_pos>
        <strand>+</strand>
        <context>TAGTGGGAKS[G/T]YYGAAAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATG</left_flank>
        <right_flank>TCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAGGAATGAAAATGGG</canonical>
            <polymorphic>AGAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGKTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAGGAATGAAAATGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACATTGTTACCAGATGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTCTTTCTTTCTCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGKTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27993</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>305085</contig_pos>
        <strand>+</strand>
        <context>AGTGGGAKSK[C/T]YGAAAATTTY</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGT</left_flank>
        <right_flank>CGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAGGAATGAAAATGGGA</canonical>
            <polymorphic>GAGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTYCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAGGAATGAAAATGGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>396 381 118 105</canonical_bands>
                <polymorphic_bands>396 381 223</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACATTGTTACCAGATGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTCTTTCTTTCTCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTYCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27994</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>305086</contig_pos>
        <strand>+</strand>
        <context>GTGGGAKSKY[C/T]GAAAATTTYG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTT</left_flank>
        <right_flank>GAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAGGAATGAAAATGGGAA</canonical>
            <polymorphic>AGCCGAGGATTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTYGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAGGAATGAAAATGGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>395 382 118 105</canonical_bands>
                <polymorphic_bands>395 382 223</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACATTGTTACCAGATGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTCTTTCTTTCTCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTYGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27995</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>305095</contig_pos>
        <strand>+</strand>
        <context>YYGAAAATTT[C/T]GAAGTTCAGY</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTT</left_flank>
        <right_flank>GAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAGGAATGAAAATGGGAAAGGCAAGTG</canonical>
            <polymorphic>TTCAAACATTGGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTYGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAGGAATGAAAATGGGAAAGGCAAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACATTGTTACCAGATGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTCTTTCTTTCTCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTYGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27996</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>305105</contig_pos>
        <strand>+</strand>
        <context>YGAAGTTCAG[C/T]AKTTCAGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAG</left_flank>
        <right_flank>AGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAGGAATGAAAATGGGAAAGGCAAGTGGTGCAGAGAA</canonical>
            <polymorphic>GGCGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGYAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAGGAATGAAAATGGGAAAGGCAAGTGGTGCAGAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>266 167 163 116 92 61 43 37 32 15 8</canonical_bands>
                <polymorphic_bands>266 167 163 116 92 61 45 43 32 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACATTGTTACCAGATGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTCTTTCTTTCTCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGYAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27997</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>305107</contig_pos>
        <strand>+</strand>
        <context>AAGTTCAGYA[G/T]TTCAGAAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAA</left_flank>
        <right_flank>TTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAGGAATGAAAATGGGAAAGGCAAGTGGTGCAGAGAAAT</canonical>
            <polymorphic>CGTAGTTTGAAAAAAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAKTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAGGAATGAAAATGGGAAAGGCAAGTGGTGCAGAGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACATTGTTACCAGATGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTCTTTCTTTCTCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAKTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27998</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>305120</contig_pos>
        <strand>+</strand>
        <context>CAGAAATTCG[A/C]ATTTCAGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCG</left_flank>
        <right_flank>ATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAGGAATGAAAATGGGAAAGGCAAGTGGTGCAGAGAAATGGTTTTTTGGGAA</canonical>
            <polymorphic>AAAAAGAAAATGACTCTGATGCCACACCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGMATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAGGAATGAAAATGGGAAAGGCAAGTGGTGCAGAGAAATGGTTTTTTGGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACATTGTTACCAGATGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTCTTTCTTTCTCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGMATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb27999</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>305146</contig_pos>
        <strand>+</strand>
        <context>TATAATCTAA[A/T]WGYMAGYTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAA</left_flank>
        <right_flank>TGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAGGAATGAAAATGGGAAAGGCAAGTGGTGCAGAGAAATGGTTTTTTGGGAAACGCGTCTGCAGAGGATATGAATCCA</canonical>
            <polymorphic>CCACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAWTGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAGGAATGAAAATGGGAAAGGCAAGTGGTGCAGAGAAATGGTTTTTTGGGAAACGCGTCTGCAGAGGATATGAATCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACATTGTTACCAGATGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>TTACCTCCCTTTTCTTTCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAA</canonical_amplicon>
		<polymorphic_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAWTGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28000</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>305147</contig_pos>
        <strand>+</strand>
        <context>ATAATCTAAW[A/T]GYMAGYTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAA</left_flank>
        <right_flank>GTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAGGAATGAAAATGGGAAAGGCAAGTGGTGCAGAGAAATGGTTTTTTGGGAAACGCGTCTGCAGAGGATATGAATCCAA</canonical>
            <polymorphic>CACCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAAWGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAGGAATGAAAATGGGAAAGGCAAGTGGTGCAGAGAAATGGTTTTTTGGGAAACGCGTCTGCAGAGGATATGAATCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACATTGTTACCAGATGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>ATTTACCTCCCTTTTCTTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAAT</canonical_amplicon>
		<polymorphic_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAAWGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28001</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>305149</contig_pos>
        <strand>+</strand>
        <context>AATCTAAWWG[C/T]MAGYTGAAGY</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATG</left_flank>
        <right_flank>CAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAGGAATGAAAATGGGAAAGGCAAGTGGTGCAGAGAAATGGTTTTTTGGGAAACGCGTCTGCAGAGGATATGAATCCAAAA</canonical>
            <polymorphic>CCTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGYCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAGGAATGAAAATGGGAAAGGCAAGTGGTGCAGAGAAATGGTTTTTTGGGAAACGCGTCTGCAGAGGATATGAATCCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACATTGTTACCAGATGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>AAATTTACCTCCCTTTTCTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTT</canonical_amplicon>
		<polymorphic_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGYCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28002</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>305150</contig_pos>
        <strand>+</strand>
        <context>ATCTAAWWGY[A/C]AGYTGAAGYT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGT</left_flank>
        <right_flank>AGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAGGAATGAAAATGGGAAAGGCAAGTGGTGCAGAGAAATGGTTTTTTGGGAAACGCGTCTGCAGAGGATATGAATCCAAAAA</canonical>
            <polymorphic>CTTTGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTMAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAGGAATGAAAATGGGAAAGGCAAGTGGTGCAGAGAAATGGTTTTTTGGGAAACGCGTCTGCAGAGGATATGAATCCAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACATTGTTACCAGATGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>AAATTTACCTCCCTTTTCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTT</canonical_amplicon>
		<polymorphic_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTMAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28003</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>305153</contig_pos>
        <strand>+</strand>
        <context>TAAWWGYMAG[C/T]TGAAGYTCAR</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAG</left_flank>
        <right_flank>TGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAGGAATGAAAATGGGAAAGGCAAGTGGTGCAGAGAAATGGTTTTTTGGGAAACGCGTCTGCAGAGGATATGAATCCAAAAAATG</canonical>
            <polymorphic>TGAATCAGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGYTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAGGAATGAAAATGGGAAAGGCAAGTGGTGCAGAGAAATGGTTTTTTGGGAAACGCGTCTGCAGAGGATATGAATCCAAAAAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>287 284 211 132 80 6</canonical_bands>
                <polymorphic_bands>287 284 211 132 86</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>211 169 136 123 115 80 44 40 33 28 15 6</canonical_bands>
                <polymorphic_bands>211 169 136 123 115 86 44 40 33 28 15</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACATTGTTACCAGATGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>CGAAATTTACCTCCCTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCG</canonical_amplicon>
		<polymorphic_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGYTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28004</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>305159</contig_pos>
        <strand>+</strand>
        <context>YMAGYTGAAG[C/T]TCARAAATCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAG</left_flank>
        <right_flank>TCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAGGAATGAAAATGGGAAAGGCAAGTGGTGCAGAGAAATGGTTTTTTGGGAAACGCGTCTGCAGAGGATATGAATCCAAAAAATGAGCCAA</canonical>
            <polymorphic>AGGATTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGYTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAGGAATGAAAATGGGAAAGGCAAGTGGTGCAGAGAAATGGTTTTTTGGGAAACGCGTCTGCAGAGGATATGAATCCAAAAAATGAGCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>287 284 217 126 80 6</canonical_bands>
                <polymorphic_bands>290 287 217 126 80</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>213 169 136 123 115 80 44 40 33 28 9 6 4</canonical_bands>
                <polymorphic_bands>213 169 136 123 121 80 44 40 33 28 9 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACATTGTTACCAGATGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>GATTCAAATCGAAATTTACCTC</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATC</canonical_amplicon>
		<polymorphic_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGYTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28005</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>305163</contig_pos>
        <strand>+</strand>
        <context>YTGAAGYTCA[A/G]AAATCTGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCA</left_flank>
        <right_flank>AAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAGGAATGAAAATGGGAAAGGCAAGTGGTGCAGAGAAATGGTTTTTTGGGAAACGCGTCTGCAGAGGATATGAATCCAAAAAATGAGCCAAATAA</canonical>
            <polymorphic>TTAGGCTGCGAGAGAAATATGTAGTCAATAGAGACGATGACTGAGCCGAAAAGATACACTGGACCAAATTCTTAGTTAGATTAGGCAAGCCAAATAGATGATGAGCAGATGCAGAAACGGAGCTCAAATACCTATCGGATATGGGCGGAGCCAGTAATGCCAACTACTGTAGACTCCGCCCCCTAGAGCAAAAAGGTGTTATACCAATCTGTTGACCTTTATTTATGGCGTCATACTCAACTGTTGCGCGTCTCCTTCTTCTAGGTCACGCGGCCGCTCGTTGACACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCARAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAATTGCAAAAAAGTGAGGAGCGAAGCGACAAATAATAATAAAACTTCCATTTCGGTCGGCCGAAAATCTCCGACCGCCGCCTGTCCACCGACCGAATTCGTGCTAGAAAAAATTAGAGGCAGATGTTACAATTAGTGAATGGAGGTTACCTATGGGTGAATCTGAGCAAAAATAGGAAAACAACACTTTGATATTACTGTAAAGACAAATATCAGGAACTCTCTGAAGCTATATAAGCGACTGATAAGAAGCGGCATTTATGTACCTTGTCAAAAAAAGGTCGCTCTTTTTGATGGATGAAGTAAGAATACGAGGCAAACACCTTTTCTATTTTCTAAGAAAAATGGGAGAGTGCAGGAATGAAAATGGGAAAGGCAAGTGGTGCAGAGAAATGGTTTTTTGGGAAACGCGTCTGCAGAGGATATGAATCCAAAAAATGAGCCAAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACATTGTTACCAGATGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>TTGATTCAAATCGAAATTTACC</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCAAAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAA</canonical_amplicon>
		<polymorphic_amplicon>CACATTGTTACCAGATGTTATGATCTGGTAATTCGATACACACCTAGCAGACGCCAAAGAGGGGAGCATGGTGGAATAAGATATGGTATTAGCAGAGGTGACAACTTGTTTTGAAATCAGAAAAGCTAGTGGGATGTTCGAAAATTTGGAAGTTCAGAAGTTCAGAAATTCGCATTTCAGAAAAAAGTTATAATCTAAATGTCAGCTGAAGCTCARAAATCTGAAAAAGAGAAAGAAAGAAAAGGGAGGTAAATTTCGATTTGAATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28006</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>373255</contig_pos>
        <strand>+</strand>
        <context>TCTAAAGACC[A/T]TAAAATTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACC</left_flank>
        <right_flank>TAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAGCCCACCCTATATGTGCGCTTTGAGCTCAATTATCTCGGTTCCTATGAGAGATATGAAAAAGTTGTCAACTGATAAAATGTTGGCGATATAATGATAAACATTTTAGCAGATAGCTATTTTTTAATATCTTTTGAAAGAACCGAGATAATTAAACTTGAAGTAACGGTTTGGGTTTTTCAGCTTTTTAATTTTACCGACCACTGTGTTCCCTTGATTGACCCTAATCATACTTCCGCAGTTTGAGCTCAACTATCTCAATTCTCATGAGAGATACCAAAAATTTGTCAATTATAAAATATGGGTGATATTATGATAAATAATGTATCAGTTAAAAAATTGATTTCTTGGGTGGACATCTGTTAGAGCATTTACGGTAACCAAAAGTAAATCTTCATTTTTCAAAACTTTTGTAACATAAATCCTAGAACTTCCTTTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCG</canonical>
            <polymorphic>AGAAGCCCACCCTATATGTGCGCTTTGAGCTCAATTATCTCGGTTCCTATGAGAGATATGAAAAAGTTGTCAACTGATAAAATGTTGGCGATATAATGATAAACATTTTAGCAGATAGCTATTTTTTAATATCTTTTGAAAGAACCGAGATAATTAAACTTGAAGTAACGGTTTGGGTTTTTCAGCTTTTTAATTTTACCGACCACTGTGTTCCCTTGATTGACCCTAATCATACTTCCGCAGTTTGAGCTCAACTATCTCAATTCTCATGAGAGATACCAAAAATTTGTCAATTATAAAATATGGGTGATATTATGATAAATAATGTATCAGTTAAAAAATTGATTTCTTGGGTGGACATCTGTTAGAGCATTTACGGTAACCAAAAGTAAATCTTCATTTTTCAAAACTTTTGTAACATAAATCCTAGAACTTCCTTTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCWTAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTACGGTAACCAAAAGTAAA</pcr_primer_p1>
		<pcr_primer_p2>GCTTTTTATAATCAAACAAAATGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CATTTACGGTAACCAAAAGTAAATCTTCATTTTTCAAAACTTTTGTAACATAAATCCTAGAACTTCCTTTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGC</canonical_amplicon>
		<polymorphic_amplicon>CATTTACGGTAACCAAAAGTAAATCTTCATTTTTCAAAACTTTTGTAACATAAATCCTAGAACTTCCTTTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCWTAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28007</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>373282</contig_pos>
        <strand>+</strand>
        <context>GGATGTTCAG[A/C]AAAAAAAGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAG</left_flank>
        <right_flank>AAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTCAATTATCTCGGTTCCTATGAGAGATATGAAAAAGTTGTCAACTGATAAAATGTTGGCGATATAATGATAAACATTTTAGCAGATAGCTATTTTTTAATATCTTTTGAAAGAACCGAGATAATTAAACTTGAAGTAACGGTTTGGGTTTTTCAGCTTTTTAATTTTACCGACCACTGTGTTCCCTTGATTGACCCTAATCATACTTCCGCAGTTTGAGCTCAACTATCTCAATTCTCATGAGAGATACCAAAAATTTGTCAATTATAAAATATGGGTGATATTATGATAAATAATGTATCAGTTAAAAAATTGATTTCTTGGGTGGACATCTGTTAGAGCATTTACGGTAACCAAAAGTAAATCTTCATTTTTCAAAACTTTTGTAACATAAATCCTAGAACTTCCTTTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACG</canonical>
            <polymorphic>AGCTCAATTATCTCGGTTCCTATGAGAGATATGAAAAAGTTGTCAACTGATAAAATGTTGGCGATATAATGATAAACATTTTAGCAGATAGCTATTTTTTAATATCTTTTGAAAGAACCGAGATAATTAAACTTGAAGTAACGGTTTGGGTTTTTCAGCTTTTTAATTTTACCGACCACTGTGTTCCCTTGATTGACCCTAATCATACTTCCGCAGTTTGAGCTCAACTATCTCAATTCTCATGAGAGATACCAAAAATTTGTCAATTATAAAATATGGGTGATATTATGATAAATAATGTATCAGTTAAAAAATTGATTTCTTGGGTGGACATCTGTTAGAGCATTTACGGTAACCAAAAGTAAATCTTCATTTTTCAAAACTTTTGTAACATAAATCCTAGAACTTCCTTTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGMAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>498 188 153 63 43 38 17</canonical_bands>
                <polymorphic_bands>686 153 63 43 38 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTTACGGTAACCAAAAGTAAA</pcr_primer_p1>
		<pcr_primer_p2>GCTTTTTATAATCAAACAAAATGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CATTTACGGTAACCAAAAGTAAATCTTCATTTTTCAAAACTTTTGTAACATAAATCCTAGAACTTCCTTTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGC</canonical_amplicon>
		<polymorphic_amplicon>CATTTACGGTAACCAAAAGTAAATCTTCATTTTTCAAAACTTTTGTAACATAAATCCTAGAACTTCCTTTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGMAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28008</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>373474</contig_pos>
        <strand>+</strand>
        <context>TTTCTGATAT[C/T]YATTKMAGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATAT</left_flank>
        <right_flank>CATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGACCCTAATCATACTTCCGCAGTTTGAGCTCAACTATCTCAATTCTCATGAGAGATACCAAAAATTTGTCAATTATAAAATATGGGTGATATTATGATAAATAATGTATCAGTTAAAAAATTGATTTCTTGGGTGGACATCTGTTAGAGCATTTACGGTAACCAAAAGTAAATCTTCATTTTTCAAAACTTTTGTAACATAAATCCTAGAACTTCCTTTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAG</canonical>
            <polymorphic>TTGACCCTAATCATACTTCCGCAGTTTGAGCTCAACTATCTCAATTCTCATGAGAGATACCAAAAATTTGTCAATTATAAAATATGGGTGATATTATGATAAATAATGTATCAGTTAAAAAATTGATTTCTTGGGTGGACATCTGTTAGAGCATTTACGGTAACCAAAAGTAAATCTTCATTTTTCAAAACTTTTGTAACATAAATCCTAGAACTTCCTTTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATYCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGGTAAAGGCTGTGATAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTACCCATTTGTCAGGAATAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAA</canonical_amplicon>
		<polymorphic_amplicon>TATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATYCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28009</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>373475</contig_pos>
        <strand>+</strand>
        <context>TTCTGATATY[C/T]ATTKMAGGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATT</left_flank>
        <right_flank>ATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACCCTAATCATACTTCCGCAGTTTGAGCTCAACTATCTCAATTCTCATGAGAGATACCAAAAATTTGTCAATTATAAAATATGGGTGATATTATGATAAATAATGTATCAGTTAAAAAATTGATTTCTTGGGTGGACATCTGTTAGAGCATTTACGGTAACCAAAAGTAAATCTTCATTTTTCAAAACTTTTGTAACATAAATCCTAGAACTTCCTTTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGT</canonical>
            <polymorphic>TGACCCTAATCATACTTCCGCAGTTTGAGCTCAACTATCTCAATTCTCATGAGAGATACCAAAAATTTGTCAATTATAAAATATGGGTGATATTATGATAAATAATGTATCAGTTAAAAAATTGATTTCTTGGGTGGACATCTGTTAGAGCATTTACGGTAACCAAAAGTAAATCTTCATTTTTCAAAACTTTTGTAACATAAATCCTAGAACTTCCTTTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTYATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGGTAAAGGCTGTGATAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTACCCATTTGTCAGGAATAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAA</canonical_amplicon>
		<polymorphic_amplicon>TATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTYATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28010</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>373479</contig_pos>
        <strand>+</strand>
        <context>GATATYYATT[G/T]MAGGAACYGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATT</left_flank>
        <right_flank>CAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTAATCATACTTCCGCAGTTTGAGCTCAACTATCTCAATTCTCATGAGAGATACCAAAAATTTGTCAATTATAAAATATGGGTGATATTATGATAAATAATGTATCAGTTAAAAAATTGATTTCTTGGGTGGACATCTGTTAGAGCATTTACGGTAACCAAAAGTAAATCTTCATTTTTCAAAACTTTTGTAACATAAATCCTAGAACTTCCTTTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGTCCGA</canonical>
            <polymorphic>CCTAATCATACTTCCGCAGTTTGAGCTCAACTATCTCAATTCTCATGAGAGATACCAAAAATTTGTCAATTATAAAATATGGGTGATATTATGATAAATAATGTATCAGTTAAAAAATTGATTTCTTGGGTGGACATCTGTTAGAGCATTTACGGTAACCAAAAGTAAATCTTCATTTTTCAAAACTTTTGTAACATAAATCCTAGAACTTCCTTTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTKCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGTCCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>284 200 151 134 76 47 44 25 23 16</canonical_bands>
                <polymorphic_bands>284 227 200 134 47 44 25 23 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGGTAAAGGCTGTGATAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTACCCATTTGTCAGGAATAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAA</canonical_amplicon>
		<polymorphic_amplicon>TATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTKCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28011</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>373480</contig_pos>
        <strand>+</strand>
        <context>ATATYYATTK[A/C]AGGAACYGAR</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTT</left_flank>
        <right_flank>AGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAATCATACTTCCGCAGTTTGAGCTCAACTATCTCAATTCTCATGAGAGATACCAAAAATTTGTCAATTATAAAATATGGGTGATATTATGATAAATAATGTATCAGTTAAAAAATTGATTTCTTGGGTGGACATCTGTTAGAGCATTTACGGTAACCAAAAGTAAATCTTCATTTTTCAAAACTTTTGTAACATAAATCCTAGAACTTCCTTTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGTCCGAT</canonical>
            <polymorphic>CTAATCATACTTCCGCAGTTTGAGCTCAACTATCTCAATTCTCATGAGAGATACCAAAAATTTGTCAATTATAAAATATGGGTGATATTATGATAAATAATGTATCAGTTAAAAAATTGATTTCTTGGGTGGACATCTGTTAGAGCATTTACGGTAACCAAAAGTAAATCTTCATTTTTCAAAACTTTTGTAACATAAATCCTAGAACTTCCTTTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTMAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGTCCGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAGNNNCTG</site>
                <isoschizomers>
                    <enzyme>AlwNI</enzyme>
                    <enzyme>CaiI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>284 200 151 134 76 47 43 26 23 16</canonical_bands>
                <polymorphic_bands>284 227 200 134 47 43 26 23 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGGTAAAGGCTGTGATAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTACCCATTTGTCAGGAATAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAA</canonical_amplicon>
		<polymorphic_amplicon>TATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTMAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28012</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>373487</contig_pos>
        <strand>+</strand>
        <context>TTKMAGGAAC[C/T]GARWTAATTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAAC</left_flank>
        <right_flank>GAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTTCCGCAGTTTGAGCTCAACTATCTCAATTCTCATGAGAGATACCAAAAATTTGTCAATTATAAAATATGGGTGATATTATGATAAATAATGTATCAGTTAAAAAATTGATTTCTTGGGTGGACATCTGTTAGAGCATTTACGGTAACCAAAAGTAAATCTTCATTTTTCAAAACTTTTGTAACATAAATCCTAGAACTTCCTTTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGTCCGATTTTTGGT</canonical>
            <polymorphic>TACTTCCGCAGTTTGAGCTCAACTATCTCAATTCTCATGAGAGATACCAAAAATTTGTCAATTATAAAATATGGGTGATATTATGATAAATAATGTATCAGTTAAAAAATTGATTTCTTGGGTGGACATCTGTTAGAGCATTTACGGTAACCAAAAGTAAATCTTCATTTTTCAAAACTTTTGTAACATAAATCCTAGAACTTCCTTTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACYGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGTCCGATTTTTGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAGNNNCTG</site>
                <isoschizomers>
                    <enzyme>AlwNI</enzyme>
                    <enzyme>CaiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>418 304 197 81</canonical_bands>
                <polymorphic_bands>418 304 278</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGGTAAAGGCTGTGATAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTACCCATTTGTCAGGAATAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAA</canonical_amplicon>
		<polymorphic_amplicon>TATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACYGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28013</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>373490</contig_pos>
        <strand>+</strand>
        <context>MAGGAACYGA[A/G]WTAATTAGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGA</left_flank>
        <right_flank>ATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCGCAGTTTGAGCTCAACTATCTCAATTCTCATGAGAGATACCAAAAATTTGTCAATTATAAAATATGGGTGATATTATGATAAATAATGTATCAGTTAAAAAATTGATTTCTTGGGTGGACATCTGTTAGAGCATTTACGGTAACCAAAAGTAAATCTTCATTTTTCAAAACTTTTGTAACATAAATCCTAGAACTTCCTTTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGTCCGATTTTTGGTGGC</canonical>
            <polymorphic>TTCCGCAGTTTGAGCTCAACTATCTCAATTCTCATGAGAGATACCAAAAATTTGTCAATTATAAAATATGGGTGATATTATGATAAATAATGTATCAGTTAAAAAATTGATTTCTTGGGTGGACATCTGTTAGAGCATTTACGGTAACCAAAAGTAAATCTTCATTTTTCAAAACTTTTGTAACATAAATCCTAGAACTTCCTTTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGARATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGTCCGATTTTTGGTGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>415 307 197 81</canonical_bands>
                <polymorphic_bands>415 307 278</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGGTAAAGGCTGTGATAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTACCCATTTGTCAGGAATAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAA</canonical_amplicon>
		<polymorphic_amplicon>TATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGARATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28014</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>373491</contig_pos>
        <strand>+</strand>
        <context>AGGAACYGAR[A/T]TAATTAGGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAG</left_flank>
        <right_flank>TAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCGCAGTTTGAGCTCAACTATCTCAATTCTCATGAGAGATACCAAAAATTTGTCAATTATAAAATATGGGTGATATTATGATAAATAATGTATCAGTTAAAAAATTGATTTCTTGGGTGGACATCTGTTAGAGCATTTACGGTAACCAAAAGTAAATCTTCATTTTTCAAAACTTTTGTAACATAAATCCTAGAACTTCCTTTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGTCCGATTTTTGGTGGCC</canonical>
            <polymorphic>TCCGCAGTTTGAGCTCAACTATCTCAATTCTCATGAGAGATACCAAAAATTTGTCAATTATAAAATATGGGTGATATTATGATAAATAATGTATCAGTTAAAAAATTGATTTCTTGGGTGGACATCTGTTAGAGCATTTACGGTAACCAAAAGTAAATCTTCATTTTTCAAAACTTTTGTAACATAAATCCTAGAACTTCCTTTTTTGTTTTGGTCCATCTCATCCAACATCCAGAACATAAGGATTTTCAGTTCTAAAGACCATAAAATTTCATCATCCGGATGTTCAGAAAAAAAAGATTTATCCATTGTTTTCACAAGTTTTTTACCCTTTCCTACCGGTTTCTCTTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGWTAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGTCCGATTTTTGGTGGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGGTAAAGGCTGTGATAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTACCCATTTGTCAGGAATAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAA</canonical_amplicon>
		<polymorphic_amplicon>TATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGWTAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28015</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>373839</contig_pos>
        <strand>+</strand>
        <context>ACTGCAGAAG[A/T]TTTTTTCTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAG</left_flank>
        <right_flank>TTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGTCCGATTTTTGGTGGCCTAGGATGATTTTCTAGGCCATTGTTTATGACTTTTGAAAATACCTCAATTCAGAGTTATCGTTCTTGAAATGGAGAAGCTCTGAACATACAGAAAAAGTATTTTTCAGTGTCATTTTAATTGTTTTCAGGAGTTTGAAACTCGGCTGTCAAGTCTCCGAACACTTTGAAAATTTTGTGGGGGTGTAAAACAGACCTAGATTCAAAACTGCATTCACAAAGTTTTTGAAAACCCCTAGTTTTCAGGTATTTTCCAATTTTTGAAAGGCACATGTTCGTTCACGTCTTCAGTACAAAAAACCGGTCAAAAATGGGTGTCCTTCAGAAATCTGAAAAACTAGGAATTTTCA</canonical>
            <polymorphic>TTTTTTCCCTCATTTTGTTTGATTATAAAAAGCTCTAATTTATGAGTTTAAAGATTTTTTATCTCCTGAGGGAGCCGAGATATGGTAAAGGCTGTGATAGAAGTGTCCCTTTTCAATTGAAAGTTTTCTGATATTCATTTCAGGAACTGAGATAATTAGGGTCAATTATGATAGGTTTTCAAACGAATTTCTGAAAAATTCGTTTTTTTTCCTCCCTTTTTTCTGCATCACCATTATTTTCAGTCGACTTGGGGAACCCTATAATTTTTCCTTCCCTAGAATCTCCGTCTTCTAGAATACGAGCCCTGCTTATTCCTGACAAATGGGTAACTCGTTGTCTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGWTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTGATGTTTTGATCTTGACCTGTTGTTGTCAGGATAAACACGTTGAGAAGTCCGATTTTTGGTGGCCTAGGATGATTTTCTAGGCCATTGTTTATGACTTTTGAAAATACCTCAATTCAGAGTTATCGTTCTTGAAATGGAGAAGCTCTGAACATACAGAAAAAGTATTTTTCAGTGTCATTTTAATTGTTTTCAGGAGTTTGAAACTCGGCTGTCAAGTCTCCGAACACTTTGAAAATTTTGTGGGGGTGTAAAACAGACCTAGATTCAAAACTGCATTCACAAAGTTTTTGAAAACCCCTAGTTTTCAGGTATTTTCCAATTTTTGAAAGGCACATGTTCGTTCACGTCTTCAGTACAAAAAACCGGTCAAAAATGGGTGTCCTTCAGAAATCTGAAAAACTAGGAATTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCTCTGAGTATTTGCATTTC</pcr_primer_p1>
		<pcr_primer_p2>CAATTTAATCTTTGGGATACACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGTTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTG</canonical_amplicon>
		<polymorphic_amplicon>CTCCTCTGAGTATTTGCATTTCGAATGACGCAGGTATTGGATTTCCTTCAGAATTCCCCCCTCATCTGACGTTCTTCGGTCATCGGTTCCTTGTTCATTTCCACGTCTTCTTCTTTCTCATCATAGGAAGTAGACTAGTGACACAGGAGGCACTGCAGAAGWTTTTTTCTCACGTAACATGAAAAACATTAGGGAAATATGTATCCAAAAATAAATTAACAAATTCGTGTGTATCCCAAAGATTAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28016</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>435304</contig_pos>
        <strand>+</strand>
        <context>TCACTCAAAG[G/T]TAAATTCGMT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACCCTTTTTAACAACCTGTACAAATACACTTTGGTGTTCTCACTCAAAG</left_flank>
        <right_flank>TAAATTCGCTGTGCTAATAGCTCTCGAATAGAATTCCATATCATCTGACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACAATGTGAAACGTGTCAAGTGATTTGGAGAAGTGCTCACGGAAGGTTTTCTCACCGGCATTGCTGGAAAATTTTCAAGCTTTGAGAATAATGAAAAAAAACTTACTGCCAGAAGTTCATTGCATTCGTATAATAATACTCTCTCTTTCCTGGTATTGTGAAATTTGCATCAAAATTGATCACAAAATGCTCTCGTTTTTCTTTGGTATACTGTAGCCAAGGCTGATCTTCAGACAATCTTGGGTTTCCAAAATTTATAAAATTGGCGAACATTCCAGTATACATGTGCTCAATAATATAATCTTTTGGGGCAAAAACGCCCCGATGTGTTCCAAAAACGTAGATAAAATCTTCAGAATGATGTGGGGATGGAACATTCAGATACTTGTTGAATGCACGTCCGGCTCCGCTGTAGGCATAACTGTAAAAAATACAATAGAGATACAGTAACCCTTTTTAACAACCTGTACAAATACACTTTGGTGTTCTCACTCAAAGGTAAATTCGCTGTGCTAATAGCTCTCGAATAGAATTCCATATCATCTGACAAGTATTGGGCTTGTGTGTCATTTCCGTAATATCTCACACATTGATCTACAAATCTTTCCGGCTCCTTGTAAATTTCAAAGCCAATATGTTCGCAAACATCTTTCAAAAGTTCCTCCTGATTATTTGCATTTTTTGGTTCATTGATGTATCTGTAACCAAAAAGTTTAGAACGTTTTATTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCAGTCGCCCTCGCCTTTATGTATGCAATCGGGCAGCGGCTTTCTCTTTGCACGCGTAGCTCAGTCGGTAGCGGCGCCGCACCTTCAACACTCGCCTCGACAAGTTCAACTCCTTGAGGAGCATATTTAAACGAAATTTCGACAACATTATTTTTCTCATGTCCCCCCACCTTT</canonical>
            <polymorphic>GACAATGTGAAACGTGTCAAGTGATTTGGAGAAGTGCTCACGGAAGGTTTTCTCACCGGCATTGCTGGAAAATTTTCAAGCTTTGAGAATAATGAAAAAAAACTTACTGCCAGAAGTTCATTGCATTCGTATAATAATACTCTCTCTTTCCTGGTATTGTGAAATTTGCATCAAAATTGATCACAAAATGCTCTCGTTTTTCTTTGGTATACTGTAGCCAAGGCTGATCTTCAGACAATCTTGGGTTTCCAAAATTTATAAAATTGGCGAACATTCCAGTATACATGTGCTCAATAATATAATCTTTTGGGGCAAAAACGCCCCGATGTGTTCCAAAAACGTAGATAAAATCTTCAGAATGATGTGGGGATGGAACATTCAGATACTTGTTGAATGCACGTCCGGCTCCGCTGTAGGCATAACTGTAAAAAATACAATAGAGATACAGTAACCCTTTTTAACAACCTGTACAAATACACTTTGGTGTTCTCACTCAAAGKTAAATTCGCTGTGCTAATAGCTCTCGAATAGAATTCCATATCATCTGACAAGTATTGGGCTTGTGTGTCATTTCCGTAATATCTCACACATTGATCTACAAATCTTTCCGGCTCCTTGTAAATTTCAAAGCCAATATGTTCGCAAACATCTTTCAAAAGTTCCTCCTGATTATTTGCATTTTTTGGTTCATTGATGTATCTGTAACCAAAAAGTTTAGAACGTTTTATTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCAGTCGCCCTCGCCTTTATGTATGCAATCGGGCAGCGGCTTTCTCTTTGCACGCGTAGCTCAGTCGGTAGCGGCGCCGCACCTTCAACACTCGCCTCGACAAGTTCAACTCCTTGAGGAGCATATTTAAACGAAATTTCGACAACATTATTTTTCTCATGTCCCCCCACCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACGTAGATAAAATCTTCAGAATG</pcr_primer_p1>
		<pcr_primer_p2>GAGATATTACGGAAATGACACAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAACGTAGATAAAATCTTCAGAATGATGTGGGGATGGAACATTCAGATACTTGTTGAATGCACGTCCGGCTCCGCTGTAGGCATAACTGTAAAAAATACAATAGAGATACAGTAACCCTTTTTAACAACCTGTACAAATACACTTTGGTGTTCTCACTCAAAGGTAAATTCGCTGTGCTAATAGCTCTCGAATAGAATTCCATATCATCTGACAAGTATTGGGCTTGTGTGTCATTTCCGTAATATCTC</canonical_amplicon>
		<polymorphic_amplicon>AAACGTAGATAAAATCTTCAGAATGATGTGGGGATGGAACATTCAGATACTTGTTGAATGCACGTCCGGCTCCGCTGTAGGCATAACTGTAAAAAATACAATAGAGATACAGTAACCCTTTTTAACAACCTGTACAAATACACTTTGGTGTTCTCACTCAAAGKTAAATTCGCTGTGCTAATAGCTCTCGAATAGAATTCCATATCATCTGACAAGTATTGGGCTTGTGTGTCATTTCCGTAATATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28017</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>435313</contig_pos>
        <strand>+</strand>
        <context>GKTAAATTCG[A/C]TGTGCTAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAACAACCTGTACAAATACACTTTGGTGTTCTCACTCAAAGGTAAATTCG</left_flank>
        <right_flank>TGTGCTAATAGCTCTCGAATAGAATTCCATATCATCTGACAAGTATTGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACGTGTCAAGTGATTTGGAGAAGTGCTCACGGAAGGTTTTCTCACCGGCATTGCTGGAAAATTTTCAAGCTTTGAGAATAATGAAAAAAAACTTACTGCCAGAAGTTCATTGCATTCGTATAATAATACTCTCTCTTTCCTGGTATTGTGAAATTTGCATCAAAATTGATCACAAAATGCTCTCGTTTTTCTTTGGTATACTGTAGCCAAGGCTGATCTTCAGACAATCTTGGGTTTCCAAAATTTATAAAATTGGCGAACATTCCAGTATACATGTGCTCAATAATATAATCTTTTGGGGCAAAAACGCCCCGATGTGTTCCAAAAACGTAGATAAAATCTTCAGAATGATGTGGGGATGGAACATTCAGATACTTGTTGAATGCACGTCCGGCTCCGCTGTAGGCATAACTGTAAAAAATACAATAGAGATACAGTAACCCTTTTTAACAACCTGTACAAATACACTTTGGTGTTCTCACTCAAAGGTAAATTCGCTGTGCTAATAGCTCTCGAATAGAATTCCATATCATCTGACAAGTATTGGGCTTGTGTGTCATTTCCGTAATATCTCACACATTGATCTACAAATCTTTCCGGCTCCTTGTAAATTTCAAAGCCAATATGTTCGCAAACATCTTTCAAAAGTTCCTCCTGATTATTTGCATTTTTTGGTTCATTGATGTATCTGTAACCAAAAAGTTTAGAACGTTTTATTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCAGTCGCCCTCGCCTTTATGTATGCAATCGGGCAGCGGCTTTCTCTTTGCACGCGTAGCTCAGTCGGTAGCGGCGCCGCACCTTCAACACTCGCCTCGACAAGTTCAACTCCTTGAGGAGCATATTTAAACGAAATTTCGACAACATTATTTTTCTCATGTCCCCCCACCTTTAATGCTTTT</canonical>
            <polymorphic>AAACGTGTCAAGTGATTTGGAGAAGTGCTCACGGAAGGTTTTCTCACCGGCATTGCTGGAAAATTTTCAAGCTTTGAGAATAATGAAAAAAAACTTACTGCCAGAAGTTCATTGCATTCGTATAATAATACTCTCTCTTTCCTGGTATTGTGAAATTTGCATCAAAATTGATCACAAAATGCTCTCGTTTTTCTTTGGTATACTGTAGCCAAGGCTGATCTTCAGACAATCTTGGGTTTCCAAAATTTATAAAATTGGCGAACATTCCAGTATACATGTGCTCAATAATATAATCTTTTGGGGCAAAAACGCCCCGATGTGTTCCAAAAACGTAGATAAAATCTTCAGAATGATGTGGGGATGGAACATTCAGATACTTGTTGAATGCACGTCCGGCTCCGCTGTAGGCATAACTGTAAAAAATACAATAGAGATACAGTAACCCTTTTTAACAACCTGTACAAATACACTTTGGTGTTCTCACTCAAAGGTAAATTCGMTGTGCTAATAGCTCTCGAATAGAATTCCATATCATCTGACAAGTATTGGGCTTGTGTGTCATTTCCGTAATATCTCACACATTGATCTACAAATCTTTCCGGCTCCTTGTAAATTTCAAAGCCAATATGTTCGCAAACATCTTTCAAAAGTTCCTCCTGATTATTTGCATTTTTTGGTTCATTGATGTATCTGTAACCAAAAAGTTTAGAACGTTTTATTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCAGTCGCCCTCGCCTTTATGTATGCAATCGGGCAGCGGCTTTCTCTTTGCACGCGTAGCTCAGTCGGTAGCGGCGCCGCACCTTCAACACTCGCCTCGACAAGTTCAACTCCTTGAGGAGCATATTTAAACGAAATTTCGACAACATTATTTTTCTCATGTCCCCCCACCTTTAATGCTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACGTAGATAAAATCTTCAGAATG</pcr_primer_p1>
		<pcr_primer_p2>GAGATATTACGGAAATGACACAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAACGTAGATAAAATCTTCAGAATGATGTGGGGATGGAACATTCAGATACTTGTTGAATGCACGTCCGGCTCCGCTGTAGGCATAACTGTAAAAAATACAATAGAGATACAGTAACCCTTTTTAACAACCTGTACAAATACACTTTGGTGTTCTCACTCAAAGGTAAATTCGCTGTGCTAATAGCTCTCGAATAGAATTCCATATCATCTGACAAGTATTGGGCTTGTGTGTCATTTCCGTAATATCTC</canonical_amplicon>
		<polymorphic_amplicon>AAACGTAGATAAAATCTTCAGAATGATGTGGGGATGGAACATTCAGATACTTGTTGAATGCACGTCCGGCTCCGCTGTAGGCATAACTGTAAAAAATACAATAGAGATACAGTAACCCTTTTTAACAACCTGTACAAATACACTTTGGTGTTCTCACTCAAAGGTAAATTCGMTGTGCTAATAGCTCTCGAATAGAATTCCATATCATCTGACAAGTATTGGGCTTGTGTGTCATTTCCGTAATATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28018</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>435454</contig_pos>
        <strand>+</strand>
        <context>TCGCAAACAT[C/T]TTTCAAAAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATCTTTCCGGCTCCTTGTAAATTTCAAAGCCAATATGTTCGCAAACAT</left_flank>
        <right_flank>TTTCAAAAGTTCCTCCTGATTATTTGCATTTTTTGGTTCATTGATGTATC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGTATTGTGAAATTTGCATCAAAATTGATCACAAAATGCTCTCGTTTTTCTTTGGTATACTGTAGCCAAGGCTGATCTTCAGACAATCTTGGGTTTCCAAAATTTATAAAATTGGCGAACATTCCAGTATACATGTGCTCAATAATATAATCTTTTGGGGCAAAAACGCCCCGATGTGTTCCAAAAACGTAGATAAAATCTTCAGAATGATGTGGGGATGGAACATTCAGATACTTGTTGAATGCACGTCCGGCTCCGCTGTAGGCATAACTGTAAAAAATACAATAGAGATACAGTAACCCTTTTTAACAACCTGTACAAATACACTTTGGTGTTCTCACTCAAAGGTAAATTCGCTGTGCTAATAGCTCTCGAATAGAATTCCATATCATCTGACAAGTATTGGGCTTGTGTGTCATTTCCGTAATATCTCACACATTGATCTACAAATCTTTCCGGCTCCTTGTAAATTTCAAAGCCAATATGTTCGCAAACATCTTTCAAAAGTTCCTCCTGATTATTTGCATTTTTTGGTTCATTGATGTATCTGTAACCAAAAAGTTTAGAACGTTTTATTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCAGTCGCCCTCGCCTTTATGTATGCAATCGGGCAGCGGCTTTCTCTTTGCACGCGTAGCTCAGTCGGTAGCGGCGCCGCACCTTCAACACTCGCCTCGACAAGTTCAACTCCTTGAGGAGCATATTTAAACGAAATTTCGACAACATTATTTTTCTCATGTCCCCCCACCTTTAATGCTTTTTGCATTACATGTTATCCCGAAGCTCAGCTGTGGTGATACCAATCATAGTGTTGATCGGAAAAACTGAATTATCACGAAAAACGTTGTCAGGGTAGTCTACTATAAACTGAAGTAGCCAATTTTGAAATTAATGGAAATTTG</canonical>
            <polymorphic>CTGGTATTGTGAAATTTGCATCAAAATTGATCACAAAATGCTCTCGTTTTTCTTTGGTATACTGTAGCCAAGGCTGATCTTCAGACAATCTTGGGTTTCCAAAATTTATAAAATTGGCGAACATTCCAGTATACATGTGCTCAATAATATAATCTTTTGGGGCAAAAACGCCCCGATGTGTTCCAAAAACGTAGATAAAATCTTCAGAATGATGTGGGGATGGAACATTCAGATACTTGTTGAATGCACGTCCGGCTCCGCTGTAGGCATAACTGTAAAAAATACAATAGAGATACAGTAACCCTTTTTAACAACCTGTACAAATACACTTTGGTGTTCTCACTCAAAGGTAAATTCGCTGTGCTAATAGCTCTCGAATAGAATTCCATATCATCTGACAAGTATTGGGCTTGTGTGTCATTTCCGTAATATCTCACACATTGATCTACAAATCTTTCCGGCTCCTTGTAAATTTCAAAGCCAATATGTTCGCAAACATYTTTCAAAAGTTCCTCCTGATTATTTGCATTTTTTGGTTCATTGATGTATCTGTAACCAAAAAGTTTAGAACGTTTTATTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCAGTCGCCCTCGCCTTTATGTATGCAATCGGGCAGCGGCTTTCTCTTTGCACGCGTAGCTCAGTCGGTAGCGGCGCCGCACCTTCAACACTCGCCTCGACAAGTTCAACTCCTTGAGGAGCATATTTAAACGAAATTTCGACAACATTATTTTTCTCATGTCCCCCCACCTTTAATGCTTTTTGCATTACATGTTATCCCGAAGCTCAGCTGTGGTGATACCAATCATAGTGTTGATCGGAAAAACTGAATTATCACGAAAAACGTTGTCAGGGTAGTCTACTATAAACTGAAGTAGCCAATTTTGAAATTAATGGAAATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATACACTTTGGTGTTCTCACTC</pcr_primer_p1>
		<pcr_primer_p2>CGTTCTAAACTTTTTGGTTACAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATACACTTTGGTGTTCTCACTCAAAGGTAAATTCGCTGTGCTAATAGCTCTCGAATAGAATTCCATATCATCTGACAAGTATTGGGCTTGTGTGTCATTTCCGTAATATCTCACACATTGATCTACAAATCTTTCCGGCTCCTTGTAAATTTCAAAGCCAATATGTTCGCAAACATCTTTCAAAAGTTCCTCCTGATTATTTGCATTTTTTGGTTCATTGATGTATCTGTAACCAAAAAGTTTAGAACG</canonical_amplicon>
		<polymorphic_amplicon>AATACACTTTGGTGTTCTCACTCAAAGGTAAATTCGCTGTGCTAATAGCTCTCGAATAGAATTCCATATCATCTGACAAGTATTGGGCTTGTGTGTCATTTCCGTAATATCTCACACATTGATCTACAAATCTTTCCGGCTCCTTGTAAATTTCAAAGCCAATATGTTCGCAAACATYTTTCAAAAGTTCCTCCTGATTATTTGCATTTTTTGGTTCATTGATGTATCTGTAACCAAAAAGTTTAGAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28019</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>435478</contig_pos>
        <strand>+</strand>
        <context>TCCTGATTAT[C/T]TGCATTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAAAGCCAATATGTTCGCAAACATCTTTCAAAAGTTCCTCCTGATTAT</left_flank>
        <right_flank>TGCATTTTTTGGTTCATTGATGTATCTGTAACCAAAAAGTTTAGAACGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGATCACAAAATGCTCTCGTTTTTCTTTGGTATACTGTAGCCAAGGCTGATCTTCAGACAATCTTGGGTTTCCAAAATTTATAAAATTGGCGAACATTCCAGTATACATGTGCTCAATAATATAATCTTTTGGGGCAAAAACGCCCCGATGTGTTCCAAAAACGTAGATAAAATCTTCAGAATGATGTGGGGATGGAACATTCAGATACTTGTTGAATGCACGTCCGGCTCCGCTGTAGGCATAACTGTAAAAAATACAATAGAGATACAGTAACCCTTTTTAACAACCTGTACAAATACACTTTGGTGTTCTCACTCAAAGGTAAATTCGCTGTGCTAATAGCTCTCGAATAGAATTCCATATCATCTGACAAGTATTGGGCTTGTGTGTCATTTCCGTAATATCTCACACATTGATCTACAAATCTTTCCGGCTCCTTGTAAATTTCAAAGCCAATATGTTCGCAAACATCTTTCAAAAGTTCCTCCTGATTATTTGCATTTTTTGGTTCATTGATGTATCTGTAACCAAAAAGTTTAGAACGTTTTATTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCAGTCGCCCTCGCCTTTATGTATGCAATCGGGCAGCGGCTTTCTCTTTGCACGCGTAGCTCAGTCGGTAGCGGCGCCGCACCTTCAACACTCGCCTCGACAAGTTCAACTCCTTGAGGAGCATATTTAAACGAAATTTCGACAACATTATTTTTCTCATGTCCCCCCACCTTTAATGCTTTTTGCATTACATGTTATCCCGAAGCTCAGCTGTGGTGATACCAATCATAGTGTTGATCGGAAAAACTGAATTATCACGAAAAACGTTGTCAGGGTAGTCTACTATAAACTGAAGTAGCCAATTTTGAAATTAATGGAAATTTGGTACAGTACCTCTCCATCAACATT</canonical>
            <polymorphic>AATTGATCACAAAATGCTCTCGTTTTTCTTTGGTATACTGTAGCCAAGGCTGATCTTCAGACAATCTTGGGTTTCCAAAATTTATAAAATTGGCGAACATTCCAGTATACATGTGCTCAATAATATAATCTTTTGGGGCAAAAACGCCCCGATGTGTTCCAAAAACGTAGATAAAATCTTCAGAATGATGTGGGGATGGAACATTCAGATACTTGTTGAATGCACGTCCGGCTCCGCTGTAGGCATAACTGTAAAAAATACAATAGAGATACAGTAACCCTTTTTAACAACCTGTACAAATACACTTTGGTGTTCTCACTCAAAGGTAAATTCGCTGTGCTAATAGCTCTCGAATAGAATTCCATATCATCTGACAAGTATTGGGCTTGTGTGTCATTTCCGTAATATCTCACACATTGATCTACAAATCTTTCCGGCTCCTTGTAAATTTCAAAGCCAATATGTTCGCAAACATCTTTCAAAAGTTCCTCCTGATTATYTGCATTTTTTGGTTCATTGATGTATCTGTAACCAAAAAGTTTAGAACGTTTTATTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCAGTCGCCCTCGCCTTTATGTATGCAATCGGGCAGCGGCTTTCTCTTTGCACGCGTAGCTCAGTCGGTAGCGGCGCCGCACCTTCAACACTCGCCTCGACAAGTTCAACTCCTTGAGGAGCATATTTAAACGAAATTTCGACAACATTATTTTTCTCATGTCCCCCCACCTTTAATGCTTTTTGCATTACATGTTATCCCGAAGCTCAGCTGTGGTGATACCAATCATAGTGTTGATCGGAAAAACTGAATTATCACGAAAAACGTTGTCAGGGTAGTCTACTATAAACTGAAGTAGCCAATTTTGAAATTAATGGAAATTTGGTACAGTACCTCTCCATCAACATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCGTAATATCTCACACATTGAT</pcr_primer_p1>
		<pcr_primer_p2>CAGAGTGACATTAAGCGTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCCGTAATATCTCACACATTGATCTACAAATCTTTCCGGCTCCTTGTAAATTTCAAAGCCAATATGTTCGCAAACATCTTTCAAAAGTTCCTCCTGATTATTTGCATTTTTTGGTTCATTGATGTATCTGTAACCAAAAAGTTTAGAACGTTTTATTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTG</canonical_amplicon>
		<polymorphic_amplicon>TCCGTAATATCTCACACATTGATCTACAAATCTTTCCGGCTCCTTGTAAATTTCAAAGCCAATATGTTCGCAAACATCTTTCAAAAGTTCCTCCTGATTATYTGCATTTTTTGGTTCATTGATGTATCTGTAACCAAAAAGTTTAGAACGTTTTATTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28020</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>437905</contig_pos>
        <strand>+</strand>
        <context>CCGGACGGTA[C/T]GATTTTGTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAGAAGTAATAATACTTACGTGGCATTGCTCATACAAGCCGGACGGTA</left_flank>
        <right_flank>GATTTTGTCTCCAGAATCCCCTTCCAAGGAGTTTGTGGTTTTGGTTTATG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGCATTCAATTAGAGGCTGACACTTTATTGTTCGGAGCTAATTTCTACTGAAACTTATCACAAAAGTGCTCGATTTTCAATTCTTTCATAAAATGACTTTCGAAGTTTTCTTGATTTTTTTAGAAACTTTCGAAATTCAATATTATCCTGACACATTTTTTACAAATACAGTACCTCTTCTAAGCTTGAATAAACTAGAAAACCAGAAAATGATTATTTGAGTTATTCTTTAACTTTTACCACAGTGACATCAAATCCGCAGTGGCATTATACTAGGGGCTGCCACTCTATTGTTCGGAGGTGCTCTGAGGTGGTATATTAGAGGCTGGCATTCAGTTAGGGGTGGCTTTCTAATAGAGTTTTTACGGTAACTTCTACTTTAAGACATTTCTGAGTCTTCCTGATCTATGAATGTTGTTGTTAATGTGAGTTTTGAGGTTTTCTAGGTTAAGAAGTAATAATACTTACGTGGCATTGCTCATACAAGCCGGACGGTATGATTTTGTCTCCAGAATCCCCTTCCAAGGAGTTTGTGGTTTTGGTTTATGGAATCGAAGATTTCCTAACGGAGGAGCGACATATGGAATACCAAGAAACACAATTGCAGATTGATTACCTAATGGAGAGTATGTGGCGTTGAGGACTTTTCCTTCGATTTGACCGCTTCTGCCAAATACGAGTTTCTGGAAATTAACGATAAATAAGAGAACTTACGATAAGAGAATCCTTTTGGACAATATTGTGTTCGCTATAATGACAAATAGGACTGTTCGAAAAAAAACATATGAATGAAAATCGTCCTTGTTAGAATGACTGAATACAAAATTTGTTGATAACAGAGAGACACAAGTAGGACATGAGACACAGACTACAGTGGAGAACTTTTTTGATGTGTTGGCCCACAGAAGTCACACGATTTGGAATTCAGAATTTGTTTTAACTTTTTATGAGGAAACATGAAATCAATTAACACATTCAAAATATTAATTTTCCGATTG</canonical>
            <polymorphic>GTGGCATTCAATTAGAGGCTGACACTTTATTGTTCGGAGCTAATTTCTACTGAAACTTATCACAAAAGTGCTCGATTTTCAATTCTTTCATAAAATGACTTTCGAAGTTTTCTTGATTTTTTTAGAAACTTTCGAAATTCAATATTATCCTGACACATTTTTTACAAATACAGTACCTCTTCTAAGCTTGAATAAACTAGAAAACCAGAAAATGATTATTTGAGTTATTCTTTAACTTTTACCACAGTGACATCAAATCCGCAGTGGCATTATACTAGGGGCTGCCACTCTATTGTTCGGAGGTGCTCTGAGGTGGTATATTAGAGGCTGGCATTCAGTTAGGGGTGGCTTTCTAATAGAGTTTTTACGGTAACTTCTACTTTAAGACATTTCTGAGTCTTCCTGATCTATGAATGTTGTTGTTAATGTGAGTTTTGAGGTTTTCTAGGTTAAGAAGTAATAATACTTACGTGGCATTGCTCATACAAGCCGGACGGTAYGATTTTGTCTCCAGAATCCCCTTCCAAGGAGTTTGTGGTTTTGGTTTATGGAATCGAAGATTTCCTAACGGAGGAGCGACATATGGAATACCAAGAAACACAATTGCAGATTGATTACCTAATGGAGAGTATGTGGCGTTGAGGACTTTTCCTTCGATTTGACCGCTTCTGCCAAATACGAGTTTCTGGAAATTAACGATAAATAAGAGAACTTACGATAAGAGAATCCTTTTGGACAATATTGTGTTCGCTATAATGACAAATAGGACTGTTCGAAAAAAAACATATGAATGAAAATCGTCCTTGTTAGAATGACTGAATACAAAATTTGTTGATAACAGAGAGACACAAGTAGGACATGAGACACAGACTACAGTGGAGAACTTTTTTGATGTGTTGGCCCACAGAAGTCACACGATTTGGAATTCAGAATTTGTTTTAACTTTTTATGAGGAAACATGAAATCAATTAACACATTCAAAATATTAATTTTCCGATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTGAGTCTTCCTGATCTATG</pcr_primer_p1>
		<pcr_primer_p2>CACATACTCTCCATTAGGTAATCA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTCTGAGTCTTCCTGATCTATGAATGTTGTTGTTAATGTGAGTTTTGAGGTTTTCTAGGTTAAGAAGTAATAATACTTACGTGGCATTGCTCATACAAGCCGGACGGTATGATTTTGTCTCCAGAATCCCCTTCCAAGGAGTTTGTGGTTTTGGTTTATGGAATCGAAGATTTCCTAACGGAGGAGCGACATATGGAATACCAAGAAACACAATTGCAGATTGATTACCTAATGGAGAGTATGTG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTGAGTCTTCCTGATCTATGAATGTTGTTGTTAATGTGAGTTTTGAGGTTTTCTAGGTTAAGAAGTAATAATACTTACGTGGCATTGCTCATACAAGCCGGACGGTAYGATTTTGTCTCCAGAATCCCCTTCCAAGGAGTTTGTGGTTTTGGTTTATGGAATCGAAGATTTCCTAACGGAGGAGCGACATATGGAATACCAAGAAACACAATTGCAGATTGATTACCTAATGGAGAGTATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28021</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>438041</contig_pos>
        <strand>+</strand>
        <context>AGAGTATGTG[C/G]CGTTGAGGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAATACCAAGAAACACAATTGCAGATTGATTACCTAATGGAGAGTATGTG</left_flank>
        <right_flank>CGTTGAGGACTTTTCCTTCGATTTGACCGCTTCTGCCAAATACGAGTTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCAATATTATCCTGACACATTTTTTACAAATACAGTACCTCTTCTAAGCTTGAATAAACTAGAAAACCAGAAAATGATTATTTGAGTTATTCTTTAACTTTTACCACAGTGACATCAAATCCGCAGTGGCATTATACTAGGGGCTGCCACTCTATTGTTCGGAGGTGCTCTGAGGTGGTATATTAGAGGCTGGCATTCAGTTAGGGGTGGCTTTCTAATAGAGTTTTTACGGTAACTTCTACTTTAAGACATTTCTGAGTCTTCCTGATCTATGAATGTTGTTGTTAATGTGAGTTTTGAGGTTTTCTAGGTTAAGAAGTAATAATACTTACGTGGCATTGCTCATACAAGCCGGACGGTATGATTTTGTCTCCAGAATCCCCTTCCAAGGAGTTTGTGGTTTTGGTTTATGGAATCGAAGATTTCCTAACGGAGGAGCGACATATGGAATACCAAGAAACACAATTGCAGATTGATTACCTAATGGAGAGTATGTGGCGTTGAGGACTTTTCCTTCGATTTGACCGCTTCTGCCAAATACGAGTTTCTGGAAATTAACGATAAATAAGAGAACTTACGATAAGAGAATCCTTTTGGACAATATTGTGTTCGCTATAATGACAAATAGGACTGTTCGAAAAAAAACATATGAATGAAAATCGTCCTTGTTAGAATGACTGAATACAAAATTTGTTGATAACAGAGAGACACAAGTAGGACATGAGACACAGACTACAGTGGAGAACTTTTTTGATGTGTTGGCCCACAGAAGTCACACGATTTGGAATTCAGAATTTGTTTTAACTTTTTATGAGGAAACATGAAATCAATTAACACATTCAAAATATTAATTTTCCGATTGGGATTAGGATTTTTGAAACAAAGATACAAATTCAATTTGAGCAGAAATACAATCAACGGCTTTAGAAAAGAGGATTCGTTGCAAACTTATCGCATCGGTATGCATGTCTGGCAAAGTTCCATAGCTGAAATAAAAA</canonical>
            <polymorphic>ATTCAATATTATCCTGACACATTTTTTACAAATACAGTACCTCTTCTAAGCTTGAATAAACTAGAAAACCAGAAAATGATTATTTGAGTTATTCTTTAACTTTTACCACAGTGACATCAAATCCGCAGTGGCATTATACTAGGGGCTGCCACTCTATTGTTCGGAGGTGCTCTGAGGTGGTATATTAGAGGCTGGCATTCAGTTAGGGGTGGCTTTCTAATAGAGTTTTTACGGTAACTTCTACTTTAAGACATTTCTGAGTCTTCCTGATCTATGAATGTTGTTGTTAATGTGAGTTTTGAGGTTTTCTAGGTTAAGAAGTAATAATACTTACGTGGCATTGCTCATACAAGCCGGACGGTATGATTTTGTCTCCAGAATCCCCTTCCAAGGAGTTTGTGGTTTTGGTTTATGGAATCGAAGATTTCCTAACGGAGGAGCGACATATGGAATACCAAGAAACACAATTGCAGATTGATTACCTAATGGAGAGTATGTGSCGTTGAGGACTTTTCCTTCGATTTGACCGCTTCTGCCAAATACGAGTTTCTGGAAATTAACGATAAATAAGAGAACTTACGATAAGAGAATCCTTTTGGACAATATTGTGTTCGCTATAATGACAAATAGGACTGTTCGAAAAAAAACATATGAATGAAAATCGTCCTTGTTAGAATGACTGAATACAAAATTTGTTGATAACAGAGAGACACAAGTAGGACATGAGACACAGACTACAGTGGAGAACTTTTTTGATGTGTTGGCCCACAGAAGTCACACGATTTGGAATTCAGAATTTGTTTTAACTTTTTATGAGGAAACATGAAATCAATTAACACATTCAAAATATTAATTTTCCGATTGGGATTAGGATTTTTGAAACAAAGATACAAATTCAATTTGAGCAGAAATACAATCAACGGCTTTAGAAAAGAGGATTCGTTGCAAACTTATCGCATCGGTATGCATGTCTGGCAAAGTTCCATAGCTGAAATAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTTTGTGGTTTTGGTTTATG</pcr_primer_p1>
		<pcr_primer_p2>CGAACAGTCCTATTTGTCATTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAGTTTGTGGTTTTGGTTTATGGAATCGAAGATTTCCTAACGGAGGAGCGACATATGGAATACCAAGAAACACAATTGCAGATTGATTACCTAATGGAGAGTATGTGGCGTTGAGGACTTTTCCTTCGATTTGACCGCTTCTGCCAAATACGAGTTTCTGGAAATTAACGATAAATAAGAGAACTTACGATAAGAGAATCCTTTTGGACAATATTGTGTTCGCTATAATGACAAATAGGACTGTTCG</canonical_amplicon>
		<polymorphic_amplicon>GAGTTTGTGGTTTTGGTTTATGGAATCGAAGATTTCCTAACGGAGGAGCGACATATGGAATACCAAGAAACACAATTGCAGATTGATTACCTAATGGAGAGTATGTGSCGTTGAGGACTTTTCCTTCGATTTGACCGCTTCTGCCAAATACGAGTTTCTGGAAATTAACGATAAATAAGAGAACTTACGATAAGAGAATCCTTTTGGACAATATTGTGTTCGCTATAATGACAAATAGGACTGTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28022</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>438116</contig_pos>
        <strand>+</strand>
        <context>AAATAAGAGA[A/T]CTTACGATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACCGCTTCTGCCAAATACGAGTTTCTGGAAATTAACGATAAATAAGAGA</left_flank>
        <right_flank>CTTACGATAAGAGAATCCTTTTGGACAATATTGTGTTCGCTATAATGACA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGATTATTTGAGTTATTCTTTAACTTTTACCACAGTGACATCAAATCCGCAGTGGCATTATACTAGGGGCTGCCACTCTATTGTTCGGAGGTGCTCTGAGGTGGTATATTAGAGGCTGGCATTCAGTTAGGGGTGGCTTTCTAATAGAGTTTTTACGGTAACTTCTACTTTAAGACATTTCTGAGTCTTCCTGATCTATGAATGTTGTTGTTAATGTGAGTTTTGAGGTTTTCTAGGTTAAGAAGTAATAATACTTACGTGGCATTGCTCATACAAGCCGGACGGTATGATTTTGTCTCCAGAATCCCCTTCCAAGGAGTTTGTGGTTTTGGTTTATGGAATCGAAGATTTCCTAACGGAGGAGCGACATATGGAATACCAAGAAACACAATTGCAGATTGATTACCTAATGGAGAGTATGTGGCGTTGAGGACTTTTCCTTCGATTTGACCGCTTCTGCCAAATACGAGTTTCTGGAAATTAACGATAAATAAGAGAACTTACGATAAGAGAATCCTTTTGGACAATATTGTGTTCGCTATAATGACAAATAGGACTGTTCGAAAAAAAACATATGAATGAAAATCGTCCTTGTTAGAATGACTGAATACAAAATTTGTTGATAACAGAGAGACACAAGTAGGACATGAGACACAGACTACAGTGGAGAACTTTTTTGATGTGTTGGCCCACAGAAGTCACACGATTTGGAATTCAGAATTTGTTTTAACTTTTTATGAGGAAACATGAAATCAATTAACACATTCAAAATATTAATTTTCCGATTGGGATTAGGATTTTTGAAACAAAGATACAAATTCAATTTGAGCAGAAATACAATCAACGGCTTTAGAAAAGAGGATTCGTTGCAAACTTATCGCATCGGTATGCATGTCTGGCAAAGTTCCATAGCTGAAATAAAAAATTGTTATGCTTATCTTACTGAAATAAAACTCACAATGCTCACGAATTCCGCATCACTTTGCCCACAAACTTCTC</canonical>
            <polymorphic>ATGATTATTTGAGTTATTCTTTAACTTTTACCACAGTGACATCAAATCCGCAGTGGCATTATACTAGGGGCTGCCACTCTATTGTTCGGAGGTGCTCTGAGGTGGTATATTAGAGGCTGGCATTCAGTTAGGGGTGGCTTTCTAATAGAGTTTTTACGGTAACTTCTACTTTAAGACATTTCTGAGTCTTCCTGATCTATGAATGTTGTTGTTAATGTGAGTTTTGAGGTTTTCTAGGTTAAGAAGTAATAATACTTACGTGGCATTGCTCATACAAGCCGGACGGTATGATTTTGTCTCCAGAATCCCCTTCCAAGGAGTTTGTGGTTTTGGTTTATGGAATCGAAGATTTCCTAACGGAGGAGCGACATATGGAATACCAAGAAACACAATTGCAGATTGATTACCTAATGGAGAGTATGTGGCGTTGAGGACTTTTCCTTCGATTTGACCGCTTCTGCCAAATACGAGTTTCTGGAAATTAACGATAAATAAGAGAWCTTACGATAAGAGAATCCTTTTGGACAATATTGTGTTCGCTATAATGACAAATAGGACTGTTCGAAAAAAAACATATGAATGAAAATCGTCCTTGTTAGAATGACTGAATACAAAATTTGTTGATAACAGAGAGACACAAGTAGGACATGAGACACAGACTACAGTGGAGAACTTTTTTGATGTGTTGGCCCACAGAAGTCACACGATTTGGAATTCAGAATTTGTTTTAACTTTTTATGAGGAAACATGAAATCAATTAACACATTCAAAATATTAATTTTCCGATTGGGATTAGGATTTTTGAAACAAAGATACAAATTCAATTTGAGCAGAAATACAATCAACGGCTTTAGAAAAGAGGATTCGTTGCAAACTTATCGCATCGGTATGCATGTCTGGCAAAGTTCCATAGCTGAAATAAAAAATTGTTATGCTTATCTTACTGAAATAAAACTCACAATGCTCACGAATTCCGCATCACTTTGCCCACAAACTTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATTACCTAATGGAGAGTATGTG</pcr_primer_p1>
		<pcr_primer_p2>TGTCCTACTTGTGTCTCTCTGTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGATTACCTAATGGAGAGTATGTGGCGTTGAGGACTTTTCCTTCGATTTGACCGCTTCTGCCAAATACGAGTTTCTGGAAATTAACGATAAATAAGAGAACTTACGATAAGAGAATCCTTTTGGACAATATTGTGTTCGCTATAATGACAAATAGGACTGTTCGAAAAAAAACATATGAATGAAAATCGTCCTTGTTAGAATGACTGAATACAAAATTTGTTGATAACAGAGAGACACAAGTAGGACA</canonical_amplicon>
		<polymorphic_amplicon>TGATTACCTAATGGAGAGTATGTGGCGTTGAGGACTTTTCCTTCGATTTGACCGCTTCTGCCAAATACGAGTTTCTGGAAATTAACGATAAATAAGAGAWCTTACGATAAGAGAATCCTTTTGGACAATATTGTGTTCGCTATAATGACAAATAGGACTGTTCGAAAAAAAACATATGAATGAAAATCGTCCTTGTTAGAATGACTGAATACAAAATTTGTTGATAACAGAGAGACACAAGTAGGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28023</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>438146</contig_pos>
        <strand>+</strand>
        <context>TTTGGACAAT[A/G]TTGTGTTCGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTAACGATAAATAAGAGAACTTACGATAAGAGAATCCTTTTGGACAAT</left_flank>
        <right_flank>TTGTGTTCGCTATAATGACAAATAGGACTGTTCGAAAAAAAACATATGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCACAGTGACATCAAATCCGCAGTGGCATTATACTAGGGGCTGCCACTCTATTGTTCGGAGGTGCTCTGAGGTGGTATATTAGAGGCTGGCATTCAGTTAGGGGTGGCTTTCTAATAGAGTTTTTACGGTAACTTCTACTTTAAGACATTTCTGAGTCTTCCTGATCTATGAATGTTGTTGTTAATGTGAGTTTTGAGGTTTTCTAGGTTAAGAAGTAATAATACTTACGTGGCATTGCTCATACAAGCCGGACGGTATGATTTTGTCTCCAGAATCCCCTTCCAAGGAGTTTGTGGTTTTGGTTTATGGAATCGAAGATTTCCTAACGGAGGAGCGACATATGGAATACCAAGAAACACAATTGCAGATTGATTACCTAATGGAGAGTATGTGGCGTTGAGGACTTTTCCTTCGATTTGACCGCTTCTGCCAAATACGAGTTTCTGGAAATTAACGATAAATAAGAGAACTTACGATAAGAGAATCCTTTTGGACAATATTGTGTTCGCTATAATGACAAATAGGACTGTTCGAAAAAAAACATATGAATGAAAATCGTCCTTGTTAGAATGACTGAATACAAAATTTGTTGATAACAGAGAGACACAAGTAGGACATGAGACACAGACTACAGTGGAGAACTTTTTTGATGTGTTGGCCCACAGAAGTCACACGATTTGGAATTCAGAATTTGTTTTAACTTTTTATGAGGAAACATGAAATCAATTAACACATTCAAAATATTAATTTTCCGATTGGGATTAGGATTTTTGAAACAAAGATACAAATTCAATTTGAGCAGAAATACAATCAACGGCTTTAGAAAAGAGGATTCGTTGCAAACTTATCGCATCGGTATGCATGTCTGGCAAAGTTCCATAGCTGAAATAAAAAATTGTTATGCTTATCTTACTGAAATAAAACTCACAATGCTCACGAATTCCGCATCACTTTGCCCACAAACTTCTCTCACTGAATCTACTGCGTGTTGAATATAGA</canonical>
            <polymorphic>CCACAGTGACATCAAATCCGCAGTGGCATTATACTAGGGGCTGCCACTCTATTGTTCGGAGGTGCTCTGAGGTGGTATATTAGAGGCTGGCATTCAGTTAGGGGTGGCTTTCTAATAGAGTTTTTACGGTAACTTCTACTTTAAGACATTTCTGAGTCTTCCTGATCTATGAATGTTGTTGTTAATGTGAGTTTTGAGGTTTTCTAGGTTAAGAAGTAATAATACTTACGTGGCATTGCTCATACAAGCCGGACGGTATGATTTTGTCTCCAGAATCCCCTTCCAAGGAGTTTGTGGTTTTGGTTTATGGAATCGAAGATTTCCTAACGGAGGAGCGACATATGGAATACCAAGAAACACAATTGCAGATTGATTACCTAATGGAGAGTATGTGGCGTTGAGGACTTTTCCTTCGATTTGACCGCTTCTGCCAAATACGAGTTTCTGGAAATTAACGATAAATAAGAGAACTTACGATAAGAGAATCCTTTTGGACAATRTTGTGTTCGCTATAATGACAAATAGGACTGTTCGAAAAAAAACATATGAATGAAAATCGTCCTTGTTAGAATGACTGAATACAAAATTTGTTGATAACAGAGAGACACAAGTAGGACATGAGACACAGACTACAGTGGAGAACTTTTTTGATGTGTTGGCCCACAGAAGTCACACGATTTGGAATTCAGAATTTGTTTTAACTTTTTATGAGGAAACATGAAATCAATTAACACATTCAAAATATTAATTTTCCGATTGGGATTAGGATTTTTGAAACAAAGATACAAATTCAATTTGAGCAGAAATACAATCAACGGCTTTAGAAAAGAGGATTCGTTGCAAACTTATCGCATCGGTATGCATGTCTGGCAAAGTTCCATAGCTGAAATAAAAAATTGTTATGCTTATCTTACTGAAATAAAACTCACAATGCTCACGAATTCCGCATCACTTTGCCCACAAACTTCTCTCACTGAATCTACTGCGTGTTGAATATAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 257 244</canonical_bands>
                <polymorphic_bands>743 257</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATTACCTAATGGAGAGTATGTG</pcr_primer_p1>
		<pcr_primer_p2>TGTCCTACTTGTGTCTCTCTGTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGATTACCTAATGGAGAGTATGTGGCGTTGAGGACTTTTCCTTCGATTTGACCGCTTCTGCCAAATACGAGTTTCTGGAAATTAACGATAAATAAGAGAACTTACGATAAGAGAATCCTTTTGGACAATATTGTGTTCGCTATAATGACAAATAGGACTGTTCGAAAAAAAACATATGAATGAAAATCGTCCTTGTTAGAATGACTGAATACAAAATTTGTTGATAACAGAGAGACACAAGTAGGACA</canonical_amplicon>
		<polymorphic_amplicon>TGATTACCTAATGGAGAGTATGTGGCGTTGAGGACTTTTCCTTCGATTTGACCGCTTCTGCCAAATACGAGTTTCTGGAAATTAACGATAAATAAGAGAACTTACGATAAGAGAATCCTTTTGGACAATRTTGTGTTCGCTATAATGACAAATAGGACTGTTCGAAAAAAAACATATGAATGAAAATCGTCCTTGTTAGAATGACTGAATACAAAATTTGTTGATAACAGAGAGACACAAGTAGGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28024</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>438284</contig_pos>
        <strand>+</strand>
        <context>GACTACAGTG[A/G]AGAACTTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGTTGATAACAGAGAGACACAAGTAGGACATGAGACACAGACTACAGTG</left_flank>
        <right_flank>AGAACTTTTTTGATGTGTTGGCCCACAGAAGTCACACGATTTGGAATTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTAAGACATTTCTGAGTCTTCCTGATCTATGAATGTTGTTGTTAATGTGAGTTTTGAGGTTTTCTAGGTTAAGAAGTAATAATACTTACGTGGCATTGCTCATACAAGCCGGACGGTATGATTTTGTCTCCAGAATCCCCTTCCAAGGAGTTTGTGGTTTTGGTTTATGGAATCGAAGATTTCCTAACGGAGGAGCGACATATGGAATACCAAGAAACACAATTGCAGATTGATTACCTAATGGAGAGTATGTGGCGTTGAGGACTTTTCCTTCGATTTGACCGCTTCTGCCAAATACGAGTTTCTGGAAATTAACGATAAATAAGAGAACTTACGATAAGAGAATCCTTTTGGACAATATTGTGTTCGCTATAATGACAAATAGGACTGTTCGAAAAAAAACATATGAATGAAAATCGTCCTTGTTAGAATGACTGAATACAAAATTTGTTGATAACAGAGAGACACAAGTAGGACATGAGACACAGACTACAGTGGAGAACTTTTTTGATGTGTTGGCCCACAGAAGTCACACGATTTGGAATTCAGAATTTGTTTTAACTTTTTATGAGGAAACATGAAATCAATTAACACATTCAAAATATTAATTTTCCGATTGGGATTAGGATTTTTGAAACAAAGATACAAATTCAATTTGAGCAGAAATACAATCAACGGCTTTAGAAAAGAGGATTCGTTGCAAACTTATCGCATCGGTATGCATGTCTGGCAAAGTTCCATAGCTGAAATAAAAAATTGTTATGCTTATCTTACTGAAATAAAACTCACAATGCTCACGAATTCCGCATCACTTTGCCCACAAACTTCTCTCACTGAATCTACTGCGTGTTGAATATAGAGACCAGAGTTTATGATCAAGCATTGGTGTTGTCGATCGACCTGAAAATAATGTTGAAAATTTGGTAATCGGAGAAAGTAACTGACATTTAATTCTAAAAATTCGAAAGCTCTGGTGATGGTGTCTTCAGCAAATGAGC</canonical>
            <polymorphic>CTTTAAGACATTTCTGAGTCTTCCTGATCTATGAATGTTGTTGTTAATGTGAGTTTTGAGGTTTTCTAGGTTAAGAAGTAATAATACTTACGTGGCATTGCTCATACAAGCCGGACGGTATGATTTTGTCTCCAGAATCCCCTTCCAAGGAGTTTGTGGTTTTGGTTTATGGAATCGAAGATTTCCTAACGGAGGAGCGACATATGGAATACCAAGAAACACAATTGCAGATTGATTACCTAATGGAGAGTATGTGGCGTTGAGGACTTTTCCTTCGATTTGACCGCTTCTGCCAAATACGAGTTTCTGGAAATTAACGATAAATAAGAGAACTTACGATAAGAGAATCCTTTTGGACAATATTGTGTTCGCTATAATGACAAATAGGACTGTTCGAAAAAAAACATATGAATGAAAATCGTCCTTGTTAGAATGACTGAATACAAAATTTGTTGATAACAGAGAGACACAAGTAGGACATGAGACACAGACTACAGTGRAGAACTTTTTTGATGTGTTGGCCCACAGAAGTCACACGATTTGGAATTCAGAATTTGTTTTAACTTTTTATGAGGAAACATGAAATCAATTAACACATTCAAAATATTAATTTTCCGATTGGGATTAGGATTTTTGAAACAAAGATACAAATTCAATTTGAGCAGAAATACAATCAACGGCTTTAGAAAAGAGGATTCGTTGCAAACTTATCGCATCGGTATGCATGTCTGGCAAAGTTCCATAGCTGAAATAAAAAATTGTTATGCTTATCTTACTGAAATAAAACTCACAATGCTCACGAATTCCGCATCACTTTGCCCACAAACTTCTCTCACTGAATCTACTGCGTGTTGAATATAGAGACCAGAGTTTATGATCAAGCATTGGTGTTGTCGATCGACCTGAAAATAATGTTGAAAATTTGGTAATCGGAGAAAGTAACTGACATTTAATTCTAAAAATTCGAAAGCTCTGGTGATGGTGTCTTCAGCAAATGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAGAGAATCCTTTTGGACAAT</pcr_primer_p1>
		<pcr_primer_p2>GATTTCATGTTTCCTCATAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATAAGAGAATCCTTTTGGACAATATTGTGTTCGCTATAATGACAAATAGGACTGTTCGAAAAAAAACATATGAATGAAAATCGTCCTTGTTAGAATGACTGAATACAAAATTTGTTGATAACAGAGAGACACAAGTAGGACATGAGACACAGACTACAGTGGAGAACTTTTTTGATGTGTTGGCCCACAGAAGTCACACGATTTGGAATTCAGAATTTGTTTTAACTTTTTATGAGGAAACATGAAATC</canonical_amplicon>
		<polymorphic_amplicon>ATAAGAGAATCCTTTTGGACAATATTGTGTTCGCTATAATGACAAATAGGACTGTTCGAAAAAAAACATATGAATGAAAATCGTCCTTGTTAGAATGACTGAATACAAAATTTGTTGATAACAGAGAGACACAAGTAGGACATGAGACACAGACTACAGTGRAGAACTTTTTTGATGTGTTGGCCCACAGAAGTCACACGATTTGGAATTCAGAATTTGTTTTAACTTTTTATGAGGAAACATGAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28025</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>438319</contig_pos>
        <strand>+</strand>
        <context>ACAGAAGTCA[C/T]ACGATTTGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACACAGACTACAGTGGAGAACTTTTTTGATGTGTTGGCCCACAGAAGTCA</left_flank>
        <right_flank>ACGATTTGGAATTCAGAATTTGTTTTAACTTTTTATGAGGAAACATGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTGTTGTTAATGTGAGTTTTGAGGTTTTCTAGGTTAAGAAGTAATAATACTTACGTGGCATTGCTCATACAAGCCGGACGGTATGATTTTGTCTCCAGAATCCCCTTCCAAGGAGTTTGTGGTTTTGGTTTATGGAATCGAAGATTTCCTAACGGAGGAGCGACATATGGAATACCAAGAAACACAATTGCAGATTGATTACCTAATGGAGAGTATGTGGCGTTGAGGACTTTTCCTTCGATTTGACCGCTTCTGCCAAATACGAGTTTCTGGAAATTAACGATAAATAAGAGAACTTACGATAAGAGAATCCTTTTGGACAATATTGTGTTCGCTATAATGACAAATAGGACTGTTCGAAAAAAAACATATGAATGAAAATCGTCCTTGTTAGAATGACTGAATACAAAATTTGTTGATAACAGAGAGACACAAGTAGGACATGAGACACAGACTACAGTGGAGAACTTTTTTGATGTGTTGGCCCACAGAAGTCACACGATTTGGAATTCAGAATTTGTTTTAACTTTTTATGAGGAAACATGAAATCAATTAACACATTCAAAATATTAATTTTCCGATTGGGATTAGGATTTTTGAAACAAAGATACAAATTCAATTTGAGCAGAAATACAATCAACGGCTTTAGAAAAGAGGATTCGTTGCAAACTTATCGCATCGGTATGCATGTCTGGCAAAGTTCCATAGCTGAAATAAAAAATTGTTATGCTTATCTTACTGAAATAAAACTCACAATGCTCACGAATTCCGCATCACTTTGCCCACAAACTTCTCTCACTGAATCTACTGCGTGTTGAATATAGAGACCAGAGTTTATGATCAAGCATTGGTGTTGTCGATCGACCTGAAAATAATGTTGAAAATTTGGTAATCGGAGAAAGTAACTGACATTTAATTCTAAAAATTCGAAAGCTCTGGTGATGGTGTCTTCAGCAAATGAGCCGGAATCAAGCAAACGTTTCTGACAAACGGAGGTT</canonical>
            <polymorphic>TGTTGTTGTTAATGTGAGTTTTGAGGTTTTCTAGGTTAAGAAGTAATAATACTTACGTGGCATTGCTCATACAAGCCGGACGGTATGATTTTGTCTCCAGAATCCCCTTCCAAGGAGTTTGTGGTTTTGGTTTATGGAATCGAAGATTTCCTAACGGAGGAGCGACATATGGAATACCAAGAAACACAATTGCAGATTGATTACCTAATGGAGAGTATGTGGCGTTGAGGACTTTTCCTTCGATTTGACCGCTTCTGCCAAATACGAGTTTCTGGAAATTAACGATAAATAAGAGAACTTACGATAAGAGAATCCTTTTGGACAATATTGTGTTCGCTATAATGACAAATAGGACTGTTCGAAAAAAAACATATGAATGAAAATCGTCCTTGTTAGAATGACTGAATACAAAATTTGTTGATAACAGAGAGACACAAGTAGGACATGAGACACAGACTACAGTGGAGAACTTTTTTGATGTGTTGGCCCACAGAAGTCAYACGATTTGGAATTCAGAATTTGTTTTAACTTTTTATGAGGAAACATGAAATCAATTAACACATTCAAAATATTAATTTTCCGATTGGGATTAGGATTTTTGAAACAAAGATACAAATTCAATTTGAGCAGAAATACAATCAACGGCTTTAGAAAAGAGGATTCGTTGCAAACTTATCGCATCGGTATGCATGTCTGGCAAAGTTCCATAGCTGAAATAAAAAATTGTTATGCTTATCTTACTGAAATAAAACTCACAATGCTCACGAATTCCGCATCACTTTGCCCACAAACTTCTCTCACTGAATCTACTGCGTGTTGAATATAGAGACCAGAGTTTATGATCAAGCATTGGTGTTGTCGATCGACCTGAAAATAATGTTGAAAATTTGGTAATCGGAGAAAGTAACTGACATTTAATTCTAAAAATTCGAAAGCTCTGGTGATGGTGTCTTCAGCAAATGAGCCGGAATCAAGCAAACGTTTCTGACAAACGGAGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>195 111 102 88 64 63 59 51 43 39 35 18 18 16 16 14 13 12 9 9 9 8 6 2</canonical_bands>
                <polymorphic_bands>195 111 102 88 70 64 63 51 43 39 35 18 18 16 16 14 13 12 9 9 8 6</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>495 408 97</canonical_bands>
                <polymorphic_bands>903 97</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAGAGAATCCTTTTGGACAAT</pcr_primer_p1>
		<pcr_primer_p2>ATTGATTTCATGTTTCCTCATAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATAAGAGAATCCTTTTGGACAATATTGTGTTCGCTATAATGACAAATAGGACTGTTCGAAAAAAAACATATGAATGAAAATCGTCCTTGTTAGAATGACTGAATACAAAATTTGTTGATAACAGAGAGACACAAGTAGGACATGAGACACAGACTACAGTGGAGAACTTTTTTGATGTGTTGGCCCACAGAAGTCACACGATTTGGAATTCAGAATTTGTTTTAACTTTTTATGAGGAAACATGAAATCAAT</canonical_amplicon>
		<polymorphic_amplicon>ATAAGAGAATCCTTTTGGACAATATTGTGTTCGCTATAATGACAAATAGGACTGTTCGAAAAAAAACATATGAATGAAAATCGTCCTTGTTAGAATGACTGAATACAAAATTTGTTGATAACAGAGAGACACAAGTAGGACATGAGACACAGACTACAGTGGAGAACTTTTTTGATGTGTTGGCCCACAGAAGTCAYACGATTTGGAATTCAGAATTTGTTTTAACTTTTTATGAGGAAACATGAAATCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28026</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>438476</contig_pos>
        <strand>+</strand>
        <context>TTTAGAAAAG[A/T]GGATTCGTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGATACAAATTCAATTTGAGCAGAAATACAATCAACGGCTTTAGAAAAG</left_flank>
        <right_flank>GGATTCGTTGCAAACTTATCGCATCGGTATGCATGTCTGGCAAAGTTCCA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGAGCGACATATGGAATACCAAGAAACACAATTGCAGATTGATTACCTAATGGAGAGTATGTGGCGTTGAGGACTTTTCCTTCGATTTGACCGCTTCTGCCAAATACGAGTTTCTGGAAATTAACGATAAATAAGAGAACTTACGATAAGAGAATCCTTTTGGACAATATTGTGTTCGCTATAATGACAAATAGGACTGTTCGAAAAAAAACATATGAATGAAAATCGTCCTTGTTAGAATGACTGAATACAAAATTTGTTGATAACAGAGAGACACAAGTAGGACATGAGACACAGACTACAGTGGAGAACTTTTTTGATGTGTTGGCCCACAGAAGTCACACGATTTGGAATTCAGAATTTGTTTTAACTTTTTATGAGGAAACATGAAATCAATTAACACATTCAAAATATTAATTTTCCGATTGGGATTAGGATTTTTGAAACAAAGATACAAATTCAATTTGAGCAGAAATACAATCAACGGCTTTAGAAAAGAGGATTCGTTGCAAACTTATCGCATCGGTATGCATGTCTGGCAAAGTTCCATAGCTGAAATAAAAAATTGTTATGCTTATCTTACTGAAATAAAACTCACAATGCTCACGAATTCCGCATCACTTTGCCCACAAACTTCTCTCACTGAATCTACTGCGTGTTGAATATAGAGACCAGAGTTTATGATCAAGCATTGGTGTTGTCGATCGACCTGAAAATAATGTTGAAAATTTGGTAATCGGAGAAAGTAACTGACATTTAATTCTAAAAATTCGAAAGCTCTGGTGATGGTGTCTTCAGCAAATGAGCCGGAATCAAGCAAACGTTTCTGACAAACGGAGGTTAACACTTTGAGAGGGGTTGAAGTGGAAGGTGGGGTAGTTGGAGTTGTCCAAAATGTTGGCTCAGTTACTGGTGGCTCAGTTTCAGTTGTTGTTGGAAGAAAGGTTGCATCTGTCTCAAGAGTTGGAAAGTCGGTAGTGAATTCTGGCCCAGAGGTGG</canonical>
            <polymorphic>AGGAGCGACATATGGAATACCAAGAAACACAATTGCAGATTGATTACCTAATGGAGAGTATGTGGCGTTGAGGACTTTTCCTTCGATTTGACCGCTTCTGCCAAATACGAGTTTCTGGAAATTAACGATAAATAAGAGAACTTACGATAAGAGAATCCTTTTGGACAATATTGTGTTCGCTATAATGACAAATAGGACTGTTCGAAAAAAAACATATGAATGAAAATCGTCCTTGTTAGAATGACTGAATACAAAATTTGTTGATAACAGAGAGACACAAGTAGGACATGAGACACAGACTACAGTGGAGAACTTTTTTGATGTGTTGGCCCACAGAAGTCACACGATTTGGAATTCAGAATTTGTTTTAACTTTTTATGAGGAAACATGAAATCAATTAACACATTCAAAATATTAATTTTCCGATTGGGATTAGGATTTTTGAAACAAAGATACAAATTCAATTTGAGCAGAAATACAATCAACGGCTTTAGAAAAGWGGATTCGTTGCAAACTTATCGCATCGGTATGCATGTCTGGCAAAGTTCCATAGCTGAAATAAAAAATTGTTATGCTTATCTTACTGAAATAAAACTCACAATGCTCACGAATTCCGCATCACTTTGCCCACAAACTTCTCTCACTGAATCTACTGCGTGTTGAATATAGAGACCAGAGTTTATGATCAAGCATTGGTGTTGTCGATCGACCTGAAAATAATGTTGAAAATTTGGTAATCGGAGAAAGTAACTGACATTTAATTCTAAAAATTCGAAAGCTCTGGTGATGGTGTCTTCAGCAAATGAGCCGGAATCAAGCAAACGTTTCTGACAAACGGAGGTTAACACTTTGAGAGGGGTTGAAGTGGAAGGTGGGGTAGTTGGAGTTGTCCAAAATGTTGGCTCAGTTACTGGTGGCTCAGTTTCAGTTGTTGTTGGAAGAAAGGTTGCATCTGTCTCAAGAGTTGGAAAGTCGGTAGTGAATTCTGGCCCAGAGGTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAATATTAATTTTCCGATTG</pcr_primer_p1>
		<pcr_primer_p2>GCAGTAGATTCAGTGAGAGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAAAATATTAATTTTCCGATTGGGATTAGGATTTTTGAAACAAAGATACAAATTCAATTTGAGCAGAAATACAATCAACGGCTTTAGAAAAGAGGATTCGTTGCAAACTTATCGCATCGGTATGCATGTCTGGCAAAGTTCCATAGCTGAAATAAAAAATTGTTATGCTTATCTTACTGAAATAAAACTCACAATGCTCACGAATTCCGCATCACTTTGCCCACAAACTTCTCTCACTGAATCTACTGC</canonical_amplicon>
		<polymorphic_amplicon>TCAAAATATTAATTTTCCGATTGGGATTAGGATTTTTGAAACAAAGATACAAATTCAATTTGAGCAGAAATACAATCAACGGCTTTAGAAAAGWGGATTCGTTGCAAACTTATCGCATCGGTATGCATGTCTGGCAAAGTTCCATAGCTGAAATAAAAAATTGTTATGCTTATCTTACTGAAATAAAACTCACAATGCTCACGAATTCCGCATCACTTTGCCCACAAACTTCTCTCACTGAATCTACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28027</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>438493</contig_pos>
        <strand>+</strand>
        <context>GTTGCAAACT[C/T]ATCGCATCGR</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAGCAGAAATACAATCAACGGCTTTAGAAAAGAGGATTCGTTGCAAACT</left_flank>
        <right_flank>ATCGCATCGGTATGCATGTCTGGCAAAGTTCCATAGCTGAAATAAAAAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACCAAGAAACACAATTGCAGATTGATTACCTAATGGAGAGTATGTGGCGTTGAGGACTTTTCCTTCGATTTGACCGCTTCTGCCAAATACGAGTTTCTGGAAATTAACGATAAATAAGAGAACTTACGATAAGAGAATCCTTTTGGACAATATTGTGTTCGCTATAATGACAAATAGGACTGTTCGAAAAAAAACATATGAATGAAAATCGTCCTTGTTAGAATGACTGAATACAAAATTTGTTGATAACAGAGAGACACAAGTAGGACATGAGACACAGACTACAGTGGAGAACTTTTTTGATGTGTTGGCCCACAGAAGTCACACGATTTGGAATTCAGAATTTGTTTTAACTTTTTATGAGGAAACATGAAATCAATTAACACATTCAAAATATTAATTTTCCGATTGGGATTAGGATTTTTGAAACAAAGATACAAATTCAATTTGAGCAGAAATACAATCAACGGCTTTAGAAAAGAGGATTCGTTGCAAACTTATCGCATCGGTATGCATGTCTGGCAAAGTTCCATAGCTGAAATAAAAAATTGTTATGCTTATCTTACTGAAATAAAACTCACAATGCTCACGAATTCCGCATCACTTTGCCCACAAACTTCTCTCACTGAATCTACTGCGTGTTGAATATAGAGACCAGAGTTTATGATCAAGCATTGGTGTTGTCGATCGACCTGAAAATAATGTTGAAAATTTGGTAATCGGAGAAAGTAACTGACATTTAATTCTAAAAATTCGAAAGCTCTGGTGATGGTGTCTTCAGCAAATGAGCCGGAATCAAGCAAACGTTTCTGACAAACGGAGGTTAACACTTTGAGAGGGGTTGAAGTGGAAGGTGGGGTAGTTGGAGTTGTCCAAAATGTTGGCTCAGTTACTGGTGGCTCAGTTTCAGTTGTTGTTGGAAGAAAGGTTGCATCTGTCTCAAGAGTTGGAAAGTCGGTAGTGAATTCTGGCCCAGAGGTGGATGGTTCAAATGTATTG</canonical>
            <polymorphic>TACCAAGAAACACAATTGCAGATTGATTACCTAATGGAGAGTATGTGGCGTTGAGGACTTTTCCTTCGATTTGACCGCTTCTGCCAAATACGAGTTTCTGGAAATTAACGATAAATAAGAGAACTTACGATAAGAGAATCCTTTTGGACAATATTGTGTTCGCTATAATGACAAATAGGACTGTTCGAAAAAAAACATATGAATGAAAATCGTCCTTGTTAGAATGACTGAATACAAAATTTGTTGATAACAGAGAGACACAAGTAGGACATGAGACACAGACTACAGTGGAGAACTTTTTTGATGTGTTGGCCCACAGAAGTCACACGATTTGGAATTCAGAATTTGTTTTAACTTTTTATGAGGAAACATGAAATCAATTAACACATTCAAAATATTAATTTTCCGATTGGGATTAGGATTTTTGAAACAAAGATACAAATTCAATTTGAGCAGAAATACAATCAACGGCTTTAGAAAAGAGGATTCGTTGCAAACTYATCGCATCGGTATGCATGTCTGGCAAAGTTCCATAGCTGAAATAAAAAATTGTTATGCTTATCTTACTGAAATAAAACTCACAATGCTCACGAATTCCGCATCACTTTGCCCACAAACTTCTCTCACTGAATCTACTGCGTGTTGAATATAGAGACCAGAGTTTATGATCAAGCATTGGTGTTGTCGATCGACCTGAAAATAATGTTGAAAATTTGGTAATCGGAGAAAGTAACTGACATTTAATTCTAAAAATTCGAAAGCTCTGGTGATGGTGTCTTCAGCAAATGAGCCGGAATCAAGCAAACGTTTCTGACAAACGGAGGTTAACACTTTGAGAGGGGTTGAAGTGGAAGGTGGGGTAGTTGGAGTTGTCCAAAATGTTGGCTCAGTTACTGGTGGCTCAGTTTCAGTTGTTGTTGGAAGAAAGGTTGCATCTGTCTCAAGAGTTGGAAAGTCGGTAGTGAATTCTGGCCCAGAGGTGGATGGTTCAAATGTATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAATATTAATTTTCCGATTG</pcr_primer_p1>
		<pcr_primer_p2>GCAGTAGATTCAGTGAGAGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAAAATATTAATTTTCCGATTGGGATTAGGATTTTTGAAACAAAGATACAAATTCAATTTGAGCAGAAATACAATCAACGGCTTTAGAAAAGAGGATTCGTTGCAAACTTATCGCATCGGTATGCATGTCTGGCAAAGTTCCATAGCTGAAATAAAAAATTGTTATGCTTATCTTACTGAAATAAAACTCACAATGCTCACGAATTCCGCATCACTTTGCCCACAAACTTCTCTCACTGAATCTACTGC</canonical_amplicon>
		<polymorphic_amplicon>TCAAAATATTAATTTTCCGATTGGGATTAGGATTTTTGAAACAAAGATACAAATTCAATTTGAGCAGAAATACAATCAACGGCTTTAGAAAAGAGGATTCGTTGCAAACTYATCGCATCGGTATGCATGTCTGGCAAAGTTCCATAGCTGAAATAAAAAATTGTTATGCTTATCTTACTGAAATAAAACTCACAATGCTCACGAATTCCGCATCACTTTGCCCACAAACTTCTCTCACTGAATCTACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28028</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>438503</contig_pos>
        <strand>+</strand>
        <context>YATCGCATCG[A/G]TATGCATGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACAATCAACGGCTTTAGAAAAGAGGATTCGTTGCAAACTTATCGCATCG</left_flank>
        <right_flank>TATGCATGTCTGGCAAAGTTCCATAGCTGAAATAAAAAATTGTTATGCTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACAATTGCAGATTGATTACCTAATGGAGAGTATGTGGCGTTGAGGACTTTTCCTTCGATTTGACCGCTTCTGCCAAATACGAGTTTCTGGAAATTAACGATAAATAAGAGAACTTACGATAAGAGAATCCTTTTGGACAATATTGTGTTCGCTATAATGACAAATAGGACTGTTCGAAAAAAAACATATGAATGAAAATCGTCCTTGTTAGAATGACTGAATACAAAATTTGTTGATAACAGAGAGACACAAGTAGGACATGAGACACAGACTACAGTGGAGAACTTTTTTGATGTGTTGGCCCACAGAAGTCACACGATTTGGAATTCAGAATTTGTTTTAACTTTTTATGAGGAAACATGAAATCAATTAACACATTCAAAATATTAATTTTCCGATTGGGATTAGGATTTTTGAAACAAAGATACAAATTCAATTTGAGCAGAAATACAATCAACGGCTTTAGAAAAGAGGATTCGTTGCAAACTTATCGCATCGGTATGCATGTCTGGCAAAGTTCCATAGCTGAAATAAAAAATTGTTATGCTTATCTTACTGAAATAAAACTCACAATGCTCACGAATTCCGCATCACTTTGCCCACAAACTTCTCTCACTGAATCTACTGCGTGTTGAATATAGAGACCAGAGTTTATGATCAAGCATTGGTGTTGTCGATCGACCTGAAAATAATGTTGAAAATTTGGTAATCGGAGAAAGTAACTGACATTTAATTCTAAAAATTCGAAAGCTCTGGTGATGGTGTCTTCAGCAAATGAGCCGGAATCAAGCAAACGTTTCTGACAAACGGAGGTTAACACTTTGAGAGGGGTTGAAGTGGAAGGTGGGGTAGTTGGAGTTGTCCAAAATGTTGGCTCAGTTACTGGTGGCTCAGTTTCAGTTGTTGTTGGAAGAAAGGTTGCATCTGTCTCAAGAGTTGGAAAGTCGGTAGTGAATTCTGGCCCAGAGGTGGATGGTTCAAATGTATTGAGTTCAGTGG</canonical>
            <polymorphic>CACAATTGCAGATTGATTACCTAATGGAGAGTATGTGGCGTTGAGGACTTTTCCTTCGATTTGACCGCTTCTGCCAAATACGAGTTTCTGGAAATTAACGATAAATAAGAGAACTTACGATAAGAGAATCCTTTTGGACAATATTGTGTTCGCTATAATGACAAATAGGACTGTTCGAAAAAAAACATATGAATGAAAATCGTCCTTGTTAGAATGACTGAATACAAAATTTGTTGATAACAGAGAGACACAAGTAGGACATGAGACACAGACTACAGTGGAGAACTTTTTTGATGTGTTGGCCCACAGAAGTCACACGATTTGGAATTCAGAATTTGTTTTAACTTTTTATGAGGAAACATGAAATCAATTAACACATTCAAAATATTAATTTTCCGATTGGGATTAGGATTTTTGAAACAAAGATACAAATTCAATTTGAGCAGAAATACAATCAACGGCTTTAGAAAAGAGGATTCGTTGCAAACTTATCGCATCGRTATGCATGTCTGGCAAAGTTCCATAGCTGAAATAAAAAATTGTTATGCTTATCTTACTGAAATAAAACTCACAATGCTCACGAATTCCGCATCACTTTGCCCACAAACTTCTCTCACTGAATCTACTGCGTGTTGAATATAGAGACCAGAGTTTATGATCAAGCATTGGTGTTGTCGATCGACCTGAAAATAATGTTGAAAATTTGGTAATCGGAGAAAGTAACTGACATTTAATTCTAAAAATTCGAAAGCTCTGGTGATGGTGTCTTCAGCAAATGAGCCGGAATCAAGCAAACGTTTCTGACAAACGGAGGTTAACACTTTGAGAGGGGTTGAAGTGGAAGGTGGGGTAGTTGGAGTTGTCCAAAATGTTGGCTCAGTTACTGGTGGCTCAGTTTCAGTTGTTGTTGGAAGAAAGGTTGCATCTGTCTCAAGAGTTGGAAAGTCGGTAGTGAATTCTGGCCCAGAGGTGGATGGTTCAAATGTATTGAGTTCAGTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAATATTAATTTTCCGATTG</pcr_primer_p1>
		<pcr_primer_p2>GCAGTAGATTCAGTGAGAGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAAAATATTAATTTTCCGATTGGGATTAGGATTTTTGAAACAAAGATACAAATTCAATTTGAGCAGAAATACAATCAACGGCTTTAGAAAAGAGGATTCGTTGCAAACTTATCGCATCGGTATGCATGTCTGGCAAAGTTCCATAGCTGAAATAAAAAATTGTTATGCTTATCTTACTGAAATAAAACTCACAATGCTCACGAATTCCGCATCACTTTGCCCACAAACTTCTCTCACTGAATCTACTGC</canonical_amplicon>
		<polymorphic_amplicon>TCAAAATATTAATTTTCCGATTGGGATTAGGATTTTTGAAACAAAGATACAAATTCAATTTGAGCAGAAATACAATCAACGGCTTTAGAAAAGAGGATTCGTTGCAAACTTATCGCATCGRTATGCATGTCTGGCAAAGTTCCATAGCTGAAATAAAAAATTGTTATGCTTATCTTACTGAAATAAAACTCACAATGCTCACGAATTCCGCATCACTTTGCCCACAAACTTCTCTCACTGAATCTACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28029</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>467678</contig_pos>
        <strand></strand>
        <context>TTTTCTATGA[C/T]Gaaaatttaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCGACACAGGTCTGCGGACTACAATAGCAAAAGTTCTAAATTTTCTATGA</left_flank>
        <right_flank>GAAAATTTAATAATTTAAATTCAATTTTAAATTTCTTAAGTTCAAAAACT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAATTTTTTTTTCATCTGGAGTCATCGCCACGTCTGTGAAGATTCAGAAGACACAAATATTGATTGAGTTCCAAAAAACTTATACAACGTTTTTTTGAAAAACCAGGTACATTTAACAAAAAAGTTTTCAATGATTGGACAAGTTTGAGCAAAGTTATGAACAAAAGTATAGAGGGACACTCACTAACGTTCGCCACTGTAGTTCATCGCTTCGCTCCTCACTCTGTGGAAAAGGAAACATATCAAAAGACTCCGTTTTTTTTATTCACCATTAGTGCGGCAATTTTTCCGTTGAAAATTAAAATGGGCGGGATCTACAAATTGTCGTTTACAACCATTTTTACCCACTTTTGTACATTTTGAATTGAAACAACTTTTAGAGATCAGTTCAAGAATTTCGAGGGGTTTTTTTTCGCTTCAAAATGGCACCATCTATCATTCAAAAAAGCGACACAGGTCTGCGGACTACAATAGCAAAAGTTCTAAATTTTCTATGACGAAAATTTAATAATTTAAATTCAATTTTAAATTTCTTAAGTTCAAAAACTCACCAAAAAAATAACAGACTCTCCATCCGCTGATGCTGTTATCCCACGGATAGCCTGATGATAAGGAAACTCAGCCAACCTGCCAACAAGCTTTCCAACGCCATCAAAAACCGAATATTCGAATCCCAGTCTCCCTCTATAAACCATTTCCTGATCATGAACCCATAGTGCTCCTTTTGTTCCAAAGTTAACTTTGTTTTTCAAATGATCTTTGTTAATGGGAACCCCACAAATGAACCATTCGATGTCTATTCGATTTCCATGAAAATATGCGCACAGCATATCTTCATAGACTTCAATTTGTGAGTAGTGTCCAAAAAGGTCCTTGATAGTTACAGTTATTGATTTGCTTGGGTGCCAAGGGTCCTGAACATAGATGACTTTTAAAAGGCGAGTACAGTATTATACCCTAACCTCTCTCAAATATTTATGTCCATCCAATGTAAAAAT</canonical>
            <polymorphic>GGAAATTTTTTTTTCATCTGGAGTCATCGCCACGTCTGTGAAGATTCAGAAGACACAAATATTGATTGAGTTCCAAAAAACTTATACAACGTTTTTTTGAAAAACCAGGTACATTTAACAAAAAAGTTTTCAATGATTGGACAAGTTTGAGCAAAGTTATGAACAAAAGTATAGAGGGACACTCACTAACGTTCGCCACTGTAGTTCATCGCTTCGCTCCTCACTCTGTGGAAAAGGAAACATATCAAAAGACTCCGTTTTTTTTATTCACCATTAGTGCGGCAATTTTTCCGTTGAAAATTAAAATGGGCGGGATCTACAAATTGTCGTTTACAACCATTTTTACCCACTTTTGTACATTTTGAATTGAAACAACTTTTAGAGATCAGTTCAAGAATTTCGAGGGGTTTTTTTTCGCTTCAAAATGGCACCATCTATCATTCAAAAAAGCGACACAGGTCTGCGGACTACAATAGCAAAAGTTCTAAATTTTCTATGAYGAAAATTTAATAATTTAAATTCAATTTTAAATTTCTTAAGTTCAAAAACTCACCAAAAAAATAACAGACTCTCCATCCGCTGATGCTGTTATCCCACGGATAGCCTGATGATAAGGAAACTCAGCCAACCTGCCAACAAGCTTTCCAACGCCATCAAAAACCGAATATTCGAATCCCAGTCTCCCTCTATAAACCATTTCCTGATCATGAACCCATAGTGCTCCTTTTGTTCCAAAGTTAACTTTGTTTTTCAAATGATCTTTGTTAATGGGAACCCCACAAATGAACCATTCGATGTCTATTCGATTTCCATGAAAATATGCGCACAGCATATCTTCATAGACTTCAATTTGTGAGTAGTGTCCAAAAAGGTCCTTGATAGTTACAGTTATTGATTTGCTTGGGTGCCAAGGGTCCTGAACATAGATGACTTTTAAAAGGCGAGTACAGTATTATACCCTAACCTCTCTCAAATATTTATGTCCATCCAATGTAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATCTACAAATTGTCGTTTACA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGGTGAGTTTTTGAACTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGATCTACAAATTGTCGTTTACAACCATTTTTACCCACTTTTGTACATTTTGAATTGAAACAACTTTTAGAGATCAGTTCAAGAATTTCGAGGGGTTTTTTTTCGCTTCAAAATGGCACCATCTATCATTCAAAAAAGCGACACAGGTCTGCGGACTACAATAGCAAAAGTTCTAAATTTTCTATGACGAAAATTTAATAATTTAAATTCAATTTTAAATTTCTTAAGTTCAAAAACTCACCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGATCTACAAATTGTCGTTTACAACCATTTTTACCCACTTTTGTACATTTTGAATTGAAACAACTTTTAGAGATCAGTTCAAGAATTTCGAGGGGTTTTTTTTCGCTTCAAAATGGCACCATCTATCATTCAAAAAAGCGACACAGGTCTGCGGACTACAATAGCAAAAGTTCTAAATTTTCTATGAYGAAAATTTAATAATTTAAATTCAATTTTAAATTTCTTAAGTTCAAAAACTCACCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28030</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>470196</contig_pos>
        <strand></strand>
        <context>cacgtttaaa[A/T]aacctttgat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCGTGACCTAAAAAATGGAATCTAGGTCAGATTTCTCATCACGTTTAAA</left_flank>
        <right_flank>AACCTTTGATTTTTCAAAAATTTTTAATCCTCCCAACTCCTTAAAAGATC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAAATTGATAGGATCAGAAAACCCAAAAAATCAAGATTACCAAAAATGCAAAACCGTTGAAATTTTATTGTAGTATGGATCAAGGAAAAAACTGGAAAATTACACGGGGACATATAAAGTTTGGAACATTGGTTGGACCAATAACATCACGGTAGGCTAGAAGGGATCCATGTTCCCAGGTAATCTGAAAAAAATTGTTTTGGAAATTTTGAAGACAAAAGCCACGATCTAAAAAATTGGAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAATTGAAATCTAGGCCATGACCTAAAAAATTGAAATCTAGGCCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAATTGAAATCTAGATCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAAATCTAGGTCGTGACCTAAAAAATGGAATCTAGGTCAGATTTCTCATCACGTTTAAAAAACCTTTGATTTTTCAAAAATTTTTAATCCTCCCAACTCCTTAAAAGATCGTCTTTTTGGCCCTCATTTTATTTTTTTTTTGTTTGAGATATCAAAAATCTTTCAACTAATGCTGATTAATTCCTTACTGATTAATTGATTAATTCCTTATATTTAGTTTTTCTAAATTCTTAAATTTTCAAATTTCCGAGTTCAACGTTCTAACATTCCTCATTTTACTGAGTTTCTAGAGTTTTGAATTTTCGAAAATTGTAAAATTTTAAATTCAGAAATTCATAAGTTTGAAACATCAAAAATTCAAAATCACAGAAATTCAAAAATTCAGAAATATAGAAATTCACATTTTCCACAATTCAGAATCCTTGAATTGCAACAACAACGTCTTTCTATTCTTTTTCCGAACTACAGTAACCTTAAATTACTGTAATACATATTTCATCCATTTTTAATAAAAGGCGCATATCGTAACAACAATAGCCGCAACTGATTATGCGCCTTTA</canonical>
            <polymorphic>GGAAAATTGATAGGATCAGAAAACCCAAAAAATCAAGATTACCAAAAATGCAAAACCGTTGAAATTTTATTGTAGTATGGATCAAGGAAAAAACTGGAAAATTACACGGGGACATATAAAGTTTGGAACATTGGTTGGACCAATAACATCACGGTAGGCTAGAAGGGATCCATGTTCCCAGGTAATCTGAAAAAAATTGTTTTGGAAATTTTGAAGACAAAAGCCACGATCTAAAAAATTGGAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAATTGAAATCTAGGCCATGACCTAAAAAATTGAAATCTAGGCCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAATTGAAATCTAGATCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAAATCTAGGTCGTGACCTAAAAAATGGAATCTAGGTCAGATTTCTCATCACGTTTAAAWAACCTTTGATTTTTCAAAAATTTTTAATCCTCCCAACTCCTTAAAAGATCGTCTTTTTGGCCCTCATTTTATTTTTTTTTTGTTTGAGATATCAAAAATCTTTCAACTAATGCTGATTAATTCCTTACTGATTAATTGATTAATTCCTTATATTTAGTTTTTCTAAATTCTTAAATTTTCAAATTTCCGAGTTCAACGTTCTAACATTCCTCATTTTACTGAGTTTCTAGAGTTTTGAATTTTCGAAAATTGTAAAATTTTAAATTCAGAAATTCATAAGTTTGAAACATCAAAAATTCAAAATCACAGAAATTCAAAAATTCAGAAATATAGAAATTCACATTTTCCACAATTCAGAATCCTTGAATTGCAACAACAACGTCTTTCTATTCTTTTTCCGAACTACAGTAACCTTAAATTACTGTAATACATATTTCATCCATTTTTAATAAAAGGCGCATATCGTAACAACAATAGCCGCAACTGATTATGCGCCTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGGAAATTTTGAAGACAA</pcr_primer_p1>
		<pcr_primer_p2>TCTAGAAACTCAGTAAAATGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>532</pcr_amplicon_size>
		<canonical_amplicon>TTTTGGAAATTTTGAAGACAAAAGCCACGATCTAAAAAATTGGAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAATTGAAATCTAGGCCATGACCTAAAAAATTGAAATCTAGGCCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAATTGAAATCTAGATCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAAATCTAGGTCGTGACCTAAAAAATGGAATCTAGGTCAGATTTCTCATCACGTTTAAAAAACCTTTGATTTTTCAAAAATTTTTAATCCTCCCAACTCCTTAAAAGATCGTCTTTTTGGCCCTCATTTTATTTTTTTTTTGTTTGAGATATCAAAAATCTTTCAACTAATGCTGATTAATTCCTTACTGATTAATTGATTAATTCCTTATATTTAGTTTTTCTAAATTCTTAAATTTTCAAATTTCCGAGTTCAACGTTCTAACATTCCTCATTTTACTGAGTTTCTAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTGGAAATTTTGAAGACAAAAGCCACGATCTAAAAAATTGGAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAATTGAAATCTAGGCCATGACCTAAAAAATTGAAATCTAGGCCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAATTGAAATCTAGATCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAAATCTAGGTCGTGACCTAAAAAATGGAATCTAGGTCAGATTTCTCATCACGTTTAAAWAACCTTTGATTTTTCAAAAATTTTTAATCCTCCCAACTCCTTAAAAGATCGTCTTTTTGGCCCTCATTTTATTTTTTTTTTGTTTGAGATATCAAAAATCTTTCAACTAATGCTGATTAATTCCTTACTGATTAATTGATTAATTCCTTATATTTAGTTTTTCTAAATTCTTAAATTTTCAAATTTCCGAGTTCAACGTTCTAACATTCCTCATTTTACTGAGTTTCTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28031</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>470246</contig_pos>
        <strand></strand>
        <context>cttaaaagat[C/A]gtctttttgg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AAACCTTTGATTTTTCAAAAATTTTTAATCCTCCCAACTCCTTAAAAGAT</left_flank>
        <right_flank>GTCTTTTTGGCCCTCATTTTATTTTTTTTTTGTTTGAGATATCAAAAATC</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAACCGTTGAAATTTTATTGTAGTATGGATCAAGGAAAAAACTGGAAAATTACACGGGGACATATAAAGTTTGGAACATTGGTTGGACCAATAACATCACGGTAGGCTAGAAGGGATCCATGTTCCCAGGTAATCTGAAAAAAATTGTTTTGGAAATTTTGAAGACAAAAGCCACGATCTAAAAAATTGGAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAATTGAAATCTAGGCCATGACCTAAAAAATTGAAATCTAGGCCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAATTGAAATCTAGATCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAAATCTAGGTCGTGACCTAAAAAATGGAATCTAGGTCAGATTTCTCATCACGTTTAAAAAACCTTTGATTTTTCAAAAATTTTTAATCCTCCCAACTCCTTAAAAGATCGTCTTTTTGGCCCTCATTTTATTTTTTTTTTGTTTGAGATATCAAAAATCTTTCAACTAATGCTGATTAATTCCTTACTGATTAATTGATTAATTCCTTATATTTAGTTTTTCTAAATTCTTAAATTTTCAAATTTCCGAGTTCAACGTTCTAACATTCCTCATTTTACTGAGTTTCTAGAGTTTTGAATTTTCGAAAATTGTAAAATTTTAAATTCAGAAATTCATAAGTTTGAAACATCAAAAATTCAAAATCACAGAAATTCAAAAATTCAGAAATATAGAAATTCACATTTTCCACAATTCAGAATCCTTGAATTGCAACAACAACGTCTTTCTATTCTTTTTCCGAACTACAGTAACCTTAAATTACTGTAATACATATTTCATCCATTTTTAATAAAAGGCGCATATCGTAACAACAATAGCCGCAACTGATTATGCGCCTTTAAATCAGCTGTTATCTATCAAAATACACAAAGAAACACTTACTGTTCGGTT</canonical>
            <polymorphic>CAAAACCGTTGAAATTTTATTGTAGTATGGATCAAGGAAAAAACTGGAAAATTACACGGGGACATATAAAGTTTGGAACATTGGTTGGACCAATAACATCACGGTAGGCTAGAAGGGATCCATGTTCCCAGGTAATCTGAAAAAAATTGTTTTGGAAATTTTGAAGACAAAAGCCACGATCTAAAAAATTGGAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAATTGAAATCTAGGCCATGACCTAAAAAATTGAAATCTAGGCCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAATTGAAATCTAGATCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAAATCTAGGTCGTGACCTAAAAAATGGAATCTAGGTCAGATTTCTCATCACGTTTAAAAAACCTTTGATTTTTCAAAAATTTTTAATCCTCCCAACTCCTTAAAAGATMGTCTTTTTGGCCCTCATTTTATTTTTTTTTTGTTTGAGATATCAAAAATCTTTCAACTAATGCTGATTAATTCCTTACTGATTAATTGATTAATTCCTTATATTTAGTTTTTCTAAATTCTTAAATTTTCAAATTTCCGAGTTCAACGTTCTAACATTCCTCATTTTACTGAGTTTCTAGAGTTTTGAATTTTCGAAAATTGTAAAATTTTAAATTCAGAAATTCATAAGTTTGAAACATCAAAAATTCAAAATCACAGAAATTCAAAAATTCAGAAATATAGAAATTCACATTTTCCACAATTCAGAATCCTTGAATTGCAACAACAACGTCTTTCTATTCTTTTTCCGAACTACAGTAACCTTAAATTACTGTAATACATATTTCATCCATTTTTAATAAAAGGCGCATATCGTAACAACAATAGCCGCAACTGATTATGCGCCTTTAAATCAGCTGTTATCTATCAAAATACACAAAGAAACACTTACTGTTCGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>504 177 142 87 61 29</canonical_bands>
                <polymorphic_bands>646 177 87 61 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGGAAATTTTGAAGACAA</pcr_primer_p1>
		<pcr_primer_p2>TCTAGAAACTCAGTAAAATGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>532</pcr_amplicon_size>
		<canonical_amplicon>TTTTGGAAATTTTGAAGACAAAAGCCACGATCTAAAAAATTGGAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAATTGAAATCTAGGCCATGACCTAAAAAATTGAAATCTAGGCCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAATTGAAATCTAGATCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAAATCTAGGTCGTGACCTAAAAAATGGAATCTAGGTCAGATTTCTCATCACGTTTAAAAAACCTTTGATTTTTCAAAAATTTTTAATCCTCCCAACTCCTTAAAAGATCGTCTTTTTGGCCCTCATTTTATTTTTTTTTTGTTTGAGATATCAAAAATCTTTCAACTAATGCTGATTAATTCCTTACTGATTAATTGATTAATTCCTTATATTTAGTTTTTCTAAATTCTTAAATTTTCAAATTTCCGAGTTCAACGTTCTAACATTCCTCATTTTACTGAGTTTCTAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTGGAAATTTTGAAGACAAAAGCCACGATCTAAAAAATTGGAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAATTGAAATCTAGGCCATGACCTAAAAAATTGAAATCTAGGCCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAATTGAAATCTAGATCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAAATCTAGGTCGTGACCTAAAAAATGGAATCTAGGTCAGATTTCTCATCACGTTTAAAAAACCTTTGATTTTTCAAAAATTTTTAATCCTCCCAACTCCTTAAAAGATMGTCTTTTTGGCCCTCATTTTATTTTTTTTTTGTTTGAGATATCAAAAATCTTTCAACTAATGCTGATTAATTCCTTACTGATTAATTGATTAATTCCTTATATTTAGTTTTTCTAAATTCTTAAATTTTCAAATTTCCGAGTTCAACGTTCTAACATTCCTCATTTTACTGAGTTTCTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28032</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>470393</contig_pos>
        <strand>+</strand>
        <context>CCGAGTTCAA[C/T]GTTCTAAYAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTATATTTAGTTTTTCTAAATTCTTAAATTTTCAAATTTCCGAGTTCAA</left_flank>
        <right_flank>GTTCTAACATTCCTCATTTTACTGAGTTTCTAGAGTTTTGAATTTTCGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTTTGGAAATTTTGAAGACAAAAGCCACGATCTAAAAAATTGGAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAATTGAAATCTAGGCCATGACCTAAAAAATTGAAATCTAGGCCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAATTGAAATCTAGATCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAAATCTAGGTCGTGACCTAAAAAATGGAATCTAGGTCAGATTTCTCATCACGTTTAAAAAACCTTTGATTTTTCAAAAATTTTTAATCCTCCCAACTCCTTAAAAGATCGTCTTTTTGGCCCTCATTTTATTTTTTTTTTGTTTGAGATATCAAAAATCTTTCAACTAATGCTGATTAATTCCTTACTGATTAATTGATTAATTCCTTATATTTAGTTTTTCTAAATTCTTAAATTTTCAAATTTCCGAGTTCAACGTTCTAACATTCCTCATTTTACTGAGTTTCTAGAGTTTTGAATTTTCGAAAATTGTAAAATTTTAAATTCAGAAATTCATAAGTTTGAAACATCAAAAATTCAAAATCACAGAAATTCAAAAATTCAGAAATATAGAAATTCACATTTTCCACAATTCAGAATCCTTGAATTGCAACAACAACGTCTTTCTATTCTTTTTCCGAACTACAGTAACCTTAAATTACTGTAATACATATTTCATCCATTTTTAATAAAAGGCGCATATCGTAACAACAATAGCCGCAACTGATTATGCGCCTTTAAATCAGCTGTTATCTATCAAAATACACAAAGAAACACTTACTGTTCGGTTAGGCCATAATAATCGATACTGTCCATGGCCGCCATTTACCCAAGTCCTGCAAAAAGAAGAAAAGGGGAAAAGATAAGAAAAAGAAAAGGGCCAAAATCGATAATTTTTTCCGTCGTTGAAGATGCTCATGTTTTTAATCAAATTCTG</canonical>
            <polymorphic>TGTTTTGGAAATTTTGAAGACAAAAGCCACGATCTAAAAAATTGGAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAATTGAAATCTAGGCCATGACCTAAAAAATTGAAATCTAGGCCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAATTGAAATCTAGATCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAAATCTAGGTCGTGACCTAAAAAATGGAATCTAGGTCAGATTTCTCATCACGTTTAAAAAACCTTTGATTTTTCAAAAATTTTTAATCCTCCCAACTCCTTAAAAGATCGTCTTTTTGGCCCTCATTTTATTTTTTTTTTGTTTGAGATATCAAAAATCTTTCAACTAATGCTGATTAATTCCTTACTGATTAATTGATTAATTCCTTATATTTAGTTTTTCTAAATTCTTAAATTTTCAAATTTCCGAGTTCAAYGTTCTAACATTCCTCATTTTACTGAGTTTCTAGAGTTTTGAATTTTCGAAAATTGTAAAATTTTAAATTCAGAAATTCATAAGTTTGAAACATCAAAAATTCAAAATCACAGAAATTCAAAAATTCAGAAATATAGAAATTCACATTTTCCACAATTCAGAATCCTTGAATTGCAACAACAACGTCTTTCTATTCTTTTTCCGAACTACAGTAACCTTAAATTACTGTAATACATATTTCATCCATTTTTAATAAAAGGCGCATATCGTAACAACAATAGCCGCAACTGATTATGCGCCTTTAAATCAGCTGTTATCTATCAAAATACACAAAGAAACACTTACTGTTCGGTTAGGCCATAATAATCGATACTGTCCATGGCCGCCATTTACCCAAGTCCTGCAAAAAGAAGAAAAGGGGAAAAGATAAGAAAAAGAAAAGGGCCAAAATCGATAATTTTTTCCGTCGTTGAAGATGCTCATGTTTTTAATCAAATTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>318 294 205 183</canonical_bands>
                <polymorphic_bands>388 318 294</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGGAAATTTTGAAGACAA</pcr_primer_p1>
		<pcr_primer_p2>TGATTTTGAATTTTTGATGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>607</pcr_amplicon_size>
		<canonical_amplicon>TTTTGGAAATTTTGAAGACAAAAGCCACGATCTAAAAAATTGGAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAATTGAAATCTAGGCCATGACCTAAAAAATTGAAATCTAGGCCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAATTGAAATCTAGATCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAAATCTAGGTCGTGACCTAAAAAATGGAATCTAGGTCAGATTTCTCATCACGTTTAAAAAACCTTTGATTTTTCAAAAATTTTTAATCCTCCCAACTCCTTAAAAGATCGTCTTTTTGGCCCTCATTTTATTTTTTTTTTGTTTGAGATATCAAAAATCTTTCAACTAATGCTGATTAATTCCTTACTGATTAATTGATTAATTCCTTATATTTAGTTTTTCTAAATTCTTAAATTTTCAAATTTCCGAGTTCAACGTTCTAACATTCCTCATTTTACTGAGTTTCTAGAGTTTTGAATTTTCGAAAATTGTAAAATTTTAAATTCAGAAATTCATAAGTTTGAAACATCAAAAATTCAAAATCA</canonical_amplicon>
		<polymorphic_amplicon>TTTTGGAAATTTTGAAGACAAAAGCCACGATCTAAAAAATTGGAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAATTGAAATCTAGGCCATGACCTAAAAAATTGAAATCTAGGCCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAATTGAAATCTAGATCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAAATCTAGGTCGTGACCTAAAAAATGGAATCTAGGTCAGATTTCTCATCACGTTTAAAAAACCTTTGATTTTTCAAAAATTTTTAATCCTCCCAACTCCTTAAAAGATCGTCTTTTTGGCCCTCATTTTATTTTTTTTTTGTTTGAGATATCAAAAATCTTTCAACTAATGCTGATTAATTCCTTACTGATTAATTGATTAATTCCTTATATTTAGTTTTTCTAAATTCTTAAATTTTCAAATTTCCGAGTTCAAYGTTCTAACATTCCTCATTTTACTGAGTTTCTAGAGTTTTGAATTTTCGAAAATTGTAAAATTTTAAATTCAGAAATTCATAAGTTTGAAACATCAAAAATTCAAAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28033</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>470401</contig_pos>
        <strand>+</strand>
        <context>AAYGTTCTAA[C/T]ATTCCTCATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGTTTTTCTAAATTCTTAAATTTTCAAATTTCCGAGTTCAACGTTCTAA</left_flank>
        <right_flank>ATTCCTCATTTTACTGAGTTTCTAGAGTTTTGAATTTTCGAAAATTGTAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTTGAAGACAAAAGCCACGATCTAAAAAATTGGAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAATTGAAATCTAGGCCATGACCTAAAAAATTGAAATCTAGGCCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAATTGAAATCTAGATCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAAATCTAGGTCGTGACCTAAAAAATGGAATCTAGGTCAGATTTCTCATCACGTTTAAAAAACCTTTGATTTTTCAAAAATTTTTAATCCTCCCAACTCCTTAAAAGATCGTCTTTTTGGCCCTCATTTTATTTTTTTTTTGTTTGAGATATCAAAAATCTTTCAACTAATGCTGATTAATTCCTTACTGATTAATTGATTAATTCCTTATATTTAGTTTTTCTAAATTCTTAAATTTTCAAATTTCCGAGTTCAACGTTCTAACATTCCTCATTTTACTGAGTTTCTAGAGTTTTGAATTTTCGAAAATTGTAAAATTTTAAATTCAGAAATTCATAAGTTTGAAACATCAAAAATTCAAAATCACAGAAATTCAAAAATTCAGAAATATAGAAATTCACATTTTCCACAATTCAGAATCCTTGAATTGCAACAACAACGTCTTTCTATTCTTTTTCCGAACTACAGTAACCTTAAATTACTGTAATACATATTTCATCCATTTTTAATAAAAGGCGCATATCGTAACAACAATAGCCGCAACTGATTATGCGCCTTTAAATCAGCTGTTATCTATCAAAATACACAAAGAAACACTTACTGTTCGGTTAGGCCATAATAATCGATACTGTCCATGGCCGCCATTTACCCAAGTCCTGCAAAAAGAAGAAAAGGGGAAAAGATAAGAAAAAGAAAAGGGCCAAAATCGATAATTTTTTCCGTCGTTGAAGATGCTCATGTTTTTAATCAAATTCTGACTTTTTT</canonical>
            <polymorphic>AAATTTTGAAGACAAAAGCCACGATCTAAAAAATTGGAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAAATTAAAATCTAGGTCATGACCTAAAAATTGAAATCTAGGCCATGACCTAAAAAATTGAAATCTAGGCCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAATTGAAATCTAGATCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAAATCTAGGTCGTGACCTAAAAAATGGAATCTAGGTCAGATTTCTCATCACGTTTAAAAAACCTTTGATTTTTCAAAAATTTTTAATCCTCCCAACTCCTTAAAAGATCGTCTTTTTGGCCCTCATTTTATTTTTTTTTTGTTTGAGATATCAAAAATCTTTCAACTAATGCTGATTAATTCCTTACTGATTAATTGATTAATTCCTTATATTTAGTTTTTCTAAATTCTTAAATTTTCAAATTTCCGAGTTCAACGTTCTAAYATTCCTCATTTTACTGAGTTTCTAGAGTTTTGAATTTTCGAAAATTGTAAAATTTTAAATTCAGAAATTCATAAGTTTGAAACATCAAAAATTCAAAATCACAGAAATTCAAAAATTCAGAAATATAGAAATTCACATTTTCCACAATTCAGAATCCTTGAATTGCAACAACAACGTCTTTCTATTCTTTTTCCGAACTACAGTAACCTTAAATTACTGTAATACATATTTCATCCATTTTTAATAAAAGGCGCATATCGTAACAACAATAGCCGCAACTGATTATGCGCCTTTAAATCAGCTGTTATCTATCAAAATACACAAAGAAACACTTACTGTTCGGTTAGGCCATAATAATCGATACTGTCCATGGCCGCCATTTACCCAAGTCCTGCAAAAAGAAGAAAAGGGGAAAAGATAAGAAAAAGAAAAGGGCCAAAATCGATAATTTTTTCCGTCGTTGAAGATGCTCATGTTTTTAATCAAATTCTGACTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGGAAATTTTGAAGACAA</pcr_primer_p1>
		<pcr_primer_p2>TGATTTTGAATTTTTGATGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>607</pcr_amplicon_size>
		<canonical_amplicon>ACATTCCTCATTTTACTGAGTTTCTAGAGTTTTGAATTTTCGAAAATTGTAAAATTTTAAATTCAGAAATTCATAAGTTTGAAACATCAAAAATTCAAAATCA</canonical_amplicon>
		<polymorphic_amplicon>AYATTCCTCATTTTACTGAGTTTCTAGAGTTTTGAATTTTCGAAAATTGTAAAATTTTAAATTCAGAAATTCATAAGTTTGAAACATCAAAAATTCAAAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28034</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>470575</contig_pos>
        <strand>+</strand>
        <context>TGCAACAACA[A/G]CGTCTTTCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATAGAAATTCACATTTTCCACAATTCAGAATCCTTGAATTGCAACAACA</left_flank>
        <right_flank>CGTCTTTCTATTCTTTTTCCGAACTACAGTAACCTTAAATTACTGTAATA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATGACCTAAAAAATTGAAATCTAGATCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAAATCTAGGTCGTGACCTAAAAAATGGAATCTAGGTCAGATTTCTCATCACGTTTAAAAAACCTTTGATTTTTCAAAAATTTTTAATCCTCCCAACTCCTTAAAAGATCGTCTTTTTGGCCCTCATTTTATTTTTTTTTTGTTTGAGATATCAAAAATCTTTCAACTAATGCTGATTAATTCCTTACTGATTAATTGATTAATTCCTTATATTTAGTTTTTCTAAATTCTTAAATTTTCAAATTTCCGAGTTCAACGTTCTAACATTCCTCATTTTACTGAGTTTCTAGAGTTTTGAATTTTCGAAAATTGTAAAATTTTAAATTCAGAAATTCATAAGTTTGAAACATCAAAAATTCAAAATCACAGAAATTCAAAAATTCAGAAATATAGAAATTCACATTTTCCACAATTCAGAATCCTTGAATTGCAACAACAACGTCTTTCTATTCTTTTTCCGAACTACAGTAACCTTAAATTACTGTAATACATATTTCATCCATTTTTAATAAAAGGCGCATATCGTAACAACAATAGCCGCAACTGATTATGCGCCTTTAAATCAGCTGTTATCTATCAAAATACACAAAGAAACACTTACTGTTCGGTTAGGCCATAATAATCGATACTGTCCATGGCCGCCATTTACCCAAGTCCTGCAAAAAGAAGAAAAGGGGAAAAGATAAGAAAAAGAAAAGGGCCAAAATCGATAATTTTTTCCGTCGTTGAAGATGCTCATGTTTTTAATCAAATTCTGACTTTTTTTTGTAATCAAAAAAGGTAATTGGTGAGTGAAAACCATCTGACCGCGGCCGGCCGCATCGATTATGCAGTGTTGGGGTCAGAAAGTGTAAGCGAGCGGCTGCTCGCACTGACTTGCCGAAGGAGACGAGGAGGAAAAATATAACGCTTCTTTCGCTCCCTTTCTCTCTCTCTCCG</canonical>
            <polymorphic>TCATGACCTAAAAAATTGAAATCTAGATCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAAATCTAGGTCGTGACCTAAAAAATGGAATCTAGGTCAGATTTCTCATCACGTTTAAAAAACCTTTGATTTTTCAAAAATTTTTAATCCTCCCAACTCCTTAAAAGATCGTCTTTTTGGCCCTCATTTTATTTTTTTTTTGTTTGAGATATCAAAAATCTTTCAACTAATGCTGATTAATTCCTTACTGATTAATTGATTAATTCCTTATATTTAGTTTTTCTAAATTCTTAAATTTTCAAATTTCCGAGTTCAACGTTCTAACATTCCTCATTTTACTGAGTTTCTAGAGTTTTGAATTTTCGAAAATTGTAAAATTTTAAATTCAGAAATTCATAAGTTTGAAACATCAAAAATTCAAAATCACAGAAATTCAAAAATTCAGAAATATAGAAATTCACATTTTCCACAATTCAGAATCCTTGAATTGCAACAACARCGTCTTTCTATTCTTTTTCCGAACTACAGTAACCTTAAATTACTGTAATACATATTTCATCCATTTTTAATAAAAGGCGCATATCGTAACAACAATAGCCGCAACTGATTATGCGCCTTTAAATCAGCTGTTATCTATCAAAATACACAAAGAAACACTTACTGTTCGGTTAGGCCATAATAATCGATACTGTCCATGGCCGCCATTTACCCAAGTCCTGCAAAAAGAAGAAAAGGGGAAAAGATAAGAAAAAGAAAAGGGCCAAAATCGATAATTTTTTCCGTCGTTGAAGATGCTCATGTTTTTAATCAAATTCTGACTTTTTTTTGTAATCAAAAAAGGTAATTGGTGAGTGAAAACCATCTGACCGCGGCCGGCCGCATCGATTATGCAGTGTTGGGGTCAGAAAGTGTAAGCGAGCGGCTGCTCGCACTGACTTGCCGAAGGAGACGAGGAGGAAAAATATAACGCTTCTTTCGCTCCCTTTCTCTCTCTCTCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>500 205 183 112</canonical_bands>
                <polymorphic_bands>683 205 112</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCACAGAAATTCAAAAATTCA</pcr_primer_p1>
		<pcr_primer_p2>TAACCGAACAGTAAGTGTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCACAGAAATTCAAAAATTCAGAAATATAGAAATTCACATTTTCCACAATTCAGAATCCTTGAATTGCAACAACAACGTCTTTCTATTCTTTTTCCGAACTACAGTAACCTTAAATTACTGTAATACATATTTCATCCATTTTTAATAAAAGGCGCATATCGTAACAACAATAGCCGCAACTGATTATGCGCCTTTAAATCAGCTGTTATCTATCAAAATACACAAAGAAACACTTACTGTTCGGTTA</canonical_amplicon>
		<polymorphic_amplicon>AATCACAGAAATTCAAAAATTCAGAAATATAGAAATTCACATTTTCCACAATTCAGAATCCTTGAATTGCAACAACARCGTCTTTCTATTCTTTTTCCGAACTACAGTAACCTTAAATTACTGTAATACATATTTCATCCATTTTTAATAAAAGGCGCATATCGTAACAACAATAGCCGCAACTGATTATGCGCCTTTAAATCAGCTGTTATCTATCAAAATACACAAAGAAACACTTACTGTTCGGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28035</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>470712</contig_pos>
        <strand>+</strand>
        <context>GCTGTTATCW[A/T]TCAAAATACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAACAACAATAGCCGCAACTGATTATGCGCCTTTAAATCAGCTGTTATCT</left_flank>
        <right_flank>TCAAAATACACAAAGAAACACTTACTGTTCGGTTAGGCCATAATAATCGA</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTTTTAATCCTCCCAACTCCTTAAAAGATCGTCTTTTTGGCCCTCATTTTATTTTTTTTTTGTTTGAGATATCAAAAATCTTTCAACTAATGCTGATTAATTCCTTACTGATTAATTGATTAATTCCTTATATTTAGTTTTTCTAAATTCTTAAATTTTCAAATTTCCGAGTTCAACGTTCTAACATTCCTCATTTTACTGAGTTTCTAGAGTTTTGAATTTTCGAAAATTGTAAAATTTTAAATTCAGAAATTCATAAGTTTGAAACATCAAAAATTCAAAATCACAGAAATTCAAAAATTCAGAAATATAGAAATTCACATTTTCCACAATTCAGAATCCTTGAATTGCAACAACAACGTCTTTCTATTCTTTTTCCGAACTACAGTAACCTTAAATTACTGTAATACATATTTCATCCATTTTTAATAAAAGGCGCATATCGTAACAACAATAGCCGCAACTGATTATGCGCCTTTAAATCAGCTGTTATCTATCAAAATACACAAAGAAACACTTACTGTTCGGTTAGGCCATAATAATCGATACTGTCCATGGCCGCCATTTACCCAAGTCCTGCAAAAAGAAGAAAAGGGGAAAAGATAAGAAAAAGAAAAGGGCCAAAATCGATAATTTTTTCCGTCGTTGAAGATGCTCATGTTTTTAATCAAATTCTGACTTTTTTTTGTAATCAAAAAAGGTAATTGGTGAGTGAAAACCATCTGACCGCGGCCGGCCGCATCGATTATGCAGTGTTGGGGTCAGAAAGTGTAAGCGAGCGGCTGCTCGCACTGACTTGCCGAAGGAGACGAGGAGGAAAAATATAACGCTTCTTTCGCTCCCTTTCTCTCTCTCTCCGCATGCCTATGGCGAAATAATAGACGCCAGAGTTTCTCTTCTTTTTTGTCTTTTTGAAAAATTGCGGTTTGATGAGGGGTGTCGGATCCTAGGCCACTCGGCCGTGTACTCCTCGTGGAGCTAGTCTCATGCTTTTTA</canonical>
            <polymorphic>AAAATTTTTAATCCTCCCAACTCCTTAAAAGATCGTCTTTTTGGCCCTCATTTTATTTTTTTTTTGTTTGAGATATCAAAAATCTTTCAACTAATGCTGATTAATTCCTTACTGATTAATTGATTAATTCCTTATATTTAGTTTTTCTAAATTCTTAAATTTTCAAATTTCCGAGTTCAACGTTCTAACATTCCTCATTTTACTGAGTTTCTAGAGTTTTGAATTTTCGAAAATTGTAAAATTTTAAATTCAGAAATTCATAAGTTTGAAACATCAAAAATTCAAAATCACAGAAATTCAAAAATTCAGAAATATAGAAATTCACATTTTCCACAATTCAGAATCCTTGAATTGCAACAACAACGTCTTTCTATTCTTTTTCCGAACTACAGTAACCTTAAATTACTGTAATACATATTTCATCCATTTTTAATAAAAGGCGCATATCGTAACAACAATAGCCGCAACTGATTATGCGCCTTTAAATCAGCTGTTATCTWTCAAAATACACAAAGAAACACTTACTGTTCGGTTAGGCCATAATAATCGATACTGTCCATGGCCGCCATTTACCCAAGTCCTGCAAAAAGAAGAAAAGGGGAAAAGATAAGAAAAAGAAAAGGGCCAAAATCGATAATTTTTTCCGTCGTTGAAGATGCTCATGTTTTTAATCAAATTCTGACTTTTTTTTGTAATCAAAAAAGGTAATTGGTGAGTGAAAACCATCTGACCGCGGCCGGCCGCATCGATTATGCAGTGTTGGGGTCAGAAAGTGTAAGCGAGCGGCTGCTCGCACTGACTTGCCGAAGGAGACGAGGAGGAAAAATATAACGCTTCTTTCGCTCCCTTTCTCTCTCTCTCCGCATGCCTATGGCGAAATAATAGACGCCAGAGTTTCTCTTCTTTTTTGTCTTTTTGAAAAATTGCGGTTTGATGAGGGGTGTCGGATCCTAGGCCACTCGGCCGTGTACTCCTCGTGGAGCTAGTCTCATGCTTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTTCCGAACTACAGTAACCT</pcr_primer_p1>
		<pcr_primer_p2>CCCTTTTCTTTTTCTTATCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTTTTCCGAACTACAGTAACCTTAAATTACTGTAATACATATTTCATCCATTTTTAATAAAAGGCGCATATCGTAACAACAATAGCCGCAACTGATTATGCGCCTTTAAATCAGCTGTTATCTATCAAAATACACAAAGAAACACTTACTGTTCGGTTAGGCCATAATAATCGATACTGTCCATGGCCGCCATTTACCCAAGTCCTGCAAAAAGAAGAAAAGGGGAAAAGATAAGAAAAAGAAAAGGG</canonical_amplicon>
		<polymorphic_amplicon>CTTTTTCCGAACTACAGTAACCTTAAATTACTGTAATACATATTTCATCCATTTTTAATAAAAGGCGCATATCGTAACAACAATAGCCGCAACTGATTATGCGCCTTTAAATCAGCTGTTATCTWTCAAAATACACAAAGAAACACTTACTGTTCGGTTAGGCCATAATAATCGATACTGTCCATGGCCGCCATTTACCCAAGTCCTGCAAAAAGAAGAAAAGGGGAAAAGATAAGAAAAAGAAAAGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28040</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>543296</contig_pos>
        <strand></strand>
        <context>ggaaatatca[G/A]raatctgtca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCA</left_flank>
        <right_flank>AAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATC</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTGGAAATTTGGGAATTTCAAATTTTGAAATTCCCTAGCTCGATTTTTTCTGAAAAAACTCGAAGTTGTGGAATTTCGTTCTCGAGTTTTGGATTTTTGAATATTTCGAAATTTGTATTTTGGAATTTCAGGATTTTGGTTCTTGCGAACCGAGATTTCAAGGTTCCGAAATTTTGAAATTTCGGAATTTGAGATTTTCGAAAGTTTGAAATTTTTATGATTTTGGAATTTCGAATCTCATTTTGGAAAAATGGCGGAATTTCAGAATCATGATCTCAAACTTTTTGAATTTGAAAATCTCTGAATCTAAAAATTCTAAATTATCCAGAATTTTGGACTTTCACAATTCAATCTCTAAATGTCAAAACCCTAAAACTTCAGAATCCGTTACTATAAGATTTCCAGCTGTTCAGAACCTAACGTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGA</canonical>
            <polymorphic>AAATTGGAAATTTGGGAATTTCAAATTTTGAAATTCCCTAGCTCGATTTTTTCTGAAAAAACTCGAAGTTGTGGAATTTCGTTCTCGAGTTTTGGATTTTTGAATATTTCGAAATTTGTATTTTGGAATTTCAGGATTTTGGTTCTTGCGAACCGAGATTTCAAGGTTCCGAAATTTTGAAATTTCGGAATTTGAGATTTTCGAAAGTTTGAAATTTTTATGATTTTGGAATTTCGAATCTCATTTTGGAAAAATGGCGGAATTTCAGAATCATGATCTCAAACTTTTTGAATTTGAAAATCTCTGAATCTAAAAATTCTAAATTATCCAGAATTTTGGACTTTCACAATTCAATCTCTAAATGTCAAAACCCTAAAACTTCAGAATCCGTTACTATAAGATTTCCAGCTGTTCAGAACCTAACGTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCARAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>501 116 84 80 78 54 38 32 17</canonical_bands>
                <polymorphic_bands>585 116 80 78 54 38 32 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAACTGATCTAACGGAAATTCA</pcr_primer_p1>
		<pcr_primer_p2>AATTTTTCAGTAACGGTATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATT</canonical_amplicon>
		<polymorphic_amplicon>GTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCARAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28041</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>543297</contig_pos>
        <strand></strand>
        <context>gaaatatcar[A/G]aatctgtcaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAG</left_flank>
        <right_flank>AATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCA</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGGAAATTTGGGAATTTCAAATTTTGAAATTCCCTAGCTCGATTTTTTCTGAAAAAACTCGAAGTTGTGGAATTTCGTTCTCGAGTTTTGGATTTTTGAATATTTCGAAATTTGTATTTTGGAATTTCAGGATTTTGGTTCTTGCGAACCGAGATTTCAAGGTTCCGAAATTTTGAAATTTCGGAATTTGAGATTTTCGAAAGTTTGAAATTTTTATGATTTTGGAATTTCGAATCTCATTTTGGAAAAATGGCGGAATTTCAGAATCATGATCTCAAACTTTTTGAATTTGAAAATCTCTGAATCTAAAAATTCTAAATTATCCAGAATTTTGGACTTTCACAATTCAATCTCTAAATGTCAAAACCCTAAAACTTCAGAATCCGTTACTATAAGATTTCCAGCTGTTCAGAACCTAACGTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAG</canonical>
            <polymorphic>AATTGGAAATTTGGGAATTTCAAATTTTGAAATTCCCTAGCTCGATTTTTTCTGAAAAAACTCGAAGTTGTGGAATTTCGTTCTCGAGTTTTGGATTTTTGAATATTTCGAAATTTGTATTTTGGAATTTCAGGATTTTGGTTCTTGCGAACCGAGATTTCAAGGTTCCGAAATTTTGAAATTTCGGAATTTGAGATTTTCGAAAGTTTGAAATTTTTATGATTTTGGAATTTCGAATCTCATTTTGGAAAAATGGCGGAATTTCAGAATCATGATCTCAAACTTTTTGAATTTGAAAATCTCTGAATCTAAAAATTCTAAATTATCCAGAATTTTGGACTTTCACAATTCAATCTCTAAATGTCAAAACCCTAAAACTTCAGAATCCGTTACTATAAGATTTCCAGCTGTTCAGAACCTAACGTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGRAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>502 116 84 80 78 53 38 32 17</canonical_bands>
                <polymorphic_bands>586 116 80 78 53 38 32 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAACTGATCTAACGGAAATTCA</pcr_primer_p1>
		<pcr_primer_p2>AATTTTTCAGTAACGGTATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATT</canonical_amplicon>
		<polymorphic_amplicon>GTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGRAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28042</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>543308</contig_pos>
        <strand></strand>
        <context>aatctgtcaa[T/C]taataaaata</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAA</left_flank>
        <right_flank>TAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGGAATTTCAAATTTTGAAATTCCCTAGCTCGATTTTTTCTGAAAAAACTCGAAGTTGTGGAATTTCGTTCTCGAGTTTTGGATTTTTGAATATTTCGAAATTTGTATTTTGGAATTTCAGGATTTTGGTTCTTGCGAACCGAGATTTCAAGGTTCCGAAATTTTGAAATTTCGGAATTTGAGATTTTCGAAAGTTTGAAATTTTTATGATTTTGGAATTTCGAATCTCATTTTGGAAAAATGGCGGAATTTCAGAATCATGATCTCAAACTTTTTGAATTTGAAAATCTCTGAATCTAAAAATTCTAAATTATCCAGAATTTTGGACTTTCACAATTCAATCTCTAAATGTCAAAACCCTAAAACTTCAGAATCCGTTACTATAAGATTTCCAGCTGTTCAGAACCTAACGTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCC</canonical>
            <polymorphic>TGGGAATTTCAAATTTTGAAATTCCCTAGCTCGATTTTTTCTGAAAAAACTCGAAGTTGTGGAATTTCGTTCTCGAGTTTTGGATTTTTGAATATTTCGAAATTTGTATTTTGGAATTTCAGGATTTTGGTTCTTGCGAACCGAGATTTCAAGGTTCCGAAATTTTGAAATTTCGGAATTTGAGATTTTCGAAAGTTTGAAATTTTTATGATTTTGGAATTTCGAATCTCATTTTGGAAAAATGGCGGAATTTCAGAATCATGATCTCAAACTTTTTGAATTTGAAAATCTCTGAATCTAAAAATTCTAAATTATCCAGAATTTTGGACTTTCACAATTCAATCTCTAAATGTCAAAACCCTAAAACTTCAGAATCCGTTACTATAAGATTTCCAGCTGTTCAGAACCTAACGTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAAYTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>500 200 155 112 33</canonical_bands>
                <polymorphic_bands>612 200 155 33</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>158 94 89 85 81 80 46 43 39 38 31 30 29 24 24 17 16 14 10 10 8 8 8 7 7 4</canonical_bands>
                <polymorphic_bands>158 119 94 89 85 81 46 43 38 31 30 29 24 24 17 16 14 10 10 8 8 8 7 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAACTGATCTAACGGAAATTCA</pcr_primer_p1>
		<pcr_primer_p2>AATTTTTCAGTAACGGTATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATT</canonical_amplicon>
		<polymorphic_amplicon>GTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAAYTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28043</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>543361</contig_pos>
        <strand></strand>
        <context>gaccactttt[A/T]gatatctttc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTT</left_flank>
        <right_flank>GATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTGTGGAATTTCGTTCTCGAGTTTTGGATTTTTGAATATTTCGAAATTTGTATTTTGGAATTTCAGGATTTTGGTTCTTGCGAACCGAGATTTCAAGGTTCCGAAATTTTGAAATTTCGGAATTTGAGATTTTCGAAAGTTTGAAATTTTTATGATTTTGGAATTTCGAATCTCATTTTGGAAAAATGGCGGAATTTCAGAATCATGATCTCAAACTTTTTGAATTTGAAAATCTCTGAATCTAAAAATTCTAAATTATCCAGAATTTTGGACTTTCACAATTCAATCTCTAAATGTCAAAACCCTAAAACTTCAGAATCCGTTACTATAAGATTTCCAGCTGTTCAGAACCTAACGTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGTGAGAAATGTGCCAA</canonical>
            <polymorphic>AAGTTGTGGAATTTCGTTCTCGAGTTTTGGATTTTTGAATATTTCGAAATTTGTATTTTGGAATTTCAGGATTTTGGTTCTTGCGAACCGAGATTTCAAGGTTCCGAAATTTTGAAATTTCGGAATTTGAGATTTTCGAAAGTTTGAAATTTTTATGATTTTGGAATTTCGAATCTCATTTTGGAAAAATGGCGGAATTTCAGAATCATGATCTCAAACTTTTTGAATTTGAAAATCTCTGAATCTAAAAATTCTAAATTATCCAGAATTTTGGACTTTCACAATTCAATCTCTAAATGTCAAAACCCTAAAACTTCAGAATCCGTTACTATAAGATTTCCAGCTGTTCAGAACCTAACGTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTWGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGTGAGAAATGTGCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAACTGATCTAACGGAAATTCA</pcr_primer_p1>
		<pcr_primer_p2>AATTTTTCAGTAACGGTATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATT</canonical_amplicon>
		<polymorphic_amplicon>GTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTWGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28044</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>543392</contig_pos>
        <strand>+</strand>
        <context>agataattca[A/G]ttcaaagkga</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCA</left_flank>
        <right_flank>TTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGAATATTTCGAAATTTGTATTTTGGAATTTCAGGATTTTGGTTCTTGCGAACCGAGATTTCAAGGTTCCGAAATTTTGAAATTTCGGAATTTGAGATTTTCGAAAGTTTGAAATTTTTATGATTTTGGAATTTCGAATCTCATTTTGGAAAAATGGCGGAATTTCAGAATCATGATCTCAAACTTTTTGAATTTGAAAATCTCTGAATCTAAAAATTCTAAATTATCCAGAATTTTGGACTTTCACAATTCAATCTCTAAATGTCAAAACCCTAAAACTTCAGAATCCGTTACTATAAGATTTCCAGCTGTTCAGAACCTAACGTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGTGAGAAATGTGCCAAGGATAATAAAAATTAGACAAGGATTTTGTGA</canonical>
            <polymorphic>TTTTTGAATATTTCGAAATTTGTATTTTGGAATTTCAGGATTTTGGTTCTTGCGAACCGAGATTTCAAGGTTCCGAAATTTTGAAATTTCGGAATTTGAGATTTTCGAAAGTTTGAAATTTTTATGATTTTGGAATTTCGAATCTCATTTTGGAAAAATGGCGGAATTTCAGAATCATGATCTCAAACTTTTTGAATTTGAAAATCTCTGAATCTAAAAATTCTAAATTATCCAGAATTTTGGACTTTCACAATTCAATCTCTAAATGTCAAAACCCTAAAACTTCAGAATCCGTTACTATAAGATTTCCAGCTGTTCAGAACCTAACGTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCARTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGTGAGAAATGTGCCAAGGATAATAAAAATTAGACAAGGATTTTGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAACTGATCTAACGGAAATTCA</pcr_primer_p1>
		<pcr_primer_p2>AATTTTTCAGTAACGGTATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATT</canonical_amplicon>
		<polymorphic_amplicon>GTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCARTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28045</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>543400</contig_pos>
        <strand>+</strand>
        <context>carttcaaag[G/T]gaacgtATAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAG</left_flank>
        <right_flank>GAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTCGAAATTTGTATTTTGGAATTTCAGGATTTTGGTTCTTGCGAACCGAGATTTCAAGGTTCCGAAATTTTGAAATTTCGGAATTTGAGATTTTCGAAAGTTTGAAATTTTTATGATTTTGGAATTTCGAATCTCATTTTGGAAAAATGGCGGAATTTCAGAATCATGATCTCAAACTTTTTGAATTTGAAAATCTCTGAATCTAAAAATTCTAAATTATCCAGAATTTTGGACTTTCACAATTCAATCTCTAAATGTCAAAACCCTAAAACTTCAGAATCCGTTACTATAAGATTTCCAGCTGTTCAGAACCTAACGTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGTGAGAAATGTGCCAAGGATAATAAAAATTAGACAAGGATTTTGTGAGGAGCAGC</canonical>
            <polymorphic>TATTTCGAAATTTGTATTTTGGAATTTCAGGATTTTGGTTCTTGCGAACCGAGATTTCAAGGTTCCGAAATTTTGAAATTTCGGAATTTGAGATTTTCGAAAGTTTGAAATTTTTATGATTTTGGAATTTCGAATCTCATTTTGGAAAAATGGCGGAATTTCAGAATCATGATCTCAAACTTTTTGAATTTGAAAATCTCTGAATCTAAAAATTCTAAATTATCCAGAATTTTGGACTTTCACAATTCAATCTCTAAATGTCAAAACCCTAAAACTTCAGAATCCGTTACTATAAGATTTCCAGCTGTTCAGAACCTAACGTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGKGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGTGAGAAATGTGCCAAGGATAATAAAAATTAGACAAGGATTTTGTGAGGAGCAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>242 101 81 79 76 62 46 44 40 38 34 31 29 26 15 14 12 10 9 9 2</canonical_bands>
                <polymorphic_bands>242 101 84 81 79 76 62 44 40 34 31 29 26 15 14 12 10 9 9 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 348 102 51</canonical_bands>
                <polymorphic_bands>550 348 102</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAACTGATCTAACGGAAATTCA</pcr_primer_p1>
		<pcr_primer_p2>AATTTTTCAGTAACGGTATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATT</canonical_amplicon>
		<polymorphic_amplicon>GTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGKGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28046</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>543472</contig_pos>
        <strand>+</strand>
        <context>TGAAAAATTA[A/G]YTGAAATTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTA</left_flank>
        <right_flank>CTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAAATTTCGGAATTTGAGATTTTCGAAAGTTTGAAATTTTTATGATTTTGGAATTTCGAATCTCATTTTGGAAAAATGGCGGAATTTCAGAATCATGATCTCAAACTTTTTGAATTTGAAAATCTCTGAATCTAAAAATTCTAAATTATCCAGAATTTTGGACTTTCACAATTCAATCTCTAAATGTCAAAACCCTAAAACTTCAGAATCCGTTACTATAAGATTTCCAGCTGTTCAGAACCTAACGTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGTGAGAAATGTGCCAAGGATAATAAAAATTAGACAAGGATTTTGTGAGGAGCAGCTTGATAGTGACTAACAAAAATGTTTTTAATGATTTGCTTTTTTTGATAATGGCTCATTAGAAATATCAGAAC</canonical>
            <polymorphic>TTGAAATTTCGGAATTTGAGATTTTCGAAAGTTTGAAATTTTTATGATTTTGGAATTTCGAATCTCATTTTGGAAAAATGGCGGAATTTCAGAATCATGATCTCAAACTTTTTGAATTTGAAAATCTCTGAATCTAAAAATTCTAAATTATCCAGAATTTTGGACTTTCACAATTCAATCTCTAAATGTCAAAACCCTAAAACTTCAGAATCCGTTACTATAAGATTTCCAGCTGTTCAGAACCTAACGTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTARCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGTGAGAAATGTGCCAAGGATAATAAAAATTAGACAAGGATTTTGTGAGGAGCAGCTTGATAGTGACTAACAAAAATGTTTTTAATGATTTGCTTTTTTTGATAATGGCTCATTAGAAATATCAGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>427 268 232 73</canonical_bands>
                <polymorphic_bands>695 232 73</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>300 232 209 114 59 53 20 13</canonical_bands>
                <polymorphic_bands>300 232 222 114 59 53 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTTTAAAAGAGCATTTATGG</pcr_primer_p1>
		<pcr_primer_p2>GCAGAAGACGTCACTACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>GGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGC</canonical_amplicon>
		<polymorphic_amplicon>GGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTARCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28047</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>543473</contig_pos>
        <strand>+</strand>
        <context>GAAAAATTAR[C/T]TGAAATTTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAG</left_flank>
        <right_flank>TGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAATTTCGGAATTTGAGATTTTCGAAAGTTTGAAATTTTTATGATTTTGGAATTTCGAATCTCATTTTGGAAAAATGGCGGAATTTCAGAATCATGATCTCAAACTTTTTGAATTTGAAAATCTCTGAATCTAAAAATTCTAAATTATCCAGAATTTTGGACTTTCACAATTCAATCTCTAAATGTCAAAACCCTAAAACTTCAGAATCCGTTACTATAAGATTTCCAGCTGTTCAGAACCTAACGTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGTGAGAAATGTGCCAAGGATAATAAAAATTAGACAAGGATTTTGTGAGGAGCAGCTTGATAGTGACTAACAAAAATGTTTTTAATGATTTGCTTTTTTTGATAATGGCTCATTAGAAATATCAGAACA</canonical>
            <polymorphic>TGAAATTTCGGAATTTGAGATTTTCGAAAGTTTGAAATTTTTATGATTTTGGAATTTCGAATCTCATTTTGGAAAAATGGCGGAATTTCAGAATCATGATCTCAAACTTTTTGAATTTGAAAATCTCTGAATCTAAAAATTCTAAATTATCCAGAATTTTGGACTTTCACAATTCAATCTCTAAATGTCAAAACCCTAAAACTTCAGAATCCGTTACTATAAGATTTCCAGCTGTTCAGAACCTAACGTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGYTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGTGAGAAATGTGCCAAGGATAATAAAAATTAGACAAGGATTTTGTGAGGAGCAGCTTGATAGTGACTAACAAAAATGTTTTTAATGATTTGCTTTTTTTGATAATGGCTCATTAGAAATATCAGAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>427 268 231 74</canonical_bands>
                <polymorphic_bands>695 231 74</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>300 231 209 114 59 53 21 13</canonical_bands>
                <polymorphic_bands>300 231 222 114 59 53 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTTTAAAAGAGCATTTATGG</pcr_primer_p1>
		<pcr_primer_p2>GCAGAAGACGTCACTACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>GGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGC</canonical_amplicon>
		<polymorphic_amplicon>GGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGYTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28048</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>543652</contig_pos>
        <strand>+</strand>
        <context>CTGCAAAAAA[A/T]TTAACCGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAA</left_flank>
        <right_flank>TTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTAAATGTCAAAACCCTAAAACTTCAGAATCCGTTACTATAAGATTTCCAGCTGTTCAGAACCTAACGTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGTGAGAAATGTGCCAAGGATAATAAAAATTAGACAAGGATTTTGTGAGGAGCAGCTTGATAGTGACTAACAAAAATGTTTTTAATGATTTGCTTTTTTTGATAATGGCTCATTAGAAATATCAGAACACAATGGGCTTTAAATAAGAAAAATAATGGGCGGGGGGACAGGAACAATAGGCGAAGGAGGTGAACAGTAAAAAGAAAGAAGAAGAATAAGATGAGTCAAGGTGACGTGGAAATTCTGGCAAGAACAGATCTGTGTGATGAGAAAAAATGTTCGAGATGACCGGGTACAATGGGGTTTCT</canonical>
            <polymorphic>TCTAAATGTCAAAACCCTAAAACTTCAGAATCCGTTACTATAAGATTTCCAGCTGTTCAGAACCTAACGTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAWTTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGTGAGAAATGTGCCAAGGATAATAAAAATTAGACAAGGATTTTGTGAGGAGCAGCTTGATAGTGACTAACAAAAATGTTTTTAATGATTTGCTTTTTTTGATAATGGCTCATTAGAAATATCAGAACACAATGGGCTTTAAATAAGAAAAATAATGGGCGGGGGGACAGGAACAATAGGCGAAGGAGGTGAACAGTAAAAAGAAAGAAGAAGAATAAGATGAGTCAAGGTGACGTGGAAATTCTGGCAAGAACAGATCTGTGTGATGAGAAAAAATGTTCGAGATGACCGGGTACAATGGGGTTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>221 212 89 85 85 81 80 69 39 29 10</canonical_bands>
                <polymorphic_bands>310 212 85 85 81 80 69 39 29 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTCATTTTTGTTTGTTTGTT</pcr_primer_p1>
		<pcr_primer_p2>ACCATTTAACGTCATCTGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGT</canonical_amplicon>
		<polymorphic_amplicon>GCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAWTTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28049</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>543677</contig_pos>
        <strand>+</strand>
        <context>AAGAATCAAA[C/T]GATGGGAGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAA</left_flank>
        <right_flank>GATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAATCCGTTACTATAAGATTTCCAGCTGTTCAGAACCTAACGTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGTGAGAAATGTGCCAAGGATAATAAAAATTAGACAAGGATTTTGTGAGGAGCAGCTTGATAGTGACTAACAAAAATGTTTTTAATGATTTGCTTTTTTTGATAATGGCTCATTAGAAATATCAGAACACAATGGGCTTTAAATAAGAAAAATAATGGGCGGGGGGACAGGAACAATAGGCGAAGGAGGTGAACAGTAAAAAGAAAGAAGAAGAATAAGATGAGTCAAGGTGACGTGGAAATTCTGGCAAGAACAGATCTGTGTGATGAGAAAAAATGTTCGAGATGACCGGGTACAATGGGGTTTCTAAACTATTAACTTTGAGCCCATATC</canonical>
            <polymorphic>CAGAATCCGTTACTATAAGATTTCCAGCTGTTCAGAACCTAACGTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAYGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGTGAGAAATGTGCCAAGGATAATAAAAATTAGACAAGGATTTTGTGAGGAGCAGCTTGATAGTGACTAACAAAAATGTTTTTAATGATTTGCTTTTTTTGATAATGGCTCATTAGAAATATCAGAACACAATGGGCTTTAAATAAGAAAAATAATGGGCGGGGGGACAGGAACAATAGGCGAAGGAGGTGAACAGTAAAAAGAAAGAAGAAGAATAAGATGAGTCAAGGTGACGTGGAAATTCTGGCAAGAACAGATCTGTGTGATGAGAAAAAATGTTCGAGATGACCGGGTACAATGGGGTTTCTAAACTATTAACTTTGAGCCCATATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCATTTTTGTTTGTTTGTT</pcr_primer_p1>
		<pcr_primer_p2>ACCATTTAACGTCATCTGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGT</canonical_amplicon>
		<polymorphic_amplicon>GCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAYGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28050</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>543709</contig_pos>
        <strand>+</strand>
        <context>TTTTTTGTTC[A/T]AGTGGGAGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTC</left_flank>
        <right_flank>AGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAACCTAACGTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGTGAGAAATGTGCCAAGGATAATAAAAATTAGACAAGGATTTTGTGAGGAGCAGCTTGATAGTGACTAACAAAAATGTTTTTAATGATTTGCTTTTTTTGATAATGGCTCATTAGAAATATCAGAACACAATGGGCTTTAAATAAGAAAAATAATGGGCGGGGGGACAGGAACAATAGGCGAAGGAGGTGAACAGTAAAAAGAAAGAAGAAGAATAAGATGAGTCAAGGTGACGTGGAAATTCTGGCAAGAACAGATCTGTGTGATGAGAAAAAATGTTCGAGATGACCGGGTACAATGGGGTTTCTAAACTATTAACTTTGAGCCCATATCTCTCCTTTTCTGTGAAAGATATCAAAAAATTG</canonical>
            <polymorphic>CAGAACCTAACGTAACTGATCTAACGGAAATTCACCGTATACTCTCTCTCTAGGCTAAATTATCTCGGTTCCTATAGGAAATATCAGAAATCTGTCAATTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTAGATATCTTTCCAAGGAACCGAGATAATTCAGTTCAAAGTGAACGTATATGTTGGGATTTTAAAAGAGCATTTATGGTGTGATTTAGAAAAATACCGTTACTGAAAAATTAGCTGAAATTTTAGGCTGTAATATCTACAAGGTTGATAAAAATGGCACCCATTTTTCAGTGATCTGTCAAAAAGCATACATCTCTCACAAAAATTTCAGGTGATTTTTTTGCATGACTTGTTTTTTTGGCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCWAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGTGAGAAATGTGCCAAGGATAATAAAAATTAGACAAGGATTTTGTGAGGAGCAGCTTGATAGTGACTAACAAAAATGTTTTTAATGATTTGCTTTTTTTGATAATGGCTCATTAGAAATATCAGAACACAATGGGCTTTAAATAAGAAAAATAATGGGCGGGGGGACAGGAACAATAGGCGAAGGAGGTGAACAGTAAAAAGAAAGAAGAAGAATAAGATGAGTCAAGGTGACGTGGAAATTCTGGCAAGAACAGATCTGTGTGATGAGAAAAAATGTTCGAGATGACCGGGTACAATGGGGTTTCTAAACTATTAACTTTGAGCCCATATCTCTCCTTTTCTGTGAAAGATATCAAAAAATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCATTTTTGTTTGTTTGTT</pcr_primer_p1>
		<pcr_primer_p2>ACCATTTAACGTCATCTGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCAAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGT</canonical_amplicon>
		<polymorphic_amplicon>GCTCATTTTTGTTTGTTTGTTTTAAAAAAAGTAGTGACGTCTTCTGCAAAAAAATTAACCGAAAACATAAGAATCAAAAGATGGGAGATGAAAGATAAAGTTTTTTGTTCWAGTGGGAGATGAATAGAAAAATACGAAATGTCAAAAATCTGTCACTCATCCCATCACCTCCCTTCACCCCTAAAAAAACTGGAGAGAGACTGGTGCGCCTTTGACGCGTTTTTGGGGTTTCAGATGACGTTAAATGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28051</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>544852</contig_pos>
        <strand>+</strand>
        <context>TTTGAACATA[A/G]YCATACTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATA</left_flank>
        <right_flank>TCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAATTTTACAGGAAATCCAGTTTTTGCCAGAATTTAAATTTCAAGATTTGGAGATTCTGATATTCTAGAATTCTGGAATCCAAAAATCTAGAAATCACGGAAACCGAAAATCCTGGAATCCCAGAATTTTATAGCTCAGAAAGCTAGGAATCCAGGCAATATCAAACCAACCAAAAAAAATCAAGAAATTGTGAAAATGAATGTCATGGACAAACCAATCACAAACCAAGAACATTCGGAAGCGGAAGACATCAAAACATATGGAAATGGACCCTTTTTGGCTAATCCTTTTTTCACTTTTCTTTTTCGGAAGACGAGTGGACGACGTTTTTATGAGGGCCCCATAAAAAGAGATCACTACCAAAAAATAATCTTGCTAATGGATAAACATACTATACACAGAGAACTCTTAAATTCTTGTACTCAAAAAAAAAGAAAGAAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAA</canonical>
            <polymorphic>TTGAAATTTTACAGGAAATCCAGTTTTTGCCAGAATTTAAATTTCAAGATTTGGAGATTCTGATATTCTAGAATTCTGGAATCCAAAAATCTAGAAATCACGGAAACCGAAAATCCTGGAATCCCAGAATTTTATAGCTCAGAAAGCTAGGAATCCAGGCAATATCAAACCAACCAAAAAAAATCAAGAAATTGTGAAAATGAATGTCATGGACAAACCAATCACAAACCAAGAACATTCGGAAGCGGAAGACATCAAAACATATGGAAATGGACCCTTTTTGGCTAATCCTTTTTTCACTTTTCTTTTTCGGAAGACGAGTGGACGACGTTTTTATGAGGGCCCCATAAAAAGAGATCACTACCAAAAAATAATCTTGCTAATGGATAAACATACTATACACAGAGAACTCTTAAATTCTTGTACTCAAAAAAAAAGAAAGAAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATARTCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGAAGGGCATTAGTCATTA</pcr_primer_p1>
		<pcr_primer_p2>CTTCTATATTCCCTGGAGACACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAG</canonical_amplicon>
		<polymorphic_amplicon>AAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATARTCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28052</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>544853</contig_pos>
        <strand>+</strand>
        <context>TTGAACATAR[C/T]CATACTGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAA</left_flank>
        <right_flank>CATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAATTTTACAGGAAATCCAGTTTTTGCCAGAATTTAAATTTCAAGATTTGGAGATTCTGATATTCTAGAATTCTGGAATCCAAAAATCTAGAAATCACGGAAACCGAAAATCCTGGAATCCCAGAATTTTATAGCTCAGAAAGCTAGGAATCCAGGCAATATCAAACCAACCAAAAAAAATCAAGAAATTGTGAAAATGAATGTCATGGACAAACCAATCACAAACCAAGAACATTCGGAAGCGGAAGACATCAAAACATATGGAAATGGACCCTTTTTGGCTAATCCTTTTTTCACTTTTCTTTTTCGGAAGACGAGTGGACGACGTTTTTATGAGGGCCCCATAAAAAGAGATCACTACCAAAAAATAATCTTGCTAATGGATAAACATACTATACACAGAGAACTCTTAAATTCTTGTACTCAAAAAAAAAGAAAGAAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAA</canonical>
            <polymorphic>TGAAATTTTACAGGAAATCCAGTTTTTGCCAGAATTTAAATTTCAAGATTTGGAGATTCTGATATTCTAGAATTCTGGAATCCAAAAATCTAGAAATCACGGAAACCGAAAATCCTGGAATCCCAGAATTTTATAGCTCAGAAAGCTAGGAATCCAGGCAATATCAAACCAACCAAAAAAAATCAAGAAATTGTGAAAATGAATGTCATGGACAAACCAATCACAAACCAAGAACATTCGGAAGCGGAAGACATCAAAACATATGGAAATGGACCCTTTTTGGCTAATCCTTTTTTCACTTTTCTTTTTCGGAAGACGAGTGGACGACGTTTTTATGAGGGCCCCATAAAAAGAGATCACTACCAAAAAATAATCTTGCTAATGGATAAACATACTATACACAGAGAACTCTTAAATTCTTGTACTCAAAAAAAAAGAAAGAAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAAYCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGAAGGGCATTAGTCATTA</pcr_primer_p1>
		<pcr_primer_p2>CTTCTATATTCCCTGGAGACACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAG</canonical_amplicon>
		<polymorphic_amplicon>AAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAAYCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28053</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>544870</contig_pos>
        <strand>+</strand>
        <context>GAAAATGACA[C/T]CGGGGCTYCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACA</left_flank>
        <right_flank>CGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAGTTTTTGCCAGAATTTAAATTTCAAGATTTGGAGATTCTGATATTCTAGAATTCTGGAATCCAAAAATCTAGAAATCACGGAAACCGAAAATCCTGGAATCCCAGAATTTTATAGCTCAGAAAGCTAGGAATCCAGGCAATATCAAACCAACCAAAAAAAATCAAGAAATTGTGAAAATGAATGTCATGGACAAACCAATCACAAACCAAGAACATTCGGAAGCGGAAGACATCAAAACATATGGAAATGGACCCTTTTTGGCTAATCCTTTTTTCACTTTTCTTTTTCGGAAGACGAGTGGACGACGTTTTTATGAGGGCCCCATAAAAAGAGATCACTACCAAAAAATAATCTTGCTAATGGATAAACATACTATACACAGAGAACTCTTAAATTCTTGTACTCAAAAAAAAAGAAAGAAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAA</canonical>
            <polymorphic>TCCAGTTTTTGCCAGAATTTAAATTTCAAGATTTGGAGATTCTGATATTCTAGAATTCTGGAATCCAAAAATCTAGAAATCACGGAAACCGAAAATCCTGGAATCCCAGAATTTTATAGCTCAGAAAGCTAGGAATCCAGGCAATATCAAACCAACCAAAAAAAATCAAGAAATTGTGAAAATGAATGTCATGGACAAACCAATCACAAACCAAGAACATTCGGAAGCGGAAGACATCAAAACATATGGAAATGGACCCTTTTTGGCTAATCCTTTTTTCACTTTTCTTTTTCGGAAGACGAGTGGACGACGTTTTTATGAGGGCCCCATAAAAAGAGATCACTACCAAAAAATAATCTTGCTAATGGATAAACATACTATACACAGAGAACTCTTAAATTCTTGTACTCAAAAAAAAAGAAAGAAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACAYCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>363 245 156 98 98 40</canonical_bands>
                <polymorphic_bands>519 245 98 98 40</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>500 245 156 99</canonical_bands>
                <polymorphic_bands>656 245 99</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>133 115 96 82 75 65 52 51 43 42 37 35 35 28 26 25 24 15 11 7 3</canonical_bands>
                <polymorphic_bands>166 133 96 82 75 65 52 43 42 37 35 35 28 26 25 24 15 11 7 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGAAGGGCATTAGTCATTA</pcr_primer_p1>
		<pcr_primer_p2>CTTCTATATTCCCTGGAGACACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAG</canonical_amplicon>
		<polymorphic_amplicon>AAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACAYCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28054</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>544878</contig_pos>
        <strand>+</strand>
        <context>CAYCGGGGCT[C/T]CAGGAAGAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCT</left_flank>
        <right_flank>CAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCCAGAATTTAAATTTCAAGATTTGGAGATTCTGATATTCTAGAATTCTGGAATCCAAAAATCTAGAAATCACGGAAACCGAAAATCCTGGAATCCCAGAATTTTATAGCTCAGAAAGCTAGGAATCCAGGCAATATCAAACCAACCAAAAAAAATCAAGAAATTGTGAAAATGAATGTCATGGACAAACCAATCACAAACCAAGAACATTCGGAAGCGGAAGACATCAAAACATATGGAAATGGACCCTTTTTGGCTAATCCTTTTTTCACTTTTCTTTTTCGGAAGACGAGTGGACGACGTTTTTATGAGGGCCCCATAAAAAGAGATCACTACCAAAAAATAATCTTGCTAATGGATAAACATACTATACACAGAGAACTCTTAAATTCTTGTACTCAAAAAAAAAGAAAGAAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAG</canonical>
            <polymorphic>TTGCCAGAATTTAAATTTCAAGATTTGGAGATTCTGATATTCTAGAATTCTGGAATCCAAAAATCTAGAAATCACGGAAACCGAAAATCCTGGAATCCCAGAATTTTATAGCTCAGAAAGCTAGGAATCCAGGCAATATCAAACCAACCAAAAAAAATCAAGAAATTGTGAAAATGAATGTCATGGACAAACCAATCACAAACCAAGAACATTCGGAAGCGGAAGACATCAAAACATATGGAAATGGACCCTTTTTGGCTAATCCTTTTTTCACTTTTCTTTTTCGGAAGACGAGTGGACGACGTTTTTATGAGGGCCCCATAAAAAGAGATCACTACCAAAAAATAATCTTGCTAATGGATAAACATACTATACACAGAGAACTCTTAAATTCTTGTACTCAAAAAAAAAGAAAGAAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTYCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>462 342 94 24 23 19 15 13 8</canonical_bands>
                <polymorphic_bands>462 366 94 23 19 15 13 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGAAGGGCATTAGTCATTA</pcr_primer_p1>
		<pcr_primer_p2>CTTCTATATTCCCTGGAGACACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAG</canonical_amplicon>
		<polymorphic_amplicon>AAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTYCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28055</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>544968</contig_pos>
        <strand>+</strand>
        <context>TCTCCCGCTT[C/T]CACGAAGACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTT</left_flank>
        <right_flank>CACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAATCCCAGAATTTTATAGCTCAGAAAGCTAGGAATCCAGGCAATATCAAACCAACCAAAAAAAATCAAGAAATTGTGAAAATGAATGTCATGGACAAACCAATCACAAACCAAGAACATTCGGAAGCGGAAGACATCAAAACATATGGAAATGGACCCTTTTTGGCTAATCCTTTTTTCACTTTTCTTTTTCGGAAGACGAGTGGACGACGTTTTTATGAGGGCCCCATAAAAAGAGATCACTACCAAAAAATAATCTTGCTAATGGATAAACATACTATACACAGAGAACTCTTAAATTCTTGTACTCAAAAAAAAAGAAAGAAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAATGACAAAATGAGAAAATTCGAAAAGTTGGAAATTCGGAAATTGAGAAAACTCACTCCGAACTTCTGGATTT</canonical>
            <polymorphic>TGGAATCCCAGAATTTTATAGCTCAGAAAGCTAGGAATCCAGGCAATATCAAACCAACCAAAAAAAATCAAGAAATTGTGAAAATGAATGTCATGGACAAACCAATCACAAACCAAGAACATTCGGAAGCGGAAGACATCAAAACATATGGAAATGGACCCTTTTTGGCTAATCCTTTTTTCACTTTTCTTTTTCGGAAGACGAGTGGACGACGTTTTTATGAGGGCCCCATAAAAAGAGATCACTACCAAAAAATAATCTTGCTAATGGATAAACATACTATACACAGAGAACTCTTAAATTCTTGTACTCAAAAAAAAAGAAAGAAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTYCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAATGACAAAATGAGAAAATTCGAAAAGTTGGAAATTCGGAAATTGAGAAAACTCACTCCGAACTTCTGGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGAAGGGCATTAGTCATTA</pcr_primer_p1>
		<pcr_primer_p2>CTTCTATATTCCCTGGAGACACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAG</canonical_amplicon>
		<polymorphic_amplicon>AAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTYCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28056</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>544995</contig_pos>
        <strand>+</strand>
        <context>TCTGAATTTT[A/T]AAAGAAAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTT</left_flank>
        <right_flank>AAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCTAGGAATCCAGGCAATATCAAACCAACCAAAAAAAATCAAGAAATTGTGAAAATGAATGTCATGGACAAACCAATCACAAACCAAGAACATTCGGAAGCGGAAGACATCAAAACATATGGAAATGGACCCTTTTTGGCTAATCCTTTTTTCACTTTTCTTTTTCGGAAGACGAGTGGACGACGTTTTTATGAGGGCCCCATAAAAAGAGATCACTACCAAAAAATAATCTTGCTAATGGATAAACATACTATACACAGAGAACTCTTAAATTCTTGTACTCAAAAAAAAAGAAAGAAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAATGACAAAATGAGAAAATTCGAAAAGTTGGAAATTCGGAAATTGAGAAAACTCACTCCGAACTTCTGGATTTCGTAAAATGTCTGCATATTAGTGGAAT</canonical>
            <polymorphic>AAGCTAGGAATCCAGGCAATATCAAACCAACCAAAAAAAATCAAGAAATTGTGAAAATGAATGTCATGGACAAACCAATCACAAACCAAGAACATTCGGAAGCGGAAGACATCAAAACATATGGAAATGGACCCTTTTTGGCTAATCCTTTTTTCACTTTTCTTTTTCGGAAGACGAGTGGACGACGTTTTTATGAGGGCCCCATAAAAAGAGATCACTACCAAAAAATAATCTTGCTAATGGATAAACATACTATACACAGAGAACTCTTAAATTCTTGTACTCAAAAAAAAAGAAAGAAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTWAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAATGACAAAATGAGAAAATTCGAAAAGTTGGAAATTCGGAAATTGAGAAAACTCACTCCGAACTTCTGGATTTCGTAAAATGTCTGCATATTAGTGGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 270 228</canonical_bands>
                <polymorphic_bands>730 270</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCATTAGTCATTAGAAATGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CAGTGACACAAACCTTCTATATTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTG</canonical_amplicon>
		<polymorphic_amplicon>GCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTWAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28057</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>545090</contig_pos>
        <strand>+</strand>
        <context>KAAAGGAAAG[C/T]TCCTAGTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAG</left_flank>
        <right_flank>TCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGAAGCGGAAGACATCAAAACATATGGAAATGGACCCTTTTTGGCTAATCCTTTTTTCACTTTTCTTTTTCGGAAGACGAGTGGACGACGTTTTTATGAGGGCCCCATAAAAAGAGATCACTACCAAAAAATAATCTTGCTAATGGATAAACATACTATACACAGAGAACTCTTAAATTCTTGTACTCAAAAAAAAAGAAAGAAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAATGACAAAATGAGAAAATTCGAAAAGTTGGAAATTCGGAAATTGAGAAAACTCACTCCGAACTTCTGGATTTCGTAAAATGTCTGCATATTAGTGGAATTTCTTGAATTTTCGAGTTTCTAAACTCTTGAATTCATAAGTTATTGAGTGTTTGAAATGTTGAAAATTTCAATATTTGAAACGATTCACAATTCT</canonical>
            <polymorphic>TCGGAAGCGGAAGACATCAAAACATATGGAAATGGACCCTTTTTGGCTAATCCTTTTTTCACTTTTCTTTTTCGGAAGACGAGTGGACGACGTTTTTATGAGGGCCCCATAAAAAGAGATCACTACCAAAAAATAATCTTGCTAATGGATAAACATACTATACACAGAGAACTCTTAAATTCTTGTACTCAAAAAAAAAGAAAGAAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGYTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAATGACAAAATGAGAAAATTCGAAAAGTTGGAAATTCGGAAATTGAGAAAACTCACTCCGAACTTCTGGATTTCGTAAAATGTCTGCATATTAGTGGAATTTCTTGAATTTTCGAGTTTCTAAACTCTTGAATTCATAAGTTATTGAGTGTTTGAAATGTTGAAAATTTCAATATTTGAAACGATTCACAATTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGAAGAAGAAGAAAGTGTCTC</pcr_primer_p1>
		<pcr_primer_p2>TGTAGCATTGCTCATCACTATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACA</canonical_amplicon>
		<polymorphic_amplicon>AGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGYTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28058</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>545101</contig_pos>
        <strand>+</strand>
        <context>TCCTAGTTTG[A/G]GAGAGAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTG</left_flank>
        <right_flank>GAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACATCAAAACATATGGAAATGGACCCTTTTTGGCTAATCCTTTTTTCACTTTTCTTTTTCGGAAGACGAGTGGACGACGTTTTTATGAGGGCCCCATAAAAAGAGATCACTACCAAAAAATAATCTTGCTAATGGATAAACATACTATACACAGAGAACTCTTAAATTCTTGTACTCAAAAAAAAAGAAAGAAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAATGACAAAATGAGAAAATTCGAAAAGTTGGAAATTCGGAAATTGAGAAAACTCACTCCGAACTTCTGGATTTCGTAAAATGTCTGCATATTAGTGGAATTTCTTGAATTTTCGAGTTTCTAAACTCTTGAATTCATAAGTTATTGAGTGTTTGAAATGTTGAAAATTTCAATATTTGAAACGATTCACAATTCTCAAAAAGTTTT</canonical>
            <polymorphic>AGACATCAAAACATATGGAAATGGACCCTTTTTGGCTAATCCTTTTTTCACTTTTCTTTTTCGGAAGACGAGTGGACGACGTTTTTATGAGGGCCCCATAAAAAGAGATCACTACCAAAAAATAATCTTGCTAATGGATAAACATACTATACACAGAGAACTCTTAAATTCTTGTACTCAAAAAAAAAGAAAGAAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGRGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAATGACAAAATGAGAAAATTCGAAAAGTTGGAAATTCGGAAATTGAGAAAACTCACTCCGAACTTCTGGATTTCGTAAAATGTCTGCATATTAGTGGAATTTCTTGAATTTTCGAGTTTCTAAACTCTTGAATTCATAAGTTATTGAGTGTTTGAAATGTTGAAAATTTCAATATTTGAAACGATTCACAATTCTCAAAAAGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGAAGAAGAAGAAAGTGTCTC</pcr_primer_p1>
		<pcr_primer_p2>TGTAGCATTGCTCATCACTATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACA</canonical_amplicon>
		<polymorphic_amplicon>AGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGRGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28059</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>545122</contig_pos>
        <strand>+</strand>
        <context>TAGTGGGCAA[A/G]AAACACCTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAA</left_flank>
        <right_flank>AAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGACCCTTTTTGGCTAATCCTTTTTTCACTTTTCTTTTTCGGAAGACGAGTGGACGACGTTTTTATGAGGGCCCCATAAAAAGAGATCACTACCAAAAAATAATCTTGCTAATGGATAAACATACTATACACAGAGAACTCTTAAATTCTTGTACTCAAAAAAAAAGAAAGAAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAATGACAAAATGAGAAAATTCGAAAAGTTGGAAATTCGGAAATTGAGAAAACTCACTCCGAACTTCTGGATTTCGTAAAATGTCTGCATATTAGTGGAATTTCTTGAATTTTCGAGTTTCTAAACTCTTGAATTCATAAGTTATTGAGTGTTTGAAATGTTGAAAATTTCAATATTTGAAACGATTCACAATTCTCAAAAAGTTTTGAACAAATTCCGATTTTGGAA</canonical>
            <polymorphic>TGGACCCTTTTTGGCTAATCCTTTTTTCACTTTTCTTTTTCGGAAGACGAGTGGACGACGTTTTTATGAGGGCCCCATAAAAAGAGATCACTACCAAAAAATAATCTTGCTAATGGATAAACATACTATACACAGAGAACTCTTAAATTCTTGTACTCAAAAAAAAAGAAAGAAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAARAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAATGACAAAATGAGAAAATTCGAAAAGTTGGAAATTCGGAAATTGAGAAAACTCACTCCGAACTTCTGGATTTCGTAAAATGTCTGCATATTAGTGGAATTTCTTGAATTTTCGAGTTTCTAAACTCTTGAATTCATAAGTTATTGAGTGTTTGAAATGTTGAAAATTTCAATATTTGAAACGATTCACAATTCTCAAAAAGTTTTGAACAAATTCCGATTTTGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGAAGAAGAAGAAAGTGTCTC</pcr_primer_p1>
		<pcr_primer_p2>TGTAGCATTGCTCATCACTATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACA</canonical_amplicon>
		<polymorphic_amplicon>AGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAARAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28060</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>545271</contig_pos>
        <strand>+</strand>
        <context>ATTTTCATTA[C/T]CTGGGGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTA</left_flank>
        <right_flank>CTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTGTACTCAAAAAAAAAGAAAGAAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAATGACAAAATGAGAAAATTCGAAAAGTTGGAAATTCGGAAATTGAGAAAACTCACTCCGAACTTCTGGATTTCGTAAAATGTCTGCATATTAGTGGAATTTCTTGAATTTTCGAGTTTCTAAACTCTTGAATTCATAAGTTATTGAGTGTTTGAAATGTTGAAAATTTCAATATTTGAAACGATTCACAATTCTCAAAAAGTTTTGAACAAATTCCGATTTTGGAATTTTTTAATTTCCAAAATTAGAAGACTCTTGAAATGTTTTCATTCTCAAAAACTTCAGAATATCAAAAAAAAAAATCAAAAAGTCTTAAAAGTCGTATATTTTTGACACTCCATGATTTTTGGAAAATTCAGGAAATTATGAAATACAG</canonical>
            <polymorphic>CTTGTACTCAAAAAAAAAGAAAGAAATGAAGGGCATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTAYCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAATGACAAAATGAGAAAATTCGAAAAGTTGGAAATTCGGAAATTGAGAAAACTCACTCCGAACTTCTGGATTTCGTAAAATGTCTGCATATTAGTGGAATTTCTTGAATTTTCGAGTTTCTAAACTCTTGAATTCATAAGTTATTGAGTGTTTGAAATGTTGAAAATTTCAATATTTGAAACGATTCACAATTCTCAAAAAGTTTTGAACAAATTCCGATTTTGGAATTTTTTAATTTCCAAAATTAGAAGACTCTTGAAATGTTTTCATTCTCAAAAACTTCAGAATATCAAAAAAAAAAATCAAAAAGTCTTAAAAGTCGTATATTTTTGACACTCCATGATTTTTGGAAAATTCAGGAAATTATGAAATACAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>499 245 156 100</canonical_bands>
                <polymorphic_bands>744 156 100</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>500 245 156 99</canonical_bands>
                <polymorphic_bands>745 156 99</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>499 256 245</canonical_bands>
                <polymorphic_bands>744 256</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGAAATGTTCAAAACAAGAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAATTTCTGCTTTTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTAYCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28061</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>545304</contig_pos>
        <strand>+</strand>
        <context>TGACTCCGCC[A/G]WTTTTCCGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCC</left_flank>
        <right_flank>ATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAATGACAAAATGAGAAAATTCGAAAAGTTGGAAATTCGGAAATTGAGAAAACTCACTCCGAACTTCTGGATTTCGTAAAATGTCTGCATATTAGTGGAATTTCTTGAATTTTCGAGTTTCTAAACTCTTGAATTCATAAGTTATTGAGTGTTTGAAATGTTGAAAATTTCAATATTTGAAACGATTCACAATTCTCAAAAAGTTTTGAACAAATTCCGATTTTGGAATTTTTTAATTTCCAAAATTAGAAGACTCTTGAAATGTTTTCATTCTCAAAAACTTCAGAATATCAAAAAAAAAAATCAAAAAGTCTTAAAAGTCGTATATTTTTGACACTCCATGATTTTTGGAAAATTCAGGAAATTATGAAATACAGGGATTTCAGAATTCGCGATTTTTATGAGTTTCA</canonical>
            <polymorphic>CATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCRATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAATGACAAAATGAGAAAATTCGAAAAGTTGGAAATTCGGAAATTGAGAAAACTCACTCCGAACTTCTGGATTTCGTAAAATGTCTGCATATTAGTGGAATTTCTTGAATTTTCGAGTTTCTAAACTCTTGAATTCATAAGTTATTGAGTGTTTGAAATGTTGAAAATTTCAATATTTGAAACGATTCACAATTCTCAAAAAGTTTTGAACAAATTCCGATTTTGGAATTTTTTAATTTCCAAAATTAGAAGACTCTTGAAATGTTTTCATTCTCAAAAACTTCAGAATATCAAAAAAAAAAATCAAAAAGTCTTAAAAGTCGTATATTTTTGACACTCCATGATTTTTGGAAAATTCAGGAAATTATGAAATACAGGGATTTCAGAATTCGCGATTTTTATGAGTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGAAATGTTCAAAACAAGAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAATTTCTGCTTTTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCRATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28062</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>545305</contig_pos>
        <strand>+</strand>
        <context>GACTCCGCCR[A/T]TTTTCCGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCC</left_flank>
        <right_flank>TTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAATGACAAAATGAGAAAATTCGAAAAGTTGGAAATTCGGAAATTGAGAAAACTCACTCCGAACTTCTGGATTTCGTAAAATGTCTGCATATTAGTGGAATTTCTTGAATTTTCGAGTTTCTAAACTCTTGAATTCATAAGTTATTGAGTGTTTGAAATGTTGAAAATTTCAATATTTGAAACGATTCACAATTCTCAAAAAGTTTTGAACAAATTCCGATTTTGGAATTTTTTAATTTCCAAAATTAGAAGACTCTTGAAATGTTTTCATTCTCAAAAACTTCAGAATATCAAAAAAAAAAATCAAAAAGTCTTAAAAGTCGTATATTTTTGACACTCCATGATTTTTGGAAAATTCAGGAAATTATGAAATACAGGGATTTCAGAATTCGCGATTTTTATGAGTTTCAA</canonical>
            <polymorphic>ATTAGTCATTAGAAATGGAAATAAAAACAATTATTTTTTGAACATAATCATACTGAAAATGACACCGGGGCTTCAGGAAGAGGTATTTTGAAATTTTCGGGAGGAAATTTTTGTGAAAAAGGAGAATGAGTCCCTGAGAATGATGGAACACTTCTCCCGCTTCCACGAAGACCATGTCTTCTGAATTTTAAAAGAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCWTTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAATGACAAAATGAGAAAATTCGAAAAGTTGGAAATTCGGAAATTGAGAAAACTCACTCCGAACTTCTGGATTTCGTAAAATGTCTGCATATTAGTGGAATTTCTTGAATTTTCGAGTTTCTAAACTCTTGAATTCATAAGTTATTGAGTGTTTGAAATGTTGAAAATTTCAATATTTGAAACGATTCACAATTCTCAAAAAGTTTTGAACAAATTCCGATTTTGGAATTTTTTAATTTCCAAAATTAGAAGACTCTTGAAATGTTTTCATTCTCAAAAACTTCAGAATATCAAAAAAAAAAATCAAAAAGTCTTAAAAGTCGTATATTTTTGACACTCCATGATTTTTGGAAAATTCAGGAAATTATGAAATACAGGGATTTCAGAATTCGCGATTTTTATGAGTTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGAAATGTTCAAAACAAGAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAATTTCTGCTTTTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCWTTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28063</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>545498</contig_pos>
        <strand>+</strand>
        <context>AGTGGAATTT[C/T]TTGAATYTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCACTCCGAACTTCTGGATTTCGTAAAATGTCTGCATATTAGTGGAATTT</left_flank>
        <right_flank>TTGAATTTTCGAGTTTCTAAACTCTTGAATTCATAAGTTATTGAGTGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAATGACAAAATGAGAAAATTCGAAAAGTTGGAAATTCGGAAATTGAGAAAACTCACTCCGAACTTCTGGATTTCGTAAAATGTCTGCATATTAGTGGAATTTCTTGAATTTTCGAGTTTCTAAACTCTTGAATTCATAAGTTATTGAGTGTTTGAAATGTTGAAAATTTCAATATTTGAAACGATTCACAATTCTCAAAAAGTTTTGAACAAATTCCGATTTTGGAATTTTTTAATTTCCAAAATTAGAAGACTCTTGAAATGTTTTCATTCTCAAAAACTTCAGAATATCAAAAAAAAAAATCAAAAAGTCTTAAAAGTCGTATATTTTTGACACTCCATGATTTTTGGAAAATTCAGGAAATTATGAAATACAGGGATTTCAGAATTCGCGATTTTTATGAGTTTCAACTATTTTTGAATTTTTAGGCATTTCATAATTTCCTGTGTTGAATTTCATAATTTTTCGAATTTTCCGAAAAGCGGAAATTTTCTTTTAAAAAATCCGGAATTCCTATATTGAGTCTACCGTATACATTCTAATATCTACCGTAATCACTCTAAGCCTTCCAAACCGTAAACTTTGAGTTCATATATCCCATTT</canonical>
            <polymorphic>GAAAAGAAGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAATGACAAAATGAGAAAATTCGAAAAGTTGGAAATTCGGAAATTGAGAAAACTCACTCCGAACTTCTGGATTTCGTAAAATGTCTGCATATTAGTGGAATTTYTTGAATTTTCGAGTTTCTAAACTCTTGAATTCATAAGTTATTGAGTGTTTGAAATGTTGAAAATTTCAATATTTGAAACGATTCACAATTCTCAAAAAGTTTTGAACAAATTCCGATTTTGGAATTTTTTAATTTCCAAAATTAGAAGACTCTTGAAATGTTTTCATTCTCAAAAACTTCAGAATATCAAAAAAAAAAATCAAAAAGTCTTAAAAGTCGTATATTTTTGACACTCCATGATTTTTGGAAAATTCAGGAAATTATGAAATACAGGGATTTCAGAATTCGCGATTTTTATGAGTTTCAACTATTTTTGAATTTTTAGGCATTTCATAATTTCCTGTGTTGAATTTCATAATTTTTCGAATTTTCCGAAAAGCGGAAATTTTCTTTTAAAAAATCCGGAATTCCTATATTGAGTCTACCGTATACATTCTAATATCTACCGTAATCACTCTAAGCCTTCCAAACCGTAAACTTTGAGTTCATATATCCCATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>367 128 115 102 98 96 37 33 24</canonical_bands>
                <polymorphic_bands>367 128 115 102 98 96 61 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATTTCTTTGCATATAAAATCA</pcr_primer_p1>
		<pcr_primer_p2>TTCAACATTTCAAACACTCAATA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAATGACAAAATGAGAAAATTCGAAAAGTTGGAAATTCGGAAATTGAGAAAACTCACTCCGAACTTCTGGATTTCGTAAAATGTCTGCATATTAGTGGAATTTCTTGAATTTTCGAGTTTCTAAACTCTTGAATTCATAAGTTATTGAGTGTTTGAAATGTTGAA</canonical_amplicon>
		<polymorphic_amplicon>CCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAATGACAAAATGAGAAAATTCGAAAAGTTGGAAATTCGGAAATTGAGAAAACTCACTCCGAACTTCTGGATTTCGTAAAATGTCTGCATATTAGTGGAATTTYTTGAATTTTCGAGTTTCTAAACTCTTGAATTCATAAGTTATTGAGTGTTTGAAATGTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28064</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>545505</contig_pos>
        <strand>+</strand>
        <context>TTTYTTGAAT[C/T]TTCGAGTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAACTTCTGGATTTCGTAAAATGTCTGCATATTAGTGGAATTTCTTGAAT</left_flank>
        <right_flank>TTCGAGTTTCTAAACTCTTGAATTCATAAGTTATTGAGTGTTTGAAATGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAATGACAAAATGAGAAAATTCGAAAAGTTGGAAATTCGGAAATTGAGAAAACTCACTCCGAACTTCTGGATTTCGTAAAATGTCTGCATATTAGTGGAATTTCTTGAATTTTCGAGTTTCTAAACTCTTGAATTCATAAGTTATTGAGTGTTTGAAATGTTGAAAATTTCAATATTTGAAACGATTCACAATTCTCAAAAAGTTTTGAACAAATTCCGATTTTGGAATTTTTTAATTTCCAAAATTAGAAGACTCTTGAAATGTTTTCATTCTCAAAAACTTCAGAATATCAAAAAAAAAAATCAAAAAGTCTTAAAAGTCGTATATTTTTGACACTCCATGATTTTTGGAAAATTCAGGAAATTATGAAATACAGGGATTTCAGAATTCGCGATTTTTATGAGTTTCAACTATTTTTGAATTTTTAGGCATTTCATAATTTCCTGTGTTGAATTTCATAATTTTTCGAATTTTCCGAAAAGCGGAAATTTTCTTTTAAAAAATCCGGAATTCCTATATTGAGTCTACCGTATACATTCTAATATCTACCGTAATCACTCTAAGCCTTCCAAACCGTAAACTTTGAGTTCATATATCCCATTTCCTGCGA</canonical>
            <polymorphic>AGAAGAAGAAGAAAGTGTCTCCAGGGAATATAGAAGGTTTGTGTCACTGGACATGACTTTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAATGACAAAATGAGAAAATTCGAAAAGTTGGAAATTCGGAAATTGAGAAAACTCACTCCGAACTTCTGGATTTCGTAAAATGTCTGCATATTAGTGGAATTTCTTGAATYTTCGAGTTTCTAAACTCTTGAATTCATAAGTTATTGAGTGTTTGAAATGTTGAAAATTTCAATATTTGAAACGATTCACAATTCTCAAAAAGTTTTGAACAAATTCCGATTTTGGAATTTTTTAATTTCCAAAATTAGAAGACTCTTGAAATGTTTTCATTCTCAAAAACTTCAGAATATCAAAAAAAAAAATCAAAAAGTCTTAAAAGTCGTATATTTTTGACACTCCATGATTTTTGGAAAATTCAGGAAATTATGAAATACAGGGATTTCAGAATTCGCGATTTTTATGAGTTTCAACTATTTTTGAATTTTTAGGCATTTCATAATTTCCTGTGTTGAATTTCATAATTTTTCGAATTTTCCGAAAAGCGGAAATTTTCTTTTAAAAAATCCGGAATTCCTATATTGAGTCTACCGTATACATTCTAATATCTACCGTAATCACTCTAAGCCTTCCAAACCGTAAACTTTGAGTTCATATATCCCATTTCCTGCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>355 127 102 65 47 34 34 33 32 27 24 24 22 18 17 16 14 9</canonical_bands>
                <polymorphic_bands>355 127 102 65 47 34 34 33 33 32 27 24 22 18 17 16 14</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>252 110 103 102 57 34 34 25 24 24 24 22 22 18 18 16 15 14 14 12 9 9 9 9 8 8 8</canonical_bands>
                <polymorphic_bands>252 110 103 102 57 34 34 33 25 24 24 22 22 18 18 16 15 14 14 12 9 9 9 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATTTCTTTGCATATAAAATCA</pcr_primer_p1>
		<pcr_primer_p2>TTCAACATTTCAAACACTCAATA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAATGACAAAATGAGAAAATTCGAAAAGTTGGAAATTCGGAAATTGAGAAAACTCACTCCGAACTTCTGGATTTCGTAAAATGTCTGCATATTAGTGGAATTTCTTGAATTTTCGAGTTTCTAAACTCTTGAATTCATAAGTTATTGAGTGTTTGAAATGTTGAA</canonical_amplicon>
		<polymorphic_amplicon>CCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAATGACAAAATGAGAAAATTCGAAAAGTTGGAAATTCGGAAATTGAGAAAACTCACTCCGAACTTCTGGATTTCGTAAAATGTCTGCATATTAGTGGAATTTCTTGAATYTTCGAGTTTCTAAACTCTTGAATTCATAAGTTATTGAGTGTTTGAAATGTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28065</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>545563</contig_pos>
        <strand>+</strand>
        <context>TGTTGAAAAT[A/T]TCAATATTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCTAAACTCTTGAATTCATAAGTTATTGAGTGTTTGAAATGTTGAAAAT</left_flank>
        <right_flank>TCAATATTTGAAACGATTCACAATTCTCAAAAAGTTTTGAACAAATTCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAATGACAAAATGAGAAAATTCGAAAAGTTGGAAATTCGGAAATTGAGAAAACTCACTCCGAACTTCTGGATTTCGTAAAATGTCTGCATATTAGTGGAATTTCTTGAATTTTCGAGTTTCTAAACTCTTGAATTCATAAGTTATTGAGTGTTTGAAATGTTGAAAATTTCAATATTTGAAACGATTCACAATTCTCAAAAAGTTTTGAACAAATTCCGATTTTGGAATTTTTTAATTTCCAAAATTAGAAGACTCTTGAAATGTTTTCATTCTCAAAAACTTCAGAATATCAAAAAAAAAAATCAAAAAGTCTTAAAAGTCGTATATTTTTGACACTCCATGATTTTTGGAAAATTCAGGAAATTATGAAATACAGGGATTTCAGAATTCGCGATTTTTATGAGTTTCAACTATTTTTGAATTTTTAGGCATTTCATAATTTCCTGTGTTGAATTTCATAATTTTTCGAATTTTCCGAAAAGCGGAAATTTTCTTTTAAAAAATCCGGAATTCCTATATTGAGTCTACCGTATACATTCTAATATCTACCGTAATCACTCTAAGCCTTCCAAACCGTAAACTTTGAGTTCATATATCCCATTTCCTGCGACAGATAACAAAAAGTGAACAACAGATAAAATGTTCATCATATTACCAAAAACCTTTTA</canonical>
            <polymorphic>TTTTGGGGGTCAAAAATAAAGGAAAGTTCCTAGTTTGAGAGAGAAAATTAGTGGGCAAGAAACACCTATTTTTGGAGGAGAAGAGGGAAATGTTCAAAACAAGAGTGGCAGAAAAGAAATGAAAAAATAATAGGGTCCAGTGGGAGTATTTTGAGAAGGGATCAGTGGATAGTGATGAGCAATGCTACAGTATTATTATTTTCATTACCTGGGGAAAAGGGGGGCGTTTCTGACTCCGCCCATTTTCCGATTTCCATTTCTTTGCATATAAAATCAATGATTCGCAGAAATAACAAAAATTCAAGAAAAAATTAGAAAAGCAGAAATTCAAAAATGACAAAATGAGAAAATTCGAAAAGTTGGAAATTCGGAAATTGAGAAAACTCACTCCGAACTTCTGGATTTCGTAAAATGTCTGCATATTAGTGGAATTTCTTGAATTTTCGAGTTTCTAAACTCTTGAATTCATAAGTTATTGAGTGTTTGAAATGTTGAAAATWTCAATATTTGAAACGATTCACAATTCTCAAAAAGTTTTGAACAAATTCCGATTTTGGAATTTTTTAATTTCCAAAATTAGAAGACTCTTGAAATGTTTTCATTCTCAAAAACTTCAGAATATCAAAAAAAAAAATCAAAAAGTCTTAAAAGTCGTATATTTTTGACACTCCATGATTTTTGGAAAATTCAGGAAATTATGAAATACAGGGATTTCAGAATTCGCGATTTTTATGAGTTTCAACTATTTTTGAATTTTTAGGCATTTCATAATTTCCTGTGTTGAATTTCATAATTTTTCGAATTTTCCGAAAAGCGGAAATTTTCTTTTAAAAAATCCGGAATTCCTATATTGAGTCTACCGTATACATTCTAATATCTACCGTAATCACTCTAAGCCTTCCAAACCGTAAACTTTGAGTTCATATATCCCATTTCCTGCGACAGATAACAAAAAGTGAACAACAGATAAAATGTTCATCATATTACCAAAAACCTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>297 160 127 65 47 34 34 33 32 27 24 24 22 18 17 16 14 9</canonical_bands>
                <polymorphic_bands>297 160 127 81 65 34 33 32 27 24 24 22 18 17 16 14 9</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>252 160 110 57 45 34 34 25 24 24 24 22 22 18 18 16 15 14 14 12 9 9 9 9 8 8 8</canonical_bands>
                <polymorphic_bands>252 160 110 59 57 45 34 24 24 24 22 22 18 18 16 15 14 14 12 9 9 9 9 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAAAATGTCTGCATATTAGTGGA</pcr_primer_p1>
		<pcr_primer_p2>ACGACTTTTAAGACTTTTTGATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTAAAATGTCTGCATATTAGTGGAATTTCTTGAATTTTCGAGTTTCTAAACTCTTGAATTCATAAGTTATTGAGTGTTTGAAATGTTGAAAATTTCAATATTTGAAACGATTCACAATTCTCAAAAAGTTTTGAACAAATTCCGATTTTGGAATTTTTTAATTTCCAAAATTAGAAGACTCTTGAAATGTTTTCATTCTCAAAAACTTCAGAATATCAAAAAAAAAAATCAAAAAGTCTTAAAAGTCGT</canonical_amplicon>
		<polymorphic_amplicon>GTAAAATGTCTGCATATTAGTGGAATTTCTTGAATTTTCGAGTTTCTAAACTCTTGAATTCATAAGTTATTGAGTGTTTGAAATGTTGAAAATWTCAATATTTGAAACGATTCACAATTCTCAAAAAGTTTTGAACAAATTCCGATTTTGGAATTTTTTAATTTCCAAAATTAGAAGACTCTTGAAATGTTTTCATTCTCAAAAACTTCAGAATATCAAAAAAAAAAATCAAAAAGTCTTAAAAGTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28066</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>573345</contig_pos>
        <strand>+</strand>
        <context>CTAAGCAGAA[A/G]GCCTCCGATG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACTCCGCCAAGGACAAGGCTTCTGGAGCCTGGGACGCTGCTAAGCAGAA</left_flank>
        <right_flank>GCCTCCGATGCTAAGGATGCCGTCAAGGATGCTGTCAATGAGTTGTAAAC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCGCTGCCGATGCCGCTGAGAACGCCAAGGAAAAGTCCAAGTCCTATGCTGAACAAATCGGCGACACTGTCTCTGGAGCCTATCAGGCTACTAAAGAAAAGGTTTCTGGAATGTTCGGAGATGCCAAGGAAGAGGCTGAGGTGAAAAAGGAAGAGGCTAAGGTGAGATTCAACACTAGAACCCACATAGGAAAAATATAAAATTCCAGATCAAGGCTGGAAATGCCAAGGACGCTGTGAAGGACAAGGCTGCTGAGACCATGGACAAGGCCAACGACGCCTATGAGAACGCCAAGGCTAACGTTCAAAAGAGATCTTCCGAGGGATACCATGAGGCCAAGAGCAAGACTTCTGATACCATTGAATCTGCCAAGGACAAGGCCGGACAAGCCAAAGACGCCGCTGGAAACGCCGCTGGAAACGCCAAGGACAAGGCCGCCGGAGCTTACGACTCCGCCAAGGACAAGGCTTCTGGAGCCTGGGACGCTGCTAAGCAGAAGGCCTCCGATGCTAAGGATGCCGTCAAGGATGCTGTCAATGAGTTGTAAACAGTAACAACGAAATTAATTGTCCCATAATTGCCACTAATTGCTATATGTCCAATTTTCTTCCAACTTTAAAAAAGTGATGGGTATTTGACTCCACAATATTCAACTTCTCCCTCAAATTCTTTGAATTTTCAACCACTTTTCTTTCTTTCTGTACAATATGGTCTTGACTTTTTTTGATGTAAATAAACTAGATTTCGCAAAATTCTTTAAAAGTAAAAGTGAAATATAAATTAAAAAATGGAAAAATTGAAAATTGACTCATTCAAAAATGTGAGACTAAATCATTGAAAAAGGTTTACAAGGGAGTTACTTGAGGGAGCAGTTTTAACTTTTTTTTAAATTTTGGGAGCAGATAGAAGAGCTTATGTGGATTCCAAATCTGTTAAAAAATCAGCAAAATGCTCTCGTGAGCTGAGTTATGACCTAGAAAAGTTTCCCTATGATTAAGC</canonical>
            <polymorphic>GCCGCTGCCGATGCCGCTGAGAACGCCAAGGAAAAGTCCAAGTCCTATGCTGAACAAATCGGCGACACTGTCTCTGGAGCCTATCAGGCTACTAAAGAAAAGGTTTCTGGAATGTTCGGAGATGCCAAGGAAGAGGCTGAGGTGAAAAAGGAAGAGGCTAAGGTGAGATTCAACACTAGAACCCACATAGGAAAAATATAAAATTCCAGATCAAGGCTGGAAATGCCAAGGACGCTGTGAAGGACAAGGCTGCTGAGACCATGGACAAGGCCAACGACGCCTATGAGAACGCCAAGGCTAACGTTCAAAAGAGATCTTCCGAGGGATACCATGAGGCCAAGAGCAAGACTTCTGATACCATTGAATCTGCCAAGGACAAGGCCGGACAAGCCAAAGACGCCGCTGGAAACGCCGCTGGAAACGCCAAGGACAAGGCCGCCGGAGCTTACGACTCCGCCAAGGACAAGGCTTCTGGAGCCTGGGACGCTGCTAAGCAGAARGCCTCCGATGCTAAGGATGCCGTCAAGGATGCTGTCAATGAGTTGTAAACAGTAACAACGAAATTAATTGTCCCATAATTGCCACTAATTGCTATATGTCCAATTTTCTTCCAACTTTAAAAAAGTGATGGGTATTTGACTCCACAATATTCAACTTCTCCCTCAAATTCTTTGAATTTTCAACCACTTTTCTTTCTTTCTGTACAATATGGTCTTGACTTTTTTTGATGTAAATAAACTAGATTTCGCAAAATTCTTTAAAAGTAAAAGTGAAATATAAATTAAAAAATGGAAAAATTGAAAATTGACTCATTCAAAAATGTGAGACTAAATCATTGAAAAAGGTTTACAAGGGAGTTACTTGAGGGAGCAGTTTTAACTTTTTTTTAAATTTTGGGAGCAGATAGAAGAGCTTATGTGGATTCCAAATCTGTTAAAAAATCAGCAAAATGCTCTCGTGAGCTGAGTTATGACCTAGAAAAGTTTCCCTATGATTAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGGCCT</site>
                <isoschizomers>
                    <enzyme>AatI</enzyme>
                    <enzyme>Eco147I</enzyme>
                    <enzyme>PceI</enzyme>
                    <enzyme>SseBI</enzyme>
                    <enzyme>StuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>499 270 66 66 54 45</canonical_bands>
                <polymorphic_bands>565 270 66 54 45</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>411 79 59 50 48 45 45 39 38 33 27 24 24 21 21 9 9 9 9</canonical_bands>
                <polymorphic_bands>435 79 59 50 48 45 45 39 38 33 27 24 21 21 9 9 9 9</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>499 270 165 66</canonical_bands>
                <polymorphic_bands>664 270 66</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGACTTCTGATACCATTGAA</pcr_primer_p1>
		<pcr_primer_p2>ATATAGCAATTAGTGGCAATTATG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CAAGACTTCTGATACCATTGAATCTGCCAAGGACAAGGCCGGACAAGCCAAAGACGCCGCTGGAAACGCCGCTGGAAACGCCAAGGACAAGGCCGCCGGAGCTTACGACTCCGCCAAGGACAAGGCTTCTGGAGCCTGGGACGCTGCTAAGCAGAAGGCCTCCGATGCTAAGGATGCCGTCAAGGATGCTGTCAATGAGTTGTAAACAGTAACAACGAAATTAATTGTCCCATAATTGCCACTAATTGCTATAT</canonical_amplicon>
		<polymorphic_amplicon>CAAGACTTCTGATACCATTGAATCTGCCAAGGACAAGGCCGGACAAGCCAAAGACGCCGCTGGAAACGCCGCTGGAAACGCCAAGGACAAGGCCGCCGGAGCTTACGACTCCGCCAAGGACAAGGCTTCTGGAGCCTGGGACGCTGCTAAGCAGAARGCCTCCGATGCTAAGGATGCCGTCAAGGATGCTGTCAATGAGTTGTAAACAGTAACAACGAAATTAATTGTCCCATAATTGCCACTAATTGCTATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28067</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>573399</contig_pos>
        <strand>+</strand>
        <context>TGTAAACAGT[A/T]ACAACGAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCGATGCTAAGGATGCCGTCAAGGATGCTGTCAATGAGTTGTAAACAGT</left_flank>
        <right_flank>ACAACGAAATTAATTGTCCCATAATTGCCACTAATTGCTATATGTCCAAT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATCGGCGACACTGTCTCTGGAGCCTATCAGGCTACTAAAGAAAAGGTTTCTGGAATGTTCGGAGATGCCAAGGAAGAGGCTGAGGTGAAAAAGGAAGAGGCTAAGGTGAGATTCAACACTAGAACCCACATAGGAAAAATATAAAATTCCAGATCAAGGCTGGAAATGCCAAGGACGCTGTGAAGGACAAGGCTGCTGAGACCATGGACAAGGCCAACGACGCCTATGAGAACGCCAAGGCTAACGTTCAAAAGAGATCTTCCGAGGGATACCATGAGGCCAAGAGCAAGACTTCTGATACCATTGAATCTGCCAAGGACAAGGCCGGACAAGCCAAAGACGCCGCTGGAAACGCCGCTGGAAACGCCAAGGACAAGGCCGCCGGAGCTTACGACTCCGCCAAGGACAAGGCTTCTGGAGCCTGGGACGCTGCTAAGCAGAAGGCCTCCGATGCTAAGGATGCCGTCAAGGATGCTGTCAATGAGTTGTAAACAGTAACAACGAAATTAATTGTCCCATAATTGCCACTAATTGCTATATGTCCAATTTTCTTCCAACTTTAAAAAAGTGATGGGTATTTGACTCCACAATATTCAACTTCTCCCTCAAATTCTTTGAATTTTCAACCACTTTTCTTTCTTTCTGTACAATATGGTCTTGACTTTTTTTGATGTAAATAAACTAGATTTCGCAAAATTCTTTAAAAGTAAAAGTGAAATATAAATTAAAAAATGGAAAAATTGAAAATTGACTCATTCAAAAATGTGAGACTAAATCATTGAAAAAGGTTTACAAGGGAGTTACTTGAGGGAGCAGTTTTAACTTTTTTTTAAATTTTGGGAGCAGATAGAAGAGCTTATGTGGATTCCAAATCTGTTAAAAAATCAGCAAAATGCTCTCGTGAGCTGAGTTATGACCTAGAAAAGTTTCCCTATGATTAAGCAATTTCTCGTGAAATTTTTTTCACGGAATAGTGTATTTCTTTTAAAACAATAGA</canonical>
            <polymorphic>CAAATCGGCGACACTGTCTCTGGAGCCTATCAGGCTACTAAAGAAAAGGTTTCTGGAATGTTCGGAGATGCCAAGGAAGAGGCTGAGGTGAAAAAGGAAGAGGCTAAGGTGAGATTCAACACTAGAACCCACATAGGAAAAATATAAAATTCCAGATCAAGGCTGGAAATGCCAAGGACGCTGTGAAGGACAAGGCTGCTGAGACCATGGACAAGGCCAACGACGCCTATGAGAACGCCAAGGCTAACGTTCAAAAGAGATCTTCCGAGGGATACCATGAGGCCAAGAGCAAGACTTCTGATACCATTGAATCTGCCAAGGACAAGGCCGGACAAGCCAAAGACGCCGCTGGAAACGCCGCTGGAAACGCCAAGGACAAGGCCGCCGGAGCTTACGACTCCGCCAAGGACAAGGCTTCTGGAGCCTGGGACGCTGCTAAGCAGAAGGCCTCCGATGCTAAGGATGCCGTCAAGGATGCTGTCAATGAGTTGTAAACAGTWACAACGAAATTAATTGTCCCATAATTGCCACTAATTGCTATATGTCCAATTTTCTTCCAACTTTAAAAAAGTGATGGGTATTTGACTCCACAATATTCAACTTCTCCCTCAAATTCTTTGAATTTTCAACCACTTTTCTTTCTTTCTGTACAATATGGTCTTGACTTTTTTTGATGTAAATAAACTAGATTTCGCAAAATTCTTTAAAAGTAAAAGTGAAATATAAATTAAAAAATGGAAAAATTGAAAATTGACTCATTCAAAAATGTGAGACTAAATCATTGAAAAAGGTTTACAAGGGAGTTACTTGAGGGAGCAGTTTTAACTTTTTTTTAAATTTTGGGAGCAGATAGAAGAGCTTATGTGGATTCCAAATCTGTTAAAAAATCAGCAAAATGCTCTCGTGAGCTGAGTTATGACCTAGAAAAGTTTCCCTATGATTAAGCAATTTCTCGTGAAATTTTTTTCACGGAATAGTGTATTTCTTTTAAAACAATAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGACTTCTGATACCATTGAA</pcr_primer_p1>
		<pcr_primer_p2>TTGGAAGAAAATTGGACATATAG</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>CAAGACTTCTGATACCATTGAATCTGCCAAGGACAAGGCCGGACAAGCCAAAGACGCCGCTGGAAACGCCGCTGGAAACGCCAAGGACAAGGCCGCCGGAGCTTACGACTCCGCCAAGGACAAGGCTTCTGGAGCCTGGGACGCTGCTAAGCAGAAGGCCTCCGATGCTAAGGATGCCGTCAAGGATGCTGTCAATGAGTTGTAAACAGTAACAACGAAATTAATTGTCCCATAATTGCCACTAATTGCTATATGTCCAATTTTCTTCCAA</canonical_amplicon>
		<polymorphic_amplicon>CAAGACTTCTGATACCATTGAATCTGCCAAGGACAAGGCCGGACAAGCCAAAGACGCCGCTGGAAACGCCGCTGGAAACGCCAAGGACAAGGCCGCCGGAGCTTACGACTCCGCCAAGGACAAGGCTTCTGGAGCCTGGGACGCTGCTAAGCAGAAGGCCTCCGATGCTAAGGATGCCGTCAAGGATGCTGTCAATGAGTTGTAAACAGTWACAACGAAATTAATTGTCCCATAATTGCCACTAATTGCTATATGTCCAATTTTCTTCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28068</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>578397</contig_pos>
        <strand></strand>
        <context>TTTTCTGTTC[G/C]CGAAAATCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AAACAACGAGATTTCGAGAAATTCGCCGATATTAACCCTTTTTTCTGTTC</left_flank>
        <right_flank>CGAAAATCATTTTCCTCTCCATTTTCCGACCTCCGAAGTCGGAAAACGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGNNNNNNNNNNAAAATTACAAAAATTAAAAAATTTCGGAAATTTTTAAAATTTTTAAAATTTTAGAACCTCAAAAAATGTACAAAGCCGAGAACTCGGAAAAAAAGGCGGGAATTTCAAAAAATAACTCAAGTTGGCGATTTAAAATTCTTTTTTGTTAACAAAGTTCATTTTTTTCATATTTCCGAATTTTTCTGTTTTTTTTCAAAATTTCGCAAAATATCTAACAACGGAGTTACTTGAGGGAGCAGTATTAACTCTTTATAAAATTTTGGAGCCAGGGTTTCTATATAGGGAGTTTACGGTATGTTTCCTTTGAATTTTATATTATTTTTTTAGACTGATGCAGCCAACTAAGCCATTTTGAAAATTTCGAAAAATTTGCTCTCAAGACACTAAAATTAACTTAATTTCTAAAAATGTTTTGTTTCATACATCTGCTTCAAAAAAACAACGAGATTTCGAGAAATTCGCCGATATTAACCCTTTTTTCTGTTCGCGAAAATCATTTTCCTCTCCATTTTCCGACCTCCGAAGTCGGAAAACGATTTCGGAAAAGAAAACGCCTGGAAAATGGTTTTCCGGAAAACGAACATTTTCTTGCATACCGAAATCGTCATTTTCCGGTAATTCGTTTTTCGGAAAACTGTTTTCCGTCTGTTTTTCACTTTCTTGCATACGGCCTCTGAAATTTGAAATTTAAAAAGTATAGAATTCGGAAATTCGAAAAATTCAATTTTGGATTTTTACGCGATTACAAATCTACCCCTGGAAGTTATATTTGCTATAAGAAGTATTTCCAGTCGCCAAAAAACAGACTCAGCCCTTGAAAAGCAGACCTAAAAACTAGGCTTAGTTAGAAAAAAGTATCCTAGAAGTCAATCAGCGCTTTAAAAGAAGGCTCAGCCCTCAAAAAGTAGCCTCAGTCCTAAAAAAGTAGGCTCAGTCCTTGAAAAGCAGACTGTTGAAAAGCAGAATGTTTCTTCACGCGTTAGTTCC</canonical>
            <polymorphic>AAGNNNNNNNNNNAAAATTACAAAAATTAAAAAATTTCGGAAATTTTTAAAATTTTTAAAATTTTAGAACCTCAAAAAATGTACAAAGCCGAGAACTCGGAAAAAAAGGCGGGAATTTCAAAAAATAACTCAAGTTGGCGATTTAAAATTCTTTTTTGTTAACAAAGTTCATTTTTTTCATATTTCCGAATTTTTCTGTTTTTTTTCAAAATTTCGCAAAATATCTAACAACGGAGTTACTTGAGGGAGCAGTATTAACTCTTTATAAAATTTTGGAGCCAGGGTTTCTATATAGGGAGTTTACGGTATGTTTCCTTTGAATTTTATATTATTTTTTTAGACTGATGCAGCCAACTAAGCCATTTTGAAAATTTCGAAAAATTTGCTCTCAAGACACTAAAATTAACTTAATTTCTAAAAATGTTTTGTTTCATACATCTGCTTCAAAAAAACAACGAGATTTCGAGAAATTCGCCGATATTAACCCTTTTTTCTGTTCSCGAAAATCATTTTCCTCTCCATTTTCCGACCTCCGAAGTCGGAAAACGATTTCGGAAAAGAAAACGCCTGGAAAATGGTTTTCCGGAAAACGAACATTTTCTTGCATACCGAAATCGTCATTTTCCGGTAATTCGTTTTTCGGAAAACTGTTTTCCGTCTGTTTTTCACTTTCTTGCATACGGCCTCTGAAATTTGAAATTTAAAAAGTATAGAATTCGGAAATTCGAAAAATTCAATTTTGGATTTTTACGCGATTACAAATCTACCCCTGGAAGTTATATTTGCTATAAGAAGTATTTCCAGTCGCCAAAAAACAGACTCAGCCCTTGAAAAGCAGACCTAAAAACTAGGCTTAGTTAGAAAAAAGTATCCTAGAAGTCAATCAGCGCTTTAAAAGAAGGCTCAGCCCTCAAAAAGTAGCCTCAGTCCTAAAAAAGTAGGCTCAGTCCTTGAAAAGCAGACTGTTGAAAAGCAGAATGTTTCTTCACGCGTTAGTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 252 238 10</canonical_bands>
                <polymorphic_bands>752 238 10</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGCGA</site>
                <isoschizomers>
                    <enzyme>Bsp68I</enzyme>
                    <enzyme>NruI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGACTGATGCAGCCAACTAA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTCTTTTCCGAAATCGT</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>TAGACTGATGCAGCCAACTAAGCCATTTTGAAAATTTCGAAAAATTTGCTCTCAAGACACTAAAATTAACTTAATTTCTAAAAATGTTTTGTTTCATACATCTGCTTCAAAAAAACAACGAGATTTCGAGAAATTCGCCGATATTAACCCTTTTTTCTGTTCGCGAAAATCATTTTCCTCTCCATTTTCCGACCTCCGAAGTCGGAAAACGATTTCGGAAAAGAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TAGACTGATGCAGCCAACTAAGCCATTTTGAAAATTTCGAAAAATTTGCTCTCAAGACACTAAAATTAACTTAATTTCTAAAAATGTTTTGTTTCATACATCTGCTTCAAAAAAACAACGAGATTTCGAGAAATTCGCCGATATTAACCCTTTTTTCTGTTCSCGAAAATCATTTTCCTCTCCATTTTCCGACCTCCGAAGTCGGAAAACGATTTCGGAAAAGAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28069</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>578464</contig_pos>
        <strand></strand>
        <context>AAAGAAAACG[C/T]YTGGAAAATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCCATTTTCCGACCTCCGAAGTCGGAAAACGATTTCGGAAAAGAAAACG</left_flank>
        <right_flank>CTGGAAAATGGTTTTCCGGAAAACGAACATTTTCTTGCATACCGAAATCG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCTCAAAAAATGTACAAAGCCGAGAACTCGGAAAAAAAGGCGGGAATTTCAAAAAATAACTCAAGTTGGCGATTTAAAATTCTTTTTTGTTAACAAAGTTCATTTTTTTCATATTTCCGAATTTTTCTGTTTTTTTTCAAAATTTCGCAAAATATCTAACAACGGAGTTACTTGAGGGAGCAGTATTAACTCTTTATAAAATTTTGGAGCCAGGGTTTCTATATAGGGAGTTTACGGTATGTTTCCTTTGAATTTTATATTATTTTTTTAGACTGATGCAGCCAACTAAGCCATTTTGAAAATTTCGAAAAATTTGCTCTCAAGACACTAAAATTAACTTAATTTCTAAAAATGTTTTGTTTCATACATCTGCTTCAAAAAAACAACGAGATTTCGAGAAATTCGCCGATATTAACCCTTTTTTCTGTTCGCGAAAATCATTTTCCTCTCCATTTTCCGACCTCCGAAGTCGGAAAACGATTTCGGAAAAGAAAACGCCTGGAAAATGGTTTTCCGGAAAACGAACATTTTCTTGCATACCGAAATCGTCATTTTCCGGTAATTCGTTTTTCGGAAAACTGTTTTCCGTCTGTTTTTCACTTTCTTGCATACGGCCTCTGAAATTTGAAATTTAAAAAGTATAGAATTCGGAAATTCGAAAAATTCAATTTTGGATTTTTACGCGATTACAAATCTACCCCTGGAAGTTATATTTGCTATAAGAAGTATTTCCAGTCGCCAAAAAACAGACTCAGCCCTTGAAAAGCAGACCTAAAAACTAGGCTTAGTTAGAAAAAAGTATCCTAGAAGTCAATCAGCGCTTTAAAAGAAGGCTCAGCCCTCAAAAAGTAGCCTCAGTCCTAAAAAAGTAGGCTCAGTCCTTGAAAAGCAGACTGTTGAAAAGCAGAATGTTTCTTCACGCGTTAGTTCCTCAAAAGTGTTTTTTTTCGTCTTCAAAAAAACTTGAATATATAATAATCGTCTGATAGTATAATTCA</canonical>
            <polymorphic>AACCTCAAAAAATGTACAAAGCCGAGAACTCGGAAAAAAAGGCGGGAATTTCAAAAAATAACTCAAGTTGGCGATTTAAAATTCTTTTTTGTTAACAAAGTTCATTTTTTTCATATTTCCGAATTTTTCTGTTTTTTTTCAAAATTTCGCAAAATATCTAACAACGGAGTTACTTGAGGGAGCAGTATTAACTCTTTATAAAATTTTGGAGCCAGGGTTTCTATATAGGGAGTTTACGGTATGTTTCCTTTGAATTTTATATTATTTTTTTAGACTGATGCAGCCAACTAAGCCATTTTGAAAATTTCGAAAAATTTGCTCTCAAGACACTAAAATTAACTTAATTTCTAAAAATGTTTTGTTTCATACATCTGCTTCAAAAAAACAACGAGATTTCGAGAAATTCGCCGATATTAACCCTTTTTTCTGTTCGCGAAAATCATTTTCCTCTCCATTTTCCGACCTCCGAAGTCGGAAAACGATTTCGGAAAAGAAAACGYCTGGAAAATGGTTTTCCGGAAAACGAACATTTTCTTGCATACCGAAATCGTCATTTTCCGGTAATTCGTTTTTCGGAAAACTGTTTTCCGTCTGTTTTTCACTTTCTTGCATACGGCCTCTGAAATTTGAAATTTAAAAAGTATAGAATTCGGAAATTCGAAAAATTCAATTTTGGATTTTTACGCGATTACAAATCTACCCCTGGAAGTTATATTTGCTATAAGAAGTATTTCCAGTCGCCAAAAAACAGACTCAGCCCTTGAAAAGCAGACCTAAAAACTAGGCTTAGTTAGAAAAAAGTATCCTAGAAGTCAATCAGCGCTTTAAAAGAAGGCTCAGCCCTCAAAAAGTAGCCTCAGTCCTAAAAAAGTAGGCTCAGTCCTTGAAAAGCAGACTGTTGAAAAGCAGAATGTTTCTTCACGCGTTAGTTCCTCAAAAGTGTTTTTTTTCGTCTTCAAAAAAACTTGAATATATAATAATCGTCTGATAGTATAATTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>297 288 213 202</canonical_bands>
                <polymorphic_bands>490 297 213</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>297 288 213 202</canonical_bands>
                <polymorphic_bands>490 297 213</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCATTTTCCTCTCCATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCGAATTTCCGAATTCTATACT</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>AAATCATTTTCCTCTCCATTTTCCGACCTCCGAAGTCGGAAAACGATTTCGGAAAAGAAAACGCCTGGAAAATGGTTTTCCGGAAAACGAACATTTTCTTGCATACCGAAATCGTCATTTTCCGGTAATTCGTTTTTCGGAAAACTGTTTTCCGTCTGTTTTTCACTTTCTTGCATACGGCCTCTGAAATTTGAAATTTAAAAAGTATAGAATTCGGAAATTCGAA</canonical_amplicon>
		<polymorphic_amplicon>AAATCATTTTCCTCTCCATTTTCCGACCTCCGAAGTCGGAAAACGATTTCGGAAAAGAAAACGYCTGGAAAATGGTTTTCCGGAAAACGAACATTTTCTTGCATACCGAAATCGTCATTTTCCGGTAATTCGTTTTTCGGAAAACTGTTTTCCGTCTGTTTTTCACTTTCTTGCATACGGCCTCTGAAATTTGAAATTTAAAAAGTATAGAATTCGGAAATTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28070</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>578465</contig_pos>
        <strand></strand>
        <context>AAGAAAACGY[C/T]TGGAAAATGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCATTTTCCGACCTCCGAAGTCGGAAAACGATTTCGGAAAAGAAAACGC</left_flank>
        <right_flank>TGGAAAATGGTTTTCCGGAAAACGAACATTTTCTTGCATACCGAAATCGT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTCAAAAAATGTACAAAGCCGAGAACTCGGAAAAAAAGGCGGGAATTTCAAAAAATAACTCAAGTTGGCGATTTAAAATTCTTTTTTGTTAACAAAGTTCATTTTTTTCATATTTCCGAATTTTTCTGTTTTTTTTCAAAATTTCGCAAAATATCTAACAACGGAGTTACTTGAGGGAGCAGTATTAACTCTTTATAAAATTTTGGAGCCAGGGTTTCTATATAGGGAGTTTACGGTATGTTTCCTTTGAATTTTATATTATTTTTTTAGACTGATGCAGCCAACTAAGCCATTTTGAAAATTTCGAAAAATTTGCTCTCAAGACACTAAAATTAACTTAATTTCTAAAAATGTTTTGTTTCATACATCTGCTTCAAAAAAACAACGAGATTTCGAGAAATTCGCCGATATTAACCCTTTTTTCTGTTCGCGAAAATCATTTTCCTCTCCATTTTCCGACCTCCGAAGTCGGAAAACGATTTCGGAAAAGAAAACGCCTGGAAAATGGTTTTCCGGAAAACGAACATTTTCTTGCATACCGAAATCGTCATTTTCCGGTAATTCGTTTTTCGGAAAACTGTTTTCCGTCTGTTTTTCACTTTCTTGCATACGGCCTCTGAAATTTGAAATTTAAAAAGTATAGAATTCGGAAATTCGAAAAATTCAATTTTGGATTTTTACGCGATTACAAATCTACCCCTGGAAGTTATATTTGCTATAAGAAGTATTTCCAGTCGCCAAAAAACAGACTCAGCCCTTGAAAAGCAGACCTAAAAACTAGGCTTAGTTAGAAAAAAGTATCCTAGAAGTCAATCAGCGCTTTAAAAGAAGGCTCAGCCCTCAAAAAGTAGCCTCAGTCCTAAAAAAGTAGGCTCAGTCCTTGAAAAGCAGACTGTTGAAAAGCAGAATGTTTCTTCACGCGTTAGTTCCTCAAAAGTGTTTTTTTTCGTCTTCAAAAAAACTTGAATATATAATAATCGTCTGATAGTATAATTCAC</canonical>
            <polymorphic>ACCTCAAAAAATGTACAAAGCCGAGAACTCGGAAAAAAAGGCGGGAATTTCAAAAAATAACTCAAGTTGGCGATTTAAAATTCTTTTTTGTTAACAAAGTTCATTTTTTTCATATTTCCGAATTTTTCTGTTTTTTTTCAAAATTTCGCAAAATATCTAACAACGGAGTTACTTGAGGGAGCAGTATTAACTCTTTATAAAATTTTGGAGCCAGGGTTTCTATATAGGGAGTTTACGGTATGTTTCCTTTGAATTTTATATTATTTTTTTAGACTGATGCAGCCAACTAAGCCATTTTGAAAATTTCGAAAAATTTGCTCTCAAGACACTAAAATTAACTTAATTTCTAAAAATGTTTTGTTTCATACATCTGCTTCAAAAAAACAACGAGATTTCGAGAAATTCGCCGATATTAACCCTTTTTTCTGTTCGCGAAAATCATTTTCCTCTCCATTTTCCGACCTCCGAAGTCGGAAAACGATTTCGGAAAAGAAAACGCYTGGAAAATGGTTTTCCGGAAAACGAACATTTTCTTGCATACCGAAATCGTCATTTTCCGGTAATTCGTTTTTCGGAAAACTGTTTTCCGTCTGTTTTTCACTTTCTTGCATACGGCCTCTGAAATTTGAAATTTAAAAAGTATAGAATTCGGAAATTCGAAAAATTCAATTTTGGATTTTTACGCGATTACAAATCTACCCCTGGAAGTTATATTTGCTATAAGAAGTATTTCCAGTCGCCAAAAAACAGACTCAGCCCTTGAAAAGCAGACCTAAAAACTAGGCTTAGTTAGAAAAAAGTATCCTAGAAGTCAATCAGCGCTTTAAAAGAAGGCTCAGCCCTCAAAAAGTAGCCTCAGTCCTAAAAAAGTAGGCTCAGTCCTTGAAAAGCAGACTGTTGAAAAGCAGAATGTTTCTTCACGCGTTAGTTCCTCAAAAGTGTTTTTTTTCGTCTTCAAAAAAACTTGAATATATAATAATCGTCTGATAGTATAATTCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>298 288 212 202</canonical_bands>
                <polymorphic_bands>490 298 212</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>298 288 212 202</canonical_bands>
                <polymorphic_bands>490 298 212</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCATTTTCCTCTCCATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCGAATTTCCGAATTCTATACT</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>AAATCATTTTCCTCTCCATTTTCCGACCTCCGAAGTCGGAAAACGATTTCGGAAAAGAAAACGCCTGGAAAATGGTTTTCCGGAAAACGAACATTTTCTTGCATACCGAAATCGTCATTTTCCGGTAATTCGTTTTTCGGAAAACTGTTTTCCGTCTGTTTTTCACTTTCTTGCATACGGCCTCTGAAATTTGAAATTTAAAAAGTATAGAATTCGGAAATTCGAA</canonical_amplicon>
		<polymorphic_amplicon>AAATCATTTTCCTCTCCATTTTCCGACCTCCGAAGTCGGAAAACGATTTCGGAAAAGAAAACGCYTGGAAAATGGTTTTCCGGAAAACGAACATTTTCTTGCATACCGAAATCGTCATTTTCCGGTAATTCGTTTTTCGGAAAACTGTTTTCCGTCTGTTTTTCACTTTCTTGCATACGGCCTCTGAAATTTGAAATTTAAAAAGTATAGAATTCGGAAATTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28071</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>578639</contig_pos>
        <strand></strand>
        <context>ATTCAATTTT[G/C]GATTTTTACG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>ATTTGAAATTTAAAAAGTATAGAATTCGGAAATTCGAAAAATTCAATTTT</left_flank>
        <right_flank>GATTTTTACGCGATTACAAATCTACCCCTGGAAGTTATATTTGCTATAAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGGAGCAGTATTAACTCTTTATAAAATTTTGGAGCCAGGGTTTCTATATAGGGAGTTTACGGTATGTTTCCTTTGAATTTTATATTATTTTTTTAGACTGATGCAGCCAACTAAGCCATTTTGAAAATTTCGAAAAATTTGCTCTCAAGACACTAAAATTAACTTAATTTCTAAAAATGTTTTGTTTCATACATCTGCTTCAAAAAAACAACGAGATTTCGAGAAATTCGCCGATATTAACCCTTTTTTCTGTTCGCGAAAATCATTTTCCTCTCCATTTTCCGACCTCCGAAGTCGGAAAACGATTTCGGAAAAGAAAACGCCTGGAAAATGGTTTTCCGGAAAACGAACATTTTCTTGCATACCGAAATCGTCATTTTCCGGTAATTCGTTTTTCGGAAAACTGTTTTCCGTCTGTTTTTCACTTTCTTGCATACGGCCTCTGAAATTTGAAATTTAAAAAGTATAGAATTCGGAAATTCGAAAAATTCAATTTTGGATTTTTACGCGATTACAAATCTACCCCTGGAAGTTATATTTGCTATAAGAAGTATTTCCAGTCGCCAAAAAACAGACTCAGCCCTTGAAAAGCAGACCTAAAAACTAGGCTTAGTTAGAAAAAAGTATCCTAGAAGTCAATCAGCGCTTTAAAAGAAGGCTCAGCCCTCAAAAAGTAGCCTCAGTCCTAAAAAAGTAGGCTCAGTCCTTGAAAAGCAGACTGTTGAAAAGCAGAATGTTTCTTCACGCGTTAGTTCCTCAAAAGTGTTTTTTTTCGTCTTCAAAAAAACTTGAATATATAATAATCGTCTGATAGTATAATTCACGTAGCCCTGACTAATAAAGTGGGTAAAGCAGTTGAATCCCAATCTCAGCATCCAGGGTTCAATTCCACTCGGAAGCAAATGTCTTTTGAAAACAATATTCTGGTCTCAAAAAAATTCTAGAAAAAAGAACCAAAAAAAAATAAAGCAAATGAACCCTCTTGTATAAATACGAGT</canonical>
            <polymorphic>GAGGGAGCAGTATTAACTCTTTATAAAATTTTGGAGCCAGGGTTTCTATATAGGGAGTTTACGGTATGTTTCCTTTGAATTTTATATTATTTTTTTAGACTGATGCAGCCAACTAAGCCATTTTGAAAATTTCGAAAAATTTGCTCTCAAGACACTAAAATTAACTTAATTTCTAAAAATGTTTTGTTTCATACATCTGCTTCAAAAAAACAACGAGATTTCGAGAAATTCGCCGATATTAACCCTTTTTTCTGTTCGCGAAAATCATTTTCCTCTCCATTTTCCGACCTCCGAAGTCGGAAAACGATTTCGGAAAAGAAAACGCCTGGAAAATGGTTTTCCGGAAAACGAACATTTTCTTGCATACCGAAATCGTCATTTTCCGGTAATTCGTTTTTCGGAAAACTGTTTTCCGTCTGTTTTTCACTTTCTTGCATACGGCCTCTGAAATTTGAAATTTAAAAAGTATAGAATTCGGAAATTCGAAAAATTCAATTTTSGATTTTTACGCGATTACAAATCTACCCCTGGAAGTTATATTTGCTATAAGAAGTATTTCCAGTCGCCAAAAAACAGACTCAGCCCTTGAAAAGCAGACCTAAAAACTAGGCTTAGTTAGAAAAAAGTATCCTAGAAGTCAATCAGCGCTTTAAAAGAAGGCTCAGCCCTCAAAAAGTAGCCTCAGTCCTAAAAAAGTAGGCTCAGTCCTTGAAAAGCAGACTGTTGAAAAGCAGAATGTTTCTTCACGCGTTAGTTCCTCAAAAGTGTTTTTTTTCGTCTTCAAAAAAACTTGAATATATAATAATCGTCTGATAGTATAATTCACGTAGCCCTGACTAATAAAGTGGGTAAAGCAGTTGAATCCCAATCTCAGCATCCAGGGTTCAATTCCACTCGGAAGCAAATGTCTTTTGAAAACAATATTCTGGTCTCAAAAAAATTCTAGAAAAAAGAACCAAAAAAAAATAAAGCAAATGAACCCTCTTGTATAAATACGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGATTTCGGAAAAGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CGACTGGAAATACTTCTTATAGC</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>ACGATTTCGGAAAAGAAAACGCCTGGAAAATGGTTTTCCGGAAAACGAACATTTTCTTGCATACCGAAATCGTCATTTTCCGGTAATTCGTTTTTCGGAAAACTGTTTTCCGTCTGTTTTTCACTTTCTTGCATACGGCCTCTGAAATTTGAAATTTAAAAAGTATAGAATTCGGAAATTCGAAAAATTCAATTTTGGATTTTTACGCGATTACAAATCTACCCCTGGAAGTTATATTTGCTATAAGAAGTATTTCCAGTCG</canonical_amplicon>
		<polymorphic_amplicon>ACGATTTCGGAAAAGAAAACGCCTGGAAAATGGTTTTCCGGAAAACGAACATTTTCTTGCATACCGAAATCGTCATTTTCCGGTAATTCGTTTTTCGGAAAACTGTTTTCCGTCTGTTTTTCACTTTCTTGCATACGGCCTCTGAAATTTGAAATTTAAAAAGTATAGAATTCGGAAATTCGAAAAATTCAATTTTSGATTTTTACGCGATTACAAATCTACCCCTGGAAGTTATATTTGCTATAAGAAGTATTTCCAGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28072</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>578664</contig_pos>
        <strand></strand>
        <context>TACAAATCTA[C/T]CCCTGGAAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGGAAATTCGAAAAATTCAATTTTGGATTTTTACGCGATTACAAATCTA</left_flank>
        <right_flank>CCCTGGAAGTTATATTTGCTATAAGAAGTATTTCCAGTCGCCAAAAAACA</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTTGGAGCCAGGGTTTCTATATAGGGAGTTTACGGTATGTTTCCTTTGAATTTTATATTATTTTTTTAGACTGATGCAGCCAACTAAGCCATTTTGAAAATTTCGAAAAATTTGCTCTCAAGACACTAAAATTAACTTAATTTCTAAAAATGTTTTGTTTCATACATCTGCTTCAAAAAAACAACGAGATTTCGAGAAATTCGCCGATATTAACCCTTTTTTCTGTTCGCGAAAATCATTTTCCTCTCCATTTTCCGACCTCCGAAGTCGGAAAACGATTTCGGAAAAGAAAACGCCTGGAAAATGGTTTTCCGGAAAACGAACATTTTCTTGCATACCGAAATCGTCATTTTCCGGTAATTCGTTTTTCGGAAAACTGTTTTCCGTCTGTTTTTCACTTTCTTGCATACGGCCTCTGAAATTTGAAATTTAAAAAGTATAGAATTCGGAAATTCGAAAAATTCAATTTTGGATTTTTACGCGATTACAAATCTACCCCTGGAAGTTATATTTGCTATAAGAAGTATTTCCAGTCGCCAAAAAACAGACTCAGCCCTTGAAAAGCAGACCTAAAAACTAGGCTTAGTTAGAAAAAAGTATCCTAGAAGTCAATCAGCGCTTTAAAAGAAGGCTCAGCCCTCAAAAAGTAGCCTCAGTCCTAAAAAAGTAGGCTCAGTCCTTGAAAAGCAGACTGTTGAAAAGCAGAATGTTTCTTCACGCGTTAGTTCCTCAAAAGTGTTTTTTTTCGTCTTCAAAAAAACTTGAATATATAATAATCGTCTGATAGTATAATTCACGTAGCCCTGACTAATAAAGTGGGTAAAGCAGTTGAATCCCAATCTCAGCATCCAGGGTTCAATTCCACTCGGAAGCAAATGTCTTTTGAAAACAATATTCTGGTCTCAAAAAAATTCTAGAAAAAAGAACCAAAAAAAAATAAAGCAAATGAACCCTCTTGTATAAATACGAGTGCGTAGAATAAAGACAATTCAATTC</canonical>
            <polymorphic>AAATTTTGGAGCCAGGGTTTCTATATAGGGAGTTTACGGTATGTTTCCTTTGAATTTTATATTATTTTTTTAGACTGATGCAGCCAACTAAGCCATTTTGAAAATTTCGAAAAATTTGCTCTCAAGACACTAAAATTAACTTAATTTCTAAAAATGTTTTGTTTCATACATCTGCTTCAAAAAAACAACGAGATTTCGAGAAATTCGCCGATATTAACCCTTTTTTCTGTTCGCGAAAATCATTTTCCTCTCCATTTTCCGACCTCCGAAGTCGGAAAACGATTTCGGAAAAGAAAACGCCTGGAAAATGGTTTTCCGGAAAACGAACATTTTCTTGCATACCGAAATCGTCATTTTCCGGTAATTCGTTTTTCGGAAAACTGTTTTCCGTCTGTTTTTCACTTTCTTGCATACGGCCTCTGAAATTTGAAATTTAAAAAGTATAGAATTCGGAAATTCGAAAAATTCAATTTTGGATTTTTACGCGATTACAAATCTAYCCCTGGAAGTTATATTTGCTATAAGAAGTATTTCCAGTCGCCAAAAAACAGACTCAGCCCTTGAAAAGCAGACCTAAAAACTAGGCTTAGTTAGAAAAAAGTATCCTAGAAGTCAATCAGCGCTTTAAAAGAAGGCTCAGCCCTCAAAAAGTAGCCTCAGTCCTAAAAAAGTAGGCTCAGTCCTTGAAAAGCAGACTGTTGAAAAGCAGAATGTTTCTTCACGCGTTAGTTCCTCAAAAGTGTTTTTTTTCGTCTTCAAAAAAACTTGAATATATAATAATCGTCTGATAGTATAATTCACGTAGCCCTGACTAATAAAGTGGGTAAAGCAGTTGAATCCCAATCTCAGCATCCAGGGTTCAATTCCACTCGGAAGCAAATGTCTTTTGAAAACAATATTCTGGTCTCAAAAAAATTCTAGAAAAAAGAACCAAAAAAAAATAAAGCAAATGAACCCTCTTGTATAAATACGAGTGCGTAGAATAAAGACAATTCAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCGGAAATTCGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTCTGCTTTTCAAGGACTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTCGGAAATTCGAAAAATTCAATTTTGGATTTTTACGCGATTACAAATCTACCCCTGGAAGTTATATTTGCTATAAGAAGTATTTCCAGTCGCCAAAAAACAGACTCAGCCCTTGAAAAGCAGACCTAAAAACTAGGCTTAGTTAGAAAAAAGTATCCTAGAAGTCAATCAGCGCTTTAAAAGAAGGCTCAGCCCTCAAAAAGTAGCCTCAGTCCTAAAAAAGTAGGCTCAGTCCTTGAAAAGCAGAC</canonical_amplicon>
		<polymorphic_amplicon>AATTCGGAAATTCGAAAAATTCAATTTTGGATTTTTACGCGATTACAAATCTAYCCCTGGAAGTTATATTTGCTATAAGAAGTATTTCCAGTCGCCAAAAAACAGACTCAGCCCTTGAAAAGCAGACCTAAAAACTAGGCTTAGTTAGAAAAAAGTATCCTAGAAGTCAATCAGCGCTTTAAAAGAAGGCTCAGCCCTCAAAAAGTAGCCTCAGTCCTAAAAAAGTAGGCTCAGTCCTTGAAAAGCAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28073</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>606002</contig_pos>
        <strand></strand>
        <context>aaattggtca[G/A]ataaaaaaat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCA</left_flank>
        <right_flank>ATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAGGAAAACTAATTTTTAAAGTACTCTATTTTTTGCAGACATCTTTTATGCAAAAGATAAAAATGAAAAACACAGCAACGCACGTCTGTGCTATAAATAAAGACAAAACCCTGCGTCTCTTGGCCGTTCGCATAGTTAGAGAGAGTGTGGAAATTGCTAGAACCCGTCGGATTGTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCCGTTTGTCTGATTTTTTTTTCGATTTTCGATATTTTTCAAATTAAATTTTTTCCAGAAAATGAGTGTCATCAATAAAATCGAGGACAACCTCAGCAGTGCCTACGTCGAACACAAGCTCGACCCAATCGAGAAGTCCCATCAACACGCTCCAGAAGTTCACGCAACTGGCGAGGACTACCATAGAGGAAGCCGCC</canonical>
            <polymorphic>TCAAGGAAAACTAATTTTTAAAGTACTCTATTTTTTGCAGACATCTTTTATGCAAAAGATAAAAATGAAAAACACAGCAACGCACGTCTGTGCTATAAATAAAGACAAAACCCTGCGTCTCTTGGCCGTTCGCATAGTTAGAGAGAGTGTGGAAATTGCTAGAACCCGTCGGATTGTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCARATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCCGTTTGTCTGATTTTTTTTTCGATTTTCGATATTTTTCAAATTAAATTTTTTCCAGAAAATGAGTGTCATCAATAAAATCGAGGACAACCTCAGCAGTGCCTACGTCGAACACAAGCTCGACCCAATCGAGAAGTCCCATCAACACGCTCCAGAAGTTCACGCAACTGGCGAGGACTACCATAGAGGAAGCCGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>328 218 186 171 97</canonical_bands>
                <polymorphic_bands>425 218 186 171</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGATCTACCCAATTTGAA</pcr_primer_p1>
		<pcr_primer_p2>GGCACTATAAGAATAGCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>400</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCARATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28074</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>606064</contig_pos>
        <strand></strand>
        <context>tttgatatct[C/T]tcacagkaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCT</left_flank>
        <right_flank>TCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTAC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGAAAAACACAGCAACGCACGTCTGTGCTATAAATAAAGACAAAACCCTGCGTCTCTTGGCCGTTCGCATAGTTAGAGAGAGTGTGGAAATTGCTAGAACCCGTCGGATTGTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCCGTTTGTCTGATTTTTTTTTCGATTTTCGATATTTTTCAAATTAAATTTTTTCCAGAAAATGAGTGTCATCAATAAAATCGAGGACAACCTCAGCAGTGCCTACGTCGAACACAAGCTCGACCCAATCGAGAAGTCCCATCAACACGCTCCAGAAGTTCACGCAACTGGCGAGGACTACCATAGAGGAAGCCGCCTTTCCGATGCGTTCGTTTCGCTGAACAATGCCATTCATGGAGATACCACTCATAAGACTGGA</canonical>
            <polymorphic>AAATGAAAAACACAGCAACGCACGTCTGTGCTATAAATAAAGACAAAACCCTGCGTCTCTTGGCCGTTCGCATAGTTAGAGAGAGTGTGGAAATTGCTAGAACCCGTCGGATTGTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTYTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCCGTTTGTCTGATTTTTTTTTCGATTTTCGATATTTTTCAAATTAAATTTTTTCCAGAAAATGAGTGTCATCAATAAAATCGAGGACAACCTCAGCAGTGCCTACGTCGAACACAAGCTCGACCCAATCGAGAAGTCCCATCAACACGCTCCAGAAGTTCACGCAACTGGCGAGGACTACCATAGAGGAAGCCGCCTTTCCGATGCGTTCGTTTCGCTGAACAATGCCATTCATGGAGATACCACTCATAAGACTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGATCTACCCAATTTGAA</pcr_primer_p1>
		<pcr_primer_p2>GGCACTATAAGAATAGCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>400</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTYTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28075</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>606071</contig_pos>
        <strand></strand>
        <context>tctytcacag[G/T]aaatgagata</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAG</left_flank>
        <right_flank>AAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACACAGCAACGCACGTCTGTGCTATAAATAAAGACAAAACCCTGCGTCTCTTGGCCGTTCGCATAGTTAGAGAGAGTGTGGAAATTGCTAGAACCCGTCGGATTGTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCCGTTTGTCTGATTTTTTTTTCGATTTTCGATATTTTTCAAATTAAATTTTTTCCAGAAAATGAGTGTCATCAATAAAATCGAGGACAACCTCAGCAGTGCCTACGTCGAACACAAGCTCGACCCAATCGAGAAGTCCCATCAACACGCTCCAGAAGTTCACGCAACTGGCGAGGACTACCATAGAGGAAGCCGCCTTTCCGATGCGTTCGTTTCGCTGAACAATGCCATTCATGGAGATACCACTCATAAGACTGGAGAAGCAT</canonical>
            <polymorphic>AAACACAGCAACGCACGTCTGTGCTATAAATAAAGACAAAACCCTGCGTCTCTTGGCCGTTCGCATAGTTAGAGAGAGTGTGGAAATTGCTAGAACCCGTCGGATTGTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGKAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCCGTTTGTCTGATTTTTTTTTCGATTTTCGATATTTTTCAAATTAAATTTTTTCCAGAAAATGAGTGTCATCAATAAAATCGAGGACAACCTCAGCAGTGCCTACGTCGAACACAAGCTCGACCCAATCGAGAAGTCCCATCAACACGCTCCAGAAGTTCACGCAACTGGCGAGGACTACCATAGAGGAAGCCGCCTTTCCGATGCGTTCGTTTCGCTGAACAATGCCATTCATGGAGATACCACTCATAAGACTGGAGAAGCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGATCTACCCAATTTGAA</pcr_primer_p1>
		<pcr_primer_p2>GGCACTATAAGAATAGCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>400</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGKAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28076</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>606126</contig_pos>
        <strand></strand>
        <context>TGCTCCaata[A/G]aagccarccc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATA</left_flank>
        <right_flank>AAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCGTTCGCATAGTTAGAGAGAGTGTGGAAATTGCTAGAACCCGTCGGATTGTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCCGTTTGTCTGATTTTTTTTTCGATTTTCGATATTTTTCAAATTAAATTTTTTCCAGAAAATGAGTGTCATCAATAAAATCGAGGACAACCTCAGCAGTGCCTACGTCGAACACAAGCTCGACCCAATCGAGAAGTCCCATCAACACGCTCCAGAAGTTCACGCAACTGGCGAGGACTACCATAGAGGAAGCCGCCTTTCCGATGCGTTCGTTTCGCTGAACAATGCCATTCATGGAGATACCACTCATAAGACTGGAGAAGCATTCAATGATGCCAATGAGTATGATGGTATGGAAAGAAAAATGTCAATGAGCAAGGA</canonical>
            <polymorphic>GCCGTTCGCATAGTTAGAGAGAGTGTGGAAATTGCTAGAACCCGTCGGATTGTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATARAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCCGTTTGTCTGATTTTTTTTTCGATTTTCGATATTTTTCAAATTAAATTTTTTCCAGAAAATGAGTGTCATCAATAAAATCGAGGACAACCTCAGCAGTGCCTACGTCGAACACAAGCTCGACCCAATCGAGAAGTCCCATCAACACGCTCCAGAAGTTCACGCAACTGGCGAGGACTACCATAGAGGAAGCCGCCTTTCCGATGCGTTCGTTTCGCTGAACAATGCCATTCATGGAGATACCACTCATAAGACTGGAGAAGCATTCAATGATGCCAATGAGTATGATGGTATGGAAAGAAAAATGTCAATGAGCAAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGATCTACCCAATTTGAA</pcr_primer_p1>
		<pcr_primer_p2>GGCACTATAAGAATAGCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>400</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATARAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28077</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>606133</contig_pos>
        <strand></strand>
        <context>ataraagcca[A/G]ccctayacgt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCA</left_flank>
        <right_flank>CCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATAGTTAGAGAGAGTGTGGAAATTGCTAGAACCCGTCGGATTGTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCCGTTTGTCTGATTTTTTTTTCGATTTTCGATATTTTTCAAATTAAATTTTTTCCAGAAAATGAGTGTCATCAATAAAATCGAGGACAACCTCAGCAGTGCCTACGTCGAACACAAGCTCGACCCAATCGAGAAGTCCCATCAACACGCTCCAGAAGTTCACGCAACTGGCGAGGACTACCATAGAGGAAGCCGCCTTTCCGATGCGTTCGTTTCGCTGAACAATGCCATTCATGGAGATACCACTCATAAGACTGGAGAAGCATTCAATGATGCCAATGAGTATGATGGTATGGAAAGAAAAATGTCAATGAGCAAGGAAACGGTA</canonical>
            <polymorphic>GCATAGTTAGAGAGAGTGTGGAAATTGCTAGAACCCGTCGGATTGTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCARCCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCCGTTTGTCTGATTTTTTTTTCGATTTTCGATATTTTTCAAATTAAATTTTTTCCAGAAAATGAGTGTCATCAATAAAATCGAGGACAACCTCAGCAGTGCCTACGTCGAACACAAGCTCGACCCAATCGAGAAGTCCCATCAACACGCTCCAGAAGTTCACGCAACTGGCGAGGACTACCATAGAGGAAGCCGCCTTTCCGATGCGTTCGTTTCGCTGAACAATGCCATTCATGGAGATACCACTCATAAGACTGGAGAAGCATTCAATGATGCCAATGAGTATGATGGTATGGAAAGAAAAATGTCAATGAGCAAGGAAACGGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGATCTACCCAATTTGAA</pcr_primer_p1>
		<pcr_primer_p2>GGCACTATAAGAATAGCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>400</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCARCCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28078</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>606139</contig_pos>
        <strand></strand>
        <context>gccarcccta[T/C]acgtgcactt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTA</left_flank>
        <right_flank>ACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAGAGAGAGTGTGGAAATTGCTAGAACCCGTCGGATTGTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCCGTTTGTCTGATTTTTTTTTCGATTTTCGATATTTTTCAAATTAAATTTTTTCCAGAAAATGAGTGTCATCAATAAAATCGAGGACAACCTCAGCAGTGCCTACGTCGAACACAAGCTCGACCCAATCGAGAAGTCCCATCAACACGCTCCAGAAGTTCACGCAACTGGCGAGGACTACCATAGAGGAAGCCGCCTTTCCGATGCGTTCGTTTCGCTGAACAATGCCATTCATGGAGATACCACTCATAAGACTGGAGAAGCATTCAATGATGCCAATGAGTATGATGGTATGGAAAGAAAAATGTCAATGAGCAAGGAAACGGTACTAGAA</canonical>
            <polymorphic>TTAGAGAGAGTGTGGAAATTGCTAGAACCCGTCGGATTGTTGACAGTTTTTGCTGAGAATCATGAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTAYACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCCGTTTGTCTGATTTTTTTTTCGATTTTCGATATTTTTCAAATTAAATTTTTTCCAGAAAATGAGTGTCATCAATAAAATCGAGGACAACCTCAGCAGTGCCTACGTCGAACACAAGCTCGACCCAATCGAGAAGTCCCATCAACACGCTCCAGAAGTTCACGCAACTGGCGAGGACTACCATAGAGGAAGCCGCCTTTCCGATGCGTTCGTTTCGCTGAACAATGCCATTCATGGAGATACCACTCATAAGACTGGAGAAGCATTCAATGATGCCAATGAGTATGATGGTATGGAAAGAAAAATGTCAATGAGCAAGGAAACGGTACTAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGATCTACCCAATTTGAA</pcr_primer_p1>
		<pcr_primer_p2>GGCACTATAAGAATAGCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>400</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTAYACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28079</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>606202</contig_pos>
        <strand></strand>
        <context>agcttaatta[A/T]aaagtgtaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTA</left_flank>
        <right_flank>AAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCCGTTTGTCTGATTTTTTTTTCGATTTTCGATATTTTTCAAATTAAATTTTTTCCAGAAAATGAGTGTCATCAATAAAATCGAGGACAACCTCAGCAGTGCCTACGTCGAACACAAGCTCGACCCAATCGAGAAGTCCCATCAACACGCTCCAGAAGTTCACGCAACTGGCGAGGACTACCATAGAGGAAGCCGCCTTTCCGATGCGTTCGTTTCGCTGAACAATGCCATTCATGGAGATACCACTCATAAGACTGGAGAAGCATTCAATGATGCCAATGAGTATGATGGTATGGAAAGAAAAATGTCAATGAGCAAGGAAACGGTACTAGAAATGGTGCACAGTTGTTTCATGAATGCTACTTGATGAATCGGCTTTTTTTTTCGTAAATATACA</canonical>
            <polymorphic>GAGGTGGAAAGTGCAGAAACTTTTGGTATAAAAAAGAGACACGAAGAGAAACAATACACGTTTTTCAGCTAACTAGAAGCTTTTGGAAATTCATTTTTGAGAATTTGGACTTGAAAATTTTTTAACATAGTCTAGACTTATTCATAAATCACCCACGGTGATTTATGAATAAGCTTTACGAATAAGCTTTCATAAATCACCTACTGATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAWAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCCGTTTGTCTGATTTTTTTTTCGATTTTCGATATTTTTCAAATTAAATTTTTTCCAGAAAATGAGTGTCATCAATAAAATCGAGGACAACCTCAGCAGTGCCTACGTCGAACACAAGCTCGACCCAATCGAGAAGTCCCATCAACACGCTCCAGAAGTTCACGCAACTGGCGAGGACTACCATAGAGGAAGCCGCCTTTCCGATGCGTTCGTTTCGCTGAACAATGCCATTCATGGAGATACCACTCATAAGACTGGAGAAGCATTCAATGATGCCAATGAGTATGATGGTATGGAAAGAAAAATGTCAATGAGCAAGGAAACGGTACTAGAAATGGTGCACAGTTGTTTCATGAATGCTACTTGATGAATCGGCTTTTTTTTTCGTAAATATACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>371 353 126 122 24 4</canonical_bands>
                <polymorphic_bands>371 353 126 122 28</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAATTAA</site>
                <isoschizomers>
                    <enzyme>PacI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGATCTACCCAATTTGAA</pcr_primer_p1>
		<pcr_primer_p2>GGCACTATAAGAATAGCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>400</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAAAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGATCTACCCAATTTGAAAATTTGCACCCTGACCCGCAACTTCGAGGCTGTATATCTCAGCTCCTGTGAAAGATATCAAAAATTGGTCAGATAAAAAAATATTTATCATAGTATCACCAATATTTTGTCAGTTTATCACTTTTTGATATCTCTCACAGGAAATGAGATAAATTGGCTCAAAGTTCAGAGTACAATACCGTACTTGCTCCAATAAAAGCCAACCCTATACGTGCACTTTGAGCTCAATTATCTCGGTTCCTATGCAAGATAACAGAAAATAGCTTAATTAWAAAGTGTAATATTTGTGATTTTAAGATAAAAAATGTATTAGTTGACCGGTTTTTGATATCTCTCATGGGAAGCGGGATAAATCCTTTTCGCTATTCTTATAGTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28080</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>608488</contig_pos>
        <strand></strand>
        <context>gtaaaacctg[C/T]aacagaagag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTCAGATAGGTTTCAAAGGGAGAAAAATCAAGGCACCGTAAAACCTG</left_flank>
        <right_flank>AACAGAAGAGCCCACTTACTTATATCTTTGAGACAACATATCTCGGTTCA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTACTTTCTTCAAATTTATTTTTTTTTCTTTCCAGAAAATGAGTTTCATCGATAAAATTGAGGACAACATTAGCAGTGCCTACGTCGAACACAAGCTCGACCCAATCGAGAAATCCCACCAACATGCTCCAGAAGTGCACGCTACTGGCGAGGACTACCACAGAGGAAGTCGTCTTTCCGATGCGTTCGTTTCTCTGAGCAATGCCATTCATGGAGATACCACTCATAAGACTGGAGAAGCATTCAATGATGCCAATGAGGATGATGATATGGAGAGAAAAATGTCAATGAGCAAGGAAATGTGACTGGAAGTGGCACACAGTTGTTTTGGAAGTGCTAGTTAATGAATCGGTTGCTTGTAAATATCATTTGTATAATTATTAATGTAATTGACAGTAATTTGTCACGGAAGTCTGAATAAATTGCCTTGATATAACTCGGTCATAAAATTTCAGATAGGTTTCAAAGGGAGAAAAATCAAGGCACCGTAAAACCTGCAACAGAAGAGCCCACTTACTTATATCTTTGAGACAACATATCTCGGTTCATGTGATCGATATATAAAAGCTTTAAAGTGATGAAATGTTTATCACAATATCACAAACATTTTATCAGTTGGCACGTTCTTGATATCTTGCGTAGAAGCTAGGAAAAATTAGCTCGATCTTGACAGTGTGGGACCCTTCTATTATAGGTTTTACGGTAATAAGTTTGGAAAAAATTGATTGATCTAGTAAAATGCGGAAATTCAATAATGAAGTTTTTTGACTCGTCCACTAGCATGAAAAAATATAGTTTTATCACAAAAAGGGTTTTTTATTCTTAAATTTCCAGAAGAACTACATTTTTTGAAATCTTGAGAATTTGCTGTTTCAGACAAACTCTCTTTTTATTTGAACCGTATTTTCTTCAAACCTATTTTTTGATAATATATTATGAAAGAAATTAACTTCAAATTTATAGCATTTTTGATATTCCAAAAAATCTTCAATCTTCTG</canonical>
            <polymorphic>TTCTACTTTCTTCAAATTTATTTTTTTTTCTTTCCAGAAAATGAGTTTCATCGATAAAATTGAGGACAACATTAGCAGTGCCTACGTCGAACACAAGCTCGACCCAATCGAGAAATCCCACCAACATGCTCCAGAAGTGCACGCTACTGGCGAGGACTACCACAGAGGAAGTCGTCTTTCCGATGCGTTCGTTTCTCTGAGCAATGCCATTCATGGAGATACCACTCATAAGACTGGAGAAGCATTCAATGATGCCAATGAGGATGATGATATGGAGAGAAAAATGTCAATGAGCAAGGAAATGTGACTGGAAGTGGCACACAGTTGTTTTGGAAGTGCTAGTTAATGAATCGGTTGCTTGTAAATATCATTTGTATAATTATTAATGTAATTGACAGTAATTTGTCACGGAAGTCTGAATAAATTGCCTTGATATAACTCGGTCATAAAATTTCAGATAGGTTTCAAAGGGAGAAAAATCAAGGCACCGTAAAACCTGYAACAGAAGAGCCCACTTACTTATATCTTTGAGACAACATATCTCGGTTCATGTGATCGATATATAAAAGCTTTAAAGTGATGAAATGTTTATCACAATATCACAAACATTTTATCAGTTGGCACGTTCTTGATATCTTGCGTAGAAGCTAGGAAAAATTAGCTCGATCTTGACAGTGTGGGACCCTTCTATTATAGGTTTTACGGTAATAAGTTTGGAAAAAATTGATTGATCTAGTAAAATGCGGAAATTCAATAATGAAGTTTTTTGACTCGTCCACTAGCATGAAAAAATATAGTTTTATCACAAAAAGGGTTTTTTATTCTTAAATTTCCAGAAGAACTACATTTTTTGAAATCTTGAGAATTTGCTGTTTCAGACAAACTCTCTTTTTATTTGAACCGTATTTTCTTCAAACCTATTTTTTGATAATATATTATGAAAGAAATTAACTTCAAATTTATAGCATTTTTGATATTCCAAAAAATCTTCAATCTTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>501 360 139</canonical_bands>
                <polymorphic_bands>861 139</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATAAAATTTCAGATAGGTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>CGCATTTTACTAGATCAATCAAT</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>CATAAAATTTCAGATAGGTTTCAAAGGGAGAAAAATCAAGGCACCGTAAAACCTGCAACAGAAGAGCCCACTTACTTATATCTTTGAGACAACATATCTCGGTTCATGTGATCGATATATAAAAGCTTTAAAGTGATGAAATGTTTATCACAATATCACAAACATTTTATCAGTTGGCACGTTCTTGATATCTTGCGTAGAAGCTAGGAAAAATTAGCTCGATCTTGACAGTGTGGGACCCTTCTATTATAGGTTTTACGGTAATAAGTTTGGAAAAAATTGATTGATCTAGTAAAATGCG</canonical_amplicon>
		<polymorphic_amplicon>CATAAAATTTCAGATAGGTTTCAAAGGGAGAAAAATCAAGGCACCGTAAAACCTGYAACAGAAGAGCCCACTTACTTATATCTTTGAGACAACATATCTCGGTTCATGTGATCGATATATAAAAGCTTTAAAGTGATGAAATGTTTATCACAATATCACAAACATTTTATCAGTTGGCACGTTCTTGATATCTTGCGTAGAAGCTAGGAAAAATTAGCTCGATCTTGACAGTGTGGGACCCTTCTATTATAGGTTTTACGGTAATAAGTTTGGAAAAAATTGATTGATCTAGTAAAATGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28081</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>608513</contig_pos>
        <strand></strand>
        <context>cttacttata[T/A]ctttgagaca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAAAATCAAGGCACCGTAAAACCTGCAACAGAAGAGCCCACTTACTTATA</left_flank>
        <right_flank>CTTTGAGACAACATATCTCGGTTCATGTGATCGATATATAAAAGCTTTAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCTTTCCAGAAAATGAGTTTCATCGATAAAATTGAGGACAACATTAGCAGTGCCTACGTCGAACACAAGCTCGACCCAATCGAGAAATCCCACCAACATGCTCCAGAAGTGCACGCTACTGGCGAGGACTACCACAGAGGAAGTCGTCTTTCCGATGCGTTCGTTTCTCTGAGCAATGCCATTCATGGAGATACCACTCATAAGACTGGAGAAGCATTCAATGATGCCAATGAGGATGATGATATGGAGAGAAAAATGTCAATGAGCAAGGAAATGTGACTGGAAGTGGCACACAGTTGTTTTGGAAGTGCTAGTTAATGAATCGGTTGCTTGTAAATATCATTTGTATAATTATTAATGTAATTGACAGTAATTTGTCACGGAAGTCTGAATAAATTGCCTTGATATAACTCGGTCATAAAATTTCAGATAGGTTTCAAAGGGAGAAAAATCAAGGCACCGTAAAACCTGCAACAGAAGAGCCCACTTACTTATATCTTTGAGACAACATATCTCGGTTCATGTGATCGATATATAAAAGCTTTAAAGTGATGAAATGTTTATCACAATATCACAAACATTTTATCAGTTGGCACGTTCTTGATATCTTGCGTAGAAGCTAGGAAAAATTAGCTCGATCTTGACAGTGTGGGACCCTTCTATTATAGGTTTTACGGTAATAAGTTTGGAAAAAATTGATTGATCTAGTAAAATGCGGAAATTCAATAATGAAGTTTTTTGACTCGTCCACTAGCATGAAAAAATATAGTTTTATCACAAAAAGGGTTTTTTATTCTTAAATTTCCAGAAGAACTACATTTTTTGAAATCTTGAGAATTTGCTGTTTCAGACAAACTCTCTTTTTATTTGAACCGTATTTTCTTCAAACCTATTTTTTGATAATATATTATGAAAGAAATTAACTTCAAATTTATAGCATTTTTGATATTCCAAAAAATCTTCAATCTTCTGTCAATTTTTTTTCTAAAAATGACCC</canonical>
            <polymorphic>TTTTCTTTCCAGAAAATGAGTTTCATCGATAAAATTGAGGACAACATTAGCAGTGCCTACGTCGAACACAAGCTCGACCCAATCGAGAAATCCCACCAACATGCTCCAGAAGTGCACGCTACTGGCGAGGACTACCACAGAGGAAGTCGTCTTTCCGATGCGTTCGTTTCTCTGAGCAATGCCATTCATGGAGATACCACTCATAAGACTGGAGAAGCATTCAATGATGCCAATGAGGATGATGATATGGAGAGAAAAATGTCAATGAGCAAGGAAATGTGACTGGAAGTGGCACACAGTTGTTTTGGAAGTGCTAGTTAATGAATCGGTTGCTTGTAAATATCATTTGTATAATTATTAATGTAATTGACAGTAATTTGTCACGGAAGTCTGAATAAATTGCCTTGATATAACTCGGTCATAAAATTTCAGATAGGTTTCAAAGGGAGAAAAATCAAGGCACCGTAAAACCTGCAACAGAAGAGCCCACTTACTTATAWCTTTGAGACAACATATCTCGGTTCATGTGATCGATATATAAAAGCTTTAAAGTGATGAAATGTTTATCACAATATCACAAACATTTTATCAGTTGGCACGTTCTTGATATCTTGCGTAGAAGCTAGGAAAAATTAGCTCGATCTTGACAGTGTGGGACCCTTCTATTATAGGTTTTACGGTAATAAGTTTGGAAAAAATTGATTGATCTAGTAAAATGCGGAAATTCAATAATGAAGTTTTTTGACTCGTCCACTAGCATGAAAAAATATAGTTTTATCACAAAAAGGGTTTTTTATTCTTAAATTTCCAGAAGAACTACATTTTTTGAAATCTTGAGAATTTGCTGTTTCAGACAAACTCTCTTTTTATTTGAACCGTATTTTCTTCAAACCTATTTTTTGATAATATATTATGAAAGAAATTAACTTCAAATTTATAGCATTTTTGATATTCCAAAAAATCTTCAATCTTCTGTCAATTTTTTTTCTAAAAATGACCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATAAAATTTCAGATAGGTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>CGCATTTTACTAGATCAATCAAT</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>CATAAAATTTCAGATAGGTTTCAAAGGGAGAAAAATCAAGGCACCGTAAAACCTGCAACAGAAGAGCCCACTTACTTATATCTTTGAGACAACATATCTCGGTTCATGTGATCGATATATAAAAGCTTTAAAGTGATGAAATGTTTATCACAATATCACAAACATTTTATCAGTTGGCACGTTCTTGATATCTTGCGTAGAAGCTAGGAAAAATTAGCTCGATCTTGACAGTGTGGGACCCTTCTATTATAGGTTTTACGGTAATAAGTTTGGAAAAAATTGATTGATCTAGTAAAATGCG</canonical_amplicon>
		<polymorphic_amplicon>CATAAAATTTCAGATAGGTTTCAAAGGGAGAAAAATCAAGGCACCGTAAAACCTGCAACAGAAGAGCCCACTTACTTATAWCTTTGAGACAACATATCTCGGTTCATGTGATCGATATATAAAAGCTTTAAAGTGATGAAATGTTTATCACAATATCACAAACATTTTATCAGTTGGCACGTTCTTGATATCTTGCGTAGAAGCTAGGAAAAATTAGCTCGATCTTGACAGTGTGGGACCCTTCTATTATAGGTTTTACGGTAATAAGTTTGGAAAAAATTGATTGATCTAGTAAAATGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28082</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>609336</contig_pos>
        <strand></strand>
        <context>caactttgac[C/A]caatttatct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ACATGCAGTAAAACCCTGTAAGAAAAGGGCTCCCAACTTTCAACTTTGAC</left_flank>
        <right_flank>CAATTTATCTCGGTTCTCGTAAAAGATACCAGAAAATGTACAACTGATTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGAAATCTTGAGAATTTGCTGTTTCAGACAAACTCTCTTTTTATTTGAACCGTATTTTCTTCAAACCTATTTTTTGATAATATATTATGAAAGAAATTAACTTCAAATTTATAGCATTTTTGATATTCCAAAAAATCTTCAATCTTCTGTCAATTTTTTTTCTAAAAATGACCCGAGTTTTGCCCAAAACTGTGCAAATAAAAGAATCCTTTGGCTCTAGACCACTGTGTTATTTCTTTTTTTGGTGTGGAAACATGATTATTCCCAAGTTCCGCCCATTTAGATCGAGACTATAAAAGATCGGAGTAAGAGAAGGTGGAGACTCGGCATTGTGCAACATTTGAAAAAGCCGTCTTATTTCATTTGAACAAGTTTTTAAAGATTCAAAACTGTTTCGGCAAGCCTTTCCGAATCCCTCAAAGTTTTCATTTGGTACTCTAAACTACACATGCAGTAAAACCCTGTAAGAAAAGGGCTCCCAACTTTCAACTTTGACCCAATTTATCTCGGTTCTCGTAAAAGATACCAGAAAATGTACAACTGATTAATTGTTTATCGTAATCTCACGACCATTTTATCAGTTTTCAAAATTTTGATATCTGCCATAGGAACCGAGATTATAAGGCTTGAAGTATAGGGTGGGGTTCTATTTGAGCATTTAAAGCGTCTCTTCTTCAAAGCAATATCAAATCACTAATCTCTCATTCCCAATAACCCCTCTGGTTTCCAGTGTTCACATTCTCCCGCTTTCCAGAACCTTCTCTTCTGTTCTTCTTCTTATTGTTGTTCTGTTTCTCTATTTCCCTCCAGTTCACAGTCCAGACACCAACGACCATGTTTTTGTTTATTTCTTTGTCTCTCTCGTCGTCTATTTCTCCAGTGTCTGGTCATAAGGGGGACACCCTTCTTGTTTTATTTGTTTTTCGTTTAAAAAGGCAGACATGTGAACGTTTACTATTTTCAACAACTCTATAATTTTTTTTAGGCGATGAAATTT</canonical>
            <polymorphic>TTTTGAAATCTTGAGAATTTGCTGTTTCAGACAAACTCTCTTTTTATTTGAACCGTATTTTCTTCAAACCTATTTTTTGATAATATATTATGAAAGAAATTAACTTCAAATTTATAGCATTTTTGATATTCCAAAAAATCTTCAATCTTCTGTCAATTTTTTTTCTAAAAATGACCCGAGTTTTGCCCAAAACTGTGCAAATAAAAGAATCCTTTGGCTCTAGACCACTGTGTTATTTCTTTTTTTGGTGTGGAAACATGATTATTCCCAAGTTCCGCCCATTTAGATCGAGACTATAAAAGATCGGAGTAAGAGAAGGTGGAGACTCGGCATTGTGCAACATTTGAAAAAGCCGTCTTATTTCATTTGAACAAGTTTTTAAAGATTCAAAACTGTTTCGGCAAGCCTTTCCGAATCCCTCAAAGTTTTCATTTGGTACTCTAAACTACACATGCAGTAAAACCCTGTAAGAAAAGGGCTCCCAACTTTCAACTTTGACMCAATTTATCTCGGTTCTCGTAAAAGATACCAGAAAATGTACAACTGATTAATTGTTTATCGTAATCTCACGACCATTTTATCAGTTTTCAAAATTTTGATATCTGCCATAGGAACCGAGATTATAAGGCTTGAAGTATAGGGTGGGGTTCTATTTGAGCATTTAAAGCGTCTCTTCTTCAAAGCAATATCAAATCACTAATCTCTCATTCCCAATAACCCCTCTGGTTTCCAGTGTTCACATTCTCCCGCTTTCCAGAACCTTCTCTTCTGTTCTTCTTCTTATTGTTGTTCTGTTTCTCTATTTCCCTCCAGTTCACAGTCCAGACACCAACGACCATGTTTTTGTTTATTTCTTTGTCTCTCTCGTCGTCTATTTCTCCAGTGTCTGGTCATAAGGGGGACACCCTTCTTGTTTTATTTGTTTTTCGTTTAAAAAGGCAGACATGTGAACGTTTACTATTTTCAACAACTCTATAATTTTTTTTAGGCGATGAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAGTTTTCATTTGGTACTCT</pcr_primer_p1>
		<pcr_primer_p2>CTTTGAAGAAGAGACGCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>TCAAAGTTTTCATTTGGTACTCTAAACTACACATGCAGTAAAACCCTGTAAGAAAAGGGCTCCCAACTTTCAACTTTGACCCAATTTATCTCGGTTCTCGTAAAAGATACCAGAAAATGTACAACTGATTAATTGTTTATCGTAATCTCACGACCATTTTATCAGTTTTCAAAATTTTGATATCTGCCATAGGAACCGAGATTATAAGGCTTGAAGTATAGGGTGGGGTTCTATTTGAGCATTTAAAGCGTCTCTTCTTCAAAG</canonical_amplicon>
		<polymorphic_amplicon>TCAAAGTTTTCATTTGGTACTCTAAACTACACATGCAGTAAAACCCTGTAAGAAAAGGGCTCCCAACTTTCAACTTTGACMCAATTTATCTCGGTTCTCGTAAAAGATACCAGAAAATGTACAACTGATTAATTGTTTATCGTAATCTCACGACCATTTTATCAGTTTTCAAAATTTTGATATCTGCCATAGGAACCGAGATTATAAGGCTTGAAGTATAGGGTGGGGTTCTATTTGAGCATTTAAAGCGTCTCTTCTTCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28083</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>609385</contig_pos>
        <strand></strand>
        <context>tacaactgat[T/G]aattgtttat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CCCAATTTATCTCGGTTCTCGTAAAAGATACCAGAAAATGTACAACTGAT</left_flank>
        <right_flank>AATTGTTTATCGTAATCTCACGACCATTTTATCAGTTTTCAAAATTTTGA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACCGTATTTTCTTCAAACCTATTTTTTGATAATATATTATGAAAGAAATTAACTTCAAATTTATAGCATTTTTGATATTCCAAAAAATCTTCAATCTTCTGTCAATTTTTTTTCTAAAAATGACCCGAGTTTTGCCCAAAACTGTGCAAATAAAAGAATCCTTTGGCTCTAGACCACTGTGTTATTTCTTTTTTTGGTGTGGAAACATGATTATTCCCAAGTTCCGCCCATTTAGATCGAGACTATAAAAGATCGGAGTAAGAGAAGGTGGAGACTCGGCATTGTGCAACATTTGAAAAAGCCGTCTTATTTCATTTGAACAAGTTTTTAAAGATTCAAAACTGTTTCGGCAAGCCTTTCCGAATCCCTCAAAGTTTTCATTTGGTACTCTAAACTACACATGCAGTAAAACCCTGTAAGAAAAGGGCTCCCAACTTTCAACTTTGACCCAATTTATCTCGGTTCTCGTAAAAGATACCAGAAAATGTACAACTGATTAATTGTTTATCGTAATCTCACGACCATTTTATCAGTTTTCAAAATTTTGATATCTGCCATAGGAACCGAGATTATAAGGCTTGAAGTATAGGGTGGGGTTCTATTTGAGCATTTAAAGCGTCTCTTCTTCAAAGCAATATCAAATCACTAATCTCTCATTCCCAATAACCCCTCTGGTTTCCAGTGTTCACATTCTCCCGCTTTCCAGAACCTTCTCTTCTGTTCTTCTTCTTATTGTTGTTCTGTTTCTCTATTTCCCTCCAGTTCACAGTCCAGACACCAACGACCATGTTTTTGTTTATTTCTTTGTCTCTCTCGTCGTCTATTTCTCCAGTGTCTGGTCATAAGGGGGACACCCTTCTTGTTTTATTTGTTTTTCGTTTAAAAAGGCAGACATGTGAACGTTTACTATTTTCAACAACTCTATAATTTTTTTTAGGCGATGAAATTTTCAGTTGACATCTGACATCATTCGGGTTGTCAGTTGACGAATTTCGAAG</canonical>
            <polymorphic>GAACCGTATTTTCTTCAAACCTATTTTTTGATAATATATTATGAAAGAAATTAACTTCAAATTTATAGCATTTTTGATATTCCAAAAAATCTTCAATCTTCTGTCAATTTTTTTTCTAAAAATGACCCGAGTTTTGCCCAAAACTGTGCAAATAAAAGAATCCTTTGGCTCTAGACCACTGTGTTATTTCTTTTTTTGGTGTGGAAACATGATTATTCCCAAGTTCCGCCCATTTAGATCGAGACTATAAAAGATCGGAGTAAGAGAAGGTGGAGACTCGGCATTGTGCAACATTTGAAAAAGCCGTCTTATTTCATTTGAACAAGTTTTTAAAGATTCAAAACTGTTTCGGCAAGCCTTTCCGAATCCCTCAAAGTTTTCATTTGGTACTCTAAACTACACATGCAGTAAAACCCTGTAAGAAAAGGGCTCCCAACTTTCAACTTTGACCCAATTTATCTCGGTTCTCGTAAAAGATACCAGAAAATGTACAACTGATKAATTGTTTATCGTAATCTCACGACCATTTTATCAGTTTTCAAAATTTTGATATCTGCCATAGGAACCGAGATTATAAGGCTTGAAGTATAGGGTGGGGTTCTATTTGAGCATTTAAAGCGTCTCTTCTTCAAAGCAATATCAAATCACTAATCTCTCATTCCCAATAACCCCTCTGGTTTCCAGTGTTCACATTCTCCCGCTTTCCAGAACCTTCTCTTCTGTTCTTCTTCTTATTGTTGTTCTGTTTCTCTATTTCCCTCCAGTTCACAGTCCAGACACCAACGACCATGTTTTTGTTTATTTCTTTGTCTCTCTCGTCGTCTATTTCTCCAGTGTCTGGTCATAAGGGGGACACCCTTCTTGTTTTATTTGTTTTTCGTTTAAAAAGGCAGACATGTGAACGTTTACTATTTTCAACAACTCTATAATTTTTTTTAGGCGATGAAATTTTCAGTTGACATCTGACATCATTCGGGTTGTCAGTTGACGAATTTCGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>279 269 169 118 114 51</canonical_bands>
                <polymorphic_bands>283 279 269 118 51</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAAGTTTTCATTTGGTACTCT</pcr_primer_p1>
		<pcr_primer_p2>CTTTGAAGAAGAGACGCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>TCAAAGTTTTCATTTGGTACTCTAAACTACACATGCAGTAAAACCCTGTAAGAAAAGGGCTCCCAACTTTCAACTTTGACCCAATTTATCTCGGTTCTCGTAAAAGATACCAGAAAATGTACAACTGATTAATTGTTTATCGTAATCTCACGACCATTTTATCAGTTTTCAAAATTTTGATATCTGCCATAGGAACCGAGATTATAAGGCTTGAAGTATAGGGTGGGGTTCTATTTGAGCATTTAAAGCGTCTCTTCTTCAAAG</canonical_amplicon>
		<polymorphic_amplicon>TCAAAGTTTTCATTTGGTACTCTAAACTACACATGCAGTAAAACCCTGTAAGAAAAGGGCTCCCAACTTTCAACTTTGACCCAATTTATCTCGGTTCTCGTAAAAGATACCAGAAAATGTACAACTGATKAATTGTTTATCGTAATCTCACGACCATTTTATCAGTTTTCAAAATTTTGATATCTGCCATAGGAACCGAGATTATAAGGCTTGAAGTATAGGGTGGGGTTCTATTTGAGCATTTAAAGCGTCTCTTCTTCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28084</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>609427</contig_pos>
        <strand></strand>
        <context>tcagttttca[A/G]aattttgata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAACTGATTAATTGTTTATCGTAATCTCACGACCATTTTATCAGTTTTCA</left_flank>
        <right_flank>AATTTTGATATCTGCCATAGGAACCGAGATTATAAGGCTTGAAGTATAGG</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAGAAATTAACTTCAAATTTATAGCATTTTTGATATTCCAAAAAATCTTCAATCTTCTGTCAATTTTTTTTCTAAAAATGACCCGAGTTTTGCCCAAAACTGTGCAAATAAAAGAATCCTTTGGCTCTAGACCACTGTGTTATTTCTTTTTTTGGTGTGGAAACATGATTATTCCCAAGTTCCGCCCATTTAGATCGAGACTATAAAAGATCGGAGTAAGAGAAGGTGGAGACTCGGCATTGTGCAACATTTGAAAAAGCCGTCTTATTTCATTTGAACAAGTTTTTAAAGATTCAAAACTGTTTCGGCAAGCCTTTCCGAATCCCTCAAAGTTTTCATTTGGTACTCTAAACTACACATGCAGTAAAACCCTGTAAGAAAAGGGCTCCCAACTTTCAACTTTGACCCAATTTATCTCGGTTCTCGTAAAAGATACCAGAAAATGTACAACTGATTAATTGTTTATCGTAATCTCACGACCATTTTATCAGTTTTCAAAATTTTGATATCTGCCATAGGAACCGAGATTATAAGGCTTGAAGTATAGGGTGGGGTTCTATTTGAGCATTTAAAGCGTCTCTTCTTCAAAGCAATATCAAATCACTAATCTCTCATTCCCAATAACCCCTCTGGTTTCCAGTGTTCACATTCTCCCGCTTTCCAGAACCTTCTCTTCTGTTCTTCTTCTTATTGTTGTTCTGTTTCTCTATTTCCCTCCAGTTCACAGTCCAGACACCAACGACCATGTTTTTGTTTATTTCTTTGTCTCTCTCGTCGTCTATTTCTCCAGTGTCTGGTCATAAGGGGGACACCCTTCTTGTTTTATTTGTTTTTCGTTTAAAAAGGCAGACATGTGAACGTTTACTATTTTCAACAACTCTATAATTTTTTTTAGGCGATGAAATTTTCAGTTGACATCTGACATCATTCGGGTTGTCAGTTGACGAATTTCGAAGGTTCTATATAAACCATTCGTTAGTATCACCAGTCTTGTTTTT</canonical>
            <polymorphic>GAAAGAAATTAACTTCAAATTTATAGCATTTTTGATATTCCAAAAAATCTTCAATCTTCTGTCAATTTTTTTTCTAAAAATGACCCGAGTTTTGCCCAAAACTGTGCAAATAAAAGAATCCTTTGGCTCTAGACCACTGTGTTATTTCTTTTTTTGGTGTGGAAACATGATTATTCCCAAGTTCCGCCCATTTAGATCGAGACTATAAAAGATCGGAGTAAGAGAAGGTGGAGACTCGGCATTGTGCAACATTTGAAAAAGCCGTCTTATTTCATTTGAACAAGTTTTTAAAGATTCAAAACTGTTTCGGCAAGCCTTTCCGAATCCCTCAAAGTTTTCATTTGGTACTCTAAACTACACATGCAGTAAAACCCTGTAAGAAAAGGGCTCCCAACTTTCAACTTTGACCCAATTTATCTCGGTTCTCGTAAAAGATACCAGAAAATGTACAACTGATTAATTGTTTATCGTAATCTCACGACCATTTTATCAGTTTTCARAATTTTGATATCTGCCATAGGAACCGAGATTATAAGGCTTGAAGTATAGGGTGGGGTTCTATTTGAGCATTTAAAGCGTCTCTTCTTCAAAGCAATATCAAATCACTAATCTCTCATTCCCAATAACCCCTCTGGTTTCCAGTGTTCACATTCTCCCGCTTTCCAGAACCTTCTCTTCTGTTCTTCTTCTTATTGTTGTTCTGTTTCTCTATTTCCCTCCAGTTCACAGTCCAGACACCAACGACCATGTTTTTGTTTATTTCTTTGTCTCTCTCGTCGTCTATTTCTCCAGTGTCTGGTCATAAGGGGGACACCCTTCTTGTTTTATTTGTTTTTCGTTTAAAAAGGCAGACATGTGAACGTTTACTATTTTCAACAACTCTATAATTTTTTTTAGGCGATGAAATTTTCAGTTGACATCTGACATCATTCGGGTTGTCAGTTGACGAATTTCGAAGGTTCTATATAAACCATTCGTTAGTATCACCAGTCTTGTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>483 404 52 44 17</canonical_bands>
                <polymorphic_bands>887 52 44 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAAGTTTTCATTTGGTACTCT</pcr_primer_p1>
		<pcr_primer_p2>CTTTGAAGAAGAGACGCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>TCAAAGTTTTCATTTGGTACTCTAAACTACACATGCAGTAAAACCCTGTAAGAAAAGGGCTCCCAACTTTCAACTTTGACCCAATTTATCTCGGTTCTCGTAAAAGATACCAGAAAATGTACAACTGATTAATTGTTTATCGTAATCTCACGACCATTTTATCAGTTTTCAAAATTTTGATATCTGCCATAGGAACCGAGATTATAAGGCTTGAAGTATAGGGTGGGGTTCTATTTGAGCATTTAAAGCGTCTCTTCTTCAAAG</canonical_amplicon>
		<polymorphic_amplicon>TCAAAGTTTTCATTTGGTACTCTAAACTACACATGCAGTAAAACCCTGTAAGAAAAGGGCTCCCAACTTTCAACTTTGACCCAATTTATCTCGGTTCTCGTAAAAGATACCAGAAAATGTACAACTGATTAATTGTTTATCGTAATCTCACGACCATTTTATCAGTTTTCARAATTTTGATATCTGCCATAGGAACCGAGATTATAAGGCTTGAAGTATAGGGTGGGGTTCTATTTGAGCATTTAAAGCGTCTCTTCTTCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28085</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>636372</contig_pos>
        <strand>+</strand>
        <context>ATATTGAAAA[A/G]ATCGTACCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTACATTTTGGATGCGATGCCACGACCAAACGTAGAATATATTGAAAA</left_flank>
        <right_flank>ATCGTACCAATGCTGAAGGAAAAAGTTCCGATGGAACAAATTGACGTTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATAAAACTGACGGGTTATCCGGAACATATAAAGTGATGATTATTGGAAATAGTTGGACAGCAAATCATGCTAACGTCTTCTATCAAGAATGTGGTCATATTGCTAAGAGCATTCTGCAAGGCGCTGCTTCGGGTTCGTGATTTTTTAAAATTAAAACAAAAAAAAAAATATTTTTTCAGCTTGCGAGCCTCTCTACCCTACTCGTTTATCAAGAGCTTGTCGCTCTAATTTTACCAACTTTGAGGAACGAATACGTCAGGAAAAGCCAGATTTTGTTTTTATGTTCACAAGGTGCTCTTAGAAAATGTTTCATAATTATATTTCTTTTTTAGATTCGTCACTATTGGCGATCCGTTTCCACCGAATGTCACAGTTTCCGACAATGACACAATTTATGAAACTATGAAAGAGCAAATGCTAAAATTTATACCAAATATATCTCGAAGACTTTACATTTTGGATGCGATGCCACGACCAAACGTAGAATATATTGAAAAAATCGTACCAATGCTGAAGGAAAAAGTTCCGATGGAACAAATTGACGTTAGTGATTGAGTGAAAACGTATAATTCAAAAATTATTCCAGAATTTTCTTGTCAACCAAACCTTGTACCAAACAGCGCGTCAGAGATATGCCAAAATCGCCAAAGATTGTGGTCCGACATGTGTTCTCGTAGATTATGACCCGATTTTCTGGAATTCGACTTCTGGAACTTTTCGGTTTTACGACGAGATTGGAAGGTCCTATTTGAGTACTTCAACTCATTTGACACCTCGAGGATTAGAACATATACGAAATGTTTGGACCGATGTTTGTAGAAGGATATTGTGAAGTTTTTTAAATTTTTGTACATATGTCTTGAATAAAGAATTTGTTGTTTTTTTATCAACTATGTATTACATTTCAATTTTTCATTTTATTATTTTCAAAAAATCATTTTTTTGGAAAGTGAAACGATATTTGAAGAATAAAACCTTCAAAAACAATCGCAGAATTT</canonical>
            <polymorphic>TCATAAAACTGACGGGTTATCCGGAACATATAAAGTGATGATTATTGGAAATAGTTGGACAGCAAATCATGCTAACGTCTTCTATCAAGAATGTGGTCATATTGCTAAGAGCATTCTGCAAGGCGCTGCTTCGGGTTCGTGATTTTTTAAAATTAAAACAAAAAAAAAAATATTTTTTCAGCTTGCGAGCCTCTCTACCCTACTCGTTTATCAAGAGCTTGTCGCTCTAATTTTACCAACTTTGAGGAACGAATACGTCAGGAAAAGCCAGATTTTGTTTTTATGTTCACAAGGTGCTCTTAGAAAATGTTTCATAATTATATTTCTTTTTTAGATTCGTCACTATTGGCGATCCGTTTCCACCGAATGTCACAGTTTCCGACAATGACACAATTTATGAAACTATGAAAGAGCAAATGCTAAAATTTATACCAAATATATCTCGAAGACTTTACATTTTGGATGCGATGCCACGACCAAACGTAGAATATATTGAAAARATCGTACCAATGCTGAAGGAAAAAGTTCCGATGGAACAAATTGACGTTAGTGATTGAGTGAAAACGTATAATTCAAAAATTATTCCAGAATTTTCTTGTCAACCAAACCTTGTACCAAACAGCGCGTCAGAGATATGCCAAAATCGCCAAAGATTGTGGTCCGACATGTGTTCTCGTAGATTATGACCCGATTTTCTGGAATTCGACTTCTGGAACTTTTCGGTTTTACGACGAGATTGGAAGGTCCTATTTGAGTACTTCAACTCATTTGACACCTCGAGGATTAGAACATATACGAAATGTTTGGACCGATGTTTGTAGAAGGATATTGTGAAGTTTTTTAAATTTTTGTACATATGTCTTGAATAAAGAATTTGTTGTTTTTTTATCAACTATGTATTACATTTCAATTTTTCATTTTATTATTTTCAAAAAATCATTTTTTTGGAAAGTGAAACGATATTTGAAGAATAAAACCTTCAAAAACAATCGCAGAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAAACTATGAAAGAGCAAATG</pcr_primer_p1>
		<pcr_primer_p2>CGATTTTGGCATATCTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGAAACTATGAAAGAGCAAATGCTAAAATTTATACCAAATATATCTCGAAGACTTTACATTTTGGATGCGATGCCACGACCAAACGTAGAATATATTGAAAAAATCGTACCAATGCTGAAGGAAAAAGTTCCGATGGAACAAATTGACGTTAGTGATTGAGTGAAAACGTATAATTCAAAAATTATTCCAGAATTTTCTTGTCAACCAAACCTTGTACCAAACAGCGCGTCAGAGATATGCCAAAATCG</canonical_amplicon>
		<polymorphic_amplicon>ATGAAACTATGAAAGAGCAAATGCTAAAATTTATACCAAATATATCTCGAAGACTTTACATTTTGGATGCGATGCCACGACCAAACGTAGAATATATTGAAAARATCGTACCAATGCTGAAGGAAAAAGTTCCGATGGAACAAATTGACGTTAGTGATTGAGTGAAAACGTATAATTCAAAAATTATTCCAGAATTTTCTTGTCAACCAAACCTTGTACCAAACAGCGCGTCAGAGATATGCCAAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28086</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>636464</contig_pos>
        <strand>+</strand>
        <context>ATTCCAGAAT[C/T]TTCTTGTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGACGTTAGTGATTGAGTGAAAACGTATAATTCAAAAATTATTCCAGAAT</left_flank>
        <right_flank>TTCTTGTCAACCAAACCTTGTACCAAACAGCGCGTCAGAGATATGCCAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGGTCATATTGCTAAGAGCATTCTGCAAGGCGCTGCTTCGGGTTCGTGATTTTTTAAAATTAAAACAAAAAAAAAAATATTTTTTCAGCTTGCGAGCCTCTCTACCCTACTCGTTTATCAAGAGCTTGTCGCTCTAATTTTACCAACTTTGAGGAACGAATACGTCAGGAAAAGCCAGATTTTGTTTTTATGTTCACAAGGTGCTCTTAGAAAATGTTTCATAATTATATTTCTTTTTTAGATTCGTCACTATTGGCGATCCGTTTCCACCGAATGTCACAGTTTCCGACAATGACACAATTTATGAAACTATGAAAGAGCAAATGCTAAAATTTATACCAAATATATCTCGAAGACTTTACATTTTGGATGCGATGCCACGACCAAACGTAGAATATATTGAAAAAATCGTACCAATGCTGAAGGAAAAAGTTCCGATGGAACAAATTGACGTTAGTGATTGAGTGAAAACGTATAATTCAAAAATTATTCCAGAATTTTCTTGTCAACCAAACCTTGTACCAAACAGCGCGTCAGAGATATGCCAAAATCGCCAAAGATTGTGGTCCGACATGTGTTCTCGTAGATTATGACCCGATTTTCTGGAATTCGACTTCTGGAACTTTTCGGTTTTACGACGAGATTGGAAGGTCCTATTTGAGTACTTCAACTCATTTGACACCTCGAGGATTAGAACATATACGAAATGTTTGGACCGATGTTTGTAGAAGGATATTGTGAAGTTTTTTAAATTTTTGTACATATGTCTTGAATAAAGAATTTGTTGTTTTTTTATCAACTATGTATTACATTTCAATTTTTCATTTTATTATTTTCAAAAAATCATTTTTTTGGAAAGTGAAACGATATTTGAAGAATAAAACCTTCAAAAACAATCGCAGAATTTTTAGAGATTCTCCAATTCTACTGGCTGAAAAATTGCAAACTTTCAATTTGTCGAATTTTTCCAAGATTTCTAACCGAAACCTTATTATTTGA</canonical>
            <polymorphic>GTGGTCATATTGCTAAGAGCATTCTGCAAGGCGCTGCTTCGGGTTCGTGATTTTTTAAAATTAAAACAAAAAAAAAAATATTTTTTCAGCTTGCGAGCCTCTCTACCCTACTCGTTTATCAAGAGCTTGTCGCTCTAATTTTACCAACTTTGAGGAACGAATACGTCAGGAAAAGCCAGATTTTGTTTTTATGTTCACAAGGTGCTCTTAGAAAATGTTTCATAATTATATTTCTTTTTTAGATTCGTCACTATTGGCGATCCGTTTCCACCGAATGTCACAGTTTCCGACAATGACACAATTTATGAAACTATGAAAGAGCAAATGCTAAAATTTATACCAAATATATCTCGAAGACTTTACATTTTGGATGCGATGCCACGACCAAACGTAGAATATATTGAAAAAATCGTACCAATGCTGAAGGAAAAAGTTCCGATGGAACAAATTGACGTTAGTGATTGAGTGAAAACGTATAATTCAAAAATTATTCCAGAATYTTCTTGTCAACCAAACCTTGTACCAAACAGCGCGTCAGAGATATGCCAAAATCGCCAAAGATTGTGGTCCGACATGTGTTCTCGTAGATTATGACCCGATTTTCTGGAATTCGACTTCTGGAACTTTTCGGTTTTACGACGAGATTGGAAGGTCCTATTTGAGTACTTCAACTCATTTGACACCTCGAGGATTAGAACATATACGAAATGTTTGGACCGATGTTTGTAGAAGGATATTGTGAAGTTTTTTAAATTTTTGTACATATGTCTTGAATAAAGAATTTGTTGTTTTTTTATCAACTATGTATTACATTTCAATTTTTCATTTTATTATTTTCAAAAAATCATTTTTTTGGAAAGTGAAACGATATTTGAAGAATAAAACCTTCAAAAACAATCGCAGAATTTTTAGAGATTCTCCAATTCTACTGGCTGAAAAATTGCAAACTTTCAATTTGTCGAATTTTTCCAAGATTTCTAACCGAAACCTTATTATTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>331 165 144 124 111 58 39 28</canonical_bands>
                <polymorphic_bands>331 276 144 124 58 39 28</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>144 115 111 87 87 78 76 58 39 37 32 31 28 18 17 14 11 9 8</canonical_bands>
                <polymorphic_bands>144 122 115 87 87 78 76 58 39 37 32 31 28 18 17 14 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAATTGACGTTAGTGATTGAG</pcr_primer_p1>
		<pcr_primer_p2>GAGGTGTCAAATGAGTTGAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ACAAATTGACGTTAGTGATTGAGTGAAAACGTATAATTCAAAAATTATTCCAGAATTTTCTTGTCAACCAAACCTTGTACCAAACAGCGCGTCAGAGATATGCCAAAATCGCCAAAGATTGTGGTCCGACATGTGTTCTCGTAGATTATGACCCGATTTTCTGGAATTCGACTTCTGGAACTTTTCGGTTTTACGACGAGATTGGAAGGTCCTATTTGAGTACTTCAACTCATTTGACACCTC</canonical_amplicon>
		<polymorphic_amplicon>ACAAATTGACGTTAGTGATTGAGTGAAAACGTATAATTCAAAAATTATTCCAGAATYTTCTTGTCAACCAAACCTTGTACCAAACAGCGCGTCAGAGATATGCCAAAATCGCCAAAGATTGTGGTCCGACATGTGTTCTCGTAGATTATGACCCGATTTTCTGGAATTCGACTTCTGGAACTTTTCGGTTTTACGACGAGATTGGAAGGTCCTATTTGAGTACTTCAACTCATTTGACACCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28087</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>636475</contig_pos>
        <strand>+</strand>
        <context>TTCTTGTCAA[C/T]CAAACCTTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGAGTGAAAACGTATAATTCAAAAATTATTCCAGAATTTTCTTGTCAA</left_flank>
        <right_flank>CAAACCTTGTACCAAACAGCGCGTCAGAGATATGCCAAAATCGCCAAAGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTAAGAGCATTCTGCAAGGCGCTGCTTCGGGTTCGTGATTTTTTAAAATTAAAACAAAAAAAAAAATATTTTTTCAGCTTGCGAGCCTCTCTACCCTACTCGTTTATCAAGAGCTTGTCGCTCTAATTTTACCAACTTTGAGGAACGAATACGTCAGGAAAAGCCAGATTTTGTTTTTATGTTCACAAGGTGCTCTTAGAAAATGTTTCATAATTATATTTCTTTTTTAGATTCGTCACTATTGGCGATCCGTTTCCACCGAATGTCACAGTTTCCGACAATGACACAATTTATGAAACTATGAAAGAGCAAATGCTAAAATTTATACCAAATATATCTCGAAGACTTTACATTTTGGATGCGATGCCACGACCAAACGTAGAATATATTGAAAAAATCGTACCAATGCTGAAGGAAAAAGTTCCGATGGAACAAATTGACGTTAGTGATTGAGTGAAAACGTATAATTCAAAAATTATTCCAGAATTTTCTTGTCAACCAAACCTTGTACCAAACAGCGCGTCAGAGATATGCCAAAATCGCCAAAGATTGTGGTCCGACATGTGTTCTCGTAGATTATGACCCGATTTTCTGGAATTCGACTTCTGGAACTTTTCGGTTTTACGACGAGATTGGAAGGTCCTATTTGAGTACTTCAACTCATTTGACACCTCGAGGATTAGAACATATACGAAATGTTTGGACCGATGTTTGTAGAAGGATATTGTGAAGTTTTTTAAATTTTTGTACATATGTCTTGAATAAAGAATTTGTTGTTTTTTTATCAACTATGTATTACATTTCAATTTTTCATTTTATTATTTTCAAAAAATCATTTTTTTGGAAAGTGAAACGATATTTGAAGAATAAAACCTTCAAAAACAATCGCAGAATTTTTAGAGATTCTCCAATTCTACTGGCTGAAAAATTGCAAACTTTCAATTTGTCGAATTTTTCCAAGATTTCTAACCGAAACCTTATTATTTGATGGCGATCTAG</canonical>
            <polymorphic>GCTAAGAGCATTCTGCAAGGCGCTGCTTCGGGTTCGTGATTTTTTAAAATTAAAACAAAAAAAAAAATATTTTTTCAGCTTGCGAGCCTCTCTACCCTACTCGTTTATCAAGAGCTTGTCGCTCTAATTTTACCAACTTTGAGGAACGAATACGTCAGGAAAAGCCAGATTTTGTTTTTATGTTCACAAGGTGCTCTTAGAAAATGTTTCATAATTATATTTCTTTTTTAGATTCGTCACTATTGGCGATCCGTTTCCACCGAATGTCACAGTTTCCGACAATGACACAATTTATGAAACTATGAAAGAGCAAATGCTAAAATTTATACCAAATATATCTCGAAGACTTTACATTTTGGATGCGATGCCACGACCAAACGTAGAATATATTGAAAAAATCGTACCAATGCTGAAGGAAAAAGTTCCGATGGAACAAATTGACGTTAGTGATTGAGTGAAAACGTATAATTCAAAAATTATTCCAGAATTTTCTTGTCAAYCAAACCTTGTACCAAACAGCGCGTCAGAGATATGCCAAAATCGCCAAAGATTGTGGTCCGACATGTGTTCTCGTAGATTATGACCCGATTTTCTGGAATTCGACTTCTGGAACTTTTCGGTTTTACGACGAGATTGGAAGGTCCTATTTGAGTACTTCAACTCATTTGACACCTCGAGGATTAGAACATATACGAAATGTTTGGACCGATGTTTGTAGAAGGATATTGTGAAGTTTTTTAAATTTTTGTACATATGTCTTGAATAAAGAATTTGTTGTTTTTTTATCAACTATGTATTACATTTCAATTTTTCATTTTATTATTTTCAAAAAATCATTTTTTTGGAAAGTGAAACGATATTTGAAGAATAAAACCTTCAAAAACAATCGCAGAATTTTTAGAGATTCTCCAATTCTACTGGCTGAAAAATTGCAAACTTTCAATTTGTCGAATTTTTCCAAGATTTCTAACCGAAACCTTATTATTTGATGGCGATCTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>503 313 184</canonical_bands>
                <polymorphic_bands>816 184</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAATTGACGTTAGTGATTGAG</pcr_primer_p1>
		<pcr_primer_p2>GAGGTGTCAAATGAGTTGAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ACAAATTGACGTTAGTGATTGAGTGAAAACGTATAATTCAAAAATTATTCCAGAATTTTCTTGTCAACCAAACCTTGTACCAAACAGCGCGTCAGAGATATGCCAAAATCGCCAAAGATTGTGGTCCGACATGTGTTCTCGTAGATTATGACCCGATTTTCTGGAATTCGACTTCTGGAACTTTTCGGTTTTACGACGAGATTGGAAGGTCCTATTTGAGTACTTCAACTCATTTGACACCTC</canonical_amplicon>
		<polymorphic_amplicon>ACAAATTGACGTTAGTGATTGAGTGAAAACGTATAATTCAAAAATTATTCCAGAATTTTCTTGTCAAYCAAACCTTGTACCAAACAGCGCGTCAGAGATATGCCAAAATCGCCAAAGATTGTGGTCCGACATGTGTTCTCGTAGATTATGACCCGATTTTCTGGAATTCGACTTCTGGAACTTTTCGGTTTTACGACGAGATTGGAAGGTCCTATTTGAGTACTTCAACTCATTTGACACCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28088</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>636487</contig_pos>
        <strand>+</strand>
        <context>AAACCTTGTA[C/T]CAAACAGCGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTATAATTCAAAAATTATTCCAGAATTTTCTTGTCAACCAAACCTTGTA</left_flank>
        <right_flank>CAAACAGCGCGTCAGAGATATGCCAAAATCGCCAAAGATTGTGGTCCGAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGCAAGGCGCTGCTTCGGGTTCGTGATTTTTTAAAATTAAAACAAAAAAAAAAATATTTTTTCAGCTTGCGAGCCTCTCTACCCTACTCGTTTATCAAGAGCTTGTCGCTCTAATTTTACCAACTTTGAGGAACGAATACGTCAGGAAAAGCCAGATTTTGTTTTTATGTTCACAAGGTGCTCTTAGAAAATGTTTCATAATTATATTTCTTTTTTAGATTCGTCACTATTGGCGATCCGTTTCCACCGAATGTCACAGTTTCCGACAATGACACAATTTATGAAACTATGAAAGAGCAAATGCTAAAATTTATACCAAATATATCTCGAAGACTTTACATTTTGGATGCGATGCCACGACCAAACGTAGAATATATTGAAAAAATCGTACCAATGCTGAAGGAAAAAGTTCCGATGGAACAAATTGACGTTAGTGATTGAGTGAAAACGTATAATTCAAAAATTATTCCAGAATTTTCTTGTCAACCAAACCTTGTACCAAACAGCGCGTCAGAGATATGCCAAAATCGCCAAAGATTGTGGTCCGACATGTGTTCTCGTAGATTATGACCCGATTTTCTGGAATTCGACTTCTGGAACTTTTCGGTTTTACGACGAGATTGGAAGGTCCTATTTGAGTACTTCAACTCATTTGACACCTCGAGGATTAGAACATATACGAAATGTTTGGACCGATGTTTGTAGAAGGATATTGTGAAGTTTTTTAAATTTTTGTACATATGTCTTGAATAAAGAATTTGTTGTTTTTTTATCAACTATGTATTACATTTCAATTTTTCATTTTATTATTTTCAAAAAATCATTTTTTTGGAAAGTGAAACGATATTTGAAGAATAAAACCTTCAAAAACAATCGCAGAATTTTTAGAGATTCTCCAATTCTACTGGCTGAAAAATTGCAAACTTTCAATTTGTCGAATTTTTCCAAGATTTCTAACCGAAACCTTATTATTTGATGGCGATCTAGGAACAGTACTAT</canonical>
            <polymorphic>CTGCAAGGCGCTGCTTCGGGTTCGTGATTTTTTAAAATTAAAACAAAAAAAAAAATATTTTTTCAGCTTGCGAGCCTCTCTACCCTACTCGTTTATCAAGAGCTTGTCGCTCTAATTTTACCAACTTTGAGGAACGAATACGTCAGGAAAAGCCAGATTTTGTTTTTATGTTCACAAGGTGCTCTTAGAAAATGTTTCATAATTATATTTCTTTTTTAGATTCGTCACTATTGGCGATCCGTTTCCACCGAATGTCACAGTTTCCGACAATGACACAATTTATGAAACTATGAAAGAGCAAATGCTAAAATTTATACCAAATATATCTCGAAGACTTTACATTTTGGATGCGATGCCACGACCAAACGTAGAATATATTGAAAAAATCGTACCAATGCTGAAGGAAAAAGTTCCGATGGAACAAATTGACGTTAGTGATTGAGTGAAAACGTATAATTCAAAAATTATTCCAGAATTTTCTTGTCAACCAAACCTTGTAYCAAACAGCGCGTCAGAGATATGCCAAAATCGCCAAAGATTGTGGTCCGACATGTGTTCTCGTAGATTATGACCCGATTTTCTGGAATTCGACTTCTGGAACTTTTCGGTTTTACGACGAGATTGGAAGGTCCTATTTGAGTACTTCAACTCATTTGACACCTCGAGGATTAGAACATATACGAAATGTTTGGACCGATGTTTGTAGAAGGATATTGTGAAGTTTTTTAAATTTTTGTACATATGTCTTGAATAAAGAATTTGTTGTTTTTTTATCAACTATGTATTACATTTCAATTTTTCATTTTATTATTTTCAAAAAATCATTTTTTTGGAAAGTGAAACGATATTTGAAGAATAAAACCTTCAAAAACAATCGCAGAATTTTTAGAGATTCTCCAATTCTACTGGCTGAAAAATTGCAAACTTTCAATTTGTCGAATTTTTCCAAGATTTCTAACCGAAACCTTATTATTTGATGGCGATCTAGGAACAGTACTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>390 258 143 108 96 5</canonical_bands>
                <polymorphic_bands>390 258 251 96 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAATTGACGTTAGTGATTGAG</pcr_primer_p1>
		<pcr_primer_p2>GAGGTGTCAAATGAGTTGAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ACAAATTGACGTTAGTGATTGAGTGAAAACGTATAATTCAAAAATTATTCCAGAATTTTCTTGTCAACCAAACCTTGTACCAAACAGCGCGTCAGAGATATGCCAAAATCGCCAAAGATTGTGGTCCGACATGTGTTCTCGTAGATTATGACCCGATTTTCTGGAATTCGACTTCTGGAACTTTTCGGTTTTACGACGAGATTGGAAGGTCCTATTTGAGTACTTCAACTCATTTGACACCTC</canonical_amplicon>
		<polymorphic_amplicon>ACAAATTGACGTTAGTGATTGAGTGAAAACGTATAATTCAAAAATTATTCCAGAATTTTCTTGTCAACCAAACCTTGTAYCAAACAGCGCGTCAGAGATATGCCAAAATCGCCAAAGATTGTGGTCCGACATGTGTTCTCGTAGATTATGACCCGATTTTCTGGAATTCGACTTCTGGAACTTTTCGGTTTTACGACGAGATTGGAAGGTCCTATTTGAGTACTTCAACTCATTTGACACCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28089</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>636553</contig_pos>
        <strand>+</strand>
        <context>TTCTCGTAGA[C/T]TATGACCCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGATATGCCAAAATCGCCAAAGATTGTGGTCCGACATGTGTTCTCGTAGA</left_flank>
        <right_flank>TATGACCCGATTTTCTGGAATTCGACTTCTGGAACTTTTCGGTTTTACGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGCGAGCCTCTCTACCCTACTCGTTTATCAAGAGCTTGTCGCTCTAATTTTACCAACTTTGAGGAACGAATACGTCAGGAAAAGCCAGATTTTGTTTTTATGTTCACAAGGTGCTCTTAGAAAATGTTTCATAATTATATTTCTTTTTTAGATTCGTCACTATTGGCGATCCGTTTCCACCGAATGTCACAGTTTCCGACAATGACACAATTTATGAAACTATGAAAGAGCAAATGCTAAAATTTATACCAAATATATCTCGAAGACTTTACATTTTGGATGCGATGCCACGACCAAACGTAGAATATATTGAAAAAATCGTACCAATGCTGAAGGAAAAAGTTCCGATGGAACAAATTGACGTTAGTGATTGAGTGAAAACGTATAATTCAAAAATTATTCCAGAATTTTCTTGTCAACCAAACCTTGTACCAAACAGCGCGTCAGAGATATGCCAAAATCGCCAAAGATTGTGGTCCGACATGTGTTCTCGTAGATTATGACCCGATTTTCTGGAATTCGACTTCTGGAACTTTTCGGTTTTACGACGAGATTGGAAGGTCCTATTTGAGTACTTCAACTCATTTGACACCTCGAGGATTAGAACATATACGAAATGTTTGGACCGATGTTTGTAGAAGGATATTGTGAAGTTTTTTAAATTTTTGTACATATGTCTTGAATAAAGAATTTGTTGTTTTTTTATCAACTATGTATTACATTTCAATTTTTCATTTTATTATTTTCAAAAAATCATTTTTTTGGAAAGTGAAACGATATTTGAAGAATAAAACCTTCAAAAACAATCGCAGAATTTTTAGAGATTCTCCAATTCTACTGGCTGAAAAATTGCAAACTTTCAATTTGTCGAATTTTTCCAAGATTTCTAACCGAAACCTTATTATTTGATGGCGATCTAGGAACAGTACTATTCGCAAATACCGTAACCTCTTCACAGCATAGTGCAGAACGGTAGCAATGGATGGAGAACAAGAAAA</canonical>
            <polymorphic>CTTGCGAGCCTCTCTACCCTACTCGTTTATCAAGAGCTTGTCGCTCTAATTTTACCAACTTTGAGGAACGAATACGTCAGGAAAAGCCAGATTTTGTTTTTATGTTCACAAGGTGCTCTTAGAAAATGTTTCATAATTATATTTCTTTTTTAGATTCGTCACTATTGGCGATCCGTTTCCACCGAATGTCACAGTTTCCGACAATGACACAATTTATGAAACTATGAAAGAGCAAATGCTAAAATTTATACCAAATATATCTCGAAGACTTTACATTTTGGATGCGATGCCACGACCAAACGTAGAATATATTGAAAAAATCGTACCAATGCTGAAGGAAAAAGTTCCGATGGAACAAATTGACGTTAGTGATTGAGTGAAAACGTATAATTCAAAAATTATTCCAGAATTTTCTTGTCAACCAAACCTTGTACCAAACAGCGCGTCAGAGATATGCCAAAATCGCCAAAGATTGTGGTCCGACATGTGTTCTCGTAGAYTATGACCCGATTTTCTGGAATTCGACTTCTGGAACTTTTCGGTTTTACGACGAGATTGGAAGGTCCTATTTGAGTACTTCAACTCATTTGACACCTCGAGGATTAGAACATATACGAAATGTTTGGACCGATGTTTGTAGAAGGATATTGTGAAGTTTTTTAAATTTTTGTACATATGTCTTGAATAAAGAATTTGTTGTTTTTTTATCAACTATGTATTACATTTCAATTTTTCATTTTATTATTTTCAAAAAATCATTTTTTTGGAAAGTGAAACGATATTTGAAGAATAAAACCTTCAAAAACAATCGCAGAATTTTTAGAGATTCTCCAATTCTACTGGCTGAAAAATTGCAAACTTTCAATTTGTCGAATTTTTCCAAGATTTCTAACCGAAACCTTATTATTTGATGGCGATCTAGGAACAGTACTATTCGCAAATACCGTAACCTCTTCACAGCATAGTGCAGAACGGTAGCAATGGATGGAGAACAAGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAATTGACGTTAGTGATTGAG</pcr_primer_p1>
		<pcr_primer_p2>GAGGTGTCAAATGAGTTGAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ACAAATTGACGTTAGTGATTGAGTGAAAACGTATAATTCAAAAATTATTCCAGAATTTTCTTGTCAACCAAACCTTGTACCAAACAGCGCGTCAGAGATATGCCAAAATCGCCAAAGATTGTGGTCCGACATGTGTTCTCGTAGATTATGACCCGATTTTCTGGAATTCGACTTCTGGAACTTTTCGGTTTTACGACGAGATTGGAAGGTCCTATTTGAGTACTTCAACTCATTTGACACCTC</canonical_amplicon>
		<polymorphic_amplicon>ACAAATTGACGTTAGTGATTGAGTGAAAACGTATAATTCAAAAATTATTCCAGAATTTTCTTGTCAACCAAACCTTGTACCAAACAGCGCGTCAGAGATATGCCAAAATCGCCAAAGATTGTGGTCCGACATGTGTTCTCGTAGAYTATGACCCGATTTTCTGGAATTCGACTTCTGGAACTTTTCGGTTTTACGACGAGATTGGAAGGTCCTATTTGAGTACTTCAACTCATTTGACACCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28090</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>636568</contig_pos>
        <strand>+</strand>
        <context>ACCCGATTTT[C/T]TGGAATTCGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCAAAGATTGTGGTCCGACATGTGTTCTCGTAGATTATGACCCGATTTT</left_flank>
        <right_flank>TGGAATTCGACTTCTGGAACTTTTCGGTTTTACGACGAGATTGGAAGGTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCCTACTCGTTTATCAAGAGCTTGTCGCTCTAATTTTACCAACTTTGAGGAACGAATACGTCAGGAAAAGCCAGATTTTGTTTTTATGTTCACAAGGTGCTCTTAGAAAATGTTTCATAATTATATTTCTTTTTTAGATTCGTCACTATTGGCGATCCGTTTCCACCGAATGTCACAGTTTCCGACAATGACACAATTTATGAAACTATGAAAGAGCAAATGCTAAAATTTATACCAAATATATCTCGAAGACTTTACATTTTGGATGCGATGCCACGACCAAACGTAGAATATATTGAAAAAATCGTACCAATGCTGAAGGAAAAAGTTCCGATGGAACAAATTGACGTTAGTGATTGAGTGAAAACGTATAATTCAAAAATTATTCCAGAATTTTCTTGTCAACCAAACCTTGTACCAAACAGCGCGTCAGAGATATGCCAAAATCGCCAAAGATTGTGGTCCGACATGTGTTCTCGTAGATTATGACCCGATTTTCTGGAATTCGACTTCTGGAACTTTTCGGTTTTACGACGAGATTGGAAGGTCCTATTTGAGTACTTCAACTCATTTGACACCTCGAGGATTAGAACATATACGAAATGTTTGGACCGATGTTTGTAGAAGGATATTGTGAAGTTTTTTAAATTTTTGTACATATGTCTTGAATAAAGAATTTGTTGTTTTTTTATCAACTATGTATTACATTTCAATTTTTCATTTTATTATTTTCAAAAAATCATTTTTTTGGAAAGTGAAACGATATTTGAAGAATAAAACCTTCAAAAACAATCGCAGAATTTTTAGAGATTCTCCAATTCTACTGGCTGAAAAATTGCAAACTTTCAATTTGTCGAATTTTTCCAAGATTTCTAACCGAAACCTTATTATTTGATGGCGATCTAGGAACAGTACTATTCGCAAATACCGTAACCTCTTCACAGCATAGTGCAGAACGGTAGCAATGGATGGAGAACAAGAAAACAAGAGAATCAATTG</canonical>
            <polymorphic>ACCCTACTCGTTTATCAAGAGCTTGTCGCTCTAATTTTACCAACTTTGAGGAACGAATACGTCAGGAAAAGCCAGATTTTGTTTTTATGTTCACAAGGTGCTCTTAGAAAATGTTTCATAATTATATTTCTTTTTTAGATTCGTCACTATTGGCGATCCGTTTCCACCGAATGTCACAGTTTCCGACAATGACACAATTTATGAAACTATGAAAGAGCAAATGCTAAAATTTATACCAAATATATCTCGAAGACTTTACATTTTGGATGCGATGCCACGACCAAACGTAGAATATATTGAAAAAATCGTACCAATGCTGAAGGAAAAAGTTCCGATGGAACAAATTGACGTTAGTGATTGAGTGAAAACGTATAATTCAAAAATTATTCCAGAATTTTCTTGTCAACCAAACCTTGTACCAAACAGCGCGTCAGAGATATGCCAAAATCGCCAAAGATTGTGGTCCGACATGTGTTCTCGTAGATTATGACCCGATTTTYTGGAATTCGACTTCTGGAACTTTTCGGTTTTACGACGAGATTGGAAGGTCCTATTTGAGTACTTCAACTCATTTGACACCTCGAGGATTAGAACATATACGAAATGTTTGGACCGATGTTTGTAGAAGGATATTGTGAAGTTTTTTAAATTTTTGTACATATGTCTTGAATAAAGAATTTGTTGTTTTTTTATCAACTATGTATTACATTTCAATTTTTCATTTTATTATTTTCAAAAAATCATTTTTTTGGAAAGTGAAACGATATTTGAAGAATAAAACCTTCAAAAACAATCGCAGAATTTTTAGAGATTCTCCAATTCTACTGGCTGAAAAATTGCAAACTTTCAATTTGTCGAATTTTTCCAAGATTTCTAACCGAAACCTTATTATTTGATGGCGATCTAGGAACAGTACTATTCGCAAATACCGTAACCTCTTCACAGCATAGTGCAGAACGGTAGCAATGGATGGAGAACAAGAAAACAAGAGAATCAATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>335 183 151 143 111 47 16 14</canonical_bands>
                <polymorphic_bands>335 183 151 143 125 47 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAATTGACGTTAGTGATTGAG</pcr_primer_p1>
		<pcr_primer_p2>GAGGTGTCAAATGAGTTGAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ACAAATTGACGTTAGTGATTGAGTGAAAACGTATAATTCAAAAATTATTCCAGAATTTTCTTGTCAACCAAACCTTGTACCAAACAGCGCGTCAGAGATATGCCAAAATCGCCAAAGATTGTGGTCCGACATGTGTTCTCGTAGATTATGACCCGATTTTCTGGAATTCGACTTCTGGAACTTTTCGGTTTTACGACGAGATTGGAAGGTCCTATTTGAGTACTTCAACTCATTTGACACCTC</canonical_amplicon>
		<polymorphic_amplicon>ACAAATTGACGTTAGTGATTGAGTGAAAACGTATAATTCAAAAATTATTCCAGAATTTTCTTGTCAACCAAACCTTGTACCAAACAGCGCGTCAGAGATATGCCAAAATCGCCAAAGATTGTGGTCCGACATGTGTTCTCGTAGATTATGACCCGATTTTYTGGAATTCGACTTCTGGAACTTTTCGGTTTTACGACGAGATTGGAAGGTCCTATTTGAGTACTTCAACTCATTTGACACCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28091</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>679880</contig_pos>
        <strand>+</strand>
        <context>AGGGTCGTCG[A/C]TTTTTTTTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTTCTAATCTTTCTGGGAGACGCTGTTCCGACATGCATGAGGGTCGTCG</left_flank>
        <right_flank>TTTTTTTTCCGACGACCCAACAACTATTTCTTCATTTTTTCCCGCTCCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTCCAATTTCTTTCAGAATTTCTGAATTTTCGGACTTTTAAAATTTTGACTTTTTCCGAATTTTAGACTTCCTGAAATTTCTGAAATTTTTCCTGAAAAACCTGGATAAATTTTTTAAAAATTTCAAAAAACGAAATTTTGCTTGCTGGGGGACTAGAAAACTCAAGCTAGTCTCTAATACCTTTCCAGATTTTAAGAATTTTCCTCGAATTTTTTCTTTATTTTTATGTGAATTTTTTTCTCAAAAATTTTAAATTCTCCTACCTGATGATTACAAATCACAATGGCTGGTCCATCGACCTGTGTGATCTCATAATTGTAGACTGTCGTATGGATTCCAGTCCATTTGCTCCAGTAGTAGAACGAGTGGAACACATAGTCGGCGCCCTGGAATTTGAATTTTGGGCTACAACGATGATCTTCGATATATAATTTCGCTTTTTTCTCTTTCTAATCTTTCTGGGAGACGCTGTTCCGACATGCATGAGGGTCGTCGTTTTTTTTTCCGACGACCCAACAACTATTTCTTCATTTTTTCCCGCTCCTTTTGTTCTTTTTTAGTACATTTCTCTCTATTTTTTCCCATTTTCTCCCCCTACCTTTGAACCCAACCACGATGGAATCATTGTGACACAAACTTCCATTCCATGCAGAAGAATTGTGATGTAGAAAAACGAAATTCGCACATAATAGTGAAATTTTGTGGAGAAATTGTAGAAAACTAGAAAGACAGCTAGCACGAATAGCAGAATTGTCCAGAAGTCTGCCATCTGGAATTCCAGAATAAATTTTTTTGCGAATATTGAAAGCGAAAAAAATTGGGTTCAAAGAAGAGAATTGATAAAAAAGCGAAAAAAATGATAAGGAAAAAATTCGGGCTACAATGTACGTTGTTCTGTCTATCCTATTTTTCTCTGCAATCTCTTTTCCGACAACTGTTTTTTTTTCTTCAATTTTTCGAATTGTAAAGTTCGACGCGCCCACAGCCTGATCACGA</canonical>
            <polymorphic>ATTTTCCAATTTCTTTCAGAATTTCTGAATTTTCGGACTTTTAAAATTTTGACTTTTTCCGAATTTTAGACTTCCTGAAATTTCTGAAATTTTTCCTGAAAAACCTGGATAAATTTTTTAAAAATTTCAAAAAACGAAATTTTGCTTGCTGGGGGACTAGAAAACTCAAGCTAGTCTCTAATACCTTTCCAGATTTTAAGAATTTTCCTCGAATTTTTTCTTTATTTTTATGTGAATTTTTTTCTCAAAAATTTTAAATTCTCCTACCTGATGATTACAAATCACAATGGCTGGTCCATCGACCTGTGTGATCTCATAATTGTAGACTGTCGTATGGATTCCAGTCCATTTGCTCCAGTAGTAGAACGAGTGGAACACATAGTCGGCGCCCTGGAATTTGAATTTTGGGCTACAACGATGATCTTCGATATATAATTTCGCTTTTTTCTCTTTCTAATCTTTCTGGGAGACGCTGTTCCGACATGCATGAGGGTCGTCGMTTTTTTTTCCGACGACCCAACAACTATTTCTTCATTTTTTCCCGCTCCTTTTGTTCTTTTTTAGTACATTTCTCTCTATTTTTTCCCATTTTCTCCCCCTACCTTTGAACCCAACCACGATGGAATCATTGTGACACAAACTTCCATTCCATGCAGAAGAATTGTGATGTAGAAAAACGAAATTCGCACATAATAGTGAAATTTTGTGGAGAAATTGTAGAAAACTAGAAAGACAGCTAGCACGAATAGCAGAATTGTCCAGAAGTCTGCCATCTGGAATTCCAGAATAAATTTTTTTGCGAATATTGAAAGCGAAAAAAATTGGGTTCAAAGAAGAGAATTGATAAAAAAGCGAAAAAAATGATAAGGAAAAAATTCGGGCTACAATGTACGTTGTTCTGTCTATCCTATTTTTCTCTGCAATCTCTTTTCCGACAACTGTTTTTTTTTCTTCAATTTTTCGAATTGTAAAGTTCGACGCGCCCACAGCCTGATCACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTTTCTAATCTTTCTGGGAGA</pcr_primer_p1>
		<pcr_primer_p2>ATTTCACTATTATGTGCGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CTCTTTCTAATCTTTCTGGGAGACGCTGTTCCGACATGCATGAGGGTCGTCGTTTTTTTTTCCGACGACCCAACAACTATTTCTTCATTTTTTCCCGCTCCTTTTGTTCTTTTTTAGTACATTTCTCTCTATTTTTTCCCATTTTCTCCCCCTACCTTTGAACCCAACCACGATGGAATCATTGTGACACAAACTTCCATTCCATGCAGAAGAATTGTGATGTAGAAAAACGAAATTCGCACATAATAGTGAAAT</canonical_amplicon>
		<polymorphic_amplicon>CTCTTTCTAATCTTTCTGGGAGACGCTGTTCCGACATGCATGAGGGTCGTCGMTTTTTTTTCCGACGACCCAACAACTATTTCTTCATTTTTTCCCGCTCCTTTTGTTCTTTTTTAGTACATTTCTCTCTATTTTTTCCCATTTTCTCCCCCTACCTTTGAACCCAACCACGATGGAATCATTGTGACACAAACTTCCATTCCATGCAGAAGAATTGTGATGTAGAAAAACGAAATTCGCACATAATAGTGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28092</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>679972</contig_pos>
        <strand>+</strand>
        <context>TTTCYCATTT[C/T]CTCCCCCTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGCTCCTTTTGTTCTTTTTTAGTACATTTCTCTCTATTTTTTCCCATTT</left_flank>
        <right_flank>CTCCCCCTACCTTTGAACCCAACCACGATGGAATCATTGTGACACAAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCTGAAAAACCTGGATAAATTTTTTAAAAATTTCAAAAAACGAAATTTTGCTTGCTGGGGGACTAGAAAACTCAAGCTAGTCTCTAATACCTTTCCAGATTTTAAGAATTTTCCTCGAATTTTTTCTTTATTTTTATGTGAATTTTTTTCTCAAAAATTTTAAATTCTCCTACCTGATGATTACAAATCACAATGGCTGGTCCATCGACCTGTGTGATCTCATAATTGTAGACTGTCGTATGGATTCCAGTCCATTTGCTCCAGTAGTAGAACGAGTGGAACACATAGTCGGCGCCCTGGAATTTGAATTTTGGGCTACAACGATGATCTTCGATATATAATTTCGCTTTTTTCTCTTTCTAATCTTTCTGGGAGACGCTGTTCCGACATGCATGAGGGTCGTCGTTTTTTTTTCCGACGACCCAACAACTATTTCTTCATTTTTTCCCGCTCCTTTTGTTCTTTTTTAGTACATTTCTCTCTATTTTTTCCCATTTTCTCCCCCTACCTTTGAACCCAACCACGATGGAATCATTGTGACACAAACTTCCATTCCATGCAGAAGAATTGTGATGTAGAAAAACGAAATTCGCACATAATAGTGAAATTTTGTGGAGAAATTGTAGAAAACTAGAAAGACAGCTAGCACGAATAGCAGAATTGTCCAGAAGTCTGCCATCTGGAATTCCAGAATAAATTTTTTTGCGAATATTGAAAGCGAAAAAAATTGGGTTCAAAGAAGAGAATTGATAAAAAAGCGAAAAAAATGATAAGGAAAAAATTCGGGCTACAATGTACGTTGTTCTGTCTATCCTATTTTTCTCTGCAATCTCTTTTCCGACAACTGTTTTTTTTTCTTCAATTTTTCGAATTGTAAAGTTCGACGCGCCCACAGCCTGATCACGAGGACGACCTTTTTATTTCTGATCAACTAGAAAGGCGAAAAAAAGCCAATAATTGTCTGAAAACAGTGTATTTTTGTTGTTTTTTGGTTAAAA</canonical>
            <polymorphic>TTCCTGAAAAACCTGGATAAATTTTTTAAAAATTTCAAAAAACGAAATTTTGCTTGCTGGGGGACTAGAAAACTCAAGCTAGTCTCTAATACCTTTCCAGATTTTAAGAATTTTCCTCGAATTTTTTCTTTATTTTTATGTGAATTTTTTTCTCAAAAATTTTAAATTCTCCTACCTGATGATTACAAATCACAATGGCTGGTCCATCGACCTGTGTGATCTCATAATTGTAGACTGTCGTATGGATTCCAGTCCATTTGCTCCAGTAGTAGAACGAGTGGAACACATAGTCGGCGCCCTGGAATTTGAATTTTGGGCTACAACGATGATCTTCGATATATAATTTCGCTTTTTTCTCTTTCTAATCTTTCTGGGAGACGCTGTTCCGACATGCATGAGGGTCGTCGTTTTTTTTTCCGACGACCCAACAACTATTTCTTCATTTTTTCCCGCTCCTTTTGTTCTTTTTTAGTACATTTCTCTCTATTTTTTCCCATTTYCTCCCCCTACCTTTGAACCCAACCACGATGGAATCATTGTGACACAAACTTCCATTCCATGCAGAAGAATTGTGATGTAGAAAAACGAAATTCGCACATAATAGTGAAATTTTGTGGAGAAATTGTAGAAAACTAGAAAGACAGCTAGCACGAATAGCAGAATTGTCCAGAAGTCTGCCATCTGGAATTCCAGAATAAATTTTTTTGCGAATATTGAAAGCGAAAAAAATTGGGTTCAAAGAAGAGAATTGATAAAAAAGCGAAAAAAATGATAAGGAAAAAATTCGGGCTACAATGTACGTTGTTCTGTCTATCCTATTTTTCTCTGCAATCTCTTTTCCGACAACTGTTTTTTTTTCTTCAATTTTTCGAATTGTAAAGTTCGACGCGCCCACAGCCTGATCACGAGGACGACCTTTTTATTTCTGATCAACTAGAAAGGCGAAAAAAAGCCAATAATTGTCTGAAAACAGTGTATTTTTGTTGTTTTTTGGTTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTCTAATCTTTCTGGGAGAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTCACTATTATGTGCGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCTTTCTAATCTTTCTGGGAGACGCTGTTCCGACATGCATGAGGGTCGTCGTTTTTTTTTCCGACGACCCAACAACTATTTCTTCATTTTTTCCCGCTCCTTTTGTTCTTTTTTAGTACATTTCTCTCTATTTTTTCCCATTTTCTCCCCCTACCTTTGAACCCAACCACGATGGAATCATTGTGACACAAACTTCCATTCCATGCAGAAGAATTGTGATGTAGAAAAACGAAATTCGCACATAATAGTGAAAT</canonical_amplicon>
		<polymorphic_amplicon>TCTTTCTAATCTTTCTGGGAGACGCTGTTCCGACATGCATGAGGGTCGTCGTTTTTTTTTCCGACGACCCAACAACTATTTCTTCATTTTTTCCCGCTCCTTTTGTTCTTTTTTAGTACATTTCTCTCTATTTTTTCCCATTTYCTCCCCCTACCTTTGAACCCAACCACGATGGAATCATTGTGACACAAACTTCCATTCCATGCAGAAGAATTGTGATGTAGAAAAACGAAATTCGCACATAATAGTGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28093</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>680108</contig_pos>
        <strand>+</strand>
        <context>TAGAAAACTA[A/G]AAAGACAGCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAAATTCGCACATAATAGTGAAATTTTGTGGAGAAATTGTAGAAAACTA</left_flank>
        <right_flank>AAAGACAGCTAGCACGAATAGCAGAATTGTCCAGAAGTCTGCCATCTGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGTGAATTTTTTTCTCAAAAATTTTAAATTCTCCTACCTGATGATTACAAATCACAATGGCTGGTCCATCGACCTGTGTGATCTCATAATTGTAGACTGTCGTATGGATTCCAGTCCATTTGCTCCAGTAGTAGAACGAGTGGAACACATAGTCGGCGCCCTGGAATTTGAATTTTGGGCTACAACGATGATCTTCGATATATAATTTCGCTTTTTTCTCTTTCTAATCTTTCTGGGAGACGCTGTTCCGACATGCATGAGGGTCGTCGTTTTTTTTTCCGACGACCCAACAACTATTTCTTCATTTTTTCCCGCTCCTTTTGTTCTTTTTTAGTACATTTCTCTCTATTTTTTCCCATTTTCTCCCCCTACCTTTGAACCCAACCACGATGGAATCATTGTGACACAAACTTCCATTCCATGCAGAAGAATTGTGATGTAGAAAAACGAAATTCGCACATAATAGTGAAATTTTGTGGAGAAATTGTAGAAAACTAGAAAGACAGCTAGCACGAATAGCAGAATTGTCCAGAAGTCTGCCATCTGGAATTCCAGAATAAATTTTTTTGCGAATATTGAAAGCGAAAAAAATTGGGTTCAAAGAAGAGAATTGATAAAAAAGCGAAAAAAATGATAAGGAAAAAATTCGGGCTACAATGTACGTTGTTCTGTCTATCCTATTTTTCTCTGCAATCTCTTTTCCGACAACTGTTTTTTTTTCTTCAATTTTTCGAATTGTAAAGTTCGACGCGCCCACAGCCTGATCACGAGGACGACCTTTTTATTTCTGATCAACTAGAAAGGCGAAAAAAAGCCAATAATTGTCTGAAAACAGTGTATTTTTGTTGTTTTTTGGTTAAAAAATCACTGAGAAATCCAGCGTCGTAAAGTCAAATGCATCGGATACACTCCGGTGTTTGCACACTTGCGCACCGTACCACATCGAAAAACGGAGGGAACTTTAAATTCGAGTTTTTATTTGGAAAAAAGCGAAAAAA</canonical>
            <polymorphic>TATGTGAATTTTTTTCTCAAAAATTTTAAATTCTCCTACCTGATGATTACAAATCACAATGGCTGGTCCATCGACCTGTGTGATCTCATAATTGTAGACTGTCGTATGGATTCCAGTCCATTTGCTCCAGTAGTAGAACGAGTGGAACACATAGTCGGCGCCCTGGAATTTGAATTTTGGGCTACAACGATGATCTTCGATATATAATTTCGCTTTTTTCTCTTTCTAATCTTTCTGGGAGACGCTGTTCCGACATGCATGAGGGTCGTCGTTTTTTTTTCCGACGACCCAACAACTATTTCTTCATTTTTTCCCGCTCCTTTTGTTCTTTTTTAGTACATTTCTCTCTATTTTTTCCCATTTTCTCCCCCTACCTTTGAACCCAACCACGATGGAATCATTGTGACACAAACTTCCATTCCATGCAGAAGAATTGTGATGTAGAAAAACGAAATTCGCACATAATAGTGAAATTTTGTGGAGAAATTGTAGAAAACTARAAAGACAGCTAGCACGAATAGCAGAATTGTCCAGAAGTCTGCCATCTGGAATTCCAGAATAAATTTTTTTGCGAATATTGAAAGCGAAAAAAATTGGGTTCAAAGAAGAGAATTGATAAAAAAGCGAAAAAAATGATAAGGAAAAAATTCGGGCTACAATGTACGTTGTTCTGTCTATCCTATTTTTCTCTGCAATCTCTTTTCCGACAACTGTTTTTTTTTCTTCAATTTTTCGAATTGTAAAGTTCGACGCGCCCACAGCCTGATCACGAGGACGACCTTTTTATTTCTGATCAACTAGAAAGGCGAAAAAAAGCCAATAATTGTCTGAAAACAGTGTATTTTTGTTGTTTTTTGGTTAAAAAATCACTGAGAAATCCAGCGTCGTAAAGTCAAATGCATCGGATACACTCCGGTGTTTGCACACTTGCGCACCGTACCACATCGAAAAACGGAGGGAACTTTAAATTCGAGTTTTTATTTGGAAAAAAGCGAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>497 289 202 12</canonical_bands>
                <polymorphic_bands>509 289 202</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACGAAATTCGCACATAATAGT</pcr_primer_p1>
		<pcr_primer_p2>TTGCAGAGAAAAATAGGATAGAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AACGAAATTCGCACATAATAGTGAAATTTTGTGGAGAAATTGTAGAAAACTAGAAAGACAGCTAGCACGAATAGCAGAATTGTCCAGAAGTCTGCCATCTGGAATTCCAGAATAAATTTTTTTGCGAATATTGAAAGCGAAAAAAATTGGGTTCAAAGAAGAGAATTGATAAAAAAGCGAAAAAAATGATAAGGAAAAAATTCGGGCTACAATGTACGTTGTTCTGTCTATCCTATTTTTCTCTGCAA</canonical_amplicon>
		<polymorphic_amplicon>AACGAAATTCGCACATAATAGTGAAATTTTGTGGAGAAATTGTAGAAAACTARAAAGACAGCTAGCACGAATAGCAGAATTGTCCAGAAGTCTGCCATCTGGAATTCCAGAATAAATTTTTTTGCGAATATTGAAAGCGAAAAAAATTGGGTTCAAAGAAGAGAATTGATAAAAAAGCGAAAAAAATGATAAGGAAAAAATTCGGGCTACAATGTACGTTGTTCTGTCTATCCTATTTTTCTCTGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28094</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>681833</contig_pos>
        <strand>+</strand>
        <context>CTAACGAGAT[A/G]AATGTAGAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGTTTTTGGGATGGAGACCTCTTTTAATATTGTAGTTTGCTAACGAGAT</left_flank>
        <right_flank>AATGTAGAGCACCACAGTATACTTGCCCTCTTTGAGCTTAATTATCTCGG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAGTTTTGTTTGCGATGAGTAGTCTAGCTTTCCACAATTACAGTAGGCTTTTGGGATACTGTACCTATCCTAAATTGTGTTTCATTGAACTTTTTAGAGATCTCCGTCATTTTTAATATGGGAGGTATTTGGTATTGAAAAGTGCAAACTTCATGCTGTGAGCCATGGGCACAGGCCTCAATTTTCATTTCCCCCTTTTCCCCCCTCAACTACAGTAACCCTTAAAAGTTCCAAAAGTTCATTTGTATCCATCATCATTATCTGTGTTCTCTTTTCCAAAGTAGTTTCTGTTCTTCAGTTTCCTGTCACATCATCATCATCATTTTCTCCAATTTTGTAACGAACGAAACACACTTTTTTTTCCTTTTTTTTCATGTCAGTTAATAGTTGTACTTTTGCGGAAAAAAAGAAAAAGAAAATCATTCCGTTTCTTTTTCTCGTTTTGTCACGTTTTTGGGATGGAGACCTCTTTTAATATTGTAGTTTGCTAACGAGATAAATGTAGAGCACCACAGTATACTTGCCCTCTTTGAGCTTAATTATCTCGGTTCTTATGAGAGATACCAGACATCTGTCCACTGATAAAATATTGGAGATATTATTATAAACCTTTCATCAGTTGACACATTTTCGTTACCTTTCACAGGAACCGAGATACATTTCTCAAATTTTAAAGTTAAGAGGGCTTACGGTACTTGAACTATGAGATCAATTATCTCAATTTCTGAAAAAGATATCGAAAGGCTGCCAACTAATGAAATGTTGGTGATATTATAATGAATGTTTTATCAGTTGACAAATGTTTTATATCTCTTACAGGAACGGAGATAATTAACACAAATTTAAAAGTTTTTTCTTCCGCTCATTTTCCCATGAAAACGATAAAATGGAGCTCGAAAAAAACGGAAAAAAACGGCGAAATTGGCTCCGAACAATAGAACAATTACATGAAATTTTATATTCAGAGGCTGGGGGAAGAATTGGGAAATTTTGCATGA</canonical>
            <polymorphic>AAGAGTTTTGTTTGCGATGAGTAGTCTAGCTTTCCACAATTACAGTAGGCTTTTGGGATACTGTACCTATCCTAAATTGTGTTTCATTGAACTTTTTAGAGATCTCCGTCATTTTTAATATGGGAGGTATTTGGTATTGAAAAGTGCAAACTTCATGCTGTGAGCCATGGGCACAGGCCTCAATTTTCATTTCCCCCTTTTCCCCCCTCAACTACAGTAACCCTTAAAAGTTCCAAAAGTTCATTTGTATCCATCATCATTATCTGTGTTCTCTTTTCCAAAGTAGTTTCTGTTCTTCAGTTTCCTGTCACATCATCATCATCATTTTCTCCAATTTTGTAACGAACGAAACACACTTTTTTTTCCTTTTTTTTCATGTCAGTTAATAGTTGTACTTTTGCGGAAAAAAAGAAAAAGAAAATCATTCCGTTTCTTTTTCTCGTTTTGTCACGTTTTTGGGATGGAGACCTCTTTTAATATTGTAGTTTGCTAACGAGATRAATGTAGAGCACCACAGTATACTTGCCCTCTTTGAGCTTAATTATCTCGGTTCTTATGAGAGATACCAGACATCTGTCCACTGATAAAATATTGGAGATATTATTATAAACCTTTCATCAGTTGACACATTTTCGTTACCTTTCACAGGAACCGAGATACATTTCTCAAATTTTAAAGTTAAGAGGGCTTACGGTACTTGAACTATGAGATCAATTATCTCAATTTCTGAAAAAGATATCGAAAGGCTGCCAACTAATGAAATGTTGGTGATATTATAATGAATGTTTTATCAGTTGACAAATGTTTTATATCTCTTACAGGAACGGAGATAATTAACACAAATTTAAAAGTTTTTTCTTCCGCTCATTTTCCCATGAAAACGATAAAATGGAGCTCGAAAAAAACGGAAAAAAACGGCGAAATTGGCTCCGAACAATAGAACAATTACATGAAATTTTATATTCAGAGGCTGGGGGAAGAATTGGGAAATTTTGCATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCGTTTTGTCACGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GCTCCATTTTATCGTTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>458</pcr_amplicon_size>
		<canonical_amplicon>TCTCGTTTTGTCACGTTTTTGGGATGGAGACCTCTTTTAATATTGTAGTTTGCTAACGAGATAAATGTAGAGCACCACAGTATACTTGCCCTCTTTGAGCTTAATTATCTCGGTTCTTATGAGAGATACCAGACATCTGTCCACTGATAAAATATTGGAGATATTATTATAAACCTTTCATCAGTTGACACATTTTCGTTACCTTTCACAGGAACCGAGATACATTTCTCAAATTTTAAAGTTAAGAGGGCTTACGGTACTTGAACTATGAGATCAATTATCTCAATTTCTGAAAAAGATATCGAAAGGCTGCCAACTAATGAAATGTTGGTGATATTATAATGAATGTTTTATCAGTTGACAAATGTTTTATATCTCTTACAGGAACGGAGATAATTAACACAAATTTAAAAGTTTTTTCTTCCGCTCATTTTCCCATGAAAACGATAAAATGGAGC</canonical_amplicon>
		<polymorphic_amplicon>TCTCGTTTTGTCACGTTTTTGGGATGGAGACCTCTTTTAATATTGTAGTTTGCTAACGAGATRAATGTAGAGCACCACAGTATACTTGCCCTCTTTGAGCTTAATTATCTCGGTTCTTATGAGAGATACCAGACATCTGTCCACTGATAAAATATTGGAGATATTATTATAAACCTTTCATCAGTTGACACATTTTCGTTACCTTTCACAGGAACCGAGATACATTTCTCAAATTTTAAAGTTAAGAGGGCTTACGGTACTTGAACTATGAGATCAATTATCTCAATTTCTGAAAAAGATATCGAAAGGCTGCCAACTAATGAAATGTTGGTGATATTATAATGAATGTTTTATCAGTTGACAAATGTTTTATATCTCTTACAGGAACGGAGATAATTAACACAAATTTAAAAGTTTTTTCTTCCGCTCATTTTCCCATGAAAACGATAAAATGGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28095</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>701890</contig_pos>
        <strand></strand>
        <context>ctcggttcct[G/A]tgagagacat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACAGATCATAACCCTATGATTGTACTTTGAGCTCAATTATCTCGGTTCCT</left_flank>
        <right_flank>TGAGAGACATCAACAACCTGTCAACTGATAAAATATTTATCATAATATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGGTTACTGTAGTTCCTGAAAAAAGGCCGATATGATTACGGTAGATGAGTTTAGGGTCGAACTCAATAAAAGAGGGTTACTGTAGCTTTCACACTGTGAGGTTACTGTAGTTGTGGCTCCTAGAAGAATTAGTGATAAAATTCGGATGATTGACGAAAAGAAAAGTTACAGTTAGAAGTTTTAAAAACTGAATTCAAGTAAGGTTACTGTAGGTATAGCTCTTGGAAGAGAACCACGACGTAGATTATTGTAAGAAGGAGTTACTGCAGTTCCTGGAGAATTGTCAAGGTGTAGGTTACTGTAGGAAAGAGTTACTGTAATTCCTGTGAAAAGGTGTAGATTACTGTAGTCCCGTGGTTTGGGTTGCTTTCGGCGAGCTTCGAGTCAAGCTCAATAGAAAAGGGTTACTGTAGCTGTGGCTCCTAGAAAAAAATCGTGAAAAATTTAAACAGATCATAACCCTATGATTGTACTTTGAGCTCAATTATCTCGGTTCCTGTGAGAGACATCAACAACCTGTCAACTGATAAAATATTTATCATAATATTTCAAACATTTTTATAGTTAACAAAATTTTGATATCTCTCATAAGAACCGAGATAATTGAGCTCAAATGCACGTATAGGGTGGGCTTCTATTAGAGGAGGACCTACGGTAGTAGCACTTTGAGCTCAATTGTATCACTTTCAGTGAAATATATCAAAAATCTGTCAACTGATGAAATGTTGGTGATATTATGACAAACATTTCATCAGTTAACACACTTTTGATATCTCTCAAAGGAACCGAGATAATTAAGCTCACAGTTACGGTATCAGCTAAACTCGAAAAAACGTATGAATCACTCTAGGTGCGAAATATCGGAATCAGAATTTGTTATTCTGTTTAGTTTTGCAAAAATTTGCAACATAAAATTGTTGATCTGTTTCTTCCATTTTTAGGAATGTTCTTGACATTAATCCTAAAAGTCATCAAACATCAAATCCTTCTTATATATTG</canonical>
            <polymorphic>AAGGTTACTGTAGTTCCTGAAAAAAGGCCGATATGATTACGGTAGATGAGTTTAGGGTCGAACTCAATAAAAGAGGGTTACTGTAGCTTTCACACTGTGAGGTTACTGTAGTTGTGGCTCCTAGAAGAATTAGTGATAAAATTCGGATGATTGACGAAAAGAAAAGTTACAGTTAGAAGTTTTAAAAACTGAATTCAAGTAAGGTTACTGTAGGTATAGCTCTTGGAAGAGAACCACGACGTAGATTATTGTAAGAAGGAGTTACTGCAGTTCCTGGAGAATTGTCAAGGTGTAGGTTACTGTAGGAAAGAGTTACTGTAATTCCTGTGAAAAGGTGTAGATTACTGTAGTCCCGTGGTTTGGGTTGCTTTCGGCGAGCTTCGAGTCAAGCTCAATAGAAAAGGGTTACTGTAGCTGTGGCTCCTAGAAAAAAATCGTGAAAAATTTAAACAGATCATAACCCTATGATTGTACTTTGAGCTCAATTATCTCGGTTCCTRTGAGAGACATCAACAACCTGTCAACTGATAAAATATTTATCATAATATTTCAAACATTTTTATAGTTAACAAAATTTTGATATCTCTCATAAGAACCGAGATAATTGAGCTCAAATGCACGTATAGGGTGGGCTTCTATTAGAGGAGGACCTACGGTAGTAGCACTTTGAGCTCAATTGTATCACTTTCAGTGAAATATATCAAAAATCTGTCAACTGATGAAATGTTGGTGATATTATGACAAACATTTCATCAGTTAACACACTTTTGATATCTCTCAAAGGAACCGAGATAATTAAGCTCACAGTTACGGTATCAGCTAAACTCGAAAAAACGTATGAATCACTCTAGGTGCGAAATATCGGAATCAGAATTTGTTATTCTGTTTAGTTTTGCAAAAATTTGCAACATAAAATTGTTGATCTGTTTCTTCCATTTTTAGGAATGTTCTTGACATTAATCCTAAAAGTCATCAAACATCAAATCCTTCTTATATATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>146 117 101 92 63 62 56 41 40 39 37 34 30 20 20 20 19 17 11 9 9 8 5 2 2</canonical_bands>
                <polymorphic_bands>180 146 101 92 62 56 41 40 39 37 34 30 20 20 20 19 17 11 9 9 8 5 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATCGTGAAAAATTTAAACAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCGAGTTTAGCTGATACC</pcr_primer_p2>
		<pcr_amplicon_size>403</pcr_amplicon_size>
		<canonical_amplicon>AAAATCGTGAAAAATTTAAACAGATCATAACCCTATGATTGTACTTTGAGCTCAATTATCTCGGTTCCTGTGAGAGACATCAACAACCTGTCAACTGATAAAATATTTATCATAATATTTCAAACATTTTTATAGTTAACAAAATTTTGATATCTCTCATAAGAACCGAGATAATTGAGCTCAAATGCACGTATAGGGTGGGCTTCTATTAGAGGAGGACCTACGGTAGTAGCACTTTGAGCTCAATTGTATCACTTTCAGTGAAATATATCAAAAATCTGTCAACTGATGAAATGTTGGTGATATTATGACAAACATTTCATCAGTTAACACACTTTTGATATCTCTCAAAGGAACCGAGATAATTAAGCTCACAGTTACGGTATCAGCTAAACTCGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAATCGTGAAAAATTTAAACAGATCATAACCCTATGATTGTACTTTGAGCTCAATTATCTCGGTTCCTRTGAGAGACATCAACAACCTGTCAACTGATAAAATATTTATCATAATATTTCAAACATTTTTATAGTTAACAAAATTTTGATATCTCTCATAAGAACCGAGATAATTGAGCTCAAATGCACGTATAGGGTGGGCTTCTATTAGAGGAGGACCTACGGTAGTAGCACTTTGAGCTCAATTGTATCACTTTCAGTGAAATATATCAAAAATCTGTCAACTGATGAAATGTTGGTGATATTATGACAAACATTTCATCAGTTAACACACTTTTGATATCTCTCAAAGGAACCGAGATAATTAAGCTCACAGTTACGGTATCAGCTAAACTCGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28096</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>701986</contig_pos>
        <strand></strand>
        <context>ctcataagaa[C/G]cgagataatt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TATTTCAAACATTTTTATAGTTAACAAAATTTTGATATCTCTCATAAGAA</left_flank>
        <right_flank>CGAGATAATTGAGCTCAAATGCACGTATAGGGTGGGCTTCTATTAGAGGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGAGGTTACTGTAGTTGTGGCTCCTAGAAGAATTAGTGATAAAATTCGGATGATTGACGAAAAGAAAAGTTACAGTTAGAAGTTTTAAAAACTGAATTCAAGTAAGGTTACTGTAGGTATAGCTCTTGGAAGAGAACCACGACGTAGATTATTGTAAGAAGGAGTTACTGCAGTTCCTGGAGAATTGTCAAGGTGTAGGTTACTGTAGGAAAGAGTTACTGTAATTCCTGTGAAAAGGTGTAGATTACTGTAGTCCCGTGGTTTGGGTTGCTTTCGGCGAGCTTCGAGTCAAGCTCAATAGAAAAGGGTTACTGTAGCTGTGGCTCCTAGAAAAAAATCGTGAAAAATTTAAACAGATCATAACCCTATGATTGTACTTTGAGCTCAATTATCTCGGTTCCTGTGAGAGACATCAACAACCTGTCAACTGATAAAATATTTATCATAATATTTCAAACATTTTTATAGTTAACAAAATTTTGATATCTCTCATAAGAACCGAGATAATTGAGCTCAAATGCACGTATAGGGTGGGCTTCTATTAGAGGAGGACCTACGGTAGTAGCACTTTGAGCTCAATTGTATCACTTTCAGTGAAATATATCAAAAATCTGTCAACTGATGAAATGTTGGTGATATTATGACAAACATTTCATCAGTTAACACACTTTTGATATCTCTCAAAGGAACCGAGATAATTAAGCTCACAGTTACGGTATCAGCTAAACTCGAAAAAACGTATGAATCACTCTAGGTGCGAAATATCGGAATCAGAATTTGTTATTCTGTTTAGTTTTGCAAAAATTTGCAACATAAAATTGTTGATCTGTTTCTTCCATTTTTAGGAATGTTCTTGACATTAATCCTAAAAGTCATCAAACATCAAATCCTTCTTATATATTGATGTGATGTGTAATATTCGTGTACTCATGACAACTCAATGAGCTTCAAAGATTATAGATTTTGTAGTCTGAATTTGGGAGCTCCACATGATATTAT</canonical>
            <polymorphic>GTGAGGTTACTGTAGTTGTGGCTCCTAGAAGAATTAGTGATAAAATTCGGATGATTGACGAAAAGAAAAGTTACAGTTAGAAGTTTTAAAAACTGAATTCAAGTAAGGTTACTGTAGGTATAGCTCTTGGAAGAGAACCACGACGTAGATTATTGTAAGAAGGAGTTACTGCAGTTCCTGGAGAATTGTCAAGGTGTAGGTTACTGTAGGAAAGAGTTACTGTAATTCCTGTGAAAAGGTGTAGATTACTGTAGTCCCGTGGTTTGGGTTGCTTTCGGCGAGCTTCGAGTCAAGCTCAATAGAAAAGGGTTACTGTAGCTGTGGCTCCTAGAAAAAAATCGTGAAAAATTTAAACAGATCATAACCCTATGATTGTACTTTGAGCTCAATTATCTCGGTTCCTGTGAGAGACATCAACAACCTGTCAACTGATAAAATATTTATCATAATATTTCAAACATTTTTATAGTTAACAAAATTTTGATATCTCTCATAAGAASCGAGATAATTGAGCTCAAATGCACGTATAGGGTGGGCTTCTATTAGAGGAGGACCTACGGTAGTAGCACTTTGAGCTCAATTGTATCACTTTCAGTGAAATATATCAAAAATCTGTCAACTGATGAAATGTTGGTGATATTATGACAAACATTTCATCAGTTAACACACTTTTGATATCTCTCAAAGGAACCGAGATAATTAAGCTCACAGTTACGGTATCAGCTAAACTCGAAAAAACGTATGAATCACTCTAGGTGCGAAATATCGGAATCAGAATTTGTTATTCTGTTTAGTTTTGCAAAAATTTGCAACATAAAATTGTTGATCTGTTTCTTCCATTTTTAGGAATGTTCTTGACATTAATCCTAAAAGTCATCAAACATCAAATCCTTCTTATATATTGATGTGATGTGTAATATTCGTGTACTCATGACAACTCAATGAGCTTCAAAGATTATAGATTTTGTAGTCTGAATTTGGGAGCTCCACATGATATTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCGTGAAAAATTTAAACAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCGAGTTTAGCTGATACC</pcr_primer_p2>
		<pcr_amplicon_size>403</pcr_amplicon_size>
		<canonical_amplicon>AAAATCGTGAAAAATTTAAACAGATCATAACCCTATGATTGTACTTTGAGCTCAATTATCTCGGTTCCTGTGAGAGACATCAACAACCTGTCAACTGATAAAATATTTATCATAATATTTCAAACATTTTTATAGTTAACAAAATTTTGATATCTCTCATAAGAACCGAGATAATTGAGCTCAAATGCACGTATAGGGTGGGCTTCTATTAGAGGAGGACCTACGGTAGTAGCACTTTGAGCTCAATTGTATCACTTTCAGTGAAATATATCAAAAATCTGTCAACTGATGAAATGTTGGTGATATTATGACAAACATTTCATCAGTTAACACACTTTTGATATCTCTCAAAGGAACCGAGATAATTAAGCTCACAGTTACGGTATCAGCTAAACTCGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAATCGTGAAAAATTTAAACAGATCATAACCCTATGATTGTACTTTGAGCTCAATTATCTCGGTTCCTGTGAGAGACATCAACAACCTGTCAACTGATAAAATATTTATCATAATATTTCAAACATTTTTATAGTTAACAAAATTTTGATATCTCTCATAAGAASCGAGATAATTGAGCTCAAATGCACGTATAGGGTGGGCTTCTATTAGAGGAGGACCTACGGTAGTAGCACTTTGAGCTCAATTGTATCACTTTCAGTGAAATATATCAAAAATCTGTCAACTGATGAAATGTTGGTGATATTATGACAAACATTTCATCAGTTAACACACTTTTGATATCTCTCAAAGGAACCGAGATAATTAAGCTCACAGTTACGGTATCAGCTAAACTCGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28097</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>702037</contig_pos>
        <strand>+</strand>
        <context>tattagaggA[C/G]GACCTACGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGAGATAATTGAGCTCAAATGCACGTATAGGGTGGGCTTCTATTAGAGGA</left_flank>
        <right_flank>GACCTACGGTAGTAGCACTTTGAGCTCAATTGTATCACTTTCAGTGAAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATTGACGAAAAGAAAAGTTACAGTTAGAAGTTTTAAAAACTGAATTCAAGTAAGGTTACTGTAGGTATAGCTCTTGGAAGAGAACCACGACGTAGATTATTGTAAGAAGGAGTTACTGCAGTTCCTGGAGAATTGTCAAGGTGTAGGTTACTGTAGGAAAGAGTTACTGTAATTCCTGTGAAAAGGTGTAGATTACTGTAGTCCCGTGGTTTGGGTTGCTTTCGGCGAGCTTCGAGTCAAGCTCAATAGAAAAGGGTTACTGTAGCTGTGGCTCCTAGAAAAAAATCGTGAAAAATTTAAACAGATCATAACCCTATGATTGTACTTTGAGCTCAATTATCTCGGTTCCTGTGAGAGACATCAACAACCTGTCAACTGATAAAATATTTATCATAATATTTCAAACATTTTTATAGTTAACAAAATTTTGATATCTCTCATAAGAACCGAGATAATTGAGCTCAAATGCACGTATAGGGTGGGCTTCTATTAGAGGAGGACCTACGGTAGTAGCACTTTGAGCTCAATTGTATCACTTTCAGTGAAATATATCAAAAATCTGTCAACTGATGAAATGTTGGTGATATTATGACAAACATTTCATCAGTTAACACACTTTTGATATCTCTCAAAGGAACCGAGATAATTAAGCTCACAGTTACGGTATCAGCTAAACTCGAAAAAACGTATGAATCACTCTAGGTGCGAAATATCGGAATCAGAATTTGTTATTCTGTTTAGTTTTGCAAAAATTTGCAACATAAAATTGTTGATCTGTTTCTTCCATTTTTAGGAATGTTCTTGACATTAATCCTAAAAGTCATCAAACATCAAATCCTTCTTATATATTGATGTGATGTGTAATATTCGTGTACTCATGACAACTCAATGAGCTTCAAAGATTATAGATTTTGTAGTCTGAATTTGGGAGCTCCACATGATATTATATGACTCTGATTCCTCCAACTCATCCCGAAATTGCAGATCCACGCGAGTCA</canonical>
            <polymorphic>TGATTGACGAAAAGAAAAGTTACAGTTAGAAGTTTTAAAAACTGAATTCAAGTAAGGTTACTGTAGGTATAGCTCTTGGAAGAGAACCACGACGTAGATTATTGTAAGAAGGAGTTACTGCAGTTCCTGGAGAATTGTCAAGGTGTAGGTTACTGTAGGAAAGAGTTACTGTAATTCCTGTGAAAAGGTGTAGATTACTGTAGTCCCGTGGTTTGGGTTGCTTTCGGCGAGCTTCGAGTCAAGCTCAATAGAAAAGGGTTACTGTAGCTGTGGCTCCTAGAAAAAAATCGTGAAAAATTTAAACAGATCATAACCCTATGATTGTACTTTGAGCTCAATTATCTCGGTTCCTGTGAGAGACATCAACAACCTGTCAACTGATAAAATATTTATCATAATATTTCAAACATTTTTATAGTTAACAAAATTTTGATATCTCTCATAAGAACCGAGATAATTGAGCTCAAATGCACGTATAGGGTGGGCTTCTATTAGAGGASGACCTACGGTAGTAGCACTTTGAGCTCAATTGTATCACTTTCAGTGAAATATATCAAAAATCTGTCAACTGATGAAATGTTGGTGATATTATGACAAACATTTCATCAGTTAACACACTTTTGATATCTCTCAAAGGAACCGAGATAATTAAGCTCACAGTTACGGTATCAGCTAAACTCGAAAAAACGTATGAATCACTCTAGGTGCGAAATATCGGAATCAGAATTTGTTATTCTGTTTAGTTTTGCAAAAATTTGCAACATAAAATTGTTGATCTGTTTCTTCCATTTTTAGGAATGTTCTTGACATTAATCCTAAAAGTCATCAAACATCAAATCCTTCTTATATATTGATGTGATGTGTAATATTCGTGTACTCATGACAACTCAATGAGCTTCAAAGATTATAGATTTTGTAGTCTGAATTTGGGAGCTCCACATGATATTATATGACTCTGATTCCTCCAACTCATCCCGAAATTGCAGATCCACGCGAGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AGGWCCT</site>
                <isoschizomers>
                    <enzyme>Sse8647I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATCGTGAAAAATTTAAACAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCGAGTTTAGCTGATACC</pcr_primer_p2>
		<pcr_amplicon_size>403</pcr_amplicon_size>
		<canonical_amplicon>AAAATCGTGAAAAATTTAAACAGATCATAACCCTATGATTGTACTTTGAGCTCAATTATCTCGGTTCCTGTGAGAGACATCAACAACCTGTCAACTGATAAAATATTTATCATAATATTTCAAACATTTTTATAGTTAACAAAATTTTGATATCTCTCATAAGAACCGAGATAATTGAGCTCAAATGCACGTATAGGGTGGGCTTCTATTAGAGGAGGACCTACGGTAGTAGCACTTTGAGCTCAATTGTATCACTTTCAGTGAAATATATCAAAAATCTGTCAACTGATGAAATGTTGGTGATATTATGACAAACATTTCATCAGTTAACACACTTTTGATATCTCTCAAAGGAACCGAGATAATTAAGCTCACAGTTACGGTATCAGCTAAACTCGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAATCGTGAAAAATTTAAACAGATCATAACCCTATGATTGTACTTTGAGCTCAATTATCTCGGTTCCTGTGAGAGACATCAACAACCTGTCAACTGATAAAATATTTATCATAATATTTCAAACATTTTTATAGTTAACAAAATTTTGATATCTCTCATAAGAACCGAGATAATTGAGCTCAAATGCACGTATAGGGTGGGCTTCTATTAGAGGASGACCTACGGTAGTAGCACTTTGAGCTCAATTGTATCACTTTCAGTGAAATATATCAAAAATCTGTCAACTGATGAAATGTTGGTGATATTATGACAAACATTTCATCAGTTAACACACTTTTGATATCTCTCAAAGGAACCGAGATAATTAAGCTCACAGTTACGGTATCAGCTAAACTCGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28098</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>702141</contig_pos>
        <strand></strand>
        <context>acaaacattt[C/T]atcagttaac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAAAAATCTGTCAACTGATGAAATGTTGGTGATATTATGACAAACATTT</left_flank>
        <right_flank>ATCAGTTAACACACTTTTGATATCTCTCAAAGGAACCGAGATAATTAAGC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGAAGGAGTTACTGCAGTTCCTGGAGAATTGTCAAGGTGTAGGTTACTGTAGGAAAGAGTTACTGTAATTCCTGTGAAAAGGTGTAGATTACTGTAGTCCCGTGGTTTGGGTTGCTTTCGGCGAGCTTCGAGTCAAGCTCAATAGAAAAGGGTTACTGTAGCTGTGGCTCCTAGAAAAAAATCGTGAAAAATTTAAACAGATCATAACCCTATGATTGTACTTTGAGCTCAATTATCTCGGTTCCTGTGAGAGACATCAACAACCTGTCAACTGATAAAATATTTATCATAATATTTCAAACATTTTTATAGTTAACAAAATTTTGATATCTCTCATAAGAACCGAGATAATTGAGCTCAAATGCACGTATAGGGTGGGCTTCTATTAGAGGAGGACCTACGGTAGTAGCACTTTGAGCTCAATTGTATCACTTTCAGTGAAATATATCAAAAATCTGTCAACTGATGAAATGTTGGTGATATTATGACAAACATTTCATCAGTTAACACACTTTTGATATCTCTCAAAGGAACCGAGATAATTAAGCTCACAGTTACGGTATCAGCTAAACTCGAAAAAACGTATGAATCACTCTAGGTGCGAAATATCGGAATCAGAATTTGTTATTCTGTTTAGTTTTGCAAAAATTTGCAACATAAAATTGTTGATCTGTTTCTTCCATTTTTAGGAATGTTCTTGACATTAATCCTAAAAGTCATCAAACATCAAATCCTTCTTATATATTGATGTGATGTGTAATATTCGTGTACTCATGACAACTCAATGAGCTTCAAAGATTATAGATTTTGTAGTCTGAATTTGGGAGCTCCACATGATATTATATGACTCTGATTCCTCCAACTCATCCCGAAATTGCAGATCCACGCGAGTCATTGAGACGCGGCCTATATTATACTATGGAACATCCGCCACCAGTCACCGCGAATCCAGCATGGAAGAGAGATTTGGATGAGACCGAAAGGTTTGTTATTCTTAC</canonical>
            <polymorphic>TAAGAAGGAGTTACTGCAGTTCCTGGAGAATTGTCAAGGTGTAGGTTACTGTAGGAAAGAGTTACTGTAATTCCTGTGAAAAGGTGTAGATTACTGTAGTCCCGTGGTTTGGGTTGCTTTCGGCGAGCTTCGAGTCAAGCTCAATAGAAAAGGGTTACTGTAGCTGTGGCTCCTAGAAAAAAATCGTGAAAAATTTAAACAGATCATAACCCTATGATTGTACTTTGAGCTCAATTATCTCGGTTCCTGTGAGAGACATCAACAACCTGTCAACTGATAAAATATTTATCATAATATTTCAAACATTTTTATAGTTAACAAAATTTTGATATCTCTCATAAGAACCGAGATAATTGAGCTCAAATGCACGTATAGGGTGGGCTTCTATTAGAGGAGGACCTACGGTAGTAGCACTTTGAGCTCAATTGTATCACTTTCAGTGAAATATATCAAAAATCTGTCAACTGATGAAATGTTGGTGATATTATGACAAACATTTYATCAGTTAACACACTTTTGATATCTCTCAAAGGAACCGAGATAATTAAGCTCACAGTTACGGTATCAGCTAAACTCGAAAAAACGTATGAATCACTCTAGGTGCGAAATATCGGAATCAGAATTTGTTATTCTGTTTAGTTTTGCAAAAATTTGCAACATAAAATTGTTGATCTGTTTCTTCCATTTTTAGGAATGTTCTTGACATTAATCCTAAAAGTCATCAAACATCAAATCCTTCTTATATATTGATGTGATGTGTAATATTCGTGTACTCATGACAACTCAATGAGCTTCAAAGATTATAGATTTTGTAGTCTGAATTTGGGAGCTCCACATGATATTATATGACTCTGATTCCTCCAACTCATCCCGAAATTGCAGATCCACGCGAGTCATTGAGACGCGGCCTATATTATACTATGGAACATCCGCCACCAGTCACCGCGAATCCAGCATGGAAGAGAGATTTGGATGAGACCGAAAGGTTTGTTATTCTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCGTGAAAAATTTAAACAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCGAGTTTAGCTGATACC</pcr_primer_p2>
		<pcr_amplicon_size>403</pcr_amplicon_size>
		<canonical_amplicon>AAAATCGTGAAAAATTTAAACAGATCATAACCCTATGATTGTACTTTGAGCTCAATTATCTCGGTTCCTGTGAGAGACATCAACAACCTGTCAACTGATAAAATATTTATCATAATATTTCAAACATTTTTATAGTTAACAAAATTTTGATATCTCTCATAAGAACCGAGATAATTGAGCTCAAATGCACGTATAGGGTGGGCTTCTATTAGAGGAGGACCTACGGTAGTAGCACTTTGAGCTCAATTGTATCACTTTCAGTGAAATATATCAAAAATCTGTCAACTGATGAAATGTTGGTGATATTATGACAAACATTTCATCAGTTAACACACTTTTGATATCTCTCAAAGGAACCGAGATAATTAAGCTCACAGTTACGGTATCAGCTAAACTCGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAATCGTGAAAAATTTAAACAGATCATAACCCTATGATTGTACTTTGAGCTCAATTATCTCGGTTCCTGTGAGAGACATCAACAACCTGTCAACTGATAAAATATTTATCATAATATTTCAAACATTTTTATAGTTAACAAAATTTTGATATCTCTCATAAGAACCGAGATAATTGAGCTCAAATGCACGTATAGGGTGGGCTTCTATTAGAGGAGGACCTACGGTAGTAGCACTTTGAGCTCAATTGTATCACTTTCAGTGAAATATATCAAAAATCTGTCAACTGATGAAATGTTGGTGATATTATGACAAACATTTYATCAGTTAACACACTTTTGATATCTCTCAAAGGAACCGAGATAATTAAGCTCACAGTTACGGTATCAGCTAAACTCGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28099</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>702250</contig_pos>
        <strand></strand>
        <context>AGGTGCGAAA[T/C]ATCGGAATCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACGGTATCAGCTAAACTCGAAAAAACGTATGAATCACTCTAGGTGCGAAA</left_flank>
        <right_flank>ATCGGAATCAGAATTTGTTATTCTGTTTAGTTTTGCAAAAATTTGCAACA</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGTTGCTTTCGGCGAGCTTCGAGTCAAGCTCAATAGAAAAGGGTTACTGTAGCTGTGGCTCCTAGAAAAAAATCGTGAAAAATTTAAACAGATCATAACCCTATGATTGTACTTTGAGCTCAATTATCTCGGTTCCTGTGAGAGACATCAACAACCTGTCAACTGATAAAATATTTATCATAATATTTCAAACATTTTTATAGTTAACAAAATTTTGATATCTCTCATAAGAACCGAGATAATTGAGCTCAAATGCACGTATAGGGTGGGCTTCTATTAGAGGAGGACCTACGGTAGTAGCACTTTGAGCTCAATTGTATCACTTTCAGTGAAATATATCAAAAATCTGTCAACTGATGAAATGTTGGTGATATTATGACAAACATTTCATCAGTTAACACACTTTTGATATCTCTCAAAGGAACCGAGATAATTAAGCTCACAGTTACGGTATCAGCTAAACTCGAAAAAACGTATGAATCACTCTAGGTGCGAAATATCGGAATCAGAATTTGTTATTCTGTTTAGTTTTGCAAAAATTTGCAACATAAAATTGTTGATCTGTTTCTTCCATTTTTAGGAATGTTCTTGACATTAATCCTAAAAGTCATCAAACATCAAATCCTTCTTATATATTGATGTGATGTGTAATATTCGTGTACTCATGACAACTCAATGAGCTTCAAAGATTATAGATTTTGTAGTCTGAATTTGGGAGCTCCACATGATATTATATGACTCTGATTCCTCCAACTCATCCCGAAATTGCAGATCCACGCGAGTCATTGAGACGCGGCCTATATTATACTATGGAACATCCGCCACCAGTCACCGCGAATCCAGCATGGAAGAGAGATTTGGATGAGACCGAAAGGTTTGTTATTCTTACAGCGTTTTTTATTGCATCCCCCGATCTGACAGCTGAAGCCATCTGTTGCCCTCAATCTTAACCACAACAGCCCATTGGGTCCTGAGATTTATGTTATTATCACTTCGCT</canonical>
            <polymorphic>TGGGTTGCTTTCGGCGAGCTTCGAGTCAAGCTCAATAGAAAAGGGTTACTGTAGCTGTGGCTCCTAGAAAAAAATCGTGAAAAATTTAAACAGATCATAACCCTATGATTGTACTTTGAGCTCAATTATCTCGGTTCCTGTGAGAGACATCAACAACCTGTCAACTGATAAAATATTTATCATAATATTTCAAACATTTTTATAGTTAACAAAATTTTGATATCTCTCATAAGAACCGAGATAATTGAGCTCAAATGCACGTATAGGGTGGGCTTCTATTAGAGGAGGACCTACGGTAGTAGCACTTTGAGCTCAATTGTATCACTTTCAGTGAAATATATCAAAAATCTGTCAACTGATGAAATGTTGGTGATATTATGACAAACATTTCATCAGTTAACACACTTTTGATATCTCTCAAAGGAACCGAGATAATTAAGCTCACAGTTACGGTATCAGCTAAACTCGAAAAAACGTATGAATCACTCTAGGTGCGAAAYATCGGAATCAGAATTTGTTATTCTGTTTAGTTTTGCAAAAATTTGCAACATAAAATTGTTGATCTGTTTCTTCCATTTTTAGGAATGTTCTTGACATTAATCCTAAAAGTCATCAAACATCAAATCCTTCTTATATATTGATGTGATGTGTAATATTCGTGTACTCATGACAACTCAATGAGCTTCAAAGATTATAGATTTTGTAGTCTGAATTTGGGAGCTCCACATGATATTATATGACTCTGATTCCTCCAACTCATCCCGAAATTGCAGATCCACGCGAGTCATTGAGACGCGGCCTATATTATACTATGGAACATCCGCCACCAGTCACCGCGAATCCAGCATGGAAGAGAGATTTGGATGAGACCGAAAGGTTTGTTATTCTTACAGCGTTTTTTATTGCATCCCCCGATCTGACAGCTGAAGCCATCTGTTGCCCTCAATCTTAACCACAACAGCCCATTGGGTCCTGAGATTTATGTTATTATCACTTCGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCGTGAAAAATTTAAACAG</pcr_primer_p1>
		<pcr_primer_p2>GGAAGAAACAGATCAACAATTT</pcr_primer_p2>
		<pcr_amplicon_size>504</pcr_amplicon_size>
		<canonical_amplicon>AAAATCGTGAAAAATTTAAACAGATCATAACCCTATGATTGTACTTTGAGCTCAATTATCTCGGTTCCTGTGAGAGACATCAACAACCTGTCAACTGATAAAATATTTATCATAATATTTCAAACATTTTTATAGTTAACAAAATTTTGATATCTCTCATAAGAACCGAGATAATTGAGCTCAAATGCACGTATAGGGTGGGCTTCTATTAGAGGAGGACCTACGGTAGTAGCACTTTGAGCTCAATTGTATCACTTTCAGTGAAATATATCAAAAATCTGTCAACTGATGAAATGTTGGTGATATTATGACAAACATTTCATCAGTTAACACACTTTTGATATCTCTCAAAGGAACCGAGATAATTAAGCTCACAGTTACGGTATCAGCTAAACTCGAAAAAACGTATGAATCACTCTAGGTGCGAAATATCGGAATCAGAATTTGTTATTCTGTTTAGTTTTGCAAAAATTTGCAACATAAAATTGTTGATCTGTTTCTTCC</canonical_amplicon>
		<polymorphic_amplicon>AAAATCGTGAAAAATTTAAACAGATCATAACCCTATGATTGTACTTTGAGCTCAATTATCTCGGTTCCTGTGAGAGACATCAACAACCTGTCAACTGATAAAATATTTATCATAATATTTCAAACATTTTTATAGTTAACAAAATTTTGATATCTCTCATAAGAACCGAGATAATTGAGCTCAAATGCACGTATAGGGTGGGCTTCTATTAGAGGAGGACCTACGGTAGTAGCACTTTGAGCTCAATTGTATCACTTTCAGTGAAATATATCAAAAATCTGTCAACTGATGAAATGTTGGTGATATTATGACAAACATTTCATCAGTTAACACACTTTTGATATCTCTCAAAGGAACCGAGATAATTAAGCTCACAGTTACGGTATCAGCTAAACTCGAAAAAACGTATGAATCACTCTAGGTGCGAAAYATCGGAATCAGAATTTGTTATTCTGTTTAGTTTTGCAAAAATTTGCAACATAAAATTGTTGATCTGTTTCTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28100</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>703880</contig_pos>
        <strand>+</strand>
        <context>TTATAGAGCA[A/T]AGTTTAACCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGCCTGAACACGGACAGAGAGCCTCAAAATATGACTCGGCTTATAGAGCA</left_flank>
        <right_flank>AGTTTAACCTCCAAATCGTGACAACAACAATCTACCGTATCCTTGATGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGTTTACGGTAGTTTACTTTGTGAGTCTGAAAAATGTACTAGATTTAGCCTGATGTGTTTGAAAGTTTTCAGATTTATGAAACGAAAATAGGGTTTCAATTTTGTAGTTGACAAGTTTTTTGTGCGAATTCGCCTGAAGCTGGTAACTAACGAAATGGGAAACATTTCAGAATTTTGGACGAATTCAGCGTTGCGACACTTTCCAGTTATTCATCTCATTTGGATGGATTTCTACGAAAAATTGTCTACTGAAACATTGAAGCCCTATTTTTTTTCTATTAACAATCTACAAAGATCTGTTTCAGAAAAGTTAAGAGAGGGTAACATGAGAAAATAAGTTGCTTGAAACTCTGTTCATAATAGCCCCTCGAGGAGTCAAACTTTTGGGCCCACCGTTTGCGGTGCCGCGTTGCTACCATCTGAGCTACGGTAGGAGAAGTAGCGCCACCGCCTGAACACGGACAGAGAGCCTCAAAATATGACTCGGCTTATAGAGCAAAGTTTAACCTCCAAATCGTGACAACAACAATCTACCGTATCCTTGATGACGTGGATCCTGTCCTTGATCTATTCCCAACCACTTCCACACACCCCATTCTCTCGATAATTGACCACCCAAAACTCGCCTCTTCATTCATCCATACAACATGTACACAGAAATACACAATTTGATTCTTTTTCTCTCTCCGTTTTTTGTGTACATTTTGTCAGGAAAACTACTGGGGGTGTCTATAAAGAGAAGATACTTCCCTACTTTTTCTTCATTCCAATATTTTCACAAAATTAAGACCACAATCGTATTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGAACGAAAAAGAGATCGTGGGATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATTATAATGTTTTCCCCCTTTCACCACGATGATTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAATTTAGGAATAAACAAG</canonical>
            <polymorphic>GCGTTTACGGTAGTTTACTTTGTGAGTCTGAAAAATGTACTAGATTTAGCCTGATGTGTTTGAAAGTTTTCAGATTTATGAAACGAAAATAGGGTTTCAATTTTGTAGTTGACAAGTTTTTTGTGCGAATTCGCCTGAAGCTGGTAACTAACGAAATGGGAAACATTTCAGAATTTTGGACGAATTCAGCGTTGCGACACTTTCCAGTTATTCATCTCATTTGGATGGATTTCTACGAAAAATTGTCTACTGAAACATTGAAGCCCTATTTTTTTTCTATTAACAATCTACAAAGATCTGTTTCAGAAAAGTTAAGAGAGGGTAACATGAGAAAATAAGTTGCTTGAAACTCTGTTCATAATAGCCCCTCGAGGAGTCAAACTTTTGGGCCCACCGTTTGCGGTGCCGCGTTGCTACCATCTGAGCTACGGTAGGAGAAGTAGCGCCACCGCCTGAACACGGACAGAGAGCCTCAAAATATGACTCGGCTTATAGAGCAWAGTTTAACCTCCAAATCGTGACAACAACAATCTACCGTATCCTTGATGACGTGGATCCTGTCCTTGATCTATTCCCAACCACTTCCACACACCCCATTCTCTCGATAATTGACCACCCAAAACTCGCCTCTTCATTCATCCATACAACATGTACACAGAAATACACAATTTGATTCTTTTTCTCTCTCCGTTTTTTGTGTACATTTTGTCAGGAAAACTACTGGGGGTGTCTATAAAGAGAAGATACTTCCCTACTTTTTCTTCATTCCAATATTTTCACAAAATTAAGACCACAATCGTATTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGAACGAAAAAGAGATCGTGGGATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATTATAATGTTTTCCCCCTTTCACCACGATGATTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAATTTAGGAATAAACAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAGAAAATAAGTTGCTTGAAA</pcr_primer_p1>
		<pcr_primer_p2>GGAATAGATCAAGGACAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGAGAAAATAAGTTGCTTGAAACTCTGTTCATAATAGCCCCTCGAGGAGTCAAACTTTTGGGCCCACCGTTTGCGGTGCCGCGTTGCTACCATCTGAGCTACGGTAGGAGAAGTAGCGCCACCGCCTGAACACGGACAGAGAGCCTCAAAATATGACTCGGCTTATAGAGCAAAGTTTAACCTCCAAATCGTGACAACAACAATCTACCGTATCCTTGATGACGTGGATCCTGTCCTTGATCTATTCC</canonical_amplicon>
		<polymorphic_amplicon>ATGAGAAAATAAGTTGCTTGAAACTCTGTTCATAATAGCCCCTCGAGGAGTCAAACTTTTGGGCCCACCGTTTGCGGTGCCGCGTTGCTACCATCTGAGCTACGGTAGGAGAAGTAGCGCCACCGCCTGAACACGGACAGAGAGCCTCAAAATATGACTCGGCTTATAGAGCAWAGTTTAACCTCCAAATCGTGACAACAACAATCTACCGTATCCTTGATGACGTGGATCCTGTCCTTGATCTATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28101</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>703891</contig_pos>
        <strand>+</strand>
        <context>AGTTTAACCT[C/T]CARATCGTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGACAGAGAGCCTCAAAATATGACTCGGCTTATAGAGCAAAGTTTAACCT</left_flank>
        <right_flank>CAAATCGTGACAACAACAATCTACCGTATCCTTGATGACGTGGATCCTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTTACTTTGTGAGTCTGAAAAATGTACTAGATTTAGCCTGATGTGTTTGAAAGTTTTCAGATTTATGAAACGAAAATAGGGTTTCAATTTTGTAGTTGACAAGTTTTTTGTGCGAATTCGCCTGAAGCTGGTAACTAACGAAATGGGAAACATTTCAGAATTTTGGACGAATTCAGCGTTGCGACACTTTCCAGTTATTCATCTCATTTGGATGGATTTCTACGAAAAATTGTCTACTGAAACATTGAAGCCCTATTTTTTTTCTATTAACAATCTACAAAGATCTGTTTCAGAAAAGTTAAGAGAGGGTAACATGAGAAAATAAGTTGCTTGAAACTCTGTTCATAATAGCCCCTCGAGGAGTCAAACTTTTGGGCCCACCGTTTGCGGTGCCGCGTTGCTACCATCTGAGCTACGGTAGGAGAAGTAGCGCCACCGCCTGAACACGGACAGAGAGCCTCAAAATATGACTCGGCTTATAGAGCAAAGTTTAACCTCCAAATCGTGACAACAACAATCTACCGTATCCTTGATGACGTGGATCCTGTCCTTGATCTATTCCCAACCACTTCCACACACCCCATTCTCTCGATAATTGACCACCCAAAACTCGCCTCTTCATTCATCCATACAACATGTACACAGAAATACACAATTTGATTCTTTTTCTCTCTCCGTTTTTTGTGTACATTTTGTCAGGAAAACTACTGGGGGTGTCTATAAAGAGAAGATACTTCCCTACTTTTTCTTCATTCCAATATTTTCACAAAATTAAGACCACAATCGTATTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGAACGAAAAAGAGATCGTGGGATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATTATAATGTTTTCCCCCTTTCACCACGATGATTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAATTTAGGAATAAACAAGGAGTCTTCTAG</canonical>
            <polymorphic>AGTTTACTTTGTGAGTCTGAAAAATGTACTAGATTTAGCCTGATGTGTTTGAAAGTTTTCAGATTTATGAAACGAAAATAGGGTTTCAATTTTGTAGTTGACAAGTTTTTTGTGCGAATTCGCCTGAAGCTGGTAACTAACGAAATGGGAAACATTTCAGAATTTTGGACGAATTCAGCGTTGCGACACTTTCCAGTTATTCATCTCATTTGGATGGATTTCTACGAAAAATTGTCTACTGAAACATTGAAGCCCTATTTTTTTTCTATTAACAATCTACAAAGATCTGTTTCAGAAAAGTTAAGAGAGGGTAACATGAGAAAATAAGTTGCTTGAAACTCTGTTCATAATAGCCCCTCGAGGAGTCAAACTTTTGGGCCCACCGTTTGCGGTGCCGCGTTGCTACCATCTGAGCTACGGTAGGAGAAGTAGCGCCACCGCCTGAACACGGACAGAGAGCCTCAAAATATGACTCGGCTTATAGAGCAAAGTTTAACCTYCAAATCGTGACAACAACAATCTACCGTATCCTTGATGACGTGGATCCTGTCCTTGATCTATTCCCAACCACTTCCACACACCCCATTCTCTCGATAATTGACCACCCAAAACTCGCCTCTTCATTCATCCATACAACATGTACACAGAAATACACAATTTGATTCTTTTTCTCTCTCCGTTTTTTGTGTACATTTTGTCAGGAAAACTACTGGGGGTGTCTATAAAGAGAAGATACTTCCCTACTTTTTCTTCATTCCAATATTTTCACAAAATTAAGACCACAATCGTATTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGAACGAAAAAGAGATCGTGGGATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATTATAATGTTTTCCCCCTTTCACCACGATGATTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAATTTAGGAATAAACAAGGAGTCTTCTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAGAAAATAAGTTGCTTGAAA</pcr_primer_p1>
		<pcr_primer_p2>GGAATAGATCAAGGACAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGAGAAAATAAGTTGCTTGAAACTCTGTTCATAATAGCCCCTCGAGGAGTCAAACTTTTGGGCCCACCGTTTGCGGTGCCGCGTTGCTACCATCTGAGCTACGGTAGGAGAAGTAGCGCCACCGCCTGAACACGGACAGAGAGCCTCAAAATATGACTCGGCTTATAGAGCAAAGTTTAACCTCCAAATCGTGACAACAACAATCTACCGTATCCTTGATGACGTGGATCCTGTCCTTGATCTATTCC</canonical_amplicon>
		<polymorphic_amplicon>ATGAGAAAATAAGTTGCTTGAAACTCTGTTCATAATAGCCCCTCGAGGAGTCAAACTTTTGGGCCCACCGTTTGCGGTGCCGCGTTGCTACCATCTGAGCTACGGTAGGAGAAGTAGCGCCACCGCCTGAACACGGACAGAGAGCCTCAAAATATGACTCGGCTTATAGAGCAAAGTTTAACCTYCAAATCGTGACAACAACAATCTACCGTATCCTTGATGACGTGGATCCTGTCCTTGATCTATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28102</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>703894</contig_pos>
        <strand>+</strand>
        <context>TTAACCTYCA[A/G]ATCGTGACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGAGAGCCTCAAAATATGACTCGGCTTATAGAGCAAAGTTTAACCTCCA</left_flank>
        <right_flank>ATCGTGACAACAACAATCTACCGTATCCTTGATGACGTGGATCCTGTCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTACTTTGTGAGTCTGAAAAATGTACTAGATTTAGCCTGATGTGTTTGAAAGTTTTCAGATTTATGAAACGAAAATAGGGTTTCAATTTTGTAGTTGACAAGTTTTTTGTGCGAATTCGCCTGAAGCTGGTAACTAACGAAATGGGAAACATTTCAGAATTTTGGACGAATTCAGCGTTGCGACACTTTCCAGTTATTCATCTCATTTGGATGGATTTCTACGAAAAATTGTCTACTGAAACATTGAAGCCCTATTTTTTTTCTATTAACAATCTACAAAGATCTGTTTCAGAAAAGTTAAGAGAGGGTAACATGAGAAAATAAGTTGCTTGAAACTCTGTTCATAATAGCCCCTCGAGGAGTCAAACTTTTGGGCCCACCGTTTGCGGTGCCGCGTTGCTACCATCTGAGCTACGGTAGGAGAAGTAGCGCCACCGCCTGAACACGGACAGAGAGCCTCAAAATATGACTCGGCTTATAGAGCAAAGTTTAACCTCCAAATCGTGACAACAACAATCTACCGTATCCTTGATGACGTGGATCCTGTCCTTGATCTATTCCCAACCACTTCCACACACCCCATTCTCTCGATAATTGACCACCCAAAACTCGCCTCTTCATTCATCCATACAACATGTACACAGAAATACACAATTTGATTCTTTTTCTCTCTCCGTTTTTTGTGTACATTTTGTCAGGAAAACTACTGGGGGTGTCTATAAAGAGAAGATACTTCCCTACTTTTTCTTCATTCCAATATTTTCACAAAATTAAGACCACAATCGTATTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGAACGAAAAAGAGATCGTGGGATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATTATAATGTTTTCCCCCTTTCACCACGATGATTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAATTTAGGAATAAACAAGGAGTCTTCTAGAGA</canonical>
            <polymorphic>TTACTTTGTGAGTCTGAAAAATGTACTAGATTTAGCCTGATGTGTTTGAAAGTTTTCAGATTTATGAAACGAAAATAGGGTTTCAATTTTGTAGTTGACAAGTTTTTTGTGCGAATTCGCCTGAAGCTGGTAACTAACGAAATGGGAAACATTTCAGAATTTTGGACGAATTCAGCGTTGCGACACTTTCCAGTTATTCATCTCATTTGGATGGATTTCTACGAAAAATTGTCTACTGAAACATTGAAGCCCTATTTTTTTTCTATTAACAATCTACAAAGATCTGTTTCAGAAAAGTTAAGAGAGGGTAACATGAGAAAATAAGTTGCTTGAAACTCTGTTCATAATAGCCCCTCGAGGAGTCAAACTTTTGGGCCCACCGTTTGCGGTGCCGCGTTGCTACCATCTGAGCTACGGTAGGAGAAGTAGCGCCACCGCCTGAACACGGACAGAGAGCCTCAAAATATGACTCGGCTTATAGAGCAAAGTTTAACCTCCARATCGTGACAACAACAATCTACCGTATCCTTGATGACGTGGATCCTGTCCTTGATCTATTCCCAACCACTTCCACACACCCCATTCTCTCGATAATTGACCACCCAAAACTCGCCTCTTCATTCATCCATACAACATGTACACAGAAATACACAATTTGATTCTTTTTCTCTCTCCGTTTTTTGTGTACATTTTGTCAGGAAAACTACTGGGGGTGTCTATAAAGAGAAGATACTTCCCTACTTTTTCTTCATTCCAATATTTTCACAAAATTAAGACCACAATCGTATTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGAACGAAAAAGAGATCGTGGGATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATTATAATGTTTTCCCCCTTTCACCACGATGATTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAATTTAGGAATAAACAAGGAGTCTTCTAGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAGAAAATAAGTTGCTTGAAA</pcr_primer_p1>
		<pcr_primer_p2>GGAATAGATCAAGGACAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGAGAAAATAAGTTGCTTGAAACTCTGTTCATAATAGCCCCTCGAGGAGTCAAACTTTTGGGCCCACCGTTTGCGGTGCCGCGTTGCTACCATCTGAGCTACGGTAGGAGAAGTAGCGCCACCGCCTGAACACGGACAGAGAGCCTCAAAATATGACTCGGCTTATAGAGCAAAGTTTAACCTCCAAATCGTGACAACAACAATCTACCGTATCCTTGATGACGTGGATCCTGTCCTTGATCTATTCC</canonical_amplicon>
		<polymorphic_amplicon>ATGAGAAAATAAGTTGCTTGAAACTCTGTTCATAATAGCCCCTCGAGGAGTCAAACTTTTGGGCCCACCGTTTGCGGTGCCGCGTTGCTACCATCTGAGCTACGGTAGGAGAAGTAGCGCCACCGCCTGAACACGGACAGAGAGCCTCAAAATATGACTCGGCTTATAGAGCAAAGTTTAACCTCCARATCGTGACAACAACAATCTACCGTATCCTTGATGACGTGGATCCTGTCCTTGATCTATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28103</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>704366</contig_pos>
        <strand>+</strand>
        <context>TGAATTCAAK[G/T]TAGGAATAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAAT</left_flank>
        <right_flank>TAGGAATAAACAAGGAGTCTTCTAGAGAGAATTCTAGAAAGTTGATGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCTTATAGAGCAAAGTTTAACCTCCAAATCGTGACAACAACAATCTACCGTATCCTTGATGACGTGGATCCTGTCCTTGATCTATTCCCAACCACTTCCACACACCCCATTCTCTCGATAATTGACCACCCAAAACTCGCCTCTTCATTCATCCATACAACATGTACACAGAAATACACAATTTGATTCTTTTTCTCTCTCCGTTTTTTGTGTACATTTTGTCAGGAAAACTACTGGGGGTGTCTATAAAGAGAAGATACTTCCCTACTTTTTCTTCATTCCAATATTTTCACAAAATTAAGACCACAATCGTATTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGAACGAAAAAGAGATCGTGGGATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATTATAATGTTTTCCCCCTTTCACCACGATGATTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAATTTAGGAATAAACAAGGAGTCTTCTAGAGAGAATTCTAGAAAGTTGATGAAGTAGAAAAAGGGGATACCGTAGTTATGGCTAGAACTGACTAGAAGATACAAAGTGAAGTGGTCTAAGAAGTACTAGAAACTGTCTAGAACCTCATCTTTTGAACAGAAGCATTTTTTGGAAGTGTGGACTAGAATCTAGCCAATCGTTATTGCCATAACATTGATTCGGGCTGCCTTTGACTTTCAATTTGCGAAATCTGGGTAAATTTAAAAAGAAGATAGATTTTCACAAGCTATGAAAAATTAACAACAACCAATAATGAAATTGGCATTAGAAAATTTGAGCAGAGACCATTTCGGAATATAAATTGGGATAACGCAGAACCTGTAATAGAATGGCTTCCACACTGTCAGCTTTGAGTTCAATTATCTCAATTCCTATGCAAGCTATCAAAATGTGTTAATTTACAAATAACTTCCGATACATATTGTGATAAACAGATTAGCAGCT</canonical>
            <polymorphic>GGCTTATAGAGCAAAGTTTAACCTCCAAATCGTGACAACAACAATCTACCGTATCCTTGATGACGTGGATCCTGTCCTTGATCTATTCCCAACCACTTCCACACACCCCATTCTCTCGATAATTGACCACCCAAAACTCGCCTCTTCATTCATCCATACAACATGTACACAGAAATACACAATTTGATTCTTTTTCTCTCTCCGTTTTTTGTGTACATTTTGTCAGGAAAACTACTGGGGGTGTCTATAAAGAGAAGATACTTCCCTACTTTTTCTTCATTCCAATATTTTCACAAAATTAAGACCACAATCGTATTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGAACGAAAAAGAGATCGTGGGATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATTATAATGTTTTCCCCCTTTCACCACGATGATTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAATKTAGGAATAAACAAGGAGTCTTCTAGAGAGAATTCTAGAAAGTTGATGAAGTAGAAAAAGGGGATACCGTAGTTATGGCTAGAACTGACTAGAAGATACAAAGTGAAGTGGTCTAAGAAGTACTAGAAACTGTCTAGAACCTCATCTTTTGAACAGAAGCATTTTTTGGAAGTGTGGACTAGAATCTAGCCAATCGTTATTGCCATAACATTGATTCGGGCTGCCTTTGACTTTCAATTTGCGAAATCTGGGTAAATTTAAAAAGAAGATAGATTTTCACAAGCTATGAAAAATTAACAACAACCAATAATGAAATTGGCATTAGAAAATTTGAGCAGAGACCATTTCGGAATATAAATTGGGATAACGCAGAACCTGTAATAGAATGGCTTCCACACTGTCAGCTTTGAGTTCAATTATCTCAATTCCTATGCAAGCTATCAAAATGTGTTAATTTACAAATAACTTCCGATACATATTGTGATAAACAGATTAGCAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>205 120 119 116 76 60 58 49 37 33 29 29 22 19 14 9 5</canonical_bands>
                <polymorphic_bands>205 120 119 116 76 60 58 49 38 37 29 29 22 19 14 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATTTATACGTGAGAGGAGGAG</pcr_primer_p1>
		<pcr_primer_p2>GTATCCCCTTTTTCTACTTCATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGAACGAAAAAGAGATCGTGGGATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATTATAATGTTTTCCCCCTTTCACCACGATGATTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAATTTAGGAATAAACAAGGAGTCTTCTAGAGAGAATTCTAGAAAGTTGATGAAGTAGAAAAAGGGGATAC</canonical_amplicon>
		<polymorphic_amplicon>TTATTTATACGTGAGAGGAGGAGGTTGTGCGAAAAACCGAACGAAAAAGAGATCGTGGGATTGAATGGCAACACCCGCGCGAAAAGGAAGAAGACACATCAATTATAATGTTTTCCCCCTTTCACCACGATGATTTCTTCTGAAAAAAGACACTCGTAAACATTGGGAAGGGATTGAATTCAATKTAGGAATAAACAAGGAGTCTTCTAGAGAGAATTCTAGAAAGTTGATGAAGTAGAAAAAGGGGATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28104</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>731112</contig_pos>
        <strand>+</strand>
        <context>TTATTTCAAT[A/C]TTCGAATATC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGAAAATATTTCTGTGTTCATTCCTTTGAAGTTAACCTTTTTATTTCAAT</left_flank>
        <right_flank>TTCGAATATCTGAAATTCCGATTTTTTTGGAATTATTGAAATATTTAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATACGAGTCACGTTACGAATCCGAGGAATTGAAGTGCTGGTTCGAGATATTATTTGACGGTATTATCAGGGAAAGGACTTGGTACAAAAGAATTCCCGGAACCGAGGACAATTTTCTAGTTATGATACCCCATTATGCAAGTGAATTCATTATGCAAGTGAATTTTTCTCGCATAAAACTTAAAAGAAGGATCAATGTTGTTGTTTGATTAGAAGATGTTTTATGTGGTGGATGTGTATTATTCAACTAGTTTCTCGATATACATTTTGAATCCTGTTTTTGAGTTACTAATGATGAAGCTGAAAGGATGGGGGAACCCATAGTTGGAAGTGCCGCATTGTTACGAGCCGACTGAAGTCTTGCATGAAAGCGGAACGATAGCGACGCGCTGTGTGAAAAACGATGACTGTTCAGCGTTCAGAATGCACACTCTCGTCTCACAAAAAACCCGAAAATATTTCTGTGTTCATTCCTTTGAAGTTAACCTTTTTATTTCAATTTTCGAATATCTGAAATTCCGATTTTTTTGGAATTATTGAAATATTTAAATAACCACTTTCACTTTCACACATTGATTTTTTTGTTTACCCGAATGCATACAACTGATAAGCGAACTATCAAACACAAAAATTGCCTCATCATAATTGTTCTCGATTTCCAACGTTTTTCCTTTTCCATGTAGAGCACAGCCACATTTCTTTTCCCTCATTGAAATACTGTTTCGCACGATTATTCTATCAACTCTCTCCCTGTTTCCAGTCAAAAATGTCATCTGAAAAATCTCTGAATGAAATGCCTGGTGTTGTATTGTCTGCTGTTATGGATCACTTGGATTTCCGATCAATGTAAGTTACTTATATTTTCCTATGCTCAAAATACGACTCAATCTTTAAGATTGAGAATGCGAAAAGTTTGCCATGATTTACGAAATTTTATTGATGAAGTCGTTCCATCATCTTATATGACGAGAATCATTGTCACAGTGCGGCCATATGACGTT</canonical>
            <polymorphic>ATACGAGTCACGTTACGAATCCGAGGAATTGAAGTGCTGGTTCGAGATATTATTTGACGGTATTATCAGGGAAAGGACTTGGTACAAAAGAATTCCCGGAACCGAGGACAATTTTCTAGTTATGATACCCCATTATGCAAGTGAATTCATTATGCAAGTGAATTTTTCTCGCATAAAACTTAAAAGAAGGATCAATGTTGTTGTTTGATTAGAAGATGTTTTATGTGGTGGATGTGTATTATTCAACTAGTTTCTCGATATACATTTTGAATCCTGTTTTTGAGTTACTAATGATGAAGCTGAAAGGATGGGGGAACCCATAGTTGGAAGTGCCGCATTGTTACGAGCCGACTGAAGTCTTGCATGAAAGCGGAACGATAGCGACGCGCTGTGTGAAAAACGATGACTGTTCAGCGTTCAGAATGCACACTCTCGTCTCACAAAAAACCCGAAAATATTTCTGTGTTCATTCCTTTGAAGTTAACCTTTTTATTTCAATMTTCGAATATCTGAAATTCCGATTTTTTTGGAATTATTGAAATATTTAAATAACCACTTTCACTTTCACACATTGATTTTTTTGTTTACCCGAATGCATACAACTGATAAGCGAACTATCAAACACAAAAATTGCCTCATCATAATTGTTCTCGATTTCCAACGTTTTTCCTTTTCCATGTAGAGCACAGCCACATTTCTTTTCCCTCATTGAAATACTGTTTCGCACGATTATTCTATCAACTCTCTCCCTGTTTCCAGTCAAAAATGTCATCTGAAAAATCTCTGAATGAAATGCCTGGTGTTGTATTGTCTGCTGTTATGGATCACTTGGATTTCCGATCAATGTAAGTTACTTATATTTTCCTATGCTCAAAATACGACTCAATCTTTAAGATTGAGAATGCGAAAAGTTTGCCATGATTTACGAAATTTTATTGATGAAGTCGTTCCATCATCTTATATGACGAGAATCATTGTCACAGTGCGGCCATATGACGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>336 286 98 72 64 34 26 19 17 17 17 14</canonical_bands>
                <polymorphic_bands>353 286 98 72 64 34 26 19 17 17 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTGTTCAGCGTTCAGAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATCGAGAACAATTATGATGAG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GACTGTTCAGCGTTCAGAATGCACACTCTCGTCTCACAAAAAACCCGAAAATATTTCTGTGTTCATTCCTTTGAAGTTAACCTTTTTATTTCAATTTTCGAATATCTGAAATTCCGATTTTTTTGGAATTATTGAAATATTTAAATAACCACTTTCACTTTCACACATTGATTTTTTTGTTTACCCGAATGCATACAACTGATAAGCGAACTATCAAACACAAAAATTGCCTCATCATAATTGTTCTCGATTT</canonical_amplicon>
		<polymorphic_amplicon>GACTGTTCAGCGTTCAGAATGCACACTCTCGTCTCACAAAAAACCCGAAAATATTTCTGTGTTCATTCCTTTGAAGTTAACCTTTTTATTTCAATMTTCGAATATCTGAAATTCCGATTTTTTTGGAATTATTGAAATATTTAAATAACCACTTTCACTTTCACACATTGATTTTTTTGTTTACCCGAATGCATACAACTGATAAGCGAACTATCAAACACAAAAATTGCCTCATCATAATTGTTCTCGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28105</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>731308</contig_pos>
        <strand>+</strand>
        <context>ACAGCCACAT[A/T]TCTTTTCCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTTCTCGATTTCCAACGTTTTTCCTTTTCCATGTAGAGCACAGCCACAT</left_flank>
        <right_flank>TCTTTTCCCTCATTGAAATACTGTTTCGCACGATTATTCTATCAACTCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGTTGTTTGATTAGAAGATGTTTTATGTGGTGGATGTGTATTATTCAACTAGTTTCTCGATATACATTTTGAATCCTGTTTTTGAGTTACTAATGATGAAGCTGAAAGGATGGGGGAACCCATAGTTGGAAGTGCCGCATTGTTACGAGCCGACTGAAGTCTTGCATGAAAGCGGAACGATAGCGACGCGCTGTGTGAAAAACGATGACTGTTCAGCGTTCAGAATGCACACTCTCGTCTCACAAAAAACCCGAAAATATTTCTGTGTTCATTCCTTTGAAGTTAACCTTTTTATTTCAATTTTCGAATATCTGAAATTCCGATTTTTTTGGAATTATTGAAATATTTAAATAACCACTTTCACTTTCACACATTGATTTTTTTGTTTACCCGAATGCATACAACTGATAAGCGAACTATCAAACACAAAAATTGCCTCATCATAATTGTTCTCGATTTCCAACGTTTTTCCTTTTCCATGTAGAGCACAGCCACATTTCTTTTCCCTCATTGAAATACTGTTTCGCACGATTATTCTATCAACTCTCTCCCTGTTTCCAGTCAAAAATGTCATCTGAAAAATCTCTGAATGAAATGCCTGGTGTTGTATTGTCTGCTGTTATGGATCACTTGGATTTCCGATCAATGTAAGTTACTTATATTTTCCTATGCTCAAAATACGACTCAATCTTTAAGATTGAGAATGCGAAAAGTTTGCCATGATTTACGAAATTTTATTGATGAAGTCGTTCCATCATCTTATATGACGAGAATCATTGTCACAGTGCGGCCATATGACGTTGAGTTAATTCTGGAAGATTCGAAAACTGGAGCTAGGTATACTACTATATATGCTCATCGAAATGTTTGGAATGATCTGGATATTATTTTGAAACATCAAAAGGAAGTGACAAAAATATTCATTTGGGTTTGGATAGCATGAGAGATGATATGATGATCGACAATGAGGTCTGGGAAGAGGCGCATTCAGAGTTTTT</canonical>
            <polymorphic>GTTGTTGTTTGATTAGAAGATGTTTTATGTGGTGGATGTGTATTATTCAACTAGTTTCTCGATATACATTTTGAATCCTGTTTTTGAGTTACTAATGATGAAGCTGAAAGGATGGGGGAACCCATAGTTGGAAGTGCCGCATTGTTACGAGCCGACTGAAGTCTTGCATGAAAGCGGAACGATAGCGACGCGCTGTGTGAAAAACGATGACTGTTCAGCGTTCAGAATGCACACTCTCGTCTCACAAAAAACCCGAAAATATTTCTGTGTTCATTCCTTTGAAGTTAACCTTTTTATTTCAATTTTCGAATATCTGAAATTCCGATTTTTTTGGAATTATTGAAATATTTAAATAACCACTTTCACTTTCACACATTGATTTTTTTGTTTACCCGAATGCATACAACTGATAAGCGAACTATCAAACACAAAAATTGCCTCATCATAATTGTTCTCGATTTCCAACGTTTTTCCTTTTCCATGTAGAGCACAGCCACATWTCTTTTCCCTCATTGAAATACTGTTTCGCACGATTATTCTATCAACTCTCTCCCTGTTTCCAGTCAAAAATGTCATCTGAAAAATCTCTGAATGAAATGCCTGGTGTTGTATTGTCTGCTGTTATGGATCACTTGGATTTCCGATCAATGTAAGTTACTTATATTTTCCTATGCTCAAAATACGACTCAATCTTTAAGATTGAGAATGCGAAAAGTTTGCCATGATTTACGAAATTTTATTGATGAAGTCGTTCCATCATCTTATATGACGAGAATCATTGTCACAGTGCGGCCATATGACGTTGAGTTAATTCTGGAAGATTCGAAAACTGGAGCTAGGTATACTACTATATATGCTCATCGAAATGTTTGGAATGATCTGGATATTATTTTGAAACATCAAAAGGAAGTGACAAAAATATTCATTTGGGTTTGGATAGCATGAGAGATGATATGATGATCGACAATGAGGTCTGGGAAGAGGCGCATTCAGAGTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATAACCACTTTCACTTTCACA</pcr_primer_p1>
		<pcr_primer_p2>CATTTCATTCAGAGATTTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATAACCACTTTCACTTTCACACATTGATTTTTTTGTTTACCCGAATGCATACAACTGATAAGCGAACTATCAAACACAAAAATTGCCTCATCATAATTGTTCTCGATTTCCAACGTTTTTCCTTTTCCATGTAGAGCACAGCCACATTTCTTTTCCCTCATTGAAATACTGTTTCGCACGATTATTCTATCAACTCTCTCCCTGTTTCCAGTCAAAAATGTCATCTGAAAAATCTCTGAATGAAATG</canonical_amplicon>
		<polymorphic_amplicon>AAATAACCACTTTCACTTTCACACATTGATTTTTTTGTTTACCCGAATGCATACAACTGATAAGCGAACTATCAAACACAAAAATTGCCTCATCATAATTGTTCTCGATTTCCAACGTTTTTCCTTTTCCATGTAGAGCACAGCCACATWTCTTTTCCCTCATTGAAATACTGTTTCGCACGATTATTCTATCAACTCTCTCCCTGTTTCCAGTCAAAAATGTCATCTGAAAAATCTCTGAATGAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28106</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>741635</contig_pos>
        <strand></strand>
        <context>CGAATTTAGA[G/A]ATTTGCTCCa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTTGCTTGATATGACCTTCTGAATGAAAAACGTGAGACCTCGAATTTAGA</left_flank>
        <right_flank>ATTTGCTCCAATAGAAGCCCACCCTATACGTGCATTTTGAGCTCATTTAT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATATCGAATGGTGTTGCGCATTTATACAACTTTTGATGAATCTGAAAAAATTAAAATTACCGTATTTCCTTTGAAGTACGCCCAACCCGTTTAATTTGAGCCCAATTATCTCGATTTCGGTAAAAGATATCAAAAATGTGTCAACTAATGAATTGCTTATCACAATATCACGTATATTTTATCAGTTGAAAAAGTGTTGATATTTTTCACAGGAATCTAGATAATTGAGCTTAAAATTGACGGTTTGGGTGCTTTTCTATTAGAGGAAATGCGGTATAAATTTTTAGAAAGTTCTGGAAGTTCTTACTCTAATGACTCCAGCATCGCCTTCGTTTATATTGAAATTTGAATATTTCTGATGGAAAATCTGTTGGGATGTCTGCAGCTGGAGATAGATGTCGAAATTTGTGAAGTCTTGGCTTTTCGGGTTTGCCAATTTAGGTTTCACTTGCTTGATATGACCTTCTGAATGAAAAACGTGAGACCTCGAATTTAGAGATTTGCTCCAATAGAAGCCCACCCTATACGTGCATTTTGAGCTCATTTATCTCGGTTCCTATAAAAAGTAGCAGGAATCTGTCAACTGATACAATTTTGGAGATATAACGATAAATAATTTATTAGTTAATAGATTTTCGATACATTTTATTAGAACCGCGATAATTGAGCTTAAACTGAACGTATAGGGGCTTCTATCAAAGTACGGTATCAAACCTTCAAAAATCATTCCGATACTTATGCATTTTTCGAATCTACAACTTCTGCAGAAAATTGTGGGATCTAAAGGAATCAGTTTTTTTTCCTTTTTTTTCAAACATTTCAAAAGTTGAAATACCTGAAAAAGTGTGGCTGTCTTGCTTATCGCATTTCTTCATTTTCCTCTTCTGAACACTTCGTTGGAAGAACATTTTACATTTAAAACATACACCGGGAAAGAATAATTTTTCATTTAGTTTCAAGTCGCAGACTTTGCAAGAGGGCAGCATCAGAATTTTCGG</canonical>
            <polymorphic>TGATATCGAATGGTGTTGCGCATTTATACAACTTTTGATGAATCTGAAAAAATTAAAATTACCGTATTTCCTTTGAAGTACGCCCAACCCGTTTAATTTGAGCCCAATTATCTCGATTTCGGTAAAAGATATCAAAAATGTGTCAACTAATGAATTGCTTATCACAATATCACGTATATTTTATCAGTTGAAAAAGTGTTGATATTTTTCACAGGAATCTAGATAATTGAGCTTAAAATTGACGGTTTGGGTGCTTTTCTATTAGAGGAAATGCGGTATAAATTTTTAGAAAGTTCTGGAAGTTCTTACTCTAATGACTCCAGCATCGCCTTCGTTTATATTGAAATTTGAATATTTCTGATGGAAAATCTGTTGGGATGTCTGCAGCTGGAGATAGATGTCGAAATTTGTGAAGTCTTGGCTTTTCGGGTTTGCCAATTTAGGTTTCACTTGCTTGATATGACCTTCTGAATGAAAAACGTGAGACCTCGAATTTAGARATTTGCTCCAATAGAAGCCCACCCTATACGTGCATTTTGAGCTCATTTATCTCGGTTCCTATAAAAAGTAGCAGGAATCTGTCAACTGATACAATTTTGGAGATATAACGATAAATAATTTATTAGTTAATAGATTTTCGATACATTTTATTAGAACCGCGATAATTGAGCTTAAACTGAACGTATAGGGGCTTCTATCAAAGTACGGTATCAAACCTTCAAAAATCATTCCGATACTTATGCATTTTTCGAATCTACAACTTCTGCAGAAAATTGTGGGATCTAAAGGAATCAGTTTTTTTTCCTTTTTTTTCAAACATTTCAAAAGTTGAAATACCTGAAAAAGTGTGGCTGTCTTGCTTATCGCATTTCTTCATTTTCCTCTTCTGAACACTTCGTTGGAAGAACATTTTACATTTAAAACATACACCGGGAAAGAATAATTTTTCATTTAGTTTCAAGTCGCAGACTTTGCAAGAGGGCAGCATCAGAATTTTCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGCTTGATATGACCTTCTG</pcr_primer_p1>
		<pcr_primer_p2>TAAGTATCGGAATGATTTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>CTTGCTTGATATGACCTTCTGAATGAAAAACGTGAGACCTCGAATTTAGAGATTTGCTCCAATAGAAGCCCACCCTATACGTGCATTTTGAGCTCATTTATCTCGGTTCCTATAAAAAGTAGCAGGAATCTGTCAACTGATACAATTTTGGAGATATAACGATAAATAATTTATTAGTTAATAGATTTTCGATACATTTTATTAGAACCGCGATAATTGAGCTTAAACTGAACGTATAGGGGCTTCTATCAAAGTACGGTATCAAACCTTCAAAAATCATTCCGATACTTA</canonical_amplicon>
		<polymorphic_amplicon>CTTGCTTGATATGACCTTCTGAATGAAAAACGTGAGACCTCGAATTTAGARATTTGCTCCAATAGAAGCCCACCCTATACGTGCATTTTGAGCTCATTTATCTCGGTTCCTATAAAAAGTAGCAGGAATCTGTCAACTGATACAATTTTGGAGATATAACGATAAATAATTTATTAGTTAATAGATTTTCGATACATTTTATTAGAACCGCGATAATTGAGCTTAAACTGAACGTATAGGGGCTTCTATCAAAGTACGGTATCAAACCTTCAAAAATCATTCCGATACTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28107</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>741710</contig_pos>
        <strand></strand>
        <context>aaagtagcag[G/A]aatctgtcaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TATACGTGCATTTTGAGCTCATTTATCTCGGTTCCTATAAAAAGTAGCAG</left_flank>
        <right_flank>AATCTGTCAACTGATACAATTTTGGAGATATAACGATAAATAATTTATTA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTACGCCCAACCCGTTTAATTTGAGCCCAATTATCTCGATTTCGGTAAAAGATATCAAAAATGTGTCAACTAATGAATTGCTTATCACAATATCACGTATATTTTATCAGTTGAAAAAGTGTTGATATTTTTCACAGGAATCTAGATAATTGAGCTTAAAATTGACGGTTTGGGTGCTTTTCTATTAGAGGAAATGCGGTATAAATTTTTAGAAAGTTCTGGAAGTTCTTACTCTAATGACTCCAGCATCGCCTTCGTTTATATTGAAATTTGAATATTTCTGATGGAAAATCTGTTGGGATGTCTGCAGCTGGAGATAGATGTCGAAATTTGTGAAGTCTTGGCTTTTCGGGTTTGCCAATTTAGGTTTCACTTGCTTGATATGACCTTCTGAATGAAAAACGTGAGACCTCGAATTTAGAGATTTGCTCCAATAGAAGCCCACCCTATACGTGCATTTTGAGCTCATTTATCTCGGTTCCTATAAAAAGTAGCAGGAATCTGTCAACTGATACAATTTTGGAGATATAACGATAAATAATTTATTAGTTAATAGATTTTCGATACATTTTATTAGAACCGCGATAATTGAGCTTAAACTGAACGTATAGGGGCTTCTATCAAAGTACGGTATCAAACCTTCAAAAATCATTCCGATACTTATGCATTTTTCGAATCTACAACTTCTGCAGAAAATTGTGGGATCTAAAGGAATCAGTTTTTTTTCCTTTTTTTTCAAACATTTCAAAAGTTGAAATACCTGAAAAAGTGTGGCTGTCTTGCTTATCGCATTTCTTCATTTTCCTCTTCTGAACACTTCGTTGGAAGAACATTTTACATTTAAAACATACACCGGGAAAGAATAATTTTTCATTTAGTTTCAAGTCGCAGACTTTGCAAGAGGGCAGCATCAGAATTTTCGGAAAATACTTAGATTCTACCCATATTTATGGCAGGGTTTTAGTTGATCAGAAAGTGATTACAAAGCTGATAGATAA</canonical>
            <polymorphic>AAGTACGCCCAACCCGTTTAATTTGAGCCCAATTATCTCGATTTCGGTAAAAGATATCAAAAATGTGTCAACTAATGAATTGCTTATCACAATATCACGTATATTTTATCAGTTGAAAAAGTGTTGATATTTTTCACAGGAATCTAGATAATTGAGCTTAAAATTGACGGTTTGGGTGCTTTTCTATTAGAGGAAATGCGGTATAAATTTTTAGAAAGTTCTGGAAGTTCTTACTCTAATGACTCCAGCATCGCCTTCGTTTATATTGAAATTTGAATATTTCTGATGGAAAATCTGTTGGGATGTCTGCAGCTGGAGATAGATGTCGAAATTTGTGAAGTCTTGGCTTTTCGGGTTTGCCAATTTAGGTTTCACTTGCTTGATATGACCTTCTGAATGAAAAACGTGAGACCTCGAATTTAGAGATTTGCTCCAATAGAAGCCCACCCTATACGTGCATTTTGAGCTCATTTATCTCGGTTCCTATAAAAAGTAGCAGRAATCTGTCAACTGATACAATTTTGGAGATATAACGATAAATAATTTATTAGTTAATAGATTTTCGATACATTTTATTAGAACCGCGATAATTGAGCTTAAACTGAACGTATAGGGGCTTCTATCAAAGTACGGTATCAAACCTTCAAAAATCATTCCGATACTTATGCATTTTTCGAATCTACAACTTCTGCAGAAAATTGTGGGATCTAAAGGAATCAGTTTTTTTTCCTTTTTTTTCAAACATTTCAAAAGTTGAAATACCTGAAAAAGTGTGGCTGTCTTGCTTATCGCATTTCTTCATTTTCCTCTTCTGAACACTTCGTTGGAAGAACATTTTACATTTAAAACATACACCGGGAAAGAATAATTTTTCATTTAGTTTCAAGTCGCAGACTTTGCAAGAGGGCAGCATCAGAATTTTCGGAAAATACTTAGATTCTACCCATATTTATGGCAGGGTTTTAGTTGATCAGAAAGTGATTACAAAGCTGATAGATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>259 222 176 140 101 64 38</canonical_bands>
                <polymorphic_bands>435 222 140 101 64 38</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>360 222 176 140 64 38</canonical_bands>
                <polymorphic_bands>536 222 140 64 38</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACGTGAGACCTCGAATTTAG</pcr_primer_p1>
		<pcr_primer_p2>TAAGTATCGGAATGATTTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>AACGTGAGACCTCGAATTTAGAGATTTGCTCCAATAGAAGCCCACCCTATACGTGCATTTTGAGCTCATTTATCTCGGTTCCTATAAAAAGTAGCAGGAATCTGTCAACTGATACAATTTTGGAGATATAACGATAAATAATTTATTAGTTAATAGATTTTCGATACATTTTATTAGAACCGCGATAATTGAGCTTAAACTGAACGTATAGGGGCTTCTATCAAAGTACGGTATCAAACCTTCAAAAATCATTCCGATACTTA</canonical_amplicon>
		<polymorphic_amplicon>AACGTGAGACCTCGAATTTAGAGATTTGCTCCAATAGAAGCCCACCCTATACGTGCATTTTGAGCTCATTTATCTCGGTTCCTATAAAAAGTAGCAGRAATCTGTCAACTGATACAATTTTGGAGATATAACGATAAATAATTTATTAGTTAATAGATTTTCGATACATTTTATTAGAACCGCGATAATTGAGCTTAAACTGAACGTATAGGGGCTTCTATCAAAGTACGGTATCAAACCTTCAAAAATCATTCCGATACTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28108</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>741819</contig_pos>
        <strand></strand>
        <context>aaactgaacg[T/C]ataggggctt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTTTCGATACATTTTATTAGAACCGCGATAATTGAGCTTAAACTGAACG</left_flank>
        <right_flank>ATAGGGGCTTCTATCAAAGTACGGTATCAAACCTTCAAAAATCATTCCGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTTGAAAAAGTGTTGATATTTTTCACAGGAATCTAGATAATTGAGCTTAAAATTGACGGTTTGGGTGCTTTTCTATTAGAGGAAATGCGGTATAAATTTTTAGAAAGTTCTGGAAGTTCTTACTCTAATGACTCCAGCATCGCCTTCGTTTATATTGAAATTTGAATATTTCTGATGGAAAATCTGTTGGGATGTCTGCAGCTGGAGATAGATGTCGAAATTTGTGAAGTCTTGGCTTTTCGGGTTTGCCAATTTAGGTTTCACTTGCTTGATATGACCTTCTGAATGAAAAACGTGAGACCTCGAATTTAGAGATTTGCTCCAATAGAAGCCCACCCTATACGTGCATTTTGAGCTCATTTATCTCGGTTCCTATAAAAAGTAGCAGGAATCTGTCAACTGATACAATTTTGGAGATATAACGATAAATAATTTATTAGTTAATAGATTTTCGATACATTTTATTAGAACCGCGATAATTGAGCTTAAACTGAACGTATAGGGGCTTCTATCAAAGTACGGTATCAAACCTTCAAAAATCATTCCGATACTTATGCATTTTTCGAATCTACAACTTCTGCAGAAAATTGTGGGATCTAAAGGAATCAGTTTTTTTTCCTTTTTTTTCAAACATTTCAAAAGTTGAAATACCTGAAAAAGTGTGGCTGTCTTGCTTATCGCATTTCTTCATTTTCCTCTTCTGAACACTTCGTTGGAAGAACATTTTACATTTAAAACATACACCGGGAAAGAATAATTTTTCATTTAGTTTCAAGTCGCAGACTTTGCAAGAGGGCAGCATCAGAATTTTCGGAAAATACTTAGATTCTACCCATATTTATGGCAGGGTTTTAGTTGATCAGAAAGTGATTACAAAGCTGATAGATAATCTTCCGCCCACAAGATTCTTCAATCGGGAAAGTGTTGAGTTGCTCTCATCTTCTGAAAGCTAGAATACATCTCGTGTATTTGAACAAATCTCATAAGAGGAAATATTT</canonical>
            <polymorphic>CAGTTGAAAAAGTGTTGATATTTTTCACAGGAATCTAGATAATTGAGCTTAAAATTGACGGTTTGGGTGCTTTTCTATTAGAGGAAATGCGGTATAAATTTTTAGAAAGTTCTGGAAGTTCTTACTCTAATGACTCCAGCATCGCCTTCGTTTATATTGAAATTTGAATATTTCTGATGGAAAATCTGTTGGGATGTCTGCAGCTGGAGATAGATGTCGAAATTTGTGAAGTCTTGGCTTTTCGGGTTTGCCAATTTAGGTTTCACTTGCTTGATATGACCTTCTGAATGAAAAACGTGAGACCTCGAATTTAGAGATTTGCTCCAATAGAAGCCCACCCTATACGTGCATTTTGAGCTCATTTATCTCGGTTCCTATAAAAAGTAGCAGGAATCTGTCAACTGATACAATTTTGGAGATATAACGATAAATAATTTATTAGTTAATAGATTTTCGATACATTTTATTAGAACCGCGATAATTGAGCTTAAACTGAACGYATAGGGGCTTCTATCAAAGTACGGTATCAAACCTTCAAAAATCATTCCGATACTTATGCATTTTTCGAATCTACAACTTCTGCAGAAAATTGTGGGATCTAAAGGAATCAGTTTTTTTTCCTTTTTTTTCAAACATTTCAAAAGTTGAAATACCTGAAAAAGTGTGGCTGTCTTGCTTATCGCATTTCTTCATTTTCCTCTTCTGAACACTTCGTTGGAAGAACATTTTACATTTAAAACATACACCGGGAAAGAATAATTTTTCATTTAGTTTCAAGTCGCAGACTTTGCAAGAGGGCAGCATCAGAATTTTCGGAAAATACTTAGATTCTACCCATATTTATGGCAGGGTTTTAGTTGATCAGAAAGTGATTACAAAGCTGATAGATAATCTTCCGCCCACAAGATTCTTCAATCGGGAAAGTGTTGAGTTGCTCTCATCTTCTGAAAGCTAGAATACATCTCGTGTATTTGAACAAATCTCATAAGAGGAAATATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>503 295 153 49</canonical_bands>
                <polymorphic_bands>656 295 49</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACGTGAGACCTCGAATTTAG</pcr_primer_p1>
		<pcr_primer_p2>TAAGTATCGGAATGATTTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>AACGTGAGACCTCGAATTTAGAGATTTGCTCCAATAGAAGCCCACCCTATACGTGCATTTTGAGCTCATTTATCTCGGTTCCTATAAAAAGTAGCAGGAATCTGTCAACTGATACAATTTTGGAGATATAACGATAAATAATTTATTAGTTAATAGATTTTCGATACATTTTATTAGAACCGCGATAATTGAGCTTAAACTGAACGTATAGGGGCTTCTATCAAAGTACGGTATCAAACCTTCAAAAATCATTCCGATACTTA</canonical_amplicon>
		<polymorphic_amplicon>AACGTGAGACCTCGAATTTAGAGATTTGCTCCAATAGAAGCCCACCCTATACGTGCATTTTGAGCTCATTTATCTCGGTTCCTATAAAAAGTAGCAGGAATCTGTCAACTGATACAATTTTGGAGATATAACGATAAATAATTTATTAGTTAATAGATTTTCGATACATTTTATTAGAACCGCGATAATTGAGCTTAAACTGAACGYATAGGGGCTTCTATCAAAGTACGGTATCAAACCTTCAAAAATCATTCCGATACTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28109</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>741852</contig_pos>
        <strand></strand>
        <context>ggtATCAAAC[C/T]TTCAAAAATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAGCTTAAACTGAACGTATAGGGGCTTCTATCAAAGTACGGTATCAAAC</left_flank>
        <right_flank>TTCAAAAATCATTCCGATACTTATGCATTTTTCGAATCTACAACTTCTGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAGATAATTGAGCTTAAAATTGACGGTTTGGGTGCTTTTCTATTAGAGGAAATGCGGTATAAATTTTTAGAAAGTTCTGGAAGTTCTTACTCTAATGACTCCAGCATCGCCTTCGTTTATATTGAAATTTGAATATTTCTGATGGAAAATCTGTTGGGATGTCTGCAGCTGGAGATAGATGTCGAAATTTGTGAAGTCTTGGCTTTTCGGGTTTGCCAATTTAGGTTTCACTTGCTTGATATGACCTTCTGAATGAAAAACGTGAGACCTCGAATTTAGAGATTTGCTCCAATAGAAGCCCACCCTATACGTGCATTTTGAGCTCATTTATCTCGGTTCCTATAAAAAGTAGCAGGAATCTGTCAACTGATACAATTTTGGAGATATAACGATAAATAATTTATTAGTTAATAGATTTTCGATACATTTTATTAGAACCGCGATAATTGAGCTTAAACTGAACGTATAGGGGCTTCTATCAAAGTACGGTATCAAACCTTCAAAAATCATTCCGATACTTATGCATTTTTCGAATCTACAACTTCTGCAGAAAATTGTGGGATCTAAAGGAATCAGTTTTTTTTCCTTTTTTTTCAAACATTTCAAAAGTTGAAATACCTGAAAAAGTGTGGCTGTCTTGCTTATCGCATTTCTTCATTTTCCTCTTCTGAACACTTCGTTGGAAGAACATTTTACATTTAAAACATACACCGGGAAAGAATAATTTTTCATTTAGTTTCAAGTCGCAGACTTTGCAAGAGGGCAGCATCAGAATTTTCGGAAAATACTTAGATTCTACCCATATTTATGGCAGGGTTTTAGTTGATCAGAAAGTGATTACAAAGCTGATAGATAATCTTCCGCCCACAAGATTCTTCAATCGGGAAAGTGTTGAGTTGCTCTCATCTTCTGAAAGCTAGAATACATCTCGTGTATTTGAACAAATCTCATAAGAGGAAATATTTTTGATGGCGATAAAATCTGATTAAGATGAAAAT</canonical>
            <polymorphic>TCTAGATAATTGAGCTTAAAATTGACGGTTTGGGTGCTTTTCTATTAGAGGAAATGCGGTATAAATTTTTAGAAAGTTCTGGAAGTTCTTACTCTAATGACTCCAGCATCGCCTTCGTTTATATTGAAATTTGAATATTTCTGATGGAAAATCTGTTGGGATGTCTGCAGCTGGAGATAGATGTCGAAATTTGTGAAGTCTTGGCTTTTCGGGTTTGCCAATTTAGGTTTCACTTGCTTGATATGACCTTCTGAATGAAAAACGTGAGACCTCGAATTTAGAGATTTGCTCCAATAGAAGCCCACCCTATACGTGCATTTTGAGCTCATTTATCTCGGTTCCTATAAAAAGTAGCAGGAATCTGTCAACTGATACAATTTTGGAGATATAACGATAAATAATTTATTAGTTAATAGATTTTCGATACATTTTATTAGAACCGCGATAATTGAGCTTAAACTGAACGTATAGGGGCTTCTATCAAAGTACGGTATCAAACYTTCAAAAATCATTCCGATACTTATGCATTTTTCGAATCTACAACTTCTGCAGAAAATTGTGGGATCTAAAGGAATCAGTTTTTTTTCCTTTTTTTTCAAACATTTCAAAAGTTGAAATACCTGAAAAAGTGTGGCTGTCTTGCTTATCGCATTTCTTCATTTTCCTCTTCTGAACACTTCGTTGGAAGAACATTTTACATTTAAAACATACACCGGGAAAGAATAATTTTTCATTTAGTTTCAAGTCGCAGACTTTGCAAGAGGGCAGCATCAGAATTTTCGGAAAATACTTAGATTCTACCCATATTTATGGCAGGGTTTTAGTTGATCAGAAAGTGATTACAAAGCTGATAGATAATCTTCCGCCCACAAGATTCTTCAATCGGGAAAGTGTTGAGTTGCTCTCATCTTCTGAAAGCTAGAATACATCTCGTGTATTTGAACAAATCTCATAAGAGGAAATATTTTTGATGGCGATAAAATCTGATTAAGATGAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACGTGAGACCTCGAATTTAG</pcr_primer_p1>
		<pcr_primer_p2>CCTTTAGATCCCACAATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>AACGTGAGACCTCGAATTTAGAGATTTGCTCCAATAGAAGCCCACCCTATACGTGCATTTTGAGCTCATTTATCTCGGTTCCTATAAAAAGTAGCAGGAATCTGTCAACTGATACAATTTTGGAGATATAACGATAAATAATTTATTAGTTAATAGATTTTCGATACATTTTATTAGAACCGCGATAATTGAGCTTAAACTGAACGTATAGGGGCTTCTATCAAAGTACGGTATCAAACCTTCAAAAATCATTCCGATACTTATGCATTTTTCGAATCTACAACTTCTGCAGAAAATTGTGGGATCTAAAGG</canonical_amplicon>
		<polymorphic_amplicon>AACGTGAGACCTCGAATTTAGAGATTTGCTCCAATAGAAGCCCACCCTATACGTGCATTTTGAGCTCATTTATCTCGGTTCCTATAAAAAGTAGCAGGAATCTGTCAACTGATACAATTTTGGAGATATAACGATAAATAATTTATTAGTTAATAGATTTTCGATACATTTTATTAGAACCGCGATAATTGAGCTTAAACTGAACGTATAGGGGCTTCTATCAAAGTACGGTATCAAACYTTCAAAAATCATTCCGATACTTATGCATTTTTCGAATCTACAACTTCTGCAGAAAATTGTGGGATCTAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28110</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>742001</contig_pos>
        <strand></strand>
        <context>CTTGCTTATC[G/A]CATTTCTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AACATTTCAAAAGTTGAAATACCTGAAAAAGTGTGGCTGTCTTGCTTATC</left_flank>
        <right_flank>CATTTCTTCATTTTCCTCTTCTGAACACTTCGTTGGAAGAACATTTTACA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCTGTTGGGATGTCTGCAGCTGGAGATAGATGTCGAAATTTGTGAAGTCTTGGCTTTTCGGGTTTGCCAATTTAGGTTTCACTTGCTTGATATGACCTTCTGAATGAAAAACGTGAGACCTCGAATTTAGAGATTTGCTCCAATAGAAGCCCACCCTATACGTGCATTTTGAGCTCATTTATCTCGGTTCCTATAAAAAGTAGCAGGAATCTGTCAACTGATACAATTTTGGAGATATAACGATAAATAATTTATTAGTTAATAGATTTTCGATACATTTTATTAGAACCGCGATAATTGAGCTTAAACTGAACGTATAGGGGCTTCTATCAAAGTACGGTATCAAACCTTCAAAAATCATTCCGATACTTATGCATTTTTCGAATCTACAACTTCTGCAGAAAATTGTGGGATCTAAAGGAATCAGTTTTTTTTCCTTTTTTTTCAAACATTTCAAAAGTTGAAATACCTGAAAAAGTGTGGCTGTCTTGCTTATCGCATTTCTTCATTTTCCTCTTCTGAACACTTCGTTGGAAGAACATTTTACATTTAAAACATACACCGGGAAAGAATAATTTTTCATTTAGTTTCAAGTCGCAGACTTTGCAAGAGGGCAGCATCAGAATTTTCGGAAAATACTTAGATTCTACCCATATTTATGGCAGGGTTTTAGTTGATCAGAAAGTGATTACAAAGCTGATAGATAATCTTCCGCCCACAAGATTCTTCAATCGGGAAAGTGTTGAGTTGCTCTCATCTTCTGAAAGCTAGAATACATCTCGTGTATTTGAACAAATCTCATAAGAGGAAATATTTTTGATGGCGATAAAATCTGATTAAGATGAAAATAATCATTATCCTAAAAGGTTTTTGTTTGGTGTTGGTGGGAAAATTTTTGAAGAGAGATTTATGAAAAATCTAAAGAAGATCGGGAGACAAAAAAAACTAACTTCTGTGGTCCCAAGACACTTGAGGGCACCCTGAAAAAATAAGGGACC</canonical>
            <polymorphic>AATCTGTTGGGATGTCTGCAGCTGGAGATAGATGTCGAAATTTGTGAAGTCTTGGCTTTTCGGGTTTGCCAATTTAGGTTTCACTTGCTTGATATGACCTTCTGAATGAAAAACGTGAGACCTCGAATTTAGAGATTTGCTCCAATAGAAGCCCACCCTATACGTGCATTTTGAGCTCATTTATCTCGGTTCCTATAAAAAGTAGCAGGAATCTGTCAACTGATACAATTTTGGAGATATAACGATAAATAATTTATTAGTTAATAGATTTTCGATACATTTTATTAGAACCGCGATAATTGAGCTTAAACTGAACGTATAGGGGCTTCTATCAAAGTACGGTATCAAACCTTCAAAAATCATTCCGATACTTATGCATTTTTCGAATCTACAACTTCTGCAGAAAATTGTGGGATCTAAAGGAATCAGTTTTTTTTCCTTTTTTTTCAAACATTTCAAAAGTTGAAATACCTGAAAAAGTGTGGCTGTCTTGCTTATCRCATTTCTTCATTTTCCTCTTCTGAACACTTCGTTGGAAGAACATTTTACATTTAAAACATACACCGGGAAAGAATAATTTTTCATTTAGTTTCAAGTCGCAGACTTTGCAAGAGGGCAGCATCAGAATTTTCGGAAAATACTTAGATTCTACCCATATTTATGGCAGGGTTTTAGTTGATCAGAAAGTGATTACAAAGCTGATAGATAATCTTCCGCCCACAAGATTCTTCAATCGGGAAAGTGTTGAGTTGCTCTCATCTTCTGAAAGCTAGAATACATCTCGTGTATTTGAACAAATCTCATAAGAGGAAATATTTTTGATGGCGATAAAATCTGATTAAGATGAAAATAATCATTATCCTAAAAGGTTTTTGTTTGGTGTTGGTGGGAAAATTTTTGAAGAGAGATTTATGAAAAATCTAAAGAAGATCGGGAGACAAAAAAAACTAACTTCTGTGGTCCCAAGACACTTGAGGGCACCCTGAAAAAATAAGGGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAAAAATCATTCCGATACTTA</pcr_primer_p1>
		<pcr_primer_p2>CGACTTGAAACTAAATGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTCAAAAATCATTCCGATACTTATGCATTTTTCGAATCTACAACTTCTGCAGAAAATTGTGGGATCTAAAGGAATCAGTTTTTTTTCCTTTTTTTTCAAACATTTCAAAAGTTGAAATACCTGAAAAAGTGTGGCTGTCTTGCTTATCGCATTTCTTCATTTTCCTCTTCTGAACACTTCGTTGGAAGAACATTTTACATTTAAAACATACACCGGGAAAGAATAATTTTTCATTTAGTTTCAAGTCG</canonical_amplicon>
		<polymorphic_amplicon>TTCAAAAATCATTCCGATACTTATGCATTTTTCGAATCTACAACTTCTGCAGAAAATTGTGGGATCTAAAGGAATCAGTTTTTTTTCCTTTTTTTTCAAACATTTCAAAAGTTGAAATACCTGAAAAAGTGTGGCTGTCTTGCTTATCRCATTTCTTCATTTTCCTCTTCTGAACACTTCGTTGGAAGAACATTTTACATTTAAAACATACACCGGGAAAGAATAATTTTTCATTTAGTTTCAAGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28111</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>742035</contig_pos>
        <strand></strand>
        <context>AACACTTCGT[T/C]GGAAGAACAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGCTGTCTTGCTTATCGCATTTCTTCATTTTCCTCTTCTGAACACTTCGT</left_flank>
        <right_flank>GGAAGAACATTTTACATTTAAAACATACACCGGGAAAGAATAATTTTTCA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGAAATTTGTGAAGTCTTGGCTTTTCGGGTTTGCCAATTTAGGTTTCACTTGCTTGATATGACCTTCTGAATGAAAAACGTGAGACCTCGAATTTAGAGATTTGCTCCAATAGAAGCCCACCCTATACGTGCATTTTGAGCTCATTTATCTCGGTTCCTATAAAAAGTAGCAGGAATCTGTCAACTGATACAATTTTGGAGATATAACGATAAATAATTTATTAGTTAATAGATTTTCGATACATTTTATTAGAACCGCGATAATTGAGCTTAAACTGAACGTATAGGGGCTTCTATCAAAGTACGGTATCAAACCTTCAAAAATCATTCCGATACTTATGCATTTTTCGAATCTACAACTTCTGCAGAAAATTGTGGGATCTAAAGGAATCAGTTTTTTTTCCTTTTTTTTCAAACATTTCAAAAGTTGAAATACCTGAAAAAGTGTGGCTGTCTTGCTTATCGCATTTCTTCATTTTCCTCTTCTGAACACTTCGTTGGAAGAACATTTTACATTTAAAACATACACCGGGAAAGAATAATTTTTCATTTAGTTTCAAGTCGCAGACTTTGCAAGAGGGCAGCATCAGAATTTTCGGAAAATACTTAGATTCTACCCATATTTATGGCAGGGTTTTAGTTGATCAGAAAGTGATTACAAAGCTGATAGATAATCTTCCGCCCACAAGATTCTTCAATCGGGAAAGTGTTGAGTTGCTCTCATCTTCTGAAAGCTAGAATACATCTCGTGTATTTGAACAAATCTCATAAGAGGAAATATTTTTGATGGCGATAAAATCTGATTAAGATGAAAATAATCATTATCCTAAAAGGTTTTTGTTTGGTGTTGGTGGGAAAATTTTTGAAGAGAGATTTATGAAAAATCTAAAGAAGATCGGGAGACAAAAAAAACTAACTTCTGTGGTCCCAAGACACTTGAGGGCACCCTGAAAAAATAAGGGACCCAAAACATGGATTATGAAAAATACCGTATTCCCT</canonical>
            <polymorphic>TCGAAATTTGTGAAGTCTTGGCTTTTCGGGTTTGCCAATTTAGGTTTCACTTGCTTGATATGACCTTCTGAATGAAAAACGTGAGACCTCGAATTTAGAGATTTGCTCCAATAGAAGCCCACCCTATACGTGCATTTTGAGCTCATTTATCTCGGTTCCTATAAAAAGTAGCAGGAATCTGTCAACTGATACAATTTTGGAGATATAACGATAAATAATTTATTAGTTAATAGATTTTCGATACATTTTATTAGAACCGCGATAATTGAGCTTAAACTGAACGTATAGGGGCTTCTATCAAAGTACGGTATCAAACCTTCAAAAATCATTCCGATACTTATGCATTTTTCGAATCTACAACTTCTGCAGAAAATTGTGGGATCTAAAGGAATCAGTTTTTTTTCCTTTTTTTTCAAACATTTCAAAAGTTGAAATACCTGAAAAAGTGTGGCTGTCTTGCTTATCGCATTTCTTCATTTTCCTCTTCTGAACACTTCGTYGGAAGAACATTTTACATTTAAAACATACACCGGGAAAGAATAATTTTTCATTTAGTTTCAAGTCGCAGACTTTGCAAGAGGGCAGCATCAGAATTTTCGGAAAATACTTAGATTCTACCCATATTTATGGCAGGGTTTTAGTTGATCAGAAAGTGATTACAAAGCTGATAGATAATCTTCCGCCCACAAGATTCTTCAATCGGGAAAGTGTTGAGTTGCTCTCATCTTCTGAAAGCTAGAATACATCTCGTGTATTTGAACAAATCTCATAAGAGGAAATATTTTTGATGGCGATAAAATCTGATTAAGATGAAAATAATCATTATCCTAAAAGGTTTTTGTTTGGTGTTGGTGGGAAAATTTTTGAAGAGAGATTTATGAAAAATCTAAAGAAGATCGGGAGACAAAAAAAACTAACTTCTGTGGTCCCAAGACACTTGAGGGCACCCTGAAAAAATAAGGGACCCAAAACATGGATTATGAAAAATACCGTATTCCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGTTGAAATACCTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATCAGCTTTGTAATCACTTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGTTGAAATACCTGAAAAAGTGTGGCTGTCTTGCTTATCGCATTTCTTCATTTTCCTCTTCTGAACACTTCGTTGGAAGAACATTTTACATTTAAAACATACACCGGGAAAGAATAATTTTTCATTTAGTTTCAAGTCGCAGACTTTGCAAGAGGGCAGCATCAGAATTTTCGGAAAATACTTAGATTCTACCCATATTTATGGCAGGGTTTTAGTTGATCAGAAAGTGATTACAAAGCTGAT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGTTGAAATACCTGAAAAAGTGTGGCTGTCTTGCTTATCGCATTTCTTCATTTTCCTCTTCTGAACACTTCGTYGGAAGAACATTTTACATTTAAAACATACACCGGGAAAGAATAATTTTTCATTTAGTTTCAAGTCGCAGACTTTGCAAGAGGGCAGCATCAGAATTTTCGGAAAATACTTAGATTCTACCCATATTTATGGCAGGGTTTTAGTTGATCAGAAAGTGATTACAAAGCTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28112</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>742153</contig_pos>
        <strand></strand>
        <context>TTAGATTCTA[C/G]CCATATTTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GACTTTGCAAGAGGGCAGCATCAGAATTTTCGGAAAATACTTAGATTCTA</left_flank>
        <right_flank>CCATATTTATGGCAGGGTTTTAGTTGATCAGAAAGTGATTACAAAGCTGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACCCTATACGTGCATTTTGAGCTCATTTATCTCGGTTCCTATAAAAAGTAGCAGGAATCTGTCAACTGATACAATTTTGGAGATATAACGATAAATAATTTATTAGTTAATAGATTTTCGATACATTTTATTAGAACCGCGATAATTGAGCTTAAACTGAACGTATAGGGGCTTCTATCAAAGTACGGTATCAAACCTTCAAAAATCATTCCGATACTTATGCATTTTTCGAATCTACAACTTCTGCAGAAAATTGTGGGATCTAAAGGAATCAGTTTTTTTTCCTTTTTTTTCAAACATTTCAAAAGTTGAAATACCTGAAAAAGTGTGGCTGTCTTGCTTATCGCATTTCTTCATTTTCCTCTTCTGAACACTTCGTTGGAAGAACATTTTACATTTAAAACATACACCGGGAAAGAATAATTTTTCATTTAGTTTCAAGTCGCAGACTTTGCAAGAGGGCAGCATCAGAATTTTCGGAAAATACTTAGATTCTACCCATATTTATGGCAGGGTTTTAGTTGATCAGAAAGTGATTACAAAGCTGATAGATAATCTTCCGCCCACAAGATTCTTCAATCGGGAAAGTGTTGAGTTGCTCTCATCTTCTGAAAGCTAGAATACATCTCGTGTATTTGAACAAATCTCATAAGAGGAAATATTTTTGATGGCGATAAAATCTGATTAAGATGAAAATAATCATTATCCTAAAAGGTTTTTGTTTGGTGTTGGTGGGAAAATTTTTGAAGAGAGATTTATGAAAAATCTAAAGAAGATCGGGAGACAAAAAAAACTAACTTCTGTGGTCCCAAGACACTTGAGGGCACCCTGAAAAAATAAGGGACCCAAAACATGGATTATGAAAAATACCGTATTCCCTCCAATAGAAGCTCAGCTAAACCGTCAACTTTGAGCTCAATTATCTCGCTTCCTGTAAAAGATAGAAAAAAGTTGGCAACTGATGAAATATTGGTGTTATCATGTTAAACAGCCTAAAG</canonical>
            <polymorphic>CCACCCTATACGTGCATTTTGAGCTCATTTATCTCGGTTCCTATAAAAAGTAGCAGGAATCTGTCAACTGATACAATTTTGGAGATATAACGATAAATAATTTATTAGTTAATAGATTTTCGATACATTTTATTAGAACCGCGATAATTGAGCTTAAACTGAACGTATAGGGGCTTCTATCAAAGTACGGTATCAAACCTTCAAAAATCATTCCGATACTTATGCATTTTTCGAATCTACAACTTCTGCAGAAAATTGTGGGATCTAAAGGAATCAGTTTTTTTTCCTTTTTTTTCAAACATTTCAAAAGTTGAAATACCTGAAAAAGTGTGGCTGTCTTGCTTATCGCATTTCTTCATTTTCCTCTTCTGAACACTTCGTTGGAAGAACATTTTACATTTAAAACATACACCGGGAAAGAATAATTTTTCATTTAGTTTCAAGTCGCAGACTTTGCAAGAGGGCAGCATCAGAATTTTCGGAAAATACTTAGATTCTASCCATATTTATGGCAGGGTTTTAGTTGATCAGAAAGTGATTACAAAGCTGATAGATAATCTTCCGCCCACAAGATTCTTCAATCGGGAAAGTGTTGAGTTGCTCTCATCTTCTGAAAGCTAGAATACATCTCGTGTATTTGAACAAATCTCATAAGAGGAAATATTTTTGATGGCGATAAAATCTGATTAAGATGAAAATAATCATTATCCTAAAAGGTTTTTGTTTGGTGTTGGTGGGAAAATTTTTGAAGAGAGATTTATGAAAAATCTAAAGAAGATCGGGAGACAAAAAAAACTAACTTCTGTGGTCCCAAGACACTTGAGGGCACCCTGAAAAAATAAGGGACCCAAAACATGGATTATGAAAAATACCGTATTCCCTCCAATAGAAGCTCAGCTAAACCGTCAACTTTGAGCTCAATTATCTCGCTTCCTGTAAAAGATAGAAAAAAGTTGGCAACTGATGAAATATTGGTGTTATCATGTTAAACAGCCTAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTTCCTCTTCTGAACACTT</pcr_primer_p1>
		<pcr_primer_p2>TGAGAGCAACTCAACACTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTTTCCTCTTCTGAACACTTCGTTGGAAGAACATTTTACATTTAAAACATACACCGGGAAAGAATAATTTTTCATTTAGTTTCAAGTCGCAGACTTTGCAAGAGGGCAGCATCAGAATTTTCGGAAAATACTTAGATTCTACCCATATTTATGGCAGGGTTTTAGTTGATCAGAAAGTGATTACAAAGCTGATAGATAATCTTCCGCCCACAAGATTCTTCAATCGGGAAAGTGTTGAGTTGCTCTCA</canonical_amplicon>
		<polymorphic_amplicon>CATTTTCCTCTTCTGAACACTTCGTTGGAAGAACATTTTACATTTAAAACATACACCGGGAAAGAATAATTTTTCATTTAGTTTCAAGTCGCAGACTTTGCAAGAGGGCAGCATCAGAATTTTCGGAAAATACTTAGATTCTASCCATATTTATGGCAGGGTTTTAGTTGATCAGAAAGTGATTACAAAGCTGATAGATAATCTTCCGCCCACAAGATTCTTCAATCGGGAAAGTGTTGAGTTGCTCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28113</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>744829</contig_pos>
        <strand></strand>
        <context>taggggcctt[T/C]cttttacagg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGATATCAGTGACAAGAACCGAGAAAAATTTGCTCAAAGTTAGGGGCCTT</left_flank>
        <right_flank>CTTTTACAGGTTTTATTTAGGAAGTGATAACCGAAGGATCCTATTGGTTC</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTACTAACTATTCTCATAGTTTCAAAGTCTCCAAAGACAATGGGCTCCTACAAGTATTTGATGGTTTTTATGGCGTGCTTTGAGTTTTTCTATGCAATCATTGATCTACTGATTAAGCCGGTAATTTTAATTGAAAGAATTTCAATAAAAGTGTCTCCCCTGTTATGTTCGAGCTGATATTTCTCGGTTCCTATAAGAGATATCAAAAATGTATCAACTGTTGAAATATTGCTGATATAATGATAAACATTTTGTCAGTTGACTACTTTTTGATATCTCTGGCAGGAACCGAAATATATGAGCTCAAACTTGACGATTTGGGTGACCGAACTTGTAGACCGTATATTTTAGTCCATTTATCTTGGTTCATGTGCAAGATATCAAAAATGTGTCAACTGATAAAATGTTTAAGATGTTATGATAAGCAATTTATCCATTGATCACTTTTTGATATCAGTGACAAGAACCGAGAAAAATTTGCTCAAAGTTAGGGGCCTTTCTTTTACAGGTTTTATTTAGGAAGTGATAACCGAAGGATCCTATTGGTTCACTTCTAGAAATTCAAATCGATTCATTCTACCACTGACTATTGCTTACCCATTGTTATGTAAGCTCAAACTTGAAAATTACCGAAAATTTTTATTTCTTAGTAATCTGGGCATGCTCATTTGGATTCGCTTTGGCCTGTTTTGGAGTGCACTTTAATTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGAAAAGATGTAACCGGTAGAAAAGGAAAAATAGGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACATGGGAACAATTGAAGAAAACTAGTCAGAGGA</canonical>
            <polymorphic>CTTACTAACTATTCTCATAGTTTCAAAGTCTCCAAAGACAATGGGCTCCTACAAGTATTTGATGGTTTTTATGGCGTGCTTTGAGTTTTTCTATGCAATCATTGATCTACTGATTAAGCCGGTAATTTTAATTGAAAGAATTTCAATAAAAGTGTCTCCCCTGTTATGTTCGAGCTGATATTTCTCGGTTCCTATAAGAGATATCAAAAATGTATCAACTGTTGAAATATTGCTGATATAATGATAAACATTTTGTCAGTTGACTACTTTTTGATATCTCTGGCAGGAACCGAAATATATGAGCTCAAACTTGACGATTTGGGTGACCGAACTTGTAGACCGTATATTTTAGTCCATTTATCTTGGTTCATGTGCAAGATATCAAAAATGTGTCAACTGATAAAATGTTTAAGATGTTATGATAAGCAATTTATCCATTGATCACTTTTTGATATCAGTGACAAGAACCGAGAAAAATTTGCTCAAAGTTAGGGGCCTTYCTTTTACAGGTTTTATTTAGGAAGTGATAACCGAAGGATCCTATTGGTTCACTTCTAGAAATTCAAATCGATTCATTCTACCACTGACTATTGCTTACCCATTGTTATGTAAGCTCAAACTTGAAAATTACCGAAAATTTTTATTTCTTAGTAATCTGGGCATGCTCATTTGGATTCGCTTTGGCCTGTTTTGGAGTGCACTTTAATTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGAAAAGATGTAACCGGTAGAAAAGGAAAAATAGGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACATGGGAACAATTGAAGAAAACTAGTCAGAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTAATTTTAATTGAAAGAATTT</pcr_primer_p1>
		<pcr_primer_p2>AAGCAATAGTCAGTGGTAGAATG</pcr_primer_p2>
		<pcr_amplicon_size>477</pcr_amplicon_size>
		<canonical_amplicon>CGGTAATTTTAATTGAAAGAATTTCAATAAAAGTGTCTCCCCTGTTATGTTCGAGCTGATATTTCTCGGTTCCTATAAGAGATATCAAAAATGTATCAACTGTTGAAATATTGCTGATATAATGATAAACATTTTGTCAGTTGACTACTTTTTGATATCTCTGGCAGGAACCGAAATATATGAGCTCAAACTTGACGATTTGGGTGACCGAACTTGTAGACCGTATATTTTAGTCCATTTATCTTGGTTCATGTGCAAGATATCAAAAATGTGTCAACTGATAAAATGTTTAAGATGTTATGATAAGCAATTTATCCATTGATCACTTTTTGATATCAGTGACAAGAACCGAGAAAAATTTGCTCAAAGTTAGGGGCCTTTCTTTTACAGGTTTTATTTAGGAAGTGATAACCGAAGGATCCTATTGGTTCACTTCTAGAAATTCAAATCGATTCATTCTACCACTGACTATTGCTT</canonical_amplicon>
		<polymorphic_amplicon>CGGTAATTTTAATTGAAAGAATTTCAATAAAAGTGTCTCCCCTGTTATGTTCGAGCTGATATTTCTCGGTTCCTATAAGAGATATCAAAAATGTATCAACTGTTGAAATATTGCTGATATAATGATAAACATTTTGTCAGTTGACTACTTTTTGATATCTCTGGCAGGAACCGAAATATATGAGCTCAAACTTGACGATTTGGGTGACCGAACTTGTAGACCGTATATTTTAGTCCATTTATCTTGGTTCATGTGCAAGATATCAAAAATGTGTCAACTGATAAAATGTTTAAGATGTTATGATAAGCAATTTATCCATTGATCACTTTTTGATATCAGTGACAAGAACCGAGAAAAATTTGCTCAAAGTTAGGGGCCTTYCTTTTACAGGTTTTATTTAGGAAGTGATAACCGAAGGATCCTATTGGTTCACTTCTAGAAATTCAAATCGATTCATTCTACCACTGACTATTGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28114</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>744887</contig_pos>
        <strand>+</strand>
        <context>TTCACTTCTA[C/G]AAATTCAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGGTTTTATTTAGGAAGTGATAACCGAAGGATCCTATTGGTTCACTTCTA</left_flank>
        <right_flank>AAATTCAAATCGATTCATTCTACCACTGACTATTGCTTACCCATTGTTAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGATGGTTTTTATGGCGTGCTTTGAGTTTTTCTATGCAATCATTGATCTACTGATTAAGCCGGTAATTTTAATTGAAAGAATTTCAATAAAAGTGTCTCCCCTGTTATGTTCGAGCTGATATTTCTCGGTTCCTATAAGAGATATCAAAAATGTATCAACTGTTGAAATATTGCTGATATAATGATAAACATTTTGTCAGTTGACTACTTTTTGATATCTCTGGCAGGAACCGAAATATATGAGCTCAAACTTGACGATTTGGGTGACCGAACTTGTAGACCGTATATTTTAGTCCATTTATCTTGGTTCATGTGCAAGATATCAAAAATGTGTCAACTGATAAAATGTTTAAGATGTTATGATAAGCAATTTATCCATTGATCACTTTTTGATATCAGTGACAAGAACCGAGAAAAATTTGCTCAAAGTTAGGGGCCTTTCTTTTACAGGTTTTATTTAGGAAGTGATAACCGAAGGATCCTATTGGTTCACTTCTAGAAATTCAAATCGATTCATTCTACCACTGACTATTGCTTACCCATTGTTATGTAAGCTCAAACTTGAAAATTACCGAAAATTTTTATTTCTTAGTAATCTGGGCATGCTCATTTGGATTCGCTTTGGCCTGTTTTGGAGTGCACTTTAATTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGAAAAGATGTAACCGGTAGAAAAGGAAAAATAGGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACATGGGAACAATTGAAGAAAACTAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACA</canonical>
            <polymorphic>TTGATGGTTTTTATGGCGTGCTTTGAGTTTTTCTATGCAATCATTGATCTACTGATTAAGCCGGTAATTTTAATTGAAAGAATTTCAATAAAAGTGTCTCCCCTGTTATGTTCGAGCTGATATTTCTCGGTTCCTATAAGAGATATCAAAAATGTATCAACTGTTGAAATATTGCTGATATAATGATAAACATTTTGTCAGTTGACTACTTTTTGATATCTCTGGCAGGAACCGAAATATATGAGCTCAAACTTGACGATTTGGGTGACCGAACTTGTAGACCGTATATTTTAGTCCATTTATCTTGGTTCATGTGCAAGATATCAAAAATGTGTCAACTGATAAAATGTTTAAGATGTTATGATAAGCAATTTATCCATTGATCACTTTTTGATATCAGTGACAAGAACCGAGAAAAATTTGCTCAAAGTTAGGGGCCTTTCTTTTACAGGTTTTATTTAGGAAGTGATAACCGAAGGATCCTATTGGTTCACTTCTASAAATTCAAATCGATTCATTCTACCACTGACTATTGCTTACCCATTGTTATGTAAGCTCAAACTTGAAAATTACCGAAAATTTTTATTTCTTAGTAATCTGGGCATGCTCATTTGGATTCGCTTTGGCCTGTTTTGGAGTGCACTTTAATTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGAAAAGATGTAACCGGTAGAAAAGGAAAAATAGGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACATGGGAACAATTGAAGAAAACTAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>497 434 69</canonical_bands>
                <polymorphic_bands>931 69</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>497 279 224</canonical_bands>
                <polymorphic_bands>721 279</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGTAATTTTAATTGAAAGAATTT</pcr_primer_p1>
		<pcr_primer_p2>TCAAGTTTGAGCTTACATAACAA</pcr_primer_p2>
		<pcr_amplicon_size>505</pcr_amplicon_size>
		<canonical_amplicon>CGGTAATTTTAATTGAAAGAATTTCAATAAAAGTGTCTCCCCTGTTATGTTCGAGCTGATATTTCTCGGTTCCTATAAGAGATATCAAAAATGTATCAACTGTTGAAATATTGCTGATATAATGATAAACATTTTGTCAGTTGACTACTTTTTGATATCTCTGGCAGGAACCGAAATATATGAGCTCAAACTTGACGATTTGGGTGACCGAACTTGTAGACCGTATATTTTAGTCCATTTATCTTGGTTCATGTGCAAGATATCAAAAATGTGTCAACTGATAAAATGTTTAAGATGTTATGATAAGCAATTTATCCATTGATCACTTTTTGATATCAGTGACAAGAACCGAGAAAAATTTGCTCAAAGTTAGGGGCCTTTCTTTTACAGGTTTTATTTAGGAAGTGATAACCGAAGGATCCTATTGGTTCACTTCTAGAAATTCAAATCGATTCATTCTACCACTGACTATTGCTTACCCATTGTTATGTAAGCTCAAACTTGA</canonical_amplicon>
		<polymorphic_amplicon>CGGTAATTTTAATTGAAAGAATTTCAATAAAAGTGTCTCCCCTGTTATGTTCGAGCTGATATTTCTCGGTTCCTATAAGAGATATCAAAAATGTATCAACTGTTGAAATATTGCTGATATAATGATAAACATTTTGTCAGTTGACTACTTTTTGATATCTCTGGCAGGAACCGAAATATATGAGCTCAAACTTGACGATTTGGGTGACCGAACTTGTAGACCGTATATTTTAGTCCATTTATCTTGGTTCATGTGCAAGATATCAAAAATGTGTCAACTGATAAAATGTTTAAGATGTTATGATAAGCAATTTATCCATTGATCACTTTTTGATATCAGTGACAAGAACCGAGAAAAATTTGCTCAAAGTTAGGGGCCTTTCTTTTACAGGTTTTATTTAGGAAGTGATAACCGAAGGATCCTATTGGTTCACTTCTASAAATTCAAATCGATTCATTCTACCACTGACTATTGCTTACCCATTGTTATGTAAGCTCAAACTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28115</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>744902</contig_pos>
        <strand>+</strand>
        <context>TCAAATCGAT[C/T]CATTCTACCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTGATAACCGAAGGATCCTATTGGTTCACTTCTAGAAATTCAAATCGAT</left_flank>
        <right_flank>CATTCTACCACTGACTATTGCTTACCCATTGTTATGTAAGCTCAAACTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGTGCTTTGAGTTTTTCTATGCAATCATTGATCTACTGATTAAGCCGGTAATTTTAATTGAAAGAATTTCAATAAAAGTGTCTCCCCTGTTATGTTCGAGCTGATATTTCTCGGTTCCTATAAGAGATATCAAAAATGTATCAACTGTTGAAATATTGCTGATATAATGATAAACATTTTGTCAGTTGACTACTTTTTGATATCTCTGGCAGGAACCGAAATATATGAGCTCAAACTTGACGATTTGGGTGACCGAACTTGTAGACCGTATATTTTAGTCCATTTATCTTGGTTCATGTGCAAGATATCAAAAATGTGTCAACTGATAAAATGTTTAAGATGTTATGATAAGCAATTTATCCATTGATCACTTTTTGATATCAGTGACAAGAACCGAGAAAAATTTGCTCAAAGTTAGGGGCCTTTCTTTTACAGGTTTTATTTAGGAAGTGATAACCGAAGGATCCTATTGGTTCACTTCTAGAAATTCAAATCGATTCATTCTACCACTGACTATTGCTTACCCATTGTTATGTAAGCTCAAACTTGAAAATTACCGAAAATTTTTATTTCTTAGTAATCTGGGCATGCTCATTTGGATTCGCTTTGGCCTGTTTTGGAGTGCACTTTAATTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGAAAAGATGTAACCGGTAGAAAAGGAAAAATAGGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACATGGGAACAATTGAAGAAAACTAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTA</canonical>
            <polymorphic>GCGTGCTTTGAGTTTTTCTATGCAATCATTGATCTACTGATTAAGCCGGTAATTTTAATTGAAAGAATTTCAATAAAAGTGTCTCCCCTGTTATGTTCGAGCTGATATTTCTCGGTTCCTATAAGAGATATCAAAAATGTATCAACTGTTGAAATATTGCTGATATAATGATAAACATTTTGTCAGTTGACTACTTTTTGATATCTCTGGCAGGAACCGAAATATATGAGCTCAAACTTGACGATTTGGGTGACCGAACTTGTAGACCGTATATTTTAGTCCATTTATCTTGGTTCATGTGCAAGATATCAAAAATGTGTCAACTGATAAAATGTTTAAGATGTTATGATAAGCAATTTATCCATTGATCACTTTTTGATATCAGTGACAAGAACCGAGAAAAATTTGCTCAAAGTTAGGGGCCTTTCTTTTACAGGTTTTATTTAGGAAGTGATAACCGAAGGATCCTATTGGTTCACTTCTAGAAATTCAAATCGATYCATTCTACCACTGACTATTGCTTACCCATTGTTATGTAAGCTCAAACTTGAAAATTACCGAAAATTTTTATTTCTTAGTAATCTGGGCATGCTCATTTGGATTCGCTTTGGCCTGTTTTGGAGTGCACTTTAATTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGAAAAGATGTAACCGGTAGAAAAGGAAAAATAGGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACATGGGAACAATTGAAGAAAACTAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>497 161 152 103 87</canonical_bands>
                <polymorphic_bands>600 161 152 87</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>497 239 161 103</canonical_bands>
                <polymorphic_bands>600 239 161</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAGTGATAACCGAAGGAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTGAGTCTTTCATGTCCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGAAGTGATAACCGAAGGATCCTATTGGTTCACTTCTAGAAATTCAAATCGATTCATTCTACCACTGACTATTGCTTACCCATTGTTATGTAAGCTCAAACTTGAAAATTACCGAAAATTTTTATTTCTTAGTAATCTGGGCATGCTCATTTGGATTCGCTTTGGCCTGTTTTGGAGTGCACTTTAATTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGAAGTGATAACCGAAGGATCCTATTGGTTCACTTCTAGAAATTCAAATCGATYCATTCTACCACTGACTATTGCTTACCCATTGTTATGTAAGCTCAAACTTGAAAATTACCGAAAATTTTTATTTCTTAGTAATCTGGGCATGCTCATTTGGATTCGCTTTGGCCTGTTTTGGAGTGCACTTTAATTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28116</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>744976</contig_pos>
        <strand>+</strand>
        <context>ATTTTTATTT[C/T]TTAGTAATCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCCATTGTTATGTAAGCTCAAACTTGAAAATTACCGAAAATTTTTATTT</left_flank>
        <right_flank>TTAGTAATCTGGGCATGCTCATTTGGATTCGCTTTGGCCTGTTTTGGAGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAGTGTCTCCCCTGTTATGTTCGAGCTGATATTTCTCGGTTCCTATAAGAGATATCAAAAATGTATCAACTGTTGAAATATTGCTGATATAATGATAAACATTTTGTCAGTTGACTACTTTTTGATATCTCTGGCAGGAACCGAAATATATGAGCTCAAACTTGACGATTTGGGTGACCGAACTTGTAGACCGTATATTTTAGTCCATTTATCTTGGTTCATGTGCAAGATATCAAAAATGTGTCAACTGATAAAATGTTTAAGATGTTATGATAAGCAATTTATCCATTGATCACTTTTTGATATCAGTGACAAGAACCGAGAAAAATTTGCTCAAAGTTAGGGGCCTTTCTTTTACAGGTTTTATTTAGGAAGTGATAACCGAAGGATCCTATTGGTTCACTTCTAGAAATTCAAATCGATTCATTCTACCACTGACTATTGCTTACCCATTGTTATGTAAGCTCAAACTTGAAAATTACCGAAAATTTTTATTTCTTAGTAATCTGGGCATGCTCATTTGGATTCGCTTTGGCCTGTTTTGGAGTGCACTTTAATTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGAAAAGATGTAACCGGTAGAAAAGGAAAAATAGGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACATGGGAACAATTGAAGAAAACTAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGAAAGTAGGCGGAGCCATTTAAAATTTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGACGAATGGA</canonical>
            <polymorphic>AAAAGTGTCTCCCCTGTTATGTTCGAGCTGATATTTCTCGGTTCCTATAAGAGATATCAAAAATGTATCAACTGTTGAAATATTGCTGATATAATGATAAACATTTTGTCAGTTGACTACTTTTTGATATCTCTGGCAGGAACCGAAATATATGAGCTCAAACTTGACGATTTGGGTGACCGAACTTGTAGACCGTATATTTTAGTCCATTTATCTTGGTTCATGTGCAAGATATCAAAAATGTGTCAACTGATAAAATGTTTAAGATGTTATGATAAGCAATTTATCCATTGATCACTTTTTGATATCAGTGACAAGAACCGAGAAAAATTTGCTCAAAGTTAGGGGCCTTTCTTTTACAGGTTTTATTTAGGAAGTGATAACCGAAGGATCCTATTGGTTCACTTCTAGAAATTCAAATCGATTCATTCTACCACTGACTATTGCTTACCCATTGTTATGTAAGCTCAAACTTGAAAATTACCGAAAATTTTTATTTYTTAGTAATCTGGGCATGCTCATTTGGATTCGCTTTGGCCTGTTTTGGAGTGCACTTTAATTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGAAAAGATGTAACCGGTAGAAAAGGAAAAATAGGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACATGGGAACAATTGAAGAAAACTAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGAAAGTAGGCGGAGCCATTTAAAATTTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGACGAATGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 356 115 29</canonical_bands>
                <polymorphic_bands>615 356 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTACCACTGACTATTGCTTACC</pcr_primer_p1>
		<pcr_primer_p2>CAAATATCTAAATTATCCCGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TCTACCACTGACTATTGCTTACCCATTGTTATGTAAGCTCAAACTTGAAAATTACCGAAAATTTTTATTTCTTAGTAATCTGGGCATGCTCATTTGGATTCGCTTTGGCCTGTTTTGGAGTGCACTTTAATTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTG</canonical_amplicon>
		<polymorphic_amplicon>TCTACCACTGACTATTGCTTACCCATTGTTATGTAAGCTCAAACTTGAAAATTACCGAAAATTTTTATTTYTTAGTAATCTGGGCATGCTCATTTGGATTCGCTTTGGCCTGTTTTGGAGTGCACTTTAATTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28117</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>745165</contig_pos>
        <strand></strand>
        <context>TTTGACACAG[A/G]AAARATGTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAG</left_flank>
        <right_flank>AAAGATGTAACCGGTAGAAAAGGAAAAATAGGGGAGCAAATATATCAATA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACCGTATATTTTAGTCCATTTATCTTGGTTCATGTGCAAGATATCAAAAATGTGTCAACTGATAAAATGTTTAAGATGTTATGATAAGCAATTTATCCATTGATCACTTTTTGATATCAGTGACAAGAACCGAGAAAAATTTGCTCAAAGTTAGGGGCCTTTCTTTTACAGGTTTTATTTAGGAAGTGATAACCGAAGGATCCTATTGGTTCACTTCTAGAAATTCAAATCGATTCATTCTACCACTGACTATTGCTTACCCATTGTTATGTAAGCTCAAACTTGAAAATTACCGAAAATTTTTATTTCTTAGTAATCTGGGCATGCTCATTTGGATTCGCTTTGGCCTGTTTTGGAGTGCACTTTAATTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGAAAAGATGTAACCGGTAGAAAAGGAAAAATAGGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACATGGGAACAATTGAAGAAAACTAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGAAAGTAGGCGGAGCCATTTAAAATTTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGACGAATGGAGAACATATTGAGGATAGAGACACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTGAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAAAACATAACATTCGAAAAGATGAAT</canonical>
            <polymorphic>AGACCGTATATTTTAGTCCATTTATCTTGGTTCATGTGCAAGATATCAAAAATGTGTCAACTGATAAAATGTTTAAGATGTTATGATAAGCAATTTATCCATTGATCACTTTTTGATATCAGTGACAAGAACCGAGAAAAATTTGCTCAAAGTTAGGGGCCTTTCTTTTACAGGTTTTATTTAGGAAGTGATAACCGAAGGATCCTATTGGTTCACTTCTAGAAATTCAAATCGATTCATTCTACCACTGACTATTGCTTACCCATTGTTATGTAAGCTCAAACTTGAAAATTACCGAAAATTTTTATTTCTTAGTAATCTGGGCATGCTCATTTGGATTCGCTTTGGCCTGTTTTGGAGTGCACTTTAATTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGRAAAGATGTAACCGGTAGAAAAGGAAAAATAGGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACATGGGAACAATTGAAGAAAACTAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGAAAGTAGGCGGAGCCATTTAAAATTTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGACGAATGGAGAACATATTGAGGATAGAGACACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTGAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAAAACATAACATTCGAAAAGATGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACATGAAAGACTCAGAAAAATG</pcr_primer_p1>
		<pcr_primer_p2>AACTCTTGGATTTCTTGGATTAC</pcr_primer_p2>
		<pcr_amplicon_size>895</pcr_amplicon_size>
		<canonical_amplicon>GACATGAAAGACTCAGAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGAAAAGATGTAACCGGTAGAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GACATGAAAGACTCAGAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGRAAAGATGTAACCGGTAGAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28118</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>745169</contig_pos>
        <strand></strand>
        <context>ACACAGRAAA[G/A]ATGTAACCGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGAAAA</left_flank>
        <right_flank>ATGTAACCGGTAGAAAAGGAAAAATAGGGGAGCAAATATATCAATAACGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTATATTTTAGTCCATTTATCTTGGTTCATGTGCAAGATATCAAAAATGTGTCAACTGATAAAATGTTTAAGATGTTATGATAAGCAATTTATCCATTGATCACTTTTTGATATCAGTGACAAGAACCGAGAAAAATTTGCTCAAAGTTAGGGGCCTTTCTTTTACAGGTTTTATTTAGGAAGTGATAACCGAAGGATCCTATTGGTTCACTTCTAGAAATTCAAATCGATTCATTCTACCACTGACTATTGCTTACCCATTGTTATGTAAGCTCAAACTTGAAAATTACCGAAAATTTTTATTTCTTAGTAATCTGGGCATGCTCATTTGGATTCGCTTTGGCCTGTTTTGGAGTGCACTTTAATTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGAAAAGATGTAACCGGTAGAAAAGGAAAAATAGGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACATGGGAACAATTGAAGAAAACTAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGAAAGTAGGCGGAGCCATTTAAAATTTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGACGAATGGAGAACATATTGAGGATAGAGACACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTGAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAAAACATAACATTCGAAAAGATGAATGTAG</canonical>
            <polymorphic>CGTATATTTTAGTCCATTTATCTTGGTTCATGTGCAAGATATCAAAAATGTGTCAACTGATAAAATGTTTAAGATGTTATGATAAGCAATTTATCCATTGATCACTTTTTGATATCAGTGACAAGAACCGAGAAAAATTTGCTCAAAGTTAGGGGCCTTTCTTTTACAGGTTTTATTTAGGAAGTGATAACCGAAGGATCCTATTGGTTCACTTCTAGAAATTCAAATCGATTCATTCTACCACTGACTATTGCTTACCCATTGTTATGTAAGCTCAAACTTGAAAATTACCGAAAATTTTTATTTCTTAGTAATCTGGGCATGCTCATTTGGATTCGCTTTGGCCTGTTTTGGAGTGCACTTTAATTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGAAAARATGTAACCGGTAGAAAAGGAAAAATAGGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACATGGGAACAATTGAAGAAAACTAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGAAAGTAGGCGGAGCCATTTAAAATTTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGACGAATGGAGAACATATTGAGGATAGAGACACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTGAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAAAACATAACATTCGAAAAGATGAATGTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACATGAAAGACTCAGAAAAATG</pcr_primer_p1>
		<pcr_primer_p2>AACTCTTGGATTTCTTGGATTAC</pcr_primer_p2>
		<pcr_amplicon_size>895</pcr_amplicon_size>
		<canonical_amplicon>GACATGAAAGACTCAGAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGAAAAGATGTAACCGGTAGAAAAGGAAA</canonical_amplicon>
		<polymorphic_amplicon>GACATGAAAGACTCAGAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGAAAARATGTAACCGGTAGAAAAGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28119</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>745185</contig_pos>
        <strand></strand>
        <context>ACCGGTAGAA[A/G]AGGAAAAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAACGGGATAATTTAGATATTTGACACAGAAAAGATGTAACCGGTAGAA</left_flank>
        <right_flank>AGGAAAAATAGGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATCTTGGTTCATGTGCAAGATATCAAAAATGTGTCAACTGATAAAATGTTTAAGATGTTATGATAAGCAATTTATCCATTGATCACTTTTTGATATCAGTGACAAGAACCGAGAAAAATTTGCTCAAAGTTAGGGGCCTTTCTTTTACAGGTTTTATTTAGGAAGTGATAACCGAAGGATCCTATTGGTTCACTTCTAGAAATTCAAATCGATTCATTCTACCACTGACTATTGCTTACCCATTGTTATGTAAGCTCAAACTTGAAAATTACCGAAAATTTTTATTTCTTAGTAATCTGGGCATGCTCATTTGGATTCGCTTTGGCCTGTTTTGGAGTGCACTTTAATTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGAAAAGATGTAACCGGTAGAAAAGGAAAAATAGGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACATGGGAACAATTGAAGAAAACTAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGAAAGTAGGCGGAGCCATTTAAAATTTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGACGAATGGAGAACATATTGAGGATAGAGACACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTGAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAAAACATAACATTCGAAAAGATGAATGTAGAATTCTGGAGACTTAG</canonical>
            <polymorphic>TTTATCTTGGTTCATGTGCAAGATATCAAAAATGTGTCAACTGATAAAATGTTTAAGATGTTATGATAAGCAATTTATCCATTGATCACTTTTTGATATCAGTGACAAGAACCGAGAAAAATTTGCTCAAAGTTAGGGGCCTTTCTTTTACAGGTTTTATTTAGGAAGTGATAACCGAAGGATCCTATTGGTTCACTTCTAGAAATTCAAATCGATTCATTCTACCACTGACTATTGCTTACCCATTGTTATGTAAGCTCAAACTTGAAAATTACCGAAAATTTTTATTTCTTAGTAATCTGGGCATGCTCATTTGGATTCGCTTTGGCCTGTTTTGGAGTGCACTTTAATTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGAAAAGATGTAACCGGTAGAARAGGAAAAATAGGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACATGGGAACAATTGAAGAAAACTAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGAAAGTAGGCGGAGCCATTTAAAATTTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGACGAATGGAGAACATATTGAGGATAGAGACACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTGAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAAAACATAACATTCGAAAAGATGAATGTAGAATTCTGGAGACTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGAAACGGGATAATTTAGA</pcr_primer_p1>
		<pcr_primer_p2>AACTCTTGGATTTCTTGGATTAC</pcr_primer_p2>
		<pcr_amplicon_size>842</pcr_amplicon_size>
		<canonical_amplicon>GGGAAACGGGATAATTTAGATATTTGACACAGAAAAGATGTAACCGGTAGAAAAGGAAAAATAGGGGAGCAAATA</canonical_amplicon>
		<polymorphic_amplicon>GGGAAACGGGATAATTTAGATATTTGACACAGAAAAGATGTAACCGGTAGAARAGGAAAAATAGGGGAGCAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28120</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>745219</contig_pos>
        <strand></strand>
        <context>ATCaataacg[G/A]gtaatactgg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GATGTAACCGGTAGAAAAGGAAAAATAGGGGAGCAAATATATCAATAACG</left_flank>
        <right_flank>GTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCAACTGATAAAATGTTTAAGATGTTATGATAAGCAATTTATCCATTGATCACTTTTTGATATCAGTGACAAGAACCGAGAAAAATTTGCTCAAAGTTAGGGGCCTTTCTTTTACAGGTTTTATTTAGGAAGTGATAACCGAAGGATCCTATTGGTTCACTTCTAGAAATTCAAATCGATTCATTCTACCACTGACTATTGCTTACCCATTGTTATGTAAGCTCAAACTTGAAAATTACCGAAAATTTTTATTTCTTAGTAATCTGGGCATGCTCATTTGGATTCGCTTTGGCCTGTTTTGGAGTGCACTTTAATTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGAAAAGATGTAACCGGTAGAAAAGGAAAAATAGGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACATGGGAACAATTGAAGAAAACTAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGAAAGTAGGCGGAGCCATTTAAAATTTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGACGAATGGAGAACATATTGAGGATAGAGACACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTGAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAAAACATAACATTCGAAAAGATGAATGTAGAATTCTGGAGACTTAGATCTAAATGACTTTAAGAGTTGTTTGGAACGGAG</canonical>
            <polymorphic>TGTCAACTGATAAAATGTTTAAGATGTTATGATAAGCAATTTATCCATTGATCACTTTTTGATATCAGTGACAAGAACCGAGAAAAATTTGCTCAAAGTTAGGGGCCTTTCTTTTACAGGTTTTATTTAGGAAGTGATAACCGAAGGATCCTATTGGTTCACTTCTAGAAATTCAAATCGATTCATTCTACCACTGACTATTGCTTACCCATTGTTATGTAAGCTCAAACTTGAAAATTACCGAAAATTTTTATTTCTTAGTAATCTGGGCATGCTCATTTGGATTCGCTTTGGCCTGTTTTGGAGTGCACTTTAATTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGAAAAGATGTAACCGGTAGAAAAGGAAAAATAGGGGAGCAAATATATCAATAACGRGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACATGGGAACAATTGAAGAAAACTAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGAAAGTAGGCGGAGCCATTTAAAATTTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGACGAATGGAGAACATATTGAGGATAGAGACACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTGAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAAAACATAACATTCGAAAAGATGAATGTAGAATTCTGGAGACTTAGATCTAAATGACTTTAAGAGTTGTTTGGAACGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGGATAATTTAGATATTTGACA</pcr_primer_p1>
		<pcr_primer_p2>AACTCTTGGATTTCTTGGATTAC</pcr_primer_p2>
		<pcr_amplicon_size>836</pcr_amplicon_size>
		<canonical_amplicon>CGGGATAATTTAGATATTTGACACAGAAAAGATGTAACCGGTAGAAAAGGAAAAATAGGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGG</canonical_amplicon>
		<polymorphic_amplicon>CGGGATAATTTAGATATTTGACACAGAAAAGATGTAACCGGTAGAAAAGGAAAAATAGGGGAGCAAATATATCAATAACGRGTAATACTGGAAGAAATTAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28121</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>745299</contig_pos>
        <strand></strand>
        <context>gcgttccaca[T/G]gggaacaatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACA</left_flank>
        <right_flank>GGGAACAATTGAAGAAAACTAGTCAGAGGAGTAGGGCTGAACAATAATTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAAAATTTGCTCAAAGTTAGGGGCCTTTCTTTTACAGGTTTTATTTAGGAAGTGATAACCGAAGGATCCTATTGGTTCACTTCTAGAAATTCAAATCGATTCATTCTACCACTGACTATTGCTTACCCATTGTTATGTAAGCTCAAACTTGAAAATTACCGAAAATTTTTATTTCTTAGTAATCTGGGCATGCTCATTTGGATTCGCTTTGGCCTGTTTTGGAGTGCACTTTAATTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGAAAAGATGTAACCGGTAGAAAAGGAAAAATAGGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACATGGGAACAATTGAAGAAAACTAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGAAAGTAGGCGGAGCCATTTAAAATTTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGACGAATGGAGAACATATTGAGGATAGAGACACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTGAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAAAACATAACATTCGAAAAGATGAATGTAGAATTCTGGAGACTTAGATCTAAATGACTTTAAGAGTTGTTTGGAACGGAGAAGAGCTAAAGATGTGATTTTGTTGATGTGAGCAGAGAATTTGAGAGAGGAATCAGTAATGAGTCCCAAGTCCCGGACGG</canonical>
            <polymorphic>AGAAAAATTTGCTCAAAGTTAGGGGCCTTTCTTTTACAGGTTTTATTTAGGAAGTGATAACCGAAGGATCCTATTGGTTCACTTCTAGAAATTCAAATCGATTCATTCTACCACTGACTATTGCTTACCCATTGTTATGTAAGCTCAAACTTGAAAATTACCGAAAATTTTTATTTCTTAGTAATCTGGGCATGCTCATTTGGATTCGCTTTGGCCTGTTTTGGAGTGCACTTTAATTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGAAAAGATGTAACCGGTAGAAAAGGAAAAATAGGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACAKGGGAACAATTGAAGAAAACTAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGAAAGTAGGCGGAGCCATTTAAAATTTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGACGAATGGAGAACATATTGAGGATAGAGACACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTGAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAAAACATAACATTCGAAAAGATGAATGTAGAATTCTGGAGACTTAGATCTAAATGACTTTAAGAGTTGTTTGGAACGGAGAAGAGCTAAAGATGTGATTTTGTTGATGTGAGCAGAGAATTTGAGAGAGGAATCAGTAATGAGTCCCAAGTCCCGGACGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>413 215 191 92 89</canonical_bands>
                <polymorphic_bands>413 304 191 92</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGGATAATTTAGATATTTGACA</pcr_primer_p1>
		<pcr_primer_p2>AACTCTTGGATTTCTTGGATTAC</pcr_primer_p2>
		<pcr_amplicon_size>836</pcr_amplicon_size>
		<canonical_amplicon>CGGGATAATTTAGATATTTGACACAGAAAAGATGTAACCGGTAGAAAAGGAAAAATAGGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACATGGGAACAATTGAAGAAAACTAG</canonical_amplicon>
		<polymorphic_amplicon>CGGGATAATTTAGATATTTGACACAGAAAAGATGTAACCGGTAGAAAAGGAAAAATAGGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACAKGGGAACAATTGAAGAAAACTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28122</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>745318</contig_pos>
        <strand></strand>
        <context>ttgaagaaaa[C/A]tagtcagagg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CGGGTAACTTGGGAAGTGATGGCGTTCCACATGGGAACAATTGAAGAAAA</left_flank>
        <right_flank>TAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGGGGCCTTTCTTTTACAGGTTTTATTTAGGAAGTGATAACCGAAGGATCCTATTGGTTCACTTCTAGAAATTCAAATCGATTCATTCTACCACTGACTATTGCTTACCCATTGTTATGTAAGCTCAAACTTGAAAATTACCGAAAATTTTTATTTCTTAGTAATCTGGGCATGCTCATTTGGATTCGCTTTGGCCTGTTTTGGAGTGCACTTTAATTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGAAAAGATGTAACCGGTAGAAAAGGAAAAATAGGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACATGGGAACAATTGAAGAAAACTAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGAAAGTAGGCGGAGCCATTTAAAATTTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGACGAATGGAGAACATATTGAGGATAGAGACACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTGAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAAAACATAACATTCGAAAAGATGAATGTAGAATTCTGGAGACTTAGATCTAAATGACTTTAAGAGTTGTTTGGAACGGAGAAGAGCTAAAGATGTGATTTTGTTGATGTGAGCAGAGAATTTGAGAGAGGAATCAGTAATGAGTCCCAAGTCCCGGACGGAGGAGGAGGGAGTAAGTTT</canonical>
            <polymorphic>TAGGGGCCTTTCTTTTACAGGTTTTATTTAGGAAGTGATAACCGAAGGATCCTATTGGTTCACTTCTAGAAATTCAAATCGATTCATTCTACCACTGACTATTGCTTACCCATTGTTATGTAAGCTCAAACTTGAAAATTACCGAAAATTTTTATTTCTTAGTAATCTGGGCATGCTCATTTGGATTCGCTTTGGCCTGTTTTGGAGTGCACTTTAATTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGAAAAGATGTAACCGGTAGAAAAGGAAAAATAGGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACATGGGAACAATTGAAGAAAAMTAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGAAAGTAGGCGGAGCCATTTAAAATTTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGACGAATGGAGAACATATTGAGGATAGAGACACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTGAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAAAACATAACATTCGAAAAGATGAATGTAGAATTCTGGAGACTTAGATCTAAATGACTTTAAGAGTTGTTTGGAACGGAGAAGAGCTAAAGATGTGATTTTGTTGATGTGAGCAGAGAATTTGAGAGAGGAATCAGTAATGAGTCCCAAGTCCCGGACGGAGGAGGAGGGAGTAAGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACTAGT</site>
                <isoschizomers>
                    <enzyme>AhlI</enzyme>
                    <enzyme>BcuI</enzyme>
                    <enzyme>SpeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>434 254 246 66</canonical_bands>
                <polymorphic_bands>688 246 66</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGGATAATTTAGATATTTGACA</pcr_primer_p1>
		<pcr_primer_p2>AACTCTTGGATTTCTTGGATTAC</pcr_primer_p2>
		<pcr_amplicon_size>836</pcr_amplicon_size>
		<canonical_amplicon>CGGGATAATTTAGATATTTGACACAGAAAAGATGTAACCGGTAGAAAAGGAAAAATAGGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACATGGGAACAATTGAAGAAAACTAGTCAGAGGAGTAGGGCTGAA</canonical_amplicon>
		<polymorphic_amplicon>CGGGATAATTTAGATATTTGACACAGAAAAGATGTAACCGGTAGAAAAGGAAAAATAGGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACATGGGAACAATTGAAGAAAAMTAGTCAGAGGAGTAGGGCTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28123</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748206</contig_pos>
        <strand></strand>
        <context>aaaaaaattt[A/G]aaaaaatttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTT</left_flank>
        <right_flank>AAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACGGTCAAGGGATGGAATTTTTCGAAATTTTTTTTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGT</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACGGTCAAGGGATGGAATTTTTCGAAATTTTTTTTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTRAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>355 298 201 146</canonical_bands>
                <polymorphic_bands>355 347 298</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>297 201 137 117 102 79 54 13</canonical_bands>
                <polymorphic_bands>297 255 137 117 102 79 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGTGTGTTCTAAATTTTCAC</pcr_primer_p1>
		<pcr_primer_p2>TGTATGTAATTTTTAAAGCTTGATTG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACA</canonical_amplicon>
		<polymorphic_amplicon>CGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTRAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28124</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748246</contig_pos>
        <strand>+</strand>
        <context>AAAAATTTTT[A/T]TCAGAWTTKR</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTT</left_flank>
        <right_flank>TCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACGGTCAAGGGATGGAATTTTTCGAAATTTTTTTTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAA</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACGGTCAAGGGATGGAATTTTTCGAAATTTTTTTTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTWTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTGTGTTCTAAATTTTCAC</pcr_primer_p1>
		<pcr_primer_p2>TGTATGTAATTTTTAAAGCTTGATTG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACA</canonical_amplicon>
		<polymorphic_amplicon>CGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTWTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28125</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748252</contig_pos>
        <strand>+</strand>
        <context>TTTTWTCAGA[A/T]TTKRATKAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGA</left_flank>
        <right_flank>TTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACGGTCAAGGGATGGAATTTTTCGAAATTTTTTTTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGT</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACGGTCAAGGGATGGAATTTTTCGAAATTTTTTTTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGAWTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTGTGTTCTAAATTTTCAC</pcr_primer_p1>
		<pcr_primer_p2>TGTATGTAATTTTTAAAGCTTGATTG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACA</canonical_amplicon>
		<polymorphic_amplicon>CGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGAWTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28126</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748255</contig_pos>
        <strand>+</strand>
        <context>TWTCAGAWTT[G/T/C]RATKAAACTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T/C</alleles>
        <left_flank>TAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTT</left_flank>
        <right_flank>GATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACGGTCAAGGGATGGAATTTTTCGAAATTTTTTTTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAA</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACGGTCAAGGGATGGAATTTTTCGAAATTTTTTTTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTKGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTGTGTTCTAAATTTTCAC</pcr_primer_p1>
		<pcr_primer_p2>TGTATGTAATTTTTAAAGCTTGATTG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACA</canonical_amplicon>
		<polymorphic_amplicon>CGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTKGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28127</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748256</contig_pos>
        <strand>+</strand>
        <context>WTCAGAWTTK[A/G]ATKAAACTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTT</left_flank>
        <right_flank>ATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACGGTCAAGGGATGGAATTTTTCGAAATTTTTTTTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAA</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACGGTCAAGGGATGGAATTTTTCGAAATTTTTTTTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTRATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTGTGTTCTAAATTTTCAC</pcr_primer_p1>
		<pcr_primer_p2>TGTATGTAATTTTTAAAGCTTGATTG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACA</canonical_amplicon>
		<polymorphic_amplicon>CGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTRATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28128</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748259</contig_pos>
        <strand>+</strand>
        <context>AGAWTTKRAT[G/T]AAACTTTGRA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGAT</left_flank>
        <right_flank>AAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACGGTCAAGGGATGGAATTTTTCGAAATTTTTTTTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAAC</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACGGTCAAGGGATGGAATTTTTCGAAATTTTTTTTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATKAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>244 201 155 137 117 79 54 13</canonical_bands>
                <polymorphic_bands>244 201 155 137 117 79 67</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGTGTGTTCTAAATTTTCAC</pcr_primer_p1>
		<pcr_primer_p2>TGTATGTAATTTTTAAAGCTTGATTG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACA</canonical_amplicon>
		<polymorphic_amplicon>CGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATKAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28129</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748268</contig_pos>
        <strand>+</strand>
        <context>TKAAACTTTG[A/G]ACTTAAGYTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTG</left_flank>
        <right_flank>ACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACGGTCAAGGGATGGAATTTTTCGAAATTTTTTTTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTA</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACGGTCAAGGGATGGAATTTTTCGAAATTTTTTTTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGRACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTGTGTTCTAAATTTTCAC</pcr_primer_p1>
		<pcr_primer_p2>TGTATGTAATTTTTAAAGCTTGATTG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACA</canonical_amplicon>
		<polymorphic_amplicon>CGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGRACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28130</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748276</contig_pos>
        <strand></strand>
        <context>TGRACTTAAG[C/T]TAATCAAATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAG</left_flank>
        <right_flank>TAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTT</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACGGTCAAGGGATGGAATTTTTCGAAATTTTTTTTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTA</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACGGTCAAGGGATGGAATTTTTCGAAATTTTTTTTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGYTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>499 372 72 57</canonical_bands>
                <polymorphic_bands>571 372 57</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>247 212 104 97 88 62 57 56 40 21 16</canonical_bands>
                <polymorphic_bands>247 228 104 97 88 62 57 56 40 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGTGTGTTCTAAATTTTCAC</pcr_primer_p1>
		<pcr_primer_p2>TGTATGTAATTTTTAAAGCTTGATTG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACA</canonical_amplicon>
		<polymorphic_amplicon>CGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGYTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28131</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748311</contig_pos>
        <strand>+</strand>
        <context>AAAAATAGTT[C/T]CGRAAGATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTT</left_flank>
        <right_flank>CGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACGGTCAAGGGATGGAATTTTTCGAAATTTTTTTTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCC</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACGGTCAAGGGATGGAATTTTTCGAAATTTTTTTTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTYCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTCTAAAATACTGAAAATTGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTGCAGTTTGAAAATTACG</pcr_primer_p2>
		<pcr_amplicon_size>397</pcr_amplicon_size>
		<canonical_amplicon>TGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTYCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28132</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748314</contig_pos>
        <strand>+</strand>
        <context>AATAGTTYCG[A/G]AAGATTTGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCG</left_flank>
        <right_flank>AAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACGGTCAAGGGATGGAATTTTTCGAAATTTTTTTTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAG</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACGGTCAAGGGATGGAATTTTTCGAAATTTTTTTTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGRAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTCTAAAATACTGAAAATTGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTGCAGTTTGAAAATTACG</pcr_primer_p2>
		<pcr_amplicon_size>397</pcr_amplicon_size>
		<canonical_amplicon>TGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGRAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28133</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748373</contig_pos>
        <strand>+</strand>
        <context>ACAAAAATTC[A/C]AAAAAATTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTC</left_flank>
        <right_flank>AAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNAAAAACGGTCAAGGGATGGAATTTTTCGAAATTTTTTTTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATT</canonical>
            <polymorphic>NNNNNNNNNNNNNNNAAAAACGGTCAAGGGATGGAATTTTTCGAAATTTTTTTTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCMAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTCTAAAATACTGAAAATTGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTGCAGTTTGAAAATTACG</pcr_primer_p2>
		<pcr_amplicon_size>397</pcr_amplicon_size>
		<canonical_amplicon>TGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCMAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28134</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748390</contig_pos>
        <strand>+</strand>
        <context>TTCAAACGCG[C/T]CTAAGTCRCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCG</left_flank>
        <right_flank>CTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACGGTCAAGGGATGGAATTTTTCGAAATTTTTTTTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTAC</canonical>
            <polymorphic>AAACGGTCAAGGGATGGAATTTTTCGAAATTTTTTTTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGYCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 250 245</canonical_bands>
                <polymorphic_bands>755 245</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGCGT</site>
                <isoschizomers>
                    <enzyme>MluI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCAATCAAGCTTTAAAAATTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGCAGTTTGAAAATTACG</pcr_primer_p2>
		<pcr_amplicon_size>213</pcr_amplicon_size>
		<canonical_amplicon>TGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGYCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28135</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748398</contig_pos>
        <strand>+</strand>
        <context>CGYCTAAGTC[A/G]CCCCAGCTTY</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTC</left_flank>
        <right_flank>CCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGGATGGAATTTTTCGAAATTTTTTTTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAG</canonical>
            <polymorphic>AAGGGATGGAATTTTTCGAAATTTTTTTTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCRCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCAATCAAGCTTTAAAAATTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGCAGTTTGAAAATTACG</pcr_primer_p2>
		<pcr_amplicon_size>213</pcr_amplicon_size>
		<canonical_amplicon>TGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCRCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28136</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748408</contig_pos>
        <strand>+</strand>
        <context>RCCCCAGCTT[C/T]AMCGTATCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTT</left_flank>
        <right_flank>ACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTCGAAATTTTTTTTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATA</canonical>
            <polymorphic>ATTTTTCGAAATTTTTTTTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTYACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCAATCAAGCTTTAAAAATTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGCAGTTTGAAAATTACG</pcr_primer_p2>
		<pcr_amplicon_size>213</pcr_amplicon_size>
		<canonical_amplicon>TGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTYACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28137</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748410</contig_pos>
        <strand>+</strand>
        <context>CCCAGCTTYA[A/C]CGTATCAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTA</left_flank>
        <right_flank>CGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCGAAATTTTTTTTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATG</canonical>
            <polymorphic>TTTTCGAAATTTTTTTTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTAMCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>354 259 242 105 27 13</canonical_bands>
                <polymorphic_bands>613 242 105 27 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCAATCAAGCTTTAAAAATTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGCAGTTTGAAAATTACG</pcr_primer_p2>
		<pcr_amplicon_size>213</pcr_amplicon_size>
		<canonical_amplicon>TGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTAMCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28138</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748424</contig_pos>
        <strand>+</strand>
        <context>ATCAAAAAAT[A/C]RAGTACTAAS</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAAT</left_flank>
        <right_flank>AAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATA</canonical>
            <polymorphic>TTTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATMAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCAATCAAGCTTTAAAAATTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGCAGTTTGAAAATTACG</pcr_primer_p2>
		<pcr_amplicon_size>213</pcr_amplicon_size>
		<canonical_amplicon>TGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATMAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28139</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748425</contig_pos>
        <strand>+</strand>
        <context>TCAAAAAATM[A/G]AGTACTAASA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATC</left_flank>
        <right_flank>AGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATAT</canonical>
            <polymorphic>TTGCCAAAAATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCRAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCAATCAAGCTTTAAAAATTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGCAGTTTGAAAATTACG</pcr_primer_p2>
		<pcr_amplicon_size>213</pcr_amplicon_size>
		<canonical_amplicon>TGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCRAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28140</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748434</contig_pos>
        <strand>+</strand>
        <context>MRAGTACTAA[C/G]AAAATGTGYA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAA</left_flank>
        <right_flank>AAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTC</canonical>
            <polymorphic>ATGATGTACACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAASAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCAATCAAGCTTTAAAAATTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGCAGTTTGAAAATTACG</pcr_primer_p2>
		<pcr_amplicon_size>213</pcr_amplicon_size>
		<canonical_amplicon>TGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAASAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28141</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748443</contig_pos>
        <strand>+</strand>
        <context>ASAAAATGTG[C/T]AAAATCAAAM</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTG</left_flank>
        <right_flank>AAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAA</canonical>
            <polymorphic>ACACAAAGCAAAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGYAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>396 216 113 103 103 36 33</canonical_bands>
                <polymorphic_bands>396 216 206 113 36 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCAATCAAGCTTTAAAAATTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGCAGTTTGAAAATTACG</pcr_primer_p2>
		<pcr_amplicon_size>213</pcr_amplicon_size>
		<canonical_amplicon>TGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGYAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28142</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748453</contig_pos>
        <strand>+</strand>
        <context>YAAAATCAAA[A/C]GWTCTACRAC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAA</left_flank>
        <right_flank>GTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTAT</canonical>
            <polymorphic>AAAGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAAMGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCAATCAAGCTTTAAAAATTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGCAGTTTGAAAATTACG</pcr_primer_p2>
		<pcr_amplicon_size>213</pcr_amplicon_size>
		<canonical_amplicon>TGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAAMGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28143</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748455</contig_pos>
        <strand>+</strand>
        <context>AAATCAAAMG[A/T]TCTACRACMT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACG</left_flank>
        <right_flank>TCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGA</canonical>
            <polymorphic>AGATAGTAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGWTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCAATCAAGCTTTAAAAATTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGCAGTTTGAAAATTACG</pcr_primer_p2>
		<pcr_amplicon_size>213</pcr_amplicon_size>
		<canonical_amplicon>TGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGWTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28144</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748461</contig_pos>
        <strand>+</strand>
        <context>AAMGWTCTAC[A/G]ACMTTTAYTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTAC</left_flank>
        <right_flank>ACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTA</canonical>
            <polymorphic>TAACATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACRACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCAATCAAGCTTTAAAAATTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGCAGTTTGAAAATTACG</pcr_primer_p2>
		<pcr_amplicon_size>213</pcr_amplicon_size>
		<canonical_amplicon>TGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACRACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28145</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748464</contig_pos>
        <strand>+</strand>
        <context>GWTCTACRAC[A/C]TTTAYTATTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAAC</left_flank>
        <right_flank>TTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAA</canonical>
            <polymorphic>CATACTCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACMTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCAATCAAGCTTTAAAAATTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGCAGTTTGAAAATTACG</pcr_primer_p2>
		<pcr_amplicon_size>213</pcr_amplicon_size>
		<canonical_amplicon>TGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACMTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28146</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748469</contig_pos>
        <strand>+</strand>
        <context>ACRACMTTTA[C/T]TATTARRACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTA</left_flank>
        <right_flank>TATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAA</canonical>
            <polymorphic>TCAGGGAATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTAYTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCAATCAAGCTTTAAAAATTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGCAGTTTGAAAATTACG</pcr_primer_p2>
		<pcr_amplicon_size>213</pcr_amplicon_size>
		<canonical_amplicon>TGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTAYTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28147</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748475</contig_pos>
        <strand></strand>
        <context>TTTAYTATTA[G/A]RACTTTTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTA</left_flank>
        <right_flank>GACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTT</canonical>
            <polymorphic>AATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTARGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCAATCAAGCTTTAAAAATTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGCAGTTTGAAAATTACG</pcr_primer_p2>
		<pcr_amplicon_size>213</pcr_amplicon_size>
		<canonical_amplicon>TGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTARGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28148</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748476</contig_pos>
        <strand></strand>
        <context>TTAYTATTAR[G/A]ACTTTTTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAG</left_flank>
        <right_flank>ACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTT</canonical>
            <polymorphic>ATCGAACTTGGGGGGTTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGRACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCAATCAAGCTTTAAAAATTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGCAGTTTGAAAATTACG</pcr_primer_p2>
		<pcr_amplicon_size>213</pcr_amplicon_size>
		<canonical_amplicon>TGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGRACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28149</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748491</contig_pos>
        <strand>+</strand>
        <context>TTTTGATTAA[A/G]GCCGTCGYTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAA</left_flank>
        <right_flank>GCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACC</canonical>
            <polymorphic>TTTTTGAGATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAARGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>212 104 97 91 88 86 80 57 56 40 32 21 20 16</canonical_bands>
                <polymorphic_bands>212 109 104 97 91 86 80 57 56 40 32 20 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCAATCAAGCTTTAAAAATTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGCAGTTTGAAAATTACG</pcr_primer_p2>
		<pcr_amplicon_size>213</pcr_amplicon_size>
		<canonical_amplicon>TGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAARGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28150</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748499</contig_pos>
        <strand>+</strand>
        <context>AARGCCGTCG[C/T]TACCRAGTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCG</left_flank>
        <right_flank>TACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAAT</canonical>
            <polymorphic>ATTTTAAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGYTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGCTTTAAAAATTACATACAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACTATCTTTTTGGTCCATCGT</pcr_primer_p2>
		<pcr_amplicon_size>394</pcr_amplicon_size>
		<canonical_amplicon>CAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGT</canonical_amplicon>
		<polymorphic_amplicon>CAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGYTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28151</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748504</contig_pos>
        <strand>+</strand>
        <context>CGTCGYTACC[A/G]AGTTATKGGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACC</left_flank>
        <right_flank>AGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGG</canonical>
            <polymorphic>AAAAAATTCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCRAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGCTTTAAAAATTACATACAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACTATCTTTTTGGTCCATCGT</pcr_primer_p2>
		<pcr_amplicon_size>394</pcr_amplicon_size>
		<canonical_amplicon>CAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGT</canonical_amplicon>
		<polymorphic_amplicon>CAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCRAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28152</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748511</contig_pos>
        <strand>+</strand>
        <context>ACCRAGTTAT[G/T]GGCYMAAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTAT</left_flank>
        <right_flank>GGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCA</canonical>
            <polymorphic>TCCATTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATKGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGGCCA</site>
                <isoschizomers>
                    <enzyme>BalI</enzyme>
                    <enzyme>MlsI</enzyme>
                    <enzyme>MluNI</enzyme>
                    <enzyme>MscI</enzyme>
                    <enzyme>Msp20I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 287 213</canonical_bands>
                <polymorphic_bands>787 213</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGCTTTAAAAATTACATACAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACTATCTTTTTGGTCCATCGT</pcr_primer_p2>
		<pcr_amplicon_size>394</pcr_amplicon_size>
		<canonical_amplicon>CAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGT</canonical_amplicon>
		<polymorphic_amplicon>CAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATKGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28153</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748515</contig_pos>
        <strand>+</strand>
        <context>AGTTATKGGC[C/T]MAAAACTAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGC</left_flank>
        <right_flank>AAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAA</canonical>
            <polymorphic>TTTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCYAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGGCCA</site>
                <isoschizomers>
                    <enzyme>BalI</enzyme>
                    <enzyme>MlsI</enzyme>
                    <enzyme>MluNI</enzyme>
                    <enzyme>MscI</enzyme>
                    <enzyme>Msp20I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>498 287 195 20</canonical_bands>
                <polymorphic_bands>785 195 20</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>496 287 217</canonical_bands>
                <polymorphic_bands>783 217</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>212 115 104 97 88 86 80 57 56 40 21 20 16 8</canonical_bands>
                <polymorphic_bands>212 118 115 104 88 86 80 57 56 40 20 16 8</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGCTTTAAAAATTACATACAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACTATCTTTTTGGTCCATCGT</pcr_primer_p2>
		<pcr_amplicon_size>394</pcr_amplicon_size>
		<canonical_amplicon>CAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGT</canonical_amplicon>
		<polymorphic_amplicon>CAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCYAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28154</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748516</contig_pos>
        <strand>+</strand>
        <context>GTTATKGGCY[A/C]AAAACTAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCC</left_flank>
        <right_flank>AAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAA</canonical>
            <polymorphic>TTTGAAGCCAAAAGTGAATTTTCACTATTTGAAGCGCCATAACTCGGCTCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCMAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGGCCA</site>
                <isoschizomers>
                    <enzyme>BalI</enzyme>
                    <enzyme>MlsI</enzyme>
                    <enzyme>MluNI</enzyme>
                    <enzyme>MscI</enzyme>
                    <enzyme>Msp20I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>495 287 218</canonical_bands>
                <polymorphic_bands>782 218</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGCTTTAAAAATTACATACAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACTATCTTTTTGGTCCATCGT</pcr_primer_p2>
		<pcr_amplicon_size>394</pcr_amplicon_size>
		<canonical_amplicon>CAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGT</canonical_amplicon>
		<polymorphic_amplicon>CAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCMAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28155</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748564</contig_pos>
        <strand>+</strand>
        <context>AAATTTGTAC[G/T]RTCAGAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTAC</left_flank>
        <right_flank>ATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTA</canonical>
            <polymorphic>TCAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACKATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>362 178 176 133 121 30</canonical_bands>
                <polymorphic_bands>362 309 178 121 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGCTTTAAAAATTACATACAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACTATCTTTTTGGTCCATCGT</pcr_primer_p2>
		<pcr_amplicon_size>394</pcr_amplicon_size>
		<canonical_amplicon>CAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGT</canonical_amplicon>
		<polymorphic_amplicon>CAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACKATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28156</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748565</contig_pos>
        <strand>+</strand>
        <context>AATTTGTACK[A/G]TCAGAATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACT</left_flank>
        <right_flank>TCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTAC</canonical>
            <polymorphic>CAAAGTGGACCAATCCTTTCGATAGAAAAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTRTCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGCTTTAAAAATTACATACAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACTATCTTTTTGGTCCATCGT</pcr_primer_p2>
		<pcr_amplicon_size>394</pcr_amplicon_size>
		<canonical_amplicon>CAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGT</canonical_amplicon>
		<polymorphic_amplicon>CAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTRTCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28157</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748592</contig_pos>
        <strand></strand>
        <context>TTCACATATT[C/T]TACTAAAMAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATT</left_flank>
        <right_flank>TACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTACTCCCCAATAGCTCTACTACAAAAAAAG</canonical>
            <polymorphic>AAACCAAAATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTYTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTACTCCCCAATAGCTCTACTACAAAAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGCTTTAAAAATTACATACAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACTATCTTTTTGGTCCATCGT</pcr_primer_p2>
		<pcr_amplicon_size>394</pcr_amplicon_size>
		<canonical_amplicon>CAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGT</canonical_amplicon>
		<polymorphic_amplicon>CAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTYTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28158</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748600</contig_pos>
        <strand></strand>
        <context>TTYTACTAAA[A/C]AAATTAMGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAA</left_flank>
        <right_flank>AAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGC</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTACTCCCCAATAGCTCTACTACAAAAAAAGTTATGACC</canonical>
            <polymorphic>ATGTGTGTTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAMAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTACTCCCCAATAGCTCTACTACAAAAAAAGTTATGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGCTTTAAAAATTACATACAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACTATCTTTTTGGTCCATCGT</pcr_primer_p2>
		<pcr_amplicon_size>394</pcr_amplicon_size>
		<canonical_amplicon>CAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGT</canonical_amplicon>
		<polymorphic_amplicon>CAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAMAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28159</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748607</contig_pos>
        <strand></strand>
        <context>AAAMAAATTA[A/C]GGGCTTYCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTA</left_flank>
        <right_flank>GGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTT</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTACTCCCCAATAGCTCTACTACAAAAAAAGTTATGACCAAAATAA</canonical>
            <polymorphic>TTTCGGTGTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAMGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTACTCCCCAATAGCTCTACTACAAAAAAAGTTATGACCAAAATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>355 148 137 117 97 79 54 13</canonical_bands>
                <polymorphic_bands>472 148 137 97 79 54 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGCTTTAAAAATTACATACAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACTATCTTTTTGGTCCATCGT</pcr_primer_p2>
		<pcr_amplicon_size>394</pcr_amplicon_size>
		<canonical_amplicon>CAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGT</canonical_amplicon>
		<polymorphic_amplicon>CAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAMGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28160</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748614</contig_pos>
        <strand>+</strand>
        <context>TTAMGGGCTT[C/T]CAAATRAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTT</left_flank>
        <right_flank>CAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTACTCCCCAATAGCTCTACTACAAAAAAAGTTATGACCAAAATAAAAATTTC</canonical>
            <polymorphic>GTGTTCTAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTYCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTACTCCCCAATAGCTCTACTACAAAAAAAGTTATGACCAAAATAAAAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGCTTTAAAAATTACATACAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACTATCTTTTTGGTCCATCGT</pcr_primer_p2>
		<pcr_amplicon_size>394</pcr_amplicon_size>
		<canonical_amplicon>CAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGT</canonical_amplicon>
		<polymorphic_amplicon>CAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTYCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28161</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748620</contig_pos>
        <strand>+</strand>
        <context>GCTTYCAAAT[A/G]AATATAGYCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAAT</left_flank>
        <right_flank>AATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACC</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTACTCCCCAATAGCTCTACTACAAAAAAAGTTATGACCAAAATAAAAATTTCGAAAAA</canonical>
            <polymorphic>TAAATTTTCACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATRAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTACTCCCCAATAGCTCTACTACAAAAAAAGTTATGACCAAAATAAAAATTTCGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGCTTTAAAAATTACATACAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACTATCTTTTTGGTCCATCGT</pcr_primer_p2>
		<pcr_amplicon_size>394</pcr_amplicon_size>
		<canonical_amplicon>CAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGT</canonical_amplicon>
		<polymorphic_amplicon>CAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATRAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28162</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748628</contig_pos>
        <strand></strand>
        <context>ATRAATATAG[T/C]CTCTACCACT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAG</left_flank>
        <right_flank>CTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCA</right_flank>
        <qual_score>35</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTACTCCCCAATAGCTCTACTACAAAAAAAGTTATGACCAAAATAAAAATTTCGAAAAAAAGTTTGT</canonical>
            <polymorphic>CACAATACATGTCAAAAGGGTACCGTGTTTCTAAAATACTGAAAATTGAAAAAACTACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGYCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTACTCCCCAATAGCTCTACTACAAAAAAAGTTATGACCAAAATAAAAATTTCGAAAAAAAGTTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGCTTTAAAAATTACATACAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACTATCTTTTTGGTCCATCGT</pcr_primer_p2>
		<pcr_amplicon_size>394</pcr_amplicon_size>
		<canonical_amplicon>CAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGT</canonical_amplicon>
		<polymorphic_amplicon>CAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGYCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28163</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748683</contig_pos>
        <strand></strand>
        <context>GGGGCAACAA[C/T]TTTTTTTTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAA</left_flank>
        <right_flank>TTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGA</right_flank>
        <qual_score>35</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTACTCCCCAATAGCTCTACTACAAAAAAAGTTATGACCAAAATAAAAATTTCGAAAAAAAGTTTGTATGGGGCGTACCGTCTTTGGGGTGGACCATTTTGGGAATTAAAAAAAACTATATT</canonical>
            <polymorphic>TACTTTTTTTGAAAAAAAATTTAAAAAAATTTTTTCAAAAAAAAAAATCTCGAAAAATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAAYTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTACTCCCCAATAGCTCTACTACAAAAAAAGTTATGACCAAAATAAAAATTTCGAAAAAAAGTTTGTATGGGGCGTACCGTCTTTGGGGTGGACCATTTTGGGAATTAAAAAAAACTATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGCTTTAAAAATTACATACAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACTATCTTTTTGGTCCATCGT</pcr_primer_p2>
		<pcr_amplicon_size>394</pcr_amplicon_size>
		<canonical_amplicon>CAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGT</canonical_amplicon>
		<polymorphic_amplicon>CAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAAYTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28164</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748738</contig_pos>
        <strand>+</strand>
        <context>AAAAGATAGT[A/T]MTACCAAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGT</left_flank>
        <right_flank>CTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTACTCCCCAATAGCTCTACTACAAAAAAAGTTATGACCAAAATAAAAATTTCGAAAAAAAGTTTGTATGGGGCGTACCGTCTTTGGGGTGGACCATTTTGGGAATTAAAAAAAACTATATTTTTTATTTTTTGAGAGCTACCTATTCTGAAAATTTGGGCCGATTTGGAGATGGTG</canonical>
            <polymorphic>AATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTWCTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTACTCCCCAATAGCTCTACTACAAAAAAAGTTATGACCAAAATAAAAATTTCGAAAAAAAGTTTGTATGGGGCGTACCGTCTTTGGGGTGGACCATTTTGGGAATTAAAAAAAACTATATTTTTTATTTTTTGAGAGCTACCTATTCTGAAAATTTGGGCCGATTTGGAGATGGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGTACT</site>
                <isoschizomers>
                    <enzyme>Acc113I</enzyme>
                    <enzyme>ScaI</enzyme>
                </isoschizomers>
                <canonical_bands>309 190 175 175 151</canonical_bands>
                <polymorphic_bands>460 190 175 175</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>190 139 133 121 101 81 74 70 36 30 25</canonical_bands>
                <polymorphic_bands>190 139 133 121 101 100 81 74 36 25</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>188 177 176 175 133 121 30</canonical_bands>
                <polymorphic_bands>206 188 177 175 133 121</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGCAATAGCGTACCAT</pcr_primer_p1>
		<pcr_primer_p2>ACTACAACATGGTGCAATCA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTWCTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28165</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748739</contig_pos>
        <strand></strand>
        <context>AAAGATAGTW[C/A]TACCAAAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTA</left_flank>
        <right_flank>TACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTACTCCCCAATAGCTCTACTACAAAAAAAGTTATGACCAAAATAAAAATTTCGAAAAAAAGTTTGTATGGGGCGTACCGTCTTTGGGGTGGACCATTTTGGGAATTAAAAAAAACTATATTTTTTATTTTTTGAGAGCTACCTATTCTGAAAATTTGGGCCGATTTGGAGATGGTGA</canonical>
            <polymorphic>ATTTTTTTCAGATTTTGATTAAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTAMTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTACTCCCCAATAGCTCTACTACAAAAAAAGTTATGACCAAAATAAAAATTTCGAAAAAAAGTTTGTATGGGGCGTACCGTCTTTGGGGTGGACCATTTTGGGAATTAAAAAAAACTATATTTTTTATTTTTTGAGAGCTACCTATTCTGAAAATTTGGGCCGATTTGGAGATGGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGTACT</site>
                <isoschizomers>
                    <enzyme>Acc113I</enzyme>
                    <enzyme>ScaI</enzyme>
                </isoschizomers>
                <canonical_bands>309 189 176 175 151</canonical_bands>
                <polymorphic_bands>460 189 176 175</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>189 139 133 121 102 81 74 70 36 30 25</canonical_bands>
                <polymorphic_bands>189 139 133 121 102 100 81 74 36 25</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>187 178 176 175 133 121 30</canonical_bands>
                <polymorphic_bands>206 187 178 175 133 121</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGCAATAGCGTACCAT</pcr_primer_p1>
		<pcr_primer_p2>ACTACAACATGGTGCAATCA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTAMTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28166</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748759</contig_pos>
        <strand>+</strand>
        <context>ATGTAAAAAA[C/T]CAAACTGTAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAA</left_flank>
        <right_flank>CAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTACTCCCCAATAGCTCTACTACAAAAAAAGTTATGACCAAAATAAAAATTTCGAAAAAAAGTTTGTATGGGGCGTACCGTCTTTGGGGTGGACCATTTTGGGAATTAAAAAAAACTATATTTTTTATTTTTTGAGAGCTACCTATTCTGAAAATTTGGGCCGATTTGGAGATGGTGACCCCCTTTACCTCACGCCAA</canonical>
            <polymorphic>AAACTTTGGACTTAAGCTAATCAAATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAAYCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTACTCCCCAATAGCTCTACTACAAAAAAAGTTATGACCAAAATAAAAATTTCGAAAAAAAGTTTGTATGGGGCGTACCGTCTTTGGGGTGGACCATTTTGGGAATTAAAAAAAACTATATTTTTTATTTTTTGAGAGCTACCTATTCTGAAAATTTGGGCCGATTTGGAGATGGTGACCCCCTTTACCTCACGCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGCAATAGCGTACCAT</pcr_primer_p1>
		<pcr_primer_p2>ACTACAACATGGTGCAATCA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAAYCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28167</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748783</contig_pos>
        <strand>+</strand>
        <context>ATTACTGTTT[A/G]GACCWTTTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTT</left_flank>
        <right_flank>GACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTACTCCCCAATAGCTCTACTACAAAAAAAGTTATGACCAAAATAAAAATTTCGAAAAAAAGTTTGTATGGGGCGTACCGTCTTTGGGGTGGACCATTTTGGGAATTAAAAAAAACTATATTTTTTATTTTTTGAGAGCTACCTATTCTGAAAATTTGGGCCGATTTGGAGATGGTGACCCCCTTTACCTCACGCCAAATAGCGCAGGCTGCGCCTGCGCCT</canonical>
            <polymorphic>ATGTCGGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTRGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTACTCCCCAATAGCTCTACTACAAAAAAAGTTATGACCAAAATAAAAATTTCGAAAAAAAGTTTGTATGGGGCGTACCGTCTTTGGGGTGGACCATTTTGGGAATTAAAAAAAACTATATTTTTTATTTTTTGAGAGCTACCTATTCTGAAAATTTGGGCCGATTTGGAGATGGTGACCCCCTTTACCTCACGCCAAATAGCGCAGGCTGCGCCTGCGCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGATGGACCAAAAAGATAGT</pcr_primer_p1>
		<pcr_primer_p2>ATAACTCGATTTTGATCAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>ACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTAT</canonical_amplicon>
		<polymorphic_amplicon>ACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTRGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28168</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748788</contig_pos>
        <strand>+</strand>
        <context>TGTTTRGACC[A/T]TTTTGATTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACC</left_flank>
        <right_flank>TTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTACTCCCCAATAGCTCTACTACAAAAAAAGTTATGACCAAAATAAAAATTTCGAAAAAAAGTTTGTATGGGGCGTACCGTCTTTGGGGTGGACCATTTTGGGAATTAAAAAAAACTATATTTTTTATTTTTTGAGAGCTACCTATTCTGAAAATTTGGGCCGATTTGGAGATGGTGACCCCCTTTACCTCACGCCAAATAGCGCAGGCTGCGCCTGCGCCTGAGCC</canonical>
            <polymorphic>GGGCTTTCAGAAAAAAATAGTTTCGTAAGATTTGGTTTTTTAGATTTTTTGCAATCAAGCTTTAAAAATTACATACAAAAATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCWTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTACTCCCCAATAGCTCTACTACAAAAAAAGTTATGACCAAAATAAAAATTTCGAAAAAAAGTTTGTATGGGGCGTACCGTCTTTGGGGTGGACCATTTTGGGAATTAAAAAAAACTATATTTTTTATTTTTTGAGAGCTACCTATTCTGAAAATTTGGGCCGATTTGGAGATGGTGACCCCCTTTACCTCACGCCAAATAGCGCAGGCTGCGCCTGCGCCTGAGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGATGGACCAAAAAGATAGT</pcr_primer_p1>
		<pcr_primer_p2>ATAACTCGATTTTGATCAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>ACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTAT</canonical_amplicon>
		<polymorphic_amplicon>ACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCWTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28169</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748868</contig_pos>
        <strand>+</strand>
        <context>ACCTACTTTT[C/T]TGATTGCACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTT</left_flank>
        <right_flank>TGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTACTCCCCAATAGCTCTACTACAAAAAAAGTTATGACCAAAATAAAAATTTCGAAAAAAAGTTTGTATGGGGCGTACCGTCTTTGGGGTGGACCATTTTGGGAATTAAAAAAAACTATATTTTTTATTTTTTGAGAGCTACCTATTCTGAAAATTTGGGCCGATTTGGAGATGGTGACCCCCTTTACCTCACGCCAAATAGCGCAGGCTGCGCCTGCGCCTGAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCAAAGTTATCGATTTTTAAAAGATGTCATTTACGTCCTTTTAGGA</canonical>
            <polymorphic>ATTCAAAAAAATTCAAACGCGTCTAAGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTYTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTACTCCCCAATAGCTCTACTACAAAAAAAGTTATGACCAAAATAAAAATTTCGAAAAAAAGTTTGTATGGGGCGTACCGTCTTTGGGGTGGACCATTTTGGGAATTAAAAAAAACTATATTTTTTATTTTTTGAGAGCTACCTATTCTGAAAATTTGGGCCGATTTGGAGATGGTGACCCCCTTTACCTCACGCCAAATAGCGCAGGCTGCGCCTGCGCCTGAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCAAAGTTATCGATTTTTAAAAGATGTCATTTACGTCCTTTTAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>341 301 200 158</canonical_bands>
                <polymorphic_bands>642 200 158</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGATGGACCAAAAAGATAGT</pcr_primer_p1>
		<pcr_primer_p2>ATAACTCGATTTTGATCAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>ACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTAT</canonical_amplicon>
		<polymorphic_amplicon>ACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTYTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28170</snp_id>
        <super_contig>c003400682.Contig2</super_contig>
        <contig_pos>748893</contig_pos>
        <strand>+</strand>
        <context>TGTAGTACTC[A/G]ACGAGAGCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTC</left_flank>
        <right_flank>ACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTACTCCCCAATAGCTCTACTACAAAAAAAGTTATGACCAAAATAAAAATTTCGAAAAAAAGTTTGTATGGGGCGTACCGTCTTTGGGGTGGACCATTTTGGGAATTAAAAAAAACTATATTTTTTATTTTTTGAGAGCTACCTATTCTGAAAATTTGGGCCGATTTGGAGATGGTGACCCCCTTTACCTCACGCCAAATAGCGCAGGCTGCGCCTGCGCCTGAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCAAAGTTATCGATTTTTAAAAGATGTCATTTACGTCCTTTTAGGAGAAAATACGAAAGATTTTGTAAAGT</canonical>
            <polymorphic>AGTCGCCCCAGCTTTACCGTATCAAAAAATCAAGTACTAACAAAATGTGCAAAATCAAACGTTCTACAACTTTTATTATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTTGTACTATCAGAATTTTGAGAAATTCACATATTCTACTAAAAAAATTAAGGGCTTCCAAATAAATATAGTCTCTACCACTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAACTTTTTTTTCGAACGCGCCTAAGTCGCCCCAGCCACGATGGACCAAAAAGATAGTACTACCAAAAGATGTAAAAAACCAAACTGTACAATATTACTGTTTAGACCTTTTTGATTGCGGCCACCGTTCCCGAGTTATGGCCCAAAAACAAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCRACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTACTCCCCAATAGCTCTACTACAAAAAAAGTTATGACCAAAATAAAAATTTCGAAAAAAAGTTTGTATGGGGCGTACCGTCTTTGGGGTGGACCATTTTGGGAATTAAAAAAAACTATATTTTTTATTTTTTGAGAGCTACCTATTCTGAAAATTTGGGCCGATTTGGAGATGGTGACCCCCTTTACCTCACGCCAAATAGCGCAGGCTGCGCCTGCGCCTGAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCTAAGCCAAAGTTATCGATTTTTAAAAGATGTCATTTACGTCCTTTTAGGAGAAAATACGAAAGATTTTGTAAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>299 219 200 168 60 54</canonical_bands>
                <polymorphic_bands>299 254 219 168 60</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>497 398 105</canonical_bands>
                <polymorphic_bands>895 105</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTTGACCTACCGAAAATG</pcr_primer_p1>
		<pcr_primer_p2>TAGAGCTATTGGGGAGTACTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCGACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTACTCCCCAATAGCTCTA</canonical_amplicon>
		<polymorphic_amplicon>AAATTTGACCTACCGAAAATGGATGTTGACCTACTTTTCTGATTGCACCATGTTGTAGTACTCRACGAGAGCTTTCATATGCACTATTCAAAATATAGTCGTGTCCTGATCAAAATCGAGTTATGACCGTTAAAAAAAAAAAATTTTCAGTTTTGATCTACCAGAAAAATTTTGGTAGATCAAAAAAAATGTCAGCGTACTGCCCATCCAATATGGACCCTAATGCAAAAAAGTACTCCCCAATAGCTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28171</snp_id>
        <super_contig>c003400858.Contig1</super_contig>
        <contig_pos>8198</contig_pos>
        <strand></strand>
        <context>acagtttatc[A/C]gttgacagat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATTTGTTCACTAGTAAAACATTTATCATAAAATAAACAACAGTTTATC</left_flank>
        <right_flank>GTTGACAGATTTTTGATATCTCTTACAGGAAGCGAGATAATTAAGTTCAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCCATTATCATGTAATATTATTGCTTGATTCCTTCCCGAGTGTGTGTGAGTTGCCACACTCGGTTGTATGTGTCTGTATCCTTTATACGACCTTATTATTACCACGTTAAACCTAAATTTGATAAACATGTGACATAAAATTCCTTTTTCGTAGTGATGAAACAGAAAAACATATTCTCTTGTAACGTAGAGGAAAGAGAACCAATTTTCATTGAACTGATAAGAAACCATTTCGAATCCTCAATGAGCAATTAAAATGGCTCATTCATTTGTAATGATTTCCGTCGAAAACTCTCTACACACAGAGTATGTCCAATCAGATCGTAATGTGACACGTGACACGTTTTAGGATAAGGTGCATTCGACCTTGTTCATCTCTTCATCGCACGACAGTACTCCACAATCTGCTTTGAGCTTAATTATCTCGGTCCCTATAAAAGGTATCAAAAATTTGTTCACTAGTAAAACATTTATCATAAAATAAACAACAGTTTATCAGTTGACAGATTTTTGATATCTCTTACAGGAAGCGAGATAATTAAGTTCAAAAGTATATGACCAGGTTGAGCCAGGCGGTCGCACCGGCCGATGGCTTTGAGTTCAATTATCTCGGTTTTTGCAAAAGATATAAAACATTTATCAATTAATTGGTGATAAAATGACAAACATTTTATCAGTTGGCAAATTTTTGATATCTCTTACAGGAACCTAGATAATTGAGCTCAAAAATAGGATGGCAAACGCATTTATGATTATCACGCATGCACTGCGATTATGGCCCATAAAACGTGCTCCCCGCGTACGCTGTATTCTTTATGATCTTCCTTTCCGTACAGTCCTTTTGGACTCTGCATCATAAAAATCGAAGGCTCCGCCCTCCCGACGGACTGGCGCGCTCTTCCTCATCTCAAAATTCATCAGACCATTTTTGACAATTTATGAGTATTCGGTTGACAAGGCGAAATGAGGTGAGTGGTCGATTTGATATGCTACTTTTT</canonical>
            <polymorphic>ATTCCATTATCATGTAATATTATTGCTTGATTCCTTCCCGAGTGTGTGTGAGTTGCCACACTCGGTTGTATGTGTCTGTATCCTTTATACGACCTTATTATTACCACGTTAAACCTAAATTTGATAAACATGTGACATAAAATTCCTTTTTCGTAGTGATGAAACAGAAAAACATATTCTCTTGTAACGTAGAGGAAAGAGAACCAATTTTCATTGAACTGATAAGAAACCATTTCGAATCCTCAATGAGCAATTAAAATGGCTCATTCATTTGTAATGATTTCCGTCGAAAACTCTCTACACACAGAGTATGTCCAATCAGATCGTAATGTGACACGTGACACGTTTTAGGATAAGGTGCATTCGACCTTGTTCATCTCTTCATCGCACGACAGTACTCCACAATCTGCTTTGAGCTTAATTATCTCGGTCCCTATAAAAGGTATCAAAAATTTGTTCACTAGTAAAACATTTATCATAAAATAAACAACAGTTTATCMGTTGACAGATTTTTGATATCTCTTACAGGAAGCGAGATAATTAAGTTCAAAAGTATATGACCAGGTTGAGCCAGGCGGTCGCACCGGCCGATGGCTTTGAGTTCAATTATCTCGGTTTTTGCAAAAGATATAAAACATTTATCAATTAATTGGTGATAAAATGACAAACATTTTATCAGTTGGCAAATTTTTGATATCTCTTACAGGAACCTAGATAATTGAGCTCAAAAATAGGATGGCAAACGCATTTATGATTATCACGCATGCACTGCGATTATGGCCCATAAAACGTGCTCCCCGCGTACGCTGTATTCTTTATGATCTTCCTTTCCGTACAGTCCTTTTGGACTCTGCATCATAAAAATCGAAGGCTCCGCCCTCCCGACGGACTGGCGCGCTCTTCCTCATCTCAAAATTCATCAGACCATTTTTGACAATTTATGAGTATTCGGTTGACAAGGCGAAATGAGGTGAGTGGTCGATTTGATATGCTACTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGACACGTTTTAGGATAAGGT</pcr_primer_p1>
		<pcr_primer_p2>GGCTCAACCTGGTCATATACT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>GTGACACGTTTTAGGATAAGGTGCATTCGACCTTGTTCATCTCTTCATCGCACGACAGTACTCCACAATCTGCTTTGAGCTTAATTATCTCGGTCCCTATAAAAGGTATCAAAAATTTGTTCACTAGTAAAACATTTATCATAAAATAAACAACAGTTTATCAGTTGACAGATTTTTGATATCTCTTACAGGAAGCGAGATAATTAAGTTCAAAAGTATATGACCAGGTTGAGCC</canonical_amplicon>
		<polymorphic_amplicon>GTGACACGTTTTAGGATAAGGTGCATTCGACCTTGTTCATCTCTTCATCGCACGACAGTACTCCACAATCTGCTTTGAGCTTAATTATCTCGGTCCCTATAAAAGGTATCAAAAATTTGTTCACTAGTAAAACATTTATCATAAAATAAACAACAGTTTATCMGTTGACAGATTTTTGATATCTCTTACAGGAAGCGAGATAATTAAGTTCAAAAGTATATGACCAGGTTGAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28172</snp_id>
        <super_contig>c003400858.Contig1</super_contig>
        <contig_pos>8316</contig_pos>
        <strand></strand>
        <context>tatctcggtt[T/C]ttgcaaaaga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAGCCAGGCGGTCGCACCGGCCGATGGCTTTGAGTTCAATTATCTCGGTT</left_flank>
        <right_flank>TTGCAAAAGATATAAAACATTTATCAATTAATTGGTGATAAAATGACAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGATAAACATGTGACATAAAATTCCTTTTTCGTAGTGATGAAACAGAAAAACATATTCTCTTGTAACGTAGAGGAAAGAGAACCAATTTTCATTGAACTGATAAGAAACCATTTCGAATCCTCAATGAGCAATTAAAATGGCTCATTCATTTGTAATGATTTCCGTCGAAAACTCTCTACACACAGAGTATGTCCAATCAGATCGTAATGTGACACGTGACACGTTTTAGGATAAGGTGCATTCGACCTTGTTCATCTCTTCATCGCACGACAGTACTCCACAATCTGCTTTGAGCTTAATTATCTCGGTCCCTATAAAAGGTATCAAAAATTTGTTCACTAGTAAAACATTTATCATAAAATAAACAACAGTTTATCAGTTGACAGATTTTTGATATCTCTTACAGGAAGCGAGATAATTAAGTTCAAAAGTATATGACCAGGTTGAGCCAGGCGGTCGCACCGGCCGATGGCTTTGAGTTCAATTATCTCGGTTTTTGCAAAAGATATAAAACATTTATCAATTAATTGGTGATAAAATGACAAACATTTTATCAGTTGGCAAATTTTTGATATCTCTTACAGGAACCTAGATAATTGAGCTCAAAAATAGGATGGCAAACGCATTTATGATTATCACGCATGCACTGCGATTATGGCCCATAAAACGTGCTCCCCGCGTACGCTGTATTCTTTATGATCTTCCTTTCCGTACAGTCCTTTTGGACTCTGCATCATAAAAATCGAAGGCTCCGCCCTCCCGACGGACTGGCGCGCTCTTCCTCATCTCAAAATTCATCAGACCATTTTTGACAATTTATGAGTATTCGGTTGACAAGGCGAAATGAGGTGAGTGGTCGATTTGATATGCTACTTTTTTCAAATTTCAACATCAGTAAGGATTTCGATTGGCCCGTTGGATACAATGATGCGAAGGAGCGTCTTGGAGAGAGGTGGGTATTAAAAGGACTCACTGATAGTGATTAAAAAAATAATC</canonical>
            <polymorphic>ATTTGATAAACATGTGACATAAAATTCCTTTTTCGTAGTGATGAAACAGAAAAACATATTCTCTTGTAACGTAGAGGAAAGAGAACCAATTTTCATTGAACTGATAAGAAACCATTTCGAATCCTCAATGAGCAATTAAAATGGCTCATTCATTTGTAATGATTTCCGTCGAAAACTCTCTACACACAGAGTATGTCCAATCAGATCGTAATGTGACACGTGACACGTTTTAGGATAAGGTGCATTCGACCTTGTTCATCTCTTCATCGCACGACAGTACTCCACAATCTGCTTTGAGCTTAATTATCTCGGTCCCTATAAAAGGTATCAAAAATTTGTTCACTAGTAAAACATTTATCATAAAATAAACAACAGTTTATCAGTTGACAGATTTTTGATATCTCTTACAGGAAGCGAGATAATTAAGTTCAAAAGTATATGACCAGGTTGAGCCAGGCGGTCGCACCGGCCGATGGCTTTGAGTTCAATTATCTCGGTTYTTGCAAAAGATATAAAACATTTATCAATTAATTGGTGATAAAATGACAAACATTTTATCAGTTGGCAAATTTTTGATATCTCTTACAGGAACCTAGATAATTGAGCTCAAAAATAGGATGGCAAACGCATTTATGATTATCACGCATGCACTGCGATTATGGCCCATAAAACGTGCTCCCCGCGTACGCTGTATTCTTTATGATCTTCCTTTCCGTACAGTCCTTTTGGACTCTGCATCATAAAAATCGAAGGCTCCGCCCTCCCGACGGACTGGCGCGCTCTTCCTCATCTCAAAATTCATCAGACCATTTTTGACAATTTATGAGTATTCGGTTGACAAGGCGAAATGAGGTGAGTGGTCGATTTGATATGCTACTTTTTTCAAATTTCAACATCAGTAAGGATTTCGATTGGCCCGTTGGATACAATGATGCGAAGGAGCGTCTTGGAGAGAGGTGGGTATTAAAAGGACTCACTGATAGTGATTAAAAAAATAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGACCTTGTTCATCTCTTC</pcr_primer_p1>
		<pcr_primer_p2>AAGGAAGATCATAAAGAATACAGC</pcr_primer_p2>
		<pcr_amplicon_size>466</pcr_amplicon_size>
		<canonical_amplicon>TCGACCTTGTTCATCTCTTCATCGCACGACAGTACTCCACAATCTGCTTTGAGCTTAATTATCTCGGTCCCTATAAAAGGTATCAAAAATTTGTTCACTAGTAAAACATTTATCATAAAATAAACAACAGTTTATCAGTTGACAGATTTTTGATATCTCTTACAGGAAGCGAGATAATTAAGTTCAAAAGTATATGACCAGGTTGAGCCAGGCGGTCGCACCGGCCGATGGCTTTGAGTTCAATTATCTCGGTTTTTGCAAAAGATATAAAACATTTATCAATTAATTGGTGATAAAATGACAAACATTTTATCAGTTGGCAAATTTTTGATATCTCTTACAGGAACCTAGATAATTGAGCTCAAAAATAGGATGGCAAACGCATTTATGATTATCACGCATGCACTGCGATTATGGCCCATAAAACGTGCTCCCCGCGTACGCTGTATTCTTTATGATCTTCCTT</canonical_amplicon>
		<polymorphic_amplicon>TCGACCTTGTTCATCTCTTCATCGCACGACAGTACTCCACAATCTGCTTTGAGCTTAATTATCTCGGTCCCTATAAAAGGTATCAAAAATTTGTTCACTAGTAAAACATTTATCATAAAATAAACAACAGTTTATCAGTTGACAGATTTTTGATATCTCTTACAGGAAGCGAGATAATTAAGTTCAAAAGTATATGACCAGGTTGAGCCAGGCGGTCGCACCGGCCGATGGCTTTGAGTTCAATTATCTCGGTTYTTGCAAAAGATATAAAACATTTATCAATTAATTGGTGATAAAATGACAAACATTTTATCAGTTGGCAAATTTTTGATATCTCTTACAGGAACCTAGATAATTGAGCTCAAAAATAGGATGGCAAACGCATTTATGATTATCACGCATGCACTGCGATTATGGCCCATAAAACGTGCTCCCCGCGTACGCTGTATTCTTTATGATCTTCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28173</snp_id>
        <super_contig>c003400858.Contig1</super_contig>
        <contig_pos>8401</contig_pos>
        <strand></strand>
        <context>gatatctctt[A/T]caggaaccta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGATAAAATGACAAACATTTTATCAGTTGGCAAATTTTTGATATCTCTT</left_flank>
        <right_flank>CAGGAACCTAGATAATTGAGCTCAAAAATAGGATGGCAAACGCATTTATG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAATTTTCATTGAACTGATAAGAAACCATTTCGAATCCTCAATGAGCAATTAAAATGGCTCATTCATTTGTAATGATTTCCGTCGAAAACTCTCTACACACAGAGTATGTCCAATCAGATCGTAATGTGACACGTGACACGTTTTAGGATAAGGTGCATTCGACCTTGTTCATCTCTTCATCGCACGACAGTACTCCACAATCTGCTTTGAGCTTAATTATCTCGGTCCCTATAAAAGGTATCAAAAATTTGTTCACTAGTAAAACATTTATCATAAAATAAACAACAGTTTATCAGTTGACAGATTTTTGATATCTCTTACAGGAAGCGAGATAATTAAGTTCAAAAGTATATGACCAGGTTGAGCCAGGCGGTCGCACCGGCCGATGGCTTTGAGTTCAATTATCTCGGTTTTTGCAAAAGATATAAAACATTTATCAATTAATTGGTGATAAAATGACAAACATTTTATCAGTTGGCAAATTTTTGATATCTCTTACAGGAACCTAGATAATTGAGCTCAAAAATAGGATGGCAAACGCATTTATGATTATCACGCATGCACTGCGATTATGGCCCATAAAACGTGCTCCCCGCGTACGCTGTATTCTTTATGATCTTCCTTTCCGTACAGTCCTTTTGGACTCTGCATCATAAAAATCGAAGGCTCCGCCCTCCCGACGGACTGGCGCGCTCTTCCTCATCTCAAAATTCATCAGACCATTTTTGACAATTTATGAGTATTCGGTTGACAAGGCGAAATGAGGTGAGTGGTCGATTTGATATGCTACTTTTTTCAAATTTCAACATCAGTAAGGATTTCGATTGGCCCGTTGGATACAATGATGCGAAGGAGCGTCTTGGAGAGAGGTGGGTATTAAAAGGACTCACTGATAGTGATTAAAAAAATAATCAAAATTTTAATTGAAACCGTTTCAAAGTTGGAACGGATGATTGGTGGCTCAACGGCGGCCGAGTTTTAGAAAGCTAACCAAACAG</canonical>
            <polymorphic>CCAATTTTCATTGAACTGATAAGAAACCATTTCGAATCCTCAATGAGCAATTAAAATGGCTCATTCATTTGTAATGATTTCCGTCGAAAACTCTCTACACACAGAGTATGTCCAATCAGATCGTAATGTGACACGTGACACGTTTTAGGATAAGGTGCATTCGACCTTGTTCATCTCTTCATCGCACGACAGTACTCCACAATCTGCTTTGAGCTTAATTATCTCGGTCCCTATAAAAGGTATCAAAAATTTGTTCACTAGTAAAACATTTATCATAAAATAAACAACAGTTTATCAGTTGACAGATTTTTGATATCTCTTACAGGAAGCGAGATAATTAAGTTCAAAAGTATATGACCAGGTTGAGCCAGGCGGTCGCACCGGCCGATGGCTTTGAGTTCAATTATCTCGGTTTTTGCAAAAGATATAAAACATTTATCAATTAATTGGTGATAAAATGACAAACATTTTATCAGTTGGCAAATTTTTGATATCTCTTWCAGGAACCTAGATAATTGAGCTCAAAAATAGGATGGCAAACGCATTTATGATTATCACGCATGCACTGCGATTATGGCCCATAAAACGTGCTCCCCGCGTACGCTGTATTCTTTATGATCTTCCTTTCCGTACAGTCCTTTTGGACTCTGCATCATAAAAATCGAAGGCTCCGCCCTCCCGACGGACTGGCGCGCTCTTCCTCATCTCAAAATTCATCAGACCATTTTTGACAATTTATGAGTATTCGGTTGACAAGGCGAAATGAGGTGAGTGGTCGATTTGATATGCTACTTTTTTCAAATTTCAACATCAGTAAGGATTTCGATTGGCCCGTTGGATACAATGATGCGAAGGAGCGTCTTGGAGAGAGGTGGGTATTAAAAGGACTCACTGATAGTGATTAAAAAAATAATCAAAATTTTAATTGAAACCGTTTCAAAGTTGGAACGGATGATTGGTGGCTCAACGGCGGCCGAGTTTTAGAAAGCTAACCAAACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGACCTTGTTCATCTCTTC</pcr_primer_p1>
		<pcr_primer_p2>AAGGAAGATCATAAAGAATACAGC</pcr_primer_p2>
		<pcr_amplicon_size>466</pcr_amplicon_size>
		<canonical_amplicon>TCGACCTTGTTCATCTCTTCATCGCACGACAGTACTCCACAATCTGCTTTGAGCTTAATTATCTCGGTCCCTATAAAAGGTATCAAAAATTTGTTCACTAGTAAAACATTTATCATAAAATAAACAACAGTTTATCAGTTGACAGATTTTTGATATCTCTTACAGGAAGCGAGATAATTAAGTTCAAAAGTATATGACCAGGTTGAGCCAGGCGGTCGCACCGGCCGATGGCTTTGAGTTCAATTATCTCGGTTTTTGCAAAAGATATAAAACATTTATCAATTAATTGGTGATAAAATGACAAACATTTTATCAGTTGGCAAATTTTTGATATCTCTTACAGGAACCTAGATAATTGAGCTCAAAAATAGGATGGCAAACGCATTTATGATTATCACGCATGCACTGCGATTATGGCCCATAAAACGTGCTCCCCGCGTACGCTGTATTCTTTATGATCTTCCTT</canonical_amplicon>
		<polymorphic_amplicon>TCGACCTTGTTCATCTCTTCATCGCACGACAGTACTCCACAATCTGCTTTGAGCTTAATTATCTCGGTCCCTATAAAAGGTATCAAAAATTTGTTCACTAGTAAAACATTTATCATAAAATAAACAACAGTTTATCAGTTGACAGATTTTTGATATCTCTTACAGGAAGCGAGATAATTAAGTTCAAAAGTATATGACCAGGTTGAGCCAGGCGGTCGCACCGGCCGATGGCTTTGAGTTCAATTATCTCGGTTTTTGCAAAAGATATAAAACATTTATCAATTAATTGGTGATAAAATGACAAACATTTTATCAGTTGGCAAATTTTTGATATCTCTTWCAGGAACCTAGATAATTGAGCTCAAAAATAGGATGGCAAACGCATTTATGATTATCACGCATGCACTGCGATTATGGCCCATAAAACGTGCTCCCCGCGTACGCTGTATTCTTTATGATCTTCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28174</snp_id>
        <super_contig>c003400858.Contig1</super_contig>
        <contig_pos>8459</contig_pos>
        <strand></strand>
        <context>ATGATTATCA[C/A]GCATGCACTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CTAGATAATTGAGCTCAAAAATAGGATGGCAAACGCATTTATGATTATCA</left_flank>
        <right_flank>GCATGCACTGCGATTATGGCCCATAAAACGTGCTCCCCGCGTACGCTGTA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTCATTCATTTGTAATGATTTCCGTCGAAAACTCTCTACACACAGAGTATGTCCAATCAGATCGTAATGTGACACGTGACACGTTTTAGGATAAGGTGCATTCGACCTTGTTCATCTCTTCATCGCACGACAGTACTCCACAATCTGCTTTGAGCTTAATTATCTCGGTCCCTATAAAAGGTATCAAAAATTTGTTCACTAGTAAAACATTTATCATAAAATAAACAACAGTTTATCAGTTGACAGATTTTTGATATCTCTTACAGGAAGCGAGATAATTAAGTTCAAAAGTATATGACCAGGTTGAGCCAGGCGGTCGCACCGGCCGATGGCTTTGAGTTCAATTATCTCGGTTTTTGCAAAAGATATAAAACATTTATCAATTAATTGGTGATAAAATGACAAACATTTTATCAGTTGGCAAATTTTTGATATCTCTTACAGGAACCTAGATAATTGAGCTCAAAAATAGGATGGCAAACGCATTTATGATTATCACGCATGCACTGCGATTATGGCCCATAAAACGTGCTCCCCGCGTACGCTGTATTCTTTATGATCTTCCTTTCCGTACAGTCCTTTTGGACTCTGCATCATAAAAATCGAAGGCTCCGCCCTCCCGACGGACTGGCGCGCTCTTCCTCATCTCAAAATTCATCAGACCATTTTTGACAATTTATGAGTATTCGGTTGACAAGGCGAAATGAGGTGAGTGGTCGATTTGATATGCTACTTTTTTCAAATTTCAACATCAGTAAGGATTTCGATTGGCCCGTTGGATACAATGATGCGAAGGAGCGTCTTGGAGAGAGGTGGGTATTAAAAGGACTCACTGATAGTGATTAAAAAAATAATCAAAATTTTAATTGAAACCGTTTCAAAGTTGGAACGGATGATTGGTGGCTCAACGGCGGCCGAGTTTTAGAAAGCTAACCAAACAGATTACTGCACCCCTTTCCTAAAAAGAGATCTGCGTTCGGGGGGAATCGAACCCCCGTC</canonical>
            <polymorphic>GCTCATTCATTTGTAATGATTTCCGTCGAAAACTCTCTACACACAGAGTATGTCCAATCAGATCGTAATGTGACACGTGACACGTTTTAGGATAAGGTGCATTCGACCTTGTTCATCTCTTCATCGCACGACAGTACTCCACAATCTGCTTTGAGCTTAATTATCTCGGTCCCTATAAAAGGTATCAAAAATTTGTTCACTAGTAAAACATTTATCATAAAATAAACAACAGTTTATCAGTTGACAGATTTTTGATATCTCTTACAGGAAGCGAGATAATTAAGTTCAAAAGTATATGACCAGGTTGAGCCAGGCGGTCGCACCGGCCGATGGCTTTGAGTTCAATTATCTCGGTTTTTGCAAAAGATATAAAACATTTATCAATTAATTGGTGATAAAATGACAAACATTTTATCAGTTGGCAAATTTTTGATATCTCTTACAGGAACCTAGATAATTGAGCTCAAAAATAGGATGGCAAACGCATTTATGATTATCAMGCATGCACTGCGATTATGGCCCATAAAACGTGCTCCCCGCGTACGCTGTATTCTTTATGATCTTCCTTTCCGTACAGTCCTTTTGGACTCTGCATCATAAAAATCGAAGGCTCCGCCCTCCCGACGGACTGGCGCGCTCTTCCTCATCTCAAAATTCATCAGACCATTTTTGACAATTTATGAGTATTCGGTTGACAAGGCGAAATGAGGTGAGTGGTCGATTTGATATGCTACTTTTTTCAAATTTCAACATCAGTAAGGATTTCGATTGGCCCGTTGGATACAATGATGCGAAGGAGCGTCTTGGAGAGAGGTGGGTATTAAAAGGACTCACTGATAGTGATTAAAAAAATAATCAAAATTTTAATTGAAACCGTTTCAAAGTTGGAACGGATGATTGGTGGCTCAACGGCGGCCGAGTTTTAGAAAGCTAACCAAACAGATTACTGCACCCCTTTCCTAAAAAGAGATCTGCGTTCGGGGGGAATCGAACCCCCGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>180 123 105 100 72 61 58 49 48 41 29 29 25 17 17 13 9 8 4 4 3 3 2</canonical_bands>
                <polymorphic_bands>180 123 113 100 72 61 58 49 48 41 29 29 25 17 17 13 9 4 4 3 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGACCTTGTTCATCTCTTC</pcr_primer_p1>
		<pcr_primer_p2>AAGGAAGATCATAAAGAATACAGC</pcr_primer_p2>
		<pcr_amplicon_size>466</pcr_amplicon_size>
		<canonical_amplicon>TCGACCTTGTTCATCTCTTCATCGCACGACAGTACTCCACAATCTGCTTTGAGCTTAATTATCTCGGTCCCTATAAAAGGTATCAAAAATTTGTTCACTAGTAAAACATTTATCATAAAATAAACAACAGTTTATCAGTTGACAGATTTTTGATATCTCTTACAGGAAGCGAGATAATTAAGTTCAAAAGTATATGACCAGGTTGAGCCAGGCGGTCGCACCGGCCGATGGCTTTGAGTTCAATTATCTCGGTTTTTGCAAAAGATATAAAACATTTATCAATTAATTGGTGATAAAATGACAAACATTTTATCAGTTGGCAAATTTTTGATATCTCTTACAGGAACCTAGATAATTGAGCTCAAAAATAGGATGGCAAACGCATTTATGATTATCACGCATGCACTGCGATTATGGCCCATAAAACGTGCTCCCCGCGTACGCTGTATTCTTTATGATCTTCCTT</canonical_amplicon>
		<polymorphic_amplicon>TCGACCTTGTTCATCTCTTCATCGCACGACAGTACTCCACAATCTGCTTTGAGCTTAATTATCTCGGTCCCTATAAAAGGTATCAAAAATTTGTTCACTAGTAAAACATTTATCATAAAATAAACAACAGTTTATCAGTTGACAGATTTTTGATATCTCTTACAGGAAGCGAGATAATTAAGTTCAAAAGTATATGACCAGGTTGAGCCAGGCGGTCGCACCGGCCGATGGCTTTGAGTTCAATTATCTCGGTTTTTGCAAAAGATATAAAACATTTATCAATTAATTGGTGATAAAATGACAAACATTTTATCAGTTGGCAAATTTTTGATATCTCTTACAGGAACCTAGATAATTGAGCTCAAAAATAGGATGGCAAACGCATTTATGATTATCAMGCATGCACTGCGATTATGGCCCATAAAACGTGCTCCCCGCGTACGCTGTATTCTTTATGATCTTCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28175</snp_id>
        <super_contig>c003400858.Contig1</super_contig>
        <contig_pos>8539</contig_pos>
        <strand></strand>
        <context>CCGTACAGTC[C/T]TYTTGGACTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGCTCCCCGCGTACGCTGTATTCTTTATGATCTTCCTTTCCGTACAGTC</left_flank>
        <right_flank>TTTTGGACTCTGCATCATAAAAATCGAAGGCTCCGCCCTCCCGACGGACT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACGTTTTAGGATAAGGTGCATTCGACCTTGTTCATCTCTTCATCGCACGACAGTACTCCACAATCTGCTTTGAGCTTAATTATCTCGGTCCCTATAAAAGGTATCAAAAATTTGTTCACTAGTAAAACATTTATCATAAAATAAACAACAGTTTATCAGTTGACAGATTTTTGATATCTCTTACAGGAAGCGAGATAATTAAGTTCAAAAGTATATGACCAGGTTGAGCCAGGCGGTCGCACCGGCCGATGGCTTTGAGTTCAATTATCTCGGTTTTTGCAAAAGATATAAAACATTTATCAATTAATTGGTGATAAAATGACAAACATTTTATCAGTTGGCAAATTTTTGATATCTCTTACAGGAACCTAGATAATTGAGCTCAAAAATAGGATGGCAAACGCATTTATGATTATCACGCATGCACTGCGATTATGGCCCATAAAACGTGCTCCCCGCGTACGCTGTATTCTTTATGATCTTCCTTTCCGTACAGTCCTTTTGGACTCTGCATCATAAAAATCGAAGGCTCCGCCCTCCCGACGGACTGGCGCGCTCTTCCTCATCTCAAAATTCATCAGACCATTTTTGACAATTTATGAGTATTCGGTTGACAAGGCGAAATGAGGTGAGTGGTCGATTTGATATGCTACTTTTTTCAAATTTCAACATCAGTAAGGATTTCGATTGGCCCGTTGGATACAATGATGCGAAGGAGCGTCTTGGAGAGAGGTGGGTATTAAAAGGACTCACTGATAGTGATTAAAAAAATAATCAAAATTTTAATTGAAACCGTTTCAAAGTTGGAACGGATGATTGGTGGCTCAACGGCGGCCGAGTTTTAGAAAGCTAACCAAACAGATTACTGCACCCCTTTCCTAAAAAGAGATCTGCGTTCGGGGGGAATCGAACCCCCGTCGAATGCTTGGAAGGCATCCATGCTGACCATTACACCACGAACGCACACTTCAAGATTCTTTGCCTTGTCGTATATAAATT</canonical>
            <polymorphic>CACGTTTTAGGATAAGGTGCATTCGACCTTGTTCATCTCTTCATCGCACGACAGTACTCCACAATCTGCTTTGAGCTTAATTATCTCGGTCCCTATAAAAGGTATCAAAAATTTGTTCACTAGTAAAACATTTATCATAAAATAAACAACAGTTTATCAGTTGACAGATTTTTGATATCTCTTACAGGAAGCGAGATAATTAAGTTCAAAAGTATATGACCAGGTTGAGCCAGGCGGTCGCACCGGCCGATGGCTTTGAGTTCAATTATCTCGGTTTTTGCAAAAGATATAAAACATTTATCAATTAATTGGTGATAAAATGACAAACATTTTATCAGTTGGCAAATTTTTGATATCTCTTACAGGAACCTAGATAATTGAGCTCAAAAATAGGATGGCAAACGCATTTATGATTATCACGCATGCACTGCGATTATGGCCCATAAAACGTGCTCCCCGCGTACGCTGTATTCTTTATGATCTTCCTTTCCGTACAGTCYTTTTGGACTCTGCATCATAAAAATCGAAGGCTCCGCCCTCCCGACGGACTGGCGCGCTCTTCCTCATCTCAAAATTCATCAGACCATTTTTGACAATTTATGAGTATTCGGTTGACAAGGCGAAATGAGGTGAGTGGTCGATTTGATATGCTACTTTTTTCAAATTTCAACATCAGTAAGGATTTCGATTGGCCCGTTGGATACAATGATGCGAAGGAGCGTCTTGGAGAGAGGTGGGTATTAAAAGGACTCACTGATAGTGATTAAAAAAATAATCAAAATTTTAATTGAAACCGTTTCAAAGTTGGAACGGATGATTGGTGGCTCAACGGCGGCCGAGTTTTAGAAAGCTAACCAAACAGATTACTGCACCCCTTTCCTAAAAAGAGATCTGCGTTCGGGGGGAATCGAACCCCCGTCGAATGCTTGGAAGGCATCCATGCTGACCATTACACCACGAACGCACACTTCAAGATTCTTTGCCTTGTCGTATATAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCAAACGCATTTATGATTA</pcr_primer_p1>
		<pcr_primer_p2>CATATCAAATCGACCACTCAC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GGCAAACGCATTTATGATTATCACGCATGCACTGCGATTATGGCCCATAAAACGTGCTCCCCGCGTACGCTGTATTCTTTATGATCTTCCTTTCCGTACAGTCCTTTTGGACTCTGCATCATAAAAATCGAAGGCTCCGCCCTCCCGACGGACTGGCGCGCTCTTCCTCATCTCAAAATTCATCAGACCATTTTTGACAATTTATGAGTATTCGGTTGACAAGGCGAAATGAGGTGAGTGGTCGATTTGATATG</canonical_amplicon>
		<polymorphic_amplicon>GGCAAACGCATTTATGATTATCACGCATGCACTGCGATTATGGCCCATAAAACGTGCTCCCCGCGTACGCTGTATTCTTTATGATCTTCCTTTCCGTACAGTCYTTTTGGACTCTGCATCATAAAAATCGAAGGCTCCGCCCTCCCGACGGACTGGCGCGCTCTTCCTCATCTCAAAATTCATCAGACCATTTTTGACAATTTATGAGTATTCGGTTGACAAGGCGAAATGAGGTGAGTGGTCGATTTGATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28176</snp_id>
        <super_contig>c003400858.Contig1</super_contig>
        <contig_pos>8541</contig_pos>
        <strand></strand>
        <context>GTACAGTCYT[T/C]TTGGACTCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCTCCCCGCGTACGCTGTATTCTTTATGATCTTCCTTTCCGTACAGTCCT</left_flank>
        <right_flank>TTGGACTCTGCATCATAAAAATCGAAGGCTCCGCCCTCCCGACGGACTGG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTTTTAGGATAAGGTGCATTCGACCTTGTTCATCTCTTCATCGCACGACAGTACTCCACAATCTGCTTTGAGCTTAATTATCTCGGTCCCTATAAAAGGTATCAAAAATTTGTTCACTAGTAAAACATTTATCATAAAATAAACAACAGTTTATCAGTTGACAGATTTTTGATATCTCTTACAGGAAGCGAGATAATTAAGTTCAAAAGTATATGACCAGGTTGAGCCAGGCGGTCGCACCGGCCGATGGCTTTGAGTTCAATTATCTCGGTTTTTGCAAAAGATATAAAACATTTATCAATTAATTGGTGATAAAATGACAAACATTTTATCAGTTGGCAAATTTTTGATATCTCTTACAGGAACCTAGATAATTGAGCTCAAAAATAGGATGGCAAACGCATTTATGATTATCACGCATGCACTGCGATTATGGCCCATAAAACGTGCTCCCCGCGTACGCTGTATTCTTTATGATCTTCCTTTCCGTACAGTCCTTTTGGACTCTGCATCATAAAAATCGAAGGCTCCGCCCTCCCGACGGACTGGCGCGCTCTTCCTCATCTCAAAATTCATCAGACCATTTTTGACAATTTATGAGTATTCGGTTGACAAGGCGAAATGAGGTGAGTGGTCGATTTGATATGCTACTTTTTTCAAATTTCAACATCAGTAAGGATTTCGATTGGCCCGTTGGATACAATGATGCGAAGGAGCGTCTTGGAGAGAGGTGGGTATTAAAAGGACTCACTGATAGTGATTAAAAAAATAATCAAAATTTTAATTGAAACCGTTTCAAAGTTGGAACGGATGATTGGTGGCTCAACGGCGGCCGAGTTTTAGAAAGCTAACCAAACAGATTACTGCACCCCTTTCCTAAAAAGAGATCTGCGTTCGGGGGGAATCGAACCCCCGTCGAATGCTTGGAAGGCATCCATGCTGACCATTACACCACGAACGCACACTTCAAGATTCTTTGCCTTGTCGTATATAAATTAG</canonical>
            <polymorphic>CGTTTTAGGATAAGGTGCATTCGACCTTGTTCATCTCTTCATCGCACGACAGTACTCCACAATCTGCTTTGAGCTTAATTATCTCGGTCCCTATAAAAGGTATCAAAAATTTGTTCACTAGTAAAACATTTATCATAAAATAAACAACAGTTTATCAGTTGACAGATTTTTGATATCTCTTACAGGAAGCGAGATAATTAAGTTCAAAAGTATATGACCAGGTTGAGCCAGGCGGTCGCACCGGCCGATGGCTTTGAGTTCAATTATCTCGGTTTTTGCAAAAGATATAAAACATTTATCAATTAATTGGTGATAAAATGACAAACATTTTATCAGTTGGCAAATTTTTGATATCTCTTACAGGAACCTAGATAATTGAGCTCAAAAATAGGATGGCAAACGCATTTATGATTATCACGCATGCACTGCGATTATGGCCCATAAAACGTGCTCCCCGCGTACGCTGTATTCTTTATGATCTTCCTTTCCGTACAGTCCTYTTGGACTCTGCATCATAAAAATCGAAGGCTCCGCCCTCCCGACGGACTGGCGCGCTCTTCCTCATCTCAAAATTCATCAGACCATTTTTGACAATTTATGAGTATTCGGTTGACAAGGCGAAATGAGGTGAGTGGTCGATTTGATATGCTACTTTTTTCAAATTTCAACATCAGTAAGGATTTCGATTGGCCCGTTGGATACAATGATGCGAAGGAGCGTCTTGGAGAGAGGTGGGTATTAAAAGGACTCACTGATAGTGATTAAAAAAATAATCAAAATTTTAATTGAAACCGTTTCAAAGTTGGAACGGATGATTGGTGGCTCAACGGCGGCCGAGTTTTAGAAAGCTAACCAAACAGATTACTGCACCCCTTTCCTAAAAAGAGATCTGCGTTCGGGGGGAATCGAACCCCCGTCGAATGCTTGGAAGGCATCCATGCTGACCATTACACCACGAACGCACACTTCAAGATTCTTTGCCTTGTCGTATATAAATTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCAAACGCATTTATGATTA</pcr_primer_p1>
		<pcr_primer_p2>CATATCAAATCGACCACTCAC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GGCAAACGCATTTATGATTATCACGCATGCACTGCGATTATGGCCCATAAAACGTGCTCCCCGCGTACGCTGTATTCTTTATGATCTTCCTTTCCGTACAGTCCTTTTGGACTCTGCATCATAAAAATCGAAGGCTCCGCCCTCCCGACGGACTGGCGCGCTCTTCCTCATCTCAAAATTCATCAGACCATTTTTGACAATTTATGAGTATTCGGTTGACAAGGCGAAATGAGGTGAGTGGTCGATTTGATATG</canonical_amplicon>
		<polymorphic_amplicon>GGCAAACGCATTTATGATTATCACGCATGCACTGCGATTATGGCCCATAAAACGTGCTCCCCGCGTACGCTGTATTCTTTATGATCTTCCTTTCCGTACAGTCCTYTTGGACTCTGCATCATAAAAATCGAAGGCTCCGCCCTCCCGACGGACTGGCGCGCTCTTCCTCATCTCAAAATTCATCAGACCATTTTTGACAATTTATGAGTATTCGGTTGACAAGGCGAAATGAGGTGAGTGGTCGATTTGATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28177</snp_id>
        <super_contig>c003400858.Contig1</super_contig>
        <contig_pos>8568</contig_pos>
        <strand></strand>
        <context>AAAAATCGAA[G/A]GCTCCGCCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GATCTTCCTTTCCGTACAGTCCTTTTGGACTCTGCATCATAAAAATCGAA</left_flank>
        <right_flank>GCTCCGCCCTCCCGACGGACTGGCGCGCTCTTCCTCATCTCAAAATTCAT</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTCATCTCTTCATCGCACGACAGTACTCCACAATCTGCTTTGAGCTTAATTATCTCGGTCCCTATAAAAGGTATCAAAAATTTGTTCACTAGTAAAACATTTATCATAAAATAAACAACAGTTTATCAGTTGACAGATTTTTGATATCTCTTACAGGAAGCGAGATAATTAAGTTCAAAAGTATATGACCAGGTTGAGCCAGGCGGTCGCACCGGCCGATGGCTTTGAGTTCAATTATCTCGGTTTTTGCAAAAGATATAAAACATTTATCAATTAATTGGTGATAAAATGACAAACATTTTATCAGTTGGCAAATTTTTGATATCTCTTACAGGAACCTAGATAATTGAGCTCAAAAATAGGATGGCAAACGCATTTATGATTATCACGCATGCACTGCGATTATGGCCCATAAAACGTGCTCCCCGCGTACGCTGTATTCTTTATGATCTTCCTTTCCGTACAGTCCTTTTGGACTCTGCATCATAAAAATCGAAGGCTCCGCCCTCCCGACGGACTGGCGCGCTCTTCCTCATCTCAAAATTCATCAGACCATTTTTGACAATTTATGAGTATTCGGTTGACAAGGCGAAATGAGGTGAGTGGTCGATTTGATATGCTACTTTTTTCAAATTTCAACATCAGTAAGGATTTCGATTGGCCCGTTGGATACAATGATGCGAAGGAGCGTCTTGGAGAGAGGTGGGTATTAAAAGGACTCACTGATAGTGATTAAAAAAATAATCAAAATTTTAATTGAAACCGTTTCAAAGTTGGAACGGATGATTGGTGGCTCAACGGCGGCCGAGTTTTAGAAAGCTAACCAAACAGATTACTGCACCCCTTTCCTAAAAAGAGATCTGCGTTCGGGGGGAATCGAACCCCCGTCGAATGCTTGGAAGGCATCCATGCTGACCATTACACCACGAACGCACACTTCAAGATTCTTTGCCTTGTCGTATATAAATTAGCGGCCTGGCGCGGCGGCAGCCGCCGCG</canonical>
            <polymorphic>TGTTCATCTCTTCATCGCACGACAGTACTCCACAATCTGCTTTGAGCTTAATTATCTCGGTCCCTATAAAAGGTATCAAAAATTTGTTCACTAGTAAAACATTTATCATAAAATAAACAACAGTTTATCAGTTGACAGATTTTTGATATCTCTTACAGGAAGCGAGATAATTAAGTTCAAAAGTATATGACCAGGTTGAGCCAGGCGGTCGCACCGGCCGATGGCTTTGAGTTCAATTATCTCGGTTTTTGCAAAAGATATAAAACATTTATCAATTAATTGGTGATAAAATGACAAACATTTTATCAGTTGGCAAATTTTTGATATCTCTTACAGGAACCTAGATAATTGAGCTCAAAAATAGGATGGCAAACGCATTTATGATTATCACGCATGCACTGCGATTATGGCCCATAAAACGTGCTCCCCGCGTACGCTGTATTCTTTATGATCTTCCTTTCCGTACAGTCCTTTTGGACTCTGCATCATAAAAATCGAARGCTCCGCCCTCCCGACGGACTGGCGCGCTCTTCCTCATCTCAAAATTCATCAGACCATTTTTGACAATTTATGAGTATTCGGTTGACAAGGCGAAATGAGGTGAGTGGTCGATTTGATATGCTACTTTTTTCAAATTTCAACATCAGTAAGGATTTCGATTGGCCCGTTGGATACAATGATGCGAAGGAGCGTCTTGGAGAGAGGTGGGTATTAAAAGGACTCACTGATAGTGATTAAAAAAATAATCAAAATTTTAATTGAAACCGTTTCAAAGTTGGAACGGATGATTGGTGGCTCAACGGCGGCCGAGTTTTAGAAAGCTAACCAAACAGATTACTGCACCCCTTTCCTAAAAAGAGATCTGCGTTCGGGGGGAATCGAACCCCCGTCGAATGCTTGGAAGGCATCCATGCTGACCATTACACCACGAACGCACACTTCAAGATTCTTTGCCTTGTCGTATATAAATTAGCGGCCTGGCGCGGCGGCAGCCGCCGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>498 277 164 61</canonical_bands>
                <polymorphic_bands>662 277 61</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>162 155 154 132 129 91 57 46 17 16 15 11 8 7</canonical_bands>
                <polymorphic_bands>253 155 154 132 129 57 46 17 16 15 11 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGATCTTCCTTTCCGTACA</pcr_primer_p1>
		<pcr_primer_p2>CTCCTTCGCATCATTGTATC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TATGATCTTCCTTTCCGTACAGTCCTTTTGGACTCTGCATCATAAAAATCGAAGGCTCCGCCCTCCCGACGGACTGGCGCGCTCTTCCTCATCTCAAAATTCATCAGACCATTTTTGACAATTTATGAGTATTCGGTTGACAAGGCGAAATGAGGTGAGTGGTCGATTTGATATGCTACTTTTTTCAAATTTCAACATCAGTAAGGATTTCGATTGGCCCGTTGGATACAATGATGCGAAGGAG</canonical_amplicon>
		<polymorphic_amplicon>TATGATCTTCCTTTCCGTACAGTCCTTTTGGACTCTGCATCATAAAAATCGAARGCTCCGCCCTCCCGACGGACTGGCGCGCTCTTCCTCATCTCAAAATTCATCAGACCATTTTTGACAATTTATGAGTATTCGGTTGACAAGGCGAAATGAGGTGAGTGGTCGATTTGATATGCTACTTTTTTCAAATTTCAACATCAGTAAGGATTTCGATTGGCCCGTTGGATACAATGATGCGAAGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28178</snp_id>
        <super_contig>c003400858.Contig1</super_contig>
        <contig_pos>8604</contig_pos>
        <strand></strand>
        <context>CGCTCTTCCT[C/T]ATCTCAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATAAAAATCGAAGGCTCCGCCCTCCCGACGGACTGGCGCGCTCTTCCT</left_flank>
        <right_flank>ATCTCAAAATTCATCAGACCATTTTTGACAATTTATGAGTATTCGGTTGA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGCTTTGAGCTTAATTATCTCGGTCCCTATAAAAGGTATCAAAAATTTGTTCACTAGTAAAACATTTATCATAAAATAAACAACAGTTTATCAGTTGACAGATTTTTGATATCTCTTACAGGAAGCGAGATAATTAAGTTCAAAAGTATATGACCAGGTTGAGCCAGGCGGTCGCACCGGCCGATGGCTTTGAGTTCAATTATCTCGGTTTTTGCAAAAGATATAAAACATTTATCAATTAATTGGTGATAAAATGACAAACATTTTATCAGTTGGCAAATTTTTGATATCTCTTACAGGAACCTAGATAATTGAGCTCAAAAATAGGATGGCAAACGCATTTATGATTATCACGCATGCACTGCGATTATGGCCCATAAAACGTGCTCCCCGCGTACGCTGTATTCTTTATGATCTTCCTTTCCGTACAGTCCTTTTGGACTCTGCATCATAAAAATCGAAGGCTCCGCCCTCCCGACGGACTGGCGCGCTCTTCCTCATCTCAAAATTCATCAGACCATTTTTGACAATTTATGAGTATTCGGTTGACAAGGCGAAATGAGGTGAGTGGTCGATTTGATATGCTACTTTTTTCAAATTTCAACATCAGTAAGGATTTCGATTGGCCCGTTGGATACAATGATGCGAAGGAGCGTCTTGGAGAGAGGTGGGTATTAAAAGGACTCACTGATAGTGATTAAAAAAATAATCAAAATTTTAATTGAAACCGTTTCAAAGTTGGAACGGATGATTGGTGGCTCAACGGCGGCCGAGTTTTAGAAAGCTAACCAAACAGATTACTGCACCCCTTTCCTAAAAAGAGATCTGCGTTCGGGGGGAATCGAACCCCCGTCGAATGCTTGGAAGGCATCCATGCTGACCATTACACCACGAACGCACACTTCAAGATTCTTTGCCTTGTCGTATATAAATTAGCGGCCTGGCGCGGCGGCAGCCGCCGCGATATGTACACCTTGTTAGTTTATGTTGAACGTGGGC</canonical>
            <polymorphic>CTGCTTTGAGCTTAATTATCTCGGTCCCTATAAAAGGTATCAAAAATTTGTTCACTAGTAAAACATTTATCATAAAATAAACAACAGTTTATCAGTTGACAGATTTTTGATATCTCTTACAGGAAGCGAGATAATTAAGTTCAAAAGTATATGACCAGGTTGAGCCAGGCGGTCGCACCGGCCGATGGCTTTGAGTTCAATTATCTCGGTTTTTGCAAAAGATATAAAACATTTATCAATTAATTGGTGATAAAATGACAAACATTTTATCAGTTGGCAAATTTTTGATATCTCTTACAGGAACCTAGATAATTGAGCTCAAAAATAGGATGGCAAACGCATTTATGATTATCACGCATGCACTGCGATTATGGCCCATAAAACGTGCTCCCCGCGTACGCTGTATTCTTTATGATCTTCCTTTCCGTACAGTCCTTTTGGACTCTGCATCATAAAAATCGAAGGCTCCGCCCTCCCGACGGACTGGCGCGCTCTTCCTYATCTCAAAATTCATCAGACCATTTTTGACAATTTATGAGTATTCGGTTGACAAGGCGAAATGAGGTGAGTGGTCGATTTGATATGCTACTTTTTTCAAATTTCAACATCAGTAAGGATTTCGATTGGCCCGTTGGATACAATGATGCGAAGGAGCGTCTTGGAGAGAGGTGGGTATTAAAAGGACTCACTGATAGTGATTAAAAAAATAATCAAAATTTTAATTGAAACCGTTTCAAAGTTGGAACGGATGATTGGTGGCTCAACGGCGGCCGAGTTTTAGAAAGCTAACCAAACAGATTACTGCACCCCTTTCCTAAAAAGAGATCTGCGTTCGGGGGGAATCGAACCCCCGTCGAATGCTTGGAAGGCATCCATGCTGACCATTACACCACGAACGCACACTTCAAGATTCTTTGCCTTGTCGTATATAAATTAGCGGCCTGGCGCGGCGGCAGCCGCCGCGATATGTACACCTTGTTAGTTTATGTTGAACGTGGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGACTCTGCATCATAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGTCCTTTTAATACCCACCTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGGACTCTGCATCATAAAAATCGAAGGCTCCGCCCTCCCGACGGACTGGCGCGCTCTTCCTCATCTCAAAATTCATCAGACCATTTTTGACAATTTATGAGTATTCGGTTGACAAGGCGAAATGAGGTGAGTGGTCGATTTGATATGCTACTTTTTTCAAATTTCAACATCAGTAAGGATTTCGATTGGCCCGTTGGATACAATGATGCGAAGGAGCGTCTTGGAGAGAGGTGGGTATTAAAAGGACT</canonical_amplicon>
		<polymorphic_amplicon>TTGGACTCTGCATCATAAAAATCGAAGGCTCCGCCCTCCCGACGGACTGGCGCGCTCTTCCTYATCTCAAAATTCATCAGACCATTTTTGACAATTTATGAGTATTCGGTTGACAAGGCGAAATGAGGTGAGTGGTCGATTTGATATGCTACTTTTTTCAAATTTCAACATCAGTAAGGATTTCGATTGGCCCGTTGGATACAATGATGCGAAGGAGCGTCTTGGAGAGAGGTGGGTATTAAAAGGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28179</snp_id>
        <super_contig>c003400858.Contig1</super_contig>
        <contig_pos>8616</contig_pos>
        <strand></strand>
        <context>TCTCAAAATT[C/T]ATCAGACCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGGCTCCGCCCTCCCGACGGACTGGCGCGCTCTTCCTCATCTCAAAATT</left_flank>
        <right_flank>ATCAGACCATTTTTGACAATTTATGAGTATTCGGTTGACAAGGCGAAATG</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATTATCTCGGTCCCTATAAAAGGTATCAAAAATTTGTTCACTAGTAAAACATTTATCATAAAATAAACAACAGTTTATCAGTTGACAGATTTTTGATATCTCTTACAGGAAGCGAGATAATTAAGTTCAAAAGTATATGACCAGGTTGAGCCAGGCGGTCGCACCGGCCGATGGCTTTGAGTTCAATTATCTCGGTTTTTGCAAAAGATATAAAACATTTATCAATTAATTGGTGATAAAATGACAAACATTTTATCAGTTGGCAAATTTTTGATATCTCTTACAGGAACCTAGATAATTGAGCTCAAAAATAGGATGGCAAACGCATTTATGATTATCACGCATGCACTGCGATTATGGCCCATAAAACGTGCTCCCCGCGTACGCTGTATTCTTTATGATCTTCCTTTCCGTACAGTCCTTTTGGACTCTGCATCATAAAAATCGAAGGCTCCGCCCTCCCGACGGACTGGCGCGCTCTTCCTCATCTCAAAATTCATCAGACCATTTTTGACAATTTATGAGTATTCGGTTGACAAGGCGAAATGAGGTGAGTGGTCGATTTGATATGCTACTTTTTTCAAATTTCAACATCAGTAAGGATTTCGATTGGCCCGTTGGATACAATGATGCGAAGGAGCGTCTTGGAGAGAGGTGGGTATTAAAAGGACTCACTGATAGTGATTAAAAAAATAATCAAAATTTTAATTGAAACCGTTTCAAAGTTGGAACGGATGATTGGTGGCTCAACGGCGGCCGAGTTTTAGAAAGCTAACCAAACAGATTACTGCACCCCTTTCCTAAAAAGAGATCTGCGTTCGGGGGGAATCGAACCCCCGTCGAATGCTTGGAAGGCATCCATGCTGACCATTACACCACGAACGCACACTTCAAGATTCTTTGCCTTGTCGTATATAAATTAGCGGCCTGGCGCGGCGGCAGCCGCCGCGATATGTACACCTTGTTAGTTTATGTTGAACGTGGGCGTTCGTGGTGTA</canonical>
            <polymorphic>TAATTATCTCGGTCCCTATAAAAGGTATCAAAAATTTGTTCACTAGTAAAACATTTATCATAAAATAAACAACAGTTTATCAGTTGACAGATTTTTGATATCTCTTACAGGAAGCGAGATAATTAAGTTCAAAAGTATATGACCAGGTTGAGCCAGGCGGTCGCACCGGCCGATGGCTTTGAGTTCAATTATCTCGGTTTTTGCAAAAGATATAAAACATTTATCAATTAATTGGTGATAAAATGACAAACATTTTATCAGTTGGCAAATTTTTGATATCTCTTACAGGAACCTAGATAATTGAGCTCAAAAATAGGATGGCAAACGCATTTATGATTATCACGCATGCACTGCGATTATGGCCCATAAAACGTGCTCCCCGCGTACGCTGTATTCTTTATGATCTTCCTTTCCGTACAGTCCTTTTGGACTCTGCATCATAAAAATCGAAGGCTCCGCCCTCCCGACGGACTGGCGCGCTCTTCCTCATCTCAAAATTYATCAGACCATTTTTGACAATTTATGAGTATTCGGTTGACAAGGCGAAATGAGGTGAGTGGTCGATTTGATATGCTACTTTTTTCAAATTTCAACATCAGTAAGGATTTCGATTGGCCCGTTGGATACAATGATGCGAAGGAGCGTCTTGGAGAGAGGTGGGTATTAAAAGGACTCACTGATAGTGATTAAAAAAATAATCAAAATTTTAATTGAAACCGTTTCAAAGTTGGAACGGATGATTGGTGGCTCAACGGCGGCCGAGTTTTAGAAAGCTAACCAAACAGATTACTGCACCCCTTTCCTAAAAAGAGATCTGCGTTCGGGGGGAATCGAACCCCCGTCGAATGCTTGGAAGGCATCCATGCTGACCATTACACCACGAACGCACACTTCAAGATTCTTTGCCTTGTCGTATATAAATTAGCGGCCTGGCGCGGCGGCAGCCGCCGCGATATGTACACCTTGTTAGTTTATGTTGAACGTGGGCGTTCGTGGTGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>298 235 228 117 90 32</canonical_bands>
                <polymorphic_bands>318 298 235 117 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGACTCTGCATCATAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGTCCTTTTAATACCCACCTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGGACTCTGCATCATAAAAATCGAAGGCTCCGCCCTCCCGACGGACTGGCGCGCTCTTCCTCATCTCAAAATTCATCAGACCATTTTTGACAATTTATGAGTATTCGGTTGACAAGGCGAAATGAGGTGAGTGGTCGATTTGATATGCTACTTTTTTCAAATTTCAACATCAGTAAGGATTTCGATTGGCCCGTTGGATACAATGATGCGAAGGAGCGTCTTGGAGAGAGGTGGGTATTAAAAGGACT</canonical_amplicon>
		<polymorphic_amplicon>TTGGACTCTGCATCATAAAAATCGAAGGCTCCGCCCTCCCGACGGACTGGCGCGCTCTTCCTCATCTCAAAATTYATCAGACCATTTTTGACAATTTATGAGTATTCGGTTGACAAGGCGAAATGAGGTGAGTGGTCGATTTGATATGCTACTTTTTTCAAATTTCAACATCAGTAAGGATTTCGATTGGCCCGTTGGATACAATGATGCGAAGGAGCGTCTTGGAGAGAGGTGGGTATTAAAAGGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28180</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>1561</contig_pos>
        <strand>+</strand>
        <context>GGTAAGTCAA[C/T]TGGTTGCTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGCTGCTACCAATGCCGAGGAGAAGAATAAGCAGATTCAGGTAAGTCAA</left_flank>
        <right_flank>TGGTTGCTTGCTTTATGGGTATGGACTATCAAAGTTCGACCTAGAAAGAT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGACTATTGCTGCTAATTTGGAAGCTAGGGTAAGTGTTTTTTTTTTGCTGTTTCAGGACTTTGATAAGATTTCGTGTTATGTTGTTATAACTATTCTGACGAATTTTCATCCAGTGTTGCAAAAATTTCAATTTTTCAGGCCGTCCATGCCAATAAACAAGCGGAAGACCTTCAAAAGGCAATGGAAGAGATCCGTGAAGGACTCCAGCTCGCTGAGCAAGCTCACAAAAACGTCACCATCGTCCTTGAAGAAATCGACACCATGCAGAAACAAGCCAGAGAGCACATTGAAAAGACTCGAAACTCTACTGCTCTTGTTGAGGAGAAGGCTCAGAATGCCAACACGACATTGACAGAGTTGGAGAGTGTGATGAGTGGAGTCAAGGTGGAATATCTCCAGATTTCGGAATCAGCTAAGAATGCGTTGACTACTGTAGATGCCGCGTTGGCAGCTGCTACCAATGCCGAGGAGAAGAATAAGCAGATTCAGGTAAGTCAACTGGTTGCTTGCTTTATGGGTATGGACTATCAAAGTTCGACCTAGAAAGATAAGAATTTTTTTGGAACTTAAAACAGAAAACAATTTTTCATGTTTCAGTTTTCTGTGAATATCTTGTACATTCTTTTCTGATACTATGTCATTATCATAAATTTCATCTTTCAGTCCGACCTGGAACGTGCGAACGAGTTGCTCGAGAAGCGAATGGAAGGAAACGTGGCACCACAGCAGAGAGCCGAAAAATTGAGAGAACGAGCTGGAAAGTTATTGTACCAGGCACAGAGGCACAACGATGATATTGATAGTGAGTTGATTTTTTTAATTGACAGTTTTCTTTTTCAATTTTTTATATTCCAAGTTGACTGGAACAATCTTTTTTAAATCTAATAGTTATTCGATTTTGTCAAATAGTCCCTTCTAACTTTGGCTCAATTTATCTCGGTTCCAATAAAAGATATCAAAAACGTTTTAACTGATAAAATATTGTTCATATTATGATGA</canonical>
            <polymorphic>AGACTATTGCTGCTAATTTGGAAGCTAGGGTAAGTGTTTTTTTTTTGCTGTTTCAGGACTTTGATAAGATTTCGTGTTATGTTGTTATAACTATTCTGACGAATTTTCATCCAGTGTTGCAAAAATTTCAATTTTTCAGGCCGTCCATGCCAATAAACAAGCGGAAGACCTTCAAAAGGCAATGGAAGAGATCCGTGAAGGACTCCAGCTCGCTGAGCAAGCTCACAAAAACGTCACCATCGTCCTTGAAGAAATCGACACCATGCAGAAACAAGCCAGAGAGCACATTGAAAAGACTCGAAACTCTACTGCTCTTGTTGAGGAGAAGGCTCAGAATGCCAACACGACATTGACAGAGTTGGAGAGTGTGATGAGTGGAGTCAAGGTGGAATATCTCCAGATTTCGGAATCAGCTAAGAATGCGTTGACTACTGTAGATGCCGCGTTGGCAGCTGCTACCAATGCCGAGGAGAAGAATAAGCAGATTCAGGTAAGTCAAYTGGTTGCTTGCTTTATGGGTATGGACTATCAAAGTTCGACCTAGAAAGATAAGAATTTTTTTGGAACTTAAAACAGAAAACAATTTTTCATGTTTCAGTTTTCTGTGAATATCTTGTACATTCTTTTCTGATACTATGTCATTATCATAAATTTCATCTTTCAGTCCGACCTGGAACGTGCGAACGAGTTGCTCGAGAAGCGAATGGAAGGAAACGTGGCACCACAGCAGAGAGCCGAAAAATTGAGAGAACGAGCTGGAAAGTTATTGTACCAGGCACAGAGGCACAACGATGATATTGATAGTGAGTTGATTTTTTTAATTGACAGTTTTCTTTTTCAATTTTTTATATTCCAAGTTGACTGGAACAATCTTTTTTAAATCTAATAGTTATTCGATTTTGTCAAATAGTCCCTTCTAACTTTGGCTCAATTTATCTCGGTTCCAATAAAAGATATCAAAAACGTTTTAACTGATAAAATATTGTTCATATTATGATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>426 362 141 71</canonical_bands>
                <polymorphic_bands>433 426 141</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>426 362 141 71</canonical_bands>
                <polymorphic_bands>433 426 141</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGTTGGAGAGTGTGATGAGT</pcr_primer_p1>
		<pcr_primer_p2>CAGAAAACTGAAACATGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGAGTTGGAGAGTGTGATGAGTGGAGTCAAGGTGGAATATCTCCAGATTTCGGAATCAGCTAAGAATGCGTTGACTACTGTAGATGCCGCGTTGGCAGCTGCTACCAATGCCGAGGAGAAGAATAAGCAGATTCAGGTAAGTCAACTGGTTGCTTGCTTTATGGGTATGGACTATCAAAGTTCGACCTAGAAAGATAAGAATTTTTTTGGAACTTAAAACAGAAAACAATTTTTCATGTTTCAGTTTTCTG</canonical_amplicon>
		<polymorphic_amplicon>AGAGTTGGAGAGTGTGATGAGTGGAGTCAAGGTGGAATATCTCCAGATTTCGGAATCAGCTAAGAATGCGTTGACTACTGTAGATGCCGCGTTGGCAGCTGCTACCAATGCCGAGGAGAAGAATAAGCAGATTCAGGTAAGTCAAYTGGTTGCTTGCTTTATGGGTATGGACTATCAAAGTTCGACCTAGAAAGATAAGAATTTTTTTGGAACTTAAAACAGAAAACAATTTTTCATGTTTCAGTTTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28181</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>1601</contig_pos>
        <strand>+</strand>
        <context>CAAAGTTCGA[C/T]CTAGAAAGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTAAGTCAACTGGTTGCTTGCTTTATGGGTATGGACTATCAAAGTTCGA</left_flank>
        <right_flank>CTAGAAAGATAAGAATTTTTTTGGAACTTAAAACAGAAAACAATTTTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTGCTGTTTCAGGACTTTGATAAGATTTCGTGTTATGTTGTTATAACTATTCTGACGAATTTTCATCCAGTGTTGCAAAAATTTCAATTTTTCAGGCCGTCCATGCCAATAAACAAGCGGAAGACCTTCAAAAGGCAATGGAAGAGATCCGTGAAGGACTCCAGCTCGCTGAGCAAGCTCACAAAAACGTCACCATCGTCCTTGAAGAAATCGACACCATGCAGAAACAAGCCAGAGAGCACATTGAAAAGACTCGAAACTCTACTGCTCTTGTTGAGGAGAAGGCTCAGAATGCCAACACGACATTGACAGAGTTGGAGAGTGTGATGAGTGGAGTCAAGGTGGAATATCTCCAGATTTCGGAATCAGCTAAGAATGCGTTGACTACTGTAGATGCCGCGTTGGCAGCTGCTACCAATGCCGAGGAGAAGAATAAGCAGATTCAGGTAAGTCAACTGGTTGCTTGCTTTATGGGTATGGACTATCAAAGTTCGACCTAGAAAGATAAGAATTTTTTTGGAACTTAAAACAGAAAACAATTTTTCATGTTTCAGTTTTCTGTGAATATCTTGTACATTCTTTTCTGATACTATGTCATTATCATAAATTTCATCTTTCAGTCCGACCTGGAACGTGCGAACGAGTTGCTCGAGAAGCGAATGGAAGGAAACGTGGCACCACAGCAGAGAGCCGAAAAATTGAGAGAACGAGCTGGAAAGTTATTGTACCAGGCACAGAGGCACAACGATGATATTGATAGTGAGTTGATTTTTTTAATTGACAGTTTTCTTTTTCAATTTTTTATATTCCAAGTTGACTGGAACAATCTTTTTTAAATCTAATAGTTATTCGATTTTGTCAAATAGTCCCTTCTAACTTTGGCTCAATTTATCTCGGTTCCAATAAAAGATATCAAAAACGTTTTAACTGATAAAATATTGTTCATATTATGATGAACAATTTATCAGTTGACCAAATTTTGATACCTTTCACAGG</canonical>
            <polymorphic>TTTTTTGCTGTTTCAGGACTTTGATAAGATTTCGTGTTATGTTGTTATAACTATTCTGACGAATTTTCATCCAGTGTTGCAAAAATTTCAATTTTTCAGGCCGTCCATGCCAATAAACAAGCGGAAGACCTTCAAAAGGCAATGGAAGAGATCCGTGAAGGACTCCAGCTCGCTGAGCAAGCTCACAAAAACGTCACCATCGTCCTTGAAGAAATCGACACCATGCAGAAACAAGCCAGAGAGCACATTGAAAAGACTCGAAACTCTACTGCTCTTGTTGAGGAGAAGGCTCAGAATGCCAACACGACATTGACAGAGTTGGAGAGTGTGATGAGTGGAGTCAAGGTGGAATATCTCCAGATTTCGGAATCAGCTAAGAATGCGTTGACTACTGTAGATGCCGCGTTGGCAGCTGCTACCAATGCCGAGGAGAAGAATAAGCAGATTCAGGTAAGTCAACTGGTTGCTTGCTTTATGGGTATGGACTATCAAAGTTCGAYCTAGAAAGATAAGAATTTTTTTGGAACTTAAAACAGAAAACAATTTTTCATGTTTCAGTTTTCTGTGAATATCTTGTACATTCTTTTCTGATACTATGTCATTATCATAAATTTCATCTTTCAGTCCGACCTGGAACGTGCGAACGAGTTGCTCGAGAAGCGAATGGAAGGAAACGTGGCACCACAGCAGAGAGCCGAAAAATTGAGAGAACGAGCTGGAAAGTTATTGTACCAGGCACAGAGGCACAACGATGATATTGATAGTGAGTTGATTTTTTTAATTGACAGTTTTCTTTTTCAATTTTTTATATTCCAAGTTGACTGGAACAATCTTTTTTAAATCTAATAGTTATTCGATTTTGTCAAATAGTCCCTTCTAACTTTGGCTCAATTTATCTCGGTTCCAATAAAAGATATCAAAAACGTTTTAACTGATAAAATATTGTTCATATTATGATGAACAATTTATCAGTTGACCAAATTTTGATACCTTTCACAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGTTGGAGAGTGTGATGAGT</pcr_primer_p1>
		<pcr_primer_p2>CAGAAAACTGAAACATGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGAGTTGGAGAGTGTGATGAGTGGAGTCAAGGTGGAATATCTCCAGATTTCGGAATCAGCTAAGAATGCGTTGACTACTGTAGATGCCGCGTTGGCAGCTGCTACCAATGCCGAGGAGAAGAATAAGCAGATTCAGGTAAGTCAACTGGTTGCTTGCTTTATGGGTATGGACTATCAAAGTTCGACCTAGAAAGATAAGAATTTTTTTGGAACTTAAAACAGAAAACAATTTTTCATGTTTCAGTTTTCTG</canonical_amplicon>
		<polymorphic_amplicon>AGAGTTGGAGAGTGTGATGAGTGGAGTCAAGGTGGAATATCTCCAGATTTCGGAATCAGCTAAGAATGCGTTGACTACTGTAGATGCCGCGTTGGCAGCTGCTACCAATGCCGAGGAGAAGAATAAGCAGATTCAGGTAAGTCAACTGGTTGCTTGCTTTATGGGTATGGACTATCAAAGTTCGAYCTAGAAAGATAAGAATTTTTTTGGAACTTAAAACAGAAAACAATTTTTCATGTTTCAGTTTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28182</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>47425</contig_pos>
        <strand></strand>
        <context>ACCCTAACCG[C/A]TGTGCTGTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CATTTTTGTACTTTCATTTCTTCATTTCCACCTAGAAATTACCCTAACCG</left_flank>
        <right_flank>TGTGCTGTGAATAATTTATTTTTCTCTTTTCTCCCACTTGATTTTGCCTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCAAACGAGGACTCGAACTATTTGGAGCGACACAATGACGATTTGGTGAACGGTCTCTCGTCGAAAGTTGCCGCTTTGAAGCGAGTGAGTTCTTAACATAAAATCGACTGTAATTTTTAACTTAAAATTCTTGAGTTTTCAACTTAAAATCGGAAAAAATCCTCTCAAATCGCCAGAACTATGCCTATTGTTTCTAAACCAAATTTCCAGGTAACAATCGCTATCGGAGACGATGTTCGTGAGCAAAATCGCCTTCTCAGCGACATGGACAACGATTTCGACTCATCAAAAGGCCTTCTTCAATCCACAATGCGCCGTTTGGGCATTGTGAGTAAAGCCGGTGGAAAGAACATGCTGTGCTATCTCATTCTCTTCGCCCTTTTCGTCTTTTTTGTTATTTATTGTCTGGCTCGCTAGATTTTCCCTCTTCCAGTGGGGCCTATTTGTACATTTTTGTACTTTCATTTCTTCATTTCCACCTAGAAATTACCCTAACCGCTGTGCTGTGAATAATTTATTTTTCTCTTTTCTCCCACTTGATTTTGCCTGGCATTCTTCATAAAAACGACATTGTATTGTATTGTATTTATTACGTAAAAAATACGTGGAAGAATAAAAAGAAAAAAGAATGAAAAAGAGAACAAATAGACAAAAAGGGACATGGTGTCATAAAATTGATATTTCTTAACCTAGACATGAATAATAGTGGATAATAACAAATCTTTTTCCGAACTTCTGACAGCAGCAGGCTTTTAGATCCGTTTTGTAGAGCTCATCATTTTACTAACTAGGGAAGGTTGTTTGTGGGGTATGGGACTTCGTTATGAGACCTATATCATTCGAAAGCTGAAAATGAGATATTTTCAAAAATGTAATTCGATTTTGCTGCGGACTTATCATATTCGAGAAAATCGAGTTTGAAATTTCATTTTTGAAAAAGCAAAGGGGGGACCCCATGGTGACTTTTTTCCAAAAAATTTTTTTTGTTGAAAAAACATG</canonical>
            <polymorphic>GCCAAACGAGGACTCGAACTATTTGGAGCGACACAATGACGATTTGGTGAACGGTCTCTCGTCGAAAGTTGCCGCTTTGAAGCGAGTGAGTTCTTAACATAAAATCGACTGTAATTTTTAACTTAAAATTCTTGAGTTTTCAACTTAAAATCGGAAAAAATCCTCTCAAATCGCCAGAACTATGCCTATTGTTTCTAAACCAAATTTCCAGGTAACAATCGCTATCGGAGACGATGTTCGTGAGCAAAATCGCCTTCTCAGCGACATGGACAACGATTTCGACTCATCAAAAGGCCTTCTTCAATCCACAATGCGCCGTTTGGGCATTGTGAGTAAAGCCGGTGGAAAGAACATGCTGTGCTATCTCATTCTCTTCGCCCTTTTCGTCTTTTTTGTTATTTATTGTCTGGCTCGCTAGATTTTCCCTCTTCCAGTGGGGCCTATTTGTACATTTTTGTACTTTCATTTCTTCATTTCCACCTAGAAATTACCCTAACCGMTGTGCTGTGAATAATTTATTTTTCTCTTTTCTCCCACTTGATTTTGCCTGGCATTCTTCATAAAAACGACATTGTATTGTATTGTATTTATTACGTAAAAAATACGTGGAAGAATAAAAAGAAAAAAGAATGAAAAAGAGAACAAATAGACAAAAAGGGACATGGTGTCATAAAATTGATATTTCTTAACCTAGACATGAATAATAGTGGATAATAACAAATCTTTTTCCGAACTTCTGACAGCAGCAGGCTTTTAGATCCGTTTTGTAGAGCTCATCATTTTACTAACTAGGGAAGGTTGTTTGTGGGGTATGGGACTTCGTTATGAGACCTATATCATTCGAAAGCTGAAAATGAGATATTTTCAAAAATGTAATTCGATTTTGCTGCGGACTTATCATATTCGAGAAAATCGAGTTTGAAATTTCATTTTTGAAAAAGCAAAGGGGGGACCCCATGGTGACTTTTTTCCAAAAAATTTTTTTTGTTGAAAAAACATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 425 72</canonical_bands>
                <polymorphic_bands>928 72</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCTATTTGTACATTTTTGTACTTT</pcr_primer_p1>
		<pcr_primer_p2>AGAAATATCAATTTTATGACACCAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCCTATTTGTACATTTTTGTACTTTCATTTCTTCATTTCCACCTAGAAATTACCCTAACCGCTGTGCTGTGAATAATTTATTTTTCTCTTTTCTCCCACTTGATTTTGCCTGGCATTCTTCATAAAAACGACATTGTATTGTATTGTATTTATTACGTAAAAAATACGTGGAAGAATAAAAAGAAAAAAGAATGAAAAAGAGAACAAATAGACAAAAAGGGACATGGTGTCATAAAATTGATATTTCT</canonical_amplicon>
		<polymorphic_amplicon>GCCTATTTGTACATTTTTGTACTTTCATTTCTTCATTTCCACCTAGAAATTACCCTAACCGMTGTGCTGTGAATAATTTATTTTTCTCTTTTCTCCCACTTGATTTTGCCTGGCATTCTTCATAAAAACGACATTGTATTGTATTGTATTTATTACGTAAAAAATACGTGGAAGAATAAAAAGAAAAAAGAATGAAAAAGAGAACAAATAGACAAAAAGGGACATGGTGTCATAAAATTGATATTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28183</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>47568</contig_pos>
        <strand></strand>
        <context>AAAAAGAGAA[C/T]AAATAGACAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGTAAAAAATACGTGGAAGAATAAAAAGAAAAAAGAATGAAAAAGAGAA</left_flank>
        <right_flank>AAATAGACAAAAAGGGACATGGTGTCATAAAATTGATATTTCTTAACCTA</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTAAAATCGGAAAAAATCCTCTCAAATCGCCAGAACTATGCCTATTGTTTCTAAACCAAATTTCCAGGTAACAATCGCTATCGGAGACGATGTTCGTGAGCAAAATCGCCTTCTCAGCGACATGGACAACGATTTCGACTCATCAAAAGGCCTTCTTCAATCCACAATGCGCCGTTTGGGCATTGTGAGTAAAGCCGGTGGAAAGAACATGCTGTGCTATCTCATTCTCTTCGCCCTTTTCGTCTTTTTTGTTATTTATTGTCTGGCTCGCTAGATTTTCCCTCTTCCAGTGGGGCCTATTTGTACATTTTTGTACTTTCATTTCTTCATTTCCACCTAGAAATTACCCTAACCGCTGTGCTGTGAATAATTTATTTTTCTCTTTTCTCCCACTTGATTTTGCCTGGCATTCTTCATAAAAACGACATTGTATTGTATTGTATTTATTACGTAAAAAATACGTGGAAGAATAAAAAGAAAAAAGAATGAAAAAGAGAACAAATAGACAAAAAGGGACATGGTGTCATAAAATTGATATTTCTTAACCTAGACATGAATAATAGTGGATAATAACAAATCTTTTTCCGAACTTCTGACAGCAGCAGGCTTTTAGATCCGTTTTGTAGAGCTCATCATTTTACTAACTAGGGAAGGTTGTTTGTGGGGTATGGGACTTCGTTATGAGACCTATATCATTCGAAAGCTGAAAATGAGATATTTTCAAAAATGTAATTCGATTTTGCTGCGGACTTATCATATTCGAGAAAATCGAGTTTGAAATTTCATTTTTGAAAAAGCAAAGGGGGGACCCCATGGTGACTTTTTTCCAAAAAATTTTTTTTGTTGAAAAAACATGAAAAACTTACAGGATCATACTGTGTTCTCTGAAACTGTTTGAAATTGTGGTTACATGCTTTTGAAAACTATTTTTGAGTCATTTTTTCAAACCACTTTTTGACTTTTGAGAATAGAAAGTTAATGGTTTACAAAAGATTTTGG</canonical>
            <polymorphic>CTTAAAATCGGAAAAAATCCTCTCAAATCGCCAGAACTATGCCTATTGTTTCTAAACCAAATTTCCAGGTAACAATCGCTATCGGAGACGATGTTCGTGAGCAAAATCGCCTTCTCAGCGACATGGACAACGATTTCGACTCATCAAAAGGCCTTCTTCAATCCACAATGCGCCGTTTGGGCATTGTGAGTAAAGCCGGTGGAAAGAACATGCTGTGCTATCTCATTCTCTTCGCCCTTTTCGTCTTTTTTGTTATTTATTGTCTGGCTCGCTAGATTTTCCCTCTTCCAGTGGGGCCTATTTGTACATTTTTGTACTTTCATTTCTTCATTTCCACCTAGAAATTACCCTAACCGCTGTGCTGTGAATAATTTATTTTTCTCTTTTCTCCCACTTGATTTTGCCTGGCATTCTTCATAAAAACGACATTGTATTGTATTGTATTTATTACGTAAAAAATACGTGGAAGAATAAAAAGAAAAAAGAATGAAAAAGAGAAYAAATAGACAAAAAGGGACATGGTGTCATAAAATTGATATTTCTTAACCTAGACATGAATAATAGTGGATAATAACAAATCTTTTTCCGAACTTCTGACAGCAGCAGGCTTTTAGATCCGTTTTGTAGAGCTCATCATTTTACTAACTAGGGAAGGTTGTTTGTGGGGTATGGGACTTCGTTATGAGACCTATATCATTCGAAAGCTGAAAATGAGATATTTTCAAAAATGTAATTCGATTTTGCTGCGGACTTATCATATTCGAGAAAATCGAGTTTGAAATTTCATTTTTGAAAAAGCAAAGGGGGGACCCCATGGTGACTTTTTTCCAAAAAATTTTTTTTGTTGAAAAAACATGAAAAACTTACAGGATCATACTGTGTTCTCTGAAACTGTTTGAAATTGTGGTTACATGCTTTTGAAAACTATTTTTGAGTCATTTTTTCAAACCACTTTTTGACTTTTGAGAATAGAAAGTTAATGGTTTACAAAAGATTTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTTTTCTCCCACTTGATTT</pcr_primer_p1>
		<pcr_primer_p2>GCTCTACAAAACGGATCTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTTTTCTCCCACTTGATTTTGCCTGGCATTCTTCATAAAAACGACATTGTATTGTATTGTATTTATTACGTAAAAAATACGTGGAAGAATAAAAAGAAAAAAGAATGAAAAAGAGAACAAATAGACAAAAAGGGACATGGTGTCATAAAATTGATATTTCTTAACCTAGACATGAATAATAGTGGATAATAACAAATCTTTTTCCGAACTTCTGACAGCAGCAGGCTTTTAGATCCGTTTTGTAGAGC</canonical_amplicon>
		<polymorphic_amplicon>CTCTTTTCTCCCACTTGATTTTGCCTGGCATTCTTCATAAAAACGACATTGTATTGTATTGTATTTATTACGTAAAAAATACGTGGAAGAATAAAAAGAAAAAAGAATGAAAAAGAGAAYAAATAGACAAAAAGGGACATGGTGTCATAAAATTGATATTTCTTAACCTAGACATGAATAATAGTGGATAATAACAAATCTTTTTCCGAACTTCTGACAGCAGCAGGCTTTTAGATCCGTTTTGTAGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28185</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>56124</contig_pos>
        <strand>+</strand>
        <context>ATTTTGTACA[A/G]AAWATTGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAAATGTTCTAAGTATTTCAAATTGTCATCAAAATTGCTATTTTGTACA</left_flank>
        <right_flank>AATATTGAATTTCAATAGTTCAATCAAGTTTTCTACAAAAATCAGAATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACAGCATATTTTGACAGTTTATACATAAACTTATTCCTCTGTCCAAGTTTCAGAAAAAATTATTTTCAGTCAATTTTGCCATTTTTCAGATTTTTGGAATAAATCTTGAATAACTTACCACTATCTCTCTTTTCCTTCCCCACATTAGGACTAACTCTTGCGGGTTAGTCCTTCTTAGCTTCGTTTTTTACCATTTTCTTTCCCCGGTATTACCATCACTACCACCATCACTCCTTATTTCTTCAAATCCTTCGAATAAACGAAATATATATAAAAAAACTTTGCTTCTAGGTAAGATTTTGAGCTGAACATTAGAGGGAATATTTTAGTACTGATCATGAACATGTTGCGAGTGTTCAAAGCTTTTTTGAGCCTCGGAAACTTGAATCTGAGCTCGAGCTTTGAGCTGAAAAAGTATACCCAACTGAAAATTTTTCAAAGCTGTCTAAAATGTTCTAAGTATTTCAAATTGTCATCAAAATTGCTATTTTGTACAGAATATTGAATTTCAATAGTTCAATCAAGTTTTCTACAAAAATCAGAATCACCGAATTTCAAGATCAGTTTTTCATATGCTGTTTTAGGACTATTTTAGCAGTTTCCAACCAAAAATGTTCAATTTAGCTCTCTAAAATACTTGAGATTTTTCCTTTTCCCGGTTGTCGTATATATATTGACCACTTGCAAATGGGTTTTTAGGACGGTGCATGTTCAGGGAAAGTGCTAAAATTGTGAAATTTTGTGTCTAGAGGTTATTTTTGATTGTGAATCGAATGGCGTTTACCGCTTTTTGATATCATTTCTAGTTTTGTCTGTGCACCCAAAATGTAAGGGGGTCGTATAGATATTGCCCGTACTGTATATTCTAAATTTAAAAGATCATGGCTACCCTCTTAATTTTTAATAATTATTCGATTCCAGCTAATTTCAGAAGGTCCTCATAAATTTAGGACCTCAAATATATAACAAAAATAATATTTTCTGATTCATGAGTTCG</canonical>
            <polymorphic>AAAACAGCATATTTTGACAGTTTATACATAAACTTATTCCTCTGTCCAAGTTTCAGAAAAAATTATTTTCAGTCAATTTTGCCATTTTTCAGATTTTTGGAATAAATCTTGAATAACTTACCACTATCTCTCTTTTCCTTCCCCACATTAGGACTAACTCTTGCGGGTTAGTCCTTCTTAGCTTCGTTTTTTACCATTTTCTTTCCCCGGTATTACCATCACTACCACCATCACTCCTTATTTCTTCAAATCCTTCGAATAAACGAAATATATATAAAAAAACTTTGCTTCTAGGTAAGATTTTGAGCTGAACATTAGAGGGAATATTTTAGTACTGATCATGAACATGTTGCGAGTGTTCAAAGCTTTTTTGAGCCTCGGAAACTTGAATCTGAGCTCGAGCTTTGAGCTGAAAAAGTATACCCAACTGAAAATTTTTCAAAGCTGTCTAAAATGTTCTAAGTATTTCAAATTGTCATCAAAATTGCTATTTTGTACARAATATTGAATTTCAATAGTTCAATCAAGTTTTCTACAAAAATCAGAATCACCGAATTTCAAGATCAGTTTTTCATATGCTGTTTTAGGACTATTTTAGCAGTTTCCAACCAAAAATGTTCAATTTAGCTCTCTAAAATACTTGAGATTTTTCCTTTTCCCGGTTGTCGTATATATATTGACCACTTGCAAATGGGTTTTTAGGACGGTGCATGTTCAGGGAAAGTGCTAAAATTGTGAAATTTTGTGTCTAGAGGTTATTTTTGATTGTGAATCGAATGGCGTTTACCGCTTTTTGATATCATTTCTAGTTTTGTCTGTGCACCCAAAATGTAAGGGGGTCGTATAGATATTGCCCGTACTGTATATTCTAAATTTAAAAGATCATGGCTACCCTCTTAATTTTTAATAATTATTCGATTCCAGCTAATTTCAGAAGGTCCTCATAAATTTAGGACCTCAAATATATAACAAAAATAATATTTTCTGATTCATGAGTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAAAAAGTATACCCAACTGAA</pcr_primer_p1>
		<pcr_primer_p2>GGAAAAGGAAAAATCTCAAGTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAAAGTATACCCAACTGAAAATTTTTCAAAGCTGTCTAAAATGTTCTAAGTATTTCAAATTGTCATCAAAATTGCTATTTTGTACAGAATATTGAATTTCAATAGTTCAATCAAGTTTTCTACAAAAATCAGAATCACCGAATTTCAAGATCAGTTTTTCATATGCTGTTTTAGGACTATTTTAGCAGTTTCCAACCAAAAATGTTCAATTTAGCTCTCTAAAATACTTGAGATTTTTCCTTTTCC</canonical_amplicon>
		<polymorphic_amplicon>CTGAAAAAGTATACCCAACTGAAAATTTTTCAAAGCTGTCTAAAATGTTCTAAGTATTTCAAATTGTCATCAAAATTGCTATTTTGTACARAATATTGAATTTCAATAGTTCAATCAAGTTTTCTACAAAAATCAGAATCACCGAATTTCAAGATCAGTTTTTCATATGCTGTTTTAGGACTATTTTAGCAGTTTCCAACCAAAAATGTTCAATTTAGCTCTCTAAAATACTTGAGATTTTTCCTTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28186</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>56127</contig_pos>
        <strand>+</strand>
        <context>TTGTACARAA[A/T]ATTGAATTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATGTTCTAAGTATTTCAAATTGTCATCAAAATTGCTATTTTGTACAGAA</left_flank>
        <right_flank>ATTGAATTTCAATAGTTCAATCAAGTTTTCTACAAAAATCAGAATCACCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGCATATTTTGACAGTTTATACATAAACTTATTCCTCTGTCCAAGTTTCAGAAAAAATTATTTTCAGTCAATTTTGCCATTTTTCAGATTTTTGGAATAAATCTTGAATAACTTACCACTATCTCTCTTTTCCTTCCCCACATTAGGACTAACTCTTGCGGGTTAGTCCTTCTTAGCTTCGTTTTTTACCATTTTCTTTCCCCGGTATTACCATCACTACCACCATCACTCCTTATTTCTTCAAATCCTTCGAATAAACGAAATATATATAAAAAAACTTTGCTTCTAGGTAAGATTTTGAGCTGAACATTAGAGGGAATATTTTAGTACTGATCATGAACATGTTGCGAGTGTTCAAAGCTTTTTTGAGCCTCGGAAACTTGAATCTGAGCTCGAGCTTTGAGCTGAAAAAGTATACCCAACTGAAAATTTTTCAAAGCTGTCTAAAATGTTCTAAGTATTTCAAATTGTCATCAAAATTGCTATTTTGTACAGAATATTGAATTTCAATAGTTCAATCAAGTTTTCTACAAAAATCAGAATCACCGAATTTCAAGATCAGTTTTTCATATGCTGTTTTAGGACTATTTTAGCAGTTTCCAACCAAAAATGTTCAATTTAGCTCTCTAAAATACTTGAGATTTTTCCTTTTCCCGGTTGTCGTATATATATTGACCACTTGCAAATGGGTTTTTAGGACGGTGCATGTTCAGGGAAAGTGCTAAAATTGTGAAATTTTGTGTCTAGAGGTTATTTTTGATTGTGAATCGAATGGCGTTTACCGCTTTTTGATATCATTTCTAGTTTTGTCTGTGCACCCAAAATGTAAGGGGGTCGTATAGATATTGCCCGTACTGTATATTCTAAATTTAAAAGATCATGGCTACCCTCTTAATTTTTAATAATTATTCGATTCCAGCTAATTTCAGAAGGTCCTCATAAATTTAGGACCTCAAATATATAACAAAAATAATATTTTCTGATTCATGAGTTCGTAA</canonical>
            <polymorphic>ACAGCATATTTTGACAGTTTATACATAAACTTATTCCTCTGTCCAAGTTTCAGAAAAAATTATTTTCAGTCAATTTTGCCATTTTTCAGATTTTTGGAATAAATCTTGAATAACTTACCACTATCTCTCTTTTCCTTCCCCACATTAGGACTAACTCTTGCGGGTTAGTCCTTCTTAGCTTCGTTTTTTACCATTTTCTTTCCCCGGTATTACCATCACTACCACCATCACTCCTTATTTCTTCAAATCCTTCGAATAAACGAAATATATATAAAAAAACTTTGCTTCTAGGTAAGATTTTGAGCTGAACATTAGAGGGAATATTTTAGTACTGATCATGAACATGTTGCGAGTGTTCAAAGCTTTTTTGAGCCTCGGAAACTTGAATCTGAGCTCGAGCTTTGAGCTGAAAAAGTATACCCAACTGAAAATTTTTCAAAGCTGTCTAAAATGTTCTAAGTATTTCAAATTGTCATCAAAATTGCTATTTTGTACAGAAWATTGAATTTCAATAGTTCAATCAAGTTTTCTACAAAAATCAGAATCACCGAATTTCAAGATCAGTTTTTCATATGCTGTTTTAGGACTATTTTAGCAGTTTCCAACCAAAAATGTTCAATTTAGCTCTCTAAAATACTTGAGATTTTTCCTTTTCCCGGTTGTCGTATATATATTGACCACTTGCAAATGGGTTTTTAGGACGGTGCATGTTCAGGGAAAGTGCTAAAATTGTGAAATTTTGTGTCTAGAGGTTATTTTTGATTGTGAATCGAATGGCGTTTACCGCTTTTTGATATCATTTCTAGTTTTGTCTGTGCACCCAAAATGTAAGGGGGTCGTATAGATATTGCCCGTACTGTATATTCTAAATTTAAAAGATCATGGCTACCCTCTTAATTTTTAATAATTATTCGATTCCAGCTAATTTCAGAAGGTCCTCATAAATTTAGGACCTCAAATATATAACAAAAATAATATTTTCTGATTCATGAGTTCGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>476 322 178 24</canonical_bands>
                <polymorphic_bands>654 322 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAAAAAGTATACCCAACTGAA</pcr_primer_p1>
		<pcr_primer_p2>GGAAAAGGAAAAATCTCAAGTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAAAGTATACCCAACTGAAAATTTTTCAAAGCTGTCTAAAATGTTCTAAGTATTTCAAATTGTCATCAAAATTGCTATTTTGTACAGAATATTGAATTTCAATAGTTCAATCAAGTTTTCTACAAAAATCAGAATCACCGAATTTCAAGATCAGTTTTTCATATGCTGTTTTAGGACTATTTTAGCAGTTTCCAACCAAAAATGTTCAATTTAGCTCTCTAAAATACTTGAGATTTTTCCTTTTCC</canonical_amplicon>
		<polymorphic_amplicon>CTGAAAAAGTATACCCAACTGAAAATTTTTCAAAGCTGTCTAAAATGTTCTAAGTATTTCAAATTGTCATCAAAATTGCTATTTTGTACAGAAWATTGAATTTCAATAGTTCAATCAAGTTTTCTACAAAAATCAGAATCACCGAATTTCAAGATCAGTTTTTCATATGCTGTTTTAGGACTATTTTAGCAGTTTCCAACCAAAAATGTTCAATTTAGCTCTCTAAAATACTTGAGATTTTTCCTTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28187</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>57996</contig_pos>
        <strand>+</strand>
        <context>ACATTTACGA[A/G]AAAAATTAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGAGGTTGCTATGAACATACGTACAAACGTATGAAATGTACATTTACGA</left_flank>
        <right_flank>AAAAATTAGAAAGGAAAATACAATAGTTACACAAATGACGATATCAAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGCACTGAAAAATTTCAGTTTTTTTTCTGTTTCAAATAGTCTACAGTAAGCCTACAATTTTTAACAAAATACTCCTTTAGCACTCCACTTTTCATATCTAACCTGAAAGCCAAACCCGAAAATCTCCTTGACACTCGGTACATCGTTGACCCCTAGGTGTAGGGGTACTGTCATTCTGAAAAAAAATTTTAAAGAATTTCTAGAATTTTCCAATAAAAAATACCAATTGATAGATGACGTGCAAAATGTCAGAAAAAAAGTCTTGAAAAAAGAAGAAAAAGACACCTCTTGGTGAAGGTGACTAGAACTAGAAATGATTCGCGGGAAATGTGTGAAAAAAAAGAAGAAACAGAAGAAGAAGAAGAAGAAGAAGAAGCAAATTTGTTAAATTCTACAACATTTGTCTTTTTTGCCCCACTATCTATCATCAAGATGATAATGATGATGATGAGGTTGCTATGAACATACGTACAAACGTATGAAATGTACATTTACGAGAAAAATTAGAAAGGAAAATACAATAGTTACACAAATGACGATATCAAATCGGAATTGAAACGAGAGGACAAGAAAAATGGGTTCGAGAGGAAATTAGAAAAATTGAAGGTCAAGGACGACACTCCCACTTTTTACCGAACAACTGATTTACCAGTTTTCATGTGACGAGGCTATTGTTAGCTGATGAGAAAGGAGTGATCACCCATTTTTATGTCGTTTTGTGTTTTTGGTTTAGAACGGTTTAGGTGATAAGGGACATCTGATATGGGTTCTGATTAGATTTTTGTAATTGTTTTGAAACAAAATATCATTAAAAGGCAGGGGTGAGTCTTCAAATTATTTTTGAAGACCAGGAAATTACTAGTTTCTGGATTTTTCAAGTATGGAAAATACGGTTTCAGGATTTGCTTTCGTATTTGTATTCAATATAAAAATGTATGCAAAGTTTCACAGTTTCAGATTAATATGTTTAGGTACAAGATTTCACAATCAGTGATGAA</canonical>
            <polymorphic>TTCGCACTGAAAAATTTCAGTTTTTTTTCTGTTTCAAATAGTCTACAGTAAGCCTACAATTTTTAACAAAATACTCCTTTAGCACTCCACTTTTCATATCTAACCTGAAAGCCAAACCCGAAAATCTCCTTGACACTCGGTACATCGTTGACCCCTAGGTGTAGGGGTACTGTCATTCTGAAAAAAAATTTTAAAGAATTTCTAGAATTTTCCAATAAAAAATACCAATTGATAGATGACGTGCAAAATGTCAGAAAAAAAGTCTTGAAAAAAGAAGAAAAAGACACCTCTTGGTGAAGGTGACTAGAACTAGAAATGATTCGCGGGAAATGTGTGAAAAAAAAGAAGAAACAGAAGAAGAAGAAGAAGAAGAAGAAGCAAATTTGTTAAATTCTACAACATTTGTCTTTTTTGCCCCACTATCTATCATCAAGATGATAATGATGATGATGAGGTTGCTATGAACATACGTACAAACGTATGAAATGTACATTTACGARAAAAATTAGAAAGGAAAATACAATAGTTACACAAATGACGATATCAAATCGGAATTGAAACGAGAGGACAAGAAAAATGGGTTCGAGAGGAAATTAGAAAAATTGAAGGTCAAGGACGACACTCCCACTTTTTACCGAACAACTGATTTACCAGTTTTCATGTGACGAGGCTATTGTTAGCTGATGAGAAAGGAGTGATCACCCATTTTTATGTCGTTTTGTGTTTTTGGTTTAGAACGGTTTAGGTGATAAGGGACATCTGATATGGGTTCTGATTAGATTTTTGTAATTGTTTTGAAACAAAATATCATTAAAAGGCAGGGGTGAGTCTTCAAATTATTTTTGAAGACCAGGAAATTACTAGTTTCTGGATTTTTCAAGTATGGAAAATACGGTTTCAGGATTTGCTTTCGTATTTGTATTCAATATAAAAATGTATGCAAAGTTTCACAGTTTCAGATTAATATGTTTAGGTACAAGATTTCACAATCAGTGATGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATGATGAGGTTGCTATGA</pcr_primer_p1>
		<pcr_primer_p2>CCTTTCTCATCAGCTAACAATAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGATGATGAGGTTGCTATGAACATACGTACAAACGTATGAAATGTACATTTACGAGAAAAATTAGAAAGGAAAATACAATAGTTACACAAATGACGATATCAAATCGGAATTGAAACGAGAGGACAAGAAAAATGGGTTCGAGAGGAAATTAGAAAAATTGAAGGTCAAGGACGACACTCCCACTTTTTACCGAACAACTGATTTACCAGTTTTCATGTGACGAGGCTATTGTTAGCTGATGAGAAAGG</canonical_amplicon>
		<polymorphic_amplicon>ATGATGATGAGGTTGCTATGAACATACGTACAAACGTATGAAATGTACATTTACGARAAAAATTAGAAAGGAAAATACAATAGTTACACAAATGACGATATCAAATCGGAATTGAAACGAGAGGACAAGAAAAATGGGTTCGAGAGGAAATTAGAAAAATTGAAGGTCAAGGACGACACTCCCACTTTTTACCGAACAACTGATTTACCAGTTTTCATGTGACGAGGCTATTGTTAGCTGATGAGAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28188</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>110518</contig_pos>
        <strand></strand>
        <context>CATTTATGCT[A/T]GACATGTCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCCTACTCTCTGTCCTCTATTCTATGTATTATTCTATGTTCATTTATGCT</left_flank>
        <right_flank>GACATGTCTTATTCTCCTCTCCCTATTTCTTTTTAATGGTCACTCTAGTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTGAGAAACACGTGATTCCCAATCAAAATTTAGTAAAAATTCACACGTAATTAATTGCGTTATCCCCCCAACAAAAAAGAACAAAGAAATATCGAATCTATCCAGAATTCCTTCACAAGAAGGCTTTATAGTAGGAATGTAGGCAGACATATTACTCCACAAGACTCAGATTACATGAATGCTAGTGAACGTAACCTCCTTTATGGTCTCTCCTCTCTGGAACACAGACGACAAACAATTGATAAAAAACTGATATCTAAAATAATTTTAGGAAAAGTGGGTCTAAACCAGACTGACTTTTTCCAAGTGTCCACAAATAATCGAACAAGATCAAAATCAAGATACAAATGGAAAAGAGCTAAAACAAAAATTAGGCAACACTTTTTCGTCAATAGGGCGCTTAGTAAAATGATTTAGTTACTGCTGAACAATTGCTCACTTTTCTGGCCCTACTCTCTGTCCTCTATTCTATGTATTATTCTATGTTCATTTATGCTAGACATGTCTTATTCTCCTCTCCCTATTTCTTTTTAATGGTCACTCTAGTTCTAGTTCATTCTATTATTTTACATTTCGTCTCACTAGAGTTCATTATTTATCCATTTGGAATCTGATTATCATGTATTTTAATGTGTTTTTCCTTTCTTTCCACGATTCTTGCAATCGTAAATAAATAAATAAATAAATAAATAAACATTTTGTTAGTTGAAAACTTTTTGATGTCTTGCACAGGAAGTTGAATAAATTAGAATAAAATTTAGTCAACTCATTAGCATTGCTCAGAAAGGTTTCAGTTTTCAAAATTGTTAGTTGAAACCATAAAAATTCGTGAGTTTCAAAAATTGTTATTTCTTGTTCTATCAGTCTGAAACTTTCCGAGAAAAACGAGCTGAAACCAAATTACCATTTTAATAATCTATAAATTTTTTGGCACATTTTGATCCAAATGTCAAGATAAATCACATGAACTTTAACAAAGTACCGTATCACCTTGTAAT</canonical>
            <polymorphic>CCTTGAGAAACACGTGATTCCCAATCAAAATTTAGTAAAAATTCACACGTAATTAATTGCGTTATCCCCCCAACAAAAAAGAACAAAGAAATATCGAATCTATCCAGAATTCCTTCACAAGAAGGCTTTATAGTAGGAATGTAGGCAGACATATTACTCCACAAGACTCAGATTACATGAATGCTAGTGAACGTAACCTCCTTTATGGTCTCTCCTCTCTGGAACACAGACGACAAACAATTGATAAAAAACTGATATCTAAAATAATTTTAGGAAAAGTGGGTCTAAACCAGACTGACTTTTTCCAAGTGTCCACAAATAATCGAACAAGATCAAAATCAAGATACAAATGGAAAAGAGCTAAAACAAAAATTAGGCAACACTTTTTCGTCAATAGGGCGCTTAGTAAAATGATTTAGTTACTGCTGAACAATTGCTCACTTTTCTGGCCCTACTCTCTGTCCTCTATTCTATGTATTATTCTATGTTCATTTATGCTWGACATGTCTTATTCTCCTCTCCCTATTTCTTTTTAATGGTCACTCTAGTTCTAGTTCATTCTATTATTTTACATTTCGTCTCACTAGAGTTCATTATTTATCCATTTGGAATCTGATTATCATGTATTTTAATGTGTTTTTCCTTTCTTTCCACGATTCTTGCAATCGTAAATAAATAAATAAATAAATAAATAAACATTTTGTTAGTTGAAAACTTTTTGATGTCTTGCACAGGAAGTTGAATAAATTAGAATAAAATTTAGTCAACTCATTAGCATTGCTCAGAAAGGTTTCAGTTTTCAAAATTGTTAGTTGAAACCATAAAAATTCGTGAGTTTCAAAAATTGTTATTTCTTGTTCTATCAGTCTGAAACTTTCCGAGAAAAACGAGCTGAAACCAAATTACCATTTTAATAATCTATAAATTTTTTGGCACATTTTGATCCAAATGTCAAGATAAATCACATGAACTTTAACAAAGTACCGTATCACCTTGTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>416 314 184 47 33 6</canonical_bands>
                <polymorphic_bands>416 361 184 33 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAACAAAAATTAGGCAACACT</pcr_primer_p1>
		<pcr_primer_p2>ATTCCAAATGGATAAATAATGAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAAAACAAAAATTAGGCAACACTTTTTCGTCAATAGGGCGCTTAGTAAAATGATTTAGTTACTGCTGAACAATTGCTCACTTTTCTGGCCCTACTCTCTGTCCTCTATTCTATGTATTATTCTATGTTCATTTATGCTAGACATGTCTTATTCTCCTCTCCCTATTTCTTTTTAATGGTCACTCTAGTTCTAGTTCATTCTATTATTTTACATTTCGTCTCACTAGAGTTCATTATTTATCCATTTGGAAT</canonical_amplicon>
		<polymorphic_amplicon>TAAAACAAAAATTAGGCAACACTTTTTCGTCAATAGGGCGCTTAGTAAAATGATTTAGTTACTGCTGAACAATTGCTCACTTTTCTGGCCCTACTCTCTGTCCTCTATTCTATGTATTATTCTATGTTCATTTATGCTWGACATGTCTTATTCTCCTCTCCCTATTTCTTTTTAATGGTCACTCTAGTTCTAGTTCATTCTATTATTTTACATTTCGTCTCACTAGAGTTCATTATTTATCCATTTGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28189</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>110607</contig_pos>
        <strand></strand>
        <context>TCTCACTAGA[G/A]TTCATTATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTCACTCTAGTTCTAGTTCATTCTATTATTTTACATTTCGTCTCACTAGA</left_flank>
        <right_flank>TTCATTATTTATCCATTTGGAATCTGATTATCATGTATTTTAATGTGTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATCGAATCTATCCAGAATTCCTTCACAAGAAGGCTTTATAGTAGGAATGTAGGCAGACATATTACTCCACAAGACTCAGATTACATGAATGCTAGTGAACGTAACCTCCTTTATGGTCTCTCCTCTCTGGAACACAGACGACAAACAATTGATAAAAAACTGATATCTAAAATAATTTTAGGAAAAGTGGGTCTAAACCAGACTGACTTTTTCCAAGTGTCCACAAATAATCGAACAAGATCAAAATCAAGATACAAATGGAAAAGAGCTAAAACAAAAATTAGGCAACACTTTTTCGTCAATAGGGCGCTTAGTAAAATGATTTAGTTACTGCTGAACAATTGCTCACTTTTCTGGCCCTACTCTCTGTCCTCTATTCTATGTATTATTCTATGTTCATTTATGCTAGACATGTCTTATTCTCCTCTCCCTATTTCTTTTTAATGGTCACTCTAGTTCTAGTTCATTCTATTATTTTACATTTCGTCTCACTAGAGTTCATTATTTATCCATTTGGAATCTGATTATCATGTATTTTAATGTGTTTTTCCTTTCTTTCCACGATTCTTGCAATCGTAAATAAATAAATAAATAAATAAATAAACATTTTGTTAGTTGAAAACTTTTTGATGTCTTGCACAGGAAGTTGAATAAATTAGAATAAAATTTAGTCAACTCATTAGCATTGCTCAGAAAGGTTTCAGTTTTCAAAATTGTTAGTTGAAACCATAAAAATTCGTGAGTTTCAAAAATTGTTATTTCTTGTTCTATCAGTCTGAAACTTTCCGAGAAAAACGAGCTGAAACCAAATTACCATTTTAATAATCTATAAATTTTTTGGCACATTTTGATCCAAATGTCAAGATAAATCACATGAACTTTAACAAAGTACCGTATCACCTTGTAATGCACCCCTTGCCTTTTGAGCTCAATTATCTTGGTTCTTGTCAAAGATATAAAGAAGTTGTCAATTAATAACATGTTGGCAATTTTAAGA</canonical>
            <polymorphic>AATATCGAATCTATCCAGAATTCCTTCACAAGAAGGCTTTATAGTAGGAATGTAGGCAGACATATTACTCCACAAGACTCAGATTACATGAATGCTAGTGAACGTAACCTCCTTTATGGTCTCTCCTCTCTGGAACACAGACGACAAACAATTGATAAAAAACTGATATCTAAAATAATTTTAGGAAAAGTGGGTCTAAACCAGACTGACTTTTTCCAAGTGTCCACAAATAATCGAACAAGATCAAAATCAAGATACAAATGGAAAAGAGCTAAAACAAAAATTAGGCAACACTTTTTCGTCAATAGGGCGCTTAGTAAAATGATTTAGTTACTGCTGAACAATTGCTCACTTTTCTGGCCCTACTCTCTGTCCTCTATTCTATGTATTATTCTATGTTCATTTATGCTAGACATGTCTTATTCTCCTCTCCCTATTTCTTTTTAATGGTCACTCTAGTTCTAGTTCATTCTATTATTTTACATTTCGTCTCACTAGARTTCATTATTTATCCATTTGGAATCTGATTATCATGTATTTTAATGTGTTTTTCCTTTCTTTCCACGATTCTTGCAATCGTAAATAAATAAATAAATAAATAAATAAACATTTTGTTAGTTGAAAACTTTTTGATGTCTTGCACAGGAAGTTGAATAAATTAGAATAAAATTTAGTCAACTCATTAGCATTGCTCAGAAAGGTTTCAGTTTTCAAAATTGTTAGTTGAAACCATAAAAATTCGTGAGTTTCAAAAATTGTTATTTCTTGTTCTATCAGTCTGAAACTTTCCGAGAAAAACGAGCTGAAACCAAATTACCATTTTAATAATCTATAAATTTTTTGGCACATTTTGATCCAAATGTCAAGATAAATCACATGAACTTTAACAAAGTACCGTATCACCTTGTAATGCACCCCTTGCCTTTTGAGCTCAATTATCTTGGTTCTTGTCAAAGATATAAAGAAGTTGTCAATTAATAACATGTTGGCAATTTTAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCTTATTCTCCTCTCCCTATT</pcr_primer_p1>
		<pcr_primer_p2>TTCTAATTTATTCAACTTCCTGTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTCTTATTCTCCTCTCCCTATTTCTTTTTAATGGTCACTCTAGTTCTAGTTCATTCTATTATTTTACATTTCGTCTCACTAGAGTTCATTATTTATCCATTTGGAATCTGATTATCATGTATTTTAATGTGTTTTTCCTTTCTTTCCACGATTCTTGCAATCGTAAATAAATAAATAAATAAATAAATAAACATTTTGTTAGTTGAAAACTTTTTGATGTCTTGCACAGGAAGTTGAATAAATTAGAA</canonical_amplicon>
		<polymorphic_amplicon>TGTCTTATTCTCCTCTCCCTATTTCTTTTTAATGGTCACTCTAGTTCTAGTTCATTCTATTATTTTACATTTCGTCTCACTAGARTTCATTATTTATCCATTTGGAATCTGATTATCATGTATTTTAATGTGTTTTTCCTTTCTTTCCACGATTCTTGCAATCGTAAATAAATAAATAAATAAATAAATAAACATTTTGTTAGTTGAAAACTTTTTGATGTCTTGCACAGGAAGTTGAATAAATTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28190</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>113905</contig_pos>
        <strand>+</strand>
        <context>CATTCTGAAA[C/T]TTTTTTGTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAGAGACATGACTGTCGAGGTCAGCAAACTCGACATTGCCATTCTGAAA</left_flank>
        <right_flank>TTTTTTGTCTGGAACTATTATTTTAAAGCTTATATAAGGCTGCCATTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTTTTCCCTTTAATTTAAATTTATAAGGATAAAACTGTTGTATGCTCTTTTTTCTATCATCTTACTTCGTTTAAAGAAGAGCTTTTTCAACAGTGTTATCCAGTCTGCATGGAAATCTGAAATGTGTTTTTTCTAGATTATTTTTTGCCGGTTTCAGGTTGTTTACTTTGCCAATTGTTTGACTATTCAATTCGTTTTGAACAGCTATCACGAGAAATAATGAAAATTTCCAAAGAAACCTGACAGTTAGCGATTTTCAATTGAAAACTTTGCTGTTTCAAATTTCCCCCTTTGTGAGATTTACTTTTTTTTTACTTTGAAAGGCTCATGCTCATCAATCACATTTTCAAACTAACCACAAAAGAATTCAGTACATAATGGATACACCCTCGATGTTGATCTTCTCGTTGTCGCCTCGCCGAAACCGTCGTCGGAATCATTTTCCAAGAGAGACATGACTGTCGAGGTCAGCAAACTCGACATTGCCATTCTGAAATTTTTTTGTCTGGAACTATTATTTTAAAGCTTATATAAGGCTGCCATTCGATTGGGAAATGTAGCCGACCGACCGACCGACCGCCGACCCAGCCGTTCGAAATGGATGTCCTAAACTCAATAACAACAAGAAAACAAGGTGTACACAACAAGAAAAAAATACTAGGTTATAGAAAATGAATGGTCAGCAAGTGGTAACCAAAGAGAAGCTGGGGAAAACAGATGACGTGATCTGGAATCAGAATTCAGATGTAGATGGGAAAATTCTCAGGTGTCAAGTGATTCTTTATCATGGGATTATGGGAAAATTGAGGAGGAGTTCTGGATTCGACGTTTTTTTCAATTTCCTGTTGAGTTTTGATTTCCCAGGATTGTGAATTTGGATCAGCATCTGTGGAATTGATGTTTTGGAATAATGGAAAAGAAGTTGATATAGTACTAATGTTCAAAAACAAAGCTTAGACTTTATGACAACAGAGAAACGGTAATTTGCATTTTGCGA</canonical>
            <polymorphic>CTTTTTTTCCCTTTAATTTAAATTTATAAGGATAAAACTGTTGTATGCTCTTTTTTCTATCATCTTACTTCGTTTAAAGAAGAGCTTTTTCAACAGTGTTATCCAGTCTGCATGGAAATCTGAAATGTGTTTTTTCTAGATTATTTTTTGCCGGTTTCAGGTTGTTTACTTTGCCAATTGTTTGACTATTCAATTCGTTTTGAACAGCTATCACGAGAAATAATGAAAATTTCCAAAGAAACCTGACAGTTAGCGATTTTCAATTGAAAACTTTGCTGTTTCAAATTTCCCCCTTTGTGAGATTTACTTTTTTTTTACTTTGAAAGGCTCATGCTCATCAATCACATTTTCAAACTAACCACAAAAGAATTCAGTACATAATGGATACACCCTCGATGTTGATCTTCTCGTTGTCGCCTCGCCGAAACCGTCGTCGGAATCATTTTCCAAGAGAGACATGACTGTCGAGGTCAGCAAACTCGACATTGCCATTCTGAAAYTTTTTTGTCTGGAACTATTATTTTAAAGCTTATATAAGGCTGCCATTCGATTGGGAAATGTAGCCGACCGACCGACCGACCGCCGACCCAGCCGTTCGAAATGGATGTCCTAAACTCAATAACAACAAGAAAACAAGGTGTACACAACAAGAAAAAAATACTAGGTTATAGAAAATGAATGGTCAGCAAGTGGTAACCAAAGAGAAGCTGGGGAAAACAGATGACGTGATCTGGAATCAGAATTCAGATGTAGATGGGAAAATTCTCAGGTGTCAAGTGATTCTTTATCATGGGATTATGGGAAAATTGAGGAGGAGTTCTGGATTCGACGTTTTTTTCAATTTCCTGTTGAGTTTTGATTTCCCAGGATTGTGAATTTGGATCAGCATCTGTGGAATTGATGTTTTGGAATAATGGAAAAGAAGTTGATATAGTACTAATGTTCAAAAACAAAGCTTAGACTTTATGACAACAGAGAAACGGTAATTTGCATTTTGCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>243 207 130 126 114 84 56 20 20</canonical_bands>
                <polymorphic_bands>373 207 126 114 84 56 20 20</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>243 155 130 89 84 44 36 35 35 34 22 21 20 16 16 14 6</canonical_bands>
                <polymorphic_bands>373 155 89 84 44 36 35 35 34 22 21 20 16 16 14 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCATTTTCCAAGAGAGACAT</pcr_primer_p1>
		<pcr_primer_p2>GCTGACCATTCATTTTCTATAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCATTTTCCAAGAGAGACATGACTGTCGAGGTCAGCAAACTCGACATTGCCATTCTGAAATTTTTTTGTCTGGAACTATTATTTTAAAGCTTATATAAGGCTGCCATTCGATTGGGAAATGTAGCCGACCGACCGACCGACCGCCGACCCAGCCGTTCGAAATGGATGTCCTAAACTCAATAACAACAAGAAAACAAGGTGTACACAACAAGAAAAAAATACTAGGTTATAGAAAATGAATGGTCAGC</canonical_amplicon>
		<polymorphic_amplicon>AATCATTTTCCAAGAGAGACATGACTGTCGAGGTCAGCAAACTCGACATTGCCATTCTGAAAYTTTTTTGTCTGGAACTATTATTTTAAAGCTTATATAAGGCTGCCATTCGATTGGGAAATGTAGCCGACCGACCGACCGACCGCCGACCCAGCCGTTCGAAATGGATGTCCTAAACTCAATAACAACAAGAAAACAAGGTGTACACAACAAGAAAAAAATACTAGGTTATAGAAAATGAATGGTCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28191</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>132589</contig_pos>
        <strand></strand>
        <context>TTTGAATAAG[T/C]TTTAACTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCTGAGAACACAAACGTAGTATTGAATCCATCGGAATGCTTTTGAATAAG</left_flank>
        <right_flank>TTTAACTTTGGCTGTAGCGTAGATTAGAGCAATGTTGGAGACTAAAGAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCACGATAACAACACGCTGTGTGAACACTGAACAGTGTACATGATCTCAGAATGCATACCGCAACTCCAAGAAAACTTCTAAACTTTTCCTGTTTCCCCTCCTTTAAGAATCACACCACTTCAAGTTTGCAACAATTTTTCACATAAAAATGACGCTATCTTTTTTCTGGTATTTCCAATTTAATATATTCTCGAGAAATAAACAAAATTAGTGGTCTTAAGTTCATGTTATGTACTTGTCATTTTGTATCCCTCAATTTGTCAAAAAAATCCGAAAACATAAACAACTAACCGGTATTGAAAGGAAGATAGAATCCGCCTTTGACGATGTACAATGACTTCATTTTGGCCACATAAGCAAGTGTCTGAAAATAAAGCAATCAAAAGCTCAAAAGTTCAGAAGGGGACTAACCGGCGATGTCACCACCACAACCATAGAAAATATCAATCTGAGAACACAAACGTAGTATTGAATCCATCGGAATGCTTTTGAATAAGTTTTAACTTTGGCTGTAGCGTAGATTAGAGCAATGTTGGAGACTAAAGAGACGAATCCTGCCACGTAGGCATTCGCTTCATTGACATAAGTTTCATGAAGTTCCGATGGGACCGGAGTGGTGAATGTTGCCATTTTGGGAATTGCTGAAAATGGTTTATTCGATAAGATGATCAAGATGCAGCGCCAAAATTATCACGGTAAGTGTGAAATAGTCAATGGAGACTATTAGAAACCGAAAATTGATGTTTCAAGGTGTTCAGAAATACAATAAAGAAATATGTTGCGATATAGAGAACGTAACTTTTCGCGAATACTGAAAATATTCCAAGTGTGTCCCGGATTTTCGAAAATAGACAACTACGACGTAAGGATTACAAAAAGTCTCTGGTGGATTCTTTTTTATGAATCAGTTATGCTAAAACGGAAAACTTGGAATTTCGGAATTTCCCGCGTTTTCAAATGTCGGAAATTCCGAAAATTCCGAAATGTTAAAATCGGAA</canonical>
            <polymorphic>GCCACGATAACAACACGCTGTGTGAACACTGAACAGTGTACATGATCTCAGAATGCATACCGCAACTCCAAGAAAACTTCTAAACTTTTCCTGTTTCCCCTCCTTTAAGAATCACACCACTTCAAGTTTGCAACAATTTTTCACATAAAAATGACGCTATCTTTTTTCTGGTATTTCCAATTTAATATATTCTCGAGAAATAAACAAAATTAGTGGTCTTAAGTTCATGTTATGTACTTGTCATTTTGTATCCCTCAATTTGTCAAAAAAATCCGAAAACATAAACAACTAACCGGTATTGAAAGGAAGATAGAATCCGCCTTTGACGATGTACAATGACTTCATTTTGGCCACATAAGCAAGTGTCTGAAAATAAAGCAATCAAAAGCTCAAAAGTTCAGAAGGGGACTAACCGGCGATGTCACCACCACAACCATAGAAAATATCAATCTGAGAACACAAACGTAGTATTGAATCCATCGGAATGCTTTTGAATAAGYTTTAACTTTGGCTGTAGCGTAGATTAGAGCAATGTTGGAGACTAAAGAGACGAATCCTGCCACGTAGGCATTCGCTTCATTGACATAAGTTTCATGAAGTTCCGATGGGACCGGAGTGGTGAATGTTGCCATTTTGGGAATTGCTGAAAATGGTTTATTCGATAAGATGATCAAGATGCAGCGCCAAAATTATCACGGTAAGTGTGAAATAGTCAATGGAGACTATTAGAAACCGAAAATTGATGTTTCAAGGTGTTCAGAAATACAATAAAGAAATATGTTGCGATATAGAGAACGTAACTTTTCGCGAATACTGAAAATATTCCAAGTGTGTCCCGGATTTTCGAAAATAGACAACTACGACGTAAGGATTACAAAAAGTCTCTGGTGGATTCTTTTTTATGAATCAGTTATGCTAAAACGGAAAACTTGGAATTTCGGAATTTCCCGCGTTTTCAAATGTCGGAAATTCCGAAAATTCCGAAATGTTAAAATCGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATAAGCAAGTGTCTGAAAATAAA</pcr_primer_p1>
		<pcr_primer_p2>GGAACTTCATGAAACTTATGTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATAAGCAAGTGTCTGAAAATAAAGCAATCAAAAGCTCAAAAGTTCAGAAGGGGACTAACCGGCGATGTCACCACCACAACCATAGAAAATATCAATCTGAGAACACAAACGTAGTATTGAATCCATCGGAATGCTTTTGAATAAGTTTTAACTTTGGCTGTAGCGTAGATTAGAGCAATGTTGGAGACTAAAGAGACGAATCCTGCCACGTAGGCATTCGCTTCATTGACATAAGTTTCATGAAGTTCC</canonical_amplicon>
		<polymorphic_amplicon>CATAAGCAAGTGTCTGAAAATAAAGCAATCAAAAGCTCAAAAGTTCAGAAGGGGACTAACCGGCGATGTCACCACCACAACCATAGAAAATATCAATCTGAGAACACAAACGTAGTATTGAATCCATCGGAATGCTTTTGAATAAGYTTTAACTTTGGCTGTAGCGTAGATTAGAGCAATGTTGGAGACTAAAGAGACGAATCCTGCCACGTAGGCATTCGCTTCATTGACATAAGTTTCATGAAGTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28192</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>132718</contig_pos>
        <strand></strand>
        <context>GTGAATGTTG[C/T]CATTTTGGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGACATAAGTTTCATGAAGTTCCGATGGGACCGGAGTGGTGAATGTTG</left_flank>
        <right_flank>CATTTTGGGAATTGCTGAAAATGGTTTATTCGATAAGATGATCAAGATGC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAACAATTTTTCACATAAAAATGACGCTATCTTTTTTCTGGTATTTCCAATTTAATATATTCTCGAGAAATAAACAAAATTAGTGGTCTTAAGTTCATGTTATGTACTTGTCATTTTGTATCCCTCAATTTGTCAAAAAAATCCGAAAACATAAACAACTAACCGGTATTGAAAGGAAGATAGAATCCGCCTTTGACGATGTACAATGACTTCATTTTGGCCACATAAGCAAGTGTCTGAAAATAAAGCAATCAAAAGCTCAAAAGTTCAGAAGGGGACTAACCGGCGATGTCACCACCACAACCATAGAAAATATCAATCTGAGAACACAAACGTAGTATTGAATCCATCGGAATGCTTTTGAATAAGTTTTAACTTTGGCTGTAGCGTAGATTAGAGCAATGTTGGAGACTAAAGAGACGAATCCTGCCACGTAGGCATTCGCTTCATTGACATAAGTTTCATGAAGTTCCGATGGGACCGGAGTGGTGAATGTTGCCATTTTGGGAATTGCTGAAAATGGTTTATTCGATAAGATGATCAAGATGCAGCGCCAAAATTATCACGGTAAGTGTGAAATAGTCAATGGAGACTATTAGAAACCGAAAATTGATGTTTCAAGGTGTTCAGAAATACAATAAAGAAATATGTTGCGATATAGAGAACGTAACTTTTCGCGAATACTGAAAATATTCCAAGTGTGTCCCGGATTTTCGAAAATAGACAACTACGACGTAAGGATTACAAAAAGTCTCTGGTGGATTCTTTTTTATGAATCAGTTATGCTAAAACGGAAAACTTGGAATTTCGGAATTTCCCGCGTTTTCAAATGTCGGAAATTCCGAAAATTCCGAAATGTTAAAATCGGAATCTCCAAATGATCCGATTTTTTAAAAATCGGATTTTTTCTTTGAAAATCGGAAATTCTCTTAATGATTAATTTGAAAAAAGTTCAATGTTAAAAACCATGATTTGATTTTTCAAAAAATGCAAATTAAT</canonical>
            <polymorphic>GCAACAATTTTTCACATAAAAATGACGCTATCTTTTTTCTGGTATTTCCAATTTAATATATTCTCGAGAAATAAACAAAATTAGTGGTCTTAAGTTCATGTTATGTACTTGTCATTTTGTATCCCTCAATTTGTCAAAAAAATCCGAAAACATAAACAACTAACCGGTATTGAAAGGAAGATAGAATCCGCCTTTGACGATGTACAATGACTTCATTTTGGCCACATAAGCAAGTGTCTGAAAATAAAGCAATCAAAAGCTCAAAAGTTCAGAAGGGGACTAACCGGCGATGTCACCACCACAACCATAGAAAATATCAATCTGAGAACACAAACGTAGTATTGAATCCATCGGAATGCTTTTGAATAAGTTTTAACTTTGGCTGTAGCGTAGATTAGAGCAATGTTGGAGACTAAAGAGACGAATCCTGCCACGTAGGCATTCGCTTCATTGACATAAGTTTCATGAAGTTCCGATGGGACCGGAGTGGTGAATGTTGYCATTTTGGGAATTGCTGAAAATGGTTTATTCGATAAGATGATCAAGATGCAGCGCCAAAATTATCACGGTAAGTGTGAAATAGTCAATGGAGACTATTAGAAACCGAAAATTGATGTTTCAAGGTGTTCAGAAATACAATAAAGAAATATGTTGCGATATAGAGAACGTAACTTTTCGCGAATACTGAAAATATTCCAAGTGTGTCCCGGATTTTCGAAAATAGACAACTACGACGTAAGGATTACAAAAAGTCTCTGGTGGATTCTTTTTTATGAATCAGTTATGCTAAAACGGAAAACTTGGAATTTCGGAATTTCCCGCGTTTTCAAATGTCGGAAATTCCGAAAATTCCGAAATGTTAAAATCGGAATCTCCAAATGATCCGATTTTTTAAAAATCGGATTTTTTCTTTGAAAATCGGAAATTCTCTTAATGATTAATTTGAAAAAAGTTCAATGTTAAAAACCATGATTTGATTTTTCAAAAAATGCAAATTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGATTAGAGCAATGTTGGAGAC</pcr_primer_p1>
		<pcr_primer_p2>ATTGTATTTCTGAACACCTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGATTAGAGCAATGTTGGAGACTAAAGAGACGAATCCTGCCACGTAGGCATTCGCTTCATTGACATAAGTTTCATGAAGTTCCGATGGGACCGGAGTGGTGAATGTTGCCATTTTGGGAATTGCTGAAAATGGTTTATTCGATAAGATGATCAAGATGCAGCGCCAAAATTATCACGGTAAGTGTGAAATAGTCAATGGAGACTATTAGAAACCGAAAATTGATGTTTCAAGGTGTTCAGAAATACAAT</canonical_amplicon>
		<polymorphic_amplicon>TAGATTAGAGCAATGTTGGAGACTAAAGAGACGAATCCTGCCACGTAGGCATTCGCTTCATTGACATAAGTTTCATGAAGTTCCGATGGGACCGGAGTGGTGAATGTTGYCATTTTGGGAATTGCTGAAAATGGTTTATTCGATAAGATGATCAAGATGCAGCGCCAAAATTATCACGGTAAGTGTGAAATAGTCAATGGAGACTATTAGAAACCGAAAATTGATGTTTCAAGGTGTTCAGAAATACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28193</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>132742</contig_pos>
        <strand></strand>
        <context>GCTGAAAATG[G/A]TTTATTCGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGATGGGACCGGAGTGGTGAATGTTGCCATTTTGGGAATTGCTGAAAATG</left_flank>
        <right_flank>TTTATTCGATAAGATGATCAAGATGCAGCGCCAAAATTATCACGGTAAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGCTATCTTTTTTCTGGTATTTCCAATTTAATATATTCTCGAGAAATAAACAAAATTAGTGGTCTTAAGTTCATGTTATGTACTTGTCATTTTGTATCCCTCAATTTGTCAAAAAAATCCGAAAACATAAACAACTAACCGGTATTGAAAGGAAGATAGAATCCGCCTTTGACGATGTACAATGACTTCATTTTGGCCACATAAGCAAGTGTCTGAAAATAAAGCAATCAAAAGCTCAAAAGTTCAGAAGGGGACTAACCGGCGATGTCACCACCACAACCATAGAAAATATCAATCTGAGAACACAAACGTAGTATTGAATCCATCGGAATGCTTTTGAATAAGTTTTAACTTTGGCTGTAGCGTAGATTAGAGCAATGTTGGAGACTAAAGAGACGAATCCTGCCACGTAGGCATTCGCTTCATTGACATAAGTTTCATGAAGTTCCGATGGGACCGGAGTGGTGAATGTTGCCATTTTGGGAATTGCTGAAAATGGTTTATTCGATAAGATGATCAAGATGCAGCGCCAAAATTATCACGGTAAGTGTGAAATAGTCAATGGAGACTATTAGAAACCGAAAATTGATGTTTCAAGGTGTTCAGAAATACAATAAAGAAATATGTTGCGATATAGAGAACGTAACTTTTCGCGAATACTGAAAATATTCCAAGTGTGTCCCGGATTTTCGAAAATAGACAACTACGACGTAAGGATTACAAAAAGTCTCTGGTGGATTCTTTTTTATGAATCAGTTATGCTAAAACGGAAAACTTGGAATTTCGGAATTTCCCGCGTTTTCAAATGTCGGAAATTCCGAAAATTCCGAAATGTTAAAATCGGAATCTCCAAATGATCCGATTTTTTAAAAATCGGATTTTTTCTTTGAAAATCGGAAATTCTCTTAATGATTAATTTGAAAAAAGTTCAATGTTAAAAACCATGATTTGATTTTTCAAAAAATGCAAATTAATGGTACAACTGCAGTAACAATAACA</canonical>
            <polymorphic>ACGCTATCTTTTTTCTGGTATTTCCAATTTAATATATTCTCGAGAAATAAACAAAATTAGTGGTCTTAAGTTCATGTTATGTACTTGTCATTTTGTATCCCTCAATTTGTCAAAAAAATCCGAAAACATAAACAACTAACCGGTATTGAAAGGAAGATAGAATCCGCCTTTGACGATGTACAATGACTTCATTTTGGCCACATAAGCAAGTGTCTGAAAATAAAGCAATCAAAAGCTCAAAAGTTCAGAAGGGGACTAACCGGCGATGTCACCACCACAACCATAGAAAATATCAATCTGAGAACACAAACGTAGTATTGAATCCATCGGAATGCTTTTGAATAAGTTTTAACTTTGGCTGTAGCGTAGATTAGAGCAATGTTGGAGACTAAAGAGACGAATCCTGCCACGTAGGCATTCGCTTCATTGACATAAGTTTCATGAAGTTCCGATGGGACCGGAGTGGTGAATGTTGCCATTTTGGGAATTGCTGAAAATGRTTTATTCGATAAGATGATCAAGATGCAGCGCCAAAATTATCACGGTAAGTGTGAAATAGTCAATGGAGACTATTAGAAACCGAAAATTGATGTTTCAAGGTGTTCAGAAATACAATAAAGAAATATGTTGCGATATAGAGAACGTAACTTTTCGCGAATACTGAAAATATTCCAAGTGTGTCCCGGATTTTCGAAAATAGACAACTACGACGTAAGGATTACAAAAAGTCTCTGGTGGATTCTTTTTTATGAATCAGTTATGCTAAAACGGAAAACTTGGAATTTCGGAATTTCCCGCGTTTTCAAATGTCGGAAATTCCGAAAATTCCGAAATGTTAAAATCGGAATCTCCAAATGATCCGATTTTTTAAAAATCGGATTTTTTCTTTGAAAATCGGAAATTCTCTTAATGATTAATTTGAAAAAAGTTCAATGTTAAAAACCATGATTTGATTTTTCAAAAAATGCAAATTAATGGTACAACTGCAGTAACAATAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGATTAGAGCAATGTTGGAGAC</pcr_primer_p1>
		<pcr_primer_p2>ATTGTATTTCTGAACACCTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGATTAGAGCAATGTTGGAGACTAAAGAGACGAATCCTGCCACGTAGGCATTCGCTTCATTGACATAAGTTTCATGAAGTTCCGATGGGACCGGAGTGGTGAATGTTGCCATTTTGGGAATTGCTGAAAATGGTTTATTCGATAAGATGATCAAGATGCAGCGCCAAAATTATCACGGTAAGTGTGAAATAGTCAATGGAGACTATTAGAAACCGAAAATTGATGTTTCAAGGTGTTCAGAAATACAAT</canonical_amplicon>
		<polymorphic_amplicon>TAGATTAGAGCAATGTTGGAGACTAAAGAGACGAATCCTGCCACGTAGGCATTCGCTTCATTGACATAAGTTTCATGAAGTTCCGATGGGACCGGAGTGGTGAATGTTGCCATTTTGGGAATTGCTGAAAATGRTTTATTCGATAAGATGATCAAGATGCAGCGCCAAAATTATCACGGTAAGTGTGAAATAGTCAATGGAGACTATTAGAAACCGAAAATTGATGTTTCAAGGTGTTCAGAAATACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28194</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>132756</contig_pos>
        <strand></strand>
        <context>ATTCGATAAG[A/G]TGATCAAGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGTGAATGTTGCCATTTTGGGAATTGCTGAAAATGGTTTATTCGATAAG</left_flank>
        <right_flank>TGATCAAGATGCAGCGCCAAAATTATCACGGTAAGTGTGAAATAGTCAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGTATTTCCAATTTAATATATTCTCGAGAAATAAACAAAATTAGTGGTCTTAAGTTCATGTTATGTACTTGTCATTTTGTATCCCTCAATTTGTCAAAAAAATCCGAAAACATAAACAACTAACCGGTATTGAAAGGAAGATAGAATCCGCCTTTGACGATGTACAATGACTTCATTTTGGCCACATAAGCAAGTGTCTGAAAATAAAGCAATCAAAAGCTCAAAAGTTCAGAAGGGGACTAACCGGCGATGTCACCACCACAACCATAGAAAATATCAATCTGAGAACACAAACGTAGTATTGAATCCATCGGAATGCTTTTGAATAAGTTTTAACTTTGGCTGTAGCGTAGATTAGAGCAATGTTGGAGACTAAAGAGACGAATCCTGCCACGTAGGCATTCGCTTCATTGACATAAGTTTCATGAAGTTCCGATGGGACCGGAGTGGTGAATGTTGCCATTTTGGGAATTGCTGAAAATGGTTTATTCGATAAGATGATCAAGATGCAGCGCCAAAATTATCACGGTAAGTGTGAAATAGTCAATGGAGACTATTAGAAACCGAAAATTGATGTTTCAAGGTGTTCAGAAATACAATAAAGAAATATGTTGCGATATAGAGAACGTAACTTTTCGCGAATACTGAAAATATTCCAAGTGTGTCCCGGATTTTCGAAAATAGACAACTACGACGTAAGGATTACAAAAAGTCTCTGGTGGATTCTTTTTTATGAATCAGTTATGCTAAAACGGAAAACTTGGAATTTCGGAATTTCCCGCGTTTTCAAATGTCGGAAATTCCGAAAATTCCGAAATGTTAAAATCGGAATCTCCAAATGATCCGATTTTTTAAAAATCGGATTTTTTCTTTGAAAATCGGAAATTCTCTTAATGATTAATTTGAAAAAAGTTCAATGTTAAAAACCATGATTTGATTTTTCAAAAAATGCAAATTAATGGTACAACTGCAGTAACAATAACATTTTCTGCGAAATT</canonical>
            <polymorphic>CTGGTATTTCCAATTTAATATATTCTCGAGAAATAAACAAAATTAGTGGTCTTAAGTTCATGTTATGTACTTGTCATTTTGTATCCCTCAATTTGTCAAAAAAATCCGAAAACATAAACAACTAACCGGTATTGAAAGGAAGATAGAATCCGCCTTTGACGATGTACAATGACTTCATTTTGGCCACATAAGCAAGTGTCTGAAAATAAAGCAATCAAAAGCTCAAAAGTTCAGAAGGGGACTAACCGGCGATGTCACCACCACAACCATAGAAAATATCAATCTGAGAACACAAACGTAGTATTGAATCCATCGGAATGCTTTTGAATAAGTTTTAACTTTGGCTGTAGCGTAGATTAGAGCAATGTTGGAGACTAAAGAGACGAATCCTGCCACGTAGGCATTCGCTTCATTGACATAAGTTTCATGAAGTTCCGATGGGACCGGAGTGGTGAATGTTGCCATTTTGGGAATTGCTGAAAATGGTTTATTCGATAAGRTGATCAAGATGCAGCGCCAAAATTATCACGGTAAGTGTGAAATAGTCAATGGAGACTATTAGAAACCGAAAATTGATGTTTCAAGGTGTTCAGAAATACAATAAAGAAATATGTTGCGATATAGAGAACGTAACTTTTCGCGAATACTGAAAATATTCCAAGTGTGTCCCGGATTTTCGAAAATAGACAACTACGACGTAAGGATTACAAAAAGTCTCTGGTGGATTCTTTTTTATGAATCAGTTATGCTAAAACGGAAAACTTGGAATTTCGGAATTTCCCGCGTTTTCAAATGTCGGAAATTCCGAAAATTCCGAAATGTTAAAATCGGAATCTCCAAATGATCCGATTTTTTAAAAATCGGATTTTTTCTTTGAAAATCGGAAATTCTCTTAATGATTAATTTGAAAAAAGTTCAATGTTAAAAACCATGATTTGATTTTTCAAAAAATGCAAATTAATGGTACAACTGCAGTAACAATAACATTTTCTGCGAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGATTAGAGCAATGTTGGAGAC</pcr_primer_p1>
		<pcr_primer_p2>ATTGTATTTCTGAACACCTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGATTAGAGCAATGTTGGAGACTAAAGAGACGAATCCTGCCACGTAGGCATTCGCTTCATTGACATAAGTTTCATGAAGTTCCGATGGGACCGGAGTGGTGAATGTTGCCATTTTGGGAATTGCTGAAAATGGTTTATTCGATAAGATGATCAAGATGCAGCGCCAAAATTATCACGGTAAGTGTGAAATAGTCAATGGAGACTATTAGAAACCGAAAATTGATGTTTCAAGGTGTTCAGAAATACAAT</canonical_amplicon>
		<polymorphic_amplicon>TAGATTAGAGCAATGTTGGAGACTAAAGAGACGAATCCTGCCACGTAGGCATTCGCTTCATTGACATAAGTTTCATGAAGTTCCGATGGGACCGGAGTGGTGAATGTTGCCATTTTGGGAATTGCTGAAAATGGTTTATTCGATAAGRTGATCAAGATGCAGCGCCAAAATTATCACGGTAAGTGTGAAATAGTCAATGGAGACTATTAGAAACCGAAAATTGATGTTTCAAGGTGTTCAGAAATACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28195</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>146626</contig_pos>
        <strand>+</strand>
        <context>ATAAAAAAAA[A/T]CACTATTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAAAAAATGATGTTTAAAAATTAAAGATCAAAGAATTAGATAAAAAAAA</left_flank>
        <right_flank>CACTATTTCAAGAACTGGAGATTTGAAAGACATTTATTTCATATATGGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCGTAAAGTGTTCCATCCGGAAAAAAATAAGGAAATCCGAAGGAACTCTGATTTTTATAACAAACAACTGACTAGAGAATACTTGGAAATGCATATTTAGGGGTTTATTGTTTTGAACAAAAATAATCAGCCTTTATTATGATTTCTGATAATTTGATAAAAAGGAACGGATTGAAAAGTAGTATATTGAGAATGGGTATTGATTTTGGTTCTCTGAGTGGCTAATCCAGTATCAAACCTTTGGGTGGGAAATTTTTTGAAGAACCGGGGAGGTTCGGAATGGTCTTTTCGGAACATCGGAATATCGGAATTTCGAAAGTTTGCAATTTTTATGATTTTTGAAAAAAGTTAAGGTGTTGAACTCTTCCTGCCTAGGTAAGTCAGAACTACTCATGAAAAAAGACCTGATTCGGGAGTTCTGAATCATGATGCTCTAGGTGTAACATCTTGAAAAAATGATGTTTAAAAATTAAAGATCAAAGAATTAGATAAAAAAAAACACTATTTCAAGAACTGGAGATTTGAAAGACATTTATTTCATATATGGTTCTAGCGTTTTGAACGAAACCGTTTCTGATTTCAATGAAACTCGAACCATGACCAAATTCGCTAGAAATATTTATTACATCAGGCGTTAGGAATTTTAGGATTTTTTTTTCAGTTTCAAATTTGAGATGCCCAATAGTTAGTTGCAACATATCTCAATTAACTACTATTGGTGATGAGTTGACTTCCTGACTAGGGAACCGGTCCTAGAATGAAAAATATGTATGGAAGTGGTAAATGTGGTTCCAGCCAACGAGTTTCCGTTTCTGTTGAGCAACTTATCACGGATGCTCTGAAATCACAATTTCCAAAAAAAAGAAAAATTGAAATACCTTAATCATACAAATCACCATAATCGGATTGATCGCTGGACACCAAGCAAACATATACGGTAATTTTGAAGATATGTTATTCAGTTCAATGTCAGCAAACGGGAGGATGAATGCAACGTAG</canonical>
            <polymorphic>GTCGTAAAGTGTTCCATCCGGAAAAAAATAAGGAAATCCGAAGGAACTCTGATTTTTATAACAAACAACTGACTAGAGAATACTTGGAAATGCATATTTAGGGGTTTATTGTTTTGAACAAAAATAATCAGCCTTTATTATGATTTCTGATAATTTGATAAAAAGGAACGGATTGAAAAGTAGTATATTGAGAATGGGTATTGATTTTGGTTCTCTGAGTGGCTAATCCAGTATCAAACCTTTGGGTGGGAAATTTTTTGAAGAACCGGGGAGGTTCGGAATGGTCTTTTCGGAACATCGGAATATCGGAATTTCGAAAGTTTGCAATTTTTATGATTTTTGAAAAAAGTTAAGGTGTTGAACTCTTCCTGCCTAGGTAAGTCAGAACTACTCATGAAAAAAGACCTGATTCGGGAGTTCTGAATCATGATGCTCTAGGTGTAACATCTTGAAAAAATGATGTTTAAAAATTAAAGATCAAAGAATTAGATAAAAAAAAWCACTATTTCAAGAACTGGAGATTTGAAAGACATTTATTTCATATATGGTTCTAGCGTTTTGAACGAAACCGTTTCTGATTTCAATGAAACTCGAACCATGACCAAATTCGCTAGAAATATTTATTACATCAGGCGTTAGGAATTTTAGGATTTTTTTTTCAGTTTCAAATTTGAGATGCCCAATAGTTAGTTGCAACATATCTCAATTAACTACTATTGGTGATGAGTTGACTTCCTGACTAGGGAACCGGTCCTAGAATGAAAAATATGTATGGAAGTGGTAAATGTGGTTCCAGCCAACGAGTTTCCGTTTCTGTTGAGCAACTTATCACGGATGCTCTGAAATCACAATTTCCAAAAAAAAGAAAAATTGAAATACCTTAATCATACAAATCACCATAATCGGATTGATCGCTGGACACCAAGCAAACATATACGGTAATTTTGAAGATATGTTATTCAGTTCAATGTCAGCAAACGGGAGGATGAATGCAACGTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCCTAGGTAAGTCAGAACTACTC</pcr_primer_p1>
		<pcr_primer_p2>ATATTTCTAGCGAATTTGGTCAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGCCTAGGTAAGTCAGAACTACTCATGAAAAAAGACCTGATTCGGGAGTTCTGAATCATGATGCTCTAGGTGTAACATCTTGAAAAAATGATGTTTAAAAATTAAAGATCAAAGAATTAGATAAAAAAAAACACTATTTCAAGAACTGGAGATTTGAAAGACATTTATTTCATATATGGTTCTAGCGTTTTGAACGAAACCGTTTCTGATTTCAATGAAACTCGAACCATGACCAAATTCGCTAGAAATAT</canonical_amplicon>
		<polymorphic_amplicon>TGCCTAGGTAAGTCAGAACTACTCATGAAAAAAGACCTGATTCGGGAGTTCTGAATCATGATGCTCTAGGTGTAACATCTTGAAAAAATGATGTTTAAAAATTAAAGATCAAAGAATTAGATAAAAAAAAWCACTATTTCAAGAACTGGAGATTTGAAAGACATTTATTTCATATATGGTTCTAGCGTTTTGAACGAAACCGTTTCTGATTTCAATGAAACTCGAACCATGACCAAATTCGCTAGAAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28196</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>146983</contig_pos>
        <strand>+</strand>
        <context>CACAATTTCC[A/G]AAAAAAAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCGTTTCTGTTGAGCAACTTATCACGGATGCTCTGAAATCACAATTTCC</left_flank>
        <right_flank>AAAAAAAGAAAAATTGAAATACCTTAATCATACAAATCACCATAATCGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAACTCTTCCTGCCTAGGTAAGTCAGAACTACTCATGAAAAAAGACCTGATTCGGGAGTTCTGAATCATGATGCTCTAGGTGTAACATCTTGAAAAAATGATGTTTAAAAATTAAAGATCAAAGAATTAGATAAAAAAAAACACTATTTCAAGAACTGGAGATTTGAAAGACATTTATTTCATATATGGTTCTAGCGTTTTGAACGAAACCGTTTCTGATTTCAATGAAACTCGAACCATGACCAAATTCGCTAGAAATATTTATTACATCAGGCGTTAGGAATTTTAGGATTTTTTTTTCAGTTTCAAATTTGAGATGCCCAATAGTTAGTTGCAACATATCTCAATTAACTACTATTGGTGATGAGTTGACTTCCTGACTAGGGAACCGGTCCTAGAATGAAAAATATGTATGGAAGTGGTAAATGTGGTTCCAGCCAACGAGTTTCCGTTTCTGTTGAGCAACTTATCACGGATGCTCTGAAATCACAATTTCCAAAAAAAAGAAAAATTGAAATACCTTAATCATACAAATCACCATAATCGGATTGATCGCTGGACACCAAGCAAACATATACGGTAATTTTGAAGATATGTTATTCAGTTCAATGTCAGCAAACGGGAGGATGAATGCAACGTAGAAGGGGATGTGAATAGTAATGAACGGGAAGATGAACTGAAAACTTTTAGAATTACAGTTTCAGAAAATCGACAATCATGGAGGAAATGACTTTAGATATTGAGATAGCTACCCAAATTTTAAGTTTACAAAGTTTCCAGAAGGTTTCGAAAGTTGACTCCGAGGTTCTTAAAAAAACGTTTTTTTTTTCAATTTCAGTTTTAAAAAAGTGACAATTAACTTTTAGACAGGGGAGTGACACTAAATCCGATATAATGAGCTTTCCAAACCCCACCTGTACAAATAACAAGAGATTCAATTGCTTCTGTGATTTCTGATTACTAATTGACGTTTTCTTTTTTCTTGATACTTGCATTTT</canonical>
            <polymorphic>TTGAACTCTTCCTGCCTAGGTAAGTCAGAACTACTCATGAAAAAAGACCTGATTCGGGAGTTCTGAATCATGATGCTCTAGGTGTAACATCTTGAAAAAATGATGTTTAAAAATTAAAGATCAAAGAATTAGATAAAAAAAAACACTATTTCAAGAACTGGAGATTTGAAAGACATTTATTTCATATATGGTTCTAGCGTTTTGAACGAAACCGTTTCTGATTTCAATGAAACTCGAACCATGACCAAATTCGCTAGAAATATTTATTACATCAGGCGTTAGGAATTTTAGGATTTTTTTTTCAGTTTCAAATTTGAGATGCCCAATAGTTAGTTGCAACATATCTCAATTAACTACTATTGGTGATGAGTTGACTTCCTGACTAGGGAACCGGTCCTAGAATGAAAAATATGTATGGAAGTGGTAAATGTGGTTCCAGCCAACGAGTTTCCGTTTCTGTTGAGCAACTTATCACGGATGCTCTGAAATCACAATTTCCRAAAAAAAGAAAAATTGAAATACCTTAATCATACAAATCACCATAATCGGATTGATCGCTGGACACCAAGCAAACATATACGGTAATTTTGAAGATATGTTATTCAGTTCAATGTCAGCAAACGGGAGGATGAATGCAACGTAGAAGGGGATGTGAATAGTAATGAACGGGAAGATGAACTGAAAACTTTTAGAATTACAGTTTCAGAAAATCGACAATCATGGAGGAAATGACTTTAGATATTGAGATAGCTACCCAAATTTTAAGTTTACAAAGTTTCCAGAAGGTTTCGAAAGTTGACTCCGAGGTTCTTAAAAAAACGTTTTTTTTTTCAATTTCAGTTTTAAAAAAGTGACAATTAACTTTTAGACAGGGGAGTGACACTAAATCCGATATAATGAGCTTTCCAAACCCCACCTGTACAAATAACAAGAGATTCAATTGCTTCTGTGATTTCTGATTACTAATTGACGTTTTCTTTTTTCTTGATACTTGCATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGATGAGTTGACTTCCTGACTA</pcr_primer_p1>
		<pcr_primer_p2>TTGAACTGAATAACATATCTTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTGATGAGTTGACTTCCTGACTAGGGAACCGGTCCTAGAATGAAAAATATGTATGGAAGTGGTAAATGTGGTTCCAGCCAACGAGTTTCCGTTTCTGTTGAGCAACTTATCACGGATGCTCTGAAATCACAATTTCCAAAAAAAAGAAAAATTGAAATACCTTAATCATACAAATCACCATAATCGGATTGATCGCTGGACACCAAGCAAACATATACGGTAATTTTGAAGATATGTTATTCAGTTCAA</canonical_amplicon>
		<polymorphic_amplicon>GTGATGAGTTGACTTCCTGACTAGGGAACCGGTCCTAGAATGAAAAATATGTATGGAAGTGGTAAATGTGGTTCCAGCCAACGAGTTTCCGTTTCTGTTGAGCAACTTATCACGGATGCTCTGAAATCACAATTTCCRAAAAAAAGAAAAATTGAAATACCTTAATCATACAAATCACCATAATCGGATTGATCGCTGGACACCAAGCAAACATATACGGTAATTTTGAAGATATGTTATTCAGTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28197</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>148105</contig_pos>
        <strand></strand>
        <context>catgatctcc[A/G]gaatgataaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATATCTTATAATTTTCCAAATTCTCGAAGCTCTGAACATCATGATCTCC</left_flank>
        <right_flank>GAATGATAAATTCCGAAATTACAGGAATTCCAAGTTTCAGAATTAAGAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTACTGTTTTCAGAAGTTTTTATTTTCGATGTTTCCGAACAGTGACAATAAAAGTGCTTATTCTACAGTAAACTAAAAGAGGTTCAGCTCCGATGCAACAGTGCCTTCAAAGTTTCCCGGTTTGATTAGTTTCAAGTAGAAAGAAAGATTCGGCTGAACTTCAATGTTTTTCAAAGGTTTTTTGAGTCATAAAGTTTGGACGGAAATTAATTAGACAAGTCAGAATATTTTAAATTTTTCTTAAATCGAGTTTGAAAAATTTCACATTTTGAGATTGTTAATTCAGAAATTTCCAAATTTCTCATTTTCCGAATCTTCAGAAAAATAACTTTAGGAAGTAAGAAATCTGGGAATACGAGATTCTGGGAAATAAGAAATTTGGAAGTGAAGAAATTAGTGAATTCGATAATTCGAATTGTCTGAAATCCAGAATATTACTAACTTCCAAATATCTTATAATTTTCCAAATTCTCGAAGCTCTGAACATCATGATCTCCAGAATGATAAATTCCGAAATTACAGGAATTCCAAGTTTCAGAATTAAGAATTTCATAAACTCTGAATGATTAAGCTATCAATTTTCTTATTTTAGATCCGGAAAACATTTTTTTTAAATGGAAGTTAATAATTGCTCACAATCGATTAAAACTAAATATTTTTTTTCTCTCCGGTTTTGAGATTCGAACATTTTAAGTAAAGCCAGGAGATTGTAGCCGCCGATAGGCGGAAATTGACTGGTTCTACAGTAAATTAATTCAATATCTAGAATTTGCTCACCATTTCCTCGGATTCTATCAGAAAAGCGTTGTTATTCTCTCCTGTTATCTCCTGAATCAAATCCTTTGAAATCTCCTTCTCGTATTCATTAGGCATGTATCCATTAAAAATCAAAATGGAAGTAGGAATCGCTACGAACAATGGAATCAAAGTGATCATTGCCCGTAGTACAGAATGATTTTTCAGGACCGGACTGCAAAAAAAAATTACAAGTAAAGTTA</canonical>
            <polymorphic>TATTACTGTTTTCAGAAGTTTTTATTTTCGATGTTTCCGAACAGTGACAATAAAAGTGCTTATTCTACAGTAAACTAAAAGAGGTTCAGCTCCGATGCAACAGTGCCTTCAAAGTTTCCCGGTTTGATTAGTTTCAAGTAGAAAGAAAGATTCGGCTGAACTTCAATGTTTTTCAAAGGTTTTTTGAGTCATAAAGTTTGGACGGAAATTAATTAGACAAGTCAGAATATTTTAAATTTTTCTTAAATCGAGTTTGAAAAATTTCACATTTTGAGATTGTTAATTCAGAAATTTCCAAATTTCTCATTTTCCGAATCTTCAGAAAAATAACTTTAGGAAGTAAGAAATCTGGGAATACGAGATTCTGGGAAATAAGAAATTTGGAAGTGAAGAAATTAGTGAATTCGATAATTCGAATTGTCTGAAATCCAGAATATTACTAACTTCCAAATATCTTATAATTTTCCAAATTCTCGAAGCTCTGAACATCATGATCTCCRGAATGATAAATTCCGAAATTACAGGAATTCCAAGTTTCAGAATTAAGAATTTCATAAACTCTGAATGATTAAGCTATCAATTTTCTTATTTTAGATCCGGAAAACATTTTTTTTAAATGGAAGTTAATAATTGCTCACAATCGATTAAAACTAAATATTTTTTTTCTCTCCGGTTTTGAGATTCGAACATTTTAAGTAAAGCCAGGAGATTGTAGCCGCCGATAGGCGGAAATTGACTGGTTCTACAGTAAATTAATTCAATATCTAGAATTTGCTCACCATTTCCTCGGATTCTATCAGAAAAGCGTTGTTATTCTCTCCTGTTATCTCCTGAATCAAATCCTTTGAAATCTCCTTCTCGTATTCATTAGGCATGTATCCATTAAAAATCAAAATGGAAGTAGGAATCGCTACGAACAATGGAATCAAAGTGATCATTGCCCGTAGTACAGAATGATTTTTCAGGACCGGACTGCAAAAAAAAATTACAAGTAAAGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAGAATATTACTAACTTCCAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTAATCGATTGTGAGCAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>222</pcr_amplicon_size>
		<canonical_amplicon>TCCAGAATATTACTAACTTCCAAATATCTTATAATTTTCCAAATTCTCGAAGCTCTGAACATCATGATCTCCAGAATGATAAATTCCGAAATTACAGGAATTCCAAGTTTCAGAATTAAGAATTTCATAAACTCTGAATGATTAAGCTATCAATTTTCTTATTTTAGATCCGGAAAACATTTTTTTTAAATGGAAGTTAATAATTGCTCACAATCGATTAAA</canonical_amplicon>
		<polymorphic_amplicon>TCCAGAATATTACTAACTTCCAAATATCTTATAATTTTCCAAATTCTCGAAGCTCTGAACATCATGATCTCCRGAATGATAAATTCCGAAATTACAGGAATTCCAAGTTTCAGAATTAAGAATTTCATAAACTCTGAATGATTAAGCTATCAATTTTCTTATTTTAGATCCGGAAAACATTTTTTTTAAATGGAAGTTAATAATTGCTCACAATCGATTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28198</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>148144</contig_pos>
        <strand></strand>
        <context>tccaagtttc[A/T]gaattaagaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCATGATCTCCAGAATGATAAATTCCGAAATTACAGGAATTCCAAGTTTC</left_flank>
        <right_flank>GAATTAAGAATTTCATAAACTCTGAATGATTAAGCTATCAATTTTCTTAT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAGTGACAATAAAAGTGCTTATTCTACAGTAAACTAAAAGAGGTTCAGCTCCGATGCAACAGTGCCTTCAAAGTTTCCCGGTTTGATTAGTTTCAAGTAGAAAGAAAGATTCGGCTGAACTTCAATGTTTTTCAAAGGTTTTTTGAGTCATAAAGTTTGGACGGAAATTAATTAGACAAGTCAGAATATTTTAAATTTTTCTTAAATCGAGTTTGAAAAATTTCACATTTTGAGATTGTTAATTCAGAAATTTCCAAATTTCTCATTTTCCGAATCTTCAGAAAAATAACTTTAGGAAGTAAGAAATCTGGGAATACGAGATTCTGGGAAATAAGAAATTTGGAAGTGAAGAAATTAGTGAATTCGATAATTCGAATTGTCTGAAATCCAGAATATTACTAACTTCCAAATATCTTATAATTTTCCAAATTCTCGAAGCTCTGAACATCATGATCTCCAGAATGATAAATTCCGAAATTACAGGAATTCCAAGTTTCAGAATTAAGAATTTCATAAACTCTGAATGATTAAGCTATCAATTTTCTTATTTTAGATCCGGAAAACATTTTTTTTAAATGGAAGTTAATAATTGCTCACAATCGATTAAAACTAAATATTTTTTTTCTCTCCGGTTTTGAGATTCGAACATTTTAAGTAAAGCCAGGAGATTGTAGCCGCCGATAGGCGGAAATTGACTGGTTCTACAGTAAATTAATTCAATATCTAGAATTTGCTCACCATTTCCTCGGATTCTATCAGAAAAGCGTTGTTATTCTCTCCTGTTATCTCCTGAATCAAATCCTTTGAAATCTCCTTCTCGTATTCATTAGGCATGTATCCATTAAAAATCAAAATGGAAGTAGGAATCGCTACGAACAATGGAATCAAAGTGATCATTGCCCGTAGTACAGAATGATTTTTCAGGACCGGACTGCAAAAAAAAATTACAAGTAAAGTTATCCGGACAGAACGCTTACCTCGATAATAAATATGTGATT</canonical>
            <polymorphic>AACAGTGACAATAAAAGTGCTTATTCTACAGTAAACTAAAAGAGGTTCAGCTCCGATGCAACAGTGCCTTCAAAGTTTCCCGGTTTGATTAGTTTCAAGTAGAAAGAAAGATTCGGCTGAACTTCAATGTTTTTCAAAGGTTTTTTGAGTCATAAAGTTTGGACGGAAATTAATTAGACAAGTCAGAATATTTTAAATTTTTCTTAAATCGAGTTTGAAAAATTTCACATTTTGAGATTGTTAATTCAGAAATTTCCAAATTTCTCATTTTCCGAATCTTCAGAAAAATAACTTTAGGAAGTAAGAAATCTGGGAATACGAGATTCTGGGAAATAAGAAATTTGGAAGTGAAGAAATTAGTGAATTCGATAATTCGAATTGTCTGAAATCCAGAATATTACTAACTTCCAAATATCTTATAATTTTCCAAATTCTCGAAGCTCTGAACATCATGATCTCCAGAATGATAAATTCCGAAATTACAGGAATTCCAAGTTTCWGAATTAAGAATTTCATAAACTCTGAATGATTAAGCTATCAATTTTCTTATTTTAGATCCGGAAAACATTTTTTTTAAATGGAAGTTAATAATTGCTCACAATCGATTAAAACTAAATATTTTTTTTCTCTCCGGTTTTGAGATTCGAACATTTTAAGTAAAGCCAGGAGATTGTAGCCGCCGATAGGCGGAAATTGACTGGTTCTACAGTAAATTAATTCAATATCTAGAATTTGCTCACCATTTCCTCGGATTCTATCAGAAAAGCGTTGTTATTCTCTCCTGTTATCTCCTGAATCAAATCCTTTGAAATCTCCTTCTCGTATTCATTAGGCATGTATCCATTAAAAATCAAAATGGAAGTAGGAATCGCTACGAACAATGGAATCAAAGTGATCATTGCCCGTAGTACAGAATGATTTTTCAGGACCGGACTGCAAAAAAAAATTACAAGTAAAGTTATCCGGACAGAACGCTTACCTCGATAATAAATATGTGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAGAATATTACTAACTTCCAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTAATCGATTGTGAGCAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>222</pcr_amplicon_size>
		<canonical_amplicon>TCCAGAATATTACTAACTTCCAAATATCTTATAATTTTCCAAATTCTCGAAGCTCTGAACATCATGATCTCCAGAATGATAAATTCCGAAATTACAGGAATTCCAAGTTTCAGAATTAAGAATTTCATAAACTCTGAATGATTAAGCTATCAATTTTCTTATTTTAGATCCGGAAAACATTTTTTTTAAATGGAAGTTAATAATTGCTCACAATCGATTAAA</canonical_amplicon>
		<polymorphic_amplicon>TCCAGAATATTACTAACTTCCAAATATCTTATAATTTTCCAAATTCTCGAAGCTCTGAACATCATGATCTCCAGAATGATAAATTCCGAAATTACAGGAATTCCAAGTTTCWGAATTAAGAATTTCATAAACTCTGAATGATTAAGCTATCAATTTTCTTATTTTAGATCCGGAAAACATTTTTTTTAAATGGAAGTTAATAATTGCTCACAATCGATTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28199</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>160519</contig_pos>
        <strand>+</strand>
        <context>TTGCAGGTTT[A/G]AAGATTGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCTCCATGACTTACAATTGGCCAATATTTCTGTCACTTCTTGCAGGTTT</left_flank>
        <right_flank>AAGATTGAAGTCTGAAATTTTTTGAAAATTAGAAAGTTTAGGTCACGCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTAACAAAAATCAAAACCCTAATATAATTTAGTCTCGGAAAACCTGACAGAAAATGAAACAAAAATTCTGTTTCAATGTCATCAAAAATAACTTTTGAAAATTTAGAAGTTCGTTTTAATTTTTCTTTGTAATTTCAGAAAGTCGATTGTTGCTGTTCCACAGAAGAAGATGGACTCTGGAATATTCCGGAAACAAGACCACTGAATGCTAAAACTGTGAATTTGGCACCGTAAGTTGATCTTTTCTAGAATTCGTGAAATAGAAATTCGTAAAAAAAACTTTGAACTTGGTAGCACACCTCGAAAAGTTCCCCAAATTACACCAATATTCTGAAACTGAAGTCTCCTATTTCCAGATTCACTCGTGATTCTCTTCTCGTCAAAAGTCACTTTGCCTCTTCAATTTTGATTTTCATTCAACACTTTGTCGACTATTCCTTAATGCTTGTCTCCATGACTTACAATTGGCCAATATTTCTGTCACTTCTTGCAGGTTTGAAGATTGAAGTCTGAAATTTTTTGAAAATTAGAAAGTTTAGGTCACGCAACTGGATACTTCTTTCTGGGACCAATGATGACAGTAGAGGAAAGTGAAGCGGCTGGCAGTTGTTGTTCATAATTCATGTTTTCATTTTACTTTTTCATTTTGAATTGAGAACGAACATTCTCATTTAGGTGAACCTACTTTATGGATTTTTTGAAACATTAATGAAAAATGAAAATGATTCATTGAACAAGGCATTGCGAAATTGAATATTTGAGATAGCGCTAGATCTTCAATACTTCAAACTATGAAATTTTTAACTCTGGAATCAGAAACAGCAATAAATCTAATTGCATTTCTAAAACTTATGAACTTAATAAATGTTTATGTGTATCACTGCTGAAAGTCTTTCAGCAGTACACAAACGTAGTGTTCACTAGCTTTGCCTTTTCTCTTCTTGCACCGCCCGTATCCACTTCCTAGGTTAAAAACGACTACGTTAGATTTCCAGTGT</canonical>
            <polymorphic>AACTAACAAAAATCAAAACCCTAATATAATTTAGTCTCGGAAAACCTGACAGAAAATGAAACAAAAATTCTGTTTCAATGTCATCAAAAATAACTTTTGAAAATTTAGAAGTTCGTTTTAATTTTTCTTTGTAATTTCAGAAAGTCGATTGTTGCTGTTCCACAGAAGAAGATGGACTCTGGAATATTCCGGAAACAAGACCACTGAATGCTAAAACTGTGAATTTGGCACCGTAAGTTGATCTTTTCTAGAATTCGTGAAATAGAAATTCGTAAAAAAAACTTTGAACTTGGTAGCACACCTCGAAAAGTTCCCCAAATTACACCAATATTCTGAAACTGAAGTCTCCTATTTCCAGATTCACTCGTGATTCTCTTCTCGTCAAAAGTCACTTTGCCTCTTCAATTTTGATTTTCATTCAACACTTTGTCGACTATTCCTTAATGCTTGTCTCCATGACTTACAATTGGCCAATATTTCTGTCACTTCTTGCAGGTTTRAAGATTGAAGTCTGAAATTTTTTGAAAATTAGAAAGTTTAGGTCACGCAACTGGATACTTCTTTCTGGGACCAATGATGACAGTAGAGGAAAGTGAAGCGGCTGGCAGTTGTTGTTCATAATTCATGTTTTCATTTTACTTTTTCATTTTGAATTGAGAACGAACATTCTCATTTAGGTGAACCTACTTTATGGATTTTTTGAAACATTAATGAAAAATGAAAATGATTCATTGAACAAGGCATTGCGAAATTGAATATTTGAGATAGCGCTAGATCTTCAATACTTCAAACTATGAAATTTTTAACTCTGGAATCAGAAACAGCAATAAATCTAATTGCATTTCTAAAACTTATGAACTTAATAAATGTTTATGTGTATCACTGCTGAAAGTCTTTCAGCAGTACACAAACGTAGTGTTCACTAGCTTTGCCTTTTCTCTTCTTGCACCGCCCGTATCCACTTCCTAGGTTAAAAACGACTACGTTAGATTTCCAGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCTCCTATTTCCAGATTCACT</pcr_primer_p1>
		<pcr_primer_p2>ACTTTCCTCTACTGTCATCATTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGTCTCCTATTTCCAGATTCACTCGTGATTCTCTTCTCGTCAAAAGTCACTTTGCCTCTTCAATTTTGATTTTCATTCAACACTTTGTCGACTATTCCTTAATGCTTGTCTCCATGACTTACAATTGGCCAATATTTCTGTCACTTCTTGCAGGTTTGAAGATTGAAGTCTGAAATTTTTTGAAAATTAGAAAGTTTAGGTCACGCAACTGGATACTTCTTTCTGGGACCAATGATGACAGTAGAGGAAAGT</canonical_amplicon>
		<polymorphic_amplicon>AGTCTCCTATTTCCAGATTCACTCGTGATTCTCTTCTCGTCAAAAGTCACTTTGCCTCTTCAATTTTGATTTTCATTCAACACTTTGTCGACTATTCCTTAATGCTTGTCTCCATGACTTACAATTGGCCAATATTTCTGTCACTTCTTGCAGGTTTRAAGATTGAAGTCTGAAATTTTTTGAAAATTAGAAAGTTTAGGTCACGCAACTGGATACTTCTTTCTGGGACCAATGATGACAGTAGAGGAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28200</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>251373</contig_pos>
        <strand>+</strand>
        <context>AAGCTTAAAA[A/T]TTTGATTAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTATTTTATCTTTTTTCAAAAAATTTAAGCTGCCTTTAACAAGCTTAAAA</left_flank>
        <right_flank>TTTGATTAAGTTCCAGTACCGGCCAATTTTCCATATTTGAAAGATATAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTCACCACAAACTTAAAGCAGATTTTCGATCGGAGTTTGTCAAAACTTCACCTTGCTCCTTCTCATGGTGTGATAAAGTTCCTTGAGGTCCTTACAGTAAACACGGAAAAAAGTATTCTCCACAATTGACCTCATCTAATCAGGCAGAAAAATAATTAGGTAATTTGTCGGGAAAGTTTTAGAGGTTGACTGATGAAGGTGTCTTAATTGTGAAGAGCAGACGGAAAACGCTTCCGGGAAAAAAAATTAACCGGAAGGGATTAAGGGAAAAGGGAACATGGTGTGGTGTACTGTAGAAACGATCGATTGGGAAAATGTGCCATTCGTAAAAAAAGGCTTGCCGATTCTGCGAGAATAATCTTCAAAATGAATTCAGAATGTTTACTTGTATTTTGAAACATGTATTTTTTTTCTTGAAATGATTTGTTTGAAATAACTTTTTTTTTGCTATTTTATCTTTTTTCAAAAAATTTAAGCTGCCTTTAACAAGCTTAAAATTTTGATTAAGTTCCAGTACCGGCCAATTTTCCATATTTGAAAGATATAGTAGGTTTTGGATGGATGAGACTGATCAATTCCAGTTCTCCTACGCAAAATTCTTCATTTGGTGTTTTGGGTTTTTCTACAATTTGAAAAAAAATTCCGCCTGTTTCAGAAATGTCAAAAATAACAAGAAGCTTGTGATTTTAATGATGTGTGGCTGTTTAGCTTTCAAAATAGGTGAAAGTTCAAAAAACTTGGGTGGTACTGTAGCTTCAAATATTCAATGAACCCTCTTCTTTTCCTTTTGGCACTCTCTCGAGACCACCCGGAAAACAGTGTCTATCAATCACCCCTTACTTATTCTGTTTTGCCGTTCCTCTTCCGTTTTGTTTCCAAGAGTGACAGCCGCTTTGAGATGTGACATCGGCGCGCGAATGTCACCTTTTGTGATACAATCTGTTCCCGAGTGAAAGACGAAAAATTAGAGAGCAGAAGACGGCAGAGAAACAAACAGA</canonical>
            <polymorphic>CGTTCACCACAAACTTAAAGCAGATTTTCGATCGGAGTTTGTCAAAACTTCACCTTGCTCCTTCTCATGGTGTGATAAAGTTCCTTGAGGTCCTTACAGTAAACACGGAAAAAAGTATTCTCCACAATTGACCTCATCTAATCAGGCAGAAAAATAATTAGGTAATTTGTCGGGAAAGTTTTAGAGGTTGACTGATGAAGGTGTCTTAATTGTGAAGAGCAGACGGAAAACGCTTCCGGGAAAAAAAATTAACCGGAAGGGATTAAGGGAAAAGGGAACATGGTGTGGTGTACTGTAGAAACGATCGATTGGGAAAATGTGCCATTCGTAAAAAAAGGCTTGCCGATTCTGCGAGAATAATCTTCAAAATGAATTCAGAATGTTTACTTGTATTTTGAAACATGTATTTTTTTTCTTGAAATGATTTGTTTGAAATAACTTTTTTTTTGCTATTTTATCTTTTTTCAAAAAATTTAAGCTGCCTTTAACAAGCTTAAAAWTTTGATTAAGTTCCAGTACCGGCCAATTTTCCATATTTGAAAGATATAGTAGGTTTTGGATGGATGAGACTGATCAATTCCAGTTCTCCTACGCAAAATTCTTCATTTGGTGTTTTGGGTTTTTCTACAATTTGAAAAAAAATTCCGCCTGTTTCAGAAATGTCAAAAATAACAAGAAGCTTGTGATTTTAATGATGTGTGGCTGTTTAGCTTTCAAAATAGGTGAAAGTTCAAAAAACTTGGGTGGTACTGTAGCTTCAAATATTCAATGAACCCTCTTCTTTTCCTTTTGGCACTCTCTCGAGACCACCCGGAAAACAGTGTCTATCAATCACCCCTTACTTATTCTGTTTTGCCGTTCCTCTTCCGTTTTGTTTCCAAGAGTGACAGCCGCTTTGAGATGTGACATCGGCGCGCGAATGTCACCTTTTGTGATACAATCTGTTCCCGAGTGAAAGACGAAAAATTAGAGAGCAGAAGACGGCAGAGAAACAAACAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>371 360 99 99 44 27</canonical_bands>
                <polymorphic_bands>371 360 126 99 44</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>324 125 125 99 51 44 39 36 32 30 27 27 21 12 8</canonical_bands>
                <polymorphic_bands>324 125 125 99 54 51 44 39 36 32 30 21 12 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCAAAATGAATTCAGAATGTT</pcr_primer_p1>
		<pcr_primer_p2>CAAATGAAGAATTTTGCGTAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTTCAAAATGAATTCAGAATGTTTACTTGTATTTTGAAACATGTATTTTTTTTCTTGAAATGATTTGTTTGAAATAACTTTTTTTTTGCTATTTTATCTTTTTTCAAAAAATTTAAGCTGCCTTTAACAAGCTTAAAATTTTGATTAAGTTCCAGTACCGGCCAATTTTCCATATTTGAAAGATATAGTAGGTTTTGGATGGATGAGACTGATCAATTCCAGTTCTCCTACGCAAAATTCTTCATTTG</canonical_amplicon>
		<polymorphic_amplicon>CTTCAAAATGAATTCAGAATGTTTACTTGTATTTTGAAACATGTATTTTTTTTCTTGAAATGATTTGTTTGAAATAACTTTTTTTTTGCTATTTTATCTTTTTTCAAAAAATTTAAGCTGCCTTTAACAAGCTTAAAAWTTTGATTAAGTTCCAGTACCGGCCAATTTTCCATATTTGAAAGATATAGTAGGTTTTGGATGGATGAGACTGATCAATTCCAGTTCTCCTACGCAAAATTCTTCATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28201</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>253235</contig_pos>
        <strand>+</strand>
        <context>TGGAACAGTA[A/G]TTTTTTTGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGATTAGCAGTTCGAACATTAACAAAATATCTAGAACTGCTGGAACAGTA</left_flank>
        <right_flank>TTTTTTTGGAAAAGAAAACGGGATGATGGTGAACATTTTAAAAGGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGAAATAGTCTTTGATTCTAGCTTTCCTAACCCGATATTTTTTCGGAAGGCGATGTAAATGCGCTCGGAGACATAATTTGTATACCGTATCACGTTCTTCTAAACGAGAATACCGAACTGCAAGAGCAACTCTAATGATAACAGTATCCAAAATACATAAATTCCTGGCACTATATCGTTGAAACCGTTAATTTCTCGCTTCACAATTTCCAACATTCACGTGAAACAGCTGCACGACGAGTACGATTGTACGAATTGAAAATTTATTCAGCTGATAAGAGAGCCAACTGACCAAATTACAGTTTCAGCTTCCTTGTACGTGCAAAGAGAGTTTCATTTTCTTTGTTTTCTGAATGTTCTTTGATATAAATAAATTTATAGCAAGAAAAACATAAGCCTAGGAGTTCTTGGTTTGAGATTTTTGTGATGCACTGACATAAGCGGAAGAAGATTAGCAGTTCGAACATTAACAAAATATCTAGAACTGCTGGAACAGTATTTTTTTTGGAAAAGAAAACGGGATGATGGTGAACATTTTAAAAGGAAAAATGTGAAATTTAGATCTTGAAGATGAATGAAGTTTGATCGTTACCACTATCCTATTGCTTTTCCTAAATCTCCCTTATTTTTTTGACAGCTTTCCGAAACAGCAACTTTTTTCCGAAAAAAAAAATCTAAAAATCACCCTTTTCAATCTGATAACCCCTAACACTGTCTTCTCAATCTATCTCTTCAAATCCATTATCAAACACCCACGTAATTGTTGCATTCTTTCTTCGGAACACGAATGATTGTATCAATTCGTCTTTTCCTGCCTCTTCCGCTGCCTCAAATGACCCCACCTTCACTTCTTCTAATTTATCGCTTTTCTGTGTTGTTGTTCTTGTTACTATTCAAAAGTTGTTGTATTTCAGGAAAAAGAGAGAAGAGAAGGTAGTGCGGGTTTTGTTTATTTATGTTCATTTTATTTCCATCCCCCGTTTCTTCTTTTTCTTCTTC</canonical>
            <polymorphic>TCGAAATAGTCTTTGATTCTAGCTTTCCTAACCCGATATTTTTTCGGAAGGCGATGTAAATGCGCTCGGAGACATAATTTGTATACCGTATCACGTTCTTCTAAACGAGAATACCGAACTGCAAGAGCAACTCTAATGATAACAGTATCCAAAATACATAAATTCCTGGCACTATATCGTTGAAACCGTTAATTTCTCGCTTCACAATTTCCAACATTCACGTGAAACAGCTGCACGACGAGTACGATTGTACGAATTGAAAATTTATTCAGCTGATAAGAGAGCCAACTGACCAAATTACAGTTTCAGCTTCCTTGTACGTGCAAAGAGAGTTTCATTTTCTTTGTTTTCTGAATGTTCTTTGATATAAATAAATTTATAGCAAGAAAAACATAAGCCTAGGAGTTCTTGGTTTGAGATTTTTGTGATGCACTGACATAAGCGGAAGAAGATTAGCAGTTCGAACATTAACAAAATATCTAGAACTGCTGGAACAGTARTTTTTTTGGAAAAGAAAACGGGATGATGGTGAACATTTTAAAAGGAAAAATGTGAAATTTAGATCTTGAAGATGAATGAAGTTTGATCGTTACCACTATCCTATTGCTTTTCCTAAATCTCCCTTATTTTTTTGACAGCTTTCCGAAACAGCAACTTTTTTCCGAAAAAAAAAATCTAAAAATCACCCTTTTCAATCTGATAACCCCTAACACTGTCTTCTCAATCTATCTCTTCAAATCCATTATCAAACACCCACGTAATTGTTGCATTCTTTCTTCGGAACACGAATGATTGTATCAATTCGTCTTTTCCTGCCTCTTCCGCTGCCTCAAATGACCCCACCTTCACTTCTTCTAATTTATCGCTTTTCTGTGTTGTTGTTCTTGTTACTATTCAAAAGTTGTTGTATTTCAGGAAAAAGAGAGAAGAGAAGGTAGTGCGGGTTTTGTTTATTTATGTTCATTTTATTTCCATCCCCCGTTTCTTCTTTTTCTTCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACATAAGCCTAGGAGTTC</pcr_primer_p1>
		<pcr_primer_p2>AAAATAAGGGAGATTTAGGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACATAAGCCTAGGAGTTCTTGGTTTGAGATTTTTGTGATGCACTGACATAAGCGGAAGAAGATTAGCAGTTCGAACATTAACAAAATATCTAGAACTGCTGGAACAGTATTTTTTTTGGAAAAGAAAACGGGATGATGGTGAACATTTTAAAAGGAAAAATGTGAAATTTAGATCTTGAAGATGAATGAAGTTTGATCGTTACCACTATCCTATTGCTTTTCCTAAATCTCCCTTATTTT</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACATAAGCCTAGGAGTTCTTGGTTTGAGATTTTTGTGATGCACTGACATAAGCGGAAGAAGATTAGCAGTTCGAACATTAACAAAATATCTAGAACTGCTGGAACAGTARTTTTTTTGGAAAAGAAAACGGGATGATGGTGAACATTTTAAAAGGAAAAATGTGAAATTTAGATCTTGAAGATGAATGAAGTTTGATCGTTACCACTATCCTATTGCTTTTCCTAAATCTCCCTTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28202</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>256118</contig_pos>
        <strand>+</strand>
        <context>TGGGCAGCTC[C/T]TTTTTTTATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTTCTTTTTTCTACTGAATGCGTTTCGATGCTAAGAAAATGGGCAGCTC</left_flank>
        <right_flank>TTTTTTTATGGCTGATGCAATCCTAAAAAATTGCGCGGTCACTCACTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAACAAATTTCGGTTAAATTTCAGTTTCAATTTCTCAAAGGTTGTTTTTATTAATTTTAATCCGGCTTGGTCATCAATGTCACCAGAATTTTCGAAACAGTAATTTTTTGAATTTCTAATTTTTTTCTTTGAAATTACAGTATAATGGAAATATACATTTTGAACTTTCGAAAAATATCCGAGTTCTTTTTTTTGGTATTGCCGAATTTCCTAACTTTTCCTCCCATTCCGTTTTTTTTCTCTCCAATAAAACTGTTATCAGTATCTAAACAAACAAGAACTGACCCCTACCCAACTGTCTGCGCGTCTCATCCCCATACATTTTCTCCCCTGTTTAATATTTTCATCTAATTTCTCTCCGATTTGACCGGAAATATTGTTATTCTTGTCGCTGCCCGTCTTCTACCTAAAAATATTTTCTTATCTCAATCACTTTATCATCATTTCATGTTCTTTTTTCTACTGAATGCGTTTCGATGCTAAGAAAATGGGCAGCTCTTTTTTTTATGGCTGATGCAATCCTAAAAAATTGCGCGGTCACTCACTTTTTTCGTGTTTTTTTGTGTCCTCACACAAATCTCAAAGTCAGCATTTTTCACCTTTTCTGGTCACAAATCCCCCCACTTTTGCTCAGTGTTTTATCATCATTTTTCATCTGTCTCAAGCCCGAATTGTCAGCAATTCTAGCTCATTGAGCTCATTTTCTTCCTCTTTCGCTTCTAAATTCAATTTTATGCTTCCCAAAATTTTATAAATGTCCAGGTAAAAATGACCGCTGAAAATGAGCCGCTGAAATCTAGAGAGCCAGAAGAGCTGGTAAAAAATGGAGACGAAGAAGAAGGAGATGGAAAAGGACTTGCTAAGTCATTGACACTTTTTAATGGGGTCTCAATTATTGTTGGATGTATTATTGGCTCTGGAATTTTTGTATCGCCTACTGGAGTTCAAGAACGTAAGATTATGGAAATTTTAAAAAGTTGAATTTTCAAAGCTGCTAGA</canonical>
            <polymorphic>GAAACAAATTTCGGTTAAATTTCAGTTTCAATTTCTCAAAGGTTGTTTTTATTAATTTTAATCCGGCTTGGTCATCAATGTCACCAGAATTTTCGAAACAGTAATTTTTTGAATTTCTAATTTTTTTCTTTGAAATTACAGTATAATGGAAATATACATTTTGAACTTTCGAAAAATATCCGAGTTCTTTTTTTTGGTATTGCCGAATTTCCTAACTTTTCCTCCCATTCCGTTTTTTTTCTCTCCAATAAAACTGTTATCAGTATCTAAACAAACAAGAACTGACCCCTACCCAACTGTCTGCGCGTCTCATCCCCATACATTTTCTCCCCTGTTTAATATTTTCATCTAATTTCTCTCCGATTTGACCGGAAATATTGTTATTCTTGTCGCTGCCCGTCTTCTACCTAAAAATATTTTCTTATCTCAATCACTTTATCATCATTTCATGTTCTTTTTTCTACTGAATGCGTTTCGATGCTAAGAAAATGGGCAGCTCYTTTTTTTATGGCTGATGCAATCCTAAAAAATTGCGCGGTCACTCACTTTTTTCGTGTTTTTTTGTGTCCTCACACAAATCTCAAAGTCAGCATTTTTCACCTTTTCTGGTCACAAATCCCCCCACTTTTGCTCAGTGTTTTATCATCATTTTTCATCTGTCTCAAGCCCGAATTGTCAGCAATTCTAGCTCATTGAGCTCATTTTCTTCCTCTTTCGCTTCTAAATTCAATTTTATGCTTCCCAAAATTTTATAAATGTCCAGGTAAAAATGACCGCTGAAAATGAGCCGCTGAAATCTAGAGAGCCAGAAGAGCTGGTAAAAAATGGAGACGAAGAAGAAGGAGATGGAAAAGGACTTGCTAAGTCATTGACACTTTTTAATGGGGTCTCAATTATTGTTGGATGTATTATTGGCTCTGGAATTTTTGTATCGCCTACTGGAGTTCAAGAACGTAAGATTATGGAAATTTTAAAAAGTTGAATTTTCAAAGCTGCTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTAATTTCTCTCCGATTTGAC</pcr_primer_p1>
		<pcr_primer_p2>AAATGCTGACTTTGAGATTTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCTAATTTCTCTCCGATTTGACCGGAAATATTGTTATTCTTGTCGCTGCCCGTCTTCTACCTAAAAATATTTTCTTATCTCAATCACTTTATCATCATTTCATGTTCTTTTTTCTACTGAATGCGTTTCGATGCTAAGAAAATGGGCAGCTCTTTTTTTTATGGCTGATGCAATCCTAAAAAATTGCGCGGTCACTCACTTTTTTCGTGTTTTTTTGTGTCCTCACACAAATCTCAAAGTCAGCATTT</canonical_amplicon>
		<polymorphic_amplicon>ATCTAATTTCTCTCCGATTTGACCGGAAATATTGTTATTCTTGTCGCTGCCCGTCTTCTACCTAAAAATATTTTCTTATCTCAATCACTTTATCATCATTTCATGTTCTTTTTTCTACTGAATGCGTTTCGATGCTAAGAAAATGGGCAGCTCYTTTTTTTATGGCTGATGCAATCCTAAAAAATTGCGCGGTCACTCACTTTTTTCGTGTTTTTTTGTGTCCTCACACAAATCTCAAAGTCAGCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28203</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>256175</contig_pos>
        <strand>+</strand>
        <context>TTTTTTCGTG[A/C]TTTTTTGTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATGGCTGATGCAATCCTAAAAAATTGCGCGGTCACTCACTTTTTTCGTG</left_flank>
        <right_flank>TTTTTTGTGTCCTCACACAAATCTCAAAGTCAGCATTTTTCACCTTTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAATCCGGCTTGGTCATCAATGTCACCAGAATTTTCGAAACAGTAATTTTTTGAATTTCTAATTTTTTTCTTTGAAATTACAGTATAATGGAAATATACATTTTGAACTTTCGAAAAATATCCGAGTTCTTTTTTTTGGTATTGCCGAATTTCCTAACTTTTCCTCCCATTCCGTTTTTTTTCTCTCCAATAAAACTGTTATCAGTATCTAAACAAACAAGAACTGACCCCTACCCAACTGTCTGCGCGTCTCATCCCCATACATTTTCTCCCCTGTTTAATATTTTCATCTAATTTCTCTCCGATTTGACCGGAAATATTGTTATTCTTGTCGCTGCCCGTCTTCTACCTAAAAATATTTTCTTATCTCAATCACTTTATCATCATTTCATGTTCTTTTTTCTACTGAATGCGTTTCGATGCTAAGAAAATGGGCAGCTCTTTTTTTTATGGCTGATGCAATCCTAAAAAATTGCGCGGTCACTCACTTTTTTCGTGTTTTTTTGTGTCCTCACACAAATCTCAAAGTCAGCATTTTTCACCTTTTCTGGTCACAAATCCCCCCACTTTTGCTCAGTGTTTTATCATCATTTTTCATCTGTCTCAAGCCCGAATTGTCAGCAATTCTAGCTCATTGAGCTCATTTTCTTCCTCTTTCGCTTCTAAATTCAATTTTATGCTTCCCAAAATTTTATAAATGTCCAGGTAAAAATGACCGCTGAAAATGAGCCGCTGAAATCTAGAGAGCCAGAAGAGCTGGTAAAAAATGGAGACGAAGAAGAAGGAGATGGAAAAGGACTTGCTAAGTCATTGACACTTTTTAATGGGGTCTCAATTATTGTTGGATGTATTATTGGCTCTGGAATTTTTGTATCGCCTACTGGAGTTCAAGAACGTAAGATTATGGAAATTTTAAAAAGTTGAATTTTCAAAGCTGCTAGATTTTCTCTTGTAACCTTTAAAAATGATAATGTGCAGGTCAAATTGTAATTCACGCAA</canonical>
            <polymorphic>TTAATCCGGCTTGGTCATCAATGTCACCAGAATTTTCGAAACAGTAATTTTTTGAATTTCTAATTTTTTTCTTTGAAATTACAGTATAATGGAAATATACATTTTGAACTTTCGAAAAATATCCGAGTTCTTTTTTTTGGTATTGCCGAATTTCCTAACTTTTCCTCCCATTCCGTTTTTTTTCTCTCCAATAAAACTGTTATCAGTATCTAAACAAACAAGAACTGACCCCTACCCAACTGTCTGCGCGTCTCATCCCCATACATTTTCTCCCCTGTTTAATATTTTCATCTAATTTCTCTCCGATTTGACCGGAAATATTGTTATTCTTGTCGCTGCCCGTCTTCTACCTAAAAATATTTTCTTATCTCAATCACTTTATCATCATTTCATGTTCTTTTTTCTACTGAATGCGTTTCGATGCTAAGAAAATGGGCAGCTCTTTTTTTTATGGCTGATGCAATCCTAAAAAATTGCGCGGTCACTCACTTTTTTCGTGMTTTTTTGTGTCCTCACACAAATCTCAAAGTCAGCATTTTTCACCTTTTCTGGTCACAAATCCCCCCACTTTTGCTCAGTGTTTTATCATCATTTTTCATCTGTCTCAAGCCCGAATTGTCAGCAATTCTAGCTCATTGAGCTCATTTTCTTCCTCTTTCGCTTCTAAATTCAATTTTATGCTTCCCAAAATTTTATAAATGTCCAGGTAAAAATGACCGCTGAAAATGAGCCGCTGAAATCTAGAGAGCCAGAAGAGCTGGTAAAAAATGGAGACGAAGAAGAAGGAGATGGAAAAGGACTTGCTAAGTCATTGACACTTTTTAATGGGGTCTCAATTATTGTTGGATGTATTATTGGCTCTGGAATTTTTGTATCGCCTACTGGAGTTCAAGAACGTAAGATTATGGAAATTTTAAAAAGTTGAATTTTCAAAGCTGCTAGATTTTCTCTTGTAACCTTTAAAAATGATAATGTGCAGGTCAAATTGTAATTCACGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCCGTCTTCTACCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATGATAAAACACTGAGCAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCCCGTCTTCTACCTAAAAATATTTTCTTATCTCAATCACTTTATCATCATTTCATGTTCTTTTTTCTACTGAATGCGTTTCGATGCTAAGAAAATGGGCAGCTCTTTTTTTTATGGCTGATGCAATCCTAAAAAATTGCGCGGTCACTCACTTTTTTCGTGTTTTTTTGTGTCCTCACACAAATCTCAAAGTCAGCATTTTTCACCTTTTCTGGTCACAAATCCCCCCACTTTTGCTCAGTGTTTTATCAT</canonical_amplicon>
		<polymorphic_amplicon>GCCCGTCTTCTACCTAAAAATATTTTCTTATCTCAATCACTTTATCATCATTTCATGTTCTTTTTTCTACTGAATGCGTTTCGATGCTAAGAAAATGGGCAGCTCTTTTTTTTATGGCTGATGCAATCCTAAAAAATTGCGCGGTCACTCACTTTTTTCGTGMTTTTTTGTGTCCTCACACAAATCTCAAAGTCAGCATTTTTCACCTTTTCTGGTCACAAATCCCCCCACTTTTGCTCAGTGTTTTATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28204</snp_id>
        <super_contig>c003400863.Contig1</super_contig>
        <contig_pos>259210</contig_pos>
        <strand>+</strand>
        <context>ACTCTACGGA[A/C]GATTCGCTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCTTGAATCACCAGCTGTCGCCGTTCTTTTCGCCAACAAACTCTACGGA</left_flank>
        <right_flank>GATTCGCTTTTATCATGCCACTCTGTGTCGCCTGTTCTACCATCGGATCA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTAGAAAACACACCAGGTGAATTTCAGATCCTTTCTAGACCATTTACCATGGTGACCTAAAAAGATTCACCTAAAACCTAAAAACTCCAATTGCAAAAGTTAGGTCATGATGTTAAAATTACCTAGAAAACACATCAGGGGCATGTTAGACCATTTCTGGACCGTCAGCTAAGATGTCCTAGAAAAACCATCTTGTGAAAATTAGGCCACTCTATTCCTGGTTTACGTAACGCAAATCACAAACTGATAGGGAATATTGAGAAGCTTACATTTTTAAACCTTGGCGCTATCACAGAAACCCAAAGCTTTTTCCCCAACATACCAAATCTTTGAAACCGAAAATTTTCCAGAAATCTCCCTCTTGCCATTGCAATCTCCATCACCACATGTACCGTAATCTACGTGCTCACCAATGTGGCTCTCTACACCGCAATCTCTCCAGATGAGATGCTTGAATCACCAGCTGTCGCCGTTCTTTTCGCCAACAAACTCTACGGAAGATTCGCTTTTATCATGCCACTCTGTGTCGCCTGTTCTACCATCGGATCAGCTAATGGAGTCATTTTCACATCTTCCAGACTTTTCTATTCGGGTGCTCGTGAAGGACAAATGCCGATGGTGTTGACGATGATTAATAAGAATACAAGGACCCCGATTCCAGCCGTTATTTTGACTGGAGCACTTTCGATTGCGTACTTGTTGGCTTCGAAGGATGTCTATCAGTTGATTAATTATATTCAGGTAAGGATAATAAGCTCGTCGAAAAATTAATTGATCAGGAAAAAATCTGCAATAATGGTTTTGTTTAAACAGTATAACTTTTTCAAAATATTTGAAAAATACATTCAAACTTCCAATTTCAGATCAGCTACTGGTTAGCCATTGGAACTGCCATTGCTGCTCTCTTCTGGCTCCGCAAGACCATGCCAGATGCACCAAGACCAATTAAGGTCCCACTTATCTGGCCAATTATCTTCATTTTGGGTTGTGCAGCTCTTG</canonical>
            <polymorphic>CCTAGAAAACACACCAGGTGAATTTCAGATCCTTTCTAGACCATTTACCATGGTGACCTAAAAAGATTCACCTAAAACCTAAAAACTCCAATTGCAAAAGTTAGGTCATGATGTTAAAATTACCTAGAAAACACATCAGGGGCATGTTAGACCATTTCTGGACCGTCAGCTAAGATGTCCTAGAAAAACCATCTTGTGAAAATTAGGCCACTCTATTCCTGGTTTACGTAACGCAAATCACAAACTGATAGGGAATATTGAGAAGCTTACATTTTTAAACCTTGGCGCTATCACAGAAACCCAAAGCTTTTTCCCCAACATACCAAATCTTTGAAACCGAAAATTTTCCAGAAATCTCCCTCTTGCCATTGCAATCTCCATCACCACATGTACCGTAATCTACGTGCTCACCAATGTGGCTCTCTACACCGCAATCTCTCCAGATGAGATGCTTGAATCACCAGCTGTCGCCGTTCTTTTCGCCAACAAACTCTACGGAMGATTCGCTTTTATCATGCCACTCTGTGTCGCCTGTTCTACCATCGGATCAGCTAATGGAGTCATTTTCACATCTTCCAGACTTTTCTATTCGGGTGCTCGTGAAGGACAAATGCCGATGGTGTTGACGATGATTAATAAGAATACAAGGACCCCGATTCCAGCCGTTATTTTGACTGGAGCACTTTCGATTGCGTACTTGTTGGCTTCGAAGGATGTCTATCAGTTGATTAATTATATTCAGGTAAGGATAATAAGCTCGTCGAAAAATTAATTGATCAGGAAAAAATCTGCAATAATGGTTTTGTTTAAACAGTATAACTTTTTCAAAATATTTGAAAAATACATTCAAACTTCCAATTTCAGATCAGCTACTGGTTAGCCATTGGAACTGCCATTGCTGCTCTCTTCTGGCTCCGCAAGACCATGCCAGATGCACCAAGACCAATTAAGGTCCCACTTATCTGGCCAATTATCTTCATTTTGGGTTGTGCAGCTCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAATCTTTGAAACCGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGATGTGAAAATGACTCCATTAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAAATCTTTGAAACCGAAAATTTTCCAGAAATCTCCCTCTTGCCATTGCAATCTCCATCACCACATGTACCGTAATCTACGTGCTCACCAATGTGGCTCTCTACACCGCAATCTCTCCAGATGAGATGCTTGAATCACCAGCTGTCGCCGTTCTTTTCGCCAACAAACTCTACGGAAGATTCGCTTTTATCATGCCACTCTGTGTCGCCTGTTCTACCATCGGATCAGCTAATGGAGTCATTTTCACATCT</canonical_amplicon>
		<polymorphic_amplicon>CAAATCTTTGAAACCGAAAATTTTCCAGAAATCTCCCTCTTGCCATTGCAATCTCCATCACCACATGTACCGTAATCTACGTGCTCACCAATGTGGCTCTCTACACCGCAATCTCTCCAGATGAGATGCTTGAATCACCAGCTGTCGCCGTTCTTTTCGCCAACAAACTCTACGGAMGATTCGCTTTTATCATGCCACTCTGTGTCGCCTGTTCTACCATCGGATCAGCTAATGGAGTCATTTTCACATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28205</snp_id>
        <super_contig>c003400885.Contig1</super_contig>
        <contig_pos>11756</contig_pos>
        <strand>+</strand>
        <context>TGGCTTCTCA[C/T]CGTCCCCTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCCTTCGAGTTTCGTGAATGCTGTGTTCGACATGTGATGTGGCTTCTCA</left_flank>
        <right_flank>CGTCCCCTGGACCTCCGCTCAAGATGAACTCGCTTCTCTCAGAAAGAGGC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTCGTTGATCATCAAAGCCACTGAATTCTCTCCAAACTTCTCGTTATCTCTGGTGTCGTCGTGAACGATCTGGCCATAAGTGTACACGAAATCCACTGAAGGAACCAGAGGATTTCCCCAGTCGGCGATTTCCTCGTTTGTAGCTTGCAGCCGTCTTGCAAACTCCGACATCCTCGTGGATTTTGCTGAAAGTTCCTTATTTTAAACGATTGCCTTTGGAAAAAGAAAACAAACCATCAATCACCATTGACGACTTGTCACCTCCGTAAAAATTGTTCGGGAGTTTCGAGACAATTTTGACTTTATCATCGTGTTTGGCGCCTCCCTTCAATCCTTTATCCTGGAACTTTCTTCCTCGAATCGCACTGACAACGAGACCTGGATCCGATCGCTTCAGGAACTTCTCATTAGCCGGAGAATTTGGGAAAGGCGAGAACTCTAGAAAGTGTCCTTCGAGTTTCGTGAATGCTGTGTTCGACATGTGATGTGGCTTCTCATCGTCCCCTGGACCTCCGCTCAAGATGAACTCGCTTCTCTCAGAAAGAGGCACTCGCCTGAAAATTGAATTAACGAAAATTTCAGCCTCAAAAACATTGAATTTCATACACTGATTTCACAGGTTTTTTCATGGATCTTGGTGTGTTTATAACCTTCTTGGTTTCCGCTTCGAATCTTTCTTCCAGTTTCGCAAGGATATTTCTGTCGATAACTGTCTTTCCATCGTTGTTCATCACAGAAACGATATCATTGCAAATGTCATCGCTCGTTTTGCGAAACGATTTACACAATTCTTCCACTGAAAATAGGACTTGATAATTCATTCGCGAATTTCAAAAATTGGACCTACATTTCTCAACGATTTGTTCGTTATCCGGGCATGTTAGGTTGAATAGTGCGAGTTGGTCGTTGAATTCCTCTAAATCAAACTCGAACGCCATTTTATGTCAAGGAATCGATAAAAATGTGATGAGCCGACAATAAAATCAGCAAACAAAAAC</canonical>
            <polymorphic>TCGTCGTTGATCATCAAAGCCACTGAATTCTCTCCAAACTTCTCGTTATCTCTGGTGTCGTCGTGAACGATCTGGCCATAAGTGTACACGAAATCCACTGAAGGAACCAGAGGATTTCCCCAGTCGGCGATTTCCTCGTTTGTAGCTTGCAGCCGTCTTGCAAACTCCGACATCCTCGTGGATTTTGCTGAAAGTTCCTTATTTTAAACGATTGCCTTTGGAAAAAGAAAACAAACCATCAATCACCATTGACGACTTGTCACCTCCGTAAAAATTGTTCGGGAGTTTCGAGACAATTTTGACTTTATCATCGTGTTTGGCGCCTCCCTTCAATCCTTTATCCTGGAACTTTCTTCCTCGAATCGCACTGACAACGAGACCTGGATCCGATCGCTTCAGGAACTTCTCATTAGCCGGAGAATTTGGGAAAGGCGAGAACTCTAGAAAGTGTCCTTCGAGTTTCGTGAATGCTGTGTTCGACATGTGATGTGGCTTCTCAYCGTCCCCTGGACCTCCGCTCAAGATGAACTCGCTTCTCTCAGAAAGAGGCACTCGCCTGAAAATTGAATTAACGAAAATTTCAGCCTCAAAAACATTGAATTTCATACACTGATTTCACAGGTTTTTTCATGGATCTTGGTGTGTTTATAACCTTCTTGGTTTCCGCTTCGAATCTTTCTTCCAGTTTCGCAAGGATATTTCTGTCGATAACTGTCTTTCCATCGTTGTTCATCACAGAAACGATATCATTGCAAATGTCATCGCTCGTTTTGCGAAACGATTTACACAATTCTTCCACTGAAAATAGGACTTGATAATTCATTCGCGAATTTCAAAAATTGGACCTACATTTCTCAACGATTTGTTCGTTATCCGGGCATGTTAGGTTGAATAGTGCGAGTTGGTCGTTGAATTCCTCTAAATCAAACTCGAACGCCATTTTATGTCAAGGAATCGATAAAAATGTGATGAGCCGACAATAAAATCAGCAAACAAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCTTTATCCTGGAACTTTCT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCGTTAATTCAATTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATCCTTTATCCTGGAACTTTCTTCCTCGAATCGCACTGACAACGAGACCTGGATCCGATCGCTTCAGGAACTTCTCATTAGCCGGAGAATTTGGGAAAGGCGAGAACTCTAGAAAGTGTCCTTCGAGTTTCGTGAATGCTGTGTTCGACATGTGATGTGGCTTCTCATCGTCCCCTGGACCTCCGCTCAAGATGAACTCGCTTCTCTCAGAAAGAGGCACTCGCCTGAAAATTGAATTAACGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATCCTTTATCCTGGAACTTTCTTCCTCGAATCGCACTGACAACGAGACCTGGATCCGATCGCTTCAGGAACTTCTCATTAGCCGGAGAATTTGGGAAAGGCGAGAACTCTAGAAAGTGTCCTTCGAGTTTCGTGAATGCTGTGTTCGACATGTGATGTGGCTTCTCAYCGTCCCCTGGACCTCCGCTCAAGATGAACTCGCTTCTCTCAGAAAGAGGCACTCGCCTGAAAATTGAATTAACGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28206</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>3662</contig_pos>
        <strand>+</strand>
        <context>ACCGTAAACA[C/T]taagcatttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACTGCAAAAATTGCTAAATTGAGCAGCAGTGTTTCATTCACCGTAAACA</left_flank>
        <right_flank>TAAGCATTTTGTCAGTTTATCGTTTTTTTGATAATTTTCACAGGAATCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGCGAACACAGATCTAAAAAATGTTTGAGTTTGGTGTGAAAAGAAGTGTAGTTTTGAAAGTTAGAACTCAAAAATAATCCGTTGCTAATATTTGGATGGAAGTTTTTAACTTTGAAAATTGTGTTTCCGTAAATGCTATTGACAAAATCTGGTCCTATTCGTGCACTTCAAGATCAATTATCTCGGTTCCTATAATAACTTCAAAAACCTGTCAACTGATAAAATATTGAGCATATTATGGCGAATAATTCATCAGTTGACAAATTTTTAACATTTCTCATGGGTATCAAAATAATTGCGCTCATAATGTAGAGAAATGGTGGGCTTCTATCAGAACATACACGATTTCGTGATTCCTAACGTCTGAAATTTCAAAACAATACCAACACAAAAATACTTGCTGAAAATTTAACTTATTTGAATTAGGTTCGTAACTAAGGACCAAGAACTGCAAAAATTGCTAAATTGAGCAGCAGTGTTTCATTCACCGTAAACACTAAGCATTTTGTCAGTTTATCGTTTTTTTGATAATTTTCACAGGAATCGAGATAATAAAGTTCAAGTATACCTCATGTTAGAGTAATTTTTTCCCGGTAATTTGGGACTAATTCTAGGATAATAAAGCGTGAATCACTGCAACGATTTTCTTTTAAAAAGGGAACCTCAGCACCTCACAAACCCAGATTTTGATGACAATTTCAGGGTAAATTAACAATAGGCAAAATTGAAAAAAAAAAATTTTATGAGAAAAGGTTTGGAATATCAAATTTCATCAAAATTAGAGTAAAACACAACAAGTATCATGCTCTGAAACAACCCAGGATTTGAGAAAATCGTCTTTGAAAACGATGCTTTTGCACGGAAACGGCAATTTTTGGTGCTGAAACTGATATAACTCGGCTGAAACTGGCGTGCGGATTTTAAAATTTTCATAGATGTCTAGATAGGCTATCCTCTACCTATCCGAAAATTTTCATCAAAATCTGGGTTTGTGAGG</canonical>
            <polymorphic>TTTTGCGAACACAGATCTAAAAAATGTTTGAGTTTGGTGTGAAAAGAAGTGTAGTTTTGAAAGTTAGAACTCAAAAATAATCCGTTGCTAATATTTGGATGGAAGTTTTTAACTTTGAAAATTGTGTTTCCGTAAATGCTATTGACAAAATCTGGTCCTATTCGTGCACTTCAAGATCAATTATCTCGGTTCCTATAATAACTTCAAAAACCTGTCAACTGATAAAATATTGAGCATATTATGGCGAATAATTCATCAGTTGACAAATTTTTAACATTTCTCATGGGTATCAAAATAATTGCGCTCATAATGTAGAGAAATGGTGGGCTTCTATCAGAACATACACGATTTCGTGATTCCTAACGTCTGAAATTTCAAAACAATACCAACACAAAAATACTTGCTGAAAATTTAACTTATTTGAATTAGGTTCGTAACTAAGGACCAAGAACTGCAAAAATTGCTAAATTGAGCAGCAGTGTTTCATTCACCGTAAACAYTAAGCATTTTGTCAGTTTATCGTTTTTTTGATAATTTTCACAGGAATCGAGATAATAAAGTTCAAGTATACCTCATGTTAGAGTAATTTTTTCCCGGTAATTTGGGACTAATTCTAGGATAATAAAGCGTGAATCACTGCAACGATTTTCTTTTAAAAAGGGAACCTCAGCACCTCACAAACCCAGATTTTGATGACAATTTCAGGGTAAATTAACAATAGGCAAAATTGAAAAAAAAAAATTTTATGAGAAAAGGTTTGGAATATCAAATTTCATCAAAATTAGAGTAAAACACAACAAGTATCATGCTCTGAAACAACCCAGGATTTGAGAAAATCGTCTTTGAAAACGATGCTTTTGCACGGAAACGGCAATTTTTGGTGCTGAAACTGATATAACTCGGCTGAAACTGGCGTGCGGATTTTAAAATTTTCATAGATGTCTAGATAGGCTATCCTCTACCTATCCGAAAATTTTCATCAAAATCTGGGTTTGTGAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>438 334 166 62</canonical_bands>
                <polymorphic_bands>438 334 228</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>157 117 91 90 80 75 68 41 40 36 36 34 28 21 20 11 10 10 9 9 5 5 3 2 2</canonical_bands>
                <polymorphic_bands>157 117 91 90 80 75 68 50 40 36 36 34 28 21 20 11 10 10 9 5 5 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTTCAAAACAATACCAACAC</pcr_primer_p1>
		<pcr_primer_p2>CCTAGAATTAGTCCCAAATTACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATTTCAAAACAATACCAACACAAAAATACTTGCTGAAAATTTAACTTATTTGAATTAGGTTCGTAACTAAGGACCAAGAACTGCAAAAATTGCTAAATTGAGCAGCAGTGTTTCATTCACCGTAAACACTAAGCATTTTGTCAGTTTATCGTTTTTTTGATAATTTTCACAGGAATCGAGATAATAAAGTTCAAGTATACCTCATGTTAGAGTAATTTTTTCCCGGTAATTTGGGACTAATTCTAGG</canonical_amplicon>
		<polymorphic_amplicon>AAATTTCAAAACAATACCAACACAAAAATACTTGCTGAAAATTTAACTTATTTGAATTAGGTTCGTAACTAAGGACCAAGAACTGCAAAAATTGCTAAATTGAGCAGCAGTGTTTCATTCACCGTAAACAYTAAGCATTTTGTCAGTTTATCGTTTTTTTGATAATTTTCACAGGAATCGAGATAATAAAGTTCAAGTATACCTCATGTTAGAGTAATTTTTTCCCGGTAATTTGGGACTAATTCTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28207</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>14915</contig_pos>
        <strand>+</strand>
        <context>ACTTTGCCCA[C/T]GAATTTTCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACGTTTCAAACGGGTGTTTGTTTTTTTGAACTTCTAGAAACTTTGCCCA</left_flank>
        <right_flank>GAATTTTCATTTTTCTGCGTCATAATCGAAACAAAACACGATCTCGAGTT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTGTTTGCGTATTCGCCGTTTTCGTTGCCTTTTTTGTCTCATCCGCTACCTTAAAACTCTAGTCTGCCGAATTTTGACCTTAAAACGTTTTGGTTGTAAACATATTATGCCAGACCAAAAACACTTAGTCAATTCTAGTAACGTCGGCTCCGCCCGAATTCCGTTCAAAAAATCACCGACATCGTTTCGTATATAAATCTCGCTCCCAAACGTTAGTTCAAACACAAAGATCGTATCTGGCAATTAGGTAGAAGACGTTGAGTCGGCTGCCTGTTGTCGTTCTTTCTTTGAGTCTTTTTTCCCAACGAGAAGATCATTGTTTCTGCCGGCCATCTGTCCTCATCACCTCCGACATGACACTTTGCTTCTCCCTCTGCTGTTGCTGCTGATGCGCCTGCGTTTTGTTTAATGACACAATATAGTTTTTGTTTCGAAAACAGCGCGACGAACGTTTCAAACGGGTGTTTGTTTTTTTGAACTTCTAGAAACTTTGCCCATGAATTTTCATTTTTCTGCGTCATAATCGAAACAAAACACGATCTCGAGTTCAGTTCCAAAACACAGCTGAATCTCTTGAAAACAAAATTCGTATGCTTTGGAGCTATGAGTAAATGAATCGACTTCTGTTTTATTTTTAATTCTAAGAGGAAACAATGAACATCAAGGCTCTCGCGCTTTCTTGTTTACAAATTTATCGCATGTTCCTATTTGCCGATTACTGAAACCACCCGATGTGACGTAGTTTCTTTTACCCGACTGGCAACATCTTATCACGTTTTGTTGCAAGAGGAGAGGTATTTTGAACGCTACCTTCCCTCTCTTTGGGTTTGGAGTTTTCGTATTTTTCTCTAAACTTTAATATCATGTAGTTTTTGTCAATTTCACTGATTGACCCCATAGATCAGTTCCAATCTGGAAGCAATCTTCTGGCATTAGGAAGCACTGACATTTACATTTTTGTTGATCGTTTGTAAGGATGAAAGTATTAGTTTGGTTAT</canonical>
            <polymorphic>TCTTGTTTGCGTATTCGCCGTTTTCGTTGCCTTTTTTGTCTCATCCGCTACCTTAAAACTCTAGTCTGCCGAATTTTGACCTTAAAACGTTTTGGTTGTAAACATATTATGCCAGACCAAAAACACTTAGTCAATTCTAGTAACGTCGGCTCCGCCCGAATTCCGTTCAAAAAATCACCGACATCGTTTCGTATATAAATCTCGCTCCCAAACGTTAGTTCAAACACAAAGATCGTATCTGGCAATTAGGTAGAAGACGTTGAGTCGGCTGCCTGTTGTCGTTCTTTCTTTGAGTCTTTTTTCCCAACGAGAAGATCATTGTTTCTGCCGGCCATCTGTCCTCATCACCTCCGACATGACACTTTGCTTCTCCCTCTGCTGTTGCTGCTGATGCGCCTGCGTTTTGTTTAATGACACAATATAGTTTTTGTTTCGAAAACAGCGCGACGAACGTTTCAAACGGGTGTTTGTTTTTTTGAACTTCTAGAAACTTTGCCCAYGAATTTTCATTTTTCTGCGTCATAATCGAAACAAAACACGATCTCGAGTTCAGTTCCAAAACACAGCTGAATCTCTTGAAAACAAAATTCGTATGCTTTGGAGCTATGAGTAAATGAATCGACTTCTGTTTTATTTTTAATTCTAAGAGGAAACAATGAACATCAAGGCTCTCGCGCTTTCTTGTTTACAAATTTATCGCATGTTCCTATTTGCCGATTACTGAAACCACCCGATGTGACGTAGTTTCTTTTACCCGACTGGCAACATCTTATCACGTTTTGTTGCAAGAGGAGAGGTATTTTGAACGCTACCTTCCCTCTCTTTGGGTTTGGAGTTTTCGTATTTTTCTCTAAACTTTAATATCATGTAGTTTTTGTCAATTTCACTGATTGACCCCATAGATCAGTTCCAATCTGGAAGCAATCTTCTGGCATTAGGAAGCACTGACATTTACATTTTTGTTGATCGTTTGTAAGGATGAAAGTATTAGTTTGGTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>355 202 165 143 135</canonical_bands>
                <polymorphic_bands>355 345 165 135</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATGACACTTTGCTTCTCC</pcr_primer_p1>
		<pcr_primer_p2>ATACGAATTTTGTTTTCAAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ACATGACACTTTGCTTCTCCCTCTGCTGTTGCTGCTGATGCGCCTGCGTTTTGTTTAATGACACAATATAGTTTTTGTTTCGAAAACAGCGCGACGAACGTTTCAAACGGGTGTTTGTTTTTTTGAACTTCTAGAAACTTTGCCCATGAATTTTCATTTTTCTGCGTCATAATCGAAACAAAACACGATCTCGAGTTCAGTTCCAAAACACAGCTGAATCTCTTGAAAACAAAATTCGTAT</canonical_amplicon>
		<polymorphic_amplicon>ACATGACACTTTGCTTCTCCCTCTGCTGTTGCTGCTGATGCGCCTGCGTTTTGTTTAATGACACAATATAGTTTTTGTTTCGAAAACAGCGCGACGAACGTTTCAAACGGGTGTTTGTTTTTTTGAACTTCTAGAAACTTTGCCCAYGAATTTTCATTTTTCTGCGTCATAATCGAAACAAAACACGATCTCGAGTTCAGTTCCAAAACACAGCTGAATCTCTTGAAAACAAAATTCGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28208</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>23069</contig_pos>
        <strand>+</strand>
        <context>TAATCCCTAG[G/T]TTTCAACTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGAGTTTGAAAGCGGTTTATGTGCCATTTTGAATAAATTTAATCCCTAG</left_flank>
        <right_flank>TTTCAACTTTTCAGGTCAAAAATGTAATGCCAAACTGCATCGTGGATACA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTGCTTAATGAAATATTTTTTAAGTATTGCAAAATTATTTTCAGCATTACAATATATTCCAAACATGAAGAAGTTCTCTATTGTTGATCGCGTCGAAAGTGAGGCTCTGAAAGTATTGATCGTTGAAATGAGTTATTGGAACCTTGATGAGATCACTTTGGCGTATGTATCCTTTTTTCAAAGTTCTAGTTTTTTTACTAATAATTTTTTTCCAGACTCTCACATCAGCTCATGCGAGAAGACTACGATATGCTGACGTACAACAACCTCTTGCAGAATATTCCGGAAGACGTCAAATCGATCAATCTTTTTTTCTTTCCATTCAACACTGAAAGCCTCGAAGAGATATCAGTCAGTTTGAAAATTTTTAAAATTTTTGAATATCCATATTTCCAGGAACGTGATTCTCTCAAGAAGTTCACTTATTTTCAACATCCACACATTTATAAGAGTTTGAAAGCGGTTTATGTGCCATTTTGAATAAATTTAATCCCTAGGTTTCAACTTTTCAGGTCAAAAATGTAATGCCAAACTGCATCGTGGATACAAGAAAATGGAAAACACCAGTTTCCGGCTGTTTGAAACTTAACGTGATCAGCGAATTTCTCATCAACATCGCGGATTAAATCTTACAAACTCTACAGCATAAAATACGCAAAATCTCTTTGTCAATATATTTTCAAATCTATTGTCATTTTAAAATATTTTAATAAATTATTTCATGATACCCCGTATCCCGTTTTATAGTCCAAAAACTTTGTTTCTTAAAAAGCAATAAAATCATAAAATTTGAAAAGCTCTCAAATGAAGAATATTCTACTAACCAGCAGCTCAACGTAGTTCTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTCATTTTTTTTGATCATTGTTATCAGTGACTATCTGCCAACGTTTCACCAAATTGTGGATGCCTTCCTTCCAGAACTCCGGTCACAGCGAGTTCAAAATCAAGTCAACCCATTTTTGACATCA</canonical>
            <polymorphic>TGTTGCTTAATGAAATATTTTTTAAGTATTGCAAAATTATTTTCAGCATTACAATATATTCCAAACATGAAGAAGTTCTCTATTGTTGATCGCGTCGAAAGTGAGGCTCTGAAAGTATTGATCGTTGAAATGAGTTATTGGAACCTTGATGAGATCACTTTGGCGTATGTATCCTTTTTTCAAAGTTCTAGTTTTTTTACTAATAATTTTTTTCCAGACTCTCACATCAGCTCATGCGAGAAGACTACGATATGCTGACGTACAACAACCTCTTGCAGAATATTCCGGAAGACGTCAAATCGATCAATCTTTTTTTCTTTCCATTCAACACTGAAAGCCTCGAAGAGATATCAGTCAGTTTGAAAATTTTTAAAATTTTTGAATATCCATATTTCCAGGAACGTGATTCTCTCAAGAAGTTCACTTATTTTCAACATCCACACATTTATAAGAGTTTGAAAGCGGTTTATGTGCCATTTTGAATAAATTTAATCCCTAGKTTTCAACTTTTCAGGTCAAAAATGTAATGCCAAACTGCATCGTGGATACAAGAAAATGGAAAACACCAGTTTCCGGCTGTTTGAAACTTAACGTGATCAGCGAATTTCTCATCAACATCGCGGATTAAATCTTACAAACTCTACAGCATAAAATACGCAAAATCTCTTTGTCAATATATTTTCAAATCTATTGTCATTTTAAAATATTTTAATAAATTATTTCATGATACCCCGTATCCCGTTTTATAGTCCAAAAACTTTGTTTCTTAAAAAGCAATAAAATCATAAAATTTGAAAAGCTCTCAAATGAAGAATATTCTACTAACCAGCAGCTCAACGTAGTTCTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTCATTTTTTTTGATCATTGTTATCAGTGACTATCTGCCAACGTTTCACCAAATTGTGGATGCCTTCCTTCCAGAACTCCGGTCACAGCGAGTTCAAAATCAAGTCAACCCATTTTTGACATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCTAGG</site>
                <isoschizomers>
                    <enzyme>AvrII</enzyme>
                    <enzyme>BlnI</enzyme>
                    <enzyme>BspA2I</enzyme>
                    <enzyme>XmaJI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTATTTTCAACATCCACACAT</pcr_primer_p1>
		<pcr_primer_p2>ACAAAGAGATTTTGCGTATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTTATTTTCAACATCCACACATTTATAAGAGTTTGAAAGCGGTTTATGTGCCATTTTGAATAAATTTAATCCCTAGGTTTCAACTTTTCAGGTCAAAAATGTAATGCCAAACTGCATCGTGGATACAAGAAAATGGAAAACACCAGTTTCCGGCTGTTTGAAACTTAACGTGATCAGCGAATTTCTCATCAACATCGCGGATTAAATCTTACAAACTCTACAGCATAAAATACGCAAAATCTCTTTGT</canonical_amplicon>
		<polymorphic_amplicon>ACTTATTTTCAACATCCACACATTTATAAGAGTTTGAAAGCGGTTTATGTGCCATTTTGAATAAATTTAATCCCTAGKTTTCAACTTTTCAGGTCAAAAATGTAATGCCAAACTGCATCGTGGATACAAGAAAATGGAAAACACCAGTTTCCGGCTGTTTGAAACTTAACGTGATCAGCGAATTTCTCATCAACATCGCGGATTAAATCTTACAAACTCTACAGCATAAAATACGCAAAATCTCTTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28209</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>57342</contig_pos>
        <strand>+</strand>
        <context>TTCTTTCTCC[A/T]TCCTTGCGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGAGCATTTTTGTGTTTTGCGGACGTTGCTCCTCACCCCTTCTTTCTCC</left_flank>
        <right_flank>TCCTTGCGTTTGCGCATCAGTCGTCCGCAAGTCCTAAACCCCTCCCTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCGTTTTTTTCCGTGACTGCCCTAGATCGGAGGAGAGAGGATGCTCCGCCCACTCGACTCATTCGCATCCTGGACGTGACCGAAAGGGCACAGAATAGGCGGAGCTGCTTGACTGAAGGGTGGTCCCGTCGTCGCCGTCGACTTCAAACGTCTGTGCTCCACCTCCTTCGTCTTCTACCCCTGTCGTTTTATACTTTTCTTCTTTCTGTGCATTCATGAACAGATAATCCAATTTGAGGCTGAGGCCTTTGCCGCGTGTATCTGCTTGTATGTCTGTGTGTATGTGTATGTGGAAGCCCGCCAACGAAGCAAGAACAAAACATGGCAATCTTGAGCATATTGGATAAGCTGCCCGCTGAGTTGCTAATTGTCAACGTTTGGCACAAACGGACCGAGCCATCTTGGGAAGGAAAAAGGGAAAGACTGGTTGCGAAAGAAAAGAAGGGTAGAGCATTTTTGTGTTTTGCGGACGTTGCTCCTCACCCCTTCTTTCTCCTTCCTTGCGTTTGCGCATCAGTCGTCCGCAAGTCCTAAACCCCTCCCTTCTACTCCCATCTACACACATCCATTTATTTATTAGAAGAGCTCTGAGTAAAACATGAACTATTCGCTATCCATGTCCTTGTTTTATTCATTGCTTATATCGCATTCGGCTGGTTTTTCCTCCTGTCGCGCATGCCTTGTTTTCTTCATCTTTTTCTTTTTTTTTCTACTCCTTCCCGGTTTTCTCTTTCTTTTTCTACCCCTCCTCCTTTTTTTCCGTACGTAGCATGAGGAGGGTCCCTATCTTTTCTAGACCTTGTCTTTTTTATTTCATACTAGCTTGTGGAAACAAAAATGAATTCATTGTCTCAAAATTAATGTGTTTCTTCTCGACACAGTCGTTAATCTTGCATCGAATTTCGAATTTCACATTTACCTTTGTCTCTCTTCAACATCTGGCGTTGTCCAGATGTTGTCAAGCCAAACACCAGCATGAATCCTTTACCTGTCGTCC</canonical>
            <polymorphic>TCTTCGTTTTTTTCCGTGACTGCCCTAGATCGGAGGAGAGAGGATGCTCCGCCCACTCGACTCATTCGCATCCTGGACGTGACCGAAAGGGCACAGAATAGGCGGAGCTGCTTGACTGAAGGGTGGTCCCGTCGTCGCCGTCGACTTCAAACGTCTGTGCTCCACCTCCTTCGTCTTCTACCCCTGTCGTTTTATACTTTTCTTCTTTCTGTGCATTCATGAACAGATAATCCAATTTGAGGCTGAGGCCTTTGCCGCGTGTATCTGCTTGTATGTCTGTGTGTATGTGTATGTGGAAGCCCGCCAACGAAGCAAGAACAAAACATGGCAATCTTGAGCATATTGGATAAGCTGCCCGCTGAGTTGCTAATTGTCAACGTTTGGCACAAACGGACCGAGCCATCTTGGGAAGGAAAAAGGGAAAGACTGGTTGCGAAAGAAAAGAAGGGTAGAGCATTTTTGTGTTTTGCGGACGTTGCTCCTCACCCCTTCTTTCTCCWTCCTTGCGTTTGCGCATCAGTCGTCCGCAAGTCCTAAACCCCTCCCTTCTACTCCCATCTACACACATCCATTTATTTATTAGAAGAGCTCTGAGTAAAACATGAACTATTCGCTATCCATGTCCTTGTTTTATTCATTGCTTATATCGCATTCGGCTGGTTTTTCCTCCTGTCGCGCATGCCTTGTTTTCTTCATCTTTTTCTTTTTTTTTCTACTCCTTCCCGGTTTTCTCTTTCTTTTTCTACCCCTCCTCCTTTTTTTCCGTACGTAGCATGAGGAGGGTCCCTATCTTTTCTAGACCTTGTCTTTTTTATTTCATACTAGCTTGTGGAAACAAAAATGAATTCATTGTCTCAAAATTAATGTGTTTCTTCTCGACACAGTCGTTAATCTTGCATCGAATTTCGAATTTCACATTTACCTTTGTCTCTCTTCAACATCTGGCGTTGTCCAGATGTTGTCAAGCCAAACACCAGCATGAATCCTTTACCTGTCGTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATCTTGAGCATATTGGATAAG</pcr_primer_p1>
		<pcr_primer_p2>ATGTGTGTAGATGGGAGTAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CAATCTTGAGCATATTGGATAAGCTGCCCGCTGAGTTGCTAATTGTCAACGTTTGGCACAAACGGACCGAGCCATCTTGGGAAGGAAAAAGGGAAAGACTGGTTGCGAAAGAAAAGAAGGGTAGAGCATTTTTGTGTTTTGCGGACGTTGCTCCTCACCCCTTCTTTCTCCTTCCTTGCGTTTGCGCATCAGTCGTCCGCAAGTCCTAAACCCCTCCCTTCTACTCCCATCTACACACAT</canonical_amplicon>
		<polymorphic_amplicon>CAATCTTGAGCATATTGGATAAGCTGCCCGCTGAGTTGCTAATTGTCAACGTTTGGCACAAACGGACCGAGCCATCTTGGGAAGGAAAAAGGGAAAGACTGGTTGCGAAAGAAAAGAAGGGTAGAGCATTTTTGTGTTTTGCGGACGTTGCTCCTCACCCCTTCTTTCTCCWTCCTTGCGTTTGCGCATCAGTCGTCCGCAAGTCCTAAACCCCTCCCTTCTACTCCCATCTACACACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28210</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>83737</contig_pos>
        <strand>+</strand>
        <context>ATTCCTTTCA[A/G]CGATTGGAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATAATAGAACGAAAAAACAGAAAGCATGGGACGGATTGAATTCCTTTCA</left_flank>
        <right_flank>CGATTGGAAGAGGCTTGTTTTGGAAAGCAGACAGACGGCGAGTCAAGGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGAAATAGCTAAACATTTTTTTAAGCCATTCTTCGAAATATTTTTCTTGCGAATATCTAATTTAATGAGATTCTTACTACTCAAATTGTTTATCATATAGACAAAATTTATAAAAATAATACTTTTGTTTTTTTTTCCCGTTCACGTCCAAAACAGTGAGGAACTGATTCCCTCCAATTATTGTGTATCTCAATAACATATTATTCTTATTCTCACTATAAGAATTATACTGTTTTTCATGGCAATACCAAGAAAATTCAAATTAAGTGCAAATTAGCAGAAATCATTGGGAGACATAAAACGAAAGAAAGCGAGACACACACTGTGCAGACAGAACATTTTGTTTGGGCAGTGTCGCAAAAAAAGAAGTTGTGTCATTCTTTCTACTTAAAGCTACAGTATGCAACAACATCGTATAAAATTGTGTATGCGTCCAGGGAAGAAATATATAATAGAACGAAAAAACAGAAAGCATGGGACGGATTGAATTCCTTTCAACGATTGGAAGAGGCTTGTTTTGGAAAGCAGACAGACGGCGAGTCAAGGCTATAGGAGAGAGGAAAAACGAACATTGTTTGCTGATCGAGTGGATGGGAGAAGCGGCAAATCACCAGGCTTTCTTTTTTGATTATTTTCTGATCATTTTCTCAATACGATTAGAAATGTAAAAGAGAGATACTCTGTTTCGTTATAAGCTCCGCAAATTTTTCGCTGCACTGAAGCACATTAGGCAGCTCAGAGCTTTTACACTTTAGTAGCACCAGTACTAATGGGAAATGACCCATTTAACCCGGAACTACAGCTAGAAACCTGCACTTGGTCTCTCTTTTATTTTTCTCACTGAATTCAAAACTGAAAAAGAAACCAGCTGCCGCGAAGTACATGACCACTTTCTCAAAAATCTGAAATACATTAATAGGATTTGGAAAATGTGTGAAGATGAAAGGAGACACCATTTCCTGAATTGGAAAAGAGGAGAGAAAAATAATATTGCACAC</canonical>
            <polymorphic>AAAGAAATAGCTAAACATTTTTTTAAGCCATTCTTCGAAATATTTTTCTTGCGAATATCTAATTTAATGAGATTCTTACTACTCAAATTGTTTATCATATAGACAAAATTTATAAAAATAATACTTTTGTTTTTTTTTCCCGTTCACGTCCAAAACAGTGAGGAACTGATTCCCTCCAATTATTGTGTATCTCAATAACATATTATTCTTATTCTCACTATAAGAATTATACTGTTTTTCATGGCAATACCAAGAAAATTCAAATTAAGTGCAAATTAGCAGAAATCATTGGGAGACATAAAACGAAAGAAAGCGAGACACACACTGTGCAGACAGAACATTTTGTTTGGGCAGTGTCGCAAAAAAAGAAGTTGTGTCATTCTTTCTACTTAAAGCTACAGTATGCAACAACATCGTATAAAATTGTGTATGCGTCCAGGGAAGAAATATATAATAGAACGAAAAAACAGAAAGCATGGGACGGATTGAATTCCTTTCARCGATTGGAAGAGGCTTGTTTTGGAAAGCAGACAGACGGCGAGTCAAGGCTATAGGAGAGAGGAAAAACGAACATTGTTTGCTGATCGAGTGGATGGGAGAAGCGGCAAATCACCAGGCTTTCTTTTTTGATTATTTTCTGATCATTTTCTCAATACGATTAGAAATGTAAAAGAGAGATACTCTGTTTCGTTATAAGCTCCGCAAATTTTTCGCTGCACTGAAGCACATTAGGCAGCTCAGAGCTTTTACACTTTAGTAGCACCAGTACTAATGGGAAATGACCCATTTAACCCGGAACTACAGCTAGAAACCTGCACTTGGTCTCTCTTTTATTTTTCTCACTGAATTCAAAACTGAAAAAGAAACCAGCTGCCGCGAAGTACATGACCACTTTCTCAAAAATCTGAAATACATTAATAGGATTTGGAAAATGTGTGAAGATGAAAGGAGACACCATTTCCTGAATTGGAAAAGAGGAGAGAAAAATAATATTGCACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTATGCAACAACATCGTATAA</pcr_primer_p1>
		<pcr_primer_p2>GAAAATGATCAGAAAATAATCAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAGTATGCAACAACATCGTATAAAATTGTGTATGCGTCCAGGGAAGAAATATATAATAGAACGAAAAAACAGAAAGCATGGGACGGATTGAATTCCTTTCAACGATTGGAAGAGGCTTGTTTTGGAAAGCAGACAGACGGCGAGTCAAGGCTATAGGAGAGAGGAAAAACGAACATTGTTTGCTGATCGAGTGGATGGGAGAAGCGGCAAATCACCAGGCTTTCTTTTTTGATTATTTTCTGATCATTTTC</canonical_amplicon>
		<polymorphic_amplicon>CAGTATGCAACAACATCGTATAAAATTGTGTATGCGTCCAGGGAAGAAATATATAATAGAACGAAAAAACAGAAAGCATGGGACGGATTGAATTCCTTTCARCGATTGGAAGAGGCTTGTTTTGGAAAGCAGACAGACGGCGAGTCAAGGCTATAGGAGAGAGGAAAAACGAACATTGTTTGCTGATCGAGTGGATGGGAGAAGCGGCAAATCACCAGGCTTTCTTTTTTGATTATTTTCTGATCATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28211</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>121851</contig_pos>
        <strand></strand>
        <context>GTTTCGAAAA[G/A]CAATGAATTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CACGATTACGCGAAAAAAAAATCTGCAAAAAATCGTCCGGGTTTCGAAAA</left_flank>
        <right_flank>CAATGAATTGAAAATGAATGCCTGGGAAGCAAAATTACCGTAACACTCTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGATAGAGGGTAAACTGTGTAAAGCATGTTCGGCAAAGAAAGATGGATGCCGACGCGAGAGTAGGAACAGATGGCATTTGACGACAATGAAATAGCAGATGGCACGATGAGAGTCTTTTGAACCTCGTCCTTCATCCGGCTACCACTTTCTTCTCAGTTTCACAACACGTTTTTCTGCTCCGAGAAAACTTTCCGGATGAAAAAAAACAGAAGAAAACGAAAAATAAGCTGTTGTGTAATATCGTGTGTATGTGCCACCGAGCATTTTGTGTCAAGAGTTGAGTAAAAACAAAAAGTGAAAGGAGAGAATGAATTACCCACTGGCGTGTGTCAATTGTCACTGGTCAAAGAACTAATACAACAGGAAATGAAACCTGTAAACAAGTTGGGAACGTTGGTTACTGAGAAAACAACAGGAAACTGATGGATTGGTCCACAGCTTCTGGACCACGATTACGCGAAAAAAAAATCTGCAAAAAATCGTCCGGGTTTCGAAAAGCAATGAATTGAAAATGAATGCCTGGGAAGCAAAATTACCGTAACACTCTGATTGAACGACATCTCTGATTTTTAACTTTTAGCCACTTTATCTCGTTTTCTGTGAAAGATATGAAAGTTGTATCAACTGATAAATTATTTATCATAAAGTCACTAATATTTTGTCAATTGACAAATTTTGATATCTTGCACACAAATTAAGATAACTGAATTCAAAGATGCCTGCGTGGGCGAGCTTCTATTACAGATAATACGGTATTAGAAAAACAAAGAATTACATATCTGGCTTTTGGAGTTTTTGTATGGTTTTACACAGGTTGCGTTTAAAAGAGATTCATTGTGCATGATAAAGTTTTTAATGATTAGGAACTAAATTACGAGAAATTTGATTGTTTCTGTTTTTCGGGAAACAAGGATTACTCTACCTCTGTTTATTGATATTCTTGTCTTTCATTTGCTTTGGCTTTGAATTTTTCTAAGTTGGCTTCTCACTCTACTAGT</canonical>
            <polymorphic>GAGATAGAGGGTAAACTGTGTAAAGCATGTTCGGCAAAGAAAGATGGATGCCGACGCGAGAGTAGGAACAGATGGCATTTGACGACAATGAAATAGCAGATGGCACGATGAGAGTCTTTTGAACCTCGTCCTTCATCCGGCTACCACTTTCTTCTCAGTTTCACAACACGTTTTTCTGCTCCGAGAAAACTTTCCGGATGAAAAAAAACAGAAGAAAACGAAAAATAAGCTGTTGTGTAATATCGTGTGTATGTGCCACCGAGCATTTTGTGTCAAGAGTTGAGTAAAAACAAAAAGTGAAAGGAGAGAATGAATTACCCACTGGCGTGTGTCAATTGTCACTGGTCAAAGAACTAATACAACAGGAAATGAAACCTGTAAACAAGTTGGGAACGTTGGTTACTGAGAAAACAACAGGAAACTGATGGATTGGTCCACAGCTTCTGGACCACGATTACGCGAAAAAAAAATCTGCAAAAAATCGTCCGGGTTTCGAAAARCAATGAATTGAAAATGAATGCCTGGGAAGCAAAATTACCGTAACACTCTGATTGAACGACATCTCTGATTTTTAACTTTTAGCCACTTTATCTCGTTTTCTGTGAAAGATATGAAAGTTGTATCAACTGATAAATTATTTATCATAAAGTCACTAATATTTTGTCAATTGACAAATTTTGATATCTTGCACACAAATTAAGATAACTGAATTCAAAGATGCCTGCGTGGGCGAGCTTCTATTACAGATAATACGGTATTAGAAAAACAAAGAATTACATATCTGGCTTTTGGAGTTTTTGTATGGTTTTACACAGGTTGCGTTTAAAAGAGATTCATTGTGCATGATAAAGTTTTTAATGATTAGGAACTAAATTACGAGAAATTTGATTGTTTCTGTTTTTCGGGAAACAAGGATTACTCTACCTCTGTTTATTGATATTCTTGTCTTTCATTTGCTTTGGCTTTGAATTTTTCTAAGTTGGCTTCTCACTCTACTAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAGGAAACTGATGGATTG</pcr_primer_p1>
		<pcr_primer_p2>GCCAGATATGTAATTCTTTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>374</pcr_amplicon_size>
		<canonical_amplicon>AACAGGAAACTGATGGATTGGTCCACAGCTTCTGGACCACGATTACGCGAAAAAAAAATCTGCAAAAAATCGTCCGGGTTTCGAAAAGCAATGAATTGAAAATGAATGCCTGGGAAGCAAAATTACCGTAACACTCTGATTGAACGACATCTCTGATTTTTAACTTTTAGCCACTTTATCTCGTTTTCTGTGAAAGATATGAAAGTTGTATCAACTGATAAATTATTTATCATAAAGTCACTAATATTTTGTCAATTGACAAATTTTGATATCTTGCACACAAATTAAGATAACTGAATTCAAAGATGCCTGCGTGGGCGAGCTTCTATTACAGATAATACGGTATTAGAAAAACAAAGAATTACATATCTGGC</canonical_amplicon>
		<polymorphic_amplicon>AACAGGAAACTGATGGATTGGTCCACAGCTTCTGGACCACGATTACGCGAAAAAAAAATCTGCAAAAAATCGTCCGGGTTTCGAAAARCAATGAATTGAAAATGAATGCCTGGGAAGCAAAATTACCGTAACACTCTGATTGAACGACATCTCTGATTTTTAACTTTTAGCCACTTTATCTCGTTTTCTGTGAAAGATATGAAAGTTGTATCAACTGATAAATTATTTATCATAAAGTCACTAATATTTTGTCAATTGACAAATTTTGATATCTTGCACACAAATTAAGATAACTGAATTCAAAGATGCCTGCGTGGGCGAGCTTCTATTACAGATAATACGGTATTAGAAAAACAAAGAATTACATATCTGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28212</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>122394</contig_pos>
        <strand></strand>
        <context>CACCACCTAA[C/G]GAAGCCATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTACTAGTCTTTGCATTCTAACTAATCAAAGTTTTGTTGCCACCACCTAA</left_flank>
        <right_flank>GAAGCCATTCGATTTACTAAAATTTATATTTTGGATAGCAGCTCAAAATC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTCTGATTGAACGACATCTCTGATTTTTAACTTTTAGCCACTTTATCTCGTTTTCTGTGAAAGATATGAAAGTTGTATCAACTGATAAATTATTTATCATAAAGTCACTAATATTTTGTCAATTGACAAATTTTGATATCTTGCACACAAATTAAGATAACTGAATTCAAAGATGCCTGCGTGGGCGAGCTTCTATTACAGATAATACGGTATTAGAAAAACAAAGAATTACATATCTGGCTTTTGGAGTTTTTGTATGGTTTTACACAGGTTGCGTTTAAAAGAGATTCATTGTGCATGATAAAGTTTTTAATGATTAGGAACTAAATTACGAGAAATTTGATTGTTTCTGTTTTTCGGGAAACAAGGATTACTCTACCTCTGTTTATTGATATTCTTGTCTTTCATTTGCTTTGGCTTTGAATTTTTCTAAGTTGGCTTCTCACTCTACTAGTCTTTGCATTCTAACTAATCAAAGTTTTGTTGCCACCACCTAACGAAGCCATTCGATTTACTAAAATTTATATTTTGGATAGCAGCTCAAAATCTTGGATTTAGATTTCCAAAAGCTTCTTCTCAGTGCTGTATAGAAGATAATCCCCACCCTATTCTACATATATTGATAGGCAGCACCACTTCGTGCCATTAGTTGTCACGACAACAGACAGCTAAATTCTATTCAGAAAATTTATGAATAGATGTATTATGCCTCCTGTGAAATTAGATTAATTTTATTTTTCGACTAGTCAGACGGACGCCTCAAAATATTTTCTGATTTTTTGAACATTTTCTCATGAATCTGTATTTTCCGATAATACGAATAACAAAACATGTGTCATGGACAGCGTTTGTTATTTCTTATAAAACAATCGTCATTTGACAAAGCTATTTGTGTTTATCCTTTGGCACATTAGGATACCGTACACTTTTCATAATTCTCATCCACAAATATCGCGTCTTTTATCTCCCTCTTGCCACATTGGTTCAAGTAGATTCTC</canonical>
            <polymorphic>CACTCTGATTGAACGACATCTCTGATTTTTAACTTTTAGCCACTTTATCTCGTTTTCTGTGAAAGATATGAAAGTTGTATCAACTGATAAATTATTTATCATAAAGTCACTAATATTTTGTCAATTGACAAATTTTGATATCTTGCACACAAATTAAGATAACTGAATTCAAAGATGCCTGCGTGGGCGAGCTTCTATTACAGATAATACGGTATTAGAAAAACAAAGAATTACATATCTGGCTTTTGGAGTTTTTGTATGGTTTTACACAGGTTGCGTTTAAAAGAGATTCATTGTGCATGATAAAGTTTTTAATGATTAGGAACTAAATTACGAGAAATTTGATTGTTTCTGTTTTTCGGGAAACAAGGATTACTCTACCTCTGTTTATTGATATTCTTGTCTTTCATTTGCTTTGGCTTTGAATTTTTCTAAGTTGGCTTCTCACTCTACTAGTCTTTGCATTCTAACTAATCAAAGTTTTGTTGCCACCACCTAASGAAGCCATTCGATTTACTAAAATTTATATTTTGGATAGCAGCTCAAAATCTTGGATTTAGATTTCCAAAAGCTTCTTCTCAGTGCTGTATAGAAGATAATCCCCACCCTATTCTACATATATTGATAGGCAGCACCACTTCGTGCCATTAGTTGTCACGACAACAGACAGCTAAATTCTATTCAGAAAATTTATGAATAGATGTATTATGCCTCCTGTGAAATTAGATTAATTTTATTTTTCGACTAGTCAGACGGACGCCTCAAAATATTTTCTGATTTTTTGAACATTTTCTCATGAATCTGTATTTTCCGATAATACGAATAACAAAACATGTGTCATGGACAGCGTTTGTTATTTCTTATAAAACAATCGTCATTTGACAAAGCTATTTGTGTTTATCCTTTGGCACATTAGGATACCGTACACTTTTCATAATTCTCATCCACAAATATCGCGTCTTTTATCTCCCTCTTGCCACATTGGTTCAAGTAGATTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAACAAGGATTACTCTACCTC</pcr_primer_p1>
		<pcr_primer_p2>ATAGGGTGGGGATTATCTTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAAACAAGGATTACTCTACCTCTGTTTATTGATATTCTTGTCTTTCATTTGCTTTGGCTTTGAATTTTTCTAAGTTGGCTTCTCACTCTACTAGTCTTTGCATTCTAACTAATCAAAGTTTTGTTGCCACCACCTAACGAAGCCATTCGATTTACTAAAATTTATATTTTGGATAGCAGCTCAAAATCTTGGATTTAGATTTCCAAAAGCTTCTTCTCAGTGCTGTATAGAAGATAATCCCCACCCTAT</canonical_amplicon>
		<polymorphic_amplicon>GGAAACAAGGATTACTCTACCTCTGTTTATTGATATTCTTGTCTTTCATTTGCTTTGGCTTTGAATTTTTCTAAGTTGGCTTCTCACTCTACTAGTCTTTGCATTCTAACTAATCAAAGTTTTGTTGCCACCACCTAASGAAGCCATTCGATTTACTAAAATTTATATTTTGGATAGCAGCTCAAAATCTTGGATTTAGATTTCCAAAAGCTTCTTCTCAGTGCTGTATAGAAGATAATCCCCACCCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28213</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>130279</contig_pos>
        <strand></strand>
        <context>AGAGACATGG[C/A]GAGAAACCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GATTTCCCACCGCGCGCATTTGTGTGGGGCCAGTCGGTGGAGAGACATGG</left_flank>
        <right_flank>GAGAAACCAAAAAGTTTTGTTTTTTTTTTCCAAATCACAGTTTTGCTGAT</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCCTTGTCATAAAAAGCCAAATAACTTTCCCATGTTGAACATTTTTAGGTCAGATTTCCAGTTTCTGGAGTTTGTGGTCTGGATATGGTCGATAAGTTATCAATTTTGAACTCTGATCAGTGATTCTCCAACACTGTACTCTTTTCATATATTACTGAAATGTTGTACATCAAAGTACAAACTTTCTTGAGCAGTAATAGAGAGAAACCATTGCAGTAATTGCTATTTTTCATATTTTCTACGAACTTCCGCCATCCATTATTTCTTCTTGTTCTTTCCATCTTTTTTGTTCTTCACATTCACCTGGAAAACTGAGGTGTGAAACCCCATAAAATATCCTCATTCCATTTCTCGCTAAAAATATATGAAATTCGCTCATTGCAGTGCGTCATTCGATGGTATAATGTAATGCGAATTTCCGGGTTTTCACACTGATTTTCAGTTTTTGATTTCCCACCGCGCGCATTTGTGTGGGGCCAGTCGGTGGAGAGACATGGCGAGAAACCAAAAAGTTTTGTTTTTTTTTTCCAAATCACAGTTTTGCTGATACAAAAATAACTGTCATGACGAATCTGAATGAGAATGTAAAGAACAAAACTTCGGTTGAGACCTGTACTGATTTGATACCAAAATCGAGAGAACTAATTATAGAGACAGAAAGCAAAATATTGAAAAGGGAAGGATGGGAACGAATTGATGTTTGTGTTCAGAGTTCAATGTTCAAAAAAACCAAATTTGCGATGAAAAATCAAAAATGTTGTTATTTCGAATAACAGTGCTACTAGGAAAATTGAACGAATGTTTGGAATTGTTTCTAGAAAAACGTTTAATGACATTAGATTCTAGTATAGGGTTATTCTGAAAAAGTTTGAATTTTTAGAATGTATAAAATTAATTTCAATTTTTAAAGAAAAATTTTTCGAAAAATATCATGTATAGGGGTACACGAATTGTAACTTTTTTTGAAAAAAATTGAAATAAGTCTCGTAACTCAAGGG</canonical>
            <polymorphic>CATCCTTGTCATAAAAAGCCAAATAACTTTCCCATGTTGAACATTTTTAGGTCAGATTTCCAGTTTCTGGAGTTTGTGGTCTGGATATGGTCGATAAGTTATCAATTTTGAACTCTGATCAGTGATTCTCCAACACTGTACTCTTTTCATATATTACTGAAATGTTGTACATCAAAGTACAAACTTTCTTGAGCAGTAATAGAGAGAAACCATTGCAGTAATTGCTATTTTTCATATTTTCTACGAACTTCCGCCATCCATTATTTCTTCTTGTTCTTTCCATCTTTTTTGTTCTTCACATTCACCTGGAAAACTGAGGTGTGAAACCCCATAAAATATCCTCATTCCATTTCTCGCTAAAAATATATGAAATTCGCTCATTGCAGTGCGTCATTCGATGGTATAATGTAATGCGAATTTCCGGGTTTTCACACTGATTTTCAGTTTTTGATTTCCCACCGCGCGCATTTGTGTGGGGCCAGTCGGTGGAGAGACATGGMGAGAAACCAAAAAGTTTTGTTTTTTTTTTCCAAATCACAGTTTTGCTGATACAAAAATAACTGTCATGACGAATCTGAATGAGAATGTAAAGAACAAAACTTCGGTTGAGACCTGTACTGATTTGATACCAAAATCGAGAGAACTAATTATAGAGACAGAAAGCAAAATATTGAAAAGGGAAGGATGGGAACGAATTGATGTTTGTGTTCAGAGTTCAATGTTCAAAAAAACCAAATTTGCGATGAAAAATCAAAAATGTTGTTATTTCGAATAACAGTGCTACTAGGAAAATTGAACGAATGTTTGGAATTGTTTCTAGAAAAACGTTTAATGACATTAGATTCTAGTATAGGGTTATTCTGAAAAAGTTTGAATTTTTAGAATGTATAAAATTAATTTCAATTTTTAAAGAAAAATTTTTCGAAAAATATCATGTATAGGGGTACACGAATTGTAACTTTTTTTGAAAAAAATTGAAATAAGTCTCGTAACTCAAGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCACACTGATTTTCAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCAATATTTTGCTTTCTGTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCACACTGATTTTCAGTTTTTGATTTCCCACCGCGCGCATTTGTGTGGGGCCAGTCGGTGGAGAGACATGGCGAGAAACCAAAAAGTTTTGTTTTTTTTTTCCAAATCACAGTTTTGCTGATACAAAAATAACTGTCATGACGAATCTGAATGAGAATGTAAAGAACAAAACTTCGGTTGAGACCTGTACTGATTTGATACCAAAATCGAGAGAACTAATTATAGAGACAGAAAGCAAAATATTGAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTCACACTGATTTTCAGTTTTTGATTTCCCACCGCGCGCATTTGTGTGGGGCCAGTCGGTGGAGAGACATGGMGAGAAACCAAAAAGTTTTGTTTTTTTTTTCCAAATCACAGTTTTGCTGATACAAAAATAACTGTCATGACGAATCTGAATGAGAATGTAAAGAACAAAACTTCGGTTGAGACCTGTACTGATTTGATACCAAAATCGAGAGAACTAATTATAGAGACAGAAAGCAAAATATTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28214</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>136961</contig_pos>
        <strand>+</strand>
        <context>ACAATCATGA[C/T]TGGTGTTGGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTTTTGGAAGGAAACTGCTCTCCTCTGGTTGGGCTTCCACAATCATGA</left_flank>
        <right_flank>TGGTGTTGGGATATTAGGGACAACGCTTGTATCCCTTTGTTGTGCCCTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCGCATATAAAAGTTTATGCGAACGACGAGGTCCGATATCGAAGATATTGGAAAAAAACAATAGGATTTGCTTCCCATCCCCTAAACTCCTACAGTATAAAGCATCAAGATTAAGAGAGAGAGAGAGAGAGAAGGAGAATTGAATGAGAATGTAGAAGAGGATGAATAGGAGAGAGAGAGAAATGATGAGAAAGAGAGTGCGAGAATGATTCGAGCCGGATATACACATTACAGCAGAAATCGAAAATCAGGACTTACTGGAATCTGGAGAGGCAGCGAGTTCCTTCTTGATCGTTTTTGCTGGCTTCATGGATTCCGGGATTTTCATGCTAGTAGCGAAATCCAATCCAAGACTGATAAGAATATTTCTGAAACTTTAGAAGATTACAGGTTAACCATATTCTCGGTTGATTTGTGTGCTTCTTACCTCTCGAAGTCCGTCGTAAGATCTTTTGGAAGGAAACTGCTCTCCTCTGGTTGGGCTTCCACAATCATGACTGGTGTTGGGATATTAGGGACAACGCTTGTATCCCTTTGTTGTGCCCTAGACTTTGTTGGAGATGATGGGACAACTTTGGCAGCGAATGTTGTTGATTTTGTCGGCACTGCCATGGATACATAGTCTGGGTCTTCAATTTCAGTCTTGATGGTTGTCAAATTGTTGTTGATCGTGTTATGATTGTTGTTATTGTTGTGACCGTTTTGACTGTTGCCATTGGTTCCCGTACTTGAAGTAATGATAACTGCAGTTGCTGTTGTTGCTGTTGAGGTAGTTGCTGTTGTGCCATTTGAAGACGTACCCGGTTCTGTTTTAATCTGAAATCAAAAACCTCTATATTTTGTGTTCTACTATTGATCCACTCACAACTTTAGGAGCCTTTTTAACAATAATATCATCTTTTGCTATTGCTTCATTCTGCTCTTTCTTGTGATGTTTCAGAATATGCTTTGTTAAATTTCCTGAAATTTATTTCTTTTATAATTTTATCTCATGTTTC</canonical>
            <polymorphic>TGTCGCATATAAAAGTTTATGCGAACGACGAGGTCCGATATCGAAGATATTGGAAAAAAACAATAGGATTTGCTTCCCATCCCCTAAACTCCTACAGTATAAAGCATCAAGATTAAGAGAGAGAGAGAGAGAGAAGGAGAATTGAATGAGAATGTAGAAGAGGATGAATAGGAGAGAGAGAGAAATGATGAGAAAGAGAGTGCGAGAATGATTCGAGCCGGATATACACATTACAGCAGAAATCGAAAATCAGGACTTACTGGAATCTGGAGAGGCAGCGAGTTCCTTCTTGATCGTTTTTGCTGGCTTCATGGATTCCGGGATTTTCATGCTAGTAGCGAAATCCAATCCAAGACTGATAAGAATATTTCTGAAACTTTAGAAGATTACAGGTTAACCATATTCTCGGTTGATTTGTGTGCTTCTTACCTCTCGAAGTCCGTCGTAAGATCTTTTGGAAGGAAACTGCTCTCCTCTGGTTGGGCTTCCACAATCATGAYTGGTGTTGGGATATTAGGGACAACGCTTGTATCCCTTTGTTGTGCCCTAGACTTTGTTGGAGATGATGGGACAACTTTGGCAGCGAATGTTGTTGATTTTGTCGGCACTGCCATGGATACATAGTCTGGGTCTTCAATTTCAGTCTTGATGGTTGTCAAATTGTTGTTGATCGTGTTATGATTGTTGTTATTGTTGTGACCGTTTTGACTGTTGCCATTGGTTCCCGTACTTGAAGTAATGATAACTGCAGTTGCTGTTGTTGCTGTTGAGGTAGTTGCTGTTGTGCCATTTGAAGACGTACCCGGTTCTGTTTTAATCTGAAATCAAAAACCTCTATATTTTGTGTTCTACTATTGATCCACTCACAACTTTAGGAGCCTTTTTAACAATAATATCATCTTTTGCTATTGCTTCATTCTGCTCTTTCTTGTGATGTTTCAGAATATGCTTTGTTAAATTTCCTGAAATTTATTTCTTTTATAATTTTATCTCATGTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAACCATATTCTCGGTTGATT</pcr_primer_p1>
		<pcr_primer_p2>AAATTGAAGACCCAGACTATGTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTAACCATATTCTCGGTTGATTTGTGTGCTTCTTACCTCTCGAAGTCCGTCGTAAGATCTTTTGGAAGGAAACTGCTCTCCTCTGGTTGGGCTTCCACAATCATGACTGGTGTTGGGATATTAGGGACAACGCTTGTATCCCTTTGTTGTGCCCTAGACTTTGTTGGAGATGATGGGACAACTTTGGCAGCGAATGTTGTTGATTTTGTCGGCACTGCCATGGATACATAGTCTGGGTCTTCAATTT</canonical_amplicon>
		<polymorphic_amplicon>TTAACCATATTCTCGGTTGATTTGTGTGCTTCTTACCTCTCGAAGTCCGTCGTAAGATCTTTTGGAAGGAAACTGCTCTCCTCTGGTTGGGCTTCCACAATCATGAYTGGTGTTGGGATATTAGGGACAACGCTTGTATCCCTTTGTTGTGCCCTAGACTTTGTTGGAGATGATGGGACAACTTTGGCAGCGAATGTTGTTGATTTTGTCGGCACTGCCATGGATACATAGTCTGGGTCTTCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28215</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>214501</contig_pos>
        <strand>+</strand>
        <context>TACTTATCTC[A/G]TACCAAAAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATGCTCTATTCAAAATACTTACATCATTTTTCTTGTTATTACTTATCTC</left_flank>
        <right_flank>TACCAAAAACTTTGCCAAACAAACAGATCACACATCATTTCTAATGCTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGCTCAAGAATGACATCACTGAGCTCCAGAAGGAGGTTTGTAACCGCTTTTCTGAGCGCAAAAATCCTAATTTTCGTTTTACAGGTTGTGAATCTTGAGGAAATTCGCGACAACTTGCCAACCAAATGCTTCAATGTCATCAATTTGGAGCAAGAGGGACAGAAGTAAAATGAAAGAACGATTATATTCTATTTATAATTATTAATAATTTACGAGTCTTTTTTCATTTGGTTTTTTCTTGTTTTTCAATTACTCCTTTTCCTGTCGCCTTATTGTCAATGTTTCTTCTTTTTCCCTGTGCAATATAAGATTGAACTTTTGGCCCTCCGGCTACTGTTCCATCTTCCTATCTGACTTTGTTTTGTTTTTCATTACTTTTTTGTTTGTGATAATGCTGTGTTATCACATTAAGCCCCCTTTCCCCTTCCCTTCACAAAACGTTCTTCACGATGCTCTATTCAAAATACTTACATCATTTTTCTTGTTATTACTTATCTCGTACCAAAAACTTTGCCAAACAAACAGATCACACATCATTTCTAATGCTTTCTGCTCCTTTCCTTCCTTCGAATCAAAATGTTGGAATAAATTTTGAATAATTTAATTTTTTTCAACCAAAGCGTTGTGTTCGGGTTTTAAAGCCAACATTTACATAGCCTCTATCATTGTTGTATGTACTCTACATTGTGGTTTGTTGCGTATTGGTCGTTTAAGGTTGACCTTGAAACAAAAGATACCGACATTGTGTCTCTTCTCGACAGTATAAAAGAGATGATGATACGAAAAAGAGATAGGAGAAGAAGAATAACCAAACAAATATTCGTATTCGTTCAACACGTGACATGACTTCTGCAAACTATCGCGACGAATTCAAATCTGTTATTCAAAAATTGATTGATTCTCCGGATAATGAGCATGTTGCGCTCACAAACTTCATCCGGAATGAATTTGTGAAGTCTGAATCGTTGATGGATTCTGTGAATCCAGCAACTGGAAAAC</canonical>
            <polymorphic>CAGCTCAAGAATGACATCACTGAGCTCCAGAAGGAGGTTTGTAACCGCTTTTCTGAGCGCAAAAATCCTAATTTTCGTTTTACAGGTTGTGAATCTTGAGGAAATTCGCGACAACTTGCCAACCAAATGCTTCAATGTCATCAATTTGGAGCAAGAGGGACAGAAGTAAAATGAAAGAACGATTATATTCTATTTATAATTATTAATAATTTACGAGTCTTTTTTCATTTGGTTTTTTCTTGTTTTTCAATTACTCCTTTTCCTGTCGCCTTATTGTCAATGTTTCTTCTTTTTCCCTGTGCAATATAAGATTGAACTTTTGGCCCTCCGGCTACTGTTCCATCTTCCTATCTGACTTTGTTTTGTTTTTCATTACTTTTTTGTTTGTGATAATGCTGTGTTATCACATTAAGCCCCCTTTCCCCTTCCCTTCACAAAACGTTCTTCACGATGCTCTATTCAAAATACTTACATCATTTTTCTTGTTATTACTTATCTCRTACCAAAAACTTTGCCAAACAAACAGATCACACATCATTTCTAATGCTTTCTGCTCCTTTCCTTCCTTCGAATCAAAATGTTGGAATAAATTTTGAATAATTTAATTTTTTTCAACCAAAGCGTTGTGTTCGGGTTTTAAAGCCAACATTTACATAGCCTCTATCATTGTTGTATGTACTCTACATTGTGGTTTGTTGCGTATTGGTCGTTTAAGGTTGACCTTGAAACAAAAGATACCGACATTGTGTCTCTTCTCGACAGTATAAAAGAGATGATGATACGAAAAAGAGATAGGAGAAGAAGAATAACCAAACAAATATTCGTATTCGTTCAACACGTGACATGACTTCTGCAAACTATCGCGACGAATTCAAATCTGTTATTCAAAAATTGATTGATTCTCCGGATAATGAGCATGTTGCGCTCACAAACTTCATCCGGAATGAATTTGTGAAGTCTGAATCGTTGATGGATTCTGTGAATCCAGCAACTGGAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 323 176</canonical_bands>
                <polymorphic_bands>677 323</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACGATGCTCTATTCAAAATACT</pcr_primer_p1>
		<pcr_primer_p2>CCACAATGTAGAGTACATACAACAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACGATGCTCTATTCAAAATACTTACATCATTTTTCTTGTTATTACTTATCTCGTACCAAAAACTTTGCCAAACAAACAGATCACACATCATTTCTAATGCTTTCTGCTCCTTTCCTTCCTTCGAATCAAAATGTTGGAATAAATTTTGAATAATTTAATTTTTTTCAACCAAAGCGTTGTGTTCGGGTTTTAAAGCCAACATTTACATAGCCTCTATCATTGTTGTATGTACTCTACATTGTGG</canonical_amplicon>
		<polymorphic_amplicon>CACGATGCTCTATTCAAAATACTTACATCATTTTTCTTGTTATTACTTATCTCRTACCAAAAACTTTGCCAAACAAACAGATCACACATCATTTCTAATGCTTTCTGCTCCTTTCCTTCCTTCGAATCAAAATGTTGGAATAAATTTTGAATAATTTAATTTTTTTCAACCAAAGCGTTGTGTTCGGGTTTTAAAGCCAACATTTACATAGCCTCTATCATTGTTGTATGTACTCTACATTGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28216</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>341564</contig_pos>
        <strand>+</strand>
        <context>AAAATTCTTC[A/G]AAAAATGTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTTCGGAAAGAAACCCTTGAAAACTGTTTTTTTCGACAAAAATTCTTC</left_flank>
        <right_flank>AAAAATGTGAGAAGCGGAGTTTTGAAGTGTCATTGCTAAAAATTTGTTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATACGACCGATTGATTAAATAAAAATGTACGGATGAAATATGAAAACAACGAATACTTTAATTTCACAGAGGGAGAGATGGAGATTCTGGACAAATTGAAGACACGATTCGGAAGCGTTGCGGTGGTGCTCACTTTGCTAATCGGATGTACACCGGATGGATGCTAAGTGGTTCTCCATCTGAAACATAATCCACAAGTTTCGCGATATGTGGTTGATATGTAGATCGTCTTATTTCCAGAATATCAGACTTGATGCAAAATCGGCCATGAGGATTTTTAAAGTTATAGGTATTGTGAAATCTGTAATGGAAAATCACCATCCTGCCGATTCAATTTTTTTCCTTTTTGTGTATAAAATTCCAAAAGTCATCAATTGACAAAACTTTAATCATAATATCAAAAAAGTTTTGTTAGTCATTTTTTACTGTTTACTTCTCACCAATGTGTCTTTTCGGAAAGAAACCCTTGAAAACTGTTTTTTTCGACAAAAATTCTTCGAAAAATGTGAGAAGCGGAGTTTTGAAGTGTCATTGCTAAAAATTTGTTCCTTGTGTGTTGTACGTTTTGTGATGGCCTAACTTTTGCACGTGGAGTTTTCTAGGCCAACATGGTAAATTTACTTAGAATTGGGCTAAAACTCACCTGGGGTTTTCTTGGTCATTTTGAAGTGGCGGCCTAAAAATTCAATTTGCAAAATTTCGGCCATCACTTTAAAACGACCTAGAAAACACACCAATTGAATATCAGTTCAATTCTATGTCAGTTTAACTTAATGGCCTGGAGAACCCGACTTGCAAAAGTTAAGCCATCGCGTTAAAATGATTTCGTTTCGAAGAACGCTCAAAAAATGCATGAGAAATTGCTCGTAAAATTTTTCGAAATTATTCGAGGAATTTCTCGAGGAATTTCTTGAAAAGTTTATCGAAAAATTTGTCGAAAGCGTTTCAAAAAATACACTGCTTCTTACGGGGCAGCCAAATCATTTAAAAAAATAAGAT</canonical>
            <polymorphic>AATACGACCGATTGATTAAATAAAAATGTACGGATGAAATATGAAAACAACGAATACTTTAATTTCACAGAGGGAGAGATGGAGATTCTGGACAAATTGAAGACACGATTCGGAAGCGTTGCGGTGGTGCTCACTTTGCTAATCGGATGTACACCGGATGGATGCTAAGTGGTTCTCCATCTGAAACATAATCCACAAGTTTCGCGATATGTGGTTGATATGTAGATCGTCTTATTTCCAGAATATCAGACTTGATGCAAAATCGGCCATGAGGATTTTTAAAGTTATAGGTATTGTGAAATCTGTAATGGAAAATCACCATCCTGCCGATTCAATTTTTTTCCTTTTTGTGTATAAAATTCCAAAAGTCATCAATTGACAAAACTTTAATCATAATATCAAAAAAGTTTTGTTAGTCATTTTTTACTGTTTACTTCTCACCAATGTGTCTTTTCGGAAAGAAACCCTTGAAAACTGTTTTTTTCGACAAAAATTCTTCRAAAAATGTGAGAAGCGGAGTTTTGAAGTGTCATTGCTAAAAATTTGTTCCTTGTGTGTTGTACGTTTTGTGATGGCCTAACTTTTGCACGTGGAGTTTTCTAGGCCAACATGGTAAATTTACTTAGAATTGGGCTAAAACTCACCTGGGGTTTTCTTGGTCATTTTGAAGTGGCGGCCTAAAAATTCAATTTGCAAAATTTCGGCCATCACTTTAAAACGACCTAGAAAACACACCAATTGAATATCAGTTCAATTCTATGTCAGTTTAACTTAATGGCCTGGAGAACCCGACTTGCAAAAGTTAAGCCATCGCGTTAAAATGATTTCGTTTCGAAGAACGCTCAAAAAATGCATGAGAAATTGCTCGTAAAATTTTTCGAAATTATTCGAGGAATTTCTCGAGGAATTTCTTGAAAAGTTTATCGAAAAATTTGTCGAAAGCGTTTCAAAAAATACACTGCTTCTTACGGGGCAGCCAAATCATTTAAAAAAATAAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>498 334 122 46</canonical_bands>
                <polymorphic_bands>832 122 46</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>485 334 63 46 24 14 12 12 10</canonical_bands>
                <polymorphic_bands>485 348 63 46 24 12 12 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACTTCTCACCAATGTGTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCGAAACGAAATCATTTTAAC</pcr_primer_p2>
		<pcr_amplicon_size>405</pcr_amplicon_size>
		<canonical_amplicon>TACTTCTCACCAATGTGTCTTTTCGGAAAGAAACCCTTGAAAACTGTTTTTTTCGACAAAAATTCTTCGAAAAATGTGAGAAGCGGAGTTTTGAAGTGTCATTGCTAAAAATTTGTTCCTTGTGTGTTGTACGTTTTGTGATGGCCTAACTTTTGCACGTGGAGTTTTCTAGGCCAACATGGTAAATTTACTTAGAATTGGGCTAAAACTCACCTGGGGTTTTCTTGGTCATTTTGAAGTGGCGGCCTAAAAATTCAATTTGCAAAATTTCGGCCATCACTTTAAAACGACCTAGAAAACACACCAATTGAATATCAGTTCAATTCTATGTCAGTTTAACTTAATGGCCTGGAGAACCCGACTTGCAAAAGTTAAGCCATCGCGTTAAAATGATTTCGTTTCGAA</canonical_amplicon>
		<polymorphic_amplicon>TACTTCTCACCAATGTGTCTTTTCGGAAAGAAACCCTTGAAAACTGTTTTTTTCGACAAAAATTCTTCRAAAAATGTGAGAAGCGGAGTTTTGAAGTGTCATTGCTAAAAATTTGTTCCTTGTGTGTTGTACGTTTTGTGATGGCCTAACTTTTGCACGTGGAGTTTTCTAGGCCAACATGGTAAATTTACTTAGAATTGGGCTAAAACTCACCTGGGGTTTTCTTGGTCATTTTGAAGTGGCGGCCTAAAAATTCAATTTGCAAAATTTCGGCCATCACTTTAAAACGACCTAGAAAACACACCAATTGAATATCAGTTCAATTCTATGTCAGTTTAACTTAATGGCCTGGAGAACCCGACTTGCAAAAGTTAAGCCATCGCGTTAAAATGATTTCGTTTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28217</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>357460</contig_pos>
        <strand></strand>
        <context>TCACTGTGTC[C/T]ATTTTCTTTY</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCCATATATTGAGATTTTATTTTCTTTTCCACTCTTTTTTCACTGTGTC</left_flank>
        <right_flank>ATTTTCTTTTAAATATAACTTGTAATAAAGCGAATTTTTTTCTTTTTATT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTTTCACAGTATGTTGGGCACCATTTTTCACGTGAGTCATCATTCAAGAAGAAAACTTTGAACGTTTCAAAATTTTAGAATGTACGTTCTTGTGCAGTTTTGCAAAGGATGCAGTCCAAACGCACACATCGAGATGTTCATCACATGGCTTGGCTACAGTAACTCTGCCATGAACCCTATTATTTATACGGTAAAACCCAGACGTATTATTTTCATTATTTCCAAAATATTTGCAGGTTTTCAACAGAGACTATCAGATTGCTCTAAAACGGCTCTTCACGTCGGATAAAAAACCAAGCTCATCCTCTCGTGTTTAATTTAACTTATTGTACAATGCTTTTAAAATTTCCAACCTGTTAGTGTCCCCTATTTGCAAAAAAAAAACATAACAACCATGTCAAGTACCATCTCGGGTTCTATTGCTTCTTTTCTGTCTGTTGCCCACAGGGCCATATATTGAGATTTTATTTTCTTTTCCACTCTTTTTTCACTGTGTCCATTTTCTTTTAAATATAACTTGTAATAAAGCGAATTTTTTTCTTTTTATTTAAACTATCAAACACTTGACTCGATCCCTACCCGATCCCGAGATAGACTGACCGAACGGGCGGATTTGAGAAGGAGAGAGAAACGGTATCGAGTAACTCAAAGTACTTTGTTTGCCAGCGACTTTGTGCCCGCATCGGCTCTGTCACCTTTCCAATATTTGTTCGACTTTTTCTTCCGCACACAAGTCCTTTGGAAAGGAAAAGAGCCAAGGAAAGGGGAGGAAGAAACAAAAATGACGGCGATCTGATCCACTTTCCCCTGTCAGGTGGGTCAATTGACATACAGTGTGAGACTTATTTAAATGTCATGTGGGCATTAATTCATTAGCCCAAAATTAGGAAAGAAATGAGTGAGTGATATCTTGAAAGTTGATGAGTGTTCAAAATGCGAAATGACATTTCTTCCAGGACCATTCCGTAACCGTCGCCATGAGCAACGACACGGTCAGA</canonical>
            <polymorphic>ATGTTTCACAGTATGTTGGGCACCATTTTTCACGTGAGTCATCATTCAAGAAGAAAACTTTGAACGTTTCAAAATTTTAGAATGTACGTTCTTGTGCAGTTTTGCAAAGGATGCAGTCCAAACGCACACATCGAGATGTTCATCACATGGCTTGGCTACAGTAACTCTGCCATGAACCCTATTATTTATACGGTAAAACCCAGACGTATTATTTTCATTATTTCCAAAATATTTGCAGGTTTTCAACAGAGACTATCAGATTGCTCTAAAACGGCTCTTCACGTCGGATAAAAAACCAAGCTCATCCTCTCGTGTTTAATTTAACTTATTGTACAATGCTTTTAAAATTTCCAACCTGTTAGTGTCCCCTATTTGCAAAAAAAAAACATAACAACCATGTCAAGTACCATCTCGGGTTCTATTGCTTCTTTTCTGTCTGTTGCCCACAGGGCCATATATTGAGATTTTATTTTCTTTTCCACTCTTTTTTCACTGTGTCYATTTTCTTTTAAATATAACTTGTAATAAAGCGAATTTTTTTCTTTTTATTTAAACTATCAAACACTTGACTCGATCCCTACCCGATCCCGAGATAGACTGACCGAACGGGCGGATTTGAGAAGGAGAGAGAAACGGTATCGAGTAACTCAAAGTACTTTGTTTGCCAGCGACTTTGTGCCCGCATCGGCTCTGTCACCTTTCCAATATTTGTTCGACTTTTTCTTCCGCACACAAGTCCTTTGGAAAGGAAAAGAGCCAAGGAAAGGGGAGGAAGAAACAAAAATGACGGCGATCTGATCCACTTTCCCCTGTCAGGTGGGTCAATTGACATACAGTGTGAGACTTATTTAAATGTCATGTGGGCATTAATTCATTAGCCCAAAATTAGGAAAGAAATGAGTGAGTGATATCTTGAAAGTTGATGAGTGTTCAAAATGCGAAATGACATTTCTTCCAGGACCATTCCGTAACCGTCGCCATGAGCAACGACACGGTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAACAACCATGTCAAGTACCAT</pcr_primer_p1>
		<pcr_primer_p2>TACCGTTTCTCTCTCCTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATAACAACCATGTCAAGTACCATCTCGGGTTCTATTGCTTCTTTTCTGTCTGTTGCCCACAGGGCCATATATTGAGATTTTATTTTCTTTTCCACTCTTTTTTCACTGTGTCCATTTTCTTTTAAATATAACTTGTAATAAAGCGAATTTTTTTCTTTTTATTTAAACTATCAAACACTTGACTCGATCCCTACCCGATCCCGAGATAGACTGACCGAACGGGCGGATTTGAGAAGGAGAGAGAAACGGTA</canonical_amplicon>
		<polymorphic_amplicon>ATAACAACCATGTCAAGTACCATCTCGGGTTCTATTGCTTCTTTTCTGTCTGTTGCCCACAGGGCCATATATTGAGATTTTATTTTCTTTTCCACTCTTTTTTCACTGTGTCYATTTTCTTTTAAATATAACTTGTAATAAAGCGAATTTTTTTCTTTTTATTTAAACTATCAAACACTTGACTCGATCCCTACCCGATCCCGAGATAGACTGACCGAACGGGCGGATTTGAGAAGGAGAGAGAAACGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28218</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>357470</contig_pos>
        <strand>+</strand>
        <context>YATTTTCTTT[C/T]AAATATAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAGATTTTATTTTCTTTTCCACTCTTTTTTCACTGTGTCCATTTTCTTT</left_flank>
        <right_flank>AAATATAACTTGTAATAAAGCGAATTTTTTTCTTTTTATTTAAACTATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATGTTGGGCACCATTTTTCACGTGAGTCATCATTCAAGAAGAAAACTTTGAACGTTTCAAAATTTTAGAATGTACGTTCTTGTGCAGTTTTGCAAAGGATGCAGTCCAAACGCACACATCGAGATGTTCATCACATGGCTTGGCTACAGTAACTCTGCCATGAACCCTATTATTTATACGGTAAAACCCAGACGTATTATTTTCATTATTTCCAAAATATTTGCAGGTTTTCAACAGAGACTATCAGATTGCTCTAAAACGGCTCTTCACGTCGGATAAAAAACCAAGCTCATCCTCTCGTGTTTAATTTAACTTATTGTACAATGCTTTTAAAATTTCCAACCTGTTAGTGTCCCCTATTTGCAAAAAAAAAACATAACAACCATGTCAAGTACCATCTCGGGTTCTATTGCTTCTTTTCTGTCTGTTGCCCACAGGGCCATATATTGAGATTTTATTTTCTTTTCCACTCTTTTTTCACTGTGTCCATTTTCTTTTAAATATAACTTGTAATAAAGCGAATTTTTTTCTTTTTATTTAAACTATCAAACACTTGACTCGATCCCTACCCGATCCCGAGATAGACTGACCGAACGGGCGGATTTGAGAAGGAGAGAGAAACGGTATCGAGTAACTCAAAGTACTTTGTTTGCCAGCGACTTTGTGCCCGCATCGGCTCTGTCACCTTTCCAATATTTGTTCGACTTTTTCTTCCGCACACAAGTCCTTTGGAAAGGAAAAGAGCCAAGGAAAGGGGAGGAAGAAACAAAAATGACGGCGATCTGATCCACTTTCCCCTGTCAGGTGGGTCAATTGACATACAGTGTGAGACTTATTTAAATGTCATGTGGGCATTAATTCATTAGCCCAAAATTAGGAAAGAAATGAGTGAGTGATATCTTGAAAGTTGATGAGTGTTCAAAATGCGAAATGACATTTCTTCCAGGACCATTCCGTAACCGTCGCCATGAGCAACGACACGGTCAGAGTGCTACCCG</canonical>
            <polymorphic>GTATGTTGGGCACCATTTTTCACGTGAGTCATCATTCAAGAAGAAAACTTTGAACGTTTCAAAATTTTAGAATGTACGTTCTTGTGCAGTTTTGCAAAGGATGCAGTCCAAACGCACACATCGAGATGTTCATCACATGGCTTGGCTACAGTAACTCTGCCATGAACCCTATTATTTATACGGTAAAACCCAGACGTATTATTTTCATTATTTCCAAAATATTTGCAGGTTTTCAACAGAGACTATCAGATTGCTCTAAAACGGCTCTTCACGTCGGATAAAAAACCAAGCTCATCCTCTCGTGTTTAATTTAACTTATTGTACAATGCTTTTAAAATTTCCAACCTGTTAGTGTCCCCTATTTGCAAAAAAAAAACATAACAACCATGTCAAGTACCATCTCGGGTTCTATTGCTTCTTTTCTGTCTGTTGCCCACAGGGCCATATATTGAGATTTTATTTTCTTTTCCACTCTTTTTTCACTGTGTCCATTTTCTTTYAAATATAACTTGTAATAAAGCGAATTTTTTTCTTTTTATTTAAACTATCAAACACTTGACTCGATCCCTACCCGATCCCGAGATAGACTGACCGAACGGGCGGATTTGAGAAGGAGAGAGAAACGGTATCGAGTAACTCAAAGTACTTTGTTTGCCAGCGACTTTGTGCCCGCATCGGCTCTGTCACCTTTCCAATATTTGTTCGACTTTTTCTTCCGCACACAAGTCCTTTGGAAAGGAAAAGAGCCAAGGAAAGGGGAGGAAGAAACAAAAATGACGGCGATCTGATCCACTTTCCCCTGTCAGGTGGGTCAATTGACATACAGTGTGAGACTTATTTAAATGTCATGTGGGCATTAATTCATTAGCCCAAAATTAGGAAAGAAATGAGTGAGTGATATCTTGAAAGTTGATGAGTGTTCAAAATGCGAAATGACATTTCTTCCAGGACCATTCCGTAACCGTCGCCATGAGCAACGACACGGTCAGAGTGCTACCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>333 299 167 160 41</canonical_bands>
                <polymorphic_bands>333 299 208 160</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>306 299 167 143 41 21 18 5</canonical_bands>
                <polymorphic_bands>306 299 208 143 21 18 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAACAACCATGTCAAGTACCAT</pcr_primer_p1>
		<pcr_primer_p2>TACCGTTTCTCTCTCCTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATAACAACCATGTCAAGTACCATCTCGGGTTCTATTGCTTCTTTTCTGTCTGTTGCCCACAGGGCCATATATTGAGATTTTATTTTCTTTTCCACTCTTTTTTCACTGTGTCCATTTTCTTTTAAATATAACTTGTAATAAAGCGAATTTTTTTCTTTTTATTTAAACTATCAAACACTTGACTCGATCCCTACCCGATCCCGAGATAGACTGACCGAACGGGCGGATTTGAGAAGGAGAGAGAAACGGTA</canonical_amplicon>
		<polymorphic_amplicon>ATAACAACCATGTCAAGTACCATCTCGGGTTCTATTGCTTCTTTTCTGTCTGTTGCCCACAGGGCCATATATTGAGATTTTATTTTCTTTTCCACTCTTTTTTCACTGTGTCCATTTTCTTTYAAATATAACTTGTAATAAAGCGAATTTTTTTCTTTTTATTTAAACTATCAAACACTTGACTCGATCCCTACCCGATCCCGAGATAGACTGACCGAACGGGCGGATTTGAGAAGGAGAGAGAAACGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28219</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>357483</contig_pos>
        <strand>+</strand>
        <context>ATATAACTTG[G/T]AATAAAGCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTTTTCCACTCTTTTTTCACTGTGTCCATTTTCTTTTAAATATAACTTG</left_flank>
        <right_flank>AATAAAGCGAATTTTTTTCTTTTTATTTAAACTATCAAACACTTGACTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTTTCACGTGAGTCATCATTCAAGAAGAAAACTTTGAACGTTTCAAAATTTTAGAATGTACGTTCTTGTGCAGTTTTGCAAAGGATGCAGTCCAAACGCACACATCGAGATGTTCATCACATGGCTTGGCTACAGTAACTCTGCCATGAACCCTATTATTTATACGGTAAAACCCAGACGTATTATTTTCATTATTTCCAAAATATTTGCAGGTTTTCAACAGAGACTATCAGATTGCTCTAAAACGGCTCTTCACGTCGGATAAAAAACCAAGCTCATCCTCTCGTGTTTAATTTAACTTATTGTACAATGCTTTTAAAATTTCCAACCTGTTAGTGTCCCCTATTTGCAAAAAAAAAACATAACAACCATGTCAAGTACCATCTCGGGTTCTATTGCTTCTTTTCTGTCTGTTGCCCACAGGGCCATATATTGAGATTTTATTTTCTTTTCCACTCTTTTTTCACTGTGTCCATTTTCTTTTAAATATAACTTGTAATAAAGCGAATTTTTTTCTTTTTATTTAAACTATCAAACACTTGACTCGATCCCTACCCGATCCCGAGATAGACTGACCGAACGGGCGGATTTGAGAAGGAGAGAGAAACGGTATCGAGTAACTCAAAGTACTTTGTTTGCCAGCGACTTTGTGCCCGCATCGGCTCTGTCACCTTTCCAATATTTGTTCGACTTTTTCTTCCGCACACAAGTCCTTTGGAAAGGAAAAGAGCCAAGGAAAGGGGAGGAAGAAACAAAAATGACGGCGATCTGATCCACTTTCCCCTGTCAGGTGGGTCAATTGACATACAGTGTGAGACTTATTTAAATGTCATGTGGGCATTAATTCATTAGCCCAAAATTAGGAAAGAAATGAGTGAGTGATATCTTGAAAGTTGATGAGTGTTCAAAATGCGAAATGACATTTCTTCCAGGACCATTCCGTAACCGTCGCCATGAGCAACGACACGGTCAGAGTGCTACCCGATGTTTGGCACTA</canonical>
            <polymorphic>CATTTTTCACGTGAGTCATCATTCAAGAAGAAAACTTTGAACGTTTCAAAATTTTAGAATGTACGTTCTTGTGCAGTTTTGCAAAGGATGCAGTCCAAACGCACACATCGAGATGTTCATCACATGGCTTGGCTACAGTAACTCTGCCATGAACCCTATTATTTATACGGTAAAACCCAGACGTATTATTTTCATTATTTCCAAAATATTTGCAGGTTTTCAACAGAGACTATCAGATTGCTCTAAAACGGCTCTTCACGTCGGATAAAAAACCAAGCTCATCCTCTCGTGTTTAATTTAACTTATTGTACAATGCTTTTAAAATTTCCAACCTGTTAGTGTCCCCTATTTGCAAAAAAAAAACATAACAACCATGTCAAGTACCATCTCGGGTTCTATTGCTTCTTTTCTGTCTGTTGCCCACAGGGCCATATATTGAGATTTTATTTTCTTTTCCACTCTTTTTTCACTGTGTCCATTTTCTTTTAAATATAACTTGKAATAAAGCGAATTTTTTTCTTTTTATTTAAACTATCAAACACTTGACTCGATCCCTACCCGATCCCGAGATAGACTGACCGAACGGGCGGATTTGAGAAGGAGAGAGAAACGGTATCGAGTAACTCAAAGTACTTTGTTTGCCAGCGACTTTGTGCCCGCATCGGCTCTGTCACCTTTCCAATATTTGTTCGACTTTTTCTTCCGCACACAAGTCCTTTGGAAAGGAAAAGAGCCAAGGAAAGGGGAGGAAGAAACAAAAATGACGGCGATCTGATCCACTTTCCCCTGTCAGGTGGGTCAATTGACATACAGTGTGAGACTTATTTAAATGTCATGTGGGCATTAATTCATTAGCCCAAAATTAGGAAAGAAATGAGTGAGTGATATCTTGAAAGTTGATGAGTGTTCAAAATGCGAAATGACATTTCTTCCAGGACCATTCCGTAACCGTCGCCATGAGCAACGACACGGTCAGAGTGCTACCCGATGTTTGGCACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGATTTTATTTTCTTTTCCAC</pcr_primer_p1>
		<pcr_primer_p2>AAATATTGGAAAGGTGACAGAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGAGATTTTATTTTCTTTTCCACTCTTTTTTCACTGTGTCCATTTTCTTTTAAATATAACTTGTAATAAAGCGAATTTTTTTCTTTTTATTTAAACTATCAAACACTTGACTCGATCCCTACCCGATCCCGAGATAGACTGACCGAACGGGCGGATTTGAGAAGGAGAGAGAAACGGTATCGAGTAACTCAAAGTACTTTGTTTGCCAGCGACTTTGTGCCCGCATCGGCTCTGTCACCTTTCCAATATTT</canonical_amplicon>
		<polymorphic_amplicon>TGAGATTTTATTTTCTTTTCCACTCTTTTTTCACTGTGTCCATTTTCTTTTAAATATAACTTGKAATAAAGCGAATTTTTTTCTTTTTATTTAAACTATCAAACACTTGACTCGATCCCTACCCGATCCCGAGATAGACTGACCGAACGGGCGGATTTGAGAAGGAGAGAGAAACGGTATCGAGTAACTCAAAGTACTTTGTTTGCCAGCGACTTTGTGCCCGCATCGGCTCTGTCACCTTTCCAATATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28220</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>357500</contig_pos>
        <strand>+</strand>
        <context>GCGAATTTTT[C/T]TCTTTTTATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCACTGTGTCCATTTTCTTTTAAATATAACTTGTAATAAAGCGAATTTTT</left_flank>
        <right_flank>TCTTTTTATTTAAACTATCAAACACTTGACTCGATCCCTACCCGATCCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCATTCAAGAAGAAAACTTTGAACGTTTCAAAATTTTAGAATGTACGTTCTTGTGCAGTTTTGCAAAGGATGCAGTCCAAACGCACACATCGAGATGTTCATCACATGGCTTGGCTACAGTAACTCTGCCATGAACCCTATTATTTATACGGTAAAACCCAGACGTATTATTTTCATTATTTCCAAAATATTTGCAGGTTTTCAACAGAGACTATCAGATTGCTCTAAAACGGCTCTTCACGTCGGATAAAAAACCAAGCTCATCCTCTCGTGTTTAATTTAACTTATTGTACAATGCTTTTAAAATTTCCAACCTGTTAGTGTCCCCTATTTGCAAAAAAAAAACATAACAACCATGTCAAGTACCATCTCGGGTTCTATTGCTTCTTTTCTGTCTGTTGCCCACAGGGCCATATATTGAGATTTTATTTTCTTTTCCACTCTTTTTTCACTGTGTCCATTTTCTTTTAAATATAACTTGTAATAAAGCGAATTTTTTTCTTTTTATTTAAACTATCAAACACTTGACTCGATCCCTACCCGATCCCGAGATAGACTGACCGAACGGGCGGATTTGAGAAGGAGAGAGAAACGGTATCGAGTAACTCAAAGTACTTTGTTTGCCAGCGACTTTGTGCCCGCATCGGCTCTGTCACCTTTCCAATATTTGTTCGACTTTTTCTTCCGCACACAAGTCCTTTGGAAAGGAAAAGAGCCAAGGAAAGGGGAGGAAGAAACAAAAATGACGGCGATCTGATCCACTTTCCCCTGTCAGGTGGGTCAATTGACATACAGTGTGAGACTTATTTAAATGTCATGTGGGCATTAATTCATTAGCCCAAAATTAGGAAAGAAATGAGTGAGTGATATCTTGAAAGTTGATGAGTGTTCAAAATGCGAAATGACATTTCTTCCAGGACCATTCCGTAACCGTCGCCATGAGCAACGACACGGTCAGAGTGCTACCCGATGTTTGGCACTAGTATTTTCAGTTCTGAC</canonical>
            <polymorphic>ATCATTCAAGAAGAAAACTTTGAACGTTTCAAAATTTTAGAATGTACGTTCTTGTGCAGTTTTGCAAAGGATGCAGTCCAAACGCACACATCGAGATGTTCATCACATGGCTTGGCTACAGTAACTCTGCCATGAACCCTATTATTTATACGGTAAAACCCAGACGTATTATTTTCATTATTTCCAAAATATTTGCAGGTTTTCAACAGAGACTATCAGATTGCTCTAAAACGGCTCTTCACGTCGGATAAAAAACCAAGCTCATCCTCTCGTGTTTAATTTAACTTATTGTACAATGCTTTTAAAATTTCCAACCTGTTAGTGTCCCCTATTTGCAAAAAAAAAACATAACAACCATGTCAAGTACCATCTCGGGTTCTATTGCTTCTTTTCTGTCTGTTGCCCACAGGGCCATATATTGAGATTTTATTTTCTTTTCCACTCTTTTTTCACTGTGTCCATTTTCTTTTAAATATAACTTGTAATAAAGCGAATTTTTYTCTTTTTATTTAAACTATCAAACACTTGACTCGATCCCTACCCGATCCCGAGATAGACTGACCGAACGGGCGGATTTGAGAAGGAGAGAGAAACGGTATCGAGTAACTCAAAGTACTTTGTTTGCCAGCGACTTTGTGCCCGCATCGGCTCTGTCACCTTTCCAATATTTGTTCGACTTTTTCTTCCGCACACAAGTCCTTTGGAAAGGAAAAGAGCCAAGGAAAGGGGAGGAAGAAACAAAAATGACGGCGATCTGATCCACTTTCCCCTGTCAGGTGGGTCAATTGACATACAGTGTGAGACTTATTTAAATGTCATGTGGGCATTAATTCATTAGCCCAAAATTAGGAAAGAAATGAGTGAGTGATATCTTGAAAGTTGATGAGTGTTCAAAATGCGAAATGACATTTCTTCCAGGACCATTCCGTAACCGTCGCCATGAGCAACGACACGGTCAGAGTGCTACCCGATGTTTGGCACTAGTATTTTCAGTTCTGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGATTTTATTTTCTTTTCCAC</pcr_primer_p1>
		<pcr_primer_p2>AAATATTGGAAAGGTGACAGAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGAGATTTTATTTTCTTTTCCACTCTTTTTTCACTGTGTCCATTTTCTTTTAAATATAACTTGTAATAAAGCGAATTTTTTTCTTTTTATTTAAACTATCAAACACTTGACTCGATCCCTACCCGATCCCGAGATAGACTGACCGAACGGGCGGATTTGAGAAGGAGAGAGAAACGGTATCGAGTAACTCAAAGTACTTTGTTTGCCAGCGACTTTGTGCCCGCATCGGCTCTGTCACCTTTCCAATATTT</canonical_amplicon>
		<polymorphic_amplicon>TGAGATTTTATTTTCTTTTCCACTCTTTTTTCACTGTGTCCATTTTCTTTTAAATATAACTTGTAATAAAGCGAATTTTTYTCTTTTTATTTAAACTATCAAACACTTGACTCGATCCCTACCCGATCCCGAGATAGACTGACCGAACGGGCGGATTTGAGAAGGAGAGAGAAACGGTATCGAGTAACTCAAAGTACTTTGTTTGCCAGCGACTTTGTGCCCGCATCGGCTCTGTCACCTTTCCAATATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28221</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>367077</contig_pos>
        <strand>+</strand>
        <context>TAAAAAGTGC[A/G]GAYCTCTCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTATTTTGAATTTGAATGCAAATGTCCGAAGGTGTCCATAAAAAGTGC</left_flank>
        <right_flank>GACCTCTCCAAGGACCAAGATTACTTCAAGTAACCTAAATCTTTGTAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACAGAATATTCGAACTTGACTCATGATTTTGTGATTCGAATAAAAGGTCTTTGAAAATCAAGATCGCACGATATTTTTGTATCTGGTGCAATTTTATTCGAAATAACGGTAAAACTTTACTACACATGTTCTCTTTTCAAAAATGAAACAAAAATTCATATTTTCACCAGGAAGGAAACAAGTTAGAATTTTAGTGTCCACATATAAAACGCTGAAAATAACAAGACCATTTCACTCCAGATCAAATCTAAGCATCATCTTCATCAAATATTGTTTTTCACCGAAATTCTTCGCCATTTGGGTGGTACCAAGTGGGAAAAATTTGAATGCATGCTACTGTACTTCAAAAATTGTTGTCCCAACAACAAGTTTAGAATTGAGTCTTACAAGGAACATGACAAGTCTTGTTTTAAACTTCGAAATGAATATGAATAAAAAATCAAAAACTTTATTTTGAATTTGAATGCAAATGTCCGAAGGTGTCCATAAAAAGTGCGGACCTCTCCAAGGACCAAGATTACTTCAAGTAACCTAAATCTTTGTAAAGAGTCAAATGTACTTTCATTCAACTTGGAAAATCCCGTCTTTTCTGCGTGGCAGAGATCGTATACATAATTTTCTCTACTCCACTCCATTCACTTTTTTTTATTCAAGAACAGCACCGCATCATCGACAATTGGTTCCGTTCTTACAGCGGGAACATTTTCGTATGTCCACTTGTCCGCTTTTTCGCAACTCACTATGTTCTATAAATAGTCTTGTAGTTTCACCATATTTTTAAAACGTTCCCAGTAAAATTTTTATTGCTTCTGGTTGGATAGAATTGAATCTTTGATTTTCTATCAGTCACCTTTTCATTCTTTCCTGGCATTGGATAGCAAGATCATGAGAGGTGAGAGACGATTTTTGTTGGTGAGAGGTGAAACAGAAACCAGGAAGAGGAGTGATGAGAGAGGGAAATGGAGGGTGTCTGTTTCTGTTTCTCTGGCGCTCTCTC</canonical>
            <polymorphic>AAAACAGAATATTCGAACTTGACTCATGATTTTGTGATTCGAATAAAAGGTCTTTGAAAATCAAGATCGCACGATATTTTTGTATCTGGTGCAATTTTATTCGAAATAACGGTAAAACTTTACTACACATGTTCTCTTTTCAAAAATGAAACAAAAATTCATATTTTCACCAGGAAGGAAACAAGTTAGAATTTTAGTGTCCACATATAAAACGCTGAAAATAACAAGACCATTTCACTCCAGATCAAATCTAAGCATCATCTTCATCAAATATTGTTTTTCACCGAAATTCTTCGCCATTTGGGTGGTACCAAGTGGGAAAAATTTGAATGCATGCTACTGTACTTCAAAAATTGTTGTCCCAACAACAAGTTTAGAATTGAGTCTTACAAGGAACATGACAAGTCTTGTTTTAAACTTCGAAATGAATATGAATAAAAAATCAAAAACTTTATTTTGAATTTGAATGCAAATGTCCGAAGGTGTCCATAAAAAGTGCRGACCTCTCCAAGGACCAAGATTACTTCAAGTAACCTAAATCTTTGTAAAGAGTCAAATGTACTTTCATTCAACTTGGAAAATCCCGTCTTTTCTGCGTGGCAGAGATCGTATACATAATTTTCTCTACTCCACTCCATTCACTTTTTTTTATTCAAGAACAGCACCGCATCATCGACAATTGGTTCCGTTCTTACAGCGGGAACATTTTCGTATGTCCACTTGTCCGCTTTTTCGCAACTCACTATGTTCTATAAATAGTCTTGTAGTTTCACCATATTTTTAAAACGTTCCCAGTAAAATTTTTATTGCTTCTGGTTGGATAGAATTGAATCTTTGATTTTCTATCAGTCACCTTTTCATTCTTTCCTGGCATTGGATAGCAAGATCATGAGAGGTGAGAGACGATTTTTGTTGGTGAGAGGTGAAACAGAAACCAGGAAGAGGAGTGATGAGAGAGGGAAATGGAGGGTGTCTGTTTCTGTTTCTCTGGCGCTCTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>500 488 12</canonical_bands>
                <polymorphic_bands>512 488</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 488 12</canonical_bands>
                <polymorphic_bands>512 488</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTACTTCAAAAATTGTTGTCC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCCAAGTTGAATGAAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTGTACTTCAAAAATTGTTGTCCCAACAACAAGTTTAGAATTGAGTCTTACAAGGAACATGACAAGTCTTGTTTTAAACTTCGAAATGAATATGAATAAAAAATCAAAAACTTTATTTTGAATTTGAATGCAAATGTCCGAAGGTGTCCATAAAAAGTGCGGACCTCTCCAAGGACCAAGATTACTTCAAGTAACCTAAATCTTTGTAAAGAGTCAAATGTACTTTCATTCAACTTGGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CTGTACTTCAAAAATTGTTGTCCCAACAACAAGTTTAGAATTGAGTCTTACAAGGAACATGACAAGTCTTGTTTTAAACTTCGAAATGAATATGAATAAAAAATCAAAAACTTTATTTTGAATTTGAATGCAAATGTCCGAAGGTGTCCATAAAAAGTGCRGACCTCTCCAAGGACCAAGATTACTTCAAGTAACCTAAATCTTTGTAAAGAGTCAAATGTACTTTCATTCAACTTGGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28222</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>367080</contig_pos>
        <strand>+</strand>
        <context>AAAGTGCRGA[C/T]CTCTCCAAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTTTGAATTTGAATGCAAATGTCCGAAGGTGTCCATAAAAAGTGCGGA</left_flank>
        <right_flank>CTCTCCAAGGACCAAGATTACTTCAAGTAACCTAAATCTTTGTAAAGAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGAATATTCGAACTTGACTCATGATTTTGTGATTCGAATAAAAGGTCTTTGAAAATCAAGATCGCACGATATTTTTGTATCTGGTGCAATTTTATTCGAAATAACGGTAAAACTTTACTACACATGTTCTCTTTTCAAAAATGAAACAAAAATTCATATTTTCACCAGGAAGGAAACAAGTTAGAATTTTAGTGTCCACATATAAAACGCTGAAAATAACAAGACCATTTCACTCCAGATCAAATCTAAGCATCATCTTCATCAAATATTGTTTTTCACCGAAATTCTTCGCCATTTGGGTGGTACCAAGTGGGAAAAATTTGAATGCATGCTACTGTACTTCAAAAATTGTTGTCCCAACAACAAGTTTAGAATTGAGTCTTACAAGGAACATGACAAGTCTTGTTTTAAACTTCGAAATGAATATGAATAAAAAATCAAAAACTTTATTTTGAATTTGAATGCAAATGTCCGAAGGTGTCCATAAAAAGTGCGGACCTCTCCAAGGACCAAGATTACTTCAAGTAACCTAAATCTTTGTAAAGAGTCAAATGTACTTTCATTCAACTTGGAAAATCCCGTCTTTTCTGCGTGGCAGAGATCGTATACATAATTTTCTCTACTCCACTCCATTCACTTTTTTTTATTCAAGAACAGCACCGCATCATCGACAATTGGTTCCGTTCTTACAGCGGGAACATTTTCGTATGTCCACTTGTCCGCTTTTTCGCAACTCACTATGTTCTATAAATAGTCTTGTAGTTTCACCATATTTTTAAAACGTTCCCAGTAAAATTTTTATTGCTTCTGGTTGGATAGAATTGAATCTTTGATTTTCTATCAGTCACCTTTTCATTCTTTCCTGGCATTGGATAGCAAGATCATGAGAGGTGAGAGACGATTTTTGTTGGTGAGAGGTGAAACAGAAACCAGGAAGAGGAGTGATGAGAGAGGGAAATGGAGGGTGTCTGTTTCTGTTTCTCTGGCGCTCTCTCAAA</canonical>
            <polymorphic>ACAGAATATTCGAACTTGACTCATGATTTTGTGATTCGAATAAAAGGTCTTTGAAAATCAAGATCGCACGATATTTTTGTATCTGGTGCAATTTTATTCGAAATAACGGTAAAACTTTACTACACATGTTCTCTTTTCAAAAATGAAACAAAAATTCATATTTTCACCAGGAAGGAAACAAGTTAGAATTTTAGTGTCCACATATAAAACGCTGAAAATAACAAGACCATTTCACTCCAGATCAAATCTAAGCATCATCTTCATCAAATATTGTTTTTCACCGAAATTCTTCGCCATTTGGGTGGTACCAAGTGGGAAAAATTTGAATGCATGCTACTGTACTTCAAAAATTGTTGTCCCAACAACAAGTTTAGAATTGAGTCTTACAAGGAACATGACAAGTCTTGTTTTAAACTTCGAAATGAATATGAATAAAAAATCAAAAACTTTATTTTGAATTTGAATGCAAATGTCCGAAGGTGTCCATAAAAAGTGCGGAYCTCTCCAAGGACCAAGATTACTTCAAGTAACCTAAATCTTTGTAAAGAGTCAAATGTACTTTCATTCAACTTGGAAAATCCCGTCTTTTCTGCGTGGCAGAGATCGTATACATAATTTTCTCTACTCCACTCCATTCACTTTTTTTTATTCAAGAACAGCACCGCATCATCGACAATTGGTTCCGTTCTTACAGCGGGAACATTTTCGTATGTCCACTTGTCCGCTTTTTCGCAACTCACTATGTTCTATAAATAGTCTTGTAGTTTCACCATATTTTTAAAACGTTCCCAGTAAAATTTTTATTGCTTCTGGTTGGATAGAATTGAATCTTTGATTTTCTATCAGTCACCTTTTCATTCTTTCCTGGCATTGGATAGCAAGATCATGAGAGGTGAGAGACGATTTTTGTTGGTGAGAGGTGAAACAGAAACCAGGAAGAGGAGTGATGAGAGAGGGAAATGGAGGGTGTCTGTTTCTGTTTCTCTGGCGCTCTCTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>497 491 12</canonical_bands>
                <polymorphic_bands>509 491</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>497 491 12</canonical_bands>
                <polymorphic_bands>509 491</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>506 364 68 62</canonical_bands>
                <polymorphic_bands>870 68 62</polymorphic_bands>
            </assay>
            <assay>
                <site>CCTNNNNNAGG</site>
                <isoschizomers>
                    <enzyme>BstENI</enzyme>
                    <enzyme>EcoNI</enzyme>
                    <enzyme>XagI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTACTTCAAAAATTGTTGTCC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCCAAGTTGAATGAAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTGTACTTCAAAAATTGTTGTCCCAACAACAAGTTTAGAATTGAGTCTTACAAGGAACATGACAAGTCTTGTTTTAAACTTCGAAATGAATATGAATAAAAAATCAAAAACTTTATTTTGAATTTGAATGCAAATGTCCGAAGGTGTCCATAAAAAGTGCGGACCTCTCCAAGGACCAAGATTACTTCAAGTAACCTAAATCTTTGTAAAGAGTCAAATGTACTTTCATTCAACTTGGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CTGTACTTCAAAAATTGTTGTCCCAACAACAAGTTTAGAATTGAGTCTTACAAGGAACATGACAAGTCTTGTTTTAAACTTCGAAATGAATATGAATAAAAAATCAAAAACTTTATTTTGAATTTGAATGCAAATGTCCGAAGGTGTCCATAAAAAGTGCGGAYCTCTCCAAGGACCAAGATTACTTCAAGTAACCTAAATCTTTGTAAAGAGTCAAATGTACTTTCATTCAACTTGGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28223</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>371181</contig_pos>
        <strand>+</strand>
        <context>TTCAAAAAAG[A/G]TTTTTTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTTTTCTCCTTTTAAGTGGACAGTTTTTCATTTGATCATTCAAAAAAG</left_flank>
        <right_flank>TTTTTTTTCAGAGGAATCAAAGAATGGAGTTTTTTGGCCAACTTTTTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGTGGCTGATGAGGAGACAGGCTTGAACCCCCAGATAAATGGAGAACAAATATTTAATTATTTCGATGAAGTCCCAGAGCAGCAGAATGATCAGATAAAGGAAAAAATGCCACCAAGCGTCCGCCCAGTCAACGGTGAAATGGAAATCCCAGTGAAAGTGGAGTCGATCGAGGAGGAAGAGAATAATATGCAACTAATCGTGTTCGATGTTATTCAAGAGGATGTGCCTCAGGATACTGAAGCTATGGGGCCCGTGTCAATCGTGAGAAAACAAACGGAATTCAATGATCTGCAACCATATCTTGGGGACATTGTTGGATTAACCGAGATTGGGTTTGCGAAGAAGACCGAAATGACAGCTAATAAGAGAAAGCTGGGTGGGGATCGCATGGATAATCTAATTCTCCCGTTCAACTGCTCCATGGGTTGGCCAACGTGGTCGGTAAGTGTTTTTTCTCCTTTTAAGTGGACAGTTTTTCATTTGATCATTCAAAAAAGTTTTTTTTTCAGAGGAATCAAAGAATGGAGTTTTTTGGCCAACTTTTTTCTCCAGAAACGACCAAAAAACTCATAGAGAAAGTCAAGGCCGGATATGTTCTCACTATGTTTCAAAAAGATCAGACGAGATACTTCAAAAACTTGAACTAAGGTACACCAATTATCAATTGGGATCAATTTCTCATGATTTGTGAGGAACTTGATAAAATCAAGAGATTTCATTCCTAAGCTCATCATATAAGATTATCTTCTTTCTCCTTTTACCTCGAAACATGCCCAGACTTCCGTTGTTTCCAATCCCCTCATCGCTGTTCACTTTTTTGTTCCATCCGTATTGTTTTCTTTCATTCCCATTTCATTATTTTGCCCAGAAACATATTTACACTCTGAGTATATTTAATCAAACACCTATTTAAATTTTTCCATGATTGAGGATTCAAATGAATATGGTTTTTAGCGAAATTTTTATTTTAAAGACAGTATTCAAACAGGACAAAATTT</canonical>
            <polymorphic>ACGTGGCTGATGAGGAGACAGGCTTGAACCCCCAGATAAATGGAGAACAAATATTTAATTATTTCGATGAAGTCCCAGAGCAGCAGAATGATCAGATAAAGGAAAAAATGCCACCAAGCGTCCGCCCAGTCAACGGTGAAATGGAAATCCCAGTGAAAGTGGAGTCGATCGAGGAGGAAGAGAATAATATGCAACTAATCGTGTTCGATGTTATTCAAGAGGATGTGCCTCAGGATACTGAAGCTATGGGGCCCGTGTCAATCGTGAGAAAACAAACGGAATTCAATGATCTGCAACCATATCTTGGGGACATTGTTGGATTAACCGAGATTGGGTTTGCGAAGAAGACCGAAATGACAGCTAATAAGAGAAAGCTGGGTGGGGATCGCATGGATAATCTAATTCTCCCGTTCAACTGCTCCATGGGTTGGCCAACGTGGTCGGTAAGTGTTTTTTCTCCTTTTAAGTGGACAGTTTTTCATTTGATCATTCAAAAAAGRTTTTTTTTCAGAGGAATCAAAGAATGGAGTTTTTTGGCCAACTTTTTTCTCCAGAAACGACCAAAAAACTCATAGAGAAAGTCAAGGCCGGATATGTTCTCACTATGTTTCAAAAAGATCAGACGAGATACTTCAAAAACTTGAACTAAGGTACACCAATTATCAATTGGGATCAATTTCTCATGATTTGTGAGGAACTTGATAAAATCAAGAGATTTCATTCCTAAGCTCATCATATAAGATTATCTTCTTTCTCCTTTTACCTCGAAACATGCCCAGACTTCCGTTGTTTCCAATCCCCTCATCGCTGTTCACTTTTTTGTTCCATCCGTATTGTTTTCTTTCATTCCCATTTCATTATTTTGCCCAGAAACATATTTACACTCTGAGTATATTTAATCAAACACCTATTTAAATTTTTCCATGATTGAGGATTCAAATGAATATGGTTTTTAGCGAAATTTTTATTTTAAAGACAGTATTCAAACAGGACAAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCGCATGGATAATCTAATTC</pcr_primer_p1>
		<pcr_primer_p2>GTATCTCGTCTGATCTTTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATCGCATGGATAATCTAATTCTCCCGTTCAACTGCTCCATGGGTTGGCCAACGTGGTCGGTAAGTGTTTTTTCTCCTTTTAAGTGGACAGTTTTTCATTTGATCATTCAAAAAAGTTTTTTTTTCAGAGGAATCAAAGAATGGAGTTTTTTGGCCAACTTTTTTCTCCAGAAACGACCAAAAAACTCATAGAGAAAGTCAAGGCCGGATATGTTCTCACTATGTTTCAAAAAGATCAGACGAGATAC</canonical_amplicon>
		<polymorphic_amplicon>GATCGCATGGATAATCTAATTCTCCCGTTCAACTGCTCCATGGGTTGGCCAACGTGGTCGGTAAGTGTTTTTTCTCCTTTTAAGTGGACAGTTTTTCATTTGATCATTCAAAAAAGRTTTTTTTTCAGAGGAATCAAAGAATGGAGTTTTTTGGCCAACTTTTTTCTCCAGAAACGACCAAAAAACTCATAGAGAAAGTCAAGGCCGGATATGTTCTCACTATGTTTCAAAAAGATCAGACGAGATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28224</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>418707</contig_pos>
        <strand>+</strand>
        <context>ATGCATTTTT[C/G]TCTGTCTAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTGGAGACATGGATTGATGCTCTGTTGGCGCTAATGCTATGCATTTTT</left_flank>
        <right_flank>TCTGTCTAAAGCCGATAATCCGTGATTAGTTCTCCTGAACGGATTGGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACTCGAAAATCAATAGTAGAGCGCAATGAGCACCGAAATTCAAATGGAAGAAAAAAAAGAGAAAGAGTGAATGCATCGAAAAAATGGTGGAGCAGTTGGGAAAAAAATATATATAAAAGACTGGTGTGCAGAAAGTTCTGAATGGTCGTTTGCTAAGAGAGTCCTCATCCAAATCAGACAAAAGTTGCAAGATTTAAGATTACAAAATTTCTCACTTCGACACGGAAATTGAAGCAGAGAACCAAAAGGTTTGGAACTTTTAGAAACTTTCAAAAACCACTTCGCCAAACTAGTTTTCTTCCTCCTTCTTCTCCTTCCAAGAGCTCTTTTCAAAATACAACACTACCAAAAAGCAAGGAGAGAGGGAACAAAACAAAAACATGGCATAACATGGCACATTTCATGTTTTTGTCGTGGTGAAGTGGACAATTTTCCTGAGCCGATGGGTTTTGGAGACATGGATTGATGCTCTGTTGGCGCTAATGCTATGCATTTTTGTCTGTCTAAAGCCGATAATCCGTGATTAGTTCTCCTGAACGGATTGGAAGAAAGATATCTCTAAAAATGTCGCATTCTTTTTTTGTTGGTAGAAGGAATATTACAAAAATTATGTATTCCTCTTTAGAAGGAAAACATGTTTTTGACACGCGCAAAGATGTTTAGTTGTTTTTTCGTCTCTTTTTTTTAGACCTTTCTAACTGGGAAAGTGGAGAAATGTTCAAAAATGAAGTACAACAAAATATCTACAAGCAAAAATACAAATTCCACGTATTACTTATTCTAACGAAACCCCGATTTTTGAATGAACCAGCAGAATTGAGTTTTCAGGCTAGCATCACAAAAAATACCGCCTATTTATCACGAAAACTTGAAAAAATCTCTCGAAATAATATTATTCGATAATAAAAATCATCATTTTCTGGAAAAAAGCGGCGATAAACTTCAATATAGAGTACGCGAACAAGTGAAAATGAGTGAAAATGCAAACGAAAGTAGTG</canonical>
            <polymorphic>AGACTCGAAAATCAATAGTAGAGCGCAATGAGCACCGAAATTCAAATGGAAGAAAAAAAAGAGAAAGAGTGAATGCATCGAAAAAATGGTGGAGCAGTTGGGAAAAAAATATATATAAAAGACTGGTGTGCAGAAAGTTCTGAATGGTCGTTTGCTAAGAGAGTCCTCATCCAAATCAGACAAAAGTTGCAAGATTTAAGATTACAAAATTTCTCACTTCGACACGGAAATTGAAGCAGAGAACCAAAAGGTTTGGAACTTTTAGAAACTTTCAAAAACCACTTCGCCAAACTAGTTTTCTTCCTCCTTCTTCTCCTTCCAAGAGCTCTTTTCAAAATACAACACTACCAAAAAGCAAGGAGAGAGGGAACAAAACAAAAACATGGCATAACATGGCACATTTCATGTTTTTGTCGTGGTGAAGTGGACAATTTTCCTGAGCCGATGGGTTTTGGAGACATGGATTGATGCTCTGTTGGCGCTAATGCTATGCATTTTTSTCTGTCTAAAGCCGATAATCCGTGATTAGTTCTCCTGAACGGATTGGAAGAAAGATATCTCTAAAAATGTCGCATTCTTTTTTTGTTGGTAGAAGGAATATTACAAAAATTATGTATTCCTCTTTAGAAGGAAAACATGTTTTTGACACGCGCAAAGATGTTTAGTTGTTTTTTCGTCTCTTTTTTTTAGACCTTTCTAACTGGGAAAGTGGAGAAATGTTCAAAAATGAAGTACAACAAAATATCTACAAGCAAAAATACAAATTCCACGTATTACTTATTCTAACGAAACCCCGATTTTTGAATGAACCAGCAGAATTGAGTTTTCAGGCTAGCATCACAAAAAATACCGCCTATTTATCACGAAAACTTGAAAAAATCTCTCGAAATAATATTATTCGATAATAAAAATCATCATTTTCTGGAAAAAAGCGGCGATAAACTTCAATATAGAGTACGCGAACAAGTGAAAATGAGTGAAAATGCAAACGAAAGTAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAAAATACAACACTACCAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGAATGCGACATTTTTAGAGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTCAAAATACAACACTACCAAAAAGCAAGGAGAGAGGGAACAAAACAAAAACATGGCATAACATGGCACATTTCATGTTTTTGTCGTGGTGAAGTGGACAATTTTCCTGAGCCGATGGGTTTTGGAGACATGGATTGATGCTCTGTTGGCGCTAATGCTATGCATTTTTGTCTGTCTAAAGCCGATAATCCGTGATTAGTTCTCCTGAACGGATTGGAAGAAAGATATCTCTAAAAATGTCGCATTCT</canonical_amplicon>
		<polymorphic_amplicon>TTCAAAATACAACACTACCAAAAAGCAAGGAGAGAGGGAACAAAACAAAAACATGGCATAACATGGCACATTTCATGTTTTTGTCGTGGTGAAGTGGACAATTTTCCTGAGCCGATGGGTTTTGGAGACATGGATTGATGCTCTGTTGGCGCTAATGCTATGCATTTTTSTCTGTCTAAAGCCGATAATCCGTGATTAGTTCTCCTGAACGGATTGGAAGAAAGATATCTCTAAAAATGTCGCATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28225</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>460656</contig_pos>
        <strand>+</strand>
        <context>TTTGTTTTGG[C/T]TAATAGCACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGGGAGGAAGCATCATCTTGTTTCCCATGTCTTTTGTATTTGTTTTGG</left_flank>
        <right_flank>TAATAGCACATTAAGCTTGCCTGACCAAAGAAAAAGGTATCGAAGCGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAACACTTTTTGATAAACGAGCACACTGCTTCGTTGAGCACCATCACAAGTTGTTGATGAAGCAACTGGCGTCAGGGATGAAATTGGGATACGGTAATTTGACATCCGACAAGTGTATCTGGTCGTAAAGATTTGATTTTGTGGCATTTTGTTATTCCCCAGTCCGGATGAATTACAAATTAGATTTGTCTTTTTTTGTACTATATACTTCCTCCCGATCCATCTCTTTTACTTTTTTAGGTCGGAAAAGCAAAGTGTTTGTAGGTAATTGCGGTTGAGGGGTGAGAAATTGAAAGGGGTATTATGAGGTGAGCGATGATGTGCGTATTATGCAATCGTCGCCCTCGCCTTATATTTCCCTATTCAATTCGCGTCGGTGACCATCCAAGGCCAAAAAAAATGGTGGCGGGAAGAGACGGTGATCCCTCTTATGGGTGTCTTCTTTGGAATGGGAGGAAGCATCATCTTGTTTCCCATGTCTTTTGTATTTGTTTTGGCTAATAGCACATTAAGCTTGCCTGACCAAAGAAAAAGGTATCGAAGCGGAAAGTCCGCAGATGGATGTGGTGATAATTTTATGTTTTTTATTCAGTAGCCAGAGGCGTCAATGAGGGAAGGTTGGAAAAAAAAAACCTAAAGGCCATTAATTTGTATACATCTGCAGTTTCTGGTTAATCTTGATTTCCGATTCGAATTTCAAAAAAGGAATTTGTTCAAAACAAAGAGCTCTTTCAGAAAAATCCCTCTAAAAACAAAGAACTACTCTCCATTCTCATTGTCTCGTTTTTTACAAGCCCCTAGAGACCTTCATACCTCCTGGTCAGCACTTTTTTCGACCTCTTCTCAATATTGTCTCACTTTTTTCTCCTTCTGAAATCTAATCAACAAGGAAAACTACGAAGTAACCAGGCGTGTGGTCACTTTCTTGGCCTTTTGTCCACTCTCACTCGTTTTCTTCTTCATCTCACTCAATTCCCAATTTTGGCAACAAACACTGC</canonical>
            <polymorphic>TCCAACACTTTTTGATAAACGAGCACACTGCTTCGTTGAGCACCATCACAAGTTGTTGATGAAGCAACTGGCGTCAGGGATGAAATTGGGATACGGTAATTTGACATCCGACAAGTGTATCTGGTCGTAAAGATTTGATTTTGTGGCATTTTGTTATTCCCCAGTCCGGATGAATTACAAATTAGATTTGTCTTTTTTTGTACTATATACTTCCTCCCGATCCATCTCTTTTACTTTTTTAGGTCGGAAAAGCAAAGTGTTTGTAGGTAATTGCGGTTGAGGGGTGAGAAATTGAAAGGGGTATTATGAGGTGAGCGATGATGTGCGTATTATGCAATCGTCGCCCTCGCCTTATATTTCCCTATTCAATTCGCGTCGGTGACCATCCAAGGCCAAAAAAAATGGTGGCGGGAAGAGACGGTGATCCCTCTTATGGGTGTCTTCTTTGGAATGGGAGGAAGCATCATCTTGTTTCCCATGTCTTTTGTATTTGTTTTGGYTAATAGCACATTAAGCTTGCCTGACCAAAGAAAAAGGTATCGAAGCGGAAAGTCCGCAGATGGATGTGGTGATAATTTTATGTTTTTTATTCAGTAGCCAGAGGCGTCAATGAGGGAAGGTTGGAAAAAAAAAACCTAAAGGCCATTAATTTGTATACATCTGCAGTTTCTGGTTAATCTTGATTTCCGATTCGAATTTCAAAAAAGGAATTTGTTCAAAACAAAGAGCTCTTTCAGAAAAATCCCTCTAAAAACAAAGAACTACTCTCCATTCTCATTGTCTCGTTTTTTACAAGCCCCTAGAGACCTTCATACCTCCTGGTCAGCACTTTTTTCGACCTCTTCTCAATATTGTCTCACTTTTTTCTCCTTCTGAAATCTAATCAACAAGGAAAACTACGAAGTAACCAGGCGTGTGGTCACTTTCTTGGCCTTTTGTCCACTCTCACTCGTTTTCTTCTTCATCTCACTCAATTCCCAATTTTGGCAACAAACACTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>392 135 107 86 82 69 68 45 16</canonical_bands>
                <polymorphic_bands>392 135 123 86 82 69 68 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTCTTATGGGTGTCTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTAACCAGAAACTGCAGATGTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CCTCTTATGGGTGTCTTCTTTGGAATGGGAGGAAGCATCATCTTGTTTCCCATGTCTTTTGTATTTGTTTTGGCTAATAGCACATTAAGCTTGCCTGACCAAAGAAAAAGGTATCGAAGCGGAAAGTCCGCAGATGGATGTGGTGATAATTTTATGTTTTTTATTCAGTAGCCAGAGGCGTCAATGAGGGAAGGTTGGAAAAAAAAAACCTAAAGGCCATTAATTTGTATACATCTGCAGTTTCTGGTTAAT</canonical_amplicon>
		<polymorphic_amplicon>CCTCTTATGGGTGTCTTCTTTGGAATGGGAGGAAGCATCATCTTGTTTCCCATGTCTTTTGTATTTGTTTTGGYTAATAGCACATTAAGCTTGCCTGACCAAAGAAAAAGGTATCGAAGCGGAAAGTCCGCAGATGGATGTGGTGATAATTTTATGTTTTTTATTCAGTAGCCAGAGGCGTCAATGAGGGAAGGTTGGAAAAAAAAAACCTAAAGGCCATTAATTTGTATACATCTGCAGTTTCTGGTTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28226</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>528681</contig_pos>
        <strand>+</strand>
        <context>TACAAAGTTC[A/T]TTGGAATTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTAATGAAATTGGAGAAAAATTGGTTGTTCATCGAAAAAGTACAAAGTTC</left_flank>
        <right_flank>TTGGAATTCTTAATATGCCGTCTGTGGAGCCTTCTGAGGATGAGACTGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAAGAGAAAGTTCTGCATTCCAAGACTTAATCCCCATCCTCGAAATTTTGAAATTACAAAATTTTCGTAGAGAAATTTGTGAGGTACTCACTGAAGCCGTCGCATTGCAAACGGAGAAGGTGGAACATGTCACTAAACTGAAAATACTAACAGAGTCTGTCTGTGAAGCTGAGGTAGAGTTTTTCAATAAAGACGATGAATTTAAATTATCCAGAAGACTCTATGAAGAATGCCTGGACGATGGGAAAGTTTATTTCGAGTCGGAATATTATGCCAGTCTCGTGACAAATACCGAAAAACAAGTAGAACTGGCAAAGAAACTTGAACAAGGTCATGAAGAAGTTCTGCAAAAAACTGAGGATCTCAATATGCAATAAGAAGCGATGGATGAGATAATAAAGAAGATAACCGAAATCGAAAAAAACCTTCGTGAAAAACCAGGCTGAGCTAATGAAATTGGAGAAAAATTGGTTGTTCATCGAAAAAGTACAAAGTTCTTTGGAATTCTTAATATGCCGTCTGTGGAGCCTTCTGAGGATGAGACTGCACCAAAGAAAGCTCGAATGGAATCGGAAGAATGAACAACTTTGTGTGTGCGTCAATTATCAAATGATTTGTACCACTATGATTATTAACTTTGCAGGATTTGCGGTATCAAATCATTTACGTATTTCCCAAAACCCGACTTCAGCAATCAAATCCAAACTCAAATCATAAATTTTTATCGGTTTTCTCATTTTTCTGTATTTCTGAATACCATGTCAACCACATCTTATTAAGATAATTAGATTTTTGTTAAAATTGTCTTTCCCATCTTTCTCCTTCCTCAAAATTCACGTTTTCCCTTCGCAATGCAATTTTTTTCTAATTTCTACCAGTCGAAAATTTTTTTAATGTTCAGCTGAATTTTTAACACTGTCTTTTCAACTGAGTTTTTCTTTTGTCAATGATAATTTTTGAGGCTCGCAAGCTGTTTTAAAACTATGATGTTTCAGCAT</canonical>
            <polymorphic>GGAAAGAGAAAGTTCTGCATTCCAAGACTTAATCCCCATCCTCGAAATTTTGAAATTACAAAATTTTCGTAGAGAAATTTGTGAGGTACTCACTGAAGCCGTCGCATTGCAAACGGAGAAGGTGGAACATGTCACTAAACTGAAAATACTAACAGAGTCTGTCTGTGAAGCTGAGGTAGAGTTTTTCAATAAAGACGATGAATTTAAATTATCCAGAAGACTCTATGAAGAATGCCTGGACGATGGGAAAGTTTATTTCGAGTCGGAATATTATGCCAGTCTCGTGACAAATACCGAAAAACAAGTAGAACTGGCAAAGAAACTTGAACAAGGTCATGAAGAAGTTCTGCAAAAAACTGAGGATCTCAATATGCAATAAGAAGCGATGGATGAGATAATAAAGAAGATAACCGAAATCGAAAAAAACCTTCGTGAAAAACCAGGCTGAGCTAATGAAATTGGAGAAAAATTGGTTGTTCATCGAAAAAGTACAAAGTTCWTTGGAATTCTTAATATGCCGTCTGTGGAGCCTTCTGAGGATGAGACTGCACCAAAGAAAGCTCGAATGGAATCGGAAGAATGAACAACTTTGTGTGTGCGTCAATTATCAAATGATTTGTACCACTATGATTATTAACTTTGCAGGATTTGCGGTATCAAATCATTTACGTATTTCCCAAAACCCGACTTCAGCAATCAAATCCAAACTCAAATCATAAATTTTTATCGGTTTTCTCATTTTTCTGTATTTCTGAATACCATGTCAACCACATCTTATTAAGATAATTAGATTTTTGTTAAAATTGTCTTTCCCATCTTTCTCCTTCCTCAAAATTCACGTTTTCCCTTCGCAATGCAATTTTTTTCTAATTTCTACCAGTCGAAAATTTTTTTAATGTTCAGCTGAATTTTTAACACTGTCTTTTCAACTGAGTTTTTCTTTTGTCAATGATAATTTTTGAGGCTCGCAAGCTGTTTTAAAACTATGATGTTTCAGCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGATAACCGAAATCGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAAATCCTGCAAAGTTAATAATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGATAACCGAAATCGAAAAAAACCTTCGTGAAAAACCAGGCTGAGCTAATGAAATTGGAGAAAAATTGGTTGTTCATCGAAAAAGTACAAAGTTCTTTGGAATTCTTAATATGCCGTCTGTGGAGCCTTCTGAGGATGAGACTGCACCAAAGAAAGCTCGAATGGAATCGGAAGAATGAACAACTTTGTGTGTGCGTCAATTATCAAATGATTTGTACCACTATGATTATTAACTTTGCAGGATTTG</canonical_amplicon>
		<polymorphic_amplicon>AAGATAACCGAAATCGAAAAAAACCTTCGTGAAAAACCAGGCTGAGCTAATGAAATTGGAGAAAAATTGGTTGTTCATCGAAAAAGTACAAAGTTCWTTGGAATTCTTAATATGCCGTCTGTGGAGCCTTCTGAGGATGAGACTGCACCAAAGAAAGCTCGAATGGAATCGGAAGAATGAACAACTTTGTGTGTGCGTCAATTATCAAATGATTTGTACCACTATGATTATTAACTTTGCAGGATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28227</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>552702</contig_pos>
        <strand>+</strand>
        <context>CCATTCCTGT[G/T]CTTTGAATAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAATATATATTGAAAATATATCAAACACGAGAAGTGTGACCATTCCTGT</left_flank>
        <right_flank>CTTTGAATAGCCTTGTATAGAGAGTGGCTGTGGGAACATAAATGCATAGG</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAACCGCGCGCCAATTTATAAATGTCTGCGTCTCTTGAAATAAATTCATAACTTCGTTTCCTCCTCATTTCCTATTCCGTTGCTTTTGACGGGCGCCCATCAAATTTTGACGTTTGCGGTTTCTTGTTTTGTTTCTTGGTTCTTGTTTCTTGGATATTTAATTAAATTTGTTTCATTAAATAAATTAGTTTGCTAGGGAATTAATCAATACCACAAACTTTACAGTCTGTAAGTTTTTATCTAATGTTTCGGTCTGGAAATTGTTCTCAAAATTCTCCAAAAATGTAAAGCAAAGGAAAATGGAATTAGTCGGCTAAATTAAGAGATGACACTACTTCTTTTCTAGCGAATAACAACTTGAGCCACTATATTTCAGTCATATGAGAGAGCGTTAACGTGACATAAACTGACTCACCGGCAATGAATGAATCCAATATTCATAAAAGGAAATATATATTGAAAATATATCAAACACGAGAAGTGTGACCATTCCTGTTCTTTGAATAGCCTTGTATAGAGAGTGGCTGTGGGAACATAAATGCATAGGGTTGAGAAATAAAGCAGCTGATTTTCTATATTGAGTTTTGTTTTCGAATTCAATTATATAGTAAAGGTGAAAAAGAATCAGAAGTTTTTCGTTTTTATTTTGTTACTTGAAAATTTTTCAGTCATGTCTTCGAAAAAGGTTTCACTATTTTTATTTTCAAAAATTCAAAATATATTAATCTGATTTTTCAAAGATTTTAATCATATTTTAAATGTGTGAAATTTTTTTAAAAATCTAAAAAATCGTGCATTGAAAAGTTTAAATTTTAAATGTGTCTTAAAATTATTAAATGAAGTTGCGTATCAGAAAAAAAACTGTGAGACCAAATTTGATTTTCCATAATTTTTTGAAATTTTTTAAAATTAAAAATTTAAAAAATTTTTAATGAAAAATTTAATAATAAAATCGTTGGAAAATTGAAATTTAATTATGAATTTACAAAACAATTTG</canonical>
            <polymorphic>TTTGAACCGCGCGCCAATTTATAAATGTCTGCGTCTCTTGAAATAAATTCATAACTTCGTTTCCTCCTCATTTCCTATTCCGTTGCTTTTGACGGGCGCCCATCAAATTTTGACGTTTGCGGTTTCTTGTTTTGTTTCTTGGTTCTTGTTTCTTGGATATTTAATTAAATTTGTTTCATTAAATAAATTAGTTTGCTAGGGAATTAATCAATACCACAAACTTTACAGTCTGTAAGTTTTTATCTAATGTTTCGGTCTGGAAATTGTTCTCAAAATTCTCCAAAAATGTAAAGCAAAGGAAAATGGAATTAGTCGGCTAAATTAAGAGATGACACTACTTCTTTTCTAGCGAATAACAACTTGAGCCACTATATTTCAGTCATATGAGAGAGCGTTAACGTGACATAAACTGACTCACCGGCAATGAATGAATCCAATATTCATAAAAGGAAATATATATTGAAAATATATCAAACACGAGAAGTGTGACCATTCCTGTKCTTTGAATAGCCTTGTATAGAGAGTGGCTGTGGGAACATAAATGCATAGGGTTGAGAAATAAAGCAGCTGATTTTCTATATTGAGTTTTGTTTTCGAATTCAATTATATAGTAAAGGTGAAAAAGAATCAGAAGTTTTTCGTTTTTATTTTGTTACTTGAAAATTTTTCAGTCATGTCTTCGAAAAAGGTTTCACTATTTTTATTTTCAAAAATTCAAAATATATTAATCTGATTTTTCAAAGATTTTAATCATATTTTAAATGTGTGAAATTTTTTTAAAAATCTAAAAAATCGTGCATTGAAAAGTTTAAATTTTAAATGTGTCTTAAAATTATTAAATGAAGTTGCGTATCAGAAAAAAAACTGTGAGACCAAATTTGATTTTCCATAATTTTTTGAAATTTTTTAAAATTAAAAATTTAAAAAATTTTTAATGAAAAATTTAATAATAAAATCGTTGGAAAATTGAAATTTAATTATGAATTTACAAAACAATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACTTGAGCCACTATATTTCAG</pcr_primer_p1>
		<pcr_primer_p2>TAATTGAATTCGAAAACAAAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAACTTGAGCCACTATATTTCAGTCATATGAGAGAGCGTTAACGTGACATAAACTGACTCACCGGCAATGAATGAATCCAATATTCATAAAAGGAAATATATATTGAAAATATATCAAACACGAGAAGTGTGACCATTCCTGTTCTTTGAATAGCCTTGTATAGAGAGTGGCTGTGGGAACATAAATGCATAGGGTTGAGAAATAAAGCAGCTGATTTTCTATATTGAGTTTTGTTTTCGAATTCAATTA</canonical_amplicon>
		<polymorphic_amplicon>CAACTTGAGCCACTATATTTCAGTCATATGAGAGAGCGTTAACGTGACATAAACTGACTCACCGGCAATGAATGAATCCAATATTCATAAAAGGAAATATATATTGAAAATATATCAAACACGAGAAGTGTGACCATTCCTGTKCTTTGAATAGCCTTGTATAGAGAGTGGCTGTGGGAACATAAATGCATAGGGTTGAGAAATAAAGCAGCTGATTTTCTATATTGAGTTTTGTTTTCGAATTCAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28228</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>553174</contig_pos>
        <strand>+</strand>
        <context>GAAAATTGAA[A/G]TTTAATTATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAAAAATTTTTAATGAAAAATTTAATAATAAAATCGTTGGAAAATTGAA</left_flank>
        <right_flank>TTTAATTATGAATTTACAAAACAATTTGAATTATTAGTGCCAAAAAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACACGAGAAGTGTGACCATTCCTGTTCTTTGAATAGCCTTGTATAGAGAGTGGCTGTGGGAACATAAATGCATAGGGTTGAGAAATAAAGCAGCTGATTTTCTATATTGAGTTTTGTTTTCGAATTCAATTATATAGTAAAGGTGAAAAAGAATCAGAAGTTTTTCGTTTTTATTTTGTTACTTGAAAATTTTTCAGTCATGTCTTCGAAAAAGGTTTCACTATTTTTATTTTCAAAAATTCAAAATATATTAATCTGATTTTTCAAAGATTTTAATCATATTTTAAATGTGTGAAATTTTTTTAAAAATCTAAAAAATCGTGCATTGAAAAGTTTAAATTTTAAATGTGTCTTAAAATTATTAAATGAAGTTGCGTATCAGAAAAAAAACTGTGAGACCAAATTTGATTTTCCATAATTTTTTGAAATTTTTTAAAATTAAAAATTTAAAAAATTTTTAATGAAAAATTTAATAATAAAATCGTTGGAAAATTGAAATTTAATTATGAATTTACAAAACAATTTGAATTATTAGTGCCAAAAAAAATAAAAAATACCAAACCAAGAAATACTAAAAACGTAGAAACCAAAAATATCACGAAACCGCATAAACGACCAACGTCTTCGTCTCCGTTTATAAATAATTGCGTGTGGGACCAAGAAATGCAACACTACAACTTTGCCCTCAAAATGCAGAGACGGAAGACGGCTACTTATGTCTAATTCGAAAGAATTCTCCAACATTTTCACAAGAGAGAAAAAGAAAACTACGCATTTTGGAGAGCGAGAAAAGGAGAGTTCAAGGTTCGCAAAATATGAAATTTGAGAACTTGAAGCGATTTTTTTTTGAGTTGAAGGATTAGAGAAAAGTTATGTAGTCGGCCACTTTCTAATAAAAAAAACTGGTTACCGATTTCGCACGTGGATTTTTTGGGTGAACAACAACAACAACAACAACACTTCATTATGAGTGGAAAAGTCAGCGGAAGAACTAGCAC</canonical>
            <polymorphic>AAACACGAGAAGTGTGACCATTCCTGTTCTTTGAATAGCCTTGTATAGAGAGTGGCTGTGGGAACATAAATGCATAGGGTTGAGAAATAAAGCAGCTGATTTTCTATATTGAGTTTTGTTTTCGAATTCAATTATATAGTAAAGGTGAAAAAGAATCAGAAGTTTTTCGTTTTTATTTTGTTACTTGAAAATTTTTCAGTCATGTCTTCGAAAAAGGTTTCACTATTTTTATTTTCAAAAATTCAAAATATATTAATCTGATTTTTCAAAGATTTTAATCATATTTTAAATGTGTGAAATTTTTTTAAAAATCTAAAAAATCGTGCATTGAAAAGTTTAAATTTTAAATGTGTCTTAAAATTATTAAATGAAGTTGCGTATCAGAAAAAAAACTGTGAGACCAAATTTGATTTTCCATAATTTTTTGAAATTTTTTAAAATTAAAAATTTAAAAAATTTTTAATGAAAAATTTAATAATAAAATCGTTGGAAAATTGAARTTTAATTATGAATTTACAAAACAATTTGAATTATTAGTGCCAAAAAAAATAAAAAATACCAAACCAAGAAATACTAAAAACGTAGAAACCAAAAATATCACGAAACCGCATAAACGACCAACGTCTTCGTCTCCGTTTATAAATAATTGCGTGTGGGACCAAGAAATGCAACACTACAACTTTGCCCTCAAAATGCAGAGACGGAAGACGGCTACTTATGTCTAATTCGAAAGAATTCTCCAACATTTTCACAAGAGAGAAAAAGAAAACTACGCATTTTGGAGAGCGAGAAAAGGAGAGTTCAAGGTTCGCAAAATATGAAATTTGAGAACTTGAAGCGATTTTTTTTTGAGTTGAAGGATTAGAGAAAAGTTATGTAGTCGGCCACTTTCTAATAAAAAAAACTGGTTACCGATTTCGCACGTGGATTTTTTGGGTGAACAACAACAACAACAACAACACTTCATTATGAGTGGAAAAGTCAGCGGAAGAACTAGCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>223 179 124 88 65 64 58 50 42 30 25 17 14 12 9</canonical_bands>
                <polymorphic_bands>223 179 124 88 65 64 58 50 42 42 25 17 14 9</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>179 124 116 88 79 60 58 50 45 42 24 19 15 14 12 10 10 10 9 7 7 6 6 5 5</canonical_bands>
                <polymorphic_bands>179 124 116 88 79 60 58 50 45 42 24 19 15 14 12 11 10 10 10 9 7 7 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATTAAATGAAGTTGCGTATCA</pcr_primer_p1>
		<pcr_primer_p2>TTCGTGATATTTTTGGTTTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTATTAAATGAAGTTGCGTATCAGAAAAAAAACTGTGAGACCAAATTTGATTTTCCATAATTTTTTGAAATTTTTTAAAATTAAAAATTTAAAAAATTTTTAATGAAAAATTTAATAATAAAATCGTTGGAAAATTGAAATTTAATTATGAATTTACAAAACAATTTGAATTATTAGTGCCAAAAAAAATAAAAAATACCAAACCAAGAAATACTAAAAACGTAGAAACCAAAAATATCACGAA</canonical_amplicon>
		<polymorphic_amplicon>TTATTAAATGAAGTTGCGTATCAGAAAAAAAACTGTGAGACCAAATTTGATTTTCCATAATTTTTTGAAATTTTTTAAAATTAAAAATTTAAAAAATTTTTAATGAAAAATTTAATAATAAAATCGTTGGAAAATTGAARTTTAATTATGAATTTACAAAACAATTTGAATTATTAGTGCCAAAAAAAATAAAAAATACCAAACCAAGAAATACTAAAAACGTAGAAACCAAAAATATCACGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28229</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>630165</contig_pos>
        <strand>+</strand>
        <context>TCCAAACTAA[C/T]GTTGATGTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCAGTACAGTAACCCGAACATTATGAAAACACATACAGTTCCAAACTAA</left_flank>
        <right_flank>GTTGATGTTGCGTTTCACGGGGGTTTTCAGACTTTTTGAGACCACACGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTCCCAAAACCTTGATCCGACGGAAAATCGGAAAAGCGTTCTTTTTCGTCTCCTGTTATGTGTGTTCGAATCACTGCAAAATGTACAATTGGTGGGAGTAGTACTCACCACAGACGGATATTCTCTCCCATAGGGGCTTGTTTATTTGTTGTTGTGTGACTTGCAAAAGCCAAGCAGCTGATTCGTTCAAGCATGGAGGCATTGCTACTACTTGAGGATGACAACAACAAAAAACAAGGCGTCTCTTCTTTCCCCTGTCGTTTTGTAGTCGTCGGCATCAGGATGTTCGACGTGGAGACGGGGAACGCCCTGGACAACAAGAGAAAGTGACGAAAAGGGGACCTTCAAACATTTTTGACACAATTTGTTTTCAATTGAGAGATTTTTACAAATAGAGAAGTCAGATAAAAGCTTGTTTAATTCTGTGTTCAGAAGATCTAAGGATATCTCAGTACAGTAACCCGAACATTATGAAAACACATACAGTTCCAAACTAATGTTGATGTTGCGTTTCACGGGGGTTTTCAGACTTTTTGAGACCACACGAAATGAAAAATCTATGGGTTCAGAGAATTATAGTATTGTTGTAACATTTGAGATCTTCAGGAGTTCTGATTTCCCAAGGATTTCACAAGAGTAAACCTAAGATGTCGGTTATTTATCGTAAAATCTTTTACATAAAAAACCGCGAACTTCGACTCGATTTATCTGGTTCACTGTAACAATTAAAAATTCCAGAAAAATAAATTATTGATATTTTGGTCAACACTTGGTCAATTGTTAATTTTTTGATATTTTCCAAGCTGGCGAGAAAAATGACACAAAGTTTACGGTTAGAAGAAACTTCTATAATTACGGTAAGCCAATACGAATACTGAGCCCGTTCAGTGAGAAAATCCTTTCATATCCGATTCGGTCTACTTTGCAGAAAATTTCCGAATACTTAAAAATCTAACTCATAAATATTTCAAAGAATGTCTCGAAGAGCCATTTCATCC</canonical>
            <polymorphic>TACTCCCAAAACCTTGATCCGACGGAAAATCGGAAAAGCGTTCTTTTTCGTCTCCTGTTATGTGTGTTCGAATCACTGCAAAATGTACAATTGGTGGGAGTAGTACTCACCACAGACGGATATTCTCTCCCATAGGGGCTTGTTTATTTGTTGTTGTGTGACTTGCAAAAGCCAAGCAGCTGATTCGTTCAAGCATGGAGGCATTGCTACTACTTGAGGATGACAACAACAAAAAACAAGGCGTCTCTTCTTTCCCCTGTCGTTTTGTAGTCGTCGGCATCAGGATGTTCGACGTGGAGACGGGGAACGCCCTGGACAACAAGAGAAAGTGACGAAAAGGGGACCTTCAAACATTTTTGACACAATTTGTTTTCAATTGAGAGATTTTTACAAATAGAGAAGTCAGATAAAAGCTTGTTTAATTCTGTGTTCAGAAGATCTAAGGATATCTCAGTACAGTAACCCGAACATTATGAAAACACATACAGTTCCAAACTAAYGTTGATGTTGCGTTTCACGGGGGTTTTCAGACTTTTTGAGACCACACGAAATGAAAAATCTATGGGTTCAGAGAATTATAGTATTGTTGTAACATTTGAGATCTTCAGGAGTTCTGATTTCCCAAGGATTTCACAAGAGTAAACCTAAGATGTCGGTTATTTATCGTAAAATCTTTTACATAAAAAACCGCGAACTTCGACTCGATTTATCTGGTTCACTGTAACAATTAAAAATTCCAGAAAAATAAATTATTGATATTTTGGTCAACACTTGGTCAATTGTTAATTTTTTGATATTTTCCAAGCTGGCGAGAAAAATGACACAAAGTTTACGGTTAGAAGAAACTTCTATAATTACGGTAAGCCAATACGAATACTGAGCCCGTTCAGTGAGAAAATCCTTTCATATCCGATTCGGTCTACTTTGCAGAAAATTTCCGAATACTTAAAAATCTAACTCATAAATATTTCAAAGAATGTCTCGAAGAGCCATTTCATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGCTTGTTTAATTCTGTGTTC</pcr_primer_p1>
		<pcr_primer_p2>AACCGACATCTTAGGTTTACTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAGCTTGTTTAATTCTGTGTTCAGAAGATCTAAGGATATCTCAGTACAGTAACCCGAACATTATGAAAACACATACAGTTCCAAACTAATGTTGATGTTGCGTTTCACGGGGGTTTTCAGACTTTTTGAGACCACACGAAATGAAAAATCTATGGGTTCAGAGAATTATAGTATTGTTGTAACATTTGAGATCTTCAGGAGTTCTGATTTCCCAAGGATTTCACAAGAGTAAACCTAAGATGTCGGTT</canonical_amplicon>
		<polymorphic_amplicon>AAAGCTTGTTTAATTCTGTGTTCAGAAGATCTAAGGATATCTCAGTACAGTAACCCGAACATTATGAAAACACATACAGTTCCAAACTAAYGTTGATGTTGCGTTTCACGGGGGTTTTCAGACTTTTTGAGACCACACGAAATGAAAAATCTATGGGTTCAGAGAATTATAGTATTGTTGTAACATTTGAGATCTTCAGGAGTTCTGATTTCCCAAGGATTTCACAAGAGTAAACCTAAGATGTCGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28230</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>630651</contig_pos>
        <strand>+</strand>
        <context>AATGTCTCGA[A/C]GAGCCATTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCCGAATACTTAAAAATCTAACTCATAAATATTTCAAAGAATGTCTCGA</left_flank>
        <right_flank>GAGCCATTTCATCCAGGAATAGAACAAATTTGATCAGCAAAGATGACCCG</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTCCAAACTAATGTTGATGTTGCGTTTCACGGGGGTTTTCAGACTTTTTGAGACCACACGAAATGAAAAATCTATGGGTTCAGAGAATTATAGTATTGTTGTAACATTTGAGATCTTCAGGAGTTCTGATTTCCCAAGGATTTCACAAGAGTAAACCTAAGATGTCGGTTATTTATCGTAAAATCTTTTACATAAAAAACCGCGAACTTCGACTCGATTTATCTGGTTCACTGTAACAATTAAAAATTCCAGAAAAATAAATTATTGATATTTTGGTCAACACTTGGTCAATTGTTAATTTTTTGATATTTTCCAAGCTGGCGAGAAAAATGACACAAAGTTTACGGTTAGAAGAAACTTCTATAATTACGGTAAGCCAATACGAATACTGAGCCCGTTCAGTGAGAAAATCCTTTCATATCCGATTCGGTCTACTTTGCAGAAAATTTCCGAATACTTAAAAATCTAACTCATAAATATTTCAAAGAATGTCTCGAAGAGCCATTTCATCCAGGAATAGAACAAATTTGATCAGCAAAGATGACCCGATTCCCAGACGTAGATGAGTAGCAGCCAGCATGTTTTCTACTATTTCTAAAACACATTGACGCAATCTATCGTCATTATCAAGGCTTTCTGACGAATTCCCATTCTCATCTGCTTTTAACAGCTGCGGGAAAATTGAATCGAAGGACGGTTTGATGTACTATGTACTCACTTTCCTTGTTTAGACCAGTCCTTGTCATTTCTCCACTGGTGAAACCCACTTTAAAATGTGACAAAGGACAATTGACAGACATCGTCCGCTTCACATGATTCCACTTTGTCCTGCCTTGATGCAGCCACCACTGCCGACGTTTTTGTTTTTTGTCAGATGTCAGCGGTGGGACAGGAAATTGCAATGAAAGGAAGTGGGGCTTCCCTGTGGTGAGACGACGCGACGTATCTTACCATTTATAGCTATCAGTGGAATTATCGTTATCATCCGATCAATTTCC</canonical>
            <polymorphic>AGTTCCAAACTAATGTTGATGTTGCGTTTCACGGGGGTTTTCAGACTTTTTGAGACCACACGAAATGAAAAATCTATGGGTTCAGAGAATTATAGTATTGTTGTAACATTTGAGATCTTCAGGAGTTCTGATTTCCCAAGGATTTCACAAGAGTAAACCTAAGATGTCGGTTATTTATCGTAAAATCTTTTACATAAAAAACCGCGAACTTCGACTCGATTTATCTGGTTCACTGTAACAATTAAAAATTCCAGAAAAATAAATTATTGATATTTTGGTCAACACTTGGTCAATTGTTAATTTTTTGATATTTTCCAAGCTGGCGAGAAAAATGACACAAAGTTTACGGTTAGAAGAAACTTCTATAATTACGGTAAGCCAATACGAATACTGAGCCCGTTCAGTGAGAAAATCCTTTCATATCCGATTCGGTCTACTTTGCAGAAAATTTCCGAATACTTAAAAATCTAACTCATAAATATTTCAAAGAATGTCTCGAMGAGCCATTTCATCCAGGAATAGAACAAATTTGATCAGCAAAGATGACCCGATTCCCAGACGTAGATGAGTAGCAGCCAGCATGTTTTCTACTATTTCTAAAACACATTGACGCAATCTATCGTCATTATCAAGGCTTTCTGACGAATTCCCATTCTCATCTGCTTTTAACAGCTGCGGGAAAATTGAATCGAAGGACGGTTTGATGTACTATGTACTCACTTTCCTTGTTTAGACCAGTCCTTGTCATTTCTCCACTGGTGAAACCCACTTTAAAATGTGACAAAGGACAATTGACAGACATCGTCCGCTTCACATGATTCCACTTTGTCCTGCCTTGATGCAGCCACCACTGCCGACGTTTTTGTTTTTTGTCAGATGTCAGCGGTGGGACAGGAAATTGCAATGAAAGGAAGTGGGGCTTCCCTGTGGTGAGACGACGCGACGTATCTTACCATTTATAGCTATCAGTGGAATTATCGTTATCATCCGATCAATTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAGTGAGAAAATCCTTTCATA</pcr_primer_p1>
		<pcr_primer_p2>GTCAGAAAGCCTTGATAATGAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTCAGTGAGAAAATCCTTTCATATCCGATTCGGTCTACTTTGCAGAAAATTTCCGAATACTTAAAAATCTAACTCATAAATATTTCAAAGAATGTCTCGAAGAGCCATTTCATCCAGGAATAGAACAAATTTGATCAGCAAAGATGACCCGATTCCCAGACGTAGATGAGTAGCAGCCAGCATGTTTTCTACTATTTCTAAAACACATTGACGCAATCTATCGTCATTATCAAGGCTTTCTGAC</canonical_amplicon>
		<polymorphic_amplicon>TTCAGTGAGAAAATCCTTTCATATCCGATTCGGTCTACTTTGCAGAAAATTTCCGAATACTTAAAAATCTAACTCATAAATATTTCAAAGAATGTCTCGAMGAGCCATTTCATCCAGGAATAGAACAAATTTGATCAGCAAAGATGACCCGATTCCCAGACGTAGATGAGTAGCAGCCAGCATGTTTTCTACTATTTCTAAAACACATTGACGCAATCTATCGTCATTATCAAGGCTTTCTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28231</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>734549</contig_pos>
        <strand>+</strand>
        <context>CAAAATATCA[G/T]GTTCCTGTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAATCCGCCATCGATTGAATAAGTAATTTCTGAATATAAACAAAATATCA</left_flank>
        <right_flank>GTTCCTGTTAAAATGCCACACTTCGCGACTCGTCGAGTAGTGGAAACAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCCAGCTGGCTTTCTCTTCAAATTTTCTGAGATATTCTTTATCCATATTCGAAAAACTGAATCCCAATTAATAAAACTTTCTTTGAGAACAACAAAAAAGTCTTGTCGTGTGGGTGGCGAAGGAATTCAAAGCGACCATTTTTTGATAACTCTCTTCATGTGTCTCCATGAAAATGTGTGCGTGAGGAACCAAGTTTTATGCAGGGACCAGGAAAAAAAATTGGTGAAAAATTAATGTCAAACTGACATCAACACATCAATATAGGCGGATACTTTTTCAGGAACTTACACTTTTTTCCATTTTTATCCAGGCTCTTAGAGTTTAAGACTTTTTTTTTTGAAAACAGGTGGTGAATAAAATATTTCTCATATTTTTAAAATTTATAATGTTGTTTTTTACTAGTGTTGCTGAGCATCGTTTCACTTAGAAAAATACTCTCAACTATAGAATCCGCCATCGATTGAATAAGTAATTTCTGAATATAAACAAAATATCAGGTTCCTGTTAAAATGCCACACTTCGCGACTCGTCGAGTAGTGGAAACAATGCCGTCCGGAACGTGGAATGACTTCACCGATCTCCCAGCGGAATACGCGTCTCAGATAGCTGCGGTCCATCAGTTGCCACGATGTTATCACTCAATGAATTTTGTATATTTCGCAACAACTGTAAGTTTTTCTTTTCATATTATATTGTAAGTAAATATAATTATTTAAATCATAGCCTAAAAATCATCCACTGAACAATTGAAATCGGTTACTGGAAAAATTTTTATGCTGTGTTTGCAAGATTCTCAGCTTGTGAAAAATCTTGAAAACCAACATTTCTCAAAATCCGGAGTAATAAAAAATCTCGGAATTTGTGAAACGGAGGCCGAAGAGATTTCTTACCTTTCTGTACTCTAGTTGTCTATTATGTTTTGTTTAACTGAGCATAATGGTACAAAAAGTCTAATTTTTATTAAAGTAAGTATGACAGTAAATTAGTATCTGTGGAA</canonical>
            <polymorphic>TTTCCAGCTGGCTTTCTCTTCAAATTTTCTGAGATATTCTTTATCCATATTCGAAAAACTGAATCCCAATTAATAAAACTTTCTTTGAGAACAACAAAAAAGTCTTGTCGTGTGGGTGGCGAAGGAATTCAAAGCGACCATTTTTTGATAACTCTCTTCATGTGTCTCCATGAAAATGTGTGCGTGAGGAACCAAGTTTTATGCAGGGACCAGGAAAAAAAATTGGTGAAAAATTAATGTCAAACTGACATCAACACATCAATATAGGCGGATACTTTTTCAGGAACTTACACTTTTTTCCATTTTTATCCAGGCTCTTAGAGTTTAAGACTTTTTTTTTTGAAAACAGGTGGTGAATAAAATATTTCTCATATTTTTAAAATTTATAATGTTGTTTTTTACTAGTGTTGCTGAGCATCGTTTCACTTAGAAAAATACTCTCAACTATAGAATCCGCCATCGATTGAATAAGTAATTTCTGAATATAAACAAAATATCAKGTTCCTGTTAAAATGCCACACTTCGCGACTCGTCGAGTAGTGGAAACAATGCCGTCCGGAACGTGGAATGACTTCACCGATCTCCCAGCGGAATACGCGTCTCAGATAGCTGCGGTCCATCAGTTGCCACGATGTTATCACTCAATGAATTTTGTATATTTCGCAACAACTGTAAGTTTTTCTTTTCATATTATATTGTAAGTAAATATAATTATTTAAATCATAGCCTAAAAATCATCCACTGAACAATTGAAATCGGTTACTGGAAAAATTTTTATGCTGTGTTTGCAAGATTCTCAGCTTGTGAAAAATCTTGAAAACCAACATTTCTCAAAATCCGGAGTAATAAAAAATCTCGGAATTTGTGAAACGGAGGCCGAAGAGATTTCTTACCTTTCTGTACTCTAGTTGTCTATTATGTTTTGTTTAACTGAGCATAATGGTACAAAAAGTCTAATTTTTATTAAAGTAAGTATGACAGTAAATTAGTATCTGTGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>498 294 190 18</canonical_bands>
                <polymorphic_bands>792 190 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCATCGTTTCACTTAGAAAAATA</pcr_primer_p1>
		<pcr_primer_p2>GTTGCGAAATATACAAAATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GCATCGTTTCACTTAGAAAAATACTCTCAACTATAGAATCCGCCATCGATTGAATAAGTAATTTCTGAATATAAACAAAATATCAGGTTCCTGTTAAAATGCCACACTTCGCGACTCGTCGAGTAGTGGAAACAATGCCGTCCGGAACGTGGAATGACTTCACCGATCTCCCAGCGGAATACGCGTCTCAGATAGCTGCGGTCCATCAGTTGCCACGATGTTATCACTCAATGAATTTTGTATATTTCGCAAC</canonical_amplicon>
		<polymorphic_amplicon>GCATCGTTTCACTTAGAAAAATACTCTCAACTATAGAATCCGCCATCGATTGAATAAGTAATTTCTGAATATAAACAAAATATCAKGTTCCTGTTAAAATGCCACACTTCGCGACTCGTCGAGTAGTGGAAACAATGCCGTCCGGAACGTGGAATGACTTCACCGATCTCCCAGCGGAATACGCGTCTCAGATAGCTGCGGTCCATCAGTTGCCACGATGTTATCACTCAATGAATTTTGTATATTTCGCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28232</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>734572</contig_pos>
        <strand>+</strand>
        <context>ATGCCACACT[C/T]CGCGACTCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATTTCTGAATATAAACAAAATATCAGGTTCCTGTTAAAATGCCACACT</left_flank>
        <right_flank>CGCGACTCGTCGAGTAGTGGAAACAATGCCGTCCGGAACGTGGAATGACT</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTCTGAGATATTCTTTATCCATATTCGAAAAACTGAATCCCAATTAATAAAACTTTCTTTGAGAACAACAAAAAAGTCTTGTCGTGTGGGTGGCGAAGGAATTCAAAGCGACCATTTTTTGATAACTCTCTTCATGTGTCTCCATGAAAATGTGTGCGTGAGGAACCAAGTTTTATGCAGGGACCAGGAAAAAAAATTGGTGAAAAATTAATGTCAAACTGACATCAACACATCAATATAGGCGGATACTTTTTCAGGAACTTACACTTTTTTCCATTTTTATCCAGGCTCTTAGAGTTTAAGACTTTTTTTTTTGAAAACAGGTGGTGAATAAAATATTTCTCATATTTTTAAAATTTATAATGTTGTTTTTTACTAGTGTTGCTGAGCATCGTTTCACTTAGAAAAATACTCTCAACTATAGAATCCGCCATCGATTGAATAAGTAATTTCTGAATATAAACAAAATATCAGGTTCCTGTTAAAATGCCACACTTCGCGACTCGTCGAGTAGTGGAAACAATGCCGTCCGGAACGTGGAATGACTTCACCGATCTCCCAGCGGAATACGCGTCTCAGATAGCTGCGGTCCATCAGTTGCCACGATGTTATCACTCAATGAATTTTGTATATTTCGCAACAACTGTAAGTTTTTCTTTTCATATTATATTGTAAGTAAATATAATTATTTAAATCATAGCCTAAAAATCATCCACTGAACAATTGAAATCGGTTACTGGAAAAATTTTTATGCTGTGTTTGCAAGATTCTCAGCTTGTGAAAAATCTTGAAAACCAACATTTCTCAAAATCCGGAGTAATAAAAAATCTCGGAATTTGTGAAACGGAGGCCGAAGAGATTTCTTACCTTTCTGTACTCTAGTTGTCTATTATGTTTTGTTTAACTGAGCATAATGGTACAAAAAGTCTAATTTTTATTAAAGTAAGTATGACAGTAAATTAGTATCTGTGGAAAATGTATGATTTTACAGGAATAA</canonical>
            <polymorphic>ATTTTCTGAGATATTCTTTATCCATATTCGAAAAACTGAATCCCAATTAATAAAACTTTCTTTGAGAACAACAAAAAAGTCTTGTCGTGTGGGTGGCGAAGGAATTCAAAGCGACCATTTTTTGATAACTCTCTTCATGTGTCTCCATGAAAATGTGTGCGTGAGGAACCAAGTTTTATGCAGGGACCAGGAAAAAAAATTGGTGAAAAATTAATGTCAAACTGACATCAACACATCAATATAGGCGGATACTTTTTCAGGAACTTACACTTTTTTCCATTTTTATCCAGGCTCTTAGAGTTTAAGACTTTTTTTTTTGAAAACAGGTGGTGAATAAAATATTTCTCATATTTTTAAAATTTATAATGTTGTTTTTTACTAGTGTTGCTGAGCATCGTTTCACTTAGAAAAATACTCTCAACTATAGAATCCGCCATCGATTGAATAAGTAATTTCTGAATATAAACAAAATATCAGGTTCCTGTTAAAATGCCACACTYCGCGACTCGTCGAGTAGTGGAAACAATGCCGTCCGGAACGTGGAATGACTTCACCGATCTCCCAGCGGAATACGCGTCTCAGATAGCTGCGGTCCATCAGTTGCCACGATGTTATCACTCAATGAATTTTGTATATTTCGCAACAACTGTAAGTTTTTCTTTTCATATTATATTGTAAGTAAATATAATTATTTAAATCATAGCCTAAAAATCATCCACTGAACAATTGAAATCGGTTACTGGAAAAATTTTTATGCTGTGTTTGCAAGATTCTCAGCTTGTGAAAAATCTTGAAAACCAACATTTCTCAAAATCCGGAGTAATAAAAAATCTCGGAATTTGTGAAACGGAGGCCGAAGAGATTTCTTACCTTTCTGTACTCTAGTTGTCTATTATGTTTTGTTTAACTGAGCATAATGGTACAAAAAGTCTAATTTTTATTAAAGTAAGTATGACAGTAAATTAGTATCTGTGGAAAATGTATGATTTTACAGGAATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGCGA</site>
                <isoschizomers>
                    <enzyme>Bsp68I</enzyme>
                    <enzyme>NruI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>258 257 243 185 32 25</canonical_bands>
                <polymorphic_bands>275 258 257 185 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCATCGTTTCACTTAGAAAAATA</pcr_primer_p1>
		<pcr_primer_p2>GTTGCGAAATATACAAAATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GCATCGTTTCACTTAGAAAAATACTCTCAACTATAGAATCCGCCATCGATTGAATAAGTAATTTCTGAATATAAACAAAATATCAGGTTCCTGTTAAAATGCCACACTTCGCGACTCGTCGAGTAGTGGAAACAATGCCGTCCGGAACGTGGAATGACTTCACCGATCTCCCAGCGGAATACGCGTCTCAGATAGCTGCGGTCCATCAGTTGCCACGATGTTATCACTCAATGAATTTTGTATATTTCGCAAC</canonical_amplicon>
		<polymorphic_amplicon>GCATCGTTTCACTTAGAAAAATACTCTCAACTATAGAATCCGCCATCGATTGAATAAGTAATTTCTGAATATAAACAAAATATCAGGTTCCTGTTAAAATGCCACACTYCGCGACTCGTCGAGTAGTGGAAACAATGCCGTCCGGAACGTGGAATGACTTCACCGATCTCCCAGCGGAATACGCGTCTCAGATAGCTGCGGTCCATCAGTTGCCACGATGTTATCACTCAATGAATTTTGTATATTTCGCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28233</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>734589</contig_pos>
        <strand>+</strand>
        <context>TCGTCGAGTA[C/G]TGGAAACAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAAAATATCAGGTTCCTGTTAAAATGCCACACTTCGCGACTCGTCGAGTA</left_flank>
        <right_flank>TGGAAACAATGCCGTCCGGAACGTGGAATGACTTCACCGATCTCCCAGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATCCATATTCGAAAAACTGAATCCCAATTAATAAAACTTTCTTTGAGAACAACAAAAAAGTCTTGTCGTGTGGGTGGCGAAGGAATTCAAAGCGACCATTTTTTGATAACTCTCTTCATGTGTCTCCATGAAAATGTGTGCGTGAGGAACCAAGTTTTATGCAGGGACCAGGAAAAAAAATTGGTGAAAAATTAATGTCAAACTGACATCAACACATCAATATAGGCGGATACTTTTTCAGGAACTTACACTTTTTTCCATTTTTATCCAGGCTCTTAGAGTTTAAGACTTTTTTTTTTGAAAACAGGTGGTGAATAAAATATTTCTCATATTTTTAAAATTTATAATGTTGTTTTTTACTAGTGTTGCTGAGCATCGTTTCACTTAGAAAAATACTCTCAACTATAGAATCCGCCATCGATTGAATAAGTAATTTCTGAATATAAACAAAATATCAGGTTCCTGTTAAAATGCCACACTTCGCGACTCGTCGAGTAGTGGAAACAATGCCGTCCGGAACGTGGAATGACTTCACCGATCTCCCAGCGGAATACGCGTCTCAGATAGCTGCGGTCCATCAGTTGCCACGATGTTATCACTCAATGAATTTTGTATATTTCGCAACAACTGTAAGTTTTTCTTTTCATATTATATTGTAAGTAAATATAATTATTTAAATCATAGCCTAAAAATCATCCACTGAACAATTGAAATCGGTTACTGGAAAAATTTTTATGCTGTGTTTGCAAGATTCTCAGCTTGTGAAAAATCTTGAAAACCAACATTTCTCAAAATCCGGAGTAATAAAAAATCTCGGAATTTGTGAAACGGAGGCCGAAGAGATTTCTTACCTTTCTGTACTCTAGTTGTCTATTATGTTTTGTTTAACTGAGCATAATGGTACAAAAAGTCTAATTTTTATTAAAGTAAGTATGACAGTAAATTAGTATCTGTGGAAAATGTATGATTTTACAGGAATAATTTTCTTTCTGTTGAAA</canonical>
            <polymorphic>TTATCCATATTCGAAAAACTGAATCCCAATTAATAAAACTTTCTTTGAGAACAACAAAAAAGTCTTGTCGTGTGGGTGGCGAAGGAATTCAAAGCGACCATTTTTTGATAACTCTCTTCATGTGTCTCCATGAAAATGTGTGCGTGAGGAACCAAGTTTTATGCAGGGACCAGGAAAAAAAATTGGTGAAAAATTAATGTCAAACTGACATCAACACATCAATATAGGCGGATACTTTTTCAGGAACTTACACTTTTTTCCATTTTTATCCAGGCTCTTAGAGTTTAAGACTTTTTTTTTTGAAAACAGGTGGTGAATAAAATATTTCTCATATTTTTAAAATTTATAATGTTGTTTTTTACTAGTGTTGCTGAGCATCGTTTCACTTAGAAAAATACTCTCAACTATAGAATCCGCCATCGATTGAATAAGTAATTTCTGAATATAAACAAAATATCAGGTTCCTGTTAAAATGCCACACTTCGCGACTCGTCGAGTASTGGAAACAATGCCGTCCGGAACGTGGAATGACTTCACCGATCTCCCAGCGGAATACGCGTCTCAGATAGCTGCGGTCCATCAGTTGCCACGATGTTATCACTCAATGAATTTTGTATATTTCGCAACAACTGTAAGTTTTTCTTTTCATATTATATTGTAAGTAAATATAATTATTTAAATCATAGCCTAAAAATCATCCACTGAACAATTGAAATCGGTTACTGGAAAAATTTTTATGCTGTGTTTGCAAGATTCTCAGCTTGTGAAAAATCTTGAAAACCAACATTTCTCAAAATCCGGAGTAATAAAAAATCTCGGAATTTGTGAAACGGAGGCCGAAGAGATTTCTTACCTTTCTGTACTCTAGTTGTCTATTATGTTTTGTTTAACTGAGCATAATGGTACAAAAAGTCTAATTTTTATTAAAGTAAGTATGACAGTAAATTAGTATCTGTGGAAAATGTATGATTTTACAGGAATAATTTTCTTTCTGTTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>130 101 93 72 61 60 53 52 46 43 43 42 36 28 23 22 22 18 16 11 11 4 4 3 2 2 2</canonical_bands>
                <polymorphic_bands>130 101 93 72 61 60 53 52 46 45 43 43 42 36 28 22 18 16 11 11 4 4 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCATCGTTTCACTTAGAAAAATA</pcr_primer_p1>
		<pcr_primer_p2>GTTGCGAAATATACAAAATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GCATCGTTTCACTTAGAAAAATACTCTCAACTATAGAATCCGCCATCGATTGAATAAGTAATTTCTGAATATAAACAAAATATCAGGTTCCTGTTAAAATGCCACACTTCGCGACTCGTCGAGTAGTGGAAACAATGCCGTCCGGAACGTGGAATGACTTCACCGATCTCCCAGCGGAATACGCGTCTCAGATAGCTGCGGTCCATCAGTTGCCACGATGTTATCACTCAATGAATTTTGTATATTTCGCAAC</canonical_amplicon>
		<polymorphic_amplicon>GCATCGTTTCACTTAGAAAAATACTCTCAACTATAGAATCCGCCATCGATTGAATAAGTAATTTCTGAATATAAACAAAATATCAGGTTCCTGTTAAAATGCCACACTTCGCGACTCGTCGAGTASTGGAAACAATGCCGTCCGGAACGTGGAATGACTTCACCGATCTCCCAGCGGAATACGCGTCTCAGATAGCTGCGGTCCATCAGTTGCCACGATGTTATCACTCAATGAATTTTGTATATTTCGCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28234</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>734672</contig_pos>
        <strand>+</strand>
        <context>CGGTCCATCA[A/G]TTGCCACGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCACCGATCTCCCAGCGGAATACGCGTCTCAGATAGCTGCGGTCCATCA</left_flank>
        <right_flank>TTGCCACGATGTTATCACTCAATGAATTTTGTATATTTCGCAACAACTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAATTCAAAGCGACCATTTTTTGATAACTCTCTTCATGTGTCTCCATGAAAATGTGTGCGTGAGGAACCAAGTTTTATGCAGGGACCAGGAAAAAAAATTGGTGAAAAATTAATGTCAAACTGACATCAACACATCAATATAGGCGGATACTTTTTCAGGAACTTACACTTTTTTCCATTTTTATCCAGGCTCTTAGAGTTTAAGACTTTTTTTTTTGAAAACAGGTGGTGAATAAAATATTTCTCATATTTTTAAAATTTATAATGTTGTTTTTTACTAGTGTTGCTGAGCATCGTTTCACTTAGAAAAATACTCTCAACTATAGAATCCGCCATCGATTGAATAAGTAATTTCTGAATATAAACAAAATATCAGGTTCCTGTTAAAATGCCACACTTCGCGACTCGTCGAGTAGTGGAAACAATGCCGTCCGGAACGTGGAATGACTTCACCGATCTCCCAGCGGAATACGCGTCTCAGATAGCTGCGGTCCATCAGTTGCCACGATGTTATCACTCAATGAATTTTGTATATTTCGCAACAACTGTAAGTTTTTCTTTTCATATTATATTGTAAGTAAATATAATTATTTAAATCATAGCCTAAAAATCATCCACTGAACAATTGAAATCGGTTACTGGAAAAATTTTTATGCTGTGTTTGCAAGATTCTCAGCTTGTGAAAAATCTTGAAAACCAACATTTCTCAAAATCCGGAGTAATAAAAAATCTCGGAATTTGTGAAACGGAGGCCGAAGAGATTTCTTACCTTTCTGTACTCTAGTTGTCTATTATGTTTTGTTTAACTGAGCATAATGGTACAAAAAGTCTAATTTTTATTAAAGTAAGTATGACAGTAAATTAGTATCTGTGGAAAATGTATGATTTTACAGGAATAATTTTCTTTCTGTTGAAAGTTAAAACGTAGATTCCCCCGTTTAACTAATACGCGTTTCTTATTCAAGCTTTTAATATTCAAGCTTTTATTCAGCATAAGGA</canonical>
            <polymorphic>GGAATTCAAAGCGACCATTTTTTGATAACTCTCTTCATGTGTCTCCATGAAAATGTGTGCGTGAGGAACCAAGTTTTATGCAGGGACCAGGAAAAAAAATTGGTGAAAAATTAATGTCAAACTGACATCAACACATCAATATAGGCGGATACTTTTTCAGGAACTTACACTTTTTTCCATTTTTATCCAGGCTCTTAGAGTTTAAGACTTTTTTTTTTGAAAACAGGTGGTGAATAAAATATTTCTCATATTTTTAAAATTTATAATGTTGTTTTTTACTAGTGTTGCTGAGCATCGTTTCACTTAGAAAAATACTCTCAACTATAGAATCCGCCATCGATTGAATAAGTAATTTCTGAATATAAACAAAATATCAGGTTCCTGTTAAAATGCCACACTTCGCGACTCGTCGAGTAGTGGAAACAATGCCGTCCGGAACGTGGAATGACTTCACCGATCTCCCAGCGGAATACGCGTCTCAGATAGCTGCGGTCCATCARTTGCCACGATGTTATCACTCAATGAATTTTGTATATTTCGCAACAACTGTAAGTTTTTCTTTTCATATTATATTGTAAGTAAATATAATTATTTAAATCATAGCCTAAAAATCATCCACTGAACAATTGAAATCGGTTACTGGAAAAATTTTTATGCTGTGTTTGCAAGATTCTCAGCTTGTGAAAAATCTTGAAAACCAACATTTCTCAAAATCCGGAGTAATAAAAAATCTCGGAATTTGTGAAACGGAGGCCGAAGAGATTTCTTACCTTTCTGTACTCTAGTTGTCTATTATGTTTTGTTTAACTGAGCATAATGGTACAAAAAGTCTAATTTTTATTAAAGTAAGTATGACAGTAAATTAGTATCTGTGGAAAATGTATGATTTTACAGGAATAATTTTCTTTCTGTTGAAAGTTAAAACGTAGATTCCCCCGTTTAACTAATACGCGTTTCTTATTCAAGCTTTTAATATTCAAGCTTTTATTCAGCATAAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCATCGTTTCACTTAGAAAAATA</pcr_primer_p1>
		<pcr_primer_p2>AAACTTACAGTTGTTGCGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>GCATCGTTTCACTTAGAAAAATACTCTCAACTATAGAATCCGCCATCGATTGAATAAGTAATTTCTGAATATAAACAAAATATCAGGTTCCTGTTAAAATGCCACACTTCGCGACTCGTCGAGTAGTGGAAACAATGCCGTCCGGAACGTGGAATGACTTCACCGATCTCCCAGCGGAATACGCGTCTCAGATAGCTGCGGTCCATCAGTTGCCACGATGTTATCACTCAATGAATTTTGTATATTTCGCAACAACTGTAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>GCATCGTTTCACTTAGAAAAATACTCTCAACTATAGAATCCGCCATCGATTGAATAAGTAATTTCTGAATATAAACAAAATATCAGGTTCCTGTTAAAATGCCACACTTCGCGACTCGTCGAGTAGTGGAAACAATGCCGTCCGGAACGTGGAATGACTTCACCGATCTCCCAGCGGAATACGCGTCTCAGATAGCTGCGGTCCATCARTTGCCACGATGTTATCACTCAATGAATTTTGTATATTTCGCAACAACTGTAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28235</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>734743</contig_pos>
        <strand>+</strand>
        <context>TTTCATATTA[A/T]WTTGTAAGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATGAATTTTGTATATTTCGCAACAACTGTAAGTTTTTCTTTTCATATTA</left_flank>
        <right_flank>ATTGTAAGTAAATATAATTATTTAAATCATAGCCTAAAAATCATCCACTG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTTTATGCAGGGACCAGGAAAAAAAATTGGTGAAAAATTAATGTCAAACTGACATCAACACATCAATATAGGCGGATACTTTTTCAGGAACTTACACTTTTTTCCATTTTTATCCAGGCTCTTAGAGTTTAAGACTTTTTTTTTTGAAAACAGGTGGTGAATAAAATATTTCTCATATTTTTAAAATTTATAATGTTGTTTTTTACTAGTGTTGCTGAGCATCGTTTCACTTAGAAAAATACTCTCAACTATAGAATCCGCCATCGATTGAATAAGTAATTTCTGAATATAAACAAAATATCAGGTTCCTGTTAAAATGCCACACTTCGCGACTCGTCGAGTAGTGGAAACAATGCCGTCCGGAACGTGGAATGACTTCACCGATCTCCCAGCGGAATACGCGTCTCAGATAGCTGCGGTCCATCAGTTGCCACGATGTTATCACTCAATGAATTTTGTATATTTCGCAACAACTGTAAGTTTTTCTTTTCATATTATATTGTAAGTAAATATAATTATTTAAATCATAGCCTAAAAATCATCCACTGAACAATTGAAATCGGTTACTGGAAAAATTTTTATGCTGTGTTTGCAAGATTCTCAGCTTGTGAAAAATCTTGAAAACCAACATTTCTCAAAATCCGGAGTAATAAAAAATCTCGGAATTTGTGAAACGGAGGCCGAAGAGATTTCTTACCTTTCTGTACTCTAGTTGTCTATTATGTTTTGTTTAACTGAGCATAATGGTACAAAAAGTCTAATTTTTATTAAAGTAAGTATGACAGTAAATTAGTATCTGTGGAAAATGTATGATTTTACAGGAATAATTTTCTTTCTGTTGAAAGTTAAAACGTAGATTCCCCCGTTTAACTAATACGCGTTTCTTATTCAAGCTTTTAATATTCAAGCTTTTATTCAGCATAAGGAGAATTTGCAAAAATTCTGGTCGCAGAGAATTTTCGTCAAAACGAATGTTATCTGAAAACAAGAAATAAACC</canonical>
            <polymorphic>AGTTTTATGCAGGGACCAGGAAAAAAAATTGGTGAAAAATTAATGTCAAACTGACATCAACACATCAATATAGGCGGATACTTTTTCAGGAACTTACACTTTTTTCCATTTTTATCCAGGCTCTTAGAGTTTAAGACTTTTTTTTTTGAAAACAGGTGGTGAATAAAATATTTCTCATATTTTTAAAATTTATAATGTTGTTTTTTACTAGTGTTGCTGAGCATCGTTTCACTTAGAAAAATACTCTCAACTATAGAATCCGCCATCGATTGAATAAGTAATTTCTGAATATAAACAAAATATCAGGTTCCTGTTAAAATGCCACACTTCGCGACTCGTCGAGTAGTGGAAACAATGCCGTCCGGAACGTGGAATGACTTCACCGATCTCCCAGCGGAATACGCGTCTCAGATAGCTGCGGTCCATCAGTTGCCACGATGTTATCACTCAATGAATTTTGTATATTTCGCAACAACTGTAAGTTTTTCTTTTCATATTAWATTGTAAGTAAATATAATTATTTAAATCATAGCCTAAAAATCATCCACTGAACAATTGAAATCGGTTACTGGAAAAATTTTTATGCTGTGTTTGCAAGATTCTCAGCTTGTGAAAAATCTTGAAAACCAACATTTCTCAAAATCCGGAGTAATAAAAAATCTCGGAATTTGTGAAACGGAGGCCGAAGAGATTTCTTACCTTTCTGTACTCTAGTTGTCTATTATGTTTTGTTTAACTGAGCATAATGGTACAAAAAGTCTAATTTTTATTAAAGTAAGTATGACAGTAAATTAGTATCTGTGGAAAATGTATGATTTTACAGGAATAATTTTCTTTCTGTTGAAAGTTAAAACGTAGATTCCCCCGTTTAACTAATACGCGTTTCTTATTCAAGCTTTTAATATTCAAGCTTTTATTCAGCATAAGGAGAATTTGCAAAAATTCTGGTCGCAGAGAATTTTCGTCAAAACGAATGTTATCTGAAAACAAGAAATAAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAATACGCGTCTCAGATAG</pcr_primer_p1>
		<pcr_primer_p2>GATTTTGAGAAATGTTGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGAATACGCGTCTCAGATAGCTGCGGTCCATCAGTTGCCACGATGTTATCACTCAATGAATTTTGTATATTTCGCAACAACTGTAAGTTTTTCTTTTCATATTATATTGTAAGTAAATATAATTATTTAAATCATAGCCTAAAAATCATCCACTGAACAATTGAAATCGGTTACTGGAAAAATTTTTATGCTGTGTTTGCAAGATTCTCAGCTTGTGAAAAATCTTGAAAACCAACATTTCTCAAAATC</canonical_amplicon>
		<polymorphic_amplicon>GGAATACGCGTCTCAGATAGCTGCGGTCCATCAGTTGCCACGATGTTATCACTCAATGAATTTTGTATATTTCGCAACAACTGTAAGTTTTTCTTTTCATATTAWATTGTAAGTAAATATAATTATTTAAATCATAGCCTAAAAATCATCCACTGAACAATTGAAATCGGTTACTGGAAAAATTTTTATGCTGTGTTTGCAAGATTCTCAGCTTGTGAAAAATCTTGAAAACCAACATTTCTCAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28236</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>734744</contig_pos>
        <strand>+</strand>
        <context>TTCATATTAW[A/T]TTGTAAGTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGAATTTTGTATATTTCGCAACAACTGTAAGTTTTTCTTTTCATATTAT</left_flank>
        <right_flank>TTGTAAGTAAATATAATTATTTAAATCATAGCCTAAAAATCATCCACTGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTATGCAGGGACCAGGAAAAAAAATTGGTGAAAAATTAATGTCAAACTGACATCAACACATCAATATAGGCGGATACTTTTTCAGGAACTTACACTTTTTTCCATTTTTATCCAGGCTCTTAGAGTTTAAGACTTTTTTTTTTGAAAACAGGTGGTGAATAAAATATTTCTCATATTTTTAAAATTTATAATGTTGTTTTTTACTAGTGTTGCTGAGCATCGTTTCACTTAGAAAAATACTCTCAACTATAGAATCCGCCATCGATTGAATAAGTAATTTCTGAATATAAACAAAATATCAGGTTCCTGTTAAAATGCCACACTTCGCGACTCGTCGAGTAGTGGAAACAATGCCGTCCGGAACGTGGAATGACTTCACCGATCTCCCAGCGGAATACGCGTCTCAGATAGCTGCGGTCCATCAGTTGCCACGATGTTATCACTCAATGAATTTTGTATATTTCGCAACAACTGTAAGTTTTTCTTTTCATATTATATTGTAAGTAAATATAATTATTTAAATCATAGCCTAAAAATCATCCACTGAACAATTGAAATCGGTTACTGGAAAAATTTTTATGCTGTGTTTGCAAGATTCTCAGCTTGTGAAAAATCTTGAAAACCAACATTTCTCAAAATCCGGAGTAATAAAAAATCTCGGAATTTGTGAAACGGAGGCCGAAGAGATTTCTTACCTTTCTGTACTCTAGTTGTCTATTATGTTTTGTTTAACTGAGCATAATGGTACAAAAAGTCTAATTTTTATTAAAGTAAGTATGACAGTAAATTAGTATCTGTGGAAAATGTATGATTTTACAGGAATAATTTTCTTTCTGTTGAAAGTTAAAACGTAGATTCCCCCGTTTAACTAATACGCGTTTCTTATTCAAGCTTTTAATATTCAAGCTTTTATTCAGCATAAGGAGAATTTGCAAAAATTCTGGTCGCAGAGAATTTTCGTCAAAACGAATGTTATCTGAAAACAAGAAATAAACCA</canonical>
            <polymorphic>GTTTTATGCAGGGACCAGGAAAAAAAATTGGTGAAAAATTAATGTCAAACTGACATCAACACATCAATATAGGCGGATACTTTTTCAGGAACTTACACTTTTTTCCATTTTTATCCAGGCTCTTAGAGTTTAAGACTTTTTTTTTTGAAAACAGGTGGTGAATAAAATATTTCTCATATTTTTAAAATTTATAATGTTGTTTTTTACTAGTGTTGCTGAGCATCGTTTCACTTAGAAAAATACTCTCAACTATAGAATCCGCCATCGATTGAATAAGTAATTTCTGAATATAAACAAAATATCAGGTTCCTGTTAAAATGCCACACTTCGCGACTCGTCGAGTAGTGGAAACAATGCCGTCCGGAACGTGGAATGACTTCACCGATCTCCCAGCGGAATACGCGTCTCAGATAGCTGCGGTCCATCAGTTGCCACGATGTTATCACTCAATGAATTTTGTATATTTCGCAACAACTGTAAGTTTTTCTTTTCATATTATWTTGTAAGTAAATATAATTATTTAAATCATAGCCTAAAAATCATCCACTGAACAATTGAAATCGGTTACTGGAAAAATTTTTATGCTGTGTTTGCAAGATTCTCAGCTTGTGAAAAATCTTGAAAACCAACATTTCTCAAAATCCGGAGTAATAAAAAATCTCGGAATTTGTGAAACGGAGGCCGAAGAGATTTCTTACCTTTCTGTACTCTAGTTGTCTATTATGTTTTGTTTAACTGAGCATAATGGTACAAAAAGTCTAATTTTTATTAAAGTAAGTATGACAGTAAATTAGTATCTGTGGAAAATGTATGATTTTACAGGAATAATTTTCTTTCTGTTGAAAGTTAAAACGTAGATTCCCCCGTTTAACTAATACGCGTTTCTTATTCAAGCTTTTAATATTCAAGCTTTTATTCAGCATAAGGAGAATTTGCAAAAATTCTGGTCGCAGAGAATTTTCGTCAAAACGAATGTTATCTGAAAACAAGAAATAAACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAATACGCGTCTCAGATAG</pcr_primer_p1>
		<pcr_primer_p2>GATTTTGAGAAATGTTGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGAATACGCGTCTCAGATAGCTGCGGTCCATCAGTTGCCACGATGTTATCACTCAATGAATTTTGTATATTTCGCAACAACTGTAAGTTTTTCTTTTCATATTATATTGTAAGTAAATATAATTATTTAAATCATAGCCTAAAAATCATCCACTGAACAATTGAAATCGGTTACTGGAAAAATTTTTATGCTGTGTTTGCAAGATTCTCAGCTTGTGAAAAATCTTGAAAACCAACATTTCTCAAAATC</canonical_amplicon>
		<polymorphic_amplicon>GGAATACGCGTCTCAGATAGCTGCGGTCCATCAGTTGCCACGATGTTATCACTCAATGAATTTTGTATATTTCGCAACAACTGTAAGTTTTTCTTTTCATATTATWTTGTAAGTAAATATAATTATTTAAATCATAGCCTAAAAATCATCCACTGAACAATTGAAATCGGTTACTGGAAAAATTTTTATGCTGTGTTTGCAAGATTCTCAGCTTGTGAAAAATCTTGAAAACCAACATTTCTCAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28237</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>734785</contig_pos>
        <strand>+</strand>
        <context>GCCTAAAAAT[C/T]ATCCACTGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATATTATATTGTAAGTAAATATAATTATTTAAATCATAGCCTAAAAAT</left_flank>
        <right_flank>ATCCACTGAACAATTGAAATCGGTTACTGGAAAAATTTTTATGCTGTGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTCAAACTGACATCAACACATCAATATAGGCGGATACTTTTTCAGGAACTTACACTTTTTTCCATTTTTATCCAGGCTCTTAGAGTTTAAGACTTTTTTTTTTGAAAACAGGTGGTGAATAAAATATTTCTCATATTTTTAAAATTTATAATGTTGTTTTTTACTAGTGTTGCTGAGCATCGTTTCACTTAGAAAAATACTCTCAACTATAGAATCCGCCATCGATTGAATAAGTAATTTCTGAATATAAACAAAATATCAGGTTCCTGTTAAAATGCCACACTTCGCGACTCGTCGAGTAGTGGAAACAATGCCGTCCGGAACGTGGAATGACTTCACCGATCTCCCAGCGGAATACGCGTCTCAGATAGCTGCGGTCCATCAGTTGCCACGATGTTATCACTCAATGAATTTTGTATATTTCGCAACAACTGTAAGTTTTTCTTTTCATATTATATTGTAAGTAAATATAATTATTTAAATCATAGCCTAAAAATCATCCACTGAACAATTGAAATCGGTTACTGGAAAAATTTTTATGCTGTGTTTGCAAGATTCTCAGCTTGTGAAAAATCTTGAAAACCAACATTTCTCAAAATCCGGAGTAATAAAAAATCTCGGAATTTGTGAAACGGAGGCCGAAGAGATTTCTTACCTTTCTGTACTCTAGTTGTCTATTATGTTTTGTTTAACTGAGCATAATGGTACAAAAAGTCTAATTTTTATTAAAGTAAGTATGACAGTAAATTAGTATCTGTGGAAAATGTATGATTTTACAGGAATAATTTTCTTTCTGTTGAAAGTTAAAACGTAGATTCCCCCGTTTAACTAATACGCGTTTCTTATTCAAGCTTTTAATATTCAAGCTTTTATTCAGCATAAGGAGAATTTGCAAAAATTCTGGTCGCAGAGAATTTTCGTCAAAACGAATGTTATCTGAAAACAAGAAATAAACCATTTTCTCTGAATCAGCGATACAGAGTTAGGAATGAAAAAAG</canonical>
            <polymorphic>ATGTCAAACTGACATCAACACATCAATATAGGCGGATACTTTTTCAGGAACTTACACTTTTTTCCATTTTTATCCAGGCTCTTAGAGTTTAAGACTTTTTTTTTTGAAAACAGGTGGTGAATAAAATATTTCTCATATTTTTAAAATTTATAATGTTGTTTTTTACTAGTGTTGCTGAGCATCGTTTCACTTAGAAAAATACTCTCAACTATAGAATCCGCCATCGATTGAATAAGTAATTTCTGAATATAAACAAAATATCAGGTTCCTGTTAAAATGCCACACTTCGCGACTCGTCGAGTAGTGGAAACAATGCCGTCCGGAACGTGGAATGACTTCACCGATCTCCCAGCGGAATACGCGTCTCAGATAGCTGCGGTCCATCAGTTGCCACGATGTTATCACTCAATGAATTTTGTATATTTCGCAACAACTGTAAGTTTTTCTTTTCATATTATATTGTAAGTAAATATAATTATTTAAATCATAGCCTAAAAATYATCCACTGAACAATTGAAATCGGTTACTGGAAAAATTTTTATGCTGTGTTTGCAAGATTCTCAGCTTGTGAAAAATCTTGAAAACCAACATTTCTCAAAATCCGGAGTAATAAAAAATCTCGGAATTTGTGAAACGGAGGCCGAAGAGATTTCTTACCTTTCTGTACTCTAGTTGTCTATTATGTTTTGTTTAACTGAGCATAATGGTACAAAAAGTCTAATTTTTATTAAAGTAAGTATGACAGTAAATTAGTATCTGTGGAAAATGTATGATTTTACAGGAATAATTTTCTTTCTGTTGAAAGTTAAAACGTAGATTCCCCCGTTTAACTAATACGCGTTTCTTATTCAAGCTTTTAATATTCAAGCTTTTATTCAGCATAAGGAGAATTTGCAAAAATTCTGGTCGCAGAGAATTTTCGTCAAAACGAATGTTATCTGAAAACAAGAAATAAACCATTTTCTCTGAATCAGCGATACAGAGTTAGGAATGAAAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAACAACTGTAAGTTTTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>GACAACTAGAGTACAGAAAGGTAAGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCAACAACTGTAAGTTTTTCTTTTCATATTATATTGTAAGTAAATATAATTATTTAAATCATAGCCTAAAAATCATCCACTGAACAATTGAAATCGGTTACTGGAAAAATTTTTATGCTGTGTTTGCAAGATTCTCAGCTTGTGAAAAATCTTGAAAACCAACATTTCTCAAAATCCGGAGTAATAAAAAATCTCGGAATTTGTGAAACGGAGGCCGAAGAGATTTCTTACCTTTCTGTACTCTAGTTGTC</canonical_amplicon>
		<polymorphic_amplicon>GCAACAACTGTAAGTTTTTCTTTTCATATTATATTGTAAGTAAATATAATTATTTAAATCATAGCCTAAAAATYATCCACTGAACAATTGAAATCGGTTACTGGAAAAATTTTTATGCTGTGTTTGCAAGATTCTCAGCTTGTGAAAAATCTTGAAAACCAACATTTCTCAAAATCCGGAGTAATAAAAAATCTCGGAATTTGTGAAACGGAGGCCGAAGAGATTTCTTACCTTTCTGTACTCTAGTTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28238</snp_id>
        <super_contig>c003400897.Contig1</super_contig>
        <contig_pos>783320</contig_pos>
        <strand>+</strand>
        <context>TCAGAACTAG[C/T]GCAACCAGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTATTTATTTTATATTTTTGATAACTACCGTACTCCTCTATCAGAACTAG</left_flank>
        <right_flank>GCAACCAGCTATTGAATTTATTCTATTTTTTTAGAGAAGTATGAAAATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCATCAGAAAAATCATGTTTTTGATGGAAATTTAGAAAAGTTATAACATTTCATTGGGACCAGTTATAAAACTGAATTTCAAAAAATGACAAAATCCTTCAAAATTACCTTCTGTAAAATTCGAAAATCTAAATTTCTATATCAATTAAACGATCATTACTAGGCATCCAACTTTTAAGTTCAAAAAAAGCTTTAATCAGAAAAAGCTCGAATCAGAAAACAAATTTTGGAAAGCTGTTCAGAGTAGTTATAGAATTCAACTCTGATAAGTTTCCAAAAATAGAAAAAATGGATTCTTGAAAATTACCTTCTGCAAAGTCAAAAAATCTAAATTTTCGCATTCCAGGGATTTAACGACAATTTTTGAATATTCAGCTTTAGTTCCATAACAGCTTTCAGTCAGCCCAATCAATTAAACCGATTATTGCCTTAGATATTTATAATTTCCTATTTATTTTATATTTTTGATAACTACCGTACTCCTCTATCAGAACTAGTGCAACCAGCTATTGAATTTATTCTATTTTTTTAGAGAAGTATGAAAATTATTCGACAAAAAATGTTCTCGTTGTTTTATTGAACATTTGTTCCGTTGATATTACTCCAATATTATTCCTAGGACCCGACATATTTGATTGTATCAGTTTCTTAGAAAAAAAAAACTAGGCTTCATACTATATATTCAATTCTGGTGAATGACCAAATTTACAGTTTTGATTGTAAGTCTGAAGGTTACAACCGTATCTCTCCTGTTTTGTTTTTTCTAGCAACCGCTCCAATTTTCTCTAAGAGCTAGGGCATCTTCGAAGCCCTCTCGGTGCAGATGTTTTTTCGAGTTTCTGCAGTAAAACACACCACTTTGGGCAATTCCCATTGGTTTAAGACGTCATCTCACTCACAAAATCAAACGAAGCACATCCTATAAACCTTCTTCTTCCGCTTTTTACCAATTTTCTAATGTACTGCACGCCCATAAAACTCGACCTCGGCAAGAGGCG</canonical>
            <polymorphic>TTGCATCAGAAAAATCATGTTTTTGATGGAAATTTAGAAAAGTTATAACATTTCATTGGGACCAGTTATAAAACTGAATTTCAAAAAATGACAAAATCCTTCAAAATTACCTTCTGTAAAATTCGAAAATCTAAATTTCTATATCAATTAAACGATCATTACTAGGCATCCAACTTTTAAGTTCAAAAAAAGCTTTAATCAGAAAAAGCTCGAATCAGAAAACAAATTTTGGAAAGCTGTTCAGAGTAGTTATAGAATTCAACTCTGATAAGTTTCCAAAAATAGAAAAAATGGATTCTTGAAAATTACCTTCTGCAAAGTCAAAAAATCTAAATTTTCGCATTCCAGGGATTTAACGACAATTTTTGAATATTCAGCTTTAGTTCCATAACAGCTTTCAGTCAGCCCAATCAATTAAACCGATTATTGCCTTAGATATTTATAATTTCCTATTTATTTTATATTTTTGATAACTACCGTACTCCTCTATCAGAACTAGYGCAACCAGCTATTGAATTTATTCTATTTTTTTAGAGAAGTATGAAAATTATTCGACAAAAAATGTTCTCGTTGTTTTATTGAACATTTGTTCCGTTGATATTACTCCAATATTATTCCTAGGACCCGACATATTTGATTGTATCAGTTTCTTAGAAAAAAAAAACTAGGCTTCATACTATATATTCAATTCTGGTGAATGACCAAATTTACAGTTTTGATTGTAAGTCTGAAGGTTACAACCGTATCTCTCCTGTTTTGTTTTTTCTAGCAACCGCTCCAATTTTCTCTAAGAGCTAGGGCATCTTCGAAGCCCTCTCGGTGCAGATGTTTTTTCGAGTTTCTGCAGTAAAACACACCACTTTGGGCAATTCCCATTGGTTTAAGACGTCATCTCACTCACAAAATCAAACGAAGCACATCCTATAAACCTTCTTCTTCCGCTTTTTACCAATTTTCTAATGTACTGCACGCCCATAAAACTCGACCTCGGCAAGAGGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACTAGT</site>
                <isoschizomers>
                    <enzyme>AhlI</enzyme>
                    <enzyme>BcuI</enzyme>
                    <enzyme>SpeI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>321 312 186 123 33 22 3</canonical_bands>
                <polymorphic_bands>507 312 123 33 22 3</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>501 195 126 52 37 32 31 17 4 3 2</canonical_bands>
                <polymorphic_bands>696 126 52 37 32 31 17 4 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAGTTCCATAACAGCTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>GGTCCTAGGAATAATATTGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTAGTTCCATAACAGCTTTCAGTCAGCCCAATCAATTAAACCGATTATTGCCTTAGATATTTATAATTTCCTATTTATTTTATATTTTTGATAACTACCGTACTCCTCTATCAGAACTAGTGCAACCAGCTATTGAATTTATTCTATTTTTTTAGAGAAGTATGAAAATTATTCGACAAAAAATGTTCTCGTTGTTTTATTGAACATTTGTTCCGTTGATATTACTCCAATATTATTCCTAGGACC</canonical_amplicon>
		<polymorphic_amplicon>TTTAGTTCCATAACAGCTTTCAGTCAGCCCAATCAATTAAACCGATTATTGCCTTAGATATTTATAATTTCCTATTTATTTTATATTTTTGATAACTACCGTACTCCTCTATCAGAACTAGYGCAACCAGCTATTGAATTTATTCTATTTTTTTAGAGAAGTATGAAAATTATTCGACAAAAAATGTTCTCGTTGTTTTATTGAACATTTGTTCCGTTGATATTACTCCAATATTATTCCTAGGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28239</snp_id>
        <super_contig>c003400901.Contig1</super_contig>
        <contig_pos>16168</contig_pos>
        <strand></strand>
        <context>aaatcggtcc[T/A]aaaaatcacc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATTGTTCTTAAAAATGCCCAAATTGCGCTTAAAAATGGCCAAATCGGTCC</left_flank>
        <right_flank>AAAAATCACCAAATTTATCCTAGAAAATGGCCAAATAGGCTCTAAAAATG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCTTTCTATGATCTTCAGATTCTTCTAGATCCTTCTAGGATCCTTCTAGGATCCTTCTAGGATCCTTCTAGGATCCTTCTAGAATCCTTCTAGAATCTTCTAGATCCTTCTAGAACGATTCAGAGAAACATAGAAGGACTGGGATCTTCAGAATTCTTCTAGCATCTTCCAGACCCCTCTAGACCCTAAAAATCCTCCATTTTCCAGGACGATCTGATGCGTGAGTTCTACGTCAAATATCTGAAACTCGACTCCGTGGGAACCATCTCCAACAGCCATCTCCACAACTCGGATCAGTACGGTCTGAACGCGAGAGTCTGCATGGATTTGGCCAAGAAGAATTGCCAGGCAGTGGATTTCACAAAGTCCGGACAACCGCCAGAAGAGTTGGAGAGAAAGTGGAGGAAAGGTGAGAATTCTGGCAATTAGGCCCTGAAAATTCGTCAAATTGTTCTTAAAAATGCCCAAATTGCGCTTAAAAATGGCCAAATCGGTCCTAAAAATCACCAAATTTATCCTAGAAAATGGCCAAATAGGCTCTAAAAATGGCCAAATTGCTTCTTAAAATTGCCTAATTGGCTCTAAAAATGGCTAATTTGGTCATCGGAACCCCACTCTTTAAAATAAGCAATCTGAAAAATTCCCGCAATTTTCAGCATTTGTGGAGTTAAATCGGCAGTGTTGGCTCTAAAAAATGGTTAAAATGACCCCTAAAAGTCGCTAAATTGGTTCTAAAATTGCCGAAATTTGTACATGAGCAATCTGAAATCTGAAAAATGATTTTCAGACGAAGTGACAGGCGAGATGATTCCACCGGAACGTGCCGAACGAGTGCCCGACTATCATATGGGCAACGATCACACGCCGATGTATGTCAGCCCACGACTCTGTGGAAAATTGTTCCGCGAGTTCAAAGCCATCGACGATGTGCTGAAAATCTCGGAGGAACGCGATGAACAAGTCGAGATTACGATCGACGAGACGATTATGGTGGATGG</canonical>
            <polymorphic>GATCTTTCTATGATCTTCAGATTCTTCTAGATCCTTCTAGGATCCTTCTAGGATCCTTCTAGGATCCTTCTAGGATCCTTCTAGAATCCTTCTAGAATCTTCTAGATCCTTCTAGAACGATTCAGAGAAACATAGAAGGACTGGGATCTTCAGAATTCTTCTAGCATCTTCCAGACCCCTCTAGACCCTAAAAATCCTCCATTTTCCAGGACGATCTGATGCGTGAGTTCTACGTCAAATATCTGAAACTCGACTCCGTGGGAACCATCTCCAACAGCCATCTCCACAACTCGGATCAGTACGGTCTGAACGCGAGAGTCTGCATGGATTTGGCCAAGAAGAATTGCCAGGCAGTGGATTTCACAAAGTCCGGACAACCGCCAGAAGAGTTGGAGAGAAAGTGGAGGAAAGGTGAGAATTCTGGCAATTAGGCCCTGAAAATTCGTCAAATTGTTCTTAAAAATGCCCAAATTGCGCTTAAAAATGGCCAAATCGGTCCWAAAAATCACCAAATTTATCCTAGAAAATGGCCAAATAGGCTCTAAAAATGGCCAAATTGCTTCTTAAAATTGCCTAATTGGCTCTAAAAATGGCTAATTTGGTCATCGGAACCCCACTCTTTAAAATAAGCAATCTGAAAAATTCCCGCAATTTTCAGCATTTGTGGAGTTAAATCGGCAGTGTTGGCTCTAAAAAATGGTTAAAATGACCCCTAAAAGTCGCTAAATTGGTTCTAAAATTGCCGAAATTTGTACATGAGCAATCTGAAATCTGAAAAATGATTTTCAGACGAAGTGACAGGCGAGATGATTCCACCGGAACGTGCCGAACGAGTGCCCGACTATCATATGGGCAACGATCACACGCCGATGTATGTCAGCCCACGACTCTGTGGAAAATTGTTCCGCGAGTTCAAAGCCATCGACGATGTGCTGAAAATCTCGGAGGAACGCGATGAACAAGTCGAGATTACGATCGACGAGACGATTATGGTGGATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGGAGGAAAGGTGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>GGAATTTTTCAGATTGCTTATTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGTGGAGGAAAGGTGAGAATTCTGGCAATTAGGCCCTGAAAATTCGTCAAATTGTTCTTAAAAATGCCCAAATTGCGCTTAAAAATGGCCAAATCGGTCCTAAAAATCACCAAATTTATCCTAGAAAATGGCCAAATAGGCTCTAAAAATGGCCAAATTGCTTCTTAAAATTGCCTAATTGGCTCTAAAAATGGCTAATTTGGTCATCGGAACCCCACTCTTTAAAATAAGCAATCTGAAAAATTCC</canonical_amplicon>
		<polymorphic_amplicon>AGTGGAGGAAAGGTGAGAATTCTGGCAATTAGGCCCTGAAAATTCGTCAAATTGTTCTTAAAAATGCCCAAATTGCGCTTAAAAATGGCCAAATCGGTCCWAAAAATCACCAAATTTATCCTAGAAAATGGCCAAATAGGCTCTAAAAATGGCCAAATTGCTTCTTAAAATTGCCTAATTGGCTCTAAAAATGGCTAATTTGGTCATCGGAACCCCACTCTTTAAAATAAGCAATCTGAAAAATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28240</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>1571</contig_pos>
        <strand></strand>
        <context>tcgaaaattc[T/C]gatttggaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGCGATTTTCGGAATGACATTTTCGGAAATTATCGGAATGTCGAAAATTC</left_flank>
        <right_flank>GATTTGGAAATTTTCGGATTTTCGGAACCTCGGAATTTTCCGATTTTTTA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCCGCACCCCAAAATTACTGTTTTTCTAGAAAAATAAACGATCGACACACACAAATATAGACAGGAGGAGTGAGGTTCTCCAATTTTACTCCAAAACTTCAAAATGGATTCGCATGTTGGCGAAGTTGATATATTCCAACAATGCAAGTATATTCATGAGGTTCGTTTGAGACTATCGTAAAACCTGTAATAGAAGGCACTCCTAACTTCAACATATAAATTGCTTATCGTAAAATCAAAAATGTTTTGTCAATTGACACATTTTTGTTATGTTGCACAGGAGCCAAGAAAAATTAGCTCAAACTTGACAGTGGAGGGCCCTTTTTTTACAGGTTGGTCAGTATTTTCGAAACGTTTGTTCAATTTTTCAGAAGGTATCGAAACCAAACGTTATCCTAAAAATCCAATTTTCAACGAAAATTGTTTTTGATTTTACATCCTGAAGTTCAGCGATTTTCGGAATGACATTTTCGGAAATTATCGGAATGTCGAAAATTCTGATTTGGAAATTTTCGGATTTTCGGAACCTCGGAATTTTCCGATTTTTTAACTTTCGGAATTCCAAAATATTCTAAATGTGAAACTTTCGGAATTTCGGAATTTTCTGAATTTTTAAAAATTGAAATTTTATTTTTCCATCACAAAAACGCCGAGAATAGGTTAAAATGGAAAACATAAAGATTTTGAAAACACACAAAATTTAAAGTAGTTCTAAGCAAATTTTCCGCGACATACCATAGTCCACAAATCTCCAATTCCAAAAAAGCTTCGGAAATATTCCTGTCATAATTTCATTCCGAATTTTTTTCTCGGAATTTCATTCTGAAAATGGTACGAATTTTGGGAATTCCGAATCCGCTCCGAACATACCTGCTGACGTTTATGAAATAGTAGTGTTATGTCATTGGAAATGTACCTCACTTTTTAAAGCTTTCAGGTAGAACTTGTGAATATGAAACTTCAAATGCGAATCCTGGAGACACACATTGAAACCAAAGA</canonical>
            <polymorphic>CCCCGCACCCCAAAATTACTGTTTTTCTAGAAAAATAAACGATCGACACACACAAATATAGACAGGAGGAGTGAGGTTCTCCAATTTTACTCCAAAACTTCAAAATGGATTCGCATGTTGGCGAAGTTGATATATTCCAACAATGCAAGTATATTCATGAGGTTCGTTTGAGACTATCGTAAAACCTGTAATAGAAGGCACTCCTAACTTCAACATATAAATTGCTTATCGTAAAATCAAAAATGTTTTGTCAATTGACACATTTTTGTTATGTTGCACAGGAGCCAAGAAAAATTAGCTCAAACTTGACAGTGGAGGGCCCTTTTTTTACAGGTTGGTCAGTATTTTCGAAACGTTTGTTCAATTTTTCAGAAGGTATCGAAACCAAACGTTATCCTAAAAATCCAATTTTCAACGAAAATTGTTTTTGATTTTACATCCTGAAGTTCAGCGATTTTCGGAATGACATTTTCGGAAATTATCGGAATGTCGAAAATTCYGATTTGGAAATTTTCGGATTTTCGGAACCTCGGAATTTTCCGATTTTTTAACTTTCGGAATTCCAAAATATTCTAAATGTGAAACTTTCGGAATTTCGGAATTTTCTGAATTTTTAAAAATTGAAATTTTATTTTTCCATCACAAAAACGCCGAGAATAGGTTAAAATGGAAAACATAAAGATTTTGAAAACACACAAAATTTAAAGTAGTTCTAAGCAAATTTTCCGCGACATACCATAGTCCACAAATCTCCAATTCCAAAAAAGCTTCGGAAATATTCCTGTCATAATTTCATTCCGAATTTTTTTCTCGGAATTTCATTCTGAAAATGGTACGAATTTTGGGAATTCCGAATCCGCTCCGAACATACCTGCTGACGTTTATGAAATAGTAGTGTTATGTCATTGGAAATGTACCTCACTTTTTAAAGCTTTCAGGTAGAACTTGTGAATATGAAACTTCAAATGCGAATCCTGGAGACACACATTGAAACCAAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGATTTTACATCCTGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>CATTTCCAATGACATAACACTACT</pcr_primer_p2>
		<pcr_amplicon_size>489</pcr_amplicon_size>
		<canonical_amplicon>TTTTGATTTTACATCCTGAAGTTCAGCGATTTTCGGAATGACATTTTCGGAAATTATCGGAATGTCGAAAATTCTGATTTGGAAATTTTCGGATTTTCGGAACCTCGGAATTTTCCGATTTTTTAACTTTCGGAATTCCAAAATATTCTAAATGTGAAACTTTCGGAATTTCGGAATTTTCTGAATTTTTAAAAATTGAAATTTTATTTTTCCATCACAAAAACGCCGAGAATAGGTTAAAATGGAAAACATAAAGATTTTGAAAACACACAAAATTTAAAGTAGTTCTAAGCAAATTTTCCGCGACATACCATAGTCCACAAATCTCCAATTCCAAAAAAGCTTCGGAAATATTCCTGTCATAATTTCATTCCGAATTTTTTTCTCGGAATTTCATTCTGAAAATGGTACGAATTTTGGGAATTCCGAATCCGCTCCGAACATACCTGCTGACGTTTATGAAATAGTAGTGTTATGTCATTGGAAATG</canonical_amplicon>
		<polymorphic_amplicon>TTTTGATTTTACATCCTGAAGTTCAGCGATTTTCGGAATGACATTTTCGGAAATTATCGGAATGTCGAAAATTCYGATTTGGAAATTTTCGGATTTTCGGAACCTCGGAATTTTCCGATTTTTTAACTTTCGGAATTCCAAAATATTCTAAATGTGAAACTTTCGGAATTTCGGAATTTTCTGAATTTTTAAAAATTGAAATTTTATTTTTCCATCACAAAAACGCCGAGAATAGGTTAAAATGGAAAACATAAAGATTTTGAAAACACACAAAATTTAAAGTAGTTCTAAGCAAATTTTCCGCGACATACCATAGTCCACAAATCTCCAATTCCAAAAAAGCTTCGGAAATATTCCTGTCATAATTTCATTCCGAATTTTTTTCTCGGAATTTCATTCTGAAAATGGTACGAATTTTGGGAATTCCGAATCCGCTCCGAACATACCTGCTGACGTTTATGAAATAGTAGTGTTATGTCATTGGAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28241</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>1634</contig_pos>
        <strand></strand>
        <context>tttcggaatt[C/T]caaaatatty</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCGGATTTTCGGAACCTCGGAATTTTCCGATTTTTTAACTTTCGGAATT</left_flank>
        <right_flank>CAAAATATTCTAAATGTGAAACTTTCGGAATTTCGGAATTTTCTGAATTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAGGAGTGAGGTTCTCCAATTTTACTCCAAAACTTCAAAATGGATTCGCATGTTGGCGAAGTTGATATATTCCAACAATGCAAGTATATTCATGAGGTTCGTTTGAGACTATCGTAAAACCTGTAATAGAAGGCACTCCTAACTTCAACATATAAATTGCTTATCGTAAAATCAAAAATGTTTTGTCAATTGACACATTTTTGTTATGTTGCACAGGAGCCAAGAAAAATTAGCTCAAACTTGACAGTGGAGGGCCCTTTTTTTACAGGTTGGTCAGTATTTTCGAAACGTTTGTTCAATTTTTCAGAAGGTATCGAAACCAAACGTTATCCTAAAAATCCAATTTTCAACGAAAATTGTTTTTGATTTTACATCCTGAAGTTCAGCGATTTTCGGAATGACATTTTCGGAAATTATCGGAATGTCGAAAATTCTGATTTGGAAATTTTCGGATTTTCGGAACCTCGGAATTTTCCGATTTTTTAACTTTCGGAATTCCAAAATATTCTAAATGTGAAACTTTCGGAATTTCGGAATTTTCTGAATTTTTAAAAATTGAAATTTTATTTTTCCATCACAAAAACGCCGAGAATAGGTTAAAATGGAAAACATAAAGATTTTGAAAACACACAAAATTTAAAGTAGTTCTAAGCAAATTTTCCGCGACATACCATAGTCCACAAATCTCCAATTCCAAAAAAGCTTCGGAAATATTCCTGTCATAATTTCATTCCGAATTTTTTTCTCGGAATTTCATTCTGAAAATGGTACGAATTTTGGGAATTCCGAATCCGCTCCGAACATACCTGCTGACGTTTATGAAATAGTAGTGTTATGTCATTGGAAATGTACCTCACTTTTTAAAGCTTTCAGGTAGAACTTGTGAATATGAAACTTCAAATGCGAATCCTGGAGACACACATTGAAACCAAAGACAGACTTCTGAGAAATTTAGAAGATATTATTGATGAACAGGAATCACGAATTGCCAATATGGA</canonical>
            <polymorphic>AGGAGGAGTGAGGTTCTCCAATTTTACTCCAAAACTTCAAAATGGATTCGCATGTTGGCGAAGTTGATATATTCCAACAATGCAAGTATATTCATGAGGTTCGTTTGAGACTATCGTAAAACCTGTAATAGAAGGCACTCCTAACTTCAACATATAAATTGCTTATCGTAAAATCAAAAATGTTTTGTCAATTGACACATTTTTGTTATGTTGCACAGGAGCCAAGAAAAATTAGCTCAAACTTGACAGTGGAGGGCCCTTTTTTTACAGGTTGGTCAGTATTTTCGAAACGTTTGTTCAATTTTTCAGAAGGTATCGAAACCAAACGTTATCCTAAAAATCCAATTTTCAACGAAAATTGTTTTTGATTTTACATCCTGAAGTTCAGCGATTTTCGGAATGACATTTTCGGAAATTATCGGAATGTCGAAAATTCTGATTTGGAAATTTTCGGATTTTCGGAACCTCGGAATTTTCCGATTTTTTAACTTTCGGAATTYCAAAATATTCTAAATGTGAAACTTTCGGAATTTCGGAATTTTCTGAATTTTTAAAAATTGAAATTTTATTTTTCCATCACAAAAACGCCGAGAATAGGTTAAAATGGAAAACATAAAGATTTTGAAAACACACAAAATTTAAAGTAGTTCTAAGCAAATTTTCCGCGACATACCATAGTCCACAAATCTCCAATTCCAAAAAAGCTTCGGAAATATTCCTGTCATAATTTCATTCCGAATTTTTTTCTCGGAATTTCATTCTGAAAATGGTACGAATTTTGGGAATTCCGAATCCGCTCCGAACATACCTGCTGACGTTTATGAAATAGTAGTGTTATGTCATTGGAAATGTACCTCACTTTTTAAAGCTTTCAGGTAGAACTTGTGAATATGAAACTTCAAATGCGAATCCTGGAGACACACATTGAAACCAAAGACAGACTTCTGAGAAATTTAGAAGATATTATTGATGAACAGGAATCACGAATTGCCAATATGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>431 167 81 74 50 33 25 25 23 21 16 14 14 9 9 8</canonical_bands>
                <polymorphic_bands>431 167 81 74 58 50 25 23 21 16 14 14 9 9 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>495 288 217</canonical_bands>
                <polymorphic_bands>783 217</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGATTTTACATCCTGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>CATTTCCAATGACATAACACTACT</pcr_primer_p2>
		<pcr_amplicon_size>489</pcr_amplicon_size>
		<canonical_amplicon>TTTTGATTTTACATCCTGAAGTTCAGCGATTTTCGGAATGACATTTTCGGAAATTATCGGAATGTCGAAAATTCTGATTTGGAAATTTTCGGATTTTCGGAACCTCGGAATTTTCCGATTTTTTAACTTTCGGAATTCCAAAATATTCTAAATGTGAAACTTTCGGAATTTCGGAATTTTCTGAATTTTTAAAAATTGAAATTTTATTTTTCCATCACAAAAACGCCGAGAATAGGTTAAAATGGAAAACATAAAGATTTTGAAAACACACAAAATTTAAAGTAGTTCTAAGCAAATTTTCCGCGACATACCATAGTCCACAAATCTCCAATTCCAAAAAAGCTTCGGAAATATTCCTGTCATAATTTCATTCCGAATTTTTTTCTCGGAATTTCATTCTGAAAATGGTACGAATTTTGGGAATTCCGAATCCGCTCCGAACATACCTGCTGACGTTTATGAAATAGTAGTGTTATGTCATTGGAAATG</canonical_amplicon>
		<polymorphic_amplicon>TTTTGATTTTACATCCTGAAGTTCAGCGATTTTCGGAATGACATTTTCGGAAATTATCGGAATGTCGAAAATTCTGATTTGGAAATTTTCGGATTTTCGGAACCTCGGAATTTTCCGATTTTTTAACTTTCGGAATTYCAAAATATTCTAAATGTGAAACTTTCGGAATTTCGGAATTTTCTGAATTTTTAAAAATTGAAATTTTATTTTTCCATCACAAAAACGCCGAGAATAGGTTAAAATGGAAAACATAAAGATTTTGAAAACACACAAAATTTAAAGTAGTTCTAAGCAAATTTTCCGCGACATACCATAGTCCACAAATCTCCAATTCCAAAAAAGCTTCGGAAATATTCCTGTCATAATTTCATTCCGAATTTTTTTCTCGGAATTTCATTCTGAAAATGGTACGAATTTTGGGAATTCCGAATCCGCTCCGAACATACCTGCTGACGTTTATGAAATAGTAGTGTTATGTCATTGGAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28242</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>1644</contig_pos>
        <strand></strand>
        <context>ycaaaatatt[C/T]taaatgtgaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGAACCTCGGAATTTTCCGATTTTTTAACTTTCGGAATTCCAAAATATT</left_flank>
        <right_flank>TAAATGTGAAACTTTCGGAATTTCGGAATTTTCTGAATTTTTAAAAATTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTTCTCCAATTTTACTCCAAAACTTCAAAATGGATTCGCATGTTGGCGAAGTTGATATATTCCAACAATGCAAGTATATTCATGAGGTTCGTTTGAGACTATCGTAAAACCTGTAATAGAAGGCACTCCTAACTTCAACATATAAATTGCTTATCGTAAAATCAAAAATGTTTTGTCAATTGACACATTTTTGTTATGTTGCACAGGAGCCAAGAAAAATTAGCTCAAACTTGACAGTGGAGGGCCCTTTTTTTACAGGTTGGTCAGTATTTTCGAAACGTTTGTTCAATTTTTCAGAAGGTATCGAAACCAAACGTTATCCTAAAAATCCAATTTTCAACGAAAATTGTTTTTGATTTTACATCCTGAAGTTCAGCGATTTTCGGAATGACATTTTCGGAAATTATCGGAATGTCGAAAATTCTGATTTGGAAATTTTCGGATTTTCGGAACCTCGGAATTTTCCGATTTTTTAACTTTCGGAATTCCAAAATATTCTAAATGTGAAACTTTCGGAATTTCGGAATTTTCTGAATTTTTAAAAATTGAAATTTTATTTTTCCATCACAAAAACGCCGAGAATAGGTTAAAATGGAAAACATAAAGATTTTGAAAACACACAAAATTTAAAGTAGTTCTAAGCAAATTTTCCGCGACATACCATAGTCCACAAATCTCCAATTCCAAAAAAGCTTCGGAAATATTCCTGTCATAATTTCATTCCGAATTTTTTTCTCGGAATTTCATTCTGAAAATGGTACGAATTTTGGGAATTCCGAATCCGCTCCGAACATACCTGCTGACGTTTATGAAATAGTAGTGTTATGTCATTGGAAATGTACCTCACTTTTTAAAGCTTTCAGGTAGAACTTGTGAATATGAAACTTCAAATGCGAATCCTGGAGACACACATTGAAACCAAAGACAGACTTCTGAGAAATTTAGAAGATATTATTGATGAACAGGAATCACGAATTGCCAATATGGAGGATTTTATT</canonical>
            <polymorphic>AGGTTCTCCAATTTTACTCCAAAACTTCAAAATGGATTCGCATGTTGGCGAAGTTGATATATTCCAACAATGCAAGTATATTCATGAGGTTCGTTTGAGACTATCGTAAAACCTGTAATAGAAGGCACTCCTAACTTCAACATATAAATTGCTTATCGTAAAATCAAAAATGTTTTGTCAATTGACACATTTTTGTTATGTTGCACAGGAGCCAAGAAAAATTAGCTCAAACTTGACAGTGGAGGGCCCTTTTTTTACAGGTTGGTCAGTATTTTCGAAACGTTTGTTCAATTTTTCAGAAGGTATCGAAACCAAACGTTATCCTAAAAATCCAATTTTCAACGAAAATTGTTTTTGATTTTACATCCTGAAGTTCAGCGATTTTCGGAATGACATTTTCGGAAATTATCGGAATGTCGAAAATTCTGATTTGGAAATTTTCGGATTTTCGGAACCTCGGAATTTTCCGATTTTTTAACTTTCGGAATTCCAAAATATTYTAAATGTGAAACTTTCGGAATTTCGGAATTTTCTGAATTTTTAAAAATTGAAATTTTATTTTTCCATCACAAAAACGCCGAGAATAGGTTAAAATGGAAAACATAAAGATTTTGAAAACACACAAAATTTAAAGTAGTTCTAAGCAAATTTTCCGCGACATACCATAGTCCACAAATCTCCAATTCCAAAAAAGCTTCGGAAATATTCCTGTCATAATTTCATTCCGAATTTTTTTCTCGGAATTTCATTCTGAAAATGGTACGAATTTTGGGAATTCCGAATCCGCTCCGAACATACCTGCTGACGTTTATGAAATAGTAGTGTTATGTCATTGGAAATGTACCTCACTTTTTAAAGCTTTCAGGTAGAACTTGTGAATATGAAACTTCAAATGCGAATCCTGGAGACACACATTGAAACCAAAGACAGACTTCTGAGAAATTTAGAAGATATTATTGATGAACAGGAATCACGAATTGCCAATATGGAGGATTTTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGATTTTACATCCTGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>CATTTCCAATGACATAACACTACT</pcr_primer_p2>
		<pcr_amplicon_size>489</pcr_amplicon_size>
		<canonical_amplicon>TTTTGATTTTACATCCTGAAGTTCAGCGATTTTCGGAATGACATTTTCGGAAATTATCGGAATGTCGAAAATTCTGATTTGGAAATTTTCGGATTTTCGGAACCTCGGAATTTTCCGATTTTTTAACTTTCGGAATTCCAAAATATTCTAAATGTGAAACTTTCGGAATTTCGGAATTTTCTGAATTTTTAAAAATTGAAATTTTATTTTTCCATCACAAAAACGCCGAGAATAGGTTAAAATGGAAAACATAAAGATTTTGAAAACACACAAAATTTAAAGTAGTTCTAAGCAAATTTTCCGCGACATACCATAGTCCACAAATCTCCAATTCCAAAAAAGCTTCGGAAATATTCCTGTCATAATTTCATTCCGAATTTTTTTCTCGGAATTTCATTCTGAAAATGGTACGAATTTTGGGAATTCCGAATCCGCTCCGAACATACCTGCTGACGTTTATGAAATAGTAGTGTTATGTCATTGGAAATG</canonical_amplicon>
		<polymorphic_amplicon>TTTTGATTTTACATCCTGAAGTTCAGCGATTTTCGGAATGACATTTTCGGAAATTATCGGAATGTCGAAAATTCTGATTTGGAAATTTTCGGATTTTCGGAACCTCGGAATTTTCCGATTTTTTAACTTTCGGAATTCCAAAATATTYTAAATGTGAAACTTTCGGAATTTCGGAATTTTCTGAATTTTTAAAAATTGAAATTTTATTTTTCCATCACAAAAACGCCGAGAATAGGTTAAAATGGAAAACATAAAGATTTTGAAAACACACAAAATTTAAAGTAGTTCTAAGCAAATTTTCCGCGACATACCATAGTCCACAAATCTCCAATTCCAAAAAAGCTTCGGAAATATTCCTGTCATAATTTCATTCCGAATTTTTTTCTCGGAATTTCATTCTGAAAATGGTACGAATTTTGGGAATTCCGAATCCGCTCCGAACATACCTGCTGACGTTTATGAAATAGTAGTGTTATGTCATTGGAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28243</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>44871</contig_pos>
        <strand>+</strand>
        <context>GATATAAATT[A/G]AAAAAAAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTCTTTGCATGACATTTTTTGTGGTGAAAATTGCAGTGAGATATAAATT</left_flank>
        <right_flank>AAAAAAAACATAATTGAAAGTCATATTAGTAGGAATTCGGACTTCGCGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTGTTCTGAATACTTAAAAACGCATTAAATAGGTCAGTTCAATTGACATATAAGGTATCCAGCTGTGCTGGCGGATTTGTGTTGTTTTGTTCACTTCAAGTAGTATGTGATTTCATTTCTAGATGTTATGATTAATTGAAAATTTCCGTTCAGGAAAAACAAATTTAAGAATTCGTAAACATTTTAGGTCTTGAGTGTTGTAAGCATTTCAGAATTTGTTCGAACTTTTTGGGTGTCGTATTTTGAACTGTTAGCTTCACATCAAGCAGGACCCATTTGGAAAAACCTCAACTTCTTCAAAATTCAGAAATCGCGGGTTACTGTAGTTGATGGGTCAATCACCACTCAAATCTAGAAGGAGGATTACTGTAGAAGAAGCGTCGGCAATTCAATCACCCACACAATTAAAAAGGAGAAAATGGACGAGGACTACGGTAGGTTATATGGGCTCTTTGCATGACATTTTTTGTGGTGAAAATTGCAGTGAGATATAAATTAAAAAAAAACATAATTGAAAGTCATATTAGTAGGAATTCGGACTTCGCGTCACTTCGAAACCGCGACACTTCGAAACCAGCCATTTCGAAGCCGGTCATTTCGAAACCTAGGTAATTCAGGCGAATGGACGAACTACAGACTACAAAAACAATTTTAGGGTTCTCAAATGTGCTTTTTCTGATAGAAAAATACTGAAACTTTAAAAATTCCCAAAAATTTTTTTGAAAAAATTAATTTTGGATTTTTTCCGAATTTCCAAATGTGTTCCATCAGAAAAAGTATATCTGAAAATCATCAAATCTGAATTCAAAATTTCGAACAAAAAGAATATAAAGAAACAATTCAAAATCTTTCGTCTGCTCAGGTAAATTGGAAAACCATTCTGAGCAACATTTGAGCAATTCTGAAACCTTTTCAAGCAAAAAGTCCACGATTAAACTTTTTCAAGCCACAATCAAACTTTTCAAACTTTTCTAAGCAACTTGTAAACTTTATCCAGC</canonical>
            <polymorphic>ACCTGTTCTGAATACTTAAAAACGCATTAAATAGGTCAGTTCAATTGACATATAAGGTATCCAGCTGTGCTGGCGGATTTGTGTTGTTTTGTTCACTTCAAGTAGTATGTGATTTCATTTCTAGATGTTATGATTAATTGAAAATTTCCGTTCAGGAAAAACAAATTTAAGAATTCGTAAACATTTTAGGTCTTGAGTGTTGTAAGCATTTCAGAATTTGTTCGAACTTTTTGGGTGTCGTATTTTGAACTGTTAGCTTCACATCAAGCAGGACCCATTTGGAAAAACCTCAACTTCTTCAAAATTCAGAAATCGCGGGTTACTGTAGTTGATGGGTCAATCACCACTCAAATCTAGAAGGAGGATTACTGTAGAAGAAGCGTCGGCAATTCAATCACCCACACAATTAAAAAGGAGAAAATGGACGAGGACTACGGTAGGTTATATGGGCTCTTTGCATGACATTTTTTGTGGTGAAAATTGCAGTGAGATATAAATTRAAAAAAAACATAATTGAAAGTCATATTAGTAGGAATTCGGACTTCGCGTCACTTCGAAACCGCGACACTTCGAAACCAGCCATTTCGAAGCCGGTCATTTCGAAACCTAGGTAATTCAGGCGAATGGACGAACTACAGACTACAAAAACAATTTTAGGGTTCTCAAATGTGCTTTTTCTGATAGAAAAATACTGAAACTTTAAAAATTCCCAAAAATTTTTTTGAAAAAATTAATTTTGGATTTTTTCCGAATTTCCAAATGTGTTCCATCAGAAAAAGTATATCTGAAAATCATCAAATCTGAATTCAAAATTTCGAACAAAAAGAATATAAAGAAACAATTCAAAATCTTTCGTCTGCTCAGGTAAATTGGAAAACCATTCTGAGCAACATTTGAGCAATTCTGAAACCTTTTCAAGCAAAAAGTCCACGATTAAACTTTTTCAAGCCACAATCAAACTTTTCAAACTTTTCTAAGCAACTTGTAAACTTTATCCAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>240 203 202 107 91 66 33 31 16 11</canonical_bands>
                <polymorphic_bands>293 240 203 107 66 33 31 16 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACACAATTAAAAAGGAGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGTAGTCTGTAGTTCGTCCATTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACACAATTAAAAAGGAGAAAATGGACGAGGACTACGGTAGGTTATATGGGCTCTTTGCATGACATTTTTTGTGGTGAAAATTGCAGTGAGATATAAATTAAAAAAAAACATAATTGAAAGTCATATTAGTAGGAATTCGGACTTCGCGTCACTTCGAAACCGCGACACTTCGAAACCAGCCATTTCGAAGCCGGTCATTTCGAAACCTAGGTAATTCAGGCGAATGGACGAACTACAGACTACA</canonical_amplicon>
		<polymorphic_amplicon>CACACAATTAAAAAGGAGAAAATGGACGAGGACTACGGTAGGTTATATGGGCTCTTTGCATGACATTTTTTGTGGTGAAAATTGCAGTGAGATATAAATTRAAAAAAAACATAATTGAAAGTCATATTAGTAGGAATTCGGACTTCGCGTCACTTCGAAACCGCGACACTTCGAAACCAGCCATTTCGAAGCCGGTCATTTCGAAACCTAGGTAATTCAGGCGAATGGACGAACTACAGACTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28244</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>47453</contig_pos>
        <strand></strand>
        <context>tattaacaac[G/A]ttttattgat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CATATATCTCGGTTCTTGTTAAAGATATCAAAAAGTAGTCTATTAACAAC</left_flank>
        <right_flank>TTTTATTGATATTATGGTAATTATTATGTTAGTTGACCACTTTTTGATAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTTTTCTTTCCACCTGCTCAATTCTCTCTATTCTCCTTGAATTGCCCTATTCTCTTCTCCTTCTGCTTCTTCATCCCTTATTTTCTTTCTGGGACGGTTGTTGTTTACGAGAACTCTCATGCATTTCGCAATTTCCTCTCTTTTCCCCTCATCATTTTGTGCTTCCACACATCTCTTCGGTTTTTTTTCGGAAACAAAAAAATGACTCAGATGACGCCTTCTTGGGTCATGCCATAACTTTGTTATATGTTTACATGTCCGAGGGATGGAGGTCGCCAATTCTTCTTCTTCTTTTTTTGCGACTTCGGTGGCTACTATTACGTTCTGTTTGAATTAGGATTCTGGGATTTATTCTTACACATCGTGTACTTTTAGCTTATTTTAACAACTTTTGTAACTACCGTAAACTCTCTCATAGAGCGCCCCTCAAACCGTCAACTTCGAGCCCATATATCTCGGTTCTTGTTAAAGATATCAAAAAGTAGTCTATTAACAACGTTTTATTGATATTATGGTAATTATTATGTTAGTTGACCACTTTTTGATATCTTTAACAGGAACAGAGATAAATTGGCTCAAAGTTAAAAGTGAGGGAGCCCTTATATTACAGGTTTTACGTTATACGGCATGTTTCCTGTAAAAGATATCAAAAAAGTGTCAAATGATACAATGTTTTTGATATCATGATAAACAATTTATCAGTTTACAAATTTTCGAATCTTTGATAAGAACCTAGATAAATTGGCTCAAAGTTGAAAGTTGGGGGTGGCGTCCTATTAGATTGTTGACGGTAGATACTAAAGAAAAATTTGTAATCCTGCGTTCGGATAATTAAATAATGTTTGAATAGCTACAGTAATCCAAATCATGCTCATCCTTGTATTTGAATGTTTCACAACCGCATAATCTGCTCTTATCCATTGCCGCTTTCCATGTCCATTAAACAATTCCATCTGCTGCCACCATTTTAGTTCAAATTTGCATATAGCGAGTATATG</canonical>
            <polymorphic>CCTTTTTCTTTCCACCTGCTCAATTCTCTCTATTCTCCTTGAATTGCCCTATTCTCTTCTCCTTCTGCTTCTTCATCCCTTATTTTCTTTCTGGGACGGTTGTTGTTTACGAGAACTCTCATGCATTTCGCAATTTCCTCTCTTTTCCCCTCATCATTTTGTGCTTCCACACATCTCTTCGGTTTTTTTTCGGAAACAAAAAAATGACTCAGATGACGCCTTCTTGGGTCATGCCATAACTTTGTTATATGTTTACATGTCCGAGGGATGGAGGTCGCCAATTCTTCTTCTTCTTTTTTTGCGACTTCGGTGGCTACTATTACGTTCTGTTTGAATTAGGATTCTGGGATTTATTCTTACACATCGTGTACTTTTAGCTTATTTTAACAACTTTTGTAACTACCGTAAACTCTCTCATAGAGCGCCCCTCAAACCGTCAACTTCGAGCCCATATATCTCGGTTCTTGTTAAAGATATCAAAAAGTAGTCTATTAACAACRTTTTATTGATATTATGGTAATTATTATGTTAGTTGACCACTTTTTGATATCTTTAACAGGAACAGAGATAAATTGGCTCAAAGTTAAAAGTGAGGGAGCCCTTATATTACAGGTTTTACGTTATACGGCATGTTTCCTGTAAAAGATATCAAAAAAGTGTCAAATGATACAATGTTTTTGATATCATGATAAACAATTTATCAGTTTACAAATTTTCGAATCTTTGATAAGAACCTAGATAAATTGGCTCAAAGTTGAAAGTTGGGGGTGGCGTCCTATTAGATTGTTGACGGTAGATACTAAAGAAAAATTTGTAATCCTGCGTTCGGATAATTAAATAATGTTTGAATAGCTACAGTAATCCAAATCATGCTCATCCTTGTATTTGAATGTTTCACAACCGCATAATCTGCTCTTATCCATTGCCGCTTTCCATGTCCATTAAACAATTCCATCTGCTGCCACCATTTTAGTTCAAATTTGCATATAGCGAGTATATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>382 322 176 120</canonical_bands>
                <polymorphic_bands>382 322 296</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTTAGCTTATTTTAACAACTTTTG</pcr_primer_p1>
		<pcr_primer_p2>TTCTTTAGTATCTACCGTCAACAA</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CTTTTAGCTTATTTTAACAACTTTTGTAACTACCGTAAACTCTCTCATAGAGCGCCCCTCAAACCGTCAACTTCGAGCCCATATATCTCGGTTCTTGTTAAAGATATCAAAAAGTAGTCTATTAACAACGTTTTATTGATATTATGGTAATTATTATGTTAGTTGACCACTTTTTGATATCTTTAACAGGAACAGAGATAAATTGGCTCAAAGTTAAAAGTGAGGGAGCCCTTATATTACAGGTTTTACGTTATACGGCATGTTTCCTGTAAAAGATATCAAAAAAGTGTCAAATGATACAATGTTTTTGATATCATGATAAACAATTTATCAGTTTACAAATTTTCGAATCTTTGATAAGAACCTAGATAAATTGGCTCAAAGTTGAAAGTTGGGGGTGGCGTCCTATTAGATTGTTGACGGTAGATACTAAAGAA</canonical_amplicon>
		<polymorphic_amplicon>CTTTTAGCTTATTTTAACAACTTTTGTAACTACCGTAAACTCTCTCATAGAGCGCCCCTCAAACCGTCAACTTCGAGCCCATATATCTCGGTTCTTGTTAAAGATATCAAAAAGTAGTCTATTAACAACRTTTTATTGATATTATGGTAATTATTATGTTAGTTGACCACTTTTTGATATCTTTAACAGGAACAGAGATAAATTGGCTCAAAGTTAAAAGTGAGGGAGCCCTTATATTACAGGTTTTACGTTATACGGCATGTTTCCTGTAAAAGATATCAAAAAAGTGTCAAATGATACAATGTTTTTGATATCATGATAAACAATTTATCAGTTTACAAATTTTCGAATCTTTGATAAGAACCTAGATAAATTGGCTCAAAGTTGAAAGTTGGGGGTGGCGTCCTATTAGATTGTTGACGGTAGATACTAAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28245</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>47557</contig_pos>
        <strand></strand>
        <context>gggagccctt[A/C]tattacaggt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAACAGGAACAGAGATAAATTGGCTCAAAGTTAAAAGTGAGGGAGCCCTT</left_flank>
        <right_flank>TATTACAGGTTTTACGTTATACGGCATGTTTCCTGTAAAAGATATCAAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTACGAGAACTCTCATGCATTTCGCAATTTCCTCTCTTTTCCCCTCATCATTTTGTGCTTCCACACATCTCTTCGGTTTTTTTTCGGAAACAAAAAAATGACTCAGATGACGCCTTCTTGGGTCATGCCATAACTTTGTTATATGTTTACATGTCCGAGGGATGGAGGTCGCCAATTCTTCTTCTTCTTTTTTTGCGACTTCGGTGGCTACTATTACGTTCTGTTTGAATTAGGATTCTGGGATTTATTCTTACACATCGTGTACTTTTAGCTTATTTTAACAACTTTTGTAACTACCGTAAACTCTCTCATAGAGCGCCCCTCAAACCGTCAACTTCGAGCCCATATATCTCGGTTCTTGTTAAAGATATCAAAAAGTAGTCTATTAACAACGTTTTATTGATATTATGGTAATTATTATGTTAGTTGACCACTTTTTGATATCTTTAACAGGAACAGAGATAAATTGGCTCAAAGTTAAAAGTGAGGGAGCCCTTATATTACAGGTTTTACGTTATACGGCATGTTTCCTGTAAAAGATATCAAAAAAGTGTCAAATGATACAATGTTTTTGATATCATGATAAACAATTTATCAGTTTACAAATTTTCGAATCTTTGATAAGAACCTAGATAAATTGGCTCAAAGTTGAAAGTTGGGGGTGGCGTCCTATTAGATTGTTGACGGTAGATACTAAAGAAAAATTTGTAATCCTGCGTTCGGATAATTAAATAATGTTTGAATAGCTACAGTAATCCAAATCATGCTCATCCTTGTATTTGAATGTTTCACAACCGCATAATCTGCTCTTATCCATTGCCGCTTTCCATGTCCATTAAACAATTCCATCTGCTGCCACCATTTTAGTTCAAATTTGCATATAGCGAGTATATGATCCTCTCCTTCCACACGTCGTCCTTCTGTCGGGGGGTCGCTTCTCATCTCGCATGTTCATCCGACCATAATCTTTCTGCGTTTCCCACGATCACACACTCTAT</canonical>
            <polymorphic>GTTTACGAGAACTCTCATGCATTTCGCAATTTCCTCTCTTTTCCCCTCATCATTTTGTGCTTCCACACATCTCTTCGGTTTTTTTTCGGAAACAAAAAAATGACTCAGATGACGCCTTCTTGGGTCATGCCATAACTTTGTTATATGTTTACATGTCCGAGGGATGGAGGTCGCCAATTCTTCTTCTTCTTTTTTTGCGACTTCGGTGGCTACTATTACGTTCTGTTTGAATTAGGATTCTGGGATTTATTCTTACACATCGTGTACTTTTAGCTTATTTTAACAACTTTTGTAACTACCGTAAACTCTCTCATAGAGCGCCCCTCAAACCGTCAACTTCGAGCCCATATATCTCGGTTCTTGTTAAAGATATCAAAAAGTAGTCTATTAACAACGTTTTATTGATATTATGGTAATTATTATGTTAGTTGACCACTTTTTGATATCTTTAACAGGAACAGAGATAAATTGGCTCAAAGTTAAAAGTGAGGGAGCCCTTMTATTACAGGTTTTACGTTATACGGCATGTTTCCTGTAAAAGATATCAAAAAAGTGTCAAATGATACAATGTTTTTGATATCATGATAAACAATTTATCAGTTTACAAATTTTCGAATCTTTGATAAGAACCTAGATAAATTGGCTCAAAGTTGAAAGTTGGGGGTGGCGTCCTATTAGATTGTTGACGGTAGATACTAAAGAAAAATTTGTAATCCTGCGTTCGGATAATTAAATAATGTTTGAATAGCTACAGTAATCCAAATCATGCTCATCCTTGTATTTGAATGTTTCACAACCGCATAATCTGCTCTTATCCATTGCCGCTTTCCATGTCCATTAAACAATTCCATCTGCTGCCACCATTTTAGTTCAAATTTGCATATAGCGAGTATATGATCCTCTCCTTCCACACGTCGTCCTTCTGTCGGGGGGTCGCTTCTCATCTCGCATGTTCATCCGACCATAATCTTTCTGCGTTTCCCACGATCACACACTCTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTAGCTTATTTTAACAACTTTTG</pcr_primer_p1>
		<pcr_primer_p2>TTCTTTAGTATCTACCGTCAACAA</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CTTTTAGCTTATTTTAACAACTTTTGTAACTACCGTAAACTCTCTCATAGAGCGCCCCTCAAACCGTCAACTTCGAGCCCATATATCTCGGTTCTTGTTAAAGATATCAAAAAGTAGTCTATTAACAACGTTTTATTGATATTATGGTAATTATTATGTTAGTTGACCACTTTTTGATATCTTTAACAGGAACAGAGATAAATTGGCTCAAAGTTAAAAGTGAGGGAGCCCTTATATTACAGGTTTTACGTTATACGGCATGTTTCCTGTAAAAGATATCAAAAAAGTGTCAAATGATACAATGTTTTTGATATCATGATAAACAATTTATCAGTTTACAAATTTTCGAATCTTTGATAAGAACCTAGATAAATTGGCTCAAAGTTGAAAGTTGGGGGTGGCGTCCTATTAGATTGTTGACGGTAGATACTAAAGAA</canonical_amplicon>
		<polymorphic_amplicon>CTTTTAGCTTATTTTAACAACTTTTGTAACTACCGTAAACTCTCTCATAGAGCGCCCCTCAAACCGTCAACTTCGAGCCCATATATCTCGGTTCTTGTTAAAGATATCAAAAAGTAGTCTATTAACAACGTTTTATTGATATTATGGTAATTATTATGTTAGTTGACCACTTTTTGATATCTTTAACAGGAACAGAGATAAATTGGCTCAAAGTTAAAAGTGAGGGAGCCCTTMTATTACAGGTTTTACGTTATACGGCATGTTTCCTGTAAAAGATATCAAAAAAGTGTCAAATGATACAATGTTTTTGATATCATGATAAACAATTTATCAGTTTACAAATTTTCGAATCTTTGATAAGAACCTAGATAAATTGGCTCAAAGTTGAAAGTTGGGGGTGGCGTCCTATTAGATTGTTGACGGTAGATACTAAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28246</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>47573</contig_pos>
        <strand></strand>
        <context>caggttttac[G/T]TTATACGGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATTGGCTCAAAGTTAAAAGTGAGGGAGCCCTTATATTACAGGTTTTAC</left_flank>
        <right_flank>TTATACGGCATGTTTCCTGTAAAAGATATCAAAAAAGTGTCAAATGATAC</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGCATTTCGCAATTTCCTCTCTTTTCCCCTCATCATTTTGTGCTTCCACACATCTCTTCGGTTTTTTTTCGGAAACAAAAAAATGACTCAGATGACGCCTTCTTGGGTCATGCCATAACTTTGTTATATGTTTACATGTCCGAGGGATGGAGGTCGCCAATTCTTCTTCTTCTTTTTTTGCGACTTCGGTGGCTACTATTACGTTCTGTTTGAATTAGGATTCTGGGATTTATTCTTACACATCGTGTACTTTTAGCTTATTTTAACAACTTTTGTAACTACCGTAAACTCTCTCATAGAGCGCCCCTCAAACCGTCAACTTCGAGCCCATATATCTCGGTTCTTGTTAAAGATATCAAAAAGTAGTCTATTAACAACGTTTTATTGATATTATGGTAATTATTATGTTAGTTGACCACTTTTTGATATCTTTAACAGGAACAGAGATAAATTGGCTCAAAGTTAAAAGTGAGGGAGCCCTTATATTACAGGTTTTACGTTATACGGCATGTTTCCTGTAAAAGATATCAAAAAAGTGTCAAATGATACAATGTTTTTGATATCATGATAAACAATTTATCAGTTTACAAATTTTCGAATCTTTGATAAGAACCTAGATAAATTGGCTCAAAGTTGAAAGTTGGGGGTGGCGTCCTATTAGATTGTTGACGGTAGATACTAAAGAAAAATTTGTAATCCTGCGTTCGGATAATTAAATAATGTTTGAATAGCTACAGTAATCCAAATCATGCTCATCCTTGTATTTGAATGTTTCACAACCGCATAATCTGCTCTTATCCATTGCCGCTTTCCATGTCCATTAAACAATTCCATCTGCTGCCACCATTTTAGTTCAAATTTGCATATAGCGAGTATATGATCCTCTCCTTCCACACGTCGTCCTTCTGTCGGGGGGTCGCTTCTCATCTCGCATGTTCATCCGACCATAATCTTTCTGCGTTTCCCACGATCACACACTCTATCGCTTCTTCCATCCAT</canonical>
            <polymorphic>ATGCATTTCGCAATTTCCTCTCTTTTCCCCTCATCATTTTGTGCTTCCACACATCTCTTCGGTTTTTTTTCGGAAACAAAAAAATGACTCAGATGACGCCTTCTTGGGTCATGCCATAACTTTGTTATATGTTTACATGTCCGAGGGATGGAGGTCGCCAATTCTTCTTCTTCTTTTTTTGCGACTTCGGTGGCTACTATTACGTTCTGTTTGAATTAGGATTCTGGGATTTATTCTTACACATCGTGTACTTTTAGCTTATTTTAACAACTTTTGTAACTACCGTAAACTCTCTCATAGAGCGCCCCTCAAACCGTCAACTTCGAGCCCATATATCTCGGTTCTTGTTAAAGATATCAAAAAGTAGTCTATTAACAACGTTTTATTGATATTATGGTAATTATTATGTTAGTTGACCACTTTTTGATATCTTTAACAGGAACAGAGATAAATTGGCTCAAAGTTAAAAGTGAGGGAGCCCTTATATTACAGGTTTTACKTTATACGGCATGTTTCCTGTAAAAGATATCAAAAAAGTGTCAAATGATACAATGTTTTTGATATCATGATAAACAATTTATCAGTTTACAAATTTTCGAATCTTTGATAAGAACCTAGATAAATTGGCTCAAAGTTGAAAGTTGGGGGTGGCGTCCTATTAGATTGTTGACGGTAGATACTAAAGAAAAATTTGTAATCCTGCGTTCGGATAATTAAATAATGTTTGAATAGCTACAGTAATCCAAATCATGCTCATCCTTGTATTTGAATGTTTCACAACCGCATAATCTGCTCTTATCCATTGCCGCTTTCCATGTCCATTAAACAATTCCATCTGCTGCCACCATTTTAGTTCAAATTTGCATATAGCGAGTATATGATCCTCTCCTTCCACACGTCGTCCTTCTGTCGGGGGGTCGCTTCTCATCTCGCATGTTCATCCGACCATAATCTTTCTGCGTTTCCCACGATCACACACTCTATCGCTTCTTCCATCCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>398 202 176 120 104</canonical_bands>
                <polymorphic_bands>518 202 176 104</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTTAGCTTATTTTAACAACTTTTG</pcr_primer_p1>
		<pcr_primer_p2>TTCTTTAGTATCTACCGTCAACAA</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CTTTTAGCTTATTTTAACAACTTTTGTAACTACCGTAAACTCTCTCATAGAGCGCCCCTCAAACCGTCAACTTCGAGCCCATATATCTCGGTTCTTGTTAAAGATATCAAAAAGTAGTCTATTAACAACGTTTTATTGATATTATGGTAATTATTATGTTAGTTGACCACTTTTTGATATCTTTAACAGGAACAGAGATAAATTGGCTCAAAGTTAAAAGTGAGGGAGCCCTTATATTACAGGTTTTACGTTATACGGCATGTTTCCTGTAAAAGATATCAAAAAAGTGTCAAATGATACAATGTTTTTGATATCATGATAAACAATTTATCAGTTTACAAATTTTCGAATCTTTGATAAGAACCTAGATAAATTGGCTCAAAGTTGAAAGTTGGGGGTGGCGTCCTATTAGATTGTTGACGGTAGATACTAAAGAA</canonical_amplicon>
		<polymorphic_amplicon>CTTTTAGCTTATTTTAACAACTTTTGTAACTACCGTAAACTCTCTCATAGAGCGCCCCTCAAACCGTCAACTTCGAGCCCATATATCTCGGTTCTTGTTAAAGATATCAAAAAGTAGTCTATTAACAACGTTTTATTGATATTATGGTAATTATTATGTTAGTTGACCACTTTTTGATATCTTTAACAGGAACAGAGATAAATTGGCTCAAAGTTAAAAGTGAGGGAGCCCTTATATTACAGGTTTTACKTTATACGGCATGTTTCCTGTAAAAGATATCAAAAAAGTGTCAAATGATACAATGTTTTTGATATCATGATAAACAATTTATCAGTTTACAAATTTTCGAATCTTTGATAAGAACCTAGATAAATTGGCTCAAAGTTGAAAGTTGGGGGTGGCGTCCTATTAGATTGTTGACGGTAGATACTAAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28247</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>81666</contig_pos>
        <strand>+</strand>
        <context>TTTTCAGAAT[A/G]TTGATTCTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGAATCACTCGTTTTCGAGAACTTGATCATTCAGATCTATTTTCAGAAT</left_flank>
        <right_flank>TTGATTCTGAAAATAATTGTATCTGAGCAGACATTAAATTCTTAAAAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGTGAGTTGGATGAATTTCTAGAGAAGAAAATGAGTCATACTGTAGAAAAAATGGAAAAAGAAGAAGAAGAAGAAAACAAAGAAGGAGGAGTCAGGAGAAAAGTAGAAAAAAAGGGAATTGTAGTTCATCAGAAAACGGATAACCATATACAAAAACCTCGATTTTGGTTTTCGAAGAATTCATTTTTTAAAATGATTTTTGTTAGAGAATTTTCCTTCCAAACTACCGTATTTCCTCTAATAAAGCCCACACAAACATTAATTTTGAACACAATTATATCGACTTCTACGAAAAATATCAAAAAGTTGTTCACTGATAAATTGTTTATCATCATATCAGAAATGATTTACCAGTTGAACAATTTTTGATAACTTTTACAGAAAATGAGATCTATGAGCTCAGATCAACTGTTTGAGATGCTCCTGTAAAAAATTAGTTTTCTGGCTGATGAATCACTCGTTTTCGAGAACTTGATCATTCAGATCTATTTTCAGAATATTGATTCTGAAAATAATTGTATCTGAGCAGACATTAAATTCTTAAAAAAGTTGCTGGCAGTTCTGAATTTAGTCTATTCCTCCCACTCTAAAACTTTCAATGAATTCCAGAACTCGACTGACTCCTACCTTCGTCACAACGGACCTTCAAACGTAGTGTCCCAATCATTACAACGGCGACATTCCACTCATCAAACACACCCGGATCCAAATGATCGTGAGTTTTTTCGCAAACACAATAATTTGGGTTTTTCGTGATTCTTGTTTTTTTTTTCGTCTTCTGAAATGTTATGGCTCCACGTCACCTGTTAGAAATAACAAAATGACGAGAAGAGGAGGTGATGAATAATAGTCAACCAACATGGTTTACAATTTTTTTAGATAGGGAATGTTTCAGAATCGACTGAAAAGGTGATGGAGATCGATAAGCTGCTGATCTCCCGAGCTGATGGTGTCGATGTGGCATTTGAACGGACGAAAGCATGGAGCACTTACAGTAAG</canonical>
            <polymorphic>GGGTGAGTTGGATGAATTTCTAGAGAAGAAAATGAGTCATACTGTAGAAAAAATGGAAAAAGAAGAAGAAGAAGAAAACAAAGAAGGAGGAGTCAGGAGAAAAGTAGAAAAAAAGGGAATTGTAGTTCATCAGAAAACGGATAACCATATACAAAAACCTCGATTTTGGTTTTCGAAGAATTCATTTTTTAAAATGATTTTTGTTAGAGAATTTTCCTTCCAAACTACCGTATTTCCTCTAATAAAGCCCACACAAACATTAATTTTGAACACAATTATATCGACTTCTACGAAAAATATCAAAAAGTTGTTCACTGATAAATTGTTTATCATCATATCAGAAATGATTTACCAGTTGAACAATTTTTGATAACTTTTACAGAAAATGAGATCTATGAGCTCAGATCAACTGTTTGAGATGCTCCTGTAAAAAATTAGTTTTCTGGCTGATGAATCACTCGTTTTCGAGAACTTGATCATTCAGATCTATTTTCAGAATRTTGATTCTGAAAATAATTGTATCTGAGCAGACATTAAATTCTTAAAAAAGTTGCTGGCAGTTCTGAATTTAGTCTATTCCTCCCACTCTAAAACTTTCAATGAATTCCAGAACTCGACTGACTCCTACCTTCGTCACAACGGACCTTCAAACGTAGTGTCCCAATCATTACAACGGCGACATTCCACTCATCAAACACACCCGGATCCAAATGATCGTGAGTTTTTTCGCAAACACAATAATTTGGGTTTTTCGTGATTCTTGTTTTTTTTTTCGTCTTCTGAAATGTTATGGCTCCACGTCACCTGTTAGAAATAACAAAATGACGAGAAGAGGAGGTGATGAATAATAGTCAACCAACATGGTTTACAATTTTTTTAGATAGGGAATGTTTCAGAATCGACTGAAAAGGTGATGGAGATCGATAAGCTGCTGATCTCCCGAGCTGATGGTGTCGATGTGGCATTTGAACGGACGAAAGCATGGAGCACTTACAGTAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTAGTTTTCTGGCTGATG</pcr_primer_p1>
		<pcr_primer_p2>TGTAATGATTGGGACACTACG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AAAATTAGTTTTCTGGCTGATGAATCACTCGTTTTCGAGAACTTGATCATTCAGATCTATTTTCAGAATATTGATTCTGAAAATAATTGTATCTGAGCAGACATTAAATTCTTAAAAAAGTTGCTGGCAGTTCTGAATTTAGTCTATTCCTCCCACTCTAAAACTTTCAATGAATTCCAGAACTCGACTGACTCCTACCTTCGTCACAACGGACCTTCAAACGTAGTGTCCCAATCATTACA</canonical_amplicon>
		<polymorphic_amplicon>AAAATTAGTTTTCTGGCTGATGAATCACTCGTTTTCGAGAACTTGATCATTCAGATCTATTTTCAGAATRTTGATTCTGAAAATAATTGTATCTGAGCAGACATTAAATTCTTAAAAAAGTTGCTGGCAGTTCTGAATTTAGTCTATTCCTCCCACTCTAAAACTTTCAATGAATTCCAGAACTCGACTGACTCCTACCTTCGTCACAACGGACCTTCAAACGTAGTGTCCCAATCATTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28248</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>128434</contig_pos>
        <strand>+</strand>
        <context>TAGAACCGTA[C/G]GGATCTCTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAATGAACATTTAATCCATCCACTACCAAATCGGAAATCTAGAACCGTA</left_flank>
        <right_flank>GGATCTCTCGAAAACTTTTTCAATGTTCTGGTTTCAGGAAAACAACCACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGCGTTCAAAAAAATCTGAAAGTTCACAAGTAATCAGAAATTTCAAGCTATCATCTCATGTCCGTAGGTTCTAGAGTTCGATTTTGAAAAATATACTGTCTGGTGTCAATTTTTTGGTAGGAAAATGTGACAATTGAACCTAAAAAAAGGAGATAAAAAATTAGAGAAAAGAACAAAATGAAAAAATAATTCAGAAGATCTGGGGAAAATGATGCGAAATTGGGCGATTTTTGTGTCGATTTAGGCACTCGTCTCTCCGGTTTCTCCGTCCTTGCCACCGAGAGCACGTTATTGCCTCTGAAAATTTGGTATTTTAAAATCAAAAATACACAAAAAATGATCTAAAATTTATTAAAAATGGCACAAACAGGCTCAAAATGGTCCAAAATTCACTAAAAAATGACCAAAATTTTGCTAACACAAACCACAATTGACCGAAAGTGGTCTAAAATGAACATTTAATCCATCCACTACCAAATCGGAAATCTAGAACCGTAGGGATCTCTCGAAAACTTTTTCAATGTTCTGGTTTCAGGAAAACAACCACATGGTGCCTCTATTATAAACCCAACAGACTTGGCCAACTCAGAGTTTTAATTTTTGTTGTTTGATTTTTTTTTGTGTATTTTGTTGGTTACCATGTCTTTTTTGCTTCCCTGTTGTAAAATAAGAACAACATGTCACATATCCGAACGCTTTCCATTATTCCACTTTGCCCTCCAAAGTGCTGTGTTTTTCAATTAAATTCCTCGTCCAACTCTTTCGAACAACAGAGCACAACAACAAAAATGTAATCATCTCAATCGCCATGTTAATCTAACTCCTAATATAGTTCGACTTTTTCAGTTTCTTTTCTTCCAGGAATCAGATTTCGCTCTGTTTTTTTAATCAATCAGAAATTTTCGGTATTCCAATTATTGATTTCAACGGATTTTCCATGGAACAGACTTTGGAGTCGTGCTTCCAAAGCGGTAAACATCTGGGAAAAGGGTCTGACC</canonical>
            <polymorphic>AAAGCGTTCAAAAAAATCTGAAAGTTCACAAGTAATCAGAAATTTCAAGCTATCATCTCATGTCCGTAGGTTCTAGAGTTCGATTTTGAAAAATATACTGTCTGGTGTCAATTTTTTGGTAGGAAAATGTGACAATTGAACCTAAAAAAAGGAGATAAAAAATTAGAGAAAAGAACAAAATGAAAAAATAATTCAGAAGATCTGGGGAAAATGATGCGAAATTGGGCGATTTTTGTGTCGATTTAGGCACTCGTCTCTCCGGTTTCTCCGTCCTTGCCACCGAGAGCACGTTATTGCCTCTGAAAATTTGGTATTTTAAAATCAAAAATACACAAAAAATGATCTAAAATTTATTAAAAATGGCACAAACAGGCTCAAAATGGTCCAAAATTCACTAAAAAATGACCAAAATTTTGCTAACACAAACCACAATTGACCGAAAGTGGTCTAAAATGAACATTTAATCCATCCACTACCAAATCGGAAATCTAGAACCGTASGGATCTCTCGAAAACTTTTTCAATGTTCTGGTTTCAGGAAAACAACCACATGGTGCCTCTATTATAAACCCAACAGACTTGGCCAACTCAGAGTTTTAATTTTTGTTGTTTGATTTTTTTTTGTGTATTTTGTTGGTTACCATGTCTTTTTTGCTTCCCTGTTGTAAAATAAGAACAACATGTCACATATCCGAACGCTTTCCATTATTCCACTTTGCCCTCCAAAGTGCTGTGTTTTTCAATTAAATTCCTCGTCCAACTCTTTCGAACAACAGAGCACAACAACAAAAATGTAATCATCTCAATCGCCATGTTAATCTAACTCCTAATATAGTTCGACTTTTTCAGTTTCTTTTCTTCCAGGAATCAGATTTCGCTCTGTTTTTTTAATCAATCAGAAATTTTCGGTATTCCAATTATTGATTTCAACGGATTTTCCATGGAACAGACTTTGGAGTCGTGCTTCCAAAGCGGTAAACATCTGGGAAAAGGGTCTGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCTCTGAAAATTTGGTATTT</pcr_primer_p1>
		<pcr_primer_p2>GGGTTTATAATAGAGGCACCAT</pcr_primer_p2>
		<pcr_amplicon_size>276</pcr_amplicon_size>
		<canonical_amplicon>GCCTCTGAAAATTTGGTATTTTAAAATCAAAAATACACAAAAAATGATCTAAAATTTATTAAAAATGGCACAAACAGGCTCAAAATGGTCCAAAATTCACTAAAAAATGACCAAAATTTTGCTAACACAAACCACAATTGACCGAAAGTGGTCTAAAATGAACATTTAATCCATCCACTACCAAATCGGAAATCTAGAACCGTAGGGATCTCTCGAAAACTTTTTCAATGTTCTGGTTTCAGGAAAACAACCACATGGTGCCTCTATTATAAACCC</canonical_amplicon>
		<polymorphic_amplicon>GCCTCTGAAAATTTGGTATTTTAAAATCAAAAATACACAAAAAATGATCTAAAATTTATTAAAAATGGCACAAACAGGCTCAAAATGGTCCAAAATTCACTAAAAAATGACCAAAATTTTGCTAACACAAACCACAATTGACCGAAAGTGGTCTAAAATGAACATTTAATCCATCCACTACCAAATCGGAAATCTAGAACCGTASGGATCTCTCGAAAACTTTTTCAATGTTCTGGTTTCAGGAAAACAACCACATGGTGCCTCTATTATAAACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28249</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>184395</contig_pos>
        <strand>+</strand>
        <context>attgtttctg[C/T]gcaatgtttg</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAACCGATAAAAATTAATCAAAAACCCAAAAATAATTTAATTGTTTCTG</left_flank>
        <right_flank>GCAATGTTTGCTATTTGTCGGACCTGTGTAAAAAATCAAAATCGATGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGATTGATTTCCGAACAATTTAAAGGGAAAAACGGCGACGAGTGGATGGAATGGATAAAGAGAGAAAATGTTGCATTTTGCATGCCTGAACTAGTTTTTACAGTCTTATGAGATTATGCAGATTTTTAGTTTCGAAAGTGTGACTTATTTGACCAGTAAGAGGATTAGTCTATATGAAAATGGTAAACTGAAAATGGTGAATGATGAAGGTCACGAATTTTGTACTGAAAGTGCTTGATATTTTTGGGAATTCGCCAAGGATCAGCGACTCACAATCAGACCATTTACAGAAATTCGGTAAAAGATACAAATCAGAAACGTTGCGGCTTAAAATTCTAGGGTGGGCGGATCTTAAAGGCACATTTAAAGGATCAATTTTCGTAATTATTTACTGGCATATCATTTTTTTTTAGGGATTTTAAGTATTTTTGAATAAAAAAGAGGCTCTAAACCGATAAAAATTAATCAAAAACCCAAAAATAATTTAATTGTTTCTGTGCAATGTTTGCTATTTGTCGGACCTGTGTAAAAAATCAAAATCGATGAAATTCATTAAAAAAAAGAAAAATAGGCCAGAGAATAATTCTGAAAATACATGCTTCTTCAAATGCGCCTTTAAAAATTTCGCTACTGGAACTAAGCTCCGCACACTCTCCAATTTTCGAAAAGTTGTCTGAAGAAATGGAAAGTTGTCTGAAGAAAGGTAGTTTTCAGAATGAGCTTCATCTAGGGACCTCTTATCGATTTCTAAAGTTTCCTGAAGCCAGACATATCACTTCAAGGTGAAATGATTTTTGTCTGTCTCGCTTTTGAAACCACAACTTTTTTCTGTTTGAGCAAAGAAATGGAACATTAAAAAAATGAGAGCATTGATTGAAATGATGCAGATCTTGGATCAACGACATCTACTTATACAAATAAAATGGGACCAATCCCATATTCAAAAACGAAGAATAAAGAAAAAATGAGAACATTTGGAATGCCCTTGGGACTAGAAA</canonical>
            <polymorphic>TTTGATTGATTTCCGAACAATTTAAAGGGAAAAACGGCGACGAGTGGATGGAATGGATAAAGAGAGAAAATGTTGCATTTTGCATGCCTGAACTAGTTTTTACAGTCTTATGAGATTATGCAGATTTTTAGTTTCGAAAGTGTGACTTATTTGACCAGTAAGAGGATTAGTCTATATGAAAATGGTAAACTGAAAATGGTGAATGATGAAGGTCACGAATTTTGTACTGAAAGTGCTTGATATTTTTGGGAATTCGCCAAGGATCAGCGACTCACAATCAGACCATTTACAGAAATTCGGTAAAAGATACAAATCAGAAACGTTGCGGCTTAAAATTCTAGGGTGGGCGGATCTTAAAGGCACATTTAAAGGATCAATTTTCGTAATTATTTACTGGCATATCATTTTTTTTTAGGGATTTTAAGTATTTTTGAATAAAAAAGAGGCTCTAAACCGATAAAAATTAATCAAAAACCCAAAAATAATTTAATTGTTTCTGYGCAATGTTTGCTATTTGTCGGACCTGTGTAAAAAATCAAAATCGATGAAATTCATTAAAAAAAAGAAAAATAGGCCAGAGAATAATTCTGAAAATACATGCTTCTTCAAATGCGCCTTTAAAAATTTCGCTACTGGAACTAAGCTCCGCACACTCTCCAATTTTCGAAAAGTTGTCTGAAGAAATGGAAAGTTGTCTGAAGAAAGGTAGTTTTCAGAATGAGCTTCATCTAGGGACCTCTTATCGATTTCTAAAGTTTCCTGAAGCCAGACATATCACTTCAAGGTGAAATGATTTTTGTCTGTCTCGCTTTTGAAACCACAACTTTTTTCTGTTTGAGCAAAGAAATGGAACATTAAAAAAATGAGAGCATTGATTGAAATGATGCAGATCTTGGATCAACGACATCTACTTATACAAATAAAATGGGACCAATCCCATATTCAAAAACGAAGAATAAAGAAAAAATGAGAACATTTGGAATGCCCTTGGGACTAGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>385 381 114 75 38 7</canonical_bands>
                <polymorphic_bands>766 114 75 38 7</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>180 139 125 122 96 71 57 46 39 33 27 20 17 14 10 2 2</canonical_bands>
                <polymorphic_bands>180 166 125 122 96 71 57 46 39 33 20 17 14 10 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGCTCTAAACCGATAAAAATTA</pcr_primer_p1>
		<pcr_primer_p2>ACTTTCCATTTCTTCAGACAACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGGCTCTAAACCGATAAAAATTAATCAAAAACCCAAAAATAATTTAATTGTTTCTGTGCAATGTTTGCTATTTGTCGGACCTGTGTAAAAAATCAAAATCGATGAAATTCATTAAAAAAAAGAAAAATAGGCCAGAGAATAATTCTGAAAATACATGCTTCTTCAAATGCGCCTTTAAAAATTTCGCTACTGGAACTAAGCTCCGCACACTCTCCAATTTTCGAAAAGTTGTCTGAAGAAATGGAAAGT</canonical_amplicon>
		<polymorphic_amplicon>AGGCTCTAAACCGATAAAAATTAATCAAAAACCCAAAAATAATTTAATTGTTTCTGYGCAATGTTTGCTATTTGTCGGACCTGTGTAAAAAATCAAAATCGATGAAATTCATTAAAAAAAAGAAAAATAGGCCAGAGAATAATTCTGAAAATACATGCTTCTTCAAATGCGCCTTTAAAAATTTCGCTACTGGAACTAAGCTCCGCACACTCTCCAATTTTCGAAAAGTTGTCTGAAGAAATGGAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28250</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>207994</contig_pos>
        <strand>+</strand>
        <context>AGCCATTTCT[C/G]TGATATATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAGGATATTCTTCAATTTATGCGCAACAAGGACTCACAATAGCCATTTCT</left_flank>
        <right_flank>TGATATATTTTTCTAGCTTGTCAAATTGTATATTTCGCATAACGTTCCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTAGAAAGTTTGCTCCGTCAGACGGACTTCAATGGATTCCCAGTTGTTGTTTCACAAAACAGTATGCATTTGGTAGGATTCATTACACGGTACGGAGCATTCTTCGAAGTTTTTGATTTATAAAATAAAATTTTGCAGACGAGACATACTCCTTGCTCTGCACACAGCTCGAAAAACTCAGCCTTATGTTGTCACCAACTCGATTGCGTATTTCTCGGATGGTGTACCTGATTCCGTGCCCGGAGGACCAGCGCCGCTGAGATTACGAAAGATTTTAGATATGGTGAGTACCGTATTATTCTTAAGCTATCCATGAAATTTCTTCAGGCTCCAATGACAGTCACAGACCAAACTCCTATGGAAACCGTAATCGATATGTTCCGAAAACTCGGACTTCGACATGTATTGGTTACGAAAAACGGAAAGGTGCTTGGAATCATCACAAAGAAGGATATTCTTCAATTTATGCGCAACAAGGACTCACAATAGCCATTTCTCTGATATATTTTTCTAGCTTGTCAAATTGTATATTTCGCATAACGTTCCTTCTTCCTTTACTAGTCTTTACTTTCCCACCTTGCTCATCATCTCTACGCCCATTTCAAGTCAATTTGTCATCCGTTTCACTTTTTTTGCTTTCTTTTCCCTCCTTTCCCTATAGTTCTATCATTTGTGAGCTTCCTGTGTTTTTCCATGCATTCATTGAACAATTAATTTATTCAGATATTTATTTACAGAGATTTTATCATAAACTATTCAATACATCTGCTCAAGTATGCACAGCAGATTAAAAAAATAGAAAAAGGGAAAAATGGATGATTCAACAATTGAGTCATTGCCCATTTGAATTTTCACATTCTCTGCCCCACTTCGGAACTGATAACGGAAATGTGCGATTCATTTGATGAGAAACGAGCAAGTTTCCGTTGGCTTTTTGTCTATTTGACAACCCACTTGTTGTAATAATGTCGTGGTGTTGATGAAACCCAAACACCCAG</canonical>
            <polymorphic>ATTTAGAAAGTTTGCTCCGTCAGACGGACTTCAATGGATTCCCAGTTGTTGTTTCACAAAACAGTATGCATTTGGTAGGATTCATTACACGGTACGGAGCATTCTTCGAAGTTTTTGATTTATAAAATAAAATTTTGCAGACGAGACATACTCCTTGCTCTGCACACAGCTCGAAAAACTCAGCCTTATGTTGTCACCAACTCGATTGCGTATTTCTCGGATGGTGTACCTGATTCCGTGCCCGGAGGACCAGCGCCGCTGAGATTACGAAAGATTTTAGATATGGTGAGTACCGTATTATTCTTAAGCTATCCATGAAATTTCTTCAGGCTCCAATGACAGTCACAGACCAAACTCCTATGGAAACCGTAATCGATATGTTCCGAAAACTCGGACTTCGACATGTATTGGTTACGAAAAACGGAAAGGTGCTTGGAATCATCACAAAGAAGGATATTCTTCAATTTATGCGCAACAAGGACTCACAATAGCCATTTCTSTGATATATTTTTCTAGCTTGTCAAATTGTATATTTCGCATAACGTTCCTTCTTCCTTTACTAGTCTTTACTTTCCCACCTTGCTCATCATCTCTACGCCCATTTCAAGTCAATTTGTCATCCGTTTCACTTTTTTTGCTTTCTTTTCCCTCCTTTCCCTATAGTTCTATCATTTGTGAGCTTCCTGTGTTTTTCCATGCATTCATTGAACAATTAATTTATTCAGATATTTATTTACAGAGATTTTATCATAAACTATTCAATACATCTGCTCAAGTATGCACAGCAGATTAAAAAAATAGAAAAAGGGAAAAATGGATGATTCAACAATTGAGTCATTGCCCATTTGAATTTTCACATTCTCTGCCCCACTTCGGAACTGATAACGGAAATGTGCGATTCATTTGATGAGAAACGAGCAAGTTTCCGTTGGCTTTTTGTCTATTTGACAACCCACTTGTTGTAATAATGTCGTGGTGTTGATGAAACCCAAACACCCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>223 197 165 151 125 108 22 9</canonical_bands>
                <polymorphic_bands>331 197 165 151 125 22 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAATCATCACAAAGAAGGATA</pcr_primer_p1>
		<pcr_primer_p2>GGAAGCTCACAAATGATAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAATCATCACAAAGAAGGATATTCTTCAATTTATGCGCAACAAGGACTCACAATAGCCATTTCTCTGATATATTTTTCTAGCTTGTCAAATTGTATATTTCGCATAACGTTCCTTCTTCCTTTACTAGTCTTTACTTTCCCACCTTGCTCATCATCTCTACGCCCATTTCAAGTCAATTTGTCATCCGTTTCACTTTTTTTGCTTTCTTTTCCCTCCTTTCCCTATAGTTCTATCATTTGTGAGCTTCC</canonical_amplicon>
		<polymorphic_amplicon>GGAATCATCACAAAGAAGGATATTCTTCAATTTATGCGCAACAAGGACTCACAATAGCCATTTCTSTGATATATTTTTCTAGCTTGTCAAATTGTATATTTCGCATAACGTTCCTTCTTCCTTTACTAGTCTTTACTTTCCCACCTTGCTCATCATCTCTACGCCCATTTCAAGTCAATTTGTCATCCGTTTCACTTTTTTTGCTTTCTTTTCCCTCCTTTCCCTATAGTTCTATCATTTGTGAGCTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28251</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>223197</contig_pos>
        <strand>+</strand>
        <context>GCTGGAATCG[A/G]TTTTTTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGATATTGTTTCCGGTCGCAGTTGACATGAAAAGCTCAAGCTGGAATCG</left_flank>
        <right_flank>TTTTTTTTTTGATAAAAAGGAATCTAGACAGTTGGTGGATTTAAAAATAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGTCAACAAGAACACTTGTCGCCGTCGTTTTCCGCCATTCTAAACTGCGTCTAATCCAGCGACATGCACTTGTTCGAAACTTGAGAATAAGTCAACTGTATGGCATAACGAAAGTGACGAAAATTGGTCTAGAGGAGATTTTCACTTAATTGGAGATGTTCTTATTTTTCGAGGAACACCTTAATTTTCCCATAATGTTCCCTATTCTTCATGTTTCGTTTTCTTTGTCGTCTTAGATTTTGTTCTGCTCTTCGACCTCTTTTCGCCCTGTGTTCTGTGTTTGCATTCCCGATTATTTTTGATGAATTAACTGAACTATTTGATGAGTTGTGTGGAAGAGAGAAGAAACGAAAGTGAAAGAAAAAAAGATAGGAAGAGCAGGAATTGATCATTCGGCTGGTTCCATCTGTGTTTTTTTCCTCATACAAACTCCCACGAACAGCTGATTTGATATTGTTTCCGGTCGCAGTTGACATGAAAAGCTCAAGCTGGAATCGTTTTTTTTTTTGATAAAAAGGAATCTAGACAGTTGGTGGATTTAAAAATAGCTAATCTGTGTCTTGATTCCATTTTATCAAGACACAGAGATATAAGAAAGACCTTGGGAAAAATCCAAAGTTTGTTTCGATATATAAAGTACGGAAACCGTAAAACCTGTAATAGAAGGGCTCCCTAACTTTAAACTTTGAGCTCAATCATCTCGGTTCTTGTCAAAGATATGAGAAAGTAATCAATTAATACATTTTTTATCATAATGTCATCAATATTTCATTAGTGTAAAGATTTTTGATATCTCTTATAGCAACTGACAAGGGAAGGCTTTTTAGACAACGGTTGAGAATTTTGGTTGATTACGACTGTTGATTTTCACATTTCTCAACTTCCGATTTGCAGAATTTGAAAAGTTAGAAAAGATTGAAAAATAAGGTAAGCTGTATTTGAAGTTTACATTCTTACTGTAGTTTCTATAATTGCCCACTGCTCAGTAAAACTCCAGT</canonical>
            <polymorphic>CTAGTCAACAAGAACACTTGTCGCCGTCGTTTTCCGCCATTCTAAACTGCGTCTAATCCAGCGACATGCACTTGTTCGAAACTTGAGAATAAGTCAACTGTATGGCATAACGAAAGTGACGAAAATTGGTCTAGAGGAGATTTTCACTTAATTGGAGATGTTCTTATTTTTCGAGGAACACCTTAATTTTCCCATAATGTTCCCTATTCTTCATGTTTCGTTTTCTTTGTCGTCTTAGATTTTGTTCTGCTCTTCGACCTCTTTTCGCCCTGTGTTCTGTGTTTGCATTCCCGATTATTTTTGATGAATTAACTGAACTATTTGATGAGTTGTGTGGAAGAGAGAAGAAACGAAAGTGAAAGAAAAAAAGATAGGAAGAGCAGGAATTGATCATTCGGCTGGTTCCATCTGTGTTTTTTTCCTCATACAAACTCCCACGAACAGCTGATTTGATATTGTTTCCGGTCGCAGTTGACATGAAAAGCTCAAGCTGGAATCGRTTTTTTTTTTGATAAAAAGGAATCTAGACAGTTGGTGGATTTAAAAATAGCTAATCTGTGTCTTGATTCCATTTTATCAAGACACAGAGATATAAGAAAGACCTTGGGAAAAATCCAAAGTTTGTTTCGATATATAAAGTACGGAAACCGTAAAACCTGTAATAGAAGGGCTCCCTAACTTTAAACTTTGAGCTCAATCATCTCGGTTCTTGTCAAAGATATGAGAAAGTAATCAATTAATACATTTTTTATCATAATGTCATCAATATTTCATTAGTGTAAAGATTTTTGATATCTCTTATAGCAACTGACAAGGGAAGGCTTTTTAGACAACGGTTGAGAATTTTGGTTGATTACGACTGTTGATTTTCACATTTCTCAACTTCCGATTTGCAGAATTTGAAAAGTTAGAAAAGATTGAAAAATAAGGTAAGCTGTATTTGAAGTTTACATTCTTACTGTAGTTTCTATAATTGCCCACTGCTCAGTAAAACTCCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAGAGAAGAAACGAAAGTGA</pcr_primer_p1>
		<pcr_primer_p2>CTGTGTCTTGATAAAATGGAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAGAGAAGAAACGAAAGTGAAAGAAAAAAAGATAGGAAGAGCAGGAATTGATCATTCGGCTGGTTCCATCTGTGTTTTTTTCCTCATACAAACTCCCACGAACAGCTGATTTGATATTGTTTCCGGTCGCAGTTGACATGAAAAGCTCAAGCTGGAATCGTTTTTTTTTTTGATAAAAAGGAATCTAGACAGTTGGTGGATTTAAAAATAGCTAATCTGTGTCTTGATTCCATTTTATCAAGACACAG</canonical_amplicon>
		<polymorphic_amplicon>AAGAGAGAAGAAACGAAAGTGAAAGAAAAAAAGATAGGAAGAGCAGGAATTGATCATTCGGCTGGTTCCATCTGTGTTTTTTTCCTCATACAAACTCCCACGAACAGCTGATTTGATATTGTTTCCGGTCGCAGTTGACATGAAAAGCTCAAGCTGGAATCGRTTTTTTTTTTGATAAAAAGGAATCTAGACAGTTGGTGGATTTAAAAATAGCTAATCTGTGTCTTGATTCCATTTTATCAAGACACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28252</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>267131</contig_pos>
        <strand>+</strand>
        <context>CCAAGAAAAA[A/T]ATACTGTCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAATTCAAAAGGAACACTGAAAAGTTGATTATATGATTTTCCAAGAAAAA</left_flank>
        <right_flank>ATACTGTCTTTTCTTTAATAGAAGCCAAACTTTGAGCTCAATTATCTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCTTCATGCCTCATTCAGTCACTTCTGTCCGCTCACGGACAACAGCTTTCATCTCCTACCACCATTTTCTGATGCAATCCTCCTTCTCTTCATTCACTTTTTCATTTGCTTTTTGCTTAGAAAGAAAAACGAACACTTTTGGTTTCCTTTCACACATCCTCTGCGATTTCCCTTTCCTATACATGTCATCTTGATGGATTACAATTATCCTGAATCTTTTAAGACAGTGTTGGCTTTATCATTATTAGTTTCTGAACTCTATGGAATCTTCTAGAATCCAAGTGTTCACATTTCCTGTTCCCTATTAGTTCTCAGAATCAAATACATTAGCAAGATGATGACAAAACTTTCGATGACTCGAGTCAGACAGAATCTTTCCAACTTTTTCCTTTTTCTTCTTTTTTACATTCTAGTTTCTTTTTTACATTCTAGTTTTTTTTAAAAATTTAATTCAAAAGGAACACTGAAAAGTTGATTATATGATTTTCCAAGAAAAAAATACTGTCTTTTCTTTAATAGAAGCCAAACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATGGAAAATGTGTCCACTGATAAAATTTTGGTGATATTATGATAAACAATTTATTAGTTGAACAATTTTTTGATATCTTTGACAGGAATCTAGATAATTGAGCTCAAAGTTGACGGCTTGGTCTATGAGAGGAAATACGGTATTTCACTTTTTTTGAAAATTTGTCCTATTCTCAGTCTCAACACTTCTTTCTTGCTCTTCTCAGAATGTTCGATGATTTTCCTCCCACTGTCTAATATTTTTCTGAAGTTACACGGGTTCAGGTATCACTCGACAATTGCTCATTTGTTCTAGACACCATTTGAATGAAATATTAATTTAAAAATGTTTCTTTCTTATGATCAGAAGTTGGATATCTTGGGAAGACGCCCTTCTGTATTCATCATTTTTAACAGTAGTACTTTTTCGTTAAATTTGGAATCTCAGTAGACTAATG</canonical>
            <polymorphic>AAGCTTCATGCCTCATTCAGTCACTTCTGTCCGCTCACGGACAACAGCTTTCATCTCCTACCACCATTTTCTGATGCAATCCTCCTTCTCTTCATTCACTTTTTCATTTGCTTTTTGCTTAGAAAGAAAAACGAACACTTTTGGTTTCCTTTCACACATCCTCTGCGATTTCCCTTTCCTATACATGTCATCTTGATGGATTACAATTATCCTGAATCTTTTAAGACAGTGTTGGCTTTATCATTATTAGTTTCTGAACTCTATGGAATCTTCTAGAATCCAAGTGTTCACATTTCCTGTTCCCTATTAGTTCTCAGAATCAAATACATTAGCAAGATGATGACAAAACTTTCGATGACTCGAGTCAGACAGAATCTTTCCAACTTTTTCCTTTTTCTTCTTTTTTACATTCTAGTTTCTTTTTTACATTCTAGTTTTTTTTAAAAATTTAATTCAAAAGGAACACTGAAAAGTTGATTATATGATTTTCCAAGAAAAAWATACTGTCTTTTCTTTAATAGAAGCCAAACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATGGAAAATGTGTCCACTGATAAAATTTTGGTGATATTATGATAAACAATTTATTAGTTGAACAATTTTTTGATATCTTTGACAGGAATCTAGATAATTGAGCTCAAAGTTGACGGCTTGGTCTATGAGAGGAAATACGGTATTTCACTTTTTTTGAAAATTTGTCCTATTCTCAGTCTCAACACTTCTTTCTTGCTCTTCTCAGAATGTTCGATGATTTTCCTCCCACTGTCTAATATTTTTCTGAAGTTACACGGGTTCAGGTATCACTCGACAATTGCTCATTTGTTCTAGACACCATTTGAATGAAATATTAATTTAAAAATGTTTCTTTCTTATGATCAGAAGTTGGATATCTTGGGAAGACGCCCTTCTGTATTCATCATTTTTAACAGTAGTACTTTTTCGTTAAATTTGGAATCTCAGTAGACTAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAATTCAAAAGGAACACTGAA</pcr_primer_p1>
		<pcr_primer_p2>CCGTATTTCCTCTCATAGACC</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TTTAATTCAAAAGGAACACTGAAAAGTTGATTATATGATTTTCCAAGAAAAAAATACTGTCTTTTCTTTAATAGAAGCCAAACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATGGAAAATGTGTCCACTGATAAAATTTTGGTGATATTATGATAAACAATTTATTAGTTGAACAATTTTTTGATATCTTTGACAGGAATCTAGATAATTGAGCTCAAAGTTGACGGCTTGGTCTATGAGAGGAAATACGG</canonical_amplicon>
		<polymorphic_amplicon>TTTAATTCAAAAGGAACACTGAAAAGTTGATTATATGATTTTCCAAGAAAAAWATACTGTCTTTTCTTTAATAGAAGCCAAACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATGGAAAATGTGTCCACTGATAAAATTTTGGTGATATTATGATAAACAATTTATTAGTTGAACAATTTTTTGATATCTTTGACAGGAATCTAGATAATTGAGCTCAAAGTTGACGGCTTGGTCTATGAGAGGAAATACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28253</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>299149</contig_pos>
        <strand>+</strand>
        <context>TTAATGATTG[C/T]AAAAAAATTA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTAACTTTTGAACGATTATAATTGCGATTAACTTTGATTAATGATTG</left_flank>
        <right_flank>AAAAAAATTAATAAATTGTTTTCAAATTAAAAGTTTGTTTTCTTTTTGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTCTGAAACAATCTTTATTTTTCAGCAACAATACATATTTATTCATTATTGTGTTCTTCAAGTCCTTCAAGGATCTTCTCCATCACCCACGTCATCTTCATCAGGTGCTCATCACAACGCTGGTTTTGTACAAGATGGAATGATGGTCGAATCGGGATTCTGATTCTCCTTTTCTCCGAATATTTACCTTGTTCTAGTCTATTACTATTCGCCCTCTTCCCACATTCATTTTTCTTCCCATCCCATCCCACTTTTGTTCATTTTCTTCGGTATCAACGGGTTTTGTCTTCGTTATTTCCTTTTCATCTCCATCTCTTCCGTGACTCCACCTCCTTTTCCAATTTTCTGGAGATTATCAATTCTTTCAAAAAACGCGCGCTTCGATCCTACCGACGGGTAACAAACTATTGAAAAAAAACCGTATATTTATTAAATACGTAATTAGCTTTTTTAACTTTTGAACGATTATAATTGCGATTAACTTTGATTAATGATTGAAAAAAAATTAATAAATTGTTTTCAAATTAAAAGTTTGTTTTCTTTTTGTACAGGCAGAGGAATGTATTGAGAATTGGCAATAGTTGGGATTGAATGTCAGAACTTACAAGACAGAACAAACTATTTTTCTGGTACAAAGAAACCATAACTACAACTACTGAAACCCAAAATGTACTTATTTTCCATAACAGTTTTCTCGTCTTTCAACGCCTATCGCACGCTGTTTCAGAGAGCCTGGCTGAATAACGCGCCTTCATTGGCTGAGTAACAACGATGATCTATCAATAATAAATAGATGAAATCTGTGTCCACTTCAAAATTTAAAATTTTAATTTGTCCTACGAATTCGTTGAGGCGCGTTTTCCGACACTCCACCGATTCCGAGGAAGGGGTTGTCACCGAGGAACCGATTCCGAGGAAATCGGGGCGGAGTTTCAATTTTTGCAGTGTCGCNNNNNNNNNNTTTGAGTGAGATGATACCGCTCGCCGCAGCCGAACGA</canonical>
            <polymorphic>TATTCTGAAACAATCTTTATTTTTCAGCAACAATACATATTTATTCATTATTGTGTTCTTCAAGTCCTTCAAGGATCTTCTCCATCACCCACGTCATCTTCATCAGGTGCTCATCACAACGCTGGTTTTGTACAAGATGGAATGATGGTCGAATCGGGATTCTGATTCTCCTTTTCTCCGAATATTTACCTTGTTCTAGTCTATTACTATTCGCCCTCTTCCCACATTCATTTTTCTTCCCATCCCATCCCACTTTTGTTCATTTTCTTCGGTATCAACGGGTTTTGTCTTCGTTATTTCCTTTTCATCTCCATCTCTTCCGTGACTCCACCTCCTTTTCCAATTTTCTGGAGATTATCAATTCTTTCAAAAAACGCGCGCTTCGATCCTACCGACGGGTAACAAACTATTGAAAAAAAACCGTATATTTATTAAATACGTAATTAGCTTTTTTAACTTTTGAACGATTATAATTGCGATTAACTTTGATTAATGATTGYAAAAAAATTAATAAATTGTTTTCAAATTAAAAGTTTGTTTTCTTTTTGTACAGGCAGAGGAATGTATTGAGAATTGGCAATAGTTGGGATTGAATGTCAGAACTTACAAGACAGAACAAACTATTTTTCTGGTACAAAGAAACCATAACTACAACTACTGAAACCCAAAATGTACTTATTTTCCATAACAGTTTTCTCGTCTTTCAACGCCTATCGCACGCTGTTTCAGAGAGCCTGGCTGAATAACGCGCCTTCATTGGCTGAGTAACAACGATGATCTATCAATAATAAATAGATGAAATCTGTGTCCACTTCAAAATTTAAAATTTTAATTTGTCCTACGAATTCGTTGAGGCGCGTTTTCCGACACTCCACCGATTCCGAGGAAGGGGTTGTCACCGAGGAACCGATTCCGAGGAAATCGGGGCGGAGTTTCAATTTTTGCAGTGTCGCNNNNNNNNNNTTTGAGTGAGATGATACCGCTCGCCGCAGCCGAACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGGGTAACAAACTATTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>GGTTTCTTTGTACCAGAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGGGTAACAAACTATTGAAAAAAAACCGTATATTTATTAAATACGTAATTAGCTTTTTTAACTTTTGAACGATTATAATTGCGATTAACTTTGATTAATGATTGAAAAAAAATTAATAAATTGTTTTCAAATTAAAAGTTTGTTTTCTTTTTGTACAGGCAGAGGAATGTATTGAGAATTGGCAATAGTTGGGATTGAATGTCAGAACTTACAAGACAGAACAAACTATTTTTCTGGTACAAAGAAACC</canonical_amplicon>
		<polymorphic_amplicon>ACGGGTAACAAACTATTGAAAAAAAACCGTATATTTATTAAATACGTAATTAGCTTTTTTAACTTTTGAACGATTATAATTGCGATTAACTTTGATTAATGATTGYAAAAAAATTAATAAATTGTTTTCAAATTAAAAGTTTGTTTTCTTTTTGTACAGGCAGAGGAATGTATTGAGAATTGGCAATAGTTGGGATTGAATGTCAGAACTTACAAGACAGAACAAACTATTTTTCTGGTACAAAGAAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28254</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>303328</contig_pos>
        <strand></strand>
        <context>TTTCTAAATA[C/T]TTTCAGCATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAGACCGGCCCGGCCCGTCGCAAATGTGCTAAATATTTTTTCTAAATA</left_flank>
        <right_flank>TTTCAGCATTCGTAATATAAACTTTCCAAAAACTTTCGTATGCATTGAAA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGAAGATTCTAGGAGAACTCAGAAAACATATTCTGATCATGATGAAATTCTAGAACCAGTTAACCTAGGGGAAAAGTGACTAGCCAAAAGATCTATTGAAAGCTAGTGAAATTTAGACAGTGAGGGAGATCCCATGATAGTAGGAAAATAGGCGTACCTGCCAAGTTCGACGTCTACATCCCGCCACGGGCTGCTGTGGTCCGGTTCTGCTCAGGCGACGGCAGACAACGAGGACTACACCACTACGACCACTGCGAGTTGACTTGCGGTCGAACATCAGGCTCCATCCTTCATCGGCATTCAAGCTGAATTGCGTTTTAAGATAAGAATTAGAGACGCGTAGTTTTACCTGTTAGCTACTGTTATCCCGAAAAAATTATCCCGAAAAATTTTTTGAAACGACTGGAAAAAATGTTCTCTGAAAACCCGGGTCGCAAACATTCTGAAAAAAGACCGGCCCGGCCCGTCGCAAATGTGCTAAATATTTTTTCTAAATACTTTCAGCATTCGTAATATAAACTTTCCAAAAACTTTCGTATGCATTGAAAACATAGACACCCCTAATTACCTTATAAGGAGTAGGCGGTGCCAGTCAGAGTGAAAATTCTGTCCTCAAGCGAAAAAATATCAATTTGGCACTTTATAATTGTCGAGATACTAGAAACCTCTATTTGGCCGGAACTCGTGAGCAAAAAGCACGCGCGGCACATTTCTTCTCTCGTTGGAGTCGTCAGGGAAACGGAAAGCCGGCGGCATCGAAAGCCTTATATTCTAATCCAAGCTGTTATCACAAACACTCCGCCTTCTTCTTTCCACCTCTTTTTCTATTATTTTTTTTTCGTCTCCCAACGGACTCAATTATACTCTACCCTTTTTTAGTTCGGTCTGTCTCTTCTGTTATTCTTGGACTCAAATGAGCACTCGTCGAGTTGTTTCAAATTGAAACGAGAAATGACGGATGAGCTCAGGAGACGATGCTATCGAAGCGATTCTGAATG</canonical>
            <polymorphic>TTAGAAGATTCTAGGAGAACTCAGAAAACATATTCTGATCATGATGAAATTCTAGAACCAGTTAACCTAGGGGAAAAGTGACTAGCCAAAAGATCTATTGAAAGCTAGTGAAATTTAGACAGTGAGGGAGATCCCATGATAGTAGGAAAATAGGCGTACCTGCCAAGTTCGACGTCTACATCCCGCCACGGGCTGCTGTGGTCCGGTTCTGCTCAGGCGACGGCAGACAACGAGGACTACACCACTACGACCACTGCGAGTTGACTTGCGGTCGAACATCAGGCTCCATCCTTCATCGGCATTCAAGCTGAATTGCGTTTTAAGATAAGAATTAGAGACGCGTAGTTTTACCTGTTAGCTACTGTTATCCCGAAAAAATTATCCCGAAAAATTTTTTGAAACGACTGGAAAAAATGTTCTCTGAAAACCCGGGTCGCAAACATTCTGAAAAAAGACCGGCCCGGCCCGTCGCAAATGTGCTAAATATTTTTTCTAAATAYTTTCAGCATTCGTAATATAAACTTTCCAAAAACTTTCGTATGCATTGAAAACATAGACACCCCTAATTACCTTATAAGGAGTAGGCGGTGCCAGTCAGAGTGAAAATTCTGTCCTCAAGCGAAAAAATATCAATTTGGCACTTTATAATTGTCGAGATACTAGAAACCTCTATTTGGCCGGAACTCGTGAGCAAAAAGCACGCGCGGCACATTTCTTCTCTCGTTGGAGTCGTCAGGGAAACGGAAAGCCGGCGGCATCGAAAGCCTTATATTCTAATCCAAGCTGTTATCACAAACACTCCGCCTTCTTCTTTCCACCTCTTTTTCTATTATTTTTTTTTCGTCTCCCAACGGACTCAATTATACTCTACCCTTTTTTAGTTCGGTCTGTCTCTTCTGTTATTCTTGGACTCAAATGAGCACTCGTCGAGTTGTTTCAAATTGAAACGAGAAATGACGGATGAGCTCAGGAGACGATGCTATCGAAGCGATTCTGAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAATTAGAGACGCGTAGTTTTA</pcr_primer_p1>
		<pcr_primer_p2>AAGGTAATTAGGGGTGTCTATGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAATTAGAGACGCGTAGTTTTACCTGTTAGCTACTGTTATCCCGAAAAAATTATCCCGAAAAATTTTTTGAAACGACTGGAAAAAATGTTCTCTGAAAACCCGGGTCGCAAACATTCTGAAAAAAGACCGGCCCGGCCCGTCGCAAATGTGCTAAATATTTTTTCTAAATACTTTCAGCATTCGTAATATAAACTTTCCAAAAACTTTCGTATGCATTGAAAACATAGACACCCCTAATTACCTT</canonical_amplicon>
		<polymorphic_amplicon>AGAATTAGAGACGCGTAGTTTTACCTGTTAGCTACTGTTATCCCGAAAAAATTATCCCGAAAAATTTTTTGAAACGACTGGAAAAAATGTTCTCTGAAAACCCGGGTCGCAAACATTCTGAAAAAAGACCGGCCCGGCCCGTCGCAAATGTGCTAAATATTTTTTCTAAATAYTTTCAGCATTCGTAATATAAACTTTCCAAAAACTTTCGTATGCATTGAAAACATAGACACCCCTAATTACCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28255</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>324552</contig_pos>
        <strand></strand>
        <context>atttttaatt[T/G]tcagcacatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TGGGGTTTTGGCTTCGTAATCACCAGTTTTCGTTATAAAAATTTTTAATT</left_flank>
        <right_flank>TCAGCACATTTTCATACTTTTGTGGAAGTATCAATCGTCTGACTTATGTG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATGGAAAGAGAGTCTGACTCAAATGTTTGCATTGTGTGGATCAAAAGTGATGTGGCATAAGCCAAACGAGAGTCACTCCATACTTTCTTCCTCTATTGATTAGGATTCAATTCTTGTCAGATGGTGGTTTCGTAAGAAACAATATTAGTGACGTAAACACTTGTTTATTTAGTGATTTCTTAAATTTCAGTATGTGTCAAATTCCATAATAGGCAAATATTGTGAAGTGAGAATGTTTTATAGTACAGTGCGCGTCATAAGTATAGCGCCCCCCTCAGAAAATGAGTTTCCAGATTTCCTGTAACAGATAGGAAAAATCTGTTTACACTATTCGAACAAGCGTCTAATAGAACCCAGATCTGGAAATTTTCGTTTCAATCGGTTGGGCTTGGTCTGATCTATGACCGAAACATCGAAAATGCACCGCGTCAAAAGTATAGCGCGTTTTGGGGTTTTGGCTTCGTAATCACCAGTTTTCGTTATAAAAATTTTTAATTTTCAGCACATTTTCATACTTTTGTGGAAGTATCAATCGTCTGACTTATGTGGATCATGGATAAATCAGCGTTTCAGTCATCAAAACTTCCACCGCCACCCACATGGCTATAATTGTTGATTCCAGGCTGGAAAACCGCTTAAATAACATTTTTCATCGTGCTTATTATTGTAAAAACACTTTTGACCCATCTATGCAATCTACAGTGTCTGAATCGAAGCCTTGTTCCGAACTTCACCTCGGCAGCCATCACATTCGTCGGCTTCCGACGCCGGGAAAAAATTTTTCTGGGGCATTCAACATTCTGGGAACATTCTGCTAGGTTCCCTCAAGTTTTCCAATTCAATAGAAACTCCGTAATTACTTTTCACGGGTTCTGGATCATCACTTTCACAGAATACCAGAGATACTGTAGGAATTTTGAATAAAAGCAATTCCGAAGTAAAAAAGCTCCAACGACAAAGTCGTTCTAGCTTTTAATGAATTGGAAAACTCAAGGGAA</canonical>
            <polymorphic>CGATGGAAAGAGAGTCTGACTCAAATGTTTGCATTGTGTGGATCAAAAGTGATGTGGCATAAGCCAAACGAGAGTCACTCCATACTTTCTTCCTCTATTGATTAGGATTCAATTCTTGTCAGATGGTGGTTTCGTAAGAAACAATATTAGTGACGTAAACACTTGTTTATTTAGTGATTTCTTAAATTTCAGTATGTGTCAAATTCCATAATAGGCAAATATTGTGAAGTGAGAATGTTTTATAGTACAGTGCGCGTCATAAGTATAGCGCCCCCCTCAGAAAATGAGTTTCCAGATTTCCTGTAACAGATAGGAAAAATCTGTTTACACTATTCGAACAAGCGTCTAATAGAACCCAGATCTGGAAATTTTCGTTTCAATCGGTTGGGCTTGGTCTGATCTATGACCGAAACATCGAAAATGCACCGCGTCAAAAGTATAGCGCGTTTTGGGGTTTTGGCTTCGTAATCACCAGTTTTCGTTATAAAAATTTTTAATTKTCAGCACATTTTCATACTTTTGTGGAAGTATCAATCGTCTGACTTATGTGGATCATGGATAAATCAGCGTTTCAGTCATCAAAACTTCCACCGCCACCCACATGGCTATAATTGTTGATTCCAGGCTGGAAAACCGCTTAAATAACATTTTTCATCGTGCTTATTATTGTAAAAACACTTTTGACCCATCTATGCAATCTACAGTGTCTGAATCGAAGCCTTGTTCCGAACTTCACCTCGGCAGCCATCACATTCGTCGGCTTCCGACGCCGGGAAAAAATTTTTCTGGGGCATTCAACATTCTGGGAACATTCTGCTAGGTTCCCTCAAGTTTTCCAATTCAATAGAAACTCCGTAATTACTTTTCACGGGTTCTGGATCATCACTTTCACAGAATACCAGAGATACTGTAGGAATTTTGAATAAAAGCAATTCCGAAGTAAAAAAGCTCCAACGACAAAGTCGTTCTAGCTTTTAATGAATTGGAAAACTCAAGGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGGCAAATATTGTGAAGTGAG</pcr_primer_p1>
		<pcr_primer_p2>CAGAACCCGTGAAAAGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>667</pcr_amplicon_size>
		<canonical_amplicon>ATAGGCAAATATTGTGAAGTGAGAATGTTTTATAGTACAGTGCGCGTCATAAGTATAGCGCCCCCCTCAGAAAATGAGTTTCCAGATTTCCTGTAACAGATAGGAAAAATCTGTTTACACTATTCGAACAAGCGTCTAATAGAACCCAGATCTGGAAATTTTCGTTTCAATCGGTTGGGCTTGGTCTGATCTATGACCGAAACATCGAAAATGCACCGCGTCAAAAGTATAGCGCGTTTTGGGGTTTTGGCTTCGTAATCACCAGTTTTCGTTATAAAAATTTTTAATTTTCAGCACATTTTCATACTTTTGTGGAAGTATCAATCGTCTGACTTATGTGGATCATGGATAAATCAGCGTTTCAGTCATCAAAACTTCCACCGCCACCCACATGGCTATAATTGTTGATTCCAGGCTGGAAAACCGCTTAAATAACATTTTTCATCGTGCTTATTATTGTAAAAACACTTTTGACCCATCTATGCAATCTACAGTGTCTGAATCGAAGCCTTGTTCCGAACTTCACCTCGGCAGCCATCACATTCGTCGGCTTCCGACGCCGGGAAAAAATTTTTCTGGGGCATTCAACATTCTGGGAACATTCTGCTAGGTTCCCTCAAGTTTTCCAATTCAATAGAAACTCCGTAATTACTTTTCACGGGTTCTG</canonical_amplicon>
		<polymorphic_amplicon>ATAGGCAAATATTGTGAAGTGAGAATGTTTTATAGTACAGTGCGCGTCATAAGTATAGCGCCCCCCTCAGAAAATGAGTTTCCAGATTTCCTGTAACAGATAGGAAAAATCTGTTTACACTATTCGAACAAGCGTCTAATAGAACCCAGATCTGGAAATTTTCGTTTCAATCGGTTGGGCTTGGTCTGATCTATGACCGAAACATCGAAAATGCACCGCGTCAAAAGTATAGCGCGTTTTGGGGTTTTGGCTTCGTAATCACCAGTTTTCGTTATAAAAATTTTTAATTKTCAGCACATTTTCATACTTTTGTGGAAGTATCAATCGTCTGACTTATGTGGATCATGGATAAATCAGCGTTTCAGTCATCAAAACTTCCACCGCCACCCACATGGCTATAATTGTTGATTCCAGGCTGGAAAACCGCTTAAATAACATTTTTCATCGTGCTTATTATTGTAAAAACACTTTTGACCCATCTATGCAATCTACAGTGTCTGAATCGAAGCCTTGTTCCGAACTTCACCTCGGCAGCCATCACATTCGTCGGCTTCCGACGCCGGGAAAAAATTTTTCTGGGGCATTCAACATTCTGGGAACATTCTGCTAGGTTCCCTCAAGTTTTCCAATTCAATAGAAACTCCGTAATTACTTTTCACGGGTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28256</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>371981</contig_pos>
        <strand>+</strand>
        <context>CTGAATTCAC[C/G]ACAGTCGATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGAGTGATTCTCGAAGTTTCTCTATCTGTATCATTCCATCCTGAATTCAC</left_flank>
        <right_flank>ACAGTCGATGATCGAATCTTCAACATGCAATGTTTCCATCAGAAGAAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAATCGATCAAGGGATCGATTCTGGGTGTTTTTTCGCTCTCACAAAATTCCCAGAAGCGATCTCGGGATCGCTTCTGTAGGTTCACGGAAATATATCTCACGTTATTATTTTTGCTGTTGTTTTTTTTTCACTTTTCTTCAATAAATTTTTTCTGTTTTGTTGACCTGAATTTCTTATGAAAAAAACATTATTCACCTTAAAAAAAGTGAGGCATCGTATCCAAGAACTTTCTGTGAAAATCTCTCCGCCAGACAAGAAAAAGTTACGAATTACCTAAAGTTAGTTTTTTCTGTATAAAGTATACATATTTTACTAATTTGCAACGAATTTTGAGACAGAGTTAGAAATTTTCAAATTTTCATCTTCTTATATTATGAAAATACTTAAATTGTTTGGGGAAATAATTTAATTTCTAGCTGTTTTTTATTCAGAAGTCTTCACCCTACCGGAGTGATTCTCGAAGTTTCTCTATCTGTATCATTCCATCCTGAATTCACCACAGTCGATGATCGAATCTTCAACATGCAATGTTTCCATCAGAAGAAATCAAATGGATCCTCAAATTCTCTAGCCATCGGATCCCCTCAACCTCCACCACCAGACACAAAAGGGCCAAGTTGTTCGTATGAAGTTCTCGCCAGTCCAGGAGGGTTGCCAGCCGGACGATTGGCTTTGGGCCAAGAAGTGTATCATTCGTGGCAGTGTCAGAATGTTTATGTAAGTAGTTTCTGAAATTATGTCAATTGAAGTGGACAACGAGGATCCCCCAAATTAAGACGAATGAGCCCTCGCCCCTTGTAGCTTTATTCTTAAAACCTGTAATAGAAGGGCCTCCTAACTTTCAACTTCGAGCCAATTTATCTCGGTTCCTGTCAAAGATATCAAATAGTTTTCACCTAATGAATTGTTTGTCATAGTATCAAAAATCTTTCATAAGTTGGCACGTTTTTGATAGCTTTACGGAAACAGAGATAAATTAGCTCAAACTTGCCAGTGCG</canonical>
            <polymorphic>AGAATCGATCAAGGGATCGATTCTGGGTGTTTTTTCGCTCTCACAAAATTCCCAGAAGCGATCTCGGGATCGCTTCTGTAGGTTCACGGAAATATATCTCACGTTATTATTTTTGCTGTTGTTTTTTTTTCACTTTTCTTCAATAAATTTTTTCTGTTTTGTTGACCTGAATTTCTTATGAAAAAAACATTATTCACCTTAAAAAAAGTGAGGCATCGTATCCAAGAACTTTCTGTGAAAATCTCTCCGCCAGACAAGAAAAAGTTACGAATTACCTAAAGTTAGTTTTTTCTGTATAAAGTATACATATTTTACTAATTTGCAACGAATTTTGAGACAGAGTTAGAAATTTTCAAATTTTCATCTTCTTATATTATGAAAATACTTAAATTGTTTGGGGAAATAATTTAATTTCTAGCTGTTTTTTATTCAGAAGTCTTCACCCTACCGGAGTGATTCTCGAAGTTTCTCTATCTGTATCATTCCATCCTGAATTCACSACAGTCGATGATCGAATCTTCAACATGCAATGTTTCCATCAGAAGAAATCAAATGGATCCTCAAATTCTCTAGCCATCGGATCCCCTCAACCTCCACCACCAGACACAAAAGGGCCAAGTTGTTCGTATGAAGTTCTCGCCAGTCCAGGAGGGTTGCCAGCCGGACGATTGGCTTTGGGCCAAGAAGTGTATCATTCGTGGCAGTGTCAGAATGTTTATGTAAGTAGTTTCTGAAATTATGTCAATTGAAGTGGACAACGAGGATCCCCCAAATTAAGACGAATGAGCCCTCGCCCCTTGTAGCTTTATTCTTAAAACCTGTAATAGAAGGGCCTCCTAACTTTCAACTTCGAGCCAATTTATCTCGGTTCCTGTCAAAGATATCAAATAGTTTTCACCTAATGAATTGTTTGTCATAGTATCAAAAATCTTTCATAAGTTGGCACGTTTTTGATAGCTTTACGGAAACAGAGATAAATTAGCTCAAACTTGCCAGTGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>205 144 95 83 64 53 48 47 43 43 31 29 27 15 14 14 13 11 7 6 3 3 2</canonical_bands>
                <polymorphic_bands>205 144 98 83 64 53 48 47 43 43 31 29 27 15 14 14 13 11 7 6 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGAATTTTGAGACAGAGTTAGA</pcr_primer_p1>
		<pcr_primer_p2>CTAGAGAATTTGAGGATCCATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACGAATTTTGAGACAGAGTTAGAAATTTTCAAATTTTCATCTTCTTATATTATGAAAATACTTAAATTGTTTGGGGAAATAATTTAATTTCTAGCTGTTTTTTATTCAGAAGTCTTCACCCTACCGGAGTGATTCTCGAAGTTTCTCTATCTGTATCATTCCATCCTGAATTCACCACAGTCGATGATCGAATCTTCAACATGCAATGTTTCCATCAGAAGAAATCAAATGGATCCTCAAATTCTCTAG</canonical_amplicon>
		<polymorphic_amplicon>ACGAATTTTGAGACAGAGTTAGAAATTTTCAAATTTTCATCTTCTTATATTATGAAAATACTTAAATTGTTTGGGGAAATAATTTAATTTCTAGCTGTTTTTTATTCAGAAGTCTTCACCCTACCGGAGTGATTCTCGAAGTTTCTCTATCTGTATCATTCCATCCTGAATTCACSACAGTCGATGATCGAATCTTCAACATGCAATGTTTCCATCAGAAGAAATCAAATGGATCCTCAAATTCTCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28257</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>378340</contig_pos>
        <strand>+</strand>
        <context>ACATGAATAC[A/G]ACAACTACTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGCGTTTGGAATTGGTATGAAAGTAAAGTTCAAGCTTCTACATGAATAC</left_flank>
        <right_flank>ACAACTACTTTTTACCTGTCGTTTTCGGTATCATCATAATCAGAAGTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATGTCATCAAAAAATGTGCAAGAGCGAGCTCATTTAACGGAATCCAAATCCACCGCGTCGTTGTGGAGGATCGGGATCACGGTTATTCAAGCCCAGTGCATGAGCAAGCTCTTCTCTTTCCGGTTGCCCAGGCTTCATGCGATTCGTTATTTCGTCCTCTTGGTCGTGATAGTCTGAAATTGTGTTAATTTTTCCCCACAACAAGGAAGAAAAACTTACTCGAGGAGACGTAACGGGGTTTCCTCTCGTTCTGCTTTCTTGAGTTTCCGTTGAACCGGTTGTTGTACTCACTGCCGAACCCTTTCTTCGGTTGCTGTGGTTTCCCCTCCGGACCCTTTGACGACGTTGGGTTGGAAGTGCCGGGTCTTGAAGTGTATTGGTTCTGCTGTTCGCGGTAGTTGTAATTTCGCACCGATTGAATGGTTTGCTGGAGCATTCTGCAAAACTCTGCGTTTGGAATTGGTATGAAAGTAAAGTTCAAGCTTCTACATGAATACGACAACTACTTTTTACCTGTCGTTTTCGGTATCATCATAATCAGAAGTTTTTGCACCGTGTGAACTGTACGGAGTTCTTCTATCGTCTAAGTAGAGTTTTTCCGGATCATACTGATGCCTCGATTGATCATTCCGAGGGAATCCCCGATCAAAATCGTTGGTTGATTGAATTTTACTGTGTTTGTGGACAAAATCCCGATCTCTGGGAACGAAAGTTTGCACGTCATCGACAGGTGGCCATATGTTTCCACGAAACGAGTCTCTTCGGTCACTTCTACTGTTTACACGAGAAGACGACGGTCTATCGTTCTCGAAATTCGGTCTGCGATTATTTCCACGGTTGCTGGTATAGCCTCCTCTCGCGTGCCGATACTCTGAAATACACCACAGTACGAAACACATTACGACACGAATCAGATGCTCTAACTATGCTGTTAAAAAAAATCACTAACCTCCGTTATTTATAAAAAACATTGCATTTTCAGCTGAAACATTTTCGAT</canonical>
            <polymorphic>ACATGTCATCAAAAAATGTGCAAGAGCGAGCTCATTTAACGGAATCCAAATCCACCGCGTCGTTGTGGAGGATCGGGATCACGGTTATTCAAGCCCAGTGCATGAGCAAGCTCTTCTCTTTCCGGTTGCCCAGGCTTCATGCGATTCGTTATTTCGTCCTCTTGGTCGTGATAGTCTGAAATTGTGTTAATTTTTCCCCACAACAAGGAAGAAAAACTTACTCGAGGAGACGTAACGGGGTTTCCTCTCGTTCTGCTTTCTTGAGTTTCCGTTGAACCGGTTGTTGTACTCACTGCCGAACCCTTTCTTCGGTTGCTGTGGTTTCCCCTCCGGACCCTTTGACGACGTTGGGTTGGAAGTGCCGGGTCTTGAAGTGTATTGGTTCTGCTGTTCGCGGTAGTTGTAATTTCGCACCGATTGAATGGTTTGCTGGAGCATTCTGCAAAACTCTGCGTTTGGAATTGGTATGAAAGTAAAGTTCAAGCTTCTACATGAATACRACAACTACTTTTTACCTGTCGTTTTCGGTATCATCATAATCAGAAGTTTTTGCACCGTGTGAACTGTACGGAGTTCTTCTATCGTCTAAGTAGAGTTTTTCCGGATCATACTGATGCCTCGATTGATCATTCCGAGGGAATCCCCGATCAAAATCGTTGGTTGATTGAATTTTACTGTGTTTGTGGACAAAATCCCGATCTCTGGGAACGAAAGTTTGCACGTCATCGACAGGTGGCCATATGTTTCCACGAAACGAGTCTCTTCGGTCACTTCTACTGTTTACACGAGAAGACGACGGTCTATCGTTCTCGAAATTCGGTCTGCGATTATTTCCACGGTTGCTGGTATAGCCTCCTCTCGCGTGCCGATACTCTGAAATACACCACAGTACGAAACACATTACGACACGAATCAGATGCTCTAACTATGCTGTTAAAAAAAATCACTAACCTCCGTTATTTATAAAAAACATTGCATTTTCAGCTGAAACATTTTCGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCTTGAAGTGTATTGGTTCT</pcr_primer_p1>
		<pcr_primer_p2>AGTATGATCCGGAAAAACTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGTCTTGAAGTGTATTGGTTCTGCTGTTCGCGGTAGTTGTAATTTCGCACCGATTGAATGGTTTGCTGGAGCATTCTGCAAAACTCTGCGTTTGGAATTGGTATGAAAGTAAAGTTCAAGCTTCTACATGAATACGACAACTACTTTTTACCTGTCGTTTTCGGTATCATCATAATCAGAAGTTTTTGCACCGTGTGAACTGTACGGAGTTCTTCTATCGTCTAAGTAGAGTTTTTCCGGATCATACT</canonical_amplicon>
		<polymorphic_amplicon>GGTCTTGAAGTGTATTGGTTCTGCTGTTCGCGGTAGTTGTAATTTCGCACCGATTGAATGGTTTGCTGGAGCATTCTGCAAAACTCTGCGTTTGGAATTGGTATGAAAGTAAAGTTCAAGCTTCTACATGAATACRACAACTACTTTTTACCTGTCGTTTTCGGTATCATCATAATCAGAAGTTTTTGCACCGTGTGAACTGTACGGAGTTCTTCTATCGTCTAAGTAGAGTTTTTCCGGATCATACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28258</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>422096</contig_pos>
        <strand>+</strand>
        <context>ACGAATAAAA[A/T]AAAAAGAAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAAAAACTACTGTGTGCTCATCCGGAAAATGTGACACCGACGAATAAAA</left_flank>
        <right_flank>AAAAAGAAGGCAATGTTTAGAAAAAGGAATCGAATAATATGTCCTTTCGG</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTTTGGTAGATGAACGCGTCGCTTGGAGAACGAAAGTCTCTAGGAATTGAATGACAGACAGAAAAAGGAAAAATAAGGAAAATGCGGGATTTGTTATTAATCGGTGCAGTCGAGAGTATAGATATCATCCCGAAGAGGGGACCCTCTTCAGTGTGAAGACACGCTAATTGCATTACGCTTTCTAAAGTGCTAGGCGGGAGTGTTACCTTCCAGCCGACTTCTCCTGATGGGGAGCTCATCTTGGACAAATGGAACGGATGTGTAGAGTACTTTTGCTAATCGGTGAGAGGTTCGAAACGAACATTTGAAATTATTTTAATTGTTTTATTTCCCAAGAACTAGTGGAACAAGAGCAAAAAGGGAGATGCTCAAACATTCAACTTAGTCGAAAATCAGCTTTATGAGAGAGGGAGAAAAAAGACGGATGAGGAATATAACGGATCCAGAAGAAAAACTACTGTGTGCTCATCCGGAAAATGTGACACCGACGAATAAAATAAAAAGAAGGCAATGTTTAGAAAAAGGAATCGAATAATATGTCCTTTCGGGATTGATACGAAGGTGAACTGGATGAATGAATACAAATGTGGCAAAAGAGAAGGAAGACGGAAAGGAGAGAAGCAAAGCAACAAATCTTCTTTTTTCTTACAAACTTTTGAATAATTTATGAAGAAATCTATTTCACAAAGGCGCCAAATACATGGGATTCTCGAGTATTCTTGTATAATCGGTGAAAAACTGAGAAGTATAACTATGTGATGAATAAACTTGACACGAAAAAAGAACGAGGAGCTGAGATAGAGAAGGATTTGCGTGGTAAAGTATCATCATCATGCAGATGAGTGTGGAGGAACGGCGTGAAACGCATCGCCCGGCTGCAGCAATACAGCTCTTCTTCATCCGCGGCACCCGCCAGATGTTCTCGAAAGAAAAAAACGAATATAATATTATATTAAACTTCATAACACGGATACCGTAAAACCTCTAATAGAACGACA</canonical>
            <polymorphic>GGTTTTGGTAGATGAACGCGTCGCTTGGAGAACGAAAGTCTCTAGGAATTGAATGACAGACAGAAAAAGGAAAAATAAGGAAAATGCGGGATTTGTTATTAATCGGTGCAGTCGAGAGTATAGATATCATCCCGAAGAGGGGACCCTCTTCAGTGTGAAGACACGCTAATTGCATTACGCTTTCTAAAGTGCTAGGCGGGAGTGTTACCTTCCAGCCGACTTCTCCTGATGGGGAGCTCATCTTGGACAAATGGAACGGATGTGTAGAGTACTTTTGCTAATCGGTGAGAGGTTCGAAACGAACATTTGAAATTATTTTAATTGTTTTATTTCCCAAGAACTAGTGGAACAAGAGCAAAAAGGGAGATGCTCAAACATTCAACTTAGTCGAAAATCAGCTTTATGAGAGAGGGAGAAAAAAGACGGATGAGGAATATAACGGATCCAGAAGAAAAACTACTGTGTGCTCATCCGGAAAATGTGACACCGACGAATAAAAWAAAAAGAAGGCAATGTTTAGAAAAAGGAATCGAATAATATGTCCTTTCGGGATTGATACGAAGGTGAACTGGATGAATGAATACAAATGTGGCAAAAGAGAAGGAAGACGGAAAGGAGAGAAGCAAAGCAACAAATCTTCTTTTTTCTTACAAACTTTTGAATAATTTATGAAGAAATCTATTTCACAAAGGCGCCAAATACATGGGATTCTCGAGTATTCTTGTATAATCGGTGAAAAACTGAGAAGTATAACTATGTGATGAATAAACTTGACACGAAAAAAGAACGAGGAGCTGAGATAGAGAAGGATTTGCGTGGTAAAGTATCATCATCATGCAGATGAGTGTGGAGGAACGGCGTGAAACGCATCGCCCGGCTGCAGCAATACAGCTCTTCTTCATCCGCGGCACCCGCCAGATGTTCTCGAAAGAAAAAAACGAATATAATATTATATTAAACTTCATAACACGGATACCGTAAAACCTCTAATAGAACGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTAGTGGAACAAGAGCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTTGTATTCATTCATCCAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTAGTGGAACAAGAGCAAAAAGGGAGATGCTCAAACATTCAACTTAGTCGAAAATCAGCTTTATGAGAGAGGGAGAAAAAAGACGGATGAGGAATATAACGGATCCAGAAGAAAAACTACTGTGTGCTCATCCGGAAAATGTGACACCGACGAATAAAATAAAAAGAAGGCAATGTTTAGAAAAAGGAATCGAATAATATGTCCTTTCGGGATTGATACGAAGGTGAACTGGATGAATGAATACAAAT</canonical_amplicon>
		<polymorphic_amplicon>ACTAGTGGAACAAGAGCAAAAAGGGAGATGCTCAAACATTCAACTTAGTCGAAAATCAGCTTTATGAGAGAGGGAGAAAAAAGACGGATGAGGAATATAACGGATCCAGAAGAAAAACTACTGTGTGCTCATCCGGAAAATGTGACACCGACGAATAAAAWAAAAAGAAGGCAATGTTTAGAAAAAGGAATCGAATAATATGTCCTTTCGGGATTGATACGAAGGTGAACTGGATGAATGAATACAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28259</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>516621</contig_pos>
        <strand>+</strand>
        <context>CACTTCATAT[C/T]GCTTCATTAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGATGGACATTGTTGGACAACTGGCAACTTTTGAATAATCACTTCATAT</left_flank>
        <right_flank>GCTTCATTACGTCGATACATTGAGCATCACAAGTTGGTTGACAAGCTGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTGGCTGGCACTGTGATACGCATTGAAGTGGAGCTGGAGTGTTGGTGTAGATGGCAACACACCCTGGATCGCAAGCTGGCTGACAGACAGAAATGCAGACTTTGGTGACTGGCGGAACTGTTGAAACTCCAGATGAGAGATATTGGTAGACGCATTGTGGTTGGCACGCAGGTTGACAAGCTGGGATACACGATTCTTGAGCTGGAGCTCTGGTTGTTCCAGCAGTCACTATCTGGATCTGTAGTTGTCTCTCGACACAATGGGGTTGACATGCTGGCTGACAGGCTGGGATACACGTTTCAGTGGTAGTTGTTACAGCTTGGACACATTGTGGAGTACAAGCTGGCTGGCAAGCTGGGATACAAGATGCAGCTGTTGGTTGTTGTGTTGTTTGAATGGACACTGTCCCTGACTGAATGCATTGGGGAGAACAGGTCGGTTGGCATTGAGATGGACATTGTTGGACAACTGGCAACTTTTGAATAATCACTTCATATCGCTTCATTACGTCGATACATTGAGCATCACAAGTTGGTTGACAAGCTGGAACGCATGAGCTGACTGGAGCTGCTGTCGTAGTCTGAAAATTCGAAATACTGAGGAAAATGTGAAAATTGATTCCTTACCGAAGTTCGCATGAATTCCTTGACATTGATAGAAACTGCTGCTTGAATACAAGTTGGCTCACAAGATTTCAAACACATATTGATGCATGTAGACTTGTTCGGTTGGGTAGTACAACTGTTACTGCATGATTGAGCGCATGCTTGTGGGCATTGGGATGCTTTGGTTTGTTGGTTAACCACAACCTGAAAATCAGAGATTACTGGAAGAATATTTGAAGCTTATACCTTGATTGGTGGGAAATTGGATGAGCTTGAACTGCTTGAAGTTGATGGGGAGCACGCTTTGCTGCAAGTGAACTGACAAGTTTTATCACACAAAATCTGCGGTTGGTGAGAATTTCTGACACAAGAGTCAACGCAAGACTTTTGGCA</canonical>
            <polymorphic>TGCTGGCTGGCACTGTGATACGCATTGAAGTGGAGCTGGAGTGTTGGTGTAGATGGCAACACACCCTGGATCGCAAGCTGGCTGACAGACAGAAATGCAGACTTTGGTGACTGGCGGAACTGTTGAAACTCCAGATGAGAGATATTGGTAGACGCATTGTGGTTGGCACGCAGGTTGACAAGCTGGGATACACGATTCTTGAGCTGGAGCTCTGGTTGTTCCAGCAGTCACTATCTGGATCTGTAGTTGTCTCTCGACACAATGGGGTTGACATGCTGGCTGACAGGCTGGGATACACGTTTCAGTGGTAGTTGTTACAGCTTGGACACATTGTGGAGTACAAGCTGGCTGGCAAGCTGGGATACAAGATGCAGCTGTTGGTTGTTGTGTTGTTTGAATGGACACTGTCCCTGACTGAATGCATTGGGGAGAACAGGTCGGTTGGCATTGAGATGGACATTGTTGGACAACTGGCAACTTTTGAATAATCACTTCATATYGCTTCATTACGTCGATACATTGAGCATCACAAGTTGGTTGACAAGCTGGAACGCATGAGCTGACTGGAGCTGCTGTCGTAGTCTGAAAATTCGAAATACTGAGGAAAATGTGAAAATTGATTCCTTACCGAAGTTCGCATGAATTCCTTGACATTGATAGAAACTGCTGCTTGAATACAAGTTGGCTCACAAGATTTCAAACACATATTGATGCATGTAGACTTGTTCGGTTGGGTAGTACAACTGTTACTGCATGATTGAGCGCATGCTTGTGGGCATTGGGATGCTTTGGTTTGTTGGTTAACCACAACCTGAAAATCAGAGATTACTGGAAGAATATTTGAAGCTTATACCTTGATTGGTGGGAAATTGGATGAGCTTGAACTGCTTGAAGTTGATGGGGAGCACGCTTTGCTGCAAGTGAACTGACAAGTTTTATCACACAAAATCTGCGGTTGGTGAGAATTTCTGACACAAGAGTCAACGCAAGACTTTTGGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTTGTTGTGTTGTTTGA</pcr_primer_p1>
		<pcr_primer_p2>TAAGGAATCAATTTTCACATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGGTTGTTGTGTTGTTTGAATGGACACTGTCCCTGACTGAATGCATTGGGGAGAACAGGTCGGTTGGCATTGAGATGGACATTGTTGGACAACTGGCAACTTTTGAATAATCACTTCATATCGCTTCATTACGTCGATACATTGAGCATCACAAGTTGGTTGACAAGCTGGAACGCATGAGCTGACTGGAGCTGCTGTCGTAGTCTGAAAATTCGAAATACTGAGGAAAATGTGAAAATTGATTCCTTA</canonical_amplicon>
		<polymorphic_amplicon>TTGGTTGTTGTGTTGTTTGAATGGACACTGTCCCTGACTGAATGCATTGGGGAGAACAGGTCGGTTGGCATTGAGATGGACATTGTTGGACAACTGGCAACTTTTGAATAATCACTTCATATYGCTTCATTACGTCGATACATTGAGCATCACAAGTTGGTTGACAAGCTGGAACGCATGAGCTGACTGGAGCTGCTGTCGTAGTCTGAAAATTCGAAATACTGAGGAAAATGTGAAAATTGATTCCTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28260</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>516634</contig_pos>
        <strand>+</strand>
        <context>TTCATTACGT[C/T]GATACATTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGACAACTGGCAACTTTTGAATAATCACTTCATATCGCTTCATTACGT</left_flank>
        <right_flank>GATACATTGAGCATCACAAGTTGGTTGACAAGCTGGAACGCATGAGCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGATACGCATTGAAGTGGAGCTGGAGTGTTGGTGTAGATGGCAACACACCCTGGATCGCAAGCTGGCTGACAGACAGAAATGCAGACTTTGGTGACTGGCGGAACTGTTGAAACTCCAGATGAGAGATATTGGTAGACGCATTGTGGTTGGCACGCAGGTTGACAAGCTGGGATACACGATTCTTGAGCTGGAGCTCTGGTTGTTCCAGCAGTCACTATCTGGATCTGTAGTTGTCTCTCGACACAATGGGGTTGACATGCTGGCTGACAGGCTGGGATACACGTTTCAGTGGTAGTTGTTACAGCTTGGACACATTGTGGAGTACAAGCTGGCTGGCAAGCTGGGATACAAGATGCAGCTGTTGGTTGTTGTGTTGTTTGAATGGACACTGTCCCTGACTGAATGCATTGGGGAGAACAGGTCGGTTGGCATTGAGATGGACATTGTTGGACAACTGGCAACTTTTGAATAATCACTTCATATCGCTTCATTACGTCGATACATTGAGCATCACAAGTTGGTTGACAAGCTGGAACGCATGAGCTGACTGGAGCTGCTGTCGTAGTCTGAAAATTCGAAATACTGAGGAAAATGTGAAAATTGATTCCTTACCGAAGTTCGCATGAATTCCTTGACATTGATAGAAACTGCTGCTTGAATACAAGTTGGCTCACAAGATTTCAAACACATATTGATGCATGTAGACTTGTTCGGTTGGGTAGTACAACTGTTACTGCATGATTGAGCGCATGCTTGTGGGCATTGGGATGCTTTGGTTTGTTGGTTAACCACAACCTGAAAATCAGAGATTACTGGAAGAATATTTGAAGCTTATACCTTGATTGGTGGGAAATTGGATGAGCTTGAACTGCTTGAAGTTGATGGGGAGCACGCTTTGCTGCAAGTGAACTGACAAGTTTTATCACACAAAATCTGCGGTTGGTGAGAATTTCTGACACAAGAGTCAACGCAAGACTTTTGGCACTGTGGTTGGCAT</canonical>
            <polymorphic>TGTGATACGCATTGAAGTGGAGCTGGAGTGTTGGTGTAGATGGCAACACACCCTGGATCGCAAGCTGGCTGACAGACAGAAATGCAGACTTTGGTGACTGGCGGAACTGTTGAAACTCCAGATGAGAGATATTGGTAGACGCATTGTGGTTGGCACGCAGGTTGACAAGCTGGGATACACGATTCTTGAGCTGGAGCTCTGGTTGTTCCAGCAGTCACTATCTGGATCTGTAGTTGTCTCTCGACACAATGGGGTTGACATGCTGGCTGACAGGCTGGGATACACGTTTCAGTGGTAGTTGTTACAGCTTGGACACATTGTGGAGTACAAGCTGGCTGGCAAGCTGGGATACAAGATGCAGCTGTTGGTTGTTGTGTTGTTTGAATGGACACTGTCCCTGACTGAATGCATTGGGGAGAACAGGTCGGTTGGCATTGAGATGGACATTGTTGGACAACTGGCAACTTTTGAATAATCACTTCATATCGCTTCATTACGTYGATACATTGAGCATCACAAGTTGGTTGACAAGCTGGAACGCATGAGCTGACTGGAGCTGCTGTCGTAGTCTGAAAATTCGAAATACTGAGGAAAATGTGAAAATTGATTCCTTACCGAAGTTCGCATGAATTCCTTGACATTGATAGAAACTGCTGCTTGAATACAAGTTGGCTCACAAGATTTCAAACACATATTGATGCATGTAGACTTGTTCGGTTGGGTAGTACAACTGTTACTGCATGATTGAGCGCATGCTTGTGGGCATTGGGATGCTTTGGTTTGTTGGTTAACCACAACCTGAAAATCAGAGATTACTGGAAGAATATTTGAAGCTTATACCTTGATTGGTGGGAAATTGGATGAGCTTGAACTGCTTGAAGTTGATGGGGAGCACGCTTTGCTGCAAGTGAACTGACAAGTTTTATCACACAAAATCTGCGGTTGGTGAGAATTTCTGACACAAGAGTCAACGCAAGACTTTTGGCACTGTGGTTGGCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>421 258 242 79</canonical_bands>
                <polymorphic_bands>421 337 242</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGTTGTTGTGTTGTTTGA</pcr_primer_p1>
		<pcr_primer_p2>TAAGGAATCAATTTTCACATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGGTTGTTGTGTTGTTTGAATGGACACTGTCCCTGACTGAATGCATTGGGGAGAACAGGTCGGTTGGCATTGAGATGGACATTGTTGGACAACTGGCAACTTTTGAATAATCACTTCATATCGCTTCATTACGTCGATACATTGAGCATCACAAGTTGGTTGACAAGCTGGAACGCATGAGCTGACTGGAGCTGCTGTCGTAGTCTGAAAATTCGAAATACTGAGGAAAATGTGAAAATTGATTCCTTA</canonical_amplicon>
		<polymorphic_amplicon>TTGGTTGTTGTGTTGTTTGAATGGACACTGTCCCTGACTGAATGCATTGGGGAGAACAGGTCGGTTGGCATTGAGATGGACATTGTTGGACAACTGGCAACTTTTGAATAATCACTTCATATCGCTTCATTACGTYGATACATTGAGCATCACAAGTTGGTTGACAAGCTGGAACGCATGAGCTGACTGGAGCTGCTGTCGTAGTCTGAAAATTCGAAATACTGAGGAAAATGTGAAAATTGATTCCTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28261</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>521737</contig_pos>
        <strand>+</strand>
        <context>TAGGGTCCAG[C/T]AAAAAAACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGAACGCTTTGGAGAAGAGATTCAGGAAAGAATTTGAATTAGGGTCCAG</left_flank>
        <right_flank>AAAAAAACAACATTTAGGTTAGCCTAGAATTATCAGTCATTTGTTGAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGTATATCTTATTGACCGGTACTGTACCCCAAACTTTCAAATGAGCATCAGTATCTTGAAAATAACTTTTCTCAAATTCATTCATTTCCGAAACCCTATCCAGTTCCCCAAACTCATTTCCATTCGATTCTCTTGTCACTTTGTACCCACATAATAATAACTATAATAACCCTTTTCCGACTCCACTAAAACAATTCGAGAGTGACGTTATTCCCCTAAACAGCTGAAAACACATTCTTTCCGTCAAATGTGGAAAACCAGAAGTGCAACTTCTGATATATTCAGAGAATCGAAACTTTTTAAAAGGCAAGCATGAACATGTGAAAAGCCATGAACAGCGTAAAAAAGAGAGTGCGTTTGCACCAGTCATATAAATCTGTTCTGTCAACTATTTTTTTCTTCCGTTGAACTTGTTCCTATGGGGGGGGGGGAACTATAGTTTCTCCAAGAACGCTTTGGAGAAGAGATTCAGGAAAGAATTTGAATTAGGGTCCAGAAAAAAAACAACATTTAGGTTAGCCTAGAATTATCAGTCATTTGTTGAAATTCGTTCCAGCTCCTGCCTGAATTTATTTTAAGAACGCGACATCACGAAAATGCCTAAAATAAGTGGCGCCTGAAATTTTCGGTCTGGTACGTAAATTCTGAAATTCGTTAAACTTTCATCTTTTGAAAAAGGGAAGTTCTTTTATCCTGTGCAAATATTTAGGTTGAAAAAAGAAAAAGAGGATTTCGGATGTAGTTTATTCTGTCCTTTTCACCCGAAACAATTTATCCGGATTGACCGCCAGTGTTCCTCAATTTGAGCCGTCTATGTGTGTTTTGCTTTTTATCCTAAATATTAAAAGTGTCTGTGTGAAAATCTTTCTAGACTGTTCTTTTGTAATCCGATACCGTAATCTGACACTTTTCGATTTGTTTCTGTTTCAACAAGGTTTGACCATAACCCGGGCGGCACCAGTTTCCGGTTGCTTTTTTGATTTTTCAGCACACGCAT</canonical>
            <polymorphic>TTTTGTATATCTTATTGACCGGTACTGTACCCCAAACTTTCAAATGAGCATCAGTATCTTGAAAATAACTTTTCTCAAATTCATTCATTTCCGAAACCCTATCCAGTTCCCCAAACTCATTTCCATTCGATTCTCTTGTCACTTTGTACCCACATAATAATAACTATAATAACCCTTTTCCGACTCCACTAAAACAATTCGAGAGTGACGTTATTCCCCTAAACAGCTGAAAACACATTCTTTCCGTCAAATGTGGAAAACCAGAAGTGCAACTTCTGATATATTCAGAGAATCGAAACTTTTTAAAAGGCAAGCATGAACATGTGAAAAGCCATGAACAGCGTAAAAAAGAGAGTGCGTTTGCACCAGTCATATAAATCTGTTCTGTCAACTATTTTTTTCTTCCGTTGAACTTGTTCCTATGGGGGGGGGGGAACTATAGTTTCTCCAAGAACGCTTTGGAGAAGAGATTCAGGAAAGAATTTGAATTAGGGTCCAGYAAAAAAACAACATTTAGGTTAGCCTAGAATTATCAGTCATTTGTTGAAATTCGTTCCAGCTCCTGCCTGAATTTATTTTAAGAACGCGACATCACGAAAATGCCTAAAATAAGTGGCGCCTGAAATTTTCGGTCTGGTACGTAAATTCTGAAATTCGTTAAACTTTCATCTTTTGAAAAAGGGAAGTTCTTTTATCCTGTGCAAATATTTAGGTTGAAAAAAGAAAAAGAGGATTTCGGATGTAGTTTATTCTGTCCTTTTCACCCGAAACAATTTATCCGGATTGACCGCCAGTGTTCCTCAATTTGAGCCGTCTATGTGTGTTTTGCTTTTTATCCTAAATATTAAAAGTGTCTGTGTGAAAATCTTTCTAGACTGTTCTTTTGTAATCCGATACCGTAATCTGACACTTTTCGATTTGTTTCTGTTTCAACAAGGTTTGACCATAACCCGGGCGGCACCAGTTTCCGGTTGCTTTTTTGATTTTTCAGCACACGCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>273 186 142 129 97 92 58 23</canonical_bands>
                <polymorphic_bands>273 186 142 129 120 92 58</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCACCAGTCATATAAATCTGTTC</pcr_primer_p1>
		<pcr_primer_p2>TTATTTTAGGCATTTTCGTGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCACCAGTCATATAAATCTGTTCTGTCAACTATTTTTTTCTTCCGTTGAACTTGTTCCTATGGGGGGGGGGGAACTATAGTTTCTCCAAGAACGCTTTGGAGAAGAGATTCAGGAAAGAATTTGAATTAGGGTCCAGAAAAAAAACAACATTTAGGTTAGCCTAGAATTATCAGTCATTTGTTGAAATTCGTTCCAGCTCCTGCCTGAATTTATTTTAAGAACGCGACATCACGAAAATGCCTAAAATAA</canonical_amplicon>
		<polymorphic_amplicon>GCACCAGTCATATAAATCTGTTCTGTCAACTATTTTTTTCTTCCGTTGAACTTGTTCCTATGGGGGGGGGGGAACTATAGTTTCTCCAAGAACGCTTTGGAGAAGAGATTCAGGAAAGAATTTGAATTAGGGTCCAGYAAAAAAACAACATTTAGGTTAGCCTAGAATTATCAGTCATTTGTTGAAATTCGTTCCAGCTCCTGCCTGAATTTATTTTAAGAACGCGACATCACGAAAATGCCTAAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28262</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>590532</contig_pos>
        <strand>+</strand>
        <context>GGAATAAGAC[A/T]TATTTTTCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTTGTTGATTTTTTGTTCTTATGATTTCTCCCTCTGAATGGAATAAGAC</left_flank>
        <right_flank>TATTTTTCATTTTTCATTTATCAATGCTCTTTCTATCGGTCTGAACCCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTCGCCCACACTTTGTATATTTCAGCCACCAAGTTTCCCTAGAGCAATCTAATATGAACATTAATCAGTTTCTAGTAACTAATCATGAGTATAGACATGAATAATGTGGAACCTTTTTTCAATCACTTTTTTTGGTCTCCTTGAAATATGTCTAGTGACTAGTTTCGATTTTTTTCTCGTATCATGCCAAAGAAAAGTAAACCGATCAATTACAACTTCTGATATCAGTGATATCAACAGTGAAAGAACACTTCTACTTTCATCATAAGTTGAGAAAAAGTTTTCCCGCATGCCCTCTGCCCAACACCTTATCAACCATCGATTTTCAGGTTTCCACATCTTCATAGTCAACTGCACCTGGGTATCAACTACTCATATTCAAACGTTTTTTTGTTTCAGTTATTTGTTATCCATTTTTTAAATCGTTGTTGTTGTTCGTTCTCGTTTCTTGTTGATTTTTTGTTCTTATGATTTCTCCCTCTGAATGGAATAAGACTTATTTTTCATTTTTCATTTATCAATGCTCTTTCTATCGGTCTGAACCCCGAATTATATATCTGAAATTGTTTTTCGTTTTATTACTATTTTACTTCTTTTTTTGGTGTTCATTATCTCGCGGTTGTTATTTGCCGTTCGTCGTTATCACATGGTTACTCTTTTTGTTCGAATCTGTTCATTTCCCCTAAGACTTGATTGTCTTGGCAACAATCCACTTCGGCCATCCCCTTGCCTCACACAGCTCCGTGCTCCGCCCCTGCTTCATATCTGTGTCAGTCGTTTTCTCATTCTAGTCGTTCCCACTTTCTGCATCTCCCAATTTCCTTCCACAAGGTATCGTTGAATTATAAACCCAAACCTATAATTTTCGAGCAAACATCGTCAATTTTTCGAGCATGAGCGAAATGGTTTGTGAGGCTATAATTCTTAGTTAAGCTTCACCTGCTCTTAGTTTTTGAAAACTGCCCATTCTGCCAGCTTCCATTTTTCCGTTGACTTA</canonical>
            <polymorphic>TATTTCGCCCACACTTTGTATATTTCAGCCACCAAGTTTCCCTAGAGCAATCTAATATGAACATTAATCAGTTTCTAGTAACTAATCATGAGTATAGACATGAATAATGTGGAACCTTTTTTCAATCACTTTTTTTGGTCTCCTTGAAATATGTCTAGTGACTAGTTTCGATTTTTTTCTCGTATCATGCCAAAGAAAAGTAAACCGATCAATTACAACTTCTGATATCAGTGATATCAACAGTGAAAGAACACTTCTACTTTCATCATAAGTTGAGAAAAAGTTTTCCCGCATGCCCTCTGCCCAACACCTTATCAACCATCGATTTTCAGGTTTCCACATCTTCATAGTCAACTGCACCTGGGTATCAACTACTCATATTCAAACGTTTTTTTGTTTCAGTTATTTGTTATCCATTTTTTAAATCGTTGTTGTTGTTCGTTCTCGTTTCTTGTTGATTTTTTGTTCTTATGATTTCTCCCTCTGAATGGAATAAGACWTATTTTTCATTTTTCATTTATCAATGCTCTTTCTATCGGTCTGAACCCCGAATTATATATCTGAAATTGTTTTTCGTTTTATTACTATTTTACTTCTTTTTTTGGTGTTCATTATCTCGCGGTTGTTATTTGCCGTTCGTCGTTATCACATGGTTACTCTTTTTGTTCGAATCTGTTCATTTCCCCTAAGACTTGATTGTCTTGGCAACAATCCACTTCGGCCATCCCCTTGCCTCACACAGCTCCGTGCTCCGCCCCTGCTTCATATCTGTGTCAGTCGTTTTCTCATTCTAGTCGTTCCCACTTTCTGCATCTCCCAATTTCCTTCCACAAGGTATCGTTGAATTATAAACCCAAACCTATAATTTTCGAGCAAACATCGTCAATTTTTCGAGCATGAGCGAAATGGTTTGTGAGGCTATAATTCTTAGTTAAGCTTCACCTGCTCTTAGTTTTTGAAAACTGCCCATTCTGCCAGCTTCCATTTTTCCGTTGACTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTCCACATCTTCATAGTCAAC</pcr_primer_p1>
		<pcr_primer_p2>ATAAAACGAAAAACAATTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTCCACATCTTCATAGTCAACTGCACCTGGGTATCAACTACTCATATTCAAACGTTTTTTTGTTTCAGTTATTTGTTATCCATTTTTTAAATCGTTGTTGTTGTTCGTTCTCGTTTCTTGTTGATTTTTTGTTCTTATGATTTCTCCCTCTGAATGGAATAAGACTTATTTTTCATTTTTCATTTATCAATGCTCTTTCTATCGGTCTGAACCCCGAATTATATATCTGAAATTGTTTTTCGTTTTAT</canonical_amplicon>
		<polymorphic_amplicon>GTTTCCACATCTTCATAGTCAACTGCACCTGGGTATCAACTACTCATATTCAAACGTTTTTTTGTTTCAGTTATTTGTTATCCATTTTTTAAATCGTTGTTGTTGTTCGTTCTCGTTTCTTGTTGATTTTTTGTTCTTATGATTTCTCCCTCTGAATGGAATAAGACWTATTTTTCATTTTTCATTTATCAATGCTCTTTCTATCGGTCTGAACCCCGAATTATATATCTGAAATTGTTTTTCGTTTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28263</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>595093</contig_pos>
        <strand></strand>
        <context>gatttttgat[T/A]gcatgcatag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATTGTTTATCATAATATCACCAACATTTTTCAGTTGACCGATTTTTGAT</left_flank>
        <right_flank>GCATGCATAGGAATTGAGATAATAGAGCTCAAACTAGACTGTGTGAGACC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGAATCTCGGCAGTAACAGTTGATAGTATCCACTCCAAGAACCTGGAAATACAAAAGATATGAAACAGATTATTTCAATGGAGCTCTCCGCTCACCTCTTCTTCTTTGCAGTAAGTTCTCATTTTGAGATGTGGCTCATAAACACTGCTGGATATCCTGAAACTCGAATTTATACATCTCATTTAGCTGTTTTCTGAAACTCACGTTAGATTCTCGCAACCTTTGCTCACATAGTGATTATTCACAAGCGACTTGACACAAATATCACCGTAACAGAGTCCTGTTGAACAGTCGTGCGGTTGATTGCATTGATGGCAACGCAGTTTCATTACTGGAAACAATACAATAAGATACCGTAAACCTTGTATTAGAAGGGCCCCTCACTTTTAACTTTGAGCCAATTTTTCTCGGTTCCTGTCAGAGATATAGAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCACCAACATTTTTCAGTTGACCGATTTTTGATTGCATGCATAGGAATTGAGATAATAGAGCTCAAACTAGACTGTGTGAGACCCTTCTAATACAGGTTTTAGGGTAGATGAGTTAGAATTCATGAATATTACCATTTTCAATATGATATCCGACAGCTTGCCGGCTGCGACTGGATTCGTAGTTTTTGTAGGCGTCACCAAGAGAGATGAGGAATAGAAGAAATAGGGAAAAGAGATGGCTCGTCGACTGCCTCATCACATTTCAGTCTCTCACCTGGAATAAATTATTAGGTGTGAAGTGGGGATTGAAAGATTAAGGAGAGGAAAAGGAAAGGATGAGGATTTTTATTTCAAATTAGCTTAATAAATTGTATGAAATTGTATAATGAAAACACCCTACAAAACTTTGAGCTTATCTTTCTCGCTTCCTGTTGAAGACGTCGAGAAGTGATAAACTAACAAAATGTTTAGCATAATTTCGCATATATTTTGTCTTCTGACTACTTTTTGATATCTTAGATGTGAGATAAATT</canonical>
            <polymorphic>TCAGAATCTCGGCAGTAACAGTTGATAGTATCCACTCCAAGAACCTGGAAATACAAAAGATATGAAACAGATTATTTCAATGGAGCTCTCCGCTCACCTCTTCTTCTTTGCAGTAAGTTCTCATTTTGAGATGTGGCTCATAAACACTGCTGGATATCCTGAAACTCGAATTTATACATCTCATTTAGCTGTTTTCTGAAACTCACGTTAGATTCTCGCAACCTTTGCTCACATAGTGATTATTCACAAGCGACTTGACACAAATATCACCGTAACAGAGTCCTGTTGAACAGTCGTGCGGTTGATTGCATTGATGGCAACGCAGTTTCATTACTGGAAACAATACAATAAGATACCGTAAACCTTGTATTAGAAGGGCCCCTCACTTTTAACTTTGAGCCAATTTTTCTCGGTTCCTGTCAGAGATATAGAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCACCAACATTTTTCAGTTGACCGATTTTTGATWGCATGCATAGGAATTGAGATAATAGAGCTCAAACTAGACTGTGTGAGACCCTTCTAATACAGGTTTTAGGGTAGATGAGTTAGAATTCATGAATATTACCATTTTCAATATGATATCCGACAGCTTGCCGGCTGCGACTGGATTCGTAGTTTTTGTAGGCGTCACCAAGAGAGATGAGGAATAGAAGAAATAGGGAAAAGAGATGGCTCGTCGACTGCCTCATCACATTTCAGTCTCTCACCTGGAATAAATTATTAGGTGTGAAGTGGGGATTGAAAGATTAAGGAGAGGAAAAGGAAAGGATGAGGATTTTTATTTCAAATTAGCTTAATAAATTGTATGAAATTGTATAATGAAAACACCCTACAAAACTTTGAGCTTATCTTTCTCGCTTCCTGTTGAAGACGTCGAGAAGTGATAAACTAACAAAATGTTTAGCATAATTTCGCATATATTTTGTCTTCTGACTACTTTTTGATATCTTAGATGTGAGATAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>495 198 193 110 4</canonical_bands>
                <polymorphic_bands>495 198 197 110</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTTCATTACTGGAAACAATACA</pcr_primer_p1>
		<pcr_primer_p2>CTGTCGGATATCATATTGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>AGTTTCATTACTGGAAACAATACAATAAGATACCGTAAACCTTGTATTAGAAGGGCCCCTCACTTTTAACTTTGAGCCAATTTTTCTCGGTTCCTGTCAGAGATATAGAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCACCAACATTTTTCAGTTGACCGATTTTTGATTGCATGCATAGGAATTGAGATAATAGAGCTCAAACTAGACTGTGTGAGACCCTTCTAATACAGGTTTTAGGGTAGATGAGTTAGAATTCATGAATATTACCATTTTCAATATGATATCCGACAG</canonical_amplicon>
		<polymorphic_amplicon>AGTTTCATTACTGGAAACAATACAATAAGATACCGTAAACCTTGTATTAGAAGGGCCCCTCACTTTTAACTTTGAGCCAATTTTTCTCGGTTCCTGTCAGAGATATAGAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCACCAACATTTTTCAGTTGACCGATTTTTGATWGCATGCATAGGAATTGAGATAATAGAGCTCAAACTAGACTGTGTGAGACCCTTCTAATACAGGTTTTAGGGTAGATGAGTTAGAATTCATGAATATTACCATTTTCAATATGATATCCGACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28264</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>612633</contig_pos>
        <strand>+</strand>
        <context>GATCAAAAGA[G/T]CGGTATCATC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTGCCTTCTCACTCGAAGAGAGAAAAGTTGCAAACAAATGATCAAAAGA</left_flank>
        <right_flank>CGGTATCATCGAACAACAACAAATGAGGTTTCTGATACCAGTGTGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGCTCGAAAACTTCAGAAAAGTTTAGTGTTTCAGTTCCATATTGCCCTATCGCGCCATCTGGAATATTCGTGAAATGCCAATTCCAAGTCCTCCCTTGCTAACTGATCGAAAATTGTTTATCCCCTAGGTTTTCTTTTTTCCAAACTTTTATTATCAGTAACTTTTGTTCTAAAACACAACAGTGATTCAAACAATTGCAATGTCCCTAATGCGGGAGACGACCTCAACCCCTGTCATCTTTCCCCCAGTTCTCTTTGAATTGTCATTGAGAACATTCACTAGCAGCAAACCCAAAAACCACGCCATAAACTGGCAGACTTCAAAGAAAAAGCGTCTCATTCCGATTCCATCACTTTTCAGGTAGACTTCAGGTGTCACGTGTGTGTGCAGATAGGGGTCGCTCTGTGTCTCCGGTGCACACAAATGTTTAGAGGAGAAAGTTGAGCTTCTGCCTTCTCACTCGAAGAGAGAAAAGTTGCAAACAAATGATCAAAAGAGCGGTATCATCGAACAACAACAAATGAGGTTTCTGATACCAGTGTGAAAAACATCGGTCAACGATCATCCCTTTCCTCAATATCCTACTCTCTTCTTATCACACCATCATCTTCTCTCTTCGCGATGTCTGTTCACTCCACCTCCGTTATGTCGAGGACAGGAAACCCCCTTTGGCGACGACGAAACCATCCCCACGTGGGGTGATATCACGAGGTTTTATACAGAAAACGATAGAGTCTGTCTCACAAGAATATCCTCTCTAGAACATTTACAGGTACGTGCAAACCCTACAAGGCTACAAACAACACATCCATGTGACATTCGAGATGGGTGTGAGTTGAGTTTTATGGCCCTCCTCCCGATTTGGTTTTCCGACCTTTTTTGAGGAATAAGAAGAAAAACACTAAATCGGCAACAGGAAGACGTTTGGTGGTTTTGAAAATAAACTGATGCAACATGATTCTGAATGAACATCACAACATCAGAGAACAGTCGGACGA</canonical>
            <polymorphic>GTGCTCGAAAACTTCAGAAAAGTTTAGTGTTTCAGTTCCATATTGCCCTATCGCGCCATCTGGAATATTCGTGAAATGCCAATTCCAAGTCCTCCCTTGCTAACTGATCGAAAATTGTTTATCCCCTAGGTTTTCTTTTTTCCAAACTTTTATTATCAGTAACTTTTGTTCTAAAACACAACAGTGATTCAAACAATTGCAATGTCCCTAATGCGGGAGACGACCTCAACCCCTGTCATCTTTCCCCCAGTTCTCTTTGAATTGTCATTGAGAACATTCACTAGCAGCAAACCCAAAAACCACGCCATAAACTGGCAGACTTCAAAGAAAAAGCGTCTCATTCCGATTCCATCACTTTTCAGGTAGACTTCAGGTGTCACGTGTGTGTGCAGATAGGGGTCGCTCTGTGTCTCCGGTGCACACAAATGTTTAGAGGAGAAAGTTGAGCTTCTGCCTTCTCACTCGAAGAGAGAAAAGTTGCAAACAAATGATCAAAAGAKCGGTATCATCGAACAACAACAAATGAGGTTTCTGATACCAGTGTGAAAAACATCGGTCAACGATCATCCCTTTCCTCAATATCCTACTCTCTTCTTATCACACCATCATCTTCTCTCTTCGCGATGTCTGTTCACTCCACCTCCGTTATGTCGAGGACAGGAAACCCCCTTTGGCGACGACGAAACCATCCCCACGTGGGGTGATATCACGAGGTTTTATACAGAAAACGATAGAGTCTGTCTCACAAGAATATCCTCTCTAGAACATTTACAGGTACGTGCAAACCCTACAAGGCTACAAACAACACATCCATGTGACATTCGAGATGGGTGTGAGTTGAGTTTTATGGCCCTCCTCCCGATTTGGTTTTCCGACCTTTTTTGAGGAATAAGAAGAAAAACACTAAATCGGCAACAGGAAGACGTTTGGTGGTTTTGAAAATAAACTGATGCAACATGATTCTGAATGAACATCACAACATCAGAGAACAGTCGGACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAGGTAGACTTCAGGTGT</pcr_primer_p1>
		<pcr_primer_p2>TGGTGTGATAAGAAGAGAGTAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAGGTAGACTTCAGGTGTCACGTGTGTGTGCAGATAGGGGTCGCTCTGTGTCTCCGGTGCACACAAATGTTTAGAGGAGAAAGTTGAGCTTCTGCCTTCTCACTCGAAGAGAGAAAAGTTGCAAACAAATGATCAAAAGAGCGGTATCATCGAACAACAACAAATGAGGTTTCTGATACCAGTGTGAAAAACATCGGTCAACGATCATCCCTTTCCTCAATATCCTACTCTCTTCTTATCACACCA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAGGTAGACTTCAGGTGTCACGTGTGTGTGCAGATAGGGGTCGCTCTGTGTCTCCGGTGCACACAAATGTTTAGAGGAGAAAGTTGAGCTTCTGCCTTCTCACTCGAAGAGAGAAAAGTTGCAAACAAATGATCAAAAGAKCGGTATCATCGAACAACAACAAATGAGGTTTCTGATACCAGTGTGAAAAACATCGGTCAACGATCATCCCTTTCCTCAATATCCTACTCTCTTCTTATCACACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28265</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>613784</contig_pos>
        <strand>+</strand>
        <context>AAACGAAACA[A/G]TTTTCTAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATATAAAAATCCGGTTATTTTGAAGAGACAGTCGGCAAGAAACGAAACA</left_flank>
        <right_flank>TTTTCTAAATCATACGGTACTTCGTTGAAGAGTTTTGTACATCATTACGC</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTAACTGGTTCACCACCATGTACGGCCATCTTTCTTTGATATTTCTTTGTTTCCGATCAAATGATGCGACCGATTGTTCCAGTCACTTCTGCGTCACAGAAAATCTGCTCGTCAAACTTTGGACCGGCTGGCCCACCAGGAAGCAGGAAAACAATACACACGAACGTTCACTTTGACCTGAACTCGGATATTTTTGTTCTTTTAGGGGGTTTTCAAATTCTTTTGACAGCTCGTAAAATCTATAAATATTCAATAGTTTTCCTTCAAATGGTTGAAAAAAACTGGTGAGCGGATTACTGTAACTGTTTTAAAATTTGCATCGAAAAATACAACAAACTGCGCGTTAGTTTTATTTCAGATTCAAGCGGTATTATATTGAGGTGTTTTGTTATGTTTTTCGAGCTATATATTTATTTTTCAAACTGTTGCACATATTTCCCTATATTTGGATATAAAAATCCGGTTATTTTGAAGAGACAGTCGGCAAGAAACGAAACAGTTTTCTAAATCATACGGTACTTCGTTGAAGAGTTTTGTACATCATTACGCAAAAATGCACAACTTTTTTTCCTGCTCACACAAAATAAATGCTTCGATTTCTATTCTTGCTAATTGCTTCTTGCTAATTTTTTGTGTAGTGTCGCAGCTTTCGGATGTTTTTGAGTGTTTTTCTAAATTTTCATTGCCTTTTTTTCAATTTTTTTCATTGATTTGCGTCTTATCCCGTCATTCAGCTCGTAAACAGCTCTTCAATTAAATTTCTCTAACCCGATTATTCCATGTAACCAGATTTCGCCCCCAGAGCCATTTCGTCTGTTTAAATGTTTGTTCGAAAAAGCTTATTTTTTGCGGTCCATTAGTTAAACGAAAACCCAACATTATTTGCTTTTTCAGGCTGTTCTTAACTATGAACTCTTCCTAACCTTGCTTTTTCGATCTTCCTAGCCTTACTTTCTCTATTGAAAAGACGCCAATCGGACCACTTGCGTCAATAGCTCT</canonical>
            <polymorphic>TGTAACTGGTTCACCACCATGTACGGCCATCTTTCTTTGATATTTCTTTGTTTCCGATCAAATGATGCGACCGATTGTTCCAGTCACTTCTGCGTCACAGAAAATCTGCTCGTCAAACTTTGGACCGGCTGGCCCACCAGGAAGCAGGAAAACAATACACACGAACGTTCACTTTGACCTGAACTCGGATATTTTTGTTCTTTTAGGGGGTTTTCAAATTCTTTTGACAGCTCGTAAAATCTATAAATATTCAATAGTTTTCCTTCAAATGGTTGAAAAAAACTGGTGAGCGGATTACTGTAACTGTTTTAAAATTTGCATCGAAAAATACAACAAACTGCGCGTTAGTTTTATTTCAGATTCAAGCGGTATTATATTGAGGTGTTTTGTTATGTTTTTCGAGCTATATATTTATTTTTCAAACTGTTGCACATATTTCCCTATATTTGGATATAAAAATCCGGTTATTTTGAAGAGACAGTCGGCAAGAAACGAAACARTTTTCTAAATCATACGGTACTTCGTTGAAGAGTTTTGTACATCATTACGCAAAAATGCACAACTTTTTTTCCTGCTCACACAAAATAAATGCTTCGATTTCTATTCTTGCTAATTGCTTCTTGCTAATTTTTTGTGTAGTGTCGCAGCTTTCGGATGTTTTTGAGTGTTTTTCTAAATTTTCATTGCCTTTTTTTCAATTTTTTTCATTGATTTGCGTCTTATCCCGTCATTCAGCTCGTAAACAGCTCTTCAATTAAATTTCTCTAACCCGATTATTCCATGTAACCAGATTTCGCCCCCAGAGCCATTTCGTCTGTTTAAATGTTTGTTCGAAAAAGCTTATTTTTTGCGGTCCATTAGTTAAACGAAAACCCAACATTATTTGCTTTTTCAGGCTGTTCTTAACTATGAACTCTTCCTAACCTTGCTTTTTCGATCTTCCTAGCCTTACTTTCTCTATTGAAAAGACGCCAATCGGACCACTTGCGTCAATAGCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>484 299 120 55 19 17 6</canonical_bands>
                <polymorphic_bands>484 299 120 55 36 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAGGTGTTTTGTTATGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAGCAATTAGCAAGAATAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTGAGGTGTTTTGTTATGTTTTTCGAGCTATATATTTATTTTTCAAACTGTTGCACATATTTCCCTATATTTGGATATAAAAATCCGGTTATTTTGAAGAGACAGTCGGCAAGAAACGAAACAGTTTTCTAAATCATACGGTACTTCGTTGAAGAGTTTTGTACATCATTACGCAAAAATGCACAACTTTTTTTCCTGCTCACACAAAATAAATGCTTCGATTTCTATTCTTGCTAATTGCTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>TTGAGGTGTTTTGTTATGTTTTTCGAGCTATATATTTATTTTTCAAACTGTTGCACATATTTCCCTATATTTGGATATAAAAATCCGGTTATTTTGAAGAGACAGTCGGCAAGAAACGAAACARTTTTCTAAATCATACGGTACTTCGTTGAAGAGTTTTGTACATCATTACGCAAAAATGCACAACTTTTTTTCCTGCTCACACAAAATAAATGCTTCGATTTCTATTCTTGCTAATTGCTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28266</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>614531</contig_pos>
        <strand>+</strand>
        <context>TCTTCTAATT[C/T]TTTATTCTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTACATTTAAGCCACTGCAGTGTTGAACAAGTTTTTCTTGTCTTCTAATT</left_flank>
        <right_flank>TTTATTCTGTCTGAAAGACCACAGAGACCATACACAGTTGCCTATTGTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCAATTAAATTTCTCTAACCCGATTATTCCATGTAACCAGATTTCGCCCCCAGAGCCATTTCGTCTGTTTAAATGTTTGTTCGAAAAAGCTTATTTTTTGCGGTCCATTAGTTAAACGAAAACCCAACATTATTTGCTTTTTCAGGCTGTTCTTAACTATGAACTCTTCCTAACCTTGCTTTTTCGATCTTCCTAGCCTTACTTTCTCTATTGAAAAGACGCCAATCGGACCACTTGCGTCAATAGCTCTGCTCTGCGCTCCAGTTGTGCCGTGGCGCGCAGAGCTCGTGACTTCATGGGCCCTTTCTTTCGCATTTCCGCTCATCGATTCACATCCTTTTCCCTTTTCTTCTCGTGAAAAAAAACCTTCTATTACAATTTCCAATTGAAACATTCCTTAATTTGCTTGTTCTCACAACATTCTCATGTTCGTAATTGTAATTACATTACATTTAAGCCACTGCAGTGTTGAACAAGTTTTTCTTGTCTTCTAATTCTTTATTCTGTCTGAAAGACCACAGAGACCATACACAGTTGCCTATTGTTCAGTGGAAGAAAACAATGTTCCCATTTGTCACAGCTCTAGCCGTTCTTTGCAGTCACGTGGAGGAACTGTATTTGATAGTTTGTATCTTTTATTCCAGATTCAACTGATAAGACGATTGGCGCATCACCCCCTCCCCTTCCTCGCGCCTCCTACGAAATAGAGGCGTAGCCTGAAAAGAAAACGAAAAATGACTCCCACTCCCCATTCACCTATAAAAACCGCCCTCTCGCCACACCAGACACTCAGACCATTTTTTGGGAATACCAGTTGCTCCGCCCAGGGATGTCCCATGTATAACCTGCCCTCTTGTCTCTCTAACTTTTTCTCTTCGGGGCGCCTCCCCCTCTCCACCAGACACCGCATCATCTATCCTCTGCCTGCTGTGCCTCCTTCAAATATATATTCATGCGATTGAGGGAAGGTCGAAATTAATCGATATGATGCTTGATT</canonical>
            <polymorphic>TCTTCAATTAAATTTCTCTAACCCGATTATTCCATGTAACCAGATTTCGCCCCCAGAGCCATTTCGTCTGTTTAAATGTTTGTTCGAAAAAGCTTATTTTTTGCGGTCCATTAGTTAAACGAAAACCCAACATTATTTGCTTTTTCAGGCTGTTCTTAACTATGAACTCTTCCTAACCTTGCTTTTTCGATCTTCCTAGCCTTACTTTCTCTATTGAAAAGACGCCAATCGGACCACTTGCGTCAATAGCTCTGCTCTGCGCTCCAGTTGTGCCGTGGCGCGCAGAGCTCGTGACTTCATGGGCCCTTTCTTTCGCATTTCCGCTCATCGATTCACATCCTTTTCCCTTTTCTTCTCGTGAAAAAAAACCTTCTATTACAATTTCCAATTGAAACATTCCTTAATTTGCTTGTTCTCACAACATTCTCATGTTCGTAATTGTAATTACATTACATTTAAGCCACTGCAGTGTTGAACAAGTTTTTCTTGTCTTCTAATTYTTTATTCTGTCTGAAAGACCACAGAGACCATACACAGTTGCCTATTGTTCAGTGGAAGAAAACAATGTTCCCATTTGTCACAGCTCTAGCCGTTCTTTGCAGTCACGTGGAGGAACTGTATTTGATAGTTTGTATCTTTTATTCCAGATTCAACTGATAAGACGATTGGCGCATCACCCCCTCCCCTTCCTCGCGCCTCCTACGAAATAGAGGCGTAGCCTGAAAAGAAAACGAAAAATGACTCCCACTCCCCATTCACCTATAAAAACCGCCCTCTCGCCACACCAGACACTCAGACCATTTTTTGGGAATACCAGTTGCTCCGCCCAGGGATGTCCCATGTATAACCTGCCCTCTTGTCTCTCTAACTTTTTCTCTTCGGGGCGCCTCCCCCTCTCCACCAGACACCGCATCATCTATCCTCTGCCTGCTGTGCCTCCTTCAAATATATATTCATGCGATTGAGGGAAGGTCGAAATTAATCGATATGATGCTTGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACATTCTCATGTTCGTAATTGT</pcr_primer_p1>
		<pcr_primer_p2>CAATCGTCTTATCAGTTGAATCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACATTCTCATGTTCGTAATTGTAATTACATTACATTTAAGCCACTGCAGTGTTGAACAAGTTTTTCTTGTCTTCTAATTCTTTATTCTGTCTGAAAGACCACAGAGACCATACACAGTTGCCTATTGTTCAGTGGAAGAAAACAATGTTCCCATTTGTCACAGCTCTAGCCGTTCTTTGCAGTCACGTGGAGGAACTGTATTTGATAGTTTGTATCTTTTATTCCAGATTCAACTGATAAGACGATTG</canonical_amplicon>
		<polymorphic_amplicon>AACATTCTCATGTTCGTAATTGTAATTACATTACATTTAAGCCACTGCAGTGTTGAACAAGTTTTTCTTGTCTTCTAATTYTTTATTCTGTCTGAAAGACCACAGAGACCATACACAGTTGCCTATTGTTCAGTGGAAGAAAACAATGTTCCCATTTGTCACAGCTCTAGCCGTTCTTTGCAGTCACGTGGAGGAACTGTATTTGATAGTTTGTATCTTTTATTCCAGATTCAACTGATAAGACGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28267</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>623721</contig_pos>
        <strand>+</strand>
        <context>TTACGACAGC[A/T]TTTTTTTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCACGACACTCGAGAAGAGCAATTTTGAACGTCGAATTTTTACGACAGC</left_flank>
        <right_flank>TTTTTTTCCATCACCTGATCTTATTACAAAACACATTTTGAGCAAGAGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTTTTTATTAGTTTACAAAATTTTGATATCTTTCACAAGAACCGAGATAATTGAGCTCAAACGTGAAAGTAGGGGCCCTCTCAAACACTATAATTGAGTGCCACCCAACCCGTCAGCTTTGAGCTTCTATAACTCATTTGCTGTGCAAGATATCAACAAGTGGTTTACTAGCAAAACATTTTTACATTATGATTAACATTTTATCAGTTGACAGGTTTCCGATATCTTTGACAGTAACTGAGATATAGTGGCTCAAAATTGACTGGTTGAGTGTCACTCTATTAGAGTGTTTCTCATTGTTTTCAATGGTCCCCTATACGTTAACTGTTTTATTTTCGAAGCTAATTTGTTTATCTTCCTTCTTATTTGTTTTATAAGGAACAATTTTAGTTTTTGCAATCGAAAATCCTGATTTCCTTCCAACCGAAAGTATGAAAAGGTTCAAAAATCACGACACTCGAGAAGAGCAATTTTGAACGTCGAATTTTTACGACAGCTTTTTTTTCCATCACCTGATCTTATTACAAAACACATTTTGAGCAAGAGTCAGAACTTTCATGACTTTGAAAATTTCTGAACTTTGCCACCTTCAAGATCCCCAGTCAACTTTCAAGACTTTCAAATTCTGTGAATTCGAAATTGATCTCTCAAAAGTTACTTTGCTTCTTGATTCTTGATATTCTGGGGATTGTACCCTCAAAACTAGTGAAAGTTTGATTTCCAATTAGTTCCAGACCTATATGAATACTAACCAAGGTTTAATCTACCCTTAAAACCTCAGAAAATCTAATAGAACGCCATTTGAACCGTCAACTTTAAGCCTTTTTATCACGCTTCCTGTAGAAGATATCAAAAAGTGGTAAATTGATAAATACTTATTATAATATCAAAAACATTCTGTCAGTTGACTATTTTTTTAATATATCTTACAGGAACCGAGATAAATTGGCTCAAAGTTAAAAACGGGTGGCCTTCTATTAGAATGTTTACGGTAATCT</canonical>
            <polymorphic>AACTTTTTATTAGTTTACAAAATTTTGATATCTTTCACAAGAACCGAGATAATTGAGCTCAAACGTGAAAGTAGGGGCCCTCTCAAACACTATAATTGAGTGCCACCCAACCCGTCAGCTTTGAGCTTCTATAACTCATTTGCTGTGCAAGATATCAACAAGTGGTTTACTAGCAAAACATTTTTACATTATGATTAACATTTTATCAGTTGACAGGTTTCCGATATCTTTGACAGTAACTGAGATATAGTGGCTCAAAATTGACTGGTTGAGTGTCACTCTATTAGAGTGTTTCTCATTGTTTTCAATGGTCCCCTATACGTTAACTGTTTTATTTTCGAAGCTAATTTGTTTATCTTCCTTCTTATTTGTTTTATAAGGAACAATTTTAGTTTTTGCAATCGAAAATCCTGATTTCCTTCCAACCGAAAGTATGAAAAGGTTCAAAAATCACGACACTCGAGAAGAGCAATTTTGAACGTCGAATTTTTACGACAGCWTTTTTTTCCATCACCTGATCTTATTACAAAACACATTTTGAGCAAGAGTCAGAACTTTCATGACTTTGAAAATTTCTGAACTTTGCCACCTTCAAGATCCCCAGTCAACTTTCAAGACTTTCAAATTCTGTGAATTCGAAATTGATCTCTCAAAAGTTACTTTGCTTCTTGATTCTTGATATTCTGGGGATTGTACCCTCAAAACTAGTGAAAGTTTGATTTCCAATTAGTTCCAGACCTATATGAATACTAACCAAGGTTTAATCTACCCTTAAAACCTCAGAAAATCTAATAGAACGCCATTTGAACCGTCAACTTTAAGCCTTTTTATCACGCTTCCTGTAGAAGATATCAAAAAGTGGTAAATTGATAAATACTTATTATAATATCAAAAACATTCTGTCAGTTGACTATTTTTTTAATATATCTTACAGGAACCGAGATAAATTGGCTCAAAGTTAAAAACGGGTGGCCTTCTATTAGAATGTTTACGGTAATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>502 218 155 61 57 7</canonical_bands>
                <polymorphic_bands>657 218 61 57 7</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>324 155 129 128 90 57 41 28 21 20 7</canonical_bands>
                <polymorphic_bands>479 129 128 90 57 41 28 21 20 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTATGAAAAGGTTCAAAAATCA</pcr_primer_p1>
		<pcr_primer_p2>ATCAAGAATCAAGAAGCAAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTATGAAAAGGTTCAAAAATCACGACACTCGAGAAGAGCAATTTTGAACGTCGAATTTTTACGACAGCTTTTTTTTCCATCACCTGATCTTATTACAAAACACATTTTGAGCAAGAGTCAGAACTTTCATGACTTTGAAAATTTCTGAACTTTGCCACCTTCAAGATCCCCAGTCAACTTTCAAGACTTTCAAATTCTGTGAATTCGAAATTGATCTCTCAAAAGTTACTTTGCTTCTTGATTCTTGAT</canonical_amplicon>
		<polymorphic_amplicon>AGTATGAAAAGGTTCAAAAATCACGACACTCGAGAAGAGCAATTTTGAACGTCGAATTTTTACGACAGCWTTTTTTTCCATCACCTGATCTTATTACAAAACACATTTTGAGCAAGAGTCAGAACTTTCATGACTTTGAAAATTTCTGAACTTTGCCACCTTCAAGATCCCCAGTCAACTTTCAAGACTTTCAAATTCTGTGAATTCGAAATTGATCTCTCAAAAGTTACTTTGCTTCTTGATTCTTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28268</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>626232</contig_pos>
        <strand></strand>
        <context>gtttcgttag[T/A]tgacacattt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GTTCCTGTCAAAGATTAAAAAAAGATGTCAACTGAGAAAGGTTTCGTTAG</left_flank>
        <right_flank>TGACACATTTTTCATATTCTTTACAGGAACCGAGATAAATTAGTTGGAAC</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTTGGCATTTAGCGAGTATACTAAAATTAGACTCGTACTATTCGGCTTCCTAGAATTCACTTACCGAAAACGAGTAATGGAAGGGCCATCACACTGTCGAGTTTGAGCTACCTTATATCGATTCCTGTCAAAGATAAAAAAGTTAACAAATAAATTGTTTATCATAGTATCACAAACATTTTATCAGTTGACACATTTTCGAAATCTAGCATAGGAGCCAGGAGAGGGCCCTTCTATTACAGGTTTTACGATATTATGCTCTCCATAAACGACTCCTTAGCCAGTATAGATTCTTCTAGGCTAGTGGGACAGGATGTTTTCAAAAAACTAGTATGGTAATCTCATAAACCTATTGCGAAAACAATTTGATCATAGTAAGCGCATCAATCCAATTTTTATGGTTTTGGAAATACACTAATCAGTTTTTTAAAAACAATAATTTCTCGGTTCCTGTCAAAGATTAAAAAAAGATGTCAACTGAGAAAGGTTTCGTTAGTTGACACATTTTTCATATTCTTTACAGGAACCGAGATAAATTAGTTGGAACTTTACAATATAGGTGCCCTTCTGTTACAGGTTTTACGGTAATTTAGTCGGTTTGAAGTTTCATGAATTGCTCAAGCATGAGCAAGAATCAAACGCTATACCTATTTAAAACCGTTTATTTTTCAGAAATTCCGTAAATGAAAGTGTAATAAAAGATGAACATTATTGGGAGAGGCGGCGGAGGAACAATGATGCATCCAGACGGAGTCGAGAAAAACGTCGGCTGAATGATCAAGCGATGGAAGAAAAGATAATGCAACTATCCGCTGAAAATGAGAGATTAAAGTCACAACTGGAAAATCGACCTGCAGTTGCTCCGGCTCCTCCCCCACAACCTGCTCCTGTAGTTGAACCTCCAACTGCTCTCATTATTCCAAGTGTTGCGAAAAATCTGTTTCCATCGGGACCAGTCGCCTCTCTGCAAGCCAGTTCAATGCTCTCTGTGCCACTT</canonical>
            <polymorphic>TATTTTGGCATTTAGCGAGTATACTAAAATTAGACTCGTACTATTCGGCTTCCTAGAATTCACTTACCGAAAACGAGTAATGGAAGGGCCATCACACTGTCGAGTTTGAGCTACCTTATATCGATTCCTGTCAAAGATAAAAAAGTTAACAAATAAATTGTTTATCATAGTATCACAAACATTTTATCAGTTGACACATTTTCGAAATCTAGCATAGGAGCCAGGAGAGGGCCCTTCTATTACAGGTTTTACGATATTATGCTCTCCATAAACGACTCCTTAGCCAGTATAGATTCTTCTAGGCTAGTGGGACAGGATGTTTTCAAAAAACTAGTATGGTAATCTCATAAACCTATTGCGAAAACAATTTGATCATAGTAAGCGCATCAATCCAATTTTTATGGTTTTGGAAATACACTAATCAGTTTTTTAAAAACAATAATTTCTCGGTTCCTGTCAAAGATTAAAAAAAGATGTCAACTGAGAAAGGTTTCGTTAGWTGACACATTTTTCATATTCTTTACAGGAACCGAGATAAATTAGTTGGAACTTTACAATATAGGTGCCCTTCTGTTACAGGTTTTACGGTAATTTAGTCGGTTTGAAGTTTCATGAATTGCTCAAGCATGAGCAAGAATCAAACGCTATACCTATTTAAAACCGTTTATTTTTCAGAAATTCCGTAAATGAAAGTGTAATAAAAGATGAACATTATTGGGAGAGGCGGCGGAGGAACAATGATGCATCCAGACGGAGTCGAGAAAAACGTCGGCTGAATGATCAAGCGATGGAAGAAAAGATAATGCAACTATCCGCTGAAAATGAGAGATTAAAGTCACAACTGGAAAATCGACCTGCAGTTGCTCCGGCTCCTCCCCCACAACCTGCTCCTGTAGTTGAACCTCCAACTGCTCTCATTATTCCAAGTGTTGCGAAAAATCTGTTTCCATCGGGACCAGTCGCCTCTCTGCAAGCCAGTTCAATGCTCTCTGTGCCACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>499 286 147 45 23</canonical_bands>
                <polymorphic_bands>522 286 147 45</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 286 126 45 23 21</canonical_bands>
                <polymorphic_bands>522 286 126 45 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCATAGTAAGCGCATCAATC</pcr_primer_p1>
		<pcr_primer_p2>AGCAATTCATGAAACTTCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCATAGTAAGCGCATCAATCCAATTTTTATGGTTTTGGAAATACACTAATCAGTTTTTTAAAAACAATAATTTCTCGGTTCCTGTCAAAGATTAAAAAAAGATGTCAACTGAGAAAGGTTTCGTTAGTTGACACATTTTTCATATTCTTTACAGGAACCGAGATAAATTAGTTGGAACTTTACAATATAGGTGCCCTTCTGTTACAGGTTTTACGGTAATTTAGTCGGTTTGAAGTTTCATGAATTGCT</canonical_amplicon>
		<polymorphic_amplicon>ATCATAGTAAGCGCATCAATCCAATTTTTATGGTTTTGGAAATACACTAATCAGTTTTTTAAAAACAATAATTTCTCGGTTCCTGTCAAAGATTAAAAAAAGATGTCAACTGAGAAAGGTTTCGTTAGWTGACACATTTTTCATATTCTTTACAGGAACCGAGATAAATTAGTTGGAACTTTACAATATAGGTGCCCTTCTGTTACAGGTTTTACGGTAATTTAGTCGGTTTGAAGTTTCATGAATTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28269</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>650838</contig_pos>
        <strand>+</strand>
        <context>AAAGTGARTG[A/C]TCTCAATAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGGCTATTTTTGTATATAGAGCTCACCAGTAAGTTTCAAAAAAGTGAGTG</left_flank>
        <right_flank>TCTCAATAAACTTTGGATTTCTAGAACGCTAAACGCTTTCCAAGACTCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTTTTTTTCTCAGAAGTTTTGAAATTCAGATGGAAGAAGATGACACAGGCGAATGTTCTTCTTCCCAGTTAAATGATAGTTTTGGAAACAAGGAAGGACTGGAGCTTTTGCAATATGAAAGAGCAACACTTGCCAAAACCCTTCCGGCAAGTGTACTCTTTGTTGTTGCCAGTGGATTGGGACTGGAACGTCTCTTTTTGGAACATCTGATTCTCTTCTCTGATCGTCGCCTGTTGGCACTTGTGTTGAATACAAACGAACACGATGAGAGCTACTTTGTTTCCAAACTCAAAGAACATTCCGTTGATTGTGACCCAAAAGTTATCAACTCGGAAGTTTCTATTAAGGATCGTCAATCGATTTACCTTGAGGGAGGCGTTCAGTTTTGTTCGAGTCGTGTTCTTCTAGTCGATCTTCTCCAAAATCGAATACCAGTAGATCGTATTGCGGCTATTTTTGTATATAGAGCTCACCAGTAAGTTTCAAAAAAGTGAGTGATCTCAATAAACTTTGGATTTCTAGAACGCTAAACGCTTTCCAAGACTCATTCATTCTCCGATTATATCGTGAAAAAAAGCCAGATGGTATGGTAAAAGCATTCACGGATGTTCCCAATGTACTCTCCTCGCTTGGACAATTGCAACGACTTGTTGATCGTCTCTACATTCGCCATGTTGAATTGATGCCTCGATTTTCTAGCATCATTGAAACGGAACTCAATAGATATCAACTCAAAACTGCAATCTTCTCGGTAGATGTACCTACAGCACTGAGACGTGTCCATCGAACCCTCATCGAATTCATTAAAGTATGTGTTCGAGACTTGAGAACGTCTTCTCTATCTGGGAAACAAACCGATGAACCCGTTGAAGAAATGATTCATGTTCCTTGGGCAACTACACAACTTGAGAAGAGACTTCGTGATAGACGTGGAAATATATCAGAAAAACAACAACGTCTTCTGAATGATGTTGCCTCTCTTCGAGAAATTCTACAAC</canonical>
            <polymorphic>TCTTTTTTTTCTCAGAAGTTTTGAAATTCAGATGGAAGAAGATGACACAGGCGAATGTTCTTCTTCCCAGTTAAATGATAGTTTTGGAAACAAGGAAGGACTGGAGCTTTTGCAATATGAAAGAGCAACACTTGCCAAAACCCTTCCGGCAAGTGTACTCTTTGTTGTTGCCAGTGGATTGGGACTGGAACGTCTCTTTTTGGAACATCTGATTCTCTTCTCTGATCGTCGCCTGTTGGCACTTGTGTTGAATACAAACGAACACGATGAGAGCTACTTTGTTTCCAAACTCAAAGAACATTCCGTTGATTGTGACCCAAAAGTTATCAACTCGGAAGTTTCTATTAAGGATCGTCAATCGATTTACCTTGAGGGAGGCGTTCAGTTTTGTTCGAGTCGTGTTCTTCTAGTCGATCTTCTCCAAAATCGAATACCAGTAGATCGTATTGCGGCTATTTTTGTATATAGAGCTCACCAGTAAGTTTCAAAAAAGTGAGTGMTCTCAATAAACTTTGGATTTCTAGAACGCTAAACGCTTTCCAAGACTCATTCATTCTCCGATTATATCGTGAAAAAAAGCCAGATGGTATGGTAAAAGCATTCACGGATGTTCCCAATGTACTCTCCTCGCTTGGACAATTGCAACGACTTGTTGATCGTCTCTACATTCGCCATGTTGAATTGATGCCTCGATTTTCTAGCATCATTGAAACGGAACTCAATAGATATCAACTCAAAACTGCAATCTTCTCGGTAGATGTACCTACAGCACTGAGACGTGTCCATCGAACCCTCATCGAATTCATTAAAGTATGTGTTCGAGACTTGAGAACGTCTTCTCTATCTGGGAAACAAACCGATGAACCCGTTGAAGAAATGATTCATGTTCCTTGGGCAACTACACAACTTGAGAAGAGACTTCGTGATAGACGTGGAAATATATCAGAAAAACAACAACGTCTTCTGAATGATGTTGCCTCTCTTCGAGAAATTCTACAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>346 223 156 126 63 59 27</canonical_bands>
                <polymorphic_bands>346 223 215 126 63 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGTTATCAACTCGGAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>TATAATCGGAGAATGAATGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAAGTTATCAACTCGGAAGTTTCTATTAAGGATCGTCAATCGATTTACCTTGAGGGAGGCGTTCAGTTTTGTTCGAGTCGTGTTCTTCTAGTCGATCTTCTCCAAAATCGAATACCAGTAGATCGTATTGCGGCTATTTTTGTATATAGAGCTCACCAGTAAGTTTCAAAAAAGTGAGTGATCTCAATAAACTTTGGATTTCTAGAACGCTAAACGCTTTCCAAGACTCATTCATTCTCCGATTATA</canonical_amplicon>
		<polymorphic_amplicon>AAAAGTTATCAACTCGGAAGTTTCTATTAAGGATCGTCAATCGATTTACCTTGAGGGAGGCGTTCAGTTTTGTTCGAGTCGTGTTCTTCTAGTCGATCTTCTCCAAAATCGAATACCAGTAGATCGTATTGCGGCTATTTTTGTATATAGAGCTCACCAGTAAGTTTCAAAAAAGTGAGTGMTCTCAATAAACTTTGGATTTCTAGAACGCTAAACGCTTTCCAAGACTCATTCATTCTCCGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28270</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>684241</contig_pos>
        <strand>+</strand>
        <context>TGTTGTTGTT[G/T]TTTTTTGGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGTTTCAAGAAAAAAGGTTGGGAAGATTAAATAGTTTTTTGTTGTTGTT</left_flank>
        <right_flank>TTTTTTGGGGAAGAAGAAGGGAGGGAAAGAGGAAAAGAAGTGGCAGCTAT</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGACAAAGATTCACTGATAAGCTCGGTCTTACTGTTCGTTTCTTTTTTTGGCCTATCAATGAACAATACTAAATTTTCCAGCTCTCCAAGAAGAAGACCCATTTCACTGTACAAGGACAAATCGGGGGATACGTCACTCAATACAAGGGAGGACGAGTTACATTCGCCACTGCTCGTGGAGCTGGACACATGGTGCCAACTGATAAGCCAGCTGTCGCCGAGCATCTTATTCATTCATTCCTGTTCAACAAGGCTTTCTAGGGTGTATCTTTTTTCTTCGCTAATAAATATTTTCCAAAACTAACTCTTTTCTTCGGCTAGGCAATTGTTTAGAAACGCATTTTATAAGATTTGGAAATTGAAACAATAAAAAAGAATCAAAAGAAAAATAAGGATTTTTTGGGGGTTCAGGGAGAGGAGGGAGAGAATTGGGGTGGATGAGTGTTCATGTTTCAAGAAAAAAGGTTGGGAAGATTAAATAGTTTTTTGTTGTTGTTTTTTTTTGGGGAAGAAGAAGGGAGGGAAAGAGGAAAAGAAGTGGCAGCTATCCGAGTTATGTGTGTGAGAACTTTATCAAAAAATTTTGCGATCGGAAACTTACAAAATCACGGTAGAAGAAAAAAAAGTATATTCAAGGAAAGGGGTACCGAGATAAAGATGAAAAAAAAGAACAGAGTGGGACTGGAAAGGGATTGATGGGACACAGAAAGAGGTGGGGGAAAAGGGGGGGGGGTCAATTAAATTAGTGGAGAAAAGGGATGTGAAGAAGAAGAAGAAGGATGAGAAGGAGAAGATGATACCAGAAATAGAAAAAAGAAAGAAAGCTTAAATTATCGTAATAATAATTAGGTGAGTAGAGAATATCGATTTTTGGGATAGGGGAGCGAGCCTGTTGAATTGAGATAAAAAAGTGGATCTCATATTGTGCTTTTCTTGATGGGGTTTTCGAAATTTAGAACGCATTTTTTCGAGCTCGTTCTAGTCGTGATTTGAAAGTA</canonical>
            <polymorphic>TGGGACAAAGATTCACTGATAAGCTCGGTCTTACTGTTCGTTTCTTTTTTTGGCCTATCAATGAACAATACTAAATTTTCCAGCTCTCCAAGAAGAAGACCCATTTCACTGTACAAGGACAAATCGGGGGATACGTCACTCAATACAAGGGAGGACGAGTTACATTCGCCACTGCTCGTGGAGCTGGACACATGGTGCCAACTGATAAGCCAGCTGTCGCCGAGCATCTTATTCATTCATTCCTGTTCAACAAGGCTTTCTAGGGTGTATCTTTTTTCTTCGCTAATAAATATTTTCCAAAACTAACTCTTTTCTTCGGCTAGGCAATTGTTTAGAAACGCATTTTATAAGATTTGGAAATTGAAACAATAAAAAAGAATCAAAAGAAAAATAAGGATTTTTTGGGGGTTCAGGGAGAGGAGGGAGAGAATTGGGGTGGATGAGTGTTCATGTTTCAAGAAAAAAGGTTGGGAAGATTAAATAGTTTTTTGTTGTTGTTKTTTTTTGGGGAAGAAGAAGGGAGGGAAAGAGGAAAAGAAGTGGCAGCTATCCGAGTTATGTGTGTGAGAACTTTATCAAAAAATTTTGCGATCGGAAACTTACAAAATCACGGTAGAAGAAAAAAAAGTATATTCAAGGAAAGGGGTACCGAGATAAAGATGAAAAAAAAGAACAGAGTGGGACTGGAAAGGGATTGATGGGACACAGAAAGAGGTGGGGGAAAAGGGGGGGGGGTCAATTAAATTAGTGGAGAAAAGGGATGTGAAGAAGAAGAAGAAGGATGAGAAGGAGAAGATGATACCAGAAATAGAAAAAAGAAAGAAAGCTTAAATTATCGTAATAATAATTAGGTGAGTAGAGAATATCGATTTTTGGGATAGGGGAGCGAGCCTGTTGAATTGAGATAAAAAAGTGGATCTCATATTGTGCTTTTCTTGATGGGGTTTTCGAAATTTAGAACGCATTTTTTCGAGCTCGTTCTAGTCGTGATTTGAAAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAATCAAAAGAAAAATAAGG</pcr_primer_p1>
		<pcr_primer_p2>TTCTTCTACCGTGATTTTGTAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAATCAAAAGAAAAATAAGGATTTTTTGGGGGTTCAGGGAGAGGAGGGAGAGAATTGGGGTGGATGAGTGTTCATGTTTCAAGAAAAAAGGTTGGGAAGATTAAATAGTTTTTTGTTGTTGTTTTTTTTTGGGGAAGAAGAAGGGAGGGAAAGAGGAAAAGAAGTGGCAGCTATCCGAGTTATGTGTGTGAGAACTTTATCAAAAAATTTTGCGATCGGAAACTTACAAAATCACGGTAGAAGAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAATCAAAAGAAAAATAAGGATTTTTTGGGGGTTCAGGGAGAGGAGGGAGAGAATTGGGGTGGATGAGTGTTCATGTTTCAAGAAAAAAGGTTGGGAAGATTAAATAGTTTTTTGTTGTTGTTKTTTTTTGGGGAAGAAGAAGGGAGGGAAAGAGGAAAAGAAGTGGCAGCTATCCGAGTTATGTGTGTGAGAACTTTATCAAAAAATTTTGCGATCGGAAACTTACAAAATCACGGTAGAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28271</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>684293</contig_pos>
        <strand>+</strand>
        <context>GGCAGCTATC[C/T]GAGTTATGTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTGGGGAAGAAGAAGGGAGGGAAAGAGGAAAAGAAGTGGCAGCTATC</left_flank>
        <right_flank>GAGTTATGTGTGTGAGAACTTTATCAAAAAATTTTGCGATCGGAAACTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCTATCAATGAACAATACTAAATTTTCCAGCTCTCCAAGAAGAAGACCCATTTCACTGTACAAGGACAAATCGGGGGATACGTCACTCAATACAAGGGAGGACGAGTTACATTCGCCACTGCTCGTGGAGCTGGACACATGGTGCCAACTGATAAGCCAGCTGTCGCCGAGCATCTTATTCATTCATTCCTGTTCAACAAGGCTTTCTAGGGTGTATCTTTTTTCTTCGCTAATAAATATTTTCCAAAACTAACTCTTTTCTTCGGCTAGGCAATTGTTTAGAAACGCATTTTATAAGATTTGGAAATTGAAACAATAAAAAAGAATCAAAAGAAAAATAAGGATTTTTTGGGGGTTCAGGGAGAGGAGGGAGAGAATTGGGGTGGATGAGTGTTCATGTTTCAAGAAAAAAGGTTGGGAAGATTAAATAGTTTTTTGTTGTTGTTTTTTTTTGGGGAAGAAGAAGGGAGGGAAAGAGGAAAAGAAGTGGCAGCTATCCGAGTTATGTGTGTGAGAACTTTATCAAAAAATTTTGCGATCGGAAACTTACAAAATCACGGTAGAAGAAAAAAAAGTATATTCAAGGAAAGGGGTACCGAGATAAAGATGAAAAAAAAGAACAGAGTGGGACTGGAAAGGGATTGATGGGACACAGAAAGAGGTGGGGGAAAAGGGGGGGGGGTCAATTAAATTAGTGGAGAAAAGGGATGTGAAGAAGAAGAAGAAGGATGAGAAGGAGAAGATGATACCAGAAATAGAAAAAAGAAAGAAAGCTTAAATTATCGTAATAATAATTAGGTGAGTAGAGAATATCGATTTTTGGGATAGGGGAGCGAGCCTGTTGAATTGAGATAAAAAAGTGGATCTCATATTGTGCTTTTCTTGATGGGGTTTTCGAAATTTAGAACGCATTTTTTCGAGCTCGTTCTAGTCGTGATTTGAAAGTATTGTGCTCTGCGGCTCCATCAAAGTAAATTTCTGAACGCCGAGCACAATTGT</canonical>
            <polymorphic>GCCTATCAATGAACAATACTAAATTTTCCAGCTCTCCAAGAAGAAGACCCATTTCACTGTACAAGGACAAATCGGGGGATACGTCACTCAATACAAGGGAGGACGAGTTACATTCGCCACTGCTCGTGGAGCTGGACACATGGTGCCAACTGATAAGCCAGCTGTCGCCGAGCATCTTATTCATTCATTCCTGTTCAACAAGGCTTTCTAGGGTGTATCTTTTTTCTTCGCTAATAAATATTTTCCAAAACTAACTCTTTTCTTCGGCTAGGCAATTGTTTAGAAACGCATTTTATAAGATTTGGAAATTGAAACAATAAAAAAGAATCAAAAGAAAAATAAGGATTTTTTGGGGGTTCAGGGAGAGGAGGGAGAGAATTGGGGTGGATGAGTGTTCATGTTTCAAGAAAAAAGGTTGGGAAGATTAAATAGTTTTTTGTTGTTGTTTTTTTTTGGGGAAGAAGAAGGGAGGGAAAGAGGAAAAGAAGTGGCAGCTATCYGAGTTATGTGTGTGAGAACTTTATCAAAAAATTTTGCGATCGGAAACTTACAAAATCACGGTAGAAGAAAAAAAAGTATATTCAAGGAAAGGGGTACCGAGATAAAGATGAAAAAAAAGAACAGAGTGGGACTGGAAAGGGATTGATGGGACACAGAAAGAGGTGGGGGAAAAGGGGGGGGGGTCAATTAAATTAGTGGAGAAAAGGGATGTGAAGAAGAAGAAGAAGGATGAGAAGGAGAAGATGATACCAGAAATAGAAAAAAGAAAGAAAGCTTAAATTATCGTAATAATAATTAGGTGAGTAGAGAATATCGATTTTTGGGATAGGGGAGCGAGCCTGTTGAATTGAGATAAAAAAGTGGATCTCATATTGTGCTTTTCTTGATGGGGTTTTCGAAATTTAGAACGCATTTTTTCGAGCTCGTTCTAGTCGTGATTTGAAAGTATTGTGCTCTGCGGCTCCATCAAAGTAAATTTCTGAACGCCGAGCACAATTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAATCAAAAGAAAAATAAGG</pcr_primer_p1>
		<pcr_primer_p2>TTCTTCTACCGTGATTTTGTAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAATCAAAAGAAAAATAAGGATTTTTTGGGGGTTCAGGGAGAGGAGGGAGAGAATTGGGGTGGATGAGTGTTCATGTTTCAAGAAAAAAGGTTGGGAAGATTAAATAGTTTTTTGTTGTTGTTTTTTTTTGGGGAAGAAGAAGGGAGGGAAAGAGGAAAAGAAGTGGCAGCTATCCGAGTTATGTGTGTGAGAACTTTATCAAAAAATTTTGCGATCGGAAACTTACAAAATCACGGTAGAAGAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAATCAAAAGAAAAATAAGGATTTTTTGGGGGTTCAGGGAGAGGAGGGAGAGAATTGGGGTGGATGAGTGTTCATGTTTCAAGAAAAAAGGTTGGGAAGATTAAATAGTTTTTTGTTGTTGTTTTTTTTTGGGGAAGAAGAAGGGAGGGAAAGAGGAAAAGAAGTGGCAGCTATCYGAGTTATGTGTGTGAGAACTTTATCAAAAAATTTTGCGATCGGAAACTTACAAAATCACGGTAGAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28272</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>713433</contig_pos>
        <strand>+</strand>
        <context>TAAACTGAGA[G/T]ATAAATTTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAACCTGCAAAAAATAGGTTTAAGACGCTCCGAATTGGGTTAAACTGAGA</left_flank>
        <right_flank>ATAAATTTATGAATGCTCTTGGCATGCATTCCGATAAGATAATAATTGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCGCTGCTGTCCCCATTTCCAAAGGTGGGAAAAGGGATTGCAGATGCATCTGGTGCAACTTGATCTGATGATGATGGATGATGCCATACTGGATCGTCGAGTCGGAGACGAGCAGTCTGAAAAAATAAAGAATGATATGCTCGCACTAAACAATTTACTTGCCTGCGTTGCATAGTTTTCTAACTCTGCGTTTTCGCCAATGTTGTCAAGCCCTCCTCCGAATGTTTCATCGTTGGCGGCATCGAACTCATCGTCAAAAATGTTGTGTTCTTCATCGCTATCTGCTAGGGACTCGGGGAAATCGTCTGAAAATATGCAATGAAACAAGAACAACATGAATGAAATCTTACCGAACATTAATTCTCCTTCAATCTCCTCGAGAGTTTTACCATACTTTTTAACTTCATCCATACCCGATCGTTTGAGTTGATGATTAGATGTCCGTCAAAACCTGCAAAAAATAGGTTTAAGACGCTCCGAATTGGGTTAAACTGAGAGATAAATTTATGAATGCTCTTGGCATGCATTCCGATAAGATAATAATTGGCTTACCACAGCCATAACTATCGATTTTTTCAGAAGAATGTTCCCTAATTGTAAAAAAACGAATCATTGAAAAATTGAGCAAAAAGATCGATTTTCTGTGGAAAACGCCTGCTGTCCGCCCGTACACAGCCTCGTATTTCGCAGCAAAGAAAATGTCGTCGCGATGAGACCAGCTGGCTAATCACGAGTGTGTGCCTTTAATCAGAGACCATGAGAAAATGAGAGACCCCAGAGAGCGCAAAACGAGGCAATTCAAAAATACTTTTTCACAGCAATGTTTCCTCTATCAGAGAAACATTTACCGTAAAACCTGTATTAGAAGAGCCCCTTCAATAAAAGAATCAACGAAAAGCGTGTAACTTTTCTTTTGTAATTCATGTCATTCTTCTGTCTGAGAGCGTGCAGTATGCATAATTTTGTTATAAATGAAAGAACATATAAGTAATCTTACA</canonical>
            <polymorphic>TGTCGCTGCTGTCCCCATTTCCAAAGGTGGGAAAAGGGATTGCAGATGCATCTGGTGCAACTTGATCTGATGATGATGGATGATGCCATACTGGATCGTCGAGTCGGAGACGAGCAGTCTGAAAAAATAAAGAATGATATGCTCGCACTAAACAATTTACTTGCCTGCGTTGCATAGTTTTCTAACTCTGCGTTTTCGCCAATGTTGTCAAGCCCTCCTCCGAATGTTTCATCGTTGGCGGCATCGAACTCATCGTCAAAAATGTTGTGTTCTTCATCGCTATCTGCTAGGGACTCGGGGAAATCGTCTGAAAATATGCAATGAAACAAGAACAACATGAATGAAATCTTACCGAACATTAATTCTCCTTCAATCTCCTCGAGAGTTTTACCATACTTTTTAACTTCATCCATACCCGATCGTTTGAGTTGATGATTAGATGTCCGTCAAAACCTGCAAAAAATAGGTTTAAGACGCTCCGAATTGGGTTAAACTGAGAKATAAATTTATGAATGCTCTTGGCATGCATTCCGATAAGATAATAATTGGCTTACCACAGCCATAACTATCGATTTTTTCAGAAGAATGTTCCCTAATTGTAAAAAAACGAATCATTGAAAAATTGAGCAAAAAGATCGATTTTCTGTGGAAAACGCCTGCTGTCCGCCCGTACACAGCCTCGTATTTCGCAGCAAAGAAAATGTCGTCGCGATGAGACCAGCTGGCTAATCACGAGTGTGTGCCTTTAATCAGAGACCATGAGAAAATGAGAGACCCCAGAGAGCGCAAAACGAGGCAATTCAAAAATACTTTTTCACAGCAATGTTTCCTCTATCAGAGAAACATTTACCGTAAAACCTGTATTAGAAGAGCCCCTTCAATAAAAGAATCAACGAAAAGCGTGTAACTTTTCTTTTGTAATTCATGTCATTCTTCTGTCTGAGAGCGTGCAGTATGCATAATTTTGTTATAAATGAAAGAACATATAAGTAATCTTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATTAATTCTCCTTCAATCTCC</pcr_primer_p1>
		<pcr_primer_p2>TACAATTAGGGAACATTCTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACATTAATTCTCCTTCAATCTCCTCGAGAGTTTTACCATACTTTTTAACTTCATCCATACCCGATCGTTTGAGTTGATGATTAGATGTCCGTCAAAACCTGCAAAAAATAGGTTTAAGACGCTCCGAATTGGGTTAAACTGAGAGATAAATTTATGAATGCTCTTGGCATGCATTCCGATAAGATAATAATTGGCTTACCACAGCCATAACTATCGATTTTTTCAGAAGAATGTTCCCTAATTGTA</canonical_amplicon>
		<polymorphic_amplicon>ACATTAATTCTCCTTCAATCTCCTCGAGAGTTTTACCATACTTTTTAACTTCATCCATACCCGATCGTTTGAGTTGATGATTAGATGTCCGTCAAAACCTGCAAAAAATAGGTTTAAGACGCTCCGAATTGGGTTAAACTGAGAKATAAATTTATGAATGCTCTTGGCATGCATTCCGATAAGATAATAATTGGCTTACCACAGCCATAACTATCGATTTTTTCAGAAGAATGTTCCCTAATTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28273</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>763243</contig_pos>
        <strand>+</strand>
        <context>AATCTACTCA[G/T]TTTTTTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAAAAGTCATTTACATAGAAAAAGCTAAGAATAGACGAAGAATCTACTCA</left_flank>
        <right_flank>TTTTTTTTCACTTCCGATCCGTTTCGAATCATTTTGATGAAGATGATAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACCTGAATACAGAATCATTCCAGTAAAGCATGTTGGAATAATTTCAGCGATGATCATCGCGATGATATATTCCCAATTCTCTTCTGTTTATGGTACTTCTCTTGTAATCTAGCGGCCCCCTACTTTCATCATAACACAGTCAATTTTTTTGTTTCGAAAGTTCCTAGTAATCACCTGGTATAAAATCAATAAGAATCCCCTCTTCTGGTGTCCTTTCTCTACTTCCCATTAGATGTCTTATTTGATTCTGTCTCAATGATGGCCGGAAGCAATGTTAAGGAAACAAGTCTATTTTCGCCCACTGCCCCATTTGTTTCTCATGATACACCTAGTTTATCTTTGAACTGAACTTCTGGATTCTCCTAGTTTCGTACGCTATTTCTCATGTTCTTCTTTGATTTCGATTCAATGAATCAAAGTTCACAGGCTGTGTCTTCTTTTGTATTGGTAAAAGTCATTTACATAGAAAAAGCTAAGAATAGACGAAGAATCTACTCATTTTTTTTTCACTTCCGATCCGTTTCGAATCATTTTGATGAAGATGATAATTCTGGTATTTTTTGCAGAAAACTGTGATATGACACGGTGCGAAAAAGAGGAAAGATGACACGTATTGATGAGTCGTCTGACTAATTGAACTTATTGAAGTTAATAGGAGAGGGATATGTTGACACTTTGGACTATGATTCTATTTTTAGAAGCAGTTGTACTTTTTGTAAAAAGAATCAGGGAAACAAATGGGAAGAAGTCAGCTGAATTCTGAAATCATCTGGGCTTTTTATAGATATCTTTTGAGAAAAATCCTGTTTTACGGGATATATCAGAAGGGCTGGTCTTTCTATGGTTCCAAGGTCTCTCTGGAGGGCCCTTCTATTAGAAGCGTCCTTCAATTATAGGGTGCTCTTCTATTTTTCCGGCCATTTCTACCTAAAAATTTCATTTAAAAGTTGGTGATTTCTTGTTCAAAATTTGTTAAAATCTGTGAATTCCACCAAAATT</canonical>
            <polymorphic>TACCTGAATACAGAATCATTCCAGTAAAGCATGTTGGAATAATTTCAGCGATGATCATCGCGATGATATATTCCCAATTCTCTTCTGTTTATGGTACTTCTCTTGTAATCTAGCGGCCCCCTACTTTCATCATAACACAGTCAATTTTTTTGTTTCGAAAGTTCCTAGTAATCACCTGGTATAAAATCAATAAGAATCCCCTCTTCTGGTGTCCTTTCTCTACTTCCCATTAGATGTCTTATTTGATTCTGTCTCAATGATGGCCGGAAGCAATGTTAAGGAAACAAGTCTATTTTCGCCCACTGCCCCATTTGTTTCTCATGATACACCTAGTTTATCTTTGAACTGAACTTCTGGATTCTCCTAGTTTCGTACGCTATTTCTCATGTTCTTCTTTGATTTCGATTCAATGAATCAAAGTTCACAGGCTGTGTCTTCTTTTGTATTGGTAAAAGTCATTTACATAGAAAAAGCTAAGAATAGACGAAGAATCTACTCAKTTTTTTTTCACTTCCGATCCGTTTCGAATCATTTTGATGAAGATGATAATTCTGGTATTTTTTGCAGAAAACTGTGATATGACACGGTGCGAAAAAGAGGAAAGATGACACGTATTGATGAGTCGTCTGACTAATTGAACTTATTGAAGTTAATAGGAGAGGGATATGTTGACACTTTGGACTATGATTCTATTTTTAGAAGCAGTTGTACTTTTTGTAAAAAGAATCAGGGAAACAAATGGGAAGAAGTCAGCTGAATTCTGAAATCATCTGGGCTTTTTATAGATATCTTTTGAGAAAAATCCTGTTTTACGGGATATATCAGAAGGGCTGGTCTTTCTATGGTTCCAAGGTCTCTCTGGAGGGCCCTTCTATTAGAAGCGTCCTTCAATTATAGGGTGCTCTTCTATTTTTCCGGCCATTTCTACCTAAAAATTTCATTTAAAAGTTGGTGATTTCTTGTTCAAAATTTGTTAAAATCTGTGAATTCCACCAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTATTTCTCATGTTCTTCTTTG</pcr_primer_p1>
		<pcr_primer_p2>ACTCATCAATACGTGTCATCTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCTATTTCTCATGTTCTTCTTTGATTTCGATTCAATGAATCAAAGTTCACAGGCTGTGTCTTCTTTTGTATTGGTAAAAGTCATTTACATAGAAAAAGCTAAGAATAGACGAAGAATCTACTCATTTTTTTTTCACTTCCGATCCGTTTCGAATCATTTTGATGAAGATGATAATTCTGGTATTTTTTGCAGAAAACTGTGATATGACACGGTGCGAAAAAGAGGAAAGATGACACGTATTGATGAGT</canonical_amplicon>
		<polymorphic_amplicon>GCTATTTCTCATGTTCTTCTTTGATTTCGATTCAATGAATCAAAGTTCACAGGCTGTGTCTTCTTTTGTATTGGTAAAAGTCATTTACATAGAAAAAGCTAAGAATAGACGAAGAATCTACTCAKTTTTTTTTCACTTCCGATCCGTTTCGAATCATTTTGATGAAGATGATAATTCTGGTATTTTTTGCAGAAAACTGTGATATGACACGGTGCGAAAAAGAGGAAAGATGACACGTATTGATGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28274</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>763276</contig_pos>
        <strand></strand>
        <context>TTCGAATCAT[T/G]TTGATGAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GACGAAGAATCTACTCATTTTTTTTTCACTTCCGATCCGTTTCGAATCAT</left_flank>
        <right_flank>TTGATGAAGATGATAATTCTGGTATTTTTTGCAGAAAACTGTGATATGAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGAATAATTTCAGCGATGATCATCGCGATGATATATTCCCAATTCTCTTCTGTTTATGGTACTTCTCTTGTAATCTAGCGGCCCCCTACTTTCATCATAACACAGTCAATTTTTTTGTTTCGAAAGTTCCTAGTAATCACCTGGTATAAAATCAATAAGAATCCCCTCTTCTGGTGTCCTTTCTCTACTTCCCATTAGATGTCTTATTTGATTCTGTCTCAATGATGGCCGGAAGCAATGTTAAGGAAACAAGTCTATTTTCGCCCACTGCCCCATTTGTTTCTCATGATACACCTAGTTTATCTTTGAACTGAACTTCTGGATTCTCCTAGTTTCGTACGCTATTTCTCATGTTCTTCTTTGATTTCGATTCAATGAATCAAAGTTCACAGGCTGTGTCTTCTTTTGTATTGGTAAAAGTCATTTACATAGAAAAAGCTAAGAATAGACGAAGAATCTACTCATTTTTTTTTCACTTCCGATCCGTTTCGAATCATTTTGATGAAGATGATAATTCTGGTATTTTTTGCAGAAAACTGTGATATGACACGGTGCGAAAAAGAGGAAAGATGACACGTATTGATGAGTCGTCTGACTAATTGAACTTATTGAAGTTAATAGGAGAGGGATATGTTGACACTTTGGACTATGATTCTATTTTTAGAAGCAGTTGTACTTTTTGTAAAAAGAATCAGGGAAACAAATGGGAAGAAGTCAGCTGAATTCTGAAATCATCTGGGCTTTTTATAGATATCTTTTGAGAAAAATCCTGTTTTACGGGATATATCAGAAGGGCTGGTCTTTCTATGGTTCCAAGGTCTCTCTGGAGGGCCCTTCTATTAGAAGCGTCCTTCAATTATAGGGTGCTCTTCTATTTTTCCGGCCATTTCTACCTAAAAATTTCATTTAAAAGTTGGTGATTTCTTGTTCAAAATTTGTTAAAATCTGTGAATTCCACCAAAATTAAGCTAGTTTTTGAGCAAAAAAGAGTGTTTCAA</canonical>
            <polymorphic>TTGGAATAATTTCAGCGATGATCATCGCGATGATATATTCCCAATTCTCTTCTGTTTATGGTACTTCTCTTGTAATCTAGCGGCCCCCTACTTTCATCATAACACAGTCAATTTTTTTGTTTCGAAAGTTCCTAGTAATCACCTGGTATAAAATCAATAAGAATCCCCTCTTCTGGTGTCCTTTCTCTACTTCCCATTAGATGTCTTATTTGATTCTGTCTCAATGATGGCCGGAAGCAATGTTAAGGAAACAAGTCTATTTTCGCCCACTGCCCCATTTGTTTCTCATGATACACCTAGTTTATCTTTGAACTGAACTTCTGGATTCTCCTAGTTTCGTACGCTATTTCTCATGTTCTTCTTTGATTTCGATTCAATGAATCAAAGTTCACAGGCTGTGTCTTCTTTTGTATTGGTAAAAGTCATTTACATAGAAAAAGCTAAGAATAGACGAAGAATCTACTCATTTTTTTTTCACTTCCGATCCGTTTCGAATCATKTTGATGAAGATGATAATTCTGGTATTTTTTGCAGAAAACTGTGATATGACACGGTGCGAAAAAGAGGAAAGATGACACGTATTGATGAGTCGTCTGACTAATTGAACTTATTGAAGTTAATAGGAGAGGGATATGTTGACACTTTGGACTATGATTCTATTTTTAGAAGCAGTTGTACTTTTTGTAAAAAGAATCAGGGAAACAAATGGGAAGAAGTCAGCTGAATTCTGAAATCATCTGGGCTTTTTATAGATATCTTTTGAGAAAAATCCTGTTTTACGGGATATATCAGAAGGGCTGGTCTTTCTATGGTTCCAAGGTCTCTCTGGAGGGCCCTTCTATTAGAAGCGTCCTTCAATTATAGGGTGCTCTTCTATTTTTCCGGCCATTTCTACCTAAAAATTTCATTTAAAAGTTGGTGATTTCTTGTTCAAAATTTGTTAAAATCTGTGAATTCCACCAAAATTAAGCTAGTTTTTGAGCAAAAAAGAGTGTTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTATTTCTCATGTTCTTCTTTG</pcr_primer_p1>
		<pcr_primer_p2>ACTCATCAATACGTGTCATCTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCTATTTCTCATGTTCTTCTTTGATTTCGATTCAATGAATCAAAGTTCACAGGCTGTGTCTTCTTTTGTATTGGTAAAAGTCATTTACATAGAAAAAGCTAAGAATAGACGAAGAATCTACTCATTTTTTTTTCACTTCCGATCCGTTTCGAATCATTTTGATGAAGATGATAATTCTGGTATTTTTTGCAGAAAACTGTGATATGACACGGTGCGAAAAAGAGGAAAGATGACACGTATTGATGAGT</canonical_amplicon>
		<polymorphic_amplicon>GCTATTTCTCATGTTCTTCTTTGATTTCGATTCAATGAATCAAAGTTCACAGGCTGTGTCTTCTTTTGTATTGGTAAAAGTCATTTACATAGAAAAAGCTAAGAATAGACGAAGAATCTACTCATTTTTTTTTCACTTCCGATCCGTTTCGAATCATKTTGATGAAGATGATAATTCTGGTATTTTTTGCAGAAAACTGTGATATGACACGGTGCGAAAAAGAGGAAAGATGACACGTATTGATGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28275</snp_id>
        <super_contig>c003500522.Contig5</super_contig>
        <contig_pos>785029</contig_pos>
        <strand>+</strand>
        <context>AGATTCTTCC[C/T]AGAATTCCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTAATGCAATAAAAACTTTTGGTCGGAGTCCCCCTTTAAGATTCTTCC</left_flank>
        <right_flank>AGAATTCCCATCTTGTACAATCTTAGATTCATTAGCTTTAATCGTCGTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGGACTCCGACCAGAAATTTTTATTGCATTAAAATGTGTTAAAATTTATCTATTTTTCAAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATCTCCGAAAAACGGCGTTGAAAAGGAAGAAAATTCAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCACCTGACAGCCTTTTTTTCAAGTTGCCGACAGTGGTTTTTTACGTTTTTTACCTGCCGGACATGAAATTGAAAAAAATCCGGAAAATTTGCCACATAGGAAAGGCGCCCGCTGCCGTGGCCTAGGTTTCTCACTAAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGGCGTTTTTTGGGAATTTCGGATTTTTTGTGAATTTTTTCGCAATATTATTCGGAAAATAGATAACTTTTAAAACATTTTAATGCAATAAAAACTTTTGGTCGGAGTCCCCCTTTAAGATTCTTCCTAGAATTCCCATCTTGTACAATCTTAGATTCATTAGCTTTAATCGTCGTTGATCCCTGTTACCACTTGCACTTATCACACGCAAAAGCAATTATGAATATGAATAAACCTTGTAAAATTCCCTGTTTGTCTTAATTAGAGTTTCAGTGTGTATAGTGTAGGACAAGAGAAAACGAATTCTTCTCGATACGGAGTTGAGAGAAGAATAATAATTTTCCCTCAAATCTACAGTAACCCGACTGCTTCAAATCCTATCAGGGGTCTCAATTCTAAATTTTATGGGTTGATTTTGGTATCAAAAAAATTTTCGTAAAATTCTGCACAGATCCTACTAAAAATCCTTATGAATGGACCAGCGGATTTCTTGAAAATTCTCGAAAACCTTTTTTCGGTCTGTTTTTCAATTCTCTACATTCTCTACTATTGAAAAAAAAAGAAAAAATTGACGCAGAATTTTTTATAGCCGAAAAATCGAAATTTCGACTGAATCCAGAAACGCGCC</canonical>
            <polymorphic>GGGGACTCCGACCAGAAATTTTTATTGCATTAAAATGTGTTAAAATTTATCTATTTTTCAAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATCTCCGAAAAACGGCGTTGAAAAGGAAGAAAATTCAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCACCTGACAGCCTTTTTTTCAAGTTGCCGACAGTGGTTTTTTACGTTTTTTACCTGCCGGACATGAAATTGAAAAAAATCCGGAAAATTTGCCACATAGGAAAGGCGCCCGCTGCCGTGGCCTAGGTTTCTCACTAAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGGCGTTTTTTGGGAATTTCGGATTTTTTGTGAATTTTTTCGCAATATTATTCGGAAAATAGATAACTTTTAAAACATTTTAATGCAATAAAAACTTTTGGTCGGAGTCCCCCTTTAAGATTCTTCCYAGAATTCCCATCTTGTACAATCTTAGATTCATTAGCTTTAATCGTCGTTGATCCCTGTTACCACTTGCACTTATCACACGCAAAAGCAATTATGAATATGAATAAACCTTGTAAAATTCCCTGTTTGTCTTAATTAGAGTTTCAGTGTGTATAGTGTAGGACAAGAGAAAACGAATTCTTCTCGATACGGAGTTGAGAGAAGAATAATAATTTTCCCTCAAATCTACAGTAACCCGACTGCTTCAAATCCTATCAGGGGTCTCAATTCTAAATTTTATGGGTTGATTTTGGTATCAAAAAAATTTTCGTAAAATTCTGCACAGATCCTACTAAAAATCCTTATGAATGGACCAGCGGATTTCTTGAAAATTCTCGAAAACCTTTTTTCGGTCTGTTTTTCAATTCTCTACATTCTCTACTATTGAAAAAAAAAGAAAAAATTGACGCAGAATTTTTTATAGCCGAAAAATCGAAATTTCGACTGAATCCAGAAACGCGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 192 175 132</canonical_bands>
                <polymorphic_bands>693 175 132</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCTAGGTTTCTCACTAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>GATCAACGACGATTAAAGCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCCTAGGTTTCTCACTAAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGGCGTTTTTTGGGAATTTCGGATTTTTTGTGAATTTTTTCGCAATATTATTCGGAAAATAGATAACTTTTAAAACATTTTAATGCAATAAAAACTTTTGGTCGGAGTCCCCCTTTAAGATTCTTCCTAGAATTCCCATCTTGTACAATCTTAGATTCATTAGCTTTAATCGTCGTTGATC</canonical_amplicon>
		<polymorphic_amplicon>GCCTAGGTTTCTCACTAAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGGCGTTTTTTGGGAATTTCGGATTTTTTGTGAATTTTTTCGCAATATTATTCGGAAAATAGATAACTTTTAAAACATTTTAATGCAATAAAAACTTTTGGTCGGAGTCCCCCTTTAAGATTCTTCCYAGAATTCCCATCTTGTACAATCTTAGATTCATTAGCTTTAATCGTCGTTGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28276</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>10520</contig_pos>
        <strand>+</strand>
        <context>ATTCCGAGTT[C/T]AAATGTAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACATCATGAGTATTCAAAAAAGTCCAAATATTTTGAACATTCCGAGTT</left_flank>
        <right_flank>AAATGTAGAAACATTTTGAATGACATCATTGCCATAAACACTCCAATAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTATCTCTTTCTCTCCGTGCCTTATTTTCTATTCTCTAGTTCCTTTTTTCTGGTTTTGTAGTCAAACATCCCGAGAGTGTTGACCTTATGGTCATAGTAGTCTTTTGGCCACGCCCCTCGGGTCTCTCTATTTCCATTCCATACCGCCCATATGTTATAAGGAATAAGAAATACCCACTGACCCTTACTATTAGATTCTGGTCTCAAGACAACCAACATCTCTTTAATTCTTTGTTGAAGCAAAGAAATATTCCTAACCTAATATGAAAATATTAGCTAAATTAGCTAAACAAATGACCGCTAGTTTTCTGAGAAATAATAGTTCAAGACGGGTTAAACAGGTTGGTGTTTTAGTCTTTTTTTTTGTTCTGATTCCTTAAAGAATCAGATTTTATCTCCGTTCTTTTCTTATTGAAATACTAGTTTCAATTGTTTTTCTGTTACCTTCAAACATCATGAGTATTCAAAAAAGTCCAAATATTTTGAACATTCCGAGTTCAAATGTAGAAACATTTTGAATGACATCATTGCCATAAACACTCCAATAGACTGCCATCCGAAACTTTGAGCTCATATATCTCGGTTTTTGTAGAAGATATCGAAAAATAATTAATTGATAGAATGCCCATCATAATATCAACAATATTTTGTTAGTTAACCAATTTTCGATATCTTTCACAGGAATCGAGTTAAATTGAATCAAAATTGACGGTTGGCATTCTTTTAGAGTATTTACGGTATTTCAAATTTATCGTAAATTTCCAACTTTTTCAGTAGGAAAATCTACTAGGGATACCCCAATATTTCCGACCCATTCAAAAAATCTTCTCCATATTTTTATACCCACTTCCTAATCGATCGTTCCAGAACCCGCAGATTCATACGCCTCCGGAGGGAAGTTCACCAGCCTCAACCAAGAACGCCTCAACGGAAAATATGACAGTGAGTTCGAAGAGTTTCATTCGTCATCAAAGCAGTCAATAGGAAAATGATCGGTTT</canonical>
            <polymorphic>TCTATCTCTTTCTCTCCGTGCCTTATTTTCTATTCTCTAGTTCCTTTTTTCTGGTTTTGTAGTCAAACATCCCGAGAGTGTTGACCTTATGGTCATAGTAGTCTTTTGGCCACGCCCCTCGGGTCTCTCTATTTCCATTCCATACCGCCCATATGTTATAAGGAATAAGAAATACCCACTGACCCTTACTATTAGATTCTGGTCTCAAGACAACCAACATCTCTTTAATTCTTTGTTGAAGCAAAGAAATATTCCTAACCTAATATGAAAATATTAGCTAAATTAGCTAAACAAATGACCGCTAGTTTTCTGAGAAATAATAGTTCAAGACGGGTTAAACAGGTTGGTGTTTTAGTCTTTTTTTTTGTTCTGATTCCTTAAAGAATCAGATTTTATCTCCGTTCTTTTCTTATTGAAATACTAGTTTCAATTGTTTTTCTGTTACCTTCAAACATCATGAGTATTCAAAAAAGTCCAAATATTTTGAACATTCCGAGTTYAAATGTAGAAACATTTTGAATGACATCATTGCCATAAACACTCCAATAGACTGCCATCCGAAACTTTGAGCTCATATATCTCGGTTTTTGTAGAAGATATCGAAAAATAATTAATTGATAGAATGCCCATCATAATATCAACAATATTTTGTTAGTTAACCAATTTTCGATATCTTTCACAGGAATCGAGTTAAATTGAATCAAAATTGACGGTTGGCATTCTTTTAGAGTATTTACGGTATTTCAAATTTATCGTAAATTTCCAACTTTTTCAGTAGGAAAATCTACTAGGGATACCCCAATATTTCCGACCCATTCAAAAAATCTTCTCCATATTTTTATACCCACTTCCTAATCGATCGTTCCAGAACCCGCAGATTCATACGCCTCCGGAGGGAAGTTCACCAGCCTCAACCAAGAACGCCTCAACGGAAAATATGACAGTGAGTTCGAAGAGTTTCATTCGTCATCAAAGCAGTCAATAGGAAAATGATCGGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATAATAGTTCAAGACGGGTTA</pcr_primer_p1>
		<pcr_primer_p2>GGCAGTCTATTGGAGTGTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GAAATAATAGTTCAAGACGGGTTAAACAGGTTGGTGTTTTAGTCTTTTTTTTTGTTCTGATTCCTTAAAGAATCAGATTTTATCTCCGTTCTTTTCTTATTGAAATACTAGTTTCAATTGTTTTTCTGTTACCTTCAAACATCATGAGTATTCAAAAAAGTCCAAATATTTTGAACATTCCGAGTTCAAATGTAGAAACATTTTGAATGACATCATTGCCATAAACACTCCAATAGACTGCC</canonical_amplicon>
		<polymorphic_amplicon>GAAATAATAGTTCAAGACGGGTTAAACAGGTTGGTGTTTTAGTCTTTTTTTTTGTTCTGATTCCTTAAAGAATCAGATTTTATCTCCGTTCTTTTCTTATTGAAATACTAGTTTCAATTGTTTTTCTGTTACCTTCAAACATCATGAGTATTCAAAAAAGTCCAAATATTTTGAACATTCCGAGTTYAAATGTAGAAACATTTTGAATGACATCATTGCCATAAACACTCCAATAGACTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28277</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>13916</contig_pos>
        <strand>+</strand>
        <context>AAATTTAGAT[C/T]CGACGAGAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGGGGACGGTGTGGTTGTCACCGAATACTAAAATCAAGAAATTTAGAT</left_flank>
        <right_flank>CGACGAGAATGCTTTTTCAATTACCAGGCAACTGTGTGAATGCTTTTCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGACATATCCTTGAAAATGCGTTTGATAGCCATTCTGGCTTTTGGCTTCGTTGGATTGGAACTTTCCACTGTCCAAACTTCAAATCTATAATCAGAGATGGGGTAGATCTGAAAAAAAAAATTTCCCCAGTACTTCAACAAGAAAAACGCACCGTTGTTCCTACACCTGACGCTGACGTACCAGCGATACTTGGGTTCTTTGTTTCTTTGATTGCATATCGTTCAATGTGAGCATTCAATTCGTGAACATTCTTCAGATATTCAACGTCATCTGCATCCCCATAAGACAGGACCTGGAATGATAAAATATTCAGAGAATAAGCACAAAACCATACTTCGAACGGTTGCATTTGATTATCCACACAAACAGATTGGATTTTCTCAACGTTTTGTGTATCGAACCTTATCGTCTGCTTCGTAGTATCCGAACACATAGATGGGAGGCGAACAATGGGGACGGTGTGGTTGTCACCGAATACTAAAATCAAGAAATTTAGATCCGACGAGAATGCTTTTTCAATTACCAGGCAACTGTGTGAATGCTTTTCTCGTCTCCTCAAAATCATCGTCATCATCTGAATCCCTGTCTTGTAAATGTCTTCGCATATCTCTCATTTCTAGCTCATCTTCAGCATCATTGATAATTTTCAGAGGCATAGCGCAGTTGGATCGAGCCAGAACTAAAACACGCCGAGCCTCCACATAGGCACCTGCCAATTCAACACATTGCGACCAACGAGCATACAGTGCTGCGCATCTGTAAATTTCGAAGACTATTTATCAATTTGGATTACGAAATCCGACTTAATCAGGGACTGTCGACTGATAGCGAACTGATAAATGTCGTGTGCATGACCAGCACTGTTATCAGCCATTATCTCCCATATTTTCAGCATTCTCTCGTCTTCCTTGTACTGTTCCAGAAATCCTGGTCTAAAAATCTTCAGATACAGTTGTTCAAACGATAAAATTCACACCTGCTGATTACTTTCCAAAGCAA</canonical>
            <polymorphic>GGACATATCCTTGAAAATGCGTTTGATAGCCATTCTGGCTTTTGGCTTCGTTGGATTGGAACTTTCCACTGTCCAAACTTCAAATCTATAATCAGAGATGGGGTAGATCTGAAAAAAAAAATTTCCCCAGTACTTCAACAAGAAAAACGCACCGTTGTTCCTACACCTGACGCTGACGTACCAGCGATACTTGGGTTCTTTGTTTCTTTGATTGCATATCGTTCAATGTGAGCATTCAATTCGTGAACATTCTTCAGATATTCAACGTCATCTGCATCCCCATAAGACAGGACCTGGAATGATAAAATATTCAGAGAATAAGCACAAAACCATACTTCGAACGGTTGCATTTGATTATCCACACAAACAGATTGGATTTTCTCAACGTTTTGTGTATCGAACCTTATCGTCTGCTTCGTAGTATCCGAACACATAGATGGGAGGCGAACAATGGGGACGGTGTGGTTGTCACCGAATACTAAAATCAAGAAATTTAGATYCGACGAGAATGCTTTTTCAATTACCAGGCAACTGTGTGAATGCTTTTCTCGTCTCCTCAAAATCATCGTCATCATCTGAATCCCTGTCTTGTAAATGTCTTCGCATATCTCTCATTTCTAGCTCATCTTCAGCATCATTGATAATTTTCAGAGGCATAGCGCAGTTGGATCGAGCCAGAACTAAAACACGCCGAGCCTCCACATAGGCACCTGCCAATTCAACACATTGCGACCAACGAGCATACAGTGCTGCGCATCTGTAAATTTCGAAGACTATTTATCAATTTGGATTACGAAATCCGACTTAATCAGGGACTGTCGACTGATAGCGAACTGATAAATGTCGTGTGCATGACCAGCACTGTTATCAGCCATTATCTCCCATATTTTCAGCATTCTCTCGTCTTCCTTGTACTGTTCCAGAAATCCTGGTCTAAAAATCTTCAGATACAGTTGTTCAAACGATAAAATTCACACCTGCTGATTACTTTCCAAAGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>391 333 171 105</canonical_bands>
                <polymorphic_bands>562 333 105</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>504 391 105</canonical_bands>
                <polymorphic_bands>895 105</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>151 146 145 113 94 76 75 73 57 54 16</canonical_bands>
                <polymorphic_bands>151 151 146 145 113 94 73 57 54 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCTCAACGTTTTGTGTATC</pcr_primer_p1>
		<pcr_primer_p2>TGAGCTAGAAATGAGAGATATGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCTCAACGTTTTGTGTATCGAACCTTATCGTCTGCTTCGTAGTATCCGAACACATAGATGGGAGGCGAACAATGGGGACGGTGTGGTTGTCACCGAATACTAAAATCAAGAAATTTAGATCCGACGAGAATGCTTTTTCAATTACCAGGCAACTGTGTGAATGCTTTTCTCGTCTCCTCAAAATCATCGTCATCATCTGAATCCCTGTCTTGTAAATGTCTTCGCATATCTCTCATTTCTAGCTCA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCTCAACGTTTTGTGTATCGAACCTTATCGTCTGCTTCGTAGTATCCGAACACATAGATGGGAGGCGAACAATGGGGACGGTGTGGTTGTCACCGAATACTAAAATCAAGAAATTTAGATYCGACGAGAATGCTTTTTCAATTACCAGGCAACTGTGTGAATGCTTTTCTCGTCTCCTCAAAATCATCGTCATCATCTGAATCCCTGTCTTGTAAATGTCTTCGCATATCTCTCATTTCTAGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28278</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>29113</contig_pos>
        <strand>+</strand>
        <context>GACTCTCCTG[A/G]AAGAGAGCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGAAAGTGACTAATCGGCGTGCGAATAAGTGATGAGGTTGACTCTCCTG</left_flank>
        <right_flank>AAGAGAGCAAGAGGACATAAAATAAAGGTGAACAAAGGCATCCAGGCATC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTTCTAATACAGGTTTTATGGTTATCTTGTTTCCTATAAGAAATCCTCTCTGAAAATTTGCGGCTTCGAATTTCTTACAACTAAAAAATTCATCGTACTTTGATCTGTTAATTCCATTACATGAAGTCAAAGTTTTTCTATTTTTTCTTGCTCCTTACCTCCTCCTCCTCTTTAACCTCATCAAATATTCAAGTCCTCCTCCTCCTCCTCCTTCTTTTCGTCCCATTCCTATTTTCTGTCCTTCATCCTTGTCCCCTCGTTTTTCCACAAACTTGTCCCATTTTTTTCCCGTTTTTCACCTTTTTGCCAGCCTTTTTCCCTCATATGTCAGTCGACATGCACAGGCATTTCGAAAGAAATGTAGAGTGTAGATGATAAAAAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGACTAAGAAAGTGACTAATCGGCGTGCGAATAAGTGATGAGGTTGACTCTCCTGGAAGAGAGCAAGAGGACATAAAATAAAGGTGAACAAAGGCATCCAGGCATCTCTAAAAAACGGAAGAGAAGAATGGAAGAAGAAAAAATCTGTTTACTAATTTCTTCCTCATTTTTTTTGGAAATGCATTTTTTCCCCTATTGGCCTTGTTTTACACAGTTTGATCAATCAAAAGAGAATGGAATTACCGAGAACTCTTTAATAGAAGGCCACCCTATACTTGCACTTTGAATTTGATTATCTCGGTTCCTACGAGAGATGTCAAAAACGTCTGATGAAAGATTACTGATATTATGAAAAACATTTCATCAATTAACAGGTTTTTAATATCTTTCATATATACCTATAGGTACCGAGATAATGGAGCTAAAAGTGCGAGTGTAGGGTGGCCTTCTATTAGAGTGTTAACGGTAACTTGTGATTTTTTTAGCAAACTTGGATAAGGGATAATTCATCTCAAGTAAGTGTTTGACCCCAAAAGTCTCCCTTGAAGCTAATTGA</canonical>
            <polymorphic>TCCTTCTAATACAGGTTTTATGGTTATCTTGTTTCCTATAAGAAATCCTCTCTGAAAATTTGCGGCTTCGAATTTCTTACAACTAAAAAATTCATCGTACTTTGATCTGTTAATTCCATTACATGAAGTCAAAGTTTTTCTATTTTTTCTTGCTCCTTACCTCCTCCTCCTCTTTAACCTCATCAAATATTCAAGTCCTCCTCCTCCTCCTCCTTCTTTTCGTCCCATTCCTATTTTCTGTCCTTCATCCTTGTCCCCTCGTTTTTCCACAAACTTGTCCCATTTTTTTCCCGTTTTTCACCTTTTTGCCAGCCTTTTTCCCTCATATGTCAGTCGACATGCACAGGCATTTCGAAAGAAATGTAGAGTGTAGATGATAAAAAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGACTAAGAAAGTGACTAATCGGCGTGCGAATAAGTGATGAGGTTGACTCTCCTGRAAGAGAGCAAGAGGACATAAAATAAAGGTGAACAAAGGCATCCAGGCATCTCTAAAAAACGGAAGAGAAGAATGGAAGAAGAAAAAATCTGTTTACTAATTTCTTCCTCATTTTTTTTGGAAATGCATTTTTTCCCCTATTGGCCTTGTTTTACACAGTTTGATCAATCAAAAGAGAATGGAATTACCGAGAACTCTTTAATAGAAGGCCACCCTATACTTGCACTTTGAATTTGATTATCTCGGTTCCTACGAGAGATGTCAAAAACGTCTGATGAAAGATTACTGATATTATGAAAAACATTTCATCAATTAACAGGTTTTTAATATCTTTCATATATACCTATAGGTACCGAGATAATGGAGCTAAAAGTGCGAGTGTAGGGTGGCCTTCTATTAGAGTGTTAACGGTAACTTGTGATTTTTTTAGCAAACTTGGATAAGGGATAATTCATCTCAAGTAAGTGTTTGACCCCAAAAGTCTCCCTTGAAGCTAATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>497 457 46</canonical_bands>
                <polymorphic_bands>543 457</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>497 457 46</canonical_bands>
                <polymorphic_bands>543 457</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTTCGAAAGAAATGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTTCTTCCATTCTTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CATTTCGAAAGAAATGTAGAGTGTAGATGATAAAAAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGACTAAGAAAGTGACTAATCGGCGTGCGAATAAGTGATGAGGTTGACTCTCCTGGAAGAGAGCAAGAGGACATAAAATAAAGGTGAACAAAGGCATCCAGGCATCTCTAAAAAACGGAAGAGAAGAATGGAAGAAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CATTTCGAAAGAAATGTAGAGTGTAGATGATAAAAAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGACTAAGAAAGTGACTAATCGGCGTGCGAATAAGTGATGAGGTTGACTCTCCTGRAAGAGAGCAAGAGGACATAAAATAAAGGTGAACAAAGGCATCCAGGCATCTCTAAAAAACGGAAGAGAAGAATGGAAGAAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28279</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>29330</contig_pos>
        <strand></strand>
        <context>ggccacccta[T/A]acttgcactt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATCAAAAGAGAATGGAATTACCGAGAACTCTTTAATAGAAGGCCACCCTA</left_flank>
        <right_flank>ACTTGCACTTTGAATTTGATTATCTCGGTTCCTACGAGAGATGTCAAAAA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGTCCCATTCCTATTTTCTGTCCTTCATCCTTGTCCCCTCGTTTTTCCACAAACTTGTCCCATTTTTTTCCCGTTTTTCACCTTTTTGCCAGCCTTTTTCCCTCATATGTCAGTCGACATGCACAGGCATTTCGAAAGAAATGTAGAGTGTAGATGATAAAAAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGACTAAGAAAGTGACTAATCGGCGTGCGAATAAGTGATGAGGTTGACTCTCCTGGAAGAGAGCAAGAGGACATAAAATAAAGGTGAACAAAGGCATCCAGGCATCTCTAAAAAACGGAAGAGAAGAATGGAAGAAGAAAAAATCTGTTTACTAATTTCTTCCTCATTTTTTTTGGAAATGCATTTTTTCCCCTATTGGCCTTGTTTTACACAGTTTGATCAATCAAAAGAGAATGGAATTACCGAGAACTCTTTAATAGAAGGCCACCCTATACTTGCACTTTGAATTTGATTATCTCGGTTCCTACGAGAGATGTCAAAAACGTCTGATGAAAGATTACTGATATTATGAAAAACATTTCATCAATTAACAGGTTTTTAATATCTTTCATATATACCTATAGGTACCGAGATAATGGAGCTAAAAGTGCGAGTGTAGGGTGGCCTTCTATTAGAGTGTTAACGGTAACTTGTGATTTTTTTAGCAAACTTGGATAAGGGATAATTCATCTCAAGTAAGTGTTTGACCCCAAAAGTCTCCCTTGAAGCTAATTGATTTAAAAACTACAAAATTCGATTATACGTATTTTCTGGTCAGTTATTAGTGAGTAATCAACTCTTACCAGAAGTTCAAAGTATAACAATACATTCCTAGAAATTAGAAAAAATTTACCGTAAACCCTGTAATAGAAGGGCACCCACACTGTCAAGTTTGAGCTCAACTATGTATCTCAATAATACGCAAAAACTCGAAAAAAACCTTTAACTACAAA</canonical>
            <polymorphic>TTTCGTCCCATTCCTATTTTCTGTCCTTCATCCTTGTCCCCTCGTTTTTCCACAAACTTGTCCCATTTTTTTCCCGTTTTTCACCTTTTTGCCAGCCTTTTTCCCTCATATGTCAGTCGACATGCACAGGCATTTCGAAAGAAATGTAGAGTGTAGATGATAAAAAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGACTAAGAAAGTGACTAATCGGCGTGCGAATAAGTGATGAGGTTGACTCTCCTGGAAGAGAGCAAGAGGACATAAAATAAAGGTGAACAAAGGCATCCAGGCATCTCTAAAAAACGGAAGAGAAGAATGGAAGAAGAAAAAATCTGTTTACTAATTTCTTCCTCATTTTTTTTGGAAATGCATTTTTTCCCCTATTGGCCTTGTTTTACACAGTTTGATCAATCAAAAGAGAATGGAATTACCGAGAACTCTTTAATAGAAGGCCACCCTAWACTTGCACTTTGAATTTGATTATCTCGGTTCCTACGAGAGATGTCAAAAACGTCTGATGAAAGATTACTGATATTATGAAAAACATTTCATCAATTAACAGGTTTTTAATATCTTTCATATATACCTATAGGTACCGAGATAATGGAGCTAAAAGTGCGAGTGTAGGGTGGCCTTCTATTAGAGTGTTAACGGTAACTTGTGATTTTTTTAGCAAACTTGGATAAGGGATAATTCATCTCAAGTAAGTGTTTGACCCCAAAAGTCTCCCTTGAAGCTAATTGATTTAAAAACTACAAAATTCGATTATACGTATTTTCTGGTCAGTTATTAGTGAGTAATCAACTCTTACCAGAAGTTCAAAGTATAACAATACATTCCTAGAAATTAGAAAAAATTTACCGTAAACCCTGTAATAGAAGGGCACCCACACTGTCAAGTTTGAGCTCAACTATGTATCTCAATAATACGCAAAAACTCGAAAAAAACCTTTAACTACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTGGCCTTGTTTTACACAG</pcr_primer_p1>
		<pcr_primer_p2>CCTTATCCAAGTTTGCTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>TATTGGCCTTGTTTTACACAGTTTGATCAATCAAAAGAGAATGGAATTACCGAGAACTCTTTAATAGAAGGCCACCCTATACTTGCACTTTGAATTTGATTATCTCGGTTCCTACGAGAGATGTCAAAAACGTCTGATGAAAGATTACTGATATTATGAAAAACATTTCATCAATTAACAGGTTTTTAATATCTTTCATATATACCTATAGGTACCGAGATAATGGAGCTAAAAGTGCGAGTGTAGGGTGGCCTTCTATTAGAGTGTTAACGGTAACTTGTGATTTTTTTAGCAAACTTGGATAAGG</canonical_amplicon>
		<polymorphic_amplicon>TATTGGCCTTGTTTTACACAGTTTGATCAATCAAAAGAGAATGGAATTACCGAGAACTCTTTAATAGAAGGCCACCCTAWACTTGCACTTTGAATTTGATTATCTCGGTTCCTACGAGAGATGTCAAAAACGTCTGATGAAAGATTACTGATATTATGAAAAACATTTCATCAATTAACAGGTTTTTAATATCTTTCATATATACCTATAGGTACCGAGATAATGGAGCTAAAAGTGCGAGTGTAGGGTGGCCTTCTATTAGAGTGTTAACGGTAACTTGTGATTTTTTTAGCAAACTTGGATAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28280</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>29443</contig_pos>
        <strand></strand>
        <context>tttttaatat[C/A]tttcatatat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GATTACTGATATTATGAAAAACATTTCATCAATTAACAGGTTTTTAATAT</left_flank>
        <right_flank>TTTCATATATACCTATAGGTACCGAGATAATGGAGCTAAAAGTGCGAGTG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTCGACATGCACAGGCATTTCGAAAGAAATGTAGAGTGTAGATGATAAAAAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGACTAAGAAAGTGACTAATCGGCGTGCGAATAAGTGATGAGGTTGACTCTCCTGGAAGAGAGCAAGAGGACATAAAATAAAGGTGAACAAAGGCATCCAGGCATCTCTAAAAAACGGAAGAGAAGAATGGAAGAAGAAAAAATCTGTTTACTAATTTCTTCCTCATTTTTTTTGGAAATGCATTTTTTCCCCTATTGGCCTTGTTTTACACAGTTTGATCAATCAAAAGAGAATGGAATTACCGAGAACTCTTTAATAGAAGGCCACCCTATACTTGCACTTTGAATTTGATTATCTCGGTTCCTACGAGAGATGTCAAAAACGTCTGATGAAAGATTACTGATATTATGAAAAACATTTCATCAATTAACAGGTTTTTAATATCTTTCATATATACCTATAGGTACCGAGATAATGGAGCTAAAAGTGCGAGTGTAGGGTGGCCTTCTATTAGAGTGTTAACGGTAACTTGTGATTTTTTTAGCAAACTTGGATAAGGGATAATTCATCTCAAGTAAGTGTTTGACCCCAAAAGTCTCCCTTGAAGCTAATTGATTTAAAAACTACAAAATTCGATTATACGTATTTTCTGGTCAGTTATTAGTGAGTAATCAACTCTTACCAGAAGTTCAAAGTATAACAATACATTCCTAGAAATTAGAAAAAATTTACCGTAAACCCTGTAATAGAAGGGCACCCACACTGTCAAGTTTGAGCTCAACTATGTATCTCAATAATACGCAAAAACTCGAAAAAAACCTTTAACTACAAAAGTTATCCAGTCATCGAAAATTTCATATTTTGTTAAACAAGAAGTGCGTATTTCATCAGATGTCTCATAAAATTCTTGATCTATCTCTTCCATTTTTCCGTTTTTCCTCTATT</canonical>
            <polymorphic>CAGTCGACATGCACAGGCATTTCGAAAGAAATGTAGAGTGTAGATGATAAAAAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGACTAAGAAAGTGACTAATCGGCGTGCGAATAAGTGATGAGGTTGACTCTCCTGGAAGAGAGCAAGAGGACATAAAATAAAGGTGAACAAAGGCATCCAGGCATCTCTAAAAAACGGAAGAGAAGAATGGAAGAAGAAAAAATCTGTTTACTAATTTCTTCCTCATTTTTTTTGGAAATGCATTTTTTCCCCTATTGGCCTTGTTTTACACAGTTTGATCAATCAAAAGAGAATGGAATTACCGAGAACTCTTTAATAGAAGGCCACCCTATACTTGCACTTTGAATTTGATTATCTCGGTTCCTACGAGAGATGTCAAAAACGTCTGATGAAAGATTACTGATATTATGAAAAACATTTCATCAATTAACAGGTTTTTAATATMTTTCATATATACCTATAGGTACCGAGATAATGGAGCTAAAAGTGCGAGTGTAGGGTGGCCTTCTATTAGAGTGTTAACGGTAACTTGTGATTTTTTTAGCAAACTTGGATAAGGGATAATTCATCTCAAGTAAGTGTTTGACCCCAAAAGTCTCCCTTGAAGCTAATTGATTTAAAAACTACAAAATTCGATTATACGTATTTTCTGGTCAGTTATTAGTGAGTAATCAACTCTTACCAGAAGTTCAAAGTATAACAATACATTCCTAGAAATTAGAAAAAATTTACCGTAAACCCTGTAATAGAAGGGCACCCACACTGTCAAGTTTGAGCTCAACTATGTATCTCAATAATACGCAAAAACTCGAAAAAAACCTTTAACTACAAAAGTTATCCAGTCATCGAAAATTTCATATTTTGTTAAACAAGAAGTGCGTATTTCATCAGATGTCTCATAAAATTCTTGATCTATCTCTTCCATTTTTCCGTTTTTCCTCTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTGGCCTTGTTTTACACAG</pcr_primer_p1>
		<pcr_primer_p2>CCTTATCCAAGTTTGCTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>TATTGGCCTTGTTTTACACAGTTTGATCAATCAAAAGAGAATGGAATTACCGAGAACTCTTTAATAGAAGGCCACCCTATACTTGCACTTTGAATTTGATTATCTCGGTTCCTACGAGAGATGTCAAAAACGTCTGATGAAAGATTACTGATATTATGAAAAACATTTCATCAATTAACAGGTTTTTAATATCTTTCATATATACCTATAGGTACCGAGATAATGGAGCTAAAAGTGCGAGTGTAGGGTGGCCTTCTATTAGAGTGTTAACGGTAACTTGTGATTTTTTTAGCAAACTTGGATAAGG</canonical_amplicon>
		<polymorphic_amplicon>TATTGGCCTTGTTTTACACAGTTTGATCAATCAAAAGAGAATGGAATTACCGAGAACTCTTTAATAGAAGGCCACCCTATACTTGCACTTTGAATTTGATTATCTCGGTTCCTACGAGAGATGTCAAAAACGTCTGATGAAAGATTACTGATATTATGAAAAACATTTCATCAATTAACAGGTTTTTAATATMTTTCATATATACCTATAGGTACCGAGATAATGGAGCTAAAAGTGCGAGTGTAGGGTGGCCTTCTATTAGAGTGTTAACGGTAACTTGTGATTTTTTTAGCAAACTTGGATAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28281</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>49386</contig_pos>
        <strand>+</strand>
        <context>ACGATGTTAC[A/G]GTTGCATCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAACTGTAAATATCGAAGTTTCCGTTTATCCGATCAAAAGACGATGTTAC</left_flank>
        <right_flank>GTTGCATCGAACCAAAACACAAGAAGTTGAAAGAGAGAGAGAGAGAAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGATTGTTATTTCATGAGTCCTGAAAAGAAAAAATGTAGAGAAAGCTTCATATGGACCACTGCATGTTAAATTCTACGACGACTAAACGTTCCTCCTTTCACCAATCCTCAGATGTCATATCGATGAAAAAGAGGAAGCGAAAAGAAAAATCGTAGAGAGATAGGGCGACAGCAGATTTTCACTTTTCCTGTTGAGAAATGCAGTGAAGAAGTGAGATAGATTTTGTAGGTGTAAAGTGAGCGAACGAATTACATCATGGTATTCGTTCCACCTGTGAACTACAATAACTGGAGAATATGAGAGTATCCTAAACGGTGTTTAGCCAACGTTACTACAGTAGACACCACTACACTGAAGCTGTCGTTGTGAGCATCAAAGATGGTGAGCTTTGCATGAAACACTTAAACTTGAACGAACTCAGAGTAACCTAAATGAACTTTCGGTCAGTAACTGTAAATATCGAAGTTTCCGTTTATCCGATCAAAAGACGATGTTACAGTTGCATCGAACCAAAACACAAGAAGTTGAAAGAGAGAGAGAGAGAAAACCTAAAAACGAAGATTAAACCTTTTACAAGGAAAGAAAGAACTAGCGTTTTCCAGTTTTACACACCTGTAAAAGACGCTGAACTCAACTAATTTCATAAAAATCCTTGTGGGATAAATTACTATTTTCGAAAACTCAAAACTACAGAAAACCGATAATCAGAAAATTGCAAAGAAATACTGTAAAGATTTCAGGACACTACCAAATTGTTGATGCTGCTAATATAATAAATTATAGGATCGAAATGTTATTCAATTTCCACTAATATCGTCGAATACTTGGGGCGCAATCAACATGCTTTTCCCCAAAGCTAGAATCTTTCTTCAGTCGTCTCTTTCAGTTTATTGTTGGTTCAGATGAACTGGTTATATTTGTAGAAAAAGCGAAAAATGACGAACACCCTTTCTGCATCTGTACAATACAGGAAAATGTGAGAAACAAAAAAAAGCGCT</canonical>
            <polymorphic>GAGATTGTTATTTCATGAGTCCTGAAAAGAAAAAATGTAGAGAAAGCTTCATATGGACCACTGCATGTTAAATTCTACGACGACTAAACGTTCCTCCTTTCACCAATCCTCAGATGTCATATCGATGAAAAAGAGGAAGCGAAAAGAAAAATCGTAGAGAGATAGGGCGACAGCAGATTTTCACTTTTCCTGTTGAGAAATGCAGTGAAGAAGTGAGATAGATTTTGTAGGTGTAAAGTGAGCGAACGAATTACATCATGGTATTCGTTCCACCTGTGAACTACAATAACTGGAGAATATGAGAGTATCCTAAACGGTGTTTAGCCAACGTTACTACAGTAGACACCACTACACTGAAGCTGTCGTTGTGAGCATCAAAGATGGTGAGCTTTGCATGAAACACTTAAACTTGAACGAACTCAGAGTAACCTAAATGAACTTTCGGTCAGTAACTGTAAATATCGAAGTTTCCGTTTATCCGATCAAAAGACGATGTTACRGTTGCATCGAACCAAAACACAAGAAGTTGAAAGAGAGAGAGAGAGAAAACCTAAAAACGAAGATTAAACCTTTTACAAGGAAAGAAAGAACTAGCGTTTTCCAGTTTTACACACCTGTAAAAGACGCTGAACTCAACTAATTTCATAAAAATCCTTGTGGGATAAATTACTATTTTCGAAAACTCAAAACTACAGAAAACCGATAATCAGAAAATTGCAAAGAAATACTGTAAAGATTTCAGGACACTACCAAATTGTTGATGCTGCTAATATAATAAATTATAGGATCGAAATGTTATTCAATTTCCACTAATATCGTCGAATACTTGGGGCGCAATCAACATGCTTTTCCCCAAAGCTAGAATCTTTCTTCAGTCGTCTCTTTCAGTTTATTGTTGGTTCAGATGAACTGGTTATATTTGTAGAAAAAGCGAAAAATGACGAACACCCTTTCTGCATCTGTACAATACAGGAAAATGTGAGAAACAAAAAAAAGCGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTGCATGAAACACTTAAACTT</pcr_primer_p1>
		<pcr_primer_p2>TAGTTGAGTTCAGCGTCTTTTAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTTTGCATGAAACACTTAAACTTGAACGAACTCAGAGTAACCTAAATGAACTTTCGGTCAGTAACTGTAAATATCGAAGTTTCCGTTTATCCGATCAAAAGACGATGTTACAGTTGCATCGAACCAAAACACAAGAAGTTGAAAGAGAGAGAGAGAGAAAACCTAAAAACGAAGATTAAACCTTTTACAAGGAAAGAAAGAACTAGCGTTTTCCAGTTTTACACACCTGTAAAAGACGCTGAACTCAACTA</canonical_amplicon>
		<polymorphic_amplicon>CTTTGCATGAAACACTTAAACTTGAACGAACTCAGAGTAACCTAAATGAACTTTCGGTCAGTAACTGTAAATATCGAAGTTTCCGTTTATCCGATCAAAAGACGATGTTACRGTTGCATCGAACCAAAACACAAGAAGTTGAAAGAGAGAGAGAGAGAAAACCTAAAAACGAAGATTAAACCTTTTACAAGGAAAGAAAGAACTAGCGTTTTCCAGTTTTACACACCTGTAAAAGACGCTGAACTCAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28282</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>89557</contig_pos>
        <strand>+</strand>
        <context>AAATTGAAGA[C/T]AAAACGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAGTTTAAAAATAGAAAATTCCTGAAACGCTAAACTCAGAAATTGAAGA</left_flank>
        <right_flank>AAAACGAAAAATGCTAAAAATGCTAAAAATTTAGAAGACGTCGTCCTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATATGATCCCTCGATAGCTGATTCTTTGACTGTAACGCCAACAAAACACCCAGACCATATGTTACTGTTGAGGAGAGAAAAGGAACAGATAGTAGAGTTTTTGGTTAGTAGTAACAGTTTTGAATAGAGAAAAAGGAGAGAAAGGAACCTGTTAGATTCGAATAGGGGAGAAAAAATTTAGAGAATCACAAAAAGGATCGGGAAAAAAAGAAAGAGGGCAACAAAGGAATATCAAGAATATGTTGCAAGATTGGGGAAGAGATACCTAGAAAGGCTTTCGACAAAAATATAAAAATGTCGGTTTTTGGGTTTTCATTTCTTTATGAATCGATTAAAGCTTTCCAGAAAAATAATACAACTTTCCAGAAAAATAATGTATCAGAAAGATGATGAAACTTTCGAAATCGGACAATTTCAATTTCGAAATTATTAGATTTGGGCAAAATTTTAGTTTAAAAATAGAAAATTCCTGAAACGCTAAACTCAGAAATTGAAGACAAAACGAAAAATGCTAAAAATGCTAAAAATTTAGAAGACGTCGTCCTGAAATTTAGATAACGTCATCGTCGGAAGACGTCACATCTTCTGAATCCACATCTTATGAAAAACTAGATCACCGTAGCCTAGAAATGAAACGACGGCCTAGAATTCCAAAAGTCAGACTGTGACCTAGAAAACTCAAAACGCTGTATTTCTAGGCCACCGAACTCAAATATCACAAAAATCCAAATCGAAGAGTTATGGAATTCTTGGCCACCATAATGAAAGAATTAATGATGGTTGTGGGGTATGGTGACCGAGAAATTTAACTGATGGCTTAGTATTTCAAAAAATTTCAAGTAGACATCCTTCAGTTTATATATTTTTTCTTATCTTTTCCTTATTTTTAATACTTTCTTATCTCAAAAAAATTGTTTCAATTTTTCCTGTGTGTGGGCTAGCACCTGATTTATGACGAAAGGTGAGCAAGAGAGATGATAAACAAGAACATCCATGAG</canonical>
            <polymorphic>TCATATGATCCCTCGATAGCTGATTCTTTGACTGTAACGCCAACAAAACACCCAGACCATATGTTACTGTTGAGGAGAGAAAAGGAACAGATAGTAGAGTTTTTGGTTAGTAGTAACAGTTTTGAATAGAGAAAAAGGAGAGAAAGGAACCTGTTAGATTCGAATAGGGGAGAAAAAATTTAGAGAATCACAAAAAGGATCGGGAAAAAAAGAAAGAGGGCAACAAAGGAATATCAAGAATATGTTGCAAGATTGGGGAAGAGATACCTAGAAAGGCTTTCGACAAAAATATAAAAATGTCGGTTTTTGGGTTTTCATTTCTTTATGAATCGATTAAAGCTTTCCAGAAAAATAATACAACTTTCCAGAAAAATAATGTATCAGAAAGATGATGAAACTTTCGAAATCGGACAATTTCAATTTCGAAATTATTAGATTTGGGCAAAATTTTAGTTTAAAAATAGAAAATTCCTGAAACGCTAAACTCAGAAATTGAAGAYAAAACGAAAAATGCTAAAAATGCTAAAAATTTAGAAGACGTCGTCCTGAAATTTAGATAACGTCATCGTCGGAAGACGTCACATCTTCTGAATCCACATCTTATGAAAAACTAGATCACCGTAGCCTAGAAATGAAACGACGGCCTAGAATTCCAAAAGTCAGACTGTGACCTAGAAAACTCAAAACGCTGTATTTCTAGGCCACCGAACTCAAATATCACAAAAATCCAAATCGAAGAGTTATGGAATTCTTGGCCACCATAATGAAAGAATTAATGATGGTTGTGGGGTATGGTGACCGAGAAATTTAACTGATGGCTTAGTATTTCAAAAAATTTCAAGTAGACATCCTTCAGTTTATATATTTTTTCTTATCTTTTCCTTATTTTTAATACTTTCTTATCTCAAAAAAATTGTTTCAATTTTTCCTGTGTGTGGGCTAGCACCTGATTTATGACGAAAGGTGAGCAAGAGAGATGATAAACAAGAACATCCATGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGGGCAAAATTTTAGTTTA</pcr_primer_p1>
		<pcr_primer_p2>TTTGAGTTTTCTAGGTCACAGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTGGGCAAAATTTTAGTTTAAAAATAGAAAATTCCTGAAACGCTAAACTCAGAAATTGAAGACAAAACGAAAAATGCTAAAAATGCTAAAAATTTAGAAGACGTCGTCCTGAAATTTAGATAACGTCATCGTCGGAAGACGTCACATCTTCTGAATCCACATCTTATGAAAAACTAGATCACCGTAGCCTAGAAATGAAACGACGGCCTAGAATTCCAAAAGTCAGACTGTGACCTAGAAAACTCAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTGGGCAAAATTTTAGTTTAAAAATAGAAAATTCCTGAAACGCTAAACTCAGAAATTGAAGAYAAAACGAAAAATGCTAAAAATGCTAAAAATTTAGAAGACGTCGTCCTGAAATTTAGATAACGTCATCGTCGGAAGACGTCACATCTTCTGAATCCACATCTTATGAAAAACTAGATCACCGTAGCCTAGAAATGAAACGACGGCCTAGAATTCCAAAAGTCAGACTGTGACCTAGAAAACTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28283</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>90967</contig_pos>
        <strand></strand>
        <context>gcgatatcaa[C/A]aatctgcaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GACTTGCACACTTTGAGCTCAATTATCTCAGCTCCCACAAGCGATATCAA</left_flank>
        <right_flank>AATCTGCAAACTACATAAATGTTGCTGATGTTATGATGAACATTTTATTA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTTTTAAAAGTCTTTGCTTTTTGAAAAAAACTCCGGCTCTCTTTTTTTCGGTTTCCTAAAATTTAGACTCATAAAATTTAATTGAGTTGCTAATTTGAAAAAAACGCTCTATTAACAAATCACCGACCATCTGATAGTGGAAAAAGTGAAAACATGAAAGTGATAAGAAGATAAAAAGGGCAAATCACAAGATGAAAAAGGAGTGGAGAAAGGAGGAGATGTGGTTTCTGATGAACGGATATTAGGGTCAACGAGACGGATTTCCAAGATTTCAAAAACATTTTTTTAGTCTTGAGATTTTATGAGCATCTACGGAAAACCAGCTAAAAAACGGCTCTGTTCAAACATTTGCCCAGATTAGAGATTTCGGAAGCAAGTGTGCTCAGCTGAAACACTATTGGGCTACATTTATTCCAGATTGGTCTCGAATATTGCTCATAAAATTAGACTTGCACACTTTGAGCTCAATTATCTCAGCTCCCACAAGCGATATCAACAATCTGCAAACTACATAAATGTTGCTGATGTTATGATGAACATTTTATTAATTAAAAATTGTTGGATATCTTTCGTAGGAACTGAGATAATTAAGCTCAAAATGTAAGCTCCTCTTTTTGAGCCTTCTAGTCTTAAGCTCACTTGCAAGAAACATAGCTTCTTTCAAACTTTACATATTTGGGCGTTTTTCTGGGACACGTTCTTTTCTAGCTGAGAGCTGAATAGATTTGTAGGAAAGTTTCAAAAGCTCGCCAAAAACTGAACTTCCCAGAGAAGAATATCTATTTCTGTACCAAATAAAACCTAAAGAAAAATACAAAAATCGGTAGAGAACTCTATTAAAAAAACCACGCTCGGTGTGGTTGTGAGCCTTATATCCTACCCGCCGGAGAACCGCCGACTGTGTAAATATTTGGTAGAAAAACGAACCTTTACGGGGTGATCGGAAGGAAAAAGTGAAAATTGGGTTGGAAATTGGCGACGAAAAAACATGGATTCG</canonical>
            <polymorphic>AAACTTTTAAAAGTCTTTGCTTTTTGAAAAAAACTCCGGCTCTCTTTTTTTCGGTTTCCTAAAATTTAGACTCATAAAATTTAATTGAGTTGCTAATTTGAAAAAAACGCTCTATTAACAAATCACCGACCATCTGATAGTGGAAAAAGTGAAAACATGAAAGTGATAAGAAGATAAAAAGGGCAAATCACAAGATGAAAAAGGAGTGGAGAAAGGAGGAGATGTGGTTTCTGATGAACGGATATTAGGGTCAACGAGACGGATTTCCAAGATTTCAAAAACATTTTTTTAGTCTTGAGATTTTATGAGCATCTACGGAAAACCAGCTAAAAAACGGCTCTGTTCAAACATTTGCCCAGATTAGAGATTTCGGAAGCAAGTGTGCTCAGCTGAAACACTATTGGGCTACATTTATTCCAGATTGGTCTCGAATATTGCTCATAAAATTAGACTTGCACACTTTGAGCTCAATTATCTCAGCTCCCACAAGCGATATCAAMAATCTGCAAACTACATAAATGTTGCTGATGTTATGATGAACATTTTATTAATTAAAAATTGTTGGATATCTTTCGTAGGAACTGAGATAATTAAGCTCAAAATGTAAGCTCCTCTTTTTGAGCCTTCTAGTCTTAAGCTCACTTGCAAGAAACATAGCTTCTTTCAAACTTTACATATTTGGGCGTTTTTCTGGGACACGTTCTTTTCTAGCTGAGAGCTGAATAGATTTGTAGGAAAGTTTCAAAAGCTCGCCAAAAACTGAACTTCCCAGAGAAGAATATCTATTTCTGTACCAAATAAAACCTAAAGAAAAATACAAAAATCGGTAGAGAACTCTATTAAAAAAACCACGCTCGGTGTGGTTGTGAGCCTTATATCCTACCCGCCGGAGAACCGCCGACTGTGTAAATATTTGGTAGAAAAACGAACCTTTACGGGGTGATCGGAAGGAAAAAGTGAAAATTGGGTTGGAAATTGGCGACGAAAAAACATGGATTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACACTATTGGGCTACATTT</pcr_primer_p1>
		<pcr_primer_p2>AGCTTAAGACTAGAAGGCTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAACACTATTGGGCTACATTTATTCCAGATTGGTCTCGAATATTGCTCATAAAATTAGACTTGCACACTTTGAGCTCAATTATCTCAGCTCCCACAAGCGATATCAACAATCTGCAAACTACATAAATGTTGCTGATGTTATGATGAACATTTTATTAATTAAAAATTGTTGGATATCTTTCGTAGGAACTGAGATAATTAAGCTCAAAATGTAAGCTCCTCTTTTTGAGCCTTCTAGTCTTAAGCT</canonical_amplicon>
		<polymorphic_amplicon>GAAACACTATTGGGCTACATTTATTCCAGATTGGTCTCGAATATTGCTCATAAAATTAGACTTGCACACTTTGAGCTCAATTATCTCAGCTCCCACAAGCGATATCAAMAATCTGCAAACTACATAAATGTTGCTGATGTTATGATGAACATTTTATTAATTAAAAATTGTTGGATATCTTTCGTAGGAACTGAGATAATTAAGCTCAAAATGTAAGCTCCTCTTTTTGAGCCTTCTAGTCTTAAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28284</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>106558</contig_pos>
        <strand>+</strand>
        <context>CCTCGCAAGG[A/G]TCTCGTTCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGAGGGCTCCTGCATGTGATTGATGGATGAGCACACGAACCTCGCAAGG</left_flank>
        <right_flank>TCTCGTTCAGAGAAATTCTGAAAAGGCTTGTTTGCGAAAAACGATCTAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCTGGAGCATTCATTGAGTATTGTCCAGGAACTGGTCCTCCACGGAATTGATGAAAATCTCCAGCTTCAAAGGATCTTGGGCCTCCTCCTGGAGTAATTGCTCCTCCATACGATCTCGGCCCACCGGGTGGGCCTTGTCCTCCACGGGGGGGAGCTGGTCCACGATTGTTTTGTGGTCCTCCACCCGAAACGTTTCCGGGGAAACCTCCATATTCGGAGATGTTGGACGGATCGTAATGGAAACTTGGAAGATATGGAGTCGCGGATCCTTTGATTGGAATCTCCTTGAGCTCTTTCATGACTTCCTCGATTATAGCCAGAACATTTTTCTGTTCTCCAGATGTTATGAGAACACGATCTGTGGATCCAGGGGCACATCCAGTGAAAATCTTCAAACGTGCAGAGCACTTTTCACGGAGTTCCTTGATTTTAGTTCCGTTTCGACCGATGAGGGCTCCTGCATGTGATTGATGGATGAGCACACGAACCTCGCAAGGGTCTCGTTCAGAGAAATTCTGAAAAGGCTTGTTTGCGAAAAACGATCTAACAATTTGAAAATAGAAGCTGAATAAAATGTCCTGACAGTTGCCTAGAACATACTTACATCTTCAAGACGAGGAAGAACATCCTTCAAAATGTTGAGGACTGTTTTCTCATCGGCGGTGACGGTGCAAACACTGAAATTACGACTTTGAGGGAAAGAACAATAAAAATCAAGGGTAATGTTGCAATGGGACCAAACATGGAATATTTTAAAAAGCTGTTCAATATACAATTAACTCGATAGAGAATATGGGATCTGATCAGAGTGGGACGTGTGATCGGGTAGGAGATGGTGAAGGGCTGATGGACTTTGGCTTATTTACCGTTCAGGGGTATTCGAGTCGGGGACTTGGACATGGGCGTTGAACTGAAAATTAAATCGGGGTGAGGAGACGGGTCTCTATCGGGTCATGAAGGCATAGTAATAATAAAAATTTGAAACGAATTTTCGATTT</canonical>
            <polymorphic>AACCTGGAGCATTCATTGAGTATTGTCCAGGAACTGGTCCTCCACGGAATTGATGAAAATCTCCAGCTTCAAAGGATCTTGGGCCTCCTCCTGGAGTAATTGCTCCTCCATACGATCTCGGCCCACCGGGTGGGCCTTGTCCTCCACGGGGGGGAGCTGGTCCACGATTGTTTTGTGGTCCTCCACCCGAAACGTTTCCGGGGAAACCTCCATATTCGGAGATGTTGGACGGATCGTAATGGAAACTTGGAAGATATGGAGTCGCGGATCCTTTGATTGGAATCTCCTTGAGCTCTTTCATGACTTCCTCGATTATAGCCAGAACATTTTTCTGTTCTCCAGATGTTATGAGAACACGATCTGTGGATCCAGGGGCACATCCAGTGAAAATCTTCAAACGTGCAGAGCACTTTTCACGGAGTTCCTTGATTTTAGTTCCGTTTCGACCGATGAGGGCTCCTGCATGTGATTGATGGATGAGCACACGAACCTCGCAAGGRTCTCGTTCAGAGAAATTCTGAAAAGGCTTGTTTGCGAAAAACGATCTAACAATTTGAAAATAGAAGCTGAATAAAATGTCCTGACAGTTGCCTAGAACATACTTACATCTTCAAGACGAGGAAGAACATCCTTCAAAATGTTGAGGACTGTTTTCTCATCGGCGGTGACGGTGCAAACACTGAAATTACGACTTTGAGGGAAAGAACAATAAAAATCAAGGGTAATGTTGCAATGGGACCAAACATGGAATATTTTAAAAAGCTGTTCAATATACAATTAACTCGATAGAGAATATGGGATCTGATCAGAGTGGGACGTGTGATCGGGTAGGAGATGGTGAAGGGCTGATGGACTTTGGCTTATTTACCGTTCAGGGGTATTCGAGTCGGGGACTTGGACATGGGCGTTGAACTGAAAATTAAATCGGGGTGAGGAGACGGGTCTCTATCGGGTCATGAAGGCATAGTAATAATAAAAATTTGAAACGAATTTTCGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>378 220 129 126 57 39 33 18</canonical_bands>
                <polymorphic_bands>598 129 126 57 39 33 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATTATAGCCAGAACATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAATTGTTAGATCGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGATTATAGCCAGAACATTTTTCTGTTCTCCAGATGTTATGAGAACACGATCTGTGGATCCAGGGGCACATCCAGTGAAAATCTTCAAACGTGCAGAGCACTTTTCACGGAGTTCCTTGATTTTAGTTCCGTTTCGACCGATGAGGGCTCCTGCATGTGATTGATGGATGAGCACACGAACCTCGCAAGGGTCTCGTTCAGAGAAATTCTGAAAAGGCTTGTTTGCGAAAAACGATCTAACAATTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>CGATTATAGCCAGAACATTTTTCTGTTCTCCAGATGTTATGAGAACACGATCTGTGGATCCAGGGGCACATCCAGTGAAAATCTTCAAACGTGCAGAGCACTTTTCACGGAGTTCCTTGATTTTAGTTCCGTTTCGACCGATGAGGGCTCCTGCATGTGATTGATGGATGAGCACACGAACCTCGCAAGGRTCTCGTTCAGAGAAATTCTGAAAAGGCTTGTTTGCGAAAAACGATCTAACAATTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28285</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>108115</contig_pos>
        <strand>+</strand>
        <context>gaaaataatg[A/C]tatgaatatc</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTTCTACAATATTATTGCTCAATTTTCTAAAAATAAAAAGAAAATAATG</left_flank>
        <right_flank>TATGAATATCATCATAAATAAAAAAAATATTATACGATTATCCAAAAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTGTAATTAAATTAATAAAATCATGTAACTGCTGGAAAGCAGATGAATAATAAGCGATAGAAAACATTTAGTTGCAAGCAAAAATACCTATTGGATAAAATAAATACAAATTTTTGTCAATATTCGAAATGTTGTCTATATCGTTCATCAGTTCATTCATATGGAATTATTCCTGACATAAAAATGGGGGGGGGGGGGTTTGCTTAAACGTATTCATGTGTGTCATGAACCATCCAATGAACTTTAAATTATAAAAAAATCACTCAAAAAAACCATTCAGGAATAGGAAATACGTTGCTTGCTGCATTCAATCAAAAATCCAGCTAGAAATTAAAGGCGCAGATAATTTTTTGATGATTTTGACCCGAATACCGTACTCAAAAAAACGCGGTCTTTCATATATAAAATCGTTTGTTCGCAGACAGTCAAAACAAAATCTTTGATGTTTCTTCTACAATATTATTGCTCAATTTTCTAAAAATAAAAAGAAAATAATGTTATGAATATCATCATAAATAAAAAAAATATTATACGATTATCCAAAAATATTATCATCATTCTTATAATAAATAAAAAGTTGCGTCTCTTTGTTTCTCTATCTGTCAGTCTGTCCGCGAATTTTGAAAAGCTTGAAATTGAATAAAATTTGACGTGACCTTTTAAGAAGATTGAGTCGCGAAGCGACGAAAAAATAATAAAAAAAGGTCAAATCGCGCCGGAGGCGCACCAGCCAGCTGTTTGAAGCGCCGGAGGCGCGGCAAACAGGCTGGCAATTACAAAAAATATAAAATTGCTGATGAATATGTGCCAATCGGTACTCGATAATATATTTTCCAAGTGTCTGTTTCAATTAGAGCTCCTCAAAATAAAATTATATATTTTTTTTTGCTTAAAAAACGAGAGATCGTTTTTTGGAAATCGAGAGCCAATTAAATCCATAACCTCAATTTGTTCTTCGATTCAATGTGACCTAAAAATAGGAAGCTGATGAGAATTTC</canonical>
            <polymorphic>TGCTGTAATTAAATTAATAAAATCATGTAACTGCTGGAAAGCAGATGAATAATAAGCGATAGAAAACATTTAGTTGCAAGCAAAAATACCTATTGGATAAAATAAATACAAATTTTTGTCAATATTCGAAATGTTGTCTATATCGTTCATCAGTTCATTCATATGGAATTATTCCTGACATAAAAATGGGGGGGGGGGGGTTTGCTTAAACGTATTCATGTGTGTCATGAACCATCCAATGAACTTTAAATTATAAAAAAATCACTCAAAAAAACCATTCAGGAATAGGAAATACGTTGCTTGCTGCATTCAATCAAAAATCCAGCTAGAAATTAAAGGCGCAGATAATTTTTTGATGATTTTGACCCGAATACCGTACTCAAAAAAACGCGGTCTTTCATATATAAAATCGTTTGTTCGCAGACAGTCAAAACAAAATCTTTGATGTTTCTTCTACAATATTATTGCTCAATTTTCTAAAAATAAAAAGAAAATAATGMTATGAATATCATCATAAATAAAAAAAATATTATACGATTATCCAAAAATATTATCATCATTCTTATAATAAATAAAAAGTTGCGTCTCTTTGTTTCTCTATCTGTCAGTCTGTCCGCGAATTTTGAAAAGCTTGAAATTGAATAAAATTTGACGTGACCTTTTAAGAAGATTGAGTCGCGAAGCGACGAAAAAATAATAAAAAAAGGTCAAATCGCGCCGGAGGCGCACCAGCCAGCTGTTTGAAGCGCCGGAGGCGCGGCAAACAGGCTGGCAATTACAAAAAATATAAAATTGCTGATGAATATGTGCCAATCGGTACTCGATAATATATTTTCCAAGTGTCTGTTTCAATTAGAGCTCCTCAAAATAAAATTATATATTTTTTTTTGCTTAAAAAACGAGAGATCGTTTTTTGGAAATCGAGAGCCAATTAAATCCATAACCTCAATTTGTTCTTCGATTCAATGTGACCTAAAAATAGGAAGCTGATGAGAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCTTTGATGTTTCTTCTACAAT</pcr_primer_p1>
		<pcr_primer_p2>GCACATATTCATCAGCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>AAATCTTTGATGTTTCTTCTACAATATTATTGCTCAATTTTCTAAAAATAAAAAGAAAATAATGTTATGAATATCATCATAAATAAAAAAAATATTATACGATTATCCAAAAATATTATCATCATTCTTATAATAAATAAAAAGTTGCGTCTCTTTGTTTCTCTATCTGTCAGTCTGTCCGCGAATTTTGAAAAGCTTGAAATTGAATAAAATTTGACGTGACCTTTTAAGAAGATTGAGTCGCGAAGCGACGAAAAAATAATAAAAAAAGGTCAAATCGCGCCGGAGGCGCACCAGCCAGCTGTTTGAAGCGCCGGAGGCGCGGCAAACAGGCTGGCAATTACAAAAAATATAAAATTGCTGATGAATATGTGC</canonical_amplicon>
		<polymorphic_amplicon>AAATCTTTGATGTTTCTTCTACAATATTATTGCTCAATTTTCTAAAAATAAAAAGAAAATAATGMTATGAATATCATCATAAATAAAAAAAATATTATACGATTATCCAAAAATATTATCATCATTCTTATAATAAATAAAAAGTTGCGTCTCTTTGTTTCTCTATCTGTCAGTCTGTCCGCGAATTTTGAAAAGCTTGAAATTGAATAAAATTTGACGTGACCTTTTAAGAAGATTGAGTCGCGAAGCGACGAAAAAATAATAAAAAAAGGTCAAATCGCGCCGGAGGCGCACCAGCCAGCTGTTTGAAGCGCCGGAGGCGCGGCAAACAGGCTGGCAATTACAAAAAATATAAAATTGCTGATGAATATGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28286</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>109648</contig_pos>
        <strand>+</strand>
        <context>AGTGAGAAAT[C/T]TAGGCCACAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTGGGACGCGAACAGGGATGAAGATTTGAGTTCCCACTCAGTGAGAAAT</left_flank>
        <right_flank>TAGGCCACAGCTGCAGGACGCCATATTTCGATAGCAAAGTTTCTGGATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGCTTTCGAAATAATTAAATTCCAATCGGCAGATAGTGGAATAAAGAAAACAATTGGAATTATCCATGGAATATGTTTTTTTTCCATATCTTGTTCTGTTTTATTGGAAAAAGAACGGCTGTCATCCGATTTAATACCAGAAGAGATTGAATAATCGATTTGCATATTCTCATATGATTAATTAAAATTGGGATAAATTTGAAAAATATTAACGGGGTTGCAAAATATTCATGAGTCAGGGAACATATTGCAGTGGCGTACATAAAAAGGCGGGCGAAGAAAATATCAATAAGGAAAAGAATCAGACTCTAAATGTAAAAAGGGGGACTCCGAGACAAAACTTTTATCACATTAAAATTTTTTAAAGGTATGTATTTTCCTAATAATATTGCGACAATGGTTTGGAAAAAATCCGAAACCCCTGAAAACGCCGTTGAAAGAAAAAGGAGGTGGGACGCGAACAGGGATGAAGATTTGAGTTCCCACTCAGTGAGAAATCTAGGCCACAGCTGCAGGACGCCATATTTCGATAGCAAAGTTTCTGGATATTTGCCGATTTTATCTCCGGAACTGTTGGTCATTTAAAACATCCGTCACACAGCCGTGGCCTAGGGTTCTCACTGTACTGTAGTTTAAAACTTCGTCCATATTCGTCGCCTTTTTTTTAACGGCGCTTTAGGATTTCGTTTTTTTCTCAACTTTCTCCGAATAATACTGAAAAAAACACATACTTAACTTCAAACAATTTGATGCAATAAAGAGGTTTGGTCGGAGTCCCCTTTCTTTTAACATACCACAAAACAATCCGCCGAGAAAAGTAAAAAATAAGAGTTTTCCTTGTAGAAATTTCGGTTTTTAAACAAAACACTATGTATGATAGCCGCATTTAAATAGGCCCCAAATGAAAGATACACGAATTGAAACATGTATTTCAGAATTTCAACTGTTTCATCAAACGAATCATCGCAAGTGAAATGAATTGGATCGTTAGAATCAGAA</canonical>
            <polymorphic>CGGCTTTCGAAATAATTAAATTCCAATCGGCAGATAGTGGAATAAAGAAAACAATTGGAATTATCCATGGAATATGTTTTTTTTCCATATCTTGTTCTGTTTTATTGGAAAAAGAACGGCTGTCATCCGATTTAATACCAGAAGAGATTGAATAATCGATTTGCATATTCTCATATGATTAATTAAAATTGGGATAAATTTGAAAAATATTAACGGGGTTGCAAAATATTCATGAGTCAGGGAACATATTGCAGTGGCGTACATAAAAAGGCGGGCGAAGAAAATATCAATAAGGAAAAGAATCAGACTCTAAATGTAAAAAGGGGGACTCCGAGACAAAACTTTTATCACATTAAAATTTTTTAAAGGTATGTATTTTCCTAATAATATTGCGACAATGGTTTGGAAAAAATCCGAAACCCCTGAAAACGCCGTTGAAAGAAAAAGGAGGTGGGACGCGAACAGGGATGAAGATTTGAGTTCCCACTCAGTGAGAAATYTAGGCCACAGCTGCAGGACGCCATATTTCGATAGCAAAGTTTCTGGATATTTGCCGATTTTATCTCCGGAACTGTTGGTCATTTAAAACATCCGTCACACAGCCGTGGCCTAGGGTTCTCACTGTACTGTAGTTTAAAACTTCGTCCATATTCGTCGCCTTTTTTTTAACGGCGCTTTAGGATTTCGTTTTTTTCTCAACTTTCTCCGAATAATACTGAAAAAAACACATACTTAACTTCAAACAATTTGATGCAATAAAGAGGTTTGGTCGGAGTCCCCTTTCTTTTAACATACCACAAAACAATCCGCCGAGAAAAGTAAAAAATAAGAGTTTTCCTTGTAGAAATTTCGGTTTTTAAACAAAACACTATGTATGATAGCCGCATTTAAATAGGCCCCAAATGAAAGATACACGAATTGAAACATGTATTTCAGAATTTCAACTGTTTCATCAAACGAATCATCGCAAGTGAAATGAATTGGATCGTTAGAATCAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 390 110</canonical_bands>
                <polymorphic_bands>610 390</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAAATGTAAAAAGGGGGACTC</pcr_primer_p1>
		<pcr_primer_p2>AGATAAAATCGGCAAATATCC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CTAAATGTAAAAAGGGGGACTCCGAGACAAAACTTTTATCACATTAAAATTTTTTAAAGGTATGTATTTTCCTAATAATATTGCGACAATGGTTTGGAAAAAATCCGAAACCCCTGAAAACGCCGTTGAAAGAAAAAGGAGGTGGGACGCGAACAGGGATGAAGATTTGAGTTCCCACTCAGTGAGAAATCTAGGCCACAGCTGCAGGACGCCATATTTCGATAGCAAAGTTTCTGGATATTTGCCGATTTTATCT</canonical_amplicon>
		<polymorphic_amplicon>CTAAATGTAAAAAGGGGGACTCCGAGACAAAACTTTTATCACATTAAAATTTTTTAAAGGTATGTATTTTCCTAATAATATTGCGACAATGGTTTGGAAAAAATCCGAAACCCCTGAAAACGCCGTTGAAAGAAAAAGGAGGTGGGACGCGAACAGGGATGAAGATTTGAGTTCCCACTCAGTGAGAAATYTAGGCCACAGCTGCAGGACGCCATATTTCGATAGCAAAGTTTCTGGATATTTGCCGATTTTATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28287</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>109808</contig_pos>
        <strand>+</strand>
        <context>ATTCGTCGCC[C/T]TTTTTTTAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAGGGTTCTCACTGTACTGTAGTTTAAAACTTCGTCCATATTCGTCGCC</left_flank>
        <right_flank>TTTTTTTAACGGCGCTTTAGGATTTCGTTTTTTTCTCAACTTTCTCCGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCATATTCTCATATGATTAATTAAAATTGGGATAAATTTGAAAAATATTAACGGGGTTGCAAAATATTCATGAGTCAGGGAACATATTGCAGTGGCGTACATAAAAAGGCGGGCGAAGAAAATATCAATAAGGAAAAGAATCAGACTCTAAATGTAAAAAGGGGGACTCCGAGACAAAACTTTTATCACATTAAAATTTTTTAAAGGTATGTATTTTCCTAATAATATTGCGACAATGGTTTGGAAAAAATCCGAAACCCCTGAAAACGCCGTTGAAAGAAAAAGGAGGTGGGACGCGAACAGGGATGAAGATTTGAGTTCCCACTCAGTGAGAAATCTAGGCCACAGCTGCAGGACGCCATATTTCGATAGCAAAGTTTCTGGATATTTGCCGATTTTATCTCCGGAACTGTTGGTCATTTAAAACATCCGTCACACAGCCGTGGCCTAGGGTTCTCACTGTACTGTAGTTTAAAACTTCGTCCATATTCGTCGCCTTTTTTTTAACGGCGCTTTAGGATTTCGTTTTTTTCTCAACTTTCTCCGAATAATACTGAAAAAAACACATACTTAACTTCAAACAATTTGATGCAATAAAGAGGTTTGGTCGGAGTCCCCTTTCTTTTAACATACCACAAAACAATCCGCCGAGAAAAGTAAAAAATAAGAGTTTTCCTTGTAGAAATTTCGGTTTTTAAACAAAACACTATGTATGATAGCCGCATTTAAATAGGCCCCAAATGAAAGATACACGAATTGAAACATGTATTTCAGAATTTCAACTGTTTCATCAAACGAATCATCGCAAGTGAAATGAATTGGATCGTTAGAATCAGAAATATTTGGGACAAAAAATGTTTGCATTTTTGAGAAAAAAAAACTTGTTCTAGCTTGTGTAGCTCGTTCCAGAGATCCTATTTAATCATCAAAAATATCGCACATATATGGGGCTTAGGTCATAATTGAGTTTTTAGTTTCTTGAAGTATCAAAAATTGAG</canonical>
            <polymorphic>TTGCATATTCTCATATGATTAATTAAAATTGGGATAAATTTGAAAAATATTAACGGGGTTGCAAAATATTCATGAGTCAGGGAACATATTGCAGTGGCGTACATAAAAAGGCGGGCGAAGAAAATATCAATAAGGAAAAGAATCAGACTCTAAATGTAAAAAGGGGGACTCCGAGACAAAACTTTTATCACATTAAAATTTTTTAAAGGTATGTATTTTCCTAATAATATTGCGACAATGGTTTGGAAAAAATCCGAAACCCCTGAAAACGCCGTTGAAAGAAAAAGGAGGTGGGACGCGAACAGGGATGAAGATTTGAGTTCCCACTCAGTGAGAAATCTAGGCCACAGCTGCAGGACGCCATATTTCGATAGCAAAGTTTCTGGATATTTGCCGATTTTATCTCCGGAACTGTTGGTCATTTAAAACATCCGTCACACAGCCGTGGCCTAGGGTTCTCACTGTACTGTAGTTTAAAACTTCGTCCATATTCGTCGCCYTTTTTTTAACGGCGCTTTAGGATTTCGTTTTTTTCTCAACTTTCTCCGAATAATACTGAAAAAAACACATACTTAACTTCAAACAATTTGATGCAATAAAGAGGTTTGGTCGGAGTCCCCTTTCTTTTAACATACCACAAAACAATCCGCCGAGAAAAGTAAAAAATAAGAGTTTTCCTTGTAGAAATTTCGGTTTTTAAACAAAACACTATGTATGATAGCCGCATTTAAATAGGCCCCAAATGAAAGATACACGAATTGAAACATGTATTTCAGAATTTCAACTGTTTCATCAAACGAATCATCGCAAGTGAAATGAATTGGATCGTTAGAATCAGAAATATTTGGGACAAAAAATGTTTGCATTTTTGAGAAAAAAAAACTTGTTCTAGCTTGTGTAGCTCGTTCCAGAGATCCTATTTAATCATCAAAAATATCGCACATATATGGGGCTTAGGTCATAATTGAGTTTTTAGTTTCTTGAAGTATCAAAAATTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTTCGATAGCAAAGTTTCTG</pcr_primer_p1>
		<pcr_primer_p2>CTCTTTATTGCATCAAATTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATATTTCGATAGCAAAGTTTCTGGATATTTGCCGATTTTATCTCCGGAACTGTTGGTCATTTAAAACATCCGTCACACAGCCGTGGCCTAGGGTTCTCACTGTACTGTAGTTTAAAACTTCGTCCATATTCGTCGCCTTTTTTTTAACGGCGCTTTAGGATTTCGTTTTTTTCTCAACTTTCTCCGAATAATACTGAAAAAAACACATACTTAACTTCAAACAATTTGATGCAATAAAGAG</canonical_amplicon>
		<polymorphic_amplicon>ATATTTCGATAGCAAAGTTTCTGGATATTTGCCGATTTTATCTCCGGAACTGTTGGTCATTTAAAACATCCGTCACACAGCCGTGGCCTAGGGTTCTCACTGTACTGTAGTTTAAAACTTCGTCCATATTCGTCGCCYTTTTTTTAACGGCGCTTTAGGATTTCGTTTTTTTCTCAACTTTCTCCGAATAATACTGAAAAAAACACATACTTAACTTCAAACAATTTGATGCAATAAAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28288</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>109843</contig_pos>
        <strand></strand>
        <context>TCGTTTTTTT[C/T]TCAACTTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCATATTCGTCGCCTTTTTTTTAACGGCGCTTTAGGATTTCGTTTTTTT</left_flank>
        <right_flank>TCAACTTTCTCCGAATAATACTGAAAAAAACACATACTTAACTTCAAACA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTGAAAAATATTAACGGGGTTGCAAAATATTCATGAGTCAGGGAACATATTGCAGTGGCGTACATAAAAAGGCGGGCGAAGAAAATATCAATAAGGAAAAGAATCAGACTCTAAATGTAAAAAGGGGGACTCCGAGACAAAACTTTTATCACATTAAAATTTTTTAAAGGTATGTATTTTCCTAATAATATTGCGACAATGGTTTGGAAAAAATCCGAAACCCCTGAAAACGCCGTTGAAAGAAAAAGGAGGTGGGACGCGAACAGGGATGAAGATTTGAGTTCCCACTCAGTGAGAAATCTAGGCCACAGCTGCAGGACGCCATATTTCGATAGCAAAGTTTCTGGATATTTGCCGATTTTATCTCCGGAACTGTTGGTCATTTAAAACATCCGTCACACAGCCGTGGCCTAGGGTTCTCACTGTACTGTAGTTTAAAACTTCGTCCATATTCGTCGCCTTTTTTTTAACGGCGCTTTAGGATTTCGTTTTTTTCTCAACTTTCTCCGAATAATACTGAAAAAAACACATACTTAACTTCAAACAATTTGATGCAATAAAGAGGTTTGGTCGGAGTCCCCTTTCTTTTAACATACCACAAAACAATCCGCCGAGAAAAGTAAAAAATAAGAGTTTTCCTTGTAGAAATTTCGGTTTTTAAACAAAACACTATGTATGATAGCCGCATTTAAATAGGCCCCAAATGAAAGATACACGAATTGAAACATGTATTTCAGAATTTCAACTGTTTCATCAAACGAATCATCGCAAGTGAAATGAATTGGATCGTTAGAATCAGAAATATTTGGGACAAAAAATGTTTGCATTTTTGAGAAAAAAAAACTTGTTCTAGCTTGTGTAGCTCGTTCCAGAGATCCTATTTAATCATCAAAAATATCGCACATATATGGGGCTTAGGTCATAATTGAGTTTTTAGTTTCTTGAAGTATCAAAAATTGAGTTGCTGTTGCCGGCAAGCAGAAGTGTGATTTTTGA</canonical>
            <polymorphic>AAATTTGAAAAATATTAACGGGGTTGCAAAATATTCATGAGTCAGGGAACATATTGCAGTGGCGTACATAAAAAGGCGGGCGAAGAAAATATCAATAAGGAAAAGAATCAGACTCTAAATGTAAAAAGGGGGACTCCGAGACAAAACTTTTATCACATTAAAATTTTTTAAAGGTATGTATTTTCCTAATAATATTGCGACAATGGTTTGGAAAAAATCCGAAACCCCTGAAAACGCCGTTGAAAGAAAAAGGAGGTGGGACGCGAACAGGGATGAAGATTTGAGTTCCCACTCAGTGAGAAATCTAGGCCACAGCTGCAGGACGCCATATTTCGATAGCAAAGTTTCTGGATATTTGCCGATTTTATCTCCGGAACTGTTGGTCATTTAAAACATCCGTCACACAGCCGTGGCCTAGGGTTCTCACTGTACTGTAGTTTAAAACTTCGTCCATATTCGTCGCCTTTTTTTTAACGGCGCTTTAGGATTTCGTTTTTTTYTCAACTTTCTCCGAATAATACTGAAAAAAACACATACTTAACTTCAAACAATTTGATGCAATAAAGAGGTTTGGTCGGAGTCCCCTTTCTTTTAACATACCACAAAACAATCCGCCGAGAAAAGTAAAAAATAAGAGTTTTCCTTGTAGAAATTTCGGTTTTTAAACAAAACACTATGTATGATAGCCGCATTTAAATAGGCCCCAAATGAAAGATACACGAATTGAAACATGTATTTCAGAATTTCAACTGTTTCATCAAACGAATCATCGCAAGTGAAATGAATTGGATCGTTAGAATCAGAAATATTTGGGACAAAAAATGTTTGCATTTTTGAGAAAAAAAAACTTGTTCTAGCTTGTGTAGCTCGTTCCAGAGATCCTATTTAATCATCAAAAATATCGCACATATATGGGGCTTAGGTCATAATTGAGTTTTTAGTTTCTTGAAGTATCAAAAATTGAGTTGCTGTTGCCGGCAAGCAGAAGTGTGATTTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGGTTCTCACTGTACTGTAGTTT</pcr_primer_p1>
		<pcr_primer_p2>TTAAAAACCGAAATTTCTACAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGGGTTCTCACTGTACTGTAGTTTAAAACTTCGTCCATATTCGTCGCCTTTTTTTTAACGGCGCTTTAGGATTTCGTTTTTTTCTCAACTTTCTCCGAATAATACTGAAAAAAACACATACTTAACTTCAAACAATTTGATGCAATAAAGAGGTTTGGTCGGAGTCCCCTTTCTTTTAACATACCACAAAACAATCCGCCGAGAAAAGTAAAAAATAAGAGTTTTCCTTGTAGAAATTTCGGTTTTTAA</canonical_amplicon>
		<polymorphic_amplicon>AGGGTTCTCACTGTACTGTAGTTTAAAACTTCGTCCATATTCGTCGCCTTTTTTTTAACGGCGCTTTAGGATTTCGTTTTTTTYTCAACTTTCTCCGAATAATACTGAAAAAAACACATACTTAACTTCAAACAATTTGATGCAATAAAGAGGTTTGGTCGGAGTCCCCTTTCTTTTAACATACCACAAAACAATCCGCCGAGAAAAGTAAAAAATAAGAGTTTTCCTTGTAGAAATTTCGGTTTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28289</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>185603</contig_pos>
        <strand></strand>
        <context>gataaataat[A/T]tatcggttga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGAAAATTTTGTTAACTGATCATGTAATGTTGATATTATGATAAATAAT</left_flank>
        <right_flank>TATCGGTTGACATATTGTTCATATCATTTACAGAAAATGAGATATGTGGG</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACTGACTTAACAAATGGCTCGTAAAAGATGAAAAGAACAGAATTTACAAAATGTGTCCCCGCCAAAGACAAGTGCAAGTATAAACACAGAAATATGATGGGGGTAGATGGGGTAGATGACATGTGTCTCGACACTTCACAACATGGCTAATTAGTAGGAAAAAAATTATGTGTCTCAGTGAAAGGTTTAAGGATGTCATGGGTACGAAATTCCGATAGATCAGGTCGAGCTTGTACGATTTTCAGGGAACCTTTATAAAGTATAAAAGTTCGCTCCAGACCTATTGAAGTTTGACAATAACTTTGAAGTGCAAATACTTTAGACTTCACTTTTGGGCTCTGAAGAATCGGATGTGGCATTTCTGAATAACCATTACCGTATTTAACCCAATAGAAGCCCACCCACCCAAACTGTAAATTTTGAGCTCAATTATATCAGCTCCTGTGACAGAAAATTTTGTTAACTGATCATGTAATGTTGATATTATGATAAATAATATATCGGTTGACATATTGTTCATATCATTTACAGAAAATGAGATATGTGGGCTCAAAGTTGACGATTTGGGTGGCATTCTATCAGAGCAAATACGGTATTTTCTCCCTGGTAGGTCACACAAAAGTTTTTGATTATCGCTCTTTTCACTCCTAGAAATTCGATACCAACATGATTTTTTCTTCTTTCACCTTCTCTTCCTCTCCCCCCGTTTTTCATATTTTCTGCAAAAAGTTGTTCAAGTGAAGAACTCCAAAAAAATCTTCAGGAAGATTCAAGAAACCAATCTGCCAGGAAAAGCAATCTCATAAATCTGGAATTGAAAAAAACTTTGTCTTTTTGTGTTCGTTCTTCTTTTCCACTAAAAAAATAATCGTTTTCCAGAAGAGTCGGAGCATCCGTTGCCTCAAAGCACATCAACAAAAAGAGCACTTTAGATTCTCGTTGGCTCTTTTTGGTCGGCACCACCGGAAATGAGCAAAAGAGTACTCTTTTGGAGCATC</canonical>
            <polymorphic>TCACTGACTTAACAAATGGCTCGTAAAAGATGAAAAGAACAGAATTTACAAAATGTGTCCCCGCCAAAGACAAGTGCAAGTATAAACACAGAAATATGATGGGGGTAGATGGGGTAGATGACATGTGTCTCGACACTTCACAACATGGCTAATTAGTAGGAAAAAAATTATGTGTCTCAGTGAAAGGTTTAAGGATGTCATGGGTACGAAATTCCGATAGATCAGGTCGAGCTTGTACGATTTTCAGGGAACCTTTATAAAGTATAAAAGTTCGCTCCAGACCTATTGAAGTTTGACAATAACTTTGAAGTGCAAATACTTTAGACTTCACTTTTGGGCTCTGAAGAATCGGATGTGGCATTTCTGAATAACCATTACCGTATTTAACCCAATAGAAGCCCACCCACCCAAACTGTAAATTTTGAGCTCAATTATATCAGCTCCTGTGACAGAAAATTTTGTTAACTGATCATGTAATGTTGATATTATGATAAATAATWTATCGGTTGACATATTGTTCATATCATTTACAGAAAATGAGATATGTGGGCTCAAAGTTGACGATTTGGGTGGCATTCTATCAGAGCAAATACGGTATTTTCTCCCTGGTAGGTCACACAAAAGTTTTTGATTATCGCTCTTTTCACTCCTAGAAATTCGATACCAACATGATTTTTTCTTCTTTCACCTTCTCTTCCTCTCCCCCCGTTTTTCATATTTTCTGCAAAAAGTTGTTCAAGTGAAGAACTCCAAAAAAATCTTCAGGAAGATTCAAGAAACCAATCTGCCAGGAAAAGCAATCTCATAAATCTGGAATTGAAAAAAACTTTGTCTTTTTGTGTTCGTTCTTCTTTTCCACTAAAAAAATAATCGTTTTCCAGAAGAGTCGGAGCATCCGTTGCCTCAAAGCACATCAACAAAAAGAGCACTTTAGATTCTCGTTGGCTCTTTTTGGTCGGCACCACCGGAAATGAGCAAAAGAGTACTCTTTTGGAGCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATAACCATTACCGTATTTAACC</pcr_primer_p1>
		<pcr_primer_p2>ACCTACCAGGGAGAAAATACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAATAACCATTACCGTATTTAACCCAATAGAAGCCCACCCACCCAAACTGTAAATTTTGAGCTCAATTATATCAGCTCCTGTGACAGAAAATTTTGTTAACTGATCATGTAATGTTGATATTATGATAAATAATATATCGGTTGACATATTGTTCATATCATTTACAGAAAATGAGATATGTGGGCTCAAAGTTGACGATTTGGGTGGCATTCTATCAGAGCAAATACGGTATTTTCTCCCTGGTAGGT</canonical_amplicon>
		<polymorphic_amplicon>GAATAACCATTACCGTATTTAACCCAATAGAAGCCCACCCACCCAAACTGTAAATTTTGAGCTCAATTATATCAGCTCCTGTGACAGAAAATTTTGTTAACTGATCATGTAATGTTGATATTATGATAAATAATWTATCGGTTGACATATTGTTCATATCATTTACAGAAAATGAGATATGTGGGCTCAAAGTTGACGATTTGGGTGGCATTCTATCAGAGCAAATACGGTATTTTCTCCCTGGTAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28290</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>185751</contig_pos>
        <strand>+</strand>
        <context>CTCTTTTCAC[C/T]CCTAGAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCTCCCTGGTAGGTCACACAAAAGTTTTTGATTATCGCTCTTTTCAC</left_flank>
        <right_flank>CCTAGAAATTCGATACCAACATGATTTTTTCTTCTTTCACCTTCTCTTCC</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAATTAGTAGGAAAAAAATTATGTGTCTCAGTGAAAGGTTTAAGGATGTCATGGGTACGAAATTCCGATAGATCAGGTCGAGCTTGTACGATTTTCAGGGAACCTTTATAAAGTATAAAAGTTCGCTCCAGACCTATTGAAGTTTGACAATAACTTTGAAGTGCAAATACTTTAGACTTCACTTTTGGGCTCTGAAGAATCGGATGTGGCATTTCTGAATAACCATTACCGTATTTAACCCAATAGAAGCCCACCCACCCAAACTGTAAATTTTGAGCTCAATTATATCAGCTCCTGTGACAGAAAATTTTGTTAACTGATCATGTAATGTTGATATTATGATAAATAATATATCGGTTGACATATTGTTCATATCATTTACAGAAAATGAGATATGTGGGCTCAAAGTTGACGATTTGGGTGGCATTCTATCAGAGCAAATACGGTATTTTCTCCCTGGTAGGTCACACAAAAGTTTTTGATTATCGCTCTTTTCACTCCTAGAAATTCGATACCAACATGATTTTTTCTTCTTTCACCTTCTCTTCCTCTCCCCCCGTTTTTCATATTTTCTGCAAAAAGTTGTTCAAGTGAAGAACTCCAAAAAAATCTTCAGGAAGATTCAAGAAACCAATCTGCCAGGAAAAGCAATCTCATAAATCTGGAATTGAAAAAAACTTTGTCTTTTTGTGTTCGTTCTTCTTTTCCACTAAAAAAATAATCGTTTTCCAGAAGAGTCGGAGCATCCGTTGCCTCAAAGCACATCAACAAAAAGAGCACTTTAGATTCTCGTTGGCTCTTTTTGGTCGGCACCACCGGAAATGAGCAAAAGAGTACTCTTTTGGAGCATCTTTTCTGGGCTCTGTTTTCTTTCGTGTTGTTCATGTTCTATTTTCATGTTTGTTCAGTAATAAACAATTGATGAAGGGAAGAATCATTTTAAATTCATCGTCAACTCATTCTGATGAACATGCCGGTTTTCTACAGAAAAAAAGACAA</canonical>
            <polymorphic>CTAATTAGTAGGAAAAAAATTATGTGTCTCAGTGAAAGGTTTAAGGATGTCATGGGTACGAAATTCCGATAGATCAGGTCGAGCTTGTACGATTTTCAGGGAACCTTTATAAAGTATAAAAGTTCGCTCCAGACCTATTGAAGTTTGACAATAACTTTGAAGTGCAAATACTTTAGACTTCACTTTTGGGCTCTGAAGAATCGGATGTGGCATTTCTGAATAACCATTACCGTATTTAACCCAATAGAAGCCCACCCACCCAAACTGTAAATTTTGAGCTCAATTATATCAGCTCCTGTGACAGAAAATTTTGTTAACTGATCATGTAATGTTGATATTATGATAAATAATATATCGGTTGACATATTGTTCATATCATTTACAGAAAATGAGATATGTGGGCTCAAAGTTGACGATTTGGGTGGCATTCTATCAGAGCAAATACGGTATTTTCTCCCTGGTAGGTCACACAAAAGTTTTTGATTATCGCTCTTTTCACYCCTAGAAATTCGATACCAACATGATTTTTTCTTCTTTCACCTTCTCTTCCTCTCCCCCCGTTTTTCATATTTTCTGCAAAAAGTTGTTCAAGTGAAGAACTCCAAAAAAATCTTCAGGAAGATTCAAGAAACCAATCTGCCAGGAAAAGCAATCTCATAAATCTGGAATTGAAAAAAACTTTGTCTTTTTGTGTTCGTTCTTCTTTTCCACTAAAAAAATAATCGTTTTCCAGAAGAGTCGGAGCATCCGTTGCCTCAAAGCACATCAACAAAAAGAGCACTTTAGATTCTCGTTGGCTCTTTTTGGTCGGCACCACCGGAAATGAGCAAAAGAGTACTCTTTTGGAGCATCTTTTCTGGGCTCTGTTTTCTTTCGTGTTGTTCATGTTCTATTTTCATGTTTGTTCAGTAATAAACAATTGATGAAGGGAAGAATCATTTTAAATTCATCGTCAACTCATTCTGATGAACATGCCGGTTTTCTACAGAAAAAAAGACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTCTCCCTGGTAGGTCA</pcr_primer_p1>
		<pcr_primer_p2>ACGAACACAAAAAGACAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATTTTCTCCCTGGTAGGTCACACAAAAGTTTTTGATTATCGCTCTTTTCACTCCTAGAAATTCGATACCAACATGATTTTTTCTTCTTTCACCTTCTCTTCCTCTCCCCCCGTTTTTCATATTTTCTGCAAAAAGTTGTTCAAGTGAAGAACTCCAAAAAAATCTTCAGGAAGATTCAAGAAACCAATCTGCCAGGAAAAGCAATCTCATAAATCTGGAATTGAAAAAAACTTTGTCTTTTTGTGTTCGT</canonical_amplicon>
		<polymorphic_amplicon>TATTTTCTCCCTGGTAGGTCACACAAAAGTTTTTGATTATCGCTCTTTTCACYCCTAGAAATTCGATACCAACATGATTTTTTCTTCTTTCACCTTCTCTTCCTCTCCCCCCGTTTTTCATATTTTCTGCAAAAAGTTGTTCAAGTGAAGAACTCCAAAAAAATCTTCAGGAAGATTCAAGAAACCAATCTGCCAGGAAAAGCAATCTCATAAATCTGGAATTGAAAAAAACTTTGTCTTTTTGTGTTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28291</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>239646</contig_pos>
        <strand>+</strand>
        <context>GAKWYTWMMA[C/T]TGAGCACGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTAAAA</left_flank>
        <right_flank>TGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAATTTAGGTTACGGTAGTTGTCCTTTTGGGACTACGGCCACCGGCAATACTTTTCAGTTAAATACCTTTCCAACACCAAGATATTTGAAAATCCTAATTCTCATAGTATCTTGCCATATCCATCAAAATATATTGTAATATTTTTTTCTGAAAACATCGAACCAAATGTTTGATTTTTCAAAACTATTAGGAAACTGAGGAATTCCAGTATAATTCCAGTATGATTCCATTATAATTCCAGTAAAATTCTTGTATAAAATGTTTTCTGTACTTCAAAATATTGGAAGATTTGGGGATTCATCTCTTCCTCCCACACCCATAAGAATTTTGCAAATCTTTGTCAAAAAAGTATTTTCAATGACTTTTTCATCTTCTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTCCTTTTCTCTGAGATCTCTTTTTACACATTGCGACAGAGGTGCTCTAGAGTCGAGTACCCTCCTACTACTCAGTCCAAGAAAAACGAGATAGTACTGATAGACAAGAGTTCTAGGCACTTTGACAGTTTGCCAAAGTTCACAGATTGTCCCTTCAAAGAAGAGTGGCGGGAGGTCTTCGAAGAGAAGCGCCCCCGGAGAAGATACGTTAAGAGATAGTGAGTGAGAATCAAAGAGGGCGGATATAGAAGACATAGAACGGATGAAAACACGTTCGGGTGCACACGGAAGAAGAAGAAGAAGAAGCTCCGGAGGGAAATAAAAAGAAAGAAGATCGATTGCGAGGGAGGAAATGGGAGTGAGAAATATAGAGATAGGG</canonical>
            <polymorphic>TAAATTTAGGTTACGGTAGTTGTCCTTTTGGGACTACGGCCACCGGCAATACTTTTCAGTTAAATACCTTTCCAACACCAAGATATTTGAAAATCCTAATTCTCATAGTATCTTGCCATATCCATCAAAATATATTGTAATATTTTTTTCTGAAAACATCGAACCAAATGTTTGATTTTTCAAAACTATTAGGAAACTGAGGAATTCCAGTATAATTCCAGTATGATTCCATTATAATTCCAGTAAAATTCTTGTATAAAATGTTTTCTGTACTTCAAAATATTGGAAGATTTGGGGATTCATCTCTTCCTCCCACACCCATAAGAATTTTGCAAATCTTTGTCAAAAAAGTATTTTCAATGACTTTTTCATCTTCTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTAAAAYTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTCCTTTTCTCTGAGATCTCTTTTTACACATTGCGACAGAGGTGCTCTAGAGTCGAGTACCCTCCTACTACTCAGTCCAAGAAAAACGAGATAGTACTGATAGACAAGAGTTCTAGGCACTTTGACAGTTTGCCAAAGTTCACAGATTGTCCCTTCAAAGAAGAGTGGCGGGAGGTCTTCGAAGAGAAGCGCCCCCGGAGAAGATACGTTAAGAGATAGTGAGTGAGAATCAAAGAGGGCGGATATAGAAGACATAGAACGGATGAAAACACGTTCGGGTGCACACGGAAGAAGAAGAAGAAGAAGCTCCGGAGGGAAATAAAAAGAAAGAAGATCGATTGCGAGGGAGGAAATGGGAGTGAGAAATATAGAGATAGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>238 162 76 75 54 54 46 43 42 35 25 23 19 18 18 16 14 10 10 4 4 4 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>238 162 76 75 54 54 46 43 42 35 25 23 23 18 18 16 14 10 10 4 4 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTATTCTTCTCTTGCTCAACTG</pcr_primer_p1>
		<pcr_primer_p2>GAGCAACTCATATCTCTGTGTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTAAAAGTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTC</canonical_amplicon>
		<polymorphic_amplicon>CTTATTCTTCTCTTGCTCAACTGGCTCTCCATTGACGGTCTTTTGCGAGCAACGGGAGACTTTCTCTGACTCTGCGTCTCTTGATCTTTCTTGATCTCTAAGTGAGCACGACGAGAGACTAAAAYTGAGCACGACGAGAGACTAAATGGATCAGAGAGAGCATAAAGATATGGAGGACAAATGTGCACTCGGCGCTCTTCACGGTTTACAGTCCTCCCACACGGAGAGACACAGAGATATGAGTTGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28292</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>265672</contig_pos>
        <strand>+</strand>
        <context>AAGGGCACCT[C/T]TAATGGACGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTCATCTTTTGGGGAGAAACCGTGAAACCTGTATTAGAAGGGCACCT</left_flank>
        <right_flank>TAATGGACGGAAAAAAAAATAAAAGGGCCCCCTGTAATAAAAGGGTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTGGAATTTAGGCCGTCTATTTTGGAGTTTGTGAGTCCGATCAAATGGCATTTGGTGTTATTCTTCTTGAAGTTTGGGGAGATGTCCCGCCGCGTAGTCTTCCAAACACCATTCCCATTTGTCTTGCTGGTAACATATTTGTCTTGCTGGTAACATATTCCAAGAATCTCTGAATCTGAGAATGTCAGAGACTTCGAATTTCGAATTGACTGAATGTTGAATTTCAGAATTTGGACATTAGAGAACTTCAGATCTTTAGAATTTTAGAAGCTCAGAATCTCTGAATTCCGAAACTTTTAAATTTCAGATCTTCAGAATTTTAAGATAGTAAAAAGAAGTTTCAGAAAAACGAATGCCTCAGCTAGAGAGCAACCTCAAATTGCACGCTCTCCGAGTGGATAACAAGACAGGATACGTCAGGAGTATAAGACCAGCTCAGGTTTTTATAATTTCATCTTTTGGGGAGAAACCGTGAAACCTGTATTAGAAGGGCACCTTTAATGGACGGAAAAAAAAATAAAAGGGCCCCCTGTAATAAAAGGGTTTTCCTCAAAATTTGTTTATTCAAAATAATTACTTCCGTACGTTTTCGGTGAAAAATATCCCGGAAATTTCATATTTCCACAGAAAATTGTTGAAAAAGTTTTTTTGTTGGTAAAATTGATAGATTTTTAATATTGAACGAGAATTCGTCAAATTTTTTGATAAACATTTACAAGAAGAAAAACAGAAAAGCCCCCTCTAATTGTAGGGCCCTCCGGAGGAGCTTTTAAACAGTAGAAAGGGTTTCCTAATACAGGTTTTACGGTAATATATTTTCAGACCATAAAATGTAATGACACTAGAAAATATTACAACAAGATATGTTTCACTCGTCCTACTTGTTCGAAGTACTCTGCTGGAGGACTTCTGAGAAAAGAAAACGGAAAGCAGAAACTGATCGGAATAATGTATTATCACTCACCAGACTGCAAGGAAAATAATGCGGTATCAATTGA</canonical>
            <polymorphic>TATTGGAATTTAGGCCGTCTATTTTGGAGTTTGTGAGTCCGATCAAATGGCATTTGGTGTTATTCTTCTTGAAGTTTGGGGAGATGTCCCGCCGCGTAGTCTTCCAAACACCATTCCCATTTGTCTTGCTGGTAACATATTTGTCTTGCTGGTAACATATTCCAAGAATCTCTGAATCTGAGAATGTCAGAGACTTCGAATTTCGAATTGACTGAATGTTGAATTTCAGAATTTGGACATTAGAGAACTTCAGATCTTTAGAATTTTAGAAGCTCAGAATCTCTGAATTCCGAAACTTTTAAATTTCAGATCTTCAGAATTTTAAGATAGTAAAAAGAAGTTTCAGAAAAACGAATGCCTCAGCTAGAGAGCAACCTCAAATTGCACGCTCTCCGAGTGGATAACAAGACAGGATACGTCAGGAGTATAAGACCAGCTCAGGTTTTTATAATTTCATCTTTTGGGGAGAAACCGTGAAACCTGTATTAGAAGGGCACCTYTAATGGACGGAAAAAAAAATAAAAGGGCCCCCTGTAATAAAAGGGTTTTCCTCAAAATTTGTTTATTCAAAATAATTACTTCCGTACGTTTTCGGTGAAAAATATCCCGGAAATTTCATATTTCCACAGAAAATTGTTGAAAAAGTTTTTTTGTTGGTAAAATTGATAGATTTTTAATATTGAACGAGAATTCGTCAAATTTTTTGATAAACATTTACAAGAAGAAAAACAGAAAAGCCCCCTCTAATTGTAGGGCCCTCCGGAGGAGCTTTTAAACAGTAGAAAGGGTTTCCTAATACAGGTTTTACGGTAATATATTTTCAGACCATAAAATGTAATGACACTAGAAAATATTACAACAAGATATGTTTCACTCGTCCTACTTGTTCGAAGTACTCTGCTGGAGGACTTCTGAGAAAAGAAAACGGAAAGCAGAAACTGATCGGAATAATGTATTATCACTCACCAGACTGCAAGGAAAATAATGCGGTATCAATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>299 228 178 174 98 23</canonical_bands>
                <polymorphic_bands>352 299 228 98 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCATCTTTTGGGGAGAA</pcr_primer_p1>
		<pcr_primer_p2>GCTTTTCTGTTTTTCTTCTTGT</pcr_primer_p2>
		<pcr_amplicon_size>288</pcr_amplicon_size>
		<canonical_amplicon>ATTTCATCTTTTGGGGAGAAACCGTGAAACCTGTATTAGAAGGGCACCTTTAATGGACGGAAAAAAAAATAAAAGGGCCCCCTGTAATAAAAGGGTTTTCCTCAAAATTTGTTTATTCAAAATAATTACTTCCGTACGTTTTCGGTGAAAAATATCCCGGAAATTTCATATTTCCACAGAAAATTGTTGAAAAAGTTTTTTTGTTGGTAAAATTGATAGATTTTTAATATTGAACGAGAATTCGTCAAATTTTTTGATAAACATTTACAAGAAGAAAAACAGAAAAGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTCATCTTTTGGGGAGAAACCGTGAAACCTGTATTAGAAGGGCACCTYTAATGGACGGAAAAAAAAATAAAAGGGCCCCCTGTAATAAAAGGGTTTTCCTCAAAATTTGTTTATTCAAAATAATTACTTCCGTACGTTTTCGGTGAAAAATATCCCGGAAATTTCATATTTCCACAGAAAATTGTTGAAAAAGTTTTTTTGTTGGTAAAATTGATAGATTTTTAATATTGAACGAGAATTCGTCAAATTTTTTGATAAACATTTACAAGAAGAAAAACAGAAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28293</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>269339</contig_pos>
        <strand>+</strand>
        <context>ACATTGGATC[A/T]TGCGAATCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGTCAGCTGGTTGATAAAATCATTAATTATAGATGCGTTACATTGGATC</left_flank>
        <right_flank>TGCGAATCTGATAAACTCTCCAGTGGCCTCATTCTTATCGAAATGGGAAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACAGAAGACGAAGAACGTTCAAAGGAATGTGGGAGAGCTATAGACTGTTAGTTAAAACAATAAATTACAAAAACATTTTCTGAAACATTTTCAGCCAAAAGCCCTTCGAATGACGAGTTGTCTCCATGGAGTGTTCGCTTACAACTCAAACCATTTTTTGTTTCTGCATCTTTGATTTCGAAGCGACACGTAATGACATCAGGATTGGCTTTAATGGAGACAGAAGACAATGGAGCAACATGGAAATGGAAAATGGATGAAGCAGAAGTTGATTTGAAAACCTGTAAGGATGGGTAAGACAAATAGTTGTGTTTCTTCAATCCGATAAGTTTTTGAAGAGTGATGGAAGCTCCCACTGACTCAATCACAGTAGATTTAAAAGCATGCAGCAACCATTTTCTATGCCCTTGGATGCCCGGAATTCCAGTCAAATCGGTGCGAATGAAATAAGTCAGCTGGTTGATAAAATCATTAATTATAGATGCGTTACATTGGATCATGCGAATCTGATAAACTCTCCAGTGGCCTCATTCTTATCGAAATGGGAAGAGACATCCCCGATGATTCATCATATTTTACCCCAGTTTGTCTCCCTGGTACTATTGTGATGTTGAAGGCATCTTTAGTATCTCTATTCCAGATTCATCTGACGTGGTCGATGACGGTGAAGATCTTCAGGCTCATCAAGCATCCCATTTAAATTTTAAGCCAGTCATAAAAATTGTGTCCGCTAAGGTAAATATTTTTAGATTCTGAGTTCAACGATTGATTTTTTGGTCTTCCAAATTTCGAGAAGTAGTTCAATTGGACACCCAATTTGAGAAAAATATTAAAAGTCGACCAAAAAATTTCATGTCATTTTTGCATTAAAATACTACCAAAGTTATGTATTTCCATGATTACCACGAAAAAGTTCGAAAAAAAATCTGAAGTTTTCAAAAAACTTTTCGCGGTTTTTGGCCTTTATATTTTCGGAAACATTTGAATAAAGAAATTAAT</canonical>
            <polymorphic>GACAGAAGACGAAGAACGTTCAAAGGAATGTGGGAGAGCTATAGACTGTTAGTTAAAACAATAAATTACAAAAACATTTTCTGAAACATTTTCAGCCAAAAGCCCTTCGAATGACGAGTTGTCTCCATGGAGTGTTCGCTTACAACTCAAACCATTTTTTGTTTCTGCATCTTTGATTTCGAAGCGACACGTAATGACATCAGGATTGGCTTTAATGGAGACAGAAGACAATGGAGCAACATGGAAATGGAAAATGGATGAAGCAGAAGTTGATTTGAAAACCTGTAAGGATGGGTAAGACAAATAGTTGTGTTTCTTCAATCCGATAAGTTTTTGAAGAGTGATGGAAGCTCCCACTGACTCAATCACAGTAGATTTAAAAGCATGCAGCAACCATTTTCTATGCCCTTGGATGCCCGGAATTCCAGTCAAATCGGTGCGAATGAAATAAGTCAGCTGGTTGATAAAATCATTAATTATAGATGCGTTACATTGGATCWTGCGAATCTGATAAACTCTCCAGTGGCCTCATTCTTATCGAAATGGGAAGAGACATCCCCGATGATTCATCATATTTTACCCCAGTTTGTCTCCCTGGTACTATTGTGATGTTGAAGGCATCTTTAGTATCTCTATTCCAGATTCATCTGACGTGGTCGATGACGGTGAAGATCTTCAGGCTCATCAAGCATCCCATTTAAATTTTAAGCCAGTCATAAAAATTGTGTCCGCTAAGGTAAATATTTTTAGATTCTGAGTTCAACGATTGATTTTTTGGTCTTCCAAATTTCGAGAAGTAGTTCAATTGGACACCCAATTTGAGAAAAATATTAAAAGTCGACCAAAAAATTTCATGTCATTTTTGCATTAAAATACTACCAAAGTTATGTATTTCCATGATTACCACGAAAAAGTTCGAAAAAAAATCTGAAGTTTTCAAAAAACTTTTCGCGGTTTTTGGCCTTTATATTTTCGGAAACATTTGAATAAAGAAATTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>354 144 126 115 114 104 43</canonical_bands>
                <polymorphic_bands>469 144 126 114 104 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACTGACTCAATCACAGTAGA</pcr_primer_p1>
		<pcr_primer_p2>ATAGTACCAGGGAGACAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCACTGACTCAATCACAGTAGATTTAAAAGCATGCAGCAACCATTTTCTATGCCCTTGGATGCCCGGAATTCCAGTCAAATCGGTGCGAATGAAATAAGTCAGCTGGTTGATAAAATCATTAATTATAGATGCGTTACATTGGATCATGCGAATCTGATAAACTCTCCAGTGGCCTCATTCTTATCGAAATGGGAAGAGACATCCCCGATGATTCATCATATTTTACCCCAGTTTGTCTCCCTGGTACTAT</canonical_amplicon>
		<polymorphic_amplicon>CCACTGACTCAATCACAGTAGATTTAAAAGCATGCAGCAACCATTTTCTATGCCCTTGGATGCCCGGAATTCCAGTCAAATCGGTGCGAATGAAATAAGTCAGCTGGTTGATAAAATCATTAATTATAGATGCGTTACATTGGATCWTGCGAATCTGATAAACTCTCCAGTGGCCTCATTCTTATCGAAATGGGAAGAGACATCCCCGATGATTCATCATATTTTACCCCAGTTTGTCTCCCTGGTACTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28294</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>358190</contig_pos>
        <strand>+</strand>
        <context>TCAATTTTGA[A/C]CCTGCTTCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAGAAAGGTAAATGAGTTTAAAAAGAAAGTATGTTTTTCATCAATTTTGA</left_flank>
        <right_flank>CCTGCTTCTTTAAGAATTGGAAATCTTTCAGAAGAGTCATTTTGACCATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGGAGATATTTTTGAAGATCTTTGAGATTTAATACATTTTGGATGAGAATTGAAAACTACGTCGAAGAGTCAATGTTCGTTAGGCTCACTTTTGCAGCCATTGTGACCAGTGCCTCAATTCCTTTCGTATGGAATTTCGAGGTCGTCGCATCTGGAATCTCTGTCGTTGCCGGCCGAACTCTCGTCATGGTGGCGCCGTTGCCGGTGATAGTAAACACGGAAATTGATTGTTTCGACAGTTTGAATCTGAATAATTATTGTTTTGGAAAAAGAGAGAATTGGGTGAAATTGTAGGATTTAGGAGAGTATGAAGCGGTTTTGATAGGGAAAAAGTACCAATTCATCAATCTATTACATTAGGTTACCTGAGGAAACATCTCTTTCGTGATAGTACAAGACGACACATATTCCAATTAAGAGCGGAAATCGTCTAATTTCAAAAAACGCAGAAAGGTAAATGAGTTTAAAAAGAAAGTATGTTTTTCATCAATTTTGAACCTGCTTCTTTAAGAATTGGAAATCTTTCAGAAGAGTCATTTTGACCATTTGAAAAAAATTTTAGCCTAATTCGAGTATGTTATTTTTTAACTATTTCTATAGAGAATTTTCTACCAAAAACTTAATTTCTGATATTAATATCTTCCGAAATCCCATTTCAGGAAAGGTGAAGACGTCGTTTCTGTAAAGCTGAAACACTCTTATGAGAGTCCATTGCTTGCATTTCGAGCCTAATTATCCCAATTTTTAGAAGAGGTAACCAAAATCTGTCAACTGGCAAAATGTTCTTAATAATATAAGCAACATTTCATCAGTTGACATACTTTTGCTGTGAAATTGAGATAATTAAGCTCTAACAGTAAGTGTAAGTATTGGGTGGCCTTATGTTAGAATGTTTGCTGTATTCCTTCTCGAAAAATCGAAAAAAAAAATCTAGAACGGAGCAATGGATGAGGGTGTGAAATATATGAGAAGGATGATTGAGAGTGATGATAAAGAG</canonical>
            <polymorphic>TTTTGGAGATATTTTTGAAGATCTTTGAGATTTAATACATTTTGGATGAGAATTGAAAACTACGTCGAAGAGTCAATGTTCGTTAGGCTCACTTTTGCAGCCATTGTGACCAGTGCCTCAATTCCTTTCGTATGGAATTTCGAGGTCGTCGCATCTGGAATCTCTGTCGTTGCCGGCCGAACTCTCGTCATGGTGGCGCCGTTGCCGGTGATAGTAAACACGGAAATTGATTGTTTCGACAGTTTGAATCTGAATAATTATTGTTTTGGAAAAAGAGAGAATTGGGTGAAATTGTAGGATTTAGGAGAGTATGAAGCGGTTTTGATAGGGAAAAAGTACCAATTCATCAATCTATTACATTAGGTTACCTGAGGAAACATCTCTTTCGTGATAGTACAAGACGACACATATTCCAATTAAGAGCGGAAATCGTCTAATTTCAAAAAACGCAGAAAGGTAAATGAGTTTAAAAAGAAAGTATGTTTTTCATCAATTTTGAMCCTGCTTCTTTAAGAATTGGAAATCTTTCAGAAGAGTCATTTTGACCATTTGAAAAAAATTTTAGCCTAATTCGAGTATGTTATTTTTTAACTATTTCTATAGAGAATTTTCTACCAAAAACTTAATTTCTGATATTAATATCTTCCGAAATCCCATTTCAGGAAAGGTGAAGACGTCGTTTCTGTAAAGCTGAAACACTCTTATGAGAGTCCATTGCTTGCATTTCGAGCCTAATTATCCCAATTTTTAGAAGAGGTAACCAAAATCTGTCAACTGGCAAAATGTTCTTAATAATATAAGCAACATTTCATCAGTTGACATACTTTTGCTGTGAAATTGAGATAATTAAGCTCTAACAGTAAGTGTAAGTATTGGGTGGCCTTATGTTAGAATGTTTGCTGTATTCCTTCTCGAAAAATCGAAAAAAAAAATCTAGAACGGAGCAATGGATGAGGGTGTGAAATATATGAGAAGGATGATTGAGAGTGATGATAAAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGTGATAGTACAAGACGACAC</pcr_primer_p1>
		<pcr_primer_p2>TCAGAAATTAAGTTTTTGGTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCGTGATAGTACAAGACGACACATATTCCAATTAAGAGCGGAAATCGTCTAATTTCAAAAAACGCAGAAAGGTAAATGAGTTTAAAAAGAAAGTATGTTTTTCATCAATTTTGAACCTGCTTCTTTAAGAATTGGAAATCTTTCAGAAGAGTCATTTTGACCATTTGAAAAAAATTTTAGCCTAATTCGAGTATGTTATTTTTTAACTATTTCTATAGAGAATTTTCTACCAAAAACTTAATTTCTGA</canonical_amplicon>
		<polymorphic_amplicon>TCGTGATAGTACAAGACGACACATATTCCAATTAAGAGCGGAAATCGTCTAATTTCAAAAAACGCAGAAAGGTAAATGAGTTTAAAAAGAAAGTATGTTTTTCATCAATTTTGAMCCTGCTTCTTTAAGAATTGGAAATCTTTCAGAAGAGTCATTTTGACCATTTGAAAAAAATTTTAGCCTAATTCGAGTATGTTATTTTTTAACTATTTCTATAGAGAATTTTCTACCAAAAACTTAATTTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28295</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>361464</contig_pos>
        <strand></strand>
        <context>gattccattg[C/T]tagatatcaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAGGACCCCCATACGGTTAAGTTCAAGCTTAATTATCTAGATTCCATTG</left_flank>
        <right_flank>TAGATATCAAAAATATGTCAACCGACGAAACACTTCTGATATTATGATAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACGAGATACACTTTTGCATGAGACCCCTGCTCTCAATACTGAAATTTTTATGAGTTTCATCTGACTTAAGCATGACCAGGAACCCAGATTTCAGAATTTATGACATCATTCTGAAGTCTGGCTGCAATAAAAGTACATTGCGCCGTTGCTCACACTGAATCGATTCTTAAATTCAAAAAACAAAAAAACTTTCCAATGATATTAAACTGAATTCACTTAAATTAATAGGTAAATTGAAAGTGTGTTTTTATTCTATAAGAAGAAGGTAAATAGGTGGTACGAACATGGAGTGGAATGAAGTTTCCTCAAAGAGACTCATTCAACATTCCACGCAAGTCCTCTCTCTTTCTCTCTATCACATTCTATCGTTTTTTCTTGGTTTTTTACTAGTCGTTCGGGAACTTTTTTGAATTTCGTTTGAATCTGATTACCGTAGAACCTGTAATAGAAGGACCCCCATACGGTTAAGTTCAAGCTTAATTATCTAGATTCCATTGCTAGATATCAAAAATATGTCAACCGACGAAACACTTCTGATATTATGATAAACAATTTATCAGTTGACAATTTTTATACCTCTCGCAGGAACCGAGATAGATTTGCTCAAATTTATCAGTTAGCGGCCCTTCTTTTACAGGTTGTACGGTAGTTGGAATAGTGCGAAAGGGGAAGAATGAGTGAAAAAGAAAAGTTAGAATAATCTTTGGTCAAAAATTTTTGTTAACCCAAGAAGAAAAGCTTATTTCAGCAGTTTGTCCAATTTAGAAAACTTTTGCGAAAACTAAAAAAATTCCGCATTCGGTCACAAGACTCTAATTGGAAAGAAAACACATTTTTGGGAATAGTTCCCAATTTTTGGGCGGAAATTTTGAAAAGAAAGGAAAGAAGCCGAAAAGAAATTCAAAAAGATCAAACTTCCGGAACATGTCTGAAAGGAGATTACTGTGCCAGAAAAAAAAACCAATTTTTTAAAAGTGTTCGTGATTTGGTTCTGGAAT</canonical>
            <polymorphic>AAACGAGATACACTTTTGCATGAGACCCCTGCTCTCAATACTGAAATTTTTATGAGTTTCATCTGACTTAAGCATGACCAGGAACCCAGATTTCAGAATTTATGACATCATTCTGAAGTCTGGCTGCAATAAAAGTACATTGCGCCGTTGCTCACACTGAATCGATTCTTAAATTCAAAAAACAAAAAAACTTTCCAATGATATTAAACTGAATTCACTTAAATTAATAGGTAAATTGAAAGTGTGTTTTTATTCTATAAGAAGAAGGTAAATAGGTGGTACGAACATGGAGTGGAATGAAGTTTCCTCAAAGAGACTCATTCAACATTCCACGCAAGTCCTCTCTCTTTCTCTCTATCACATTCTATCGTTTTTTCTTGGTTTTTTACTAGTCGTTCGGGAACTTTTTTGAATTTCGTTTGAATCTGATTACCGTAGAACCTGTAATAGAAGGACCCCCATACGGTTAAGTTCAAGCTTAATTATCTAGATTCCATTGYTAGATATCAAAAATATGTCAACCGACGAAACACTTCTGATATTATGATAAACAATTTATCAGTTGACAATTTTTATACCTCTCGCAGGAACCGAGATAGATTTGCTCAAATTTATCAGTTAGCGGCCCTTCTTTTACAGGTTGTACGGTAGTTGGAATAGTGCGAAAGGGGAAGAATGAGTGAAAAAGAAAAGTTAGAATAATCTTTGGTCAAAAATTTTTGTTAACCCAAGAAGAAAAGCTTATTTCAGCAGTTTGTCCAATTTAGAAAACTTTTGCGAAAACTAAAAAAATTCCGCATTCGGTCACAAGACTCTAATTGGAAAGAAAACACATTTTTGGGAATAGTTCCCAATTTTTGGGCGGAAATTTTGAAAAGAAAGGAAAGAAGCCGAAAAGAAATTCAAAAAGATCAAACTTCCGGAACATGTCTGAAAGGAGATTACTGTGCCAGAAAAAAAAACCAATTTTTTAAAAGTGTTCGTGATTTGGTTCTGGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 389 98 13</canonical_bands>
                <polymorphic_bands>513 389 98</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAATTTCGTTTGAATCTGA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTCTTTTTCACTCATTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>TTGAATTTCGTTTGAATCTGATTACCGTAGAACCTGTAATAGAAGGACCCCCATACGGTTAAGTTCAAGCTTAATTATCTAGATTCCATTGCTAGATATCAAAAATATGTCAACCGACGAAACACTTCTGATATTATGATAAACAATTTATCAGTTGACAATTTTTATACCTCTCGCAGGAACCGAGATAGATTTGCTCAAATTTATCAGTTAGCGGCCCTTCTTTTACAGGTTGTACGGTAGTTGGAATAGTGCGAAAGGGGAAGAATGAGTGAAAAAGAAAAG</canonical_amplicon>
		<polymorphic_amplicon>TTGAATTTCGTTTGAATCTGATTACCGTAGAACCTGTAATAGAAGGACCCCCATACGGTTAAGTTCAAGCTTAATTATCTAGATTCCATTGYTAGATATCAAAAATATGTCAACCGACGAAACACTTCTGATATTATGATAAACAATTTATCAGTTGACAATTTTTATACCTCTCGCAGGAACCGAGATAGATTTGCTCAAATTTATCAGTTAGCGGCCCTTCTTTTACAGGTTGTACGGTAGTTGGAATAGTGCGAAAGGGGAAGAATGAGTGAAAAAGAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28297</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>428372</contig_pos>
        <strand></strand>
        <context>aaatgtttat[A/C]gtaatgtcaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCAGTTCCAGTAAGAGATATCAAAAACTGGTCAACTGATAAAATGTTTAT</left_flank>
        <right_flank>GTAATGTCAAAAATATTTTGTTTAGTTGACCAATTTTTGTTATATTTTGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGTTGTGTAATACAAATAATGGATTGCTCTGTTAGTGAAAAGCGATGGTTACTGTAGAAGCAGTCAGCTTAAAAACATCAAGAACATATTTAACACGGAAGGAAGGAAACTCATTTTCCGAAATACAGAAAAACGGAAACGGATCGAGGCAATTTTTTGTCGGAAAAATTCTCAATTCTCAGATTCCTGGAAAATACCGTAAAACCTATTTACAGCTGTGAGAGGTATTTAGTTAAAGCGAAACCTTTTGATATTTAACACAACCGAAATTTTTTAAATCGGAAAATTTCAAAATTTCTAGAATAATTTTTTTCTAATTGGATTTCTTGAGCAAAGTTTCAAATAAATGAACAGTGTGCTCCAAAATATACATGTTTCAAAAACCTACATACCGTAAACACTCTAATAGAGTGCCACCCAAACCTTCAAATTCCAGCACATGTATCTCAGTTCCAGTAAGAGATATCAAAAACTGGTCAACTGATAAAATGTTTATAGTAATGTCAAAAATATTTTGTTTAGTTGACCAATTTTTGTTATATTTTGCAGGGAATGAGATATATGGGTTCAAAGTTGACAGACACTCTACTAGAGTGTTTACGGTAACTTTGGTCTGAGCCTACGGCGAGGGTGCTCTTCTACCATACATATAAAAAATAAAACTTTGAATTTCAAAACATAACTTTTAAAAAATTATTTCTTTACCACAAATGTCTTCTTGGAACATCTTCTCGGCCACTCTTATGGACTGAAAACAGGTGTTTTCAATCTTACAAGCGAACCCATTAGACTATTATCATCAAGTGGTCATTGAGAACAAAACAATGACACGTGTCTGCTTCAACACTCGACCTGTTTTCTTCTTCAAAATGGATTGCTGAACAACAATATGTAATAGTGTTGCCTATCTTGTCATAATGGTTTTTGGAATCTGGGAACTGGTTGGAAAACACATAACGCCAACTTTGAGCTGATTTATCTCGGTCAATTTAAGAAA</canonical>
            <polymorphic>AATTGTTGTGTAATACAAATAATGGATTGCTCTGTTAGTGAAAAGCGATGGTTACTGTAGAAGCAGTCAGCTTAAAAACATCAAGAACATATTTAACACGGAAGGAAGGAAACTCATTTTCCGAAATACAGAAAAACGGAAACGGATCGAGGCAATTTTTTGTCGGAAAAATTCTCAATTCTCAGATTCCTGGAAAATACCGTAAAACCTATTTACAGCTGTGAGAGGTATTTAGTTAAAGCGAAACCTTTTGATATTTAACACAACCGAAATTTTTTAAATCGGAAAATTTCAAAATTTCTAGAATAATTTTTTTCTAATTGGATTTCTTGAGCAAAGTTTCAAATAAATGAACAGTGTGCTCCAAAATATACATGTTTCAAAAACCTACATACCGTAAACACTCTAATAGAGTGCCACCCAAACCTTCAAATTCCAGCACATGTATCTCAGTTCCAGTAAGAGATATCAAAAACTGGTCAACTGATAAAATGTTTATMGTAATGTCAAAAATATTTTGTTTAGTTGACCAATTTTTGTTATATTTTGCAGGGAATGAGATATATGGGTTCAAAGTTGACAGACACTCTACTAGAGTGTTTACGGTAACTTTGGTCTGAGCCTACGGCGAGGGTGCTCTTCTACCATACATATAAAAAATAAAACTTTGAATTTCAAAACATAACTTTTAAAAAATTATTTCTTTACCACAAATGTCTTCTTGGAACATCTTCTCGGCCACTCTTATGGACTGAAAACAGGTGTTTTCAATCTTACAAGCGAACCCATTAGACTATTATCATCAAGTGGTCATTGAGAACAAAACAATGACACGTGTCTGCTTCAACACTCGACCTGTTTTCTTCTTCAAAATGGATTGCTGAACAACAATATGTAATAGTGTTGCCTATCTTGTCATAATGGTTTTTGGAATCTGGGAACTGGTTGGAAAACACATAACGCCAACTTTGAGCTGATTTATCTCGGTCAATTTAAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATATACATGTTTCAAAAACCTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTATATGTATGGTAGAAGAGCAC</pcr_primer_p2>
		<pcr_amplicon_size>294</pcr_amplicon_size>
		<canonical_amplicon>AAAATATACATGTTTCAAAAACCTACATACCGTAAACACTCTAATAGAGTGCCACCCAAACCTTCAAATTCCAGCACATGTATCTCAGTTCCAGTAAGAGATATCAAAAACTGGTCAACTGATAAAATGTTTATAGTAATGTCAAAAATATTTTGTTTAGTTGACCAATTTTTGTTATATTTTGCAGGGAATGAGATATATGGGTTCAAAGTTGACAGACACTCTACTAGAGTGTTTACGGTAACTTTGGTCTGAGCCTACGGCGAGGGTGCTCTTCTACCATACATATAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAATATACATGTTTCAAAAACCTACATACCGTAAACACTCTAATAGAGTGCCACCCAAACCTTCAAATTCCAGCACATGTATCTCAGTTCCAGTAAGAGATATCAAAAACTGGTCAACTGATAAAATGTTTATMGTAATGTCAAAAATATTTTGTTTAGTTGACCAATTTTTGTTATATTTTGCAGGGAATGAGATATATGGGTTCAAAGTTGACAGACACTCTACTAGAGTGTTTACGGTAACTTTGGTCTGAGCCTACGGCGAGGGTGCTCTTCTACCATACATATAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28298</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>428803</contig_pos>
        <strand>+</strand>
        <context>ATGGTTTTTG[A/G]AATCTGGGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGAACAACAATATGTAATAGTGTTGCCTATCTTGTCATAATGGTTTTTG</left_flank>
        <right_flank>AATCTGGGAACTGGTTGGAAAACACATAACGCCAACTTTGAGCTGATTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTCCAGCACATGTATCTCAGTTCCAGTAAGAGATATCAAAAACTGGTCAACTGATAAAATGTTTATAGTAATGTCAAAAATATTTTGTTTAGTTGACCAATTTTTGTTATATTTTGCAGGGAATGAGATATATGGGTTCAAAGTTGACAGACACTCTACTAGAGTGTTTACGGTAACTTTGGTCTGAGCCTACGGCGAGGGTGCTCTTCTACCATACATATAAAAAATAAAACTTTGAATTTCAAAACATAACTTTTAAAAAATTATTTCTTTACCACAAATGTCTTCTTGGAACATCTTCTCGGCCACTCTTATGGACTGAAAACAGGTGTTTTCAATCTTACAAGCGAACCCATTAGACTATTATCATCAAGTGGTCATTGAGAACAAAACAATGACACGTGTCTGCTTCAACACTCGACCTGTTTTCTTCTTCAAAATGGATTGCTGAACAACAATATGTAATAGTGTTGCCTATCTTGTCATAATGGTTTTTGGAATCTGGGAACTGGTTGGAAAACACATAACGCCAACTTTGAGCTGATTTATCTCGGTCAATTTAAGAAATATCAAAAAGGTACCCACTGTTAAAAAAAACGGTTTAAACTACGATGTAGATTTTGCCAGTTAAGCATCATTCGATATATTTTCACATGTAGAGGGGGACTCCCGAACCTTAACAACCTATTTTTGAGGTGATCCGATGGGAGGAAAATTAACTTTTATCATCGTTGTAGTGGCAGTGCGAAATATTGTTTTCTGGCTGATTTTCAATCGAAACTTTCAAGTCGATTTTGCATAGGGTTCCGATTGCCCGTGGACGGTCCGTCGGTTCTCCTTCGGCTGCCAACTCGCCAGTTTGCGCCTTTTCAGCTGTCATTTAGCAGTTTTTCGACGGTGCCCCTTTCCTTGTATTACAGAAACCGAGTTTCAATAGGCTCAAACCTCATTTGTCAAGAATTTAACGACTAGCTATTGTAGAAAAAGTTGTTTGCTTT</canonical>
            <polymorphic>AATTCCAGCACATGTATCTCAGTTCCAGTAAGAGATATCAAAAACTGGTCAACTGATAAAATGTTTATAGTAATGTCAAAAATATTTTGTTTAGTTGACCAATTTTTGTTATATTTTGCAGGGAATGAGATATATGGGTTCAAAGTTGACAGACACTCTACTAGAGTGTTTACGGTAACTTTGGTCTGAGCCTACGGCGAGGGTGCTCTTCTACCATACATATAAAAAATAAAACTTTGAATTTCAAAACATAACTTTTAAAAAATTATTTCTTTACCACAAATGTCTTCTTGGAACATCTTCTCGGCCACTCTTATGGACTGAAAACAGGTGTTTTCAATCTTACAAGCGAACCCATTAGACTATTATCATCAAGTGGTCATTGAGAACAAAACAATGACACGTGTCTGCTTCAACACTCGACCTGTTTTCTTCTTCAAAATGGATTGCTGAACAACAATATGTAATAGTGTTGCCTATCTTGTCATAATGGTTTTTGRAATCTGGGAACTGGTTGGAAAACACATAACGCCAACTTTGAGCTGATTTATCTCGGTCAATTTAAGAAATATCAAAAAGGTACCCACTGTTAAAAAAAACGGTTTAAACTACGATGTAGATTTTGCCAGTTAAGCATCATTCGATATATTTTCACATGTAGAGGGGGACTCCCGAACCTTAACAACCTATTTTTGAGGTGATCCGATGGGAGGAAAATTAACTTTTATCATCGTTGTAGTGGCAGTGCGAAATATTGTTTTCTGGCTGATTTTCAATCGAAACTTTCAAGTCGATTTTGCATAGGGTTCCGATTGCCCGTGGACGGTCCGTCGGTTCTCCTTCGGCTGCCAACTCGCCAGTTTGCGCCTTTTCAGCTGTCATTTAGCAGTTTTTCGACGGTGCCCCTTTCCTTGTATTACAGAAACCGAGTTTCAATAGGCTCAAACCTCATTTGTCAAGAATTTAACGACTAGCTATTGTAGAAAAAGTTGTTTGCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>500 333 167</canonical_bands>
                <polymorphic_bands>667 333</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTGCTGAACAACAATATGTAAT</pcr_primer_p1>
		<pcr_primer_p2>CCTCAAAAATAGGTTGTTAAGGT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GATTGCTGAACAACAATATGTAATAGTGTTGCCTATCTTGTCATAATGGTTTTTGGAATCTGGGAACTGGTTGGAAAACACATAACGCCAACTTTGAGCTGATTTATCTCGGTCAATTTAAGAAATATCAAAAAGGTACCCACTGTTAAAAAAAACGGTTTAAACTACGATGTAGATTTTGCCAGTTAAGCATCATTCGATATATTTTCACATGTAGAGGGGGACTCCCGAACCTTAACAACCTATTTTTGAGG</canonical_amplicon>
		<polymorphic_amplicon>GATTGCTGAACAACAATATGTAATAGTGTTGCCTATCTTGTCATAATGGTTTTTGRAATCTGGGAACTGGTTGGAAAACACATAACGCCAACTTTGAGCTGATTTATCTCGGTCAATTTAAGAAATATCAAAAAGGTACCCACTGTTAAAAAAAACGGTTTAAACTACGATGTAGATTTTGCCAGTTAAGCATCATTCGATATATTTTCACATGTAGAGGGGGACTCCCGAACCTTAACAACCTATTTTTGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28299</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>459617</contig_pos>
        <strand>+</strand>
        <context>TTTGAAACTT[G/T]TGACGAGAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCTACACGCGTCTGTTGTAAGGTTCCGTTTCAAATGTTTTTTTGAAACTT</left_flank>
        <right_flank>TGACGAGAAGTTGACTATTCGTTTAAATTTTTTAACAATCAAAAATTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACGTCAGCTCCAGAGGCTCCAAAATGCTCACTAAAAATTAGTCCATCCAAAATTAAGATGAGCATTAAGCACAAGAAAGGACCAGTCAACTCCTGTGGAATTGACTTCGAGAAGGCCTACGTGGAGCATAAGGTATTTTTTCAAAGGATCAGCAACCAAAATCAGTTTCATTGAATTTCAGATCTCCCAAGAAATCGAGTCGTTCGGCAACACGGACCATCACGTGGCATTGGAGGAAGCTGCGAAATGTTTCAAGGAAGCGATGTATCGCTGCTTTCCAGGTAAAATAATGTTTCGTATGTACCGTATACACTCTCATAGAAGTACTTGCACTATGAGCCGACATATACTTGCACTTTGAGCCGACATATCTCGGTTTCTGTGAAAGATATGAAAAATTGTCAACAGCCAAAATGTTTGTCATAATATCTTCCTTATATCTAAAACGCTACACGCGTCTGTTGTAAGGTTCCGTTTCAAATGTTTTTTTGAAACTTTTGACGAGAAGTTGACTATTCGTTTAAATTTTTTAACAATCAAAAATTTTCAAGCCTCAAAATAATCAAAACCGTCAAAATGTCAAAAGATTCGTTTTCAAAATAATTATAAAACTCAAAAGGTCAAAAAAGTCATTTGTCAAAAGATTCAAATTGAAATTCGTTGACTTTAGTCAATTATGATTAAAATGCCTCAAAAGGGTCGAAGATGATTTTTATGCGAATAGGTGAAAGTGTGAAACAACGAAATGTGGTATAGTAGTGAGAAGCAGAGATGTTCTGCTTCCGGATTCCGGATTCCGTATTCCGGTTACTGGATTCTGGGTTCCGAATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTAT</canonical>
            <polymorphic>CGACGTCAGCTCCAGAGGCTCCAAAATGCTCACTAAAAATTAGTCCATCCAAAATTAAGATGAGCATTAAGCACAAGAAAGGACCAGTCAACTCCTGTGGAATTGACTTCGAGAAGGCCTACGTGGAGCATAAGGTATTTTTTCAAAGGATCAGCAACCAAAATCAGTTTCATTGAATTTCAGATCTCCCAAGAAATCGAGTCGTTCGGCAACACGGACCATCACGTGGCATTGGAGGAAGCTGCGAAATGTTTCAAGGAAGCGATGTATCGCTGCTTTCCAGGTAAAATAATGTTTCGTATGTACCGTATACACTCTCATAGAAGTACTTGCACTATGAGCCGACATATACTTGCACTTTGAGCCGACATATCTCGGTTTCTGTGAAAGATATGAAAAATTGTCAACAGCCAAAATGTTTGTCATAATATCTTCCTTATATCTAAAACGCTACACGCGTCTGTTGTAAGGTTCCGTTTCAAATGTTTTTTTGAAACTTKTGACGAGAAGTTGACTATTCGTTTAAATTTTTTAACAATCAAAAATTTTCAAGCCTCAAAATAATCAAAACCGTCAAAATGTCAAAAGATTCGTTTTCAAAATAATTATAAAACTCAAAAGGTCAAAAAAGTCATTTGTCAAAAGATTCAAATTGAAATTCGTTGACTTTAGTCAATTATGATTAAAATGCCTCAAAAGGGTCGAAGATGATTTTTATGCGAATAGGTGAAAGTGTGAAACAACGAAATGTGGTATAGTAGTGAGAAGCAGAGATGTTCTGCTTCCGGATTCCGGATTCCGTATTCCGGTTACTGGATTCTGGGTTCCGAATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTATTCCGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTCTCATAGAAGTACTTGCACTAT</pcr_primer_p1>
		<pcr_primer_p2>GAGGCTTGAAAATTTTTGATT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACTCTCATAGAAGTACTTGCACTATGAGCCGACATATACTTGCACTTTGAGCCGACATATCTCGGTTTCTGTGAAAGATATGAAAAATTGTCAACAGCCAAAATGTTTGTCATAATATCTTCCTTATATCTAAAACGCTACACGCGTCTGTTGTAAGGTTCCGTTTCAAATGTTTTTTTGAAACTTTTGACGAGAAGTTGACTATTCGTTTAAATTTTTTAACAATCAAAAATTTTCAAGCCTC</canonical_amplicon>
		<polymorphic_amplicon>CACTCTCATAGAAGTACTTGCACTATGAGCCGACATATACTTGCACTTTGAGCCGACATATCTCGGTTTCTGTGAAAGATATGAAAAATTGTCAACAGCCAAAATGTTTGTCATAATATCTTCCTTATATCTAAAACGCTACACGCGTCTGTTGTAAGGTTCCGTTTCAAATGTTTTTTTGAAACTTKTGACGAGAAGTTGACTATTCGTTTAAATTTTTTAACAATCAAAAATTTTCAAGCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28300</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>518908</contig_pos>
        <strand></strand>
        <context>tctcccgcgg[A/C]cgcggaaaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTACTCTTGTTTTTAGTGTCTACAGTTTGAGTTTTCTAGTCTCCCGCGG</left_flank>
        <right_flank>CGCGGAAAATTCCGTATTTGAATTTTTCTTGATTTTCAATATTTTTTTCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGATAAGACCAGTTTTCAATCGAAATTTGAAGTTTGTAGGAAAATCTTATTTGAAAAAATCTTATCTTCTGCGAATAGAATATGAAAATCTCGAGATAAATTTTAATTGAATTTAAAGGTGGTGTACGGTGTATTTTTCAATCGCTTTCTGTGCATAAAAACATGTAGATTCACATTAAAAAAAAAGAAAAATTCGAAAAAATCCCTCTGAAAAGTGCTTGATTTTTCTGTTCCCCCTCATAATTTTTAGACCTTTTCCGGTTTTTAAGCAATTGTTAAAGTTTTTCTTTCAAAACTACAAAGAAATTAGCTTCTGTAATCTACAGTAATCTTCAAGAATATCTTCTCGACAATTTTCAGACAAAGAACCCGGAAAATGGTAAAAGAATCTCCAAAAATAGCCGAAAAACCTAAAAAAGGTCTGAAAAATTGAGTAAAAAACCTATTTTTACTCTTGTTTTTAGTGTCTACAGTTTGAGTTTTCTAGTCTCCCGCGGACGCGGAAAATTCCGTATTTGAATTTTTCTTGATTTTCAATATTTTTTTCTGGTTTTTCGAGATTTATTTTTCTTCCAGAATATCTCGAAAAATCTGGAAAAAAAACTCAAGCTCGTCCCTAAGGGGCAACAGAAAACTTTGAAAAACAACGATTATTTACAGTTTCCAAATCTCCATAGCGTTTCGAATTCCCCAAATTCTCACCGAAACCAATATAAATTGCAGCAATTCCTTTCCCCCAGCTTTTCGTTTATCATTTGTCTTTCTCTTTTTAGATTTTCGTGTGACTTCTTACTGCTTGCTGCCAATCAAAATCTAATTTCCCTCCCTTTGACTTTCTTCTCTTTTTTGTTTGTCTTTCTGTCACCACTAAATCCACTAGGCTTCAAGTTGTCAAGGTAACCACCCAAAAACGGGCGTCCCGTTTTTGGCGCGTATGTGAAAATGATAACTTTTCTTGTTCTCTCCCTCGCCTCGTTTTTCAGAACTAAACAAGAAAA</canonical>
            <polymorphic>TGGGATAAGACCAGTTTTCAATCGAAATTTGAAGTTTGTAGGAAAATCTTATTTGAAAAAATCTTATCTTCTGCGAATAGAATATGAAAATCTCGAGATAAATTTTAATTGAATTTAAAGGTGGTGTACGGTGTATTTTTCAATCGCTTTCTGTGCATAAAAACATGTAGATTCACATTAAAAAAAAAGAAAAATTCGAAAAAATCCCTCTGAAAAGTGCTTGATTTTTCTGTTCCCCCTCATAATTTTTAGACCTTTTCCGGTTTTTAAGCAATTGTTAAAGTTTTTCTTTCAAAACTACAAAGAAATTAGCTTCTGTAATCTACAGTAATCTTCAAGAATATCTTCTCGACAATTTTCAGACAAAGAACCCGGAAAATGGTAAAAGAATCTCCAAAAATAGCCGAAAAACCTAAAAAAGGTCTGAAAAATTGAGTAAAAAACCTATTTTTACTCTTGTTTTTAGTGTCTACAGTTTGAGTTTTCTAGTCTCCCGCGGMCGCGGAAAATTCCGTATTTGAATTTTTCTTGATTTTCAATATTTTTTTCTGGTTTTTCGAGATTTATTTTTCTTCCAGAATATCTCGAAAAATCTGGAAAAAAAACTCAAGCTCGTCCCTAAGGGGCAACAGAAAACTTTGAAAAACAACGATTATTTACAGTTTCCAAATCTCCATAGCGTTTCGAATTCCCCAAATTCTCACCGAAACCAATATAAATTGCAGCAATTCCTTTCCCCCAGCTTTTCGTTTATCATTTGTCTTTCTCTTTTTAGATTTTCGTGTGACTTCTTACTGCTTGCTGCCAATCAAAATCTAATTTCCCTCCCTTTGACTTTCTTCTCTTTTTTGTTTGTCTTTCTGTCACCACTAAATCCACTAGGCTTCAAGTTGTCAAGGTAACCACCCAAAAACGGGCGTCCCGTTTTTGGCGCGTATGTGAAAATGATAACTTTTCTTGTTCTCTCCCTCGCCTCGTTTTTCAGAACTAAACAAGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGCTTGATTTTTCTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>AATAAATCTCGAAAAACCAGAA</pcr_primer_p2>
		<pcr_amplicon_size>353</pcr_amplicon_size>
		<canonical_amplicon>AGTGCTTGATTTTTCTGTTCCCCCTCATAATTTTTAGACCTTTTCCGGTTTTTAAGCAATTGTTAAAGTTTTTCTTTCAAAACTACAAAGAAATTAGCTTCTGTAATCTACAGTAATCTTCAAGAATATCTTCTCGACAATTTTCAGACAAAGAACCCGGAAAATGGTAAAAGAATCTCCAAAAATAGCCGAAAAACCTAAAAAAGGTCTGAAAAATTGAGTAAAAAACCTATTTTTACTCTTGTTTTTAGTGTCTACAGTTTGAGTTTTCTAGTCTCCCGCGGACGCGGAAAATTCCGTATTTGAATTTTTCTTGATTTTCAATATTTTTTTCTGGTTTTTCGAGATTTATT</canonical_amplicon>
		<polymorphic_amplicon>AGTGCTTGATTTTTCTGTTCCCCCTCATAATTTTTAGACCTTTTCCGGTTTTTAAGCAATTGTTAAAGTTTTTCTTTCAAAACTACAAAGAAATTAGCTTCTGTAATCTACAGTAATCTTCAAGAATATCTTCTCGACAATTTTCAGACAAAGAACCCGGAAAATGGTAAAAGAATCTCCAAAAATAGCCGAAAAACCTAAAAAAGGTCTGAAAAATTGAGTAAAAAACCTATTTTTACTCTTGTTTTTAGTGTCTACAGTTTGAGTTTTCTAGTCTCCCGCGGMCGCGGAAAATTCCGTATTTGAATTTTTCTTGATTTTCAATATTTTTTTCTGGTTTTTCGAGATTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28301</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>521281</contig_pos>
        <strand>+</strand>
        <context>AATTGGAATT[A/T]AAAAAAACCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGTTCCGGGAACATTCTATTACAGGTTGGACGGTAGTAGAATTGGAATT</left_flank>
        <right_flank>AAAAAAACCGTTCAATATCTTCAGGTGCTCCCTGCACAACCTCCAAACGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTGTTTTGTATTAATCACCATTTGTATAGTAGTGTTAGCACGTGACATCCTCCTGAAGCCATAGAATCCGTCAGTCGGGATAGCTCTCGAGAATTCCCAAATCCTCGGCTTCGTCACACACATTCTTCTTTCTTCTTTTCCACTAATTTTCAACACAAACACGTCCTCTTACACTAAACTACGAATCTTTCCCTTTCAAAACTTTTACTGGTTTCGCTGATAAAATGTATCAGGATTCGCAGGTTTGCTTTTCTTCCCTATTCGCGTAAAACCTGTAATATAAGAGCCTTCCCACTGTTCAGTTTGAGCTAAATACTCTTGCGTTCTGTTCAGGATATCAAAATGGGTCAACTGATAAAATTTTCATGACATTATGATAAACAATTTATCAGTCGACAACTTTTATATATCTTTGGCAAGAACCGAGATAAATCTGCTCAAAGTTAAAAGTTCCGGGAACATTCTATTACAGGTTGGACGGTAGTAGAATTGGAATTTAAAAAAACCGTTCAATATCTTCAGGTGCTCCCTGCACAACCTCCAAACGGAATGAGGAGGACATTTGAAAATTCGGGTATAACCTTCGGTTCATATACAGCAAAAACTGTTACTGTCTACAAAGAGGGTGACCTACATTTTGCGGTTCGTTTTTTATAATTTTAAACTTCCTTGACACCATCGAGCATATTAAGAACTCAAAAAAATTTACAATCTTATATCTTAAGGGTGTCCGTGTTCCTGTATCCAAACAACGTTACACAACCATAGCTAATTTGATGGATGATCTCAATCGGATAATATATTTGCCGTATGGGGTATGTTTCGATTTTATGCTTTTCAAGTTTTGGTTTCTTTTCTTTTCTTCCCTTCCCTTTTATTTAGGTTTTTCAAAAATTATAAATGAAATCTTTCGACATTTTTAATCAGTCGGTTTACGCCATCTGTCGGAGTCTCGACCTTCGAATCTGCATTTGAATTTCTAACTTCAGCATTTCCCA</canonical>
            <polymorphic>TATTGTTTTGTATTAATCACCATTTGTATAGTAGTGTTAGCACGTGACATCCTCCTGAAGCCATAGAATCCGTCAGTCGGGATAGCTCTCGAGAATTCCCAAATCCTCGGCTTCGTCACACACATTCTTCTTTCTTCTTTTCCACTAATTTTCAACACAAACACGTCCTCTTACACTAAACTACGAATCTTTCCCTTTCAAAACTTTTACTGGTTTCGCTGATAAAATGTATCAGGATTCGCAGGTTTGCTTTTCTTCCCTATTCGCGTAAAACCTGTAATATAAGAGCCTTCCCACTGTTCAGTTTGAGCTAAATACTCTTGCGTTCTGTTCAGGATATCAAAATGGGTCAACTGATAAAATTTTCATGACATTATGATAAACAATTTATCAGTCGACAACTTTTATATATCTTTGGCAAGAACCGAGATAAATCTGCTCAAAGTTAAAAGTTCCGGGAACATTCTATTACAGGTTGGACGGTAGTAGAATTGGAATTWAAAAAAACCGTTCAATATCTTCAGGTGCTCCCTGCACAACCTCCAAACGGAATGAGGAGGACATTTGAAAATTCGGGTATAACCTTCGGTTCATATACAGCAAAAACTGTTACTGTCTACAAAGAGGGTGACCTACATTTTGCGGTTCGTTTTTTATAATTTTAAACTTCCTTGACACCATCGAGCATATTAAGAACTCAAAAAAATTTACAATCTTATATCTTAAGGGTGTCCGTGTTCCTGTATCCAAACAACGTTACACAACCATAGCTAATTTGATGGATGATCTCAATCGGATAATATATTTGCCGTATGGGGTATGTTTCGATTTTATGCTTTTCAAGTTTTGGTTTCTTTTCTTTTCTTCCCTTCCCTTTTATTTAGGTTTTTCAAAAATTATAAATGAAATCTTTCGACATTTTTAATCAGTCGGTTTACGCCATCTGTCGGAGTCTCGACCTTCGAATCTGCATTTGAATTTCTAACTTCAGCATTTCCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>272 267 135 135 93 74 24</canonical_bands>
                <polymorphic_bands>272 267 209 135 93 24</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 337 163</canonical_bands>
                <polymorphic_bands>663 337</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>433 199 163 78 53 33 28 13</canonical_bands>
                <polymorphic_bands>433 216 199 78 33 28 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTGCTTTTCTTCCCTATTC</pcr_primer_p1>
		<pcr_primer_p2>TTCAAATGTCCTCCTCATTC</pcr_primer_p2>
		<pcr_amplicon_size>325</pcr_amplicon_size>
		<canonical_amplicon>GTTTGCTTTTCTTCCCTATTCGCGTAAAACCTGTAATATAAGAGCCTTCCCACTGTTCAGTTTGAGCTAAATACTCTTGCGTTCTGTTCAGGATATCAAAATGGGTCAACTGATAAAATTTTCATGACATTATGATAAACAATTTATCAGTCGACAACTTTTATATATCTTTGGCAAGAACCGAGATAAATCTGCTCAAAGTTAAAAGTTCCGGGAACATTCTATTACAGGTTGGACGGTAGTAGAATTGGAATTTAAAAAAACCGTTCAATATCTTCAGGTGCTCCCTGCACAACCTCCAAACGGAATGAGGAGGACATTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GTTTGCTTTTCTTCCCTATTCGCGTAAAACCTGTAATATAAGAGCCTTCCCACTGTTCAGTTTGAGCTAAATACTCTTGCGTTCTGTTCAGGATATCAAAATGGGTCAACTGATAAAATTTTCATGACATTATGATAAACAATTTATCAGTCGACAACTTTTATATATCTTTGGCAAGAACCGAGATAAATCTGCTCAAAGTTAAAAGTTCCGGGAACATTCTATTACAGGTTGGACGGTAGTAGAATTGGAATTWAAAAAAACCGTTCAATATCTTCAGGTGCTCCCTGCACAACCTCCAAACGGAATGAGGAGGACATTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28302</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>547279</contig_pos>
        <strand>+</strand>
        <context>CTATTAGAAT[G/T]TATTTTTCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATGTGTTTATATTCTAGACCAGTTTTGGTTATTGTTTTTCTATTAGAAT</left_flank>
        <right_flank>TATTTTTCTTATCATCTATTTTCCTTTAACTAAAGTTCCAATTTTACAGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATGCAGGTTCGAATAAATTTTTATAATTCTTCGAAATTACAATTTGAACATTTCAGAACGACATAATGGAACAGTTAATACCACAAGATGCATCAGGTGCAGTTGAGAATCTCGCTGATTTAAATGTGACCTCTAATTTAGGACGGATGACACACTATTATTTCCAACAGGTTTTAAAACTACCAGTTTCCTCAAAAGAAATTCGATATTTCAGGGTGGAAAAATGTTGCGACCTACAGTATCCTTACTAATGGGAAACGCTTGTAATTCCGCTATGAATCGATCCATTCCGTATGAAAATATTCTAGTTTCAACATCTTTGAGTTTCCTTTTTTCCAGAGAAGAGCAAATTGCAATACCGATTTCCGAACGATCTGCCATTTCTTCTCATTTGATCGTGTGCCAGAACCAATACAAAATTGGTATGATTGGTAAGCTTAATTTGAAATGTGTTTATATTCTAGACCAGTTTTGGTTATTGTTTTTCTATTAGAATGTATTTTTCTTATCATCTATTTTCCTTTAACTAAAGTTCCAATTTTACAGCGGAAATGATCCACACAGCATCTTTGGTTCATGATGACGTCATTGATGAAGCGAATACAAGACGAGGATCTGCAAGTGTCAATGCTGTTTGGGGAAACAAAATGTCTGTACTTGTTGGTGATTTCATTTTGGCACGAGCTACTCAGATTCTCTGTTCAATCGGAAAGCCTAACGTCATTGCAGTTATGGCGTCAATCATTGAAGACCTAGTTTTGGTCAGTTATTTATACTCTTTGAAATCTTCAAAATTATAAATTGTAGGGAGAATTCATGCAGATGTCTGTAACGCCTTCAGAAGCAACTCCATCACAGAGAATGGTCGCATATATTGAAAAGACTCATCGAAAAACTGCCAGTTTATTTGCCAGCAGTTGTCGGTCAACTGCCATTCTTGCAGGTAATCACAGTTGTTTGTTGCGTGTATCTATAAAAAAGATTCAGATTCATCAAA</canonical>
            <polymorphic>CAAATGCAGGTTCGAATAAATTTTTATAATTCTTCGAAATTACAATTTGAACATTTCAGAACGACATAATGGAACAGTTAATACCACAAGATGCATCAGGTGCAGTTGAGAATCTCGCTGATTTAAATGTGACCTCTAATTTAGGACGGATGACACACTATTATTTCCAACAGGTTTTAAAACTACCAGTTTCCTCAAAAGAAATTCGATATTTCAGGGTGGAAAAATGTTGCGACCTACAGTATCCTTACTAATGGGAAACGCTTGTAATTCCGCTATGAATCGATCCATTCCGTATGAAAATATTCTAGTTTCAACATCTTTGAGTTTCCTTTTTTCCAGAGAAGAGCAAATTGCAATACCGATTTCCGAACGATCTGCCATTTCTTCTCATTTGATCGTGTGCCAGAACCAATACAAAATTGGTATGATTGGTAAGCTTAATTTGAAATGTGTTTATATTCTAGACCAGTTTTGGTTATTGTTTTTCTATTAGAATKTATTTTTCTTATCATCTATTTTCCTTTAACTAAAGTTCCAATTTTACAGCGGAAATGATCCACACAGCATCTTTGGTTCATGATGACGTCATTGATGAAGCGAATACAAGACGAGGATCTGCAAGTGTCAATGCTGTTTGGGGAAACAAAATGTCTGTACTTGTTGGTGATTTCATTTTGGCACGAGCTACTCAGATTCTCTGTTCAATCGGAAAGCCTAACGTCATTGCAGTTATGGCGTCAATCATTGAAGACCTAGTTTTGGTCAGTTATTTATACTCTTTGAAATCTTCAAAATTATAAATTGTAGGGAGAATTCATGCAGATGTCTGTAACGCCTTCAGAAGCAACTCCATCACAGAGAATGGTCGCATATATTGAAAAGACTCATCGAAAAACTGCCAGTTTATTTGCCAGCAGTTGTCGGTCAACTGCCATTCTTGCAGGTAATCACAGTTGTTTGTTGCGTGTATCTATAAAAAAGATTCAGATTCATCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATTGGTAAGCTTAATTTGAA</pcr_primer_p1>
		<pcr_primer_p2>AATGAAATCACCAACAAGTACAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGATTGGTAAGCTTAATTTGAAATGTGTTTATATTCTAGACCAGTTTTGGTTATTGTTTTTCTATTAGAATGTATTTTTCTTATCATCTATTTTCCTTTAACTAAAGTTCCAATTTTACAGCGGAAATGATCCACACAGCATCTTTGGTTCATGATGACGTCATTGATGAAGCGAATACAAGACGAGGATCTGCAAGTGTCAATGCTGTTTGGGGAAACAAAATGTCTGTACTTGTTGGTGATTTCATT</canonical_amplicon>
		<polymorphic_amplicon>ATGATTGGTAAGCTTAATTTGAAATGTGTTTATATTCTAGACCAGTTTTGGTTATTGTTTTTCTATTAGAATKTATTTTTCTTATCATCTATTTTCCTTTAACTAAAGTTCCAATTTTACAGCGGAAATGATCCACACAGCATCTTTGGTTCATGATGACGTCATTGATGAAGCGAATACAAGACGAGGATCTGCAAGTGTCAATGCTGTTTGGGGAAACAAAATGTCTGTACTTGTTGGTGATTTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28303</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>550423</contig_pos>
        <strand></strand>
        <context>TGTTATTGGC[A/G]CAGCTTGTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAAGAGTGGGACATTTAGCTGGTTACCTTATCAAAATACTGTTATTGGC</left_flank>
        <right_flank>CAGCTTGTGATTTCGGAGCACTTCCATTTTTGAGTGGCGATTGAAATAAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGATCGGCAAGCCGGCTAGCTAGATTCGCATATCGCCTAGGTAGATTCGCATGTCGTCTAGTTAGATTATGATGCTTCCTCATTAGATTTTCTTTTTTTTGAAAGTTTATTGATTTTTTAAAAAAATTCGGATTATAAAAAGGTTTATTGAACAAAAACGCAATATACAACAAATGAGGGGACTAAGAAAAAGATTTAAGAATGACAAATGAGGAATTATCAAATTATCCTGTTAAATTTGTAGAAATCTTCGCTTCCGCCTATATTTCGAATTTTGAGGTCGTCATGTCTTTGCTGGTAGTGTTTTGAATTATAGAGATCCTTCCAAATATCGCTATGACAAGTCGATATCTTCGCTCCAGACAGCTCCGAATCCCAAATATTCGTCGAATTTTTCCGATCGTAGACGTTGAATATTTGGAAACTGAAATTTTTTAATTGTGCCATTTAAAGAGTGGGACATTTAGCTGGTTACCTTATCAAAATACTGTTATTGGCACAGCTTGTGATTTCGGAGCACTTCCATTTTTGAGTGGCGATTGAAATAACTGTTGATATCATTTTGGATTGAGTGGCCAACAATAGAAAGTATGTCCGCTTCAGTTCTTCTCGTTCCAAAGATCTCCATAAAGAACTTGAAAAGGTAACATTCATTTGGCGTTTCTAGAACAATTACCTCCGGTGTTTGTATCCTCTGTGTGAATGCCATCATATTCAACAAATTTTCGTCAAAGAAGATATTAACTTTTCCCGAATTTTCGAACAGCACTGGCGATTTCTGCGATCGAATTTAAGTTTTTGGTAGAAATGGAATCCAGATCAGCTTACAATCTCATTTTCATCAAAATTTCTAAATTCGGTTTAGATAACGACATTAAACATGAAAAAATACATTTTGTGGGCGGACCCATATCAATAAACAATGGACTCGTTTCCGAGAAATTTAGGACCAGAAAATTTATTTCAAAAACTGTAAAAATACGGACAAACTACGAAAAA</canonical>
            <polymorphic>TAGATCGGCAAGCCGGCTAGCTAGATTCGCATATCGCCTAGGTAGATTCGCATGTCGTCTAGTTAGATTATGATGCTTCCTCATTAGATTTTCTTTTTTTTGAAAGTTTATTGATTTTTTAAAAAAATTCGGATTATAAAAAGGTTTATTGAACAAAAACGCAATATACAACAAATGAGGGGACTAAGAAAAAGATTTAAGAATGACAAATGAGGAATTATCAAATTATCCTGTTAAATTTGTAGAAATCTTCGCTTCCGCCTATATTTCGAATTTTGAGGTCGTCATGTCTTTGCTGGTAGTGTTTTGAATTATAGAGATCCTTCCAAATATCGCTATGACAAGTCGATATCTTCGCTCCAGACAGCTCCGAATCCCAAATATTCGTCGAATTTTTCCGATCGTAGACGTTGAATATTTGGAAACTGAAATTTTTTAATTGTGCCATTTAAAGAGTGGGACATTTAGCTGGTTACCTTATCAAAATACTGTTATTGGCRCAGCTTGTGATTTCGGAGCACTTCCATTTTTGAGTGGCGATTGAAATAACTGTTGATATCATTTTGGATTGAGTGGCCAACAATAGAAAGTATGTCCGCTTCAGTTCTTCTCGTTCCAAAGATCTCCATAAAGAACTTGAAAAGGTAACATTCATTTGGCGTTTCTAGAACAATTACCTCCGGTGTTTGTATCCTCTGTGTGAATGCCATCATATTCAACAAATTTTCGTCAAAGAAGATATTAACTTTTCCCGAATTTTCGAACAGCACTGGCGATTTCTGCGATCGAATTTAAGTTTTTGGTAGAAATGGAATCCAGATCAGCTTACAATCTCATTTTCATCAAAATTTCTAAATTCGGTTTAGATAACGACATTAAACATGAAAAAATACATTTTGTGGGCGGACCCATATCAATAAACAATGGACTCGTTTCCGAGAAATTTAGGACCAGAAAATTTATTTCAAAAACTGTAAAAATACGGACAAACTACGAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>304 140 132 110 99 67 42 39 16 15 14 11 9 2</canonical_bands>
                <polymorphic_bands>304 140 132 110 99 67 51 39 16 15 14 11 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATATTTTCTTTTCATCCTACG</pcr_primer_p1>
		<pcr_primer_p2>CAGTTATTTCAATCGCCACT</pcr_primer_p2>
		<pcr_amplicon_size>700</pcr_amplicon_size>
		<canonical_amplicon>CACAGCTTGTGATTTCGGAGCACTTCCATTTTTGAGTGGCGATTGAAATAACTG</canonical_amplicon>
		<polymorphic_amplicon>CRCAGCTTGTGATTTCGGAGCACTTCCATTTTTGAGTGGCGATTGAAATAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28304</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>550487</contig_pos>
        <strand></strand>
        <context>TGATATCATT[T/A]TGGATTGAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CGGAGCACTTCCATTTTTGAGTGGCGATTGAAATAACTGTTGATATCATT</left_flank>
        <right_flank>TGGATTGAGTGGCCAACAATAGAAAGTATGTCCGCTTCAGTTCTTCTCGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATTATGATGCTTCCTCATTAGATTTTCTTTTTTTTGAAAGTTTATTGATTTTTTAAAAAAATTCGGATTATAAAAAGGTTTATTGAACAAAAACGCAATATACAACAAATGAGGGGACTAAGAAAAAGATTTAAGAATGACAAATGAGGAATTATCAAATTATCCTGTTAAATTTGTAGAAATCTTCGCTTCCGCCTATATTTCGAATTTTGAGGTCGTCATGTCTTTGCTGGTAGTGTTTTGAATTATAGAGATCCTTCCAAATATCGCTATGACAAGTCGATATCTTCGCTCCAGACAGCTCCGAATCCCAAATATTCGTCGAATTTTTCCGATCGTAGACGTTGAATATTTGGAAACTGAAATTTTTTAATTGTGCCATTTAAAGAGTGGGACATTTAGCTGGTTACCTTATCAAAATACTGTTATTGGCACAGCTTGTGATTTCGGAGCACTTCCATTTTTGAGTGGCGATTGAAATAACTGTTGATATCATTTTGGATTGAGTGGCCAACAATAGAAAGTATGTCCGCTTCAGTTCTTCTCGTTCCAAAGATCTCCATAAAGAACTTGAAAAGGTAACATTCATTTGGCGTTTCTAGAACAATTACCTCCGGTGTTTGTATCCTCTGTGTGAATGCCATCATATTCAACAAATTTTCGTCAAAGAAGATATTAACTTTTCCCGAATTTTCGAACAGCACTGGCGATTTCTGCGATCGAATTTAAGTTTTTGGTAGAAATGGAATCCAGATCAGCTTACAATCTCATTTTCATCAAAATTTCTAAATTCGGTTTAGATAACGACATTAAACATGAAAAAATACATTTTGTGGGCGGACCCATATCAATAAACAATGGACTCGTTTCCGAGAAATTTAGGACCAGAAAATTTATTTCAAAAACTGTAAAAATACGGACAAACTACGAAAAAACGATGAAAACAAAAGTAAATAAATTTGAACTAGCCGAATCTAGCTAGTTTCTAATTAGGTTCG</canonical>
            <polymorphic>AGATTATGATGCTTCCTCATTAGATTTTCTTTTTTTTGAAAGTTTATTGATTTTTTAAAAAAATTCGGATTATAAAAAGGTTTATTGAACAAAAACGCAATATACAACAAATGAGGGGACTAAGAAAAAGATTTAAGAATGACAAATGAGGAATTATCAAATTATCCTGTTAAATTTGTAGAAATCTTCGCTTCCGCCTATATTTCGAATTTTGAGGTCGTCATGTCTTTGCTGGTAGTGTTTTGAATTATAGAGATCCTTCCAAATATCGCTATGACAAGTCGATATCTTCGCTCCAGACAGCTCCGAATCCCAAATATTCGTCGAATTTTTCCGATCGTAGACGTTGAATATTTGGAAACTGAAATTTTTTAATTGTGCCATTTAAAGAGTGGGACATTTAGCTGGTTACCTTATCAAAATACTGTTATTGGCACAGCTTGTGATTTCGGAGCACTTCCATTTTTGAGTGGCGATTGAAATAACTGTTGATATCATTWTGGATTGAGTGGCCAACAATAGAAAGTATGTCCGCTTCAGTTCTTCTCGTTCCAAAGATCTCCATAAAGAACTTGAAAAGGTAACATTCATTTGGCGTTTCTAGAACAATTACCTCCGGTGTTTGTATCCTCTGTGTGAATGCCATCATATTCAACAAATTTTCGTCAAAGAAGATATTAACTTTTCCCGAATTTTCGAACAGCACTGGCGATTTCTGCGATCGAATTTAAGTTTTTGGTAGAAATGGAATCCAGATCAGCTTACAATCTCATTTTCATCAAAATTTCTAAATTCGGTTTAGATAACGACATTAAACATGAAAAAATACATTTTGTGGGCGGACCCATATCAATAAACAATGGACTCGTTTCCGAGAAATTTAGGACCAGAAAATTTATTTCAAAAACTGTAAAAATACGGACAAACTACGAAAAAACGATGAAAACAAAAGTAAATAAATTTGAACTAGCCGAATCTAGCTAGTTTCTAATTAGGTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGACATTTAGCTGGTTACCTTAT</pcr_primer_p1>
		<pcr_primer_p2>TTCACACAGAGGATACAAACAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGACATTTAGCTGGTTACCTTATCAAAATACTGTTATTGGCACAGCTTGTGATTTCGGAGCACTTCCATTTTTGAGTGGCGATTGAAATAACTGTTGATATCATTTTGGATTGAGTGGCCAACAATAGAAAGTATGTCCGCTTCAGTTCTTCTCGTTCCAAAGATCTCCATAAAGAACTTGAAAAGGTAACATTCATTTGGCGTTTCTAGAACAATTACCTCCGGTGTTTGTATCCTCTGTGTGAA</canonical_amplicon>
		<polymorphic_amplicon>GGACATTTAGCTGGTTACCTTATCAAAATACTGTTATTGGCACAGCTTGTGATTTCGGAGCACTTCCATTTTTGAGTGGCGATTGAAATAACTGTTGATATCATTWTGGATTGAGTGGCCAACAATAGAAAGTATGTCCGCTTCAGTTCTTCTCGTTCCAAAGATCTCCATAAAGAACTTGAAAAGGTAACATTCATTTGGCGTTTCTAGAACAATTACCTCCGGTGTTTGTATCCTCTGTGTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28305</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>550628</contig_pos>
        <strand></strand>
        <context>TCTGTGTGAA[T/C]GCCATCATAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTGGCGTTTCTAGAACAATTACCTCCGGTGTTTGTATCCTCTGTGTGAA</left_flank>
        <right_flank>GCCATCATATTCAACAAATTTTCGTCAAAGAAGATATTAACTTTTCCCGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAATGAGGAATTATCAAATTATCCTGTTAAATTTGTAGAAATCTTCGCTTCCGCCTATATTTCGAATTTTGAGGTCGTCATGTCTTTGCTGGTAGTGTTTTGAATTATAGAGATCCTTCCAAATATCGCTATGACAAGTCGATATCTTCGCTCCAGACAGCTCCGAATCCCAAATATTCGTCGAATTTTTCCGATCGTAGACGTTGAATATTTGGAAACTGAAATTTTTTAATTGTGCCATTTAAAGAGTGGGACATTTAGCTGGTTACCTTATCAAAATACTGTTATTGGCACAGCTTGTGATTTCGGAGCACTTCCATTTTTGAGTGGCGATTGAAATAACTGTTGATATCATTTTGGATTGAGTGGCCAACAATAGAAAGTATGTCCGCTTCAGTTCTTCTCGTTCCAAAGATCTCCATAAAGAACTTGAAAAGGTAACATTCATTTGGCGTTTCTAGAACAATTACCTCCGGTGTTTGTATCCTCTGTGTGAATGCCATCATATTCAACAAATTTTCGTCAAAGAAGATATTAACTTTTCCCGAATTTTCGAACAGCACTGGCGATTTCTGCGATCGAATTTAAGTTTTTGGTAGAAATGGAATCCAGATCAGCTTACAATCTCATTTTCATCAAAATTTCTAAATTCGGTTTAGATAACGACATTAAACATGAAAAAATACATTTTGTGGGCGGACCCATATCAATAAACAATGGACTCGTTTCCGAGAAATTTAGGACCAGAAAATTTATTTCAAAAACTGTAAAAATACGGACAAACTACGAAAAAACGATGAAAACAAAAGTAAATAAATTTGAACTAGCCGAATCTAGCTAGTTTCTAATTAGGTTCGCTCATTCGCGCATTAGAAAAAAAATCTATCTAGATTTGCAAATATCGACTGGCCGTACCGAAAATAACTAGATCCATATTACATGTGATTATTTTATAATTTTGCTACTACAATCTATTTAGATATGGCATTCCTAGTTAG</canonical>
            <polymorphic>ACAAATGAGGAATTATCAAATTATCCTGTTAAATTTGTAGAAATCTTCGCTTCCGCCTATATTTCGAATTTTGAGGTCGTCATGTCTTTGCTGGTAGTGTTTTGAATTATAGAGATCCTTCCAAATATCGCTATGACAAGTCGATATCTTCGCTCCAGACAGCTCCGAATCCCAAATATTCGTCGAATTTTTCCGATCGTAGACGTTGAATATTTGGAAACTGAAATTTTTTAATTGTGCCATTTAAAGAGTGGGACATTTAGCTGGTTACCTTATCAAAATACTGTTATTGGCACAGCTTGTGATTTCGGAGCACTTCCATTTTTGAGTGGCGATTGAAATAACTGTTGATATCATTTTGGATTGAGTGGCCAACAATAGAAAGTATGTCCGCTTCAGTTCTTCTCGTTCCAAAGATCTCCATAAAGAACTTGAAAAGGTAACATTCATTTGGCGTTTCTAGAACAATTACCTCCGGTGTTTGTATCCTCTGTGTGAAYGCCATCATATTCAACAAATTTTCGTCAAAGAAGATATTAACTTTTCCCGAATTTTCGAACAGCACTGGCGATTTCTGCGATCGAATTTAAGTTTTTGGTAGAAATGGAATCCAGATCAGCTTACAATCTCATTTTCATCAAAATTTCTAAATTCGGTTTAGATAACGACATTAAACATGAAAAAATACATTTTGTGGGCGGACCCATATCAATAAACAATGGACTCGTTTCCGAGAAATTTAGGACCAGAAAATTTATTTCAAAAACTGTAAAAATACGGACAAACTACGAAAAAACGATGAAAACAAAAGTAAATAAATTTGAACTAGCCGAATCTAGCTAGTTTCTAATTAGGTTCGCTCATTCGCGCATTAGAAAAAAAATCTATCTAGATTTGCAAATATCGACTGGCCGTACCGAAAATAACTAGATCCATATTACATGTGATTATTTTATAATTTTGCTACTACAATCTATTTAGATATGGCATTCCTAGTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGGCGTTTCTAGAACAAT</pcr_primer_p1>
		<pcr_primer_p2>ACAATAGCTGTGCTTTGAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>671</pcr_amplicon_size>
		<canonical_amplicon>ATTTGGCGTTTCTAGAACAATTACCTCCGGTGTTTGTATCCTCTGTGTGAATGCCATCATATTCAACAAATTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTGGCGTTTCTAGAACAATTACCTCCGGTGTTTGTATCCTCTGTGTGAAYGCCATCATATTCAACAAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28306</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>560433</contig_pos>
        <strand>+</strand>
        <context>TAAAACTCTA[C/T]TTTTTTTTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTCGATTTTCACCTTTAAAAATTCTCGATCATCAGTTGTAAAACTCTA</left_flank>
        <right_flank>TTTTTTTTGCTTCAAAATCCCAATTTTTGGTTTTAAAAATTCGGATTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCATTCTCGAGTGGAAAAATCGCAAATATTATTTGTTTTTTTTGGCATATTCAGAATCCTCGTTATGCTTCAACGGAAGCTACAAGTTCTGCCCTTTGAATATTAGCATCCCCTGTAAATCGCGTATCGAAAAGATTGCGTAACCATTCGTCTCTCTCTTTTTTCTCTATACATCGTCTAAGCTTAATCTCACTTTCTATCGTAATTCATTCTTCGGATAAATGGCATTCTGTAGAGAGAAATAGAAGGGAGGATTCATGGATGTTCAACAGCTATATGTTCGCTCTTATCAGTTTACATTTGTCTCATTTGTCTCATTTATCTTCTTTATTTTGTGTTAATTGAATGACAGAGATGAATACGATGTGTGACGTAGAACTTGCTGAATGTTAACATTATTTCTGAAATCTCGCTAAACTAACGAGGGGTTCTGATATTCAGTTTTTAAATCTCGATTTTCACCTTTAAAAATTCTCGATCATCAGTTGTAAAACTCTATTTTTTTTTGCTTCAAAATCCCAATTTTTGGTTTTAAAAATTCGGATTTCTATGATTTCTGTGCCAAAATCTACAACAGAAAATTCCAGAACCGTTCCAAAACTACCTCCTTTTTACAGCAAATTTTTGGTTACTGCATTTCTGTACTCCCAGTTCAATTATTTACTTTCATCTGTAAAATCTAGATTTTTAGATCTAAAATCCCGATTTCTAGCTTTAAGCTAAAAATCCTTGACTTTCAGCTGTAAAATCCTGATTTTCAGCTTCTAAAATCTCGTTTTCGGAAGCGATATACTTTTACTGTAAATTTTTGGTTACTGTATCTCTGTGGTTCAATTTTTTACATGTGCTCTTAGGTTAGGTTTTCATTTTTCGATCCGGGAAATCAGGTACCGAAGAAACTGAATTTATATTTCAGTATGACTTTATTATGAAAATGTGCTCCCACAACAGCAATATCCTAATCCCCCTTCCTCTCCGTTCCACCAGAATCTCTCAAAA</canonical>
            <polymorphic>GTCATTCTCGAGTGGAAAAATCGCAAATATTATTTGTTTTTTTTGGCATATTCAGAATCCTCGTTATGCTTCAACGGAAGCTACAAGTTCTGCCCTTTGAATATTAGCATCCCCTGTAAATCGCGTATCGAAAAGATTGCGTAACCATTCGTCTCTCTCTTTTTTCTCTATACATCGTCTAAGCTTAATCTCACTTTCTATCGTAATTCATTCTTCGGATAAATGGCATTCTGTAGAGAGAAATAGAAGGGAGGATTCATGGATGTTCAACAGCTATATGTTCGCTCTTATCAGTTTACATTTGTCTCATTTGTCTCATTTATCTTCTTTATTTTGTGTTAATTGAATGACAGAGATGAATACGATGTGTGACGTAGAACTTGCTGAATGTTAACATTATTTCTGAAATCTCGCTAAACTAACGAGGGGTTCTGATATTCAGTTTTTAAATCTCGATTTTCACCTTTAAAAATTCTCGATCATCAGTTGTAAAACTCTAYTTTTTTTTGCTTCAAAATCCCAATTTTTGGTTTTAAAAATTCGGATTTCTATGATTTCTGTGCCAAAATCTACAACAGAAAATTCCAGAACCGTTCCAAAACTACCTCCTTTTTACAGCAAATTTTTGGTTACTGCATTTCTGTACTCCCAGTTCAATTATTTACTTTCATCTGTAAAATCTAGATTTTTAGATCTAAAATCCCGATTTCTAGCTTTAAGCTAAAAATCCTTGACTTTCAGCTGTAAAATCCTGATTTTCAGCTTCTAAAATCTCGTTTTCGGAAGCGATATACTTTTACTGTAAATTTTTGGTTACTGTATCTCTGTGGTTCAATTTTTTACATGTGCTCTTAGGTTAGGTTTTCATTTTTCGATCCGGGAAATCAGGTACCGAAGAAACTGAATTTATATTTCAGTATGACTTTATTATGAAAATGTGCTCCCACAACAGCAATATCCTAATCCCCCTTCCTCTCCGTTCCACCAGAATCTCTCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGAATGACAGAGATGAATACG</pcr_primer_p1>
		<pcr_primer_p2>GTTCTGGAATTTTCTGTTGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTGAATGACAGAGATGAATACGATGTGTGACGTAGAACTTGCTGAATGTTAACATTATTTCTGAAATCTCGCTAAACTAACGAGGGGTTCTGATATTCAGTTTTTAAATCTCGATTTTCACCTTTAAAAATTCTCGATCATCAGTTGTAAAACTCTATTTTTTTTTGCTTCAAAATCCCAATTTTTGGTTTTAAAAATTCGGATTTCTATGATTTCTGTGCCAAAATCTACAACAGAAAATTCCAGAAC</canonical_amplicon>
		<polymorphic_amplicon>ATTGAATGACAGAGATGAATACGATGTGTGACGTAGAACTTGCTGAATGTTAACATTATTTCTGAAATCTCGCTAAACTAACGAGGGGTTCTGATATTCAGTTTTTAAATCTCGATTTTCACCTTTAAAAATTCTCGATCATCAGTTGTAAAACTCTAYTTTTTTTTGCTTCAAAATCCCAATTTTTGGTTTTAAAAATTCGGATTTCTATGATTTCTGTGCCAAAATCTACAACAGAAAATTCCAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28307</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>697834</contig_pos>
        <strand>+</strand>
        <context>TCAGGTTAGA[C/G]TTTTTTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCGTTGGTGCCAAATGCAAACTTTGCAAAATGCTGATTCATCAGGTTAGA</left_flank>
        <right_flank>TTTTTTTTTCATCAAATGCTAACTGCATCCGTTCAAATTGGTTTTTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTGGAAGAGCTGAATATGGCTCTATCCAATGAGCTTCAGGCTCATGCCCAACAGCAGTGATTCTGATCGATCTCTTATTTATTAATTTTTATCATATTTTGATCTGCTCGTTTCTTTGTGTATGACCTTGTTTTCTTAATGAAAAATTCGGTTTAAACAAAATGTCTCATATGGTAATATACGTACAATCGTAACACAGTATTTGCCCATTGACTATAAAAATTTACTGAGAACCTGGTTTTAGTGCAAAAATGGTTTGTGGAGATTGCGAAAAGAAGTTGGGGAAAATTGTTGGCGTGGATCCGTATCGAAACAAGAAAGTCAATCGGAATGCGGACGGAACTGGTCCCAAGACAATGACTACTAAGAATCGGCTGATTGGAGTTCAGAAAAAGTAAATTGAGAAAAAATATTGTATAATTGTGTATTCTTTTTCAGAGCTACAATCGTTGGTGCCAAATGCAAACTTTGCAAAATGCTGATTCATCAGGTTAGATTTTTTTTTTCATCAAATGCTAACTGCATCCGTTCAAATTGGTTTTTTTTCCAATAATTTTCATACTGAAATTTAAAAAACTGGTCGAGAAGTGACCCATCTTGGGATTTGATAACTATGATTTTTAACAATTGGATTTTGCAGCCAGGAAGTCACTACTGCTCCACGTGCGCATACCAGAAGGGAATTTGTGCAATGTGTGGAAAAAAGATTCTCAACACAAAAGGTCTTCGCCAAAGCATCACATAACTTCATGCAATTTGAAAATGATTCCAGTCAACACTAACTTATATTTGATCTCGTGTTCTAATCTGTGTTTCCATGCGCTTGTATATTTCTGCTAGTCCCCACTTCTCTCTTGTCAGTTTTTGAACCAAATACAGAACTATTACTAATAAACAGATCGTATTCCAATTCTAAAGACTTTTTTGAAGTAAAAGTTGTAATAGAACTCCACCTGTTCCTTGCATTTTGAACTCAATAATCTCATCCTACAGAAGT</canonical>
            <polymorphic>AAGTTGGAAGAGCTGAATATGGCTCTATCCAATGAGCTTCAGGCTCATGCCCAACAGCAGTGATTCTGATCGATCTCTTATTTATTAATTTTTATCATATTTTGATCTGCTCGTTTCTTTGTGTATGACCTTGTTTTCTTAATGAAAAATTCGGTTTAAACAAAATGTCTCATATGGTAATATACGTACAATCGTAACACAGTATTTGCCCATTGACTATAAAAATTTACTGAGAACCTGGTTTTAGTGCAAAAATGGTTTGTGGAGATTGCGAAAAGAAGTTGGGGAAAATTGTTGGCGTGGATCCGTATCGAAACAAGAAAGTCAATCGGAATGCGGACGGAACTGGTCCCAAGACAATGACTACTAAGAATCGGCTGATTGGAGTTCAGAAAAAGTAAATTGAGAAAAAATATTGTATAATTGTGTATTCTTTTTCAGAGCTACAATCGTTGGTGCCAAATGCAAACTTTGCAAAATGCTGATTCATCAGGTTAGASTTTTTTTTTCATCAAATGCTAACTGCATCCGTTCAAATTGGTTTTTTTTCCAATAATTTTCATACTGAAATTTAAAAAACTGGTCGAGAAGTGACCCATCTTGGGATTTGATAACTATGATTTTTAACAATTGGATTTTGCAGCCAGGAAGTCACTACTGCTCCACGTGCGCATACCAGAAGGGAATTTGTGCAATGTGTGGAAAAAAGATTCTCAACACAAAAGGTCTTCGCCAAAGCATCACATAACTTCATGCAATTTGAAAATGATTCCAGTCAACACTAACTTATATTTGATCTCGTGTTCTAATCTGTGTTTCCATGCGCTTGTATATTTCTGCTAGTCCCCACTTCTCTCTTGTCAGTTTTTGAACCAAATACAGAACTATTACTAATAAACAGATCGTATTCCAATTCTAAAGACTTTTTTGAAGTAAAAGTTGTAATAGAACTCCACCTGTTCCTTGCATTTTGAACTCAATAATCTCATCCTACAGAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGATTGGAGTTCAGAAAAAGTA</pcr_primer_p1>
		<pcr_primer_p2>CATAGTTATCAAATCCCAAGATG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CTGATTGGAGTTCAGAAAAAGTAAATTGAGAAAAAATATTGTATAATTGTGTATTCTTTTTCAGAGCTACAATCGTTGGTGCCAAATGCAAACTTTGCAAAATGCTGATTCATCAGGTTAGATTTTTTTTTTCATCAAATGCTAACTGCATCCGTTCAAATTGGTTTTTTTTCCAATAATTTTCATACTGAAATTTAAAAAACTGGTCGAGAAGTGACCCATCTTGGGATTTGATAACTATG</canonical_amplicon>
		<polymorphic_amplicon>CTGATTGGAGTTCAGAAAAAGTAAATTGAGAAAAAATATTGTATAATTGTGTATTCTTTTTCAGAGCTACAATCGTTGGTGCCAAATGCAAACTTTGCAAAATGCTGATTCATCAGGTTAGASTTTTTTTTTCATCAAATGCTAACTGCATCCGTTCAAATTGGTTTTTTTTCCAATAATTTTCATACTGAAATTTAAAAAACTGGTCGAGAAGTGACCCATCTTGGGATTTGATAACTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28308</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>771026</contig_pos>
        <strand>+</strand>
        <context>CGTTGGGAAG[A/G]TCTGAATCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTATCACAGGTTTATGGTAGTTAATTTGGAAGGACTCACACGTTGGGAAG</left_flank>
        <right_flank>TCTGAATCCAGGACGTTAACTATTTTCTACTGAAATCATAAAATGGGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAGTCGATTTATCTTGGTTACTTTGCAAGATATTAAAATTTTGTCACTGATGAATTATCTATGATAATTTCACCATAAGTTTATTAGTTGTCACATTTTTCATATCTTTCCCAGGAAACGAGATAATTGAGGTCAAAGTGGATATCTTAGGTGTTCTATTAGAGGAAATACGCTAGCTCTGTTTTTGTGGTTGGTCACTCTATCGTACGAAGTAATCTAACAAAATATTCATGTCTTTCGAAAATAAATATGCTTCTTTAGTTTCGATTATTTCAGGTTTTATTTGGTTACGGGCAGCATACCGTAAAACCTGTAATAGAAGGGCCCCCGAGCTGTCAAGTTTGGGCTTAACTATCTCAATTCCTATGCAAGATATCAAAAATGTGTCACCTGATAAAATTGCTTTCATATTCATATCGGCTCAAATTTAAAATGTAGGGTGATCTTCTATCACAGGTTTATGGTAGTTAATTTGGAAGGACTCACACGTTGGGAAGGTCTGAATCCAGGACGTTAACTATTTTCTACTGAAATCATAAAATGGGGAAAATTTTCAATTCGGTATTGTAGATGTTCAAATTATTCGTTCATCACTAGTCGAATTGAAATACCGTCTCAATATCCAATTAAGGCTACAGAATTCTGCAGTATCATTTTTTCTTTCAATCAATCTCCTATATCTTCTTCTACCCAAAAGAAAATTTCTTATCTCATTTGTTAGAAGCCAGAAATATATCTTCATCGTTGATATTCTGAACTTATTGTCGAATGAAAAAAAGTGGAACCTGAAAAATTTCGCGGGCGGCGTCCCGGTCAATTTTCGAGGCCTTGCCCCAAAAACACTACGGTAGTAAACGAAACTTATTTCTGTGAATTTAGTGGGATTTTCTGGACAAAATTTATGTTTCTTGGTATGAAAATGATCGCTAGCATCTCTAGAATCTGTTTTTCAGCGAAAAACCGAACTTAATTGCAAAAGTAGCTCGAACGAGGCGAAA</canonical>
            <polymorphic>TTGAGTCGATTTATCTTGGTTACTTTGCAAGATATTAAAATTTTGTCACTGATGAATTATCTATGATAATTTCACCATAAGTTTATTAGTTGTCACATTTTTCATATCTTTCCCAGGAAACGAGATAATTGAGGTCAAAGTGGATATCTTAGGTGTTCTATTAGAGGAAATACGCTAGCTCTGTTTTTGTGGTTGGTCACTCTATCGTACGAAGTAATCTAACAAAATATTCATGTCTTTCGAAAATAAATATGCTTCTTTAGTTTCGATTATTTCAGGTTTTATTTGGTTACGGGCAGCATACCGTAAAACCTGTAATAGAAGGGCCCCCGAGCTGTCAAGTTTGGGCTTAACTATCTCAATTCCTATGCAAGATATCAAAAATGTGTCACCTGATAAAATTGCTTTCATATTCATATCGGCTCAAATTTAAAATGTAGGGTGATCTTCTATCACAGGTTTATGGTAGTTAATTTGGAAGGACTCACACGTTGGGAAGRTCTGAATCCAGGACGTTAACTATTTTCTACTGAAATCATAAAATGGGGAAAATTTTCAATTCGGTATTGTAGATGTTCAAATTATTCGTTCATCACTAGTCGAATTGAAATACCGTCTCAATATCCAATTAAGGCTACAGAATTCTGCAGTATCATTTTTTCTTTCAATCAATCTCCTATATCTTCTTCTACCCAAAAGAAAATTTCTTATCTCATTTGTTAGAAGCCAGAAATATATCTTCATCGTTGATATTCTGAACTTATTGTCGAATGAAAAAAAGTGGAACCTGAAAAATTTCGCGGGCGGCGTCCCGGTCAATTTTCGAGGCCTTGCCCCAAAAACACTACGGTAGTAAACGAAACTTATTTCTGTGAATTTAGTGGGATTTTCTGGACAAAATTTATGTTTCTTGGTATGAAAATGATCGCTAGCATCTCTAGAATCTGTTTTTCAGCGAAAAACCGAACTTAATTGCAAAAGTAGCTCGAACGAGGCGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAGGGTGATCTTCTATCACAG</pcr_primer_p1>
		<pcr_primer_p2>TAGGAGATTGATTGAAAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TGTAGGGTGATCTTCTATCACAGGTTTATGGTAGTTAATTTGGAAGGACTCACACGTTGGGAAGGTCTGAATCCAGGACGTTAACTATTTTCTACTGAAATCATAAAATGGGGAAAATTTTCAATTCGGTATTGTAGATGTTCAAATTATTCGTTCATCACTAGTCGAATTGAAATACCGTCTCAATATCCAATTAAGGCTACAGAATTCTGCAGTATCATTTTTTCTTTCAATCAATCTCCTA</canonical_amplicon>
		<polymorphic_amplicon>TGTAGGGTGATCTTCTATCACAGGTTTATGGTAGTTAATTTGGAAGGACTCACACGTTGGGAAGRTCTGAATCCAGGACGTTAACTATTTTCTACTGAAATCATAAAATGGGGAAAATTTTCAATTCGGTATTGTAGATGTTCAAATTATTCGTTCATCACTAGTCGAATTGAAATACCGTCTCAATATCCAATTAAGGCTACAGAATTCTGCAGTATCATTTTTTCTTTCAATCAATCTCCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28309</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>779990</contig_pos>
        <strand>+</strand>
        <context>AATTGGGCTT[C/T]AGAGAAACAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGATCTTCAGCTTCGTATCCTTCATCTGCATCCGATGCTAATTGGGCTT</left_flank>
        <right_flank>AGAGAAACAAGGCTTATTATTACTCACCGAGAAGATTCTCCATTGCAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCTCGTTTCTGGTGTAGGAAGACACGCTTTGCAAGTTCTAAAGTTTCCGATAGAGCCATCATCTTCTTTTTTTGGTCTTCCATGGAATGGCGCACCTGAAATTGAATTTTTATATATCCGAAGTTCGGAAAAATATTTTTGTATTTTACAATTATCATTGAAGTATTTCAGCATCTATTAATCAAGTACCACACTCACTTGTACCATGGTATCAATAGCTTCATGTACTTCTTGTAGAATATGAGCGCCTTCTTCACGGTCTTTTATTCCACTTTTGCACTTCTCCTTGTAATCGAAATCTCCCTCGTTCACAAATTTCATCATGTCACTGATTACGTTTCGTGCCTGACAAATGGAAATTTTTAATACAAATCATGATCGGTAAATACTTACAGATACAAAATTTGAAATTCTCTTCAATAAATCCTCGGAATCTACCTCTAGAGCTTGATCTTCAGCTTCGTATCCTTCATCTGCATCCGATGCTAATTGGGCTTTAGAGAAACAAGGCTTATTATTACTCACCGAGAAGATTCTCCATTGCAGTTGTGCTTTGTGAAGAAAAAACACCTCGAGTTTTGAAAATTTGAATGCATCGCTTCATAACGTCTTTCACTTTATCTTGCTTTCTAGAAATTTTTAATTTGCTTTTTTCGGTCAATATGAAAACACTACCTTCCTGTCGCCACAGCAGTGAGCACAGCTGGCTGAAAAGCTGGAATTATGGTGTCAGCATGTTTTATTTTAGCTTTCTGCACGACATCATTCATGACGTAGAACAAAGCGATTCGCTTACTATCTGTTCCAGCTGAAACTTTGGAAATTTTAAAACTGAGTATTTAAAATGTTTATTTTTTAAATTACCTGTTTTGAAGCAATTGAGCCATCCGTCAACAATCAAGTCTATCGATGCTTTGTCTTTATAGTGCATGATCCATAGTGACATAGTCTCAATAGCCTCTTGGGTTGGATTTTTGATCTGTAACATTTGCGATTGA</canonical>
            <polymorphic>CTTCTCGTTTCTGGTGTAGGAAGACACGCTTTGCAAGTTCTAAAGTTTCCGATAGAGCCATCATCTTCTTTTTTTGGTCTTCCATGGAATGGCGCACCTGAAATTGAATTTTTATATATCCGAAGTTCGGAAAAATATTTTTGTATTTTACAATTATCATTGAAGTATTTCAGCATCTATTAATCAAGTACCACACTCACTTGTACCATGGTATCAATAGCTTCATGTACTTCTTGTAGAATATGAGCGCCTTCTTCACGGTCTTTTATTCCACTTTTGCACTTCTCCTTGTAATCGAAATCTCCCTCGTTCACAAATTTCATCATGTCACTGATTACGTTTCGTGCCTGACAAATGGAAATTTTTAATACAAATCATGATCGGTAAATACTTACAGATACAAAATTTGAAATTCTCTTCAATAAATCCTCGGAATCTACCTCTAGAGCTTGATCTTCAGCTTCGTATCCTTCATCTGCATCCGATGCTAATTGGGCTTYAGAGAAACAAGGCTTATTATTACTCACCGAGAAGATTCTCCATTGCAGTTGTGCTTTGTGAAGAAAAAACACCTCGAGTTTTGAAAATTTGAATGCATCGCTTCATAACGTCTTTCACTTTATCTTGCTTTCTAGAAATTTTTAATTTGCTTTTTTCGGTCAATATGAAAACACTACCTTCCTGTCGCCACAGCAGTGAGCACAGCTGGCTGAAAAGCTGGAATTATGGTGTCAGCATGTTTTATTTTAGCTTTCTGCACGACATCATTCATGACGTAGAACAAAGCGATTCGCTTACTATCTGTTCCAGCTGAAACTTTGGAAATTTTAAAACTGAGTATTTAAAATGTTTATTTTTTAAATTACCTGTTTTGAAGCAATTGAGCCATCCGTCAACAATCAAGTCTATCGATGCTTTGTCTTTATAGTGCATGATCCATAGTGACATAGTCTCAATAGCCTCTTGGGTTGGATTTTTGATCTGTAACATTTGCGATTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTACCTCTAGAGCTTGATCTTCA</pcr_primer_p1>
		<pcr_primer_p2>GACAGGAAGGTAGTGTTTTCATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTACCTCTAGAGCTTGATCTTCAGCTTCGTATCCTTCATCTGCATCCGATGCTAATTGGGCTTTAGAGAAACAAGGCTTATTATTACTCACCGAGAAGATTCTCCATTGCAGTTGTGCTTTGTGAAGAAAAAACACCTCGAGTTTTGAAAATTTGAATGCATCGCTTCATAACGTCTTTCACTTTATCTTGCTTTCTAGAAATTTTTAATTTGCTTTTTTCGGTCAATATGAAAACACTACCTTCCTGTC</canonical_amplicon>
		<polymorphic_amplicon>CTACCTCTAGAGCTTGATCTTCAGCTTCGTATCCTTCATCTGCATCCGATGCTAATTGGGCTTYAGAGAAACAAGGCTTATTATTACTCACCGAGAAGATTCTCCATTGCAGTTGTGCTTTGTGAAGAAAAAACACCTCGAGTTTTGAAAATTTGAATGCATCGCTTCATAACGTCTTTCACTTTATCTTGCTTTCTAGAAATTTTTAATTTGCTTTTTTCGGTCAATATGAAAACACTACCTTCCTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28310</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>795406</contig_pos>
        <strand></strand>
        <context>attttttttc[T/A]gatttatctt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ACTGTACACGGCGATTAATTTTGGAAATCGAGGTTTTCTAATTTTTTTTC</left_flank>
        <right_flank>GATTTATCTTTTCCCGATACAGTGGAAAATCAGCTTTTTTGGCATTAAAA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTTTAGTACTTTTTTACTTCAATGACGTCGATCAGTCTTCAAAAAAAAAAAAAGAAATAGCAATGAGTAGCGCACCCAAAGCTTCCTGGCAGTAGGCAGCATCTTCCTTCCAGCATCAAGCATCCAACGTCGCTTTCCTTGCCGATCCTCCGCGAATCCCGGTAATCCTCGTCGAGCTTCGAAGTAGAAAGGCCAGTGGTCCTCGTAGGATCGGATCGGATCCCTTGCCATCCCAGCTGCCCTGGAACCACGTTGCAACTCGGACTCCTCAATGACTCCTCGGCCCGACTTCTGGTTGATTTCTGCGGCTTATATAGCCCCTGTAGATCAGATCTAGAGATAAGATAAGAAAAAAGCATGAAAGTTGTCAGCACACGCGGAAATTCTGATTTTTTTCTAATAAAACAAAATAAATTATTTATGAAAATGGTAGATTTACGTTGGAAAACTGTACACGGCGATTAATTTTGGAAATCGAGGTTTTCTAATTTTTTTTCTGATTTATCTTTTCCCGATACAGTGGAAAATCAGCTTTTTTGGCATTAAAAATTCTGGGTCAACAATTTTTTTTTTAAATAGGTAGAGATTGTAGAGAATTTAAAAACAAATCAAAAATGATTCAAAAAACGTCTGATTTGACCCAAAAATAAAAGCCCTGATAGATTTTCTAAAAAAGCAACTGAATTTTGTCATTTTTGAAGGGTTTTTGAAATTTTCAAAAAATCTGTTAAACTATTCGGCAAGGAAAGCGACGTTGGATGCTTGATGCTGGAAGGAAGATGCTGCCTACTGCCAGGAAGCTTTGGGTGCGCTACTCATTGCTATTTCTTTTTTTTTTTTTTGAAGACTGATCGACGTCATTGAAGTAAAAAAGTACTAAAAGGCCTCGGGTCGCCATTGTTTGGGGTTCATGGCTAGGTGTTTATCACTGAACGTCCCCCTTTTACCAAATGACCGAAATCAAATTTTAAAAGAAAATGAAATAGCAATAGATAGCG</canonical>
            <polymorphic>CCTTTTAGTACTTTTTTACTTCAATGACGTCGATCAGTCTTCAAAAAAAAAAAAAGAAATAGCAATGAGTAGCGCACCCAAAGCTTCCTGGCAGTAGGCAGCATCTTCCTTCCAGCATCAAGCATCCAACGTCGCTTTCCTTGCCGATCCTCCGCGAATCCCGGTAATCCTCGTCGAGCTTCGAAGTAGAAAGGCCAGTGGTCCTCGTAGGATCGGATCGGATCCCTTGCCATCCCAGCTGCCCTGGAACCACGTTGCAACTCGGACTCCTCAATGACTCCTCGGCCCGACTTCTGGTTGATTTCTGCGGCTTATATAGCCCCTGTAGATCAGATCTAGAGATAAGATAAGAAAAAAGCATGAAAGTTGTCAGCACACGCGGAAATTCTGATTTTTTTCTAATAAAACAAAATAAATTATTTATGAAAATGGTAGATTTACGTTGGAAAACTGTACACGGCGATTAATTTTGGAAATCGAGGTTTTCTAATTTTTTTTCWGATTTATCTTTTCCCGATACAGTGGAAAATCAGCTTTTTTGGCATTAAAAATTCTGGGTCAACAATTTTTTTTTTAAATAGGTAGAGATTGTAGAGAATTTAAAAACAAATCAAAAATGATTCAAAAAACGTCTGATTTGACCCAAAAATAAAAGCCCTGATAGATTTTCTAAAAAAGCAACTGAATTTTGTCATTTTTGAAGGGTTTTTGAAATTTTCAAAAAATCTGTTAAACTATTCGGCAAGGAAAGCGACGTTGGATGCTTGATGCTGGAAGGAAGATGCTGCCTACTGCCAGGAAGCTTTGGGTGCGCTACTCATTGCTATTTCTTTTTTTTTTTTTTGAAGACTGATCGACGTCATTGAAGTAAAAAAGTACTAAAAGGCCTCGGGTCGCCATTGTTTGGGGTTCATGGCTAGGTGTTTATCACTGAACGTCCCCCTTTTACCAAATGACCGAAATCAAATTTTAAAAGAAAATGAAATAGCAATAGATAGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTACACGGCGATTAATTT</pcr_primer_p1>
		<pcr_primer_p2>GCCGAATAGTTTAACAGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>293</pcr_amplicon_size>
		<canonical_amplicon>CTGTACACGGCGATTAATTTTGGAAATCGAGGTTTTCTAATTTTTTTTCTGATTTATCTTTTCCCGATACAGTGGAAAATCAGCTTTTTTGGCATTAAAAATTCTGGGTCAACAATTTTTTTTTTAAATAGGTAGAGATTGTAGAGAATTTAAAAACAAATCAAAAATGATTCAAAAAACGTCTGATTTGACCCAAAAATAAAAGCCCTGATAGATTTTCTAAAAAAGCAACTGAATTTTGTCATTTTTGAAGGGTTTTTGAAATTTTCAAAAAATCTGTTAAACTATTCGGC</canonical_amplicon>
		<polymorphic_amplicon>CTGTACACGGCGATTAATTTTGGAAATCGAGGTTTTCTAATTTTTTTTCWGATTTATCTTTTCCCGATACAGTGGAAAATCAGCTTTTTTGGCATTAAAAATTCTGGGTCAACAATTTTTTTTTTAAATAGGTAGAGATTGTAGAGAATTTAAAAACAAATCAAAAATGATTCAAAAAACGTCTGATTTGACCCAAAAATAAAAGCCCTGATAGATTTTCTAAAAAAGCAACTGAATTTTGTCATTTTTGAAGGGTTTTTGAAATTTTCAAAAAATCTGTTAAACTATTCGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28311</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>811848</contig_pos>
        <strand>+</strand>
        <context>TAATTGAAGC[C/G]TTGTAACATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AACTAACGTCATTCTATCAAGACATAAAGTACATTGTCGCTAATTGAAGC</left_flank>
        <right_flank>TTGTAACATAAGAATTATCTATTTTTGGGGTGAATTTATGAACATTACTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCATATCAATGTCATTATTATTTTCAGTGGGCGGAGCTTCAGTTATAAACGAATCATTATGAATCAGTTTTTGCTCTTTTCCAGAATAATTATCAGTGGGAGAGCCACCCATTTGAAAAAGAGAATCCGGATGTTTGCACCGAAGATGACGGATAAAACCACTAGATCCATTGTCAATTTTGTAGACTTTCACACAAAATCGACATCGAATCATGTTCTTTTGATCAGTTGGAAGAGAGTAGAGATTGATATGTGACATTTCTAAATTGAAAAGAAAGTTTAGAATCGGAAAAAGAAGCGGAGACGAATGGAAAAATAAAACAGATGGATCATAAAAAACGGAGAAAAAAACAGGTGATAACTGAATTATTACTTTGGAATTCGTAGGAATATTTTTGAAGTGTTTGGAGTCAACGAATGAAGAGAAAGTGTGGAATTTCGAATAGATAACTAACGTCATTCTATCAAGACATAAAGTACATTGTCGCTAATTGAAGCCTTGTAACATAAGAATTATCTATTTTTGGGGTGAATTTATGAACATTACTAATTGGAACATTTGAAAGACAGTTCAGAAAATCGAGAATTGACAGCCATCATTTTTTGACTGAATGCTCAAAAATTATTTTTGCTAAAGTGGGCTAGCCCATCTTAAAAATTGCCGGAGTATCTGTGAATCCGAGTAAATGAAAACATTTTTAGGTTACGGTAGTTTTCTTTGTGGGACTTTCAGCCACGGCCACCAGCGTTTCTCGTCCACAGCTCCGATTTTTCAAACAATCAAAATACCAAAAGACGTTTTCCCCTTTTCTGAAAGTCCAGAAATAAGAGATCACATGAGACTGAATGTGAATATGGTTTATCAAAAAGTACAGAGGACAGAATGATCGGATGGTTTTCTCTGTGTCTCCATTCAATCCATTGAGACTCACTTTATGATAATCATGGGAATCGCATCAAATGGATAGAGAAGAGAAGAAGACAGCACACAAAAGGATT</canonical>
            <polymorphic>TCCATATCAATGTCATTATTATTTTCAGTGGGCGGAGCTTCAGTTATAAACGAATCATTATGAATCAGTTTTTGCTCTTTTCCAGAATAATTATCAGTGGGAGAGCCACCCATTTGAAAAAGAGAATCCGGATGTTTGCACCGAAGATGACGGATAAAACCACTAGATCCATTGTCAATTTTGTAGACTTTCACACAAAATCGACATCGAATCATGTTCTTTTGATCAGTTGGAAGAGAGTAGAGATTGATATGTGACATTTCTAAATTGAAAAGAAAGTTTAGAATCGGAAAAAGAAGCGGAGACGAATGGAAAAATAAAACAGATGGATCATAAAAAACGGAGAAAAAAACAGGTGATAACTGAATTATTACTTTGGAATTCGTAGGAATATTTTTGAAGTGTTTGGAGTCAACGAATGAAGAGAAAGTGTGGAATTTCGAATAGATAACTAACGTCATTCTATCAAGACATAAAGTACATTGTCGCTAATTGAAGCSTTGTAACATAAGAATTATCTATTTTTGGGGTGAATTTATGAACATTACTAATTGGAACATTTGAAAGACAGTTCAGAAAATCGAGAATTGACAGCCATCATTTTTTGACTGAATGCTCAAAAATTATTTTTGCTAAAGTGGGCTAGCCCATCTTAAAAATTGCCGGAGTATCTGTGAATCCGAGTAAATGAAAACATTTTTAGGTTACGGTAGTTTTCTTTGTGGGACTTTCAGCCACGGCCACCAGCGTTTCTCGTCCACAGCTCCGATTTTTCAAACAATCAAAATACCAAAAGACGTTTTCCCCTTTTCTGAAAGTCCAGAAATAAGAGATCACATGAGACTGAATGTGAATATGGTTTATCAAAAAGTACAGAGGACAGAATGATCGGATGGTTTTCTCTGTGTCTCCATTCAATCCATTGAGACTCACTTTATGATAATCATGGGAATCGCATCAAATGGATAGAGAAGAGAAGAAGACAGCACACAAAAGGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>393 237 96 88 68 48 37 23 6 4</canonical_bands>
                <polymorphic_bands>489 237 88 68 48 37 23 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCGTAGGAATATTTTTGAAGTG</pcr_primer_p1>
		<pcr_primer_p2>AATAATTTTTGAGCATTCAGTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTCGTAGGAATATTTTTGAAGTGTTTGGAGTCAACGAATGAAGAGAAAGTGTGGAATTTCGAATAGATAACTAACGTCATTCTATCAAGACATAAAGTACATTGTCGCTAATTGAAGCCTTGTAACATAAGAATTATCTATTTTTGGGGTGAATTTATGAACATTACTAATTGGAACATTTGAAAGACAGTTCAGAAAATCGAGAATTGACAGCCATCATTTTTTGACTGAATGCTCAAAAATTATT</canonical_amplicon>
		<polymorphic_amplicon>TTCGTAGGAATATTTTTGAAGTGTTTGGAGTCAACGAATGAAGAGAAAGTGTGGAATTTCGAATAGATAACTAACGTCATTCTATCAAGACATAAAGTACATTGTCGCTAATTGAAGCSTTGTAACATAAGAATTATCTATTTTTGGGGTGAATTTATGAACATTACTAATTGGAACATTTGAAAGACAGTTCAGAAAATCGAGAATTGACAGCCATCATTTTTTGACTGAATGCTCAAAAATTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28312</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>819477</contig_pos>
        <strand>+</strand>
        <context>ACAAAGGGAA[C/G]TAAACCAACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAATCCGTTGATCCAGACAGAAGAAACTACTGTAGAAAATACAAAGGGAA</left_flank>
        <right_flank>TAAACCAACTGGAAAGAAGAATAACGTTATAAGAATTCGTAGGAAATTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAACTAAAAAAAAACACAGCTACAGAAAATCTAGTTTCTTGAATAGATGTCAGAGAAAGACAACAAGAAATGGTAACAGATGAAAGTTCAATTTGAAAACCGTTCAGATGCTCAAATTCTAGATTTGTGGGGCAATTGATGAAAGATTGAGAACATATCACTAGTTGTGTAGATTGCAGTGCTGGCTATACATACTAACTGAACGAACACTCATATTTTGTTCTGTTGCAGTGGTAAAATGGTAATCGTCGTGAACCCCCACTCTTCCAGTTGAGAAGGAATGGTTTGCTGCATCCTCATCGAGTTACGTAAGCAAGATGGCAAGCACCGATGTTGAAAGACTTCTCAGGTGGTTTCTCTGACTAAGCAATCACCACAACCAGAAGAATTTCAGACAAGAACGAATTAAACCAGAAGATTTGCTTACTGATGGACCCAACAATCGTCTCAATCCGTTGATCCAGACAGAAGAAACTACTGTAGAAAATACAAAGGGAACTAAACCAACTGGAAAGAAGAATAACGTTATAAGAATTCGTAGGAAATTGATAATCACAAAACATGAGTAAGAATTAAAATTTCCATTCAAAAGATCTAACTAGATTTCGAGTAGCCAGATATACCGTAATTCCTCTATTAGAAACCTACACAAGTCGTCGACTTTGAGCTCTATCATCTCGATTCCTGTGAAAGATATCAAAAAGTGGTTAACTGACAAGATATTTTTGAAATTATGATAAATCTTTTGTTAGTTGGCCATTTTGTGATATCTCTTACAGAAAATGAGAAATATGGGCTCGAAGTTGACGATTTGGGTGGGCTTCTACATATTACAGTAAATACGGTAGGCTTATTACTTCGAATTCAAATCATACTTGCGAAATTCCGGGCCGGCCCGCTGTTTGTACGTAAGCTGATTTTTTTGAATTTTTTTTCGAAAATTTTAAAATTTGTTTAAAAATTTAATCAAAAACTCTAAATTTTTTGACTACTTTCTAC</canonical>
            <polymorphic>TAAACTAAAAAAAAACACAGCTACAGAAAATCTAGTTTCTTGAATAGATGTCAGAGAAAGACAACAAGAAATGGTAACAGATGAAAGTTCAATTTGAAAACCGTTCAGATGCTCAAATTCTAGATTTGTGGGGCAATTGATGAAAGATTGAGAACATATCACTAGTTGTGTAGATTGCAGTGCTGGCTATACATACTAACTGAACGAACACTCATATTTTGTTCTGTTGCAGTGGTAAAATGGTAATCGTCGTGAACCCCCACTCTTCCAGTTGAGAAGGAATGGTTTGCTGCATCCTCATCGAGTTACGTAAGCAAGATGGCAAGCACCGATGTTGAAAGACTTCTCAGGTGGTTTCTCTGACTAAGCAATCACCACAACCAGAAGAATTTCAGACAAGAACGAATTAAACCAGAAGATTTGCTTACTGATGGACCCAACAATCGTCTCAATCCGTTGATCCAGACAGAAGAAACTACTGTAGAAAATACAAAGGGAASTAAACCAACTGGAAAGAAGAATAACGTTATAAGAATTCGTAGGAAATTGATAATCACAAAACATGAGTAAGAATTAAAATTTCCATTCAAAAGATCTAACTAGATTTCGAGTAGCCAGATATACCGTAATTCCTCTATTAGAAACCTACACAAGTCGTCGACTTTGAGCTCTATCATCTCGATTCCTGTGAAAGATATCAAAAAGTGGTTAACTGACAAGATATTTTTGAAATTATGATAAATCTTTTGTTAGTTGGCCATTTTGTGATATCTCTTACAGAAAATGAGAAATATGGGCTCGAAGTTGACGATTTGGGTGGGCTTCTACATATTACAGTAAATACGGTAGGCTTATTACTTCGAATTCAAATCATACTTGCGAAATTCCGGGCCGGCCCGCTGTTTGTACGTAAGCTGATTTTTTTGAATTTTTTTTCGAAAATTTTAAAATTTGTTTAAAAATTTAATCAAAAACTCTAAATTTTTTGACTACTTTCTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGTTGAAAGACTTCTCAGGT</pcr_primer_p1>
		<pcr_primer_p2>TTTAATTCTTACTCATGTTTTGTGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATGTTGAAAGACTTCTCAGGTGGTTTCTCTGACTAAGCAATCACCACAACCAGAAGAATTTCAGACAAGAACGAATTAAACCAGAAGATTTGCTTACTGATGGACCCAACAATCGTCTCAATCCGTTGATCCAGACAGAAGAAACTACTGTAGAAAATACAAAGGGAACTAAACCAACTGGAAAGAAGAATAACGTTATAAGAATTCGTAGGAAATTGATAATCACAAAACATGAGTAAGAATTAAA</canonical_amplicon>
		<polymorphic_amplicon>GATGTTGAAAGACTTCTCAGGTGGTTTCTCTGACTAAGCAATCACCACAACCAGAAGAATTTCAGACAAGAACGAATTAAACCAGAAGATTTGCTTACTGATGGACCCAACAATCGTCTCAATCCGTTGATCCAGACAGAAGAAACTACTGTAGAAAATACAAAGGGAASTAAACCAACTGGAAAGAAGAATAACGTTATAAGAATTCGTAGGAAATTGATAATCACAAAACATGAGTAAGAATTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28313</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>871660</contig_pos>
        <strand>+</strand>
        <context>GGCAGAAATT[C/G]AAAAAAATAT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGAGTTAGATATAACACTGTGTTTAGAAAAGGAAGAAGGCGGCAGAAATT</left_flank>
        <right_flank>AAAAAAATATTGGTGATGGTTTTGTTTGCTCCCACAATAGGAATAGCGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCCATGGAATTTTGAGAACCAGAGAGGAGAGATAGCCGTACTTGAGCTTTATTGGCAAATCAAAATCATCTAGAGCCGTTTCCTTGACTTGCAAATTGTCGAGTTTCACATCTCCTGAAAATTATATGATTGGGAAACTTCCTGATACCGTTGTCCATGAGAAGAAGACTTACCTCCCCAAATTCCGATATTAAGTTGTGAAGAGTCCAAATTATCGACAAAGTCGCCAAGGAACCTGTTGAGCAGGTCGGCGACCAGCGATTCAAAAACCATCCTGTAAGATTAACCGTTGCAGATAAGCATAGAGAAAAATTGAACAGAAAATGTTATTTTACGATCCAAGGGAAAGCATAATAAAATTGGTGGAAAAACAATTTTTCGCAGAAGAAGATGGAAAGAAGAAGAATAATAGGAAAGTGTACAGAAGATGATGCGTAAACAAAACCGAGAGTTAGATATAACACTGTGTTTAGAAAAGGAAGAAGGCGGCAGAAATTAAAAAAAATATTGGTGATGGTTTTGTTTGCTCCCACAATAGGAATAGCGGAGGAGGTGAGTTATAGACAAAATGGAAAGTTATACTACTTTTTGACATGGAATTAGGGTAATTTTTAATTTCAGATGGCTGCGGAAAATATGACTAACGGTACTACGCGGAGCTGCGGCGCAGGTCCATAAAAATTATATATTATTTATTCTCGTTAGTGCAGGTATAAAACGCTGGAAAATGGTTTCTACTAACACCTTGTATCATAGAAAAACTCCTTATCGAAGCATTTCGTTGATATTTTGTACTTCTTTCAAAGGAGGTCATTGAACTCAACAATTAAACTGACGTGGTTTCTAAATAAGCAGGGATGCTCGGAACGGAATTTTTCCGAAGCGTTCCGATCAAATTTTTGATCTTTTGAGATTACGCGTAGTAGCTACGGTATTTTGAAGGCGCACGCCACAATCTCCCTTGCGCGTCTCGAGTGGAGTTACGTTTTGGGAGTTTT</canonical>
            <polymorphic>CTTCCATGGAATTTTGAGAACCAGAGAGGAGAGATAGCCGTACTTGAGCTTTATTGGCAAATCAAAATCATCTAGAGCCGTTTCCTTGACTTGCAAATTGTCGAGTTTCACATCTCCTGAAAATTATATGATTGGGAAACTTCCTGATACCGTTGTCCATGAGAAGAAGACTTACCTCCCCAAATTCCGATATTAAGTTGTGAAGAGTCCAAATTATCGACAAAGTCGCCAAGGAACCTGTTGAGCAGGTCGGCGACCAGCGATTCAAAAACCATCCTGTAAGATTAACCGTTGCAGATAAGCATAGAGAAAAATTGAACAGAAAATGTTATTTTACGATCCAAGGGAAAGCATAATAAAATTGGTGGAAAAACAATTTTTCGCAGAAGAAGATGGAAAGAAGAAGAATAATAGGAAAGTGTACAGAAGATGATGCGTAAACAAAACCGAGAGTTAGATATAACACTGTGTTTAGAAAAGGAAGAAGGCGGCAGAAATTSAAAAAAATATTGGTGATGGTTTTGTTTGCTCCCACAATAGGAATAGCGGAGGAGGTGAGTTATAGACAAAATGGAAAGTTATACTACTTTTTGACATGGAATTAGGGTAATTTTTAATTTCAGATGGCTGCGGAAAATATGACTAACGGTACTACGCGGAGCTGCGGCGCAGGTCCATAAAAATTATATATTATTTATTCTCGTTAGTGCAGGTATAAAACGCTGGAAAATGGTTTCTACTAACACCTTGTATCATAGAAAAACTCCTTATCGAAGCATTTCGTTGATATTTTGTACTTCTTTCAAAGGAGGTCATTGAACTCAACAATTAAACTGACGTGGTTTCTAAATAAGCAGGGATGCTCGGAACGGAATTTTTCCGAAGCGTTCCGATCAAATTTTTGATCTTTTGAGATTACGCGTAGTAGCTACGGTATTTTGAAGGCGCACGCCACAATCTCCCTTGCGCGTCTCGAGTGGAGTTACGTTTTGGGAGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>215 213 193 171 116 92</canonical_bands>
                <polymorphic_bands>329 215 193 171 92</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAGAAGATGGAAAGAAGAAGA</pcr_primer_p1>
		<pcr_primer_p2>CAGCCATCTGAAATTAAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAAGAAGATGGAAAGAAGAAGAATAATAGGAAAGTGTACAGAAGATGATGCGTAAACAAAACCGAGAGTTAGATATAACACTGTGTTTAGAAAAGGAAGAAGGCGGCAGAAATTAAAAAAAATATTGGTGATGGTTTTGTTTGCTCCCACAATAGGAATAGCGGAGGAGGTGAGTTATAGACAAAATGGAAAGTTATACTACTTTTTGACATGGAATTAGGGTAATTTTTAATTTCAGATGGCTG</canonical_amplicon>
		<polymorphic_amplicon>AGAAGAAGATGGAAAGAAGAAGAATAATAGGAAAGTGTACAGAAGATGATGCGTAAACAAAACCGAGAGTTAGATATAACACTGTGTTTAGAAAAGGAAGAAGGCGGCAGAAATTSAAAAAAATATTGGTGATGGTTTTGTTTGCTCCCACAATAGGAATAGCGGAGGAGGTGAGTTATAGACAAAATGGAAAGTTATACTACTTTTTGACATGGAATTAGGGTAATTTTTAATTTCAGATGGCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28314</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>872076</contig_pos>
        <strand>+</strand>
        <context>TCTTTTGAGA[C/T]TACGCGTAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAACGGAATTTTTCCGAAGCGTTCCGATCAAATTTTTGATCTTTTGAGA</left_flank>
        <right_flank>TACGCGTAGTAGCTACGGTATTTTGAAGGCGCACGCCACAATCTCCCTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTGTACAGAAGATGATGCGTAAACAAAACCGAGAGTTAGATATAACACTGTGTTTAGAAAAGGAAGAAGGCGGCAGAAATTAAAAAAAATATTGGTGATGGTTTTGTTTGCTCCCACAATAGGAATAGCGGAGGAGGTGAGTTATAGACAAAATGGAAAGTTATACTACTTTTTGACATGGAATTAGGGTAATTTTTAATTTCAGATGGCTGCGGAAAATATGACTAACGGTACTACGCGGAGCTGCGGCGCAGGTCCATAAAAATTATATATTATTTATTCTCGTTAGTGCAGGTATAAAACGCTGGAAAATGGTTTCTACTAACACCTTGTATCATAGAAAAACTCCTTATCGAAGCATTTCGTTGATATTTTGTACTTCTTTCAAAGGAGGTCATTGAACTCAACAATTAAACTGACGTGGTTTCTAAATAAGCAGGGATGCTCGGAACGGAATTTTTCCGAAGCGTTCCGATCAAATTTTTGATCTTTTGAGATTACGCGTAGTAGCTACGGTATTTTGAAGGCGCACGCCACAATCTCCCTTGCGCGTCTCGAGTGGAGTTACGTTTTGGGAGTTTTCAAATTTTTTCTGTGAATTTTTCACCAATTTTCCCATACTTGTAACCGAATTTTGAGCTCTCAATGCAATTTTCTATTTTTTTTTGTGCTTTTTGGATTGTTTGTCTGTTTGATCAAAAATATCAAAAAAAAATTCGAAAAAAAAAATTGATGGAAAAAAATCACATAAGGGTTCCCCCCTTATGTGTTTTTTGAAATTTTCAAAGCTTGTGGAATGACAGGCCCGCCGGGCCGGGCCGGGCCTCCGAAATTCGGGAAAAAGCCCGGCCCGGCCCGTTACAAGTATGAATTTTCCAACTTTTATGATAGGAAAGTAAAATTTTTGATCGAAAATCGGAATATTCCAAAATTTGTAAACTCGGAATTCTTGAAATTTCGAAAACAGACATCCTTGCTGAATAAGCATAAGCACAAAT</canonical>
            <polymorphic>AAGTGTACAGAAGATGATGCGTAAACAAAACCGAGAGTTAGATATAACACTGTGTTTAGAAAAGGAAGAAGGCGGCAGAAATTAAAAAAAATATTGGTGATGGTTTTGTTTGCTCCCACAATAGGAATAGCGGAGGAGGTGAGTTATAGACAAAATGGAAAGTTATACTACTTTTTGACATGGAATTAGGGTAATTTTTAATTTCAGATGGCTGCGGAAAATATGACTAACGGTACTACGCGGAGCTGCGGCGCAGGTCCATAAAAATTATATATTATTTATTCTCGTTAGTGCAGGTATAAAACGCTGGAAAATGGTTTCTACTAACACCTTGTATCATAGAAAAACTCCTTATCGAAGCATTTCGTTGATATTTTGTACTTCTTTCAAAGGAGGTCATTGAACTCAACAATTAAACTGACGTGGTTTCTAAATAAGCAGGGATGCTCGGAACGGAATTTTTCCGAAGCGTTCCGATCAAATTTTTGATCTTTTGAGAYTACGCGTAGTAGCTACGGTATTTTGAAGGCGCACGCCACAATCTCCCTTGCGCGTCTCGAGTGGAGTTACGTTTTGGGAGTTTTCAAATTTTTTCTGTGAATTTTTCACCAATTTTCCCATACTTGTAACCGAATTTTGAGCTCTCAATGCAATTTTCTATTTTTTTTTGTGCTTTTTGGATTGTTTGTCTGTTTGATCAAAAATATCAAAAAAAAATTCGAAAAAAAAAATTGATGGAAAAAAATCACATAAGGGTTCCCCCCTTATGTGTTTTTTGAAATTTTCAAAGCTTGTGGAATGACAGGCCCGCCGGGCCGGGCCGGGCCTCCGAAATTCGGGAAAAAGCCCGGCCCGGCCCGTTACAAGTATGAATTTTCCAACTTTTATGATAGGAAAGTAAAATTTTTGATCGAAAATCGGAATATTCCAAAATTTGTAAACTCGGAATTCTTGAAATTTCGAAAACAGACATCCTTGCTGAATAAGCATAAGCACAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTGACGTGGTTTCTAAATAA</pcr_primer_p1>
		<pcr_primer_p2>AAAATAGAAAATTGCATTGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACTGACGTGGTTTCTAAATAAGCAGGGATGCTCGGAACGGAATTTTTCCGAAGCGTTCCGATCAAATTTTTGATCTTTTGAGATTACGCGTAGTAGCTACGGTATTTTGAAGGCGCACGCCACAATCTCCCTTGCGCGTCTCGAGTGGAGTTACGTTTTGGGAGTTTTCAAATTTTTTCTGTGAATTTTTCACCAATTTTCCCATACTTGTAACCGAATTTTGAGCTCTCAATGCAATTTTCTATTTT</canonical_amplicon>
		<polymorphic_amplicon>AAACTGACGTGGTTTCTAAATAAGCAGGGATGCTCGGAACGGAATTTTTCCGAAGCGTTCCGATCAAATTTTTGATCTTTTGAGAYTACGCGTAGTAGCTACGGTATTTTGAAGGCGCACGCCACAATCTCCCTTGCGCGTCTCGAGTGGAGTTACGTTTTGGGAGTTTTCAAATTTTTTCTGTGAATTTTTCACCAATTTTCCCATACTTGTAACCGAATTTTGAGCTCTCAATGCAATTTTCTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28315</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>874871</contig_pos>
        <strand>+</strand>
        <context>TGTGAAGAAG[C/G]AAAAAAAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCGATGAATTATGGCTACTACTGCTCGGTGGGCTTGTCGTTGTGAAGAAG</left_flank>
        <right_flank>AAAAAAAAAGAAAGAGGAGATCCGTTTCCATGTGCCCTCAAGCTTCTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCACTGCAACAACCAGATGATGTCCGGTACGAATTTAAAGGGATCCGTAAATAAATAATTTCTTTGGAATCCGGACAAATAAGAATTACGAAATCCAGATAGAAAAAAAAAGAAATCCAGAATCCGGAAATTTTTGCCGTGAGTCATAAATCAGAAACAACCAGAACCTCAATCTCAAAAAATATTCATGTTATTCCTTTGATTTTAGGTATCTATCATTTGTCTTCAATTTCGTTGTAGTTGTATCAAAATTCTCTTCAGTATTCTACATTTAGCAATTTTGGAACTTTGAACCCCAAGTTCCATTTGGGGGATCTTCAGACACAACTCAATCTTACTCCCAAAAAACTCTTTTGTTGTACTCTTCGTCGCAATTATCCATGGTTTCCCTCCTCTCCGAAAAAAGAGCTCTGCTTTAGTATTTTTCGGAAATGTGCTCACTAGTGCGCGATGAATTATGGCTACTACTGCTCGGTGGGCTTGTCGTTGTGAAGAAGAAAAAAAAAAGAAAGAGGAGATCCGTTTCCATGTGCCCTCAAGCTTCTTTGTTTCCATCAACATTTCCCAAGCGTTTTTCTTCACGTTTTTATATTCCAACCACACAACCGTTCATCTATTCGATCTAGATGACAGACGAGGTTGTGGAGAAATGTATCTGCCAGATTTGTCAGTGCGGGTAAGTTCTGAATCAAATCACCTGGAAATTTAACGAAGGATACTGATTCTGATTTGATAAGATTTTTTCTTTCAATTTCTTTATTCTTTTGTCGAAAGTCAACGGTTTCAGAAGACACAAGTGTGATCATGTGGATGCTGATTTAGGATTTGGAAATGGAATTGAAGAGAATCAAACCGAATACGGGATGCAATATCCAGCAAAGCAGGCACCCAGGTTTCGTTTTTCATATTTCGGATTACTGTAATTCAGTTCGTAGAGTTAGGTTATCAACTTTCGATGAGAGCTTGTAAAATTCATCTGAACTATTTGAAAGTAAGAA</canonical>
            <polymorphic>TTCCACTGCAACAACCAGATGATGTCCGGTACGAATTTAAAGGGATCCGTAAATAAATAATTTCTTTGGAATCCGGACAAATAAGAATTACGAAATCCAGATAGAAAAAAAAAGAAATCCAGAATCCGGAAATTTTTGCCGTGAGTCATAAATCAGAAACAACCAGAACCTCAATCTCAAAAAATATTCATGTTATTCCTTTGATTTTAGGTATCTATCATTTGTCTTCAATTTCGTTGTAGTTGTATCAAAATTCTCTTCAGTATTCTACATTTAGCAATTTTGGAACTTTGAACCCCAAGTTCCATTTGGGGGATCTTCAGACACAACTCAATCTTACTCCCAAAAAACTCTTTTGTTGTACTCTTCGTCGCAATTATCCATGGTTTCCCTCCTCTCCGAAAAAAGAGCTCTGCTTTAGTATTTTTCGGAAATGTGCTCACTAGTGCGCGATGAATTATGGCTACTACTGCTCGGTGGGCTTGTCGTTGTGAAGAAGSAAAAAAAAAGAAAGAGGAGATCCGTTTCCATGTGCCCTCAAGCTTCTTTGTTTCCATCAACATTTCCCAAGCGTTTTTCTTCACGTTTTTATATTCCAACCACACAACCGTTCATCTATTCGATCTAGATGACAGACGAGGTTGTGGAGAAATGTATCTGCCAGATTTGTCAGTGCGGGTAAGTTCTGAATCAAATCACCTGGAAATTTAACGAAGGATACTGATTCTGATTTGATAAGATTTTTTCTTTCAATTTCTTTATTCTTTTGTCGAAAGTCAACGGTTTCAGAAGACACAAGTGTGATCATGTGGATGCTGATTTAGGATTTGGAAATGGAATTGAAGAGAATCAAACCGAATACGGGATGCAATATCCAGCAAAGCAGGCACCCAGGTTTCGTTTTTCATATTTCGGATTACTGTAATTCAGTTCGTAGAGTTAGGTTATCAACTTTCGATGAGAGCTTGTAAAATTCATCTGAACTATTTGAAAGTAAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCTTCAGACACAACTCAATCT</pcr_primer_p1>
		<pcr_primer_p2>AATGTTGATGGAAACAAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCTTCAGACACAACTCAATCTTACTCCCAAAAAACTCTTTTGTTGTACTCTTCGTCGCAATTATCCATGGTTTCCCTCCTCTCCGAAAAAAGAGCTCTGCTTTAGTATTTTTCGGAAATGTGCTCACTAGTGCGCGATGAATTATGGCTACTACTGCTCGGTGGGCTTGTCGTTGTGAAGAAGAAAAAAAAAAGAAAGAGGAGATCCGTTTCCATGTGCCCTCAAGCTTCTTTGTTTCCATCAACATT</canonical_amplicon>
		<polymorphic_amplicon>GATCTTCAGACACAACTCAATCTTACTCCCAAAAAACTCTTTTGTTGTACTCTTCGTCGCAATTATCCATGGTTTCCCTCCTCTCCGAAAAAAGAGCTCTGCTTTAGTATTTTTCGGAAATGTGCTCACTAGTGCGCGATGAATTATGGCTACTACTGCTCGGTGGGCTTGTCGTTGTGAAGAAGSAAAAAAAAAGAAAGAGGAGATCCGTTTCCATGTGCCCTCAAGCTTCTTTGTTTCCATCAACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28316</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>887615</contig_pos>
        <strand>+</strand>
        <context>ACTAACAGGA[A/G]AACAYTTTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGATGAATGCAACTTTCCACTTTTTGTATTATGTGTGAAACTAACAGGA</left_flank>
        <right_flank>AACATTTTTAAGAGGTCCTTTGAGAGCTTGAGAAAAAAAGTTCAGCAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGAATAAAAAAAACCAAAACGTCTTCTTCTTTTCTTTTGAATTCATTTCACATACCCTGGCATTCAGACATTGGAAGTTTGATGGGTGCCGAAGAGATCGGATTGACGGCTACACATTCAACGGTGCGCGACATGACACCAGTTCCGCAAGTCGATGAGCATGTACTCCATTCACCGGCAACTAGTCTGCAATTTTCGATTAGAAGGAAATGGCGGAAAGACAATTGAAGAAGAGAGTAGTTGAACGACTTGTACGTTTTTTAGGAATTTAGGGAATTGGAGTATTGTGTTGGGAGCTCGCAACAGCTTGGTGGGTTTATTGATGTTCAGAGTTGGTTGGCCGATAGTAACTTTTTTGATTATTAGAAAAAAATTGGAACCTACAAAATGTTTCGCCGACCGAATTTCCAAGAATTCTGTATTTTATACAGTAACGAATAGATTCTTTGATGAATGCAACTTTCCACTTTTTGTATTATGTGTGAAACTAACAGGAGAACATTTTTAAGAGGTCCTTTGAGAGCTTGAGAAAAAAAGTTCAGCAATATCGTGTAAGTAAGTGCCTAAATGGGTCAAACATTTTCAGACGAAGTTTTTCAGCGTGCGGATGAGTACGGGAGCTAGATATTCCTGCCAACTCCCAGAGGACATTTGAAAAGATTCTCTTGTCAGTTCAGATTGTCTCAAACTTCTTACCTTGGAGCCTGCCAGTCGTTGTGGTTATCCATTGATCCAAAAGTGTTTCCATCCAAATATGCTCGATCGTTCCAGTCCAAACTGAAAATTCATAATTCATTTTTTTGTTCCTCAACTTTTCTCACATTTCCTCCTTTTCCCGAATTCCCAAAAACTCTCGATTTCATGCCCTCCCAAAAACCAACCATTTTGCGTTTTGGCTCTCCCTACTTTCTAATCCCATGGTGCTCTTGTTCTTCGCGCACACCACAACGAAAAATGACAAATGAATGAGTATGTATATTCTTTTGGATCGCTCTTT</canonical>
            <polymorphic>TTTTGAATAAAAAAAACCAAAACGTCTTCTTCTTTTCTTTTGAATTCATTTCACATACCCTGGCATTCAGACATTGGAAGTTTGATGGGTGCCGAAGAGATCGGATTGACGGCTACACATTCAACGGTGCGCGACATGACACCAGTTCCGCAAGTCGATGAGCATGTACTCCATTCACCGGCAACTAGTCTGCAATTTTCGATTAGAAGGAAATGGCGGAAAGACAATTGAAGAAGAGAGTAGTTGAACGACTTGTACGTTTTTTAGGAATTTAGGGAATTGGAGTATTGTGTTGGGAGCTCGCAACAGCTTGGTGGGTTTATTGATGTTCAGAGTTGGTTGGCCGATAGTAACTTTTTTGATTATTAGAAAAAAATTGGAACCTACAAAATGTTTCGCCGACCGAATTTCCAAGAATTCTGTATTTTATACAGTAACGAATAGATTCTTTGATGAATGCAACTTTCCACTTTTTGTATTATGTGTGAAACTAACAGGARAACATTTTTAAGAGGTCCTTTGAGAGCTTGAGAAAAAAAGTTCAGCAATATCGTGTAAGTAAGTGCCTAAATGGGTCAAACATTTTCAGACGAAGTTTTTCAGCGTGCGGATGAGTACGGGAGCTAGATATTCCTGCCAACTCCCAGAGGACATTTGAAAAGATTCTCTTGTCAGTTCAGATTGTCTCAAACTTCTTACCTTGGAGCCTGCCAGTCGTTGTGGTTATCCATTGATCCAAAAGTGTTTCCATCCAAATATGCTCGATCGTTCCAGTCCAAACTGAAAATTCATAATTCATTTTTTTGTTCCTCAACTTTTCTCACATTTCCTCCTTTTCCCGAATTCCCAAAAACTCTCGATTTCATGCCCTCCCAAAAACCAACCATTTTGCGTTTTGGCTCTCCCTACTTTCTAATCCCATGGTGCTCTTGTTCTTCGCGCACACCACAACGAAAAATGACAAATGAATGAGTATGTATATTCTTTTGGATCGCTCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTTGATGAATGCAACTTT</pcr_primer_p1>
		<pcr_primer_p2>AGTTTGAGACAATCTGAACTGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTTGATGAATGCAACTTTCCACTTTTTGTATTATGTGTGAAACTAACAGGAGAACATTTTTAAGAGGTCCTTTGAGAGCTTGAGAAAAAAAGTTCAGCAATATCGTGTAAGTAAGTGCCTAAATGGGTCAAACATTTTCAGACGAAGTTTTTCAGCGTGCGGATGAGTACGGGAGCTAGATATTCCTGCCAACTCCCAGAGGACATTTGAAAAGATTCTCTTGTCAGTTCAGATTGTCTCAAACT</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTTGATGAATGCAACTTTCCACTTTTTGTATTATGTGTGAAACTAACAGGARAACATTTTTAAGAGGTCCTTTGAGAGCTTGAGAAAAAAAGTTCAGCAATATCGTGTAAGTAAGTGCCTAAATGGGTCAAACATTTTCAGACGAAGTTTTTCAGCGTGCGGATGAGTACGGGAGCTAGATATTCCTGCCAACTCCCAGAGGACATTTGAAAAGATTCTCTTGTCAGTTCAGATTGTCTCAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28317</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>887620</contig_pos>
        <strand>+</strand>
        <context>CAGGARAACA[C/T]TTTTAAGASG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAATGCAACTTTCCACTTTTTGTATTATGTGTGAAACTAACAGGAGAACA</left_flank>
        <right_flank>TTTTAAGAGGTCCTTTGAGAGCTTGAGAAAAAAAGTTCAGCAATATCGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAAAAAAAACCAAAACGTCTTCTTCTTTTCTTTTGAATTCATTTCACATACCCTGGCATTCAGACATTGGAAGTTTGATGGGTGCCGAAGAGATCGGATTGACGGCTACACATTCAACGGTGCGCGACATGACACCAGTTCCGCAAGTCGATGAGCATGTACTCCATTCACCGGCAACTAGTCTGCAATTTTCGATTAGAAGGAAATGGCGGAAAGACAATTGAAGAAGAGAGTAGTTGAACGACTTGTACGTTTTTTAGGAATTTAGGGAATTGGAGTATTGTGTTGGGAGCTCGCAACAGCTTGGTGGGTTTATTGATGTTCAGAGTTGGTTGGCCGATAGTAACTTTTTTGATTATTAGAAAAAAATTGGAACCTACAAAATGTTTCGCCGACCGAATTTCCAAGAATTCTGTATTTTATACAGTAACGAATAGATTCTTTGATGAATGCAACTTTCCACTTTTTGTATTATGTGTGAAACTAACAGGAGAACATTTTTAAGAGGTCCTTTGAGAGCTTGAGAAAAAAAGTTCAGCAATATCGTGTAAGTAAGTGCCTAAATGGGTCAAACATTTTCAGACGAAGTTTTTCAGCGTGCGGATGAGTACGGGAGCTAGATATTCCTGCCAACTCCCAGAGGACATTTGAAAAGATTCTCTTGTCAGTTCAGATTGTCTCAAACTTCTTACCTTGGAGCCTGCCAGTCGTTGTGGTTATCCATTGATCCAAAAGTGTTTCCATCCAAATATGCTCGATCGTTCCAGTCCAAACTGAAAATTCATAATTCATTTTTTTGTTCCTCAACTTTTCTCACATTTCCTCCTTTTCCCGAATTCCCAAAAACTCTCGATTTCATGCCCTCCCAAAAACCAACCATTTTGCGTTTTGGCTCTCCCTACTTTCTAATCCCATGGTGCTCTTGTTCTTCGCGCACACCACAACGAAAAATGACAAATGAATGAGTATGTATATTCTTTTGGATCGCTCTTTTTTCC</canonical>
            <polymorphic>AATAAAAAAAACCAAAACGTCTTCTTCTTTTCTTTTGAATTCATTTCACATACCCTGGCATTCAGACATTGGAAGTTTGATGGGTGCCGAAGAGATCGGATTGACGGCTACACATTCAACGGTGCGCGACATGACACCAGTTCCGCAAGTCGATGAGCATGTACTCCATTCACCGGCAACTAGTCTGCAATTTTCGATTAGAAGGAAATGGCGGAAAGACAATTGAAGAAGAGAGTAGTTGAACGACTTGTACGTTTTTTAGGAATTTAGGGAATTGGAGTATTGTGTTGGGAGCTCGCAACAGCTTGGTGGGTTTATTGATGTTCAGAGTTGGTTGGCCGATAGTAACTTTTTTGATTATTAGAAAAAAATTGGAACCTACAAAATGTTTCGCCGACCGAATTTCCAAGAATTCTGTATTTTATACAGTAACGAATAGATTCTTTGATGAATGCAACTTTCCACTTTTTGTATTATGTGTGAAACTAACAGGAGAACAYTTTTAAGAGGTCCTTTGAGAGCTTGAGAAAAAAAGTTCAGCAATATCGTGTAAGTAAGTGCCTAAATGGGTCAAACATTTTCAGACGAAGTTTTTCAGCGTGCGGATGAGTACGGGAGCTAGATATTCCTGCCAACTCCCAGAGGACATTTGAAAAGATTCTCTTGTCAGTTCAGATTGTCTCAAACTTCTTACCTTGGAGCCTGCCAGTCGTTGTGGTTATCCATTGATCCAAAAGTGTTTCCATCCAAATATGCTCGATCGTTCCAGTCCAAACTGAAAATTCATAATTCATTTTTTTGTTCCTCAACTTTTCTCACATTTCCTCCTTTTCCCGAATTCCCAAAAACTCTCGATTTCATGCCCTCCCAAAAACCAACCATTTTGCGTTTTGGCTCTCCCTACTTTCTAATCCCATGGTGCTCTTGTTCTTCGCGCACACCACAACGAAAAATGACAAATGAATGAGTATGTATATTCTTTTGGATCGCTCTTTTTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTTGATGAATGCAACTTT</pcr_primer_p1>
		<pcr_primer_p2>AGTTTGAGACAATCTGAACTGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTTGATGAATGCAACTTTCCACTTTTTGTATTATGTGTGAAACTAACAGGAGAACATTTTTAAGAGGTCCTTTGAGAGCTTGAGAAAAAAAGTTCAGCAATATCGTGTAAGTAAGTGCCTAAATGGGTCAAACATTTTCAGACGAAGTTTTTCAGCGTGCGGATGAGTACGGGAGCTAGATATTCCTGCCAACTCCCAGAGGACATTTGAAAAGATTCTCTTGTCAGTTCAGATTGTCTCAAACT</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTTGATGAATGCAACTTTCCACTTTTTGTATTATGTGTGAAACTAACAGGAGAACAYTTTTAAGAGGTCCTTTGAGAGCTTGAGAAAAAAAGTTCAGCAATATCGTGTAAGTAAGTGCCTAAATGGGTCAAACATTTTCAGACGAAGTTTTTCAGCGTGCGGATGAGTACGGGAGCTAGATATTCCTGCCAACTCCCAGAGGACATTTGAAAAGATTCTCTTGTCAGTTCAGATTGTCTCAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28318</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>887629</contig_pos>
        <strand>+</strand>
        <context>AYTTTTAAGA[C/G]GTCCTTTGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTCCACTTTTTGTATTATGTGTGAAACTAACAGGAGAACATTTTTAAGA</left_flank>
        <right_flank>GTCCTTTGAGAGCTTGAGAAAAAAAGTTCAGCAATATCGTGTAAGTAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCAAAACGTCTTCTTCTTTTCTTTTGAATTCATTTCACATACCCTGGCATTCAGACATTGGAAGTTTGATGGGTGCCGAAGAGATCGGATTGACGGCTACACATTCAACGGTGCGCGACATGACACCAGTTCCGCAAGTCGATGAGCATGTACTCCATTCACCGGCAACTAGTCTGCAATTTTCGATTAGAAGGAAATGGCGGAAAGACAATTGAAGAAGAGAGTAGTTGAACGACTTGTACGTTTTTTAGGAATTTAGGGAATTGGAGTATTGTGTTGGGAGCTCGCAACAGCTTGGTGGGTTTATTGATGTTCAGAGTTGGTTGGCCGATAGTAACTTTTTTGATTATTAGAAAAAAATTGGAACCTACAAAATGTTTCGCCGACCGAATTTCCAAGAATTCTGTATTTTATACAGTAACGAATAGATTCTTTGATGAATGCAACTTTCCACTTTTTGTATTATGTGTGAAACTAACAGGAGAACATTTTTAAGAGGTCCTTTGAGAGCTTGAGAAAAAAAGTTCAGCAATATCGTGTAAGTAAGTGCCTAAATGGGTCAAACATTTTCAGACGAAGTTTTTCAGCGTGCGGATGAGTACGGGAGCTAGATATTCCTGCCAACTCCCAGAGGACATTTGAAAAGATTCTCTTGTCAGTTCAGATTGTCTCAAACTTCTTACCTTGGAGCCTGCCAGTCGTTGTGGTTATCCATTGATCCAAAAGTGTTTCCATCCAAATATGCTCGATCGTTCCAGTCCAAACTGAAAATTCATAATTCATTTTTTTGTTCCTCAACTTTTCTCACATTTCCTCCTTTTCCCGAATTCCCAAAAACTCTCGATTTCATGCCCTCCCAAAAACCAACCATTTTGCGTTTTGGCTCTCCCTACTTTCTAATCCCATGGTGCTCTTGTTCTTCGCGCACACCACAACGAAAAATGACAAATGAATGAGTATGTATATTCTTTTGGATCGCTCTTTTTTCCTATTTTTGG</canonical>
            <polymorphic>AACCAAAACGTCTTCTTCTTTTCTTTTGAATTCATTTCACATACCCTGGCATTCAGACATTGGAAGTTTGATGGGTGCCGAAGAGATCGGATTGACGGCTACACATTCAACGGTGCGCGACATGACACCAGTTCCGCAAGTCGATGAGCATGTACTCCATTCACCGGCAACTAGTCTGCAATTTTCGATTAGAAGGAAATGGCGGAAAGACAATTGAAGAAGAGAGTAGTTGAACGACTTGTACGTTTTTTAGGAATTTAGGGAATTGGAGTATTGTGTTGGGAGCTCGCAACAGCTTGGTGGGTTTATTGATGTTCAGAGTTGGTTGGCCGATAGTAACTTTTTTGATTATTAGAAAAAAATTGGAACCTACAAAATGTTTCGCCGACCGAATTTCCAAGAATTCTGTATTTTATACAGTAACGAATAGATTCTTTGATGAATGCAACTTTCCACTTTTTGTATTATGTGTGAAACTAACAGGAGAACATTTTTAAGASGTCCTTTGAGAGCTTGAGAAAAAAAGTTCAGCAATATCGTGTAAGTAAGTGCCTAAATGGGTCAAACATTTTCAGACGAAGTTTTTCAGCGTGCGGATGAGTACGGGAGCTAGATATTCCTGCCAACTCCCAGAGGACATTTGAAAAGATTCTCTTGTCAGTTCAGATTGTCTCAAACTTCTTACCTTGGAGCCTGCCAGTCGTTGTGGTTATCCATTGATCCAAAAGTGTTTCCATCCAAATATGCTCGATCGTTCCAGTCCAAACTGAAAATTCATAATTCATTTTTTTGTTCCTCAACTTTTCTCACATTTCCTCCTTTTCCCGAATTCCCAAAAACTCTCGATTTCATGCCCTCCCAAAAACCAACCATTTTGCGTTTTGGCTCTCCCTACTTTCTAATCCCATGGTGCTCTTGTTCTTCGCGCACACCACAACGAAAAATGACAAATGAATGAGTATGTATATTCTTTTGGATCGCTCTTTTTTCCTATTTTTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AGGWCCT</site>
                <isoschizomers>
                    <enzyme>Sse8647I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTTGATGAATGCAACTTT</pcr_primer_p1>
		<pcr_primer_p2>AGTTTGAGACAATCTGAACTGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTTGATGAATGCAACTTTCCACTTTTTGTATTATGTGTGAAACTAACAGGAGAACATTTTTAAGAGGTCCTTTGAGAGCTTGAGAAAAAAAGTTCAGCAATATCGTGTAAGTAAGTGCCTAAATGGGTCAAACATTTTCAGACGAAGTTTTTCAGCGTGCGGATGAGTACGGGAGCTAGATATTCCTGCCAACTCCCAGAGGACATTTGAAAAGATTCTCTTGTCAGTTCAGATTGTCTCAAACT</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTTGATGAATGCAACTTTCCACTTTTTGTATTATGTGTGAAACTAACAGGAGAACATTTTTAAGASGTCCTTTGAGAGCTTGAGAAAAAAAGTTCAGCAATATCGTGTAAGTAAGTGCCTAAATGGGTCAAACATTTTCAGACGAAGTTTTTCAGCGTGCGGATGAGTACGGGAGCTAGATATTCCTGCCAACTCCCAGAGGACATTTGAAAAGATTCTCTTGTCAGTTCAGATTGTCTCAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28319</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>887685</contig_pos>
        <strand>+</strand>
        <context>taagtgccta[A/C]atgggtcaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGAGAGCTTGAGAAAAAAAGTTCAGCAATATCGTGTAAGTAAGTGCCTA</left_flank>
        <right_flank>ATGGGTCAAACATTTTCAGACGAAGTTTTTCAGCGTGCGGATGAGTACGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATTGGAAGTTTGATGGGTGCCGAAGAGATCGGATTGACGGCTACACATTCAACGGTGCGCGACATGACACCAGTTCCGCAAGTCGATGAGCATGTACTCCATTCACCGGCAACTAGTCTGCAATTTTCGATTAGAAGGAAATGGCGGAAAGACAATTGAAGAAGAGAGTAGTTGAACGACTTGTACGTTTTTTAGGAATTTAGGGAATTGGAGTATTGTGTTGGGAGCTCGCAACAGCTTGGTGGGTTTATTGATGTTCAGAGTTGGTTGGCCGATAGTAACTTTTTTGATTATTAGAAAAAAATTGGAACCTACAAAATGTTTCGCCGACCGAATTTCCAAGAATTCTGTATTTTATACAGTAACGAATAGATTCTTTGATGAATGCAACTTTCCACTTTTTGTATTATGTGTGAAACTAACAGGAGAACATTTTTAAGAGGTCCTTTGAGAGCTTGAGAAAAAAAGTTCAGCAATATCGTGTAAGTAAGTGCCTAAATGGGTCAAACATTTTCAGACGAAGTTTTTCAGCGTGCGGATGAGTACGGGAGCTAGATATTCCTGCCAACTCCCAGAGGACATTTGAAAAGATTCTCTTGTCAGTTCAGATTGTCTCAAACTTCTTACCTTGGAGCCTGCCAGTCGTTGTGGTTATCCATTGATCCAAAAGTGTTTCCATCCAAATATGCTCGATCGTTCCAGTCCAAACTGAAAATTCATAATTCATTTTTTTGTTCCTCAACTTTTCTCACATTTCCTCCTTTTCCCGAATTCCCAAAAACTCTCGATTTCATGCCCTCCCAAAAACCAACCATTTTGCGTTTTGGCTCTCCCTACTTTCTAATCCCATGGTGCTCTTGTTCTTCGCGCACACCACAACGAAAAATGACAAATGAATGAGTATGTATATTCTTTTGGATCGCTCTTTTTTCCTATTTTTGGGCTCTTTGAGTTCCAGTTAAAACTGTGTTAGGAATAGTTTTTCCAGTGAAAACATT</canonical>
            <polymorphic>ACATTGGAAGTTTGATGGGTGCCGAAGAGATCGGATTGACGGCTACACATTCAACGGTGCGCGACATGACACCAGTTCCGCAAGTCGATGAGCATGTACTCCATTCACCGGCAACTAGTCTGCAATTTTCGATTAGAAGGAAATGGCGGAAAGACAATTGAAGAAGAGAGTAGTTGAACGACTTGTACGTTTTTTAGGAATTTAGGGAATTGGAGTATTGTGTTGGGAGCTCGCAACAGCTTGGTGGGTTTATTGATGTTCAGAGTTGGTTGGCCGATAGTAACTTTTTTGATTATTAGAAAAAAATTGGAACCTACAAAATGTTTCGCCGACCGAATTTCCAAGAATTCTGTATTTTATACAGTAACGAATAGATTCTTTGATGAATGCAACTTTCCACTTTTTGTATTATGTGTGAAACTAACAGGAGAACATTTTTAAGAGGTCCTTTGAGAGCTTGAGAAAAAAAGTTCAGCAATATCGTGTAAGTAAGTGCCTAMATGGGTCAAACATTTTCAGACGAAGTTTTTCAGCGTGCGGATGAGTACGGGAGCTAGATATTCCTGCCAACTCCCAGAGGACATTTGAAAAGATTCTCTTGTCAGTTCAGATTGTCTCAAACTTCTTACCTTGGAGCCTGCCAGTCGTTGTGGTTATCCATTGATCCAAAAGTGTTTCCATCCAAATATGCTCGATCGTTCCAGTCCAAACTGAAAATTCATAATTCATTTTTTTGTTCCTCAACTTTTCTCACATTTCCTCCTTTTCCCGAATTCCCAAAAACTCTCGATTTCATGCCCTCCCAAAAACCAACCATTTTGCGTTTTGGCTCTCCCTACTTTCTAATCCCATGGTGCTCTTGTTCTTCGCGCACACCACAACGAAAAATGACAAATGAATGAGTATGTATATTCTTTTGGATCGCTCTTTTTTCCTATTTTTGGGCTCTTTGAGTTCCAGTTAAAACTGTGTTAGGAATAGTTTTTCCAGTGAAAACATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTTGATGAATGCAACTTT</pcr_primer_p1>
		<pcr_primer_p2>AGTTTGAGACAATCTGAACTGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTTGATGAATGCAACTTTCCACTTTTTGTATTATGTGTGAAACTAACAGGAGAACATTTTTAAGAGGTCCTTTGAGAGCTTGAGAAAAAAAGTTCAGCAATATCGTGTAAGTAAGTGCCTAAATGGGTCAAACATTTTCAGACGAAGTTTTTCAGCGTGCGGATGAGTACGGGAGCTAGATATTCCTGCCAACTCCCAGAGGACATTTGAAAAGATTCTCTTGTCAGTTCAGATTGTCTCAAACT</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTTGATGAATGCAACTTTCCACTTTTTGTATTATGTGTGAAACTAACAGGAGAACATTTTTAAGAGGTCCTTTGAGAGCTTGAGAAAAAAAGTTCAGCAATATCGTGTAAGTAAGTGCCTAMATGGGTCAAACATTTTCAGACGAAGTTTTTCAGCGTGCGGATGAGTACGGGAGCTAGATATTCCTGCCAACTCCCAGAGGACATTTGAAAAGATTCTCTTGTCAGTTCAGATTGTCTCAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28320</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>890148</contig_pos>
        <strand>-</strand>
        <context>AAAGGACGTC[A/C]TAAAAGTYTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TACTTACACGATATTGCTGAACTTTTTTTCTCAAGCTCTCAAAGGACGTC</left_flank>
        <right_flank>TAAAAGTATTTTCCTGTTAGTTTCACACATAATACAAAAAGTGGAAAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGACACTCGCATTTCGGAGCCAAATTCAGAAAATTCGAATTCTCCTACGGCATGCATAGAATCGGGAACAAACTCCTGTCTATTTCCTTCAAGGTGAATAAAGCTTTTGATCTTCTTTCTTTTTTTAAAAGTATTTTCCTGTATTATCCCATTTCTGCGCCTTCTCTTCTAATGAACTCGGTGTTGCANNNNNNNNNNGGAGAAAGTTGAGGCCAAAAACGATTTGGGATTTCAGTTGGACGGAACGTTCGACAAATTTGAGGAAACCCTTTGGTTTCAAGGATAGCACCAACGACTGGCTGCCTCCAAGGTAAGAAGTTTGGGGCAATCTGGACCGACCAGGAGAATCGTTTTCAAATGTCCTTTGGGAGTGGGCAGGAATATATAGCTCCGGTACTCATCCGCACGCTGAAAACTTCGTCTGAAAATGTTTGACCCATGTAGGCACTTACTTACACGATATTGCTGAACTTTTTTTCTCAAGCTCTCAAAGGACGTCGTAAAAGTATTTTCCTGTTAGTTTCACACATAATACAAAAAGTGGAAAGTTGCATTCATCAAAGAATCTATTCGTTACTGTATAACAATACAGAATTCTTGGAAATTCGGTCGGCGAAACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTCTTAATAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAGACTTTTAAAAAGCAACACTTTACCGGTAAAAAGCCTAAAAACGGTCTGGAATAATTTTACAGCTAACATCACATTTATGGATTCATACAAAAATTCTCTTTCCTGAAAGTCCTAGTTAAAATGCTCATCGACA</canonical>
            <polymorphic>GGACACTCGCATTTCGGAGCCAAATTCAGAAAATTCGAATTCTCCTACGGCATGCATAGAATCGGGAACAAACTCCTGTCTATTTCCTTCAAGGTGAATAAAGCTTTTGATCTTCTTTCTTTTTTTAAAAGTATTTTCCTGTATTATCCCATTTCTGCGCCTTCTCTTCTAATGAACTCGGTGTTGCANNNNNNNNNNGGAGAAAGTTGAGGCCAAAAACGATTTGGGATTTCAGTTGGACGGAACGTTCGACAAATTTGAGGAAACCCTTTGGTTTCAAGGATAGCACCAACGACTGGCTGCCTCCAAGGTAAGAAGTTTGGGGCAATCTGGACCGACCAGGAGAATCGTTTTCAAATGTCCTTTGGGAGTGGGCAGGAATATATAGCTCCGGTACTCATCCGCACGCTGAAAACTTCGTCTGAAAATGTTTGACCCATGTAGGCACTTACTTACACGATATTGCTGAACTTTTTTTCTCAAGCTCTCAAAGGACGTCMTAAAAGTATTTTCCTGTTAGTTTCACACATAATACAAAAAGTGGAAAGTTGCATTCATCAAAGAATCTATTCGTTACTGTATAACAATACAGAATTCTTGGAAATTCGGTCGGCGAAACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTCTTAATAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAGACTTTTAAAAAGCAACACTTTACCGGTAAAAAGCCTAAAAACGGTCTGGAATAATTTTACAGCTAACATCACATTTATGGATTCATACAAAAATTCTCTTTCCTGAAAGTCCTAGTTAAAATGCTCATCGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGAATATATAGCTCCGGTACTC</pcr_primer_p1>
		<pcr_primer_p2>GAATTTCCAAGAATTCTGTATTG</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>AGGAATATATAGCTCCGGTACTCATCCGCACGCTGAAAACTTCGTCTGAAAATGTTTGACCCATGTAGGCACTTACTTACACGATATTGCTGAACTTTTTTTCTCAAGCTCTCAAAGGACGTCGTAAAAGTATTTTCCTGTTAGTTTCACACATAATACAAAAAGTGGAAAGTTGCATTCATCAAAGAATCTATTCGTTACTGTATAACAATACAGAATTCTTGGAAATTC</canonical_amplicon>
		<polymorphic_amplicon>AGGAATATATAGCTCCGGTACTCATCCGCACGCTGAAAACTTCGTCTGAAAATGTTTGACCCATGTAGGCACTTACTTACACGATATTGCTGAACTTTTTTTCTCAAGCTCTCAAAGGACGTCMTAAAAGTATTTTCCTGTTAGTTTCACACATAATACAAAAAGTGGAAAGTTGCATTCATCAAAGAATCTATTCGTTACTGTATAACAATACAGAATTCTTGGAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28321</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>890156</contig_pos>
        <strand>-</strand>
        <context>TCMTAAAAGT[C/T]TTTTCCTGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGATATTGCTGAACTTTTTTTCTCAAGCTCTCAAAGGACGTCGTAAAAGT</left_flank>
        <right_flank>TTTTCCTGTTAGTTTCACACATAATACAAAAAGTGGAAAGTTGCATTCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATTTCGGAGCCAAATTCAGAAAATTCGAATTCTCCTACGGCATGCATAGAATCGGGAACAAACTCCTGTCTATTTCCTTCAAGGTGAATAAAGCTTTTGATCTTCTTTCTTTTTTTAAAAGTATTTTCCTGTATTATCCCATTTCTGCGCCTTCTCTTCTAATGAACTCGGTGTTGCANNNNNNNNNNGGAGAAAGTTGAGGCCAAAAACGATTTGGGATTTCAGTTGGACGGAACGTTCGACAAATTTGAGGAAACCCTTTGGTTTCAAGGATAGCACCAACGACTGGCTGCCTCCAAGGTAAGAAGTTTGGGGCAATCTGGACCGACCAGGAGAATCGTTTTCAAATGTCCTTTGGGAGTGGGCAGGAATATATAGCTCCGGTACTCATCCGCACGCTGAAAACTTCGTCTGAAAATGTTTGACCCATGTAGGCACTTACTTACACGATATTGCTGAACTTTTTTTCTCAAGCTCTCAAAGGACGTCGTAAAAGTATTTTCCTGTTAGTTTCACACATAATACAAAAAGTGGAAAGTTGCATTCATCAAAGAATCTATTCGTTACTGTATAACAATACAGAATTCTTGGAAATTCGGTCGGCGAAACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTCTTAATAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAGACTTTTAAAAAGCAACACTTTACCGGTAAAAAGCCTAAAAACGGTCTGGAATAATTTTACAGCTAACATCACATTTATGGATTCATACAAAAATTCTCTTTCCTGAAAGTCCTAGTTAAAATGCTCATCGACATGCATCCT</canonical>
            <polymorphic>GCATTTCGGAGCCAAATTCAGAAAATTCGAATTCTCCTACGGCATGCATAGAATCGGGAACAAACTCCTGTCTATTTCCTTCAAGGTGAATAAAGCTTTTGATCTTCTTTCTTTTTTTAAAAGTATTTTCCTGTATTATCCCATTTCTGCGCCTTCTCTTCTAATGAACTCGGTGTTGCANNNNNNNNNNGGAGAAAGTTGAGGCCAAAAACGATTTGGGATTTCAGTTGGACGGAACGTTCGACAAATTTGAGGAAACCCTTTGGTTTCAAGGATAGCACCAACGACTGGCTGCCTCCAAGGTAAGAAGTTTGGGGCAATCTGGACCGACCAGGAGAATCGTTTTCAAATGTCCTTTGGGAGTGGGCAGGAATATATAGCTCCGGTACTCATCCGCACGCTGAAAACTTCGTCTGAAAATGTTTGACCCATGTAGGCACTTACTTACACGATATTGCTGAACTTTTTTTCTCAAGCTCTCAAAGGACGTCGTAAAAGTYTTTTCCTGTTAGTTTCACACATAATACAAAAAGTGGAAAGTTGCATTCATCAAAGAATCTATTCGTTACTGTATAACAATACAGAATTCTTGGAAATTCGGTCGGCGAAACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTCTTAATAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAGACTTTTAAAAAGCAACACTTTACCGGTAAAAAGCCTAAAAACGGTCTGGAATAATTTTACAGCTAACATCACATTTATGGATTCATACAAAAATTCTCTTTCCTGAAAGTCCTAGTTAAAATGCTCATCGACATGCATCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTACACGATATTGCTGAACTTT</pcr_primer_p1>
		<pcr_primer_p2>GTGGGTTTATTGATGTTCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTTACACGATATTGCTGAACTTTTTTTCTCAAGCTCTCAAAGGACGTCGTAAAAGTATTTTCCTGTTAGTTTCACACATAATACAAAAAGTGGAAAGTTGCATTCATCAAAGAATCTATTCGTTACTGTATAACAATACAGAATTCTTGGAAATTCGGTCGGCGAAACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCAC</canonical_amplicon>
		<polymorphic_amplicon>CTTACACGATATTGCTGAACTTTTTTTCTCAAGCTCTCAAAGGACGTCGTAAAAGTYTTTTCCTGTTAGTTTCACACATAATACAAAAAGTGGAAAGTTGCATTCATCAAAGAATCTATTCGTTACTGTATAACAATACAGAATTCTTGGAAATTCGGTCGGCGAAACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28322</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>890320</contig_pos>
        <strand>-</strand>
        <context>CTATCGGCCA[C/T]CCAACTCTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCA</left_flank>
        <right_flank>CCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAACTCGGTGTTGCANNNNNNNNNNGGAGAAAGTTGAGGCCAAAAACGATTTGGGATTTCAGTTGGACGGAACGTTCGACAAATTTGAGGAAACCCTTTGGTTTCAAGGATAGCACCAACGACTGGCTGCCTCCAAGGTAAGAAGTTTGGGGCAATCTGGACCGACCAGGAGAATCGTTTTCAAATGTCCTTTGGGAGTGGGCAGGAATATATAGCTCCGGTACTCATCCGCACGCTGAAAACTTCGTCTGAAAATGTTTGACCCATGTAGGCACTTACTTACACGATATTGCTGAACTTTTTTTCTCAAGCTCTCAAAGGACGTCGTAAAAGTATTTTCCTGTTAGTTTCACACATAATACAAAAAGTGGAAAGTTGCATTCATCAAAGAATCTATTCGTTACTGTATAACAATACAGAATTCTTGGAAATTCGGTCGGCGAAACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTCTTAATAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAGACTTTTAAAAAGCAACACTTTACCGGTAAAAAGCCTAAAAACGGTCTGGAATAATTTTACAGCTAACATCACATTTATGGATTCATACAAAAATTCTCTTTCCTGAAAGTCCTAGTTAAAATGCTCATCGACATGCATCCTACCGGACCGTATGAATCTCAGCCTTCGTGTGAAGTCCTCAATATGTCCAGAAGTGTTTACCCCACTAAACCTTTCATATTTTCCTATTTCTGAAGTCATTACACTCCTCTTGATTTCTGAAGTGGACCTCCCCTGTGAAACCTCCTTATGCTCTTTCTCACATC</canonical>
            <polymorphic>TGAACTCGGTGTTGCANNNNNNNNNNGGAGAAAGTTGAGGCCAAAAACGATTTGGGATTTCAGTTGGACGGAACGTTCGACAAATTTGAGGAAACCCTTTGGTTTCAAGGATAGCACCAACGACTGGCTGCCTCCAAGGTAAGAAGTTTGGGGCAATCTGGACCGACCAGGAGAATCGTTTTCAAATGTCCTTTGGGAGTGGGCAGGAATATATAGCTCCGGTACTCATCCGCACGCTGAAAACTTCGTCTGAAAATGTTTGACCCATGTAGGCACTTACTTACACGATATTGCTGAACTTTTTTTCTCAAGCTCTCAAAGGACGTCGTAAAAGTATTTTCCTGTTAGTTTCACACATAATACAAAAAGTGGAAAGTTGCATTCATCAAAGAATCTATTCGTTACTGTATAACAATACAGAATTCTTGGAAATTCGGTCGGCGAAACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAYCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTCTTAATAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAGACTTTTAAAAAGCAACACTTTACCGGTAAAAAGCCTAAAAACGGTCTGGAATAATTTTACAGCTAACATCACATTTATGGATTCATACAAAAATTCTCTTTCCTGAAAGTCCTAGTTAAAATGCTCATCGACATGCATCCTACCGGACCGTATGAATCTCAGCCTTCGTGTGAAGTCCTCAATATGTCCAGAAGTGTTTACCCCACTAAACCTTTCATATTTTCCTATTTCTGAAGTCATTACACTCCTCTTGATTTCTGAAGTGGACCTCCCCTGTGAAACCTCCTTATGCTCTTTCTCACATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>462 264 234 40</canonical_bands>
                <polymorphic_bands>462 304 234</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>184 143 118 100 96 89 87 70 40 30 29 10 4</canonical_bands>
                <polymorphic_bands>184 143 118 100 96 89 87 70 40 34 29 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATTTTGTAGGTTCCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTCAATGTTTTTCAGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTCTTAATAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAG</canonical_amplicon>
		<polymorphic_amplicon>ACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAYCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTCTTAATAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28323</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>890364</contig_pos>
        <strand>-</strand>
        <context>TTGCGAGCTC[C/G]CAACYCAATA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTC</left_flank>
        <right_flank>CAACGCAATACTCCAATTCCGTAAATTCTTAATAAACGTACCAGTCGTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACGATTTGGGATTTCAGTTGGACGGAACGTTCGACAAATTTGAGGAAACCCTTTGGTTTCAAGGATAGCACCAACGACTGGCTGCCTCCAAGGTAAGAAGTTTGGGGCAATCTGGACCGACCAGGAGAATCGTTTTCAAATGTCCTTTGGGAGTGGGCAGGAATATATAGCTCCGGTACTCATCCGCACGCTGAAAACTTCGTCTGAAAATGTTTGACCCATGTAGGCACTTACTTACACGATATTGCTGAACTTTTTTTCTCAAGCTCTCAAAGGACGTCGTAAAAGTATTTTCCTGTTAGTTTCACACATAATACAAAAAGTGGAAAGTTGCATTCATCAAAGAATCTATTCGTTACTGTATAACAATACAGAATTCTTGGAAATTCGGTCGGCGAAACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTCTTAATAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAGACTTTTAAAAAGCAACACTTTACCGGTAAAAAGCCTAAAAACGGTCTGGAATAATTTTACAGCTAACATCACATTTATGGATTCATACAAAAATTCTCTTTCCTGAAAGTCCTAGTTAAAATGCTCATCGACATGCATCCTACCGGACCGTATGAATCTCAGCCTTCGTGTGAAGTCCTCAATATGTCCAGAAGTGTTTACCCCACTAAACCTTTCATATTTTCCTATTTCTGAAGTCATTACACTCCTCTTGATTTCTGAAGTGGACCTCCCCTGTGAAACCTCCTTATGCTCTTTCTCACATCGAAGGGGGTGTCTTCTTCTCCATCTGTCATTACTCAATGCTAAT</canonical>
            <polymorphic>AAACGATTTGGGATTTCAGTTGGACGGAACGTTCGACAAATTTGAGGAAACCCTTTGGTTTCAAGGATAGCACCAACGACTGGCTGCCTCCAAGGTAAGAAGTTTGGGGCAATCTGGACCGACCAGGAGAATCGTTTTCAAATGTCCTTTGGGAGTGGGCAGGAATATATAGCTCCGGTACTCATCCGCACGCTGAAAACTTCGTCTGAAAATGTTTGACCCATGTAGGCACTTACTTACACGATATTGCTGAACTTTTTTTCTCAAGCTCTCAAAGGACGTCGTAAAAGTATTTTCCTGTTAGTTTCACACATAATACAAAAAGTGGAAAGTTGCATTCATCAAAGAATCTATTCGTTACTGTATAACAATACAGAATTCTTGGAAATTCGGTCGGCGAAACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCSCAACGCAATACTCCAATTCCGTAAATTCTTAATAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAGACTTTTAAAAAGCAACACTTTACCGGTAAAAAGCCTAAAAACGGTCTGGAATAATTTTACAGCTAACATCACATTTATGGATTCATACAAAAATTCTCTTTCCTGAAAGTCCTAGTTAAAATGCTCATCGACATGCATCCTACCGGACCGTATGAATCTCAGCCTTCGTGTGAAGTCCTCAATATGTCCAGAAGTGTTTACCCCACTAAACCTTTCATATTTTCCTATTTCTGAAGTCATTACACTCCTCTTGATTTCTGAAGTGGACCTCCCCTGTGAAACCTCCTTATGCTCTTTCTCACATCGAAGGGGGTGTCTTCTTCTCCATCTGTCATTACTCAATGCTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATTTTGTAGGTTCCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTCAATGTTTTTCAGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTCTTAATAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAG</canonical_amplicon>
		<polymorphic_amplicon>ACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCSCAACGCAATACTCCAATTCCGTAAATTCTTAATAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28324</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>890369</contig_pos>
        <strand>-</strand>
        <context>AGCTCSCAAC[C/T]CAATACTCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAAC</left_flank>
        <right_flank>CAATACTCCAATTCCGTAAATTCTTAATAAACGTACCAGTCGTTCACCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTGGGATTTCAGTTGGACGGAACGTTCGACAAATTTGAGGAAACCCTTTGGTTTCAAGGATAGCACCAACGACTGGCTGCCTCCAAGGTAAGAAGTTTGGGGCAATCTGGACCGACCAGGAGAATCGTTTTCAAATGTCCTTTGGGAGTGGGCAGGAATATATAGCTCCGGTACTCATCCGCACGCTGAAAACTTCGTCTGAAAATGTTTGACCCATGTAGGCACTTACTTACACGATATTGCTGAACTTTTTTTCTCAAGCTCTCAAAGGACGTCGTAAAAGTATTTTCCTGTTAGTTTCACACATAATACAAAAAGTGGAAAGTTGCATTCATCAAAGAATCTATTCGTTACTGTATAACAATACAGAATTCTTGGAAATTCGGTCGGCGAAACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTCTTAATAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAGACTTTTAAAAAGCAACACTTTACCGGTAAAAAGCCTAAAAACGGTCTGGAATAATTTTACAGCTAACATCACATTTATGGATTCATACAAAAATTCTCTTTCCTGAAAGTCCTAGTTAAAATGCTCATCGACATGCATCCTACCGGACCGTATGAATCTCAGCCTTCGTGTGAAGTCCTCAATATGTCCAGAAGTGTTTACCCCACTAAACCTTTCATATTTTCCTATTTCTGAAGTCATTACACTCCTCTTGATTTCTGAAGTGGACCTCCCCTGTGAAACCTCCTTATGCTCTTTCTCACATCGAAGGGGGTGTCTTCTTCTCCATCTGTCATTACTCAATGCTAATGAACC</canonical>
            <polymorphic>ATTTGGGATTTCAGTTGGACGGAACGTTCGACAAATTTGAGGAAACCCTTTGGTTTCAAGGATAGCACCAACGACTGGCTGCCTCCAAGGTAAGAAGTTTGGGGCAATCTGGACCGACCAGGAGAATCGTTTTCAAATGTCCTTTGGGAGTGGGCAGGAATATATAGCTCCGGTACTCATCCGCACGCTGAAAACTTCGTCTGAAAATGTTTGACCCATGTAGGCACTTACTTACACGATATTGCTGAACTTTTTTTCTCAAGCTCTCAAAGGACGTCGTAAAAGTATTTTCCTGTTAGTTTCACACATAATACAAAAAGTGGAAAGTTGCATTCATCAAAGAATCTATTCGTTACTGTATAACAATACAGAATTCTTGGAAATTCGGTCGGCGAAACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACYCAATACTCCAATTCCGTAAATTCTTAATAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAGACTTTTAAAAAGCAACACTTTACCGGTAAAAAGCCTAAAAACGGTCTGGAATAATTTTACAGCTAACATCACATTTATGGATTCATACAAAAATTCTCTTTCCTGAAAGTCCTAGTTAAAATGCTCATCGACATGCATCCTACCGGACCGTATGAATCTCAGCCTTCGTGTGAAGTCCTCAATATGTCCAGAAGTGTTTACCCCACTAAACCTTTCATATTTTCCTATTTCTGAAGTCATTACACTCCTCTTGATTTCTGAAGTGGACCTCCCCTGTGAAACCTCCTTATGCTCTTTCTCACATCGAAGGGGGTGTCTTCTTCTCCATCTGTCATTACTCAATGCTAATGAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATTTTGTAGGTTCCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTCAATGTTTTTCAGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTCTTAATAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAG</canonical_amplicon>
		<polymorphic_amplicon>ACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACYCAATACTCCAATTCCGTAAATTCTTAATAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28325</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>890385</contig_pos>
        <strand>-</strand>
        <context>CTCCAATTCC[C/G]TAAATTCRTA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCC</left_flank>
        <right_flank>TAAATTCTTAATAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGACGGAACGTTCGACAAATTTGAGGAAACCCTTTGGTTTCAAGGATAGCACCAACGACTGGCTGCCTCCAAGGTAAGAAGTTTGGGGCAATCTGGACCGACCAGGAGAATCGTTTTCAAATGTCCTTTGGGAGTGGGCAGGAATATATAGCTCCGGTACTCATCCGCACGCTGAAAACTTCGTCTGAAAATGTTTGACCCATGTAGGCACTTACTTACACGATATTGCTGAACTTTTTTTCTCAAGCTCTCAAAGGACGTCGTAAAAGTATTTTCCTGTTAGTTTCACACATAATACAAAAAGTGGAAAGTTGCATTCATCAAAGAATCTATTCGTTACTGTATAACAATACAGAATTCTTGGAAATTCGGTCGGCGAAACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTCTTAATAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAGACTTTTAAAAAGCAACACTTTACCGGTAAAAAGCCTAAAAACGGTCTGGAATAATTTTACAGCTAACATCACATTTATGGATTCATACAAAAATTCTCTTTCCTGAAAGTCCTAGTTAAAATGCTCATCGACATGCATCCTACCGGACCGTATGAATCTCAGCCTTCGTGTGAAGTCCTCAATATGTCCAGAAGTGTTTACCCCACTAAACCTTTCATATTTTCCTATTTCTGAAGTCATTACACTCCTCTTGATTTCTGAAGTGGACCTCCCCTGTGAAACCTCCTTATGCTCTTTCTCACATCGAAGGGGGTGTCTTCTTCTCCATCTGTCATTACTCAATGCTAATGAACCTTACTTGTAGGAAGCA</canonical>
            <polymorphic>GGACGGAACGTTCGACAAATTTGAGGAAACCCTTTGGTTTCAAGGATAGCACCAACGACTGGCTGCCTCCAAGGTAAGAAGTTTGGGGCAATCTGGACCGACCAGGAGAATCGTTTTCAAATGTCCTTTGGGAGTGGGCAGGAATATATAGCTCCGGTACTCATCCGCACGCTGAAAACTTCGTCTGAAAATGTTTGACCCATGTAGGCACTTACTTACACGATATTGCTGAACTTTTTTTCTCAAGCTCTCAAAGGACGTCGTAAAAGTATTTTCCTGTTAGTTTCACACATAATACAAAAAGTGGAAAGTTGCATTCATCAAAGAATCTATTCGTTACTGTATAACAATACAGAATTCTTGGAAATTCGGTCGGCGAAACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCSTAAATTCTTAATAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAGACTTTTAAAAAGCAACACTTTACCGGTAAAAAGCCTAAAAACGGTCTGGAATAATTTTACAGCTAACATCACATTTATGGATTCATACAAAAATTCTCTTTCCTGAAAGTCCTAGTTAAAATGCTCATCGACATGCATCCTACCGGACCGTATGAATCTCAGCCTTCGTGTGAAGTCCTCAATATGTCCAGAAGTGTTTACCCCACTAAACCTTTCATATTTTCCTATTTCTGAAGTCATTACACTCCTCTTGATTTCTGAAGTGGACCTCCCCTGTGAAACCTCCTTATGCTCTTTCTCACATCGAAGGGGGTGTCTTCTTCTCCATCTGTCATTACTCAATGCTAATGAACCTTACTTGTAGGAAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATTTTGTAGGTTCCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTCAATGTTTTTCAGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTCTTAATAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAG</canonical_amplicon>
		<polymorphic_amplicon>ACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCSTAAATTCTTAATAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28326</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>890393</contig_pos>
        <strand>-</strand>
        <context>CCSTAAATTC[A/G]TAAWAAACGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTC</left_flank>
        <right_flank>TAATAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTCGACAAATTTGAGGAAACCCTTTGGTTTCAAGGATAGCACCAACGACTGGCTGCCTCCAAGGTAAGAAGTTTGGGGCAATCTGGACCGACCAGGAGAATCGTTTTCAAATGTCCTTTGGGAGTGGGCAGGAATATATAGCTCCGGTACTCATCCGCACGCTGAAAACTTCGTCTGAAAATGTTTGACCCATGTAGGCACTTACTTACACGATATTGCTGAACTTTTTTTCTCAAGCTCTCAAAGGACGTCGTAAAAGTATTTTCCTGTTAGTTTCACACATAATACAAAAAGTGGAAAGTTGCATTCATCAAAGAATCTATTCGTTACTGTATAACAATACAGAATTCTTGGAAATTCGGTCGGCGAAACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTCTTAATAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAGACTTTTAAAAAGCAACACTTTACCGGTAAAAAGCCTAAAAACGGTCTGGAATAATTTTACAGCTAACATCACATTTATGGATTCATACAAAAATTCTCTTTCCTGAAAGTCCTAGTTAAAATGCTCATCGACATGCATCCTACCGGACCGTATGAATCTCAGCCTTCGTGTGAAGTCCTCAATATGTCCAGAAGTGTTTACCCCACTAAACCTTTCATATTTTCCTATTTCTGAAGTCATTACACTCCTCTTGATTTCTGAAGTGGACCTCCCCTGTGAAACCTCCTTATGCTCTTTCTCACATCGAAGGGGGTGTCTTCTTCTCCATCTGTCATTACTCAATGCTAATGAACCTTACTTGTAGGAAGCATCAAGTTA</canonical>
            <polymorphic>CGTTCGACAAATTTGAGGAAACCCTTTGGTTTCAAGGATAGCACCAACGACTGGCTGCCTCCAAGGTAAGAAGTTTGGGGCAATCTGGACCGACCAGGAGAATCGTTTTCAAATGTCCTTTGGGAGTGGGCAGGAATATATAGCTCCGGTACTCATCCGCACGCTGAAAACTTCGTCTGAAAATGTTTGACCCATGTAGGCACTTACTTACACGATATTGCTGAACTTTTTTTCTCAAGCTCTCAAAGGACGTCGTAAAAGTATTTTCCTGTTAGTTTCACACATAATACAAAAAGTGGAAAGTTGCATTCATCAAAGAATCTATTCGTTACTGTATAACAATACAGAATTCTTGGAAATTCGGTCGGCGAAACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTCRTAATAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAGACTTTTAAAAAGCAACACTTTACCGGTAAAAAGCCTAAAAACGGTCTGGAATAATTTTACAGCTAACATCACATTTATGGATTCATACAAAAATTCTCTTTCCTGAAAGTCCTAGTTAAAATGCTCATCGACATGCATCCTACCGGACCGTATGAATCTCAGCCTTCGTGTGAAGTCCTCAATATGTCCAGAAGTGTTTACCCCACTAAACCTTTCATATTTTCCTATTTCTGAAGTCATTACACTCCTCTTGATTTCTGAAGTGGACCTCCCCTGTGAAACCTCCTTATGCTCTTTCTCACATCGAAGGGGGTGTCTTCTTCTCCATCTGTCATTACTCAATGCTAATGAACCTTACTTGTAGGAAGCATCAAGTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>500 262 127 111</canonical_bands>
                <polymorphic_bands>627 262 111</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATTTTGTAGGTTCCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTCAATGTTTTTCAGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTCTTAATAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAG</canonical_amplicon>
		<polymorphic_amplicon>ACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTCRTAATAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28327</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>890397</contig_pos>
        <strand>-</strand>
        <context>AAATTCRTAA[A/T]AAACGTACKA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTCTTAA</left_flank>
        <right_flank>AAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACAAATTTGAGGAAACCCTTTGGTTTCAAGGATAGCACCAACGACTGGCTGCCTCCAAGGTAAGAAGTTTGGGGCAATCTGGACCGACCAGGAGAATCGTTTTCAAATGTCCTTTGGGAGTGGGCAGGAATATATAGCTCCGGTACTCATCCGCACGCTGAAAACTTCGTCTGAAAATGTTTGACCCATGTAGGCACTTACTTACACGATATTGCTGAACTTTTTTTCTCAAGCTCTCAAAGGACGTCGTAAAAGTATTTTCCTGTTAGTTTCACACATAATACAAAAAGTGGAAAGTTGCATTCATCAAAGAATCTATTCGTTACTGTATAACAATACAGAATTCTTGGAAATTCGGTCGGCGAAACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTCTTAATAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAGACTTTTAAAAAGCAACACTTTACCGGTAAAAAGCCTAAAAACGGTCTGGAATAATTTTACAGCTAACATCACATTTATGGATTCATACAAAAATTCTCTTTCCTGAAAGTCCTAGTTAAAATGCTCATCGACATGCATCCTACCGGACCGTATGAATCTCAGCCTTCGTGTGAAGTCCTCAATATGTCCAGAAGTGTTTACCCCACTAAACCTTTCATATTTTCCTATTTCTGAAGTCATTACACTCCTCTTGATTTCTGAAGTGGACCTCCCCTGTGAAACCTCCTTATGCTCTTTCTCACATCGAAGGGGGTGTCTTCTTCTCCATCTGTCATTACTCAATGCTAATGAACCTTACTTGTAGGAAGCATCAAGTTAAGAT</canonical>
            <polymorphic>CGACAAATTTGAGGAAACCCTTTGGTTTCAAGGATAGCACCAACGACTGGCTGCCTCCAAGGTAAGAAGTTTGGGGCAATCTGGACCGACCAGGAGAATCGTTTTCAAATGTCCTTTGGGAGTGGGCAGGAATATATAGCTCCGGTACTCATCCGCACGCTGAAAACTTCGTCTGAAAATGTTTGACCCATGTAGGCACTTACTTACACGATATTGCTGAACTTTTTTTCTCAAGCTCTCAAAGGACGTCGTAAAAGTATTTTCCTGTTAGTTTCACACATAATACAAAAAGTGGAAAGTTGCATTCATCAAAGAATCTATTCGTTACTGTATAACAATACAGAATTCTTGGAAATTCGGTCGGCGAAACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTCTTAAWAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAGACTTTTAAAAAGCAACACTTTACCGGTAAAAAGCCTAAAAACGGTCTGGAATAATTTTACAGCTAACATCACATTTATGGATTCATACAAAAATTCTCTTTCCTGAAAGTCCTAGTTAAAATGCTCATCGACATGCATCCTACCGGACCGTATGAATCTCAGCCTTCGTGTGAAGTCCTCAATATGTCCAGAAGTGTTTACCCCACTAAACCTTTCATATTTTCCTATTTCTGAAGTCATTACACTCCTCTTGATTTCTGAAGTGGACCTCCCCTGTGAAACCTCCTTATGCTCTTTCTCACATCGAAGGGGGTGTCTTCTTCTCCATCTGTCATTACTCAATGCTAATGAACCTTACTTGTAGGAAGCATCAAGTTAAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATTTTGTAGGTTCCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTCAATGTTTTTCAGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTCTTAATAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAG</canonical_amplicon>
		<polymorphic_amplicon>ACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTCTTAAWAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28328</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>890406</contig_pos>
        <strand>-</strand>
        <context>AWAAACGTAC[G/T]AGTCGTTCAK</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTCTTAATAAACGTAC</left_flank>
        <right_flank>AGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGGAAACCCTTTGGTTTCAAGGATAGCACCAACGACTGGCTGCCTCCAAGGTAAGAAGTTTGGGGCAATCTGGACCGACCAGGAGAATCGTTTTCAAATGTCCTTTGGGAGTGGGCAGGAATATATAGCTCCGGTACTCATCCGCACGCTGAAAACTTCGTCTGAAAATGTTTGACCCATGTAGGCACTTACTTACACGATATTGCTGAACTTTTTTTCTCAAGCTCTCAAAGGACGTCGTAAAAGTATTTTCCTGTTAGTTTCACACATAATACAAAAAGTGGAAAGTTGCATTCATCAAAGAATCTATTCGTTACTGTATAACAATACAGAATTCTTGGAAATTCGGTCGGCGAAACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTCTTAATAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAGACTTTTAAAAAGCAACACTTTACCGGTAAAAAGCCTAAAAACGGTCTGGAATAATTTTACAGCTAACATCACATTTATGGATTCATACAAAAATTCTCTTTCCTGAAAGTCCTAGTTAAAATGCTCATCGACATGCATCCTACCGGACCGTATGAATCTCAGCCTTCGTGTGAAGTCCTCAATATGTCCAGAAGTGTTTACCCCACTAAACCTTTCATATTTTCCTATTTCTGAAGTCATTACACTCCTCTTGATTTCTGAAGTGGACCTCCCCTGTGAAACCTCCTTATGCTCTTTCTCACATCGAAGGGGGTGTCTTCTTCTCCATCTGTCATTACTCAATGCTAATGAACCTTACTTGTAGGAAGCATCAAGTTAAGATCAGAAGAAG</canonical>
            <polymorphic>TGAGGAAACCCTTTGGTTTCAAGGATAGCACCAACGACTGGCTGCCTCCAAGGTAAGAAGTTTGGGGCAATCTGGACCGACCAGGAGAATCGTTTTCAAATGTCCTTTGGGAGTGGGCAGGAATATATAGCTCCGGTACTCATCCGCACGCTGAAAACTTCGTCTGAAAATGTTTGACCCATGTAGGCACTTACTTACACGATATTGCTGAACTTTTTTTCTCAAGCTCTCAAAGGACGTCGTAAAAGTATTTTCCTGTTAGTTTCACACATAATACAAAAAGTGGAAAGTTGCATTCATCAAAGAATCTATTCGTTACTGTATAACAATACAGAATTCTTGGAAATTCGGTCGGCGAAACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTCTTAATAAACGTACKAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAGACTTTTAAAAAGCAACACTTTACCGGTAAAAAGCCTAAAAACGGTCTGGAATAATTTTACAGCTAACATCACATTTATGGATTCATACAAAAATTCTCTTTCCTGAAAGTCCTAGTTAAAATGCTCATCGACATGCATCCTACCGGACCGTATGAATCTCAGCCTTCGTGTGAAGTCCTCAATATGTCCAGAAGTGTTTACCCCACTAAACCTTTCATATTTTCCTATTTCTGAAGTCATTACACTCCTCTTGATTTCTGAAGTGGACCTCCCCTGTGAAACCTCCTTATGCTCTTTCTCACATCGAAGGGGGTGTCTTCTTCTCCATCTGTCATTACTCAATGCTAATGAACCTTACTTGTAGGAAGCATCAAGTTAAGATCAGAAGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATTTTGTAGGTTCCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTCAATGTTTTTCAGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTCTTAATAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAG</canonical_amplicon>
		<polymorphic_amplicon>ACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTCTTAATAAACGTACKAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28329</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>890416</contig_pos>
        <strand>-</strand>
        <context>KAGTCGTTCA[G/T]CTACTGCGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACGCAATACTCCAATTCCGTAAATTCTTAATAAACGTACCAGTCGTTCA</left_flank>
        <right_flank>CTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTGGTTTCAAGGATAGCACCAACGACTGGCTGCCTCCAAGGTAAGAAGTTTGGGGCAATCTGGACCGACCAGGAGAATCGTTTTCAAATGTCCTTTGGGAGTGGGCAGGAATATATAGCTCCGGTACTCATCCGCACGCTGAAAACTTCGTCTGAAAATGTTTGACCCATGTAGGCACTTACTTACACGATATTGCTGAACTTTTTTTCTCAAGCTCTCAAAGGACGTCGTAAAAGTATTTTCCTGTTAGTTTCACACATAATACAAAAAGTGGAAAGTTGCATTCATCAAAGAATCTATTCGTTACTGTATAACAATACAGAATTCTTGGAAATTCGGTCGGCGAAACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTCTTAATAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAGACTTTTAAAAAGCAACACTTTACCGGTAAAAAGCCTAAAAACGGTCTGGAATAATTTTACAGCTAACATCACATTTATGGATTCATACAAAAATTCTCTTTCCTGAAAGTCCTAGTTAAAATGCTCATCGACATGCATCCTACCGGACCGTATGAATCTCAGCCTTCGTGTGAAGTCCTCAATATGTCCAGAAGTGTTTACCCCACTAAACCTTTCATATTTTCCTATTTCTGAAGTCATTACACTCCTCTTGATTTCTGAAGTGGACCTCCCCTGTGAAACCTCCTTATGCTCTTTCTCACATCGAAGGGGGTGTCTTCTTCTCCATCTGTCATTACTCAATGCTAATGAACCTTACTTGTAGGAAGCATCAAGTTAAGATCAGAAGAAGTTTAAGGAAT</canonical>
            <polymorphic>CTTTGGTTTCAAGGATAGCACCAACGACTGGCTGCCTCCAAGGTAAGAAGTTTGGGGCAATCTGGACCGACCAGGAGAATCGTTTTCAAATGTCCTTTGGGAGTGGGCAGGAATATATAGCTCCGGTACTCATCCGCACGCTGAAAACTTCGTCTGAAAATGTTTGACCCATGTAGGCACTTACTTACACGATATTGCTGAACTTTTTTTCTCAAGCTCTCAAAGGACGTCGTAAAAGTATTTTCCTGTTAGTTTCACACATAATACAAAAAGTGGAAAGTTGCATTCATCAAAGAATCTATTCGTTACTGTATAACAATACAGAATTCTTGGAAATTCGGTCGGCGAAACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTCTTAATAAACGTACCAGTCGTTCAKCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAGACTTTTAAAAAGCAACACTTTACCGGTAAAAAGCCTAAAAACGGTCTGGAATAATTTTACAGCTAACATCACATTTATGGATTCATACAAAAATTCTCTTTCCTGAAAGTCCTAGTTAAAATGCTCATCGACATGCATCCTACCGGACCGTATGAATCTCAGCCTTCGTGTGAAGTCCTCAATATGTCCAGAAGTGTTTACCCCACTAAACCTTTCATATTTTCCTATTTCTGAAGTCATTACACTCCTCTTGATTTCTGAAGTGGACCTCCCCTGTGAAACCTCCTTATGCTCTTTCTCACATCGAAGGGGGTGTCTTCTTCTCCATCTGTCATTACTCAATGCTAATGAACCTTACTTGTAGGAAGCATCAAGTTAAGATCAGAAGAAGTTTAAGGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>154 99 86 85 70 68 66 54 45 41 39 33 24 23 21 20 16 14 13 10 9 6 2 2</canonical_bands>
                <polymorphic_bands>154 115 99 86 85 68 66 54 41 39 33 24 23 21 20 16 14 13 10 9 6 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>497 300 136 67</canonical_bands>
                <polymorphic_bands>797 136 67</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATTTTGTAGGTTCCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTCAATGTTTTTCAGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTCTTAATAAACGTACCAGTCGTTCACCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAG</canonical_amplicon>
		<polymorphic_amplicon>ACATTTTGTAGGTTCCAATTTTTTTCTAATAATCAAAAAAGTTACTATCGGCCAGCCAACTCTGAACATCAATAAACCCACCAAGCTGTTGCGAGCTCGCAACGCAATACTCCAATTCCGTAAATTCTTAATAAACGTACCAGTCGTTCAKCTACTGCGAACGCGGAGCGACCGTAACGGATTTTTCGCGAATCACCTGTGTCTAAATTTGAGCTTATATATCTCGTTTCCTCTGAAAAACATTGAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28330</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>896429</contig_pos>
        <strand></strand>
        <context>ttttatatac[G/C]tttttaggag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TGTTTACCATAATATAGAAAATATTGTATTAAATGAAAACTTTTATATAC</left_flank>
        <right_flank>TTTTTAGGAGCCGAGATAATTGAGCTGCTACAGGTTTTACGGTATTTGAT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTAAAAAGCATAGAAAACATTATCATTTGTGTTTAAAATAGAAGTGATAAACAACATAACCATTCTTCAAGGATCTCAAGTTTTTGAGATGTTTCGTGAGTTTTAATGATAATAAGAAAGTATATTAAATAAGAAAAAATAATAATGAAAGAAACAATCAATCATCCCCTTCATTCTTATGGGGCACACATTTTTGAGCTTACCACCAACGCTTCCAGGAAACATAAAAATAACTCACCGGCATCTGAAAAGGAGCTGATCATGATTGAAACTGATTAAGCTTTGTGGTTCATACTATGACAGAAATTTGGTGATAGGTATGCAAAATCCAAACAAGGAAAAAAAGTTTTTCAATCTTCAACAGTTGCCGTAAAACCTGTAACAGAATGGCATAGACAATTTATCTCGGTTTCCGTAAAAAATAGTAAAAAGTTGTCAACTGATAAATTGTTTACCATAATATAGAAAATATTGTATTAAATGAAAACTTTTATATACGTTTTTAGGAGCCGAGATAATTGAGCTGCTACAGGTTTTACGGTATTTGATATCAATTTTGAACTGCTTAACTGGCAATTGAAATTAAAACTTCAACTTCTATCTATGCATAAAAAGCAATCCTCATAGGTCAAGAATATTTCAAACCTCGAAGGACAAATCAGCATCGGACACGGTCTTGCTTCAACTTTCGGTCTCAATTTATCAGCGCATAATCTTTCTGGAACAACCCTTCCGCTGACTGCATTCACACATACAACTATCGGTTGACTTGTGGAAGCAATCGATCGACCAGCCCCTGCCCAATCCACAATATCATCACAGTTTGATGCACACGCAGTGTATTCTTCTATATTTCAAAGCTATAGTAACTATGGACATTGAGAATACCTGAAACTTTCCAGACGAATTTCCCGTTGTCACAAGTATCACCCCGTCCGCCACAGACACCACAGGCGTCGAAACGGAATGAAGAACCAATTAAACCGTCACATCCAACAA</canonical>
            <polymorphic>TCTAAAAAGCATAGAAAACATTATCATTTGTGTTTAAAATAGAAGTGATAAACAACATAACCATTCTTCAAGGATCTCAAGTTTTTGAGATGTTTCGTGAGTTTTAATGATAATAAGAAAGTATATTAAATAAGAAAAAATAATAATGAAAGAAACAATCAATCATCCCCTTCATTCTTATGGGGCACACATTTTTGAGCTTACCACCAACGCTTCCAGGAAACATAAAAATAACTCACCGGCATCTGAAAAGGAGCTGATCATGATTGAAACTGATTAAGCTTTGTGGTTCATACTATGACAGAAATTTGGTGATAGGTATGCAAAATCCAAACAAGGAAAAAAAGTTTTTCAATCTTCAACAGTTGCCGTAAAACCTGTAACAGAATGGCATAGACAATTTATCTCGGTTTCCGTAAAAAATAGTAAAAAGTTGTCAACTGATAAATTGTTTACCATAATATAGAAAATATTGTATTAAATGAAAACTTTTATATACSTTTTTAGGAGCCGAGATAATTGAGCTGCTACAGGTTTTACGGTATTTGATATCAATTTTGAACTGCTTAACTGGCAATTGAAATTAAAACTTCAACTTCTATCTATGCATAAAAAGCAATCCTCATAGGTCAAGAATATTTCAAACCTCGAAGGACAAATCAGCATCGGACACGGTCTTGCTTCAACTTTCGGTCTCAATTTATCAGCGCATAATCTTTCTGGAACAACCCTTCCGCTGACTGCATTCACACATACAACTATCGGTTGACTTGTGGAAGCAATCGATCGACCAGCCCCTGCCCAATCCACAATATCATCACAGTTTGATGCACACGCAGTGTATTCTTCTATATTTCAAAGCTATAGTAACTATGGACATTGAGAATACCTGAAACTTTCCAGACGAATTTCCCGTTGTCACAAGTATCACCCCGTCCGCCACAGACACCACAGGCGTCGAAACGGAATGAAGAACCAATTAAACCGTCACATCCAACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAATTTGGTGATAGGTATGC</pcr_primer_p1>
		<pcr_primer_p2>TGATATCAAATACCGTAAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGAAATTTGGTGATAGGTATGCAAAATCCAAACAAGGAAAAAAAGTTTTTCAATCTTCAACAGTTGCCGTAAAACCTGTAACAGAATGGCATAGACAATTTATCTCGGTTTCCGTAAAAAATAGTAAAAAGTTGTCAACTGATAAATTGTTTACCATAATATAGAAAATATTGTATTAAATGAAAACTTTTATATACGTTTTTAGGAGCCGAGATAATTGAGCTGCTACAGGTTTTACGGTATTTGATATCA</canonical_amplicon>
		<polymorphic_amplicon>AGAAATTTGGTGATAGGTATGCAAAATCCAAACAAGGAAAAAAAGTTTTTCAATCTTCAACAGTTGCCGTAAAACCTGTAACAGAATGGCATAGACAATTTATCTCGGTTTCCGTAAAAAATAGTAAAAAGTTGTCAACTGATAAATTGTTTACCATAATATAGAAAATATTGTATTAAATGAAAACTTTTATATACSTTTTTAGGAGCCGAGATAATTGAGCTGCTACAGGTTTTACGGTATTTGATATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28331</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>924702</contig_pos>
        <strand></strand>
        <context>AATGAATACA[A/T]TTAACGAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAGCCAACTCATCGAATTACGAATAAAGGTGAATATCTAAATGAATACA</left_flank>
        <right_flank>TTAACGAAGAAACTATCTGTTCCAGTTGGAAACTTCTTCGTATCTTGGTC</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATGCAGTGAAAAGCAGCCTAACATGTTCGCTTCTGCAAGTTCCGATCGTAATGTTTGTATCTGGGATGCTAGACAGAGCAAGCCAACTCATCGAATTACGAATAAAGGTGAATATCTAAATGAATACAATTAACGAAGAAACTATCTGTTCCAGTTGGAAACTTCTTCGTATCTTGGTCACCCTGCGATGAATACTTGATTTTTCTGGATAAGGATAATCGTGTCAATACAGTAGATGTCAGGAACTATAAAGTAGTTAATGTAAGATTTTATAGGCCGGTTTCGTCAAAAACCGCTATAGTTTACAGACACACGACATGAAGGTATTCTCTCATGAAGTGATCTTCCACCCCCTCTCTAACCATGTTTTTGTGGCCGAATCAGGAGGAAGAGTCGAAGTTCTGAAATTCGTCGGCGGCGCTCTAGAACCAGCTACCGTAATCCAGCACATTCACATCAAGTTGACTGCTTGGCTCTTTCGATTTCCAAAGACGGACAAAAACTTGCTGTTGGAGCATCCGATGCATCGTGTTCAGTATGGGACCTTGATGAACTGATTTGTGAGAAAGTCATTCCAAGGTGAGTCGATAATAAAAACTGTGATTGCAAGCATAACTTTCAGACACGAC</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCATGCAGTGAAAAGCAGCCTAACATGTTCGCTTCTGCAAGTTCCGATCGTAATGTTTGTATCTGGGATGCTAGACAGAGCAAGCCAACTCATCGAATTACGAATAAAGGTGAATATCTAAATGAATACAWTTAACGAAGAAACTATCTGTTCCAGTTGGAAACTTCTTCGTATCTTGGTCACCCTGCGATGAATACTTGATTTTTCTGGATAAGGATAATCGTGTCAATACAGTAGATGTCAGGAACTATAAAGTAGTTAATGTAAGATTTTATAGGCCGGTTTCGTCAAAAACCGCTATAGTTTACAGACACACGACATGAAGGTATTCTCTCATGAAGTGATCTTCCACCCCCTCTCTAACCATGTTTTTGTGGCCGAATCAGGAGGAAGAGTCGAAGTTCTGAAATTCGTCGGCGGCGCTCTAGAACCAGCTACCGTAATCCAGCACATTCACATCAAGTTGACTGCTTGGCTCTTTCGATTTCCAAAGACGGACAAAAACTTGCTGTTGGAGCATCCGATGCATCGTGTTCAGTATGGGACCTTGATGAACTGATTTGTGAGAAAGTCATTCCAAGGTGAGTCGATAATAAAAACTGTGATTGCAAGCATAACTTTCAGACACGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>464 278 224 34</canonical_bands>
                <polymorphic_bands>464 312 224</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATCTGGGATGCTAGACAGAG</pcr_primer_p1>
		<pcr_primer_p2>TGTAAACTATAGCGGTTTTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTATCTGGGATGCTAGACAGAGCAAGCCAACTCATCGAATTACGAATAAAGGTGAATATCTAAATGAATACAATTAACGAAGAAACTATCTGTTCCAGTTGGAAACTTCTTCGTATCTTGGTCACCCTGCGATGAATACTTGATTTTTCTGGATAAGGATAATCGTGTCAATACAGTAGATGTCAGGAACTATAAAGTAGTTAATGTAAGATTTTATAGGCCGGTTTCGTCAAAAACCGCTATAGTTTACA</canonical_amplicon>
		<polymorphic_amplicon>GTATCTGGGATGCTAGACAGAGCAAGCCAACTCATCGAATTACGAATAAAGGTGAATATCTAAATGAATACAWTTAACGAAGAAACTATCTGTTCCAGTTGGAAACTTCTTCGTATCTTGGTCACCCTGCGATGAATACTTGATTTTTCTGGATAAGGATAATCGTGTCAATACAGTAGATGTCAGGAACTATAAAGTAGTTAATGTAAGATTTTATAGGCCGGTTTCGTCAAAAACCGCTATAGTTTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28332</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>944737</contig_pos>
        <strand>+</strand>
        <context>TCCCGAACTG[A/T]AAAAAAAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGCACAAAATTGATTGAAAATCGTTTTGCGTGGGATGTCTCCCGAACTG</left_flank>
        <right_flank>AAAAAAAAGAAGTTTCAGATGAATAATAGAAACAAAATAAAAGGAAGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAGAGGAAATACGTTAAATGTTTTGCATCAAAACTCTTTGAGGCGAGGATCTAACTAAGGCCTAAGTTACGGATTTTATTCTACGACTGATCTGCAATCAGCCTAATCAAACTCTTCAGAATTCGGAGCCTCTCAGCGGCAAATATGAATTAATGAGGTCTACGTTCAACTTTCGAACAGTCAATTTTTCAAATGCGCTCTCTCTTTTTTGATACCTCTCTAAATATCTAGCATAACGTTTCGAAGTTTTCTGTTGCTATTCACAAAGGTGCCTTGCTGAAAATATCTGGAATTCTCGGCATATCAAATTCAAATTTTTAGGCTGATGCGTTCCTCATACTGTAAAAAAGAGGGAATAAAAGAGAAGACAATCGAATGATTCACCATCGGAATTTAATCTATTTGAGCAAAAGAATGGTAGGCGGTATGCCATTCAATCTACTCTGAGAGCACAAAATTGATTGAAAATCGTTTTGCGTGGGATGTCTCCCGAACTGAAAAAAAAAGAAGTTTCAGATGAATAATAGAAACAAAATAAAAGGAAGAAGGCTACGTCTACGTCGTTTTTTTTACTGTAACTTTTAAATCAAAACTACCACCTACAAGATGTAATTACATCAGTTTTTGGTTGATTCTGGTTTCTGTCATCAACTAAAAATGCCTGGTTTGACCGATACGACAAACCACCCAAGGGTTAAAAAATTACTGATTTTAGCGGTGTGGTTGGGAGAGAATAAAAGTGAAAAAAGAAGAAAGTAATAGTACAGAGCCGTCAAAAACAATTACAGTAATTCAGTTTGAACCTTCTTCTTCTTCTCTTTCCTGTCAATGGCATGATACTGAAATGTTTTTTGCAATTTGTAGTTTGACAAGTTACAAGATAGGACGTCATCAAAATAATGGAATGATTGTGATCTATTCCTTCCGAATTGTTCAACAGTACAATTCAACAAACAGTTGATAACGACTGATGACGTCGTCGTCGTTTTTTTGATGAT</canonical>
            <polymorphic>ATCAGAGGAAATACGTTAAATGTTTTGCATCAAAACTCTTTGAGGCGAGGATCTAACTAAGGCCTAAGTTACGGATTTTATTCTACGACTGATCTGCAATCAGCCTAATCAAACTCTTCAGAATTCGGAGCCTCTCAGCGGCAAATATGAATTAATGAGGTCTACGTTCAACTTTCGAACAGTCAATTTTTCAAATGCGCTCTCTCTTTTTTGATACCTCTCTAAATATCTAGCATAACGTTTCGAAGTTTTCTGTTGCTATTCACAAAGGTGCCTTGCTGAAAATATCTGGAATTCTCGGCATATCAAATTCAAATTTTTAGGCTGATGCGTTCCTCATACTGTAAAAAAGAGGGAATAAAAGAGAAGACAATCGAATGATTCACCATCGGAATTTAATCTATTTGAGCAAAAGAATGGTAGGCGGTATGCCATTCAATCTACTCTGAGAGCACAAAATTGATTGAAAATCGTTTTGCGTGGGATGTCTCCCGAACTGWAAAAAAAAGAAGTTTCAGATGAATAATAGAAACAAAATAAAAGGAAGAAGGCTACGTCTACGTCGTTTTTTTTACTGTAACTTTTAAATCAAAACTACCACCTACAAGATGTAATTACATCAGTTTTTGGTTGATTCTGGTTTCTGTCATCAACTAAAAATGCCTGGTTTGACCGATACGACAAACCACCCAAGGGTTAAAAAATTACTGATTTTAGCGGTGTGGTTGGGAGAGAATAAAAGTGAAAAAAGAAGAAAGTAATAGTACAGAGCCGTCAAAAACAATTACAGTAATTCAGTTTGAACCTTCTTCTTCTTCTCTTTCCTGTCAATGGCATGATACTGAAATGTTTTTTGCAATTTGTAGTTTGACAAGTTACAAGATAGGACGTCATCAAAATAATGGAATGATTGTGATCTATTCCTTCCGAATTGTTCAACAGTACAATTCAACAAACAGTTGATAACGACTGATGACGTCGTCGTCGTTTTTTTGATGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCGGAATTTAATCTATTTGAG</pcr_primer_p1>
		<pcr_primer_p2>AGAATCAACCAAAAACTGATGTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CATCGGAATTTAATCTATTTGAGCAAAAGAATGGTAGGCGGTATGCCATTCAATCTACTCTGAGAGCACAAAATTGATTGAAAATCGTTTTGCGTGGGATGTCTCCCGAACTGAAAAAAAAAGAAGTTTCAGATGAATAATAGAAACAAAATAAAAGGAAGAAGGCTACGTCTACGTCGTTTTTTTTACTGTAACTTTTAAATCAAAACTACCACCTACAAGATGTAATTACATCAGTTTTTGGTTGATTCT</canonical_amplicon>
		<polymorphic_amplicon>CATCGGAATTTAATCTATTTGAGCAAAAGAATGGTAGGCGGTATGCCATTCAATCTACTCTGAGAGCACAAAATTGATTGAAAATCGTTTTGCGTGGGATGTCTCCCGAACTGWAAAAAAAAGAAGTTTCAGATGAATAATAGAAACAAAATAAAAGGAAGAAGGCTACGTCTACGTCGTTTTTTTTACTGTAACTTTTAAATCAAAACTACCACCTACAAGATGTAATTACATCAGTTTTTGGTTGATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28333</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>944803</contig_pos>
        <strand>+</strand>
        <context>GTCTACGTCG[C/T]TTTTTTTACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGATGAATAATAGAAACAAAATAAAAGGAAGAAGGCTACGTCTACGTCG</left_flank>
        <right_flank>TTTTTTTACTGTAACTTTTAAATCAAAACTACCACCTACAAGATGTAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTACGGATTTTATTCTACGACTGATCTGCAATCAGCCTAATCAAACTCTTCAGAATTCGGAGCCTCTCAGCGGCAAATATGAATTAATGAGGTCTACGTTCAACTTTCGAACAGTCAATTTTTCAAATGCGCTCTCTCTTTTTTGATACCTCTCTAAATATCTAGCATAACGTTTCGAAGTTTTCTGTTGCTATTCACAAAGGTGCCTTGCTGAAAATATCTGGAATTCTCGGCATATCAAATTCAAATTTTTAGGCTGATGCGTTCCTCATACTGTAAAAAAGAGGGAATAAAAGAGAAGACAATCGAATGATTCACCATCGGAATTTAATCTATTTGAGCAAAAGAATGGTAGGCGGTATGCCATTCAATCTACTCTGAGAGCACAAAATTGATTGAAAATCGTTTTGCGTGGGATGTCTCCCGAACTGAAAAAAAAAGAAGTTTCAGATGAATAATAGAAACAAAATAAAAGGAAGAAGGCTACGTCTACGTCGTTTTTTTTACTGTAACTTTTAAATCAAAACTACCACCTACAAGATGTAATTACATCAGTTTTTGGTTGATTCTGGTTTCTGTCATCAACTAAAAATGCCTGGTTTGACCGATACGACAAACCACCCAAGGGTTAAAAAATTACTGATTTTAGCGGTGTGGTTGGGAGAGAATAAAAGTGAAAAAAGAAGAAAGTAATAGTACAGAGCCGTCAAAAACAATTACAGTAATTCAGTTTGAACCTTCTTCTTCTTCTCTTTCCTGTCAATGGCATGATACTGAAATGTTTTTTGCAATTTGTAGTTTGACAAGTTACAAGATAGGACGTCATCAAAATAATGGAATGATTGTGATCTATTCCTTCCGAATTGTTCAACAGTACAATTCAACAAACAGTTGATAACGACTGATGACGTCGTCGTCGTTTTTTTGATGATGTTTGGAATTCTCATCATTCCAAAAAATCATTTATTCTTTTTCGTATTCTGAACATATATAGTTTC</canonical>
            <polymorphic>AGTTACGGATTTTATTCTACGACTGATCTGCAATCAGCCTAATCAAACTCTTCAGAATTCGGAGCCTCTCAGCGGCAAATATGAATTAATGAGGTCTACGTTCAACTTTCGAACAGTCAATTTTTCAAATGCGCTCTCTCTTTTTTGATACCTCTCTAAATATCTAGCATAACGTTTCGAAGTTTTCTGTTGCTATTCACAAAGGTGCCTTGCTGAAAATATCTGGAATTCTCGGCATATCAAATTCAAATTTTTAGGCTGATGCGTTCCTCATACTGTAAAAAAGAGGGAATAAAAGAGAAGACAATCGAATGATTCACCATCGGAATTTAATCTATTTGAGCAAAAGAATGGTAGGCGGTATGCCATTCAATCTACTCTGAGAGCACAAAATTGATTGAAAATCGTTTTGCGTGGGATGTCTCCCGAACTGAAAAAAAAAGAAGTTTCAGATGAATAATAGAAACAAAATAAAAGGAAGAAGGCTACGTCTACGTCGYTTTTTTTACTGTAACTTTTAAATCAAAACTACCACCTACAAGATGTAATTACATCAGTTTTTGGTTGATTCTGGTTTCTGTCATCAACTAAAAATGCCTGGTTTGACCGATACGACAAACCACCCAAGGGTTAAAAAATTACTGATTTTAGCGGTGTGGTTGGGAGAGAATAAAAGTGAAAAAAGAAGAAAGTAATAGTACAGAGCCGTCAAAAACAATTACAGTAATTCAGTTTGAACCTTCTTCTTCTTCTCTTTCCTGTCAATGGCATGATACTGAAATGTTTTTTGCAATTTGTAGTTTGACAAGTTACAAGATAGGACGTCATCAAAATAATGGAATGATTGTGATCTATTCCTTCCGAATTGTTCAACAGTACAATTCAACAAACAGTTGATAACGACTGATGACGTCGTCGTCGTTTTTTTGATGATGTTTGGAATTCTCATCATTCCAAAAAATCATTTATTCTTTTTCGTATTCTGAACATATATAGTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCGGAATTTAATCTATTTGAG</pcr_primer_p1>
		<pcr_primer_p2>AGAATCAACCAAAAACTGATGTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CATCGGAATTTAATCTATTTGAGCAAAAGAATGGTAGGCGGTATGCCATTCAATCTACTCTGAGAGCACAAAATTGATTGAAAATCGTTTTGCGTGGGATGTCTCCCGAACTGAAAAAAAAAGAAGTTTCAGATGAATAATAGAAACAAAATAAAAGGAAGAAGGCTACGTCTACGTCGTTTTTTTTACTGTAACTTTTAAATCAAAACTACCACCTACAAGATGTAATTACATCAGTTTTTGGTTGATTCT</canonical_amplicon>
		<polymorphic_amplicon>CATCGGAATTTAATCTATTTGAGCAAAAGAATGGTAGGCGGTATGCCATTCAATCTACTCTGAGAGCACAAAATTGATTGAAAATCGTTTTGCGTGGGATGTCTCCCGAACTGAAAAAAAAAGAAGTTTCAGATGAATAATAGAAACAAAATAAAAGGAAGAAGGCTACGTCTACGTCGYTTTTTTTACTGTAACTTTTAAATCAAAACTACCACCTACAAGATGTAATTACATCAGTTTTTGGTTGATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28334</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>991449</contig_pos>
        <strand>+</strand>
        <context>GATATTTGGC[A/C]TGTTAGCTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGTATATATGAATGTTTCCATTTTTATTATTGTTTCTTTCGATATTTGGC</left_flank>
        <right_flank>TGTTAGCTGTCGGGTTTCAAACTGATTAATTCGTATTATCCCTGGTTTTG</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTCAAGTCTAGGTACTTCTATGATTGCCCAAAAATGAACGGCAAAGCAACTTTGACCAGCAATAACTCAGCTAATTTGAAACTTAGCCAGTTTACTGATGAATATTTGAATTTTTGAAATCAAAATTTGAGTCCAGTACAACGCTTCACTAAAATTTTTTGATAGTACAAACTTTAGCAAATTATGCGCCACTCTGTATTCTTAGTTCTGGACGATAACATTAAAATTTCATGAGATAAGAGTCCATCTGAAATCTATTATTCCAGGTCGTTGGAACACTTCTCCGCGCTCGTAAACACAAAATGATCGATTTCGAGGGAGAAATGTTATTTCAAAAGAGAGATGATCATGTTATAATCACTCTTCTTCTCGAAGGATCAGAACTAAAGGCGGCTATTCGAGCACATGCAGCAGCTAATCCAAAAGATTGAACAATAACTGAAATGTTGTATATATGAATGTTTCCATTTTTATTATTGTTTCTTTCGATATTTGGCATGTTAGCTGTCGGGTTTCAAACTGATTAATTCGTATTATCCCTGGTTTTGTATTGTACTCCTAAAAATCAATAAATCTTTTTTTCCATGTCTCCAGAGAGATTTGTAGAGTTTTTATAGGGCTGCATGTTATCAAATTGAGCGAAAAAAGTTCAAGTAAACCTATCATTAGAGGGAGGGAAAGCATTCTAGAATCCCGCCAAAGAAACTCGTTTTTTTATTTCTTCAACTTGTAGTATAGCTAAGTTGGCTGAAAATCATCTCAGTGTGTTTTAATGAGCATGAAAAAATATTATGAGACTGCTTGGCAACGGATGTGGAATGAGCATGCCTATCAAGAGGGATTATGAAGGAGAAGAAGAAGAAGAAGAGGCACGCAAAAGAAGGAAAAGGAGGTCATCAGCAAAAGAGAAGAGAAACGGAAAGATACTACACACCTGAGGAGCTTTTAATATACATTTCCAAATTCGCTCGCTTACTTCCCATCTTTTTCGACTCATT</canonical>
            <polymorphic>TCCTCAAGTCTAGGTACTTCTATGATTGCCCAAAAATGAACGGCAAAGCAACTTTGACCAGCAATAACTCAGCTAATTTGAAACTTAGCCAGTTTACTGATGAATATTTGAATTTTTGAAATCAAAATTTGAGTCCAGTACAACGCTTCACTAAAATTTTTTGATAGTACAAACTTTAGCAAATTATGCGCCACTCTGTATTCTTAGTTCTGGACGATAACATTAAAATTTCATGAGATAAGAGTCCATCTGAAATCTATTATTCCAGGTCGTTGGAACACTTCTCCGCGCTCGTAAACACAAAATGATCGATTTCGAGGGAGAAATGTTATTTCAAAAGAGAGATGATCATGTTATAATCACTCTTCTTCTCGAAGGATCAGAACTAAAGGCGGCTATTCGAGCACATGCAGCAGCTAATCCAAAAGATTGAACAATAACTGAAATGTTGTATATATGAATGTTTCCATTTTTATTATTGTTTCTTTCGATATTTGGCMTGTTAGCTGTCGGGTTTCAAACTGATTAATTCGTATTATCCCTGGTTTTGTATTGTACTCCTAAAAATCAATAAATCTTTTTTTCCATGTCTCCAGAGAGATTTGTAGAGTTTTTATAGGGCTGCATGTTATCAAATTGAGCGAAAAAAGTTCAAGTAAACCTATCATTAGAGGGAGGGAAAGCATTCTAGAATCCCGCCAAAGAAACTCGTTTTTTTATTTCTTCAACTTGTAGTATAGCTAAGTTGGCTGAAAATCATCTCAGTGTGTTTTAATGAGCATGAAAAAATATTATGAGACTGCTTGGCAACGGATGTGGAATGAGCATGCCTATCAAGAGGGATTATGAAGGAGAAGAAGAAGAAGAAGAGGCACGCAAAAGAAGGAAAAGGAGGTCATCAGCAAAAGAGAAGAGAAACGGAAAGATACTACACACCTGAGGAGCTTTTAATATACATTTCCAAATTCGCTCGCTTACTTCCCATCTTTTTCGACTCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>410 201 171 126 92</canonical_bands>
                <polymorphic_bands>410 218 201 171</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>232 174 155 118 92 87 57 46 39</canonical_bands>
                <polymorphic_bands>232 179 174 155 118 57 46 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTGAACAATAACTGAAATGTTG</pcr_primer_p1>
		<pcr_primer_p2>CCTCCCTCTAATGATAGGTTTAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GATTGAACAATAACTGAAATGTTGTATATATGAATGTTTCCATTTTTATTATTGTTTCTTTCGATATTTGGCATGTTAGCTGTCGGGTTTCAAACTGATTAATTCGTATTATCCCTGGTTTTGTATTGTACTCCTAAAAATCAATAAATCTTTTTTTCCATGTCTCCAGAGAGATTTGTAGAGTTTTTATAGGGCTGCATGTTATCAAATTGAGCGAAAAAAGTTCAAGTAAACCTATCATTAGAGGGAGG</canonical_amplicon>
		<polymorphic_amplicon>GATTGAACAATAACTGAAATGTTGTATATATGAATGTTTCCATTTTTATTATTGTTTCTTTCGATATTTGGCMTGTTAGCTGTCGGGTTTCAAACTGATTAATTCGTATTATCCCTGGTTTTGTATTGTACTCCTAAAAATCAATAAATCTTTTTTTCCATGTCTCCAGAGAGATTTGTAGAGTTTTTATAGGGCTGCATGTTATCAAATTGAGCGAAAAAAGTTCAAGTAAACCTATCATTAGAGGGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28335</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>991481</contig_pos>
        <strand>+</strand>
        <context>CTGATTAATT[C/G]GTATTATCCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTCTTTCGATATTTGGCATGTTAGCTGTCGGGTTTCAAACTGATTAATT</left_flank>
        <right_flank>GTATTATCCCTGGTTTTGTATTGTACTCCTAAAAATCAATAAATCTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATGAACGGCAAAGCAACTTTGACCAGCAATAACTCAGCTAATTTGAAACTTAGCCAGTTTACTGATGAATATTTGAATTTTTGAAATCAAAATTTGAGTCCAGTACAACGCTTCACTAAAATTTTTTGATAGTACAAACTTTAGCAAATTATGCGCCACTCTGTATTCTTAGTTCTGGACGATAACATTAAAATTTCATGAGATAAGAGTCCATCTGAAATCTATTATTCCAGGTCGTTGGAACACTTCTCCGCGCTCGTAAACACAAAATGATCGATTTCGAGGGAGAAATGTTATTTCAAAAGAGAGATGATCATGTTATAATCACTCTTCTTCTCGAAGGATCAGAACTAAAGGCGGCTATTCGAGCACATGCAGCAGCTAATCCAAAAGATTGAACAATAACTGAAATGTTGTATATATGAATGTTTCCATTTTTATTATTGTTTCTTTCGATATTTGGCATGTTAGCTGTCGGGTTTCAAACTGATTAATTCGTATTATCCCTGGTTTTGTATTGTACTCCTAAAAATCAATAAATCTTTTTTTCCATGTCTCCAGAGAGATTTGTAGAGTTTTTATAGGGCTGCATGTTATCAAATTGAGCGAAAAAAGTTCAAGTAAACCTATCATTAGAGGGAGGGAAAGCATTCTAGAATCCCGCCAAAGAAACTCGTTTTTTTATTTCTTCAACTTGTAGTATAGCTAAGTTGGCTGAAAATCATCTCAGTGTGTTTTAATGAGCATGAAAAAATATTATGAGACTGCTTGGCAACGGATGTGGAATGAGCATGCCTATCAAGAGGGATTATGAAGGAGAAGAAGAAGAAGAAGAGGCACGCAAAAGAAGGAAAAGGAGGTCATCAGCAAAAGAGAAGAGAAACGGAAAGATACTACACACCTGAGGAGCTTTTAATATACATTTCCAAATTCGCTCGCTTACTTCCCATCTTTTTCGACTCATTCTTGTTTTTCGATTCGAATTTTAGTTCCTTTG</canonical>
            <polymorphic>AAAATGAACGGCAAAGCAACTTTGACCAGCAATAACTCAGCTAATTTGAAACTTAGCCAGTTTACTGATGAATATTTGAATTTTTGAAATCAAAATTTGAGTCCAGTACAACGCTTCACTAAAATTTTTTGATAGTACAAACTTTAGCAAATTATGCGCCACTCTGTATTCTTAGTTCTGGACGATAACATTAAAATTTCATGAGATAAGAGTCCATCTGAAATCTATTATTCCAGGTCGTTGGAACACTTCTCCGCGCTCGTAAACACAAAATGATCGATTTCGAGGGAGAAATGTTATTTCAAAAGAGAGATGATCATGTTATAATCACTCTTCTTCTCGAAGGATCAGAACTAAAGGCGGCTATTCGAGCACATGCAGCAGCTAATCCAAAAGATTGAACAATAACTGAAATGTTGTATATATGAATGTTTCCATTTTTATTATTGTTTCTTTCGATATTTGGCATGTTAGCTGTCGGGTTTCAAACTGATTAATTSGTATTATCCCTGGTTTTGTATTGTACTCCTAAAAATCAATAAATCTTTTTTTCCATGTCTCCAGAGAGATTTGTAGAGTTTTTATAGGGCTGCATGTTATCAAATTGAGCGAAAAAAGTTCAAGTAAACCTATCATTAGAGGGAGGGAAAGCATTCTAGAATCCCGCCAAAGAAACTCGTTTTTTTATTTCTTCAACTTGTAGTATAGCTAAGTTGGCTGAAAATCATCTCAGTGTGTTTTAATGAGCATGAAAAAATATTATGAGACTGCTTGGCAACGGATGTGGAATGAGCATGCCTATCAAGAGGGATTATGAAGGAGAAGAAGAAGAAGAAGAGGCACGCAAAAGAAGGAAAAGGAGGTCATCAGCAAAAGAGAAGAGAAACGGAAAGATACTACACACCTGAGGAGCTTTTAATATACATTTCCAAATTCGCTCGCTTACTTCCCATCTTTTTCGACTCATTCTTGTTTTTCGATTCGAATTTTAGTTCCTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTGAACAATAACTGAAATGTTG</pcr_primer_p1>
		<pcr_primer_p2>CCTCCCTCTAATGATAGGTTTAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GATTGAACAATAACTGAAATGTTGTATATATGAATGTTTCCATTTTTATTATTGTTTCTTTCGATATTTGGCATGTTAGCTGTCGGGTTTCAAACTGATTAATTCGTATTATCCCTGGTTTTGTATTGTACTCCTAAAAATCAATAAATCTTTTTTTCCATGTCTCCAGAGAGATTTGTAGAGTTTTTATAGGGCTGCATGTTATCAAATTGAGCGAAAAAAGTTCAAGTAAACCTATCATTAGAGGGAGG</canonical_amplicon>
		<polymorphic_amplicon>GATTGAACAATAACTGAAATGTTGTATATATGAATGTTTCCATTTTTATTATTGTTTCTTTCGATATTTGGCATGTTAGCTGTCGGGTTTCAAACTGATTAATTSGTATTATCCCTGGTTTTGTATTGTACTCCTAAAAATCAATAAATCTTTTTTTCCATGTCTCCAGAGAGATTTGTAGAGTTTTTATAGGGCTGCATGTTATCAAATTGAGCGAAAAAAGTTCAAGTAAACCTATCATTAGAGGGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28336</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>991644</contig_pos>
        <strand>+</strand>
        <context>ATTCTAGAAT[C/T]CCGCCAAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAGTTCAAGTAAACCTATCATTAGAGGGAGGGAAAGCATTCTAGAAT</left_flank>
        <right_flank>CCGCCAAAGAAACTCGTTTTTTTATTTCTTCAACTTGTAGTATAGCTAAG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTATTCTTAGTTCTGGACGATAACATTAAAATTTCATGAGATAAGAGTCCATCTGAAATCTATTATTCCAGGTCGTTGGAACACTTCTCCGCGCTCGTAAACACAAAATGATCGATTTCGAGGGAGAAATGTTATTTCAAAAGAGAGATGATCATGTTATAATCACTCTTCTTCTCGAAGGATCAGAACTAAAGGCGGCTATTCGAGCACATGCAGCAGCTAATCCAAAAGATTGAACAATAACTGAAATGTTGTATATATGAATGTTTCCATTTTTATTATTGTTTCTTTCGATATTTGGCATGTTAGCTGTCGGGTTTCAAACTGATTAATTCGTATTATCCCTGGTTTTGTATTGTACTCCTAAAAATCAATAAATCTTTTTTTCCATGTCTCCAGAGAGATTTGTAGAGTTTTTATAGGGCTGCATGTTATCAAATTGAGCGAAAAAAGTTCAAGTAAACCTATCATTAGAGGGAGGGAAAGCATTCTAGAATCCCGCCAAAGAAACTCGTTTTTTTATTTCTTCAACTTGTAGTATAGCTAAGTTGGCTGAAAATCATCTCAGTGTGTTTTAATGAGCATGAAAAAATATTATGAGACTGCTTGGCAACGGATGTGGAATGAGCATGCCTATCAAGAGGGATTATGAAGGAGAAGAAGAAGAAGAAGAGGCACGCAAAAGAAGGAAAAGGAGGTCATCAGCAAAAGAGAAGAGAAACGGAAAGATACTACACACCTGAGGAGCTTTTAATATACATTTCCAAATTCGCTCGCTTACTTCCCATCTTTTTCGACTCATTCTTGTTTTTCGATTCGAATTTTAGTTCCTTTGCTAACTGTGACATTTTTAAAGTTTTCCAAACGTTTTTTTCAGAAATTGAAAAGAAAAATGTCTAGAAGGAAACGAACTGACTCTTCTGGTTTCTCGGATATGTACAGTGCTCCAAAACTATCCAATACCAATTTGGCTCGAGAGATAAGGAAAAGAGAATTCA</canonical>
            <polymorphic>CTGTATTCTTAGTTCTGGACGATAACATTAAAATTTCATGAGATAAGAGTCCATCTGAAATCTATTATTCCAGGTCGTTGGAACACTTCTCCGCGCTCGTAAACACAAAATGATCGATTTCGAGGGAGAAATGTTATTTCAAAAGAGAGATGATCATGTTATAATCACTCTTCTTCTCGAAGGATCAGAACTAAAGGCGGCTATTCGAGCACATGCAGCAGCTAATCCAAAAGATTGAACAATAACTGAAATGTTGTATATATGAATGTTTCCATTTTTATTATTGTTTCTTTCGATATTTGGCATGTTAGCTGTCGGGTTTCAAACTGATTAATTCGTATTATCCCTGGTTTTGTATTGTACTCCTAAAAATCAATAAATCTTTTTTTCCATGTCTCCAGAGAGATTTGTAGAGTTTTTATAGGGCTGCATGTTATCAAATTGAGCGAAAAAAGTTCAAGTAAACCTATCATTAGAGGGAGGGAAAGCATTCTAGAATYCCGCCAAAGAAACTCGTTTTTTTATTTCTTCAACTTGTAGTATAGCTAAGTTGGCTGAAAATCATCTCAGTGTGTTTTAATGAGCATGAAAAAATATTATGAGACTGCTTGGCAACGGATGTGGAATGAGCATGCCTATCAAGAGGGATTATGAAGGAGAAGAAGAAGAAGAAGAGGCACGCAAAAGAAGGAAAAGGAGGTCATCAGCAAAAGAGAAGAGAAACGGAAAGATACTACACACCTGAGGAGCTTTTAATATACATTTCCAAATTCGCTCGCTTACTTCCCATCTTTTTCGACTCATTCTTGTTTTTCGATTCGAATTTTAGTTCCTTTGCTAACTGTGACATTTTTAAAGTTTTCCAAACGTTTTTTTCAGAAATTGAAAAGAAAAATGTCTAGAAGGAAACGAACTGACTCTTCTGGTTTCTCGGATATGTACAGTGCTCCAAAACTATCCAATACCAATTTGGCTCGAGAGATAAGGAAAAGAGAATTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>449 302 100 84 47 18</canonical_bands>
                <polymorphic_bands>751 100 84 47 18</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>496 320 184</canonical_bands>
                <polymorphic_bands>816 184</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTGGTTTTGTATTGTACTCCTA</pcr_primer_p1>
		<pcr_primer_p2>TTTCATGCTCATTAAAACACAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CCTGGTTTTGTATTGTACTCCTAAAAATCAATAAATCTTTTTTTCCATGTCTCCAGAGAGATTTGTAGAGTTTTTATAGGGCTGCATGTTATCAAATTGAGCGAAAAAAGTTCAAGTAAACCTATCATTAGAGGGAGGGAAAGCATTCTAGAATCCCGCCAAAGAAACTCGTTTTTTTATTTCTTCAACTTGTAGTATAGCTAAGTTGGCTGAAAATCATCTCAGTGTGTTTTAATGAGCATGAAA</canonical_amplicon>
		<polymorphic_amplicon>CCTGGTTTTGTATTGTACTCCTAAAAATCAATAAATCTTTTTTTCCATGTCTCCAGAGAGATTTGTAGAGTTTTTATAGGGCTGCATGTTATCAAATTGAGCGAAAAAAGTTCAAGTAAACCTATCATTAGAGGGAGGGAAAGCATTCTAGAATYCCGCCAAAGAAACTCGTTTTTTTATTTCTTCAACTTGTAGTATAGCTAAGTTGGCTGAAAATCATCTCAGTGTGTTTTAATGAGCATGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28337</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>991778</contig_pos>
        <strand>+</strand>
        <context>GAATGAGCAT[C/G]YCTATCAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCATGAAAAAATATTATGAGACTGCTTGGCAACGGATGTGGAATGAGCAT</left_flank>
        <right_flank>CCTATCAAGAGGGATTATGAAGGAGAAGAAGAAGAAGAAGAGGCACGCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTCAAAAGAGAGATGATCATGTTATAATCACTCTTCTTCTCGAAGGATCAGAACTAAAGGCGGCTATTCGAGCACATGCAGCAGCTAATCCAAAAGATTGAACAATAACTGAAATGTTGTATATATGAATGTTTCCATTTTTATTATTGTTTCTTTCGATATTTGGCATGTTAGCTGTCGGGTTTCAAACTGATTAATTCGTATTATCCCTGGTTTTGTATTGTACTCCTAAAAATCAATAAATCTTTTTTTCCATGTCTCCAGAGAGATTTGTAGAGTTTTTATAGGGCTGCATGTTATCAAATTGAGCGAAAAAAGTTCAAGTAAACCTATCATTAGAGGGAGGGAAAGCATTCTAGAATCCCGCCAAAGAAACTCGTTTTTTTATTTCTTCAACTTGTAGTATAGCTAAGTTGGCTGAAAATCATCTCAGTGTGTTTTAATGAGCATGAAAAAATATTATGAGACTGCTTGGCAACGGATGTGGAATGAGCATGCCTATCAAGAGGGATTATGAAGGAGAAGAAGAAGAAGAAGAGGCACGCAAAAGAAGGAAAAGGAGGTCATCAGCAAAAGAGAAGAGAAACGGAAAGATACTACACACCTGAGGAGCTTTTAATATACATTTCCAAATTCGCTCGCTTACTTCCCATCTTTTTCGACTCATTCTTGTTTTTCGATTCGAATTTTAGTTCCTTTGCTAACTGTGACATTTTTAAAGTTTTCCAAACGTTTTTTTCAGAAATTGAAAAGAAAAATGTCTAGAAGGAAACGAACTGACTCTTCTGGTTTCTCGGATATGTACAGTGCTCCAAAACTATCCAATACCAATTTGGCTCGAGAGATAAGGAAAAGAGAATTCAGCTATGTAGATCGACAGGTTAGTGAGATGACGGAAAGCTAAATTTTTTCCTTTCAAAATTATTATTAAGAAGAGAAGACATGAGTAATAAAAAAGCTCTTTAAAAGATACGAAATTTTTTTTTGCATGAAACTT</canonical>
            <polymorphic>TATTTCAAAAGAGAGATGATCATGTTATAATCACTCTTCTTCTCGAAGGATCAGAACTAAAGGCGGCTATTCGAGCACATGCAGCAGCTAATCCAAAAGATTGAACAATAACTGAAATGTTGTATATATGAATGTTTCCATTTTTATTATTGTTTCTTTCGATATTTGGCATGTTAGCTGTCGGGTTTCAAACTGATTAATTCGTATTATCCCTGGTTTTGTATTGTACTCCTAAAAATCAATAAATCTTTTTTTCCATGTCTCCAGAGAGATTTGTAGAGTTTTTATAGGGCTGCATGTTATCAAATTGAGCGAAAAAAGTTCAAGTAAACCTATCATTAGAGGGAGGGAAAGCATTCTAGAATCCCGCCAAAGAAACTCGTTTTTTTATTTCTTCAACTTGTAGTATAGCTAAGTTGGCTGAAAATCATCTCAGTGTGTTTTAATGAGCATGAAAAAATATTATGAGACTGCTTGGCAACGGATGTGGAATGAGCATSCCTATCAAGAGGGATTATGAAGGAGAAGAAGAAGAAGAAGAGGCACGCAAAAGAAGGAAAAGGAGGTCATCAGCAAAAGAGAAGAGAAACGGAAAGATACTACACACCTGAGGAGCTTTTAATATACATTTCCAAATTCGCTCGCTTACTTCCCATCTTTTTCGACTCATTCTTGTTTTTCGATTCGAATTTTAGTTCCTTTGCTAACTGTGACATTTTTAAAGTTTTCCAAACGTTTTTTTCAGAAATTGAAAAGAAAAATGTCTAGAAGGAAACGAACTGACTCTTCTGGTTTCTCGGATATGTACAGTGCTCCAAAACTATCCAATACCAATTTGGCTCGAGAGATAAGGAAAAGAGAATTCAGCTATGTAGATCGACAGGTTAGTGAGATGACGGAAAGCTAAATTTTTTCCTTTCAAAATTATTATTAAGAAGAGAAGACATGAGTAATAAAAAAGCTCTTTAAAAGATACGAAATTTTTTTTTGCATGAAACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCATGC</site>
                <isoschizomers>
                    <enzyme>BbuI</enzyme>
                    <enzyme>PaeI</enzyme>
                    <enzyme>SpaHI</enzyme>
                    <enzyme>SphI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 358 97 47</canonical_bands>
                <polymorphic_bands>545 358 97</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>500 201 126 92 81</canonical_bands>
                <polymorphic_bands>701 126 92 81</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>448 155 92 87 57 46 46 39 21 9</canonical_bands>
                <polymorphic_bands>494 155 92 87 57 46 39 21 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATCTCAGTGTGTTTTAATGAG</pcr_primer_p1>
		<pcr_primer_p2>AACAAGAATGAGTCGAAAAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCATCTCAGTGTGTTTTAATGAGCATGAAAAAATATTATGAGACTGCTTGGCAACGGATGTGGAATGAGCATGCCTATCAAGAGGGATTATGAAGGAGAAGAAGAAGAAGAAGAGGCACGCAAAAGAAGGAAAAGGAGGTCATCAGCAAAAGAGAAGAGAAACGGAAAGATACTACACACCTGAGGAGCTTTTAATATACATTTCCAAATTCGCTCGCTTACTTCCCATCTTTTTCGACTCATTCTTGTT</canonical_amplicon>
		<polymorphic_amplicon>TCATCTCAGTGTGTTTTAATGAGCATGAAAAAATATTATGAGACTGCTTGGCAACGGATGTGGAATGAGCATSCCTATCAAGAGGGATTATGAAGGAGAAGAAGAAGAAGAAGAGGCACGCAAAAGAAGGAAAAGGAGGTCATCAGCAAAAGAGAAGAGAAACGGAAAGATACTACACACCTGAGGAGCTTTTAATATACATTTCCAAATTCGCTCGCTTACTTCCCATCTTTTTCGACTCATTCTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28338</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>991779</contig_pos>
        <strand>+</strand>
        <context>AATGAGCATS[C/T]CTATCAAGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATGAAAAAATATTATGAGACTGCTTGGCAACGGATGTGGAATGAGCATG</left_flank>
        <right_flank>CTATCAAGAGGGATTATGAAGGAGAAGAAGAAGAAGAAGAGGCACGCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCAAAAGAGAGATGATCATGTTATAATCACTCTTCTTCTCGAAGGATCAGAACTAAAGGCGGCTATTCGAGCACATGCAGCAGCTAATCCAAAAGATTGAACAATAACTGAAATGTTGTATATATGAATGTTTCCATTTTTATTATTGTTTCTTTCGATATTTGGCATGTTAGCTGTCGGGTTTCAAACTGATTAATTCGTATTATCCCTGGTTTTGTATTGTACTCCTAAAAATCAATAAATCTTTTTTTCCATGTCTCCAGAGAGATTTGTAGAGTTTTTATAGGGCTGCATGTTATCAAATTGAGCGAAAAAAGTTCAAGTAAACCTATCATTAGAGGGAGGGAAAGCATTCTAGAATCCCGCCAAAGAAACTCGTTTTTTTATTTCTTCAACTTGTAGTATAGCTAAGTTGGCTGAAAATCATCTCAGTGTGTTTTAATGAGCATGAAAAAATATTATGAGACTGCTTGGCAACGGATGTGGAATGAGCATGCCTATCAAGAGGGATTATGAAGGAGAAGAAGAAGAAGAAGAGGCACGCAAAAGAAGGAAAAGGAGGTCATCAGCAAAAGAGAAGAGAAACGGAAAGATACTACACACCTGAGGAGCTTTTAATATACATTTCCAAATTCGCTCGCTTACTTCCCATCTTTTTCGACTCATTCTTGTTTTTCGATTCGAATTTTAGTTCCTTTGCTAACTGTGACATTTTTAAAGTTTTCCAAACGTTTTTTTCAGAAATTGAAAAGAAAAATGTCTAGAAGGAAACGAACTGACTCTTCTGGTTTCTCGGATATGTACAGTGCTCCAAAACTATCCAATACCAATTTGGCTCGAGAGATAAGGAAAAGAGAATTCAGCTATGTAGATCGACAGGTTAGTGAGATGACGGAAAGCTAAATTTTTTCCTTTCAAAATTATTATTAAGAAGAGAAGACATGAGTAATAAAAAAGCTCTTTAAAAGATACGAAATTTTTTTTTGCATGAAACTTT</canonical>
            <polymorphic>ATTTCAAAAGAGAGATGATCATGTTATAATCACTCTTCTTCTCGAAGGATCAGAACTAAAGGCGGCTATTCGAGCACATGCAGCAGCTAATCCAAAAGATTGAACAATAACTGAAATGTTGTATATATGAATGTTTCCATTTTTATTATTGTTTCTTTCGATATTTGGCATGTTAGCTGTCGGGTTTCAAACTGATTAATTCGTATTATCCCTGGTTTTGTATTGTACTCCTAAAAATCAATAAATCTTTTTTTCCATGTCTCCAGAGAGATTTGTAGAGTTTTTATAGGGCTGCATGTTATCAAATTGAGCGAAAAAAGTTCAAGTAAACCTATCATTAGAGGGAGGGAAAGCATTCTAGAATCCCGCCAAAGAAACTCGTTTTTTTATTTCTTCAACTTGTAGTATAGCTAAGTTGGCTGAAAATCATCTCAGTGTGTTTTAATGAGCATGAAAAAATATTATGAGACTGCTTGGCAACGGATGTGGAATGAGCATGYCTATCAAGAGGGATTATGAAGGAGAAGAAGAAGAAGAAGAGGCACGCAAAAGAAGGAAAAGGAGGTCATCAGCAAAAGAGAAGAGAAACGGAAAGATACTACACACCTGAGGAGCTTTTAATATACATTTCCAAATTCGCTCGCTTACTTCCCATCTTTTTCGACTCATTCTTGTTTTTCGATTCGAATTTTAGTTCCTTTGCTAACTGTGACATTTTTAAAGTTTTCCAAACGTTTTTTTCAGAAATTGAAAAGAAAAATGTCTAGAAGGAAACGAACTGACTCTTCTGGTTTCTCGGATATGTACAGTGCTCCAAAACTATCCAATACCAATTTGGCTCGAGAGATAAGGAAAAGAGAATTCAGCTATGTAGATCGACAGGTTAGTGAGATGACGGAAAGCTAAATTTTTTCCTTTCAAAATTATTATTAAGAAGAGAAGACATGAGTAATAAAAAAGCTCTTTAAAAGATACGAAATTTTTTTTTGCATGAAACTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCATGC</site>
                <isoschizomers>
                    <enzyme>BbuI</enzyme>
                    <enzyme>PaeI</enzyme>
                    <enzyme>SpaHI</enzyme>
                    <enzyme>SphI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>497 359 97 47</canonical_bands>
                <polymorphic_bands>544 359 97</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>501 201 126 92 80</canonical_bands>
                <polymorphic_bands>702 126 92 80</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATCTCAGTGTGTTTTAATGAG</pcr_primer_p1>
		<pcr_primer_p2>AACAAGAATGAGTCGAAAAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCATCTCAGTGTGTTTTAATGAGCATGAAAAAATATTATGAGACTGCTTGGCAACGGATGTGGAATGAGCATGCCTATCAAGAGGGATTATGAAGGAGAAGAAGAAGAAGAAGAGGCACGCAAAAGAAGGAAAAGGAGGTCATCAGCAAAAGAGAAGAGAAACGGAAAGATACTACACACCTGAGGAGCTTTTAATATACATTTCCAAATTCGCTCGCTTACTTCCCATCTTTTTCGACTCATTCTTGTT</canonical_amplicon>
		<polymorphic_amplicon>TCATCTCAGTGTGTTTTAATGAGCATGAAAAAATATTATGAGACTGCTTGGCAACGGATGTGGAATGAGCATGYCTATCAAGAGGGATTATGAAGGAGAAGAAGAAGAAGAAGAGGCACGCAAAAGAAGGAAAAGGAGGTCATCAGCAAAAGAGAAGAGAAACGGAAAGATACTACACACCTGAGGAGCTTTTAATATACATTTCCAAATTCGCTCGCTTACTTCCCATCTTTTTCGACTCATTCTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28339</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>1051982</contig_pos>
        <strand>+</strand>
        <context>AAAACTTTTC[A/G]AGATAACAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAAAAATGTTTGCGGTCAATAGAAATTGTGAATCAGGAAAAAACTTTTC</left_flank>
        <right_flank>AGATAACAATGTCCATAAAAAATAGTTTTTTTTCACAAAAAAGTTTGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTTTTCTTTTAATCTGAGTTTTTGAATTTCCGAGTTTTTTGATAACACACAATGCCTGAATCGAACATTTTTGGAATTACTCATGTCTCGAATTTCAAACCAAGATTTTCCATTTTTCGATTTTCTGCATAACTTTTCAAAATCTGAAATAAGGAATAGTTCAATTCCTAAATTTCTGTAATTCTGGATTTTTTCATATCCGACATTATTATTTTTCTGGGTTTTCTAATTTCGGAACAGGGTTTTTGAATTTCTCAAATTTCGATTTACCCACGCACATCACTTTTTCTAAACCTTTGGTGCTAAAGCAGAGAATAACACTTACGCTGTTAAAAAGGTCTGAAATTCTGAAAGACCTTATATTCTTGCTTGCAACGGGCCGGGCCGGGCTTTTTTCAGAATTAATCGCTGCGCCGGTTTTCAGAAAAAATTGTTTCCTGTATTTTTATAAAAATGTTTGCGGTCAATAGAAATTGTGAATCAGGAAAAAACTTTTCAAGATAACAATGTCCATAAAAAATAGTTTTTTTTCACAAAAAAGTTTGAAAAGATTTCTGAAATTTTACTTTTTTTTAATTTGGGGAACCCGGGCCCGCCGGACCGGGCCCTGATTTTGCAAGTATGCTTATATTTCCGAACATTCAAAGATCTAACTTTGTAGAATTCTGATTTCTTGTTTCTTGGATCTCTCTGAGTTGTTGAAGTTTTTCTTTTGAAAATTCTTAATTTTGAATTCCGAGTCTCAATTCCTAAAATAGGAATTCCTGAAATAGGAACTTCTGAAACTTCGATTCCTGTATGCCAGAATACCAATAAAAAACCTTTTCTCCGATTTTCCGAGAGTAAACGGTACTCAGGAGGTTCAGCCCAGTAGTGGCGAAATTGTGAATTGAATATGCATTCCCTATTTAATAGTTCTTTTTTCAATTTCTGAAATCCTGAGTTCCGAAATTTTCGATTTTCTGATAATCCAAATCAAAAATTTCTGAAACTCTGAA</canonical>
            <polymorphic>GGTTTTTCTTTTAATCTGAGTTTTTGAATTTCCGAGTTTTTTGATAACACACAATGCCTGAATCGAACATTTTTGGAATTACTCATGTCTCGAATTTCAAACCAAGATTTTCCATTTTTCGATTTTCTGCATAACTTTTCAAAATCTGAAATAAGGAATAGTTCAATTCCTAAATTTCTGTAATTCTGGATTTTTTCATATCCGACATTATTATTTTTCTGGGTTTTCTAATTTCGGAACAGGGTTTTTGAATTTCTCAAATTTCGATTTACCCACGCACATCACTTTTTCTAAACCTTTGGTGCTAAAGCAGAGAATAACACTTACGCTGTTAAAAAGGTCTGAAATTCTGAAAGACCTTATATTCTTGCTTGCAACGGGCCGGGCCGGGCTTTTTTCAGAATTAATCGCTGCGCCGGTTTTCAGAAAAAATTGTTTCCTGTATTTTTATAAAAATGTTTGCGGTCAATAGAAATTGTGAATCAGGAAAAAACTTTTCRAGATAACAATGTCCATAAAAAATAGTTTTTTTTCACAAAAAAGTTTGAAAAGATTTCTGAAATTTTACTTTTTTTTAATTTGGGGAACCCGGGCCCGCCGGACCGGGCCCTGATTTTGCAAGTATGCTTATATTTCCGAACATTCAAAGATCTAACTTTGTAGAATTCTGATTTCTTGTTTCTTGGATCTCTCTGAGTTGTTGAAGTTTTTCTTTTGAAAATTCTTAATTTTGAATTCCGAGTCTCAATTCCTAAAATAGGAATTCCTGAAATAGGAACTTCTGAAACTTCGATTCCTGTATGCCAGAATACCAATAAAAAACCTTTTCTCCGATTTTCCGAGAGTAAACGGTACTCAGGAGGTTCAGCCCAGTAGTGGCGAAATTGTGAATTGAATATGCATTCCCTATTTAATAGTTCTTTTTTCAATTTCTGAAATCCTGAGTTCCGAAATTTTCGATTTTCTGATAATCCAAATCAAAAATTTCTGAAACTCTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATAAAAATGTTTGCGGTCA</pcr_primer_p1>
		<pcr_primer_p2>GAGAGATCCAAGAAACAAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTATAAAAATGTTTGCGGTCAATAGAAATTGTGAATCAGGAAAAAACTTTTCAAGATAACAATGTCCATAAAAAATAGTTTTTTTTCACAAAAAAGTTTGAAAAGATTTCTGAAATTTTACTTTTTTTTAATTTGGGGAACCCGGGCCCGCCGGACCGGGCCCTGATTTTGCAAGTATGCTTATATTTCCGAACATTCAAAGATCTAACTTTGTAGAATTCTGATTTCTTGTTTCTTGGATCTCTC</canonical_amplicon>
		<polymorphic_amplicon>TTATAAAAATGTTTGCGGTCAATAGAAATTGTGAATCAGGAAAAAACTTTTCRAGATAACAATGTCCATAAAAAATAGTTTTTTTTCACAAAAAAGTTTGAAAAGATTTCTGAAATTTTACTTTTTTTTAATTTGGGGAACCCGGGCCCGCCGGACCGGGCCCTGATTTTGCAAGTATGCTTATATTTCCGAACATTCAAAGATCTAACTTTGTAGAATTCTGATTTCTTGTTTCTTGGATCTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28340</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>1056769</contig_pos>
        <strand></strand>
        <context>CTCTATTCGT[T/A]TTCTTCTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTGCTCCTCTCACATAATTTTTTTTCTGCTCCTCCTCTCCTCTATTCGT</left_flank>
        <right_flank>TTCTTCTTTCCCACAGTTTCTCATTTTCAACACTCCCCCTCCCTTTCCCA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAATGTACTTTCAGTTAATGTTGTATTTTTGATTGCTGATTTCAGCTGATCCGCTAATTCAAGAGAACTTGAATTGCTATTATTCCAGTACAAAAAAATCGGAGCTGTGGAAGAGAAACGCCGGTGGCCATGGCCGAAAGTCCCACAACGACAACTACCGTAACCTAAAAATGTTTTTAATTTCCGGATTTATTATTTCGATTTTCGTGCGTTTTTTTGGGAAAATAACAGAAAACCGATAAAAGGAGTAAAAAATGAGAACATAAATGCGAAAAATGAAACTACTAGGTTACGGTAGTTGTCGTTGTGGGACCTTTGGCCACGGTCACCGGAGTTTCTCTTTCACAATTTTTGTATCAGAATGTTATATCACCCCCTTTTTTATGACTTCACGAACACCTGATCACTTTTTTCCCTCCGATCAGCCATCACTCATTTAATCTTTTGATTTGCTCCTCTCACATAATTTTTTTTCTGCTCCTCCTCTCCTCTATTCGTTTTCTTCTTTCCCACAGTTTCTCATTTTCAACACTCCCCCTCCCTTTCCCAAGTATTTCCGTCAAATATCCATTATTTTTCCATTGCTGGTCATTTCGGAAAAACGGCGGAAAACCGTCTCTCGCTGAGGGGGCGTGGTATGTCTCTTTCCGCAAACAAACCGCCCGTATTTGCTCACACGCCGGGGCACCGACGGATCGCTCGCGCCTCGTTTCCGCGCACTTTTCGCGTCACGCGAAATGGGCGGAGCTTCGATTTTCTGTCAGAATGATGAAGAAGACTCAGTTTTCCGCGCGGAAAAAGCGAAGAGAAAAAGAAGGGGTCTGTCTCTAAAAGTTTGTTTATTTTTCGAATTTCGCTCACTGTCATCTCGTAATCTCCAATTCAATGTGTCGTGCGTAACTCCCATTTTTTGAAATCCTTTCTCATCTTTTCCTAGCTTGCTGCACTATTTCCCCCTGTATACTGTAGACATCTTCTTATTGATTGATCCGTTCCATG</canonical>
            <polymorphic>CTAATGTACTTTCAGTTAATGTTGTATTTTTGATTGCTGATTTCAGCTGATCCGCTAATTCAAGAGAACTTGAATTGCTATTATTCCAGTACAAAAAAATCGGAGCTGTGGAAGAGAAACGCCGGTGGCCATGGCCGAAAGTCCCACAACGACAACTACCGTAACCTAAAAATGTTTTTAATTTCCGGATTTATTATTTCGATTTTCGTGCGTTTTTTTGGGAAAATAACAGAAAACCGATAAAAGGAGTAAAAAATGAGAACATAAATGCGAAAAATGAAACTACTAGGTTACGGTAGTTGTCGTTGTGGGACCTTTGGCCACGGTCACCGGAGTTTCTCTTTCACAATTTTTGTATCAGAATGTTATATCACCCCCTTTTTTATGACTTCACGAACACCTGATCACTTTTTTCCCTCCGATCAGCCATCACTCATTTAATCTTTTGATTTGCTCCTCTCACATAATTTTTTTTCTGCTCCTCCTCTCCTCTATTCGTWTTCTTCTTTCCCACAGTTTCTCATTTTCAACACTCCCCCTCCCTTTCCCAAGTATTTCCGTCAAATATCCATTATTTTTCCATTGCTGGTCATTTCGGAAAAACGGCGGAAAACCGTCTCTCGCTGAGGGGGCGTGGTATGTCTCTTTCCGCAAACAAACCGCCCGTATTTGCTCACACGCCGGGGCACCGACGGATCGCTCGCGCCTCGTTTCCGCGCACTTTTCGCGTCACGCGAAATGGGCGGAGCTTCGATTTTCTGTCAGAATGATGAAGAAGACTCAGTTTTCCGCGCGGAAAAAGCGAAGAGAAAAAGAAGGGGTCTGTCTCTAAAAGTTTGTTTATTTTTCGAATTTCGCTCACTGTCATCTCGTAATCTCCAATTCAATGTGTCGTGCGTAACTCCCATTTTTTGAAATCCTTTCTCATCTTTTCCTAGCTTGCTGCACTATTTCCCCCTGTATACTGTAGACATCTTCTTATTGATTGATCCGTTCCATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATGTTATATCACCCCCTTTT</pcr_primer_p1>
		<pcr_primer_p2>AGCAATGGAAAAATAATGGATA</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>GAATGTTATATCACCCCCTTTTTTATGACTTCACGAACACCTGATCACTTTTTTCCCTCCGATCAGCCATCACTCATTTAATCTTTTGATTTGCTCCTCTCACATAATTTTTTTTCTGCTCCTCCTCTCCTCTATTCGTTTTCTTCTTTCCCACAGTTTCTCATTTTCAACACTCCCCCTCCCTTTCCCAAGTATTTCCGTCAAATATCCATTATTTTTCCATTGCT</canonical_amplicon>
		<polymorphic_amplicon>GAATGTTATATCACCCCCTTTTTTATGACTTCACGAACACCTGATCACTTTTTTCCCTCCGATCAGCCATCACTCATTTAATCTTTTGATTTGCTCCTCTCACATAATTTTTTTTCTGCTCCTCCTCTCCTCTATTCGTWTTCTTCTTTCCCACAGTTTCTCATTTTCAACACTCCCCCTCCCTTTCCCAAGTATTTCCGTCAAATATCCATTATTTTTCCATTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28341</snp_id>
        <super_contig>c003500648.Contig1</super_contig>
        <contig_pos>1057452</contig_pos>
        <strand>+</strand>
        <context>CTTCTTCGTG[C/T]ATGTAGGTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATTTGAGATGTCAGCTTTTATATTTTTTGACTAACTCTTCTTCGTG</left_flank>
        <right_flank>ATGTAGGTCTGTACCTTTTTTTTAATTTCGGAAGTTCGGTACCACTTACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGCACCGACGGATCGCTCGCGCCTCGTTTCCGCGCACTTTTCGCGTCACGCGAAATGGGCGGAGCTTCGATTTTCTGTCAGAATGATGAAGAAGACTCAGTTTTCCGCGCGGAAAAAGCGAAGAGAAAAAGAAGGGGTCTGTCTCTAAAAGTTTGTTTATTTTTCGAATTTCGCTCACTGTCATCTCGTAATCTCCAATTCAATGTGTCGTGCGTAACTCCCATTTTTTGAAATCCTTTCTCATCTTTTCCTAGCTTGCTGCACTATTTCCCCCTGTATACTGTAGACATCTTCTTATTGATTGATCCGTTCCATGCTCTCGGCTATTTTTTTTTGAAATATTCAGATCAGTGTGCATCTCACCGAGGCGGATGATTTTCAAATTTGAAATCATAGCCCTATCAGTTATCTTATCCTTTAACACCTTCTCAAGAAACTATTTCATAACAAAAATTTGAGATGTCAGCTTTTATATTTTTTGACTAACTCTTCTTCGTGTATGTAGGTCTGTACCTTTTTTTTAATTTCGGAAGTTCGGTACCACTTACTTTTCTTTTATCTTTTCGTTTTTCTCCTTATTTTACACACCAGAGAAAATATTCAAAAATATTCAACTGTCATTCAAACTTACATTCCCTAATATCCCAGAACAGAATCCTCAAAGCCAGTCGTCTGATTTCGACATTGTCTGACGTAAAAGAAATATAATGTAGTGTACTTGAAGAATAATCAAAAATAGAAATACAAGTACAAATCTCTAAAAATTACTTATCTTTCTCTACCAAATCTGTATCCTTCGTGATTTCTGCTCCCTCAAATCCGCGAGAAATCGTGTTCCAATCCACCAAACCAAAAGACCACATATTTTCTAATATTTGCTCACAGTTCTCTTTTGAGTTACTCTCAAGTTTTTATACATTATCTTACAAAAACCGAAGTCAAGTTCTTCATCCCTCTATTGGCCTTTCCAATTACTCTTTCTTCTTTTTTCGAAATGAC</canonical>
            <polymorphic>GGGCACCGACGGATCGCTCGCGCCTCGTTTCCGCGCACTTTTCGCGTCACGCGAAATGGGCGGAGCTTCGATTTTCTGTCAGAATGATGAAGAAGACTCAGTTTTCCGCGCGGAAAAAGCGAAGAGAAAAAGAAGGGGTCTGTCTCTAAAAGTTTGTTTATTTTTCGAATTTCGCTCACTGTCATCTCGTAATCTCCAATTCAATGTGTCGTGCGTAACTCCCATTTTTTGAAATCCTTTCTCATCTTTTCCTAGCTTGCTGCACTATTTCCCCCTGTATACTGTAGACATCTTCTTATTGATTGATCCGTTCCATGCTCTCGGCTATTTTTTTTTGAAATATTCAGATCAGTGTGCATCTCACCGAGGCGGATGATTTTCAAATTTGAAATCATAGCCCTATCAGTTATCTTATCCTTTAACACCTTCTCAAGAAACTATTTCATAACAAAAATTTGAGATGTCAGCTTTTATATTTTTTGACTAACTCTTCTTCGTGYATGTAGGTCTGTACCTTTTTTTTAATTTCGGAAGTTCGGTACCACTTACTTTTCTTTTATCTTTTCGTTTTTCTCCTTATTTTACACACCAGAGAAAATATTCAAAAATATTCAACTGTCATTCAAACTTACATTCCCTAATATCCCAGAACAGAATCCTCAAAGCCAGTCGTCTGATTTCGACATTGTCTGACGTAAAAGAAATATAATGTAGTGTACTTGAAGAATAATCAAAAATAGAAATACAAGTACAAATCTCTAAAAATTACTTATCTTTCTCTACCAAATCTGTATCCTTCGTGATTTCTGCTCCCTCAAATCCGCGAGAAATCGTGTTCCAATCCACCAAACCAAAAGACCACATATTTTCTAATATTTGCTCACAGTTCTCTTTTGAGTTACTCTCAAGTTTTTATACATTATCTTACAAAAACCGAAGTCAAGTTCTTCATCCCTCTATTGGCCTTTCCAATTACTCTTTCTTCTTTTTTCGAAATGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAATATTCAGATCAGTGTG</pcr_primer_p1>
		<pcr_primer_p2>AAAATAAGGAGAAAAACGAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAATATTCAGATCAGTGTGCATCTCACCGAGGCGGATGATTTTCAAATTTGAAATCATAGCCCTATCAGTTATCTTATCCTTTAACACCTTCTCAAGAAACTATTTCATAACAAAAATTTGAGATGTCAGCTTTTATATTTTTTGACTAACTCTTCTTCGTGTATGTAGGTCTGTACCTTTTTTTTAATTTCGGAAGTTCGGTACCACTTACTTTTCTTTTATCTTTTCGTTTTTCTCCTTATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAATATTCAGATCAGTGTGCATCTCACCGAGGCGGATGATTTTCAAATTTGAAATCATAGCCCTATCAGTTATCTTATCCTTTAACACCTTCTCAAGAAACTATTTCATAACAAAAATTTGAGATGTCAGCTTTTATATTTTTTGACTAACTCTTCTTCGTGYATGTAGGTCTGTACCTTTTTTTTAATTTCGGAAGTTCGGTACCACTTACTTTTCTTTTATCTTTTCGTTTTTCTCCTTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28342</snp_id>
        <super_contig>c003500709.Contig1</super_contig>
        <contig_pos>14724</contig_pos>
        <strand>+</strand>
        <context>aatttaTTGW[A/T]CGATTCTATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGACCTCGTAGAAACTTGGTTTTTCGACAGGAATGTCTCAAATTTATTGA</left_flank>
        <right_flank>CGATTCTATCAATTTCCAATAGATTCAATTTTTCCGAGTTCTAAAAGCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATTCATAATCCGGATGATAACAATGAGTTAGCTGGTATGGCTGCTCGACCAGTTTGGATTGGTTTGAAATGCACAGTTTCAAGGGATCCGTCGTCTTGCCTTTGGGATGATCAAAGTGGCACGGCTCAGGGGTACAATGGGTTTTCGTCCGGTGAGTTTCATTTTGCAGGTACACGAAGGTACGGTACAAGATACAAGAAGGTACAAGAAAGGTAAAAGAAGTCTAAGGTACAAGAAGCCATTGAAATATTTTGAAGCCTTTCAAATATTCACAAAAAAAAAAAACGCAGACAATTTGTCAATGGACCTACCAAATACCATCTTCCTAAGACAATTTTGACCCGAGTTATGGCGATTTGAAGTTTTCGAGAGACGTAGAGAAACAAGAGTTTCTGACTGTCTGCGTCTCTTTATGCGAAATCTTCAAATGGCTATAACTTGGCCCAAAGACCTCGTAGAAACTTGGTTTTTCGACAGGAATGTCTCAAATTTATTGAACGATTCTATCAATTTCCAATAGATTCAATTTTTCCGAGTTCTAAAAGCAATTTATTTGAAACAATAAGTATTCCGAATCTATACAAAGAGTTCGATGAAACTTAGTTTCTGTATTTCTTTGCATACAAAATTATAGTTTCTCGATAGTTTTGAACCAAAGTTTTTTTGGTTTTATTAGAAACGACACAAATTTCCTGCTAAACCCACCAGAAACCATCTTTTTACGACAATTTTAAGCCGAGTTATAACGATTTTAAGTTTTTGAGAGACGCAAAGAAACGGGAGTCTCTCACTGCCTGCGTCTCTTCATGTGAAGTCTACAAATGAACATAACTCGCCTCAACGACGTCGTAAAAACTTGATTCTTGATGATACCGTGTTATGGCCATTTCAAGATTTTGAATGAAGAGACGCAGACAGTCAGTCACTCTCGTTTCTCTGCGCCTCTCAAAAATTTCAAATCGCTATAACTCGGCTCAAGATTGTCGTAGAAAGATGGT</canonical>
            <polymorphic>CGATTCATAATCCGGATGATAACAATGAGTTAGCTGGTATGGCTGCTCGACCAGTTTGGATTGGTTTGAAATGCACAGTTTCAAGGGATCCGTCGTCTTGCCTTTGGGATGATCAAAGTGGCACGGCTCAGGGGTACAATGGGTTTTCGTCCGGTGAGTTTCATTTTGCAGGTACACGAAGGTACGGTACAAGATACAAGAAGGTACAAGAAAGGTAAAAGAAGTCTAAGGTACAAGAAGCCATTGAAATATTTTGAAGCCTTTCAAATATTCACAAAAAAAAAAAACGCAGACAATTTGTCAATGGACCTACCAAATACCATCTTCCTAAGACAATTTTGACCCGAGTTATGGCGATTTGAAGTTTTCGAGAGACGTAGAGAAACAAGAGTTTCTGACTGTCTGCGTCTCTTTATGCGAAATCTTCAAATGGCTATAACTTGGCCCAAAGACCTCGTAGAAACTTGGTTTTTCGACAGGAATGTCTCAAATTTATTGAWCGATTCTATCAATTTCCAATAGATTCAATTTTTCCGAGTTCTAAAAGCAATTTATTTGAAACAATAAGTATTCCGAATCTATACAAAGAGTTCGATGAAACTTAGTTTCTGTATTTCTTTGCATACAAAATTATAGTTTCTCGATAGTTTTGAACCAAAGTTTTTTTGGTTTTATTAGAAACGACACAAATTTCCTGCTAAACCCACCAGAAACCATCTTTTTACGACAATTTTAAGCCGAGTTATAACGATTTTAAGTTTTTGAGAGACGCAAAGAAACGGGAGTCTCTCACTGCCTGCGTCTCTTCATGTGAAGTCTACAAATGAACATAACTCGCCTCAACGACGTCGTAAAAACTTGATTCTTGATGATACCGTGTTATGGCCATTTCAAGATTTTGAATGAAGAGACGCAGACAGTCAGTCACTCTCGTTTCTCTGCGCCTCTCAAAAATTTCAAATCGCTATAACTCGGCTCAAGATTGTCGTAGAAAGATGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCAATGGACCTACCAAATA</pcr_primer_p1>
		<pcr_primer_p2>CTAAGTTTCATCGAACTCTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>TGTCAATGGACCTACCAAATACCATCTTCCTAAGACAATTTTGACCCGAGTTATGGCGATTTGAAGTTTTCGAGAGACGTAGAGAAACAAGAGTTTCTGACTGTCTGCGTCTCTTTATGCGAAATCTTCAAATGGCTATAACTTGGCCCAAAGACCTCGTAGAAACTTGGTTTTTCGACAGGAATGTCTCAAATTTATTGAACGATTCTATCAATTTCCAATAGATTCAATTTTTCCGAGTTCTAAAAGCAATTTATTTGAAACAATAAGTATTCCGAATCTATACAAAGAGTTCGATGAAACTTAG</canonical_amplicon>
		<polymorphic_amplicon>TGTCAATGGACCTACCAAATACCATCTTCCTAAGACAATTTTGACCCGAGTTATGGCGATTTGAAGTTTTCGAGAGACGTAGAGAAACAAGAGTTTCTGACTGTCTGCGTCTCTTTATGCGAAATCTTCAAATGGCTATAACTTGGCCCAAAGACCTCGTAGAAACTTGGTTTTTCGACAGGAATGTCTCAAATTTATTGAWCGATTCTATCAATTTCCAATAGATTCAATTTTTCCGAGTTCTAAAAGCAATTTATTTGAAACAATAAGTATTCCGAATCTATACAAAGAGTTCGATGAAACTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28343</snp_id>
        <super_contig>c003500709.Contig1</super_contig>
        <contig_pos>14974</contig_pos>
        <strand></strand>
        <context>gagttataac[G/A]atttkaagtt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAACCCACCAGAAACCATCTTTTTACGACAATTTTAAGCCGAGTTATAAC</left_flank>
        <right_flank>ATTTTAAGTTTTTGAGAGACGCAAAGAAACGGGAGTCTCTCACTGCCTGC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTGAAGCCTTTCAAATATTCACAAAAAAAAAAAACGCAGACAATTTGTCAATGGACCTACCAAATACCATCTTCCTAAGACAATTTTGACCCGAGTTATGGCGATTTGAAGTTTTCGAGAGACGTAGAGAAACAAGAGTTTCTGACTGTCTGCGTCTCTTTATGCGAAATCTTCAAATGGCTATAACTTGGCCCAAAGACCTCGTAGAAACTTGGTTTTTCGACAGGAATGTCTCAAATTTATTGAACGATTCTATCAATTTCCAATAGATTCAATTTTTCCGAGTTCTAAAAGCAATTTATTTGAAACAATAAGTATTCCGAATCTATACAAAGAGTTCGATGAAACTTAGTTTCTGTATTTCTTTGCATACAAAATTATAGTTTCTCGATAGTTTTGAACCAAAGTTTTTTTGGTTTTATTAGAAACGACACAAATTTCCTGCTAAACCCACCAGAAACCATCTTTTTACGACAATTTTAAGCCGAGTTATAACGATTTTAAGTTTTTGAGAGACGCAAAGAAACGGGAGTCTCTCACTGCCTGCGTCTCTTCATGTGAAGTCTACAAATGAACATAACTCGCCTCAACGACGTCGTAAAAACTTGATTCTTGATGATACCGTGTTATGGCCATTTCAAGATTTTGAATGAAGAGACGCAGACAGTCAGTCACTCTCGTTTCTCTGCGCCTCTCAAAAATTTCAAATCGCTATAACTCGGCTCAAGATTGTCGTAGAAAGATGGTCCTAGAACGGAAATGTGCAGAATTGAAGAATTGAAAAGCCAATTTTTCCATTTTTAAAAGTATTATATTTGAAACAGTTATTTTAATTATTGCTTCAAAAAAATTTGAGTAGTGGATTGTTTTATATTCGCAAGAAAACGCCAAAAATTCGCCACTAAACAAACCAAAAATCATCTTTCTACGACAATTTTAAATCGAGTTATAACGATTTGAAATATTTTTGAGAGACGCAGAGAAACGAGGGTGTCTG</canonical>
            <polymorphic>ATTTTGAAGCCTTTCAAATATTCACAAAAAAAAAAAACGCAGACAATTTGTCAATGGACCTACCAAATACCATCTTCCTAAGACAATTTTGACCCGAGTTATGGCGATTTGAAGTTTTCGAGAGACGTAGAGAAACAAGAGTTTCTGACTGTCTGCGTCTCTTTATGCGAAATCTTCAAATGGCTATAACTTGGCCCAAAGACCTCGTAGAAACTTGGTTTTTCGACAGGAATGTCTCAAATTTATTGAACGATTCTATCAATTTCCAATAGATTCAATTTTTCCGAGTTCTAAAAGCAATTTATTTGAAACAATAAGTATTCCGAATCTATACAAAGAGTTCGATGAAACTTAGTTTCTGTATTTCTTTGCATACAAAATTATAGTTTCTCGATAGTTTTGAACCAAAGTTTTTTTGGTTTTATTAGAAACGACACAAATTTCCTGCTAAACCCACCAGAAACCATCTTTTTACGACAATTTTAAGCCGAGTTATAACRATTTTAAGTTTTTGAGAGACGCAAAGAAACGGGAGTCTCTCACTGCCTGCGTCTCTTCATGTGAAGTCTACAAATGAACATAACTCGCCTCAACGACGTCGTAAAAACTTGATTCTTGATGATACCGTGTTATGGCCATTTCAAGATTTTGAATGAAGAGACGCAGACAGTCAGTCACTCTCGTTTCTCTGCGCCTCTCAAAAATTTCAAATCGCTATAACTCGGCTCAAGATTGTCGTAGAAAGATGGTCCTAGAACGGAAATGTGCAGAATTGAAGAATTGAAAAGCCAATTTTTCCATTTTTAAAAGTATTATATTTGAAACAGTTATTTTAATTATTGCTTCAAAAAAATTTGAGTAGTGGATTGTTTTATATTCGCAAGAAAACGCCAAAAATTCGCCACTAAACAAACCAAAAATCATCTTTCTACGACAATTTTAAATCGAGTTATAACGATTTGAAATATTTTTGAGAGACGCAGAGAAACGAGGGTGTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGATAGTTTTGAACCAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>AAATTGGCTTTTCAATTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>405</pcr_amplicon_size>
		<canonical_amplicon>TCGATAGTTTTGAACCAAAGTTTTTTTGGTTTTATTAGAAACGACACAAATTTCCTGCTAAACCCACCAGAAACCATCTTTTTACGACAATTTTAAGCCGAGTTATAACGATTTTAAGTTTTTGAGAGACGCAAAGAAACGGGAGTCTCTCACTGCCTGCGTCTCTTCATGTGAAGTCTACAAATGAACATAACTCGCCTCAACGACGTCGTAAAAACTTGATTCTTGATGATACCGTGTTATGGCCATTTCAAGATTTTGAATGAAGAGACGCAGACAGTCAGTCACTCTCGTTTCTCTGCGCCTCTCAAAAATTTCAAATCGCTATAACTCGGCTCAAGATTGTCGTAGAAAGATGGTCCTAGAACGGAAATGTGCAGAATTGAAGAATTGAAAAGCCAATTT</canonical_amplicon>
		<polymorphic_amplicon>TCGATAGTTTTGAACCAAAGTTTTTTTGGTTTTATTAGAAACGACACAAATTTCCTGCTAAACCCACCAGAAACCATCTTTTTACGACAATTTTAAGCCGAGTTATAACRATTTTAAGTTTTTGAGAGACGCAAAGAAACGGGAGTCTCTCACTGCCTGCGTCTCTTCATGTGAAGTCTACAAATGAACATAACTCGCCTCAACGACGTCGTAAAAACTTGATTCTTGATGATACCGTGTTATGGCCATTTCAAGATTTTGAATGAAGAGACGCAGACAGTCAGTCACTCTCGTTTCTCTGCGCCTCTCAAAAATTTCAAATCGCTATAACTCGGCTCAAGATTGTCGTAGAAAGATGGTCCTAGAACGGAAATGTGCAGAATTGAAGAATTGAAAAGCCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28344</snp_id>
        <super_contig>c003500709.Contig1</super_contig>
        <contig_pos>14979</contig_pos>
        <strand></strand>
        <context>ataacrattt[T/G]aagtttttga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CACCAGAAACCATCTTTTTACGACAATTTTAAGCCGAGTTATAACGATTT</left_flank>
        <right_flank>AAGTTTTTGAGAGACGCAAAGAAACGGGAGTCTCTCACTGCCTGCGTCTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGCCTTTCAAATATTCACAAAAAAAAAAAACGCAGACAATTTGTCAATGGACCTACCAAATACCATCTTCCTAAGACAATTTTGACCCGAGTTATGGCGATTTGAAGTTTTCGAGAGACGTAGAGAAACAAGAGTTTCTGACTGTCTGCGTCTCTTTATGCGAAATCTTCAAATGGCTATAACTTGGCCCAAAGACCTCGTAGAAACTTGGTTTTTCGACAGGAATGTCTCAAATTTATTGAACGATTCTATCAATTTCCAATAGATTCAATTTTTCCGAGTTCTAAAAGCAATTTATTTGAAACAATAAGTATTCCGAATCTATACAAAGAGTTCGATGAAACTTAGTTTCTGTATTTCTTTGCATACAAAATTATAGTTTCTCGATAGTTTTGAACCAAAGTTTTTTTGGTTTTATTAGAAACGACACAAATTTCCTGCTAAACCCACCAGAAACCATCTTTTTACGACAATTTTAAGCCGAGTTATAACGATTTTAAGTTTTTGAGAGACGCAAAGAAACGGGAGTCTCTCACTGCCTGCGTCTCTTCATGTGAAGTCTACAAATGAACATAACTCGCCTCAACGACGTCGTAAAAACTTGATTCTTGATGATACCGTGTTATGGCCATTTCAAGATTTTGAATGAAGAGACGCAGACAGTCAGTCACTCTCGTTTCTCTGCGCCTCTCAAAAATTTCAAATCGCTATAACTCGGCTCAAGATTGTCGTAGAAAGATGGTCCTAGAACGGAAATGTGCAGAATTGAAGAATTGAAAAGCCAATTTTTCCATTTTTAAAAGTATTATATTTGAAACAGTTATTTTAATTATTGCTTCAAAAAAATTTGAGTAGTGGATTGTTTTATATTCGCAAGAAAACGCCAAAAATTCGCCACTAAACAAACCAAAAATCATCTTTCTACGACAATTTTAAATCGAGTTATAACGATTTGAAATATTTTTGAGAGACGCAGAGAAACGAGGGTGTCTGGCTGT</canonical>
            <polymorphic>GAAGCCTTTCAAATATTCACAAAAAAAAAAAACGCAGACAATTTGTCAATGGACCTACCAAATACCATCTTCCTAAGACAATTTTGACCCGAGTTATGGCGATTTGAAGTTTTCGAGAGACGTAGAGAAACAAGAGTTTCTGACTGTCTGCGTCTCTTTATGCGAAATCTTCAAATGGCTATAACTTGGCCCAAAGACCTCGTAGAAACTTGGTTTTTCGACAGGAATGTCTCAAATTTATTGAACGATTCTATCAATTTCCAATAGATTCAATTTTTCCGAGTTCTAAAAGCAATTTATTTGAAACAATAAGTATTCCGAATCTATACAAAGAGTTCGATGAAACTTAGTTTCTGTATTTCTTTGCATACAAAATTATAGTTTCTCGATAGTTTTGAACCAAAGTTTTTTTGGTTTTATTAGAAACGACACAAATTTCCTGCTAAACCCACCAGAAACCATCTTTTTACGACAATTTTAAGCCGAGTTATAACGATTTKAAGTTTTTGAGAGACGCAAAGAAACGGGAGTCTCTCACTGCCTGCGTCTCTTCATGTGAAGTCTACAAATGAACATAACTCGCCTCAACGACGTCGTAAAAACTTGATTCTTGATGATACCGTGTTATGGCCATTTCAAGATTTTGAATGAAGAGACGCAGACAGTCAGTCACTCTCGTTTCTCTGCGCCTCTCAAAAATTTCAAATCGCTATAACTCGGCTCAAGATTGTCGTAGAAAGATGGTCCTAGAACGGAAATGTGCAGAATTGAAGAATTGAAAAGCCAATTTTTCCATTTTTAAAAGTATTATATTTGAAACAGTTATTTTAATTATTGCTTCAAAAAAATTTGAGTAGTGGATTGTTTTATATTCGCAAGAAAACGCCAAAAATTCGCCACTAAACAAACCAAAAATCATCTTTCTACGACAATTTTAAATCGAGTTATAACGATTTGAAATATTTTTGAGAGACGCAGAGAAACGAGGGTGTCTGGCTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>478 300 107 65 29 21</canonical_bands>
                <polymorphic_bands>478 321 107 65 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGATAGTTTTGAACCAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>AAATTGGCTTTTCAATTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>405</pcr_amplicon_size>
		<canonical_amplicon>TCGATAGTTTTGAACCAAAGTTTTTTTGGTTTTATTAGAAACGACACAAATTTCCTGCTAAACCCACCAGAAACCATCTTTTTACGACAATTTTAAGCCGAGTTATAACGATTTTAAGTTTTTGAGAGACGCAAAGAAACGGGAGTCTCTCACTGCCTGCGTCTCTTCATGTGAAGTCTACAAATGAACATAACTCGCCTCAACGACGTCGTAAAAACTTGATTCTTGATGATACCGTGTTATGGCCATTTCAAGATTTTGAATGAAGAGACGCAGACAGTCAGTCACTCTCGTTTCTCTGCGCCTCTCAAAAATTTCAAATCGCTATAACTCGGCTCAAGATTGTCGTAGAAAGATGGTCCTAGAACGGAAATGTGCAGAATTGAAGAATTGAAAAGCCAATTT</canonical_amplicon>
		<polymorphic_amplicon>TCGATAGTTTTGAACCAAAGTTTTTTTGGTTTTATTAGAAACGACACAAATTTCCTGCTAAACCCACCAGAAACCATCTTTTTACGACAATTTTAAGCCGAGTTATAACGATTTKAAGTTTTTGAGAGACGCAAAGAAACGGGAGTCTCTCACTGCCTGCGTCTCTTCATGTGAAGTCTACAAATGAACATAACTCGCCTCAACGACGTCGTAAAAACTTGATTCTTGATGATACCGTGTTATGGCCATTTCAAGATTTTGAATGAAGAGACGCAGACAGTCAGTCACTCTCGTTTCTCTGCGCCTCTCAAAAATTTCAAATCGCTATAACTCGGCTCAAGATTGTCGTAGAAAGATGGTCCTAGAACGGAAATGTGCAGAATTGAAGAATTGAAAAGCCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28345</snp_id>
        <super_contig>c003500709.Contig1</super_contig>
        <contig_pos>15084</contig_pos>
        <strand></strand>
        <context>cgtaaaaact[T/C]gattcttGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGTGAAGTCTACAAATGAACATAACTCGCCTCAACGACGTCGTAAAAACT</left_flank>
        <right_flank>GATTCTTGATGATACCGTGTTATGGCCATTTCAAGATTTTGAATGAAGAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGTTTTCGAGAGACGTAGAGAAACAAGAGTTTCTGACTGTCTGCGTCTCTTTATGCGAAATCTTCAAATGGCTATAACTTGGCCCAAAGACCTCGTAGAAACTTGGTTTTTCGACAGGAATGTCTCAAATTTATTGAACGATTCTATCAATTTCCAATAGATTCAATTTTTCCGAGTTCTAAAAGCAATTTATTTGAAACAATAAGTATTCCGAATCTATACAAAGAGTTCGATGAAACTTAGTTTCTGTATTTCTTTGCATACAAAATTATAGTTTCTCGATAGTTTTGAACCAAAGTTTTTTTGGTTTTATTAGAAACGACACAAATTTCCTGCTAAACCCACCAGAAACCATCTTTTTACGACAATTTTAAGCCGAGTTATAACGATTTTAAGTTTTTGAGAGACGCAAAGAAACGGGAGTCTCTCACTGCCTGCGTCTCTTCATGTGAAGTCTACAAATGAACATAACTCGCCTCAACGACGTCGTAAAAACTTGATTCTTGATGATACCGTGTTATGGCCATTTCAAGATTTTGAATGAAGAGACGCAGACAGTCAGTCACTCTCGTTTCTCTGCGCCTCTCAAAAATTTCAAATCGCTATAACTCGGCTCAAGATTGTCGTAGAAAGATGGTCCTAGAACGGAAATGTGCAGAATTGAAGAATTGAAAAGCCAATTTTTCCATTTTTAAAAGTATTATATTTGAAACAGTTATTTTAATTATTGCTTCAAAAAAATTTGAGTAGTGGATTGTTTTATATTCGCAAGAAAACGCCAAAAATTCGCCACTAAACAAACCAAAAATCATCTTTCTACGACAATTTTAAATCGAGTTATAACGATTTGAAATATTTTTGAGAGACGCAGAGAAACGAGGGTGTCTGGCTGTCTGCGTCTCTTCATGTGAAATCTTAAAATGGACATAACTCGACTCAACGACGTAGTAGCGAGTTGGTTCTTGAACGTAATTCTTGAACATGTTTTGAGGATTTTA</canonical>
            <polymorphic>GAAGTTTTCGAGAGACGTAGAGAAACAAGAGTTTCTGACTGTCTGCGTCTCTTTATGCGAAATCTTCAAATGGCTATAACTTGGCCCAAAGACCTCGTAGAAACTTGGTTTTTCGACAGGAATGTCTCAAATTTATTGAACGATTCTATCAATTTCCAATAGATTCAATTTTTCCGAGTTCTAAAAGCAATTTATTTGAAACAATAAGTATTCCGAATCTATACAAAGAGTTCGATGAAACTTAGTTTCTGTATTTCTTTGCATACAAAATTATAGTTTCTCGATAGTTTTGAACCAAAGTTTTTTTGGTTTTATTAGAAACGACACAAATTTCCTGCTAAACCCACCAGAAACCATCTTTTTACGACAATTTTAAGCCGAGTTATAACGATTTTAAGTTTTTGAGAGACGCAAAGAAACGGGAGTCTCTCACTGCCTGCGTCTCTTCATGTGAAGTCTACAAATGAACATAACTCGCCTCAACGACGTCGTAAAAACTYGATTCTTGATGATACCGTGTTATGGCCATTTCAAGATTTTGAATGAAGAGACGCAGACAGTCAGTCACTCTCGTTTCTCTGCGCCTCTCAAAAATTTCAAATCGCTATAACTCGGCTCAAGATTGTCGTAGAAAGATGGTCCTAGAACGGAAATGTGCAGAATTGAAGAATTGAAAAGCCAATTTTTCCATTTTTAAAAGTATTATATTTGAAACAGTTATTTTAATTATTGCTTCAAAAAAATTTGAGTAGTGGATTGTTTTATATTCGCAAGAAAACGCCAAAAATTCGCCACTAAACAAACCAAAAATCATCTTTCTACGACAATTTTAAATCGAGTTATAACGATTTGAAATATTTTTGAGAGACGCAGAGAAACGAGGGTGTCTGGCTGTCTGCGTCTCTTCATGTGAAATCTTAAAATGGACATAACTCGACTCAACGACGTAGTAGCGAGTTGGTTCTTGAACGTAATTCTTGAACATGTTTTGAGGATTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGATAGTTTTGAACCAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>AAATTGGCTTTTCAATTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>405</pcr_amplicon_size>
		<canonical_amplicon>TCGATAGTTTTGAACCAAAGTTTTTTTGGTTTTATTAGAAACGACACAAATTTCCTGCTAAACCCACCAGAAACCATCTTTTTACGACAATTTTAAGCCGAGTTATAACGATTTTAAGTTTTTGAGAGACGCAAAGAAACGGGAGTCTCTCACTGCCTGCGTCTCTTCATGTGAAGTCTACAAATGAACATAACTCGCCTCAACGACGTCGTAAAAACTTGATTCTTGATGATACCGTGTTATGGCCATTTCAAGATTTTGAATGAAGAGACGCAGACAGTCAGTCACTCTCGTTTCTCTGCGCCTCTCAAAAATTTCAAATCGCTATAACTCGGCTCAAGATTGTCGTAGAAAGATGGTCCTAGAACGGAAATGTGCAGAATTGAAGAATTGAAAAGCCAATTT</canonical_amplicon>
		<polymorphic_amplicon>TCGATAGTTTTGAACCAAAGTTTTTTTGGTTTTATTAGAAACGACACAAATTTCCTGCTAAACCCACCAGAAACCATCTTTTTACGACAATTTTAAGCCGAGTTATAACGATTTTAAGTTTTTGAGAGACGCAAAGAAACGGGAGTCTCTCACTGCCTGCGTCTCTTCATGTGAAGTCTACAAATGAACATAACTCGCCTCAACGACGTCGTAAAAACTYGATTCTTGATGATACCGTGTTATGGCCATTTCAAGATTTTGAATGAAGAGACGCAGACAGTCAGTCACTCTCGTTTCTCTGCGCCTCTCAAAAATTTCAAATCGCTATAACTCGGCTCAAGATTGTCGTAGAAAGATGGTCCTAGAACGGAAATGTGCAGAATTGAAGAATTGAAAAGCCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28346</snp_id>
        <super_contig>c003500709.Contig1</super_contig>
        <contig_pos>16677</contig_pos>
        <strand></strand>
        <context>gtcgtagaaa[A/G]atgatttttg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCTCACTAAATCCAAATCCCTATAACTCGGCTCAAAACTGTCGTAGAAA</left_flank>
        <right_flank>ATGATTTTTGTTGTGTTTAGCGGCAAATTTCAAGCGTTTTCTTATGAATA</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCACTACGGGATAGAGTCCTCTATGATGCTGGCCAATGGACAAATAGTAATTGTTCGAAACCAGCCCCATTTGTATGTAAACGAGATGCTCAAGTGTCGTGTGGAGGTACGGATGAACCAGTGACAACGGCACCACCGGAATGTGGTAGTGGAATTATGCAAGAAGATAATAATGGAACTGTAAGTGTCAAATTATGTGAAACTCTATATATTCAAAAGAAAACGCCTGAATTTGCTTCTGAATCCACTAAAACTCATCTTTCCATGACAATTTTGAGCCGAGTTATAGCGATTTGAAATTTTTGAGAGGCGCAGAGAAACGAGAGTGACTGACTGTCTGCGTCTCTTCATGCCAAATCTTCAAATGTCTATAACTCGGCTCAAAAAAGTCGTAGAAACTTGTTTCTTAAACGNNNNNNNNNNGTCAGACACTCTCGTTTCTCTGCGTCTCTCACTAAATCCAAATCCCTATAACTCGGCTCAAAACTGTCGTAGAAAAATGATTTTTGTTGTGTTTAGCGGCAAATTTCAAGCGTTTTCTTATGAATATCTGAATATCTGAAACCTCTTAATTTTCAGAATTTTTTTTTAGTTCTACTCTCCAAACTTCCCAAACTCTTACGTTGGCGCCAAAAACCCTTGCAAATACTTCATTGACACTCCAAGCGGAACCCAAGCCCAGATTCGATTCCCAATTTTGAATCTCGATGCCTATTCGACAATTCAGTTGTATTATGGGGACAACCAAAAGCCAGACGTGACAATTTACTCCGATACTACTATGAAATGGTACACTTCTCCAACAAACACTATTAAAATGATCTTCAAACCGAGTACTGACTACACTGGCTCTAGAATCTTATCCTGGAAAGCTGAATTTGAGCCCATGCCACAGGTTACTGTACCTCGCACTACAACTACAACTCATAAAGTGATCATAACACCCGATCCAAGAAACCCATCAGGTTGTAATTCTCCTTCAATTTCAACCGAAACTGG</canonical>
            <polymorphic>GGCACTACGGGATAGAGTCCTCTATGATGCTGGCCAATGGACAAATAGTAATTGTTCGAAACCAGCCCCATTTGTATGTAAACGAGATGCTCAAGTGTCGTGTGGAGGTACGGATGAACCAGTGACAACGGCACCACCGGAATGTGGTAGTGGAATTATGCAAGAAGATAATAATGGAACTGTAAGTGTCAAATTATGTGAAACTCTATATATTCAAAAGAAAACGCCTGAATTTGCTTCTGAATCCACTAAAACTCATCTTTCCATGACAATTTTGAGCCGAGTTATAGCGATTTGAAATTTTTGAGAGGCGCAGAGAAACGAGAGTGACTGACTGTCTGCGTCTCTTCATGCCAAATCTTCAAATGTCTATAACTCGGCTCAAAAAAGTCGTAGAAACTTGTTTCTTAAACGNNNNNNNNNNGTCAGACACTCTCGTTTCTCTGCGTCTCTCACTAAATCCAAATCCCTATAACTCGGCTCAAAACTGTCGTAGAAARATGATTTTTGTTGTGTTTAGCGGCAAATTTCAAGCGTTTTCTTATGAATATCTGAATATCTGAAACCTCTTAATTTTCAGAATTTTTTTTTAGTTCTACTCTCCAAACTTCCCAAACTCTTACGTTGGCGCCAAAAACCCTTGCAAATACTTCATTGACACTCCAAGCGGAACCCAAGCCCAGATTCGATTCCCAATTTTGAATCTCGATGCCTATTCGACAATTCAGTTGTATTATGGGGACAACCAAAAGCCAGACGTGACAATTTACTCCGATACTACTATGAAATGGTACACTTCTCCAACAAACACTATTAAAATGATCTTCAAACCGAGTACTGACTACACTGGCTCTAGAATCTTATCCTGGAAAGCTGAATTTGAGCCCATGCCACAGGTTACTGTACCTCGCACTACAACTACAACTCATAAAGTGATCATAACACCCGATCCAAGAAACCCATCAGGTTGTAATTCTCCTTCAATTTCAACCGAAACTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGGAACTGTAAGTGTCAAATTA</pcr_primer_p1>
		<pcr_primer_p2>GGTTTCAGATATTCAGATATTCATAA</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>AATGGAACTGTAAGTGTCAAATTATGTGAAACTCTATATATTCAAAAGAAAACGCCTGAATTTGCTTCTGAATCCACTAAAACTCATCTTTCCATGACAATTTTGAGCCGAGTTATAGCGATTTGAAATTTTTGAGAGGCGCAGAGAAACGAGAGTGACTGACTGTCTGCGTCTCTTCATGCCAAATCTTCAAATGTCTATAACTCGGCTCAAAAAAGTCGTAGAAACTTGTTTCTTAAACGNNNNNNNNNNGTCAGACACTCTCGTTTCTCTGCGTCTCTCACTAAATCCAAATCCCTATAACTCGGCTCAAAACTGTCGTAGAAAAATGATTTTTGTTGTGTTTAGCGGCAAATTTCAAGCGTTTTCTTATGAATATCTGAATATCTGAAACC</canonical_amplicon>
		<polymorphic_amplicon>AATGGAACTGTAAGTGTCAAATTATGTGAAACTCTATATATTCAAAAGAAAACGCCTGAATTTGCTTCTGAATCCACTAAAACTCATCTTTCCATGACAATTTTGAGCCGAGTTATAGCGATTTGAAATTTTTGAGAGGCGCAGAGAAACGAGAGTGACTGACTGTCTGCGTCTCTTCATGCCAAATCTTCAAATGTCTATAACTCGGCTCAAAAAAGTCGTAGAAACTTGTTTCTTAAACGNNNNNNNNNNGTCAGACACTCTCGTTTCTCTGCGTCTCTCACTAAATCCAAATCCCTATAACTCGGCTCAAAACTGTCGTAGAAARATGATTTTTGTTGTGTTTAGCGGCAAATTTCAAGCGTTTTCTTATGAATATCTGAATATCTGAAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28347</snp_id>
        <super_contig>c003500709.Contig1</super_contig>
        <contig_pos>16762</contig_pos>
        <strand>+</strand>
        <context>TTTCAGAATT[C/T]TTTTTTAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTTTTCTTATGAATATCTGAATATCTGAAACCTCTTAATTTTCAGAATT</left_flank>
        <right_flank>TTTTTTAGTTCTACTCTCCAAACTTCCCAAACTCTTACGTTGGCGCCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGCTCAAGTGTCGTGTGGAGGTACGGATGAACCAGTGACAACGGCACCACCGGAATGTGGTAGTGGAATTATGCAAGAAGATAATAATGGAACTGTAAGTGTCAAATTATGTGAAACTCTATATATTCAAAAGAAAACGCCTGAATTTGCTTCTGAATCCACTAAAACTCATCTTTCCATGACAATTTTGAGCCGAGTTATAGCGATTTGAAATTTTTGAGAGGCGCAGAGAAACGAGAGTGACTGACTGTCTGCGTCTCTTCATGCCAAATCTTCAAATGTCTATAACTCGGCTCAAAAAAGTCGTAGAAACTTGTTTCTTAAACGNNNNNNNNNNGTCAGACACTCTCGTTTCTCTGCGTCTCTCACTAAATCCAAATCCCTATAACTCGGCTCAAAACTGTCGTAGAAAAATGATTTTTGTTGTGTTTAGCGGCAAATTTCAAGCGTTTTCTTATGAATATCTGAATATCTGAAACCTCTTAATTTTCAGAATTTTTTTTTAGTTCTACTCTCCAAACTTCCCAAACTCTTACGTTGGCGCCAAAAACCCTTGCAAATACTTCATTGACACTCCAAGCGGAACCCAAGCCCAGATTCGATTCCCAATTTTGAATCTCGATGCCTATTCGACAATTCAGTTGTATTATGGGGACAACCAAAAGCCAGACGTGACAATTTACTCCGATACTACTATGAAATGGTACACTTCTCCAACAAACACTATTAAAATGATCTTCAAACCGAGTACTGACTACACTGGCTCTAGAATCTTATCCTGGAAAGCTGAATTTGAGCCCATGCCACAGGTTACTGTACCTCGCACTACAACTACAACTCATAAAGTGATCATAACACCCGATCCAAGAAACCCATCAGGTTGTAATTCTCCTTCAATTTCAACCGAAACTGGCTATTTCACATCTCCAAATTACCCTGACCATTATCTCGATTCCATGACTTGTAAGTATTTGTTAACCACGGACACTGATAAAAGG</canonical>
            <polymorphic>GATGCTCAAGTGTCGTGTGGAGGTACGGATGAACCAGTGACAACGGCACCACCGGAATGTGGTAGTGGAATTATGCAAGAAGATAATAATGGAACTGTAAGTGTCAAATTATGTGAAACTCTATATATTCAAAAGAAAACGCCTGAATTTGCTTCTGAATCCACTAAAACTCATCTTTCCATGACAATTTTGAGCCGAGTTATAGCGATTTGAAATTTTTGAGAGGCGCAGAGAAACGAGAGTGACTGACTGTCTGCGTCTCTTCATGCCAAATCTTCAAATGTCTATAACTCGGCTCAAAAAAGTCGTAGAAACTTGTTTCTTAAACGNNNNNNNNNNGTCAGACACTCTCGTTTCTCTGCGTCTCTCACTAAATCCAAATCCCTATAACTCGGCTCAAAACTGTCGTAGAAAAATGATTTTTGTTGTGTTTAGCGGCAAATTTCAAGCGTTTTCTTATGAATATCTGAATATCTGAAACCTCTTAATTTTCAGAATTYTTTTTTAGTTCTACTCTCCAAACTTCCCAAACTCTTACGTTGGCGCCAAAAACCCTTGCAAATACTTCATTGACACTCCAAGCGGAACCCAAGCCCAGATTCGATTCCCAATTTTGAATCTCGATGCCTATTCGACAATTCAGTTGTATTATGGGGACAACCAAAAGCCAGACGTGACAATTTACTCCGATACTACTATGAAATGGTACACTTCTCCAACAAACACTATTAAAATGATCTTCAAACCGAGTACTGACTACACTGGCTCTAGAATCTTATCCTGGAAAGCTGAATTTGAGCCCATGCCACAGGTTACTGTACCTCGCACTACAACTACAACTCATAAAGTGATCATAACACCCGATCCAAGAAACCCATCAGGTTGTAATTCTCCTTCAATTTCAACCGAAACTGGCTATTTCACATCTCCAAATTACCCTGACCATTATCTCGATTCCATGACTTGTAAGTATTTGTTAACCACGGACACTGATAAAAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>296 227 209 145 68 55</canonical_bands>
                <polymorphic_bands>351 227 209 145 68</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGGAACTGTAAGTGTCAAATTA</pcr_primer_p1>
		<pcr_primer_p2>GAAGTATTTGCAAGGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>481</pcr_amplicon_size>
		<canonical_amplicon>AATGGAACTGTAAGTGTCAAATTATGTGAAACTCTATATATTCAAAAGAAAACGCCTGAATTTGCTTCTGAATCCACTAAAACTCATCTTTCCATGACAATTTTGAGCCGAGTTATAGCGATTTGAAATTTTTGAGAGGCGCAGAGAAACGAGAGTGACTGACTGTCTGCGTCTCTTCATGCCAAATCTTCAAATGTCTATAACTCGGCTCAAAAAAGTCGTAGAAACTTGTTTCTTAAACGNNNNNNNNNNGTCAGACACTCTCGTTTCTCTGCGTCTCTCACTAAATCCAAATCCCTATAACTCGGCTCAAAACTGTCGTAGAAAAATGATTTTTGTTGTGTTTAGCGGCAAATTTCAAGCGTTTTCTTATGAATATCTGAATATCTGAAACCTCTTAATTTTCAGAATTTTTTTTTAGTTCTACTCTCCAAACTTCCCAAACTCTTACGTTGGCGCCAAAAACCCTTGCAAATACTTC</canonical_amplicon>
		<polymorphic_amplicon>AATGGAACTGTAAGTGTCAAATTATGTGAAACTCTATATATTCAAAAGAAAACGCCTGAATTTGCTTCTGAATCCACTAAAACTCATCTTTCCATGACAATTTTGAGCCGAGTTATAGCGATTTGAAATTTTTGAGAGGCGCAGAGAAACGAGAGTGACTGACTGTCTGCGTCTCTTCATGCCAAATCTTCAAATGTCTATAACTCGGCTCAAAAAAGTCGTAGAAACTTGTTTCTTAAACGNNNNNNNNNNGTCAGACACTCTCGTTTCTCTGCGTCTCTCACTAAATCCAAATCCCTATAACTCGGCTCAAAACTGTCGTAGAAAAATGATTTTTGTTGTGTTTAGCGGCAAATTTCAAGCGTTTTCTTATGAATATCTGAATATCTGAAACCTCTTAATTTTCAGAATTYTTTTTTAGTTCTACTCTCCAAACTTCCCAAACTCTTACGTTGGCGCCAAAAACCCTTGCAAATACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28348</snp_id>
        <super_contig>c003601247.Contig1</super_contig>
        <contig_pos>20496</contig_pos>
        <strand>+</strand>
        <context>AATCCAAATT[A/T]CCTGTATATC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATT</left_flank>
        <right_flank>CCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTAAAAATTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAATTTCTTCATTGCAACGAATAATTGTTATATTTCCAGAATTTTTCTACTAAAGCTATTCCGGTATTATTACCGATATTTCGAACGTTTATCTGATGAATCTTACACTGGATCATGATAACAAAAACTTGAAGGTGAAAACAGATAAAAAAAAATGATACACGGTCAACATTACCGATTCGAAAATTTTTCAGACTCAATCAGCCTGCAACCAATCGAACAATCCAATAGAACATCATTGCTATATGAGCAAAGACATCACAGAAAACAGTGAGATTTATCATTCAAAAATAATAACAAGGTTTTTTTTTCTGAAATCGCCCAATTGTTCCGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTAAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTGTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATTCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTG</canonical>
            <polymorphic>GAAATTTCTTCATTGCAACGAATAATTGTTATATTTCCAGAATTTTTCTACTAAAGCTATTCCGGTATTATTACCGATATTTCGAACGTTTATCTGATGAATCTTACACTGGATCATGATAACAAAAACTTGAAGGTGAAAACAGATAAAAAAAAATGATACACGGTCAACATTACCGATTCGAAAATTTTTCAGACTCAATCAGCCTGCAACCAATCGAACAATCCAATAGAACATCATTGCTATATGAGCAAAGACATCACAGAAAACAGTGAGATTTATCATTCAAAAATAATAACAAGGTTTTTTTTTCTGAAATCGCCCAATTGTTCCGTTCCAAACTTATCCGAAATCCAAATTWCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTAAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTGTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATTCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>171 145 108 108 108 102 57 38 31 31 31 31 31 6 2</canonical_bands>
                <polymorphic_bands>202 145 108 108 108 102 57 38 31 31 31 31 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGTTCCGTTCCAAACTTAT</pcr_primer_p1>
		<pcr_primer_p2>AATTGAGAAATCACAACACAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTGTTCCGTTCCAAACTTATCCGAAATCCAAATTWCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTAAAAATTAGAAAACTGTGTTGTGATTTCTCAATT</canonical_amplicon>
		<polymorphic_amplicon>ATTGTTCCGTTCCAAACTTATCCGAAATCCAAATTWCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTAAAAATTAGAAAACTGTGTTGTGATTTCTCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28349</snp_id>
        <super_contig>c003601247.Contig1</super_contig>
        <contig_pos>20574</contig_pos>
        <strand>+</strand>
        <context>TCTCAATTTC[A/G]AACTGATTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTGGGCAGAATTAAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTC</left_flank>
        <right_flank>AACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCGAACGTTTATCTGATGAATCTTACACTGGATCATGATAACAAAAACTTGAAGGTGAAAACAGATAAAAAAAAATGATACACGGTCAACATTACCGATTCGAAAATTTTTCAGACTCAATCAGCCTGCAACCAATCGAACAATCCAATAGAACATCATTGCTATATGAGCAAAGACATCACAGAAAACAGTGAGATTTATCATTCAAAAATAATAACAAGGTTTTTTTTTCTGAAATCGCCCAATTGTTCCGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTAAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTGTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATTCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAG</canonical>
            <polymorphic>ATTTCGAACGTTTATCTGATGAATCTTACACTGGATCATGATAACAAAAACTTGAAGGTGAAAACAGATAAAAAAAAATGATACACGGTCAACATTACCGATTCGAAAATTTTTCAGACTCAATCAGCCTGCAACCAATCGAACAATCCAATAGAACATCATTGCTATATGAGCAAAGACATCACAGAAAACAGTGAGATTTATCATTCAAAAATAATAACAAGGTTTTTTTTTCTGAAATCGCCCAATTGTTCCGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCRAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTAAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTGTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATTCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>256 139 139 139 139 99 85 4</canonical_bands>
                <polymorphic_bands>395 139 139 139 99 85 4</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>220 139 139 139 139 99 84 36 5</canonical_bands>
                <polymorphic_bands>359 139 139 139 99 84 36 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCTGTTCCAAACTTATCC</pcr_primer_p1>
		<pcr_primer_p2>AATTGAGAAATCACAACACAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTAAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTAAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28350</snp_id>
        <super_contig>c003601247.Contig1</super_contig>
        <contig_pos>20603</contig_pos>
        <strand>+</strand>
        <context>CAGCCCAATT[G/T]TTCTGTTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATT</left_flank>
        <right_flank>TTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGGATCATGATAACAAAAACTTGAAGGTGAAAACAGATAAAAAAAAATGATACACGGTCAACATTACCGATTCGAAAATTTTTCAGACTCAATCAGCCTGCAACCAATCGAACAATCCAATAGAACATCATTGCTATATGAGCAAAGACATCACAGAAAACAGTGAGATTTATCATTCAAAAATAATAACAAGGTTTTTTTTTCTGAAATCGCCCAATTGTTCCGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTAAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTGTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATTCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGA</canonical>
            <polymorphic>ACTGGATCATGATAACAAAAACTTGAAGGTGAAAACAGATAAAAAAAAATGATACACGGTCAACATTACCGATTCGAAAATTTTTCAGACTCAATCAGCCTGCAACCAATCGAACAATCCAATAGAACATCATTGCTATATGAGCAAAGACATCACAGAAAACAGTGAGATTTATCATTCAAAAATAATAACAAGGTTTTTTTTTCTGAAATCGCCCAATTGTTCCGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTKTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTAAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTGTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATTCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCTGTTCCAAACTTATCC</pcr_primer_p1>
		<pcr_primer_p2>AATTGAGAAATCACAACACAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28351</snp_id>
        <super_contig>c003601247.Contig1</super_contig>
        <contig_pos>20713</contig_pos>
        <strand>+</strand>
        <context>TCTCAATTTC[A/G]AACTGATTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTC</left_flank>
        <right_flank>AACTGATTTTCTATAAAACAGCCCAATTGTTCTGTTCCAAACTTATCCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAACAATCCAATAGAACATCATTGCTATATGAGCAAAGACATCACAGAAAACAGTGAGATTTATCATTCAAAAATAATAACAAGGTTTTTTTTTCTGAAATCGCCCAATTGTTCCGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTAAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTGTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATTCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACGCCCAATTTTTCTGTTCCAAACTTATCCGAAATTCAAATTTCCTGTATATCGTAGCTGATGAGC</canonical>
            <polymorphic>CGAACAATCCAATAGAACATCATTGCTATATGAGCAAAGACATCACAGAAAACAGTGAGATTTATCATTCAAAAATAATAACAAGGTTTTTTTTTCTGAAATCGCCCAATTGTTCCGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCRAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTAAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTGTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATTCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACGCCCAATTTTTCTGTTCCAAACTTATCCGAAATTCAAATTTCCTGTATATCGTAGCTGATGAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>220 139 139 139 139 139 85</canonical_bands>
                <polymorphic_bands>359 139 139 139 139 85</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>221 139 139 139 139 139 84</canonical_bands>
                <polymorphic_bands>360 139 139 139 139 84</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCCTGTATATCCTAGCTGATG</pcr_primer_p1>
		<pcr_primer_p2>AGAAAAATTGGGCTGTTTTATAG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCRAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTAAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTGTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>TTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCRAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTAAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTGTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28352</snp_id>
        <super_contig>c003601247.Contig1</super_contig>
        <contig_pos>20733</contig_pos>
        <strand>+</strand>
        <context>TCTATAAAAC[A/C]GCCCAATTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAAC</left_flank>
        <right_flank>GCCCAATTGTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTGCTATATGAGCAAAGACATCACAGAAAACAGTGAGATTTATCATTCAAAAATAATAACAAGGTTTTTTTTTCTGAAATCGCCCAATTGTTCCGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTAAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTGTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATTCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACGCCCAATTTTTCTGTTCCAAACTTATCCGAAATTCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGA</canonical>
            <polymorphic>CATTGCTATATGAGCAAAGACATCACAGAAAACAGTGAGATTTATCATTCAAAAATAATAACAAGGTTTTTTTTTCTGAAATCGCCCAATTGTTCCGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTAAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACMGCCCAATTGTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATTCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACGCCCAATTTTTCTGTTCCAAACTTATCCGAAATTCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>138 138 85 85 85 85 85 54 54 54 54 54 29</canonical_bands>
                <polymorphic_bands>139 138 138 85 85 85 85 54 54 54 54 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCAGAATTGAAAATTAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAATTTGAATTTCGGATAAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTAAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTGTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATTCAAATTT</canonical_amplicon>
		<polymorphic_amplicon>GGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTAAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACMGCCCAATTGTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATTCAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28353</snp_id>
        <super_contig>c003601247.Contig1</super_contig>
        <contig_pos>20774</contig_pos>
        <strand>+</strand>
        <context>AATCCAAATT[A/T]CCTGTATATC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTATAAAACAGCCCAATTGTTCTGTTCCAAACTTATCCGAAATCCAAATT</left_flank>
        <right_flank>CCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATCATTCAAAAATAATAACAAGGTTTTTTTTTCTGAAATCGCCCAATTGTTCCGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTAAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTGTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATTCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACGCCCAATTTTTCTGTTCCAAACTTATCCGAAATTCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGA</canonical>
            <polymorphic>TTATCATTCAAAAATAATAACAAGGTTTTTTTTTCTGAAATCGCCCAATTGTTCCGTTCCAAACTTATCCGAAATCCAAATTWCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTAAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTGTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATTCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACGCCCAATTTTTCTGTTCCAAACTTATCCGAAATTCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>108 108 108 108 102 101 78 58 31 31 31 31 31 31 31 6 6</canonical_bands>
                <polymorphic_bands>109 108 108 108 108 102 101 58 31 31 31 31 31 31 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAAACTGTGTTGTGATTTCTC</pcr_primer_p1>
		<pcr_primer_p2>GCTACGATATACAGGAAATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTAAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTGTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATTCAAATTTCCTGTATATCGTAGC</canonical_amplicon>
		<polymorphic_amplicon>AGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTAAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTGTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATTCAAATTTCCTGTATATCGTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28354</snp_id>
        <super_contig>c003601247.Contig1</super_contig>
        <contig_pos>20785</contig_pos>
        <strand>+</strand>
        <context>CCTGTATATC[C/G]TAGCTGATGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCCAATTGTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATC</left_flank>
        <right_flank>TAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATAATAACAAGGTTTTTTTTTCTGAAATCGCCCAATTGTTCCGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTAAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTGTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATTCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACGCCCAATTTTTCTGTTCCAAACTTATCCGAAATTCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAA</canonical>
            <polymorphic>AAATAATAACAAGGTTTTTTTTTCTGAAATCGCCCAATTGTTCCGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCSTAGCTGATGAGCGGAAATTTGGGCAGAATTAAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTGTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATTCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACGCCCAATTTTTCTGTTCCAAACTTATCCGAAATTCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAACTGTGTTGTGATTTCTC</pcr_primer_p1>
		<pcr_primer_p2>GCTACGATATACAGGAAATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCSTAGCTGATGAGCGGAAATTTGGGCAGAATTAAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTGTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATTCAAATTTCCTGTATATCGTAGC</canonical_amplicon>
		<polymorphic_amplicon>AGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCSTAGCTGATGAGCGGAAATTTGGGCAGAATTAAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCCTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTGTTCTGTTCCAAACTTATCCGAAATCCAAATTTCCTGTATATCGTAGCTGATGAGCGGAAATTTGGGCAGAATTGAAAATTAGAAAACTGTGTTGTGATTTCTCAATTTCGAACTGATTTTCTATAAAACAGCCCAATTTTTCTGTTCCAAACTTATCCGAAATTCAAATTTCCTGTATATCGTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28355</snp_id>
        <super_contig>c003800591.Contig1</super_contig>
        <contig_pos>7187</contig_pos>
        <strand>+</strand>
        <context>TYTTCGGTAA[A/G]CATTGTAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAA</left_flank>
        <right_flank>CATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATTGCACGAGTTCGACAAGAATTATGGGTTTGGAAGCGGAGTGTGTAGAATATGCAGCAGAAACGCTGGAATTCAACTTTCAGAAAACAGATGATTTTTTGGCTTACCGCAGCATGCATGGCTACCCATGACCAATGAATGAAAGAAGACGAGGTGTTTGCCAAGAATGCAACAGATTTACAGATAAGGTATCCGGGAACGAGGTATGGAATATTTTAAATATTTGTTATTGCCAAAAAAACTAAAAGGATCTTTACCATAAACTAAATCTGTATTTTCCGTGATAACTCCGCCAAGCTTCCCAAAAGAGCGATATTCCCGCCTGATATAGCAGACAAATACGGTAGATAATGCGGATTTTTAATAGTTTTACAGCGAATCCAACAAGAAATGAATAACAATGTTGGGAGGGTAAAAAAAGCAATAGAGATAACAGAGTAAAATAAAAGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTTCCCTAGATGTGAAAAAATGAAAAAAAAAATGTTTTCTACAATTGAATTTTTTGTTATAAAACTGATAAGCAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTTTCAGCTGAGTTATGGCAAAAATGCCGACACATGCCTTTTGAGCGTCATAACTTGAGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTTCGAAACTTTTTTGGTGCATATTTGGACACTGAGAATTATGTTACATCTAAAATCAAAGCCAGAAAAATTCTGGAAAAAAGTTTTTTTTGGATTCACGAACCACTGTTACATCTGAAACTGCTCTGAAAATTCCGACAATGAGAAATTTTCAAAAAACCGATTTTATATGTTTTTGGATTTTACAGCTACTCTCATGCAAAATTTCAAGTCGATTGAGCAATTTT</canonical>
            <polymorphic>ATATTGCACGAGTTCGACAAGAATTATGGGTTTGGAAGCGGAGTGTGTAGAATATGCAGCAGAAACGCTGGAATTCAACTTTCAGAAAACAGATGATTTTTTGGCTTACCGCAGCATGCATGGCTACCCATGACCAATGAATGAAAGAAGACGAGGTGTTTGCCAAGAATGCAACAGATTTACAGATAAGGTATCCGGGAACGAGGTATGGAATATTTTAAATATTTGTTATTGCCAAAAAAACTAAAAGGATCTTTACCATAAACTAAATCTGTATTTTCCGTGATAACTCCGCCAAGCTTCCCAAAAGAGCGATATTCCCGCCTGATATAGCAGACAAATACGGTAGATAATGCGGATTTTTAATAGTTTTACAGCGAATCCAACAAGAAATGAATAACAATGTTGGGAGGGTAAAAAAAGCAATAGAGATAACAGAGTAAAATAAAAGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAARCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTTCCCTAGATGTGAAAAAATGAAAAAAAAAATGTTTTCTACAATTGAATTTTTTGTTATAAAACTGATAAGCAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTTTCAGCTGAGTTATGGCAAAAATGCCGACACATGCCTTTTGAGCGTCATAACTTGAGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTTCGAAACTTTTTTGGTGCATATTTGGACACTGAGAATTATGTTACATCTAAAATCAAAGCCAGAAAAATTCTGGAAAAAAGTTTTTTTTGGATTCACGAACCACTGTTACATCTGAAACTGCTCTGAAAATTCCGACAATGAGAAATTTTCAAAAAACCGATTTTATATGTTTTTGGATTTTACAGCTACTCTCATGCAAAATTTCAAGTCGATTGAGCAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAAAAGGCGAGAGCTATTAGT</pcr_primer_p1>
		<pcr_primer_p2>AGAAGTGGTGAGGAGAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>601</pcr_amplicon_size>
		<canonical_amplicon>AATAAAAGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCA</canonical_amplicon>
		<polymorphic_amplicon>AATAAAAGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAARCATTGTAACAAAAGTTTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28356</snp_id>
        <super_contig>c003800591.Contig1</super_contig>
        <contig_pos>7216</contig_pos>
        <strand>+</strand>
        <context>TCAATTGTAG[C/T]AAAAAAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAG</left_flank>
        <right_flank>AAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTTCCCTAGATGTGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTGGAAGCGGAGTGTGTAGAATATGCAGCAGAAACGCTGGAATTCAACTTTCAGAAAACAGATGATTTTTTGGCTTACCGCAGCATGCATGGCTACCCATGACCAATGAATGAAAGAAGACGAGGTGTTTGCCAAGAATGCAACAGATTTACAGATAAGGTATCCGGGAACGAGGTATGGAATATTTTAAATATTTGTTATTGCCAAAAAAACTAAAAGGATCTTTACCATAAACTAAATCTGTATTTTCCGTGATAACTCCGCCAAGCTTCCCAAAAGAGCGATATTCCCGCCTGATATAGCAGACAAATACGGTAGATAATGCGGATTTTTAATAGTTTTACAGCGAATCCAACAAGAAATGAATAACAATGTTGGGAGGGTAAAAAAAGCAATAGAGATAACAGAGTAAAATAAAAGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTTCCCTAGATGTGAAAAAATGAAAAAAAAAATGTTTTCTACAATTGAATTTTTTGTTATAAAACTGATAAGCAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTTTCAGCTGAGTTATGGCAAAAATGCCGACACATGCCTTTTGAGCGTCATAACTTGAGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTTCGAAACTTTTTTGGTGCATATTTGGACACTGAGAATTATGTTACATCTAAAATCAAAGCCAGAAAAATTCTGGAAAAAAGTTTTTTTTGGATTCACGAACCACTGTTACATCTGAAACTGCTCTGAAAATTCCGACAATGAGAAATTTTCAAAAAACCGATTTTATATGTTTTTGGATTTTACAGCTACTCTCATGCAAAATTTCAAGTCGATTGAGCAATTTTGAACAAAGTTGTGAATGTTCGAAAAAATT</canonical>
            <polymorphic>GTTTGGAAGCGGAGTGTGTAGAATATGCAGCAGAAACGCTGGAATTCAACTTTCAGAAAACAGATGATTTTTTGGCTTACCGCAGCATGCATGGCTACCCATGACCAATGAATGAAAGAAGACGAGGTGTTTGCCAAGAATGCAACAGATTTACAGATAAGGTATCCGGGAACGAGGTATGGAATATTTTAAATATTTGTTATTGCCAAAAAAACTAAAAGGATCTTTACCATAAACTAAATCTGTATTTTCCGTGATAACTCCGCCAAGCTTCCCAAAAGAGCGATATTCCCGCCTGATATAGCAGACAAATACGGTAGATAATGCGGATTTTTAATAGTTTTACAGCGAATCCAACAAGAAATGAATAACAATGTTGGGAGGGTAAAAAAAGCAATAGAGATAACAGAGTAAAATAAAAGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGYAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTTCCCTAGATGTGAAAAAATGAAAAAAAAAATGTTTTCTACAATTGAATTTTTTGTTATAAAACTGATAAGCAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTTTCAGCTGAGTTATGGCAAAAATGCCGACACATGCCTTTTGAGCGTCATAACTTGAGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTTCGAAACTTTTTTGGTGCATATTTGGACACTGAGAATTATGTTACATCTAAAATCAAAGCCAGAAAAATTCTGGAAAAAAGTTTTTTTTGGATTCACGAACCACTGTTACATCTGAAACTGCTCTGAAAATTCCGACAATGAGAAATTTTCAAAAAACCGATTTTATATGTTTTTGGATTTTACAGCTACTCTCATGCAAAATTTCAAGTCGATTGAGCAATTTTGAACAAAGTTGTGAATGTTCGAAAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTATTAGTCCATTCTTCAAGATAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAGTGGTGAGGAGAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>587</pcr_amplicon_size>
		<canonical_amplicon>GCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTA</canonical_amplicon>
		<polymorphic_amplicon>GCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGYAAAAAAATTTTCTCATTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28357</snp_id>
        <super_contig>c003800591.Contig1</super_contig>
        <contig_pos>7252</contig_pos>
        <strand></strand>
        <context>TTAGAGATTT[T/C]CCCTAGATGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTT</left_flank>
        <right_flank>CCCTAGATGTGAAAAAATGAAAAAAAAAATGTTTTCTACAATTGAATTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCTGGAATTCAACTTTCAGAAAACAGATGATTTTTTGGCTTACCGCAGCATGCATGGCTACCCATGACCAATGAATGAAAGAAGACGAGGTGTTTGCCAAGAATGCAACAGATTTACAGATAAGGTATCCGGGAACGAGGTATGGAATATTTTAAATATTTGTTATTGCCAAAAAAACTAAAAGGATCTTTACCATAAACTAAATCTGTATTTTCCGTGATAACTCCGCCAAGCTTCCCAAAAGAGCGATATTCCCGCCTGATATAGCAGACAAATACGGTAGATAATGCGGATTTTTAATAGTTTTACAGCGAATCCAACAAGAAATGAATAACAATGTTGGGAGGGTAAAAAAAGCAATAGAGATAACAGAGTAAAATAAAAGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTTCCCTAGATGTGAAAAAATGAAAAAAAAAATGTTTTCTACAATTGAATTTTTTGTTATAAAACTGATAAGCAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTTTCAGCTGAGTTATGGCAAAAATGCCGACACATGCCTTTTGAGCGTCATAACTTGAGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTTCGAAACTTTTTTGGTGCATATTTGGACACTGAGAATTATGTTACATCTAAAATCAAAGCCAGAAAAATTCTGGAAAAAAGTTTTTTTTGGATTCACGAACCACTGTTACATCTGAAACTGCTCTGAAAATTCCGACAATGAGAAATTTTCAAAAAACCGATTTTATATGTTTTTGGATTTTACAGCTACTCTCATGCAAAATTTCAAGTCGATTGAGCAATTTTGAACAAAGTTGTGAATGTTCGAAAAAATTCTCCTCACCACTTCTCGGCACTGTATATCAAACATT</canonical>
            <polymorphic>CGCTGGAATTCAACTTTCAGAAAACAGATGATTTTTTGGCTTACCGCAGCATGCATGGCTACCCATGACCAATGAATGAAAGAAGACGAGGTGTTTGCCAAGAATGCAACAGATTTACAGATAAGGTATCCGGGAACGAGGTATGGAATATTTTAAATATTTGTTATTGCCAAAAAAACTAAAAGGATCTTTACCATAAACTAAATCTGTATTTTCCGTGATAACTCCGCCAAGCTTCCCAAAAGAGCGATATTCCCGCCTGATATAGCAGACAAATACGGTAGATAATGCGGATTTTTAATAGTTTTACAGCGAATCCAACAAGAAATGAATAACAATGTTGGGAGGGTAAAAAAAGCAATAGAGATAACAGAGTAAAATAAAAGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTYCCCTAGATGTGAAAAAATGAAAAAAAAAATGTTTTCTACAATTGAATTTTTTGTTATAAAACTGATAAGCAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTTTCAGCTGAGTTATGGCAAAAATGCCGACACATGCCTTTTGAGCGTCATAACTTGAGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTTCGAAACTTTTTTGGTGCATATTTGGACACTGAGAATTATGTTACATCTAAAATCAAAGCCAGAAAAATTCTGGAAAAAAGTTTTTTTTGGATTCACGAACCACTGTTACATCTGAAACTGCTCTGAAAATTCCGACAATGAGAAATTTTCAAAAAACCGATTTTATATGTTTTTGGATTTTACAGCTACTCTCATGCAAAATTTCAAGTCGATTGAGCAATTTTGAACAAAGTTGTGAATGTTCGAAAAAATTCTCCTCACCACTTCTCGGCACTGTATATCAAACATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTATTAGTCCATTCTTCAAGATAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAGTGGTGAGGAGAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>587</pcr_amplicon_size>
		<canonical_amplicon>GCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTTCCCTAGATGTGAAAAAATGAAAAAAAAAATGTTTTCTACAATTGAATTTTTTGTTATAAAACTGATAAGCAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTTTCAGCTGAGTTATGGCAAAAATGCCGACACATGCCTTTTGAGCGTCATAACTTGAGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTTCGAAACTTTTTTGGTGCATATTTGGACACTGAGAATTATGTTACATCTAAAATCAAAGCCAGAAAAATTCTGGAAAAAAGTTTTTTTTGGATTCACGAACCACTGTTACATCTGAAACTGCTCTGAAAATTCCGACAATGAGAAATTTTCAAAAAACCGATTTTATATGTTTTTGGATTTTACAGCTACTCTCATGCAAAATTTCAAGTCGATTGAGCAATTTTGAACAAAGTTGTGAATGTTCGAAAAAATTCTCCTCACCACTTCT</canonical_amplicon>
		<polymorphic_amplicon>GCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTYCCCTAGATGTGAAAAAATGAAAAAAAAAATGTTTTCTACAATTGAATTTTTTGTTATAAAACTGATAAGCAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTTTCAGCTGAGTTATGGCAAAAATGCCGACACATGCCTTTTGAGCGTCATAACTTGAGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTTCGAAACTTTTTTGGTGCATATTTGGACACTGAGAATTATGTTACATCTAAAATCAAAGCCAGAAAAATTCTGGAAAAAAGTTTTTTTTGGATTCACGAACCACTGTTACATCTGAAACTGCTCTGAAAATTCCGACAATGAGAAATTTTCAAAAAACCGATTTTATATGTTTTTGGATTTTACAGCTACTCTCATGCAAAATTTCAAGTCGATTGAGCAATTTTGAACAAAGTTGTGAATGTTCGAAAAAATTCTCCTCACCACTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28358</snp_id>
        <super_contig>c003800591.Contig1</super_contig>
        <contig_pos>7278</contig_pos>
        <strand></strand>
        <context>aatgaaaaaa[A/G]aaatgttttc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCATTTTTAGATTTTAGAGATTTTCCCTAGATGTGAAAAAATGAAAAAA</left_flank>
        <right_flank>AAATGTTTTCTACAATTGAATTTTTTGTTATAAAACTGATAAGCAACTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGATTTTTTGGCTTACCGCAGCATGCATGGCTACCCATGACCAATGAATGAAAGAAGACGAGGTGTTTGCCAAGAATGCAACAGATTTACAGATAAGGTATCCGGGAACGAGGTATGGAATATTTTAAATATTTGTTATTGCCAAAAAAACTAAAAGGATCTTTACCATAAACTAAATCTGTATTTTCCGTGATAACTCCGCCAAGCTTCCCAAAAGAGCGATATTCCCGCCTGATATAGCAGACAAATACGGTAGATAATGCGGATTTTTAATAGTTTTACAGCGAATCCAACAAGAAATGAATAACAATGTTGGGAGGGTAAAAAAAGCAATAGAGATAACAGAGTAAAATAAAAGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTTCCCTAGATGTGAAAAAATGAAAAAAAAAATGTTTTCTACAATTGAATTTTTTGTTATAAAACTGATAAGCAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTTTCAGCTGAGTTATGGCAAAAATGCCGACACATGCCTTTTGAGCGTCATAACTTGAGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTTCGAAACTTTTTTGGTGCATATTTGGACACTGAGAATTATGTTACATCTAAAATCAAAGCCAGAAAAATTCTGGAAAAAAGTTTTTTTTGGATTCACGAACCACTGTTACATCTGAAACTGCTCTGAAAATTCCGACAATGAGAAATTTTCAAAAAACCGATTTTATATGTTTTTGGATTTTACAGCTACTCTCATGCAAAATTTCAAGTCGATTGAGCAATTTTGAACAAAGTTGTGAATGTTCGAAAAAATTCTCCTCACCACTTCTCGGCACTGTATATCAAACATTTTTTTATAAAGATTAGGATTAATTCT</canonical>
            <polymorphic>GATGATTTTTTGGCTTACCGCAGCATGCATGGCTACCCATGACCAATGAATGAAAGAAGACGAGGTGTTTGCCAAGAATGCAACAGATTTACAGATAAGGTATCCGGGAACGAGGTATGGAATATTTTAAATATTTGTTATTGCCAAAAAAACTAAAAGGATCTTTACCATAAACTAAATCTGTATTTTCCGTGATAACTCCGCCAAGCTTCCCAAAAGAGCGATATTCCCGCCTGATATAGCAGACAAATACGGTAGATAATGCGGATTTTTAATAGTTTTACAGCGAATCCAACAAGAAATGAATAACAATGTTGGGAGGGTAAAAAAAGCAATAGAGATAACAGAGTAAAATAAAAGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTTCCCTAGATGTGAAAAAATGAAAAAARAAATGTTTTCTACAATTGAATTTTTTGTTATAAAACTGATAAGCAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTTTCAGCTGAGTTATGGCAAAAATGCCGACACATGCCTTTTGAGCGTCATAACTTGAGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTTCGAAACTTTTTTGGTGCATATTTGGACACTGAGAATTATGTTACATCTAAAATCAAAGCCAGAAAAATTCTGGAAAAAAGTTTTTTTTGGATTCACGAACCACTGTTACATCTGAAACTGCTCTGAAAATTCCGACAATGAGAAATTTTCAAAAAACCGATTTTATATGTTTTTGGATTTTACAGCTACTCTCATGCAAAATTTCAAGTCGATTGAGCAATTTTGAACAAAGTTGTGAATGTTCGAAAAAATTCTCCTCACCACTTCTCGGCACTGTATATCAAACATTTTTTTATAAAGATTAGGATTAATTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTATTAGTCCATTCTTCAAGATAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAGTGGTGAGGAGAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>587</pcr_amplicon_size>
		<canonical_amplicon>GCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTTCCCTAGATGTGAAAAAATGAAAAAAAAAATGTTTTCTACAATTGAATTTTTTGTTATAAAACTGATAAGCAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTTTCAGCTGAGTTATGGCAAAAATGCCGACACATGCCTTTTGAGCGTCATAACTTGAGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTTCGAAACTTTTTTGGTGCATATTTGGACACTGAGAATTATGTTACATCTAAAATCAAAGCCAGAAAAATTCTGGAAAAAAGTTTTTTTTGGATTCACGAACCACTGTTACATCTGAAACTGCTCTGAAAATTCCGACAATGAGAAATTTTCAAAAAACCGATTTTATATGTTTTTGGATTTTACAGCTACTCTCATGCAAAATTTCAAGTCGATTGAGCAATTTTGAACAAAGTTGTGAATGTTCGAAAAAATTCTCCTCACCACTTCT</canonical_amplicon>
		<polymorphic_amplicon>GCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTTCCCTAGATGTGAAAAAATGAAAAAARAAATGTTTTCTACAATTGAATTTTTTGTTATAAAACTGATAAGCAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTTTCAGCTGAGTTATGGCAAAAATGCCGACACATGCCTTTTGAGCGTCATAACTTGAGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTTCGAAACTTTTTTGGTGCATATTTGGACACTGAGAATTATGTTACATCTAAAATCAAAGCCAGAAAAATTCTGGAAAAAAGTTTTTTTTGGATTCACGAACCACTGTTACATCTGAAACTGCTCTGAAAATTCCGACAATGAGAAATTTTCAAAAAACCGATTTTATATGTTTTTGGATTTTACAGCTACTCTCATGCAAAATTTCAAGTCGATTGAGCAATTTTGAACAAAGTTGTGAATGTTCGAAAAAATTCTCCTCACCACTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28359</snp_id>
        <super_contig>c003800591.Contig1</super_contig>
        <contig_pos>7403</contig_pos>
        <strand></strand>
        <context>gccgacacat[G/A]ccttttragc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGCATCAAAAATACATTTTCAGCTGAGTTATGGCAAAAATGCCGACACAT</left_flank>
        <right_flank>CCTTTTGAGCGTCATAACTTGAGAGCATCATAACTCGAGAGCCCGACTTC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAAATATTTGTTATTGCCAAAAAAACTAAAAGGATCTTTACCATAAACTAAATCTGTATTTTCCGTGATAACTCCGCCAAGCTTCCCAAAAGAGCGATATTCCCGCCTGATATAGCAGACAAATACGGTAGATAATGCGGATTTTTAATAGTTTTACAGCGAATCCAACAAGAAATGAATAACAATGTTGGGAGGGTAAAAAAAGCAATAGAGATAACAGAGTAAAATAAAAGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTTCCCTAGATGTGAAAAAATGAAAAAAAAAATGTTTTCTACAATTGAATTTTTTGTTATAAAACTGATAAGCAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTTTCAGCTGAGTTATGGCAAAAATGCCGACACATGCCTTTTGAGCGTCATAACTTGAGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTTCGAAACTTTTTTGGTGCATATTTGGACACTGAGAATTATGTTACATCTAAAATCAAAGCCAGAAAAATTCTGGAAAAAAGTTTTTTTTGGATTCACGAACCACTGTTACATCTGAAACTGCTCTGAAAATTCCGACAATGAGAAATTTTCAAAAAACCGATTTTATATGTTTTTGGATTTTACAGCTACTCTCATGCAAAATTTCAAGTCGATTGAGCAATTTTGAACAAAGTTGTGAATGTTCGAAAAAATTCTCCTCACCACTTCTCGGCACTGTATATCAAACATTTTTTTATAAAGATTAGGATTAATTCTATTACAAGATTATGATTCATTCTAAAACAGATCAAAAGTCAGGAATCCCGAGAATGTACATATTTTCGGATCAGTTTAGGAACACTCTGAAATGGAAAATAAACTAGTCAAAACATATGAAAATG</canonical>
            <polymorphic>TTTAAATATTTGTTATTGCCAAAAAAACTAAAAGGATCTTTACCATAAACTAAATCTGTATTTTCCGTGATAACTCCGCCAAGCTTCCCAAAAGAGCGATATTCCCGCCTGATATAGCAGACAAATACGGTAGATAATGCGGATTTTTAATAGTTTTACAGCGAATCCAACAAGAAATGAATAACAATGTTGGGAGGGTAAAAAAAGCAATAGAGATAACAGAGTAAAATAAAAGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTTCCCTAGATGTGAAAAAATGAAAAAAAAAATGTTTTCTACAATTGAATTTTTTGTTATAAAACTGATAAGCAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTTTCAGCTGAGTTATGGCAAAAATGCCGACACATRCCTTTTGAGCGTCATAACTTGAGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTTCGAAACTTTTTTGGTGCATATTTGGACACTGAGAATTATGTTACATCTAAAATCAAAGCCAGAAAAATTCTGGAAAAAAGTTTTTTTTGGATTCACGAACCACTGTTACATCTGAAACTGCTCTGAAAATTCCGACAATGAGAAATTTTCAAAAAACCGATTTTATATGTTTTTGGATTTTACAGCTACTCTCATGCAAAATTTCAAGTCGATTGAGCAATTTTGAACAAAGTTGTGAATGTTCGAAAAAATTCTCCTCACCACTTCTCGGCACTGTATATCAAACATTTTTTTATAAAGATTAGGATTAATTCTATTACAAGATTATGATTCATTCTAAAACAGATCAAAAGTCAGGAATCCCGAGAATGTACATATTTTCGGATCAGTTTAGGAACACTCTGAAATGGAAAATAAACTAGTCAAAACATATGAAAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>497 256 247</canonical_bands>
                <polymorphic_bands>753 247</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTATTAGTCCATTCTTCAAGATAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAGTGGTGAGGAGAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>587</pcr_amplicon_size>
		<canonical_amplicon>GCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTTCCCTAGATGTGAAAAAATGAAAAAAAAAATGTTTTCTACAATTGAATTTTTTGTTATAAAACTGATAAGCAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTTTCAGCTGAGTTATGGCAAAAATGCCGACACATGCCTTTTGAGCGTCATAACTTGAGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTTCGAAACTTTTTTGGTGCATATTTGGACACTGAGAATTATGTTACATCTAAAATCAAAGCCAGAAAAATTCTGGAAAAAAGTTTTTTTTGGATTCACGAACCACTGTTACATCTGAAACTGCTCTGAAAATTCCGACAATGAGAAATTTTCAAAAAACCGATTTTATATGTTTTTGGATTTTACAGCTACTCTCATGCAAAATTTCAAGTCGATTGAGCAATTTTGAACAAAGTTGTGAATGTTCGAAAAAATTCTCCTCACCACTTCT</canonical_amplicon>
		<polymorphic_amplicon>GCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTTCCCTAGATGTGAAAAAATGAAAAAAAAAATGTTTTCTACAATTGAATTTTTTGTTATAAAACTGATAAGCAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTTTCAGCTGAGTTATGGCAAAAATGCCGACACATRCCTTTTGAGCGTCATAACTTGAGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTTCGAAACTTTTTTGGTGCATATTTGGACACTGAGAATTATGTTACATCTAAAATCAAAGCCAGAAAAATTCTGGAAAAAAGTTTTTTTTGGATTCACGAACCACTGTTACATCTGAAACTGCTCTGAAAATTCCGACAATGAGAAATTTTCAAAAAACCGATTTTATATGTTTTTGGATTTTACAGCTACTCTCATGCAAAATTTCAAGTCGATTGAGCAATTTTGAACAAAGTTGTGAATGTTCGAAAAAATTCTCCTCACCACTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28360</snp_id>
        <super_contig>c003800591.Contig1</super_contig>
        <contig_pos>7410</contig_pos>
        <strand></strand>
        <context>catrcctttt[G/A]agcgtcataa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAATACATTTTCAGCTGAGTTATGGCAAAAATGCCGACACATGCCTTTT</left_flank>
        <right_flank>AGCGTCATAACTTGAGAGCATCATAACTCGAGAGCCCGACTTCCAAAATT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGTTATTGCCAAAAAAACTAAAAGGATCTTTACCATAAACTAAATCTGTATTTTCCGTGATAACTCCGCCAAGCTTCCCAAAAGAGCGATATTCCCGCCTGATATAGCAGACAAATACGGTAGATAATGCGGATTTTTAATAGTTTTACAGCGAATCCAACAAGAAATGAATAACAATGTTGGGAGGGTAAAAAAAGCAATAGAGATAACAGAGTAAAATAAAAGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTTCCCTAGATGTGAAAAAATGAAAAAAAAAATGTTTTCTACAATTGAATTTTTTGTTATAAAACTGATAAGCAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTTTCAGCTGAGTTATGGCAAAAATGCCGACACATGCCTTTTGAGCGTCATAACTTGAGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTTCGAAACTTTTTTGGTGCATATTTGGACACTGAGAATTATGTTACATCTAAAATCAAAGCCAGAAAAATTCTGGAAAAAAGTTTTTTTTGGATTCACGAACCACTGTTACATCTGAAACTGCTCTGAAAATTCCGACAATGAGAAATTTTCAAAAAACCGATTTTATATGTTTTTGGATTTTACAGCTACTCTCATGCAAAATTTCAAGTCGATTGAGCAATTTTGAACAAAGTTGTGAATGTTCGAAAAAATTCTCCTCACCACTTCTCGGCACTGTATATCAAACATTTTTTTATAAAGATTAGGATTAATTCTATTACAAGATTATGATTCATTCTAAAACAGATCAAAAGTCAGGAATCCCGAGAATGTACATATTTTCGGATCAGTTTAGGAACACTCTGAAATGGAAAATAAACTAGTCAAAACATATGAAAATGATGAACC</canonical>
            <polymorphic>ATTTGTTATTGCCAAAAAAACTAAAAGGATCTTTACCATAAACTAAATCTGTATTTTCCGTGATAACTCCGCCAAGCTTCCCAAAAGAGCGATATTCCCGCCTGATATAGCAGACAAATACGGTAGATAATGCGGATTTTTAATAGTTTTACAGCGAATCCAACAAGAAATGAATAACAATGTTGGGAGGGTAAAAAAAGCAATAGAGATAACAGAGTAAAATAAAAGGCGAGAGCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTTCCCTAGATGTGAAAAAATGAAAAAAAAAATGTTTTCTACAATTGAATTTTTTGTTATAAAACTGATAAGCAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTTTCAGCTGAGTTATGGCAAAAATGCCGACACATGCCTTTTRAGCGTCATAACTTGAGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTTCGAAACTTTTTTGGTGCATATTTGGACACTGAGAATTATGTTACATCTAAAATCAAAGCCAGAAAAATTCTGGAAAAAAGTTTTTTTTGGATTCACGAACCACTGTTACATCTGAAACTGCTCTGAAAATTCCGACAATGAGAAATTTTCAAAAAACCGATTTTATATGTTTTTGGATTTTACAGCTACTCTCATGCAAAATTTCAAGTCGATTGAGCAATTTTGAACAAAGTTGTGAATGTTCGAAAAAATTCTCCTCACCACTTCTCGGCACTGTATATCAAACATTTTTTTATAAAGATTAGGATTAATTCTATTACAAGATTATGATTCATTCTAAAACAGATCAAAAGTCAGGAATCCCGAGAATGTACATATTTTCGGATCAGTTTAGGAACACTCTGAAATGGAAAATAAACTAGTCAAAACATATGAAAATGATGAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTATTAGTCCATTCTTCAAGATAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAGTGGTGAGGAGAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>587</pcr_amplicon_size>
		<canonical_amplicon>GCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTTCCCTAGATGTGAAAAAATGAAAAAAAAAATGTTTTCTACAATTGAATTTTTTGTTATAAAACTGATAAGCAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTTTCAGCTGAGTTATGGCAAAAATGCCGACACATGCCTTTTGAGCGTCATAACTTGAGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTTCGAAACTTTTTTGGTGCATATTTGGACACTGAGAATTATGTTACATCTAAAATCAAAGCCAGAAAAATTCTGGAAAAAAGTTTTTTTTGGATTCACGAACCACTGTTACATCTGAAACTGCTCTGAAAATTCCGACAATGAGAAATTTTCAAAAAACCGATTTTATATGTTTTTGGATTTTACAGCTACTCTCATGCAAAATTTCAAGTCGATTGAGCAATTTTGAACAAAGTTGTGAATGTTCGAAAAAATTCTCCTCACCACTTCT</canonical_amplicon>
		<polymorphic_amplicon>GCTATTAGTCCATTCTTCAAGATAAATATTGCTCTTCGGTAAGCATTGTAACAAAAGTTTTTCAATTGTAGAAAAAAAATTTTCTCATTTTTAGATTTTAGAGATTTTCCCTAGATGTGAAAAAATGAAAAAAAAAATGTTTTCTACAATTGAATTTTTTGTTATAAAACTGATAAGCAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTTTCAGCTGAGTTATGGCAAAAATGCCGACACATGCCTTTTRAGCGTCATAACTTGAGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTTCGAAACTTTTTTGGTGCATATTTGGACACTGAGAATTATGTTACATCTAAAATCAAAGCCAGAAAAATTCTGGAAAAAAGTTTTTTTTGGATTCACGAACCACTGTTACATCTGAAACTGCTCTGAAAATTCCGACAATGAGAAATTTTCAAAAAACCGATTTTATATGTTTTTGGATTTTACAGCTACTCTCATGCAAAATTTCAAGTCGATTGAGCAATTTTGAACAAAGTTGTGAATGTTCGAAAAAATTCTCCTCACCACTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28366</snp_id>
        <super_contig>c003800591.Contig1</super_contig>
        <contig_pos>48747</contig_pos>
        <strand></strand>
        <context>AAAACATCGA[C/T]TATGTCAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTACACCCGCTCAAGTGGGAAACTTTCAGATCCAGACTCAAAACATCGA</left_flank>
        <right_flank>TATGTCAAAATTGGCCACCCTTTTTGGAATTTTTCGATGAGTGAAAGAAT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAGTTGAACTCCTCGAGGAGTATATTTAAACGGAATTTCAGAAAACATTTATTTCATGTCCCTCCACATTTAACTTTTCCAGAAAAGACCAGACATTTGCAATTGCTAATTATGGAATTAATGACAAATGTGAATGGCTACAGTACTCCAATCGTATTATATCCCAAGTTTTATGTATTTGGCTACATTCTACAATTATTAGCCGACTGTTAATTGTAAATAATTTCAAAGTGATAAGTGATTATCAAATTTTGATTATTGTACAATCTGCGATCAATATTGTTGCTTGTATTTTCGAATTAATAGTCAATGAGGTAATTTTAAATTTTTAATGTTTGAATAAACTAGATCAGTATCAAAACTATATAGTATGAAAAAGTTAACAACTGTTGGATTTTTTAAATAACATTTATTCATTAAATATTCAAGTATTCAATAAATTTTTATTTTTACACCCGCTCAAGTGGGAAACTTTCAGATCCAGACTCAAAACATCGACTATGTCAAAATTGGCCACCCTTTTTGGAATTTTTCGATGAGTGAAAGAATTTTGTATATAATCTTCATGAATACGTCAGCAACGAGCTCCCAGGATATATTGATGTTATTCAATTTGCACAGACTTTTTATAATAAAGAAGTGAGTCAAAAGTTAAAAAATTGAGAAAATCCCGACAATTCAAAGACTATCATTCTTATAATAAATAAACGAAGTTGCGTCTCTTTCTCTCTCTGTCAGTCTGTCCGCACACGTTTAAAAAGTTGAAATATAATATAAATTTAAGTGACCCTTTGAGTAAGACAGAGGAGCGAAGCGACGAACAGTTAAAGATATAGATTAAATCGCGCCGACGGCGCACCAGCCAACTGTTCGAAGCGCCGGAGGCGCGGCAAACGGGCTGGTATGTTTCGAAAAACTCAAGAATCACTGAACATTTTCGTGTTATTAAATTTCCAGAAAACGTTTGCTCATCCTCTACTCCATCGCCATACCTCTGAT</canonical>
            <polymorphic>CAAGTTGAACTCCTCGAGGAGTATATTTAAACGGAATTTCAGAAAACATTTATTTCATGTCCCTCCACATTTAACTTTTCCAGAAAAGACCAGACATTTGCAATTGCTAATTATGGAATTAATGACAAATGTGAATGGCTACAGTACTCCAATCGTATTATATCCCAAGTTTTATGTATTTGGCTACATTCTACAATTATTAGCCGACTGTTAATTGTAAATAATTTCAAAGTGATAAGTGATTATCAAATTTTGATTATTGTACAATCTGCGATCAATATTGTTGCTTGTATTTTCGAATTAATAGTCAATGAGGTAATTTTAAATTTTTAATGTTTGAATAAACTAGATCAGTATCAAAACTATATAGTATGAAAAAGTTAACAACTGTTGGATTTTTTAAATAACATTTATTCATTAAATATTCAAGTATTCAATAAATTTTTATTTTTACACCCGCTCAAGTGGGAAACTTTCAGATCCAGACTCAAAACATCGAYTATGTCAAAATTGGCCACCCTTTTTGGAATTTTTCGATGAGTGAAAGAATTTTGTATATAATCTTCATGAATACGTCAGCAACGAGCTCCCAGGATATATTGATGTTATTCAATTTGCACAGACTTTTTATAATAAAGAAGTGAGTCAAAAGTTAAAAAATTGAGAAAATCCCGACAATTCAAAGACTATCATTCTTATAATAAATAAACGAAGTTGCGTCTCTTTCTCTCTCTGTCAGTCTGTCCGCACACGTTTAAAAAGTTGAAATATAATATAAATTTAAGTGACCCTTTGAGTAAGACAGAGGAGCGAAGCGACGAACAGTTAAAGATATAGATTAAATCGCGCCGACGGCGCACCAGCCAACTGTTCGAAGCGCCGGAGGCGCGGCAAACGGGCTGGTATGTTTCGAAAAACTCAAGAATCACTGAACATTTTCGTGTTATTAAATTTCCAGAAAACGTTTGCTCATCCTCTACTCCATCGCCATACCTCTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNGTC</site>
                <isoschizomers>
                    <enzyme>AspI</enzyme>
                    <enzyme>PflFI</enzyme>
                    <enzyme>PsyI</enzyme>
                    <enzyme>TelI</enzyme>
                    <enzyme>Tth111I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCGAATTAATAGTCAATGAGGT</pcr_primer_p1>
		<pcr_primer_p2>GCTGACGTATTCATGAAGATTAT</pcr_primer_p2>
		<pcr_amplicon_size>286</pcr_amplicon_size>
		<canonical_amplicon>TTCGAATTAATAGTCAATGAGGTAATTTTAAATTTTTAATGTTTGAATAAACTAGATCAGTATCAAAACTATATAGTATGAAAAAGTTAACAACTGTTGGATTTTTTAAATAACATTTATTCATTAAATATTCAAGTATTCAATAAATTTTTATTTTTACACCCGCTCAAGTGGGAAACTTTCAGATCCAGACTCAAAACATCGACTATGTCAAAATTGGCCACCCTTTTTGGAATTTTTCGATGAGTGAAAGAATTTTGTATATAATCTTCATGAATACGTCAGC</canonical_amplicon>
		<polymorphic_amplicon>TTCGAATTAATAGTCAATGAGGTAATTTTAAATTTTTAATGTTTGAATAAACTAGATCAGTATCAAAACTATATAGTATGAAAAAGTTAACAACTGTTGGATTTTTTAAATAACATTTATTCATTAAATATTCAAGTATTCAATAAATTTTTATTTTTACACCCGCTCAAGTGGGAAACTTTCAGATCCAGACTCAAAACATCGAYTATGTCAAAATTGGCCACCCTTTTTGGAATTTTTCGATGAGTGAAAGAATTTTGTATATAATCTTCATGAATACGTCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28367</snp_id>
        <super_contig>c003800591.Contig1</super_contig>
        <contig_pos>56465</contig_pos>
        <strand>+</strand>
        <context>TTATTGTAGA[A/G]GTCTCGATCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCATGAGTGCTCATTCTATGTTGCAGATGGCTGGGAAGCTTATTGTAGA</left_flank>
        <right_flank>GTCTCGATCGCGACCTAAAAATGTTTTTCGTTAATTTTGCTTAAAGCCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAGTTGTCGTGTTAATATCATTTACAGATTCAGTCATATTCTCAGCCAATTTTTCCAGTAACTCTTCGAGATGATGAACATGTCGGAGTGTTTTCTGAAAAAAAAAAATACATTTTGAAGCAATTAAAAAATGTTCAGACTGGAACTATGCCAGTGTCTGCAAAATATTAAACTCCGTCAGATCTCTGAGTATGCTTCAAGCGAGCCTTAAAACCTTTCATGCTCCCCAAAAAATCTCACTGCTTTTTCATGTCGACTCTCCACGGACCAAAACATTGCAGCACCCAGCAACGTATATAAAAGGACCAAAATTACGACACAAATGTGCCGAAATCCTATTTGCTTCCTATGAAAAGCAAACCAATACATGGATTTATCGAATCGTCGCAGTGTTGGAATCACGGGCTGGCCAAGTGCTCCAGGACTACTGTATCTGCTGATACCATCTCCATGAGTGCTCATTCTATGTTGCAGATGGCTGGGAAGCTTATTGTAGAAGTCTCGATCGCGACCTAAAAATGTTTTTCGTTAATTTTGCTTAAAGCCACTGTACCTGTCACGGTATAGTTATTTCTCTCATAATATTTCTCAATCGGGTCTTCTGGATTTCCAACTTTTGTTCCAATCGTCGCGTTTCCACGATCTATGGACGCGTGTCTGGTGTACCTGTGAGTACTAAATTGACTCTTATCCAACTCTGAAACACTGTCTAAGCGATTTCTTTCTTCCAGATCTGCATTGCTGACGCTTACGCTGCGGCTGAAGAAAATAATTTTTGAGGTCAAAGAAAAAAAGCCAAAACATTAATATGTAAGTAACTAAGCACTTGTATTGGATCTAGCCACTAAACAAGTTTTTAGTGACTTTACATTATTGTGGTAATAAAGTACTACAAGTCACCGGAAGTACGAAAAAACATTAAATCTGTGTCAAATTTTTTCAGAAACTCACGCTCTTGGCCTTTCATCGTCCGAATCTTCCAATGGATCCTCTAATTT</canonical>
            <polymorphic>TGAAGTTGTCGTGTTAATATCATTTACAGATTCAGTCATATTCTCAGCCAATTTTTCCAGTAACTCTTCGAGATGATGAACATGTCGGAGTGTTTTCTGAAAAAAAAAAATACATTTTGAAGCAATTAAAAAATGTTCAGACTGGAACTATGCCAGTGTCTGCAAAATATTAAACTCCGTCAGATCTCTGAGTATGCTTCAAGCGAGCCTTAAAACCTTTCATGCTCCCCAAAAAATCTCACTGCTTTTTCATGTCGACTCTCCACGGACCAAAACATTGCAGCACCCAGCAACGTATATAAAAGGACCAAAATTACGACACAAATGTGCCGAAATCCTATTTGCTTCCTATGAAAAGCAAACCAATACATGGATTTATCGAATCGTCGCAGTGTTGGAATCACGGGCTGGCCAAGTGCTCCAGGACTACTGTATCTGCTGATACCATCTCCATGAGTGCTCATTCTATGTTGCAGATGGCTGGGAAGCTTATTGTAGARGTCTCGATCGCGACCTAAAAATGTTTTTCGTTAATTTTGCTTAAAGCCACTGTACCTGTCACGGTATAGTTATTTCTCTCATAATATTTCTCAATCGGGTCTTCTGGATTTCCAACTTTTGTTCCAATCGTCGCGTTTCCACGATCTATGGACGCGTGTCTGGTGTACCTGTGAGTACTAAATTGACTCTTATCCAACTCTGAAACACTGTCTAAGCGATTTCTTTCTTCCAGATCTGCATTGCTGACGCTTACGCTGCGGCTGAAGAAAATAATTTTTGAGGTCAAAGAAAAAAAGCCAAAACATTAATATGTAAGTAACTAAGCACTTGTATTGGATCTAGCCACTAAACAAGTTTTTAGTGACTTTACATTATTGTGGTAATAAAGTACTACAAGTCACCGGAAGTACGAAAAAACATTAAATCTGTGTCAAATTTTTTCAGAAACTCACGCTCTTGGCCTTTCATCGTCCGAATCTTCCAATGGATCCTCTAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATGAAAAGCAAACCAATACAT</pcr_primer_p1>
		<pcr_primer_p2>CCGATTGAGAAATATTATGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATGAAAAGCAAACCAATACATGGATTTATCGAATCGTCGCAGTGTTGGAATCACGGGCTGGCCAAGTGCTCCAGGACTACTGTATCTGCTGATACCATCTCCATGAGTGCTCATTCTATGTTGCAGATGGCTGGGAAGCTTATTGTAGAAGTCTCGATCGCGACCTAAAAATGTTTTTCGTTAATTTTGCTTAAAGCCACTGTACCTGTCACGGTATAGTTATTTCTCTCATAATATTTCTCAATCGG</canonical_amplicon>
		<polymorphic_amplicon>CTATGAAAAGCAAACCAATACATGGATTTATCGAATCGTCGCAGTGTTGGAATCACGGGCTGGCCAAGTGCTCCAGGACTACTGTATCTGCTGATACCATCTCCATGAGTGCTCATTCTATGTTGCAGATGGCTGGGAAGCTTATTGTAGARGTCTCGATCGCGACCTAAAAATGTTTTTCGTTAATTTTGCTTAAAGCCACTGTACCTGTCACGGTATAGTTATTTCTCTCATAATATTTCTCAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28368</snp_id>
        <super_contig>c003800591.Contig1</super_contig>
        <contig_pos>58384</contig_pos>
        <strand>+</strand>
        <context>GGAATTCTTG[A/G]AGGGATTAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAGGCGTGACGTATACCGACTTTTCGAGAAGAATTAAATGGAATTCTTG</left_flank>
        <right_flank>AGGGATTAATATATAAAAGGATTACCGTAATCTTAAGAAACAGTAATCGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTATTGCCTTGTTTCTTTTTTCTTTATCTTTGAAAAAAAATCACATCACCAAAAAATAGGATACTTGAAAAATTGTGATCATTTTGACCTTAAAATTGTTTTTATCTAGTTTATTTGCAGGAAAATTCTAGTTTTTTTCTAGAAAATAAATATTTTGGTATGCTAGACTTAAATGCTAGACTTAAAATATTTTGGTATGCTAGACTTAAATTTTGACAAATTTTTCGAACTGCATTACATAAATAATCGAATGTTTGAATATTTTTGTTGAAGAATTACATAACTTGAATAATCCAAAAATCGGAGTACCCTAAACGTTAATCAACCCGGTGTTTTCTATTTTATACACACATTTGTTTGCAAAATCGTGTTACAAGATTAAATTCGGACACAATAGAAATATTCTAAGGGTCAATTTGTAAACACATATTTTTTGGGTTCAGAATTATGAGGCGTGACGTATACCGACTTTTCGAGAAGAATTAAATGGAATTCTTGAAGGGATTAATATATAAAAGGATTACCGTAATCTTAAGAAACAGTAATCGGGTCATATGTCAACATTTCGAGACCTAGTCTTTGGTTCTTTGAAACTTAGACTGTGTAGAAAAATCCGATTTTCTCGTTTTTCGTTTTTGTGACGCTTTGATCTAAATAGTGAGAACGAAAAAAGGAAAAGTTTTGCTAAATATTATCTGACATAGTAAAATAATACCAATGCTTGTGTAATTTTACAATCCTTGTATTATGGTTTTTATTGGAAGAATATCAGCGCGAAGTTGATTATTTCAGTAAAAATTCAAATAAAATGAGTTCCACAAATAGAAATTACAAAACGACATTAAAAAAAAGAATCAACAAAAATAAATAATCGAAATGAATCAAAATAAATTTTGTAAACTTTTCACATTGGAGCAACAGCATGCACATTGGCATGAGTTGAATAACGTTTTGGGAACATTCTCGAAACTTTTGTTCTAATTTTTTTAGTTGTTAGTA</canonical>
            <polymorphic>TTTATTGCCTTGTTTCTTTTTTCTTTATCTTTGAAAAAAAATCACATCACCAAAAAATAGGATACTTGAAAAATTGTGATCATTTTGACCTTAAAATTGTTTTTATCTAGTTTATTTGCAGGAAAATTCTAGTTTTTTTCTAGAAAATAAATATTTTGGTATGCTAGACTTAAATGCTAGACTTAAAATATTTTGGTATGCTAGACTTAAATTTTGACAAATTTTTCGAACTGCATTACATAAATAATCGAATGTTTGAATATTTTTGTTGAAGAATTACATAACTTGAATAATCCAAAAATCGGAGTACCCTAAACGTTAATCAACCCGGTGTTTTCTATTTTATACACACATTTGTTTGCAAAATCGTGTTACAAGATTAAATTCGGACACAATAGAAATATTCTAAGGGTCAATTTGTAAACACATATTTTTTGGGTTCAGAATTATGAGGCGTGACGTATACCGACTTTTCGAGAAGAATTAAATGGAATTCTTGRAGGGATTAATATATAAAAGGATTACCGTAATCTTAAGAAACAGTAATCGGGTCATATGTCAACATTTCGAGACCTAGTCTTTGGTTCTTTGAAACTTAGACTGTGTAGAAAAATCCGATTTTCTCGTTTTTCGTTTTTGTGACGCTTTGATCTAAATAGTGAGAACGAAAAAAGGAAAAGTTTTGCTAAATATTATCTGACATAGTAAAATAATACCAATGCTTGTGTAATTTTACAATCCTTGTATTATGGTTTTTATTGGAAGAATATCAGCGCGAAGTTGATTATTTCAGTAAAAATTCAAATAAAATGAGTTCCACAAATAGAAATTACAAAACGACATTAAAAAAAAGAATCAACAAAAATAAATAATCGAAATGAATCAAAATAAATTTTGTAAACTTTTCACATTGGAGCAACAGCATGCACATTGGCATGAGTTGAATAACGTTTTGGGAACATTCTCGAAACTTTTGTTCTAATTTTTTTAGTTGTTAGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>396 335 140 72 36 21</canonical_bands>
                <polymorphic_bands>396 335 140 93 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTACAAGATTAAATTCGGACAC</pcr_primer_p1>
		<pcr_primer_p2>CGGATTTTTCTACACAGTCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTTACAAGATTAAATTCGGACACAATAGAAATATTCTAAGGGTCAATTTGTAAACACATATTTTTTGGGTTCAGAATTATGAGGCGTGACGTATACCGACTTTTCGAGAAGAATTAAATGGAATTCTTGAAGGGATTAATATATAAAAGGATTACCGTAATCTTAAGAAACAGTAATCGGGTCATATGTCAACATTTCGAGACCTAGTCTTTGGTTCTTTGAAACTTAGACTGTGTAGAAAAATCCG</canonical_amplicon>
		<polymorphic_amplicon>GTTACAAGATTAAATTCGGACACAATAGAAATATTCTAAGGGTCAATTTGTAAACACATATTTTTTGGGTTCAGAATTATGAGGCGTGACGTATACCGACTTTTCGAGAAGAATTAAATGGAATTCTTGRAGGGATTAATATATAAAAGGATTACCGTAATCTTAAGAAACAGTAATCGGGTCATATGTCAACATTTCGAGACCTAGTCTTTGGTTCTTTGAAACTTAGACTGTGTAGAAAAATCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28369</snp_id>
        <super_contig>c003800591.Contig1</super_contig>
        <contig_pos>58532</contig_pos>
        <strand>+</strand>
        <context>TGTGACGCTT[C/T]GATCTAAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGACTGTGTAGAAAAATCCGATTTTCTCGTTTTTCGTTTTTGTGACGCTT</left_flank>
        <right_flank>GATCTAAATAGTGAGAACGAAAAAAGGAAAAGTTTTGCTAAATATTATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATATTTTGGTATGCTAGACTTAAATGCTAGACTTAAAATATTTTGGTATGCTAGACTTAAATTTTGACAAATTTTTCGAACTGCATTACATAAATAATCGAATGTTTGAATATTTTTGTTGAAGAATTACATAACTTGAATAATCCAAAAATCGGAGTACCCTAAACGTTAATCAACCCGGTGTTTTCTATTTTATACACACATTTGTTTGCAAAATCGTGTTACAAGATTAAATTCGGACACAATAGAAATATTCTAAGGGTCAATTTGTAAACACATATTTTTTGGGTTCAGAATTATGAGGCGTGACGTATACCGACTTTTCGAGAAGAATTAAATGGAATTCTTGAAGGGATTAATATATAAAAGGATTACCGTAATCTTAAGAAACAGTAATCGGGTCATATGTCAACATTTCGAGACCTAGTCTTTGGTTCTTTGAAACTTAGACTGTGTAGAAAAATCCGATTTTCTCGTTTTTCGTTTTTGTGACGCTTTGATCTAAATAGTGAGAACGAAAAAAGGAAAAGTTTTGCTAAATATTATCTGACATAGTAAAATAATACCAATGCTTGTGTAATTTTACAATCCTTGTATTATGGTTTTTATTGGAAGAATATCAGCGCGAAGTTGATTATTTCAGTAAAAATTCAAATAAAATGAGTTCCACAAATAGAAATTACAAAACGACATTAAAAAAAAGAATCAACAAAAATAAATAATCGAAATGAATCAAAATAAATTTTGTAAACTTTTCACATTGGAGCAACAGCATGCACATTGGCATGAGTTGAATAACGTTTTGGGAACATTCTCGAAACTTTTGTTCTAATTTTTTTAGTTGTTAGTAGAAGTAATAAAGGTAGACAAATTTCGGGAATGTAATTGAGAACGGAGAAAATTATGACCAGTGGACTATTGTAATTGATGTAGGTTGAAGGTTTGATAATGACAAAAAACTCAGTCCCAACGCAAATGATCTGAAAAATTGGATTTTA</canonical>
            <polymorphic>AAATATTTTGGTATGCTAGACTTAAATGCTAGACTTAAAATATTTTGGTATGCTAGACTTAAATTTTGACAAATTTTTCGAACTGCATTACATAAATAATCGAATGTTTGAATATTTTTGTTGAAGAATTACATAACTTGAATAATCCAAAAATCGGAGTACCCTAAACGTTAATCAACCCGGTGTTTTCTATTTTATACACACATTTGTTTGCAAAATCGTGTTACAAGATTAAATTCGGACACAATAGAAATATTCTAAGGGTCAATTTGTAAACACATATTTTTTGGGTTCAGAATTATGAGGCGTGACGTATACCGACTTTTCGAGAAGAATTAAATGGAATTCTTGAAGGGATTAATATATAAAAGGATTACCGTAATCTTAAGAAACAGTAATCGGGTCATATGTCAACATTTCGAGACCTAGTCTTTGGTTCTTTGAAACTTAGACTGTGTAGAAAAATCCGATTTTCTCGTTTTTCGTTTTTGTGACGCTTYGATCTAAATAGTGAGAACGAAAAAAGGAAAAGTTTTGCTAAATATTATCTGACATAGTAAAATAATACCAATGCTTGTGTAATTTTACAATCCTTGTATTATGGTTTTTATTGGAAGAATATCAGCGCGAAGTTGATTATTTCAGTAAAAATTCAAATAAAATGAGTTCCACAAATAGAAATTACAAAACGACATTAAAAAAAAGAATCAACAAAAATAAATAATCGAAATGAATCAAAATAAATTTTGTAAACTTTTCACATTGGAGCAACAGCATGCACATTGGCATGAGTTGAATAACGTTTTGGGAACATTCTCGAAACTTTTGTTCTAATTTTTTTAGTTGTTAGTAGAAGTAATAAAGGTAGACAAATTTCGGGAATGTAATTGAGAACGGAGAAAATTATGACCAGTGGACTATTGTAATTGATGTAGGTTGAAGGTTTGATAATGACAAAAAACTCAGTCCCAACGCAAATGATCTGAAAAATTGGATTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTTCTTTGAAACTTAGACTG</pcr_primer_p1>
		<pcr_primer_p2>TTTCTATTTGTGGAACTCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGGTTCTTTGAAACTTAGACTGTGTAGAAAAATCCGATTTTCTCGTTTTTCGTTTTTGTGACGCTTTGATCTAAATAGTGAGAACGAAAAAAGGAAAAGTTTTGCTAAATATTATCTGACATAGTAAAATAATACCAATGCTTGTGTAATTTTACAATCCTTGTATTATGGTTTTTATTGGAAGAATATCAGCGCGAAGTTGATTATTTCAGTAAAAATTCAAATAAAATGAGTTCCACAAATAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TTGGTTCTTTGAAACTTAGACTGTGTAGAAAAATCCGATTTTCTCGTTTTTCGTTTTTGTGACGCTTYGATCTAAATAGTGAGAACGAAAAAAGGAAAAGTTTTGCTAAATATTATCTGACATAGTAAAATAATACCAATGCTTGTGTAATTTTACAATCCTTGTATTATGGTTTTTATTGGAAGAATATCAGCGCGAAGTTGATTATTTCAGTAAAAATTCAAATAAAATGAGTTCCACAAATAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28370</snp_id>
        <super_contig>c003800591.Contig1</super_contig>
        <contig_pos>58579</contig_pos>
        <strand>+</strand>
        <context>GCTAAATATT[A/C]TCTGMCATAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTTGATCTAAATAGTGAGAACGAAAAAAGGAAAAGTTTTGCTAAATATT</left_flank>
        <right_flank>TCTGACATAGTAAAATAATACCAATGCTTGTGTAATTTTACAATCCTTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATGCTAGACTTAAATTTTGACAAATTTTTCGAACTGCATTACATAAATAATCGAATGTTTGAATATTTTTGTTGAAGAATTACATAACTTGAATAATCCAAAAATCGGAGTACCCTAAACGTTAATCAACCCGGTGTTTTCTATTTTATACACACATTTGTTTGCAAAATCGTGTTACAAGATTAAATTCGGACACAATAGAAATATTCTAAGGGTCAATTTGTAAACACATATTTTTTGGGTTCAGAATTATGAGGCGTGACGTATACCGACTTTTCGAGAAGAATTAAATGGAATTCTTGAAGGGATTAATATATAAAAGGATTACCGTAATCTTAAGAAACAGTAATCGGGTCATATGTCAACATTTCGAGACCTAGTCTTTGGTTCTTTGAAACTTAGACTGTGTAGAAAAATCCGATTTTCTCGTTTTTCGTTTTTGTGACGCTTTGATCTAAATAGTGAGAACGAAAAAAGGAAAAGTTTTGCTAAATATTATCTGACATAGTAAAATAATACCAATGCTTGTGTAATTTTACAATCCTTGTATTATGGTTTTTATTGGAAGAATATCAGCGCGAAGTTGATTATTTCAGTAAAAATTCAAATAAAATGAGTTCCACAAATAGAAATTACAAAACGACATTAAAAAAAAGAATCAACAAAAATAAATAATCGAAATGAATCAAAATAAATTTTGTAAACTTTTCACATTGGAGCAACAGCATGCACATTGGCATGAGTTGAATAACGTTTTGGGAACATTCTCGAAACTTTTGTTCTAATTTTTTTAGTTGTTAGTAGAAGTAATAAAGGTAGACAAATTTCGGGAATGTAATTGAGAACGGAGAAAATTATGACCAGTGGACTATTGTAATTGATGTAGGTTGAAGGTTTGATAATGACAAAAAACTCAGTCCCAACGCAAATGATCTGAAAAATTGGATTTTAGATTTTGAGATTTTTGAATAAAGCCATTGTTGAATGTAACACTCAAA</canonical>
            <polymorphic>GTATGCTAGACTTAAATTTTGACAAATTTTTCGAACTGCATTACATAAATAATCGAATGTTTGAATATTTTTGTTGAAGAATTACATAACTTGAATAATCCAAAAATCGGAGTACCCTAAACGTTAATCAACCCGGTGTTTTCTATTTTATACACACATTTGTTTGCAAAATCGTGTTACAAGATTAAATTCGGACACAATAGAAATATTCTAAGGGTCAATTTGTAAACACATATTTTTTGGGTTCAGAATTATGAGGCGTGACGTATACCGACTTTTCGAGAAGAATTAAATGGAATTCTTGAAGGGATTAATATATAAAAGGATTACCGTAATCTTAAGAAACAGTAATCGGGTCATATGTCAACATTTCGAGACCTAGTCTTTGGTTCTTTGAAACTTAGACTGTGTAGAAAAATCCGATTTTCTCGTTTTTCGTTTTTGTGACGCTTTGATCTAAATAGTGAGAACGAAAAAAGGAAAAGTTTTGCTAAATATTMTCTGACATAGTAAAATAATACCAATGCTTGTGTAATTTTACAATCCTTGTATTATGGTTTTTATTGGAAGAATATCAGCGCGAAGTTGATTATTTCAGTAAAAATTCAAATAAAATGAGTTCCACAAATAGAAATTACAAAACGACATTAAAAAAAAGAATCAACAAAAATAAATAATCGAAATGAATCAAAATAAATTTTGTAAACTTTTCACATTGGAGCAACAGCATGCACATTGGCATGAGTTGAATAACGTTTTGGGAACATTCTCGAAACTTTTGTTCTAATTTTTTTAGTTGTTAGTAGAAGTAATAAAGGTAGACAAATTTCGGGAATGTAATTGAGAACGGAGAAAATTATGACCAGTGGACTATTGTAATTGATGTAGGTTGAAGGTTTGATAATGACAAAAAACTCAGTCCCAACGCAAATGATCTGAAAAATTGGATTTTAGATTTTGAGATTTTTGAATAAAGCCATTGTTGAATGTAACACTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTTCTTTGAAACTTAGACTG</pcr_primer_p1>
		<pcr_primer_p2>TTTCTATTTGTGGAACTCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGGTTCTTTGAAACTTAGACTGTGTAGAAAAATCCGATTTTCTCGTTTTTCGTTTTTGTGACGCTTTGATCTAAATAGTGAGAACGAAAAAAGGAAAAGTTTTGCTAAATATTATCTGACATAGTAAAATAATACCAATGCTTGTGTAATTTTACAATCCTTGTATTATGGTTTTTATTGGAAGAATATCAGCGCGAAGTTGATTATTTCAGTAAAAATTCAAATAAAATGAGTTCCACAAATAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TTGGTTCTTTGAAACTTAGACTGTGTAGAAAAATCCGATTTTCTCGTTTTTCGTTTTTGTGACGCTTTGATCTAAATAGTGAGAACGAAAAAAGGAAAAGTTTTGCTAAATATTMTCTGACATAGTAAAATAATACCAATGCTTGTGTAATTTTACAATCCTTGTATTATGGTTTTTATTGGAAGAATATCAGCGCGAAGTTGATTATTTCAGTAAAAATTCAAATAAAATGAGTTCCACAAATAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28371</snp_id>
        <super_contig>c003800591.Contig1</super_contig>
        <contig_pos>58584</contig_pos>
        <strand>+</strand>
        <context>ATATTMTCTG[A/C]CATAGTAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCTAAATAGTGAGAACGAAAAAAGGAAAAGTTTTGCTAAATATTATCTG</left_flank>
        <right_flank>CATAGTAAAATAATACCAATGCTTGTGTAATTTTACAATCCTTGTATTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAGACTTAAATTTTGACAAATTTTTCGAACTGCATTACATAAATAATCGAATGTTTGAATATTTTTGTTGAAGAATTACATAACTTGAATAATCCAAAAATCGGAGTACCCTAAACGTTAATCAACCCGGTGTTTTCTATTTTATACACACATTTGTTTGCAAAATCGTGTTACAAGATTAAATTCGGACACAATAGAAATATTCTAAGGGTCAATTTGTAAACACATATTTTTTGGGTTCAGAATTATGAGGCGTGACGTATACCGACTTTTCGAGAAGAATTAAATGGAATTCTTGAAGGGATTAATATATAAAAGGATTACCGTAATCTTAAGAAACAGTAATCGGGTCATATGTCAACATTTCGAGACCTAGTCTTTGGTTCTTTGAAACTTAGACTGTGTAGAAAAATCCGATTTTCTCGTTTTTCGTTTTTGTGACGCTTTGATCTAAATAGTGAGAACGAAAAAAGGAAAAGTTTTGCTAAATATTATCTGACATAGTAAAATAATACCAATGCTTGTGTAATTTTACAATCCTTGTATTATGGTTTTTATTGGAAGAATATCAGCGCGAAGTTGATTATTTCAGTAAAAATTCAAATAAAATGAGTTCCACAAATAGAAATTACAAAACGACATTAAAAAAAAGAATCAACAAAAATAAATAATCGAAATGAATCAAAATAAATTTTGTAAACTTTTCACATTGGAGCAACAGCATGCACATTGGCATGAGTTGAATAACGTTTTGGGAACATTCTCGAAACTTTTGTTCTAATTTTTTTAGTTGTTAGTAGAAGTAATAAAGGTAGACAAATTTCGGGAATGTAATTGAGAACGGAGAAAATTATGACCAGTGGACTATTGTAATTGATGTAGGTTGAAGGTTTGATAATGACAAAAAACTCAGTCCCAACGCAAATGATCTGAAAAATTGGATTTTAGATTTTGAGATTTTTGAATAAAGCCATTGTTGAATGTAACACTCAAATATTT</canonical>
            <polymorphic>CTAGACTTAAATTTTGACAAATTTTTCGAACTGCATTACATAAATAATCGAATGTTTGAATATTTTTGTTGAAGAATTACATAACTTGAATAATCCAAAAATCGGAGTACCCTAAACGTTAATCAACCCGGTGTTTTCTATTTTATACACACATTTGTTTGCAAAATCGTGTTACAAGATTAAATTCGGACACAATAGAAATATTCTAAGGGTCAATTTGTAAACACATATTTTTTGGGTTCAGAATTATGAGGCGTGACGTATACCGACTTTTCGAGAAGAATTAAATGGAATTCTTGAAGGGATTAATATATAAAAGGATTACCGTAATCTTAAGAAACAGTAATCGGGTCATATGTCAACATTTCGAGACCTAGTCTTTGGTTCTTTGAAACTTAGACTGTGTAGAAAAATCCGATTTTCTCGTTTTTCGTTTTTGTGACGCTTTGATCTAAATAGTGAGAACGAAAAAAGGAAAAGTTTTGCTAAATATTATCTGMCATAGTAAAATAATACCAATGCTTGTGTAATTTTACAATCCTTGTATTATGGTTTTTATTGGAAGAATATCAGCGCGAAGTTGATTATTTCAGTAAAAATTCAAATAAAATGAGTTCCACAAATAGAAATTACAAAACGACATTAAAAAAAAGAATCAACAAAAATAAATAATCGAAATGAATCAAAATAAATTTTGTAAACTTTTCACATTGGAGCAACAGCATGCACATTGGCATGAGTTGAATAACGTTTTGGGAACATTCTCGAAACTTTTGTTCTAATTTTTTTAGTTGTTAGTAGAAGTAATAAAGGTAGACAAATTTCGGGAATGTAATTGAGAACGGAGAAAATTATGACCAGTGGACTATTGTAATTGATGTAGGTTGAAGGTTTGATAATGACAAAAAACTCAGTCCCAACGCAAATGATCTGAAAAATTGGATTTTAGATTTTGAGATTTTTGAATAAAGCCATTGTTGAATGTAACACTCAAATATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>434 173 104 84 82 68 55</canonical_bands>
                <polymorphic_bands>516 173 104 84 68 55</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGTTCTTTGAAACTTAGACTG</pcr_primer_p1>
		<pcr_primer_p2>TTTCTATTTGTGGAACTCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGGTTCTTTGAAACTTAGACTGTGTAGAAAAATCCGATTTTCTCGTTTTTCGTTTTTGTGACGCTTTGATCTAAATAGTGAGAACGAAAAAAGGAAAAGTTTTGCTAAATATTATCTGACATAGTAAAATAATACCAATGCTTGTGTAATTTTACAATCCTTGTATTATGGTTTTTATTGGAAGAATATCAGCGCGAAGTTGATTATTTCAGTAAAAATTCAAATAAAATGAGTTCCACAAATAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TTGGTTCTTTGAAACTTAGACTGTGTAGAAAAATCCGATTTTCTCGTTTTTCGTTTTTGTGACGCTTTGATCTAAATAGTGAGAACGAAAAAAGGAAAAGTTTTGCTAAATATTATCTGMCATAGTAAAATAATACCAATGCTTGTGTAATTTTACAATCCTTGTATTATGGTTTTTATTGGAAGAATATCAGCGCGAAGTTGATTATTTCAGTAAAAATTCAAATAAAATGAGTTCCACAAATAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28372</snp_id>
        <super_contig>c003800591.Contig1</super_contig>
        <contig_pos>58859</contig_pos>
        <strand>+</strand>
        <context>TCGAAACTTT[C/T]GTTCTAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCACATTGGCATGAGTTGAATAACGTTTTGGGAACATTCTCGAAACTTT</left_flank>
        <right_flank>GTTCTAATTTTTTTAGTTGTTAGTAGAAGTAATAAAGGTAGACAAATTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAAGAATTAAATGGAATTCTTGAAGGGATTAATATATAAAAGGATTACCGTAATCTTAAGAAACAGTAATCGGGTCATATGTCAACATTTCGAGACCTAGTCTTTGGTTCTTTGAAACTTAGACTGTGTAGAAAAATCCGATTTTCTCGTTTTTCGTTTTTGTGACGCTTTGATCTAAATAGTGAGAACGAAAAAAGGAAAAGTTTTGCTAAATATTATCTGACATAGTAAAATAATACCAATGCTTGTGTAATTTTACAATCCTTGTATTATGGTTTTTATTGGAAGAATATCAGCGCGAAGTTGATTATTTCAGTAAAAATTCAAATAAAATGAGTTCCACAAATAGAAATTACAAAACGACATTAAAAAAAAGAATCAACAAAAATAAATAATCGAAATGAATCAAAATAAATTTTGTAAACTTTTCACATTGGAGCAACAGCATGCACATTGGCATGAGTTGAATAACGTTTTGGGAACATTCTCGAAACTTTTGTTCTAATTTTTTTAGTTGTTAGTAGAAGTAATAAAGGTAGACAAATTTCGGGAATGTAATTGAGAACGGAGAAAATTATGACCAGTGGACTATTGTAATTGATGTAGGTTGAAGGTTTGATAATGACAAAAAACTCAGTCCCAACGCAAATGATCTGAAAAATTGGATTTTAGATTTTGAGATTTTTGAATAAAGCCATTGTTGAATGTAACACTCAAATATTTCCGAGATACAAAGAAAGGCATTATAGCCACCAGTGGCCCGCTGACTGCCCGCTGACTTCAACAAACTCACCCCAATAATTAAACTGGTTAACAACAACTGATAGAATAAGAGTTTCGATCTTTCTTTATCAAATCTAGAGGAAACATTATCCTCTGACATTTTACGAAAGTTAATATAAACAAACATCACCATAAAACAGACCATTGAACCGAATGGAAACATGTAAAAGATGCGATTAATAAGCTGAAAATTTTTGGAACGTTTTTTTCGTTTT</canonical>
            <polymorphic>GAGAAGAATTAAATGGAATTCTTGAAGGGATTAATATATAAAAGGATTACCGTAATCTTAAGAAACAGTAATCGGGTCATATGTCAACATTTCGAGACCTAGTCTTTGGTTCTTTGAAACTTAGACTGTGTAGAAAAATCCGATTTTCTCGTTTTTCGTTTTTGTGACGCTTTGATCTAAATAGTGAGAACGAAAAAAGGAAAAGTTTTGCTAAATATTATCTGACATAGTAAAATAATACCAATGCTTGTGTAATTTTACAATCCTTGTATTATGGTTTTTATTGGAAGAATATCAGCGCGAAGTTGATTATTTCAGTAAAAATTCAAATAAAATGAGTTCCACAAATAGAAATTACAAAACGACATTAAAAAAAAGAATCAACAAAAATAAATAATCGAAATGAATCAAAATAAATTTTGTAAACTTTTCACATTGGAGCAACAGCATGCACATTGGCATGAGTTGAATAACGTTTTGGGAACATTCTCGAAACTTTYGTTCTAATTTTTTTAGTTGTTAGTAGAAGTAATAAAGGTAGACAAATTTCGGGAATGTAATTGAGAACGGAGAAAATTATGACCAGTGGACTATTGTAATTGATGTAGGTTGAAGGTTTGATAATGACAAAAAACTCAGTCCCAACGCAAATGATCTGAAAAATTGGATTTTAGATTTTGAGATTTTTGAATAAAGCCATTGTTGAATGTAACACTCAAATATTTCCGAGATACAAAGAAAGGCATTATAGCCACCAGTGGCCCGCTGACTGCCCGCTGACTTCAACAAACTCACCCCAATAATTAAACTGGTTAACAACAACTGATAGAATAAGAGTTTCGATCTTTCTTTATCAAATCTAGAGGAAACATTATCCTCTGACATTTTACGAAAGTTAATATAAACAAACATCACCATAAAACAGACCATTGAACCGAATGGAAACATGTAAAAGATGCGATTAATAAGCTGAAAATTTTTGGAACGTTTTTTTCGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAATAAAATGAGTTCCACAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCTCCGTTCTCAATTACAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAAATAAAATGAGTTCCACAAATAGAAATTACAAAACGACATTAAAAAAAAGAATCAACAAAAATAAATAATCGAAATGAATCAAAATAAATTTTGTAAACTTTTCACATTGGAGCAACAGCATGCACATTGGCATGAGTTGAATAACGTTTTGGGAACATTCTCGAAACTTTTGTTCTAATTTTTTTAGTTGTTAGTAGAAGTAATAAAGGTAGACAAATTTCGGGAATGTAATTGAGAACGGAGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CAAATAAAATGAGTTCCACAAATAGAAATTACAAAACGACATTAAAAAAAAGAATCAACAAAAATAAATAATCGAAATGAATCAAAATAAATTTTGTAAACTTTTCACATTGGAGCAACAGCATGCACATTGGCATGAGTTGAATAACGTTTTGGGAACATTCTCGAAACTTTYGTTCTAATTTTTTTAGTTGTTAGTAGAAGTAATAAAGGTAGACAAATTTCGGGAATGTAATTGAGAACGGAGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28373</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>7840</contig_pos>
        <strand>+</strand>
        <context>AAAATGCTAT[A/C]ACTTAAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATATTGAAAAATTAAGATAAAACCATATTGTAATTTTAAAAAATGCTAT</left_flank>
        <right_flank>ACTTAAAAATCATCGAAAAACTATCAATTAGTGGAATTAAAACAGTATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGTGAATTTTCGTTGTGATCTTGGGATAAATTTATTTAATTACATGGAAATTATTGATATGATTTCTTCAAAACTAATTTTTTGATATATGATTTTGAAACCTGTCAAACAAATTTGGGGTTTTTCCGAGTTACCGTATTTCTTCTAATAAAGGCCTACCCAACCCTTTAATTTTAAGCTCAATTGTCTCGATTCCTGTGAATGATGTCAAAATTTTAAAAACTGATAAAATATTGGTAAGATCATGATGAATAATTTATCAGTTGACCACTTTTTTATATGTTTTACAGGAATCAAGATAATGGAGCGCAAAGTTGACGGTTTGGGTAGGCTTCTATTAGAAAACACACGGTATCTCTTGTTTTGAATCAAATTTAATTTCATTCCGAACCGTAAAAAATTTGAAATAAAAGAAATATATTCAAGGTCAGAATATGCCATTATAAAAATATTGAAAAATTAAGATAAAACCATATTGTAATTTTAAAAAATGCTATCACTTAAAAATCATCGAAAAACTATCAATTAGTGGAATTAAAACAGTATTAATTTTAGACTATTCTCTTTTTGAAAGTTTTAGGCTTCTTCAAAATTTTTATAGCTTCTGAGAATGCAAAAAAGGTAAACATCATATATGTCGCGGGCCGGGCCGGCCCGGCTCGGGTTTTCGAGGCAAAAATTTTTAAGTGACATTTTTTGAGAGAAAACAGGATTATTGGGAATATTTTATCAAAATTTCTTCGTTTTCAAGTTTAAGAAGGGTCGTGGGATGAATTTCGTGCTTTAAAATGATTATTTTGAAAAAAATGTATCAAAAATTAACAGAAAAATGTTGAACTTTTCGGAACCCGGGCCGGGCCGAAATTTAACAAGTATGGTACAAATTGATCCATAAATGGTGATAAAAAAAACTCAAAATTAGAAGTAAGGACCTCAAGTACCATTCCATAGAGACTGAAACTTGAAAAAACAGATGCCTTTCAGAACTCTTCAAATAG</canonical>
            <polymorphic>TTTGTGAATTTTCGTTGTGATCTTGGGATAAATTTATTTAATTACATGGAAATTATTGATATGATTTCTTCAAAACTAATTTTTTGATATATGATTTTGAAACCTGTCAAACAAATTTGGGGTTTTTCCGAGTTACCGTATTTCTTCTAATAAAGGCCTACCCAACCCTTTAATTTTAAGCTCAATTGTCTCGATTCCTGTGAATGATGTCAAAATTTTAAAAACTGATAAAATATTGGTAAGATCATGATGAATAATTTATCAGTTGACCACTTTTTTATATGTTTTACAGGAATCAAGATAATGGAGCGCAAAGTTGACGGTTTGGGTAGGCTTCTATTAGAAAACACACGGTATCTCTTGTTTTGAATCAAATTTAATTTCATTCCGAACCGTAAAAAATTTGAAATAAAAGAAATATATTCAAGGTCAGAATATGCCATTATAAAAATATTGAAAAATTAAGATAAAACCATATTGTAATTTTAAAAAATGCTATMACTTAAAAATCATCGAAAAACTATCAATTAGTGGAATTAAAACAGTATTAATTTTAGACTATTCTCTTTTTGAAAGTTTTAGGCTTCTTCAAAATTTTTATAGCTTCTGAGAATGCAAAAAAGGTAAACATCATATATGTCGCGGGCCGGGCCGGCCCGGCTCGGGTTTTCGAGGCAAAAATTTTTAAGTGACATTTTTTGAGAGAAAACAGGATTATTGGGAATATTTTATCAAAATTTCTTCGTTTTCAAGTTTAAGAAGGGTCGTGGGATGAATTTCGTGCTTTAAAATGATTATTTTGAAAAAAATGTATCAAAAATTAACAGAAAAATGTTGAACTTTTCGGAACCCGGGCCGGGCCGAAATTTAACAAGTATGGTACAAATTGATCCATAAATGGTGATAAAAAAAACTCAAAATTAGAAGTAAGGACCTCAAGTACCATTCCATAGAGACTGAAACTTGAAAAAACAGATGCCTTTCAGAACTCTTCAAATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>183 158 150 120 97 78 77 70 32 14 13 6 2</canonical_bands>
                <polymorphic_bands>183 182 158 120 97 78 77 70 14 13 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGGTATCTCTTGTTTTGAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTTTGAAGAAGCCTAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACGGTATCTCTTGTTTTGAATCAAATTTAATTTCATTCCGAACCGTAAAAAATTTGAAATAAAAGAAATATATTCAAGGTCAGAATATGCCATTATAAAAATATTGAAAAATTAAGATAAAACCATATTGTAATTTTAAAAAATGCTATCACTTAAAAATCATCGAAAAACTATCAATTAGTGGAATTAAAACAGTATTAATTTTAGACTATTCTCTTTTTGAAAGTTTTAGGCTTCTTCAAAATTTT</canonical_amplicon>
		<polymorphic_amplicon>ACGGTATCTCTTGTTTTGAATCAAATTTAATTTCATTCCGAACCGTAAAAAATTTGAAATAAAAGAAATATATTCAAGGTCAGAATATGCCATTATAAAAATATTGAAAAATTAAGATAAAACCATATTGTAATTTTAAAAAATGCTATMACTTAAAAATCATCGAAAAACTATCAATTAGTGGAATTAAAACAGTATTAATTTTAGACTATTCTCTTTTTGAAAGTTTTAGGCTTCTTCAAAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28374</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>8573</contig_pos>
        <strand>+</strand>
        <context>AAACACTTTA[C/T]TTTTTTCATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTATAACTTGGAAACTCTATAACTTGGCTTTAGAATTGAAACACTTTA</left_flank>
        <right_flank>TTTTTTCATTCTTACACCATCTCCGTATTTAATATAGTGACGGAAATGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTTCTTCGTTTTCAAGTTTAAGAAGGGTCGTGGGATGAATTTCGTGCTTTAAAATGATTATTTTGAAAAAAATGTATCAAAAATTAACAGAAAAATGTTGAACTTTTCGGAACCCGGGCCGGGCCGAAATTTAACAAGTATGGTACAAATTGATCCATAAATGGTGATAAAAAAAACTCAAAATTAGAAGTAAGGACCTCAAGTACCATTCCATAGAGACTGAAACTTGAAAAAACAGATGCCTTTCAGAACTCTTCAAATAGTTGGAAAACTATAAATATTCTGAAACTTTATGAATGCAAATTTTTCAATCTAGGTCTATTTTACACTCTCTACAATTTTCAAACTTGTCGGAAACTTGACAGACGAGCTCCAGATTTTTGAAAATAGACCGAATACCAACTGAAAAATACGGTAGCAACTGGAAAATACGTATATCTTCTTTATCTATAACTTGGAAACTCTATAACTTGGCTTTAGAATTGAAACACTTTATTTTTTTCATTCTTACACCATCTCCGTATTTAATATAGTGACGGAAATGAATTGATTCCGCAAATCGCATTTCTCCCTTCAAGGATCTCTCTTTCATCCCCCACATCTCTCTCTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCACTCTCTCTTCATCCTGACATATTAATTTCATAAATGCCCGACGAAGCGTGGCGACTTACTGTATTATACTAACGCAACAATAGTAATTATAAGCCGACACATACTGTCAGGTAGGGAGGGAAACGTTGCGAACAAAAAGTGGGCATGAAAGGAAGCGAAGAAAAGTTAGAAGAGGTGGAGGGATACGAAAAAAATGGATGATGATGGCGTAAGAGAAACAAGCGAAATCGCGCGAAAGAAACTAGTAACCAGTTGTTTTGATTGTACGTTCAATTTTGTTTGCACGCTACGTTTCCATATAACGCATCGATACGGGGGTAACCGAAAGAGACCAC</canonical>
            <polymorphic>AAAATTTCTTCGTTTTCAAGTTTAAGAAGGGTCGTGGGATGAATTTCGTGCTTTAAAATGATTATTTTGAAAAAAATGTATCAAAAATTAACAGAAAAATGTTGAACTTTTCGGAACCCGGGCCGGGCCGAAATTTAACAAGTATGGTACAAATTGATCCATAAATGGTGATAAAAAAAACTCAAAATTAGAAGTAAGGACCTCAAGTACCATTCCATAGAGACTGAAACTTGAAAAAACAGATGCCTTTCAGAACTCTTCAAATAGTTGGAAAACTATAAATATTCTGAAACTTTATGAATGCAAATTTTTCAATCTAGGTCTATTTTACACTCTCTACAATTTTCAAACTTGTCGGAAACTTGACAGACGAGCTCCAGATTTTTGAAAATAGACCGAATACCAACTGAAAAATACGGTAGCAACTGGAAAATACGTATATCTTCTTTATCTATAACTTGGAAACTCTATAACTTGGCTTTAGAATTGAAACACTTTAYTTTTTTCATTCTTACACCATCTCCGTATTTAATATAGTGACGGAAATGAATTGATTCCGCAAATCGCATTTCTCCCTTCAAGGATCTCTCTTTCATCCCCCACATCTCTCTCTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCACTCTCTCTTCATCCTGACATATTAATTTCATAAATGCCCGACGAAGCGTGGCGACTTACTGTATTATACTAACGCAACAATAGTAATTATAAGCCGACACATACTGTCAGGTAGGGAGGGAAACGTTGCGAACAAAAAGTGGGCATGAAAGGAAGCGAAGAAAAGTTAGAAGAGGTGGAGGGATACGAAAAAAATGGATGATGATGGCGTAAGAGAAACAAGCGAAATCGCGCGAAAGAAACTAGTAACCAGTTGTTTTGATTGTACGTTCAATTTTGTTTGCACGCTACGTTTCCATATAACGCATCGATACGGGGGTAACCGAAAGAGACCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAGTACCATTCCATAGAGACT</pcr_primer_p1>
		<pcr_primer_p2>AATCAATTCATTTCCGTCACT</pcr_primer_p2>
		<pcr_amplicon_size>354</pcr_amplicon_size>
		<canonical_amplicon>TCAAGTACCATTCCATAGAGACTGAAACTTGAAAAAACAGATGCCTTTCAGAACTCTTCAAATAGTTGGAAAACTATAAATATTCTGAAACTTTATGAATGCAAATTTTTCAATCTAGGTCTATTTTACACTCTCTACAATTTTCAAACTTGTCGGAAACTTGACAGACGAGCTCCAGATTTTTGAAAATAGACCGAATACCAACTGAAAAATACGGTAGCAACTGGAAAATACGTATATCTTCTTTATCTATAACTTGGAAACTCTATAACTTGGCTTTAGAATTGAAACACTTTATTTTTTTCATTCTTACACCATCTCCGTATTTAATATAGTGACGGAAATGAATTGATT</canonical_amplicon>
		<polymorphic_amplicon>TCAAGTACCATTCCATAGAGACTGAAACTTGAAAAAACAGATGCCTTTCAGAACTCTTCAAATAGTTGGAAAACTATAAATATTCTGAAACTTTATGAATGCAAATTTTTCAATCTAGGTCTATTTTACACTCTCTACAATTTTCAAACTTGTCGGAAACTTGACAGACGAGCTCCAGATTTTTGAAAATAGACCGAATACCAACTGAAAAATACGGTAGCAACTGGAAAATACGTATATCTTCTTTATCTATAACTTGGAAACTCTATAACTTGGCTTTAGAATTGAAACACTTTAYTTTTTTCATTCTTACACCATCTCCGTATTTAATATAGTGACGGAAATGAATTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28375</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>10984</contig_pos>
        <strand>+</strand>
        <context>GTGGAAAAAA[A/G]SAGAATATAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCATATCTAGAAACTTGCATTGAACCTGCCTATAAGCAGTGGAAAAAA</left_flank>
        <right_flank>CAGAATATAGAGGGAAAGCGACTTGAAAGGGGATCTGCATAATCTCAGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCCCAGCTTTTCCTCGCTTTAAGTTCTCCAGAAAGTTATCCGTATGATAGTTCTCAAAGTTTTCTTGAATTGTTTCCGGTTGTTTTGCTTTCAAACAGATTACTTTTCAAGTTCGTCTTCAACTTCTTCTTCGTCTTCTCCTCCTTTTTAAGAGGAGAAAGACAAATTCGGTTTGAGTTTGAGCCTGAGATTGGGGTTGTTGGTAATTTTTAGAGATTTGAAACGGGAAGTCTTCCTCTTCAGAGCTCGTTCTGTCAAGGCTGATCTGAAAAGAAGGCAAAAACAAATTCATTGGCATCCGAGATGCTGTGAGACGATAACCGGAAACAATTTTCTCCTTGGCCTCTCTACAAATCACGACAATTTGTTTCTCGGGGTGCTATCCTCTTCGTTTTTTGTCTTCTTTCCCTCTTTTGGATATTGCCTTTTCAAAGATATCCTCGCACTCATTCATATCTAGAAACTTGCATTGAACCTGCCTATAAGCAGTGGAAAAAAACAGAATATAGAGGGAAAGCGACTTGAAAGGGGATCTGCATAATCTCAGCGAAATCGCCCTTTATTGAGATTTCAAATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCAACCTTCAACGAAAATCCAATCCCATGAGTTTCAAAACGAGATATGAAATGTTTAGAATAATATAGAAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAA</canonical>
            <polymorphic>ACCCCAGCTTTTCCTCGCTTTAAGTTCTCCAGAAAGTTATCCGTATGATAGTTCTCAAAGTTTTCTTGAATTGTTTCCGGTTGTTTTGCTTTCAAACAGATTACTTTTCAAGTTCGTCTTCAACTTCTTCTTCGTCTTCTCCTCCTTTTTAAGAGGAGAAAGACAAATTCGGTTTGAGTTTGAGCCTGAGATTGGGGTTGTTGGTAATTTTTAGAGATTTGAAACGGGAAGTCTTCCTCTTCAGAGCTCGTTCTGTCAAGGCTGATCTGAAAAGAAGGCAAAAACAAATTCATTGGCATCCGAGATGCTGTGAGACGATAACCGGAAACAATTTTCTCCTTGGCCTCTCTACAAATCACGACAATTTGTTTCTCGGGGTGCTATCCTCTTCGTTTTTTGTCTTCTTTCCCTCTTTTGGATATTGCCTTTTCAAAGATATCCTCGCACTCATTCATATCTAGAAACTTGCATTGAACCTGCCTATAAGCAGTGGAAAAAARCAGAATATAGAGGGAAAGCGACTTGAAAGGGGATCTGCATAATCTCAGCGAAATCGCCCTTTATTGAGATTTCAAATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCAACCTTCAACGAAAATCCAATCCCATGAGTTTCAAAACGAGATATGAAATGTTTAGAATAATATAGAAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTTTTGGATATTGCCTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCATATCTCGTTTTGAAACTCAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTCTTTTGGATATTGCCTTTTCAAAGATATCCTCGCACTCATTCATATCTAGAAACTTGCATTGAACCTGCCTATAAGCAGTGGAAAAAAACAGAATATAGAGGGAAAGCGACTTGAAAGGGGATCTGCATAATCTCAGCGAAATCGCCCTTTATTGAGATTTCAAATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCAACCTTCAACGAAAATCCAATCCCATGAGTTTCAAAACGAGATATGA</canonical_amplicon>
		<polymorphic_amplicon>CTCTTTTGGATATTGCCTTTTCAAAGATATCCTCGCACTCATTCATATCTAGAAACTTGCATTGAACCTGCCTATAAGCAGTGGAAAAAARCAGAATATAGAGGGAAAGCGACTTGAAAGGGGATCTGCATAATCTCAGCGAAATCGCCCTTTATTGAGATTTCAAATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCAACCTTCAACGAAAATCCAATCCCATGAGTTTCAAAACGAGATATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28376</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>11279</contig_pos>
        <strand></strand>
        <context>attccggtcg[G/A]aacatttccg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCG</left_flank>
        <right_flank>AACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCATCCGAGATGCTGTGAGACGATAACCGGAAACAATTTTCTCCTTGGCCTCTCTACAAATCACGACAATTTGTTTCTCGGGGTGCTATCCTCTTCGTTTTTTGTCTTCTTTCCCTCTTTTGGATATTGCCTTTTCAAAGATATCCTCGCACTCATTCATATCTAGAAACTTGCATTGAACCTGCCTATAAGCAGTGGAAAAAAACAGAATATAGAGGGAAAGCGACTTGAAAGGGGATCTGCATAATCTCAGCGAAATCGCCCTTTATTGAGATTTCAAATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCAACCTTCAACGAAAATCCAATCCCATGAGTTTCAAAACGAGATATGAAATGTTTAGAATAATATAGAAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTGTTTATCCTTTTTTTCATCCGAAATTCAGGTCATCAAAATTTAAAATGCTCAATTTAATAGCGTTTTTCAATTTCTTATCGAAAATTTCAGCTAAAAATCCATCAGAGATACCGACAAAAGCGAATGTTGTGAAAATATAAATATATCAATTTGACACCTGTCTTCTCAAAAAATTTTCGCGGC</canonical>
            <polymorphic>GCATCCGAGATGCTGTGAGACGATAACCGGAAACAATTTTCTCCTTGGCCTCTCTACAAATCACGACAATTTGTTTCTCGGGGTGCTATCCTCTTCGTTTTTTGTCTTCTTTCCCTCTTTTGGATATTGCCTTTTCAAAGATATCCTCGCACTCATTCATATCTAGAAACTTGCATTGAACCTGCCTATAAGCAGTGGAAAAAAACAGAATATAGAGGGAAAGCGACTTGAAAGGGGATCTGCATAATCTCAGCGAAATCGCCCTTTATTGAGATTTCAAATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCAACCTTCAACGAAAATCCAATCCCATGAGTTTCAAAACGAGATATGAAATGTTTAGAATAATATAGAAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGRAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTGTTTATCCTTTTTTTCATCCGAAATTCAGGTCATCAAAATTTAAAATGCTCAATTTAATAGCGTTTTTCAATTTCTTATCGAAAATTTCAGCTAAAAATCCATCAGAGATACCGACAAAAGCGAATGTTGTGAAAATATAAATATATCAATTTGACACCTGTCTTCTCAAAAAATTTTCGCGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>412 180 85 79 74 17 15 15 14 13 12 12 12 11 10 9 9 8 7 6</canonical_bands>
                <polymorphic_bands>412 180 85 79 74 27 15 15 14 13 12 12 12 11 9 9 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTTGTCGTAAGAATTTATGC</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAGAGGGAGAAGAACATA</pcr_primer_p2>
		<pcr_amplicon_size>433</pcr_amplicon_size>
		<canonical_amplicon>AAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>AAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGRAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28377</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>11292</contig_pos>
        <strand></strand>
        <context>catttccgaa[T/A]gattttttcg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAA</left_flank>
        <right_flank>GATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGAGACGATAACCGGAAACAATTTTCTCCTTGGCCTCTCTACAAATCACGACAATTTGTTTCTCGGGGTGCTATCCTCTTCGTTTTTTGTCTTCTTTCCCTCTTTTGGATATTGCCTTTTCAAAGATATCCTCGCACTCATTCATATCTAGAAACTTGCATTGAACCTGCCTATAAGCAGTGGAAAAAAACAGAATATAGAGGGAAAGCGACTTGAAAGGGGATCTGCATAATCTCAGCGAAATCGCCCTTTATTGAGATTTCAAATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCAACCTTCAACGAAAATCCAATCCCATGAGTTTCAAAACGAGATATGAAATGTTTAGAATAATATAGAAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTGTTTATCCTTTTTTTCATCCGAAATTCAGGTCATCAAAATTTAAAATGCTCAATTTAATAGCGTTTTTCAATTTCTTATCGAAAATTTCAGCTAAAAATCCATCAGAGATACCGACAAAAGCGAATGTTGTGAAAATATAAATATATCAATTTGACACCTGTCTTCTCAAAAAATTTTCGCGGCAAAATGTGACCAT</canonical>
            <polymorphic>TGTGAGACGATAACCGGAAACAATTTTCTCCTTGGCCTCTCTACAAATCACGACAATTTGTTTCTCGGGGTGCTATCCTCTTCGTTTTTTGTCTTCTTTCCCTCTTTTGGATATTGCCTTTTCAAAGATATCCTCGCACTCATTCATATCTAGAAACTTGCATTGAACCTGCCTATAAGCAGTGGAAAAAAACAGAATATAGAGGGAAAGCGACTTGAAAGGGGATCTGCATAATCTCAGCGAAATCGCCCTTTATTGAGATTTCAAATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCAACCTTCAACGAAAATCCAATCCCATGAGTTTCAAAACGAGATATGAAATGTTTAGAATAATATAGAAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAAWGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTGTTTATCCTTTTTTTCATCCGAAATTCAGGTCATCAAAATTTAAAATGCTCAATTTAATAGCGTTTTTCAATTTCTTATCGAAAATTTCAGCTAAAAATCCATCAGAGATACCGACAAAAGCGAATGTTGTGAAAATATAAATATATCAATTTGACACCTGTCTTCTCAAAAAATTTTCGCGGCAAAATGTGACCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTGTCGTAAGAATTTATGC</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAGAGGGAGAAGAACATA</pcr_primer_p2>
		<pcr_amplicon_size>433</pcr_amplicon_size>
		<canonical_amplicon>AAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>AAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAAWGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28378</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>11318</contig_pos>
        <strand></strand>
        <context>aaattccgac[T/A]graatttttc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGAC</left_flank>
        <right_flank>GAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCCTTGGCCTCTCTACAAATCACGACAATTTGTTTCTCGGGGTGCTATCCTCTTCGTTTTTTGTCTTCTTTCCCTCTTTTGGATATTGCCTTTTCAAAGATATCCTCGCACTCATTCATATCTAGAAACTTGCATTGAACCTGCCTATAAGCAGTGGAAAAAAACAGAATATAGAGGGAAAGCGACTTGAAAGGGGATCTGCATAATCTCAGCGAAATCGCCCTTTATTGAGATTTCAAATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCAACCTTCAACGAAAATCCAATCCCATGAGTTTCAAAACGAGATATGAAATGTTTAGAATAATATAGAAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTGTTTATCCTTTTTTTCATCCGAAATTCAGGTCATCAAAATTTAAAATGCTCAATTTAATAGCGTTTTTCAATTTCTTATCGAAAATTTCAGCTAAAAATCCATCAGAGATACCGACAAAAGCGAATGTTGTGAAAATATAAATATATCAATTTGACACCTGTCTTCTCAAAAAATTTTCGCGGCAAAATGTGACCATTACTTTTTTCTTTTATCAGTGGTTGA</canonical>
            <polymorphic>TCTCCTTGGCCTCTCTACAAATCACGACAATTTGTTTCTCGGGGTGCTATCCTCTTCGTTTTTTGTCTTCTTTCCCTCTTTTGGATATTGCCTTTTCAAAGATATCCTCGCACTCATTCATATCTAGAAACTTGCATTGAACCTGCCTATAAGCAGTGGAAAAAAACAGAATATAGAGGGAAAGCGACTTGAAAGGGGATCTGCATAATCTCAGCGAAATCGCCCTTTATTGAGATTTCAAATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCAACCTTCAACGAAAATCCAATCCCATGAGTTTCAAAACGAGATATGAAATGTTTAGAATAATATAGAAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACWGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTGTTTATCCTTTTTTTCATCCGAAATTCAGGTCATCAAAATTTAAAATGCTCAATTTAATAGCGTTTTTCAATTTCTTATCGAAAATTTCAGCTAAAAATCCATCAGAGATACCGACAAAAGCGAATGTTGTGAAAATATAAATATATCAATTTGACACCTGTCTTCTCAAAAAATTTTCGCGGCAAAATGTGACCATTACTTTTTTCTTTTATCAGTGGTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTGTCGTAAGAATTTATGC</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAGAGGGAGAAGAACATA</pcr_primer_p2>
		<pcr_amplicon_size>433</pcr_amplicon_size>
		<canonical_amplicon>AAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>AAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACWGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28379</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>11320</contig_pos>
        <strand></strand>
        <context>attccgacwg[A/G]aatttttccg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTG</left_flank>
        <right_flank>AATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTTGGCCTCTCTACAAATCACGACAATTTGTTTCTCGGGGTGCTATCCTCTTCGTTTTTTGTCTTCTTTCCCTCTTTTGGATATTGCCTTTTCAAAGATATCCTCGCACTCATTCATATCTAGAAACTTGCATTGAACCTGCCTATAAGCAGTGGAAAAAAACAGAATATAGAGGGAAAGCGACTTGAAAGGGGATCTGCATAATCTCAGCGAAATCGCCCTTTATTGAGATTTCAAATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCAACCTTCAACGAAAATCCAATCCCATGAGTTTCAAAACGAGATATGAAATGTTTAGAATAATATAGAAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTGTTTATCCTTTTTTTCATCCGAAATTCAGGTCATCAAAATTTAAAATGCTCAATTTAATAGCGTTTTTCAATTTCTTATCGAAAATTTCAGCTAAAAATCCATCAGAGATACCGACAAAAGCGAATGTTGTGAAAATATAAATATATCAATTTGACACCTGTCTTCTCAAAAAATTTTCGCGGCAAAATGTGACCATTACTTTTTTCTTTTATCAGTGGTTGAGC</canonical>
            <polymorphic>TCCTTGGCCTCTCTACAAATCACGACAATTTGTTTCTCGGGGTGCTATCCTCTTCGTTTTTTGTCTTCTTTCCCTCTTTTGGATATTGCCTTTTCAAAGATATCCTCGCACTCATTCATATCTAGAAACTTGCATTGAACCTGCCTATAAGCAGTGGAAAAAAACAGAATATAGAGGGAAAGCGACTTGAAAGGGGATCTGCATAATCTCAGCGAAATCGCCCTTTATTGAGATTTCAAATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCAACCTTCAACGAAAATCCAATCCCATGAGTTTCAAAACGAGATATGAAATGTTTAGAATAATATAGAAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGRAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTGTTTATCCTTTTTTTCATCCGAAATTCAGGTCATCAAAATTTAAAATGCTCAATTTAATAGCGTTTTTCAATTTCTTATCGAAAATTTCAGCTAAAAATCCATCAGAGATACCGACAAAAGCGAATGTTGTGAAAATATAAATATATCAATTTGACACCTGTCTTCTCAAAAAATTTTCGCGGCAAAATGTGACCATTACTTTTTTCTTTTATCAGTGGTTGAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>344 108 89 53 47 46 41 31 29 26 26 25 23 17 16 15 14 13 12 9 9 7</canonical_bands>
                <polymorphic_bands>344 108 89 53 47 46 43 41 29 26 26 25 23 17 16 15 14 13 9 9 7</polymorphic_bands>
            </assay>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTTGTCGTAAGAATTTATGC</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAGAGGGAGAAGAACATA</pcr_primer_p2>
		<pcr_amplicon_size>433</pcr_amplicon_size>
		<canonical_amplicon>AAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>AAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGRAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28380</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>11407</contig_pos>
        <strand></strand>
        <context>tcgaacagaa[A/G]taattttggt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAA</left_flank>
        <right_flank>TAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCTTTTCAAAGATATCCTCGCACTCATTCATATCTAGAAACTTGCATTGAACCTGCCTATAAGCAGTGGAAAAAAACAGAATATAGAGGGAAAGCGACTTGAAAGGGGATCTGCATAATCTCAGCGAAATCGCCCTTTATTGAGATTTCAAATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCAACCTTCAACGAAAATCCAATCCCATGAGTTTCAAAACGAGATATGAAATGTTTAGAATAATATAGAAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTGTTTATCCTTTTTTTCATCCGAAATTCAGGTCATCAAAATTTAAAATGCTCAATTTAATAGCGTTTTTCAATTTCTTATCGAAAATTTCAGCTAAAAATCCATCAGAGATACCGACAAAAGCGAATGTTGTGAAAATATAAATATATCAATTTGACACCTGTCTTCTCAAAAAATTTTCGCGGCAAAATGTGACCATTACTTTTTTCTTTTATCAGTGGTTGAGCATCGGCTGTCAAAAATGTTGCTATTTGTTGTTCGATTGACATCACGTTATCACTGCGTTTTACACGTTCTTGCTTCTCTTTTCCTGT</canonical>
            <polymorphic>GCCTTTTCAAAGATATCCTCGCACTCATTCATATCTAGAAACTTGCATTGAACCTGCCTATAAGCAGTGGAAAAAAACAGAATATAGAGGGAAAGCGACTTGAAAGGGGATCTGCATAATCTCAGCGAAATCGCCCTTTATTGAGATTTCAAATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCAACCTTCAACGAAAATCCAATCCCATGAGTTTCAAAACGAGATATGAAATGTTTAGAATAATATAGAAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAARTAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTGTTTATCCTTTTTTTCATCCGAAATTCAGGTCATCAAAATTTAAAATGCTCAATTTAATAGCGTTTTTCAATTTCTTATCGAAAATTTCAGCTAAAAATCCATCAGAGATACCGACAAAAGCGAATGTTGTGAAAATATAAATATATCAATTTGACACCTGTCTTCTCAAAAAATTTTCGCGGCAAAATGTGACCATTACTTTTTTCTTTTATCAGTGGTTGAGCATCGGCTGTCAAAAATGTTGCTATTTGTTGTTCGATTGACATCACGTTATCACTGCGTTTTACACGTTCTTGCTTCTCTTTTCCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTGTCGTAAGAATTTATGC</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAGAGGGAGAAGAACATA</pcr_primer_p2>
		<pcr_amplicon_size>433</pcr_amplicon_size>
		<canonical_amplicon>AAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>AAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAARTAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28381</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>11482</contig_pos>
        <strand></strand>
        <context>ttgtgatggg[A/T]aaatgaaatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGG</left_flank>
        <right_flank>AAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAGAATATAGAGGGAAAGCGACTTGAAAGGGGATCTGCATAATCTCAGCGAAATCGCCCTTTATTGAGATTTCAAATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCAACCTTCAACGAAAATCCAATCCCATGAGTTTCAAAACGAGATATGAAATGTTTAGAATAATATAGAAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTGTTTATCCTTTTTTTCATCCGAAATTCAGGTCATCAAAATTTAAAATGCTCAATTTAATAGCGTTTTTCAATTTCTTATCGAAAATTTCAGCTAAAAATCCATCAGAGATACCGACAAAAGCGAATGTTGTGAAAATATAAATATATCAATTTGACACCTGTCTTCTCAAAAAATTTTCGCGGCAAAATGTGACCATTACTTTTTTCTTTTATCAGTGGTTGAGCATCGGCTGTCAAAAATGTTGCTATTTGTTGTTCGATTGACATCACGTTATCACTGCGTTTTACACGTTCTTGCTTCTCTTTTCCTGTCTTTTCTAGCTTATTTTTTTTGTTTCTTAAATGTGGGTTTCATCTGTTTTCAAGTTTTGAAAAAGCGAAAAACAG</canonical>
            <polymorphic>AACAGAATATAGAGGGAAAGCGACTTGAAAGGGGATCTGCATAATCTCAGCGAAATCGCCCTTTATTGAGATTTCAAATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCAACCTTCAACGAAAATCCAATCCCATGAGTTTCAAAACGAGATATGAAATGTTTAGAATAATATAGAAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGWAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTGTTTATCCTTTTTTTCATCCGAAATTCAGGTCATCAAAATTTAAAATGCTCAATTTAATAGCGTTTTTCAATTTCTTATCGAAAATTTCAGCTAAAAATCCATCAGAGATACCGACAAAAGCGAATGTTGTGAAAATATAAATATATCAATTTGACACCTGTCTTCTCAAAAAATTTTCGCGGCAAAATGTGACCATTACTTTTTTCTTTTATCAGTGGTTGAGCATCGGCTGTCAAAAATGTTGCTATTTGTTGTTCGATTGACATCACGTTATCACTGCGTTTTACACGTTCTTGCTTCTCTTTTCCTGTCTTTTCTAGCTTATTTTTTTTGTTTCTTAAATGTGGGTTTCATCTGTTTTCAAGTTTTGAAAAAGCGAAAAACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTGTCGTAAGAATTTATGC</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAGAGGGAGAAGAACATA</pcr_primer_p2>
		<pcr_amplicon_size>433</pcr_amplicon_size>
		<canonical_amplicon>AAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>AAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGWAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28382</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>11509</contig_pos>
        <strand></strand>
        <context>gtaaaattcg[C/A]attttgaaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCG</left_flank>
        <right_flank>ATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGGGGATCTGCATAATCTCAGCGAAATCGCCCTTTATTGAGATTTCAAATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCAACCTTCAACGAAAATCCAATCCCATGAGTTTCAAAACGAGATATGAAATGTTTAGAATAATATAGAAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTGTTTATCCTTTTTTTCATCCGAAATTCAGGTCATCAAAATTTAAAATGCTCAATTTAATAGCGTTTTTCAATTTCTTATCGAAAATTTCAGCTAAAAATCCATCAGAGATACCGACAAAAGCGAATGTTGTGAAAATATAAATATATCAATTTGACACCTGTCTTCTCAAAAAATTTTCGCGGCAAAATGTGACCATTACTTTTTTCTTTTATCAGTGGTTGAGCATCGGCTGTCAAAAATGTTGCTATTTGTTGTTCGATTGACATCACGTTATCACTGCGTTTTACACGTTCTTGCTTCTCTTTTCCTGTCTTTTCTAGCTTATTTTTTTTGTTTCTTAAATGTGGGTTTCATCTGTTTTCAAGTTTTGAAAAAGCGAAAAACAGCAGAGAAACACAATGCCATGACTAACG</canonical>
            <polymorphic>AAAGGGGATCTGCATAATCTCAGCGAAATCGCCCTTTATTGAGATTTCAAATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCAACCTTCAACGAAAATCCAATCCCATGAGTTTCAAAACGAGATATGAAATGTTTAGAATAATATAGAAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGMATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTGTTTATCCTTTTTTTCATCCGAAATTCAGGTCATCAAAATTTAAAATGCTCAATTTAATAGCGTTTTTCAATTTCTTATCGAAAATTTCAGCTAAAAATCCATCAGAGATACCGACAAAAGCGAATGTTGTGAAAATATAAATATATCAATTTGACACCTGTCTTCTCAAAAAATTTTCGCGGCAAAATGTGACCATTACTTTTTTCTTTTATCAGTGGTTGAGCATCGGCTGTCAAAAATGTTGCTATTTGTTGTTCGATTGACATCACGTTATCACTGCGTTTTACACGTTCTTGCTTCTCTTTTCCTGTCTTTTCTAGCTTATTTTTTTTGTTTCTTAAATGTGGGTTTCATCTGTTTTCAAGTTTTGAAAAAGCGAAAAACAGCAGAGAAACACAATGCCATGACTAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTGTCGTAAGAATTTATGC</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAGAGGGAGAAGAACATA</pcr_primer_p2>
		<pcr_amplicon_size>433</pcr_amplicon_size>
		<canonical_amplicon>AAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>AAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGMATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28383</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>11550</contig_pos>
        <strand></strand>
        <context>ccgaaaattt[T/A]raaatcggra</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTT</left_flank>
        <right_flank>GAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTGTTTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATTTCAAATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCAACCTTCAACGAAAATCCAATCCCATGAGTTTCAAAACGAGATATGAAATGTTTAGAATAATATAGAAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTGTTTATCCTTTTTTTCATCCGAAATTCAGGTCATCAAAATTTAAAATGCTCAATTTAATAGCGTTTTTCAATTTCTTATCGAAAATTTCAGCTAAAAATCCATCAGAGATACCGACAAAAGCGAATGTTGTGAAAATATAAATATATCAATTTGACACCTGTCTTCTCAAAAAATTTTCGCGGCAAAATGTGACCATTACTTTTTTCTTTTATCAGTGGTTGAGCATCGGCTGTCAAAAATGTTGCTATTTGTTGTTCGATTGACATCACGTTATCACTGCGTTTTACACGTTCTTGCTTCTCTTTTCCTGTCTTTTCTAGCTTATTTTTTTTGTTTCTTAAATGTGGGTTTCATCTGTTTTCAAGTTTTGAAAAAGCGAAAAACAGCAGAGAAACACAATGCCATGACTAACGAGCAATTAGATTCGTGGGAACGTTTCTCAGAGCTCCCCAGA</canonical>
            <polymorphic>AGATTTCAAATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCAACCTTCAACGAAAATCCAATCCCATGAGTTTCAAAACGAGATATGAAATGTTTAGAATAATATAGAAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTWGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTGTTTATCCTTTTTTTCATCCGAAATTCAGGTCATCAAAATTTAAAATGCTCAATTTAATAGCGTTTTTCAATTTCTTATCGAAAATTTCAGCTAAAAATCCATCAGAGATACCGACAAAAGCGAATGTTGTGAAAATATAAATATATCAATTTGACACCTGTCTTCTCAAAAAATTTTCGCGGCAAAATGTGACCATTACTTTTTTCTTTTATCAGTGGTTGAGCATCGGCTGTCAAAAATGTTGCTATTTGTTGTTCGATTGACATCACGTTATCACTGCGTTTTACACGTTCTTGCTTCTCTTTTCCTGTCTTTTCTAGCTTATTTTTTTTGTTTCTTAAATGTGGGTTTCATCTGTTTTCAAGTTTTGAAAAAGCGAAAAACAGCAGAGAAACACAATGCCATGACTAACGAGCAATTAGATTCGTGGGAACGTTTCTCAGAGCTCCCCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTGTCGTAAGAATTTATGC</pcr_primer_p1>
		<pcr_primer_p2>GGATAAACAAGAAGAGGGAGA</pcr_primer_p2>
		<pcr_amplicon_size>440</pcr_amplicon_size>
		<canonical_amplicon>AAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTGTTTATCC</canonical_amplicon>
		<polymorphic_amplicon>AAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTWGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTGTTTATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28384</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>11551</contig_pos>
        <strand></strand>
        <context>cgaaaatttw[G/A]aaatcggrat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTT</left_flank>
        <right_flank>AAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTGTTTAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTCAAATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCAACCTTCAACGAAAATCCAATCCCATGAGTTTCAAAACGAGATATGAAATGTTTAGAATAATATAGAAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTGTTTATCCTTTTTTTCATCCGAAATTCAGGTCATCAAAATTTAAAATGCTCAATTTAATAGCGTTTTTCAATTTCTTATCGAAAATTTCAGCTAAAAATCCATCAGAGATACCGACAAAAGCGAATGTTGTGAAAATATAAATATATCAATTTGACACCTGTCTTCTCAAAAAATTTTCGCGGCAAAATGTGACCATTACTTTTTTCTTTTATCAGTGGTTGAGCATCGGCTGTCAAAAATGTTGCTATTTGTTGTTCGATTGACATCACGTTATCACTGCGTTTTACACGTTCTTGCTTCTCTTTTCCTGTCTTTTCTAGCTTATTTTTTTTGTTTCTTAAATGTGGGTTTCATCTGTTTTCAAGTTTTGAAAAAGCGAAAAACAGCAGAGAAACACAATGCCATGACTAACGAGCAATTAGATTCGTGGGAACGTTTCTCAGAGCTCCCCAGAA</canonical>
            <polymorphic>GATTTCAAATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCAACCTTCAACGAAAATCCAATCCCATGAGTTTCAAAACGAGATATGAAATGTTTAGAATAATATAGAAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTRAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTGTTTATCCTTTTTTTCATCCGAAATTCAGGTCATCAAAATTTAAAATGCTCAATTTAATAGCGTTTTTCAATTTCTTATCGAAAATTTCAGCTAAAAATCCATCAGAGATACCGACAAAAGCGAATGTTGTGAAAATATAAATATATCAATTTGACACCTGTCTTCTCAAAAAATTTTCGCGGCAAAATGTGACCATTACTTTTTTCTTTTATCAGTGGTTGAGCATCGGCTGTCAAAAATGTTGCTATTTGTTGTTCGATTGACATCACGTTATCACTGCGTTTTACACGTTCTTGCTTCTCTTTTCCTGTCTTTTCTAGCTTATTTTTTTTGTTTCTTAAATGTGGGTTTCATCTGTTTTCAAGTTTTGAAAAAGCGAAAAACAGCAGAGAAACACAATGCCATGACTAACGAGCAATTAGATTCGTGGGAACGTTTCTCAGAGCTCCCCAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTGTCGTAAGAATTTATGC</pcr_primer_p1>
		<pcr_primer_p2>GGATAAACAAGAAGAGGGAGA</pcr_primer_p2>
		<pcr_amplicon_size>440</pcr_amplicon_size>
		<canonical_amplicon>AAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTGTTTATCC</canonical_amplicon>
		<polymorphic_amplicon>AAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTRAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTGTTTATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28385</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>11559</contig_pos>
        <strand></strand>
        <context>twraaatcgg[G/A]atattccCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGG</left_flank>
        <right_flank>ATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTGTTTATCCTTTTTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCAACCTTCAACGAAAATCCAATCCCATGAGTTTCAAAACGAGATATGAAATGTTTAGAATAATATAGAAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTGTTTATCCTTTTTTTCATCCGAAATTCAGGTCATCAAAATTTAAAATGCTCAATTTAATAGCGTTTTTCAATTTCTTATCGAAAATTTCAGCTAAAAATCCATCAGAGATACCGACAAAAGCGAATGTTGTGAAAATATAAATATATCAATTTGACACCTGTCTTCTCAAAAAATTTTCGCGGCAAAATGTGACCATTACTTTTTTCTTTTATCAGTGGTTGAGCATCGGCTGTCAAAAATGTTGCTATTTGTTGTTCGATTGACATCACGTTATCACTGCGTTTTACACGTTCTTGCTTCTCTTTTCCTGTCTTTTCTAGCTTATTTTTTTTGTTTCTTAAATGTGGGTTTCATCTGTTTTCAAGTTTTGAAAAAGCGAAAAACAGCAGAGAAACACAATGCCATGACTAACGAGCAATTAGATTCGTGGGAACGTTTCTCAGAGCTCCCCAGAATTTGAAGA</canonical>
            <polymorphic>ATTACTCTTTCCTTTCTAATCTAGTTTCGTGATCTATCAACCTTCAACGAAAATCCAATCCCATGAGTTTCAAAACGAGATATGAAATGTTTAGAATAATATAGAAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGRATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTGTTTATCCTTTTTTTCATCCGAAATTCAGGTCATCAAAATTTAAAATGCTCAATTTAATAGCGTTTTTCAATTTCTTATCGAAAATTTCAGCTAAAAATCCATCAGAGATACCGACAAAAGCGAATGTTGTGAAAATATAAATATATCAATTTGACACCTGTCTTCTCAAAAAATTTTCGCGGCAAAATGTGACCATTACTTTTTTCTTTTATCAGTGGTTGAGCATCGGCTGTCAAAAATGTTGCTATTTGTTGTTCGATTGACATCACGTTATCACTGCGTTTTACACGTTCTTGCTTCTCTTTTCCTGTCTTTTCTAGCTTATTTTTTTTGTTTCTTAAATGTGGGTTTCATCTGTTTTCAAGTTTTGAAAAAGCGAAAAACAGCAGAGAAACACAATGCCATGACTAACGAGCAATTAGATTCGTGGGAACGTTTCTCAGAGCTCCCCAGAATTTGAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>503 309 160 28</canonical_bands>
                <polymorphic_bands>663 309 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTTGTCGTAAGAATTTATGC</pcr_primer_p1>
		<pcr_primer_p2>TTTTAAATTTTGATGACCTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>478</pcr_amplicon_size>
		<canonical_amplicon>AAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGGATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTGTTTATCCTTTTTTTCATCCGAAATTCAGGTCATCAAAATTTAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAATTTGTCGTAAGAATTTATGCAGGGATGTTCGGAACGGAATTCGGAATTCCGAAAATTCCGACCATTTTCGGAATGAAATTCCGAGAAAAAAATCGGAATGAAATTCCGGTCGGAACATTTCCGAATGATTTTTTCGGAATGAAATTCCGACTGAAATTTTTCCGAAGCATTTTTTTCGGAATTAAAATTTTTTCGAGTACAGTATGCCAGGAAAAATTTACCTGCGGGTCTCGAACAGAAATAATTTTGGTTTTTTTTTGCGCTGTCAAAATCTTACTGTCAATTTTCGAAAGATTCTTGCGTCTTTGTGATGGGAAAATGAAATTTCTGCTGTAAAATTCGCATTTTGAAAAATTCCGAAACTTCCGAAATTCCGAAAATTTTGAAATCGGRATATTCCCTGGAATTTATGTTCTTCTCCCTCTTCTTGTTTATCCTTTTTTTCATCCGAAATTCAGGTCATCAAAATTTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28386</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>14835</contig_pos>
        <strand>+</strand>
        <context>GTCATTTTTT[A/T]AAATTTACGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATGTTGCGGTTCTCCTCGGAAAAGGACAGGAATGTTTTGGTCATTTTTT</left_flank>
        <right_flank>AAATTTACGAATTTCCGTTTAATTTTGGCTATTTTTGAAAATTCCTTATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATGACCTTCTTCTTCTTTTCCGTTCGAACAAAAAAAGAAAAATATTATATTGTTTGAATCTACACGGTTACCAACACCCGCTTTTATTTCCTTTCTCGTCAACGATACCAAAATATTATGACCATTTTCGTATTTCCCTTTTTTCCTACTTCTCGTTTTTCGACTCCACAACAGAAAAATAGAACTGAGAATAGAATCAAATACAACTAGTCATCTTGTCTTCAAAAGTCCGGACGCATCGCGTTGTTCTTCTTCTTCCCTCTAATCCGTATTATTCGCGTGGAGCATTTTCTGAGATTTCTTATGAATTATTCAAGAACTTTTTTTCGGATTCGCAACATAGTTGTGTGGCGAGCGGGGTACGGAAGTAGGCTAATTGATACACTGAGACTTGGCTACTTATATGGTGCAAAACAACGATGCTAAGTTAGCCGCTATTAACTGGAAAATGTTGCGGTTCTCCTCGGAAAAGGACAGGAATGTTTTGGTCATTTTTTTAAATTTACGAATTTCCGTTTAATTTTGGCTATTTTTGAAAATTCCTTATTCAATTTTTTGAAGTTATAGATGTTTCATACCATATTTTGCTAAAATCAATTCTTAAAGGTTTTAGATTCCCCAACCTCAAATCTTAGTGATTAAGTTTCTAATCATGCTACAGAATCCAAATTCAATCCAGACAGGTTTTTCTCGCCCACATAACAAAAACGCCTTGAATGGACTGGCAGGTGCTTAAATAGCGCCATTTGCCTGCAGAACTTCATACATCATTTGAAACTAGATCCCAAAATACGAAAATAAAACGCTCATAGGTTTTTAAAAGCTATTGGGTTGGATAACCTTTTGAATTGAGGGTGGATGTTGATCATTTGATATAGAATTAAAAGTTCGAGGCATTTATTTGAGGCTATTTAATTATTCCAATTATTTCTCCATTTTCGTAGTTTCGAGCCACTTAAATTTTATTGCTTTTTTTCTGTGCGAATTTGAGAATTTTC</canonical>
            <polymorphic>TGATGACCTTCTTCTTCTTTTCCGTTCGAACAAAAAAAGAAAAATATTATATTGTTTGAATCTACACGGTTACCAACACCCGCTTTTATTTCCTTTCTCGTCAACGATACCAAAATATTATGACCATTTTCGTATTTCCCTTTTTTCCTACTTCTCGTTTTTCGACTCCACAACAGAAAAATAGAACTGAGAATAGAATCAAATACAACTAGTCATCTTGTCTTCAAAAGTCCGGACGCATCGCGTTGTTCTTCTTCTTCCCTCTAATCCGTATTATTCGCGTGGAGCATTTTCTGAGATTTCTTATGAATTATTCAAGAACTTTTTTTCGGATTCGCAACATAGTTGTGTGGCGAGCGGGGTACGGAAGTAGGCTAATTGATACACTGAGACTTGGCTACTTATATGGTGCAAAACAACGATGCTAAGTTAGCCGCTATTAACTGGAAAATGTTGCGGTTCTCCTCGGAAAAGGACAGGAATGTTTTGGTCATTTTTTWAAATTTACGAATTTCCGTTTAATTTTGGCTATTTTTGAAAATTCCTTATTCAATTTTTTGAAGTTATAGATGTTTCATACCATATTTTGCTAAAATCAATTCTTAAAGGTTTTAGATTCCCCAACCTCAAATCTTAGTGATTAAGTTTCTAATCATGCTACAGAATCCAAATTCAATCCAGACAGGTTTTTCTCGCCCACATAACAAAAACGCCTTGAATGGACTGGCAGGTGCTTAAATAGCGCCATTTGCCTGCAGAACTTCATACATCATTTGAAACTAGATCCCAAAATACGAAAATAAAACGCTCATAGGTTTTTAAAAGCTATTGGGTTGGATAACCTTTTGAATTGAGGGTGGATGTTGATCATTTGATATAGAATTAAAAGTTCGAGGCATTTATTTGAGGCTATTTAATTATTCCAATTATTTCTCCATTTTCGTAGTTTCGAGCCACTTAAATTTTATTGCTTTTTTTCTGTGCGAATTTGAGAATTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 320 180</canonical_bands>
                <polymorphic_bands>820 180</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>440 94 84 84 64 59 44 42 38 31 20</canonical_bands>
                <polymorphic_bands>440 94 84 84 79 64 44 42 38 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTACGGAAGTAGGCTAATTGATA</pcr_primer_p1>
		<pcr_primer_p2>ACCTTTAAGAATTGATTTTAGCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTACGGAAGTAGGCTAATTGATACACTGAGACTTGGCTACTTATATGGTGCAAAACAACGATGCTAAGTTAGCCGCTATTAACTGGAAAATGTTGCGGTTCTCCTCGGAAAAGGACAGGAATGTTTTGGTCATTTTTTTAAATTTACGAATTTCCGTTTAATTTTGGCTATTTTTGAAAATTCCTTATTCAATTTTTTGAAGTTATAGATGTTTCATACCATATTTTGCTAAAATCAATTCTTAAAGGT</canonical_amplicon>
		<polymorphic_amplicon>GTACGGAAGTAGGCTAATTGATACACTGAGACTTGGCTACTTATATGGTGCAAAACAACGATGCTAAGTTAGCCGCTATTAACTGGAAAATGTTGCGGTTCTCCTCGGAAAAGGACAGGAATGTTTTGGTCATTTTTTWAAATTTACGAATTTCCGTTTAATTTTGGCTATTTTTGAAAATTCCTTATTCAATTTTTTGAAGTTATAGATGTTTCATACCATATTTTGCTAAAATCAATTCTTAAAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28387</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>14989</contig_pos>
        <strand>+</strand>
        <context>AGTTTCTAAT[C/T]ATGCTACAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAGGTTTTAGATTCCCCAACCTCAAATCTTAGTGATTAAGTTTCTAAT</left_flank>
        <right_flank>ATGCTACAGAATCCAAATTCAATCCAGACAGGTTTTTCTCGCCCACATAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGTTTTTCGACTCCACAACAGAAAAATAGAACTGAGAATAGAATCAAATACAACTAGTCATCTTGTCTTCAAAAGTCCGGACGCATCGCGTTGTTCTTCTTCTTCCCTCTAATCCGTATTATTCGCGTGGAGCATTTTCTGAGATTTCTTATGAATTATTCAAGAACTTTTTTTCGGATTCGCAACATAGTTGTGTGGCGAGCGGGGTACGGAAGTAGGCTAATTGATACACTGAGACTTGGCTACTTATATGGTGCAAAACAACGATGCTAAGTTAGCCGCTATTAACTGGAAAATGTTGCGGTTCTCCTCGGAAAAGGACAGGAATGTTTTGGTCATTTTTTTAAATTTACGAATTTCCGTTTAATTTTGGCTATTTTTGAAAATTCCTTATTCAATTTTTTGAAGTTATAGATGTTTCATACCATATTTTGCTAAAATCAATTCTTAAAGGTTTTAGATTCCCCAACCTCAAATCTTAGTGATTAAGTTTCTAATCATGCTACAGAATCCAAATTCAATCCAGACAGGTTTTTCTCGCCCACATAACAAAAACGCCTTGAATGGACTGGCAGGTGCTTAAATAGCGCCATTTGCCTGCAGAACTTCATACATCATTTGAAACTAGATCCCAAAATACGAAAATAAAACGCTCATAGGTTTTTAAAAGCTATTGGGTTGGATAACCTTTTGAATTGAGGGTGGATGTTGATCATTTGATATAGAATTAAAAGTTCGAGGCATTTATTTGAGGCTATTTAATTATTCCAATTATTTCTCCATTTTCGTAGTTTCGAGCCACTTAAATTTTATTGCTTTTTTTCTGTGCGAATTTGAGAATTTTCAGACATATGATCACTAAAAACCAAGATAGTTTTTAAAACTTTTAATCACAAGTTTCTGTCTTCTTGTTTTGAAAAAAGGAAGACGTTGTTGTGTGATATCATTTTCAATGGCGATGAAACAAAACTTTTTCAAAACAATGTTTTGTACGATTTC</canonical>
            <polymorphic>TCGTTTTTCGACTCCACAACAGAAAAATAGAACTGAGAATAGAATCAAATACAACTAGTCATCTTGTCTTCAAAAGTCCGGACGCATCGCGTTGTTCTTCTTCTTCCCTCTAATCCGTATTATTCGCGTGGAGCATTTTCTGAGATTTCTTATGAATTATTCAAGAACTTTTTTTCGGATTCGCAACATAGTTGTGTGGCGAGCGGGGTACGGAAGTAGGCTAATTGATACACTGAGACTTGGCTACTTATATGGTGCAAAACAACGATGCTAAGTTAGCCGCTATTAACTGGAAAATGTTGCGGTTCTCCTCGGAAAAGGACAGGAATGTTTTGGTCATTTTTTTAAATTTACGAATTTCCGTTTAATTTTGGCTATTTTTGAAAATTCCTTATTCAATTTTTTGAAGTTATAGATGTTTCATACCATATTTTGCTAAAATCAATTCTTAAAGGTTTTAGATTCCCCAACCTCAAATCTTAGTGATTAAGTTTCTAATYATGCTACAGAATCCAAATTCAATCCAGACAGGTTTTTCTCGCCCACATAACAAAAACGCCTTGAATGGACTGGCAGGTGCTTAAATAGCGCCATTTGCCTGCAGAACTTCATACATCATTTGAAACTAGATCCCAAAATACGAAAATAAAACGCTCATAGGTTTTTAAAAGCTATTGGGTTGGATAACCTTTTGAATTGAGGGTGGATGTTGATCATTTGATATAGAATTAAAAGTTCGAGGCATTTATTTGAGGCTATTTAATTATTCCAATTATTTCTCCATTTTCGTAGTTTCGAGCCACTTAAATTTTATTGCTTTTTTTCTGTGCGAATTTGAGAATTTTCAGACATATGATCACTAAAAACCAAGATAGTTTTTAAAACTTTTAATCACAAGTTTCTGTCTTCTTGTTTTGAAAAAAGGAAGACGTTGTTGTGTGATATCATTTTCAATGGCGATGAAACAAAACTTTTTCAAAACAATGTTTTGTACGATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCTATTTTTGAAAATTCCTTAT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAATGATGTATGAAGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGCTATTTTTGAAAATTCCTTATTCAATTTTTTGAAGTTATAGATGTTTCATACCATATTTTGCTAAAATCAATTCTTAAAGGTTTTAGATTCCCCAACCTCAAATCTTAGTGATTAAGTTTCTAATCATGCTACAGAATCCAAATTCAATCCAGACAGGTTTTTCTCGCCCACATAACAAAAACGCCTTGAATGGACTGGCAGGTGCTTAAATAGCGCCATTTGCCTGCAGAACTTCATACATCATTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GGCTATTTTTGAAAATTCCTTATTCAATTTTTTGAAGTTATAGATGTTTCATACCATATTTTGCTAAAATCAATTCTTAAAGGTTTTAGATTCCCCAACCTCAAATCTTAGTGATTAAGTTTCTAATYATGCTACAGAATCCAAATTCAATCCAGACAGGTTTTTCTCGCCCACATAACAAAAACGCCTTGAATGGACTGGCAGGTGCTTAAATAGCGCCATTTGCCTGCAGAACTTCATACATCATTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28388</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>15005</contig_pos>
        <strand>+</strand>
        <context>ACAGAATCCA[A/G]WTTCAATCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCAACCTCAAATCTTAGTGATTAAGTTTCTAATCATGCTACAGAATCCA</left_flank>
        <right_flank>ATTCAATCCAGACAGGTTTTTCTCGCCCACATAACAAAAACGCCTTGAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACAGAAAAATAGAACTGAGAATAGAATCAAATACAACTAGTCATCTTGTCTTCAAAAGTCCGGACGCATCGCGTTGTTCTTCTTCTTCCCTCTAATCCGTATTATTCGCGTGGAGCATTTTCTGAGATTTCTTATGAATTATTCAAGAACTTTTTTTCGGATTCGCAACATAGTTGTGTGGCGAGCGGGGTACGGAAGTAGGCTAATTGATACACTGAGACTTGGCTACTTATATGGTGCAAAACAACGATGCTAAGTTAGCCGCTATTAACTGGAAAATGTTGCGGTTCTCCTCGGAAAAGGACAGGAATGTTTTGGTCATTTTTTTAAATTTACGAATTTCCGTTTAATTTTGGCTATTTTTGAAAATTCCTTATTCAATTTTTTGAAGTTATAGATGTTTCATACCATATTTTGCTAAAATCAATTCTTAAAGGTTTTAGATTCCCCAACCTCAAATCTTAGTGATTAAGTTTCTAATCATGCTACAGAATCCAAATTCAATCCAGACAGGTTTTTCTCGCCCACATAACAAAAACGCCTTGAATGGACTGGCAGGTGCTTAAATAGCGCCATTTGCCTGCAGAACTTCATACATCATTTGAAACTAGATCCCAAAATACGAAAATAAAACGCTCATAGGTTTTTAAAAGCTATTGGGTTGGATAACCTTTTGAATTGAGGGTGGATGTTGATCATTTGATATAGAATTAAAAGTTCGAGGCATTTATTTGAGGCTATTTAATTATTCCAATTATTTCTCCATTTTCGTAGTTTCGAGCCACTTAAATTTTATTGCTTTTTTTCTGTGCGAATTTGAGAATTTTCAGACATATGATCACTAAAAACCAAGATAGTTTTTAAAACTTTTAATCACAAGTTTCTGTCTTCTTGTTTTGAAAAAAGGAAGACGTTGTTGTGTGATATCATTTTCAATGGCGATGAAACAAAACTTTTTCAAAACAATGTTTTGTACGATTTCTTCTTCTTTTGTTTCA</canonical>
            <polymorphic>CAACAGAAAAATAGAACTGAGAATAGAATCAAATACAACTAGTCATCTTGTCTTCAAAAGTCCGGACGCATCGCGTTGTTCTTCTTCTTCCCTCTAATCCGTATTATTCGCGTGGAGCATTTTCTGAGATTTCTTATGAATTATTCAAGAACTTTTTTTCGGATTCGCAACATAGTTGTGTGGCGAGCGGGGTACGGAAGTAGGCTAATTGATACACTGAGACTTGGCTACTTATATGGTGCAAAACAACGATGCTAAGTTAGCCGCTATTAACTGGAAAATGTTGCGGTTCTCCTCGGAAAAGGACAGGAATGTTTTGGTCATTTTTTTAAATTTACGAATTTCCGTTTAATTTTGGCTATTTTTGAAAATTCCTTATTCAATTTTTTGAAGTTATAGATGTTTCATACCATATTTTGCTAAAATCAATTCTTAAAGGTTTTAGATTCCCCAACCTCAAATCTTAGTGATTAAGTTTCTAATCATGCTACAGAATCCARATTCAATCCAGACAGGTTTTTCTCGCCCACATAACAAAAACGCCTTGAATGGACTGGCAGGTGCTTAAATAGCGCCATTTGCCTGCAGAACTTCATACATCATTTGAAACTAGATCCCAAAATACGAAAATAAAACGCTCATAGGTTTTTAAAAGCTATTGGGTTGGATAACCTTTTGAATTGAGGGTGGATGTTGATCATTTGATATAGAATTAAAAGTTCGAGGCATTTATTTGAGGCTATTTAATTATTCCAATTATTTCTCCATTTTCGTAGTTTCGAGCCACTTAAATTTTATTGCTTTTTTTCTGTGCGAATTTGAGAATTTTCAGACATATGATCACTAAAAACCAAGATAGTTTTTAAAACTTTTAATCACAAGTTTCTGTCTTCTTGTTTTGAAAAAAGGAAGACGTTGTTGTGTGATATCATTTTCAATGGCGATGAAACAAAACTTTTTCAAAACAATGTTTTGTACGATTTCTTCTTCTTTTGTTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>331 291 177 130 30 25 8 8</canonical_bands>
                <polymorphic_bands>421 331 177 30 25 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>179 177 138 125 72 68 46 36 35 32 25 19 12 11 9 8 8</canonical_bands>
                <polymorphic_bands>251 177 138 125 68 46 36 35 32 25 19 12 11 9 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCTATTTTTGAAAATTCCTTAT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAATGATGTATGAAGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGCTATTTTTGAAAATTCCTTATTCAATTTTTTGAAGTTATAGATGTTTCATACCATATTTTGCTAAAATCAATTCTTAAAGGTTTTAGATTCCCCAACCTCAAATCTTAGTGATTAAGTTTCTAATCATGCTACAGAATCCAAATTCAATCCAGACAGGTTTTTCTCGCCCACATAACAAAAACGCCTTGAATGGACTGGCAGGTGCTTAAATAGCGCCATTTGCCTGCAGAACTTCATACATCATTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GGCTATTTTTGAAAATTCCTTATTCAATTTTTTGAAGTTATAGATGTTTCATACCATATTTTGCTAAAATCAATTCTTAAAGGTTTTAGATTCCCCAACCTCAAATCTTAGTGATTAAGTTTCTAATCATGCTACAGAATCCARATTCAATCCAGACAGGTTTTTCTCGCCCACATAACAAAAACGCCTTGAATGGACTGGCAGGTGCTTAAATAGCGCCATTTGCCTGCAGAACTTCATACATCATTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28389</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>15006</contig_pos>
        <strand>+</strand>
        <context>CAGAATCCAR[A/T]TTCAATCCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCAACCTCAAATCTTAGTGATTAAGTTTCTAATCATGCTACAGAATCCAA</left_flank>
        <right_flank>TTCAATCCAGACAGGTTTTTCTCGCCCACATAACAAAAACGCCTTGAATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAGAAAAATAGAACTGAGAATAGAATCAAATACAACTAGTCATCTTGTCTTCAAAAGTCCGGACGCATCGCGTTGTTCTTCTTCTTCCCTCTAATCCGTATTATTCGCGTGGAGCATTTTCTGAGATTTCTTATGAATTATTCAAGAACTTTTTTTCGGATTCGCAACATAGTTGTGTGGCGAGCGGGGTACGGAAGTAGGCTAATTGATACACTGAGACTTGGCTACTTATATGGTGCAAAACAACGATGCTAAGTTAGCCGCTATTAACTGGAAAATGTTGCGGTTCTCCTCGGAAAAGGACAGGAATGTTTTGGTCATTTTTTTAAATTTACGAATTTCCGTTTAATTTTGGCTATTTTTGAAAATTCCTTATTCAATTTTTTGAAGTTATAGATGTTTCATACCATATTTTGCTAAAATCAATTCTTAAAGGTTTTAGATTCCCCAACCTCAAATCTTAGTGATTAAGTTTCTAATCATGCTACAGAATCCAAATTCAATCCAGACAGGTTTTTCTCGCCCACATAACAAAAACGCCTTGAATGGACTGGCAGGTGCTTAAATAGCGCCATTTGCCTGCAGAACTTCATACATCATTTGAAACTAGATCCCAAAATACGAAAATAAAACGCTCATAGGTTTTTAAAAGCTATTGGGTTGGATAACCTTTTGAATTGAGGGTGGATGTTGATCATTTGATATAGAATTAAAAGTTCGAGGCATTTATTTGAGGCTATTTAATTATTCCAATTATTTCTCCATTTTCGTAGTTTCGAGCCACTTAAATTTTATTGCTTTTTTTCTGTGCGAATTTGAGAATTTTCAGACATATGATCACTAAAAACCAAGATAGTTTTTAAAACTTTTAATCACAAGTTTCTGTCTTCTTGTTTTGAAAAAAGGAAGACGTTGTTGTGTGATATCATTTTCAATGGCGATGAAACAAAACTTTTTCAAAACAATGTTTTGTACGATTTCTTCTTCTTTTGTTTCAG</canonical>
            <polymorphic>AACAGAAAAATAGAACTGAGAATAGAATCAAATACAACTAGTCATCTTGTCTTCAAAAGTCCGGACGCATCGCGTTGTTCTTCTTCTTCCCTCTAATCCGTATTATTCGCGTGGAGCATTTTCTGAGATTTCTTATGAATTATTCAAGAACTTTTTTTCGGATTCGCAACATAGTTGTGTGGCGAGCGGGGTACGGAAGTAGGCTAATTGATACACTGAGACTTGGCTACTTATATGGTGCAAAACAACGATGCTAAGTTAGCCGCTATTAACTGGAAAATGTTGCGGTTCTCCTCGGAAAAGGACAGGAATGTTTTGGTCATTTTTTTAAATTTACGAATTTCCGTTTAATTTTGGCTATTTTTGAAAATTCCTTATTCAATTTTTTGAAGTTATAGATGTTTCATACCATATTTTGCTAAAATCAATTCTTAAAGGTTTTAGATTCCCCAACCTCAAATCTTAGTGATTAAGTTTCTAATCATGCTACAGAATCCAAWTTCAATCCAGACAGGTTTTTCTCGCCCACATAACAAAAACGCCTTGAATGGACTGGCAGGTGCTTAAATAGCGCCATTTGCCTGCAGAACTTCATACATCATTTGAAACTAGATCCCAAAATACGAAAATAAAACGCTCATAGGTTTTTAAAAGCTATTGGGTTGGATAACCTTTTGAATTGAGGGTGGATGTTGATCATTTGATATAGAATTAAAAGTTCGAGGCATTTATTTGAGGCTATTTAATTATTCCAATTATTTCTCCATTTTCGTAGTTTCGAGCCACTTAAATTTTATTGCTTTTTTTCTGTGCGAATTTGAGAATTTTCAGACATATGATCACTAAAAACCAAGATAGTTTTTAAAACTTTTAATCACAAGTTTCTGTCTTCTTGTTTTGAAAAAAGGAAGACGTTGTTGTGTGATATCATTTTCAATGGCGATGAAACAAAACTTTTTCAAAACAATGTTTTGTACGATTTCTTCTTCTTTTGTTTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>330 291 178 130 30 25 8 8</canonical_bands>
                <polymorphic_bands>421 330 178 30 25 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>179 178 137 125 72 68 46 36 35 32 25 19 12 11 9 8 8</canonical_bands>
                <polymorphic_bands>251 178 137 125 68 46 36 35 32 25 19 12 11 9 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCTATTTTTGAAAATTCCTTAT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAATGATGTATGAAGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGCTATTTTTGAAAATTCCTTATTCAATTTTTTGAAGTTATAGATGTTTCATACCATATTTTGCTAAAATCAATTCTTAAAGGTTTTAGATTCCCCAACCTCAAATCTTAGTGATTAAGTTTCTAATCATGCTACAGAATCCAAATTCAATCCAGACAGGTTTTTCTCGCCCACATAACAAAAACGCCTTGAATGGACTGGCAGGTGCTTAAATAGCGCCATTTGCCTGCAGAACTTCATACATCATTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GGCTATTTTTGAAAATTCCTTATTCAATTTTTTGAAGTTATAGATGTTTCATACCATATTTTGCTAAAATCAATTCTTAAAGGTTTTAGATTCCCCAACCTCAAATCTTAGTGATTAAGTTTCTAATCATGCTACAGAATCCAAWTTCAATCCAGACAGGTTTTTCTCGCCCACATAACAAAAACGCCTTGAATGGACTGGCAGGTGCTTAAATAGCGCCATTTGCCTGCAGAACTTCATACATCATTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28390</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>15021</contig_pos>
        <strand>+</strand>
        <context>ATCCAGACAG[A/G]TTTTTCTCGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTGATTAAGTTTCTAATCATGCTACAGAATCCAAATTCAATCCAGACAG</left_flank>
        <right_flank>TTTTTCTCGCCCACATAACAAAAACGCCTTGAATGGACTGGCAGGTGCTT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAGAATAGAATCAAATACAACTAGTCATCTTGTCTTCAAAAGTCCGGACGCATCGCGTTGTTCTTCTTCTTCCCTCTAATCCGTATTATTCGCGTGGAGCATTTTCTGAGATTTCTTATGAATTATTCAAGAACTTTTTTTCGGATTCGCAACATAGTTGTGTGGCGAGCGGGGTACGGAAGTAGGCTAATTGATACACTGAGACTTGGCTACTTATATGGTGCAAAACAACGATGCTAAGTTAGCCGCTATTAACTGGAAAATGTTGCGGTTCTCCTCGGAAAAGGACAGGAATGTTTTGGTCATTTTTTTAAATTTACGAATTTCCGTTTAATTTTGGCTATTTTTGAAAATTCCTTATTCAATTTTTTGAAGTTATAGATGTTTCATACCATATTTTGCTAAAATCAATTCTTAAAGGTTTTAGATTCCCCAACCTCAAATCTTAGTGATTAAGTTTCTAATCATGCTACAGAATCCAAATTCAATCCAGACAGGTTTTTCTCGCCCACATAACAAAAACGCCTTGAATGGACTGGCAGGTGCTTAAATAGCGCCATTTGCCTGCAGAACTTCATACATCATTTGAAACTAGATCCCAAAATACGAAAATAAAACGCTCATAGGTTTTTAAAAGCTATTGGGTTGGATAACCTTTTGAATTGAGGGTGGATGTTGATCATTTGATATAGAATTAAAAGTTCGAGGCATTTATTTGAGGCTATTTAATTATTCCAATTATTTCTCCATTTTCGTAGTTTCGAGCCACTTAAATTTTATTGCTTTTTTTCTGTGCGAATTTGAGAATTTTCAGACATATGATCACTAAAAACCAAGATAGTTTTTAAAACTTTTAATCACAAGTTTCTGTCTTCTTGTTTTGAAAAAAGGAAGACGTTGTTGTGTGATATCATTTTCAATGGCGATGAAACAAAACTTTTTCAAAACAATGTTTTGTACGATTTCTTCTTCTTTTGTTTCAGAAAGAGAAAGTTTCT</canonical>
            <polymorphic>CTGAGAATAGAATCAAATACAACTAGTCATCTTGTCTTCAAAAGTCCGGACGCATCGCGTTGTTCTTCTTCTTCCCTCTAATCCGTATTATTCGCGTGGAGCATTTTCTGAGATTTCTTATGAATTATTCAAGAACTTTTTTTCGGATTCGCAACATAGTTGTGTGGCGAGCGGGGTACGGAAGTAGGCTAATTGATACACTGAGACTTGGCTACTTATATGGTGCAAAACAACGATGCTAAGTTAGCCGCTATTAACTGGAAAATGTTGCGGTTCTCCTCGGAAAAGGACAGGAATGTTTTGGTCATTTTTTTAAATTTACGAATTTCCGTTTAATTTTGGCTATTTTTGAAAATTCCTTATTCAATTTTTTGAAGTTATAGATGTTTCATACCATATTTTGCTAAAATCAATTCTTAAAGGTTTTAGATTCCCCAACCTCAAATCTTAGTGATTAAGTTTCTAATCATGCTACAGAATCCAAATTCAATCCAGACAGRTTTTTCTCGCCCACATAACAAAAACGCCTTGAATGGACTGGCAGGTGCTTAAATAGCGCCATTTGCCTGCAGAACTTCATACATCATTTGAAACTAGATCCCAAAATACGAAAATAAAACGCTCATAGGTTTTTAAAAGCTATTGGGTTGGATAACCTTTTGAATTGAGGGTGGATGTTGATCATTTGATATAGAATTAAAAGTTCGAGGCATTTATTTGAGGCTATTTAATTATTCCAATTATTTCTCCATTTTCGTAGTTTCGAGCCACTTAAATTTTATTGCTTTTTTTCTGTGCGAATTTGAGAATTTTCAGACATATGATCACTAAAAACCAAGATAGTTTTTAAAACTTTTAATCACAAGTTTCTGTCTTCTTGTTTTGAAAAAAGGAAGACGTTGTTGTGTGATATCATTTTCAATGGCGATGAAACAAAACTTTTTCAAAACAATGTTTTGTACGATTTCTTCTTCTTTTGTTTCAGAAAGAGAAAGTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCTATTTTTGAAAATTCCTTAT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAATGATGTATGAAGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGCTATTTTTGAAAATTCCTTATTCAATTTTTTGAAGTTATAGATGTTTCATACCATATTTTGCTAAAATCAATTCTTAAAGGTTTTAGATTCCCCAACCTCAAATCTTAGTGATTAAGTTTCTAATCATGCTACAGAATCCAAATTCAATCCAGACAGGTTTTTCTCGCCCACATAACAAAAACGCCTTGAATGGACTGGCAGGTGCTTAAATAGCGCCATTTGCCTGCAGAACTTCATACATCATTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GGCTATTTTTGAAAATTCCTTATTCAATTTTTTGAAGTTATAGATGTTTCATACCATATTTTGCTAAAATCAATTCTTAAAGGTTTTAGATTCCCCAACCTCAAATCTTAGTGATTAAGTTTCTAATCATGCTACAGAATCCAAATTCAATCCAGACAGRTTTTTCTCGCCCACATAACAAAAACGCCTTGAATGGACTGGCAGGTGCTTAAATAGCGCCATTTGCCTGCAGAACTTCATACATCATTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28391</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>15050</contig_pos>
        <strand>+</strand>
        <context>CAAAAACGCC[C/T]TGAATGGACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCCAAATTCAATCCAGACAGGTTTTTCTCGCCCACATAACAAAAACGCC</left_flank>
        <right_flank>TGAATGGACTGGCAGGTGCTTAAATAGCGCCATTTGCCTGCAGAACTTCA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTGTCTTCAAAAGTCCGGACGCATCGCGTTGTTCTTCTTCTTCCCTCTAATCCGTATTATTCGCGTGGAGCATTTTCTGAGATTTCTTATGAATTATTCAAGAACTTTTTTTCGGATTCGCAACATAGTTGTGTGGCGAGCGGGGTACGGAAGTAGGCTAATTGATACACTGAGACTTGGCTACTTATATGGTGCAAAACAACGATGCTAAGTTAGCCGCTATTAACTGGAAAATGTTGCGGTTCTCCTCGGAAAAGGACAGGAATGTTTTGGTCATTTTTTTAAATTTACGAATTTCCGTTTAATTTTGGCTATTTTTGAAAATTCCTTATTCAATTTTTTGAAGTTATAGATGTTTCATACCATATTTTGCTAAAATCAATTCTTAAAGGTTTTAGATTCCCCAACCTCAAATCTTAGTGATTAAGTTTCTAATCATGCTACAGAATCCAAATTCAATCCAGACAGGTTTTTCTCGCCCACATAACAAAAACGCCTTGAATGGACTGGCAGGTGCTTAAATAGCGCCATTTGCCTGCAGAACTTCATACATCATTTGAAACTAGATCCCAAAATACGAAAATAAAACGCTCATAGGTTTTTAAAAGCTATTGGGTTGGATAACCTTTTGAATTGAGGGTGGATGTTGATCATTTGATATAGAATTAAAAGTTCGAGGCATTTATTTGAGGCTATTTAATTATTCCAATTATTTCTCCATTTTCGTAGTTTCGAGCCACTTAAATTTTATTGCTTTTTTTCTGTGCGAATTTGAGAATTTTCAGACATATGATCACTAAAAACCAAGATAGTTTTTAAAACTTTTAATCACAAGTTTCTGTCTTCTTGTTTTGAAAAAAGGAAGACGTTGTTGTGTGATATCATTTTCAATGGCGATGAAACAAAACTTTTTCAAAACAATGTTTTGTACGATTTCTTCTTCTTTTGTTTCAGAAAGAGAAAGTTTCTGTATCAATAACCACAATTACTATATGTCC</canonical>
            <polymorphic>TCTTGTCTTCAAAAGTCCGGACGCATCGCGTTGTTCTTCTTCTTCCCTCTAATCCGTATTATTCGCGTGGAGCATTTTCTGAGATTTCTTATGAATTATTCAAGAACTTTTTTTCGGATTCGCAACATAGTTGTGTGGCGAGCGGGGTACGGAAGTAGGCTAATTGATACACTGAGACTTGGCTACTTATATGGTGCAAAACAACGATGCTAAGTTAGCCGCTATTAACTGGAAAATGTTGCGGTTCTCCTCGGAAAAGGACAGGAATGTTTTGGTCATTTTTTTAAATTTACGAATTTCCGTTTAATTTTGGCTATTTTTGAAAATTCCTTATTCAATTTTTTGAAGTTATAGATGTTTCATACCATATTTTGCTAAAATCAATTCTTAAAGGTTTTAGATTCCCCAACCTCAAATCTTAGTGATTAAGTTTCTAATCATGCTACAGAATCCAAATTCAATCCAGACAGGTTTTTCTCGCCCACATAACAAAAACGCCYTGAATGGACTGGCAGGTGCTTAAATAGCGCCATTTGCCTGCAGAACTTCATACATCATTTGAAACTAGATCCCAAAATACGAAAATAAAACGCTCATAGGTTTTTAAAAGCTATTGGGTTGGATAACCTTTTGAATTGAGGGTGGATGTTGATCATTTGATATAGAATTAAAAGTTCGAGGCATTTATTTGAGGCTATTTAATTATTCCAATTATTTCTCCATTTTCGTAGTTTCGAGCCACTTAAATTTTATTGCTTTTTTTCTGTGCGAATTTGAGAATTTTCAGACATATGATCACTAAAAACCAAGATAGTTTTTAAAACTTTTAATCACAAGTTTCTGTCTTCTTGTTTTGAAAAAAGGAAGACGTTGTTGTGTGATATCATTTTCAATGGCGATGAAACAAAACTTTTTCAAAACAATGTTTTGTACGATTTCTTCTTCTTTTGTTTCAGAAAGAGAAAGTTTCTGTATCAATAACCACAATTACTATATGTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCTATTTTTGAAAATTCCTTAT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAATGATGTATGAAGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGCTATTTTTGAAAATTCCTTATTCAATTTTTTGAAGTTATAGATGTTTCATACCATATTTTGCTAAAATCAATTCTTAAAGGTTTTAGATTCCCCAACCTCAAATCTTAGTGATTAAGTTTCTAATCATGCTACAGAATCCAAATTCAATCCAGACAGGTTTTTCTCGCCCACATAACAAAAACGCCTTGAATGGACTGGCAGGTGCTTAAATAGCGCCATTTGCCTGCAGAACTTCATACATCATTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GGCTATTTTTGAAAATTCCTTATTCAATTTTTTGAAGTTATAGATGTTTCATACCATATTTTGCTAAAATCAATTCTTAAAGGTTTTAGATTCCCCAACCTCAAATCTTAGTGATTAAGTTTCTAATCATGCTACAGAATCCAAATTCAATCCAGACAGGTTTTTCTCGCCCACATAACAAAAACGCCYTGAATGGACTGGCAGGTGCTTAAATAGCGCCATTTGCCTGCAGAACTTCATACATCATTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28392</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>15078</contig_pos>
        <strand>+</strand>
        <context>GCTTAAATAG[C/T]GCCATTTGCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGCCCACATAACAAAAACGCCTTGAATGGACTGGCAGGTGCTTAAATAG</left_flank>
        <right_flank>GCCATTTGCCTGCAGAACTTCATACATCATTTGAAACTAGATCCCAAAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTGTTCTTCTTCTTCCCTCTAATCCGTATTATTCGCGTGGAGCATTTTCTGAGATTTCTTATGAATTATTCAAGAACTTTTTTTCGGATTCGCAACATAGTTGTGTGGCGAGCGGGGTACGGAAGTAGGCTAATTGATACACTGAGACTTGGCTACTTATATGGTGCAAAACAACGATGCTAAGTTAGCCGCTATTAACTGGAAAATGTTGCGGTTCTCCTCGGAAAAGGACAGGAATGTTTTGGTCATTTTTTTAAATTTACGAATTTCCGTTTAATTTTGGCTATTTTTGAAAATTCCTTATTCAATTTTTTGAAGTTATAGATGTTTCATACCATATTTTGCTAAAATCAATTCTTAAAGGTTTTAGATTCCCCAACCTCAAATCTTAGTGATTAAGTTTCTAATCATGCTACAGAATCCAAATTCAATCCAGACAGGTTTTTCTCGCCCACATAACAAAAACGCCTTGAATGGACTGGCAGGTGCTTAAATAGCGCCATTTGCCTGCAGAACTTCATACATCATTTGAAACTAGATCCCAAAATACGAAAATAAAACGCTCATAGGTTTTTAAAAGCTATTGGGTTGGATAACCTTTTGAATTGAGGGTGGATGTTGATCATTTGATATAGAATTAAAAGTTCGAGGCATTTATTTGAGGCTATTTAATTATTCCAATTATTTCTCCATTTTCGTAGTTTCGAGCCACTTAAATTTTATTGCTTTTTTTCTGTGCGAATTTGAGAATTTTCAGACATATGATCACTAAAAACCAAGATAGTTTTTAAAACTTTTAATCACAAGTTTCTGTCTTCTTGTTTTGAAAAAAGGAAGACGTTGTTGTGTGATATCATTTTCAATGGCGATGAAACAAAACTTTTTCAAAACAATGTTTTGTACGATTTCTTCTTCTTTTGTTTCAGAAAGAGAAAGTTTCTGTATCAATAACCACAATTACTATATGTCCCAATTAAAATTGAAATACCTCCGCATTT</canonical>
            <polymorphic>CGTTGTTCTTCTTCTTCCCTCTAATCCGTATTATTCGCGTGGAGCATTTTCTGAGATTTCTTATGAATTATTCAAGAACTTTTTTTCGGATTCGCAACATAGTTGTGTGGCGAGCGGGGTACGGAAGTAGGCTAATTGATACACTGAGACTTGGCTACTTATATGGTGCAAAACAACGATGCTAAGTTAGCCGCTATTAACTGGAAAATGTTGCGGTTCTCCTCGGAAAAGGACAGGAATGTTTTGGTCATTTTTTTAAATTTACGAATTTCCGTTTAATTTTGGCTATTTTTGAAAATTCCTTATTCAATTTTTTGAAGTTATAGATGTTTCATACCATATTTTGCTAAAATCAATTCTTAAAGGTTTTAGATTCCCCAACCTCAAATCTTAGTGATTAAGTTTCTAATCATGCTACAGAATCCAAATTCAATCCAGACAGGTTTTTCTCGCCCACATAACAAAAACGCCTTGAATGGACTGGCAGGTGCTTAAATAGYGCCATTTGCCTGCAGAACTTCATACATCATTTGAAACTAGATCCCAAAATACGAAAATAAAACGCTCATAGGTTTTTAAAAGCTATTGGGTTGGATAACCTTTTGAATTGAGGGTGGATGTTGATCATTTGATATAGAATTAAAAGTTCGAGGCATTTATTTGAGGCTATTTAATTATTCCAATTATTTCTCCATTTTCGTAGTTTCGAGCCACTTAAATTTTATTGCTTTTTTTCTGTGCGAATTTGAGAATTTTCAGACATATGATCACTAAAAACCAAGATAGTTTTTAAAACTTTTAATCACAAGTTTCTGTCTTCTTGTTTTGAAAAAAGGAAGACGTTGTTGTGTGATATCATTTTCAATGGCGATGAAACAAAACTTTTTCAAAACAATGTTTTGTACGATTTCTTCTTCTTTTGTTTCAGAAAGAGAAAGTTTCTGTATCAATAACCACAATTACTATATGTCCCAATTAAAATTGAAATACCTCCGCATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 309 187</canonical_bands>
                <polymorphic_bands>813 187</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATATTTTGCTAAAATCAATTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAACCTATGAGCGTTTTATTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CCATATTTTGCTAAAATCAATTCTTAAAGGTTTTAGATTCCCCAACCTCAAATCTTAGTGATTAAGTTTCTAATCATGCTACAGAATCCAAATTCAATCCAGACAGGTTTTTCTCGCCCACATAACAAAAACGCCTTGAATGGACTGGCAGGTGCTTAAATAGCGCCATTTGCCTGCAGAACTTCATACATCATTTGAAACTAGATCCCAAAATACGAAAATAAAACGCTCATAGGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CCATATTTTGCTAAAATCAATTCTTAAAGGTTTTAGATTCCCCAACCTCAAATCTTAGTGATTAAGTTTCTAATCATGCTACAGAATCCAAATTCAATCCAGACAGGTTTTTCTCGCCCACATAACAAAAACGCCTTGAATGGACTGGCAGGTGCTTAAATAGYGCCATTTGCCTGCAGAACTTCATACATCATTTGAAACTAGATCCCAAAATACGAAAATAAAACGCTCATAGGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28393</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>19480</contig_pos>
        <strand></strand>
        <context>CACATGGGCG[G/A]CGGCTACTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGCTATTGTACGGATAAGGTCAAAACCAAGAAACAGTATGCACATGGGCG</left_flank>
        <right_flank>CGGCTACTAGATTTAGTAGATATTCATATTCTGGATTATTTGATAGGTAG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAAATACTGTAATTTTCTAATAAATCTCCAATTTTCAGAGTTCTTGGATTCCGACGAGCCATCCCAACTGTCGGACGAGTCCTCAACATGACTACAGAACTCTTCGAGAAGGCTGAAAAGAAATTGAAGAAGACTTTCTTCTTCTCTCCAGGTACCCGACATTTTTTCTTCCAATTTTTCATCTGATTCTTCTTTTTCAGCCAAAAACTTTTGCTTCGTGTCTCGCTGTGATTATTACTGTGACACAACGCATGCAATCTGTGGTCTTCCGGATATGAAAGAAGGAAGTGTTCAAGTTTTCCTTCCCGATGAGTCTGCAGTTCCACGAAAGCACAATAGGAGTCCTTATAGACGGTAATCTCTTTTGAAATGAGAATTGTCAGCGAAAAATCGGATTTCAGAACATACTCCAAAAAGAATCAAGTCGCCGAGTGGCAATCAAGTATAAGCTATTGTACGGATAAGGTCAAAACCAAGAAACAGTATGCACATGGGCGGCGGCTACTAGATTTAGTAGATATTCATATTCTGGATTATTTGATAGGTAGATATTTCAGAATCCAAAATTTTTAAAATTAAATTATTAATTCCAGGAAACCAAGATAGACACCACTTTGAATCATTCAACGTGTTCACGGATCTCCCATCCTATGCTATCCACTTGGATCATGGAAGAGCTTTCGGTAGATCGGATATTGACGACGACGATATTATTCTTCCTTTACGTCAATGTTGTATCATCCGACCATCCACTTTCAAGACCCTTCTCGACTTCTACGGTTCGCCAAAGTCGTTGACGAAAGCGCTGCACGAGTCTTTATCCAAAGACCCGGCTCATCCGATTCTTGCCTACAAACATTATCCGGCCATGGAAAGGCGATTAAGCAAAGGTGAGTATAGAATGGGAACGAAGGGGACGTTCTGGAGAATTTACACTAATTTGAAAATTTTTCAGTAATGGCCTACATATTGGAGTGCATAGAGTCCCGAGGAGTTTC</canonical>
            <polymorphic>AGAAAATACTGTAATTTTCTAATAAATCTCCAATTTTCAGAGTTCTTGGATTCCGACGAGCCATCCCAACTGTCGGACGAGTCCTCAACATGACTACAGAACTCTTCGAGAAGGCTGAAAAGAAATTGAAGAAGACTTTCTTCTTCTCTCCAGGTACCCGACATTTTTTCTTCCAATTTTTCATCTGATTCTTCTTTTTCAGCCAAAAACTTTTGCTTCGTGTCTCGCTGTGATTATTACTGTGACACAACGCATGCAATCTGTGGTCTTCCGGATATGAAAGAAGGAAGTGTTCAAGTTTTCCTTCCCGATGAGTCTGCAGTTCCACGAAAGCACAATAGGAGTCCTTATAGACGGTAATCTCTTTTGAAATGAGAATTGTCAGCGAAAAATCGGATTTCAGAACATACTCCAAAAAGAATCAAGTCGCCGAGTGGCAATCAAGTATAAGCTATTGTACGGATAAGGTCAAAACCAAGAAACAGTATGCACATGGGCGRCGGCTACTAGATTTAGTAGATATTCATATTCTGGATTATTTGATAGGTAGATATTTCAGAATCCAAAATTTTTAAAATTAAATTATTAATTCCAGGAAACCAAGATAGACACCACTTTGAATCATTCAACGTGTTCACGGATCTCCCATCCTATGCTATCCACTTGGATCATGGAAGAGCTTTCGGTAGATCGGATATTGACGACGACGATATTATTCTTCCTTTACGTCAATGTTGTATCATCCGACCATCCACTTTCAAGACCCTTCTCGACTTCTACGGTTCGCCAAAGTCGTTGACGAAAGCGCTGCACGAGTCTTTATCCAAAGACCCGGCTCATCCGATTCTTGCCTACAAACATTATCCGGCCATGGAAAGGCGATTAAGCAAAGGTGAGTATAGAATGGGAACGAAGGGGACGTTCTGGAGAATTTACACTAATTTGAAAATTTTTCAGTAATGGCCTACATATTGGAGTGCATAGAGTCCCGAGGAGTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 496 3</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 310 190</canonical_bands>
                <polymorphic_bands>810 190</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTCAGAACATACTCCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAATGATTCAAAGTGGTGTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>GATTTCAGAACATACTCCAAAAAGAATCAAGTCGCCGAGTGGCAATCAAGTATAAGCTATTGTACGGATAAGGTCAAAACCAAGAAACAGTATGCACATGGGCGGCGGCTACTAGATTTAGTAGATATTCATATTCTGGATTATTTGATAGGTAGATATTTCAGAATCCAAAATTTTTAAAATTAAATTATTAATTCCAGGAAACCAAGATAGACACCACTTTGAATCATTC</canonical_amplicon>
		<polymorphic_amplicon>GATTTCAGAACATACTCCAAAAAGAATCAAGTCGCCGAGTGGCAATCAAGTATAAGCTATTGTACGGATAAGGTCAAAACCAAGAAACAGTATGCACATGGGCGRCGGCTACTAGATTTAGTAGATATTCATATTCTGGATTATTTGATAGGTAGATATTTCAGAATCCAAAATTTTTAAAATTAAATTATTAATTCCAGGAAACCAAGATAGACACCACTTTGAATCATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28394</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>19757</contig_pos>
        <strand></strand>
        <context>TTCTCGACTT[C/T]TACGGTTCGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTCAATGTTGTATCATCCGACCATCCACTTTCAAGACCCTTCTCGACTT</left_flank>
        <right_flank>TACGGTTCGCCAAAGTCGTTGACGAAAGCGCTGCACGAGTCTTTATCCAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAGAAGGAAGTGTTCAAGTTTTCCTTCCCGATGAGTCTGCAGTTCCACGAAAGCACAATAGGAGTCCTTATAGACGGTAATCTCTTTTGAAATGAGAATTGTCAGCGAAAAATCGGATTTCAGAACATACTCCAAAAAGAATCAAGTCGCCGAGTGGCAATCAAGTATAAGCTATTGTACGGATAAGGTCAAAACCAAGAAACAGTATGCACATGGGCGGCGGCTACTAGATTTAGTAGATATTCATATTCTGGATTATTTGATAGGTAGATATTTCAGAATCCAAAATTTTTAAAATTAAATTATTAATTCCAGGAAACCAAGATAGACACCACTTTGAATCATTCAACGTGTTCACGGATCTCCCATCCTATGCTATCCACTTGGATCATGGAAGAGCTTTCGGTAGATCGGATATTGACGACGACGATATTATTCTTCCTTTACGTCAATGTTGTATCATCCGACCATCCACTTTCAAGACCCTTCTCGACTTCTACGGTTCGCCAAAGTCGTTGACGAAAGCGCTGCACGAGTCTTTATCCAAAGACCCGGCTCATCCGATTCTTGCCTACAAACATTATCCGGCCATGGAAAGGCGATTAAGCAAAGGTGAGTATAGAATGGGAACGAAGGGGACGTTCTGGAGAATTTACACTAATTTGAAAATTTTTCAGTAATGGCCTACATATTGGAGTGCATAGAGTCCCGAGGAGTTTCCGAAGTATTAGTACCCGAATACAACAATCCGGATGTCTCAGATGTTGATCAAAATGATGAAGATCAGAGCGAAGAGCATCAGGACAAGAAAGACGAAAAGAAAACAGTTTAGTCAATTAATTGTTTAGATAGAATTCAATTTATCAAGGTCATGTAGTAGCCATTTTGCAATAATTTTTTTTGTTTTTTTATTCGCAATCCGGGTCCCAAGCTTCTTTCACTTTCTGGTATTAGTTGTATTTTCTCATAATTTTTTTTCGTAGTTTTTTTCTGTCCC</canonical>
            <polymorphic>TGAAAGAAGGAAGTGTTCAAGTTTTCCTTCCCGATGAGTCTGCAGTTCCACGAAAGCACAATAGGAGTCCTTATAGACGGTAATCTCTTTTGAAATGAGAATTGTCAGCGAAAAATCGGATTTCAGAACATACTCCAAAAAGAATCAAGTCGCCGAGTGGCAATCAAGTATAAGCTATTGTACGGATAAGGTCAAAACCAAGAAACAGTATGCACATGGGCGGCGGCTACTAGATTTAGTAGATATTCATATTCTGGATTATTTGATAGGTAGATATTTCAGAATCCAAAATTTTTAAAATTAAATTATTAATTCCAGGAAACCAAGATAGACACCACTTTGAATCATTCAACGTGTTCACGGATCTCCCATCCTATGCTATCCACTTGGATCATGGAAGAGCTTTCGGTAGATCGGATATTGACGACGACGATATTATTCTTCCTTTACGTCAATGTTGTATCATCCGACCATCCACTTTCAAGACCCTTCTCGACTTYTACGGTTCGCCAAAGTCGTTGACGAAAGCGCTGCACGAGTCTTTATCCAAAGACCCGGCTCATCCGATTCTTGCCTACAAACATTATCCGGCCATGGAAAGGCGATTAAGCAAAGGTGAGTATAGAATGGGAACGAAGGGGACGTTCTGGAGAATTTACACTAATTTGAAAATTTTTCAGTAATGGCCTACATATTGGAGTGCATAGAGTCCCGAGGAGTTTCCGAAGTATTAGTACCCGAATACAACAATCCGGATGTCTCAGATGTTGATCAAAATGATGAAGATCAGAGCGAAGAGCATCAGGACAAGAAAGACGAAAAGAAAACAGTTTAGTCAATTAATTGTTTAGATAGAATTCAATTTATCAAGGTCATGTAGTAGCCATTTTGCAATAATTTTTTTTGTTTTTTTATTCGCAATCCGGGTCCCAAGCTTCTTTCACTTTCTGGTATTAGTTGTATTTTCTCATAATTTTTTTTCGTAGTTTTTTTCTGTCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTGACGACGACGATATTATTC</pcr_primer_p1>
		<pcr_primer_p2>TAGTGTAAATTCTCCAGAACGTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TATTGACGACGACGATATTATTCTTCCTTTACGTCAATGTTGTATCATCCGACCATCCACTTTCAAGACCCTTCTCGACTTCTACGGTTCGCCAAAGTCGTTGACGAAAGCGCTGCACGAGTCTTTATCCAAAGACCCGGCTCATCCGATTCTTGCCTACAAACATTATCCGGCCATGGAAAGGCGATTAAGCAAAGGTGAGTATAGAATGGGAACGAAGGGGACGTTCTGGAGAATTTACACTA</canonical_amplicon>
		<polymorphic_amplicon>TATTGACGACGACGATATTATTCTTCCTTTACGTCAATGTTGTATCATCCGACCATCCACTTTCAAGACCCTTCTCGACTTYTACGGTTCGCCAAAGTCGTTGACGAAAGCGCTGCACGAGTCTTTATCCAAAGACCCGGCTCATCCGATTCTTGCCTACAAACATTATCCGGCCATGGAAAGGCGATTAAGCAAAGGTGAGTATAGAATGGGAACGAAGGGGACGTTCTGGAGAATTTACACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28395</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>20012</contig_pos>
        <strand></strand>
        <context>CAACAATCCG[G/A]ATGTCTCAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAGAGTCCCGAGGAGTTTCCGAAGTATTAGTACCCGAATACAACAATCCG</left_flank>
        <right_flank>ATGTCTCAGATGTTGATCAAAATGATGAAGATCAGAGCGAAGAGCATCAG</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATTATTTGATAGGTAGATATTTCAGAATCCAAAATTTTTAAAATTAAATTATTAATTCCAGGAAACCAAGATAGACACCACTTTGAATCATTCAACGTGTTCACGGATCTCCCATCCTATGCTATCCACTTGGATCATGGAAGAGCTTTCGGTAGATCGGATATTGACGACGACGATATTATTCTTCCTTTACGTCAATGTTGTATCATCCGACCATCCACTTTCAAGACCCTTCTCGACTTCTACGGTTCGCCAAAGTCGTTGACGAAAGCGCTGCACGAGTCTTTATCCAAAGACCCGGCTCATCCGATTCTTGCCTACAAACATTATCCGGCCATGGAAAGGCGATTAAGCAAAGGTGAGTATAGAATGGGAACGAAGGGGACGTTCTGGAGAATTTACACTAATTTGAAAATTTTTCAGTAATGGCCTACATATTGGAGTGCATAGAGTCCCGAGGAGTTTCCGAAGTATTAGTACCCGAATACAACAATCCGGATGTCTCAGATGTTGATCAAAATGATGAAGATCAGAGCGAAGAGCATCAGGACAAGAAAGACGAAAAGAAAACAGTTTAGTCAATTAATTGTTTAGATAGAATTCAATTTATCAAGGTCATGTAGTAGCCATTTTGCAATAATTTTTTTTGTTTTTTTATTCGCAATCCGGGTCCCAAGCTTCTTTCACTTTCTGGTATTAGTTGTATTTTCTCATAATTTTTTTTCGTAGTTTTTTTCTGTCCCAATACTATTATCATCTGCCCCATTTCCATCCCATCTCCCATCGCTCCATGGTTTCTCTCTGGTCAAACATTCATTTATGAGGGTCATATTATGTTAGGTTGAATCATTCGGTGTTCCATCATCCCATCCATCCCACACGAACGAAGTGATTATTTTTCTTTTTTTTTTGTGTAGATTTTATTGTTGATTATTATTGTGATTTTTCTCCCCGTTTTCTCCCCGAAACTTTCTCAACTGCTCTATATCACAAACTTC</canonical>
            <polymorphic>GGATTATTTGATAGGTAGATATTTCAGAATCCAAAATTTTTAAAATTAAATTATTAATTCCAGGAAACCAAGATAGACACCACTTTGAATCATTCAACGTGTTCACGGATCTCCCATCCTATGCTATCCACTTGGATCATGGAAGAGCTTTCGGTAGATCGGATATTGACGACGACGATATTATTCTTCCTTTACGTCAATGTTGTATCATCCGACCATCCACTTTCAAGACCCTTCTCGACTTCTACGGTTCGCCAAAGTCGTTGACGAAAGCGCTGCACGAGTCTTTATCCAAAGACCCGGCTCATCCGATTCTTGCCTACAAACATTATCCGGCCATGGAAAGGCGATTAAGCAAAGGTGAGTATAGAATGGGAACGAAGGGGACGTTCTGGAGAATTTACACTAATTTGAAAATTTTTCAGTAATGGCCTACATATTGGAGTGCATAGAGTCCCGAGGAGTTTCCGAAGTATTAGTACCCGAATACAACAATCCGRATGTCTCAGATGTTGATCAAAATGATGAAGATCAGAGCGAAGAGCATCAGGACAAGAAAGACGAAAAGAAAACAGTTTAGTCAATTAATTGTTTAGATAGAATTCAATTTATCAAGGTCATGTAGTAGCCATTTTGCAATAATTTTTTTTGTTTTTTTATTCGCAATCCGGGTCCCAAGCTTCTTTCACTTTCTGGTATTAGTTGTATTTTCTCATAATTTTTTTTCGTAGTTTTTTTCTGTCCCAATACTATTATCATCTGCCCCATTTCCATCCCATCTCCCATCGCTCCATGGTTTCTCTCTGGTCAAACATTCATTTATGAGGGTCATATTATGTTAGGTTGAATCATTCGGTGTTCCATCATCCCATCCATCCCACACGAACGAAGTGATTATTTTTCTTTTTTTTTTGTGTAGATTTTATTGTTGATTATTATTGTGATTTTTCTCCCCGTTTTCTCCCCGAAACTTTCTCAACTGCTCTATATCACAAACTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCCGGA</site>
                <isoschizomers>
                    <enzyme>AccIII</enzyme>
                    <enzyme>BseAI</enzyme>
                    <enzyme>BsiMI</enzyme>
                    <enzyme>Bsp13I</enzyme>
                    <enzyme>BspEI</enzyme>
                    <enzyme>BspMII</enzyme>
                    <enzyme>Kpn2I</enzyme>
                    <enzyme>MroI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>332 300 171 164 33</canonical_bands>
                <polymorphic_bands>335 332 300 33</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>452 227 155 64 51 41 10</canonical_bands>
                <polymorphic_bands>452 227 155 92 64 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACGTTCTGGAGAATTTACACTA</pcr_primer_p1>
		<pcr_primer_p2>ATGGCTACTACATGACCTTGATA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GACGTTCTGGAGAATTTACACTAATTTGAAAATTTTTCAGTAATGGCCTACATATTGGAGTGCATAGAGTCCCGAGGAGTTTCCGAAGTATTAGTACCCGAATACAACAATCCGGATGTCTCAGATGTTGATCAAAATGATGAAGATCAGAGCGAAGAGCATCAGGACAAGAAAGACGAAAAGAAAACAGTTTAGTCAATTAATTGTTTAGATAGAATTCAATTTATCAAGGTCATGTAGTAGCCAT</canonical_amplicon>
		<polymorphic_amplicon>GACGTTCTGGAGAATTTACACTAATTTGAAAATTTTTCAGTAATGGCCTACATATTGGAGTGCATAGAGTCCCGAGGAGTTTCCGAAGTATTAGTACCCGAATACAACAATCCGRATGTCTCAGATGTTGATCAAAATGATGAAGATCAGAGCGAAGAGCATCAGGACAAGAAAGACGAAAAGAAAACAGTTTAGTCAATTAATTGTTTAGATAGAATTCAATTTATCAAGGTCATGTAGTAGCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28396</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>51496</contig_pos>
        <strand>+</strand>
        <context>CAAAACTGTT[G/T]TGATAAACAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGGGGATGAAAATTGTTTTATAGTTTTTTATTCACATTTCAAAACTGTT</left_flank>
        <right_flank>TGATAAACATTTATTATCAATGAATGGGAAAAACAGGAGGAATGAATCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAGCCTGAATTTGTAAAAAAAAACTGAAAATTGATACGGAAATCAGATAAATATAGTCGAGAACAGAACACAATATGTGAAAAGAGCACGTACACTGATTTGAGACAACTATGTTAACTTTAGCGTGATTGGATTTTCGAACAGTTCAAAGAGATCTACAGAATATCTGGAATATAATTTTTTGAGAAAAAGCAGGTGCTTCAAATGAGGAAGCTGATCGAAAACTGTAAAAATCTGAAAATTTAGAGTGCTTTATATACAGGGAGATAGCTTTGCCTAATTATTGTCCATTTTTGGGTGACTCAGGTTTTGAAAAAAAGAAGGTTTTTCAATTTTATCATTATCAGAACTACAGCTTTACAAATAGAAAACAGTTTCAAAATTTCGAAACTTTGAAGATATCCAGTTTTTGCTGTAAGCCACTGACTCGGAAAATTTTGAATTAATTGGGGATGAAAATTGTTTTATAGTTTTTTATTCACATTTCAAAACTGTTTTGATAAACATTTATTATCAATGAATGGGAAAAACAGGAGGAATGAATCATTTCAGAACATGCTTTATTAATTTTTTTGCAGATAAATTATCATTCAAACTGTTCACAATTGGCCACAGTACTTATAATTATCTTTGAGAAACGTCTGAAAAATGTTCACAATCTTTTTAAAATTAAAACTGACAAAGTGAATCAAATGCTGAAAGAAATTGATAAGCTTTTTTAAAACAATGAACTTCAAAAATTTATTATATACTCTTTCGAAACATTTTGATCATCATTGTTTGCTCCGAAATTTTCGCTGAGTATTGAACTCTGAAAGAACCTAGATTGACGGAAAAAAGTTTAAATTGACAACGATGCGGAAATCAAATGAAACAAGACAGGAACGGAACAAAAAGATTGAAAAGAGCACGTACACTGATTCGGTCCATCTATATTGTTAAATTCCAAGTGATTCAATTTTCCGAAAGTCCAACGAGATCTTCAGAATTTCTGAGA</canonical>
            <polymorphic>AAAAAGCCTGAATTTGTAAAAAAAAACTGAAAATTGATACGGAAATCAGATAAATATAGTCGAGAACAGAACACAATATGTGAAAAGAGCACGTACACTGATTTGAGACAACTATGTTAACTTTAGCGTGATTGGATTTTCGAACAGTTCAAAGAGATCTACAGAATATCTGGAATATAATTTTTTGAGAAAAAGCAGGTGCTTCAAATGAGGAAGCTGATCGAAAACTGTAAAAATCTGAAAATTTAGAGTGCTTTATATACAGGGAGATAGCTTTGCCTAATTATTGTCCATTTTTGGGTGACTCAGGTTTTGAAAAAAAGAAGGTTTTTCAATTTTATCATTATCAGAACTACAGCTTTACAAATAGAAAACAGTTTCAAAATTTCGAAACTTTGAAGATATCCAGTTTTTGCTGTAAGCCACTGACTCGGAAAATTTTGAATTAATTGGGGATGAAAATTGTTTTATAGTTTTTTATTCACATTTCAAAACTGTTKTGATAAACATTTATTATCAATGAATGGGAAAAACAGGAGGAATGAATCATTTCAGAACATGCTTTATTAATTTTTTTGCAGATAAATTATCATTCAAACTGTTCACAATTGGCCACAGTACTTATAATTATCTTTGAGAAACGTCTGAAAAATGTTCACAATCTTTTTAAAATTAAAACTGACAAAGTGAATCAAATGCTGAAAGAAATTGATAAGCTTTTTTAAAACAATGAACTTCAAAAATTTATTATATACTCTTTCGAAACATTTTGATCATCATTGTTTGCTCCGAAATTTTCGCTGAGTATTGAACTCTGAAAGAACCTAGATTGACGGAAAAAAGTTTAAATTGACAACGATGCGGAAATCAAATGAAACAAGACAGGAACGGAACAAAAAGATTGAAAAGAGCACGTACACTGATTCGGTCCATCTATATTGTTAAATTCCAAGTGATTCAATTTTCCGAAAGTCCAACGAGATCTTCAGAATTTCTGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATATCCAGTTTTTGCTGTAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCAGACGTTTCTCAAAGATAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGATATCCAGTTTTTGCTGTAAGCCACTGACTCGGAAAATTTTGAATTAATTGGGGATGAAAATTGTTTTATAGTTTTTTATTCACATTTCAAAACTGTTTTGATAAACATTTATTATCAATGAATGGGAAAAACAGGAGGAATGAATCATTTCAGAACATGCTTTATTAATTTTTTTGCAGATAAATTATCATTCAAACTGTTCACAATTGGCCACAGTACTTATAATTATCTTTGAGAAACGTCTGAA</canonical_amplicon>
		<polymorphic_amplicon>AGATATCCAGTTTTTGCTGTAAGCCACTGACTCGGAAAATTTTGAATTAATTGGGGATGAAAATTGTTTTATAGTTTTTTATTCACATTTCAAAACTGTTKTGATAAACATTTATTATCAATGAATGGGAAAAACAGGAGGAATGAATCATTTCAGAACATGCTTTATTAATTTTTTTGCAGATAAATTATCATTCAAACTGTTCACAATTGGCCACAGTACTTATAATTATCTTTGAGAAACGTCTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28397</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>51543</contig_pos>
        <strand>+</strand>
        <context>GAGGAATGAA[A/T]CATTTCAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTTTGATAAACATTTATTATCAATGAATGGGAAAAACAGGAGGAATGAA</left_flank>
        <right_flank>CATTTCAGAACATGCTTTATTAATTTTTTTGCAGATAAATTATCATTCAA</right_flank>
        <qual_score>134</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATAAATATAGTCGAGAACAGAACACAATATGTGAAAAGAGCACGTACACTGATTTGAGACAACTATGTTAACTTTAGCGTGATTGGATTTTCGAACAGTTCAAAGAGATCTACAGAATATCTGGAATATAATTTTTTGAGAAAAAGCAGGTGCTTCAAATGAGGAAGCTGATCGAAAACTGTAAAAATCTGAAAATTTAGAGTGCTTTATATACAGGGAGATAGCTTTGCCTAATTATTGTCCATTTTTGGGTGACTCAGGTTTTGAAAAAAAGAAGGTTTTTCAATTTTATCATTATCAGAACTACAGCTTTACAAATAGAAAACAGTTTCAAAATTTCGAAACTTTGAAGATATCCAGTTTTTGCTGTAAGCCACTGACTCGGAAAATTTTGAATTAATTGGGGATGAAAATTGTTTTATAGTTTTTTATTCACATTTCAAAACTGTTTTGATAAACATTTATTATCAATGAATGGGAAAAACAGGAGGAATGAATCATTTCAGAACATGCTTTATTAATTTTTTTGCAGATAAATTATCATTCAAACTGTTCACAATTGGCCACAGTACTTATAATTATCTTTGAGAAACGTCTGAAAAATGTTCACAATCTTTTTAAAATTAAAACTGACAAAGTGAATCAAATGCTGAAAGAAATTGATAAGCTTTTTTAAAACAATGAACTTCAAAAATTTATTATATACTCTTTCGAAACATTTTGATCATCATTGTTTGCTCCGAAATTTTCGCTGAGTATTGAACTCTGAAAGAACCTAGATTGACGGAAAAAAGTTTAAATTGACAACGATGCGGAAATCAAATGAAACAAGACAGGAACGGAACAAAAAGATTGAAAAGAGCACGTACACTGATTCGGTCCATCTATATTGTTAAATTCCAAGTGATTCAATTTTCCGAAAGTCCAACGAGATCTTCAGAATTTCTGAGATAAAATTCTTTGAACATCTGCAGGTGCTTGAGATAGAAAAGCTGCTA</canonical>
            <polymorphic>AGATAAATATAGTCGAGAACAGAACACAATATGTGAAAAGAGCACGTACACTGATTTGAGACAACTATGTTAACTTTAGCGTGATTGGATTTTCGAACAGTTCAAAGAGATCTACAGAATATCTGGAATATAATTTTTTGAGAAAAAGCAGGTGCTTCAAATGAGGAAGCTGATCGAAAACTGTAAAAATCTGAAAATTTAGAGTGCTTTATATACAGGGAGATAGCTTTGCCTAATTATTGTCCATTTTTGGGTGACTCAGGTTTTGAAAAAAAGAAGGTTTTTCAATTTTATCATTATCAGAACTACAGCTTTACAAATAGAAAACAGTTTCAAAATTTCGAAACTTTGAAGATATCCAGTTTTTGCTGTAAGCCACTGACTCGGAAAATTTTGAATTAATTGGGGATGAAAATTGTTTTATAGTTTTTTATTCACATTTCAAAACTGTTTTGATAAACATTTATTATCAATGAATGGGAAAAACAGGAGGAATGAAWCATTTCAGAACATGCTTTATTAATTTTTTTGCAGATAAATTATCATTCAAACTGTTCACAATTGGCCACAGTACTTATAATTATCTTTGAGAAACGTCTGAAAAATGTTCACAATCTTTTTAAAATTAAAACTGACAAAGTGAATCAAATGCTGAAAGAAATTGATAAGCTTTTTTAAAACAATGAACTTCAAAAATTTATTATATACTCTTTCGAAACATTTTGATCATCATTGTTTGCTCCGAAATTTTCGCTGAGTATTGAACTCTGAAAGAACCTAGATTGACGGAAAAAAGTTTAAATTGACAACGATGCGGAAATCAAATGAAACAAGACAGGAACGGAACAAAAAGATTGAAAAGAGCACGTACACTGATTCGGTCCATCTATATTGTTAAATTCCAAGTGATTCAATTTTCCGAAAGTCCAACGAGATCTTCAGAATTTCTGAGATAAAATTCTTTGAACATCTGCAGGTGCTTGAGATAGAAAAGCTGCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>256 233 145 125 116 92 33</canonical_bands>
                <polymorphic_bands>261 256 233 125 92 33</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>497 233 145 92 33</canonical_bands>
                <polymorphic_bands>642 233 92 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATATCCAGTTTTTGCTGTAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCAGACGTTTCTCAAAGATAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGATATCCAGTTTTTGCTGTAAGCCACTGACTCGGAAAATTTTGAATTAATTGGGGATGAAAATTGTTTTATAGTTTTTTATTCACATTTCAAAACTGTTTTGATAAACATTTATTATCAATGAATGGGAAAAACAGGAGGAATGAATCATTTCAGAACATGCTTTATTAATTTTTTTGCAGATAAATTATCATTCAAACTGTTCACAATTGGCCACAGTACTTATAATTATCTTTGAGAAACGTCTGAA</canonical_amplicon>
		<polymorphic_amplicon>AGATATCCAGTTTTTGCTGTAAGCCACTGACTCGGAAAATTTTGAATTAATTGGGGATGAAAATTGTTTTATAGTTTTTTATTCACATTTCAAAACTGTTTTGATAAACATTTATTATCAATGAATGGGAAAAACAGGAGGAATGAAWCATTTCAGAACATGCTTTATTAATTTTTTTGCAGATAAATTATCATTCAAACTGTTCACAATTGGCCACAGTACTTATAATTATCTTTGAGAAACGTCTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28398</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>51657</contig_pos>
        <strand>+</strand>
        <context>AATGTTCACA[A/T]TCTTTTTAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGCCACAGTACTTATAATTATCTTTGAGAAACGTCTGAAAAATGTTCACA</left_flank>
        <right_flank>TCTTTTTAAAATTAAAACTGACAAAGTGAATCAAATGCTGAAAGAAATTG</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAATATCTGGAATATAATTTTTTGAGAAAAAGCAGGTGCTTCAAATGAGGAAGCTGATCGAAAACTGTAAAAATCTGAAAATTTAGAGTGCTTTATATACAGGGAGATAGCTTTGCCTAATTATTGTCCATTTTTGGGTGACTCAGGTTTTGAAAAAAAGAAGGTTTTTCAATTTTATCATTATCAGAACTACAGCTTTACAAATAGAAAACAGTTTCAAAATTTCGAAACTTTGAAGATATCCAGTTTTTGCTGTAAGCCACTGACTCGGAAAATTTTGAATTAATTGGGGATGAAAATTGTTTTATAGTTTTTTATTCACATTTCAAAACTGTTTTGATAAACATTTATTATCAATGAATGGGAAAAACAGGAGGAATGAATCATTTCAGAACATGCTTTATTAATTTTTTTGCAGATAAATTATCATTCAAACTGTTCACAATTGGCCACAGTACTTATAATTATCTTTGAGAAACGTCTGAAAAATGTTCACAATCTTTTTAAAATTAAAACTGACAAAGTGAATCAAATGCTGAAAGAAATTGATAAGCTTTTTTAAAACAATGAACTTCAAAAATTTATTATATACTCTTTCGAAACATTTTGATCATCATTGTTTGCTCCGAAATTTTCGCTGAGTATTGAACTCTGAAAGAACCTAGATTGACGGAAAAAAGTTTAAATTGACAACGATGCGGAAATCAAATGAAACAAGACAGGAACGGAACAAAAAGATTGAAAAGAGCACGTACACTGATTCGGTCCATCTATATTGTTAAATTCCAAGTGATTCAATTTTCCGAAAGTCCAACGAGATCTTCAGAATTTCTGAGATAAAATTCTTTGAACATCTGCAGGTGCTTGAGATAGAAAAGCTGCTAAAAAACTCATAGTCTGAAAATTGTCGGAAACTTAGTTGCAACAGTGATCAATGATTTACTATCCATCCAGGAAGAGGAATATTCCAAGAACTTGTTCAACAACACATCAACAAT</canonical>
            <polymorphic>CAGAATATCTGGAATATAATTTTTTGAGAAAAAGCAGGTGCTTCAAATGAGGAAGCTGATCGAAAACTGTAAAAATCTGAAAATTTAGAGTGCTTTATATACAGGGAGATAGCTTTGCCTAATTATTGTCCATTTTTGGGTGACTCAGGTTTTGAAAAAAAGAAGGTTTTTCAATTTTATCATTATCAGAACTACAGCTTTACAAATAGAAAACAGTTTCAAAATTTCGAAACTTTGAAGATATCCAGTTTTTGCTGTAAGCCACTGACTCGGAAAATTTTGAATTAATTGGGGATGAAAATTGTTTTATAGTTTTTTATTCACATTTCAAAACTGTTTTGATAAACATTTATTATCAATGAATGGGAAAAACAGGAGGAATGAATCATTTCAGAACATGCTTTATTAATTTTTTTGCAGATAAATTATCATTCAAACTGTTCACAATTGGCCACAGTACTTATAATTATCTTTGAGAAACGTCTGAAAAATGTTCACAWTCTTTTTAAAATTAAAACTGACAAAGTGAATCAAATGCTGAAAGAAATTGATAAGCTTTTTTAAAACAATGAACTTCAAAAATTTATTATATACTCTTTCGAAACATTTTGATCATCATTGTTTGCTCCGAAATTTTCGCTGAGTATTGAACTCTGAAAGAACCTAGATTGACGGAAAAAAGTTTAAATTGACAACGATGCGGAAATCAAATGAAACAAGACAGGAACGGAACAAAAAGATTGAAAAGAGCACGTACACTGATTCGGTCCATCTATATTGTTAAATTCCAAGTGATTCAATTTTCCGAAAGTCCAACGAGATCTTCAGAATTTCTGAGATAAAATTCTTTGAACATCTGCAGGTGCTTGAGATAGAAAAGCTGCTAAAAAACTCATAGTCTGAAAATTGTCGGAAACTTAGTTGCAACAGTGATCAATGATTTACTATCCATCCAGGAAGAGGAATATTCCAAGAACTTGTTCAACAACACATCAACAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTATCATTCAAACTGTTCACAA</pcr_primer_p1>
		<pcr_primer_p2>GTCAATCTAGGTTCTTTCAGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTATCATTCAAACTGTTCACAATTGGCCACAGTACTTATAATTATCTTTGAGAAACGTCTGAAAAATGTTCACAATCTTTTTAAAATTAAAACTGACAAAGTGAATCAAATGCTGAAAGAAATTGATAAGCTTTTTTAAAACAATGAACTTCAAAAATTTATTATATACTCTTTCGAAACATTTTGATCATCATTGTTTGCTCCGAAATTTTCGCTGAGTATTGAACTCTGAAAGAACCTAGATTGAC</canonical_amplicon>
		<polymorphic_amplicon>AATTATCATTCAAACTGTTCACAATTGGCCACAGTACTTATAATTATCTTTGAGAAACGTCTGAAAAATGTTCACAWTCTTTTTAAAATTAAAACTGACAAAGTGAATCAAATGCTGAAAGAAATTGATAAGCTTTTTTAAAACAATGAACTTCAAAAATTTATTATATACTCTTTCGAAACATTTTGATCATCATTGTTTGCTCCGAAATTTTCGCTGAGTATTGAACTCTGAAAGAACCTAGATTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28399</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>51695</contig_pos>
        <strand>+</strand>
        <context>GAATCAAATG[C/T]TGAAAGAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATGTTCACAATCTTTTTAAAATTAAAACTGACAAAGTGAATCAAATG</left_flank>
        <right_flank>TGAAAGAAATTGATAAGCTTTTTTAAAACAATGAACTTCAAAAATTTATT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTTCAAATGAGGAAGCTGATCGAAAACTGTAAAAATCTGAAAATTTAGAGTGCTTTATATACAGGGAGATAGCTTTGCCTAATTATTGTCCATTTTTGGGTGACTCAGGTTTTGAAAAAAAGAAGGTTTTTCAATTTTATCATTATCAGAACTACAGCTTTACAAATAGAAAACAGTTTCAAAATTTCGAAACTTTGAAGATATCCAGTTTTTGCTGTAAGCCACTGACTCGGAAAATTTTGAATTAATTGGGGATGAAAATTGTTTTATAGTTTTTTATTCACATTTCAAAACTGTTTTGATAAACATTTATTATCAATGAATGGGAAAAACAGGAGGAATGAATCATTTCAGAACATGCTTTATTAATTTTTTTGCAGATAAATTATCATTCAAACTGTTCACAATTGGCCACAGTACTTATAATTATCTTTGAGAAACGTCTGAAAAATGTTCACAATCTTTTTAAAATTAAAACTGACAAAGTGAATCAAATGCTGAAAGAAATTGATAAGCTTTTTTAAAACAATGAACTTCAAAAATTTATTATATACTCTTTCGAAACATTTTGATCATCATTGTTTGCTCCGAAATTTTCGCTGAGTATTGAACTCTGAAAGAACCTAGATTGACGGAAAAAAGTTTAAATTGACAACGATGCGGAAATCAAATGAAACAAGACAGGAACGGAACAAAAAGATTGAAAAGAGCACGTACACTGATTCGGTCCATCTATATTGTTAAATTCCAAGTGATTCAATTTTCCGAAAGTCCAACGAGATCTTCAGAATTTCTGAGATAAAATTCTTTGAACATCTGCAGGTGCTTGAGATAGAAAAGCTGCTAAAAAACTCATAGTCTGAAAATTGTCGGAAACTTAGTTGCAACAGTGATCAATGATTTACTATCCATCCAGGAAGAGGAATATTCCAAGAACTTGTTCAACAACACATCAACAATGAAACGATGTTCTTGAGCATGTTCAAAATAAGCACAAA</canonical>
            <polymorphic>TGCTTCAAATGAGGAAGCTGATCGAAAACTGTAAAAATCTGAAAATTTAGAGTGCTTTATATACAGGGAGATAGCTTTGCCTAATTATTGTCCATTTTTGGGTGACTCAGGTTTTGAAAAAAAGAAGGTTTTTCAATTTTATCATTATCAGAACTACAGCTTTACAAATAGAAAACAGTTTCAAAATTTCGAAACTTTGAAGATATCCAGTTTTTGCTGTAAGCCACTGACTCGGAAAATTTTGAATTAATTGGGGATGAAAATTGTTTTATAGTTTTTTATTCACATTTCAAAACTGTTTTGATAAACATTTATTATCAATGAATGGGAAAAACAGGAGGAATGAATCATTTCAGAACATGCTTTATTAATTTTTTTGCAGATAAATTATCATTCAAACTGTTCACAATTGGCCACAGTACTTATAATTATCTTTGAGAAACGTCTGAAAAATGTTCACAATCTTTTTAAAATTAAAACTGACAAAGTGAATCAAATGYTGAAAGAAATTGATAAGCTTTTTTAAAACAATGAACTTCAAAAATTTATTATATACTCTTTCGAAACATTTTGATCATCATTGTTTGCTCCGAAATTTTCGCTGAGTATTGAACTCTGAAAGAACCTAGATTGACGGAAAAAAGTTTAAATTGACAACGATGCGGAAATCAAATGAAACAAGACAGGAACGGAACAAAAAGATTGAAAAGAGCACGTACACTGATTCGGTCCATCTATATTGTTAAATTCCAAGTGATTCAATTTTCCGAAAGTCCAACGAGATCTTCAGAATTTCTGAGATAAAATTCTTTGAACATCTGCAGGTGCTTGAGATAGAAAAGCTGCTAAAAAACTCATAGTCTGAAAATTGTCGGAAACTTAGTTGCAACAGTGATCAATGATTTACTATCCATCCAGGAAGAGGAATATTCCAAGAACTTGTTCAACAACACATCAACAATGAAACGATGTTCTTGAGCATGTTCAAAATAAGCACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTATCATTCAAACTGTTCACAA</pcr_primer_p1>
		<pcr_primer_p2>GTCAATCTAGGTTCTTTCAGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTATCATTCAAACTGTTCACAATTGGCCACAGTACTTATAATTATCTTTGAGAAACGTCTGAAAAATGTTCACAATCTTTTTAAAATTAAAACTGACAAAGTGAATCAAATGCTGAAAGAAATTGATAAGCTTTTTTAAAACAATGAACTTCAAAAATTTATTATATACTCTTTCGAAACATTTTGATCATCATTGTTTGCTCCGAAATTTTCGCTGAGTATTGAACTCTGAAAGAACCTAGATTGAC</canonical_amplicon>
		<polymorphic_amplicon>AATTATCATTCAAACTGTTCACAATTGGCCACAGTACTTATAATTATCTTTGAGAAACGTCTGAAAAATGTTCACAATCTTTTTAAAATTAAAACTGACAAAGTGAATCAAATGYTGAAAGAAATTGATAAGCTTTTTTAAAACAATGAACTTCAAAAATTTATTATATACTCTTTCGAAACATTTTGATCATCATTGTTTGCTCCGAAATTTTCGCTGAGTATTGAACTCTGAAAGAACCTAGATTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28400</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>51741</contig_pos>
        <strand>+</strand>
        <context>CTTCAAAAAT[G/T]TATTATATAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATGCTGAAAGAAATTGATAAGCTTTTTTAAAACAATGAACTTCAAAAAT</left_flank>
        <right_flank>TATTATATACTCTTTCGAAACATTTTGATCATCATTGTTTGCTCCGAAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAGAGTGCTTTATATACAGGGAGATAGCTTTGCCTAATTATTGTCCATTTTTGGGTGACTCAGGTTTTGAAAAAAAGAAGGTTTTTCAATTTTATCATTATCAGAACTACAGCTTTACAAATAGAAAACAGTTTCAAAATTTCGAAACTTTGAAGATATCCAGTTTTTGCTGTAAGCCACTGACTCGGAAAATTTTGAATTAATTGGGGATGAAAATTGTTTTATAGTTTTTTATTCACATTTCAAAACTGTTTTGATAAACATTTATTATCAATGAATGGGAAAAACAGGAGGAATGAATCATTTCAGAACATGCTTTATTAATTTTTTTGCAGATAAATTATCATTCAAACTGTTCACAATTGGCCACAGTACTTATAATTATCTTTGAGAAACGTCTGAAAAATGTTCACAATCTTTTTAAAATTAAAACTGACAAAGTGAATCAAATGCTGAAAGAAATTGATAAGCTTTTTTAAAACAATGAACTTCAAAAATTTATTATATACTCTTTCGAAACATTTTGATCATCATTGTTTGCTCCGAAATTTTCGCTGAGTATTGAACTCTGAAAGAACCTAGATTGACGGAAAAAAGTTTAAATTGACAACGATGCGGAAATCAAATGAAACAAGACAGGAACGGAACAAAAAGATTGAAAAGAGCACGTACACTGATTCGGTCCATCTATATTGTTAAATTCCAAGTGATTCAATTTTCCGAAAGTCCAACGAGATCTTCAGAATTTCTGAGATAAAATTCTTTGAACATCTGCAGGTGCTTGAGATAGAAAAGCTGCTAAAAAACTCATAGTCTGAAAATTGTCGGAAACTTAGTTGCAACAGTGATCAATGATTTACTATCCATCCAGGAAGAGGAATATTCCAAGAACTTGTTCAACAACACATCAACAATGAAACGATGTTCTTGAGCATGTTCAAAATAAGCACAAAGAAAAACGGGTCCCCCTTCAAAACTGTTGAGTAGCGGGGTGTTTGG</canonical>
            <polymorphic>TTAGAGTGCTTTATATACAGGGAGATAGCTTTGCCTAATTATTGTCCATTTTTGGGTGACTCAGGTTTTGAAAAAAAGAAGGTTTTTCAATTTTATCATTATCAGAACTACAGCTTTACAAATAGAAAACAGTTTCAAAATTTCGAAACTTTGAAGATATCCAGTTTTTGCTGTAAGCCACTGACTCGGAAAATTTTGAATTAATTGGGGATGAAAATTGTTTTATAGTTTTTTATTCACATTTCAAAACTGTTTTGATAAACATTTATTATCAATGAATGGGAAAAACAGGAGGAATGAATCATTTCAGAACATGCTTTATTAATTTTTTTGCAGATAAATTATCATTCAAACTGTTCACAATTGGCCACAGTACTTATAATTATCTTTGAGAAACGTCTGAAAAATGTTCACAATCTTTTTAAAATTAAAACTGACAAAGTGAATCAAATGCTGAAAGAAATTGATAAGCTTTTTTAAAACAATGAACTTCAAAAATKTATTATATACTCTTTCGAAACATTTTGATCATCATTGTTTGCTCCGAAATTTTCGCTGAGTATTGAACTCTGAAAGAACCTAGATTGACGGAAAAAAGTTTAAATTGACAACGATGCGGAAATCAAATGAAACAAGACAGGAACGGAACAAAAAGATTGAAAAGAGCACGTACACTGATTCGGTCCATCTATATTGTTAAATTCCAAGTGATTCAATTTTCCGAAAGTCCAACGAGATCTTCAGAATTTCTGAGATAAAATTCTTTGAACATCTGCAGGTGCTTGAGATAGAAAAGCTGCTAAAAAACTCATAGTCTGAAAATTGTCGGAAACTTAGTTGCAACAGTGATCAATGATTTACTATCCATCCAGGAAGAGGAATATTCCAAGAACTTGTTCAACAACACATCAACAATGAAACGATGTTCTTGAGCATGTTCAAAATAAGCACAAAGAAAAACGGGTCCCCCTTCAAAACTGTTGAGTAGCGGGGTGTTTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>305 242 152 138 53 51 45 14</canonical_bands>
                <polymorphic_bands>356 242 152 138 53 45 14</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>180 108 97 62 55 53 52 51 50 45 36 36 35 30 22 19 16 15 14 13 7 4</canonical_bands>
                <polymorphic_bands>180 108 97 86 62 55 53 52 50 45 36 36 30 22 19 16 15 14 13 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTATCATTCAAACTGTTCACAA</pcr_primer_p1>
		<pcr_primer_p2>GTCAATCTAGGTTCTTTCAGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTATCATTCAAACTGTTCACAATTGGCCACAGTACTTATAATTATCTTTGAGAAACGTCTGAAAAATGTTCACAATCTTTTTAAAATTAAAACTGACAAAGTGAATCAAATGCTGAAAGAAATTGATAAGCTTTTTTAAAACAATGAACTTCAAAAATTTATTATATACTCTTTCGAAACATTTTGATCATCATTGTTTGCTCCGAAATTTTCGCTGAGTATTGAACTCTGAAAGAACCTAGATTGAC</canonical_amplicon>
		<polymorphic_amplicon>AATTATCATTCAAACTGTTCACAATTGGCCACAGTACTTATAATTATCTTTGAGAAACGTCTGAAAAATGTTCACAATCTTTTTAAAATTAAAACTGACAAAGTGAATCAAATGCTGAAAGAAATTGATAAGCTTTTTTAAAACAATGAACTTCAAAAATKTATTATATACTCTTTCGAAACATTTTGATCATCATTGTTTGCTCCGAAATTTTCGCTGAGTATTGAACTCTGAAAGAACCTAGATTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28401</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>51847</contig_pos>
        <strand>+</strand>
        <context>AAGTTTAAAT[C/T]GACAACGATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGAGTATTGAACTCTGAAAGAACCTAGATTGACGGAAAAAAGTTTAAAT</left_flank>
        <right_flank>GACAACGATGCGGAAATCAAATGAAACAAGACAGGAACGGAACAAAAAGA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTACAGCTTTACAAATAGAAAACAGTTTCAAAATTTCGAAACTTTGAAGATATCCAGTTTTTGCTGTAAGCCACTGACTCGGAAAATTTTGAATTAATTGGGGATGAAAATTGTTTTATAGTTTTTTATTCACATTTCAAAACTGTTTTGATAAACATTTATTATCAATGAATGGGAAAAACAGGAGGAATGAATCATTTCAGAACATGCTTTATTAATTTTTTTGCAGATAAATTATCATTCAAACTGTTCACAATTGGCCACAGTACTTATAATTATCTTTGAGAAACGTCTGAAAAATGTTCACAATCTTTTTAAAATTAAAACTGACAAAGTGAATCAAATGCTGAAAGAAATTGATAAGCTTTTTTAAAACAATGAACTTCAAAAATTTATTATATACTCTTTCGAAACATTTTGATCATCATTGTTTGCTCCGAAATTTTCGCTGAGTATTGAACTCTGAAAGAACCTAGATTGACGGAAAAAAGTTTAAATTGACAACGATGCGGAAATCAAATGAAACAAGACAGGAACGGAACAAAAAGATTGAAAAGAGCACGTACACTGATTCGGTCCATCTATATTGTTAAATTCCAAGTGATTCAATTTTCCGAAAGTCCAACGAGATCTTCAGAATTTCTGAGATAAAATTCTTTGAACATCTGCAGGTGCTTGAGATAGAAAAGCTGCTAAAAAACTCATAGTCTGAAAATTGTCGGAAACTTAGTTGCAACAGTGATCAATGATTTACTATCCATCCAGGAAGAGGAATATTCCAAGAACTTGTTCAACAACACATCAACAATGAAACGATGTTCTTGAGCATGTTCAAAATAAGCACAAAGAAAAACGGGTCCCCCTTCAAAACTGTTGAGTAGCGGGGTGTTTGGGACAAGTTTTATTGAATTCTACTCCCACGAAAAATAAAATACATAGAAGAGAGAATGATGCTGGTCTTCTGAAGTGAGAGATACATTCTTCTTATCGTTTTTCTAT</canonical>
            <polymorphic>ACTACAGCTTTACAAATAGAAAACAGTTTCAAAATTTCGAAACTTTGAAGATATCCAGTTTTTGCTGTAAGCCACTGACTCGGAAAATTTTGAATTAATTGGGGATGAAAATTGTTTTATAGTTTTTTATTCACATTTCAAAACTGTTTTGATAAACATTTATTATCAATGAATGGGAAAAACAGGAGGAATGAATCATTTCAGAACATGCTTTATTAATTTTTTTGCAGATAAATTATCATTCAAACTGTTCACAATTGGCCACAGTACTTATAATTATCTTTGAGAAACGTCTGAAAAATGTTCACAATCTTTTTAAAATTAAAACTGACAAAGTGAATCAAATGCTGAAAGAAATTGATAAGCTTTTTTAAAACAATGAACTTCAAAAATTTATTATATACTCTTTCGAAACATTTTGATCATCATTGTTTGCTCCGAAATTTTCGCTGAGTATTGAACTCTGAAAGAACCTAGATTGACGGAAAAAAGTTTAAATYGACAACGATGCGGAAATCAAATGAAACAAGACAGGAACGGAACAAAAAGATTGAAAAGAGCACGTACACTGATTCGGTCCATCTATATTGTTAAATTCCAAGTGATTCAATTTTCCGAAAGTCCAACGAGATCTTCAGAATTTCTGAGATAAAATTCTTTGAACATCTGCAGGTGCTTGAGATAGAAAAGCTGCTAAAAAACTCATAGTCTGAAAATTGTCGGAAACTTAGTTGCAACAGTGATCAATGATTTACTATCCATCCAGGAAGAGGAATATTCCAAGAACTTGTTCAACAACACATCAACAATGAAACGATGTTCTTGAGCATGTTCAAAATAAGCACAAAGAAAAACGGGTCCCCCTTCAAAACTGTTGAGTAGCGGGGTGTTTGGGACAAGTTTTATTGAATTCTACTCCCACGAAAAATAAAATACATAGAAGAGAGAATGATGCTGGTCTTCTGAAGTGAGAGATACATTCTTCTTATCGTTTTTCTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>194 108 97 92 62 55 53 51 45 36 35 32 30 22 19 16 15 14 13 7 4</canonical_bands>
                <polymorphic_bands>194 152 108 92 62 53 51 45 36 35 32 30 22 19 16 15 14 13 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTGACAAAGTGAATCAAATG</pcr_primer_p1>
		<pcr_primer_p2>AATCAGTGTACGTGCTCTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACTGACAAAGTGAATCAAATGCTGAAAGAAATTGATAAGCTTTTTTAAAACAATGAACTTCAAAAATTTATTATATACTCTTTCGAAACATTTTGATCATCATTGTTTGCTCCGAAATTTTCGCTGAGTATTGAACTCTGAAAGAACCTAGATTGACGGAAAAAAGTTTAAATTGACAACGATGCGGAAATCAAATGAAACAAGACAGGAACGGAACAAAAAGATTGAAAAGAGCACGTACACTGATT</canonical_amplicon>
		<polymorphic_amplicon>AAACTGACAAAGTGAATCAAATGCTGAAAGAAATTGATAAGCTTTTTTAAAACAATGAACTTCAAAAATTTATTATATACTCTTTCGAAACATTTTGATCATCATTGTTTGCTCCGAAATTTTCGCTGAGTATTGAACTCTGAAAGAACCTAGATTGACGGAAAAAAGTTTAAATYGACAACGATGCGGAAATCAAATGAAACAAGACAGGAACGGAACAAAAAGATTGAAAAGAGCACGTACACTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28402</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>124191</contig_pos>
        <strand></strand>
        <context>cacccttcaa[T/C]atttttaaag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AACTCTGGGAATGCAACGTTTTCATTTTGAACCTATTTAACACCCTTCAA</left_flank>
        <right_flank>ATTTTTAAAGTTATTGAAAACTTGATAACCGAGCTTTAGACTCCTGAACG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAAGGATGTTGACTCCCGAGCCACTGTACATCCCTTTGAATTTTGCGAAGCTTGATGCTCCGCCGGCTCTCCATGTTTGTTTCGCACAGTCAGCACTGAAAATTTTCATTTATTATTGCTTTACGACCTGAAAGTCGGTTTATGTAGAATATATACAGTACCTGTCAATGAGAACTACAACAACGTGTTTTTCTTTCGATTTCCGATCATTTTGACTATTTTCAAATGCCTGGTGCTCGTGTTTCGAATTCCGATAATTTTGAAAACTTTGGGTGTAGAACCAACCTAGCTTGAAAACTTAGATTTTGAAATTTTCGCAAAATTCTAGTTTTTCAGCTATTTGCCAAATTCTGGAAGATACTTTTTTTCACGTTTCCAGTACAAAACAAGCAGAAGGGGTGACTTTCAAAAACCGGCAAATAGCTGAAAACTTTGGTATTTTCAGAGAACTCTGGGAATGCAACGTTTTCATTTTGAACCTATTTAACACCCTTCAATATTTTTAAAGTTATTGAAAACTTGATAACCGAGCTTTAGACTCCTGAACGTGGTCCAATGGCTATACTCAATTGAAAGCACTTTTTTCTCTTATTGACCGATATTTTCAATTGCAAATTTATTTCCTGCTACTTACATTCCTGTATATTGAAGTTTTCCATCAGCTCCTACTGTCTGGTTTTGTAACCGAGTTTTAACCAAGTCGATCGGAAAGACACACGACACTCCGATGATACCCGCAAGTCCTCCATTCATGATTTTTGGCACATAACTGCGATTAACGGTTTTCAAGGAAGTCTTGATGATTCGTAAAACTCACGAAAAATTTTGTGGCTTTTTGTCCTCACTCATCTTTGCTAAGTTATCTGAAAACGTAGAAATTAGTGAAAGCTAATAGAGAAAATAAGATAAAGAAGTATGAAAAAGAAGAGGGAAACTTCTCTAATTGACGAAATGAATAAATCCTGAAAATAAATAAATTATTTATTTTTATCCCGTAA</canonical>
            <polymorphic>TAAAAGGATGTTGACTCCCGAGCCACTGTACATCCCTTTGAATTTTGCGAAGCTTGATGCTCCGCCGGCTCTCCATGTTTGTTTCGCACAGTCAGCACTGAAAATTTTCATTTATTATTGCTTTACGACCTGAAAGTCGGTTTATGTAGAATATATACAGTACCTGTCAATGAGAACTACAACAACGTGTTTTTCTTTCGATTTCCGATCATTTTGACTATTTTCAAATGCCTGGTGCTCGTGTTTCGAATTCCGATAATTTTGAAAACTTTGGGTGTAGAACCAACCTAGCTTGAAAACTTAGATTTTGAAATTTTCGCAAAATTCTAGTTTTTCAGCTATTTGCCAAATTCTGGAAGATACTTTTTTTCACGTTTCCAGTACAAAACAAGCAGAAGGGGTGACTTTCAAAAACCGGCAAATAGCTGAAAACTTTGGTATTTTCAGAGAACTCTGGGAATGCAACGTTTTCATTTTGAACCTATTTAACACCCTTCAAYATTTTTAAAGTTATTGAAAACTTGATAACCGAGCTTTAGACTCCTGAACGTGGTCCAATGGCTATACTCAATTGAAAGCACTTTTTTCTCTTATTGACCGATATTTTCAATTGCAAATTTATTTCCTGCTACTTACATTCCTGTATATTGAAGTTTTCCATCAGCTCCTACTGTCTGGTTTTGTAACCGAGTTTTAACCAAGTCGATCGGAAAGACACACGACACTCCGATGATACCCGCAAGTCCTCCATTCATGATTTTTGGCACATAACTGCGATTAACGGTTTTCAAGGAAGTCTTGATGATTCGTAAAACTCACGAAAAATTTTGTGGCTTTTTGTCCTCACTCATCTTTGCTAAGTTATCTGAAAACGTAGAAATTAGTGAAAGCTAATAGAGAAAATAAGATAAAGAAGTATGAAAAAGAAGAGGGAAACTTCTCTAATTGACGAAATGAATAAATCCTGAAAATAAATAAATTATTTATTTTTATCCCGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAAAGTCGGTTTATGTAGAAT</pcr_primer_p1>
		<pcr_primer_p2>GGAATGTAAGTAGCAGGAAATAA</pcr_primer_p2>
		<pcr_amplicon_size>512</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAGTCGGTTTATGTAGAATATATACAGTACCTGTCAATGAGAACTACAACAACGTGTTTTTCTTTCGATTTCCGATCATTTTGACTATTTTCAAATGCCTGGTGCTCGTGTTTCGAATTCCGATAATTTTGAAAACTTTGGGTGTAGAACCAACCTAGCTTGAAAACTTAGATTTTGAAATTTTCGCAAAATTCTAGTTTTTCAGCTATTTGCCAAATTCTGGAAGATACTTTTTTTCACGTTTCCAGTACAAAACAAGCAGAAGGGGTGACTTTCAAAAACCGGCAAATAGCTGAAAACTTTGGTATTTTCAGAGAACTCTGGGAATGCAACGTTTTCATTTTGAACCTATTTAACACCCTTCAATATTTTTAAAGTTATTGAAAACTTGATAACCGAGCTTTAGACTCCTGAACGTGGTCCAATGGCTATACTCAATTGAAAGCACTTTTTTCTCTTATTGACCGATATTTTCAATTGCAAATTTATTTCCTGCTACTTACATTCC</canonical_amplicon>
		<polymorphic_amplicon>CTGAAAGTCGGTTTATGTAGAATATATACAGTACCTGTCAATGAGAACTACAACAACGTGTTTTTCTTTCGATTTCCGATCATTTTGACTATTTTCAAATGCCTGGTGCTCGTGTTTCGAATTCCGATAATTTTGAAAACTTTGGGTGTAGAACCAACCTAGCTTGAAAACTTAGATTTTGAAATTTTCGCAAAATTCTAGTTTTTCAGCTATTTGCCAAATTCTGGAAGATACTTTTTTTCACGTTTCCAGTACAAAACAAGCAGAAGGGGTGACTTTCAAAAACCGGCAAATAGCTGAAAACTTTGGTATTTTCAGAGAACTCTGGGAATGCAACGTTTTCATTTTGAACCTATTTAACACCCTTCAAYATTTTTAAAGTTATTGAAAACTTGATAACCGAGCTTTAGACTCCTGAACGTGGTCCAATGGCTATACTCAATTGAAAGCACTTTTTTCTCTTATTGACCGATATTTTCAATTGCAAATTTATTTCCTGCTACTTACATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28403</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>124208</contig_pos>
        <strand></strand>
        <context>aaagttattg[A/G]aaacttgata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTTCATTTTGAACCTATTTAACACCCTTCAATATTTTTAAAGTTATTG</left_flank>
        <right_flank>AAACTTGATAACCGAGCTTTAGACTCCTGAACGTGGTCCAATGGCTATAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGAGCCACTGTACATCCCTTTGAATTTTGCGAAGCTTGATGCTCCGCCGGCTCTCCATGTTTGTTTCGCACAGTCAGCACTGAAAATTTTCATTTATTATTGCTTTACGACCTGAAAGTCGGTTTATGTAGAATATATACAGTACCTGTCAATGAGAACTACAACAACGTGTTTTTCTTTCGATTTCCGATCATTTTGACTATTTTCAAATGCCTGGTGCTCGTGTTTCGAATTCCGATAATTTTGAAAACTTTGGGTGTAGAACCAACCTAGCTTGAAAACTTAGATTTTGAAATTTTCGCAAAATTCTAGTTTTTCAGCTATTTGCCAAATTCTGGAAGATACTTTTTTTCACGTTTCCAGTACAAAACAAGCAGAAGGGGTGACTTTCAAAAACCGGCAAATAGCTGAAAACTTTGGTATTTTCAGAGAACTCTGGGAATGCAACGTTTTCATTTTGAACCTATTTAACACCCTTCAATATTTTTAAAGTTATTGAAAACTTGATAACCGAGCTTTAGACTCCTGAACGTGGTCCAATGGCTATACTCAATTGAAAGCACTTTTTTCTCTTATTGACCGATATTTTCAATTGCAAATTTATTTCCTGCTACTTACATTCCTGTATATTGAAGTTTTCCATCAGCTCCTACTGTCTGGTTTTGTAACCGAGTTTTAACCAAGTCGATCGGAAAGACACACGACACTCCGATGATACCCGCAAGTCCTCCATTCATGATTTTTGGCACATAACTGCGATTAACGGTTTTCAAGGAAGTCTTGATGATTCGTAAAACTCACGAAAAATTTTGTGGCTTTTTGTCCTCACTCATCTTTGCTAAGTTATCTGAAAACGTAGAAATTAGTGAAAGCTAATAGAGAAAATAAGATAAAGAAGTATGAAAAAGAAGAGGGAAACTTCTCTAATTGACGAAATGAATAAATCCTGAAAATAAATAAATTATTTATTTTTATCCCGTAACATATAATCAACAGCTT</canonical>
            <polymorphic>CCGAGCCACTGTACATCCCTTTGAATTTTGCGAAGCTTGATGCTCCGCCGGCTCTCCATGTTTGTTTCGCACAGTCAGCACTGAAAATTTTCATTTATTATTGCTTTACGACCTGAAAGTCGGTTTATGTAGAATATATACAGTACCTGTCAATGAGAACTACAACAACGTGTTTTTCTTTCGATTTCCGATCATTTTGACTATTTTCAAATGCCTGGTGCTCGTGTTTCGAATTCCGATAATTTTGAAAACTTTGGGTGTAGAACCAACCTAGCTTGAAAACTTAGATTTTGAAATTTTCGCAAAATTCTAGTTTTTCAGCTATTTGCCAAATTCTGGAAGATACTTTTTTTCACGTTTCCAGTACAAAACAAGCAGAAGGGGTGACTTTCAAAAACCGGCAAATAGCTGAAAACTTTGGTATTTTCAGAGAACTCTGGGAATGCAACGTTTTCATTTTGAACCTATTTAACACCCTTCAATATTTTTAAAGTTATTGRAAACTTGATAACCGAGCTTTAGACTCCTGAACGTGGTCCAATGGCTATACTCAATTGAAAGCACTTTTTTCTCTTATTGACCGATATTTTCAATTGCAAATTTATTTCCTGCTACTTACATTCCTGTATATTGAAGTTTTCCATCAGCTCCTACTGTCTGGTTTTGTAACCGAGTTTTAACCAAGTCGATCGGAAAGACACACGACACTCCGATGATACCCGCAAGTCCTCCATTCATGATTTTTGGCACATAACTGCGATTAACGGTTTTCAAGGAAGTCTTGATGATTCGTAAAACTCACGAAAAATTTTGTGGCTTTTTGTCCTCACTCATCTTTGCTAAGTTATCTGAAAACGTAGAAATTAGTGAAAGCTAATAGAGAAAATAAGATAAAGAAGTATGAAAAAGAAGAGGGAAACTTCTCTAATTGACGAAATGAATAAATCCTGAAAATAAATAAATTATTTATTTTTATCCCGTAACATATAATCAACAGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAAAGTCGGTTTATGTAGAAT</pcr_primer_p1>
		<pcr_primer_p2>GGAATGTAAGTAGCAGGAAATAA</pcr_primer_p2>
		<pcr_amplicon_size>512</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAGTCGGTTTATGTAGAATATATACAGTACCTGTCAATGAGAACTACAACAACGTGTTTTTCTTTCGATTTCCGATCATTTTGACTATTTTCAAATGCCTGGTGCTCGTGTTTCGAATTCCGATAATTTTGAAAACTTTGGGTGTAGAACCAACCTAGCTTGAAAACTTAGATTTTGAAATTTTCGCAAAATTCTAGTTTTTCAGCTATTTGCCAAATTCTGGAAGATACTTTTTTTCACGTTTCCAGTACAAAACAAGCAGAAGGGGTGACTTTCAAAAACCGGCAAATAGCTGAAAACTTTGGTATTTTCAGAGAACTCTGGGAATGCAACGTTTTCATTTTGAACCTATTTAACACCCTTCAATATTTTTAAAGTTATTGAAAACTTGATAACCGAGCTTTAGACTCCTGAACGTGGTCCAATGGCTATACTCAATTGAAAGCACTTTTTTCTCTTATTGACCGATATTTTCAATTGCAAATTTATTTCCTGCTACTTACATTCC</canonical_amplicon>
		<polymorphic_amplicon>CTGAAAGTCGGTTTATGTAGAATATATACAGTACCTGTCAATGAGAACTACAACAACGTGTTTTTCTTTCGATTTCCGATCATTTTGACTATTTTCAAATGCCTGGTGCTCGTGTTTCGAATTCCGATAATTTTGAAAACTTTGGGTGTAGAACCAACCTAGCTTGAAAACTTAGATTTTGAAATTTTCGCAAAATTCTAGTTTTTCAGCTATTTGCCAAATTCTGGAAGATACTTTTTTTCACGTTTCCAGTACAAAACAAGCAGAAGGGGTGACTTTCAAAAACCGGCAAATAGCTGAAAACTTTGGTATTTTCAGAGAACTCTGGGAATGCAACGTTTTCATTTTGAACCTATTTAACACCCTTCAATATTTTTAAAGTTATTGRAAACTTGATAACCGAGCTTTAGACTCCTGAACGTGGTCCAATGGCTATACTCAATTGAAAGCACTTTTTTCTCTTATTGACCGATATTTTCAATTGCAAATTTATTTCCTGCTACTTACATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28404</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>124228</contig_pos>
        <strand></strand>
        <context>aaccgagctt[T/C]agactcctga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAACACCCTTCAATATTTTTAAAGTTATTGAAAACTTGATAACCGAGCTT</left_flank>
        <right_flank>AGACTCCTGAACGTGGTCCAATGGCTATACTCAATTGAAAGCACTTTTTT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAATTTTGCGAAGCTTGATGCTCCGCCGGCTCTCCATGTTTGTTTCGCACAGTCAGCACTGAAAATTTTCATTTATTATTGCTTTACGACCTGAAAGTCGGTTTATGTAGAATATATACAGTACCTGTCAATGAGAACTACAACAACGTGTTTTTCTTTCGATTTCCGATCATTTTGACTATTTTCAAATGCCTGGTGCTCGTGTTTCGAATTCCGATAATTTTGAAAACTTTGGGTGTAGAACCAACCTAGCTTGAAAACTTAGATTTTGAAATTTTCGCAAAATTCTAGTTTTTCAGCTATTTGCCAAATTCTGGAAGATACTTTTTTTCACGTTTCCAGTACAAAACAAGCAGAAGGGGTGACTTTCAAAAACCGGCAAATAGCTGAAAACTTTGGTATTTTCAGAGAACTCTGGGAATGCAACGTTTTCATTTTGAACCTATTTAACACCCTTCAATATTTTTAAAGTTATTGAAAACTTGATAACCGAGCTTTAGACTCCTGAACGTGGTCCAATGGCTATACTCAATTGAAAGCACTTTTTTCTCTTATTGACCGATATTTTCAATTGCAAATTTATTTCCTGCTACTTACATTCCTGTATATTGAAGTTTTCCATCAGCTCCTACTGTCTGGTTTTGTAACCGAGTTTTAACCAAGTCGATCGGAAAGACACACGACACTCCGATGATACCCGCAAGTCCTCCATTCATGATTTTTGGCACATAACTGCGATTAACGGTTTTCAAGGAAGTCTTGATGATTCGTAAAACTCACGAAAAATTTTGTGGCTTTTTGTCCTCACTCATCTTTGCTAAGTTATCTGAAAACGTAGAAATTAGTGAAAGCTAATAGAGAAAATAAGATAAAGAAGTATGAAAAAGAAGAGGGAAACTTCTCTAATTGACGAAATGAATAAATCCTGAAAATAAATAAATTATTTATTTTTATCCCGTAACATATAATCAACAGCTTTGAAAAACTAAATGAAAATG</canonical>
            <polymorphic>TTGAATTTTGCGAAGCTTGATGCTCCGCCGGCTCTCCATGTTTGTTTCGCACAGTCAGCACTGAAAATTTTCATTTATTATTGCTTTACGACCTGAAAGTCGGTTTATGTAGAATATATACAGTACCTGTCAATGAGAACTACAACAACGTGTTTTTCTTTCGATTTCCGATCATTTTGACTATTTTCAAATGCCTGGTGCTCGTGTTTCGAATTCCGATAATTTTGAAAACTTTGGGTGTAGAACCAACCTAGCTTGAAAACTTAGATTTTGAAATTTTCGCAAAATTCTAGTTTTTCAGCTATTTGCCAAATTCTGGAAGATACTTTTTTTCACGTTTCCAGTACAAAACAAGCAGAAGGGGTGACTTTCAAAAACCGGCAAATAGCTGAAAACTTTGGTATTTTCAGAGAACTCTGGGAATGCAACGTTTTCATTTTGAACCTATTTAACACCCTTCAATATTTTTAAAGTTATTGAAAACTTGATAACCGAGCTTYAGACTCCTGAACGTGGTCCAATGGCTATACTCAATTGAAAGCACTTTTTTCTCTTATTGACCGATATTTTCAATTGCAAATTTATTTCCTGCTACTTACATTCCTGTATATTGAAGTTTTCCATCAGCTCCTACTGTCTGGTTTTGTAACCGAGTTTTAACCAAGTCGATCGGAAAGACACACGACACTCCGATGATACCCGCAAGTCCTCCATTCATGATTTTTGGCACATAACTGCGATTAACGGTTTTCAAGGAAGTCTTGATGATTCGTAAAACTCACGAAAAATTTTGTGGCTTTTTGTCCTCACTCATCTTTGCTAAGTTATCTGAAAACGTAGAAATTAGTGAAAGCTAATAGAGAAAATAAGATAAAGAAGTATGAAAAAGAAGAGGGAAACTTCTCTAATTGACGAAATGAATAAATCCTGAAAATAAATAAATTATTTATTTTTATCCCGTAACATATAATCAACAGCTTTGAAAAACTAAATGAAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAAAGTCGGTTTATGTAGAAT</pcr_primer_p1>
		<pcr_primer_p2>GGAATGTAAGTAGCAGGAAATAA</pcr_primer_p2>
		<pcr_amplicon_size>512</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAGTCGGTTTATGTAGAATATATACAGTACCTGTCAATGAGAACTACAACAACGTGTTTTTCTTTCGATTTCCGATCATTTTGACTATTTTCAAATGCCTGGTGCTCGTGTTTCGAATTCCGATAATTTTGAAAACTTTGGGTGTAGAACCAACCTAGCTTGAAAACTTAGATTTTGAAATTTTCGCAAAATTCTAGTTTTTCAGCTATTTGCCAAATTCTGGAAGATACTTTTTTTCACGTTTCCAGTACAAAACAAGCAGAAGGGGTGACTTTCAAAAACCGGCAAATAGCTGAAAACTTTGGTATTTTCAGAGAACTCTGGGAATGCAACGTTTTCATTTTGAACCTATTTAACACCCTTCAATATTTTTAAAGTTATTGAAAACTTGATAACCGAGCTTTAGACTCCTGAACGTGGTCCAATGGCTATACTCAATTGAAAGCACTTTTTTCTCTTATTGACCGATATTTTCAATTGCAAATTTATTTCCTGCTACTTACATTCC</canonical_amplicon>
		<polymorphic_amplicon>CTGAAAGTCGGTTTATGTAGAATATATACAGTACCTGTCAATGAGAACTACAACAACGTGTTTTTCTTTCGATTTCCGATCATTTTGACTATTTTCAAATGCCTGGTGCTCGTGTTTCGAATTCCGATAATTTTGAAAACTTTGGGTGTAGAACCAACCTAGCTTGAAAACTTAGATTTTGAAATTTTCGCAAAATTCTAGTTTTTCAGCTATTTGCCAAATTCTGGAAGATACTTTTTTTCACGTTTCCAGTACAAAACAAGCAGAAGGGGTGACTTTCAAAAACCGGCAAATAGCTGAAAACTTTGGTATTTTCAGAGAACTCTGGGAATGCAACGTTTTCATTTTGAACCTATTTAACACCCTTCAATATTTTTAAAGTTATTGAAAACTTGATAACCGAGCTTYAGACTCCTGAACGTGGTCCAATGGCTATACTCAATTGAAAGCACTTTTTTCTCTTATTGACCGATATTTTCAATTGCAAATTTATTTCCTGCTACTTACATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28405</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>125187</contig_pos>
        <strand>+</strand>
        <context>TTGTGGCGTA[C/G]ACACCTCCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATGGATAACAAGAATTGAACAATGTTGTTGATAATAGTGCTTGTGGCGTA</left_flank>
        <right_flank>ACACCTCCAAGGATCGAACAAATGCGGATGAGATAGGAGAAGAGGGTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAACATATAATCAACAGCTTTGAAAAACTAAATGAAAATGCTATAAATAAAAAAAATCAAAAAAAGCGAAATCGATACTTAGATGACCAGAGACACAATGAGTTAATGTATACATTTAGATGACAAGAAACCCATGGAGAATGTTTGAAAATTTGTTGAAAAAGACGATTGCAAATTGAAATTGCAACACTATCCAAGAGATGAACAAACAGTGTTATCAGAAACAATGCTTGTTATCATTCTATTGTTATCGATAAAATAATGGAAAATCACTCGTTTTCTTGGAACTTTTCTAGACGTGGCTAAGAGACAGAATGACAAGAAAGAGGGGGGAAATCAATGCACTTGCATGTTGGCATCCATCACAAATGCAGAGTGAGAGGAATCAGTTGAGAGACTTGCCCTAGAATTCCGTAAATGATGGAACTGATCCTTGTCGGTGTAAACCATGGATAACAAGAATTGAACAATGTTGTTGATAATAGTGCTTGTGGCGTAGACACCTCCAAGGATCGAACAAATGCGGATGAGATAGGAGAAGAGGGTTCTGAAATAGGATGTTAGAGGGTTGCGACTTGAGGTTTAGTCACATTTTGGTCTATGTCTTTGAGATCACCTTGAAAAGATAAAAAGTATAATGTCTAAGTTTTTCGAGAAATTTTGATGGAGATAACCGGTTCTTATCAATCGAAAATAAATAGATTTTTGTCTAATGGTTTTTGATGTGATCTTAAATCAAAGATCGCGAAAATCAGCTGAATTAATAGGGAGTTTATAATTTCGGCTTTGAAACATTAGACGTGTGAAACAATTTCTTGTAAATTGAAACATTCCAAAAAAAAAAATTCCAAAATTATGAAATTTTGGAAACTTGGAAATTCAGAAAATTCCGATTTTTTCTTTTTGCAATTTCGGACACCATGAGATTTTTTATTCAATTTCAGAATACCGTATCCGAAGGACATTCCATTGCTTCAATGTACTTCCAGAAGGCCCTTC</canonical>
            <polymorphic>GTAACATATAATCAACAGCTTTGAAAAACTAAATGAAAATGCTATAAATAAAAAAAATCAAAAAAAGCGAAATCGATACTTAGATGACCAGAGACACAATGAGTTAATGTATACATTTAGATGACAAGAAACCCATGGAGAATGTTTGAAAATTTGTTGAAAAAGACGATTGCAAATTGAAATTGCAACACTATCCAAGAGATGAACAAACAGTGTTATCAGAAACAATGCTTGTTATCATTCTATTGTTATCGATAAAATAATGGAAAATCACTCGTTTTCTTGGAACTTTTCTAGACGTGGCTAAGAGACAGAATGACAAGAAAGAGGGGGGAAATCAATGCACTTGCATGTTGGCATCCATCACAAATGCAGAGTGAGAGGAATCAGTTGAGAGACTTGCCCTAGAATTCCGTAAATGATGGAACTGATCCTTGTCGGTGTAAACCATGGATAACAAGAATTGAACAATGTTGTTGATAATAGTGCTTGTGGCGTASACACCTCCAAGGATCGAACAAATGCGGATGAGATAGGAGAAGAGGGTTCTGAAATAGGATGTTAGAGGGTTGCGACTTGAGGTTTAGTCACATTTTGGTCTATGTCTTTGAGATCACCTTGAAAAGATAAAAAGTATAATGTCTAAGTTTTTCGAGAAATTTTGATGGAGATAACCGGTTCTTATCAATCGAAAATAAATAGATTTTTGTCTAATGGTTTTTGATGTGATCTTAAATCAAAGATCGCGAAAATCAGCTGAATTAATAGGGAGTTTATAATTTCGGCTTTGAAACATTAGACGTGTGAAACAATTTCTTGTAAATTGAAACATTCCAAAAAAAAAAATTCCAAAATTATGAAATTTTGGAAACTTGGAAATTCAGAAAATTCCGATTTTTTCTTTTTGCAATTTCGGACACCATGAGATTTTTTATTCAATTTCAGAATACCGTATCCGAAGGACATTCCATTGCTTCAATGTACTTCCAGAAGGCCCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 388 110</canonical_bands>
                <polymorphic_bands>890 110</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGTGAGAGGAATCAGTTGAG</pcr_primer_p1>
		<pcr_primer_p2>TCAAGGTGATCTCAAAGACATAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGAGTGAGAGGAATCAGTTGAGAGACTTGCCCTAGAATTCCGTAAATGATGGAACTGATCCTTGTCGGTGTAAACCATGGATAACAAGAATTGAACAATGTTGTTGATAATAGTGCTTGTGGCGTAGACACCTCCAAGGATCGAACAAATGCGGATGAGATAGGAGAAGAGGGTTCTGAAATAGGATGTTAGAGGGTTGCGACTTGAGGTTTAGTCACATTTTGGTCTATGTCTTTGAGATCACCTTGA</canonical_amplicon>
		<polymorphic_amplicon>AGAGTGAGAGGAATCAGTTGAGAGACTTGCCCTAGAATTCCGTAAATGATGGAACTGATCCTTGTCGGTGTAAACCATGGATAACAAGAATTGAACAATGTTGTTGATAATAGTGCTTGTGGCGTASACACCTCCAAGGATCGAACAAATGCGGATGAGATAGGAGAAGAGGGTTCTGAAATAGGATGTTAGAGGGTTGCGACTTGAGGTTTAGTCACATTTTGGTCTATGTCTTTGAGATCACCTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28406</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>125507</contig_pos>
        <strand></strand>
        <context>CAATTTCTTG[T/A]AAATTGAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GAGTTTATAATTTCGGCTTTGAAACATTAGACGTGTGAAACAATTTCTTG</left_flank>
        <right_flank>AAATTGAAACATTCCAAAAAAAAAAATTCCAAAATTATGAAATTTTGGAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAAGAGGGGGGAAATCAATGCACTTGCATGTTGGCATCCATCACAAATGCAGAGTGAGAGGAATCAGTTGAGAGACTTGCCCTAGAATTCCGTAAATGATGGAACTGATCCTTGTCGGTGTAAACCATGGATAACAAGAATTGAACAATGTTGTTGATAATAGTGCTTGTGGCGTAGACACCTCCAAGGATCGAACAAATGCGGATGAGATAGGAGAAGAGGGTTCTGAAATAGGATGTTAGAGGGTTGCGACTTGAGGTTTAGTCACATTTTGGTCTATGTCTTTGAGATCACCTTGAAAAGATAAAAAGTATAATGTCTAAGTTTTTCGAGAAATTTTGATGGAGATAACCGGTTCTTATCAATCGAAAATAAATAGATTTTTGTCTAATGGTTTTTGATGTGATCTTAAATCAAAGATCGCGAAAATCAGCTGAATTAATAGGGAGTTTATAATTTCGGCTTTGAAACATTAGACGTGTGAAACAATTTCTTGTAAATTGAAACATTCCAAAAAAAAAAATTCCAAAATTATGAAATTTTGGAAACTTGGAAATTCAGAAAATTCCGATTTTTTCTTTTTGCAATTTCGGACACCATGAGATTTTTTATTCAATTTCAGAATACCGTATCCGAAGGACATTCCATTGCTTCAATGTACTTCCAGAAGGCCCTTCTATCACAGGATTCTTTCAATTAGAGATGTCCTTCTATTTTTCCCGCCATTTTTTTTACGAAAACTGCTATCGAAAAATTCTAGTTCAAGCTTTGACGAAATCCTATAAACTGTATTTGAGCATTTAACTGTAATTGAGCAAATTTCTCGAGCAAAAGAATGTTTCAAAGAATTTCTGTGAAATGTTTAGAACTTTAGAATATTGCACACAGAAAATGAACAATAATCTTTAAATTCGAACAAGACATTTTGCAGGAAGCTTTTCTATTTTAACAGCCTTTCTAATAACGGTTTCATGGAAATGGGAAATAGAAAGAGGAG</canonical>
            <polymorphic>AAGAAAGAGGGGGGAAATCAATGCACTTGCATGTTGGCATCCATCACAAATGCAGAGTGAGAGGAATCAGTTGAGAGACTTGCCCTAGAATTCCGTAAATGATGGAACTGATCCTTGTCGGTGTAAACCATGGATAACAAGAATTGAACAATGTTGTTGATAATAGTGCTTGTGGCGTAGACACCTCCAAGGATCGAACAAATGCGGATGAGATAGGAGAAGAGGGTTCTGAAATAGGATGTTAGAGGGTTGCGACTTGAGGTTTAGTCACATTTTGGTCTATGTCTTTGAGATCACCTTGAAAAGATAAAAAGTATAATGTCTAAGTTTTTCGAGAAATTTTGATGGAGATAACCGGTTCTTATCAATCGAAAATAAATAGATTTTTGTCTAATGGTTTTTGATGTGATCTTAAATCAAAGATCGCGAAAATCAGCTGAATTAATAGGGAGTTTATAATTTCGGCTTTGAAACATTAGACGTGTGAAACAATTTCTTGWAAATTGAAACATTCCAAAAAAAAAAATTCCAAAATTATGAAATTTTGGAAACTTGGAAATTCAGAAAATTCCGATTTTTTCTTTTTGCAATTTCGGACACCATGAGATTTTTTATTCAATTTCAGAATACCGTATCCGAAGGACATTCCATTGCTTCAATGTACTTCCAGAAGGCCCTTCTATCACAGGATTCTTTCAATTAGAGATGTCCTTCTATTTTTCCCGCCATTTTTTTTACGAAAACTGCTATCGAAAAATTCTAGTTCAAGCTTTGACGAAATCCTATAAACTGTATTTGAGCATTTAACTGTAATTGAGCAAATTTCTCGAGCAAAAGAATGTTTCAAAGAATTTCTGTGAAATGTTTAGAACTTTAGAATATTGCACACAGAAAATGAACAATAATCTTTAAATTCGAACAAGACATTTTGCAGGAAGCTTTTCTATTTTAACAGCCTTTCTAATAACGGTTTCATGGAAATGGGAAATAGAAAGAGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGTCTAATGGTTTTTGATGT</pcr_primer_p1>
		<pcr_primer_p2>ACGGTATTCTGAAATTGAATAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTGTCTAATGGTTTTTGATGTGATCTTAAATCAAAGATCGCGAAAATCAGCTGAATTAATAGGGAGTTTATAATTTCGGCTTTGAAACATTAGACGTGTGAAACAATTTCTTGTAAATTGAAACATTCCAAAAAAAAAAATTCCAAAATTATGAAATTTTGGAAACTTGGAAATTCAGAAAATTCCGATTTTTTCTTTTTGCAATTTCGGACACCATGAGATTTTTTATTCAATTTCAGAATACCGT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGTCTAATGGTTTTTGATGTGATCTTAAATCAAAGATCGCGAAAATCAGCTGAATTAATAGGGAGTTTATAATTTCGGCTTTGAAACATTAGACGTGTGAAACAATTTCTTGWAAATTGAAACATTCCAAAAAAAAAAATTCCAAAATTATGAAATTTTGGAAACTTGGAAATTCAGAAAATTCCGATTTTTTCTTTTTGCAATTTCGGACACCATGAGATTTTTTATTCAATTTCAGAATACCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28407</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>125595</contig_pos>
        <strand>+</strand>
        <context>TTTCTTTTTG[C/G]AATTTCGGAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGAAATTTTGGAAACTTGGAAATTCAGAAAATTCCGATTTTTTCTTTTTG</left_flank>
        <right_flank>AATTTCGGACACCATGAGATTTTTTATTCAATTTCAGAATACCGTATCCG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTCCGTAAATGATGGAACTGATCCTTGTCGGTGTAAACCATGGATAACAAGAATTGAACAATGTTGTTGATAATAGTGCTTGTGGCGTAGACACCTCCAAGGATCGAACAAATGCGGATGAGATAGGAGAAGAGGGTTCTGAAATAGGATGTTAGAGGGTTGCGACTTGAGGTTTAGTCACATTTTGGTCTATGTCTTTGAGATCACCTTGAAAAGATAAAAAGTATAATGTCTAAGTTTTTCGAGAAATTTTGATGGAGATAACCGGTTCTTATCAATCGAAAATAAATAGATTTTTGTCTAATGGTTTTTGATGTGATCTTAAATCAAAGATCGCGAAAATCAGCTGAATTAATAGGGAGTTTATAATTTCGGCTTTGAAACATTAGACGTGTGAAACAATTTCTTGTAAATTGAAACATTCCAAAAAAAAAAATTCCAAAATTATGAAATTTTGGAAACTTGGAAATTCAGAAAATTCCGATTTTTTCTTTTTGCAATTTCGGACACCATGAGATTTTTTATTCAATTTCAGAATACCGTATCCGAAGGACATTCCATTGCTTCAATGTACTTCCAGAAGGCCCTTCTATCACAGGATTCTTTCAATTAGAGATGTCCTTCTATTTTTCCCGCCATTTTTTTTACGAAAACTGCTATCGAAAAATTCTAGTTCAAGCTTTGACGAAATCCTATAAACTGTATTTGAGCATTTAACTGTAATTGAGCAAATTTCTCGAGCAAAAGAATGTTTCAAAGAATTTCTGTGAAATGTTTAGAACTTTAGAATATTGCACACAGAAAATGAACAATAATCTTTAAATTCGAACAAGACATTTTGCAGGAAGCTTTTCTATTTTAACAGCCTTTCTAATAACGGTTTCATGGAAATGGGAAATAGAAAGAGGAGTCTTAAAAGCGATTTAAAATTTTTTTAGATCGAAATGCAAAGAAATATTATTGCCATGCGCTTTTGACTGTGTTATTTCAGTTCTTCT</canonical>
            <polymorphic>AATTCCGTAAATGATGGAACTGATCCTTGTCGGTGTAAACCATGGATAACAAGAATTGAACAATGTTGTTGATAATAGTGCTTGTGGCGTAGACACCTCCAAGGATCGAACAAATGCGGATGAGATAGGAGAAGAGGGTTCTGAAATAGGATGTTAGAGGGTTGCGACTTGAGGTTTAGTCACATTTTGGTCTATGTCTTTGAGATCACCTTGAAAAGATAAAAAGTATAATGTCTAAGTTTTTCGAGAAATTTTGATGGAGATAACCGGTTCTTATCAATCGAAAATAAATAGATTTTTGTCTAATGGTTTTTGATGTGATCTTAAATCAAAGATCGCGAAAATCAGCTGAATTAATAGGGAGTTTATAATTTCGGCTTTGAAACATTAGACGTGTGAAACAATTTCTTGTAAATTGAAACATTCCAAAAAAAAAAATTCCAAAATTATGAAATTTTGGAAACTTGGAAATTCAGAAAATTCCGATTTTTTCTTTTTGSAATTTCGGACACCATGAGATTTTTTATTCAATTTCAGAATACCGTATCCGAAGGACATTCCATTGCTTCAATGTACTTCCAGAAGGCCCTTCTATCACAGGATTCTTTCAATTAGAGATGTCCTTCTATTTTTCCCGCCATTTTTTTTACGAAAACTGCTATCGAAAAATTCTAGTTCAAGCTTTGACGAAATCCTATAAACTGTATTTGAGCATTTAACTGTAATTGAGCAAATTTCTCGAGCAAAAGAATGTTTCAAAGAATTTCTGTGAAATGTTTAGAACTTTAGAATATTGCACACAGAAAATGAACAATAATCTTTAAATTCGAACAAGACATTTTGCAGGAAGCTTTTCTATTTTAACAGCCTTTCTAATAACGGTTTCATGGAAATGGGAAATAGAAAGAGGAGTCTTAAAAGCGATTTAAAATTTTTTTAGATCGAAATGCAAAGAAATATTATTGCCATGCGCTTTTGACTGTGTTATTTCAGTTCTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>499 297 106 51 47</canonical_bands>
                <polymorphic_bands>796 106 51 47</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTTTATAATTTCGGCTTTGA</pcr_primer_p1>
		<pcr_primer_p2>TTGAAAGAATCCTGTGATAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGTTTATAATTTCGGCTTTGAAACATTAGACGTGTGAAACAATTTCTTGTAAATTGAAACATTCCAAAAAAAAAAATTCCAAAATTATGAAATTTTGGAAACTTGGAAATTCAGAAAATTCCGATTTTTTCTTTTTGCAATTTCGGACACCATGAGATTTTTTATTCAATTTCAGAATACCGTATCCGAAGGACATTCCATTGCTTCAATGTACTTCCAGAAGGCCCTTCTATCACAGGATTCTTTCAA</canonical_amplicon>
		<polymorphic_amplicon>GAGTTTATAATTTCGGCTTTGAAACATTAGACGTGTGAAACAATTTCTTGTAAATTGAAACATTCCAAAAAAAAAAATTCCAAAATTATGAAATTTTGGAAACTTGGAAATTCAGAAAATTCCGATTTTTTCTTTTTGSAATTTCGGACACCATGAGATTTTTTATTCAATTTCAGAATACCGTATCCGAAGGACATTCCATTGCTTCAATGTACTTCCAGAAGGCCCTTCTATCACAGGATTCTTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28408</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>125957</contig_pos>
        <strand>+</strand>
        <context>TTTTCTATTT[C/T]AACAGCCTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATAATCTTTAAATTCGAACAAGACATTTTGCAGGAAGCTTTTCTATTT</left_flank>
        <right_flank>AACAGCCTTTCTAATAACGGTTTCATGGAAATGGGAAATAGAAAGAGGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTTATAATTTCGGCTTTGAAACATTAGACGTGTGAAACAATTTCTTGTAAATTGAAACATTCCAAAAAAAAAAATTCCAAAATTATGAAATTTTGGAAACTTGGAAATTCAGAAAATTCCGATTTTTTCTTTTTGCAATTTCGGACACCATGAGATTTTTTATTCAATTTCAGAATACCGTATCCGAAGGACATTCCATTGCTTCAATGTACTTCCAGAAGGCCCTTCTATCACAGGATTCTTTCAATTAGAGATGTCCTTCTATTTTTCCCGCCATTTTTTTTACGAAAACTGCTATCGAAAAATTCTAGTTCAAGCTTTGACGAAATCCTATAAACTGTATTTGAGCATTTAACTGTAATTGAGCAAATTTCTCGAGCAAAAGAATGTTTCAAAGAATTTCTGTGAAATGTTTAGAACTTTAGAATATTGCACACAGAAAATGAACAATAATCTTTAAATTCGAACAAGACATTTTGCAGGAAGCTTTTCTATTTTAACAGCCTTTCTAATAACGGTTTCATGGAAATGGGAAATAGAAAGAGGAGTCTTAAAAGCGATTTAAAATTTTTTTAGATCGAAATGCAAAGAAATATTATTGCCATGCGCTTTTGACTGTGTTATTTCAGTTCTTCTTCCTTTTTTCGATTTTTTACTTCAAAAAACTTCCAGATTTCTAGAGTTTTTGAATTCTGTACTACACTACAAAAGATTTATCGAATTTTCACTTACGTGGAAGTCTTGTGCACTTCTATAACGTTTGCTGTGAACTCATACTCAAACAAAATTCCTCCATGTGAGTGCTCTCCCTCCTTCAATTGCTTCTTCTTAAAACAATACGCTTTCATTTTTTAGGTTCTATGAAATTCCTTACCAGGAATGTAACCGAGTACTGATATGCCAGTGTGTATGTGAAGTATCCGTAAATCTTGGTTGGCACAATTTTGATGAAGTAGCGGTATATGTCTTGGCCTGCACGATGTGGATTAGTCATGAAT</canonical>
            <polymorphic>AGTTTATAATTTCGGCTTTGAAACATTAGACGTGTGAAACAATTTCTTGTAAATTGAAACATTCCAAAAAAAAAAATTCCAAAATTATGAAATTTTGGAAACTTGGAAATTCAGAAAATTCCGATTTTTTCTTTTTGCAATTTCGGACACCATGAGATTTTTTATTCAATTTCAGAATACCGTATCCGAAGGACATTCCATTGCTTCAATGTACTTCCAGAAGGCCCTTCTATCACAGGATTCTTTCAATTAGAGATGTCCTTCTATTTTTCCCGCCATTTTTTTTACGAAAACTGCTATCGAAAAATTCTAGTTCAAGCTTTGACGAAATCCTATAAACTGTATTTGAGCATTTAACTGTAATTGAGCAAATTTCTCGAGCAAAAGAATGTTTCAAAGAATTTCTGTGAAATGTTTAGAACTTTAGAATATTGCACACAGAAAATGAACAATAATCTTTAAATTCGAACAAGACATTTTGCAGGAAGCTTTTCTATTTYAACAGCCTTTCTAATAACGGTTTCATGGAAATGGGAAATAGAAAGAGGAGTCTTAAAAGCGATTTAAAATTTTTTTAGATCGAAATGCAAAGAAATATTATTGCCATGCGCTTTTGACTGTGTTATTTCAGTTCTTCTTCCTTTTTTCGATTTTTTACTTCAAAAAACTTCCAGATTTCTAGAGTTTTTGAATTCTGTACTACACTACAAAAGATTTATCGAATTTTCACTTACGTGGAAGTCTTGTGCACTTCTATAACGTTTGCTGTGAACTCATACTCAAACAAAATTCCTCCATGTGAGTGCTCTCCCTCCTTCAATTGCTTCTTCTTAAAACAATACGCTTTCATTTTTTAGGTTCTATGAAATTCCTTACCAGGAATGTAACCGAGTACTGATATGCCAGTGTGTATGTGAAGTATCCGTAAATCTTGGTTGGCACAATTTTGATGAAGTAGCGGTATATGTCTTGGCCTGCACGATGTGGATTAGTCATGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>354 267 169 105 54 40 11</canonical_bands>
                <polymorphic_bands>354 267 169 105 94 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTGACGAAATCCTATAAACTG</pcr_primer_p1>
		<pcr_primer_p2>ATCGCTTTTAAGACTCCTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CTTTGACGAAATCCTATAAACTGTATTTGAGCATTTAACTGTAATTGAGCAAATTTCTCGAGCAAAAGAATGTTTCAAAGAATTTCTGTGAAATGTTTAGAACTTTAGAATATTGCACACAGAAAATGAACAATAATCTTTAAATTCGAACAAGACATTTTGCAGGAAGCTTTTCTATTTTAACAGCCTTTCTAATAACGGTTTCATGGAAATGGGAAATAGAAAGAGGAGTCTTAAAAGCGAT</canonical_amplicon>
		<polymorphic_amplicon>CTTTGACGAAATCCTATAAACTGTATTTGAGCATTTAACTGTAATTGAGCAAATTTCTCGAGCAAAAGAATGTTTCAAAGAATTTCTGTGAAATGTTTAGAACTTTAGAATATTGCACACAGAAAATGAACAATAATCTTTAAATTCGAACAAGACATTTTGCAGGAAGCTTTTCTATTTYAACAGCCTTTCTAATAACGGTTTCATGGAAATGGGAAATAGAAAGAGGAGTCTTAAAAGCGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28409</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>126021</contig_pos>
        <strand>+</strand>
        <context>TAAAAGCGAT[A/T]TAAAATTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATAACGGTTTCATGGAAATGGGAAATAGAAAGAGGAGTCTTAAAAGCGAT</left_flank>
        <right_flank>TAAAATTTTTTTAGATCGAAATGCAAAGAAATATTATTGCCATGCGCTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAAAAAAAAATTCCAAAATTATGAAATTTTGGAAACTTGGAAATTCAGAAAATTCCGATTTTTTCTTTTTGCAATTTCGGACACCATGAGATTTTTTATTCAATTTCAGAATACCGTATCCGAAGGACATTCCATTGCTTCAATGTACTTCCAGAAGGCCCTTCTATCACAGGATTCTTTCAATTAGAGATGTCCTTCTATTTTTCCCGCCATTTTTTTTACGAAAACTGCTATCGAAAAATTCTAGTTCAAGCTTTGACGAAATCCTATAAACTGTATTTGAGCATTTAACTGTAATTGAGCAAATTTCTCGAGCAAAAGAATGTTTCAAAGAATTTCTGTGAAATGTTTAGAACTTTAGAATATTGCACACAGAAAATGAACAATAATCTTTAAATTCGAACAAGACATTTTGCAGGAAGCTTTTCTATTTTAACAGCCTTTCTAATAACGGTTTCATGGAAATGGGAAATAGAAAGAGGAGTCTTAAAAGCGATTTAAAATTTTTTTAGATCGAAATGCAAAGAAATATTATTGCCATGCGCTTTTGACTGTGTTATTTCAGTTCTTCTTCCTTTTTTCGATTTTTTACTTCAAAAAACTTCCAGATTTCTAGAGTTTTTGAATTCTGTACTACACTACAAAAGATTTATCGAATTTTCACTTACGTGGAAGTCTTGTGCACTTCTATAACGTTTGCTGTGAACTCATACTCAAACAAAATTCCTCCATGTGAGTGCTCTCCCTCCTTCAATTGCTTCTTCTTAAAACAATACGCTTTCATTTTTTAGGTTCTATGAAATTCCTTACCAGGAATGTAACCGAGTACTGATATGCCAGTGTGTATGTGAAGTATCCGTAAATCTTGGTTGGCACAATTTTGATGAAGTAGCGGTATATGTCTTGGCCTGCACGATGTGGATTAGTCATGAATTTCAGGAAACGAACTCACCAGATTCACTGATGTGCTCAGCACCGGCAAGTGGGGTCACCAATCC</canonical>
            <polymorphic>CAAAAAAAAAAATTCCAAAATTATGAAATTTTGGAAACTTGGAAATTCAGAAAATTCCGATTTTTTCTTTTTGCAATTTCGGACACCATGAGATTTTTTATTCAATTTCAGAATACCGTATCCGAAGGACATTCCATTGCTTCAATGTACTTCCAGAAGGCCCTTCTATCACAGGATTCTTTCAATTAGAGATGTCCTTCTATTTTTCCCGCCATTTTTTTTACGAAAACTGCTATCGAAAAATTCTAGTTCAAGCTTTGACGAAATCCTATAAACTGTATTTGAGCATTTAACTGTAATTGAGCAAATTTCTCGAGCAAAAGAATGTTTCAAAGAATTTCTGTGAAATGTTTAGAACTTTAGAATATTGCACACAGAAAATGAACAATAATCTTTAAATTCGAACAAGACATTTTGCAGGAAGCTTTTCTATTTTAACAGCCTTTCTAATAACGGTTTCATGGAAATGGGAAATAGAAAGAGGAGTCTTAAAAGCGATWTAAAATTTTTTTAGATCGAAATGCAAAGAAATATTATTGCCATGCGCTTTTGACTGTGTTATTTCAGTTCTTCTTCCTTTTTTCGATTTTTTACTTCAAAAAACTTCCAGATTTCTAGAGTTTTTGAATTCTGTACTACACTACAAAAGATTTATCGAATTTTCACTTACGTGGAAGTCTTGTGCACTTCTATAACGTTTGCTGTGAACTCATACTCAAACAAAATTCCTCCATGTGAGTGCTCTCCCTCCTTCAATTGCTTCTTCTTAAAACAATACGCTTTCATTTTTTAGGTTCTATGAAATTCCTTACCAGGAATGTAACCGAGTACTGATATGCCAGTGTGTATGTGAAGTATCCGTAAATCTTGGTTGGCACAATTTTGATGAAGTAGCGGTATATGTCTTGGCCTGCACGATGTGGATTAGTCATGAATTTCAGGAAACGAACTCACCAGATTCACTGATGTGCTCAGCACCGGCAAGTGGGGTCACCAATCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 396 105</canonical_bands>
                <polymorphic_bands>604 396</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>290 267 233 105 54 40 11</canonical_bands>
                <polymorphic_bands>290 278 233 105 54 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAATTTCTGTGAAATGTTTAGAA</pcr_primer_p1>
		<pcr_primer_p2>GGAAGAAGAACTGAAATAACACA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAGAATTTCTGTGAAATGTTTAGAACTTTAGAATATTGCACACAGAAAATGAACAATAATCTTTAAATTCGAACAAGACATTTTGCAGGAAGCTTTTCTATTTTAACAGCCTTTCTAATAACGGTTTCATGGAAATGGGAAATAGAAAGAGGAGTCTTAAAAGCGATTTAAAATTTTTTTAGATCGAAATGCAAAGAAATATTATTGCCATGCGCTTTTGACTGTGTTATTTCAGTTCTTCTTCC</canonical_amplicon>
		<polymorphic_amplicon>AAGAATTTCTGTGAAATGTTTAGAACTTTAGAATATTGCACACAGAAAATGAACAATAATCTTTAAATTCGAACAAGACATTTTGCAGGAAGCTTTTCTATTTTAACAGCCTTTCTAATAACGGTTTCATGGAAATGGGAAATAGAAAGAGGAGTCTTAAAAGCGATWTAAAATTTTTTTAGATCGAAATGCAAAGAAATATTATTGCCATGCGCTTTTGACTGTGTTATTTCAGTTCTTCTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28410</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>134849</contig_pos>
        <strand>+</strand>
        <context>GTTTCGATAC[A/C]TTTTTTTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TACACACCCGCTTGTAAAAAAATTAGTTCCCCAATAGGTTGTTTCGATAC</left_flank>
        <right_flank>TTTTTTTCTTCTGGAGCGTTTTCAAAAAAAAAAGACAAATACTTTTTGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTCATTGTGTCTACTTTGAGATTTCGAAAGTTTTGTATAGTTCCAAAGATACAAAAATCCATTGGTTTTTGTTGTATAAACGTGAGAGCAATGAAAAATTGTGCGTGCATGAAAAAAGAAAGGAGGACCTTGTTTCTTTTTTCTCTTTTCTTGACCAAAATTACTCTATTGCTGTGCAGTTGAGCATTTTCTAGGATAAGAAGGGTTTGGGAAAGATGGAGCAAGTAGAATAAGAAGAAGAACAAGTAGAAGAAGAAACAGAAGAAGAAGAAACCGCCTGACGGAAGAAAAGGGAAGAAGAAGAAGCCGTCGACGAAGTAGAAGAAGCAGTAGAAGGACAACAACTACACGTCCGTTGTCGCAAAAATATTCAGTGAAAAAGACATGATAGAGTGAAGAAGGGAAAGAAGAAGCTTTCACATATATTCGGAGAACCACACATACACATACACACCCGCTTGTAAAAAAATTAGTTCCCCAATAGGTTGTTTCGATACTTTTTTTTCTTCTGGAGCGTTTTCAAAAAAAAAAGACAAATACTTTTTGTCCCATATTTTTCCCGTTTTTTTTTTTGAAAATTTTTCCTCGCTTTTTGAACATTCTAGAGTGGAATTTGATTTGGACCACGCAAACCAACCGAACTGACCGTTGAACTATCAGTAAGAAACGATGGCGTCACATAGGCTGAGATTCTTGGCCTAAAAGCTTGACGGTGTTGATTTTTGCAAGATCAGAGTTTTGTTTTTCCTAGCAATCAGCATTATCGGTTCTACTGCCGCTGCAGAACCGAATTTGTTTTCTCTTTAATTTCATCAACGCATACATCATTATTTCTAGACTACCGCCACTTCTTTTTTGGCTCTTTGAGCATCGCTCGAGTCATTTGAATAAAGTTGATGGAATAGGAAAACACGATTAGCATCCGAACGCCTCCTATCATCACCGTTCAATTTCTGTGCAGTGGATATTGATACTTCCTGTGCCAAAATTCGAATATT</canonical>
            <polymorphic>GCTTCATTGTGTCTACTTTGAGATTTCGAAAGTTTTGTATAGTTCCAAAGATACAAAAATCCATTGGTTTTTGTTGTATAAACGTGAGAGCAATGAAAAATTGTGCGTGCATGAAAAAAGAAAGGAGGACCTTGTTTCTTTTTTCTCTTTTCTTGACCAAAATTACTCTATTGCTGTGCAGTTGAGCATTTTCTAGGATAAGAAGGGTTTGGGAAAGATGGAGCAAGTAGAATAAGAAGAAGAACAAGTAGAAGAAGAAACAGAAGAAGAAGAAACCGCCTGACGGAAGAAAAGGGAAGAAGAAGAAGCCGTCGACGAAGTAGAAGAAGCAGTAGAAGGACAACAACTACACGTCCGTTGTCGCAAAAATATTCAGTGAAAAAGACATGATAGAGTGAAGAAGGGAAAGAAGAAGCTTTCACATATATTCGGAGAACCACACATACACATACACACCCGCTTGTAAAAAAATTAGTTCCCCAATAGGTTGTTTCGATACMTTTTTTTCTTCTGGAGCGTTTTCAAAAAAAAAAGACAAATACTTTTTGTCCCATATTTTTCCCGTTTTTTTTTTTGAAAATTTTTCCTCGCTTTTTGAACATTCTAGAGTGGAATTTGATTTGGACCACGCAAACCAACCGAACTGACCGTTGAACTATCAGTAAGAAACGATGGCGTCACATAGGCTGAGATTCTTGGCCTAAAAGCTTGACGGTGTTGATTTTTGCAAGATCAGAGTTTTGTTTTTCCTAGCAATCAGCATTATCGGTTCTACTGCCGCTGCAGAACCGAATTTGTTTTCTCTTTAATTTCATCAACGCATACATCATTATTTCTAGACTACCGCCACTTCTTTTTTGGCTCTTTGAGCATCGCTCGAGTCATTTGAATAAAGTTGATGGAATAGGAAAACACGATTAGCATCCGAACGCCTCCTATCATCACCGTTCAATTTCTGTGCAGTGGATATTGATACTTCCTGTGCCAAAATTCGAATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATATTCGGAGAACCACACATAC</pcr_primer_p1>
		<pcr_primer_p2>CCATCGTTTCTTACTGATAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATATTCGGAGAACCACACATACACATACACACCCGCTTGTAAAAAAATTAGTTCCCCAATAGGTTGTTTCGATACTTTTTTTTCTTCTGGAGCGTTTTCAAAAAAAAAAGACAAATACTTTTTGTCCCATATTTTTCCCGTTTTTTTTTTTGAAAATTTTTCCTCGCTTTTTGAACATTCTAGAGTGGAATTTGATTTGGACCACGCAAACCAACCGAACTGACCGTTGAACTATCAGTAAGAAACGATGG</canonical_amplicon>
		<polymorphic_amplicon>TATATTCGGAGAACCACACATACACATACACACCCGCTTGTAAAAAAATTAGTTCCCCAATAGGTTGTTTCGATACMTTTTTTTCTTCTGGAGCGTTTTCAAAAAAAAAAGACAAATACTTTTTGTCCCATATTTTTCCCGTTTTTTTTTTTGAAAATTTTTCCTCGCTTTTTGAACATTCTAGAGTGGAATTTGATTTGGACCACGCAAACCAACCGAACTGACCGTTGAACTATCAGTAAGAAACGATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28411</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>134876</contig_pos>
        <strand></strand>
        <context>CGTTTTCAAA[A/C]AAAAAAGACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCCCAATAGGTTGTTTCGATACTTTTTTTTCTTCTGGAGCGTTTTCAAA</left_flank>
        <right_flank>AAAAAAGACAAATACTTTTTGTCCCATATTTTTCCCGTTTTTTTTTTTGA</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAGTTTTGTATAGTTCCAAAGATACAAAAATCCATTGGTTTTTGTTGTATAAACGTGAGAGCAATGAAAAATTGTGCGTGCATGAAAAAAGAAAGGAGGACCTTGTTTCTTTTTTCTCTTTTCTTGACCAAAATTACTCTATTGCTGTGCAGTTGAGCATTTTCTAGGATAAGAAGGGTTTGGGAAAGATGGAGCAAGTAGAATAAGAAGAAGAACAAGTAGAAGAAGAAACAGAAGAAGAAGAAACCGCCTGACGGAAGAAAAGGGAAGAAGAAGAAGCCGTCGACGAAGTAGAAGAAGCAGTAGAAGGACAACAACTACACGTCCGTTGTCGCAAAAATATTCAGTGAAAAAGACATGATAGAGTGAAGAAGGGAAAGAAGAAGCTTTCACATATATTCGGAGAACCACACATACACATACACACCCGCTTGTAAAAAAATTAGTTCCCCAATAGGTTGTTTCGATACTTTTTTTTCTTCTGGAGCGTTTTCAAAAAAAAAAGACAAATACTTTTTGTCCCATATTTTTCCCGTTTTTTTTTTTGAAAATTTTTCCTCGCTTTTTGAACATTCTAGAGTGGAATTTGATTTGGACCACGCAAACCAACCGAACTGACCGTTGAACTATCAGTAAGAAACGATGGCGTCACATAGGCTGAGATTCTTGGCCTAAAAGCTTGACGGTGTTGATTTTTGCAAGATCAGAGTTTTGTTTTTCCTAGCAATCAGCATTATCGGTTCTACTGCCGCTGCAGAACCGAATTTGTTTTCTCTTTAATTTCATCAACGCATACATCATTATTTCTAGACTACCGCCACTTCTTTTTTGGCTCTTTGAGCATCGCTCGAGTCATTTGAATAAAGTTGATGGAATAGGAAAACACGATTAGCATCCGAACGCCTCCTATCATCACCGTTCAATTTCTGTGCAGTGGATATTGATACTTCCTGTGCCAAAATTCGAATATTGGCGTGCATGGAACAGAAAAGTTGAAT</canonical>
            <polymorphic>GAAAGTTTTGTATAGTTCCAAAGATACAAAAATCCATTGGTTTTTGTTGTATAAACGTGAGAGCAATGAAAAATTGTGCGTGCATGAAAAAAGAAAGGAGGACCTTGTTTCTTTTTTCTCTTTTCTTGACCAAAATTACTCTATTGCTGTGCAGTTGAGCATTTTCTAGGATAAGAAGGGTTTGGGAAAGATGGAGCAAGTAGAATAAGAAGAAGAACAAGTAGAAGAAGAAACAGAAGAAGAAGAAACCGCCTGACGGAAGAAAAGGGAAGAAGAAGAAGCCGTCGACGAAGTAGAAGAAGCAGTAGAAGGACAACAACTACACGTCCGTTGTCGCAAAAATATTCAGTGAAAAAGACATGATAGAGTGAAGAAGGGAAAGAAGAAGCTTTCACATATATTCGGAGAACCACACATACACATACACACCCGCTTGTAAAAAAATTAGTTCCCCAATAGGTTGTTTCGATACTTTTTTTTCTTCTGGAGCGTTTTCAAAMAAAAAAGACAAATACTTTTTGTCCCATATTTTTCCCGTTTTTTTTTTTGAAAATTTTTCCTCGCTTTTTGAACATTCTAGAGTGGAATTTGATTTGGACCACGCAAACCAACCGAACTGACCGTTGAACTATCAGTAAGAAACGATGGCGTCACATAGGCTGAGATTCTTGGCCTAAAAGCTTGACGGTGTTGATTTTTGCAAGATCAGAGTTTTGTTTTTCCTAGCAATCAGCATTATCGGTTCTACTGCCGCTGCAGAACCGAATTTGTTTTCTCTTTAATTTCATCAACGCATACATCATTATTTCTAGACTACCGCCACTTCTTTTTTGGCTCTTTGAGCATCGCTCGAGTCATTTGAATAAAGTTGATGGAATAGGAAAACACGATTAGCATCCGAACGCCTCCTATCATCACCGTTCAATTTCTGTGCAGTGGATATTGATACTTCCTGTGCCAAAATTCGAATATTGGCGTGCATGGAACAGAAAAGTTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATATTCGGAGAACCACACATAC</pcr_primer_p1>
		<pcr_primer_p2>CCATCGTTTCTTACTGATAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATATTCGGAGAACCACACATACACATACACACCCGCTTGTAAAAAAATTAGTTCCCCAATAGGTTGTTTCGATACTTTTTTTTCTTCTGGAGCGTTTTCAAAAAAAAAAGACAAATACTTTTTGTCCCATATTTTTCCCGTTTTTTTTTTTGAAAATTTTTCCTCGCTTTTTGAACATTCTAGAGTGGAATTTGATTTGGACCACGCAAACCAACCGAACTGACCGTTGAACTATCAGTAAGAAACGATGG</canonical_amplicon>
		<polymorphic_amplicon>TATATTCGGAGAACCACACATACACATACACACCCGCTTGTAAAAAAATTAGTTCCCCAATAGGTTGTTTCGATACTTTTTTTTCTTCTGGAGCGTTTTCAAAMAAAAAAGACAAATACTTTTTGTCCCATATTTTTCCCGTTTTTTTTTTTGAAAATTTTTCCTCGCTTTTTGAACATTCTAGAGTGGAATTTGATTTGGACCACGCAAACCAACCGAACTGACCGTTGAACTATCAGTAAGAAACGATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28412</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>134925</contig_pos>
        <strand></strand>
        <context>TTTTTTTTTT[G/T]AAAATTTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAAAAAGACAAATACTTTTTGTCCCATATTTTTCCCGTTTTTTTTTTT</left_flank>
        <right_flank>AAAATTTTTCCTCGCTTTTTGAACATTCTAGAGTGGAATTTGATTTGGAC</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAAACGTGAGAGCAATGAAAAATTGTGCGTGCATGAAAAAAGAAAGGAGGACCTTGTTTCTTTTTTCTCTTTTCTTGACCAAAATTACTCTATTGCTGTGCAGTTGAGCATTTTCTAGGATAAGAAGGGTTTGGGAAAGATGGAGCAAGTAGAATAAGAAGAAGAACAAGTAGAAGAAGAAACAGAAGAAGAAGAAACCGCCTGACGGAAGAAAAGGGAAGAAGAAGAAGCCGTCGACGAAGTAGAAGAAGCAGTAGAAGGACAACAACTACACGTCCGTTGTCGCAAAAATATTCAGTGAAAAAGACATGATAGAGTGAAGAAGGGAAAGAAGAAGCTTTCACATATATTCGGAGAACCACACATACACATACACACCCGCTTGTAAAAAAATTAGTTCCCCAATAGGTTGTTTCGATACTTTTTTTTCTTCTGGAGCGTTTTCAAAAAAAAAAGACAAATACTTTTTGTCCCATATTTTTCCCGTTTTTTTTTTTGAAAATTTTTCCTCGCTTTTTGAACATTCTAGAGTGGAATTTGATTTGGACCACGCAAACCAACCGAACTGACCGTTGAACTATCAGTAAGAAACGATGGCGTCACATAGGCTGAGATTCTTGGCCTAAAAGCTTGACGGTGTTGATTTTTGCAAGATCAGAGTTTTGTTTTTCCTAGCAATCAGCATTATCGGTTCTACTGCCGCTGCAGAACCGAATTTGTTTTCTCTTTAATTTCATCAACGCATACATCATTATTTCTAGACTACCGCCACTTCTTTTTTGGCTCTTTGAGCATCGCTCGAGTCATTTGAATAAAGTTGATGGAATAGGAAAACACGATTAGCATCCGAACGCCTCCTATCATCACCGTTCAATTTCTGTGCAGTGGATATTGATACTTCCTGTGCCAAAATTCGAATATTGGCGTGCATGGAACAGAAAAGTTGAATATGCAAATTTTCAATAAGGCTTCTTGTTCTTCTTCTTTTTTTTCTCTAG</canonical>
            <polymorphic>TATAAACGTGAGAGCAATGAAAAATTGTGCGTGCATGAAAAAAGAAAGGAGGACCTTGTTTCTTTTTTCTCTTTTCTTGACCAAAATTACTCTATTGCTGTGCAGTTGAGCATTTTCTAGGATAAGAAGGGTTTGGGAAAGATGGAGCAAGTAGAATAAGAAGAAGAACAAGTAGAAGAAGAAACAGAAGAAGAAGAAACCGCCTGACGGAAGAAAAGGGAAGAAGAAGAAGCCGTCGACGAAGTAGAAGAAGCAGTAGAAGGACAACAACTACACGTCCGTTGTCGCAAAAATATTCAGTGAAAAAGACATGATAGAGTGAAGAAGGGAAAGAAGAAGCTTTCACATATATTCGGAGAACCACACATACACATACACACCCGCTTGTAAAAAAATTAGTTCCCCAATAGGTTGTTTCGATACTTTTTTTTCTTCTGGAGCGTTTTCAAAAAAAAAAGACAAATACTTTTTGTCCCATATTTTTCCCGTTTTTTTTTTTKAAAATTTTTCCTCGCTTTTTGAACATTCTAGAGTGGAATTTGATTTGGACCACGCAAACCAACCGAACTGACCGTTGAACTATCAGTAAGAAACGATGGCGTCACATAGGCTGAGATTCTTGGCCTAAAAGCTTGACGGTGTTGATTTTTGCAAGATCAGAGTTTTGTTTTTCCTAGCAATCAGCATTATCGGTTCTACTGCCGCTGCAGAACCGAATTTGTTTTCTCTTTAATTTCATCAACGCATACATCATTATTTCTAGACTACCGCCACTTCTTTTTTGGCTCTTTGAGCATCGCTCGAGTCATTTGAATAAAGTTGATGGAATAGGAAAACACGATTAGCATCCGAACGCCTCCTATCATCACCGTTCAATTTCTGTGCAGTGGATATTGATACTTCCTGTGCCAAAATTCGAATATTGGCGTGCATGGAACAGAAAAGTTGAATATGCAAATTTTCAATAAGGCTTCTTGTTCTTCTTCTTTTTTTTCTCTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATATTCGGAGAACCACACATAC</pcr_primer_p1>
		<pcr_primer_p2>CCATCGTTTCTTACTGATAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATATTCGGAGAACCACACATACACATACACACCCGCTTGTAAAAAAATTAGTTCCCCAATAGGTTGTTTCGATACTTTTTTTTCTTCTGGAGCGTTTTCAAAAAAAAAAGACAAATACTTTTTGTCCCATATTTTTCCCGTTTTTTTTTTTGAAAATTTTTCCTCGCTTTTTGAACATTCTAGAGTGGAATTTGATTTGGACCACGCAAACCAACCGAACTGACCGTTGAACTATCAGTAAGAAACGATGG</canonical_amplicon>
		<polymorphic_amplicon>TATATTCGGAGAACCACACATACACATACACACCCGCTTGTAAAAAAATTAGTTCCCCAATAGGTTGTTTCGATACTTTTTTTTCTTCTGGAGCGTTTTCAAAAAAAAAAGACAAATACTTTTTGTCCCATATTTTTCCCGTTTTTTTTTTTKAAAATTTTTCCTCGCTTTTTGAACATTCTAGAGTGGAATTTGATTTGGACCACGCAAACCAACCGAACTGACCGTTGAACTATCAGTAAGAAACGATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28413</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>136479</contig_pos>
        <strand>+</strand>
        <context>ATTTTCCTTC[G/T]TTTACGATGC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTGCACTTAAAAAGTGTCCATCTAGACAACTCCTTTGTCATTTTCCTTC</left_flank>
        <right_flank>TTTACGATGCATTTTCATTCATGTCTTCTCCATCTCGAAAGGTTGCTCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGTAAACAATATTTAACACTGGTAGGCTCAAAAAATACTGTAATTCGCTCTTGCACATTGAAAAAAGTCAACGGGACCATATACCACAATTTTTGAGCGTATTTCGATTATTATAACCCCATTTTCTCAACTTTTATACAATTTTCATTGGTTCTTCAATGACTGCCATTGTTTTTTCTTCCGATTTACTTCGGAAAAATTGCAAAATTTGGGAAATAGTATTAAAAATTGGCTCAAACAAACGGTAGATCGCTCTTGCGCTTTTAAAAACAAGAGTCATATATTTTTCAACGTTTGTGAACATCCTATGATCTCTTCCACCTACTTGTATTTATCAGATAATTATATTTTTATTTCCTCAATATTGTTTTTGCTAGATTCTGTCCTCACAGTTGCCCTGAACTACTTTCAAAGATCCAGAAGCTTTTAACCCATCTCGACTTGATATTGCACTTAAAAAGTGTCCATCTAGACAACTCCTTTGTCATTTTCCTTCTTTTACGATGCATTTTCATTCATGTCTTCTCCATCTCGAAAGGTTGCTCCTGCTTCTTCCTCTTCCACTTCCCACCTCTGCCTGTCTGTTTACGACAATAGTGTCTTCCTTTATCTTCTTCTCCTTCTTCTCCTTTTTCTTCATCATCATCTCCGCTGGTGGCACTCGCAACTGCCTCAAATACTCTTCACTCATCCTATCTCATATGTATCAAGATTATCCTGCACCTCAGCCGCTTCTTTTCTCGTCGTCCCCGCCTCACTCTCCGCCCCATATCTTTTTGTTTTCCGAGAGACATCTCGAAATAGATGGTTGTTGTTTTTTTTTCATACACATATCAGTCATAGATGTTCGCTTTCTTTTTCGTGTTCGTTTTTAAATCGCTGACTTGGGAGGTGGTTTCAAGAAGTCAGGAAAACACCATTTTAGGTTTTTTGTTGTCATTTTCAGCCAAACCAGTTGTGCCAAAACAGGAAAAGCGTTTTTAACTTTTTGTTGAAT</canonical>
            <polymorphic>AAAAGTAAACAATATTTAACACTGGTAGGCTCAAAAAATACTGTAATTCGCTCTTGCACATTGAAAAAAGTCAACGGGACCATATACCACAATTTTTGAGCGTATTTCGATTATTATAACCCCATTTTCTCAACTTTTATACAATTTTCATTGGTTCTTCAATGACTGCCATTGTTTTTTCTTCCGATTTACTTCGGAAAAATTGCAAAATTTGGGAAATAGTATTAAAAATTGGCTCAAACAAACGGTAGATCGCTCTTGCGCTTTTAAAAACAAGAGTCATATATTTTTCAACGTTTGTGAACATCCTATGATCTCTTCCACCTACTTGTATTTATCAGATAATTATATTTTTATTTCCTCAATATTGTTTTTGCTAGATTCTGTCCTCACAGTTGCCCTGAACTACTTTCAAAGATCCAGAAGCTTTTAACCCATCTCGACTTGATATTGCACTTAAAAAGTGTCCATCTAGACAACTCCTTTGTCATTTTCCTTCKTTTACGATGCATTTTCATTCATGTCTTCTCCATCTCGAAAGGTTGCTCCTGCTTCTTCCTCTTCCACTTCCCACCTCTGCCTGTCTGTTTACGACAATAGTGTCTTCCTTTATCTTCTTCTCCTTCTTCTCCTTTTTCTTCATCATCATCTCCGCTGGTGGCACTCGCAACTGCCTCAAATACTCTTCACTCATCCTATCTCATATGTATCAAGATTATCCTGCACCTCAGCCGCTTCTTTTCTCGTCGTCCCCGCCTCACTCTCCGCCCCATATCTTTTTGTTTTCCGAGAGACATCTCGAAATAGATGGTTGTTGTTTTTTTTTCATACACATATCAGTCATAGATGTTCGCTTTCTTTTTCGTGTTCGTTTTTAAATCGCTGACTTGGGAGGTGGTTTCAAGAAGTCAGGAAAACACCATTTTAGGTTTTTTGTTGTCATTTTCAGCCAAACCAGTTGTGCCAAAACAGGAAAAGCGTTTTTAACTTTTTGTTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTCAATATTGTTTTTGCTAGA</pcr_primer_p1>
		<pcr_primer_p2>GGAAGACACTATTGTCGTAAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCTCAATATTGTTTTTGCTAGATTCTGTCCTCACAGTTGCCCTGAACTACTTTCAAAGATCCAGAAGCTTTTAACCCATCTCGACTTGATATTGCACTTAAAAAGTGTCCATCTAGACAACTCCTTTGTCATTTTCCTTCTTTTACGATGCATTTTCATTCATGTCTTCTCCATCTCGAAAGGTTGCTCCTGCTTCTTCCTCTTCCACTTCCCACCTCTGCCTGTCTGTTTACGACAATAGTGTCTTCC</canonical_amplicon>
		<polymorphic_amplicon>TCCTCAATATTGTTTTTGCTAGATTCTGTCCTCACAGTTGCCCTGAACTACTTTCAAAGATCCAGAAGCTTTTAACCCATCTCGACTTGATATTGCACTTAAAAAGTGTCCATCTAGACAACTCCTTTGTCATTTTCCTTCKTTTACGATGCATTTTCATTCATGTCTTCTCCATCTCGAAAGGTTGCTCCTGCTTCTTCCTCTTCCACTTCCCACCTCTGCCTGTCTGTTTACGACAATAGTGTCTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28414</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>136535</contig_pos>
        <strand>+</strand>
        <context>CTCCTGCTTC[G/T]TCCTCTTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATGCATTTTCATTCATGTCTTCTCCATCTCGAAAGGTTGCTCCTGCTTC</left_flank>
        <right_flank>TCCTCTTCCACTTCCCACCTCTGCCTGTCTGTTTACGACAATAGTGTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACATTGAAAAAAGTCAACGGGACCATATACCACAATTTTTGAGCGTATTTCGATTATTATAACCCCATTTTCTCAACTTTTATACAATTTTCATTGGTTCTTCAATGACTGCCATTGTTTTTTCTTCCGATTTACTTCGGAAAAATTGCAAAATTTGGGAAATAGTATTAAAAATTGGCTCAAACAAACGGTAGATCGCTCTTGCGCTTTTAAAAACAAGAGTCATATATTTTTCAACGTTTGTGAACATCCTATGATCTCTTCCACCTACTTGTATTTATCAGATAATTATATTTTTATTTCCTCAATATTGTTTTTGCTAGATTCTGTCCTCACAGTTGCCCTGAACTACTTTCAAAGATCCAGAAGCTTTTAACCCATCTCGACTTGATATTGCACTTAAAAAGTGTCCATCTAGACAACTCCTTTGTCATTTTCCTTCTTTTACGATGCATTTTCATTCATGTCTTCTCCATCTCGAAAGGTTGCTCCTGCTTCTTCCTCTTCCACTTCCCACCTCTGCCTGTCTGTTTACGACAATAGTGTCTTCCTTTATCTTCTTCTCCTTCTTCTCCTTTTTCTTCATCATCATCTCCGCTGGTGGCACTCGCAACTGCCTCAAATACTCTTCACTCATCCTATCTCATATGTATCAAGATTATCCTGCACCTCAGCCGCTTCTTTTCTCGTCGTCCCCGCCTCACTCTCCGCCCCATATCTTTTTGTTTTCCGAGAGACATCTCGAAATAGATGGTTGTTGTTTTTTTTTCATACACATATCAGTCATAGATGTTCGCTTTCTTTTTCGTGTTCGTTTTTAAATCGCTGACTTGGGAGGTGGTTTCAAGAAGTCAGGAAAACACCATTTTAGGTTTTTTGTTGTCATTTTCAGCCAAACCAGTTGTGCCAAAACAGGAAAAGCGTTTTTAACTTTTTGTTGAATCAGACTTTTCTCATTTTTCACGCCTCCGTTATTTTTGAGACTTTCGTGTGTTTCCA</canonical>
            <polymorphic>CACATTGAAAAAAGTCAACGGGACCATATACCACAATTTTTGAGCGTATTTCGATTATTATAACCCCATTTTCTCAACTTTTATACAATTTTCATTGGTTCTTCAATGACTGCCATTGTTTTTTCTTCCGATTTACTTCGGAAAAATTGCAAAATTTGGGAAATAGTATTAAAAATTGGCTCAAACAAACGGTAGATCGCTCTTGCGCTTTTAAAAACAAGAGTCATATATTTTTCAACGTTTGTGAACATCCTATGATCTCTTCCACCTACTTGTATTTATCAGATAATTATATTTTTATTTCCTCAATATTGTTTTTGCTAGATTCTGTCCTCACAGTTGCCCTGAACTACTTTCAAAGATCCAGAAGCTTTTAACCCATCTCGACTTGATATTGCACTTAAAAAGTGTCCATCTAGACAACTCCTTTGTCATTTTCCTTCTTTTACGATGCATTTTCATTCATGTCTTCTCCATCTCGAAAGGTTGCTCCTGCTTCKTCCTCTTCCACTTCCCACCTCTGCCTGTCTGTTTACGACAATAGTGTCTTCCTTTATCTTCTTCTCCTTCTTCTCCTTTTTCTTCATCATCATCTCCGCTGGTGGCACTCGCAACTGCCTCAAATACTCTTCACTCATCCTATCTCATATGTATCAAGATTATCCTGCACCTCAGCCGCTTCTTTTCTCGTCGTCCCCGCCTCACTCTCCGCCCCATATCTTTTTGTTTTCCGAGAGACATCTCGAAATAGATGGTTGTTGTTTTTTTTTCATACACATATCAGTCATAGATGTTCGCTTTCTTTTTCGTGTTCGTTTTTAAATCGCTGACTTGGGAGGTGGTTTCAAGAAGTCAGGAAAACACCATTTTAGGTTTTTTGTTGTCATTTTCAGCCAAACCAGTTGTGCCAAAACAGGAAAAGCGTTTTTAACTTTTTGTTGAATCAGACTTTTCTCATTTTTCACGCCTCCGTTATTTTTGAGACTTTCGTGTGTTTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTCAATATTGTTTTTGCTAGAT</pcr_primer_p1>
		<pcr_primer_p2>AAGGAAGACACTATTGTCGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCTCAATATTGTTTTTGCTAGATTCTGTCCTCACAGTTGCCCTGAACTACTTTCAAAGATCCAGAAGCTTTTAACCCATCTCGACTTGATATTGCACTTAAAAAGTGTCCATCTAGACAACTCCTTTGTCATTTTCCTTCTTTTACGATGCATTTTCATTCATGTCTTCTCCATCTCGAAAGGTTGCTCCTGCTTCTTCCTCTTCCACTTCCCACCTCTGCCTGTCTGTTTACGACAATAGTGTCTTCCTT</canonical_amplicon>
		<polymorphic_amplicon>CCTCAATATTGTTTTTGCTAGATTCTGTCCTCACAGTTGCCCTGAACTACTTTCAAAGATCCAGAAGCTTTTAACCCATCTCGACTTGATATTGCACTTAAAAAGTGTCCATCTAGACAACTCCTTTGTCATTTTCCTTCTTTTACGATGCATTTTCATTCATGTCTTCTCCATCTCGAAAGGTTGCTCCTGCTTCKTCCTCTTCCACTTCCCACCTCTGCCTGTCTGTTTACGACAATAGTGTCTTCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28415</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>211035</contig_pos>
        <strand>+</strand>
        <context>TGCCGAGTAG[C/T]AATCATCCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAGTGGAGTTGTACTTGTGCTGCTTGCTACAGTTGGATGTGCCGAGTAG</left_flank>
        <right_flank>AATCATCCAATCCTCTGAGCTACGGTAGCTACGGTAGACGAAGGTTGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCAGTTGGCGCCAGCTTCGATTTTTGGGCAAAAAAGTGTGTTTTTTTTTGGGAAAAAGTTGTTTTTATTATCTAATTTCAAGCTAAATTATAAATATTGAATTTGTGAATGTTTAAACAAATTTTTGAAAAATTATTTTTTTTCCTGAACTTTTCCAAAGTTGATAATGAAAAAAAAATTGCATTTTTGAAGCAAAATAACAGTTTTCTTTCGAAAACTAGTTTTTTTTTAATTCTCAAAAAATGATCAAAAAAATGTTTTTTCGAGAAATTTCAACCAAAAATATTCTTGTCCGGGCCTTCAACGATTTTTGCAAGTATGTTTGTAACGTAGAGAAGTCATCTACGTCACGGAGCAAAAATCGAGTAGCTTGATCCAATCCTGGTTAATTTTAAAGGTGGGAGGACACGGAAAAAAACTTTCTAGAAAATTTGTAGAATATGAGCATCCAGTGGAGTTGTACTTGTGCTGCTTGCTACAGTTGGATGTGCCGAGTAGCAATCATCCAATCCTCTGAGCTACGGTAGCTACGGTAGACGAAGGTTGTTTGAACACCAATAACTGTACACCATCACGTCAAAATGCACACCTCAAAAGCTGGATAATATTCTACCCTTCCTTCTTTAAAATCAAATTTTTCGTGTGTTGTCCCATAACGAAAAATGTTGGAAAACCTGAAAATTCGAACGATTGCGATTTTTATTTAGAAAAGTAAAGTTCTTTAATTTTAAATTTTTGGATCTGACTCTTAGAAGTATTGACAATGATTTTAAAGCCTTTTTCAGACGAAATTAGTTTTCCTGGAAAATTATTTTTCTTGAGTATTTTTGATCTAAAGAAAAATTATCCTGAAAAGGTGTTACTGGTTTGTCTAGCTTTAGGTTTTTCTAAACTGTCATACAGTATTCACTTTTTAATTTTTGCTGAACGAAAACTAGTTTCTTTTCTACTTCTGTTTTGTAAAAACTAATTTATTATAAAATTTTTATTAAATTCAAG</canonical>
            <polymorphic>GCCAGTTGGCGCCAGCTTCGATTTTTGGGCAAAAAAGTGTGTTTTTTTTTGGGAAAAAGTTGTTTTTATTATCTAATTTCAAGCTAAATTATAAATATTGAATTTGTGAATGTTTAAACAAATTTTTGAAAAATTATTTTTTTTCCTGAACTTTTCCAAAGTTGATAATGAAAAAAAAATTGCATTTTTGAAGCAAAATAACAGTTTTCTTTCGAAAACTAGTTTTTTTTTAATTCTCAAAAAATGATCAAAAAAATGTTTTTTCGAGAAATTTCAACCAAAAATATTCTTGTCCGGGCCTTCAACGATTTTTGCAAGTATGTTTGTAACGTAGAGAAGTCATCTACGTCACGGAGCAAAAATCGAGTAGCTTGATCCAATCCTGGTTAATTTTAAAGGTGGGAGGACACGGAAAAAAACTTTCTAGAAAATTTGTAGAATATGAGCATCCAGTGGAGTTGTACTTGTGCTGCTTGCTACAGTTGGATGTGCCGAGTAGYAATCATCCAATCCTCTGAGCTACGGTAGCTACGGTAGACGAAGGTTGTTTGAACACCAATAACTGTACACCATCACGTCAAAATGCACACCTCAAAAGCTGGATAATATTCTACCCTTCCTTCTTTAAAATCAAATTTTTCGTGTGTTGTCCCATAACGAAAAATGTTGGAAAACCTGAAAATTCGAACGATTGCGATTTTTATTTAGAAAAGTAAAGTTCTTTAATTTTAAATTTTTGGATCTGACTCTTAGAAGTATTGACAATGATTTTAAAGCCTTTTTCAGACGAAATTAGTTTTCCTGGAAAATTATTTTTCTTGAGTATTTTTGATCTAAAGAAAAATTATCCTGAAAAGGTGTTACTGGTTTGTCTAGCTTTAGGTTTTTCTAAACTGTCATACAGTATTCACTTTTTAATTTTTGCTGAACGAAAACTAGTTTCTTTTCTACTTCTGTTTTGTAAAAACTAATTTATTATAAAATTTTTATTAAATTCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCCTGGTTAATTTTAAAGGTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTAAAGAAGGAAGGGTAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AATCCTGGTTAATTTTAAAGGTGGGAGGACACGGAAAAAAACTTTCTAGAAAATTTGTAGAATATGAGCATCCAGTGGAGTTGTACTTGTGCTGCTTGCTACAGTTGGATGTGCCGAGTAGCAATCATCCAATCCTCTGAGCTACGGTAGCTACGGTAGACGAAGGTTGTTTGAACACCAATAACTGTACACCATCACGTCAAAATGCACACCTCAAAAGCTGGATAATATTCTACCCTTCCTTCTTTAAAA</canonical_amplicon>
		<polymorphic_amplicon>AATCCTGGTTAATTTTAAAGGTGGGAGGACACGGAAAAAAACTTTCTAGAAAATTTGTAGAATATGAGCATCCAGTGGAGTTGTACTTGTGCTGCTTGCTACAGTTGGATGTGCCGAGTAGYAATCATCCAATCCTCTGAGCTACGGTAGCTACGGTAGACGAAGGTTGTTTGAACACCAATAACTGTACACCATCACGTCAAAATGCACACCTCAAAAGCTGGATAATATTCTACCCTTCCTTCTTTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28416</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>211113</contig_pos>
        <strand>+</strand>
        <context>CACCATCACG[C/T]CAAAATGCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTACGGTAGACGAAGGTTGTTTGAACACCAATAACTGTACACCATCACG</left_flank>
        <right_flank>CAAAATGCACACCTCAAAAGCTGGATAATATTCTACCCTTCCTTCTTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAGCTAAATTATAAATATTGAATTTGTGAATGTTTAAACAAATTTTTGAAAAATTATTTTTTTTCCTGAACTTTTCCAAAGTTGATAATGAAAAAAAAATTGCATTTTTGAAGCAAAATAACAGTTTTCTTTCGAAAACTAGTTTTTTTTTAATTCTCAAAAAATGATCAAAAAAATGTTTTTTCGAGAAATTTCAACCAAAAATATTCTTGTCCGGGCCTTCAACGATTTTTGCAAGTATGTTTGTAACGTAGAGAAGTCATCTACGTCACGGAGCAAAAATCGAGTAGCTTGATCCAATCCTGGTTAATTTTAAAGGTGGGAGGACACGGAAAAAAACTTTCTAGAAAATTTGTAGAATATGAGCATCCAGTGGAGTTGTACTTGTGCTGCTTGCTACAGTTGGATGTGCCGAGTAGCAATCATCCAATCCTCTGAGCTACGGTAGCTACGGTAGACGAAGGTTGTTTGAACACCAATAACTGTACACCATCACGTCAAAATGCACACCTCAAAAGCTGGATAATATTCTACCCTTCCTTCTTTAAAATCAAATTTTTCGTGTGTTGTCCCATAACGAAAAATGTTGGAAAACCTGAAAATTCGAACGATTGCGATTTTTATTTAGAAAAGTAAAGTTCTTTAATTTTAAATTTTTGGATCTGACTCTTAGAAGTATTGACAATGATTTTAAAGCCTTTTTCAGACGAAATTAGTTTTCCTGGAAAATTATTTTTCTTGAGTATTTTTGATCTAAAGAAAAATTATCCTGAAAAGGTGTTACTGGTTTGTCTAGCTTTAGGTTTTTCTAAACTGTCATACAGTATTCACTTTTTAATTTTTGCTGAACGAAAACTAGTTTCTTTTCTACTTCTGTTTTGTAAAAACTAATTTATTATAAAATTTTTATTAAATTCAAGAACATTTGAAGATCCACAAAAAGCAAATCAAAACACATCATCCCAGACTAATCAACGCCCAATTATCATCATTTCATC</canonical>
            <polymorphic>TCAAGCTAAATTATAAATATTGAATTTGTGAATGTTTAAACAAATTTTTGAAAAATTATTTTTTTTCCTGAACTTTTCCAAAGTTGATAATGAAAAAAAAATTGCATTTTTGAAGCAAAATAACAGTTTTCTTTCGAAAACTAGTTTTTTTTTAATTCTCAAAAAATGATCAAAAAAATGTTTTTTCGAGAAATTTCAACCAAAAATATTCTTGTCCGGGCCTTCAACGATTTTTGCAAGTATGTTTGTAACGTAGAGAAGTCATCTACGTCACGGAGCAAAAATCGAGTAGCTTGATCCAATCCTGGTTAATTTTAAAGGTGGGAGGACACGGAAAAAAACTTTCTAGAAAATTTGTAGAATATGAGCATCCAGTGGAGTTGTACTTGTGCTGCTTGCTACAGTTGGATGTGCCGAGTAGCAATCATCCAATCCTCTGAGCTACGGTAGCTACGGTAGACGAAGGTTGTTTGAACACCAATAACTGTACACCATCACGYCAAAATGCACACCTCAAAAGCTGGATAATATTCTACCCTTCCTTCTTTAAAATCAAATTTTTCGTGTGTTGTCCCATAACGAAAAATGTTGGAAAACCTGAAAATTCGAACGATTGCGATTTTTATTTAGAAAAGTAAAGTTCTTTAATTTTAAATTTTTGGATCTGACTCTTAGAAGTATTGACAATGATTTTAAAGCCTTTTTCAGACGAAATTAGTTTTCCTGGAAAATTATTTTTCTTGAGTATTTTTGATCTAAAGAAAAATTATCCTGAAAAGGTGTTACTGGTTTGTCTAGCTTTAGGTTTTTCTAAACTGTCATACAGTATTCACTTTTTAATTTTTGCTGAACGAAAACTAGTTTCTTTTCTACTTCTGTTTTGTAAAAACTAATTTATTATAAAATTTTTATTAAATTCAAGAACATTTGAAGATCCACAAAAAGCAAATCAAAACACATCATCCCAGACTAATCAACGCCCAATTATCATCATTTCATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>503 251 229 17</canonical_bands>
                <polymorphic_bands>732 251 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCCTGGTTAATTTTAAAGGTG</pcr_primer_p1>
		<pcr_primer_p2>GATTTTAAAGAAGGAAGGGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AATCCTGGTTAATTTTAAAGGTGGGAGGACACGGAAAAAAACTTTCTAGAAAATTTGTAGAATATGAGCATCCAGTGGAGTTGTACTTGTGCTGCTTGCTACAGTTGGATGTGCCGAGTAGCAATCATCCAATCCTCTGAGCTACGGTAGCTACGGTAGACGAAGGTTGTTTGAACACCAATAACTGTACACCATCACGTCAAAATGCACACCTCAAAAGCTGGATAATATTCTACCCTTCCTTCTTTAAAATC</canonical_amplicon>
		<polymorphic_amplicon>AATCCTGGTTAATTTTAAAGGTGGGAGGACACGGAAAAAAACTTTCTAGAAAATTTGTAGAATATGAGCATCCAGTGGAGTTGTACTTGTGCTGCTTGCTACAGTTGGATGTGCCGAGTAGCAATCATCCAATCCTCTGAGCTACGGTAGCTACGGTAGACGAAGGTTGTTTGAACACCAATAACTGTACACCATCACGYCAAAATGCACACCTCAAAAGCTGGATAATATTCTACCCTTCCTTCTTTAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28417</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>213587</contig_pos>
        <strand></strand>
        <context>atctggacct[T/C]gactgtcaag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTCCTATTGATTTTTGGCTATTCTGACCATTTCTCGGGATCTGGACCT</left_flank>
        <right_flank>GACTGTCAAGTTTTCGACCATTAAGAAAACTTTGGAGCGCGTAAAACATG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCGATCTCGTGCATCAAGTCTTTTAACAAAGAGAATCCATAAGCCAAGTCGTTAGACCCAAGGAGATGATTCAACAAAAAGAACTGAAGCAACACGTTTGCGGAGTAAAGAACCTTGATTCCTATGTACAGCATGGTGACGTAGCAACCACAGTGTCTCCCACAGTTTGCACCTAATTGGAGATTAGAGAAACAACTTCTACTATGTCCTTGACGATCAATGTTGGTTAGCTGAAAGAGAGACAAGATGAGCAACGCTTGATAGTCATCCAACCAAACCTGAACCTCGTCTTGCATGTGACGTGCCATTGTGTAGACGGTACGTGTCTTGACTTCAGAGTCCATGAGACGAGCGTCACAGGCCATTTGGACAAGTCCTTGGAGATTGATTCCTGAAAATAATTTTACGGGTTTGTGTACTTACACCCCAAAGATATACAAATCCTTATTTTCCTATTGATTTTTGGCTATTCTGACCATTTCTCGGGATCTGGACCTTGACTGTCAAGTTTTCGACCATTAAGAAAACTTTGGAGCGCGTAAAACATGCATTTTTTAAACTTTGTGTTCACAGAAAACTTTGAAAATTTATAGTTTTTTAGCTACTTGCCAATTCATAAAAGACAGCTGTTTTTTTTACGTTTTCAGTACTAAAACAGACCCGAAAAGGATATCTTTCAGAATTCGGCAAGTAGCTGAAAAAATGGGGATTTTCAACTAGTTATGTGAATGCAGTTCCCAATCTAGGTTATTTTCACACTCTTTAAAGTTTTCAGAAAGGATCGGACAACTTGACAGCCGAGCTTCCGACTTGTGAAAATTGTCAAAATGGTCGTAAATTAACTGAAAAATACTTTTTAAAAATATTTTATTGACCGGAACTGTATCTGATTTTTCAAAAGTGTCAAACGTTTTTTCTCAGTTTTCACTTTGCAAGTCTGTCCTAAAAACCTACCACTGTGCCAATAAAGCAATCCTCTCCAGAGAATGCATGGAACA</canonical>
            <polymorphic>ACTCGATCTCGTGCATCAAGTCTTTTAACAAAGAGAATCCATAAGCCAAGTCGTTAGACCCAAGGAGATGATTCAACAAAAAGAACTGAAGCAACACGTTTGCGGAGTAAAGAACCTTGATTCCTATGTACAGCATGGTGACGTAGCAACCACAGTGTCTCCCACAGTTTGCACCTAATTGGAGATTAGAGAAACAACTTCTACTATGTCCTTGACGATCAATGTTGGTTAGCTGAAAGAGAGACAAGATGAGCAACGCTTGATAGTCATCCAACCAAACCTGAACCTCGTCTTGCATGTGACGTGCCATTGTGTAGACGGTACGTGTCTTGACTTCAGAGTCCATGAGACGAGCGTCACAGGCCATTTGGACAAGTCCTTGGAGATTGATTCCTGAAAATAATTTTACGGGTTTGTGTACTTACACCCCAAAGATATACAAATCCTTATTTTCCTATTGATTTTTGGCTATTCTGACCATTTCTCGGGATCTGGACCTYGACTGTCAAGTTTTCGACCATTAAGAAAACTTTGGAGCGCGTAAAACATGCATTTTTTAAACTTTGTGTTCACAGAAAACTTTGAAAATTTATAGTTTTTTAGCTACTTGCCAATTCATAAAAGACAGCTGTTTTTTTTACGTTTTCAGTACTAAAACAGACCCGAAAAGGATATCTTTCAGAATTCGGCAAGTAGCTGAAAAAATGGGGATTTTCAACTAGTTATGTGAATGCAGTTCCCAATCTAGGTTATTTTCACACTCTTTAAAGTTTTCAGAAAGGATCGGACAACTTGACAGCCGAGCTTCCGACTTGTGAAAATTGTCAAAATGGTCGTAAATTAACTGAAAAATACTTTTTAAAAATATTTTATTGACCGGAACTGTATCTGATTTTTCAAAAGTGTCAAACGTTTTTTCTCAGTTTTCACTTTGCAAGTCTGTCCTAAAAACCTACCACTGTGCCAATAAAGCAATCCTCTCCAGAGAATGCATGGAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTACGGGTTTGTGTACTTA</pcr_primer_p1>
		<pcr_primer_p2>TGACACTTTTGAAAAATCAGATA</pcr_primer_p2>
		<pcr_amplicon_size>507</pcr_amplicon_size>
		<canonical_amplicon>AATTTTACGGGTTTGTGTACTTACACCCCAAAGATATACAAATCCTTATTTTCCTATTGATTTTTGGCTATTCTGACCATTTCTCGGGATCTGGACCTTGACTGTCAAGTTTTCGACCATTAAGAAAACTTTGGAGCGCGTAAAACATGCATTTTTTAAACTTTGTGTTCACAGAAAACTTTGAAAATTTATAGTTTTTTAGCTACTTGCCAATTCATAAAAGACAGCTGTTTTTTTTACGTTTTCAGTACTAAAACAGACCCGAAAAGGATATCTTTCAGAATTCGGCAAGTAGCTGAAAAAATGGGGATTTTCAACTAGTTATGTGAATGCAGTTCCCAATCTAGGTTATTTTCACACTCTTTAAAGTTTTCAGAAAGGATCGGACAACTTGACAGCCGAGCTTCCGACTTGTGAAAATTGTCAAAATGGTCGTAAATTAACTGAAAAATACTTTTTAAAAATATTTTATTGACCGGAACTGTATCTGATTTTTCAAAAGTGTCA</canonical_amplicon>
		<polymorphic_amplicon>AATTTTACGGGTTTGTGTACTTACACCCCAAAGATATACAAATCCTTATTTTCCTATTGATTTTTGGCTATTCTGACCATTTCTCGGGATCTGGACCTYGACTGTCAAGTTTTCGACCATTAAGAAAACTTTGGAGCGCGTAAAACATGCATTTTTTAAACTTTGTGTTCACAGAAAACTTTGAAAATTTATAGTTTTTTAGCTACTTGCCAATTCATAAAAGACAGCTGTTTTTTTTACGTTTTCAGTACTAAAACAGACCCGAAAAGGATATCTTTCAGAATTCGGCAAGTAGCTGAAAAAATGGGGATTTTCAACTAGTTATGTGAATGCAGTTCCCAATCTAGGTTATTTTCACACTCTTTAAAGTTTTCAGAAAGGATCGGACAACTTGACAGCCGAGCTTCCGACTTGTGAAAATTGTCAAAATGGTCGTAAATTAACTGAAAAATACTTTTTAAAAATATTTTATTGACCGGAACTGTATCTGATTTTTCAAAAGTGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28418</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>295025</contig_pos>
        <strand>+</strand>
        <context>AATTTTTGAT[G/T]GTTTTSGKCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAACATTGCGCTAGTGGCATCCGACACAAATCTGAAATCCAATTTTTGAT</left_flank>
        <right_flank>GTTTTCGGCATCTGCCACAGCACTCACTCCTCTCTGAACATATCACCCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCCAAACAGGAGCTTCTTTCTGAAATCGACAAATAGTTGAAAAACTAGGTATTTTCAAAAACTTCTGTGAATGCAAGTTTTTTAATTTACGTATGTTTTGAACCCTCGACAGTTTTCAAGGTGTTTGGAAGGTGTTTGAAAACTTGACAGCTCAGGACTTTTGAAACTGGTCAAAATAGCTGAAATCAACTGAAAATGACGTTTTTGTATATCTTATTGATCAGTACTTTAGAATTCTTGGTTCAGTTTTTATCAGTTTATTTGTCTCTACCTTTACTCCAGCAGCCAGTGCAAATCCACCACCTAACAAGAAAAGCACACTCCATGGGAATCTATCTTGCACTGTTGCCCAATCAAGAAGACCACTGCTAGCTTTCTGAGCCTCGTTTTTGTTTCTTCCTCTCAAATTTGGAAGCTTTTCCGGAAGAGTGAAGAGCAGAATGACAATGAACATTGCGCTAGTGGCATCCGACACAAATCTGAAATCCAATTTTTGATTGTTTTCGGCATCTGCCACAGCACTCACTCCTCTCTGAACATATCACCCCATCCCGGTACAACTTGTGGCTCTCGGAGGATCCATAAAAGAAGAAGAAGTGCGAAACAGAACACGACTGAGATTTCGGCAAATGAGAGATTGTTGAGCTCATTGTATTTTTGTTGTAGTTTTCTGTTGACGATGATAGATCCCTTTGGAGCTCCGCGGAGATAGAGAAGGTACAGAACGCACCTGAAAACATTTTTGGAGGTCAGATGCATATGATTATGATGAAAAAATGTACCAGCAGTAGATGAGGCAGCAGAAAACCATCGGGAATGCAAAAATCAGCCAGGATAAGAAATTGACTCCAGTATCGGCACCGGGGAAGAGTCTGGAACAAGGGAAAAATTTTACAGATTTTACGGTAATTTTGATATTTTTGAAAATTTTCGGGCTGTCGTAAAATCCGTAAAACCCATAAAATTAGCAAAATGACGGTGTTTGTCACAATAATTAGT</canonical>
            <polymorphic>GGCCAAACAGGAGCTTCTTTCTGAAATCGACAAATAGTTGAAAAACTAGGTATTTTCAAAAACTTCTGTGAATGCAAGTTTTTTAATTTACGTATGTTTTGAACCCTCGACAGTTTTCAAGGTGTTTGGAAGGTGTTTGAAAACTTGACAGCTCAGGACTTTTGAAACTGGTCAAAATAGCTGAAATCAACTGAAAATGACGTTTTTGTATATCTTATTGATCAGTACTTTAGAATTCTTGGTTCAGTTTTTATCAGTTTATTTGTCTCTACCTTTACTCCAGCAGCCAGTGCAAATCCACCACCTAACAAGAAAAGCACACTCCATGGGAATCTATCTTGCACTGTTGCCCAATCAAGAAGACCACTGCTAGCTTTCTGAGCCTCGTTTTTGTTTCTTCCTCTCAAATTTGGAAGCTTTTCCGGAAGAGTGAAGAGCAGAATGACAATGAACATTGCGCTAGTGGCATCCGACACAAATCTGAAATCCAATTTTTGATKGTTTTCGGCATCTGCCACAGCACTCACTCCTCTCTGAACATATCACCCCATCCCGGTACAACTTGTGGCTCTCGGAGGATCCATAAAAGAAGAAGAAGTGCGAAACAGAACACGACTGAGATTTCGGCAAATGAGAGATTGTTGAGCTCATTGTATTTTTGTTGTAGTTTTCTGTTGACGATGATAGATCCCTTTGGAGCTCCGCGGAGATAGAGAAGGTACAGAACGCACCTGAAAACATTTTTGGAGGTCAGATGCATATGATTATGATGAAAAAATGTACCAGCAGTAGATGAGGCAGCAGAAAACCATCGGGAATGCAAAAATCAGCCAGGATAAGAAATTGACTCCAGTATCGGCACCGGGGAAGAGTCTGGAACAAGGGAAAAATTTTACAGATTTTACGGTAATTTTGATATTTTTGAAAATTTTCGGGCTGTCGTAAAATCCGTAAAACCCATAAAATTAGCAAAATGACGGTGTTTGTCACAATAATTAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTGAAGAGCAGAATGACAAT</pcr_primer_p1>
		<pcr_primer_p2>TCAACAGAAAACTACAACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAGTGAAGAGCAGAATGACAATGAACATTGCGCTAGTGGCATCCGACACAAATCTGAAATCCAATTTTTGATTGTTTTCGGCATCTGCCACAGCACTCACTCCTCTCTGAACATATCACCCCATCCCGGTACAACTTGTGGCTCTCGGAGGATCCATAAAAGAAGAAGAAGTGCGAAACAGAACACGACTGAGATTTCGGCAAATGAGAGATTGTTGAGCTCATTGTATTTTTGTTGTAGTTTTCTGTTGA</canonical_amplicon>
		<polymorphic_amplicon>GAGTGAAGAGCAGAATGACAATGAACATTGCGCTAGTGGCATCCGACACAAATCTGAAATCCAATTTTTGATKGTTTTCGGCATCTGCCACAGCACTCACTCCTCTCTGAACATATCACCCCATCCCGGTACAACTTGTGGCTCTCGGAGGATCCATAAAAGAAGAAGAAGTGCGAAACAGAACACGACTGAGATTTCGGCAAATGAGAGATTGTTGAGCTCATTGTATTTTTGTTGTAGTTTTCTGTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28419</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>295031</contig_pos>
        <strand>+</strand>
        <context>TGATKGTTTT[C/G]GKCATCTGCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGCGCTAGTGGCATCCGACACAAATCTGAAATCCAATTTTTGATTGTTTT</left_flank>
        <right_flank>GGCATCTGCCACAGCACTCACTCCTCTCTGAACATATCACCCCATCCCGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGGAGCTTCTTTCTGAAATCGACAAATAGTTGAAAAACTAGGTATTTTCAAAAACTTCTGTGAATGCAAGTTTTTTAATTTACGTATGTTTTGAACCCTCGACAGTTTTCAAGGTGTTTGGAAGGTGTTTGAAAACTTGACAGCTCAGGACTTTTGAAACTGGTCAAAATAGCTGAAATCAACTGAAAATGACGTTTTTGTATATCTTATTGATCAGTACTTTAGAATTCTTGGTTCAGTTTTTATCAGTTTATTTGTCTCTACCTTTACTCCAGCAGCCAGTGCAAATCCACCACCTAACAAGAAAAGCACACTCCATGGGAATCTATCTTGCACTGTTGCCCAATCAAGAAGACCACTGCTAGCTTTCTGAGCCTCGTTTTTGTTTCTTCCTCTCAAATTTGGAAGCTTTTCCGGAAGAGTGAAGAGCAGAATGACAATGAACATTGCGCTAGTGGCATCCGACACAAATCTGAAATCCAATTTTTGATTGTTTTCGGCATCTGCCACAGCACTCACTCCTCTCTGAACATATCACCCCATCCCGGTACAACTTGTGGCTCTCGGAGGATCCATAAAAGAAGAAGAAGTGCGAAACAGAACACGACTGAGATTTCGGCAAATGAGAGATTGTTGAGCTCATTGTATTTTTGTTGTAGTTTTCTGTTGACGATGATAGATCCCTTTGGAGCTCCGCGGAGATAGAGAAGGTACAGAACGCACCTGAAAACATTTTTGGAGGTCAGATGCATATGATTATGATGAAAAAATGTACCAGCAGTAGATGAGGCAGCAGAAAACCATCGGGAATGCAAAAATCAGCCAGGATAAGAAATTGACTCCAGTATCGGCACCGGGGAAGAGTCTGGAACAAGGGAAAAATTTTACAGATTTTACGGTAATTTTGATATTTTTGAAAATTTTCGGGCTGTCGTAAAATCCGTAAAACCCATAAAATTAGCAAAATGACGGTGTTTGTCACAATAATTAGTTTCTTC</canonical>
            <polymorphic>ACAGGAGCTTCTTTCTGAAATCGACAAATAGTTGAAAAACTAGGTATTTTCAAAAACTTCTGTGAATGCAAGTTTTTTAATTTACGTATGTTTTGAACCCTCGACAGTTTTCAAGGTGTTTGGAAGGTGTTTGAAAACTTGACAGCTCAGGACTTTTGAAACTGGTCAAAATAGCTGAAATCAACTGAAAATGACGTTTTTGTATATCTTATTGATCAGTACTTTAGAATTCTTGGTTCAGTTTTTATCAGTTTATTTGTCTCTACCTTTACTCCAGCAGCCAGTGCAAATCCACCACCTAACAAGAAAAGCACACTCCATGGGAATCTATCTTGCACTGTTGCCCAATCAAGAAGACCACTGCTAGCTTTCTGAGCCTCGTTTTTGTTTCTTCCTCTCAAATTTGGAAGCTTTTCCGGAAGAGTGAAGAGCAGAATGACAATGAACATTGCGCTAGTGGCATCCGACACAAATCTGAAATCCAATTTTTGATTGTTTTSGGCATCTGCCACAGCACTCACTCCTCTCTGAACATATCACCCCATCCCGGTACAACTTGTGGCTCTCGGAGGATCCATAAAAGAAGAAGAAGTGCGAAACAGAACACGACTGAGATTTCGGCAAATGAGAGATTGTTGAGCTCATTGTATTTTTGTTGTAGTTTTCTGTTGACGATGATAGATCCCTTTGGAGCTCCGCGGAGATAGAGAAGGTACAGAACGCACCTGAAAACATTTTTGGAGGTCAGATGCATATGATTATGATGAAAAAATGTACCAGCAGTAGATGAGGCAGCAGAAAACCATCGGGAATGCAAAAATCAGCCAGGATAAGAAATTGACTCCAGTATCGGCACCGGGGAAGAGTCTGGAACAAGGGAAAAATTTTACAGATTTTACGGTAATTTTGATATTTTTGAAAATTTTCGGGCTGTCGTAAAATCCGTAAAACCCATAAAATTAGCAAAATGACGGTGTTTGTCACAATAATTAGTTTCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTGAAGAGCAGAATGACAAT</pcr_primer_p1>
		<pcr_primer_p2>TCAACAGAAAACTACAACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAGTGAAGAGCAGAATGACAATGAACATTGCGCTAGTGGCATCCGACACAAATCTGAAATCCAATTTTTGATTGTTTTCGGCATCTGCCACAGCACTCACTCCTCTCTGAACATATCACCCCATCCCGGTACAACTTGTGGCTCTCGGAGGATCCATAAAAGAAGAAGAAGTGCGAAACAGAACACGACTGAGATTTCGGCAAATGAGAGATTGTTGAGCTCATTGTATTTTTGTTGTAGTTTTCTGTTGA</canonical_amplicon>
		<polymorphic_amplicon>GAGTGAAGAGCAGAATGACAATGAACATTGCGCTAGTGGCATCCGACACAAATCTGAAATCCAATTTTTGATTGTTTTSGGCATCTGCCACAGCACTCACTCCTCTCTGAACATATCACCCCATCCCGGTACAACTTGTGGCTCTCGGAGGATCCATAAAAGAAGAAGAAGTGCGAAACAGAACACGACTGAGATTTCGGCAAATGAGAGATTGTTGAGCTCATTGTATTTTTGTTGTAGTTTTCTGTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28420</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>312373</contig_pos>
        <strand></strand>
        <context>gcattctctg[C/T]cagagccgaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTACTGTGCAACTTGTGAACCTCGAGTCACTTCAAGACGCATTCTCTG</left_flank>
        <right_flank>CAGAGCCGAAAATAGTGTTGTACAGAAAAATTCAAACTGGTATTTCAGAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCACTATTACACAAGTTTCCATCGCAGGTACACACTTCCAGGTTACCCTCGCCACTGGTGATTTTGGTACAATCCGATCGGATTTGTTCTTTGGCATTTGGAATACAACTTCGCCACACATGACTTATGCCTGAATCGAAATTCAAATTATATGAAAAAATGAGAAAAACAAACCACTTTTCTCCTGGAAAATCATTTTCATACAGACCCCATTTGAGCATTCATTACTTCGGACACCATCCCGAAGTGCTTGATCAACCTGGAAGAATCAAACATCATGAAAGACGATGTTTACCCTGCAAATCGGTTCTAAGAAAAACAGCATTTGTGGTTCAGGTTGCATTTTTATTTTGAAATTCTGAGATCACAGGTATGCTCTAAATTTCTAAGAATGGGAATCATATTTTTGATTTTTATTTCACAACATTTTCATCTTTTTTTTTTGAAGGATTACTGTGCAACTTGTGAACCTCGAGTCACTTCAAGACGCATTCTCTGCCAGAGCCGAAAATAGTGTTGTACAGAAAAATTCAAACTGGTATTTCAGAGTTGATATTATATGCATTGAAGGTCAGGATCCTTCTAAGTTGAAAACTGCACATTTGGTTCGGACCCACACAGTACGGTCCAAAAAATGAAAAATTTTCCCGTTGGAGATAATGATTAGATTTGATTTGGTTTAGTTCATTATTGCAATTTTGAGCTTTTTTGTGTTGCGACCAACATTTTGGCTCTTTTCCTTTCAGCTGAAAATTCTGATTTTTGTTTCGATTTTGAAAAAATTACAGAAAATCTGCCGTCGCAAAAAACGTTAACATTATTTTCAAAAATAACATTAGATTCAAATCAGGCGTACAAAATAACACTAGAAAATGTTTATTTGAAATGGAATATTCTGTGTCTTATGCCAGTTTTAGGCCAACAAGTGAGGAAAAATGAGGTTTCACCATGTGGAGTACATGGAATCTAAAATTCGCCCAAATTCGTTTCTTGTAAAAT</canonical>
            <polymorphic>TTCACTATTACACAAGTTTCCATCGCAGGTACACACTTCCAGGTTACCCTCGCCACTGGTGATTTTGGTACAATCCGATCGGATTTGTTCTTTGGCATTTGGAATACAACTTCGCCACACATGACTTATGCCTGAATCGAAATTCAAATTATATGAAAAAATGAGAAAAACAAACCACTTTTCTCCTGGAAAATCATTTTCATACAGACCCCATTTGAGCATTCATTACTTCGGACACCATCCCGAAGTGCTTGATCAACCTGGAAGAATCAAACATCATGAAAGACGATGTTTACCCTGCAAATCGGTTCTAAGAAAAACAGCATTTGTGGTTCAGGTTGCATTTTTATTTTGAAATTCTGAGATCACAGGTATGCTCTAAATTTCTAAGAATGGGAATCATATTTTTGATTTTTATTTCACAACATTTTCATCTTTTTTTTTTGAAGGATTACTGTGCAACTTGTGAACCTCGAGTCACTTCAAGACGCATTCTCTGYCAGAGCCGAAAATAGTGTTGTACAGAAAAATTCAAACTGGTATTTCAGAGTTGATATTATATGCATTGAAGGTCAGGATCCTTCTAAGTTGAAAACTGCACATTTGGTTCGGACCCACACAGTACGGTCCAAAAAATGAAAAATTTTCCCGTTGGAGATAATGATTAGATTTGATTTGGTTTAGTTCATTATTGCAATTTTGAGCTTTTTTGTGTTGCGACCAACATTTTGGCTCTTTTCCTTTCAGCTGAAAATTCTGATTTTTGTTTCGATTTTGAAAAAATTACAGAAAATCTGCCGTCGCAAAAAACGTTAACATTATTTTCAAAAATAACATTAGATTCAAATCAGGCGTACAAAATAACACTAGAAAATGTTTATTTGAAATGGAATATTCTGTGTCTTATGCCAGTTTTAGGCCAACAAGTGAGGAAAAATGAGGTTTCACCATGTGGAGTACATGGAATCTAAAATTCGCCCAAATTCGTTTCTTGTAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCANNNNNTGC</site>
                <isoschizomers>
                    <enzyme>ApaBI</enzyme>
                    <enzyme>BstAPI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCACAACATTTTCATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGTCTGTTGACCACTTTTATACAT</pcr_primer_p2>
		<pcr_amplicon_size>607</pcr_amplicon_size>
		<canonical_amplicon>TTTCACAACATTTTCATCTTTTTTTTTTGAAGGATTACTGTGCAACTTGTGAACCTCGAGTCACTTCAAGACGCATTCTCTGCCAGAGCCGAAAATAGTGTTGTAC</canonical_amplicon>
		<polymorphic_amplicon>TTTCACAACATTTTCATCTTTTTTTTTTGAAGGATTACTGTGCAACTTGTGAACCTCGAGTCACTTCAAGACGCATTCTCTGYCAGAGCCGAAAATAGTGTTGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28421</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>312391</contig_pos>
        <strand></strand>
        <context>gaaaatagtg[T/C]tgtacagaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAACCTCGAGTCACTTCAAGACGCATTCTCTGCCAGAGCCGAAAATAGTG</left_flank>
        <right_flank>TGTACAGAAAAATTCAAACTGGTATTTCAGAGTTGATATTATATGCATTG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCATCGCAGGTACACACTTCCAGGTTACCCTCGCCACTGGTGATTTTGGTACAATCCGATCGGATTTGTTCTTTGGCATTTGGAATACAACTTCGCCACACATGACTTATGCCTGAATCGAAATTCAAATTATATGAAAAAATGAGAAAAACAAACCACTTTTCTCCTGGAAAATCATTTTCATACAGACCCCATTTGAGCATTCATTACTTCGGACACCATCCCGAAGTGCTTGATCAACCTGGAAGAATCAAACATCATGAAAGACGATGTTTACCCTGCAAATCGGTTCTAAGAAAAACAGCATTTGTGGTTCAGGTTGCATTTTTATTTTGAAATTCTGAGATCACAGGTATGCTCTAAATTTCTAAGAATGGGAATCATATTTTTGATTTTTATTTCACAACATTTTCATCTTTTTTTTTTGAAGGATTACTGTGCAACTTGTGAACCTCGAGTCACTTCAAGACGCATTCTCTGCCAGAGCCGAAAATAGTGTTGTACAGAAAAATTCAAACTGGTATTTCAGAGTTGATATTATATGCATTGAAGGTCAGGATCCTTCTAAGTTGAAAACTGCACATTTGGTTCGGACCCACACAGTACGGTCCAAAAAATGAAAAATTTTCCCGTTGGAGATAATGATTAGATTTGATTTGGTTTAGTTCATTATTGCAATTTTGAGCTTTTTTGTGTTGCGACCAACATTTTGGCTCTTTTCCTTTCAGCTGAAAATTCTGATTTTTGTTTCGATTTTGAAAAAATTACAGAAAATCTGCCGTCGCAAAAAACGTTAACATTATTTTCAAAAATAACATTAGATTCAAATCAGGCGTACAAAATAACACTAGAAAATGTTTATTTGAAATGGAATATTCTGTGTCTTATGCCAGTTTTAGGCCAACAAGTGAGGAAAAATGAGGTTTCACCATGTGGAGTACATGGAATCTAAAATTCGCCCAAATTCGTTTCTTGTAAAATATGTATAAAAGTGGTCAA</canonical>
            <polymorphic>TCCATCGCAGGTACACACTTCCAGGTTACCCTCGCCACTGGTGATTTTGGTACAATCCGATCGGATTTGTTCTTTGGCATTTGGAATACAACTTCGCCACACATGACTTATGCCTGAATCGAAATTCAAATTATATGAAAAAATGAGAAAAACAAACCACTTTTCTCCTGGAAAATCATTTTCATACAGACCCCATTTGAGCATTCATTACTTCGGACACCATCCCGAAGTGCTTGATCAACCTGGAAGAATCAAACATCATGAAAGACGATGTTTACCCTGCAAATCGGTTCTAAGAAAAACAGCATTTGTGGTTCAGGTTGCATTTTTATTTTGAAATTCTGAGATCACAGGTATGCTCTAAATTTCTAAGAATGGGAATCATATTTTTGATTTTTATTTCACAACATTTTCATCTTTTTTTTTTGAAGGATTACTGTGCAACTTGTGAACCTCGAGTCACTTCAAGACGCATTCTCTGCCAGAGCCGAAAATAGTGYTGTACAGAAAAATTCAAACTGGTATTTCAGAGTTGATATTATATGCATTGAAGGTCAGGATCCTTCTAAGTTGAAAACTGCACATTTGGTTCGGACCCACACAGTACGGTCCAAAAAATGAAAAATTTTCCCGTTGGAGATAATGATTAGATTTGATTTGGTTTAGTTCATTATTGCAATTTTGAGCTTTTTTGTGTTGCGACCAACATTTTGGCTCTTTTCCTTTCAGCTGAAAATTCTGATTTTTGTTTCGATTTTGAAAAAATTACAGAAAATCTGCCGTCGCAAAAAACGTTAACATTATTTTCAAAAATAACATTAGATTCAAATCAGGCGTACAAAATAACACTAGAAAATGTTTATTTGAAATGGAATATTCTGTGTCTTATGCCAGTTTTAGGCCAACAAGTGAGGAAAAATGAGGTTTCACCATGTGGAGTACATGGAATCTAAAATTCGCCCAAATTCGTTTCTTGTAAAATATGTATAAAAGTGGTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACTTGTGAACCTCGAGTC</pcr_primer_p1>
		<pcr_primer_p2>TGTCTGTTGACCACTTTTATACAT</pcr_primer_p2>
		<pcr_amplicon_size>565</pcr_amplicon_size>
		<canonical_amplicon>CAACTTGTGAACCTCGAGTCACTTCAAGACGCATTCTCTGCCAGAGCCGAAAATAGTGTTGTACAGAAAAATTCAAACTGGT</canonical_amplicon>
		<polymorphic_amplicon>CAACTTGTGAACCTCGAGTCACTTCAAGACGCATTCTCTGCCAGAGCCGAAAATAGTGYTGTACAGAAAAATTCAAACTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28422</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>312415</contig_pos>
        <strand></strand>
        <context>tcaaactggt[A/T]tttcagagtt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTCTCTGCCAGAGCCGAAAATAGTGTTGTACAGAAAAATTCAAACTGGT</left_flank>
        <right_flank>TTTCAGAGTTGATATTATATGCATTGAAGGTCAGGATCCTTCTAAGTTGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTACCCTCGCCACTGGTGATTTTGGTACAATCCGATCGGATTTGTTCTTTGGCATTTGGAATACAACTTCGCCACACATGACTTATGCCTGAATCGAAATTCAAATTATATGAAAAAATGAGAAAAACAAACCACTTTTCTCCTGGAAAATCATTTTCATACAGACCCCATTTGAGCATTCATTACTTCGGACACCATCCCGAAGTGCTTGATCAACCTGGAAGAATCAAACATCATGAAAGACGATGTTTACCCTGCAAATCGGTTCTAAGAAAAACAGCATTTGTGGTTCAGGTTGCATTTTTATTTTGAAATTCTGAGATCACAGGTATGCTCTAAATTTCTAAGAATGGGAATCATATTTTTGATTTTTATTTCACAACATTTTCATCTTTTTTTTTTGAAGGATTACTGTGCAACTTGTGAACCTCGAGTCACTTCAAGACGCATTCTCTGCCAGAGCCGAAAATAGTGTTGTACAGAAAAATTCAAACTGGTATTTCAGAGTTGATATTATATGCATTGAAGGTCAGGATCCTTCTAAGTTGAAAACTGCACATTTGGTTCGGACCCACACAGTACGGTCCAAAAAATGAAAAATTTTCCCGTTGGAGATAATGATTAGATTTGATTTGGTTTAGTTCATTATTGCAATTTTGAGCTTTTTTGTGTTGCGACCAACATTTTGGCTCTTTTCCTTTCAGCTGAAAATTCTGATTTTTGTTTCGATTTTGAAAAAATTACAGAAAATCTGCCGTCGCAAAAAACGTTAACATTATTTTCAAAAATAACATTAGATTCAAATCAGGCGTACAAAATAACACTAGAAAATGTTTATTTGAAATGGAATATTCTGTGTCTTATGCCAGTTTTAGGCCAACAAGTGAGGAAAAATGAGGTTTCACCATGTGGAGTACATGGAATCTAAAATTCGCCCAAATTCGTTTCTTGTAAAATATGTATAAAAGTGGTCAACAGACATAATGATCATTCCCTCTT</canonical>
            <polymorphic>GTTACCCTCGCCACTGGTGATTTTGGTACAATCCGATCGGATTTGTTCTTTGGCATTTGGAATACAACTTCGCCACACATGACTTATGCCTGAATCGAAATTCAAATTATATGAAAAAATGAGAAAAACAAACCACTTTTCTCCTGGAAAATCATTTTCATACAGACCCCATTTGAGCATTCATTACTTCGGACACCATCCCGAAGTGCTTGATCAACCTGGAAGAATCAAACATCATGAAAGACGATGTTTACCCTGCAAATCGGTTCTAAGAAAAACAGCATTTGTGGTTCAGGTTGCATTTTTATTTTGAAATTCTGAGATCACAGGTATGCTCTAAATTTCTAAGAATGGGAATCATATTTTTGATTTTTATTTCACAACATTTTCATCTTTTTTTTTTGAAGGATTACTGTGCAACTTGTGAACCTCGAGTCACTTCAAGACGCATTCTCTGCCAGAGCCGAAAATAGTGTTGTACAGAAAAATTCAAACTGGTWTTTCAGAGTTGATATTATATGCATTGAAGGTCAGGATCCTTCTAAGTTGAAAACTGCACATTTGGTTCGGACCCACACAGTACGGTCCAAAAAATGAAAAATTTTCCCGTTGGAGATAATGATTAGATTTGATTTGGTTTAGTTCATTATTGCAATTTTGAGCTTTTTTGTGTTGCGACCAACATTTTGGCTCTTTTCCTTTCAGCTGAAAATTCTGATTTTTGTTTCGATTTTGAAAAAATTACAGAAAATCTGCCGTCGCAAAAAACGTTAACATTATTTTCAAAAATAACATTAGATTCAAATCAGGCGTACAAAATAACACTAGAAAATGTTTATTTGAAATGGAATATTCTGTGTCTTATGCCAGTTTTAGGCCAACAAGTGAGGAAAAATGAGGTTTCACCATGTGGAGTACATGGAATCTAAAATTCGCCCAAATTCGTTTCTTGTAAAATATGTATAAAAGTGGTCAACAGACATAATGATCATTCCCTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACTTGTGAACCTCGAGTC</pcr_primer_p1>
		<pcr_primer_p2>TGTCTGTTGACCACTTTTATACAT</pcr_primer_p2>
		<pcr_amplicon_size>565</pcr_amplicon_size>
		<canonical_amplicon>CAACTTGTGAACCTCGAGTCACTTCAAGACGCATTCTCTGCCAGAGCCGAAAATAGTGTTGTACAGAAAAATTCAAACTGGTATTTCAGAGTTGATATTATATGCATTGAAGGTCAGGATCCTTCTAAGTTGAAAACTGCACATTTGGTTCGGACCCACACAGTACGGTCCAAAAAATGAAAAATTTTCCCGTTGGAGATAATGATTAGATTTGATTTGGTTTAGTTCATTATTGCAATTTTGAGCTTTTTTGTGTTGCGACCAACATTTTGGCTCTTTTCCTTTCAGCTGAAAATTCTGATTTTTGTTTCGATTTTGAAAAAATTACAGAAAATCTGCCGTCGCAAAAAACGTTAACATTATTTTCAAAAATAACATTAGATTCAAATCAGGCGTACAAAATAACACTAGAAAATGTTTATTTGAAATGGAATATTCTGTGTCTTATGCCAGTTTTAGGCCAACAAGTGAGGAAAAATGAGGTTTCACCATGTGGAGTACATGGAATCTAAAATTCGCCCAAATTCGTTTCTTGTAAAATATGTATAAAAGTGGTCAACAGACA</canonical_amplicon>
		<polymorphic_amplicon>CAACTTGTGAACCTCGAGTCACTTCAAGACGCATTCTCTGCCAGAGCCGAAAATAGTGTTGTACAGAAAAATTCAAACTGGTWTTTCAGAGTTGATATTATATGCATTGAAGGTCAGGATCCTTCTAAGTTGAAAACTGCACATTTGGTTCGGACCCACACAGTACGGTCCAAAAAATGAAAAATTTTCCCGTTGGAGATAATGATTAGATTTGATTTGGTTTAGTTCATTATTGCAATTTTGAGCTTTTTTGTGTTGCGACCAACATTTTGGCTCTTTTCCTTTCAGCTGAAAATTCTGATTTTTGTTTCGATTTTGAAAAAATTACAGAAAATCTGCCGTCGCAAAAAACGTTAACATTATTTTCAAAAATAACATTAGATTCAAATCAGGCGTACAAAATAACACTAGAAAATGTTTATTTGAAATGGAATATTCTGTGTCTTATGCCAGTTTTAGGCCAACAAGTGAGGAAAAATGAGGTTTCACCATGTGGAGTACATGGAATCTAAAATTCGCCCAAATTCGTTTCTTGTAAAATATGTATAAAAGTGGTCAACAGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28423</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>312452</contig_pos>
        <strand></strand>
        <context>aaggtcagga[T/C]ccttctaagt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATTCAAACTGGTATTTCAGAGTTGATATTATATGCATTGAAGGTCAGGA</left_flank>
        <right_flank>CCTTCTAAGTTGAAAACTGCACATTTGGTTCGGACCCACACAGTACGGTC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGATTTGTTCTTTGGCATTTGGAATACAACTTCGCCACACATGACTTATGCCTGAATCGAAATTCAAATTATATGAAAAAATGAGAAAAACAAACCACTTTTCTCCTGGAAAATCATTTTCATACAGACCCCATTTGAGCATTCATTACTTCGGACACCATCCCGAAGTGCTTGATCAACCTGGAAGAATCAAACATCATGAAAGACGATGTTTACCCTGCAAATCGGTTCTAAGAAAAACAGCATTTGTGGTTCAGGTTGCATTTTTATTTTGAAATTCTGAGATCACAGGTATGCTCTAAATTTCTAAGAATGGGAATCATATTTTTGATTTTTATTTCACAACATTTTCATCTTTTTTTTTTGAAGGATTACTGTGCAACTTGTGAACCTCGAGTCACTTCAAGACGCATTCTCTGCCAGAGCCGAAAATAGTGTTGTACAGAAAAATTCAAACTGGTATTTCAGAGTTGATATTATATGCATTGAAGGTCAGGATCCTTCTAAGTTGAAAACTGCACATTTGGTTCGGACCCACACAGTACGGTCCAAAAAATGAAAAATTTTCCCGTTGGAGATAATGATTAGATTTGATTTGGTTTAGTTCATTATTGCAATTTTGAGCTTTTTTGTGTTGCGACCAACATTTTGGCTCTTTTCCTTTCAGCTGAAAATTCTGATTTTTGTTTCGATTTTGAAAAAATTACAGAAAATCTGCCGTCGCAAAAAACGTTAACATTATTTTCAAAAATAACATTAGATTCAAATCAGGCGTACAAAATAACACTAGAAAATGTTTATTTGAAATGGAATATTCTGTGTCTTATGCCAGTTTTAGGCCAACAAGTGAGGAAAAATGAGGTTTCACCATGTGGAGTACATGGAATCTAAAATTCGCCCAAATTCGTTTCTTGTAAAATATGTATAAAAGTGGTCAACAGACATAATGATCATTCCCTCTTACATGGTCAGTGGAGCATATGTTGATACCTTTTACAA</canonical>
            <polymorphic>CGGATTTGTTCTTTGGCATTTGGAATACAACTTCGCCACACATGACTTATGCCTGAATCGAAATTCAAATTATATGAAAAAATGAGAAAAACAAACCACTTTTCTCCTGGAAAATCATTTTCATACAGACCCCATTTGAGCATTCATTACTTCGGACACCATCCCGAAGTGCTTGATCAACCTGGAAGAATCAAACATCATGAAAGACGATGTTTACCCTGCAAATCGGTTCTAAGAAAAACAGCATTTGTGGTTCAGGTTGCATTTTTATTTTGAAATTCTGAGATCACAGGTATGCTCTAAATTTCTAAGAATGGGAATCATATTTTTGATTTTTATTTCACAACATTTTCATCTTTTTTTTTTGAAGGATTACTGTGCAACTTGTGAACCTCGAGTCACTTCAAGACGCATTCTCTGCCAGAGCCGAAAATAGTGTTGTACAGAAAAATTCAAACTGGTATTTCAGAGTTGATATTATATGCATTGAAGGTCAGGAYCCTTCTAAGTTGAAAACTGCACATTTGGTTCGGACCCACACAGTACGGTCCAAAAAATGAAAAATTTTCCCGTTGGAGATAATGATTAGATTTGATTTGGTTTAGTTCATTATTGCAATTTTGAGCTTTTTTGTGTTGCGACCAACATTTTGGCTCTTTTCCTTTCAGCTGAAAATTCTGATTTTTGTTTCGATTTTGAAAAAATTACAGAAAATCTGCCGTCGCAAAAAACGTTAACATTATTTTCAAAAATAACATTAGATTCAAATCAGGCGTACAAAATAACACTAGAAAATGTTTATTTGAAATGGAATATTCTGTGTCTTATGCCAGTTTTAGGCCAACAAGTGAGGAAAAATGAGGTTTCACCATGTGGAGTACATGGAATCTAAAATTCGCCCAAATTCGTTTCTTGTAAAATATGTATAAAAGTGGTCAACAGACATAATGATCATTCCCTCTTACATGGTCAGTGGAGCATATGTTGATACCTTTTACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGATCC</site>
                <isoschizomers>
                    <enzyme>BamHI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>452 213 174 110 51</canonical_bands>
                <polymorphic_bands>665 174 110 51</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACTTGTGAACCTCGAGTC</pcr_primer_p1>
		<pcr_primer_p2>TGTCTGTTGACCACTTTTATACAT</pcr_primer_p2>
		<pcr_amplicon_size>565</pcr_amplicon_size>
		<canonical_amplicon>CAACTTGTGAACCTCGAGTCACTTCAAGACGCATTCTCTGCCAGAGCCGAAAATAGTGTTGTACAGAAAAATTCAAACTGGTATTTCAGAGTTGATATTATATGCATTGAAGGTCAGGATCCTTCTAAGTTGAAAACTGCACATTTGGTTCGGACCCACACAGTACGGTCCAAAAAATGAAAAATTTTCCCGTTGGAGATAATGATTAGATTTGATTTGGTTTAGTTCATTATTGCAATTTTGAGCTTTTTTGTGTTGCGACCAACATTTTGGCTCTTTTCCTTTCAGCTGAAAATTCTGATTTTTGTTTCGATTTTGAAAAAATTACAGAAAATCTGCCGTCGCAAAAAACGTTAACATTATTTTCAAAAATAACATTAGATTCAAATCAGGCGTACAAAATAACACTAGAAAATGTTTATTTGAAATGGAATATTCTGTGTCTTATGCCAGTTTTAGGCCAACAAGTGAGGAAAAATGAGGTTTCACCATGTGGAGTACATGGAATCTAAAATTCGCCCAAATTCGTTTCTTGTAAAATATGTATAAAAGTGGTCAACAGACA</canonical_amplicon>
		<polymorphic_amplicon>CAACTTGTGAACCTCGAGTCACTTCAAGACGCATTCTCTGCCAGAGCCGAAAATAGTGTTGTACAGAAAAATTCAAACTGGTATTTCAGAGTTGATATTATATGCATTGAAGGTCAGGAYCCTTCTAAGTTGAAAACTGCACATTTGGTTCGGACCCACACAGTACGGTCCAAAAAATGAAAAATTTTCCCGTTGGAGATAATGATTAGATTTGATTTGGTTTAGTTCATTATTGCAATTTTGAGCTTTTTTGTGTTGCGACCAACATTTTGGCTCTTTTCCTTTCAGCTGAAAATTCTGATTTTTGTTTCGATTTTGAAAAAATTACAGAAAATCTGCCGTCGCAAAAAACGTTAACATTATTTTCAAAAATAACATTAGATTCAAATCAGGCGTACAAAATAACACTAGAAAATGTTTATTTGAAATGGAATATTCTGTGTCTTATGCCAGTTTTAGGCCAACAAGTGAGGAAAAATGAGGTTTCACCATGTGGAGTACATGGAATCTAAAATTCGCCCAAATTCGTTTCTTGTAAAATATGTATAAAAGTGGTCAACAGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28424</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>316291</contig_pos>
        <strand>+</strand>
        <context>GATTGACTTC[A/G]AAAAAACGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAAACTTCTCGCTTGACAGAGATTTCGTTAACATTTTTGATTGACTTC</left_flank>
        <right_flank>AAAAAACGGGCTGAACAGAGAAAGTTCTGAAAAAAGCATGATCTGGCCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATTATGAGTGAAAAATGAAAAGATACTGATTTTTTTTAATTAGGAGAGTTTACCAATTCAAGCGCCGCGCAATTGCGCTCCATTTGAAATAATGAACATGGTGAAACGTAAGCTGTTCATCAAAAAACTGCAACTTTTAAATTTGAAGCTCCAGATTTTCCCCTATTAAATGTATTTCAAAAATTTTTCTCGAATCGGAAAAAAAGGGTGATCAGTATTTCTTTGTGCTCTTATTTTTAATCTCGAACAGTAATTTTTGATATTAGCTCAGATTGCCAGAGAGGAAATGAGTTAACATAGTCATACTGAAAAAAAAACTGTGACTGGAGTTCTATCTTTTTATTCAATAAAACAATAGATTGTACAAAACATACTAAAAAAACCACGGCCAGGCCTAGTCGGCCCGAGTTTTTTACATTTGAAAAAGTTTTGAAATTTCAGTAAAGTTTCAAACTTCTCGCTTGACAGAGATTTCGTTAACATTTTTGATTGACTTCAAAAAAACGGGCTGAACAGAGAAAGTTCTGAAAAAAGCATGATCTGGCCCGGCCCTTCGCAAGTATGATTGAAACTCTGAAACGGGAATTTTCAAAATTTTTAACTCGATAAAAAAGGAAATGTCTTTTTAGTAAATGGTTTGCCAGTAACCGTTGTTTCTCATGAAATCTTTATTGAATCTATCTTGCTGAAAAGGTTTTTCAAATTTAAAATTTTCTATGTTCTTTTCAGTCATCTTCGACTTCACCAAAATCTCTGTCCAATGTTTCCCCATTGTCGAATACCTTCTGGACATCACATTTTCCACAAGATTATCTTTTTTATTGACTTCTCATTGATCCTCTTCTATATTATTGATAGTTTCCGGATAATAACATTGTATGTTTCTTGCGCAACATCAATTGAAAAATGAGCCCACAGATGGTAACAACGGATACGGAGAATTGAGGTGTCAGTTTTGCGGATTAGGCGACGTTTGTTTTATTTACGTTTGTTATTGC</canonical>
            <polymorphic>CCATTATGAGTGAAAAATGAAAAGATACTGATTTTTTTTAATTAGGAGAGTTTACCAATTCAAGCGCCGCGCAATTGCGCTCCATTTGAAATAATGAACATGGTGAAACGTAAGCTGTTCATCAAAAAACTGCAACTTTTAAATTTGAAGCTCCAGATTTTCCCCTATTAAATGTATTTCAAAAATTTTTCTCGAATCGGAAAAAAAGGGTGATCAGTATTTCTTTGTGCTCTTATTTTTAATCTCGAACAGTAATTTTTGATATTAGCTCAGATTGCCAGAGAGGAAATGAGTTAACATAGTCATACTGAAAAAAAAACTGTGACTGGAGTTCTATCTTTTTATTCAATAAAACAATAGATTGTACAAAACATACTAAAAAAACCACGGCCAGGCCTAGTCGGCCCGAGTTTTTTACATTTGAAAAAGTTTTGAAATTTCAGTAAAGTTTCAAACTTCTCGCTTGACAGAGATTTCGTTAACATTTTTGATTGACTTCRAAAAAACGGGCTGAACAGAGAAAGTTCTGAAAAAAGCATGATCTGGCCCGGCCCTTCGCAAGTATGATTGAAACTCTGAAACGGGAATTTTCAAAATTTTTAACTCGATAAAAAAGGAAATGTCTTTTTAGTAAATGGTTTGCCAGTAACCGTTGTTTCTCATGAAATCTTTATTGAATCTATCTTGCTGAAAAGGTTTTTCAAATTTAAAATTTTCTATGTTCTTTTCAGTCATCTTCGACTTCACCAAAATCTCTGTCCAATGTTTCCCCATTGTCGAATACCTTCTGGACATCACATTTTCCACAAGATTATCTTTTTTATTGACTTCTCATTGATCCTCTTCTATATTATTGATAGTTTCCGGATAATAACATTGTATGTTTCTTGCGCAACATCAATTGAAAAATGAGCCCACAGATGGTAACAACGGATACGGAGAATTGAGGTGTCAGTTTTGCGGATTAGGCGACGTTTGTTTTATTTACGTTTGTTATTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAACTTCTCGCTTGAC</pcr_primer_p1>
		<pcr_primer_p2>GAAAAACCTTTTCAGCAAGATA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAACTTCTCGCTTGACAGAGATTTCGTTAACATTTTTGATTGACTTCAAAAAAACGGGCTGAACAGAGAAAGTTCTGAAAAAAGCATGATCTGGCCCGGCCCTTCGCAAGTATGATTGAAACTCTGAAACGGGAATTTTCAAAATTTTTAACTCGATAAAAAAGGAAATGTCTTTTTAGTAAATGGTTTGCCAGTAACCGTTGTTTCTCATGAAATCTTTATTGAATCTATCTTGCTGAAAAGGTTTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAACTTCTCGCTTGACAGAGATTTCGTTAACATTTTTGATTGACTTCRAAAAAACGGGCTGAACAGAGAAAGTTCTGAAAAAAGCATGATCTGGCCCGGCCCTTCGCAAGTATGATTGAAACTCTGAAACGGGAATTTTCAAAATTTTTAACTCGATAAAAAAGGAAATGTCTTTTTAGTAAATGGTTTGCCAGTAACCGTTGTTTCTCATGAAATCTTTATTGAATCTATCTTGCTGAAAAGGTTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28425</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>333195</contig_pos>
        <strand></strand>
        <context>tcgaaatttc[G/A]gatttcggaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CATACATTCCAATATTGAAATTACCAGAATTTTGAAAACATCGAAATTTC</left_flank>
        <right_flank>GATTTCGGAATATTCCGATTTTGAAATTTTTGGAAATTTGGAATATTTCG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAATCAAAATTTGCCTCTTGTTCGTTTTTCCGTGACGGTTTTCCTATGAAATGGAGATGGGATGATGAGGAGGCAAGAAGGCAAAATTGGAAGAGAGGAGGGAACAGCAGGAGGACACCCATAACATTTTGTAGATCAAAATAAGATGAAGAAAACAAGGAGGAGTATGAAGAAGGAGTTGAGAACGAATTTCGTAAATTCGGAATACTCCGATTTTGAAATTTTCGGAAACTCGAAAAAATATCCCAATATTCAAAATTTTAGAATTTCTATACATTCCAGTATTGAAATTTTCGCAAATTCTAAATTATCCAATTTTGAAAACATCAAAAGTTCGGAATTTCGAAAAATTCTCTTTTTGAAACTTTCAGAATTTCGGAATATTTCGATCTGAAAAATTTGAATATTCAAAATCTCGGAATATTCCAAGTTTCCAAACCTTAAAATCCATACATTCCAATATTGAAATTACCAGAATTTTGAAAACATCGAAATTTCGGATTTCGGAATATTCCGATTTTGAAATTTTTGGAAATTTGGAATATTTCGGTTTTCAAAATTTCGAAATTTTGTAATTTCAGAATATTTCGGTTTTCGAAATTTTGAAACTTTGGAGTATTCGGAATTTTTCAAACTCCTGGAGACCCACAAACAAATGTTTAGTATGCGCTTTAACATACCGTAGTCCAAAAATTTCAAATTCTACAGAAAATAAAAGGTTTGAAAATATTCCGATCGGAATTTCCTTCCACAAATGATCGGAATTTTTGGAACTTTTGAAAGTATGTCTAATATTCCGATCCAATCCTTATATACCTTTTGTAGACAACTGTTTCCGAGAAAACCAAAGTACCAGGAACACTCCCCCGGCTATGGGGGAGTACTATCAGTTTTAGATTAAATGTTTTGTTCAAAAAGGAAACAATGAAACAAGAAACACATGTGTCAAAAATGAGAGAGCACAAAACAAAAAAAACCAGATACGCTGAGAGTCGTTTT</canonical>
            <polymorphic>GGAATCAAAATTTGCCTCTTGTTCGTTTTTCCGTGACGGTTTTCCTATGAAATGGAGATGGGATGATGAGGAGGCAAGAAGGCAAAATTGGAAGAGAGGAGGGAACAGCAGGAGGACACCCATAACATTTTGTAGATCAAAATAAGATGAAGAAAACAAGGAGGAGTATGAAGAAGGAGTTGAGAACGAATTTCGTAAATTCGGAATACTCCGATTTTGAAATTTTCGGAAACTCGAAAAAATATCCCAATATTCAAAATTTTAGAATTTCTATACATTCCAGTATTGAAATTTTCGCAAATTCTAAATTATCCAATTTTGAAAACATCAAAAGTTCGGAATTTCGAAAAATTCTCTTTTTGAAACTTTCAGAATTTCGGAATATTTCGATCTGAAAAATTTGAATATTCAAAATCTCGGAATATTCCAAGTTTCCAAACCTTAAAATCCATACATTCCAATATTGAAATTACCAGAATTTTGAAAACATCGAAATTTCRGATTTCGGAATATTCCGATTTTGAAATTTTTGGAAATTTGGAATATTTCGGTTTTCAAAATTTCGAAATTTTGTAATTTCAGAATATTTCGGTTTTCGAAATTTTGAAACTTTGGAGTATTCGGAATTTTTCAAACTCCTGGAGACCCACAAACAAATGTTTAGTATGCGCTTTAACATACCGTAGTCCAAAAATTTCAAATTCTACAGAAAATAAAAGGTTTGAAAATATTCCGATCGGAATTTCCTTCCACAAATGATCGGAATTTTTGGAACTTTTGAAAGTATGTCTAATATTCCGATCCAATCCTTATATACCTTTTGTAGACAACTGTTTCCGAGAAAACCAAAGTACCAGGAACACTCCCCCGGCTATGGGGGAGTACTATCAGTTTTAGATTAAATGTTTTGTTCAAAAAGGAAACAATGAAACAAGAAACACATGTGTCAAAAATGAGAGAGCACAAAACAAAAAAAACCAGATACGCTGAGAGTCGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTATGAAGAAGGAGTTGAGAA</pcr_primer_p1>
		<pcr_primer_p2>ACTTTCAAAAGTTCCAAAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>622</pcr_amplicon_size>
		<canonical_amplicon>GAGTATGAAGAAGGAGTTGAGAACGAATTTCGTAAATTCGGAATACTCCGATTTTGAAATTTTCGGAAACTCGAAAAAATATCCCAATATTCAAAATTTTAGAATTTCTATACATTCCAGTATTGAAATTTTCGCAAATTCTAAATTATCCAATTTTGAAAACATCAAAAGTTCGGAATTTCGAAAAATTCTCTTTTTGAAACTTTCAGAATTTCGGAATATTTCGATCTGAAAAATTTGAATATTCAAAATCTCGGAATATTCCAAGTTTCCAAACCTTAAAATCCATACATTCCAATATTGAAATTACCAGAATTTTGAAAACATCGAAATTTCGGATTTCGGAATATTCCGATTTTGAAATTTTTGGAAATTTGGAATATTTCGGTTTTCAAAATTTCGAAATTTTGTAATTTCAGAATATTTCGGTTTTCGAAATTTTGAAACTTTGGAGTATTCGGAATTTTTCAAACTCCTGGAGACCCACAAACAAATGTTTAGTATGCGCTTTAACATACCGTAGTCCAAAAATTTCAAATTCTACAGAAAATAAAAGGTTTGAAAATATTCCGATCGGAATTTCCTTCCACAAATGATCGGAATTTTTGGAACTTTTGAAAGT</canonical_amplicon>
		<polymorphic_amplicon>GAGTATGAAGAAGGAGTTGAGAACGAATTTCGTAAATTCGGAATACTCCGATTTTGAAATTTTCGGAAACTCGAAAAAATATCCCAATATTCAAAATTTTAGAATTTCTATACATTCCAGTATTGAAATTTTCGCAAATTCTAAATTATCCAATTTTGAAAACATCAAAAGTTCGGAATTTCGAAAAATTCTCTTTTTGAAACTTTCAGAATTTCGGAATATTTCGATCTGAAAAATTTGAATATTCAAAATCTCGGAATATTCCAAGTTTCCAAACCTTAAAATCCATACATTCCAATATTGAAATTACCAGAATTTTGAAAACATCGAAATTTCRGATTTCGGAATATTCCGATTTTGAAATTTTTGGAAATTTGGAATATTTCGGTTTTCAAAATTTCGAAATTTTGTAATTTCAGAATATTTCGGTTTTCGAAATTTTGAAACTTTGGAGTATTCGGAATTTTTCAAACTCCTGGAGACCCACAAACAAATGTTTAGTATGCGCTTTAACATACCGTAGTCCAAAAATTTCAAATTCTACAGAAAATAAAAGGTTTGAAAATATTCCGATCGGAATTTCCTTCCACAAATGATCGGAATTTTTGGAACTTTTGAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28426</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>333391</contig_pos>
        <strand></strand>
        <context>gtccaaaaat[T/C]tcaaattcta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCCACAAACAAATGTTTAGTATGCGCTTTAACATACCGTAGTCCAAAAAT</left_flank>
        <right_flank>TCAAATTCTACAGAAAATAAAAGGTTTGAAAATATTCCGATCGGAATTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTCGGAATACTCCGATTTTGAAATTTTCGGAAACTCGAAAAAATATCCCAATATTCAAAATTTTAGAATTTCTATACATTCCAGTATTGAAATTTTCGCAAATTCTAAATTATCCAATTTTGAAAACATCAAAAGTTCGGAATTTCGAAAAATTCTCTTTTTGAAACTTTCAGAATTTCGGAATATTTCGATCTGAAAAATTTGAATATTCAAAATCTCGGAATATTCCAAGTTTCCAAACCTTAAAATCCATACATTCCAATATTGAAATTACCAGAATTTTGAAAACATCGAAATTTCGGATTTCGGAATATTCCGATTTTGAAATTTTTGGAAATTTGGAATATTTCGGTTTTCAAAATTTCGAAATTTTGTAATTTCAGAATATTTCGGTTTTCGAAATTTTGAAACTTTGGAGTATTCGGAATTTTTCAAACTCCTGGAGACCCACAAACAAATGTTTAGTATGCGCTTTAACATACCGTAGTCCAAAAATTTCAAATTCTACAGAAAATAAAAGGTTTGAAAATATTCCGATCGGAATTTCCTTCCACAAATGATCGGAATTTTTGGAACTTTTGAAAGTATGTCTAATATTCCGATCCAATCCTTATATACCTTTTGTAGACAACTGTTTCCGAGAAAACCAAAGTACCAGGAACACTCCCCCGGCTATGGGGGAGTACTATCAGTTTTAGATTAAATGTTTTGTTCAAAAAGGAAACAATGAAACAAGAAACACATGTGTCAAAAATGAGAGAGCACAAAACAAAAAAAACCAGATACGCTGAGAGTCGTTTTTTCTCGGTTTGCGGGGGTGTGTGAACAGACTCAAAAGTGGTAATTGTGTCATAATGGAGTTAGACTTTCTTTTTGCCTATATTTACACCGGAAAAGTGGGCATGTCATGAGTCAGCGATTATTTCAGAGATAGAATTTTGATAAGAAAAAAGGATGACGTGGCTCCAGAGAGTGGACAATAGTAAGGGAAAGACTG</canonical>
            <polymorphic>AAATTCGGAATACTCCGATTTTGAAATTTTCGGAAACTCGAAAAAATATCCCAATATTCAAAATTTTAGAATTTCTATACATTCCAGTATTGAAATTTTCGCAAATTCTAAATTATCCAATTTTGAAAACATCAAAAGTTCGGAATTTCGAAAAATTCTCTTTTTGAAACTTTCAGAATTTCGGAATATTTCGATCTGAAAAATTTGAATATTCAAAATCTCGGAATATTCCAAGTTTCCAAACCTTAAAATCCATACATTCCAATATTGAAATTACCAGAATTTTGAAAACATCGAAATTTCGGATTTCGGAATATTCCGATTTTGAAATTTTTGGAAATTTGGAATATTTCGGTTTTCAAAATTTCGAAATTTTGTAATTTCAGAATATTTCGGTTTTCGAAATTTTGAAACTTTGGAGTATTCGGAATTTTTCAAACTCCTGGAGACCCACAAACAAATGTTTAGTATGCGCTTTAACATACCGTAGTCCAAAAATYTCAAATTCTACAGAAAATAAAAGGTTTGAAAATATTCCGATCGGAATTTCCTTCCACAAATGATCGGAATTTTTGGAACTTTTGAAAGTATGTCTAATATTCCGATCCAATCCTTATATACCTTTTGTAGACAACTGTTTCCGAGAAAACCAAAGTACCAGGAACACTCCCCCGGCTATGGGGGAGTACTATCAGTTTTAGATTAAATGTTTTGTTCAAAAAGGAAACAATGAAACAAGAAACACATGTGTCAAAAATGAGAGAGCACAAAACAAAAAAAACCAGATACGCTGAGAGTCGTTTTTTCTCGGTTTGCGGGGGTGTGTGAACAGACTCAAAAGTGGTAATTGTGTCATAATGGAGTTAGACTTTCTTTTTGCCTATATTTACACCGGAAAAGTGGGCATGTCATGAGTCAGCGATTATTTCAGAGATAGAATTTTGATAAGAAAAAAGGATGACGTGGCTCCAGAGAGTGGACAATAGTAAGGGAAAGACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>370 79 68 63 41 40 37 33 31 25 25 24 24 23 23 23 17 10 10 10 8 8 7 1</canonical_bands>
                <polymorphic_bands>370 79 75 63 41 40 37 33 31 25 25 24 24 23 23 23 17 10 10 10 8 8 1</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>278 92 70 68 63 41 37 31 25 25 25 25 24 24 23 23 23 17 10 10 10 9 8 8 8 8 7 7 1</canonical_bands>
                <polymorphic_bands>278 92 75 70 63 41 37 31 25 25 25 25 24 24 23 23 23 17 10 10 10 9 8 8 8 8 7 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTATGAAGAAGGAGTTGAGAA</pcr_primer_p1>
		<pcr_primer_p2>ACTTTCAAAAGTTCCAAAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>622</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAATTCTACAGAAAATAAAAGGTTTGAAAATATTCCGATCGGAATTTCCTTCCACAAATGATCGGAATTTTTGGAACTTTTGAAAGT</canonical_amplicon>
		<polymorphic_amplicon>TYTCAAATTCTACAGAAAATAAAAGGTTTGAAAATATTCCGATCGGAATTTCCTTCCACAAATGATCGGAATTTTTGGAACTTTTGAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28427</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>414657</contig_pos>
        <strand></strand>
        <context>caaataaggg[G/C]tttcagtggg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AATAGCAAATATGAAGTATGTTACCGGCCAATAAGATATACAAATAAGGG</left_flank>
        <right_flank>TTTCAGTGGGTTGTTACAATTTTCAAAAGTCTAGAACTCGGCGGGCAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTCAAAACGATCCTGTCAATGACCCAGTTGTACTCTGGTTGAACGGTGGTCCAGGATGCAGTTCTCTGGGAGGATTCTTTACGGAACTGGGACCACTCCATCCAAACGATGATGGAGGTCAGACTCTGTATGAAAATGTTTTTTCCTGGAATAAGGTAAGTGATATAGTGTTCAAATTGGCAAAATGATTCGGAGGGTACCAAACTTGTGGGGTCGTTGGGGTACAAAATACCAGAAAATGTTTGGATTTTGTACGCCTAAATCACTTTTCATCTGCTGTACCCTGGAATCGTTGCATTCTTCGAATTGTGTGTCGACTGTGAATTTGGCGTGGTTTGATATCATTTGATTGCCAAACGTACAAATTGTTTGCATTAAAAATTTGATTTATTGAATTAGAAACAATACAAATTGTTTTATCAGTTTAATGAAAAACAAACTAAACAAAATAGCAAATATGAAGTATGTTACCGGCCAATAAGATATACAAATAAGGGGTTTCAGTGGGTTGTTACAATTTTCAAAAGTCTAGAACTCGGCGGGCAATTATCGAATCATTTTGAAAGTTTTGAAAGATTTGAAAGTTTTGAAATAGACCTAGATTAAAAATTTTGCATTCATAGAATTTTTTGAAAGTTCCTAACTTTTTAGCTATTTACCGATTTCTGAAGGAAACCTGTTTCTTCACGTTCTCTTGAGCCAACAAGGGATGTCTTCCAGAAATAGGAAAATATCTGAACCACTAGAAATTTTCGAGAACTTCTGTTAATGCAAAGTTCTTAATGTAGGTATGTTTCACACCCGCCAAAATTATCAAGACTTTTGAAAATGGTCTCAACCAACTGAAAAACAAGTTTATCTTATTGACAGATACTGTAGTAGGTAGAGAAATAGAAAAAACGAAAATTATTGAATCCGCAAAGTCTCAGCATGGAAAAAATATACTGTAGTGGGTAAAAGGTGGATTTTTAAATATTACAGAAAGCCAACGTGATCTT</canonical>
            <polymorphic>ATCTCAAAACGATCCTGTCAATGACCCAGTTGTACTCTGGTTGAACGGTGGTCCAGGATGCAGTTCTCTGGGAGGATTCTTTACGGAACTGGGACCACTCCATCCAAACGATGATGGAGGTCAGACTCTGTATGAAAATGTTTTTTCCTGGAATAAGGTAAGTGATATAGTGTTCAAATTGGCAAAATGATTCGGAGGGTACCAAACTTGTGGGGTCGTTGGGGTACAAAATACCAGAAAATGTTTGGATTTTGTACGCCTAAATCACTTTTCATCTGCTGTACCCTGGAATCGTTGCATTCTTCGAATTGTGTGTCGACTGTGAATTTGGCGTGGTTTGATATCATTTGATTGCCAAACGTACAAATTGTTTGCATTAAAAATTTGATTTATTGAATTAGAAACAATACAAATTGTTTTATCAGTTTAATGAAAAACAAACTAAACAAAATAGCAAATATGAAGTATGTTACCGGCCAATAAGATATACAAATAAGGGSTTTCAGTGGGTTGTTACAATTTTCAAAAGTCTAGAACTCGGCGGGCAATTATCGAATCATTTTGAAAGTTTTGAAAGATTTGAAAGTTTTGAAATAGACCTAGATTAAAAATTTTGCATTCATAGAATTTTTTGAAAGTTCCTAACTTTTTAGCTATTTACCGATTTCTGAAGGAAACCTGTTTCTTCACGTTCTCTTGAGCCAACAAGGGATGTCTTCCAGAAATAGGAAAATATCTGAACCACTAGAAATTTTCGAGAACTTCTGTTAATGCAAAGTTCTTAATGTAGGTATGTTTCACACCCGCCAAAATTATCAAGACTTTTGAAAATGGTCTCAACCAACTGAAAAACAAGTTTATCTTATTGACAGATACTGTAGTAGGTAGAGAAATAGAAAAAACGAAAATTATTGAATCCGCAAAGTCTCAGCATGGAAAAAATATACTGTAGTGGGTAAAAGGTGGATTTTTAAATATTACAGAAAGCCAACGTGATCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACAAAATAGCAAATATGAAGTATG</pcr_primer_p1>
		<pcr_primer_p2>TTGCGGATTCAATAATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>480</pcr_amplicon_size>
		<canonical_amplicon>AAACAAAATAGCAAATATGAAGTATGTTACCGGCCAATAAGATATACAAATAAGGGGTTTCAGTGGGTTGTTACAATTTTCAAAAGTCTAGAACTCGGCGGGCAATTATCGAATCATTTTGAAAGTTTTGAAAGATTTGAAAGTTTTGAAATAGACCTAGATTAAAAATTTTGCATTCATAGAATTTTTTGAAAGTTCCTAACTTTTTAGCTATTTACCGATTTCTGAAGGAAACCTGTTTCTTCACGTTCTCTTGAGCCAACAAGGGATGTCTTCCAGAAATAGGAAAATATCTGAACCACTAGAAATTTTCGAGAACTTCTGTTAATGCAAAGTTCTTAATGTAGGTATGTTTCACACCCGCCAAAATTATCAAGACTTTTGAAAATGGTCTCAACCAACTGAAAAACAAGTTTATCTTATTGACAGATACTGTAGTAGGTAGAGAAATAGAAAAAACGAAAATTATTGAATCCGCAA</canonical_amplicon>
		<polymorphic_amplicon>AAACAAAATAGCAAATATGAAGTATGTTACCGGCCAATAAGATATACAAATAAGGGSTTTCAGTGGGTTGTTACAATTTTCAAAAGTCTAGAACTCGGCGGGCAATTATCGAATCATTTTGAAAGTTTTGAAAGATTTGAAAGTTTTGAAATAGACCTAGATTAAAAATTTTGCATTCATAGAATTTTTTGAAAGTTCCTAACTTTTTAGCTATTTACCGATTTCTGAAGGAAACCTGTTTCTTCACGTTCTCTTGAGCCAACAAGGGATGTCTTCCAGAAATAGGAAAATATCTGAACCACTAGAAATTTTCGAGAACTTCTGTTAATGCAAAGTTCTTAATGTAGGTATGTTTCACACCCGCCAAAATTATCAAGACTTTTGAAAATGGTCTCAACCAACTGAAAAACAAGTTTATCTTATTGACAGATACTGTAGTAGGTAGAGAAATAGAAAAAACGAAAATTATTGAATCCGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28428</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>414744</contig_pos>
        <strand></strand>
        <context>gatttgaaag[T/G]tktgaaatag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CTCGGCGGGCAATTATCGAATCATTTTGAAAGTTTTGAAAGATTTGAAAG</left_flank>
        <right_flank>TTTGAAATAGACCTAGATTAAAAATTTTGCATTCATAGAATTTTTTGAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGGGACCACTCCATCCAAACGATGATGGAGGTCAGACTCTGTATGAAAATGTTTTTTCCTGGAATAAGGTAAGTGATATAGTGTTCAAATTGGCAAAATGATTCGGAGGGTACCAAACTTGTGGGGTCGTTGGGGTACAAAATACCAGAAAATGTTTGGATTTTGTACGCCTAAATCACTTTTCATCTGCTGTACCCTGGAATCGTTGCATTCTTCGAATTGTGTGTCGACTGTGAATTTGGCGTGGTTTGATATCATTTGATTGCCAAACGTACAAATTGTTTGCATTAAAAATTTGATTTATTGAATTAGAAACAATACAAATTGTTTTATCAGTTTAATGAAAAACAAACTAAACAAAATAGCAAATATGAAGTATGTTACCGGCCAATAAGATATACAAATAAGGGGTTTCAGTGGGTTGTTACAATTTTCAAAAGTCTAGAACTCGGCGGGCAATTATCGAATCATTTTGAAAGTTTTGAAAGATTTGAAAGTTTTGAAATAGACCTAGATTAAAAATTTTGCATTCATAGAATTTTTTGAAAGTTCCTAACTTTTTAGCTATTTACCGATTTCTGAAGGAAACCTGTTTCTTCACGTTCTCTTGAGCCAACAAGGGATGTCTTCCAGAAATAGGAAAATATCTGAACCACTAGAAATTTTCGAGAACTTCTGTTAATGCAAAGTTCTTAATGTAGGTATGTTTCACACCCGCCAAAATTATCAAGACTTTTGAAAATGGTCTCAACCAACTGAAAAACAAGTTTATCTTATTGACAGATACTGTAGTAGGTAGAGAAATAGAAAAAACGAAAATTATTGAATCCGCAAAGTCTCAGCATGGAAAAAATATACTGTAGTGGGTAAAAGGTGGATTTTTAAATATTACAGAAAGCCAACGTGATCTTCCTCGAAGCCCCAGCTGCAGTGGGATTCTCTTACACCGAAGACCCAAACTACTACTGGAACGATGATACTGTAAGTAAATCATACTC</canonical>
            <polymorphic>ACTGGGACCACTCCATCCAAACGATGATGGAGGTCAGACTCTGTATGAAAATGTTTTTTCCTGGAATAAGGTAAGTGATATAGTGTTCAAATTGGCAAAATGATTCGGAGGGTACCAAACTTGTGGGGTCGTTGGGGTACAAAATACCAGAAAATGTTTGGATTTTGTACGCCTAAATCACTTTTCATCTGCTGTACCCTGGAATCGTTGCATTCTTCGAATTGTGTGTCGACTGTGAATTTGGCGTGGTTTGATATCATTTGATTGCCAAACGTACAAATTGTTTGCATTAAAAATTTGATTTATTGAATTAGAAACAATACAAATTGTTTTATCAGTTTAATGAAAAACAAACTAAACAAAATAGCAAATATGAAGTATGTTACCGGCCAATAAGATATACAAATAAGGGGTTTCAGTGGGTTGTTACAATTTTCAAAAGTCTAGAACTCGGCGGGCAATTATCGAATCATTTTGAAAGTTTTGAAAGATTTGAAAGKTTTGAAATAGACCTAGATTAAAAATTTTGCATTCATAGAATTTTTTGAAAGTTCCTAACTTTTTAGCTATTTACCGATTTCTGAAGGAAACCTGTTTCTTCACGTTCTCTTGAGCCAACAAGGGATGTCTTCCAGAAATAGGAAAATATCTGAACCACTAGAAATTTTCGAGAACTTCTGTTAATGCAAAGTTCTTAATGTAGGTATGTTTCACACCCGCCAAAATTATCAAGACTTTTGAAAATGGTCTCAACCAACTGAAAAACAAGTTTATCTTATTGACAGATACTGTAGTAGGTAGAGAAATAGAAAAAACGAAAATTATTGAATCCGCAAAGTCTCAGCATGGAAAAAATATACTGTAGTGGGTAAAAGGTGGATTTTTAAATATTACAGAAAGCCAACGTGATCTTCCTCGAAGCCCCAGCTGCAGTGGGATTCTCTTACACCGAAGACCCAAACTACTACTGGAACGATGATACTGTAAGTAAATCATACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACAAAATAGCAAATATGAAGTATG</pcr_primer_p1>
		<pcr_primer_p2>TTGCGGATTCAATAATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>480</pcr_amplicon_size>
		<canonical_amplicon>AAACAAAATAGCAAATATGAAGTATGTTACCGGCCAATAAGATATACAAATAAGGGGTTTCAGTGGGTTGTTACAATTTTCAAAAGTCTAGAACTCGGCGGGCAATTATCGAATCATTTTGAAAGTTTTGAAAGATTTGAAAGTTTTGAAATAGACCTAGATTAAAAATTTTGCATTCATAGAATTTTTTGAAAGTTCCTAACTTTTTAGCTATTTACCGATTTCTGAAGGAAACCTGTTTCTTCACGTTCTCTTGAGCCAACAAGGGATGTCTTCCAGAAATAGGAAAATATCTGAACCACTAGAAATTTTCGAGAACTTCTGTTAATGCAAAGTTCTTAATGTAGGTATGTTTCACACCCGCCAAAATTATCAAGACTTTTGAAAATGGTCTCAACCAACTGAAAAACAAGTTTATCTTATTGACAGATACTGTAGTAGGTAGAGAAATAGAAAAAACGAAAATTATTGAATCCGCAA</canonical_amplicon>
		<polymorphic_amplicon>AAACAAAATAGCAAATATGAAGTATGTTACCGGCCAATAAGATATACAAATAAGGGGTTTCAGTGGGTTGTTACAATTTTCAAAAGTCTAGAACTCGGCGGGCAATTATCGAATCATTTTGAAAGTTTTGAAAGATTTGAAAGKTTTGAAATAGACCTAGATTAAAAATTTTGCATTCATAGAATTTTTTGAAAGTTCCTAACTTTTTAGCTATTTACCGATTTCTGAAGGAAACCTGTTTCTTCACGTTCTCTTGAGCCAACAAGGGATGTCTTCCAGAAATAGGAAAATATCTGAACCACTAGAAATTTTCGAGAACTTCTGTTAATGCAAAGTTCTTAATGTAGGTATGTTTCACACCCGCCAAAATTATCAAGACTTTTGAAAATGGTCTCAACCAACTGAAAAACAAGTTTATCTTATTGACAGATACTGTAGTAGGTAGAGAAATAGAAAAAACGAAAATTATTGAATCCGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28429</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>414746</contig_pos>
        <strand></strand>
        <context>tttgaaagkt[T/G]tgaaatagac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CGGCGGGCAATTATCGAATCATTTTGAAAGTTTTGAAAGATTTGAAAGTT</left_flank>
        <right_flank>TGAAATAGACCTAGATTAAAAATTTTGCATTCATAGAATTTTTTGAAAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGACCACTCCATCCAAACGATGATGGAGGTCAGACTCTGTATGAAAATGTTTTTTCCTGGAATAAGGTAAGTGATATAGTGTTCAAATTGGCAAAATGATTCGGAGGGTACCAAACTTGTGGGGTCGTTGGGGTACAAAATACCAGAAAATGTTTGGATTTTGTACGCCTAAATCACTTTTCATCTGCTGTACCCTGGAATCGTTGCATTCTTCGAATTGTGTGTCGACTGTGAATTTGGCGTGGTTTGATATCATTTGATTGCCAAACGTACAAATTGTTTGCATTAAAAATTTGATTTATTGAATTAGAAACAATACAAATTGTTTTATCAGTTTAATGAAAAACAAACTAAACAAAATAGCAAATATGAAGTATGTTACCGGCCAATAAGATATACAAATAAGGGGTTTCAGTGGGTTGTTACAATTTTCAAAAGTCTAGAACTCGGCGGGCAATTATCGAATCATTTTGAAAGTTTTGAAAGATTTGAAAGTTTTGAAATAGACCTAGATTAAAAATTTTGCATTCATAGAATTTTTTGAAAGTTCCTAACTTTTTAGCTATTTACCGATTTCTGAAGGAAACCTGTTTCTTCACGTTCTCTTGAGCCAACAAGGGATGTCTTCCAGAAATAGGAAAATATCTGAACCACTAGAAATTTTCGAGAACTTCTGTTAATGCAAAGTTCTTAATGTAGGTATGTTTCACACCCGCCAAAATTATCAAGACTTTTGAAAATGGTCTCAACCAACTGAAAAACAAGTTTATCTTATTGACAGATACTGTAGTAGGTAGAGAAATAGAAAAAACGAAAATTATTGAATCCGCAAAGTCTCAGCATGGAAAAAATATACTGTAGTGGGTAAAAGGTGGATTTTTAAATATTACAGAAAGCCAACGTGATCTTCCTCGAAGCCCCAGCTGCAGTGGGATTCTCTTACACCGAAGACCCAAACTACTACTGGAACGATGATACTGTAAGTAAATCATACTCTG</canonical>
            <polymorphic>TGGGACCACTCCATCCAAACGATGATGGAGGTCAGACTCTGTATGAAAATGTTTTTTCCTGGAATAAGGTAAGTGATATAGTGTTCAAATTGGCAAAATGATTCGGAGGGTACCAAACTTGTGGGGTCGTTGGGGTACAAAATACCAGAAAATGTTTGGATTTTGTACGCCTAAATCACTTTTCATCTGCTGTACCCTGGAATCGTTGCATTCTTCGAATTGTGTGTCGACTGTGAATTTGGCGTGGTTTGATATCATTTGATTGCCAAACGTACAAATTGTTTGCATTAAAAATTTGATTTATTGAATTAGAAACAATACAAATTGTTTTATCAGTTTAATGAAAAACAAACTAAACAAAATAGCAAATATGAAGTATGTTACCGGCCAATAAGATATACAAATAAGGGGTTTCAGTGGGTTGTTACAATTTTCAAAAGTCTAGAACTCGGCGGGCAATTATCGAATCATTTTGAAAGTTTTGAAAGATTTGAAAGTTKTGAAATAGACCTAGATTAAAAATTTTGCATTCATAGAATTTTTTGAAAGTTCCTAACTTTTTAGCTATTTACCGATTTCTGAAGGAAACCTGTTTCTTCACGTTCTCTTGAGCCAACAAGGGATGTCTTCCAGAAATAGGAAAATATCTGAACCACTAGAAATTTTCGAGAACTTCTGTTAATGCAAAGTTCTTAATGTAGGTATGTTTCACACCCGCCAAAATTATCAAGACTTTTGAAAATGGTCTCAACCAACTGAAAAACAAGTTTATCTTATTGACAGATACTGTAGTAGGTAGAGAAATAGAAAAAACGAAAATTATTGAATCCGCAAAGTCTCAGCATGGAAAAAATATACTGTAGTGGGTAAAAGGTGGATTTTTAAATATTACAGAAAGCCAACGTGATCTTCCTCGAAGCCCCAGCTGCAGTGGGATTCTCTTACACCGAAGACCCAAACTACTACTGGAACGATGATACTGTAAGTAAATCATACTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACAAAATAGCAAATATGAAGTATG</pcr_primer_p1>
		<pcr_primer_p2>TTGCGGATTCAATAATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>480</pcr_amplicon_size>
		<canonical_amplicon>AAACAAAATAGCAAATATGAAGTATGTTACCGGCCAATAAGATATACAAATAAGGGGTTTCAGTGGGTTGTTACAATTTTCAAAAGTCTAGAACTCGGCGGGCAATTATCGAATCATTTTGAAAGTTTTGAAAGATTTGAAAGTTTTGAAATAGACCTAGATTAAAAATTTTGCATTCATAGAATTTTTTGAAAGTTCCTAACTTTTTAGCTATTTACCGATTTCTGAAGGAAACCTGTTTCTTCACGTTCTCTTGAGCCAACAAGGGATGTCTTCCAGAAATAGGAAAATATCTGAACCACTAGAAATTTTCGAGAACTTCTGTTAATGCAAAGTTCTTAATGTAGGTATGTTTCACACCCGCCAAAATTATCAAGACTTTTGAAAATGGTCTCAACCAACTGAAAAACAAGTTTATCTTATTGACAGATACTGTAGTAGGTAGAGAAATAGAAAAAACGAAAATTATTGAATCCGCAA</canonical_amplicon>
		<polymorphic_amplicon>AAACAAAATAGCAAATATGAAGTATGTTACCGGCCAATAAGATATACAAATAAGGGGTTTCAGTGGGTTGTTACAATTTTCAAAAGTCTAGAACTCGGCGGGCAATTATCGAATCATTTTGAAAGTTTTGAAAGATTTGAAAGTTKTGAAATAGACCTAGATTAAAAATTTTGCATTCATAGAATTTTTTGAAAGTTCCTAACTTTTTAGCTATTTACCGATTTCTGAAGGAAACCTGTTTCTTCACGTTCTCTTGAGCCAACAAGGGATGTCTTCCAGAAATAGGAAAATATCTGAACCACTAGAAATTTTCGAGAACTTCTGTTAATGCAAAGTTCTTAATGTAGGTATGTTTCACACCCGCCAAAATTATCAAGACTTTTGAAAATGGTCTCAACCAACTGAAAAACAAGTTTATCTTATTGACAGATACTGTAGTAGGTAGAGAAATAGAAAAAACGAAAATTATTGAATCCGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28430</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>414798</contig_pos>
        <strand></strand>
        <context>tttgaaagtt[C/T]ctaacttttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAATAGACCTAGATTAAAAATTTTGCATTCATAGAATTTTTTGAAAGTT</left_flank>
        <right_flank>CTAACTTTTTAGCTATTTACCGATTTCTGAAGGAAACCTGTTTCTTCACG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCCTGGAATAAGGTAAGTGATATAGTGTTCAAATTGGCAAAATGATTCGGAGGGTACCAAACTTGTGGGGTCGTTGGGGTACAAAATACCAGAAAATGTTTGGATTTTGTACGCCTAAATCACTTTTCATCTGCTGTACCCTGGAATCGTTGCATTCTTCGAATTGTGTGTCGACTGTGAATTTGGCGTGGTTTGATATCATTTGATTGCCAAACGTACAAATTGTTTGCATTAAAAATTTGATTTATTGAATTAGAAACAATACAAATTGTTTTATCAGTTTAATGAAAAACAAACTAAACAAAATAGCAAATATGAAGTATGTTACCGGCCAATAAGATATACAAATAAGGGGTTTCAGTGGGTTGTTACAATTTTCAAAAGTCTAGAACTCGGCGGGCAATTATCGAATCATTTTGAAAGTTTTGAAAGATTTGAAAGTTTTGAAATAGACCTAGATTAAAAATTTTGCATTCATAGAATTTTTTGAAAGTTCCTAACTTTTTAGCTATTTACCGATTTCTGAAGGAAACCTGTTTCTTCACGTTCTCTTGAGCCAACAAGGGATGTCTTCCAGAAATAGGAAAATATCTGAACCACTAGAAATTTTCGAGAACTTCTGTTAATGCAAAGTTCTTAATGTAGGTATGTTTCACACCCGCCAAAATTATCAAGACTTTTGAAAATGGTCTCAACCAACTGAAAAACAAGTTTATCTTATTGACAGATACTGTAGTAGGTAGAGAAATAGAAAAAACGAAAATTATTGAATCCGCAAAGTCTCAGCATGGAAAAAATATACTGTAGTGGGTAAAAGGTGGATTTTTAAATATTACAGAAAGCCAACGTGATCTTCCTCGAAGCCCCAGCTGCAGTGGGATTCTCTTACACCGAAGACCCAAACTACTACTGGAACGATGATACTGTAAGTAAATCATACTCTGGAAAAAAGACTGAGTTTTATCTATATATTTCAGACCGCCGAGAACAACGGAT</canonical>
            <polymorphic>TTTTTCCTGGAATAAGGTAAGTGATATAGTGTTCAAATTGGCAAAATGATTCGGAGGGTACCAAACTTGTGGGGTCGTTGGGGTACAAAATACCAGAAAATGTTTGGATTTTGTACGCCTAAATCACTTTTCATCTGCTGTACCCTGGAATCGTTGCATTCTTCGAATTGTGTGTCGACTGTGAATTTGGCGTGGTTTGATATCATTTGATTGCCAAACGTACAAATTGTTTGCATTAAAAATTTGATTTATTGAATTAGAAACAATACAAATTGTTTTATCAGTTTAATGAAAAACAAACTAAACAAAATAGCAAATATGAAGTATGTTACCGGCCAATAAGATATACAAATAAGGGGTTTCAGTGGGTTGTTACAATTTTCAAAAGTCTAGAACTCGGCGGGCAATTATCGAATCATTTTGAAAGTTTTGAAAGATTTGAAAGTTTTGAAATAGACCTAGATTAAAAATTTTGCATTCATAGAATTTTTTGAAAGTTYCTAACTTTTTAGCTATTTACCGATTTCTGAAGGAAACCTGTTTCTTCACGTTCTCTTGAGCCAACAAGGGATGTCTTCCAGAAATAGGAAAATATCTGAACCACTAGAAATTTTCGAGAACTTCTGTTAATGCAAAGTTCTTAATGTAGGTATGTTTCACACCCGCCAAAATTATCAAGACTTTTGAAAATGGTCTCAACCAACTGAAAAACAAGTTTATCTTATTGACAGATACTGTAGTAGGTAGAGAAATAGAAAAAACGAAAATTATTGAATCCGCAAAGTCTCAGCATGGAAAAAATATACTGTAGTGGGTAAAAGGTGGATTTTTAAATATTACAGAAAGCCAACGTGATCTTCCTCGAAGCCCCAGCTGCAGTGGGATTCTCTTACACCGAAGACCCAAACTACTACTGGAACGATGATACTGTAAGTAAATCATACTCTGGAAAAAAGACTGAGTTTTATCTATATATTTCAGACCGCCGAGAACAACGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACAAAATAGCAAATATGAAGTATG</pcr_primer_p1>
		<pcr_primer_p2>TTGCGGATTCAATAATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>480</pcr_amplicon_size>
		<canonical_amplicon>AAACAAAATAGCAAATATGAAGTATGTTACCGGCCAATAAGATATACAAATAAGGGGTTTCAGTGGGTTGTTACAATTTTCAAAAGTCTAGAACTCGGCGGGCAATTATCGAATCATTTTGAAAGTTTTGAAAGATTTGAAAGTTTTGAAATAGACCTAGATTAAAAATTTTGCATTCATAGAATTTTTTGAAAGTTCCTAACTTTTTAGCTATTTACCGATTTCTGAAGGAAACCTGTTTCTTCACGTTCTCTTGAGCCAACAAGGGATGTCTTCCAGAAATAGGAAAATATCTGAACCACTAGAAATTTTCGAGAACTTCTGTTAATGCAAAGTTCTTAATGTAGGTATGTTTCACACCCGCCAAAATTATCAAGACTTTTGAAAATGGTCTCAACCAACTGAAAAACAAGTTTATCTTATTGACAGATACTGTAGTAGGTAGAGAAATAGAAAAAACGAAAATTATTGAATCCGCAA</canonical_amplicon>
		<polymorphic_amplicon>AAACAAAATAGCAAATATGAAGTATGTTACCGGCCAATAAGATATACAAATAAGGGGTTTCAGTGGGTTGTTACAATTTTCAAAAGTCTAGAACTCGGCGGGCAATTATCGAATCATTTTGAAAGTTTTGAAAGATTTGAAAGTTTTGAAATAGACCTAGATTAAAAATTTTGCATTCATAGAATTTTTTGAAAGTTYCTAACTTTTTAGCTATTTACCGATTTCTGAAGGAAACCTGTTTCTTCACGTTCTCTTGAGCCAACAAGGGATGTCTTCCAGAAATAGGAAAATATCTGAACCACTAGAAATTTTCGAGAACTTCTGTTAATGCAAAGTTCTTAATGTAGGTATGTTTCACACCCGCCAAAATTATCAAGACTTTTGAAAATGGTCTCAACCAACTGAAAAACAAGTTTATCTTATTGACAGATACTGTAGTAGGTAGAGAAATAGAAAAAACGAAAATTATTGAATCCGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28431</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>415138</contig_pos>
        <strand>+</strand>
        <context>TTAAATATTA[C/T]AGAAAGCCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCATGGAAAAAATATACTGTAGTGGGTAAAAGGTGGATTTTTAAATATTA</left_flank>
        <right_flank>AGAAAGCCAACGTGATCTTCCTCGAAGCCCCAGCTGCAGTGGGATTCTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGATATACAAATAAGGGGTTTCAGTGGGTTGTTACAATTTTCAAAAGTCTAGAACTCGGCGGGCAATTATCGAATCATTTTGAAAGTTTTGAAAGATTTGAAAGTTTTGAAATAGACCTAGATTAAAAATTTTGCATTCATAGAATTTTTTGAAAGTTCCTAACTTTTTAGCTATTTACCGATTTCTGAAGGAAACCTGTTTCTTCACGTTCTCTTGAGCCAACAAGGGATGTCTTCCAGAAATAGGAAAATATCTGAACCACTAGAAATTTTCGAGAACTTCTGTTAATGCAAAGTTCTTAATGTAGGTATGTTTCACACCCGCCAAAATTATCAAGACTTTTGAAAATGGTCTCAACCAACTGAAAAACAAGTTTATCTTATTGACAGATACTGTAGTAGGTAGAGAAATAGAAAAAACGAAAATTATTGAATCCGCAAAGTCTCAGCATGGAAAAAATATACTGTAGTGGGTAAAAGGTGGATTTTTAAATATTACAGAAAGCCAACGTGATCTTCCTCGAAGCCCCAGCTGCAGTGGGATTCTCTTACACCGAAGACCCAAACTACTACTGGAACGATGATACTGTAAGTAAATCATACTCTGGAAAAAAGACTGAGTTTTATCTATATATTTCAGACCGCCGAGAACAACGGATACGCTATCAAGGCATTCTTCACAAAGAAATTCCCACAATACGCACAAAATCAATTCTTCATCACCGGAGAATCTTATGGTGGAGTTTATTGTCCAACATTGACCTTGAACTTGATCCAGCAAATTGACGCCGGCCTCTTGAATTTGAATTTTAAGGTTGGATTCTGTTTAATAGCGGCAGTCAAGTATCTAAATGTGAGACGTTTCAGGGAACTGCTGTAGGAAATGGTATTCTTAGCGAGTACCTCCAAACAAACTCTGAAATCGTTTTACAGTATGGAAGAGGATTCAATGGATTAGAGTGATTTTACTCGTATACTTTCAATCTAATAGTAATACAT</canonical>
            <polymorphic>AAGATATACAAATAAGGGGTTTCAGTGGGTTGTTACAATTTTCAAAAGTCTAGAACTCGGCGGGCAATTATCGAATCATTTTGAAAGTTTTGAAAGATTTGAAAGTTTTGAAATAGACCTAGATTAAAAATTTTGCATTCATAGAATTTTTTGAAAGTTCCTAACTTTTTAGCTATTTACCGATTTCTGAAGGAAACCTGTTTCTTCACGTTCTCTTGAGCCAACAAGGGATGTCTTCCAGAAATAGGAAAATATCTGAACCACTAGAAATTTTCGAGAACTTCTGTTAATGCAAAGTTCTTAATGTAGGTATGTTTCACACCCGCCAAAATTATCAAGACTTTTGAAAATGGTCTCAACCAACTGAAAAACAAGTTTATCTTATTGACAGATACTGTAGTAGGTAGAGAAATAGAAAAAACGAAAATTATTGAATCCGCAAAGTCTCAGCATGGAAAAAATATACTGTAGTGGGTAAAAGGTGGATTTTTAAATATTAYAGAAAGCCAACGTGATCTTCCTCGAAGCCCCAGCTGCAGTGGGATTCTCTTACACCGAAGACCCAAACTACTACTGGAACGATGATACTGTAAGTAAATCATACTCTGGAAAAAAGACTGAGTTTTATCTATATATTTCAGACCGCCGAGAACAACGGATACGCTATCAAGGCATTCTTCACAAAGAAATTCCCACAATACGCACAAAATCAATTCTTCATCACCGGAGAATCTTATGGTGGAGTTTATTGTCCAACATTGACCTTGAACTTGATCCAGCAAATTGACGCCGGCCTCTTGAATTTGAATTTTAAGGTTGGATTCTGTTTAATAGCGGCAGTCAAGTATCTAAATGTGAGACGTTTCAGGGAACTGCTGTAGGAAATGGTATTCTTAGCGAGTACCTCCAAACAAACTCTGAAATCGTTTTACAGTATGGAAGAGGATTCAATGGATTAGAGTGATTTTACTCGTATACTTTCAATCTAATAGTAATACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTATTGAATCCGCAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTGATAGCGTATCCGTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAATTATTGAATCCGCAAAGTCTCAGCATGGAAAAAATATACTGTAGTGGGTAAAAGGTGGATTTTTAAATATTACAGAAAGCCAACGTGATCTTCCTCGAAGCCCCAGCTGCAGTGGGATTCTCTTACACCGAAGACCCAAACTACTACTGGAACGATGATACTGTAAGTAAATCATACTCTGGAAAAAAGACTGAGTTTTATCTATATATTTCAGACCGCCGAGAACAACGGATACGCTATCAA</canonical_amplicon>
		<polymorphic_amplicon>AAATTATTGAATCCGCAAAGTCTCAGCATGGAAAAAATATACTGTAGTGGGTAAAAGGTGGATTTTTAAATATTAYAGAAAGCCAACGTGATCTTCCTCGAAGCCCCAGCTGCAGTGGGATTCTCTTACACCGAAGACCCAAACTACTACTGGAACGATGATACTGTAAGTAAATCATACTCTGGAAAAAAGACTGAGTTTTATCTATATATTTCAGACCGCCGAGAACAACGGATACGCTATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28432</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>485899</contig_pos>
        <strand></strand>
        <context>agagtttttt[A/G]aaagttccta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAGGGTGTGAAGTATCTAGATTGAAAATTTTGCAAGTACAGAGTTTTTT</left_flank>
        <right_flank>AAAGTTCCTAATTTTTCAGCTAATTGCCGATTTTTGAAAGACACCCTCCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAGTAGTTGTCAAGAGTGAGTTTTTGCATGACTGGCTCCTTGTTCTTCTCAACCCACTCCTCGAACTCTTCCTCGGTGTCGGCGGAAGTTGGGGCGAAAAGTGGATCCTCCTCGAATGGACGGCGCATTTGGACCTCTCCAACTCTCTTGAGTCCGACCTTGCGTGCCCACTGAAAATTTGTTATAATTATGAAGTAATTGCAAAAACCATTTGTGTGGTTCAATTGATCGTTAGGACAAAAATCAAAAACTACAGACTTGTTCCTGATCAGAAAATTCTTTTTTGATATTTCTAAATCATAAGTTGCTTTTTAACTTTTCAGACAATATACAGTGCCGGTCAGTAAGGTATATAAACATGTATTTTTCAGTAGATTTTGGGCCATTCGGACCATTTTCAGGTGCCTGGAGCTCGGCTGTTAAGTTTCTGTTCACTTTGAAATTTTTTTAGGGTGTGAAGTATCTAGATTGAAAATTTTGCAAGTACAGAGTTTTTTAAAAGTTCCTAATTTTTCAGCTAATTGCCGATTTTTGAAAGACACCCTCCTTCAGCCTGTTTTTTGCACTGAAAAGATGAAAAACAAGTGTTCTTCAGAAATCGGTAGATAGTTGAAAAACTAGGGACTTTCGAGAAATTCTGTAAATGCAAAATTTTCTGTCTACGTTTGTTTTACACGCAACAAAATTTCCAAAGTGATCGGAAATTTAACTGCTGAGCTCCAGACTCCTAAACTCAGTCAAAATGACCAGAACTCTACCGAAAAACCCATTTTCTGTTTATTTTATTGACCCGGTACTGTAGAAGAACTAATTGTGATACTGTTGGTTTTTAAATTTGTGATAAAAGATTTGAATTTTCCGGCTTTCAATTTTGCAGTTTTTCTTCAATACGGGATTCAGTGTTTCAGAGGTTGTCTGATATTATTATGAGATTATCAAGTTATATAAATCCATCCAATAATGGTAAGACACCCTCCGTTTTTGACTACATATATGAA</canonical>
            <polymorphic>TGAAGTAGTTGTCAAGAGTGAGTTTTTGCATGACTGGCTCCTTGTTCTTCTCAACCCACTCCTCGAACTCTTCCTCGGTGTCGGCGGAAGTTGGGGCGAAAAGTGGATCCTCCTCGAATGGACGGCGCATTTGGACCTCTCCAACTCTCTTGAGTCCGACCTTGCGTGCCCACTGAAAATTTGTTATAATTATGAAGTAATTGCAAAAACCATTTGTGTGGTTCAATTGATCGTTAGGACAAAAATCAAAAACTACAGACTTGTTCCTGATCAGAAAATTCTTTTTTGATATTTCTAAATCATAAGTTGCTTTTTAACTTTTCAGACAATATACAGTGCCGGTCAGTAAGGTATATAAACATGTATTTTTCAGTAGATTTTGGGCCATTCGGACCATTTTCAGGTGCCTGGAGCTCGGCTGTTAAGTTTCTGTTCACTTTGAAATTTTTTTAGGGTGTGAAGTATCTAGATTGAAAATTTTGCAAGTACAGAGTTTTTTRAAAGTTCCTAATTTTTCAGCTAATTGCCGATTTTTGAAAGACACCCTCCTTCAGCCTGTTTTTTGCACTGAAAAGATGAAAAACAAGTGTTCTTCAGAAATCGGTAGATAGTTGAAAAACTAGGGACTTTCGAGAAATTCTGTAAATGCAAAATTTTCTGTCTACGTTTGTTTTACACGCAACAAAATTTCCAAAGTGATCGGAAATTTAACTGCTGAGCTCCAGACTCCTAAACTCAGTCAAAATGACCAGAACTCTACCGAAAAACCCATTTTCTGTTTATTTTATTGACCCGGTACTGTAGAAGAACTAATTGTGATACTGTTGGTTTTTAAATTTGTGATAAAAGATTTGAATTTTCCGGCTTTCAATTTTGCAGTTTTTCTTCAATACGGGATTCAGTGTTTCAGAGGTTGTCTGATATTATTATGAGATTATCAAGTTATATAAATCCATCCAATAATGGTAAGACACCCTCCGTTTTTGACTACATATATGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 334 167</canonical_bands>
                <polymorphic_bands>833 167</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>314 210 168 124 108 76</canonical_bands>
                <polymorphic_bands>314 286 168 124 108</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCTTTTTAACTTTTCAGACAAT</pcr_primer_p1>
		<pcr_primer_p2>CCAACAGTATCACAATTAGTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>521</pcr_amplicon_size>
		<canonical_amplicon>TGCTTTTTAACTTTTCAGACAATATACAGTGCCGGTCAGTAAGGTATATAAACATGTATTTTTCAGTAGATTTTGGGCCATTCGGACCATTTTCAGGTGCCTGGAGCTCGGCTGTTAAGTTTCTGTTCACTTTGAAATTTTTTTAGGGTGTGAAGTATCTAGATTGAAAATTTTGCAAGTACAGAGTTTTTTAAAAGTTCCTAATTTTTCAGCTAATTGCCGATTTTTGAAAGACACCCTCCTTCAGCCTGTTTTTTGCACTGAAAAGATGAAAAACAAGTGTTCTTCAGAAATCGGTAGATAGTTGAAAAACTAGGGACTTTCGAGAAATTCTGTAAATGCAAAATTTTCTGTCTACGTTTGTTTTACACGCAACAAAATTTCCAAAGTGATCGGAAATTTAACTGCTGAGCTCCAGACTCCTAAACTCAGTCAAAATGACCAGAACTCTACCGAAAAACCCATTTTCTGTTTATTTTATTGACCCGGTACTGTAGAAGAACTAATTGTGATACTGTTGG</canonical_amplicon>
		<polymorphic_amplicon>TGCTTTTTAACTTTTCAGACAATATACAGTGCCGGTCAGTAAGGTATATAAACATGTATTTTTCAGTAGATTTTGGGCCATTCGGACCATTTTCAGGTGCCTGGAGCTCGGCTGTTAAGTTTCTGTTCACTTTGAAATTTTTTTAGGGTGTGAAGTATCTAGATTGAAAATTTTGCAAGTACAGAGTTTTTTRAAAGTTCCTAATTTTTCAGCTAATTGCCGATTTTTGAAAGACACCCTCCTTCAGCCTGTTTTTTGCACTGAAAAGATGAAAAACAAGTGTTCTTCAGAAATCGGTAGATAGTTGAAAAACTAGGGACTTTCGAGAAATTCTGTAAATGCAAAATTTTCTGTCTACGTTTGTTTTACACGCAACAAAATTTCCAAAGTGATCGGAAATTTAACTGCTGAGCTCCAGACTCCTAAACTCAGTCAAAATGACCAGAACTCTACCGAAAAACCCATTTTCTGTTTATTTTATTGACCCGGTACTGTAGAAGAACTAATTGTGATACTGTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28433</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>617387</contig_pos>
        <strand>+</strand>
        <context>TTAGAAATCC[A/T]TTTTTTTCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATATTGGAACTTGGATGTTAAAATCTGTGAATCTAGAATCTTAGAAATCC</left_flank>
        <right_flank>TTTTTTTCATTTTGGAAGTATTGAAGATTTCGAAAATCTCAAAATCTAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGAAAAACTTTGAATTAACACAATTTTTTTTTGAAATTCCCAGCTTTTCAGCTATGTGCCGATTTCTTAAGAAAACTTTTTTCAGGTTTCTTTACAAAAACAGGTAAAAAGGGGGCATTTCAGAAATGGACGAATAGCTGAAAAACTAGGATGTTGCGAAAATTTCTGTAAATGCAAAATTTGCAATATATACATATTCTACCCACTCCAAAGTTTTCATAATAATTGGAAACTTGACAGTCGAGCTCCAGGCTTCTAAATAATGATCATAATGGCCAAAACTCAACTAAAAACACATTTTTGTATCTCTAAATACACGAATCTTCTGAAAATTTTTAAATGCTAACAATCAAAAATCAAGCATTTCAAATTTTAAATTATGATTCTAAAAATCTGGAAATCTGGAAAATCTACAAAAATTCTGAAACATATAAGTTTAAAAAACTCATATTGGAACTTGGATGTTAAAATCTGTGAATCTAGAATCTTAGAAATCCTTTTTTTTCATTTTGGAAGTATTGAAGATTTCGAAAATCTCAAAATCTAGAAAATCAACAAAACACCCACACGTTTTAATGGAATTTCCATGTTTCTTAGTAACTATATGGCCAGATCAAGCAAATCGACTTTTTGCTAGCGTCCAGTATCTTTAAATTCCCTCCAAATGAAAATAATCGGACCCATAATTTGGTGGGTACCAAAATGCGGGGGTATGAAGTTCAAATAAATTTTTCTGAGTAGTTTACATCCCCGAACTGAGAATTTCGCACCTTCTAAATTGCTTGACTCTGAAATGACTCTTAAATGCTTTTACTCTCCGAATTATTCGCCAAAGAATCGTCCCAACGCTCTAAGGGAAACCCCTGAATAAGATTTGCAAAATTTATTATAAGAAAAAAATAGCGGAAATGATGAGTGCAAATTTTGACAGACTTCCTGGTCTTTTACACCTGCAAACTTCTTCCTGAAGAAAACATCATTGCAGACAGCATTAGCCA</canonical>
            <polymorphic>GAGGAAAAACTTTGAATTAACACAATTTTTTTTTGAAATTCCCAGCTTTTCAGCTATGTGCCGATTTCTTAAGAAAACTTTTTTCAGGTTTCTTTACAAAAACAGGTAAAAAGGGGGCATTTCAGAAATGGACGAATAGCTGAAAAACTAGGATGTTGCGAAAATTTCTGTAAATGCAAAATTTGCAATATATACATATTCTACCCACTCCAAAGTTTTCATAATAATTGGAAACTTGACAGTCGAGCTCCAGGCTTCTAAATAATGATCATAATGGCCAAAACTCAACTAAAAACACATTTTTGTATCTCTAAATACACGAATCTTCTGAAAATTTTTAAATGCTAACAATCAAAAATCAAGCATTTCAAATTTTAAATTATGATTCTAAAAATCTGGAAATCTGGAAAATCTACAAAAATTCTGAAACATATAAGTTTAAAAAACTCATATTGGAACTTGGATGTTAAAATCTGTGAATCTAGAATCTTAGAAATCCWTTTTTTTCATTTTGGAAGTATTGAAGATTTCGAAAATCTCAAAATCTAGAAAATCAACAAAACACCCACACGTTTTAATGGAATTTCCATGTTTCTTAGTAACTATATGGCCAGATCAAGCAAATCGACTTTTTGCTAGCGTCCAGTATCTTTAAATTCCCTCCAAATGAAAATAATCGGACCCATAATTTGGTGGGTACCAAAATGCGGGGGTATGAAGTTCAAATAAATTTTTCTGAGTAGTTTACATCCCCGAACTGAGAATTTCGCACCTTCTAAATTGCTTGACTCTGAAATGACTCTTAAATGCTTTTACTCTCCGAATTATTCGCCAAAGAATCGTCCCAACGCTCTAAGGGAAACCCCTGAATAAGATTTGCAAAATTTATTATAAGAAAAAAATAGCGGAAATGATGAGTGCAAATTTTGACAGACTTCCTGGTCTTTTACACCTGCAAACTTCTTCCTGAAGAAAACATCATTGCAGACAGCATTAGCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGCTAACAATCAAAAATCAAG</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCCATTAAAACGTGTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATGCTAACAATCAAAAATCAAGCATTTCAAATTTTAAATTATGATTCTAAAAATCTGGAAATCTGGAAAATCTACAAAAATTCTGAAACATATAAGTTTAAAAAACTCATATTGGAACTTGGATGTTAAAATCTGTGAATCTAGAATCTTAGAAATCCTTTTTTTTCATTTTGGAAGTATTGAAGATTTCGAAAATCTCAAAATCTAGAAAATCAACAAAACACCCACACGTTTTAATGGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>AATGCTAACAATCAAAAATCAAGCATTTCAAATTTTAAATTATGATTCTAAAAATCTGGAAATCTGGAAAATCTACAAAAATTCTGAAACATATAAGTTTAAAAAACTCATATTGGAACTTGGATGTTAAAATCTGTGAATCTAGAATCTTAGAAATCCWTTTTTTTCATTTTGGAAGTATTGAAGATTTCGAAAATCTCAAAATCTAGAAAATCAACAAAACACCCACACGTTTTAATGGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28434</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>699796</contig_pos>
        <strand></strand>
        <context>gcgcctttaa[T/A]taccgtacct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAA</left_flank>
        <right_flank>TACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAAAAGTGTGTGTGTTTTGTTTTGGGAAAAAGTTGTTTTTATCATCTAATTTCAAGCTAAATTGTAAATATTGAATTTGTAAATGTTTAAACAAATTTTTAAAAAAAAATGTTTTCCCTGAATTTTTCCAAAGTTGAGATCGAAGAAAAAATGCATTTTTGAAGCAAAAAAAAAAGTTTTTTCTCAAAAACAATTTTTTTTTAATTCTCAAAAAATTATCAAAAAAACATTTTTTTTTGAGAAATTTCGACCAACAAAAATTCTTGTCCGGGCTTTCCGGGCCTTCCGGGCCGGGCCGGGCCTTCAACGATTTTTGCAAGTATGACCAAAACTGAACCCGGAACCTTCCGCACCAAACTGCGCCGGAGGCGCGGCAAACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTG</canonical>
            <polymorphic>CAAAAAAGTGTGTGTGTTTTGTTTTGGGAAAAAGTTGTTTTTATCATCTAATTTCAAGCTAAATTGTAAATATTGAATTTGTAAATGTTTAAACAAATTTTTAAAAAAAAATGTTTTCCCTGAATTTTTCCAAAGTTGAGATCGAAGAAAAAATGCATTTTTGAAGCAAAAAAAAAAGTTTTTTCTCAAAAACAATTTTTTTTTAATTCTCAAAAAATTATCAAAAAAACATTTTTTTTTGAGAAATTTCGACCAACAAAAATTCTTGTCCGGGCTTTCCGGGCCTTCCGGGCCGGGCCGGGCCTTCAACGATTTTTGCAAGTATGACCAAAACTGAACCCGGAACCTTCCGCACCAAACTGCGCCGGAGGCGCGGCAAACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAAWTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>190 175 131 71 71 49 43 43 32 29 27 20 19 17 16 14 12 11 11 10 9</canonical_bands>
                <polymorphic_bands>190 175 131 90 71 49 43 43 32 29 27 20 17 16 14 12 11 11 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAGATGGCTGGTAAACTAAA</pcr_primer_p1>
		<pcr_primer_p2>AACTTTTGCGTTTTACCATTT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>AACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTT</canonical_amplicon>
		<polymorphic_amplicon>AACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAAWTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28435</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>699828</contig_pos>
        <strand></strand>
        <context>tattttgggc[C/T]ytatttggct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGC</left_flank>
        <right_flank>CTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTGTTTTTATCATCTAATTTCAAGCTAAATTGTAAATATTGAATTTGTAAATGTTTAAACAAATTTTTAAAAAAAAATGTTTTCCCTGAATTTTTCCAAAGTTGAGATCGAAGAAAAAATGCATTTTTGAAGCAAAAAAAAAAGTTTTTTCTCAAAAACAATTTTTTTTTAATTCTCAAAAAATTATCAAAAAAACATTTTTTTTTGAGAAATTTCGACCAACAAAAATTCTTGTCCGGGCTTTCCGGGCCTTCCGGGCCGGGCCGGGCCTTCAACGATTTTTGCAAGTATGACCAAAACTGAACCCGGAACCTTCCGCACCAAACTGCGCCGGAGGCGCGGCAAACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATA</canonical>
            <polymorphic>AGTTGTTTTTATCATCTAATTTCAAGCTAAATTGTAAATATTGAATTTGTAAATGTTTAAACAAATTTTTAAAAAAAAATGTTTTCCCTGAATTTTTCCAAAGTTGAGATCGAAGAAAAAATGCATTTTTGAAGCAAAAAAAAAAGTTTTTTCTCAAAAACAATTTTTTTTTAATTCTCAAAAAATTATCAAAAAAACATTTTTTTTTGAGAAATTTCGACCAACAAAAATTCTTGTCCGGGCTTTCCGGGCCTTCCGGGCCGGGCCGGGCCTTCAACGATTTTTGCAAGTATGACCAAAACTGAACCCGGAACCTTCCGCACCAAACTGCGCCGGAGGCGCGGCAAACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCYCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGGCCC</site>
                <isoschizomers>
                    <enzyme>ApaI</enzyme>
                    <enzyme>Bsp120I</enzyme>
                    <enzyme>PspOMI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>504 249 228 9 5 5</canonical_bands>
                <polymorphic_bands>732 249 9 5 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 312 186</canonical_bands>
                <polymorphic_bands>688 312</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>288 251 214 128 100 9 5 5</canonical_bands>
                <polymorphic_bands>314 288 251 128 9 5 5</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>216 215 175 100 85 73 43 26 19 10 9 9 5 5 5 5</canonical_bands>
                <polymorphic_bands>216 215 175 110 85 73 43 26 19 9 9 5 5 5 5</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAGATGGCTGGTAAACTAAA</pcr_primer_p1>
		<pcr_primer_p2>AACTTTTGCGTTTTACCATTT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>AACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTT</canonical_amplicon>
		<polymorphic_amplicon>AACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCYCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28436</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>699829</contig_pos>
        <strand></strand>
        <context>attttgggcy[C/T]tatttggctg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCC</left_flank>
        <right_flank>TATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTGTTTTTATCATCTAATTTCAAGCTAAATTGTAAATATTGAATTTGTAAATGTTTAAACAAATTTTTAAAAAAAAATGTTTTCCCTGAATTTTTCCAAAGTTGAGATCGAAGAAAAAATGCATTTTTGAAGCAAAAAAAAAAGTTTTTTCTCAAAAACAATTTTTTTTTAATTCTCAAAAAATTATCAAAAAAACATTTTTTTTTGAGAAATTTCGACCAACAAAAATTCTTGTCCGGGCTTTCCGGGCCTTCCGGGCCGGGCCGGGCCTTCAACGATTTTTGCAAGTATGACCAAAACTGAACCCGGAACCTTCCGCACCAAACTGCGCCGGAGGCGCGGCAAACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAA</canonical>
            <polymorphic>GTTGTTTTTATCATCTAATTTCAAGCTAAATTGTAAATATTGAATTTGTAAATGTTTAAACAAATTTTTAAAAAAAAATGTTTTCCCTGAATTTTTCCAAAGTTGAGATCGAAGAAAAAATGCATTTTTGAAGCAAAAAAAAAAGTTTTTTCTCAAAAACAATTTTTTTTTAATTCTCAAAAAATTATCAAAAAAACATTTTTTTTTGAGAAATTTCGACCAACAAAAATTCTTGTCCGGGCTTTCCGGGCCTTCCGGGCCGGGCCGGGCCTTCAACGATTTTTGCAAGTATGACCAAAACTGAACCCGGAACCTTCCGCACCAAACTGCGCCGGAGGCGCGGCAAACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCYTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGGCCC</site>
                <isoschizomers>
                    <enzyme>ApaI</enzyme>
                    <enzyme>Bsp120I</enzyme>
                    <enzyme>PspOMI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>503 311 186</canonical_bands>
                <polymorphic_bands>689 311</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAGATGGCTGGTAAACTAAA</pcr_primer_p1>
		<pcr_primer_p2>AACTTTTGCGTTTTACCATTT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>AACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTT</canonical_amplicon>
		<polymorphic_amplicon>AACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCYTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28437</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>699848</contig_pos>
        <strand></strand>
        <context>tgttttttct[G/A]ttttataaga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCT</left_flank>
        <right_flank>TTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAAGCTAAATTGTAAATATTGAATTTGTAAATGTTTAAACAAATTTTTAAAAAAAAATGTTTTCCCTGAATTTTTCCAAAGTTGAGATCGAAGAAAAAATGCATTTTTGAAGCAAAAAAAAAAGTTTTTTCTCAAAAACAATTTTTTTTTAATTCTCAAAAAATTATCAAAAAAACATTTTTTTTTGAGAAATTTCGACCAACAAAAATTCTTGTCCGGGCTTTCCGGGCCTTCCGGGCCGGGCCGGGCCTTCAACGATTTTTGCAAGTATGACCAAAACTGAACCCGGAACCTTCCGCACCAAACTGCGCCGGAGGCGCGGCAAACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGC</canonical>
            <polymorphic>TTCAAGCTAAATTGTAAATATTGAATTTGTAAATGTTTAAACAAATTTTTAAAAAAAAATGTTTTCCCTGAATTTTTCCAAAGTTGAGATCGAAGAAAAAATGCATTTTTGAAGCAAAAAAAAAAGTTTTTTCTCAAAAACAATTTTTTTTTAATTCTCAAAAAATTATCAAAAAAACATTTTTTTTTGAGAAATTTCGACCAACAAAAATTCTTGTCCGGGCTTTCCGGGCCTTCCGGGCCGGGCCGGGCCTTCAACGATTTTTGCAAGTATGACCAAAACTGAACCCGGAACCTTCCGCACCAAACTGCGCCGGAGGCGCGGCAAACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTRTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAGATGGCTGGTAAACTAAA</pcr_primer_p1>
		<pcr_primer_p2>AACTTTTGCGTTTTACCATTT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>AACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTT</canonical_amplicon>
		<polymorphic_amplicon>AACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTRTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28438</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>699869</contig_pos>
        <strand></strand>
        <context>aaaataaatt[A/G]aagattgata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATT</left_flank>
        <right_flank>AAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAATTTGTAAATGTTTAAACAAATTTTTAAAAAAAAATGTTTTCCCTGAATTTTTCCAAAGTTGAGATCGAAGAAAAAATGCATTTTTGAAGCAAAAAAAAAAGTTTTTTCTCAAAAACAATTTTTTTTTAATTCTCAAAAAATTATCAAAAAAACATTTTTTTTTGAGAAATTTCGACCAACAAAAATTCTTGTCCGGGCTTTCCGGGCCTTCCGGGCCGGGCCGGGCCTTCAACGATTTTTGCAAGTATGACCAAAACTGAACCCGGAACCTTCCGCACCAAACTGCGCCGGAGGCGCGGCAAACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGCAGTTACGTTTCCAACCATCAC</canonical>
            <polymorphic>TGAATTTGTAAATGTTTAAACAAATTTTTAAAAAAAAATGTTTTCCCTGAATTTTTCCAAAGTTGAGATCGAAGAAAAAATGCATTTTTGAAGCAAAAAAAAAAGTTTTTTCTCAAAAACAATTTTTTTTTAATTCTCAAAAAATTATCAAAAAAACATTTTTTTTTGAGAAATTTCGACCAACAAAAATTCTTGTCCGGGCTTTCCGGGCCTTCCGGGCCGGGCCGGGCCTTCAACGATTTTTGCAAGTATGACCAAAACTGAACCCGGAACCTTCCGCACCAAACTGCGCCGGAGGCGCGGCAAACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTRAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGCAGTTACGTTTCCAACCATCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>293 253 156 102 93 75 16 12</canonical_bands>
                <polymorphic_bands>293 253 168 156 102 16 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAGATGGCTGGTAAACTAAA</pcr_primer_p1>
		<pcr_primer_p2>AACTTTTGCGTTTTACCATTT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>AACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTT</canonical_amplicon>
		<polymorphic_amplicon>AACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTRAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28439</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>699981</contig_pos>
        <strand></strand>
        <context>gcaataattt[G/A]aaaaatacag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTT</left_flank>
        <right_flank>AAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAAACAATTTTTTTTTAATTCTCAAAAAATTATCAAAAAAACATTTTTTTTTGAGAAATTTCGACCAACAAAAATTCTTGTCCGGGCTTTCCGGGCCTTCCGGGCCGGGCCGGGCCTTCAACGATTTTTGCAAGTATGACCAAAACTGAACCCGGAACCTTCCGCACCAAACTGCGCCGGAGGCGCGGCAAACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGCAGTTACGTTTCCAACCATCACAAACTGATAATTCAAGAGTGCCGAGATCGTGCCACAACTATTTCAATGTATATGACAGTAGGTGAGAGTTTATATTGATTAAAATTCACTTTTCATTAAATTCAATAGGTTG</canonical>
            <polymorphic>TCAAAAACAATTTTTTTTTAATTCTCAAAAAATTATCAAAAAAACATTTTTTTTTGAGAAATTTCGACCAACAAAAATTCTTGTCCGGGCTTTCCGGGCCTTCCGGGCCGGGCCGGGCCTTCAACGATTTTTGCAAGTATGACCAAAACTGAACCCGGAACCTTCCGCACCAAACTGCGCCGGAGGCGCGGCAAACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTRAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGCAGTTACGTTTCCAACCATCACAAACTGATAATTCAAGAGTGCCGAGATCGTGCCACAACTATTTCAATGTATATGACAGTAGGTGAGAGTTTATATTGATTAAAATTCACTTTTCATTAAATTCAATAGGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAGATGGCTGGTAAACTAAA</pcr_primer_p1>
		<pcr_primer_p2>AACTTTTGCGTTTTACCATTT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>AACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTT</canonical_amplicon>
		<polymorphic_amplicon>AACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTRAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28440</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>700002</contig_pos>
        <strand></strand>
        <context>taaggttctc[T/G]mtgtgggagc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTC</left_flank>
        <right_flank>CTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTCAAAAAATTATCAAAAAAACATTTTTTTTTGAGAAATTTCGACCAACAAAAATTCTTGTCCGGGCTTTCCGGGCCTTCCGGGCCGGGCCGGGCCTTCAACGATTTTTGCAAGTATGACCAAAACTGAACCCGGAACCTTCCGCACCAAACTGCGCCGGAGGCGCGGCAAACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGCAGTTACGTTTCCAACCATCACAAACTGATAATTCAAGAGTGCCGAGATCGTGCCACAACTATTTCAATGTATATGACAGTAGGTGAGAGTTTATATTGATTAAAATTCACTTTTCATTAAATTCAATAGGTTGTGAACCACTAGCCGCTCCTCG</canonical>
            <polymorphic>TTCTCAAAAAATTATCAAAAAAACATTTTTTTTTGAGAAATTTCGACCAACAAAAATTCTTGTCCGGGCTTTCCGGGCCTTCCGGGCCGGGCCGGGCCTTCAACGATTTTTGCAAGTATGACCAAAACTGAACCCGGAACCTTCCGCACCAAACTGCGCCGGAGGCGCGGCAAACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCKCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGCAGTTACGTTTCCAACCATCACAAACTGATAATTCAAGAGTGCCGAGATCGTGCCACAACTATTTCAATGTATATGACAGTAGGTGAGAGTTTATATTGATTAAAATTCACTTTTCATTAAATTCAATAGGTTGTGAACCACTAGCCGCTCCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAGATGGCTGGTAAACTAAA</pcr_primer_p1>
		<pcr_primer_p2>AACTTTTGCGTTTTACCATTT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>AACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTT</canonical_amplicon>
		<polymorphic_amplicon>AACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCKCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28441</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>700003</contig_pos>
        <strand></strand>
        <context>aaggttctck[C/A]tgtgggagct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCT</left_flank>
        <right_flank>TGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCAAAAAATTATCAAAAAAACATTTTTTTTTGAGAAATTTCGACCAACAAAAATTCTTGTCCGGGCTTTCCGGGCCTTCCGGGCCGGGCCGGGCCTTCAACGATTTTTGCAAGTATGACCAAAACTGAACCCGGAACCTTCCGCACCAAACTGCGCCGGAGGCGCGGCAAACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGCAGTTACGTTTCCAACCATCACAAACTGATAATTCAAGAGTGCCGAGATCGTGCCACAACTATTTCAATGTATATGACAGTAGGTGAGAGTTTATATTGATTAAAATTCACTTTTCATTAAATTCAATAGGTTGTGAACCACTAGCCGCTCCTCGA</canonical>
            <polymorphic>TCTCAAAAAATTATCAAAAAAACATTTTTTTTTGAGAAATTTCGACCAACAAAAATTCTTGTCCGGGCTTTCCGGGCCTTCCGGGCCGGGCCGGGCCTTCAACGATTTTTGCAAGTATGACCAAAACTGAACCCGGAACCTTCCGCACCAAACTGCGCCGGAGGCGCGGCAAACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTMTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGCAGTTACGTTTCCAACCATCACAAACTGATAATTCAAGAGTGCCGAGATCGTGCCACAACTATTTCAATGTATATGACAGTAGGTGAGAGTTTATATTGATTAAAATTCACTTTTCATTAAATTCAATAGGTTGTGAACCACTAGCCGCTCCTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAGATGGCTGGTAAACTAAA</pcr_primer_p1>
		<pcr_primer_p2>AACTTTTGCGTTTTACCATTT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>AACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTT</canonical_amplicon>
		<polymorphic_amplicon>AACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTMTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28442</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>700020</contig_pos>
        <strand></strand>
        <context>agctaagctc[A/C]gcccaccgtt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTC</left_flank>
        <right_flank>GCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAACATTTTTTTTTGAGAAATTTCGACCAACAAAAATTCTTGTCCGGGCTTTCCGGGCCTTCCGGGCCGGGCCGGGCCTTCAACGATTTTTGCAAGTATGACCAAAACTGAACCCGGAACCTTCCGCACCAAACTGCGCCGGAGGCGCGGCAAACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGCAGTTACGTTTCCAACCATCACAAACTGATAATTCAAGAGTGCCGAGATCGTGCCACAACTATTTCAATGTATATGACAGTAGGTGAGAGTTTATATTGATTAAAATTCACTTTTCATTAAATTCAATAGGTTGTGAACCACTAGCCGCTCCTCGAAAACCAGTTGACAATGG</canonical>
            <polymorphic>AAAAACATTTTTTTTTGAGAAATTTCGACCAACAAAAATTCTTGTCCGGGCTTTCCGGGCCTTCCGGGCCGGGCCGGGCCTTCAACGATTTTTGCAAGTATGACCAAAACTGAACCCGGAACCTTCCGCACCAAACTGCGCCGGAGGCGCGGCAAACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCMGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGCAGTTACGTTTCCAACCATCACAAACTGATAATTCAAGAGTGCCGAGATCGTGCCACAACTATTTCAATGTATATGACAGTAGGTGAGAGTTTATATTGATTAAAATTCACTTTTCATTAAATTCAATAGGTTGTGAACCACTAGCCGCTCCTCGAAAACCAGTTGACAATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>492 264 239 5</canonical_bands>
                <polymorphic_bands>492 264 244</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>237 215 175 100 85 50 43 28 19 10 9 9 5 5 5 5</canonical_bands>
                <polymorphic_bands>237 215 175 100 85 50 43 28 24 10 9 9 5 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAGATGGCTGGTAAACTAAA</pcr_primer_p1>
		<pcr_primer_p2>AACTTTTGCGTTTTACCATTT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>AACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTT</canonical_amplicon>
		<polymorphic_amplicon>AACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCMGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28443</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>700140</contig_pos>
        <strand>+</strand>
        <context>GAATATTTTG[A/G]AAAACCGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTG</left_flank>
        <right_flank>AAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTTCCGCACCAAACTGCGCCGGAGGCGCGGCAAACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGCAGTTACGTTTCCAACCATCACAAACTGATAATTCAAGAGTGCCGAGATCGTGCCACAACTATTTCAATGTATATGACAGTAGGTGAGAGTTTATATTGATTAAAATTCACTTTTCATTAAATTCAATAGGTTGTGAACCACTAGCCGCTCCTCGAAAACCAGTTGACAATGGAGATTTTCCCACAAGTTGGAAAAAGGAATGCGCTGAAAAATTGAATAACTTTGTTGACATTATAAATGAGACGCAAACAGATGACGCATTCATTCTGACAAGGCAAAAATACGATTTTTA</canonical>
            <polymorphic>ACCTTCCGCACCAAACTGCGCCGGAGGCGCGGCAAACAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGRAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGCAGTTACGTTTCCAACCATCACAAACTGATAATTCAAGAGTGCCGAGATCGTGCCACAACTATTTCAATGTATATGACAGTAGGTGAGAGTTTATATTGATTAAAATTCACTTTTCATTAAATTCAATAGGTTGTGAACCACTAGCCGCTCCTCGAAAACCAGTTGACAATGGAGATTTTCCCACAAGTTGGAAAAAGGAATGCGCTGAAAAATTGAATAACTTTGTTGACATTATAAATGAGACGCAAACAGATGACGCATTCATTCTGACAAGGCAAAAATACGATTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGATGGCTGGTAAACTAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CTGTGGAGCGTTGTTATCAT</pcr_primer_p2>
		<pcr_amplicon_size>579</pcr_amplicon_size>
		<canonical_amplicon>CAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAG</canonical_amplicon>
		<polymorphic_amplicon>CAGATGGCTGGTAAACTAAAACTCTCGTCCGAAACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGRAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28444</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>700209</contig_pos>
        <strand>+</strand>
        <context>GACRATGCTG[A/G]ACAWTTGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTG</left_flank>
        <right_flank>ACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGA</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGCAGTTACGTTTCCAACCATCACAAACTGATAATTCAAGAGTGCCGAGATCGTGCCACAACTATTTCAATGTATATGACAGTAGGTGAGAGTTTATATTGATTAAAATTCACTTTTCATTAAATTCAATAGGTTGTGAACCACTAGCCGCTCCTCGAAAACCAGTTGACAATGGAGATTTTCCCACAAGTTGGAAAAAGGAATGCGCTGAAAAATTGAATAACTTTGTTGACATTATAAATGAGACGCAAACAGATGACGCATTCATTCTGACAAGGCAAAAATACGATTTTTACAAGACAAGGTTTTATCTATATATTCCAGATGGTTTGCTGTTGCGGAACCCTATGAAAATGACCTGATA</canonical>
            <polymorphic>ACCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGRACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGCAGTTACGTTTCCAACCATCACAAACTGATAATTCAAGAGTGCCGAGATCGTGCCACAACTATTTCAATGTATATGACAGTAGGTGAGAGTTTATATTGATTAAAATTCACTTTTCATTAAATTCAATAGGTTGTGAACCACTAGCCGCTCCTCGAAAACCAGTTGACAATGGAGATTTTCCCACAAGTTGGAAAAAGGAATGCGCTGAAAAATTGAATAACTTTGTTGACATTATAAATGAGACGCAAACAGATGACGCATTCATTCTGACAAGGCAAAAATACGATTTTTACAAGACAAGGTTTTATCTATATATTCCAGATGGTTTGCTGTTGCGGAACCCTATGAAAATGACCTGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTAAAACGCAAAAGTTTATCT</pcr_primer_p1>
		<pcr_primer_p2>CGAGAAAAGCAATTTTATATTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCG</canonical_amplicon>
		<polymorphic_amplicon>GGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGRACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28445</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>700213</contig_pos>
        <strand>+</strand>
        <context>ATGCTGRACA[A/T]TTGAATAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACA</left_flank>
        <right_flank>TTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGCAGTTACGTTTCCAACCATCACAAACTGATAATTCAAGAGTGCCGAGATCGTGCCACAACTATTTCAATGTATATGACAGTAGGTGAGAGTTTATATTGATTAAAATTCACTTTTCATTAAATTCAATAGGTTGTGAACCACTAGCCGCTCCTCGAAAACCAGTTGACAATGGAGATTTTCCCACAAGTTGGAAAAAGGAATGCGCTGAAAAATTGAATAACTTTGTTGACATTATAAATGAGACGCAAACAGATGACGCATTCATTCTGACAAGGCAAAAATACGATTTTTACAAGACAAGGTTTTATCTATATATTCCAGATGGTTTGCTGTTGCGGAACCCTATGAAAATGACCTGATAACTT</canonical>
            <polymorphic>ATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACAWTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGCAGTTACGTTTCCAACCATCACAAACTGATAATTCAAGAGTGCCGAGATCGTGCCACAACTATTTCAATGTATATGACAGTAGGTGAGAGTTTATATTGATTAAAATTCACTTTTCATTAAATTCAATAGGTTGTGAACCACTAGCCGCTCCTCGAAAACCAGTTGACAATGGAGATTTTCCCACAAGTTGGAAAAAGGAATGCGCTGAAAAATTGAATAACTTTGTTGACATTATAAATGAGACGCAAACAGATGACGCATTCATTCTGACAAGGCAAAAATACGATTTTTACAAGACAAGGTTTTATCTATATATTCCAGATGGTTTGCTGTTGCGGAACCCTATGAAAATGACCTGATAACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTAAAACGCAAAAGTTTATCT</pcr_primer_p1>
		<pcr_primer_p2>CGAGAAAAGCAATTTTATATTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCG</canonical_amplicon>
		<polymorphic_amplicon>GGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACAWTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28446</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>700227</contig_pos>
        <strand>+</strand>
        <context>AATAACTATT[A/G]GAATATCAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATT</left_flank>
        <right_flank>GAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGCAGTTACGTTTCCAACCATCACAAACTGATAATTCAAGAGTGCCGAGATCGTGCCACAACTATTTCAATGTATATGACAGTAGGTGAGAGTTTATATTGATTAAAATTCACTTTTCATTAAATTCAATAGGTTGTGAACCACTAGCCGCTCCTCGAAAACCAGTTGACAATGGAGATTTTCCCACAAGTTGGAAAAAGGAATGCGCTGAAAAATTGAATAACTTTGTTGACATTATAAATGAGACGCAAACAGATGACGCATTCATTCTGACAAGGCAAAAATACGATTTTTACAAGACAAGGTTTTATCTATATATTCCAGATGGTTTGCTGTTGCGGAACCCTATGAAAATGACCTGATAACTTGAGCAATGATACAA</canonical>
            <polymorphic>CGAAAATTTACTCAAAATCGCATTGTCGGTCGCACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTRGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGCAGTTACGTTTCCAACCATCACAAACTGATAATTCAAGAGTGCCGAGATCGTGCCACAACTATTTCAATGTATATGACAGTAGGTGAGAGTTTATATTGATTAAAATTCACTTTTCATTAAATTCAATAGGTTGTGAACCACTAGCCGCTCCTCGAAAACCAGTTGACAATGGAGATTTTCCCACAAGTTGGAAAAAGGAATGCGCTGAAAAATTGAATAACTTTGTTGACATTATAAATGAGACGCAAACAGATGACGCATTCATTCTGACAAGGCAAAAATACGATTTTTACAAGACAAGGTTTTATCTATATATTCCAGATGGTTTGCTGTTGCGGAACCCTATGAAAATGACCTGATAACTTGAGCAATGATACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTAAAACGCAAAAGTTTATCT</pcr_primer_p1>
		<pcr_primer_p2>CGAGAAAAGCAATTTTATATTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCG</canonical_amplicon>
		<polymorphic_amplicon>GGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTRGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28447</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>700260</contig_pos>
        <strand>+</strand>
        <context>CCACAGCTGA[A/G]AGAACCTGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGA</left_flank>
        <right_flank>AGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGCAGTTACGTTTCCAACCATCACAAACTGATAATTCAAGAGTGCCGAGATCGTGCCACAACTATTTCAATGTATATGACAGTAGGTGAGAGTTTATATTGATTAAAATTCACTTTTCATTAAATTCAATAGGTTGTGAACCACTAGCCGCTCCTCGAAAACCAGTTGACAATGGAGATTTTCCCACAAGTTGGAAAAAGGAATGCGCTGAAAAATTGAATAACTTTGTTGACATTATAAATGAGACGCAAACAGATGACGCATTCATTCTGACAAGGCAAAAATACGATTTTTACAAGACAAGGTTTTATCTATATATTCCAGATGGTTTGCTGTTGCGGAACCCTATGAAAATGACCTGATAACTTGAGCAATGATACAATCTACTTGGAAATGGAAAGCCAATTGAGGAAAA</canonical>
            <polymorphic>ACAGCGAAAAAAAAAATTGATTCATGCGCCTTTAATTACCGTACCTCGGACGTTTTTTATTTTGGGCCCTATTTGGCTGTTTTTTCTGTTTTATAAGAAAAATAAATTAAAGATTGATAAGAATTACACAAAATTAGACAGAAAAAAGTGAAAAAATGAGAGAAATTTGAAAAATTCGATAAATGTTGAGGTACTGTATTTAAGGCGCGTGCAATAATTTGAAAAATACAGTAAGGTTCTCTCTGTGGGAGCTAAGCTCAGCCCACCGTTGTTTTCTCGGCCGCAACGTGCATTGATTTCGGACAAGAGTAATATACAAAACAACAAGAGAAATGGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGARAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCGGAAGCAGTTACGTTTCCAACCATCACAAACTGATAATTCAAGAGTGCCGAGATCGTGCCACAACTATTTCAATGTATATGACAGTAGGTGAGAGTTTATATTGATTAAAATTCACTTTTCATTAAATTCAATAGGTTGTGAACCACTAGCCGCTCCTCGAAAACCAGTTGACAATGGAGATTTTCCCACAAGTTGGAAAAAGGAATGCGCTGAAAAATTGAATAACTTTGTTGACATTATAAATGAGACGCAAACAGATGACGCATTCATTCTGACAAGGCAAAAATACGATTTTTACAAGACAAGGTTTTATCTATATATTCCAGATGGTTTGCTGTTGCGGAACCCTATGAAAATGACCTGATAACTTGAGCAATGATACAATCTACTTGGAAATGGAAAGCCAATTGAGGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 252 239 5</canonical_bands>
                <polymorphic_bands>743 252 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTAAAACGCAAAAGTTTATCT</pcr_primer_p1>
		<pcr_primer_p2>CGAGAAAAGCAATTTTATATTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGAGAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCG</canonical_amplicon>
		<polymorphic_amplicon>GGTAAAACGCAAAAGTTTATCTTAACTGATCTACTGAATATTTTGAAAAACCGAAACCAAAAAAAAATCATAATTTCAAAATCTTTCTTCGGATGGAGTCTTCAGACAATGCTGGACATTTGAATAACTATTGGAATATCAATGATAACAACGCTCCACAGCTGARAGAACCTGGATGTATCCCAGTTCTAAAAAAGTCTTGGTGTGAATTCAAAGAGAACGGAACTGAATATAAAATTGCTTTTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28448</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>731324</contig_pos>
        <strand>-</strand>
        <context>TGAAAAATGG[C/T]CCACCTCTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACAAGAAACTTTCGGAAGAAAGTTACGTGTTCATACTTTGAAAAATGG</left_flank>
        <right_flank>CCACCTCTGTCGAAGTGGAATTTTTCAATAACGGAAATATAAAATTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGGACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAATCTACGAAAAATCTCCTGTCCCCTCACCTTTAAAGGAAAAAAAATAGTGACACAGTAAAGCCTGTGATAGAGCTCACTAACTTCTGCCTCTGAGTCAATTCATCTTGGTTTCTGTGGAAGATATAAAAAAGTTATCAACTGAAAAATTGTTTATTATGATATCAGCACTATTTTATCAGATGACACATTTTTGATATCTTTGGTAGGAGTAGAGATAATCGAGCTCAAAGTTGACAGTGTCAAGGCCTTTCTATTACAGGTTTTACGGTAGTTGTAGCTCGCTGAGAACATATCCAAACAAGAAACTTTCGGAAGAAAGTTACGTGTTCATACTTTGAAAAATGGGCCACCTCTGTCGAAGTGGAATTTTTCAATAACGGAAATATAAAATTTTTTCAAAATGAAAAATTATCGTAGTTTCTAATTCCAATTTTAATTTATTTTTCTTCAGGTGGATCCGACAATGGAGAAGGATCACGACGAACTCTACAGAGTGGCATGGGTCTCATCTATGTCGTCTATATCGTCATAAAATGGAGCGGGTAAGGATTTTAAGTTCTAGACAAATTAAAAAAAAAAGGTTGATTTGCAGGTTATTGAAGGAAATAGAGGAGAAATCAACAACATCCGAACGAGCCCTACGAACCCTGGGATGTTTGCCACNNNNNNNNNNTGGCCGGTTTTCGATCAAATGCGGTATCAAATAATCCTGGATCAAAATTATGGAACAATGGTGCTCATTGCTATATCAACCAAGTTCAGTTTCAGTCTCAGTTTGGAGCATTTCCAGAAATTTTTTTTGTTTTTTTTTCCATTCCCATTCATTTTGAGTTTTGAGTTATTTTT</canonical>
            <polymorphic>TTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGGACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAATCTACGAAAAATCTCCTGTCCCCTCACCTTTAAAGGAAAAAAAATAGTGACACAGTAAAGCCTGTGATAGAGCTCACTAACTTCTGCCTCTGAGTCAATTCATCTTGGTTTCTGTGGAAGATATAAAAAAGTTATCAACTGAAAAATTGTTTATTATGATATCAGCACTATTTTATCAGATGACACATTTTTGATATCTTTGGTAGGAGTAGAGATAATCGAGCTCAAAGTTGACAGTGTCAAGGCCTTTCTATTACAGGTTTTACGGTAGTTGTAGCTCGCTGAGAACATATCCAAACAAGAAACTTTCGGAAGAAAGTTACGTGTTCATACTTTGAAAAATGGYCCACCTCTGTCGAAGTGGAATTTTTCAATAACGGAAATATAAAATTTTTTCAAAATGAAAAATTATCGTAGTTTCTAATTCCAATTTTAATTTATTTTTCTTCAGGTGGATCCGACAATGGAGAAGGATCACGACGAACTCTACAGAGTGGCATGGGTCTCATCTATGTCGTCTATATCGTCATAAAATGGAGCGGGTAAGGATTTTAAGTTCTAGACAAATTAAAAAAAAAAGGTTGATTTGCAGGTTATTGAAGGAAATAGAGGAGAAATCAACAACATCCGAACGAGCCCTACGAACCCTGGGATGTTTGCCACNNNNNNNNNNTGGCCGGTTTTCGATCAAATGCGGTATCAAATAATCCTGGATCAAAATTATGGAACAATGGTGCTCATTGCTATATCAACCAAGTTCAGTTTCAGTCTCAGTTTGGAGCATTTCCAGAAATTTTTTTTGTTTTTTTTTCCATTCCCATTCATTTTGAGTTTTGAGTTATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>399 330 170 101</canonical_bands>
                <polymorphic_bands>431 399 170</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>290 170 151 70 69 58 57 40 32 29 22 12</canonical_bands>
                <polymorphic_bands>359 170 151 70 58 57 40 32 29 22 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAGAACATATCCAAACAAGAA</pcr_primer_p1>
		<pcr_primer_p2>ACTCTGTAGAGTTCGTCGTGAT</pcr_primer_p2>
		<pcr_amplicon_size>214</pcr_amplicon_size>
		<canonical_amplicon>CTGAGAACATATCCAAACAAGAAACTTTCGGAAGAAAGTTACGTGTTCATACTTTGAAAAATGGGCCACCTCTGTCGAAGTGGAATTTTTCAATAACGGAAATATAAAATTTTTTCAAAATGAAAAATTATCGTAGTTTCTAATTCCAATTTTAATTTATTTTTCTTCAGGTGGATCCGACAATGGAGAAGGATCACGACGAACTCTACAGAGT</canonical_amplicon>
		<polymorphic_amplicon>CTGAGAACATATCCAAACAAGAAACTTTCGGAAGAAAGTTACGTGTTCATACTTTGAAAAATGGYCCACCTCTGTCGAAGTGGAATTTTTCAATAACGGAAATATAAAATTTTTTCAAAATGAAAAATTATCGTAGTTTCTAATTCCAATTTTAATTTATTTTTCTTCAGGTGGATCCGACAATGGAGAAGGATCACGACGAACTCTACAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28449</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>731501</contig_pos>
        <strand>-</strand>
        <context>TGTCGTCTAT[C/T]TCGTCATAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATCACGACGAACTCTACAGAGTGGCATGGGTCTCATCTATGTCGTCTAT</left_flank>
        <right_flank>TCGTCATAAAATGGAGCGGGTAAGGATTTTAAGTTCTAGACAAATTAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACCTTTAAAGGAAAAAAAATAGTGACACAGTAAAGCCTGTGATAGAGCTCACTAACTTCTGCCTCTGAGTCAATTCATCTTGGTTTCTGTGGAAGATATAAAAAAGTTATCAACTGAAAAATTGTTTATTATGATATCAGCACTATTTTATCAGATGACACATTTTTGATATCTTTGGTAGGAGTAGAGATAATCGAGCTCAAAGTTGACAGTGTCAAGGCCTTTCTATTACAGGTTTTACGGTAGTTGTAGCTCGCTGAGAACATATCCAAACAAGAAACTTTCGGAAGAAAGTTACGTGTTCATACTTTGAAAAATGGGCCACCTCTGTCGAAGTGGAATTTTTCAATAACGGAAATATAAAATTTTTTCAAAATGAAAAATTATCGTAGTTTCTAATTCCAATTTTAATTTATTTTTCTTCAGGTGGATCCGACAATGGAGAAGGATCACGACGAACTCTACAGAGTGGCATGGGTCTCATCTATGTCGTCTATATCGTCATAAAATGGAGCGGGTAAGGATTTTAAGTTCTAGACAAATTAAAAAAAAAAGGTTGATTTGCAGGTTATTGAAGGAAATAGAGGAGAAATCAACAACATCCGAACGAGCCCTACGAACCCTGGGATGTTTGCCACNNNNNNNNNNTGGCCGGTTTTCGATCAAATGCGGTATCAAATAATCCTGGATCAAAATTATGGAACAATGGTGCTCATTGCTATATCAACCAAGTTCAGTTTCAGTCTCAGTTTGGAGCATTTCCAGAAATTTTTTTTGTTTTTTTTTCCATTCCCATTCATTTTGAGTTTTGAGTTATTTTTGACTAATTTTTAGTGGAAATTCGATGAGTTCCTAGGAAATCAAAGAGCAAGAAAAATCGAAGCTAGTATAAAAGTTCAAAAACGTAAGATTTATCACTTTTTTCAACGTGATCAAACGCAGTCGCAATGTTATTTGTTGTTATTTGGAACTCAATGCACTACGGAACAAAACAATTT</canonical>
            <polymorphic>TCACCTTTAAAGGAAAAAAAATAGTGACACAGTAAAGCCTGTGATAGAGCTCACTAACTTCTGCCTCTGAGTCAATTCATCTTGGTTTCTGTGGAAGATATAAAAAAGTTATCAACTGAAAAATTGTTTATTATGATATCAGCACTATTTTATCAGATGACACATTTTTGATATCTTTGGTAGGAGTAGAGATAATCGAGCTCAAAGTTGACAGTGTCAAGGCCTTTCTATTACAGGTTTTACGGTAGTTGTAGCTCGCTGAGAACATATCCAAACAAGAAACTTTCGGAAGAAAGTTACGTGTTCATACTTTGAAAAATGGGCCACCTCTGTCGAAGTGGAATTTTTCAATAACGGAAATATAAAATTTTTTCAAAATGAAAAATTATCGTAGTTTCTAATTCCAATTTTAATTTATTTTTCTTCAGGTGGATCCGACAATGGAGAAGGATCACGACGAACTCTACAGAGTGGCATGGGTCTCATCTATGTCGTCTATYTCGTCATAAAATGGAGCGGGTAAGGATTTTAAGTTCTAGACAAATTAAAAAAAAAAGGTTGATTTGCAGGTTATTGAAGGAAATAGAGGAGAAATCAACAACATCCGAACGAGCCCTACGAACCCTGGGATGTTTGCCACNNNNNNNNNNTGGCCGGTTTTCGATCAAATGCGGTATCAAATAATCCTGGATCAAAATTATGGAACAATGGTGCTCATTGCTATATCAACCAAGTTCAGTTTCAGTCTCAGTTTGGAGCATTTCCAGAAATTTTTTTTGTTTTTTTTTCCATTCCCATTCATTTTGAGTTTTGAGTTATTTTTGACTAATTTTTAGTGGAAATTCGATGAGTTCCTAGGAAATCAAAGAGCAAGAAAAATCGAAGCTAGTATAAAAGTTCAAAAACGTAAGATTTATCACTTTTTTCAACGTGATCAAACGCAGTCGCAATGTTATTTGTTGTTATTTGGAACTCAATGCACTACGGAACAAAACAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTTTTCAATAACGGAAATATAA</pcr_primer_p1>
		<pcr_primer_p2>TCCTCTATTTCCTTCAATAACCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATTTTTCAATAACGGAAATATAAAATTTTTTCAAAATGAAAAATTATCGTAGTTTCTAATTCCAATTTTAATTTATTTTTCTTCAGGTGGATCCGACAATGGAGAAGGATCACGACGAACTCTACAGAGTGGCATGGGTCTCATCTATGTCGTCTATATCGTCATAAAATGGAGCGGGTAAGGATTTTAAGTTCTAGACAAATTAAAAAAAAAAGGTTGATTTGCAGGTTATTGAAGGAAATAGAGGA</canonical_amplicon>
		<polymorphic_amplicon>GAATTTTTCAATAACGGAAATATAAAATTTTTTCAAAATGAAAAATTATCGTAGTTTCTAATTCCAATTTTAATTTATTTTTCTTCAGGTGGATCCGACAATGGAGAAGGATCACGACGAACTCTACAGAGTGGCATGGGTCTCATCTATGTCGTCTATYTCGTCATAAAATGGAGCGGGTAAGGATTTTAAGTTCTAGACAAATTAAAAAAAAAAGGTTGATTTGCAGGTTATTGAAGGAAATAGAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28450</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>731548</contig_pos>
        <strand>-</strand>
        <context>TAGACAAATT[A/T]AAAAAAAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATATCGTCATAAAATGGAGCGGGTAAGGATTTTAAGTTCTAGACAAATT</left_flank>
        <right_flank>AAAAAAAAAGGTTGATTTGCAGGTTATTGAAGGAAATAGAGGAGAAATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTCACTAACTTCTGCCTCTGAGTCAATTCATCTTGGTTTCTGTGGAAGATATAAAAAAGTTATCAACTGAAAAATTGTTTATTATGATATCAGCACTATTTTATCAGATGACACATTTTTGATATCTTTGGTAGGAGTAGAGATAATCGAGCTCAAAGTTGACAGTGTCAAGGCCTTTCTATTACAGGTTTTACGGTAGTTGTAGCTCGCTGAGAACATATCCAAACAAGAAACTTTCGGAAGAAAGTTACGTGTTCATACTTTGAAAAATGGGCCACCTCTGTCGAAGTGGAATTTTTCAATAACGGAAATATAAAATTTTTTCAAAATGAAAAATTATCGTAGTTTCTAATTCCAATTTTAATTTATTTTTCTTCAGGTGGATCCGACAATGGAGAAGGATCACGACGAACTCTACAGAGTGGCATGGGTCTCATCTATGTCGTCTATATCGTCATAAAATGGAGCGGGTAAGGATTTTAAGTTCTAGACAAATTAAAAAAAAAAGGTTGATTTGCAGGTTATTGAAGGAAATAGAGGAGAAATCAACAACATCCGAACGAGCCCTACGAACCCTGGGATGTTTGCCACNNNNNNNNNNTGGCCGGTTTTCGATCAAATGCGGTATCAAATAATCCTGGATCAAAATTATGGAACAATGGTGCTCATTGCTATATCAACCAAGTTCAGTTTCAGTCTCAGTTTGGAGCATTTCCAGAAATTTTTTTTGTTTTTTTTTCCATTCCCATTCATTTTGAGTTTTGAGTTATTTTTGACTAATTTTTAGTGGAAATTCGATGAGTTCCTAGGAAATCAAAGAGCAAGAAAAATCGAAGCTAGTATAAAAGTTCAAAAACGTAAGATTTATCACTTTTTTCAACGTGATCAAACGCAGTCGCAATGTTATTTGTTGTTATTTGGAACTCAATGCACTACGGAACAAAACAATTTTCCGGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATGCGGT</canonical>
            <polymorphic>AGCTCACTAACTTCTGCCTCTGAGTCAATTCATCTTGGTTTCTGTGGAAGATATAAAAAAGTTATCAACTGAAAAATTGTTTATTATGATATCAGCACTATTTTATCAGATGACACATTTTTGATATCTTTGGTAGGAGTAGAGATAATCGAGCTCAAAGTTGACAGTGTCAAGGCCTTTCTATTACAGGTTTTACGGTAGTTGTAGCTCGCTGAGAACATATCCAAACAAGAAACTTTCGGAAGAAAGTTACGTGTTCATACTTTGAAAAATGGGCCACCTCTGTCGAAGTGGAATTTTTCAATAACGGAAATATAAAATTTTTTCAAAATGAAAAATTATCGTAGTTTCTAATTCCAATTTTAATTTATTTTTCTTCAGGTGGATCCGACAATGGAGAAGGATCACGACGAACTCTACAGAGTGGCATGGGTCTCATCTATGTCGTCTATATCGTCATAAAATGGAGCGGGTAAGGATTTTAAGTTCTAGACAAATTWAAAAAAAAAGGTTGATTTGCAGGTTATTGAAGGAAATAGAGGAGAAATCAACAACATCCGAACGAGCCCTACGAACCCTGGGATGTTTGCCACNNNNNNNNNNTGGCCGGTTTTCGATCAAATGCGGTATCAAATAATCCTGGATCAAAATTATGGAACAATGGTGCTCATTGCTATATCAACCAAGTTCAGTTTCAGTCTCAGTTTGGAGCATTTCCAGAAATTTTTTTTGTTTTTTTTTCCATTCCCATTCATTTTGAGTTTTGAGTTATTTTTGACTAATTTTTAGTGGAAATTCGATGAGTTCCTAGGAAATCAAAGAGCAAGAAAAATCGAAGCTAGTATAAAAGTTCAAAAACGTAAGATTTATCACTTTTTTCAACGTGATCAAACGCAGTCGCAATGTTATTTGTTGTTATTTGGAACTCAATGCACTACGGAACAAAACAATTTTCCGGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATGCGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 363 119 16</canonical_bands>
                <polymorphic_bands>518 363 119</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGATCACGACGAACTCTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTGATCCAGGATTATTTGATAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGGATCACGACGAACTCTACAGAGTGGCATGGGTCTCATCTATGTCGTCTATATCGTCATAAAATGGAGCGGGTAAGGATTTTAAGTTCTAGACAAATTAAAAAAAAAAGGTTGATTTGCAGGTTATTGAAGGAAATAGAGGAGAAATCAACAACATCCGAACGAGCCCTACGAACCCTGGGATGTTTGCCACNNNNNNNNNNTGGCCGGTTTTCGATCAAATGCGGTATCAAATAATCCTGGATCAAA</canonical_amplicon>
		<polymorphic_amplicon>AAGGATCACGACGAACTCTACAGAGTGGCATGGGTCTCATCTATGTCGTCTATATCGTCATAAAATGGAGCGGGTAAGGATTTTAAGTTCTAGACAAATTWAAAAAAAAAGGTTGATTTGCAGGTTATTGAAGGAAATAGAGGAGAAATCAACAACATCCGAACGAGCCCTACGAACCCTGGGATGTTTGCCACNNNNNNNNNNTGGCCGGTTTTCGATCAAATGCGGTATCAAATAATCCTGGATCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28451</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>732002</contig_pos>
        <strand>-</strand>
        <context>AAAACAATTT[A/G]CRGGACAACC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTATTTGTTGTTATTTGGAACTCAATGCACTACGGAACAAAACAATTT</left_flank>
        <right_flank>CCGGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATGCGGTCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTCATAAAATGGAGCGGGTAAGGATTTTAAGTTCTAGACAAATTAAAAAAAAAAGGTTGATTTGCAGGTTATTGAAGGAAATAGAGGAGAAATCAACAACATCCGAACGAGCCCTACGAACCCTGGGATGTTTGCCACNNNNNNNNNNTGGCCGGTTTTCGATCAAATGCGGTATCAAATAATCCTGGATCAAAATTATGGAACAATGGTGCTCATTGCTATATCAACCAAGTTCAGTTTCAGTCTCAGTTTGGAGCATTTCCAGAAATTTTTTTTGTTTTTTTTTCCATTCCCATTCATTTTGAGTTTTGAGTTATTTTTGACTAATTTTTAGTGGAAATTCGATGAGTTCCTAGGAAATCAAAGAGCAAGAAAAATCGAAGCTAGTATAAAAGTTCAAAAACGTAAGATTTATCACTTTTTTCAACGTGATCAAACGCAGTCGCAATGTTATTTGTTGTTATTTGGAACTCAATGCACTACGGAACAAAACAATTTTCCGGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATGCGGTCTGAGCAGTTGGGAATACCATGAAGAGGACAAGCGAAACACTATGAAGTTTCTCGAAAAGGGGTGTCCACGCGAAGCCTACTGTCGTTAAAATACGTCCTGTAATCTTGGTCTCAGGCGTCTCACAGACCGTCCATCATGGGTGGTGATTTCTATCATTGGACGGCTTTTGTAATTTTGCTGCCGCCTTAACAATACCAATATTGACAAGAACGCAGCATTCAAGGCGGTGGTGGACGAGTTACAAAAGCATGCTTCCGAAATAGGATGGCACGGAGGCTTTCTAAAAAGCTGCTCGAACTCGAACTTCAACGATTTCCAGTTTGATGGGAGGCTCTATGAGCAAAAAAGAGGCCTCGCTATGAGAAGTCGTCTCGCACCAGTTCTTGCCGTCTTATACATGGATAGCATTGAAACCCCGAGTAAAGTCCACCCAACCATTCATTTACGGAGAT</canonical>
            <polymorphic>CGTCATAAAATGGAGCGGGTAAGGATTTTAAGTTCTAGACAAATTAAAAAAAAAAGGTTGATTTGCAGGTTATTGAAGGAAATAGAGGAGAAATCAACAACATCCGAACGAGCCCTACGAACCCTGGGATGTTTGCCACNNNNNNNNNNTGGCCGGTTTTCGATCAAATGCGGTATCAAATAATCCTGGATCAAAATTATGGAACAATGGTGCTCATTGCTATATCAACCAAGTTCAGTTTCAGTCTCAGTTTGGAGCATTTCCAGAAATTTTTTTTGTTTTTTTTTCCATTCCCATTCATTTTGAGTTTTGAGTTATTTTTGACTAATTTTTAGTGGAAATTCGATGAGTTCCTAGGAAATCAAAGAGCAAGAAAAATCGAAGCTAGTATAAAAGTTCAAAAACGTAAGATTTATCACTTTTTTCAACGTGATCAAACGCAGTCGCAATGTTATTTGTTGTTATTTGGAACTCAATGCACTACGGAACAAAACAATTTRCCGGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATGCGGTCTGAGCAGTTGGGAATACCATGAAGAGGACAAGCGAAACACTATGAAGTTTCTCGAAAAGGGGTGTCCACGCGAAGCCTACTGTCGTTAAAATACGTCCTGTAATCTTGGTCTCAGGCGTCTCACAGACCGTCCATCATGGGTGGTGATTTCTATCATTGGACGGCTTTTGTAATTTTGCTGCCGCCTTAACAATACCAATATTGACAAGAACGCAGCATTCAAGGCGGTGGTGGACGAGTTACAAAAGCATGCTTCCGAAATAGGATGGCACGGAGGCTTTCTAAAAAGCTGCTCGAACTCGAACTTCAACGATTTCCAGTTTGATGGGAGGCTCTATGAGCAAAAAAGAGGCCTCGCTATGAGAAGTCGTCTCGCACCAGTTCTTGCCGTCTTATACATGGATAGCATTGAAACCCCGAGTAAAGTCCACCCAACCATTCATTTACGGAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCCGGA</site>
                <isoschizomers>
                    <enzyme>AccIII</enzyme>
                    <enzyme>BseAI</enzyme>
                    <enzyme>BsiMI</enzyme>
                    <enzyme>Bsp13I</enzyme>
                    <enzyme>BspEI</enzyme>
                    <enzyme>BspMII</enzyme>
                    <enzyme>Kpn2I</enzyme>
                    <enzyme>MroI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>402 238 228 97 35</canonical_bands>
                <polymorphic_bands>402 335 228 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGTGGAAATTCGATGAGTTC</pcr_primer_p1>
		<pcr_primer_p2>GCTTGTCCTCTTCATGGTATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTAGTGGAAATTCGATGAGTTCCTAGGAAATCAAAGAGCAAGAAAAATCGAAGCTAGTATAAAAGTTCAAAAACGTAAGATTTATCACTTTTTTCAACGTGATCAAACGCAGTCGCAATGTTATTTGTTGTTATTTGGAACTCAATGCACTACGGAACAAAACAATTTTCCGGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATGCGGTCTGAGCAGTTGGGAATACCATGAAGAGGACAAGC</canonical_amplicon>
		<polymorphic_amplicon>TTAGTGGAAATTCGATGAGTTCCTAGGAAATCAAAGAGCAAGAAAAATCGAAGCTAGTATAAAAGTTCAAAAACGTAAGATTTATCACTTTTTTCAACGTGATCAAACGCAGTCGCAATGTTATTTGTTGTTATTTGGAACTCAATGCACTACGGAACAAAACAATTTRCCGGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATGCGGTCTGAGCAGTTGGGAATACCATGAAGAGGACAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28452</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>732004</contig_pos>
        <strand>-</strand>
        <context>AACAATTTRC[A/G]GGACAACCAC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATTTGTTGTTATTTGGAACTCAATGCACTACGGAACAAAACAATTTTC</left_flank>
        <right_flank>GGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATGCGGTCTGAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATAAAATGGAGCGGGTAAGGATTTTAAGTTCTAGACAAATTAAAAAAAAAAGGTTGATTTGCAGGTTATTGAAGGAAATAGAGGAGAAATCAACAACATCCGAACGAGCCCTACGAACCCTGGGATGTTTGCCACNNNNNNNNNNTGGCCGGTTTTCGATCAAATGCGGTATCAAATAATCCTGGATCAAAATTATGGAACAATGGTGCTCATTGCTATATCAACCAAGTTCAGTTTCAGTCTCAGTTTGGAGCATTTCCAGAAATTTTTTTTGTTTTTTTTTCCATTCCCATTCATTTTGAGTTTTGAGTTATTTTTGACTAATTTTTAGTGGAAATTCGATGAGTTCCTAGGAAATCAAAGAGCAAGAAAAATCGAAGCTAGTATAAAAGTTCAAAAACGTAAGATTTATCACTTTTTTCAACGTGATCAAACGCAGTCGCAATGTTATTTGTTGTTATTTGGAACTCAATGCACTACGGAACAAAACAATTTTCCGGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATGCGGTCTGAGCAGTTGGGAATACCATGAAGAGGACAAGCGAAACACTATGAAGTTTCTCGAAAAGGGGTGTCCACGCGAAGCCTACTGTCGTTAAAATACGTCCTGTAATCTTGGTCTCAGGCGTCTCACAGACCGTCCATCATGGGTGGTGATTTCTATCATTGGACGGCTTTTGTAATTTTGCTGCCGCCTTAACAATACCAATATTGACAAGAACGCAGCATTCAAGGCGGTGGTGGACGAGTTACAAAAGCATGCTTCCGAAATAGGATGGCACGGAGGCTTTCTAAAAAGCTGCTCGAACTCGAACTTCAACGATTTCCAGTTTGATGGGAGGCTCTATGAGCAAAAAAGAGGCCTCGCTATGAGAAGTCGTCTCGCACCAGTTCTTGCCGTCTTATACATGGATAGCATTGAAACCCCGAGTAAAGTCCACCCAACCATTCATTTACGGAGATAG</canonical>
            <polymorphic>TCATAAAATGGAGCGGGTAAGGATTTTAAGTTCTAGACAAATTAAAAAAAAAAGGTTGATTTGCAGGTTATTGAAGGAAATAGAGGAGAAATCAACAACATCCGAACGAGCCCTACGAACCCTGGGATGTTTGCCACNNNNNNNNNNTGGCCGGTTTTCGATCAAATGCGGTATCAAATAATCCTGGATCAAAATTATGGAACAATGGTGCTCATTGCTATATCAACCAAGTTCAGTTTCAGTCTCAGTTTGGAGCATTTCCAGAAATTTTTTTTGTTTTTTTTTCCATTCCCATTCATTTTGAGTTTTGAGTTATTTTTGACTAATTTTTAGTGGAAATTCGATGAGTTCCTAGGAAATCAAAGAGCAAGAAAAATCGAAGCTAGTATAAAAGTTCAAAAACGTAAGATTTATCACTTTTTTCAACGTGATCAAACGCAGTCGCAATGTTATTTGTTGTTATTTGGAACTCAATGCACTACGGAACAAAACAATTTTCRGGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATGCGGTCTGAGCAGTTGGGAATACCATGAAGAGGACAAGCGAAACACTATGAAGTTTCTCGAAAAGGGGTGTCCACGCGAAGCCTACTGTCGTTAAAATACGTCCTGTAATCTTGGTCTCAGGCGTCTCACAGACCGTCCATCATGGGTGGTGATTTCTATCATTGGACGGCTTTTGTAATTTTGCTGCCGCCTTAACAATACCAATATTGACAAGAACGCAGCATTCAAGGCGGTGGTGGACGAGTTACAAAAGCATGCTTCCGAAATAGGATGGCACGGAGGCTTTCTAAAAAGCTGCTCGAACTCGAACTTCAACGATTTCCAGTTTGATGGGAGGCTCTATGAGCAAAAAAGAGGCCTCGCTATGAGAAGTCGTCTCGCACCAGTTCTTGCCGTCTTATACATGGATAGCATTGAAACCCCGAGTAAAGTCCACCCAACCATTCATTTACGGAGATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCCGGA</site>
                <isoschizomers>
                    <enzyme>AccIII</enzyme>
                    <enzyme>BseAI</enzyme>
                    <enzyme>BsiMI</enzyme>
                    <enzyme>Bsp13I</enzyme>
                    <enzyme>BspEI</enzyme>
                    <enzyme>BspMII</enzyme>
                    <enzyme>Kpn2I</enzyme>
                    <enzyme>MroI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 348 151</canonical_bands>
                <polymorphic_bands>849 151</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGTGGAAATTCGATGAGTTC</pcr_primer_p1>
		<pcr_primer_p2>GCTTGTCCTCTTCATGGTATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTAGTGGAAATTCGATGAGTTCCTAGGAAATCAAAGAGCAAGAAAAATCGAAGCTAGTATAAAAGTTCAAAAACGTAAGATTTATCACTTTTTTCAACGTGATCAAACGCAGTCGCAATGTTATTTGTTGTTATTTGGAACTCAATGCACTACGGAACAAAACAATTTTCCGGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATGCGGTCTGAGCAGTTGGGAATACCATGAAGAGGACAAGC</canonical_amplicon>
		<polymorphic_amplicon>TTAGTGGAAATTCGATGAGTTCCTAGGAAATCAAAGAGCAAGAAAAATCGAAGCTAGTATAAAAGTTCAAAAACGTAAGATTTATCACTTTTTTCAACGTGATCAAACGCAGTCGCAATGTTATTTGTTGTTATTTGGAACTCAATGCACTACGGAACAAAACAATTTTCRGGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATGCGGTCTGAGCAGTTGGGAATACCATGAAGAGGACAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28453</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>732045</contig_pos>
        <strand>-</strand>
        <context>GATAGAAATG[A/G]GGTCTGAGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAATTTTCCGGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATG</left_flank>
        <right_flank>GGTCTGAGCAGTTGGGAATACCATGAAGAGGACAAGCGAAACACTATGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAAAAAAAAAAGGTTGATTTGCAGGTTATTGAAGGAAATAGAGGAGAAATCAACAACATCCGAACGAGCCCTACGAACCCTGGGATGTTTGCCACNNNNNNNNNNTGGCCGGTTTTCGATCAAATGCGGTATCAAATAATCCTGGATCAAAATTATGGAACAATGGTGCTCATTGCTATATCAACCAAGTTCAGTTTCAGTCTCAGTTTGGAGCATTTCCAGAAATTTTTTTTGTTTTTTTTTCCATTCCCATTCATTTTGAGTTTTGAGTTATTTTTGACTAATTTTTAGTGGAAATTCGATGAGTTCCTAGGAAATCAAAGAGCAAGAAAAATCGAAGCTAGTATAAAAGTTCAAAAACGTAAGATTTATCACTTTTTTCAACGTGATCAAACGCAGTCGCAATGTTATTTGTTGTTATTTGGAACTCAATGCACTACGGAACAAAACAATTTTCCGGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATGCGGTCTGAGCAGTTGGGAATACCATGAAGAGGACAAGCGAAACACTATGAAGTTTCTCGAAAAGGGGTGTCCACGCGAAGCCTACTGTCGTTAAAATACGTCCTGTAATCTTGGTCTCAGGCGTCTCACAGACCGTCCATCATGGGTGGTGATTTCTATCATTGGACGGCTTTTGTAATTTTGCTGCCGCCTTAACAATACCAATATTGACAAGAACGCAGCATTCAAGGCGGTGGTGGACGAGTTACAAAAGCATGCTTCCGAAATAGGATGGCACGGAGGCTTTCTAAAAAGCTGCTCGAACTCGAACTTCAACGATTTCCAGTTTGATGGGAGGCTCTATGAGCAAAAAAGAGGCCTCGCTATGAGAAGTCGTCTCGCACCAGTTCTTGCCGTCTTATACATGGATAGCATTGAAACCCCGAGTAAAGTCCACCCAACCATTCATTTACGGAGATAGATTGACGATTACATCGTGTTTGCCGAATCTCAAGATACACT</canonical>
            <polymorphic>TTAAAAAAAAAAGGTTGATTTGCAGGTTATTGAAGGAAATAGAGGAGAAATCAACAACATCCGAACGAGCCCTACGAACCCTGGGATGTTTGCCACNNNNNNNNNNTGGCCGGTTTTCGATCAAATGCGGTATCAAATAATCCTGGATCAAAATTATGGAACAATGGTGCTCATTGCTATATCAACCAAGTTCAGTTTCAGTCTCAGTTTGGAGCATTTCCAGAAATTTTTTTTGTTTTTTTTTCCATTCCCATTCATTTTGAGTTTTGAGTTATTTTTGACTAATTTTTAGTGGAAATTCGATGAGTTCCTAGGAAATCAAAGAGCAAGAAAAATCGAAGCTAGTATAAAAGTTCAAAAACGTAAGATTTATCACTTTTTTCAACGTGATCAAACGCAGTCGCAATGTTATTTGTTGTTATTTGGAACTCAATGCACTACGGAACAAAACAATTTTCCGGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATGRGGTCTGAGCAGTTGGGAATACCATGAAGAGGACAAGCGAAACACTATGAAGTTTCTCGAAAAGGGGTGTCCACGCGAAGCCTACTGTCGTTAAAATACGTCCTGTAATCTTGGTCTCAGGCGTCTCACAGACCGTCCATCATGGGTGGTGATTTCTATCATTGGACGGCTTTTGTAATTTTGCTGCCGCCTTAACAATACCAATATTGACAAGAACGCAGCATTCAAGGCGGTGGTGGACGAGTTACAAAAGCATGCTTCCGAAATAGGATGGCACGGAGGCTTTCTAAAAAGCTGCTCGAACTCGAACTTCAACGATTTCCAGTTTGATGGGAGGCTCTATGAGCAAAAAAGAGGCCTCGCTATGAGAAGTCGTCTCGCACCAGTTCTTGCCGTCTTATACATGGATAGCATTGAAACCCCGAGTAAAGTCCACCCAACCATTCATTTACGGAGATAGATTGACGATTACATCGTGTTTGCCGAATCTCAAGATACACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>505 221 158 116</canonical_bands>
                <polymorphic_bands>726 158 116</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTATTTGGAACTCAATGCACTA</pcr_primer_p1>
		<pcr_primer_p2>GTCCAATGATAGAAATCACCAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTATTTGGAACTCAATGCACTACGGAACAAAACAATTTTCCGGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATGCGGTCTGAGCAGTTGGGAATACCATGAAGAGGACAAGCGAAACACTATGAAGTTTCTCGAAAAGGGGTGTCCACGCGAAGCCTACTGTCGTTAAAATACGTCCTGTAATCTTGGTCTCAGGCGTCTCACAGACCGTCCATCATGGGTGGTGATTTCTATCATTGGAC</canonical_amplicon>
		<polymorphic_amplicon>GTTATTTGGAACTCAATGCACTACGGAACAAAACAATTTTCCGGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATGRGGTCTGAGCAGTTGGGAATACCATGAAGAGGACAAGCGAAACACTATGAAGTTTCTCGAAAAGGGGTGTCCACGCGAAGCCTACTGTCGTTAAAATACGTCCTGTAATCTTGGTCTCAGGCGTCTCACAGACCGTCCATCATGGGTGGTGATTTCTATCATTGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28454</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>732088</contig_pos>
        <strand>-</strand>
        <context>CAAGCGAAAC[C/T]CTATGYAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAATGCGGTCTGAGCAGTTGGGAATACCATGAAGAGGACAAGCGAAAC</left_flank>
        <right_flank>CTATGAAGTTTCTCGAAAAGGGGTGTCCACGCGAAGCCTACTGTCGTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGAAATCAACAACATCCGAACGAGCCCTACGAACCCTGGGATGTTTGCCACNNNNNNNNNNTGGCCGGTTTTCGATCAAATGCGGTATCAAATAATCCTGGATCAAAATTATGGAACAATGGTGCTCATTGCTATATCAACCAAGTTCAGTTTCAGTCTCAGTTTGGAGCATTTCCAGAAATTTTTTTTGTTTTTTTTTCCATTCCCATTCATTTTGAGTTTTGAGTTATTTTTGACTAATTTTTAGTGGAAATTCGATGAGTTCCTAGGAAATCAAAGAGCAAGAAAAATCGAAGCTAGTATAAAAGTTCAAAAACGTAAGATTTATCACTTTTTTCAACGTGATCAAACGCAGTCGCAATGTTATTTGTTGTTATTTGGAACTCAATGCACTACGGAACAAAACAATTTTCCGGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATGCGGTCTGAGCAGTTGGGAATACCATGAAGAGGACAAGCGAAACACTATGAAGTTTCTCGAAAAGGGGTGTCCACGCGAAGCCTACTGTCGTTAAAATACGTCCTGTAATCTTGGTCTCAGGCGTCTCACAGACCGTCCATCATGGGTGGTGATTTCTATCATTGGACGGCTTTTGTAATTTTGCTGCCGCCTTAACAATACCAATATTGACAAGAACGCAGCATTCAAGGCGGTGGTGGACGAGTTACAAAAGCATGCTTCCGAAATAGGATGGCACGGAGGCTTTCTAAAAAGCTGCTCGAACTCGAACTTCAACGATTTCCAGTTTGATGGGAGGCTCTATGAGCAAAAAAGAGGCCTCGCTATGAGAAGTCGTCTCGCACCAGTTCTTGCCGTCTTATACATGGATAGCATTGAAACCCCGAGTAAAGTCCACCCAACCATTCATTTACGGAGATAGATTGACGATTACATCGTGTTTGCCGAATCTCAAGATACACTCTACAATATTTGTATCTGTCTTAACATGTAGGCGGCACATATC</canonical>
            <polymorphic>GGAGAAATCAACAACATCCGAACGAGCCCTACGAACCCTGGGATGTTTGCCACNNNNNNNNNNTGGCCGGTTTTCGATCAAATGCGGTATCAAATAATCCTGGATCAAAATTATGGAACAATGGTGCTCATTGCTATATCAACCAAGTTCAGTTTCAGTCTCAGTTTGGAGCATTTCCAGAAATTTTTTTTGTTTTTTTTTCCATTCCCATTCATTTTGAGTTTTGAGTTATTTTTGACTAATTTTTAGTGGAAATTCGATGAGTTCCTAGGAAATCAAAGAGCAAGAAAAATCGAAGCTAGTATAAAAGTTCAAAAACGTAAGATTTATCACTTTTTTCAACGTGATCAAACGCAGTCGCAATGTTATTTGTTGTTATTTGGAACTCAATGCACTACGGAACAAAACAATTTTCCGGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATGCGGTCTGAGCAGTTGGGAATACCATGAAGAGGACAAGCGAAACYCTATGAAGTTTCTCGAAAAGGGGTGTCCACGCGAAGCCTACTGTCGTTAAAATACGTCCTGTAATCTTGGTCTCAGGCGTCTCACAGACCGTCCATCATGGGTGGTGATTTCTATCATTGGACGGCTTTTGTAATTTTGCTGCCGCCTTAACAATACCAATATTGACAAGAACGCAGCATTCAAGGCGGTGGTGGACGAGTTACAAAAGCATGCTTCCGAAATAGGATGGCACGGAGGCTTTCTAAAAAGCTGCTCGAACTCGAACTTCAACGATTTCCAGTTTGATGGGAGGCTCTATGAGCAAAAAAGAGGCCTCGCTATGAGAAGTCGTCTCGCACCAGTTCTTGCCGTCTTATACATGGATAGCATTGAAACCCCGAGTAAAGTCCACCCAACCATTCATTTACGGAGATAGATTGACGATTACATCGTGTTTGCCGAATCTCAAGATACACTCTACAATATTTGTATCTGTCTTAACATGTAGGCGGCACATATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>125 106 84 81 75 74 55 53 52 48 43 39 38 31 25 21 20 14 6 4 3 3</canonical_bands>
                <polymorphic_bands>125 106 100 84 81 74 55 53 52 48 43 39 38 31 21 20 14 6 4 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTATTTGGAACTCAATGCACTA</pcr_primer_p1>
		<pcr_primer_p2>GTCCAATGATAGAAATCACCAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTATTTGGAACTCAATGCACTACGGAACAAAACAATTTTCCGGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATGCGGTCTGAGCAGTTGGGAATACCATGAAGAGGACAAGCGAAACACTATGAAGTTTCTCGAAAAGGGGTGTCCACGCGAAGCCTACTGTCGTTAAAATACGTCCTGTAATCTTGGTCTCAGGCGTCTCACAGACCGTCCATCATGGGTGGTGATTTCTATCATTGGAC</canonical_amplicon>
		<polymorphic_amplicon>GTTATTTGGAACTCAATGCACTACGGAACAAAACAATTTTCCGGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATGCGGTCTGAGCAGTTGGGAATACCATGAAGAGGACAAGCGAAACYCTATGAAGTTTCTCGAAAAGGGGTGTCCACGCGAAGCCTACTGTCGTTAAAATACGTCCTGTAATCTTGGTCTCAGGCGTCTCACAGACCGTCCATCATGGGTGGTGATTTCTATCATTGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28455</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>732094</contig_pos>
        <strand>-</strand>
        <context>AAACYCTATG[C/T]AGTTTCTCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCGGTCTGAGCAGTTGGGAATACCATGAAGAGGACAAGCGAAACACTATG</left_flank>
        <right_flank>AGTTTCTCGAAAAGGGGTGTCCACGCGAAGCCTACTGTCGTTAAAATACG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAACAACATCCGAACGAGCCCTACGAACCCTGGGATGTTTGCCACNNNNNNNNNNTGGCCGGTTTTCGATCAAATGCGGTATCAAATAATCCTGGATCAAAATTATGGAACAATGGTGCTCATTGCTATATCAACCAAGTTCAGTTTCAGTCTCAGTTTGGAGCATTTCCAGAAATTTTTTTTGTTTTTTTTTCCATTCCCATTCATTTTGAGTTTTGAGTTATTTTTGACTAATTTTTAGTGGAAATTCGATGAGTTCCTAGGAAATCAAAGAGCAAGAAAAATCGAAGCTAGTATAAAAGTTCAAAAACGTAAGATTTATCACTTTTTTCAACGTGATCAAACGCAGTCGCAATGTTATTTGTTGTTATTTGGAACTCAATGCACTACGGAACAAAACAATTTTCCGGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATGCGGTCTGAGCAGTTGGGAATACCATGAAGAGGACAAGCGAAACACTATGAAGTTTCTCGAAAAGGGGTGTCCACGCGAAGCCTACTGTCGTTAAAATACGTCCTGTAATCTTGGTCTCAGGCGTCTCACAGACCGTCCATCATGGGTGGTGATTTCTATCATTGGACGGCTTTTGTAATTTTGCTGCCGCCTTAACAATACCAATATTGACAAGAACGCAGCATTCAAGGCGGTGGTGGACGAGTTACAAAAGCATGCTTCCGAAATAGGATGGCACGGAGGCTTTCTAAAAAGCTGCTCGAACTCGAACTTCAACGATTTCCAGTTTGATGGGAGGCTCTATGAGCAAAAAAGAGGCCTCGCTATGAGAAGTCGTCTCGCACCAGTTCTTGCCGTCTTATACATGGATAGCATTGAAACCCCGAGTAAAGTCCACCCAACCATTCATTTACGGAGATAGATTGACGATTACATCGTGTTTGCCGAATCTCAAGATACACTCTACAATATTTGTATCTGTCTTAACATGTAGGCGGCACATATCCGTCTG</canonical>
            <polymorphic>ATCAACAACATCCGAACGAGCCCTACGAACCCTGGGATGTTTGCCACNNNNNNNNNNTGGCCGGTTTTCGATCAAATGCGGTATCAAATAATCCTGGATCAAAATTATGGAACAATGGTGCTCATTGCTATATCAACCAAGTTCAGTTTCAGTCTCAGTTTGGAGCATTTCCAGAAATTTTTTTTGTTTTTTTTTCCATTCCCATTCATTTTGAGTTTTGAGTTATTTTTGACTAATTTTTAGTGGAAATTCGATGAGTTCCTAGGAAATCAAAGAGCAAGAAAAATCGAAGCTAGTATAAAAGTTCAAAAACGTAAGATTTATCACTTTTTTCAACGTGATCAAACGCAGTCGCAATGTTATTTGTTGTTATTTGGAACTCAATGCACTACGGAACAAAACAATTTTCCGGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATGCGGTCTGAGCAGTTGGGAATACCATGAAGAGGACAAGCGAAACACTATGYAGTTTCTCGAAAAGGGGTGTCCACGCGAAGCCTACTGTCGTTAAAATACGTCCTGTAATCTTGGTCTCAGGCGTCTCACAGACCGTCCATCATGGGTGGTGATTTCTATCATTGGACGGCTTTTGTAATTTTGCTGCCGCCTTAACAATACCAATATTGACAAGAACGCAGCATTCAAGGCGGTGGTGGACGAGTTACAAAAGCATGCTTCCGAAATAGGATGGCACGGAGGCTTTCTAAAAAGCTGCTCGAACTCGAACTTCAACGATTTCCAGTTTGATGGGAGGCTCTATGAGCAAAAAAGAGGCCTCGCTATGAGAAGTCGTCTCGCACCAGTTCTTGCCGTCTTATACATGGATAGCATTGAAACCCCGAGTAAAGTCCACCCAACCATTCATTTACGGAGATAGATTGACGATTACATCGTGTTTGCCGAATCTCAAGATACACTCTACAATATTTGTATCTGTCTTAACATGTAGGCGGCACATATCCGTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTATTTGGAACTCAATGCACTA</pcr_primer_p1>
		<pcr_primer_p2>GTCCAATGATAGAAATCACCAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTATTTGGAACTCAATGCACTACGGAACAAAACAATTTTCCGGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATGCGGTCTGAGCAGTTGGGAATACCATGAAGAGGACAAGCGAAACACTATGAAGTTTCTCGAAAAGGGGTGTCCACGCGAAGCCTACTGTCGTTAAAATACGTCCTGTAATCTTGGTCTCAGGCGTCTCACAGACCGTCCATCATGGGTGGTGATTTCTATCATTGGAC</canonical_amplicon>
		<polymorphic_amplicon>GTTATTTGGAACTCAATGCACTACGGAACAAAACAATTTTCCGGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATGCGGTCTGAGCAGTTGGGAATACCATGAAGAGGACAAGCGAAACACTATGYAGTTTCTCGAAAAGGGGTGTCCACGCGAAGCCTACTGTCGTTAAAATACGTCCTGTAATCTTGGTCTCAGGCGTCTCACAGACCGTCCATCATGGGTGGTGATTTCTATCATTGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28456</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>732134</contig_pos>
        <strand>-</strand>
        <context>GCCTACTGTC[C/T]TTAAAATACG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACACTATGAAGTTTCTCGAAAAGGGGTGTCCACGCGAAGCCTACTGTC</left_flank>
        <right_flank>TTAAAATACGTCCTGTAATCTTGGTCTCAGGCGTCTCACAGACCGTCCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCCACNNNNNNNNNNTGGCCGGTTTTCGATCAAATGCGGTATCAAATAATCCTGGATCAAAATTATGGAACAATGGTGCTCATTGCTATATCAACCAAGTTCAGTTTCAGTCTCAGTTTGGAGCATTTCCAGAAATTTTTTTTGTTTTTTTTTCCATTCCCATTCATTTTGAGTTTTGAGTTATTTTTGACTAATTTTTAGTGGAAATTCGATGAGTTCCTAGGAAATCAAAGAGCAAGAAAAATCGAAGCTAGTATAAAAGTTCAAAAACGTAAGATTTATCACTTTTTTCAACGTGATCAAACGCAGTCGCAATGTTATTTGTTGTTATTTGGAACTCAATGCACTACGGAACAAAACAATTTTCCGGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATGCGGTCTGAGCAGTTGGGAATACCATGAAGAGGACAAGCGAAACACTATGAAGTTTCTCGAAAAGGGGTGTCCACGCGAAGCCTACTGTCGTTAAAATACGTCCTGTAATCTTGGTCTCAGGCGTCTCACAGACCGTCCATCATGGGTGGTGATTTCTATCATTGGACGGCTTTTGTAATTTTGCTGCCGCCTTAACAATACCAATATTGACAAGAACGCAGCATTCAAGGCGGTGGTGGACGAGTTACAAAAGCATGCTTCCGAAATAGGATGGCACGGAGGCTTTCTAAAAAGCTGCTCGAACTCGAACTTCAACGATTTCCAGTTTGATGGGAGGCTCTATGAGCAAAAAAGAGGCCTCGCTATGAGAAGTCGTCTCGCACCAGTTCTTGCCGTCTTATACATGGATAGCATTGAAACCCCGAGTAAAGTCCACCCAACCATTCATTTACGGAGATAGATTGACGATTACATCGTGTTTGCCGAATCTCAAGATACACTCTACAATATTTGTATCTGTCTTAACATGTAGGCGGCACATATCCGTCTGACTCGAGAAAACCTAAAAGATAATGGTTACTTTTCCTTAA</canonical>
            <polymorphic>TTGCCACNNNNNNNNNNTGGCCGGTTTTCGATCAAATGCGGTATCAAATAATCCTGGATCAAAATTATGGAACAATGGTGCTCATTGCTATATCAACCAAGTTCAGTTTCAGTCTCAGTTTGGAGCATTTCCAGAAATTTTTTTTGTTTTTTTTTCCATTCCCATTCATTTTGAGTTTTGAGTTATTTTTGACTAATTTTTAGTGGAAATTCGATGAGTTCCTAGGAAATCAAAGAGCAAGAAAAATCGAAGCTAGTATAAAAGTTCAAAAACGTAAGATTTATCACTTTTTTCAACGTGATCAAACGCAGTCGCAATGTTATTTGTTGTTATTTGGAACTCAATGCACTACGGAACAAAACAATTTTCCGGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATGCGGTCTGAGCAGTTGGGAATACCATGAAGAGGACAAGCGAAACACTATGAAGTTTCTCGAAAAGGGGTGTCCACGCGAAGCCTACTGTCYTTAAAATACGTCCTGTAATCTTGGTCTCAGGCGTCTCACAGACCGTCCATCATGGGTGGTGATTTCTATCATTGGACGGCTTTTGTAATTTTGCTGCCGCCTTAACAATACCAATATTGACAAGAACGCAGCATTCAAGGCGGTGGTGGACGAGTTACAAAAGCATGCTTCCGAAATAGGATGGCACGGAGGCTTTCTAAAAAGCTGCTCGAACTCGAACTTCAACGATTTCCAGTTTGATGGGAGGCTCTATGAGCAAAAAAGAGGCCTCGCTATGAGAAGTCGTCTCGCACCAGTTCTTGCCGTCTTATACATGGATAGCATTGAAACCCCGAGTAAAGTCCACCCAACCATTCATTTACGGAGATAGATTGACGATTACATCGTGTTTGCCGAATCTCAAGATACACTCTACAATATTTGTATCTGTCTTAACATGTAGGCGGCACATATCCGTCTGACTCGAGAAAACCTAAAAGATAATGGTTACTTTTCCTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTATTTGGAACTCAATGCACTA</pcr_primer_p1>
		<pcr_primer_p2>GTCCAATGATAGAAATCACCAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTATTTGGAACTCAATGCACTACGGAACAAAACAATTTTCCGGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATGCGGTCTGAGCAGTTGGGAATACCATGAAGAGGACAAGCGAAACACTATGAAGTTTCTCGAAAAGGGGTGTCCACGCGAAGCCTACTGTCGTTAAAATACGTCCTGTAATCTTGGTCTCAGGCGTCTCACAGACCGTCCATCATGGGTGGTGATTTCTATCATTGGAC</canonical_amplicon>
		<polymorphic_amplicon>GTTATTTGGAACTCAATGCACTACGGAACAAAACAATTTTCCGGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATGCGGTCTGAGCAGTTGGGAATACCATGAAGAGGACAAGCGAAACACTATGAAGTTTCTCGAAAAGGGGTGTCCACGCGAAGCCTACTGTCYTTAAAATACGTCCTGTAATCTTGGTCTCAGGCGTCTCACAGACCGTCCATCATGGGTGGTGATTTCTATCATTGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28457</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>732156</contig_pos>
        <strand>-</strand>
        <context>CCTGTAATCT[A/G]GGTCTCAGGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGGGGTGTCCACGCGAAGCCTACTGTCGTTAAAATACGTCCTGTAATCT</left_flank>
        <right_flank>GGTCTCAGGCGTCTCACAGACCGTCCATCATGGGTGGTGATTTCTATCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTTTCGATCAAATGCGGTATCAAATAATCCTGGATCAAAATTATGGAACAATGGTGCTCATTGCTATATCAACCAAGTTCAGTTTCAGTCTCAGTTTGGAGCATTTCCAGAAATTTTTTTTGTTTTTTTTTCCATTCCCATTCATTTTGAGTTTTGAGTTATTTTTGACTAATTTTTAGTGGAAATTCGATGAGTTCCTAGGAAATCAAAGAGCAAGAAAAATCGAAGCTAGTATAAAAGTTCAAAAACGTAAGATTTATCACTTTTTTCAACGTGATCAAACGCAGTCGCAATGTTATTTGTTGTTATTTGGAACTCAATGCACTACGGAACAAAACAATTTTCCGGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATGCGGTCTGAGCAGTTGGGAATACCATGAAGAGGACAAGCGAAACACTATGAAGTTTCTCGAAAAGGGGTGTCCACGCGAAGCCTACTGTCGTTAAAATACGTCCTGTAATCTTGGTCTCAGGCGTCTCACAGACCGTCCATCATGGGTGGTGATTTCTATCATTGGACGGCTTTTGTAATTTTGCTGCCGCCTTAACAATACCAATATTGACAAGAACGCAGCATTCAAGGCGGTGGTGGACGAGTTACAAAAGCATGCTTCCGAAATAGGATGGCACGGAGGCTTTCTAAAAAGCTGCTCGAACTCGAACTTCAACGATTTCCAGTTTGATGGGAGGCTCTATGAGCAAAAAAGAGGCCTCGCTATGAGAAGTCGTCTCGCACCAGTTCTTGCCGTCTTATACATGGATAGCATTGAAACCCCGAGTAAAGTCCACCCAACCATTCATTTACGGAGATAGATTGACGATTACATCGTGTTTGCCGAATCTCAAGATACACTCTACAATATTTGTATCTGTCTTAACATGTAGGCGGCACATATCCGTCTGACTCGAGAAAACCTAAAAGATAATGGTTACTTTTCCTTAACTATCCATTTTCGTTCAAAAAC</canonical>
            <polymorphic>GGTTTTCGATCAAATGCGGTATCAAATAATCCTGGATCAAAATTATGGAACAATGGTGCTCATTGCTATATCAACCAAGTTCAGTTTCAGTCTCAGTTTGGAGCATTTCCAGAAATTTTTTTTGTTTTTTTTTCCATTCCCATTCATTTTGAGTTTTGAGTTATTTTTGACTAATTTTTAGTGGAAATTCGATGAGTTCCTAGGAAATCAAAGAGCAAGAAAAATCGAAGCTAGTATAAAAGTTCAAAAACGTAAGATTTATCACTTTTTTCAACGTGATCAAACGCAGTCGCAATGTTATTTGTTGTTATTTGGAACTCAATGCACTACGGAACAAAACAATTTTCCGGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATGCGGTCTGAGCAGTTGGGAATACCATGAAGAGGACAAGCGAAACACTATGAAGTTTCTCGAAAAGGGGTGTCCACGCGAAGCCTACTGTCGTTAAAATACGTCCTGTAATCTRGGTCTCAGGCGTCTCACAGACCGTCCATCATGGGTGGTGATTTCTATCATTGGACGGCTTTTGTAATTTTGCTGCCGCCTTAACAATACCAATATTGACAAGAACGCAGCATTCAAGGCGGTGGTGGACGAGTTACAAAAGCATGCTTCCGAAATAGGATGGCACGGAGGCTTTCTAAAAAGCTGCTCGAACTCGAACTTCAACGATTTCCAGTTTGATGGGAGGCTCTATGAGCAAAAAAGAGGCCTCGCTATGAGAAGTCGTCTCGCACCAGTTCTTGCCGTCTTATACATGGATAGCATTGAAACCCCGAGTAAAGTCCACCCAACCATTCATTTACGGAGATAGATTGACGATTACATCGTGTTTGCCGAATCTCAAGATACACTCTACAATATTTGTATCTGTCTTAACATGTAGGCGGCACATATCCGTCTGACTCGAGAAAACCTAAAAGATAATGGTTACTTTTCCTTAACTATCCATTTTCGTTCAAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTATTTGGAACTCAATGCACTA</pcr_primer_p1>
		<pcr_primer_p2>GTCCAATGATAGAAATCACCAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTATTTGGAACTCAATGCACTACGGAACAAAACAATTTTCCGGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATGCGGTCTGAGCAGTTGGGAATACCATGAAGAGGACAAGCGAAACACTATGAAGTTTCTCGAAAAGGGGTGTCCACGCGAAGCCTACTGTCGTTAAAATACGTCCTGTAATCTTGGTCTCAGGCGTCTCACAGACCGTCCATCATGGGTGGTGATTTCTATCATTGGAC</canonical_amplicon>
		<polymorphic_amplicon>GTTATTTGGAACTCAATGCACTACGGAACAAAACAATTTTCCGGACAACCACGGTAAATGAAACCTAGAGATGATAGAAATGCGGTCTGAGCAGTTGGGAATACCATGAAGAGGACAAGCGAAACACTATGAAGTTTCTCGAAAAGGGGTGTCCACGCGAAGCCTACTGTCGTTAAAATACGTCCTGTAATCTRGGTCTCAGGCGTCTCACAGACCGTCCATCATGGGTGGTGATTTCTATCATTGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28458</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>733984</contig_pos>
        <strand>+</strand>
        <context>ACTTTTATAC[C/T]AGCTTCGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGATCACGTTGAAAAAAGTGATAAATCTTACGTTTTTGAACTTTTATAC</left_flank>
        <right_flank>AGCTTCGATTTTTCTTGCTCTTTGATTTCCTAGGAACTCATCGAATTTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACGATGGAAGTGTTCTTCGAAAAAAATCATATTCGAATTGCCCAGGCCGTAGGATGCTTTCCTCATTACAGGTTCTTGGAACAGTCGGAAGACACAAATTGAAAATACTGACGATTTCGGCTGGATTCTCTGATCATATCCAGCCCAGCTAGGCGGCAGCAAAATTACAAAAGCCGTCCAATGATAGAAATCACCACCCATGATGGACGGTCTGTGAGACGCCTGAGACCAAGATTACAGGACGTATTTTAACGACAGTAGGCTTCGCGTGGACACCCCTTTTCGAGAAACTTCATAGTGTTTCGCTTGTCCTCTTCATGGTATTCCCAACTGCTCAGACCGCATTTCTATCATCTCTAGGTTTCATTTACCGTGGTTGTCCGGAAAATTGTTTTGTTCCGTAGTGCATTGAGTTCCAAATAACAACAAATAACATTGCGACTGCGTTTGATCACGTTGAAAAAAGTGATAAATCTTACGTTTTTGAACTTTTATACTAGCTTCGATTTTTCTTGCTCTTTGATTTCCTAGGAACTCATCGAATTTCCACTAAAAATTAGTCAAAAATAACTCAAAACTCAAAATGAATGGGAATGGAAAAAAAAACAAAAAAAATTTCTGGAAATGCTCCAAACTGAGACTGAAACTGAACTTGGTTGATATAGCATGAGCACCATTGTTCCATAATTTTGATCCAGGATTATTTGATACCGCATTTGATCGAAAACCGGCCAAAAAAAAAAACGTTTTGAAACTCAAAAATAGCTCAACTGGTGTGACAATTTTTGGGCATAGGTTTTTTCCACATTCTGAATCAACGTGTACAGAATTTTTCATTTTTTGGTTTTTCAGAACACTCATTGGGGGCGGGGACTATCTCTATGACCCGGACTGTAGGGGGATAGGGGCAGAGAAGACAAAACAAGCTTAACAAAAATAACAATAAAAAACTGACTACGTGATAATCTCACTTCTGGTTGACGTTCGTTTGAAGCTGT</canonical>
            <polymorphic>TGACGATGGAAGTGTTCTTCGAAAAAAATCATATTCGAATTGCCCAGGCCGTAGGATGCTTTCCTCATTACAGGTTCTTGGAACAGTCGGAAGACACAAATTGAAAATACTGACGATTTCGGCTGGATTCTCTGATCATATCCAGCCCAGCTAGGCGGCAGCAAAATTACAAAAGCCGTCCAATGATAGAAATCACCACCCATGATGGACGGTCTGTGAGACGCCTGAGACCAAGATTACAGGACGTATTTTAACGACAGTAGGCTTCGCGTGGACACCCCTTTTCGAGAAACTTCATAGTGTTTCGCTTGTCCTCTTCATGGTATTCCCAACTGCTCAGACCGCATTTCTATCATCTCTAGGTTTCATTTACCGTGGTTGTCCGGAAAATTGTTTTGTTCCGTAGTGCATTGAGTTCCAAATAACAACAAATAACATTGCGACTGCGTTTGATCACGTTGAAAAAAGTGATAAATCTTACGTTTTTGAACTTTTATACYAGCTTCGATTTTTCTTGCTCTTTGATTTCCTAGGAACTCATCGAATTTCCACTAAAAATTAGTCAAAAATAACTCAAAACTCAAAATGAATGGGAATGGAAAAAAAAACAAAAAAAATTTCTGGAAATGCTCCAAACTGAGACTGAAACTGAACTTGGTTGATATAGCATGAGCACCATTGTTCCATAATTTTGATCCAGGATTATTTGATACCGCATTTGATCGAAAACCGGCCAAAAAAAAAAACGTTTTGAAACTCAAAAATAGCTCAACTGGTGTGACAATTTTTGGGCATAGGTTTTTTCCACATTCTGAATCAACGTGTACAGAATTTTTCATTTTTTGGTTTTTCAGAACACTCATTGGGGGCGGGGACTATCTCTATGACCCGGACTGTAGGGGGATAGGGGCAGAGAAGACAAAACAAGCTTAACAAAAATAACAATAAAAAACTGACTACGTGATAATCTCACTTCTGGTTGACGTTCGTTTGAAGCTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>470 208 151 140 31</canonical_bands>
                <polymorphic_bands>470 208 171 151</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGAGTTCCAAATAACAACAAA</pcr_primer_p1>
		<pcr_primer_p2>CAAGTTCAGTTTCAGTCTCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTGAGTTCCAAATAACAACAAATAACATTGCGACTGCGTTTGATCACGTTGAAAAAAGTGATAAATCTTACGTTTTTGAACTTTTATACTAGCTTCGATTTTTCTTGCTCTTTGATTTCCTAGGAACTCATCGAATTTCCACTAAAAATTAGTCAAAAATAACTCAAAACTCAAAATGAATGGGAATGGAAAAAAAAACAAAAAAAATTTCTGGAAATGCTCCAAACTGAGACTGAAACTGAACTTG</canonical_amplicon>
		<polymorphic_amplicon>ATTGAGTTCCAAATAACAACAAATAACATTGCGACTGCGTTTGATCACGTTGAAAAAAGTGATAAATCTTACGTTTTTGAACTTTTATACYAGCTTCGATTTTTCTTGCTCTTTGATTTCCTAGGAACTCATCGAATTTCCACTAAAAATTAGTCAAAAATAACTCAAAACTCAAAATGAATGGGAATGGAAAAAAAAACAAAAAAAATTTCTGGAAATGCTCCAAACTGAGACTGAAACTGAACTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28459</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>737797</contig_pos>
        <strand>+</strand>
        <context>CAAAAATTCT[C/T]AAGTCGCGGR</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCT</left_flank>
        <right_flank>AAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGCTCCTATTCGCCGGAAGTTGATAAACATAGACCTGAAATTTTTAATTCATGATTATTGAAAAAAAAAATCAGAATACTTACAAACTCATTTTCAACCGCAGCTGCGAGTTGGTCCTTGTTTCTGTCCTCTTCCGTTTTCCTATAAGATGATTTGATTGAGCTGGCTGCTTCAGAGATTTCCCGTGCTTGGTCGTGATGGTGGCAGTGGTGAGGAATGGCAATGGATCGGCGGGGTTTGTGGGGTCGCTGGCATCTCCTCCAGTCTCCTTCTCCTTGTCTTTTCGTGTGGTTTTGCTGATCTTTGGAAAATGCGCTGTAAAATTGTATATGTTTATCGTGCTATTTATAAAAAATCTATTTAAAAAAAAAAGAATCTGTGTTATTTGGGAAAAAAATGGAAAAACTAACAGTTTGTCTCATGAAACTCTTTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCA</canonical>
            <polymorphic>CAGCTCCTATTCGCCGGAAGTTGATAAACATAGACCTGAAATTTTTAATTCATGATTATTGAAAAAAAAAATCAGAATACTTACAAACTCATTTTCAACCGCAGCTGCGAGTTGGTCCTTGTTTCTGTCCTCTTCCGTTTTCCTATAAGATGATTTGATTGAGCTGGCTGCTTCAGAGATTTCCCGTGCTTGGTCGTGATGGTGGCAGTGGTGAGGAATGGCAATGGATCGGCGGGGTTTGTGGGGTCGCTGGCATCTCCTCCAGTCTCCTTCTCCTTGTCTTTTCGTGTGGTTTTGCTGATCTTTGGAAAATGCGCTGTAAAATTGTATATGTTTATCGTGCTATTTATAAAAAATCTATTTAAAAAAAAAAGAATCTGTGTTATTTGGGAAAAAAATGGAAAAACTAACAGTTTGTCTCATGAAACTCTTTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTYAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTTAAG</site>
                <isoschizomers>
                    <enzyme>AflII</enzyme>
                    <enzyme>BfrI</enzyme>
                    <enzyme>BspTI</enzyme>
                    <enzyme>Bst98I</enzyme>
                    <enzyme>MspCI</enzyme>
                    <enzyme>Vha464I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>427 317 74 70 45 43 24</canonical_bands>
                <polymorphic_bands>451 317 74 70 45 43</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTGTCTCATGAAACTCTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTCCCCCTCTTTTCTCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTGTCTCATGAAACTCTTTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTGTCTCATGAAACTCTTTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTYAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28460</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>737807</contig_pos>
        <strand>+</strand>
        <context>YAAGTCGCGG[A/G]AAAAAAAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGG</left_flank>
        <right_flank>AAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGCCGGAAGTTGATAAACATAGACCTGAAATTTTTAATTCATGATTATTGAAAAAAAAAATCAGAATACTTACAAACTCATTTTCAACCGCAGCTGCGAGTTGGTCCTTGTTTCTGTCCTCTTCCGTTTTCCTATAAGATGATTTGATTGAGCTGGCTGCTTCAGAGATTTCCCGTGCTTGGTCGTGATGGTGGCAGTGGTGAGGAATGGCAATGGATCGGCGGGGTTTGTGGGGTCGCTGGCATCTCCTCCAGTCTCCTTCTCCTTGTCTTTTCGTGTGGTTTTGCTGATCTTTGGAAAATGCGCTGTAAAATTGTATATGTTTATCGTGCTATTTATAAAAAATCTATTTAAAAAAAAAAGAATCTGTGTTATTTGGGAAAAAAATGGAAAAACTAACAGTTTGTCTCATGAAACTCTTTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTC</canonical>
            <polymorphic>TCGCCGGAAGTTGATAAACATAGACCTGAAATTTTTAATTCATGATTATTGAAAAAAAAAATCAGAATACTTACAAACTCATTTTCAACCGCAGCTGCGAGTTGGTCCTTGTTTCTGTCCTCTTCCGTTTTCCTATAAGATGATTTGATTGAGCTGGCTGCTTCAGAGATTTCCCGTGCTTGGTCGTGATGGTGGCAGTGGTGAGGAATGGCAATGGATCGGCGGGGTTTGTGGGGTCGCTGGCATCTCCTCCAGTCTCCTTCTCCTTGTCTTTTCGTGTGGTTTTGCTGATCTTTGGAAAATGCGCTGTAAAATTGTATATGTTTATCGTGCTATTTATAAAAAATCTATTTAAAAAAAAAAGAATCTGTGTTATTTGGGAAAAAAATGGAAAAACTAACAGTTTGTCTCATGAAACTCTTTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGRAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTGTCTCATGAAACTCTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTCCCCCTCTTTTCTCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTGTCTCATGAAACTCTTTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTGTCTCATGAAACTCTTTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGRAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28461</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>737854</contig_pos>
        <strand>+</strand>
        <context>AAAAACACTT[G/T]TTGCGACGGC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTT</left_flank>
        <right_flank>TTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGA</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGAAAAAAAAAATCAGAATACTTACAAACTCATTTTCAACCGCAGCTGCGAGTTGGTCCTTGTTTCTGTCCTCTTCCGTTTTCCTATAAGATGATTTGATTGAGCTGGCTGCTTCAGAGATTTCCCGTGCTTGGTCGTGATGGTGGCAGTGGTGAGGAATGGCAATGGATCGGCGGGGTTTGTGGGGTCGCTGGCATCTCCTCCAGTCTCCTTCTCCTTGTCTTTTCGTGTGGTTTTGCTGATCTTTGGAAAATGCGCTGTAAAATTGTATATGTTTATCGTGCTATTTATAAAAAATCTATTTAAAAAAAAAAGAATCTGTGTTATTTGGGAAAAAAATGGAAAAACTAACAGTTTGTCTCATGAAACTCTTTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGG</canonical>
            <polymorphic>ATTGAAAAAAAAAATCAGAATACTTACAAACTCATTTTCAACCGCAGCTGCGAGTTGGTCCTTGTTTCTGTCCTCTTCCGTTTTCCTATAAGATGATTTGATTGAGCTGGCTGCTTCAGAGATTTCCCGTGCTTGGTCGTGATGGTGGCAGTGGTGAGGAATGGCAATGGATCGGCGGGGTTTGTGGGGTCGCTGGCATCTCCTCCAGTCTCCTTCTCCTTGTCTTTTCGTGTGGTTTTGCTGATCTTTGGAAAATGCGCTGTAAAATTGTATATGTTTATCGTGCTATTTATAAAAAATCTATTTAAAAAAAAAAGAATCTGTGTTATTTGGGAAAAAAATGGAAAAACTAACAGTTTGTCTCATGAAACTCTTTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTKTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTGTCTCATGAAACTCTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTCCCCCTCTTTTCTCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTGTCTCATGAAACTCTTTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTGTCTCATGAAACTCTTTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTKTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28462</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>737929</contig_pos>
        <strand>+</strand>
        <context>CACGCAACGC[C/G]GATAAGAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGC</left_flank>
        <right_flank>GATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCGTTTTCCTATAAGATGATTTGATTGAGCTGGCTGCTTCAGAGATTTCCCGTGCTTGGTCGTGATGGTGGCAGTGGTGAGGAATGGCAATGGATCGGCGGGGTTTGTGGGGTCGCTGGCATCTCCTCCAGTCTCCTTCTCCTTGTCTTTTCGTGTGGTTTTGCTGATCTTTGGAAAATGCGCTGTAAAATTGTATATGTTTATCGTGCTATTTATAAAAAATCTATTTAAAAAAAAAAGAATCTGTGTTATTTGGGAAAAAAATGGAAAAACTAACAGTTTGTCTCATGAAACTCTTTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATT</canonical>
            <polymorphic>TTCCGTTTTCCTATAAGATGATTTGATTGAGCTGGCTGCTTCAGAGATTTCCCGTGCTTGGTCGTGATGGTGGCAGTGGTGAGGAATGGCAATGGATCGGCGGGGTTTGTGGGGTCGCTGGCATCTCCTCCAGTCTCCTTCTCCTTGTCTTTTCGTGTGGTTTTGCTGATCTTTGGAAAATGCGCTGTAAAATTGTATATGTTTATCGTGCTATTTATAAAAAATCTATTTAAAAAAAAAAGAATCTGTGTTATTTGGGAAAAAAATGGAAAAACTAACAGTTTGTCTCATGAAACTCTTTAAAAACCTCCTTTTGATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCSGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATCTGCCGCGTTCACCGAGAAATTGTTGTGGCCCGTCGAATGAGTGATGAACAAAAGAAGAGGAGAAGAGGCAGAGGGGTAAAGATAAATCGCATCTCATAAGTTTTCCAAATATGAAAAACAAGAAAAAATGAATTTGGGAATTTCGGATGTTTTTCGTTTTTTTTTTATTTTTCCAAGGAAAGAGAGTTAGAAATTGCAAATTCAAAATTACTGAATACCGATATTTGATCTTAAAAAGGGAGAAAGGGAGACTTTTTAGAATCACAGTTCACATGACTATCGTTCCGTTTTCAAATGCAACTCCAGTACACTTTCAATAGTTTTTTCAAGTTTTCTTATTTCGATAGCCATTGAAAACTGGGATAGTGTTAGTCTGGAAACCTGAAAATAATAAACAGAAACAAAACCGGCTTCAGTTTTTAATCAAAAAATTTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>432 374 89 70 19 11 5</canonical_bands>
                <polymorphic_bands>432 374 89 81 19 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTCAAATTGAGGAAGAATTT</pcr_primer_p1>
		<pcr_primer_p2>GATATACACGCACACGAACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCGGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATC</canonical_amplicon>
		<polymorphic_amplicon>GATTTCAAATTGAGGAAGAATTTAGTTTTAAAACTTCAAATTCAAAAATTCTTAAGTCGCGGAAAAAAAAATCAAGCGCGCTCTAATGCGAAAACTCGTAAAAACACTTTTTGCGACGGCCAACACTATCGGAGAACAGAGAAAAGAGACTAATGTGCGAGAGGCCGCGTCGCGCACGCAACGCSGATAAGAGAAAAGAGGGGGAAGAGACGTTGTATTGCGGCTGTGTGTTCGTGTGCGTGTATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28463</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>754089</contig_pos>
        <strand></strand>
        <context>ttacaaaata[T/A]atgatacggg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CAACGGTGGGTAAAAAGAAGTTGATTAAAACAATTTGGAATTACAAAATA</left_flank>
        <right_flank>ATGATACGGGGGTACAAAATGCATGATTCAATTGTATTTTTCGTATCTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGAAATTTAGAATTTTAAAAAATAGGAAAATTTGAAAAATTTGAAAAAAAATTAAAATAGAAAAAATTGAAAAATTTGAAAAATTAAACATTTGAAAAAAAATAGTGCCTAACCAGGTGGAGTTGTTCATAATGTAGTGTCATGTAGAATGACACTAGGTGTTATTAAGAGTCACAGATTAGAGTAGGGTTGATGAACAATGTAACATGTAGTGCGATTTGGATTCACACATTAGATACCAGATTTTATTACATCTATTCATTTACGAGTCTAGATGCACCTATTGTTTTAGGAGTGTGAACTGGACGATTTCCATTGTGAGCAAAATTTTTTTAAATCTGAAAAGTCTATTTAGAAAAGGAATCGGGGAGACAATAGGAATTATTGAGAAAAGTTGAAATTTCTGTATCTATAGAAGACAGGTCAGTAACTCTGCGATGATGAAATCAACGGTGGGTAAAAAGAAGTTGATTAAAACAATTTGGAATTACAAAATATATGATACGGGGGTACAAAATGCATGATTCAATTGTATTTTTCGTATCTTTGCGCTGAAATTTTACACCTAAATGAAGTTGCGACACATCTCCGAAATAAGTTCATACTAACATAAAATTCGAGTAAGGCGTTGCTGGCTCCCATTTAAAGTGCGAAAATTCAAATAATTCTTCAGTAAATAAGCTAAGTTTCAAGTAATTTGATAAACTTCAAGCTGAGTTATTGTTTCATCTCATGATCATCTCAAAAGCATACGTTTTTAGACAATTTTAAGAATACACAAACTTAAGGAATCGCTTTGAAAATATCACAAGCTATTATTTCATTCAAAAATTGTATTGTCCATTGGAAAACATTCAGATATCACAAACCAACTCACCATTTTGCTCATTAACTTCTAACTACAATGAATATTAAAAAGTTCATTTATTTGAAACCAATTCTTCGATGTCAATTCGAACTACGACTCCAGTTTTTTTTTTCGTAGAGAAAAAATAATA</canonical>
            <polymorphic>TAAGAAATTTAGAATTTTAAAAAATAGGAAAATTTGAAAAATTTGAAAAAAAATTAAAATAGAAAAAATTGAAAAATTTGAAAAATTAAACATTTGAAAAAAAATAGTGCCTAACCAGGTGGAGTTGTTCATAATGTAGTGTCATGTAGAATGACACTAGGTGTTATTAAGAGTCACAGATTAGAGTAGGGTTGATGAACAATGTAACATGTAGTGCGATTTGGATTCACACATTAGATACCAGATTTTATTACATCTATTCATTTACGAGTCTAGATGCACCTATTGTTTTAGGAGTGTGAACTGGACGATTTCCATTGTGAGCAAAATTTTTTTAAATCTGAAAAGTCTATTTAGAAAAGGAATCGGGGAGACAATAGGAATTATTGAGAAAAGTTGAAATTTCTGTATCTATAGAAGACAGGTCAGTAACTCTGCGATGATGAAATCAACGGTGGGTAAAAAGAAGTTGATTAAAACAATTTGGAATTACAAAATAWATGATACGGGGGTACAAAATGCATGATTCAATTGTATTTTTCGTATCTTTGCGCTGAAATTTTACACCTAAATGAAGTTGCGACACATCTCCGAAATAAGTTCATACTAACATAAAATTCGAGTAAGGCGTTGCTGGCTCCCATTTAAAGTGCGAAAATTCAAATAATTCTTCAGTAAATAAGCTAAGTTTCAAGTAATTTGATAAACTTCAAGCTGAGTTATTGTTTCATCTCATGATCATCTCAAAAGCATACGTTTTTAGACAATTTTAAGAATACACAAACTTAAGGAATCGCTTTGAAAATATCACAAGCTATTATTTCATTCAAAAATTGTATTGTCCATTGGAAAACATTCAGATATCACAAACCAACTCACCATTTTGCTCATTAACTTCTAACTACAATGAATATTAAAAAGTTCATTTATTTGAAACCAATTCTTCGATGTCAATTCGAACTACGACTCCAGTTTTTTTTTTCGTAGAGAAAAAATAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACTCTGCGATGATGAAATC</pcr_primer_p1>
		<pcr_primer_p2>GGACAATACAATTTTTGAATGAA</pcr_primer_p2>
		<pcr_amplicon_size>415</pcr_amplicon_size>
		<canonical_amplicon>TAACTCTGCGATGATGAAATCAACGGTGGGTAAAAAGAAGTTGATTAAAACAATTTGGAATTACAAAATATATGATACGGGGGTACAAAATGCATGATTCAATTGTATTTTTCGTATCTTTGCGCTGAAATTTTACACCTAAATGAAGTTGCGACACATCTCCGAAATAAGTTCATACTAACATAAAATTCGAGTAAGGCGTTGCTGGCTCCCATTTAAAGTGCGAAAATTCAAATAATTCTTCAGTAAATAAGCTAAGTTTCAAGTAATTTGATAAACTTCAAGCTGAGTTATTGTTTCATCTCATGATCATCTCAAAAGCATACGTTTTTAGACAATTTTAAGAATACACAAACTTAAGGAATCGCTTTGAAAATATCACAAGCTATTATTTCATTCAAAAATTGTATTGTCC</canonical_amplicon>
		<polymorphic_amplicon>TAACTCTGCGATGATGAAATCAACGGTGGGTAAAAAGAAGTTGATTAAAACAATTTGGAATTACAAAATAWATGATACGGGGGTACAAAATGCATGATTCAATTGTATTTTTCGTATCTTTGCGCTGAAATTTTACACCTAAATGAAGTTGCGACACATCTCCGAAATAAGTTCATACTAACATAAAATTCGAGTAAGGCGTTGCTGGCTCCCATTTAAAGTGCGAAAATTCAAATAATTCTTCAGTAAATAAGCTAAGTTTCAAGTAATTTGATAAACTTCAAGCTGAGTTATTGTTTCATCTCATGATCATCTCAAAAGCATACGTTTTTAGACAATTTTAAGAATACACAAACTTAAGGAATCGCTTTGAAAATATCACAAGCTATTATTTCATTCAAAAATTGTATTGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28464</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>754359</contig_pos>
        <strand></strand>
        <context>ttagacaatt[T/A]taagaataca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTATTGTTTCATCTCATGATCATCTCAAAAGCATACGTTTTTAGACAATT</left_flank>
        <right_flank>TAAGAATACACAAACTTAAGGAATCGCTTTGAAAATATCACAAGCTATTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCTAGATGCACCTATTGTTTTAGGAGTGTGAACTGGACGATTTCCATTGTGAGCAAAATTTTTTTAAATCTGAAAAGTCTATTTAGAAAAGGAATCGGGGAGACAATAGGAATTATTGAGAAAAGTTGAAATTTCTGTATCTATAGAAGACAGGTCAGTAACTCTGCGATGATGAAATCAACGGTGGGTAAAAAGAAGTTGATTAAAACAATTTGGAATTACAAAATATATGATACGGGGGTACAAAATGCATGATTCAATTGTATTTTTCGTATCTTTGCGCTGAAATTTTACACCTAAATGAAGTTGCGACACATCTCCGAAATAAGTTCATACTAACATAAAATTCGAGTAAGGCGTTGCTGGCTCCCATTTAAAGTGCGAAAATTCAAATAATTCTTCAGTAAATAAGCTAAGTTTCAAGTAATTTGATAAACTTCAAGCTGAGTTATTGTTTCATCTCATGATCATCTCAAAAGCATACGTTTTTAGACAATTTTAAGAATACACAAACTTAAGGAATCGCTTTGAAAATATCACAAGCTATTATTTCATTCAAAAATTGTATTGTCCATTGGAAAACATTCAGATATCACAAACCAACTCACCATTTTGCTCATTAACTTCTAACTACAATGAATATTAAAAAGTTCATTTATTTGAAACCAATTCTTCGATGTCAATTCGAACTACGACTCCAGTTTTTTTTTTCGTAGAGAAAAAATAATACAACAATAAACTTTTTAAATGTTTTTTTAAGAAATCATAGTAATAACATTTTATTGATTTAAATTTAAAACTTCAACAAACTCCAGTATATTGACAAATTTGATTGAAGTGTGCATACACGGAGGTAATTATTGTTTTGAACGGATCAGAGCCTTCAGTGCAACTAGCCACTCCAATGACAAAGTGTCTTCCGTTGACGTCATTAATCACACTTCCACCACTGTCACCCTGTACAATCAAATTATTTTAGAGTAGGATACAAACTTTCCA</canonical>
            <polymorphic>GTCTAGATGCACCTATTGTTTTAGGAGTGTGAACTGGACGATTTCCATTGTGAGCAAAATTTTTTTAAATCTGAAAAGTCTATTTAGAAAAGGAATCGGGGAGACAATAGGAATTATTGAGAAAAGTTGAAATTTCTGTATCTATAGAAGACAGGTCAGTAACTCTGCGATGATGAAATCAACGGTGGGTAAAAAGAAGTTGATTAAAACAATTTGGAATTACAAAATATATGATACGGGGGTACAAAATGCATGATTCAATTGTATTTTTCGTATCTTTGCGCTGAAATTTTACACCTAAATGAAGTTGCGACACATCTCCGAAATAAGTTCATACTAACATAAAATTCGAGTAAGGCGTTGCTGGCTCCCATTTAAAGTGCGAAAATTCAAATAATTCTTCAGTAAATAAGCTAAGTTTCAAGTAATTTGATAAACTTCAAGCTGAGTTATTGTTTCATCTCATGATCATCTCAAAAGCATACGTTTTTAGACAATTWTAAGAATACACAAACTTAAGGAATCGCTTTGAAAATATCACAAGCTATTATTTCATTCAAAAATTGTATTGTCCATTGGAAAACATTCAGATATCACAAACCAACTCACCATTTTGCTCATTAACTTCTAACTACAATGAATATTAAAAAGTTCATTTATTTGAAACCAATTCTTCGATGTCAATTCGAACTACGACTCCAGTTTTTTTTTTCGTAGAGAAAAAATAATACAACAATAAACTTTTTAAATGTTTTTTTAAGAAATCATAGTAATAACATTTTATTGATTTAAATTTAAAACTTCAACAAACTCCAGTATATTGACAAATTTGATTGAAGTGTGCATACACGGAGGTAATTATTGTTTTGAACGGATCAGAGCCTTCAGTGCAACTAGCCACTCCAATGACAAAGTGTCTTCCGTTGACGTCATTAATCACACTTCCACCACTGTCACCCTGTACAATCAAATTATTTTAGAGTAGGATACAAACTTTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>171 139 138 125 105 101 67 65 32 23 16 12 6</canonical_bands>
                <polymorphic_bands>171 141 139 138 105 101 67 65 32 23 12 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAACTCTGCGATGATGAAATC</pcr_primer_p1>
		<pcr_primer_p2>GGACAATACAATTTTTGAATGAA</pcr_primer_p2>
		<pcr_amplicon_size>415</pcr_amplicon_size>
		<canonical_amplicon>TAACTCTGCGATGATGAAATCAACGGTGGGTAAAAAGAAGTTGATTAAAACAATTTGGAATTACAAAATATATGATACGGGGGTACAAAATGCATGATTCAATTGTATTTTTCGTATCTTTGCGCTGAAATTTTACACCTAAATGAAGTTGCGACACATCTCCGAAATAAGTTCATACTAACATAAAATTCGAGTAAGGCGTTGCTGGCTCCCATTTAAAGTGCGAAAATTCAAATAATTCTTCAGTAAATAAGCTAAGTTTCAAGTAATTTGATAAACTTCAAGCTGAGTTATTGTTTCATCTCATGATCATCTCAAAAGCATACGTTTTTAGACAATTTTAAGAATACACAAACTTAAGGAATCGCTTTGAAAATATCACAAGCTATTATTTCATTCAAAAATTGTATTGTCC</canonical_amplicon>
		<polymorphic_amplicon>TAACTCTGCGATGATGAAATCAACGGTGGGTAAAAAGAAGTTGATTAAAACAATTTGGAATTACAAAATATATGATACGGGGGTACAAAATGCATGATTCAATTGTATTTTTCGTATCTTTGCGCTGAAATTTTACACCTAAATGAAGTTGCGACACATCTCCGAAATAAGTTCATACTAACATAAAATTCGAGTAAGGCGTTGCTGGCTCCCATTTAAAGTGCGAAAATTCAAATAATTCTTCAGTAAATAAGCTAAGTTTCAAGTAATTTGATAAACTTCAAGCTGAGTTATTGTTTCATCTCATGATCATCTCAAAAGCATACGTTTTTAGACAATTWTAAGAATACACAAACTTAAGGAATCGCTTTGAAAATATCACAAGCTATTATTTCATTCAAAAATTGTATTGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28465</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>755674</contig_pos>
        <strand>+</strand>
        <context>AGTATATTTC[C/T]TCAAACAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCCCATGGAGCCTGACTCCCAGAAATTGGAACTCCACCGAGTATATTTC</left_flank>
        <right_flank>TCAAACAAGAAATATTTTTTATTAGTTTCAATAGTGCTAGATTATTTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCATAAATATGGACTTACTTGAAATGCAAGCCGGCTGAGCAAAATCATTTAATTGAATATCTTCTTTTAATTCCCAAATCATCATGTCGTCATAAACGGGATCCGCACGGTAGCAGTAGTTAAAAAGAATTATCTGAAATTTTGAAATTATCATGGTTCAAAAAAACTCATTTTCACCTTTGAGACTTTTTCGGAAACGAGCTCATCCTTCTGATTAGTAACATAAAATAGATTGTTGTTTTGGGTGAACACCCAATCGTTTTCGCTGAAATTATAGATAACATGGAAAGCCAAACAATCTTATATCTTACTTGCAGAACGCTGTTGATTGTGTTAGGATGGGATCATAATCTCCTTGATGACTAATTACGCAATGAGAAGCGGATAAGATGTGTCTAGGTGAGATTATTGTTGCCGAGCATCTCCGATTTCCAAATCTGATGCGAACAGCCCATGGAGCCTGACTCCCAGAAATTGGAACTCCACCGAGTATATTTCCTCAAACAAGAAATATTTTTTATTAGTTTCAATAGTGCTAGATTATTTTTAAACACTGTAAAACCTGTATTAGAAGGACCCATCGGCTTTTGACTCAGAGCCAATTCATCTCGGTTCAACTGATAAATTGTTTATAATAACAAAAGTGTTTCAGTAGTTGACAAATTGTCGATATCTCTCATAGAAAGCTATAGAAATCAGTTTGAACTTGATAGTGTTGAGCGCCCTTCTATTACTAGTTTTACCGTACTTCTTCTGCTCGAAAACTGTTCCAAGGGTCCTGGTTTCGTTCCACAATATGTTTTCAATTGTTGATTTTCTTCCCAGCTTAAAATACCGCATTCGATTCCTACGAAGAACAAGAATATCAAATAGAGGAAACGATTCATGTTGAAATGACAGTTTGAGAGAAGTATTTCTTCTTTTATAGTCAACCGAGTAGTTTATGAATGACTTGGTATGTGGGTGTTGGGGTAGAGAATTTTATGGGTTACAGTGTTA</canonical>
            <polymorphic>TTCATAAATATGGACTTACTTGAAATGCAAGCCGGCTGAGCAAAATCATTTAATTGAATATCTTCTTTTAATTCCCAAATCATCATGTCGTCATAAACGGGATCCGCACGGTAGCAGTAGTTAAAAAGAATTATCTGAAATTTTGAAATTATCATGGTTCAAAAAAACTCATTTTCACCTTTGAGACTTTTTCGGAAACGAGCTCATCCTTCTGATTAGTAACATAAAATAGATTGTTGTTTTGGGTGAACACCCAATCGTTTTCGCTGAAATTATAGATAACATGGAAAGCCAAACAATCTTATATCTTACTTGCAGAACGCTGTTGATTGTGTTAGGATGGGATCATAATCTCCTTGATGACTAATTACGCAATGAGAAGCGGATAAGATGTGTCTAGGTGAGATTATTGTTGCCGAGCATCTCCGATTTCCAAATCTGATGCGAACAGCCCATGGAGCCTGACTCCCAGAAATTGGAACTCCACCGAGTATATTTCYTCAAACAAGAAATATTTTTTATTAGTTTCAATAGTGCTAGATTATTTTTAAACACTGTAAAACCTGTATTAGAAGGACCCATCGGCTTTTGACTCAGAGCCAATTCATCTCGGTTCAACTGATAAATTGTTTATAATAACAAAAGTGTTTCAGTAGTTGACAAATTGTCGATATCTCTCATAGAAAGCTATAGAAATCAGTTTGAACTTGATAGTGTTGAGCGCCCTTCTATTACTAGTTTTACCGTACTTCTTCTGCTCGAAAACTGTTCCAAGGGTCCTGGTTTCGTTCCACAATATGTTTTCAATTGTTGATTTTCTTCCCAGCTTAAAATACCGCATTCGATTCCTACGAAGAACAAGAATATCAAATAGAGGAAACGATTCATGTTGAAATGACAGTTTGAGAGAAGTATTTCTTCTTTTATAGTCAACCGAGTAGTTTATGAATGACTTGGTATGTGGGTGTTGGGGTAGAGAATTTTATGGGTTACAGTGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGTCTAGGTGAGATTATTGTTG</pcr_primer_p1>
		<pcr_primer_p2>CAGTTTTCGAGCAGAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>377</pcr_amplicon_size>
		<canonical_amplicon>TGTGTCTAGGTGAGATTATTGTTGCCGAGCATCTCCGATTTCCAAATCTGATGCGAACAGCCCATGGAGCCTGACTCCCAGAAATTGGAACTCCACCGAGTATATTTCCTCAAACAAGAAATATTTTTTATTAGTTTCAATAGTGCTAGATTATTTTTAAACACTGTAAAACCTGTATTAGAAGGACCCATCGGCTTTTGACTCAGAGCCAATTCATCTCGGTTCAACTGATAAATTGTTTATAATAACAAAAGTGTTTCAGTAGTTGACAAATTGTCGATATCTCTCATAGAAAGCTATAGAAATCAGTTTGAACTTGATAGTGTTGAGCGCCCTTCTATTACTAGTTTTACCGTACTTCTTCTGCTCGAAAACTG</canonical_amplicon>
		<polymorphic_amplicon>TGTGTCTAGGTGAGATTATTGTTGCCGAGCATCTCCGATTTCCAAATCTGATGCGAACAGCCCATGGAGCCTGACTCCCAGAAATTGGAACTCCACCGAGTATATTTCYTCAAACAAGAAATATTTTTTATTAGTTTCAATAGTGCTAGATTATTTTTAAACACTGTAAAACCTGTATTAGAAGGACCCATCGGCTTTTGACTCAGAGCCAATTCATCTCGGTTCAACTGATAAATTGTTTATAATAACAAAAGTGTTTCAGTAGTTGACAAATTGTCGATATCTCTCATAGAAAGCTATAGAAATCAGTTTGAACTTGATAGTGTTGAGCGCCCTTCTATTACTAGTTTTACCGTACTTCTTCTGCTCGAAAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28466</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>805244</contig_pos>
        <strand>+</strand>
        <context>TGCTATTTTC[A/G]GAAACTAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATACTAATGAACCAACATACGAGTTTTCCTGCTATTTTTGCTATTTTC</left_flank>
        <right_flank>GAAACTAAAGTTGTTCCGGAAATGGTCGAGAGGAAAGAGAGATGAAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGGTAATAAAAGTAAAATGGTATAGAAACAGTCTAACACACCCCGGTGTATCTTCTAGATAATTTTGAAGTGGTGGCCTAACTTTAGCAAGTTGGGTTTTCTAGGCCACCATCCTTTTTTGGCTTAGAAATGGCTTGACCTGACCCTGGTGTAGTTTCTAGGTCATTTTTAAGTGGTGGCCTAACTTTTGCAAGTTGAGTTTTCTAGGCCATCAAAGAAAAATGCTATAGAAACGGCCTAACACACCCCGGTGTGTCTTCTAGGTAATTTCGAAGTGATGGCCTAACTTTTGCAATTTGAGTTTTCTAGGCCACCATCCCTTTTTGGCTTAGAAATGGCTTGACCTTACCCTGGTGTAGTTTCTAGGTCATTTTTTGTTTTCTAAGTCATTGGGGAGTGGTGGCCAAACTTTTACAAACTTTTGTGGTCACCACGTCAAAATGGCCAAAATACTAATGAACCAACATACGAGTTTTCCTGCTATTTTTGCTATTTTCGGAAACTAAAGTTGTTCCGGAAATGGTCGAGAGGAAAGAGAGATGAAAATTTACAGGTAACCAATTATTTTCAAATCAAATTGAATTTTTCGAAGAAAATTCGTCTTTCAACATACTTTTTTCACTTTGAAAACAGAAAAATCTAAACCAATTTGTACCAAAGTTTCAATAAATAATATATTTCAGAAAATATTTTTTCGGAGAAGAATTGGTGATTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTTTAAAGAAATTTTTTTAAAAATGCTAACCAGTTTTAAA</canonical>
            <polymorphic>CTAGGTAATAAAAGTAAAATGGTATAGAAACAGTCTAACACACCCCGGTGTATCTTCTAGATAATTTTGAAGTGGTGGCCTAACTTTAGCAAGTTGGGTTTTCTAGGCCACCATCCTTTTTTGGCTTAGAAATGGCTTGACCTGACCCTGGTGTAGTTTCTAGGTCATTTTTAAGTGGTGGCCTAACTTTTGCAAGTTGAGTTTTCTAGGCCATCAAAGAAAAATGCTATAGAAACGGCCTAACACACCCCGGTGTGTCTTCTAGGTAATTTCGAAGTGATGGCCTAACTTTTGCAATTTGAGTTTTCTAGGCCACCATCCCTTTTTGGCTTAGAAATGGCTTGACCTTACCCTGGTGTAGTTTCTAGGTCATTTTTTGTTTTCTAAGTCATTGGGGAGTGGTGGCCAAACTTTTACAAACTTTTGTGGTCACCACGTCAAAATGGCCAAAATACTAATGAACCAACATACGAGTTTTCCTGCTATTTTTGCTATTTTCRGAAACTAAAGTTGTTCCGGAAATGGTCGAGAGGAAAGAGAGATGAAAATTTACAGGTAACCAATTATTTTCAAATCAAATTGAATTTTTCGAAGAAAATTCGTCTTTCAACATACTTTTTTCACTTTGAAAACAGAAAAATCTAAACCAATTTGTACCAAAGTTTCAATAAATAATATATTTCAGAAAATATTTTTTCGGAGAAGAATTGGTGATTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTTTAAAGAAATTTTTTTAAAAATGCTAACCAGTTTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAAAAAGTCTCTCGAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACCTGTAAATTTTCATCTCTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>719</pcr_amplicon_size>
		<canonical_amplicon>CGGAAACTAAAGTTGTTCCGGAAATGGTCGAGAGGAAAGAGAGATGAAAATTTACAGGT</canonical_amplicon>
		<polymorphic_amplicon>CRGAAACTAAAGTTGTTCCGGAAATGGTCGAGAGGAAAGAGAGATGAAAATTTACAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28467</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>805356</contig_pos>
        <strand>+</strand>
        <context>GTCTTTCAAC[C/T]TACTTTTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTATTTTCAAATCAAATTGAATTTTTCGAAGAAAATTCGTCTTTCAAC</left_flank>
        <right_flank>TACTTTTTTCACTTTGAAAACAGAAAAATCTAAACCAATTTGTACCAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCTTTTTTGGCTTAGAAATGGCTTGACCTGACCCTGGTGTAGTTTCTAGGTCATTTTTAAGTGGTGGCCTAACTTTTGCAAGTTGAGTTTTCTAGGCCATCAAAGAAAAATGCTATAGAAACGGCCTAACACACCCCGGTGTGTCTTCTAGGTAATTTCGAAGTGATGGCCTAACTTTTGCAATTTGAGTTTTCTAGGCCACCATCCCTTTTTGGCTTAGAAATGGCTTGACCTTACCCTGGTGTAGTTTCTAGGTCATTTTTTGTTTTCTAAGTCATTGGGGAGTGGTGGCCAAACTTTTACAAACTTTTGTGGTCACCACGTCAAAATGGCCAAAATACTAATGAACCAACATACGAGTTTTCCTGCTATTTTTGCTATTTTCGGAAACTAAAGTTGTTCCGGAAATGGTCGAGAGGAAAGAGAGATGAAAATTTACAGGTAACCAATTATTTTCAAATCAAATTGAATTTTTCGAAGAAAATTCGTCTTTCAACATACTTTTTTCACTTTGAAAACAGAAAAATCTAAACCAATTTGTACCAAAGTTTCAATAAATAATATATTTCAGAAAATATTTTTTCGGAGAAGAATTGGTGATTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTTTAAAGAAATTTTTTTAAAAATGCTAACCAGTTTTAAAAATCAATTATTGTTTTTTTTTTGGAATTTTAGAATTTACAGAATTTAGAGAATTTCGAAACTTTCTGACTTTTAAATACTTCTGAAAATTGTTTCTCAGTTTTTCTGTGATT</canonical>
            <polymorphic>ATCCTTTTTTGGCTTAGAAATGGCTTGACCTGACCCTGGTGTAGTTTCTAGGTCATTTTTAAGTGGTGGCCTAACTTTTGCAAGTTGAGTTTTCTAGGCCATCAAAGAAAAATGCTATAGAAACGGCCTAACACACCCCGGTGTGTCTTCTAGGTAATTTCGAAGTGATGGCCTAACTTTTGCAATTTGAGTTTTCTAGGCCACCATCCCTTTTTGGCTTAGAAATGGCTTGACCTTACCCTGGTGTAGTTTCTAGGTCATTTTTTGTTTTCTAAGTCATTGGGGAGTGGTGGCCAAACTTTTACAAACTTTTGTGGTCACCACGTCAAAATGGCCAAAATACTAATGAACCAACATACGAGTTTTCCTGCTATTTTTGCTATTTTCGGAAACTAAAGTTGTTCCGGAAATGGTCGAGAGGAAAGAGAGATGAAAATTTACAGGTAACCAATTATTTTCAAATCAAATTGAATTTTTCGAAGAAAATTCGTCTTTCAACYTACTTTTTTCACTTTGAAAACAGAAAAATCTAAACCAATTTGTACCAAAGTTTCAATAAATAATATATTTCAGAAAATATTTTTTCGGAGAAGAATTGGTGATTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTTTAAAGAAATTTTTTTAAAAATGCTAACCAGTTTTAAAAATCAATTATTGTTTTTTTTTTGGAATTTTAGAATTTACAGAATTTAGAGAATTTCGAAACTTTCTGACTTTTAAATACTTCTGAAAATTGTTTCTCAGTTTTTCTGTGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTTTCCTGCTATTTTTGCTAT</pcr_primer_p1>
		<pcr_primer_p2>AATAAAATCACCAATTCTTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGTTTTCCTGCTATTTTTGCTATTTTCGGAAACTAAAGTTGTTCCGGAAATGGTCGAGAGGAAAGAGAGATGAAAATTTACAGGTAACCAATTATTTTCAAATCAAATTGAATTTTTCGAAGAAAATTCGTCTTTCAACATACTTTTTTCACTTTGAAAACAGAAAAATCTAAACCAATTTGTACCAAAGTTTCAATAAATAATATATTTCAGAAAATATTTTTTCGGAGAAGAATTGGTGATTTTATT</canonical_amplicon>
		<polymorphic_amplicon>AGTTTTCCTGCTATTTTTGCTATTTTCGGAAACTAAAGTTGTTCCGGAAATGGTCGAGAGGAAAGAGAGATGAAAATTTACAGGTAACCAATTATTTTCAAATCAAATTGAATTTTTCGAAGAAAATTCGTCTTTCAACYTACTTTTTTCACTTTGAAAACAGAAAAATCTAAACCAATTTGTACCAAAGTTTCAATAAATAATATATTTCAGAAAATATTTTTTCGGAGAAGAATTGGTGATTTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28468</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>805389</contig_pos>
        <strand>+</strand>
        <context>GAAAAATCTA[A/G]ACCAATTTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATTCGTCTTTCAACATACTTTTTTCACTTTGAAAACAGAAAAATCTA</left_flank>
        <right_flank>ACCAATTTGTACCAAAGTTTCAATAAATAATATATTTCAGAAAATATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCTGGTGTAGTTTCTAGGTCATTTTTAAGTGGTGGCCTAACTTTTGCAAGTTGAGTTTTCTAGGCCATCAAAGAAAAATGCTATAGAAACGGCCTAACACACCCCGGTGTGTCTTCTAGGTAATTTCGAAGTGATGGCCTAACTTTTGCAATTTGAGTTTTCTAGGCCACCATCCCTTTTTGGCTTAGAAATGGCTTGACCTTACCCTGGTGTAGTTTCTAGGTCATTTTTTGTTTTCTAAGTCATTGGGGAGTGGTGGCCAAACTTTTACAAACTTTTGTGGTCACCACGTCAAAATGGCCAAAATACTAATGAACCAACATACGAGTTTTCCTGCTATTTTTGCTATTTTCGGAAACTAAAGTTGTTCCGGAAATGGTCGAGAGGAAAGAGAGATGAAAATTTACAGGTAACCAATTATTTTCAAATCAAATTGAATTTTTCGAAGAAAATTCGTCTTTCAACATACTTTTTTCACTTTGAAAACAGAAAAATCTAAACCAATTTGTACCAAAGTTTCAATAAATAATATATTTCAGAAAATATTTTTTCGGAGAAGAATTGGTGATTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTTTAAAGAAATTTTTTTAAAAATGCTAACCAGTTTTAAAAATCAATTATTGTTTTTTTTTTGGAATTTTAGAATTTACAGAATTTAGAGAATTTCGAAACTTTCTGACTTTTAAATACTTCTGAAAATTGTTTCTCAGTTTTTCTGTGATTTCCCGAAATTTTTGATGTATTGCATTTTCTAAG</canonical>
            <polymorphic>CCCTGGTGTAGTTTCTAGGTCATTTTTAAGTGGTGGCCTAACTTTTGCAAGTTGAGTTTTCTAGGCCATCAAAGAAAAATGCTATAGAAACGGCCTAACACACCCCGGTGTGTCTTCTAGGTAATTTCGAAGTGATGGCCTAACTTTTGCAATTTGAGTTTTCTAGGCCACCATCCCTTTTTGGCTTAGAAATGGCTTGACCTTACCCTGGTGTAGTTTCTAGGTCATTTTTTGTTTTCTAAGTCATTGGGGAGTGGTGGCCAAACTTTTACAAACTTTTGTGGTCACCACGTCAAAATGGCCAAAATACTAATGAACCAACATACGAGTTTTCCTGCTATTTTTGCTATTTTCGGAAACTAAAGTTGTTCCGGAAATGGTCGAGAGGAAAGAGAGATGAAAATTTACAGGTAACCAATTATTTTCAAATCAAATTGAATTTTTCGAAGAAAATTCGTCTTTCAACATACTTTTTTCACTTTGAAAACAGAAAAATCTARACCAATTTGTACCAAAGTTTCAATAAATAATATATTTCAGAAAATATTTTTTCGGAGAAGAATTGGTGATTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTTTAAAGAAATTTTTTTAAAAATGCTAACCAGTTTTAAAAATCAATTATTGTTTTTTTTTTGGAATTTTAGAATTTACAGAATTTAGAGAATTTCGAAACTTTCTGACTTTTAAATACTTCTGAAAATTGTTTCTCAGTTTTTCTGTGATTTCCCGAAATTTTTGATGTATTGCATTTTCTAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTTTCCTGCTATTTTTGCTAT</pcr_primer_p1>
		<pcr_primer_p2>AATAAAATCACCAATTCTTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGTTTTCCTGCTATTTTTGCTATTTTCGGAAACTAAAGTTGTTCCGGAAATGGTCGAGAGGAAAGAGAGATGAAAATTTACAGGTAACCAATTATTTTCAAATCAAATTGAATTTTTCGAAGAAAATTCGTCTTTCAACATACTTTTTTCACTTTGAAAACAGAAAAATCTAAACCAATTTGTACCAAAGTTTCAATAAATAATATATTTCAGAAAATATTTTTTCGGAGAAGAATTGGTGATTTTATT</canonical_amplicon>
		<polymorphic_amplicon>AGTTTTCCTGCTATTTTTGCTATTTTCGGAAACTAAAGTTGTTCCGGAAATGGTCGAGAGGAAAGAGAGATGAAAATTTACAGGTAACCAATTATTTTCAAATCAAATTGAATTTTTCGAAGAAAATTCGTCTTTCAACATACTTTTTTCACTTTGAAAACAGAAAAATCTARACCAATTTGTACCAAAGTTTCAATAAATAATATATTTCAGAAAATATTTTTTCGGAGAAGAATTGGTGATTTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28469</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>805441</contig_pos>
        <strand>+</strand>
        <context>AAATATTTTT[C/T]CGGAGAAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAATTTGTACCAAAGTTTCAATAAATAATATATTTCAGAAAATATTTTT</left_flank>
        <right_flank>CGGAGAAGAATTGGTGATTTTATTTCTAAGCCTGAAAGATTTTAATTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGTTTTCTAGGCCATCAAAGAAAAATGCTATAGAAACGGCCTAACACACCCCGGTGTGTCTTCTAGGTAATTTCGAAGTGATGGCCTAACTTTTGCAATTTGAGTTTTCTAGGCCACCATCCCTTTTTGGCTTAGAAATGGCTTGACCTTACCCTGGTGTAGTTTCTAGGTCATTTTTTGTTTTCTAAGTCATTGGGGAGTGGTGGCCAAACTTTTACAAACTTTTGTGGTCACCACGTCAAAATGGCCAAAATACTAATGAACCAACATACGAGTTTTCCTGCTATTTTTGCTATTTTCGGAAACTAAAGTTGTTCCGGAAATGGTCGAGAGGAAAGAGAGATGAAAATTTACAGGTAACCAATTATTTTCAAATCAAATTGAATTTTTCGAAGAAAATTCGTCTTTCAACATACTTTTTTCACTTTGAAAACAGAAAAATCTAAACCAATTTGTACCAAAGTTTCAATAAATAATATATTTCAGAAAATATTTTTTCGGAGAAGAATTGGTGATTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTTTAAAGAAATTTTTTTAAAAATGCTAACCAGTTTTAAAAATCAATTATTGTTTTTTTTTTGGAATTTTAGAATTTACAGAATTTAGAGAATTTCGAAACTTTCTGACTTTTAAATACTTCTGAAAATTGTTTCTCAGTTTTTCTGTGATTTCCCGAAATTTTTGATGTATTGCATTTTCTAAGAATTTTCACAATGAGTCTCTGAAATCTCTAAAAATTCCAATTTTCCAGGAAA</canonical>
            <polymorphic>TGAGTTTTCTAGGCCATCAAAGAAAAATGCTATAGAAACGGCCTAACACACCCCGGTGTGTCTTCTAGGTAATTTCGAAGTGATGGCCTAACTTTTGCAATTTGAGTTTTCTAGGCCACCATCCCTTTTTGGCTTAGAAATGGCTTGACCTTACCCTGGTGTAGTTTCTAGGTCATTTTTTGTTTTCTAAGTCATTGGGGAGTGGTGGCCAAACTTTTACAAACTTTTGTGGTCACCACGTCAAAATGGCCAAAATACTAATGAACCAACATACGAGTTTTCCTGCTATTTTTGCTATTTTCGGAAACTAAAGTTGTTCCGGAAATGGTCGAGAGGAAAGAGAGATGAAAATTTACAGGTAACCAATTATTTTCAAATCAAATTGAATTTTTCGAAGAAAATTCGTCTTTCAACATACTTTTTTCACTTTGAAAACAGAAAAATCTAAACCAATTTGTACCAAAGTTTCAATAAATAATATATTTCAGAAAATATTTTTYCGGAGAAGAATTGGTGATTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTTTAAAGAAATTTTTTTAAAAATGCTAACCAGTTTTAAAAATCAATTATTGTTTTTTTTTTGGAATTTTAGAATTTACAGAATTTAGAGAATTTCGAAACTTTCTGACTTTTAAATACTTCTGAAAATTGTTTCTCAGTTTTTCTGTGATTTCCCGAAATTTTTGATGTATTGCATTTTCTAAGAATTTTCACAATGAGTCTCTGAAATCTCTAAAAATTCCAATTTTCCAGGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>303 241 184 112 82 32 17 15 14</canonical_bands>
                <polymorphic_bands>303 241 184 127 82 32 17 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAATTTGTACCAAAGTTTCA</pcr_primer_p1>
		<pcr_primer_p2>CGGTTTCCTGTAATTTTCATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAATTTGTACCAAAGTTTCAATAAATAATATATTTCAGAAAATATTTTTTCGGAGAAGAATTGGTGATTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCG</canonical_amplicon>
		<polymorphic_amplicon>CCAATTTGTACCAAAGTTTCAATAAATAATATATTTCAGAAAATATTTTTYCGGAGAAGAATTGGTGATTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28470</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>805489</contig_pos>
        <strand>+</strand>
        <context>GATTTTAATT[A/G]TTTTTTGTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCGGAGAAGAATTGGTGATTTTATTTCTAAGCCTGAAAGATTTTAATT</left_flank>
        <right_flank>TTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACCCCGGTGTGTCTTCTAGGTAATTTCGAAGTGATGGCCTAACTTTTGCAATTTGAGTTTTCTAGGCCACCATCCCTTTTTGGCTTAGAAATGGCTTGACCTTACCCTGGTGTAGTTTCTAGGTCATTTTTTGTTTTCTAAGTCATTGGGGAGTGGTGGCCAAACTTTTACAAACTTTTGTGGTCACCACGTCAAAATGGCCAAAATACTAATGAACCAACATACGAGTTTTCCTGCTATTTTTGCTATTTTCGGAAACTAAAGTTGTTCCGGAAATGGTCGAGAGGAAAGAGAGATGAAAATTTACAGGTAACCAATTATTTTCAAATCAAATTGAATTTTTCGAAGAAAATTCGTCTTTCAACATACTTTTTTCACTTTGAAAACAGAAAAATCTAAACCAATTTGTACCAAAGTTTCAATAAATAATATATTTCAGAAAATATTTTTTCGGAGAAGAATTGGTGATTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTTTAAAGAAATTTTTTTAAAAATGCTAACCAGTTTTAAAAATCAATTATTGTTTTTTTTTTGGAATTTTAGAATTTACAGAATTTAGAGAATTTCGAAACTTTCTGACTTTTAAATACTTCTGAAAATTGTTTCTCAGTTTTTCTGTGATTTCCCGAAATTTTTGATGTATTGCATTTTCTAAGAATTTTCACAATGAGTCTCTGAAATCTCTAAAAATTCCAATTTTCCAGGAAATCCGTGGCCGAAAACACCAGAATCTTCTCGCGAAATACATTCCTGGAC</canonical>
            <polymorphic>CACCCCGGTGTGTCTTCTAGGTAATTTCGAAGTGATGGCCTAACTTTTGCAATTTGAGTTTTCTAGGCCACCATCCCTTTTTGGCTTAGAAATGGCTTGACCTTACCCTGGTGTAGTTTCTAGGTCATTTTTTGTTTTCTAAGTCATTGGGGAGTGGTGGCCAAACTTTTACAAACTTTTGTGGTCACCACGTCAAAATGGCCAAAATACTAATGAACCAACATACGAGTTTTCCTGCTATTTTTGCTATTTTCGGAAACTAAAGTTGTTCCGGAAATGGTCGAGAGGAAAGAGAGATGAAAATTTACAGGTAACCAATTATTTTCAAATCAAATTGAATTTTTCGAAGAAAATTCGTCTTTCAACATACTTTTTTCACTTTGAAAACAGAAAAATCTAAACCAATTTGTACCAAAGTTTCAATAAATAATATATTTCAGAAAATATTTTTTCGGAGAAGAATTGGTGATTTTATTTCTAAGCCTGAAAGATTTTAATTRTTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTTTAAAGAAATTTTTTTAAAAATGCTAACCAGTTTTAAAAATCAATTATTGTTTTTTTTTTGGAATTTTAGAATTTACAGAATTTAGAGAATTTCGAAACTTTCTGACTTTTAAATACTTCTGAAAATTGTTTCTCAGTTTTTCTGTGATTTCCCGAAATTTTTGATGTATTGCATTTTCTAAGAATTTTCACAATGAGTCTCTGAAATCTCTAAAAATTCCAATTTTCCAGGAAATCCGTGGCCGAAAACACCAGAATCTTCTCGCGAAATACATTCCTGGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTTGTACCAAAGTTTCAATAA</pcr_primer_p1>
		<pcr_primer_p2>CGGTTTCCTGTAATTTTCATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAATTTGTACCAAAGTTTCAATAAATAATATATTTCAGAAAATATTTTTTCGGAGAAGAATTGGTGATTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCG</canonical_amplicon>
		<polymorphic_amplicon>CAATTTGTACCAAAGTTTCAATAAATAATATATTTCAGAAAATATTTTTTCGGAGAAGAATTGGTGATTTTATTTCTAAGCCTGAAAGATTTTAATTRTTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28471</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>805518</contig_pos>
        <strand>+</strand>
        <context>CATGATCGAT[G/T]KCAAGCAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGAT</left_flank>
        <right_flank>TCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTGATGGCCTAACTTTTGCAATTTGAGTTTTCTAGGCCACCATCCCTTTTTGGCTTAGAAATGGCTTGACCTTACCCTGGTGTAGTTTCTAGGTCATTTTTTGTTTTCTAAGTCATTGGGGAGTGGTGGCCAAACTTTTACAAACTTTTGTGGTCACCACGTCAAAATGGCCAAAATACTAATGAACCAACATACGAGTTTTCCTGCTATTTTTGCTATTTTCGGAAACTAAAGTTGTTCCGGAAATGGTCGAGAGGAAAGAGAGATGAAAATTTACAGGTAACCAATTATTTTCAAATCAAATTGAATTTTTCGAAGAAAATTCGTCTTTCAACATACTTTTTTCACTTTGAAAACAGAAAAATCTAAACCAATTTGTACCAAAGTTTCAATAAATAATATATTTCAGAAAATATTTTTTCGGAGAAGAATTGGTGATTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTTTAAAGAAATTTTTTTAAAAATGCTAACCAGTTTTAAAAATCAATTATTGTTTTTTTTTTGGAATTTTAGAATTTACAGAATTTAGAGAATTTCGAAACTTTCTGACTTTTAAATACTTCTGAAAATTGTTTCTCAGTTTTTCTGTGATTTCCCGAAATTTTTGATGTATTGCATTTTCTAAGAATTTTCACAATGAGTCTCTGAAATCTCTAAAAATTCCAATTTTCCAGGAAATCCGTGGCCGAAAACACCAGAATCTTCTCGCGAAATACATTCCTGGACTATTGTATATACCGGTGATTTGATGGAAA</canonical>
            <polymorphic>AAGTGATGGCCTAACTTTTGCAATTTGAGTTTTCTAGGCCACCATCCCTTTTTGGCTTAGAAATGGCTTGACCTTACCCTGGTGTAGTTTCTAGGTCATTTTTTGTTTTCTAAGTCATTGGGGAGTGGTGGCCAAACTTTTACAAACTTTTGTGGTCACCACGTCAAAATGGCCAAAATACTAATGAACCAACATACGAGTTTTCCTGCTATTTTTGCTATTTTCGGAAACTAAAGTTGTTCCGGAAATGGTCGAGAGGAAAGAGAGATGAAAATTTACAGGTAACCAATTATTTTCAAATCAAATTGAATTTTTCGAAGAAAATTCGTCTTTCAACATACTTTTTTCACTTTGAAAACAGAAAAATCTAAACCAATTTGTACCAAAGTTTCAATAAATAATATATTTCAGAAAATATTTTTTCGGAGAAGAATTGGTGATTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATKTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTTTAAAGAAATTTTTTTAAAAATGCTAACCAGTTTTAAAAATCAATTATTGTTTTTTTTTTGGAATTTTAGAATTTACAGAATTTAGAGAATTTCGAAACTTTCTGACTTTTAAATACTTCTGAAAATTGTTTCTCAGTTTTTCTGTGATTTCCCGAAATTTTTGATGTATTGCATTTTCTAAGAATTTTCACAATGAGTCTCTGAAATCTCTAAAAATTCCAATTTTCCAGGAAATCCGTGGCCGAAAACACCAGAATCTTCTCGCGAAATACATTCCTGGACTATTGTATATACCGGTGATTTGATGGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTATTTCTAAGCCTGAAAGATT</pcr_primer_p1>
		<pcr_primer_p2>AAACTCACCAAATGGATTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATKTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28472</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>805519</contig_pos>
        <strand>+</strand>
        <context>ATGATCGATK[G/T]CAAGCAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATG</left_flank>
        <right_flank>CAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGATGGCCTAACTTTTGCAATTTGAGTTTTCTAGGCCACCATCCCTTTTTGGCTTAGAAATGGCTTGACCTTACCCTGGTGTAGTTTCTAGGTCATTTTTTGTTTTCTAAGTCATTGGGGAGTGGTGGCCAAACTTTTACAAACTTTTGTGGTCACCACGTCAAAATGGCCAAAATACTAATGAACCAACATACGAGTTTTCCTGCTATTTTTGCTATTTTCGGAAACTAAAGTTGTTCCGGAAATGGTCGAGAGGAAAGAGAGATGAAAATTTACAGGTAACCAATTATTTTCAAATCAAATTGAATTTTTCGAAGAAAATTCGTCTTTCAACATACTTTTTTCACTTTGAAAACAGAAAAATCTAAACCAATTTGTACCAAAGTTTCAATAAATAATATATTTCAGAAAATATTTTTTCGGAGAAGAATTGGTGATTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTTTAAAGAAATTTTTTTAAAAATGCTAACCAGTTTTAAAAATCAATTATTGTTTTTTTTTTGGAATTTTAGAATTTACAGAATTTAGAGAATTTCGAAACTTTCTGACTTTTAAATACTTCTGAAAATTGTTTCTCAGTTTTTCTGTGATTTCCCGAAATTTTTGATGTATTGCATTTTCTAAGAATTTTCACAATGAGTCTCTGAAATCTCTAAAAATTCCAATTTTCCAGGAAATCCGTGGCCGAAAACACCAGAATCTTCTCGCGAAATACATTCCTGGACTATTGTATATACCGGTGATTTGATGGAAAA</canonical>
            <polymorphic>AGTGATGGCCTAACTTTTGCAATTTGAGTTTTCTAGGCCACCATCCCTTTTTGGCTTAGAAATGGCTTGACCTTACCCTGGTGTAGTTTCTAGGTCATTTTTTGTTTTCTAAGTCATTGGGGAGTGGTGGCCAAACTTTTACAAACTTTTGTGGTCACCACGTCAAAATGGCCAAAATACTAATGAACCAACATACGAGTTTTCCTGCTATTTTTGCTATTTTCGGAAACTAAAGTTGTTCCGGAAATGGTCGAGAGGAAAGAGAGATGAAAATTTACAGGTAACCAATTATTTTCAAATCAAATTGAATTTTTCGAAGAAAATTCGTCTTTCAACATACTTTTTTCACTTTGAAAACAGAAAAATCTAAACCAATTTGTACCAAAGTTTCAATAAATAATATATTTCAGAAAATATTTTTTCGGAGAAGAATTGGTGATTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGKCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTTTAAAGAAATTTTTTTAAAAATGCTAACCAGTTTTAAAAATCAATTATTGTTTTTTTTTTGGAATTTTAGAATTTACAGAATTTAGAGAATTTCGAAACTTTCTGACTTTTAAATACTTCTGAAAATTGTTTCTCAGTTTTTCTGTGATTTCCCGAAATTTTTGATGTATTGCATTTTCTAAGAATTTTCACAATGAGTCTCTGAAATCTCTAAAAATTCCAATTTTCCAGGAAATCCGTGGCCGAAAACACCAGAATCTTCTCGCGAAATACATTCCTGGACTATTGTATATACCGGTGATTTGATGGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTATTTCTAAGCCTGAAAGATT</pcr_primer_p1>
		<pcr_primer_p2>AAACTCACCAAATGGATTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGKCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28473</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>805582</contig_pos>
        <strand>+</strand>
        <context>AACTAATTGT[C/T]TTGCTAGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGT</left_flank>
        <right_flank>TTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTTGACCTTACCCTGGTGTAGTTTCTAGGTCATTTTTTGTTTTCTAAGTCATTGGGGAGTGGTGGCCAAACTTTTACAAACTTTTGTGGTCACCACGTCAAAATGGCCAAAATACTAATGAACCAACATACGAGTTTTCCTGCTATTTTTGCTATTTTCGGAAACTAAAGTTGTTCCGGAAATGGTCGAGAGGAAAGAGAGATGAAAATTTACAGGTAACCAATTATTTTCAAATCAAATTGAATTTTTCGAAGAAAATTCGTCTTTCAACATACTTTTTTCACTTTGAAAACAGAAAAATCTAAACCAATTTGTACCAAAGTTTCAATAAATAATATATTTCAGAAAATATTTTTTCGGAGAAGAATTGGTGATTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTTTAAAGAAATTTTTTTAAAAATGCTAACCAGTTTTAAAAATCAATTATTGTTTTTTTTTTGGAATTTTAGAATTTACAGAATTTAGAGAATTTCGAAACTTTCTGACTTTTAAATACTTCTGAAAATTGTTTCTCAGTTTTTCTGTGATTTCCCGAAATTTTTGATGTATTGCATTTTCTAAGAATTTTCACAATGAGTCTCTGAAATCTCTAAAAATTCCAATTTTCCAGGAAATCCGTGGCCGAAAACACCAGAATCTTCTCGCGAAATACATTCCTGGACTATTGTATATACCGGTGATTTGATGGAAAACGACAGTGAGAGAAGGTAACAAATAATTTTCGAACCATATCAATTTTTTGAGGAAGCTTCATC</canonical>
            <polymorphic>GGCTTGACCTTACCCTGGTGTAGTTTCTAGGTCATTTTTTGTTTTCTAAGTCATTGGGGAGTGGTGGCCAAACTTTTACAAACTTTTGTGGTCACCACGTCAAAATGGCCAAAATACTAATGAACCAACATACGAGTTTTCCTGCTATTTTTGCTATTTTCGGAAACTAAAGTTGTTCCGGAAATGGTCGAGAGGAAAGAGAGATGAAAATTTACAGGTAACCAATTATTTTCAAATCAAATTGAATTTTTCGAAGAAAATTCGTCTTTCAACATACTTTTTTCACTTTGAAAACAGAAAAATCTAAACCAATTTGTACCAAAGTTTCAATAAATAATATATTTCAGAAAATATTTTTTCGGAGAAGAATTGGTGATTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTYTTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTTTAAAGAAATTTTTTTAAAAATGCTAACCAGTTTTAAAAATCAATTATTGTTTTTTTTTTGGAATTTTAGAATTTACAGAATTTAGAGAATTTCGAAACTTTCTGACTTTTAAATACTTCTGAAAATTGTTTCTCAGTTTTTCTGTGATTTCCCGAAATTTTTGATGTATTGCATTTTCTAAGAATTTTCACAATGAGTCTCTGAAATCTCTAAAAATTCCAATTTTCCAGGAAATCCGTGGCCGAAAACACCAGAATCTTCTCGCGAAATACATTCCTGGACTATTGTATATACCGGTGATTTGATGGAAAACGACAGTGAGAGAAGGTAACAAATAATTTTCGAACCATATCAATTTTTTGAGGAAGCTTCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTATTTCTAAGCCTGAAAGATT</pcr_primer_p1>
		<pcr_primer_p2>AAACTCACCAAATGGATTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTYTTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28474</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>805601</contig_pos>
        <strand>+</strand>
        <context>AAAAAATCTC[G/T]ATTACCAWTK</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTC</left_flank>
        <right_flank>ATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAGTTTCTAGGTCATTTTTTGTTTTCTAAGTCATTGGGGAGTGGTGGCCAAACTTTTACAAACTTTTGTGGTCACCACGTCAAAATGGCCAAAATACTAATGAACCAACATACGAGTTTTCCTGCTATTTTTGCTATTTTCGGAAACTAAAGTTGTTCCGGAAATGGTCGAGAGGAAAGAGAGATGAAAATTTACAGGTAACCAATTATTTTCAAATCAAATTGAATTTTTCGAAGAAAATTCGTCTTTCAACATACTTTTTTCACTTTGAAAACAGAAAAATCTAAACCAATTTGTACCAAAGTTTCAATAAATAATATATTTCAGAAAATATTTTTTCGGAGAAGAATTGGTGATTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTTTAAAGAAATTTTTTTAAAAATGCTAACCAGTTTTAAAAATCAATTATTGTTTTTTTTTTGGAATTTTAGAATTTACAGAATTTAGAGAATTTCGAAACTTTCTGACTTTTAAATACTTCTGAAAATTGTTTCTCAGTTTTTCTGTGATTTCCCGAAATTTTTGATGTATTGCATTTTCTAAGAATTTTCACAATGAGTCTCTGAAATCTCTAAAAATTCCAATTTTCCAGGAAATCCGTGGCCGAAAACACCAGAATCTTCTCGCGAAATACATTCCTGGACTATTGTATATACCGGTGATTTGATGGAAAACGACAGTGAGAGAAGGTAACAAATAATTTTCGAACCATATCAATTTTTTGAGGAAGCTTCATCTGTCAAAATATTTTTTCAT</canonical>
            <polymorphic>GTAGTTTCTAGGTCATTTTTTGTTTTCTAAGTCATTGGGGAGTGGTGGCCAAACTTTTACAAACTTTTGTGGTCACCACGTCAAAATGGCCAAAATACTAATGAACCAACATACGAGTTTTCCTGCTATTTTTGCTATTTTCGGAAACTAAAGTTGTTCCGGAAATGGTCGAGAGGAAAGAGAGATGAAAATTTACAGGTAACCAATTATTTTCAAATCAAATTGAATTTTTCGAAGAAAATTCGTCTTTCAACATACTTTTTTCACTTTGAAAACAGAAAAATCTAAACCAATTTGTACCAAAGTTTCAATAAATAATATATTTCAGAAAATATTTTTTCGGAGAAGAATTGGTGATTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCKATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTTTAAAGAAATTTTTTTAAAAATGCTAACCAGTTTTAAAAATCAATTATTGTTTTTTTTTTGGAATTTTAGAATTTACAGAATTTAGAGAATTTCGAAACTTTCTGACTTTTAAATACTTCTGAAAATTGTTTCTCAGTTTTTCTGTGATTTCCCGAAATTTTTGATGTATTGCATTTTCTAAGAATTTTCACAATGAGTCTCTGAAATCTCTAAAAATTCCAATTTTCCAGGAAATCCGTGGCCGAAAACACCAGAATCTTCTCGCGAAATACATTCCTGGACTATTGTATATACCGGTGATTTGATGGAAAACGACAGTGAGAGAAGGTAACAAATAATTTTCGAACCATATCAATTTTTTGAGGAAGCTTCATCTGTCAAAATATTTTTTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTATTTCTAAGCCTGAAAGATT</pcr_primer_p1>
		<pcr_primer_p2>AAACTCACCAAATGGATTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCKATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28475</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>805609</contig_pos>
        <strand>+</strand>
        <context>TCKATTACCA[A/T]TKGATTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCA</left_flank>
        <right_flank>TTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGTCATTTTTTGTTTTCTAAGTCATTGGGGAGTGGTGGCCAAACTTTTACAAACTTTTGTGGTCACCACGTCAAAATGGCCAAAATACTAATGAACCAACATACGAGTTTTCCTGCTATTTTTGCTATTTTCGGAAACTAAAGTTGTTCCGGAAATGGTCGAGAGGAAAGAGAGATGAAAATTTACAGGTAACCAATTATTTTCAAATCAAATTGAATTTTTCGAAGAAAATTCGTCTTTCAACATACTTTTTTCACTTTGAAAACAGAAAAATCTAAACCAATTTGTACCAAAGTTTCAATAAATAATATATTTCAGAAAATATTTTTTCGGAGAAGAATTGGTGATTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTTTAAAGAAATTTTTTTAAAAATGCTAACCAGTTTTAAAAATCAATTATTGTTTTTTTTTTGGAATTTTAGAATTTACAGAATTTAGAGAATTTCGAAACTTTCTGACTTTTAAATACTTCTGAAAATTGTTTCTCAGTTTTTCTGTGATTTCCCGAAATTTTTGATGTATTGCATTTTCTAAGAATTTTCACAATGAGTCTCTGAAATCTCTAAAAATTCCAATTTTCCAGGAAATCCGTGGCCGAAAACACCAGAATCTTCTCGCGAAATACATTCCTGGACTATTGTATATACCGGTGATTTGATGGAAAACGACAGTGAGAGAAGGTAACAAATAATTTTCGAACCATATCAATTTTTTGAGGAAGCTTCATCTGTCAAAATATTTTTTCATTTGCAATT</canonical>
            <polymorphic>TAGGTCATTTTTTGTTTTCTAAGTCATTGGGGAGTGGTGGCCAAACTTTTACAAACTTTTGTGGTCACCACGTCAAAATGGCCAAAATACTAATGAACCAACATACGAGTTTTCCTGCTATTTTTGCTATTTTCGGAAACTAAAGTTGTTCCGGAAATGGTCGAGAGGAAAGAGAGATGAAAATTTACAGGTAACCAATTATTTTCAAATCAAATTGAATTTTTCGAAGAAAATTCGTCTTTCAACATACTTTTTTCACTTTGAAAACAGAAAAATCTAAACCAATTTGTACCAAAGTTTCAATAAATAATATATTTCAGAAAATATTTTTTCGGAGAAGAATTGGTGATTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCAWTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTTTAAAGAAATTTTTTTAAAAATGCTAACCAGTTTTAAAAATCAATTATTGTTTTTTTTTTGGAATTTTAGAATTTACAGAATTTAGAGAATTTCGAAACTTTCTGACTTTTAAATACTTCTGAAAATTGTTTCTCAGTTTTTCTGTGATTTCCCGAAATTTTTGATGTATTGCATTTTCTAAGAATTTTCACAATGAGTCTCTGAAATCTCTAAAAATTCCAATTTTCCAGGAAATCCGTGGCCGAAAACACCAGAATCTTCTCGCGAAATACATTCCTGGACTATTGTATATACCGGTGATTTGATGGAAAACGACAGTGAGAGAAGGTAACAAATAATTTTCGAACCATATCAATTTTTTGAGGAAGCTTCATCTGTCAAAATATTTTTTCATTTGCAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTATTTCTAAGCCTGAAAGATT</pcr_primer_p1>
		<pcr_primer_p2>AAACTCACCAAATGGATTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCAWTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28476</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>805611</contig_pos>
        <strand>+</strand>
        <context>KATTACCAWT[G/T]GATTTTTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATT</left_flank>
        <right_flank>GATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTCATTTTTTGTTTTCTAAGTCATTGGGGAGTGGTGGCCAAACTTTTACAAACTTTTGTGGTCACCACGTCAAAATGGCCAAAATACTAATGAACCAACATACGAGTTTTCCTGCTATTTTTGCTATTTTCGGAAACTAAAGTTGTTCCGGAAATGGTCGAGAGGAAAGAGAGATGAAAATTTACAGGTAACCAATTATTTTCAAATCAAATTGAATTTTTCGAAGAAAATTCGTCTTTCAACATACTTTTTTCACTTTGAAAACAGAAAAATCTAAACCAATTTGTACCAAAGTTTCAATAAATAATATATTTCAGAAAATATTTTTTCGGAGAAGAATTGGTGATTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTTTAAAGAAATTTTTTTAAAAATGCTAACCAGTTTTAAAAATCAATTATTGTTTTTTTTTTGGAATTTTAGAATTTACAGAATTTAGAGAATTTCGAAACTTTCTGACTTTTAAATACTTCTGAAAATTGTTTCTCAGTTTTTCTGTGATTTCCCGAAATTTTTGATGTATTGCATTTTCTAAGAATTTTCACAATGAGTCTCTGAAATCTCTAAAAATTCCAATTTTCCAGGAAATCCGTGGCCGAAAACACCAGAATCTTCTCGCGAAATACATTCCTGGACTATTGTATATACCGGTGATTTGATGGAAAACGACAGTGAGAGAAGGTAACAAATAATTTTCGAACCATATCAATTTTTTGAGGAAGCTTCATCTGTCAAAATATTTTTTCATTTGCAATTCA</canonical>
            <polymorphic>GGTCATTTTTTGTTTTCTAAGTCATTGGGGAGTGGTGGCCAAACTTTTACAAACTTTTGTGGTCACCACGTCAAAATGGCCAAAATACTAATGAACCAACATACGAGTTTTCCTGCTATTTTTGCTATTTTCGGAAACTAAAGTTGTTCCGGAAATGGTCGAGAGGAAAGAGAGATGAAAATTTACAGGTAACCAATTATTTTCAAATCAAATTGAATTTTTCGAAGAAAATTCGTCTTTCAACATACTTTTTTCACTTTGAAAACAGAAAAATCTAAACCAATTTGTACCAAAGTTTCAATAAATAATATATTTCAGAAAATATTTTTTCGGAGAAGAATTGGTGATTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATTKGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTTTAAAGAAATTTTTTTAAAAATGCTAACCAGTTTTAAAAATCAATTATTGTTTTTTTTTTGGAATTTTAGAATTTACAGAATTTAGAGAATTTCGAAACTTTCTGACTTTTAAATACTTCTGAAAATTGTTTCTCAGTTTTTCTGTGATTTCCCGAAATTTTTGATGTATTGCATTTTCTAAGAATTTTCACAATGAGTCTCTGAAATCTCTAAAAATTCCAATTTTCCAGGAAATCCGTGGCCGAAAACACCAGAATCTTCTCGCGAAATACATTCCTGGACTATTGTATATACCGGTGATTTGATGGAAAACGACAGTGAGAGAAGGTAACAAATAATTTTCGAACCATATCAATTTTTTGAGGAAGCTTCATCTGTCAAAATATTTTTTCATTTGCAATTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTATTTCTAAGCCTGAAAGATT</pcr_primer_p1>
		<pcr_primer_p2>AAACTCACCAAATGGATTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATTTGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTATTTCTAAGCCTGAAAGATTTTAATTATTTTTTGTGCAATATGAGCATGATCGATGTCAAGCAAAAAAATTCTAAAAATGCGATTGAAATTCAGAAAAAAAGTTTCGGAAACTAATTGTCTTGCTAGAAAAAAATCTCTATTACCATTKGATTTTTGAATGAAAATTACAGGAAACCGTCGTTGAGAAGATGCCAACAGCTCCAGAAGCTCTTACACTAGAGGTAGAAATCCATTTGGTGAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28477</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>807060</contig_pos>
        <strand>+</strand>
        <context>TCACAAAAAA[A/C]CCAACTTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGAATAGTATTGATATTCATCCGAAACTTTTTAGATTTTTCACAAAAAA</left_flank>
        <right_flank>CCAACTTTTATCAGCAAAATTTATTTCACGAAAATTTTTAAGCCAATTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGCAAATATATCTAACTATGTGGAGGTAAGGTTACAATAGTCGAATGAGTCTACAGTAGCCAGAGAGAATCACGAAAGGCATGTAGAGATAGAGCGTCCTCTGAAAATAAACGTAAAAAGTGATCAATTGACAAAGTATTTCTGATATTATGATGAAGATTTTATCAGTTTATCACTTTTTGATATCTTCTACAGGAAATGAGATGTTTCGGCTCAAAGTTTGGTGTTCATTCTATTGGTATTCACAGAAAAAATCCAAATTTTCAAATTCGAACGAATGAGAATAGTTTTTGTTAGTAGACAAATTCTTGAACTCTTCTTGGTAAAATCATTGGATTTTGGAATTGGAAAAAAACCCGTCATGTTCGGCAGCATTTGTGGTTTTTTTCAATATTTTCTTCTGTTATTTTTTTTTCAAATTGAAATTATGATCAACATAAACCATTTTTGAATAGTATTGATATTCATCCGAAACTTTTTAGATTTTTCACAAAAAATCCAACTTTTATCAGCAAAATTTATTTCACGAAAATTTTTAAGCCAATTATTCCGGTTGCTGACCGGCAACATCTTCTGAAGTTCTCAAATCCACTTGTTGGGCAATTTTTGTTAGACCACCGGCGGCTTCATTTGGTTGCGTGGCTTTTTTGGATTTTCCGAGATAGTTGACGTGTTTTATTGCCTTATATTATTTTATTGTTTTATATTTATTATTGCCACAAAACTCACTGATTGGCGAAAACTGACTGGTCGACGAAAATTATTGTAAAACTTAAATTATAAAATTACCATTTTTCTTGGTTGGCGGCTTGCACTTTCCCTGCTTTTTCTTGCAATGAGCTTTCAGATATAAATGATTTTAAAGACGAAACCGCAAGTTGGACAAGTCACTAAAAATTATTAATTTGAAATGGAACTTCTTATTCAACTCACGATTATTTTCGCAGTTCGAATTTTATTGAAGTTAGACTTGATATTGGAACTGAAATATCATTCAA</canonical>
            <polymorphic>GTGGCAAATATATCTAACTATGTGGAGGTAAGGTTACAATAGTCGAATGAGTCTACAGTAGCCAGAGAGAATCACGAAAGGCATGTAGAGATAGAGCGTCCTCTGAAAATAAACGTAAAAAGTGATCAATTGACAAAGTATTTCTGATATTATGATGAAGATTTTATCAGTTTATCACTTTTTGATATCTTCTACAGGAAATGAGATGTTTCGGCTCAAAGTTTGGTGTTCATTCTATTGGTATTCACAGAAAAAATCCAAATTTTCAAATTCGAACGAATGAGAATAGTTTTTGTTAGTAGACAAATTCTTGAACTCTTCTTGGTAAAATCATTGGATTTTGGAATTGGAAAAAAACCCGTCATGTTCGGCAGCATTTGTGGTTTTTTTCAATATTTTCTTCTGTTATTTTTTTTTCAAATTGAAATTATGATCAACATAAACCATTTTTGAATAGTATTGATATTCATCCGAAACTTTTTAGATTTTTCACAAAAAAMCCAACTTTTATCAGCAAAATTTATTTCACGAAAATTTTTAAGCCAATTATTCCGGTTGCTGACCGGCAACATCTTCTGAAGTTCTCAAATCCACTTGTTGGGCAATTTTTGTTAGACCACCGGCGGCTTCATTTGGTTGCGTGGCTTTTTTGGATTTTCCGAGATAGTTGACGTGTTTTATTGCCTTATATTATTTTATTGTTTTATATTTATTATTGCCACAAAACTCACTGATTGGCGAAAACTGACTGGTCGACGAAAATTATTGTAAAACTTAAATTATAAAATTACCATTTTTCTTGGTTGGCGGCTTGCACTTTCCCTGCTTTTTCTTGCAATGAGCTTTCAGATATAAATGATTTTAAAGACGAAACCGCAAGTTGGACAAGTCACTAAAAATTATTAATTTGAAATGGAACTTCTTATTCAACTCACGATTATTTTCGCAGTTCGAATTTTATTGAAGTTAGACTTGATATTGGAACTGAAATATCATTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAACATAAACCATTTTTGAATAG</pcr_primer_p1>
		<pcr_primer_p2>GCAATAAAACACGTCAACTATCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCAACATAAACCATTTTTGAATAGTATTGATATTCATCCGAAACTTTTTAGATTTTTCACAAAAAATCCAACTTTTATCAGCAAAATTTATTTCACGAAAATTTTTAAGCCAATTATTCCGGTTGCTGACCGGCAACATCTTCTGAAGTTCTCAAATCCACTTGTTGGGCAATTTTTGTTAGACCACCGGCGGCTTCATTTGGTTGCGTGGCTTTTTTGGATTTTCCGAGATAGTTGACGTGTTTTATTGC</canonical_amplicon>
		<polymorphic_amplicon>TCAACATAAACCATTTTTGAATAGTATTGATATTCATCCGAAACTTTTTAGATTTTTCACAAAAAAMCCAACTTTTATCAGCAAAATTTATTTCACGAAAATTTTTAAGCCAATTATTCCGGTTGCTGACCGGCAACATCTTCTGAAGTTCTCAAATCCACTTGTTGGGCAATTTTTGTTAGACCACCGGCGGCTTCATTTGGTTGCGTGGCTTTTTTGGATTTTCCGAGATAGTTGACGTGTTTTATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28478</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>807130</contig_pos>
        <strand>+</strand>
        <context>TGACCGGCAA[A/C]ATCTTCTGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTATTTCACGAAAATTTTTAAGCCAATTATTCCGGTTGCTGACCGGCAA</left_flank>
        <right_flank>ATCTTCTGAAGTTCTCAAATCCACTTGTTGGGCAATTTTTGTTAGACCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCACGAAAGGCATGTAGAGATAGAGCGTCCTCTGAAAATAAACGTAAAAAGTGATCAATTGACAAAGTATTTCTGATATTATGATGAAGATTTTATCAGTTTATCACTTTTTGATATCTTCTACAGGAAATGAGATGTTTCGGCTCAAAGTTTGGTGTTCATTCTATTGGTATTCACAGAAAAAATCCAAATTTTCAAATTCGAACGAATGAGAATAGTTTTTGTTAGTAGACAAATTCTTGAACTCTTCTTGGTAAAATCATTGGATTTTGGAATTGGAAAAAAACCCGTCATGTTCGGCAGCATTTGTGGTTTTTTTCAATATTTTCTTCTGTTATTTTTTTTTCAAATTGAAATTATGATCAACATAAACCATTTTTGAATAGTATTGATATTCATCCGAAACTTTTTAGATTTTTCACAAAAAATCCAACTTTTATCAGCAAAATTTATTTCACGAAAATTTTTAAGCCAATTATTCCGGTTGCTGACCGGCAACATCTTCTGAAGTTCTCAAATCCACTTGTTGGGCAATTTTTGTTAGACCACCGGCGGCTTCATTTGGTTGCGTGGCTTTTTTGGATTTTCCGAGATAGTTGACGTGTTTTATTGCCTTATATTATTTTATTGTTTTATATTTATTATTGCCACAAAACTCACTGATTGGCGAAAACTGACTGGTCGACGAAAATTATTGTAAAACTTAAATTATAAAATTACCATTTTTCTTGGTTGGCGGCTTGCACTTTCCCTGCTTTTTCTTGCAATGAGCTTTCAGATATAAATGATTTTAAAGACGAAACCGCAAGTTGGACAAGTCACTAAAAATTATTAATTTGAAATGGAACTTCTTATTCAACTCACGATTATTTTCGCAGTTCGAATTTTATTGAAGTTAGACTTGATATTGGAACTGAAATATCATTCAAAGAAGTTAAATGACACGAAAGTAACGAATTATTCTAGCAATTAATTTTACACATCGAGTTTGATTTGAGT</canonical>
            <polymorphic>ATCACGAAAGGCATGTAGAGATAGAGCGTCCTCTGAAAATAAACGTAAAAAGTGATCAATTGACAAAGTATTTCTGATATTATGATGAAGATTTTATCAGTTTATCACTTTTTGATATCTTCTACAGGAAATGAGATGTTTCGGCTCAAAGTTTGGTGTTCATTCTATTGGTATTCACAGAAAAAATCCAAATTTTCAAATTCGAACGAATGAGAATAGTTTTTGTTAGTAGACAAATTCTTGAACTCTTCTTGGTAAAATCATTGGATTTTGGAATTGGAAAAAAACCCGTCATGTTCGGCAGCATTTGTGGTTTTTTTCAATATTTTCTTCTGTTATTTTTTTTTCAAATTGAAATTATGATCAACATAAACCATTTTTGAATAGTATTGATATTCATCCGAAACTTTTTAGATTTTTCACAAAAAATCCAACTTTTATCAGCAAAATTTATTTCACGAAAATTTTTAAGCCAATTATTCCGGTTGCTGACCGGCAAMATCTTCTGAAGTTCTCAAATCCACTTGTTGGGCAATTTTTGTTAGACCACCGGCGGCTTCATTTGGTTGCGTGGCTTTTTTGGATTTTCCGAGATAGTTGACGTGTTTTATTGCCTTATATTATTTTATTGTTTTATATTTATTATTGCCACAAAACTCACTGATTGGCGAAAACTGACTGGTCGACGAAAATTATTGTAAAACTTAAATTATAAAATTACCATTTTTCTTGGTTGGCGGCTTGCACTTTCCCTGCTTTTTCTTGCAATGAGCTTTCAGATATAAATGATTTTAAAGACGAAACCGCAAGTTGGACAAGTCACTAAAAATTATTAATTTGAAATGGAACTTCTTATTCAACTCACGATTATTTTCGCAGTTCGAATTTTATTGAAGTTAGACTTGATATTGGAACTGAAATATCATTCAAAGAAGTTAAATGACACGAAAGTAACGAATTATTCTAGCAATTAATTTTACACATCGAGTTTGATTTGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAACATAAACCATTTTTGAATAG</pcr_primer_p1>
		<pcr_primer_p2>GCAATAAAACACGTCAACTATCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCAACATAAACCATTTTTGAATAGTATTGATATTCATCCGAAACTTTTTAGATTTTTCACAAAAAATCCAACTTTTATCAGCAAAATTTATTTCACGAAAATTTTTAAGCCAATTATTCCGGTTGCTGACCGGCAACATCTTCTGAAGTTCTCAAATCCACTTGTTGGGCAATTTTTGTTAGACCACCGGCGGCTTCATTTGGTTGCGTGGCTTTTTTGGATTTTCCGAGATAGTTGACGTGTTTTATTGC</canonical_amplicon>
		<polymorphic_amplicon>TCAACATAAACCATTTTTGAATAGTATTGATATTCATCCGAAACTTTTTAGATTTTTCACAAAAAATCCAACTTTTATCAGCAAAATTTATTTCACGAAAATTTTTAAGCCAATTATTCCGGTTGCTGACCGGCAAMATCTTCTGAAGTTCTCAAATCCACTTGTTGGGCAATTTTTGTTAGACCACCGGCGGCTTCATTTGGTTGCGTGGCTTTTTTGGATTTTCCGAGATAGTTGACGTGTTTTATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28479</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>807156</contig_pos>
        <strand>+</strand>
        <context>CAAATCCACT[C/T]GTTGGGCAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTATTCCGGTTGCTGACCGGCAACATCTTCTGAAGTTCTCAAATCCACT</left_flank>
        <right_flank>GTTGGGCAATTTTTGTTAGACCACCGGCGGCTTCATTTGGTTGCGTGGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTCCTCTGAAAATAAACGTAAAAAGTGATCAATTGACAAAGTATTTCTGATATTATGATGAAGATTTTATCAGTTTATCACTTTTTGATATCTTCTACAGGAAATGAGATGTTTCGGCTCAAAGTTTGGTGTTCATTCTATTGGTATTCACAGAAAAAATCCAAATTTTCAAATTCGAACGAATGAGAATAGTTTTTGTTAGTAGACAAATTCTTGAACTCTTCTTGGTAAAATCATTGGATTTTGGAATTGGAAAAAAACCCGTCATGTTCGGCAGCATTTGTGGTTTTTTTCAATATTTTCTTCTGTTATTTTTTTTTCAAATTGAAATTATGATCAACATAAACCATTTTTGAATAGTATTGATATTCATCCGAAACTTTTTAGATTTTTCACAAAAAATCCAACTTTTATCAGCAAAATTTATTTCACGAAAATTTTTAAGCCAATTATTCCGGTTGCTGACCGGCAACATCTTCTGAAGTTCTCAAATCCACTTGTTGGGCAATTTTTGTTAGACCACCGGCGGCTTCATTTGGTTGCGTGGCTTTTTTGGATTTTCCGAGATAGTTGACGTGTTTTATTGCCTTATATTATTTTATTGTTTTATATTTATTATTGCCACAAAACTCACTGATTGGCGAAAACTGACTGGTCGACGAAAATTATTGTAAAACTTAAATTATAAAATTACCATTTTTCTTGGTTGGCGGCTTGCACTTTCCCTGCTTTTTCTTGCAATGAGCTTTCAGATATAAATGATTTTAAAGACGAAACCGCAAGTTGGACAAGTCACTAAAAATTATTAATTTGAAATGGAACTTCTTATTCAACTCACGATTATTTTCGCAGTTCGAATTTTATTGAAGTTAGACTTGATATTGGAACTGAAATATCATTCAAAGAAGTTAAATGACACGAAAGTAACGAATTATTCTAGCAATTAATTTTACACATCGAGTTTGATTTGAGTGGTTCTAGAAAACGGTCGATCCCAAA</canonical>
            <polymorphic>CGTCCTCTGAAAATAAACGTAAAAAGTGATCAATTGACAAAGTATTTCTGATATTATGATGAAGATTTTATCAGTTTATCACTTTTTGATATCTTCTACAGGAAATGAGATGTTTCGGCTCAAAGTTTGGTGTTCATTCTATTGGTATTCACAGAAAAAATCCAAATTTTCAAATTCGAACGAATGAGAATAGTTTTTGTTAGTAGACAAATTCTTGAACTCTTCTTGGTAAAATCATTGGATTTTGGAATTGGAAAAAAACCCGTCATGTTCGGCAGCATTTGTGGTTTTTTTCAATATTTTCTTCTGTTATTTTTTTTTCAAATTGAAATTATGATCAACATAAACCATTTTTGAATAGTATTGATATTCATCCGAAACTTTTTAGATTTTTCACAAAAAATCCAACTTTTATCAGCAAAATTTATTTCACGAAAATTTTTAAGCCAATTATTCCGGTTGCTGACCGGCAACATCTTCTGAAGTTCTCAAATCCACTYGTTGGGCAATTTTTGTTAGACCACCGGCGGCTTCATTTGGTTGCGTGGCTTTTTTGGATTTTCCGAGATAGTTGACGTGTTTTATTGCCTTATATTATTTTATTGTTTTATATTTATTATTGCCACAAAACTCACTGATTGGCGAAAACTGACTGGTCGACGAAAATTATTGTAAAACTTAAATTATAAAATTACCATTTTTCTTGGTTGGCGGCTTGCACTTTCCCTGCTTTTTCTTGCAATGAGCTTTCAGATATAAATGATTTTAAAGACGAAACCGCAAGTTGGACAAGTCACTAAAAATTATTAATTTGAAATGGAACTTCTTATTCAACTCACGATTATTTTCGCAGTTCGAATTTTATTGAAGTTAGACTTGATATTGGAACTGAAATATCATTCAAAGAAGTTAAATGACACGAAAGTAACGAATTATTCTAGCAATTAATTTTACACATCGAGTTTGATTTGAGTGGTTCTAGAAAACGGTCGATCCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAACATAAACCATTTTTGAATAG</pcr_primer_p1>
		<pcr_primer_p2>GCAATAAAACACGTCAACTATCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCAACATAAACCATTTTTGAATAGTATTGATATTCATCCGAAACTTTTTAGATTTTTCACAAAAAATCCAACTTTTATCAGCAAAATTTATTTCACGAAAATTTTTAAGCCAATTATTCCGGTTGCTGACCGGCAACATCTTCTGAAGTTCTCAAATCCACTTGTTGGGCAATTTTTGTTAGACCACCGGCGGCTTCATTTGGTTGCGTGGCTTTTTTGGATTTTCCGAGATAGTTGACGTGTTTTATTGC</canonical_amplicon>
		<polymorphic_amplicon>TCAACATAAACCATTTTTGAATAGTATTGATATTCATCCGAAACTTTTTAGATTTTTCACAAAAAATCCAACTTTTATCAGCAAAATTTATTTCACGAAAATTTTTAAGCCAATTATTCCGGTTGCTGACCGGCAACATCTTCTGAAGTTCTCAAATCCACTYGTTGGGCAATTTTTGTTAGACCACCGGCGGCTTCATTTGGTTGCGTGGCTTTTTTGGATTTTCCGAGATAGTTGACGTGTTTTATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28480</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>809094</contig_pos>
        <strand></strand>
        <context>acaggtttta[C/T]ggtKAAAAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAAGAAGAGCTTTTTCATAATTGAAAGGCCCTTCTATTACAGGTTTTA</left_flank>
        <right_flank>GGTGAAAAGGGTAAAACTCACGGTTCCAGCTTTTCTAGCTTCTTATTGAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACTGAATTCCAATGATTTTCGAATGAGATTTTGAAAAAAAATTTCACAAATCGTTAATGCATAACCTACCGGGTTATTCCCTTTGTTTTCCTCCGGTTTAGAAAGGGCAGTCCTTCTCTCATATTTAGACATTCTGGCCAGAATTCCAGCAACCTCCAACGTTTTCTTGTGATGAGTGTTAATGTGCTTGAACGTTCCCGCTTAAGTCCAAAACTTTTTTGCACAAAGAGCACTTTGCTGCAAATTTCTCAAGTTAAAAAAAGCGCCAAATATCGTTACTTAGACTTTGAGCTCAATTATCTCTGTTCCTATAAGAGTTATCAAAAATGTGTCGACTGATGAAATAATGATGATAATATTTTAGAAAATTTTTTGCAACAACTATTTGATATCTGTGACAGGAACCAAGATAAGTTGGCTCGAAGTTGGCTGACGAAGAAAAAAAAATAAAAGAAGAGCTTTTTCATAATTGAAAGGCCCTTCTATTACAGGTTTTACGGTGAAAAGGGTAAAACTCACGGTTCCAGCTTTTCTAGCTTCTTATTGATGTCCTGATGATGTTTTTTTCTTTGATTTTTCAAAATTCTTTTTTGGTTGGCAATGTCTTCAGGGGTGAGTGTCATGGTGAGTTCTGATGAGGACTGATTCTTGATTGGCCATCAGATGACGTGGAAAAAAAGGACGGAGTTTTCAAATTACCGTGAAACTTAAATTATGAAATTACAATTCTTCTCGGTTGGCAGTTTACATTTTTATAACTATTTCAAAAATGTATCTCCAATTATTTCGATTGAGATTTTTTTTGTTTGAATTTATAATAAACACTTGTAAATAATCAAGTTCAAACACTTTCAGAAACGGCACAGAGTTAATTTGAAGAAAAAAAACAGAGATTTTCAGCCTCATCCAACAAAAATAGTAATTTTTTGGCATTTGTGAAATTGAAGAAGTACTCACCTTCTTCAGAATAAATGCTCATTGGCAATGAATATTAGTAA</canonical>
            <polymorphic>CAACTGAATTCCAATGATTTTCGAATGAGATTTTGAAAAAAAATTTCACAAATCGTTAATGCATAACCTACCGGGTTATTCCCTTTGTTTTCCTCCGGTTTAGAAAGGGCAGTCCTTCTCTCATATTTAGACATTCTGGCCAGAATTCCAGCAACCTCCAACGTTTTCTTGTGATGAGTGTTAATGTGCTTGAACGTTCCCGCTTAAGTCCAAAACTTTTTTGCACAAAGAGCACTTTGCTGCAAATTTCTCAAGTTAAAAAAAGCGCCAAATATCGTTACTTAGACTTTGAGCTCAATTATCTCTGTTCCTATAAGAGTTATCAAAAATGTGTCGACTGATGAAATAATGATGATAATATTTTAGAAAATTTTTTGCAACAACTATTTGATATCTGTGACAGGAACCAAGATAAGTTGGCTCGAAGTTGGCTGACGAAGAAAAAAAAATAAAAGAAGAGCTTTTTCATAATTGAAAGGCCCTTCTATTACAGGTTTTAYGGTGAAAAGGGTAAAACTCACGGTTCCAGCTTTTCTAGCTTCTTATTGATGTCCTGATGATGTTTTTTTCTTTGATTTTTCAAAATTCTTTTTTGGTTGGCAATGTCTTCAGGGGTGAGTGTCATGGTGAGTTCTGATGAGGACTGATTCTTGATTGGCCATCAGATGACGTGGAAAAAAAGGACGGAGTTTTCAAATTACCGTGAAACTTAAATTATGAAATTACAATTCTTCTCGGTTGGCAGTTTACATTTTTATAACTATTTCAAAAATGTATCTCCAATTATTTCGATTGAGATTTTTTTTGTTTGAATTTATAATAAACACTTGTAAATAATCAAGTTCAAACACTTTCAGAAACGGCACAGAGTTAATTTGAAGAAAAAAAACAGAGATTTTCAGCCTCATCCAACAAAAATAGTAATTTTTTGGCATTTGTGAAATTGAAGAAGTACTCACCTTCTTCAGAATAAATGCTCATTGGCAATGAATATTAGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 298 180 21</canonical_bands>
                <polymorphic_bands>522 298 180</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCTGCAAATTTCTCAAGTT</pcr_primer_p1>
		<pcr_primer_p2>AACATCATCAGGACATCAATAAG</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>TGCTGCAAATTTCTCAAGTTAAAAAAAGCGCCAAATATCGTTACTTAGACTTTGAGCTCAATTATCTCTGTTCCTATAAGAGTTATCAAAAATGTGTCGACTGATGAAATAATGATGATAATATTTTAGAAAATTTTTTGCAACAACTATTTGATATCTGTGACAGGAACCAAGATAAGTTGGCTCGAAGTTGGCTGACGAAGAAAAAAAAATAAAAGAAGAGCTTTTTCATAATTGAAAGGCCCTTCTATTACAGGTTTTACGGTGAAAAGGGTAAAACTCACGGTTCCAGCTTTTCTAGCTTCTTATTGATGTCCTGATGATGTT</canonical_amplicon>
		<polymorphic_amplicon>TGCTGCAAATTTCTCAAGTTAAAAAAAGCGCCAAATATCGTTACTTAGACTTTGAGCTCAATTATCTCTGTTCCTATAAGAGTTATCAAAAATGTGTCGACTGATGAAATAATGATGATAATATTTTAGAAAATTTTTTGCAACAACTATTTGATATCTGTGACAGGAACCAAGATAAGTTGGCTCGAAGTTGGCTGACGAAGAAAAAAAAATAAAAGAAGAGCTTTTTCATAATTGAAAGGCCCTTCTATTACAGGTTTTAYGGTGAAAAGGGTAAAACTCACGGTTCCAGCTTTTCTAGCTTCTTATTGATGTCCTGATGATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28481</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>809098</contig_pos>
        <strand></strand>
        <context>gttttayggt[G/T]AAAAGGGTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGAAGAGCTTTTTCATAATTGAAAGGCCCTTCTATTACAGGTTTTACGGT</left_flank>
        <right_flank>AAAAGGGTAAAACTCACGGTTCCAGCTTTTCTAGCTTCTTATTGATGTCC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAATTCCAATGATTTTCGAATGAGATTTTGAAAAAAAATTTCACAAATCGTTAATGCATAACCTACCGGGTTATTCCCTTTGTTTTCCTCCGGTTTAGAAAGGGCAGTCCTTCTCTCATATTTAGACATTCTGGCCAGAATTCCAGCAACCTCCAACGTTTTCTTGTGATGAGTGTTAATGTGCTTGAACGTTCCCGCTTAAGTCCAAAACTTTTTTGCACAAAGAGCACTTTGCTGCAAATTTCTCAAGTTAAAAAAAGCGCCAAATATCGTTACTTAGACTTTGAGCTCAATTATCTCTGTTCCTATAAGAGTTATCAAAAATGTGTCGACTGATGAAATAATGATGATAATATTTTAGAAAATTTTTTGCAACAACTATTTGATATCTGTGACAGGAACCAAGATAAGTTGGCTCGAAGTTGGCTGACGAAGAAAAAAAAATAAAAGAAGAGCTTTTTCATAATTGAAAGGCCCTTCTATTACAGGTTTTACGGTGAAAAGGGTAAAACTCACGGTTCCAGCTTTTCTAGCTTCTTATTGATGTCCTGATGATGTTTTTTTCTTTGATTTTTCAAAATTCTTTTTTGGTTGGCAATGTCTTCAGGGGTGAGTGTCATGGTGAGTTCTGATGAGGACTGATTCTTGATTGGCCATCAGATGACGTGGAAAAAAAGGACGGAGTTTTCAAATTACCGTGAAACTTAAATTATGAAATTACAATTCTTCTCGGTTGGCAGTTTACATTTTTATAACTATTTCAAAAATGTATCTCCAATTATTTCGATTGAGATTTTTTTTGTTTGAATTTATAATAAACACTTGTAAATAATCAAGTTCAAACACTTTCAGAAACGGCACAGAGTTAATTTGAAGAAAAAAAACAGAGATTTTCAGCCTCATCCAACAAAAATAGTAATTTTTTGGCATTTGTGAAATTGAAGAAGTACTCACCTTCTTCAGAATAAATGCTCATTGGCAATGAATATTAGTAAATCT</canonical>
            <polymorphic>TGAATTCCAATGATTTTCGAATGAGATTTTGAAAAAAAATTTCACAAATCGTTAATGCATAACCTACCGGGTTATTCCCTTTGTTTTCCTCCGGTTTAGAAAGGGCAGTCCTTCTCTCATATTTAGACATTCTGGCCAGAATTCCAGCAACCTCCAACGTTTTCTTGTGATGAGTGTTAATGTGCTTGAACGTTCCCGCTTAAGTCCAAAACTTTTTTGCACAAAGAGCACTTTGCTGCAAATTTCTCAAGTTAAAAAAAGCGCCAAATATCGTTACTTAGACTTTGAGCTCAATTATCTCTGTTCCTATAAGAGTTATCAAAAATGTGTCGACTGATGAAATAATGATGATAATATTTTAGAAAATTTTTTGCAACAACTATTTGATATCTGTGACAGGAACCAAGATAAGTTGGCTCGAAGTTGGCTGACGAAGAAAAAAAAATAAAAGAAGAGCTTTTTCATAATTGAAAGGCCCTTCTATTACAGGTTTTACGGTKAAAAGGGTAAAACTCACGGTTCCAGCTTTTCTAGCTTCTTATTGATGTCCTGATGATGTTTTTTTCTTTGATTTTTCAAAATTCTTTTTTGGTTGGCAATGTCTTCAGGGGTGAGTGTCATGGTGAGTTCTGATGAGGACTGATTCTTGATTGGCCATCAGATGACGTGGAAAAAAAGGACGGAGTTTTCAAATTACCGTGAAACTTAAATTATGAAATTACAATTCTTCTCGGTTGGCAGTTTACATTTTTATAACTATTTCAAAAATGTATCTCCAATTATTTCGATTGAGATTTTTTTTGTTTGAATTTATAATAAACACTTGTAAATAATCAAGTTCAAACACTTTCAGAAACGGCACAGAGTTAATTTGAAGAAAAAAAACAGAGATTTTCAGCCTCATCCAACAAAAATAGTAATTTTTTGGCATTTGTGAAATTGAAGAAGTACTCACCTTCTTCAGAATAAATGCTCATTGGCAATGAATATTAGTAAATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>125 121 105 99 97 75 66 46 44 44 37 32 24 18 16 15 9 8 8 7 4</canonical_bands>
                <polymorphic_bands>125 121 121 99 97 75 66 46 44 44 37 32 24 18 15 9 8 8 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCTGCAAATTTCTCAAGTT</pcr_primer_p1>
		<pcr_primer_p2>AACATCATCAGGACATCAATAAG</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>TGCTGCAAATTTCTCAAGTTAAAAAAAGCGCCAAATATCGTTACTTAGACTTTGAGCTCAATTATCTCTGTTCCTATAAGAGTTATCAAAAATGTGTCGACTGATGAAATAATGATGATAATATTTTAGAAAATTTTTTGCAACAACTATTTGATATCTGTGACAGGAACCAAGATAAGTTGGCTCGAAGTTGGCTGACGAAGAAAAAAAAATAAAAGAAGAGCTTTTTCATAATTGAAAGGCCCTTCTATTACAGGTTTTACGGTGAAAAGGGTAAAACTCACGGTTCCAGCTTTTCTAGCTTCTTATTGATGTCCTGATGATGTT</canonical_amplicon>
		<polymorphic_amplicon>TGCTGCAAATTTCTCAAGTTAAAAAAAGCGCCAAATATCGTTACTTAGACTTTGAGCTCAATTATCTCTGTTCCTATAAGAGTTATCAAAAATGTGTCGACTGATGAAATAATGATGATAATATTTTAGAAAATTTTTTGCAACAACTATTTGATATCTGTGACAGGAACCAAGATAAGTTGGCTCGAAGTTGGCTGACGAAGAAAAAAAAATAAAAGAAGAGCTTTTTCATAATTGAAAGGCCCTTCTATTACAGGTTTTACGGTKAAAAGGGTAAAACTCACGGTTCCAGCTTTTCTAGCTTCTTATTGATGTCCTGATGATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28482</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>809135</contig_pos>
        <strand></strand>
        <context>TTTTCTAGCT[T/C]CTTATTGATG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAGGTTTTACGGTGAAAAGGGTAAAACTCACGGTTCCAGCTTTTCTAGCT</left_flank>
        <right_flank>CTTATTGATGTCCTGATGATGTTTTTTTCTTTGATTTTTCAAAATTCTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTCACAAATCGTTAATGCATAACCTACCGGGTTATTCCCTTTGTTTTCCTCCGGTTTAGAAAGGGCAGTCCTTCTCTCATATTTAGACATTCTGGCCAGAATTCCAGCAACCTCCAACGTTTTCTTGTGATGAGTGTTAATGTGCTTGAACGTTCCCGCTTAAGTCCAAAACTTTTTTGCACAAAGAGCACTTTGCTGCAAATTTCTCAAGTTAAAAAAAGCGCCAAATATCGTTACTTAGACTTTGAGCTCAATTATCTCTGTTCCTATAAGAGTTATCAAAAATGTGTCGACTGATGAAATAATGATGATAATATTTTAGAAAATTTTTTGCAACAACTATTTGATATCTGTGACAGGAACCAAGATAAGTTGGCTCGAAGTTGGCTGACGAAGAAAAAAAAATAAAAGAAGAGCTTTTTCATAATTGAAAGGCCCTTCTATTACAGGTTTTACGGTGAAAAGGGTAAAACTCACGGTTCCAGCTTTTCTAGCTTCTTATTGATGTCCTGATGATGTTTTTTTCTTTGATTTTTCAAAATTCTTTTTTGGTTGGCAATGTCTTCAGGGGTGAGTGTCATGGTGAGTTCTGATGAGGACTGATTCTTGATTGGCCATCAGATGACGTGGAAAAAAAGGACGGAGTTTTCAAATTACCGTGAAACTTAAATTATGAAATTACAATTCTTCTCGGTTGGCAGTTTACATTTTTATAACTATTTCAAAAATGTATCTCCAATTATTTCGATTGAGATTTTTTTTGTTTGAATTTATAATAAACACTTGTAAATAATCAAGTTCAAACACTTTCAGAAACGGCACAGAGTTAATTTGAAGAAAAAAAACAGAGATTTTCAGCCTCATCCAACAAAAATAGTAATTTTTTGGCATTTGTGAAATTGAAGAAGTACTCACCTTCTTCAGAATAAATGCTCATTGGCAATGAATATTAGTAAATCTTTCCTCTCGAAGGACTTAGAGAAAAAAATATGAATGT</canonical>
            <polymorphic>AATTTCACAAATCGTTAATGCATAACCTACCGGGTTATTCCCTTTGTTTTCCTCCGGTTTAGAAAGGGCAGTCCTTCTCTCATATTTAGACATTCTGGCCAGAATTCCAGCAACCTCCAACGTTTTCTTGTGATGAGTGTTAATGTGCTTGAACGTTCCCGCTTAAGTCCAAAACTTTTTTGCACAAAGAGCACTTTGCTGCAAATTTCTCAAGTTAAAAAAAGCGCCAAATATCGTTACTTAGACTTTGAGCTCAATTATCTCTGTTCCTATAAGAGTTATCAAAAATGTGTCGACTGATGAAATAATGATGATAATATTTTAGAAAATTTTTTGCAACAACTATTTGATATCTGTGACAGGAACCAAGATAAGTTGGCTCGAAGTTGGCTGACGAAGAAAAAAAAATAAAAGAAGAGCTTTTTCATAATTGAAAGGCCCTTCTATTACAGGTTTTACGGTGAAAAGGGTAAAACTCACGGTTCCAGCTTTTCTAGCTYCTTATTGATGTCCTGATGATGTTTTTTTCTTTGATTTTTCAAAATTCTTTTTTGGTTGGCAATGTCTTCAGGGGTGAGTGTCATGGTGAGTTCTGATGAGGACTGATTCTTGATTGGCCATCAGATGACGTGGAAAAAAAGGACGGAGTTTTCAAATTACCGTGAAACTTAAATTATGAAATTACAATTCTTCTCGGTTGGCAGTTTACATTTTTATAACTATTTCAAAAATGTATCTCCAATTATTTCGATTGAGATTTTTTTTGTTTGAATTTATAATAAACACTTGTAAATAATCAAGTTCAAACACTTTCAGAAACGGCACAGAGTTAATTTGAAGAAAAAAAACAGAGATTTTCAGCCTCATCCAACAAAAATAGTAATTTTTTGGCATTTGTGAAATTGAAGAAGTACTCACCTTCTTCAGAATAAATGCTCATTGGCAATGAATATTAGTAAATCTTTCCTCTCGAAGGACTTAGAGAAAAAAATATGAATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTGCAAATTTCTCAAGTT</pcr_primer_p1>
		<pcr_primer_p2>AACTCACCATGACACTCACC</pcr_primer_p2>
		<pcr_amplicon_size>396</pcr_amplicon_size>
		<canonical_amplicon>TGCTGCAAATTTCTCAAGTTAAAAAAAGCGCCAAATATCGTTACTTAGACTTTGAGCTCAATTATCTCTGTTCCTATAAGAGTTATCAAAAATGTGTCGACTGATGAAATAATGATGATAATATTTTAGAAAATTTTTTGCAACAACTATTTGATATCTGTGACAGGAACCAAGATAAGTTGGCTCGAAGTTGGCTGACGAAGAAAAAAAAATAAAAGAAGAGCTTTTTCATAATTGAAAGGCCCTTCTATTACAGGTTTTACGGTGAAAAGGGTAAAACTCACGGTTCCAGCTTTTCTAGCTTCTTATTGATGTCCTGATGATGTTTTTTTCTTTGATTTTTCAAAATTCTTTTTTGGTTGGCAATGTCTTCAGGGGTGAGTGTCATGGTGAGTT</canonical_amplicon>
		<polymorphic_amplicon>TGCTGCAAATTTCTCAAGTTAAAAAAAGCGCCAAATATCGTTACTTAGACTTTGAGCTCAATTATCTCTGTTCCTATAAGAGTTATCAAAAATGTGTCGACTGATGAAATAATGATGATAATATTTTAGAAAATTTTTTGCAACAACTATTTGATATCTGTGACAGGAACCAAGATAAGTTGGCTCGAAGTTGGCTGACGAAGAAAAAAAAATAAAAGAAGAGCTTTTTCATAATTGAAAGGCCCTTCTATTACAGGTTTTACGGTGAAAAGGGTAAAACTCACGGTTCCAGCTTTTCTAGCTYCTTATTGATGTCCTGATGATGTTTTTTTCTTTGATTTTTCAAAATTCTTTTTTGGTTGGCAATGTCTTCAGGGGTGAGTGTCATGGTGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28483</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>809275</contig_pos>
        <strand></strand>
        <context>GTGGAAAAAA[A/G]GGRCGGAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTCTGATGAGGACTGATTCTTGATTGGCCATCAGATGACGTGGAAAAAA</left_flank>
        <right_flank>GGACGGAGTTTTCAAATTACCGTGAAACTTAAATTATGAAATTACAATTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATGTGCTTGAACGTTCCCGCTTAAGTCCAAAACTTTTTTGCACAAAGAGCACTTTGCTGCAAATTTCTCAAGTTAAAAAAAGCGCCAAATATCGTTACTTAGACTTTGAGCTCAATTATCTCTGTTCCTATAAGAGTTATCAAAAATGTGTCGACTGATGAAATAATGATGATAATATTTTAGAAAATTTTTTGCAACAACTATTTGATATCTGTGACAGGAACCAAGATAAGTTGGCTCGAAGTTGGCTGACGAAGAAAAAAAAATAAAAGAAGAGCTTTTTCATAATTGAAAGGCCCTTCTATTACAGGTTTTACGGTGAAAAGGGTAAAACTCACGGTTCCAGCTTTTCTAGCTTCTTATTGATGTCCTGATGATGTTTTTTTCTTTGATTTTTCAAAATTCTTTTTTGGTTGGCAATGTCTTCAGGGGTGAGTGTCATGGTGAGTTCTGATGAGGACTGATTCTTGATTGGCCATCAGATGACGTGGAAAAAAAGGACGGAGTTTTCAAATTACCGTGAAACTTAAATTATGAAATTACAATTCTTCTCGGTTGGCAGTTTACATTTTTATAACTATTTCAAAAATGTATCTCCAATTATTTCGATTGAGATTTTTTTTGTTTGAATTTATAATAAACACTTGTAAATAATCAAGTTCAAACACTTTCAGAAACGGCACAGAGTTAATTTGAAGAAAAAAAACAGAGATTTTCAGCCTCATCCAACAAAAATAGTAATTTTTTGGCATTTGTGAAATTGAAGAAGTACTCACCTTCTTCAGAATAAATGCTCATTGGCAATGAATATTAGTAAATCTTTCCTCTCGAAGGACTTAGAGAAAAAAATATGAATGTAATAGGAGATAGTGAACAATCAGGAAAATCAAGACGAGAGAAAATCTCCAAAATCCATTCATTTCTAGGATTATTGGAGAGCTCTCGAGAATATGTTAGACGGCTATTCAGTCAAGTCGTCATGAGGAGAGAATAAATGC</canonical>
            <polymorphic>TAATGTGCTTGAACGTTCCCGCTTAAGTCCAAAACTTTTTTGCACAAAGAGCACTTTGCTGCAAATTTCTCAAGTTAAAAAAAGCGCCAAATATCGTTACTTAGACTTTGAGCTCAATTATCTCTGTTCCTATAAGAGTTATCAAAAATGTGTCGACTGATGAAATAATGATGATAATATTTTAGAAAATTTTTTGCAACAACTATTTGATATCTGTGACAGGAACCAAGATAAGTTGGCTCGAAGTTGGCTGACGAAGAAAAAAAAATAAAAGAAGAGCTTTTTCATAATTGAAAGGCCCTTCTATTACAGGTTTTACGGTGAAAAGGGTAAAACTCACGGTTCCAGCTTTTCTAGCTTCTTATTGATGTCCTGATGATGTTTTTTTCTTTGATTTTTCAAAATTCTTTTTTGGTTGGCAATGTCTTCAGGGGTGAGTGTCATGGTGAGTTCTGATGAGGACTGATTCTTGATTGGCCATCAGATGACGTGGAAAAAARGGACGGAGTTTTCAAATTACCGTGAAACTTAAATTATGAAATTACAATTCTTCTCGGTTGGCAGTTTACATTTTTATAACTATTTCAAAAATGTATCTCCAATTATTTCGATTGAGATTTTTTTTGTTTGAATTTATAATAAACACTTGTAAATAATCAAGTTCAAACACTTTCAGAAACGGCACAGAGTTAATTTGAAGAAAAAAAACAGAGATTTTCAGCCTCATCCAACAAAAATAGTAATTTTTTGGCATTTGTGAAATTGAAGAAGTACTCACCTTCTTCAGAATAAATGCTCATTGGCAATGAATATTAGTAAATCTTTCCTCTCGAAGGACTTAGAGAAAAAAATATGAATGTAATAGGAGATAGTGAACAATCAGGAAAATCAAGACGAGAGAAAATCTCCAAAATCCATTCATTTCTAGGATTATTGGAGAGCTCTCGAGAATATGTTAGACGGCTATTCAGTCAAGTCGTCATGAGGAGAGAATAAATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTATTGATGTCCTGATGATGTT</pcr_primer_p1>
		<pcr_primer_p2>CGAAATAATTGGAGATACATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTATTGATGTCCTGATGATGTTTTTTTCTTTGATTTTTCAAAATTCTTTTTTGGTTGGCAATGTCTTCAGGGGTGAGTGTCATGGTGAGTTCTGATGAGGACTGATTCTTGATTGGCCATCAGATGACGTGGAAAAAAAGGACGGAGTTTTCAAATTACCGTGAAACTTAAATTATGAAATTACAATTCTTCTCGGTTGGCAGTTTACATTTTTATAACTATTTCAAAAATGTATCTCCAATTATTTCG</canonical_amplicon>
		<polymorphic_amplicon>CTTATTGATGTCCTGATGATGTTTTTTTCTTTGATTTTTCAAAATTCTTTTTTGGTTGGCAATGTCTTCAGGGGTGAGTGTCATGGTGAGTTCTGATGAGGACTGATTCTTGATTGGCCATCAGATGACGTGGAAAAAARGGACGGAGTTTTCAAATTACCGTGAAACTTAAATTATGAAATTACAATTCTTCTCGGTTGGCAGTTTACATTTTTATAACTATTTCAAAAATGTATCTCCAATTATTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28484</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>809278</contig_pos>
        <strand></strand>
        <context>GAAAAAARGG[A/G]CGGAGTTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGATGAGGACTGATTCTTGATTGGCCATCAGATGACGTGGAAAAAAAGG</left_flank>
        <right_flank>CGGAGTTTTCAAATTACCGTGAAACTTAAATTATGAAATTACAATTCTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGCTTGAACGTTCCCGCTTAAGTCCAAAACTTTTTTGCACAAAGAGCACTTTGCTGCAAATTTCTCAAGTTAAAAAAAGCGCCAAATATCGTTACTTAGACTTTGAGCTCAATTATCTCTGTTCCTATAAGAGTTATCAAAAATGTGTCGACTGATGAAATAATGATGATAATATTTTAGAAAATTTTTTGCAACAACTATTTGATATCTGTGACAGGAACCAAGATAAGTTGGCTCGAAGTTGGCTGACGAAGAAAAAAAAATAAAAGAAGAGCTTTTTCATAATTGAAAGGCCCTTCTATTACAGGTTTTACGGTGAAAAGGGTAAAACTCACGGTTCCAGCTTTTCTAGCTTCTTATTGATGTCCTGATGATGTTTTTTTCTTTGATTTTTCAAAATTCTTTTTTGGTTGGCAATGTCTTCAGGGGTGAGTGTCATGGTGAGTTCTGATGAGGACTGATTCTTGATTGGCCATCAGATGACGTGGAAAAAAAGGACGGAGTTTTCAAATTACCGTGAAACTTAAATTATGAAATTACAATTCTTCTCGGTTGGCAGTTTACATTTTTATAACTATTTCAAAAATGTATCTCCAATTATTTCGATTGAGATTTTTTTTGTTTGAATTTATAATAAACACTTGTAAATAATCAAGTTCAAACACTTTCAGAAACGGCACAGAGTTAATTTGAAGAAAAAAAACAGAGATTTTCAGCCTCATCCAACAAAAATAGTAATTTTTTGGCATTTGTGAAATTGAAGAAGTACTCACCTTCTTCAGAATAAATGCTCATTGGCAATGAATATTAGTAAATCTTTCCTCTCGAAGGACTTAGAGAAAAAAATATGAATGTAATAGGAGATAGTGAACAATCAGGAAAATCAAGACGAGAGAAAATCTCCAAAATCCATTCATTTCTAGGATTATTGGAGAGCTCTCGAGAATATGTTAGACGGCTATTCAGTCAAGTCGTCATGAGGAGAGAATAAATGCTAA</canonical>
            <polymorphic>TGTGCTTGAACGTTCCCGCTTAAGTCCAAAACTTTTTTGCACAAAGAGCACTTTGCTGCAAATTTCTCAAGTTAAAAAAAGCGCCAAATATCGTTACTTAGACTTTGAGCTCAATTATCTCTGTTCCTATAAGAGTTATCAAAAATGTGTCGACTGATGAAATAATGATGATAATATTTTAGAAAATTTTTTGCAACAACTATTTGATATCTGTGACAGGAACCAAGATAAGTTGGCTCGAAGTTGGCTGACGAAGAAAAAAAAATAAAAGAAGAGCTTTTTCATAATTGAAAGGCCCTTCTATTACAGGTTTTACGGTGAAAAGGGTAAAACTCACGGTTCCAGCTTTTCTAGCTTCTTATTGATGTCCTGATGATGTTTTTTTCTTTGATTTTTCAAAATTCTTTTTTGGTTGGCAATGTCTTCAGGGGTGAGTGTCATGGTGAGTTCTGATGAGGACTGATTCTTGATTGGCCATCAGATGACGTGGAAAAAAAGGRCGGAGTTTTCAAATTACCGTGAAACTTAAATTATGAAATTACAATTCTTCTCGGTTGGCAGTTTACATTTTTATAACTATTTCAAAAATGTATCTCCAATTATTTCGATTGAGATTTTTTTTGTTTGAATTTATAATAAACACTTGTAAATAATCAAGTTCAAACACTTTCAGAAACGGCACAGAGTTAATTTGAAGAAAAAAAACAGAGATTTTCAGCCTCATCCAACAAAAATAGTAATTTTTTGGCATTTGTGAAATTGAAGAAGTACTCACCTTCTTCAGAATAAATGCTCATTGGCAATGAATATTAGTAAATCTTTCCTCTCGAAGGACTTAGAGAAAAAAATATGAATGTAATAGGAGATAGTGAACAATCAGGAAAATCAAGACGAGAGAAAATCTCCAAAATCCATTCATTTCTAGGATTATTGGAGAGCTCTCGAGAATATGTTAGACGGCTATTCAGTCAAGTCGTCATGAGGAGAGAATAAATGCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTATTGATGTCCTGATGATGTT</pcr_primer_p1>
		<pcr_primer_p2>CGAAATAATTGGAGATACATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTATTGATGTCCTGATGATGTTTTTTTCTTTGATTTTTCAAAATTCTTTTTTGGTTGGCAATGTCTTCAGGGGTGAGTGTCATGGTGAGTTCTGATGAGGACTGATTCTTGATTGGCCATCAGATGACGTGGAAAAAAAGGACGGAGTTTTCAAATTACCGTGAAACTTAAATTATGAAATTACAATTCTTCTCGGTTGGCAGTTTACATTTTTATAACTATTTCAAAAATGTATCTCCAATTATTTCG</canonical_amplicon>
		<polymorphic_amplicon>CTTATTGATGTCCTGATGATGTTTTTTTCTTTGATTTTTCAAAATTCTTTTTTGGTTGGCAATGTCTTCAGGGGTGAGTGTCATGGTGAGTTCTGATGAGGACTGATTCTTGATTGGCCATCAGATGACGTGGAAAAAAAGGRCGGAGTTTTCAAATTACCGTGAAACTTAAATTATGAAATTACAATTCTTCTCGGTTGGCAGTTTACATTTTTATAACTATTTCAAAAATGTATCTCCAATTATTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28485</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>809301</contig_pos>
        <strand></strand>
        <context>ATTACCGTGA[A/C]ACTTAAATTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGCCATCAGATGACGTGGAAAAAAAGGACGGAGTTTTCAAATTACCGTGA</left_flank>
        <right_flank>ACTTAAATTATGAAATTACAATTCTTCTCGGTTGGCAGTTTACATTTTTA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCAAAACTTTTTTGCACAAAGAGCACTTTGCTGCAAATTTCTCAAGTTAAAAAAAGCGCCAAATATCGTTACTTAGACTTTGAGCTCAATTATCTCTGTTCCTATAAGAGTTATCAAAAATGTGTCGACTGATGAAATAATGATGATAATATTTTAGAAAATTTTTTGCAACAACTATTTGATATCTGTGACAGGAACCAAGATAAGTTGGCTCGAAGTTGGCTGACGAAGAAAAAAAAATAAAAGAAGAGCTTTTTCATAATTGAAAGGCCCTTCTATTACAGGTTTTACGGTGAAAAGGGTAAAACTCACGGTTCCAGCTTTTCTAGCTTCTTATTGATGTCCTGATGATGTTTTTTTCTTTGATTTTTCAAAATTCTTTTTTGGTTGGCAATGTCTTCAGGGGTGAGTGTCATGGTGAGTTCTGATGAGGACTGATTCTTGATTGGCCATCAGATGACGTGGAAAAAAAGGACGGAGTTTTCAAATTACCGTGAAACTTAAATTATGAAATTACAATTCTTCTCGGTTGGCAGTTTACATTTTTATAACTATTTCAAAAATGTATCTCCAATTATTTCGATTGAGATTTTTTTTGTTTGAATTTATAATAAACACTTGTAAATAATCAAGTTCAAACACTTTCAGAAACGGCACAGAGTTAATTTGAAGAAAAAAAACAGAGATTTTCAGCCTCATCCAACAAAAATAGTAATTTTTTGGCATTTGTGAAATTGAAGAAGTACTCACCTTCTTCAGAATAAATGCTCATTGGCAATGAATATTAGTAAATCTTTCCTCTCGAAGGACTTAGAGAAAAAAATATGAATGTAATAGGAGATAGTGAACAATCAGGAAAATCAAGACGAGAGAAAATCTCCAAAATCCATTCATTTCTAGGATTATTGGAGAGCTCTCGAGAATATGTTAGACGGCTATTCAGTCAAGTCGTCATGAGGAGAGAATAAATGCTAATGGTTGATACCCGCCGGTATTTA</canonical>
            <polymorphic>GTCCAAAACTTTTTTGCACAAAGAGCACTTTGCTGCAAATTTCTCAAGTTAAAAAAAGCGCCAAATATCGTTACTTAGACTTTGAGCTCAATTATCTCTGTTCCTATAAGAGTTATCAAAAATGTGTCGACTGATGAAATAATGATGATAATATTTTAGAAAATTTTTTGCAACAACTATTTGATATCTGTGACAGGAACCAAGATAAGTTGGCTCGAAGTTGGCTGACGAAGAAAAAAAAATAAAAGAAGAGCTTTTTCATAATTGAAAGGCCCTTCTATTACAGGTTTTACGGTGAAAAGGGTAAAACTCACGGTTCCAGCTTTTCTAGCTTCTTATTGATGTCCTGATGATGTTTTTTTCTTTGATTTTTCAAAATTCTTTTTTGGTTGGCAATGTCTTCAGGGGTGAGTGTCATGGTGAGTTCTGATGAGGACTGATTCTTGATTGGCCATCAGATGACGTGGAAAAAAAGGACGGAGTTTTCAAATTACCGTGAMACTTAAATTATGAAATTACAATTCTTCTCGGTTGGCAGTTTACATTTTTATAACTATTTCAAAAATGTATCTCCAATTATTTCGATTGAGATTTTTTTTGTTTGAATTTATAATAAACACTTGTAAATAATCAAGTTCAAACACTTTCAGAAACGGCACAGAGTTAATTTGAAGAAAAAAAACAGAGATTTTCAGCCTCATCCAACAAAAATAGTAATTTTTTGGCATTTGTGAAATTGAAGAAGTACTCACCTTCTTCAGAATAAATGCTCATTGGCAATGAATATTAGTAAATCTTTCCTCTCGAAGGACTTAGAGAAAAAAATATGAATGTAATAGGAGATAGTGAACAATCAGGAAAATCAAGACGAGAGAAAATCTCCAAAATCCATTCATTTCTAGGATTATTGGAGAGCTCTCGAGAATATGTTAGACGGCTATTCAGTCAAGTCGTCATGAGGAGAGAATAAATGCTAATGGTTGATACCCGCCGGTATTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTATTGATGTCCTGATGATGTT</pcr_primer_p1>
		<pcr_primer_p2>CGAAATAATTGGAGATACATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTATTGATGTCCTGATGATGTTTTTTTCTTTGATTTTTCAAAATTCTTTTTTGGTTGGCAATGTCTTCAGGGGTGAGTGTCATGGTGAGTTCTGATGAGGACTGATTCTTGATTGGCCATCAGATGACGTGGAAAAAAAGGACGGAGTTTTCAAATTACCGTGAAACTTAAATTATGAAATTACAATTCTTCTCGGTTGGCAGTTTACATTTTTATAACTATTTCAAAAATGTATCTCCAATTATTTCG</canonical_amplicon>
		<polymorphic_amplicon>CTTATTGATGTCCTGATGATGTTTTTTTCTTTGATTTTTCAAAATTCTTTTTTGGTTGGCAATGTCTTCAGGGGTGAGTGTCATGGTGAGTTCTGATGAGGACTGATTCTTGATTGGCCATCAGATGACGTGGAAAAAAAGGACGGAGTTTTCAAATTACCGTGAMACTTAAATTATGAAATTACAATTCTTCTCGGTTGGCAGTTTACATTTTTATAACTATTTCAAAAATGTATCTCCAATTATTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28486</snp_id>
        <super_contig>c003800623.Contig2</super_contig>
        <contig_pos>809337</contig_pos>
        <strand></strand>
        <context>TCTCGGTTGG[C/T]AGTTTACATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAAATTACCGTGAAACTTAAATTATGAAATTACAATTCTTCTCGGTTGG</left_flank>
        <right_flank>AGTTTACATTTTTATAACTATTTCAAAAATGTATCTCCAATTATTTCGAT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTCTCAAGTTAAAAAAAGCGCCAAATATCGTTACTTAGACTTTGAGCTCAATTATCTCTGTTCCTATAAGAGTTATCAAAAATGTGTCGACTGATGAAATAATGATGATAATATTTTAGAAAATTTTTTGCAACAACTATTTGATATCTGTGACAGGAACCAAGATAAGTTGGCTCGAAGTTGGCTGACGAAGAAAAAAAAATAAAAGAAGAGCTTTTTCATAATTGAAAGGCCCTTCTATTACAGGTTTTACGGTGAAAAGGGTAAAACTCACGGTTCCAGCTTTTCTAGCTTCTTATTGATGTCCTGATGATGTTTTTTTCTTTGATTTTTCAAAATTCTTTTTTGGTTGGCAATGTCTTCAGGGGTGAGTGTCATGGTGAGTTCTGATGAGGACTGATTCTTGATTGGCCATCAGATGACGTGGAAAAAAAGGACGGAGTTTTCAAATTACCGTGAAACTTAAATTATGAAATTACAATTCTTCTCGGTTGGCAGTTTACATTTTTATAACTATTTCAAAAATGTATCTCCAATTATTTCGATTGAGATTTTTTTTGTTTGAATTTATAATAAACACTTGTAAATAATCAAGTTCAAACACTTTCAGAAACGGCACAGAGTTAATTTGAAGAAAAAAAACAGAGATTTTCAGCCTCATCCAACAAAAATAGTAATTTTTTGGCATTTGTGAAATTGAAGAAGTACTCACCTTCTTCAGAATAAATGCTCATTGGCAATGAATATTAGTAAATCTTTCCTCTCGAAGGACTTAGAGAAAAAAATATGAATGTAATAGGAGATAGTGAACAATCAGGAAAATCAAGACGAGAGAAAATCTCCAAAATCCATTCATTTCTAGGATTATTGGAGAGCTCTCGAGAATATGTTAGACGGCTATTCAGTCAAGTCGTCATGAGGAGAGAATAAATGCTAATGGTTGATACCCGCCGGTATTTATACCACCAATTTGGGGCGGAGACTTTAGGGTCCAAC</canonical>
            <polymorphic>AAATTTCTCAAGTTAAAAAAAGCGCCAAATATCGTTACTTAGACTTTGAGCTCAATTATCTCTGTTCCTATAAGAGTTATCAAAAATGTGTCGACTGATGAAATAATGATGATAATATTTTAGAAAATTTTTTGCAACAACTATTTGATATCTGTGACAGGAACCAAGATAAGTTGGCTCGAAGTTGGCTGACGAAGAAAAAAAAATAAAAGAAGAGCTTTTTCATAATTGAAAGGCCCTTCTATTACAGGTTTTACGGTGAAAAGGGTAAAACTCACGGTTCCAGCTTTTCTAGCTTCTTATTGATGTCCTGATGATGTTTTTTTCTTTGATTTTTCAAAATTCTTTTTTGGTTGGCAATGTCTTCAGGGGTGAGTGTCATGGTGAGTTCTGATGAGGACTGATTCTTGATTGGCCATCAGATGACGTGGAAAAAAAGGACGGAGTTTTCAAATTACCGTGAAACTTAAATTATGAAATTACAATTCTTCTCGGTTGGYAGTTTACATTTTTATAACTATTTCAAAAATGTATCTCCAATTATTTCGATTGAGATTTTTTTTGTTTGAATTTATAATAAACACTTGTAAATAATCAAGTTCAAACACTTTCAGAAACGGCACAGAGTTAATTTGAAGAAAAAAAACAGAGATTTTCAGCCTCATCCAACAAAAATAGTAATTTTTTGGCATTTGTGAAATTGAAGAAGTACTCACCTTCTTCAGAATAAATGCTCATTGGCAATGAATATTAGTAAATCTTTCCTCTCGAAGGACTTAGAGAAAAAAATATGAATGTAATAGGAGATAGTGAACAATCAGGAAAATCAAGACGAGAGAAAATCTCCAAAATCCATTCATTTCTAGGATTATTGGAGAGCTCTCGAGAATATGTTAGACGGCTATTCAGTCAAGTCGTCATGAGGAGAGAATAAATGCTAATGGTTGATACCCGCCGGTATTTATACCACCAATTTGGGGCGGAGACTTTAGGGTCCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATGTCCTGATGATGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTCAATCGAAATAATTGGAGATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGATGTCCTGATGATGTTTTTTTCTTTGATTTTTCAAAATTCTTTTTTGGTTGGCAATGTCTTCAGGGGTGAGTGTCATGGTGAGTTCTGATGAGGACTGATTCTTGATTGGCCATCAGATGACGTGGAAAAAAAGGACGGAGTTTTCAAATTACCGTGAAACTTAAATTATGAAATTACAATTCTTCTCGGTTGGCAGTTTACATTTTTATAACTATTTCAAAAATGTATCTCCAATTATTTCGATTGAG</canonical_amplicon>
		<polymorphic_amplicon>TGATGTCCTGATGATGTTTTTTTCTTTGATTTTTCAAAATTCTTTTTTGGTTGGCAATGTCTTCAGGGGTGAGTGTCATGGTGAGTTCTGATGAGGACTGATTCTTGATTGGCCATCAGATGACGTGGAAAAAAAGGACGGAGTTTTCAAATTACCGTGAAACTTAAATTATGAAATTACAATTCTTCTCGGTTGGYAGTTTACATTTTTATAACTATTTCAAAAATGTATCTCCAATTATTTCGATTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28487</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>7833</contig_pos>
        <strand>+</strand>
        <context>ATAAATTAGT[A/G]TCATAAATAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGCTATAGTTAAATATAATCAAAAAACATAAATTGGGCATAAATTAGT</left_flank>
        <right_flank>TCATAAATATCAAAAAATAGGAAAAGGGATGTGACATAAATTGCGGGAAT</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGATTCGTGAATCTCTTTCTAATTTTTTTTTTCAATCCGTCATATTCCTATCAATAATCCTTTGCTTCTGTGTCATTTTTCCCAAACCTGTAACAATTTCTCCCCTTCTTAAATTGTTATTTTCTGTCGTTCTGTTTTTGTTTCTTCAAATATAAAGTTCCATGAAATTCAACTATGTTCTAAAATGTACTTCTACAAACAACAGTACCCAGAGCTAAACATCCGCTCAGACAAGAATAAAGTTCCCGCCGGAGTGTTAAACGAAGTTCCTGCCGCAGGGCAGCGGCAGGAACTTTTTTTTTTTAGCTTGCCGGCATGAACTTTCCCGTCGGCAGATAAATCCCCTTTACTCATCCTCCTTTTTTCAGTACATTTTCACAAACAAAACAACATGTAAATTCAGTTGAATTTATTAAAAATGATACTTTCTATGTCTACAAATACGGAAAGCTATAGTTAAATATAATCAAAAAACATAAATTGGGCATAAATTAGTATCATAAATATCAAAAAATAGGAAAAGGGATGTGACATAAATTGCGGGAATTATTTGTCAGCATCAAATTTTGGCATTCCGAGCCAAAGAATCGAATTTTTGGATCGTCTTTCATATGTTCCGAATGATTTGAGGAGCGTAGAAGACGATGAAGACGAATTCTGAAATATTAGGAATATTAGATTTTGCAAGCGAATAAAAGGAACTCACAGTCATCGATGATTCATTTTGTCGCTGGTGGTTGTCCTAACTTAGAATGATCGGCTCCAGCTCTGGACTATCTCCTGAAAAAAACTAGACAAATTAAAAAAAAGGTCATCATTTTATTAGAAATTTTGCCATTCGAGCATGTATACTGTCCCCGACCAAACGAAATTGTATACATCTTGAACAAGAATAAGAAATAAAAACAGTTACATCCACTTTTTACTATGAAATGAAAAGAACGACGAAGAAAACGAAGAAAATGAAAAAAAAAATCCAGCCGCGCGGAGCGTTGTT</canonical>
            <polymorphic>TTTTGATTCGTGAATCTCTTTCTAATTTTTTTTTTCAATCCGTCATATTCCTATCAATAATCCTTTGCTTCTGTGTCATTTTTCCCAAACCTGTAACAATTTCTCCCCTTCTTAAATTGTTATTTTCTGTCGTTCTGTTTTTGTTTCTTCAAATATAAAGTTCCATGAAATTCAACTATGTTCTAAAATGTACTTCTACAAACAACAGTACCCAGAGCTAAACATCCGCTCAGACAAGAATAAAGTTCCCGCCGGAGTGTTAAACGAAGTTCCTGCCGCAGGGCAGCGGCAGGAACTTTTTTTTTTTAGCTTGCCGGCATGAACTTTCCCGTCGGCAGATAAATCCCCTTTACTCATCCTCCTTTTTTCAGTACATTTTCACAAACAAAACAACATGTAAATTCAGTTGAATTTATTAAAAATGATACTTTCTATGTCTACAAATACGGAAAGCTATAGTTAAATATAATCAAAAAACATAAATTGGGCATAAATTAGTRTCATAAATATCAAAAAATAGGAAAAGGGATGTGACATAAATTGCGGGAATTATTTGTCAGCATCAAATTTTGGCATTCCGAGCCAAAGAATCGAATTTTTGGATCGTCTTTCATATGTTCCGAATGATTTGAGGAGCGTAGAAGACGATGAAGACGAATTCTGAAATATTAGGAATATTAGATTTTGCAAGCGAATAAAAGGAACTCACAGTCATCGATGATTCATTTTGTCGCTGGTGGTTGTCCTAACTTAGAATGATCGGCTCCAGCTCTGGACTATCTCCTGAAAAAAACTAGACAAATTAAAAAAAAGGTCATCATTTTATTAGAAATTTTGCCATTCGAGCATGTATACTGTCCCCGACCAAACGAAATTGTATACATCTTGAACAAGAATAAGAAATAAAAACAGTTACATCCACTTTTTACTATGAAATGAAAAGAACGACGAAGAAAACGAAGAAAATGAAAAAAAAAATCCAGCCGCGCGGAGCGTTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAGTACATTTTCACAAACAAA</pcr_primer_p1>
		<pcr_primer_p2>ATATGAAAGACGATCCAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCAGTACATTTTCACAAACAAAACAACATGTAAATTCAGTTGAATTTATTAAAAATGATACTTTCTATGTCTACAAATACGGAAAGCTATAGTTAAATATAATCAAAAAACATAAATTGGGCATAAATTAGTATCATAAATATCAAAAAATAGGAAAAGGGATGTGACATAAATTGCGGGAATTATTTGTCAGCATCAAATTTTGGCATTCCGAGCCAAAGAATCGAATTTTTGGATCGTCTTTCATAT</canonical_amplicon>
		<polymorphic_amplicon>TTCAGTACATTTTCACAAACAAAACAACATGTAAATTCAGTTGAATTTATTAAAAATGATACTTTCTATGTCTACAAATACGGAAAGCTATAGTTAAATATAATCAAAAAACATAAATTGGGCATAAATTAGTRTCATAAATATCAAAAAATAGGAAAAGGGATGTGACATAAATTGCGGGAATTATTTGTCAGCATCAAATTTTGGCATTCCGAGCCAAAGAATCGAATTTTTGGATCGTCTTTCATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28488</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>7954</contig_pos>
        <strand>+</strand>
        <context>TCATATGTTC[C/G]GAATGATTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGGCATTCCGAGCCAAAGAATCGAATTTTTGGATCGTCTTTCATATGTTC</left_flank>
        <right_flank>GAATGATTTGAGGAGCGTAGAAGACGATGAAGACGAATTCTGAAATATTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTCTGTCGTTCTGTTTTTGTTTCTTCAAATATAAAGTTCCATGAAATTCAACTATGTTCTAAAATGTACTTCTACAAACAACAGTACCCAGAGCTAAACATCCGCTCAGACAAGAATAAAGTTCCCGCCGGAGTGTTAAACGAAGTTCCTGCCGCAGGGCAGCGGCAGGAACTTTTTTTTTTTAGCTTGCCGGCATGAACTTTCCCGTCGGCAGATAAATCCCCTTTACTCATCCTCCTTTTTTCAGTACATTTTCACAAACAAAACAACATGTAAATTCAGTTGAATTTATTAAAAATGATACTTTCTATGTCTACAAATACGGAAAGCTATAGTTAAATATAATCAAAAAACATAAATTGGGCATAAATTAGTATCATAAATATCAAAAAATAGGAAAAGGGATGTGACATAAATTGCGGGAATTATTTGTCAGCATCAAATTTTGGCATTCCGAGCCAAAGAATCGAATTTTTGGATCGTCTTTCATATGTTCCGAATGATTTGAGGAGCGTAGAAGACGATGAAGACGAATTCTGAAATATTAGGAATATTAGATTTTGCAAGCGAATAAAAGGAACTCACAGTCATCGATGATTCATTTTGTCGCTGGTGGTTGTCCTAACTTAGAATGATCGGCTCCAGCTCTGGACTATCTCCTGAAAAAAACTAGACAAATTAAAAAAAAGGTCATCATTTTATTAGAAATTTTGCCATTCGAGCATGTATACTGTCCCCGACCAAACGAAATTGTATACATCTTGAACAAGAATAAGAAATAAAAACAGTTACATCCACTTTTTACTATGAAATGAAAAGAACGACGAAGAAAACGAAGAAAATGAAAAAAAAAATCCAGCCGCGCGGAGCGTTGTTTAACCTGCTGGCAGGATCTTTTCCTTCTAGCCTGCCGGCAGCAGCTTTTTTGATGATGCAATCGTCATTTTACCTGCCGGATATAACTTTGAACACAATAGTTCCTGCCGGCGGCAATCTT</canonical>
            <polymorphic>ATTTTCTGTCGTTCTGTTTTTGTTTCTTCAAATATAAAGTTCCATGAAATTCAACTATGTTCTAAAATGTACTTCTACAAACAACAGTACCCAGAGCTAAACATCCGCTCAGACAAGAATAAAGTTCCCGCCGGAGTGTTAAACGAAGTTCCTGCCGCAGGGCAGCGGCAGGAACTTTTTTTTTTTAGCTTGCCGGCATGAACTTTCCCGTCGGCAGATAAATCCCCTTTACTCATCCTCCTTTTTTCAGTACATTTTCACAAACAAAACAACATGTAAATTCAGTTGAATTTATTAAAAATGATACTTTCTATGTCTACAAATACGGAAAGCTATAGTTAAATATAATCAAAAAACATAAATTGGGCATAAATTAGTATCATAAATATCAAAAAATAGGAAAAGGGATGTGACATAAATTGCGGGAATTATTTGTCAGCATCAAATTTTGGCATTCCGAGCCAAAGAATCGAATTTTTGGATCGTCTTTCATATGTTCSGAATGATTTGAGGAGCGTAGAAGACGATGAAGACGAATTCTGAAATATTAGGAATATTAGATTTTGCAAGCGAATAAAAGGAACTCACAGTCATCGATGATTCATTTTGTCGCTGGTGGTTGTCCTAACTTAGAATGATCGGCTCCAGCTCTGGACTATCTCCTGAAAAAAACTAGACAAATTAAAAAAAAGGTCATCATTTTATTAGAAATTTTGCCATTCGAGCATGTATACTGTCCCCGACCAAACGAAATTGTATACATCTTGAACAAGAATAAGAAATAAAAACAGTTACATCCACTTTTTACTATGAAATGAAAAGAACGACGAAGAAAACGAAGAAAATGAAAAAAAAAATCCAGCCGCGCGGAGCGTTGTTTAACCTGCTGGCAGGATCTTTTCCTTCTAGCCTGCCGGCAGCAGCTTTTTTGATGATGCAATCGTCATTTTACCTGCCGGATATAACTTTGAACACAATAGTTCCTGCCGGCGGCAATCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATAGGAAAAGGGATGTGA</pcr_primer_p1>
		<pcr_primer_p2>CGATCATTCTAAGTTAGGACAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAATAGGAAAAGGGATGTGACATAAATTGCGGGAATTATTTGTCAGCATCAAATTTTGGCATTCCGAGCCAAAGAATCGAATTTTTGGATCGTCTTTCATATGTTCCGAATGATTTGAGGAGCGTAGAAGACGATGAAGACGAATTCTGAAATATTAGGAATATTAGATTTTGCAAGCGAATAAAAGGAACTCACAGTCATCGATGATTCATTTTGTCGCTGGTGGTTGTCCTAACTTAGAATGATCG</canonical_amplicon>
		<polymorphic_amplicon>AAAATAGGAAAAGGGATGTGACATAAATTGCGGGAATTATTTGTCAGCATCAAATTTTGGCATTCCGAGCCAAAGAATCGAATTTTTGGATCGTCTTTCATATGTTCSGAATGATTTGAGGAGCGTAGAAGACGATGAAGACGAATTCTGAAATATTAGGAATATTAGATTTTGCAAGCGAATAAAAGGAACTCACAGTCATCGATGATTCATTTTGTCGCTGGTGGTTGTCCTAACTTAGAATGATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28489</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>8208</contig_pos>
        <strand>+</strand>
        <context>CCAAACGAAA[A/T]TGTATACATC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTAGAAATTTTGCCATTCGAGCATGTATACTGTCCCCGACCAAACGAAA</left_flank>
        <right_flank>TGTATACATCTTGAACAAGAATAAGAAATAAAAACAGTTACATCCACTTT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCACAAACAAAACAACATGTAAATTCAGTTGAATTTATTAAAAATGATACTTTCTATGTCTACAAATACGGAAAGCTATAGTTAAATATAATCAAAAAACATAAATTGGGCATAAATTAGTATCATAAATATCAAAAAATAGGAAAAGGGATGTGACATAAATTGCGGGAATTATTTGTCAGCATCAAATTTTGGCATTCCGAGCCAAAGAATCGAATTTTTGGATCGTCTTTCATATGTTCCGAATGATTTGAGGAGCGTAGAAGACGATGAAGACGAATTCTGAAATATTAGGAATATTAGATTTTGCAAGCGAATAAAAGGAACTCACAGTCATCGATGATTCATTTTGTCGCTGGTGGTTGTCCTAACTTAGAATGATCGGCTCCAGCTCTGGACTATCTCCTGAAAAAAACTAGACAAATTAAAAAAAAGGTCATCATTTTATTAGAAATTTTGCCATTCGAGCATGTATACTGTCCCCGACCAAACGAAATTGTATACATCTTGAACAAGAATAAGAAATAAAAACAGTTACATCCACTTTTTACTATGAAATGAAAAGAACGACGAAGAAAACGAAGAAAATGAAAAAAAAAATCCAGCCGCGCGGAGCGTTGTTTAACCTGCTGGCAGGATCTTTTCCTTCTAGCCTGCCGGCAGCAGCTTTTTTGATGATGCAATCGTCATTTTACCTGCCGGATATAACTTTGAACACAATAGTTCCTGCCGGCGGCAATCTTAACCCCCCGGCAGGAACTTCATTTCTTGTCTGGTTGATACCAAAGTTCACTGTTGACTTTTTCCATGTCTTTTTCCATATTTGCATACTTGTAACGGGCCGGGCCGGGCTTTTTCCGGAATTTCGGAGGCCCGGCGGGCCCGTCATTTCATTAGTTTCGAAATTTTCAAAAAACACATAAGGGGGGACCCTTATGTGATTTTTTTCGACCAAAAAAGTTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACAT</canonical>
            <polymorphic>TTTTCACAAACAAAACAACATGTAAATTCAGTTGAATTTATTAAAAATGATACTTTCTATGTCTACAAATACGGAAAGCTATAGTTAAATATAATCAAAAAACATAAATTGGGCATAAATTAGTATCATAAATATCAAAAAATAGGAAAAGGGATGTGACATAAATTGCGGGAATTATTTGTCAGCATCAAATTTTGGCATTCCGAGCCAAAGAATCGAATTTTTGGATCGTCTTTCATATGTTCCGAATGATTTGAGGAGCGTAGAAGACGATGAAGACGAATTCTGAAATATTAGGAATATTAGATTTTGCAAGCGAATAAAAGGAACTCACAGTCATCGATGATTCATTTTGTCGCTGGTGGTTGTCCTAACTTAGAATGATCGGCTCCAGCTCTGGACTATCTCCTGAAAAAAACTAGACAAATTAAAAAAAAGGTCATCATTTTATTAGAAATTTTGCCATTCGAGCATGTATACTGTCCCCGACCAAACGAAAWTGTATACATCTTGAACAAGAATAAGAAATAAAAACAGTTACATCCACTTTTTACTATGAAATGAAAAGAACGACGAAGAAAACGAAGAAAATGAAAAAAAAAATCCAGCCGCGCGGAGCGTTGTTTAACCTGCTGGCAGGATCTTTTCCTTCTAGCCTGCCGGCAGCAGCTTTTTTGATGATGCAATCGTCATTTTACCTGCCGGATATAACTTTGAACACAATAGTTCCTGCCGGCGGCAATCTTAACCCCCCGGCAGGAACTTCATTTCTTGTCTGGTTGATACCAAAGTTCACTGTTGACTTTTTCCATGTCTTTTTCCATATTTGCATACTTGTAACGGGCCGGGCCGGGCTTTTTCCGGAATTTCGGAGGCCCGGCGGGCCCGTCATTTCATTAGTTTCGAAATTTTCAAAAAACACATAAGGGGGGACCCTTATGTGATTTTTTTCGACCAAAAAAGTTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>367 144 94 72 63 46 42 42 30 28 24 18 11 10 9</canonical_bands>
                <polymorphic_bands>409 144 94 72 63 46 42 30 28 24 18 11 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAATAAAAGGAACTCACAGTC</pcr_primer_p1>
		<pcr_primer_p2>TCATAGTAAAAAGTGGATGTAACTG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CGAATAAAAGGAACTCACAGTCATCGATGATTCATTTTGTCGCTGGTGGTTGTCCTAACTTAGAATGATCGGCTCCAGCTCTGGACTATCTCCTGAAAAAAACTAGACAAATTAAAAAAAAGGTCATCATTTTATTAGAAATTTTGCCATTCGAGCATGTATACTGTCCCCGACCAAACGAAATTGTATACATCTTGAACAAGAATAAGAAATAAAAACAGTTACATCCACTTTTTACTATGA</canonical_amplicon>
		<polymorphic_amplicon>CGAATAAAAGGAACTCACAGTCATCGATGATTCATTTTGTCGCTGGTGGTTGTCCTAACTTAGAATGATCGGCTCCAGCTCTGGACTATCTCCTGAAAAAAACTAGACAAATTAAAAAAAAGGTCATCATTTTATTAGAAATTTTGCCATTCGAGCATGTATACTGTCCCCGACCAAACGAAAWTGTATACATCTTGAACAAGAATAAGAAATAAAAACAGTTACATCCACTTTTTACTATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28490</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>8220</contig_pos>
        <strand>+</strand>
        <context>GTATACATCT[A/G]GAACAAKAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCATTCGAGCATGTATACTGTCCCCGACCAAACGAAATTGTATACATCT</left_flank>
        <right_flank>GAACAAGAATAAGAAATAAAAACAGTTACATCCACTTTTTACTATGAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACAACATGTAAATTCAGTTGAATTTATTAAAAATGATACTTTCTATGTCTACAAATACGGAAAGCTATAGTTAAATATAATCAAAAAACATAAATTGGGCATAAATTAGTATCATAAATATCAAAAAATAGGAAAAGGGATGTGACATAAATTGCGGGAATTATTTGTCAGCATCAAATTTTGGCATTCCGAGCCAAAGAATCGAATTTTTGGATCGTCTTTCATATGTTCCGAATGATTTGAGGAGCGTAGAAGACGATGAAGACGAATTCTGAAATATTAGGAATATTAGATTTTGCAAGCGAATAAAAGGAACTCACAGTCATCGATGATTCATTTTGTCGCTGGTGGTTGTCCTAACTTAGAATGATCGGCTCCAGCTCTGGACTATCTCCTGAAAAAAACTAGACAAATTAAAAAAAAGGTCATCATTTTATTAGAAATTTTGCCATTCGAGCATGTATACTGTCCCCGACCAAACGAAATTGTATACATCTTGAACAAGAATAAGAAATAAAAACAGTTACATCCACTTTTTACTATGAAATGAAAAGAACGACGAAGAAAACGAAGAAAATGAAAAAAAAAATCCAGCCGCGCGGAGCGTTGTTTAACCTGCTGGCAGGATCTTTTCCTTCTAGCCTGCCGGCAGCAGCTTTTTTGATGATGCAATCGTCATTTTACCTGCCGGATATAACTTTGAACACAATAGTTCCTGCCGGCGGCAATCTTAACCCCCCGGCAGGAACTTCATTTCTTGTCTGGTTGATACCAAAGTTCACTGTTGACTTTTTCCATGTCTTTTTCCATATTTGCATACTTGTAACGGGCCGGGCCGGGCTTTTTCCGGAATTTCGGAGGCCCGGCGGGCCCGTCATTTCATTAGTTTCGAAATTTTCAAAAAACACATAAGGGGGGACCCTTATGTGATTTTTTTCGACCAAAAAAGTTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACATACAAACAATCCG</canonical>
            <polymorphic>AAACAACATGTAAATTCAGTTGAATTTATTAAAAATGATACTTTCTATGTCTACAAATACGGAAAGCTATAGTTAAATATAATCAAAAAACATAAATTGGGCATAAATTAGTATCATAAATATCAAAAAATAGGAAAAGGGATGTGACATAAATTGCGGGAATTATTTGTCAGCATCAAATTTTGGCATTCCGAGCCAAAGAATCGAATTTTTGGATCGTCTTTCATATGTTCCGAATGATTTGAGGAGCGTAGAAGACGATGAAGACGAATTCTGAAATATTAGGAATATTAGATTTTGCAAGCGAATAAAAGGAACTCACAGTCATCGATGATTCATTTTGTCGCTGGTGGTTGTCCTAACTTAGAATGATCGGCTCCAGCTCTGGACTATCTCCTGAAAAAAACTAGACAAATTAAAAAAAAGGTCATCATTTTATTAGAAATTTTGCCATTCGAGCATGTATACTGTCCCCGACCAAACGAAATTGTATACATCTRGAACAAGAATAAGAAATAAAAACAGTTACATCCACTTTTTACTATGAAATGAAAAGAACGACGAAGAAAACGAAGAAAATGAAAAAAAAAATCCAGCCGCGCGGAGCGTTGTTTAACCTGCTGGCAGGATCTTTTCCTTCTAGCCTGCCGGCAGCAGCTTTTTTGATGATGCAATCGTCATTTTACCTGCCGGATATAACTTTGAACACAATAGTTCCTGCCGGCGGCAATCTTAACCCCCCGGCAGGAACTTCATTTCTTGTCTGGTTGATACCAAAGTTCACTGTTGACTTTTTCCATGTCTTTTTCCATATTTGCATACTTGTAACGGGCCGGGCCGGGCTTTTTCCGGAATTTCGGAGGCCCGGCGGGCCCGTCATTTCATTAGTTTCGAAATTTTCAAAAAACACATAAGGGGGGACCCTTATGTGATTTTTTTCGACCAAAAAAGTTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACATACAAACAATCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTATTAGAAATTTTGCCATTC</pcr_primer_p1>
		<pcr_primer_p2>GTAAAATGACGATTGCATCA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTTTATTAGAAATTTTGCCATTCGAGCATGTATACTGTCCCCGACCAAACGAAATTGTATACATCTTGAACAAGAATAAGAAATAAAAACAGTTACATCCACTTTTTACTATGAAATGAAAAGAACGACGAAGAAAACGAAGAAAATGAAAAAAAAAATCCAGCCGCGCGGAGCGTTGTTTAACCTGCTGGCAGGATCTTTTCCTTCTAGCCTGCCGGCAGCAGCTTTTTTGATGATGCAATCGTCATTTTAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTATTAGAAATTTTGCCATTCGAGCATGTATACTGTCCCCGACCAAACGAAATTGTATACATCTRGAACAAGAATAAGAAATAAAAACAGTTACATCCACTTTTTACTATGAAATGAAAAGAACGACGAAGAAAACGAAGAAAATGAAAAAAAAAATCCAGCCGCGCGGAGCGTTGTTTAACCTGCTGGCAGGATCTTTTCCTTCTAGCCTGCCGGCAGCAGCTTTTTTGATGATGCAATCGTCATTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28491</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>8227</contig_pos>
        <strand>+</strand>
        <context>TCTRGAACAA[G/T]AATAAGAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAGCATGTATACTGTCCCCGACCAAACGAAATTGTATACATCTTGAACAA</left_flank>
        <right_flank>AATAAGAAATAAAAACAGTTACATCCACTTTTTACTATGAAATGAAAAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTAAATTCAGTTGAATTTATTAAAAATGATACTTTCTATGTCTACAAATACGGAAAGCTATAGTTAAATATAATCAAAAAACATAAATTGGGCATAAATTAGTATCATAAATATCAAAAAATAGGAAAAGGGATGTGACATAAATTGCGGGAATTATTTGTCAGCATCAAATTTTGGCATTCCGAGCCAAAGAATCGAATTTTTGGATCGTCTTTCATATGTTCCGAATGATTTGAGGAGCGTAGAAGACGATGAAGACGAATTCTGAAATATTAGGAATATTAGATTTTGCAAGCGAATAAAAGGAACTCACAGTCATCGATGATTCATTTTGTCGCTGGTGGTTGTCCTAACTTAGAATGATCGGCTCCAGCTCTGGACTATCTCCTGAAAAAAACTAGACAAATTAAAAAAAAGGTCATCATTTTATTAGAAATTTTGCCATTCGAGCATGTATACTGTCCCCGACCAAACGAAATTGTATACATCTTGAACAAGAATAAGAAATAAAAACAGTTACATCCACTTTTTACTATGAAATGAAAAGAACGACGAAGAAAACGAAGAAAATGAAAAAAAAAATCCAGCCGCGCGGAGCGTTGTTTAACCTGCTGGCAGGATCTTTTCCTTCTAGCCTGCCGGCAGCAGCTTTTTTGATGATGCAATCGTCATTTTACCTGCCGGATATAACTTTGAACACAATAGTTCCTGCCGGCGGCAATCTTAACCCCCCGGCAGGAACTTCATTTCTTGTCTGGTTGATACCAAAGTTCACTGTTGACTTTTTCCATGTCTTTTTCCATATTTGCATACTTGTAACGGGCCGGGCCGGGCTTTTTCCGGAATTTCGGAGGCCCGGCGGGCCCGTCATTTCATTAGTTTCGAAATTTTCAAAAAACACATAAGGGGGGACCCTTATGTGATTTTTTTCGACCAAAAAAGTTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACATACAAACAATCCGAAATACG</canonical>
            <polymorphic>ATGTAAATTCAGTTGAATTTATTAAAAATGATACTTTCTATGTCTACAAATACGGAAAGCTATAGTTAAATATAATCAAAAAACATAAATTGGGCATAAATTAGTATCATAAATATCAAAAAATAGGAAAAGGGATGTGACATAAATTGCGGGAATTATTTGTCAGCATCAAATTTTGGCATTCCGAGCCAAAGAATCGAATTTTTGGATCGTCTTTCATATGTTCCGAATGATTTGAGGAGCGTAGAAGACGATGAAGACGAATTCTGAAATATTAGGAATATTAGATTTTGCAAGCGAATAAAAGGAACTCACAGTCATCGATGATTCATTTTGTCGCTGGTGGTTGTCCTAACTTAGAATGATCGGCTCCAGCTCTGGACTATCTCCTGAAAAAAACTAGACAAATTAAAAAAAAGGTCATCATTTTATTAGAAATTTTGCCATTCGAGCATGTATACTGTCCCCGACCAAACGAAATTGTATACATCTTGAACAAKAATAAGAAATAAAAACAGTTACATCCACTTTTTACTATGAAATGAAAAGAACGACGAAGAAAACGAAGAAAATGAAAAAAAAAATCCAGCCGCGCGGAGCGTTGTTTAACCTGCTGGCAGGATCTTTTCCTTCTAGCCTGCCGGCAGCAGCTTTTTTGATGATGCAATCGTCATTTTACCTGCCGGATATAACTTTGAACACAATAGTTCCTGCCGGCGGCAATCTTAACCCCCCGGCAGGAACTTCATTTCTTGTCTGGTTGATACCAAAGTTCACTGTTGACTTTTTCCATGTCTTTTTCCATATTTGCATACTTGTAACGGGCCGGGCCGGGCTTTTTCCGGAATTTCGGAGGCCCGGCGGGCCCGTCATTTCATTAGTTTCGAAATTTTCAAAAAACACATAAGGGGGGACCCTTATGTGATTTTTTTCGACCAAAAAAGTTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACATACAAACAATCCGAAATACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTATTAGAAATTTTGCCATTC</pcr_primer_p1>
		<pcr_primer_p2>GTAAAATGACGATTGCATCA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTTTATTAGAAATTTTGCCATTCGAGCATGTATACTGTCCCCGACCAAACGAAATTGTATACATCTTGAACAAGAATAAGAAATAAAAACAGTTACATCCACTTTTTACTATGAAATGAAAAGAACGACGAAGAAAACGAAGAAAATGAAAAAAAAAATCCAGCCGCGCGGAGCGTTGTTTAACCTGCTGGCAGGATCTTTTCCTTCTAGCCTGCCGGCAGCAGCTTTTTTGATGATGCAATCGTCATTTTAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTATTAGAAATTTTGCCATTCGAGCATGTATACTGTCCCCGACCAAACGAAATTGTATACATCTTGAACAAKAATAAGAAATAAAAACAGTTACATCCACTTTTTACTATGAAATGAAAAGAACGACGAAGAAAACGAAGAAAATGAAAAAAAAAATCCAGCCGCGCGGAGCGTTGTTTAACCTGCTGGCAGGATCTTTTCCTTCTAGCCTGCCGGCAGCAGCTTTTTTGATGATGCAATCGTCATTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28492</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>8271</contig_pos>
        <strand></strand>
        <context>ACTATGAAAT[G/A]AAAAGAACGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAACAAGAATAAGAAATAAAAACAGTTACATCCACTTTTTACTATGAAAT</left_flank>
        <right_flank>AAAAGAACGACGAAGAAAACGAAGAAAATGAAAAAAAAAATCCAGCCGCG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACAAATACGGAAAGCTATAGTTAAATATAATCAAAAAACATAAATTGGGCATAAATTAGTATCATAAATATCAAAAAATAGGAAAAGGGATGTGACATAAATTGCGGGAATTATTTGTCAGCATCAAATTTTGGCATTCCGAGCCAAAGAATCGAATTTTTGGATCGTCTTTCATATGTTCCGAATGATTTGAGGAGCGTAGAAGACGATGAAGACGAATTCTGAAATATTAGGAATATTAGATTTTGCAAGCGAATAAAAGGAACTCACAGTCATCGATGATTCATTTTGTCGCTGGTGGTTGTCCTAACTTAGAATGATCGGCTCCAGCTCTGGACTATCTCCTGAAAAAAACTAGACAAATTAAAAAAAAGGTCATCATTTTATTAGAAATTTTGCCATTCGAGCATGTATACTGTCCCCGACCAAACGAAATTGTATACATCTTGAACAAGAATAAGAAATAAAAACAGTTACATCCACTTTTTACTATGAAATGAAAAGAACGACGAAGAAAACGAAGAAAATGAAAAAAAAAATCCAGCCGCGCGGAGCGTTGTTTAACCTGCTGGCAGGATCTTTTCCTTCTAGCCTGCCGGCAGCAGCTTTTTTGATGATGCAATCGTCATTTTACCTGCCGGATATAACTTTGAACACAATAGTTCCTGCCGGCGGCAATCTTAACCCCCCGGCAGGAACTTCATTTCTTGTCTGGTTGATACCAAAGTTCACTGTTGACTTTTTCCATGTCTTTTTCCATATTTGCATACTTGTAACGGGCCGGGCCGGGCTTTTTCCGGAATTTCGGAGGCCCGGCGGGCCCGTCATTTCATTAGTTTCGAAATTTTCAAAAAACACATAAGGGGGGACCCTTATGTGATTTTTTTCGACCAAAAAAGTTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACATACAAACAATCCGAAATACGAAAAAGAAAAATGGAAAAAATTACATTGAGAGCTCAAAATTTGG</canonical>
            <polymorphic>TACAAATACGGAAAGCTATAGTTAAATATAATCAAAAAACATAAATTGGGCATAAATTAGTATCATAAATATCAAAAAATAGGAAAAGGGATGTGACATAAATTGCGGGAATTATTTGTCAGCATCAAATTTTGGCATTCCGAGCCAAAGAATCGAATTTTTGGATCGTCTTTCATATGTTCCGAATGATTTGAGGAGCGTAGAAGACGATGAAGACGAATTCTGAAATATTAGGAATATTAGATTTTGCAAGCGAATAAAAGGAACTCACAGTCATCGATGATTCATTTTGTCGCTGGTGGTTGTCCTAACTTAGAATGATCGGCTCCAGCTCTGGACTATCTCCTGAAAAAAACTAGACAAATTAAAAAAAAGGTCATCATTTTATTAGAAATTTTGCCATTCGAGCATGTATACTGTCCCCGACCAAACGAAATTGTATACATCTTGAACAAGAATAAGAAATAAAAACAGTTACATCCACTTTTTACTATGAAATRAAAAGAACGACGAAGAAAACGAAGAAAATGAAAAAAAAAATCCAGCCGCGCGGAGCGTTGTTTAACCTGCTGGCAGGATCTTTTCCTTCTAGCCTGCCGGCAGCAGCTTTTTTGATGATGCAATCGTCATTTTACCTGCCGGATATAACTTTGAACACAATAGTTCCTGCCGGCGGCAATCTTAACCCCCCGGCAGGAACTTCATTTCTTGTCTGGTTGATACCAAAGTTCACTGTTGACTTTTTCCATGTCTTTTTCCATATTTGCATACTTGTAACGGGCCGGGCCGGGCTTTTTCCGGAATTTCGGAGGCCCGGCGGGCCCGTCATTTCATTAGTTTCGAAATTTTCAAAAAACACATAAGGGGGGACCCTTATGTGATTTTTTTCGACCAAAAAAGTTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACATACAAACAATCCGAAATACGAAAAAGAAAAATGGAAAAAATTACATTGAGAGCTCAAAATTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTATTAGAAATTTTGCCATTC</pcr_primer_p1>
		<pcr_primer_p2>GTAAAATGACGATTGCATCA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTTTATTAGAAATTTTGCCATTCGAGCATGTATACTGTCCCCGACCAAACGAAATTGTATACATCTTGAACAAGAATAAGAAATAAAAACAGTTACATCCACTTTTTACTATGAAATGAAAAGAACGACGAAGAAAACGAAGAAAATGAAAAAAAAAATCCAGCCGCGCGGAGCGTTGTTTAACCTGCTGGCAGGATCTTTTCCTTCTAGCCTGCCGGCAGCAGCTTTTTTGATGATGCAATCGTCATTTTAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTATTAGAAATTTTGCCATTCGAGCATGTATACTGTCCCCGACCAAACGAAATTGTATACATCTTGAACAAGAATAAGAAATAAAAACAGTTACATCCACTTTTTACTATGAAATRAAAAGAACGACGAAGAAAACGAAGAAAATGAAAAAAAAAATCCAGCCGCGCGGAGCGTTGTTTAACCTGCTGGCAGGATCTTTTCCTTCTAGCCTGCCGGCAGCAGCTTTTTTGATGATGCAATCGTCATTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28493</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>8302</contig_pos>
        <strand>+</strand>
        <context>GAAGAAAATG[C/T]AAAAAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCACTTTTTACTATGAAATGAAAAGAACGACGAAGAAAACGAAGAAAATG</left_flank>
        <right_flank>AAAAAAAAATCCAGCCGCGCGGAGCGTTGTTTAACCTGCTGGCAGGATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAAAACATAAATTGGGCATAAATTAGTATCATAAATATCAAAAAATAGGAAAAGGGATGTGACATAAATTGCGGGAATTATTTGTCAGCATCAAATTTTGGCATTCCGAGCCAAAGAATCGAATTTTTGGATCGTCTTTCATATGTTCCGAATGATTTGAGGAGCGTAGAAGACGATGAAGACGAATTCTGAAATATTAGGAATATTAGATTTTGCAAGCGAATAAAAGGAACTCACAGTCATCGATGATTCATTTTGTCGCTGGTGGTTGTCCTAACTTAGAATGATCGGCTCCAGCTCTGGACTATCTCCTGAAAAAAACTAGACAAATTAAAAAAAAGGTCATCATTTTATTAGAAATTTTGCCATTCGAGCATGTATACTGTCCCCGACCAAACGAAATTGTATACATCTTGAACAAGAATAAGAAATAAAAACAGTTACATCCACTTTTTACTATGAAATGAAAAGAACGACGAAGAAAACGAAGAAAATGAAAAAAAAAATCCAGCCGCGCGGAGCGTTGTTTAACCTGCTGGCAGGATCTTTTCCTTCTAGCCTGCCGGCAGCAGCTTTTTTGATGATGCAATCGTCATTTTACCTGCCGGATATAACTTTGAACACAATAGTTCCTGCCGGCGGCAATCTTAACCCCCCGGCAGGAACTTCATTTCTTGTCTGGTTGATACCAAAGTTCACTGTTGACTTTTTCCATGTCTTTTTCCATATTTGCATACTTGTAACGGGCCGGGCCGGGCTTTTTCCGGAATTTCGGAGGCCCGGCGGGCCCGTCATTTCATTAGTTTCGAAATTTTCAAAAAACACATAAGGGGGGACCCTTATGTGATTTTTTTCGACCAAAAAAGTTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACATACAAACAATCCGAAATACGAAAAAGAAAAATGGAAAAAATTACATTGAGAGCTCAAAATTTGGCTCAAAAATGCAGAATTTTTGACACCGGGCC</canonical>
            <polymorphic>TCAAAAAACATAAATTGGGCATAAATTAGTATCATAAATATCAAAAAATAGGAAAAGGGATGTGACATAAATTGCGGGAATTATTTGTCAGCATCAAATTTTGGCATTCCGAGCCAAAGAATCGAATTTTTGGATCGTCTTTCATATGTTCCGAATGATTTGAGGAGCGTAGAAGACGATGAAGACGAATTCTGAAATATTAGGAATATTAGATTTTGCAAGCGAATAAAAGGAACTCACAGTCATCGATGATTCATTTTGTCGCTGGTGGTTGTCCTAACTTAGAATGATCGGCTCCAGCTCTGGACTATCTCCTGAAAAAAACTAGACAAATTAAAAAAAAGGTCATCATTTTATTAGAAATTTTGCCATTCGAGCATGTATACTGTCCCCGACCAAACGAAATTGTATACATCTTGAACAAGAATAAGAAATAAAAACAGTTACATCCACTTTTTACTATGAAATGAAAAGAACGACGAAGAAAACGAAGAAAATGYAAAAAAAAATCCAGCCGCGCGGAGCGTTGTTTAACCTGCTGGCAGGATCTTTTCCTTCTAGCCTGCCGGCAGCAGCTTTTTTGATGATGCAATCGTCATTTTACCTGCCGGATATAACTTTGAACACAATAGTTCCTGCCGGCGGCAATCTTAACCCCCCGGCAGGAACTTCATTTCTTGTCTGGTTGATACCAAAGTTCACTGTTGACTTTTTCCATGTCTTTTTCCATATTTGCATACTTGTAACGGGCCGGGCCGGGCTTTTTCCGGAATTTCGGAGGCCCGGCGGGCCCGTCATTTCATTAGTTTCGAAATTTTCAAAAAACACATAAGGGGGGACCCTTATGTGATTTTTTTCGACCAAAAAAGTTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACATACAAACAATCCGAAATACGAAAAAGAAAAATGGAAAAAATTACATTGAGAGCTCAAAATTTGGCTCAAAAATGCAGAATTTTTGACACCGGGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTACATCCACTTTTTACTATGA</pcr_primer_p1>
		<pcr_primer_p2>TATCAACCAGACAAGAAATGAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAGTTACATCCACTTTTTACTATGAAATGAAAAGAACGACGAAGAAAACGAAGAAAATGAAAAAAAAAATCCAGCCGCGCGGAGCGTTGTTTAACCTGCTGGCAGGATCTTTTCCTTCTAGCCTGCCGGCAGCAGCTTTTTTGATGATGCAATCGTCATTTTACCTGCCGGATATAACTTTGAACACAATAGTTCCTGCCGGCGGCAATCTTAACCCCCCGGCAGGAACTTCATTTCTTGTCTGGTTGATA</canonical_amplicon>
		<polymorphic_amplicon>CAGTTACATCCACTTTTTACTATGAAATGAAAAGAACGACGAAGAAAACGAAGAAAATGYAAAAAAAAATCCAGCCGCGCGGAGCGTTGTTTAACCTGCTGGCAGGATCTTTTCCTTCTAGCCTGCCGGCAGCAGCTTTTTTGATGATGCAATCGTCATTTTACCTGCCGGATATAACTTTGAACACAATAGTTCCTGCCGGCGGCAATCTTAACCCCCCGGCAGGAACTTCATTTCTTGTCTGGTTGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28494</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>8330</contig_pos>
        <strand></strand>
        <context>CGCGGAGCGT[T/C]GTTTAACCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GACGAAGAAAACGAAGAAAATGAAAAAAAAAATCCAGCCGCGCGGAGCGT</left_flank>
        <right_flank>GTTTAACCTGCTGGCAGGATCTTTTCCTTCTAGCCTGCCGGCAGCAGCTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATCATAAATATCAAAAAATAGGAAAAGGGATGTGACATAAATTGCGGGAATTATTTGTCAGCATCAAATTTTGGCATTCCGAGCCAAAGAATCGAATTTTTGGATCGTCTTTCATATGTTCCGAATGATTTGAGGAGCGTAGAAGACGATGAAGACGAATTCTGAAATATTAGGAATATTAGATTTTGCAAGCGAATAAAAGGAACTCACAGTCATCGATGATTCATTTTGTCGCTGGTGGTTGTCCTAACTTAGAATGATCGGCTCCAGCTCTGGACTATCTCCTGAAAAAAACTAGACAAATTAAAAAAAAGGTCATCATTTTATTAGAAATTTTGCCATTCGAGCATGTATACTGTCCCCGACCAAACGAAATTGTATACATCTTGAACAAGAATAAGAAATAAAAACAGTTACATCCACTTTTTACTATGAAATGAAAAGAACGACGAAGAAAACGAAGAAAATGAAAAAAAAAATCCAGCCGCGCGGAGCGTTGTTTAACCTGCTGGCAGGATCTTTTCCTTCTAGCCTGCCGGCAGCAGCTTTTTTGATGATGCAATCGTCATTTTACCTGCCGGATATAACTTTGAACACAATAGTTCCTGCCGGCGGCAATCTTAACCCCCCGGCAGGAACTTCATTTCTTGTCTGGTTGATACCAAAGTTCACTGTTGACTTTTTCCATGTCTTTTTCCATATTTGCATACTTGTAACGGGCCGGGCCGGGCTTTTTCCGGAATTTCGGAGGCCCGGCGGGCCCGTCATTTCATTAGTTTCGAAATTTTCAAAAAACACATAAGGGGGGACCCTTATGTGATTTTTTTCGACCAAAAAAGTTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACATACAAACAATCCGAAATACGAAAAAGAAAAATGGAAAAAATTACATTGAGAGCTCAAAATTTGGCTCAAAAATGCAGAATTTTTGACACCGGGCCTTACGGGCCGGGCCCGGGCCTTGAAAAT</canonical>
            <polymorphic>GTATCATAAATATCAAAAAATAGGAAAAGGGATGTGACATAAATTGCGGGAATTATTTGTCAGCATCAAATTTTGGCATTCCGAGCCAAAGAATCGAATTTTTGGATCGTCTTTCATATGTTCCGAATGATTTGAGGAGCGTAGAAGACGATGAAGACGAATTCTGAAATATTAGGAATATTAGATTTTGCAAGCGAATAAAAGGAACTCACAGTCATCGATGATTCATTTTGTCGCTGGTGGTTGTCCTAACTTAGAATGATCGGCTCCAGCTCTGGACTATCTCCTGAAAAAAACTAGACAAATTAAAAAAAAGGTCATCATTTTATTAGAAATTTTGCCATTCGAGCATGTATACTGTCCCCGACCAAACGAAATTGTATACATCTTGAACAAGAATAAGAAATAAAAACAGTTACATCCACTTTTTACTATGAAATGAAAAGAACGACGAAGAAAACGAAGAAAATGAAAAAAAAAATCCAGCCGCGCGGAGCGTYGTTTAACCTGCTGGCAGGATCTTTTCCTTCTAGCCTGCCGGCAGCAGCTTTTTTGATGATGCAATCGTCATTTTACCTGCCGGATATAACTTTGAACACAATAGTTCCTGCCGGCGGCAATCTTAACCCCCCGGCAGGAACTTCATTTCTTGTCTGGTTGATACCAAAGTTCACTGTTGACTTTTTCCATGTCTTTTTCCATATTTGCATACTTGTAACGGGCCGGGCCGGGCTTTTTCCGGAATTTCGGAGGCCCGGCGGGCCCGTCATTTCATTAGTTTCGAAATTTTCAAAAAACACATAAGGGGGGACCCTTATGTGATTTTTTTCGACCAAAAAAGTTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACATACAAACAATCCGAAATACGAAAAAGAAAAATGGAAAAAATTACATTGAGAGCTCAAAATTTGGCTCAAAAATGCAGAATTTTTGACACCGGGCCTTACGGGCCGGGCCCGGGCCTTGAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACGAAGAAAACGAAGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGACATGGAAAAAGTCAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GACGAAGAAAACGAAGAAAATGAAAAAAAAAATCCAGCCGCGCGGAGCGTTGTTTAACCTGCTGGCAGGATCTTTTCCTTCTAGCCTGCCGGCAGCAGCTTTTTTGATGATGCAATCGTCATTTTACCTGCCGGATATAACTTTGAACACAATAGTTCCTGCCGGCGGCAATCTTAACCCCCCGGCAGGAACTTCATTTCTTGTCTGGTTGATACCAAAGTTCACTGTTGACTTTTTCCATGTCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GACGAAGAAAACGAAGAAAATGAAAAAAAAAATCCAGCCGCGCGGAGCGTYGTTTAACCTGCTGGCAGGATCTTTTCCTTCTAGCCTGCCGGCAGCAGCTTTTTTGATGATGCAATCGTCATTTTACCTGCCGGATATAACTTTGAACACAATAGTTCCTGCCGGCGGCAATCTTAACCCCCCGGCAGGAACTTCATTTCTTGTCTGGTTGATACCAAAGTTCACTGTTGACTTTTTCCATGTCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28495</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>11420</contig_pos>
        <strand>+</strand>
        <context>ATTTTAACAC[A/G]AAWCAGATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTTTCTGAGATTCTACTTCACAAATTCCCAAAATTAAAAATTTTAACAC</left_flank>
        <right_flank>AATCAGATTTTCAGAATTTTCTCTAAAACACATTTCTGAGTTTTTGATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGGCTACAATCTCCTGGCTTCACTAAAAACGTTTGAAACTCCGAATCGGAGAGAATCAGAAGAGGAAGTTTTAGTTGATTGTGTTGTCAACTTTCATAAACTGGAGTGACAGTCTGCTTATGCGCCTTCGGGGCTAAACCTTCTGGCTCCCGCTTACAACAGCCTTAACCGATTGAGTTTGGGCTTGGACAGATAAATCAGAAATGTGTCTTACATTAGTTGAGACACGAACTGTTCAAAATTTCCAAATTTTTAGAACTAATAATTTTCCTGAATTCCCAAATATCTTGAAATTTGACAACTTATAATTCTTTCAGAAGTTTCGAAATTCAGGAGTCCTGAATTTTCGGAACTGCGATTCTAGGACTCAAAGATTTTTCTATTAAAAAACTTCATTTCAGAACTCATAATTTCTGAAATTTCGTATTTTTGAGTTTCCGTATTTCCGACTTTCTGAGATTCTACTTCACAAATTCCCAAAATTAAAAATTTTAACACAAATCAGATTTTCAGAATTTTCTCTAAAACACATTTCTGAGTTTTTGATTCACAAAGTTTATGAATTTCCGAAGTTTCTTAATTCCGAACTTGGGCTTTCTGATATTCTGAACTTCTGAGTTTCTGGTTTTTCTGGTTTTTTGCTTTCGAGATTTTGGATTTTCAAAATTTCGAGTGTTCTAACTTTCAAATTGTTTAATTTCGTAATATTCCGAATATCTGAATTTTTATACTTCTGGATTTCCGAAACATTGGACATTTGAATTCTCTGATTTTCAAACTTCAAATCTCGGTGTTTTCGAGTTCCCGTTTTTCCAATTTTCCGAATTTCTGAATTAGAATTTTAGAATTTCAGAGTGAAACCAAAATGTTTGAAGCATAGAAAGGTTAGAAATTTCGCAAAAAAATAATCAAATTTCGTGAATCAGAATCTCCGAAATTCAGTTTTTGAGAAGTTAGGGGATTCAGAAAGTCAGAATTTTAAAGTGTCCTGAACTTTTT</canonical>
            <polymorphic>GCGGCTACAATCTCCTGGCTTCACTAAAAACGTTTGAAACTCCGAATCGGAGAGAATCAGAAGAGGAAGTTTTAGTTGATTGTGTTGTCAACTTTCATAAACTGGAGTGACAGTCTGCTTATGCGCCTTCGGGGCTAAACCTTCTGGCTCCCGCTTACAACAGCCTTAACCGATTGAGTTTGGGCTTGGACAGATAAATCAGAAATGTGTCTTACATTAGTTGAGACACGAACTGTTCAAAATTTCCAAATTTTTAGAACTAATAATTTTCCTGAATTCCCAAATATCTTGAAATTTGACAACTTATAATTCTTTCAGAAGTTTCGAAATTCAGGAGTCCTGAATTTTCGGAACTGCGATTCTAGGACTCAAAGATTTTTCTATTAAAAAACTTCATTTCAGAACTCATAATTTCTGAAATTTCGTATTTTTGAGTTTCCGTATTTCCGACTTTCTGAGATTCTACTTCACAAATTCCCAAAATTAAAAATTTTAACACRAATCAGATTTTCAGAATTTTCTCTAAAACACATTTCTGAGTTTTTGATTCACAAAGTTTATGAATTTCCGAAGTTTCTTAATTCCGAACTTGGGCTTTCTGATATTCTGAACTTCTGAGTTTCTGGTTTTTCTGGTTTTTTGCTTTCGAGATTTTGGATTTTCAAAATTTCGAGTGTTCTAACTTTCAAATTGTTTAATTTCGTAATATTCCGAATATCTGAATTTTTATACTTCTGGATTTCCGAAACATTGGACATTTGAATTCTCTGATTTTCAAACTTCAAATCTCGGTGTTTTCGAGTTCCCGTTTTTCCAATTTTCCGAATTTCTGAATTAGAATTTTAGAATTTCAGAGTGAAACCAAAATGTTTGAAGCATAGAAAGGTTAGAAATTTCGCAAAAAAATAATCAAATTTCGTGAATCAGAATCTCCGAAATTCAGTTTTTGAGAAGTTAGGGGATTCAGAAAGTCAGAATTTTAAAGTGTCCTGAACTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGACTTTCTGAGATTCTACTTCA</pcr_primer_p1>
		<pcr_primer_p2>CGAAATTAAACAATTTGAAAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CGACTTTCTGAGATTCTACTTCACAAATTCCCAAAATTAAAAATTTTAACACAAATCAGATTTTCAGAATTTTCTCTAAAACACATTTCTGAGTTTTTGATTCACAAAGTTTATGAATTTCCGAAGTTTCTTAATTCCGAACTTGGGCTTTCTGATATTCTGAACTTCTGAGTTTCTGGTTTTTCTGGTTTTTTGCTTTCGAGATTTTGGATTTTCAAAATTTCGAGTGTTCTAACTTTCAAATTGTTTAATTTCG</canonical_amplicon>
		<polymorphic_amplicon>CGACTTTCTGAGATTCTACTTCACAAATTCCCAAAATTAAAAATTTTAACACRAATCAGATTTTCAGAATTTTCTCTAAAACACATTTCTGAGTTTTTGATTCACAAAGTTTATGAATTTCCGAAGTTTCTTAATTCCGAACTTGGGCTTTCTGATATTCTGAACTTCTGAGTTTCTGGTTTTTCTGGTTTTTTGCTTTCGAGATTTTGGATTTTCAAAATTTCGAGTGTTCTAACTTTCAAATTGTTTAATTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28496</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>11423</contig_pos>
        <strand>+</strand>
        <context>TTAACACRAA[A/T]CAGATTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCTGAGATTCTACTTCACAAATTCCCAAAATTAAAAATTTTAACACAAA</left_flank>
        <right_flank>CAGATTTTCAGAATTTTCTCTAAAACACATTTCTGAGTTTTTGATTCACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTACAATCTCCTGGCTTCACTAAAAACGTTTGAAACTCCGAATCGGAGAGAATCAGAAGAGGAAGTTTTAGTTGATTGTGTTGTCAACTTTCATAAACTGGAGTGACAGTCTGCTTATGCGCCTTCGGGGCTAAACCTTCTGGCTCCCGCTTACAACAGCCTTAACCGATTGAGTTTGGGCTTGGACAGATAAATCAGAAATGTGTCTTACATTAGTTGAGACACGAACTGTTCAAAATTTCCAAATTTTTAGAACTAATAATTTTCCTGAATTCCCAAATATCTTGAAATTTGACAACTTATAATTCTTTCAGAAGTTTCGAAATTCAGGAGTCCTGAATTTTCGGAACTGCGATTCTAGGACTCAAAGATTTTTCTATTAAAAAACTTCATTTCAGAACTCATAATTTCTGAAATTTCGTATTTTTGAGTTTCCGTATTTCCGACTTTCTGAGATTCTACTTCACAAATTCCCAAAATTAAAAATTTTAACACAAATCAGATTTTCAGAATTTTCTCTAAAACACATTTCTGAGTTTTTGATTCACAAAGTTTATGAATTTCCGAAGTTTCTTAATTCCGAACTTGGGCTTTCTGATATTCTGAACTTCTGAGTTTCTGGTTTTTCTGGTTTTTTGCTTTCGAGATTTTGGATTTTCAAAATTTCGAGTGTTCTAACTTTCAAATTGTTTAATTTCGTAATATTCCGAATATCTGAATTTTTATACTTCTGGATTTCCGAAACATTGGACATTTGAATTCTCTGATTTTCAAACTTCAAATCTCGGTGTTTTCGAGTTCCCGTTTTTCCAATTTTCCGAATTTCTGAATTAGAATTTTAGAATTTCAGAGTGAAACCAAAATGTTTGAAGCATAGAAAGGTTAGAAATTTCGCAAAAAAATAATCAAATTTCGTGAATCAGAATCTCCGAAATTCAGTTTTTGAGAAGTTAGGGGATTCAGAAAGTCAGAATTTTAAAGTGTCCTGAACTTTTTCTT</canonical>
            <polymorphic>GCTACAATCTCCTGGCTTCACTAAAAACGTTTGAAACTCCGAATCGGAGAGAATCAGAAGAGGAAGTTTTAGTTGATTGTGTTGTCAACTTTCATAAACTGGAGTGACAGTCTGCTTATGCGCCTTCGGGGCTAAACCTTCTGGCTCCCGCTTACAACAGCCTTAACCGATTGAGTTTGGGCTTGGACAGATAAATCAGAAATGTGTCTTACATTAGTTGAGACACGAACTGTTCAAAATTTCCAAATTTTTAGAACTAATAATTTTCCTGAATTCCCAAATATCTTGAAATTTGACAACTTATAATTCTTTCAGAAGTTTCGAAATTCAGGAGTCCTGAATTTTCGGAACTGCGATTCTAGGACTCAAAGATTTTTCTATTAAAAAACTTCATTTCAGAACTCATAATTTCTGAAATTTCGTATTTTTGAGTTTCCGTATTTCCGACTTTCTGAGATTCTACTTCACAAATTCCCAAAATTAAAAATTTTAACACAAAWCAGATTTTCAGAATTTTCTCTAAAACACATTTCTGAGTTTTTGATTCACAAAGTTTATGAATTTCCGAAGTTTCTTAATTCCGAACTTGGGCTTTCTGATATTCTGAACTTCTGAGTTTCTGGTTTTTCTGGTTTTTTGCTTTCGAGATTTTGGATTTTCAAAATTTCGAGTGTTCTAACTTTCAAATTGTTTAATTTCGTAATATTCCGAATATCTGAATTTTTATACTTCTGGATTTCCGAAACATTGGACATTTGAATTCTCTGATTTTCAAACTTCAAATCTCGGTGTTTTCGAGTTCCCGTTTTTCCAATTTTCCGAATTTCTGAATTAGAATTTTAGAATTTCAGAGTGAAACCAAAATGTTTGAAGCATAGAAAGGTTAGAAATTTCGCAAAAAAATAATCAAATTTCGTGAATCAGAATCTCCGAAATTCAGTTTTTGAGAAGTTAGGGGATTCAGAAAGTCAGAATTTTAAAGTGTCCTGAACTTTTTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>142 116 96 73 54 51 49 40 33 32 32 32 29 25 24 24 22 16 15 15 10 8 8 8 8 8 8 8 8 6</canonical_bands>
                <polymorphic_bands>142 116 96 73 57 54 51 40 33 32 32 32 29 25 24 24 22 16 15 15 10 8 8 8 8 8 8 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGACTTTCTGAGATTCTACTTCA</pcr_primer_p1>
		<pcr_primer_p2>CGAAATTAAACAATTTGAAAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CGACTTTCTGAGATTCTACTTCACAAATTCCCAAAATTAAAAATTTTAACACAAATCAGATTTTCAGAATTTTCTCTAAAACACATTTCTGAGTTTTTGATTCACAAAGTTTATGAATTTCCGAAGTTTCTTAATTCCGAACTTGGGCTTTCTGATATTCTGAACTTCTGAGTTTCTGGTTTTTCTGGTTTTTTGCTTTCGAGATTTTGGATTTTCAAAATTTCGAGTGTTCTAACTTTCAAATTGTTTAATTTCG</canonical_amplicon>
		<polymorphic_amplicon>CGACTTTCTGAGATTCTACTTCACAAATTCCCAAAATTAAAAATTTTAACACAAAWCAGATTTTCAGAATTTTCTCTAAAACACATTTCTGAGTTTTTGATTCACAAAGTTTATGAATTTCCGAAGTTTCTTAATTCCGAACTTGGGCTTTCTGATATTCTGAACTTCTGAGTTTCTGGTTTTTCTGGTTTTTTGCTTTCGAGATTTTGGATTTTCAAAATTTCGAGTGTTCTAACTTTCAAATTGTTTAATTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28497</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>11527</contig_pos>
        <strand>+</strand>
        <context>TTCTGATATT[C/T]TGAACTTCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTATGAATTTCCGAAGTTTCTTAATTCCGAACTTGGGCTTTCTGATATT</left_flank>
        <right_flank>TGAACTTCTGAGTTTCTGGTTTTTCTGGTTTTTTGCTTTCGAGATTTTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACAGTCTGCTTATGCGCCTTCGGGGCTAAACCTTCTGGCTCCCGCTTACAACAGCCTTAACCGATTGAGTTTGGGCTTGGACAGATAAATCAGAAATGTGTCTTACATTAGTTGAGACACGAACTGTTCAAAATTTCCAAATTTTTAGAACTAATAATTTTCCTGAATTCCCAAATATCTTGAAATTTGACAACTTATAATTCTTTCAGAAGTTTCGAAATTCAGGAGTCCTGAATTTTCGGAACTGCGATTCTAGGACTCAAAGATTTTTCTATTAAAAAACTTCATTTCAGAACTCATAATTTCTGAAATTTCGTATTTTTGAGTTTCCGTATTTCCGACTTTCTGAGATTCTACTTCACAAATTCCCAAAATTAAAAATTTTAACACAAATCAGATTTTCAGAATTTTCTCTAAAACACATTTCTGAGTTTTTGATTCACAAAGTTTATGAATTTCCGAAGTTTCTTAATTCCGAACTTGGGCTTTCTGATATTCTGAACTTCTGAGTTTCTGGTTTTTCTGGTTTTTTGCTTTCGAGATTTTGGATTTTCAAAATTTCGAGTGTTCTAACTTTCAAATTGTTTAATTTCGTAATATTCCGAATATCTGAATTTTTATACTTCTGGATTTCCGAAACATTGGACATTTGAATTCTCTGATTTTCAAACTTCAAATCTCGGTGTTTTCGAGTTCCCGTTTTTCCAATTTTCCGAATTTCTGAATTAGAATTTTAGAATTTCAGAGTGAAACCAAAATGTTTGAAGCATAGAAAGGTTAGAAATTTCGCAAAAAAATAATCAAATTTCGTGAATCAGAATCTCCGAAATTCAGTTTTTGAGAAGTTAGGGGATTCAGAAAGTCAGAATTTTAAAGTGTCCTGAACTTTTTCTTTCTCTCTTCTTTCAAAACTAAGACTAAATAATTATTTTCACGAAATCACCTTTTTATCAGATATAGTGTGGATAAGAAAAAAAATAGAGGGGTTGGACGGAAGT</canonical>
            <polymorphic>TGACAGTCTGCTTATGCGCCTTCGGGGCTAAACCTTCTGGCTCCCGCTTACAACAGCCTTAACCGATTGAGTTTGGGCTTGGACAGATAAATCAGAAATGTGTCTTACATTAGTTGAGACACGAACTGTTCAAAATTTCCAAATTTTTAGAACTAATAATTTTCCTGAATTCCCAAATATCTTGAAATTTGACAACTTATAATTCTTTCAGAAGTTTCGAAATTCAGGAGTCCTGAATTTTCGGAACTGCGATTCTAGGACTCAAAGATTTTTCTATTAAAAAACTTCATTTCAGAACTCATAATTTCTGAAATTTCGTATTTTTGAGTTTCCGTATTTCCGACTTTCTGAGATTCTACTTCACAAATTCCCAAAATTAAAAATTTTAACACAAATCAGATTTTCAGAATTTTCTCTAAAACACATTTCTGAGTTTTTGATTCACAAAGTTTATGAATTTCCGAAGTTTCTTAATTCCGAACTTGGGCTTTCTGATATTYTGAACTTCTGAGTTTCTGGTTTTTCTGGTTTTTTGCTTTCGAGATTTTGGATTTTCAAAATTTCGAGTGTTCTAACTTTCAAATTGTTTAATTTCGTAATATTCCGAATATCTGAATTTTTATACTTCTGGATTTCCGAAACATTGGACATTTGAATTCTCTGATTTTCAAACTTCAAATCTCGGTGTTTTCGAGTTCCCGTTTTTCCAATTTTCCGAATTTCTGAATTAGAATTTTAGAATTTCAGAGTGAAACCAAAATGTTTGAAGCATAGAAAGGTTAGAAATTTCGCAAAAAAATAATCAAATTTCGTGAATCAGAATCTCCGAAATTCAGTTTTTGAGAAGTTAGGGGATTCAGAAAGTCAGAATTTTAAAGTGTCCTGAACTTTTTCTTTCTCTCTTCTTTCAAAACTAAGACTAAATAATTATTTTCACGAAATCACCTTTTTATCAGATATAGTGTGGATAAGAAAAAAAATAGAGGGGTTGGACGGAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>116 96 94 88 73 54 51 49 45 33 32 32 32 25 24 24 22 16 15 15 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>116 96 94 88 73 54 51 49 45 33 32 32 32 25 24 24 22 16 16 15 15 8 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACTTCACAAATTCCCAAAATTA</pcr_primer_p1>
		<pcr_primer_p2>CGGAATATTACGAAATTAAACAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACTTCACAAATTCCCAAAATTAAAAATTTTAACACAAATCAGATTTTCAGAATTTTCTCTAAAACACATTTCTGAGTTTTTGATTCACAAAGTTTATGAATTTCCGAAGTTTCTTAATTCCGAACTTGGGCTTTCTGATATTCTGAACTTCTGAGTTTCTGGTTTTTCTGGTTTTTTGCTTTCGAGATTTTGGATTTTCAAAATTTCGAGTGTTCTAACTTTCAAATTGTTTAATTTCGTAATATTCCG</canonical_amplicon>
		<polymorphic_amplicon>TACTTCACAAATTCCCAAAATTAAAAATTTTAACACAAATCAGATTTTCAGAATTTTCTCTAAAACACATTTCTGAGTTTTTGATTCACAAAGTTTATGAATTTCCGAAGTTTCTTAATTCCGAACTTGGGCTTTCTGATATTYTGAACTTCTGAGTTTCTGGTTTTTCTGGTTTTTTGCTTTCGAGATTTTGGATTTTCAAAATTTCGAGTGTTCTAACTTTCAAATTGTTTAATTTCGTAATATTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28498</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>79608</contig_pos>
        <strand>+</strand>
        <context>ATTCCAATTC[C/T]TCATTTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTAGTGCACAAAAACTGAATCTTTCAAAAAAAAAACGAGATTCCAATTC</left_flank>
        <right_flank>TCATTTTTTTCCAGAAAATTAAACTAAATAAAAAATTCCCGCCGGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTAAAAAAATTCGGGTCCATCATTTTTTTTTTCCATATAACTGTACTAAAGTAAGAACAATCGAAAGTTGCATCAGAATTACAGAACTCTCAATTTTGATATTGAGAGCTAAATTTTTTGATTAGATCACAAACGAAAATTCTAAATGTATAAATTTCTGTTTCGGAAGGTTTATAAGTTTTTCAGAAAAATTTTTGGTTAAATAATATTCTTGGTAATTGCGAAGCTATTTGACTAAATATAGAAGATGGAATTGATACTTGCGTACTGTAACTTAAGAAAAAAATCATTAAAATCGCCTGTCTCCTCTCTTTCTTATGAGGTTATTCAGGGAGTCGGCAAAAAAGGAAAAAAAAACTCCGCGAAAACTCGGAGAGTGTTCCAATCTGGCTGAAACTTTGGGGAAAATTGGNNNNNNNNNNTGCTTACGGTGATGTCTCGAAAAAACTAGTGCACAAAAACTGAATCTTTCAAAAAAAAAACGAGATTCCAATTCTTCATTTTTTTCCAGAAAATTAAACTAAATAAAAAATTCCCGCCGGAAAAATAGCATGTCTTTCAAAAAAGGGGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCCGCAAGATAAACCCATCTACCAAATGGGCTCTTTTTTGGAGGATGGGGGGAAATTTGCACTGCTCAGACTGGATTAGGTTACTAATTGAATTTCTGAATTCTGGTCTCTTTATTTTTTAGTTTAGCCAGAAAAAAGGAAAGAAAAAACAACAAAATAAAGAAGAAGAATTTATTAAAACGAGCAGTTTTTTTTGAGAAAATTTGGCATACATTGAAAACTTTTTAAAGGCAAAAACCGGTTTACACACATTTTAAGACACTAGATTCTAGCAAAACATTAGGAGAAAAAAGGAAAATAAAAGCTCTAATGTAAGTATTATTTAAATAAGTATCTATCCAAAAATATGGGTCGAATCAGAGAAA</canonical>
            <polymorphic>TGTTTAAAAAAATTCGGGTCCATCATTTTTTTTTTCCATATAACTGTACTAAAGTAAGAACAATCGAAAGTTGCATCAGAATTACAGAACTCTCAATTTTGATATTGAGAGCTAAATTTTTTGATTAGATCACAAACGAAAATTCTAAATGTATAAATTTCTGTTTCGGAAGGTTTATAAGTTTTTCAGAAAAATTTTTGGTTAAATAATATTCTTGGTAATTGCGAAGCTATTTGACTAAATATAGAAGATGGAATTGATACTTGCGTACTGTAACTTAAGAAAAAAATCATTAAAATCGCCTGTCTCCTCTCTTTCTTATGAGGTTATTCAGGGAGTCGGCAAAAAAGGAAAAAAAAACTCCGCGAAAACTCGGAGAGTGTTCCAATCTGGCTGAAACTTTGGGGAAAATTGGNNNNNNNNNNTGCTTACGGTGATGTCTCGAAAAAACTAGTGCACAAAAACTGAATCTTTCAAAAAAAAAACGAGATTCCAATTCYTCATTTTTTTCCAGAAAATTAAACTAAATAAAAAATTCCCGCCGGAAAAATAGCATGTCTTTCAAAAAAGGGGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCCGCAAGATAAACCCATCTACCAAATGGGCTCTTTTTTGGAGGATGGGGGGAAATTTGCACTGCTCAGACTGGATTAGGTTACTAATTGAATTTCTGAATTCTGGTCTCTTTATTTTTTAGTTTAGCCAGAAAAAAGGAAAGAAAAAACAACAAAATAAAGAAGAAGAATTTATTAAAACGAGCAGTTTTTTTTGAGAAAATTTGGCATACATTGAAAACTTTTTAAAGGCAAAAACCGGTTTACACACATTTTAAGACACTAGATTCTAGCAAAACATTAGGAGAAAAAAGGAAAATAAAAGCTCTAATGTAAGTATTATTTAAATAAGTATCTATCCAAAAATATGGGTCGAATCAGAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTAGTGCACAAAAACTGA</pcr_primer_p1>
		<pcr_primer_p2>CATTTGGTAGATGGGTTTATCT</pcr_primer_p2>
		<pcr_amplicon_size>218</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTAGTGCACAAAAACTGAATCTTTCAAAAAAAAAACGAGATTCCAATTCTTCATTTTTTTCCAGAAAATTAAACTAAATAAAAAATTCCCGCCGGAAAAATAGCATGTCTTTCAAAAAAGGGGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCCGCAAGATAAACCCATCTACCAAATG</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTAGTGCACAAAAACTGAATCTTTCAAAAAAAAAACGAGATTCCAATTCYTCATTTTTTTCCAGAAAATTAAACTAAATAAAAAATTCCCGCCGGAAAAATAGCATGTCTTTCAAAAAAGGGGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCCGCAAGATAAACCCATCTACCAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28499</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>79626</contig_pos>
        <strand>+</strand>
        <context>TTTCCAGAAA[A/C]TTAAACTAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATCTTTCAAAAAAAAAACGAGATTCCAATTCTTCATTTTTTTCCAGAAA</left_flank>
        <right_flank>TTAAACTAAATAAAAAATTCCCGCCGGAAAAATAGCATGTCTTTCAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCATCATTTTTTTTTTCCATATAACTGTACTAAAGTAAGAACAATCGAAAGTTGCATCAGAATTACAGAACTCTCAATTTTGATATTGAGAGCTAAATTTTTTGATTAGATCACAAACGAAAATTCTAAATGTATAAATTTCTGTTTCGGAAGGTTTATAAGTTTTTCAGAAAAATTTTTGGTTAAATAATATTCTTGGTAATTGCGAAGCTATTTGACTAAATATAGAAGATGGAATTGATACTTGCGTACTGTAACTTAAGAAAAAAATCATTAAAATCGCCTGTCTCCTCTCTTTCTTATGAGGTTATTCAGGGAGTCGGCAAAAAAGGAAAAAAAAACTCCGCGAAAACTCGGAGAGTGTTCCAATCTGGCTGAAACTTTGGGGAAAATTGGNNNNNNNNNNTGCTTACGGTGATGTCTCGAAAAAACTAGTGCACAAAAACTGAATCTTTCAAAAAAAAAACGAGATTCCAATTCTTCATTTTTTTCCAGAAAATTAAACTAAATAAAAAATTCCCGCCGGAAAAATAGCATGTCTTTCAAAAAAGGGGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCCGCAAGATAAACCCATCTACCAAATGGGCTCTTTTTTGGAGGATGGGGGGAAATTTGCACTGCTCAGACTGGATTAGGTTACTAATTGAATTTCTGAATTCTGGTCTCTTTATTTTTTAGTTTAGCCAGAAAAAAGGAAAGAAAAAACAACAAAATAAAGAAGAAGAATTTATTAAAACGAGCAGTTTTTTTTGAGAAAATTTGGCATACATTGAAAACTTTTTAAAGGCAAAAACCGGTTTACACACATTTTAAGACACTAGATTCTAGCAAAACATTAGGAGAAAAAAGGAAAATAAAAGCTCTAATGTAAGTATTATTTAAATAAGTATCTATCCAAAAATATGGGTCGAATCAGAGAAATGTACATGTATTGTTGAG</canonical>
            <polymorphic>TCCATCATTTTTTTTTTCCATATAACTGTACTAAAGTAAGAACAATCGAAAGTTGCATCAGAATTACAGAACTCTCAATTTTGATATTGAGAGCTAAATTTTTTGATTAGATCACAAACGAAAATTCTAAATGTATAAATTTCTGTTTCGGAAGGTTTATAAGTTTTTCAGAAAAATTTTTGGTTAAATAATATTCTTGGTAATTGCGAAGCTATTTGACTAAATATAGAAGATGGAATTGATACTTGCGTACTGTAACTTAAGAAAAAAATCATTAAAATCGCCTGTCTCCTCTCTTTCTTATGAGGTTATTCAGGGAGTCGGCAAAAAAGGAAAAAAAAACTCCGCGAAAACTCGGAGAGTGTTCCAATCTGGCTGAAACTTTGGGGAAAATTGGNNNNNNNNNNTGCTTACGGTGATGTCTCGAAAAAACTAGTGCACAAAAACTGAATCTTTCAAAAAAAAAACGAGATTCCAATTCTTCATTTTTTTCCAGAAAMTTAAACTAAATAAAAAATTCCCGCCGGAAAAATAGCATGTCTTTCAAAAAAGGGGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCCGCAAGATAAACCCATCTACCAAATGGGCTCTTTTTTGGAGGATGGGGGGAAATTTGCACTGCTCAGACTGGATTAGGTTACTAATTGAATTTCTGAATTCTGGTCTCTTTATTTTTTAGTTTAGCCAGAAAAAAGGAAAGAAAAAACAACAAAATAAAGAAGAAGAATTTATTAAAACGAGCAGTTTTTTTTGAGAAAATTTGGCATACATTGAAAACTTTTTAAAGGCAAAAACCGGTTTACACACATTTTAAGACACTAGATTCTAGCAAAACATTAGGAGAAAAAAGGAAAATAAAAGCTCTAATGTAAGTATTATTTAAATAAGTATCTATCCAAAAATATGGGTCGAATCAGAGAAATGTACATGTATTGTTGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>183 155 85 72 70 61 58 37 35 32 32 27 26 25 22 20 17 15 15 8 5</canonical_bands>
                <polymorphic_bands>183 155 85 72 70 61 58 39 37 35 32 32 27 26 25 20 15 15 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTAGTGCACAAAAACTGAATC</pcr_primer_p1>
		<pcr_primer_p2>CATTTGGTAGATGGGTTTATCT</pcr_primer_p2>
		<pcr_amplicon_size>215</pcr_amplicon_size>
		<canonical_amplicon>AACTAGTGCACAAAAACTGAATCTTTCAAAAAAAAAACGAGATTCCAATTCTTCATTTTTTTCCAGAAAATTAAACTAAATAAAAAATTCCCGCCGGAAAAATAGCATGTCTTTCAAAAAAGGGGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCCGCAAGATAAACCCATCTACCAAATG</canonical_amplicon>
		<polymorphic_amplicon>AACTAGTGCACAAAAACTGAATCTTTCAAAAAAAAAACGAGATTCCAATTCTTCATTTTTTTCCAGAAAMTTAAACTAAATAAAAAATTCCCGCCGGAAAAATAGCATGTCTTTCAAAAAAGGGGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCCGCAAGATAAACCCATCTACCAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28500</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>79677</contig_pos>
        <strand>+</strand>
        <context>CTTTCAAAAA[C/T]GGGGTCTATG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAACTAAATAAAAAATTCCCGCCGGAAAAATAGCATGTCTTTCAAAAA</left_flank>
        <right_flank>GGGGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGCATCAGAATTACAGAACTCTCAATTTTGATATTGAGAGCTAAATTTTTTGATTAGATCACAAACGAAAATTCTAAATGTATAAATTTCTGTTTCGGAAGGTTTATAAGTTTTTCAGAAAAATTTTTGGTTAAATAATATTCTTGGTAATTGCGAAGCTATTTGACTAAATATAGAAGATGGAATTGATACTTGCGTACTGTAACTTAAGAAAAAAATCATTAAAATCGCCTGTCTCCTCTCTTTCTTATGAGGTTATTCAGGGAGTCGGCAAAAAAGGAAAAAAAAACTCCGCGAAAACTCGGAGAGTGTTCCAATCTGGCTGAAACTTTGGGGAAAATTGGNNNNNNNNNNTGCTTACGGTGATGTCTCGAAAAAACTAGTGCACAAAAACTGAATCTTTCAAAAAAAAAACGAGATTCCAATTCTTCATTTTTTTCCAGAAAATTAAACTAAATAAAAAATTCCCGCCGGAAAAATAGCATGTCTTTCAAAAAAGGGGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCCGCAAGATAAACCCATCTACCAAATGGGCTCTTTTTTGGAGGATGGGGGGAAATTTGCACTGCTCAGACTGGATTAGGTTACTAATTGAATTTCTGAATTCTGGTCTCTTTATTTTTTAGTTTAGCCAGAAAAAAGGAAAGAAAAAACAACAAAATAAAGAAGAAGAATTTATTAAAACGAGCAGTTTTTTTTGAGAAAATTTGGCATACATTGAAAACTTTTTAAAGGCAAAAACCGGTTTACACACATTTTAAGACACTAGATTCTAGCAAAACATTAGGAGAAAAAAGGAAAATAAAAGCTCTAATGTAAGTATTATTTAAATAAGTATCTATCCAAAAATATGGGTCGAATCAGAGAAATGTACATGTATTGTTGAGAAGAGAGAGAGAGAGAAGAACCAAAAAGGAGGGATACAGTTGATTTTTTTA</canonical>
            <polymorphic>GTTGCATCAGAATTACAGAACTCTCAATTTTGATATTGAGAGCTAAATTTTTTGATTAGATCACAAACGAAAATTCTAAATGTATAAATTTCTGTTTCGGAAGGTTTATAAGTTTTTCAGAAAAATTTTTGGTTAAATAATATTCTTGGTAATTGCGAAGCTATTTGACTAAATATAGAAGATGGAATTGATACTTGCGTACTGTAACTTAAGAAAAAAATCATTAAAATCGCCTGTCTCCTCTCTTTCTTATGAGGTTATTCAGGGAGTCGGCAAAAAAGGAAAAAAAAACTCCGCGAAAACTCGGAGAGTGTTCCAATCTGGCTGAAACTTTGGGGAAAATTGGNNNNNNNNNNTGCTTACGGTGATGTCTCGAAAAAACTAGTGCACAAAAACTGAATCTTTCAAAAAAAAAACGAGATTCCAATTCTTCATTTTTTTCCAGAAAATTAAACTAAATAAAAAATTCCCGCCGGAAAAATAGCATGTCTTTCAAAAAYGGGGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCCGCAAGATAAACCCATCTACCAAATGGGCTCTTTTTTGGAGGATGGGGGGAAATTTGCACTGCTCAGACTGGATTAGGTTACTAATTGAATTTCTGAATTCTGGTCTCTTTATTTTTTAGTTTAGCCAGAAAAAAGGAAAGAAAAAACAACAAAATAAAGAAGAAGAATTTATTAAAACGAGCAGTTTTTTTTGAGAAAATTTGGCATACATTGAAAACTTTTTAAAGGCAAAAACCGGTTTACACACATTTTAAGACACTAGATTCTAGCAAAACATTAGGAGAAAAAAGGAAAATAAAAGCTCTAATGTAAGTATTATTTAAATAAGTATCTATCCAAAAATATGGGTCGAATCAGAGAAATGTACATGTATTGTTGAGAAGAGAGAGAGAGAGAAGAACCAAAAAGGAGGGATACAGTTGATTTTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTAGTGCACAAAAACTGAATC</pcr_primer_p1>
		<pcr_primer_p2>CATTTGGTAGATGGGTTTATCT</pcr_primer_p2>
		<pcr_amplicon_size>215</pcr_amplicon_size>
		<canonical_amplicon>AACTAGTGCACAAAAACTGAATCTTTCAAAAAAAAAACGAGATTCCAATTCTTCATTTTTTTCCAGAAAATTAAACTAAATAAAAAATTCCCGCCGGAAAAATAGCATGTCTTTCAAAAAAGGGGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCCGCAAGATAAACCCATCTACCAAATG</canonical_amplicon>
		<polymorphic_amplicon>AACTAGTGCACAAAAACTGAATCTTTCAAAAAAAAAACGAGATTCCAATTCTTCATTTTTTTCCAGAAAATTAAACTAAATAAAAAATTCCCGCCGGAAAAATAGCATGTCTTTCAAAAAYGGGGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCCGCAAGATAAACCCATCTACCAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28501</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>79821</contig_pos>
        <strand>+</strand>
        <context>AGACTGGATT[C/T]GGTTACTAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGCTCTTTTTTGGAGGATGGGGGGAAATTTGCACTGCTCAGACTGGATT</left_flank>
        <right_flank>GGTTACTAATTGAATTTCTGAATTCTGGTCTCTTTATTTTTTAGTTTAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGGTAATTGCGAAGCTATTTGACTAAATATAGAAGATGGAATTGATACTTGCGTACTGTAACTTAAGAAAAAAATCATTAAAATCGCCTGTCTCCTCTCTTTCTTATGAGGTTATTCAGGGAGTCGGCAAAAAAGGAAAAAAAAACTCCGCGAAAACTCGGAGAGTGTTCCAATCTGGCTGAAACTTTGGGGAAAATTGGNNNNNNNNNNTGCTTACGGTGATGTCTCGAAAAAACTAGTGCACAAAAACTGAATCTTTCAAAAAAAAAACGAGATTCCAATTCTTCATTTTTTTCCAGAAAATTAAACTAAATAAAAAATTCCCGCCGGAAAAATAGCATGTCTTTCAAAAAAGGGGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCCGCAAGATAAACCCATCTACCAAATGGGCTCTTTTTTGGAGGATGGGGGGAAATTTGCACTGCTCAGACTGGATTAGGTTACTAATTGAATTTCTGAATTCTGGTCTCTTTATTTTTTAGTTTAGCCAGAAAAAAGGAAAGAAAAAACAACAAAATAAAGAAGAAGAATTTATTAAAACGAGCAGTTTTTTTTGAGAAAATTTGGCATACATTGAAAACTTTTTAAAGGCAAAAACCGGTTTACACACATTTTAAGACACTAGATTCTAGCAAAACATTAGGAGAAAAAAGGAAAATAAAAGCTCTAATGTAAGTATTATTTAAATAAGTATCTATCCAAAAATATGGGTCGAATCAGAGAAATGTACATGTATTGTTGAGAAGAGAGAGAGAGAGAAGAACCAAAAAGGAGGGATACAGTTGATTTTTTTATCTCCGAGATAAAACACCGTGAATTGCACCGATTTTCGTAAGGGCATCATTTGATGTTCCAGGTGATAATGAGAGAGAAAGACTACGATGTTGAGGAGATGATGATGGAGATGTCAGAAGCTGAAAATAGGTTTTTAAAATAGT</canonical>
            <polymorphic>CTTGGTAATTGCGAAGCTATTTGACTAAATATAGAAGATGGAATTGATACTTGCGTACTGTAACTTAAGAAAAAAATCATTAAAATCGCCTGTCTCCTCTCTTTCTTATGAGGTTATTCAGGGAGTCGGCAAAAAAGGAAAAAAAAACTCCGCGAAAACTCGGAGAGTGTTCCAATCTGGCTGAAACTTTGGGGAAAATTGGNNNNNNNNNNTGCTTACGGTGATGTCTCGAAAAAACTAGTGCACAAAAACTGAATCTTTCAAAAAAAAAACGAGATTCCAATTCTTCATTTTTTTCCAGAAAATTAAACTAAATAAAAAATTCCCGCCGGAAAAATAGCATGTCTTTCAAAAAAGGGGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCCGCAAGATAAACCCATCTACCAAATGGGCTCTTTTTTGGAGGATGGGGGGAAATTTGCACTGCTCAGACTGGATTYGGTTACTAATTGAATTTCTGAATTCTGGTCTCTTTATTTTTTAGTTTAGCCAGAAAAAAGGAAAGAAAAAACAACAAAATAAAGAAGAAGAATTTATTAAAACGAGCAGTTTTTTTTGAGAAAATTTGGCATACATTGAAAACTTTTTAAAGGCAAAAACCGGTTTACACACATTTTAAGACACTAGATTCTAGCAAAACATTAGGAGAAAAAAGGAAAATAAAAGCTCTAATGTAAGTATTATTTAAATAAGTATCTATCCAAAAATATGGGTCGAATCAGAGAAATGTACATGTATTGTTGAGAAGAGAGAGAGAGAGAAGAACCAAAAAGGAGGGATACAGTTGATTTTTTTATCTCCGAGATAAAACACCGTGAATTGCACCGATTTTCGTAAGGGCATCATTTGATGTTCCAGGTGATAATGAGAGAGAAAGACTACGATGTTGAGGAGATGATGATGGAGATGTCAGAAGCTGAAAATAGGTTTTTAAAATAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCTATGTCGGTCCATTAG</pcr_primer_p1>
		<pcr_primer_p2>TGCTCGTTTTAATAAATTCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCCGCAAGATAAACCCATCTACCAAATGGGCTCTTTTTTGGAGGATGGGGGGAAATTTGCACTGCTCAGACTGGATTAGGTTACTAATTGAATTTCTGAATTCTGGTCTCTTTATTTTTTAGTTTAGCCAGAAAAAAGGAAAGAAAAAACAACAAAATAAAGAAGAAGAATTTATTAAAACGAGCA</canonical_amplicon>
		<polymorphic_amplicon>GGTCTATGTCGGTCCATTAGAATTTCGAATAAACCGAAAAGTCAAAATTTCCTTTTTCGATGGAGCCGCAAGATAAACCCATCTACCAAATGGGCTCTTTTTTGGAGGATGGGGGGAAATTTGCACTGCTCAGACTGGATTYGGTTACTAATTGAATTTCTGAATTCTGGTCTCTTTATTTTTTAGTTTAGCCAGAAAAAAGGAAAGAAAAAACAACAAAATAAAGAAGAAGAATTTATTAAAACGAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28502</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>82424</contig_pos>
        <strand>+</strand>
        <context>TTTCTCTTTA[C/T]GAATTATKCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCTGAAACGGAAAAATCTGAAATTAGTGTGATCTCATTTTCTCTTTA</left_flank>
        <right_flank>GAATTATTCTTGAAAAATTTTTCTCTGTTTCAAGAATATGTTTTCATAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGTTTGGTGGACATCGAAGGCATGTCGACGCTGTGAGCATGTGGGCGGTTGCCTGAAGAAGGAATTGTTAAACTCAGGTTGTCCCGTTTAGTATTATGCAAGTTTAAATTTATAGTAAATAATTTATAATTTTGCCAAAATAATTGGAAGTGAGGCAGTCTGAAACAACACCAGCAGCTTCAAGCAAGATACTCTTAGAGCTATTCTTTCAACCAACAAAGTAAAATGTATGTGTACTTGATCTAATAGAAGCCTACCGTATACATGTACTTTGAGCCAATTTATCTCGGTTCTTGTCAAAGATATCAAAATTTTTCAATTGATTCCTTACTGATCATAATATCTGCAATACATTGCAGATATTATTTTATCAGTTTATGAGAAACCAATCAGACTTAGATTAGAATCAGACGACTTTCGTTCACATGTTCTACAAAGATTTGTCATTTTTCTGAAACGGAAAAATCTGAAATTAGTGTGATCTCATTTTCTCTTTACGAATTATTCTTGAAAAATTTTTCTCTGTTTCAAGAATATGTTTTCATAACAACAAATACTTGTAATCAATGCGTAGTATGTTCCCACCAAATACCCCAACTCACCAATATGCAACCTCTGCAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACTTTCGCGCCACAATCGGTGTGGACACGGCTTCATCGCTGGGGAAGCTGTGGGTTTTTGTCTGAAAACATTTCATAATTTTACGACGAAAAGATATCGCACTACCTCTTCATCGATGGTATTGACACCAGAGACGGATGGAGTTGTTGCGACGTCTTCATGAGGGAGGGATGATTCACGGAAGATGTCTGTGCATGATGTACTAGCATCACAGAGAGTTGCTAGTTTGGCAGAAGTAGAGAAGATGGGTTCATGGATTGATGGAAGCAGCATCTGAGAGAAATATAGAGGCTCGAGAAAGTTAGGAAATGGCTTGGAACATACAGTAACATTTTT</canonical>
            <polymorphic>GTTGTTTGGTGGACATCGAAGGCATGTCGACGCTGTGAGCATGTGGGCGGTTGCCTGAAGAAGGAATTGTTAAACTCAGGTTGTCCCGTTTAGTATTATGCAAGTTTAAATTTATAGTAAATAATTTATAATTTTGCCAAAATAATTGGAAGTGAGGCAGTCTGAAACAACACCAGCAGCTTCAAGCAAGATACTCTTAGAGCTATTCTTTCAACCAACAAAGTAAAATGTATGTGTACTTGATCTAATAGAAGCCTACCGTATACATGTACTTTGAGCCAATTTATCTCGGTTCTTGTCAAAGATATCAAAATTTTTCAATTGATTCCTTACTGATCATAATATCTGCAATACATTGCAGATATTATTTTATCAGTTTATGAGAAACCAATCAGACTTAGATTAGAATCAGACGACTTTCGTTCACATGTTCTACAAAGATTTGTCATTTTTCTGAAACGGAAAAATCTGAAATTAGTGTGATCTCATTTTCTCTTTAYGAATTATTCTTGAAAAATTTTTCTCTGTTTCAAGAATATGTTTTCATAACAACAAATACTTGTAATCAATGCGTAGTATGTTCCCACCAAATACCCCAACTCACCAATATGCAACCTCTGCAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACTTTCGCGCCACAATCGGTGTGGACACGGCTTCATCGCTGGGGAAGCTGTGGGTTTTTGTCTGAAAACATTTCATAATTTTACGACGAAAAGATATCGCACTACCTCTTCATCGATGGTATTGACACCAGAGACGGATGGAGTTGTTGCGACGTCTTCATGAGGGAGGGATGATTCACGGAAGATGTCTGTGCATGATGTACTAGCATCACAGAGAGTTGCTAGTTTGGCAGAAGTAGAGAAGATGGGTTCATGGATTGATGGAAGCAGCATCTGAGAGAAATATAGAGGCTCGAGAAAGTTAGGAAATGGCTTGGAACATACAGTAACATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTCACATGTTCTACAAAGATT</pcr_primer_p1>
		<pcr_primer_p2>AAAGTATATACCGTGTTCGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGTTCACATGTTCTACAAAGATTTGTCATTTTTCTGAAACGGAAAAATCTGAAATTAGTGTGATCTCATTTTCTCTTTACGAATTATTCTTGAAAAATTTTTCTCTGTTTCAAGAATATGTTTTCATAACAACAAATACTTGTAATCAATGCGTAGTATGTTCCCACCAAATACCCCAACTCACCAATATGCAACCTCTGCAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACTTT</canonical_amplicon>
		<polymorphic_amplicon>CGTTCACATGTTCTACAAAGATTTGTCATTTTTCTGAAACGGAAAAATCTGAAATTAGTGTGATCTCATTTTCTCTTTAYGAATTATTCTTGAAAAATTTTTCTCTGTTTCAAGAATATGTTTTCATAACAACAAATACTTGTAATCAATGCGTAGTATGTTCCCACCAAATACCCCAACTCACCAATATGCAACCTCTGCAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28503</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>82432</contig_pos>
        <strand>+</strand>
        <context>TAYGAATTAT[G/T]CTTGAAAAAK</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACGGAAAAATCTGAAATTAGTGTGATCTCATTTTCTCTTTACGAATTAT</left_flank>
        <right_flank>CTTGAAAAATTTTTCTCTGTTTCAAGAATATGTTTTCATAACAACAAATA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGGACATCGAAGGCATGTCGACGCTGTGAGCATGTGGGCGGTTGCCTGAAGAAGGAATTGTTAAACTCAGGTTGTCCCGTTTAGTATTATGCAAGTTTAAATTTATAGTAAATAATTTATAATTTTGCCAAAATAATTGGAAGTGAGGCAGTCTGAAACAACACCAGCAGCTTCAAGCAAGATACTCTTAGAGCTATTCTTTCAACCAACAAAGTAAAATGTATGTGTACTTGATCTAATAGAAGCCTACCGTATACATGTACTTTGAGCCAATTTATCTCGGTTCTTGTCAAAGATATCAAAATTTTTCAATTGATTCCTTACTGATCATAATATCTGCAATACATTGCAGATATTATTTTATCAGTTTATGAGAAACCAATCAGACTTAGATTAGAATCAGACGACTTTCGTTCACATGTTCTACAAAGATTTGTCATTTTTCTGAAACGGAAAAATCTGAAATTAGTGTGATCTCATTTTCTCTTTACGAATTATTCTTGAAAAATTTTTCTCTGTTTCAAGAATATGTTTTCATAACAACAAATACTTGTAATCAATGCGTAGTATGTTCCCACCAAATACCCCAACTCACCAATATGCAACCTCTGCAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACTTTCGCGCCACAATCGGTGTGGACACGGCTTCATCGCTGGGGAAGCTGTGGGTTTTTGTCTGAAAACATTTCATAATTTTACGACGAAAAGATATCGCACTACCTCTTCATCGATGGTATTGACACCAGAGACGGATGGAGTTGTTGCGACGTCTTCATGAGGGAGGGATGATTCACGGAAGATGTCTGTGCATGATGTACTAGCATCACAGAGAGTTGCTAGTTTGGCAGAAGTAGAGAAGATGGGTTCATGGATTGATGGAAGCAGCATCTGAGAGAAATATAGAGGCTCGAGAAAGTTAGGAAATGGCTTGGAACATACAGTAACATTTTTCATGTTTC</canonical>
            <polymorphic>GTGGACATCGAAGGCATGTCGACGCTGTGAGCATGTGGGCGGTTGCCTGAAGAAGGAATTGTTAAACTCAGGTTGTCCCGTTTAGTATTATGCAAGTTTAAATTTATAGTAAATAATTTATAATTTTGCCAAAATAATTGGAAGTGAGGCAGTCTGAAACAACACCAGCAGCTTCAAGCAAGATACTCTTAGAGCTATTCTTTCAACCAACAAAGTAAAATGTATGTGTACTTGATCTAATAGAAGCCTACCGTATACATGTACTTTGAGCCAATTTATCTCGGTTCTTGTCAAAGATATCAAAATTTTTCAATTGATTCCTTACTGATCATAATATCTGCAATACATTGCAGATATTATTTTATCAGTTTATGAGAAACCAATCAGACTTAGATTAGAATCAGACGACTTTCGTTCACATGTTCTACAAAGATTTGTCATTTTTCTGAAACGGAAAAATCTGAAATTAGTGTGATCTCATTTTCTCTTTACGAATTATKCTTGAAAAATTTTTCTCTGTTTCAAGAATATGTTTTCATAACAACAAATACTTGTAATCAATGCGTAGTATGTTCCCACCAAATACCCCAACTCACCAATATGCAACCTCTGCAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACTTTCGCGCCACAATCGGTGTGGACACGGCTTCATCGCTGGGGAAGCTGTGGGTTTTTGTCTGAAAACATTTCATAATTTTACGACGAAAAGATATCGCACTACCTCTTCATCGATGGTATTGACACCAGAGACGGATGGAGTTGTTGCGACGTCTTCATGAGGGAGGGATGATTCACGGAAGATGTCTGTGCATGATGTACTAGCATCACAGAGAGTTGCTAGTTTGGCAGAAGTAGAGAAGATGGGTTCATGGATTGATGGAAGCAGCATCTGAGAGAAATATAGAGGCTCGAGAAAGTTAGGAAATGGCTTGGAACATACAGTAACATTTTTCATGTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>501 292 135 50 22</canonical_bands>
                <polymorphic_bands>523 292 135 50</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTTCACATGTTCTACAAAGATT</pcr_primer_p1>
		<pcr_primer_p2>AAAGTATATACCGTGTTCGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGTTCACATGTTCTACAAAGATTTGTCATTTTTCTGAAACGGAAAAATCTGAAATTAGTGTGATCTCATTTTCTCTTTACGAATTATTCTTGAAAAATTTTTCTCTGTTTCAAGAATATGTTTTCATAACAACAAATACTTGTAATCAATGCGTAGTATGTTCCCACCAAATACCCCAACTCACCAATATGCAACCTCTGCAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACTTT</canonical_amplicon>
		<polymorphic_amplicon>CGTTCACATGTTCTACAAAGATTTGTCATTTTTCTGAAACGGAAAAATCTGAAATTAGTGTGATCTCATTTTCTCTTTACGAATTATKCTTGAAAAATTTTTCTCTGTTTCAAGAATATGTTTTCATAACAACAAATACTTGTAATCAATGCGTAGTATGTTCCCACCAAATACCCCAACTCACCAATATGCAACCTCTGCAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28504</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>82442</contig_pos>
        <strand>+</strand>
        <context>KCTTGAAAAA[G/T]TTTTCTCTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTGAAATTAGTGTGATCTCATTTTCTCTTTACGAATTATTCTTGAAAAA</left_flank>
        <right_flank>TTTTCTCTGTTTCAAGAATATGTTTTCATAACAACAAATACTTGTAATCA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGGCATGTCGACGCTGTGAGCATGTGGGCGGTTGCCTGAAGAAGGAATTGTTAAACTCAGGTTGTCCCGTTTAGTATTATGCAAGTTTAAATTTATAGTAAATAATTTATAATTTTGCCAAAATAATTGGAAGTGAGGCAGTCTGAAACAACACCAGCAGCTTCAAGCAAGATACTCTTAGAGCTATTCTTTCAACCAACAAAGTAAAATGTATGTGTACTTGATCTAATAGAAGCCTACCGTATACATGTACTTTGAGCCAATTTATCTCGGTTCTTGTCAAAGATATCAAAATTTTTCAATTGATTCCTTACTGATCATAATATCTGCAATACATTGCAGATATTATTTTATCAGTTTATGAGAAACCAATCAGACTTAGATTAGAATCAGACGACTTTCGTTCACATGTTCTACAAAGATTTGTCATTTTTCTGAAACGGAAAAATCTGAAATTAGTGTGATCTCATTTTCTCTTTACGAATTATTCTTGAAAAATTTTTCTCTGTTTCAAGAATATGTTTTCATAACAACAAATACTTGTAATCAATGCGTAGTATGTTCCCACCAAATACCCCAACTCACCAATATGCAACCTCTGCAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACTTTCGCGCCACAATCGGTGTGGACACGGCTTCATCGCTGGGGAAGCTGTGGGTTTTTGTCTGAAAACATTTCATAATTTTACGACGAAAAGATATCGCACTACCTCTTCATCGATGGTATTGACACCAGAGACGGATGGAGTTGTTGCGACGTCTTCATGAGGGAGGGATGATTCACGGAAGATGTCTGTGCATGATGTACTAGCATCACAGAGAGTTGCTAGTTTGGCAGAAGTAGAGAAGATGGGTTCATGGATTGATGGAAGCAGCATCTGAGAGAAATATAGAGGCTCGAGAAAGTTAGGAAATGGCTTGGAACATACAGTAACATTTTTCATGTTTCTAATTTTTCC</canonical>
            <polymorphic>AAGGCATGTCGACGCTGTGAGCATGTGGGCGGTTGCCTGAAGAAGGAATTGTTAAACTCAGGTTGTCCCGTTTAGTATTATGCAAGTTTAAATTTATAGTAAATAATTTATAATTTTGCCAAAATAATTGGAAGTGAGGCAGTCTGAAACAACACCAGCAGCTTCAAGCAAGATACTCTTAGAGCTATTCTTTCAACCAACAAAGTAAAATGTATGTGTACTTGATCTAATAGAAGCCTACCGTATACATGTACTTTGAGCCAATTTATCTCGGTTCTTGTCAAAGATATCAAAATTTTTCAATTGATTCCTTACTGATCATAATATCTGCAATACATTGCAGATATTATTTTATCAGTTTATGAGAAACCAATCAGACTTAGATTAGAATCAGACGACTTTCGTTCACATGTTCTACAAAGATTTGTCATTTTTCTGAAACGGAAAAATCTGAAATTAGTGTGATCTCATTTTCTCTTTACGAATTATTCTTGAAAAAKTTTTCTCTGTTTCAAGAATATGTTTTCATAACAACAAATACTTGTAATCAATGCGTAGTATGTTCCCACCAAATACCCCAACTCACCAATATGCAACCTCTGCAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACTTTCGCGCCACAATCGGTGTGGACACGGCTTCATCGCTGGGGAAGCTGTGGGTTTTTGTCTGAAAACATTTCATAATTTTACGACGAAAAGATATCGCACTACCTCTTCATCGATGGTATTGACACCAGAGACGGATGGAGTTGTTGCGACGTCTTCATGAGGGAGGGATGATTCACGGAAGATGTCTGTGCATGATGTACTAGCATCACAGAGAGTTGCTAGTTTGGCAGAAGTAGAGAAGATGGGTTCATGGATTGATGGAAGCAGCATCTGAGAGAAATATAGAGGCTCGAGAAAGTTAGGAAATGGCTTGGAACATACAGTAACATTTTTCATGTTTCTAATTTTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>503 204 203 90</canonical_bands>
                <polymorphic_bands>707 203 90</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>269 153 137 116 109 46 44 31 29 14 14 14 9 8 7</canonical_bands>
                <polymorphic_bands>269 153 137 130 109 46 44 31 29 14 14 9 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTTCACATGTTCTACAAAGATT</pcr_primer_p1>
		<pcr_primer_p2>AAAGTATATACCGTGTTCGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGTTCACATGTTCTACAAAGATTTGTCATTTTTCTGAAACGGAAAAATCTGAAATTAGTGTGATCTCATTTTCTCTTTACGAATTATTCTTGAAAAATTTTTCTCTGTTTCAAGAATATGTTTTCATAACAACAAATACTTGTAATCAATGCGTAGTATGTTCCCACCAAATACCCCAACTCACCAATATGCAACCTCTGCAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACTTT</canonical_amplicon>
		<polymorphic_amplicon>CGTTCACATGTTCTACAAAGATTTGTCATTTTTCTGAAACGGAAAAATCTGAAATTAGTGTGATCTCATTTTCTCTTTACGAATTATTCTTGAAAAAKTTTTCTCTGTTTCAAGAATATGTTTTCATAACAACAAATACTTGTAATCAATGCGTAGTATGTTCCCACCAAATACCCCAACTCACCAATATGCAACCTCTGCAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28505</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>82501</contig_pos>
        <strand>+</strand>
        <context>CAATGCGTAG[A/T]WTGTTCCCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTTCAAGAATATGTTTTCATAACAACAAATACTTGTAATCAATGCGTAG</left_flank>
        <right_flank>ATGTTCCCACCAAATACCCCAACTCACCAATATGCAACCTCTGCAGTTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTTGTCCCGTTTAGTATTATGCAAGTTTAAATTTATAGTAAATAATTTATAATTTTGCCAAAATAATTGGAAGTGAGGCAGTCTGAAACAACACCAGCAGCTTCAAGCAAGATACTCTTAGAGCTATTCTTTCAACCAACAAAGTAAAATGTATGTGTACTTGATCTAATAGAAGCCTACCGTATACATGTACTTTGAGCCAATTTATCTCGGTTCTTGTCAAAGATATCAAAATTTTTCAATTGATTCCTTACTGATCATAATATCTGCAATACATTGCAGATATTATTTTATCAGTTTATGAGAAACCAATCAGACTTAGATTAGAATCAGACGACTTTCGTTCACATGTTCTACAAAGATTTGTCATTTTTCTGAAACGGAAAAATCTGAAATTAGTGTGATCTCATTTTCTCTTTACGAATTATTCTTGAAAAATTTTTCTCTGTTTCAAGAATATGTTTTCATAACAACAAATACTTGTAATCAATGCGTAGTATGTTCCCACCAAATACCCCAACTCACCAATATGCAACCTCTGCAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACTTTCGCGCCACAATCGGTGTGGACACGGCTTCATCGCTGGGGAAGCTGTGGGTTTTTGTCTGAAAACATTTCATAATTTTACGACGAAAAGATATCGCACTACCTCTTCATCGATGGTATTGACACCAGAGACGGATGGAGTTGTTGCGACGTCTTCATGAGGGAGGGATGATTCACGGAAGATGTCTGTGCATGATGTACTAGCATCACAGAGAGTTGCTAGTTTGGCAGAAGTAGAGAAGATGGGTTCATGGATTGATGGAAGCAGCATCTGAGAGAAATATAGAGGCTCGAGAAAGTTAGGAAATGGCTTGGAACATACAGTAACATTTTTCATGTTTCTAATTTTTCCCCTACTAGTAATTCTTTCAATTTTTTCCTTCTAATTACGTTTATTCAAACTTTACTGTT</canonical>
            <polymorphic>AGGTTGTCCCGTTTAGTATTATGCAAGTTTAAATTTATAGTAAATAATTTATAATTTTGCCAAAATAATTGGAAGTGAGGCAGTCTGAAACAACACCAGCAGCTTCAAGCAAGATACTCTTAGAGCTATTCTTTCAACCAACAAAGTAAAATGTATGTGTACTTGATCTAATAGAAGCCTACCGTATACATGTACTTTGAGCCAATTTATCTCGGTTCTTGTCAAAGATATCAAAATTTTTCAATTGATTCCTTACTGATCATAATATCTGCAATACATTGCAGATATTATTTTATCAGTTTATGAGAAACCAATCAGACTTAGATTAGAATCAGACGACTTTCGTTCACATGTTCTACAAAGATTTGTCATTTTTCTGAAACGGAAAAATCTGAAATTAGTGTGATCTCATTTTCTCTTTACGAATTATTCTTGAAAAATTTTTCTCTGTTTCAAGAATATGTTTTCATAACAACAAATACTTGTAATCAATGCGTAGWATGTTCCCACCAAATACCCCAACTCACCAATATGCAACCTCTGCAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACTTTCGCGCCACAATCGGTGTGGACACGGCTTCATCGCTGGGGAAGCTGTGGGTTTTTGTCTGAAAACATTTCATAATTTTACGACGAAAAGATATCGCACTACCTCTTCATCGATGGTATTGACACCAGAGACGGATGGAGTTGTTGCGACGTCTTCATGAGGGAGGGATGATTCACGGAAGATGTCTGTGCATGATGTACTAGCATCACAGAGAGTTGCTAGTTTGGCAGAAGTAGAGAAGATGGGTTCATGGATTGATGGAAGCAGCATCTGAGAGAAATATAGAGGCTCGAGAAAGTTAGGAAATGGCTTGGAACATACAGTAACATTTTTCATGTTTCTAATTTTTCCCCTACTAGTAATTCTTTCAATTTTTTCCTTCTAATTACGTTTATTCAAACTTTACTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTCACATGTTCTACAAAGATT</pcr_primer_p1>
		<pcr_primer_p2>AAAGTATATACCGTGTTCGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGTTCACATGTTCTACAAAGATTTGTCATTTTTCTGAAACGGAAAAATCTGAAATTAGTGTGATCTCATTTTCTCTTTACGAATTATTCTTGAAAAATTTTTCTCTGTTTCAAGAATATGTTTTCATAACAACAAATACTTGTAATCAATGCGTAGTATGTTCCCACCAAATACCCCAACTCACCAATATGCAACCTCTGCAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACTTT</canonical_amplicon>
		<polymorphic_amplicon>CGTTCACATGTTCTACAAAGATTTGTCATTTTTCTGAAACGGAAAAATCTGAAATTAGTGTGATCTCATTTTCTCTTTACGAATTATTCTTGAAAAATTTTTCTCTGTTTCAAGAATATGTTTTCATAACAACAAATACTTGTAATCAATGCGTAGWATGTTCCCACCAAATACCCCAACTCACCAATATGCAACCTCTGCAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28506</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>82502</contig_pos>
        <strand>+</strand>
        <context>AATGCGTAGW[A/T]TGTTCCCACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCAAGAATATGTTTTCATAACAACAAATACTTGTAATCAATGCGTAGT</left_flank>
        <right_flank>TGTTCCCACCAAATACCCCAACTCACCAATATGCAACCTCTGCAGTTTGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTGTCCCGTTTAGTATTATGCAAGTTTAAATTTATAGTAAATAATTTATAATTTTGCCAAAATAATTGGAAGTGAGGCAGTCTGAAACAACACCAGCAGCTTCAAGCAAGATACTCTTAGAGCTATTCTTTCAACCAACAAAGTAAAATGTATGTGTACTTGATCTAATAGAAGCCTACCGTATACATGTACTTTGAGCCAATTTATCTCGGTTCTTGTCAAAGATATCAAAATTTTTCAATTGATTCCTTACTGATCATAATATCTGCAATACATTGCAGATATTATTTTATCAGTTTATGAGAAACCAATCAGACTTAGATTAGAATCAGACGACTTTCGTTCACATGTTCTACAAAGATTTGTCATTTTTCTGAAACGGAAAAATCTGAAATTAGTGTGATCTCATTTTCTCTTTACGAATTATTCTTGAAAAATTTTTCTCTGTTTCAAGAATATGTTTTCATAACAACAAATACTTGTAATCAATGCGTAGTATGTTCCCACCAAATACCCCAACTCACCAATATGCAACCTCTGCAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACTTTCGCGCCACAATCGGTGTGGACACGGCTTCATCGCTGGGGAAGCTGTGGGTTTTTGTCTGAAAACATTTCATAATTTTACGACGAAAAGATATCGCACTACCTCTTCATCGATGGTATTGACACCAGAGACGGATGGAGTTGTTGCGACGTCTTCATGAGGGAGGGATGATTCACGGAAGATGTCTGTGCATGATGTACTAGCATCACAGAGAGTTGCTAGTTTGGCAGAAGTAGAGAAGATGGGTTCATGGATTGATGGAAGCAGCATCTGAGAGAAATATAGAGGCTCGAGAAAGTTAGGAAATGGCTTGGAACATACAGTAACATTTTTCATGTTTCTAATTTTTCCCCTACTAGTAATTCTTTCAATTTTTTCCTTCTAATTACGTTTATTCAAACTTTACTGTTT</canonical>
            <polymorphic>GGTTGTCCCGTTTAGTATTATGCAAGTTTAAATTTATAGTAAATAATTTATAATTTTGCCAAAATAATTGGAAGTGAGGCAGTCTGAAACAACACCAGCAGCTTCAAGCAAGATACTCTTAGAGCTATTCTTTCAACCAACAAAGTAAAATGTATGTGTACTTGATCTAATAGAAGCCTACCGTATACATGTACTTTGAGCCAATTTATCTCGGTTCTTGTCAAAGATATCAAAATTTTTCAATTGATTCCTTACTGATCATAATATCTGCAATACATTGCAGATATTATTTTATCAGTTTATGAGAAACCAATCAGACTTAGATTAGAATCAGACGACTTTCGTTCACATGTTCTACAAAGATTTGTCATTTTTCTGAAACGGAAAAATCTGAAATTAGTGTGATCTCATTTTCTCTTTACGAATTATTCTTGAAAAATTTTTCTCTGTTTCAAGAATATGTTTTCATAACAACAAATACTTGTAATCAATGCGTAGTWTGTTCCCACCAAATACCCCAACTCACCAATATGCAACCTCTGCAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACTTTCGCGCCACAATCGGTGTGGACACGGCTTCATCGCTGGGGAAGCTGTGGGTTTTTGTCTGAAAACATTTCATAATTTTACGACGAAAAGATATCGCACTACCTCTTCATCGATGGTATTGACACCAGAGACGGATGGAGTTGTTGCGACGTCTTCATGAGGGAGGGATGATTCACGGAAGATGTCTGTGCATGATGTACTAGCATCACAGAGAGTTGCTAGTTTGGCAGAAGTAGAGAAGATGGGTTCATGGATTGATGGAAGCAGCATCTGAGAGAAATATAGAGGCTCGAGAAAGTTAGGAAATGGCTTGGAACATACAGTAACATTTTTCATGTTTCTAATTTTTCCCCTACTAGTAATTCTTTCAATTTTTTCCTTCTAATTACGTTTATTCAAACTTTACTGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTCACATGTTCTACAAAGATT</pcr_primer_p1>
		<pcr_primer_p2>AAAGTATATACCGTGTTCGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGTTCACATGTTCTACAAAGATTTGTCATTTTTCTGAAACGGAAAAATCTGAAATTAGTGTGATCTCATTTTCTCTTTACGAATTATTCTTGAAAAATTTTTCTCTGTTTCAAGAATATGTTTTCATAACAACAAATACTTGTAATCAATGCGTAGTATGTTCCCACCAAATACCCCAACTCACCAATATGCAACCTCTGCAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACTTT</canonical_amplicon>
		<polymorphic_amplicon>CGTTCACATGTTCTACAAAGATTTGTCATTTTTCTGAAACGGAAAAATCTGAAATTAGTGTGATCTCATTTTCTCTTTACGAATTATTCTTGAAAAATTTTTCTCTGTTTCAAGAATATGTTTTCATAACAACAAATACTTGTAATCAATGCGTAGTWTGTTCCCACCAAATACCCCAACTCACCAATATGCAACCTCTGCAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28507</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>82541</contig_pos>
        <strand>+</strand>
        <context>ATATGCAACC[G/T]CTGCAGTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAATGCGTAGTATGTTCCCACCAAATACCCCAACTCACCAATATGCAACC</left_flank>
        <right_flank>CTGCAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATAATTTATAATTTTGCCAAAATAATTGGAAGTGAGGCAGTCTGAAACAACACCAGCAGCTTCAAGCAAGATACTCTTAGAGCTATTCTTTCAACCAACAAAGTAAAATGTATGTGTACTTGATCTAATAGAAGCCTACCGTATACATGTACTTTGAGCCAATTTATCTCGGTTCTTGTCAAAGATATCAAAATTTTTCAATTGATTCCTTACTGATCATAATATCTGCAATACATTGCAGATATTATTTTATCAGTTTATGAGAAACCAATCAGACTTAGATTAGAATCAGACGACTTTCGTTCACATGTTCTACAAAGATTTGTCATTTTTCTGAAACGGAAAAATCTGAAATTAGTGTGATCTCATTTTCTCTTTACGAATTATTCTTGAAAAATTTTTCTCTGTTTCAAGAATATGTTTTCATAACAACAAATACTTGTAATCAATGCGTAGTATGTTCCCACCAAATACCCCAACTCACCAATATGCAACCTCTGCAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACTTTCGCGCCACAATCGGTGTGGACACGGCTTCATCGCTGGGGAAGCTGTGGGTTTTTGTCTGAAAACATTTCATAATTTTACGACGAAAAGATATCGCACTACCTCTTCATCGATGGTATTGACACCAGAGACGGATGGAGTTGTTGCGACGTCTTCATGAGGGAGGGATGATTCACGGAAGATGTCTGTGCATGATGTACTAGCATCACAGAGAGTTGCTAGTTTGGCAGAAGTAGAGAAGATGGGTTCATGGATTGATGGAAGCAGCATCTGAGAGAAATATAGAGGCTCGAGAAAGTTAGGAAATGGCTTGGAACATACAGTAACATTTTTCATGTTTCTAATTTTTCCCCTACTAGTAATTCTTTCAATTTTTTCCTTCTAATTACGTTTATTCAAACTTTACTGTTTCATAACATTTGTAAAGATTACTTAAAATTCCTTATTCAT</canonical>
            <polymorphic>TAAATAATTTATAATTTTGCCAAAATAATTGGAAGTGAGGCAGTCTGAAACAACACCAGCAGCTTCAAGCAAGATACTCTTAGAGCTATTCTTTCAACCAACAAAGTAAAATGTATGTGTACTTGATCTAATAGAAGCCTACCGTATACATGTACTTTGAGCCAATTTATCTCGGTTCTTGTCAAAGATATCAAAATTTTTCAATTGATTCCTTACTGATCATAATATCTGCAATACATTGCAGATATTATTTTATCAGTTTATGAGAAACCAATCAGACTTAGATTAGAATCAGACGACTTTCGTTCACATGTTCTACAAAGATTTGTCATTTTTCTGAAACGGAAAAATCTGAAATTAGTGTGATCTCATTTTCTCTTTACGAATTATTCTTGAAAAATTTTTCTCTGTTTCAAGAATATGTTTTCATAACAACAAATACTTGTAATCAATGCGTAGTATGTTCCCACCAAATACCCCAACTCACCAATATGCAACCKCTGCAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACTTTCGCGCCACAATCGGTGTGGACACGGCTTCATCGCTGGGGAAGCTGTGGGTTTTTGTCTGAAAACATTTCATAATTTTACGACGAAAAGATATCGCACTACCTCTTCATCGATGGTATTGACACCAGAGACGGATGGAGTTGTTGCGACGTCTTCATGAGGGAGGGATGATTCACGGAAGATGTCTGTGCATGATGTACTAGCATCACAGAGAGTTGCTAGTTTGGCAGAAGTAGAGAAGATGGGTTCATGGATTGATGGAAGCAGCATCTGAGAGAAATATAGAGGCTCGAGAAAGTTAGGAAATGGCTTGGAACATACAGTAACATTTTTCATGTTTCTAATTTTTCCCCTACTAGTAATTCTTTCAATTTTTTCCTTCTAATTACGTTTATTCAAACTTTACTGTTTCATAACATTTGTAAAGATTACTTAAAATTCCTTATTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAATACTTGTAATCAATGCGTAG</pcr_primer_p1>
		<pcr_primer_p2>ATCCGTCTCTGGTGTCAATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAAATACTTGTAATCAATGCGTAGTATGTTCCCACCAAATACCCCAACTCACCAATATGCAACCTCTGCAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACTTTCGCGCCACAATCGGTGTGGACACGGCTTCATCGCTGGGGAAGCTGTGGGTTTTTGTCTGAAAACATTTCATAATTTTACGACGAAAAGATATCGCACTACCTCTTCATCGATGGTATTGACACCAGAGACGGAT</canonical_amplicon>
		<polymorphic_amplicon>CAAATACTTGTAATCAATGCGTAGTATGTTCCCACCAAATACCCCAACTCACCAATATGCAACCKCTGCAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACTTTCGCGCCACAATCGGTGTGGACACGGCTTCATCGCTGGGGAAGCTGTGGGTTTTTGTCTGAAAACATTTCATAATTTTACGACGAAAAGATATCGCACTACCTCTTCATCGATGGTATTGACACCAGAGACGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28508</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>82623</contig_pos>
        <strand>+</strand>
        <context>ACACGGCTTC[A/T]TCGCTGGGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCGAACACGGTATATACTTTCGCGCCACAATCGGTGTGGACACGGCTTC</left_flank>
        <right_flank>TCGCTGGGGAAGCTGTGGGTTTTTGTCTGAAAACATTTCATAATTTTACG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCTATTCTTTCAACCAACAAAGTAAAATGTATGTGTACTTGATCTAATAGAAGCCTACCGTATACATGTACTTTGAGCCAATTTATCTCGGTTCTTGTCAAAGATATCAAAATTTTTCAATTGATTCCTTACTGATCATAATATCTGCAATACATTGCAGATATTATTTTATCAGTTTATGAGAAACCAATCAGACTTAGATTAGAATCAGACGACTTTCGTTCACATGTTCTACAAAGATTTGTCATTTTTCTGAAACGGAAAAATCTGAAATTAGTGTGATCTCATTTTCTCTTTACGAATTATTCTTGAAAAATTTTTCTCTGTTTCAAGAATATGTTTTCATAACAACAAATACTTGTAATCAATGCGTAGTATGTTCCCACCAAATACCCCAACTCACCAATATGCAACCTCTGCAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACTTTCGCGCCACAATCGGTGTGGACACGGCTTCATCGCTGGGGAAGCTGTGGGTTTTTGTCTGAAAACATTTCATAATTTTACGACGAAAAGATATCGCACTACCTCTTCATCGATGGTATTGACACCAGAGACGGATGGAGTTGTTGCGACGTCTTCATGAGGGAGGGATGATTCACGGAAGATGTCTGTGCATGATGTACTAGCATCACAGAGAGTTGCTAGTTTGGCAGAAGTAGAGAAGATGGGTTCATGGATTGATGGAAGCAGCATCTGAGAGAAATATAGAGGCTCGAGAAAGTTAGGAAATGGCTTGGAACATACAGTAACATTTTTCATGTTTCTAATTTTTCCCCTACTAGTAATTCTTTCAATTTTTTCCTTCTAATTACGTTTATTCAAACTTTACTGTTTCATAACATTTGTAAAGATTACTTAAAATTCCTTATTCATGATAGACGTCTGAAATCCATCTCTGTCAGAACCTGACCAAGAAATGAAACTCACATTCAAATATTTTTCCCTACATTAATCC</canonical>
            <polymorphic>GAGCTATTCTTTCAACCAACAAAGTAAAATGTATGTGTACTTGATCTAATAGAAGCCTACCGTATACATGTACTTTGAGCCAATTTATCTCGGTTCTTGTCAAAGATATCAAAATTTTTCAATTGATTCCTTACTGATCATAATATCTGCAATACATTGCAGATATTATTTTATCAGTTTATGAGAAACCAATCAGACTTAGATTAGAATCAGACGACTTTCGTTCACATGTTCTACAAAGATTTGTCATTTTTCTGAAACGGAAAAATCTGAAATTAGTGTGATCTCATTTTCTCTTTACGAATTATTCTTGAAAAATTTTTCTCTGTTTCAAGAATATGTTTTCATAACAACAAATACTTGTAATCAATGCGTAGTATGTTCCCACCAAATACCCCAACTCACCAATATGCAACCTCTGCAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACTTTCGCGCCACAATCGGTGTGGACACGGCTTCWTCGCTGGGGAAGCTGTGGGTTTTTGTCTGAAAACATTTCATAATTTTACGACGAAAAGATATCGCACTACCTCTTCATCGATGGTATTGACACCAGAGACGGATGGAGTTGTTGCGACGTCTTCATGAGGGAGGGATGATTCACGGAAGATGTCTGTGCATGATGTACTAGCATCACAGAGAGTTGCTAGTTTGGCAGAAGTAGAGAAGATGGGTTCATGGATTGATGGAAGCAGCATCTGAGAGAAATATAGAGGCTCGAGAAAGTTAGGAAATGGCTTGGAACATACAGTAACATTTTTCATGTTTCTAATTTTTCCCCTACTAGTAATTCTTTCAATTTTTTCCTTCTAATTACGTTTATTCAAACTTTACTGTTTCATAACATTTGTAAAGATTACTTAAAATTCCTTATTCATGATAGACGTCTGAAATCCATCTCTGTCAGAACCTGACCAAGAAATGAAACTCACATTCAAATATTTTTCCCTACATTAATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTGCTCAAATTGCTCT</pcr_primer_p1>
		<pcr_primer_p2>CTAGTACATCATGCACAGACATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACTTTCGCGCCACAATCGGTGTGGACACGGCTTCATCGCTGGGGAAGCTGTGGGTTTTTGTCTGAAAACATTTCATAATTTTACGACGAAAAGATATCGCACTACCTCTTCATCGATGGTATTGACACCAGAGACGGATGGAGTTGTTGCGACGTCTTCATGAGGGAGGGATGATTCACGGAAGATGTCTGTGCATGATGTACTAG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACTTTCGCGCCACAATCGGTGTGGACACGGCTTCWTCGCTGGGGAAGCTGTGGGTTTTTGTCTGAAAACATTTCATAATTTTACGACGAAAAGATATCGCACTACCTCTTCATCGATGGTATTGACACCAGAGACGGATGGAGTTGTTGCGACGTCTTCATGAGGGAGGGATGATTCACGGAAGATGTCTGTGCATGATGTACTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28509</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>82675</contig_pos>
        <strand>+</strand>
        <context>AATTTTACGA[A/C]GAAAAGATAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGCTGGGGAAGCTGTGGGTTTTTGTCTGAAAACATTTCATAATTTTACGA</left_flank>
        <right_flank>GAAAAGATATCGCACTACCTCTTCATCGATGGTATTGACACCAGAGACGG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCCTACCGTATACATGTACTTTGAGCCAATTTATCTCGGTTCTTGTCAAAGATATCAAAATTTTTCAATTGATTCCTTACTGATCATAATATCTGCAATACATTGCAGATATTATTTTATCAGTTTATGAGAAACCAATCAGACTTAGATTAGAATCAGACGACTTTCGTTCACATGTTCTACAAAGATTTGTCATTTTTCTGAAACGGAAAAATCTGAAATTAGTGTGATCTCATTTTCTCTTTACGAATTATTCTTGAAAAATTTTTCTCTGTTTCAAGAATATGTTTTCATAACAACAAATACTTGTAATCAATGCGTAGTATGTTCCCACCAAATACCCCAACTCACCAATATGCAACCTCTGCAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACTTTCGCGCCACAATCGGTGTGGACACGGCTTCATCGCTGGGGAAGCTGTGGGTTTTTGTCTGAAAACATTTCATAATTTTACGACGAAAAGATATCGCACTACCTCTTCATCGATGGTATTGACACCAGAGACGGATGGAGTTGTTGCGACGTCTTCATGAGGGAGGGATGATTCACGGAAGATGTCTGTGCATGATGTACTAGCATCACAGAGAGTTGCTAGTTTGGCAGAAGTAGAGAAGATGGGTTCATGGATTGATGGAAGCAGCATCTGAGAGAAATATAGAGGCTCGAGAAAGTTAGGAAATGGCTTGGAACATACAGTAACATTTTTCATGTTTCTAATTTTTCCCCTACTAGTAATTCTTTCAATTTTTTCCTTCTAATTACGTTTATTCAAACTTTACTGTTTCATAACATTTGTAAAGATTACTTAAAATTCCTTATTCATGATAGACGTCTGAAATCCATCTCTGTCAGAACCTGACCAAGAAATGAAACTCACATTCAAATATTTTTCCCTACATTAATCCTTTTTATTATCGAATATTTTTTCCTTACAGTAATCCTTTCATTATTAATTGA</canonical>
            <polymorphic>AAGCCTACCGTATACATGTACTTTGAGCCAATTTATCTCGGTTCTTGTCAAAGATATCAAAATTTTTCAATTGATTCCTTACTGATCATAATATCTGCAATACATTGCAGATATTATTTTATCAGTTTATGAGAAACCAATCAGACTTAGATTAGAATCAGACGACTTTCGTTCACATGTTCTACAAAGATTTGTCATTTTTCTGAAACGGAAAAATCTGAAATTAGTGTGATCTCATTTTCTCTTTACGAATTATTCTTGAAAAATTTTTCTCTGTTTCAAGAATATGTTTTCATAACAACAAATACTTGTAATCAATGCGTAGTATGTTCCCACCAAATACCCCAACTCACCAATATGCAACCTCTGCAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACTTTCGCGCCACAATCGGTGTGGACACGGCTTCATCGCTGGGGAAGCTGTGGGTTTTTGTCTGAAAACATTTCATAATTTTACGAMGAAAAGATATCGCACTACCTCTTCATCGATGGTATTGACACCAGAGACGGATGGAGTTGTTGCGACGTCTTCATGAGGGAGGGATGATTCACGGAAGATGTCTGTGCATGATGTACTAGCATCACAGAGAGTTGCTAGTTTGGCAGAAGTAGAGAAGATGGGTTCATGGATTGATGGAAGCAGCATCTGAGAGAAATATAGAGGCTCGAGAAAGTTAGGAAATGGCTTGGAACATACAGTAACATTTTTCATGTTTCTAATTTTTCCCCTACTAGTAATTCTTTCAATTTTTTCCTTCTAATTACGTTTATTCAAACTTTACTGTTTCATAACATTTGTAAAGATTACTTAAAATTCCTTATTCATGATAGACGTCTGAAATCCATCTCTGTCAGAACCTGACCAAGAAATGAAACTCACATTCAAATATTTTTCCCTACATTAATCCTTTTTATTATCGAATATTTTTTCCTTACAGTAATCCTTTCATTATTAATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>501 433 66</canonical_bands>
                <polymorphic_bands>567 433</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTGCTCAAATTGCTCT</pcr_primer_p1>
		<pcr_primer_p2>CTAGTACATCATGCACAGACATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACTTTCGCGCCACAATCGGTGTGGACACGGCTTCATCGCTGGGGAAGCTGTGGGTTTTTGTCTGAAAACATTTCATAATTTTACGACGAAAAGATATCGCACTACCTCTTCATCGATGGTATTGACACCAGAGACGGATGGAGTTGTTGCGACGTCTTCATGAGGGAGGGATGATTCACGGAAGATGTCTGTGCATGATGTACTAG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTGCTCAAATTGCTCTTGCTCGGACTCGAACACGGTATATACTTTCGCGCCACAATCGGTGTGGACACGGCTTCATCGCTGGGGAAGCTGTGGGTTTTTGTCTGAAAACATTTCATAATTTTACGAMGAAAAGATATCGCACTACCTCTTCATCGATGGTATTGACACCAGAGACGGATGGAGTTGTTGCGACGTCTTCATGAGGGAGGGATGATTCACGGAAGATGTCTGTGCATGATGTACTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28510</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>85120</contig_pos>
        <strand></strand>
        <context>TGAACTCATG[A/G]CAGGCAGCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGTGTTGAACTCATG</left_flank>
        <right_flank>CAGGCAGCTCAGGGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAAGGTTTACAAAAACCAATAGTACTTTGATTAGACCTTTTCTTGTAATCCCTGATTTCTGTCTGATTTCTAATTTGTCAACCTTCCCCACACTTATCAATTTAAACCCCCCGCAATCACTACTATCAGTTACTCTCTCGTTTATTTAACAAACCTCTCATTTTCCGATTTTGTGGATTTAAGACGTTCTCGAAGTGTCTCGTCGCTGTTTGATCTGCAATTAAACCATTTATTTGACCTTCGTTTTTTTTCTCAACAGAGCGTATTCACCTCGGAACACCCTCATCGTCAAGATGTGAATACACCCGGAGCAACTCGATTCGTTGATTTAGTTCATGTTTTAATTGAACTATGGTGTCCAGGTTCTTGTTGACACTCTCCTCGAGGAATTCATTTCTGGAAAAAAAATCATAAAAATATTAAAAGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGTGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAGACTTTGTATTGTTAACGAGAGTCCATATTTTATGAAATTCATTCTCGAATCAAAACTAAATCGGTTACTAAAGAAATTGATTATAGAAAATCACAAAAACCTGATAAGATTTTTGAAACAGAAACATTTTTTTCGACAGTTTACAAGGCTGCCTAACTGAAACTAAAACTCTATAAAAGCTCAGATTACCGTAAACAATCCAATAAAATGCTCCCAAACCATCAACCTTGAGCCAGTTTATCTCGATTCCTGTGAAAGGTATCAAAAATCTGTCAACTGATTAAAATGTTGGTGATATTATGATAAACATTCCGTCAATTGATCACTTTTTGATATCTTTTACGGAAATTGAGATATACGGGTTCAAGA</canonical>
            <polymorphic>TTGAAGGTTTACAAAAACCAATAGTACTTTGATTAGACCTTTTCTTGTAATCCCTGATTTCTGTCTGATTTCTAATTTGTCAACCTTCCCCACACTTATCAATTTAAACCCCCCGCAATCACTACTATCAGTTACTCTCTCGTTTATTTAACAAACCTCTCATTTTCCGATTTTGTGGATTTAAGACGTTCTCGAAGTGTCTCGTCGCTGTTTGATCTGCAATTAAACCATTTATTTGACCTTCGTTTTTTTTCTCAACAGAGCGTATTCACCTCGGAACACCCTCATCGTCAAGATGTGAATACACCCGGAGCAACTCGATTCGTTGATTTAGTTCATGTTTTAATTGAACTATGGTGTCCAGGTTCTTGTTGACACTCTCCTCGAGGAATTCATTTCTGGAAAAAAAATCATAAAAATATTAAAAGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGTGTTGAACTCATGRCAGGCAGCTCAGGGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAGACTTTGTATTGTTAACGAGAGTCCATATTTTATGAAATTCATTCTCGAATCAAAACTAAATCGGTTACTAAAGAAATTGATTATAGAAAATCACAAAAACCTGATAAGATTTTTGAAACAGAAACATTTTTTTCGACAGTTTACAAGGCTGCCTAACTGAAACTAAAACTCTATAAAAGCTCAGATTACCGTAAACAATCCAATAAAATGCTCCCAAACCATCAACCTTGAGCCAGTTTATCTCGATTCCTGTGAAAGGTATCAAAAATCTGTCAACTGATTAAAATGTTGGTGATATTATGATAAACATTCCGTCAATTGATCACTTTTTGATATCTTTTACGGAAATTGAGATATACGGGTTCAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>198 191 179 123 107 101 56 41 4</canonical_bands>
                <polymorphic_bands>220 198 191 123 107 101 56 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATATTAAAAGAGGCCAGAC</pcr_primer_p1>
		<pcr_primer_p2>ATGGACTCTCGTTAACAATACAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAAAATATTAAAAGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGTGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAGACTTTGTATTGTTAACGAGAGTCCAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATATTAAAAGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGTGTTGAACTCATGRCAGGCAGCTCAGGGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAGACTTTGTATTGTTAACGAGAGTCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28511</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>85138</contig_pos>
        <strand></strand>
        <context>CTCAGGGGTA[C/T]AGCGCCGCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAGAGAACCCCCATGAGGTGTTGAACTCATGACAGGCAGCTCAGGGGTA</left_flank>
        <right_flank>AGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATAGTACTTTGATTAGACCTTTTCTTGTAATCCCTGATTTCTGTCTGATTTCTAATTTGTCAACCTTCCCCACACTTATCAATTTAAACCCCCCGCAATCACTACTATCAGTTACTCTCTCGTTTATTTAACAAACCTCTCATTTTCCGATTTTGTGGATTTAAGACGTTCTCGAAGTGTCTCGTCGCTGTTTGATCTGCAATTAAACCATTTATTTGACCTTCGTTTTTTTTCTCAACAGAGCGTATTCACCTCGGAACACCCTCATCGTCAAGATGTGAATACACCCGGAGCAACTCGATTCGTTGATTTAGTTCATGTTTTAATTGAACTATGGTGTCCAGGTTCTTGTTGACACTCTCCTCGAGGAATTCATTTCTGGAAAAAAAATCATAAAAATATTAAAAGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGTGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAGACTTTGTATTGTTAACGAGAGTCCATATTTTATGAAATTCATTCTCGAATCAAAACTAAATCGGTTACTAAAGAAATTGATTATAGAAAATCACAAAAACCTGATAAGATTTTTGAAACAGAAACATTTTTTTCGACAGTTTACAAGGCTGCCTAACTGAAACTAAAACTCTATAAAAGCTCAGATTACCGTAAACAATCCAATAAAATGCTCCCAAACCATCAACCTTGAGCCAGTTTATCTCGATTCCTGTGAAAGGTATCAAAAATCTGTCAACTGATTAAAATGTTGGTGATATTATGATAAACATTCCGTCAATTGATCACTTTTTGATATCTTTTACGGAAATTGAGATATACGGGTTCAAGATTGACAGTTTGGAGTACA</canonical>
            <polymorphic>CAATAGTACTTTGATTAGACCTTTTCTTGTAATCCCTGATTTCTGTCTGATTTCTAATTTGTCAACCTTCCCCACACTTATCAATTTAAACCCCCCGCAATCACTACTATCAGTTACTCTCTCGTTTATTTAACAAACCTCTCATTTTCCGATTTTGTGGATTTAAGACGTTCTCGAAGTGTCTCGTCGCTGTTTGATCTGCAATTAAACCATTTATTTGACCTTCGTTTTTTTTCTCAACAGAGCGTATTCACCTCGGAACACCCTCATCGTCAAGATGTGAATACACCCGGAGCAACTCGATTCGTTGATTTAGTTCATGTTTTAATTGAACTATGGTGTCCAGGTTCTTGTTGACACTCTCCTCGAGGAATTCATTTCTGGAAAAAAAATCATAAAAATATTAAAAGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGTGTTGAACTCATGACAGGCAGCTCAGGGGTAYAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAGACTTTGTATTGTTAACGAGAGTCCATATTTTATGAAATTCATTCTCGAATCAAAACTAAATCGGTTACTAAAGAAATTGATTATAGAAAATCACAAAAACCTGATAAGATTTTTGAAACAGAAACATTTTTTTCGACAGTTTACAAGGCTGCCTAACTGAAACTAAAACTCTATAAAAGCTCAGATTACCGTAAACAATCCAATAAAATGCTCCCAAACCATCAACCTTGAGCCAGTTTATCTCGATTCCTGTGAAAGGTATCAAAAATCTGTCAACTGATTAAAATGTTGGTGATATTATGATAAACATTCCGTCAATTGATCACTTTTTGATATCTTTTACGGAAATTGAGATATACGGGTTCAAGATTGACAGTTTGGAGTACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 491 7 3</canonical_bands>
                <polymorphic_bands>990 7 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATATTAAAAGAGGCCAGAC</pcr_primer_p1>
		<pcr_primer_p2>ATGGACTCTCGTTAACAATACAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAAAATATTAAAAGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGTGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAGACTTTGTATTGTTAACGAGAGTCCAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATATTAAAAGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGTGTTGAACTCATGACAGGCAGCTCAGGGGTAYAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAGACTTTGTATTGTTAACGAGAGTCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28512</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>85523</contig_pos>
        <strand></strand>
        <context>tcaaaaatct[G/T]tcaactgatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCAACCTTGAGCCAGTTTATCTCGATTCCTGTGAAAGGTATCAAAAATCT</left_flank>
        <right_flank>TCAACTGATTAAAATGTTGGTGATATTATGATAAACATTCCGTCAATTGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAATCATAAAAATATTAAAAGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGTGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAGACTTTGTATTGTTAACGAGAGTCCATATTTTATGAAATTCATTCTCGAATCAAAACTAAATCGGTTACTAAAGAAATTGATTATAGAAAATCACAAAAACCTGATAAGATTTTTGAAACAGAAACATTTTTTTCGACAGTTTACAAGGCTGCCTAACTGAAACTAAAACTCTATAAAAGCTCAGATTACCGTAAACAATCCAATAAAATGCTCCCAAACCATCAACCTTGAGCCAGTTTATCTCGATTCCTGTGAAAGGTATCAAAAATCTGTCAACTGATTAAAATGTTGGTGATATTATGATAAACATTCCGTCAATTGATCACTTTTTGATATCTTTTACGGAAATTGAGATATACGGGTTCAAGATTGACAGTTTGGAGTACATTCTAATATTGTTTACAGTAAATTTGCCGATATAGAGTACTCTCAAAGAATTAATTATTCAAAAGCACAACAAACTTGATGAGGCTTTTGAAACCGAAAAAATTCTTCTCGAAATTTTCTTGGAAAAAGCTAGCTGAAATTAAAGCTCCATAAAAATACCGTAAACCGTCTAATAGAAACTTGCTCAATATTTGAACTTTGAGCTCAGTTAACTCAATTCCTGTAAACGATTTCAAAAAGTGGTTTACTGATAAACTATTTTTGGTAATATGGTAAACATTTTGTCAGTTGACCACTTTTGAAATCTTTCAGAGAAAATGAGATATATGGGCTCAACGCTGACGGTTTAGGGGCACTCTAGTAGTGTTGACAGTAAATTTGCTGA</canonical>
            <polymorphic>AAAAAAATCATAAAAATATTAAAAGAGGCCAGACACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGTGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAGACTTTGTATTGTTAACGAGAGTCCATATTTTATGAAATTCATTCTCGAATCAAAACTAAATCGGTTACTAAAGAAATTGATTATAGAAAATCACAAAAACCTGATAAGATTTTTGAAACAGAAACATTTTTTTCGACAGTTTACAAGGCTGCCTAACTGAAACTAAAACTCTATAAAAGCTCAGATTACCGTAAACAATCCAATAAAATGCTCCCAAACCATCAACCTTGAGCCAGTTTATCTCGATTCCTGTGAAAGGTATCAAAAATCTKTCAACTGATTAAAATGTTGGTGATATTATGATAAACATTCCGTCAATTGATCACTTTTTGATATCTTTTACGGAAATTGAGATATACGGGTTCAAGATTGACAGTTTGGAGTACATTCTAATATTGTTTACAGTAAATTTGCCGATATAGAGTACTCTCAAAGAATTAATTATTCAAAAGCACAACAAACTTGATGAGGCTTTTGAAACCGAAAAAATTCTTCTCGAAATTTTCTTGGAAAAAGCTAGCTGAAATTAAAGCTCCATAAAAATACCGTAAACCGTCTAATAGAAACTTGCTCAATATTTGAACTTTGAGCTCAGTTAACTCAATTCCTGTAAACGATTTCAAAAAGTGGTTTACTGATAAACTATTTTTGGTAATATGGTAAACATTTTGTCAGTTGACCACTTTTGAAATCTTTCAGAGAAAATGAGATATATGGGCTCAACGCTGACGGTTTAGGGGCACTCTAGTAGTGTTGACAGTAAATTTGCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>323 261 241 80 78 17</canonical_bands>
                <polymorphic_bands>584 241 80 78 17</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>170 150 128 126 81 78 71 52 47 30 20 17 15 15</canonical_bands>
                <polymorphic_bands>207 170 150 128 78 71 52 47 30 20 17 15 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCCTAACTGAAACTAAAACTCT</pcr_primer_p1>
		<pcr_primer_p2>AGTTTGTTGTGCTTTTGAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>314</pcr_amplicon_size>
		<canonical_amplicon>TGCCTAACTGAAACTAAAACTCTATAAAAGCTCAGATTACCGTAAACAATCCAATAAAATGCTCCCAAACCATCAACCTTGAGCCAGTTTATCTCGATTCCTGTGAAAGGTATCAAAAATCTGTCAACTGATTAAAATGTTGGTGATATTATGATAAACATTCCGTCAATTGATCACTTTTTGATATCTTTTACGGAAATTGAGATATACGGGTTCAAGATTGACAGTTTGGAGTACATTCTAATATTGTTTACAGTAAATTTGCCGATATAGAGTACTCTCAAAGAATTAATTATTCAAAAGCACAACAAACT</canonical_amplicon>
		<polymorphic_amplicon>TGCCTAACTGAAACTAAAACTCTATAAAAGCTCAGATTACCGTAAACAATCCAATAAAATGCTCCCAAACCATCAACCTTGAGCCAGTTTATCTCGATTCCTGTGAAAGGTATCAAAAATCTKTCAACTGATTAAAATGTTGGTGATATTATGATAAACATTCCGTCAATTGATCACTTTTTGATATCTTTTACGGAAATTGAGATATACGGGTTCAAGATTGACAGTTTGGAGTACATTCTAATATTGTTTACAGTAAATTTGCCGATATAGAGTACTCTCAAAGAATTAATTATTCAAAAGCACAACAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28513</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>110250</contig_pos>
        <strand></strand>
        <context>GAAGGACCTG[A/G]AAAATTGGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGTAACGTTTGCGGAATGAGTCGACTTGAATCAGTGCTTGAAGGACCTG</left_flank>
        <right_flank>AAAATTGGGAAATTAAAATAAAAAAGACTTTAAAAAAAGAATAATGCGTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTGGCTTCATGATACCCTAAAGCCATACATTGATAATTTGATAATTGGTTCTAAAAACTTACCTCTGGAAGTGGCAAGCGAAGAATGATTTCTTCCTGTTCAGTGTATCTAACTTTACCGGATGCGTTGTCTTCAAAGCGATTCCACGTCTGGAATCTCAATGAATTCGTTGGGTCAATATCTTCGTTCTGGTTTTGTTTCGAGACATTCTCAAAGAGGAACCTAATGTATTCTTCGACATCCTGTTGTTTAGCGGTAGAGAATTCTGGGTGACTTCCAGCAGCGACTCTTTTGAATTGCAGTGGTTTGATGTGGTTGTGTGTTGGGTCGGCTTCAGAAGAGTAGTCTCCACTGAGCATCGCATGGATAACCTTTGCGAACTGGGCGTTGAAATCATTGTGAAGCATTTCAATTGGGCATTTGAGCATCGTTTGAAGAGCCTGATCGCTGTAACGTTTGCGGAATGAGTCGACTTGAATCAGTGCTTGAAGGACCTGAAAAATTGGGAAATTAAAATAAAAAAGACTTTAAAAAAAGAATAATGCGTTCGGGGGGAATCGAACCCCCGTCGAATGCTTGGAAGGCATCCATGCTGACCATTACACCACGAACGCGCATATATTTGTCACAAGTCTTTTGAAGCATATAGAAGTGACGCATAGAGAACCTTCTTTCTGCGATAAACAGGATTGCATCCAATATTCTTTCTTCGACTGTCTTCGGCGTTTGGCCAGTTATCTTTATCGCTATTACAAGAAACATCCGCGTTCGTGGTGTAATGGTCAGCATGGATGCCTTCCAAGCATTCGACGGGGGTTCGATTCCCCCCGAACACATTATCTTTTTTTTCTTTCACGGAATGTTACCGAGACAGCTTACTGAGTTTTGATTTTAAATCAAAATCGGTCGAAAATAGGCTTAAATTGACAAAAAAACTGGCTCAAAATTCGCCTAAACTGGACTTAAATAAAACTGAAATTGACCGAAATTCGCTTAAA</canonical>
            <polymorphic>GGTTGGCTTCATGATACCCTAAAGCCATACATTGATAATTTGATAATTGGTTCTAAAAACTTACCTCTGGAAGTGGCAAGCGAAGAATGATTTCTTCCTGTTCAGTGTATCTAACTTTACCGGATGCGTTGTCTTCAAAGCGATTCCACGTCTGGAATCTCAATGAATTCGTTGGGTCAATATCTTCGTTCTGGTTTTGTTTCGAGACATTCTCAAAGAGGAACCTAATGTATTCTTCGACATCCTGTTGTTTAGCGGTAGAGAATTCTGGGTGACTTCCAGCAGCGACTCTTTTGAATTGCAGTGGTTTGATGTGGTTGTGTGTTGGGTCGGCTTCAGAAGAGTAGTCTCCACTGAGCATCGCATGGATAACCTTTGCGAACTGGGCGTTGAAATCATTGTGAAGCATTTCAATTGGGCATTTGAGCATCGTTTGAAGAGCCTGATCGCTGTAACGTTTGCGGAATGAGTCGACTTGAATCAGTGCTTGAAGGACCTGRAAAATTGGGAAATTAAAATAAAAAAGACTTTAAAAAAAGAATAATGCGTTCGGGGGGAATCGAACCCCCGTCGAATGCTTGGAAGGCATCCATGCTGACCATTACACCACGAACGCGCATATATTTGTCACAAGTCTTTTGAAGCATATAGAAGTGACGCATAGAGAACCTTCTTTCTGCGATAAACAGGATTGCATCCAATATTCTTTCTTCGACTGTCTTCGGCGTTTGGCCAGTTATCTTTATCGCTATTACAAGAAACATCCGCGTTCGTGGTGTAATGGTCAGCATGGATGCCTTCCAAGCATTCGACGGGGGTTCGATTCCCCCCGAACACATTATCTTTTTTTTCTTTCACGGAATGTTACCGAGACAGCTTACTGAGTTTTGATTTTAAATCAAAATCGGTCGAAAATAGGCTTAAATTGACAAAAAAACTGGCTCAAAATTCGCCTAAACTGGACTTAAATAAAACTGAAATTGACCGAAATTCGCTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGAGCATCGTTTGAAGA</pcr_primer_p1>
		<pcr_primer_p2>CTCTATGCGTCACTTCTATATGC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTTGAGCATCGTTTGAAGAGCCTGATCGCTGTAACGTTTGCGGAATGAGTCGACTTGAATCAGTGCTTGAAGGACCTGAAAAATTGGGAAATTAAAATAAAAAAGACTTTAAAAAAAGAATAATGCGTTCGGGGGGAATCGAACCCCCGTCGAATGCTTGGAAGGCATCCATGCTGACCATTACACCACGAACGCGCATATATTTGTCACAAGTCTTTTGAAGCATATAGAAGTGACGCATAGAG</canonical_amplicon>
		<polymorphic_amplicon>ATTTGAGCATCGTTTGAAGAGCCTGATCGCTGTAACGTTTGCGGAATGAGTCGACTTGAATCAGTGCTTGAAGGACCTGRAAAATTGGGAAATTAAAATAAAAAAGACTTTAAAAAAAGAATAATGCGTTCGGGGGGAATCGAACCCCCGTCGAATGCTTGGAAGGCATCCATGCTGACCATTACACCACGAACGCGCATATATTTGTCACAAGTCTTTTGAAGCATATAGAAGTGACGCATAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28514</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>110709</contig_pos>
        <strand></strand>
        <context>ttcgcctaaa[C/A]tggacttaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TCGAAAATAGGCTTAAATTGACAAAAAAACTGGCTCAAAATTCGCCTAAA</left_flank>
        <right_flank>TGGACTTAAATAAAACTGAAATTGACCGAAATTCGCTTAAAATTTGTCTA</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCGGAATGAGTCGACTTGAATCAGTGCTTGAAGGACCTGAAAAATTGGGAAATTAAAATAAAAAAGACTTTAAAAAAAGAATAATGCGTTCGGGGGGAATCGAACCCCCGTCGAATGCTTGGAAGGCATCCATGCTGACCATTACACCACGAACGCGCATATATTTGTCACAAGTCTTTTGAAGCATATAGAAGTGACGCATAGAGAACCTTCTTTCTGCGATAAACAGGATTGCATCCAATATTCTTTCTTCGACTGTCTTCGGCGTTTGGCCAGTTATCTTTATCGCTATTACAAGAAACATCCGCGTTCGTGGTGTAATGGTCAGCATGGATGCCTTCCAAGCATTCGACGGGGGTTCGATTCCCCCCGAACACATTATCTTTTTTTTCTTTCACGGAATGTTACCGAGACAGCTTACTGAGTTTTGATTTTAAATCAAAATCGGTCGAAAATAGGCTTAAATTGACAAAAAAACTGGCTCAAAATTCGCCTAAACTGGACTTAAATAAAACTGAAATTGACCGAAATTCGCTTAAAATTTGTCTAAATACGCCTAATTTGGCTGGAACTCGGTAAAACTGGTCTCGGTCTGGGCTAAATTGGGTGAAAATCAGCATCAACGGGCTTGAAATAGTCCGAAATAGATAAAAATTGGCCTCAGCTGGCCTAAGATTGACCTAAATTGACTAAAATATTCTGAATTTTGCCTAAAATTGATCTAGAATCGGCCTGAAATAGTATAAATTTGAAATCGGTCTAAAATGGCATGAATATGTCTTAAATTTACCTAAAATGGACCTAGCCTGAATCTTGCCGAAGAAAGAAAAGTTTAGTCTTACCGAGTTCATATAACAACTGCTTCCAGTGTTAATGAGTCCAGTGTAGCCGGGACCGAAGATTGGCTCTAACATCGCTCCATCCTCAGTACAACGTGCCCATTCCCATTTTTCATTCATATCCAACTCCATTTCCAGTGTGCTCTTGGCAGTTTTCTCC</canonical>
            <polymorphic>TGCGGAATGAGTCGACTTGAATCAGTGCTTGAAGGACCTGAAAAATTGGGAAATTAAAATAAAAAAGACTTTAAAAAAAGAATAATGCGTTCGGGGGGAATCGAACCCCCGTCGAATGCTTGGAAGGCATCCATGCTGACCATTACACCACGAACGCGCATATATTTGTCACAAGTCTTTTGAAGCATATAGAAGTGACGCATAGAGAACCTTCTTTCTGCGATAAACAGGATTGCATCCAATATTCTTTCTTCGACTGTCTTCGGCGTTTGGCCAGTTATCTTTATCGCTATTACAAGAAACATCCGCGTTCGTGGTGTAATGGTCAGCATGGATGCCTTCCAAGCATTCGACGGGGGTTCGATTCCCCCCGAACACATTATCTTTTTTTTCTTTCACGGAATGTTACCGAGACAGCTTACTGAGTTTTGATTTTAAATCAAAATCGGTCGAAAATAGGCTTAAATTGACAAAAAAACTGGCTCAAAATTCGCCTAAAMTGGACTTAAATAAAACTGAAATTGACCGAAATTCGCTTAAAATTTGTCTAAATACGCCTAATTTGGCTGGAACTCGGTAAAACTGGTCTCGGTCTGGGCTAAATTGGGTGAAAATCAGCATCAACGGGCTTGAAATAGTCCGAAATAGATAAAAATTGGCCTCAGCTGGCCTAAGATTGACCTAAATTGACTAAAATATTCTGAATTTTGCCTAAAATTGATCTAGAATCGGCCTGAAATAGTATAAATTTGAAATCGGTCTAAAATGGCATGAATATGTCTTAAATTTACCTAAAATGGACCTAGCCTGAATCTTGCCGAAGAAAGAAAAGTTTAGTCTTACCGAGTTCATATAACAACTGCTTCCAGTGTTAATGAGTCCAGTGTAGCCGGGACCGAAGATTGGCTCTAACATCGCTCCATCCTCAGTACAACGTGCCCATTCCCATTTTTCATTCATATCCAACTCCATTTCCAGTGTGCTCTTGGCAGTTTTCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGCTTACTGAGTTTTGATTTT</pcr_primer_p1>
		<pcr_primer_p2>CACTGGAAGCAGTTGTTATATG</pcr_primer_p2>
		<pcr_amplicon_size>458</pcr_amplicon_size>
		<canonical_amplicon>ACAGCTTACTGAGTTTTGATTTTAAATCAAAATCGGTCGAAAATAGGCTTAAATTGACAAAAAAACTGGCTCAAAATTCGCCTAAACTGGACTTAAATAAAACTGAAATTGACCGAAATTCGCTTAAAATTTGTCTAAATACGCCTAATTTGGCTGGAACTCGGTAAAACTGGTCTCGGTCTGGGCTAAATTGGGTGAAAATCAGCATCAACGGGCTTGAAATAGTCCGAAATAGATAAAAATTGGCCTCAGCTGGCCTAAGATTGACCTAAATTGACTAAAATATTCTGAATTTTGCCTAAAATTGATCTAGAATCGGCCTGAAATAGTATAAATTTGAAATCGGTCTAAAATGGCATGAATATGTCTTAAATTTACCTAAAATGGACCTAGCCTGAATCTTGCCGAAGAAAGAAAAGTTTAGTCTTACCGAGTTCATATAACAACTGCTTCCAGTG</canonical_amplicon>
		<polymorphic_amplicon>ACAGCTTACTGAGTTTTGATTTTAAATCAAAATCGGTCGAAAATAGGCTTAAATTGACAAAAAAACTGGCTCAAAATTCGCCTAAAMTGGACTTAAATAAAACTGAAATTGACCGAAATTCGCTTAAAATTTGTCTAAATACGCCTAATTTGGCTGGAACTCGGTAAAACTGGTCTCGGTCTGGGCTAAATTGGGTGAAAATCAGCATCAACGGGCTTGAAATAGTCCGAAATAGATAAAAATTGGCCTCAGCTGGCCTAAGATTGACCTAAATTGACTAAAATATTCTGAATTTTGCCTAAAATTGATCTAGAATCGGCCTGAAATAGTATAAATTTGAAATCGGTCTAAAATGGCATGAATATGTCTTAAATTTACCTAAAATGGACCTAGCCTGAATCTTGCCGAAGAAAGAAAAGTTTAGTCTTACCGAGTTCATATAACAACTGCTTCCAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28515</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>110722</contig_pos>
        <strand></strand>
        <context>gacttaaata[A/T]aactgaaatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAATTGACAAAAAAACTGGCTCAAAATTCGCCTAAACTGGACTTAAATA</left_flank>
        <right_flank>AACTGAAATTGACCGAAATTCGCTTAAAATTTGTCTAAATACGCCTAATT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTTGAATCAGTGCTTGAAGGACCTGAAAAATTGGGAAATTAAAATAAAAAAGACTTTAAAAAAAGAATAATGCGTTCGGGGGGAATCGAACCCCCGTCGAATGCTTGGAAGGCATCCATGCTGACCATTACACCACGAACGCGCATATATTTGTCACAAGTCTTTTGAAGCATATAGAAGTGACGCATAGAGAACCTTCTTTCTGCGATAAACAGGATTGCATCCAATATTCTTTCTTCGACTGTCTTCGGCGTTTGGCCAGTTATCTTTATCGCTATTACAAGAAACATCCGCGTTCGTGGTGTAATGGTCAGCATGGATGCCTTCCAAGCATTCGACGGGGGTTCGATTCCCCCCGAACACATTATCTTTTTTTTCTTTCACGGAATGTTACCGAGACAGCTTACTGAGTTTTGATTTTAAATCAAAATCGGTCGAAAATAGGCTTAAATTGACAAAAAAACTGGCTCAAAATTCGCCTAAACTGGACTTAAATAAAACTGAAATTGACCGAAATTCGCTTAAAATTTGTCTAAATACGCCTAATTTGGCTGGAACTCGGTAAAACTGGTCTCGGTCTGGGCTAAATTGGGTGAAAATCAGCATCAACGGGCTTGAAATAGTCCGAAATAGATAAAAATTGGCCTCAGCTGGCCTAAGATTGACCTAAATTGACTAAAATATTCTGAATTTTGCCTAAAATTGATCTAGAATCGGCCTGAAATAGTATAAATTTGAAATCGGTCTAAAATGGCATGAATATGTCTTAAATTTACCTAAAATGGACCTAGCCTGAATCTTGCCGAAGAAAGAAAAGTTTAGTCTTACCGAGTTCATATAACAACTGCTTCCAGTGTTAATGAGTCCAGTGTAGCCGGGACCGAAGATTGGCTCTAACATCGCTCCATCCTCAGTACAACGTGCCCATTCCCATTTTTCATTCATATCCAACTCCATTTCCAGTGTGCTCTTGGCAGTTTTCTCCATTTTCTCTGGGT</canonical>
            <polymorphic>GACTTGAATCAGTGCTTGAAGGACCTGAAAAATTGGGAAATTAAAATAAAAAAGACTTTAAAAAAAGAATAATGCGTTCGGGGGGAATCGAACCCCCGTCGAATGCTTGGAAGGCATCCATGCTGACCATTACACCACGAACGCGCATATATTTGTCACAAGTCTTTTGAAGCATATAGAAGTGACGCATAGAGAACCTTCTTTCTGCGATAAACAGGATTGCATCCAATATTCTTTCTTCGACTGTCTTCGGCGTTTGGCCAGTTATCTTTATCGCTATTACAAGAAACATCCGCGTTCGTGGTGTAATGGTCAGCATGGATGCCTTCCAAGCATTCGACGGGGGTTCGATTCCCCCCGAACACATTATCTTTTTTTTCTTTCACGGAATGTTACCGAGACAGCTTACTGAGTTTTGATTTTAAATCAAAATCGGTCGAAAATAGGCTTAAATTGACAAAAAAACTGGCTCAAAATTCGCCTAAACTGGACTTAAATAWAACTGAAATTGACCGAAATTCGCTTAAAATTTGTCTAAATACGCCTAATTTGGCTGGAACTCGGTAAAACTGGTCTCGGTCTGGGCTAAATTGGGTGAAAATCAGCATCAACGGGCTTGAAATAGTCCGAAATAGATAAAAATTGGCCTCAGCTGGCCTAAGATTGACCTAAATTGACTAAAATATTCTGAATTTTGCCTAAAATTGATCTAGAATCGGCCTGAAATAGTATAAATTTGAAATCGGTCTAAAATGGCATGAATATGTCTTAAATTTACCTAAAATGGACCTAGCCTGAATCTTGCCGAAGAAAGAAAAGTTTAGTCTTACCGAGTTCATATAACAACTGCTTCCAGTGTTAATGAGTCCAGTGTAGCCGGGACCGAAGATTGGCTCTAACATCGCTCCATCCTCAGTACAACGTGCCCATTCCCATTTTTCATTCATATCCAACTCCATTTCCAGTGTGCTCTTGGCAGTTTTCTCCATTTTCTCTGGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGCTTACTGAGTTTTGATTTT</pcr_primer_p1>
		<pcr_primer_p2>CACTGGAAGCAGTTGTTATATG</pcr_primer_p2>
		<pcr_amplicon_size>458</pcr_amplicon_size>
		<canonical_amplicon>ACAGCTTACTGAGTTTTGATTTTAAATCAAAATCGGTCGAAAATAGGCTTAAATTGACAAAAAAACTGGCTCAAAATTCGCCTAAACTGGACTTAAATAAAACTGAAATTGACCGAAATTCGCTTAAAATTTGTCTAAATACGCCTAATTTGGCTGGAACTCGGTAAAACTGGTCTCGGTCTGGGCTAAATTGGGTGAAAATCAGCATCAACGGGCTTGAAATAGTCCGAAATAGATAAAAATTGGCCTCAGCTGGCCTAAGATTGACCTAAATTGACTAAAATATTCTGAATTTTGCCTAAAATTGATCTAGAATCGGCCTGAAATAGTATAAATTTGAAATCGGTCTAAAATGGCATGAATATGTCTTAAATTTACCTAAAATGGACCTAGCCTGAATCTTGCCGAAGAAAGAAAAGTTTAGTCTTACCGAGTTCATATAACAACTGCTTCCAGTG</canonical_amplicon>
		<polymorphic_amplicon>ACAGCTTACTGAGTTTTGATTTTAAATCAAAATCGGTCGAAAATAGGCTTAAATTGACAAAAAAACTGGCTCAAAATTCGCCTAAACTGGACTTAAATAWAACTGAAATTGACCGAAATTCGCTTAAAATTTGTCTAAATACGCCTAATTTGGCTGGAACTCGGTAAAACTGGTCTCGGTCTGGGCTAAATTGGGTGAAAATCAGCATCAACGGGCTTGAAATAGTCCGAAATAGATAAAAATTGGCCTCAGCTGGCCTAAGATTGACCTAAATTGACTAAAATATTCTGAATTTTGCCTAAAATTGATCTAGAATCGGCCTGAAATAGTATAAATTTGAAATCGGTCTAAAATGGCATGAATATGTCTTAAATTTACCTAAAATGGACCTAGCCTGAATCTTGCCGAAGAAAGAAAAGTTTAGTCTTACCGAGTTCATATAACAACTGCTTCCAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28516</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>110756</contig_pos>
        <strand></strand>
        <context>ttaaaatttg[T/C]ctaaatacgc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAACTGGACTTAAATAAAACTGAAATTGACCGAAATTCGCTTAAAATTTG</left_flank>
        <right_flank>CTAAATACGCCTAATTTGGCTGGAACTCGGTAAAACTGGTCTCGGTCTGG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGAAATTAAAATAAAAAAGACTTTAAAAAAAGAATAATGCGTTCGGGGGGAATCGAACCCCCGTCGAATGCTTGGAAGGCATCCATGCTGACCATTACACCACGAACGCGCATATATTTGTCACAAGTCTTTTGAAGCATATAGAAGTGACGCATAGAGAACCTTCTTTCTGCGATAAACAGGATTGCATCCAATATTCTTTCTTCGACTGTCTTCGGCGTTTGGCCAGTTATCTTTATCGCTATTACAAGAAACATCCGCGTTCGTGGTGTAATGGTCAGCATGGATGCCTTCCAAGCATTCGACGGGGGTTCGATTCCCCCCGAACACATTATCTTTTTTTTCTTTCACGGAATGTTACCGAGACAGCTTACTGAGTTTTGATTTTAAATCAAAATCGGTCGAAAATAGGCTTAAATTGACAAAAAAACTGGCTCAAAATTCGCCTAAACTGGACTTAAATAAAACTGAAATTGACCGAAATTCGCTTAAAATTTGTCTAAATACGCCTAATTTGGCTGGAACTCGGTAAAACTGGTCTCGGTCTGGGCTAAATTGGGTGAAAATCAGCATCAACGGGCTTGAAATAGTCCGAAATAGATAAAAATTGGCCTCAGCTGGCCTAAGATTGACCTAAATTGACTAAAATATTCTGAATTTTGCCTAAAATTGATCTAGAATCGGCCTGAAATAGTATAAATTTGAAATCGGTCTAAAATGGCATGAATATGTCTTAAATTTACCTAAAATGGACCTAGCCTGAATCTTGCCGAAGAAAGAAAAGTTTAGTCTTACCGAGTTCATATAACAACTGCTTCCAGTGTTAATGAGTCCAGTGTAGCCGGGACCGAAGATTGGCTCTAACATCGCTCCATCCTCAGTACAACGTGCCCATTCCCATTTTTCATTCATATCCAACTCCATTTCCAGTGTGCTCTTGGCAGTTTTCTCCATTTTCTCTGGGTCCAAACCGAAATGCATCAGATGTTTCACTATATT</canonical>
            <polymorphic>GGGAAATTAAAATAAAAAAGACTTTAAAAAAAGAATAATGCGTTCGGGGGGAATCGAACCCCCGTCGAATGCTTGGAAGGCATCCATGCTGACCATTACACCACGAACGCGCATATATTTGTCACAAGTCTTTTGAAGCATATAGAAGTGACGCATAGAGAACCTTCTTTCTGCGATAAACAGGATTGCATCCAATATTCTTTCTTCGACTGTCTTCGGCGTTTGGCCAGTTATCTTTATCGCTATTACAAGAAACATCCGCGTTCGTGGTGTAATGGTCAGCATGGATGCCTTCCAAGCATTCGACGGGGGTTCGATTCCCCCCGAACACATTATCTTTTTTTTCTTTCACGGAATGTTACCGAGACAGCTTACTGAGTTTTGATTTTAAATCAAAATCGGTCGAAAATAGGCTTAAATTGACAAAAAAACTGGCTCAAAATTCGCCTAAACTGGACTTAAATAAAACTGAAATTGACCGAAATTCGCTTAAAATTTGYCTAAATACGCCTAATTTGGCTGGAACTCGGTAAAACTGGTCTCGGTCTGGGCTAAATTGGGTGAAAATCAGCATCAACGGGCTTGAAATAGTCCGAAATAGATAAAAATTGGCCTCAGCTGGCCTAAGATTGACCTAAATTGACTAAAATATTCTGAATTTTGCCTAAAATTGATCTAGAATCGGCCTGAAATAGTATAAATTTGAAATCGGTCTAAAATGGCATGAATATGTCTTAAATTTACCTAAAATGGACCTAGCCTGAATCTTGCCGAAGAAAGAAAAGTTTAGTCTTACCGAGTTCATATAACAACTGCTTCCAGTGTTAATGAGTCCAGTGTAGCCGGGACCGAAGATTGGCTCTAACATCGCTCCATCCTCAGTACAACGTGCCCATTCCCATTTTTCATTCATATCCAACTCCATTTCCAGTGTGCTCTTGGCAGTTTTCTCCATTTTCTCTGGGTCCAAACCGAAATGCATCAGATGTTTCACTATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGCTTACTGAGTTTTGATTTT</pcr_primer_p1>
		<pcr_primer_p2>CACTGGAAGCAGTTGTTATATG</pcr_primer_p2>
		<pcr_amplicon_size>458</pcr_amplicon_size>
		<canonical_amplicon>ACAGCTTACTGAGTTTTGATTTTAAATCAAAATCGGTCGAAAATAGGCTTAAATTGACAAAAAAACTGGCTCAAAATTCGCCTAAACTGGACTTAAATAAAACTGAAATTGACCGAAATTCGCTTAAAATTTGTCTAAATACGCCTAATTTGGCTGGAACTCGGTAAAACTGGTCTCGGTCTGGGCTAAATTGGGTGAAAATCAGCATCAACGGGCTTGAAATAGTCCGAAATAGATAAAAATTGGCCTCAGCTGGCCTAAGATTGACCTAAATTGACTAAAATATTCTGAATTTTGCCTAAAATTGATCTAGAATCGGCCTGAAATAGTATAAATTTGAAATCGGTCTAAAATGGCATGAATATGTCTTAAATTTACCTAAAATGGACCTAGCCTGAATCTTGCCGAAGAAAGAAAAGTTTAGTCTTACCGAGTTCATATAACAACTGCTTCCAGTG</canonical_amplicon>
		<polymorphic_amplicon>ACAGCTTACTGAGTTTTGATTTTAAATCAAAATCGGTCGAAAATAGGCTTAAATTGACAAAAAAACTGGCTCAAAATTCGCCTAAACTGGACTTAAATAAAACTGAAATTGACCGAAATTCGCTTAAAATTTGYCTAAATACGCCTAATTTGGCTGGAACTCGGTAAAACTGGTCTCGGTCTGGGCTAAATTGGGTGAAAATCAGCATCAACGGGCTTGAAATAGTCCGAAATAGATAAAAATTGGCCTCAGCTGGCCTAAGATTGACCTAAATTGACTAAAATATTCTGAATTTTGCCTAAAATTGATCTAGAATCGGCCTGAAATAGTATAAATTTGAAATCGGTCTAAAATGGCATGAATATGTCTTAAATTTACCTAAAATGGACCTAGCCTGAATCTTGCCGAAGAAAGAAAAGTTTAGTCTTACCGAGTTCATATAACAACTGCTTCCAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28517</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>110802</contig_pos>
        <strand></strand>
        <context>ctggtctcgg[T/C]ctgggctaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTGTCTAAATACGCCTAATTTGGCTGGAACTCGGTAAAACTGGTCTCGG</left_flank>
        <right_flank>CTGGGCTAAATTGGGTGAAAATCAGCATCAACGGGCTTGAAATAGTCCGA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGGGAATCGAACCCCCGTCGAATGCTTGGAAGGCATCCATGCTGACCATTACACCACGAACGCGCATATATTTGTCACAAGTCTTTTGAAGCATATAGAAGTGACGCATAGAGAACCTTCTTTCTGCGATAAACAGGATTGCATCCAATATTCTTTCTTCGACTGTCTTCGGCGTTTGGCCAGTTATCTTTATCGCTATTACAAGAAACATCCGCGTTCGTGGTGTAATGGTCAGCATGGATGCCTTCCAAGCATTCGACGGGGGTTCGATTCCCCCCGAACACATTATCTTTTTTTTCTTTCACGGAATGTTACCGAGACAGCTTACTGAGTTTTGATTTTAAATCAAAATCGGTCGAAAATAGGCTTAAATTGACAAAAAAACTGGCTCAAAATTCGCCTAAACTGGACTTAAATAAAACTGAAATTGACCGAAATTCGCTTAAAATTTGTCTAAATACGCCTAATTTGGCTGGAACTCGGTAAAACTGGTCTCGGTCTGGGCTAAATTGGGTGAAAATCAGCATCAACGGGCTTGAAATAGTCCGAAATAGATAAAAATTGGCCTCAGCTGGCCTAAGATTGACCTAAATTGACTAAAATATTCTGAATTTTGCCTAAAATTGATCTAGAATCGGCCTGAAATAGTATAAATTTGAAATCGGTCTAAAATGGCATGAATATGTCTTAAATTTACCTAAAATGGACCTAGCCTGAATCTTGCCGAAGAAAGAAAAGTTTAGTCTTACCGAGTTCATATAACAACTGCTTCCAGTGTTAATGAGTCCAGTGTAGCCGGGACCGAAGATTGGCTCTAACATCGCTCCATCCTCAGTACAACGTGCCCATTCCCATTTTTCATTCATATCCAACTCCATTTCCAGTGTGCTCTTGGCAGTTTTCTCCATTTTCTCTGGGTCCAAACCGAAATGCATCAGATGTTTCACTATATTTGGATCGATCACAGCGTCGTCCTCCTCATAACTGAAAACGTCGATA</canonical>
            <polymorphic>GGGGGAATCGAACCCCCGTCGAATGCTTGGAAGGCATCCATGCTGACCATTACACCACGAACGCGCATATATTTGTCACAAGTCTTTTGAAGCATATAGAAGTGACGCATAGAGAACCTTCTTTCTGCGATAAACAGGATTGCATCCAATATTCTTTCTTCGACTGTCTTCGGCGTTTGGCCAGTTATCTTTATCGCTATTACAAGAAACATCCGCGTTCGTGGTGTAATGGTCAGCATGGATGCCTTCCAAGCATTCGACGGGGGTTCGATTCCCCCCGAACACATTATCTTTTTTTTCTTTCACGGAATGTTACCGAGACAGCTTACTGAGTTTTGATTTTAAATCAAAATCGGTCGAAAATAGGCTTAAATTGACAAAAAAACTGGCTCAAAATTCGCCTAAACTGGACTTAAATAAAACTGAAATTGACCGAAATTCGCTTAAAATTTGTCTAAATACGCCTAATTTGGCTGGAACTCGGTAAAACTGGTCTCGGYCTGGGCTAAATTGGGTGAAAATCAGCATCAACGGGCTTGAAATAGTCCGAAATAGATAAAAATTGGCCTCAGCTGGCCTAAGATTGACCTAAATTGACTAAAATATTCTGAATTTTGCCTAAAATTGATCTAGAATCGGCCTGAAATAGTATAAATTTGAAATCGGTCTAAAATGGCATGAATATGTCTTAAATTTACCTAAAATGGACCTAGCCTGAATCTTGCCGAAGAAAGAAAAGTTTAGTCTTACCGAGTTCATATAACAACTGCTTCCAGTGTTAATGAGTCCAGTGTAGCCGGGACCGAAGATTGGCTCTAACATCGCTCCATCCTCAGTACAACGTGCCCATTCCCATTTTTCATTCATATCCAACTCCATTTCCAGTGTGCTCTTGGCAGTTTTCTCCATTTTCTCTGGGTCCAAACCGAAATGCATCAGATGTTTCACTATATTTGGATCGATCACAGCGTCGTCCTCCTCATAACTGAAAACGTCGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGCTTACTGAGTTTTGATTTT</pcr_primer_p1>
		<pcr_primer_p2>CACTGGAAGCAGTTGTTATATG</pcr_primer_p2>
		<pcr_amplicon_size>458</pcr_amplicon_size>
		<canonical_amplicon>ACAGCTTACTGAGTTTTGATTTTAAATCAAAATCGGTCGAAAATAGGCTTAAATTGACAAAAAAACTGGCTCAAAATTCGCCTAAACTGGACTTAAATAAAACTGAAATTGACCGAAATTCGCTTAAAATTTGTCTAAATACGCCTAATTTGGCTGGAACTCGGTAAAACTGGTCTCGGTCTGGGCTAAATTGGGTGAAAATCAGCATCAACGGGCTTGAAATAGTCCGAAATAGATAAAAATTGGCCTCAGCTGGCCTAAGATTGACCTAAATTGACTAAAATATTCTGAATTTTGCCTAAAATTGATCTAGAATCGGCCTGAAATAGTATAAATTTGAAATCGGTCTAAAATGGCATGAATATGTCTTAAATTTACCTAAAATGGACCTAGCCTGAATCTTGCCGAAGAAAGAAAAGTTTAGTCTTACCGAGTTCATATAACAACTGCTTCCAGTG</canonical_amplicon>
		<polymorphic_amplicon>ACAGCTTACTGAGTTTTGATTTTAAATCAAAATCGGTCGAAAATAGGCTTAAATTGACAAAAAAACTGGCTCAAAATTCGCCTAAACTGGACTTAAATAAAACTGAAATTGACCGAAATTCGCTTAAAATTTGTCTAAATACGCCTAATTTGGCTGGAACTCGGTAAAACTGGTCTCGGYCTGGGCTAAATTGGGTGAAAATCAGCATCAACGGGCTTGAAATAGTCCGAAATAGATAAAAATTGGCCTCAGCTGGCCTAAGATTGACCTAAATTGACTAAAATATTCTGAATTTTGCCTAAAATTGATCTAGAATCGGCCTGAAATAGTATAAATTTGAAATCGGTCTAAAATGGCATGAATATGTCTTAAATTTACCTAAAATGGACCTAGCCTGAATCTTGCCGAAGAAAGAAAAGTTTAGTCTTACCGAGTTCATATAACAACTGCTTCCAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28518</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>110953</contig_pos>
        <strand></strand>
        <context>ctgaaatagt[A/C]taaatttgaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATATTCTGAATTTTGCCTAAAATTGATCTAGAATCGGCCTGAAATAGT</left_flank>
        <right_flank>TAAATTTGAAATCGGTCTAAAATGGCATGAATATGTCTTAAATTTACCTA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTTCTTCGACTGTCTTCGGCGTTTGGCCAGTTATCTTTATCGCTATTACAAGAAACATCCGCGTTCGTGGTGTAATGGTCAGCATGGATGCCTTCCAAGCATTCGACGGGGGTTCGATTCCCCCCGAACACATTATCTTTTTTTTCTTTCACGGAATGTTACCGAGACAGCTTACTGAGTTTTGATTTTAAATCAAAATCGGTCGAAAATAGGCTTAAATTGACAAAAAAACTGGCTCAAAATTCGCCTAAACTGGACTTAAATAAAACTGAAATTGACCGAAATTCGCTTAAAATTTGTCTAAATACGCCTAATTTGGCTGGAACTCGGTAAAACTGGTCTCGGTCTGGGCTAAATTGGGTGAAAATCAGCATCAACGGGCTTGAAATAGTCCGAAATAGATAAAAATTGGCCTCAGCTGGCCTAAGATTGACCTAAATTGACTAAAATATTCTGAATTTTGCCTAAAATTGATCTAGAATCGGCCTGAAATAGTATAAATTTGAAATCGGTCTAAAATGGCATGAATATGTCTTAAATTTACCTAAAATGGACCTAGCCTGAATCTTGCCGAAGAAAGAAAAGTTTAGTCTTACCGAGTTCATATAACAACTGCTTCCAGTGTTAATGAGTCCAGTGTAGCCGGGACCGAAGATTGGCTCTAACATCGCTCCATCCTCAGTACAACGTGCCCATTCCCATTTTTCATTCATATCCAACTCCATTTCCAGTGTGCTCTTGGCAGTTTTCTCCATTTTCTCTGGGTCCAAACCGAAATGCATCAGATGTTTCACTATATTTGGATCGATCACAGCGTCGTCCTCCTCATAACTGAAAACGTCGATAGATTCCAAATTCGAAGAAATTGTTCCCAATTTGACAACAAGGGGGAATCGTGTGGCATTGTAGTAGTCTTGCATATGTCCGTTTCCACGAGTCTTCTCTCCATTGGCAAGAAATTGGCTTCGACCGCATCGAATCGCTCCATCGGTCAAAT</canonical>
            <polymorphic>TTCTTTCTTCGACTGTCTTCGGCGTTTGGCCAGTTATCTTTATCGCTATTACAAGAAACATCCGCGTTCGTGGTGTAATGGTCAGCATGGATGCCTTCCAAGCATTCGACGGGGGTTCGATTCCCCCCGAACACATTATCTTTTTTTTCTTTCACGGAATGTTACCGAGACAGCTTACTGAGTTTTGATTTTAAATCAAAATCGGTCGAAAATAGGCTTAAATTGACAAAAAAACTGGCTCAAAATTCGCCTAAACTGGACTTAAATAAAACTGAAATTGACCGAAATTCGCTTAAAATTTGTCTAAATACGCCTAATTTGGCTGGAACTCGGTAAAACTGGTCTCGGTCTGGGCTAAATTGGGTGAAAATCAGCATCAACGGGCTTGAAATAGTCCGAAATAGATAAAAATTGGCCTCAGCTGGCCTAAGATTGACCTAAATTGACTAAAATATTCTGAATTTTGCCTAAAATTGATCTAGAATCGGCCTGAAATAGTMTAAATTTGAAATCGGTCTAAAATGGCATGAATATGTCTTAAATTTACCTAAAATGGACCTAGCCTGAATCTTGCCGAAGAAAGAAAAGTTTAGTCTTACCGAGTTCATATAACAACTGCTTCCAGTGTTAATGAGTCCAGTGTAGCCGGGACCGAAGATTGGCTCTAACATCGCTCCATCCTCAGTACAACGTGCCCATTCCCATTTTTCATTCATATCCAACTCCATTTCCAGTGTGCTCTTGGCAGTTTTCTCCATTTTCTCTGGGTCCAAACCGAAATGCATCAGATGTTTCACTATATTTGGATCGATCACAGCGTCGTCCTCCTCATAACTGAAAACGTCGATAGATTCCAAATTCGAAGAAATTGTTCCCAATTTGACAACAAGGGGGAATCGTGTGGCATTGTAGTAGTCTTGCATATGTCCGTTTCCACGAGTCTTCTCTCCATTGGCAAGAAATTGGCTTCGACCGCATCGAATCGCTCCATCGGTCAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGCTTACTGAGTTTTGATTTT</pcr_primer_p1>
		<pcr_primer_p2>CACTGGAAGCAGTTGTTATATG</pcr_primer_p2>
		<pcr_amplicon_size>458</pcr_amplicon_size>
		<canonical_amplicon>ACAGCTTACTGAGTTTTGATTTTAAATCAAAATCGGTCGAAAATAGGCTTAAATTGACAAAAAAACTGGCTCAAAATTCGCCTAAACTGGACTTAAATAAAACTGAAATTGACCGAAATTCGCTTAAAATTTGTCTAAATACGCCTAATTTGGCTGGAACTCGGTAAAACTGGTCTCGGTCTGGGCTAAATTGGGTGAAAATCAGCATCAACGGGCTTGAAATAGTCCGAAATAGATAAAAATTGGCCTCAGCTGGCCTAAGATTGACCTAAATTGACTAAAATATTCTGAATTTTGCCTAAAATTGATCTAGAATCGGCCTGAAATAGTATAAATTTGAAATCGGTCTAAAATGGCATGAATATGTCTTAAATTTACCTAAAATGGACCTAGCCTGAATCTTGCCGAAGAAAGAAAAGTTTAGTCTTACCGAGTTCATATAACAACTGCTTCCAGTG</canonical_amplicon>
		<polymorphic_amplicon>ACAGCTTACTGAGTTTTGATTTTAAATCAAAATCGGTCGAAAATAGGCTTAAATTGACAAAAAAACTGGCTCAAAATTCGCCTAAACTGGACTTAAATAAAACTGAAATTGACCGAAATTCGCTTAAAATTTGTCTAAATACGCCTAATTTGGCTGGAACTCGGTAAAACTGGTCTCGGTCTGGGCTAAATTGGGTGAAAATCAGCATCAACGGGCTTGAAATAGTCCGAAATAGATAAAAATTGGCCTCAGCTGGCCTAAGATTGACCTAAATTGACTAAAATATTCTGAATTTTGCCTAAAATTGATCTAGAATCGGCCTGAAATAGTMTAAATTTGAAATCGGTCTAAAATGGCATGAATATGTCTTAAATTTACCTAAAATGGACCTAGCCTGAATCTTGCCGAAGAAAGAAAAGTTTAGTCTTACCGAGTTCATATAACAACTGCTTCCAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28519</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>110999</contig_pos>
        <strand></strand>
        <context>tcttaaattt[A/T]cctaaaatgg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGTATAAATTTGAAATCGGTCTAAAATGGCATGAATATGTCTTAAATTT</left_flank>
        <right_flank>CCTAAAATGGACCTAGCCTGAATCTTGCCGAAGAAAGAAAAGTTTAGTCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTACAAGAAACATCCGCGTTCGTGGTGTAATGGTCAGCATGGATGCCTTCCAAGCATTCGACGGGGGTTCGATTCCCCCCGAACACATTATCTTTTTTTTCTTTCACGGAATGTTACCGAGACAGCTTACTGAGTTTTGATTTTAAATCAAAATCGGTCGAAAATAGGCTTAAATTGACAAAAAAACTGGCTCAAAATTCGCCTAAACTGGACTTAAATAAAACTGAAATTGACCGAAATTCGCTTAAAATTTGTCTAAATACGCCTAATTTGGCTGGAACTCGGTAAAACTGGTCTCGGTCTGGGCTAAATTGGGTGAAAATCAGCATCAACGGGCTTGAAATAGTCCGAAATAGATAAAAATTGGCCTCAGCTGGCCTAAGATTGACCTAAATTGACTAAAATATTCTGAATTTTGCCTAAAATTGATCTAGAATCGGCCTGAAATAGTATAAATTTGAAATCGGTCTAAAATGGCATGAATATGTCTTAAATTTACCTAAAATGGACCTAGCCTGAATCTTGCCGAAGAAAGAAAAGTTTAGTCTTACCGAGTTCATATAACAACTGCTTCCAGTGTTAATGAGTCCAGTGTAGCCGGGACCGAAGATTGGCTCTAACATCGCTCCATCCTCAGTACAACGTGCCCATTCCCATTTTTCATTCATATCCAACTCCATTTCCAGTGTGCTCTTGGCAGTTTTCTCCATTTTCTCTGGGTCCAAACCGAAATGCATCAGATGTTTCACTATATTTGGATCGATCACAGCGTCGTCCTCCTCATAACTGAAAACGTCGATAGATTCCAAATTCGAAGAAATTGTTCCCAATTTGACAACAAGGGGGAATCGTGTGGCATTGTAGTAGTCTTGCATATGTCCGTTTCCACGAGTCTTCTCTCCATTGGCAAGAAATTGGCTTCGACCGCATCGAATCGCTCCATCGGTCAAATTAAGCCACAGATTCTCAGAGAGTCCACAGTCCTCAACTTCACAATT</canonical>
            <polymorphic>TATTACAAGAAACATCCGCGTTCGTGGTGTAATGGTCAGCATGGATGCCTTCCAAGCATTCGACGGGGGTTCGATTCCCCCCGAACACATTATCTTTTTTTTCTTTCACGGAATGTTACCGAGACAGCTTACTGAGTTTTGATTTTAAATCAAAATCGGTCGAAAATAGGCTTAAATTGACAAAAAAACTGGCTCAAAATTCGCCTAAACTGGACTTAAATAAAACTGAAATTGACCGAAATTCGCTTAAAATTTGTCTAAATACGCCTAATTTGGCTGGAACTCGGTAAAACTGGTCTCGGTCTGGGCTAAATTGGGTGAAAATCAGCATCAACGGGCTTGAAATAGTCCGAAATAGATAAAAATTGGCCTCAGCTGGCCTAAGATTGACCTAAATTGACTAAAATATTCTGAATTTTGCCTAAAATTGATCTAGAATCGGCCTGAAATAGTATAAATTTGAAATCGGTCTAAAATGGCATGAATATGTCTTAAATTTWCCTAAAATGGACCTAGCCTGAATCTTGCCGAAGAAAGAAAAGTTTAGTCTTACCGAGTTCATATAACAACTGCTTCCAGTGTTAATGAGTCCAGTGTAGCCGGGACCGAAGATTGGCTCTAACATCGCTCCATCCTCAGTACAACGTGCCCATTCCCATTTTTCATTCATATCCAACTCCATTTCCAGTGTGCTCTTGGCAGTTTTCTCCATTTTCTCTGGGTCCAAACCGAAATGCATCAGATGTTTCACTATATTTGGATCGATCACAGCGTCGTCCTCCTCATAACTGAAAACGTCGATAGATTCCAAATTCGAAGAAATTGTTCCCAATTTGACAACAAGGGGGAATCGTGTGGCATTGTAGTAGTCTTGCATATGTCCGTTTCCACGAGTCTTCTCTCCATTGGCAAGAAATTGGCTTCGACCGCATCGAATCGCTCCATCGGTCAAATTAAGCCACAGATTCTCAGAGAGTCCACAGTCCTCAACTTCACAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGCTTACTGAGTTTTGATTTT</pcr_primer_p1>
		<pcr_primer_p2>CACTGGAAGCAGTTGTTATATG</pcr_primer_p2>
		<pcr_amplicon_size>458</pcr_amplicon_size>
		<canonical_amplicon>ACAGCTTACTGAGTTTTGATTTTAAATCAAAATCGGTCGAAAATAGGCTTAAATTGACAAAAAAACTGGCTCAAAATTCGCCTAAACTGGACTTAAATAAAACTGAAATTGACCGAAATTCGCTTAAAATTTGTCTAAATACGCCTAATTTGGCTGGAACTCGGTAAAACTGGTCTCGGTCTGGGCTAAATTGGGTGAAAATCAGCATCAACGGGCTTGAAATAGTCCGAAATAGATAAAAATTGGCCTCAGCTGGCCTAAGATTGACCTAAATTGACTAAAATATTCTGAATTTTGCCTAAAATTGATCTAGAATCGGCCTGAAATAGTATAAATTTGAAATCGGTCTAAAATGGCATGAATATGTCTTAAATTTACCTAAAATGGACCTAGCCTGAATCTTGCCGAAGAAAGAAAAGTTTAGTCTTACCGAGTTCATATAACAACTGCTTCCAGTG</canonical_amplicon>
		<polymorphic_amplicon>ACAGCTTACTGAGTTTTGATTTTAAATCAAAATCGGTCGAAAATAGGCTTAAATTGACAAAAAAACTGGCTCAAAATTCGCCTAAACTGGACTTAAATAAAACTGAAATTGACCGAAATTCGCTTAAAATTTGTCTAAATACGCCTAATTTGGCTGGAACTCGGTAAAACTGGTCTCGGTCTGGGCTAAATTGGGTGAAAATCAGCATCAACGGGCTTGAAATAGTCCGAAATAGATAAAAATTGGCCTCAGCTGGCCTAAGATTGACCTAAATTGACTAAAATATTCTGAATTTTGCCTAAAATTGATCTAGAATCGGCCTGAAATAGTATAAATTTGAAATCGGTCTAAAATGGCATGAATATGTCTTAAATTTWCCTAAAATGGACCTAGCCTGAATCTTGCCGAAGAAAGAAAAGTTTAGTCTTACCGAGTTCATATAACAACTGCTTCCAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28520</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>111038</contig_pos>
        <strand></strand>
        <context>CGAAGAAAGA[A/G]AAGTTTAGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCTTAAATTTACCTAAAATGGACCTAGCCTGAATCTTGCCGAAGAAAGA</left_flank>
        <right_flank>AAGTTTAGTCTTACCGAGTTCATATAACAACTGCTTCCAGTGTTAATGAG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGGATGCCTTCCAAGCATTCGACGGGGGTTCGATTCCCCCCGAACACATTATCTTTTTTTTCTTTCACGGAATGTTACCGAGACAGCTTACTGAGTTTTGATTTTAAATCAAAATCGGTCGAAAATAGGCTTAAATTGACAAAAAAACTGGCTCAAAATTCGCCTAAACTGGACTTAAATAAAACTGAAATTGACCGAAATTCGCTTAAAATTTGTCTAAATACGCCTAATTTGGCTGGAACTCGGTAAAACTGGTCTCGGTCTGGGCTAAATTGGGTGAAAATCAGCATCAACGGGCTTGAAATAGTCCGAAATAGATAAAAATTGGCCTCAGCTGGCCTAAGATTGACCTAAATTGACTAAAATATTCTGAATTTTGCCTAAAATTGATCTAGAATCGGCCTGAAATAGTATAAATTTGAAATCGGTCTAAAATGGCATGAATATGTCTTAAATTTACCTAAAATGGACCTAGCCTGAATCTTGCCGAAGAAAGAAAAGTTTAGTCTTACCGAGTTCATATAACAACTGCTTCCAGTGTTAATGAGTCCAGTGTAGCCGGGACCGAAGATTGGCTCTAACATCGCTCCATCCTCAGTACAACGTGCCCATTCCCATTTTTCATTCATATCCAACTCCATTTCCAGTGTGCTCTTGGCAGTTTTCTCCATTTTCTCTGGGTCCAAACCGAAATGCATCAGATGTTTCACTATATTTGGATCGATCACAGCGTCGTCCTCCTCATAACTGAAAACGTCGATAGATTCCAAATTCGAAGAAATTGTTCCCAATTTGACAACAAGGGGGAATCGTGTGGCATTGTAGTAGTCTTGCATATGTCCGTTTCCACGAGTCTTCTCTCCATTGGCAAGAAATTGGCTTCGACCGCATCGAATCGCTCCATCGGTCAAATTAAGCCACAGATTCTCAGAGAGTCCACAGTCCTCAACTTCACAATTCCATCCAGATAAGGCTAGAACCTTTCCCTCGTCACTCTG</canonical>
            <polymorphic>CATGGATGCCTTCCAAGCATTCGACGGGGGTTCGATTCCCCCCGAACACATTATCTTTTTTTTCTTTCACGGAATGTTACCGAGACAGCTTACTGAGTTTTGATTTTAAATCAAAATCGGTCGAAAATAGGCTTAAATTGACAAAAAAACTGGCTCAAAATTCGCCTAAACTGGACTTAAATAAAACTGAAATTGACCGAAATTCGCTTAAAATTTGTCTAAATACGCCTAATTTGGCTGGAACTCGGTAAAACTGGTCTCGGTCTGGGCTAAATTGGGTGAAAATCAGCATCAACGGGCTTGAAATAGTCCGAAATAGATAAAAATTGGCCTCAGCTGGCCTAAGATTGACCTAAATTGACTAAAATATTCTGAATTTTGCCTAAAATTGATCTAGAATCGGCCTGAAATAGTATAAATTTGAAATCGGTCTAAAATGGCATGAATATGTCTTAAATTTACCTAAAATGGACCTAGCCTGAATCTTGCCGAAGAAAGARAAGTTTAGTCTTACCGAGTTCATATAACAACTGCTTCCAGTGTTAATGAGTCCAGTGTAGCCGGGACCGAAGATTGGCTCTAACATCGCTCCATCCTCAGTACAACGTGCCCATTCCCATTTTTCATTCATATCCAACTCCATTTCCAGTGTGCTCTTGGCAGTTTTCTCCATTTTCTCTGGGTCCAAACCGAAATGCATCAGATGTTTCACTATATTTGGATCGATCACAGCGTCGTCCTCCTCATAACTGAAAACGTCGATAGATTCCAAATTCGAAGAAATTGTTCCCAATTTGACAACAAGGGGGAATCGTGTGGCATTGTAGTAGTCTTGCATATGTCCGTTTCCACGAGTCTTCTCTCCATTGGCAAGAAATTGGCTTCGACCGCATCGAATCGCTCCATCGGTCAAATTAAGCCACAGATTCTCAGAGAGTCCACAGTCCTCAACTTCACAATTCCATCCAGATAAGGCTAGAACCTTTCCCTCGTCACTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGCTTACTGAGTTTTGATTTT</pcr_primer_p1>
		<pcr_primer_p2>GCTACACTGGACTCATTAACACT</pcr_primer_p2>
		<pcr_amplicon_size>477</pcr_amplicon_size>
		<canonical_amplicon>ACAGCTTACTGAGTTTTGATTTTAAATCAAAATCGGTCGAAAATAGGCTTAAATTGACAAAAAAACTGGCTCAAAATTCGCCTAAACTGGACTTAAATAAAACTGAAATTGACCGAAATTCGCTTAAAATTTGTCTAAATACGCCTAATTTGGCTGGAACTCGGTAAAACTGGTCTCGGTCTGGGCTAAATTGGGTGAAAATCAGCATCAACGGGCTTGAAATAGTCCGAAATAGATAAAAATTGGCCTCAGCTGGCCTAAGATTGACCTAAATTGACTAAAATATTCTGAATTTTGCCTAAAATTGATCTAGAATCGGCCTGAAATAGTATAAATTTGAAATCGGTCTAAAATGGCATGAATATGTCTTAAATTTACCTAAAATGGACCTAGCCTGAATCTTGCCGAAGAAAGAAAAGTTTAGTCTTACCGAGTTCATATAACAACTGCTTCCAGTGTTAATGAGTCCAGTGTAGC</canonical_amplicon>
		<polymorphic_amplicon>ACAGCTTACTGAGTTTTGATTTTAAATCAAAATCGGTCGAAAATAGGCTTAAATTGACAAAAAAACTGGCTCAAAATTCGCCTAAACTGGACTTAAATAAAACTGAAATTGACCGAAATTCGCTTAAAATTTGTCTAAATACGCCTAATTTGGCTGGAACTCGGTAAAACTGGTCTCGGTCTGGGCTAAATTGGGTGAAAATCAGCATCAACGGGCTTGAAATAGTCCGAAATAGATAAAAATTGGCCTCAGCTGGCCTAAGATTGACCTAAATTGACTAAAATATTCTGAATTTTGCCTAAAATTGATCTAGAATCGGCCTGAAATAGTATAAATTTGAAATCGGTCTAAAATGGCATGAATATGTCTTAAATTTACCTAAAATGGACCTAGCCTGAATCTTGCCGAAGAAAGARAAGTTTAGTCTTACCGAGTTCATATAACAACTGCTTCCAGTGTTAATGAGTCCAGTGTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28521</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>122558</contig_pos>
        <strand>+</strand>
        <context>TAGAATACAA[G/T]TTTAATTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAA</left_flank>
        <right_flank>TTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAA</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACGAATTCTGCACCTTTACAATTTTCAAAAAACAACAGAAAACAATAGTGTCAAAAAACAAAACTGATACACTATGTTTACAGTACCGAATCAAAGACCATTTCTCTCTTTTTTTCGCAGCAAACAACATTGTAAAAAAGGAAACTAAATACTACAAGCGAGATAGATAAGAACAGGTGGTGGTCAACGGAATCAAAGAAAACAGTCACGTGGCGATGCGGAGAACAAGATGTTAGGTCAGGAATCAGTGACTTTTGGAAAAAATAATACTTCGGGGAGGTTTTTTGGGAAGAAATGTATTCTTGACCAGAGTCCTTTTATAATGGGAAAATAACTGGTTTTTGAAAGGGAATAAAGTTCTTTAAAAGTTCAGTTAACGTTATTCCAAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTCTACAATTTTTGCGAATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAAGTTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGA</canonical>
            <polymorphic>TGACGAATTCTGCACCTTTACAATTTTCAAAAAACAACAGAAAACAATAGTGTCAAAAAACAAAACTGATACACTATGTTTACAGTACCGAATCAAAGACCATTTCTCTCTTTTTTTCGCAGCAAACAACATTGTAAAAAAGGAAACTAAATACTACAAGCGAGATAGATAAGAACAGGTGGTGGTCAACGGAATCAAAGAAAACAGTCACGTGGCGATGCGGAGAACAAGATGTTAGGTCAGGAATCAGTGACTTTTGGAAAAAATAATACTTCGGGGAGGTTTTTTGGGAAGAAATGTATTCTTGACCAGAGTCCTTTTATAATGGGAAAATAACTGGTTTTTGAAAGGGAATAAAGTTCTTTAAAAGTTCAGTTAACGTTATTCCAAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAAKTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTCTACAATTTTTGCGAATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAAGTTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>386 100 51 50 47 46 45 40 32 31 30 30 26 16 13 12 11 7 7 6 5 5 4</canonical_bands>
                <polymorphic_bands>386 100 53 51 50 46 45 40 32 31 30 30 26 16 13 12 11 7 7 5 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTACTCCAGAATCGGCTAAT</pcr_primer_p1>
		<pcr_primer_p2>CATTCCAATAAAACATAATGTCA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATG</canonical_amplicon>
		<polymorphic_amplicon>AAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAAKTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28522</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>122571</contig_pos>
        <strand>+</strand>
        <context>TAATTCAATT[G/T]TTTGGTTCAW</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATT</left_flank>
        <right_flank>TTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTTTACAATTTTCAAAAAACAACAGAAAACAATAGTGTCAAAAAACAAAACTGATACACTATGTTTACAGTACCGAATCAAAGACCATTTCTCTCTTTTTTTCGCAGCAAACAACATTGTAAAAAAGGAAACTAAATACTACAAGCGAGATAGATAAGAACAGGTGGTGGTCAACGGAATCAAAGAAAACAGTCACGTGGCGATGCGGAGAACAAGATGTTAGGTCAGGAATCAGTGACTTTTGGAAAAAATAATACTTCGGGGAGGTTTTTTGGGAAGAAATGTATTCTTGACCAGAGTCCTTTTATAATGGGAAAATAACTGGTTTTTGAAAGGGAATAAAGTTCTTTAAAAGTTCAGTTAACGTTATTCCAAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTCTACAATTTTTGCGAATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAAGTTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTTCGGAATC</canonical>
            <polymorphic>ACCTTTACAATTTTCAAAAAACAACAGAAAACAATAGTGTCAAAAAACAAAACTGATACACTATGTTTACAGTACCGAATCAAAGACCATTTCTCTCTTTTTTTCGCAGCAAACAACATTGTAAAAAAGGAAACTAAATACTACAAGCGAGATAGATAAGAACAGGTGGTGGTCAACGGAATCAAAGAAAACAGTCACGTGGCGATGCGGAGAACAAGATGTTAGGTCAGGAATCAGTGACTTTTGGAAAAAATAATACTTCGGGGAGGTTTTTTGGGAAGAAATGTATTCTTGACCAGAGTCCTTTTATAATGGGAAAATAACTGGTTTTTGAAAGGGAATAAAGTTCTTTAAAAGTTCAGTTAACGTTATTCCAAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTKTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTCTACAATTTTTGCGAATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAAGTTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTTCGGAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTACTCCAGAATCGGCTAAT</pcr_primer_p1>
		<pcr_primer_p2>CATTCCAATAAAACATAATGTCA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATG</canonical_amplicon>
		<polymorphic_amplicon>AAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTKTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28523</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>122616</contig_pos>
        <strand>+</strand>
        <context>AAATTAATTA[C/T]TCATTTTGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTA</left_flank>
        <right_flank>TCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTT</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAAAACTGATACACTATGTTTACAGTACCGAATCAAAGACCATTTCTCTCTTTTTTTCGCAGCAAACAACATTGTAAAAAAGGAAACTAAATACTACAAGCGAGATAGATAAGAACAGGTGGTGGTCAACGGAATCAAAGAAAACAGTCACGTGGCGATGCGGAGAACAAGATGTTAGGTCAGGAATCAGTGACTTTTGGAAAAAATAATACTTCGGGGAGGTTTTTTGGGAAGAAATGTATTCTTGACCAGAGTCCTTTTATAATGGGAAAATAACTGGTTTTTGAAAGGGAATAAAGTTCTTTAAAAGTTCAGTTAACGTTATTCCAAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTCTACAATTTTTGCGAATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAAGTTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTTCGGAATCGCTGACTTTTTTGATTCGAGATTTTGCAATTTTTCTGGGTGTTTT</canonical>
            <polymorphic>AACAAAACTGATACACTATGTTTACAGTACCGAATCAAAGACCATTTCTCTCTTTTTTTCGCAGCAAACAACATTGTAAAAAAGGAAACTAAATACTACAAGCGAGATAGATAAGAACAGGTGGTGGTCAACGGAATCAAAGAAAACAGTCACGTGGCGATGCGGAGAACAAGATGTTAGGTCAGGAATCAGTGACTTTTGGAAAAAATAATACTTCGGGGAGGTTTTTTGGGAAGAAATGTATTCTTGACCAGAGTCCTTTTATAATGGGAAAATAACTGGTTTTTGAAAGGGAATAAAGTTCTTTAAAAGTTCAGTTAACGTTATTCCAAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTAYTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTCTACAATTTTTGCGAATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAAGTTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTTCGGAATCGCTGACTTTTTTGATTCGAGATTTTGCAATTTTTCTGGGTGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTACTCCAGAATCGGCTAAT</pcr_primer_p1>
		<pcr_primer_p2>CATTCCAATAAAACATAATGTCA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATG</canonical_amplicon>
		<polymorphic_amplicon>AAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTAYTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28524</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>122637</contig_pos>
        <strand>+</strand>
        <context>GATGGAGTCC[C/T]TGACTACACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCC</left_flank>
        <right_flank>TGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTACAGTACCGAATCAAAGACCATTTCTCTCTTTTTTTCGCAGCAAACAACATTGTAAAAAAGGAAACTAAATACTACAAGCGAGATAGATAAGAACAGGTGGTGGTCAACGGAATCAAAGAAAACAGTCACGTGGCGATGCGGAGAACAAGATGTTAGGTCAGGAATCAGTGACTTTTGGAAAAAATAATACTTCGGGGAGGTTTTTTGGGAAGAAATGTATTCTTGACCAGAGTCCTTTTATAATGGGAAAATAACTGGTTTTTGAAAGGGAATAAAGTTCTTTAAAAGTTCAGTTAACGTTATTCCAAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTCTACAATTTTTGCGAATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAAGTTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTTCGGAATCGCTGACTTTTTTGATTCGAGATTTTGCAATTTTTCTGGGTGTTTTTTTTAATGTGAATCACATTTT</canonical>
            <polymorphic>TTACAGTACCGAATCAAAGACCATTTCTCTCTTTTTTTCGCAGCAAACAACATTGTAAAAAAGGAAACTAAATACTACAAGCGAGATAGATAAGAACAGGTGGTGGTCAACGGAATCAAAGAAAACAGTCACGTGGCGATGCGGAGAACAAGATGTTAGGTCAGGAATCAGTGACTTTTGGAAAAAATAATACTTCGGGGAGGTTTTTTGGGAAGAAATGTATTCTTGACCAGAGTCCTTTTATAATGGGAAAATAACTGGTTTTTGAAAGGGAATAAAGTTCTTTAAAAGTTCAGTTAACGTTATTCCAAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCYTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTCTACAATTTTTGCGAATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAAGTTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTTCGGAATCGCTGACTTTTTTGATTCGAGATTTTGCAATTTTTCTGGGTGTTTTTTTTAATGTGAATCACATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTACTCCAGAATCGGCTAAT</pcr_primer_p1>
		<pcr_primer_p2>CATTCCAATAAAACATAATGTCA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATG</canonical_amplicon>
		<polymorphic_amplicon>AAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCYTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28525</snp_id>
        <super_contig>c003900701.Contig4</super_contig>
        <contig_pos>122669</contig_pos>
        <strand></strand>
        <context>ACTAATTTGA[T/C]CTGRATGACA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGA</left_flank>
        <right_flank>CTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTT</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTCGCAGCAAACAACATTGTAAAAAAGGAAACTAAATACTACAAGCGAGATAGATAAGAACAGGTGGTGGTCAACGGAATCAAAGAAAACAGTCACGTGGCGATGCGGAGAACAAGATGTTAGGTCAGGAATCAGTGACTTTTGGAAAAAATAATACTTCGGGGAGGTTTTTTGGGAAGAAATGTATTCTTGACCAGAGTCCTTTTATAATGGGAAAATAACTGGTTTTTGAAAGGGAATAAAGTTCTTTAAAAGTTCAGTTAACGTTATTCCAAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTCTACAATTTTTGCGAATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAAGTTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTTCGGAATCGCTGACTTTTTTGATTCGAGATTTTGCAATTTTTCTGGGTGTTTTTTTTAATGTGAATCACATTTTTTAAAATAAACATCTCGTGTAAAATACTTTTC</canonical>
            <polymorphic>TTTTTTCGCAGCAAACAACATTGTAAAAAAGGAAACTAAATACTACAAGCGAGATAGATAAGAACAGGTGGTGGTCAACGGAATCAAAGAAAACAGTCACGTGGCGATGCGGAGAACAAGATGTTAGGTCAGGAATCAGTGACTTTTGGAAAAAATAATACTTCGGGGAGGTTTTTTGGGAAGAAATGTATTCTTGACCAGAGTCCTTTTATAATGGGAAAATAACTGGTTTTTGAAAGGGAATAAAGTTCTTTAAAAGTTCAGTTAACGTTATTCCAAGTACTCCAGAATCGGCTAATTAGACTGCAAATAGAAAAATCCTTTCCTAATTCGTTGTGAAATTTCCTGTCACAAAAACGTGCGATTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGAYCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTCTACAATTTTTGCGAATGCTTTATTTTTAAAATTTAATGTGAATCACATTTTGATGTGATAAAAGTTTTGTATGAAATTACTTTTCGGTTTCAAGGAGTAGATAGAATTTATAGAATACTCGAAATATTATTGGGTTATTTGTTTTCAATGTCTTTGAAATCTTGTTTCCAAAATAATGACCTGAAACAAAGTTTGTTTGATTTGAATTTTCAATGAAAATTTGAAATTTCGCTGGAATTCAAAAAAGAAATGCTGGAACATTCGGGAGTTTTTCGGAATCGCTGACTTTTTTGATTCGAGATTTTGCAATTTTTCTGGGTGTTTTTTTTAATGTGAATCACATTTTTTAAAATAAACATCTCGTGTAAAATACTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>503 368 129</canonical_bands>
                <polymorphic_bands>632 368</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>502 305 103 90</canonical_bands>
                <polymorphic_bands>592 305 103</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGGATCAAGTCATAGAATACAA</pcr_primer_p1>
		<pcr_primer_p2>GAACTTCCAATCCACAAAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>TTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGATCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTGGATCAAGTCATAGAATACAATTTTAATTCAATTTTTTGGTTCATTGAGTTTTTCATTTCAGGGAAATGAAATTAATTATTCATTTTGAGGATGGAGTCCCTGACTACACTTGTTGGTTGTGACTAATTTGAYCTGAATGACATTATGTTTTATTGGAATGAAAAATATGGAATTTTCAATTTCTGGCGGGGTTAAAAAAAAGAAGGAACATTCTAGAAGTTTCCGAAAATTGCTACTTTGTGGATTGGAAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28526</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>8969</contig_pos>
        <strand>+</strand>
        <context>GAAAATTTTG[G/T]AAAAAAWWTT</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAGGACAATTCAAGTAGGTGGCTTTTTTGGCGCGAAATTTGAAAATTTTG</left_flank>
        <right_flank>AAAAAATTTTGTTTCAGATTTCTAAAAATCTTAAAATTTTAAGAACTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCGGGAAAGATAGCTGAAAATTGCTAATTATTACATTGTTCAAAATAAATTTTCACACATTTTGATGTTTTTCGTTTTTTCATAGCTATTGTAGTTTTGGAGATATGCGCCTTTAAAGAAGCCCCCATTCTCGGTAGGGGAGATTGTCTGCGTTTCTTTAAACTTGTATATCTCAAAAACTACGGTACCTACTACAAAGTTGTCAACTACAAATATGTGTAAAATTTTATGCTGAGTAATTTTGTAGTTGACAACTTCTTCCTAGCTATTGTACTTTTTGAGTTACGCGTCTTTAAAAATGACTCATCTTTCAGAACTACTCGGACTGCGAGAAGAAGCACTTCCTGGATGTGGCCTACGAGAACAATTGGGGGACTACGGTAGCAGCGAACAAATTCAATCGTGTCTGGGGAAAAGGACCAACAAGACGCATGTTTTATTGGTGGAGAGGACAATTCAAGTAGGTGGCTTTTTTGGCGCGAAATTTGAAAATTTTGAAAAAAATTTTGTTTCAGATTTCTAAAAATCTTAAAATTTTAAGAACTCAAATTTTTTTCAGAAAAGAGCACGACCGTGACCAAATCGTTCTGGAGAGTTTGTACACTAAGAAAAGAGAGGGATCCAAGAAATTGGCGGATTACTGTAGAAATCCAGAGGGTCTGGCAGATGAGAAAACTGCAAAAGACGCTCAACAATGTCTGAAGGATCTGGAAGCGAATGATAAGGAAATCGAGAGTCTTATCAATAAAAAGTGAGCAATTTTTTCTGGAAAAATCTGGAATTAAAAAAAATGTTTTTTTGAAAAAACATTTTTTCTTTAAATTTCTAGACGTTTTCCAGATTTTTTTTGAAGATTGCTCAGCTTAAAAAAACTCGAAATATTCTAGAAAACTCATGGCTTGCTCGATAACCGGCGAAAAATGCGCGCACGGAAACGGAATTCAAGAGGATACGGTGGCCCGAAAATTCACGACCCCATTCGTATGTGCTCACTGTGA</canonical>
            <polymorphic>AACCGGGAAAGATAGCTGAAAATTGCTAATTATTACATTGTTCAAAATAAATTTTCACACATTTTGATGTTTTTCGTTTTTTCATAGCTATTGTAGTTTTGGAGATATGCGCCTTTAAAGAAGCCCCCATTCTCGGTAGGGGAGATTGTCTGCGTTTCTTTAAACTTGTATATCTCAAAAACTACGGTACCTACTACAAAGTTGTCAACTACAAATATGTGTAAAATTTTATGCTGAGTAATTTTGTAGTTGACAACTTCTTCCTAGCTATTGTACTTTTTGAGTTACGCGTCTTTAAAAATGACTCATCTTTCAGAACTACTCGGACTGCGAGAAGAAGCACTTCCTGGATGTGGCCTACGAGAACAATTGGGGGACTACGGTAGCAGCGAACAAATTCAATCGTGTCTGGGGAAAAGGACCAACAAGACGCATGTTTTATTGGTGGAGAGGACAATTCAAGTAGGTGGCTTTTTTGGCGCGAAATTTGAAAATTTTGKAAAAAATTTTGTTTCAGATTTCTAAAAATCTTAAAATTTTAAGAACTCAAATTTTTTTCAGAAAAGAGCACGACCGTGACCAAATCGTTCTGGAGAGTTTGTACACTAAGAAAAGAGAGGGATCCAAGAAATTGGCGGATTACTGTAGAAATCCAGAGGGTCTGGCAGATGAGAAAACTGCAAAAGACGCTCAACAATGTCTGAAGGATCTGGAAGCGAATGATAAGGAAATCGAGAGTCTTATCAATAAAAAGTGAGCAATTTTTTCTGGAAAAATCTGGAATTAAAAAAAATGTTTTTTTGAAAAAACATTTTTTCTTTAAATTTCTAGACGTTTTCCAGATTTTTTTTGAAGATTGCTCAGCTTAAAAAAACTCGAAATATTCTAGAAAACTCATGGCTTGCTCGATAACCGGCGAAAAATGCGCGCACGGAAACGGAATTCAAGAGGATACGGTGGCCCGAAAATTCACGACCCCATTCGTATGTGCTCACTGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAACAATTGGGGGACTAC</pcr_primer_p1>
		<pcr_primer_p2>TCTTAGTGTACAAACTCTCCAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGAACAATTGGGGGACTACGGTAGCAGCGAACAAATTCAATCGTGTCTGGGGAAAAGGACCAACAAGACGCATGTTTTATTGGTGGAGAGGACAATTCAAGTAGGTGGCTTTTTTGGCGCGAAATTTGAAAATTTTGAAAAAAATTTTGTTTCAGATTTCTAAAAATCTTAAAATTTTAAGAACTCAAATTTTTTTCAGAAAAGAGCACGACCGTGACCAAATCGTTCTGGAGAGTTTGTACACTAAGA</canonical_amplicon>
		<polymorphic_amplicon>GAGAACAATTGGGGGACTACGGTAGCAGCGAACAAATTCAATCGTGTCTGGGGAAAAGGACCAACAAGACGCATGTTTTATTGGTGGAGAGGACAATTCAAGTAGGTGGCTTTTTTGGCGCGAAATTTGAAAATTTTGKAAAAAATTTTGTTTCAGATTTCTAAAAATCTTAAAATTTTAAGAACTCAAATTTTTTTCAGAAAAGAGCACGACCGTGACCAAATCGTTCTGGAGAGTTTGTACACTAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28527</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>9205</contig_pos>
        <strand>+</strand>
        <context>AGGAAATCGA[A/T]AGTCTTATCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACGCTCAACAATGTCTGAAGGATCTGGAAGCGAATGATAAGGAAATCGA</left_flank>
        <right_flank>AGTCTTATCAATAAAAAGTGAGCAATTTTTTCTGGAAAAATCTGGAATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTAATTTTGTAGTTGACAACTTCTTCCTAGCTATTGTACTTTTTGAGTTACGCGTCTTTAAAAATGACTCATCTTTCAGAACTACTCGGACTGCGAGAAGAAGCACTTCCTGGATGTGGCCTACGAGAACAATTGGGGGACTACGGTAGCAGCGAACAAATTCAATCGTGTCTGGGGAAAAGGACCAACAAGACGCATGTTTTATTGGTGGAGAGGACAATTCAAGTAGGTGGCTTTTTTGGCGCGAAATTTGAAAATTTTGAAAAAAATTTTGTTTCAGATTTCTAAAAATCTTAAAATTTTAAGAACTCAAATTTTTTTCAGAAAAGAGCACGACCGTGACCAAATCGTTCTGGAGAGTTTGTACACTAAGAAAAGAGAGGGATCCAAGAAATTGGCGGATTACTGTAGAAATCCAGAGGGTCTGGCAGATGAGAAAACTGCAAAAGACGCTCAACAATGTCTGAAGGATCTGGAAGCGAATGATAAGGAAATCGAGAGTCTTATCAATAAAAAGTGAGCAATTTTTTCTGGAAAAATCTGGAATTAAAAAAAATGTTTTTTTGAAAAAACATTTTTTCTTTAAATTTCTAGACGTTTTCCAGATTTTTTTTGAAGATTGCTCAGCTTAAAAAAACTCGAAATATTCTAGAAAACTCATGGCTTGCTCGATAACCGGCGAAAAATGCGCGCACGGAAACGGAATTCAAGAGGATACGGTGGCCCGAAAATTCACGACCCCATTCGTATGTGCTCACTGTGAAATGCCGTTTCAGAAGGTGAGAAGTTTAGTGGGAAATCTAGAAAATCGAATTTTCCTGGAAAAATGCTTCAAAACGAGCCCAAACACGACTGTATTCGGTTGACTTTAAAATTTCAGAAAATCTCGGATTACTGTAGTTTTTGTTGTGACAGTCTGTTCTGAAAAATTTTAATGAACTTGAATAGAGCTCAGTGAGAGCTTCAAAATGAGCCCAAACACGACTAGGCTCCGCCCAT</canonical>
            <polymorphic>AGTAATTTTGTAGTTGACAACTTCTTCCTAGCTATTGTACTTTTTGAGTTACGCGTCTTTAAAAATGACTCATCTTTCAGAACTACTCGGACTGCGAGAAGAAGCACTTCCTGGATGTGGCCTACGAGAACAATTGGGGGACTACGGTAGCAGCGAACAAATTCAATCGTGTCTGGGGAAAAGGACCAACAAGACGCATGTTTTATTGGTGGAGAGGACAATTCAAGTAGGTGGCTTTTTTGGCGCGAAATTTGAAAATTTTGAAAAAAATTTTGTTTCAGATTTCTAAAAATCTTAAAATTTTAAGAACTCAAATTTTTTTCAGAAAAGAGCACGACCGTGACCAAATCGTTCTGGAGAGTTTGTACACTAAGAAAAGAGAGGGATCCAAGAAATTGGCGGATTACTGTAGAAATCCAGAGGGTCTGGCAGATGAGAAAACTGCAAAAGACGCTCAACAATGTCTGAAGGATCTGGAAGCGAATGATAAGGAAATCGAWAGTCTTATCAATAAAAAGTGAGCAATTTTTTCTGGAAAAATCTGGAATTAAAAAAAATGTTTTTTTGAAAAAACATTTTTTCTTTAAATTTCTAGACGTTTTCCAGATTTTTTTTGAAGATTGCTCAGCTTAAAAAAACTCGAAATATTCTAGAAAACTCATGGCTTGCTCGATAACCGGCGAAAAATGCGCGCACGGAAACGGAATTCAAGAGGATACGGTGGCCCGAAAATTCACGACCCCATTCGTATGTGCTCACTGTGAAATGCCGTTTCAGAAGGTGAGAAGTTTAGTGGGAAATCTAGAAAATCGAATTTTCCTGGAAAAATGCTTCAAAACGAGCCCAAACACGACTGTATTCGGTTGACTTTAAAATTTCAGAAAATCTCGGATTACTGTAGTTTTTGTTGTGACAGTCTGTTCTGAAAAATTTTAATGAACTTGAATAGAGCTCAGTGAGAGCTTCAAAATGAGCCCAAACACGACTAGGCTCCGCCCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>500 433 67</canonical_bands>
                <polymorphic_bands>933 67</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>354 198 67 63 59 57 50 47 35 26 23 11 10</canonical_bands>
                <polymorphic_bands>354 198 67 63 59 58 57 50 47 26 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGGAGAGTTTGTACACTAAGAA</pcr_primer_p1>
		<pcr_primer_p2>AAAACGTCTAGAAATTTAAAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTGGAGAGTTTGTACACTAAGAAAAGAGAGGGATCCAAGAAATTGGCGGATTACTGTAGAAATCCAGAGGGTCTGGCAGATGAGAAAACTGCAAAAGACGCTCAACAATGTCTGAAGGATCTGGAAGCGAATGATAAGGAAATCGAGAGTCTTATCAATAAAAAGTGAGCAATTTTTTCTGGAAAAATCTGGAATTAAAAAAAATGTTTTTTTGAAAAAACATTTTTTCTTTAAATTTCTAGACGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TCTGGAGAGTTTGTACACTAAGAAAAGAGAGGGATCCAAGAAATTGGCGGATTACTGTAGAAATCCAGAGGGTCTGGCAGATGAGAAAACTGCAAAAGACGCTCAACAATGTCTGAAGGATCTGGAAGCGAATGATAAGGAAATCGAWAGTCTTATCAATAAAAAGTGAGCAATTTTTTCTGGAAAAATCTGGAATTAAAAAAAATGTTTTTTTGAAAAAACATTTTTTCTTTAAATTTCTAGACGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28528</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>19931</contig_pos>
        <strand></strand>
        <context>catcatcatc[A/T]tcttcttctt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCAGAAATTGTTTTTCTATATCAAAATCCTGGTCATCATCATCATCATC</left_flank>
        <right_flank>TCTTCTTCTTCTTCTTCCTGTTCTTCATTACGTTCAAATTCAAAACCTCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATATAGATCTTAAAAAGGGCTACAAAATAAATTACAATTTCATATAATTCTGTAAAAAGCTCGGCCAGCTGGGAAGCATGTAAGAAGCTAGCTTGTATTACAATTCTTATGTTCAACATTTTTCAATGCTTCCTGCTGATTATAATTTTTGTTTGAATGTTGACGGATTATATATCATTTTGTAGCTCTTCTCAAAATCTACAGTTCACTGTTTTGAGATTTTCAAAATGTTGAGTTTGAAAGAAGTTACAGTCCAAAATGTAATGGAGCCAGGTGTAAGCTACCGCTATGCATCAGAATTTACCCTGTAACTTCCTTCAAACCCAACATTTTTGAAAAATTCAAAAAGTGAAATGTAGCATTTGAAAAGCGTTACCTGCCTACTATTAAAGAAAATCAATTAGATTCAGTTTTTCCTCTATTTCTTTCTGTTTTTTCCTCCTATTAATCAGAAATTGTTTTTCTATATCAAAATCCTGGTCATCATCATCATCATCATCTTCTTCTTCTTCTTCCTGTTCTTCATTACGTTCAAATTCAAAACCTCTGGCCCAAGCCCTCAATCTCAATCGTGGGCAGCACATTTGAATGAATATAAACAGTATTAAGCAGATGAAAAACATAACAACGCAAAATGAGAAGGTATTCAAAATTGTTTCGAGTGTGATGAGACCGAAGAACATTCTGGAAAATTTCCTATAAGAAGCTCCATAAAGTGGCTTTCTACGACTAGTTTAAGCAAAGTTAGGGTCAAAACTAGTTTAAAAGAACGGTTTTTGAATTTTTGGCCTTAATTTTGATTCAATCAAAAATTTAATATTGAATTTAAATTCAGCAAAGTGAGAGCTTCGAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTCATTTTGGAGGCGCGTCGCGGTCGTGCGTCGCGTGCCGACGAGAAATTTTAAAGTGGCCGTTTAGGCTCATTATGAAGCTAACAAGGAGACCTTTGCACTAGCTACGATTT</canonical>
            <polymorphic>AAATATAGATCTTAAAAAGGGCTACAAAATAAATTACAATTTCATATAATTCTGTAAAAAGCTCGGCCAGCTGGGAAGCATGTAAGAAGCTAGCTTGTATTACAATTCTTATGTTCAACATTTTTCAATGCTTCCTGCTGATTATAATTTTTGTTTGAATGTTGACGGATTATATATCATTTTGTAGCTCTTCTCAAAATCTACAGTTCACTGTTTTGAGATTTTCAAAATGTTGAGTTTGAAAGAAGTTACAGTCCAAAATGTAATGGAGCCAGGTGTAAGCTACCGCTATGCATCAGAATTTACCCTGTAACTTCCTTCAAACCCAACATTTTTGAAAAATTCAAAAAGTGAAATGTAGCATTTGAAAAGCGTTACCTGCCTACTATTAAAGAAAATCAATTAGATTCAGTTTTTCCTCTATTTCTTTCTGTTTTTTCCTCCTATTAATCAGAAATTGTTTTTCTATATCAAAATCCTGGTCATCATCATCATCATCWTCTTCTTCTTCTTCTTCCTGTTCTTCATTACGTTCAAATTCAAAACCTCTGGCCCAAGCCCTCAATCTCAATCGTGGGCAGCACATTTGAATGAATATAAACAGTATTAAGCAGATGAAAAACATAACAACGCAAAATGAGAAGGTATTCAAAATTGTTTCGAGTGTGATGAGACCGAAGAACATTCTGGAAAATTTCCTATAAGAAGCTCCATAAAGTGGCTTTCTACGACTAGTTTAAGCAAAGTTAGGGTCAAAACTAGTTTAAAAGAACGGTTTTTGAATTTTTGGCCTTAATTTTGATTCAATCAAAAATTTAATATTGAATTTAAATTCAGCAAAGTGAGAGCTTCGAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTCATTTTGGAGGCGCGTCGCGGTCGTGCGTCGCGTGCCGACGAGAAATTTTAAAGTGGCCGTTTAGGCTCATTATGAAGCTAACAAGGAGACCTTTGCACTAGCTACGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAGTTTTTCCTCTATTTCTTTC</pcr_primer_p1>
		<pcr_primer_p2>CAATTTTGAATACCTTCTCATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCAGTTTTTCCTCTATTTCTTTCTGTTTTTTCCTCCTATTAATCAGAAATTGTTTTTCTATATCAAAATCCTGGTCATCATCATCATCATCATCTTCTTCTTCTTCTTCCTGTTCTTCATTACGTTCAAATTCAAAACCTCTGGCCCAAGCCCTCAATCTCAATCGTGGGCAGCACATTTGAATGAATATAAACAGTATTAAGCAGATGAAAAACATAACAACGCAAAATGAGAAGGTATTCAAAATTG</canonical_amplicon>
		<polymorphic_amplicon>TTCAGTTTTTCCTCTATTTCTTTCTGTTTTTTCCTCCTATTAATCAGAAATTGTTTTTCTATATCAAAATCCTGGTCATCATCATCATCATCWTCTTCTTCTTCTTCTTCCTGTTCTTCATTACGTTCAAATTCAAAACCTCTGGCCCAAGCCCTCAATCTCAATCGTGGGCAGCACATTTGAATGAATATAAACAGTATTAAGCAGATGAAAAACATAACAACGCAAAATGAGAAGGTATTCAAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28529</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>19955</contig_pos>
        <strand></strand>
        <context>cttcctgttc[T/A]tcATTACGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAATCCTGGTCATCATCATCATCATCATCTTCTTCTTCTTCTTCCTGTTC</left_flank>
        <right_flank>TCATTACGTTCAAATTCAAAACCTCTGGCCCAAGCCCTCAATCTCAATCG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAATAAATTACAATTTCATATAATTCTGTAAAAAGCTCGGCCAGCTGGGAAGCATGTAAGAAGCTAGCTTGTATTACAATTCTTATGTTCAACATTTTTCAATGCTTCCTGCTGATTATAATTTTTGTTTGAATGTTGACGGATTATATATCATTTTGTAGCTCTTCTCAAAATCTACAGTTCACTGTTTTGAGATTTTCAAAATGTTGAGTTTGAAAGAAGTTACAGTCCAAAATGTAATGGAGCCAGGTGTAAGCTACCGCTATGCATCAGAATTTACCCTGTAACTTCCTTCAAACCCAACATTTTTGAAAAATTCAAAAAGTGAAATGTAGCATTTGAAAAGCGTTACCTGCCTACTATTAAAGAAAATCAATTAGATTCAGTTTTTCCTCTATTTCTTTCTGTTTTTTCCTCCTATTAATCAGAAATTGTTTTTCTATATCAAAATCCTGGTCATCATCATCATCATCATCTTCTTCTTCTTCTTCCTGTTCTTCATTACGTTCAAATTCAAAACCTCTGGCCCAAGCCCTCAATCTCAATCGTGGGCAGCACATTTGAATGAATATAAACAGTATTAAGCAGATGAAAAACATAACAACGCAAAATGAGAAGGTATTCAAAATTGTTTCGAGTGTGATGAGACCGAAGAACATTCTGGAAAATTTCCTATAAGAAGCTCCATAAAGTGGCTTTCTACGACTAGTTTAAGCAAAGTTAGGGTCAAAACTAGTTTAAAAGAACGGTTTTTGAATTTTTGGCCTTAATTTTGATTCAATCAAAAATTTAATATTGAATTTAAATTCAGCAAAGTGAGAGCTTCGAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTCATTTTGGAGGCGCGTCGCGGTCGTGCGTCGCGTGCCGACGAGAAATTTTAAAGTGGCCGTTTAGGCTCATTATGAAGCTAACAAGGAGACCTTTGCACTAGCTACGATTTTAGTATGAAATATTAGACTACAAA</canonical>
            <polymorphic>CAAAATAAATTACAATTTCATATAATTCTGTAAAAAGCTCGGCCAGCTGGGAAGCATGTAAGAAGCTAGCTTGTATTACAATTCTTATGTTCAACATTTTTCAATGCTTCCTGCTGATTATAATTTTTGTTTGAATGTTGACGGATTATATATCATTTTGTAGCTCTTCTCAAAATCTACAGTTCACTGTTTTGAGATTTTCAAAATGTTGAGTTTGAAAGAAGTTACAGTCCAAAATGTAATGGAGCCAGGTGTAAGCTACCGCTATGCATCAGAATTTACCCTGTAACTTCCTTCAAACCCAACATTTTTGAAAAATTCAAAAAGTGAAATGTAGCATTTGAAAAGCGTTACCTGCCTACTATTAAAGAAAATCAATTAGATTCAGTTTTTCCTCTATTTCTTTCTGTTTTTTCCTCCTATTAATCAGAAATTGTTTTTCTATATCAAAATCCTGGTCATCATCATCATCATCATCTTCTTCTTCTTCTTCCTGTTCWTCATTACGTTCAAATTCAAAACCTCTGGCCCAAGCCCTCAATCTCAATCGTGGGCAGCACATTTGAATGAATATAAACAGTATTAAGCAGATGAAAAACATAACAACGCAAAATGAGAAGGTATTCAAAATTGTTTCGAGTGTGATGAGACCGAAGAACATTCTGGAAAATTTCCTATAAGAAGCTCCATAAAGTGGCTTTCTACGACTAGTTTAAGCAAAGTTAGGGTCAAAACTAGTTTAAAAGAACGGTTTTTGAATTTTTGGCCTTAATTTTGATTCAATCAAAAATTTAATATTGAATTTAAATTCAGCAAAGTGAGAGCTTCGAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTCATTTTGGAGGCGCGTCGCGGTCGTGCGTCGCGTGCCGACGAGAAATTTTAAAGTGGCCGTTTAGGCTCATTATGAAGCTAACAAGGAGACCTTTGCACTAGCTACGATTTTAGTATGAAATATTAGACTACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAGTTTTTCCTCTATTTCTTTC</pcr_primer_p1>
		<pcr_primer_p2>CAATTTTGAATACCTTCTCATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCAGTTTTTCCTCTATTTCTTTCTGTTTTTTCCTCCTATTAATCAGAAATTGTTTTTCTATATCAAAATCCTGGTCATCATCATCATCATCATCTTCTTCTTCTTCTTCCTGTTCTTCATTACGTTCAAATTCAAAACCTCTGGCCCAAGCCCTCAATCTCAATCGTGGGCAGCACATTTGAATGAATATAAACAGTATTAAGCAGATGAAAAACATAACAACGCAAAATGAGAAGGTATTCAAAATTG</canonical_amplicon>
		<polymorphic_amplicon>TTCAGTTTTTCCTCTATTTCTTTCTGTTTTTTCCTCCTATTAATCAGAAATTGTTTTTCTATATCAAAATCCTGGTCATCATCATCATCATCATCTTCTTCTTCTTCTTCCTGTTCWTCATTACGTTCAAATTCAAAACCTCTGGCCCAAGCCCTCAATCTCAATCGTGGGCAGCACATTTGAATGAATATAAACAGTATTAAGCAGATGAAAAACATAACAACGCAAAATGAGAAGGTATTCAAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28530</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>20221</contig_pos>
        <strand></strand>
        <context>tgaatttttg[G/A]ccttaatttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGCAAAGTTAGGGTCAAAACTAGTTTAAAAGAACGGTTTTTGAATTTTTG</left_flank>
        <right_flank>CCTTAATTTTGATTCAATCAAAAATTTAATATTGAATTTAAATTCAGCAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGCATCAGAATTTACCCTGTAACTTCCTTCAAACCCAACATTTTTGAAAAATTCAAAAAGTGAAATGTAGCATTTGAAAAGCGTTACCTGCCTACTATTAAAGAAAATCAATTAGATTCAGTTTTTCCTCTATTTCTTTCTGTTTTTTCCTCCTATTAATCAGAAATTGTTTTTCTATATCAAAATCCTGGTCATCATCATCATCATCATCTTCTTCTTCTTCTTCCTGTTCTTCATTACGTTCAAATTCAAAACCTCTGGCCCAAGCCCTCAATCTCAATCGTGGGCAGCACATTTGAATGAATATAAACAGTATTAAGCAGATGAAAAACATAACAACGCAAAATGAGAAGGTATTCAAAATTGTTTCGAGTGTGATGAGACCGAAGAACATTCTGGAAAATTTCCTATAAGAAGCTCCATAAAGTGGCTTTCTACGACTAGTTTAAGCAAAGTTAGGGTCAAAACTAGTTTAAAAGAACGGTTTTTGAATTTTTGGCCTTAATTTTGATTCAATCAAAAATTTAATATTGAATTTAAATTCAGCAAAGTGAGAGCTTCGAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTCATTTTGGAGGCGCGTCGCGGTCGTGCGTCGCGTGCCGACGAGAAATTTTAAAGTGGCCGTTTAGGCTCATTATGAAGCTAACAAGGAGACCTTTGCACTAGCTACGATTTTAGTATGAAATATTAGACTACAAACTACAAATTAAGACACCTTGAGCGCTGGTGAAGGGCTTCCTTCCTTAAAGGCGCATATCTCAAAAACTACAGTATCCAGATAAAAACGTTCAACAGCAAAACTGTCTGAAATTTAACGTTGAGCATTGTTGTAGTTGAAAATTTTTGTCTAGGTACCGTAGTTTTTGAGATATGAGTCTTTAACAAGAAGCAGACATTTCTATCGCGGATAAGATATGTCTTTTTTAAAGACGCATATCTCGAAAACTACAGTACCTAGACAAAAA</canonical>
            <polymorphic>ATGCATCAGAATTTACCCTGTAACTTCCTTCAAACCCAACATTTTTGAAAAATTCAAAAAGTGAAATGTAGCATTTGAAAAGCGTTACCTGCCTACTATTAAAGAAAATCAATTAGATTCAGTTTTTCCTCTATTTCTTTCTGTTTTTTCCTCCTATTAATCAGAAATTGTTTTTCTATATCAAAATCCTGGTCATCATCATCATCATCATCTTCTTCTTCTTCTTCCTGTTCTTCATTACGTTCAAATTCAAAACCTCTGGCCCAAGCCCTCAATCTCAATCGTGGGCAGCACATTTGAATGAATATAAACAGTATTAAGCAGATGAAAAACATAACAACGCAAAATGAGAAGGTATTCAAAATTGTTTCGAGTGTGATGAGACCGAAGAACATTCTGGAAAATTTCCTATAAGAAGCTCCATAAAGTGGCTTTCTACGACTAGTTTAAGCAAAGTTAGGGTCAAAACTAGTTTAAAAGAACGGTTTTTGAATTTTTGRCCTTAATTTTGATTCAATCAAAAATTTAATATTGAATTTAAATTCAGCAAAGTGAGAGCTTCGAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTCATTTTGGAGGCGCGTCGCGGTCGTGCGTCGCGTGCCGACGAGAAATTTTAAAGTGGCCGTTTAGGCTCATTATGAAGCTAACAAGGAGACCTTTGCACTAGCTACGATTTTAGTATGAAATATTAGACTACAAACTACAAATTAAGACACCTTGAGCGCTGGTGAAGGGCTTCCTTCCTTAAAGGCGCATATCTCAAAAACTACAGTATCCAGATAAAAACGTTCAACAGCAAAACTGTCTGAAATTTAACGTTGAGCATTGTTGTAGTTGAAAATTTTTGTCTAGGTACCGTAGTTTTTGAGATATGAGTCTTTAACAAGAAGCAGACATTTCTATCGCGGATAAGATATGTCTTTTTTAAAGACGCATATCTCGAAAACTACAGTACCTAGACAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>344 262 238 156</canonical_bands>
                <polymorphic_bands>394 344 262</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>262 231 150 70 69 68 58 24 16 13 12 12 9 6</canonical_bands>
                <polymorphic_bands>262 231 150 127 70 68 24 16 13 12 12 9 6</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAGCAAAGTTAGGGTCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CGTAGCTAGTGCAAAGGTCT</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>TAAGCAAAGTTAGGGTCAAAACTAGTTTAAAAGAACGGTTTTTGAATTTTTGGCCTTAATTTTGATTCAATCAAAAATTTAATATTGAATTTAAATTCAGCAAAGTGAGAGCTTCGAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTCATTTTGGAGGCGCGTCGCGGTCGTGCGTCGCGTGCCGACGAGAAATTTTAAAGTGGCCGTTTAGGCTCATTATGAAGCTAACAAGGAGACCTTTGCACTAGCTACG</canonical_amplicon>
		<polymorphic_amplicon>TAAGCAAAGTTAGGGTCAAAACTAGTTTAAAAGAACGGTTTTTGAATTTTTGRCCTTAATTTTGATTCAATCAAAAATTTAATATTGAATTTAAATTCAGCAAAGTGAGAGCTTCGAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTCATTTTGGAGGCGCGTCGCGGTCGTGCGTCGCGTGCCGACGAGAAATTTTAAAGTGGCCGTTTAGGCTCATTATGAAGCTAACAAGGAGACCTTTGCACTAGCTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28531</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>20247</contig_pos>
        <strand></strand>
        <context>aatcaaaaat[T/C]taatattgaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAAGAACGGTTTTTGAATTTTTGGCCTTAATTTTGATTCAATCAAAAAT</left_flank>
        <right_flank>TAATATTGAATTTAAATTCAGCAAAGTGAGAGCTTCGAAATGAGCCCAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTCAAACCCAACATTTTTGAAAAATTCAAAAAGTGAAATGTAGCATTTGAAAAGCGTTACCTGCCTACTATTAAAGAAAATCAATTAGATTCAGTTTTTCCTCTATTTCTTTCTGTTTTTTCCTCCTATTAATCAGAAATTGTTTTTCTATATCAAAATCCTGGTCATCATCATCATCATCATCTTCTTCTTCTTCTTCCTGTTCTTCATTACGTTCAAATTCAAAACCTCTGGCCCAAGCCCTCAATCTCAATCGTGGGCAGCACATTTGAATGAATATAAACAGTATTAAGCAGATGAAAAACATAACAACGCAAAATGAGAAGGTATTCAAAATTGTTTCGAGTGTGATGAGACCGAAGAACATTCTGGAAAATTTCCTATAAGAAGCTCCATAAAGTGGCTTTCTACGACTAGTTTAAGCAAAGTTAGGGTCAAAACTAGTTTAAAAGAACGGTTTTTGAATTTTTGGCCTTAATTTTGATTCAATCAAAAATTTAATATTGAATTTAAATTCAGCAAAGTGAGAGCTTCGAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTCATTTTGGAGGCGCGTCGCGGTCGTGCGTCGCGTGCCGACGAGAAATTTTAAAGTGGCCGTTTAGGCTCATTATGAAGCTAACAAGGAGACCTTTGCACTAGCTACGATTTTAGTATGAAATATTAGACTACAAACTACAAATTAAGACACCTTGAGCGCTGGTGAAGGGCTTCCTTCCTTAAAGGCGCATATCTCAAAAACTACAGTATCCAGATAAAAACGTTCAACAGCAAAACTGTCTGAAATTTAACGTTGAGCATTGTTGTAGTTGAAAATTTTTGTCTAGGTACCGTAGTTTTTGAGATATGAGTCTTTAACAAGAAGCAGACATTTCTATCGCGGATAAGATATGTCTTTTTTAAAGACGCATATCTCGAAAACTACAGTACCTAGACAAAAACTGTAAATTGCAAAAATATCTAAAAT</canonical>
            <polymorphic>CCTTCAAACCCAACATTTTTGAAAAATTCAAAAAGTGAAATGTAGCATTTGAAAAGCGTTACCTGCCTACTATTAAAGAAAATCAATTAGATTCAGTTTTTCCTCTATTTCTTTCTGTTTTTTCCTCCTATTAATCAGAAATTGTTTTTCTATATCAAAATCCTGGTCATCATCATCATCATCATCTTCTTCTTCTTCTTCCTGTTCTTCATTACGTTCAAATTCAAAACCTCTGGCCCAAGCCCTCAATCTCAATCGTGGGCAGCACATTTGAATGAATATAAACAGTATTAAGCAGATGAAAAACATAACAACGCAAAATGAGAAGGTATTCAAAATTGTTTCGAGTGTGATGAGACCGAAGAACATTCTGGAAAATTTCCTATAAGAAGCTCCATAAAGTGGCTTTCTACGACTAGTTTAAGCAAAGTTAGGGTCAAAACTAGTTTAAAAGAACGGTTTTTGAATTTTTGGCCTTAATTTTGATTCAATCAAAAATYTAATATTGAATTTAAATTCAGCAAAGTGAGAGCTTCGAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTCATTTTGGAGGCGCGTCGCGGTCGTGCGTCGCGTGCCGACGAGAAATTTTAAAGTGGCCGTTTAGGCTCATTATGAAGCTAACAAGGAGACCTTTGCACTAGCTACGATTTTAGTATGAAATATTAGACTACAAACTACAAATTAAGACACCTTGAGCGCTGGTGAAGGGCTTCCTTCCTTAAAGGCGCATATCTCAAAAACTACAGTATCCAGATAAAAACGTTCAACAGCAAAACTGTCTGAAATTTAACGTTGAGCATTGTTGTAGTTGAAAATTTTTGTCTAGGTACCGTAGTTTTTGAGATATGAGTCTTTAACAAGAAGCAGACATTTCTATCGCGGATAAGATATGTCTTTTTTAAAGACGCATATCTCGAAAACTACAGTACCTAGACAAAAACTGTAAATTGCAAAAATATCTAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>200 196 156 153 103 89 31 30 24 12 6</canonical_bands>
                <polymorphic_bands>200 196 156 153 103 89 43 30 24 6</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>160 130 110 94 73 68 67 67 58 45 37 29 27 23 12</canonical_bands>
                <polymorphic_bands>160 130 110 94 73 68 67 67 58 45 37 35 29 27</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>132 116 104 103 96 89 81 60 55 40 30 24 21 18 13 12 6</canonical_bands>
                <polymorphic_bands>132 116 104 103 96 89 81 60 55 40 30 30 24 21 13 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCAAAGTTAGGGTCAAAACTA</pcr_primer_p1>
		<pcr_primer_p2>CGTAGCTAGTGCAAAGGTCT</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>AGCAAAGTTAGGGTCAAAACTAGTTTAAAAGAACGGTTTTTGAATTTTTGGCCTTAATTTTGATTCAATCAAAAATTTAATATTGAATTTAAATTCAGCAAAGTGAGAGCTTCGAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTCATTTTGGAGGCGCGTCGCGGTCGTGCGTCGCGTGCCGACGAGAAATTTTAAAGTGGCCGTTTAGGCTCATTATGAAGCTAACAAGGAGACCTTTGCACTAGCTACG</canonical_amplicon>
		<polymorphic_amplicon>AGCAAAGTTAGGGTCAAAACTAGTTTAAAAGAACGGTTTTTGAATTTTTGGCCTTAATTTTGATTCAATCAAAAATYTAATATTGAATTTAAATTCAGCAAAGTGAGAGCTTCGAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTCATTTTGGAGGCGCGTCGCGGTCGTGCGTCGCGTGCCGACGAGAAATTTTAAAGTGGCCGTTTAGGCTCATTATGAAGCTAACAAGGAGACCTTTGCACTAGCTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28532</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>21896</contig_pos>
        <strand></strand>
        <context>taacaaaaaa[G/T]tgtcaactgc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GACACTCTCCGNNNNNNNNNNCCTCAAAAACTTCAATACCTAACAAAAAA</left_flank>
        <right_flank>TGTCAACTGCAAAATTGCTCAGCATAAAATTTTACACATTTTTGTAGCAT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTTTATGAGAAAGTCAATTTTCGTGTTTATTTTTATTAAAACTCCATGGTAATACTAGGAAAATCAATTTTTGAACAAATTTTGGAATAAAAAACATTTTTTTGAATTTTTTCCATTAATTGTAAGGTTCATAAATCTGTTTATATGAATGTCTGCATTTCTGGACAAATAATTTATTAAAAAGAAAAAGTATGGATTTATCAATTAAAAATGATTTCCTGCAAAAATTACTTGCTGAAAAACAGAAGTTTAGCGATAAAATAAAGGATAAACCAAATAATAAGAGTGGCTGAATCTGAAAATCAATTATTATCTCATTTTTAAAAGACTTACTAACAAGTTACCAATTACAAAACTGTGTTAAATTCAATTTCACACATTTTTGTAATTGACAACTTTTTTCTAGCTACTGTAGTTTTTGAGATATGCGCCTTTAAAGAGACGCAGACACTCTCCGNNNNNNNNNNCCTCAAAAACTTCAATACCTAACAAAAAAGTGTCAACTGCAAAATTGCTCAGCATAAAATTTTACACATTTTTGTAGCATTTTACGTTTTGATAGCTACTGTAGTTTTTGAGATATGTGACCTACAAAAATCAATAAAATCCGATTGACTTCAAACATTCGATGAGTCGCTTTTCCTGCTCTTCTCGATCTTTGAGAAGTTTCCCAGTGTCCTCCTCAAAATTTCCAGAATCTCCAGAATCTTCTGGAATCTTTAAAAAATCGTTCTCCTCGAAAATTCCAGATTTTTGAGCATTGGAAAAGCACTTATTGATAATCAAAAATAGAACAAATAGGAGAATAATGAAACCGAGGTACAAAAATAGCATTTTTGGCATTGCCATTGATCCAATTATCCACTTTTCATGAGCAATCGAAGTTAAGGATGAGCAATTGAGAAAAATGTGCATTTTTAGCAGAAAATTTTAAGTATAATTTCAGCAAATTAAGTTCTGAAAATCTGACAAAAAAGTGAAAATAGCGAAAATTGTT</canonical>
            <polymorphic>GTTTTTTATGAGAAAGTCAATTTTCGTGTTTATTTTTATTAAAACTCCATGGTAATACTAGGAAAATCAATTTTTGAACAAATTTTGGAATAAAAAACATTTTTTTGAATTTTTTCCATTAATTGTAAGGTTCATAAATCTGTTTATATGAATGTCTGCATTTCTGGACAAATAATTTATTAAAAAGAAAAAGTATGGATTTATCAATTAAAAATGATTTCCTGCAAAAATTACTTGCTGAAAAACAGAAGTTTAGCGATAAAATAAAGGATAAACCAAATAATAAGAGTGGCTGAATCTGAAAATCAATTATTATCTCATTTTTAAAAGACTTACTAACAAGTTACCAATTACAAAACTGTGTTAAATTCAATTTCACACATTTTTGTAATTGACAACTTTTTTCTAGCTACTGTAGTTTTTGAGATATGCGCCTTTAAAGAGACGCAGACACTCTCCGNNNNNNNNNNCCTCAAAAACTTCAATACCTAACAAAAAAKTGTCAACTGCAAAATTGCTCAGCATAAAATTTTACACATTTTTGTAGCATTTTACGTTTTGATAGCTACTGTAGTTTTTGAGATATGTGACCTACAAAAATCAATAAAATCCGATTGACTTCAAACATTCGATGAGTCGCTTTTCCTGCTCTTCTCGATCTTTGAGAAGTTTCCCAGTGTCCTCCTCAAAATTTCCAGAATCTCCAGAATCTTCTGGAATCTTTAAAAAATCGTTCTCCTCGAAAATTCCAGATTTTTGAGCATTGGAAAAGCACTTATTGATAATCAAAAATAGAACAAATAGGAGAATAATGAAACCGAGGTACAAAAATAGCATTTTTGGCATTGCCATTGATCCAATTATCCACTTTTCATGAGCAATCGAAGTTAAGGATGAGCAATTGAGAAAAATGTGCATTTTTAGCAGAAAATTTTAAGTATAATTTCAGCAAATTAAGTTCTGAAAATCTGACAAAAAAGTGAAAATAGCGAAAATTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>263 95 93 90 73 72 67 53 49 48 34 28 18 15 2</canonical_bands>
                <polymorphic_bands>263 95 93 90 83 73 72 67 53 48 28 18 15 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGTGGCTGAATCTGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCGGATTTTATTGATTTTTGTAG</pcr_primer_p2>
		<pcr_amplicon_size>329</pcr_amplicon_size>
		<canonical_amplicon>AGAGTGGCTGAATCTGAAAATCAATTATTATCTCATTTTTAAAAGACTTACTAACAAGTTACCAATTACAAAACTGTGTTAAATTCAATTTCACACATTTTTGTAATTGACAACTTTTTTCTAGCTACTGTAGTTTTTGAGATATGCGCCTTTAAAGAGACGCAGACACTCTCCGNNNNNNNNNNCCTCAAAAACTTCAATACCTAACAAAAAAGTGTCAACTGCAAAATTGCTCAGCATAAAATTTTACACATTTTTGTAGCATTTTACGTTTTGATAGCTACTGTAGTTTTTGAGATATGTGACCTACAAAAATCAATAAAATCCGA</canonical_amplicon>
		<polymorphic_amplicon>AGAGTGGCTGAATCTGAAAATCAATTATTATCTCATTTTTAAAAGACTTACTAACAAGTTACCAATTACAAAACTGTGTTAAATTCAATTTCACACATTTTTGTAATTGACAACTTTTTTCTAGCTACTGTAGTTTTTGAGATATGCGCCTTTAAAGAGACGCAGACACTCTCCGNNNNNNNNNNCCTCAAAAACTTCAATACCTAACAAAAAAKTGTCAACTGCAAAATTGCTCAGCATAAAATTTTACACATTTTTGTAGCATTTTACGTTTTGATAGCTACTGTAGTTTTTGAGATATGTGACCTACAAAAATCAATAAAATCCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28533</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>39065</contig_pos>
        <strand>+</strand>
        <context>AACAGTTTCC[A/T]AAAAATGTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTACTGCAGCTGGAATAGTGGCTGACGCATCAAAATTCTAACAGTTTCC</left_flank>
        <right_flank>AAAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTCAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTTGAGCTAAAATTCACAATCAAATAGGCTGAAAATGACTAGAAATAGTGAAAAAATCATGAAAATTGGACTAAAATGAGCCAAAATACCCCAAAATAGATGGAAACTGGCCTAAAAAGGGCCTGAAAAGCCTAAAAATAAGGCCTTACCAAACATTTCTTTTTGTTTGGAGAGCATATTGATAAAGGTATCTGGAACCTGCTTGAGACATCTATCGATTCGTTGGTCCTGAAAATTTTTTTTTTTGGATTACTGTAATTTTGATTACGGTAGTTGGAAAGTGTCAGTCTGTGTGTCTGTCTAAACAAAATTTATCTCGAGATCGATCGCAATTTCAAAATATTTCAAAATTTTTAATTTTTTTTGAAGCAGCAAAAATTTTTTTTGTAATTTTTTGATTACTGTAGTTTGGAGACTACTGTAATCACTTTTTCGGGTTTACTTGGGATTACTGCAGCTGGAATAGTGGCTGACGCATCAAAATTCTAACAGTTTCCAAAAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTCAGATATTTTTCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGAATGATTTTATCAGCAAAAGTTGCCAATTTTAAAAATTCTTTTAAAAAATTTGAAACAGTAATTTTTTTTTGGAATTTTCGGAAAACAAAACACTTTTTTGGATTACTGTAGTTACATCTTTTTGGCCTTTCGGGATTACTGTATTTTTAGAAACCGTACAATGATAGTATCCAAAGCATCAAAATAAGAACCTCTCTAAAATTTTCGAAAATTTAGAAATTTTTAACAGTAATTTTTTCCTTTTTTTTCGAAATTTTCAAAATACTACTGTAGTTTGGGAATTGCTGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCGCATCACAGTTTTAACAGTTTCCAAAAAAT</canonical>
            <polymorphic>CTGTTGAGCTAAAATTCACAATCAAATAGGCTGAAAATGACTAGAAATAGTGAAAAAATCATGAAAATTGGACTAAAATGAGCCAAAATACCCCAAAATAGATGGAAACTGGCCTAAAAAGGGCCTGAAAAGCCTAAAAATAAGGCCTTACCAAACATTTCTTTTTGTTTGGAGAGCATATTGATAAAGGTATCTGGAACCTGCTTGAGACATCTATCGATTCGTTGGTCCTGAAAATTTTTTTTTTTGGATTACTGTAATTTTGATTACGGTAGTTGGAAAGTGTCAGTCTGTGTGTCTGTCTAAACAAAATTTATCTCGAGATCGATCGCAATTTCAAAATATTTCAAAATTTTTAATTTTTTTTGAAGCAGCAAAAATTTTTTTTGTAATTTTTTGATTACTGTAGTTTGGAGACTACTGTAATCACTTTTTCGGGTTTACTTGGGATTACTGCAGCTGGAATAGTGGCTGACGCATCAAAATTCTAACAGTTTCCWAAAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTCAGATATTTTTCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGAATGATTTTATCAGCAAAAGTTGCCAATTTTAAAAATTCTTTTAAAAAATTTGAAACAGTAATTTTTTTTTGGAATTTTCGGAAAACAAAACACTTTTTTGGATTACTGTAGTTACATCTTTTTGGCCTTTCGGGATTACTGTATTTTTAGAAACCGTACAATGATAGTATCCAAAGCATCAAAATAAGAACCTCTCTAAAATTTTCGAAAATTTAGAAATTTTTAACAGTAATTTTTTCCTTTTTTTTCGAAATTTTCAAAATACTACTGTAGTTTGGGAATTGCTGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCGCATCACAGTTTTAACAGTTTCCAAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGATTACTGTAGTTTGGAGA</pcr_primer_p1>
		<pcr_primer_p2>TCTAACAGACGCGTTTCTAATAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGATTACTGTAGTTTGGAGACTACTGTAATCACTTTTTCGGGTTTACTTGGGATTACTGCAGCTGGAATAGTGGCTGACGCATCAAAATTCTAACAGTTTCCAAAAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTCAGATATTTTTCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGATTACTGTAGTTTGGAGACTACTGTAATCACTTTTTCGGGTTTACTTGGGATTACTGCAGCTGGAATAGTGGCTGACGCATCAAAATTCTAACAGTTTCCWAAAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTCAGATATTTTTCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28534</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>39097</contig_pos>
        <strand>+</strand>
        <context>AACAGTATAT[A/T]TTTTTTGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATTCTAACAGTTTCCAAAAAATGTCAAAAAAGTTTGAAACAGTATAT</left_flank>
        <right_flank>TTTTTTGAAAAATTCAGATATTTTTCGGATTACTGTAGTTTGGATCATAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAATGACTAGAAATAGTGAAAAAATCATGAAAATTGGACTAAAATGAGCCAAAATACCCCAAAATAGATGGAAACTGGCCTAAAAAGGGCCTGAAAAGCCTAAAAATAAGGCCTTACCAAACATTTCTTTTTGTTTGGAGAGCATATTGATAAAGGTATCTGGAACCTGCTTGAGACATCTATCGATTCGTTGGTCCTGAAAATTTTTTTTTTTGGATTACTGTAATTTTGATTACGGTAGTTGGAAAGTGTCAGTCTGTGTGTCTGTCTAAACAAAATTTATCTCGAGATCGATCGCAATTTCAAAATATTTCAAAATTTTTAATTTTTTTTGAAGCAGCAAAAATTTTTTTTGTAATTTTTTGATTACTGTAGTTTGGAGACTACTGTAATCACTTTTTCGGGTTTACTTGGGATTACTGCAGCTGGAATAGTGGCTGACGCATCAAAATTCTAACAGTTTCCAAAAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTCAGATATTTTTCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGAATGATTTTATCAGCAAAAGTTGCCAATTTTAAAAATTCTTTTAAAAAATTTGAAACAGTAATTTTTTTTTGGAATTTTCGGAAAACAAAACACTTTTTTGGATTACTGTAGTTACATCTTTTTGGCCTTTCGGGATTACTGTATTTTTAGAAACCGTACAATGATAGTATCCAAAGCATCAAAATAAGAACCTCTCTAAAATTTTCGAAAATTTAGAAATTTTTAACAGTAATTTTTTCCTTTTTTTTCGAAATTTTCAAAATACTACTGTAGTTTGGGAATTGCTGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCGCATCACAGTTTTAACAGTTTCCAAAAAATATCAAAAATATTTGAAACGGTATTTTTTTAAA</canonical>
            <polymorphic>GAAAATGACTAGAAATAGTGAAAAAATCATGAAAATTGGACTAAAATGAGCCAAAATACCCCAAAATAGATGGAAACTGGCCTAAAAAGGGCCTGAAAAGCCTAAAAATAAGGCCTTACCAAACATTTCTTTTTGTTTGGAGAGCATATTGATAAAGGTATCTGGAACCTGCTTGAGACATCTATCGATTCGTTGGTCCTGAAAATTTTTTTTTTTGGATTACTGTAATTTTGATTACGGTAGTTGGAAAGTGTCAGTCTGTGTGTCTGTCTAAACAAAATTTATCTCGAGATCGATCGCAATTTCAAAATATTTCAAAATTTTTAATTTTTTTTGAAGCAGCAAAAATTTTTTTTGTAATTTTTTGATTACTGTAGTTTGGAGACTACTGTAATCACTTTTTCGGGTTTACTTGGGATTACTGCAGCTGGAATAGTGGCTGACGCATCAAAATTCTAACAGTTTCCAAAAAATGTCAAAAAAGTTTGAAACAGTATATWTTTTTTGAAAAATTCAGATATTTTTCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGAATGATTTTATCAGCAAAAGTTGCCAATTTTAAAAATTCTTTTAAAAAATTTGAAACAGTAATTTTTTTTTGGAATTTTCGGAAAACAAAACACTTTTTTGGATTACTGTAGTTACATCTTTTTGGCCTTTCGGGATTACTGTATTTTTAGAAACCGTACAATGATAGTATCCAAAGCATCAAAATAAGAACCTCTCTAAAATTTTCGAAAATTTAGAAATTTTTAACAGTAATTTTTTCCTTTTTTTTCGAAATTTTCAAAATACTACTGTAGTTTGGGAATTGCTGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCGCATCACAGTTTTAACAGTTTCCAAAAAATATCAAAAATATTTGAAACGGTATTTTTTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGATTACTGTAGTTTGGAGA</pcr_primer_p1>
		<pcr_primer_p2>TCTAACAGACGCGTTTCTAATAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGATTACTGTAGTTTGGAGACTACTGTAATCACTTTTTCGGGTTTACTTGGGATTACTGCAGCTGGAATAGTGGCTGACGCATCAAAATTCTAACAGTTTCCAAAAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTCAGATATTTTTCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGATTACTGTAGTTTGGAGACTACTGTAATCACTTTTTCGGGTTTACTTGGGATTACTGCAGCTGGAATAGTGGCTGACGCATCAAAATTCTAACAGTTTCCAAAAAATGTCAAAAAAGTTTGAAACAGTATATWTTTTTTGAAAAATTCAGATATTTTTCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28535</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>39122</contig_pos>
        <strand>+</strand>
        <context>YAGATWTTTT[C/T]CGGATTACTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTCAGATATTTT</left_flank>
        <right_flank>CGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCATGAAAATTGGACTAAAATGAGCCAAAATACCCCAAAATAGATGGAAACTGGCCTAAAAAGGGCCTGAAAAGCCTAAAAATAAGGCCTTACCAAACATTTCTTTTTGTTTGGAGAGCATATTGATAAAGGTATCTGGAACCTGCTTGAGACATCTATCGATTCGTTGGTCCTGAAAATTTTTTTTTTTGGATTACTGTAATTTTGATTACGGTAGTTGGAAAGTGTCAGTCTGTGTGTCTGTCTAAACAAAATTTATCTCGAGATCGATCGCAATTTCAAAATATTTCAAAATTTTTAATTTTTTTTGAAGCAGCAAAAATTTTTTTTGTAATTTTTTGATTACTGTAGTTTGGAGACTACTGTAATCACTTTTTCGGGTTTACTTGGGATTACTGCAGCTGGAATAGTGGCTGACGCATCAAAATTCTAACAGTTTCCAAAAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTCAGATATTTTTCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGAATGATTTTATCAGCAAAAGTTGCCAATTTTAAAAATTCTTTTAAAAAATTTGAAACAGTAATTTTTTTTTGGAATTTTCGGAAAACAAAACACTTTTTTGGATTACTGTAGTTACATCTTTTTGGCCTTTCGGGATTACTGTATTTTTAGAAACCGTACAATGATAGTATCCAAAGCATCAAAATAAGAACCTCTCTAAAATTTTCGAAAATTTAGAAATTTTTAACAGTAATTTTTTCCTTTTTTTTCGAAATTTTCAAAATACTACTGTAGTTTGGGAATTGCTGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCGCATCACAGTTTTAACAGTTTCCAAAAAATATCAAAAATATTTGAAACGGTATTTTTTTAAACACAAATTCAGATTTTTTTTCGGAT</canonical>
            <polymorphic>ATCATGAAAATTGGACTAAAATGAGCCAAAATACCCCAAAATAGATGGAAACTGGCCTAAAAAGGGCCTGAAAAGCCTAAAAATAAGGCCTTACCAAACATTTCTTTTTGTTTGGAGAGCATATTGATAAAGGTATCTGGAACCTGCTTGAGACATCTATCGATTCGTTGGTCCTGAAAATTTTTTTTTTTGGATTACTGTAATTTTGATTACGGTAGTTGGAAAGTGTCAGTCTGTGTGTCTGTCTAAACAAAATTTATCTCGAGATCGATCGCAATTTCAAAATATTTCAAAATTTTTAATTTTTTTTGAAGCAGCAAAAATTTTTTTTGTAATTTTTTGATTACTGTAGTTTGGAGACTACTGTAATCACTTTTTCGGGTTTACTTGGGATTACTGCAGCTGGAATAGTGGCTGACGCATCAAAATTCTAACAGTTTCCAAAAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTCAGATATTTTYCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGAATGATTTTATCAGCAAAAGTTGCCAATTTTAAAAATTCTTTTAAAAAATTTGAAACAGTAATTTTTTTTTGGAATTTTCGGAAAACAAAACACTTTTTTGGATTACTGTAGTTACATCTTTTTGGCCTTTCGGGATTACTGTATTTTTAGAAACCGTACAATGATAGTATCCAAAGCATCAAAATAAGAACCTCTCTAAAATTTTCGAAAATTTAGAAATTTTTAACAGTAATTTTTTCCTTTTTTTTCGAAATTTTCAAAATACTACTGTAGTTTGGGAATTGCTGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCGCATCACAGTTTTAACAGTTTCCAAAAAATATCAAAAATATTTGAAACGGTATTTTTTTAAACACAAATTCAGATTTTTTTTCGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>491 319 164 12 11 3</canonical_bands>
                <polymorphic_bands>491 319 175 12 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGATTACTGTAGTTTGGAGA</pcr_primer_p1>
		<pcr_primer_p2>TCTAACAGACGCGTTTCTAATAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGATTACTGTAGTTTGGAGACTACTGTAATCACTTTTTCGGGTTTACTTGGGATTACTGCAGCTGGAATAGTGGCTGACGCATCAAAATTCTAACAGTTTCCAAAAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTCAGATATTTTTCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGATTACTGTAGTTTGGAGACTACTGTAATCACTTTTTCGGGTTTACTTGGGATTACTGCAGCTGGAATAGTGGCTGACGCATCAAAATTCTAACAGTTTCCAAAAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTCAGATATTTTYCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28536</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>39442</contig_pos>
        <strand>+</strand>
        <context>TAACAGTAAT[A/C]TTTTCCTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATAAGAACCTCTCTAAAATTTTCGAAAATTTAGAAATTTTTAACAGTAAT</left_flank>
        <right_flank>TTTTCCTTTTTTTTCGAAATTTTCAAAATACTACTGTAGTTTGGGAATTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTTTTTTGTAATTTTTTGATTACTGTAGTTTGGAGACTACTGTAATCACTTTTTCGGGTTTACTTGGGATTACTGCAGCTGGAATAGTGGCTGACGCATCAAAATTCTAACAGTTTCCAAAAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTCAGATATTTTTCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGAATGATTTTATCAGCAAAAGTTGCCAATTTTAAAAATTCTTTTAAAAAATTTGAAACAGTAATTTTTTTTTGGAATTTTCGGAAAACAAAACACTTTTTTGGATTACTGTAGTTACATCTTTTTGGCCTTTCGGGATTACTGTATTTTTAGAAACCGTACAATGATAGTATCCAAAGCATCAAAATAAGAACCTCTCTAAAATTTTCGAAAATTTAGAAATTTTTAACAGTAATTTTTTCCTTTTTTTTCGAAATTTTCAAAATACTACTGTAGTTTGGGAATTGCTGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCGCATCACAGTTTTAACAGTTTCCAAAAAATATCAAAAATATTTGAAACGGTATTTTTTTAAACACAAATTCAGATTTTTTTTCGGATTACTGTAGTTTGGATCGTACTGTATTCATTTTTCTGGTCGGTATTTTTTGGTAATGTATCAGAAACGCGTCTGTTAGAATGTAGGTACCAGATTTTATCAGCAAACGTTGCCAATTTTAGAAATTCTCCCAATAAAAATTTGAAAAAGTAAATTTATTTAGATTTTCGGAGAAAACCTATTTTCGGATTACTGTAGTTCTTTTTTGGCTTTTTGGGATTATAGCGCTTGGAAGATCAAATATGAACTTTTTTTTCCGAAAATCGGAAAATTTTGAAAGAGTAAAATTTTTGAAATTTTTCGAAAATTTTAAACAACTACT</canonical>
            <polymorphic>AAATTTTTTTTGTAATTTTTTGATTACTGTAGTTTGGAGACTACTGTAATCACTTTTTCGGGTTTACTTGGGATTACTGCAGCTGGAATAGTGGCTGACGCATCAAAATTCTAACAGTTTCCAAAAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTCAGATATTTTTCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGAATGATTTTATCAGCAAAAGTTGCCAATTTTAAAAATTCTTTTAAAAAATTTGAAACAGTAATTTTTTTTTGGAATTTTCGGAAAACAAAACACTTTTTTGGATTACTGTAGTTACATCTTTTTGGCCTTTCGGGATTACTGTATTTTTAGAAACCGTACAATGATAGTATCCAAAGCATCAAAATAAGAACCTCTCTAAAATTTTCGAAAATTTAGAAATTTTTAACAGTAATMTTTTCCTTTTTTTTCGAAATTTTCAAAATACTACTGTAGTTTGGGAATTGCTGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCGCATCACAGTTTTAACAGTTTCCAAAAAATATCAAAAATATTTGAAACGGTATTTTTTTAAACACAAATTCAGATTTTTTTTCGGATTACTGTAGTTTGGATCGTACTGTATTCATTTTTCTGGTCGGTATTTTTTGGTAATGTATCAGAAACGCGTCTGTTAGAATGTAGGTACCAGATTTTATCAGCAAACGTTGCCAATTTTAGAAATTCTCCCAATAAAAATTTGAAAAAGTAAATTTATTTAGATTTTCGGAGAAAACCTATTTTCGGATTACTGTAGTTCTTTTTTGGCTTTTTGGGATTATAGCGCTTGGAAGATCAAATATGAACTTTTTTTTCCGAAAATCGGAAAATTTTGAAAGAGTAAAATTTTTGAAATTTTTCGAAAATTTTAAACAACTACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>133 127 125 117 114 93 59 28 21 17 16 15 14 13 13 13 13 12 11 10 9 9 9 8 1</canonical_bands>
                <polymorphic_bands>133 127 125 117 114 93 59 34 28 17 16 15 14 13 13 13 12 11 10 9 9 9 8 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCATCAAAATAAGAACCTCTCTA</pcr_primer_p1>
		<pcr_primer_p2>CCAAACTACAGTAATCCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCATCAAAATAAGAACCTCTCTAAAATTTTCGAAAATTTAGAAATTTTTAACAGTAATTTTTTCCTTTTTTTTCGAAATTTTCAAAATACTACTGTAGTTTGGGAATTGCTGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCGCATCACAGTTTTAACAGTTTCCAAAAAATATCAAAAATATTTGAAACGGTATTTTTTTAAACACAAATTCAGATTTTTTTTCGGATTACTGTAGTTTGG</canonical_amplicon>
		<polymorphic_amplicon>GCATCAAAATAAGAACCTCTCTAAAATTTTCGAAAATTTAGAAATTTTTAACAGTAATMTTTTCCTTTTTTTTCGAAATTTTCAAAATACTACTGTAGTTTGGGAATTGCTGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCGCATCACAGTTTTAACAGTTTCCAAAAAATATCAAAAATATTTGAAACGGTATTTTTTTAAACACAAATTCAGATTTTTTTTCGGATTACTGTAGTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28537</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>39537</contig_pos>
        <strand>+</strand>
        <context>GGTGCCGGCG[C/T]ATCAMARTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAATTGCTGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCG</left_flank>
        <right_flank>ATCACAGTTTTAACAGTTTCCAAAAAATATCAAAAATATTTGAAACGGTA</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACGCATCAAAATTCTAACAGTTTCCAAAAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTCAGATATTTTTCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGAATGATTTTATCAGCAAAAGTTGCCAATTTTAAAAATTCTTTTAAAAAATTTGAAACAGTAATTTTTTTTTGGAATTTTCGGAAAACAAAACACTTTTTTGGATTACTGTAGTTACATCTTTTTGGCCTTTCGGGATTACTGTATTTTTAGAAACCGTACAATGATAGTATCCAAAGCATCAAAATAAGAACCTCTCTAAAATTTTCGAAAATTTAGAAATTTTTAACAGTAATTTTTTCCTTTTTTTTCGAAATTTTCAAAATACTACTGTAGTTTGGGAATTGCTGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCGCATCACAGTTTTAACAGTTTCCAAAAAATATCAAAAATATTTGAAACGGTATTTTTTTAAACACAAATTCAGATTTTTTTTCGGATTACTGTAGTTTGGATCGTACTGTATTCATTTTTCTGGTCGGTATTTTTTGGTAATGTATCAGAAACGCGTCTGTTAGAATGTAGGTACCAGATTTTATCAGCAAACGTTGCCAATTTTAGAAATTCTCCCAATAAAAATTTGAAAAAGTAAATTTATTTAGATTTTCGGAGAAAACCTATTTTCGGATTACTGTAGTTCTTTTTTGGCTTTTTGGGATTATAGCGCTTGGAAGATCAAATATGAACTTTTTTTTCCGAAAATCGGAAAATTTTGAAAGAGTAAAATTTTTGAAATTTTTCGAAAATTTTAAACAACTACTGTAGTTATTGGAATTATTTTAATTTTGACTGAAGGGAGCAGCAAAGAAAAACTGTTCAACTTTTCGAAAATTTTTGAAACAGTAATTTTTGAAAA</canonical>
            <polymorphic>TGACGCATCAAAATTCTAACAGTTTCCAAAAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTCAGATATTTTTCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGAATGATTTTATCAGCAAAAGTTGCCAATTTTAAAAATTCTTTTAAAAAATTTGAAACAGTAATTTTTTTTTGGAATTTTCGGAAAACAAAACACTTTTTTGGATTACTGTAGTTACATCTTTTTGGCCTTTCGGGATTACTGTATTTTTAGAAACCGTACAATGATAGTATCCAAAGCATCAAAATAAGAACCTCTCTAAAATTTTCGAAAATTTAGAAATTTTTAACAGTAATTTTTTCCTTTTTTTTCGAAATTTTCAAAATACTACTGTAGTTTGGGAATTGCTGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCGYATCACAGTTTTAACAGTTTCCAAAAAATATCAAAAATATTTGAAACGGTATTTTTTTAAACACAAATTCAGATTTTTTTTCGGATTACTGTAGTTTGGATCGTACTGTATTCATTTTTCTGGTCGGTATTTTTTGGTAATGTATCAGAAACGCGTCTGTTAGAATGTAGGTACCAGATTTTATCAGCAAACGTTGCCAATTTTAGAAATTCTCCCAATAAAAATTTGAAAAAGTAAATTTATTTAGATTTTCGGAGAAAACCTATTTTCGGATTACTGTAGTTCTTTTTTGGCTTTTTGGGATTATAGCGCTTGGAAGATCAAATATGAACTTTTTTTTCCGAAAATCGGAAAATTTTGAAAGAGTAAAATTTTTGAAATTTTTCGAAAATTTTAAACAACTACTGTAGTTATTGGAATTATTTTAATTTTGACTGAAGGGAGCAGCAAAGAAAAACTGTTCAACTTTTCGAAAATTTTTGAAACAGTAATTTTTGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>499 311 190</canonical_bands>
                <polymorphic_bands>810 190</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCATCAAAATAAGAACCTCTCTA</pcr_primer_p1>
		<pcr_primer_p2>CCAAACTACAGTAATCCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCATCAAAATAAGAACCTCTCTAAAATTTTCGAAAATTTAGAAATTTTTAACAGTAATTTTTTCCTTTTTTTTCGAAATTTTCAAAATACTACTGTAGTTTGGGAATTGCTGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCGCATCACAGTTTTAACAGTTTCCAAAAAATATCAAAAATATTTGAAACGGTATTTTTTTAAACACAAATTCAGATTTTTTTTCGGATTACTGTAGTTTGG</canonical_amplicon>
		<polymorphic_amplicon>GCATCAAAATAAGAACCTCTCTAAAATTTTCGAAAATTTAGAAATTTTTAACAGTAATTTTTTCCTTTTTTTTCGAAATTTTCAAAATACTACTGTAGTTTGGGAATTGCTGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCGYATCACAGTTTTAACAGTTTCCAAAAAATATCAAAAATATTTGAAACGGTATTTTTTTAAACACAAATTCAGATTTTTTTTCGGATTACTGTAGTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28538</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>39542</contig_pos>
        <strand>+</strand>
        <context>CGGCGYATCA[A/C]ARTTTTAACA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCTGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCGCATCA</left_flank>
        <right_flank>AGTTTTAACAGTTTCCAAAAAATATCAAAAATATTTGAAACGGTATTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCAAAATTCTAACAGTTTCCAAAAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTCAGATATTTTTCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGAATGATTTTATCAGCAAAAGTTGCCAATTTTAAAAATTCTTTTAAAAAATTTGAAACAGTAATTTTTTTTTGGAATTTTCGGAAAACAAAACACTTTTTTGGATTACTGTAGTTACATCTTTTTGGCCTTTCGGGATTACTGTATTTTTAGAAACCGTACAATGATAGTATCCAAAGCATCAAAATAAGAACCTCTCTAAAATTTTCGAAAATTTAGAAATTTTTAACAGTAATTTTTTCCTTTTTTTTCGAAATTTTCAAAATACTACTGTAGTTTGGGAATTGCTGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCGCATCACAGTTTTAACAGTTTCCAAAAAATATCAAAAATATTTGAAACGGTATTTTTTTAAACACAAATTCAGATTTTTTTTCGGATTACTGTAGTTTGGATCGTACTGTATTCATTTTTCTGGTCGGTATTTTTTGGTAATGTATCAGAAACGCGTCTGTTAGAATGTAGGTACCAGATTTTATCAGCAAACGTTGCCAATTTTAGAAATTCTCCCAATAAAAATTTGAAAAAGTAAATTTATTTAGATTTTCGGAGAAAACCTATTTTCGGATTACTGTAGTTCTTTTTTGGCTTTTTGGGATTATAGCGCTTGGAAGATCAAATATGAACTTTTTTTTCCGAAAATCGGAAAATTTTGAAAGAGTAAAATTTTTGAAATTTTTCGAAAATTTTAAACAACTACTGTAGTTATTGGAATTATTTTAATTTTGACTGAAGGGAGCAGCAAAGAAAAACTGTTCAACTTTTCGAAAATTTTTGAAACAGTAATTTTTGAAAATTTCG</canonical>
            <polymorphic>CATCAAAATTCTAACAGTTTCCAAAAAATGTCAAAAAAGTTTGAAACAGTATATTTTTTTTGAAAAATTCAGATATTTTTCGGATTACTGTAGTTTGGATCATACTGTATTTATTTTTCTGGTTTGTTTTTTTTTTTGATACTGTATTAGAAACGCGTCTGTTAGAATGATTTTATCAGCAAAAGTTGCCAATTTTAAAAATTCTTTTAAAAAATTTGAAACAGTAATTTTTTTTTGGAATTTTCGGAAAACAAAACACTTTTTTGGATTACTGTAGTTACATCTTTTTGGCCTTTCGGGATTACTGTATTTTTAGAAACCGTACAATGATAGTATCCAAAGCATCAAAATAAGAACCTCTCTAAAATTTTCGAAAATTTAGAAATTTTTAACAGTAATTTTTTCCTTTTTTTTCGAAATTTTCAAAATACTACTGTAGTTTGGGAATTGCTGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCGCATCAMAGTTTTAACAGTTTCCAAAAAATATCAAAAATATTTGAAACGGTATTTTTTTAAACACAAATTCAGATTTTTTTTCGGATTACTGTAGTTTGGATCGTACTGTATTCATTTTTCTGGTCGGTATTTTTTGGTAATGTATCAGAAACGCGTCTGTTAGAATGTAGGTACCAGATTTTATCAGCAAACGTTGCCAATTTTAGAAATTCTCCCAATAAAAATTTGAAAAAGTAAATTTATTTAGATTTTCGGAGAAAACCTATTTTCGGATTACTGTAGTTCTTTTTTGGCTTTTTGGGATTATAGCGCTTGGAAGATCAAATATGAACTTTTTTTTCCGAAAATCGGAAAATTTTGAAAGAGTAAAATTTTTGAAATTTTTCGAAAATTTTAAACAACTACTGTAGTTATTGGAATTATTTTAATTTTGACTGAAGGGAGCAGCAAAGAAAAACTGTTCAACTTTTCGAAAATTTTTGAAACAGTAATTTTTGAAAATTTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>171 128 80 73 66 53 50 42 41 41 37 33 32 32 28 19 17 17 16 15 9</canonical_bands>
                <polymorphic_bands>171 128 80 75 73 53 50 42 41 41 37 33 32 32 28 19 17 17 16 15</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>443 258 230 58 11</canonical_bands>
                <polymorphic_bands>443 258 230 69</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCATCAAAATAAGAACCTCTCTA</pcr_primer_p1>
		<pcr_primer_p2>CCAAACTACAGTAATCCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCATCAAAATAAGAACCTCTCTAAAATTTTCGAAAATTTAGAAATTTTTAACAGTAATTTTTTCCTTTTTTTTCGAAATTTTCAAAATACTACTGTAGTTTGGGAATTGCTGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCGCATCACAGTTTTAACAGTTTCCAAAAAATATCAAAAATATTTGAAACGGTATTTTTTTAAACACAAATTCAGATTTTTTTTCGGATTACTGTAGTTTGG</canonical_amplicon>
		<polymorphic_amplicon>GCATCAAAATAAGAACCTCTCTAAAATTTTCGAAAATTTAGAAATTTTTAACAGTAATTTTTTCCTTTTTTTTCGAAATTTTCAAAATACTACTGTAGTTTGGGAATTGCTGTAACTTTGACATGTACTGAAAAAAACCCATAGGTGCCGGCGCATCAMAGTTTTAACAGTTTCCAAAAAATATCAAAAATATTTGAAACGGTATTTTTTTAAACACAAATTCAGATTTTTTTTCGGATTACTGTAGTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28539</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>40828</contig_pos>
        <strand></strand>
        <context>TTTTGAAACA[T/G]WAATTTTTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACA</left_flank>
        <right_flank>TAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTGTAATTTCTGAAAAAAAATTGTTCAAGTATTTAAAGATTACTGTAGTTTTTGGATTCATTGTTATTTTTCATTGTTAATTTCGGGAAAAAAACTTATAAAAAATTTCTTGAATTACTGTAGTTTTGACTACGGTAGTTCAAAATAGTCTAAAATATCAACTTCTGATACTTATCGATCTATCAAGAATTTATTAGCATTTTTCAATTTTGGAAAAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATTTTTTGAAAAATTCTCTTTAAAAATTTTTCTGGATTACTGTAGTCTGGAGCACACTGTAATTTTTGTTTTCAGATTACTGTATTTTTCGACAACCAACCAAACTTTAAAGCAGCTACATTTCCTAAAAGTTTGATTTCCGAAAATTTTGAAACAGTAACTTT</canonical>
            <polymorphic>AACTGTAATTTCTGAAAAAAAATTGTTCAAGTATTTAAAGATTACTGTAGTTTTTGGATTCATTGTTATTTTTCATTGTTAATTTCGGGAAAAAAACTTATAAAAAATTTCTTGAATTACTGTAGTTTTGACTACGGTAGTTCAAAATAGTCTAAAATATCAACTTCTGATACTTATCGATCTATCAAGAATTTATTAGCATTTTTCAATTTTGGAAAAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACAKTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATTTTTTGAAAAATTCTCTTTAAAAATTTTTCTGGATTACTGTAGTCTGGAGCACACTGTAATTTTTGTTTTCAGATTACTGTATTTTTCGACAACCAACCAAACTTTAAAGCAGCTACATTTCCTAAAAGTTTGATTTCCGAAAATTTTGAAACAGTAACTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>277 167 144 140 87 57 49 44 35</canonical_bands>
                <polymorphic_bands>284 277 167 87 57 49 44 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGTGTGTTCAGCAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AACGAGAAAAAGAATGATTACAG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTT</canonical_amplicon>
		<polymorphic_amplicon>AATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACAKTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28540</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>40829</contig_pos>
        <strand></strand>
        <context>TTTGAAACAK[T/A]AATTTTTGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACAT</left_flank>
        <right_flank>AATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTGTAATTTCTGAAAAAAAATTGTTCAAGTATTTAAAGATTACTGTAGTTTTTGGATTCATTGTTATTTTTCATTGTTAATTTCGGGAAAAAAACTTATAAAAAATTTCTTGAATTACTGTAGTTTTGACTACGGTAGTTCAAAATAGTCTAAAATATCAACTTCTGATACTTATCGATCTATCAAGAATTTATTAGCATTTTTCAATTTTGGAAAAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATTTTTTGAAAAATTCTCTTTAAAAATTTTTCTGGATTACTGTAGTCTGGAGCACACTGTAATTTTTGTTTTCAGATTACTGTATTTTTCGACAACCAACCAAACTTTAAAGCAGCTACATTTCCTAAAAGTTTGATTTCCGAAAATTTTGAAACAGTAACTTTT</canonical>
            <polymorphic>ACTGTAATTTCTGAAAAAAAATTGTTCAAGTATTTAAAGATTACTGTAGTTTTTGGATTCATTGTTATTTTTCATTGTTAATTTCGGGAAAAAAACTTATAAAAAATTTCTTGAATTACTGTAGTTTTGACTACGGTAGTTCAAAATAGTCTAAAATATCAACTTCTGATACTTATCGATCTATCAAGAATTTATTAGCATTTTTCAATTTTGGAAAAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATWAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATTTTTTGAAAAATTCTCTTTAAAAATTTTTCTGGATTACTGTAGTCTGGAGCACACTGTAATTTTTGTTTTCAGATTACTGTATTTTTCGACAACCAACCAAACTTTAAAGCAGCTACATTTCCTAAAAGTTTGATTTCCGAAAATTTTGAAACAGTAACTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>277 167 144 140 87 58 49 44 34</canonical_bands>
                <polymorphic_bands>284 277 167 87 58 49 44 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGTGTGTTCAGCAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AACGAGAAAAAGAATGATTACAG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTT</canonical_amplicon>
		<polymorphic_amplicon>AATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATWAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28541</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>41011</contig_pos>
        <strand>+</strand>
        <context>AAACAGTAAA[A/C]TTTTTTTWAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAA</left_flank>
        <right_flank>TTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAAGAATTTATTAGCATTTTTCAATTTTGGAAAAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATTTTTTGAAAAATTCTCTTTAAAAATTTTTCTGGATTACTGTAGTCTGGAGCACACTGTAATTTTTGTTTTCAGATTACTGTATTTTTCGACAACCAACCAAACTTTAAAGCAGCTACATTTCCTAAAAGTTTGATTTCCGAAAATTTTGAAACAGTAACTTTTTTTTAATTTTGGAAAAAAATATATCTTTTTGTATTACTGTAGTTTGGGGATTACTGTTTTTTTCGATTACGGTAGTTAAGAAAGTGTCTATCTGTGTGTCTGTTTGCAGTAGTTTTTCAAAATTTTCAAAAAAAGATGGATTTTTTTTTTTGGCTTACTGTAGTTTTGAGACAACTGTAATT</canonical>
            <polymorphic>ATCAAGAATTTATTAGCATTTTTCAATTTTGGAAAAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAAMTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATTTTTTGAAAAATTCTCTTTAAAAATTTTTCTGGATTACTGTAGTCTGGAGCACACTGTAATTTTTGTTTTCAGATTACTGTATTTTTCGACAACCAACCAAACTTTAAAGCAGCTACATTTCCTAAAAGTTTGATTTCCGAAAATTTTGAAACAGTAACTTTTTTTTAATTTTGGAAAAAAATATATCTTTTTGTATTACTGTAGTTTGGGGATTACTGTTTTTTTCGATTACGGTAGTTAAGAAAGTGTCTATCTGTGTGTCTGTTTGCAGTAGTTTTTCAAAATTTTCAAAAAAAGATGGATTTTTTTTTTTGGCTTACTGTAGTTTTGAGACAACTGTAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>178 141 138 130 120 107 62 29 25 24 15 13 12 6</canonical_bands>
                <polymorphic_bands>178 141 138 130 120 107 62 29 27 25 24 13 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>136 116 107 84 70 58 55 45 36 30 28 28 25 18 18 15 14 13 13 13 12 12 12 11 11 10 6 4</canonical_bands>
                <polymorphic_bands>136 116 107 84 70 58 55 45 36 30 28 28 27 25 18 18 14 13 13 13 12 12 11 11 10 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAATCATTCTTTTTCTCGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGATTATTCGATATGACACTTTC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAA</canonical_amplicon>
		<polymorphic_amplicon>GTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAAMTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28542</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>41025</contig_pos>
        <strand>+</strand>
        <context>TTTTWAAATT[A/T]CGAGAAAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATT</left_flank>
        <right_flank>CGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCATTTTTCAATTTTGGAAAAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATTTTTTGAAAAATTCTCTTTAAAAATTTTTCTGGATTACTGTAGTCTGGAGCACACTGTAATTTTTGTTTTCAGATTACTGTATTTTTCGACAACCAACCAAACTTTAAAGCAGCTACATTTCCTAAAAGTTTGATTTCCGAAAATTTTGAAACAGTAACTTTTTTTTAATTTTGGAAAAAAATATATCTTTTTGTATTACTGTAGTTTGGGGATTACTGTTTTTTTCGATTACGGTAGTTAAGAAAGTGTCTATCTGTGTGTCTGTTTGCAGTAGTTTTTCAAAATTTTCAAAAAAAGATGGATTTTTTTTTTTGGCTTACTGTAGTTTTGAGACAACTGTAATTACTTTTTCTTGGCT</canonical>
            <polymorphic>AGCATTTTTCAATTTTGGAAAAATTTGAAACAGTAATTTTTCGAAAATTTCTTTTATTTTGGGTTACTGTAGTTTTTGATTGTTTACTGTATTTTTAGATACTTTTTTGAGTCTGTTTGAATGTGTGTTCAGCAAAAATCTATATATTTGAAAATTTTTTAAAAAATTACTGTGGTTTGGGGATCACTGTGACAATGACTACGGTAGTTCAAAATAGTCAAAAAAAAAAAAATCAATTTCTGATACTTATTGAGTAATCAACAATTTATTAGCATTTTTCAATTTTCGAAAATTTTGAAACATTAATTTTTGGAAAAAACTTTTTTTGGATTACTGTAGTTTCAAACATACTGTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTWCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAATAATTTATTAGCATTTTTCCATTTTTGAAAAAATTTGAAACAGTAATTTTTTGAAAAATTCTCTTTAAAAATTTTTCTGGATTACTGTAGTCTGGAGCACACTGTAATTTTTGTTTTCAGATTACTGTATTTTTCGACAACCAACCAAACTTTAAAGCAGCTACATTTCCTAAAAGTTTGATTTCCGAAAATTTTGAAACAGTAACTTTTTTTTAATTTTGGAAAAAAATATATCTTTTTGTATTACTGTAGTTTGGGGATTACTGTTTTTTTCGATTACGGTAGTTAAGAAAGTGTCTATCTGTGTGTCTGTTTGCAGTAGTTTTTCAAAATTTTCAAAAAAAGATGGATTTTTTTTTTTGGCTTACTGTAGTTTTGAGACAACTGTAATTACTTTTTCTTGGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>178 141 138 130 120 107 76 25 24 21 15 13 12</canonical_bands>
                <polymorphic_bands>178 142 141 138 120 107 76 25 24 21 15 13</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>245 177 145 139 132 83 42 37</canonical_bands>
                <polymorphic_bands>245 177 145 139 132 120 42</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>501 314 170 15</canonical_bands>
                <polymorphic_bands>671 314 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAATCATTCTTTTTCTCGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGATTATTCGATATGACACTTTC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTTCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAA</canonical_amplicon>
		<polymorphic_amplicon>GTAATCATTCTTTTTCTCGTTTTTGATATTACTGTACTGTTTGATACCGCAATAAAAAGGTCTTCAAGTATTTGTATGGATCAACAAAAATTAAAATATTGAAAAAGTTTTCGAAAAATTTTGAAACAGTAAATTTTTTTTAAAATTWCGAGAAAAACCAAAAACTTCTTCAGATTACTATAGTTTCAAGCATACTGTAATTATGAATACGGTTGTAAGAAAGTGTCATATCGAATAATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28545</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>46241</contig_pos>
        <strand></strand>
        <context>ATTCTTTAAA[G/A]AATTTTGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGAAACTCAAAAAAAATGTTTCCCATAAAAATTAGAATGAATTCTTTAAA</left_flank>
        <right_flank>AATTTTGAAACAGTAATTTATTCCCAAGAAAGAAATGATTGAATTTGGCA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGATTTGGCGGGAATTTGAAAATTTTGAAAAAGATTTGCTGTTTCAACTTTTTTCAAAATTCAGACTTTTTCAATTTTATTTGATTCACCTCTTTTTCTACAGTGTTTAAATATAGCAATTTTAAAATGTAGGGGGGTTTTCAGAATTTAAACATTTCGATTTTTATTTAATCAAAAAAAAAATAAATAAATGGAATCAATGATAACAAGAACCTATCAATTTTGAAATTTATAGGATTTGTTTTCAAAAAAATTTTTGAAACAGACAACTTTTTTGACAAATAAACTCTGAAAAATGAGCCCGAATTCGGCGGGAAATTCGAATTTTCGGCTGATTCTTGAGGTCAAAAGTCTTCAGGAAATTAGCTTTTTTCTTCAAATAGACAAAAAAGGGAAATTTGAAAACTTTCCTGTTTCAAAAAACTTTTATTTGGATTTTCAGATTTTTCGAAACTCAAAAAAAATGTTTCCCATAAAAATTAGAATGAATTCTTTAAAGAATTTTGAAACAGTAATTTATTCCCAAGAAAGAAATGATTGAATTTGGCATTTTCAATTCTCAGACAATTTTTGACCATAAAATTGGGAGTTTCGGTATCGGAAACCCCGAGAAAATGTAATTTCTCTGGGAAAATGGAAATTTTTATAATTTTTATAATTTTTTAAAAACAATGATTTTGAGATGTTAATTGAATTTTTTGATGACGTTTTGATTTTGAGAAAATTTTGAAACAGCAATTTTTTTTGAAATTTCTGATTTTTAGGTTCTCTGAAACATTAAAATCTAGAACCGAAACTTATTTTCTTCTTGAAAAAATTGAAATGATAGCAATTTTCAGAGCTTTTGTCATTGTCGAATTTTTCAAATTCTTAATTTTCTGGAATTTCTGAACTTCTTAATTTCTGAATTTCTGAATTTCTGGAATTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAT</canonical>
            <polymorphic>CAGATTTGGCGGGAATTTGAAAATTTTGAAAAAGATTTGCTGTTTCAACTTTTTTCAAAATTCAGACTTTTTCAATTTTATTTGATTCACCTCTTTTTCTACAGTGTTTAAATATAGCAATTTTAAAATGTAGGGGGGTTTTCAGAATTTAAACATTTCGATTTTTATTTAATCAAAAAAAAAATAAATAAATGGAATCAATGATAACAAGAACCTATCAATTTTGAAATTTATAGGATTTGTTTTCAAAAAAATTTTTGAAACAGACAACTTTTTTGACAAATAAACTCTGAAAAATGAGCCCGAATTCGGCGGGAAATTCGAATTTTCGGCTGATTCTTGAGGTCAAAAGTCTTCAGGAAATTAGCTTTTTTCTTCAAATAGACAAAAAAGGGAAATTTGAAAACTTTCCTGTTTCAAAAAACTTTTATTTGGATTTTCAGATTTTTCGAAACTCAAAAAAAATGTTTCCCATAAAAATTAGAATGAATTCTTTAAARAATTTTGAAACAGTAATTTATTCCCAAGAAAGAAATGATTGAATTTGGCATTTTCAATTCTCAGACAATTTTTGACCATAAAATTGGGAGTTTCGGTATCGGAAACCCCGAGAAAATGTAATTTCTCTGGGAAAATGGAAATTTTTATAATTTTTATAATTTTTTAAAAACAATGATTTTGAGATGTTAATTGAATTTTTTGATGACGTTTTGATTTTGAGAAAATTTTGAAACAGCAATTTTTTTTGAAATTTCTGATTTTTAGGTTCTCTGAAACATTAAAATCTAGAACCGAAACTTATTTTCTTCTTGAAAAAATTGAAATGATAGCAATTTTCAGAGCTTTTGTCATTGTCGAATTTTTCAAATTCTTAATTTTCTGGAATTTCTGAACTTCTTAATTTCTGAATTTCTGAATTTCTGGAATTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>108 98 92 87 82 73 54 53 41 37 30 26 25 24 17 13 12 12 11 9 9 9 8 8 8 8 8 8 8 8 8 6</canonical_bands>
                <polymorphic_bands>108 98 92 87 82 73 54 53 53 37 30 26 25 24 17 13 12 11 9 9 9 8 8 8 8 8 8 8 8 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTCTTCAGGAAATTAGCTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATACCGAAACTCCCAATTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGTCTTCAGGAAATTAGCTTTTTTCTTCAAATAGACAAAAAAGGGAAATTTGAAAACTTTCCTGTTTCAAAAAACTTTTATTTGGATTTTCAGATTTTTCGAAACTCAAAAAAAATGTTTCCCATAAAAATTAGAATGAATTCTTTAAAGAATTTTGAAACAGTAATTTATTCCCAAGAAAGAAATGATTGAATTTGGCATTTTCAATTCTCAGACAATTTTTGACCATAAAATTGGGAGTTTCGGTAT</canonical_amplicon>
		<polymorphic_amplicon>AAGTCTTCAGGAAATTAGCTTTTTTCTTCAAATAGACAAAAAAGGGAAATTTGAAAACTTTCCTGTTTCAAAAAACTTTTATTTGGATTTTCAGATTTTTCGAAACTCAAAAAAAATGTTTCCCATAAAAATTAGAATGAATTCTTTAAARAATTTTGAAACAGTAATTTATTCCCAAGAAAGAAATGATTGAATTTGGCATTTTCAATTCTCAGACAATTTTTGACCATAAAATTGGGAGTTTCGGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28546</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>46389</contig_pos>
        <strand></strand>
        <context>Gaaattttta[T/A]awtttttata</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATCGGAAACCCCGAGAAAATGTAATTTCTCTGGGAAAATGGAAATTTTTA</left_flank>
        <right_flank>AATTTTTATAATTTTTTAAAAACAATGATTTTGAGATGTTAATTGAATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAAACATTTCGATTTTTATTTAATCAAAAAAAAAATAAATAAATGGAATCAATGATAACAAGAACCTATCAATTTTGAAATTTATAGGATTTGTTTTCAAAAAAATTTTTGAAACAGACAACTTTTTTGACAAATAAACTCTGAAAAATGAGCCCGAATTCGGCGGGAAATTCGAATTTTCGGCTGATTCTTGAGGTCAAAAGTCTTCAGGAAATTAGCTTTTTTCTTCAAATAGACAAAAAAGGGAAATTTGAAAACTTTCCTGTTTCAAAAAACTTTTATTTGGATTTTCAGATTTTTCGAAACTCAAAAAAAATGTTTCCCATAAAAATTAGAATGAATTCTTTAAAGAATTTTGAAACAGTAATTTATTCCCAAGAAAGAAATGATTGAATTTGGCATTTTCAATTCTCAGACAATTTTTGACCATAAAATTGGGAGTTTCGGTATCGGAAACCCCGAGAAAATGTAATTTCTCTGGGAAAATGGAAATTTTTATAATTTTTATAATTTTTTAAAAACAATGATTTTGAGATGTTAATTGAATTTTTTGATGACGTTTTGATTTTGAGAAAATTTTGAAACAGCAATTTTTTTTGAAATTTCTGATTTTTAGGTTCTCTGAAACATTAAAATCTAGAACCGAAACTTATTTTCTTCTTGAAAAAATTGAAATGATAGCAATTTTCAGAGCTTTTGTCATTGTCGAATTTTTCAAATTCTTAATTTTCTGGAATTTCTGAACTTCTTAATTTCTGAATTTCTGAATTTCTGGAATTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCAATTTTCTGAATTTCTGCAATTTTCTGAATTTCTGCAATTTTCTGAATTTCTGCAATTTTCTGAATTTCTGCAATTTTCTGAATTTCTGCAATTTTCTGAATTTCTGCAA</canonical>
            <polymorphic>TTAAACATTTCGATTTTTATTTAATCAAAAAAAAAATAAATAAATGGAATCAATGATAACAAGAACCTATCAATTTTGAAATTTATAGGATTTGTTTTCAAAAAAATTTTTGAAACAGACAACTTTTTTGACAAATAAACTCTGAAAAATGAGCCCGAATTCGGCGGGAAATTCGAATTTTCGGCTGATTCTTGAGGTCAAAAGTCTTCAGGAAATTAGCTTTTTTCTTCAAATAGACAAAAAAGGGAAATTTGAAAACTTTCCTGTTTCAAAAAACTTTTATTTGGATTTTCAGATTTTTCGAAACTCAAAAAAAATGTTTCCCATAAAAATTAGAATGAATTCTTTAAAGAATTTTGAAACAGTAATTTATTCCCAAGAAAGAAATGATTGAATTTGGCATTTTCAATTCTCAGACAATTTTTGACCATAAAATTGGGAGTTTCGGTATCGGAAACCCCGAGAAAATGTAATTTCTCTGGGAAAATGGAAATTTTTAWAATTTTTATAATTTTTTAAAAACAATGATTTTGAGATGTTAATTGAATTTTTTGATGACGTTTTGATTTTGAGAAAATTTTGAAACAGCAATTTTTTTTGAAATTTCTGATTTTTAGGTTCTCTGAAACATTAAAATCTAGAACCGAAACTTATTTTCTTCTTGAAAAAATTGAAATGATAGCAATTTTCAGAGCTTTTGTCATTGTCGAATTTTTCAAATTCTTAATTTTCTGGAATTTCTGAACTTCTTAATTTCTGAATTTCTGAATTTCTGGAATTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCAATTTTCTGAATTTCTGCAATTTTCTGAATTTCTGCAATTTTCTGAATTTCTGCAATTTTCTGAATTTCTGCAATTTTCTGAATTTCTGCAATTTTCTGAATTTCTGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>499 492 9</canonical_bands>
                <polymorphic_bands>508 492</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCAGACAATTTTTGACCATA</pcr_primer_p1>
		<pcr_primer_p2>AAGAAGAAAATAAGTTTCGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TCTCAGACAATTTTTGACCATAAAATTGGGAGTTTCGGTATCGGAAACCCCGAGAAAATGTAATTTCTCTGGGAAAATGGAAATTTTTATAATTTTTATAATTTTTTAAAAACAATGATTTTGAGATGTTAATTGAATTTTTTGATGACGTTTTGATTTTGAGAAAATTTTGAAACAGCAATTTTTTTTGAAATTTCTGATTTTTAGGTTCTCTGAAACATTAAAATCTAGAACCGAAACTTATTTTCTTCTT</canonical_amplicon>
		<polymorphic_amplicon>TCTCAGACAATTTTTGACCATAAAATTGGGAGTTTCGGTATCGGAAACCCCGAGAAAATGTAATTTCTCTGGGAAAATGGAAATTTTTAWAATTTTTATAATTTTTTAAAAACAATGATTTTGAGATGTTAATTGAATTTTTTGATGACGTTTTGATTTTGAGAAAATTTTGAAACAGCAATTTTTTTTGAAATTTCTGATTTTTAGGTTCTCTGAAACATTAAAATCTAGAACCGAAACTTATTTTCTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28547</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>46391</contig_pos>
        <strand></strand>
        <context>aatttttawa[A/T]tttttataat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGGAAACCCCGAGAAAATGTAATTTCTCTGGGAAAATGGAAATTTTTATA</left_flank>
        <right_flank>TTTTTATAATTTTTTAAAAACAATGATTTTGAGATGTTAATTGAATTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACATTTCGATTTTTATTTAATCAAAAAAAAAATAAATAAATGGAATCAATGATAACAAGAACCTATCAATTTTGAAATTTATAGGATTTGTTTTCAAAAAAATTTTTGAAACAGACAACTTTTTTGACAAATAAACTCTGAAAAATGAGCCCGAATTCGGCGGGAAATTCGAATTTTCGGCTGATTCTTGAGGTCAAAAGTCTTCAGGAAATTAGCTTTTTTCTTCAAATAGACAAAAAAGGGAAATTTGAAAACTTTCCTGTTTCAAAAAACTTTTATTTGGATTTTCAGATTTTTCGAAACTCAAAAAAAATGTTTCCCATAAAAATTAGAATGAATTCTTTAAAGAATTTTGAAACAGTAATTTATTCCCAAGAAAGAAATGATTGAATTTGGCATTTTCAATTCTCAGACAATTTTTGACCATAAAATTGGGAGTTTCGGTATCGGAAACCCCGAGAAAATGTAATTTCTCTGGGAAAATGGAAATTTTTATAATTTTTATAATTTTTTAAAAACAATGATTTTGAGATGTTAATTGAATTTTTTGATGACGTTTTGATTTTGAGAAAATTTTGAAACAGCAATTTTTTTTGAAATTTCTGATTTTTAGGTTCTCTGAAACATTAAAATCTAGAACCGAAACTTATTTTCTTCTTGAAAAAATTGAAATGATAGCAATTTTCAGAGCTTTTGTCATTGTCGAATTTTTCAAATTCTTAATTTTCTGGAATTTCTGAACTTCTTAATTTCTGAATTTCTGAATTTCTGGAATTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCAATTTTCTGAATTTCTGCAATTTTCTGAATTTCTGCAATTTTCTGAATTTCTGCAATTTTCTGAATTTCTGCAATTTTCTGAATTTCTGCAATTTTCTGAATTTCTGCAATT</canonical>
            <polymorphic>AAACATTTCGATTTTTATTTAATCAAAAAAAAAATAAATAAATGGAATCAATGATAACAAGAACCTATCAATTTTGAAATTTATAGGATTTGTTTTCAAAAAAATTTTTGAAACAGACAACTTTTTTGACAAATAAACTCTGAAAAATGAGCCCGAATTCGGCGGGAAATTCGAATTTTCGGCTGATTCTTGAGGTCAAAAGTCTTCAGGAAATTAGCTTTTTTCTTCAAATAGACAAAAAAGGGAAATTTGAAAACTTTCCTGTTTCAAAAAACTTTTATTTGGATTTTCAGATTTTTCGAAACTCAAAAAAAATGTTTCCCATAAAAATTAGAATGAATTCTTTAAAGAATTTTGAAACAGTAATTTATTCCCAAGAAAGAAATGATTGAATTTGGCATTTTCAATTCTCAGACAATTTTTGACCATAAAATTGGGAGTTTCGGTATCGGAAACCCCGAGAAAATGTAATTTCTCTGGGAAAATGGAAATTTTTATAWTTTTTATAATTTTTTAAAAACAATGATTTTGAGATGTTAATTGAATTTTTTGATGACGTTTTGATTTTGAGAAAATTTTGAAACAGCAATTTTTTTTGAAATTTCTGATTTTTAGGTTCTCTGAAACATTAAAATCTAGAACCGAAACTTATTTTCTTCTTGAAAAAATTGAAATGATAGCAATTTTCAGAGCTTTTGTCATTGTCGAATTTTTCAAATTCTTAATTTTCTGGAATTTCTGAACTTCTTAATTTCTGAATTTCTGAATTTCTGGAATTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCAATTTTCTGAATTTCTGCAATTTTCTGAATTTCTGCAATTTTCTGAATTTCTGCAATTTTCTGAATTTCTGCAATTTTCTGAATTTCTGCAATTTTCTGAATTTCTGCAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>497 494 9</canonical_bands>
                <polymorphic_bands>506 494</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>82 69 67 53 38 38 35 31 30 27 26 25 20 16 15 15 14 14 14 12 12 12 11 10 10 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 6 5 4</canonical_bands>
                <polymorphic_bands>82 69 67 53 38 38 35 31 30 27 26 25 20 18 16 15 15 14 14 14 12 12 12 11 10 10 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 6 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCAGACAATTTTTGACCATA</pcr_primer_p1>
		<pcr_primer_p2>AAGAAGAAAATAAGTTTCGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TCTCAGACAATTTTTGACCATAAAATTGGGAGTTTCGGTATCGGAAACCCCGAGAAAATGTAATTTCTCTGGGAAAATGGAAATTTTTATAATTTTTATAATTTTTTAAAAACAATGATTTTGAGATGTTAATTGAATTTTTTGATGACGTTTTGATTTTGAGAAAATTTTGAAACAGCAATTTTTTTTGAAATTTCTGATTTTTAGGTTCTCTGAAACATTAAAATCTAGAACCGAAACTTATTTTCTTCTT</canonical_amplicon>
		<polymorphic_amplicon>TCTCAGACAATTTTTGACCATAAAATTGGGAGTTTCGGTATCGGAAACCCCGAGAAAATGTAATTTCTCTGGGAAAATGGAAATTTTTATAWTTTTTATAATTTTTTAAAAACAATGATTTTGAGATGTTAATTGAATTTTTTGATGACGTTTTGATTTTGAGAAAATTTTGAAACAGCAATTTTTTTTGAAATTTCTGATTTTTAGGTTCTCTGAAACATTAAAATCTAGAACCGAAACTTATTTTCTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28548</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>52845</contig_pos>
        <strand></strand>
        <context>TAGAATttta[A/G]aattttagaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCCTTTAAAGTTAGCGCGCCTTACTGCATTTTAGAATTTTAGAATTTTA</left_flank>
        <right_flank>AATTTTAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTACGCGGACAGTTTCAATGTGTTATTATTAGCCATTAGAATGGAAATGAGAAAATGGAAATGGAGAAGAGCGAGAGAGTATTAGCGATCAAGAGACGCAGAGAAATACAAAAAAAGTGGTCAGGGTTGTCATTGAATCACACCTTTTTCCTTAATTTGACCTAGTTTTTGGGCAATTCAGGGATTTATTGTAGTACTGAGAAAGTAAGAGGAGTCGGAGACGCAGAGAAACGAGGCACTCTAGCTTCTCTGCGTCTCTCACCGCCTCTACGGTGCTTATCGCTGGCGAGCCGCGCGGAGCCAGTAGGCTACGTTTAAAGCCGCATATCTCAAAAACTACGGTAGCTATCCAGATTTTGTCAATTACAAAAATGTGTGAAATTTTATGCTGAGCAATTTTGCAGTTGATAACTTTTTGAAAGCTATTTTAGTTTTTTGAGATATGCGCCTTTAAAGTTAGCGCGCCTTACTGCATTTTAGAATTTTAGAATTTTAAAATTTTAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAACTTCAGATTTTTTGAATT</canonical>
            <polymorphic>TTTTTTACGCGGACAGTTTCAATGTGTTATTATTAGCCATTAGAATGGAAATGAGAAAATGGAAATGGAGAAGAGCGAGAGAGTATTAGCGATCAAGAGACGCAGAGAAATACAAAAAAAGTGGTCAGGGTTGTCATTGAATCACACCTTTTTCCTTAATTTGACCTAGTTTTTGGGCAATTCAGGGATTTATTGTAGTACTGAGAAAGTAAGAGGAGTCGGAGACGCAGAGAAACGAGGCACTCTAGCTTCTCTGCGTCTCTCACCGCCTCTACGGTGCTTATCGCTGGCGAGCCGCGCGGAGCCAGTAGGCTACGTTTAAAGCCGCATATCTCAAAAACTACGGTAGCTATCCAGATTTTGTCAATTACAAAAATGTGTGAAATTTTATGCTGAGCAATTTTGCAGTTGATAACTTTTTGAAAGCTATTTTAGTTTTTTGAGATATGCGCCTTTAAAGTTAGCGCGCCTTACTGCATTTTAGAATTTTAGAATTTTARAATTTTAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAACTTCAGATTTTTTGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>383 101 36 16 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>383 101 36 16 16 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 320 136 42</canonical_bands>
                <polymorphic_bands>544 320 136</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>410 163 156 136 42 29 16 16 16 16</canonical_bands>
                <polymorphic_bands>452 163 156 136 29 16 16 16 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGATTTATTGTAGTACTGAGAAAG</pcr_primer_p1>
		<pcr_primer_p2>GCGTCTCTCACCTTAAAATTAC</pcr_primer_p2>
		<pcr_amplicon_size>961</pcr_amplicon_size>
		<canonical_amplicon>GGGATTTATTGTAGTACTGAGAAAGTAAGAGGAGTCGGAGACGCAGAGAAACGAGGCACTCTAGCTTCTCTGCGTCTCTCACCGCCTCTACGGTGCTTATCGCTGGCGAGCCGCGCGGAGCCAGTAGGCTACGTTTAAAGCCGCATATCTCAAAAACTACGGTAGCTATCCAGATTTTGTCAATTACAAAAATGTGTGAAATTTTATGCTGAGCAATTTTGCAGTTGATAACTTTTTGAAAGCTATTTTAGTTTTTTGAGATATGCGCCTTTAAAGTTAGCGCGCCTTACTGCATTTTAGAATTTTAGAATTTTAAAATTTTAGAATTTCAGAATTT</canonical_amplicon>
		<polymorphic_amplicon>GGGATTTATTGTAGTACTGAGAAAGTAAGAGGAGTCGGAGACGCAGAGAAACGAGGCACTCTAGCTTCTCTGCGTCTCTCACCGCCTCTACGGTGCTTATCGCTGGCGAGCCGCGCGGAGCCAGTAGGCTACGTTTAAAGCCGCATATCTCAAAAACTACGGTAGCTATCCAGATTTTGTCAATTACAAAAATGTGTGAAATTTTATGCTGAGCAATTTTGCAGTTGATAACTTTTTGAAAGCTATTTTAGTTTTTTGAGATATGCGCCTTTAAAGTTAGCGCGCCTTACTGCATTTTAGAATTTTAGAATTTTARAATTTTAGAATTTCAGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28549</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>52859</contig_pos>
        <strand></strand>
        <context>tttagaattt[C/T]agaattttag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCGCGCCTTACTGCATTTTAGAATTTTAGAATTTTAAAATTTTAGAATTT</left_flank>
        <right_flank>AGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTTCAATGTGTTATTATTAGCCATTAGAATGGAAATGAGAAAATGGAAATGGAGAAGAGCGAGAGAGTATTAGCGATCAAGAGACGCAGAGAAATACAAAAAAAGTGGTCAGGGTTGTCATTGAATCACACCTTTTTCCTTAATTTGACCTAGTTTTTGGGCAATTCAGGGATTTATTGTAGTACTGAGAAAGTAAGAGGAGTCGGAGACGCAGAGAAACGAGGCACTCTAGCTTCTCTGCGTCTCTCACCGCCTCTACGGTGCTTATCGCTGGCGAGCCGCGCGGAGCCAGTAGGCTACGTTTAAAGCCGCATATCTCAAAAACTACGGTAGCTATCCAGATTTTGTCAATTACAAAAATGTGTGAAATTTTATGCTGAGCAATTTTGCAGTTGATAACTTTTTGAAAGCTATTTTAGTTTTTTGAGATATGCGCCTTTAAAGTTAGCGCGCCTTACTGCATTTTAGAATTTTAGAATTTTAAAATTTTAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAACTTCAGATTTTTTGAATTTTAGATTTTTCGAA</canonical>
            <polymorphic>AGTTTCAATGTGTTATTATTAGCCATTAGAATGGAAATGAGAAAATGGAAATGGAGAAGAGCGAGAGAGTATTAGCGATCAAGAGACGCAGAGAAATACAAAAAAAGTGGTCAGGGTTGTCATTGAATCACACCTTTTTCCTTAATTTGACCTAGTTTTTGGGCAATTCAGGGATTTATTGTAGTACTGAGAAAGTAAGAGGAGTCGGAGACGCAGAGAAACGAGGCACTCTAGCTTCTCTGCGTCTCTCACCGCCTCTACGGTGCTTATCGCTGGCGAGCCGCGCGGAGCCAGTAGGCTACGTTTAAAGCCGCATATCTCAAAAACTACGGTAGCTATCCAGATTTTGTCAATTACAAAAATGTGTGAAATTTTATGCTGAGCAATTTTGCAGTTGATAACTTTTTGAAAGCTATTTTAGTTTTTTGAGATATGCGCCTTTAAAGTTAGCGCGCCTTACTGCATTTTAGAATTTTAGAATTTTAAAATTTTAGAATTTYAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAACTTCAGATTTTTTGAATTTTAGATTTTTCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>296 294 207 176 27</canonical_bands>
                <polymorphic_bands>470 296 207 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGATTTATTGTAGTACTGAGAAAG</pcr_primer_p1>
		<pcr_primer_p2>GCGTCTCTCACCTTAAAATTAC</pcr_primer_p2>
		<pcr_amplicon_size>961</pcr_amplicon_size>
		<canonical_amplicon>GGGATTTATTGTAGTACTGAGAAAGTAAGAGGAGTCGGAGACGCAGAGAAACGAGGCACTCTAGCTTCTCTGCGTCTCTCACCGCCTCTACGGTGCTTATCGCTGGCGAGCCGCGCGGAGCCAGTAGGCTACGTTTAAAGCCGCATATCTCAAAAACTACGGTAGCTATCCAGATTTTGTCAATTACAAAAATGTGTGAAATTTTATGCTGAGCAATTTTGCAGTTGATAACTTTTTGAAAGCTATTTTAGTTTTTTGAGATATGCGCCTTTAAAGTTAGCGCGCCTTACTGCATTTTAGAATTTTAGAATTTTAAAATTTTAGAATTTCAGAATTTTAGAATTTTAGAAT</canonical_amplicon>
		<polymorphic_amplicon>GGGATTTATTGTAGTACTGAGAAAGTAAGAGGAGTCGGAGACGCAGAGAAACGAGGCACTCTAGCTTCTCTGCGTCTCTCACCGCCTCTACGGTGCTTATCGCTGGCGAGCCGCGCGGAGCCAGTAGGCTACGTTTAAAGCCGCATATCTCAAAAACTACGGTAGCTATCCAGATTTTGTCAATTACAAAAATGTGTGAAATTTTATGCTGAGCAATTTTGCAGTTGATAACTTTTTGAAAGCTATTTTAGTTTTTTGAGATATGCGCCTTTAAAGTTAGCGCGCCTTACTGCATTTTAGAATTTTAGAATTTTAAAATTTTAGAATTTYAGAATTTTAGAATTTTAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28550</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>52930</contig_pos>
        <strand></strand>
        <context>ttttagaatt[C/T]tagaatttta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATT</left_flank>
        <right_flank>TAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAGCGATCAAGAGACGCAGAGAAATACAAAAAAAGTGGTCAGGGTTGTCATTGAATCACACCTTTTTCCTTAATTTGACCTAGTTTTTGGGCAATTCAGGGATTTATTGTAGTACTGAGAAAGTAAGAGGAGTCGGAGACGCAGAGAAACGAGGCACTCTAGCTTCTCTGCGTCTCTCACCGCCTCTACGGTGCTTATCGCTGGCGAGCCGCGCGGAGCCAGTAGGCTACGTTTAAAGCCGCATATCTCAAAAACTACGGTAGCTATCCAGATTTTGTCAATTACAAAAATGTGTGAAATTTTATGCTGAGCAATTTTGCAGTTGATAACTTTTTGAAAGCTATTTTAGTTTTTTGAGATATGCGCCTTTAAAGTTAGCGCGCCTTACTGCATTTTAGAATTTTAGAATTTTAAAATTTTAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAACTTCAGATTTTTTGAATTTTAGATTTTTCGAATTTTTGAATTTTCAAAAACAAAACAATTTTTGAAAAATTTCCAGTCAATTAAATATAATTTTTTTGTTTTT</canonical>
            <polymorphic>TTAGCGATCAAGAGACGCAGAGAAATACAAAAAAAGTGGTCAGGGTTGTCATTGAATCACACCTTTTTCCTTAATTTGACCTAGTTTTTGGGCAATTCAGGGATTTATTGTAGTACTGAGAAAGTAAGAGGAGTCGGAGACGCAGAGAAACGAGGCACTCTAGCTTCTCTGCGTCTCTCACCGCCTCTACGGTGCTTATCGCTGGCGAGCCGCGCGGAGCCAGTAGGCTACGTTTAAAGCCGCATATCTCAAAAACTACGGTAGCTATCCAGATTTTGTCAATTACAAAAATGTGTGAAATTTTATGCTGAGCAATTTTGCAGTTGATAACTTTTTGAAAGCTATTTTAGTTTTTTGAGATATGCGCCTTTAAAGTTAGCGCGCCTTACTGCATTTTAGAATTTTAGAATTTTAAAATTTTAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTYTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAACTTCAGATTTTTTGAATTTTAGATTTTTCGAATTTTTGAATTTTCAAAAACAAAACAATTTTTGAAAAATTTCCAGTCAATTAAATATAATTTTTTTGTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>298 101 36 32 29 16 16 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>298 101 36 32 29 16 16 16 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>340 228 192 81 79 40 40</canonical_bands>
                <polymorphic_bands>380 228 192 81 79 40</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>495 233 192 40 40</canonical_bands>
                <polymorphic_bands>535 233 192 40</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>260 231 228 192 40 40 9</canonical_bands>
                <polymorphic_bands>271 260 228 192 40 9</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 229 192 40 40</canonical_bands>
                <polymorphic_bands>539 229 192 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGATTTATTGTAGTACTGAGAAAG</pcr_primer_p1>
		<pcr_primer_p2>GCGTCTCTCACCTTAAAATTAC</pcr_primer_p2>
		<pcr_amplicon_size>961</pcr_amplicon_size>
		<canonical_amplicon>GGGATTTATTGTAGTACTGAGAAAGTAAGAGGAGTCGGAGACGCAGAGAAACGAGGCACTCTAGCTTCTCTGCGTCTCTCACCGCCTCTACGGTGCTTATCGCTGGCGAGCCGCGCGGAGCCAGTAGGCTACGTTTAAAGCCGCATATCTCAAAAACTACGGTAGCTATCCAGATTTTGTCAATTACAAAAATGTGTGAAATTTTATGCTGAGCAATTTTGCAGTTGATAACTTTTTGAAAGCTATTTTAGTTTTTTGAGATATGCGCCTTTAAAGTTAGCGCGCCTTACTGCATTTTAGAATTTTAGAATTTTAAAATTTTAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAA</canonical_amplicon>
		<polymorphic_amplicon>GGGATTTATTGTAGTACTGAGAAAGTAAGAGGAGTCGGAGACGCAGAGAAACGAGGCACTCTAGCTTCTCTGCGTCTCTCACCGCCTCTACGGTGCTTATCGCTGGCGAGCCGCGCGGAGCCAGTAGGCTACGTTTAAAGCCGCATATCTCAAAAACTACGGTAGCTATCCAGATTTTGTCAATTACAAAAATGTGTGAAATTTTATGCTGAGCAATTTTGCAGTTGATAACTTTTTGAAAGCTATTTTAGTTTTTTGAGATATGCGCCTTTAAAGTTAGCGCGCCTTACTGCATTTTAGAATTTTAGAATTTTAAAATTTTAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTYTAGAATTTTAGAATTTTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28551</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>52970</contig_pos>
        <strand></strand>
        <context>Ttttagaatt[C/T]tagaatttta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATT</left_flank>
        <right_flank>TAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGGGTTGTCATTGAATCACACCTTTTTCCTTAATTTGACCTAGTTTTTGGGCAATTCAGGGATTTATTGTAGTACTGAGAAAGTAAGAGGAGTCGGAGACGCAGAGAAACGAGGCACTCTAGCTTCTCTGCGTCTCTCACCGCCTCTACGGTGCTTATCGCTGGCGAGCCGCGCGGAGCCAGTAGGCTACGTTTAAAGCCGCATATCTCAAAAACTACGGTAGCTATCCAGATTTTGTCAATTACAAAAATGTGTGAAATTTTATGCTGAGCAATTTTGCAGTTGATAACTTTTTGAAAGCTATTTTAGTTTTTTGAGATATGCGCCTTTAAAGTTAGCGCGCCTTACTGCATTTTAGAATTTTAGAATTTTAAAATTTTAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAACTTCAGATTTTTTGAATTTTAGATTTTTCGAATTTTTGAATTTTCAAAAACAAAACAATTTTTGAAAAATTTCCAGTCAATTAAATATAATTTTTTTGTTTTTTCAACAAAAATGTCGAAAAAACGGTCAATTTTAAAACTGT</canonical>
            <polymorphic>CAGGGTTGTCATTGAATCACACCTTTTTCCTTAATTTGACCTAGTTTTTGGGCAATTCAGGGATTTATTGTAGTACTGAGAAAGTAAGAGGAGTCGGAGACGCAGAGAAACGAGGCACTCTAGCTTCTCTGCGTCTCTCACCGCCTCTACGGTGCTTATCGCTGGCGAGCCGCGCGGAGCCAGTAGGCTACGTTTAAAGCCGCATATCTCAAAAACTACGGTAGCTATCCAGATTTTGTCAATTACAAAAATGTGTGAAATTTTATGCTGAGCAATTTTGCAGTTGATAACTTTTTGAAAGCTATTTTAGTTTTTTGAGATATGCGCCTTTAAAGTTAGCGCGCCTTACTGCATTTTAGAATTTTAGAATTTTAAAATTTTAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTYTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAACTTCAGATTTTTTGAATTTTAGATTTTTCGAATTTTTGAATTTTCAAAAACAAAACAATTTTTGAAAAATTTCCAGTCAATTAAATATAATTTTTTTGTTTTTTCAACAAAAATGTCGAAAAAACGGTCAATTTTAAAACTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>258 101 76 32 29 16 16 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>258 101 76 32 29 16 16 16 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>340 268 192 79 41 40 40</canonical_bands>
                <polymorphic_bands>380 268 192 79 41 40</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>455 273 192 40 40</canonical_bands>
                <polymorphic_bands>495 273 192 40</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>268 231 229 192 40 40</canonical_bands>
                <polymorphic_bands>271 268 229 192 40</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>459 269 192 40 40</canonical_bands>
                <polymorphic_bands>499 269 192 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGATTTATTGTAGTACTGAGAAAG</pcr_primer_p1>
		<pcr_primer_p2>GCGTCTCTCACCTTAAAATTAC</pcr_primer_p2>
		<pcr_amplicon_size>961</pcr_amplicon_size>
		<canonical_amplicon>GGGATTTATTGTAGTACTGAGAAAGTAAGAGGAGTCGGAGACGCAGAGAAACGAGGCACTCTAGCTTCTCTGCGTCTCTCACCGCCTCTACGGTGCTTATCGCTGGCGAGCCGCGCGGAGCCAGTAGGCTACGTTTAAAGCCGCATATCTCAAAAACTACGGTAGCTATCCAGATTTTGTCAATTACAAAAATGTGTGAAATTTTATGCTGAGCAATTTTGCAGTTGATAACTTTTTGAAAGCTATTTTAGTTTTTTGAGATATGCGCCTTTAAAGTTAGCGCGCCTTACTGCATTTTAGAATTTTAGAATTTTAAAATTTTAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTYTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAA</canonical_amplicon>
		<polymorphic_amplicon>GGGATTTATTGTAGTACTGAGAAAGTAAGAGGAGTCGGAGACGCAGAGAAACGAGGCACTCTAGCTTCTCTGCGTCTCTCACCGCCTCTACGGTGCTTATCGCTGGCGAGCCGCGCGGAGCCAGTAGGCTACGTTTAAAGCCGCATATCTCAAAAACTACGGTAGCTATCCAGATTTTGTCAATTACAAAAATGTGTGAAATTTTATGCTGAGCAATTTTGCAGTTGATAACTTTTTGAAAGCTATTTTAGTTTTTTGAGATATGCGCCTTTAAAGTTAGCGCGCCTTACTGCATTTTAGAATTTTAGAATTTTAAAATTTTAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTYTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28552</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>53035</contig_pos>
        <strand></strand>
        <context>tttagaattt[C/T]agaattttag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTT</left_flank>
        <right_flank>AGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTGTAGTACTGAGAAAGTAAGAGGAGTCGGAGACGCAGAGAAACGAGGCACTCTAGCTTCTCTGCGTCTCTCACCGCCTCTACGGTGCTTATCGCTGGCGAGCCGCGCGGAGCCAGTAGGCTACGTTTAAAGCCGCATATCTCAAAAACTACGGTAGCTATCCAGATTTTGTCAATTACAAAAATGTGTGAAATTTTATGCTGAGCAATTTTGCAGTTGATAACTTTTTGAAAGCTATTTTAGTTTTTTGAGATATGCGCCTTTAAAGTTAGCGCGCCTTACTGCATTTTAGAATTTTAGAATTTTAAAATTTTAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAACTTCAGATTTTTTGAATTTTAGATTTTTCGAATTTTTGAATTTTCAAAAACAAAACAATTTTTGAAAAATTTCCAGTCAATTAAATATAATTTTTTTGTTTTTTCAACAAAAATGTCGAAAAAACGGTCAATTTTAAAACTGTAATTTTAAGGTGAGAGACGCAGACAAACGAGAGAGTATGAGAAATGAAGAGAGTGGTTAGAGAAA</canonical>
            <polymorphic>TATTGTAGTACTGAGAAAGTAAGAGGAGTCGGAGACGCAGAGAAACGAGGCACTCTAGCTTCTCTGCGTCTCTCACCGCCTCTACGGTGCTTATCGCTGGCGAGCCGCGCGGAGCCAGTAGGCTACGTTTAAAGCCGCATATCTCAAAAACTACGGTAGCTATCCAGATTTTGTCAATTACAAAAATGTGTGAAATTTTATGCTGAGCAATTTTGCAGTTGATAACTTTTTGAAAGCTATTTTAGTTTTTTGAGATATGCGCCTTTAAAGTTAGCGCGCCTTACTGCATTTTAGAATTTTAGAATTTTAAAATTTTAGAATTTYAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAACTTCAGATTTTTTGAATTTTAGATTTTTCGAATTTTTGAATTTTCAAAAACAAAACAATTTTTGAAAAATTTCCAGTCAATTAAATATAATTTTTTTGTTTTTTCAACAAAAATGTCGAAAAAACGGTCAATTTTAAAACTGTAATTTTAAGGTGAGAGACGCAGACAAACGAGAGAGTATGAGAAATGAAGAGAGTGGTTAGAGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>296 294 203 176 31</canonical_bands>
                <polymorphic_bands>470 296 203 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGATTTATTGTAGTACTGAGAAAG</pcr_primer_p1>
		<pcr_primer_p2>GCGTCTCTCACCTTAAAATTAC</pcr_primer_p2>
		<pcr_amplicon_size>961</pcr_amplicon_size>
		<canonical_amplicon>TCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAACTTCAGATTTTTTGAATTTTAGATTTTTCGAATTTTTGAATTTTCAAAAACAAAACAATTTTTGAAAAATTTCCAGTCAATTAAATATAATTTTTTTGTTTTTTCAACAAAAATGTCGAAAAAACGGTCAATTTTAAAACTGTAATTTTAAGGTGAGAGACGC</canonical_amplicon>
		<polymorphic_amplicon>TCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTCTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAATTTGTTAATTTTAGAACTTCAGATTTTTTGAATTTTAGATTTTTCGAATTTTTGAATTTTCAAAAACAAAACAATTTTTGAAAAATTTCCAGTCAATTAAATATAATTTTTTTGTTTTTTCAACAAAAATGTCGAAAAAACGGTCAATTTTAAAACTGTAATTTTAAGGTGAGAGACGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28553</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>56139</contig_pos>
        <strand>+</strand>
        <context>CCCTAAAAAA[A/G]GACCCAATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATTCTCAAATTTTCAGGAAACAAGAAAGAATCTTGGTCCCTAAAAAA</left_flank>
        <right_flank>GACCCAATTCTCTCATTTCCATTTTATGGCTCTCTTTGTTTCCTCAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGGGATTTACGATTTTATGGAAATCGGGAAAATATAATGGAGAAAAAGGAATTATATATTCAGAAATTGGATCTTAAATTTGTCTGGAACACTTTTTTTTGGATTTTCAAAACTTCAAAAAATTATTGAAAAAAATCTGAATTTCAGAGTTTCTGAAAACCGAGTATCTCCACAATTAGAAATTTTTGAATTCTTGAGAATTTCAAAAATTTTGGAAACAGTAAAAAAATCCCTGATAGTGAAGTTAAATTTTTTTAATATATCAAAAAAAAATCCTAGGAAGTCCAAAAGTTATGGAATCGTAGGAATTTCAGAAATAGAGATTTAAAAAATACGAAAAATCGTATTTTTCGATTTTCTGATTTTTAAACTATCTTTAAAAATAGAAATTCTGTTAAAACATTTTTGGAAACTTGATATTTTTGAAAAAAGTTTTCTAGAAATCTCAAAATTCTCAAATTTTCAGGAAACAAGAAAGAATCTTGGTCCCTAAAAAAAGACCCAATTCTCTCATTTCCATTTTATGGCTCTCTTTGTTTCCTCAATTTGTAATTGAGACTCTTTTTTGTTGGGGATTTTTTTTGGTTTTGAAATTAGAGAAGAAAATTCTGGAGAACTTTTTTTTCAAAATTTGAAAAAAAATTACTGTTTCAGAAATAATTGAAACACGGAAAATTGTGAAGTTGTCAGTTTGAAAAGCCATAAATTTGAATACTCCAAAAATTCAGAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCCAAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTAAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAAT</canonical>
            <polymorphic>AATGGGATTTACGATTTTATGGAAATCGGGAAAATATAATGGAGAAAAAGGAATTATATATTCAGAAATTGGATCTTAAATTTGTCTGGAACACTTTTTTTTGGATTTTCAAAACTTCAAAAAATTATTGAAAAAAATCTGAATTTCAGAGTTTCTGAAAACCGAGTATCTCCACAATTAGAAATTTTTGAATTCTTGAGAATTTCAAAAATTTTGGAAACAGTAAAAAAATCCCTGATAGTGAAGTTAAATTTTTTTAATATATCAAAAAAAAATCCTAGGAAGTCCAAAAGTTATGGAATCGTAGGAATTTCAGAAATAGAGATTTAAAAAATACGAAAAATCGTATTTTTCGATTTTCTGATTTTTAAACTATCTTTAAAAATAGAAATTCTGTTAAAACATTTTTGGAAACTTGATATTTTTGAAAAAAGTTTTCTAGAAATCTCAAAATTCTCAAATTTTCAGGAAACAAGAAAGAATCTTGGTCCCTAAAAAARGACCCAATTCTCTCATTTCCATTTTATGGCTCTCTTTGTTTCCTCAATTTGTAATTGAGACTCTTTTTTGTTGGGGATTTTTTTTGGTTTTGAAATTAGAGAAGAAAATTCTGGAGAACTTTTTTTTCAAAATTTGAAAAAAAATTACTGTTTCAGAAATAATTGAAACACGGAAAATTGTGAAGTTGTCAGTTTGAAAAGCCATAAATTTGAATACTCCAAAAATTCAGAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCCAAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTAAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGTTAAAACATTTTTGGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTCTCCAGAATTTTCTTCTCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>TCTGTTAAAACATTTTTGGAAACTTGATATTTTTGAAAAAAGTTTTCTAGAAATCTCAAAATTCTCAAATTTTCAGGAAACAAGAAAGAATCTTGGTCCCTAAAAAAAGACCCAATTCTCTCATTTCCATTTTATGGCTCTCTTTGTTTCCTCAATTTGTAATTGAGACTCTTTTTTGTTGGGGATTTTTTTTGGTTTTGAAATTAGAGAAGAAAATTCTGGAGAA</canonical_amplicon>
		<polymorphic_amplicon>TCTGTTAAAACATTTTTGGAAACTTGATATTTTTGAAAAAAGTTTTCTAGAAATCTCAAAATTCTCAAATTTTCAGGAAACAAGAAAGAATCTTGGTCCCTAAAAAARGACCCAATTCTCTCATTTCCATTTTATGGCTCTCTTTGTTTCCTCAATTTGTAATTGAGACTCTTTTTTGTTGGGGATTTTTTTTGGTTTTGAAATTAGAGAAGAAAATTCTGGAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28554</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>56154</contig_pos>
        <strand>+</strand>
        <context>CAATTCTCTC[C/T]TTTCCATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGGAAACAAGAAAGAATCTTGGTCCCTAAAAAAAGACCCAATTCTCTC</left_flank>
        <right_flank>TTTCCATTTTATGGCTCTCTTTGTTTCCTCAATTTGTAATTGAGACTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATGGAAATCGGGAAAATATAATGGAGAAAAAGGAATTATATATTCAGAAATTGGATCTTAAATTTGTCTGGAACACTTTTTTTTGGATTTTCAAAACTTCAAAAAATTATTGAAAAAAATCTGAATTTCAGAGTTTCTGAAAACCGAGTATCTCCACAATTAGAAATTTTTGAATTCTTGAGAATTTCAAAAATTTTGGAAACAGTAAAAAAATCCCTGATAGTGAAGTTAAATTTTTTTAATATATCAAAAAAAAATCCTAGGAAGTCCAAAAGTTATGGAATCGTAGGAATTTCAGAAATAGAGATTTAAAAAATACGAAAAATCGTATTTTTCGATTTTCTGATTTTTAAACTATCTTTAAAAATAGAAATTCTGTTAAAACATTTTTGGAAACTTGATATTTTTGAAAAAAGTTTTCTAGAAATCTCAAAATTCTCAAATTTTCAGGAAACAAGAAAGAATCTTGGTCCCTAAAAAAAGACCCAATTCTCTCATTTCCATTTTATGGCTCTCTTTGTTTCCTCAATTTGTAATTGAGACTCTTTTTTGTTGGGGATTTTTTTTGGTTTTGAAATTAGAGAAGAAAATTCTGGAGAACTTTTTTTTCAAAATTTGAAAAAAAATTACTGTTTCAGAAATAATTGAAACACGGAAAATTGTGAAGTTGTCAGTTTGAAAAGCCATAAATTTGAATACTCCAAAAATTCAGAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCCAAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTAAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTAAGAAA</canonical>
            <polymorphic>TTTATGGAAATCGGGAAAATATAATGGAGAAAAAGGAATTATATATTCAGAAATTGGATCTTAAATTTGTCTGGAACACTTTTTTTTGGATTTTCAAAACTTCAAAAAATTATTGAAAAAAATCTGAATTTCAGAGTTTCTGAAAACCGAGTATCTCCACAATTAGAAATTTTTGAATTCTTGAGAATTTCAAAAATTTTGGAAACAGTAAAAAAATCCCTGATAGTGAAGTTAAATTTTTTTAATATATCAAAAAAAAATCCTAGGAAGTCCAAAAGTTATGGAATCGTAGGAATTTCAGAAATAGAGATTTAAAAAATACGAAAAATCGTATTTTTCGATTTTCTGATTTTTAAACTATCTTTAAAAATAGAAATTCTGTTAAAACATTTTTGGAAACTTGATATTTTTGAAAAAAGTTTTCTAGAAATCTCAAAATTCTCAAATTTTCAGGAAACAAGAAAGAATCTTGGTCCCTAAAAAAAGACCCAATTCTCTCYTTTCCATTTTATGGCTCTCTTTGTTTCCTCAATTTGTAATTGAGACTCTTTTTTGTTGGGGATTTTTTTTGGTTTTGAAATTAGAGAAGAAAATTCTGGAGAACTTTTTTTTCAAAATTTGAAAAAAAATTACTGTTTCAGAAATAATTGAAACACGGAAAATTGTGAAGTTGTCAGTTTGAAAAGCCATAAATTTGAATACTCCAAAAATTCAGAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCCAAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTAAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTAAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCAGGAAACAAGAAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>AAACTGACAACTTCACAATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCAGGAAACAAGAAAGAATCTTGGTCCCTAAAAAAAGACCCAATTCTCTCATTTCCATTTTATGGCTCTCTTTGTTTCCTCAATTTGTAATTGAGACTCTTTTTTGTTGGGGATTTTTTTTGGTTTTGAAATTAGAGAAGAAAATTCTGGAGAACTTTTTTTTCAAAATTTGAAAAAAAATTACTGTTTCAGAAATAATTGAAACACGGAAAATTGTGAAGTTGTCAGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCAGGAAACAAGAAAGAATCTTGGTCCCTAAAAAAAGACCCAATTCTCTCYTTTCCATTTTATGGCTCTCTTTGTTTCCTCAATTTGTAATTGAGACTCTTTTTTGTTGGGGATTTTTTTTGGTTTTGAAATTAGAGAAGAAAATTCTGGAGAACTTTTTTTTCAAAATTTGAAAAAAAATTACTGTTTCAGAAATAATTGAAACACGGAAAATTGTGAAGTTGTCAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28555</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>56166</contig_pos>
        <strand>+</strand>
        <context>TTCCATTTTA[A/T]GGCTCTCTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAGAATCTTGGTCCCTAAAAAAAGACCCAATTCTCTCATTTCCATTTTA</left_flank>
        <right_flank>GGCTCTCTTTGTTTCCTCAATTTGTAATTGAGACTCTTTTTTGTTGGGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGAAAATATAATGGAGAAAAAGGAATTATATATTCAGAAATTGGATCTTAAATTTGTCTGGAACACTTTTTTTTGGATTTTCAAAACTTCAAAAAATTATTGAAAAAAATCTGAATTTCAGAGTTTCTGAAAACCGAGTATCTCCACAATTAGAAATTTTTGAATTCTTGAGAATTTCAAAAATTTTGGAAACAGTAAAAAAATCCCTGATAGTGAAGTTAAATTTTTTTAATATATCAAAAAAAAATCCTAGGAAGTCCAAAAGTTATGGAATCGTAGGAATTTCAGAAATAGAGATTTAAAAAATACGAAAAATCGTATTTTTCGATTTTCTGATTTTTAAACTATCTTTAAAAATAGAAATTCTGTTAAAACATTTTTGGAAACTTGATATTTTTGAAAAAAGTTTTCTAGAAATCTCAAAATTCTCAAATTTTCAGGAAACAAGAAAGAATCTTGGTCCCTAAAAAAAGACCCAATTCTCTCATTTCCATTTTATGGCTCTCTTTGTTTCCTCAATTTGTAATTGAGACTCTTTTTTGTTGGGGATTTTTTTTGGTTTTGAAATTAGAGAAGAAAATTCTGGAGAACTTTTTTTTCAAAATTTGAAAAAAAATTACTGTTTCAGAAATAATTGAAACACGGAAAATTGTGAAGTTGTCAGTTTGAAAAGCCATAAATTTGAATACTCCAAAAATTCAGAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCCAAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTAAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTAAGAAATTCAGAAATTCA</canonical>
            <polymorphic>GGGAAAATATAATGGAGAAAAAGGAATTATATATTCAGAAATTGGATCTTAAATTTGTCTGGAACACTTTTTTTTGGATTTTCAAAACTTCAAAAAATTATTGAAAAAAATCTGAATTTCAGAGTTTCTGAAAACCGAGTATCTCCACAATTAGAAATTTTTGAATTCTTGAGAATTTCAAAAATTTTGGAAACAGTAAAAAAATCCCTGATAGTGAAGTTAAATTTTTTTAATATATCAAAAAAAAATCCTAGGAAGTCCAAAAGTTATGGAATCGTAGGAATTTCAGAAATAGAGATTTAAAAAATACGAAAAATCGTATTTTTCGATTTTCTGATTTTTAAACTATCTTTAAAAATAGAAATTCTGTTAAAACATTTTTGGAAACTTGATATTTTTGAAAAAAGTTTTCTAGAAATCTCAAAATTCTCAAATTTTCAGGAAACAAGAAAGAATCTTGGTCCCTAAAAAAAGACCCAATTCTCTCATTTCCATTTTAWGGCTCTCTTTGTTTCCTCAATTTGTAATTGAGACTCTTTTTTGTTGGGGATTTTTTTTGGTTTTGAAATTAGAGAAGAAAATTCTGGAGAACTTTTTTTTCAAAATTTGAAAAAAAATTACTGTTTCAGAAATAATTGAAACACGGAAAATTGTGAAGTTGTCAGTTTGAAAAGCCATAAATTTGAATACTCCAAAAATTCAGAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCCAAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTAAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTAAGAAATTCAGAAATTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNTGG</site>
                <isoschizomers>
                    <enzyme>AccB7I</enzyme>
                    <enzyme>PflBI</enzyme>
                    <enzyme>PflMI</enzyme>
                    <enzyme>Van91I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCAGGAAACAAGAAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>AAACTGACAACTTCACAATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCAGGAAACAAGAAAGAATCTTGGTCCCTAAAAAAAGACCCAATTCTCTCATTTCCATTTTATGGCTCTCTTTGTTTCCTCAATTTGTAATTGAGACTCTTTTTTGTTGGGGATTTTTTTTGGTTTTGAAATTAGAGAAGAAAATTCTGGAGAACTTTTTTTTCAAAATTTGAAAAAAAATTACTGTTTCAGAAATAATTGAAACACGGAAAATTGTGAAGTTGTCAGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCAGGAAACAAGAAAGAATCTTGGTCCCTAAAAAAAGACCCAATTCTCTCATTTCCATTTTAWGGCTCTCTTTGTTTCCTCAATTTGTAATTGAGACTCTTTTTTGTTGGGGATTTTTTTTGGTTTTGAAATTAGAGAAGAAAATTCTGGAGAACTTTTTTTTCAAAATTTGAAAAAAAATTACTGTTTCAGAAATAATTGAAACACGGAAAATTGTGAAGTTGTCAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28556</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>56182</contig_pos>
        <strand>+</strand>
        <context>TCTTTGTTTC[A/C]TYAATTTGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAAAAAAAGACCCAATTCTCTCATTTCCATTTTATGGCTCTCTTTGTTTC</left_flank>
        <right_flank>TCAATTTGTAATTGAGACTCTTTTTTGTTGGGGATTTTTTTTGGTTTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAAGGAATTATATATTCAGAAATTGGATCTTAAATTTGTCTGGAACACTTTTTTTTGGATTTTCAAAACTTCAAAAAATTATTGAAAAAAATCTGAATTTCAGAGTTTCTGAAAACCGAGTATCTCCACAATTAGAAATTTTTGAATTCTTGAGAATTTCAAAAATTTTGGAAACAGTAAAAAAATCCCTGATAGTGAAGTTAAATTTTTTTAATATATCAAAAAAAAATCCTAGGAAGTCCAAAAGTTATGGAATCGTAGGAATTTCAGAAATAGAGATTTAAAAAATACGAAAAATCGTATTTTTCGATTTTCTGATTTTTAAACTATCTTTAAAAATAGAAATTCTGTTAAAACATTTTTGGAAACTTGATATTTTTGAAAAAAGTTTTCTAGAAATCTCAAAATTCTCAAATTTTCAGGAAACAAGAAAGAATCTTGGTCCCTAAAAAAAGACCCAATTCTCTCATTTCCATTTTATGGCTCTCTTTGTTTCCTCAATTTGTAATTGAGACTCTTTTTTGTTGGGGATTTTTTTTGGTTTTGAAATTAGAGAAGAAAATTCTGGAGAACTTTTTTTTCAAAATTTGAAAAAAAATTACTGTTTCAGAAATAATTGAAACACGGAAAATTGTGAAGTTGTCAGTTTGAAAAGCCATAAATTTGAATACTCCAAAAATTCAGAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCCAAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTAAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTAAGAAATTCAGAAATTCAGAAAGTTCGCAAATCT</canonical>
            <polymorphic>GAAAAAGGAATTATATATTCAGAAATTGGATCTTAAATTTGTCTGGAACACTTTTTTTTGGATTTTCAAAACTTCAAAAAATTATTGAAAAAAATCTGAATTTCAGAGTTTCTGAAAACCGAGTATCTCCACAATTAGAAATTTTTGAATTCTTGAGAATTTCAAAAATTTTGGAAACAGTAAAAAAATCCCTGATAGTGAAGTTAAATTTTTTTAATATATCAAAAAAAAATCCTAGGAAGTCCAAAAGTTATGGAATCGTAGGAATTTCAGAAATAGAGATTTAAAAAATACGAAAAATCGTATTTTTCGATTTTCTGATTTTTAAACTATCTTTAAAAATAGAAATTCTGTTAAAACATTTTTGGAAACTTGATATTTTTGAAAAAAGTTTTCTAGAAATCTCAAAATTCTCAAATTTTCAGGAAACAAGAAAGAATCTTGGTCCCTAAAAAAAGACCCAATTCTCTCATTTCCATTTTATGGCTCTCTTTGTTTCMTCAATTTGTAATTGAGACTCTTTTTTGTTGGGGATTTTTTTTGGTTTTGAAATTAGAGAAGAAAATTCTGGAGAACTTTTTTTTCAAAATTTGAAAAAAAATTACTGTTTCAGAAATAATTGAAACACGGAAAATTGTGAAGTTGTCAGTTTGAAAAGCCATAAATTTGAATACTCCAAAAATTCAGAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCCAAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTAAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTAAGAAATTCAGAAATTCAGAAAGTTCGCAAATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCAGGAAACAAGAAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>AAACTGACAACTTCACAATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCAGGAAACAAGAAAGAATCTTGGTCCCTAAAAAAAGACCCAATTCTCTCATTTCCATTTTATGGCTCTCTTTGTTTCCTCAATTTGTAATTGAGACTCTTTTTTGTTGGGGATTTTTTTTGGTTTTGAAATTAGAGAAGAAAATTCTGGAGAACTTTTTTTTCAAAATTTGAAAAAAAATTACTGTTTCAGAAATAATTGAAACACGGAAAATTGTGAAGTTGTCAGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCAGGAAACAAGAAAGAATCTTGGTCCCTAAAAAAAGACCCAATTCTCTCATTTCCATTTTATGGCTCTCTTTGTTTCMTCAATTTGTAATTGAGACTCTTTTTTGTTGGGGATTTTTTTTGGTTTTGAAATTAGAGAAGAAAATTCTGGAGAACTTTTTTTTCAAAATTTGAAAAAAAATTACTGTTTCAGAAATAATTGAAACACGGAAAATTGTGAAGTTGTCAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28557</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>56184</contig_pos>
        <strand>+</strand>
        <context>TTTGTTTCMT[C/T]AATTTGTAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAAGACCCAATTCTCTCATTTCCATTTTATGGCTCTCTTTGTTTCCT</left_flank>
        <right_flank>AATTTGTAATTGAGACTCTTTTTTGTTGGGGATTTTTTTTGGTTTTGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGGAATTATATATTCAGAAATTGGATCTTAAATTTGTCTGGAACACTTTTTTTTGGATTTTCAAAACTTCAAAAAATTATTGAAAAAAATCTGAATTTCAGAGTTTCTGAAAACCGAGTATCTCCACAATTAGAAATTTTTGAATTCTTGAGAATTTCAAAAATTTTGGAAACAGTAAAAAAATCCCTGATAGTGAAGTTAAATTTTTTTAATATATCAAAAAAAAATCCTAGGAAGTCCAAAAGTTATGGAATCGTAGGAATTTCAGAAATAGAGATTTAAAAAATACGAAAAATCGTATTTTTCGATTTTCTGATTTTTAAACTATCTTTAAAAATAGAAATTCTGTTAAAACATTTTTGGAAACTTGATATTTTTGAAAAAAGTTTTCTAGAAATCTCAAAATTCTCAAATTTTCAGGAAACAAGAAAGAATCTTGGTCCCTAAAAAAAGACCCAATTCTCTCATTTCCATTTTATGGCTCTCTTTGTTTCCTCAATTTGTAATTGAGACTCTTTTTTGTTGGGGATTTTTTTTGGTTTTGAAATTAGAGAAGAAAATTCTGGAGAACTTTTTTTTCAAAATTTGAAAAAAAATTACTGTTTCAGAAATAATTGAAACACGGAAAATTGTGAAGTTGTCAGTTTGAAAAGCCATAAATTTGAATACTCCAAAAATTCAGAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCCAAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTAAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTAAGAAATTCAGAAATTCAGAAAGTTCGCAAATCTAG</canonical>
            <polymorphic>AAAAGGAATTATATATTCAGAAATTGGATCTTAAATTTGTCTGGAACACTTTTTTTTGGATTTTCAAAACTTCAAAAAATTATTGAAAAAAATCTGAATTTCAGAGTTTCTGAAAACCGAGTATCTCCACAATTAGAAATTTTTGAATTCTTGAGAATTTCAAAAATTTTGGAAACAGTAAAAAAATCCCTGATAGTGAAGTTAAATTTTTTTAATATATCAAAAAAAAATCCTAGGAAGTCCAAAAGTTATGGAATCGTAGGAATTTCAGAAATAGAGATTTAAAAAATACGAAAAATCGTATTTTTCGATTTTCTGATTTTTAAACTATCTTTAAAAATAGAAATTCTGTTAAAACATTTTTGGAAACTTGATATTTTTGAAAAAAGTTTTCTAGAAATCTCAAAATTCTCAAATTTTCAGGAAACAAGAAAGAATCTTGGTCCCTAAAAAAAGACCCAATTCTCTCATTTCCATTTTATGGCTCTCTTTGTTTCCTYAATTTGTAATTGAGACTCTTTTTTGTTGGGGATTTTTTTTGGTTTTGAAATTAGAGAAGAAAATTCTGGAGAACTTTTTTTTCAAAATTTGAAAAAAAATTACTGTTTCAGAAATAATTGAAACACGGAAAATTGTGAAGTTGTCAGTTTGAAAAGCCATAAATTTGAATACTCCAAAAATTCAGAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCCAAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTAAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTAAGAAATTCAGAAATTCAGAAAGTTCGCAAATCTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCAGGAAACAAGAAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>AAACTGACAACTTCACAATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCAGGAAACAAGAAAGAATCTTGGTCCCTAAAAAAAGACCCAATTCTCTCATTTCCATTTTATGGCTCTCTTTGTTTCCTCAATTTGTAATTGAGACTCTTTTTTGTTGGGGATTTTTTTTGGTTTTGAAATTAGAGAAGAAAATTCTGGAGAACTTTTTTTTCAAAATTTGAAAAAAAATTACTGTTTCAGAAATAATTGAAACACGGAAAATTGTGAAGTTGTCAGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCAGGAAACAAGAAAGAATCTTGGTCCCTAAAAAAAGACCCAATTCTCTCATTTCCATTTTATGGCTCTCTTTGTTTCCTYAATTTGTAATTGAGACTCTTTTTTGTTGGGGATTTTTTTTGGTTTTGAAATTAGAGAAGAAAATTCTGGAGAACTTTTTTTTCAAAATTTGAAAAAAAATTACTGTTTCAGAAATAATTGAAACACGGAAAATTGTGAAGTTGTCAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28558</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>56203</contig_pos>
        <strand>+</strand>
        <context>ATTGAGACTC[A/G]TTTTTGTTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTTCCATTTTATGGCTCTCTTTGTTTCCTCAATTTGTAATTGAGACTC</left_flank>
        <right_flank>TTTTTGTTGGGGATTTTTTTTGGTTTTGAAATTAGAGAAGAAAATTCTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATTGGATCTTAAATTTGTCTGGAACACTTTTTTTTGGATTTTCAAAACTTCAAAAAATTATTGAAAAAAATCTGAATTTCAGAGTTTCTGAAAACCGAGTATCTCCACAATTAGAAATTTTTGAATTCTTGAGAATTTCAAAAATTTTGGAAACAGTAAAAAAATCCCTGATAGTGAAGTTAAATTTTTTTAATATATCAAAAAAAAATCCTAGGAAGTCCAAAAGTTATGGAATCGTAGGAATTTCAGAAATAGAGATTTAAAAAATACGAAAAATCGTATTTTTCGATTTTCTGATTTTTAAACTATCTTTAAAAATAGAAATTCTGTTAAAACATTTTTGGAAACTTGATATTTTTGAAAAAAGTTTTCTAGAAATCTCAAAATTCTCAAATTTTCAGGAAACAAGAAAGAATCTTGGTCCCTAAAAAAAGACCCAATTCTCTCATTTCCATTTTATGGCTCTCTTTGTTTCCTCAATTTGTAATTGAGACTCTTTTTTGTTGGGGATTTTTTTTGGTTTTGAAATTAGAGAAGAAAATTCTGGAGAACTTTTTTTTCAAAATTTGAAAAAAAATTACTGTTTCAGAAATAATTGAAACACGGAAAATTGTGAAGTTGTCAGTTTGAAAAGCCATAAATTTGAATACTCCAAAAATTCAGAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCCAAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTAAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTAAGAAATTCAGAAATTCAGAAAGTTCGCAAATCTAGAATCAAATTTGAAAAATCT</canonical>
            <polymorphic>GAAATTGGATCTTAAATTTGTCTGGAACACTTTTTTTTGGATTTTCAAAACTTCAAAAAATTATTGAAAAAAATCTGAATTTCAGAGTTTCTGAAAACCGAGTATCTCCACAATTAGAAATTTTTGAATTCTTGAGAATTTCAAAAATTTTGGAAACAGTAAAAAAATCCCTGATAGTGAAGTTAAATTTTTTTAATATATCAAAAAAAAATCCTAGGAAGTCCAAAAGTTATGGAATCGTAGGAATTTCAGAAATAGAGATTTAAAAAATACGAAAAATCGTATTTTTCGATTTTCTGATTTTTAAACTATCTTTAAAAATAGAAATTCTGTTAAAACATTTTTGGAAACTTGATATTTTTGAAAAAAGTTTTCTAGAAATCTCAAAATTCTCAAATTTTCAGGAAACAAGAAAGAATCTTGGTCCCTAAAAAAAGACCCAATTCTCTCATTTCCATTTTATGGCTCTCTTTGTTTCCTCAATTTGTAATTGAGACTCRTTTTTGTTGGGGATTTTTTTTGGTTTTGAAATTAGAGAAGAAAATTCTGGAGAACTTTTTTTTCAAAATTTGAAAAAAAATTACTGTTTCAGAAATAATTGAAACACGGAAAATTGTGAAGTTGTCAGTTTGAAAAGCCATAAATTTGAATACTCCAAAAATTCAGAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCCAAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTAAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTAAGAAATTCAGAAATTCAGAAAGTTCGCAAATCTAGAATCAAATTTGAAAAATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCAGGAAACAAGAAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>AAACTGACAACTTCACAATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCAGGAAACAAGAAAGAATCTTGGTCCCTAAAAAAAGACCCAATTCTCTCATTTCCATTTTATGGCTCTCTTTGTTTCCTCAATTTGTAATTGAGACTCTTTTTTGTTGGGGATTTTTTTTGGTTTTGAAATTAGAGAAGAAAATTCTGGAGAACTTTTTTTTCAAAATTTGAAAAAAAATTACTGTTTCAGAAATAATTGAAACACGGAAAATTGTGAAGTTGTCAGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCAGGAAACAAGAAAGAATCTTGGTCCCTAAAAAAAGACCCAATTCTCTCATTTCCATTTTATGGCTCTCTTTGTTTCCTCAATTTGTAATTGAGACTCRTTTTTGTTGGGGATTTTTTTTGGTTTTGAAATTAGAGAAGAAAATTCTGGAGAACTTTTTTTTCAAAATTTGAAAAAAAATTACTGTTTCAGAAATAATTGAAACACGGAAAATTGTGAAGTTGTCAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28559</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>56225</contig_pos>
        <strand>+</strand>
        <context>GATTTTTTTT[A/G]GTTTTGAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGTTTCCTCAATTTGTAATTGAGACTCTTTTTTGTTGGGGATTTTTTTT</left_flank>
        <right_flank>GTTTTGAAATTAGAGAAGAAAATTCTGGAGAACTTTTTTTTCAAAATTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAACACTTTTTTTTGGATTTTCAAAACTTCAAAAAATTATTGAAAAAAATCTGAATTTCAGAGTTTCTGAAAACCGAGTATCTCCACAATTAGAAATTTTTGAATTCTTGAGAATTTCAAAAATTTTGGAAACAGTAAAAAAATCCCTGATAGTGAAGTTAAATTTTTTTAATATATCAAAAAAAAATCCTAGGAAGTCCAAAAGTTATGGAATCGTAGGAATTTCAGAAATAGAGATTTAAAAAATACGAAAAATCGTATTTTTCGATTTTCTGATTTTTAAACTATCTTTAAAAATAGAAATTCTGTTAAAACATTTTTGGAAACTTGATATTTTTGAAAAAAGTTTTCTAGAAATCTCAAAATTCTCAAATTTTCAGGAAACAAGAAAGAATCTTGGTCCCTAAAAAAAGACCCAATTCTCTCATTTCCATTTTATGGCTCTCTTTGTTTCCTCAATTTGTAATTGAGACTCTTTTTTGTTGGGGATTTTTTTTGGTTTTGAAATTAGAGAAGAAAATTCTGGAGAACTTTTTTTTCAAAATTTGAAAAAAAATTACTGTTTCAGAAATAATTGAAACACGGAAAATTGTGAAGTTGTCAGTTTGAAAAGCCATAAATTTGAATACTCCAAAAATTCAGAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCCAAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTAAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTAAGAAATTCAGAAATTCAGAAAGTTCGCAAATCTAGAATCAAATTTGAAAAATCTGGGAAAAAAATTATTTAAAAAA</canonical>
            <polymorphic>TGGAACACTTTTTTTTGGATTTTCAAAACTTCAAAAAATTATTGAAAAAAATCTGAATTTCAGAGTTTCTGAAAACCGAGTATCTCCACAATTAGAAATTTTTGAATTCTTGAGAATTTCAAAAATTTTGGAAACAGTAAAAAAATCCCTGATAGTGAAGTTAAATTTTTTTAATATATCAAAAAAAAATCCTAGGAAGTCCAAAAGTTATGGAATCGTAGGAATTTCAGAAATAGAGATTTAAAAAATACGAAAAATCGTATTTTTCGATTTTCTGATTTTTAAACTATCTTTAAAAATAGAAATTCTGTTAAAACATTTTTGGAAACTTGATATTTTTGAAAAAAGTTTTCTAGAAATCTCAAAATTCTCAAATTTTCAGGAAACAAGAAAGAATCTTGGTCCCTAAAAAAAGACCCAATTCTCTCATTTCCATTTTATGGCTCTCTTTGTTTCCTCAATTTGTAATTGAGACTCTTTTTTGTTGGGGATTTTTTTTRGTTTTGAAATTAGAGAAGAAAATTCTGGAGAACTTTTTTTTCAAAATTTGAAAAAAAATTACTGTTTCAGAAATAATTGAAACACGGAAAATTGTGAAGTTGTCAGTTTGAAAAGCCATAAATTTGAATACTCCAAAAATTCAGAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCCAAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTAAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTAAGAAATTCAGAAATTCAGAAAGTTCGCAAATCTAGAATCAAATTTGAAAAATCTGGGAAAAAAATTATTTAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCAGGAAACAAGAAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>AAACTGACAACTTCACAATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCAGGAAACAAGAAAGAATCTTGGTCCCTAAAAAAAGACCCAATTCTCTCATTTCCATTTTATGGCTCTCTTTGTTTCCTCAATTTGTAATTGAGACTCTTTTTTGTTGGGGATTTTTTTTGGTTTTGAAATTAGAGAAGAAAATTCTGGAGAACTTTTTTTTCAAAATTTGAAAAAAAATTACTGTTTCAGAAATAATTGAAACACGGAAAATTGTGAAGTTGTCAGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCAGGAAACAAGAAAGAATCTTGGTCCCTAAAAAAAGACCCAATTCTCTCATTTCCATTTTATGGCTCTCTTTGTTTCCTCAATTTGTAATTGAGACTCTTTTTTGTTGGGGATTTTTTTTRGTTTTGAAATTAGAGAAGAAAATTCTGGAGAACTTTTTTTTCAAAATTTGAAAAAAAATTACTGTTTCAGAAATAATTGAAACACGGAAAATTGTGAAGTTGTCAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28561</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>84431</contig_pos>
        <strand></strand>
        <context>ttcaaagtGA[C/T]CTATTTTTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGATTTTTGATAACTACAACAGTTTTTGAGAAATGCGCTTTCAAAGTGA</left_flank>
        <right_flank>CTATTTTTAAGAAATTCGATTGGTCTGATGGCTACACCAAGAGTCTCGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTTCTTCCCTATCATTATTACTAATAACATTCCCCAAATTCCGTATATCCGGATGTATGTCGCGTGCCTTTTCACCCATTTAAAGTTAACTGATTGAGCTGAAACCTGGACAGATAGATCAGAAATGTGTCTTGGTTGATGCCCGACCATTCGTTTTTCGAAATTTTGATTTTGAAGTCTTCTGGAGACGTTCCTTGGTTTCACCACAGTAAAGCGTGGTGGGCAGAGGAAGAGAGGGCGAGAAATTAAAACTTTTCTCATGACACCTCTTGTTACAAAAAACCGAACTTTTTAGGAAAACTATTGGAGTCGGGGAGTGTAACAGATTGGTATTCTTTTTGGATTGATGGACAACGACAGTGCGATTCATTGGGAAATTGCGTAAGTGGTTGGGGAGTTCAAAAGCGCATATCTCAAAAACTACAATAGCTACATTTTCATAGTTTATAGATTTTTGATAACTACAACAGTTTTTGAGAAATGCGCTTTCAAAGTGACCTATTTTTAAGAAATTCGATTGGTCTGATGGCTACACCAAGAGTCTCGATGCTTTGAACACCTCCACCAATTTTCATGAATCAAAAGGCGGAGAAGATTGTCTTGCTGTTTCCTATATGACAGCAGCGCCTTCGAAAACTATAAACGACTGTTCTTGTATTGATCATAAAAATCCCGCAGGATACGTTTGTGGTTACCAGTTGATATGATGTCTATTTATTGAAAAATGCGCGTGTAAATGAATTTTTCAATTGTTTCAGGATCTCGAGATTATTTGAAATCAAATCAATTACTTAAAATTAGCTACATATTTCGTAAAACCCAATAAAAAGGGGCGGAGCCTGCGGGCACATCTTTTAATGTTTTGTTTCACATAGAAACGGTCAAAGAGTTTACGACTTCCTCTAAAATCTTCAAACAACTTTTTCCCATTCTTTGATTCCGCAATTCATCTCAACATTCTTTCCACTCCCATCCGGATTCTGCTTGATTCCAGGATT</canonical>
            <polymorphic>AGTTTCTTCCCTATCATTATTACTAATAACATTCCCCAAATTCCGTATATCCGGATGTATGTCGCGTGCCTTTTCACCCATTTAAAGTTAACTGATTGAGCTGAAACCTGGACAGATAGATCAGAAATGTGTCTTGGTTGATGCCCGACCATTCGTTTTTCGAAATTTTGATTTTGAAGTCTTCTGGAGACGTTCCTTGGTTTCACCACAGTAAAGCGTGGTGGGCAGAGGAAGAGAGGGCGAGAAATTAAAACTTTTCTCATGACACCTCTTGTTACAAAAAACCGAACTTTTTAGGAAAACTATTGGAGTCGGGGAGTGTAACAGATTGGTATTCTTTTTGGATTGATGGACAACGACAGTGCGATTCATTGGGAAATTGCGTAAGTGGTTGGGGAGTTCAAAAGCGCATATCTCAAAAACTACAATAGCTACATTTTCATAGTTTATAGATTTTTGATAACTACAACAGTTTTTGAGAAATGCGCTTTCAAAGTGAYCTATTTTTAAGAAATTCGATTGGTCTGATGGCTACACCAAGAGTCTCGATGCTTTGAACACCTCCACCAATTTTCATGAATCAAAAGGCGGAGAAGATTGTCTTGCTGTTTCCTATATGACAGCAGCGCCTTCGAAAACTATAAACGACTGTTCTTGTATTGATCATAAAAATCCCGCAGGATACGTTTGTGGTTACCAGTTGATATGATGTCTATTTATTGAAAAATGCGCGTGTAAATGAATTTTTCAATTGTTTCAGGATCTCGAGATTATTTGAAATCAAATCAATTACTTAAAATTAGCTACATATTTCGTAAAACCCAATAAAAAGGGGCGGAGCCTGCGGGCACATCTTTTAATGTTTTGTTTCACATAGAAACGGTCAAAGAGTTTACGACTTCCTCTAAAATCTTCAAACAACTTTTTCCCATTCTTTGATTCCGCAATTCATCTCAACATTCTTTCCACTCCCATCCGGATTCTGCTTGATTCCAGGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>308 273 197 175 47</canonical_bands>
                <polymorphic_bands>372 308 273 47</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTCTTTTTGGATTGATGGAC</pcr_primer_p1>
		<pcr_primer_p2>GATTCATGAAAATTGGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATTCTTTTTGGATTGATGGACAACGACAGTGCGATTCATTGGGAAATTGCGTAAGTGGTTGGGGAGTTCAAAAGCGCATATCTCAAAAACTACAATAGCTACATTTTCATAGTTTATAGATTTTTGATAACTACAACAGTTTTTGAGAAATGCGCTTTCAAAGTGACCTATTTTTAAGAAATTCGATTGGTCTGATGGCTACACCAAGAGTCTCGATGCTTTGAACACCTCCACCAATTTTCATGAATC</canonical_amplicon>
		<polymorphic_amplicon>TATTCTTTTTGGATTGATGGACAACGACAGTGCGATTCATTGGGAAATTGCGTAAGTGGTTGGGGAGTTCAAAAGCGCATATCTCAAAAACTACAATAGCTACATTTTCATAGTTTATAGATTTTTGATAACTACAACAGTTTTTGAGAAATGCGCTTTCAAAGTGAYCTATTTTTAAGAAATTCGATTGGTCTGATGGCTACACCAAGAGTCTCGATGCTTTGAACACCTCCACCAATTTTCATGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28562</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>87151</contig_pos>
        <strand>+</strand>
        <context>tatatatata[G/T]agcwagctaa</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATA</left_flank>
        <right_flank>AGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGACAGTGAATGACACTTCAAAATGTCTCGAACTCAGTTACTTGGAACAGGGCAATCAGTTAATGATAAGAAGAAAAAGTTCTGGAAGCAAGGTTTCGTTTAAAGTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAGATGAGAAACTTGGTTTTTCGTGTTATTTTGTGCTAATATTGACTAGAATTTCTAAATTTGAATAGAATATTCTATTAAACCAAAGTTGGGGGACTAGAATCCCGAACACAAAAATCAACAATGAGTAATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAACCAATTAAGCATATTAGTCCTCAAAGT</canonical>
            <polymorphic>TTGACAGTGAATGACACTTCAAAATGTCTCGAACTCAGTTACTTGGAACAGGGCAATCAGTTAATGATAAGAAGAAAAAGTTCTGGAAGCAAGGTTTCGTTTAAAGTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATAKAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAGATGAGAAACTTGGTTTTTCGTGTTATTTTGTGCTAATATTGACTAGAATTTCTAAATTTGAATAGAATATTCTATTAAACCAAAGTTGGGGGACTAGAATCCCGAACACAAAAATCAACAATGAGTAATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAACCAATTAAGCATATTAGTCCTCAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAAGGTTTCGTTTAAAGTAAGT</pcr_primer_p1>
		<pcr_primer_p2>CTACTTGTTATGTAAACCAACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>655</pcr_amplicon_size>
		<canonical_amplicon>GCAAGGTTTCGTTTAAAGTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAG</canonical_amplicon>
		<polymorphic_amplicon>GCAAGGTTTCGTTTAAAGTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATAKAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28563</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>87155</contig_pos>
        <strand>+</strand>
        <context>tatatakagc[A/T]agctaaaagt</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGC</left_flank>
        <right_flank>AGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTGAATGACACTTCAAAATGTCTCGAACTCAGTTACTTGGAACAGGGCAATCAGTTAATGATAAGAAGAAAAAGTTCTGGAAGCAAGGTTTCGTTTAAAGTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAGATGAGAAACTTGGTTTTTCGTGTTATTTTGTGCTAATATTGACTAGAATTTCTAAATTTGAATAGAATATTCTATTAAACCAAAGTTGGGGGACTAGAATCCCGAACACAAAAATCAACAATGAGTAATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAACCAATTAAGCATATTAGTCCTCAAAGTGATC</canonical>
            <polymorphic>CAGTGAATGACACTTCAAAATGTCTCGAACTCAGTTACTTGGAACAGGGCAATCAGTTAATGATAAGAAGAAAAAGTTCTGGAAGCAAGGTTTCGTTTAAAGTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCWAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAGATGAGAAACTTGGTTTTTCGTGTTATTTTGTGCTAATATTGACTAGAATTTCTAAATTTGAATAGAATATTCTATTAAACCAAAGTTGGGGGACTAGAATCCCGAACACAAAAATCAACAATGAGTAATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAACCAATTAAGCATATTAGTCCTCAAAGTGATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>355 148 143 130 68 45 41 34 32 4</canonical_bands>
                <polymorphic_bands>355 152 143 130 68 45 41 34 32</polymorphic_bands>
            </assay>
            <assay>
                <site>GCTAGC</site>
                <isoschizomers>
                    <enzyme>AsuNHI</enzyme>
                    <enzyme>BmtI</enzyme>
                    <enzyme>NheI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>201 167 164 154 144 119 51</canonical_bands>
                <polymorphic_bands>273 201 167 164 144 51</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>216 148 143 139 130 68 45 41 34 32 4</canonical_bands>
                <polymorphic_bands>216 152 143 139 130 68 45 41 34 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAAGGTTTCGTTTAAAGTAAGT</pcr_primer_p1>
		<pcr_primer_p2>CTACTTGTTATGTAAACCAACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>655</pcr_amplicon_size>
		<canonical_amplicon>GCAAGGTTTCGTTTAAAGTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAG</canonical_amplicon>
		<polymorphic_amplicon>GCAAGGTTTCGTTTAAAGTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCWAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28564</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>87166</contig_pos>
        <strand>+</strand>
        <context>agctaaaagt[G/T]gttaactatg</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGT</left_flank>
        <right_flank>GTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTCAAAATGTCTCGAACTCAGTTACTTGGAACAGGGCAATCAGTTAATGATAAGAAGAAAAAGTTCTGGAAGCAAGGTTTCGTTTAAAGTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAGATGAGAAACTTGGTTTTTCGTGTTATTTTGTGCTAATATTGACTAGAATTTCTAAATTTGAATAGAATATTCTATTAAACCAAAGTTGGGGGACTAGAATCCCGAACACAAAAATCAACAATGAGTAATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAACCAATTAAGCATATTAGTCCTCAAAGTGATCGAATCGGCATT</canonical>
            <polymorphic>ACTTCAAAATGTCTCGAACTCAGTTACTTGGAACAGGGCAATCAGTTAATGATAAGAAGAAAAAGTTCTGGAAGCAAGGTTTCGTTTAAAGTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTKGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAGATGAGAAACTTGGTTTTTCGTGTTATTTTGTGCTAATATTGACTAGAATTTCTAAATTTGAATAGAATATTCTATTAAACCAAAGTTGGGGGACTAGAATCCCGAACACAAAAATCAACAATGAGTAATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAACCAATTAAGCATATTAGTCCTCAAAGTGATCGAATCGGCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAAGGTTTCGTTTAAAGTAAGT</pcr_primer_p1>
		<pcr_primer_p2>CTACTTGTTATGTAAACCAACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>655</pcr_amplicon_size>
		<canonical_amplicon>GCAAGGTTTCGTTTAAAGTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAG</canonical_amplicon>
		<polymorphic_amplicon>GCAAGGTTTCGTTTAAAGTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTKGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28565</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>87183</contig_pos>
        <strand>+</strand>
        <context>tatgaaaatg[C/T]gtcaaatttc</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATG</left_flank>
        <right_flank>GTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCAGTTACTTGGAACAGGGCAATCAGTTAATGATAAGAAGAAAAAGTTCTGGAAGCAAGGTTTCGTTTAAAGTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAGATGAGAAACTTGGTTTTTCGTGTTATTTTGTGCTAATATTGACTAGAATTTCTAAATTTGAATAGAATATTCTATTAAACCAAAGTTGGGGGACTAGAATCCCGAACACAAAAATCAACAATGAGTAATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAACCAATTAAGCATATTAGTCCTCAAAGTGATCGAATCGGCATTACGGGCATTTCTATCGA</canonical>
            <polymorphic>ACTCAGTTACTTGGAACAGGGCAATCAGTTAATGATAAGAAGAAAAAGTTCTGGAAGCAAGGTTTCGTTTAAAGTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGYGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAGATGAGAAACTTGGTTTTTCGTGTTATTTTGTGCTAATATTGACTAGAATTTCTAAATTTGAATAGAATATTCTATTAAACCAAAGTTGGGGGACTAGAATCCCGAACACAAAAATCAACAATGAGTAATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAACCAATTAAGCATATTAGTCCTCAAAGTGATCGAATCGGCATTACGGGCATTTCTATCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>306 150 124 88 76 64 61 46 31 29 10 8 7</canonical_bands>
                <polymorphic_bands>306 152 150 124 76 61 46 31 29 10 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAAGGTTTCGTTTAAAGTAAGT</pcr_primer_p1>
		<pcr_primer_p2>CTACTTGTTATGTAAACCAACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>655</pcr_amplicon_size>
		<canonical_amplicon>GCAAGGTTTCGTTTAAAGTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAG</canonical_amplicon>
		<polymorphic_amplicon>GCAAGGTTTCGTTTAAAGTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGYGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28566</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>87235</contig_pos>
        <strand>+</strand>
        <context>cgataactac[A/C]ryagtttttg</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTAC</left_flank>
        <right_flank>GTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAGCAAGGTTTCGTTTAAAGTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAGATGAGAAACTTGGTTTTTCGTGTTATTTTGTGCTAATATTGACTAGAATTTCTAAATTTGAATAGAATATTCTATTAAACCAAAGTTGGGGGACTAGAATCCCGAACACAAAAATCAACAATGAGTAATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAACCAATTAAGCATATTAGTCCTCAAAGTGATCGAATCGGCATTACGGGCATTTCTATCGAATTCTCGAAAATTGATTTGTGGCTTGTTCTGGACGAAGGAAGTATTCGTTGG</canonical>
            <polymorphic>GGAAGCAAGGTTTCGTTTAAAGTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACMGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAGATGAGAAACTTGGTTTTTCGTGTTATTTTGTGCTAATATTGACTAGAATTTCTAAATTTGAATAGAATATTCTATTAAACCAAAGTTGGGGGACTAGAATCCCGAACACAAAAATCAACAATGAGTAATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAACCAATTAAGCATATTAGTCCTCAAAGTGATCGAATCGGCATTACGGGCATTTCTATCGAATTCTCGAAAATTGATTTGTGGCTTGTTCTGGACGAAGGAAGTATTCGTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAAGGTTTCGTTTAAAGTAAGT</pcr_primer_p1>
		<pcr_primer_p2>CTACTTGTTATGTAAACCAACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>655</pcr_amplicon_size>
		<canonical_amplicon>GCAAGGTTTCGTTTAAAGTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAG</canonical_amplicon>
		<polymorphic_amplicon>GCAAGGTTTCGTTTAAAGTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACMGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28567</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>87236</contig_pos>
        <strand>+</strand>
        <context>gataactacm[A/G]yagtttttgr</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACC</left_flank>
        <right_flank>TAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGCAAGGTTTCGTTTAAAGTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAGATGAGAAACTTGGTTTTTCGTGTTATTTTGTGCTAATATTGACTAGAATTTCTAAATTTGAATAGAATATTCTATTAAACCAAAGTTGGGGGACTAGAATCCCGAACACAAAAATCAACAATGAGTAATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAACCAATTAAGCATATTAGTCCTCAAAGTGATCGAATCGGCATTACGGGCATTTCTATCGAATTCTCGAAAATTGATTTGTGGCTTGTTCTGGACGAAGGAAGTATTCGTTGGG</canonical>
            <polymorphic>GAAGCAAGGTTTCGTTTAAAGTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCRTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAGATGAGAAACTTGGTTTTTCGTGTTATTTTGTGCTAATATTGACTAGAATTTCTAAATTTGAATAGAATATTCTATTAAACCAAAGTTGGGGGACTAGAATCCCGAACACAAAAATCAACAATGAGTAATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAACCAATTAAGCATATTAGTCCTCAAAGTGATCGAATCGGCATTACGGGCATTTCTATCGAATTCTCGAAAATTGATTTGTGGCTTGTTCTGGACGAAGGAAGTATTCGTTGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>467 193 159 147 34</canonical_bands>
                <polymorphic_bands>467 227 159 147</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAAGGTTTCGTTTAAAGTAAGT</pcr_primer_p1>
		<pcr_primer_p2>CTACTTGTTATGTAAACCAACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>655</pcr_amplicon_size>
		<canonical_amplicon>GCAAGGTTTCGTTTAAAGTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAG</canonical_amplicon>
		<polymorphic_amplicon>GCAAGGTTTCGTTTAAAGTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCRTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28568</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>87237</contig_pos>
        <strand>+</strand>
        <context>ataactacmr[C/T]agtttttgrg</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCG</left_flank>
        <right_flank>AGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCAAGGTTTCGTTTAAAGTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAGATGAGAAACTTGGTTTTTCGTGTTATTTTGTGCTAATATTGACTAGAATTTCTAAATTTGAATAGAATATTCTATTAAACCAAAGTTGGGGGACTAGAATCCCGAACACAAAAATCAACAATGAGTAATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAACCAATTAAGCATATTAGTCCTCAAAGTGATCGAATCGGCATTACGGGCATTTCTATCGAATTCTCGAAAATTGATTTGTGGCTTGTTCTGGACGAAGGAAGTATTCGTTGGGA</canonical>
            <polymorphic>AAGCAAGGTTTCGTTTAAAGTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGYAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAGATGAGAAACTTGGTTTTTCGTGTTATTTTGTGCTAATATTGACTAGAATTTCTAAATTTGAATAGAATATTCTATTAAACCAAAGTTGGGGGACTAGAATCCCGAACACAAAAATCAACAATGAGTAATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAACCAATTAAGCATATTAGTCCTCAAAGTGATCGAATCGGCATTACGGGCATTTCTATCGAATTCTCGAAAATTGATTTGTGGCTTGTTCTGGACGAAGGAAGTATTCGTTGGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>468 193 159 146 34</canonical_bands>
                <polymorphic_bands>468 227 159 146</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAAGGTTTCGTTTAAAGTAAGT</pcr_primer_p1>
		<pcr_primer_p2>CTACTTGTTATGTAAACCAACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>655</pcr_amplicon_size>
		<canonical_amplicon>GCAAGGTTTCGTTTAAAGTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAG</canonical_amplicon>
		<polymorphic_amplicon>GCAAGGTTTCGTTTAAAGTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGYAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28569</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>87246</contig_pos>
        <strand>+</strand>
        <context>ryagtttttg[A/G]gawatgcgcy</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTG</left_flank>
        <right_flank>GATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGTTTAAAGTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAGATGAGAAACTTGGTTTTTCGTGTTATTTTGTGCTAATATTGACTAGAATTTCTAAATTTGAATAGAATATTCTATTAAACCAAAGTTGGGGGACTAGAATCCCGAACACAAAAATCAACAATGAGTAATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAACCAATTAAGCATATTAGTCCTCAAAGTGATCGAATCGGCATTACGGGCATTTCTATCGAATTCTCGAAAATTGATTTGTGGCTTGTTCTGGACGAAGGAAGTATTCGTTGGGAAAGGGCATT</canonical>
            <polymorphic>TTCGTTTAAAGTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGRGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAGATGAGAAACTTGGTTTTTCGTGTTATTTTGTGCTAATATTGACTAGAATTTCTAAATTTGAATAGAATATTCTATTAAACCAAAGTTGGGGGACTAGAATCCCGAACACAAAAATCAACAATGAGTAATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAACCAATTAAGCATATTAGTCCTCAAAGTGATCGAATCGGCATTACGGGCATTTCTATCGAATTCTCGAAAATTGATTTGTGGCTTGTTCTGGACGAAGGAAGTATTCGTTGGGAAAGGGCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAAGGTTTCGTTTAAAGTAAGT</pcr_primer_p1>
		<pcr_primer_p2>CTACTTGTTATGTAAACCAACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>655</pcr_amplicon_size>
		<canonical_amplicon>GGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAG</canonical_amplicon>
		<polymorphic_amplicon>GRGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28570</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>87249</contig_pos>
        <strand>+</strand>
        <context>gtttttgrga[A/T]atgcgcytty</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGA</left_flank>
        <right_flank>ATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTAAAGTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAGATGAGAAACTTGGTTTTTCGTGTTATTTTGTGCTAATATTGACTAGAATTTCTAAATTTGAATAGAATATTCTATTAAACCAAAGTTGGGGGACTAGAATCCCGAACACAAAAATCAACAATGAGTAATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAACCAATTAAGCATATTAGTCCTCAAAGTGATCGAATCGGCATTACGGGCATTTCTATCGAATTCTCGAAAATTGATTTGTGGCTTGTTCTGGACGAAGGAAGTATTCGTTGGGAAAGGGCATTCAA</canonical>
            <polymorphic>GTTTAAAGTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGAWATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAGATGAGAAACTTGGTTTTTCGTGTTATTTTGTGCTAATATTGACTAGAATTTCTAAATTTGAATAGAATATTCTATTAAACCAAAGTTGGGGGACTAGAATCCCGAACACAAAAATCAACAATGAGTAATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAACCAATTAAGCATATTAGTCCTCAAAGTGATCGAATCGGCATTACGGGCATTTCTATCGAATTCTCGAAAATTGATTTGTGGCTTGTTCTGGACGAAGGAAGTATTCGTTGGGAAAGGGCATTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAAGGTTTCGTTTAAAGTAAGT</pcr_primer_p1>
		<pcr_primer_p2>CTACTTGTTATGTAAACCAACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>655</pcr_amplicon_size>
		<canonical_amplicon>ATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAG</canonical_amplicon>
		<polymorphic_amplicon>AWATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28571</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>87256</contig_pos>
        <strand>+</strand>
        <context>rgawatgcgc[C/T]ttyaaagtca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGC</left_flank>
        <right_flank>TTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAGATGAGAAACTTGGTTTTTCGTGTTATTTTGTGCTAATATTGACTAGAATTTCTAAATTTGAATAGAATATTCTATTAAACCAAAGTTGGGGGACTAGAATCCCGAACACAAAAATCAACAATGAGTAATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAACCAATTAAGCATATTAGTCCTCAAAGTGATCGAATCGGCATTACGGGCATTTCTATCGAATTCTCGAAAATTGATTTGTGGCTTGTTCTGGACGAAGGAAGTATTCGTTGGGAAAGGGCATTCAATATTACC</canonical>
            <polymorphic>GTAAGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCYTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAGATGAGAAACTTGGTTTTTCGTGTTATTTTGTGCTAATATTGACTAGAATTTCTAAATTTGAATAGAATATTCTATTAAACCAAAGTTGGGGGACTAGAATCCCGAACACAAAAATCAACAATGAGTAATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAACCAATTAAGCATATTAGTCCTCAAAGTGATCGAATCGGCATTACGGGCATTTCTATCGAATTCTCGAAAATTGATTTGTGGCTTGTTCTGGACGAAGGAAGTATTCGTTGGGAAAGGGCATTCAATATTACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAAGGTTTCGTTTAAAGTAAGT</pcr_primer_p1>
		<pcr_primer_p2>CTACTTGTTATGTAAACCAACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>655</pcr_amplicon_size>
		<canonical_amplicon>CCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAG</canonical_amplicon>
		<polymorphic_amplicon>CYTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28572</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>87259</contig_pos>
        <strand>+</strand>
        <context>watgcgcytt[C/T]aaagtcaaca</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTT</left_flank>
        <right_flank>AAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAGATGAGAAACTTGGTTTTTCGTGTTATTTTGTGCTAATATTGACTAGAATTTCTAAATTTGAATAGAATATTCTATTAAACCAAAGTTGGGGGACTAGAATCCCGAACACAAAAATCAACAATGAGTAATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAACCAATTAAGCATATTAGTCCTCAAAGTGATCGAATCGGCATTACGGGCATTTCTATCGAATTCTCGAAAATTGATTTGTGGCTTGTTCTGGACGAAGGAAGTATTCGTTGGGAAAGGGCATTCAATATTACCTGA</canonical>
            <polymorphic>AGTTATTCTAAAAACGTTGTATCTCCAAAACTAAATGAGCTAGAAAATAGTTGATAACTATGAAAATATGTAAAATTTTAAGAGCTAAATTTTTGAAGTTGGCAACTTTTTGATAGCTATTACAGTTTTAGAGATATGCGTCTTCAAACTTTGAAAGCAGGGGAACTACAAAAAGGAATCATATTTTGACATTTTCAGTCTTCGAATTGTCTGAAAGTACTCTTAGTACACTAAACACAACTAGAGCTTCATTTTTGCAGTCGACAACTTTTTGATATTTACAGTAGTTTTAGAGATATGCGCCTTTAAAGTTGCGCGCAGACGACGAGAGCGCTCTTGCTTCTCTGCGTCTCCGAGAGCACTACTTTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTYAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAGATGAGAAACTTGGTTTTTCGTGTTATTTTGTGCTAATATTGACTAGAATTTCTAAATTTGAATAGAATATTCTATTAAACCAAAGTTGGGGGACTAGAATCCCGAACACAAAAATCAACAATGAGTAATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAACCAATTAAGCATATTAGTCCTCAAAGTGATCGAATCGGCATTACGGGCATTTCTATCGAATTCTCGAAAATTGATTTGTGGCTTGTTCTGGACGAAGGAAGTATTCGTTGGGAAAGGGCATTCAATATTACCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>393 307 132 107 61</canonical_bands>
                <polymorphic_bands>393 307 239 61</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>228 160 130 107 104 90 78 61 42</canonical_bands>
                <polymorphic_bands>228 197 160 130 104 78 61 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAAGGTTTCGTTTAAAGTAAGT</pcr_primer_p1>
		<pcr_primer_p2>CTACTTGTTATGTAAACCAACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>655</pcr_amplicon_size>
		<canonical_amplicon>TTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAG</canonical_amplicon>
		<polymorphic_amplicon>TYAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28573</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>87625</contig_pos>
        <strand>+</strand>
        <context>CGTCCAAAMA[A/C]CAATTAAGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAA</left_flank>
        <right_flank>CAATTAAGCATATTAGTCCTCAAAGTGATCGAATCGGCATTACGGGCATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAGATGAGAAACTTGGTTTTTCGTGTTATTTTGTGCTAATATTGACTAGAATTTCTAAATTTGAATAGAATATTCTATTAAACCAAAGTTGGGGGACTAGAATCCCGAACACAAAAATCAACAATGAGTAATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAACCAATTAAGCATATTAGTCCTCAAAGTGATCGAATCGGCATTACGGGCATTTCTATCGAATTCTCGAAAATTGATTTGTGGCTTGTTCTGGACGAAGGAAGTATTCGTTGGGAAAGGGCATTCAATATTACCTGAGTTTCTGGCAACTTGGTGTAATTGCTGAAGATAGAACGGCGTAACTTGGATCCTCTCTTCTCGAAACACTCCTTGATGTACATGGTCATGAACAAGACAACATCATCTTTAGTGTCATGAAGCGAATCCAATGATTTTGCCTCTTTTGCAATTGCCTTCTTGATCCCAACACAGAGAATCCAATGGTTGATTAGGACAGCCGGCGAATCCTTGGAACTCCACAGTTGGCATCCTTCCATCCATTGAGCCGGATTGCAATTGATTTGGACATGGGCAGACGATGAGCTTGTGTTGAGGTTGGGAAGAAACATGGCGGTTGGAATGGGTTGTTCTTCTTGTTGATTCTCGCTTTTTGATCCTTCGTTT</canonical>
            <polymorphic>TTAAAGGCGTATATATATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAGATGAGAAACTTGGTTTTTCGTGTTATTTTGTGCTAATATTGACTAGAATTTCTAAATTTGAATAGAATATTCTATTAAACCAAAGTTGGGGGACTAGAATCCCGAACACAAAAATCAACAATGAGTAATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAAMCAATTAAGCATATTAGTCCTCAAAGTGATCGAATCGGCATTACGGGCATTTCTATCGAATTCTCGAAAATTGATTTGTGGCTTGTTCTGGACGAAGGAAGTATTCGTTGGGAAAGGGCATTCAATATTACCTGAGTTTCTGGCAACTTGGTGTAATTGCTGAAGATAGAACGGCGTAACTTGGATCCTCTCTTCTCGAAACACTCCTTGATGTACATGGTCATGAACAAGACAACATCATCTTTAGTGTCATGAAGCGAATCCAATGATTTTGCCTCTTTTGCAATTGCCTTCTTGATCCCAACACAGAGAATCCAATGGTTGATTAGGACAGCCGGCGAATCCTTGGAACTCCACAGTTGGCATCCTTCCATCCATTGAGCCGGATTGCAATTGATTTGGACATGGGCAGACGATGAGCTTGTGTTGAGGTTGGGAAGAAACATGGCGGTTGGAATGGGTTGTTCTTCTTGTTGATTCTCGCTTTTTGATCCTTCGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAACAATCATTTATTTTCTTTG</pcr_primer_p1>
		<pcr_primer_p2>CCAGAAACTCAGGTAATATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAACCAATTAAGCATATTAGTCCTCAAAGTGATCGAATCGGCATTACGGGCATTTCTATCGAATTCTCGAAAATTGATTTGTGGCTTGTTCTGGACGAAGGAAGTATTCGTTGGGAAAGGGCATTCAATATTACCTGAGTTTCTGG</canonical_amplicon>
		<polymorphic_amplicon>ATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAAMCAATTAAGCATATTAGTCCTCAAAGTGATCGAATCGGCATTACGGGCATTTCTATCGAATTCTCGAAAATTGATTTGTGGCTTGTTCTGGACGAAGGAAGTATTCGTTGGGAAAGGGCATTCAATATTACCTGAGTTTCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28574</snp_id>
        <super_contig>c003901005.Contig1</super_contig>
        <contig_pos>87641</contig_pos>
        <strand></strand>
        <context>AAGCATATTA[G/A]TCCTCAAAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGGACGACGAAACTCCTCATTACCCGTCCAAAAACCAATTAAGCATATTA</left_flank>
        <right_flank>TCCTCAAAGTGATCGAATCGGCATTACGGGCATTTCTATCGAATTCTCGA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAGATGAGAAACTTGGTTTTTCGTGTTATTTTGTGCTAATATTGACTAGAATTTCTAAATTTGAATAGAATATTCTATTAAACCAAAGTTGGGGGACTAGAATCCCGAACACAAAAATCAACAATGAGTAATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAACCAATTAAGCATATTAGTCCTCAAAGTGATCGAATCGGCATTACGGGCATTTCTATCGAATTCTCGAAAATTGATTTGTGGCTTGTTCTGGACGAAGGAAGTATTCGTTGGGAAAGGGCATTCAATATTACCTGAGTTTCTGGCAACTTGGTGTAATTGCTGAAGATAGAACGGCGTAACTTGGATCCTCTCTTCTCGAAACACTCCTTGATGTACATGGTCATGAACAAGACAACATCATCTTTAGTGTCATGAAGCGAATCCAATGATTTTGCCTCTTTTGCAATTGCCTTCTTGATCCCAACACAGAGAATCCAATGGTTGATTAGGACAGCCGGCGAATCCTTGGAACTCCACAGTTGGCATCCTTCCATCCATTGAGCCGGATTGCAATTGATTTGGACATGGGCAGACGATGAGCTTGTGTTGAGGTTGGGAAGAAACATGGCGGTTGGAATGGGTTGTTCTTCTTGTTGATTCTCGCTTTTTGATCCTTCGTTTTCAGCAATCATCCTTC</canonical>
            <polymorphic>ATATATATATAGCTAGCTAAAAGTTGTTAACTATGAAAATGTGTCAAATTTCAAGAGCTTCAATTTTGTAGTTGACAAAATTTCGATAACTACCGTAGTTTTTGGGATATGCGCCTTTAAAGTCAACAGTGCTAGTCCACTGATTGCTCGAAGCGCAGAAAAGAGACACTGACGTCCAAAAAGGGGGGGGGGGGGGCTGCTCGGTTTTGAAGTGGCAGCGTCTTTAAATTTTGTTGGTTTACATAACAAGTAGATGAGAAACTTGGTTTTTCGTGTTATTTTGTGCTAATATTGACTAGAATTTCTAAATTTGAATAGAATATTCTATTAAACCAAAGTTGGGGGACTAGAATCCCGAACACAAAAATCAACAATGAGTAATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAACCAATTAAGCATATTARTCCTCAAAGTGATCGAATCGGCATTACGGGCATTTCTATCGAATTCTCGAAAATTGATTTGTGGCTTGTTCTGGACGAAGGAAGTATTCGTTGGGAAAGGGCATTCAATATTACCTGAGTTTCTGGCAACTTGGTGTAATTGCTGAAGATAGAACGGCGTAACTTGGATCCTCTCTTCTCGAAACACTCCTTGATGTACATGGTCATGAACAAGACAACATCATCTTTAGTGTCATGAAGCGAATCCAATGATTTTGCCTCTTTTGCAATTGCCTTCTTGATCCCAACACAGAGAATCCAATGGTTGATTAGGACAGCCGGCGAATCCTTGGAACTCCACAGTTGGCATCCTTCCATCCATTGAGCCGGATTGCAATTGATTTGGACATGGGCAGACGATGAGCTTGTGTTGAGGTTGGGAAGAAACATGGCGGTTGGAATGGGTTGTTCTTCTTGTTGATTCTCGCTTTTTGATCCTTCGTTTTCAGCAATCATCCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAACAATCATTTATTTTCTTTG</pcr_primer_p1>
		<pcr_primer_p2>CCAGAAACTCAGGTAATATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAACCAATTAAGCATATTAGTCCTCAAAGTGATCGAATCGGCATTACGGGCATTTCTATCGAATTCTCGAAAATTGATTTGTGGCTTGTTCTGGACGAAGGAAGTATTCGTTGGGAAAGGGCATTCAATATTACCTGAGTTTCTGG</canonical_amplicon>
		<polymorphic_amplicon>ATCAACAATCATTTATTTTCTTTGATAAAAAGCTAAATACAAGAAAGTTAGACTATCCATGTTCAGCTCGGGACGACGAAACTCCTCATTACCCGTCCAAAAACCAATTAAGCATATTARTCCTCAAAGTGATCGAATCGGCATTACGGGCATTTCTATCGAATTCTCGAAAATTGATTTGTGGCTTGTTCTGGACGAAGGAAGTATTCGTTGGGAAAGGGCATTCAATATTACCTGAGTTTCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28575</snp_id>
        <super_contig>c003901021.Contig1</super_contig>
        <contig_pos>36217</contig_pos>
        <strand>+</strand>
        <context>AATATGCTCT[G/T]TTTTGCATCC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATCATGATGAAATCCTAACAAATGATGTCCAATTTCATAAATATGCTCT</left_flank>
        <right_flank>TTTTGCATCCAGGGACAATAATTGGATTCCAACCGTATTCTGGAATGTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATAGGAGCCCCTAACTTTTAACTTTGAGCAAATTTGCTTTCAAAGATATAAAAAGATGCTAATCGATGAACTGTTCAAATTAATATCAGAAACATTTTATCAGTTGACATATTTTTGATATCTTGCACAGGAATCGAATAGATTCAGCTCAAACTTGACACTGTGGGGTACTTCTATTATTATTTTTTATGGTACCCTCCAAAAACATCAACCAAACAACACTTTTTGTATTTTTGAATTTTTATTCGACTAGTTTTTTAGTGAGTATAAAATCAGATGATGTGTAGAGTTCAATAATTCAAGTTCTTCTTGTAGTGTTAGTTCATCTCCAGCGGATGATAATTCTAAATTAAATTAATAATAAAATTCGTTGATTCAGTGTTTCGAACTCACTTGTTCAGTTCTATAGTACAAATTTTCGAGTTCCATATCTTGTGGAGCCCATATATCATGATGAAATCCTAACAAATGATGTCCAATTTCATAAATATGCTCTTTTTTGCATCCAGGGACAATAATTGGATTCCAACCGTATTCTGGAATGTAGACGTCCTCATTTTCATTAATTTCCACTTCCTCTTGTTGCTCCTCTTGGATTAATTGTTGAATCATCTGACGTTTTATCGGAGCATACTGTATTGGAGTGAAAGGAACAGGGTACTGTATTGCGTGTTGAATGGGATACTGTAGTTGTGGGTAAGGAACGAAATAATCAAATGGATACGCATTTTGAGGAGGAGGATGGTACGGTATTTCTGTCATCCCATATCCTCCATAAGCCGGCTGCCATTGGACAACTTGTTGTTGAGATTCTTGAGGAAGAAGTTTTAGAGAAAGAAGGCTTGCTGGTTTCTCTTCTTCAAGGGGACTGGAAGGAAGAAGAGGACACACTAGATTTGCTTTCTTTGCATGTCGAACTGGTATAGATTGATAGCTTTTGACAGCAATGAATTGAAGTAGATCAAAACGATAATCGATTGAAACTCCAGTTGAAACA</canonical>
            <polymorphic>AATATAGGAGCCCCTAACTTTTAACTTTGAGCAAATTTGCTTTCAAAGATATAAAAAGATGCTAATCGATGAACTGTTCAAATTAATATCAGAAACATTTTATCAGTTGACATATTTTTGATATCTTGCACAGGAATCGAATAGATTCAGCTCAAACTTGACACTGTGGGGTACTTCTATTATTATTTTTTATGGTACCCTCCAAAAACATCAACCAAACAACACTTTTTGTATTTTTGAATTTTTATTCGACTAGTTTTTTAGTGAGTATAAAATCAGATGATGTGTAGAGTTCAATAATTCAAGTTCTTCTTGTAGTGTTAGTTCATCTCCAGCGGATGATAATTCTAAATTAAATTAATAATAAAATTCGTTGATTCAGTGTTTCGAACTCACTTGTTCAGTTCTATAGTACAAATTTTCGAGTTCCATATCTTGTGGAGCCCATATATCATGATGAAATCCTAACAAATGATGTCCAATTTCATAAATATGCTCTKTTTTGCATCCAGGGACAATAATTGGATTCCAACCGTATTCTGGAATGTAGACGTCCTCATTTTCATTAATTTCCACTTCCTCTTGTTGCTCCTCTTGGATTAATTGTTGAATCATCTGACGTTTTATCGGAGCATACTGTATTGGAGTGAAAGGAACAGGGTACTGTATTGCGTGTTGAATGGGATACTGTAGTTGTGGGTAAGGAACGAAATAATCAAATGGATACGCATTTTGAGGAGGAGGATGGTACGGTATTTCTGTCATCCCATATCCTCCATAAGCCGGCTGCCATTGGACAACTTGTTGTTGAGATTCTTGAGGAAGAAGTTTTAGAGAAAGAAGGCTTGCTGGTTTCTCTTCTTCAAGGGGACTGGAAGGAAGAAGAGGACACACTAGATTTGCTTTCTTTGCATGTCGAACTGGTATAGATTGATAGCTTTTGACAGCAATGAATTGAAGTAGATCAAAACGATAATCGATTGAAACTCCAGTTGAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTACAAATTTTCGAGTTCCATA</pcr_primer_p1>
		<pcr_primer_p2>GTTCCTTTCACTCCAATACAGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGTACAAATTTTCGAGTTCCATATCTTGTGGAGCCCATATATCATGATGAAATCCTAACAAATGATGTCCAATTTCATAAATATGCTCTTTTTTGCATCCAGGGACAATAATTGGATTCCAACCGTATTCTGGAATGTAGACGTCCTCATTTTCATTAATTTCCACTTCCTCTTGTTGCTCCTCTTGGATTAATTGTTGAATCATCTGACGTTTTATCGGAGCATACTGTATTGGAGTGAAAGGAAC</canonical_amplicon>
		<polymorphic_amplicon>AGTACAAATTTTCGAGTTCCATATCTTGTGGAGCCCATATATCATGATGAAATCCTAACAAATGATGTCCAATTTCATAAATATGCTCTKTTTTGCATCCAGGGACAATAATTGGATTCCAACCGTATTCTGGAATGTAGACGTCCTCATTTTCATTAATTTCCACTTCCTCTTGTTGCTCCTCTTGGATTAATTGTTGAATCATCTGACGTTTTATCGGAGCATACTGTATTGGAGTGAAAGGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28576</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>46897</contig_pos>
        <strand>+</strand>
        <context>TCTAATAACT[A/G]CAAAAATTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGAAGTATGTGAAACAAGAATTTTTCGCAAAAAAAGTTATCTAATAACT</left_flank>
        <right_flank>CAAAAATTAGGGCCTAGCGGGTTAAGGGAAGCAAAGTGCATCCAATTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCGAACGCCACTTCAGTATCTGCATGATTCGGTGCAGAAACTTTGAAAAGTGTTATAGCAGGACGATGAGAGGAGATGGGCACAGCACGAGCCAATGAGATAAACTGATAAGTGAGAAACAATGGAACTTTGGAACACTCTTCAGGCAAACCACATGCTGATGGAATACGGTTACAACGACTGCAAACGTTAGTTGGTGTTAGAGATAATTGAACAATTAAAATAATTAAAATAAAACTAACTTTTTGTTCAGGGAGTCATGTACGTAGTTGGTTGGACAGTCGATCGAATGACACTTGAATGATCCGAGGGTGTTCACACATACTTTATCCGTTCCAGCACATTCACCCATTGCACATTCATCCACATCTAAAAATAAATAATTAACCGATTGTAGGAGAACTCATTCTTTGGTAGTATTCTCGATTATTAGTTGGAAGAAATGAAATGAAGTATGTGAAACAAGAATTTTTCGCAAAAAAAGTTATCTAATAACTGCAAAAATTAGGGCCTAGCGGGTTAAGGGAAGCAAAGTGCATCCAATTTAAGGGGTTTTTTGTTAAAATATAAAATTTTTAAGTTTTTTGTAAAATCGTTTTTATGTGATTTTGGTTGGCGCCTTTTGCCTAATACCCAAAGAAATGATTTTTTTCGAAAAAGAAAAGTCAAACAACTAAGTTTCCCAGTTTCAAATGTTTCATTTTTTTCTAGAATGTTTGTCTTTCTATGAATTGGCGCACACTCACCGACACAAGTCCTTCCATCGGGTTGAATCTTATAACCAGGTGGACATTGACACAAATACGATCCCTTTGTATTTATACATCCACCCATACATAAATCATTCCCAGATCCCGCCCAAATCGAGCACTCATCAATATCTTCACACTTGGTCCCATCTGGTCCAAGAGCGAATCCACGATCGCAAATACATTGATAACTTCCTGGGATGTTTACACATTTCTGTTCACACGTTGCAATTCCAGTTGTGCACTCAT</canonical>
            <polymorphic>ACTCGAACGCCACTTCAGTATCTGCATGATTCGGTGCAGAAACTTTGAAAAGTGTTATAGCAGGACGATGAGAGGAGATGGGCACAGCACGAGCCAATGAGATAAACTGATAAGTGAGAAACAATGGAACTTTGGAACACTCTTCAGGCAAACCACATGCTGATGGAATACGGTTACAACGACTGCAAACGTTAGTTGGTGTTAGAGATAATTGAACAATTAAAATAATTAAAATAAAACTAACTTTTTGTTCAGGGAGTCATGTACGTAGTTGGTTGGACAGTCGATCGAATGACACTTGAATGATCCGAGGGTGTTCACACATACTTTATCCGTTCCAGCACATTCACCCATTGCACATTCATCCACATCTAAAAATAAATAATTAACCGATTGTAGGAGAACTCATTCTTTGGTAGTATTCTCGATTATTAGTTGGAAGAAATGAAATGAAGTATGTGAAACAAGAATTTTTCGCAAAAAAAGTTATCTAATAACTRCAAAAATTAGGGCCTAGCGGGTTAAGGGAAGCAAAGTGCATCCAATTTAAGGGGTTTTTTGTTAAAATATAAAATTTTTAAGTTTTTTGTAAAATCGTTTTTATGTGATTTTGGTTGGCGCCTTTTGCCTAATACCCAAAGAAATGATTTTTTTCGAAAAAGAAAAGTCAAACAACTAAGTTTCCCAGTTTCAAATGTTTCATTTTTTTCTAGAATGTTTGTCTTTCTATGAATTGGCGCACACTCACCGACACAAGTCCTTCCATCGGGTTGAATCTTATAACCAGGTGGACATTGACACAAATACGATCCCTTTGTATTTATACATCCACCCATACATAAATCATTCCCAGATCCCGCCCAAATCGAGCACTCATCAATATCTTCACACTTGGTCCCATCTGGTCCAAGAGCGAATCCACGATCGCAAATACATTGATAACTTCCTGGGATGTTTACACATTTCTGTTCACACGTTGCAATTCCAGTTGTGCACTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>441 171 149 144 38 24 14 12 7</canonical_bands>
                <polymorphic_bands>441 182 171 149 24 14 12 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGAAGAAATGAAATGAAGTAT</pcr_primer_p1>
		<pcr_primer_p2>GGGAAACTTAGTTGTTTGACTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTGGAAGAAATGAAATGAAGTATGTGAAACAAGAATTTTTCGCAAAAAAAGTTATCTAATAACTGCAAAAATTAGGGCCTAGCGGGTTAAGGGAAGCAAAGTGCATCCAATTTAAGGGGTTTTTTGTTAAAATATAAAATTTTTAAGTTTTTTGTAAAATCGTTTTTATGTGATTTTGGTTGGCGCCTTTTGCCTAATACCCAAAGAAATGATTTTTTTCGAAAAAGAAAAGTCAAACAACTAAGTTTCCC</canonical_amplicon>
		<polymorphic_amplicon>TTGGAAGAAATGAAATGAAGTATGTGAAACAAGAATTTTTCGCAAAAAAAGTTATCTAATAACTRCAAAAATTAGGGCCTAGCGGGTTAAGGGAAGCAAAGTGCATCCAATTTAAGGGGTTTTTTGTTAAAATATAAAATTTTTAAGTTTTTTGTAAAATCGTTTTTATGTGATTTTGGTTGGCGCCTTTTGCCTAATACCCAAAGAAATGATTTTTTTCGAAAAAGAAAAGTCAAACAACTAAGTTTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28577</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>46935</contig_pos>
        <strand>+</strand>
        <context>GAAGCAAAGT[A/G]CATCCAATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATCTAATAACTGCAAAAATTAGGGCCTAGCGGGTTAAGGGAAGCAAAGT</left_flank>
        <right_flank>CATCCAATTTAAGGGGTTTTTTGTTAAAATATAAAATTTTTAAGTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAACTTTGAAAAGTGTTATAGCAGGACGATGAGAGGAGATGGGCACAGCACGAGCCAATGAGATAAACTGATAAGTGAGAAACAATGGAACTTTGGAACACTCTTCAGGCAAACCACATGCTGATGGAATACGGTTACAACGACTGCAAACGTTAGTTGGTGTTAGAGATAATTGAACAATTAAAATAATTAAAATAAAACTAACTTTTTGTTCAGGGAGTCATGTACGTAGTTGGTTGGACAGTCGATCGAATGACACTTGAATGATCCGAGGGTGTTCACACATACTTTATCCGTTCCAGCACATTCACCCATTGCACATTCATCCACATCTAAAAATAAATAATTAACCGATTGTAGGAGAACTCATTCTTTGGTAGTATTCTCGATTATTAGTTGGAAGAAATGAAATGAAGTATGTGAAACAAGAATTTTTCGCAAAAAAAGTTATCTAATAACTGCAAAAATTAGGGCCTAGCGGGTTAAGGGAAGCAAAGTGCATCCAATTTAAGGGGTTTTTTGTTAAAATATAAAATTTTTAAGTTTTTTGTAAAATCGTTTTTATGTGATTTTGGTTGGCGCCTTTTGCCTAATACCCAAAGAAATGATTTTTTTCGAAAAAGAAAAGTCAAACAACTAAGTTTCCCAGTTTCAAATGTTTCATTTTTTTCTAGAATGTTTGTCTTTCTATGAATTGGCGCACACTCACCGACACAAGTCCTTCCATCGGGTTGAATCTTATAACCAGGTGGACATTGACACAAATACGATCCCTTTGTATTTATACATCCACCCATACATAAATCATTCCCAGATCCCGCCCAAATCGAGCACTCATCAATATCTTCACACTTGGTCCCATCTGGTCCAAGAGCGAATCCACGATCGCAAATACATTGATAACTTCCTGGGATGTTTACACATTTCTGTTCACACGTTGCAATTCCAGTTGTGCACTCATTGACGTCTTCACAGCGACGACCGTCTGAAGCCAATTGG</canonical>
            <polymorphic>GAAACTTTGAAAAGTGTTATAGCAGGACGATGAGAGGAGATGGGCACAGCACGAGCCAATGAGATAAACTGATAAGTGAGAAACAATGGAACTTTGGAACACTCTTCAGGCAAACCACATGCTGATGGAATACGGTTACAACGACTGCAAACGTTAGTTGGTGTTAGAGATAATTGAACAATTAAAATAATTAAAATAAAACTAACTTTTTGTTCAGGGAGTCATGTACGTAGTTGGTTGGACAGTCGATCGAATGACACTTGAATGATCCGAGGGTGTTCACACATACTTTATCCGTTCCAGCACATTCACCCATTGCACATTCATCCACATCTAAAAATAAATAATTAACCGATTGTAGGAGAACTCATTCTTTGGTAGTATTCTCGATTATTAGTTGGAAGAAATGAAATGAAGTATGTGAAACAAGAATTTTTCGCAAAAAAAGTTATCTAATAACTGCAAAAATTAGGGCCTAGCGGGTTAAGGGAAGCAAAGTRCATCCAATTTAAGGGGTTTTTTGTTAAAATATAAAATTTTTAAGTTTTTTGTAAAATCGTTTTTATGTGATTTTGGTTGGCGCCTTTTGCCTAATACCCAAAGAAATGATTTTTTTCGAAAAAGAAAAGTCAAACAACTAAGTTTCCCAGTTTCAAATGTTTCATTTTTTTCTAGAATGTTTGTCTTTCTATGAATTGGCGCACACTCACCGACACAAGTCCTTCCATCGGGTTGAATCTTATAACCAGGTGGACATTGACACAAATACGATCCCTTTGTATTTATACATCCACCCATACATAAATCATTCCCAGATCCCGCCCAAATCGAGCACTCATCAATATCTTCACACTTGGTCCCATCTGGTCCAAGAGCGAATCCACGATCGCAAATACATTGATAACTTCCTGGGATGTTTACACATTTCTGTTCACACGTTGCAATTCCAGTTGTGCACTCATTGACGTCTTCACAGCGACGACCGTCTGAAGCCAATTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>441 171 147 144 45 38 14</canonical_bands>
                <polymorphic_bands>479 171 147 144 45 14</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>134 96 93 77 69 46 41 39 37 31 31 30 27 27 23 21 19 19 16 16 16 16 12 10 10 9 6 6 5 4 4 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>146 134 96 93 46 41 39 37 31 31 30 27 27 23 21 19 19 16 16 16 16 12 10 10 9 6 6 5 4 4 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGAAGAAATGAAATGAAGTAT</pcr_primer_p1>
		<pcr_primer_p2>GGGAAACTTAGTTGTTTGACTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTGGAAGAAATGAAATGAAGTATGTGAAACAAGAATTTTTCGCAAAAAAAGTTATCTAATAACTGCAAAAATTAGGGCCTAGCGGGTTAAGGGAAGCAAAGTGCATCCAATTTAAGGGGTTTTTTGTTAAAATATAAAATTTTTAAGTTTTTTGTAAAATCGTTTTTATGTGATTTTGGTTGGCGCCTTTTGCCTAATACCCAAAGAAATGATTTTTTTCGAAAAAGAAAAGTCAAACAACTAAGTTTCCC</canonical_amplicon>
		<polymorphic_amplicon>TTGGAAGAAATGAAATGAAGTATGTGAAACAAGAATTTTTCGCAAAAAAAGTTATCTAATAACTGCAAAAATTAGGGCCTAGCGGGTTAAGGGAAGCAAAGTRCATCCAATTTAAGGGGTTTTTTGTTAAAATATAAAATTTTTAAGTTTTTTGTAAAATCGTTTTTATGTGATTTTGGTTGGCGCCTTTTGCCTAATACCCAAAGAAATGATTTTTTTCGAAAAAGAAAAGTCAAACAACTAAGTTTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28578</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>56810</contig_pos>
        <strand></strand>
        <context>ctggagatgc[A/C]gcgccgctac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATATACGCCCTTCGAAAAGTTGAACTTGTGGACCTTATGCTGGAGATGC</left_flank>
        <right_flank>GCGCCGCTACCAGCTGAGCTACGGTGGCGCAAGCTGAGGTGGCCCGATAG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACATGGTTTTTTGCAGGAACCAACTTAAAATTAGATCTGCTTGTGTTGAACAAATTAACCTGCTGAAAACAATTACTATCTCGAACTTCTGTTCCTATGCTCCTGAAGAAGTTAAGCTTGTGGGCCTAACGCTGCAGGAAGCTGAGCTACGGTAGCCGACTGTTGAAATATTTGAAAGCGGCACGATATCAACCCGCTGTGTGAACACTAGTCACTGTACACGGTGTTTTTCAAAATACTTTTACAGTTATAATACCAAGTTGAAACTGTAGAAGTTTCATTATTCTAATTGGAAATATCTTTGGAGATTTTGCAAAGATTTTTGTTAGCGAATATTTGGTTATCACTGTTTCACAACATGTTTTTGTGCAGGAGCCAGTTTTAAATTAGATAAACATATGTTGAAAAGAATAATCTGCTGAGAAACAATTTTTTTCGAAATTCCGTTCATATACGCCCTTCGAAAAGTTGAACTTGTGGACCTTATGCTGGAGATGCAGCGCCGCTACCAGCTGAGCTACGGTGGCGCAAGCTGAGGTGGCCCGATAGCAACGCGCTGTGTGAGCAGCTCACTGAGCACTAAACACTGTACACCGTCGCGTACTGTAGCTTCAAAAAAACTCTGAAAATTTTCCTGCCATGTACAACTCTCTTCCATTGTTTCTCAAAATTATGCTACAATCATAATACCAAGTGGTAACTGTAAAATTTGTATCATTCCAGAAAACACTATTTTTGAGATTTCGCTGATTTTGCAGATTTGTGAACATTTAGGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAATTCGAAATTGAAAATTTTCAAGAACTACTGGGCACCTAGTTAAACGTAAAATATTCCAAAGAACCACTTGTTAGTATGCGGAAGAACAAGAAAAAAACAAAGATAAACGACCAGATCATTCTGGAA</canonical>
            <polymorphic>AACATGGTTTTTTGCAGGAACCAACTTAAAATTAGATCTGCTTGTGTTGAACAAATTAACCTGCTGAAAACAATTACTATCTCGAACTTCTGTTCCTATGCTCCTGAAGAAGTTAAGCTTGTGGGCCTAACGCTGCAGGAAGCTGAGCTACGGTAGCCGACTGTTGAAATATTTGAAAGCGGCACGATATCAACCCGCTGTGTGAACACTAGTCACTGTACACGGTGTTTTTCAAAATACTTTTACAGTTATAATACCAAGTTGAAACTGTAGAAGTTTCATTATTCTAATTGGAAATATCTTTGGAGATTTTGCAAAGATTTTTGTTAGCGAATATTTGGTTATCACTGTTTCACAACATGTTTTTGTGCAGGAGCCAGTTTTAAATTAGATAAACATATGTTGAAAAGAATAATCTGCTGAGAAACAATTTTTTTCGAAATTCCGTTCATATACGCCCTTCGAAAAGTTGAACTTGTGGACCTTATGCTGGAGATGCMGCGCCGCTACCAGCTGAGCTACGGTGGCGCAAGCTGAGGTGGCCCGATAGCAACGCGCTGTGTGAGCAGCTCACTGAGCACTAAACACTGTACACCGTCGCGTACTGTAGCTTCAAAAAAACTCTGAAAATTTTCCTGCCATGTACAACTCTCTTCCATTGTTTCTCAAAATTATGCTACAATCATAATACCAAGTGGTAACTGTAAAATTTGTATCATTCCAGAAAACACTATTTTTGAGATTTCGCTGATTTTGCAGATTTGTGAACATTTAGGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAATTCGAAATTGAAAATTTTCAAGAACTACTGGGCACCTAGTTAAACGTAAAATATTCCAAAGAACCACTTGTTAGTATGCGGAAGAACAAGAAAAAAACAAAGATAAACGACCAGATCATTCTGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>258 179 140 128 121 104 56 14</canonical_bands>
                <polymorphic_bands>386 179 140 121 104 56 14</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>434 366 132 68</canonical_bands>
                <polymorphic_bands>434 434 132</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGCCAGTTTTAAATTAGATAAACA</pcr_primer_p1>
		<pcr_primer_p2>GTTGTACATGGCAGGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>276</pcr_amplicon_size>
		<canonical_amplicon>GAGCCAGTTTTAAATTAGATAAACATATGTTGAAAAGAATAATCTGCTGAGAAACAATTTTTTTCGAAATTCCGTTCATATACGCCCTTCGAAAAGTTGAACTTGTGGACCTTATGCTGGAGATGCAGCGCCGCTACCAGCTGAGCTACGGTGGCGCAAGCTGAGGTGGCCCGATAGCAACGCGCTGTGTGAGCAGCTCACTGAGCACTAAACACTGTACACCGTCGCGTACTGTAGCTTCAAAAAAACTCTGAAAATTTTCCTGCCATGTACAAC</canonical_amplicon>
		<polymorphic_amplicon>GAGCCAGTTTTAAATTAGATAAACATATGTTGAAAAGAATAATCTGCTGAGAAACAATTTTTTTCGAAATTCCGTTCATATACGCCCTTCGAAAAGTTGAACTTGTGGACCTTATGCTGGAGATGCMGCGCCGCTACCAGCTGAGCTACGGTGGCGCAAGCTGAGGTGGCCCGATAGCAACGCGCTGTGTGAGCAGCTCACTGAGCACTAAACACTGTACACCGTCGCGTACTGTAGCTTCAAAAAAACTCTGAAAATTTTCCTGCCATGTACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28579</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>56920</contig_pos>
        <strand></strand>
        <context>gcgtactgta[G/A]cttcaaaaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTGTGAGCAGCTCACTGAGCACTAAACACTGTACACCGTCGCGTACTGTA</left_flank>
        <right_flank>CTTCAAAAAAACTCTGAAAATTTTCCTGCCATGTACAACTCTCTTCCATT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTAAGCTTGTGGGCCTAACGCTGCAGGAAGCTGAGCTACGGTAGCCGACTGTTGAAATATTTGAAAGCGGCACGATATCAACCCGCTGTGTGAACACTAGTCACTGTACACGGTGTTTTTCAAAATACTTTTACAGTTATAATACCAAGTTGAAACTGTAGAAGTTTCATTATTCTAATTGGAAATATCTTTGGAGATTTTGCAAAGATTTTTGTTAGCGAATATTTGGTTATCACTGTTTCACAACATGTTTTTGTGCAGGAGCCAGTTTTAAATTAGATAAACATATGTTGAAAAGAATAATCTGCTGAGAAACAATTTTTTTCGAAATTCCGTTCATATACGCCCTTCGAAAAGTTGAACTTGTGGACCTTATGCTGGAGATGCAGCGCCGCTACCAGCTGAGCTACGGTGGCGCAAGCTGAGGTGGCCCGATAGCAACGCGCTGTGTGAGCAGCTCACTGAGCACTAAACACTGTACACCGTCGCGTACTGTAGCTTCAAAAAAACTCTGAAAATTTTCCTGCCATGTACAACTCTCTTCCATTGTTTCTCAAAATTATGCTACAATCATAATACCAAGTGGTAACTGTAAAATTTGTATCATTCCAGAAAACACTATTTTTGAGATTTCGCTGATTTTGCAGATTTGTGAACATTTAGGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAATTCGAAATTGAAAATTTTCAAGAACTACTGGGCACCTAGTTAAACGTAAAATATTCCAAAGAACCACTTGTTAGTATGCGGAAGAACAAGAAAAAAACAAAGATAAACGACCAGATCATTCTGGAAGTATTAGAATGAAGAGGAGACCAATAAATCAGTGAGCTCCACCCTTGATCACCTAGCCGCATGTTTTTGTGTTATTCGACCCACCCTGCCATCTCTCTTTTTCCACTCAT</canonical>
            <polymorphic>AGTTAAGCTTGTGGGCCTAACGCTGCAGGAAGCTGAGCTACGGTAGCCGACTGTTGAAATATTTGAAAGCGGCACGATATCAACCCGCTGTGTGAACACTAGTCACTGTACACGGTGTTTTTCAAAATACTTTTACAGTTATAATACCAAGTTGAAACTGTAGAAGTTTCATTATTCTAATTGGAAATATCTTTGGAGATTTTGCAAAGATTTTTGTTAGCGAATATTTGGTTATCACTGTTTCACAACATGTTTTTGTGCAGGAGCCAGTTTTAAATTAGATAAACATATGTTGAAAAGAATAATCTGCTGAGAAACAATTTTTTTCGAAATTCCGTTCATATACGCCCTTCGAAAAGTTGAACTTGTGGACCTTATGCTGGAGATGCAGCGCCGCTACCAGCTGAGCTACGGTGGCGCAAGCTGAGGTGGCCCGATAGCAACGCGCTGTGTGAGCAGCTCACTGAGCACTAAACACTGTACACCGTCGCGTACTGTARCTTCAAAAAAACTCTGAAAATTTTCCTGCCATGTACAACTCTCTTCCATTGTTTCTCAAAATTATGCTACAATCATAATACCAAGTGGTAACTGTAAAATTTGTATCATTCCAGAAAACACTATTTTTGAGATTTCGCTGATTTTGCAGATTTGTGAACATTTAGGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAATTCGAAATTGAAAATTTTCAAGAACTACTGGGCACCTAGTTAAACGTAAAATATTCCAAAGAACCACTTGTTAGTATGCGGAAGAACAAGAAAAAAACAAAGATAAACGACCAGATCATTCTGGAAGTATTAGAATGAAGAGGAGACCAATAAATCAGTGAGCTCCACCCTTGATCACCTAGCCGCATGTTTTTGTGTTATTCGACCCACCCTGCCATCTCTCTTTTTCCACTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>426 366 74 41 36 25 15 7 5 5</canonical_bands>
                <polymorphic_bands>467 366 74 36 25 15 7 5 5</polymorphic_bands>
            </assay>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>505 337 135 23</canonical_bands>
                <polymorphic_bands>842 135 23</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>426 220 137 54 41 27 20 17 15 9 9 8 7 5 5</canonical_bands>
                <polymorphic_bands>467 220 137 54 27 20 17 15 9 9 8 7 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGCCAGTTTTAAATTAGATAAACA</pcr_primer_p1>
		<pcr_primer_p2>AGAAACAATGGAAGAGAGTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>293</pcr_amplicon_size>
		<canonical_amplicon>GAGCCAGTTTTAAATTAGATAAACATATGTTGAAAAGAATAATCTGCTGAGAAACAATTTTTTTCGAAATTCCGTTCATATACGCCCTTCGAAAAGTTGAACTTGTGGACCTTATGCTGGAGATGCAGCGCCGCTACCAGCTGAGCTACGGTGGCGCAAGCTGAGGTGGCCCGATAGCAACGCGCTGTGTGAGCAGCTCACTGAGCACTAAACACTGTACACCGTCGCGTACTGTAGCTTCAAAAAAACTCTGAAAATTTTCCTGCCATGTACAACTCTCTTCCATTGTTTCT</canonical_amplicon>
		<polymorphic_amplicon>GAGCCAGTTTTAAATTAGATAAACATATGTTGAAAAGAATAATCTGCTGAGAAACAATTTTTTTCGAAATTCCGTTCATATACGCCCTTCGAAAAGTTGAACTTGTGGACCTTATGCTGGAGATGCAGCGCCGCTACCAGCTGAGCTACGGTGGCGCAAGCTGAGGTGGCCCGATAGCAACGCGCTGTGTGAGCAGCTCACTGAGCACTAAACACTGTACACCGTCGCGTACTGTARCTTCAAAAAAACTCTGAAAATTTTCCTGCCATGTACAACTCTCTTCCATTGTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28580</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>56932</contig_pos>
        <strand>+</strand>
        <context>ttcaaaaaaA[A/C]TCTGAAAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CACTGAGCACTAAACACTGTACACCGTCGCGTACTGTAGCTTCAAAAAAA</left_flank>
        <right_flank>TCTGAAAATTTTCCTGCCATGTACAACTCTCTTCCATTGTTTCTCAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGCCTAACGCTGCAGGAAGCTGAGCTACGGTAGCCGACTGTTGAAATATTTGAAAGCGGCACGATATCAACCCGCTGTGTGAACACTAGTCACTGTACACGGTGTTTTTCAAAATACTTTTACAGTTATAATACCAAGTTGAAACTGTAGAAGTTTCATTATTCTAATTGGAAATATCTTTGGAGATTTTGCAAAGATTTTTGTTAGCGAATATTTGGTTATCACTGTTTCACAACATGTTTTTGTGCAGGAGCCAGTTTTAAATTAGATAAACATATGTTGAAAAGAATAATCTGCTGAGAAACAATTTTTTTCGAAATTCCGTTCATATACGCCCTTCGAAAAGTTGAACTTGTGGACCTTATGCTGGAGATGCAGCGCCGCTACCAGCTGAGCTACGGTGGCGCAAGCTGAGGTGGCCCGATAGCAACGCGCTGTGTGAGCAGCTCACTGAGCACTAAACACTGTACACCGTCGCGTACTGTAGCTTCAAAAAAACTCTGAAAATTTTCCTGCCATGTACAACTCTCTTCCATTGTTTCTCAAAATTATGCTACAATCATAATACCAAGTGGTAACTGTAAAATTTGTATCATTCCAGAAAACACTATTTTTGAGATTTCGCTGATTTTGCAGATTTGTGAACATTTAGGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAATTCGAAATTGAAAATTTTCAAGAACTACTGGGCACCTAGTTAAACGTAAAATATTCCAAAGAACCACTTGTTAGTATGCGGAAGAACAAGAAAAAAACAAAGATAAACGACCAGATCATTCTGGAAGTATTAGAATGAAGAGGAGACCAATAAATCAGTGAGCTCCACCCTTGATCACCTAGCCGCATGTTTTTGTGTTATTCGACCCACCCTGCCATCTCTCTTTTTCCACTCATTTTGCGCCCTGA</canonical>
            <polymorphic>GGGCCTAACGCTGCAGGAAGCTGAGCTACGGTAGCCGACTGTTGAAATATTTGAAAGCGGCACGATATCAACCCGCTGTGTGAACACTAGTCACTGTACACGGTGTTTTTCAAAATACTTTTACAGTTATAATACCAAGTTGAAACTGTAGAAGTTTCATTATTCTAATTGGAAATATCTTTGGAGATTTTGCAAAGATTTTTGTTAGCGAATATTTGGTTATCACTGTTTCACAACATGTTTTTGTGCAGGAGCCAGTTTTAAATTAGATAAACATATGTTGAAAAGAATAATCTGCTGAGAAACAATTTTTTTCGAAATTCCGTTCATATACGCCCTTCGAAAAGTTGAACTTGTGGACCTTATGCTGGAGATGCAGCGCCGCTACCAGCTGAGCTACGGTGGCGCAAGCTGAGGTGGCCCGATAGCAACGCGCTGTGTGAGCAGCTCACTGAGCACTAAACACTGTACACCGTCGCGTACTGTAGCTTCAAAAAAAMTCTGAAAATTTTCCTGCCATGTACAACTCTCTTCCATTGTTTCTCAAAATTATGCTACAATCATAATACCAAGTGGTAACTGTAAAATTTGTATCATTCCAGAAAACACTATTTTTGAGATTTCGCTGATTTTGCAGATTTGTGAACATTTAGGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAATTCGAAATTGAAAATTTTCAAGAACTACTGGGCACCTAGTTAAACGTAAAATATTCCAAAGAACCACTTGTTAGTATGCGGAAGAACAAGAAAAAAACAAAGATAAACGACCAGATCATTCTGGAAGTATTAGAATGAAGAGGAGACCAATAAATCAGTGAGCTCCACCCTTGATCACCTAGCCGCATGTTTTTGTGTTATTCGACCCACCCTGCCATCTCTCTTTTTCCACTCATTTTGCGCCCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCCAGTTTTAAATTAGATAAACAT</pcr_primer_p1>
		<pcr_primer_p2>ATAGTGTTTTCTGGAATGATACAA</pcr_primer_p2>
		<pcr_amplicon_size>360</pcr_amplicon_size>
		<canonical_amplicon>AGCCAGTTTTAAATTAGATAAACATATGTTGAAAAGAATAATCTGCTGAGAAACAATTTTTTTCGAAATTCCGTTCATATACGCCCTTCGAAAAGTTGAACTTGTGGACCTTATGCTGGAGATGCAGCGCCGCTACCAGCTGAGCTACGGTGGCGCAAGCTGAGGTGGCCCGATAGCAACGCGCTGTGTGAGCAGCTCACTGAGCACTAAACACTGTACACCGTCGCGTACTGTAGCTTCAAAAAAACTCTGAAAATTTTCCTGCCATGTACAACTCTCTTCCATTGTTTCTCAAAATTATGCTACAATCATAATACCAAGTGGTAACTGTAAAATTTGTATCATTCCAGAAAACACTAT</canonical_amplicon>
		<polymorphic_amplicon>AGCCAGTTTTAAATTAGATAAACATATGTTGAAAAGAATAATCTGCTGAGAAACAATTTTTTTCGAAATTCCGTTCATATACGCCCTTCGAAAAGTTGAACTTGTGGACCTTATGCTGGAGATGCAGCGCCGCTACCAGCTGAGCTACGGTGGCGCAAGCTGAGGTGGCCCGATAGCAACGCGCTGTGTGAGCAGCTCACTGAGCACTAAACACTGTACACCGTCGCGTACTGTAGCTTCAAAAAAAMTCTGAAAATTTTCCTGCCATGTACAACTCTCTTCCATTGTTTCTCAAAATTATGCTACAATCATAATACCAAGTGGTAACTGTAAAATTTGTATCATTCCAGAAAACACTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28581</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>56986</contig_pos>
        <strand>+</strand>
        <context>TCAAAATTAT[G/T]CTACAATCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAAATTTTCCTGCCATGTACAACTCTCTTCCATTGTTTCTCAAAATTAT</left_flank>
        <right_flank>CTACAATCATAATACCAAGTGGTAACTGTAAAATTTGTATCATTCCAGAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCGGCACGATATCAACCCGCTGTGTGAACACTAGTCACTGTACACGGTGTTTTTCAAAATACTTTTACAGTTATAATACCAAGTTGAAACTGTAGAAGTTTCATTATTCTAATTGGAAATATCTTTGGAGATTTTGCAAAGATTTTTGTTAGCGAATATTTGGTTATCACTGTTTCACAACATGTTTTTGTGCAGGAGCCAGTTTTAAATTAGATAAACATATGTTGAAAAGAATAATCTGCTGAGAAACAATTTTTTTCGAAATTCCGTTCATATACGCCCTTCGAAAAGTTGAACTTGTGGACCTTATGCTGGAGATGCAGCGCCGCTACCAGCTGAGCTACGGTGGCGCAAGCTGAGGTGGCCCGATAGCAACGCGCTGTGTGAGCAGCTCACTGAGCACTAAACACTGTACACCGTCGCGTACTGTAGCTTCAAAAAAACTCTGAAAATTTTCCTGCCATGTACAACTCTCTTCCATTGTTTCTCAAAATTATGCTACAATCATAATACCAAGTGGTAACTGTAAAATTTGTATCATTCCAGAAAACACTATTTTTGAGATTTCGCTGATTTTGCAGATTTGTGAACATTTAGGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAATTCGAAATTGAAAATTTTCAAGAACTACTGGGCACCTAGTTAAACGTAAAATATTCCAAAGAACCACTTGTTAGTATGCGGAAGAACAAGAAAAAAACAAAGATAAACGACCAGATCATTCTGGAAGTATTAGAATGAAGAGGAGACCAATAAATCAGTGAGCTCCACCCTTGATCACCTAGCCGCATGTTTTTGTGTTATTCGACCCACCCTGCCATCTCTCTTTTTCCACTCATTTTGCGCCCTGATTTCTCACTCACTCATTTGTCAGTCGGCAGTTGTTCATCATCACAATGTTGTGA</canonical>
            <polymorphic>AAGCGGCACGATATCAACCCGCTGTGTGAACACTAGTCACTGTACACGGTGTTTTTCAAAATACTTTTACAGTTATAATACCAAGTTGAAACTGTAGAAGTTTCATTATTCTAATTGGAAATATCTTTGGAGATTTTGCAAAGATTTTTGTTAGCGAATATTTGGTTATCACTGTTTCACAACATGTTTTTGTGCAGGAGCCAGTTTTAAATTAGATAAACATATGTTGAAAAGAATAATCTGCTGAGAAACAATTTTTTTCGAAATTCCGTTCATATACGCCCTTCGAAAAGTTGAACTTGTGGACCTTATGCTGGAGATGCAGCGCCGCTACCAGCTGAGCTACGGTGGCGCAAGCTGAGGTGGCCCGATAGCAACGCGCTGTGTGAGCAGCTCACTGAGCACTAAACACTGTACACCGTCGCGTACTGTAGCTTCAAAAAAACTCTGAAAATTTTCCTGCCATGTACAACTCTCTTCCATTGTTTCTCAAAATTATKCTACAATCATAATACCAAGTGGTAACTGTAAAATTTGTATCATTCCAGAAAACACTATTTTTGAGATTTCGCTGATTTTGCAGATTTGTGAACATTTAGGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAATTCGAAATTGAAAATTTTCAAGAACTACTGGGCACCTAGTTAAACGTAAAATATTCCAAAGAACCACTTGTTAGTATGCGGAAGAACAAGAAAAAAACAAAGATAAACGACCAGATCATTCTGGAAGTATTAGAATGAAGAGGAGACCAATAAATCAGTGAGCTCCACCCTTGATCACCTAGCCGCATGTTTTTGTGTTATTCGACCCACCCTGCCATCTCTCTTTTTCCACTCATTTTGCGCCCTGATTTCTCACTCACTCATTTGTCAGTCGGCAGTTGTTCATCATCACAATGTTGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCCAGTTTTAAATTAGATAAACAT</pcr_primer_p1>
		<pcr_primer_p2>ATAGTGTTTTCTGGAATGATACAA</pcr_primer_p2>
		<pcr_amplicon_size>360</pcr_amplicon_size>
		<canonical_amplicon>AGCCAGTTTTAAATTAGATAAACATATGTTGAAAAGAATAATCTGCTGAGAAACAATTTTTTTCGAAATTCCGTTCATATACGCCCTTCGAAAAGTTGAACTTGTGGACCTTATGCTGGAGATGCAGCGCCGCTACCAGCTGAGCTACGGTGGCGCAAGCTGAGGTGGCCCGATAGCAACGCGCTGTGTGAGCAGCTCACTGAGCACTAAACACTGTACACCGTCGCGTACTGTAGCTTCAAAAAAACTCTGAAAATTTTCCTGCCATGTACAACTCTCTTCCATTGTTTCTCAAAATTATGCTACAATCATAATACCAAGTGGTAACTGTAAAATTTGTATCATTCCAGAAAACACTAT</canonical_amplicon>
		<polymorphic_amplicon>AGCCAGTTTTAAATTAGATAAACATATGTTGAAAAGAATAATCTGCTGAGAAACAATTTTTTTCGAAATTCCGTTCATATACGCCCTTCGAAAAGTTGAACTTGTGGACCTTATGCTGGAGATGCAGCGCCGCTACCAGCTGAGCTACGGTGGCGCAAGCTGAGGTGGCCCGATAGCAACGCGCTGTGTGAGCAGCTCACTGAGCACTAAACACTGTACACCGTCGCGTACTGTAGCTTCAAAAAAACTCTGAAAATTTTCCTGCCATGTACAACTCTCTTCCATTGTTTCTCAAAATTATKCTACAATCATAATACCAAGTGGTAACTGTAAAATTTGTATCATTCCAGAAAACACTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28582</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>57003</contig_pos>
        <strand>+</strand>
        <context>TCATAATACC[A/G]AGTGGTAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTACAACTCTCTTCCATTGTTTCTCAAAATTATGCTACAATCATAATACC</left_flank>
        <right_flank>AGTGGTAACTGTAAAATTTGTATCATTCCAGAAAACACTATTTTTGAGAT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCGCTGTGTGAACACTAGTCACTGTACACGGTGTTTTTCAAAATACTTTTACAGTTATAATACCAAGTTGAAACTGTAGAAGTTTCATTATTCTAATTGGAAATATCTTTGGAGATTTTGCAAAGATTTTTGTTAGCGAATATTTGGTTATCACTGTTTCACAACATGTTTTTGTGCAGGAGCCAGTTTTAAATTAGATAAACATATGTTGAAAAGAATAATCTGCTGAGAAACAATTTTTTTCGAAATTCCGTTCATATACGCCCTTCGAAAAGTTGAACTTGTGGACCTTATGCTGGAGATGCAGCGCCGCTACCAGCTGAGCTACGGTGGCGCAAGCTGAGGTGGCCCGATAGCAACGCGCTGTGTGAGCAGCTCACTGAGCACTAAACACTGTACACCGTCGCGTACTGTAGCTTCAAAAAAACTCTGAAAATTTTCCTGCCATGTACAACTCTCTTCCATTGTTTCTCAAAATTATGCTACAATCATAATACCAAGTGGTAACTGTAAAATTTGTATCATTCCAGAAAACACTATTTTTGAGATTTCGCTGATTTTGCAGATTTGTGAACATTTAGGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAATTCGAAATTGAAAATTTTCAAGAACTACTGGGCACCTAGTTAAACGTAAAATATTCCAAAGAACCACTTGTTAGTATGCGGAAGAACAAGAAAAAAACAAAGATAAACGACCAGATCATTCTGGAAGTATTAGAATGAAGAGGAGACCAATAAATCAGTGAGCTCCACCCTTGATCACCTAGCCGCATGTTTTTGTGTTATTCGACCCACCCTGCCATCTCTCTTTTTCCACTCATTTTGCGCCCTGATTTCTCACTCACTCATTTGTCAGTCGGCAGTTGTTCATCATCACAATGTTGTGACAAGGTGCCGAGAAGAA</canonical>
            <polymorphic>CCCGCTGTGTGAACACTAGTCACTGTACACGGTGTTTTTCAAAATACTTTTACAGTTATAATACCAAGTTGAAACTGTAGAAGTTTCATTATTCTAATTGGAAATATCTTTGGAGATTTTGCAAAGATTTTTGTTAGCGAATATTTGGTTATCACTGTTTCACAACATGTTTTTGTGCAGGAGCCAGTTTTAAATTAGATAAACATATGTTGAAAAGAATAATCTGCTGAGAAACAATTTTTTTCGAAATTCCGTTCATATACGCCCTTCGAAAAGTTGAACTTGTGGACCTTATGCTGGAGATGCAGCGCCGCTACCAGCTGAGCTACGGTGGCGCAAGCTGAGGTGGCCCGATAGCAACGCGCTGTGTGAGCAGCTCACTGAGCACTAAACACTGTACACCGTCGCGTACTGTAGCTTCAAAAAAACTCTGAAAATTTTCCTGCCATGTACAACTCTCTTCCATTGTTTCTCAAAATTATGCTACAATCATAATACCRAGTGGTAACTGTAAAATTTGTATCATTCCAGAAAACACTATTTTTGAGATTTCGCTGATTTTGCAGATTTGTGAACATTTAGGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAATTCGAAATTGAAAATTTTCAAGAACTACTGGGCACCTAGTTAAACGTAAAATATTCCAAAGAACCACTTGTTAGTATGCGGAAGAACAAGAAAAAAACAAAGATAAACGACCAGATCATTCTGGAAGTATTAGAATGAAGAGGAGACCAATAAATCAGTGAGCTCCACCCTTGATCACCTAGCCGCATGTTTTTGTGTTATTCGACCCACCCTGCCATCTCTCTTTTTCCACTCATTTTGCGCCCTGATTTCTCACTCACTCATTTGTCAGTCGGCAGTTGTTCATCATCACAATGTTGTGACAAGGTGCCGAGAAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGTACAACTCTCTTCCATTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTTCAGAAAGTTTGCATTGA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>CATGTACAACTCTCTTCCATTGTTTCTCAAAATTATGCTACAATCATAATACCAAGTGGTAACTGTAAAATTTGTATCATTCCAGAAAACACTATTTTTGAGATTTCGCTGATTTTGCAGATTTGTGAACATTTAGGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAAT</canonical_amplicon>
		<polymorphic_amplicon>CATGTACAACTCTCTTCCATTGTTTCTCAAAATTATGCTACAATCATAATACCRAGTGGTAACTGTAAAATTTGTATCATTCCAGAAAACACTATTTTTGAGATTTCGCTGATTTTGCAGATTTGTGAACATTTAGGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28583</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>57020</contig_pos>
        <strand>+</strand>
        <context>AACTGTAAAA[G/T]TTGTATCATT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTTTCTCAAAATTATGCTACAATCATAATACCAAGTGGTAACTGTAAAA</left_flank>
        <right_flank>TTGTATCATTCCAGAAAACACTATTTTTGAGATTTCGCTGATTTTGCAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTCACTGTACACGGTGTTTTTCAAAATACTTTTACAGTTATAATACCAAGTTGAAACTGTAGAAGTTTCATTATTCTAATTGGAAATATCTTTGGAGATTTTGCAAAGATTTTTGTTAGCGAATATTTGGTTATCACTGTTTCACAACATGTTTTTGTGCAGGAGCCAGTTTTAAATTAGATAAACATATGTTGAAAAGAATAATCTGCTGAGAAACAATTTTTTTCGAAATTCCGTTCATATACGCCCTTCGAAAAGTTGAACTTGTGGACCTTATGCTGGAGATGCAGCGCCGCTACCAGCTGAGCTACGGTGGCGCAAGCTGAGGTGGCCCGATAGCAACGCGCTGTGTGAGCAGCTCACTGAGCACTAAACACTGTACACCGTCGCGTACTGTAGCTTCAAAAAAACTCTGAAAATTTTCCTGCCATGTACAACTCTCTTCCATTGTTTCTCAAAATTATGCTACAATCATAATACCAAGTGGTAACTGTAAAATTTGTATCATTCCAGAAAACACTATTTTTGAGATTTCGCTGATTTTGCAGATTTGTGAACATTTAGGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAATTCGAAATTGAAAATTTTCAAGAACTACTGGGCACCTAGTTAAACGTAAAATATTCCAAAGAACCACTTGTTAGTATGCGGAAGAACAAGAAAAAAACAAAGATAAACGACCAGATCATTCTGGAAGTATTAGAATGAAGAGGAGACCAATAAATCAGTGAGCTCCACCCTTGATCACCTAGCCGCATGTTTTTGTGTTATTCGACCCACCCTGCCATCTCTCTTTTTCCACTCATTTTGCGCCCTGATTTCTCACTCACTCATTTGTCAGTCGGCAGTTGTTCATCATCACAATGTTGTGACAAGGTGCCGAGAAGAAGACACACATACACATAA</canonical>
            <polymorphic>AGTCACTGTACACGGTGTTTTTCAAAATACTTTTACAGTTATAATACCAAGTTGAAACTGTAGAAGTTTCATTATTCTAATTGGAAATATCTTTGGAGATTTTGCAAAGATTTTTGTTAGCGAATATTTGGTTATCACTGTTTCACAACATGTTTTTGTGCAGGAGCCAGTTTTAAATTAGATAAACATATGTTGAAAAGAATAATCTGCTGAGAAACAATTTTTTTCGAAATTCCGTTCATATACGCCCTTCGAAAAGTTGAACTTGTGGACCTTATGCTGGAGATGCAGCGCCGCTACCAGCTGAGCTACGGTGGCGCAAGCTGAGGTGGCCCGATAGCAACGCGCTGTGTGAGCAGCTCACTGAGCACTAAACACTGTACACCGTCGCGTACTGTAGCTTCAAAAAAACTCTGAAAATTTTCCTGCCATGTACAACTCTCTTCCATTGTTTCTCAAAATTATGCTACAATCATAATACCAAGTGGTAACTGTAAAAKTTGTATCATTCCAGAAAACACTATTTTTGAGATTTCGCTGATTTTGCAGATTTGTGAACATTTAGGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAATTCGAAATTGAAAATTTTCAAGAACTACTGGGCACCTAGTTAAACGTAAAATATTCCAAAGAACCACTTGTTAGTATGCGGAAGAACAAGAAAAAAACAAAGATAAACGACCAGATCATTCTGGAAGTATTAGAATGAAGAGGAGACCAATAAATCAGTGAGCTCCACCCTTGATCACCTAGCCGCATGTTTTTGTGTTATTCGACCCACCCTGCCATCTCTCTTTTTCCACTCATTTTGCGCCCTGATTTCTCACTCACTCATTTGTCAGTCGGCAGTTGTTCATCATCACAATGTTGTGACAAGGTGCCGAGAAGAAGACACACATACACATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>324 230 188 165 79 14</canonical_bands>
                <polymorphic_bands>324 244 230 188 14</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>324 188 165 97 78 43 41 38 12 7 7</canonical_bands>
                <polymorphic_bands>324 203 188 97 78 43 41 12 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGTACAACTCTCTTCCATTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTTCAGAAAGTTTGCATTGA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>CATGTACAACTCTCTTCCATTGTTTCTCAAAATTATGCTACAATCATAATACCAAGTGGTAACTGTAAAATTTGTATCATTCCAGAAAACACTATTTTTGAGATTTCGCTGATTTTGCAGATTTGTGAACATTTAGGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAAT</canonical_amplicon>
		<polymorphic_amplicon>CATGTACAACTCTCTTCCATTGTTTCTCAAAATTATGCTACAATCATAATACCAAGTGGTAACTGTAAAAKTTGTATCATTCCAGAAAACACTATTTTTGAGATTTCGCTGATTTTGCAGATTTGTGAACATTTAGGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28584</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>57050</contig_pos>
        <strand>+</strand>
        <context>ACTATTTTTG[A/T]GATTTCGCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCAAGTGGTAACTGTAAAATTTGTATCATTCCAGAAAACACTATTTTTG</left_flank>
        <right_flank>GATTTCGCTGATTTTGCAGATTTGTGAACATTTAGGAGTTATCACTGTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTACAGTTATAATACCAAGTTGAAACTGTAGAAGTTTCATTATTCTAATTGGAAATATCTTTGGAGATTTTGCAAAGATTTTTGTTAGCGAATATTTGGTTATCACTGTTTCACAACATGTTTTTGTGCAGGAGCCAGTTTTAAATTAGATAAACATATGTTGAAAAGAATAATCTGCTGAGAAACAATTTTTTTCGAAATTCCGTTCATATACGCCCTTCGAAAAGTTGAACTTGTGGACCTTATGCTGGAGATGCAGCGCCGCTACCAGCTGAGCTACGGTGGCGCAAGCTGAGGTGGCCCGATAGCAACGCGCTGTGTGAGCAGCTCACTGAGCACTAAACACTGTACACCGTCGCGTACTGTAGCTTCAAAAAAACTCTGAAAATTTTCCTGCCATGTACAACTCTCTTCCATTGTTTCTCAAAATTATGCTACAATCATAATACCAAGTGGTAACTGTAAAATTTGTATCATTCCAGAAAACACTATTTTTGAGATTTCGCTGATTTTGCAGATTTGTGAACATTTAGGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAATTCGAAATTGAAAATTTTCAAGAACTACTGGGCACCTAGTTAAACGTAAAATATTCCAAAGAACCACTTGTTAGTATGCGGAAGAACAAGAAAAAAACAAAGATAAACGACCAGATCATTCTGGAAGTATTAGAATGAAGAGGAGACCAATAAATCAGTGAGCTCCACCCTTGATCACCTAGCCGCATGTTTTTGTGTTATTCGACCCACCCTGCCATCTCTCTTTTTCCACTCATTTTGCGCCCTGATTTCTCACTCACTCATTTGTCAGTCGGCAGTTGTTCATCATCACAATGTTGTGACAAGGTGCCGAGAAGAAGACACACATACACATAACACTTTTCTGTTTAAAAATCCCAGAGAAAA</canonical>
            <polymorphic>TTTTACAGTTATAATACCAAGTTGAAACTGTAGAAGTTTCATTATTCTAATTGGAAATATCTTTGGAGATTTTGCAAAGATTTTTGTTAGCGAATATTTGGTTATCACTGTTTCACAACATGTTTTTGTGCAGGAGCCAGTTTTAAATTAGATAAACATATGTTGAAAAGAATAATCTGCTGAGAAACAATTTTTTTCGAAATTCCGTTCATATACGCCCTTCGAAAAGTTGAACTTGTGGACCTTATGCTGGAGATGCAGCGCCGCTACCAGCTGAGCTACGGTGGCGCAAGCTGAGGTGGCCCGATAGCAACGCGCTGTGTGAGCAGCTCACTGAGCACTAAACACTGTACACCGTCGCGTACTGTAGCTTCAAAAAAACTCTGAAAATTTTCCTGCCATGTACAACTCTCTTCCATTGTTTCTCAAAATTATGCTACAATCATAATACCAAGTGGTAACTGTAAAATTTGTATCATTCCAGAAAACACTATTTTTGWGATTTCGCTGATTTTGCAGATTTGTGAACATTTAGGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAATTCGAAATTGAAAATTTTCAAGAACTACTGGGCACCTAGTTAAACGTAAAATATTCCAAAGAACCACTTGTTAGTATGCGGAAGAACAAGAAAAAAACAAAGATAAACGACCAGATCATTCTGGAAGTATTAGAATGAAGAGGAGACCAATAAATCAGTGAGCTCCACCCTTGATCACCTAGCCGCATGTTTTTGTGTTATTCGACCCACCCTGCCATCTCTCTTTTTCCACTCATTTTGCGCCCTGATTTCTCACTCACTCATTTGTCAGTCGGCAGTTGTTCATCATCACAATGTTGTGACAAGGTGCCGAGAAGAAGACACACATACACATAACACTTTTCTGTTTAAAAATCCCAGAGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGTACAACTCTCTTCCATTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTTCAGAAAGTTTGCATTGA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>CATGTACAACTCTCTTCCATTGTTTCTCAAAATTATGCTACAATCATAATACCAAGTGGTAACTGTAAAATTTGTATCATTCCAGAAAACACTATTTTTGAGATTTCGCTGATTTTGCAGATTTGTGAACATTTAGGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAAT</canonical_amplicon>
		<polymorphic_amplicon>CATGTACAACTCTCTTCCATTGTTTCTCAAAATTATGCTACAATCATAATACCAAGTGGTAACTGTAAAATTTGTATCATTCCAGAAAACACTATTTTTGWGATTTCGCTGATTTTGCAGATTTGTGAACATTTAGGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28585</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>57135</contig_pos>
        <strand>+</strand>
        <context>AAACTTCAAA[C/T]TGAWTGGGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAA</left_flank>
        <right_flank>TGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTAGCGAATATTTGGTTATCACTGTTTCACAACATGTTTTTGTGCAGGAGCCAGTTTTAAATTAGATAAACATATGTTGAAAAGAATAATCTGCTGAGAAACAATTTTTTTCGAAATTCCGTTCATATACGCCCTTCGAAAAGTTGAACTTGTGGACCTTATGCTGGAGATGCAGCGCCGCTACCAGCTGAGCTACGGTGGCGCAAGCTGAGGTGGCCCGATAGCAACGCGCTGTGTGAGCAGCTCACTGAGCACTAAACACTGTACACCGTCGCGTACTGTAGCTTCAAAAAAACTCTGAAAATTTTCCTGCCATGTACAACTCTCTTCCATTGTTTCTCAAAATTATGCTACAATCATAATACCAAGTGGTAACTGTAAAATTTGTATCATTCCAGAAAACACTATTTTTGAGATTTCGCTGATTTTGCAGATTTGTGAACATTTAGGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAATTCGAAATTGAAAATTTTCAAGAACTACTGGGCACCTAGTTAAACGTAAAATATTCCAAAGAACCACTTGTTAGTATGCGGAAGAACAAGAAAAAAACAAAGATAAACGACCAGATCATTCTGGAAGTATTAGAATGAAGAGGAGACCAATAAATCAGTGAGCTCCACCCTTGATCACCTAGCCGCATGTTTTTGTGTTATTCGACCCACCCTGCCATCTCTCTTTTTCCACTCATTTTGCGCCCTGATTTCTCACTCACTCATTTGTCAGTCGGCAGTTGTTCATCATCACAATGTTGTGACAAGGTGCCGAGAAGAAGACACACATACACATAACACTTTTCTGTTTAAAAATCCCAGAGAAAATACAAGGATATTTCCGATTGATGGGATAGGGAGGATGAATGACAGATTGAGGGGCACAGGTTGGATCGTGAGGGTTGGCAGGTAA</canonical>
            <polymorphic>GTTAGCGAATATTTGGTTATCACTGTTTCACAACATGTTTTTGTGCAGGAGCCAGTTTTAAATTAGATAAACATATGTTGAAAAGAATAATCTGCTGAGAAACAATTTTTTTCGAAATTCCGTTCATATACGCCCTTCGAAAAGTTGAACTTGTGGACCTTATGCTGGAGATGCAGCGCCGCTACCAGCTGAGCTACGGTGGCGCAAGCTGAGGTGGCCCGATAGCAACGCGCTGTGTGAGCAGCTCACTGAGCACTAAACACTGTACACCGTCGCGTACTGTAGCTTCAAAAAAACTCTGAAAATTTTCCTGCCATGTACAACTCTCTTCCATTGTTTCTCAAAATTATGCTACAATCATAATACCAAGTGGTAACTGTAAAATTTGTATCATTCCAGAAAACACTATTTTTGAGATTTCGCTGATTTTGCAGATTTGTGAACATTTAGGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAAYTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAATTCGAAATTGAAAATTTTCAAGAACTACTGGGCACCTAGTTAAACGTAAAATATTCCAAAGAACCACTTGTTAGTATGCGGAAGAACAAGAAAAAAACAAAGATAAACGACCAGATCATTCTGGAAGTATTAGAATGAAGAGGAGACCAATAAATCAGTGAGCTCCACCCTTGATCACCTAGCCGCATGTTTTTGTGTTATTCGACCCACCCTGCCATCTCTCTTTTTCCACTCATTTTGCGCCCTGATTTCTCACTCACTCATTTGTCAGTCGGCAGTTGTTCATCATCACAATGTTGTGACAAGGTGCCGAGAAGAAGACACACATACACATAACACTTTTCTGTTTAAAAATCCCAGAGAAAATACAAGGATATTTCCGATTGATGGGATAGGGAGGATGAATGACAGATTGAGGGGCACAGGTTGGATCGTGAGGGTTGGCAGGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGATTTGTGAACATTTAGGAGT</pcr_primer_p1>
		<pcr_primer_p2>ATACTTCCAGAATGATCTGGTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGATTTGTGAACATTTAGGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAATTCGAAATTGAAAATTTTCAAGAACTACTGGGCACCTAGTTAAACGTAAAATATTCCAAAGAACCACTTGTTAGTATGCGGAAGAACAAGAAAAAAACAAAGATAAACGACCAGATCATTCTGGAAGTAT</canonical_amplicon>
		<polymorphic_amplicon>CAGATTTGTGAACATTTAGGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAAYTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAATTCGAAATTGAAAATTTTCAAGAACTACTGGGCACCTAGTTAAACGTAAAATATTCCAAAGAACCACTTGTTAGTATGCGGAAGAACAAGAAAAAAACAAAGATAAACGACCAGATCATTCTGGAAGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28586</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>57139</contig_pos>
        <strand>+</strand>
        <context>TTCAAAYTGA[A/T]TGGGTTTACG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGA</left_flank>
        <right_flank>TGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAATTCGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGAATATTTGGTTATCACTGTTTCACAACATGTTTTTGTGCAGGAGCCAGTTTTAAATTAGATAAACATATGTTGAAAAGAATAATCTGCTGAGAAACAATTTTTTTCGAAATTCCGTTCATATACGCCCTTCGAAAAGTTGAACTTGTGGACCTTATGCTGGAGATGCAGCGCCGCTACCAGCTGAGCTACGGTGGCGCAAGCTGAGGTGGCCCGATAGCAACGCGCTGTGTGAGCAGCTCACTGAGCACTAAACACTGTACACCGTCGCGTACTGTAGCTTCAAAAAAACTCTGAAAATTTTCCTGCCATGTACAACTCTCTTCCATTGTTTCTCAAAATTATGCTACAATCATAATACCAAGTGGTAACTGTAAAATTTGTATCATTCCAGAAAACACTATTTTTGAGATTTCGCTGATTTTGCAGATTTGTGAACATTTAGGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAATTCGAAATTGAAAATTTTCAAGAACTACTGGGCACCTAGTTAAACGTAAAATATTCCAAAGAACCACTTGTTAGTATGCGGAAGAACAAGAAAAAAACAAAGATAAACGACCAGATCATTCTGGAAGTATTAGAATGAAGAGGAGACCAATAAATCAGTGAGCTCCACCCTTGATCACCTAGCCGCATGTTTTTGTGTTATTCGACCCACCCTGCCATCTCTCTTTTTCCACTCATTTTGCGCCCTGATTTCTCACTCACTCATTTGTCAGTCGGCAGTTGTTCATCATCACAATGTTGTGACAAGGTGCCGAGAAGAAGACACACATACACATAACACTTTTCTGTTTAAAAATCCCAGAGAAAATACAAGGATATTTCCGATTGATGGGATAGGGAGGATGAATGACAGATTGAGGGGCACAGGTTGGATCGTGAGGGTTGGCAGGTAATGAA</canonical>
            <polymorphic>GCGAATATTTGGTTATCACTGTTTCACAACATGTTTTTGTGCAGGAGCCAGTTTTAAATTAGATAAACATATGTTGAAAAGAATAATCTGCTGAGAAACAATTTTTTTCGAAATTCCGTTCATATACGCCCTTCGAAAAGTTGAACTTGTGGACCTTATGCTGGAGATGCAGCGCCGCTACCAGCTGAGCTACGGTGGCGCAAGCTGAGGTGGCCCGATAGCAACGCGCTGTGTGAGCAGCTCACTGAGCACTAAACACTGTACACCGTCGCGTACTGTAGCTTCAAAAAAACTCTGAAAATTTTCCTGCCATGTACAACTCTCTTCCATTGTTTCTCAAAATTATGCTACAATCATAATACCAAGTGGTAACTGTAAAATTTGTATCATTCCAGAAAACACTATTTTTGAGATTTCGCTGATTTTGCAGATTTGTGAACATTTAGGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGAWTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAATTCGAAATTGAAAATTTTCAAGAACTACTGGGCACCTAGTTAAACGTAAAATATTCCAAAGAACCACTTGTTAGTATGCGGAAGAACAAGAAAAAAACAAAGATAAACGACCAGATCATTCTGGAAGTATTAGAATGAAGAGGAGACCAATAAATCAGTGAGCTCCACCCTTGATCACCTAGCCGCATGTTTTTGTGTTATTCGACCCACCCTGCCATCTCTCTTTTTCCACTCATTTTGCGCCCTGATTTCTCACTCACTCATTTGTCAGTCGGCAGTTGTTCATCATCACAATGTTGTGACAAGGTGCCGAGAAGAAGACACACATACACATAACACTTTTCTGTTTAAAAATCCCAGAGAAAATACAAGGATATTTCCGATTGATGGGATAGGGAGGATGAATGACAGATTGAGGGGCACAGGTTGGATCGTGAGGGTTGGCAGGTAATGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGATTTGTGAACATTTAGGAGT</pcr_primer_p1>
		<pcr_primer_p2>ATACTTCCAGAATGATCTGGTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGATTTGTGAACATTTAGGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAATTCGAAATTGAAAATTTTCAAGAACTACTGGGCACCTAGTTAAACGTAAAATATTCCAAAGAACCACTTGTTAGTATGCGGAAGAACAAGAAAAAAACAAAGATAAACGACCAGATCATTCTGGAAGTAT</canonical_amplicon>
		<polymorphic_amplicon>CAGATTTGTGAACATTTAGGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGAWTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAATTCGAAATTGAAAATTTTCAAGAACTACTGGGCACCTAGTTAAACGTAAAATATTCCAAAGAACCACTTGTTAGTATGCGGAAGAACAAGAAAAAAACAAAGATAAACGACCAGATCATTCTGGAAGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28587</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>57238</contig_pos>
        <strand>+</strand>
        <context>ACGTAAAATA[C/T]TCCAAAGAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAATTGAAAATTTTCAAGAACTACTGGGCACCTAGTTAAACGTAAAATA</left_flank>
        <right_flank>TCCAAAGAACCACTTGTTAGTATGCGGAAGAACAAGAAAAAAACAAAGAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTTTTCGAAATTCCGTTCATATACGCCCTTCGAAAAGTTGAACTTGTGGACCTTATGCTGGAGATGCAGCGCCGCTACCAGCTGAGCTACGGTGGCGCAAGCTGAGGTGGCCCGATAGCAACGCGCTGTGTGAGCAGCTCACTGAGCACTAAACACTGTACACCGTCGCGTACTGTAGCTTCAAAAAAACTCTGAAAATTTTCCTGCCATGTACAACTCTCTTCCATTGTTTCTCAAAATTATGCTACAATCATAATACCAAGTGGTAACTGTAAAATTTGTATCATTCCAGAAAACACTATTTTTGAGATTTCGCTGATTTTGCAGATTTGTGAACATTTAGGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAATTCGAAATTGAAAATTTTCAAGAACTACTGGGCACCTAGTTAAACGTAAAATATTCCAAAGAACCACTTGTTAGTATGCGGAAGAACAAGAAAAAAACAAAGATAAACGACCAGATCATTCTGGAAGTATTAGAATGAAGAGGAGACCAATAAATCAGTGAGCTCCACCCTTGATCACCTAGCCGCATGTTTTTGTGTTATTCGACCCACCCTGCCATCTCTCTTTTTCCACTCATTTTGCGCCCTGATTTCTCACTCACTCATTTGTCAGTCGGCAGTTGTTCATCATCACAATGTTGTGACAAGGTGCCGAGAAGAAGACACACATACACATAACACTTTTCTGTTTAAAAATCCCAGAGAAAATACAAGGATATTTCCGATTGATGGGATAGGGAGGATGAATGACAGATTGAGGGGCACAGGTTGGATCGTGAGGGTTGGCAGGTAATGAAAAGTGTGGACTTTTTTCAAAAAAGTCCACACTTTTTTGATCTTTTTTTGAAAAACCTTTTTTGAAAACTTTTTTTAAACTTTTTTTTTTTGAAAAAGTT</canonical>
            <polymorphic>AATTTTTTTCGAAATTCCGTTCATATACGCCCTTCGAAAAGTTGAACTTGTGGACCTTATGCTGGAGATGCAGCGCCGCTACCAGCTGAGCTACGGTGGCGCAAGCTGAGGTGGCCCGATAGCAACGCGCTGTGTGAGCAGCTCACTGAGCACTAAACACTGTACACCGTCGCGTACTGTAGCTTCAAAAAAACTCTGAAAATTTTCCTGCCATGTACAACTCTCTTCCATTGTTTCTCAAAATTATGCTACAATCATAATACCAAGTGGTAACTGTAAAATTTGTATCATTCCAGAAAACACTATTTTTGAGATTTCGCTGATTTTGCAGATTTGTGAACATTTAGGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAATTCGAAATTGAAAATTTTCAAGAACTACTGGGCACCTAGTTAAACGTAAAATAYTCCAAAGAACCACTTGTTAGTATGCGGAAGAACAAGAAAAAAACAAAGATAAACGACCAGATCATTCTGGAAGTATTAGAATGAAGAGGAGACCAATAAATCAGTGAGCTCCACCCTTGATCACCTAGCCGCATGTTTTTGTGTTATTCGACCCACCCTGCCATCTCTCTTTTTCCACTCATTTTGCGCCCTGATTTCTCACTCACTCATTTGTCAGTCGGCAGTTGTTCATCATCACAATGTTGTGACAAGGTGCCGAGAAGAAGACACACATACACATAACACTTTTCTGTTTAAAAATCCCAGAGAAAATACAAGGATATTTCCGATTGATGGGATAGGGAGGATGAATGACAGATTGAGGGGCACAGGTTGGATCGTGAGGGTTGGCAGGTAATGAAAAGTGTGGACTTTTTTCAAAAAAGTCCACACTTTTTTGATCTTTTTTTGAAAAACCTTTTTTGAAAACTTTTTTTAAACTTTTTTTTTTTGAAAAAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTGTTTCCTAATCAGGTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTGATTTATTGGTCTCCTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAATTCGAAATTGAAAATTTTCAAGAACTACTGGGCACCTAGTTAAACGTAAAATATTCCAAAGAACCACTTGTTAGTATGCGGAAGAACAAGAAAAAAACAAAGATAAACGACCAGATCATTCTGGAAGTATTAGAATGAAGAGGAGACCAATAAATCAGT</canonical_amplicon>
		<polymorphic_amplicon>ACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAATTCGAAATTGAAAATTTTCAAGAACTACTGGGCACCTAGTTAAACGTAAAATAYTCCAAAGAACCACTTGTTAGTATGCGGAAGAACAAGAAAAAAACAAAGATAAACGACCAGATCATTCTGGAAGTATTAGAATGAAGAGGAGACCAATAAATCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28588</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>57251</contig_pos>
        <strand>+</strand>
        <context>CAAAGAACCA[C/G]TTGTTAGTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCAAGAACTACTGGGCACCTAGTTAAACGTAAAATATTCCAAAGAACCA</left_flank>
        <right_flank>TTGTTAGTATGCGGAAGAACAAGAAAAAAACAAAGATAAACGACCAGATC</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCCGTTCATATACGCCCTTCGAAAAGTTGAACTTGTGGACCTTATGCTGGAGATGCAGCGCCGCTACCAGCTGAGCTACGGTGGCGCAAGCTGAGGTGGCCCGATAGCAACGCGCTGTGTGAGCAGCTCACTGAGCACTAAACACTGTACACCGTCGCGTACTGTAGCTTCAAAAAAACTCTGAAAATTTTCCTGCCATGTACAACTCTCTTCCATTGTTTCTCAAAATTATGCTACAATCATAATACCAAGTGGTAACTGTAAAATTTGTATCATTCCAGAAAACACTATTTTTGAGATTTCGCTGATTTTGCAGATTTGTGAACATTTAGGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAATTCGAAATTGAAAATTTTCAAGAACTACTGGGCACCTAGTTAAACGTAAAATATTCCAAAGAACCACTTGTTAGTATGCGGAAGAACAAGAAAAAAACAAAGATAAACGACCAGATCATTCTGGAAGTATTAGAATGAAGAGGAGACCAATAAATCAGTGAGCTCCACCCTTGATCACCTAGCCGCATGTTTTTGTGTTATTCGACCCACCCTGCCATCTCTCTTTTTCCACTCATTTTGCGCCCTGATTTCTCACTCACTCATTTGTCAGTCGGCAGTTGTTCATCATCACAATGTTGTGACAAGGTGCCGAGAAGAAGACACACATACACATAACACTTTTCTGTTTAAAAATCCCAGAGAAAATACAAGGATATTTCCGATTGATGGGATAGGGAGGATGAATGACAGATTGAGGGGCACAGGTTGGATCGTGAGGGTTGGCAGGTAATGAAAAGTGTGGACTTTTTTCAAAAAAGTCCACACTTTTTTGATCTTTTTTTGAAAAACCTTTTTTGAAAACTTTTTTTAAACTTTTTTTTTTTGAAAAAGTTTTTGGTCATATTT</canonical>
            <polymorphic>ATTCCGTTCATATACGCCCTTCGAAAAGTTGAACTTGTGGACCTTATGCTGGAGATGCAGCGCCGCTACCAGCTGAGCTACGGTGGCGCAAGCTGAGGTGGCCCGATAGCAACGCGCTGTGTGAGCAGCTCACTGAGCACTAAACACTGTACACCGTCGCGTACTGTAGCTTCAAAAAAACTCTGAAAATTTTCCTGCCATGTACAACTCTCTTCCATTGTTTCTCAAAATTATGCTACAATCATAATACCAAGTGGTAACTGTAAAATTTGTATCATTCCAGAAAACACTATTTTTGAGATTTCGCTGATTTTGCAGATTTGTGAACATTTAGGAGTTATCACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAATTCGAAATTGAAAATTTTCAAGAACTACTGGGCACCTAGTTAAACGTAAAATATTCCAAAGAACCASTTGTTAGTATGCGGAAGAACAAGAAAAAAACAAAGATAAACGACCAGATCATTCTGGAAGTATTAGAATGAAGAGGAGACCAATAAATCAGTGAGCTCCACCCTTGATCACCTAGCCGCATGTTTTTGTGTTATTCGACCCACCCTGCCATCTCTCTTTTTCCACTCATTTTGCGCCCTGATTTCTCACTCACTCATTTGTCAGTCGGCAGTTGTTCATCATCACAATGTTGTGACAAGGTGCCGAGAAGAAGACACACATACACATAACACTTTTCTGTTTAAAAATCCCAGAGAAAATACAAGGATATTTCCGATTGATGGGATAGGGAGGATGAATGACAGATTGAGGGGCACAGGTTGGATCGTGAGGGTTGGCAGGTAATGAAAAGTGTGGACTTTTTTCAAAAAAGTCCACACTTTTTTGATCTTTTTTTGAAAAACCTTTTTTGAAAACTTTTTTTAAACTTTTTTTTTTTGAAAAAGTTTTTGGTCATATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>103 94 84 82 67 57 46 39 36 33 32 32 24 24 22 21 21 20 18 15 14 14 12 10 10 9 8 7 7 7 7 7 6 4 2 2 2 2</canonical_bands>
                <polymorphic_bands>126 103 84 82 67 57 46 39 36 33 32 24 24 22 21 21 20 18 15 14 14 12 10 10 9 8 7 7 7 7 7 6 4 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTGTTTCCTAATCAGGTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTGATTTATTGGTCTCCTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAATTCGAAATTGAAAATTTTCAAGAACTACTGGGCACCTAGTTAAACGTAAAATATTCCAAAGAACCACTTGTTAGTATGCGGAAGAACAAGAAAAAAACAAAGATAAACGACCAGATCATTCTGGAAGTATTAGAATGAAGAGGAGACCAATAAATCAGT</canonical_amplicon>
		<polymorphic_amplicon>ACTGTTTCCTAATCAGGTCTTTTCCCGGAACAAACTTCAAACTGATTGGGTTTACGTGGAACTTTTGTTTTTCAATGCAAACTTTCTGAAATTCGAAATTGAAAATTTTCAAGAACTACTGGGCACCTAGTTAAACGTAAAATATTCCAAAGAACCASTTGTTAGTATGCGGAAGAACAAGAAAAAAACAAAGATAAACGACCAGATCATTCTGGAAGTATTAGAATGAAGAGGAGACCAATAAATCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28589</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>58685</contig_pos>
        <strand></strand>
        <context>gacaaaaaag[A/T]agayaaTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTAGGGAGAGAAAAGAACAAAAAGAGCAAAAAAAGAAAGACAAAAAAG</left_flank>
        <right_flank>AGAAAATTCACTTTCCAGGTATAAGTTCGTTATCAATTGATATTTTTTTG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGCATTTCACTAATGTATATTCACCACTTTGAATAAATATTAATTTTTGAGTTGGATAGACTTGCCTAACTTGAATAATTTCATAGCAAAGTTTTGAGATTCTACCTGCAATGATCAATGCAGTAACCATTTCAACTATAGATTTACAAGCTAGAACAGTGAAAAAATGTCATTCATTACCAAAAAGACAGAATCCTATAGCAAGTTTTCTAATCGTCTTATGAAAAATGTGTATATACGAAATGTATATTTTTGTCGCTCTTATCAGTATCAGTCGTTTTGTTTCTCCTCAAAATATACTATCAAAAACAAGAGAACAACTGAAAATAAAACAAATGAGAGCTTGAAATAGAGTCGAAAAATGAAGAAATGAAAATTGACACAAATTTTGAAAGATAACGAAAAATGATTTGGCGTTGTAGAAACAAGATTGATTGGTGTGGGACTTTTTAGGGAGAGAAAAGAACAAAAAGAGCAAAAAAAGAAAGACAAAAAAGAAGAAAATTCACTTTCCAGGTATAAGTTCGTTATCAATTGATATTTTTTTGAGTGATAAGAAGAACAAAAAGAGCAGTCGACATGACTTTATATTGTAAAACTATGATGATTGAACTTCACTGAAAAAGGAAAAGCATTGGAAAATCGTCGAAATCAAAAATATGAAACTGAATCACCGAGAAAAAAGGATTTTTTAAAAGTTTCAGTTTCATGTATTTCTGGAACCCTAATTTTTATTTTCAAAAAATGTTATATTTGTCCCAGGACCCAAGACCCAGGACACCCGGATCCAGGACACCCGGGTTAAGGTCACCCGGATGTGGGACCCAGGTCACCACCCGGATCCAGGTCACCGGGATCTAGGTCACCCGGGCCCACGACCCAGATCACCCGGACCCACGACCCAGGTCACCCGGATCCAAATCACCCGGATCCAGGTCACCCGGATCCAGGACCCATGTCACCAGGATCTAGGTCACCCGGATCTAGGTCACCCGGAT</canonical>
            <polymorphic>ATAGCATTTCACTAATGTATATTCACCACTTTGAATAAATATTAATTTTTGAGTTGGATAGACTTGCCTAACTTGAATAATTTCATAGCAAAGTTTTGAGATTCTACCTGCAATGATCAATGCAGTAACCATTTCAACTATAGATTTACAAGCTAGAACAGTGAAAAAATGTCATTCATTACCAAAAAGACAGAATCCTATAGCAAGTTTTCTAATCGTCTTATGAAAAATGTGTATATACGAAATGTATATTTTTGTCGCTCTTATCAGTATCAGTCGTTTTGTTTCTCCTCAAAATATACTATCAAAAACAAGAGAACAACTGAAAATAAAACAAATGAGAGCTTGAAATAGAGTCGAAAAATGAAGAAATGAAAATTGACACAAATTTTGAAAGATAACGAAAAATGATTTGGCGTTGTAGAAACAAGATTGATTGGTGTGGGACTTTTTAGGGAGAGAAAAGAACAAAAAGAGCAAAAAAAGAAAGACAAAAAAGWAGAAAATTCACTTTCCAGGTATAAGTTCGTTATCAATTGATATTTTTTTGAGTGATAAGAAGAACAAAAAGAGCAGTCGACATGACTTTATATTGTAAAACTATGATGATTGAACTTCACTGAAAAAGGAAAAGCATTGGAAAATCGTCGAAATCAAAAATATGAAACTGAATCACCGAGAAAAAAGGATTTTTTAAAAGTTTCAGTTTCATGTATTTCTGGAACCCTAATTTTTATTTTCAAAAAATGTTATATTTGTCCCAGGACCCAAGACCCAGGACACCCGGATCCAGGACACCCGGGTTAAGGTCACCCGGATGTGGGACCCAGGTCACCACCCGGATCCAGGTCACCGGGATCTAGGTCACCCGGGCCCACGACCCAGATCACCCGGACCCACGACCCAGGTCACCCGGATCCAAATCACCCGGATCCAGGTCACCCGGATCCAGGACCCATGTCACCAGGATCTAGGTCACCCGGATCTAGGTCACCCGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTGACACAAATTTTGAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCAGTGAAGTTCAATCATCATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATTGACACAAATTTTGAAAGATAACGAAAAATGATTTGGCGTTGTAGAAACAAGATTGATTGGTGTGGGACTTTTTAGGGAGAGAAAAGAACAAAAAGAGCAAAAAAAGAAAGACAAAAAAGAAGAAAATTCACTTTCCAGGTATAAGTTCGTTATCAATTGATATTTTTTTGAGTGATAAGAAGAACAAAAAGAGCAGTCGACATGACTTTATATTGTAAAACTATGATGATTGAACTTCACTGAA</canonical_amplicon>
		<polymorphic_amplicon>AAAATTGACACAAATTTTGAAAGATAACGAAAAATGATTTGGCGTTGTAGAAACAAGATTGATTGGTGTGGGACTTTTTAGGGAGAGAAAAGAACAAAAAGAGCAAAAAAAGAAAGACAAAAAAGWAGAAAATTCACTTTCCAGGTATAAGTTCGTTATCAATTGATATTTTTTTGAGTGATAAGAAGAACAAAAAGAGCAGTCGACATGACTTTATATTGTAAAACTATGATGATTGAACTTCACTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28590</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>58689</contig_pos>
        <strand>+</strand>
        <context>aaaaagwaga[C/T]aaTTCACTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGGAGAGAAAAGAACAAAAAGAGCAAAAAAAGAAAGACAAAAAAGAAGA</left_flank>
        <right_flank>AATTCACTTTCCAGGTATAAGTTCGTTATCAATTGATATTTTTTTGAGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTCACTAATGTATATTCACCACTTTGAATAAATATTAATTTTTGAGTTGGATAGACTTGCCTAACTTGAATAATTTCATAGCAAAGTTTTGAGATTCTACCTGCAATGATCAATGCAGTAACCATTTCAACTATAGATTTACAAGCTAGAACAGTGAAAAAATGTCATTCATTACCAAAAAGACAGAATCCTATAGCAAGTTTTCTAATCGTCTTATGAAAAATGTGTATATACGAAATGTATATTTTTGTCGCTCTTATCAGTATCAGTCGTTTTGTTTCTCCTCAAAATATACTATCAAAAACAAGAGAACAACTGAAAATAAAACAAATGAGAGCTTGAAATAGAGTCGAAAAATGAAGAAATGAAAATTGACACAAATTTTGAAAGATAACGAAAAATGATTTGGCGTTGTAGAAACAAGATTGATTGGTGTGGGACTTTTTAGGGAGAGAAAAGAACAAAAAGAGCAAAAAAAGAAAGACAAAAAAGAAGAAAATTCACTTTCCAGGTATAAGTTCGTTATCAATTGATATTTTTTTGAGTGATAAGAAGAACAAAAAGAGCAGTCGACATGACTTTATATTGTAAAACTATGATGATTGAACTTCACTGAAAAAGGAAAAGCATTGGAAAATCGTCGAAATCAAAAATATGAAACTGAATCACCGAGAAAAAAGGATTTTTTAAAAGTTTCAGTTTCATGTATTTCTGGAACCCTAATTTTTATTTTCAAAAAATGTTATATTTGTCCCAGGACCCAAGACCCAGGACACCCGGATCCAGGACACCCGGGTTAAGGTCACCCGGATGTGGGACCCAGGTCACCACCCGGATCCAGGTCACCGGGATCTAGGTCACCCGGGCCCACGACCCAGATCACCCGGACCCACGACCCAGGTCACCCGGATCCAAATCACCCGGATCCAGGTCACCCGGATCCAGGACCCATGTCACCAGGATCTAGGTCACCCGGATCTAGGTCACCCGGATCCAG</canonical>
            <polymorphic>CATTTCACTAATGTATATTCACCACTTTGAATAAATATTAATTTTTGAGTTGGATAGACTTGCCTAACTTGAATAATTTCATAGCAAAGTTTTGAGATTCTACCTGCAATGATCAATGCAGTAACCATTTCAACTATAGATTTACAAGCTAGAACAGTGAAAAAATGTCATTCATTACCAAAAAGACAGAATCCTATAGCAAGTTTTCTAATCGTCTTATGAAAAATGTGTATATACGAAATGTATATTTTTGTCGCTCTTATCAGTATCAGTCGTTTTGTTTCTCCTCAAAATATACTATCAAAAACAAGAGAACAACTGAAAATAAAACAAATGAGAGCTTGAAATAGAGTCGAAAAATGAAGAAATGAAAATTGACACAAATTTTGAAAGATAACGAAAAATGATTTGGCGTTGTAGAAACAAGATTGATTGGTGTGGGACTTTTTAGGGAGAGAAAAGAACAAAAAGAGCAAAAAAAGAAAGACAAAAAAGAAGAYAATTCACTTTCCAGGTATAAGTTCGTTATCAATTGATATTTTTTTGAGTGATAAGAAGAACAAAAAGAGCAGTCGACATGACTTTATATTGTAAAACTATGATGATTGAACTTCACTGAAAAAGGAAAAGCATTGGAAAATCGTCGAAATCAAAAATATGAAACTGAATCACCGAGAAAAAAGGATTTTTTAAAAGTTTCAGTTTCATGTATTTCTGGAACCCTAATTTTTATTTTCAAAAAATGTTATATTTGTCCCAGGACCCAAGACCCAGGACACCCGGATCCAGGACACCCGGGTTAAGGTCACCCGGATGTGGGACCCAGGTCACCACCCGGATCCAGGTCACCGGGATCTAGGTCACCCGGGCCCACGACCCAGATCACCCGGACCCACGACCCAGGTCACCCGGATCCAAATCACCCGGATCCAGGTCACCCGGATCCAGGACCCATGTCACCAGGATCTAGGTCACCCGGATCTAGGTCACCCGGATCCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>500 382 118</canonical_bands>
                <polymorphic_bands>618 382</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTGACACAAATTTTGAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCAGTGAAGTTCAATCATCATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATTGACACAAATTTTGAAAGATAACGAAAAATGATTTGGCGTTGTAGAAACAAGATTGATTGGTGTGGGACTTTTTAGGGAGAGAAAAGAACAAAAAGAGCAAAAAAAGAAAGACAAAAAAGAAGAAAATTCACTTTCCAGGTATAAGTTCGTTATCAATTGATATTTTTTTGAGTGATAAGAAGAACAAAAAGAGCAGTCGACATGACTTTATATTGTAAAACTATGATGATTGAACTTCACTGAA</canonical_amplicon>
		<polymorphic_amplicon>AAAATTGACACAAATTTTGAAAGATAACGAAAAATGATTTGGCGTTGTAGAAACAAGATTGATTGGTGTGGGACTTTTTAGGGAGAGAAAAGAACAAAAAGAGCAAAAAAAGAAAGACAAAAAAGAAGAYAATTCACTTTCCAGGTATAAGTTCGTTATCAATTGATATTTTTTTGAGTGATAAGAAGAACAAAAAGAGCAGTCGACATGACTTTATATTGTAAAACTATGATGATTGAACTTCACTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28591</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>58704</contig_pos>
        <strand></strand>
        <context>CACTTTCCAG[G/T]TATAAGTTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAAAAAGAGCAAAAAAAGAAAGACAAAAAAGAAGAAAATTCACTTTCCAG</left_flank>
        <right_flank>TATAAGTTCGTTATCAATTGATATTTTTTTGAGTGATAAGAAGAACAAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTCACCACTTTGAATAAATATTAATTTTTGAGTTGGATAGACTTGCCTAACTTGAATAATTTCATAGCAAAGTTTTGAGATTCTACCTGCAATGATCAATGCAGTAACCATTTCAACTATAGATTTACAAGCTAGAACAGTGAAAAAATGTCATTCATTACCAAAAAGACAGAATCCTATAGCAAGTTTTCTAATCGTCTTATGAAAAATGTGTATATACGAAATGTATATTTTTGTCGCTCTTATCAGTATCAGTCGTTTTGTTTCTCCTCAAAATATACTATCAAAAACAAGAGAACAACTGAAAATAAAACAAATGAGAGCTTGAAATAGAGTCGAAAAATGAAGAAATGAAAATTGACACAAATTTTGAAAGATAACGAAAAATGATTTGGCGTTGTAGAAACAAGATTGATTGGTGTGGGACTTTTTAGGGAGAGAAAAGAACAAAAAGAGCAAAAAAAGAAAGACAAAAAAGAAGAAAATTCACTTTCCAGGTATAAGTTCGTTATCAATTGATATTTTTTTGAGTGATAAGAAGAACAAAAAGAGCAGTCGACATGACTTTATATTGTAAAACTATGATGATTGAACTTCACTGAAAAAGGAAAAGCATTGGAAAATCGTCGAAATCAAAAATATGAAACTGAATCACCGAGAAAAAAGGATTTTTTAAAAGTTTCAGTTTCATGTATTTCTGGAACCCTAATTTTTATTTTCAAAAAATGTTATATTTGTCCCAGGACCCAAGACCCAGGACACCCGGATCCAGGACACCCGGGTTAAGGTCACCCGGATGTGGGACCCAGGTCACCACCCGGATCCAGGTCACCGGGATCTAGGTCACCCGGGCCCACGACCCAGATCACCCGGACCCACGACCCAGGTCACCCGGATCCAAATCACCCGGATCCAGGTCACCCGGATCCAGGACCCATGTCACCAGGATCTAGGTCACCCGGATCTAGGTCACCCGGATCCAGGTCACACGGATTCAG</canonical>
            <polymorphic>TATTCACCACTTTGAATAAATATTAATTTTTGAGTTGGATAGACTTGCCTAACTTGAATAATTTCATAGCAAAGTTTTGAGATTCTACCTGCAATGATCAATGCAGTAACCATTTCAACTATAGATTTACAAGCTAGAACAGTGAAAAAATGTCATTCATTACCAAAAAGACAGAATCCTATAGCAAGTTTTCTAATCGTCTTATGAAAAATGTGTATATACGAAATGTATATTTTTGTCGCTCTTATCAGTATCAGTCGTTTTGTTTCTCCTCAAAATATACTATCAAAAACAAGAGAACAACTGAAAATAAAACAAATGAGAGCTTGAAATAGAGTCGAAAAATGAAGAAATGAAAATTGACACAAATTTTGAAAGATAACGAAAAATGATTTGGCGTTGTAGAAACAAGATTGATTGGTGTGGGACTTTTTAGGGAGAGAAAAGAACAAAAAGAGCAAAAAAAGAAAGACAAAAAAGAAGAAAATTCACTTTCCAGKTATAAGTTCGTTATCAATTGATATTTTTTTGAGTGATAAGAAGAACAAAAAGAGCAGTCGACATGACTTTATATTGTAAAACTATGATGATTGAACTTCACTGAAAAAGGAAAAGCATTGGAAAATCGTCGAAATCAAAAATATGAAACTGAATCACCGAGAAAAAAGGATTTTTTAAAAGTTTCAGTTTCATGTATTTCTGGAACCCTAATTTTTATTTTCAAAAAATGTTATATTTGTCCCAGGACCCAAGACCCAGGACACCCGGATCCAGGACACCCGGGTTAAGGTCACCCGGATGTGGGACCCAGGTCACCACCCGGATCCAGGTCACCGGGATCTAGGTCACCCGGGCCCACGACCCAGATCACCCGGACCCACGACCCAGGTCACCCGGATCCAAATCACCCGGATCCAGGTCACCCGGATCCAGGACCCATGTCACCAGGATCTAGGTCACCCGGATCTAGGTCACCCGGATCCAGGTCACACGGATTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>497 246 22 17 15 15 15 15 15 15 14 14 14 11 8 8 8 8 8 7 7 7 7 7</canonical_bands>
                <polymorphic_bands>743 22 17 15 15 15 15 15 15 14 14 14 11 8 8 8 8 8 7 7 7 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>497 246 59 37 37 30 18 17 15 15 15 14</canonical_bands>
                <polymorphic_bands>743 59 37 37 30 18 17 15 15 15 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTGACACAAATTTTGAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCAGTGAAGTTCAATCATCATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATTGACACAAATTTTGAAAGATAACGAAAAATGATTTGGCGTTGTAGAAACAAGATTGATTGGTGTGGGACTTTTTAGGGAGAGAAAAGAACAAAAAGAGCAAAAAAAGAAAGACAAAAAAGAAGAAAATTCACTTTCCAGGTATAAGTTCGTTATCAATTGATATTTTTTTGAGTGATAAGAAGAACAAAAAGAGCAGTCGACATGACTTTATATTGTAAAACTATGATGATTGAACTTCACTGAA</canonical_amplicon>
		<polymorphic_amplicon>AAAATTGACACAAATTTTGAAAGATAACGAAAAATGATTTGGCGTTGTAGAAACAAGATTGATTGGTGTGGGACTTTTTAGGGAGAGAAAAGAACAAAAAGAGCAAAAAAAGAAAGACAAAAAAGAAGAAAATTCACTTTCCAGKTATAAGTTCGTTATCAATTGATATTTTTTTGAGTGATAAGAAGAACAAAAAGAGCAGTCGACATGACTTTATATTGTAAAACTATGATGATTGAACTTCACTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28592</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>58726</contig_pos>
        <strand></strand>
        <context>TATCAATTGA[T/C]ATTTTTTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACAAAAAAGAAGAAAATTCACTTTCCAGGTATAAGTTCGTTATCAATTGA</left_flank>
        <right_flank>ATTTTTTTGAGTGATAAGAAGAACAAAAAGAGCAGTCGACATGACTTTAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAATTTTTGAGTTGGATAGACTTGCCTAACTTGAATAATTTCATAGCAAAGTTTTGAGATTCTACCTGCAATGATCAATGCAGTAACCATTTCAACTATAGATTTACAAGCTAGAACAGTGAAAAAATGTCATTCATTACCAAAAAGACAGAATCCTATAGCAAGTTTTCTAATCGTCTTATGAAAAATGTGTATATACGAAATGTATATTTTTGTCGCTCTTATCAGTATCAGTCGTTTTGTTTCTCCTCAAAATATACTATCAAAAACAAGAGAACAACTGAAAATAAAACAAATGAGAGCTTGAAATAGAGTCGAAAAATGAAGAAATGAAAATTGACACAAATTTTGAAAGATAACGAAAAATGATTTGGCGTTGTAGAAACAAGATTGATTGGTGTGGGACTTTTTAGGGAGAGAAAAGAACAAAAAGAGCAAAAAAAGAAAGACAAAAAAGAAGAAAATTCACTTTCCAGGTATAAGTTCGTTATCAATTGATATTTTTTTGAGTGATAAGAAGAACAAAAAGAGCAGTCGACATGACTTTATATTGTAAAACTATGATGATTGAACTTCACTGAAAAAGGAAAAGCATTGGAAAATCGTCGAAATCAAAAATATGAAACTGAATCACCGAGAAAAAAGGATTTTTTAAAAGTTTCAGTTTCATGTATTTCTGGAACCCTAATTTTTATTTTCAAAAAATGTTATATTTGTCCCAGGACCCAAGACCCAGGACACCCGGATCCAGGACACCCGGGTTAAGGTCACCCGGATGTGGGACCCAGGTCACCACCCGGATCCAGGTCACCGGGATCTAGGTCACCCGGGCCCACGACCCAGATCACCCGGACCCACGACCCAGGTCACCCGGATCCAAATCACCCGGATCCAGGTCACCCGGATCCAGGACCCATGTCACCAGGATCTAGGTCACCCGGATCTAGGTCACCCGGATCCAGGTCACACGGATTCAGGTCACACGGATCCAGGACCCAG</canonical>
            <polymorphic>TTAATTTTTGAGTTGGATAGACTTGCCTAACTTGAATAATTTCATAGCAAAGTTTTGAGATTCTACCTGCAATGATCAATGCAGTAACCATTTCAACTATAGATTTACAAGCTAGAACAGTGAAAAAATGTCATTCATTACCAAAAAGACAGAATCCTATAGCAAGTTTTCTAATCGTCTTATGAAAAATGTGTATATACGAAATGTATATTTTTGTCGCTCTTATCAGTATCAGTCGTTTTGTTTCTCCTCAAAATATACTATCAAAAACAAGAGAACAACTGAAAATAAAACAAATGAGAGCTTGAAATAGAGTCGAAAAATGAAGAAATGAAAATTGACACAAATTTTGAAAGATAACGAAAAATGATTTGGCGTTGTAGAAACAAGATTGATTGGTGTGGGACTTTTTAGGGAGAGAAAAGAACAAAAAGAGCAAAAAAAGAAAGACAAAAAAGAAGAAAATTCACTTTCCAGGTATAAGTTCGTTATCAATTGAYATTTTTTTGAGTGATAAGAAGAACAAAAAGAGCAGTCGACATGACTTTATATTGTAAAACTATGATGATTGAACTTCACTGAAAAAGGAAAAGCATTGGAAAATCGTCGAAATCAAAAATATGAAACTGAATCACCGAGAAAAAAGGATTTTTTAAAAGTTTCAGTTTCATGTATTTCTGGAACCCTAATTTTTATTTTCAAAAAATGTTATATTTGTCCCAGGACCCAAGACCCAGGACACCCGGATCCAGGACACCCGGGTTAAGGTCACCCGGATGTGGGACCCAGGTCACCACCCGGATCCAGGTCACCGGGATCTAGGTCACCCGGGCCCACGACCCAGATCACCCGGACCCACGACCCAGGTCACCCGGATCCAAATCACCCGGATCCAGGTCACCCGGATCCAGGACCCATGTCACCAGGATCTAGGTCACCCGGATCTAGGTCACCCGGATCCAGGTCACACGGATTCAGGTCACACGGATCCAGGACCCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTGACACAAATTTTGAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCAGTGAAGTTCAATCATCATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATTGACACAAATTTTGAAAGATAACGAAAAATGATTTGGCGTTGTAGAAACAAGATTGATTGGTGTGGGACTTTTTAGGGAGAGAAAAGAACAAAAAGAGCAAAAAAAGAAAGACAAAAAAGAAGAAAATTCACTTTCCAGGTATAAGTTCGTTATCAATTGATATTTTTTTGAGTGATAAGAAGAACAAAAAGAGCAGTCGACATGACTTTATATTGTAAAACTATGATGATTGAACTTCACTGAA</canonical_amplicon>
		<polymorphic_amplicon>AAAATTGACACAAATTTTGAAAGATAACGAAAAATGATTTGGCGTTGTAGAAACAAGATTGATTGGTGTGGGACTTTTTAGGGAGAGAAAAGAACAAAAAGAGCAAAAAAAGAAAGACAAAAAAGAAGAAAATTCACTTTCCAGGTATAAGTTCGTTATCAATTGAYATTTTTTTGAGTGATAAGAAGAACAAAAAGAGCAGTCGACATGACTTTATATTGTAAAACTATGATGATTGAACTTCACTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28593</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>58837</contig_pos>
        <strand>+</strand>
        <context>AAATCGTCGA[A/G]ATCAAAAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATGATGATTGAACTTCACTGAAAAAGGAAAAGCATTGGAAAATCGTCGA</left_flank>
        <right_flank>ATCAAAAATATGAAACTGAATCACCGAGAAAAAAGGATTTTTTAAAAGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGAACAGTGAAAAAATGTCATTCATTACCAAAAAGACAGAATCCTATAGCAAGTTTTCTAATCGTCTTATGAAAAATGTGTATATACGAAATGTATATTTTTGTCGCTCTTATCAGTATCAGTCGTTTTGTTTCTCCTCAAAATATACTATCAAAAACAAGAGAACAACTGAAAATAAAACAAATGAGAGCTTGAAATAGAGTCGAAAAATGAAGAAATGAAAATTGACACAAATTTTGAAAGATAACGAAAAATGATTTGGCGTTGTAGAAACAAGATTGATTGGTGTGGGACTTTTTAGGGAGAGAAAAGAACAAAAAGAGCAAAAAAAGAAAGACAAAAAAGAAGAAAATTCACTTTCCAGGTATAAGTTCGTTATCAATTGATATTTTTTTGAGTGATAAGAAGAACAAAAAGAGCAGTCGACATGACTTTATATTGTAAAACTATGATGATTGAACTTCACTGAAAAAGGAAAAGCATTGGAAAATCGTCGAAATCAAAAATATGAAACTGAATCACCGAGAAAAAAGGATTTTTTAAAAGTTTCAGTTTCATGTATTTCTGGAACCCTAATTTTTATTTTCAAAAAATGTTATATTTGTCCCAGGACCCAAGACCCAGGACACCCGGATCCAGGACACCCGGGTTAAGGTCACCCGGATGTGGGACCCAGGTCACCACCCGGATCCAGGTCACCGGGATCTAGGTCACCCGGGCCCACGACCCAGATCACCCGGACCCACGACCCAGGTCACCCGGATCCAAATCACCCGGATCCAGGTCACCCGGATCCAGGACCCATGTCACCAGGATCTAGGTCACCCGGATCTAGGTCACCCGGATCCAGGTCACACGGATTCAGGTCACACGGATCCAGGACCCAGGTTACCCGGATCCAGGCCACCCGGATCCAGGTCACCCGGATACAGGCCACTCGGATCCAGGCCAACCGGATCCAGAACCCTGGACATCCGGATCCAGGACACCCGGATCCT</canonical>
            <polymorphic>CTAGAACAGTGAAAAAATGTCATTCATTACCAAAAAGACAGAATCCTATAGCAAGTTTTCTAATCGTCTTATGAAAAATGTGTATATACGAAATGTATATTTTTGTCGCTCTTATCAGTATCAGTCGTTTTGTTTCTCCTCAAAATATACTATCAAAAACAAGAGAACAACTGAAAATAAAACAAATGAGAGCTTGAAATAGAGTCGAAAAATGAAGAAATGAAAATTGACACAAATTTTGAAAGATAACGAAAAATGATTTGGCGTTGTAGAAACAAGATTGATTGGTGTGGGACTTTTTAGGGAGAGAAAAGAACAAAAAGAGCAAAAAAAGAAAGACAAAAAAGAAGAAAATTCACTTTCCAGGTATAAGTTCGTTATCAATTGATATTTTTTTGAGTGATAAGAAGAACAAAAAGAGCAGTCGACATGACTTTATATTGTAAAACTATGATGATTGAACTTCACTGAAAAAGGAAAAGCATTGGAAAATCGTCGARATCAAAAATATGAAACTGAATCACCGAGAAAAAAGGATTTTTTAAAAGTTTCAGTTTCATGTATTTCTGGAACCCTAATTTTTATTTTCAAAAAATGTTATATTTGTCCCAGGACCCAAGACCCAGGACACCCGGATCCAGGACACCCGGGTTAAGGTCACCCGGATGTGGGACCCAGGTCACCACCCGGATCCAGGTCACCGGGATCTAGGTCACCCGGGCCCACGACCCAGATCACCCGGACCCACGACCCAGGTCACCCGGATCCAAATCACCCGGATCCAGGTCACCCGGATCCAGGACCCATGTCACCAGGATCTAGGTCACCCGGATCTAGGTCACCCGGATCCAGGTCACACGGATTCAGGTCACACGGATCCAGGACCCAGGTTACCCGGATCCAGGCCACCCGGATCCAGGTCACCCGGATACAGGCCACTCGGATCCAGGCCAACCGGATCCAGAACCCTGGACATCCGGATCCAGGACACCCGGATCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGAGTGATAAGAAGAACAAA</pcr_primer_p1>
		<pcr_primer_p2>GGGTCCTGGGACAAATATAA</pcr_primer_p2>
		<pcr_amplicon_size>225</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGAGTGATAAGAAGAACAAAAAGAGCAGTCGACATGACTTTATATTGTAAAACTATGATGATTGAACTTCACTGAAAAAGGAAAAGCATTGGAAAATCGTCGAAATCAAAAATATGAAACTGAATCACCGAGAAAAAAGGATTTTTTAAAAGTTTCAGTTTCATGTATTTCTGGAACCCTAATTTTTATTTTCAAAAAATGTTATATTTGTCCCAGGACCC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGAGTGATAAGAAGAACAAAAAGAGCAGTCGACATGACTTTATATTGTAAAACTATGATGATTGAACTTCACTGAAAAAGGAAAAGCATTGGAAAATCGTCGARATCAAAAATATGAAACTGAATCACCGAGAAAAAAGGATTTTTTAAAAGTTTCAGTTTCATGTATTTCTGGAACCCTAATTTTTATTTTCAAAAAATGTTATATTTGTCCCAGGACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28594</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>58881</contig_pos>
        <strand></strand>
        <context>AGGATTTTTT[A/T]AAAGTTTCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGTCGAAATCAAAAATATGAAACTGAATCACCGAGAAAAAAGGATTTTTT</left_flank>
        <right_flank>AAAGTTTCAGTTTCATGTATTTCTGGAACCCTAATTTTTATTTTCAAAAA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTATAGCAAGTTTTCTAATCGTCTTATGAAAAATGTGTATATACGAAATGTATATTTTTGTCGCTCTTATCAGTATCAGTCGTTTTGTTTCTCCTCAAAATATACTATCAAAAACAAGAGAACAACTGAAAATAAAACAAATGAGAGCTTGAAATAGAGTCGAAAAATGAAGAAATGAAAATTGACACAAATTTTGAAAGATAACGAAAAATGATTTGGCGTTGTAGAAACAAGATTGATTGGTGTGGGACTTTTTAGGGAGAGAAAAGAACAAAAAGAGCAAAAAAAGAAAGACAAAAAAGAAGAAAATTCACTTTCCAGGTATAAGTTCGTTATCAATTGATATTTTTTTGAGTGATAAGAAGAACAAAAAGAGCAGTCGACATGACTTTATATTGTAAAACTATGATGATTGAACTTCACTGAAAAAGGAAAAGCATTGGAAAATCGTCGAAATCAAAAATATGAAACTGAATCACCGAGAAAAAAGGATTTTTTAAAAGTTTCAGTTTCATGTATTTCTGGAACCCTAATTTTTATTTTCAAAAAATGTTATATTTGTCCCAGGACCCAAGACCCAGGACACCCGGATCCAGGACACCCGGGTTAAGGTCACCCGGATGTGGGACCCAGGTCACCACCCGGATCCAGGTCACCGGGATCTAGGTCACCCGGGCCCACGACCCAGATCACCCGGACCCACGACCCAGGTCACCCGGATCCAAATCACCCGGATCCAGGTCACCCGGATCCAGGACCCATGTCACCAGGATCTAGGTCACCCGGATCTAGGTCACCCGGATCCAGGTCACACGGATTCAGGTCACACGGATCCAGGACCCAGGTTACCCGGATCCAGGCCACCCGGATCCAGGTCACCCGGATACAGGCCACTCGGATCCAGGCCAACCGGATCCAGAACCCTGGACATCCGGATCCAGGACACCCGGATCCTTTCTCCAGGCTCCCCTTTCAGGAGCCCAGAGAAGGGAGAACTGA</canonical>
            <polymorphic>CCTATAGCAAGTTTTCTAATCGTCTTATGAAAAATGTGTATATACGAAATGTATATTTTTGTCGCTCTTATCAGTATCAGTCGTTTTGTTTCTCCTCAAAATATACTATCAAAAACAAGAGAACAACTGAAAATAAAACAAATGAGAGCTTGAAATAGAGTCGAAAAATGAAGAAATGAAAATTGACACAAATTTTGAAAGATAACGAAAAATGATTTGGCGTTGTAGAAACAAGATTGATTGGTGTGGGACTTTTTAGGGAGAGAAAAGAACAAAAAGAGCAAAAAAAGAAAGACAAAAAAGAAGAAAATTCACTTTCCAGGTATAAGTTCGTTATCAATTGATATTTTTTTGAGTGATAAGAAGAACAAAAAGAGCAGTCGACATGACTTTATATTGTAAAACTATGATGATTGAACTTCACTGAAAAAGGAAAAGCATTGGAAAATCGTCGAAATCAAAAATATGAAACTGAATCACCGAGAAAAAAGGATTTTTTWAAAGTTTCAGTTTCATGTATTTCTGGAACCCTAATTTTTATTTTCAAAAAATGTTATATTTGTCCCAGGACCCAAGACCCAGGACACCCGGATCCAGGACACCCGGGTTAAGGTCACCCGGATGTGGGACCCAGGTCACCACCCGGATCCAGGTCACCGGGATCTAGGTCACCCGGGCCCACGACCCAGATCACCCGGACCCACGACCCAGGTCACCCGGATCCAAATCACCCGGATCCAGGTCACCCGGATCCAGGACCCATGTCACCAGGATCTAGGTCACCCGGATCTAGGTCACCCGGATCCAGGTCACACGGATTCAGGTCACACGGATCCAGGACCCAGGTTACCCGGATCCAGGCCACCCGGATCCAGGTCACCCGGATACAGGCCACTCGGATCCAGGCCAACCGGATCCAGAACCCTGGACATCCGGATCCAGGACACCCGGATCCTTTCTCCAGGCTCCCCTTTCAGGAGCCCAGAGAAGGGAGAACTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>498 392 110</canonical_bands>
                <polymorphic_bands>608 392</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGAGTGATAAGAAGAACAAA</pcr_primer_p1>
		<pcr_primer_p2>GGGTCCTGGGACAAATATAA</pcr_primer_p2>
		<pcr_amplicon_size>225</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGAGTGATAAGAAGAACAAAAAGAGCAGTCGACATGACTTTATATTGTAAAACTATGATGATTGAACTTCACTGAAAAAGGAAAAGCATTGGAAAATCGTCGAAATCAAAAATATGAAACTGAATCACCGAGAAAAAAGGATTTTTTAAAAGTTTCAGTTTCATGTATTTCTGGAACCCTAATTTTTATTTTCAAAAAATGTTATATTTGTCCCAGGACCC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGAGTGATAAGAAGAACAAAAAGAGCAGTCGACATGACTTTATATTGTAAAACTATGATGATTGAACTTCACTGAAAAAGGAAAAGCATTGGAAAATCGTCGAAATCAAAAATATGAAACTGAATCACCGAGAAAAAAGGATTTTTTWAAAGTTTCAGTTTCATGTATTTCTGGAACCCTAATTTTTATTTTCAAAAAATGTTATATTTGTCCCAGGACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28595</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>74154</contig_pos>
        <strand>+</strand>
        <context>TATTCAAATT[C/T]AAAACTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTGGTGAAACCGGAAAACAAAACAGACAATTTTTAGCCGTATTCAAATT</left_flank>
        <right_flank>AAAACTTTTTTCGAAAGGCCTACAAAAACCCACGGATACATGAATGCATG</right_flank>
        <qual_score>134</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTATACTGGAATATATAAAAATGTTAAATGAAACAAATGTAACAGAAAAAATTTCAGTTTCAGAAAACTGATATTTTTCACTTTACTTATCTCTAAGGCTAAATCCTTTCTTGGCTTATAAAAATAAAAATAAATTGTTCAAAAATACCTGATTAGTTGCCAGTGAGTAGTACATCAGAGTGCATCCATAGATGAAGCACACGAATTGAGTCAACTGGAGCACAGTGACAGCCATCGAGATCTTTGCTGGCAGTTTGATGTTCATCGATCGGATGAAATAGTATCTGAAAATTTTTGAAAATCAAGTGACGCTGGGAACAAACACTTTGATTTCTGGAGTATATAATCAGATTGTAAAACAGTGAGAAATATTTTCCACACTTTTCAAAAATCATTCTCGAACAAGCAGAATTTAAACTAGAATAGATTTTTTCAAAATTCTTACAAGGTTGGTGAAACCGGAAAACAAAACAGACAATTTTTAGCCGTATTCAAATTCAAAACTTTTTTCGAAAGGCCTACAAAAACCCACGGATACATGAATGCATGTACAAACAGGTTGACAATGGCACCGACACGAATTTGAGACGATGGAGTTGGATAGGTGACACAGAAGAAGAGGAATGTCGCCACGTGGTGATACCTGAAAATGTTGGAAATTCTGACAAAAAAAAATAATAATAATAATAGGTCTACCCAAACTTTGAAATTATTTATTTCGGTTCCTATGGGAGGTATCAAAAATCTGGCAACTGATGAATAATTTATCGTAAAGTTACCAACATTTTATCAGTTGAAAGTTCTTTATATCTTTTGAAGGAACCGAGATAGTTGACTTCAAATCGCACGTATAGTGTATATTAGAGCAAATACGGTAATGGGTTATTCGGGTGCAGCAAAAATGCAAGCTACAACATTTTCTGGAAACACCATCACGTCAAAATGCAGACAAAAAGTCTTCCGTCGCCCCTTCAAAGATTCTGCTTCCCCAAAACTAAC</canonical>
            <polymorphic>GGTATACTGGAATATATAAAAATGTTAAATGAAACAAATGTAACAGAAAAAATTTCAGTTTCAGAAAACTGATATTTTTCACTTTACTTATCTCTAAGGCTAAATCCTTTCTTGGCTTATAAAAATAAAAATAAATTGTTCAAAAATACCTGATTAGTTGCCAGTGAGTAGTACATCAGAGTGCATCCATAGATGAAGCACACGAATTGAGTCAACTGGAGCACAGTGACAGCCATCGAGATCTTTGCTGGCAGTTTGATGTTCATCGATCGGATGAAATAGTATCTGAAAATTTTTGAAAATCAAGTGACGCTGGGAACAAACACTTTGATTTCTGGAGTATATAATCAGATTGTAAAACAGTGAGAAATATTTTCCACACTTTTCAAAAATCATTCTCGAACAAGCAGAATTTAAACTAGAATAGATTTTTTCAAAATTCTTACAAGGTTGGTGAAACCGGAAAACAAAACAGACAATTTTTAGCCGTATTCAAATTYAAAACTTTTTTCGAAAGGCCTACAAAAACCCACGGATACATGAATGCATGTACAAACAGGTTGACAATGGCACCGACACGAATTTGAGACGATGGAGTTGGATAGGTGACACAGAAGAAGAGGAATGTCGCCACGTGGTGATACCTGAAAATGTTGGAAATTCTGACAAAAAAAAATAATAATAATAATAGGTCTACCCAAACTTTGAAATTATTTATTTCGGTTCCTATGGGAGGTATCAAAAATCTGGCAACTGATGAATAATTTATCGTAAAGTTACCAACATTTTATCAGTTGAAAGTTCTTTATATCTTTTGAAGGAACCGAGATAGTTGACTTCAAATCGCACGTATAGTGTATATTAGAGCAAATACGGTAATGGGTTATTCGGGTGCAGCAAAAATGCAAGCTACAACATTTTCTGGAAACACCATCACGTCAAAATGCAGACAAAAAGTCTTCCGTCGCCCCTTCAAAGATTCTGCTTCCCCAAAACTAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>342 240 120 85 78 58 50 27</canonical_bands>
                <polymorphic_bands>342 240 143 120 78 50 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATATTTTCCACACTTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>CTTCTGTGTCACCTATCCAACT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAAATATTTTCCACACTTTTCAAAAATCATTCTCGAACAAGCAGAATTTAAACTAGAATAGATTTTTTCAAAATTCTTACAAGGTTGGTGAAACCGGAAAACAAAACAGACAATTTTTAGCCGTATTCAAATTCAAAACTTTTTTCGAAAGGCCTACAAAAACCCACGGATACATGAATGCATGTACAAACAGGTTGACAATGGCACCGACACGAATTTGAGACGATGGAGTTGGATAGGTGACACAGAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAATATTTTCCACACTTTTCAAAAATCATTCTCGAACAAGCAGAATTTAAACTAGAATAGATTTTTTCAAAATTCTTACAAGGTTGGTGAAACCGGAAAACAAAACAGACAATTTTTAGCCGTATTCAAATTYAAAACTTTTTTCGAAAGGCCTACAAAAACCCACGGATACATGAATGCATGTACAAACAGGTTGACAATGGCACCGACACGAATTTGAGACGATGGAGTTGGATAGGTGACACAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28596</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>74199</contig_pos>
        <strand>+</strand>
        <context>GATACATGAA[C/T]GCATGTACAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTCAAAACTTTTTTCGAAAGGCCTACAAAAACCCACGGATACATGAA</left_flank>
        <right_flank>GCATGTACAAACAGGTTGACAATGGCACCGACACGAATTTGAGACGATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAAATTTCAGTTTCAGAAAACTGATATTTTTCACTTTACTTATCTCTAAGGCTAAATCCTTTCTTGGCTTATAAAAATAAAAATAAATTGTTCAAAAATACCTGATTAGTTGCCAGTGAGTAGTACATCAGAGTGCATCCATAGATGAAGCACACGAATTGAGTCAACTGGAGCACAGTGACAGCCATCGAGATCTTTGCTGGCAGTTTGATGTTCATCGATCGGATGAAATAGTATCTGAAAATTTTTGAAAATCAAGTGACGCTGGGAACAAACACTTTGATTTCTGGAGTATATAATCAGATTGTAAAACAGTGAGAAATATTTTCCACACTTTTCAAAAATCATTCTCGAACAAGCAGAATTTAAACTAGAATAGATTTTTTCAAAATTCTTACAAGGTTGGTGAAACCGGAAAACAAAACAGACAATTTTTAGCCGTATTCAAATTCAAAACTTTTTTCGAAAGGCCTACAAAAACCCACGGATACATGAATGCATGTACAAACAGGTTGACAATGGCACCGACACGAATTTGAGACGATGGAGTTGGATAGGTGACACAGAAGAAGAGGAATGTCGCCACGTGGTGATACCTGAAAATGTTGGAAATTCTGACAAAAAAAAATAATAATAATAATAGGTCTACCCAAACTTTGAAATTATTTATTTCGGTTCCTATGGGAGGTATCAAAAATCTGGCAACTGATGAATAATTTATCGTAAAGTTACCAACATTTTATCAGTTGAAAGTTCTTTATATCTTTTGAAGGAACCGAGATAGTTGACTTCAAATCGCACGTATAGTGTATATTAGAGCAAATACGGTAATGGGTTATTCGGGTGCAGCAAAAATGCAAGCTACAACATTTTCTGGAAACACCATCACGTCAAAATGCAGACAAAAAGTCTTCCGTCGCCCCTTCAAAGATTCTGCTTCCCCAAAACTAACCAATGCAAGAAGATGAGTGGTTTCTTGCGAAGCACCAAGAAAAAT</canonical>
            <polymorphic>GAAAAAATTTCAGTTTCAGAAAACTGATATTTTTCACTTTACTTATCTCTAAGGCTAAATCCTTTCTTGGCTTATAAAAATAAAAATAAATTGTTCAAAAATACCTGATTAGTTGCCAGTGAGTAGTACATCAGAGTGCATCCATAGATGAAGCACACGAATTGAGTCAACTGGAGCACAGTGACAGCCATCGAGATCTTTGCTGGCAGTTTGATGTTCATCGATCGGATGAAATAGTATCTGAAAATTTTTGAAAATCAAGTGACGCTGGGAACAAACACTTTGATTTCTGGAGTATATAATCAGATTGTAAAACAGTGAGAAATATTTTCCACACTTTTCAAAAATCATTCTCGAACAAGCAGAATTTAAACTAGAATAGATTTTTTCAAAATTCTTACAAGGTTGGTGAAACCGGAAAACAAAACAGACAATTTTTAGCCGTATTCAAATTCAAAACTTTTTTCGAAAGGCCTACAAAAACCCACGGATACATGAAYGCATGTACAAACAGGTTGACAATGGCACCGACACGAATTTGAGACGATGGAGTTGGATAGGTGACACAGAAGAAGAGGAATGTCGCCACGTGGTGATACCTGAAAATGTTGGAAATTCTGACAAAAAAAAATAATAATAATAATAGGTCTACCCAAACTTTGAAATTATTTATTTCGGTTCCTATGGGAGGTATCAAAAATCTGGCAACTGATGAATAATTTATCGTAAAGTTACCAACATTTTATCAGTTGAAAGTTCTTTATATCTTTTGAAGGAACCGAGATAGTTGACTTCAAATCGCACGTATAGTGTATATTAGAGCAAATACGGTAATGGGTTATTCGGGTGCAGCAAAAATGCAAGCTACAACATTTTCTGGAAACACCATCACGTCAAAATGCAGACAAAAAGTCTTCCGTCGCCCCTTCAAAGATTCTGCTTCCCCAAAACTAACCAATGCAAGAAGATGAGTGGTTTCTTGCGAAGCACCAAGAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATGCAT</site>
                <isoschizomers>
                    <enzyme>BfrBI</enzyme>
                    <enzyme>EcoT22I</enzyme>
                    <enzyme>Mph1103I</enzyme>
                    <enzyme>NsiI</enzyme>
                    <enzyme>Ppu10I</enzyme>
                    <enzyme>Zsp2I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>363 348 138 59 41 40 11</canonical_bands>
                <polymorphic_bands>711 138 59 41 40 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATATTTTCCACACTTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>CTTCTGTGTCACCTATCCAACT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAAATATTTTCCACACTTTTCAAAAATCATTCTCGAACAAGCAGAATTTAAACTAGAATAGATTTTTTCAAAATTCTTACAAGGTTGGTGAAACCGGAAAACAAAACAGACAATTTTTAGCCGTATTCAAATTCAAAACTTTTTTCGAAAGGCCTACAAAAACCCACGGATACATGAATGCATGTACAAACAGGTTGACAATGGCACCGACACGAATTTGAGACGATGGAGTTGGATAGGTGACACAGAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAATATTTTCCACACTTTTCAAAAATCATTCTCGAACAAGCAGAATTTAAACTAGAATAGATTTTTTCAAAATTCTTACAAGGTTGGTGAAACCGGAAAACAAAACAGACAATTTTTAGCCGTATTCAAATTCAAAACTTTTTTCGAAAGGCCTACAAAAACCCACGGATACATGAAYGCATGTACAAACAGGTTGACAATGGCACCGACACGAATTTGAGACGATGGAGTTGGATAGGTGACACAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28597</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>74486</contig_pos>
        <strand></strand>
        <context>aaccgagata[G/A]ttgacttcaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AACATTTTATCAGTTGAAAGTTCTTTATATCTTTTGAAGGAACCGAGATA</left_flank>
        <right_flank>TTGACTTCAAATCGCACGTATAGTGTATATTAGAGCAAATACGGTAATGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGGAGTATATAATCAGATTGTAAAACAGTGAGAAATATTTTCCACACTTTTCAAAAATCATTCTCGAACAAGCAGAATTTAAACTAGAATAGATTTTTTCAAAATTCTTACAAGGTTGGTGAAACCGGAAAACAAAACAGACAATTTTTAGCCGTATTCAAATTCAAAACTTTTTTCGAAAGGCCTACAAAAACCCACGGATACATGAATGCATGTACAAACAGGTTGACAATGGCACCGACACGAATTTGAGACGATGGAGTTGGATAGGTGACACAGAAGAAGAGGAATGTCGCCACGTGGTGATACCTGAAAATGTTGGAAATTCTGACAAAAAAAAATAATAATAATAATAGGTCTACCCAAACTTTGAAATTATTTATTTCGGTTCCTATGGGAGGTATCAAAAATCTGGCAACTGATGAATAATTTATCGTAAAGTTACCAACATTTTATCAGTTGAAAGTTCTTTATATCTTTTGAAGGAACCGAGATAGTTGACTTCAAATCGCACGTATAGTGTATATTAGAGCAAATACGGTAATGGGTTATTCGGGTGCAGCAAAAATGCAAGCTACAACATTTTCTGGAAACACCATCACGTCAAAATGCAGACAAAAAGTCTTCCGTCGCCCCTTCAAAGATTCTGCTTCCCCAAAACTAACCAATGCAAGAAGATGAGTGGTTTCTTGCGAAGCACCAAGAAAAATGTGTCCACAAACTCCAAAGCCTTTGACAGAACCGTCAGAAACAGCCAGTATTCCGCTTGACTTGGAAGAGTGGACAACGCCTCACAGCCACATCCTAAAATCAATTTTCAGTCTAAACTTTGCAAAAATTAGGGGAATTCCAACCATAAAGTCCGAATCGTCGAATCTGTTCAACCATGAACGGAAACATTGCCCATGATCCGTAGATTGAGAAAACGGAGAGGAAGAAGTTCCAGAAGCGAAGTGCATTTGTGAGCTTGAATGGTTCTCGATCCCTCATGCATCTT</canonical>
            <polymorphic>TTCTGGAGTATATAATCAGATTGTAAAACAGTGAGAAATATTTTCCACACTTTTCAAAAATCATTCTCGAACAAGCAGAATTTAAACTAGAATAGATTTTTTCAAAATTCTTACAAGGTTGGTGAAACCGGAAAACAAAACAGACAATTTTTAGCCGTATTCAAATTCAAAACTTTTTTCGAAAGGCCTACAAAAACCCACGGATACATGAATGCATGTACAAACAGGTTGACAATGGCACCGACACGAATTTGAGACGATGGAGTTGGATAGGTGACACAGAAGAAGAGGAATGTCGCCACGTGGTGATACCTGAAAATGTTGGAAATTCTGACAAAAAAAAATAATAATAATAATAGGTCTACCCAAACTTTGAAATTATTTATTTCGGTTCCTATGGGAGGTATCAAAAATCTGGCAACTGATGAATAATTTATCGTAAAGTTACCAACATTTTATCAGTTGAAAGTTCTTTATATCTTTTGAAGGAACCGAGATARTTGACTTCAAATCGCACGTATAGTGTATATTAGAGCAAATACGGTAATGGGTTATTCGGGTGCAGCAAAAATGCAAGCTACAACATTTTCTGGAAACACCATCACGTCAAAATGCAGACAAAAAGTCTTCCGTCGCCCCTTCAAAGATTCTGCTTCCCCAAAACTAACCAATGCAAGAAGATGAGTGGTTTCTTGCGAAGCACCAAGAAAAATGTGTCCACAAACTCCAAAGCCTTTGACAGAACCGTCAGAAACAGCCAGTATTCCGCTTGACTTGGAAGAGTGGACAACGCCTCACAGCCACATCCTAAAATCAATTTTCAGTCTAAACTTTGCAAAAATTAGGGGAATTCCAACCATAAAGTCCGAATCGTCGAATCTGTTCAACCATGAACGGAAACATTGCCCATGATCCGTAGATTGAGAAAACGGAGAGGAAGAAGTTCCAGAAGCGAAGTGCATTTGTGAGCTTGAATGGTTCTCGATCCCTCATGCATCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>498 272 230</canonical_bands>
                <polymorphic_bands>770 230</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>230 216 215 140 132 67</canonical_bands>
                <polymorphic_bands>356 230 215 132 67</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAAAATGTTGGAAATTCTG</pcr_primer_p1>
		<pcr_primer_p2>TGTTGTAGCTTGCATTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAATGTTGGAAATTCTGACAAAAAAAAATAATAATAATAATAGGTCTACCCAAACTTTGAAATTATTTATTTCGGTTCCTATGGGAGGTATCAAAAATCTGGCAACTGATGAATAATTTATCGTAAAGTTACCAACATTTTATCAGTTGAAAGTTCTTTATATCTTTTGAAGGAACCGAGATAGTTGACTTCAAATCGCACGTATAGTGTATATTAGAGCAAATACGGTAATGGGTTATTCGGGTGCAGCAAAAATGCAAGCTACAACA</canonical_amplicon>
		<polymorphic_amplicon>CTGAAAATGTTGGAAATTCTGACAAAAAAAAATAATAATAATAATAGGTCTACCCAAACTTTGAAATTATTTATTTCGGTTCCTATGGGAGGTATCAAAAATCTGGCAACTGATGAATAATTTATCGTAAAGTTACCAACATTTTATCAGTTGAAAGTTCTTTATATCTTTTGAAGGAACCGAGATARTTGACTTCAAATCGCACGTATAGTGTATATTAGAGCAAATACGGTAATGGGTTATTCGGGTGCAGCAAAAATGCAAGCTACAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28598</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>74585</contig_pos>
        <strand></strand>
        <context>tctggaaaca[C/T]catcacgtca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGTTATTCGGGTGCAGCAAAAATGCAAGCTACAACATTTTCTGGAAACA</left_flank>
        <right_flank>CATCACGTCAAAATGCAGACAAAAAGTCTTCCGTCGCCCCTTCAAAGATT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCAAAATTCTTACAAGGTTGGTGAAACCGGAAAACAAAACAGACAATTTTTAGCCGTATTCAAATTCAAAACTTTTTTCGAAAGGCCTACAAAAACCCACGGATACATGAATGCATGTACAAACAGGTTGACAATGGCACCGACACGAATTTGAGACGATGGAGTTGGATAGGTGACACAGAAGAAGAGGAATGTCGCCACGTGGTGATACCTGAAAATGTTGGAAATTCTGACAAAAAAAAATAATAATAATAATAGGTCTACCCAAACTTTGAAATTATTTATTTCGGTTCCTATGGGAGGTATCAAAAATCTGGCAACTGATGAATAATTTATCGTAAAGTTACCAACATTTTATCAGTTGAAAGTTCTTTATATCTTTTGAAGGAACCGAGATAGTTGACTTCAAATCGCACGTATAGTGTATATTAGAGCAAATACGGTAATGGGTTATTCGGGTGCAGCAAAAATGCAAGCTACAACATTTTCTGGAAACACCATCACGTCAAAATGCAGACAAAAAGTCTTCCGTCGCCCCTTCAAAGATTCTGCTTCCCCAAAACTAACCAATGCAAGAAGATGAGTGGTTTCTTGCGAAGCACCAAGAAAAATGTGTCCACAAACTCCAAAGCCTTTGACAGAACCGTCAGAAACAGCCAGTATTCCGCTTGACTTGGAAGAGTGGACAACGCCTCACAGCCACATCCTAAAATCAATTTTCAGTCTAAACTTTGCAAAAATTAGGGGAATTCCAACCATAAAGTCCGAATCGTCGAATCTGTTCAACCATGAACGGAAACATTGCCCATGATCCGTAGATTGAGAAAACGGAGAGGAAGAAGTTCCAGAAGCGAAGTGCATTTGTGAGCTTGAATGGTTCTCGATCCCTCATGCATCTTTTGATGGAGAAGATCACGATGACATAGGCAATGGTCATCTGTAAGCGTTATTTTACGAATTTTGCGAATAAAGATTTGATAAAAGTTTCTGACTATGAA</canonical>
            <polymorphic>TTTCAAAATTCTTACAAGGTTGGTGAAACCGGAAAACAAAACAGACAATTTTTAGCCGTATTCAAATTCAAAACTTTTTTCGAAAGGCCTACAAAAACCCACGGATACATGAATGCATGTACAAACAGGTTGACAATGGCACCGACACGAATTTGAGACGATGGAGTTGGATAGGTGACACAGAAGAAGAGGAATGTCGCCACGTGGTGATACCTGAAAATGTTGGAAATTCTGACAAAAAAAAATAATAATAATAATAGGTCTACCCAAACTTTGAAATTATTTATTTCGGTTCCTATGGGAGGTATCAAAAATCTGGCAACTGATGAATAATTTATCGTAAAGTTACCAACATTTTATCAGTTGAAAGTTCTTTATATCTTTTGAAGGAACCGAGATAGTTGACTTCAAATCGCACGTATAGTGTATATTAGAGCAAATACGGTAATGGGTTATTCGGGTGCAGCAAAAATGCAAGCTACAACATTTTCTGGAAACAYCATCACGTCAAAATGCAGACAAAAAGTCTTCCGTCGCCCCTTCAAAGATTCTGCTTCCCCAAAACTAACCAATGCAAGAAGATGAGTGGTTTCTTGCGAAGCACCAAGAAAAATGTGTCCACAAACTCCAAAGCCTTTGACAGAACCGTCAGAAACAGCCAGTATTCCGCTTGACTTGGAAGAGTGGACAACGCCTCACAGCCACATCCTAAAATCAATTTTCAGTCTAAACTTTGCAAAAATTAGGGGAATTCCAACCATAAAGTCCGAATCGTCGAATCTGTTCAACCATGAACGGAAACATTGCCCATGATCCGTAGATTGAGAAAACGGAGAGGAAGAAGTTCCAGAAGCGAAGTGCATTTGTGAGCTTGAATGGTTCTCGATCCCTCATGCATCTTTTGATGGAGAAGATCACGATGACATAGGCAATGGTCATCTGTAAGCGTTATTTTACGAATTTTGCGAATAAAGATTTGATAAAAGTTTCTGACTATGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>208 156 83 83 76 65 49 40 37 36 30 25 22 15 14 12 9 8 6 6 6 4 4 3 3</canonical_bands>
                <polymorphic_bands>208 156 83 83 76 65 49 42 40 37 30 25 22 15 14 12 9 8 6 6 4 4 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATACGGTAATGGGTTATTC</pcr_primer_p1>
		<pcr_primer_p2>GTCCACTCTTCCAAGTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CAAATACGGTAATGGGTTATTCGGGTGCAGCAAAAATGCAAGCTACAACATTTTCTGGAAACACCATCACGTCAAAATGCAGACAAAAAGTCTTCCGTCGCCCCTTCAAAGATTCTGCTTCCCCAAAACTAACCAATGCAAGAAGATGAGTGGTTTCTTGCGAAGCACCAAGAAAAATGTGTCCACAAACTCCAAAGCCTTTGACAGAACCGTCAGAAACAGCCAGTATTCCGCTTGACTTGGAAGAGTGGAC</canonical_amplicon>
		<polymorphic_amplicon>CAAATACGGTAATGGGTTATTCGGGTGCAGCAAAAATGCAAGCTACAACATTTTCTGGAAACAYCATCACGTCAAAATGCAGACAAAAAGTCTTCCGTCGCCCCTTCAAAGATTCTGCTTCCCCAAAACTAACCAATGCAAGAAGATGAGTGGTTTCTTGCGAAGCACCAAGAAAAATGTGTCCACAAACTCCAAAGCCTTTGACAGAACCGTCAGAAACAGCCAGTATTCCGCTTGACTTGGAAGAGTGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28599</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>93343</contig_pos>
        <strand></strand>
        <context>tttatcagtt[G/A]accacttttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGATCAACTGACAAAGTGCTTTTGGTATTATGATAAACATTTTATCAGTT</left_flank>
        <right_flank>ACCACTTTTTTATATCTTTCATAGGAACCGAGATAGATTATGTCAAACTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATTGATCTAATAACTTGAAATTAATAACATATTTCATGAAAAATCGACGAAACAGACGAAACATTTTTAGTTCAAAAATCATTTCCATTTAACTCGGTTCCTGTAAAAGACATCAAAAAGTGCCAAACTGAAAAATGTTAATTATATTATCAAAAATATTTTGTCAGTCAACCACTTTTTGATATCTTTCACAGGAATCGAGATAAATTGGATCAAAGTTAAAAGCTAGGGGTCATTTAAATAATTTTTATGGTGGTTAATACATGAAACTCTTATCAAATCTCCAAATTTATGAGAATTTTATGAAAACTCAATAAAGCAAAAAACAATTTTTTAGAGAGTTAATCGTTCATCGATACTGTAACACCAATTGTTATCTTTAAATATGAAATAAAAGAGCCAAACTTGATCCAATTCATCTAGTTTCCTGTGAAAGATGTTATGAATCGATCAACTGACAAAGTGCTTTTGGTATTATGATAAACATTTTATCAGTTGACCACTTTTTTATATCTTTCATAGGAACCGAGATAGATTATGTCAAACTTGACTTTTATATTGAATTCAGAGAAGTTCGCATTTTTTCAGTTTTATCTGTTGTATAGGTTTTATAAGTTTGAATATCTTCTCATTGGAACTTTGAGTCAGAGTGGAGAAATATGAGATTTTTCAGAAAGTTTCAGATCCAATATTATCAAAAATGTTCTTGGCCACTTTTTGATATCTTTCAACACGGCCAAGAAAAATAAGGTCCTTGGATTCCCCTTATCATAATCTTCGACACTACCGCAACGTGGTGCACATAATCCGTTCCTCCTGACTTTGATCACTTTCTAGATGTTACTATTATTAACATCCAATGTGAAATATTGAAAACAAATATCTTATGATAGTCGTCGGATTAGTTCTTAATGCTTCTATTGTATATTTTTTGTAATAATCGTCAAATATCACCTAGACATTATGTGGCGTTGTTTTTAATAATAAAAGCAAAGCAA</canonical>
            <polymorphic>CGATTGATCTAATAACTTGAAATTAATAACATATTTCATGAAAAATCGACGAAACAGACGAAACATTTTTAGTTCAAAAATCATTTCCATTTAACTCGGTTCCTGTAAAAGACATCAAAAAGTGCCAAACTGAAAAATGTTAATTATATTATCAAAAATATTTTGTCAGTCAACCACTTTTTGATATCTTTCACAGGAATCGAGATAAATTGGATCAAAGTTAAAAGCTAGGGGTCATTTAAATAATTTTTATGGTGGTTAATACATGAAACTCTTATCAAATCTCCAAATTTATGAGAATTTTATGAAAACTCAATAAAGCAAAAAACAATTTTTTAGAGAGTTAATCGTTCATCGATACTGTAACACCAATTGTTATCTTTAAATATGAAATAAAAGAGCCAAACTTGATCCAATTCATCTAGTTTCCTGTGAAAGATGTTATGAATCGATCAACTGACAAAGTGCTTTTGGTATTATGATAAACATTTTATCAGTTRACCACTTTTTTATATCTTTCATAGGAACCGAGATAGATTATGTCAAACTTGACTTTTATATTGAATTCAGAGAAGTTCGCATTTTTTCAGTTTTATCTGTTGTATAGGTTTTATAAGTTTGAATATCTTCTCATTGGAACTTTGAGTCAGAGTGGAGAAATATGAGATTTTTCAGAAAGTTTCAGATCCAATATTATCAAAAATGTTCTTGGCCACTTTTTGATATCTTTCAACACGGCCAAGAAAAATAAGGTCCTTGGATTCCCCTTATCATAATCTTCGACACTACCGCAACGTGGTGCACATAATCCGTTCCTCCTGACTTTGATCACTTTCTAGATGTTACTATTATTAACATCCAATGTGAAATATTGAAAACAAATATCTTATGATAGTCGTCGGATTAGTTCTTAATGCTTCTATTGTATATTTTTTGTAATAATCGTCAAATATCACCTAGACATTATGTGGCGTTGTTTTTAATAATAAAAGCAAAGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>501 328 171</canonical_bands>
                <polymorphic_bands>829 171</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACTGTAACACCAATTGTTATCTTTA</pcr_primer_p1>
		<pcr_primer_p2>TTCCAATGAGAAGATATTCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>281</pcr_amplicon_size>
		<canonical_amplicon>TACTGTAACACCAATTGTTATCTTTAAATATGAAATAAAAGAGCCAAACTTGATCCAATTCATCTAGTTTCCTGTGAAAGATGTTATGAATCGATCAACTGACAAAGTGCTTTTGGTATTATGATAAACATTTTATCAGTTGACCACTTTTTTATATCTTTCATAGGAACCGAGATAGATTATGTCAAACTTGACTTTTATATTGAATTCAGAGAAGTTCGCATTTTTTCAGTTTTATCTGTTGTATAGGTTTTATAAGTTTGAATATCTTCTCATTGGAA</canonical_amplicon>
		<polymorphic_amplicon>TACTGTAACACCAATTGTTATCTTTAAATATGAAATAAAAGAGCCAAACTTGATCCAATTCATCTAGTTTCCTGTGAAAGATGTTATGAATCGATCAACTGACAAAGTGCTTTTGGTATTATGATAAACATTTTATCAGTTRACCACTTTTTTATATCTTTCATAGGAACCGAGATAGATTATGTCAAACTTGACTTTTATATTGAATTCAGAGAAGTTCGCATTTTTTCAGTTTTATCTGTTGTATAGGTTTTATAAGTTTGAATATCTTCTCATTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28600</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>93438</contig_pos>
        <strand>+</strand>
        <context>TTTCAGTTTY[C/T]TCTGTTGTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACTTGACTTTTATATTGAATTCAGAGAAGTTCGCATTTTTTCAGTTTT</left_flank>
        <right_flank>TCTGTTGTATAGGTTTTATAAGTTTGAATATCTTCTCATTGGAACTTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGTTCCTGTAAAAGACATCAAAAAGTGCCAAACTGAAAAATGTTAATTATATTATCAAAAATATTTTGTCAGTCAACCACTTTTTGATATCTTTCACAGGAATCGAGATAAATTGGATCAAAGTTAAAAGCTAGGGGTCATTTAAATAATTTTTATGGTGGTTAATACATGAAACTCTTATCAAATCTCCAAATTTATGAGAATTTTATGAAAACTCAATAAAGCAAAAAACAATTTTTTAGAGAGTTAATCGTTCATCGATACTGTAACACCAATTGTTATCTTTAAATATGAAATAAAAGAGCCAAACTTGATCCAATTCATCTAGTTTCCTGTGAAAGATGTTATGAATCGATCAACTGACAAAGTGCTTTTGGTATTATGATAAACATTTTATCAGTTGACCACTTTTTTATATCTTTCATAGGAACCGAGATAGATTATGTCAAACTTGACTTTTATATTGAATTCAGAGAAGTTCGCATTTTTTCAGTTTTATCTGTTGTATAGGTTTTATAAGTTTGAATATCTTCTCATTGGAACTTTGAGTCAGAGTGGAGAAATATGAGATTTTTCAGAAAGTTTCAGATCCAATATTATCAAAAATGTTCTTGGCCACTTTTTGATATCTTTCAACACGGCCAAGAAAAATAAGGTCCTTGGATTCCCCTTATCATAATCTTCGACACTACCGCAACGTGGTGCACATAATCCGTTCCTCCTGACTTTGATCACTTTCTAGATGTTACTATTATTAACATCCAATGTGAAATATTGAAAACAAATATCTTATGATAGTCGTCGGATTAGTTCTTAATGCTTCTATTGTATATTTTTTGTAATAATCGTCAAATATCACCTAGACATTATGTGGCGTTGTTTTTAATAATAAAAGCAAAGCAAGCAGTCGATAACCAGGAACGGAAACGGAGCAATATTTTCTAGAATTTTCTAAGTTTGATGTTGACTCCTCGAAACATTGAAGTTTTGAAATAGTT</canonical>
            <polymorphic>TCGGTTCCTGTAAAAGACATCAAAAAGTGCCAAACTGAAAAATGTTAATTATATTATCAAAAATATTTTGTCAGTCAACCACTTTTTGATATCTTTCACAGGAATCGAGATAAATTGGATCAAAGTTAAAAGCTAGGGGTCATTTAAATAATTTTTATGGTGGTTAATACATGAAACTCTTATCAAATCTCCAAATTTATGAGAATTTTATGAAAACTCAATAAAGCAAAAAACAATTTTTTAGAGAGTTAATCGTTCATCGATACTGTAACACCAATTGTTATCTTTAAATATGAAATAAAAGAGCCAAACTTGATCCAATTCATCTAGTTTCCTGTGAAAGATGTTATGAATCGATCAACTGACAAAGTGCTTTTGGTATTATGATAAACATTTTATCAGTTGACCACTTTTTTATATCTTTCATAGGAACCGAGATAGATTATGTCAAACTTGACTTTTATATTGAATTCAGAGAAGTTCGCATTTTTTCAGTTTTYTCTGTTGTATAGGTTTTATAAGTTTGAATATCTTCTCATTGGAACTTTGAGTCAGAGTGGAGAAATATGAGATTTTTCAGAAAGTTTCAGATCCAATATTATCAAAAATGTTCTTGGCCACTTTTTGATATCTTTCAACACGGCCAAGAAAAATAAGGTCCTTGGATTCCCCTTATCATAATCTTCGACACTACCGCAACGTGGTGCACATAATCCGTTCCTCCTGACTTTGATCACTTTCTAGATGTTACTATTATTAACATCCAATGTGAAATATTGAAAACAAATATCTTATGATAGTCGTCGGATTAGTTCTTAATGCTTCTATTGTATATTTTTTGTAATAATCGTCAAATATCACCTAGACATTATGTGGCGTTGTTTTTAATAATAAAAGCAAAGCAAGCAGTCGATAACCAGGAACGGAAACGGAGCAATATTTTCTAGAATTTTCTAAGTTTGATGTTGACTCCTCGAAACATTGAAGTTTTGAAATAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTGTAACACCAATTGTTATCTTTA</pcr_primer_p1>
		<pcr_primer_p2>GACTCAAAGTTCCAATGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>290</pcr_amplicon_size>
		<canonical_amplicon>TACTGTAACACCAATTGTTATCTTTAAATATGAAATAAAAGAGCCAAACTTGATCCAATTCATCTAGTTTCCTGTGAAAGATGTTATGAATCGATCAACTGACAAAGTGCTTTTGGTATTATGATAAACATTTTATCAGTTGACCACTTTTTTATATCTTTCATAGGAACCGAGATAGATTATGTCAAACTTGACTTTTATATTGAATTCAGAGAAGTTCGCATTTTTTCAGTTTTATCTGTTGTATAGGTTTTATAAGTTTGAATATCTTCTCATTGGAACTTTGAGTC</canonical_amplicon>
		<polymorphic_amplicon>TACTGTAACACCAATTGTTATCTTTAAATATGAAATAAAAGAGCCAAACTTGATCCAATTCATCTAGTTTCCTGTGAAAGATGTTATGAATCGATCAACTGACAAAGTGCTTTTGGTATTATGATAAACATTTTATCAGTTGACCACTTTTTTATATCTTTCATAGGAACCGAGATAGATTATGTCAAACTTGACTTTTATATTGAATTCAGAGAAGTTCGCATTTTTTCAGTTTTYTCTGTTGTATAGGTTTTATAAGTTTGAATATCTTCTCATTGGAACTTTGAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28601</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>96873</contig_pos>
        <strand>+</strand>
        <context>GTACGATATG[C/T]AAAAAAAAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATG</left_flank>
        <right_flank>AAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAAAATAGAAGTATTGGTTGCGTTTCTTTCAGAGAATTTAATATGAGACTGCTTCACCGACTTCTCAATATTTCTGTTTTATTTACTTTCGAAATTTCACCTTTTCTAATCATTCTAATCGCTTGTCACCATAGTTTACTATTCAAATAACCAATAGACTTTTTTACAGAGAGGCAATCAATTGGGTTCAGCAGTTCTACTGAAAAAATGCCACGTGTCAGCTCTCTGATTGTGTTTTTTACCTTCATGGTGACCCTTTTCGCTGTCAGTCATGCAGCCGGAGTCTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAA</canonical>
            <polymorphic>TCTAAAATAGAAGTATTGGTTGCGTTTCTTTCAGAGAATTTAATATGAGACTGCTTCACCGACTTCTCAATATTTCTGTTTTATTTACTTTCGAAATTTCACCTTTTCTAATCATTCTAATCGCTTGTCACCATAGTTTACTATTCAAATAACCAATAGACTTTTTTACAGAGAGGCAATCAATTGGGTTCAGCAGTTCTACTGAAAAAATGCCACGTGTCAGCTCTCTGATTGTGTTTTTTACCTTCATGGTGACCCTTTTCGCTGTCAGTCATGCAGCCGGAGTCTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGYAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTCTTTTGTTGTTTCAAGA</pcr_primer_p1>
		<pcr_primer_p2>CAACCGTATACCACTAGGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTG</canonical_amplicon>
		<polymorphic_amplicon>AAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGYAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28602</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>97008</contig_pos>
        <strand>+</strand>
        <context>AAAATCGAAA[G/T]ACGAGATCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAA</left_flank>
        <right_flank>ACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTACTATTCAAATAACCAATAGACTTTTTTACAGAGAGGCAATCAATTGGGTTCAGCAGTTCTACTGAAAAAATGCCACGTGTCAGCTCTCTGATTGTGTTTTTTACCTTCATGGTGACCCTTTTCGCTGTCAGTCATGCAGCCGGAGTCTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAATGCATGCTCAGCAATGGTAGACTTTCAAACATCTTATGATATAATAGTAATTTCAATACGACTTACTATAGGATTAGCAATAAAAGTTAGAACAAAT</canonical>
            <polymorphic>GTTTACTATTCAAATAACCAATAGACTTTTTTACAGAGAGGCAATCAATTGGGTTCAGCAGTTCTACTGAAAAAATGCCACGTGTCAGCTCTCTGATTGTGTTTTTTACCTTCATGGTGACCCTTTTCGCTGTCAGTCATGCAGCCGGAGTCTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAKACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAATGCATGCTCAGCAATGGTAGACTTTCAAACATCTTATGATATAATAGTAATTTCAATACGACTTACTATAGGATTAGCAATAAAAGTTAGAACAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGGTACAACACTACTGTACGAT</pcr_primer_p1>
		<pcr_primer_p2>TCTCGGATATTTGCTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>TGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGA</canonical_amplicon>
		<polymorphic_amplicon>TGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAKACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28603</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>97144</contig_pos>
        <strand>+</strand>
        <context>TTTTTGAGAC[C/T]RAAAAWAAYT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGAC</left_flank>
        <right_flank>AAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATGCAGCCGGAGTCTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAATGCATGCTCAGCAATGGTAGACTTTCAAACATCTTATGATATAATAGTAATTTCAATACGACTTACTATAGGATTAGCAATAAAAGTTAGAACAAATGCTTAACATCAACATGAAACAGTATTCATTTTTCTCTGAAATTCCAGATTCCGACGTGCTCGTTTGATGAGTTTCGACGGTGAAGCTCCTCAATACCTTCAACACTTGCTTCAGAATCTGAAACCGCGCTTCCGAA</canonical>
            <polymorphic>TCATGCAGCCGGAGTCTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACYAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAATGCATGCTCAGCAATGGTAGACTTTCAAACATCTTATGATATAATAGTAATTTCAATACGACTTACTATAGGATTAGCAATAAAAGTTAGAACAAATGCTTAACATCAACATGAAACAGTATTCATTTTTCTCTGAAATTCCAGATTCCGACGTGCTCGTTTGATGAGTTTCGACGGTGAAGCTCCTCAATACCTTCAACACTTGCTTCAGAATCTGAAACCGCGCTTCCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGTGGTATACGGTTGAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>GTTGGAAAAGGAAGATTTCTAGT</pcr_primer_p2>
		<pcr_amplicon_size>215</pcr_amplicon_size>
		<canonical_amplicon>CTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAAC</canonical_amplicon>
		<polymorphic_amplicon>CTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACYAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28604</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>97145</contig_pos>
        <strand>+</strand>
        <context>TTTTGAGACY[A/G]AAAAWAAYTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACC</left_flank>
        <right_flank>AAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGCAGCCGGAGTCTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAATGCATGCTCAGCAATGGTAGACTTTCAAACATCTTATGATATAATAGTAATTTCAATACGACTTACTATAGGATTAGCAATAAAAGTTAGAACAAATGCTTAACATCAACATGAAACAGTATTCATTTTTCTCTGAAATTCCAGATTCCGACGTGCTCGTTTGATGAGTTTCGACGGTGAAGCTCCTCAATACCTTCAACACTTGCTTCAGAATCTGAAACCGCGCTTCCGAAG</canonical>
            <polymorphic>CATGCAGCCGGAGTCTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCRAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAATGCATGCTCAGCAATGGTAGACTTTCAAACATCTTATGATATAATAGTAATTTCAATACGACTTACTATAGGATTAGCAATAAAAGTTAGAACAAATGCTTAACATCAACATGAAACAGTATTCATTTTTCTCTGAAATTCCAGATTCCGACGTGCTCGTTTGATGAGTTTCGACGGTGAAGCTCCTCAATACCTTCAACACTTGCTTCAGAATCTGAAACCGCGCTTCCGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGTGGTATACGGTTGAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>GTTGGAAAAGGAAGATTTCTAGT</pcr_primer_p2>
		<pcr_amplicon_size>215</pcr_amplicon_size>
		<canonical_amplicon>CTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAAC</canonical_amplicon>
		<polymorphic_amplicon>CTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCRAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28605</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>97150</contig_pos>
        <strand>+</strand>
        <context>AGACYRAAAA[A/T]AAYTAAAART</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAA</left_flank>
        <right_flank>AATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCGGAGTCTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAATGCATGCTCAGCAATGGTAGACTTTCAAACATCTTATGATATAATAGTAATTTCAATACGACTTACTATAGGATTAGCAATAAAAGTTAGAACAAATGCTTAACATCAACATGAAACAGTATTCATTTTTCTCTGAAATTCCAGATTCCGACGTGCTCGTTTGATGAGTTTCGACGGTGAAGCTCCTCAATACCTTCAACACTTGCTTCAGAATCTGAAACCGCGCTTCCGAAGATCTG</canonical>
            <polymorphic>AGCCGGAGTCTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAWAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAATGCATGCTCAGCAATGGTAGACTTTCAAACATCTTATGATATAATAGTAATTTCAATACGACTTACTATAGGATTAGCAATAAAAGTTAGAACAAATGCTTAACATCAACATGAAACAGTATTCATTTTTCTCTGAAATTCCAGATTCCGACGTGCTCGTTTGATGAGTTTCGACGGTGAAGCTCCTCAATACCTTCAACACTTGCTTCAGAATCTGAAACCGCGCTTCCGAAGATCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGTGGTATACGGTTGAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>GTTGGAAAAGGAAGATTTCTAGT</pcr_primer_p2>
		<pcr_amplicon_size>215</pcr_amplicon_size>
		<canonical_amplicon>CTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAAC</canonical_amplicon>
		<polymorphic_amplicon>CTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAWAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28606</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>97159</contig_pos>
        <strand>+</strand>
        <context>AWAAYTAAAA[A/G]TCAAGGAART</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAA</left_flank>
        <right_flank>TCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAATGCATGCTCAGCAATGGTAGACTTTCAAACATCTTATGATATAATAGTAATTTCAATACGACTTACTATAGGATTAGCAATAAAAGTTAGAACAAATGCTTAACATCAACATGAAACAGTATTCATTTTTCTCTGAAATTCCAGATTCCGACGTGCTCGTTTGATGAGTTTCGACGGTGAAGCTCCTCAATACCTTCAACACTTGCTTCAGAATCTGAAACCGCGCTTCCGAAGATCTGTTTGATGCA</canonical>
            <polymorphic>CTCCGGTTATGATAACATTTATCAAGTTTTGGCTCCGAGGTTTGTATTATGTGGGAAAACTAGATAGGGAGGAATTGAGAAGATTGAATGGTGGTCTGGGGAACAGTAAATTGAAAATACTTGAATTTAAAAATTCTTTTGTTGTTTCAAGAAAGCCATTTTCGAGAACAGTAGGCTTTGACAGCATTGGGTACAACACTACTGTACGATATGAAAAAAAAAGGAATTTATGATTTAAAGGTGGTGTATGCTTAATTAGTGCAATCAATTAAACTCAATTAATTTAAAAACTCTGAATTTTTTATGAAAATTTAATGTAAAATTGCATAAAACCAGAAAAAATCGAAAAACGAGATCTTCCTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAARTCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAACTTATTTCGCTTTTGAAACAGGTCATGTTTTCTGGTTTTTGTTTTAAAAAATTACACAGAGTAGAGGGAATTATGGGAGATTGGATGATAGCCAACTATACAGTCTCTGAAACAGCAAATTTGAAATAGATTTAATGAAATTTGTAAGATACCAGAAAATCTAATGCGGTTTCAAGAATGCATGCTCAGCAATGGTAGACTTTCAAACATCTTATGATATAATAGTAATTTCAATACGACTTACTATAGGATTAGCAATAAAAGTTAGAACAAATGCTTAACATCAACATGAAACAGTATTCATTTTTCTCTGAAATTCCAGATTCCGACGTGCTCGTTTGATGAGTTTCGACGGTGAAGCTCCTCAATACCTTCAACACTTGCTTCAGAATCTGAAACCGCGCTTCCGAAGATCTGTTTGATGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGTGGTATACGGTTGAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>GTTGGAAAAGGAAGATTTCTAGT</pcr_primer_p2>
		<pcr_amplicon_size>215</pcr_amplicon_size>
		<canonical_amplicon>CTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAAATCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAAC</canonical_amplicon>
		<polymorphic_amplicon>CTAGTGGTATACGGTTGAAGAAAAGATTTCTAGTCGCTAACCACGGTTAACCGAGATTTCAAATCTAGTTTTATTCAGATTTTTTCCAGCCTGTTTTTTGGAAAATTTTCACTTTTTTTGAGACCAAAAAAAATTAAAARTCAAGGAAATTCAAAGCAAATATCCGAGAATCGAATAAAATTCAACTCGAGGACTAGAAATCTTCCTTTTCCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28607</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>98335</contig_pos>
        <strand>+</strand>
        <context>CTCTTCACGA[A/C]TTTTTCTCCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGCTAAGAAATGTCGCGAATTCAGGTGACCGAATATCACCTCTTCACGA</left_flank>
        <right_flank>TTTTTCTCCTTTTCAATGAATTCTTCTTTTATTCCCTGTATTTTATGTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGCGCGAAAAATTGACCCATCTTCTTGAAAAATGAATAAATACATCTGATTGTTGTTTACGCTATAATATATGTGAAAAGCAGTTACCCATCATTGCCCGAATAAATGAAAAGAGTACGAATAAAATAAAAACAACAAAATGAAACAGTTAGATTTTAAAAAAACTAATTTTCGAATTTTCGCTGCAACGAAAATCAGAGAATCAAGTAAGCATAACTAGCAGGTTTAAAGTTAGATATTATTGTTTTCCGAAAAAATTAGACTTGAGTCGCAGAGAGTTAATCAAAAAATCTCTCTGCGTCTCCACCGAATATGCGCTATTTAGGCTTGCCGCTTCGAGATACCTACCGTATACAGGCTGCAAAAAATACACTCCAACTCTAAAATGTACATCCTGGAACAGCAAAAAATTGTTTTCTGAGCATTATATATCTTTATAGTTCAATAATTGCTAAGAAATGTCGCGAATTCAGGTGACCGAATATCACCTCTTCACGACTTTTTCTCCTTTTCAATGAATTCTTCTTTTATTCCCTGTATTTTATGTAATTATATTCACCAACGCCGACGCCGCCCACAACAATGCCGATTTGAATCACCCGCCAATTTGAGGATTACTGTACCCTGCACATCTAACTCTAAACGCGAACCAAGGAAATGCGCCCGTTTTTGGGATCAATTTAGACTCTTCAGTCATTCTCGTTTCTCCCCCAAAACCCATGTTTCTCGTTCCTATTTTTACCTATATTTTATATAATATTATTCTGGTGTATTCTTGTCGGCAGAGATGATTCTGGCAACAGAATCGTTTCCGTTGTAGGCAAAGTTAGGTCAATAAATTCGGTGTGTCTTAAATTCTGTGTTCCTGTTGTCTTTTCTCTCTTTTAAGGTTTGTTGTGTCTCTAGGGCTGTTTTAGAGCAGTATGACTGCAAAATAAGAAATGAATGCTCTGAAATGTGCATTTTGGAACAGCAATTTTTTTATTCGAAAGTTTCTCT</canonical>
            <polymorphic>CGGCGCGAAAAATTGACCCATCTTCTTGAAAAATGAATAAATACATCTGATTGTTGTTTACGCTATAATATATGTGAAAAGCAGTTACCCATCATTGCCCGAATAAATGAAAAGAGTACGAATAAAATAAAAACAACAAAATGAAACAGTTAGATTTTAAAAAAACTAATTTTCGAATTTTCGCTGCAACGAAAATCAGAGAATCAAGTAAGCATAACTAGCAGGTTTAAAGTTAGATATTATTGTTTTCCGAAAAAATTAGACTTGAGTCGCAGAGAGTTAATCAAAAAATCTCTCTGCGTCTCCACCGAATATGCGCTATTTAGGCTTGCCGCTTCGAGATACCTACCGTATACAGGCTGCAAAAAATACACTCCAACTCTAAAATGTACATCCTGGAACAGCAAAAAATTGTTTTCTGAGCATTATATATCTTTATAGTTCAATAATTGCTAAGAAATGTCGCGAATTCAGGTGACCGAATATCACCTCTTCACGAMTTTTTCTCCTTTTCAATGAATTCTTCTTTTATTCCCTGTATTTTATGTAATTATATTCACCAACGCCGACGCCGCCCACAACAATGCCGATTTGAATCACCCGCCAATTTGAGGATTACTGTACCCTGCACATCTAACTCTAAACGCGAACCAAGGAAATGCGCCCGTTTTTGGGATCAATTTAGACTCTTCAGTCATTCTCGTTTCTCCCCCAAAACCCATGTTTCTCGTTCCTATTTTTACCTATATTTTATATAATATTATTCTGGTGTATTCTTGTCGGCAGAGATGATTCTGGCAACAGAATCGTTTCCGTTGTAGGCAAAGTTAGGTCAATAAATTCGGTGTGTCTTAAATTCTGTGTTCCTGTTGTCTTTTCTCTCTTTTAAGGTTTGTTGTGTCTCTAGGGCTGTTTTAGAGCAGTATGACTGCAAAATAAGAAATGAATGCTCTGAAATGTGCATTTTGGAACAGCAATTTTTTTATTCGAAAGTTTCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTACATCCTGGAACAGC</pcr_primer_p1>
		<pcr_primer_p2>TAGATGTGCAGGGTACAGTAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATGTACATCCTGGAACAGCAAAAAATTGTTTTCTGAGCATTATATATCTTTATAGTTCAATAATTGCTAAGAAATGTCGCGAATTCAGGTGACCGAATATCACCTCTTCACGACTTTTTCTCCTTTTCAATGAATTCTTCTTTTATTCCCTGTATTTTATGTAATTATATTCACCAACGCCGACGCCGCCCACAACAATGCCGATTTGAATCACCCGCCAATTTGAGGATTACTGTACCCTGCACATCTA</canonical_amplicon>
		<polymorphic_amplicon>AATGTACATCCTGGAACAGCAAAAAATTGTTTTCTGAGCATTATATATCTTTATAGTTCAATAATTGCTAAGAAATGTCGCGAATTCAGGTGACCGAATATCACCTCTTCACGAMTTTTTCTCCTTTTCAATGAATTCTTCTTTTATTCCCTGTATTTTATGTAATTATATTCACCAACGCCGACGCCGCCCACAACAATGCCGATTTGAATCACCCGCCAATTTGAGGATTACTGTACCCTGCACATCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28608</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>100100</contig_pos>
        <strand></strand>
        <context>aattgagctc[A/G]argttgacaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGATTGGCGGCTTTTTTATATCTGCCACAGGAACCGATAGAATTGAGCTC</left_flank>
        <right_flank>AAGTTGACAATTGGGTTGGTTTCTATTAAAGGAAATACAGTAACTGGCTC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGATTTAGTTACTGTTGAGCAATTGCTCAAGGCCCTACTCTCTGTCCTTTATTCTATGTATTATTCTATGTTCATTTATGCTAGACATGTCTTATTCTCCTCTCCCTATTTCTTTTTAATGGTCACTCTAGTTCTAGTTCATTCTATTATTTTACATTTCCTCTCACTAGAATTCATTATTTATCCATTTGGAATCTGCTTATCATGTATTTTAATGTATTTTAATGTTTTTTTTCCTTTTTTTTCCACGATTCTTGCAATCGTAAATAAATAAATAAATAAGTAAATAAAATGTAATACTCATGCTAACTCTGAAACGGGATCCAAGATATTTTCCTGACATCCCCTACACTATCACTTTGAGCTCAAATATCTCAATTTCAGTAAGAGATATCAAAAGTCAGTCAATTGATAAAATGTTTGTTACTATATCACCAATATTTTATAGATTGGCGGCTTTTTTATATCTGCCACAGGAACCGATAGAATTGAGCTCAAAGTTGACAATTGGGTTGGTTTCTATTAAAGGAAATACAGTAACTGGCTCAAAGTAAAAGTCGTGAAATTTTTACAGTTTCCGTAAGGCCTCTTCTTGTTTTGAAGTTTAGTTTGAACATTGGATTGATCGCCGGTGTTTGCAAAATAAATAAAAAATCTTCACCTGAATCATGGAAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATT</canonical>
            <polymorphic>AAATGATTTAGTTACTGTTGAGCAATTGCTCAAGGCCCTACTCTCTGTCCTTTATTCTATGTATTATTCTATGTTCATTTATGCTAGACATGTCTTATTCTCCTCTCCCTATTTCTTTTTAATGGTCACTCTAGTTCTAGTTCATTCTATTATTTTACATTTCCTCTCACTAGAATTCATTATTTATCCATTTGGAATCTGCTTATCATGTATTTTAATGTATTTTAATGTTTTTTTTCCTTTTTTTTCCACGATTCTTGCAATCGTAAATAAATAAATAAATAAGTAAATAAAATGTAATACTCATGCTAACTCTGAAACGGGATCCAAGATATTTTCCTGACATCCCCTACACTATCACTTTGAGCTCAAATATCTCAATTTCAGTAAGAGATATCAAAAGTCAGTCAATTGATAAAATGTTTGTTACTATATCACCAATATTTTATAGATTGGCGGCTTTTTTATATCTGCCACAGGAACCGATAGAATTGAGCTCRAAGTTGACAATTGGGTTGGTTTCTATTAAAGGAAATACAGTAACTGGCTCAAAGTAAAAGTCGTGAAATTTTTACAGTTTCCGTAAGGCCTCTTCTTGTTTTGAAGTTTAGTTTGAACATTGGATTGATCGCCGGTGTTTGCAAAATAAATAAAAAATCTTCACCTGAATCATGGAAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAATACTCATGCTAACTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TACTTTGAGCCAGTTACTGTATTT</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>TGTAATACTCATGCTAACTCTGAAACGGGATCCAAGATATTTTCCTGACATCCCCTACACTATCACTTTGAGCTCAAATATCTCAATTTCAGTAAGAGATATCAAAAGTCAGTCAATTGATAAAATGTTTGTTACTATATCACCAATATTTTATAGATTGGCGGCTTTTTTATATCTGCCACAGGAACCGATAGAATTGAGCTCAAAGTTGACAATTGGGTTGGTTTCTATTAAAGGAAATACAGTAACTGGCTCAAAGTA</canonical_amplicon>
		<polymorphic_amplicon>TGTAATACTCATGCTAACTCTGAAACGGGATCCAAGATATTTTCCTGACATCCCCTACACTATCACTTTGAGCTCAAATATCTCAATTTCAGTAAGAGATATCAAAAGTCAGTCAATTGATAAAATGTTTGTTACTATATCACCAATATTTTATAGATTGGCGGCTTTTTTATATCTGCCACAGGAACCGATAGAATTGAGCTCRAAGTTGACAATTGGGTTGGTTTCTATTAAAGGAAATACAGTAACTGGCTCAAAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28609</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>100102</contig_pos>
        <strand></strand>
        <context>ttgagctcra[A/G]gttgacaatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGGCGGCTTTTTTATATCTGCCACAGGAACCGATAGAATTGAGCTCAA</left_flank>
        <right_flank>GTTGACAATTGGGTTGGTTTCTATTAAAGGAAATACAGTAACTGGCTCAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGATTTAGTTACTGTTGAGCAATTGCTCAAGGCCCTACTCTCTGTCCTTTATTCTATGTATTATTCTATGTTCATTTATGCTAGACATGTCTTATTCTCCTCTCCCTATTTCTTTTTAATGGTCACTCTAGTTCTAGTTCATTCTATTATTTTACATTTCCTCTCACTAGAATTCATTATTTATCCATTTGGAATCTGCTTATCATGTATTTTAATGTATTTTAATGTTTTTTTTCCTTTTTTTTCCACGATTCTTGCAATCGTAAATAAATAAATAAATAAGTAAATAAAATGTAATACTCATGCTAACTCTGAAACGGGATCCAAGATATTTTCCTGACATCCCCTACACTATCACTTTGAGCTCAAATATCTCAATTTCAGTAAGAGATATCAAAAGTCAGTCAATTGATAAAATGTTTGTTACTATATCACCAATATTTTATAGATTGGCGGCTTTTTTATATCTGCCACAGGAACCGATAGAATTGAGCTCAAAGTTGACAATTGGGTTGGTTTCTATTAAAGGAAATACAGTAACTGGCTCAAAGTAAAAGTCGTGAAATTTTTACAGTTTCCGTAAGGCCTCTTCTTGTTTTGAAGTTTAGTTTGAACATTGGATTGATCGCCGGTGTTTGCAAAATAAATAAAAAATCTTCACCTGAATCATGGAAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGC</canonical>
            <polymorphic>ATGATTTAGTTACTGTTGAGCAATTGCTCAAGGCCCTACTCTCTGTCCTTTATTCTATGTATTATTCTATGTTCATTTATGCTAGACATGTCTTATTCTCCTCTCCCTATTTCTTTTTAATGGTCACTCTAGTTCTAGTTCATTCTATTATTTTACATTTCCTCTCACTAGAATTCATTATTTATCCATTTGGAATCTGCTTATCATGTATTTTAATGTATTTTAATGTTTTTTTTCCTTTTTTTTCCACGATTCTTGCAATCGTAAATAAATAAATAAATAAGTAAATAAAATGTAATACTCATGCTAACTCTGAAACGGGATCCAAGATATTTTCCTGACATCCCCTACACTATCACTTTGAGCTCAAATATCTCAATTTCAGTAAGAGATATCAAAAGTCAGTCAATTGATAAAATGTTTGTTACTATATCACCAATATTTTATAGATTGGCGGCTTTTTTATATCTGCCACAGGAACCGATAGAATTGAGCTCAARGTTGACAATTGGGTTGGTTTCTATTAAAGGAAATACAGTAACTGGCTCAAAGTAAAAGTCGTGAAATTTTTACAGTTTCCGTAAGGCCTCTTCTTGTTTTGAAGTTTAGTTTGAACATTGGATTGATCGCCGGTGTTTGCAAAATAAATAAAAAATCTTCACCTGAATCATGGAAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAATACTCATGCTAACTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTACTTTGAGCCAGTTACTGTATT</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>TGTAATACTCATGCTAACTCTGAAACGGGATCCAAGATATTTTCCTGACATCCCCTACACTATCACTTTGAGCTCAAATATCTCAATTTCAGTAAGAGATATCAAAAGTCAGTCAATTGATAAAATGTTTGTTACTATATCACCAATATTTTATAGATTGGCGGCTTTTTTATATCTGCCACAGGAACCGATAGAATTGAGCTCAAAGTTGACAATTGGGTTGGTTTCTATTAAAGGAAATACAGTAACTGGCTCAAAGTAA</canonical_amplicon>
		<polymorphic_amplicon>TGTAATACTCATGCTAACTCTGAAACGGGATCCAAGATATTTTCCTGACATCCCCTACACTATCACTTTGAGCTCAAATATCTCAATTTCAGTAAGAGATATCAAAAGTCAGTCAATTGATAAAATGTTTGTTACTATATCACCAATATTTTATAGATTGGCGGCTTTTTTATATCTGCCACAGGAACCGATAGAATTGAGCTCAARGTTGACAATTGGGTTGGTTTCTATTAAAGGAAATACAGTAACTGGCTCAAAGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28610</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>100117</contig_pos>
        <strand></strand>
        <context>acaattgggt[T/G]ggtttctatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATATCTGCCACAGGAACCGATAGAATTGAGCTCAAAGTTGACAATTGGGT</left_flank>
        <right_flank>GGTTTCTATTAAAGGAAATACAGTAACTGGCTCAAAGTAAAAGTCGTGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAGCAATTGCTCAAGGCCCTACTCTCTGTCCTTTATTCTATGTATTATTCTATGTTCATTTATGCTAGACATGTCTTATTCTCCTCTCCCTATTTCTTTTTAATGGTCACTCTAGTTCTAGTTCATTCTATTATTTTACATTTCCTCTCACTAGAATTCATTATTTATCCATTTGGAATCTGCTTATCATGTATTTTAATGTATTTTAATGTTTTTTTTCCTTTTTTTTCCACGATTCTTGCAATCGTAAATAAATAAATAAATAAGTAAATAAAATGTAATACTCATGCTAACTCTGAAACGGGATCCAAGATATTTTCCTGACATCCCCTACACTATCACTTTGAGCTCAAATATCTCAATTTCAGTAAGAGATATCAAAAGTCAGTCAATTGATAAAATGTTTGTTACTATATCACCAATATTTTATAGATTGGCGGCTTTTTTATATCTGCCACAGGAACCGATAGAATTGAGCTCAAAGTTGACAATTGGGTTGGTTTCTATTAAAGGAAATACAGTAACTGGCTCAAAGTAAAAGTCGTGAAATTTTTACAGTTTCCGTAAGGCCTCTTCTTGTTTTGAAGTTTAGTTTGAACATTGGATTGATCGCCGGTGTTTGCAAAATAAATAAAAAATCTTCACCTGAATCATGGAAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAA</canonical>
            <polymorphic>TTGAGCAATTGCTCAAGGCCCTACTCTCTGTCCTTTATTCTATGTATTATTCTATGTTCATTTATGCTAGACATGTCTTATTCTCCTCTCCCTATTTCTTTTTAATGGTCACTCTAGTTCTAGTTCATTCTATTATTTTACATTTCCTCTCACTAGAATTCATTATTTATCCATTTGGAATCTGCTTATCATGTATTTTAATGTATTTTAATGTTTTTTTTCCTTTTTTTTCCACGATTCTTGCAATCGTAAATAAATAAATAAATAAGTAAATAAAATGTAATACTCATGCTAACTCTGAAACGGGATCCAAGATATTTTCCTGACATCCCCTACACTATCACTTTGAGCTCAAATATCTCAATTTCAGTAAGAGATATCAAAAGTCAGTCAATTGATAAAATGTTTGTTACTATATCACCAATATTTTATAGATTGGCGGCTTTTTTATATCTGCCACAGGAACCGATAGAATTGAGCTCAAAGTTGACAATTGGGTKGGTTTCTATTAAAGGAAATACAGTAACTGGCTCAAAGTAAAAGTCGTGAAATTTTTACAGTTTCCGTAAGGCCTCTTCTTGTTTTGAAGTTTAGTTTGAACATTGGATTGATCGCCGGTGTTTGCAAAATAAATAAAAAATCTTCACCTGAATCATGGAAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAATACTCATGCTAACTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>AAATTTCACGACTTTTACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>276</pcr_amplicon_size>
		<canonical_amplicon>TGTAATACTCATGCTAACTCTGAAACGGGATCCAAGATATTTTCCTGACATCCCCTACACTATCACTTTGAGCTCAAATATCTCAATTTCAGTAAGAGATATCAAAAGTCAGTCAATTGATAAAATGTTTGTTACTATATCACCAATATTTTATAGATTGGCGGCTTTTTTATATCTGCCACAGGAACCGATAGAATTGAGCTCAAAGTTGACAATTGGGTTGGTTTCTATTAAAGGAAATACAGTAACTGGCTCAAAGTAAAAGTCGTGAAATTT</canonical_amplicon>
		<polymorphic_amplicon>TGTAATACTCATGCTAACTCTGAAACGGGATCCAAGATATTTTCCTGACATCCCCTACACTATCACTTTGAGCTCAAATATCTCAATTTCAGTAAGAGATATCAAAAGTCAGTCAATTGATAAAATGTTTGTTACTATATCACCAATATTTTATAGATTGGCGGCTTTTTTATATCTGCCACAGGAACCGATAGAATTGAGCTCAAAGTTGACAATTGGGTKGGTTTCTATTAAAGGAAATACAGTAACTGGCTCAAAGTAAAAGTCGTGAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28611</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>100677</contig_pos>
        <strand>+</strand>
        <context>TTGAACTCTC[A/C]AAAATGGAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTC</left_flank>
        <right_flank>AAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCGTAAGGCCTCTTCTTGTTTTGAAGTTTAGTTTGAACATTGGATTGATCGCCGGTGTTTGCAAAATAAATAAAAAATCTTCACCTGAATCATGGAAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCCAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCCTCATGTTAGCATCTATCCTCATGTTAGCGATAAAATCAAAAATTAACTGAAACCATATAGAATAAAAAATTTGGCTCCGCGTCACTTCGAAACCGCGACGTTTCGAAACTGGTCATTTCGAAACTACGTGACGCTTCGAAACCAGTCATTTCGAAACCGCTCGTTTCA</canonical>
            <polymorphic>TTTCCGTAAGGCCTCTTCTTGTTTTGAAGTTTAGTTTGAACATTGGATTGATCGCCGGTGTTTGCAAAATAAATAAAAAATCTTCACCTGAATCATGGAAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCMAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCCTCATGTTAGCATCTATCCTCATGTTAGCGATAAAATCAAAAATTAACTGAAACCATATAGAATAAAAAATTTGGCTCCGCGTCACTTCGAAACCGCGACGTTTCGAAACTGGTCATTTCGAAACTACGTGACGCTTCGAAACCAGTCATTTCGAAACCGCTCGTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTGCAAATTTGTGTAGAATTG</pcr_primer_p1>
		<pcr_primer_p2>GGATACGCTAACATGAGGATTA</pcr_primer_p2>
		<pcr_amplicon_size>391</pcr_amplicon_size>
		<canonical_amplicon>AACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCCAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCC</canonical_amplicon>
		<polymorphic_amplicon>AACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCMAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28612</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>100749</contig_pos>
        <strand></strand>
        <context>AAATCCATAg[A/G]gygccaaatc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAG</left_flank>
        <right_flank>GCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAAAAATCTTCACCTGAATCATGGAAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCCAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCCTCATGTTAGCATCTATCCTCATGTTAGCGATAAAATCAAAAATTAACTGAAACCATATAGAATAAAAAATTTGGCTCCGCGTCACTTCGAAACCGCGACGTTTCGAAACTGGTCATTTCGAAACTACGTGACGCTTCGAAACCAGTCATTTCGAAACCGCTCGTTTCAAAACCGAAAAAAAACACGGTCACGTGAAAATGAAAATAACAATTGGAAAATTTCAGTCTTAAAATTGAAGAA</canonical>
            <polymorphic>ATAAAAAATCTTCACCTGAATCATGGAAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCCAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGRGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCCTCATGTTAGCATCTATCCTCATGTTAGCGATAAAATCAAAAATTAACTGAAACCATATAGAATAAAAAATTTGGCTCCGCGTCACTTCGAAACCGCGACGTTTCGAAACTGGTCATTTCGAAACTACGTGACGCTTCGAAACCAGTCATTTCGAAACCGCTCGTTTCAAAACCGAAAAAAAACACGGTCACGTGAAAATGAAAATAACAATTGGAAAATTTCAGTCTTAAAATTGAAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCGGTAGTTTTGTAGTTGATAA</pcr_primer_p1>
		<pcr_primer_p2>GGATACGCTAACATGAGGATTA</pcr_primer_p2>
		<pcr_amplicon_size>325</pcr_amplicon_size>
		<canonical_amplicon>AGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCC</canonical_amplicon>
		<polymorphic_amplicon>AGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGRGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28613</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>100751</contig_pos>
        <strand></strand>
        <context>ATCCATAgrg[C/T]gccaaatcat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAG</left_flank>
        <right_flank>GCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAATCTTCACCTGAATCATGGAAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCCAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCCTCATGTTAGCATCTATCCTCATGTTAGCGATAAAATCAAAAATTAACTGAAACCATATAGAATAAAAAATTTGGCTCCGCGTCACTTCGAAACCGCGACGTTTCGAAACTGGTCATTTCGAAACTACGTGACGCTTCGAAACCAGTCATTTCGAAACCGCTCGTTTCAAAACCGAAAAAAAACACGGTCACGTGAAAATGAAAATAACAATTGGAAAATTTCAGTCTTAAAATTGAAGAAAA</canonical>
            <polymorphic>AAAAAATCTTCACCTGAATCATGGAAGACGCTCTCATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCCAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGYGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCCTCATGTTAGCATCTATCCTCATGTTAGCGATAAAATCAAAAATTAACTGAAACCATATAGAATAAAAAATTTGGCTCCGCGTCACTTCGAAACCGCGACGTTTCGAAACTGGTCATTTCGAAACTACGTGACGCTTCGAAACCAGTCATTTCGAAACCGCTCGTTTCAAAACCGAAAAAAAACACGGTCACGTGAAAATGAAAATAACAATTGGAAAATTTCAGTCTTAAAATTGAAGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>499 289 212</canonical_bands>
                <polymorphic_bands>788 212</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCGGTAGTTTTGTAGTTGATAA</pcr_primer_p1>
		<pcr_primer_p2>GGATACGCTAACATGAGGATTA</pcr_primer_p2>
		<pcr_amplicon_size>325</pcr_amplicon_size>
		<canonical_amplicon>AGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCC</canonical_amplicon>
		<polymorphic_amplicon>AGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGYGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28614</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>100786</contig_pos>
        <strand></strand>
        <context>gtatatctca[T/C]ttggatgatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCA</left_flank>
        <right_flank>TTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCCAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCCTCATGTTAGCATCTATCCTCATGTTAGCGATAAAATCAAAAATTAACTGAAACCATATAGAATAAAAAATTTGGCTCCGCGTCACTTCGAAACCGCGACGTTTCGAAACTGGTCATTTCGAAACTACGTGACGCTTCGAAACCAGTCATTTCGAAACCGCTCGTTTCAAAACCGAAAAAAAACACGGTCACGTGAAAATGAAAATAACAATTGGAAAATTTCAGTCTTAAAATTGAAGAAAAAAATTGCAGCGTGCAAATTTCGCAGTTTCGAAATG</canonical>
            <polymorphic>ATTTCATCTCGATGTGGAGACACTGGCTGTGTTAAACCGGACCATCCTTTTTCGTCGCGAAGCTTCACAAAGCTTCCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCCAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCAYTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCCTCATGTTAGCATCTATCCTCATGTTAGCGATAAAATCAAAAATTAACTGAAACCATATAGAATAAAAAATTTGGCTCCGCGTCACTTCGAAACCGCGACGTTTCGAAACTGGTCATTTCGAAACTACGTGACGCTTCGAAACCAGTCATTTCGAAACCGCTCGTTTCAAAACCGAAAAAAAACACGGTCACGTGAAAATGAAAATAACAATTGGAAAATTTCAGTCTTAAAATTGAAGAAAAAAATTGCAGCGTGCAAATTTCGCAGTTTCGAAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>498 493 9</canonical_bands>
                <polymorphic_bands>991 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAATCTGAATGAAATCCATA</pcr_primer_p1>
		<pcr_primer_p2>GGATACGCTAACATGAGGATTA</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>TCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCC</canonical_amplicon>
		<polymorphic_amplicon>TCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCAYTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28615</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>100861</contig_pos>
        <strand></strand>
        <context>acctgaaaat[T/G]ttcattctya</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAAT</left_flank>
        <right_flank>TTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCCAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCCTCATGTTAGCATCTATCCTCATGTTAGCGATAAAATCAAAAATTAACTGAAACCATATAGAATAAAAAATTTGGCTCCGCGTCACTTCGAAACCGCGACGTTTCGAAACTGGTCATTTCGAAACTACGTGACGCTTCGAAACCAGTCATTTCGAAACCGCTCGTTTCAAAACCGAAAAAAAACACGGTCACGTGAAAATGAAAATAACAATTGGAAAATTTCAGTCTTAAAATTGAAGAAAAAAATTGCAGCGTGCAAATTTCGCAGTTTCGAAATGACTGGTTTCGAAGTGTCGCGGTTTCGAAACGACTGGTTTCGAAATGACCGGTTTCGAAATGACCGGTTTCGAAGT</canonical>
            <polymorphic>CCAGGTTCACGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCCAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATKTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCCTCATGTTAGCATCTATCCTCATGTTAGCGATAAAATCAAAAATTAACTGAAACCATATAGAATAAAAAATTTGGCTCCGCGTCACTTCGAAACCGCGACGTTTCGAAACTGGTCATTTCGAAACTACGTGACGCTTCGAAACCAGTCATTTCGAAACCGCTCGTTTCAAAACCGAAAAAAAACACGGTCACGTGAAAATGAAAATAACAATTGGAAAATTTCAGTCTTAAAATTGAAGAAAAAAATTGCAGCGTGCAAATTTCGCAGTTTCGAAATGACTGGTTTCGAAGTGTCGCGGTTTCGAAACGACTGGTTTCGAAATGACCGGTTTCGAAATGACCGGTTTCGAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>219 156 149 139 108 95 93 41</canonical_bands>
                <polymorphic_bands>358 156 149 108 95 93 41</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>192 141 105 102 95 83 82 73 34 27 14 14 13 11 8 6</canonical_bands>
                <polymorphic_bands>226 141 105 102 95 83 82 73 27 14 14 13 11 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAATCTGAATGAAATCCATA</pcr_primer_p1>
		<pcr_primer_p2>GGATACGCTAACATGAGGATTA</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>TCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCC</canonical_amplicon>
		<polymorphic_amplicon>TCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATKTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28616</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>100870</contig_pos>
        <strand></strand>
        <context>tkttcattct[T/C]atctaacaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCT</left_flank>
        <right_flank>ATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCCAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCCTCATGTTAGCATCTATCCTCATGTTAGCGATAAAATCAAAAATTAACTGAAACCATATAGAATAAAAAATTTGGCTCCGCGTCACTTCGAAACCGCGACGTTTCGAAACTGGTCATTTCGAAACTACGTGACGCTTCGAAACCAGTCATTTCGAAACCGCTCGTTTCAAAACCGAAAAAAAACACGGTCACGTGAAAATGAAAATAACAATTGGAAAATTTCAGTCTTAAAATTGAAGAAAAAAATTGCAGCGTGCAAATTTCGCAGTTTCGAAATGACTGGTTTCGAAGTGTCGCGGTTTCGAAACGACTGGTTTCGAAATGACCGGTTTCGAAATGACCGGTTTCGAAGTGTCGCGGTT</canonical>
            <polymorphic>CGAGCTTCAATAATATCGTAATCTGGATCTATATGGTTTCTTCCACTGGTTTTTAGAAGAAGCTCGTTGTTGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCCAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTYATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCCTCATGTTAGCATCTATCCTCATGTTAGCGATAAAATCAAAAATTAACTGAAACCATATAGAATAAAAAATTTGGCTCCGCGTCACTTCGAAACCGCGACGTTTCGAAACTGGTCATTTCGAAACTACGTGACGCTTCGAAACCAGTCATTTCGAAACCGCTCGTTTCAAAACCGAAAAAAAACACGGTCACGTGAAAATGAAAATAACAATTGGAAAATTTCAGTCTTAAAATTGAAGAAAAAAATTGCAGCGTGCAAATTTCGCAGTTTCGAAATGACTGGTTTCGAAGTGTCGCGGTTTCGAAACGACTGGTTTCGAAATGACCGGTTTCGAAATGACCGGTTTCGAAGTGTCGCGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAATCTGAATGAAATCCATA</pcr_primer_p1>
		<pcr_primer_p2>GGATACGCTAACATGAGGATTA</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>TCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCC</canonical_amplicon>
		<polymorphic_amplicon>TCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTYATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28617</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>100940</contig_pos>
        <strand>+</strand>
        <context>tggtgaaatC[C/T]ATTTTGAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATC</left_flank>
        <right_flank>ATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAA</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCCAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCCTCATGTTAGCATCTATCCTCATGTTAGCGATAAAATCAAAAATTAACTGAAACCATATAGAATAAAAAATTTGGCTCCGCGTCACTTCGAAACCGCGACGTTTCGAAACTGGTCATTTCGAAACTACGTGACGCTTCGAAACCAGTCATTTCGAAACCGCTCGTTTCAAAACCGAAAAAAAACACGGTCACGTGAAAATGAAAATAACAATTGGAAAATTTCAGTCTTAAAATTGAAGAAAAAAATTGCAGCGTGCAAATTTCGCAGTTTCGAAATGACTGGTTTCGAAGTGTCGCGGTTTCGAAACGACTGGTTTCGAAATGACCGGTTTCGAAATGACCGGTTTCGAAGTGTCGCGGTTTCGAAGTGACGCGGAGCCAAAAATTTTCAAATGTTTCAAACGGTTTTTTTTTGAAATTTCCGCCAAACCA</canonical>
            <polymorphic>TGTTAATTGAGTTATGGGCGGCGCGGTGTTTGAAATAGGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCCAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCYATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCCTCATGTTAGCATCTATCCTCATGTTAGCGATAAAATCAAAAATTAACTGAAACCATATAGAATAAAAAATTTGGCTCCGCGTCACTTCGAAACCGCGACGTTTCGAAACTGGTCATTTCGAAACTACGTGACGCTTCGAAACCAGTCATTTCGAAACCGCTCGTTTCAAAACCGAAAAAAAACACGGTCACGTGAAAATGAAAATAACAATTGGAAAATTTCAGTCTTAAAATTGAAGAAAAAAATTGCAGCGTGCAAATTTCGCAGTTTCGAAATGACTGGTTTCGAAGTGTCGCGGTTTCGAAACGACTGGTTTCGAAATGACCGGTTTCGAAATGACCGGTTTCGAAGTGTCGCGGTTTCGAAGTGACGCGGAGCCAAAAATTTTCAAATGTTTCAAACGGTTTTTTTTTGAAATTTCCGCCAAACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAATCTGAATGAAATCCATA</pcr_primer_p1>
		<pcr_primer_p2>GGATACGCTAACATGAGGATTA</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>TCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCC</canonical_amplicon>
		<polymorphic_amplicon>TCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCYATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28618</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>100977</contig_pos>
        <strand>+</strand>
        <context>GAAAGTTTTG[A/G]ATGKTTTTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTG</left_flank>
        <right_flank>ATGGTTTTGCTAATCCTCATGTTAGCGTATCCTCATGTTAGCATCTATCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCCAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCCTCATGTTAGCATCTATCCTCATGTTAGCGATAAAATCAAAAATTAACTGAAACCATATAGAATAAAAAATTTGGCTCCGCGTCACTTCGAAACCGCGACGTTTCGAAACTGGTCATTTCGAAACTACGTGACGCTTCGAAACCAGTCATTTCGAAACCGCTCGTTTCAAAACCGAAAAAAAACACGGTCACGTGAAAATGAAAATAACAATTGGAAAATTTCAGTCTTAAAATTGAAGAAAAAAATTGCAGCGTGCAAATTTCGCAGTTTCGAAATGACTGGTTTCGAAGTGTCGCGGTTTCGAAACGACTGGTTTCGAAATGACCGGTTTCGAAATGACCGGTTTCGAAGTGTCGCGGTTTCGAAGTGACGCGGAGCCAAAAATTTTCAAATGTTTCAAACGGTTTTTTTTTGAAATTTCCGCCAAACCATTTGGCAATCCCAGTTTCTTTACTTTGAATTAACAGA</canonical>
            <polymorphic>GGCTTCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCCAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGRATGGTTTTGCTAATCCTCATGTTAGCGTATCCTCATGTTAGCATCTATCCTCATGTTAGCGATAAAATCAAAAATTAACTGAAACCATATAGAATAAAAAATTTGGCTCCGCGTCACTTCGAAACCGCGACGTTTCGAAACTGGTCATTTCGAAACTACGTGACGCTTCGAAACCAGTCATTTCGAAACCGCTCGTTTCAAAACCGAAAAAAAACACGGTCACGTGAAAATGAAAATAACAATTGGAAAATTTCAGTCTTAAAATTGAAGAAAAAAATTGCAGCGTGCAAATTTCGCAGTTTCGAAATGACTGGTTTCGAAGTGTCGCGGTTTCGAAACGACTGGTTTCGAAATGACCGGTTTCGAAATGACCGGTTTCGAAGTGTCGCGGTTTCGAAGTGACGCGGAGCCAAAAATTTTCAAATGTTTCAAACGGTTTTTTTTTGAAATTTCCGCCAAACCATTTGGCAATCCCAGTTTCTTTACTTTGAATTAACAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAATCTGAATGAAATCCATA</pcr_primer_p1>
		<pcr_primer_p2>ATGAGGATAGATGCTAACATGAG</pcr_primer_p2>
		<pcr_amplicon_size>306</pcr_amplicon_size>
		<canonical_amplicon>TCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCCTCATGTTAGCATCTATCCTCAT</canonical_amplicon>
		<polymorphic_amplicon>TCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGRATGGTTTTGCTAATCCTCATGTTAGCGTATCCTCATGTTAGCATCTATCCTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28619</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>100981</contig_pos>
        <strand>+</strand>
        <context>GTTTTGRATG[G/T]TTTTGCTAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATG</left_flank>
        <right_flank>TTTTGCTAATCCTCATGTTAGCGTATCCTCATGTTAGCATCTATCCTCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCCAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCCTCATGTTAGCATCTATCCTCATGTTAGCGATAAAATCAAAAATTAACTGAAACCATATAGAATAAAAAATTTGGCTCCGCGTCACTTCGAAACCGCGACGTTTCGAAACTGGTCATTTCGAAACTACGTGACGCTTCGAAACCAGTCATTTCGAAACCGCTCGTTTCAAAACCGAAAAAAAACACGGTCACGTGAAAATGAAAATAACAATTGGAAAATTTCAGTCTTAAAATTGAAGAAAAAAATTGCAGCGTGCAAATTTCGCAGTTTCGAAATGACTGGTTTCGAAGTGTCGCGGTTTCGAAACGACTGGTTTCGAAATGACCGGTTTCGAAATGACCGGTTTCGAAGTGTCGCGGTTTCGAAGTGACGCGGAGCCAAAAATTTTCAAATGTTTCAAACGGTTTTTTTTTGAAATTTCCGCCAAACCATTTGGCAATCCCAGTTTCTTTACTTTGAATTAACAGAATTT</canonical>
            <polymorphic>TCCAGAAGATTGTTCGGTCGTGATTCAACACCTGAAAATTTGAATTGTGGGAATACAAGTGGGGTCCCAATATTTTGAAAAATCCTTCAGAAAACATGAAACCGTAACGTTTGTGGATTGCAAAGAAAGTGTCAAATAACTGCAAATTTGTGTAGAATTGCAGTTTTTAATATTTCAAATGATTTTTGAACTCTCCAAAATGGAGCGGTAGTTTTGTAGTTGATAACTTTTTTTACGAATTCATTCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGKTTTTGCTAATCCTCATGTTAGCGTATCCTCATGTTAGCATCTATCCTCATGTTAGCGATAAAATCAAAAATTAACTGAAACCATATAGAATAAAAAATTTGGCTCCGCGTCACTTCGAAACCGCGACGTTTCGAAACTGGTCATTTCGAAACTACGTGACGCTTCGAAACCAGTCATTTCGAAACCGCTCGTTTCAAAACCGAAAAAAAACACGGTCACGTGAAAATGAAAATAACAATTGGAAAATTTCAGTCTTAAAATTGAAGAAAAAAATTGCAGCGTGCAAATTTCGCAGTTTCGAAATGACTGGTTTCGAAGTGTCGCGGTTTCGAAACGACTGGTTTCGAAATGACCGGTTTCGAAATGACCGGTTTCGAAGTGTCGCGGTTTCGAAGTGACGCGGAGCCAAAAATTTTCAAATGTTTCAAACGGTTTTTTTTTGAAATTTCCGCCAAACCATTTGGCAATCCCAGTTTCTTTACTTTGAATTAACAGAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAATCTGAATGAAATCCATA</pcr_primer_p1>
		<pcr_primer_p2>TATCGCTAACATGAGGATAGATG</pcr_primer_p2>
		<pcr_amplicon_size>316</pcr_amplicon_size>
		<canonical_amplicon>TCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGGTTTTGCTAATCCTCATGTTAGCGTATCCTCATGTTAGCATCTATCCTCATGTTAGCGATA</canonical_amplicon>
		<polymorphic_amplicon>TCAAATCTGAATGAAATCCATAGAGCGCCAAATCATAGCACTTTTAGAAGGTATATCTCATTTGGATGATTTTTTAACAATAAAGTTGTCAACTACAAAATTGAAGCTCTATTTATGTTTAGTGGACCTGAAAATTTTCATTCTTATCTAACAATATCTTCTATATTTCTTAGACATCCAAAGTCAGTCATTTAAAATCAATATTGGTGAAATCCATTTTGAGAAAAAATCTGCACAAACCGAAAGTTTTGTATGKTTTTGCTAATCCTCATGTTAGCGTATCCTCATGTTAGCATCTATCCTCATGTTAGCGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28620</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>129280</contig_pos>
        <strand>+</strand>
        <context>ATTCAAAAAC[G/T]GTTCAAGCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTCGGGACACCTTTTTGATGCCGACATTTTCCGACAGAAATTCAAAAAC</left_flank>
        <right_flank>GTTCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAGGAACACATAAATTCGAAGATTCGGAAATTTAAAAACTCAGAAATTCAGAAATTTAGTTAGAGGGGCCAAGAAAAATTCTATTTTATTGAATTTTTGGCCAAAATTTGGGGATTTTTGAGTCAACAGTTTTCAAAAAAAAACTTACATTTTCAGAAAAATAAAAAAGAAAGAAATTCTGGATTGATACACACTCAACCTCAGAATAACTAGAAATATACATAGAATATCAGAAAAATAATTTTGAAGCAGAAAAAATCAGACATCCGCTTAGAATAAGAATAATGAATAATTGTGAGCTAGTCGAGGTCTTTTATACCATGAAAAGAGACGCAGAGAATAAATAAAAGGACAATGTTATTGGCGGCGACAGGGTGTCGGTACCCGACAAAGGGATCGAACGGTGGAGAAGAAGAGACGCAGAGAAAATGTTATTTTTACCTTTTTGTCGGGACACCTTTTTGATGCCGACATTTTCCGACAGAAATTCAAAAACGGTTCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCGTTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTACTCTTGGAATCTGAAAATTGACTTTTTTCAAGCAAGAACTTGACATAAGCAATCCGTTACCTCTCCACACACTTGATGCAATATGGCTGCAGAGTATTGGTTG</canonical>
            <polymorphic>TTTGAGGAACACATAAATTCGAAGATTCGGAAATTTAAAAACTCAGAAATTCAGAAATTTAGTTAGAGGGGCCAAGAAAAATTCTATTTTATTGAATTTTTGGCCAAAATTTGGGGATTTTTGAGTCAACAGTTTTCAAAAAAAAACTTACATTTTCAGAAAAATAAAAAAGAAAGAAATTCTGGATTGATACACACTCAACCTCAGAATAACTAGAAATATACATAGAATATCAGAAAAATAATTTTGAAGCAGAAAAAATCAGACATCCGCTTAGAATAAGAATAATGAATAATTGTGAGCTAGTCGAGGTCTTTTATACCATGAAAAGAGACGCAGAGAATAAATAAAAGGACAATGTTATTGGCGGCGACAGGGTGTCGGTACCCGACAAAGGGATCGAACGGTGGAGAAGAAGAGACGCAGAGAAAATGTTATTTTTACCTTTTTGTCGGGACACCTTTTTGATGCCGACATTTTCCGACAGAAATTCAAAAACKGTTCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCGTTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTACTCTTGGAATCTGAAAATTGACTTTTTTCAAGCAAGAACTTGACATAAGCAATCCGTTACCTCTCCACACACTTGATGCAATATGGCTGCAGAGTATTGGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTGAGTCAACAGTTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>CCCATACTAAAGGAGAAGAAGAC</pcr_primer_p2>
		<pcr_amplicon_size>501</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTGAGTCAACAGTTTTCAAAAAAAAACTTACATTTTCAGAAAAATAAAAAAGAAAGAAATTCTGGATTGATACACACTCAACCTCAGAATAACTAGAAATATACATAGAATATCAGAAAAATAATTTTGAAGCAGAAAAAATCAGACATCCGCTTAGAATAAGAATAATGAATAATTGTGAGCTAGTCGAGGTCTTTTATACCATGAAAAGAGACGCAGAGAATAAATAAAAGGACAATGTTATTGGCGGCGACAGGGTGTCGGTACCCGACAAAGGGATCGAACGGTGGAGAAGAAGAGACGCAGAGAAAATGTTATTTTTACCTTTTTGTCGGGACACCTTTTTGATGCCGACATTTTCCGACAGAAATTCAAAAACGGTTCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCGTTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGG</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTGAGTCAACAGTTTTCAAAAAAAAACTTACATTTTCAGAAAAATAAAAAAGAAAGAAATTCTGGATTGATACACACTCAACCTCAGAATAACTAGAAATATACATAGAATATCAGAAAAATAATTTTGAAGCAGAAAAAATCAGACATCCGCTTAGAATAAGAATAATGAATAATTGTGAGCTAGTCGAGGTCTTTTATACCATGAAAAGAGACGCAGAGAATAAATAAAAGGACAATGTTATTGGCGGCGACAGGGTGTCGGTACCCGACAAAGGGATCGAACGGTGGAGAAGAAGAGACGCAGAGAAAATGTTATTTTTACCTTTTTGTCGGGACACCTTTTTGATGCCGACATTTTCCGACAGAAATTCAAAAACKGTTCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCGTTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28621</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>129327</contig_pos>
        <strand>+</strand>
        <context>GCACACATTC[A/T]CCAGCGCCCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACGGTTCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTC</left_flank>
        <right_flank>CCAGCGCCCTCCAAATCGTTGTGTGTTTTATATTATTTTTGCCCTTAGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTCAGAAATTTAGTTAGAGGGGCCAAGAAAAATTCTATTTTATTGAATTTTTGGCCAAAATTTGGGGATTTTTGAGTCAACAGTTTTCAAAAAAAAACTTACATTTTCAGAAAAATAAAAAAGAAAGAAATTCTGGATTGATACACACTCAACCTCAGAATAACTAGAAATATACATAGAATATCAGAAAAATAATTTTGAAGCAGAAAAAATCAGACATCCGCTTAGAATAAGAATAATGAATAATTGTGAGCTAGTCGAGGTCTTTTATACCATGAAAAGAGACGCAGAGAATAAATAAAAGGACAATGTTATTGGCGGCGACAGGGTGTCGGTACCCGACAAAGGGATCGAACGGTGGAGAAGAAGAGACGCAGAGAAAATGTTATTTTTACCTTTTTGTCGGGACACCTTTTTGATGCCGACATTTTCCGACAGAAATTCAAAAACGGTTCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCGTTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTACTCTTGGAATCTGAAAATTGACTTTTTTCAAGCAAGAACTTGACATAAGCAATCCGTTACCTCTCCACACACTTGATGCAATATGGCTGCAGAGTATTGGTTGGTTTTCCGGTCCTGGGATCCTTCGACGTGTAGGTGGAGATGAGAGGA</canonical>
            <polymorphic>AATTCAGAAATTTAGTTAGAGGGGCCAAGAAAAATTCTATTTTATTGAATTTTTGGCCAAAATTTGGGGATTTTTGAGTCAACAGTTTTCAAAAAAAAACTTACATTTTCAGAAAAATAAAAAAGAAAGAAATTCTGGATTGATACACACTCAACCTCAGAATAACTAGAAATATACATAGAATATCAGAAAAATAATTTTGAAGCAGAAAAAATCAGACATCCGCTTAGAATAAGAATAATGAATAATTGTGAGCTAGTCGAGGTCTTTTATACCATGAAAAGAGACGCAGAGAATAAATAAAAGGACAATGTTATTGGCGGCGACAGGGTGTCGGTACCCGACAAAGGGATCGAACGGTGGAGAAGAAGAGACGCAGAGAAAATGTTATTTTTACCTTTTTGTCGGGACACCTTTTTGATGCCGACATTTTCCGACAGAAATTCAAAAACGGTTCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCWCCAGCGCCCTCCAAATCGTTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTACTCTTGGAATCTGAAAATTGACTTTTTTCAAGCAAGAACTTGACATAAGCAATCCGTTACCTCTCCACACACTTGATGCAATATGGCTGCAGAGTATTGGTTGGTTTTCCGGTCCTGGGATCCTTCGACGTGTAGGTGGAGATGAGAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>147 104 80 78 76 64 61 60 57 55 50 36 29 23 20 12 11 7 6 6 6 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>147 104 80 78 76 64 61 60 57 55 50 36 29 29 20 12 11 7 6 6 2 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCCGACAGAAATTCAA</pcr_primer_p1>
		<pcr_primer_p2>TTGATACAAAATGTATTGGTCTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCCGACAGAAATTCAAAAACGGTTCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCGTTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCCGACAGAAATTCAAAAACGGTTCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCWCCAGCGCCCTCCAAATCGTTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28622</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>129345</contig_pos>
        <strand>+</strand>
        <context>CCTCCAAATC[A/C]WTGTGTGTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATC</left_flank>
        <right_flank>TTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGGGCCAAGAAAAATTCTATTTTATTGAATTTTTGGCCAAAATTTGGGGATTTTTGAGTCAACAGTTTTCAAAAAAAAACTTACATTTTCAGAAAAATAAAAAAGAAAGAAATTCTGGATTGATACACACTCAACCTCAGAATAACTAGAAATATACATAGAATATCAGAAAAATAATTTTGAAGCAGAAAAAATCAGACATCCGCTTAGAATAAGAATAATGAATAATTGTGAGCTAGTCGAGGTCTTTTATACCATGAAAAGAGACGCAGAGAATAAATAAAAGGACAATGTTATTGGCGGCGACAGGGTGTCGGTACCCGACAAAGGGATCGAACGGTGGAGAAGAAGAGACGCAGAGAAAATGTTATTTTTACCTTTTTGTCGGGACACCTTTTTGATGCCGACATTTTCCGACAGAAATTCAAAAACGGTTCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCGTTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTACTCTTGGAATCTGAAAATTGACTTTTTTCAAGCAAGAACTTGACATAAGCAATCCGTTACCTCTCCACACACTTGATGCAATATGGCTGCAGAGTATTGGTTGGTTTTCCGGTCCTGGGATCCTTCGACGTGTAGGTGGAGATGAGAGGAATGTAGTTGAGAAGATTG</canonical>
            <polymorphic>GAGGGGCCAAGAAAAATTCTATTTTATTGAATTTTTGGCCAAAATTTGGGGATTTTTGAGTCAACAGTTTTCAAAAAAAAACTTACATTTTCAGAAAAATAAAAAAGAAAGAAATTCTGGATTGATACACACTCAACCTCAGAATAACTAGAAATATACATAGAATATCAGAAAAATAATTTTGAAGCAGAAAAAATCAGACATCCGCTTAGAATAAGAATAATGAATAATTGTGAGCTAGTCGAGGTCTTTTATACCATGAAAAGAGACGCAGAGAATAAATAAAAGGACAATGTTATTGGCGGCGACAGGGTGTCGGTACCCGACAAAGGGATCGAACGGTGGAGAAGAAGAGACGCAGAGAAAATGTTATTTTTACCTTTTTGTCGGGACACCTTTTTGATGCCGACATTTTCCGACAGAAATTCAAAAACGGTTCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCMTTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTACTCTTGGAATCTGAAAATTGACTTTTTTCAAGCAAGAACTTGACATAAGCAATCCGTTACCTCTCCACACACTTGATGCAATATGGCTGCAGAGTATTGGTTGGTTTTCCGGTCCTGGGATCCTTCGACGTGTAGGTGGAGATGAGAGGAATGTAGTTGAGAAGATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAGCATATTTTCTCACATTTT</pcr_primer_p1>
		<pcr_primer_p2>TGGTTCATAAAAATAGTTATCCTGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCGTTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCA</canonical_amplicon>
		<polymorphic_amplicon>TCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCMTTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28623</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>129346</contig_pos>
        <strand>+</strand>
        <context>CTCCAAATCM[A/T]TGTGTGTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCG</left_flank>
        <right_flank>TGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGGGCCAAGAAAAATTCTATTTTATTGAATTTTTGGCCAAAATTTGGGGATTTTTGAGTCAACAGTTTTCAAAAAAAAACTTACATTTTCAGAAAAATAAAAAAGAAAGAAATTCTGGATTGATACACACTCAACCTCAGAATAACTAGAAATATACATAGAATATCAGAAAAATAATTTTGAAGCAGAAAAAATCAGACATCCGCTTAGAATAAGAATAATGAATAATTGTGAGCTAGTCGAGGTCTTTTATACCATGAAAAGAGACGCAGAGAATAAATAAAAGGACAATGTTATTGGCGGCGACAGGGTGTCGGTACCCGACAAAGGGATCGAACGGTGGAGAAGAAGAGACGCAGAGAAAATGTTATTTTTACCTTTTTGTCGGGACACCTTTTTGATGCCGACATTTTCCGACAGAAATTCAAAAACGGTTCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCGTTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTACTCTTGGAATCTGAAAATTGACTTTTTTCAAGCAAGAACTTGACATAAGCAATCCGTTACCTCTCCACACACTTGATGCAATATGGCTGCAGAGTATTGGTTGGTTTTCCGGTCCTGGGATCCTTCGACGTGTAGGTGGAGATGAGAGGAATGTAGTTGAGAAGATTGT</canonical>
            <polymorphic>AGGGGCCAAGAAAAATTCTATTTTATTGAATTTTTGGCCAAAATTTGGGGATTTTTGAGTCAACAGTTTTCAAAAAAAAACTTACATTTTCAGAAAAATAAAAAAGAAAGAAATTCTGGATTGATACACACTCAACCTCAGAATAACTAGAAATATACATAGAATATCAGAAAAATAATTTTGAAGCAGAAAAAATCAGACATCCGCTTAGAATAAGAATAATGAATAATTGTGAGCTAGTCGAGGTCTTTTATACCATGAAAAGAGACGCAGAGAATAAATAAAAGGACAATGTTATTGGCGGCGACAGGGTGTCGGTACCCGACAAAGGGATCGAACGGTGGAGAAGAAGAGACGCAGAGAAAATGTTATTTTTACCTTTTTGTCGGGACACCTTTTTGATGCCGACATTTTCCGACAGAAATTCAAAAACGGTTCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCGWTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTACTCTTGGAATCTGAAAATTGACTTTTTTCAAGCAAGAACTTGACATAAGCAATCCGTTACCTCTCCACACACTTGATGCAATATGGCTGCAGAGTATTGGTTGGTTTTCCGGTCCTGGGATCCTTCGACGTGTAGGTGGAGATGAGAGGAATGTAGTTGAGAAGATTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAGCATATTTTCTCACATTTT</pcr_primer_p1>
		<pcr_primer_p2>TGGTTCATAAAAATAGTTATCCTGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCGTTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCA</canonical_amplicon>
		<polymorphic_amplicon>TCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCGWTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28624</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>129374</contig_pos>
        <strand></strand>
        <context>TTTTGCCCTT[A/C]GTCTTCTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCACCAGCGCCCTCCAAATCGTTGTGTGTTTTATATTATTTTTGCCCTT</left_flank>
        <right_flank>GTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCT</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTTGGCCAAAATTTGGGGATTTTTGAGTCAACAGTTTTCAAAAAAAAACTTACATTTTCAGAAAAATAAAAAAGAAAGAAATTCTGGATTGATACACACTCAACCTCAGAATAACTAGAAATATACATAGAATATCAGAAAAATAATTTTGAAGCAGAAAAAATCAGACATCCGCTTAGAATAAGAATAATGAATAATTGTGAGCTAGTCGAGGTCTTTTATACCATGAAAAGAGACGCAGAGAATAAATAAAAGGACAATGTTATTGGCGGCGACAGGGTGTCGGTACCCGACAAAGGGATCGAACGGTGGAGAAGAAGAGACGCAGAGAAAATGTTATTTTTACCTTTTTGTCGGGACACCTTTTTGATGCCGACATTTTCCGACAGAAATTCAAAAACGGTTCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCGTTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTACTCTTGGAATCTGAAAATTGACTTTTTTCAAGCAAGAACTTGACATAAGCAATCCGTTACCTCTCCACACACTTGATGCAATATGGCTGCAGAGTATTGGTTGGTTTTCCGGTCCTGGGATCCTTCGACGTGTAGGTGGAGATGAGAGGAATGTAGTTGAGAAGATTGTCGGTGCACGAGCGACATCTCTCCGTTTC</canonical>
            <polymorphic>AATTTTTGGCCAAAATTTGGGGATTTTTGAGTCAACAGTTTTCAAAAAAAAACTTACATTTTCAGAAAAATAAAAAAGAAAGAAATTCTGGATTGATACACACTCAACCTCAGAATAACTAGAAATATACATAGAATATCAGAAAAATAATTTTGAAGCAGAAAAAATCAGACATCCGCTTAGAATAAGAATAATGAATAATTGTGAGCTAGTCGAGGTCTTTTATACCATGAAAAGAGACGCAGAGAATAAATAAAAGGACAATGTTATTGGCGGCGACAGGGTGTCGGTACCCGACAAAGGGATCGAACGGTGGAGAAGAAGAGACGCAGAGAAAATGTTATTTTTACCTTTTTGTCGGGACACCTTTTTGATGCCGACATTTTCCGACAGAAATTCAAAAACGGTTCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCGTTGTGTGTTTTATATTATTTTTGCCCTTMGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTACTCTTGGAATCTGAAAATTGACTTTTTTCAAGCAAGAACTTGACATAAGCAATCCGTTACCTCTCCACACACTTGATGCAATATGGCTGCAGAGTATTGGTTGGTTTTCCGGTCCTGGGATCCTTCGACGTGTAGGTGGAGATGAGAGGAATGTAGTTGAGAAGATTGTCGGTGCACGAGCGACATCTCTCCGTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>444 318 109 70 59</canonical_bands>
                <polymorphic_bands>444 377 109 70</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAGCATATTTTCTCACATTTT</pcr_primer_p1>
		<pcr_primer_p2>TGGTTCATAAAAATAGTTATCCTGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCGTTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCA</canonical_amplicon>
		<polymorphic_amplicon>TCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCGTTGTGTGTTTTATATTATTTTTGCCCTTMGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28625</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>129540</contig_pos>
        <strand>+</strand>
        <context>AACCACATAY[C/T]CTCAATTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATAC</left_flank>
        <right_flank>CTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAAGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAGACATCCGCTTAGAATAAGAATAATGAATAATTGTGAGCTAGTCGAGGTCTTTTATACCATGAAAAGAGACGCAGAGAATAAATAAAAGGACAATGTTATTGGCGGCGACAGGGTGTCGGTACCCGACAAAGGGATCGAACGGTGGAGAAGAAGAGACGCAGAGAAAATGTTATTTTTACCTTTTTGTCGGGACACCTTTTTGATGCCGACATTTTCCGACAGAAATTCAAAAACGGTTCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCGTTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTACTCTTGGAATCTGAAAATTGACTTTTTTCAAGCAAGAACTTGACATAAGCAATCCGTTACCTCTCCACACACTTGATGCAATATGGCTGCAGAGTATTGGTTGGTTTTCCGGTCCTGGGATCCTTCGACGTGTAGGTGGAGATGAGAGGAATGTAGTTGAGAAGATTGTCGGTGCACGAGCGACATCTCTCCGTTTCATAGATTCCTTTGTTGAGCTCGCTTGGCTCGAAGACCTTGATATTCTTCTTCGCGAAGAAATCATGCTCTCTTTGAATTTTCGAGAGGCTTCTGGAATTTTTAAACTTGATTTTTTCATTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTCGGGGCCAGA</canonical>
            <polymorphic>ATCAGACATCCGCTTAGAATAAGAATAATGAATAATTGTGAGCTAGTCGAGGTCTTTTATACCATGAAAAGAGACGCAGAGAATAAATAAAAGGACAATGTTATTGGCGGCGACAGGGTGTCGGTACCCGACAAAGGGATCGAACGGTGGAGAAGAAGAGACGCAGAGAAAATGTTATTTTTACCTTTTTGTCGGGACACCTTTTTGATGCCGACATTTTCCGACAGAAATTCAAAAACGGTTCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCGTTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACYCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTACTCTTGGAATCTGAAAATTGACTTTTTTCAAGCAAGAACTTGACATAAGCAATCCGTTACCTCTCCACACACTTGATGCAATATGGCTGCAGAGTATTGGTTGGTTTTCCGGTCCTGGGATCCTTCGACGTGTAGGTGGAGATGAGAGGAATGTAGTTGAGAAGATTGTCGGTGCACGAGCGACATCTCTCCGTTTCATAGATTCCTTTGTTGAGCTCGCTTGGCTCGAAGACCTTGATATTCTTCTTCGCGAAGAAATCATGCTCTCTTTGAATTTTCGAGAGGCTTCTGGAATTTTTAAACTTGATTTTTTCATTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTCGGGGCCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCCCTTAGATTTCTATTTCAGA</pcr_primer_p1>
		<pcr_primer_p2>TAGAAAAGGTGCAAAGTGTATTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTA</canonical_amplicon>
		<polymorphic_amplicon>ACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACYCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28626</snp_id>
        <super_contig>c003901043.Contig1</super_contig>
        <contig_pos>129556</contig_pos>
        <strand>+</strand>
        <context>TTTGTAATTM[A/C]TTTATTCAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTA</left_flank>
        <right_flank>TTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATAAGAATAATGAATAATTGTGAGCTAGTCGAGGTCTTTTATACCATGAAAAGAGACGCAGAGAATAAATAAAAGGACAATGTTATTGGCGGCGACAGGGTGTCGGTACCCGACAAAGGGATCGAACGGTGGAGAAGAAGAGACGCAGAGAAAATGTTATTTTTACCTTTTTGTCGGGACACCTTTTTGATGCCGACATTTTCCGACAGAAATTCAAAAACGGTTCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCGTTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTACTCTTGGAATCTGAAAATTGACTTTTTTCAAGCAAGAACTTGACATAAGCAATCCGTTACCTCTCCACACACTTGATGCAATATGGCTGCAGAGTATTGGTTGGTTTTCCGGTCCTGGGATCCTTCGACGTGTAGGTGGAGATGAGAGGAATGTAGTTGAGAAGATTGTCGGTGCACGAGCGACATCTCTCCGTTTCATAGATTCCTTTGTTGAGCTCGCTTGGCTCGAAGACCTTGATATTCTTCTTCGCGAAGAAATCATGCTCTCTTTGAATTTTCGAGAGGCTTCTGGAATTTTTAAACTTGATTTTTTCATTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTCGGGGCCAGAGTATGCATTCTACCGT</canonical>
            <polymorphic>GAATAAGAATAATGAATAATTGTGAGCTAGTCGAGGTCTTTTATACCATGAAAAGAGACGCAGAGAATAAATAAAAGGACAATGTTATTGGCGGCGACAGGGTGTCGGTACCCGACAAAGGGATCGAACGGTGGAGAAGAAGAGACGCAGAGAAAATGTTATTTTTACCTTTTTGTCGGGACACCTTTTTGATGCCGACATTTTCCGACAGAAATTCAAAAACGGTTCAAGCATATTTTCTCACATTTTATATAATATTTGCACACATTCACCAGCGCCCTCCAAATCGTTGTGTGTTTTATATTATTTTTGCCCTTAGTCTTCTTCTCCTTTAGTATGGGTTTATTCAGGTGGCCGGAAAAAAACCTAACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTAMTTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTACTCTTGGAATCTGAAAATTGACTTTTTTCAAGCAAGAACTTGACATAAGCAATCCGTTACCTCTCCACACACTTGATGCAATATGGCTGCAGAGTATTGGTTGGTTTTCCGGTCCTGGGATCCTTCGACGTGTAGGTGGAGATGAGAGGAATGTAGTTGAGAAGATTGTCGGTGCACGAGCGACATCTCTCCGTTTCATAGATTCCTTTGTTGAGCTCGCTTGGCTCGAAGACCTTGATATTCTTCTTCGCGAAGAAATCATGCTCTCTTTGAATTTTCGAGAGGCTTCTGGAATTTTTAAACTTGATTTTTTCATTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTCGGGGCCAGAGTATGCATTCTACCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>497 422 63 18</canonical_bands>
                <polymorphic_bands>919 63 18</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>257 195 179 138 87 54 42 20 17 7 4</canonical_bands>
                <polymorphic_bands>257 195 179 142 87 54 42 20 17 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCCCTTAGATTTCTATTTCAGA</pcr_primer_p1>
		<pcr_primer_p2>TAGAAAAGGTGCAAAGTGTATTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTAATTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTA</canonical_amplicon>
		<polymorphic_amplicon>ACCCCTTAGATTTCTATTTCAGAATTTCAGAGTTTCATAATCCCATCACATCCACCAGACCAATACATTTTGTATCAATTTTTTACAGGATAACTATTTTTATGAACCACATACTCTCAATTTGTAATTAMTTTATTCAGAAGTCAAAAATGATCGAAGGAAGACGCAATGATAAAAGATTGAAGTGAAAGTATCAAAGTACTTGACCAGGTCCTCCATTGTGTGTCGGGAATACACTTTGCACCTTTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28627</snp_id>
        <super_contig>c004001137.Contig2</super_contig>
        <contig_pos>45952</contig_pos>
        <strand>+</strand>
        <context>TGCTCCGTCT[C/T]GTTTCGATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACCCGGGTTTGGAGGACCTGCCGGATCGTTTTAGTTTTTTGCTCCGTCT</left_flank>
        <right_flank>GTTTCGATTTCTCCCATTATTATTTTCTAATATTCTGGTGTAAATTTTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAACTATAAATTTTTTGAATCAGCAGTCCTAATCTGAATGAAATTGTTCTTGAAGTTTTCGAGACTAGATATGTTCAAAAGTCCCAACGAACTAAACATATTCATGAAAACAAATCGAAATAGTCCAAATTTTCCTAACGTGATTTCGAAAAGAGATCAAGAAACAGATGGACGTGGCCGGAGATATTTCAAATCAGAAAAATAGATTTTGGCATAGTGGTTATTGTCGCGAATTCAGGTGTCTGAAGAACACCTCTTCACGACTTTTACCCTTTTCTGAATGAATTCTCTTCTTTTTCCCTTCAGTTTACATATTTTATTCACCAATACCGACGCCGCCCAACAACGATGCTATTTGAATTGCCGCCGACGGACTACTGTACCTGCTGATCTAACTCGGTCTCGCCGCGCACCAAGGAAACGCGCCTGATTTTGGGATTATTGGAGCACCCGGGTTTGGAGGACCTGCCGGATCGTTTTAGTTTTTTGCTCCGTCTTGTTTCGATTTCTCCCATTATTATTTTCTAATATTCTGGTGTAAATTTTCTTGTCGGCAGAATGAATCCGGCAACGGATTCTTTCAGGTGTATCGTTGTAGGCATTTATAAGTAATAAATCGGTGTCTTAAATTCTGTGTTTTGTTGTCTTTTTCTCTCTTTAGGTTATCGTGTCTCAAGGGGCCGTACTAATGCTATATGCCTGCAAAATAGTTATCGAACTTCTGAAACAGTTTCTTTTCTGAAAATGAGCAGGAGAGACTAGCAAAATTATCAGGTCATAAGAATTAGAATAAAAGTATAATAAAACAGTACCAGGAAACGCACAACGAAAATATCGAGGTTCTCATCTAGAGTTCTTGAAACGGATTTTTTTCTAGACTTCAAAAAACAGAGCATGAAAAAATCAAAGCATATTAGAGTTGTTTTGACCAACATTGAGATTTTCCAGAGGCTCCAAAATAGTTCAAAACCAGACGTTCCCAAACCGAGGCTTTACAA</canonical>
            <polymorphic>TGAAACTATAAATTTTTTGAATCAGCAGTCCTAATCTGAATGAAATTGTTCTTGAAGTTTTCGAGACTAGATATGTTCAAAAGTCCCAACGAACTAAACATATTCATGAAAACAAATCGAAATAGTCCAAATTTTCCTAACGTGATTTCGAAAAGAGATCAAGAAACAGATGGACGTGGCCGGAGATATTTCAAATCAGAAAAATAGATTTTGGCATAGTGGTTATTGTCGCGAATTCAGGTGTCTGAAGAACACCTCTTCACGACTTTTACCCTTTTCTGAATGAATTCTCTTCTTTTTCCCTTCAGTTTACATATTTTATTCACCAATACCGACGCCGCCCAACAACGATGCTATTTGAATTGCCGCCGACGGACTACTGTACCTGCTGATCTAACTCGGTCTCGCCGCGCACCAAGGAAACGCGCCTGATTTTGGGATTATTGGAGCACCCGGGTTTGGAGGACCTGCCGGATCGTTTTAGTTTTTTGCTCCGTCTYGTTTCGATTTCTCCCATTATTATTTTCTAATATTCTGGTGTAAATTTTCTTGTCGGCAGAATGAATCCGGCAACGGATTCTTTCAGGTGTATCGTTGTAGGCATTTATAAGTAATAAATCGGTGTCTTAAATTCTGTGTTTTGTTGTCTTTTTCTCTCTTTAGGTTATCGTGTCTCAAGGGGCCGTACTAATGCTATATGCCTGCAAAATAGTTATCGAACTTCTGAAACAGTTTCTTTTCTGAAAATGAGCAGGAGAGACTAGCAAAATTATCAGGTCATAAGAATTAGAATAAAAGTATAATAAAACAGTACCAGGAAACGCACAACGAAAATATCGAGGTTCTCATCTAGAGTTCTTGAAACGGATTTTTTTCTAGACTTCAAAAAACAGAGCATGAAAAAATCAAAGCATATTAGAGTTGTTTTGACCAACATTGAGATTTTCCAGAGGCTCCAAAATAGTTCAAAACCAGACGTTCCCAAACCGAGGCTTTACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGACTACTGTACCTGCTGATCTA</pcr_primer_p1>
		<pcr_primer_p2>TTATAAATGCCTACAACGATACA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GGACTACTGTACCTGCTGATCTAACTCGGTCTCGCCGCGCACCAAGGAAACGCGCCTGATTTTGGGATTATTGGAGCACCCGGGTTTGGAGGACCTGCCGGATCGTTTTAGTTTTTTGCTCCGTCTTGTTTCGATTTCTCCCATTATTATTTTCTAATATTCTGGTGTAAATTTTCTTGTCGGCAGAATGAATCCGGCAACGGATTCTTTCAGGTGTATCGTTGTAGGCATTTATAA</canonical_amplicon>
		<polymorphic_amplicon>GGACTACTGTACCTGCTGATCTAACTCGGTCTCGCCGCGCACCAAGGAAACGCGCCTGATTTTGGGATTATTGGAGCACCCGGGTTTGGAGGACCTGCCGGATCGTTTTAGTTTTTTGCTCCGTCTYGTTTCGATTTCTCCCATTATTATTTTCTAATATTCTGGTGTAAATTTTCTTGTCGGCAGAATGAATCCGGCAACGGATTCTTTCAGGTGTATCGTTGTAGGCATTTATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28628</snp_id>
        <super_contig>c004001137.Contig2</super_contig>
        <contig_pos>46144</contig_pos>
        <strand>+</strand>
        <context>GCCGTACTAA[G/T]GCTATATGCC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTTGTCTTTTTCTCTCTTTAGGTTATCGTGTCTCAAGGGGCCGTACTAA</left_flank>
        <right_flank>GCTATATGCCTGCAAAATAGTTATCGAACTTCTGAAACAGTTTCTTTTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCAGAAAAATAGATTTTGGCATAGTGGTTATTGTCGCGAATTCAGGTGTCTGAAGAACACCTCTTCACGACTTTTACCCTTTTCTGAATGAATTCTCTTCTTTTTCCCTTCAGTTTACATATTTTATTCACCAATACCGACGCCGCCCAACAACGATGCTATTTGAATTGCCGCCGACGGACTACTGTACCTGCTGATCTAACTCGGTCTCGCCGCGCACCAAGGAAACGCGCCTGATTTTGGGATTATTGGAGCACCCGGGTTTGGAGGACCTGCCGGATCGTTTTAGTTTTTTGCTCCGTCTTGTTTCGATTTCTCCCATTATTATTTTCTAATATTCTGGTGTAAATTTTCTTGTCGGCAGAATGAATCCGGCAACGGATTCTTTCAGGTGTATCGTTGTAGGCATTTATAAGTAATAAATCGGTGTCTTAAATTCTGTGTTTTGTTGTCTTTTTCTCTCTTTAGGTTATCGTGTCTCAAGGGGCCGTACTAATGCTATATGCCTGCAAAATAGTTATCGAACTTCTGAAACAGTTTCTTTTCTGAAAATGAGCAGGAGAGACTAGCAAAATTATCAGGTCATAAGAATTAGAATAAAAGTATAATAAAACAGTACCAGGAAACGCACAACGAAAATATCGAGGTTCTCATCTAGAGTTCTTGAAACGGATTTTTTTCTAGACTTCAAAAAACAGAGCATGAAAAAATCAAAGCATATTAGAGTTGTTTTGACCAACATTGAGATTTTCCAGAGGCTCCAAAATAGTTCAAAACCAGACGTTCCCAAACCGAGGCTTTACAAAACCAGGCCTTTTGCAGCCATGATAATTCGGTACCATTTTTGACTTCGAAAATAGTTTCAGGGTTCTCAAATATTCTTCTAATGATTGAATGCAGCCTTTTGTGTTTTGATTGTGTTTTGAATTCCAGACTGAATTCGCTCCAAAAATGCATATAAACACCCTGAAGCCATTTTTGCCTCAAAATAGGGGCT</canonical>
            <polymorphic>AAATCAGAAAAATAGATTTTGGCATAGTGGTTATTGTCGCGAATTCAGGTGTCTGAAGAACACCTCTTCACGACTTTTACCCTTTTCTGAATGAATTCTCTTCTTTTTCCCTTCAGTTTACATATTTTATTCACCAATACCGACGCCGCCCAACAACGATGCTATTTGAATTGCCGCCGACGGACTACTGTACCTGCTGATCTAACTCGGTCTCGCCGCGCACCAAGGAAACGCGCCTGATTTTGGGATTATTGGAGCACCCGGGTTTGGAGGACCTGCCGGATCGTTTTAGTTTTTTGCTCCGTCTTGTTTCGATTTCTCCCATTATTATTTTCTAATATTCTGGTGTAAATTTTCTTGTCGGCAGAATGAATCCGGCAACGGATTCTTTCAGGTGTATCGTTGTAGGCATTTATAAGTAATAAATCGGTGTCTTAAATTCTGTGTTTTGTTGTCTTTTTCTCTCTTTAGGTTATCGTGTCTCAAGGGGCCGTACTAAKGCTATATGCCTGCAAAATAGTTATCGAACTTCTGAAACAGTTTCTTTTCTGAAAATGAGCAGGAGAGACTAGCAAAATTATCAGGTCATAAGAATTAGAATAAAAGTATAATAAAACAGTACCAGGAAACGCACAACGAAAATATCGAGGTTCTCATCTAGAGTTCTTGAAACGGATTTTTTTCTAGACTTCAAAAAACAGAGCATGAAAAAATCAAAGCATATTAGAGTTGTTTTGACCAACATTGAGATTTTCCAGAGGCTCCAAAATAGTTCAAAACCAGACGTTCCCAAACCGAGGCTTTACAAAACCAGGCCTTTTGCAGCCATGATAATTCGGTACCATTTTTGACTTCGAAAATAGTTTCAGGGTTCTCAAATATTCTTCTAATGATTGAATGCAGCCTTTTGTGTTTTGATTGTGTTTTGAATTCCAGACTGAATTCGCTCCAAAAATGCATATAAACACCCTGAAGCCATTTTTGCCTCAAAATAGGGGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTTCAGGTGTATCGTTGTA</pcr_primer_p1>
		<pcr_primer_p2>CGTTTCCTGGTACTGTTTTATTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTTCAGGTGTATCGTTGTAGGCATTTATAAGTAATAAATCGGTGTCTTAAATTCTGTGTTTTGTTGTCTTTTTCTCTCTTTAGGTTATCGTGTCTCAAGGGGCCGTACTAATGCTATATGCCTGCAAAATAGTTATCGAACTTCTGAAACAGTTTCTTTTCTGAAAATGAGCAGGAGAGACTAGCAAAATTATCAGGTCATAAGAATTAGAATAAAAGTATAATAAAACAGTACCAGGAAACG</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTTCAGGTGTATCGTTGTAGGCATTTATAAGTAATAAATCGGTGTCTTAAATTCTGTGTTTTGTTGTCTTTTTCTCTCTTTAGGTTATCGTGTCTCAAGGGGCCGTACTAAKGCTATATGCCTGCAAAATAGTTATCGAACTTCTGAAACAGTTTCTTTTCTGAAAATGAGCAGGAGAGACTAGCAAAATTATCAGGTCATAAGAATTAGAATAAAAGTATAATAAAACAGTACCAGGAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28629</snp_id>
        <super_contig>c004001145.Contig3</super_contig>
        <contig_pos>4060</contig_pos>
        <strand>+</strand>
        <context>GCGGCTAGTA[A/G]AAAACGACGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACGGAAAAGAAGGATGAAAAAGAGCAAGCGGAAGAGGCGGCGGCTAGTA</left_flank>
        <right_flank>AAAACGACGCGTCATTTTGGTCCGCCGCTTTTGGTGGTGGTAGGGAGATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTAATTTGATTTAATTGAAATTTGACGACGAGAAATCTAACGTTTTGGCGGCGTTTTGTATTTCAGAAGGCGTGACGATGCTTTTTTTTGTAAAAAGCAATCATAAACACAGTACGTTTTATGAAATGAAGTAGATGAAGAAGTCAATCTTGTTTCCTAAAGCTTTTTGTACGATCCAGATTAGTGTGTTGGCGTCGTAATTGAAGCCCTTGGACGCCCCGGATGCTTTTCCATTTCGTAGTTTTCAACCACTTCCGTTTCTCTTCCTTTCATAACTTTTGTATACCGATTATAAATAATCTTGTGCTGCTCTTTTCCTTTTTGCTTCATTTCTTCTTCACTTCACCGCGTCGTCTTCTTCATCTCCTCTCCTGGGTTTTCCGTCTCTAGGTAATTCCCCATTGAGTTGACGACGAGAAGAAGAATCAGAAGAAGACGACTGGGACGACGGAAAAGAAGGATGAAAAAGAGCAAGCGGAAGAGGCGGCGGCTAGTAGAAAACGACGCGTCATTTTGGTCCGCCGCTTTTGGTGGTGGTAGGGAGATGGTGTAGATGATGGTGCCAGCGGTTGTGGGGTGAAGCAGGAGGCGTTACCCTGAAGACGGGTGGAGGTGGAGTCTGCAGAGAAAAAGAGCGTGAAATTCAGAGAAAGCAATAGAGAAGAGAGAGAGAGAGGGATCGCGCGCGGAGGGTCTAGAGAGAAGGCGCACAAGAGTGTTTGGGGCGAGAGACCTTCTTCTGGTTGCTGCTACTGCTGCTGTGCCTCTCTTTCCTCGTTTCCACTATTGCCAGAGAGCCTTCTCAGTGGACCCGCCCCTCCTTACTTGTCCCATCACCCCTTTTTCGGCTCGGCTCGATTTCGGGTATCAATATCCCTTATCTCATTACTGCCAGCTCTCTTTTCTAGGGGCCAATTCTATGATATTCAGCTGATCCATGAGGTTACGAGAGACGATGGGCTTGGGAGGCCCACCTACCATCTTCCTCTTGCTAGGA</canonical>
            <polymorphic>TTTTTAATTTGATTTAATTGAAATTTGACGACGAGAAATCTAACGTTTTGGCGGCGTTTTGTATTTCAGAAGGCGTGACGATGCTTTTTTTTGTAAAAAGCAATCATAAACACAGTACGTTTTATGAAATGAAGTAGATGAAGAAGTCAATCTTGTTTCCTAAAGCTTTTTGTACGATCCAGATTAGTGTGTTGGCGTCGTAATTGAAGCCCTTGGACGCCCCGGATGCTTTTCCATTTCGTAGTTTTCAACCACTTCCGTTTCTCTTCCTTTCATAACTTTTGTATACCGATTATAAATAATCTTGTGCTGCTCTTTTCCTTTTTGCTTCATTTCTTCTTCACTTCACCGCGTCGTCTTCTTCATCTCCTCTCCTGGGTTTTCCGTCTCTAGGTAATTCCCCATTGAGTTGACGACGAGAAGAAGAATCAGAAGAAGACGACTGGGACGACGGAAAAGAAGGATGAAAAAGAGCAAGCGGAAGAGGCGGCGGCTAGTARAAAACGACGCGTCATTTTGGTCCGCCGCTTTTGGTGGTGGTAGGGAGATGGTGTAGATGATGGTGCCAGCGGTTGTGGGGTGAAGCAGGAGGCGTTACCCTGAAGACGGGTGGAGGTGGAGTCTGCAGAGAAAAAGAGCGTGAAATTCAGAGAAAGCAATAGAGAAGAGAGAGAGAGAGGGATCGCGCGCGGAGGGTCTAGAGAGAAGGCGCACAAGAGTGTTTGGGGCGAGAGACCTTCTTCTGGTTGCTGCTACTGCTGCTGTGCCTCTCTTTCCTCGTTTCCACTATTGCCAGAGAGCCTTCTCAGTGGACCCGCCCCTCCTTACTTGTCCCATCACCCCTTTTTCGGCTCGGCTCGATTTCGGGTATCAATATCCCTTATCTCATTACTGCCAGCTCTCTTTTCTAGGGGCCAATTCTATGATATTCAGCTGATCCATGAGGTTACGAGAGACGATGGGCTTGGGAGGCCCACCTACCATCTTCCTCTTGCTAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCATTTCTTCTTCACTTCACC</pcr_primer_p1>
		<pcr_primer_p2>CACCATCATCTACACCATCTC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>TTCATTTCTTCTTCACTTCACCGCGTCGTCTTCTTCATCTCCTCTCCTGGGTTTTCCGTCTCTAGGTAATTCCCCATTGAGTTGACGACGAGAAGAAGAATCAGAAGAAGACGACTGGGACGACGGAAAAGAAGGATGAAAAAGAGCAAGCGGAAGAGGCGGCGGCTAGTAGAAAACGACGCGTCATTTTGGTCCGCCGCTTTTGGTGGTGGTAGGGAGATGGTGTAGATGATGGTG</canonical_amplicon>
		<polymorphic_amplicon>TTCATTTCTTCTTCACTTCACCGCGTCGTCTTCTTCATCTCCTCTCCTGGGTTTTCCGTCTCTAGGTAATTCCCCATTGAGTTGACGACGAGAAGAAGAATCAGAAGAAGACGACTGGGACGACGGAAAAGAAGGATGAAAAAGAGCAAGCGGAAGAGGCGGCGGCTAGTARAAAACGACGCGTCATTTTGGTCCGCCGCTTTTGGTGGTGGTAGGGAGATGGTGTAGATGATGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28630</snp_id>
        <super_contig>c004001145.Contig3</super_contig>
        <contig_pos>4227</contig_pos>
        <strand></strand>
        <context>caatagagaa[G/T]agagagagag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGGAGTCTGCAGAGAAAAAGAGCGTGAAATTCAGAGAAAGCAATAGAGAA</left_flank>
        <right_flank>AGAGAGAGAGAGGGATCGCGCGCGGAGGGTCTAGAGAGAAGGCGCACAAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGTACGATCCAGATTAGTGTGTTGGCGTCGTAATTGAAGCCCTTGGACGCCCCGGATGCTTTTCCATTTCGTAGTTTTCAACCACTTCCGTTTCTCTTCCTTTCATAACTTTTGTATACCGATTATAAATAATCTTGTGCTGCTCTTTTCCTTTTTGCTTCATTTCTTCTTCACTTCACCGCGTCGTCTTCTTCATCTCCTCTCCTGGGTTTTCCGTCTCTAGGTAATTCCCCATTGAGTTGACGACGAGAAGAAGAATCAGAAGAAGACGACTGGGACGACGGAAAAGAAGGATGAAAAAGAGCAAGCGGAAGAGGCGGCGGCTAGTAGAAAACGACGCGTCATTTTGGTCCGCCGCTTTTGGTGGTGGTAGGGAGATGGTGTAGATGATGGTGCCAGCGGTTGTGGGGTGAAGCAGGAGGCGTTACCCTGAAGACGGGTGGAGGTGGAGTCTGCAGAGAAAAAGAGCGTGAAATTCAGAGAAAGCAATAGAGAAGAGAGAGAGAGAGGGATCGCGCGCGGAGGGTCTAGAGAGAAGGCGCACAAGAGTGTTTGGGGCGAGAGACCTTCTTCTGGTTGCTGCTACTGCTGCTGTGCCTCTCTTTCCTCGTTTCCACTATTGCCAGAGAGCCTTCTCAGTGGACCCGCCCCTCCTTACTTGTCCCATCACCCCTTTTTCGGCTCGGCTCGATTTCGGGTATCAATATCCCTTATCTCATTACTGCCAGCTCTCTTTTCTAGGGGCCAATTCTATGATATTCAGCTGATCCATGAGGTTACGAGAGACGATGGGCTTGGGAGGCCCACCTACCATCTTCCTCTTGCTAGGATGTCTACTGTTTCTTGTGGTACGTTTTTTGAATTTTTTCACTTTTTCAGGGAACTTTGTTCTTTCACTATGTAAATGAAACTGATTTGAAGTCTGATCGCTACTACACATGCACTGCCGAGAACATCGAGTTGAAGGATTACAAGTTCGGAAATCAGTTCAGCCTGC</canonical>
            <polymorphic>TTTTGTACGATCCAGATTAGTGTGTTGGCGTCGTAATTGAAGCCCTTGGACGCCCCGGATGCTTTTCCATTTCGTAGTTTTCAACCACTTCCGTTTCTCTTCCTTTCATAACTTTTGTATACCGATTATAAATAATCTTGTGCTGCTCTTTTCCTTTTTGCTTCATTTCTTCTTCACTTCACCGCGTCGTCTTCTTCATCTCCTCTCCTGGGTTTTCCGTCTCTAGGTAATTCCCCATTGAGTTGACGACGAGAAGAAGAATCAGAAGAAGACGACTGGGACGACGGAAAAGAAGGATGAAAAAGAGCAAGCGGAAGAGGCGGCGGCTAGTAGAAAACGACGCGTCATTTTGGTCCGCCGCTTTTGGTGGTGGTAGGGAGATGGTGTAGATGATGGTGCCAGCGGTTGTGGGGTGAAGCAGGAGGCGTTACCCTGAAGACGGGTGGAGGTGGAGTCTGCAGAGAAAAAGAGCGTGAAATTCAGAGAAAGCAATAGAGAAKAGAGAGAGAGAGGGATCGCGCGCGGAGGGTCTAGAGAGAAGGCGCACAAGAGTGTTTGGGGCGAGAGACCTTCTTCTGGTTGCTGCTACTGCTGCTGTGCCTCTCTTTCCTCGTTTCCACTATTGCCAGAGAGCCTTCTCAGTGGACCCGCCCCTCCTTACTTGTCCCATCACCCCTTTTTCGGCTCGGCTCGATTTCGGGTATCAATATCCCTTATCTCATTACTGCCAGCTCTCTTTTCTAGGGGCCAATTCTATGATATTCAGCTGATCCATGAGGTTACGAGAGACGATGGGCTTGGGAGGCCCACCTACCATCTTCCTCTTGCTAGGATGTCTACTGTTTCTTGTGGTACGTTTTTTGAATTTTTTCACTTTTTCAGGGAACTTTGTTCTTTCACTATGTAAATGAAACTGATTTGAAGTCTGATCGCTACTACACATGCACTGCCGAGAACATCGAGTTGAAGGATTACAAGTTCGGAAATCAGTTCAGCCTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGGGAGATGGTGTAGATGAT</pcr_primer_p1>
		<pcr_primer_p2>ATAGTGGAAACGAGGAAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTAGGGAGATGGTGTAGATGATGGTGCCAGCGGTTGTGGGGTGAAGCAGGAGGCGTTACCCTGAAGACGGGTGGAGGTGGAGTCTGCAGAGAAAAAGAGCGTGAAATTCAGAGAAAGCAATAGAGAAGAGAGAGAGAGAGGGATCGCGCGCGGAGGGTCTAGAGAGAAGGCGCACAAGAGTGTTTGGGGCGAGAGACCTTCTTCTGGTTGCTGCTACTGCTGCTGTGCCTCTCTTTCCTCGTTTCCACTAT</canonical_amplicon>
		<polymorphic_amplicon>GTAGGGAGATGGTGTAGATGATGGTGCCAGCGGTTGTGGGGTGAAGCAGGAGGCGTTACCCTGAAGACGGGTGGAGGTGGAGTCTGCAGAGAAAAAGAGCGTGAAATTCAGAGAAAGCAATAGAGAAKAGAGAGAGAGAGGGATCGCGCGCGGAGGGTCTAGAGAGAAGGCGCACAAGAGTGTTTGGGGCGAGAGACCTTCTTCTGGTTGCTGCTACTGCTGCTGTGCCTCTCTTTCCTCGTTTCCACTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28631</snp_id>
        <super_contig>c004001145.Contig3</super_contig>
        <contig_pos>4410</contig_pos>
        <strand>+</strand>
        <context>CCCCTTTTTC[C/T]GCTCGGCTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCTTCTCAGTGGACCCGCCCCTCCTTACTTGTCCCATCACCCCTTTTTC</left_flank>
        <right_flank>GCTCGGCTCGATTTCGGGTATCAATATCCCTTATCTCATTACTGCCAGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGTCGTCTTCTTCATCTCCTCTCCTGGGTTTTCCGTCTCTAGGTAATTCCCCATTGAGTTGACGACGAGAAGAAGAATCAGAAGAAGACGACTGGGACGACGGAAAAGAAGGATGAAAAAGAGCAAGCGGAAGAGGCGGCGGCTAGTAGAAAACGACGCGTCATTTTGGTCCGCCGCTTTTGGTGGTGGTAGGGAGATGGTGTAGATGATGGTGCCAGCGGTTGTGGGGTGAAGCAGGAGGCGTTACCCTGAAGACGGGTGGAGGTGGAGTCTGCAGAGAAAAAGAGCGTGAAATTCAGAGAAAGCAATAGAGAAGAGAGAGAGAGAGGGATCGCGCGCGGAGGGTCTAGAGAGAAGGCGCACAAGAGTGTTTGGGGCGAGAGACCTTCTTCTGGTTGCTGCTACTGCTGCTGTGCCTCTCTTTCCTCGTTTCCACTATTGCCAGAGAGCCTTCTCAGTGGACCCGCCCCTCCTTACTTGTCCCATCACCCCTTTTTCGGCTCGGCTCGATTTCGGGTATCAATATCCCTTATCTCATTACTGCCAGCTCTCTTTTCTAGGGGCCAATTCTATGATATTCAGCTGATCCATGAGGTTACGAGAGACGATGGGCTTGGGAGGCCCACCTACCATCTTCCTCTTGCTAGGATGTCTACTGTTTCTTGTGGTACGTTTTTTGAATTTTTTCACTTTTTCAGGGAACTTTGTTCTTTCACTATGTAAATGAAACTGATTTGAAGTCTGATCGCTACTACACATGCACTGCCGAGAACATCGAGTTGAAGGATTACAAGTTCGGAAATCAGTTCAGCCTGCAGATCACCAACTATAAACGGAGAAGTTGTGAGTTTTTTATCCTTCAAATAATCCCCAAAAAGTTATAAAAACTACTCAAAATTTCCCGATGGAATTTCGGCAAATTATAAATTTTCTTTCGTTGCAAAAATTGAATCAGATCAATCAAAAAAAAATTGCTTGGGCGCCATTGTGTTGTATGTT</canonical>
            <polymorphic>GCGTCGTCTTCTTCATCTCCTCTCCTGGGTTTTCCGTCTCTAGGTAATTCCCCATTGAGTTGACGACGAGAAGAAGAATCAGAAGAAGACGACTGGGACGACGGAAAAGAAGGATGAAAAAGAGCAAGCGGAAGAGGCGGCGGCTAGTAGAAAACGACGCGTCATTTTGGTCCGCCGCTTTTGGTGGTGGTAGGGAGATGGTGTAGATGATGGTGCCAGCGGTTGTGGGGTGAAGCAGGAGGCGTTACCCTGAAGACGGGTGGAGGTGGAGTCTGCAGAGAAAAAGAGCGTGAAATTCAGAGAAAGCAATAGAGAAGAGAGAGAGAGAGGGATCGCGCGCGGAGGGTCTAGAGAGAAGGCGCACAAGAGTGTTTGGGGCGAGAGACCTTCTTCTGGTTGCTGCTACTGCTGCTGTGCCTCTCTTTCCTCGTTTCCACTATTGCCAGAGAGCCTTCTCAGTGGACCCGCCCCTCCTTACTTGTCCCATCACCCCTTTTTCYGCTCGGCTCGATTTCGGGTATCAATATCCCTTATCTCATTACTGCCAGCTCTCTTTTCTAGGGGCCAATTCTATGATATTCAGCTGATCCATGAGGTTACGAGAGACGATGGGCTTGGGAGGCCCACCTACCATCTTCCTCTTGCTAGGATGTCTACTGTTTCTTGTGGTACGTTTTTTGAATTTTTTCACTTTTTCAGGGAACTTTGTTCTTTCACTATGTAAATGAAACTGATTTGAAGTCTGATCGCTACTACACATGCACTGCCGAGAACATCGAGTTGAAGGATTACAAGTTCGGAAATCAGTTCAGCCTGCAGATCACCAACTATAAACGGAGAAGTTGTGAGTTTTTTATCCTTCAAATAATCCCCAAAAAGTTATAAAAACTACTCAAAATTTCCCGATGGAATTTCGGCAAATTATAAATTTTCTTTCGTTGCAAAAATTGAATCAGATCAATCAAAAAAAAATTGCTTGGGCGCCATTGTGTTGTATGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>503 215 137 105 25 15</canonical_bands>
                <polymorphic_bands>608 215 137 25 15</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>307 190 188 143 51 42 30 19 16 9 5</canonical_bands>
                <polymorphic_bands>307 190 188 143 56 42 30 19 16 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTTTCCTCGTTTCCACTAT</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAACAGTAGACATCCTAGC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTCTTTCCTCGTTTCCACTATTGCCAGAGAGCCTTCTCAGTGGACCCGCCCCTCCTTACTTGTCCCATCACCCCTTTTTCGGCTCGGCTCGATTTCGGGTATCAATATCCCTTATCTCATTACTGCCAGCTCTCTTTTCTAGGGGCCAATTCTATGATATTCAGCTGATCCATGAGGTTACGAGAGACGATGGGCTTGGGAGGCCCACCTACCATCTTCCTCTTGCTAGGATGTCTACTGTTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>CTCTTTCCTCGTTTCCACTATTGCCAGAGAGCCTTCTCAGTGGACCCGCCCCTCCTTACTTGTCCCATCACCCCTTTTTCYGCTCGGCTCGATTTCGGGTATCAATATCCCTTATCTCATTACTGCCAGCTCTCTTTTCTAGGGGCCAATTCTATGATATTCAGCTGATCCATGAGGTTACGAGAGACGATGGGCTTGGGAGGCCCACCTACCATCTTCCTCTTGCTAGGATGTCTACTGTTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28632</snp_id>
        <super_contig>c004001145.Contig3</super_contig>
        <contig_pos>4504</contig_pos>
        <strand>+</strand>
        <context>CTGATCCATG[A/G]GRTTACGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCAGCTCTCTTTTCTAGGGGCCAATTCTATGATATTCAGCTGATCCATG</left_flank>
        <right_flank>GGTTACGAGAGACGATGGGCTTGGGAGGCCCACCTACCATCTTCCTCTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGACGACGGAAAAGAAGGATGAAAAAGAGCAAGCGGAAGAGGCGGCGGCTAGTAGAAAACGACGCGTCATTTTGGTCCGCCGCTTTTGGTGGTGGTAGGGAGATGGTGTAGATGATGGTGCCAGCGGTTGTGGGGTGAAGCAGGAGGCGTTACCCTGAAGACGGGTGGAGGTGGAGTCTGCAGAGAAAAAGAGCGTGAAATTCAGAGAAAGCAATAGAGAAGAGAGAGAGAGAGGGATCGCGCGCGGAGGGTCTAGAGAGAAGGCGCACAAGAGTGTTTGGGGCGAGAGACCTTCTTCTGGTTGCTGCTACTGCTGCTGTGCCTCTCTTTCCTCGTTTCCACTATTGCCAGAGAGCCTTCTCAGTGGACCCGCCCCTCCTTACTTGTCCCATCACCCCTTTTTCGGCTCGGCTCGATTTCGGGTATCAATATCCCTTATCTCATTACTGCCAGCTCTCTTTTCTAGGGGCCAATTCTATGATATTCAGCTGATCCATGAGGTTACGAGAGACGATGGGCTTGGGAGGCCCACCTACCATCTTCCTCTTGCTAGGATGTCTACTGTTTCTTGTGGTACGTTTTTTGAATTTTTTCACTTTTTCAGGGAACTTTGTTCTTTCACTATGTAAATGAAACTGATTTGAAGTCTGATCGCTACTACACATGCACTGCCGAGAACATCGAGTTGAAGGATTACAAGTTCGGAAATCAGTTCAGCCTGCAGATCACCAACTATAAACGGAGAAGTTGTGAGTTTTTTATCCTTCAAATAATCCCCAAAAAGTTATAAAAACTACTCAAAATTTCCCGATGGAATTTCGGCAAATTATAAATTTTCTTTCGTTGCAAAAATTGAATCAGATCAATCAAAAAAAAATTGCTTGGGCGCCATTGTGTTGTATGTTTGCCAACAAAAAGTACACATACAAATCCCGTGTGTACTTTCACTTTTTCCACTTCCAAATGACTCAAAAATTCTGGAAAAATATTTGAAAAATC</canonical>
            <polymorphic>GGGACGACGGAAAAGAAGGATGAAAAAGAGCAAGCGGAAGAGGCGGCGGCTAGTAGAAAACGACGCGTCATTTTGGTCCGCCGCTTTTGGTGGTGGTAGGGAGATGGTGTAGATGATGGTGCCAGCGGTTGTGGGGTGAAGCAGGAGGCGTTACCCTGAAGACGGGTGGAGGTGGAGTCTGCAGAGAAAAAGAGCGTGAAATTCAGAGAAAGCAATAGAGAAGAGAGAGAGAGAGGGATCGCGCGCGGAGGGTCTAGAGAGAAGGCGCACAAGAGTGTTTGGGGCGAGAGACCTTCTTCTGGTTGCTGCTACTGCTGCTGTGCCTCTCTTTCCTCGTTTCCACTATTGCCAGAGAGCCTTCTCAGTGGACCCGCCCCTCCTTACTTGTCCCATCACCCCTTTTTCGGCTCGGCTCGATTTCGGGTATCAATATCCCTTATCTCATTACTGCCAGCTCTCTTTTCTAGGGGCCAATTCTATGATATTCAGCTGATCCATGRGGTTACGAGAGACGATGGGCTTGGGAGGCCCACCTACCATCTTCCTCTTGCTAGGATGTCTACTGTTTCTTGTGGTACGTTTTTTGAATTTTTTCACTTTTTCAGGGAACTTTGTTCTTTCACTATGTAAATGAAACTGATTTGAAGTCTGATCGCTACTACACATGCACTGCCGAGAACATCGAGTTGAAGGATTACAAGTTCGGAAATCAGTTCAGCCTGCAGATCACCAACTATAAACGGAGAAGTTGTGAGTTTTTTATCCTTCAAATAATCCCCAAAAAGTTATAAAAACTACTCAAAATTTCCCGATGGAATTTCGGCAAATTATAAATTTTCTTTCGTTGCAAAAATTGAATCAGATCAATCAAAAAAAAATTGCTTGGGCGCCATTGTGTTGTATGTTTGCCAACAAAAAGTACACATACAAATCCCGTGTGTACTTTCACTTTTTCCACTTCCAAATGACTCAAAAATTCTGGAAAAATATTTGAAAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGTATCAATATCCCTTATCTCA</pcr_primer_p1>
		<pcr_primer_p2>ATGTGTAGTAGCGATCAGACTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GGGTATCAATATCCCTTATCTCATTACTGCCAGCTCTCTTTTCTAGGGGCCAATTCTATGATATTCAGCTGATCCATGAGGTTACGAGAGACGATGGGCTTGGGAGGCCCACCTACCATCTTCCTCTTGCTAGGATGTCTACTGTTTCTTGTGGTACGTTTTTTGAATTTTTTCACTTTTTCAGGGAACTTTGTTCTTTCACTATGTAAATGAAACTGATTTGAAGTCTGATCGCTACTACACAT</canonical_amplicon>
		<polymorphic_amplicon>GGGTATCAATATCCCTTATCTCATTACTGCCAGCTCTCTTTTCTAGGGGCCAATTCTATGATATTCAGCTGATCCATGRGGTTACGAGAGACGATGGGCTTGGGAGGCCCACCTACCATCTTCCTCTTGCTAGGATGTCTACTGTTTCTTGTGGTACGTTTTTTGAATTTTTTCACTTTTTCAGGGAACTTTGTTCTTTCACTATGTAAATGAAACTGATTTGAAGTCTGATCGCTACTACACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28633</snp_id>
        <super_contig>c004001145.Contig3</super_contig>
        <contig_pos>4506</contig_pos>
        <strand>+</strand>
        <context>GATCCATGRG[A/G]TTACGAGAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGCTCTCTTTTCTAGGGGCCAATTCTATGATATTCAGCTGATCCATGAG</left_flank>
        <right_flank>TTACGAGAGACGATGGGCTTGGGAGGCCCACCTACCATCTTCCTCTTGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACGACGGAAAAGAAGGATGAAAAAGAGCAAGCGGAAGAGGCGGCGGCTAGTAGAAAACGACGCGTCATTTTGGTCCGCCGCTTTTGGTGGTGGTAGGGAGATGGTGTAGATGATGGTGCCAGCGGTTGTGGGGTGAAGCAGGAGGCGTTACCCTGAAGACGGGTGGAGGTGGAGTCTGCAGAGAAAAAGAGCGTGAAATTCAGAGAAAGCAATAGAGAAGAGAGAGAGAGAGGGATCGCGCGCGGAGGGTCTAGAGAGAAGGCGCACAAGAGTGTTTGGGGCGAGAGACCTTCTTCTGGTTGCTGCTACTGCTGCTGTGCCTCTCTTTCCTCGTTTCCACTATTGCCAGAGAGCCTTCTCAGTGGACCCGCCCCTCCTTACTTGTCCCATCACCCCTTTTTCGGCTCGGCTCGATTTCGGGTATCAATATCCCTTATCTCATTACTGCCAGCTCTCTTTTCTAGGGGCCAATTCTATGATATTCAGCTGATCCATGAGGTTACGAGAGACGATGGGCTTGGGAGGCCCACCTACCATCTTCCTCTTGCTAGGATGTCTACTGTTTCTTGTGGTACGTTTTTTGAATTTTTTCACTTTTTCAGGGAACTTTGTTCTTTCACTATGTAAATGAAACTGATTTGAAGTCTGATCGCTACTACACATGCACTGCCGAGAACATCGAGTTGAAGGATTACAAGTTCGGAAATCAGTTCAGCCTGCAGATCACCAACTATAAACGGAGAAGTTGTGAGTTTTTTATCCTTCAAATAATCCCCAAAAAGTTATAAAAACTACTCAAAATTTCCCGATGGAATTTCGGCAAATTATAAATTTTCTTTCGTTGCAAAAATTGAATCAGATCAATCAAAAAAAAATTGCTTGGGCGCCATTGTGTTGTATGTTTGCCAACAAAAAGTACACATACAAATCCCGTGTGTACTTTCACTTTTTCCACTTCCAAATGACTCAAAAATTCTGGAAAAATATTTGAAAAATCCT</canonical>
            <polymorphic>GACGACGGAAAAGAAGGATGAAAAAGAGCAAGCGGAAGAGGCGGCGGCTAGTAGAAAACGACGCGTCATTTTGGTCCGCCGCTTTTGGTGGTGGTAGGGAGATGGTGTAGATGATGGTGCCAGCGGTTGTGGGGTGAAGCAGGAGGCGTTACCCTGAAGACGGGTGGAGGTGGAGTCTGCAGAGAAAAAGAGCGTGAAATTCAGAGAAAGCAATAGAGAAGAGAGAGAGAGAGGGATCGCGCGCGGAGGGTCTAGAGAGAAGGCGCACAAGAGTGTTTGGGGCGAGAGACCTTCTTCTGGTTGCTGCTACTGCTGCTGTGCCTCTCTTTCCTCGTTTCCACTATTGCCAGAGAGCCTTCTCAGTGGACCCGCCCCTCCTTACTTGTCCCATCACCCCTTTTTCGGCTCGGCTCGATTTCGGGTATCAATATCCCTTATCTCATTACTGCCAGCTCTCTTTTCTAGGGGCCAATTCTATGATATTCAGCTGATCCATGAGRTTACGAGAGACGATGGGCTTGGGAGGCCCACCTACCATCTTCCTCTTGCTAGGATGTCTACTGTTTCTTGTGGTACGTTTTTTGAATTTTTTCACTTTTTCAGGGAACTTTGTTCTTTCACTATGTAAATGAAACTGATTTGAAGTCTGATCGCTACTACACATGCACTGCCGAGAACATCGAGTTGAAGGATTACAAGTTCGGAAATCAGTTCAGCCTGCAGATCACCAACTATAAACGGAGAAGTTGTGAGTTTTTTATCCTTCAAATAATCCCCAAAAAGTTATAAAAACTACTCAAAATTTCCCGATGGAATTTCGGCAAATTATAAATTTTCTTTCGTTGCAAAAATTGAATCAGATCAATCAAAAAAAAATTGCTTGGGCGCCATTGTGTTGTATGTTTGCCAACAAAAAGTACACATACAAATCCCGTGTGTACTTTCACTTTTTCCACTTCCAAATGACTCAAAAATTCTGGAAAAATATTTGAAAAATCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 352 147</canonical_bands>
                <polymorphic_bands>853 147</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGTATCAATATCCCTTATCTCA</pcr_primer_p1>
		<pcr_primer_p2>ATGTGTAGTAGCGATCAGACTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GGGTATCAATATCCCTTATCTCATTACTGCCAGCTCTCTTTTCTAGGGGCCAATTCTATGATATTCAGCTGATCCATGAGGTTACGAGAGACGATGGGCTTGGGAGGCCCACCTACCATCTTCCTCTTGCTAGGATGTCTACTGTTTCTTGTGGTACGTTTTTTGAATTTTTTCACTTTTTCAGGGAACTTTGTTCTTTCACTATGTAAATGAAACTGATTTGAAGTCTGATCGCTACTACACAT</canonical_amplicon>
		<polymorphic_amplicon>GGGTATCAATATCCCTTATCTCATTACTGCCAGCTCTCTTTTCTAGGGGCCAATTCTATGATATTCAGCTGATCCATGAGRTTACGAGAGACGATGGGCTTGGGAGGCCCACCTACCATCTTCCTCTTGCTAGGATGTCTACTGTTTCTTGTGGTACGTTTTTTGAATTTTTTCACTTTTTCAGGGAACTTTGTTCTTTCACTATGTAAATGAAACTGATTTGAAGTCTGATCGCTACTACACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28635</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>91927</contig_pos>
        <strand>+</strand>
        <context>TGCACTGAAA[G/T]AAATATATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGCGGCGGATGGCTTCGGCGAGGATCATGGAGATATCGATGCACTGAAA</left_flank>
        <right_flank>AAATATATAAATAAAAAGTATACATGAGTAATCGTCTCACCTGGATCTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACCTCGCACATGTTTGTGGTGTTTTTTATGTGTCACATTTTGTAGTACACCCGATTTGATTCACTGTGAACATAGAAAAGATCTTTTCTTGGCTCCTTTCAAATATCATGACCAATTTTTCATTGTCAAAAACATTGATTAAATGAGGGGATGGAGAAAAGAGCAGATTTAAATGGTGACAGCGAAAGGAAAAGTATGCCAGTCGTATGAAAGGGGGGAGAGGAACAAAAAGAAATGGGACAATTCATTACTGAAATCATCCGCATGAAAAGAAGACGTAAAGGTTGAAATACTTTGATTTGTGGGTAGTTGAAAGGGAAATGATAGTTCTGAACCAATAAGGTGCGGGATATTGATGTTACTATAACCCGGGGTAAGCAAGTGTTTCATCCGATTTAGCATATCGGAACATGTGAGAAGAGATACGACACAGACTCTCCGTTGTGTGTGCGGCGGATGGCTTCGGCGAGGATCATGGAGATATCGATGCACTGAAAGAAATATATAAATAAAAAGTATACATGAGTAATCGTCTCACCTGGATCTTTGGACACTTCTTCATGTTCTCATCTTGTGGGATAGTGTTCGTTACCACAACAGCCTCGAACTTGGAAGCGTTGAGACGAGTGAGAGCCGGTCCAGAAAAAATTCCATGAACGCAGAAGGCGTAAACCTTCTCTGCTCCCGCTTCCACCAATCTGAAAACGGTCTCACTAGTATTAGAGTTAACTCTTTCTCCATACTTGTCAGCTGCCATGCAAATGGTTCCACACGTGTCTGCCATATCGTCGACTAGAATTGCCACCTTTCCTTCGACCGATCCAACCAAAGTCATCTTTTCGACTTCGTTCGCGCGCTTGCGCTCCTTGTGAATCAGAGCGAAGTCGACGTTGAGGCGATCAGCAATCGAGGTGACTCTGAAAAAATGCTGAAGAATTCAAACCAATTGAAATCCGGACTCACCTTTTGGCACCTCCGGCGTCTGGAGAAACGATAAC</canonical>
            <polymorphic>AAACCTCGCACATGTTTGTGGTGTTTTTTATGTGTCACATTTTGTAGTACACCCGATTTGATTCACTGTGAACATAGAAAAGATCTTTTCTTGGCTCCTTTCAAATATCATGACCAATTTTTCATTGTCAAAAACATTGATTAAATGAGGGGATGGAGAAAAGAGCAGATTTAAATGGTGACAGCGAAAGGAAAAGTATGCCAGTCGTATGAAAGGGGGGAGAGGAACAAAAAGAAATGGGACAATTCATTACTGAAATCATCCGCATGAAAAGAAGACGTAAAGGTTGAAATACTTTGATTTGTGGGTAGTTGAAAGGGAAATGATAGTTCTGAACCAATAAGGTGCGGGATATTGATGTTACTATAACCCGGGGTAAGCAAGTGTTTCATCCGATTTAGCATATCGGAACATGTGAGAAGAGATACGACACAGACTCTCCGTTGTGTGTGCGGCGGATGGCTTCGGCGAGGATCATGGAGATATCGATGCACTGAAAKAAATATATAAATAAAAAGTATACATGAGTAATCGTCTCACCTGGATCTTTGGACACTTCTTCATGTTCTCATCTTGTGGGATAGTGTTCGTTACCACAACAGCCTCGAACTTGGAAGCGTTGAGACGAGTGAGAGCCGGTCCAGAAAAAATTCCATGAACGCAGAAGGCGTAAACCTTCTCTGCTCCCGCTTCCACCAATCTGAAAACGGTCTCACTAGTATTAGAGTTAACTCTTTCTCCATACTTGTCAGCTGCCATGCAAATGGTTCCACACGTGTCTGCCATATCGTCGACTAGAATTGCCACCTTTCCTTCGACCGATCCAACCAAAGTCATCTTTTCGACTTCGTTCGCGCGCTTGCGCTCCTTGTGAATCAGAGCGAAGTCGACGTTGAGGCGATCAGCAATCGAGGTGACTCTGAAAAAATGCTGAAGAATTCAAACCAATTGAAATCCGGACTCACCTTTTGGCACCTCCGGCGTCTGGAGAAACGATAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATAGTTCTGAACCAATAAGGTG</pcr_primer_p1>
		<pcr_primer_p2>AGATGAGAACATGAAGAAGTGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATAGTTCTGAACCAATAAGGTGCGGGATATTGATGTTACTATAACCCGGGGTAAGCAAGTGTTTCATCCGATTTAGCATATCGGAACATGTGAGAAGAGATACGACACAGACTCTCCGTTGTGTGTGCGGCGGATGGCTTCGGCGAGGATCATGGAGATATCGATGCACTGAAAGAAATATATAAATAAAAAGTATACATGAGTAATCGTCTCACCTGGATCTTTGGACACTTCTTCATGTTCTCATCT</canonical_amplicon>
		<polymorphic_amplicon>GATAGTTCTGAACCAATAAGGTGCGGGATATTGATGTTACTATAACCCGGGGTAAGCAAGTGTTTCATCCGATTTAGCATATCGGAACATGTGAGAAGAGATACGACACAGACTCTCCGTTGTGTGTGCGGCGGATGGCTTCGGCGAGGATCATGGAGATATCGATGCACTGAAAKAAATATATAAATAAAAAGTATACATGAGTAATCGTCTCACCTGGATCTTTGGACACTTCTTCATGTTCTCATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28636</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>171373</contig_pos>
        <strand></strand>
        <context>TCACCCTCTT[T/C]CTCGTTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCCTAAACACCCCTTTTTGCAGAAATTCTGCTCATATTCATCACCCTCTT</left_flank>
        <right_flank>CTCGTTTTTTTCCAAAGAATTGTAAATCTGAAAAAAAAGAAACCTCGCCT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAATCGAATCAAGGTCCCTCGCGACGACTAGTGGAATGGATTATAATCACTTTAATGACCTGTAAATAGTTTATTTTACCAACTAACTTTTTATGATATTTAAAGTCAGCATGTGAATAAAGGAATGGATAAAGTACAAATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAATCACTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATTGAGGTCAAAGTGTACGTCTAGAGTACTGCCAACCCTATGTCCCCGCTTCTTCATTTTATACCGTACTTGTTCATCTGAAAACCCTAAACACCCCTTTTTGCAGAAATTCTGCTCATATTCATCACCCTCTTTCTCGTTTTTTTCCAAAGAATTGTAAATCTGAAAAAAAAGAAACCTCGCCTATTGCTCCCTTCATCCCTTCAAACATATCTATATCCCGCCAGAAATGAATGTGTGCGTGTGAATATAACCCTCCGTCGTTTCTCAATATATTTTTCCTCTAAAGAGTAGAAGCAAGAAGCTTATCACCTGCACACTGAGAAATCCAAGGCAAATCCTTCTTATTGCTTTTTTCTCGCTTTCGGGATCTCGCGCAAAAGAGGAATGAAATTGAAAAGGCAATCTAGGTTATCGTCGTGCGAGAGCCGCCAAGATGAGGTTTCACACTTTGCATTCTCAATTAGGCGTTTCTGGAGTCATGAGTGTTGGTGCTGTAGATCAATTTGTCATTTTTGGCTGCGAGAAACGACAGCGAAAAAGAGATGAGATTTTGATGGAGTGTCGTATAGTGGCGAAAATAGCAGGGTTTCAGGATTGCGATATGGGATGGAACGAGAGATAATAAATGGTTT</canonical>
            <polymorphic>TCAATCGAATCAAGGTCCCTCGCGACGACTAGTGGAATGGATTATAATCACTTTAATGACCTGTAAATAGTTTATTTTACCAACTAACTTTTTATGATATTTAAAGTCAGCATGTGAATAAAGGAATGGATAAAGTACAAATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAATCACTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATTGAGGTCAAAGTGTACGTCTAGAGTACTGCCAACCCTATGTCCCCGCTTCTTCATTTTATACCGTACTTGTTCATCTGAAAACCCTAAACACCCCTTTTTGCAGAAATTCTGCTCATATTCATCACCCTCTTYCTCGTTTTTTTCCAAAGAATTGTAAATCTGAAAAAAAAGAAACCTCGCCTATTGCTCCCTTCATCCCTTCAAACATATCTATATCCCGCCAGAAATGAATGTGTGCGTGTGAATATAACCCTCCGTCGTTTCTCAATATATTTTTCCTCTAAAGAGTAGAAGCAAGAAGCTTATCACCTGCACACTGAGAAATCCAAGGCAAATCCTTCTTATTGCTTTTTTCTCGCTTTCGGGATCTCGCGCAAAAGAGGAATGAAATTGAAAAGGCAATCTAGGTTATCGTCGTGCGAGAGCCGCCAAGATGAGGTTTCACACTTTGCATTCTCAATTAGGCGTTTCTGGAGTCATGAGTGTTGGTGCTGTAGATCAATTTGTCATTTTTGGCTGCGAGAAACGACAGCGAAAAAGAGATGAGATTTTGATGGAGTGTCGTATAGTGGCGAAAATAGCAGGGTTTCAGGATTGCGATATGGGATGGAACGAGAGATAATAAATGGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTATACCGTACTTGTTCATCTG</pcr_primer_p1>
		<pcr_primer_p2>AAGCTTCTTGCTTCTACTCTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTTATACCGTACTTGTTCATCTGAAAACCCTAAACACCCCTTTTTGCAGAAATTCTGCTCATATTCATCACCCTCTTTCTCGTTTTTTTCCAAAGAATTGTAAATCTGAAAAAAAAGAAACCTCGCCTATTGCTCCCTTCATCCCTTCAAACATATCTATATCCCGCCAGAAATGAATGTGTGCGTGTGAATATAACCCTCCGTCGTTTCTCAATATATTTTTCCTCTAAAGAGTAGAAGCAAGAAGCTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTATACCGTACTTGTTCATCTGAAAACCCTAAACACCCCTTTTTGCAGAAATTCTGCTCATATTCATCACCCTCTTYCTCGTTTTTTTCCAAAGAATTGTAAATCTGAAAAAAAAGAAACCTCGCCTATTGCTCCCTTCATCCCTTCAAACATATCTATATCCCGCCAGAAATGAATGTGTGCGTGTGAATATAACCCTCCGTCGTTTCTCAATATATTTTTCCTCTAAAGAGTAGAAGCAAGAAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28637</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>177333</contig_pos>
        <strand></strand>
        <context>TTAGTGTCTt[T/C]cttctccatc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCCAACTATGTCTCCTATTTTTTCCCGAAGCATAATCGGATTAGTGTCTT</left_flank>
        <right_flank>CTTCTCCATCTTCTTCTTCTTCTTTCTCCCTTCCAAAAATGCCCCCAACG</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAGTAGATTTCCAGAAACCTCCAGAACATTTTCAACACCTCAATGTCAACTCACCGTGTTTGCTTTGTTAGAAGCTCACCTTATGATGACACTTTGAGCTCAATTATCTCGGTTTCTTCAAAAGATATCAAGCAGCATTCAACTAATAAACTGTTTATCATAAAATGAGAAATAATCAGTTGACAAGTTTTTGATATCTTTCACAGGATTCAAGATAACTGAGCTCAAAGTGAACTTAACCGGAGGGCTTCTTTCAGAGCAAATATGGTAAAATTTCAAAAATCCAAACTCCTGTAGTACGGTACTTCCTAATAACTCAACTCTTTCTAACCCCTGACTCATTCCCAAAGCGGCTTAGTAGTTTCTAAAAGTTGTATATGAAAACATAGAACATTCAGAGACACATATATATTCATAATAATATTTTGTTTTGATATCCTTTTGCCTGCCAACTATGTCTCCTATTTTTTCCCGAAGCATAATCGGATTAGTGTCTTTCTTCTCCATCTTCTTCTTCTTCTTTCTCCCTTCCAAAAATGCCCCCAACGCGTGTATCACATTATCATTCGGCGTTGCGTGCCAGCGTTGCGGTCGATTGGCGTCGTCGACACCACCACCTGCAATCGACTTTTAATTTTTCCTTGTCCCCGGAGAAAAAGAGCCACGGCTTCTTCTTTTTCTCTTAAGAAATCCTTCTATATGCACACCTTCTCCATCCCTCTTATCACCTATGTCCCCTTCTCGTTCTGGAGTCATATCCGGAGAGCTTGAGAGGGGGATGGCGGAGCAACACACACACCCAGAGCCAAACGACTTTTTTGTCCGAGTCGTCGGCTCCGCCCGTCCTCCCCTAGGTGTCTCACACTCTTCGAAATCCATACTCTATCAGTCAGAGAGACCTCTTTTCACATTTAATTATTTTCTAAAGGGTATAGCCATCTATGGAAAGCGAGAGGAGCGACGACGGGGAAAAAAGAGGGATAGATGAGTCTTCTGAA</canonical>
            <polymorphic>CAGAGTAGATTTCCAGAAACCTCCAGAACATTTTCAACACCTCAATGTCAACTCACCGTGTTTGCTTTGTTAGAAGCTCACCTTATGATGACACTTTGAGCTCAATTATCTCGGTTTCTTCAAAAGATATCAAGCAGCATTCAACTAATAAACTGTTTATCATAAAATGAGAAATAATCAGTTGACAAGTTTTTGATATCTTTCACAGGATTCAAGATAACTGAGCTCAAAGTGAACTTAACCGGAGGGCTTCTTTCAGAGCAAATATGGTAAAATTTCAAAAATCCAAACTCCTGTAGTACGGTACTTCCTAATAACTCAACTCTTTCTAACCCCTGACTCATTCCCAAAGCGGCTTAGTAGTTTCTAAAAGTTGTATATGAAAACATAGAACATTCAGAGACACATATATATTCATAATAATATTTTGTTTTGATATCCTTTTGCCTGCCAACTATGTCTCCTATTTTTTCCCGAAGCATAATCGGATTAGTGTCTTYCTTCTCCATCTTCTTCTTCTTCTTTCTCCCTTCCAAAAATGCCCCCAACGCGTGTATCACATTATCATTCGGCGTTGCGTGCCAGCGTTGCGGTCGATTGGCGTCGTCGACACCACCACCTGCAATCGACTTTTAATTTTTCCTTGTCCCCGGAGAAAAAGAGCCACGGCTTCTTCTTTTTCTCTTAAGAAATCCTTCTATATGCACACCTTCTCCATCCCTCTTATCACCTATGTCCCCTTCTCGTTCTGGAGTCATATCCGGAGAGCTTGAGAGGGGGATGGCGGAGCAACACACACACCCAGAGCCAAACGACTTTTTTGTCCGAGTCGTCGGCTCCGCCCGTCCTCCCCTAGGTGTCTCACACTCTTCGAAATCCATACTCTATCAGTCAGAGAGACCTCTTTTCACATTTAATTATTTTCTAAAGGGTATAGCCATCTATGGAAAGCGAGAGGAGCGACGACGGGGAAAAAAGAGGGATAGATGAGTCTTCTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGCCAACTATGTCTCCTATTT</pcr_primer_p1>
		<pcr_primer_p2>GAAGGATTTCTTAAGAGAAAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTGCCAACTATGTCTCCTATTTTTTCCCGAAGCATAATCGGATTAGTGTCTTTCTTCTCCATCTTCTTCTTCTTCTTTCTCCCTTCCAAAAATGCCCCCAACGCGTGTATCACATTATCATTCGGCGTTGCGTGCCAGCGTTGCGGTCGATTGGCGTCGTCGACACCACCACCTGCAATCGACTTTTAATTTTTCCTTGTCCCCGGAGAAAAAGAGCCACGGCTTCTTCTTTTTCTCTTAAGAAATCCTTC</canonical_amplicon>
		<polymorphic_amplicon>CTGCCAACTATGTCTCCTATTTTTTCCCGAAGCATAATCGGATTAGTGTCTTYCTTCTCCATCTTCTTCTTCTTCTTTCTCCCTTCCAAAAATGCCCCCAACGCGTGTATCACATTATCATTCGGCGTTGCGTGCCAGCGTTGCGGTCGATTGGCGTCGTCGACACCACCACCTGCAATCGACTTTTAATTTTTCCTTGTCCCCGGAGAAAAAGAGCCACGGCTTCTTCTTTTTCTCTTAAGAAATCCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28638</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>189167</contig_pos>
        <strand>+</strand>
        <context>agctcGAGAT[G/T]CACGTAAAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GACAGATTTTTGATATCTCTGAAGGGCACCGAGATAATTGAGCTCGAGAT</left_flank>
        <right_flank>CACGTAAAGGGCGGGCCTTTAATATAGCAAGTACGGTAATTGATATTGGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGCTGGAATTCTTTTTAACGCTTTTTGTGTTCTGCATGCACTCTATGTATCCCCCTTCTTCTTCTGGAAAGAGAGTTTCTTTGGTTCTTAAAATTAGACATTAAATTAGAACTTTAAGAATTTTAGGATTTTGATAAAGAACAAGTTAAGATAAGGAGAAAAATGAGTGTGGAATTCTTGATAATCTAGAAAAGTCGTTTTTCAAATTTCAAACAGACTAAGTAACTTTTATTTTAAAATTACATGGTAACATTTTTATCAAAACTGTAAAACTCAGAAAATTAGGATTTCCGGACATCTCTTGAAAAACCAAGTTACCGTTACATCTCTTATAGATGCCATCCTATACTGAACTTTGGAGCTCAATTATCTCGATTCCTGTGGAAGATACTGAAAATTTACAACTTATAAATTAGTTATCATAGTATTTCTAATATTTTATCAGTTGACAGATTTTTGATATCTCTGAAGGGCACCGAGATAATTGAGCTCGAGATGCACGTAAAGGGCGGGCCTTTAATATAGCAAGTACGGTAATTGATATTGGGGAATACAAACCGGAAATTTTCACAAAAAGTCCTCTTTCCAACCCCTATTTTTCCCCTTATTTCTATCTCTAATTTCGGTAAAAGTTAGTGTTCTAAAAATCCCAAAAATACCTATACTAGCAATCTCTCTTACACCCCCTTTACACCTACTGTAGTAGTTATCGCCTTATAATTAATTATTGAATTGGCTTTTAAGCACATCACCACCCTGTTTTTTCTTTTTTTTCGGGCGGTGCCTACTCTTTACTCTTTATTTTTATTTTTTGATTGGTGATAATGTGGTTGCCAGTGGAACATTTTTCCCCCCTAATTCAGTTATAGTGACGGTTTTGAAGTTTATTTTGATTTTTCCAGGTGGCGTTCCATCGGCTAGAAAGGAGGTCATCCGTCACAAGATTCGTGCAATTGGAAAGATGGCTAGAGCTTTCTCAGTTCTCAGGTAATTGAAAG</canonical>
            <polymorphic>TTGGCTGGAATTCTTTTTAACGCTTTTTGTGTTCTGCATGCACTCTATGTATCCCCCTTCTTCTTCTGGAAAGAGAGTTTCTTTGGTTCTTAAAATTAGACATTAAATTAGAACTTTAAGAATTTTAGGATTTTGATAAAGAACAAGTTAAGATAAGGAGAAAAATGAGTGTGGAATTCTTGATAATCTAGAAAAGTCGTTTTTCAAATTTCAAACAGACTAAGTAACTTTTATTTTAAAATTACATGGTAACATTTTTATCAAAACTGTAAAACTCAGAAAATTAGGATTTCCGGACATCTCTTGAAAAACCAAGTTACCGTTACATCTCTTATAGATGCCATCCTATACTGAACTTTGGAGCTCAATTATCTCGATTCCTGTGGAAGATACTGAAAATTTACAACTTATAAATTAGTTATCATAGTATTTCTAATATTTTATCAGTTGACAGATTTTTGATATCTCTGAAGGGCACCGAGATAATTGAGCTCGAGATKCACGTAAAGGGCGGGCCTTTAATATAGCAAGTACGGTAATTGATATTGGGGAATACAAACCGGAAATTTTCACAAAAAGTCCTCTTTCCAACCCCTATTTTTCCCCTTATTTCTATCTCTAATTTCGGTAAAAGTTAGTGTTCTAAAAATCCCAAAAATACCTATACTAGCAATCTCTCTTACACCCCCTTTACACCTACTGTAGTAGTTATCGCCTTATAATTAATTATTGAATTGGCTTTTAAGCACATCACCACCCTGTTTTTTCTTTTTTTTCGGGCGGTGCCTACTCTTTACTCTTTATTTTTATTTTTTGATTGGTGATAATGTGGTTGCCAGTGGAACATTTTTCCCCCCTAATTCAGTTATAGTGACGGTTTTGAAGTTTATTTTGATTTTTCCAGGTGGCGTTCCATCGGCTAGAAAGGAGGTCATCCGTCACAAGATTCGTGCAATTGGAAAGATGGCTAGAGCTTTCTCAGTTCTCAGGTAATTGAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>460 452 48 36 4</canonical_bands>
                <polymorphic_bands>912 48 36 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATCTCTTGAAAAACCAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTATTCCCCAATATCAATTAC</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>ACATCTCTTGAAAAACCAAGTTACCGTTACATCTCTTATAGATGCCATCCTATACTGAACTTTGGAGCTCAATTATCTCGATTCCTGTGGAAGATACTGAAAATTTACAACTTATAAATTAGTTATCATAGTATTTCTAATATTTTATCAGTTGACAGATTTTTGATATCTCTGAAGGGCACCGAGATAATTGAGCTCGAGATGCACGTAAAGGGCGGGCCTTTAATATAGCAAGTACGGTAATTGATATTGGGGAATACAA</canonical_amplicon>
		<polymorphic_amplicon>ACATCTCTTGAAAAACCAAGTTACCGTTACATCTCTTATAGATGCCATCCTATACTGAACTTTGGAGCTCAATTATCTCGATTCCTGTGGAAGATACTGAAAATTTACAACTTATAAATTAGTTATCATAGTATTTCTAATATTTTATCAGTTGACAGATTTTTGATATCTCTGAAGGGCACCGAGATAATTGAGCTCGAGATKCACGTAAAGGGCGGGCCTTTAATATAGCAAGTACGGTAATTGATATTGGGGAATACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28639</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>189270</contig_pos>
        <strand>+</strand>
        <context>CCCTATTTTT[C/T]CCCTTATTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATACAAACCGGAAATTTTCACAAAAAGTCCTCTTTCCAACCCCTATTTTT</left_flank>
        <right_flank>CCCTTATTTCTATCTCTAATTTCGGTAAAAGTTAGTGTTCTAAAAATCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATTAGAACTTTAAGAATTTTAGGATTTTGATAAAGAACAAGTTAAGATAAGGAGAAAAATGAGTGTGGAATTCTTGATAATCTAGAAAAGTCGTTTTTCAAATTTCAAACAGACTAAGTAACTTTTATTTTAAAATTACATGGTAACATTTTTATCAAAACTGTAAAACTCAGAAAATTAGGATTTCCGGACATCTCTTGAAAAACCAAGTTACCGTTACATCTCTTATAGATGCCATCCTATACTGAACTTTGGAGCTCAATTATCTCGATTCCTGTGGAAGATACTGAAAATTTACAACTTATAAATTAGTTATCATAGTATTTCTAATATTTTATCAGTTGACAGATTTTTGATATCTCTGAAGGGCACCGAGATAATTGAGCTCGAGATGCACGTAAAGGGCGGGCCTTTAATATAGCAAGTACGGTAATTGATATTGGGGAATACAAACCGGAAATTTTCACAAAAAGTCCTCTTTCCAACCCCTATTTTTCCCCTTATTTCTATCTCTAATTTCGGTAAAAGTTAGTGTTCTAAAAATCCCAAAAATACCTATACTAGCAATCTCTCTTACACCCCCTTTACACCTACTGTAGTAGTTATCGCCTTATAATTAATTATTGAATTGGCTTTTAAGCACATCACCACCCTGTTTTTTCTTTTTTTTCGGGCGGTGCCTACTCTTTACTCTTTATTTTTATTTTTTGATTGGTGATAATGTGGTTGCCAGTGGAACATTTTTCCCCCCTAATTCAGTTATAGTGACGGTTTTGAAGTTTATTTTGATTTTTCCAGGTGGCGTTCCATCGGCTAGAAAGGAGGTCATCCGTCACAAGATTCGTGCAATTGGAAAGATGGCTAGAGCTTTCTCAGTTCTCAGGTAATTGAAAGTTTATAGAGATTCTAGAGGCTTCCATTCGGTCCGCCGTCGGCCCAGTGACGGTCAGCTGACGGTCCGCTAACGGACGGCTCGGTTCGCGGTCCGTCGGCCGAC</canonical>
            <polymorphic>TAAATTAGAACTTTAAGAATTTTAGGATTTTGATAAAGAACAAGTTAAGATAAGGAGAAAAATGAGTGTGGAATTCTTGATAATCTAGAAAAGTCGTTTTTCAAATTTCAAACAGACTAAGTAACTTTTATTTTAAAATTACATGGTAACATTTTTATCAAAACTGTAAAACTCAGAAAATTAGGATTTCCGGACATCTCTTGAAAAACCAAGTTACCGTTACATCTCTTATAGATGCCATCCTATACTGAACTTTGGAGCTCAATTATCTCGATTCCTGTGGAAGATACTGAAAATTTACAACTTATAAATTAGTTATCATAGTATTTCTAATATTTTATCAGTTGACAGATTTTTGATATCTCTGAAGGGCACCGAGATAATTGAGCTCGAGATGCACGTAAAGGGCGGGCCTTTAATATAGCAAGTACGGTAATTGATATTGGGGAATACAAACCGGAAATTTTCACAAAAAGTCCTCTTTCCAACCCCTATTTTTYCCCTTATTTCTATCTCTAATTTCGGTAAAAGTTAGTGTTCTAAAAATCCCAAAAATACCTATACTAGCAATCTCTCTTACACCCCCTTTACACCTACTGTAGTAGTTATCGCCTTATAATTAATTATTGAATTGGCTTTTAAGCACATCACCACCCTGTTTTTTCTTTTTTTTCGGGCGGTGCCTACTCTTTACTCTTTATTTTTATTTTTTGATTGGTGATAATGTGGTTGCCAGTGGAACATTTTTCCCCCCTAATTCAGTTATAGTGACGGTTTTGAAGTTTATTTTGATTTTTCCAGGTGGCGTTCCATCGGCTAGAAAGGAGGTCATCCGTCACAAGATTCGTGCAATTGGAAAGATGGCTAGAGCTTTCTCAGTTCTCAGGTAATTGAAAGTTTATAGAGATTCTAGAGGCTTCCATTCGGTCCGCCGTCGGCCCAGTGACGGTCAGCTGACGGTCCGCTAACGGACGGCTCGGTTCGCGGTCCGTCGGCCGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCCTTTAATATAGCAAGTACG</pcr_primer_p1>
		<pcr_primer_p2>GCTTAAAAGCCAATTCAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>GGCCTTTAATATAGCAAGTACGGTAATTGATATTGGGGAATACAAACCGGAAATTTTCACAAAAAGTCCTCTTTCCAACCCCTATTTTTCCCCTTATTTCTATCTCTAATTTCGGTAAAAGTTAGTGTTCTAAAAATCCCAAAAATACCTATACTAGCAATCTCTCTTACACCCCCTTTACACCTACTGTAGTAGTTATCGCCTTATAATTAATTATTGAATTGGCTTTTAAGC</canonical_amplicon>
		<polymorphic_amplicon>GGCCTTTAATATAGCAAGTACGGTAATTGATATTGGGGAATACAAACCGGAAATTTTCACAAAAAGTCCTCTTTCCAACCCCTATTTTTYCCCTTATTTCTATCTCTAATTTCGGTAAAAGTTAGTGTTCTAAAAATCCCAAAAATACCTATACTAGCAATCTCTCTTACACCCCCTTTACACCTACTGTAGTAGTTATCGCCTTATAATTAATTATTGAATTGGCTTTTAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28640</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>191857</contig_pos>
        <strand>+</strand>
        <context>ATTCTCAGTA[A/G]AGCACATGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTATTTCTTTTGTAGTTCGGTGAAAATGTGTGCTCTACAATTCTCAGTA</left_flank>
        <right_flank>AGCACATGTGCACTATTTCTTTCTTGAGCTAGATGCAAATTCCCCCCCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTACGGTATCTATTAAGACCAGTGTGTAAGGCTATGAAGCTTTTTACGGTTCAAAAAACCGAAATCCAATGTTTTCAAAAAGAACTTCATTTTTCAGTGGCCGCCGTCTCCGGAGTCGATCAAGGACACACTATCCAAACATTCGAAGAAGCTCGCCGTCTCGATAAAATCAACGAAAGAATGCCACCAACAATGGCGACACCGCCAGCTCAATCACCATCTCAATCGCCAATTCCATCACGGCAAACAACTCCACAACCACCTCAAAATGGACCATCGAATAGTTCATAGTGTGATCCTATACATTGTCAGTCATTTCGTCACATCACACCAGCCGACATATCAAAAAAGAGAGTTCACCGGCAAATGAGGCGATCTGACACTAAACTACTACTACTCCTAAAACAACAGCTTGTTGCGTATATGTATACATATAATTTTATATTACTATTTCTTTTGTAGTTCGGTGAAAATGTGTGCTCTACAATTCTCAGTAGAGCACATGTGCACTATTTCTTTCTTGAGCTAGATGCAAATTCCCCCCCCCCCCACTAATTTTTCCCCAATCACATAGTTTTCACCCTTAGTCCATATTCCCCCGGTCCTCCCCTCCTTGCTCTATTTTGAACCAGTCCAGTGGAGCACACTTTCTTCCAGAATCTTTCTTTTTTTCTCTGTCTCTCTCAAAAAACACACCGCCCCATCCTATAAATTATCGATTTGTGATTGGATCCGTTCTCAGTCTCGTTGCGTGTTTTTAGTCGCCCCACCCCCCTATATTTTTGTGTGCCCTTTTTCCCCTGTCCCTTTAAAAGTTCTATATAGTAACCCCCAGATTTTCCACTTGAGACCCTCCCGTTTACAAAAATCTTTCTTTCTCCCCCAAACTTTTTGCCATTTTCGTTCGTTTCCTTCTCTCTCCCATTTTCTCATTTTCTCTACGAAATATCCTTTTTTGAATTTCCAGATTCATCATCTCGTTTTCCCGTTTGACCTT</canonical>
            <polymorphic>GTTTTACGGTATCTATTAAGACCAGTGTGTAAGGCTATGAAGCTTTTTACGGTTCAAAAAACCGAAATCCAATGTTTTCAAAAAGAACTTCATTTTTCAGTGGCCGCCGTCTCCGGAGTCGATCAAGGACACACTATCCAAACATTCGAAGAAGCTCGCCGTCTCGATAAAATCAACGAAAGAATGCCACCAACAATGGCGACACCGCCAGCTCAATCACCATCTCAATCGCCAATTCCATCACGGCAAACAACTCCACAACCACCTCAAAATGGACCATCGAATAGTTCATAGTGTGATCCTATACATTGTCAGTCATTTCGTCACATCACACCAGCCGACATATCAAAAAAGAGAGTTCACCGGCAAATGAGGCGATCTGACACTAAACTACTACTACTCCTAAAACAACAGCTTGTTGCGTATATGTATACATATAATTTTATATTACTATTTCTTTTGTAGTTCGGTGAAAATGTGTGCTCTACAATTCTCAGTARAGCACATGTGCACTATTTCTTTCTTGAGCTAGATGCAAATTCCCCCCCCCCCCACTAATTTTTCCCCAATCACATAGTTTTCACCCTTAGTCCATATTCCCCCGGTCCTCCCCTCCTTGCTCTATTTTGAACCAGTCCAGTGGAGCACACTTTCTTCCAGAATCTTTCTTTTTTTCTCTGTCTCTCTCAAAAAACACACCGCCCCATCCTATAAATTATCGATTTGTGATTGGATCCGTTCTCAGTCTCGTTGCGTGTTTTTAGTCGCCCCACCCCCCTATATTTTTGTGTGCCCTTTTTCCCCTGTCCCTTTAAAAGTTCTATATAGTAACCCCCAGATTTTCCACTTGAGACCCTCCCGTTTACAAAAATCTTTCTTTCTCCCCCAAACTTTTTGCCATTTTCGTTCGTTTCCTTCTCTCTCCCATTTTCTCATTTTCTCTACGAAATATCCTTTTTTGAATTTCCAGATTCATCATCTCGTTTTCCCGTTTGACCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>484 353 135 20 8</canonical_bands>
                <polymorphic_bands>484 353 135 28</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>484 206 147 135 20 8</canonical_bands>
                <polymorphic_bands>484 206 147 135 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCGATCTGACACTAAACTACTA</pcr_primer_p1>
		<pcr_primer_p2>AATATGGACTAAGGGTGAAAACT</pcr_primer_p2>
		<pcr_amplicon_size>225</pcr_amplicon_size>
		<canonical_amplicon>GGCGATCTGACACTAAACTACTACTACTCCTAAAACAACAGCTTGTTGCGTATATGTATACATATAATTTTATATTACTATTTCTTTTGTAGTTCGGTGAAAATGTGTGCTCTACAATTCTCAGTAGAGCACATGTGCACTATTTCTTTCTTGAGCTAGATGCAAATTCCCCCCCCCCCCACTAATTTTTCCCCAATCACATAGTTTTCACCCTTAGTCCATATT</canonical_amplicon>
		<polymorphic_amplicon>GGCGATCTGACACTAAACTACTACTACTCCTAAAACAACAGCTTGTTGCGTATATGTATACATATAATTTTATATTACTATTTCTTTTGTAGTTCGGTGAAAATGTGTGCTCTACAATTCTCAGTARAGCACATGTGCACTATTTCTTTCTTGAGCTAGATGCAAATTCCCCCCCCCCCCACTAATTTTTCCCCAATCACATAGTTTTCACCCTTAGTCCATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28641</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>191889</contig_pos>
        <strand>+</strand>
        <context>TCTTGAGCTA[A/G]ATGCAAATTY</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTCTACAATTCTCAGTAGAGCACATGTGCACTATTTCTTTCTTGAGCTA</left_flank>
        <right_flank>ATGCAAATTCCCCCCCCCCCCACTAATTTTTCCCCAATCACATAGTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCTATGAAGCTTTTTACGGTTCAAAAAACCGAAATCCAATGTTTTCAAAAAGAACTTCATTTTTCAGTGGCCGCCGTCTCCGGAGTCGATCAAGGACACACTATCCAAACATTCGAAGAAGCTCGCCGTCTCGATAAAATCAACGAAAGAATGCCACCAACAATGGCGACACCGCCAGCTCAATCACCATCTCAATCGCCAATTCCATCACGGCAAACAACTCCACAACCACCTCAAAATGGACCATCGAATAGTTCATAGTGTGATCCTATACATTGTCAGTCATTTCGTCACATCACACCAGCCGACATATCAAAAAAGAGAGTTCACCGGCAAATGAGGCGATCTGACACTAAACTACTACTACTCCTAAAACAACAGCTTGTTGCGTATATGTATACATATAATTTTATATTACTATTTCTTTTGTAGTTCGGTGAAAATGTGTGCTCTACAATTCTCAGTAGAGCACATGTGCACTATTTCTTTCTTGAGCTAGATGCAAATTCCCCCCCCCCCCACTAATTTTTCCCCAATCACATAGTTTTCACCCTTAGTCCATATTCCCCCGGTCCTCCCCTCCTTGCTCTATTTTGAACCAGTCCAGTGGAGCACACTTTCTTCCAGAATCTTTCTTTTTTTCTCTGTCTCTCTCAAAAAACACACCGCCCCATCCTATAAATTATCGATTTGTGATTGGATCCGTTCTCAGTCTCGTTGCGTGTTTTTAGTCGCCCCACCCCCCTATATTTTTGTGTGCCCTTTTTCCCCTGTCCCTTTAAAAGTTCTATATAGTAACCCCCAGATTTTCCACTTGAGACCCTCCCGTTTACAAAAATCTTTCTTTCTCCCCCAAACTTTTTGCCATTTTCGTTCGTTTCCTTCTCTCTCCCATTTTCTCATTTTCTCTACGAAATATCCTTTTTTGAATTTCCAGATTCATCATCTCGTTTTCCCGTTTGACCTTTTTATATATTAACACCTGTTCAATCTTTCTTG</canonical>
            <polymorphic>GGCTATGAAGCTTTTTACGGTTCAAAAAACCGAAATCCAATGTTTTCAAAAAGAACTTCATTTTTCAGTGGCCGCCGTCTCCGGAGTCGATCAAGGACACACTATCCAAACATTCGAAGAAGCTCGCCGTCTCGATAAAATCAACGAAAGAATGCCACCAACAATGGCGACACCGCCAGCTCAATCACCATCTCAATCGCCAATTCCATCACGGCAAACAACTCCACAACCACCTCAAAATGGACCATCGAATAGTTCATAGTGTGATCCTATACATTGTCAGTCATTTCGTCACATCACACCAGCCGACATATCAAAAAAGAGAGTTCACCGGCAAATGAGGCGATCTGACACTAAACTACTACTACTCCTAAAACAACAGCTTGTTGCGTATATGTATACATATAATTTTATATTACTATTTCTTTTGTAGTTCGGTGAAAATGTGTGCTCTACAATTCTCAGTAGAGCACATGTGCACTATTTCTTTCTTGAGCTARATGCAAATTCCCCCCCCCCCCACTAATTTTTCCCCAATCACATAGTTTTCACCCTTAGTCCATATTCCCCCGGTCCTCCCCTCCTTGCTCTATTTTGAACCAGTCCAGTGGAGCACACTTTCTTCCAGAATCTTTCTTTTTTTCTCTGTCTCTCTCAAAAAACACACCGCCCCATCCTATAAATTATCGATTTGTGATTGGATCCGTTCTCAGTCTCGTTGCGTGTTTTTAGTCGCCCCACCCCCCTATATTTTTGTGTGCCCTTTTTCCCCTGTCCCTTTAAAAGTTCTATATAGTAACCCCCAGATTTTCCACTTGAGACCCTCCCGTTTACAAAAATCTTTCTTTCTCCCCCAAACTTTTTGCCATTTTCGTTCGTTTCCTTCTCTCTCCCATTTTCTCATTTTCTCTACGAAATATCCTTTTTTGAATTTCCAGATTCATCATCTCGTTTTCCCGTTTGACCTTTTTATATATTAACACCTGTTCAATCTTTCTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTTCTTTTGTAGTTCGGTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAGAGAGACAGAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTATTTCTTTTGTAGTTCGGTGAAAATGTGTGCTCTACAATTCTCAGTAGAGCACATGTGCACTATTTCTTTCTTGAGCTAGATGCAAATTCCCCCCCCCCCCACTAATTTTTCCCCAATCACATAGTTTTCACCCTTAGTCCATATTCCCCCGGTCCTCCCCTCCTTGCTCTATTTTGAACCAGTCCAGTGGAGCACACTTTCTTCCAGAATCTTTCTTTTTTTCTCTGTCTCTCTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CTATTTCTTTTGTAGTTCGGTGAAAATGTGTGCTCTACAATTCTCAGTAGAGCACATGTGCACTATTTCTTTCTTGAGCTARATGCAAATTCCCCCCCCCCCCACTAATTTTTCCCCAATCACATAGTTTTCACCCTTAGTCCATATTCCCCCGGTCCTCCCCTCCTTGCTCTATTTTGAACCAGTCCAGTGGAGCACACTTTCTTCCAGAATCTTTCTTTTTTTCTCTGTCTCTCTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28642</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>191899</contig_pos>
        <strand>+</strand>
        <context>RATGCAAATT[C/T]CCCCCCCCCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCAGTAGAGCACATGTGCACTATTTCTTTCTTGAGCTAGATGCAAATT</left_flank>
        <right_flank>CCCCCCCCCCCACTAATTTTTCCCCAATCACATAGTTTTCACCCTTAGTC</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTTACGGTTCAAAAAACCGAAATCCAATGTTTTCAAAAAGAACTTCATTTTTCAGTGGCCGCCGTCTCCGGAGTCGATCAAGGACACACTATCCAAACATTCGAAGAAGCTCGCCGTCTCGATAAAATCAACGAAAGAATGCCACCAACAATGGCGACACCGCCAGCTCAATCACCATCTCAATCGCCAATTCCATCACGGCAAACAACTCCACAACCACCTCAAAATGGACCATCGAATAGTTCATAGTGTGATCCTATACATTGTCAGTCATTTCGTCACATCACACCAGCCGACATATCAAAAAAGAGAGTTCACCGGCAAATGAGGCGATCTGACACTAAACTACTACTACTCCTAAAACAACAGCTTGTTGCGTATATGTATACATATAATTTTATATTACTATTTCTTTTGTAGTTCGGTGAAAATGTGTGCTCTACAATTCTCAGTAGAGCACATGTGCACTATTTCTTTCTTGAGCTAGATGCAAATTCCCCCCCCCCCCACTAATTTTTCCCCAATCACATAGTTTTCACCCTTAGTCCATATTCCCCCGGTCCTCCCCTCCTTGCTCTATTTTGAACCAGTCCAGTGGAGCACACTTTCTTCCAGAATCTTTCTTTTTTTCTCTGTCTCTCTCAAAAAACACACCGCCCCATCCTATAAATTATCGATTTGTGATTGGATCCGTTCTCAGTCTCGTTGCGTGTTTTTAGTCGCCCCACCCCCCTATATTTTTGTGTGCCCTTTTTCCCCTGTCCCTTTAAAAGTTCTATATAGTAACCCCCAGATTTTCCACTTGAGACCCTCCCGTTTACAAAAATCTTTCTTTCTCCCCCAAACTTTTTGCCATTTTCGTTCGTTTCCTTCTCTCTCCCATTTTCTCATTTTCTCTACGAAATATCCTTTTTTGAATTTCCAGATTCATCATCTCGTTTTCCCGTTTGACCTTTTTATATATTAACACCTGTTCAATCTTTCTTGATCCCTTTTT</canonical>
            <polymorphic>CTTTTTACGGTTCAAAAAACCGAAATCCAATGTTTTCAAAAAGAACTTCATTTTTCAGTGGCCGCCGTCTCCGGAGTCGATCAAGGACACACTATCCAAACATTCGAAGAAGCTCGCCGTCTCGATAAAATCAACGAAAGAATGCCACCAACAATGGCGACACCGCCAGCTCAATCACCATCTCAATCGCCAATTCCATCACGGCAAACAACTCCACAACCACCTCAAAATGGACCATCGAATAGTTCATAGTGTGATCCTATACATTGTCAGTCATTTCGTCACATCACACCAGCCGACATATCAAAAAAGAGAGTTCACCGGCAAATGAGGCGATCTGACACTAAACTACTACTACTCCTAAAACAACAGCTTGTTGCGTATATGTATACATATAATTTTATATTACTATTTCTTTTGTAGTTCGGTGAAAATGTGTGCTCTACAATTCTCAGTAGAGCACATGTGCACTATTTCTTTCTTGAGCTAGATGCAAATTYCCCCCCCCCCCACTAATTTTTCCCCAATCACATAGTTTTCACCCTTAGTCCATATTCCCCCGGTCCTCCCCTCCTTGCTCTATTTTGAACCAGTCCAGTGGAGCACACTTTCTTCCAGAATCTTTCTTTTTTTCTCTGTCTCTCTCAAAAAACACACCGCCCCATCCTATAAATTATCGATTTGTGATTGGATCCGTTCTCAGTCTCGTTGCGTGTTTTTAGTCGCCCCACCCCCCTATATTTTTGTGTGCCCTTTTTCCCCTGTCCCTTTAAAAGTTCTATATAGTAACCCCCAGATTTTCCACTTGAGACCCTCCCGTTTACAAAAATCTTTCTTTCTCCCCCAAACTTTTTGCCATTTTCGTTCGTTTCCTTCTCTCTCCCATTTTCTCATTTTCTCTACGAAATATCCTTTTTTGAATTTCCAGATTCATCATCTCGTTTTCCCGTTTGACCTTTTTATATATTAACACCTGTTCAATCTTTCTTGATCCCTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>495 424 81</canonical_bands>
                <polymorphic_bands>919 81</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTTCTTTTGTAGTTCGGTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAGAGAGACAGAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTATTTCTTTTGTAGTTCGGTGAAAATGTGTGCTCTACAATTCTCAGTAGAGCACATGTGCACTATTTCTTTCTTGAGCTAGATGCAAATTCCCCCCCCCCCCACTAATTTTTCCCCAATCACATAGTTTTCACCCTTAGTCCATATTCCCCCGGTCCTCCCCTCCTTGCTCTATTTTGAACCAGTCCAGTGGAGCACACTTTCTTCCAGAATCTTTCTTTTTTTCTCTGTCTCTCTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CTATTTCTTTTGTAGTTCGGTGAAAATGTGTGCTCTACAATTCTCAGTAGAGCACATGTGCACTATTTCTTTCTTGAGCTAGATGCAAATTYCCCCCCCCCCCACTAATTTTTCCCCAATCACATAGTTTTCACCCTTAGTCCATATTCCCCCGGTCCTCCCCTCCTTGCTCTATTTTGAACCAGTCCAGTGGAGCACACTTTCTTCCAGAATCTTTCTTTTTTTCTCTGTCTCTCTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28643</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>193215</contig_pos>
        <strand>+</strand>
        <context>TAATCAAAAA[C/T]AMRTAAGRTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTATCTAATAGAGTTTTTACGATAACAGCGAAAAAGGAATAATCAAAAA</left_flank>
        <right_flank>ACGTAAGATCTTAATTAGTACCTTCTGGCCATACGACTACTGTAAGTGCA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATGAAGCTCTGAAAAAATAATTTTTATTTGATTTCAAACAAGACGAAATGGAAATTCAAAAGTTAGACCAACATTCAACGATGATTTAAAACAGAATAAGAAGTTATAAATTATTGTAACACCTGTAATAGAAGGGCTTCTTAACTTTCAACTTTGATCTAATTTTTTTGGTTCCTATGAGAGATATGAGAAATTTTTTGTCAGTTGACACATTTTTGAAATTTTTCGTAGGAACTGAGATAATTGAGCTCAAACTTGACAGTGTGGAAAAAAATTACAAAACTTCGTATCAAGAAATCAAATACAATAGATATAAAAATACAGTTTAACAAATACAGTAAAAACTCTATTAGAAAGTCATGGCACTATATTGCCCGGTGGGTGTCTAGGGTGGCACTGTATTAGGGGGTGGCACTATATTAGAGGCTGGCATTCAATTAAGGGAGGCTATCTAATAGAGTTTTTACGATAACAGCGAAAAAGGAATAATCAAAAATACGTAAGATCTTAATTAGTACCTTCTGGCCATACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCATCATTGTCATGCATTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCGTTTTATATCCAGCCCTCCGAAAAAAGCGCACGGCGTTGAAACGCTGTAATTATAGAAATTAACATTTCAGCAACAATTTCAAAAACCCACAACACAAAAGTTCGAATCAATGACTCTTCTCTTTCCACTACATTCAGACCATCGGTTAGCTCAATCATCATATCTTCACTTTCAATAATATTAGCAGTGATGTATTCCATTCTTTGATTGCTTCCATTTTTCCACGACTTCAAAAACGTGTTCCATTCTGTCGGTGTGAATTCAGATGTATCAAGTTGAATGTGTTTGCAGTCCGAATTCGAAATGTCTTTCAGGGACATCCAGTTGTTTGATGGATGATCAGTAACACTCAAAAAGTCGCATTTGAATTTCGGAT</canonical>
            <polymorphic>AAAATGAAGCTCTGAAAAAATAATTTTTATTTGATTTCAAACAAGACGAAATGGAAATTCAAAAGTTAGACCAACATTCAACGATGATTTAAAACAGAATAAGAAGTTATAAATTATTGTAACACCTGTAATAGAAGGGCTTCTTAACTTTCAACTTTGATCTAATTTTTTTGGTTCCTATGAGAGATATGAGAAATTTTTTGTCAGTTGACACATTTTTGAAATTTTTCGTAGGAACTGAGATAATTGAGCTCAAACTTGACAGTGTGGAAAAAAATTACAAAACTTCGTATCAAGAAATCAAATACAATAGATATAAAAATACAGTTTAACAAATACAGTAAAAACTCTATTAGAAAGTCATGGCACTATATTGCCCGGTGGGTGTCTAGGGTGGCACTGTATTAGGGGGTGGCACTATATTAGAGGCTGGCATTCAATTAAGGGAGGCTATCTAATAGAGTTTTTACGATAACAGCGAAAAAGGAATAATCAAAAAYACGTAAGATCTTAATTAGTACCTTCTGGCCATACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCATCATTGTCATGCATTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCGTTTTATATCCAGCCCTCCGAAAAAAGCGCACGGCGTTGAAACGCTGTAATTATAGAAATTAACATTTCAGCAACAATTTCAAAAACCCACAACACAAAAGTTCGAATCAATGACTCTTCTCTTTCCACTACATTCAGACCATCGGTTAGCTCAATCATCATATCTTCACTTTCAATAATATTAGCAGTGATGTATTCCATTCTTTGATTGCTTCCATTTTTCCACGACTTCAAAAACGTGTTCCATTCTGTCGGTGTGAATTCAGATGTATCAAGTTGAATGTGTTTGCAGTCCGAATTCGAAATGTCTTTCAGGGACATCCAGTTGTTTGATGGATGATCAGTAACACTCAAAAAGTCGCATTTGAATTTCGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TACGTA</site>
                <isoschizomers>
                    <enzyme>BstSNI</enzyme>
                    <enzyme>Eco105I</enzyme>
                    <enzyme>SnaBI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGTATCAAGAAATCAAATACAA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCGTGCACTTACAGTAGTC</pcr_primer_p2>
		<pcr_amplicon_size>270</pcr_amplicon_size>
		<canonical_amplicon>TCGTATCAAGAAATCAAATACAATAGATATAAAAATACAGTTTAACAAATACAGTAAAAACTCTATTAGAAAGTCATGGCACTATATTGCCCGGTGGGTGTCTAGGGTGGCACTGTATTAGGGGGTGGCACTATATTAGAGGCTGGCATTCAATTAAGGGAGGCTATCTAATAGAGTTTTTACGATAACAGCGAAAAAGGAATAATCAAAAATACGTAAGATCTTAATTAGTACCTTCTGGCCATACGACTACTGTAAGTGCACGAATTT</canonical_amplicon>
		<polymorphic_amplicon>TCGTATCAAGAAATCAAATACAATAGATATAAAAATACAGTTTAACAAATACAGTAAAAACTCTATTAGAAAGTCATGGCACTATATTGCCCGGTGGGTGTCTAGGGTGGCACTGTATTAGGGGGTGGCACTATATTAGAGGCTGGCATTCAATTAAGGGAGGCTATCTAATAGAGTTTTTACGATAACAGCGAAAAAGGAATAATCAAAAAYACGTAAGATCTTAATTAGTACCTTCTGGCCATACGACTACTGTAAGTGCACGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28644</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>193223</contig_pos>
        <strand>+</strand>
        <context>AAYAMRTAAG[A/G]TCTTAATTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAGAGTTTTTACGATAACAGCGAAAAAGGAATAATCAAAAATACGTAAG</left_flank>
        <right_flank>TCTTAATTAGTACCTTCTGGCCATACGACTACTGTAAGTGCACGAATTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTCTGAAAAAATAATTTTTATTTGATTTCAAACAAGACGAAATGGAAATTCAAAAGTTAGACCAACATTCAACGATGATTTAAAACAGAATAAGAAGTTATAAATTATTGTAACACCTGTAATAGAAGGGCTTCTTAACTTTCAACTTTGATCTAATTTTTTTGGTTCCTATGAGAGATATGAGAAATTTTTTGTCAGTTGACACATTTTTGAAATTTTTCGTAGGAACTGAGATAATTGAGCTCAAACTTGACAGTGTGGAAAAAAATTACAAAACTTCGTATCAAGAAATCAAATACAATAGATATAAAAATACAGTTTAACAAATACAGTAAAAACTCTATTAGAAAGTCATGGCACTATATTGCCCGGTGGGTGTCTAGGGTGGCACTGTATTAGGGGGTGGCACTATATTAGAGGCTGGCATTCAATTAAGGGAGGCTATCTAATAGAGTTTTTACGATAACAGCGAAAAAGGAATAATCAAAAATACGTAAGATCTTAATTAGTACCTTCTGGCCATACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCATCATTGTCATGCATTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCGTTTTATATCCAGCCCTCCGAAAAAAGCGCACGGCGTTGAAACGCTGTAATTATAGAAATTAACATTTCAGCAACAATTTCAAAAACCCACAACACAAAAGTTCGAATCAATGACTCTTCTCTTTCCACTACATTCAGACCATCGGTTAGCTCAATCATCATATCTTCACTTTCAATAATATTAGCAGTGATGTATTCCATTCTTTGATTGCTTCCATTTTTCCACGACTTCAAAAACGTGTTCCATTCTGTCGGTGTGAATTCAGATGTATCAAGTTGAATGTGTTTGCAGTCCGAATTCGAAATGTCTTTCAGGGACATCCAGTTGTTTGATGGATGATCAGTAACACTCAAAAAGTCGCATTTGAATTTCGGATGAAGAGGT</canonical>
            <polymorphic>GCTCTGAAAAAATAATTTTTATTTGATTTCAAACAAGACGAAATGGAAATTCAAAAGTTAGACCAACATTCAACGATGATTTAAAACAGAATAAGAAGTTATAAATTATTGTAACACCTGTAATAGAAGGGCTTCTTAACTTTCAACTTTGATCTAATTTTTTTGGTTCCTATGAGAGATATGAGAAATTTTTTGTCAGTTGACACATTTTTGAAATTTTTCGTAGGAACTGAGATAATTGAGCTCAAACTTGACAGTGTGGAAAAAAATTACAAAACTTCGTATCAAGAAATCAAATACAATAGATATAAAAATACAGTTTAACAAATACAGTAAAAACTCTATTAGAAAGTCATGGCACTATATTGCCCGGTGGGTGTCTAGGGTGGCACTGTATTAGGGGGTGGCACTATATTAGAGGCTGGCATTCAATTAAGGGAGGCTATCTAATAGAGTTTTTACGATAACAGCGAAAAAGGAATAATCAAAAATACGTAAGRTCTTAATTAGTACCTTCTGGCCATACGACTACTGTAAGTGCACGAATTTGTTTTCCGTCATCATTGTCATGCATTATTGGTCCAATTACAACCGATGCAACTTTCTCATCCTCTCGTTTTATATCCAGCCCTCCGAAAAAAGCGCACGGCGTTGAAACGCTGTAATTATAGAAATTAACATTTCAGCAACAATTTCAAAAACCCACAACACAAAAGTTCGAATCAATGACTCTTCTCTTTCCACTACATTCAGACCATCGGTTAGCTCAATCATCATATCTTCACTTTCAATAATATTAGCAGTGATGTATTCCATTCTTTGATTGCTTCCATTTTTCCACGACTTCAAAAACGTGTTCCATTCTGTCGGTGTGAATTCAGATGTATCAAGTTGAATGTGTTTGCAGTCCGAATTCGAAATGTCTTTCAGGGACATCCAGTTGTTTGATGGATGATCAGTAACACTCAAAAAGTCGCATTTGAATTTCGGATGAAGAGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>455 348 150 47</canonical_bands>
                <polymorphic_bands>803 150 47</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGTATCAAGAAATCAAATACAA</pcr_primer_p1>
		<pcr_primer_p2>AACAAATTCGTGCACTTACAG</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>TCGTATCAAGAAATCAAATACAATAGATATAAAAATACAGTTTAACAAATACAGTAAAAACTCTATTAGAAAGTCATGGCACTATATTGCCCGGTGGGTGTCTAGGGTGGCACTGTATTAGGGGGTGGCACTATATTAGAGGCTGGCATTCAATTAAGGGAGGCTATCTAATAGAGTTTTTACGATAACAGCGAAAAAGGAATAATCAAAAATACGTAAGATCTTAATTAGTACCTTCTGGCCATACGACTACTGTAAGTGCACGAATTTGTT</canonical_amplicon>
		<polymorphic_amplicon>TCGTATCAAGAAATCAAATACAATAGATATAAAAATACAGTTTAACAAATACAGTAAAAACTCTATTAGAAAGTCATGGCACTATATTGCCCGGTGGGTGTCTAGGGTGGCACTGTATTAGGGGGTGGCACTATATTAGAGGCTGGCATTCAATTAAGGGAGGCTATCTAATAGAGTTTTTACGATAACAGCGAAAAAGGAATAATCAAAAATACGTAAGRTCTTAATTAGTACCTTCTGGCCATACGACTACTGTAAGTGCACGAATTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28645</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>204304</contig_pos>
        <strand></strand>
        <context>AAGAAGGCCC[C/G]GCAAAGGCCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAGGTAAATAGAACGTGTAAATGATTTACAAAAAGTAAAAAAGAAGGCCC</left_flank>
        <right_flank>GCAAAGGCCCGGATTACAAGTATGCGTTTACCTAGGTAAATGTTCATGAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGAATACTTGCATCAAAAAATATTTCCTTCTGAATCAACATCATCTAATATCCCATACAGTAAGACCTAAAGTTAGTGCTCTGATAGCTGGAAATTTCCTCAAAACCTTGTTTGCGTCTTCTGAAGCTATCAACTATCACCAGCTATGACTACCAGTTTTTTTTGAACAAATAAAGTGCAAAGTAGGTTGTTTGGGGTTATCTTATTGTTTAATAAGTAATTGAGTAACTTAAAAACATTCAGACTTCCGGTACTCAGTGCCTGATGCGTGTCTTAAATTCCGTACATGTGTGAGGTAAGCGGCGCGAATGCAAAACAGTATACTAATGAGTTCCTAACAACTGAATAAAAAGAATACGGGGGACCAGAGATAACGGAAAGGACAAACGACAGGGGAGATACCGGAATGAACAGAAATCGGAGGCCGTATTCATGAACATTTACTTTTAGGTAAATAGAACGTGTAAATGATTTACAAAAAGTAAAAAAGAAGGCCCCGCAAAGGCCCGGATTACAAGTATGCGTTTACCTAGGTAAATGTTCATGAATACGGCCTCGGAATAAAAGAGAATGGTCAAGAAAACCTTTGTAAATTTTTTGGATCTAACGATTATGATCCGAATTATTATGTTCGGGCAACAGTATAACCGTTCCACCAAAAAGACTCCGAAACGTCTCCTAAAAAGAAAAAAAGGTGAGCCTTAATTTTCATTGAACTGTTATCAGCTTACTTCATATGAGTACCGGATAGACTAACATTTTTTATTCAACAAAAAGTATACAGGAATATACATATATACAAATATATACAAATAAGAATCCGATCATGATTTCATAACTTCTCTTTGGTCGTCTCCCCCTTTCTTTCATTTTCAATTTCCTGAATCGATCTTTTCGATGGTATCACTGGCAAGTATGTCAACCAATGATACTTTAAGAAGAATCTATTGACACATGAAGGAAGTGCATAGCCATTGTGCTTCACATCAGGAATCATT</canonical>
            <polymorphic>AATGAATACTTGCATCAAAAAATATTTCCTTCTGAATCAACATCATCTAATATCCCATACAGTAAGACCTAAAGTTAGTGCTCTGATAGCTGGAAATTTCCTCAAAACCTTGTTTGCGTCTTCTGAAGCTATCAACTATCACCAGCTATGACTACCAGTTTTTTTTGAACAAATAAAGTGCAAAGTAGGTTGTTTGGGGTTATCTTATTGTTTAATAAGTAATTGAGTAACTTAAAAACATTCAGACTTCCGGTACTCAGTGCCTGATGCGTGTCTTAAATTCCGTACATGTGTGAGGTAAGCGGCGCGAATGCAAAACAGTATACTAATGAGTTCCTAACAACTGAATAAAAAGAATACGGGGGACCAGAGATAACGGAAAGGACAAACGACAGGGGAGATACCGGAATGAACAGAAATCGGAGGCCGTATTCATGAACATTTACTTTTAGGTAAATAGAACGTGTAAATGATTTACAAAAAGTAAAAAAGAAGGCCCSGCAAAGGCCCGGATTACAAGTATGCGTTTACCTAGGTAAATGTTCATGAATACGGCCTCGGAATAAAAGAGAATGGTCAAGAAAACCTTTGTAAATTTTTTGGATCTAACGATTATGATCCGAATTATTATGTTCGGGCAACAGTATAACCGTTCCACCAAAAAGACTCCGAAACGTCTCCTAAAAAGAAAAAAAGGTGAGCCTTAATTTTCATTGAACTGTTATCAGCTTACTTCATATGAGTACCGGATAGACTAACATTTTTTATTCAACAAAAAGTATACAGGAATATACATATATACAAATATATACAAATAAGAATCCGATCATGATTTCATAACTTCTCTTTGGTCGTCTCCCCCTTTCTTTCATTTTCAATTTCCTGAATCGATCTTTTCGATGGTATCACTGGCAAGTATGTCAACCAATGATACTTTAAGAAGAATCTATTGACACATGAAGGAAGTGCATAGCCATTGTGCTTCACATCAGGAATCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>503 365 132</canonical_bands>
                <polymorphic_bands>635 365</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGATAACGGAAAGGACAAAC</pcr_primer_p1>
		<pcr_primer_p2>GATCATAATCGTTAGATCCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAGATAACGGAAAGGACAAACGACAGGGGAGATACCGGAATGAACAGAAATCGGAGGCCGTATTCATGAACATTTACTTTTAGGTAAATAGAACGTGTAAATGATTTACAAAAAGTAAAAAAGAAGGCCCCGCAAAGGCCCGGATTACAAGTATGCGTTTACCTAGGTAAATGTTCATGAATACGGCCTCGGAATAAAAGAGAATGGTCAAGAAAACCTTTGTAAATTTTTTGGATCTAACGATTATGATC</canonical_amplicon>
		<polymorphic_amplicon>GAGATAACGGAAAGGACAAACGACAGGGGAGATACCGGAATGAACAGAAATCGGAGGCCGTATTCATGAACATTTACTTTTAGGTAAATAGAACGTGTAAATGATTTACAAAAAGTAAAAAAGAAGGCCCSGCAAAGGCCCGGATTACAAGTATGCGTTTACCTAGGTAAATGTTCATGAATACGGCCTCGGAATAAAAGAGAATGGTCAAGAAAACCTTTGTAAATTTTTTGGATCTAACGATTATGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28646</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>230167</contig_pos>
        <strand></strand>
        <context>Gcaaaaacaa[T/G]ctaattccta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATCTTACTGACAAGAAAACTCAAAAAATTATCTTTTGAACGCAAAAACAA</left_flank>
        <right_flank>CTAATTCCTAGGACTATTTTGAGTCGAGTTACTGAAGTTATAGAGCGAGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTAGAAGGGGACATGCTAATTGGATGCTCTTTTTGTCATCCCATTCAGAAGAAAAAGAAAATCTGTCCCATTTTAGGGGGAGAAAGAGGGCTAATTGTGGTCGGGTGTACTACTAGAGTGACTTTTTGAACCGAATGAGAAAGAGGCGGAGTTTGAAGACGTGTCGAATGGAAGAAAATAGGAGGAGGGAGATAAAAGTAATTGGGTCGTTATGGAGAAGTACAGAGAATTTTTTGTGCGGTGGTGGAGAAAATGGATTTTGCAGAATAGGAAAAAGATTGAAAGCTATAAGATTTTAAGTGGTATTTCGAAGAAATGACGTTAAGTGAATCTACAAAAAAAGTGGACATCCGGACAAACAGAAACTGTTGATGTCCAAAATCTAGGGAGATTTGATAAGTAAGAAATTGAGCAAGGCGCATAGCAAGCCGCATAAAAATTCATTTATCTTACTGACAAGAAAACTCAAAAAATTATCTTTTGAACGCAAAAACAATCTAATTCCTAGGACTATTTTGAGTCGAGTTACTGAAGTTATAGAGCGAGAGACGCAGTGTGTCTCGTTTCTCTGCGTATCTCACCTCAAAACTTTAAATGACTGTAACTCGGCTCAAAATCATGCTCCTAGCTCAATTTTGAACGGGTTTGGCATAAATTTTTTTTTCTACTTTTTGTTGATATTTTAAAAAAATAAACAACTTTTAAAACCAATTTTCGATTTTTTGCGGGCTGATGTGGGATTCCTTGATTTCTTTCGAACTTTAATCTCCTCCCTCTTTTTTGCCTAATTTGAATACCTAAACATACAGGAAACAGATGTCCTTCACTGAAACTAATTCTTTGCAGAGCACAAAAAAAACACAGAATAAAGAAACGGACGCGGGGCACAAATAGTGCATAATTGATGGGAGAAAATGTAGGGACGGACACTGGATAAAAAAGTGGATTACAATGGTATATCATTAGTAACGTTTTGAATCTGAAATTCCAAAAAAAA</canonical>
            <polymorphic>TATTTAGAAGGGGACATGCTAATTGGATGCTCTTTTTGTCATCCCATTCAGAAGAAAAAGAAAATCTGTCCCATTTTAGGGGGAGAAAGAGGGCTAATTGTGGTCGGGTGTACTACTAGAGTGACTTTTTGAACCGAATGAGAAAGAGGCGGAGTTTGAAGACGTGTCGAATGGAAGAAAATAGGAGGAGGGAGATAAAAGTAATTGGGTCGTTATGGAGAAGTACAGAGAATTTTTTGTGCGGTGGTGGAGAAAATGGATTTTGCAGAATAGGAAAAAGATTGAAAGCTATAAGATTTTAAGTGGTATTTCGAAGAAATGACGTTAAGTGAATCTACAAAAAAAGTGGACATCCGGACAAACAGAAACTGTTGATGTCCAAAATCTAGGGAGATTTGATAAGTAAGAAATTGAGCAAGGCGCATAGCAAGCCGCATAAAAATTCATTTATCTTACTGACAAGAAAACTCAAAAAATTATCTTTTGAACGCAAAAACAAKCTAATTCCTAGGACTATTTTGAGTCGAGTTACTGAAGTTATAGAGCGAGAGACGCAGTGTGTCTCGTTTCTCTGCGTATCTCACCTCAAAACTTTAAATGACTGTAACTCGGCTCAAAATCATGCTCCTAGCTCAATTTTGAACGGGTTTGGCATAAATTTTTTTTTCTACTTTTTGTTGATATTTTAAAAAAATAAACAACTTTTAAAACCAATTTTCGATTTTTTGCGGGCTGATGTGGGATTCCTTGATTTCTTTCGAACTTTAATCTCCTCCCTCTTTTTTGCCTAATTTGAATACCTAAACATACAGGAAACAGATGTCCTTCACTGAAACTAATTCTTTGCAGAGCACAAAAAAAACACAGAATAAAGAAACGGACGCGGGGCACAAATAGTGCATAATTGATGGGAGAAAATGTAGGGACGGACACTGGATAAAAAAGTGGATTACAATGGTATATCATTAGTAACGTTTTGAATCTGAAATTCCAAAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTATCTTACTGACAAGAAAACTC</pcr_primer_p1>
		<pcr_primer_p2>ATCGAAAATTGGTTTTAAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>278</pcr_amplicon_size>
		<canonical_amplicon>CATTTATCTTACTGACAAGAAAACTCAAAAAATTATCTTTTGAACGCAAAAACAATCTAATTCCTAGGACTATTTTGAGTCGAGTTACTGAAGTTATAGAGCGAGAGACGCAGTGTGTCTCGTTTCTCTGCGTATCTCACCTCAAAACTTTAAATGACTGTAACTCGGCTCAAAATCATGCTCCTAGCTCAATTTTGAACGGGTTTGGCATAAATTTTTTTTTCTACTTTTTGTTGATATTTTAAAAAAATAAACAACTTTTAAAACCAATTTTCGAT</canonical_amplicon>
		<polymorphic_amplicon>CATTTATCTTACTGACAAGAAAACTCAAAAAATTATCTTTTGAACGCAAAAACAAKCTAATTCCTAGGACTATTTTGAGTCGAGTTACTGAAGTTATAGAGCGAGAGACGCAGTGTGTCTCGTTTCTCTGCGTATCTCACCTCAAAACTTTAAATGACTGTAACTCGGCTCAAAATCATGCTCCTAGCTCAATTTTGAACGGGTTTGGCATAAATTTTTTTTTCTACTTTTTGTTGATATTTTAAAAAAATAAACAACTTTTAAAACCAATTTTCGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28647</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>230210</contig_pos>
        <strand></strand>
        <context>tgaagttata[G/A]agcgagagac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAACAATCTAATTCCTAGGACTATTTTGAGTCGAGTTACTGAAGTTATA</left_flank>
        <right_flank>AGCGAGAGACGCAGTGTGTCTCGTTTCTCTGCGTATCTCACCTCAAAACT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATTCAGAAGAAAAAGAAAATCTGTCCCATTTTAGGGGGAGAAAGAGGGCTAATTGTGGTCGGGTGTACTACTAGAGTGACTTTTTGAACCGAATGAGAAAGAGGCGGAGTTTGAAGACGTGTCGAATGGAAGAAAATAGGAGGAGGGAGATAAAAGTAATTGGGTCGTTATGGAGAAGTACAGAGAATTTTTTGTGCGGTGGTGGAGAAAATGGATTTTGCAGAATAGGAAAAAGATTGAAAGCTATAAGATTTTAAGTGGTATTTCGAAGAAATGACGTTAAGTGAATCTACAAAAAAAGTGGACATCCGGACAAACAGAAACTGTTGATGTCCAAAATCTAGGGAGATTTGATAAGTAAGAAATTGAGCAAGGCGCATAGCAAGCCGCATAAAAATTCATTTATCTTACTGACAAGAAAACTCAAAAAATTATCTTTTGAACGCAAAAACAATCTAATTCCTAGGACTATTTTGAGTCGAGTTACTGAAGTTATAGAGCGAGAGACGCAGTGTGTCTCGTTTCTCTGCGTATCTCACCTCAAAACTTTAAATGACTGTAACTCGGCTCAAAATCATGCTCCTAGCTCAATTTTGAACGGGTTTGGCATAAATTTTTTTTTCTACTTTTTGTTGATATTTTAAAAAAATAAACAACTTTTAAAACCAATTTTCGATTTTTTGCGGGCTGATGTGGGATTCCTTGATTTCTTTCGAACTTTAATCTCCTCCCTCTTTTTTGCCTAATTTGAATACCTAAACATACAGGAAACAGATGTCCTTCACTGAAACTAATTCTTTGCAGAGCACAAAAAAAACACAGAATAAAGAAACGGACGCGGGGCACAAATAGTGCATAATTGATGGGAGAAAATGTAGGGACGGACACTGGATAAAAAAGTGGATTACAATGGTATATCATTAGTAACGTTTTGAATCTGAAATTCCAAAAAAAAGAAGGTTGGATAAGATCTGGATGATCCTATTTACTTGAGCTAA</canonical>
            <polymorphic>CCATTCAGAAGAAAAAGAAAATCTGTCCCATTTTAGGGGGAGAAAGAGGGCTAATTGTGGTCGGGTGTACTACTAGAGTGACTTTTTGAACCGAATGAGAAAGAGGCGGAGTTTGAAGACGTGTCGAATGGAAGAAAATAGGAGGAGGGAGATAAAAGTAATTGGGTCGTTATGGAGAAGTACAGAGAATTTTTTGTGCGGTGGTGGAGAAAATGGATTTTGCAGAATAGGAAAAAGATTGAAAGCTATAAGATTTTAAGTGGTATTTCGAAGAAATGACGTTAAGTGAATCTACAAAAAAAGTGGACATCCGGACAAACAGAAACTGTTGATGTCCAAAATCTAGGGAGATTTGATAAGTAAGAAATTGAGCAAGGCGCATAGCAAGCCGCATAAAAATTCATTTATCTTACTGACAAGAAAACTCAAAAAATTATCTTTTGAACGCAAAAACAATCTAATTCCTAGGACTATTTTGAGTCGAGTTACTGAAGTTATARAGCGAGAGACGCAGTGTGTCTCGTTTCTCTGCGTATCTCACCTCAAAACTTTAAATGACTGTAACTCGGCTCAAAATCATGCTCCTAGCTCAATTTTGAACGGGTTTGGCATAAATTTTTTTTTCTACTTTTTGTTGATATTTTAAAAAAATAAACAACTTTTAAAACCAATTTTCGATTTTTTGCGGGCTGATGTGGGATTCCTTGATTTCTTTCGAACTTTAATCTCCTCCCTCTTTTTTGCCTAATTTGAATACCTAAACATACAGGAAACAGATGTCCTTCACTGAAACTAATTCTTTGCAGAGCACAAAAAAAACACAGAATAAAGAAACGGACGCGGGGCACAAATAGTGCATAATTGATGGGAGAAAATGTAGGGACGGACACTGGATAAAAAAGTGGATTACAATGGTATATCATTAGTAACGTTTTGAATCTGAAATTCCAAAAAAAAGAAGGTTGGATAAGATCTGGATGATCCTATTTACTTGAGCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTACTGACAAGAAAACTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATCGAAAATTGGTTTTAAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>TCTTACTGACAAGAAAACTCAAAAAATTATCTTTTGAACGCAAAAACAATCTAATTCCTAGGACTATTTTGAGTCGAGTTACTGAAGTTATAGAGCGAGAGACGCAGTGTGTCTCGTTTCTCTGCGTATCTCACCTCAAAACTTTAAATGACTGTAACTCGGCTCAAAATCATGCTCCTAGCTCAATTTTGAACGGGTTTGGCATAAATTTTTTTTTCTACTTTTTGTTGATATTTTAAAAAAATAAACAACTTTTAAAACCAATTTTCGAT</canonical_amplicon>
		<polymorphic_amplicon>TCTTACTGACAAGAAAACTCAAAAAATTATCTTTTGAACGCAAAAACAATCTAATTCCTAGGACTATTTTGAGTCGAGTTACTGAAGTTATARAGCGAGAGACGCAGTGTGTCTCGTTTCTCTGCGTATCTCACCTCAAAACTTTAAATGACTGTAACTCGGCTCAAAATCATGCTCCTAGCTCAATTTTGAACGGGTTTGGCATAAATTTTTTTTTCTACTTTTTGTTGATATTTTAAAAAAATAAACAACTTTTAAAACCAATTTTCGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28648</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>230230</contig_pos>
        <strand></strand>
        <context>cgcagtgtgt[C/A]tcgtttctct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ACTATTTTGAGTCGAGTTACTGAAGTTATAGAGCGAGAGACGCAGTGTGT</left_flank>
        <right_flank>TCGTTTCTCTGCGTATCTCACCTCAAAACTTTAAATGACTGTAACTCGGC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTGTCCCATTTTAGGGGGAGAAAGAGGGCTAATTGTGGTCGGGTGTACTACTAGAGTGACTTTTTGAACCGAATGAGAAAGAGGCGGAGTTTGAAGACGTGTCGAATGGAAGAAAATAGGAGGAGGGAGATAAAAGTAATTGGGTCGTTATGGAGAAGTACAGAGAATTTTTTGTGCGGTGGTGGAGAAAATGGATTTTGCAGAATAGGAAAAAGATTGAAAGCTATAAGATTTTAAGTGGTATTTCGAAGAAATGACGTTAAGTGAATCTACAAAAAAAGTGGACATCCGGACAAACAGAAACTGTTGATGTCCAAAATCTAGGGAGATTTGATAAGTAAGAAATTGAGCAAGGCGCATAGCAAGCCGCATAAAAATTCATTTATCTTACTGACAAGAAAACTCAAAAAATTATCTTTTGAACGCAAAAACAATCTAATTCCTAGGACTATTTTGAGTCGAGTTACTGAAGTTATAGAGCGAGAGACGCAGTGTGTCTCGTTTCTCTGCGTATCTCACCTCAAAACTTTAAATGACTGTAACTCGGCTCAAAATCATGCTCCTAGCTCAATTTTGAACGGGTTTGGCATAAATTTTTTTTTCTACTTTTTGTTGATATTTTAAAAAAATAAACAACTTTTAAAACCAATTTTCGATTTTTTGCGGGCTGATGTGGGATTCCTTGATTTCTTTCGAACTTTAATCTCCTCCCTCTTTTTTGCCTAATTTGAATACCTAAACATACAGGAAACAGATGTCCTTCACTGAAACTAATTCTTTGCAGAGCACAAAAAAAACACAGAATAAAGAAACGGACGCGGGGCACAAATAGTGCATAATTGATGGGAGAAAATGTAGGGACGGACACTGGATAAAAAAGTGGATTACAATGGTATATCATTAGTAACGTTTTGAATCTGAAATTCCAAAAAAAAGAAGGTTGGATAAGATCTGGATGATCCTATTTACTTGAGCTAAAAAAAATAGGGGAAATTCGT</canonical>
            <polymorphic>ATCTGTCCCATTTTAGGGGGAGAAAGAGGGCTAATTGTGGTCGGGTGTACTACTAGAGTGACTTTTTGAACCGAATGAGAAAGAGGCGGAGTTTGAAGACGTGTCGAATGGAAGAAAATAGGAGGAGGGAGATAAAAGTAATTGGGTCGTTATGGAGAAGTACAGAGAATTTTTTGTGCGGTGGTGGAGAAAATGGATTTTGCAGAATAGGAAAAAGATTGAAAGCTATAAGATTTTAAGTGGTATTTCGAAGAAATGACGTTAAGTGAATCTACAAAAAAAGTGGACATCCGGACAAACAGAAACTGTTGATGTCCAAAATCTAGGGAGATTTGATAAGTAAGAAATTGAGCAAGGCGCATAGCAAGCCGCATAAAAATTCATTTATCTTACTGACAAGAAAACTCAAAAAATTATCTTTTGAACGCAAAAACAATCTAATTCCTAGGACTATTTTGAGTCGAGTTACTGAAGTTATAGAGCGAGAGACGCAGTGTGTMTCGTTTCTCTGCGTATCTCACCTCAAAACTTTAAATGACTGTAACTCGGCTCAAAATCATGCTCCTAGCTCAATTTTGAACGGGTTTGGCATAAATTTTTTTTTCTACTTTTTGTTGATATTTTAAAAAAATAAACAACTTTTAAAACCAATTTTCGATTTTTTGCGGGCTGATGTGGGATTCCTTGATTTCTTTCGAACTTTAATCTCCTCCCTCTTTTTTGCCTAATTTGAATACCTAAACATACAGGAAACAGATGTCCTTCACTGAAACTAATTCTTTGCAGAGCACAAAAAAAACACAGAATAAAGAAACGGACGCGGGGCACAAATAGTGCATAATTGATGGGAGAAAATGTAGGGACGGACACTGGATAAAAAAGTGGATTACAATGGTATATCATTAGTAACGTTTTGAATCTGAAATTCCAAAAAAAAGAAGGTTGGATAAGATCTGGATGATCCTATTTACTTGAGCTAAAAAAAATAGGGGAAATTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTACTGACAAGAAAACTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATCGAAAATTGGTTTTAAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>TCTTACTGACAAGAAAACTCAAAAAATTATCTTTTGAACGCAAAAACAATCTAATTCCTAGGACTATTTTGAGTCGAGTTACTGAAGTTATAGAGCGAGAGACGCAGTGTGTCTCGTTTCTCTGCGTATCTCACCTCAAAACTTTAAATGACTGTAACTCGGCTCAAAATCATGCTCCTAGCTCAATTTTGAACGGGTTTGGCATAAATTTTTTTTTCTACTTTTTGTTGATATTTTAAAAAAATAAACAACTTTTAAAACCAATTTTCGAT</canonical_amplicon>
		<polymorphic_amplicon>TCTTACTGACAAGAAAACTCAAAAAATTATCTTTTGAACGCAAAAACAATCTAATTCCTAGGACTATTTTGAGTCGAGTTACTGAAGTTATAGAGCGAGAGACGCAGTGTGTMTCGTTTCTCTGCGTATCTCACCTCAAAACTTTAAATGACTGTAACTCGGCTCAAAATCATGCTCCTAGCTCAATTTTGAACGGGTTTGGCATAAATTTTTTTTTCTACTTTTTGTTGATATTTTAAAAAAATAAACAACTTTTAAAACCAATTTTCGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28649</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>231956</contig_pos>
        <strand></strand>
        <context>CCAAGTTTAC[A/G]TGGTTCAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTAC</left_flank>
        <right_flank>TGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGA</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTAGTGAAAACAACAACAAAAATTGTAAACAACTCATCAATAAATGTCATCTCGGATCTTAAAAAACCGGAGAAGCAGAATCTATTACGTACTGAAAAATGAGACTAATTTGAAGGAAAATGTGGAGAAGATGTGTCCGTAATAACCGTCGAACATACGTCACTCTACTCGTTTTTAGATTAAGAAGAGGAAATGAAAAGCGACGACTTCTGTAGTTGAAGAATCCGGGAAGAGAGTTCTGGAAGGTTCAAGTAACTTCCGACTAAAACACATTTTTTGAAACTGCCAAACAATTTTTTGACATTTTCAAGTTTGAAAGGTTCTTCTAAATAATATTTGGCTTCATAAAAAGAGAAAAGTTCACTCATAAAAAGTTTGGCAGAGTGCCAAAACTAAATAAATGAAACTTGCAATATATATGAATATTGTTGCGATAGAAGAACAAAAAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTACATGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGAGCTTTCTGAAGCTTAACAGGAACATGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAAAACAACTATTATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCACCCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAATCTTTGTGCCCTAATTGA</canonical>
            <polymorphic>CTTTTAGTGAAAACAACAACAAAAATTGTAAACAACTCATCAATAAATGTCATCTCGGATCTTAAAAAACCGGAGAAGCAGAATCTATTACGTACTGAAAAATGAGACTAATTTGAAGGAAAATGTGGAGAAGATGTGTCCGTAATAACCGTCGAACATACGTCACTCTACTCGTTTTTAGATTAAGAAGAGGAAATGAAAAGCGACGACTTCTGTAGTTGAAGAATCCGGGAAGAGAGTTCTGGAAGGTTCAAGTAACTTCCGACTAAAACACATTTTTTGAAACTGCCAAACAATTTTTTGACATTTTCAAGTTTGAAAGGTTCTTCTAAATAATATTTGGCTTCATAAAAAGAGAAAAGTTCACTCATAAAAAGTTTGGCAGAGTGCCAAAACTAAATAAATGAAACTTGCAATATATATGAATATTGTTGCGATAGAAGAACAAAAAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTACRTGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGAGCTTTCTGAAGCTTAACAGGAACATGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAAAACAACTATTATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCACCCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAATCTTTGTGCCCTAATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>462 231 196 74 37</canonical_bands>
                <polymorphic_bands>462 231 196 111</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAGTTTGAAAGGTTCTTCTAA</pcr_primer_p1>
		<pcr_primer_p2>AAGCTCTCGAAGAGAAAACTTTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TCAAGTTTGAAAGGTTCTTCTAAATAATATTTGGCTTCATAAAAAGAGAAAAGTTCACTCATAAAAAGTTTGGCAGAGTGCCAAAACTAAATAAATGAAACTTGCAATATATATGAATATTGTTGCGATAGAAGAACAAAAAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTACATGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGAGCTT</canonical_amplicon>
		<polymorphic_amplicon>TCAAGTTTGAAAGGTTCTTCTAAATAATATTTGGCTTCATAAAAAGAGAAAAGTTCACTCATAAAAAGTTTGGCAGAGTGCCAAAACTAAATAAATGAAACTTGCAATATATATGAATATTGTTGCGATAGAAGAACAAAAAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTACRTGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28650</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>232030</contig_pos>
        <strand>+</strand>
        <context>TAACAGGAAY[C/T]TGTCTACTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATGGTTTAAAGTTTTCTCTTCGAGAGCTTTCTGAAGCTTAACAGGAAC</left_flank>
        <right_flank>TGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGCAGAATCTATTACGTACTGAAAAATGAGACTAATTTGAAGGAAAATGTGGAGAAGATGTGTCCGTAATAACCGTCGAACATACGTCACTCTACTCGTTTTTAGATTAAGAAGAGGAAATGAAAAGCGACGACTTCTGTAGTTGAAGAATCCGGGAAGAGAGTTCTGGAAGGTTCAAGTAACTTCCGACTAAAACACATTTTTTGAAACTGCCAAACAATTTTTTGACATTTTCAAGTTTGAAAGGTTCTTCTAAATAATATTTGGCTTCATAAAAAGAGAAAAGTTCACTCATAAAAAGTTTGGCAGAGTGCCAAAACTAAATAAATGAAACTTGCAATATATATGAATATTGTTGCGATAGAAGAACAAAAAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTACATGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGAGCTTTCTGAAGCTTAACAGGAACATGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAAAACAACTATTATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCACCCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAATCTTTGTGCCCTAATTGAATACACTTGCTTGTTTTCTTCTCGTCACCTTTCAAATCCATTGTTTTTTATTCCCCTAAAATGATTCATTTCCC</canonical>
            <polymorphic>GAAGCAGAATCTATTACGTACTGAAAAATGAGACTAATTTGAAGGAAAATGTGGAGAAGATGTGTCCGTAATAACCGTCGAACATACGTCACTCTACTCGTTTTTAGATTAAGAAGAGGAAATGAAAAGCGACGACTTCTGTAGTTGAAGAATCCGGGAAGAGAGTTCTGGAAGGTTCAAGTAACTTCCGACTAAAACACATTTTTTGAAACTGCCAAACAATTTTTTGACATTTTCAAGTTTGAAAGGTTCTTCTAAATAATATTTGGCTTCATAAAAAGAGAAAAGTTCACTCATAAAAAGTTTGGCAGAGTGCCAAAACTAAATAAATGAAACTTGCAATATATATGAATATTGTTGCGATAGAAGAACAAAAAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTACATGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGAGCTTTCTGAAGCTTAACAGGAACYTGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAAAACAACTATTATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCACCCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAATCTTTGTGCCCTAATTGAATACACTTGCTTGTTTTCTTCTCGTCACCTTTCAAATCCATTGTTTTTTATTCCCCTAAAATGATTCATTTCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>498 271 231</canonical_bands>
                <polymorphic_bands>729 271</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>498 271 231</canonical_bands>
                <polymorphic_bands>729 271</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>502 267 231</canonical_bands>
                <polymorphic_bands>733 267</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>388 270 231 74 37</canonical_bands>
                <polymorphic_bands>388 305 270 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCCAAAACTAAATAAATGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TGAAATCGAAAATGGAATACTAA</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TGCCAAAACTAAATAAATGAAACTTGCAATATATATGAATATTGTTGCGATAGAAGAACAAAAAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTACATGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGAGCTTTCTGAAGCTTAACAGGAACATGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCA</canonical_amplicon>
		<polymorphic_amplicon>TGCCAAAACTAAATAAATGAAACTTGCAATATATATGAATATTGTTGCGATAGAAGAACAAAAAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTACATGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGAGCTTTCTGAAGCTTAACAGGAACYTGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28651</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>232107</contig_pos>
        <strand>+</strand>
        <context>TTCAGAAGTG[C/T]CTGAAGCTYA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTG</left_flank>
        <right_flank>CTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAAT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAACATACGTCACTCTACTCGTTTTTAGATTAAGAAGAGGAAATGAAAAGCGACGACTTCTGTAGTTGAAGAATCCGGGAAGAGAGTTCTGGAAGGTTCAAGTAACTTCCGACTAAAACACATTTTTTGAAACTGCCAAACAATTTTTTGACATTTTCAAGTTTGAAAGGTTCTTCTAAATAATATTTGGCTTCATAAAAAGAGAAAAGTTCACTCATAAAAAGTTTGGCAGAGTGCCAAAACTAAATAAATGAAACTTGCAATATATATGAATATTGTTGCGATAGAAGAACAAAAAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTACATGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGAGCTTTCTGAAGCTTAACAGGAACATGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAAAACAACTATTATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCACCCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAATCTTTGTGCCCTAATTGAATACACTTGCTTGTTTTCTTCTCGTCACCTTTCAAATCCATTGTTTTTTATTCCCCTAAAATGATTCATTTCCCAGAGAAGACCAGTGAGCAGAAAGTGACTCTAAACTACACAGCAATGTGTCACAAGTCATACGAAAAAAGTGGACAAA</canonical>
            <polymorphic>TCGAACATACGTCACTCTACTCGTTTTTAGATTAAGAAGAGGAAATGAAAAGCGACGACTTCTGTAGTTGAAGAATCCGGGAAGAGAGTTCTGGAAGGTTCAAGTAACTTCCGACTAAAACACATTTTTTGAAACTGCCAAACAATTTTTTGACATTTTCAAGTTTGAAAGGTTCTTCTAAATAATATTTGGCTTCATAAAAAGAGAAAAGTTCACTCATAAAAAGTTTGGCAGAGTGCCAAAACTAAATAAATGAAACTTGCAATATATATGAATATTGTTGCGATAGAAGAACAAAAAAGATGTGTATCATGTTACAGAAAAGAAAATGATGTGATCCAAGTTTACATGGTTCAAAAAGTTTTTCTGGAGAAATGGTTTAAAGTTTTCTCTTCGAGAGCTTTCTGAAGCTTAACAGGAACATGTCTACTAAAACTTCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGYCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCACTAACAAAAAACAACTATTATATTTGAGCTCTTTACAAAATAAAACCGAAAAAAACAACCTAGTGTCCACCCAGAAAATATTTTTGATTATTCACCCGTTTTTTTCCCAAGTGTCCACCACCTTTCTCTTAATGAGTTGACTCAATCTTTGTGCCCTAATTGAATACACTTGCTTGTTTTCTTCTCGTCACCTTTCAAATCCATTGTTTTTTATTCCCCTAAAATGATTCATTTCCCAGAGAAGACCAGTGAGCAGAAAGTGACTCTAAACTACACAGCAATGTGTCACAAGTCATACGAAAAAAGTGGACAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>498 294 112 87 9</canonical_bands>
                <polymorphic_bands>507 294 112 87</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTCCTTTTGCAATTAAGAT</pcr_primer_p1>
		<pcr_primer_p2>TGAGCTTAGCAGTTAGATAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGTCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCA</canonical_amplicon>
		<polymorphic_amplicon>TCCTCCTTTTGCAATTAAGATGAAAAAATGGAATTAGTATTCCATTTTCGATTTCAGAAGTGYCTGAAGCTTACAATGAATGGAAGAAAAGTCACGAAGCCAGTCTGGAAAATGGCTAAGGAAACTTTAAAAAAAAATTAAGACTTCCATAAAATCTCTAGTACCATAAAACCTGTATAAGAAGGGCCCTCTAGCTTTGAACTTTTAGCCAAAAACATGTTTAAACATTTTATCTAACTGCTAAGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28652</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>239339</contig_pos>
        <strand>+</strand>
        <context>TTTTCGGTAT[G/T]TTTTCCGATA</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGCCTTTAAAGCTTCTAGATTTTCGGAAATTTTTCGACAATTTTCGGTAT</left_flank>
        <right_flank>TTTTCCGATAAAAAAAACGAAAAAAAAACTAAAAACGATGAAATGGTAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGAAAACCATAATAGAGAAAAGTGGTTTTCTATTATTTGAAACCGAGGGAGTGTGTGATTCGAGGAGAGTGCAGAGAGAGAGAGGAGGTAAACAGAACAGAGACCGGTGGAAAATGGTGTTCATCCGAATTTGTCTCTCTTTTTCCGAATTTTTTTCGATTTTTTCATGTTCTTTTTACATTGATTTTTCAAATCGAAAAAATTCAAATATCCCGCAAGATCGCTGGAAATTTGCAGTCTCACTTTCTTGCCATTTCATTCTCCCTTCGTCTCGCATACGAAATTCGCCCATCTAGTTTTTTTTTCAATGGTTTTTCTTTTCCGCTGACTTTCCATTTTTCCCGAACAGATGGCTTCTCTAATCTGGCGTAAAACGGCGCCGTTTCTCGCATACCTAATGAATTGGGGGAGGATTTTCAATTCAGAATTAGGTCTAGATATTCTATGCGCCTTTAAAGCTTCTAGATTTTCGGAAATTTTTCGACAATTTTCGGTATCTTTTCCGATAAAAAAAACGAAAAAAAAACTAAAAACGATGAAATGGTAAACTGTCTAAATTCGAGAAATTTCGACTAAAAATCATTATTTTGAGAAATCTCAAAATTAATGGAATATTCCGATTTTGAAAAGTTAGGCATTTCGGATTTTGAAAATTGCAAAATTTTGGAAATATTCTGATTTTTTAAAATTTTAGAAAATTGCGATTTTGAAATTTTTAGAATTTCTGGGACTTTGGATTTTTTAAAGAATTTGTTAACATGCCCATTTACAAAATTTCCAAATTTCGGAATATTCCTATTTTCAAATTTCGAAGTTTTTGAATTTCAGAATATTCCAGTTTGGAAAGTTTCAGAATTCCAGAATTTCGGAATATTCTGATTTACAAACTTTCAGAATTTCGGAATATTTCAGTTTTGAAAATTTCAGTATATTCTGATTTTGAAAACTCCAGAATCTCGAAAATTTCGGATTTTCATTTTCCGAATGTCGCATTTTCA</canonical>
            <polymorphic>AGTGAAAACCATAATAGAGAAAAGTGGTTTTCTATTATTTGAAACCGAGGGAGTGTGTGATTCGAGGAGAGTGCAGAGAGAGAGAGGAGGTAAACAGAACAGAGACCGGTGGAAAATGGTGTTCATCCGAATTTGTCTCTCTTTTTCCGAATTTTTTTCGATTTTTTCATGTTCTTTTTACATTGATTTTTCAAATCGAAAAAATTCAAATATCCCGCAAGATCGCTGGAAATTTGCAGTCTCACTTTCTTGCCATTTCATTCTCCCTTCGTCTCGCATACGAAATTCGCCCATCTAGTTTTTTTTTCAATGGTTTTTCTTTTCCGCTGACTTTCCATTTTTCCCGAACAGATGGCTTCTCTAATCTGGCGTAAAACGGCGCCGTTTCTCGCATACCTAATGAATTGGGGGAGGATTTTCAATTCAGAATTAGGTCTAGATATTCTATGCGCCTTTAAAGCTTCTAGATTTTCGGAAATTTTTCGACAATTTTCGGTATKTTTTCCGATAAAAAAAACGAAAAAAAAACTAAAAACGATGAAATGGTAAACTGTCTAAATTCGAGAAATTTCGACTAAAAATCATTATTTTGAGAAATCTCAAAATTAATGGAATATTCCGATTTTGAAAAGTTAGGCATTTCGGATTTTGAAAATTGCAAAATTTTGGAAATATTCTGATTTTTTAAAATTTTAGAAAATTGCGATTTTGAAATTTTTAGAATTTCTGGGACTTTGGATTTTTTAAAGAATTTGTTAACATGCCCATTTACAAAATTTCCAAATTTCGGAATATTCCTATTTTCAAATTTCGAAGTTTTTGAATTTCAGAATATTCCAGTTTGGAAAGTTTCAGAATTCCAGAATTTCGGAATATTCTGATTTACAAACTTTCAGAATTTCGGAATATTTCAGTTTTGAAAATTTCAGTATATTCTGATTTTGAAAACTCCAGAATCTCGAAAATTTCGGATTTTCATTTTCCGAATGTCGCATTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCAATGGTTTTTCTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CAGTTTACCATTTCATCGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCAATGGTTTTTCTTTTCCGCTGACTTTCCATTTTTCCCGAACAGATGGCTTCTCTAATCTGGCGTAAAACGGCGCCGTTTCTCGCATACCTAATGAATTGGGGGAGGATTTTCAATTCAGAATTAGGTCTAGATATTCTATGCGCCTTTAAAGCTTCTAGATTTTCGGAAATTTTTCGACAATTTTCGGTATCTTTTCCGATAAAAAAAACGAAAAAAAAACTAAAAACGATGAAATGGTAAACTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCAATGGTTTTTCTTTTCCGCTGACTTTCCATTTTTCCCGAACAGATGGCTTCTCTAATCTGGCGTAAAACGGCGCCGTTTCTCGCATACCTAATGAATTGGGGGAGGATTTTCAATTCAGAATTAGGTCTAGATATTCTATGCGCCTTTAAAGCTTCTAGATTTTCGGAAATTTTTCGACAATTTTCGGTATKTTTTCCGATAAAAAAAACGAAAAAAAAACTAAAAACGATGAAATGGTAAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28653</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>268695</contig_pos>
        <strand>+</strand>
        <context>ATGAGTTCAG[A/G]CTCTTCTCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATATCATAGATATTTTTACTTATAGAATACAGAGCCCAATGAGTTCAG</left_flank>
        <right_flank>CTCTTCTCACCTTCTAATCAGCTCAATTTTCCTAAAACCCACTCATTCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTATAGAAGATATCGAAAAATCTTCAACTGATAAACTGCTCTTCATAATATCAGTAACTTTTATTCATTTGACACAATTTTGCTATCTTTCATAGAAATTGAGTTAATTGGAGTTAAAGTTAATGGCTTGGGTGGGCCTCTATTCGAGGAAATACGGTATATACGCTTTTCCTATTTCTGGAATAATTTCTAATCAAAAAATTCCTAAAACCCGGAGTTTCTAAAAATACCCTGAAAAATGGAAATCTCTGAATAAGCAGAACTGACGAACTTTTTCAAAAGAGCCGCATTTTTATAGGCAACTATTCCCAGAATGCTAATCTATAGAATTCTAGACGCGGTTCCAGTTCTAACACCTTTAACAATGTACGCTGATTTTCAGATGTTTCTGCACCCCGTTAAAGAATAATGTTTGAGTTCTAGACAAGCCTAAAAAGATCATCAAAATGATATCATAGATATTTTTACTTATAGAATACAGAGCCCAATGAGTTCAGGCTCTTCTCACCTTCTAATCAGCTCAATTTTCCTAAAACCCACTCATTCTGATTCATATTCTGAAACTAGAAAATCGAAACGATATGAATGAAGAGAAGAAATAGTGAAACACTTTCGTTCCCACTTATCTGGAATGTTTTTTGAAGTCTTCGGAATAGAAAAGAAGGAAAGAAGAAGCTGGGCGACACTTGATAGTTCAAGAGGATTATAGAAGATTCTGTTCTTTGCGGAGATTCTAGAATTCACAAAATCTTTTAGCAAAAATAGAAATAATGACCAAAGGGAGAAAACCAACCCAAGCTTGAGCTAAATGTGATCTAGTTCTCTAGAAGACCAAAAAACTAAGTCAAGATTGGTTAGACCCTCTCTTTCTTTCTCTCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCCCCGCCAAATCGAATGAGCAGATCTAGCGGATCAAAAAGGTGGAGTATCCCCTTTTCCACTCCGGAGAAGCAGTAA</canonical>
            <polymorphic>TTCTATAGAAGATATCGAAAAATCTTCAACTGATAAACTGCTCTTCATAATATCAGTAACTTTTATTCATTTGACACAATTTTGCTATCTTTCATAGAAATTGAGTTAATTGGAGTTAAAGTTAATGGCTTGGGTGGGCCTCTATTCGAGGAAATACGGTATATACGCTTTTCCTATTTCTGGAATAATTTCTAATCAAAAAATTCCTAAAACCCGGAGTTTCTAAAAATACCCTGAAAAATGGAAATCTCTGAATAAGCAGAACTGACGAACTTTTTCAAAAGAGCCGCATTTTTATAGGCAACTATTCCCAGAATGCTAATCTATAGAATTCTAGACGCGGTTCCAGTTCTAACACCTTTAACAATGTACGCTGATTTTCAGATGTTTCTGCACCCCGTTAAAGAATAATGTTTGAGTTCTAGACAAGCCTAAAAAGATCATCAAAATGATATCATAGATATTTTTACTTATAGAATACAGAGCCCAATGAGTTCAGRCTCTTCTCACCTTCTAATCAGCTCAATTTTCCTAAAACCCACTCATTCTGATTCATATTCTGAAACTAGAAAATCGAAACGATATGAATGAAGAGAAGAAATAGTGAAACACTTTCGTTCCCACTTATCTGGAATGTTTTTTGAAGTCTTCGGAATAGAAAAGAAGGAAAGAAGAAGCTGGGCGACACTTGATAGTTCAAGAGGATTATAGAAGATTCTGTTCTTTGCGGAGATTCTAGAATTCACAAAATCTTTTAGCAAAAATAGAAATAATGACCAAAGGGAGAAAACCAACCCAAGCTTGAGCTAAATGTGATCTAGTTCTCTAGAAGACCAAAAAACTAAGTCAAGATTGGTTAGACCCTCTCTTTCTTTCTCTCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCCCCGCCAAATCGAATGAGCAGATCTAGCGGATCAAAAAGGTGGAGTATCCCCTTTTCCACTCCGGAGAAGCAGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>194 156 148 144 128 123 55 21 15 10 6</canonical_bands>
                <polymorphic_bands>194 156 148 144 128 123 55 36 10 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCCTAAAAAGATCATCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GCTTCTTCTTTCCTTCTTTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAGCCTAAAAAGATCATCAAAATGATATCATAGATATTTTTACTTATAGAATACAGAGCCCAATGAGTTCAGGCTCTTCTCACCTTCTAATCAGCTCAATTTTCCTAAAACCCACTCATTCTGATTCATATTCTGAAACTAGAAAATCGAAACGATATGAATGAAGAGAAGAAATAGTGAAACACTTTCGTTCCCACTTATCTGGAATGTTTTTTGAAGTCTTCGGAATAGAAAAGAAGGAAAGAAGAAGC</canonical_amplicon>
		<polymorphic_amplicon>AAGCCTAAAAAGATCATCAAAATGATATCATAGATATTTTTACTTATAGAATACAGAGCCCAATGAGTTCAGRCTCTTCTCACCTTCTAATCAGCTCAATTTTCCTAAAACCCACTCATTCTGATTCATATTCTGAAACTAGAAAATCGAAACGATATGAATGAAGAGAAGAAATAGTGAAACACTTTCGTTCCCACTTATCTGGAATGTTTTTTGAAGTCTTCGGAATAGAAAAGAAGGAAAGAAGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28654</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>282369</contig_pos>
        <strand>+</strand>
        <context>AARCCAAAAA[A/G]GGTACTGTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGAAATTAAAATTTCTTAAAAATCACATCAAAACTAAAAAGCCAAAAA</left_flank>
        <right_flank>GGTACTGTAGCTCGAAAAATATCATCGTATTTGCTCTGATAAAAGCCCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGCAGAACATGATACCCTTTGACGGACTGGAACGCCGGATGGTATGCTCCAGAAAACATCTGAAGAATTAATTGGAATTTAAATGCAAGATTCGGAAACCTACAGTAGTACAAAACTCATCATCAAGTTGCACCGCGTAGTTGTACATGACAGGACACCCGGATGGTGAATTCTTCAAATAACAATTGGAAGAAGAAGAGTAAAAATTTGGAAATTCAATTAGTCGGTCAAAATGGCGTCAGCAATGAAAAGTGAACAAAAGGACAACAATTTGGAGAAGTAGAAGAAGGAGGAGGGACATAAAAAAGTACACATTTCTAATTGACATGGGACACTTGTCACATTTTTGACAAAGATGAAAAATATTGGCAGGAAAAGTATATTTGGATAGTTTGAGGACAGTGCAATGGGATCAGTGGTCAGTATGGGATTTAGAAAGATCAGAAGTTTGAAATTAAAATTTCTTAAAAATCACATCAAAACTAAAAAGCCAAAAAAGGTACTGTAGCTCGAAAAATATCATCGTATTTGCTCTGATAAAAGCCCATCGTATACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAATTTTGCCAACTAATAAAAGATTGGTGATATTTTGATAAACAATTTATCAGTTGACCACTTTTTGATATCTTTTATAGAAATCGAGATAATTGATCTCAAAGTTAACAGTTTGAATAGGTTCATATAAAATTCTCACAAATTAGAATGGTCACTTAAAGCTTGGGGTACTGTAGTTGTGCAATAAAGCGGCTTAAACCCTGCCGCCGCTATTCCTCAAATAACAAACCGTCTACTTGATGATCAGAATCCAGGAAATTTGAATTAAATGTATCTGGATCCCTGTAAAAGATTTAACAATGATACTATCAACTGATAAAATATTGTTGGTATTATGATAAAAATTTTTGTTAGATTCGCAAAGGAATGTGTATGAAAATTGAATTTCCAACTAAACCCACTAGA</canonical>
            <polymorphic>ATAGCAGAACATGATACCCTTTGACGGACTGGAACGCCGGATGGTATGCTCCAGAAAACATCTGAAGAATTAATTGGAATTTAAATGCAAGATTCGGAAACCTACAGTAGTACAAAACTCATCATCAAGTTGCACCGCGTAGTTGTACATGACAGGACACCCGGATGGTGAATTCTTCAAATAACAATTGGAAGAAGAAGAGTAAAAATTTGGAAATTCAATTAGTCGGTCAAAATGGCGTCAGCAATGAAAAGTGAACAAAAGGACAACAATTTGGAGAAGTAGAAGAAGGAGGAGGGACATAAAAAAGTACACATTTCTAATTGACATGGGACACTTGTCACATTTTTGACAAAGATGAAAAATATTGGCAGGAAAAGTATATTTGGATAGTTTGAGGACAGTGCAATGGGATCAGTGGTCAGTATGGGATTTAGAAAGATCAGAAGTTTGAAATTAAAATTTCTTAAAAATCACATCAAAACTAAAAAGCCAAAAARGGTACTGTAGCTCGAAAAATATCATCGTATTTGCTCTGATAAAAGCCCATCGTATACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAATTTTGCCAACTAATAAAAGATTGGTGATATTTTGATAAACAATTTATCAGTTGACCACTTTTTGATATCTTTTATAGAAATCGAGATAATTGATCTCAAAGTTAACAGTTTGAATAGGTTCATATAAAATTCTCACAAATTAGAATGGTCACTTAAAGCTTGGGGTACTGTAGTTGTGCAATAAAGCGGCTTAAACCCTGCCGCCGCTATTCCTCAAATAACAAACCGTCTACTTGATGATCAGAATCCAGGAAATTTGAATTAAATGTATCTGGATCCCTGTAAAAGATTTAACAATGATACTATCAACTGATAAAATATTGTTGGTATTATGATAAAAATTTTTGTTAGATTCGCAAAGGAATGTGTATGAAAATTGAATTTCCAACTAAACCCACTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCTAATTGACATGGGACAC</pcr_primer_p1>
		<pcr_primer_p2>TACGATGGGCTTTTATCAGA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ATTTCTAATTGACATGGGACACTTGTCACATTTTTGACAAAGATGAAAAATATTGGCAGGAAAAGTATATTTGGATAGTTTGAGGACAGTGCAATGGGATCAGTGGTCAGTATGGGATTTAGAAAGATCAGAAGTTTGAAATTAAAATTTCTTAAAAATCACATCAAAACTAAAAAGCCAAAAAAGGTACTGTAGCTCGAAAAATATCATCGTATTTGCTCTGATAAAAGCCCATCGTA</canonical_amplicon>
		<polymorphic_amplicon>ATTTCTAATTGACATGGGACACTTGTCACATTTTTGACAAAGATGAAAAATATTGGCAGGAAAAGTATATTTGGATAGTTTGAGGACAGTGCAATGGGATCAGTGGTCAGTATGGGATTTAGAAAGATCAGAAGTTTGAAATTAAAATTTCTTAAAAATCACATCAAAACTAAAAAGCCAAAAARGGTACTGTAGCTCGAAAAATATCATCGTATTTGCTCTGATAAAAGCCCATCGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28655</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>282515</contig_pos>
        <strand></strand>
        <context>aacaatttat[C/T]agttgaccac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTTTGCCAACTAATAAAAGATTGGTGATATTTTGATAAACAATTTAT</left_flank>
        <right_flank>AGTTGACCACTTTTTGATATCTTTTATAGAAATCGAGATAATTGATCTCA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATGACAGGACACCCGGATGGTGAATTCTTCAAATAACAATTGGAAGAAGAAGAGTAAAAATTTGGAAATTCAATTAGTCGGTCAAAATGGCGTCAGCAATGAAAAGTGAACAAAAGGACAACAATTTGGAGAAGTAGAAGAAGGAGGAGGGACATAAAAAAGTACACATTTCTAATTGACATGGGACACTTGTCACATTTTTGACAAAGATGAAAAATATTGGCAGGAAAAGTATATTTGGATAGTTTGAGGACAGTGCAATGGGATCAGTGGTCAGTATGGGATTTAGAAAGATCAGAAGTTTGAAATTAAAATTTCTTAAAAATCACATCAAAACTAAAAAGCCAAAAAAGGTACTGTAGCTCGAAAAATATCATCGTATTTGCTCTGATAAAAGCCCATCGTATACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAATTTTGCCAACTAATAAAAGATTGGTGATATTTTGATAAACAATTTATCAGTTGACCACTTTTTGATATCTTTTATAGAAATCGAGATAATTGATCTCAAAGTTAACAGTTTGAATAGGTTCATATAAAATTCTCACAAATTAGAATGGTCACTTAAAGCTTGGGGTACTGTAGTTGTGCAATAAAGCGGCTTAAACCCTGCCGCCGCTATTCCTCAAATAACAAACCGTCTACTTGATGATCAGAATCCAGGAAATTTGAATTAAATGTATCTGGATCCCTGTAAAAGATTTAACAATGATACTATCAACTGATAAAATATTGTTGGTATTATGATAAAAATTTTTGTTAGATTCGCAAAGGAATGTGTATGAAAATTGAATTTCCAACTAAACCCACTAGAAATCAACTTTCTAGAATTTCTTTAACTAACCGAAAAACTTCAAACAAGCGTAACTCGGCTCACAATGGGCGTAGAGAGCGGTTTTTAGCGAATTTTTAAGGAAATTTTGTGCATTATCTTTTGGGAAAACTTGCAAAAAAAAAATT</canonical>
            <polymorphic>ACATGACAGGACACCCGGATGGTGAATTCTTCAAATAACAATTGGAAGAAGAAGAGTAAAAATTTGGAAATTCAATTAGTCGGTCAAAATGGCGTCAGCAATGAAAAGTGAACAAAAGGACAACAATTTGGAGAAGTAGAAGAAGGAGGAGGGACATAAAAAAGTACACATTTCTAATTGACATGGGACACTTGTCACATTTTTGACAAAGATGAAAAATATTGGCAGGAAAAGTATATTTGGATAGTTTGAGGACAGTGCAATGGGATCAGTGGTCAGTATGGGATTTAGAAAGATCAGAAGTTTGAAATTAAAATTTCTTAAAAATCACATCAAAACTAAAAAGCCAAAAAAGGTACTGTAGCTCGAAAAATATCATCGTATTTGCTCTGATAAAAGCCCATCGTATACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAATTTTGCCAACTAATAAAAGATTGGTGATATTTTGATAAACAATTTATYAGTTGACCACTTTTTGATATCTTTTATAGAAATCGAGATAATTGATCTCAAAGTTAACAGTTTGAATAGGTTCATATAAAATTCTCACAAATTAGAATGGTCACTTAAAGCTTGGGGTACTGTAGTTGTGCAATAAAGCGGCTTAAACCCTGCCGCCGCTATTCCTCAAATAACAAACCGTCTACTTGATGATCAGAATCCAGGAAATTTGAATTAAATGTATCTGGATCCCTGTAAAAGATTTAACAATGATACTATCAACTGATAAAATATTGTTGGTATTATGATAAAAATTTTTGTTAGATTCGCAAAGGAATGTGTATGAAAATTGAATTTCCAACTAAACCCACTAGAAATCAACTTTCTAGAATTTCTTTAACTAACCGAAAAACTTCAAACAAGCGTAACTCGGCTCACAATGGGCGTAGAGAGCGGTTTTTAGCGAATTTTTAAGGAAATTTTGTGCATTATCTTTTGGGAAAACTTGCAAAAAAAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGATAAAAGCCCATCGTA</pcr_primer_p1>
		<pcr_primer_p2>AACTACAGTACCCCAAGCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TCTGATAAAAGCCCATCGTATACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAATTTTGCCAACTAATAAAAGATTGGTGATATTTTGATAAACAATTTATCAGTTGACCACTTTTTGATATCTTTTATAGAAATCGAGATAATTGATCTCAAAGTTAACAGTTTGAATAGGTTCATATAAAATTCTCACAAATTAGAATGGTCACTTAAAGCTTGGGGTACTGTAGTT</canonical_amplicon>
		<polymorphic_amplicon>TCTGATAAAAGCCCATCGTATACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAATTTTGCCAACTAATAAAAGATTGGTGATATTTTGATAAACAATTTATYAGTTGACCACTTTTTGATATCTTTTATAGAAATCGAGATAATTGATCTCAAAGTTAACAGTTTGAATAGGTTCATATAAAATTCTCACAAATTAGAATGGTCACTTAAAGCTTGGGGTACTGTAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28656</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>282564</contig_pos>
        <strand></strand>
        <context>taattgatct[C/T]aaagttaaca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGTTGACCACTTTTTGATATCTTTTATAGAAATCGAGATAATTGATCT</left_flank>
        <right_flank>AAAGTTAACAGTTTGAATAGGTTCATATAAAATTCTCACAAATTAGAATG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAGAGTAAAAATTTGGAAATTCAATTAGTCGGTCAAAATGGCGTCAGCAATGAAAAGTGAACAAAAGGACAACAATTTGGAGAAGTAGAAGAAGGAGGAGGGACATAAAAAAGTACACATTTCTAATTGACATGGGACACTTGTCACATTTTTGACAAAGATGAAAAATATTGGCAGGAAAAGTATATTTGGATAGTTTGAGGACAGTGCAATGGGATCAGTGGTCAGTATGGGATTTAGAAAGATCAGAAGTTTGAAATTAAAATTTCTTAAAAATCACATCAAAACTAAAAAGCCAAAAAAGGTACTGTAGCTCGAAAAATATCATCGTATTTGCTCTGATAAAAGCCCATCGTATACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAATTTTGCCAACTAATAAAAGATTGGTGATATTTTGATAAACAATTTATCAGTTGACCACTTTTTGATATCTTTTATAGAAATCGAGATAATTGATCTCAAAGTTAACAGTTTGAATAGGTTCATATAAAATTCTCACAAATTAGAATGGTCACTTAAAGCTTGGGGTACTGTAGTTGTGCAATAAAGCGGCTTAAACCCTGCCGCCGCTATTCCTCAAATAACAAACCGTCTACTTGATGATCAGAATCCAGGAAATTTGAATTAAATGTATCTGGATCCCTGTAAAAGATTTAACAATGATACTATCAACTGATAAAATATTGTTGGTATTATGATAAAAATTTTTGTTAGATTCGCAAAGGAATGTGTATGAAAATTGAATTTCCAACTAAACCCACTAGAAATCAACTTTCTAGAATTTCTTTAACTAACCGAAAAACTTCAAACAAGCGTAACTCGGCTCACAATGGGCGTAGAGAGCGGTTTTTAGCGAATTTTTAAGGAAATTTTGTGCATTATCTTTTGGGAAAACTTGCAAAAAAAAAATTTGGCTCGTAAAAACATAGTTTGCTATAGTTGAAATTATAGTTGAAATAG</canonical>
            <polymorphic>AGAAGAGTAAAAATTTGGAAATTCAATTAGTCGGTCAAAATGGCGTCAGCAATGAAAAGTGAACAAAAGGACAACAATTTGGAGAAGTAGAAGAAGGAGGAGGGACATAAAAAAGTACACATTTCTAATTGACATGGGACACTTGTCACATTTTTGACAAAGATGAAAAATATTGGCAGGAAAAGTATATTTGGATAGTTTGAGGACAGTGCAATGGGATCAGTGGTCAGTATGGGATTTAGAAAGATCAGAAGTTTGAAATTAAAATTTCTTAAAAATCACATCAAAACTAAAAAGCCAAAAAAGGTACTGTAGCTCGAAAAATATCATCGTATTTGCTCTGATAAAAGCCCATCGTATACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAATTTTGCCAACTAATAAAAGATTGGTGATATTTTGATAAACAATTTATCAGTTGACCACTTTTTGATATCTTTTATAGAAATCGAGATAATTGATCTYAAAGTTAACAGTTTGAATAGGTTCATATAAAATTCTCACAAATTAGAATGGTCACTTAAAGCTTGGGGTACTGTAGTTGTGCAATAAAGCGGCTTAAACCCTGCCGCCGCTATTCCTCAAATAACAAACCGTCTACTTGATGATCAGAATCCAGGAAATTTGAATTAAATGTATCTGGATCCCTGTAAAAGATTTAACAATGATACTATCAACTGATAAAATATTGTTGGTATTATGATAAAAATTTTTGTTAGATTCGCAAAGGAATGTGTATGAAAATTGAATTTCCAACTAAACCCACTAGAAATCAACTTTCTAGAATTTCTTTAACTAACCGAAAAACTTCAAACAAGCGTAACTCGGCTCACAATGGGCGTAGAGAGCGGTTTTTAGCGAATTTTTAAGGAAATTTTGTGCATTATCTTTTGGGAAAACTTGCAAAAAAAAAATTTGGCTCGTAAAAACATAGTTTGCTATAGTTGAAATTATAGTTGAAATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGATAAAAGCCCATCGTA</pcr_primer_p1>
		<pcr_primer_p2>AACTACAGTACCCCAAGCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TCTGATAAAAGCCCATCGTATACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAATTTTGCCAACTAATAAAAGATTGGTGATATTTTGATAAACAATTTATCAGTTGACCACTTTTTGATATCTTTTATAGAAATCGAGATAATTGATCTCAAAGTTAACAGTTTGAATAGGTTCATATAAAATTCTCACAAATTAGAATGGTCACTTAAAGCTTGGGGTACTGTAGTT</canonical_amplicon>
		<polymorphic_amplicon>TCTGATAAAAGCCCATCGTATACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAATTTTGCCAACTAATAAAAGATTGGTGATATTTTGATAAACAATTTATCAGTTGACCACTTTTTGATATCTTTTATAGAAATCGAGATAATTGATCTYAAAGTTAACAGTTTGAATAGGTTCATATAAAATTCTCACAAATTAGAATGGTCACTTAAAGCTTGGGGTACTGTAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28657</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>282719</contig_pos>
        <strand>+</strand>
        <context>CAGAATCCAG[C/G]aaatttgaat</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGCCGCTATTCCTCAAATAACAAACCGTCTACTTGATGATCAGAATCCAG</left_flank>
        <right_flank>AAATTTGAATTAAATGTATCTGGATCCCTGTAAAAGATTTAACAATGATA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACAAAGATGAAAAATATTGGCAGGAAAAGTATATTTGGATAGTTTGAGGACAGTGCAATGGGATCAGTGGTCAGTATGGGATTTAGAAAGATCAGAAGTTTGAAATTAAAATTTCTTAAAAATCACATCAAAACTAAAAAGCCAAAAAAGGTACTGTAGCTCGAAAAATATCATCGTATTTGCTCTGATAAAAGCCCATCGTATACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAATTTTGCCAACTAATAAAAGATTGGTGATATTTTGATAAACAATTTATCAGTTGACCACTTTTTGATATCTTTTATAGAAATCGAGATAATTGATCTCAAAGTTAACAGTTTGAATAGGTTCATATAAAATTCTCACAAATTAGAATGGTCACTTAAAGCTTGGGGTACTGTAGTTGTGCAATAAAGCGGCTTAAACCCTGCCGCCGCTATTCCTCAAATAACAAACCGTCTACTTGATGATCAGAATCCAGGAAATTTGAATTAAATGTATCTGGATCCCTGTAAAAGATTTAACAATGATACTATCAACTGATAAAATATTGTTGGTATTATGATAAAAATTTTTGTTAGATTCGCAAAGGAATGTGTATGAAAATTGAATTTCCAACTAAACCCACTAGAAATCAACTTTCTAGAATTTCTTTAACTAACCGAAAAACTTCAAACAAGCGTAACTCGGCTCACAATGGGCGTAGAGAGCGGTTTTTAGCGAATTTTTAAGGAAATTTTGTGCATTATCTTTTGGGAAAACTTGCAAAAAAAAAATTTGGCTCGTAAAAACATAGTTTGCTATAGTTGAAATTATAGTTGAAATAGTTGAATATAGTTGGAATAGTTGAAATTACAAAGATAAATGAGCTCAAACTAGATGCTATTAGGTTGCGAATTCCTTCCAACTTTAATCCGATTTATTTTATTTCCTGTGAAAGATATCAAAAATTTGTCAGCTGGTAAAATATTGTTGACATTAT</canonical>
            <polymorphic>GACAAAGATGAAAAATATTGGCAGGAAAAGTATATTTGGATAGTTTGAGGACAGTGCAATGGGATCAGTGGTCAGTATGGGATTTAGAAAGATCAGAAGTTTGAAATTAAAATTTCTTAAAAATCACATCAAAACTAAAAAGCCAAAAAAGGTACTGTAGCTCGAAAAATATCATCGTATTTGCTCTGATAAAAGCCCATCGTATACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAATTTTGCCAACTAATAAAAGATTGGTGATATTTTGATAAACAATTTATCAGTTGACCACTTTTTGATATCTTTTATAGAAATCGAGATAATTGATCTCAAAGTTAACAGTTTGAATAGGTTCATATAAAATTCTCACAAATTAGAATGGTCACTTAAAGCTTGGGGTACTGTAGTTGTGCAATAAAGCGGCTTAAACCCTGCCGCCGCTATTCCTCAAATAACAAACCGTCTACTTGATGATCAGAATCCAGSAAATTTGAATTAAATGTATCTGGATCCCTGTAAAAGATTTAACAATGATACTATCAACTGATAAAATATTGTTGGTATTATGATAAAAATTTTTGTTAGATTCGCAAAGGAATGTGTATGAAAATTGAATTTCCAACTAAACCCACTAGAAATCAACTTTCTAGAATTTCTTTAACTAACCGAAAAACTTCAAACAAGCGTAACTCGGCTCACAATGGGCGTAGAGAGCGGTTTTTAGCGAATTTTTAAGGAAATTTTGTGCATTATCTTTTGGGAAAACTTGCAAAAAAAAAATTTGGCTCGTAAAAACATAGTTTGCTATAGTTGAAATTATAGTTGAAATAGTTGAATATAGTTGGAATAGTTGAAATTACAAAGATAAATGAGCTCAAACTAGATGCTATTAGGTTGCGAATTCCTTCCAACTTTAATCCGATTTATTTTATTTCCTGTGAAAGATATCAAAAATTTGTCAGCTGGTAAAATATTGTTGACATTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAGCTTGGGGTACTGTAGTT</pcr_primer_p1>
		<pcr_primer_p2>TTCTAGTGGGTTTAGTTGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAAGCTTGGGGTACTGTAGTTGTGCAATAAAGCGGCTTAAACCCTGCCGCCGCTATTCCTCAAATAACAAACCGTCTACTTGATGATCAGAATCCAGGAAATTTGAATTAAATGTATCTGGATCCCTGTAAAAGATTTAACAATGATACTATCAACTGATAAAATATTGTTGGTATTATGATAAAAATTTTTGTTAGATTCGCAAAGGAATGTGTATGAAAATTGAATTTCCAACTAAACCCACTAGAA</canonical_amplicon>
		<polymorphic_amplicon>TAAAGCTTGGGGTACTGTAGTTGTGCAATAAAGCGGCTTAAACCCTGCCGCCGCTATTCCTCAAATAACAAACCGTCTACTTGATGATCAGAATCCAGSAAATTTGAATTAAATGTATCTGGATCCCTGTAAAAGATTTAACAATGATACTATCAACTGATAAAATATTGTTGGTATTATGATAAAAATTTTTGTTAGATTCGCAAAGGAATGTGTATGAAAATTGAATTTCCAACTAAACCCACTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28658</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>282791</contig_pos>
        <strand></strand>
        <context>taaaatattg[T/G]tggtattatg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GGATCCCTGTAAAAGATTTAACAATGATACTATCAACTGATAAAATATTG</left_flank>
        <right_flank>TGGTATTATGATAAAAATTTTTGTTAGATTCGCAAAGGAATGTGTATGAA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTATGGGATTTAGAAAGATCAGAAGTTTGAAATTAAAATTTCTTAAAAATCACATCAAAACTAAAAAGCCAAAAAAGGTACTGTAGCTCGAAAAATATCATCGTATTTGCTCTGATAAAAGCCCATCGTATACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAATTTTGCCAACTAATAAAAGATTGGTGATATTTTGATAAACAATTTATCAGTTGACCACTTTTTGATATCTTTTATAGAAATCGAGATAATTGATCTCAAAGTTAACAGTTTGAATAGGTTCATATAAAATTCTCACAAATTAGAATGGTCACTTAAAGCTTGGGGTACTGTAGTTGTGCAATAAAGCGGCTTAAACCCTGCCGCCGCTATTCCTCAAATAACAAACCGTCTACTTGATGATCAGAATCCAGGAAATTTGAATTAAATGTATCTGGATCCCTGTAAAAGATTTAACAATGATACTATCAACTGATAAAATATTGTTGGTATTATGATAAAAATTTTTGTTAGATTCGCAAAGGAATGTGTATGAAAATTGAATTTCCAACTAAACCCACTAGAAATCAACTTTCTAGAATTTCTTTAACTAACCGAAAAACTTCAAACAAGCGTAACTCGGCTCACAATGGGCGTAGAGAGCGGTTTTTAGCGAATTTTTAAGGAAATTTTGTGCATTATCTTTTGGGAAAACTTGCAAAAAAAAAATTTGGCTCGTAAAAACATAGTTTGCTATAGTTGAAATTATAGTTGAAATAGTTGAATATAGTTGGAATAGTTGAAATTACAAAGATAAATGAGCTCAAACTAGATGCTATTAGGTTGCGAATTCCTTCCAACTTTAATCCGATTTATTTTATTTCCTGTGAAAGATATCAAAAATTTGTCAGCTGGTAAAATATTGTTGACATTATGATAAACAATTTATCAGTTGGCAAAATTTTGATATCTTTCACAGAAACTTAGATAATTAAGTTCTAAGTTTA</canonical>
            <polymorphic>CAGTATGGGATTTAGAAAGATCAGAAGTTTGAAATTAAAATTTCTTAAAAATCACATCAAAACTAAAAAGCCAAAAAAGGTACTGTAGCTCGAAAAATATCATCGTATTTGCTCTGATAAAAGCCCATCGTATACTTTGAGCTCAATTATCTCGATTCCTGTAAAAGATATCAAAATTTTGCCAACTAATAAAAGATTGGTGATATTTTGATAAACAATTTATCAGTTGACCACTTTTTGATATCTTTTATAGAAATCGAGATAATTGATCTCAAAGTTAACAGTTTGAATAGGTTCATATAAAATTCTCACAAATTAGAATGGTCACTTAAAGCTTGGGGTACTGTAGTTGTGCAATAAAGCGGCTTAAACCCTGCCGCCGCTATTCCTCAAATAACAAACCGTCTACTTGATGATCAGAATCCAGGAAATTTGAATTAAATGTATCTGGATCCCTGTAAAAGATTTAACAATGATACTATCAACTGATAAAATATTGKTGGTATTATGATAAAAATTTTTGTTAGATTCGCAAAGGAATGTGTATGAAAATTGAATTTCCAACTAAACCCACTAGAAATCAACTTTCTAGAATTTCTTTAACTAACCGAAAAACTTCAAACAAGCGTAACTCGGCTCACAATGGGCGTAGAGAGCGGTTTTTAGCGAATTTTTAAGGAAATTTTGTGCATTATCTTTTGGGAAAACTTGCAAAAAAAAAATTTGGCTCGTAAAAACATAGTTTGCTATAGTTGAAATTATAGTTGAAATAGTTGAATATAGTTGGAATAGTTGAAATTACAAAGATAAATGAGCTCAAACTAGATGCTATTAGGTTGCGAATTCCTTCCAACTTTAATCCGATTTATTTTATTTCCTGTGAAAGATATCAAAAATTTGTCAGCTGGTAAAATATTGTTGACATTATGATAAACAATTTATCAGTTGGCAAAATTTTGATATCTTTCACAGAAACTTAGATAATTAAGTTCTAAGTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAGCTTGGGGTACTGTAGTT</pcr_primer_p1>
		<pcr_primer_p2>TTCTAGTGGGTTTAGTTGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAAGCTTGGGGTACTGTAGTTGTGCAATAAAGCGGCTTAAACCCTGCCGCCGCTATTCCTCAAATAACAAACCGTCTACTTGATGATCAGAATCCAGGAAATTTGAATTAAATGTATCTGGATCCCTGTAAAAGATTTAACAATGATACTATCAACTGATAAAATATTGTTGGTATTATGATAAAAATTTTTGTTAGATTCGCAAAGGAATGTGTATGAAAATTGAATTTCCAACTAAACCCACTAGAA</canonical_amplicon>
		<polymorphic_amplicon>TAAAGCTTGGGGTACTGTAGTTGTGCAATAAAGCGGCTTAAACCCTGCCGCCGCTATTCCTCAAATAACAAACCGTCTACTTGATGATCAGAATCCAGGAAATTTGAATTAAATGTATCTGGATCCCTGTAAAAGATTTAACAATGATACTATCAACTGATAAAATATTGKTGGTATTATGATAAAAATTTTTGTTAGATTCGCAAAGGAATGTGTATGAAAATTGAATTTCCAACTAAACCCACTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28659</snp_id>
        <super_contig>c004001206.Contig2</super_contig>
        <contig_pos>284141</contig_pos>
        <strand>+</strand>
        <context>ATGACTGTGA[C/T]TAGAATCTAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTTATCCAATCATTATAATTAAAATTACTCACTATTTTGATGACTGTGA</left_flank>
        <right_flank>TAGAATCTAGATTTCCAAAAAAAATAGTGATGTAATTACTCAAATAAAAG</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCTCGTTTCCTGTCGTTCTTGTAGAGTTTTCTTGACGAAGCTAGTTTACACTTTTGTGTGCTTTTTTTGGACCAGTTTGTCATTTAGACGGACAACTTTTTTGAGAATATAGATGAGAAGGAAAAAGGGGATATGTAGATTACGGTAGATGAGAAAGCAAATGCAACAAAAATTAAGGGTTTGGAAATATGGGACTTTTAAGTATGGGACTATGGGACTTTTGGGACGAAATATGGGACTTTGAAAATCGAAAAAAAAGTGGTAAATTGACAAAATATTTTTGATATTATGATTATCATTTTATCAGTTGGCCACTTTTTTTTCTATCTTTTACAGGAACCGAGATGTATGGGCTCAAACTTGACGGATTGGTTGGCCTTCTAACAGAGTTTTCGGTAATTTTTGCCTCTAGATTTGAAATCAGCAAACGTGCCTATAGCAAAAAAACCCTTATCCAATCATTATAATTAAAATTACTCACTATTTTGATGACTGTGACTAGAATCTAGATTTCCAAAAAAAATAGTGATGTAATTACTCAAATAAAAGTACATCAACCAATCCCTTGGCTGTAACTTCTGATGTCAATGACTTTGTACTTTTAAACTGGGACTACAGTAAGAAGAGACCCAGAATTTCAGGAGGGTAAAAATCCAAACATTTGGAAGCACCCAAAGCTCAAAAACCTTTTCAAATCCAGAAAATTCCAAATTAATTCTGCCTTTGAAAATTCGAAAATTTTATGGTCAGCCGTAAATTTAAATGGTTTACCTCAACTAAGCCAGCCGTAAATCTACCGTAATCTTTGTCTAAAAAAAATAAAAAACCAAGAATGAATCAAAATTTCAAAGAAAAAACATGCAAATCGGTATCTATTTTTGCTTTACTTCTTTTTCTCTCTAATTAAAGCCTTCTAGGTGATGTGACAAATATCACTTGTAGTTTTGAGAGTGTAGAGATTACAATGCTTTGAAATTCATTTTTCAAAACTTTTGATTC</canonical>
            <polymorphic>TGCTCGTTTCCTGTCGTTCTTGTAGAGTTTTCTTGACGAAGCTAGTTTACACTTTTGTGTGCTTTTTTTGGACCAGTTTGTCATTTAGACGGACAACTTTTTTGAGAATATAGATGAGAAGGAAAAAGGGGATATGTAGATTACGGTAGATGAGAAAGCAAATGCAACAAAAATTAAGGGTTTGGAAATATGGGACTTTTAAGTATGGGACTATGGGACTTTTGGGACGAAATATGGGACTTTGAAAATCGAAAAAAAAGTGGTAAATTGACAAAATATTTTTGATATTATGATTATCATTTTATCAGTTGGCCACTTTTTTTTCTATCTTTTACAGGAACCGAGATGTATGGGCTCAAACTTGACGGATTGGTTGGCCTTCTAACAGAGTTTTCGGTAATTTTTGCCTCTAGATTTGAAATCAGCAAACGTGCCTATAGCAAAAAAACCCTTATCCAATCATTATAATTAAAATTACTCACTATTTTGATGACTGTGAYTAGAATCTAGATTTCCAAAAAAAATAGTGATGTAATTACTCAAATAAAAGTACATCAACCAATCCCTTGGCTGTAACTTCTGATGTCAATGACTTTGTACTTTTAAACTGGGACTACAGTAAGAAGAGACCCAGAATTTCAGGAGGGTAAAAATCCAAACATTTGGAAGCACCCAAAGCTCAAAAACCTTTTCAAATCCAGAAAATTCCAAATTAATTCTGCCTTTGAAAATTCGAAAATTTTATGGTCAGCCGTAAATTTAAATGGTTTACCTCAACTAAGCCAGCCGTAAATCTACCGTAATCTTTGTCTAAAAAAAATAAAAAACCAAGAATGAATCAAAATTTCAAAGAAAAAACATGCAAATCGGTATCTATTTTTGCTTTACTTCTTTTTCTCTCTAATTAAAGCCTTCTAGGTGATGTGACAAATATCACTTGTAGTTTTGAGAGTGTAGAGATTACAATGCTTTGAAATTCATTTTTCAAAACTTTTGATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>408 368 90 85 42 7</canonical_bands>
                <polymorphic_bands>408 368 97 85 42</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>495 351 77 77</canonical_bands>
                <polymorphic_bands>572 351 77</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>495 428 77</canonical_bands>
                <polymorphic_bands>923 77</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACCCTTATCCAATCATTA</pcr_primer_p1>
		<pcr_primer_p2>GAAAAGGTTTTTGAGCTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAACCCTTATCCAATCATTATAATTAAAATTACTCACTATTTTGATGACTGTGACTAGAATCTAGATTTCCAAAAAAAATAGTGATGTAATTACTCAAATAAAAGTACATCAACCAATCCCTTGGCTGTAACTTCTGATGTCAATGACTTTGTACTTTTAAACTGGGACTACAGTAAGAAGAGACCCAGAATTTCAGGAGGGTAAAAATCCAAACATTTGGAAGCACCCAAAGCTCAAAAACCTTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACCCTTATCCAATCATTATAATTAAAATTACTCACTATTTTGATGACTGTGAYTAGAATCTAGATTTCCAAAAAAAATAGTGATGTAATTACTCAAATAAAAGTACATCAACCAATCCCTTGGCTGTAACTTCTGATGTCAATGACTTTGTACTTTTAAACTGGGACTACAGTAAGAAGAGACCCAGAATTTCAGGAGGGTAAAAATCCAAACATTTGGAAGCACCCAAAGCTCAAAAACCTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28660</snp_id>
        <super_contig>c004001476.Contig1</super_contig>
        <contig_pos>11351</contig_pos>
        <strand></strand>
        <context>atctcctgct[G/A]tttcgcctct</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGAGGGTGCAGAGAAGCTAGCTTGTCTGCTCCCTCTCCTTATCTCCTGCT</left_flank>
        <right_flank>TTTCGCCTCTAAACTCCAGAAGCTGATAACTCTCTTCAAAATTATTCGTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGGATTAATTGCAATCAAAATACTCAAAAAAGCATTCAAAATGAACCACTTTGAAGCGAGTTATGAGACTTCAAAGTTAGCAGGCGAGAGAGTGTGTGGAAAGTGGTGGGTGCAGAGAAGCTAGCTTGTCTGCACCTCTCCTCTCTCTAAGCTATTTCGCCTGTAAACTTGAAAAGCACGCAACTTGCTCAAAATTATAGTTTGAATTCATTTTTTCACTGTTTGAGTTGAAATGTTTCGTATTTACTATTCGTTTAAAAATCTTCATTATGTTGACGACTTGAAAATCCATTTTCGATAAGTCCTGAATTTATATTTTTGATAATTTTCAGCTCACAAACTCATAAATTTTCATGTCTGACAGTCAAAAAATCATTTGAAACGGACAATTTTGAAGGGAGTTATAGGCCTTCGAAGTTTAGCGGCAAGAGACTGCATGGAAAGAGGAGGGTGCAGAGAAGCTAGCTTGTCTGCTCCCTCTCCTTATCTCCTGCTGTTTCGCCTCTAAACTCCAGAAGCTGATAACTCTCTTCAAAATTATTCGTTTAAATTGATTTTTTTAGCATTTGAATTAGAATTGTTTGTAGATTTCAATTTGAAGAATCAAATGGAAAATACAATTTAGAAATTAGTTATTCGGTTTTCAATTTTGGCTTCTTAAAGATTGTAGTGAAGAGGGGGACGCAGACAAGCAGAGTGTTTGCTCGCCTGCGTTCTCCCCGTTTCCTACACTCTCTCGCCCTCAAACTTAGAAATAGTATAACTAGCTTCAAAATAGTTTCAGAGTAGTCATTTTTAATTCAATTGAATCAGAAAATGTATGTTTTTCAAAAATTACTATCGAGTGTTCAATTTTCCAGAATACAAAATTTCACAAAAATTAAAAAACTGAAAAATCAAAATTCAAAAAACTCTAAAAACTCATTCAAAATGATGTTTAAATGAACCCTAACTGGCCATTTCAAAGGAAGTTATACGTTTCCAAAGTTTGCAGGC</canonical>
            <polymorphic>TTTTTGGATTAATTGCAATCAAAATACTCAAAAAAGCATTCAAAATGAACCACTTTGAAGCGAGTTATGAGACTTCAAAGTTAGCAGGCGAGAGAGTGTGTGGAAAGTGGTGGGTGCAGAGAAGCTAGCTTGTCTGCACCTCTCCTCTCTCTAAGCTATTTCGCCTGTAAACTTGAAAAGCACGCAACTTGCTCAAAATTATAGTTTGAATTCATTTTTTCACTGTTTGAGTTGAAATGTTTCGTATTTACTATTCGTTTAAAAATCTTCATTATGTTGACGACTTGAAAATCCATTTTCGATAAGTCCTGAATTTATATTTTTGATAATTTTCAGCTCACAAACTCATAAATTTTCATGTCTGACAGTCAAAAAATCATTTGAAACGGACAATTTTGAAGGGAGTTATAGGCCTTCGAAGTTTAGCGGCAAGAGACTGCATGGAAAGAGGAGGGTGCAGAGAAGCTAGCTTGTCTGCTCCCTCTCCTTATCTCCTGCTRTTTCGCCTCTAAACTCCAGAAGCTGATAACTCTCTTCAAAATTATTCGTTTAAATTGATTTTTTTAGCATTTGAATTAGAATTGTTTGTAGATTTCAATTTGAAGAATCAAATGGAAAATACAATTTAGAAATTAGTTATTCGGTTTTCAATTTTGGCTTCTTAAAGATTGTAGTGAAGAGGGGGACGCAGACAAGCAGAGTGTTTGCTCGCCTGCGTTCTCCCCGTTTCCTACACTCTCTCGCCCTCAAACTTAGAAATAGTATAACTAGCTTCAAAATAGTTTCAGAGTAGTCATTTTTAATTCAATTGAATCAGAAAATGTATGTTTTTCAAAAATTACTATCGAGTGTTCAATTTTCCAGAATACAAAATTTCACAAAAATTAAAAAACTGAAAAATCAAAATTCAAAAAACTCTAAAAACTCATTCAAAATGATGTTTAAATGAACCCTAACTGGCCATTTCAAAGGAAGTTATACGTTTCCAAAGTTTGCAGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAAACTCATAAATTTTCATGTC</pcr_primer_p1>
		<pcr_primer_p2>CAAACAATTCTAATTCAAATGCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACAAACTCATAAATTTTCATGTCTGACAGTCAAAAAATCATTTGAAACGGACAATTTTGAAGGGAGTTATAGGCCTTCGAAGTTTAGCGGCAAGAGACTGCATGGAAAGAGGAGGGTGCAGAGAAGCTAGCTTGTCTGCTCCCTCTCCTTATCTCCTGCTGTTTCGCCTCTAAACTCCAGAAGCTGATAACTCTCTTCAAAATTATTCGTTTAAATTGATTTTTTTAGCATTTGAATTAGAATTGTTTG</canonical_amplicon>
		<polymorphic_amplicon>CACAAACTCATAAATTTTCATGTCTGACAGTCAAAAAATCATTTGAAACGGACAATTTTGAAGGGAGTTATAGGCCTTCGAAGTTTAGCGGCAAGAGACTGCATGGAAAGAGGAGGGTGCAGAGAAGCTAGCTTGTCTGCTCCCTCTCCTTATCTCCTGCTRTTTCGCCTCTAAACTCCAGAAGCTGATAACTCTCTTCAAAATTATTCGTTTAAATTGATTTTTTTAGCATTTGAATTAGAATTGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28661</snp_id>
        <super_contig>c004001476.Contig1</super_contig>
        <contig_pos>13119</contig_pos>
        <strand></strand>
        <context>ttctagttca[G/A]aggtcccaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTTCCCTAGTGAGAGGGGAGACGCAGAGAATCTGGCTCTATTCTAGTTCA</left_flank>
        <right_flank>AGGTCCCAAAAAAAATTAGAGGTCCCAAAAAATTAGAGGTCCCAAAACAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCGCCTTTGCATTTTTTCAATTTTCGAAAACAAATTTTAATGTGCTTGAATCAGTTCAAAACAAAGAGAATCAGTAAAAAAGTTGTTTCACGAGATTCGATAACCTATGTCCATTTTTACAAGTCAGATACGGTCACCGGAAAGAATGAAGAAAAAATTCAAAAAAAGTTTAGCAGGTCGAGGGAGTCGAACCAGAGAGTCATCACTTGATATTGCTCCTCACTAACCATTCGACCACGCTTCCACATTTTTTCGACGCTTCAAAACTTATATACGTGAGGAAGGAAAATGAGATGAAAAATCCACGTCATTTTTCGAAACTTTCGAGCCAATTTTCTCGAAAACTACCATGACAATGCACTTTTTGAAAATAGATTTGGAATCAGAAAAATGTCAGCTTTCAGATGATATAGGTCACAATCCGTATCTCCACGCCCGAGTTGGGGCCTTCCCTAGTGAGAGGGGAGACGCAGAGAATCTGGCTCTATTCTAGTTCAGAGGTCCCAAAAAAAATTAGAGGTCCCAAAAAATTAGAGGTCCCAAAACAAAGTGTGGTATTCTCAAATTTTGTTTCATCAAATTGTGAACAGAAGAGCTAAATTTTTATTAGAATGTATTATTAAAAGAGAAAGTCCTGAAAACTCTCCTGTGAGTACTAGTGTTCGTGGAACATCTCGCGGCAGATCCAGAAGTCGTGGTCGAAGACTCCATCAATCAACACCGTCATCGCTTTCTCAGAATTCCCTAAACCGCACTATTGGAGTTTCTGCGACAGAAAGTGATTCGCCTCCTCATCCAGTTTCAGGACGCACATCTTCTGCATCATCTACTGGGACATCTCGTAAGACTAGTCGCCGTATAAATAATGGAGCAGATGTTGGCACAAATCAACGAGGAACAACTCGTGGGAAATCTCGTGGAAGTAGGGGCCCTCGTTTGGGACTTCGTGGATCGGCTCGTGGAAGAGTTTCTTCCACCGCTCTTGGAACAAATACTGC</canonical>
            <polymorphic>AATCGCCTTTGCATTTTTTCAATTTTCGAAAACAAATTTTAATGTGCTTGAATCAGTTCAAAACAAAGAGAATCAGTAAAAAAGTTGTTTCACGAGATTCGATAACCTATGTCCATTTTTACAAGTCAGATACGGTCACCGGAAAGAATGAAGAAAAAATTCAAAAAAAGTTTAGCAGGTCGAGGGAGTCGAACCAGAGAGTCATCACTTGATATTGCTCCTCACTAACCATTCGACCACGCTTCCACATTTTTTCGACGCTTCAAAACTTATATACGTGAGGAAGGAAAATGAGATGAAAAATCCACGTCATTTTTCGAAACTTTCGAGCCAATTTTCTCGAAAACTACCATGACAATGCACTTTTTGAAAATAGATTTGGAATCAGAAAAATGTCAGCTTTCAGATGATATAGGTCACAATCCGTATCTCCACGCCCGAGTTGGGGCCTTCCCTAGTGAGAGGGGAGACGCAGAGAATCTGGCTCTATTCTAGTTCARAGGTCCCAAAAAAAATTAGAGGTCCCAAAAAATTAGAGGTCCCAAAACAAAGTGTGGTATTCTCAAATTTTGTTTCATCAAATTGTGAACAGAAGAGCTAAATTTTTATTAGAATGTATTATTAAAAGAGAAAGTCCTGAAAACTCTCCTGTGAGTACTAGTGTTCGTGGAACATCTCGCGGCAGATCCAGAAGTCGTGGTCGAAGACTCCATCAATCAACACCGTCATCGCTTTCTCAGAATTCCCTAAACCGCACTATTGGAGTTTCTGCGACAGAAAGTGATTCGCCTCCTCATCCAGTTTCAGGACGCACATCTTCTGCATCATCTACTGGGACATCTCGTAAGACTAGTCGCCGTATAAATAATGGAGCAGATGTTGGCACAAATCAACGAGGAACAACTCGTGGGAAATCTCGTGGAAGTAGGGGCCCTCGTTTGGGACTTCGTGGATCGGCTCGTGGAAGAGTTTCTTCCACCGCTCTTGGAACAAATACTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>261 259 240 128 94 18</canonical_bands>
                <polymorphic_bands>334 261 259 128 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATGAAAAATCCACGTCAT</pcr_primer_p1>
		<pcr_primer_p2>TTTAGCTCTTCTGTTCACAATTT</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>AGATGAAAAATCCACGTCATTTTTCGAAACTTTCGAGCCAATTTTCTCGAAAACTACCATGACAATGCACTTTTTGAAAATAGATTTGGAATCAGAAAAATGTCAGCTTTCAGATGATATAGGTCACAATCCGTATCTCCACGCCCGAGTTGGGGCCTTCCCTAGTGAGAGGGGAGACGCAGAGAATCTGGCTCTATTCTAGTTCAGAGGTCCCAAAAAAAATTAGAGGTCCCAAAAAATTAGAGGTCCCAAAACAAAGTGTGGTATTCTCAAATTTTGTTTCATCAAATTGTGAACAGAAGAGCTAAA</canonical_amplicon>
		<polymorphic_amplicon>AGATGAAAAATCCACGTCATTTTTCGAAACTTTCGAGCCAATTTTCTCGAAAACTACCATGACAATGCACTTTTTGAAAATAGATTTGGAATCAGAAAAATGTCAGCTTTCAGATGATATAGGTCACAATCCGTATCTCCACGCCCGAGTTGGGGCCTTCCCTAGTGAGAGGGGAGACGCAGAGAATCTGGCTCTATTCTAGTTCARAGGTCCCAAAAAAAATTAGAGGTCCCAAAAAATTAGAGGTCCCAAAACAAAGTGTGGTATTCTCAAATTTTGTTTCATCAAATTGTGAACAGAAGAGCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28662</snp_id>
        <super_contig>c004001476.Contig1</super_contig>
        <contig_pos>13467</contig_pos>
        <strand>+</strand>
        <context>CATCTCGTAA[A/G]ACTAGTCGCC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAGTTTCAGGACGCACATCTTCTGCATCATCTACTGGGACATCTCGTAA</left_flank>
        <right_flank>ACTAGTCGCCGTATAAATAATGGAGCAGATGTTGGCACAAATCAACGAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCATGACAATGCACTTTTTGAAAATAGATTTGGAATCAGAAAAATGTCAGCTTTCAGATGATATAGGTCACAATCCGTATCTCCACGCCCGAGTTGGGGCCTTCCCTAGTGAGAGGGGAGACGCAGAGAATCTGGCTCTATTCTAGTTCAGAGGTCCCAAAAAAAATTAGAGGTCCCAAAAAATTAGAGGTCCCAAAACAAAGTGTGGTATTCTCAAATTTTGTTTCATCAAATTGTGAACAGAAGAGCTAAATTTTTATTAGAATGTATTATTAAAAGAGAAAGTCCTGAAAACTCTCCTGTGAGTACTAGTGTTCGTGGAACATCTCGCGGCAGATCCAGAAGTCGTGGTCGAAGACTCCATCAATCAACACCGTCATCGCTTTCTCAGAATTCCCTAAACCGCACTATTGGAGTTTCTGCGACAGAAAGTGATTCGCCTCCTCATCCAGTTTCAGGACGCACATCTTCTGCATCATCTACTGGGACATCTCGTAAGACTAGTCGCCGTATAAATAATGGAGCAGATGTTGGCACAAATCAACGAGGAACAACTCGTGGGAAATCTCGTGGAAGTAGGGGCCCTCGTTTGGGACTTCGTGGATCGGCTCGTGGAAGAGTTTCTTCCACCGCTCTTGGAACAAATACTGCAGAAAATAACAACCGGCGTGGTTCGACACAAAATTCCGGAGCCGCTGGACGATCAATTCCGGGAAGAGGGAGACCTCGTGGAAGAGCTCGCGGAAGTGTACCAATTCGTGGTCAGCGAATGAAGAAAGATTAATAAAACGTTGAACAAAATGTTATTAATAAAATTTGAATTGAAAAAAAAATTGAATCTCTGTTCAGCCAAAAATTTTGTTCACCCAAACTTTGATTTGAGAATACCGCACTTTGCTTTCGGAACTCTAATTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTTTTGGGACCTCTATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTC</canonical>
            <polymorphic>ACCATGACAATGCACTTTTTGAAAATAGATTTGGAATCAGAAAAATGTCAGCTTTCAGATGATATAGGTCACAATCCGTATCTCCACGCCCGAGTTGGGGCCTTCCCTAGTGAGAGGGGAGACGCAGAGAATCTGGCTCTATTCTAGTTCAGAGGTCCCAAAAAAAATTAGAGGTCCCAAAAAATTAGAGGTCCCAAAACAAAGTGTGGTATTCTCAAATTTTGTTTCATCAAATTGTGAACAGAAGAGCTAAATTTTTATTAGAATGTATTATTAAAAGAGAAAGTCCTGAAAACTCTCCTGTGAGTACTAGTGTTCGTGGAACATCTCGCGGCAGATCCAGAAGTCGTGGTCGAAGACTCCATCAATCAACACCGTCATCGCTTTCTCAGAATTCCCTAAACCGCACTATTGGAGTTTCTGCGACAGAAAGTGATTCGCCTCCTCATCCAGTTTCAGGACGCACATCTTCTGCATCATCTACTGGGACATCTCGTAARACTAGTCGCCGTATAAATAATGGAGCAGATGTTGGCACAAATCAACGAGGAACAACTCGTGGGAAATCTCGTGGAAGTAGGGGCCCTCGTTTGGGACTTCGTGGATCGGCTCGTGGAAGAGTTTCTTCCACCGCTCTTGGAACAAATACTGCAGAAAATAACAACCGGCGTGGTTCGACACAAAATTCCGGAGCCGCTGGACGATCAATTCCGGGAAGAGGGAGACCTCGTGGAAGAGCTCGCGGAAGTGTACCAATTCGTGGTCAGCGAATGAAGAAAGATTAATAAAACGTTGAACAAAATGTTATTAATAAAATTTGAATTGAAAAAAAAATTGAATCTCTGTTCAGCCAAAAATTTTGTTCACCCAAACTTTGATTTGAGAATACCGCACTTTGCTTTCGGAACTCTAATTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTTTTGGGACCTCTATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTGCGACAGAAAGTGATT</pcr_primer_p1>
		<pcr_primer_p2>TTATTTTCTGCAGTATTTGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTCTGCGACAGAAAGTGATTCGCCTCCTCATCCAGTTTCAGGACGCACATCTTCTGCATCATCTACTGGGACATCTCGTAAGACTAGTCGCCGTATAAATAATGGAGCAGATGTTGGCACAAATCAACGAGGAACAACTCGTGGGAAATCTCGTGGAAGTAGGGGCCCTCGTTTGGGACTTCGTGGATCGGCTCGTGGAAGAGTTTCTTCCACCGCTCTTGGAACAAATACTGCAGAAAATAA</canonical_amplicon>
		<polymorphic_amplicon>TTCTGCGACAGAAAGTGATTCGCCTCCTCATCCAGTTTCAGGACGCACATCTTCTGCATCATCTACTGGGACATCTCGTAARACTAGTCGCCGTATAAATAATGGAGCAGATGTTGGCACAAATCAACGAGGAACAACTCGTGGGAAATCTCGTGGAAGTAGGGGCCCTCGTTTGGGACTTCGTGGATCGGCTCGTGGAAGAGTTTCTTCCACCGCTCTTGGAACAAATACTGCAGAAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28663</snp_id>
        <super_contig>c004001476.Contig1</super_contig>
        <contig_pos>13490</contig_pos>
        <strand>+</strand>
        <context>ATAAATAATG[A/G]AGCAGATGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCATCATCTACTGGGACATCTCGTAAGACTAGTCGCCGTATAAATAATG</left_flank>
        <right_flank>AGCAGATGTTGGCACAAATCAACGAGGAACAACTCGTGGGAAATCTCGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAGATTTGGAATCAGAAAAATGTCAGCTTTCAGATGATATAGGTCACAATCCGTATCTCCACGCCCGAGTTGGGGCCTTCCCTAGTGAGAGGGGAGACGCAGAGAATCTGGCTCTATTCTAGTTCAGAGGTCCCAAAAAAAATTAGAGGTCCCAAAAAATTAGAGGTCCCAAAACAAAGTGTGGTATTCTCAAATTTTGTTTCATCAAATTGTGAACAGAAGAGCTAAATTTTTATTAGAATGTATTATTAAAAGAGAAAGTCCTGAAAACTCTCCTGTGAGTACTAGTGTTCGTGGAACATCTCGCGGCAGATCCAGAAGTCGTGGTCGAAGACTCCATCAATCAACACCGTCATCGCTTTCTCAGAATTCCCTAAACCGCACTATTGGAGTTTCTGCGACAGAAAGTGATTCGCCTCCTCATCCAGTTTCAGGACGCACATCTTCTGCATCATCTACTGGGACATCTCGTAAGACTAGTCGCCGTATAAATAATGGAGCAGATGTTGGCACAAATCAACGAGGAACAACTCGTGGGAAATCTCGTGGAAGTAGGGGCCCTCGTTTGGGACTTCGTGGATCGGCTCGTGGAAGAGTTTCTTCCACCGCTCTTGGAACAAATACTGCAGAAAATAACAACCGGCGTGGTTCGACACAAAATTCCGGAGCCGCTGGACGATCAATTCCGGGAAGAGGGAGACCTCGTGGAAGAGCTCGCGGAAGTGTACCAATTCGTGGTCAGCGAATGAAGAAAGATTAATAAAACGTTGAACAAAATGTTATTAATAAAATTTGAATTGAAAAAAAAATTGAATCTCTGTTCAGCCAAAAATTTTGTTCACCCAAACTTTGATTTGAGAATACCGCACTTTGCTTTCGGAACTCTAATTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTTTTGGGACCTCTATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAAT</canonical>
            <polymorphic>AATAGATTTGGAATCAGAAAAATGTCAGCTTTCAGATGATATAGGTCACAATCCGTATCTCCACGCCCGAGTTGGGGCCTTCCCTAGTGAGAGGGGAGACGCAGAGAATCTGGCTCTATTCTAGTTCAGAGGTCCCAAAAAAAATTAGAGGTCCCAAAAAATTAGAGGTCCCAAAACAAAGTGTGGTATTCTCAAATTTTGTTTCATCAAATTGTGAACAGAAGAGCTAAATTTTTATTAGAATGTATTATTAAAAGAGAAAGTCCTGAAAACTCTCCTGTGAGTACTAGTGTTCGTGGAACATCTCGCGGCAGATCCAGAAGTCGTGGTCGAAGACTCCATCAATCAACACCGTCATCGCTTTCTCAGAATTCCCTAAACCGCACTATTGGAGTTTCTGCGACAGAAAGTGATTCGCCTCCTCATCCAGTTTCAGGACGCACATCTTCTGCATCATCTACTGGGACATCTCGTAAGACTAGTCGCCGTATAAATAATGRAGCAGATGTTGGCACAAATCAACGAGGAACAACTCGTGGGAAATCTCGTGGAAGTAGGGGCCCTCGTTTGGGACTTCGTGGATCGGCTCGTGGAAGAGTTTCTTCCACCGCTCTTGGAACAAATACTGCAGAAAATAACAACCGGCGTGGTTCGACACAAAATTCCGGAGCCGCTGGACGATCAATTCCGGGAAGAGGGAGACCTCGTGGAAGAGCTCGCGGAAGTGTACCAATTCGTGGTCAGCGAATGAAGAAAGATTAATAAAACGTTGAACAAAATGTTATTAATAAAATTTGAATTGAAAAAAAAATTGAATCTCTGTTCAGCCAAAAATTTTGTTCACCCAAACTTTGATTTGAGAATACCGCACTTTGCTTTCGGAACTCTAATTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTTTTGGGACCTCTATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTGCGACAGAAAGTGATT</pcr_primer_p1>
		<pcr_primer_p2>TTATTTTCTGCAGTATTTGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTCTGCGACAGAAAGTGATTCGCCTCCTCATCCAGTTTCAGGACGCACATCTTCTGCATCATCTACTGGGACATCTCGTAAGACTAGTCGCCGTATAAATAATGGAGCAGATGTTGGCACAAATCAACGAGGAACAACTCGTGGGAAATCTCGTGGAAGTAGGGGCCCTCGTTTGGGACTTCGTGGATCGGCTCGTGGAAGAGTTTCTTCCACCGCTCTTGGAACAAATACTGCAGAAAATAA</canonical_amplicon>
		<polymorphic_amplicon>TTCTGCGACAGAAAGTGATTCGCCTCCTCATCCAGTTTCAGGACGCACATCTTCTGCATCATCTACTGGGACATCTCGTAAGACTAGTCGCCGTATAAATAATGRAGCAGATGTTGGCACAAATCAACGAGGAACAACTCGTGGGAAATCTCGTGGAAGTAGGGGCCCTCGTTTGGGACTTCGTGGATCGGCTCGTGGAAGAGTTTCTTCCACCGCTCTTGGAACAAATACTGCAGAAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28664</snp_id>
        <super_contig>c004001476.Contig1</super_contig>
        <contig_pos>13545</contig_pos>
        <strand>+</strand>
        <context>CTCGTGGAAG[A/T]AGGGGCCCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATGTTGGCACAAATCAACGAGGAACAACTCGTGGGAAATCTCGTGGAAG</left_flank>
        <right_flank>AGGGGCCCTCGTTTGGGACTTCGTGGATCGGCTCGTGGAAGAGTTTCTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCTCCACGCCCGAGTTGGGGCCTTCCCTAGTGAGAGGGGAGACGCAGAGAATCTGGCTCTATTCTAGTTCAGAGGTCCCAAAAAAAATTAGAGGTCCCAAAAAATTAGAGGTCCCAAAACAAAGTGTGGTATTCTCAAATTTTGTTTCATCAAATTGTGAACAGAAGAGCTAAATTTTTATTAGAATGTATTATTAAAAGAGAAAGTCCTGAAAACTCTCCTGTGAGTACTAGTGTTCGTGGAACATCTCGCGGCAGATCCAGAAGTCGTGGTCGAAGACTCCATCAATCAACACCGTCATCGCTTTCTCAGAATTCCCTAAACCGCACTATTGGAGTTTCTGCGACAGAAAGTGATTCGCCTCCTCATCCAGTTTCAGGACGCACATCTTCTGCATCATCTACTGGGACATCTCGTAAGACTAGTCGCCGTATAAATAATGGAGCAGATGTTGGCACAAATCAACGAGGAACAACTCGTGGGAAATCTCGTGGAAGTAGGGGCCCTCGTTTGGGACTTCGTGGATCGGCTCGTGGAAGAGTTTCTTCCACCGCTCTTGGAACAAATACTGCAGAAAATAACAACCGGCGTGGTTCGACACAAAATTCCGGAGCCGCTGGACGATCAATTCCGGGAAGAGGGAGACCTCGTGGAAGAGCTCGCGGAAGTGTACCAATTCGTGGTCAGCGAATGAAGAAAGATTAATAAAACGTTGAACAAAATGTTATTAATAAAATTTGAATTGAAAAAAAAATTGAATCTCTGTTCAGCCAAAAATTTTGTTCACCCAAACTTTGATTTGAGAATACCGCACTTTGCTTTCGGAACTCTAATTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTTTTGGGACCTCTATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTTTGGGACCTCTATTTTTTTTGGGACCTCTATTTT</canonical>
            <polymorphic>TATCTCCACGCCCGAGTTGGGGCCTTCCCTAGTGAGAGGGGAGACGCAGAGAATCTGGCTCTATTCTAGTTCAGAGGTCCCAAAAAAAATTAGAGGTCCCAAAAAATTAGAGGTCCCAAAACAAAGTGTGGTATTCTCAAATTTTGTTTCATCAAATTGTGAACAGAAGAGCTAAATTTTTATTAGAATGTATTATTAAAAGAGAAAGTCCTGAAAACTCTCCTGTGAGTACTAGTGTTCGTGGAACATCTCGCGGCAGATCCAGAAGTCGTGGTCGAAGACTCCATCAATCAACACCGTCATCGCTTTCTCAGAATTCCCTAAACCGCACTATTGGAGTTTCTGCGACAGAAAGTGATTCGCCTCCTCATCCAGTTTCAGGACGCACATCTTCTGCATCATCTACTGGGACATCTCGTAAGACTAGTCGCCGTATAAATAATGGAGCAGATGTTGGCACAAATCAACGAGGAACAACTCGTGGGAAATCTCGTGGAAGWAGGGGCCCTCGTTTGGGACTTCGTGGATCGGCTCGTGGAAGAGTTTCTTCCACCGCTCTTGGAACAAATACTGCAGAAAATAACAACCGGCGTGGTTCGACACAAAATTCCGGAGCCGCTGGACGATCAATTCCGGGAAGAGGGAGACCTCGTGGAAGAGCTCGCGGAAGTGTACCAATTCGTGGTCAGCGAATGAAGAAAGATTAATAAAACGTTGAACAAAATGTTATTAATAAAATTTGAATTGAAAAAAAAATTGAATCTCTGTTCAGCCAAAAATTTTGTTCACCCAAACTTTGATTTGAGAATACCGCACTTTGCTTTCGGAACTCTAATTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTTTTGGGACCTCTATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTTTGGGACCTCTATTTTTTTTGGGACCTCTATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTGCGACAGAAAGTGATT</pcr_primer_p1>
		<pcr_primer_p2>TTATTTTCTGCAGTATTTGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTCTGCGACAGAAAGTGATTCGCCTCCTCATCCAGTTTCAGGACGCACATCTTCTGCATCATCTACTGGGACATCTCGTAAGACTAGTCGCCGTATAAATAATGGAGCAGATGTTGGCACAAATCAACGAGGAACAACTCGTGGGAAATCTCGTGGAAGTAGGGGCCCTCGTTTGGGACTTCGTGGATCGGCTCGTGGAAGAGTTTCTTCCACCGCTCTTGGAACAAATACTGCAGAAAATAA</canonical_amplicon>
		<polymorphic_amplicon>TTCTGCGACAGAAAGTGATTCGCCTCCTCATCCAGTTTCAGGACGCACATCTTCTGCATCATCTACTGGGACATCTCGTAAGACTAGTCGCCGTATAAATAATGGAGCAGATGTTGGCACAAATCAACGAGGAACAACTCGTGGGAAATCTCGTGGAAGWAGGGGCCCTCGTTTGGGACTTCGTGGATCGGCTCGTGGAAGAGTTTCTTCCACCGCTCTTGGAACAAATACTGCAGAAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28665</snp_id>
        <super_contig>c004001476.Contig1</super_contig>
        <contig_pos>13630</contig_pos>
        <strand>+</strand>
        <context>AGAAAATAAC[A/G]ACCGGCGTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGGAAGAGTTTCTTCCACCGCTCTTGGAACAAATACTGCAGAAAATAAC</left_flank>
        <right_flank>ACCGGCGTGGTTCGACACAAAATTCCGGAGCCGCTGGACGATCAATTCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTAGAGGTCCCAAAAAATTAGAGGTCCCAAAACAAAGTGTGGTATTCTCAAATTTTGTTTCATCAAATTGTGAACAGAAGAGCTAAATTTTTATTAGAATGTATTATTAAAAGAGAAAGTCCTGAAAACTCTCCTGTGAGTACTAGTGTTCGTGGAACATCTCGCGGCAGATCCAGAAGTCGTGGTCGAAGACTCCATCAATCAACACCGTCATCGCTTTCTCAGAATTCCCTAAACCGCACTATTGGAGTTTCTGCGACAGAAAGTGATTCGCCTCCTCATCCAGTTTCAGGACGCACATCTTCTGCATCATCTACTGGGACATCTCGTAAGACTAGTCGCCGTATAAATAATGGAGCAGATGTTGGCACAAATCAACGAGGAACAACTCGTGGGAAATCTCGTGGAAGTAGGGGCCCTCGTTTGGGACTTCGTGGATCGGCTCGTGGAAGAGTTTCTTCCACCGCTCTTGGAACAAATACTGCAGAAAATAACAACCGGCGTGGTTCGACACAAAATTCCGGAGCCGCTGGACGATCAATTCCGGGAAGAGGGAGACCTCGTGGAAGAGCTCGCGGAAGTGTACCAATTCGTGGTCAGCGAATGAAGAAAGATTAATAAAACGTTGAACAAAATGTTATTAATAAAATTTGAATTGAAAAAAAAATTGAATCTCTGTTCAGCCAAAAATTTTGTTCACCCAAACTTTGATTTGAGAATACCGCACTTTGCTTTCGGAACTCTAATTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTTTTGGGACCTCTATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTTTGGGACCTCTATTTTTTTTGGGACCTCTATTTTTTTGGGACCTCTAATTTTTTTTTTGCCCTCTATTTTTTTTGGACCTCTATTTTTTTTTTGGGACCTCTATTTTTTTTTGGGACCT</canonical>
            <polymorphic>AAAATTAGAGGTCCCAAAAAATTAGAGGTCCCAAAACAAAGTGTGGTATTCTCAAATTTTGTTTCATCAAATTGTGAACAGAAGAGCTAAATTTTTATTAGAATGTATTATTAAAAGAGAAAGTCCTGAAAACTCTCCTGTGAGTACTAGTGTTCGTGGAACATCTCGCGGCAGATCCAGAAGTCGTGGTCGAAGACTCCATCAATCAACACCGTCATCGCTTTCTCAGAATTCCCTAAACCGCACTATTGGAGTTTCTGCGACAGAAAGTGATTCGCCTCCTCATCCAGTTTCAGGACGCACATCTTCTGCATCATCTACTGGGACATCTCGTAAGACTAGTCGCCGTATAAATAATGGAGCAGATGTTGGCACAAATCAACGAGGAACAACTCGTGGGAAATCTCGTGGAAGTAGGGGCCCTCGTTTGGGACTTCGTGGATCGGCTCGTGGAAGAGTTTCTTCCACCGCTCTTGGAACAAATACTGCAGAAAATAACRACCGGCGTGGTTCGACACAAAATTCCGGAGCCGCTGGACGATCAATTCCGGGAAGAGGGAGACCTCGTGGAAGAGCTCGCGGAAGTGTACCAATTCGTGGTCAGCGAATGAAGAAAGATTAATAAAACGTTGAACAAAATGTTATTAATAAAATTTGAATTGAAAAAAAAATTGAATCTCTGTTCAGCCAAAAATTTTGTTCACCCAAACTTTGATTTGAGAATACCGCACTTTGCTTTCGGAACTCTAATTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTTTTGGGACCTCTATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTTTGGGACCTCTATTTTTTTTGGGACCTCTATTTTTTTGGGACCTCTAATTTTTTTTTTGCCCTCTATTTTTTTTGGACCTCTATTTTTTTTTTGGGACCTCTATTTTTTTTTGGGACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAATCAACGAGGAACAACT</pcr_primer_p1>
		<pcr_primer_p2>TAATCTTTCTTCATTCGCTGAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACAAATCAACGAGGAACAACTCGTGGGAAATCTCGTGGAAGTAGGGGCCCTCGTTTGGGACTTCGTGGATCGGCTCGTGGAAGAGTTTCTTCCACCGCTCTTGGAACAAATACTGCAGAAAATAACAACCGGCGTGGTTCGACACAAAATTCCGGAGCCGCTGGACGATCAATTCCGGGAAGAGGGAGACCTCGTGGAAGAGCTCGCGGAAGTGTACCAATTCGTGGTCAGCGAATGAAGAAAGATTA</canonical_amplicon>
		<polymorphic_amplicon>ACAAATCAACGAGGAACAACTCGTGGGAAATCTCGTGGAAGTAGGGGCCCTCGTTTGGGACTTCGTGGATCGGCTCGTGGAAGAGTTTCTTCCACCGCTCTTGGAACAAATACTGCAGAAAATAACRACCGGCGTGGTTCGACACAAAATTCCGGAGCCGCTGGACGATCAATTCCGGGAAGAGGGAGACCTCGTGGAAGAGCTCGCGGAAGTGTACCAATTCGTGGTCAGCGAATGAAGAAAGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28666</snp_id>
        <super_contig>c004001476.Contig1</super_contig>
        <contig_pos>13649</contig_pos>
        <strand>+</strand>
        <context>GGTTCGACAC[A/G]AAATTCCGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCTCTTGGAACAAATACTGCAGAAAATAACAACCGGCGTGGTTCGACAC</left_flank>
        <right_flank>AAATTCCGGAGCCGCTGGACGATCAATTCCGGGAAGAGGGAGACCTCGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTAGAGGTCCCAAAACAAAGTGTGGTATTCTCAAATTTTGTTTCATCAAATTGTGAACAGAAGAGCTAAATTTTTATTAGAATGTATTATTAAAAGAGAAAGTCCTGAAAACTCTCCTGTGAGTACTAGTGTTCGTGGAACATCTCGCGGCAGATCCAGAAGTCGTGGTCGAAGACTCCATCAATCAACACCGTCATCGCTTTCTCAGAATTCCCTAAACCGCACTATTGGAGTTTCTGCGACAGAAAGTGATTCGCCTCCTCATCCAGTTTCAGGACGCACATCTTCTGCATCATCTACTGGGACATCTCGTAAGACTAGTCGCCGTATAAATAATGGAGCAGATGTTGGCACAAATCAACGAGGAACAACTCGTGGGAAATCTCGTGGAAGTAGGGGCCCTCGTTTGGGACTTCGTGGATCGGCTCGTGGAAGAGTTTCTTCCACCGCTCTTGGAACAAATACTGCAGAAAATAACAACCGGCGTGGTTCGACACAAAATTCCGGAGCCGCTGGACGATCAATTCCGGGAAGAGGGAGACCTCGTGGAAGAGCTCGCGGAAGTGTACCAATTCGTGGTCAGCGAATGAAGAAAGATTAATAAAACGTTGAACAAAATGTTATTAATAAAATTTGAATTGAAAAAAAAATTGAATCTCTGTTCAGCCAAAAATTTTGTTCACCCAAACTTTGATTTGAGAATACCGCACTTTGCTTTCGGAACTCTAATTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTTTTGGGACCTCTATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTTTGGGACCTCTATTTTTTTTGGGACCTCTATTTTTTTGGGACCTCTAATTTTTTTTTTGCCCTCTATTTTTTTTGGACCTCTATTTTTTTTTTGGGACCTCTATTTTTTTTTGGGACCTCTAAACTAGAATAGAGCCG</canonical>
            <polymorphic>AATTAGAGGTCCCAAAACAAAGTGTGGTATTCTCAAATTTTGTTTCATCAAATTGTGAACAGAAGAGCTAAATTTTTATTAGAATGTATTATTAAAAGAGAAAGTCCTGAAAACTCTCCTGTGAGTACTAGTGTTCGTGGAACATCTCGCGGCAGATCCAGAAGTCGTGGTCGAAGACTCCATCAATCAACACCGTCATCGCTTTCTCAGAATTCCCTAAACCGCACTATTGGAGTTTCTGCGACAGAAAGTGATTCGCCTCCTCATCCAGTTTCAGGACGCACATCTTCTGCATCATCTACTGGGACATCTCGTAAGACTAGTCGCCGTATAAATAATGGAGCAGATGTTGGCACAAATCAACGAGGAACAACTCGTGGGAAATCTCGTGGAAGTAGGGGCCCTCGTTTGGGACTTCGTGGATCGGCTCGTGGAAGAGTTTCTTCCACCGCTCTTGGAACAAATACTGCAGAAAATAACAACCGGCGTGGTTCGACACRAAATTCCGGAGCCGCTGGACGATCAATTCCGGGAAGAGGGAGACCTCGTGGAAGAGCTCGCGGAAGTGTACCAATTCGTGGTCAGCGAATGAAGAAAGATTAATAAAACGTTGAACAAAATGTTATTAATAAAATTTGAATTGAAAAAAAAATTGAATCTCTGTTCAGCCAAAAATTTTGTTCACCCAAACTTTGATTTGAGAATACCGCACTTTGCTTTCGGAACTCTAATTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTTTTGGGACCTCTATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTTTGGGACCTCTATTTTTTTTGGGACCTCTATTTTTTTGGGACCTCTAATTTTTTTTTTGCCCTCTATTTTTTTTGGACCTCTATTTTTTTTTTGGGACCTCTATTTTTTTTTGGGACCTCTAAACTAGAATAGAGCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAATCAACGAGGAACAACT</pcr_primer_p1>
		<pcr_primer_p2>TAATCTTTCTTCATTCGCTGAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACAAATCAACGAGGAACAACTCGTGGGAAATCTCGTGGAAGTAGGGGCCCTCGTTTGGGACTTCGTGGATCGGCTCGTGGAAGAGTTTCTTCCACCGCTCTTGGAACAAATACTGCAGAAAATAACAACCGGCGTGGTTCGACACAAAATTCCGGAGCCGCTGGACGATCAATTCCGGGAAGAGGGAGACCTCGTGGAAGAGCTCGCGGAAGTGTACCAATTCGTGGTCAGCGAATGAAGAAAGATTA</canonical_amplicon>
		<polymorphic_amplicon>ACAAATCAACGAGGAACAACTCGTGGGAAATCTCGTGGAAGTAGGGGCCCTCGTTTGGGACTTCGTGGATCGGCTCGTGGAAGAGTTTCTTCCACCGCTCTTGGAACAAATACTGCAGAAAATAACAACCGGCGTGGTTCGACACRAAATTCCGGAGCCGCTGGACGATCAATTCCGGGAAGAGGGAGACCTCGTGGAAGAGCTCGCGGAAGTGTACCAATTCGTGGTCAGCGAATGAAGAAAGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28667</snp_id>
        <super_contig>c004001476.Contig1</super_contig>
        <contig_pos>13674</contig_pos>
        <strand>+</strand>
        <context>CTGGACGATC[A/C]ATTCCGGGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATAACAACCGGCGTGGTTCGACACAAAATTCCGGAGCCGCTGGACGATC</left_flank>
        <right_flank>ATTCCGGGAAGAGGGAGACCTCGTGGAAGAGCTCGCGGAAGTGTACCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTATTCTCAAATTTTGTTTCATCAAATTGTGAACAGAAGAGCTAAATTTTTATTAGAATGTATTATTAAAAGAGAAAGTCCTGAAAACTCTCCTGTGAGTACTAGTGTTCGTGGAACATCTCGCGGCAGATCCAGAAGTCGTGGTCGAAGACTCCATCAATCAACACCGTCATCGCTTTCTCAGAATTCCCTAAACCGCACTATTGGAGTTTCTGCGACAGAAAGTGATTCGCCTCCTCATCCAGTTTCAGGACGCACATCTTCTGCATCATCTACTGGGACATCTCGTAAGACTAGTCGCCGTATAAATAATGGAGCAGATGTTGGCACAAATCAACGAGGAACAACTCGTGGGAAATCTCGTGGAAGTAGGGGCCCTCGTTTGGGACTTCGTGGATCGGCTCGTGGAAGAGTTTCTTCCACCGCTCTTGGAACAAATACTGCAGAAAATAACAACCGGCGTGGTTCGACACAAAATTCCGGAGCCGCTGGACGATCAATTCCGGGAAGAGGGAGACCTCGTGGAAGAGCTCGCGGAAGTGTACCAATTCGTGGTCAGCGAATGAAGAAAGATTAATAAAACGTTGAACAAAATGTTATTAATAAAATTTGAATTGAAAAAAAAATTGAATCTCTGTTCAGCCAAAAATTTTGTTCACCCAAACTTTGATTTGAGAATACCGCACTTTGCTTTCGGAACTCTAATTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTTTTGGGACCTCTATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTTTGGGACCTCTATTTTTTTTGGGACCTCTATTTTTTTGGGACCTCTAATTTTTTTTTTGCCCTCTATTTTTTTTGGACCTCTATTTTTTTTTTGGGACCTCTATTTTTTTTTGGGACCTCTAAACTAGAATAGAGCCGAGAATCTTGCTTCACTGCGTCTCCC</canonical>
            <polymorphic>GGTATTCTCAAATTTTGTTTCATCAAATTGTGAACAGAAGAGCTAAATTTTTATTAGAATGTATTATTAAAAGAGAAAGTCCTGAAAACTCTCCTGTGAGTACTAGTGTTCGTGGAACATCTCGCGGCAGATCCAGAAGTCGTGGTCGAAGACTCCATCAATCAACACCGTCATCGCTTTCTCAGAATTCCCTAAACCGCACTATTGGAGTTTCTGCGACAGAAAGTGATTCGCCTCCTCATCCAGTTTCAGGACGCACATCTTCTGCATCATCTACTGGGACATCTCGTAAGACTAGTCGCCGTATAAATAATGGAGCAGATGTTGGCACAAATCAACGAGGAACAACTCGTGGGAAATCTCGTGGAAGTAGGGGCCCTCGTTTGGGACTTCGTGGATCGGCTCGTGGAAGAGTTTCTTCCACCGCTCTTGGAACAAATACTGCAGAAAATAACAACCGGCGTGGTTCGACACAAAATTCCGGAGCCGCTGGACGATCMATTCCGGGAAGAGGGAGACCTCGTGGAAGAGCTCGCGGAAGTGTACCAATTCGTGGTCAGCGAATGAAGAAAGATTAATAAAACGTTGAACAAAATGTTATTAATAAAATTTGAATTGAAAAAAAAATTGAATCTCTGTTCAGCCAAAAATTTTGTTCACCCAAACTTTGATTTGAGAATACCGCACTTTGCTTTCGGAACTCTAATTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTTTTGGGACCTCTATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTTTGGGACCTCTATTTTTTTTGGGACCTCTATTTTTTTGGGACCTCTAATTTTTTTTTTGCCCTCTATTTTTTTTGGACCTCTATTTTTTTTTTGGGACCTCTATTTTTTTTTGGGACCTCTAAACTAGAATAGAGCCGAGAATCTTGCTTCACTGCGTCTCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>291 140 117 70 60 56 54 48 23 23 20 19 19 17 15 12 10 6</canonical_bands>
                <polymorphic_bands>291 140 117 71 70 60 56 54 23 20 19 19 17 15 12 10 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAACAAATACTGCAGAAAATAA</pcr_primer_p1>
		<pcr_primer_p2>AATCAAAGTTTGGGTGAACA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GGAACAAATACTGCAGAAAATAACAACCGGCGTGGTTCGACACAAAATTCCGGAGCCGCTGGACGATCAATTCCGGGAAGAGGGAGACCTCGTGGAAGAGCTCGCGGAAGTGTACCAATTCGTGGTCAGCGAATGAAGAAAGATTAATAAAACGTTGAACAAAATGTTATTAATAAAATTTGAATTGAAAAAAAAATTGAATCTCTGTTCAGCCAAAAATTTTGTTCACCCAAACTTTGATT</canonical_amplicon>
		<polymorphic_amplicon>GGAACAAATACTGCAGAAAATAACAACCGGCGTGGTTCGACACAAAATTCCGGAGCCGCTGGACGATCMATTCCGGGAAGAGGGAGACCTCGTGGAAGAGCTCGCGGAAGTGTACCAATTCGTGGTCAGCGAATGAAGAAAGATTAATAAAACGTTGAACAAAATGTTATTAATAAAATTTGAATTGAAAAAAAAATTGAATCTCTGTTCAGCCAAAAATTTTGTTCACCCAAACTTTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28668</snp_id>
        <super_contig>c004001476.Contig1</super_contig>
        <contig_pos>13762</contig_pos>
        <strand>+</strand>
        <context>ATAAAACGTT[A/G]AACAAAATGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGTGTACCAATTCGTGGTCAGCGAATGAAGAAAGATTAATAAAACGTT</left_flank>
        <right_flank>AACAAAATGTTATTAATAAAATTTGAATTGAAAAAAAAATTGAATCTCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTCCTGTGAGTACTAGTGTTCGTGGAACATCTCGCGGCAGATCCAGAAGTCGTGGTCGAAGACTCCATCAATCAACACCGTCATCGCTTTCTCAGAATTCCCTAAACCGCACTATTGGAGTTTCTGCGACAGAAAGTGATTCGCCTCCTCATCCAGTTTCAGGACGCACATCTTCTGCATCATCTACTGGGACATCTCGTAAGACTAGTCGCCGTATAAATAATGGAGCAGATGTTGGCACAAATCAACGAGGAACAACTCGTGGGAAATCTCGTGGAAGTAGGGGCCCTCGTTTGGGACTTCGTGGATCGGCTCGTGGAAGAGTTTCTTCCACCGCTCTTGGAACAAATACTGCAGAAAATAACAACCGGCGTGGTTCGACACAAAATTCCGGAGCCGCTGGACGATCAATTCCGGGAAGAGGGAGACCTCGTGGAAGAGCTCGCGGAAGTGTACCAATTCGTGGTCAGCGAATGAAGAAAGATTAATAAAACGTTGAACAAAATGTTATTAATAAAATTTGAATTGAAAAAAAAATTGAATCTCTGTTCAGCCAAAAATTTTGTTCACCCAAACTTTGATTTGAGAATACCGCACTTTGCTTTCGGAACTCTAATTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTTTTGGGACCTCTATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTTTGGGACCTCTATTTTTTTTGGGACCTCTATTTTTTTGGGACCTCTAATTTTTTTTTTGCCCTCTATTTTTTTTGGACCTCTATTTTTTTTTTGGGACCTCTATTTTTTTTTGGGACCTCTAAACTAGAATAGAGCCGAGAATCTTGCTTCACTGCGTCTCCCTCTCTCCACACGCTATTTTGCGTCAAAACTTCAAAAGCTCACAACTCCCTTCGAAATCTAGCCAGCTAATTTTTTGATCATTGAAATC</canonical>
            <polymorphic>CTCTCCTGTGAGTACTAGTGTTCGTGGAACATCTCGCGGCAGATCCAGAAGTCGTGGTCGAAGACTCCATCAATCAACACCGTCATCGCTTTCTCAGAATTCCCTAAACCGCACTATTGGAGTTTCTGCGACAGAAAGTGATTCGCCTCCTCATCCAGTTTCAGGACGCACATCTTCTGCATCATCTACTGGGACATCTCGTAAGACTAGTCGCCGTATAAATAATGGAGCAGATGTTGGCACAAATCAACGAGGAACAACTCGTGGGAAATCTCGTGGAAGTAGGGGCCCTCGTTTGGGACTTCGTGGATCGGCTCGTGGAAGAGTTTCTTCCACCGCTCTTGGAACAAATACTGCAGAAAATAACAACCGGCGTGGTTCGACACAAAATTCCGGAGCCGCTGGACGATCAATTCCGGGAAGAGGGAGACCTCGTGGAAGAGCTCGCGGAAGTGTACCAATTCGTGGTCAGCGAATGAAGAAAGATTAATAAAACGTTRAACAAAATGTTATTAATAAAATTTGAATTGAAAAAAAAATTGAATCTCTGTTCAGCCAAAAATTTTGTTCACCCAAACTTTGATTTGAGAATACCGCACTTTGCTTTCGGAACTCTAATTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTTTTGGGACCTCTATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTTTGGGACCTCTATTTTTTTTGGGACCTCTATTTTTTTGGGACCTCTAATTTTTTTTTTGCCCTCTATTTTTTTTGGACCTCTATTTTTTTTTTGGGACCTCTATTTTTTTTTGGGACCTCTAAACTAGAATAGAGCCGAGAATCTTGCTTCACTGCGTCTCCCTCTCTCCACACGCTATTTTGCGTCAAAACTTCAAAAGCTCACAACTCCCTTCGAAATCTAGCCAGCTAATTTTTTGATCATTGAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAACAAATACTGCAGAAAATAA</pcr_primer_p1>
		<pcr_primer_p2>AATCAAAGTTTGGGTGAACA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GGAACAAATACTGCAGAAAATAACAACCGGCGTGGTTCGACACAAAATTCCGGAGCCGCTGGACGATCAATTCCGGGAAGAGGGAGACCTCGTGGAAGAGCTCGCGGAAGTGTACCAATTCGTGGTCAGCGAATGAAGAAAGATTAATAAAACGTTGAACAAAATGTTATTAATAAAATTTGAATTGAAAAAAAAATTGAATCTCTGTTCAGCCAAAAATTTTGTTCACCCAAACTTTGATT</canonical_amplicon>
		<polymorphic_amplicon>GGAACAAATACTGCAGAAAATAACAACCGGCGTGGTTCGACACAAAATTCCGGAGCCGCTGGACGATCAATTCCGGGAAGAGGGAGACCTCGTGGAAGAGCTCGCGGAAGTGTACCAATTCGTGGTCAGCGAATGAAGAAAGATTAATAAAACGTTRAACAAAATGTTATTAATAAAATTTGAATTGAAAAAAAAATTGAATCTCTGTTCAGCCAAAAATTTTGTTCACCCAAACTTTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28669</snp_id>
        <super_contig>c004001476.Contig1</super_contig>
        <contig_pos>13793</contig_pos>
        <strand>+</strand>
        <context>ATTTGAATTG[C/G]AWAAAAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAAAGATTAATAAAACGTTGAACAAAATGTTATTAATAAAATTTGAATTG</left_flank>
        <right_flank>AAAAAAAATTGAATCTCTGTTCAGCCAAAAATTTTGTTCACCCAAACTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCGCGGCAGATCCAGAAGTCGTGGTCGAAGACTCCATCAATCAACACCGTCATCGCTTTCTCAGAATTCCCTAAACCGCACTATTGGAGTTTCTGCGACAGAAAGTGATTCGCCTCCTCATCCAGTTTCAGGACGCACATCTTCTGCATCATCTACTGGGACATCTCGTAAGACTAGTCGCCGTATAAATAATGGAGCAGATGTTGGCACAAATCAACGAGGAACAACTCGTGGGAAATCTCGTGGAAGTAGGGGCCCTCGTTTGGGACTTCGTGGATCGGCTCGTGGAAGAGTTTCTTCCACCGCTCTTGGAACAAATACTGCAGAAAATAACAACCGGCGTGGTTCGACACAAAATTCCGGAGCCGCTGGACGATCAATTCCGGGAAGAGGGAGACCTCGTGGAAGAGCTCGCGGAAGTGTACCAATTCGTGGTCAGCGAATGAAGAAAGATTAATAAAACGTTGAACAAAATGTTATTAATAAAATTTGAATTGAAAAAAAAATTGAATCTCTGTTCAGCCAAAAATTTTGTTCACCCAAACTTTGATTTGAGAATACCGCACTTTGCTTTCGGAACTCTAATTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTTTTGGGACCTCTATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTTTGGGACCTCTATTTTTTTTGGGACCTCTATTTTTTTGGGACCTCTAATTTTTTTTTTGCCCTCTATTTTTTTTGGACCTCTATTTTTTTTTTGGGACCTCTATTTTTTTTTGGGACCTCTAAACTAGAATAGAGCCGAGAATCTTGCTTCACTGCGTCTCCCTCTCTCCACACGCTATTTTGCGTCAAAACTTCAAAAGCTCACAACTCCCTTCGAAATCTAGCCAGCTAATTTTTTGATCATTGAAATCAAAAAGAACTGGGAATTTTTTTTCGAAATAT</canonical>
            <polymorphic>TCTCGCGGCAGATCCAGAAGTCGTGGTCGAAGACTCCATCAATCAACACCGTCATCGCTTTCTCAGAATTCCCTAAACCGCACTATTGGAGTTTCTGCGACAGAAAGTGATTCGCCTCCTCATCCAGTTTCAGGACGCACATCTTCTGCATCATCTACTGGGACATCTCGTAAGACTAGTCGCCGTATAAATAATGGAGCAGATGTTGGCACAAATCAACGAGGAACAACTCGTGGGAAATCTCGTGGAAGTAGGGGCCCTCGTTTGGGACTTCGTGGATCGGCTCGTGGAAGAGTTTCTTCCACCGCTCTTGGAACAAATACTGCAGAAAATAACAACCGGCGTGGTTCGACACAAAATTCCGGAGCCGCTGGACGATCAATTCCGGGAAGAGGGAGACCTCGTGGAAGAGCTCGCGGAAGTGTACCAATTCGTGGTCAGCGAATGAAGAAAGATTAATAAAACGTTGAACAAAATGTTATTAATAAAATTTGAATTGSAAAAAAAATTGAATCTCTGTTCAGCCAAAAATTTTGTTCACCCAAACTTTGATTTGAGAATACCGCACTTTGCTTTCGGAACTCTAATTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTTTTGGGACCTCTATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTTTGGGACCTCTATTTTTTTTGGGACCTCTATTTTTTTGGGACCTCTAATTTTTTTTTTGCCCTCTATTTTTTTTGGACCTCTATTTTTTTTTTGGGACCTCTATTTTTTTTTGGGACCTCTAAACTAGAATAGAGCCGAGAATCTTGCTTCACTGCGTCTCCCTCTCTCCACACGCTATTTTGCGTCAAAACTTCAAAAGCTCACAACTCCCTTCGAAATCTAGCCAGCTAATTTTTTGATCATTGAAATCAAAAAGAACTGGGAATTTTTTTTCGAAATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAACAAATACTGCAGAAAATAA</pcr_primer_p1>
		<pcr_primer_p2>AATCAAAGTTTGGGTGAACA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GGAACAAATACTGCAGAAAATAACAACCGGCGTGGTTCGACACAAAATTCCGGAGCCGCTGGACGATCAATTCCGGGAAGAGGGAGACCTCGTGGAAGAGCTCGCGGAAGTGTACCAATTCGTGGTCAGCGAATGAAGAAAGATTAATAAAACGTTGAACAAAATGTTATTAATAAAATTTGAATTGAAAAAAAAATTGAATCTCTGTTCAGCCAAAAATTTTGTTCACCCAAACTTTGATT</canonical_amplicon>
		<polymorphic_amplicon>GGAACAAATACTGCAGAAAATAACAACCGGCGTGGTTCGACACAAAATTCCGGAGCCGCTGGACGATCAATTCCGGGAAGAGGGAGACCTCGTGGAAGAGCTCGCGGAAGTGTACCAATTCGTGGTCAGCGAATGAAGAAAGATTAATAAAACGTTGAACAAAATGTTATTAATAAAATTTGAATTGSAAAAAAAATTGAATCTCTGTTCAGCCAAAAATTTTGTTCACCCAAACTTTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28670</snp_id>
        <super_contig>c004001476.Contig1</super_contig>
        <contig_pos>13795</contig_pos>
        <strand>+</strand>
        <context>TTGAATTGSA[A/T]AAAAAATTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGATTAATAAAACGTTGAACAAAATGTTATTAATAAAATTTGAATTGAA</left_flank>
        <right_flank>AAAAAATTGAATCTCTGTTCAGCCAAAAATTTTGTTCACCCAAACTTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGCGGCAGATCCAGAAGTCGTGGTCGAAGACTCCATCAATCAACACCGTCATCGCTTTCTCAGAATTCCCTAAACCGCACTATTGGAGTTTCTGCGACAGAAAGTGATTCGCCTCCTCATCCAGTTTCAGGACGCACATCTTCTGCATCATCTACTGGGACATCTCGTAAGACTAGTCGCCGTATAAATAATGGAGCAGATGTTGGCACAAATCAACGAGGAACAACTCGTGGGAAATCTCGTGGAAGTAGGGGCCCTCGTTTGGGACTTCGTGGATCGGCTCGTGGAAGAGTTTCTTCCACCGCTCTTGGAACAAATACTGCAGAAAATAACAACCGGCGTGGTTCGACACAAAATTCCGGAGCCGCTGGACGATCAATTCCGGGAAGAGGGAGACCTCGTGGAAGAGCTCGCGGAAGTGTACCAATTCGTGGTCAGCGAATGAAGAAAGATTAATAAAACGTTGAACAAAATGTTATTAATAAAATTTGAATTGAAAAAAAAATTGAATCTCTGTTCAGCCAAAAATTTTGTTCACCCAAACTTTGATTTGAGAATACCGCACTTTGCTTTCGGAACTCTAATTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTTTTGGGACCTCTATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTTTGGGACCTCTATTTTTTTTGGGACCTCTATTTTTTTGGGACCTCTAATTTTTTTTTTGCCCTCTATTTTTTTTGGACCTCTATTTTTTTTTTGGGACCTCTATTTTTTTTTGGGACCTCTAAACTAGAATAGAGCCGAGAATCTTGCTTCACTGCGTCTCCCTCTCTCCACACGCTATTTTGCGTCAAAACTTCAAAAGCTCACAACTCCCTTCGAAATCTAGCCAGCTAATTTTTTGATCATTGAAATCAAAAAGAACTGGGAATTTTTTTTCGAAATATAG</canonical>
            <polymorphic>TCGCGGCAGATCCAGAAGTCGTGGTCGAAGACTCCATCAATCAACACCGTCATCGCTTTCTCAGAATTCCCTAAACCGCACTATTGGAGTTTCTGCGACAGAAAGTGATTCGCCTCCTCATCCAGTTTCAGGACGCACATCTTCTGCATCATCTACTGGGACATCTCGTAAGACTAGTCGCCGTATAAATAATGGAGCAGATGTTGGCACAAATCAACGAGGAACAACTCGTGGGAAATCTCGTGGAAGTAGGGGCCCTCGTTTGGGACTTCGTGGATCGGCTCGTGGAAGAGTTTCTTCCACCGCTCTTGGAACAAATACTGCAGAAAATAACAACCGGCGTGGTTCGACACAAAATTCCGGAGCCGCTGGACGATCAATTCCGGGAAGAGGGAGACCTCGTGGAAGAGCTCGCGGAAGTGTACCAATTCGTGGTCAGCGAATGAAGAAAGATTAATAAAACGTTGAACAAAATGTTATTAATAAAATTTGAATTGAAWAAAAAATTGAATCTCTGTTCAGCCAAAAATTTTGTTCACCCAAACTTTGATTTGAGAATACCGCACTTTGCTTTCGGAACTCTAATTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTTTTGGGACCTCTATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTTTGGGACCTCTATTTTTTTTGGGACCTCTATTTTTTTGGGACCTCTAATTTTTTTTTTGCCCTCTATTTTTTTTGGACCTCTATTTTTTTTTTGGGACCTCTATTTTTTTTTGGGACCTCTAAACTAGAATAGAGCCGAGAATCTTGCTTCACTGCGTCTCCCTCTCTCCACACGCTATTTTGCGTCAAAACTTCAAAAGCTCACAACTCCCTTCGAAATCTAGCCAGCTAATTTTTTGATCATTGAAATCAAAAAGAACTGGGAATTTTTTTTCGAAATATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAACAAATACTGCAGAAAATAA</pcr_primer_p1>
		<pcr_primer_p2>AATCAAAGTTTGGGTGAACA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GGAACAAATACTGCAGAAAATAACAACCGGCGTGGTTCGACACAAAATTCCGGAGCCGCTGGACGATCAATTCCGGGAAGAGGGAGACCTCGTGGAAGAGCTCGCGGAAGTGTACCAATTCGTGGTCAGCGAATGAAGAAAGATTAATAAAACGTTGAACAAAATGTTATTAATAAAATTTGAATTGAAAAAAAAATTGAATCTCTGTTCAGCCAAAAATTTTGTTCACCCAAACTTTGATT</canonical_amplicon>
		<polymorphic_amplicon>GGAACAAATACTGCAGAAAATAACAACCGGCGTGGTTCGACACAAAATTCCGGAGCCGCTGGACGATCAATTCCGGGAAGAGGGAGACCTCGTGGAAGAGCTCGCGGAAGTGTACCAATTCGTGGTCAGCGAATGAAGAAAGATTAATAAAACGTTGAACAAAATGTTATTAATAAAATTTGAATTGAAWAAAAAATTGAATCTCTGTTCAGCCAAAAATTTTGTTCACCCAAACTTTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28671</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>31944</contig_pos>
        <strand></strand>
        <context>tttgaaaagt[G/T]tagagtttga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGTAGCTCTTTTCATGTTCTACAGTATCCAATGAGAATTTTTGAAAAGT</left_flank>
        <right_flank>TAGAGTTTGAAGGGAGCTAAATCAATCTGATGCATTAGTTATGACGCATA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTGAGCTACGCAATAGCAAGCTCCGGCTGTTGACCGGTAGTGTATAAGTCATCTTCGTTTACTTGTAACTCGCTTCAAACTCAAGATTTTTAGAAAACTCAAAATGGCAAAAATAGAGCTTGAAAAGAGCTACAAAATGATCAAAAACATAACCACCTTCCAAATTTCGATACTTTGAAAAAATCGATTTTAAATGCCTTCCCAATTTTTGAACCCAGTCATGTTATTTAACATTCTGTAGCTCTTTTCATGTTCTACAGTATCCAACAAGAATTTTCGAACAGTTCAGAGTTTGAAGGGAGCTGAAAAGAGCTACAAAATGGTATACAATTTCTGTAGTTTCGAATGCTTCAAAGTTTCCAAAAATTGAAAAAAAAAATTTTTGAAAATTTTTTTTCCAATTTTTGCAATTATATGAAAATAAAAAATAATCAAATTATATATTATTTTGTAGCTCTTTTCATGTTCTACAGTATCCAATGAGAATTTTTGAAAAGTGTAGAGTTTGAAGGGAGCTAAATCAATCTGATGCATTAGTTATGACGCATAACAAGTATCACCTGCTGTTGTTTTTCTAGGTTTTTTTTTGCTTTTCTTTAATTCATCGATCCGTTATTTCATTTTTTTTTCCAAAAAACGCGTTCATGATATGAACTTCATATTAGATTTCACCTATCCCAAACTGCTAATCCTCTACTATCATTTGATAGGAATTTTATCAGTTTTACTAAACACCCTTGGAATTTATCTCCTTCAAACGCAATGCAAAAAACTTGGCACTTCTCGTTATTGGTTATTATCTTATCAGGTCCTGTGTTATATCACTGATATCTTTTTTACCCTTCTAATGCAACCGGTCCCTTTGTACCCGTTGGTGGCAGTGTATACTGTAGGAGTACTGTCAGATTGGTTTGGCATACCACCTGTGGCTTTGAGTTATATCGTTTGTGATTTGATTGCTGTGCAGTTTACATTTCTCGCTGTTTCATTTATCAAGAA</canonical>
            <polymorphic>GGTGAGCTACGCAATAGCAAGCTCCGGCTGTTGACCGGTAGTGTATAAGTCATCTTCGTTTACTTGTAACTCGCTTCAAACTCAAGATTTTTAGAAAACTCAAAATGGCAAAAATAGAGCTTGAAAAGAGCTACAAAATGATCAAAAACATAACCACCTTCCAAATTTCGATACTTTGAAAAAATCGATTTTAAATGCCTTCCCAATTTTTGAACCCAGTCATGTTATTTAACATTCTGTAGCTCTTTTCATGTTCTACAGTATCCAACAAGAATTTTCGAACAGTTCAGAGTTTGAAGGGAGCTGAAAAGAGCTACAAAATGGTATACAATTTCTGTAGTTTCGAATGCTTCAAAGTTTCCAAAAATTGAAAAAAAAAATTTTTGAAAATTTTTTTTCCAATTTTTGCAATTATATGAAAATAAAAAATAATCAAATTATATATTATTTTGTAGCTCTTTTCATGTTCTACAGTATCCAATGAGAATTTTTGAAAAGTKTAGAGTTTGAAGGGAGCTAAATCAATCTGATGCATTAGTTATGACGCATAACAAGTATCACCTGCTGTTGTTTTTCTAGGTTTTTTTTTGCTTTTCTTTAATTCATCGATCCGTTATTTCATTTTTTTTTCCAAAAAACGCGTTCATGATATGAACTTCATATTAGATTTCACCTATCCCAAACTGCTAATCCTCTACTATCATTTGATAGGAATTTTATCAGTTTTACTAAACACCCTTGGAATTTATCTCCTTCAAACGCAATGCAAAAAACTTGGCACTTCTCGTTATTGGTTATTATCTTATCAGGTCCTGTGTTATATCACTGATATCTTTTTTACCCTTCTAATGCAACCGGTCCCTTTGTACCCGTTGGTGGCAGTGTATACTGTAGGAGTACTGTCAGATTGGTTTGGCATACCACCTGTGGCTTTGAGTTATATCGTTTGTGATTTGATTGCTGTGCAGTTTACATTTCTCGCTGTTTCATTTATCAAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>344 113 112 63 60 53 45 39 39 37 35 22 14 8 6 6 4</canonical_bands>
                <polymorphic_bands>404 113 112 63 53 45 39 39 37 35 22 14 8 6 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACAATTTCTGTAGTTTCGAATG</pcr_primer_p1>
		<pcr_primer_p2>AAAACAACAGCAGGTGATACTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATACAATTTCTGTAGTTTCGAATGCTTCAAAGTTTCCAAAAATTGAAAAAAAAAATTTTTGAAAATTTTTTTTCCAATTTTTGCAATTATATGAAAATAAAAAATAATCAAATTATATATTATTTTGTAGCTCTTTTCATGTTCTACAGTATCCAATGAGAATTTTTGAAAAGTGTAGAGTTTGAAGGGAGCTAAATCAATCTGATGCATTAGTTATGACGCATAACAAGTATCACCTGCTGTTGTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATACAATTTCTGTAGTTTCGAATGCTTCAAAGTTTCCAAAAATTGAAAAAAAAAATTTTTGAAAATTTTTTTTCCAATTTTTGCAATTATATGAAAATAAAAAATAATCAAATTATATATTATTTTGTAGCTCTTTTCATGTTCTACAGTATCCAATGAGAATTTTTGAAAAGTKTAGAGTTTGAAGGGAGCTAAATCAATCTGATGCATTAGTTATGACGCATAACAAGTATCACCTGCTGTTGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28672</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>31989</contig_pos>
        <strand>+</strand>
        <context>TTAGTTATGA[C/T]GCATAACAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGTGTAGAGTTTGAAGGGAGCTAAATCAATCTGATGCATTAGTTATGA</left_flank>
        <right_flank>GCATAACAAGTATCACCTGCTGTTGTTTTTCTAGGTTTTTTTTTGCTTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGTCATCTTCGTTTACTTGTAACTCGCTTCAAACTCAAGATTTTTAGAAAACTCAAAATGGCAAAAATAGAGCTTGAAAAGAGCTACAAAATGATCAAAAACATAACCACCTTCCAAATTTCGATACTTTGAAAAAATCGATTTTAAATGCCTTCCCAATTTTTGAACCCAGTCATGTTATTTAACATTCTGTAGCTCTTTTCATGTTCTACAGTATCCAACAAGAATTTTCGAACAGTTCAGAGTTTGAAGGGAGCTGAAAAGAGCTACAAAATGGTATACAATTTCTGTAGTTTCGAATGCTTCAAAGTTTCCAAAAATTGAAAAAAAAAATTTTTGAAAATTTTTTTTCCAATTTTTGCAATTATATGAAAATAAAAAATAATCAAATTATATATTATTTTGTAGCTCTTTTCATGTTCTACAGTATCCAATGAGAATTTTTGAAAAGTGTAGAGTTTGAAGGGAGCTAAATCAATCTGATGCATTAGTTATGACGCATAACAAGTATCACCTGCTGTTGTTTTTCTAGGTTTTTTTTTGCTTTTCTTTAATTCATCGATCCGTTATTTCATTTTTTTTTCCAAAAAACGCGTTCATGATATGAACTTCATATTAGATTTCACCTATCCCAAACTGCTAATCCTCTACTATCATTTGATAGGAATTTTATCAGTTTTACTAAACACCCTTGGAATTTATCTCCTTCAAACGCAATGCAAAAAACTTGGCACTTCTCGTTATTGGTTATTATCTTATCAGGTCCTGTGTTATATCACTGATATCTTTTTTACCCTTCTAATGCAACCGGTCCCTTTGTACCCGTTGGTGGCAGTGTATACTGTAGGAGTACTGTCAGATTGGTTTGGCATACCACCTGTGGCTTTGAGTTATATCGTTTGTGATTTGATTGCTGTGCAGTTTACATTTCTCGCTGTTTCATTTATCAAGAAACATAGAACTGTGGCATCGTTATCCAACTCGTTGGCTTTTCCAAA</canonical>
            <polymorphic>TAAGTCATCTTCGTTTACTTGTAACTCGCTTCAAACTCAAGATTTTTAGAAAACTCAAAATGGCAAAAATAGAGCTTGAAAAGAGCTACAAAATGATCAAAAACATAACCACCTTCCAAATTTCGATACTTTGAAAAAATCGATTTTAAATGCCTTCCCAATTTTTGAACCCAGTCATGTTATTTAACATTCTGTAGCTCTTTTCATGTTCTACAGTATCCAACAAGAATTTTCGAACAGTTCAGAGTTTGAAGGGAGCTGAAAAGAGCTACAAAATGGTATACAATTTCTGTAGTTTCGAATGCTTCAAAGTTTCCAAAAATTGAAAAAAAAAATTTTTGAAAATTTTTTTTCCAATTTTTGCAATTATATGAAAATAAAAAATAATCAAATTATATATTATTTTGTAGCTCTTTTCATGTTCTACAGTATCCAATGAGAATTTTTGAAAAGTGTAGAGTTTGAAGGGAGCTAAATCAATCTGATGCATTAGTTATGAYGCATAACAAGTATCACCTGCTGTTGTTTTTCTAGGTTTTTTTTTGCTTTTCTTTAATTCATCGATCCGTTATTTCATTTTTTTTTCCAAAAAACGCGTTCATGATATGAACTTCATATTAGATTTCACCTATCCCAAACTGCTAATCCTCTACTATCATTTGATAGGAATTTTATCAGTTTTACTAAACACCCTTGGAATTTATCTCCTTCAAACGCAATGCAAAAAACTTGGCACTTCTCGTTATTGGTTATTATCTTATCAGGTCCTGTGTTATATCACTGATATCTTTTTTACCCTTCTAATGCAACCGGTCCCTTTGTACCCGTTGGTGGCAGTGTATACTGTAGGAGTACTGTCAGATTGGTTTGGCATACCACCTGTGGCTTTGAGTTATATCGTTTGTGATTTGATTGCTGTGCAGTTTACATTTCTCGCTGTTTCATTTATCAAGAAACATAGAACTGTGGCATCGTTATCCAACTCGTTGGCTTTTCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTCGAATGCTTCAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>GATGAATTAAAGAAAAGCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>GTTTCGAATGCTTCAAAGTTTCCAAAAATTGAAAAAAAAAATTTTTGAAAATTTTTTTTCCAATTTTTGCAATTATATGAAAATAAAAAATAATCAAATTATATATTATTTTGTAGCTCTTTTCATGTTCTACAGTATCCAATGAGAATTTTTGAAAAGTGTAGAGTTTGAAGGGAGCTAAATCAATCTGATGCATTAGTTATGACGCATAACAAGTATCACCTGCTGTTGTTTTTCTAGGTTTTTTTTTGCTTTTCTTTAATTCATC</canonical_amplicon>
		<polymorphic_amplicon>GTTTCGAATGCTTCAAAGTTTCCAAAAATTGAAAAAAAAAATTTTTGAAAATTTTTTTTCCAATTTTTGCAATTATATGAAAATAAAAAATAATCAAATTATATATTATTTTGTAGCTCTTTTCATGTTCTACAGTATCCAATGAGAATTTTTGAAAAGTGTAGAGTTTGAAGGGAGCTAAATCAATCTGATGCATTAGTTATGAYGCATAACAAGTATCACCTGCTGTTGTTTTTCTAGGTTTTTTTTTGCTTTTCTTTAATTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28673</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>32187</contig_pos>
        <strand>+</strand>
        <context>ACACCCTTGG[A/T]ATTTATCTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCTACTATCATTTGATAGGAATTTTATCAGTTTTACTAAACACCCTTGG</left_flank>
        <right_flank>ATTTATCTCCTTCAAACGCAATGCAAAAAACTTGGCACTTCTCGTTATTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTTTCATGTTCTACAGTATCCAACAAGAATTTTCGAACAGTTCAGAGTTTGAAGGGAGCTGAAAAGAGCTACAAAATGGTATACAATTTCTGTAGTTTCGAATGCTTCAAAGTTTCCAAAAATTGAAAAAAAAAATTTTTGAAAATTTTTTTTCCAATTTTTGCAATTATATGAAAATAAAAAATAATCAAATTATATATTATTTTGTAGCTCTTTTCATGTTCTACAGTATCCAATGAGAATTTTTGAAAAGTGTAGAGTTTGAAGGGAGCTAAATCAATCTGATGCATTAGTTATGACGCATAACAAGTATCACCTGCTGTTGTTTTTCTAGGTTTTTTTTTGCTTTTCTTTAATTCATCGATCCGTTATTTCATTTTTTTTTCCAAAAAACGCGTTCATGATATGAACTTCATATTAGATTTCACCTATCCCAAACTGCTAATCCTCTACTATCATTTGATAGGAATTTTATCAGTTTTACTAAACACCCTTGGAATTTATCTCCTTCAAACGCAATGCAAAAAACTTGGCACTTCTCGTTATTGGTTATTATCTTATCAGGTCCTGTGTTATATCACTGATATCTTTTTTACCCTTCTAATGCAACCGGTCCCTTTGTACCCGTTGGTGGCAGTGTATACTGTAGGAGTACTGTCAGATTGGTTTGGCATACCACCTGTGGCTTTGAGTTATATCGTTTGTGATTTGATTGCTGTGCAGTTTACATTTCTCGCTGTTTCATTTATCAAGAAACATAGAACTGTGGCATCGTTATCCAACTCGTTGGCTTTTCCAAAACATTCGGATATTGTGATTCTGGTTGCATTGGTTTTGGGGGTTGTACTGGGAGATTCTTATGTGTTATCAATGCGTTTATCCAGAGAGGATCAGTGGAAACTTGTTAATGAGGTTTTTAAGAGAAATATAAGGTCCATAAGGCCTCAAGAGCTACAAGGTGGCTAGAGGCCTCAAAACAGTCAACTTCAAATTATTAT</canonical>
            <polymorphic>TCTTTTCATGTTCTACAGTATCCAACAAGAATTTTCGAACAGTTCAGAGTTTGAAGGGAGCTGAAAAGAGCTACAAAATGGTATACAATTTCTGTAGTTTCGAATGCTTCAAAGTTTCCAAAAATTGAAAAAAAAAATTTTTGAAAATTTTTTTTCCAATTTTTGCAATTATATGAAAATAAAAAATAATCAAATTATATATTATTTTGTAGCTCTTTTCATGTTCTACAGTATCCAATGAGAATTTTTGAAAAGTGTAGAGTTTGAAGGGAGCTAAATCAATCTGATGCATTAGTTATGACGCATAACAAGTATCACCTGCTGTTGTTTTTCTAGGTTTTTTTTTGCTTTTCTTTAATTCATCGATCCGTTATTTCATTTTTTTTTCCAAAAAACGCGTTCATGATATGAACTTCATATTAGATTTCACCTATCCCAAACTGCTAATCCTCTACTATCATTTGATAGGAATTTTATCAGTTTTACTAAACACCCTTGGWATTTATCTCCTTCAAACGCAATGCAAAAAACTTGGCACTTCTCGTTATTGGTTATTATCTTATCAGGTCCTGTGTTATATCACTGATATCTTTTTTACCCTTCTAATGCAACCGGTCCCTTTGTACCCGTTGGTGGCAGTGTATACTGTAGGAGTACTGTCAGATTGGTTTGGCATACCACCTGTGGCTTTGAGTTATATCGTTTGTGATTTGATTGCTGTGCAGTTTACATTTCTCGCTGTTTCATTTATCAAGAAACATAGAACTGTGGCATCGTTATCCAACTCGTTGGCTTTTCCAAAACATTCGGATATTGTGATTCTGGTTGCATTGGTTTTGGGGGTTGTACTGGGAGATTCTTATGTGTTATCAATGCGTTTATCCAGAGAGGATCAGTGGAAACTTGTTAATGAGGTTTTTAAGAGAAATATAAGGTCCATAAGGCCTCAAGAGCTACAAGGTGGCTAGAGGCCTCAAAACAGTCAACTTCAAATTATTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>501 227 106 97 30 29 10</canonical_bands>
                <polymorphic_bands>531 227 106 97 29 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>492 114 113 57 50 36 30 29 26 13 12 10 9 9</canonical_bands>
                <polymorphic_bands>522 114 113 57 50 36 29 26 13 12 10 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTAGATTTCACCTATCCCAAAC</pcr_primer_p1>
		<pcr_primer_p2>ACCAATCTGACAGTACTCCTACA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTAGATTTCACCTATCCCAAACTGCTAATCCTCTACTATCATTTGATAGGAATTTTATCAGTTTTACTAAACACCCTTGGAATTTATCTCCTTCAAACGCAATGCAAAAAACTTGGCACTTCTCGTTATTGGTTATTATCTTATCAGGTCCTGTGTTATATCACTGATATCTTTTTTACCCTTCTAATGCAACCGGTCCCTTTGTACCCGTTGGTGGCAGTGTATACTGTAGGAGTACTGTCAGATTGGT</canonical_amplicon>
		<polymorphic_amplicon>ATTAGATTTCACCTATCCCAAACTGCTAATCCTCTACTATCATTTGATAGGAATTTTATCAGTTTTACTAAACACCCTTGGWATTTATCTCCTTCAAACGCAATGCAAAAAACTTGGCACTTCTCGTTATTGGTTATTATCTTATCAGGTCCTGTGTTATATCACTGATATCTTTTTTACCCTTCTAATGCAACCGGTCCCTTTGTACCCGTTGGTGGCAGTGTATACTGTAGGAGTACTGTCAGATTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28674</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>32228</contig_pos>
        <strand>+</strand>
        <context>CTTGGCACTT[C/T]TCGTTATTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACCCTTGGAATTTATCTCCTTCAAACGCAATGCAAAAAACTTGGCACTT</left_flank>
        <right_flank>TCGTTATTGGTTATTATCTTATCAGGTCCTGTGTTATATCACTGATATCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCAGAGTTTGAAGGGAGCTGAAAAGAGCTACAAAATGGTATACAATTTCTGTAGTTTCGAATGCTTCAAAGTTTCCAAAAATTGAAAAAAAAAATTTTTGAAAATTTTTTTTCCAATTTTTGCAATTATATGAAAATAAAAAATAATCAAATTATATATTATTTTGTAGCTCTTTTCATGTTCTACAGTATCCAATGAGAATTTTTGAAAAGTGTAGAGTTTGAAGGGAGCTAAATCAATCTGATGCATTAGTTATGACGCATAACAAGTATCACCTGCTGTTGTTTTTCTAGGTTTTTTTTTGCTTTTCTTTAATTCATCGATCCGTTATTTCATTTTTTTTTCCAAAAAACGCGTTCATGATATGAACTTCATATTAGATTTCACCTATCCCAAACTGCTAATCCTCTACTATCATTTGATAGGAATTTTATCAGTTTTACTAAACACCCTTGGAATTTATCTCCTTCAAACGCAATGCAAAAAACTTGGCACTTCTCGTTATTGGTTATTATCTTATCAGGTCCTGTGTTATATCACTGATATCTTTTTTACCCTTCTAATGCAACCGGTCCCTTTGTACCCGTTGGTGGCAGTGTATACTGTAGGAGTACTGTCAGATTGGTTTGGCATACCACCTGTGGCTTTGAGTTATATCGTTTGTGATTTGATTGCTGTGCAGTTTACATTTCTCGCTGTTTCATTTATCAAGAAACATAGAACTGTGGCATCGTTATCCAACTCGTTGGCTTTTCCAAAACATTCGGATATTGTGATTCTGGTTGCATTGGTTTTGGGGGTTGTACTGGGAGATTCTTATGTGTTATCAATGCGTTTATCCAGAGAGGATCAGTGGAAACTTGTTAATGAGGTTTTTAAGAGAAATATAAGGTCCATAAGGCCTCAAGAGCTACAAGGTGGCTAGAGGCCTCAAAACAGTCAACTTCAAATTATTATATCTCGGTTACTGTAAGAGATATCAAAATCTGTCAACTGAC</canonical>
            <polymorphic>GTTCAGAGTTTGAAGGGAGCTGAAAAGAGCTACAAAATGGTATACAATTTCTGTAGTTTCGAATGCTTCAAAGTTTCCAAAAATTGAAAAAAAAAATTTTTGAAAATTTTTTTTCCAATTTTTGCAATTATATGAAAATAAAAAATAATCAAATTATATATTATTTTGTAGCTCTTTTCATGTTCTACAGTATCCAATGAGAATTTTTGAAAAGTGTAGAGTTTGAAGGGAGCTAAATCAATCTGATGCATTAGTTATGACGCATAACAAGTATCACCTGCTGTTGTTTTTCTAGGTTTTTTTTTGCTTTTCTTTAATTCATCGATCCGTTATTTCATTTTTTTTTCCAAAAAACGCGTTCATGATATGAACTTCATATTAGATTTCACCTATCCCAAACTGCTAATCCTCTACTATCATTTGATAGGAATTTTATCAGTTTTACTAAACACCCTTGGAATTTATCTCCTTCAAACGCAATGCAAAAAACTTGGCACTTYTCGTTATTGGTTATTATCTTATCAGGTCCTGTGTTATATCACTGATATCTTTTTTACCCTTCTAATGCAACCGGTCCCTTTGTACCCGTTGGTGGCAGTGTATACTGTAGGAGTACTGTCAGATTGGTTTGGCATACCACCTGTGGCTTTGAGTTATATCGTTTGTGATTTGATTGCTGTGCAGTTTACATTTCTCGCTGTTTCATTTATCAAGAAACATAGAACTGTGGCATCGTTATCCAACTCGTTGGCTTTTCCAAAACATTCGGATATTGTGATTCTGGTTGCATTGGTTTTGGGGGTTGTACTGGGAGATTCTTATGTGTTATCAATGCGTTTATCCAGAGAGGATCAGTGGAAACTTGTTAATGAGGTTTTTAAGAGAAATATAAGGTCCATAAGGCCTCAAGAGCTACAAGGTGGCTAGAGGCCTCAAAACAGTCAACTTCAAATTATTATATCTCGGTTACTGTAAGAGATATCAAAATCTGTCAACTGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTAGATTTCACCTATCCCAAAC</pcr_primer_p1>
		<pcr_primer_p2>ACCAATCTGACAGTACTCCTACA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTAGATTTCACCTATCCCAAACTGCTAATCCTCTACTATCATTTGATAGGAATTTTATCAGTTTTACTAAACACCCTTGGAATTTATCTCCTTCAAACGCAATGCAAAAAACTTGGCACTTCTCGTTATTGGTTATTATCTTATCAGGTCCTGTGTTATATCACTGATATCTTTTTTACCCTTCTAATGCAACCGGTCCCTTTGTACCCGTTGGTGGCAGTGTATACTGTAGGAGTACTGTCAGATTGGT</canonical_amplicon>
		<polymorphic_amplicon>ATTAGATTTCACCTATCCCAAACTGCTAATCCTCTACTATCATTTGATAGGAATTTTATCAGTTTTACTAAACACCCTTGGAATTTATCTCCTTCAAACGCAATGCAAAAAACTTGGCACTTYTCGTTATTGGTTATTATCTTATCAGGTCCTGTGTTATATCACTGATATCTTTTTTACCCTTCTAATGCAACCGGTCCCTTTGTACCCGTTGGTGGCAGTGTATACTGTAGGAGTACTGTCAGATTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28675</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>32409</contig_pos>
        <strand>+</strand>
        <context>TGATTGCTGT[A/G]CAGTTTACAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGCATACCACCTGTGGCTTTGAGTTATATCGTTTGTGATTTGATTGCTGT</left_flank>
        <right_flank>CAGTTTACATTTCTCGCTGTTTCATTTATCAAGAAACATAGAACTGTGGC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCTACAGTATCCAATGAGAATTTTTGAAAAGTGTAGAGTTTGAAGGGAGCTAAATCAATCTGATGCATTAGTTATGACGCATAACAAGTATCACCTGCTGTTGTTTTTCTAGGTTTTTTTTTGCTTTTCTTTAATTCATCGATCCGTTATTTCATTTTTTTTTCCAAAAAACGCGTTCATGATATGAACTTCATATTAGATTTCACCTATCCCAAACTGCTAATCCTCTACTATCATTTGATAGGAATTTTATCAGTTTTACTAAACACCCTTGGAATTTATCTCCTTCAAACGCAATGCAAAAAACTTGGCACTTCTCGTTATTGGTTATTATCTTATCAGGTCCTGTGTTATATCACTGATATCTTTTTTACCCTTCTAATGCAACCGGTCCCTTTGTACCCGTTGGTGGCAGTGTATACTGTAGGAGTACTGTCAGATTGGTTTGGCATACCACCTGTGGCTTTGAGTTATATCGTTTGTGATTTGATTGCTGTGCAGTTTACATTTCTCGCTGTTTCATTTATCAAGAAACATAGAACTGTGGCATCGTTATCCAACTCGTTGGCTTTTCCAAAACATTCGGATATTGTGATTCTGGTTGCATTGGTTTTGGGGGTTGTACTGGGAGATTCTTATGTGTTATCAATGCGTTTATCCAGAGAGGATCAGTGGAAACTTGTTAATGAGGTTTTTAAGAGAAATATAAGGTCCATAAGGCCTCAAGAGCTACAAGGTGGCTAGAGGCCTCAAAACAGTCAACTTCAAATTATTATATCTCGGTTACTGTAAGAGATATCAAAATCTGTCAACTGACAAAATGTTTATCATAATATCACCTACATTTTATCAATTGACAGATATTTTTTTGTATCTTTGATGGCAATTGAGATAAGTGAGCTCAAAGTGTGAGCTCTTGAATTCTTGGTCGCGTAACTAAATAGAAAAGAGAATCTGAAACTTGAAAAAAACCTACATTGCTCTAAAAAGTCCAGAAA</canonical>
            <polymorphic>GTTCTACAGTATCCAATGAGAATTTTTGAAAAGTGTAGAGTTTGAAGGGAGCTAAATCAATCTGATGCATTAGTTATGACGCATAACAAGTATCACCTGCTGTTGTTTTTCTAGGTTTTTTTTTGCTTTTCTTTAATTCATCGATCCGTTATTTCATTTTTTTTTCCAAAAAACGCGTTCATGATATGAACTTCATATTAGATTTCACCTATCCCAAACTGCTAATCCTCTACTATCATTTGATAGGAATTTTATCAGTTTTACTAAACACCCTTGGAATTTATCTCCTTCAAACGCAATGCAAAAAACTTGGCACTTCTCGTTATTGGTTATTATCTTATCAGGTCCTGTGTTATATCACTGATATCTTTTTTACCCTTCTAATGCAACCGGTCCCTTTGTACCCGTTGGTGGCAGTGTATACTGTAGGAGTACTGTCAGATTGGTTTGGCATACCACCTGTGGCTTTGAGTTATATCGTTTGTGATTTGATTGCTGTRCAGTTTACATTTCTCGCTGTTTCATTTATCAAGAAACATAGAACTGTGGCATCGTTATCCAACTCGTTGGCTTTTCCAAAACATTCGGATATTGTGATTCTGGTTGCATTGGTTTTGGGGGTTGTACTGGGAGATTCTTATGTGTTATCAATGCGTTTATCCAGAGAGGATCAGTGGAAACTTGTTAATGAGGTTTTTAAGAGAAATATAAGGTCCATAAGGCCTCAAGAGCTACAAGGTGGCTAGAGGCCTCAAAACAGTCAACTTCAAATTATTATATCTCGGTTACTGTAAGAGATATCAAAATCTGTCAACTGACAAAATGTTTATCATAATATCACCTACATTTTATCAATTGACAGATATTTTTTTGTATCTTTGATGGCAATTGAGATAAGTGAGCTCAAAGTGTGAGCTCTTGAATTCTTGGTCGCGTAACTAAATAGAAAAGAGAATCTGAAACTTGAAAAAAACCTACATTGCTCTAAAAAGTCCAGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>394 234 114 106 85 67</canonical_bands>
                <polymorphic_bands>394 234 220 85 67</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>112 99 87 65 63 60 60 53 48 48 48 45 39 37 35 32 22 14 11 8 6 6 2</canonical_bands>
                <polymorphic_bands>112 99 87 65 63 62 60 60 53 48 48 45 39 37 35 32 22 11 8 6 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGGCAGTGTATACTGTAGGAGT</pcr_primer_p1>
		<pcr_primer_p2>TAAACGCATTGATAACACATAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTGGCAGTGTATACTGTAGGAGTACTGTCAGATTGGTTTGGCATACCACCTGTGGCTTTGAGTTATATCGTTTGTGATTTGATTGCTGTGCAGTTTACATTTCTCGCTGTTTCATTTATCAAGAAACATAGAACTGTGGCATCGTTATCCAACTCGTTGGCTTTTCCAAAACATTCGGATATTGTGATTCTGGTTGCATTGGTTTTGGGGGTTGTACTGGGAGATTCTTATGTGTTATCAATGCGTTTA</canonical_amplicon>
		<polymorphic_amplicon>GTGGCAGTGTATACTGTAGGAGTACTGTCAGATTGGTTTGGCATACCACCTGTGGCTTTGAGTTATATCGTTTGTGATTTGATTGCTGTRCAGTTTACATTTCTCGCTGTTTCATTTATCAAGAAACATAGAACTGTGGCATCGTTATCCAACTCGTTGGCTTTTCCAAAACATTCGGATATTGTGATTCTGGTTGCATTGGTTTTGGGGGTTGTACTGGGAGATTCTTATGTGTTATCAATGCGTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28676</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>42727</contig_pos>
        <strand>-</strand>
        <context>ACAGTAAAAG[G/T]TTTTTTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTGAAAATCTTCAATCGCCAATATTCAAAGTTTTTGAAACAGTAAAAG</left_flank>
        <right_flank>TTTTTTTTCAGAAATCAGAACAGGGAAAATTTAAGGATTTGGCCATTATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAAAAAAAGTTTCGCGTCCTAGAAAATTCATTTTGAGAAAATTAGGTCACCATATAGTTAGGCCGGTGTCGTGTCGACTCGGCTCGACATTTGTCGACTTTTGTCGACACGATATCGCTCTTGGTGAAGGTCGACACGATTTTTGTCGACTCCTTCAAAACGACATTTTGACTCAAAATCGATCGACAATCGTGTCGACACGTTACTCTAATCTGCACCCTCTACGTTGATTTTTTTGACCTGATTTTGACATATATCTTAAGAACAAGTGATTTTCAGACTATCCTCCCAGAGAGTTTTCTTCTCGACCCAAAATTCTGAATCGATTGATATAAAAATCTCAAAAATTTTGGAATTAGTGGATGCCCCCCTTTAAGAAAAAAAAACTGTAATTTCTGTTGAAAATTAGCTCACGAAATTCAAAATTCAGCGCCGTTTCTACAGATCGTTTTGAAAATCTTCAATCGCCAATATTCAAAGTTTTTGAAACAGTAAAAGTTTTTTTTTCAGAAATCAGAACAGGGAAAATTTAAGGATTTGGCCATTATAAGAATACATAAGAATAATTGGACGCTGGCAGAAAATATTCCTAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGAGAATCATCATAATGTCGCGATTGATCATTTTTCCAATTAAAGCAAAAAAAAACCGATTGAACCCTTTCATTGAAACTTTTTTTTTCAGAATTTGCAGGTTTTTGGTTTTTGCCGGTGGCCATATGTTTTCAGAAACAGAAAAGGAATTTTCAGCATTTTGAGATCCTGAAAATTTTTACTGTTTCAAAAAAGAGTAATATTGGAAACCAAGATTTCCAAATTAATAATATTTTTCCACAAAACAACATTTTTGAAAAATATGGTTTTTGGTGGATTTTCAGAATCATATATTTTGAAATCTTGAAATTGTAAAGTCAGACTTCGAACACAGTAATTTCTGTTGAAAACTGGCTCAATTAGGTTTT</canonical>
            <polymorphic>GCAAAAAAAGTTTCGCGTCCTAGAAAATTCATTTTGAGAAAATTAGGTCACCATATAGTTAGGCCGGTGTCGTGTCGACTCGGCTCGACATTTGTCGACTTTTGTCGACACGATATCGCTCTTGGTGAAGGTCGACACGATTTTTGTCGACTCCTTCAAAACGACATTTTGACTCAAAATCGATCGACAATCGTGTCGACACGTTACTCTAATCTGCACCCTCTACGTTGATTTTTTTGACCTGATTTTGACATATATCTTAAGAACAAGTGATTTTCAGACTATCCTCCCAGAGAGTTTTCTTCTCGACCCAAAATTCTGAATCGATTGATATAAAAATCTCAAAAATTTTGGAATTAGTGGATGCCCCCCTTTAAGAAAAAAAAACTGTAATTTCTGTTGAAAATTAGCTCACGAAATTCAAAATTCAGCGCCGTTTCTACAGATCGTTTTGAAAATCTTCAATCGCCAATATTCAAAGTTTTTGAAACAGTAAAAGKTTTTTTTTCAGAAATCAGAACAGGGAAAATTTAAGGATTTGGCCATTATAAGAATACATAAGAATAATTGGACGCTGGCAGAAAATATTCCTAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGAGAATCATCATAATGTCGCGATTGATCATTTTTCCAATTAAAGCAAAAAAAAACCGATTGAACCCTTTCATTGAAACTTTTTTTTTCAGAATTTGCAGGTTTTTGGTTTTTGCCGGTGGCCATATGTTTTCAGAAACAGAAAAGGAATTTTCAGCATTTTGAGATCCTGAAAATTTTTACTGTTTCAAAAAAGAGTAATATTGGAAACCAAGATTTCCAAATTAATAATATTTTTCCACAAAACAACATTTTTGAAAAATATGGTTTTTGGTGGATTTTCAGAATCATATATTTTGAAATCTTGAAATTGTAAAGTCAGACTTCGAACACAGTAATTTCTGTTGAAAACTGGCTCAATTAGGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCTGTTGAAAATTAGCTCAC</pcr_primer_p1>
		<pcr_primer_p2>ATTCTCTCCAGATTTCTGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTTCTGTTGAAAATTAGCTCACGAAATTCAAAATTCAGCGCCGTTTCTACAGATCGTTTTGAAAATCTTCAATCGCCAATATTCAAAGTTTTTGAAACAGTAAAAGTTTTTTTTTCAGAAATCAGAACAGGGAAAATTTAAGGATTTGGCCATTATAAGAATACATAAGAATAATTGGACGCTGGCAGAAAATATTCCTAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGAGAAT</canonical_amplicon>
		<polymorphic_amplicon>ATTTCTGTTGAAAATTAGCTCACGAAATTCAAAATTCAGCGCCGTTTCTACAGATCGTTTTGAAAATCTTCAATCGCCAATATTCAAAGTTTTTGAAACAGTAAAAGKTTTTTTTTCAGAAATCAGAACAGGGAAAATTTAAGGATTTGGCCATTATAAGAATACATAAGAATAATTGGACGCTGGCAGAAAATATTCCTAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28677</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>42784</contig_pos>
        <strand>-</strand>
        <context>TATAAGAATA[A/G/C/T]ATAAGAATAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G/C/T</alleles>
        <left_flank>TTCAGAAATCAGAACAGGGAAAATTTAAGGATTTGGCCATTATAAGAATA</left_flank>
        <right_flank>ATAAGAATAATTGGACGCTGGCAGAAAATATTCCTAAACTTTCACTGTCC</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTAGGCCGGTGTCGTGTCGACTCGGCTCGACATTTGTCGACTTTTGTCGACACGATATCGCTCTTGGTGAAGGTCGACACGATTTTTGTCGACTCCTTCAAAACGACATTTTGACTCAAAATCGATCGACAATCGTGTCGACACGTTACTCTAATCTGCACCCTCTACGTTGATTTTTTTGACCTGATTTTGACATATATCTTAAGAACAAGTGATTTTCAGACTATCCTCCCAGAGAGTTTTCTTCTCGACCCAAAATTCTGAATCGATTGATATAAAAATCTCAAAAATTTTGGAATTAGTGGATGCCCCCCTTTAAGAAAAAAAAACTGTAATTTCTGTTGAAAATTAGCTCACGAAATTCAAAATTCAGCGCCGTTTCTACAGATCGTTTTGAAAATCTTCAATCGCCAATATTCAAAGTTTTTGAAACAGTAAAAGTTTTTTTTTCAGAAATCAGAACAGGGAAAATTTAAGGATTTGGCCATTATAAGAATACATAAGAATAATTGGACGCTGGCAGAAAATATTCCTAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGAGAATCATCATAATGTCGCGATTGATCATTTTTCCAATTAAAGCAAAAAAAAACCGATTGAACCCTTTCATTGAAACTTTTTTTTTCAGAATTTGCAGGTTTTTGGTTTTTGCCGGTGGCCATATGTTTTCAGAAACAGAAAAGGAATTTTCAGCATTTTGAGATCCTGAAAATTTTTACTGTTTCAAAAAAGAGTAATATTGGAAACCAAGATTTCCAAATTAATAATATTTTTCCACAAAACAACATTTTTGAAAAATATGGTTTTTGGTGGATTTTCAGAATCATATATTTTGAAATCTTGAAATTGTAAAGTCAGACTTCGAACACAGTAATTTCTGTTGAAAACTGGCTCAATTAGGTTTTCAGTCGGTGACTTTAGAATTTGAAAATCGCAGTGTCCCTTGTGCGGATCATTCCGTG</canonical>
            <polymorphic>GTTAGGCCGGTGTCGTGTCGACTCGGCTCGACATTTGTCGACTTTTGTCGACACGATATCGCTCTTGGTGAAGGTCGACACGATTTTTGTCGACTCCTTCAAAACGACATTTTGACTCAAAATCGATCGACAATCGTGTCGACACGTTACTCTAATCTGCACCCTCTACGTTGATTTTTTTGACCTGATTTTGACATATATCTTAAGAACAAGTGATTTTCAGACTATCCTCCCAGAGAGTTTTCTTCTCGACCCAAAATTCTGAATCGATTGATATAAAAATCTCAAAAATTTTGGAATTAGTGGATGCCCCCCTTTAAGAAAAAAAAACTGTAATTTCTGTTGAAAATTAGCTCACGAAATTCAAAATTCAGCGCCGTTTCTACAGATCGTTTTGAAAATCTTCAATCGCCAATATTCAAAGTTTTTGAAACAGTAAAAGTTTTTTTTTCAGAAATCAGAACAGGGAAAATTTAAGGATTTGGCCATTATAAGAATARATAAGAATAATTGGACGCTGGCAGAAAATATTCCTAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGAGAATCATCATAATGTCGCGATTGATCATTTTTCCAATTAAAGCAAAAAAAAACCGATTGAACCCTTTCATTGAAACTTTTTTTTTCAGAATTTGCAGGTTTTTGGTTTTTGCCGGTGGCCATATGTTTTCAGAAACAGAAAAGGAATTTTCAGCATTTTGAGATCCTGAAAATTTTTACTGTTTCAAAAAAGAGTAATATTGGAAACCAAGATTTCCAAATTAATAATATTTTTCCACAAAACAACATTTTTGAAAAATATGGTTTTTGGTGGATTTTCAGAATCATATATTTTGAAATCTTGAAATTGTAAAGTCAGACTTCGAACACAGTAATTTCTGTTGAAAACTGGCTCAATTAGGTTTTCAGTCGGTGACTTTAGAATTTGAAAATCGCAGTGTCCCTTGTGCGGATCATTCCGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCTGTTGAAAATTAGCTCAC</pcr_primer_p1>
		<pcr_primer_p2>ATTCTCTCCAGATTTCTGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTTCTGTTGAAAATTAGCTCACGAAATTCAAAATTCAGCGCCGTTTCTACAGATCGTTTTGAAAATCTTCAATCGCCAATATTCAAAGTTTTTGAAACAGTAAAAGTTTTTTTTTCAGAAATCAGAACAGGGAAAATTTAAGGATTTGGCCATTATAAGAATACATAAGAATAATTGGACGCTGGCAGAAAATATTCCTAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGAGAAT</canonical_amplicon>
		<polymorphic_amplicon>ATTTCTGTTGAAAATTAGCTCACGAAATTCAAAATTCAGCGCCGTTTCTACAGATCGTTTTGAAAATCTTCAATCGCCAATATTCAAAGTTTTTGAAACAGTAAAAGTTTTTTTTTCAGAAATCAGAACAGGGAAAATTTAAGGATTTGGCCATTATAAGAATARATAAGAATAATTGGACGCTGGCAGAAAATATTCCTAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28678</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>42812</contig_pos>
        <strand>-</strand>
        <context>CTGGCAGAAA[C/T/A/G]TATTCCTAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T/A/G</alleles>
        <left_flank>GGATTTGGCCATTATAAGAATACATAAGAATAATTGGACGCTGGCAGAAA</left_flank>
        <right_flank>TATTCCTAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGA</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGACATTTGTCGACTTTTGTCGACACGATATCGCTCTTGGTGAAGGTCGACACGATTTTTGTCGACTCCTTCAAAACGACATTTTGACTCAAAATCGATCGACAATCGTGTCGACACGTTACTCTAATCTGCACCCTCTACGTTGATTTTTTTGACCTGATTTTGACATATATCTTAAGAACAAGTGATTTTCAGACTATCCTCCCAGAGAGTTTTCTTCTCGACCCAAAATTCTGAATCGATTGATATAAAAATCTCAAAAATTTTGGAATTAGTGGATGCCCCCCTTTAAGAAAAAAAAACTGTAATTTCTGTTGAAAATTAGCTCACGAAATTCAAAATTCAGCGCCGTTTCTACAGATCGTTTTGAAAATCTTCAATCGCCAATATTCAAAGTTTTTGAAACAGTAAAAGTTTTTTTTTCAGAAATCAGAACAGGGAAAATTTAAGGATTTGGCCATTATAAGAATACATAAGAATAATTGGACGCTGGCAGAAAATATTCCTAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGAGAATCATCATAATGTCGCGATTGATCATTTTTCCAATTAAAGCAAAAAAAAACCGATTGAACCCTTTCATTGAAACTTTTTTTTTCAGAATTTGCAGGTTTTTGGTTTTTGCCGGTGGCCATATGTTTTCAGAAACAGAAAAGGAATTTTCAGCATTTTGAGATCCTGAAAATTTTTACTGTTTCAAAAAAGAGTAATATTGGAAACCAAGATTTCCAAATTAATAATATTTTTCCACAAAACAACATTTTTGAAAAATATGGTTTTTGGTGGATTTTCAGAATCATATATTTTGAAATCTTGAAATTGTAAAGTCAGACTTCGAACACAGTAATTTCTGTTGAAAACTGGCTCAATTAGGTTTTCAGTCGGTGACTTTAGAATTTGAAAATCGCAGTGTCCCTTGTGCGGATCATTCCGTGAATCTAGGTTTCTAATGTTGAGATTTTC</canonical>
            <polymorphic>CGACATTTGTCGACTTTTGTCGACACGATATCGCTCTTGGTGAAGGTCGACACGATTTTTGTCGACTCCTTCAAAACGACATTTTGACTCAAAATCGATCGACAATCGTGTCGACACGTTACTCTAATCTGCACCCTCTACGTTGATTTTTTTGACCTGATTTTGACATATATCTTAAGAACAAGTGATTTTCAGACTATCCTCCCAGAGAGTTTTCTTCTCGACCCAAAATTCTGAATCGATTGATATAAAAATCTCAAAAATTTTGGAATTAGTGGATGCCCCCCTTTAAGAAAAAAAAACTGTAATTTCTGTTGAAAATTAGCTCACGAAATTCAAAATTCAGCGCCGTTTCTACAGATCGTTTTGAAAATCTTCAATCGCCAATATTCAAAGTTTTTGAAACAGTAAAAGTTTTTTTTTCAGAAATCAGAACAGGGAAAATTTAAGGATTTGGCCATTATAAGAATACATAAGAATAATTGGACGCTGGCAGAAAYTATTCCTAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGAGAATCATCATAATGTCGCGATTGATCATTTTTCCAATTAAAGCAAAAAAAAACCGATTGAACCCTTTCATTGAAACTTTTTTTTTCAGAATTTGCAGGTTTTTGGTTTTTGCCGGTGGCCATATGTTTTCAGAAACAGAAAAGGAATTTTCAGCATTTTGAGATCCTGAAAATTTTTACTGTTTCAAAAAAGAGTAATATTGGAAACCAAGATTTCCAAATTAATAATATTTTTCCACAAAACAACATTTTTGAAAAATATGGTTTTTGGTGGATTTTCAGAATCATATATTTTGAAATCTTGAAATTGTAAAGTCAGACTTCGAACACAGTAATTTCTGTTGAAAACTGGCTCAATTAGGTTTTCAGTCGGTGACTTTAGAATTTGAAAATCGCAGTGTCCCTTGTGCGGATCATTCCGTGAATCTAGGTTTCTAATGTTGAGATTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>388 247 222 113 30</canonical_bands>
                <polymorphic_bands>388 360 222 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCTGTTGAAAATTAGCTCAC</pcr_primer_p1>
		<pcr_primer_p2>ATTCTCTCCAGATTTCTGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTTCTGTTGAAAATTAGCTCACGAAATTCAAAATTCAGCGCCGTTTCTACAGATCGTTTTGAAAATCTTCAATCGCCAATATTCAAAGTTTTTGAAACAGTAAAAGTTTTTTTTTCAGAAATCAGAACAGGGAAAATTTAAGGATTTGGCCATTATAAGAATACATAAGAATAATTGGACGCTGGCAGAAAATATTCCTAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGAGAAT</canonical_amplicon>
		<polymorphic_amplicon>ATTTCTGTTGAAAATTAGCTCACGAAATTCAAAATTCAGCGCCGTTTCTACAGATCGTTTTGAAAATCTTCAATCGCCAATATTCAAAGTTTTTGAAACAGTAAAAGTTTTTTTTTCAGAAATCAGAACAGGGAAAATTTAAGGATTTGGCCATTATAAGAATACATAAGAATAATTGGACGCTGGCAGAAAYTATTCCTAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28679</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>42906</contig_pos>
        <strand>-</strand>
        <context>CAATTAAAGC[A/T]AAAAAAAACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGGAGAGAATCATCATAATGTCGCGATTGATCATTTTTCCAATTAAAGC</left_flank>
        <right_flank>AAAAAAAACCGATTGAACCCTTTCATTGAAACTTTTTTTTTCAGAATTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGATCGACAATCGTGTCGACACGTTACTCTAATCTGCACCCTCTACGTTGATTTTTTTGACCTGATTTTGACATATATCTTAAGAACAAGTGATTTTCAGACTATCCTCCCAGAGAGTTTTCTTCTCGACCCAAAATTCTGAATCGATTGATATAAAAATCTCAAAAATTTTGGAATTAGTGGATGCCCCCCTTTAAGAAAAAAAAACTGTAATTTCTGTTGAAAATTAGCTCACGAAATTCAAAATTCAGCGCCGTTTCTACAGATCGTTTTGAAAATCTTCAATCGCCAATATTCAAAGTTTTTGAAACAGTAAAAGTTTTTTTTTCAGAAATCAGAACAGGGAAAATTTAAGGATTTGGCCATTATAAGAATACATAAGAATAATTGGACGCTGGCAGAAAATATTCCTAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGAGAATCATCATAATGTCGCGATTGATCATTTTTCCAATTAAAGCAAAAAAAAACCGATTGAACCCTTTCATTGAAACTTTTTTTTTCAGAATTTGCAGGTTTTTGGTTTTTGCCGGTGGCCATATGTTTTCAGAAACAGAAAAGGAATTTTCAGCATTTTGAGATCCTGAAAATTTTTACTGTTTCAAAAAAGAGTAATATTGGAAACCAAGATTTCCAAATTAATAATATTTTTCCACAAAACAACATTTTTGAAAAATATGGTTTTTGGTGGATTTTCAGAATCATATATTTTGAAATCTTGAAATTGTAAAGTCAGACTTCGAACACAGTAATTTCTGTTGAAAACTGGCTCAATTAGGTTTTCAGTCGGTGACTTTAGAATTTGAAAATCGCAGTGTCCCTTGTGCGGATCATTCCGTGAATCTAGGTTTCTAATGTTGAGATTTTCTGAAAAAGTAAAAATTATCGAATGTTTTTCTAACAAAATACAGTTTGATATTTTTCGTGTATTCTTTTTCTGTAATTTAGATTTGGAAAGTGGA</canonical>
            <polymorphic>TCGATCGACAATCGTGTCGACACGTTACTCTAATCTGCACCCTCTACGTTGATTTTTTTGACCTGATTTTGACATATATCTTAAGAACAAGTGATTTTCAGACTATCCTCCCAGAGAGTTTTCTTCTCGACCCAAAATTCTGAATCGATTGATATAAAAATCTCAAAAATTTTGGAATTAGTGGATGCCCCCCTTTAAGAAAAAAAAACTGTAATTTCTGTTGAAAATTAGCTCACGAAATTCAAAATTCAGCGCCGTTTCTACAGATCGTTTTGAAAATCTTCAATCGCCAATATTCAAAGTTTTTGAAACAGTAAAAGTTTTTTTTTCAGAAATCAGAACAGGGAAAATTTAAGGATTTGGCCATTATAAGAATACATAAGAATAATTGGACGCTGGCAGAAAATATTCCTAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGAGAATCATCATAATGTCGCGATTGATCATTTTTCCAATTAAAGCWAAAAAAAACCGATTGAACCCTTTCATTGAAACTTTTTTTTTCAGAATTTGCAGGTTTTTGGTTTTTGCCGGTGGCCATATGTTTTCAGAAACAGAAAAGGAATTTTCAGCATTTTGAGATCCTGAAAATTTTTACTGTTTCAAAAAAGAGTAATATTGGAAACCAAGATTTCCAAATTAATAATATTTTTCCACAAAACAACATTTTTGAAAAATATGGTTTTTGGTGGATTTTCAGAATCATATATTTTGAAATCTTGAAATTGTAAAGTCAGACTTCGAACACAGTAATTTCTGTTGAAAACTGGCTCAATTAGGTTTTCAGTCGGTGACTTTAGAATTTGAAAATCGCAGTGTCCCTTGTGCGGATCATTCCGTGAATCTAGGTTTCTAATGTTGAGATTTTCTGAAAAAGTAAAAATTATCGAATGTTTTTCTAACAAAATACAGTTTGATATTTTTCGTGTATTCTTTTTCTGTAATTTAGATTTGGAAAGTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTTGGCCATTATAAGAATA</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCCTTTTCTGTTTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGATTTGGCCATTATAAGAATACATAAGAATAATTGGACGCTGGCAGAAAATATTCCTAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGAGAATCATCATAATGTCGCGATTGATCATTTTTCCAATTAAAGCAAAAAAAAACCGATTGAACCCTTTCATTGAAACTTTTTTTTTCAGAATTTGCAGGTTTTTGGTTTTTGCCGGTGGCCATATGTTTTCAGAAACAGAAAAGGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>GGATTTGGCCATTATAAGAATACATAAGAATAATTGGACGCTGGCAGAAAATATTCCTAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGAGAATCATCATAATGTCGCGATTGATCATTTTTCCAATTAAAGCWAAAAAAAACCGATTGAACCCTTTCATTGAAACTTTTTTTTTCAGAATTTGCAGGTTTTTGGTTTTTGCCGGTGGCCATATGTTTTCAGAAACAGAAAAGGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28680</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>42935</contig_pos>
        <strand></strand>
        <context>CCTTTCATTG[A/T]AACMTTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATCATTTTTCCAATTAAAGCAAAAAAAAACCGATTGAACCCTTTCATTG</left_flank>
        <right_flank>AACTTTTTTTTTCAGAATTTGCAGGTTTTTGGTTTTTGCCGGTGGCCATA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAATCTGCACCCTCTACGTTGATTTTTTTGACCTGATTTTGACATATATCTTAAGAACAAGTGATTTTCAGACTATCCTCCCAGAGAGTTTTCTTCTCGACCCAAAATTCTGAATCGATTGATATAAAAATCTCAAAAATTTTGGAATTAGTGGATGCCCCCCTTTAAGAAAAAAAAACTGTAATTTCTGTTGAAAATTAGCTCACGAAATTCAAAATTCAGCGCCGTTTCTACAGATCGTTTTGAAAATCTTCAATCGCCAATATTCAAAGTTTTTGAAACAGTAAAAGTTTTTTTTTCAGAAATCAGAACAGGGAAAATTTAAGGATTTGGCCATTATAAGAATACATAAGAATAATTGGACGCTGGCAGAAAATATTCCTAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGAGAATCATCATAATGTCGCGATTGATCATTTTTCCAATTAAAGCAAAAAAAAACCGATTGAACCCTTTCATTGAAACTTTTTTTTTCAGAATTTGCAGGTTTTTGGTTTTTGCCGGTGGCCATATGTTTTCAGAAACAGAAAAGGAATTTTCAGCATTTTGAGATCCTGAAAATTTTTACTGTTTCAAAAAAGAGTAATATTGGAAACCAAGATTTCCAAATTAATAATATTTTTCCACAAAACAACATTTTTGAAAAATATGGTTTTTGGTGGATTTTCAGAATCATATATTTTGAAATCTTGAAATTGTAAAGTCAGACTTCGAACACAGTAATTTCTGTTGAAAACTGGCTCAATTAGGTTTTCAGTCGGTGACTTTAGAATTTGAAAATCGCAGTGTCCCTTGTGCGGATCATTCCGTGAATCTAGGTTTCTAATGTTGAGATTTTCTGAAAAAGTAAAAATTATCGAATGTTTTTCTAACAAAATACAGTTTGATATTTTTCGTGTATTCTTTTTCTGTAATTTAGATTTGGAAAGTGGAAAATAAAGATTTAGAATTAAAAAAAATTT</canonical>
            <polymorphic>CTAATCTGCACCCTCTACGTTGATTTTTTTGACCTGATTTTGACATATATCTTAAGAACAAGTGATTTTCAGACTATCCTCCCAGAGAGTTTTCTTCTCGACCCAAAATTCTGAATCGATTGATATAAAAATCTCAAAAATTTTGGAATTAGTGGATGCCCCCCTTTAAGAAAAAAAAACTGTAATTTCTGTTGAAAATTAGCTCACGAAATTCAAAATTCAGCGCCGTTTCTACAGATCGTTTTGAAAATCTTCAATCGCCAATATTCAAAGTTTTTGAAACAGTAAAAGTTTTTTTTTCAGAAATCAGAACAGGGAAAATTTAAGGATTTGGCCATTATAAGAATACATAAGAATAATTGGACGCTGGCAGAAAATATTCCTAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGAGAATCATCATAATGTCGCGATTGATCATTTTTCCAATTAAAGCAAAAAAAAACCGATTGAACCCTTTCATTGWAACTTTTTTTTTCAGAATTTGCAGGTTTTTGGTTTTTGCCGGTGGCCATATGTTTTCAGAAACAGAAAAGGAATTTTCAGCATTTTGAGATCCTGAAAATTTTTACTGTTTCAAAAAAGAGTAATATTGGAAACCAAGATTTCCAAATTAATAATATTTTTCCACAAAACAACATTTTTGAAAAATATGGTTTTTGGTGGATTTTCAGAATCATATATTTTGAAATCTTGAAATTGTAAAGTCAGACTTCGAACACAGTAATTTCTGTTGAAAACTGGCTCAATTAGGTTTTCAGTCGGTGACTTTAGAATTTGAAAATCGCAGTGTCCCTTGTGCGGATCATTCCGTGAATCTAGGTTTCTAATGTTGAGATTTTCTGAAAAAGTAAAAATTATCGAATGTTTTTCTAACAAAATACAGTTTGATATTTTTCGTGTATTCTTTTTCTGTAATTTAGATTTGGAAAGTGGAAAATAAAGATTTAGAATTAAAAAAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTTGGCCATTATAAGAATA</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCCTTTTCTGTTTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGATTTGGCCATTATAAGAATACATAAGAATAATTGGACGCTGGCAGAAAATATTCCTAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGAGAATCATCATAATGTCGCGATTGATCATTTTTCCAATTAAAGCAAAAAAAAACCGATTGAACCCTTTCATTGAAACTTTTTTTTTCAGAATTTGCAGGTTTTTGGTTTTTGCCGGTGGCCATATGTTTTCAGAAACAGAAAAGGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>GGATTTGGCCATTATAAGAATACATAAGAATAATTGGACGCTGGCAGAAAATATTCCTAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGAGAATCATCATAATGTCGCGATTGATCATTTTTCCAATTAAAGCAAAAAAAAACCGATTGAACCCTTTCATTGWAACTTTTTTTTTCAGAATTTGCAGGTTTTTGGTTTTTGCCGGTGGCCATATGTTTTCAGAAACAGAAAAGGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28681</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>42939</contig_pos>
        <strand>-</strand>
        <context>TCATTGWAAC[A/C]TTTTTTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTTTCCAATTAAAGCAAAAAAAAACCGATTGAACCCTTTCATTGAAAC</left_flank>
        <right_flank>TTTTTTTTCAGAATTTGCAGGTTTTTGGTTTTTGCCGGTGGCCATATGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGCACCCTCTACGTTGATTTTTTTGACCTGATTTTGACATATATCTTAAGAACAAGTGATTTTCAGACTATCCTCCCAGAGAGTTTTCTTCTCGACCCAAAATTCTGAATCGATTGATATAAAAATCTCAAAAATTTTGGAATTAGTGGATGCCCCCCTTTAAGAAAAAAAAACTGTAATTTCTGTTGAAAATTAGCTCACGAAATTCAAAATTCAGCGCCGTTTCTACAGATCGTTTTGAAAATCTTCAATCGCCAATATTCAAAGTTTTTGAAACAGTAAAAGTTTTTTTTTCAGAAATCAGAACAGGGAAAATTTAAGGATTTGGCCATTATAAGAATACATAAGAATAATTGGACGCTGGCAGAAAATATTCCTAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGAGAATCATCATAATGTCGCGATTGATCATTTTTCCAATTAAAGCAAAAAAAAACCGATTGAACCCTTTCATTGAAACTTTTTTTTTCAGAATTTGCAGGTTTTTGGTTTTTGCCGGTGGCCATATGTTTTCAGAAACAGAAAAGGAATTTTCAGCATTTTGAGATCCTGAAAATTTTTACTGTTTCAAAAAAGAGTAATATTGGAAACCAAGATTTCCAAATTAATAATATTTTTCCACAAAACAACATTTTTGAAAAATATGGTTTTTGGTGGATTTTCAGAATCATATATTTTGAAATCTTGAAATTGTAAAGTCAGACTTCGAACACAGTAATTTCTGTTGAAAACTGGCTCAATTAGGTTTTCAGTCGGTGACTTTAGAATTTGAAAATCGCAGTGTCCCTTGTGCGGATCATTCCGTGAATCTAGGTTTCTAATGTTGAGATTTTCTGAAAAAGTAAAAATTATCGAATGTTTTTCTAACAAAATACAGTTTGATATTTTTCGTGTATTCTTTTTCTGTAATTTAGATTTGGAAAGTGGAAAATAAAGATTTAGAATTAAAAAAAATTTTAAA</canonical>
            <polymorphic>TCTGCACCCTCTACGTTGATTTTTTTGACCTGATTTTGACATATATCTTAAGAACAAGTGATTTTCAGACTATCCTCCCAGAGAGTTTTCTTCTCGACCCAAAATTCTGAATCGATTGATATAAAAATCTCAAAAATTTTGGAATTAGTGGATGCCCCCCTTTAAGAAAAAAAAACTGTAATTTCTGTTGAAAATTAGCTCACGAAATTCAAAATTCAGCGCCGTTTCTACAGATCGTTTTGAAAATCTTCAATCGCCAATATTCAAAGTTTTTGAAACAGTAAAAGTTTTTTTTTCAGAAATCAGAACAGGGAAAATTTAAGGATTTGGCCATTATAAGAATACATAAGAATAATTGGACGCTGGCAGAAAATATTCCTAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGAGAATCATCATAATGTCGCGATTGATCATTTTTCCAATTAAAGCAAAAAAAAACCGATTGAACCCTTTCATTGAAACMTTTTTTTTCAGAATTTGCAGGTTTTTGGTTTTTGCCGGTGGCCATATGTTTTCAGAAACAGAAAAGGAATTTTCAGCATTTTGAGATCCTGAAAATTTTTACTGTTTCAAAAAAGAGTAATATTGGAAACCAAGATTTCCAAATTAATAATATTTTTCCACAAAACAACATTTTTGAAAAATATGGTTTTTGGTGGATTTTCAGAATCATATATTTTGAAATCTTGAAATTGTAAAGTCAGACTTCGAACACAGTAATTTCTGTTGAAAACTGGCTCAATTAGGTTTTCAGTCGGTGACTTTAGAATTTGAAAATCGCAGTGTCCCTTGTGCGGATCATTCCGTGAATCTAGGTTTCTAATGTTGAGATTTTCTGAAAAAGTAAAAATTATCGAATGTTTTTCTAACAAAATACAGTTTGATATTTTTCGTGTATTCTTTTTCTGTAATTTAGATTTGGAAAGTGGAAAATAAAGATTTAGAATTAAAAAAAATTTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTTGGCCATTATAAGAATA</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCCTTTTCTGTTTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGATTTGGCCATTATAAGAATACATAAGAATAATTGGACGCTGGCAGAAAATATTCCTAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGAGAATCATCATAATGTCGCGATTGATCATTTTTCCAATTAAAGCAAAAAAAAACCGATTGAACCCTTTCATTGAAACTTTTTTTTTCAGAATTTGCAGGTTTTTGGTTTTTGCCGGTGGCCATATGTTTTCAGAAACAGAAAAGGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>GGATTTGGCCATTATAAGAATACATAAGAATAATTGGACGCTGGCAGAAAATATTCCTAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGAGAATCATCATAATGTCGCGATTGATCATTTTTCCAATTAAAGCAAAAAAAAACCGATTGAACCCTTTCATTGAAACMTTTTTTTTCAGAATTTGCAGGTTTTTGGTTTTTGCCGGTGGCCATATGTTTTCAGAAACAGAAAAGGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28682</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>42962</contig_pos>
        <strand></strand>
        <context>ATTTGCAGGT[T/G]TTTGGTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AAACCGATTGAACCCTTTCATTGAAACTTTTTTTTTCAGAATTTGCAGGT</left_flank>
        <right_flank>TTTGGTTTTTGCCGGTGGCCATATGTTTTCAGAAACAGAAAAGGAATTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGACCTGATTTTGACATATATCTTAAGAACAAGTGATTTTCAGACTATCCTCCCAGAGAGTTTTCTTCTCGACCCAAAATTCTGAATCGATTGATATAAAAATCTCAAAAATTTTGGAATTAGTGGATGCCCCCCTTTAAGAAAAAAAAACTGTAATTTCTGTTGAAAATTAGCTCACGAAATTCAAAATTCAGCGCCGTTTCTACAGATCGTTTTGAAAATCTTCAATCGCCAATATTCAAAGTTTTTGAAACAGTAAAAGTTTTTTTTTCAGAAATCAGAACAGGGAAAATTTAAGGATTTGGCCATTATAAGAATACATAAGAATAATTGGACGCTGGCAGAAAATATTCCTAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGAGAATCATCATAATGTCGCGATTGATCATTTTTCCAATTAAAGCAAAAAAAAACCGATTGAACCCTTTCATTGAAACTTTTTTTTTCAGAATTTGCAGGTTTTTGGTTTTTGCCGGTGGCCATATGTTTTCAGAAACAGAAAAGGAATTTTCAGCATTTTGAGATCCTGAAAATTTTTACTGTTTCAAAAAAGAGTAATATTGGAAACCAAGATTTCCAAATTAATAATATTTTTCCACAAAACAACATTTTTGAAAAATATGGTTTTTGGTGGATTTTCAGAATCATATATTTTGAAATCTTGAAATTGTAAAGTCAGACTTCGAACACAGTAATTTCTGTTGAAAACTGGCTCAATTAGGTTTTCAGTCGGTGACTTTAGAATTTGAAAATCGCAGTGTCCCTTGTGCGGATCATTCCGTGAATCTAGGTTTCTAATGTTGAGATTTTCTGAAAAAGTAAAAATTATCGAATGTTTTTCTAACAAAATACAGTTTGATATTTTTCGTGTATTCTTTTTCTGTAATTTAGATTTGGAAAGTGGAAAATAAAGATTTAGAATTAAAAAAAATTTTAAATGTTCAGTGATGAAATCTGAAAA</canonical>
            <polymorphic>TTTGACCTGATTTTGACATATATCTTAAGAACAAGTGATTTTCAGACTATCCTCCCAGAGAGTTTTCTTCTCGACCCAAAATTCTGAATCGATTGATATAAAAATCTCAAAAATTTTGGAATTAGTGGATGCCCCCCTTTAAGAAAAAAAAACTGTAATTTCTGTTGAAAATTAGCTCACGAAATTCAAAATTCAGCGCCGTTTCTACAGATCGTTTTGAAAATCTTCAATCGCCAATATTCAAAGTTTTTGAAACAGTAAAAGTTTTTTTTTCAGAAATCAGAACAGGGAAAATTTAAGGATTTGGCCATTATAAGAATACATAAGAATAATTGGACGCTGGCAGAAAATATTCCTAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGAGAATCATCATAATGTCGCGATTGATCATTTTTCCAATTAAAGCAAAAAAAAACCGATTGAACCCTTTCATTGAAACTTTTTTTTTCAGAATTTGCAGGTKTTTGGTTTTTGCCGGTGGCCATATGTTTTCAGAAACAGAAAAGGAATTTTCAGCATTTTGAGATCCTGAAAATTTTTACTGTTTCAAAAAAGAGTAATATTGGAAACCAAGATTTCCAAATTAATAATATTTTTCCACAAAACAACATTTTTGAAAAATATGGTTTTTGGTGGATTTTCAGAATCATATATTTTGAAATCTTGAAATTGTAAAGTCAGACTTCGAACACAGTAATTTCTGTTGAAAACTGGCTCAATTAGGTTTTCAGTCGGTGACTTTAGAATTTGAAAATCGCAGTGTCCCTTGTGCGGATCATTCCGTGAATCTAGGTTTCTAATGTTGAGATTTTCTGAAAAAGTAAAAATTATCGAATGTTTTTCTAACAAAATACAGTTTGATATTTTTCGTGTATTCTTTTTCTGTAATTTAGATTTGGAAAGTGGAAAATAAAGATTTAGAATTAAAAAAAATTTTAAATGTTCAGTGATGAAATCTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAACTTTCACTGTCCCAATTT</pcr_primer_p1>
		<pcr_primer_p2>TTGGTTTCCAATATTACTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGAGAATCATCATAATGTCGCGATTGATCATTTTTCCAATTAAAGCAAAAAAAAACCGATTGAACCCTTTCATTGAAACTTTTTTTTTCAGAATTTGCAGGTTTTTGGTTTTTGCCGGTGGCCATATGTTTTCAGAAACAGAAAAGGAATTTTCAGCATTTTGAGATCCTGAAAATTTTTACTGTTTCAAAAAAGAGTAATATTGGAAACCAA</canonical_amplicon>
		<polymorphic_amplicon>TAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGAGAATCATCATAATGTCGCGATTGATCATTTTTCCAATTAAAGCAAAAAAAAACCGATTGAACCCTTTCATTGAAACTTTTTTTTTCAGAATTTGCAGGTKTTTGGTTTTTGCCGGTGGCCATATGTTTTCAGAAACAGAAAAGGAATTTTCAGCATTTTGAGATCCTGAAAATTTTTACTGTTTCAAAAAAGAGTAATATTGGAAACCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28683</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>43115</contig_pos>
        <strand>-</strand>
        <context>CAACATTTTT[A/C/G/T]AAAAATWTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C/G/T</alleles>
        <left_flank>GAAACCAAGATTTCCAAATTAATAATATTTTTCCACAAAACAACATTTTT</left_flank>
        <right_flank>AAAAATATGGTTTTTGGTGGATTTTCAGAATCATATATTTTGAAATCTTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTAATTTCTGTTGAAAATTAGCTCACGAAATTCAAAATTCAGCGCCGTTTCTACAGATCGTTTTGAAAATCTTCAATCGCCAATATTCAAAGTTTTTGAAACAGTAAAAGTTTTTTTTTCAGAAATCAGAACAGGGAAAATTTAAGGATTTGGCCATTATAAGAATACATAAGAATAATTGGACGCTGGCAGAAAATATTCCTAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGAGAATCATCATAATGTCGCGATTGATCATTTTTCCAATTAAAGCAAAAAAAAACCGATTGAACCCTTTCATTGAAACTTTTTTTTTCAGAATTTGCAGGTTTTTGGTTTTTGCCGGTGGCCATATGTTTTCAGAAACAGAAAAGGAATTTTCAGCATTTTGAGATCCTGAAAATTTTTACTGTTTCAAAAAAGAGTAATATTGGAAACCAAGATTTCCAAATTAATAATATTTTTCCACAAAACAACATTTTTGAAAAATATGGTTTTTGGTGGATTTTCAGAATCATATATTTTGAAATCTTGAAATTGTAAAGTCAGACTTCGAACACAGTAATTTCTGTTGAAAACTGGCTCAATTAGGTTTTCAGTCGGTGACTTTAGAATTTGAAAATCGCAGTGTCCCTTGTGCGGATCATTCCGTGAATCTAGGTTTCTAATGTTGAGATTTTCTGAAAAAGTAAAAATTATCGAATGTTTTTCTAACAAAATACAGTTTGATATTTTTCGTGTATTCTTTTTCTGTAATTTAGATTTGGAAAGTGGAAAATAAAGATTTAGAATTAAAAAAAATTTTAAATGTTCAGTGATGAAATCTGAAAAAAAGAAATTGAATGTTTCAAAAAATGACAATATTGGAAACAAATGTTTTCAAGATGTTGAACGCCCAATATTTTTTTCGAAATTTTTTTTGAGAATTTTCAGATTTCTTCAGATTTGTTTCGAAAGTTTTCAATTTGACAAAAAAAAACTTCA</canonical>
            <polymorphic>TGTAATTTCTGTTGAAAATTAGCTCACGAAATTCAAAATTCAGCGCCGTTTCTACAGATCGTTTTGAAAATCTTCAATCGCCAATATTCAAAGTTTTTGAAACAGTAAAAGTTTTTTTTTCAGAAATCAGAACAGGGAAAATTTAAGGATTTGGCCATTATAAGAATACATAAGAATAATTGGACGCTGGCAGAAAATATTCCTAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGAGAATCATCATAATGTCGCGATTGATCATTTTTCCAATTAAAGCAAAAAAAAACCGATTGAACCCTTTCATTGAAACTTTTTTTTTCAGAATTTGCAGGTTTTTGGTTTTTGCCGGTGGCCATATGTTTTCAGAAACAGAAAAGGAATTTTCAGCATTTTGAGATCCTGAAAATTTTTACTGTTTCAAAAAAGAGTAATATTGGAAACCAAGATTTCCAAATTAATAATATTTTTCCACAAAACAACATTTTTMAAAAATATGGTTTTTGGTGGATTTTCAGAATCATATATTTTGAAATCTTGAAATTGTAAAGTCAGACTTCGAACACAGTAATTTCTGTTGAAAACTGGCTCAATTAGGTTTTCAGTCGGTGACTTTAGAATTTGAAAATCGCAGTGTCCCTTGTGCGGATCATTCCGTGAATCTAGGTTTCTAATGTTGAGATTTTCTGAAAAAGTAAAAATTATCGAATGTTTTTCTAACAAAATACAGTTTGATATTTTTCGTGTATTCTTTTTCTGTAATTTAGATTTGGAAAGTGGAAAATAAAGATTTAGAATTAAAAAAAATTTTAAATGTTCAGTGATGAAATCTGAAAAAAAGAAATTGAATGTTTCAAAAAATGACAATATTGGAAACAAATGTTTTCAAGATGTTGAACGCCCAATATTTTTTTCGAAATTTTTTTTGAGAATTTTCAGATTTCTTCAGATTTGTTTCGAAAGTTTTCAATTTGACAAAAAAAAACTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAGGAATTTTCAGCATTT</pcr_primer_p1>
		<pcr_primer_p2>AAATTCTAAAGTCACCGACTGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAAAGGAATTTTCAGCATTTTGAGATCCTGAAAATTTTTACTGTTTCAAAAAAGAGTAATATTGGAAACCAAGATTTCCAAATTAATAATATTTTTCCACAAAACAACATTTTTGAAAAATATGGTTTTTGGTGGATTTTCAGAATCATATATTTTGAAATCTTGAAATTGTAAAGTCAGACTTCGAACACAGTAATTTCTGTTGAAAACTGGCTCAATTAGGTTTTCAGTCGGTGACTTTAGAATTT</canonical_amplicon>
		<polymorphic_amplicon>GAAAAGGAATTTTCAGCATTTTGAGATCCTGAAAATTTTTACTGTTTCAAAAAAGAGTAATATTGGAAACCAAGATTTCCAAATTAATAATATTTTTCCACAAAACAACATTTTTMAAAAATATGGTTTTTGGTGGATTTTCAGAATCATATATTTTGAAATCTTGAAATTGTAAAGTCAGACTTCGAACACAGTAATTTCTGTTGAAAACTGGCTCAATTAGGTTTTCAGTCGGTGACTTTAGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28684</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>43122</contig_pos>
        <strand>-</strand>
        <context>TTTMAAAAAT[A/T]TGGTTTTTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGATTTCCAAATTAATAATATTTTTCCACAAAACAACATTTTTGAAAAAT</left_flank>
        <right_flank>TGGTTTTTGGTGGATTTTCAGAATCATATATTTTGAAATCTTGAAATTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGTTGAAAATTAGCTCACGAAATTCAAAATTCAGCGCCGTTTCTACAGATCGTTTTGAAAATCTTCAATCGCCAATATTCAAAGTTTTTGAAACAGTAAAAGTTTTTTTTTCAGAAATCAGAACAGGGAAAATTTAAGGATTTGGCCATTATAAGAATACATAAGAATAATTGGACGCTGGCAGAAAATATTCCTAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGAGAATCATCATAATGTCGCGATTGATCATTTTTCCAATTAAAGCAAAAAAAAACCGATTGAACCCTTTCATTGAAACTTTTTTTTTCAGAATTTGCAGGTTTTTGGTTTTTGCCGGTGGCCATATGTTTTCAGAAACAGAAAAGGAATTTTCAGCATTTTGAGATCCTGAAAATTTTTACTGTTTCAAAAAAGAGTAATATTGGAAACCAAGATTTCCAAATTAATAATATTTTTCCACAAAACAACATTTTTGAAAAATATGGTTTTTGGTGGATTTTCAGAATCATATATTTTGAAATCTTGAAATTGTAAAGTCAGACTTCGAACACAGTAATTTCTGTTGAAAACTGGCTCAATTAGGTTTTCAGTCGGTGACTTTAGAATTTGAAAATCGCAGTGTCCCTTGTGCGGATCATTCCGTGAATCTAGGTTTCTAATGTTGAGATTTTCTGAAAAAGTAAAAATTATCGAATGTTTTTCTAACAAAATACAGTTTGATATTTTTCGTGTATTCTTTTTCTGTAATTTAGATTTGGAAAGTGGAAAATAAAGATTTAGAATTAAAAAAAATTTTAAATGTTCAGTGATGAAATCTGAAAAAAAGAAATTGAATGTTTCAAAAAATGACAATATTGGAAACAAATGTTTTCAAGATGTTGAACGCCCAATATTTTTTTCGAAATTTTTTTTGAGAATTTTCAGATTTCTTCAGATTTGTTTCGAAAGTTTTCAATTTGACAAAAAAAAACTTCAAAATATT</canonical>
            <polymorphic>TCTGTTGAAAATTAGCTCACGAAATTCAAAATTCAGCGCCGTTTCTACAGATCGTTTTGAAAATCTTCAATCGCCAATATTCAAAGTTTTTGAAACAGTAAAAGTTTTTTTTTCAGAAATCAGAACAGGGAAAATTTAAGGATTTGGCCATTATAAGAATACATAAGAATAATTGGACGCTGGCAGAAAATATTCCTAAACTTTCACTGTCCCAATTTCAGAAAATCAGAAATCTGGAGAGAATCATCATAATGTCGCGATTGATCATTTTTCCAATTAAAGCAAAAAAAAACCGATTGAACCCTTTCATTGAAACTTTTTTTTTCAGAATTTGCAGGTTTTTGGTTTTTGCCGGTGGCCATATGTTTTCAGAAACAGAAAAGGAATTTTCAGCATTTTGAGATCCTGAAAATTTTTACTGTTTCAAAAAAGAGTAATATTGGAAACCAAGATTTCCAAATTAATAATATTTTTCCACAAAACAACATTTTTGAAAAATWTGGTTTTTGGTGGATTTTCAGAATCATATATTTTGAAATCTTGAAATTGTAAAGTCAGACTTCGAACACAGTAATTTCTGTTGAAAACTGGCTCAATTAGGTTTTCAGTCGGTGACTTTAGAATTTGAAAATCGCAGTGTCCCTTGTGCGGATCATTCCGTGAATCTAGGTTTCTAATGTTGAGATTTTCTGAAAAAGTAAAAATTATCGAATGTTTTTCTAACAAAATACAGTTTGATATTTTTCGTGTATTCTTTTTCTGTAATTTAGATTTGGAAAGTGGAAAATAAAGATTTAGAATTAAAAAAAATTTTAAATGTTCAGTGATGAAATCTGAAAAAAAGAAATTGAATGTTTCAAAAAATGACAATATTGGAAACAAATGTTTTCAAGATGTTGAACGCCCAATATTTTTTTCGAAATTTTTTTTGAGAATTTTCAGATTTCTTCAGATTTGTTTCGAAAGTTTTCAATTTGACAAAAAAAAACTTCAAAATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAGGAATTTTCAGCATTT</pcr_primer_p1>
		<pcr_primer_p2>AAATTCTAAAGTCACCGACTGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAAAGGAATTTTCAGCATTTTGAGATCCTGAAAATTTTTACTGTTTCAAAAAAGAGTAATATTGGAAACCAAGATTTCCAAATTAATAATATTTTTCCACAAAACAACATTTTTGAAAAATATGGTTTTTGGTGGATTTTCAGAATCATATATTTTGAAATCTTGAAATTGTAAAGTCAGACTTCGAACACAGTAATTTCTGTTGAAAACTGGCTCAATTAGGTTTTCAGTCGGTGACTTTAGAATTT</canonical_amplicon>
		<polymorphic_amplicon>GAAAAGGAATTTTCAGCATTTTGAGATCCTGAAAATTTTTACTGTTTCAAAAAAGAGTAATATTGGAAACCAAGATTTCCAAATTAATAATATTTTTCCACAAAACAACATTTTTGAAAAATWTGGTTTTTGGTGGATTTTCAGAATCATATATTTTGAAATCTTGAAATTGTAAAGTCAGACTTCGAACACAGTAATTTCTGTTGAAAACTGGCTCAATTAGGTTTTCAGTCGGTGACTTTAGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28685</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>43406</contig_pos>
        <strand></strand>
        <context>TGGAAAGTGG[A/G]aaataaagat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGATATTTTTCGTGTATTCTTTTTCTGTAATTTAGATTTGGAAAGTGG</left_flank>
        <right_flank>AAATAAAGATTTAGAATTAAAAAAAATTTTAAATGTTCAGTGATGAAATC</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAAACCGATTGAACCCTTTCATTGAAACTTTTTTTTTCAGAATTTGCAGGTTTTTGGTTTTTGCCGGTGGCCATATGTTTTCAGAAACAGAAAAGGAATTTTCAGCATTTTGAGATCCTGAAAATTTTTACTGTTTCAAAAAAGAGTAATATTGGAAACCAAGATTTCCAAATTAATAATATTTTTCCACAAAACAACATTTTTGAAAAATATGGTTTTTGGTGGATTTTCAGAATCATATATTTTGAAATCTTGAAATTGTAAAGTCAGACTTCGAACACAGTAATTTCTGTTGAAAACTGGCTCAATTAGGTTTTCAGTCGGTGACTTTAGAATTTGAAAATCGCAGTGTCCCTTGTGCGGATCATTCCGTGAATCTAGGTTTCTAATGTTGAGATTTTCTGAAAAAGTAAAAATTATCGAATGTTTTTCTAACAAAATACAGTTTGATATTTTTCGTGTATTCTTTTTCTGTAATTTAGATTTGGAAAGTGGAAAATAAAGATTTAGAATTAAAAAAAATTTTAAATGTTCAGTGATGAAATCTGAAAAAAAGAAATTGAATGTTTCAAAAAATGACAATATTGGAAACAAATGTTTTCAAGATGTTGAACGCCCAATATTTTTTTCGAAATTTTTTTTGAGAATTTTCAGATTTCTTCAGATTTGTTTCGAAAGTTTTCAATTTGACAAAAAAAAACTTCAAAATATTTAGTAAACTAGCTCAATTAAATTTTCCCTTTGCGAATTTTTGAATTTTTCAAAACCCTGGATGTGTCTTCCTCTGAACATTTTTGAATGTTGACTTCAAATATTGAGATTCTTTGAAACAGTAAAAAATTGATTTCAGATTATCTAACAACTACTTCAGAATTTGGAACATGTCAAAGTTTCGAATATTCAAAAAGAATCAGACAAGAACGGTTCCAAAAGATTCTTACTGTTTCGATTTGAAAAAATCAATATTCCGGAGAATCCGATCATAATGACATAGAA</canonical>
            <polymorphic>AAAAAAAACCGATTGAACCCTTTCATTGAAACTTTTTTTTTCAGAATTTGCAGGTTTTTGGTTTTTGCCGGTGGCCATATGTTTTCAGAAACAGAAAAGGAATTTTCAGCATTTTGAGATCCTGAAAATTTTTACTGTTTCAAAAAAGAGTAATATTGGAAACCAAGATTTCCAAATTAATAATATTTTTCCACAAAACAACATTTTTGAAAAATATGGTTTTTGGTGGATTTTCAGAATCATATATTTTGAAATCTTGAAATTGTAAAGTCAGACTTCGAACACAGTAATTTCTGTTGAAAACTGGCTCAATTAGGTTTTCAGTCGGTGACTTTAGAATTTGAAAATCGCAGTGTCCCTTGTGCGGATCATTCCGTGAATCTAGGTTTCTAATGTTGAGATTTTCTGAAAAAGTAAAAATTATCGAATGTTTTTCTAACAAAATACAGTTTGATATTTTTCGTGTATTCTTTTTCTGTAATTTAGATTTGGAAAGTGGRAAATAAAGATTTAGAATTAAAAAAAATTTTAAATGTTCAGTGATGAAATCTGAAAAAAAGAAATTGAATGTTTCAAAAAATGACAATATTGGAAACAAATGTTTTCAAGATGTTGAACGCCCAATATTTTTTTCGAAATTTTTTTTGAGAATTTTCAGATTTCTTCAGATTTGTTTCGAAAGTTTTCAATTTGACAAAAAAAAACTTCAAAATATTTAGTAAACTAGCTCAATTAAATTTTCCCTTTGCGAATTTTTGAATTTTTCAAAACCCTGGATGTGTCTTCCTCTGAACATTTTTGAATGTTGACTTCAAATATTGAGATTCTTTGAAACAGTAAAAAATTGATTTCAGATTATCTAACAACTACTTCAGAATTTGGAACATGTCAAAGTTTCGAATATTCAAAAAGAATCAGACAAGAACGGTTCCAAAAGATTCTTACTGTTTCGATTTGAAAAAATCAATATTCCGGAGAATCCGATCATAATGACATAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGTCGGTGACTTTAGAATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCAGATTTCATCACTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>TCAGTCGGTGACTTTAGAATTTGAAAATCGCAGTGTCCCTTGTGCGGATCATTCCGTGAATCTAGGTTTCTAATGTTGAGATTTTCTGAAAAAGTAAAAATTATCGAATGTTTTTCTAACAAAATACAGTTTGATATTTTTCGTGTATTCTTTTTCTGTAATTTAGATTTGGAAAGTGGAAAATAAAGATTTAGAATTAAAAAAAATTTTAAATGTTCAGTGATGAAATCTGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCAGTCGGTGACTTTAGAATTTGAAAATCGCAGTGTCCCTTGTGCGGATCATTCCGTGAATCTAGGTTTCTAATGTTGAGATTTTCTGAAAAAGTAAAAATTATCGAATGTTTTTCTAACAAAATACAGTTTGATATTTTTCGTGTATTCTTTTTCTGTAATTTAGATTTGGAAAGTGGRAAATAAAGATTTAGAATTAAAAAAAATTTTAAATGTTCAGTGATGAAATCTGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28686</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>43425</contig_pos>
        <strand></strand>
        <context>atttagaatt[A/T]aaaaaaattt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTTTTTCTGTAATTTAGATTTGGAAAGTGGAAAATAAAGATTTAGAATT</left_flank>
        <right_flank>AAAAAAATTTTAAATGTTCAGTGATGAAATCTGAAAAAAAGAAATTGAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTCATTGAAACTTTTTTTTTCAGAATTTGCAGGTTTTTGGTTTTTGCCGGTGGCCATATGTTTTCAGAAACAGAAAAGGAATTTTCAGCATTTTGAGATCCTGAAAATTTTTACTGTTTCAAAAAAGAGTAATATTGGAAACCAAGATTTCCAAATTAATAATATTTTTCCACAAAACAACATTTTTGAAAAATATGGTTTTTGGTGGATTTTCAGAATCATATATTTTGAAATCTTGAAATTGTAAAGTCAGACTTCGAACACAGTAATTTCTGTTGAAAACTGGCTCAATTAGGTTTTCAGTCGGTGACTTTAGAATTTGAAAATCGCAGTGTCCCTTGTGCGGATCATTCCGTGAATCTAGGTTTCTAATGTTGAGATTTTCTGAAAAAGTAAAAATTATCGAATGTTTTTCTAACAAAATACAGTTTGATATTTTTCGTGTATTCTTTTTCTGTAATTTAGATTTGGAAAGTGGAAAATAAAGATTTAGAATTAAAAAAAATTTTAAATGTTCAGTGATGAAATCTGAAAAAAAGAAATTGAATGTTTCAAAAAATGACAATATTGGAAACAAATGTTTTCAAGATGTTGAACGCCCAATATTTTTTTCGAAATTTTTTTTGAGAATTTTCAGATTTCTTCAGATTTGTTTCGAAAGTTTTCAATTTGACAAAAAAAAACTTCAAAATATTTAGTAAACTAGCTCAATTAAATTTTCCCTTTGCGAATTTTTGAATTTTTCAAAACCCTGGATGTGTCTTCCTCTGAACATTTTTGAATGTTGACTTCAAATATTGAGATTCTTTGAAACAGTAAAAAATTGATTTCAGATTATCTAACAACTACTTCAGAATTTGGAACATGTCAAAGTTTCGAATATTCAAAAAGAATCAGACAAGAACGGTTCCAAAAGATTCTTACTGTTTCGATTTGAAAAAATCAATATTCCGGAGAATCCGATCATAATGACATAGAAGTTGTTTCTGGCTAGAATT</canonical>
            <polymorphic>CTTTCATTGAAACTTTTTTTTTCAGAATTTGCAGGTTTTTGGTTTTTGCCGGTGGCCATATGTTTTCAGAAACAGAAAAGGAATTTTCAGCATTTTGAGATCCTGAAAATTTTTACTGTTTCAAAAAAGAGTAATATTGGAAACCAAGATTTCCAAATTAATAATATTTTTCCACAAAACAACATTTTTGAAAAATATGGTTTTTGGTGGATTTTCAGAATCATATATTTTGAAATCTTGAAATTGTAAAGTCAGACTTCGAACACAGTAATTTCTGTTGAAAACTGGCTCAATTAGGTTTTCAGTCGGTGACTTTAGAATTTGAAAATCGCAGTGTCCCTTGTGCGGATCATTCCGTGAATCTAGGTTTCTAATGTTGAGATTTTCTGAAAAAGTAAAAATTATCGAATGTTTTTCTAACAAAATACAGTTTGATATTTTTCGTGTATTCTTTTTCTGTAATTTAGATTTGGAAAGTGGAAAATAAAGATTTAGAATTWAAAAAAATTTTAAATGTTCAGTGATGAAATCTGAAAAAAAGAAATTGAATGTTTCAAAAAATGACAATATTGGAAACAAATGTTTTCAAGATGTTGAACGCCCAATATTTTTTTCGAAATTTTTTTTGAGAATTTTCAGATTTCTTCAGATTTGTTTCGAAAGTTTTCAATTTGACAAAAAAAAACTTCAAAATATTTAGTAAACTAGCTCAATTAAATTTTCCCTTTGCGAATTTTTGAATTTTTCAAAACCCTGGATGTGTCTTCCTCTGAACATTTTTGAATGTTGACTTCAAATATTGAGATTCTTTGAAACAGTAAAAAATTGATTTCAGATTATCTAACAACTACTTCAGAATTTGGAACATGTCAAAGTTTCGAATATTCAAAAAGAATCAGACAAGAACGGTTCCAAAAGATTCTTACTGTTTCGATTTGAAAAAATCAATATTCCGGAGAATCCGATCATAATGACATAGAAGTTGTTTCTGGCTAGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>340 286 204 158 12</canonical_bands>
                <polymorphic_bands>352 286 204 158</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCGTGTATTCTTTTTCTGT</pcr_primer_p1>
		<pcr_primer_p2>AATTGAAAACTTTCGAAACAAAT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCGTGTATTCTTTTTCTGTAATTTAGATTTGGAAAGTGGAAAATAAAGATTTAGAATTAAAAAAAATTTTAAATGTTCAGTGATGAAATCTGAAAAAAAGAAATTGAATGTTTCAAAAAATGACAATATTGGAAACAAATGTTTTCAAGATGTTGAACGCCCAATATTTTTTTCGAAATTTTTTTTGAGAATTTTCAGATTTCTTCAGATTTGTTTCGAAAGTTTTCAATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCGTGTATTCTTTTTCTGTAATTTAGATTTGGAAAGTGGAAAATAAAGATTTAGAATTWAAAAAAATTTTAAATGTTCAGTGATGAAATCTGAAAAAAAGAAATTGAATGTTTCAAAAAATGACAATATTGGAAACAAATGTTTTCAAGATGTTGAACGCCCAATATTTTTTTCGAAATTTTTTTTGAGAATTTTCAGATTTCTTCAGATTTGTTTCGAAAGTTTTCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28687</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>59087</contig_pos>
        <strand>+</strand>
        <context>AATAAAAAAC[C/T]TTCAAATCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTAGGAATTTTTCTTGAAAAATTCTCATGTAATTGTCCGAATAAAAAAC</left_flank>
        <right_flank>TTCAAATCGGATTTTACGGGATTTTTTGGATTTTTCGAATTTTCATGAAT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATATCATTCCGAAGCTGTTATCAAGTCCTACATTTACCGATAAGAATTTTTGAAAAATTCGGTATTTGAACCAAGTTATGCGCTTTCAAAATAGACTCGATTTTTTCTCAGATTTCTTTGGATTTTTTTTCGAATTTTTACTGTTTCAAAAAATGGGGAAAACAAAATGCAAATAGTCTATGGCAATACCAGAGCACTTGGCTTCGCGTCACTTCGAAACCGCGACACTTCGAAACCAGTCATTTCGAAACTGCGANNNNNNNNNNTTCGAAGTGACGCGGAGCCGAGCACTTAATACTGTGTCCTAGACATCTGTAACTAGTGGCCTAGGCTTTGGTTTTTCTAGGCCATCCTTTCTGAAAATGCTGATTTTTGTCAATCGTTTTTTGAAAAGTCGCATTTTTCAGATTTTCTGAAATTTCAACAAAAAAAGAAGGGGTGGGGTTACTGTAGGAATTTTTCTTGAAAAATTCTCATGTAATTGTCCGAATAAAAAACTTTCAAATCGGATTTTACGGGATTTTTTGGATTTTTCGAATTTTCATGAATTTTCAAACTAACTATTTTCAGAATTTTTTTTTGGATTTTTGGAAGTGAACTAAATACTTAATTTATGGATTTTAAGATATTTTTCAGACTTCAAAATTCCAAAAAAATCTTTAAAATCGAAAAAAAAAATCTAAACTTACAAATGCGATCCTTATCCTCAAAATTGGAATACAGACTGCTTATAAAGGGGTGTCCATTGAGATCTTTAGTCATAAACTCCAGAATCTTCTTTTCCCGAATAATAGCTCCCATTTTCTGGTGCTTCATCAAATGCTCTTTTTCAAGAACCTTGATGGCAAAAGTGGCATTGGTGCCCACTTCGCGGCATCGAAACACCTGGAAATAGTTACATTTAAAGGCGCATAACTTGATTAAGATTTGGAATTTAAAAAAAAATTCAAATTGGAAAATATTGGACTTGAAAAGAGCTACAAAATGATATAAAACGAG</canonical>
            <polymorphic>TATATCATTCCGAAGCTGTTATCAAGTCCTACATTTACCGATAAGAATTTTTGAAAAATTCGGTATTTGAACCAAGTTATGCGCTTTCAAAATAGACTCGATTTTTTCTCAGATTTCTTTGGATTTTTTTTCGAATTTTTACTGTTTCAAAAAATGGGGAAAACAAAATGCAAATAGTCTATGGCAATACCAGAGCACTTGGCTTCGCGTCACTTCGAAACCGCGACACTTCGAAACCAGTCATTTCGAAACTGCGANNNNNNNNNNTTCGAAGTGACGCGGAGCCGAGCACTTAATACTGTGTCCTAGACATCTGTAACTAGTGGCCTAGGCTTTGGTTTTTCTAGGCCATCCTTTCTGAAAATGCTGATTTTTGTCAATCGTTTTTTGAAAAGTCGCATTTTTCAGATTTTCTGAAATTTCAACAAAAAAAGAAGGGGTGGGGTTACTGTAGGAATTTTTCTTGAAAAATTCTCATGTAATTGTCCGAATAAAAAACYTTCAAATCGGATTTTACGGGATTTTTTGGATTTTTCGAATTTTCATGAATTTTCAAACTAACTATTTTCAGAATTTTTTTTTGGATTTTTGGAAGTGAACTAAATACTTAATTTATGGATTTTAAGATATTTTTCAGACTTCAAAATTCCAAAAAAATCTTTAAAATCGAAAAAAAAAATCTAAACTTACAAATGCGATCCTTATCCTCAAAATTGGAATACAGACTGCTTATAAAGGGGTGTCCATTGAGATCTTTAGTCATAAACTCCAGAATCTTCTTTTCCCGAATAATAGCTCCCATTTTCTGGTGCTTCATCAAATGCTCTTTTTCAAGAACCTTGATGGCAAAAGTGGCATTGGTGCCCACTTCGCGGCATCGAAACACCTGGAAATAGTTACATTTAAAGGCGCATAACTTGATTAAGATTTGGAATTTAAAAAAAAATTCAAATTGGAAAATATTGGACTTGAAAAGAGCTACAAAATGATATAAAACGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGTTACTGTAGGAATTTTTCTT</pcr_primer_p1>
		<pcr_primer_p2>CGCATTTGTAAGTTTAGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>GGGTTACTGTAGGAATTTTTCTTGAAAAATTCTCATGTAATTGTCCGAATAAAAAACTTTCAAATCGGATTTTACGGGATTTTTTGGATTTTTCGAATTTTCATGAATTTTCAAACTAACTATTTTCAGAATTTTTTTTTGGATTTTTGGAAGTGAACTAAATACTTAATTTATGGATTTTAAGATATTTTTCAGACTTCAAAATTCCAAAAAAATCTTTAAAATCGAAAAAAAAAATCTAAACTTACAAATGCG</canonical_amplicon>
		<polymorphic_amplicon>GGGTTACTGTAGGAATTTTTCTTGAAAAATTCTCATGTAATTGTCCGAATAAAAAACYTTCAAATCGGATTTTACGGGATTTTTTGGATTTTTCGAATTTTCATGAATTTTCAAACTAACTATTTTCAGAATTTTTTTTTGGATTTTTGGAAGTGAACTAAATACTTAATTTATGGATTTTAAGATATTTTTCAGACTTCAAAATTCCAAAAAAATCTTTAAAATCGAAAAAAAAAATCTAAACTTACAAATGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28688</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>59185</contig_pos>
        <strand>+</strand>
        <context>TTTGGAAGTG[C/T]ACTAAATACT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTTCAAACTAACTATTTTCAGAATTTTTTTTTGGATTTTTGGAAGTG</left_flank>
        <right_flank>ACTAAATACTTAATTTATGGATTTTAAGATATTTTTCAGACTTCAAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATTTTTTCTCAGATTTCTTTGGATTTTTTTTCGAATTTTTACTGTTTCAAAAAATGGGGAAAACAAAATGCAAATAGTCTATGGCAATACCAGAGCACTTGGCTTCGCGTCACTTCGAAACCGCGACACTTCGAAACCAGTCATTTCGAAACTGCGANNNNNNNNNNTTCGAAGTGACGCGGAGCCGAGCACTTAATACTGTGTCCTAGACATCTGTAACTAGTGGCCTAGGCTTTGGTTTTTCTAGGCCATCCTTTCTGAAAATGCTGATTTTTGTCAATCGTTTTTTGAAAAGTCGCATTTTTCAGATTTTCTGAAATTTCAACAAAAAAAGAAGGGGTGGGGTTACTGTAGGAATTTTTCTTGAAAAATTCTCATGTAATTGTCCGAATAAAAAACTTTCAAATCGGATTTTACGGGATTTTTTGGATTTTTCGAATTTTCATGAATTTTCAAACTAACTATTTTCAGAATTTTTTTTTGGATTTTTGGAAGTGAACTAAATACTTAATTTATGGATTTTAAGATATTTTTCAGACTTCAAAATTCCAAAAAAATCTTTAAAATCGAAAAAAAAAATCTAAACTTACAAATGCGATCCTTATCCTCAAAATTGGAATACAGACTGCTTATAAAGGGGTGTCCATTGAGATCTTTAGTCATAAACTCCAGAATCTTCTTTTCCCGAATAATAGCTCCCATTTTCTGGTGCTTCATCAAATGCTCTTTTTCAAGAACCTTGATGGCAAAAGTGGCATTGGTGCCCACTTCGCGGCATCGAAACACCTGGAAATAGTTACATTTAAAGGCGCATAACTTGATTAAGATTTGGAATTTAAAAAAAAATTCAAATTGGAAAATATTGGACTTGAAAAGAGCTACAAAATGATATAAAACGAGGCTAGGTTTGAAAGTTGGTAAGACATTTAAAATTGAAATTTCTAGAAGTATGGAAATCTGGAGTGTGGTCATGTTTTATATCATTCTGAAGCTCTTTT</canonical>
            <polymorphic>CGATTTTTTCTCAGATTTCTTTGGATTTTTTTTCGAATTTTTACTGTTTCAAAAAATGGGGAAAACAAAATGCAAATAGTCTATGGCAATACCAGAGCACTTGGCTTCGCGTCACTTCGAAACCGCGACACTTCGAAACCAGTCATTTCGAAACTGCGANNNNNNNNNNTTCGAAGTGACGCGGAGCCGAGCACTTAATACTGTGTCCTAGACATCTGTAACTAGTGGCCTAGGCTTTGGTTTTTCTAGGCCATCCTTTCTGAAAATGCTGATTTTTGTCAATCGTTTTTTGAAAAGTCGCATTTTTCAGATTTTCTGAAATTTCAACAAAAAAAGAAGGGGTGGGGTTACTGTAGGAATTTTTCTTGAAAAATTCTCATGTAATTGTCCGAATAAAAAACTTTCAAATCGGATTTTACGGGATTTTTTGGATTTTTCGAATTTTCATGAATTTTCAAACTAACTATTTTCAGAATTTTTTTTTGGATTTTTGGAAGTGYACTAAATACTTAATTTATGGATTTTAAGATATTTTTCAGACTTCAAAATTCCAAAAAAATCTTTAAAATCGAAAAAAAAAATCTAAACTTACAAATGCGATCCTTATCCTCAAAATTGGAATACAGACTGCTTATAAAGGGGTGTCCATTGAGATCTTTAGTCATAAACTCCAGAATCTTCTTTTCCCGAATAATAGCTCCCATTTTCTGGTGCTTCATCAAATGCTCTTTTTCAAGAACCTTGATGGCAAAAGTGGCATTGGTGCCCACTTCGCGGCATCGAAACACCTGGAAATAGTTACATTTAAAGGCGCATAACTTGATTAAGATTTGGAATTTAAAAAAAAATTCAAATTGGAAAATATTGGACTTGAAAAGAGCTACAAAATGATATAAAACGAGGCTAGGTTTGAAAGTTGGTAAGACATTTAAAATTGAAATTTCTAGAAGTATGGAAATCTGGAGTGTGGTCATGTTTTATATCATTCTGAAGCTCTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCATGTAATTGTCCGAATAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGTATTCCAATTTTGAGGATAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCATGTAATTGTCCGAATAAAAAACTTTCAAATCGGATTTTACGGGATTTTTTGGATTTTTCGAATTTTCATGAATTTTCAAACTAACTATTTTCAGAATTTTTTTTTGGATTTTTGGAAGTGAACTAAATACTTAATTTATGGATTTTAAGATATTTTTCAGACTTCAAAATTCCAAAAAAATCTTTAAAATCGAAAAAAAAAATCTAAACTTACAAATGCGATCCTTATCCTCAAAATTGGAATACA</canonical_amplicon>
		<polymorphic_amplicon>CTCATGTAATTGTCCGAATAAAAAACTTTCAAATCGGATTTTACGGGATTTTTTGGATTTTTCGAATTTTCATGAATTTTCAAACTAACTATTTTCAGAATTTTTTTTTGGATTTTTGGAAGTGYACTAAATACTTAATTTATGGATTTTAAGATATTTTTCAGACTTCAAAATTCCAAAAAAATCTTTAAAATCGAAAAAAAAAATCTAAACTTACAAATGCGATCCTTATCCTCAAAATTGGAATACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28689</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>83500</contig_pos>
        <strand>+</strand>
        <context>TATACGACAA[G/T]GTTTTCTAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACACAAAATTAAATTCAAAATTTCGAATTTCTAATTCCAATATACGACAA</left_flank>
        <right_flank>GTTTTCTAAATTTCGATTGTCAGCTAGTCGAAATGTTTTTCGAAATTACA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACCTTCTTGGAGCACCAGCAATCGTTCCGCCGAGCCGTGAGTCTCTACGAAGTGCCTAGAAGAGCTACAGTAACCCATTGGAAACTTATCTACAGTAATCCAATTTTTTTCTACAATAGCCGAGATTTAGTAGTATTTTTTACTGTAGTTTTTCATCATTACTGTAGTTTTCTAAACATTTCAGGTTCAAAAAATTTTGAAACAGAAAACAAATGGTTATCTTGAAAATTCAGAAATCTGAATTTTTCAGAAATTCAGGTGTTTCAAAATTTTCCTATGTTTTTGAGATACCGTAAAACCTGTATTAGAAGGAACCTTTCAATAGGGTCCCTCTAATAGAAAGGCCCTCCGAGAGACGCTTGGAAAAATAGAAGGGCCGGCCCTTCTAATACAGGTCTTACGGTATTTGGGTTTGCAAAGTTTCAAAAAATTACTGTTTCAAATTTAACACAAAATTAAATTCAAAATTTCGAATTTCTAATTCCAATATACGACAATGTTTTCTAAATTTCGATTGTCAGCTAGTCGAAATGTTTTTCGAAATTACAGTAATCCTCTTTTTCTTTCTACCGTAATCCTTATATTTTGTCCCCGTAAGTCTATTTTTTCTATATCTCTAGATCCACATGACAATACAAATTTTCAAATCTAGTTATTTTTTTCCCCCAAAGATCTCTGTGAAACCCCAAAAAATTATTGTTCTATACATATTTTTTCTTCGTTTTTCTGTGTACCGTACACACACTCTAATAGAACGCCACCCGAAGCGCCAACTTTGAGCTCATGTATCTCATTTCCTGTGAGAGATATCAAAAACAAGTCAACTAATAAAATGTTGCTGATATCATGATAAGCATTTTATCAGTTGACAACTTTTTGATATCTTTCAAAAGAAGTGAGATATTCAGGCTCAAAGTGAACGGTCTCCGGGTGCCGTTCCATTAGAGTCTTTACGGTTTTTTTTTGAATTTCTATATTTTCAAATCCGTTGATTTTTT</canonical>
            <polymorphic>TAACCTTCTTGGAGCACCAGCAATCGTTCCGCCGAGCCGTGAGTCTCTACGAAGTGCCTAGAAGAGCTACAGTAACCCATTGGAAACTTATCTACAGTAATCCAATTTTTTTCTACAATAGCCGAGATTTAGTAGTATTTTTTACTGTAGTTTTTCATCATTACTGTAGTTTTCTAAACATTTCAGGTTCAAAAAATTTTGAAACAGAAAACAAATGGTTATCTTGAAAATTCAGAAATCTGAATTTTTCAGAAATTCAGGTGTTTCAAAATTTTCCTATGTTTTTGAGATACCGTAAAACCTGTATTAGAAGGAACCTTTCAATAGGGTCCCTCTAATAGAAAGGCCCTCCGAGAGACGCTTGGAAAAATAGAAGGGCCGGCCCTTCTAATACAGGTCTTACGGTATTTGGGTTTGCAAAGTTTCAAAAAATTACTGTTTCAAATTTAACACAAAATTAAATTCAAAATTTCGAATTTCTAATTCCAATATACGACAAKGTTTTCTAAATTTCGATTGTCAGCTAGTCGAAATGTTTTTCGAAATTACAGTAATCCTCTTTTTCTTTCTACCGTAATCCTTATATTTTGTCCCCGTAAGTCTATTTTTTCTATATCTCTAGATCCACATGACAATACAAATTTTCAAATCTAGTTATTTTTTTCCCCCAAAGATCTCTGTGAAACCCCAAAAAATTATTGTTCTATACATATTTTTTCTTCGTTTTTCTGTGTACCGTACACACACTCTAATAGAACGCCACCCGAAGCGCCAACTTTGAGCTCATGTATCTCATTTCCTGTGAGAGATATCAAAAACAAGTCAACTAATAAAATGTTGCTGATATCATGATAAGCATTTTATCAGTTGACAACTTTTTGATATCTTTCAAAAGAAGTGAGATATTCAGGCTCAAAGTGAACGGTCTCCGGGTGCCGTTCCATTAGAGTCTTTACGGTTTTTTTTTGAATTTCTATATTTTCAAATCCGTTGATTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTCAAAATTTTCCTATGTTT</pcr_primer_p1>
		<pcr_primer_p2>GGATTACGGTAGAAAGAAAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>319</pcr_amplicon_size>
		<canonical_amplicon>TGTTTCAAAATTTTCCTATGTTTTTGAGATACCGTAAAACCTGTATTAGAAGGAACCTTTCAATAGGGTCCCTCTAATAGAAAGGCCCTCCGAGAGACGCTTGGAAAAATAGAAGGGCCGGCCCTTCTAATACAGGTCTTACGGTATTTGGGTTTGCAAAGTTTCAAAAAATTACTGTTTCAAATTTAACACAAAATTAAATTCAAAATTTCGAATTTCTAATTCCAATATACGACAATGTTTTCTAAATTTCGATTGTCAGCTAGTCGAAATGTTTTTCGAAATTACAGTAATCCTCTTTTTCTTTCTACCGTAATCC</canonical_amplicon>
		<polymorphic_amplicon>TGTTTCAAAATTTTCCTATGTTTTTGAGATACCGTAAAACCTGTATTAGAAGGAACCTTTCAATAGGGTCCCTCTAATAGAAAGGCCCTCCGAGAGACGCTTGGAAAAATAGAAGGGCCGGCCCTTCTAATACAGGTCTTACGGTATTTGGGTTTGCAAAGTTTCAAAAAATTACTGTTTCAAATTTAACACAAAATTAAATTCAAAATTTCGAATTTCTAATTCCAATATACGACAAKGTTTTCTAAATTTCGATTGTCAGCTAGTCGAAATGTTTTTCGAAATTACAGTAATCCTCTTTTTCTTTCTACCGTAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28690</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>83556</contig_pos>
        <strand>+</strand>
        <context>TTACAGTAAT[C/T]CTCTTTTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAAATTTCGATTGTCAGCTAGTCGAAATGTTTTTCGAAATTACAGTAAT</left_flank>
        <right_flank>CTCTTTTTCTTTCTACCGTAATCCTTATATTTTGTCCCCGTAAGTCTATT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTAGAAGAGCTACAGTAACCCATTGGAAACTTATCTACAGTAATCCAATTTTTTTCTACAATAGCCGAGATTTAGTAGTATTTTTTACTGTAGTTTTTCATCATTACTGTAGTTTTCTAAACATTTCAGGTTCAAAAAATTTTGAAACAGAAAACAAATGGTTATCTTGAAAATTCAGAAATCTGAATTTTTCAGAAATTCAGGTGTTTCAAAATTTTCCTATGTTTTTGAGATACCGTAAAACCTGTATTAGAAGGAACCTTTCAATAGGGTCCCTCTAATAGAAAGGCCCTCCGAGAGACGCTTGGAAAAATAGAAGGGCCGGCCCTTCTAATACAGGTCTTACGGTATTTGGGTTTGCAAAGTTTCAAAAAATTACTGTTTCAAATTTAACACAAAATTAAATTCAAAATTTCGAATTTCTAATTCCAATATACGACAATGTTTTCTAAATTTCGATTGTCAGCTAGTCGAAATGTTTTTCGAAATTACAGTAATCCTCTTTTTCTTTCTACCGTAATCCTTATATTTTGTCCCCGTAAGTCTATTTTTTCTATATCTCTAGATCCACATGACAATACAAATTTTCAAATCTAGTTATTTTTTTCCCCCAAAGATCTCTGTGAAACCCCAAAAAATTATTGTTCTATACATATTTTTTCTTCGTTTTTCTGTGTACCGTACACACACTCTAATAGAACGCCACCCGAAGCGCCAACTTTGAGCTCATGTATCTCATTTCCTGTGAGAGATATCAAAAACAAGTCAACTAATAAAATGTTGCTGATATCATGATAAGCATTTTATCAGTTGACAACTTTTTGATATCTTTCAAAAGAAGTGAGATATTCAGGCTCAAAGTGAACGGTCTCCGGGTGCCGTTCCATTAGAGTCTTTACGGTTTTTTTTTGAATTTCTATATTTTCAAATCCGTTGATTTTTTTTTAATTTTAAATAAAACACCTTTTCTTTTTTTAGTATTTGTTGTCACTTTTCCAA</canonical>
            <polymorphic>CCTAGAAGAGCTACAGTAACCCATTGGAAACTTATCTACAGTAATCCAATTTTTTTCTACAATAGCCGAGATTTAGTAGTATTTTTTACTGTAGTTTTTCATCATTACTGTAGTTTTCTAAACATTTCAGGTTCAAAAAATTTTGAAACAGAAAACAAATGGTTATCTTGAAAATTCAGAAATCTGAATTTTTCAGAAATTCAGGTGTTTCAAAATTTTCCTATGTTTTTGAGATACCGTAAAACCTGTATTAGAAGGAACCTTTCAATAGGGTCCCTCTAATAGAAAGGCCCTCCGAGAGACGCTTGGAAAAATAGAAGGGCCGGCCCTTCTAATACAGGTCTTACGGTATTTGGGTTTGCAAAGTTTCAAAAAATTACTGTTTCAAATTTAACACAAAATTAAATTCAAAATTTCGAATTTCTAATTCCAATATACGACAATGTTTTCTAAATTTCGATTGTCAGCTAGTCGAAATGTTTTTCGAAATTACAGTAATYCTCTTTTTCTTTCTACCGTAATCCTTATATTTTGTCCCCGTAAGTCTATTTTTTCTATATCTCTAGATCCACATGACAATACAAATTTTCAAATCTAGTTATTTTTTTCCCCCAAAGATCTCTGTGAAACCCCAAAAAATTATTGTTCTATACATATTTTTTCTTCGTTTTTCTGTGTACCGTACACACACTCTAATAGAACGCCACCCGAAGCGCCAACTTTGAGCTCATGTATCTCATTTCCTGTGAGAGATATCAAAAACAAGTCAACTAATAAAATGTTGCTGATATCATGATAAGCATTTTATCAGTTGACAACTTTTTGATATCTTTCAAAAGAAGTGAGATATTCAGGCTCAAAGTGAACGGTCTCCGGGTGCCGTTCCATTAGAGTCTTTACGGTTTTTTTTTGAATTTCTATATTTTCAAATCCGTTGATTTTTTTTTAATTTTAAATAAAACACCTTTTCTTTTTTTAGTATTTGTTGTCACTTTTCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCTAAATTTCGATTGTCAG</pcr_primer_p1>
		<pcr_primer_p2>TTGAAAATTTGTATTGTCATGTG</pcr_primer_p2>
		<pcr_amplicon_size>148</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCTAAATTTCGATTGTCAGCTAGTCGAAATGTTTTTCGAAATTACAGTAATCCTCTTTTTCTTTCTACCGTAATCCTTATATTTTGTCCCCGTAAGTCTATTTTTTCTATATCTCTAGATCCACATGACAATACAAATTTTCAA</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCTAAATTTCGATTGTCAGCTAGTCGAAATGTTTTTCGAAATTACAGTAATYCTCTTTTTCTTTCTACCGTAATCCTTATATTTTGTCCCCGTAAGTCTATTTTTTCTATATCTCTAGATCCACATGACAATACAAATTTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28691</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>83581</contig_pos>
        <strand>+</strand>
        <context>ACCGTAATCC[C/T]TATATTTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATGTTTTTCGAAATTACAGTAATCCTCTTTTTCTTTCTACCGTAATCC</left_flank>
        <right_flank>TATATTTTGTCCCCGTAAGTCTATTTTTTCTATATCTCTAGATCCACATG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAACTTATCTACAGTAATCCAATTTTTTTCTACAATAGCCGAGATTTAGTAGTATTTTTTACTGTAGTTTTTCATCATTACTGTAGTTTTCTAAACATTTCAGGTTCAAAAAATTTTGAAACAGAAAACAAATGGTTATCTTGAAAATTCAGAAATCTGAATTTTTCAGAAATTCAGGTGTTTCAAAATTTTCCTATGTTTTTGAGATACCGTAAAACCTGTATTAGAAGGAACCTTTCAATAGGGTCCCTCTAATAGAAAGGCCCTCCGAGAGACGCTTGGAAAAATAGAAGGGCCGGCCCTTCTAATACAGGTCTTACGGTATTTGGGTTTGCAAAGTTTCAAAAAATTACTGTTTCAAATTTAACACAAAATTAAATTCAAAATTTCGAATTTCTAATTCCAATATACGACAATGTTTTCTAAATTTCGATTGTCAGCTAGTCGAAATGTTTTTCGAAATTACAGTAATCCTCTTTTTCTTTCTACCGTAATCCTTATATTTTGTCCCCGTAAGTCTATTTTTTCTATATCTCTAGATCCACATGACAATACAAATTTTCAAATCTAGTTATTTTTTTCCCCCAAAGATCTCTGTGAAACCCCAAAAAATTATTGTTCTATACATATTTTTTCTTCGTTTTTCTGTGTACCGTACACACACTCTAATAGAACGCCACCCGAAGCGCCAACTTTGAGCTCATGTATCTCATTTCCTGTGAGAGATATCAAAAACAAGTCAACTAATAAAATGTTGCTGATATCATGATAAGCATTTTATCAGTTGACAACTTTTTGATATCTTTCAAAAGAAGTGAGATATTCAGGCTCAAAGTGAACGGTCTCCGGGTGCCGTTCCATTAGAGTCTTTACGGTTTTTTTTTGAATTTCTATATTTTCAAATCCGTTGATTTTTTTTTAATTTTAAATAAAACACCTTTTCTTTTTTTAGTATTTGTTGTCACTTTTCCAAAGGTCTAAACACCCTTTTATAATAC</canonical>
            <polymorphic>GGAAACTTATCTACAGTAATCCAATTTTTTTCTACAATAGCCGAGATTTAGTAGTATTTTTTACTGTAGTTTTTCATCATTACTGTAGTTTTCTAAACATTTCAGGTTCAAAAAATTTTGAAACAGAAAACAAATGGTTATCTTGAAAATTCAGAAATCTGAATTTTTCAGAAATTCAGGTGTTTCAAAATTTTCCTATGTTTTTGAGATACCGTAAAACCTGTATTAGAAGGAACCTTTCAATAGGGTCCCTCTAATAGAAAGGCCCTCCGAGAGACGCTTGGAAAAATAGAAGGGCCGGCCCTTCTAATACAGGTCTTACGGTATTTGGGTTTGCAAAGTTTCAAAAAATTACTGTTTCAAATTTAACACAAAATTAAATTCAAAATTTCGAATTTCTAATTCCAATATACGACAATGTTTTCTAAATTTCGATTGTCAGCTAGTCGAAATGTTTTTCGAAATTACAGTAATCCTCTTTTTCTTTCTACCGTAATCCYTATATTTTGTCCCCGTAAGTCTATTTTTTCTATATCTCTAGATCCACATGACAATACAAATTTTCAAATCTAGTTATTTTTTTCCCCCAAAGATCTCTGTGAAACCCCAAAAAATTATTGTTCTATACATATTTTTTCTTCGTTTTTCTGTGTACCGTACACACACTCTAATAGAACGCCACCCGAAGCGCCAACTTTGAGCTCATGTATCTCATTTCCTGTGAGAGATATCAAAAACAAGTCAACTAATAAAATGTTGCTGATATCATGATAAGCATTTTATCAGTTGACAACTTTTTGATATCTTTCAAAAGAAGTGAGATATTCAGGCTCAAAGTGAACGGTCTCCGGGTGCCGTTCCATTAGAGTCTTTACGGTTTTTTTTTGAATTTCTATATTTTCAAATCCGTTGATTTTTTTTTAATTTTAAATAAAACACCTTTTCTTTTTTTAGTATTTGTTGTCACTTTTCCAAAGGTCTAAACACCCTTTTATAATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCTAAATTTCGATTGTCAG</pcr_primer_p1>
		<pcr_primer_p2>TTGAAAATTTGTATTGTCATGTG</pcr_primer_p2>
		<pcr_amplicon_size>148</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCTAAATTTCGATTGTCAGCTAGTCGAAATGTTTTTCGAAATTACAGTAATCCTCTTTTTCTTTCTACCGTAATCCTTATATTTTGTCCCCGTAAGTCTATTTTTTCTATATCTCTAGATCCACATGACAATACAAATTTTCAA</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCTAAATTTCGATTGTCAGCTAGTCGAAATGTTTTTCGAAATTACAGTAATCCTCTTTTTCTTTCTACCGTAATCCYTATATTTTGTCCCCGTAAGTCTATTTTTTCTATATCTCTAGATCCACATGACAATACAAATTTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28692</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>83726</contig_pos>
        <strand>+</strand>
        <context>TTTCTTCGTT[A/T]TTCTGTGTac</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCTGTGAAACCCCAAAAAATTATTGTTCTATACATATTTTTTCTTCGTT</left_flank>
        <right_flank>TTCTGTGTACCGTACACACACTCTAATAGAACGCCACCCGAAGCGCCAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTCAGAAATCTGAATTTTTCAGAAATTCAGGTGTTTCAAAATTTTCCTATGTTTTTGAGATACCGTAAAACCTGTATTAGAAGGAACCTTTCAATAGGGTCCCTCTAATAGAAAGGCCCTCCGAGAGACGCTTGGAAAAATAGAAGGGCCGGCCCTTCTAATACAGGTCTTACGGTATTTGGGTTTGCAAAGTTTCAAAAAATTACTGTTTCAAATTTAACACAAAATTAAATTCAAAATTTCGAATTTCTAATTCCAATATACGACAATGTTTTCTAAATTTCGATTGTCAGCTAGTCGAAATGTTTTTCGAAATTACAGTAATCCTCTTTTTCTTTCTACCGTAATCCTTATATTTTGTCCCCGTAAGTCTATTTTTTCTATATCTCTAGATCCACATGACAATACAAATTTTCAAATCTAGTTATTTTTTTCCCCCAAAGATCTCTGTGAAACCCCAAAAAATTATTGTTCTATACATATTTTTTCTTCGTTTTTCTGTGTACCGTACACACACTCTAATAGAACGCCACCCGAAGCGCCAACTTTGAGCTCATGTATCTCATTTCCTGTGAGAGATATCAAAAACAAGTCAACTAATAAAATGTTGCTGATATCATGATAAGCATTTTATCAGTTGACAACTTTTTGATATCTTTCAAAAGAAGTGAGATATTCAGGCTCAAAGTGAACGGTCTCCGGGTGCCGTTCCATTAGAGTCTTTACGGTTTTTTTTTGAATTTCTATATTTTCAAATCCGTTGATTTTTTTTTAATTTTAAATAAAACACCTTTTCTTTTTTTAGTATTTGTTGTCACTTTTCCAAAGGTCTAAACACCCTTTTATAATACCGTTTTCTTTTTTTGCTTCTCTGCGTCTCTAATTTTTCTATACTCTCTCAATTTCAGTTTCTGGGAGAGCTCTCAAAAAATGTCTTTTCGTGATCATGCCAATCGTCAAAATCACCGAGAACCAGAGGAATATGGGAGGTTGGTT</canonical>
            <polymorphic>AAAATTCAGAAATCTGAATTTTTCAGAAATTCAGGTGTTTCAAAATTTTCCTATGTTTTTGAGATACCGTAAAACCTGTATTAGAAGGAACCTTTCAATAGGGTCCCTCTAATAGAAAGGCCCTCCGAGAGACGCTTGGAAAAATAGAAGGGCCGGCCCTTCTAATACAGGTCTTACGGTATTTGGGTTTGCAAAGTTTCAAAAAATTACTGTTTCAAATTTAACACAAAATTAAATTCAAAATTTCGAATTTCTAATTCCAATATACGACAATGTTTTCTAAATTTCGATTGTCAGCTAGTCGAAATGTTTTTCGAAATTACAGTAATCCTCTTTTTCTTTCTACCGTAATCCTTATATTTTGTCCCCGTAAGTCTATTTTTTCTATATCTCTAGATCCACATGACAATACAAATTTTCAAATCTAGTTATTTTTTTCCCCCAAAGATCTCTGTGAAACCCCAAAAAATTATTGTTCTATACATATTTTTTCTTCGTTWTTCTGTGTACCGTACACACACTCTAATAGAACGCCACCCGAAGCGCCAACTTTGAGCTCATGTATCTCATTTCCTGTGAGAGATATCAAAAACAAGTCAACTAATAAAATGTTGCTGATATCATGATAAGCATTTTATCAGTTGACAACTTTTTGATATCTTTCAAAAGAAGTGAGATATTCAGGCTCAAAGTGAACGGTCTCCGGGTGCCGTTCCATTAGAGTCTTTACGGTTTTTTTTTGAATTTCTATATTTTCAAATCCGTTGATTTTTTTTTAATTTTAAATAAAACACCTTTTCTTTTTTTAGTATTTGTTGTCACTTTTCCAAAGGTCTAAACACCCTTTTATAATACCGTTTTCTTTTTTTGCTTCTCTGCGTCTCTAATTTTTCTATACTCTCTCAATTTCAGTTTCTGGGAGAGCTCTCAAAAAATGTCTTTTCGTGATCATGCCAATCGTCAAAATCACCGAGAACCAGAGGAATATGGGAGGTTGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCAAAGATCTCTGTGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTGGAAAAGTGACAACAAATACT</pcr_primer_p2>
		<pcr_amplicon_size>390</pcr_amplicon_size>
		<canonical_amplicon>CCCAAAGATCTCTGTGAAACCCCAAAAAATTATTGTTCTATACATATTTTTTCTTCGTTTTTCTGTGTACCGTACACACACTCTAATAGAACGCCACCCGAAGCGCCAACTTTGAGCTCATGTATCTCATTTCCTGTGAGAGATATCAAAAACAAGTCAACTAATAAAATGTTGCTGATATCATGATAAGCATTTTATCAGTTGACAACTTTTTGATATCTTTCAAAAGAAGTGAGATATTCAGGCTCAAAGTGAACGGTCTCCGGGTGCCGTTCCATTAGAGTCTTTACGGTTTTTTTTTGAATTTCTATATTTTCAAATCCGTTGATTTTTTTTTAATTTTAAATAAAACACCTTTTCTTTTTTTAGTATTTGTTGTCACTTTTCCAA</canonical_amplicon>
		<polymorphic_amplicon>CCCAAAGATCTCTGTGAAACCCCAAAAAATTATTGTTCTATACATATTTTTTCTTCGTTWTTCTGTGTACCGTACACACACTCTAATAGAACGCCACCCGAAGCGCCAACTTTGAGCTCATGTATCTCATTTCCTGTGAGAGATATCAAAAACAAGTCAACTAATAAAATGTTGCTGATATCATGATAAGCATTTTATCAGTTGACAACTTTTTGATATCTTTCAAAAGAAGTGAGATATTCAGGCTCAAAGTGAACGGTCTCCGGGTGCCGTTCCATTAGAGTCTTTACGGTTTTTTTTTGAATTTCTATATTTTCAAATCCGTTGATTTTTTTTTAATTTTAAATAAAACACCTTTTCTTTTTTTAGTATTTGTTGTCACTTTTCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28693</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>83779</contig_pos>
        <strand></strand>
        <context>gcgccaactt[T/C]gagctcatgt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTGTGTACCGTACACACACTCTAATAGAACGCCACCCGAAGCGCCAACTT</left_flank>
        <right_flank>GAGCTCATGTATCTCATTTCCTGTGAGAGATATCAAAAACAAGTCAACTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTTTGAGATACCGTAAAACCTGTATTAGAAGGAACCTTTCAATAGGGTCCCTCTAATAGAAAGGCCCTCCGAGAGACGCTTGGAAAAATAGAAGGGCCGGCCCTTCTAATACAGGTCTTACGGTATTTGGGTTTGCAAAGTTTCAAAAAATTACTGTTTCAAATTTAACACAAAATTAAATTCAAAATTTCGAATTTCTAATTCCAATATACGACAATGTTTTCTAAATTTCGATTGTCAGCTAGTCGAAATGTTTTTCGAAATTACAGTAATCCTCTTTTTCTTTCTACCGTAATCCTTATATTTTGTCCCCGTAAGTCTATTTTTTCTATATCTCTAGATCCACATGACAATACAAATTTTCAAATCTAGTTATTTTTTTCCCCCAAAGATCTCTGTGAAACCCCAAAAAATTATTGTTCTATACATATTTTTTCTTCGTTTTTCTGTGTACCGTACACACACTCTAATAGAACGCCACCCGAAGCGCCAACTTTGAGCTCATGTATCTCATTTCCTGTGAGAGATATCAAAAACAAGTCAACTAATAAAATGTTGCTGATATCATGATAAGCATTTTATCAGTTGACAACTTTTTGATATCTTTCAAAAGAAGTGAGATATTCAGGCTCAAAGTGAACGGTCTCCGGGTGCCGTTCCATTAGAGTCTTTACGGTTTTTTTTTGAATTTCTATATTTTCAAATCCGTTGATTTTTTTTTAATTTTAAATAAAACACCTTTTCTTTTTTTAGTATTTGTTGTCACTTTTCCAAAGGTCTAAACACCCTTTTATAATACCGTTTTCTTTTTTTGCTTCTCTGCGTCTCTAATTTTTCTATACTCTCTCAATTTCAGTTTCTGGGAGAGCTCTCAAAAAATGTCTTTTCGTGATCATGCCAATCGTCAAAATCACCGAGAACCAGAGGAATATGGGAGGTTGGTTTTTTTTTTTAATTTGAAAATTTTGAATATAGAAAATTGAACAAATTTGAGACA</canonical>
            <polymorphic>TGTTTTTGAGATACCGTAAAACCTGTATTAGAAGGAACCTTTCAATAGGGTCCCTCTAATAGAAAGGCCCTCCGAGAGACGCTTGGAAAAATAGAAGGGCCGGCCCTTCTAATACAGGTCTTACGGTATTTGGGTTTGCAAAGTTTCAAAAAATTACTGTTTCAAATTTAACACAAAATTAAATTCAAAATTTCGAATTTCTAATTCCAATATACGACAATGTTTTCTAAATTTCGATTGTCAGCTAGTCGAAATGTTTTTCGAAATTACAGTAATCCTCTTTTTCTTTCTACCGTAATCCTTATATTTTGTCCCCGTAAGTCTATTTTTTCTATATCTCTAGATCCACATGACAATACAAATTTTCAAATCTAGTTATTTTTTTCCCCCAAAGATCTCTGTGAAACCCCAAAAAATTATTGTTCTATACATATTTTTTCTTCGTTTTTCTGTGTACCGTACACACACTCTAATAGAACGCCACCCGAAGCGCCAACTTYGAGCTCATGTATCTCATTTCCTGTGAGAGATATCAAAAACAAGTCAACTAATAAAATGTTGCTGATATCATGATAAGCATTTTATCAGTTGACAACTTTTTGATATCTTTCAAAAGAAGTGAGATATTCAGGCTCAAAGTGAACGGTCTCCGGGTGCCGTTCCATTAGAGTCTTTACGGTTTTTTTTTGAATTTCTATATTTTCAAATCCGTTGATTTTTTTTTAATTTTAAATAAAACACCTTTTCTTTTTTTAGTATTTGTTGTCACTTTTCCAAAGGTCTAAACACCCTTTTATAATACCGTTTTCTTTTTTTGCTTCTCTGCGTCTCTAATTTTTCTATACTCTCTCAATTTCAGTTTCTGGGAGAGCTCTCAAAAAATGTCTTTTCGTGATCATGCCAATCGTCAAAATCACCGAGAACCAGAGGAATATGGGAGGTTGGTTTTTTTTTTTAATTTGAAAATTTTGAATATAGAAAATTGAACAAATTTGAGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCAAAGATCTCTGTGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTGGAAAAGTGACAACAAATACT</pcr_primer_p2>
		<pcr_amplicon_size>390</pcr_amplicon_size>
		<canonical_amplicon>CCCAAAGATCTCTGTGAAACCCCAAAAAATTATTGTTCTATACATATTTTTTCTTCGTTTTTCTGTGTACCGTACACACACTCTAATAGAACGCCACCCGAAGCGCCAACTTTGAGCTCATGTATCTCATTTCCTGTGAGAGATATCAAAAACAAGTCAACTAATAAAATGTTGCTGATATCATGATAAGCATTTTATCAGTTGACAACTTTTTGATATCTTTCAAAAGAAGTGAGATATTCAGGCTCAAAGTGAACGGTCTCCGGGTGCCGTTCCATTAGAGTCTTTACGGTTTTTTTTTGAATTTCTATATTTTCAAATCCGTTGATTTTTTTTTAATTTTAAATAAAACACCTTTTCTTTTTTTAGTATTTGTTGTCACTTTTCCAA</canonical_amplicon>
		<polymorphic_amplicon>CCCAAAGATCTCTGTGAAACCCCAAAAAATTATTGTTCTATACATATTTTTTCTTCGTTTTTCTGTGTACCGTACACACACTCTAATAGAACGCCACCCGAAGCGCCAACTTYGAGCTCATGTATCTCATTTCCTGTGAGAGATATCAAAAACAAGTCAACTAATAAAATGTTGCTGATATCATGATAAGCATTTTATCAGTTGACAACTTTTTGATATCTTTCAAAAGAAGTGAGATATTCAGGCTCAAAGTGAACGGTCTCCGGGTGCCGTTCCATTAGAGTCTTTACGGTTTTTTTTTGAATTTCTATATTTTCAAATCCGTTGATTTTTTTTTAATTTTAAATAAAACACCTTTTCTTTTTTTAGTATTTGTTGTCACTTTTCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28694</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>83921</contig_pos>
        <strand></strand>
        <context>gctcaaagtg[A/G]acggtctccg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAACTTTTTGATATCTTTCAAAAGAAGTGAGATATTCAGGCTCAAAGTG</left_flank>
        <right_flank>ACGGTCTCCGGGTGCCGTTCCATTAGAGTCTTTACGGTTTTTTTTTGAAT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTCAAAAAATTACTGTTTCAAATTTAACACAAAATTAAATTCAAAATTTCGAATTTCTAATTCCAATATACGACAATGTTTTCTAAATTTCGATTGTCAGCTAGTCGAAATGTTTTTCGAAATTACAGTAATCCTCTTTTTCTTTCTACCGTAATCCTTATATTTTGTCCCCGTAAGTCTATTTTTTCTATATCTCTAGATCCACATGACAATACAAATTTTCAAATCTAGTTATTTTTTTCCCCCAAAGATCTCTGTGAAACCCCAAAAAATTATTGTTCTATACATATTTTTTCTTCGTTTTTCTGTGTACCGTACACACACTCTAATAGAACGCCACCCGAAGCGCCAACTTTGAGCTCATGTATCTCATTTCCTGTGAGAGATATCAAAAACAAGTCAACTAATAAAATGTTGCTGATATCATGATAAGCATTTTATCAGTTGACAACTTTTTGATATCTTTCAAAAGAAGTGAGATATTCAGGCTCAAAGTGAACGGTCTCCGGGTGCCGTTCCATTAGAGTCTTTACGGTTTTTTTTTGAATTTCTATATTTTCAAATCCGTTGATTTTTTTTTAATTTTAAATAAAACACCTTTTCTTTTTTTAGTATTTGTTGTCACTTTTCCAAAGGTCTAAACACCCTTTTATAATACCGTTTTCTTTTTTTGCTTCTCTGCGTCTCTAATTTTTCTATACTCTCTCAATTTCAGTTTCTGGGAGAGCTCTCAAAAAATGTCTTTTCGTGATCATGCCAATCGTCAAAATCACCGAGAACCAGAGGAATATGGGAGGTTGGTTTTTTTTTTTAATTTGAAAATTTTGAATATAGAAAATTGAACAAATTTGAGACAAAAATCAAAAAACCAAATTTTGAAACAGTAATTTTTTTTGGGAACTTTGAAAAATAAGAAAAATAAAATAGAAAAACTCGATTTCTCAAAATTGCTGCCTAAAAAGACCGTAAAAAACCAATTGTTCCAAATTTGATGTCAA</canonical>
            <polymorphic>GTTTCAAAAAATTACTGTTTCAAATTTAACACAAAATTAAATTCAAAATTTCGAATTTCTAATTCCAATATACGACAATGTTTTCTAAATTTCGATTGTCAGCTAGTCGAAATGTTTTTCGAAATTACAGTAATCCTCTTTTTCTTTCTACCGTAATCCTTATATTTTGTCCCCGTAAGTCTATTTTTTCTATATCTCTAGATCCACATGACAATACAAATTTTCAAATCTAGTTATTTTTTTCCCCCAAAGATCTCTGTGAAACCCCAAAAAATTATTGTTCTATACATATTTTTTCTTCGTTTTTCTGTGTACCGTACACACACTCTAATAGAACGCCACCCGAAGCGCCAACTTTGAGCTCATGTATCTCATTTCCTGTGAGAGATATCAAAAACAAGTCAACTAATAAAATGTTGCTGATATCATGATAAGCATTTTATCAGTTGACAACTTTTTGATATCTTTCAAAAGAAGTGAGATATTCAGGCTCAAAGTGRACGGTCTCCGGGTGCCGTTCCATTAGAGTCTTTACGGTTTTTTTTTGAATTTCTATATTTTCAAATCCGTTGATTTTTTTTTAATTTTAAATAAAACACCTTTTCTTTTTTTAGTATTTGTTGTCACTTTTCCAAAGGTCTAAACACCCTTTTATAATACCGTTTTCTTTTTTTGCTTCTCTGCGTCTCTAATTTTTCTATACTCTCTCAATTTCAGTTTCTGGGAGAGCTCTCAAAAAATGTCTTTTCGTGATCATGCCAATCGTCAAAATCACCGAGAACCAGAGGAATATGGGAGGTTGGTTTTTTTTTTTAATTTGAAAATTTTGAATATAGAAAATTGAACAAATTTGAGACAAAAATCAAAAAACCAAATTTTGAAACAGTAATTTTTTTTGGGAACTTTGAAAAATAAGAAAAATAAAATAGAAAAACTCGATTTCTCAAAATTGCTGCCTAAAAAGACCGTAAAAAACCAATTGTTCCAAATTTGATGTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCAAAGATCTCTGTGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTGGAAAAGTGACAACAAATACT</pcr_primer_p2>
		<pcr_amplicon_size>390</pcr_amplicon_size>
		<canonical_amplicon>CCCAAAGATCTCTGTGAAACCCCAAAAAATTATTGTTCTATACATATTTTTTCTTCGTTTTTCTGTGTACCGTACACACACTCTAATAGAACGCCACCCGAAGCGCCAACTTTGAGCTCATGTATCTCATTTCCTGTGAGAGATATCAAAAACAAGTCAACTAATAAAATGTTGCTGATATCATGATAAGCATTTTATCAGTTGACAACTTTTTGATATCTTTCAAAAGAAGTGAGATATTCAGGCTCAAAGTGAACGGTCTCCGGGTGCCGTTCCATTAGAGTCTTTACGGTTTTTTTTTGAATTTCTATATTTTCAAATCCGTTGATTTTTTTTTAATTTTAAATAAAACACCTTTTCTTTTTTTAGTATTTGTTGTCACTTTTCCAA</canonical_amplicon>
		<polymorphic_amplicon>CCCAAAGATCTCTGTGAAACCCCAAAAAATTATTGTTCTATACATATTTTTTCTTCGTTTTTCTGTGTACCGTACACACACTCTAATAGAACGCCACCCGAAGCGCCAACTTTGAGCTCATGTATCTCATTTCCTGTGAGAGATATCAAAAACAAGTCAACTAATAAAATGTTGCTGATATCATGATAAGCATTTTATCAGTTGACAACTTTTTGATATCTTTCAAAAGAAGTGAGATATTCAGGCTCAAAGTGRACGGTCTCCGGGTGCCGTTCCATTAGAGTCTTTACGGTTTTTTTTTGAATTTCTATATTTTCAAATCCGTTGATTTTTTTTTAATTTTAAATAAAACACCTTTTCTTTTTTTAGTATTTGTTGTCACTTTTCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28695</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>85535</contig_pos>
        <strand></strand>
        <context>aatgatagat[T/C]tcgaCAGGGC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CGCGGAGCCAAAACGAGATATTCAGACGGTTTTGATACCAAATGATAGAT</left_flank>
        <right_flank>TCGACAGGGCCCATCACGCTTATAACATTTGAGCCGGATTCCGGGTCGAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGGCCCGCCCGCTTGCCACTACGATTTAAGTGAGAGACGCAAAGAAACGAGAGCGCTCTCGCTGTCTGCGGGGGATCCTCTAGAGTCGACCTGCAGGNNNNNNNNNNTTGACTTGCCACGTGGCTTTTTAGCTGGCGGTGGAGCTGCCGGAGGTGGTACTGGCGGTTGCACGGGAGGCGCCATCTGATGCATGTGCTGTTGTTGTTGCATCATCATCATCTGATGCTGGTGCTGCTCATAGGGGTTCATCGGTTGCCCGGGATACCGTTGTTGTTGTGGCATGGAGCCGGGCGGTGGTTGCTGATGTTGTCCCGGCGGCGGTACCGGCGGACCGCCCATCATTGTGTAGTCTGTCATTTGGCTCATTTGTGGTACATAATCGTCGCCTGGATTACTTAATGACCGTTTTCAAAATGACCGGTTTCGAAGTGTCGCGGTTTCGAAGTGTCGCGGAGCCAAAACGAGATATTCAGACGGTTTTGATACCAAATGATAGATTTCGACAGGGCCCATCACGCTTATAACATTTGAGCCGGATTCCGGGTCGATAACATGCCGAAAAATGCGTTTGAATTACAAAAAATCGTTTTTTTGTCAAGTTGATCGAAAATTGTCATTCAAGTTCAGTTTCCGACATGTTATCGGAATGGAAACCGTCTCAATCAATATAGACGTGATGGGCCCTGTTGAGGTCTTTCATTTGGTACCAAAACCGTCTGAATATTTCGTTTTAGAGACAAGTTATCGGCCTTGCCGCCATCTGGCCGGCCCCGTCAGCTTGCAACTACAATTTAAGTAGTATGTTCGGAGCTTGTAAACTAGAAATCTGCCTCTAAAAATCTACAAAATCTAAGCTCTCTACGATAATCTTAAGCCGAGTTATGGATACAGGGTGGCTGAAAAGTATTGAGACACTTGTTTTTTGTTGTATTTTCAAAAATGGAGTTTCAACAAAAGAACCAGATTTATTTTTTCAACAAATGATAGTAATAGAAAAGA</canonical>
            <polymorphic>CGGGCCCGCCCGCTTGCCACTACGATTTAAGTGAGAGACGCAAAGAAACGAGAGCGCTCTCGCTGTCTGCGGGGGATCCTCTAGAGTCGACCTGCAGGNNNNNNNNNNTTGACTTGCCACGTGGCTTTTTAGCTGGCGGTGGAGCTGCCGGAGGTGGTACTGGCGGTTGCACGGGAGGCGCCATCTGATGCATGTGCTGTTGTTGTTGCATCATCATCATCTGATGCTGGTGCTGCTCATAGGGGTTCATCGGTTGCCCGGGATACCGTTGTTGTTGTGGCATGGAGCCGGGCGGTGGTTGCTGATGTTGTCCCGGCGGCGGTACCGGCGGACCGCCCATCATTGTGTAGTCTGTCATTTGGCTCATTTGTGGTACATAATCGTCGCCTGGATTACTTAATGACCGTTTTCAAAATGACCGGTTTCGAAGTGTCGCGGTTTCGAAGTGTCGCGGAGCCAAAACGAGATATTCAGACGGTTTTGATACCAAATGATAGATYTCGACAGGGCCCATCACGCTTATAACATTTGAGCCGGATTCCGGGTCGATAACATGCCGAAAAATGCGTTTGAATTACAAAAAATCGTTTTTTTGTCAAGTTGATCGAAAATTGTCATTCAAGTTCAGTTTCCGACATGTTATCGGAATGGAAACCGTCTCAATCAATATAGACGTGATGGGCCCTGTTGAGGTCTTTCATTTGGTACCAAAACCGTCTGAATATTTCGTTTTAGAGACAAGTTATCGGCCTTGCCGCCATCTGGCCGGCCCCGTCAGCTTGCAACTACAATTTAAGTAGTATGTTCGGAGCTTGTAAACTAGAAATCTGCCTCTAAAAATCTACAAAATCTAAGCTCTCTACGATAATCTTAAGCCGAGTTATGGATACAGGGTGGCTGAAAAGTATTGAGACACTTGTTTTTTGTTGTATTTTCAAAAATGGAGTTTCAACAAAAGAACCAGATTTATTTTTTCAACAAATGATAGTAATAGAAAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCATTGTGTAGTCTGTCATTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTAATTCAAACGCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CATCATTGTGTAGTCTGTCATTTGGCTCATTTGTGGTACATAATCGTCGCCTGGATTACTTAATGACCGTTTTCAAAATGACCGGTTTCGAAGTGTCGCGGTTTCGAAGTGTCGCGGAGCCAAAACGAGATATTCAGACGGTTTTGATACCAAATGATAGATTTCGACAGGGCCCATCACGCTTATAACATTTGAGCCGGATTCCGGGTCGATAACATGCCGAAAAATGCGTTTGAATTACAA</canonical_amplicon>
		<polymorphic_amplicon>CATCATTGTGTAGTCTGTCATTTGGCTCATTTGTGGTACATAATCGTCGCCTGGATTACTTAATGACCGTTTTCAAAATGACCGGTTTCGAAGTGTCGCGGTTTCGAAGTGTCGCGGAGCCAAAACGAGATATTCAGACGGTTTTGATACCAAATGATAGATYTCGACAGGGCCCATCACGCTTATAACATTTGAGCCGGATTCCGGGTCGATAACATGCCGAAAAATGCGTTTGAATTACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28696</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>87842</contig_pos>
        <strand></strand>
        <context>tgcgtctcta[G/T]ccmcsaaaac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAGCCAGTGGCAGGTTAGAGACGCCGTGTGCCTCGTTGTCTGCGTCTCTA</left_flank>
        <right_flank>CCCCGAAAACTTCAAATGACCATAACTCAGCTCAAAATTGTCCTAGGAAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAAAGATTGACAAAAATTTCAATTAAAAATACCCAGATAACACCATCAATCATTGAAAAATCACGAAATTCAAAATTTTTTTGAACAGATTTTGAACCATTGAAAAAAAAAATGATATCGATTACAGATCCAAAGGACGTTGCAATTGTTCCTATGAAAGGGAAATCGATGATTTGCGAAGGAATCGTCGAGAAAATGAGAGGGAAATCAGAGAACTTCATAAGGAGGTACAGTATTACCGTAGCATGAGCAAGGATCTTGATCGTCATTCAAGACTGAAGAAGCAGGAAATCATTGAACTCAAAGAAGAACTTCTGAAAATGACCAGGATGAATGCTGAGAAACATTCAACGCGCCCTGAACACAAGATGGTTAGTTATGATCATAGCTAAAATTGCTGAAATTTCCAACAAAATAAATTTTATATGTTGATTTTAAGCCGAGATACAGCCAGTGGCAGGTTAGAGACGCCGTGTGCCTCGTTGTCTGCGTCTCTAGCCCCGAAAACTTCAAATGACCATAACTCAGCTCAAAATTGTCCTAGGAAGATGGTTTTTTAAACGATAGAGAGGAAATGTCCTGTATTATATTTTCAAATTTATGTGCTTTTCGAAATAAAAATTTTCAGCACTCTTCGGCTCCAATCACTTCTGCTCCGCCTCAAAAAGAATCACCACCACCATACGAAAACGCTGAAAAGGAATGGAAGACTGAGAAACCAGAGACCACAGGTAAATTTTGTTTATAACATTCAAAATCTCCAAGAGTTGAAAATACAATTTTTCTGAAAATCTGTAATTCTTGAAAACATTTTTGTTGTGCTTAAAAAAAGTCTGAAAACCTGAAATTTTTCCTTCTCAACAATTAAAAAATTGAGTTTCTAGGGCAATTTTGAGCCGAGTTATCGTCATTTGAAGATTTTGGGCTAGAGACGCAGTGTGTCTCGCTTCTCTGCGTCTCTCACCCCAAAAAATTTCTATAGCCATAAATCGGCGGAA</canonical>
            <polymorphic>ATGAAAGATTGACAAAAATTTCAATTAAAAATACCCAGATAACACCATCAATCATTGAAAAATCACGAAATTCAAAATTTTTTTGAACAGATTTTGAACCATTGAAAAAAAAAATGATATCGATTACAGATCCAAAGGACGTTGCAATTGTTCCTATGAAAGGGAAATCGATGATTTGCGAAGGAATCGTCGAGAAAATGAGAGGGAAATCAGAGAACTTCATAAGGAGGTACAGTATTACCGTAGCATGAGCAAGGATCTTGATCGTCATTCAAGACTGAAGAAGCAGGAAATCATTGAACTCAAAGAAGAACTTCTGAAAATGACCAGGATGAATGCTGAGAAACATTCAACGCGCCCTGAACACAAGATGGTTAGTTATGATCATAGCTAAAATTGCTGAAATTTCCAACAAAATAAATTTTATATGTTGATTTTAAGCCGAGATACAGCCAGTGGCAGGTTAGAGACGCCGTGTGCCTCGTTGTCTGCGTCTCTAKCCCCGAAAACTTCAAATGACCATAACTCAGCTCAAAATTGTCCTAGGAAGATGGTTTTTTAAACGATAGAGAGGAAATGTCCTGTATTATATTTTCAAATTTATGTGCTTTTCGAAATAAAAATTTTCAGCACTCTTCGGCTCCAATCACTTCTGCTCCGCCTCAAAAAGAATCACCACCACCATACGAAAACGCTGAAAAGGAATGGAAGACTGAGAAACCAGAGACCACAGGTAAATTTTGTTTATAACATTCAAAATCTCCAAGAGTTGAAAATACAATTTTTCTGAAAATCTGTAATTCTTGAAAACATTTTTGTTGTGCTTAAAAAAAGTCTGAAAACCTGAAATTTTTCCTTCTCAACAATTAAAAAATTGAGTTTCTAGGGCAATTTTGAGCCGAGTTATCGTCATTTGAAGATTTTGGGCTAGAGACGCAGTGTGTCTCGCTTCTCTGCGTCTCTCACCCCAAAAAATTTCTATAGCCATAAATCGGCGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>497 340 72 46 45</canonical_bands>
                <polymorphic_bands>543 340 72 45</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>436 396 101 67</canonical_bands>
                <polymorphic_bands>537 396 67</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>390 258 110 57 51 48 30 29 16 11</canonical_bands>
                <polymorphic_bands>390 258 110 78 57 51 29 16 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAACACAAGATGGTTAGTTATG</pcr_primer_p1>
		<pcr_primer_p2>CGAAAAGCACATAAATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TGAACACAAGATGGTTAGTTATGATCATAGCTAAAATTGCTGAAATTTCCAACAAAATAAATTTTATATGTTGATTTTAAGCCGAGATACAGCCAGTGGCAGGTTAGAGACGCCGTGTGCCTCGTTGTCTGCGTCTCTAGCCCCGAAAACTTCAAATGACCATAACTCAGCTCAAAATTGTCCTAGGAAGATGGTTTTTTAAACGATAGAGAGGAAATGTCCTGTATTATATTTTCAAATTTATGTGCTTTTCG</canonical_amplicon>
		<polymorphic_amplicon>TGAACACAAGATGGTTAGTTATGATCATAGCTAAAATTGCTGAAATTTCCAACAAAATAAATTTTATATGTTGATTTTAAGCCGAGATACAGCCAGTGGCAGGTTAGAGACGCCGTGTGCCTCGTTGTCTGCGTCTCTAKCCCCGAAAACTTCAAATGACCATAACTCAGCTCAAAATTGTCCTAGGAAGATGGTTTTTTAAACGATAGAGAGGAAATGTCCTGTATTATATTTTCAAATTTATGTGCTTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28697</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>87845</contig_pos>
        <strand></strand>
        <context>gtctctakcc[C/A]csaaaacttc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CCAGTGGCAGGTTAGAGACGCCGTGTGCCTCGTTGTCTGCGTCTCTAGCC</left_flank>
        <right_flank>CGAAAACTTCAAATGACCATAACTCAGCTCAAAATTGTCCTAGGAAGATG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGATTGACAAAAATTTCAATTAAAAATACCCAGATAACACCATCAATCATTGAAAAATCACGAAATTCAAAATTTTTTTGAACAGATTTTGAACCATTGAAAAAAAAAATGATATCGATTACAGATCCAAAGGACGTTGCAATTGTTCCTATGAAAGGGAAATCGATGATTTGCGAAGGAATCGTCGAGAAAATGAGAGGGAAATCAGAGAACTTCATAAGGAGGTACAGTATTACCGTAGCATGAGCAAGGATCTTGATCGTCATTCAAGACTGAAGAAGCAGGAAATCATTGAACTCAAAGAAGAACTTCTGAAAATGACCAGGATGAATGCTGAGAAACATTCAACGCGCCCTGAACACAAGATGGTTAGTTATGATCATAGCTAAAATTGCTGAAATTTCCAACAAAATAAATTTTATATGTTGATTTTAAGCCGAGATACAGCCAGTGGCAGGTTAGAGACGCCGTGTGCCTCGTTGTCTGCGTCTCTAGCCCCGAAAACTTCAAATGACCATAACTCAGCTCAAAATTGTCCTAGGAAGATGGTTTTTTAAACGATAGAGAGGAAATGTCCTGTATTATATTTTCAAATTTATGTGCTTTTCGAAATAAAAATTTTCAGCACTCTTCGGCTCCAATCACTTCTGCTCCGCCTCAAAAAGAATCACCACCACCATACGAAAACGCTGAAAAGGAATGGAAGACTGAGAAACCAGAGACCACAGGTAAATTTTGTTTATAACATTCAAAATCTCCAAGAGTTGAAAATACAATTTTTCTGAAAATCTGTAATTCTTGAAAACATTTTTGTTGTGCTTAAAAAAAGTCTGAAAACCTGAAATTTTTCCTTCTCAACAATTAAAAAATTGAGTTTCTAGGGCAATTTTGAGCCGAGTTATCGTCATTTGAAGATTTTGGGCTAGAGACGCAGTGTGTCTCGCTTCTCTGCGTCTCTCACCCCAAAAAATTTCTATAGCCATAAATCGGCGGAAAAT</canonical>
            <polymorphic>AAAGATTGACAAAAATTTCAATTAAAAATACCCAGATAACACCATCAATCATTGAAAAATCACGAAATTCAAAATTTTTTTGAACAGATTTTGAACCATTGAAAAAAAAAATGATATCGATTACAGATCCAAAGGACGTTGCAATTGTTCCTATGAAAGGGAAATCGATGATTTGCGAAGGAATCGTCGAGAAAATGAGAGGGAAATCAGAGAACTTCATAAGGAGGTACAGTATTACCGTAGCATGAGCAAGGATCTTGATCGTCATTCAAGACTGAAGAAGCAGGAAATCATTGAACTCAAAGAAGAACTTCTGAAAATGACCAGGATGAATGCTGAGAAACATTCAACGCGCCCTGAACACAAGATGGTTAGTTATGATCATAGCTAAAATTGCTGAAATTTCCAACAAAATAAATTTTATATGTTGATTTTAAGCCGAGATACAGCCAGTGGCAGGTTAGAGACGCCGTGTGCCTCGTTGTCTGCGTCTCTAGCCMCGAAAACTTCAAATGACCATAACTCAGCTCAAAATTGTCCTAGGAAGATGGTTTTTTAAACGATAGAGAGGAAATGTCCTGTATTATATTTTCAAATTTATGTGCTTTTCGAAATAAAAATTTTCAGCACTCTTCGGCTCCAATCACTTCTGCTCCGCCTCAAAAAGAATCACCACCACCATACGAAAACGCTGAAAAGGAATGGAAGACTGAGAAACCAGAGACCACAGGTAAATTTTGTTTATAACATTCAAAATCTCCAAGAGTTGAAAATACAATTTTTCTGAAAATCTGTAATTCTTGAAAACATTTTTGTTGTGCTTAAAAAAAGTCTGAAAACCTGAAATTTTTCCTTCTCAACAATTAAAAAATTGAGTTTCTAGGGCAATTTTGAGCCGAGTTATCGTCATTTGAAGATTTTGGGCTAGAGACGCAGTGTGTCTCGCTTCTCTGCGTCTCTCACCCCAAAAAATTTCTATAGCCATAAATCGGCGGAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAACACAAGATGGTTAGTTATG</pcr_primer_p1>
		<pcr_primer_p2>CGAAAAGCACATAAATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TGAACACAAGATGGTTAGTTATGATCATAGCTAAAATTGCTGAAATTTCCAACAAAATAAATTTTATATGTTGATTTTAAGCCGAGATACAGCCAGTGGCAGGTTAGAGACGCCGTGTGCCTCGTTGTCTGCGTCTCTAGCCCCGAAAACTTCAAATGACCATAACTCAGCTCAAAATTGTCCTAGGAAGATGGTTTTTTAAACGATAGAGAGGAAATGTCCTGTATTATATTTTCAAATTTATGTGCTTTTCG</canonical_amplicon>
		<polymorphic_amplicon>TGAACACAAGATGGTTAGTTATGATCATAGCTAAAATTGCTGAAATTTCCAACAAAATAAATTTTATATGTTGATTTTAAGCCGAGATACAGCCAGTGGCAGGTTAGAGACGCCGTGTGCCTCGTTGTCTGCGTCTCTAGCCMCGAAAACTTCAAATGACCATAACTCAGCTCAAAATTGTCCTAGGAAGATGGTTTTTTAAACGATAGAGAGGAAATGTCCTGTATTATATTTTCAAATTTATGTGCTTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28698</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>87847</contig_pos>
        <strand></strand>
        <context>ctctakccmc[G/C]aaaacttcaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AGTGGCAGGTTAGAGACGCCGTGTGCCTCGTTGTCTGCGTCTCTAGCCCC</left_flank>
        <right_flank>AAAACTTCAAATGACCATAACTCAGCTCAAAATTGTCCTAGGAAGATGGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATTGACAAAAATTTCAATTAAAAATACCCAGATAACACCATCAATCATTGAAAAATCACGAAATTCAAAATTTTTTTGAACAGATTTTGAACCATTGAAAAAAAAAATGATATCGATTACAGATCCAAAGGACGTTGCAATTGTTCCTATGAAAGGGAAATCGATGATTTGCGAAGGAATCGTCGAGAAAATGAGAGGGAAATCAGAGAACTTCATAAGGAGGTACAGTATTACCGTAGCATGAGCAAGGATCTTGATCGTCATTCAAGACTGAAGAAGCAGGAAATCATTGAACTCAAAGAAGAACTTCTGAAAATGACCAGGATGAATGCTGAGAAACATTCAACGCGCCCTGAACACAAGATGGTTAGTTATGATCATAGCTAAAATTGCTGAAATTTCCAACAAAATAAATTTTATATGTTGATTTTAAGCCGAGATACAGCCAGTGGCAGGTTAGAGACGCCGTGTGCCTCGTTGTCTGCGTCTCTAGCCCCGAAAACTTCAAATGACCATAACTCAGCTCAAAATTGTCCTAGGAAGATGGTTTTTTAAACGATAGAGAGGAAATGTCCTGTATTATATTTTCAAATTTATGTGCTTTTCGAAATAAAAATTTTCAGCACTCTTCGGCTCCAATCACTTCTGCTCCGCCTCAAAAAGAATCACCACCACCATACGAAAACGCTGAAAAGGAATGGAAGACTGAGAAACCAGAGACCACAGGTAAATTTTGTTTATAACATTCAAAATCTCCAAGAGTTGAAAATACAATTTTTCTGAAAATCTGTAATTCTTGAAAACATTTTTGTTGTGCTTAAAAAAAGTCTGAAAACCTGAAATTTTTCCTTCTCAACAATTAAAAAATTGAGTTTCTAGGGCAATTTTGAGCCGAGTTATCGTCATTTGAAGATTTTGGGCTAGAGACGCAGTGTGTCTCGCTTCTCTGCGTCTCTCACCCCAAAAAATTTCTATAGCCATAAATCGGCGGAAAATCG</canonical>
            <polymorphic>AGATTGACAAAAATTTCAATTAAAAATACCCAGATAACACCATCAATCATTGAAAAATCACGAAATTCAAAATTTTTTTGAACAGATTTTGAACCATTGAAAAAAAAAATGATATCGATTACAGATCCAAAGGACGTTGCAATTGTTCCTATGAAAGGGAAATCGATGATTTGCGAAGGAATCGTCGAGAAAATGAGAGGGAAATCAGAGAACTTCATAAGGAGGTACAGTATTACCGTAGCATGAGCAAGGATCTTGATCGTCATTCAAGACTGAAGAAGCAGGAAATCATTGAACTCAAAGAAGAACTTCTGAAAATGACCAGGATGAATGCTGAGAAACATTCAACGCGCCCTGAACACAAGATGGTTAGTTATGATCATAGCTAAAATTGCTGAAATTTCCAACAAAATAAATTTTATATGTTGATTTTAAGCCGAGATACAGCCAGTGGCAGGTTAGAGACGCCGTGTGCCTCGTTGTCTGCGTCTCTAGCCCCSAAAACTTCAAATGACCATAACTCAGCTCAAAATTGTCCTAGGAAGATGGTTTTTTAAACGATAGAGAGGAAATGTCCTGTATTATATTTTCAAATTTATGTGCTTTTCGAAATAAAAATTTTCAGCACTCTTCGGCTCCAATCACTTCTGCTCCGCCTCAAAAAGAATCACCACCACCATACGAAAACGCTGAAAAGGAATGGAAGACTGAGAAACCAGAGACCACAGGTAAATTTTGTTTATAACATTCAAAATCTCCAAGAGTTGAAAATACAATTTTTCTGAAAATCTGTAATTCTTGAAAACATTTTTGTTGTGCTTAAAAAAAGTCTGAAAACCTGAAATTTTTCCTTCTCAACAATTAAAAAATTGAGTTTCTAGGGCAATTTTGAGCCGAGTTATCGTCATTTGAAGATTTTGGGCTAGAGACGCAGTGTGTCTCGCTTCTCTGCGTCTCTCACCCCAAAAAATTTCTATAGCCATAAATCGGCGGAAAATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAACACAAGATGGTTAGTTATG</pcr_primer_p1>
		<pcr_primer_p2>CGAAAAGCACATAAATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TGAACACAAGATGGTTAGTTATGATCATAGCTAAAATTGCTGAAATTTCCAACAAAATAAATTTTATATGTTGATTTTAAGCCGAGATACAGCCAGTGGCAGGTTAGAGACGCCGTGTGCCTCGTTGTCTGCGTCTCTAGCCCCGAAAACTTCAAATGACCATAACTCAGCTCAAAATTGTCCTAGGAAGATGGTTTTTTAAACGATAGAGAGGAAATGTCCTGTATTATATTTTCAAATTTATGTGCTTTTCG</canonical_amplicon>
		<polymorphic_amplicon>TGAACACAAGATGGTTAGTTATGATCATAGCTAAAATTGCTGAAATTTCCAACAAAATAAATTTTATATGTTGATTTTAAGCCGAGATACAGCCAGTGGCAGGTTAGAGACGCCGTGTGCCTCGTTGTCTGCGTCTCTAGCCCCSAAAACTTCAAATGACCATAACTCAGCTCAAAATTGTCCTAGGAAGATGGTTTTTTAAACGATAGAGAGGAAATGTCCTGTATTATATTTTCAAATTTATGTGCTTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28699</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>87885</contig_pos>
        <strand>+</strand>
        <context>caaaattgtc[A/G]taggaagatg</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCTCTAGCCCCGAAAACTTCAAATGACCATAACTCAGCTCAAAATTGTC</left_flank>
        <right_flank>TAGGAAGATGGTTTTTTAAACGATAGAGAGGAAATGTCCTGTATTATATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCATCAATCATTGAAAAATCACGAAATTCAAAATTTTTTTGAACAGATTTTGAACCATTGAAAAAAAAAATGATATCGATTACAGATCCAAAGGACGTTGCAATTGTTCCTATGAAAGGGAAATCGATGATTTGCGAAGGAATCGTCGAGAAAATGAGAGGGAAATCAGAGAACTTCATAAGGAGGTACAGTATTACCGTAGCATGAGCAAGGATCTTGATCGTCATTCAAGACTGAAGAAGCAGGAAATCATTGAACTCAAAGAAGAACTTCTGAAAATGACCAGGATGAATGCTGAGAAACATTCAACGCGCCCTGAACACAAGATGGTTAGTTATGATCATAGCTAAAATTGCTGAAATTTCCAACAAAATAAATTTTATATGTTGATTTTAAGCCGAGATACAGCCAGTGGCAGGTTAGAGACGCCGTGTGCCTCGTTGTCTGCGTCTCTAGCCCCGAAAACTTCAAATGACCATAACTCAGCTCAAAATTGTCCTAGGAAGATGGTTTTTTAAACGATAGAGAGGAAATGTCCTGTATTATATTTTCAAATTTATGTGCTTTTCGAAATAAAAATTTTCAGCACTCTTCGGCTCCAATCACTTCTGCTCCGCCTCAAAAAGAATCACCACCACCATACGAAAACGCTGAAAAGGAATGGAAGACTGAGAAACCAGAGACCACAGGTAAATTTTGTTTATAACATTCAAAATCTCCAAGAGTTGAAAATACAATTTTTCTGAAAATCTGTAATTCTTGAAAACATTTTTGTTGTGCTTAAAAAAAGTCTGAAAACCTGAAATTTTTCCTTCTCAACAATTAAAAAATTGAGTTTCTAGGGCAATTTTGAGCCGAGTTATCGTCATTTGAAGATTTTGGGCTAGAGACGCAGTGTGTCTCGCTTCTCTGCGTCTCTCACCCCAAAAAATTTCTATAGCCATAAATCGGCGGAAAATCGTTCTAGAAAGCTGGTTTTTGGAGTGTTTCGTTGGAAAT</canonical>
            <polymorphic>ACCATCAATCATTGAAAAATCACGAAATTCAAAATTTTTTTGAACAGATTTTGAACCATTGAAAAAAAAAATGATATCGATTACAGATCCAAAGGACGTTGCAATTGTTCCTATGAAAGGGAAATCGATGATTTGCGAAGGAATCGTCGAGAAAATGAGAGGGAAATCAGAGAACTTCATAAGGAGGTACAGTATTACCGTAGCATGAGCAAGGATCTTGATCGTCATTCAAGACTGAAGAAGCAGGAAATCATTGAACTCAAAGAAGAACTTCTGAAAATGACCAGGATGAATGCTGAGAAACATTCAACGCGCCCTGAACACAAGATGGTTAGTTATGATCATAGCTAAAATTGCTGAAATTTCCAACAAAATAAATTTTATATGTTGATTTTAAGCCGAGATACAGCCAGTGGCAGGTTAGAGACGCCGTGTGCCTCGTTGTCTGCGTCTCTAGCCCCGAAAACTTCAAATGACCATAACTCAGCTCAAAATTGTCRTAGGAAGATGGTTTTTTAAACGATAGAGAGGAAATGTCCTGTATTATATTTTCAAATTTATGTGCTTTTCGAAATAAAAATTTTCAGCACTCTTCGGCTCCAATCACTTCTGCTCCGCCTCAAAAAGAATCACCACCACCATACGAAAACGCTGAAAAGGAATGGAAGACTGAGAAACCAGAGACCACAGGTAAATTTTGTTTATAACATTCAAAATCTCCAAGAGTTGAAAATACAATTTTTCTGAAAATCTGTAATTCTTGAAAACATTTTTGTTGTGCTTAAAAAAAGTCTGAAAACCTGAAATTTTTCCTTCTCAACAATTAAAAAATTGAGTTTCTAGGGCAATTTTGAGCCGAGTTATCGTCATTTGAAGATTTTGGGCTAGAGACGCAGTGTGTCTCGCTTCTCTGCGTCTCTCACCCCAAAAAATTTCTATAGCCATAAATCGGCGGAAAATCGTTCTAGAAAGCTGGTTTTTGGAGTGTTTCGTTGGAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCTAGG</site>
                <isoschizomers>
                    <enzyme>AvrII</enzyme>
                    <enzyme>BlnI</enzyme>
                    <enzyme>BspA2I</enzyme>
                    <enzyme>XmaJI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>454 340 80 46 45 35</canonical_bands>
                <polymorphic_bands>454 386 80 45 35</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAACACAAGATGGTTAGTTATG</pcr_primer_p1>
		<pcr_primer_p2>CGAAAAGCACATAAATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TGAACACAAGATGGTTAGTTATGATCATAGCTAAAATTGCTGAAATTTCCAACAAAATAAATTTTATATGTTGATTTTAAGCCGAGATACAGCCAGTGGCAGGTTAGAGACGCCGTGTGCCTCGTTGTCTGCGTCTCTAGCCCCGAAAACTTCAAATGACCATAACTCAGCTCAAAATTGTCCTAGGAAGATGGTTTTTTAAACGATAGAGAGGAAATGTCCTGTATTATATTTTCAAATTTATGTGCTTTTCG</canonical_amplicon>
		<polymorphic_amplicon>TGAACACAAGATGGTTAGTTATGATCATAGCTAAAATTGCTGAAATTTCCAACAAAATAAATTTTATATGTTGATTTTAAGCCGAGATACAGCCAGTGGCAGGTTAGAGACGCCGTGTGCCTCGTTGTCTGCGTCTCTAGCCCCGAAAACTTCAAATGACCATAACTCAGCTCAAAATTGTCRTAGGAAGATGGTTTTTTAAACGATAGAGAGGAAATGTCCTGTATTATATTTTCAAATTTATGTGCTTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28700</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>87931</contig_pos>
        <strand></strand>
        <context>GTCCTGTATT[A/G]TATTTTCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTCCTAGGAAGATGGTTTTTTAAACGATAGAGAGGAAATGTCCTGTATT</left_flank>
        <right_flank>TATTTTCAAATTTATGTGCTTTTCGAAATAAAAATTTTCAGCACTCTTCG</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTTGAACCATTGAAAAAAAAAATGATATCGATTACAGATCCAAAGGACGTTGCAATTGTTCCTATGAAAGGGAAATCGATGATTTGCGAAGGAATCGTCGAGAAAATGAGAGGGAAATCAGAGAACTTCATAAGGAGGTACAGTATTACCGTAGCATGAGCAAGGATCTTGATCGTCATTCAAGACTGAAGAAGCAGGAAATCATTGAACTCAAAGAAGAACTTCTGAAAATGACCAGGATGAATGCTGAGAAACATTCAACGCGCCCTGAACACAAGATGGTTAGTTATGATCATAGCTAAAATTGCTGAAATTTCCAACAAAATAAATTTTATATGTTGATTTTAAGCCGAGATACAGCCAGTGGCAGGTTAGAGACGCCGTGTGCCTCGTTGTCTGCGTCTCTAGCCCCGAAAACTTCAAATGACCATAACTCAGCTCAAAATTGTCCTAGGAAGATGGTTTTTTAAACGATAGAGAGGAAATGTCCTGTATTATATTTTCAAATTTATGTGCTTTTCGAAATAAAAATTTTCAGCACTCTTCGGCTCCAATCACTTCTGCTCCGCCTCAAAAAGAATCACCACCACCATACGAAAACGCTGAAAAGGAATGGAAGACTGAGAAACCAGAGACCACAGGTAAATTTTGTTTATAACATTCAAAATCTCCAAGAGTTGAAAATACAATTTTTCTGAAAATCTGTAATTCTTGAAAACATTTTTGTTGTGCTTAAAAAAAGTCTGAAAACCTGAAATTTTTCCTTCTCAACAATTAAAAAATTGAGTTTCTAGGGCAATTTTGAGCCGAGTTATCGTCATTTGAAGATTTTGGGCTAGAGACGCAGTGTGTCTCGCTTCTCTGCGTCTCTCACCCCAAAAAATTTCTATAGCCATAAATCGGCGGAAAATCGTTCTAGAAAGCTGGTTTTTGGAGTGTTTCGTTGGAAATTGCTCAGATGTTTAAGAAACTATAAAATTTCAAAATCAGGAACCCT</canonical>
            <polymorphic>GATTTTGAACCATTGAAAAAAAAAATGATATCGATTACAGATCCAAAGGACGTTGCAATTGTTCCTATGAAAGGGAAATCGATGATTTGCGAAGGAATCGTCGAGAAAATGAGAGGGAAATCAGAGAACTTCATAAGGAGGTACAGTATTACCGTAGCATGAGCAAGGATCTTGATCGTCATTCAAGACTGAAGAAGCAGGAAATCATTGAACTCAAAGAAGAACTTCTGAAAATGACCAGGATGAATGCTGAGAAACATTCAACGCGCCCTGAACACAAGATGGTTAGTTATGATCATAGCTAAAATTGCTGAAATTTCCAACAAAATAAATTTTATATGTTGATTTTAAGCCGAGATACAGCCAGTGGCAGGTTAGAGACGCCGTGTGCCTCGTTGTCTGCGTCTCTAGCCCCGAAAACTTCAAATGACCATAACTCAGCTCAAAATTGTCCTAGGAAGATGGTTTTTTAAACGATAGAGAGGAAATGTCCTGTATTRTATTTTCAAATTTATGTGCTTTTCGAAATAAAAATTTTCAGCACTCTTCGGCTCCAATCACTTCTGCTCCGCCTCAAAAAGAATCACCACCACCATACGAAAACGCTGAAAAGGAATGGAAGACTGAGAAACCAGAGACCACAGGTAAATTTTGTTTATAACATTCAAAATCTCCAAGAGTTGAAAATACAATTTTTCTGAAAATCTGTAATTCTTGAAAACATTTTTGTTGTGCTTAAAAAAAGTCTGAAAACCTGAAATTTTTCCTTCTCAACAATTAAAAAATTGAGTTTCTAGGGCAATTTTGAGCCGAGTTATCGTCATTTGAAGATTTTGGGCTAGAGACGCAGTGTGTCTCGCTTCTCTGCGTCTCTCACCCCAAAAAATTTCTATAGCCATAAATCGGCGGAAAATCGTTCTAGAAAGCTGGTTTTTGGAGTGTTTCGTTGGAAATTGCTCAGATGTTTAAGAAACTATAAAATTTCAAAATCAGGAACCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAACACAAGATGGTTAGTTATG</pcr_primer_p1>
		<pcr_primer_p2>GTATGGTGGTGGTGATTCTT</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>TGAACACAAGATGGTTAGTTATGATCATAGCTAAAATTGCTGAAATTTCCAACAAAATAAATTTTATATGTTGATTTTAAGCCGAGATACAGCCAGTGGCAGGTTAGAGACGCCGTGTGCCTCGTTGTCTGCGTCTCTAGCCCCGAAAACTTCAAATGACCATAACTCAGCTCAAAATTGTCCTAGGAAGATGGTTTTTTAAACGATAGAGAGGAAATGTCCTGTATTATATTTTCAAATTTATGTGCTTTTCGAAATAAAAATTTTCAGCACTCTTCGGCTCCAATCACTTCTGCTCCGCCTCAAAAAGAATCACCACCACCATAC</canonical_amplicon>
		<polymorphic_amplicon>TGAACACAAGATGGTTAGTTATGATCATAGCTAAAATTGCTGAAATTTCCAACAAAATAAATTTTATATGTTGATTTTAAGCCGAGATACAGCCAGTGGCAGGTTAGAGACGCCGTGTGCCTCGTTGTCTGCGTCTCTAGCCCCGAAAACTTCAAATGACCATAACTCAGCTCAAAATTGTCCTAGGAAGATGGTTTTTTAAACGATAGAGAGGAAATGTCCTGTATTRTATTTTCAAATTTATGTGCTTTTCGAAATAAAAATTTTCAGCACTCTTCGGCTCCAATCACTTCTGCTCCGCCTCAAAAAGAATCACCACCACCATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28701</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>88009</contig_pos>
        <strand>+</strand>
        <context>TCCGCCTCAA[A/G]AAGAATCACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAAAAATTTTCAGCACTCTTCGGCTCCAATCACTTCTGCTCCGCCTCAA</left_flank>
        <right_flank>AAGAATCACCACCACCATACGAAAACGCTGAAAAGGAATGGAAGACTGAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGATGATTTGCGAAGGAATCGTCGAGAAAATGAGAGGGAAATCAGAGAACTTCATAAGGAGGTACAGTATTACCGTAGCATGAGCAAGGATCTTGATCGTCATTCAAGACTGAAGAAGCAGGAAATCATTGAACTCAAAGAAGAACTTCTGAAAATGACCAGGATGAATGCTGAGAAACATTCAACGCGCCCTGAACACAAGATGGTTAGTTATGATCATAGCTAAAATTGCTGAAATTTCCAACAAAATAAATTTTATATGTTGATTTTAAGCCGAGATACAGCCAGTGGCAGGTTAGAGACGCCGTGTGCCTCGTTGTCTGCGTCTCTAGCCCCGAAAACTTCAAATGACCATAACTCAGCTCAAAATTGTCCTAGGAAGATGGTTTTTTAAACGATAGAGAGGAAATGTCCTGTATTATATTTTCAAATTTATGTGCTTTTCGAAATAAAAATTTTCAGCACTCTTCGGCTCCAATCACTTCTGCTCCGCCTCAAAAAGAATCACCACCACCATACGAAAACGCTGAAAAGGAATGGAAGACTGAGAAACCAGAGACCACAGGTAAATTTTGTTTATAACATTCAAAATCTCCAAGAGTTGAAAATACAATTTTTCTGAAAATCTGTAATTCTTGAAAACATTTTTGTTGTGCTTAAAAAAAGTCTGAAAACCTGAAATTTTTCCTTCTCAACAATTAAAAAATTGAGTTTCTAGGGCAATTTTGAGCCGAGTTATCGTCATTTGAAGATTTTGGGCTAGAGACGCAGTGTGTCTCGCTTCTCTGCGTCTCTCACCCCAAAAAATTTCTATAGCCATAAATCGGCGGAAAATCGTTCTAGAAAGCTGGTTTTTGGAGTGTTTCGTTGGAAATTGCTCAGATGTTTAAGAAACTATAAAATTTCAAAATCAGGAACCCTGATTTTTTTTTCGAAATTTTCAGATTTTCAAAATAAAAATTTCAATTTTAAAACTTCAATTTTAAACTCTTGAATCAA</canonical>
            <polymorphic>TCGATGATTTGCGAAGGAATCGTCGAGAAAATGAGAGGGAAATCAGAGAACTTCATAAGGAGGTACAGTATTACCGTAGCATGAGCAAGGATCTTGATCGTCATTCAAGACTGAAGAAGCAGGAAATCATTGAACTCAAAGAAGAACTTCTGAAAATGACCAGGATGAATGCTGAGAAACATTCAACGCGCCCTGAACACAAGATGGTTAGTTATGATCATAGCTAAAATTGCTGAAATTTCCAACAAAATAAATTTTATATGTTGATTTTAAGCCGAGATACAGCCAGTGGCAGGTTAGAGACGCCGTGTGCCTCGTTGTCTGCGTCTCTAGCCCCGAAAACTTCAAATGACCATAACTCAGCTCAAAATTGTCCTAGGAAGATGGTTTTTTAAACGATAGAGAGGAAATGTCCTGTATTATATTTTCAAATTTATGTGCTTTTCGAAATAAAAATTTTCAGCACTCTTCGGCTCCAATCACTTCTGCTCCGCCTCAARAAGAATCACCACCACCATACGAAAACGCTGAAAAGGAATGGAAGACTGAGAAACCAGAGACCACAGGTAAATTTTGTTTATAACATTCAAAATCTCCAAGAGTTGAAAATACAATTTTTCTGAAAATCTGTAATTCTTGAAAACATTTTTGTTGTGCTTAAAAAAAGTCTGAAAACCTGAAATTTTTCCTTCTCAACAATTAAAAAATTGAGTTTCTAGGGCAATTTTGAGCCGAGTTATCGTCATTTGAAGATTTTGGGCTAGAGACGCAGTGTGTCTCGCTTCTCTGCGTCTCTCACCCCAAAAAATTTCTATAGCCATAAATCGGCGGAAAATCGTTCTAGAAAGCTGGTTTTTGGAGTGTTTCGTTGGAAATTGCTCAGATGTTTAAGAAACTATAAAATTTCAAAATCAGGAACCCTGATTTTTTTTTCGAAATTTTCAGATTTTCAAAATAAAAATTTCAATTTTAAAACTTCAATTTTAAACTCTTGAATCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCAAATTTATGTGCTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTAAGCACAACAAAAATGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCAAATTTATGTGCTTTTCGAAATAAAAATTTTCAGCACTCTTCGGCTCCAATCACTTCTGCTCCGCCTCAAAAAGAATCACCACCACCATACGAAAACGCTGAAAAGGAATGGAAGACTGAGAAACCAGAGACCACAGGTAAATTTTGTTTATAACATTCAAAATCTCCAAGAGTTGAAAATACAATTTTTCTGAAAATCTGTAATTCTTGAAAACATTTTTGTTGTGCTTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCAAATTTATGTGCTTTTCGAAATAAAAATTTTCAGCACTCTTCGGCTCCAATCACTTCTGCTCCGCCTCAARAAGAATCACCACCACCATACGAAAACGCTGAAAAGGAATGGAAGACTGAGAAACCAGAGACCACAGGTAAATTTTGTTTATAACATTCAAAATCTCCAAGAGTTGAAAATACAATTTTTCTGAAAATCTGTAATTCTTGAAAACATTTTTGTTGTGCTTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28702</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>88030</contig_pos>
        <strand>+</strand>
        <context>ACCACCATAC[A/G]AAAACGCTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGCTCCAATCACTTCTGCTCCGCCTCAAAAAGAATCACCACCACCATAC</left_flank>
        <right_flank>AAAACGCTGAAAAGGAATGGAAGACTGAGAAACCAGAGACCACAGGTAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCGAGAAAATGAGAGGGAAATCAGAGAACTTCATAAGGAGGTACAGTATTACCGTAGCATGAGCAAGGATCTTGATCGTCATTCAAGACTGAAGAAGCAGGAAATCATTGAACTCAAAGAAGAACTTCTGAAAATGACCAGGATGAATGCTGAGAAACATTCAACGCGCCCTGAACACAAGATGGTTAGTTATGATCATAGCTAAAATTGCTGAAATTTCCAACAAAATAAATTTTATATGTTGATTTTAAGCCGAGATACAGCCAGTGGCAGGTTAGAGACGCCGTGTGCCTCGTTGTCTGCGTCTCTAGCCCCGAAAACTTCAAATGACCATAACTCAGCTCAAAATTGTCCTAGGAAGATGGTTTTTTAAACGATAGAGAGGAAATGTCCTGTATTATATTTTCAAATTTATGTGCTTTTCGAAATAAAAATTTTCAGCACTCTTCGGCTCCAATCACTTCTGCTCCGCCTCAAAAAGAATCACCACCACCATACGAAAACGCTGAAAAGGAATGGAAGACTGAGAAACCAGAGACCACAGGTAAATTTTGTTTATAACATTCAAAATCTCCAAGAGTTGAAAATACAATTTTTCTGAAAATCTGTAATTCTTGAAAACATTTTTGTTGTGCTTAAAAAAAGTCTGAAAACCTGAAATTTTTCCTTCTCAACAATTAAAAAATTGAGTTTCTAGGGCAATTTTGAGCCGAGTTATCGTCATTTGAAGATTTTGGGCTAGAGACGCAGTGTGTCTCGCTTCTCTGCGTCTCTCACCCCAAAAAATTTCTATAGCCATAAATCGGCGGAAAATCGTTCTAGAAAGCTGGTTTTTGGAGTGTTTCGTTGGAAATTGCTCAGATGTTTAAGAAACTATAAAATTTCAAAATCAGGAACCCTGATTTTTTTTTCGAAATTTTCAGATTTTCAAAATAAAAATTTCAATTTTAAAACTTCAATTTTAAACTCTTGAATCAACTAGAAAATTCCTTTTTAATC</canonical>
            <polymorphic>GTCGAGAAAATGAGAGGGAAATCAGAGAACTTCATAAGGAGGTACAGTATTACCGTAGCATGAGCAAGGATCTTGATCGTCATTCAAGACTGAAGAAGCAGGAAATCATTGAACTCAAAGAAGAACTTCTGAAAATGACCAGGATGAATGCTGAGAAACATTCAACGCGCCCTGAACACAAGATGGTTAGTTATGATCATAGCTAAAATTGCTGAAATTTCCAACAAAATAAATTTTATATGTTGATTTTAAGCCGAGATACAGCCAGTGGCAGGTTAGAGACGCCGTGTGCCTCGTTGTCTGCGTCTCTAGCCCCGAAAACTTCAAATGACCATAACTCAGCTCAAAATTGTCCTAGGAAGATGGTTTTTTAAACGATAGAGAGGAAATGTCCTGTATTATATTTTCAAATTTATGTGCTTTTCGAAATAAAAATTTTCAGCACTCTTCGGCTCCAATCACTTCTGCTCCGCCTCAAAAAGAATCACCACCACCATACRAAAACGCTGAAAAGGAATGGAAGACTGAGAAACCAGAGACCACAGGTAAATTTTGTTTATAACATTCAAAATCTCCAAGAGTTGAAAATACAATTTTTCTGAAAATCTGTAATTCTTGAAAACATTTTTGTTGTGCTTAAAAAAAGTCTGAAAACCTGAAATTTTTCCTTCTCAACAATTAAAAAATTGAGTTTCTAGGGCAATTTTGAGCCGAGTTATCGTCATTTGAAGATTTTGGGCTAGAGACGCAGTGTGTCTCGCTTCTCTGCGTCTCTCACCCCAAAAAATTTCTATAGCCATAAATCGGCGGAAAATCGTTCTAGAAAGCTGGTTTTTGGAGTGTTTCGTTGGAAATTGCTCAGATGTTTAAGAAACTATAAAATTTCAAAATCAGGAACCCTGATTTTTTTTTCGAAATTTTCAGATTTTCAAAATAAAAATTTCAATTTTAAAACTTCAATTTTAAACTCTTGAATCAACTAGAAAATTCCTTTTTAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCAAATTTATGTGCTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTAAGCACAACAAAAATGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCAAATTTATGTGCTTTTCGAAATAAAAATTTTCAGCACTCTTCGGCTCCAATCACTTCTGCTCCGCCTCAAAAAGAATCACCACCACCATACGAAAACGCTGAAAAGGAATGGAAGACTGAGAAACCAGAGACCACAGGTAAATTTTGTTTATAACATTCAAAATCTCCAAGAGTTGAAAATACAATTTTTCTGAAAATCTGTAATTCTTGAAAACATTTTTGTTGTGCTTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCAAATTTATGTGCTTTTCGAAATAAAAATTTTCAGCACTCTTCGGCTCCAATCACTTCTGCTCCGCCTCAAAAAGAATCACCACCACCATACRAAAACGCTGAAAAGGAATGGAAGACTGAGAAACCAGAGACCACAGGTAAATTTTGTTTATAACATTCAAAATCTCCAAGAGTTGAAAATACAATTTTTCTGAAAATCTGTAATTCTTGAAAACATTTTTGTTGTGCTTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28703</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>88120</contig_pos>
        <strand>+</strand>
        <context>AGTTGAAAAT[A/T]CAATTTTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCACAGGTAAATTTTGTTTATAACATTCAAAATCTCCAAGAGTTGAAAAT</left_flank>
        <right_flank>CAATTTTTCTGAAAATCTGTAATTCTTGAAAACATTTTTGTTGTGCTTAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAGAAGCAGGAAATCATTGAACTCAAAGAAGAACTTCTGAAAATGACCAGGATGAATGCTGAGAAACATTCAACGCGCCCTGAACACAAGATGGTTAGTTATGATCATAGCTAAAATTGCTGAAATTTCCAACAAAATAAATTTTATATGTTGATTTTAAGCCGAGATACAGCCAGTGGCAGGTTAGAGACGCCGTGTGCCTCGTTGTCTGCGTCTCTAGCCCCGAAAACTTCAAATGACCATAACTCAGCTCAAAATTGTCCTAGGAAGATGGTTTTTTAAACGATAGAGAGGAAATGTCCTGTATTATATTTTCAAATTTATGTGCTTTTCGAAATAAAAATTTTCAGCACTCTTCGGCTCCAATCACTTCTGCTCCGCCTCAAAAAGAATCACCACCACCATACGAAAACGCTGAAAAGGAATGGAAGACTGAGAAACCAGAGACCACAGGTAAATTTTGTTTATAACATTCAAAATCTCCAAGAGTTGAAAATACAATTTTTCTGAAAATCTGTAATTCTTGAAAACATTTTTGTTGTGCTTAAAAAAAGTCTGAAAACCTGAAATTTTTCCTTCTCAACAATTAAAAAATTGAGTTTCTAGGGCAATTTTGAGCCGAGTTATCGTCATTTGAAGATTTTGGGCTAGAGACGCAGTGTGTCTCGCTTCTCTGCGTCTCTCACCCCAAAAAATTTCTATAGCCATAAATCGGCGGAAAATCGTTCTAGAAAGCTGGTTTTTGGAGTGTTTCGTTGGAAATTGCTCAGATGTTTAAGAAACTATAAAATTTCAAAATCAGGAACCCTGATTTTTTTTTCGAAATTTTCAGATTTTCAAAATAAAAATTTCAATTTTAAAACTTCAATTTTAAACTCTTGAATCAACTAGAAAATTCCTTTTTAATCGCTTCGAAAATCAAAGTTCTACGACAATTTTGAGCTGAGTTATAGCCTTCATTGCTGCGANNNNNNNNNNGATTTTCAACTTGATAACAA</canonical>
            <polymorphic>TGAAGAAGCAGGAAATCATTGAACTCAAAGAAGAACTTCTGAAAATGACCAGGATGAATGCTGAGAAACATTCAACGCGCCCTGAACACAAGATGGTTAGTTATGATCATAGCTAAAATTGCTGAAATTTCCAACAAAATAAATTTTATATGTTGATTTTAAGCCGAGATACAGCCAGTGGCAGGTTAGAGACGCCGTGTGCCTCGTTGTCTGCGTCTCTAGCCCCGAAAACTTCAAATGACCATAACTCAGCTCAAAATTGTCCTAGGAAGATGGTTTTTTAAACGATAGAGAGGAAATGTCCTGTATTATATTTTCAAATTTATGTGCTTTTCGAAATAAAAATTTTCAGCACTCTTCGGCTCCAATCACTTCTGCTCCGCCTCAAAAAGAATCACCACCACCATACGAAAACGCTGAAAAGGAATGGAAGACTGAGAAACCAGAGACCACAGGTAAATTTTGTTTATAACATTCAAAATCTCCAAGAGTTGAAAATWCAATTTTTCTGAAAATCTGTAATTCTTGAAAACATTTTTGTTGTGCTTAAAAAAAGTCTGAAAACCTGAAATTTTTCCTTCTCAACAATTAAAAAATTGAGTTTCTAGGGCAATTTTGAGCCGAGTTATCGTCATTTGAAGATTTTGGGCTAGAGACGCAGTGTGTCTCGCTTCTCTGCGTCTCTCACCCCAAAAAATTTCTATAGCCATAAATCGGCGGAAAATCGTTCTAGAAAGCTGGTTTTTGGAGTGTTTCGTTGGAAATTGCTCAGATGTTTAAGAAACTATAAAATTTCAAAATCAGGAACCCTGATTTTTTTTTCGAAATTTTCAGATTTTCAAAATAAAAATTTCAATTTTAAAACTTCAATTTTAAACTCTTGAATCAACTAGAAAATTCCTTTTTAATCGCTTCGAAAATCAAAGTTCTACGACAATTTTGAGCTGAGTTATAGCCTTCATTGCTGCGANNNNNNNNNNGATTTTCAACTTGATAACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCAAATTTATGTGCTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTAAGCACAACAAAAATGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCAAATTTATGTGCTTTTCGAAATAAAAATTTTCAGCACTCTTCGGCTCCAATCACTTCTGCTCCGCCTCAAAAAGAATCACCACCACCATACGAAAACGCTGAAAAGGAATGGAAGACTGAGAAACCAGAGACCACAGGTAAATTTTGTTTATAACATTCAAAATCTCCAAGAGTTGAAAATACAATTTTTCTGAAAATCTGTAATTCTTGAAAACATTTTTGTTGTGCTTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCAAATTTATGTGCTTTTCGAAATAAAAATTTTCAGCACTCTTCGGCTCCAATCACTTCTGCTCCGCCTCAAAAAGAATCACCACCACCATACGAAAACGCTGAAAAGGAATGGAAGACTGAGAAACCAGAGACCACAGGTAAATTTTGTTTATAACATTCAAAATCTCCAAGAGTTGAAAATWCAATTTTTCTGAAAATCTGTAATTCTTGAAAACATTTTTGTTGTGCTTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28704</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>113649</contig_pos>
        <strand>+</strand>
        <context>TGTTTCAAAA[A/C]TTCATGGAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAGAAACTATATACGAGACTAAAAGTAGATGAAAAATTACTGTTTCAAAA</left_flank>
        <right_flank>TTCATGGAACATGAAAAAATCATCTCGAGCCAATTTTTATCTTTTTGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTAAACGAATTTGAAAAGAAAAACCCGAAAAATGTGTTTGAAGTCATTTGAAAGATGTAGAGAAACGAGACACACTGCGTCTCTAACCCAAAACTTCAAAGAACCACAATGCGGCTCAGAATGGTCGTAGAATCTTAATGCTTAACGTGTTTTGTAGGTAAAATTGGTAAATTTTTAAAACTATAATTCAACATGTTTTTCTGTTTCAAGAGATATTCGACTTTTCTGGACACAAATTTTTCGAAATTTCCAAAAAGCGCCATGATTCAGTTTAAAATTGTGCTTAAAAAGTTAATTTCTTGTTGGTTTTATTGGGGAATATTGATTTGAAATTTGGAAAATGATAATTTGATGGATTTTTGAAGAAGCACAAGAAATAGCTCAAGAATCTGCTTTTTCTTTTCCGTAATTCCGAAAAAACTGCTAGTTTCAATGTACCCTTTTTTCGAGAAACTATATACGAGACTAAAAGTAGATGAAAAATTACTGTTTCAAAAATTCATGGAACATGAAAAAATCATCTCGAGCCAATTTTTATCTTTTTGAAGTTTTGGGCTACAGAGATGCAGAGAAACGAGACACACTGCGTCTCTAGCCCCAAAACTTTTATAGGTAATGTGAAGTATTTTTCATACACTAATGATTCGAGAACTTGACAAGCAAATTTTGAGCCTGAAATTCATGTTCGGAGCGTTTTAGATTTGATTGTTTGAATTTTAATTTTTTCTAGTTTCATTTCGAGCCGAGATGTTTGAAGTTTTTCAGAGACGCAGAGAAGCGAGAGCACTCTTGTGCCTCTGCGTCTCTCACAGGAAACTTCAAATGGCTGTAACTCAGCTCGAAATGAAGCTAGAAACTTGGTTTTTAGAGAATTTTGTTCAGAAAAAATTGCTGTTTCATTAACAATAAGAAAGTTTCCCATGTTGACCATTTTCCACTGAAAAAGTTCAAAAATGACCCATTTTTTGCTCCCCAATACCAATTTTTGTCTATTTCAG</canonical>
            <polymorphic>GATTAAACGAATTTGAAAAGAAAAACCCGAAAAATGTGTTTGAAGTCATTTGAAAGATGTAGAGAAACGAGACACACTGCGTCTCTAACCCAAAACTTCAAAGAACCACAATGCGGCTCAGAATGGTCGTAGAATCTTAATGCTTAACGTGTTTTGTAGGTAAAATTGGTAAATTTTTAAAACTATAATTCAACATGTTTTTCTGTTTCAAGAGATATTCGACTTTTCTGGACACAAATTTTTCGAAATTTCCAAAAAGCGCCATGATTCAGTTTAAAATTGTGCTTAAAAAGTTAATTTCTTGTTGGTTTTATTGGGGAATATTGATTTGAAATTTGGAAAATGATAATTTGATGGATTTTTGAAGAAGCACAAGAAATAGCTCAAGAATCTGCTTTTTCTTTTCCGTAATTCCGAAAAAACTGCTAGTTTCAATGTACCCTTTTTTCGAGAAACTATATACGAGACTAAAAGTAGATGAAAAATTACTGTTTCAAAAMTTCATGGAACATGAAAAAATCATCTCGAGCCAATTTTTATCTTTTTGAAGTTTTGGGCTACAGAGATGCAGAGAAACGAGACACACTGCGTCTCTAGCCCCAAAACTTTTATAGGTAATGTGAAGTATTTTTCATACACTAATGATTCGAGAACTTGACAAGCAAATTTTGAGCCTGAAATTCATGTTCGGAGCGTTTTAGATTTGATTGTTTGAATTTTAATTTTTTCTAGTTTCATTTCGAGCCGAGATGTTTGAAGTTTTTCAGAGACGCAGAGAAGCGAGAGCACTCTTGTGCCTCTGCGTCTCTCACAGGAAACTTCAAATGGCTGTAACTCAGCTCGAAATGAAGCTAGAAACTTGGTTTTTAGAGAATTTTGTTCAGAAAAAATTGCTGTTTCATTAACAATAAGAAAGTTTCCCATGTTGACCATTTTCCACTGAAAAAGTTCAAAAATGACCCATTTTTTGCTCCCCAATACCAATTTTTGTCTATTTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>166 166 162 158 128 86 65 36 14 10 9</canonical_bands>
                <polymorphic_bands>332 162 158 128 86 65 36 14 10 9</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>154 152 133 94 74 62 50 37 36 33 31 18 18 16 15 15 15 14 10 9 8 6</canonical_bands>
                <polymorphic_bands>154 152 133 94 74 62 50 48 37 36 31 18 18 16 15 15 14 10 9 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTAGTTTCAATGTACCCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAAATTTGCTTGTCAAGTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GCTAGTTTCAATGTACCCTTTTTTCGAGAAACTATATACGAGACTAAAAGTAGATGAAAAATTACTGTTTCAAAAATTCATGGAACATGAAAAAATCATCTCGAGCCAATTTTTATCTTTTTGAAGTTTTGGGCTACAGAGATGCAGAGAAACGAGACACACTGCGTCTCTAGCCCCAAAACTTTTATAGGTAATGTGAAGTATTTTTCATACACTAATGATTCGAGAACTTGACAAGCAAATTTT</canonical_amplicon>
		<polymorphic_amplicon>GCTAGTTTCAATGTACCCTTTTTTCGAGAAACTATATACGAGACTAAAAGTAGATGAAAAATTACTGTTTCAAAAMTTCATGGAACATGAAAAAATCATCTCGAGCCAATTTTTATCTTTTTGAAGTTTTGGGCTACAGAGATGCAGAGAAACGAGACACACTGCGTCTCTAGCCCCAAAACTTTTATAGGTAATGTGAAGTATTTTTCATACACTAATGATTCGAGAACTTGACAAGCAAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28705</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>114396</contig_pos>
        <strand>+</strand>
        <context>AAAAATTCGG[G/T]TTTTTTTAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATCCAAATTTCAAGTAGTTTGGTAGTTTCAAAGAATTGTAAAAAATTCGG</left_flank>
        <right_flank>TTTTTTTAAATGTGAATGTACAAAAATTTACTGTTTCAAATCAAAAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATGTTTGAAGTTTTTCAGAGACGCAGAGAAGCGAGAGCACTCTTGTGCCTCTGCGTCTCTCACAGGAAACTTCAAATGGCTGTAACTCAGCTCGAAATGAAGCTAGAAACTTGGTTTTTAGAGAATTTTGTTCAGAAAAAATTGCTGTTTCATTAACAATAAGAAAGTTTCCCATGTTGACCATTTTCCACTGAAAAAGTTCAAAAATGACCCATTTTTTGCTCCCCAATACCAATTTTTGTCTATTTCAGAGCTCCAACCAATCACGTCGCCAGTAAATTGATCAAACATCTAATTGAAGAACTCGATGTGATGGGAGACGTTCTAGAATCTCATATTGTTCATTCCCTAGAAGTTCGGGAGAGATGTACGGAAGCTCTACAGGATGGGATTAGGATGAGAGAGGAGTTTGTGGAGAAAATGCGGGTGAGTTTTTTTTTTTTGAAAATCCAAATTTCAAGTAGTTTGGTAGTTTCAAAGAATTGTAAAAAATTCGGTTTTTTTTAAATGTGAATGTACAAAAATTTACTGTTTCAAATCAAAAATTTGTAATTTTCCCTGTTTCTAACTGATTAGTTAACAAATTTTGTTTTACTCAATTAAAGTATTTAAAGTTTTTTACAATTCGAATATTAAAATCAAGAAAAAAAATATTTCGAGAGTGAGCTAGCTACACGATCGCAAACTTTTTGACTTTGTCCCTTTTTATCTCCGTTACTGTAAGAGGTATCATTAAGTTGTCAACTAAGAAAATGTTTATCATAATATCGGCAAGATTTTATCAGTTGATCACTTTTTGATATCTCTCCCGGTTACCAAGATAACTGAGCTCAAAGGGAAGAATGCCATACTCGCTAGACAACTTTGTTGCAAATTTCATCCACGACTTTGACCCAATTTATCTCTGTTACTGTAAGAGATATCAAACAGTTGTCAACTAGTAAAATGTTTATCATAACATCAGCAACATTTTATCAATTGACACGTTTTGGATTTCT</canonical>
            <polymorphic>AGATGTTTGAAGTTTTTCAGAGACGCAGAGAAGCGAGAGCACTCTTGTGCCTCTGCGTCTCTCACAGGAAACTTCAAATGGCTGTAACTCAGCTCGAAATGAAGCTAGAAACTTGGTTTTTAGAGAATTTTGTTCAGAAAAAATTGCTGTTTCATTAACAATAAGAAAGTTTCCCATGTTGACCATTTTCCACTGAAAAAGTTCAAAAATGACCCATTTTTTGCTCCCCAATACCAATTTTTGTCTATTTCAGAGCTCCAACCAATCACGTCGCCAGTAAATTGATCAAACATCTAATTGAAGAACTCGATGTGATGGGAGACGTTCTAGAATCTCATATTGTTCATTCCCTAGAAGTTCGGGAGAGATGTACGGAAGCTCTACAGGATGGGATTAGGATGAGAGAGGAGTTTGTGGAGAAAATGCGGGTGAGTTTTTTTTTTTTGAAAATCCAAATTTCAAGTAGTTTGGTAGTTTCAAAGAATTGTAAAAAATTCGGKTTTTTTTAAATGTGAATGTACAAAAATTTACTGTTTCAAATCAAAAATTTGTAATTTTCCCTGTTTCTAACTGATTAGTTAACAAATTTTGTTTTACTCAATTAAAGTATTTAAAGTTTTTTACAATTCGAATATTAAAATCAAGAAAAAAAATATTTCGAGAGTGAGCTAGCTACACGATCGCAAACTTTTTGACTTTGTCCCTTTTTATCTCCGTTACTGTAAGAGGTATCATTAAGTTGTCAACTAAGAAAATGTTTATCATAATATCGGCAAGATTTTATCAGTTGATCACTTTTTGATATCTCTCCCGGTTACCAAGATAACTGAGCTCAAAGGGAAGAATGCCATACTCGCTAGACAACTTTGTTGCAAATTTCATCCACGACTTTGACCCAATTTATCTCTGTTACTGTAAGAGATATCAAACAGTTGTCAACTAGTAAAATGTTTATCATAACATCAGCAACATTTTATCAATTGACACGTTTTGGATTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCATATTGTTCATTCCCTAGA</pcr_primer_p1>
		<pcr_primer_p2>AATCAGTTAGAAACAGGGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TCTCATATTGTTCATTCCCTAGAAGTTCGGGAGAGATGTACGGAAGCTCTACAGGATGGGATTAGGATGAGAGAGGAGTTTGTGGAGAAAATGCGGGTGAGTTTTTTTTTTTTGAAAATCCAAATTTCAAGTAGTTTGGTAGTTTCAAAGAATTGTAAAAAATTCGGTTTTTTTTAAATGTGAATGTACAAAAATTTACTGTTTCAAATCAAAAATTTGTAATTTTCCCTGTTTCTAACTGATT</canonical_amplicon>
		<polymorphic_amplicon>TCTCATATTGTTCATTCCCTAGAAGTTCGGGAGAGATGTACGGAAGCTCTACAGGATGGGATTAGGATGAGAGAGGAGTTTGTGGAGAAAATGCGGGTGAGTTTTTTTTTTTTGAAAATCCAAATTTCAAGTAGTTTGGTAGTTTCAAAGAATTGTAAAAAATTCGGKTTTTTTTAAATGTGAATGTACAAAAATTTACTGTTTCAAATCAAAAATTTGTAATTTTCCCTGTTTCTAACTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28706</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>114586</contig_pos>
        <strand></strand>
        <context>ATCGCAAACT[T/C]tttgactttg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATCAAGAAAAAAAATATTTCGAGAGTGAGCTAGCTACACGATCGCAAACT</left_flank>
        <right_flank>TTTGACTTTGTCCCTTTTTATCTCCGTTACTGTAAGAGGTATCATTAAGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTGAAAAAGTTCAAAAATGACCCATTTTTTGCTCCCCAATACCAATTTTTGTCTATTTCAGAGCTCCAACCAATCACGTCGCCAGTAAATTGATCAAACATCTAATTGAAGAACTCGATGTGATGGGAGACGTTCTAGAATCTCATATTGTTCATTCCCTAGAAGTTCGGGAGAGATGTACGGAAGCTCTACAGGATGGGATTAGGATGAGAGAGGAGTTTGTGGAGAAAATGCGGGTGAGTTTTTTTTTTTTGAAAATCCAAATTTCAAGTAGTTTGGTAGTTTCAAAGAATTGTAAAAAATTCGGTTTTTTTTAAATGTGAATGTACAAAAATTTACTGTTTCAAATCAAAAATTTGTAATTTTCCCTGTTTCTAACTGATTAGTTAACAAATTTTGTTTTACTCAATTAAAGTATTTAAAGTTTTTTACAATTCGAATATTAAAATCAAGAAAAAAAATATTTCGAGAGTGAGCTAGCTACACGATCGCAAACTTTTTGACTTTGTCCCTTTTTATCTCCGTTACTGTAAGAGGTATCATTAAGTTGTCAACTAAGAAAATGTTTATCATAATATCGGCAAGATTTTATCAGTTGATCACTTTTTGATATCTCTCCCGGTTACCAAGATAACTGAGCTCAAAGGGAAGAATGCCATACTCGCTAGACAACTTTGTTGCAAATTTCATCCACGACTTTGACCCAATTTATCTCTGTTACTGTAAGAGATATCAAACAGTTGTCAACTAGTAAAATGTTTATCATAACATCAGCAACATTTTATCAATTGACACGTTTTGGATTTCTTGTACAGTAACCGAGAACAGTGAGGTTAAAGGTGCAGCTACGCGCTTGCAAACTCGACCCACGACTTTGACCCTAGTTATCTAGGTTACTGTAAGAGACATCAACAAGTTGTCAACTAATGAAATGTTTATCATATTATCAGAAATATTTTATTAATTGACTATTTTTTGATATCTCTGACAGTAAACGA</canonical>
            <polymorphic>CACTGAAAAAGTTCAAAAATGACCCATTTTTTGCTCCCCAATACCAATTTTTGTCTATTTCAGAGCTCCAACCAATCACGTCGCCAGTAAATTGATCAAACATCTAATTGAAGAACTCGATGTGATGGGAGACGTTCTAGAATCTCATATTGTTCATTCCCTAGAAGTTCGGGAGAGATGTACGGAAGCTCTACAGGATGGGATTAGGATGAGAGAGGAGTTTGTGGAGAAAATGCGGGTGAGTTTTTTTTTTTTGAAAATCCAAATTTCAAGTAGTTTGGTAGTTTCAAAGAATTGTAAAAAATTCGGTTTTTTTTAAATGTGAATGTACAAAAATTTACTGTTTCAAATCAAAAATTTGTAATTTTCCCTGTTTCTAACTGATTAGTTAACAAATTTTGTTTTACTCAATTAAAGTATTTAAAGTTTTTTACAATTCGAATATTAAAATCAAGAAAAAAAATATTTCGAGAGTGAGCTAGCTACACGATCGCAAACTYTTTGACTTTGTCCCTTTTTATCTCCGTTACTGTAAGAGGTATCATTAAGTTGTCAACTAAGAAAATGTTTATCATAATATCGGCAAGATTTTATCAGTTGATCACTTTTTGATATCTCTCCCGGTTACCAAGATAACTGAGCTCAAAGGGAAGAATGCCATACTCGCTAGACAACTTTGTTGCAAATTTCATCCACGACTTTGACCCAATTTATCTCTGTTACTGTAAGAGATATCAAACAGTTGTCAACTAGTAAAATGTTTATCATAACATCAGCAACATTTTATCAATTGACACGTTTTGGATTTCTTGTACAGTAACCGAGAACAGTGAGGTTAAAGGTGCAGCTACGCGCTTGCAAACTCGACCCACGACTTTGACCCTAGTTATCTAGGTTACTGTAAGAGACATCAACAAGTTGTCAACTAATGAAATGTTTATCATATTATCAGAAATATTTTATTAATTGACTATTTTTTGATATCTCTGACAGTAAACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTCGAATATTAAAATCAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>GAATTTGCAAGACTTGTATCG</pcr_primer_p2>
		<pcr_amplicon_size>615</pcr_amplicon_size>
		<canonical_amplicon>CAATTCGAATATTAAAATCAAGAAAAAAAATATTTCGAGAGTGAGCTAGCTACACGATCGCAAACTTTTTGACTTTGTCCCTTTTTA</canonical_amplicon>
		<polymorphic_amplicon>CAATTCGAATATTAAAATCAAGAAAAAAAATATTTCGAGAGTGAGCTAGCTACACGATCGCAAACTYTTTGACTTTGTCCCTTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28707</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>114611</contig_pos>
        <strand></strand>
        <context>tttttatctc[C/G]gttactgtaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGAGCTAGCTACACGATCGCAAACTTTTTGACTTTGTCCCTTTTTATCTC</left_flank>
        <right_flank>GTTACTGTAAGAGGTATCATTAAGTTGTCAACTAAGAAAATGTTTATCAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTGCTCCCCAATACCAATTTTTGTCTATTTCAGAGCTCCAACCAATCACGTCGCCAGTAAATTGATCAAACATCTAATTGAAGAACTCGATGTGATGGGAGACGTTCTAGAATCTCATATTGTTCATTCCCTAGAAGTTCGGGAGAGATGTACGGAAGCTCTACAGGATGGGATTAGGATGAGAGAGGAGTTTGTGGAGAAAATGCGGGTGAGTTTTTTTTTTTTGAAAATCCAAATTTCAAGTAGTTTGGTAGTTTCAAAGAATTGTAAAAAATTCGGTTTTTTTTAAATGTGAATGTACAAAAATTTACTGTTTCAAATCAAAAATTTGTAATTTTCCCTGTTTCTAACTGATTAGTTAACAAATTTTGTTTTACTCAATTAAAGTATTTAAAGTTTTTTACAATTCGAATATTAAAATCAAGAAAAAAAATATTTCGAGAGTGAGCTAGCTACACGATCGCAAACTTTTTGACTTTGTCCCTTTTTATCTCCGTTACTGTAAGAGGTATCATTAAGTTGTCAACTAAGAAAATGTTTATCATAATATCGGCAAGATTTTATCAGTTGATCACTTTTTGATATCTCTCCCGGTTACCAAGATAACTGAGCTCAAAGGGAAGAATGCCATACTCGCTAGACAACTTTGTTGCAAATTTCATCCACGACTTTGACCCAATTTATCTCTGTTACTGTAAGAGATATCAAACAGTTGTCAACTAGTAAAATGTTTATCATAACATCAGCAACATTTTATCAATTGACACGTTTTGGATTTCTTGTACAGTAACCGAGAACAGTGAGGTTAAAGGTGCAGCTACGCGCTTGCAAACTCGACCCACGACTTTGACCCTAGTTATCTAGGTTACTGTAAGAGACATCAACAAGTTGTCAACTAATGAAATGTTTATCATATTATCAGAAATATTTTATTAATTGACTATTTTTTGATATCTCTGACAGTAAACGAGATAAGGAGGGTCGAATTAAAAGGT</canonical>
            <polymorphic>ATTTTTTGCTCCCCAATACCAATTTTTGTCTATTTCAGAGCTCCAACCAATCACGTCGCCAGTAAATTGATCAAACATCTAATTGAAGAACTCGATGTGATGGGAGACGTTCTAGAATCTCATATTGTTCATTCCCTAGAAGTTCGGGAGAGATGTACGGAAGCTCTACAGGATGGGATTAGGATGAGAGAGGAGTTTGTGGAGAAAATGCGGGTGAGTTTTTTTTTTTTGAAAATCCAAATTTCAAGTAGTTTGGTAGTTTCAAAGAATTGTAAAAAATTCGGTTTTTTTTAAATGTGAATGTACAAAAATTTACTGTTTCAAATCAAAAATTTGTAATTTTCCCTGTTTCTAACTGATTAGTTAACAAATTTTGTTTTACTCAATTAAAGTATTTAAAGTTTTTTACAATTCGAATATTAAAATCAAGAAAAAAAATATTTCGAGAGTGAGCTAGCTACACGATCGCAAACTTTTTGACTTTGTCCCTTTTTATCTCSGTTACTGTAAGAGGTATCATTAAGTTGTCAACTAAGAAAATGTTTATCATAATATCGGCAAGATTTTATCAGTTGATCACTTTTTGATATCTCTCCCGGTTACCAAGATAACTGAGCTCAAAGGGAAGAATGCCATACTCGCTAGACAACTTTGTTGCAAATTTCATCCACGACTTTGACCCAATTTATCTCTGTTACTGTAAGAGATATCAAACAGTTGTCAACTAGTAAAATGTTTATCATAACATCAGCAACATTTTATCAATTGACACGTTTTGGATTTCTTGTACAGTAACCGAGAACAGTGAGGTTAAAGGTGCAGCTACGCGCTTGCAAACTCGACCCACGACTTTGACCCTAGTTATCTAGGTTACTGTAAGAGACATCAACAAGTTGTCAACTAATGAAATGTTTATCATATTATCAGAAATATTTTATTAATTGACTATTTTTTGATATCTCTGACAGTAAACGAGATAAGGAGGGTCGAATTAAAAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATATTTCGAGAGTGAGCTA</pcr_primer_p1>
		<pcr_primer_p2>GAATTTGCAAGACTTGTATCG</pcr_primer_p2>
		<pcr_amplicon_size>590</pcr_amplicon_size>
		<canonical_amplicon>AAAAATATTTCGAGAGTGAGCTAGCTACACGATCGCAAACTTTTTGACTTTGTCCCTTTTTATCTCCGTTACTGTAAGAGGTATCAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATATTTCGAGAGTGAGCTAGCTACACGATCGCAAACTTTTTGACTTTGTCCCTTTTTATCTCSGTTACTGTAAGAGGTATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28708</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>114668</contig_pos>
        <strand></strand>
        <context>tcataatatc[G/A]gcaagatttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTAAGAGGTATCATTAAGTTGTCAACTAAGAAAATGTTTATCATAATATC</left_flank>
        <right_flank>GCAAGATTTTATCAGTTGATCACTTTTTGATATCTCTCCCGGTTACCAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCAGTAAATTGATCAAACATCTAATTGAAGAACTCGATGTGATGGGAGACGTTCTAGAATCTCATATTGTTCATTCCCTAGAAGTTCGGGAGAGATGTACGGAAGCTCTACAGGATGGGATTAGGATGAGAGAGGAGTTTGTGGAGAAAATGCGGGTGAGTTTTTTTTTTTTGAAAATCCAAATTTCAAGTAGTTTGGTAGTTTCAAAGAATTGTAAAAAATTCGGTTTTTTTTAAATGTGAATGTACAAAAATTTACTGTTTCAAATCAAAAATTTGTAATTTTCCCTGTTTCTAACTGATTAGTTAACAAATTTTGTTTTACTCAATTAAAGTATTTAAAGTTTTTTACAATTCGAATATTAAAATCAAGAAAAAAAATATTTCGAGAGTGAGCTAGCTACACGATCGCAAACTTTTTGACTTTGTCCCTTTTTATCTCCGTTACTGTAAGAGGTATCATTAAGTTGTCAACTAAGAAAATGTTTATCATAATATCGGCAAGATTTTATCAGTTGATCACTTTTTGATATCTCTCCCGGTTACCAAGATAACTGAGCTCAAAGGGAAGAATGCCATACTCGCTAGACAACTTTGTTGCAAATTTCATCCACGACTTTGACCCAATTTATCTCTGTTACTGTAAGAGATATCAAACAGTTGTCAACTAGTAAAATGTTTATCATAACATCAGCAACATTTTATCAATTGACACGTTTTGGATTTCTTGTACAGTAACCGAGAACAGTGAGGTTAAAGGTGCAGCTACGCGCTTGCAAACTCGACCCACGACTTTGACCCTAGTTATCTAGGTTACTGTAAGAGACATCAACAAGTTGTCAACTAATGAAATGTTTATCATATTATCAGAAATATTTTATTAATTGACTATTTTTTGATATCTCTGACAGTAAACGAGATAAGGAGGGTCGAATTAAAAGGTGCCGATACAAGTCTTGCAAATTCGATCCACGACTTTGTTTATCTCGGCTACTGTTAA</canonical>
            <polymorphic>GCCAGTAAATTGATCAAACATCTAATTGAAGAACTCGATGTGATGGGAGACGTTCTAGAATCTCATATTGTTCATTCCCTAGAAGTTCGGGAGAGATGTACGGAAGCTCTACAGGATGGGATTAGGATGAGAGAGGAGTTTGTGGAGAAAATGCGGGTGAGTTTTTTTTTTTTGAAAATCCAAATTTCAAGTAGTTTGGTAGTTTCAAAGAATTGTAAAAAATTCGGTTTTTTTTAAATGTGAATGTACAAAAATTTACTGTTTCAAATCAAAAATTTGTAATTTTCCCTGTTTCTAACTGATTAGTTAACAAATTTTGTTTTACTCAATTAAAGTATTTAAAGTTTTTTACAATTCGAATATTAAAATCAAGAAAAAAAATATTTCGAGAGTGAGCTAGCTACACGATCGCAAACTTTTTGACTTTGTCCCTTTTTATCTCCGTTACTGTAAGAGGTATCATTAAGTTGTCAACTAAGAAAATGTTTATCATAATATCRGCAAGATTTTATCAGTTGATCACTTTTTGATATCTCTCCCGGTTACCAAGATAACTGAGCTCAAAGGGAAGAATGCCATACTCGCTAGACAACTTTGTTGCAAATTTCATCCACGACTTTGACCCAATTTATCTCTGTTACTGTAAGAGATATCAAACAGTTGTCAACTAGTAAAATGTTTATCATAACATCAGCAACATTTTATCAATTGACACGTTTTGGATTTCTTGTACAGTAACCGAGAACAGTGAGGTTAAAGGTGCAGCTACGCGCTTGCAAACTCGACCCACGACTTTGACCCTAGTTATCTAGGTTACTGTAAGAGACATCAACAAGTTGTCAACTAATGAAATGTTTATCATATTATCAGAAATATTTTATTAATTGACTATTTTTTGATATCTCTGACAGTAAACGAGATAAGGAGGGTCGAATTAAAAGGTGCCGATACAAGTCTTGCAAATTCGATCCACGACTTTGTTTATCTCGGCTACTGTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATATTTCGAGAGTGAGCTA</pcr_primer_p1>
		<pcr_primer_p2>GAATTTGCAAGACTTGTATCG</pcr_primer_p2>
		<pcr_amplicon_size>590</pcr_amplicon_size>
		<canonical_amplicon>AAAAATATTTCGAGAGTGAGCTAGCTACACGATCGCAAACTTTTTGACTTTGTCCCTTTTTATCTCCGTTACTGTAAGAGGTATCATTAAGTTGTCAACTAAGAAAATGTTTATCATAATATCGGCAAGATTTTATCAGTTGATCACTTTTTGATATCTCTCCCGGTTACCAAGATAACTGAGCTCAAAGGGAAGAATGCCATACTCGCTAGACAACTTTGTTGCAAATTTCATCCACGACTTTGACCCAATTTATCTCTGTTACTGTAAGAGATATCAAACAGTTGTCAACTAGTAAAATGTTTATCATAACATCAGCAACATTTTATCAATTGACACGTTTTGGATTTCTTGTACAGTAACCGAGAACAGTGAGGTTAAAGGTGCAGCTACGCGCTTGCAAACTCGACCCACGACTTTGACCCTAGTTATCTAGGTTACTGTAAGAGACATCAACAAGTTGTCAACTAATGAAATGTTTATCATATTATCAGAAATATTTTATTAATTGACTATTTTTTGATATCTCTGACAGTAAACGAGATAAGGAGGGTCGAATTAAAAGGTGCCGATACAAGTCTTGCAAATTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATATTTCGAGAGTGAGCTAGCTACACGATCGCAAACTTTTTGACTTTGTCCCTTTTTATCTCCGTTACTGTAAGAGGTATCATTAAGTTGTCAACTAAGAAAATGTTTATCATAATATCRGCAAGATTTTATCAGTTGATCACTTTTTGATATCTCTCCCGGTTACCAAGATAACTGAGCTCAAAGGGAAGAATGCCATACTCGCTAGACAACTTTGTTGCAAATTTCATCCACGACTTTGACCCAATTTATCTCTGTTACTGTAAGAGATATCAAACAGTTGTCAACTAGTAAAATGTTTATCATAACATCAGCAACATTTTATCAATTGACACGTTTTGGATTTCTTGTACAGTAACCGAGAACAGTGAGGTTAAAGGTGCAGCTACGCGCTTGCAAACTCGACCCACGACTTTGACCCTAGTTATCTAGGTTACTGTAAGAGACATCAACAAGTTGTCAACTAATGAAATGTTTATCATATTATCAGAAATATTTTATTAATTGACTATTTTTTGATATCTCTGACAGTAAACGAGATAAGGAGGGTCGAATTAAAAGGTGCCGATACAAGTCTTGCAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28709</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>114707</contig_pos>
        <strand></strand>
        <context>gatatctctc[C/A]cggttaccaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATCATAATATCGGCAAGATTTTATCAGTTGATCACTTTTTGATATCTCTC</left_flank>
        <right_flank>CGGTTACCAAGATAACTGAGCTCAAAGGGAAGAATGCCATACTCGCTAGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGATGGGAGACGTTCTAGAATCTCATATTGTTCATTCCCTAGAAGTTCGGGAGAGATGTACGGAAGCTCTACAGGATGGGATTAGGATGAGAGAGGAGTTTGTGGAGAAAATGCGGGTGAGTTTTTTTTTTTTGAAAATCCAAATTTCAAGTAGTTTGGTAGTTTCAAAGAATTGTAAAAAATTCGGTTTTTTTTAAATGTGAATGTACAAAAATTTACTGTTTCAAATCAAAAATTTGTAATTTTCCCTGTTTCTAACTGATTAGTTAACAAATTTTGTTTTACTCAATTAAAGTATTTAAAGTTTTTTACAATTCGAATATTAAAATCAAGAAAAAAAATATTTCGAGAGTGAGCTAGCTACACGATCGCAAACTTTTTGACTTTGTCCCTTTTTATCTCCGTTACTGTAAGAGGTATCATTAAGTTGTCAACTAAGAAAATGTTTATCATAATATCGGCAAGATTTTATCAGTTGATCACTTTTTGATATCTCTCCCGGTTACCAAGATAACTGAGCTCAAAGGGAAGAATGCCATACTCGCTAGACAACTTTGTTGCAAATTTCATCCACGACTTTGACCCAATTTATCTCTGTTACTGTAAGAGATATCAAACAGTTGTCAACTAGTAAAATGTTTATCATAACATCAGCAACATTTTATCAATTGACACGTTTTGGATTTCTTGTACAGTAACCGAGAACAGTGAGGTTAAAGGTGCAGCTACGCGCTTGCAAACTCGACCCACGACTTTGACCCTAGTTATCTAGGTTACTGTAAGAGACATCAACAAGTTGTCAACTAATGAAATGTTTATCATATTATCAGAAATATTTTATTAATTGACTATTTTTTGATATCTCTGACAGTAAACGAGATAAGGAGGGTCGAATTAAAAGGTGCCGATACAAGTCTTGCAAATTCGATCCACGACTTTGTTTATCTCGGCTACTGTTAAAAATATCAAAAAGTAGTCAACTGATAAAATTTTCAGCAT</canonical>
            <polymorphic>GTGATGGGAGACGTTCTAGAATCTCATATTGTTCATTCCCTAGAAGTTCGGGAGAGATGTACGGAAGCTCTACAGGATGGGATTAGGATGAGAGAGGAGTTTGTGGAGAAAATGCGGGTGAGTTTTTTTTTTTTGAAAATCCAAATTTCAAGTAGTTTGGTAGTTTCAAAGAATTGTAAAAAATTCGGTTTTTTTTAAATGTGAATGTACAAAAATTTACTGTTTCAAATCAAAAATTTGTAATTTTCCCTGTTTCTAACTGATTAGTTAACAAATTTTGTTTTACTCAATTAAAGTATTTAAAGTTTTTTACAATTCGAATATTAAAATCAAGAAAAAAAATATTTCGAGAGTGAGCTAGCTACACGATCGCAAACTTTTTGACTTTGTCCCTTTTTATCTCCGTTACTGTAAGAGGTATCATTAAGTTGTCAACTAAGAAAATGTTTATCATAATATCGGCAAGATTTTATCAGTTGATCACTTTTTGATATCTCTCMCGGTTACCAAGATAACTGAGCTCAAAGGGAAGAATGCCATACTCGCTAGACAACTTTGTTGCAAATTTCATCCACGACTTTGACCCAATTTATCTCTGTTACTGTAAGAGATATCAAACAGTTGTCAACTAGTAAAATGTTTATCATAACATCAGCAACATTTTATCAATTGACACGTTTTGGATTTCTTGTACAGTAACCGAGAACAGTGAGGTTAAAGGTGCAGCTACGCGCTTGCAAACTCGACCCACGACTTTGACCCTAGTTATCTAGGTTACTGTAAGAGACATCAACAAGTTGTCAACTAATGAAATGTTTATCATATTATCAGAAATATTTTATTAATTGACTATTTTTTGATATCTCTGACAGTAAACGAGATAAGGAGGGTCGAATTAAAAGGTGCCGATACAAGTCTTGCAAATTCGATCCACGACTTTGTTTATCTCGGCTACTGTTAAAAATATCAAAAAGTAGTCAACTGATAAAATTTTCAGCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATATTTCGAGAGTGAGCTA</pcr_primer_p1>
		<pcr_primer_p2>GAATTTGCAAGACTTGTATCG</pcr_primer_p2>
		<pcr_amplicon_size>590</pcr_amplicon_size>
		<canonical_amplicon>AAAAATATTTCGAGAGTGAGCTAGCTACACGATCGCAAACTTTTTGACTTTGTCCCTTTTTATCTCCGTTACTGTAAGAGGTATCATTAAGTTGTCAACTAAGAAAATGTTTATCATAATATCGGCAAGATTTTATCAGTTGATCACTTTTTGATATCTCTCCCGGTTACCAAGATAACTGAGCTCAAAGGGAAGAATGCCATACTCGCTAGACAACTTTGTTGCAAATTTCATCCACGACTTTGACCCAATTTATCTCTGTTACTGTAAGAGATATCAAACAGTTGTCAACTAGTAAAATGTTTATCATAACATCAGCAACATTTTATCAATTGACACGTTTTGGATTTCTTGTACAGTAACCGAGAACAGTGAGGTTAAAGGTGCAGCTACGCGCTTGCAAACTCGACCCACGACTTTGACCCTAGTTATCTAGGTTACTGTAAGAGACATCAACAAGTTGTCAACTAATGAAATGTTTATCATATTATCAGAAATATTTTATTAATTGACTATTTTTTGATATCTCTGACAGTAAACGAGATAAGGAGGGTCGAATTAAAAGGTGCCGATACAAGTCTTGCAAATTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATATTTCGAGAGTGAGCTAGCTACACGATCGCAAACTTTTTGACTTTGTCCCTTTTTATCTCCGTTACTGTAAGAGGTATCATTAAGTTGTCAACTAAGAAAATGTTTATCATAATATCGGCAAGATTTTATCAGTTGATCACTTTTTGATATCTCTCMCGGTTACCAAGATAACTGAGCTCAAAGGGAAGAATGCCATACTCGCTAGACAACTTTGTTGCAAATTTCATCCACGACTTTGACCCAATTTATCTCTGTTACTGTAAGAGATATCAAACAGTTGTCAACTAGTAAAATGTTTATCATAACATCAGCAACATTTTATCAATTGACACGTTTTGGATTTCTTGTACAGTAACCGAGAACAGTGAGGTTAAAGGTGCAGCTACGCGCTTGCAAACTCGACCCACGACTTTGACCCTAGTTATCTAGGTTACTGTAAGAGACATCAACAAGTTGTCAACTAATGAAATGTTTATCATATTATCAGAAATATTTTATTAATTGACTATTTTTTGATATCTCTGACAGTAAACGAGATAAGGAGGGTCGAATTAAAAGGTGCCGATACAAGTCTTGCAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28710</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>175781</contig_pos>
        <strand>+</strand>
        <context>GAGAGATAAT[C/T]AWATTATCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTCTATAATAACTTCTGAATAAAGTTTTGATATCAACGAGAGATAAT</left_flank>
        <right_flank>ATATTATCAGAAAATTTAAGACAATTTGAAACAGCAAAAAAAACCATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATTTTTTGATCTTGAAAATTCAATTTGAGCTCTTTGAGCTCAATTATTTATGTTCCTGTAAGAGATACCATAAACCTGTCAACTGATAAAACATTTATCTTTCTATCTGCATTATTATTAGTTGACCTTTTTATGATATCTCTTACAGTAACCGAGATAAATGAGCTCAAAGCAAATGTATCGTGAAATCAGTACCAGCAGGACCTTTACTTTCATTTTTCAGTTGACCACTTTTTGATACATTCTACAGTAACCGAGATATAAGAGCTCAACGAGCACGAGCTTCAATTTTTTAAAGGTTATTCTAAAAATGAAGACTATCAAACCAACAGAGATTAATGTGTTTTCTGAGAATTTCAATAAAGTTGAAACAGCAAAAAATTTGATATCGGAAAGGATTCAAAAAAATTTGAAAGTCAAAAGATATATTTTGCCTGAAAATTTCAAATTTTCTATAATAACTTCTGAATAAAGTTTTGATATCAACGAGAGATAATTATATTATCAGAAAATTTAAGACAATTTGAAACAGCAAAAAAAACCATTTTACAAAAAAAAATTACCCAAAAATTTCAGATTTTTCAATTTTTTTCTTTTTCGAATTTTGAAATTAAAATTTGGAAAACTAAAAAACCCCTTTTTTCTGAACATTTCAGATTGAAAAACTATTCTGGAAATGAGAAAAAATCTTGAATTCACCGATAGAAAATTATACTTTTCGAAAATTCTAGAAATTTTGAAATAGAAAAAAAAATTTTCTGAAATTTTCAGATTTTTTTGGATTACTGGAACCAAATAATTTTTTCCGGATTAGAACAAAGTATAATTTTTGAAAAAATGTGAAACAGGAAACTGAAAAATTTTGAAAACGCTCTATTTCTTAACATTAAACATTTCCATTTTCCTGAATACGGTACTAATACCTGCCTACTTAATTCCTTCCCTTTTGCCTTATCTTTCTTATCAGTGATAGCAATTTCAAGGTGCATACAATCATT</canonical>
            <polymorphic>TGATTTTTTGATCTTGAAAATTCAATTTGAGCTCTTTGAGCTCAATTATTTATGTTCCTGTAAGAGATACCATAAACCTGTCAACTGATAAAACATTTATCTTTCTATCTGCATTATTATTAGTTGACCTTTTTATGATATCTCTTACAGTAACCGAGATAAATGAGCTCAAAGCAAATGTATCGTGAAATCAGTACCAGCAGGACCTTTACTTTCATTTTTCAGTTGACCACTTTTTGATACATTCTACAGTAACCGAGATATAAGAGCTCAACGAGCACGAGCTTCAATTTTTTAAAGGTTATTCTAAAAATGAAGACTATCAAACCAACAGAGATTAATGTGTTTTCTGAGAATTTCAATAAAGTTGAAACAGCAAAAAATTTGATATCGGAAAGGATTCAAAAAAATTTGAAAGTCAAAAGATATATTTTGCCTGAAAATTTCAAATTTTCTATAATAACTTCTGAATAAAGTTTTGATATCAACGAGAGATAATYATATTATCAGAAAATTTAAGACAATTTGAAACAGCAAAAAAAACCATTTTACAAAAAAAAATTACCCAAAAATTTCAGATTTTTCAATTTTTTTCTTTTTCGAATTTTGAAATTAAAATTTGGAAAACTAAAAAACCCCTTTTTTCTGAACATTTCAGATTGAAAAACTATTCTGGAAATGAGAAAAAATCTTGAATTCACCGATAGAAAATTATACTTTTCGAAAATTCTAGAAATTTTGAAATAGAAAAAAAAATTTTCTGAAATTTTCAGATTTTTTTGGATTACTGGAACCAAATAATTTTTTCCGGATTAGAACAAAGTATAATTTTTGAAAAAATGTGAAACAGGAAACTGAAAAATTTTGAAAACGCTCTATTTCTTAACATTAAACATTTCCATTTTCCTGAATACGGTACTAATACCTGCCTACTTAATTCCTTCCCTTTTGCCTTATCTTTCTTATCAGTGATAGCAATTTCAAGGTGCATACAATCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>245 78 75 66 48 41 37 35 34 33 27 27 27 24 20 20 18 17 16 16 15 15 11 10 10 9 8 7 6 5</canonical_bands>
                <polymorphic_bands>245 78 75 66 64 41 37 35 34 33 27 27 27 24 20 20 18 17 16 15 15 11 10 10 9 8 7 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGAGATTAATGTGTTTTCTGAG</pcr_primer_p1>
		<pcr_primer_p2>ATCTGAAATTTTTGGGTAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACAGAGATTAATGTGTTTTCTGAGAATTTCAATAAAGTTGAAACAGCAAAAAATTTGATATCGGAAAGGATTCAAAAAAATTTGAAAGTCAAAAGATATATTTTGCCTGAAAATTTCAAATTTTCTATAATAACTTCTGAATAAAGTTTTGATATCAACGAGAGATAATTATATTATCAGAAAATTTAAGACAATTTGAAACAGCAAAAAAAACCATTTTACAAAAAAAAATTACCCAAAAATTTCAGAT</canonical_amplicon>
		<polymorphic_amplicon>ACAGAGATTAATGTGTTTTCTGAGAATTTCAATAAAGTTGAAACAGCAAAAAATTTGATATCGGAAAGGATTCAAAAAAATTTGAAAGTCAAAAGATATATTTTGCCTGAAAATTTCAAATTTTCTATAATAACTTCTGAATAAAGTTTTGATATCAACGAGAGATAATYATATTATCAGAAAATTTAAGACAATTTGAAACAGCAAAAAAAACCATTTTACAAAAAAAAATTACCCAAAAATTTCAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28711</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>175783</contig_pos>
        <strand>+</strand>
        <context>GAGATAATYA[A/T]ATTATCAGWA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCTATAATAACTTCTGAATAAAGTTTTGATATCAACGAGAGATAATTA</left_flank>
        <right_flank>ATTATCAGAAAATTTAAGACAATTTGAAACAGCAAAAAAAACCATTTTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTGATCTTGAAAATTCAATTTGAGCTCTTTGAGCTCAATTATTTATGTTCCTGTAAGAGATACCATAAACCTGTCAACTGATAAAACATTTATCTTTCTATCTGCATTATTATTAGTTGACCTTTTTATGATATCTCTTACAGTAACCGAGATAAATGAGCTCAAAGCAAATGTATCGTGAAATCAGTACCAGCAGGACCTTTACTTTCATTTTTCAGTTGACCACTTTTTGATACATTCTACAGTAACCGAGATATAAGAGCTCAACGAGCACGAGCTTCAATTTTTTAAAGGTTATTCTAAAAATGAAGACTATCAAACCAACAGAGATTAATGTGTTTTCTGAGAATTTCAATAAAGTTGAAACAGCAAAAAATTTGATATCGGAAAGGATTCAAAAAAATTTGAAAGTCAAAAGATATATTTTGCCTGAAAATTTCAAATTTTCTATAATAACTTCTGAATAAAGTTTTGATATCAACGAGAGATAATTATATTATCAGAAAATTTAAGACAATTTGAAACAGCAAAAAAAACCATTTTACAAAAAAAAATTACCCAAAAATTTCAGATTTTTCAATTTTTTTCTTTTTCGAATTTTGAAATTAAAATTTGGAAAACTAAAAAACCCCTTTTTTCTGAACATTTCAGATTGAAAAACTATTCTGGAAATGAGAAAAAATCTTGAATTCACCGATAGAAAATTATACTTTTCGAAAATTCTAGAAATTTTGAAATAGAAAAAAAAATTTTCTGAAATTTTCAGATTTTTTTGGATTACTGGAACCAAATAATTTTTTCCGGATTAGAACAAAGTATAATTTTTGAAAAAATGTGAAACAGGAAACTGAAAAATTTTGAAAACGCTCTATTTCTTAACATTAAACATTTCCATTTTCCTGAATACGGTACTAATACCTGCCTACTTAATTCCTTCCCTTTTGCCTTATCTTTCTTATCAGTGATAGCAATTTCAAGGTGCATACAATCATTCA</canonical>
            <polymorphic>ATTTTTTGATCTTGAAAATTCAATTTGAGCTCTTTGAGCTCAATTATTTATGTTCCTGTAAGAGATACCATAAACCTGTCAACTGATAAAACATTTATCTTTCTATCTGCATTATTATTAGTTGACCTTTTTATGATATCTCTTACAGTAACCGAGATAAATGAGCTCAAAGCAAATGTATCGTGAAATCAGTACCAGCAGGACCTTTACTTTCATTTTTCAGTTGACCACTTTTTGATACATTCTACAGTAACCGAGATATAAGAGCTCAACGAGCACGAGCTTCAATTTTTTAAAGGTTATTCTAAAAATGAAGACTATCAAACCAACAGAGATTAATGTGTTTTCTGAGAATTTCAATAAAGTTGAAACAGCAAAAAATTTGATATCGGAAAGGATTCAAAAAAATTTGAAAGTCAAAAGATATATTTTGCCTGAAAATTTCAAATTTTCTATAATAACTTCTGAATAAAGTTTTGATATCAACGAGAGATAATTAWATTATCAGAAAATTTAAGACAATTTGAAACAGCAAAAAAAACCATTTTACAAAAAAAAATTACCCAAAAATTTCAGATTTTTCAATTTTTTTCTTTTTCGAATTTTGAAATTAAAATTTGGAAAACTAAAAAACCCCTTTTTTCTGAACATTTCAGATTGAAAAACTATTCTGGAAATGAGAAAAAATCTTGAATTCACCGATAGAAAATTATACTTTTCGAAAATTCTAGAAATTTTGAAATAGAAAAAAAAATTTTCTGAAATTTTCAGATTTTTTTGGATTACTGGAACCAAATAATTTTTTCCGGATTAGAACAAAGTATAATTTTTGAAAAAATGTGAAACAGGAAACTGAAAAATTTTGAAAACGCTCTATTTCTTAACATTAAACATTTCCATTTTCCTGAATACGGTACTAATACCTGCCTACTTAATTCCTTCCCTTTTGCCTTATCTTTCTTATCAGTGATAGCAATTTCAAGGTGCATACAATCATTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGAGATTAATGTGTTTTCTGAG</pcr_primer_p1>
		<pcr_primer_p2>ATCTGAAATTTTTGGGTAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACAGAGATTAATGTGTTTTCTGAGAATTTCAATAAAGTTGAAACAGCAAAAAATTTGATATCGGAAAGGATTCAAAAAAATTTGAAAGTCAAAAGATATATTTTGCCTGAAAATTTCAAATTTTCTATAATAACTTCTGAATAAAGTTTTGATATCAACGAGAGATAATTATATTATCAGAAAATTTAAGACAATTTGAAACAGCAAAAAAAACCATTTTACAAAAAAAAATTACCCAAAAATTTCAGAT</canonical_amplicon>
		<polymorphic_amplicon>ACAGAGATTAATGTGTTTTCTGAGAATTTCAATAAAGTTGAAACAGCAAAAAATTTGATATCGGAAAGGATTCAAAAAAATTTGAAAGTCAAAAGATATATTTTGCCTGAAAATTTCAAATTTTCTATAATAACTTCTGAATAAAGTTTTGATATCAACGAGAGATAATTAWATTATCAGAAAATTTAAGACAATTTGAAACAGCAAAAAAAACCATTTTACAAAAAAAAATTACCCAAAAATTTCAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28712</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>175792</contig_pos>
        <strand>+</strand>
        <context>AWATTATCAG[A/T]AAAMTTAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAACTTCTGAATAAAGTTTTGATATCAACGAGAGATAATTATATTATCAG</left_flank>
        <right_flank>AAATTTAAGACAATTTGAAACAGCAAAAAAAACCATTTTACAAAAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTGAAAATTCAATTTGAGCTCTTTGAGCTCAATTATTTATGTTCCTGTAAGAGATACCATAAACCTGTCAACTGATAAAACATTTATCTTTCTATCTGCATTATTATTAGTTGACCTTTTTATGATATCTCTTACAGTAACCGAGATAAATGAGCTCAAAGCAAATGTATCGTGAAATCAGTACCAGCAGGACCTTTACTTTCATTTTTCAGTTGACCACTTTTTGATACATTCTACAGTAACCGAGATATAAGAGCTCAACGAGCACGAGCTTCAATTTTTTAAAGGTTATTCTAAAAATGAAGACTATCAAACCAACAGAGATTAATGTGTTTTCTGAGAATTTCAATAAAGTTGAAACAGCAAAAAATTTGATATCGGAAAGGATTCAAAAAAATTTGAAAGTCAAAAGATATATTTTGCCTGAAAATTTCAAATTTTCTATAATAACTTCTGAATAAAGTTTTGATATCAACGAGAGATAATTATATTATCAGAAAATTTAAGACAATTTGAAACAGCAAAAAAAACCATTTTACAAAAAAAAATTACCCAAAAATTTCAGATTTTTCAATTTTTTTCTTTTTCGAATTTTGAAATTAAAATTTGGAAAACTAAAAAACCCCTTTTTTCTGAACATTTCAGATTGAAAAACTATTCTGGAAATGAGAAAAAATCTTGAATTCACCGATAGAAAATTATACTTTTCGAAAATTCTAGAAATTTTGAAATAGAAAAAAAAATTTTCTGAAATTTTCAGATTTTTTTGGATTACTGGAACCAAATAATTTTTTCCGGATTAGAACAAAGTATAATTTTTGAAAAAATGTGAAACAGGAAACTGAAAAATTTTGAAAACGCTCTATTTCTTAACATTAAACATTTCCATTTTCCTGAATACGGTACTAATACCTGCCTACTTAATTCCTTCCCTTTTGCCTTATCTTTCTTATCAGTGATAGCAATTTCAAGGTGCATACAATCATTCAATTTACGAC</canonical>
            <polymorphic>TCTTGAAAATTCAATTTGAGCTCTTTGAGCTCAATTATTTATGTTCCTGTAAGAGATACCATAAACCTGTCAACTGATAAAACATTTATCTTTCTATCTGCATTATTATTAGTTGACCTTTTTATGATATCTCTTACAGTAACCGAGATAAATGAGCTCAAAGCAAATGTATCGTGAAATCAGTACCAGCAGGACCTTTACTTTCATTTTTCAGTTGACCACTTTTTGATACATTCTACAGTAACCGAGATATAAGAGCTCAACGAGCACGAGCTTCAATTTTTTAAAGGTTATTCTAAAAATGAAGACTATCAAACCAACAGAGATTAATGTGTTTTCTGAGAATTTCAATAAAGTTGAAACAGCAAAAAATTTGATATCGGAAAGGATTCAAAAAAATTTGAAAGTCAAAAGATATATTTTGCCTGAAAATTTCAAATTTTCTATAATAACTTCTGAATAAAGTTTTGATATCAACGAGAGATAATTATATTATCAGWAAATTTAAGACAATTTGAAACAGCAAAAAAAACCATTTTACAAAAAAAAATTACCCAAAAATTTCAGATTTTTCAATTTTTTTCTTTTTCGAATTTTGAAATTAAAATTTGGAAAACTAAAAAACCCCTTTTTTCTGAACATTTCAGATTGAAAAACTATTCTGGAAATGAGAAAAAATCTTGAATTCACCGATAGAAAATTATACTTTTCGAAAATTCTAGAAATTTTGAAATAGAAAAAAAAATTTTCTGAAATTTTCAGATTTTTTTGGATTACTGGAACCAAATAATTTTTTCCGGATTAGAACAAAGTATAATTTTTGAAAAAATGTGAAACAGGAAACTGAAAAATTTTGAAAACGCTCTATTTCTTAACATTAAACATTTCCATTTTCCTGAATACGGTACTAATACCTGCCTACTTAATTCCTTCCCTTTTGCCTTATCTTTCTTATCAGTGATAGCAATTTCAAGGTGCATACAATCATTCAATTTACGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>340 239 105 75 70 68 42 41 10 10</canonical_bands>
                <polymorphic_bands>340 239 109 105 75 70 42 10 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGAGATTAATGTGTTTTCTGAG</pcr_primer_p1>
		<pcr_primer_p2>ATCTGAAATTTTTGGGTAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACAGAGATTAATGTGTTTTCTGAGAATTTCAATAAAGTTGAAACAGCAAAAAATTTGATATCGGAAAGGATTCAAAAAAATTTGAAAGTCAAAAGATATATTTTGCCTGAAAATTTCAAATTTTCTATAATAACTTCTGAATAAAGTTTTGATATCAACGAGAGATAATTATATTATCAGAAAATTTAAGACAATTTGAAACAGCAAAAAAAACCATTTTACAAAAAAAAATTACCCAAAAATTTCAGAT</canonical_amplicon>
		<polymorphic_amplicon>ACAGAGATTAATGTGTTTTCTGAGAATTTCAATAAAGTTGAAACAGCAAAAAATTTGATATCGGAAAGGATTCAAAAAAATTTGAAAGTCAAAAGATATATTTTGCCTGAAAATTTCAAATTTTCTATAATAACTTCTGAATAAAGTTTTGATATCAACGAGAGATAATTATATTATCAGWAAATTTAAGACAATTTGAAACAGCAAAAAAAACCATTTTACAAAAAAAAATTACCCAAAAATTTCAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28713</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>175796</contig_pos>
        <strand>+</strand>
        <context>TATCAGWAAA[A/C]TTAAGACAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCTGAATAAAGTTTTGATATCAACGAGAGATAATTATATTATCAGAAAA</left_flank>
        <right_flank>TTAAGACAATTTGAAACAGCAAAAAAAACCATTTTACAAAAAAAAATTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAATTCAATTTGAGCTCTTTGAGCTCAATTATTTATGTTCCTGTAAGAGATACCATAAACCTGTCAACTGATAAAACATTTATCTTTCTATCTGCATTATTATTAGTTGACCTTTTTATGATATCTCTTACAGTAACCGAGATAAATGAGCTCAAAGCAAATGTATCGTGAAATCAGTACCAGCAGGACCTTTACTTTCATTTTTCAGTTGACCACTTTTTGATACATTCTACAGTAACCGAGATATAAGAGCTCAACGAGCACGAGCTTCAATTTTTTAAAGGTTATTCTAAAAATGAAGACTATCAAACCAACAGAGATTAATGTGTTTTCTGAGAATTTCAATAAAGTTGAAACAGCAAAAAATTTGATATCGGAAAGGATTCAAAAAAATTTGAAAGTCAAAAGATATATTTTGCCTGAAAATTTCAAATTTTCTATAATAACTTCTGAATAAAGTTTTGATATCAACGAGAGATAATTATATTATCAGAAAATTTAAGACAATTTGAAACAGCAAAAAAAACCATTTTACAAAAAAAAATTACCCAAAAATTTCAGATTTTTCAATTTTTTTCTTTTTCGAATTTTGAAATTAAAATTTGGAAAACTAAAAAACCCCTTTTTTCTGAACATTTCAGATTGAAAAACTATTCTGGAAATGAGAAAAAATCTTGAATTCACCGATAGAAAATTATACTTTTCGAAAATTCTAGAAATTTTGAAATAGAAAAAAAAATTTTCTGAAATTTTCAGATTTTTTTGGATTACTGGAACCAAATAATTTTTTCCGGATTAGAACAAAGTATAATTTTTGAAAAAATGTGAAACAGGAAACTGAAAAATTTTGAAAACGCTCTATTTCTTAACATTAAACATTTCCATTTTCCTGAATACGGTACTAATACCTGCCTACTTAATTCCTTCCCTTTTGCCTTATCTTTCTTATCAGTGATAGCAATTTCAAGGTGCATACAATCATTCAATTTACGACTTTC</canonical>
            <polymorphic>GAAAATTCAATTTGAGCTCTTTGAGCTCAATTATTTATGTTCCTGTAAGAGATACCATAAACCTGTCAACTGATAAAACATTTATCTTTCTATCTGCATTATTATTAGTTGACCTTTTTATGATATCTCTTACAGTAACCGAGATAAATGAGCTCAAAGCAAATGTATCGTGAAATCAGTACCAGCAGGACCTTTACTTTCATTTTTCAGTTGACCACTTTTTGATACATTCTACAGTAACCGAGATATAAGAGCTCAACGAGCACGAGCTTCAATTTTTTAAAGGTTATTCTAAAAATGAAGACTATCAAACCAACAGAGATTAATGTGTTTTCTGAGAATTTCAATAAAGTTGAAACAGCAAAAAATTTGATATCGGAAAGGATTCAAAAAAATTTGAAAGTCAAAAGATATATTTTGCCTGAAAATTTCAAATTTTCTATAATAACTTCTGAATAAAGTTTTGATATCAACGAGAGATAATTATATTATCAGAAAAMTTAAGACAATTTGAAACAGCAAAAAAAACCATTTTACAAAAAAAAATTACCCAAAAATTTCAGATTTTTCAATTTTTTTCTTTTTCGAATTTTGAAATTAAAATTTGGAAAACTAAAAAACCCCTTTTTTCTGAACATTTCAGATTGAAAAACTATTCTGGAAATGAGAAAAAATCTTGAATTCACCGATAGAAAATTATACTTTTCGAAAATTCTAGAAATTTTGAAATAGAAAAAAAAATTTTCTGAAATTTTCAGATTTTTTTGGATTACTGGAACCAAATAATTTTTTCCGGATTAGAACAAAGTATAATTTTTGAAAAAATGTGAAACAGGAAACTGAAAAATTTTGAAAACGCTCTATTTCTTAACATTAAACATTTCCATTTTCCTGAATACGGTACTAATACCTGCCTACTTAATTCCTTCCCTTTTGCCTTATCTTTCTTATCAGTGATAGCAATTTCAAGGTGCATACAATCATTCAATTTACGACTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>336 155 96 78 64 58 33 32 31 27 27 20 14 10 9 7 3</canonical_bands>
                <polymorphic_bands>336 155 122 96 78 33 32 31 27 27 20 14 10 9 7 3</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>245 78 75 66 48 41 37 35 34 33 27 27 27 25 20 20 17 16 16 15 15 14 11 10 10 9 8 7 6 5 3</canonical_bands>
                <polymorphic_bands>245 78 75 66 48 41 37 35 34 33 27 27 27 26 25 20 20 17 16 15 15 14 11 10 9 8 7 6 5 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGAGATTAATGTGTTTTCTGAG</pcr_primer_p1>
		<pcr_primer_p2>ATCTGAAATTTTTGGGTAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACAGAGATTAATGTGTTTTCTGAGAATTTCAATAAAGTTGAAACAGCAAAAAATTTGATATCGGAAAGGATTCAAAAAAATTTGAAAGTCAAAAGATATATTTTGCCTGAAAATTTCAAATTTTCTATAATAACTTCTGAATAAAGTTTTGATATCAACGAGAGATAATTATATTATCAGAAAATTTAAGACAATTTGAAACAGCAAAAAAAACCATTTTACAAAAAAAAATTACCCAAAAATTTCAGAT</canonical_amplicon>
		<polymorphic_amplicon>ACAGAGATTAATGTGTTTTCTGAGAATTTCAATAAAGTTGAAACAGCAAAAAATTTGATATCGGAAAGGATTCAAAAAAATTTGAAAGTCAAAAGATATATTTTGCCTGAAAATTTCAAATTTTCTATAATAACTTCTGAATAAAGTTTTGATATCAACGAGAGATAATTATATTATCAGAAAAMTTAAGACAATTTGAAACAGCAAAAAAAACCATTTTACAAAAAAAAATTACCCAAAAATTTCAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28714</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>175816</contig_pos>
        <strand>+</strand>
        <context>TTTGAAACAG[A/C]AAAAAAAACC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCAACGAGAGATAATTATATTATCAGAAAATTTAAGACAATTTGAAACAG</left_flank>
        <right_flank>AAAAAAAACCATTTTACAAAAAAAAATTACCCAAAAATTTCAGATTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAGCTCAATTATTTATGTTCCTGTAAGAGATACCATAAACCTGTCAACTGATAAAACATTTATCTTTCTATCTGCATTATTATTAGTTGACCTTTTTATGATATCTCTTACAGTAACCGAGATAAATGAGCTCAAAGCAAATGTATCGTGAAATCAGTACCAGCAGGACCTTTACTTTCATTTTTCAGTTGACCACTTTTTGATACATTCTACAGTAACCGAGATATAAGAGCTCAACGAGCACGAGCTTCAATTTTTTAAAGGTTATTCTAAAAATGAAGACTATCAAACCAACAGAGATTAATGTGTTTTCTGAGAATTTCAATAAAGTTGAAACAGCAAAAAATTTGATATCGGAAAGGATTCAAAAAAATTTGAAAGTCAAAAGATATATTTTGCCTGAAAATTTCAAATTTTCTATAATAACTTCTGAATAAAGTTTTGATATCAACGAGAGATAATTATATTATCAGAAAATTTAAGACAATTTGAAACAGCAAAAAAAACCATTTTACAAAAAAAAATTACCCAAAAATTTCAGATTTTTCAATTTTTTTCTTTTTCGAATTTTGAAATTAAAATTTGGAAAACTAAAAAACCCCTTTTTTCTGAACATTTCAGATTGAAAAACTATTCTGGAAATGAGAAAAAATCTTGAATTCACCGATAGAAAATTATACTTTTCGAAAATTCTAGAAATTTTGAAATAGAAAAAAAAATTTTCTGAAATTTTCAGATTTTTTTGGATTACTGGAACCAAATAATTTTTTCCGGATTAGAACAAAGTATAATTTTTGAAAAAATGTGAAACAGGAAACTGAAAAATTTTGAAAACGCTCTATTTCTTAACATTAAACATTTCCATTTTCCTGAATACGGTACTAATACCTGCCTACTTAATTCCTTCCCTTTTGCCTTATCTTTCTTATCAGTGATAGCAATTTCAAGGTGCATACAATCATTCAATTTACGACTTTCTTATATTTGCTATGGAGTAG</canonical>
            <polymorphic>TTGAGCTCAATTATTTATGTTCCTGTAAGAGATACCATAAACCTGTCAACTGATAAAACATTTATCTTTCTATCTGCATTATTATTAGTTGACCTTTTTATGATATCTCTTACAGTAACCGAGATAAATGAGCTCAAAGCAAATGTATCGTGAAATCAGTACCAGCAGGACCTTTACTTTCATTTTTCAGTTGACCACTTTTTGATACATTCTACAGTAACCGAGATATAAGAGCTCAACGAGCACGAGCTTCAATTTTTTAAAGGTTATTCTAAAAATGAAGACTATCAAACCAACAGAGATTAATGTGTTTTCTGAGAATTTCAATAAAGTTGAAACAGCAAAAAATTTGATATCGGAAAGGATTCAAAAAAATTTGAAAGTCAAAAGATATATTTTGCCTGAAAATTTCAAATTTTCTATAATAACTTCTGAATAAAGTTTTGATATCAACGAGAGATAATTATATTATCAGAAAATTTAAGACAATTTGAAACAGMAAAAAAAACCATTTTACAAAAAAAAATTACCCAAAAATTTCAGATTTTTCAATTTTTTTCTTTTTCGAATTTTGAAATTAAAATTTGGAAAACTAAAAAACCCCTTTTTTCTGAACATTTCAGATTGAAAAACTATTCTGGAAATGAGAAAAAATCTTGAATTCACCGATAGAAAATTATACTTTTCGAAAATTCTAGAAATTTTGAAATAGAAAAAAAAATTTTCTGAAATTTTCAGATTTTTTTGGATTACTGGAACCAAATAATTTTTTCCGGATTAGAACAAAGTATAATTTTTGAAAAAATGTGAAACAGGAAACTGAAAAATTTTGAAAACGCTCTATTTCTTAACATTAAACATTTCCATTTTCCTGAATACGGTACTAATACCTGCCTACTTAATTCCTTCCCTTTTGCCTTATCTTTCTTATCAGTGATAGCAATTTCAAGGTGCATACAATCATTCAATTTACGACTTTCTTATATTTGCTATGGAGTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATATCGGAAAGGATTCAA</pcr_primer_p1>
		<pcr_primer_p2>TATCGGTGAATTCAAGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>TGATATCGGAAAGGATTCAAAAAAATTTGAAAGTCAAAAGATATATTTTGCCTGAAAATTTCAAATTTTCTATAATAACTTCTGAATAAAGTTTTGATATCAACGAGAGATAATTATATTATCAGAAAATTTAAGACAATTTGAAACAGCAAAAAAAACCATTTTACAAAAAAAAATTACCCAAAAATTTCAGATTTTTCAATTTTTTTCTTTTTCGAATTTTGAAATTAAAATTTGGAAAACTAAAAAACCCCTTTTTTCTGAACATTTCAGATTGAAAAACTATTCTGGAAATGAGAAAAAATCTTGAATTCACCGATA</canonical_amplicon>
		<polymorphic_amplicon>TGATATCGGAAAGGATTCAAAAAAATTTGAAAGTCAAAAGATATATTTTGCCTGAAAATTTCAAATTTTCTATAATAACTTCTGAATAAAGTTTTGATATCAACGAGAGATAATTATATTATCAGAAAATTTAAGACAATTTGAAACAGMAAAAAAAACCATTTTACAAAAAAAAATTACCCAAAAATTTCAGATTTTTCAATTTTTTTCTTTTTCGAATTTTGAAATTAAAATTTGGAAAACTAAAAAACCCCTTTTTTCTGAACATTTCAGATTGAAAAACTATTCTGGAAATGAGAAAAAATCTTGAATTCACCGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28715</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>175929</contig_pos>
        <strand>+</strand>
        <context>CCTTTTTTCT[A/G]AACATTTCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCGAATTTTGAAATTAAAATTTGGAAAACTAAAAAACCCCTTTTTTCT</left_flank>
        <right_flank>AACATTTCAGATTGAAAAACTATTCTGGAAATGAGAAAAAATCTTGAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTAACCGAGATAAATGAGCTCAAAGCAAATGTATCGTGAAATCAGTACCAGCAGGACCTTTACTTTCATTTTTCAGTTGACCACTTTTTGATACATTCTACAGTAACCGAGATATAAGAGCTCAACGAGCACGAGCTTCAATTTTTTAAAGGTTATTCTAAAAATGAAGACTATCAAACCAACAGAGATTAATGTGTTTTCTGAGAATTTCAATAAAGTTGAAACAGCAAAAAATTTGATATCGGAAAGGATTCAAAAAAATTTGAAAGTCAAAAGATATATTTTGCCTGAAAATTTCAAATTTTCTATAATAACTTCTGAATAAAGTTTTGATATCAACGAGAGATAATTATATTATCAGAAAATTTAAGACAATTTGAAACAGCAAAAAAAACCATTTTACAAAAAAAAATTACCCAAAAATTTCAGATTTTTCAATTTTTTTCTTTTTCGAATTTTGAAATTAAAATTTGGAAAACTAAAAAACCCCTTTTTTCTGAACATTTCAGATTGAAAAACTATTCTGGAAATGAGAAAAAATCTTGAATTCACCGATAGAAAATTATACTTTTCGAAAATTCTAGAAATTTTGAAATAGAAAAAAAAATTTTCTGAAATTTTCAGATTTTTTTGGATTACTGGAACCAAATAATTTTTTCCGGATTAGAACAAAGTATAATTTTTGAAAAAATGTGAAACAGGAAACTGAAAAATTTTGAAAACGCTCTATTTCTTAACATTAAACATTTCCATTTTCCTGAATACGGTACTAATACCTGCCTACTTAATTCCTTCCCTTTTGCCTTATCTTTCTTATCAGTGATAGCAATTTCAAGGTGCATACAATCATTCAATTTACGACTTTCTTATATTTGCTATGGAGTAGGGAGTACTAAAATATGATCATTTGATCTAGAAAATTCAAATTGAAACTTTTAACTTGTTACAAACTTTTTGAAATTTTGGGACACTTTGAGCTCAATTATCTCGGCTCCTATA</canonical>
            <polymorphic>AGTAACCGAGATAAATGAGCTCAAAGCAAATGTATCGTGAAATCAGTACCAGCAGGACCTTTACTTTCATTTTTCAGTTGACCACTTTTTGATACATTCTACAGTAACCGAGATATAAGAGCTCAACGAGCACGAGCTTCAATTTTTTAAAGGTTATTCTAAAAATGAAGACTATCAAACCAACAGAGATTAATGTGTTTTCTGAGAATTTCAATAAAGTTGAAACAGCAAAAAATTTGATATCGGAAAGGATTCAAAAAAATTTGAAAGTCAAAAGATATATTTTGCCTGAAAATTTCAAATTTTCTATAATAACTTCTGAATAAAGTTTTGATATCAACGAGAGATAATTATATTATCAGAAAATTTAAGACAATTTGAAACAGCAAAAAAAACCATTTTACAAAAAAAAATTACCCAAAAATTTCAGATTTTTCAATTTTTTTCTTTTTCGAATTTTGAAATTAAAATTTGGAAAACTAAAAAACCCCTTTTTTCTRAACATTTCAGATTGAAAAACTATTCTGGAAATGAGAAAAAATCTTGAATTCACCGATAGAAAATTATACTTTTCGAAAATTCTAGAAATTTTGAAATAGAAAAAAAAATTTTCTGAAATTTTCAGATTTTTTTGGATTACTGGAACCAAATAATTTTTTCCGGATTAGAACAAAGTATAATTTTTGAAAAAATGTGAAACAGGAAACTGAAAAATTTTGAAAACGCTCTATTTCTTAACATTAAACATTTCCATTTTCCTGAATACGGTACTAATACCTGCCTACTTAATTCCTTCCCTTTTGCCTTATCTTTCTTATCAGTGATAGCAATTTCAAGGTGCATACAATCATTCAATTTACGACTTTCTTATATTTGCTATGGAGTAGGGAGTACTAAAATATGATCATTTGATCTAGAAAATTCAAATTGAAACTTTTAACTTGTTACAAACTTTTTGAAATTTTGGGACACTTTGAGCTCAATTATCTCGGCTCCTATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>376 203 105 75 70 68 42 41 10 10</canonical_bands>
                <polymorphic_bands>376 203 105 80 75 68 42 41 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTACCCAAAAATTTCAGAT</pcr_primer_p1>
		<pcr_primer_p2>TGGTTCCAGTAATCCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AAAATTACCCAAAAATTTCAGATTTTTCAATTTTTTTCTTTTTCGAATTTTGAAATTAAAATTTGGAAAACTAAAAAACCCCTTTTTTCTGAACATTTCAGATTGAAAAACTATTCTGGAAATGAGAAAAAATCTTGAATTCACCGATAGAAAATTATACTTTTCGAAAATTCTAGAAATTTTGAAATAGAAAAAAAAATTTTCTGAAATTTTCAGATTTTTTTGGATTACTGGAACCA</canonical_amplicon>
		<polymorphic_amplicon>AAAATTACCCAAAAATTTCAGATTTTTCAATTTTTTTCTTTTTCGAATTTTGAAATTAAAATTTGGAAAACTAAAAAACCCCTTTTTTCTRAACATTTCAGATTGAAAAACTATTCTGGAAATGAGAAAAAATCTTGAATTCACCGATAGAAAATTATACTTTTCGAAAATTCTAGAAATTTTGAAATAGAAAAAAAAATTTTCTGAAATTTTCAGATTTTTTTGGATTACTGGAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28716</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>175949</contig_pos>
        <strand>+</strand>
        <context>GATTGAAAAA[A/C]TATTCTGGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTGGAAAACTAAAAAACCCCTTTTTTCTGAACATTTCAGATTGAAAAA</left_flank>
        <right_flank>TATTCTGGAAATGAGAAAAAATCTTGAATTCACCGATAGAAAATTATACT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAGCAAATGTATCGTGAAATCAGTACCAGCAGGACCTTTACTTTCATTTTTCAGTTGACCACTTTTTGATACATTCTACAGTAACCGAGATATAAGAGCTCAACGAGCACGAGCTTCAATTTTTTAAAGGTTATTCTAAAAATGAAGACTATCAAACCAACAGAGATTAATGTGTTTTCTGAGAATTTCAATAAAGTTGAAACAGCAAAAAATTTGATATCGGAAAGGATTCAAAAAAATTTGAAAGTCAAAAGATATATTTTGCCTGAAAATTTCAAATTTTCTATAATAACTTCTGAATAAAGTTTTGATATCAACGAGAGATAATTATATTATCAGAAAATTTAAGACAATTTGAAACAGCAAAAAAAACCATTTTACAAAAAAAAATTACCCAAAAATTTCAGATTTTTCAATTTTTTTCTTTTTCGAATTTTGAAATTAAAATTTGGAAAACTAAAAAACCCCTTTTTTCTGAACATTTCAGATTGAAAAACTATTCTGGAAATGAGAAAAAATCTTGAATTCACCGATAGAAAATTATACTTTTCGAAAATTCTAGAAATTTTGAAATAGAAAAAAAAATTTTCTGAAATTTTCAGATTTTTTTGGATTACTGGAACCAAATAATTTTTTCCGGATTAGAACAAAGTATAATTTTTGAAAAAATGTGAAACAGGAAACTGAAAAATTTTGAAAACGCTCTATTTCTTAACATTAAACATTTCCATTTTCCTGAATACGGTACTAATACCTGCCTACTTAATTCCTTCCCTTTTGCCTTATCTTTCTTATCAGTGATAGCAATTTCAAGGTGCATACAATCATTCAATTTACGACTTTCTTATATTTGCTATGGAGTAGGGAGTACTAAAATATGATCATTTGATCTAGAAAATTCAAATTGAAACTTTTAACTTGTTACAAACTTTTTGAAATTTTGGGACACTTTGAGCTCAATTATCTCGGCTCCTATAAAAGATATCAAAAAGTAGTT</canonical>
            <polymorphic>TCAAAGCAAATGTATCGTGAAATCAGTACCAGCAGGACCTTTACTTTCATTTTTCAGTTGACCACTTTTTGATACATTCTACAGTAACCGAGATATAAGAGCTCAACGAGCACGAGCTTCAATTTTTTAAAGGTTATTCTAAAAATGAAGACTATCAAACCAACAGAGATTAATGTGTTTTCTGAGAATTTCAATAAAGTTGAAACAGCAAAAAATTTGATATCGGAAAGGATTCAAAAAAATTTGAAAGTCAAAAGATATATTTTGCCTGAAAATTTCAAATTTTCTATAATAACTTCTGAATAAAGTTTTGATATCAACGAGAGATAATTATATTATCAGAAAATTTAAGACAATTTGAAACAGCAAAAAAAACCATTTTACAAAAAAAAATTACCCAAAAATTTCAGATTTTTCAATTTTTTTCTTTTTCGAATTTTGAAATTAAAATTTGGAAAACTAAAAAACCCCTTTTTTCTGAACATTTCAGATTGAAAAAMTATTCTGGAAATGAGAAAAAATCTTGAATTCACCGATAGAAAATTATACTTTTCGAAAATTCTAGAAATTTTGAAATAGAAAAAAAAATTTTCTGAAATTTTCAGATTTTTTTGGATTACTGGAACCAAATAATTTTTTCCGGATTAGAACAAAGTATAATTTTTGAAAAAATGTGAAACAGGAAACTGAAAAATTTTGAAAACGCTCTATTTCTTAACATTAAACATTTCCATTTTCCTGAATACGGTACTAATACCTGCCTACTTAATTCCTTCCCTTTTGCCTTATCTTTCTTATCAGTGATAGCAATTTCAAGGTGCATACAATCATTCAATTTACGACTTTCTTATATTTGCTATGGAGTAGGGAGTACTAAAATATGATCATTTGATCTAGAAAATTCAAATTGAAACTTTTAACTTGTTACAAACTTTTTGAAATTTTGGGACACTTTGAGCTCAATTATCTCGGCTCCTATAAAAGATATCAAAAAGTAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTACCCAAAAATTTCAGAT</pcr_primer_p1>
		<pcr_primer_p2>TGGTTCCAGTAATCCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AAAATTACCCAAAAATTTCAGATTTTTCAATTTTTTTCTTTTTCGAATTTTGAAATTAAAATTTGGAAAACTAAAAAACCCCTTTTTTCTGAACATTTCAGATTGAAAAACTATTCTGGAAATGAGAAAAAATCTTGAATTCACCGATAGAAAATTATACTTTTCGAAAATTCTAGAAATTTTGAAATAGAAAAAAAAATTTTCTGAAATTTTCAGATTTTTTTGGATTACTGGAACCA</canonical_amplicon>
		<polymorphic_amplicon>AAAATTACCCAAAAATTTCAGATTTTTCAATTTTTTTCTTTTTCGAATTTTGAAATTAAAATTTGGAAAACTAAAAAACCCCTTTTTTCTGAACATTTCAGATTGAAAAAMTATTCTGGAAATGAGAAAAAATCTTGAATTCACCGATAGAAAATTATACTTTTCGAAAATTCTAGAAATTTTGAAATAGAAAAAAAAATTTTCTGAAATTTTCAGATTTTTTTGGATTACTGGAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28717</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>176029</contig_pos>
        <strand>+</strand>
        <context>TTTGAAATAG[A/T]AAAAAAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCACCGATAGAAAATTATACTTTTCGAAAATTCTAGAAATTTTGAAATAG</left_flank>
        <right_flank>AAAAAAAATTTTCTGAAATTTTCAGATTTTTTTGGATTACTGGAACCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGTAACCGAGATATAAGAGCTCAACGAGCACGAGCTTCAATTTTTTAAAGGTTATTCTAAAAATGAAGACTATCAAACCAACAGAGATTAATGTGTTTTCTGAGAATTTCAATAAAGTTGAAACAGCAAAAAATTTGATATCGGAAAGGATTCAAAAAAATTTGAAAGTCAAAAGATATATTTTGCCTGAAAATTTCAAATTTTCTATAATAACTTCTGAATAAAGTTTTGATATCAACGAGAGATAATTATATTATCAGAAAATTTAAGACAATTTGAAACAGCAAAAAAAACCATTTTACAAAAAAAAATTACCCAAAAATTTCAGATTTTTCAATTTTTTTCTTTTTCGAATTTTGAAATTAAAATTTGGAAAACTAAAAAACCCCTTTTTTCTGAACATTTCAGATTGAAAAACTATTCTGGAAATGAGAAAAAATCTTGAATTCACCGATAGAAAATTATACTTTTCGAAAATTCTAGAAATTTTGAAATAGAAAAAAAAATTTTCTGAAATTTTCAGATTTTTTTGGATTACTGGAACCAAATAATTTTTTCCGGATTAGAACAAAGTATAATTTTTGAAAAAATGTGAAACAGGAAACTGAAAAATTTTGAAAACGCTCTATTTCTTAACATTAAACATTTCCATTTTCCTGAATACGGTACTAATACCTGCCTACTTAATTCCTTCCCTTTTGCCTTATCTTTCTTATCAGTGATAGCAATTTCAAGGTGCATACAATCATTCAATTTACGACTTTCTTATATTTGCTATGGAGTAGGGAGTACTAAAATATGATCATTTGATCTAGAAAATTCAAATTGAAACTTTTAACTTGTTACAAACTTTTTGAAATTTTGGGACACTTTGAGCTCAATTATCTCGGCTCCTATAAAAGATATCAAAAAGTAGTTAGCTGGTAAAATGTTGGTGATAATATGATGAAAATTTTATTAGTTGACTACTTTTTGGCATCTTTTACAGTAACCGAGAT</canonical>
            <polymorphic>ACAGTAACCGAGATATAAGAGCTCAACGAGCACGAGCTTCAATTTTTTAAAGGTTATTCTAAAAATGAAGACTATCAAACCAACAGAGATTAATGTGTTTTCTGAGAATTTCAATAAAGTTGAAACAGCAAAAAATTTGATATCGGAAAGGATTCAAAAAAATTTGAAAGTCAAAAGATATATTTTGCCTGAAAATTTCAAATTTTCTATAATAACTTCTGAATAAAGTTTTGATATCAACGAGAGATAATTATATTATCAGAAAATTTAAGACAATTTGAAACAGCAAAAAAAACCATTTTACAAAAAAAAATTACCCAAAAATTTCAGATTTTTCAATTTTTTTCTTTTTCGAATTTTGAAATTAAAATTTGGAAAACTAAAAAACCCCTTTTTTCTGAACATTTCAGATTGAAAAACTATTCTGGAAATGAGAAAAAATCTTGAATTCACCGATAGAAAATTATACTTTTCGAAAATTCTAGAAATTTTGAAATAGWAAAAAAAATTTTCTGAAATTTTCAGATTTTTTTGGATTACTGGAACCAAATAATTTTTTCCGGATTAGAACAAAGTATAATTTTTGAAAAAATGTGAAACAGGAAACTGAAAAATTTTGAAAACGCTCTATTTCTTAACATTAAACATTTCCATTTTCCTGAATACGGTACTAATACCTGCCTACTTAATTCCTTCCCTTTTGCCTTATCTTTCTTATCAGTGATAGCAATTTCAAGGTGCATACAATCATTCAATTTACGACTTTCTTATATTTGCTATGGAGTAGGGAGTACTAAAATATGATCATTTGATCTAGAAAATTCAAATTGAAACTTTTAACTTGTTACAAACTTTTTGAAATTTTGGGACACTTTGAGCTCAATTATCTCGGCTCCTATAAAAGATATCAAAAAGTAGTTAGCTGGTAAAATGTTGGTGATAATATGATGAAAATTTTATTAGTTGACTACTTTTTGGCATCTTTTACAGTAACCGAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAATTCACCGATAGAAAATTA</pcr_primer_p1>
		<pcr_primer_p2>AAGGAATTAAGTAGGCAGGTATT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTGAATTCACCGATAGAAAATTATACTTTTCGAAAATTCTAGAAATTTTGAAATAGAAAAAAAAATTTTCTGAAATTTTCAGATTTTTTTGGATTACTGGAACCAAATAATTTTTTCCGGATTAGAACAAAGTATAATTTTTGAAAAAATGTGAAACAGGAAACTGAAAAATTTTGAAAACGCTCTATTTCTTAACATTAAACATTTCCATTTTCCTGAATACGGTACTAATACCTGCCTACTTAATTCCTT</canonical_amplicon>
		<polymorphic_amplicon>TTGAATTCACCGATAGAAAATTATACTTTTCGAAAATTCTAGAAATTTTGAAATAGWAAAAAAAATTTTCTGAAATTTTCAGATTTTTTTGGATTACTGGAACCAAATAATTTTTTCCGGATTAGAACAAAGTATAATTTTTGAAAAAATGTGAAACAGGAAACTGAAAAATTTTGAAAACGCTCTATTTCTTAACATTAAACATTTCCATTTTCCTGAATACGGTACTAATACCTGCCTACTTAATTCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28718</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>176115</contig_pos>
        <strand>+</strand>
        <context>TATAATTTTT[C/G]AAAAAATGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTACTGGAACCAAATAATTTTTTCCGGATTAGAACAAAGTATAATTTTT</left_flank>
        <right_flank>AAAAAATGTGAAACAGGAAACTGAAAAATTTTGAAAACGCTCTATTTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATTAATGTGTTTTCTGAGAATTTCAATAAAGTTGAAACAGCAAAAAATTTGATATCGGAAAGGATTCAAAAAAATTTGAAAGTCAAAAGATATATTTTGCCTGAAAATTTCAAATTTTCTATAATAACTTCTGAATAAAGTTTTGATATCAACGAGAGATAATTATATTATCAGAAAATTTAAGACAATTTGAAACAGCAAAAAAAACCATTTTACAAAAAAAAATTACCCAAAAATTTCAGATTTTTCAATTTTTTTCTTTTTCGAATTTTGAAATTAAAATTTGGAAAACTAAAAAACCCCTTTTTTCTGAACATTTCAGATTGAAAAACTATTCTGGAAATGAGAAAAAATCTTGAATTCACCGATAGAAAATTATACTTTTCGAAAATTCTAGAAATTTTGAAATAGAAAAAAAAATTTTCTGAAATTTTCAGATTTTTTTGGATTACTGGAACCAAATAATTTTTTCCGGATTAGAACAAAGTATAATTTTTGAAAAAATGTGAAACAGGAAACTGAAAAATTTTGAAAACGCTCTATTTCTTAACATTAAACATTTCCATTTTCCTGAATACGGTACTAATACCTGCCTACTTAATTCCTTCCCTTTTGCCTTATCTTTCTTATCAGTGATAGCAATTTCAAGGTGCATACAATCATTCAATTTACGACTTTCTTATATTTGCTATGGAGTAGGGAGTACTAAAATATGATCATTTGATCTAGAAAATTCAAATTGAAACTTTTAACTTGTTACAAACTTTTTGAAATTTTGGGACACTTTGAGCTCAATTATCTCGGCTCCTATAAAAGATATCAAAAAGTAGTTAGCTGGTAAAATGTTGGTGATAATATGATGAAAATTTTATTAGTTGACTACTTTTTGGCATCTTTTACAGTAACCGAGATAAATAAAGTGAACATACAGTAAAATCAGTAATATAAGGATATTTACTTTTTCAGCTCAATATCTCGGTTTCTATGAGTGATATCAA</canonical>
            <polymorphic>AGATTAATGTGTTTTCTGAGAATTTCAATAAAGTTGAAACAGCAAAAAATTTGATATCGGAAAGGATTCAAAAAAATTTGAAAGTCAAAAGATATATTTTGCCTGAAAATTTCAAATTTTCTATAATAACTTCTGAATAAAGTTTTGATATCAACGAGAGATAATTATATTATCAGAAAATTTAAGACAATTTGAAACAGCAAAAAAAACCATTTTACAAAAAAAAATTACCCAAAAATTTCAGATTTTTCAATTTTTTTCTTTTTCGAATTTTGAAATTAAAATTTGGAAAACTAAAAAACCCCTTTTTTCTGAACATTTCAGATTGAAAAACTATTCTGGAAATGAGAAAAAATCTTGAATTCACCGATAGAAAATTATACTTTTCGAAAATTCTAGAAATTTTGAAATAGAAAAAAAAATTTTCTGAAATTTTCAGATTTTTTTGGATTACTGGAACCAAATAATTTTTTCCGGATTAGAACAAAGTATAATTTTTSAAAAAATGTGAAACAGGAAACTGAAAAATTTTGAAAACGCTCTATTTCTTAACATTAAACATTTCCATTTTCCTGAATACGGTACTAATACCTGCCTACTTAATTCCTTCCCTTTTGCCTTATCTTTCTTATCAGTGATAGCAATTTCAAGGTGCATACAATCATTCAATTTACGACTTTCTTATATTTGCTATGGAGTAGGGAGTACTAAAATATGATCATTTGATCTAGAAAATTCAAATTGAAACTTTTAACTTGTTACAAACTTTTTGAAATTTTGGGACACTTTGAGCTCAATTATCTCGGCTCCTATAAAAGATATCAAAAAGTAGTTAGCTGGTAAAATGTTGGTGATAATATGATGAAAATTTTATTAGTTGACTACTTTTTGGCATCTTTTACAGTAACCGAGATAAATAAAGTGAACATACAGTAAAATCAGTAATATAAGGATATTTACTTTTTCAGCTCAATATCTCGGTTTCTATGAGTGATATCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAATTCACCGATAGAAAATTA</pcr_primer_p1>
		<pcr_primer_p2>AAGGAATTAAGTAGGCAGGTATT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTGAATTCACCGATAGAAAATTATACTTTTCGAAAATTCTAGAAATTTTGAAATAGAAAAAAAAATTTTCTGAAATTTTCAGATTTTTTTGGATTACTGGAACCAAATAATTTTTTCCGGATTAGAACAAAGTATAATTTTTGAAAAAATGTGAAACAGGAAACTGAAAAATTTTGAAAACGCTCTATTTCTTAACATTAAACATTTCCATTTTCCTGAATACGGTACTAATACCTGCCTACTTAATTCCTT</canonical_amplicon>
		<polymorphic_amplicon>TTGAATTCACCGATAGAAAATTATACTTTTCGAAAATTCTAGAAATTTTGAAATAGAAAAAAAAATTTTCTGAAATTTTCAGATTTTTTTGGATTACTGGAACCAAATAATTTTTTCCGGATTAGAACAAAGTATAATTTTTSAAAAAATGTGAAACAGGAAACTGAAAAATTTTGAAAACGCTCTATTTCTTAACATTAAACATTTCCATTTTCCTGAATACGGTACTAATACCTGCCTACTTAATTCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28719</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>177348</contig_pos>
        <strand>+</strand>
        <context>aaatttttat[C/T]atttaCACTT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCATTTTCACTTTTTTTGAAATTGCATGAAAAAAATTAAAAATTTTTAT</left_flank>
        <right_flank>ATTTACACTTTGTAATTATTGTATACTTACCAACTTACCTTTTATTCCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACGCCCAACCCACAGGTCATGGGCGCGCATACGCATAATGGATGGGCGACGGAGGACGCGCCGATGAATTGGGTACAGGGAAAGGACGCCGGTATGGGGCATATACGGGGCATATGGGGCACACCGCCGCCGCAAAGCATCTCCTCGCCTGGCTTGCTGGCACTCGATGAAATGAACTAAAACGTTGGTTGGGGGTTCCTAGAAGTATCAGTTAAGTTCTATTGTGATGTGATTTTGTTCAGGTCTTCCGATTTCGTACTTTTCCTTTATTATTCCATATTCTTTTATATTTTGAACGACATATTACTGATTTTTCGAAACTCAATATTTTGGTTTTGAAAAAGACTTATGGCAGTTTCCATCTAAATTTGATATGCAATCAAAAACAGATCAAAATGGGAAAAAATTCGCTAAAAATTGTTTTTTTTCATTTGTTCAAAAAATATGTCTCATTTTCACTTTTTTTGAAATTGCATGAAAAAAATTAAAAATTTTTATAATTTACACTTTGTAATTATTGTATACTTACCAACTTACCTTTTATTCCACCTGAAAATACGATTTTTACAATAATTACAAAGTGAAATCAAAAAATCTCAATATCACCTATTTTGGCGAAAAACATAGCAATTAACGAGTGAAAGACATGTTTTTGCAAGAATTCAGCGATTTTTTATTCTGCCATAATTCTTTTTCACAAAAAACATCGAAGGAATAATCGAAAAATCAGAAATGTAGGCTCGAATTGACAAAGTTGCCGGTGTGGATTTACGGTAAACAATGCGCGCATCCGGGATTTCGGAGTGTTGTAGTCGGCCTACCGTATCAGACCCATATCGCACACATCGCCCACCCACCTAGAATGCATCTAGGAGACGCGCGCATTCGGAACACTCGATTCAGCCGGACCTGTGACCTTTCGATCTGAAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGGAAGCGAAGGAGGGTGGATGGCGTATAGGAAAGGGA</canonical>
            <polymorphic>AACGCCCAACCCACAGGTCATGGGCGCGCATACGCATAATGGATGGGCGACGGAGGACGCGCCGATGAATTGGGTACAGGGAAAGGACGCCGGTATGGGGCATATACGGGGCATATGGGGCACACCGCCGCCGCAAAGCATCTCCTCGCCTGGCTTGCTGGCACTCGATGAAATGAACTAAAACGTTGGTTGGGGGTTCCTAGAAGTATCAGTTAAGTTCTATTGTGATGTGATTTTGTTCAGGTCTTCCGATTTCGTACTTTTCCTTTATTATTCCATATTCTTTTATATTTTGAACGACATATTACTGATTTTTCGAAACTCAATATTTTGGTTTTGAAAAAGACTTATGGCAGTTTCCATCTAAATTTGATATGCAATCAAAAACAGATCAAAATGGGAAAAAATTCGCTAAAAATTGTTTTTTTTCATTTGTTCAAAAAATATGTCTCATTTTCACTTTTTTTGAAATTGCATGAAAAAAATTAAAAATTTTTATYATTTACACTTTGTAATTATTGTATACTTACCAACTTACCTTTTATTCCACCTGAAAATACGATTTTTACAATAATTACAAAGTGAAATCAAAAAATCTCAATATCACCTATTTTGGCGAAAAACATAGCAATTAACGAGTGAAAGACATGTTTTTGCAAGAATTCAGCGATTTTTTATTCTGCCATAATTCTTTTTCACAAAAAACATCGAAGGAATAATCGAAAAATCAGAAATGTAGGCTCGAATTGACAAAGTTGCCGGTGTGGATTTACGGTAAACAATGCGCGCATCCGGGATTTCGGAGTGTTGTAGTCGGCCTACCGTATCAGACCCATATCGCACACATCGCCCACCCACCTAGAATGCATCTAGGAGACGCGCGCATTCGGAACACTCGATTCAGCCGGACCTGTGACCTTTCGATCTGAAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGGAAGCGAAGGAGGGTGGATGGCGTATAGGAAAGGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>299 256 67 59 58 57 53 39 31 26 14 14 11 9 7</canonical_bands>
                <polymorphic_bands>299 256 67 59 58 57 53 39 31 26 23 14 11 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGGTTTTGAAAAAGACTTATG</pcr_primer_p1>
		<pcr_primer_p2>TTGTAAAAATCGTATTTTCAGGT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTGGTTTTGAAAAAGACTTATGGCAGTTTCCATCTAAATTTGATATGCAATCAAAAACAGATCAAAATGGGAAAAAATTCGCTAAAAATTGTTTTTTTTCATTTGTTCAAAAAATATGTCTCATTTTCACTTTTTTTGAAATTGCATGAAAAAAATTAAAAATTTTTATAATTTACACTTTGTAATTATTGTATACTTACCAACTTACCTTTTATTCCACCTGAAAATACGATTTTTACAA</canonical_amplicon>
		<polymorphic_amplicon>TTTGGTTTTGAAAAAGACTTATGGCAGTTTCCATCTAAATTTGATATGCAATCAAAAACAGATCAAAATGGGAAAAAATTCGCTAAAAATTGTTTTTTTTCATTTGTTCAAAAAATATGTCTCATTTTCACTTTTTTTGAAATTGCATGAAAAAAATTAAAAATTTTTATYATTTACACTTTGTAATTATTGTATACTTACCAACTTACCTTTTATTCCACCTGAAAATACGATTTTTACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28720</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>177708</contig_pos>
        <strand>+</strand>
        <context>CCCACCCACC[C/T]AGAATSCATC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTAGTCGGCCTACCGTATCAGACCCATATCGCACACATCGCCCACCCACC</left_flank>
        <right_flank>AGAATGCATCTAGGAGACGCGCGCATTCGGAACACTCGATTCAGCCGGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCTAAATTTGATATGCAATCAAAAACAGATCAAAATGGGAAAAAATTCGCTAAAAATTGTTTTTTTTCATTTGTTCAAAAAATATGTCTCATTTTCACTTTTTTTGAAATTGCATGAAAAAAATTAAAAATTTTTATAATTTACACTTTGTAATTATTGTATACTTACCAACTTACCTTTTATTCCACCTGAAAATACGATTTTTACAATAATTACAAAGTGAAATCAAAAAATCTCAATATCACCTATTTTGGCGAAAAACATAGCAATTAACGAGTGAAAGACATGTTTTTGCAAGAATTCAGCGATTTTTTATTCTGCCATAATTCTTTTTCACAAAAAACATCGAAGGAATAATCGAAAAATCAGAAATGTAGGCTCGAATTGACAAAGTTGCCGGTGTGGATTTACGGTAAACAATGCGCGCATCCGGGATTTCGGAGTGTTGTAGTCGGCCTACCGTATCAGACCCATATCGCACACATCGCCCACCCACCTAGAATGCATCTAGGAGACGCGCGCATTCGGAACACTCGATTCAGCCGGACCTGTGACCTTTCGATCTGAAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGGAAGCGAAGGAGGGTGGATGGCGTATAGGAAAGGGAGGAGAGTCTACGAGCAAGTCTACGAAAACTACAGTAACCTGAATAAGCCTCAGCGAACTGATCGAAATAATCAATTGCTCCGTGATAAGACTCTCGACACAAATCGCTTTCTTTTAAGCTATCCTTGGTTTTCTTGATTCCAGAAACTTCATTAATATGGGTGAATGGATAGAAGGTGCGACTTGTATAGTAATTTTCAAAGCCTAAGCAACTTGGGTACTTTGTAAGGATTTGGAAGTACCAGTCGTCAATGTGGAGCGTCCGAAATTTTAGTTCAGTCTTGAATGGTTAAGTTTTATGAAGTTGAAAATGTTAATTTTGAATTCAGCGTTTTTTGAGCTTCAAAATGAGCCTATACAC</canonical>
            <polymorphic>CATCTAAATTTGATATGCAATCAAAAACAGATCAAAATGGGAAAAAATTCGCTAAAAATTGTTTTTTTTCATTTGTTCAAAAAATATGTCTCATTTTCACTTTTTTTGAAATTGCATGAAAAAAATTAAAAATTTTTATAATTTACACTTTGTAATTATTGTATACTTACCAACTTACCTTTTATTCCACCTGAAAATACGATTTTTACAATAATTACAAAGTGAAATCAAAAAATCTCAATATCACCTATTTTGGCGAAAAACATAGCAATTAACGAGTGAAAGACATGTTTTTGCAAGAATTCAGCGATTTTTTATTCTGCCATAATTCTTTTTCACAAAAAACATCGAAGGAATAATCGAAAAATCAGAAATGTAGGCTCGAATTGACAAAGTTGCCGGTGTGGATTTACGGTAAACAATGCGCGCATCCGGGATTTCGGAGTGTTGTAGTCGGCCTACCGTATCAGACCCATATCGCACACATCGCCCACCCACCYAGAATGCATCTAGGAGACGCGCGCATTCGGAACACTCGATTCAGCCGGACCTGTGACCTTTCGATCTGAAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGGAAGCGAAGGAGGGTGGATGGCGTATAGGAAAGGGAGGAGAGTCTACGAGCAAGTCTACGAAAACTACAGTAACCTGAATAAGCCTCAGCGAACTGATCGAAATAATCAATTGCTCCGTGATAAGACTCTCGACACAAATCGCTTTCTTTTAAGCTATCCTTGGTTTTCTTGATTCCAGAAACTTCATTAATATGGGTGAATGGATAGAAGGTGCGACTTGTATAGTAATTTTCAAAGCCTAAGCAACTTGGGTACTTTGTAAGGATTTGGAAGTACCAGTCGTCAATGTGGAGCGTCCGAAATTTTAGTTCAGTCTTGAATGGTTAAGTTTTATGAAGTTGAAAATGTTAATTTTGAATTCAGCGTTTTTTGAGCTTCAAAATGAGCCTATACAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 490 11</canonical_bands>
                <polymorphic_bands>510 490</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTTCGGAGTGTTGTAGTC</pcr_primer_p1>
		<pcr_primer_p2>TCAGGTTACTGTAGTTTTCGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGATTTCGGAGTGTTGTAGTCGGCCTACCGTATCAGACCCATATCGCACACATCGCCCACCCACCTAGAATGCATCTAGGAGACGCGCGCATTCGGAACACTCGATTCAGCCGGACCTGTGACCTTTCGATCTGAAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGGAAGCGAAGGAGGGTGGATGGCGTATAGGAAAGGGAGGAGAGTCTACGAGCAAGTCTACGAAAACTACAGTAACCTGA</canonical_amplicon>
		<polymorphic_amplicon>GGATTTCGGAGTGTTGTAGTCGGCCTACCGTATCAGACCCATATCGCACACATCGCCCACCCACCYAGAATGCATCTAGGAGACGCGCGCATTCGGAACACTCGATTCAGCCGGACCTGTGACCTTTCGATCTGAAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGGAAGCGAAGGAGGGTGGATGGCGTATAGGAAAGGGAGGAGAGTCTACGAGCAAGTCTACGAAAACTACAGTAACCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28721</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>177714</contig_pos>
        <strand>+</strand>
        <context>CACCYAGAAT[C/G]CATCTAGGAK</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGCCTACCGTATCAGACCCATATCGCACACATCGCCCACCCACCTAGAAT</left_flank>
        <right_flank>CATCTAGGAGACGCGCGCATTCGGAACACTCGATTCAGCCGGACCTGTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTGATATGCAATCAAAAACAGATCAAAATGGGAAAAAATTCGCTAAAAATTGTTTTTTTTCATTTGTTCAAAAAATATGTCTCATTTTCACTTTTTTTGAAATTGCATGAAAAAAATTAAAAATTTTTATAATTTACACTTTGTAATTATTGTATACTTACCAACTTACCTTTTATTCCACCTGAAAATACGATTTTTACAATAATTACAAAGTGAAATCAAAAAATCTCAATATCACCTATTTTGGCGAAAAACATAGCAATTAACGAGTGAAAGACATGTTTTTGCAAGAATTCAGCGATTTTTTATTCTGCCATAATTCTTTTTCACAAAAAACATCGAAGGAATAATCGAAAAATCAGAAATGTAGGCTCGAATTGACAAAGTTGCCGGTGTGGATTTACGGTAAACAATGCGCGCATCCGGGATTTCGGAGTGTTGTAGTCGGCCTACCGTATCAGACCCATATCGCACACATCGCCCACCCACCTAGAATGCATCTAGGAGACGCGCGCATTCGGAACACTCGATTCAGCCGGACCTGTGACCTTTCGATCTGAAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGGAAGCGAAGGAGGGTGGATGGCGTATAGGAAAGGGAGGAGAGTCTACGAGCAAGTCTACGAAAACTACAGTAACCTGAATAAGCCTCAGCGAACTGATCGAAATAATCAATTGCTCCGTGATAAGACTCTCGACACAAATCGCTTTCTTTTAAGCTATCCTTGGTTTTCTTGATTCCAGAAACTTCATTAATATGGGTGAATGGATAGAAGGTGCGACTTGTATAGTAATTTTCAAAGCCTAAGCAACTTGGGTACTTTGTAAGGATTTGGAAGTACCAGTCGTCAATGTGGAGCGTCCGAAATTTTAGTTCAGTCTTGAATGGTTAAGTTTTATGAAGTTGAAAATGTTAATTTTGAATTCAGCGTTTTTTGAGCTTCAAAATGAGCCTATACACGACTAG</canonical>
            <polymorphic>AATTTGATATGCAATCAAAAACAGATCAAAATGGGAAAAAATTCGCTAAAAATTGTTTTTTTTCATTTGTTCAAAAAATATGTCTCATTTTCACTTTTTTTGAAATTGCATGAAAAAAATTAAAAATTTTTATAATTTACACTTTGTAATTATTGTATACTTACCAACTTACCTTTTATTCCACCTGAAAATACGATTTTTACAATAATTACAAAGTGAAATCAAAAAATCTCAATATCACCTATTTTGGCGAAAAACATAGCAATTAACGAGTGAAAGACATGTTTTTGCAAGAATTCAGCGATTTTTTATTCTGCCATAATTCTTTTTCACAAAAAACATCGAAGGAATAATCGAAAAATCAGAAATGTAGGCTCGAATTGACAAAGTTGCCGGTGTGGATTTACGGTAAACAATGCGCGCATCCGGGATTTCGGAGTGTTGTAGTCGGCCTACCGTATCAGACCCATATCGCACACATCGCCCACCCACCTAGAATSCATCTAGGAGACGCGCGCATTCGGAACACTCGATTCAGCCGGACCTGTGACCTTTCGATCTGAAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGGAAGCGAAGGAGGGTGGATGGCGTATAGGAAAGGGAGGAGAGTCTACGAGCAAGTCTACGAAAACTACAGTAACCTGAATAAGCCTCAGCGAACTGATCGAAATAATCAATTGCTCCGTGATAAGACTCTCGACACAAATCGCTTTCTTTTAAGCTATCCTTGGTTTTCTTGATTCCAGAAACTTCATTAATATGGGTGAATGGATAGAAGGTGCGACTTGTATAGTAATTTTCAAAGCCTAAGCAACTTGGGTACTTTGTAAGGATTTGGAAGTACCAGTCGTCAATGTGGAGCGTCCGAAATTTTAGTTCAGTCTTGAATGGTTAAGTTTTATGAAGTTGAAAATGTTAATTTTGAATTCAGCGTTTTTTGAGCTTCAAAATGAGCCTATACACGACTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATGCAT</site>
                <isoschizomers>
                    <enzyme>BfrBI</enzyme>
                    <enzyme>EcoT22I</enzyme>
                    <enzyme>Mph1103I</enzyme>
                    <enzyme>NsiI</enzyme>
                    <enzyme>Ppu10I</enzyme>
                    <enzyme>Zsp2I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 210 182 97 11</canonical_bands>
                <polymorphic_bands>710 182 97 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTTCGGAGTGTTGTAGTC</pcr_primer_p1>
		<pcr_primer_p2>TCAGGTTACTGTAGTTTTCGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGATTTCGGAGTGTTGTAGTCGGCCTACCGTATCAGACCCATATCGCACACATCGCCCACCCACCTAGAATGCATCTAGGAGACGCGCGCATTCGGAACACTCGATTCAGCCGGACCTGTGACCTTTCGATCTGAAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGGAAGCGAAGGAGGGTGGATGGCGTATAGGAAAGGGAGGAGAGTCTACGAGCAAGTCTACGAAAACTACAGTAACCTGA</canonical_amplicon>
		<polymorphic_amplicon>GGATTTCGGAGTGTTGTAGTCGGCCTACCGTATCAGACCCATATCGCACACATCGCCCACCCACCTAGAATSCATCTAGGAGACGCGCGCATTCGGAACACTCGATTCAGCCGGACCTGTGACCTTTCGATCTGAAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGGAAGCGAAGGAGGGTGGATGGCGTATAGGAAAGGGAGGAGAGTCTACGAGCAAGTCTACGAAAACTACAGTAACCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28722</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>177724</contig_pos>
        <strand>+</strand>
        <context>SCATCTAGGA[G/T]ACKCGCGCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATCAGACCCATATCGCACACATCGCCCACCCACCTAGAATGCATCTAGGA</left_flank>
        <right_flank>ACGCGCGCATTCGGAACACTCGATTCAGCCGGACCTGTGACCTTTCGATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAATCAAAAACAGATCAAAATGGGAAAAAATTCGCTAAAAATTGTTTTTTTTCATTTGTTCAAAAAATATGTCTCATTTTCACTTTTTTTGAAATTGCATGAAAAAAATTAAAAATTTTTATAATTTACACTTTGTAATTATTGTATACTTACCAACTTACCTTTTATTCCACCTGAAAATACGATTTTTACAATAATTACAAAGTGAAATCAAAAAATCTCAATATCACCTATTTTGGCGAAAAACATAGCAATTAACGAGTGAAAGACATGTTTTTGCAAGAATTCAGCGATTTTTTATTCTGCCATAATTCTTTTTCACAAAAAACATCGAAGGAATAATCGAAAAATCAGAAATGTAGGCTCGAATTGACAAAGTTGCCGGTGTGGATTTACGGTAAACAATGCGCGCATCCGGGATTTCGGAGTGTTGTAGTCGGCCTACCGTATCAGACCCATATCGCACACATCGCCCACCCACCTAGAATGCATCTAGGAGACGCGCGCATTCGGAACACTCGATTCAGCCGGACCTGTGACCTTTCGATCTGAAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGGAAGCGAAGGAGGGTGGATGGCGTATAGGAAAGGGAGGAGAGTCTACGAGCAAGTCTACGAAAACTACAGTAACCTGAATAAGCCTCAGCGAACTGATCGAAATAATCAATTGCTCCGTGATAAGACTCTCGACACAAATCGCTTTCTTTTAAGCTATCCTTGGTTTTCTTGATTCCAGAAACTTCATTAATATGGGTGAATGGATAGAAGGTGCGACTTGTATAGTAATTTTCAAAGCCTAAGCAACTTGGGTACTTTGTAAGGATTTGGAAGTACCAGTCGTCAATGTGGAGCGTCCGAAATTTTAGTTCAGTCTTGAATGGTTAAGTTTTATGAAGTTGAAAATGTTAATTTTGAATTCAGCGTTTTTTGAGCTTCAAAATGAGCCTATACACGACTAGGCTAGCTTAA</canonical>
            <polymorphic>GCAATCAAAAACAGATCAAAATGGGAAAAAATTCGCTAAAAATTGTTTTTTTTCATTTGTTCAAAAAATATGTCTCATTTTCACTTTTTTTGAAATTGCATGAAAAAAATTAAAAATTTTTATAATTTACACTTTGTAATTATTGTATACTTACCAACTTACCTTTTATTCCACCTGAAAATACGATTTTTACAATAATTACAAAGTGAAATCAAAAAATCTCAATATCACCTATTTTGGCGAAAAACATAGCAATTAACGAGTGAAAGACATGTTTTTGCAAGAATTCAGCGATTTTTTATTCTGCCATAATTCTTTTTCACAAAAAACATCGAAGGAATAATCGAAAAATCAGAAATGTAGGCTCGAATTGACAAAGTTGCCGGTGTGGATTTACGGTAAACAATGCGCGCATCCGGGATTTCGGAGTGTTGTAGTCGGCCTACCGTATCAGACCCATATCGCACACATCGCCCACCCACCTAGAATGCATCTAGGAKACGCGCGCATTCGGAACACTCGATTCAGCCGGACCTGTGACCTTTCGATCTGAAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGGAAGCGAAGGAGGGTGGATGGCGTATAGGAAAGGGAGGAGAGTCTACGAGCAAGTCTACGAAAACTACAGTAACCTGAATAAGCCTCAGCGAACTGATCGAAATAATCAATTGCTCCGTGATAAGACTCTCGACACAAATCGCTTTCTTTTAAGCTATCCTTGGTTTTCTTGATTCCAGAAACTTCATTAATATGGGTGAATGGATAGAAGGTGCGACTTGTATAGTAATTTTCAAAGCCTAAGCAACTTGGGTACTTTGTAAGGATTTGGAAGTACCAGTCGTCAATGTGGAGCGTCCGAAATTTTAGTTCAGTCTTGAATGGTTAAGTTTTATGAAGTTGAAAATGTTAATTTTGAATTCAGCGTTTTTTGAGCTTCAAAATGAGCCTATACACGACTAGGCTAGCTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTTCGGAGTGTTGTAGTC</pcr_primer_p1>
		<pcr_primer_p2>TCAGGTTACTGTAGTTTTCGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGATTTCGGAGTGTTGTAGTCGGCCTACCGTATCAGACCCATATCGCACACATCGCCCACCCACCTAGAATGCATCTAGGAGACGCGCGCATTCGGAACACTCGATTCAGCCGGACCTGTGACCTTTCGATCTGAAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGGAAGCGAAGGAGGGTGGATGGCGTATAGGAAAGGGAGGAGAGTCTACGAGCAAGTCTACGAAAACTACAGTAACCTGA</canonical_amplicon>
		<polymorphic_amplicon>GGATTTCGGAGTGTTGTAGTCGGCCTACCGTATCAGACCCATATCGCACACATCGCCCACCCACCTAGAATGCATCTAGGAKACGCGCGCATTCGGAACACTCGATTCAGCCGGACCTGTGACCTTTCGATCTGAAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGGAAGCGAAGGAGGGTGGATGGCGTATAGGAAAGGGAGGAGAGTCTACGAGCAAGTCTACGAAAACTACAGTAACCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28723</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>177727</contig_pos>
        <strand>+</strand>
        <context>TCTAGGAKAC[G/T]CGCGCATTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGACCCATATCGCACACATCGCCCACCCACCTAGAATGCATCTAGGAGAC</left_flank>
        <right_flank>CGCGCATTCGGAACACTCGATTCAGCCGGACCTGTGACCTTTCGATCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAAAAACAGATCAAAATGGGAAAAAATTCGCTAAAAATTGTTTTTTTTCATTTGTTCAAAAAATATGTCTCATTTTCACTTTTTTTGAAATTGCATGAAAAAAATTAAAAATTTTTATAATTTACACTTTGTAATTATTGTATACTTACCAACTTACCTTTTATTCCACCTGAAAATACGATTTTTACAATAATTACAAAGTGAAATCAAAAAATCTCAATATCACCTATTTTGGCGAAAAACATAGCAATTAACGAGTGAAAGACATGTTTTTGCAAGAATTCAGCGATTTTTTATTCTGCCATAATTCTTTTTCACAAAAAACATCGAAGGAATAATCGAAAAATCAGAAATGTAGGCTCGAATTGACAAAGTTGCCGGTGTGGATTTACGGTAAACAATGCGCGCATCCGGGATTTCGGAGTGTTGTAGTCGGCCTACCGTATCAGACCCATATCGCACACATCGCCCACCCACCTAGAATGCATCTAGGAGACGCGCGCATTCGGAACACTCGATTCAGCCGGACCTGTGACCTTTCGATCTGAAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGGAAGCGAAGGAGGGTGGATGGCGTATAGGAAAGGGAGGAGAGTCTACGAGCAAGTCTACGAAAACTACAGTAACCTGAATAAGCCTCAGCGAACTGATCGAAATAATCAATTGCTCCGTGATAAGACTCTCGACACAAATCGCTTTCTTTTAAGCTATCCTTGGTTTTCTTGATTCCAGAAACTTCATTAATATGGGTGAATGGATAGAAGGTGCGACTTGTATAGTAATTTTCAAAGCCTAAGCAACTTGGGTACTTTGTAAGGATTTGGAAGTACCAGTCGTCAATGTGGAGCGTCCGAAATTTTAGTTCAGTCTTGAATGGTTAAGTTTTATGAAGTTGAAAATGTTAATTTTGAATTCAGCGTTTTTTGAGCTTCAAAATGAGCCTATACACGACTAGGCTAGCTTAACTT</canonical>
            <polymorphic>ATCAAAAACAGATCAAAATGGGAAAAAATTCGCTAAAAATTGTTTTTTTTCATTTGTTCAAAAAATATGTCTCATTTTCACTTTTTTTGAAATTGCATGAAAAAAATTAAAAATTTTTATAATTTACACTTTGTAATTATTGTATACTTACCAACTTACCTTTTATTCCACCTGAAAATACGATTTTTACAATAATTACAAAGTGAAATCAAAAAATCTCAATATCACCTATTTTGGCGAAAAACATAGCAATTAACGAGTGAAAGACATGTTTTTGCAAGAATTCAGCGATTTTTTATTCTGCCATAATTCTTTTTCACAAAAAACATCGAAGGAATAATCGAAAAATCAGAAATGTAGGCTCGAATTGACAAAGTTGCCGGTGTGGATTTACGGTAAACAATGCGCGCATCCGGGATTTCGGAGTGTTGTAGTCGGCCTACCGTATCAGACCCATATCGCACACATCGCCCACCCACCTAGAATGCATCTAGGAGACKCGCGCATTCGGAACACTCGATTCAGCCGGACCTGTGACCTTTCGATCTGAAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGGAAGCGAAGGAGGGTGGATGGCGTATAGGAAAGGGAGGAGAGTCTACGAGCAAGTCTACGAAAACTACAGTAACCTGAATAAGCCTCAGCGAACTGATCGAAATAATCAATTGCTCCGTGATAAGACTCTCGACACAAATCGCTTTCTTTTAAGCTATCCTTGGTTTTCTTGATTCCAGAAACTTCATTAATATGGGTGAATGGATAGAAGGTGCGACTTGTATAGTAATTTTCAAAGCCTAAGCAACTTGGGTACTTTGTAAGGATTTGGAAGTACCAGTCGTCAATGTGGAGCGTCCGAAATTTTAGTTCAGTCTTGAATGGTTAAGTTTTATGAAGTTGAAAATGTTAATTTTGAATTCAGCGTTTTTTGAGCTTCAAAATGAGCCTATACACGACTAGGCTAGCTTAACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>441 407 93 57 2</canonical_bands>
                <polymorphic_bands>441 407 95 57</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>428 407 93 57 11 2 2</canonical_bands>
                <polymorphic_bands>428 407 95 57 11 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGCGC</site>
                <isoschizomers>
                    <enzyme>BsePI</enzyme>
                    <enzyme>BssHII</enzyme>
                    <enzyme>PauI</enzyme>
                </isoschizomers>
                <canonical_bands>500 405 95</canonical_bands>
                <polymorphic_bands>595 405</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>488 407 95 10</canonical_bands>
                <polymorphic_bands>583 407 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTTCGGAGTGTTGTAGTC</pcr_primer_p1>
		<pcr_primer_p2>TCAGGTTACTGTAGTTTTCGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGATTTCGGAGTGTTGTAGTCGGCCTACCGTATCAGACCCATATCGCACACATCGCCCACCCACCTAGAATGCATCTAGGAGACGCGCGCATTCGGAACACTCGATTCAGCCGGACCTGTGACCTTTCGATCTGAAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGGAAGCGAAGGAGGGTGGATGGCGTATAGGAAAGGGAGGAGAGTCTACGAGCAAGTCTACGAAAACTACAGTAACCTGA</canonical_amplicon>
		<polymorphic_amplicon>GGATTTCGGAGTGTTGTAGTCGGCCTACCGTATCAGACCCATATCGCACACATCGCCCACCCACCTAGAATGCATCTAGGAGACKCGCGCATTCGGAACACTCGATTCAGCCGGACCTGTGACCTTTCGATCTGAAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGGAAGCGAAGGAGGGTGGATGGCGTATAGGAAAGGGAGGAGAGTCTACGAGCAAGTCTACGAAAACTACAGTAACCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28724</snp_id>
        <super_contig>c004001494.Contig1</super_contig>
        <contig_pos>177777</contig_pos>
        <strand>+</strand>
        <context>TTTCGATCTG[A/G]AGTCGAACGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCGCGCATTCGGAACACTCGATTCAGCCGGACCTGTGACCTTTCGATCTG</left_flank>
        <right_flank>AGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGGAAGCGAAGGAGGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTGTTCAAAAAATATGTCTCATTTTCACTTTTTTTGAAATTGCATGAAAAAAATTAAAAATTTTTATAATTTACACTTTGTAATTATTGTATACTTACCAACTTACCTTTTATTCCACCTGAAAATACGATTTTTACAATAATTACAAAGTGAAATCAAAAAATCTCAATATCACCTATTTTGGCGAAAAACATAGCAATTAACGAGTGAAAGACATGTTTTTGCAAGAATTCAGCGATTTTTTATTCTGCCATAATTCTTTTTCACAAAAAACATCGAAGGAATAATCGAAAAATCAGAAATGTAGGCTCGAATTGACAAAGTTGCCGGTGTGGATTTACGGTAAACAATGCGCGCATCCGGGATTTCGGAGTGTTGTAGTCGGCCTACCGTATCAGACCCATATCGCACACATCGCCCACCCACCTAGAATGCATCTAGGAGACGCGCGCATTCGGAACACTCGATTCAGCCGGACCTGTGACCTTTCGATCTGAAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGGAAGCGAAGGAGGGTGGATGGCGTATAGGAAAGGGAGGAGAGTCTACGAGCAAGTCTACGAAAACTACAGTAACCTGAATAAGCCTCAGCGAACTGATCGAAATAATCAATTGCTCCGTGATAAGACTCTCGACACAAATCGCTTTCTTTTAAGCTATCCTTGGTTTTCTTGATTCCAGAAACTTCATTAATATGGGTGAATGGATAGAAGGTGCGACTTGTATAGTAATTTTCAAAGCCTAAGCAACTTGGGTACTTTGTAAGGATTTGGAAGTACCAGTCGTCAATGTGGAGCGTCCGAAATTTTAGTTCAGTCTTGAATGGTTAAGTTTTATGAAGTTGAAAATGTTAATTTTGAATTCAGCGTTTTTTGAGCTTCAAAATGAGCCTATACACGACTAGGCTAGCTTAACTTTGAGTTTGGCGAATTCTGTCAGATGCGTCGCGGTTGCGTTATTTTGAAGT</canonical>
            <polymorphic>CATTTGTTCAAAAAATATGTCTCATTTTCACTTTTTTTGAAATTGCATGAAAAAAATTAAAAATTTTTATAATTTACACTTTGTAATTATTGTATACTTACCAACTTACCTTTTATTCCACCTGAAAATACGATTTTTACAATAATTACAAAGTGAAATCAAAAAATCTCAATATCACCTATTTTGGCGAAAAACATAGCAATTAACGAGTGAAAGACATGTTTTTGCAAGAATTCAGCGATTTTTTATTCTGCCATAATTCTTTTTCACAAAAAACATCGAAGGAATAATCGAAAAATCAGAAATGTAGGCTCGAATTGACAAAGTTGCCGGTGTGGATTTACGGTAAACAATGCGCGCATCCGGGATTTCGGAGTGTTGTAGTCGGCCTACCGTATCAGACCCATATCGCACACATCGCCCACCCACCTAGAATGCATCTAGGAGACGCGCGCATTCGGAACACTCGATTCAGCCGGACCTGTGACCTTTCGATCTGRAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGGAAGCGAAGGAGGGTGGATGGCGTATAGGAAAGGGAGGAGAGTCTACGAGCAAGTCTACGAAAACTACAGTAACCTGAATAAGCCTCAGCGAACTGATCGAAATAATCAATTGCTCCGTGATAAGACTCTCGACACAAATCGCTTTCTTTTAAGCTATCCTTGGTTTTCTTGATTCCAGAAACTTCATTAATATGGGTGAATGGATAGAAGGTGCGACTTGTATAGTAATTTTCAAAGCCTAAGCAACTTGGGTACTTTGTAAGGATTTGGAAGTACCAGTCGTCAATGTGGAGCGTCCGAAATTTTAGTTCAGTCTTGAATGGTTAAGTTTTATGAAGTTGAAAATGTTAATTTTGAATTCAGCGTTTTTTGAGCTTCAAAATGAGCCTATACACGACTAGGCTAGCTTAACTTTGAGTTTGGCGAATTCTGTCAGATGCGTCGCGGTTGCGTTATTTTGAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>336 301 137 72 60 38 29 27</canonical_bands>
                <polymorphic_bands>374 301 137 72 60 29 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTTCGGAGTGTTGTAGTC</pcr_primer_p1>
		<pcr_primer_p2>TCAGGTTACTGTAGTTTTCGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGATTTCGGAGTGTTGTAGTCGGCCTACCGTATCAGACCCATATCGCACACATCGCCCACCCACCTAGAATGCATCTAGGAGACGCGCGCATTCGGAACACTCGATTCAGCCGGACCTGTGACCTTTCGATCTGAAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGGAAGCGAAGGAGGGTGGATGGCGTATAGGAAAGGGAGGAGAGTCTACGAGCAAGTCTACGAAAACTACAGTAACCTGA</canonical_amplicon>
		<polymorphic_amplicon>GGATTTCGGAGTGTTGTAGTCGGCCTACCGTATCAGACCCATATCGCACACATCGCCCACCCACCTAGAATGCATCTAGGAGACGCGCGCATTCGGAACACTCGATTCAGCCGGACCTGTGACCTTTCGATCTGRAGTCGAACGCGCTACCATTGCGCCAAGCAGTCACGGAAGCGAAGGAGGGTGGATGGCGTATAGGAAAGGGAGGAGAGTCTACGAGCAAGTCTACGAAAACTACAGTAACCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28725</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>8294</contig_pos>
        <strand>+</strand>
        <context>ACCATGTAAA[A/G]AACATYATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGTTTATCAATAAAATTGTTCTGATTCCAAGTATATTGCACCATGTAAA</left_flank>
        <right_flank>AACATCATAAAGAGAGTGTATCTAACTGATTCTCGGAAAAATATTTCTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCCCCCCTCCTCCATTTGTTTTGTTGCTAGGAAGTTATATTTTTAGTTTCAATTTGAAATTAGCGGCTCCGAGATTTTTTTATTTGGAAAGCTGTGCGTACACAAGTTCAAAATCACGGGAAACATGGACGAATTGTTTAGAAAATTTAACATTTGTTTCAGAATTCTCACTTTGATTCATTTTTTTTTTGGTTTTTGTTTGTTTGCCTGGATTGCGTACGATATTCTCATGTATTTATAATAGCTCTCGTCCAAGTTTCATAGTTGTTAGTTTTATCTTTGTTTAGATTCTAATAGTGGGCAATAGTTGAAAAACACCAACTATAACCTGCTGCAGACACACAAATTCTCTGTTTTGTTTGATAGTGAGGAATAATTAGAAAACACCAACATGATAATGCTCAAGGAGTGTGCATGATGCCTTATATTTCTTTTGTTTTAAAAATAATTGTTTATCAATAAAATTGTTCTGATTCCAAGTATATTGCACCATGTAAAGAACATCATAAAGAGAGTGTATCTAACTGATTCTCGGAAAAATATTTCTTATGGCACTCTTATCTTGGAAACATTTTTACTTGACGGAAAAATCGACCATTTTTTCTATTGACCCCGGAAATGTTTTTGAAAGTACAGAAATTTTTTTTTCTGAAAACCCGTGTCAAGACGGGCCTGGCCGAGCCTGACCGGGCCCGGGCCCTTGCAAGTATGGTTAAAAGCAATTTCGAAGCACTTCATGAGTTTCTTCACAGATTTATAAAGAAACTATAAAAATTTGATTCATTGTTTTTCTTGGAGATTGTTGGGTGCTTAACCGGATCATATTTTTGCGGCTTTCTACGTATCAATTTTATTATAATGTTTAATTCTTTTCCAAAATGATCTTTTGAACTCGTAATATGCTCGATGGTGTTCAATTATCCATTGGCAGAGTGAGCGCAAATTTCCCTTTGGCTTAGTGAGATGCATTTCTCAAATTAAGAGAGTGGGTGAGCATGA</canonical>
            <polymorphic>CCCCCCCCTCCTCCATTTGTTTTGTTGCTAGGAAGTTATATTTTTAGTTTCAATTTGAAATTAGCGGCTCCGAGATTTTTTTATTTGGAAAGCTGTGCGTACACAAGTTCAAAATCACGGGAAACATGGACGAATTGTTTAGAAAATTTAACATTTGTTTCAGAATTCTCACTTTGATTCATTTTTTTTTTGGTTTTTGTTTGTTTGCCTGGATTGCGTACGATATTCTCATGTATTTATAATAGCTCTCGTCCAAGTTTCATAGTTGTTAGTTTTATCTTTGTTTAGATTCTAATAGTGGGCAATAGTTGAAAAACACCAACTATAACCTGCTGCAGACACACAAATTCTCTGTTTTGTTTGATAGTGAGGAATAATTAGAAAACACCAACATGATAATGCTCAAGGAGTGTGCATGATGCCTTATATTTCTTTTGTTTTAAAAATAATTGTTTATCAATAAAATTGTTCTGATTCCAAGTATATTGCACCATGTAAARAACATCATAAAGAGAGTGTATCTAACTGATTCTCGGAAAAATATTTCTTATGGCACTCTTATCTTGGAAACATTTTTACTTGACGGAAAAATCGACCATTTTTTCTATTGACCCCGGAAATGTTTTTGAAAGTACAGAAATTTTTTTTTCTGAAAACCCGTGTCAAGACGGGCCTGGCCGAGCCTGACCGGGCCCGGGCCCTTGCAAGTATGGTTAAAAGCAATTTCGAAGCACTTCATGAGTTTCTTCACAGATTTATAAAGAAACTATAAAAATTTGATTCATTGTTTTTCTTGGAGATTGTTGGGTGCTTAACCGGATCATATTTTTGCGGCTTTCTACGTATCAATTTTATTATAATGTTTAATTCTTTTCCAAAATGATCTTTTGAACTCGTAATATGCTCGATGGTGTTCAATTATCCATTGGCAGAGTGAGCGCAAATTTCCCTTTGGCTTAGTGAGATGCATTTCTCAAATTAAGAGAGTGGGTGAGCATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACACAAATTCTCTGTTTTGTT</pcr_primer_p1>
		<pcr_primer_p2>TCAAGTAAAAATGTTTCCAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACACACAAATTCTCTGTTTTGTTTGATAGTGAGGAATAATTAGAAAACACCAACATGATAATGCTCAAGGAGTGTGCATGATGCCTTATATTTCTTTTGTTTTAAAAATAATTGTTTATCAATAAAATTGTTCTGATTCCAAGTATATTGCACCATGTAAAGAACATCATAAAGAGAGTGTATCTAACTGATTCTCGGAAAAATATTTCTTATGGCACTCTTATCTTGGAAACATTTTTACTTGA</canonical_amplicon>
		<polymorphic_amplicon>ACACACAAATTCTCTGTTTTGTTTGATAGTGAGGAATAATTAGAAAACACCAACATGATAATGCTCAAGGAGTGTGCATGATGCCTTATATTTCTTTTGTTTTAAAAATAATTGTTTATCAATAAAATTGTTCTGATTCCAAGTATATTGCACCATGTAAARAACATCATAAAGAGAGTGTATCTAACTGATTCTCGGAAAAATATTTCTTATGGCACTCTTATCTTGGAAACATTTTTACTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28726</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>8300</contig_pos>
        <strand>+</strand>
        <context>TAAARAACAT[C/T]ATAAAGAGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCAATAAAATTGTTCTGATTCCAAGTATATTGCACCATGTAAAGAACAT</left_flank>
        <right_flank>ATAAAGAGAGTGTATCTAACTGATTCTCGGAAAAATATTTCTTATGGCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCCTCCATTTGTTTTGTTGCTAGGAAGTTATATTTTTAGTTTCAATTTGAAATTAGCGGCTCCGAGATTTTTTTATTTGGAAAGCTGTGCGTACACAAGTTCAAAATCACGGGAAACATGGACGAATTGTTTAGAAAATTTAACATTTGTTTCAGAATTCTCACTTTGATTCATTTTTTTTTTGGTTTTTGTTTGTTTGCCTGGATTGCGTACGATATTCTCATGTATTTATAATAGCTCTCGTCCAAGTTTCATAGTTGTTAGTTTTATCTTTGTTTAGATTCTAATAGTGGGCAATAGTTGAAAAACACCAACTATAACCTGCTGCAGACACACAAATTCTCTGTTTTGTTTGATAGTGAGGAATAATTAGAAAACACCAACATGATAATGCTCAAGGAGTGTGCATGATGCCTTATATTTCTTTTGTTTTAAAAATAATTGTTTATCAATAAAATTGTTCTGATTCCAAGTATATTGCACCATGTAAAGAACATCATAAAGAGAGTGTATCTAACTGATTCTCGGAAAAATATTTCTTATGGCACTCTTATCTTGGAAACATTTTTACTTGACGGAAAAATCGACCATTTTTTCTATTGACCCCGGAAATGTTTTTGAAAGTACAGAAATTTTTTTTTCTGAAAACCCGTGTCAAGACGGGCCTGGCCGAGCCTGACCGGGCCCGGGCCCTTGCAAGTATGGTTAAAAGCAATTTCGAAGCACTTCATGAGTTTCTTCACAGATTTATAAAGAAACTATAAAAATTTGATTCATTGTTTTTCTTGGAGATTGTTGGGTGCTTAACCGGATCATATTTTTGCGGCTTTCTACGTATCAATTTTATTATAATGTTTAATTCTTTTCCAAAATGATCTTTTGAACTCGTAATATGCTCGATGGTGTTCAATTATCCATTGGCAGAGTGAGCGCAAATTTCCCTTTGGCTTAGTGAGATGCATTTCTCAAATTAAGAGAGTGGGTGAGCATGAGAGTAA</canonical>
            <polymorphic>CCTCCTCCATTTGTTTTGTTGCTAGGAAGTTATATTTTTAGTTTCAATTTGAAATTAGCGGCTCCGAGATTTTTTTATTTGGAAAGCTGTGCGTACACAAGTTCAAAATCACGGGAAACATGGACGAATTGTTTAGAAAATTTAACATTTGTTTCAGAATTCTCACTTTGATTCATTTTTTTTTTGGTTTTTGTTTGTTTGCCTGGATTGCGTACGATATTCTCATGTATTTATAATAGCTCTCGTCCAAGTTTCATAGTTGTTAGTTTTATCTTTGTTTAGATTCTAATAGTGGGCAATAGTTGAAAAACACCAACTATAACCTGCTGCAGACACACAAATTCTCTGTTTTGTTTGATAGTGAGGAATAATTAGAAAACACCAACATGATAATGCTCAAGGAGTGTGCATGATGCCTTATATTTCTTTTGTTTTAAAAATAATTGTTTATCAATAAAATTGTTCTGATTCCAAGTATATTGCACCATGTAAAGAACATYATAAAGAGAGTGTATCTAACTGATTCTCGGAAAAATATTTCTTATGGCACTCTTATCTTGGAAACATTTTTACTTGACGGAAAAATCGACCATTTTTTCTATTGACCCCGGAAATGTTTTTGAAAGTACAGAAATTTTTTTTTCTGAAAACCCGTGTCAAGACGGGCCTGGCCGAGCCTGACCGGGCCCGGGCCCTTGCAAGTATGGTTAAAAGCAATTTCGAAGCACTTCATGAGTTTCTTCACAGATTTATAAAGAAACTATAAAAATTTGATTCATTGTTTTTCTTGGAGATTGTTGGGTGCTTAACCGGATCATATTTTTGCGGCTTTCTACGTATCAATTTTATTATAATGTTTAATTCTTTTCCAAAATGATCTTTTGAACTCGTAATATGCTCGATGGTGTTCAATTATCCATTGGCAGAGTGAGCGCAAATTTCCCTTTGGCTTAGTGAGATGCATTTCTCAAATTAAGAGAGTGGGTGAGCATGAGAGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACACAAATTCTCTGTTTTGTT</pcr_primer_p1>
		<pcr_primer_p2>TCAAGTAAAAATGTTTCCAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACACACAAATTCTCTGTTTTGTTTGATAGTGAGGAATAATTAGAAAACACCAACATGATAATGCTCAAGGAGTGTGCATGATGCCTTATATTTCTTTTGTTTTAAAAATAATTGTTTATCAATAAAATTGTTCTGATTCCAAGTATATTGCACCATGTAAAGAACATCATAAAGAGAGTGTATCTAACTGATTCTCGGAAAAATATTTCTTATGGCACTCTTATCTTGGAAACATTTTTACTTGA</canonical_amplicon>
		<polymorphic_amplicon>ACACACAAATTCTCTGTTTTGTTTGATAGTGAGGAATAATTAGAAAACACCAACATGATAATGCTCAAGGAGTGTGCATGATGCCTTATATTTCTTTTGTTTTAAAAATAATTGTTTATCAATAAAATTGTTCTGATTCCAAGTATATTGCACCATGTAAAGAACATYATAAAGAGAGTGTATCTAACTGATTCTCGGAAAAATATTTCTTATGGCACTCTTATCTTGGAAACATTTTTACTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28727</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>8326</contig_pos>
        <strand>+</strand>
        <context>CTAACTGATT[C/G]TCGGAAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TATATTGCACCATGTAAAGAACATCATAAAGAGAGTGTATCTAACTGATT</left_flank>
        <right_flank>TCGGAAAAATATTTCTTATGGCACTCTTATCTTGGAAACATTTTTACTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTTATATTTTTAGTTTCAATTTGAAATTAGCGGCTCCGAGATTTTTTTATTTGGAAAGCTGTGCGTACACAAGTTCAAAATCACGGGAAACATGGACGAATTGTTTAGAAAATTTAACATTTGTTTCAGAATTCTCACTTTGATTCATTTTTTTTTTGGTTTTTGTTTGTTTGCCTGGATTGCGTACGATATTCTCATGTATTTATAATAGCTCTCGTCCAAGTTTCATAGTTGTTAGTTTTATCTTTGTTTAGATTCTAATAGTGGGCAATAGTTGAAAAACACCAACTATAACCTGCTGCAGACACACAAATTCTCTGTTTTGTTTGATAGTGAGGAATAATTAGAAAACACCAACATGATAATGCTCAAGGAGTGTGCATGATGCCTTATATTTCTTTTGTTTTAAAAATAATTGTTTATCAATAAAATTGTTCTGATTCCAAGTATATTGCACCATGTAAAGAACATCATAAAGAGAGTGTATCTAACTGATTCTCGGAAAAATATTTCTTATGGCACTCTTATCTTGGAAACATTTTTACTTGACGGAAAAATCGACCATTTTTTCTATTGACCCCGGAAATGTTTTTGAAAGTACAGAAATTTTTTTTTCTGAAAACCCGTGTCAAGACGGGCCTGGCCGAGCCTGACCGGGCCCGGGCCCTTGCAAGTATGGTTAAAAGCAATTTCGAAGCACTTCATGAGTTTCTTCACAGATTTATAAAGAAACTATAAAAATTTGATTCATTGTTTTTCTTGGAGATTGTTGGGTGCTTAACCGGATCATATTTTTGCGGCTTTCTACGTATCAATTTTATTATAATGTTTAATTCTTTTCCAAAATGATCTTTTGAACTCGTAATATGCTCGATGGTGTTCAATTATCCATTGGCAGAGTGAGCGCAAATTTCCCTTTGGCTTAGTGAGATGCATTTCTCAAATTAAGAGAGTGGGTGAGCATGAGAGTAACGAAGGAGAATGGTAACTATGGAGTT</canonical>
            <polymorphic>AAGTTATATTTTTAGTTTCAATTTGAAATTAGCGGCTCCGAGATTTTTTTATTTGGAAAGCTGTGCGTACACAAGTTCAAAATCACGGGAAACATGGACGAATTGTTTAGAAAATTTAACATTTGTTTCAGAATTCTCACTTTGATTCATTTTTTTTTTGGTTTTTGTTTGTTTGCCTGGATTGCGTACGATATTCTCATGTATTTATAATAGCTCTCGTCCAAGTTTCATAGTTGTTAGTTTTATCTTTGTTTAGATTCTAATAGTGGGCAATAGTTGAAAAACACCAACTATAACCTGCTGCAGACACACAAATTCTCTGTTTTGTTTGATAGTGAGGAATAATTAGAAAACACCAACATGATAATGCTCAAGGAGTGTGCATGATGCCTTATATTTCTTTTGTTTTAAAAATAATTGTTTATCAATAAAATTGTTCTGATTCCAAGTATATTGCACCATGTAAAGAACATCATAAAGAGAGTGTATCTAACTGATTSTCGGAAAAATATTTCTTATGGCACTCTTATCTTGGAAACATTTTTACTTGACGGAAAAATCGACCATTTTTTCTATTGACCCCGGAAATGTTTTTGAAAGTACAGAAATTTTTTTTTCTGAAAACCCGTGTCAAGACGGGCCTGGCCGAGCCTGACCGGGCCCGGGCCCTTGCAAGTATGGTTAAAAGCAATTTCGAAGCACTTCATGAGTTTCTTCACAGATTTATAAAGAAACTATAAAAATTTGATTCATTGTTTTTCTTGGAGATTGTTGGGTGCTTAACCGGATCATATTTTTGCGGCTTTCTACGTATCAATTTTATTATAATGTTTAATTCTTTTCCAAAATGATCTTTTGAACTCGTAATATGCTCGATGGTGTTCAATTATCCATTGGCAGAGTGAGCGCAAATTTCCCTTTGGCTTAGTGAGATGCATTTCTCAAATTAAGAGAGTGGGTGAGCATGAGAGTAACGAAGGAGAATGGTAACTATGGAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>253 251 185 144 112 55</canonical_bands>
                <polymorphic_bands>306 253 185 144 112</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>253 251 185 144 112 55</canonical_bands>
                <polymorphic_bands>306 253 185 144 112</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAGTATATTGCACCATGTAA</pcr_primer_p1>
		<pcr_primer_p2>GAAATTGCTTTTAACCATACTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCAAGTATATTGCACCATGTAAAGAACATCATAAAGAGAGTGTATCTAACTGATTCTCGGAAAAATATTTCTTATGGCACTCTTATCTTGGAAACATTTTTACTTGACGGAAAAATCGACCATTTTTTCTATTGACCCCGGAAATGTTTTTGAAAGTACAGAAATTTTTTTTTCTGAAAACCCGTGTCAAGACGGGCCTGGCCGAGCCTGACCGGGCCCGGGCCCTTGCAAGTATGGTTAAAAGCAATTTC</canonical_amplicon>
		<polymorphic_amplicon>CCAAGTATATTGCACCATGTAAAGAACATCATAAAGAGAGTGTATCTAACTGATTSTCGGAAAAATATTTCTTATGGCACTCTTATCTTGGAAACATTTTTACTTGACGGAAAAATCGACCATTTTTTCTATTGACCCCGGAAATGTTTTTGAAAGTACAGAAATTTTTTTTTCTGAAAACCCGTGTCAAGACGGGCCTGGCCGAGCCTGACCGGGCCCGGGCCCTTGCAAGTATGGTTAAAAGCAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28728</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>11624</contig_pos>
        <strand></strand>
        <context>ACATGAAAGG[G/T]WTCTGCCACA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGAATCGCCTTCAAGCTTTTTTGGACGTTAGAGACACTTCACATGAAAGG</left_flank>
        <right_flank>TTCTGCCACAGAGACATTCATTGGGAGAACGTACTTCTCCGAAGAGAGCG</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACGTATAACAGATTTTTAAGACTAAAACTTTTTCAGAGATCACCAACAAAACGGCCTATGCTTTCAAAATCGGTACTTGGAAACCGGAGAGTTTCGCGGCACAGGCGCTCAAGGAAGAGCATTTTCTGTTAGGGATACAATTCTCGGAGAGAATGGTCTCATTATGAAGATGTCTTCACTTTCTGAATCTTATCAAAGAGAGCTTCTGGTCCTCAAAGCAATGACAGCACACCGAGGATTTCCATATCTCTACGATTTTTTCACGATTCCTGAAGAGCTTGGCGGAGAACATTGTTTTGGTGAGTGATTGGAGAAAATCCCTGTTGCTGTCTTATCTTAAAAACAAAAATTAAATATCTATATTTTTTCAGTTACCAATTACGAAGGAGAATGTATTGGAACTATTGCTGCTCGCTCAGAAAGACGATTTTCCTACTCTAATCTAATGAGAATCGCCTTCAAGCTTTTTTGGACGTTAGAGACACTTCACATGAAAGGGTTCTGCCACAGAGACATTCATTGGGAGAACGTACTTCTCCGAAGAGAGCGTGATGGAGTGAGTTGCCATTTCTATTTTTGGTTGTGTCATGAATAAGTTCTTCTTTCAGATTCTCCATCTCAAGATTATCGATTTCGGATTGTCACTTCCGCTAGAACCATCGCCTTCTCCAGAACAAAATCTAACTTCTTGGCATGCCAGTCTACAAGTCTGCCGAAACCAATCCTACACCAGATTCGACGATCTTACTTCGGCCATTTTCCTCGTGATGCGATTCGTTCCACTCAACCCATTTGGAGCGGAACGAAGAGAGTACCAAACATTGAAAGCAGAATTTGTTTGTGAACTCGAATGTGTTCTTTCAATGATTACTGGTATTTTTAGGATCAAGATCCTTTCGAAATATTCAACGATGAGCTGGAATGGATCGCAGGACTGTATTCCGAAGTTAGTCTTCAAAGGACCACCGGCTACTCACACACTGATCTCTTCGATATTTT</canonical>
            <polymorphic>CACGTATAACAGATTTTTAAGACTAAAACTTTTTCAGAGATCACCAACAAAACGGCCTATGCTTTCAAAATCGGTACTTGGAAACCGGAGAGTTTCGCGGCACAGGCGCTCAAGGAAGAGCATTTTCTGTTAGGGATACAATTCTCGGAGAGAATGGTCTCATTATGAAGATGTCTTCACTTTCTGAATCTTATCAAAGAGAGCTTCTGGTCCTCAAAGCAATGACAGCACACCGAGGATTTCCATATCTCTACGATTTTTTCACGATTCCTGAAGAGCTTGGCGGAGAACATTGTTTTGGTGAGTGATTGGAGAAAATCCCTGTTGCTGTCTTATCTTAAAAACAAAAATTAAATATCTATATTTTTTCAGTTACCAATTACGAAGGAGAATGTATTGGAACTATTGCTGCTCGCTCAGAAAGACGATTTTCCTACTCTAATCTAATGAGAATCGCCTTCAAGCTTTTTTGGACGTTAGAGACACTTCACATGAAAGGKTTCTGCCACAGAGACATTCATTGGGAGAACGTACTTCTCCGAAGAGAGCGTGATGGAGTGAGTTGCCATTTCTATTTTTGGTTGTGTCATGAATAAGTTCTTCTTTCAGATTCTCCATCTCAAGATTATCGATTTCGGATTGTCACTTCCGCTAGAACCATCGCCTTCTCCAGAACAAAATCTAACTTCTTGGCATGCCAGTCTACAAGTCTGCCGAAACCAATCCTACACCAGATTCGACGATCTTACTTCGGCCATTTTCCTCGTGATGCGATTCGTTCCACTCAACCCATTTGGAGCGGAACGAAGAGAGTACCAAACATTGAAAGCAGAATTTGTTTGTGAACTCGAATGTGTTCTTTCAATGATTACTGGTATTTTTAGGATCAAGATCCTTTCGAAATATTCAACGATGAGCTGGAATGGATCGCAGGACTGTATTCCGAAGTTAGTCTTCAAAGGACCACCGGCTACTCACACACTGATCTCTTCGATATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTACGAAGGAGAATGTATTG</pcr_primer_p1>
		<pcr_primer_p2>TAATCTTGAGATGGAGAATCTGA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAATTACGAAGGAGAATGTATTGGAACTATTGCTGCTCGCTCAGAAAGACGATTTTCCTACTCTAATCTAATGAGAATCGCCTTCAAGCTTTTTTGGACGTTAGAGACACTTCACATGAAAGGGTTCTGCCACAGAGACATTCATTGGGAGAACGTACTTCTCCGAAGAGAGCGTGATGGAGTGAGTTGCCATTTCTATTTTTGGTTGTGTCATGAATAAGTTCTTCTTTCAGATTCTCCATCTCAAGATTA</canonical_amplicon>
		<polymorphic_amplicon>CAATTACGAAGGAGAATGTATTGGAACTATTGCTGCTCGCTCAGAAAGACGATTTTCCTACTCTAATCTAATGAGAATCGCCTTCAAGCTTTTTTGGACGTTAGAGACACTTCACATGAAAGGKTTCTGCCACAGAGACATTCATTGGGAGAACGTACTTCTCCGAAGAGAGCGTGATGGAGTGAGTTGCCATTTCTATTTTTGGTTGTGTCATGAATAAGTTCTTCTTTCAGATTCTCCATCTCAAGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28729</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>11625</contig_pos>
        <strand></strand>
        <context>CATGAAAGGK[T/A]TCTGCCACAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GAATCGCCTTCAAGCTTTTTTGGACGTTAGAGACACTTCACATGAAAGGG</left_flank>
        <right_flank>TCTGCCACAGAGACATTCATTGGGAGAACGTACTTCTCCGAAGAGAGCGT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGTATAACAGATTTTTAAGACTAAAACTTTTTCAGAGATCACCAACAAAACGGCCTATGCTTTCAAAATCGGTACTTGGAAACCGGAGAGTTTCGCGGCACAGGCGCTCAAGGAAGAGCATTTTCTGTTAGGGATACAATTCTCGGAGAGAATGGTCTCATTATGAAGATGTCTTCACTTTCTGAATCTTATCAAAGAGAGCTTCTGGTCCTCAAAGCAATGACAGCACACCGAGGATTTCCATATCTCTACGATTTTTTCACGATTCCTGAAGAGCTTGGCGGAGAACATTGTTTTGGTGAGTGATTGGAGAAAATCCCTGTTGCTGTCTTATCTTAAAAACAAAAATTAAATATCTATATTTTTTCAGTTACCAATTACGAAGGAGAATGTATTGGAACTATTGCTGCTCGCTCAGAAAGACGATTTTCCTACTCTAATCTAATGAGAATCGCCTTCAAGCTTTTTTGGACGTTAGAGACACTTCACATGAAAGGGTTCTGCCACAGAGACATTCATTGGGAGAACGTACTTCTCCGAAGAGAGCGTGATGGAGTGAGTTGCCATTTCTATTTTTGGTTGTGTCATGAATAAGTTCTTCTTTCAGATTCTCCATCTCAAGATTATCGATTTCGGATTGTCACTTCCGCTAGAACCATCGCCTTCTCCAGAACAAAATCTAACTTCTTGGCATGCCAGTCTACAAGTCTGCCGAAACCAATCCTACACCAGATTCGACGATCTTACTTCGGCCATTTTCCTCGTGATGCGATTCGTTCCACTCAACCCATTTGGAGCGGAACGAAGAGAGTACCAAACATTGAAAGCAGAATTTGTTTGTGAACTCGAATGTGTTCTTTCAATGATTACTGGTATTTTTAGGATCAAGATCCTTTCGAAATATTCAACGATGAGCTGGAATGGATCGCAGGACTGTATTCCGAAGTTAGTCTTCAAAGGACCACCGGCTACTCACACACTGATCTCTTCGATATTTTC</canonical>
            <polymorphic>ACGTATAACAGATTTTTAAGACTAAAACTTTTTCAGAGATCACCAACAAAACGGCCTATGCTTTCAAAATCGGTACTTGGAAACCGGAGAGTTTCGCGGCACAGGCGCTCAAGGAAGAGCATTTTCTGTTAGGGATACAATTCTCGGAGAGAATGGTCTCATTATGAAGATGTCTTCACTTTCTGAATCTTATCAAAGAGAGCTTCTGGTCCTCAAAGCAATGACAGCACACCGAGGATTTCCATATCTCTACGATTTTTTCACGATTCCTGAAGAGCTTGGCGGAGAACATTGTTTTGGTGAGTGATTGGAGAAAATCCCTGTTGCTGTCTTATCTTAAAAACAAAAATTAAATATCTATATTTTTTCAGTTACCAATTACGAAGGAGAATGTATTGGAACTATTGCTGCTCGCTCAGAAAGACGATTTTCCTACTCTAATCTAATGAGAATCGCCTTCAAGCTTTTTTGGACGTTAGAGACACTTCACATGAAAGGGWTCTGCCACAGAGACATTCATTGGGAGAACGTACTTCTCCGAAGAGAGCGTGATGGAGTGAGTTGCCATTTCTATTTTTGGTTGTGTCATGAATAAGTTCTTCTTTCAGATTCTCCATCTCAAGATTATCGATTTCGGATTGTCACTTCCGCTAGAACCATCGCCTTCTCCAGAACAAAATCTAACTTCTTGGCATGCCAGTCTACAAGTCTGCCGAAACCAATCCTACACCAGATTCGACGATCTTACTTCGGCCATTTTCCTCGTGATGCGATTCGTTCCACTCAACCCATTTGGAGCGGAACGAAGAGAGTACCAAACATTGAAAGCAGAATTTGTTTGTGAACTCGAATGTGTTCTTTCAATGATTACTGGTATTTTTAGGATCAAGATCCTTTCGAAATATTCAACGATGAGCTGGAATGGATCGCAGGACTGTATTCCGAAGTTAGTCTTCAAAGGACCACCGGCTACTCACACACTGATCTCTTCGATATTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>497 259 147 97</canonical_bands>
                <polymorphic_bands>594 259 147</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATTACGAAGGAGAATGTATTG</pcr_primer_p1>
		<pcr_primer_p2>TAATCTTGAGATGGAGAATCTGA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAATTACGAAGGAGAATGTATTGGAACTATTGCTGCTCGCTCAGAAAGACGATTTTCCTACTCTAATCTAATGAGAATCGCCTTCAAGCTTTTTTGGACGTTAGAGACACTTCACATGAAAGGGTTCTGCCACAGAGACATTCATTGGGAGAACGTACTTCTCCGAAGAGAGCGTGATGGAGTGAGTTGCCATTTCTATTTTTGGTTGTGTCATGAATAAGTTCTTCTTTCAGATTCTCCATCTCAAGATTA</canonical_amplicon>
		<polymorphic_amplicon>CAATTACGAAGGAGAATGTATTGGAACTATTGCTGCTCGCTCAGAAAGACGATTTTCCTACTCTAATCTAATGAGAATCGCCTTCAAGCTTTTTTGGACGTTAGAGACACTTCACATGAAAGGGWTCTGCCACAGAGACATTCATTGGGAGAACGTACTTCTCCGAAGAGAGCGTGATGGAGTGAGTTGCCATTTCTATTTTTGGTTGTGTCATGAATAAGTTCTTCTTTCAGATTCTCCATCTCAAGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28730</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>11703</contig_pos>
        <strand>+</strand>
        <context>TTTCTATTTT[G/T]GGTTGTGTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACGTACTTCTCCGAAGAGAGCGTGATGGAGTGAGTTGCCATTTCTATTTT</left_flank>
        <right_flank>GGTTGTGTCATGAATAAGTTCTTCTTTCAGATTCTCCATCTCAAGATTAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAACCGGAGAGTTTCGCGGCACAGGCGCTCAAGGAAGAGCATTTTCTGTTAGGGATACAATTCTCGGAGAGAATGGTCTCATTATGAAGATGTCTTCACTTTCTGAATCTTATCAAAGAGAGCTTCTGGTCCTCAAAGCAATGACAGCACACCGAGGATTTCCATATCTCTACGATTTTTTCACGATTCCTGAAGAGCTTGGCGGAGAACATTGTTTTGGTGAGTGATTGGAGAAAATCCCTGTTGCTGTCTTATCTTAAAAACAAAAATTAAATATCTATATTTTTTCAGTTACCAATTACGAAGGAGAATGTATTGGAACTATTGCTGCTCGCTCAGAAAGACGATTTTCCTACTCTAATCTAATGAGAATCGCCTTCAAGCTTTTTTGGACGTTAGAGACACTTCACATGAAAGGGTTCTGCCACAGAGACATTCATTGGGAGAACGTACTTCTCCGAAGAGAGCGTGATGGAGTGAGTTGCCATTTCTATTTTTGGTTGTGTCATGAATAAGTTCTTCTTTCAGATTCTCCATCTCAAGATTATCGATTTCGGATTGTCACTTCCGCTAGAACCATCGCCTTCTCCAGAACAAAATCTAACTTCTTGGCATGCCAGTCTACAAGTCTGCCGAAACCAATCCTACACCAGATTCGACGATCTTACTTCGGCCATTTTCCTCGTGATGCGATTCGTTCCACTCAACCCATTTGGAGCGGAACGAAGAGAGTACCAAACATTGAAAGCAGAATTTGTTTGTGAACTCGAATGTGTTCTTTCAATGATTACTGGTATTTTTAGGATCAAGATCCTTTCGAAATATTCAACGATGAGCTGGAATGGATCGCAGGACTGTATTCCGAAGTTAGTCTTCAAAGGACCACCGGCTACTCACACACTGATCTCTTCGATATTTTCTACAAATTCAACCCTGGATTCGACCCAACAAGCCCGATCACTTACCGTATCGTTCGTAATCAGTTAATTATTGATTAA</canonical>
            <polymorphic>GGAAACCGGAGAGTTTCGCGGCACAGGCGCTCAAGGAAGAGCATTTTCTGTTAGGGATACAATTCTCGGAGAGAATGGTCTCATTATGAAGATGTCTTCACTTTCTGAATCTTATCAAAGAGAGCTTCTGGTCCTCAAAGCAATGACAGCACACCGAGGATTTCCATATCTCTACGATTTTTTCACGATTCCTGAAGAGCTTGGCGGAGAACATTGTTTTGGTGAGTGATTGGAGAAAATCCCTGTTGCTGTCTTATCTTAAAAACAAAAATTAAATATCTATATTTTTTCAGTTACCAATTACGAAGGAGAATGTATTGGAACTATTGCTGCTCGCTCAGAAAGACGATTTTCCTACTCTAATCTAATGAGAATCGCCTTCAAGCTTTTTTGGACGTTAGAGACACTTCACATGAAAGGGTTCTGCCACAGAGACATTCATTGGGAGAACGTACTTCTCCGAAGAGAGCGTGATGGAGTGAGTTGCCATTTCTATTTTKGGTTGTGTCATGAATAAGTTCTTCTTTCAGATTCTCCATCTCAAGATTATCGATTTCGGATTGTCACTTCCGCTAGAACCATCGCCTTCTCCAGAACAAAATCTAACTTCTTGGCATGCCAGTCTACAAGTCTGCCGAAACCAATCCTACACCAGATTCGACGATCTTACTTCGGCCATTTTCCTCGTGATGCGATTCGTTCCACTCAACCCATTTGGAGCGGAACGAAGAGAGTACCAAACATTGAAAGCAGAATTTGTTTGTGAACTCGAATGTGTTCTTTCAATGATTACTGGTATTTTTAGGATCAAGATCCTTTCGAAATATTCAACGATGAGCTGGAATGGATCGCAGGACTGTATTCCGAAGTTAGTCTTCAAAGGACCACCGGCTACTCACACACTGATCTCTTCGATATTTTCTACAAATTCAACCCTGGATTCGACCCAACAAGCCCGATCACTTACCGTATCGTTCGTAATCAGTTAATTATTGATTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGGAGAATGTATTGGAACTATT</pcr_primer_p1>
		<pcr_primer_p2>ATCGATAATCTTGAGATGGAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGGAGAATGTATTGGAACTATTGCTGCTCGCTCAGAAAGACGATTTTCCTACTCTAATCTAATGAGAATCGCCTTCAAGCTTTTTTGGACGTTAGAGACACTTCACATGAAAGGGTTCTGCCACAGAGACATTCATTGGGAGAACGTACTTCTCCGAAGAGAGCGTGATGGAGTGAGTTGCCATTTCTATTTTTGGTTGTGTCATGAATAAGTTCTTCTTTCAGATTCTCCATCTCAAGATTATCGAT</canonical_amplicon>
		<polymorphic_amplicon>GAAGGAGAATGTATTGGAACTATTGCTGCTCGCTCAGAAAGACGATTTTCCTACTCTAATCTAATGAGAATCGCCTTCAAGCTTTTTTGGACGTTAGAGACACTTCACATGAAAGGGTTCTGCCACAGAGACATTCATTGGGAGAACGTACTTCTCCGAAGAGAGCGTGATGGAGTGAGTTGCCATTTCTATTTTKGGTTGTGTCATGAATAAGTTCTTCTTTCAGATTCTCCATCTCAAGATTATCGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28731</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>11727</contig_pos>
        <strand>+</strand>
        <context>ATAAGTTCTT[A/C]TTTCAGATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGGAGTGAGTTGCCATTTCTATTTTTGGTTGTGTCATGAATAAGTTCTT</left_flank>
        <right_flank>TTTCAGATTCTCCATCTCAAGATTATCGATTTCGGATTGTCACTTCCGCT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGCGCTCAAGGAAGAGCATTTTCTGTTAGGGATACAATTCTCGGAGAGAATGGTCTCATTATGAAGATGTCTTCACTTTCTGAATCTTATCAAAGAGAGCTTCTGGTCCTCAAAGCAATGACAGCACACCGAGGATTTCCATATCTCTACGATTTTTTCACGATTCCTGAAGAGCTTGGCGGAGAACATTGTTTTGGTGAGTGATTGGAGAAAATCCCTGTTGCTGTCTTATCTTAAAAACAAAAATTAAATATCTATATTTTTTCAGTTACCAATTACGAAGGAGAATGTATTGGAACTATTGCTGCTCGCTCAGAAAGACGATTTTCCTACTCTAATCTAATGAGAATCGCCTTCAAGCTTTTTTGGACGTTAGAGACACTTCACATGAAAGGGTTCTGCCACAGAGACATTCATTGGGAGAACGTACTTCTCCGAAGAGAGCGTGATGGAGTGAGTTGCCATTTCTATTTTTGGTTGTGTCATGAATAAGTTCTTCTTTCAGATTCTCCATCTCAAGATTATCGATTTCGGATTGTCACTTCCGCTAGAACCATCGCCTTCTCCAGAACAAAATCTAACTTCTTGGCATGCCAGTCTACAAGTCTGCCGAAACCAATCCTACACCAGATTCGACGATCTTACTTCGGCCATTTTCCTCGTGATGCGATTCGTTCCACTCAACCCATTTGGAGCGGAACGAAGAGAGTACCAAACATTGAAAGCAGAATTTGTTTGTGAACTCGAATGTGTTCTTTCAATGATTACTGGTATTTTTAGGATCAAGATCCTTTCGAAATATTCAACGATGAGCTGGAATGGATCGCAGGACTGTATTCCGAAGTTAGTCTTCAAAGGACCACCGGCTACTCACACACTGATCTCTTCGATATTTTCTACAAATTCAACCCTGGATTCGACCCAACAAGCCCGATCACTTACCGTATCGTTCGTAATCAGTTAATTATTGATTAATATGTTCTAAACTCCTCATAATCA</canonical>
            <polymorphic>AGGCGCTCAAGGAAGAGCATTTTCTGTTAGGGATACAATTCTCGGAGAGAATGGTCTCATTATGAAGATGTCTTCACTTTCTGAATCTTATCAAAGAGAGCTTCTGGTCCTCAAAGCAATGACAGCACACCGAGGATTTCCATATCTCTACGATTTTTTCACGATTCCTGAAGAGCTTGGCGGAGAACATTGTTTTGGTGAGTGATTGGAGAAAATCCCTGTTGCTGTCTTATCTTAAAAACAAAAATTAAATATCTATATTTTTTCAGTTACCAATTACGAAGGAGAATGTATTGGAACTATTGCTGCTCGCTCAGAAAGACGATTTTCCTACTCTAATCTAATGAGAATCGCCTTCAAGCTTTTTTGGACGTTAGAGACACTTCACATGAAAGGGTTCTGCCACAGAGACATTCATTGGGAGAACGTACTTCTCCGAAGAGAGCGTGATGGAGTGAGTTGCCATTTCTATTTTTGGTTGTGTCATGAATAAGTTCTTMTTTCAGATTCTCCATCTCAAGATTATCGATTTCGGATTGTCACTTCCGCTAGAACCATCGCCTTCTCCAGAACAAAATCTAACTTCTTGGCATGCCAGTCTACAAGTCTGCCGAAACCAATCCTACACCAGATTCGACGATCTTACTTCGGCCATTTTCCTCGTGATGCGATTCGTTCCACTCAACCCATTTGGAGCGGAACGAAGAGAGTACCAAACATTGAAAGCAGAATTTGTTTGTGAACTCGAATGTGTTCTTTCAATGATTACTGGTATTTTTAGGATCAAGATCCTTTCGAAATATTCAACGATGAGCTGGAATGGATCGCAGGACTGTATTCCGAAGTTAGTCTTCAAAGGACCACCGGCTACTCACACACTGATCTCTTCGATATTTTCTACAAATTCAACCCTGGATTCGACCCAACAAGCCCGATCACTTACCGTATCGTTCGTAATCAGTTAATTATTGATTAATATGTTCTAAACTCCTCATAATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAATGAGAATCGCCTTCAA</pcr_primer_p1>
		<pcr_primer_p2>CCAAGAAGTTAGATTTTGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAATGAGAATCGCCTTCAAGCTTTTTTGGACGTTAGAGACACTTCACATGAAAGGGTTCTGCCACAGAGACATTCATTGGGAGAACGTACTTCTCCGAAGAGAGCGTGATGGAGTGAGTTGCCATTTCTATTTTTGGTTGTGTCATGAATAAGTTCTTCTTTCAGATTCTCCATCTCAAGATTATCGATTTCGGATTGTCACTTCCGCTAGAACCATCGCCTTCTCCAGAACAAAATCTAACTTCTTGG</canonical_amplicon>
		<polymorphic_amplicon>CTAATGAGAATCGCCTTCAAGCTTTTTTGGACGTTAGAGACACTTCACATGAAAGGGTTCTGCCACAGAGACATTCATTGGGAGAACGTACTTCTCCGAAGAGAGCGTGATGGAGTGAGTTGCCATTTCTATTTTTGGTTGTGTCATGAATAAGTTCTTMTTTCAGATTCTCCATCTCAAGATTATCGATTTCGGATTGTCACTTCCGCTAGAACCATCGCCTTCTCCAGAACAAAATCTAACTTCTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28732</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>11944</contig_pos>
        <strand>+</strand>
        <context>AGAGTACCAA[A/G]CATTGAAAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCGATTCGTTCCACTCAACCCATTTGGAGCGGAACGAAGAGAGTACCAA</left_flank>
        <right_flank>CATTGAAAGCAGAATTTGTTTGTGAACTCGAATGTGTTCTTTCAATGATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGTTGCTGTCTTATCTTAAAAACAAAAATTAAATATCTATATTTTTTCAGTTACCAATTACGAAGGAGAATGTATTGGAACTATTGCTGCTCGCTCAGAAAGACGATTTTCCTACTCTAATCTAATGAGAATCGCCTTCAAGCTTTTTTGGACGTTAGAGACACTTCACATGAAAGGGTTCTGCCACAGAGACATTCATTGGGAGAACGTACTTCTCCGAAGAGAGCGTGATGGAGTGAGTTGCCATTTCTATTTTTGGTTGTGTCATGAATAAGTTCTTCTTTCAGATTCTCCATCTCAAGATTATCGATTTCGGATTGTCACTTCCGCTAGAACCATCGCCTTCTCCAGAACAAAATCTAACTTCTTGGCATGCCAGTCTACAAGTCTGCCGAAACCAATCCTACACCAGATTCGACGATCTTACTTCGGCCATTTTCCTCGTGATGCGATTCGTTCCACTCAACCCATTTGGAGCGGAACGAAGAGAGTACCAAACATTGAAAGCAGAATTTGTTTGTGAACTCGAATGTGTTCTTTCAATGATTACTGGTATTTTTAGGATCAAGATCCTTTCGAAATATTCAACGATGAGCTGGAATGGATCGCAGGACTGTATTCCGAAGTTAGTCTTCAAAGGACCACCGGCTACTCACACACTGATCTCTTCGATATTTTCTACAAATTCAACCCTGGATTCGACCCAACAAGCCCGATCACTTACCGTATCGTTCGTAATCAGTTAATTATTGATTAATATGTTCTAAACTCCTCATAATCAATGCTCCTATTTGTGTAAATATCGTCACTCTGATATTCATTTCTGTAATATTTATATATACTTTTTGTCTCAAAGACTTATAATTTTAGATATGTTTTCTAATTGCCATGAAAAATGCCGAAGTCTCTCCATATCAAACAATTCTCTCACGTGTTTCCCACCCTGTGTTTCTCATCTTCCCATCTTGTATTTTGCTCATATTCTAGCTCGGTATTTC</canonical>
            <polymorphic>CCTGTTGCTGTCTTATCTTAAAAACAAAAATTAAATATCTATATTTTTTCAGTTACCAATTACGAAGGAGAATGTATTGGAACTATTGCTGCTCGCTCAGAAAGACGATTTTCCTACTCTAATCTAATGAGAATCGCCTTCAAGCTTTTTTGGACGTTAGAGACACTTCACATGAAAGGGTTCTGCCACAGAGACATTCATTGGGAGAACGTACTTCTCCGAAGAGAGCGTGATGGAGTGAGTTGCCATTTCTATTTTTGGTTGTGTCATGAATAAGTTCTTCTTTCAGATTCTCCATCTCAAGATTATCGATTTCGGATTGTCACTTCCGCTAGAACCATCGCCTTCTCCAGAACAAAATCTAACTTCTTGGCATGCCAGTCTACAAGTCTGCCGAAACCAATCCTACACCAGATTCGACGATCTTACTTCGGCCATTTTCCTCGTGATGCGATTCGTTCCACTCAACCCATTTGGAGCGGAACGAAGAGAGTACCAARCATTGAAAGCAGAATTTGTTTGTGAACTCGAATGTGTTCTTTCAATGATTACTGGTATTTTTAGGATCAAGATCCTTTCGAAATATTCAACGATGAGCTGGAATGGATCGCAGGACTGTATTCCGAAGTTAGTCTTCAAAGGACCACCGGCTACTCACACACTGATCTCTTCGATATTTTCTACAAATTCAACCCTGGATTCGACCCAACAAGCCCGATCACTTACCGTATCGTTCGTAATCAGTTAATTATTGATTAATATGTTCTAAACTCCTCATAATCAATGCTCCTATTTGTGTAAATATCGTCACTCTGATATTCATTTCTGTAATATTTATATATACTTTTTGTCTCAAAGACTTATAATTTTAGATATGTTTTCTAATTGCCATGAAAAATGCCGAAGTCTCTCCATATCAAACAATTCTCTCACGTGTTTCCCACCCTGTGTTTCTCATCTTCCCATCTTGTATTTTGCTCATATTCTAGCTCGGTATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACCAATCCTACACCAGAT</pcr_primer_p1>
		<pcr_primer_p2>CTTTGAAGACTAACTTCGGAATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAACCAATCCTACACCAGATTCGACGATCTTACTTCGGCCATTTTCCTCGTGATGCGATTCGTTCCACTCAACCCATTTGGAGCGGAACGAAGAGAGTACCAAACATTGAAAGCAGAATTTGTTTGTGAACTCGAATGTGTTCTTTCAATGATTACTGGTATTTTTAGGATCAAGATCCTTTCGAAATATTCAACGATGAGCTGGAATGGATCGCAGGACTGTATTCCGAAGTTAGTCTTCAAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAACCAATCCTACACCAGATTCGACGATCTTACTTCGGCCATTTTCCTCGTGATGCGATTCGTTCCACTCAACCCATTTGGAGCGGAACGAAGAGAGTACCAARCATTGAAAGCAGAATTTGTTTGTGAACTCGAATGTGTTCTTTCAATGATTACTGGTATTTTTAGGATCAAGATCCTTTCGAAATATTCAACGATGAGCTGGAATGGATCGCAGGACTGTATTCCGAAGTTAGTCTTCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28733</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>11999</contig_pos>
        <strand>+</strand>
        <context>ATGATTACTG[G/T]TATTTTTAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAAGCAGAATTTGTTTGTGAACTCGAATGTGTTCTTTCAATGATTACTG</left_flank>
        <right_flank>TATTTTTAGGATCAAGATCCTTTCGAAATATTCAACGATGAGCTGGAATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAATTACGAAGGAGAATGTATTGGAACTATTGCTGCTCGCTCAGAAAGACGATTTTCCTACTCTAATCTAATGAGAATCGCCTTCAAGCTTTTTTGGACGTTAGAGACACTTCACATGAAAGGGTTCTGCCACAGAGACATTCATTGGGAGAACGTACTTCTCCGAAGAGAGCGTGATGGAGTGAGTTGCCATTTCTATTTTTGGTTGTGTCATGAATAAGTTCTTCTTTCAGATTCTCCATCTCAAGATTATCGATTTCGGATTGTCACTTCCGCTAGAACCATCGCCTTCTCCAGAACAAAATCTAACTTCTTGGCATGCCAGTCTACAAGTCTGCCGAAACCAATCCTACACCAGATTCGACGATCTTACTTCGGCCATTTTCCTCGTGATGCGATTCGTTCCACTCAACCCATTTGGAGCGGAACGAAGAGAGTACCAAACATTGAAAGCAGAATTTGTTTGTGAACTCGAATGTGTTCTTTCAATGATTACTGGTATTTTTAGGATCAAGATCCTTTCGAAATATTCAACGATGAGCTGGAATGGATCGCAGGACTGTATTCCGAAGTTAGTCTTCAAAGGACCACCGGCTACTCACACACTGATCTCTTCGATATTTTCTACAAATTCAACCCTGGATTCGACCCAACAAGCCCGATCACTTACCGTATCGTTCGTAATCAGTTAATTATTGATTAATATGTTCTAAACTCCTCATAATCAATGCTCCTATTTGTGTAAATATCGTCACTCTGATATTCATTTCTGTAATATTTATATATACTTTTTGTCTCAAAGACTTATAATTTTAGATATGTTTTCTAATTGCCATGAAAAATGCCGAAGTCTCTCCATATCAAACAATTCTCTCACGTGTTTCCCACCCTGTGTTTCTCATCTTCCCATCTTGTATTTTGCTCATATTCTAGCTCGGTATTTCTGTTATGATAATCAAATTCCATATCCTAGTAATTTCCCATCAACGTGTCTTTCAC</canonical>
            <polymorphic>CCAATTACGAAGGAGAATGTATTGGAACTATTGCTGCTCGCTCAGAAAGACGATTTTCCTACTCTAATCTAATGAGAATCGCCTTCAAGCTTTTTTGGACGTTAGAGACACTTCACATGAAAGGGTTCTGCCACAGAGACATTCATTGGGAGAACGTACTTCTCCGAAGAGAGCGTGATGGAGTGAGTTGCCATTTCTATTTTTGGTTGTGTCATGAATAAGTTCTTCTTTCAGATTCTCCATCTCAAGATTATCGATTTCGGATTGTCACTTCCGCTAGAACCATCGCCTTCTCCAGAACAAAATCTAACTTCTTGGCATGCCAGTCTACAAGTCTGCCGAAACCAATCCTACACCAGATTCGACGATCTTACTTCGGCCATTTTCCTCGTGATGCGATTCGTTCCACTCAACCCATTTGGAGCGGAACGAAGAGAGTACCAAACATTGAAAGCAGAATTTGTTTGTGAACTCGAATGTGTTCTTTCAATGATTACTGKTATTTTTAGGATCAAGATCCTTTCGAAATATTCAACGATGAGCTGGAATGGATCGCAGGACTGTATTCCGAAGTTAGTCTTCAAAGGACCACCGGCTACTCACACACTGATCTCTTCGATATTTTCTACAAATTCAACCCTGGATTCGACCCAACAAGCCCGATCACTTACCGTATCGTTCGTAATCAGTTAATTATTGATTAATATGTTCTAAACTCCTCATAATCAATGCTCCTATTTGTGTAAATATCGTCACTCTGATATTCATTTCTGTAATATTTATATATACTTTTTGTCTCAAAGACTTATAATTTTAGATATGTTTTCTAATTGCCATGAAAAATGCCGAAGTCTCTCCATATCAAACAATTCTCTCACGTGTTTCCCACCCTGTGTTTCTCATCTTCCCATCTTGTATTTTGCTCATATTCTAGCTCGGTATTTCTGTTATGATAATCAAATTCCATATCCTAGTAATTTCCCATCAACGTGTCTTTCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGCAGAATTTGTTTGTGA</pcr_primer_p1>
		<pcr_primer_p2>ATTAACTGATTACGAACGATACG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAAAGCAGAATTTGTTTGTGAACTCGAATGTGTTCTTTCAATGATTACTGGTATTTTTAGGATCAAGATCCTTTCGAAATATTCAACGATGAGCTGGAATGGATCGCAGGACTGTATTCCGAAGTTAGTCTTCAAAGGACCACCGGCTACTCACACACTGATCTCTTCGATATTTTCTACAAATTCAACCCTGGATTCGACCCAACAAGCCCGATCACTTACCGTATCGTTCGTAATCAGTTAAT</canonical_amplicon>
		<polymorphic_amplicon>GAAAGCAGAATTTGTTTGTGAACTCGAATGTGTTCTTTCAATGATTACTGKTATTTTTAGGATCAAGATCCTTTCGAAATATTCAACGATGAGCTGGAATGGATCGCAGGACTGTATTCCGAAGTTAGTCTTCAAAGGACCACCGGCTACTCACACACTGATCTCTTCGATATTTTCTACAAATTCAACCCTGGATTCGACCCAACAAGCCCGATCACTTACCGTATCGTTCGTAATCAGTTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28734</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>12026</contig_pos>
        <strand>+</strand>
        <context>ATCCTTTCGA[A/T]ATATTCAACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGTGTTCTTTCAATGATTACTGGTATTTTTAGGATCAAGATCCTTTCGA</left_flank>
        <right_flank>ATATTCAACGATGAGCTGGAATGGATCGCAGGACTGTATTCCGAAGTTAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATTGCTGCTCGCTCAGAAAGACGATTTTCCTACTCTAATCTAATGAGAATCGCCTTCAAGCTTTTTTGGACGTTAGAGACACTTCACATGAAAGGGTTCTGCCACAGAGACATTCATTGGGAGAACGTACTTCTCCGAAGAGAGCGTGATGGAGTGAGTTGCCATTTCTATTTTTGGTTGTGTCATGAATAAGTTCTTCTTTCAGATTCTCCATCTCAAGATTATCGATTTCGGATTGTCACTTCCGCTAGAACCATCGCCTTCTCCAGAACAAAATCTAACTTCTTGGCATGCCAGTCTACAAGTCTGCCGAAACCAATCCTACACCAGATTCGACGATCTTACTTCGGCCATTTTCCTCGTGATGCGATTCGTTCCACTCAACCCATTTGGAGCGGAACGAAGAGAGTACCAAACATTGAAAGCAGAATTTGTTTGTGAACTCGAATGTGTTCTTTCAATGATTACTGGTATTTTTAGGATCAAGATCCTTTCGAAATATTCAACGATGAGCTGGAATGGATCGCAGGACTGTATTCCGAAGTTAGTCTTCAAAGGACCACCGGCTACTCACACACTGATCTCTTCGATATTTTCTACAAATTCAACCCTGGATTCGACCCAACAAGCCCGATCACTTACCGTATCGTTCGTAATCAGTTAATTATTGATTAATATGTTCTAAACTCCTCATAATCAATGCTCCTATTTGTGTAAATATCGTCACTCTGATATTCATTTCTGTAATATTTATATATACTTTTTGTCTCAAAGACTTATAATTTTAGATATGTTTTCTAATTGCCATGAAAAATGCCGAAGTCTCTCCATATCAAACAATTCTCTCACGTGTTTCCCACCCTGTGTTTCTCATCTTCCCATCTTGTATTTTGCTCATATTCTAGCTCGGTATTTCTGTTATGATAATCAAATTCCATATCCTAGTAATTTCCCATCAACGTGTCTTTCACTCATATCAATTGTATACTTTCCTAAAA</canonical>
            <polymorphic>CTATTGCTGCTCGCTCAGAAAGACGATTTTCCTACTCTAATCTAATGAGAATCGCCTTCAAGCTTTTTTGGACGTTAGAGACACTTCACATGAAAGGGTTCTGCCACAGAGACATTCATTGGGAGAACGTACTTCTCCGAAGAGAGCGTGATGGAGTGAGTTGCCATTTCTATTTTTGGTTGTGTCATGAATAAGTTCTTCTTTCAGATTCTCCATCTCAAGATTATCGATTTCGGATTGTCACTTCCGCTAGAACCATCGCCTTCTCCAGAACAAAATCTAACTTCTTGGCATGCCAGTCTACAAGTCTGCCGAAACCAATCCTACACCAGATTCGACGATCTTACTTCGGCCATTTTCCTCGTGATGCGATTCGTTCCACTCAACCCATTTGGAGCGGAACGAAGAGAGTACCAAACATTGAAAGCAGAATTTGTTTGTGAACTCGAATGTGTTCTTTCAATGATTACTGGTATTTTTAGGATCAAGATCCTTTCGAWATATTCAACGATGAGCTGGAATGGATCGCAGGACTGTATTCCGAAGTTAGTCTTCAAAGGACCACCGGCTACTCACACACTGATCTCTTCGATATTTTCTACAAATTCAACCCTGGATTCGACCCAACAAGCCCGATCACTTACCGTATCGTTCGTAATCAGTTAATTATTGATTAATATGTTCTAAACTCCTCATAATCAATGCTCCTATTTGTGTAAATATCGTCACTCTGATATTCATTTCTGTAATATTTATATATACTTTTTGTCTCAAAGACTTATAATTTTAGATATGTTTTCTAATTGCCATGAAAAATGCCGAAGTCTCTCCATATCAAACAATTCTCTCACGTGTTTCCCACCCTGTGTTTCTCATCTTCCCATCTTGTATTTTGCTCATATTCTAGCTCGGTATTTCTGTTATGATAATCAAATTCCATATCCTAGTAATTTCCCATCAACGTGTCTTTCACTCATATCAATTGTATACTTTCCTAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 250 248</canonical_bands>
                <polymorphic_bands>750 250</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCAGAATTTGTTTGTGAACT</pcr_primer_p1>
		<pcr_primer_p2>ATTAACTGATTACGAACGATACG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAGCAGAATTTGTTTGTGAACTCGAATGTGTTCTTTCAATGATTACTGGTATTTTTAGGATCAAGATCCTTTCGAAATATTCAACGATGAGCTGGAATGGATCGCAGGACTGTATTCCGAAGTTAGTCTTCAAAGGACCACCGGCTACTCACACACTGATCTCTTCGATATTTTCTACAAATTCAACCCTGGATTCGACCCAACAAGCCCGATCACTTACCGTATCGTTCGTAATCAGTTAAT</canonical_amplicon>
		<polymorphic_amplicon>AAGCAGAATTTGTTTGTGAACTCGAATGTGTTCTTTCAATGATTACTGGTATTTTTAGGATCAAGATCCTTTCGAWATATTCAACGATGAGCTGGAATGGATCGCAGGACTGTATTCCGAAGTTAGTCTTCAAAGGACCACCGGCTACTCACACACTGATCTCTTCGATATTTTCTACAAATTCAACCCTGGATTCGACCCAACAAGCCCGATCACTTACCGTATCGTTCGTAATCAGTTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28735</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>12046</contig_pos>
        <strand>+</strand>
        <context>GATGAGCTGG[A/G]ATGGATCGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGGTATTTTTAGGATCAAGATCCTTTCGAAATATTCAACGATGAGCTGG</left_flank>
        <right_flank>ATGGATCGCAGGACTGTATTCCGAAGTTAGTCTTCAAAGGACCACCGGCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACGATTTTCCTACTCTAATCTAATGAGAATCGCCTTCAAGCTTTTTTGGACGTTAGAGACACTTCACATGAAAGGGTTCTGCCACAGAGACATTCATTGGGAGAACGTACTTCTCCGAAGAGAGCGTGATGGAGTGAGTTGCCATTTCTATTTTTGGTTGTGTCATGAATAAGTTCTTCTTTCAGATTCTCCATCTCAAGATTATCGATTTCGGATTGTCACTTCCGCTAGAACCATCGCCTTCTCCAGAACAAAATCTAACTTCTTGGCATGCCAGTCTACAAGTCTGCCGAAACCAATCCTACACCAGATTCGACGATCTTACTTCGGCCATTTTCCTCGTGATGCGATTCGTTCCACTCAACCCATTTGGAGCGGAACGAAGAGAGTACCAAACATTGAAAGCAGAATTTGTTTGTGAACTCGAATGTGTTCTTTCAATGATTACTGGTATTTTTAGGATCAAGATCCTTTCGAAATATTCAACGATGAGCTGGAATGGATCGCAGGACTGTATTCCGAAGTTAGTCTTCAAAGGACCACCGGCTACTCACACACTGATCTCTTCGATATTTTCTACAAATTCAACCCTGGATTCGACCCAACAAGCCCGATCACTTACCGTATCGTTCGTAATCAGTTAATTATTGATTAATATGTTCTAAACTCCTCATAATCAATGCTCCTATTTGTGTAAATATCGTCACTCTGATATTCATTTCTGTAATATTTATATATACTTTTTGTCTCAAAGACTTATAATTTTAGATATGTTTTCTAATTGCCATGAAAAATGCCGAAGTCTCTCCATATCAAACAATTCTCTCACGTGTTTCCCACCCTGTGTTTCTCATCTTCCCATCTTGTATTTTGCTCATATTCTAGCTCGGTATTTCTGTTATGATAATCAAATTCCATATCCTAGTAATTTCCCATCAACGTGTCTTTCACTCATATCAATTGTATACTTTCCTAAAAAGAAATACAATTTAATAATG</canonical>
            <polymorphic>AGACGATTTTCCTACTCTAATCTAATGAGAATCGCCTTCAAGCTTTTTTGGACGTTAGAGACACTTCACATGAAAGGGTTCTGCCACAGAGACATTCATTGGGAGAACGTACTTCTCCGAAGAGAGCGTGATGGAGTGAGTTGCCATTTCTATTTTTGGTTGTGTCATGAATAAGTTCTTCTTTCAGATTCTCCATCTCAAGATTATCGATTTCGGATTGTCACTTCCGCTAGAACCATCGCCTTCTCCAGAACAAAATCTAACTTCTTGGCATGCCAGTCTACAAGTCTGCCGAAACCAATCCTACACCAGATTCGACGATCTTACTTCGGCCATTTTCCTCGTGATGCGATTCGTTCCACTCAACCCATTTGGAGCGGAACGAAGAGAGTACCAAACATTGAAAGCAGAATTTGTTTGTGAACTCGAATGTGTTCTTTCAATGATTACTGGTATTTTTAGGATCAAGATCCTTTCGAAATATTCAACGATGAGCTGGRATGGATCGCAGGACTGTATTCCGAAGTTAGTCTTCAAAGGACCACCGGCTACTCACACACTGATCTCTTCGATATTTTCTACAAATTCAACCCTGGATTCGACCCAACAAGCCCGATCACTTACCGTATCGTTCGTAATCAGTTAATTATTGATTAATATGTTCTAAACTCCTCATAATCAATGCTCCTATTTGTGTAAATATCGTCACTCTGATATTCATTTCTGTAATATTTATATATACTTTTTGTCTCAAAGACTTATAATTTTAGATATGTTTTCTAATTGCCATGAAAAATGCCGAAGTCTCTCCATATCAAACAATTCTCTCACGTGTTTCCCACCCTGTGTTTCTCATCTTCCCATCTTGTATTTTGCTCATATTCTAGCTCGGTATTTCTGTTATGATAATCAAATTCCATATCCTAGTAATTTCCCATCAACGTGTCTTTCACTCATATCAATTGTATACTTTCCTAAAAAGAAATACAATTTAATAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCAGAATTTGTTTGTGAACT</pcr_primer_p1>
		<pcr_primer_p2>ATTAACTGATTACGAACGATACG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAGCAGAATTTGTTTGTGAACTCGAATGTGTTCTTTCAATGATTACTGGTATTTTTAGGATCAAGATCCTTTCGAAATATTCAACGATGAGCTGGAATGGATCGCAGGACTGTATTCCGAAGTTAGTCTTCAAAGGACCACCGGCTACTCACACACTGATCTCTTCGATATTTTCTACAAATTCAACCCTGGATTCGACCCAACAAGCCCGATCACTTACCGTATCGTTCGTAATCAGTTAAT</canonical_amplicon>
		<polymorphic_amplicon>AAGCAGAATTTGTTTGTGAACTCGAATGTGTTCTTTCAATGATTACTGGTATTTTTAGGATCAAGATCCTTTCGAAATATTCAACGATGAGCTGGRATGGATCGCAGGACTGTATTCCGAAGTTAGTCTTCAAAGGACCACCGGCTACTCACACACTGATCTCTTCGATATTTTCTACAAATTCAACCCTGGATTCGACCCAACAAGCCCGATCACTTACCGTATCGTTCGTAATCAGTTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28736</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>12197</contig_pos>
        <strand>+</strand>
        <context>AGTTAATTAT[C/T]GATTAATATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACCCAACAAGCCCGATCACTTACCGTATCGTTCGTAATCAGTTAATTAT</left_flank>
        <right_flank>GATTAATATGTTCTAAACTCCTCATAATCAATGCTCCTATTTGTGTAAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTGGTTGTGTCATGAATAAGTTCTTCTTTCAGATTCTCCATCTCAAGATTATCGATTTCGGATTGTCACTTCCGCTAGAACCATCGCCTTCTCCAGAACAAAATCTAACTTCTTGGCATGCCAGTCTACAAGTCTGCCGAAACCAATCCTACACCAGATTCGACGATCTTACTTCGGCCATTTTCCTCGTGATGCGATTCGTTCCACTCAACCCATTTGGAGCGGAACGAAGAGAGTACCAAACATTGAAAGCAGAATTTGTTTGTGAACTCGAATGTGTTCTTTCAATGATTACTGGTATTTTTAGGATCAAGATCCTTTCGAAATATTCAACGATGAGCTGGAATGGATCGCAGGACTGTATTCCGAAGTTAGTCTTCAAAGGACCACCGGCTACTCACACACTGATCTCTTCGATATTTTCTACAAATTCAACCCTGGATTCGACCCAACAAGCCCGATCACTTACCGTATCGTTCGTAATCAGTTAATTATTGATTAATATGTTCTAAACTCCTCATAATCAATGCTCCTATTTGTGTAAATATCGTCACTCTGATATTCATTTCTGTAATATTTATATATACTTTTTGTCTCAAAGACTTATAATTTTAGATATGTTTTCTAATTGCCATGAAAAATGCCGAAGTCTCTCCATATCAAACAATTCTCTCACGTGTTTCCCACCCTGTGTTTCTCATCTTCCCATCTTGTATTTTGCTCATATTCTAGCTCGGTATTTCTGTTATGATAATCAAATTCCATATCCTAGTAATTTCCCATCAACGTGTCTTTCACTCATATCAATTGTATACTTTCCTAAAAAGAAATACAATTTAATAATGATATATTTTGTTGCAAGCAGAACGTGACACAATAATCATAATCTATTTGTCAAATTATGAAACAACACACTATTTTCATTACAAAGCACCTAAAATGCGCCAAGTCTCAGAAAATGAGCCTACACAACGAATCGCAGTCCCGGCACCGGAA</canonical>
            <polymorphic>ATTTTTGGTTGTGTCATGAATAAGTTCTTCTTTCAGATTCTCCATCTCAAGATTATCGATTTCGGATTGTCACTTCCGCTAGAACCATCGCCTTCTCCAGAACAAAATCTAACTTCTTGGCATGCCAGTCTACAAGTCTGCCGAAACCAATCCTACACCAGATTCGACGATCTTACTTCGGCCATTTTCCTCGTGATGCGATTCGTTCCACTCAACCCATTTGGAGCGGAACGAAGAGAGTACCAAACATTGAAAGCAGAATTTGTTTGTGAACTCGAATGTGTTCTTTCAATGATTACTGGTATTTTTAGGATCAAGATCCTTTCGAAATATTCAACGATGAGCTGGAATGGATCGCAGGACTGTATTCCGAAGTTAGTCTTCAAAGGACCACCGGCTACTCACACACTGATCTCTTCGATATTTTCTACAAATTCAACCCTGGATTCGACCCAACAAGCCCGATCACTTACCGTATCGTTCGTAATCAGTTAATTATYGATTAATATGTTCTAAACTCCTCATAATCAATGCTCCTATTTGTGTAAATATCGTCACTCTGATATTCATTTCTGTAATATTTATATATACTTTTTGTCTCAAAGACTTATAATTTTAGATATGTTTTCTAATTGCCATGAAAAATGCCGAAGTCTCTCCATATCAAACAATTCTCTCACGTGTTTCCCACCCTGTGTTTCTCATCTTCCCATCTTGTATTTTGCTCATATTCTAGCTCGGTATTTCTGTTATGATAATCAAATTCCATATCCTAGTAATTTCCCATCAACGTGTCTTTCACTCATATCAATTGTATACTTTCCTAAAAAGAAATACAATTTAATAATGATATATTTTGTTGCAAGCAGAACGTGACACAATAATCATAATCTATTTGTCAAATTATGAAACAACACACTATTTTCATTACAAAGCACCTAAAATGCGCCAAGTCTCAGAAAATGAGCCTACACAACGAATCGCAGTCCCGGCACCGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTACTCACACACTGATCTCTTC</pcr_primer_p1>
		<pcr_primer_p2>TCATGGCAATTAGAAAACATATC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GCTACTCACACACTGATCTCTTCGATATTTTCTACAAATTCAACCCTGGATTCGACCCAACAAGCCCGATCACTTACCGTATCGTTCGTAATCAGTTAATTATTGATTAATATGTTCTAAACTCCTCATAATCAATGCTCCTATTTGTGTAAATATCGTCACTCTGATATTCATTTCTGTAATATTTATATATACTTTTTGTCTCAAAGACTTATAATTTTAGATATGTTTTCTAATTGCCATGA</canonical_amplicon>
		<polymorphic_amplicon>GCTACTCACACACTGATCTCTTCGATATTTTCTACAAATTCAACCCTGGATTCGACCCAACAAGCCCGATCACTTACCGTATCGTTCGTAATCAGTTAATTATYGATTAATATGTTCTAAACTCCTCATAATCAATGCTCCTATTTGTGTAAATATCGTCACTCTGATATTCATTTCTGTAATATTTATATATACTTTTTGTCTCAAAGACTTATAATTTTAGATATGTTTTCTAATTGCCATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28737</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>19948</contig_pos>
        <strand>+</strand>
        <context>ACCGAGCCAA[C/T]WTCGGACGCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAA</left_flank>
        <right_flank>TTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAGCACCCAGGTACCCAATCCGTCCCAAGCAGCCGAAGCCCCGCACTTGCCCTCGCCATCCATCTCCAGCAAATGAGCTCCTCACGAAAAAGGGAAAGAGGTCCGCTACAGAAAAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGA</canonical>
            <polymorphic>TGGAGCACCCAGGTACCCAATCCGTCCCAAGCAGCCGAAGCCCCGCACTTGCCCTCGCCATCCATCTCCAGCAAATGAGCTCCTCACGAAAAAGGGAAAGAGGTCCGCTACAGAAAAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAAYTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>324 292 126 74 54 47 32 14 11 11 8 7</canonical_bands>
                <polymorphic_bands>418 324 74 54 47 32 14 11 11 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTCGATTTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTACATATACATTGAGTCGATCC</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAAYTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28738</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>19949</contig_pos>
        <strand>+</strand>
        <context>CCGAGCCAAY[A/T]TCGGACGCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAAT</left_flank>
        <right_flank>TCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGCACCCAGGTACCCAATCCGTCCCAAGCAGCCGAAGCCCCGCACTTGCCCTCGCCATCCATCTCCAGCAAATGAGCTCCTCACGAAAAAGGGAAAGAGGTCCGCTACAGAAAAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGAC</canonical>
            <polymorphic>GGAGCACCCAGGTACCCAATCCGTCCCAAGCAGCCGAAGCCCCGCACTTGCCCTCGCCATCCATCTCCAGCAAATGAGCTCCTCACGAAAAAGGGAAAGAGGTCCGCTACAGAAAAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATWTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>323 292 126 74 54 47 33 14 11 11 8 7</canonical_bands>
                <polymorphic_bands>418 323 74 54 47 33 14 11 11 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTCGATTTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTACATATACATTGAGTCGATCC</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATWTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28739</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>19978</contig_pos>
        <strand>+</strand>
        <context>GGCGTAGCGG[C/T]GKAGTAGCAR</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGG</left_flank>
        <right_flank>GCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAGCCGAAGCCCCGCACTTGCCCTCGCCATCCATCTCCAGCAAATGAGCTCCTCACGAAAAAGGGAAAGAGGTCCGCTACAGAAAAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATT</canonical>
            <polymorphic>GCAGCCGAAGCCCCGCACTTGCCCTCGCCATCCATCTCCAGCAAATGAGCTCCTCACGAAAAAGGGAAAGAGGTCCGCTACAGAAAAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGYGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 377 122</canonical_bands>
                <polymorphic_bands>878 122</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>433 377 124 62 4</canonical_bands>
                <polymorphic_bands>439 433 124 4</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>499 377 124</canonical_bands>
                <polymorphic_bands>876 124</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTCGATTTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTACATATACATTGAGTCGATCC</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGYGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28740</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>19980</contig_pos>
        <strand>+</strand>
        <context>CGTAGCGGYG[G/T]AGTAGCARCA</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCG</left_flank>
        <right_flank>AGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCCGAAGCCCCGCACTTGCCCTCGCCATCCATCTCCAGCAAATGAGCTCCTCACGAAAAAGGGAAAGAGGTCCGCTACAGAAAAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCA</canonical>
            <polymorphic>AGCCGAAGCCCCGCACTTGCCCTCGCCATCCATCTCCAGCAAATGAGCTCCTCACGAAAAAGGGAAAGAGGTCCGCTACAGAAAAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGKAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>499 377 124</canonical_bands>
                <polymorphic_bands>876 124</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTCGATTTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTACATATACATTGAGTCGATCC</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGKAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28741</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>19988</contig_pos>
        <strand>+</strand>
        <context>YGKAGTAGCA[A/G]CARCAGAGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCA</left_flank>
        <right_flank>CAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCCGCACTTGCCCTCGCCATCCATCTCCAGCAAATGAGCTCCTCACGAAAAAGGGAAAGAGGTCCGCTACAGAAAAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATG</canonical>
            <polymorphic>CCCCGCACTTGCCCTCGCCATCCATCTCCAGCAAATGAGCTCCTCACGAAAAAGGGAAAGAGGTCCGCTACAGAAAAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCARCAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTCGATTTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTACATATACATTGAGTCGATCC</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCARCAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28742</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>19991</contig_pos>
        <strand>+</strand>
        <context>AGTAGCARCA[A/G]CAGAGAGACR</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACA</left_flank>
        <right_flank>CAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCACTTGCCCTCGCCATCCATCTCCAGCAAATGAGCTCCTCACGAAAAAGGGAAAGAGGTCCGCTACAGAAAAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTAT</canonical>
            <polymorphic>CGCACTTGCCCTCGCCATCCATCTCCAGCAAATGAGCTCCTCACGAAAAAGGGAAAGAGGTCCGCTACAGAAAAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACARCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTCGATTTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTACATATACATTGAGTCGATCC</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACARCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28743</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>20001</contig_pos>
        <strand>+</strand>
        <context>RCAGAGAGAC[A/G]CAKTGGTGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGAC</left_flank>
        <right_flank>CATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGCCATCCATCTCCAGCAAATGAGCTCCTCACGAAAAAGGGAAAGAGGTCCGCTACAGAAAAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATA</canonical>
            <polymorphic>CTCGCCATCCATCTCCAGCAAATGAGCTCCTCACGAAAAAGGGAAAGAGGTCCGCTACAGAAAAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACRCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTCGATTTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTACATATACATTGAGTCGATCC</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACRCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28744</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>20004</contig_pos>
        <strand>+</strand>
        <context>GAGAGACRCA[G/T]TGGTGATRGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCA</left_flank>
        <right_flank>TGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCATCCATCTCCAGCAAATGAGCTCCTCACGAAAAAGGGAAAGAGGTCCGCTACAGAAAAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATAC</canonical>
            <polymorphic>GCCATCCATCTCCAGCAAATGAGCTCCTCACGAAAAAGGGAAAGAGGTCCGCTACAGAAAAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCAKTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTCGATTTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTACATATACATTGAGTCGATCC</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCAKTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28745</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>20012</contig_pos>
        <strand>+</strand>
        <context>CAKTGGTGAT[A/G]GTSGGTGTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGAT</left_flank>
        <right_flank>GTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCCAGCAAATGAGCTCCTCACGAAAAAGGGAAAGAGGTCCGCTACAGAAAAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATA</canonical>
            <polymorphic>TCTCCAGCAAATGAGCTCCTCACGAAAAAGGGAAAGAGGTCCGCTACAGAAAAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATRGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTCGATTTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTACATATACATTGAGTCGATCC</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATRGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28746</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>20015</contig_pos>
        <strand>+</strand>
        <context>TGGTGATRGT[C/G]GGTGTCAKGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGT</left_flank>
        <right_flank>GGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGCAAATGAGCTCCTCACGAAAAAGGGAAAGAGGTCCGCTACAGAAAAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCT</canonical>
            <polymorphic>CCAGCAAATGAGCTCCTCACGAAAAAGGGAAAGAGGTCCGCTACAGAAAAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTSGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTCGATTTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTACATATACATTGAGTCGATCC</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTSGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28747</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>20023</contig_pos>
        <strand>+</strand>
        <context>GTSGGTGTCA[G/T]GTTACATTYT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCA</left_flank>
        <right_flank>GTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGCTCCTCACGAAAAAGGGAAAGAGGTCCGCTACAGAAAAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGT</canonical>
            <polymorphic>TGAGCTCCTCACGAAAAAGGGAAAGAGGTCCGCTACAGAAAAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCAKGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>418 259 170 84 69</canonical_bands>
                <polymorphic_bands>418 343 170 69</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTCGATTTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTACATATACATTGAGTCGATCC</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCAKGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28748</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>20032</contig_pos>
        <strand>+</strand>
        <context>AKGTTACATT[C/T]TGGTGGKAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATT</left_flank>
        <right_flank>TGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACGAAAAAGGGAAAGAGGTCCGCTACAGAAAAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCAC</canonical>
            <polymorphic>CACGAAAAAGGGAAAGAGGTCCGCTACAGAAAAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTYTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTCGATTTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTACATATACATTGAGTCGATCC</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTYTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28749</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>20039</contig_pos>
        <strand>+</strand>
        <context>ATTYTGGTGG[G/T]AGCGAMCACA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGG</left_flank>
        <right_flank>AGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGGAAAGAGGTCCGCTACAGAAAAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTT</canonical>
            <polymorphic>AAGGGAAAGAGGTCCGCTACAGAAAAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGKAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTCGATTTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTACATATACATTGAGTCGATCC</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGKAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28750</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>20045</contig_pos>
        <strand>+</strand>
        <context>GTGGKAGCGA[A/C]CACAGGSAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGA</left_flank>
        <right_flank>CACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAGGTCCGCTACAGAAAAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTA</canonical>
            <polymorphic>AAGAGGTCCGCTACAGAAAAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAMCACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTCGATTTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTACATATACATTGAGTCGATCC</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAMCACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28751</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>20052</contig_pos>
        <strand>+</strand>
        <context>CGAMCACAGG[C/G]AGAGACTGAW</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGG</left_flank>
        <right_flank>AGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGCTACAGAAAAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACAT</canonical>
            <polymorphic>CCGCTACAGAAAAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGSAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTCGATTTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTACATATACATTGAGTCGATCC</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGSAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28752</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>20062</contig_pos>
        <strand>+</strand>
        <context>SAGAGACTGA[A/T]MRAAATYRGG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGA</left_flank>
        <right_flank>AGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTAC</canonical>
            <polymorphic>AAAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGAWAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTCGATTTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTACATATACATTGAGTCGATCC</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGAWAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28753</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>20063</contig_pos>
        <strand>+</strand>
        <context>AGAGACTGAW[A/C]RAAATYRGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGAC</left_flank>
        <right_flank>GAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTACA</canonical>
            <polymorphic>AAACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACMGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTCGATTTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTACATATACATTGAGTCGATCC</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACMGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28754</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>20064</contig_pos>
        <strand>+</strand>
        <context>GAGACTGAWM[A/G]AAATYRGGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACA</left_flank>
        <right_flank>AAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTACAA</canonical>
            <polymorphic>AACATAAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACARAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTCGATTTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTACATATACATTGAGTCGATCC</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACARAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28755</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>20069</contig_pos>
        <strand>+</strand>
        <context>TGAWMRAAAT[C/T]RGGAGAATCA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAAT</left_flank>
        <right_flank>AGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTACAACTACA</canonical>
            <polymorphic>AAGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATYAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTACAACTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTCGATTTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTACATATACATTGAGTCGATCC</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATYAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28756</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>20070</contig_pos>
        <strand>+</strand>
        <context>GAWMRAAATY[A/G]GGAGAATCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATG</left_flank>
        <right_flank>GGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTACAACTACAT</canonical>
            <polymorphic>AGAGCAGTAGATGATAGAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGRGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTACAACTACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTCGATTTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTACATATACATTGAGTCGATCC</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGRGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28757</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>20086</contig_pos>
        <strand>+</strand>
        <context>ATCAGAGAAG[C/G]AGACGYYTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAG</left_flank>
        <right_flank>AGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTACAACTACATCGATATCTGCATCTTG</canonical>
            <polymorphic>GAAAATGTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGSAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTACAACTACATCGATATCTGCATCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTCGATTTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTACATATACATTGAGTCGATCC</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGSAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28758</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>20092</contig_pos>
        <strand>+</strand>
        <context>GAAGSAGACG[C/T]YTGACAGTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACG</left_flank>
        <right_flank>TTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTACAACTACATCGATATCTGCATCTTGATACCT</canonical>
            <polymorphic>GTGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGYTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTACAACTACATCGATATCTGCATCTTGATACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTCGATTTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTACATATACATTGAGTCGATCC</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGYTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28759</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>20093</contig_pos>
        <strand>+</strand>
        <context>AAGSAGACGY[C/T]TGACAGTCCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGC</left_flank>
        <right_flank>TGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTACAACTACATCGATATCTGCATCTTGATACCTT</canonical>
            <polymorphic>TGAAAAAGAATAGTTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCYTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTACAACTACATCGATATCTGCATCTTGATACCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTCGATTTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTACATATACATTGAGTCGATCC</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCYTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28760</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>20106</contig_pos>
        <strand>+</strand>
        <context>ACAGTCCCTC[A/G]TGTYCCTCGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTC</left_flank>
        <right_flank>TGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTACAACTACATCGATATCTGCATCTTGATACCTTTATTTTCCATTTA</canonical>
            <polymorphic>TTCATTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCRTGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTACAACTACATCGATATCTGCATCTTGATACCTTTATTTTCCATTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 259 87 84 69</canonical_bands>
                <polymorphic_bands>585 259 87 69</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTCGATTTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTACATATACATTGAGTCGATCC</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCRTGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28761</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>20110</contig_pos>
        <strand>+</strand>
        <context>TCCCTCRTGT[C/T]CCTCGTKTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGT</left_flank>
        <right_flank>CCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTACAACTACATCGATATCTGCATCTTGATACCTTTATTTTCCATTTATTTT</canonical>
            <polymorphic>TTAAAAACGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTYCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTACAACTACATCGATATCTGCATCTTGATACCTTTATTTTCCATTTATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTCGATTTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTACATATACATTGAGTCGATCC</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTYCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28762</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>20117</contig_pos>
        <strand>+</strand>
        <context>TGTYCCTCGT[G/T]TCGCYTTCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGT</left_flank>
        <right_flank>TCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTACAACTACATCGATATCTGCATCTTGATACCTTTATTTTCCATTTATTTTTTCCATC</canonical>
            <polymorphic>CGGGAGATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTKTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTACAACTACATCGATATCTGCATCTTGATACCTTTATTTTCCATTTATTTTTTCCATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>189 159 101 86 83 70 66 49 44 33 27 26 25 18 10 10 2 2</canonical_bands>
                <polymorphic_bands>189 159 103 101 86 83 66 49 44 27 26 25 18 10 10 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTCGATTTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTACATATACATTGAGTCGATCC</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTKTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28763</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>20122</contig_pos>
        <strand>+</strand>
        <context>CTCGTKTCGC[C/T]TTCCTTCCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGC</left_flank>
        <right_flank>TTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTACAACTACATCGATATCTGCATCTTGATACCTTTATTTTCCATTTATTTTTTCCATCAATAA</canonical>
            <polymorphic>GATAAGAGTAGCTATGGAGTTCCGGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCYTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTACAACTACATCGATATCTGCATCTTGATACCTTTATTTTCCATTTATTTTTTCCATCAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTCGATTTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTACATATACATTGAGTCGATCC</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCYTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28764</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>20145</contig_pos>
        <strand>+</strand>
        <context>TCGTTCCTCT[C/T]TTCCACCCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCT</left_flank>
        <right_flank>TTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTACAACTACATCGATATCTGCATCTTGATACCTTTATTTTCCATTTATTTTTTCCATCAATAATCATTTCATATTCTATAACCATT</canonical>
            <polymorphic>GGTAAAAAATCCCAACCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTYTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTACAACTACATCGATATCTGCATCTTGATACCTTTATTTTCCATTTATTTTTTCCATCAATAATCATTTCATATTCTATAACCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTCGATTTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTACATATACATTGAGTCGATCC</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTYTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28765</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>20160</contig_pos>
        <strand>+</strand>
        <context>ACCCAACCGA[C/T]RAGRCGWTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGA</left_flank>
        <right_flank>GAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTACAACTACATCGATATCTGCATCTTGATACCTTTATTTTCCATTTATTTTTTCCATCAATAATCATTTCATATTCTATAACCATTTCATGTTCATAAGCT</canonical>
            <polymorphic>CCAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGAYGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTACAACTACATCGATATCTGCATCTTGATACCTTTATTTTCCATTTATTTTTTCCATCAATAATCATTTCATATTCTATAACCATTTCATGTTCATAAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>499 287 200 14</canonical_bands>
                <polymorphic_bands>699 287 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTCGATTTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TGTGTCTGGCTAAACTTACATATAC</pcr_primer_p2>
		<pcr_amplicon_size>326</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACA</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGAYGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28766</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>20161</contig_pos>
        <strand>+</strand>
        <context>CCCAACCGAY[A/G]AGRCGWTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGAC</left_flank>
        <right_flank>AGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTACAACTACATCGATATCTGCATCTTGATACCTTTATTTTCCATTTATTTTTTCCATCAATAATCATTTCATATTCTATAACCATTTCATGTTCATAAGCTC</canonical>
            <polymorphic>CAGCTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACRAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTACAACTACATCGATATCTGCATCTTGATACCTTTATTTTCCATTTATTTTTTCCATCAATAATCATTTCATATTCTATAACCATTTCATGTTCATAAGCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>500 287 200 13</canonical_bands>
                <polymorphic_bands>700 287 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTCGATTTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TGTGTCTGGCTAAACTTACATATAC</pcr_primer_p2>
		<pcr_amplicon_size>326</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACA</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACRAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28767</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>20164</contig_pos>
        <strand>+</strand>
        <context>AACCGAYRAG[A/G]CGWTTTTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAG</left_flank>
        <right_flank>CGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTACAACTACATCGATATCTGCATCTTGATACCTTTATTTTCCATTTATTTTTTCCATCAATAATCATTTCATATTCTATAACCATTTCATGTTCATAAGCTCCTC</canonical>
            <polymorphic>CTCAGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGRCGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTACAACTACATCGATATCTGCATCTTGATACCTTTATTTTCCATTTATTTTTTCCATCAATAATCATTTCATATTCTATAACCATTTCATGTTCATAAGCTCCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>500 320 106 74</canonical_bands>
                <polymorphic_bands>820 106 74</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTCGATTTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TAAGTGTGTGTCTGGCTAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>332</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTA</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGRCGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28768</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>20167</contig_pos>
        <strand>+</strand>
        <context>CGAYRAGRCG[A/T]TTTTTTCTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACG</left_flank>
        <right_flank>TTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTACAACTACATCGATATCTGCATCTTGATACCTTTATTTTCCATTTATTTTTTCCATCAATAATCATTTCATATTCTATAACCATTTCATGTTCATAAGCTCCTCATT</canonical>
            <polymorphic>AGCGTCGCTCTCGTCAGTCGCCTTCCATGTCCACTTAGGTAGTTTAGTTGGAAACAAATAGGAAAATAAAACGTAATCTTCACGCCGAGTTCAGCATGTTTGTTAAATTTTGATTATGAATAAATGTTTTCAATAATCCAGATGAACAAAGAAATTGAATGGGATGTTTTCTAAAAACGTAGTTCTTCCGATCATTGGCTTTCTCATATTATCTTATTTCTACAGCATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGWTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTAAACCTGATTTACCAATTTTCAGATTGTACATATTAATCTTGAATAAGAGCAATGTTGGCGTCCGATCAATTTTTCGATGAAAATTCCTAAATTCCGAAAAAATTTTGAAAAAATTGATCTATCTTCGCCGCGCAAAAATAACTTTCCTGCTGACACGCTTTTTATCATTGGAGTTCAACAGCGTAAATTATTAATTTTAGCCTTCCCTGCTCCTGAGAGAAAGACTAATTTTCCAGATCATCTCATCTATCATTCACAACTATGTATGCTCTTCATATACACATTATATCTATCCTTGTCATCTCCACCCATTTTGCGCTATCAACATCCGCGGGTACAACTACATCGATATCTGCATCTTGATACCTTTATTTTCCATTTATTTTTTCCATCAATAATCATTTCATATTCTATAACCATTTCATGTTCATAAGCTCCTCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>503 320 106 71</canonical_bands>
                <polymorphic_bands>823 106 71</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTCCTCGATTTGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TAAGTGTGTGTCTGGCTAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>332</pcr_amplicon_size>
		<canonical_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGTTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTA</canonical_amplicon>
		<polymorphic_amplicon>CATTCCTCGATTTGAAAAAGCAGCAAGCTCGGATCGAAAGTTGGCACCGAGCCAATTTCGGACGCGTCGCGTGTCGGCGTAGCGGCGCAGTAGCAACAGCAGAGAGACGCATTGGTGATAGTCGGTGTCATGTTACATTTTGGTGGTAGCGAACACAGGAAGAGACTGACAGAAATGAGGAGAATCAGAGAAGCAGACGCTTGACAGTCCCTCATGTCCCTCGTGTCGCTTTCCTTCCTCAGTCGTTCCTCTCTTCCACCCAACCGACGAGACGWTTTTTTCTTCTCCGGATCGACTCAATGTATATGTAAGTTTAGCCAGACACACACTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28769</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>63642</contig_pos>
        <strand></strand>
        <context>ttactttttg[A/G]caattttgag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTG</left_flank>
        <right_flank>CAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATCAAGTCTCACTATTGCCGTCGCCGCCGCAACACACAACTGGCGCAATCAATCCCCCAACCACCGGAATGGGAGCTCATGCGCTGCGCGGCTCGTGGAGCTTGCGCTCGTTCGTGTCGTCATACACCGGTTGTGGTGCGCCTTGTGTGTGTGTGAACAGCAAAATAATATGGTTTTTTGGTCGGGGCCGTGCTAAGCTTGATAATCGAGGCGGCTAACTGGCCGTGAAAAAATGCAAATAGCTGGTAGGCACACCTGGGCTCGAAGAATTACTTGTTGGTGTTGACTTTCACGTCATTTCATAATGGTTTTTTTGCTTAATAGGGTAGAGAATCTGTTTGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCTCAGAACAGAACGGAAGAAAATTGTGGCAAAAGTA</canonical>
            <polymorphic>AAAATCAAGTCTCACTATTGCCGTCGCCGCCGCAACACACAACTGGCGCAATCAATCCCCCAACCACCGGAATGGGAGCTCATGCGCTGCGCGGCTCGTGGAGCTTGCGCTCGTTCGTGTCGTCATACACCGGTTGTGGTGCGCCTTGTGTGTGTGTGAACAGCAAAATAATATGGTTTTTTGGTCGGGGCCGTGCTAAGCTTGATAATCGAGGCGGCTAACTGGCCGTGAAAAAATGCAAATAGCTGGTAGGCACACCTGGGCTCGAAGAATTACTTGTTGGTGTTGACTTTCACGTCATTTCATAATGGTTTTTTTGCTTAATAGGGTAGAGAATCTGTTTGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGRCAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCTCAGAACAGAACGGAAGAAAATTGTGGCAAAAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCATGAGATTGTAGTGTAATGT</pcr_primer_p1>
		<pcr_primer_p2>GTCTAAAACCAACAAATAAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>331</pcr_amplicon_size>
		<canonical_amplicon>TGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGAC</canonical_amplicon>
		<polymorphic_amplicon>TGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGRCAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28770</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>63654</contig_pos>
        <strand></strand>
        <context>aattttgagt[T/C]ttcaggagtc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGT</left_flank>
        <right_flank>TTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTATTGCCGTCGCCGCCGCAACACACAACTGGCGCAATCAATCCCCCAACCACCGGAATGGGAGCTCATGCGCTGCGCGGCTCGTGGAGCTTGCGCTCGTTCGTGTCGTCATACACCGGTTGTGGTGCGCCTTGTGTGTGTGTGAACAGCAAAATAATATGGTTTTTTGGTCGGGGCCGTGCTAAGCTTGATAATCGAGGCGGCTAACTGGCCGTGAAAAAATGCAAATAGCTGGTAGGCACACCTGGGCTCGAAGAATTACTTGTTGGTGTTGACTTTCACGTCATTTCATAATGGTTTTTTTGCTTAATAGGGTAGAGAATCTGTTTGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCTCAGAACAGAACGGAAGAAAATTGTGGCAAAAGTAGGGACCCGTAAA</canonical>
            <polymorphic>CACTATTGCCGTCGCCGCCGCAACACACAACTGGCGCAATCAATCCCCCAACCACCGGAATGGGAGCTCATGCGCTGCGCGGCTCGTGGAGCTTGCGCTCGTTCGTGTCGTCATACACCGGTTGTGGTGCGCCTTGTGTGTGTGTGAACAGCAAAATAATATGGTTTTTTGGTCGGGGCCGTGCTAAGCTTGATAATCGAGGCGGCTAACTGGCCGTGAAAAAATGCAAATAGCTGGTAGGCACACCTGGGCTCGAAGAATTACTTGTTGGTGTTGACTTTCACGTCATTTCATAATGGTTTTTTTGCTTAATAGGGTAGAGAATCTGTTTGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTYTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCTCAGAACAGAACGGAAGAAAATTGTGGCAAAAGTAGGGACCCGTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCATGAGATTGTAGTGTAATGT</pcr_primer_p1>
		<pcr_primer_p2>GTCTAAAACCAACAAATAAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>331</pcr_amplicon_size>
		<canonical_amplicon>TGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGAC</canonical_amplicon>
		<polymorphic_amplicon>TGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTYTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28771</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>63688</contig_pos>
        <strand>+</strand>
        <context>tcaagtttcc[A/G]CRTTTTTCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCC</left_flank>
        <right_flank>CGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCAATCAATCCCCCAACCACCGGAATGGGAGCTCATGCGCTGCGCGGCTCGTGGAGCTTGCGCTCGTTCGTGTCGTCATACACCGGTTGTGGTGCGCCTTGTGTGTGTGTGAACAGCAAAATAATATGGTTTTTTGGTCGGGGCCGTGCTAAGCTTGATAATCGAGGCGGCTAACTGGCCGTGAAAAAATGCAAATAGCTGGTAGGCACACCTGGGCTCGAAGAATTACTTGTTGGTGTTGACTTTCACGTCATTTCATAATGGTTTTTTTGCTTAATAGGGTAGAGAATCTGTTTGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCTCAGAACAGAACGGAAGAAAATTGTGGCAAAAGTAGGGACCCGTAAAAGAAATGAGAGTCAAAAAAGAATATAAAGTTTTT</canonical>
            <polymorphic>CGCAATCAATCCCCCAACCACCGGAATGGGAGCTCATGCGCTGCGCGGCTCGTGGAGCTTGCGCTCGTTCGTGTCGTCATACACCGGTTGTGGTGCGCCTTGTGTGTGTGTGAACAGCAAAATAATATGGTTTTTTGGTCGGGGCCGTGCTAAGCTTGATAATCGAGGCGGCTAACTGGCCGTGAAAAAATGCAAATAGCTGGTAGGCACACCTGGGCTCGAAGAATTACTTGTTGGTGTTGACTTTCACGTCATTTCATAATGGTTTTTTTGCTTAATAGGGTAGAGAATCTGTTTGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCRCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCTCAGAACAGAACGGAAGAAAATTGTGGCAAAAGTAGGGACCCGTAAAAGAAATGAGAGTCAAAAAAGAATATAAAGTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>455 334 166 45</canonical_bands>
                <polymorphic_bands>621 334 45</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>336 331 167 138 28</canonical_bands>
                <polymorphic_bands>469 336 167 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCATGAGATTGTAGTGTAATGT</pcr_primer_p1>
		<pcr_primer_p2>GTCTAAAACCAACAAATAAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>331</pcr_amplicon_size>
		<canonical_amplicon>TGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGAC</canonical_amplicon>
		<polymorphic_amplicon>TGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCRCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28772</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>63690</contig_pos>
        <strand></strand>
        <context>aagtttccrC[G/A]TTTTTCTCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGC</left_flank>
        <right_flank>TTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATCAATCCCCCAACCACCGGAATGGGAGCTCATGCGCTGCGCGGCTCGTGGAGCTTGCGCTCGTTCGTGTCGTCATACACCGGTTGTGGTGCGCCTTGTGTGTGTGTGAACAGCAAAATAATATGGTTTTTTGGTCGGGGCCGTGCTAAGCTTGATAATCGAGGCGGCTAACTGGCCGTGAAAAAATGCAAATAGCTGGTAGGCACACCTGGGCTCGAAGAATTACTTGTTGGTGTTGACTTTCACGTCATTTCATAATGGTTTTTTTGCTTAATAGGGTAGAGAATCTGTTTGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCTCAGAACAGAACGGAAGAAAATTGTGGCAAAAGTAGGGACCCGTAAAAGAAATGAGAGTCAAAAAAGAATATAAAGTTTTTAC</canonical>
            <polymorphic>CAATCAATCCCCCAACCACCGGAATGGGAGCTCATGCGCTGCGCGGCTCGTGGAGCTTGCGCTCGTTCGTGTCGTCATACACCGGTTGTGGTGCGCCTTGTGTGTGTGTGAACAGCAAAATAATATGGTTTTTTGGTCGGGGCCGTGCTAAGCTTGATAATCGAGGCGGCTAACTGGCCGTGAAAAAATGCAAATAGCTGGTAGGCACACCTGGGCTCGAAGAATTACTTGTTGGTGTTGACTTTCACGTCATTTCATAATGGTTTTTTTGCTTAATAGGGTAGAGAATCTGTTTGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCRTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCTCAGAACAGAACGGAAGAAAATTGTGGCAAAAGTAGGGACCCGTAAAAGAAATGAGAGTCAAAAAAGAATATAAAGTTTTTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>455 336 166 43</canonical_bands>
                <polymorphic_bands>621 336 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCATGAGATTGTAGTGTAATGT</pcr_primer_p1>
		<pcr_primer_p2>GTCTAAAACCAACAAATAAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>331</pcr_amplicon_size>
		<canonical_amplicon>TGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGAC</canonical_amplicon>
		<polymorphic_amplicon>TGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCRTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28773</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>63754</contig_pos>
        <strand>+</strand>
        <context>aattttaaaa[C/T]GTGCTCTATC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAA</left_flank>
        <right_flank>GTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCGTGTCGTCATACACCGGTTGTGGTGCGCCTTGTGTGTGTGTGAACAGCAAAATAATATGGTTTTTTGGTCGGGGCCGTGCTAAGCTTGATAATCGAGGCGGCTAACTGGCCGTGAAAAAATGCAAATAGCTGGTAGGCACACCTGGGCTCGAAGAATTACTTGTTGGTGTTGACTTTCACGTCATTTCATAATGGTTTTTTTGCTTAATAGGGTAGAGAATCTGTTTGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCTCAGAACAGAACGGAAGAAAATTGTGGCAAAAGTAGGGACCCGTAAAAGAAATGAGAGTCAAAAAAGAATATAAAGTTTTTACTTATAGTAGAACATATCCTGGTCCGTGTACTCATCTGACGTGGGATAATTTCGATGGTGTTGAA</canonical>
            <polymorphic>GTTCGTGTCGTCATACACCGGTTGTGGTGCGCCTTGTGTGTGTGTGAACAGCAAAATAATATGGTTTTTTGGTCGGGGCCGTGCTAAGCTTGATAATCGAGGCGGCTAACTGGCCGTGAAAAAATGCAAATAGCTGGTAGGCACACCTGGGCTCGAAGAATTACTTGTTGGTGTTGACTTTCACGTCATTTCATAATGGTTTTTTTGCTTAATAGGGTAGAGAATCTGTTTGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAAYGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCTCAGAACAGAACGGAAGAAAATTGTGGCAAAAGTAGGGACCCGTAAAAGAAATGAGAGTCAAAAAAGAATATAAAGTTTTTACTTATAGTAGAACATATCCTGGTCCGTGTACTCATCTGACGTGGGATAATTTCGATGGTGTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCATGAGATTGTAGTGTAATGT</pcr_primer_p1>
		<pcr_primer_p2>GTCTAAAACCAACAAATAAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>331</pcr_amplicon_size>
		<canonical_amplicon>TGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGAC</canonical_amplicon>
		<polymorphic_amplicon>TGCATGAGATTGTAGTGTAATGTAGTTTTTTGGCTCCGGGGTATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAAYGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28774</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>64026</contig_pos>
        <strand>+</strand>
        <context>ATAAAAAGGT[A/T]AAGATCCTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGT</left_flank>
        <right_flank>AAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCTCAGAACAGAACGGAAGAAAATTGTGGCAAAAGTAGGGACCCGTAAAAGAAATGAGAGTCAAAAAAGAATATAAAGTTTTTACTTATAGTAGAACATATCCTGGTCCGTGTACTCATCTGACGTGGGATAATTTCGATGGTGTTGAACCTCTAGCGTTCGATAACCACCATTGTATATCGAATTGTTGTTCCTTTGTTGTGTCCAATACGGGTGTACTGTATTGTTGTCATAGACGTTTGACATTTCGTCAAATCCTAAAATGATAATTATTATGGATTTTTTTCTCTGAAAATGTAAAACGTACGTCTCTCTGCTCGTATCAAATTGTTCCGATCCATTGTCGCCGCGTGGTACTTCATTGGGTTCGGTTGTTTGAACATTGAATTATGCAACAGGAGCGGTTTTGATGAGTGCATTG</canonical>
            <polymorphic>ATTGTGATAATACAAACGAATGGGCAGGTTTCCAACTCCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTWAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCTCAGAACAGAACGGAAGAAAATTGTGGCAAAAGTAGGGACCCGTAAAAGAAATGAGAGTCAAAAAAGAATATAAAGTTTTTACTTATAGTAGAACATATCCTGGTCCGTGTACTCATCTGACGTGGGATAATTTCGATGGTGTTGAACCTCTAGCGTTCGATAACCACCATTGTATATCGAATTGTTGTTCCTTTGTTGTGTCCAATACGGGTGTACTGTATTGTTGTCATAGACGTTTGACATTTCGTCAAATCCTAAAATGATAATTATTATGGATTTTTTTCTCTGAAAATGTAAAACGTACGTCTCTCTGCTCGTATCAAATTGTTCCGATCCATTGTCGCCGCGTGGTACTTCATTGGGTTCGGTTGTTTGAACATTGAATTATGCAACAGGAGCGGTTTTGATGAGTGCATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>501 216 145 68 26 18 15 6 5</canonical_bands>
                <polymorphic_bands>527 216 145 68 18 15 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCATTTTTCTTGTAGGATATG</pcr_primer_p1>
		<pcr_primer_p2>AGAGCTCTATTTATGTACCCTACG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCT</canonical_amplicon>
		<polymorphic_amplicon>GCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTWAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28775</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>64063</contig_pos>
        <strand>+</strand>
        <context>AAAGTGGCTA[C/G]GAMATGGGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTA</left_flank>
        <right_flank>GACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCTCAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCTCAGAACAGAACGGAAGAAAATTGTGGCAAAAGTAGGGACCCGTAAAAGAAATGAGAGTCAAAAAAGAATATAAAGTTTTTACTTATAGTAGAACATATCCTGGTCCGTGTACTCATCTGACGTGGGATAATTTCGATGGTGTTGAACCTCTAGCGTTCGATAACCACCATTGTATATCGAATTGTTGTTCCTTTGTTGTGTCCAATACGGGTGTACTGTATTGTTGTCATAGACGTTTGACATTTCGTCAAATCCTAAAATGATAATTATTATGGATTTTTTTCTCTGAAAATGTAAAACGTACGTCTCTCTGCTCGTATCAAATTGTTCCGATCCATTGTCGCCGCGTGGTACTTCATTGGGTTCGGTTGTTTGAACATTGAATTATGCAACAGGAGCGGTTTTGATGAGTGCATTGTCCTGTCACTGGACCAATCATTTTCCTGAGGAGCAGC</canonical>
            <polymorphic>CCTAACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTASGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCTCAGAACAGAACGGAAGAAAATTGTGGCAAAAGTAGGGACCCGTAAAAGAAATGAGAGTCAAAAAAGAATATAAAGTTTTTACTTATAGTAGAACATATCCTGGTCCGTGTACTCATCTGACGTGGGATAATTTCGATGGTGTTGAACCTCTAGCGTTCGATAACCACCATTGTATATCGAATTGTTGTTCCTTTGTTGTGTCCAATACGGGTGTACTGTATTGTTGTCATAGACGTTTGACATTTCGTCAAATCCTAAAATGATAATTATTATGGATTTTTTTCTCTGAAAATGTAAAACGTACGTCTCTCTGCTCGTATCAAATTGTTCCGATCCATTGTCGCCGCGTGGTACTTCATTGGGTTCGGTTGTTTGAACATTGAATTATGCAACAGGAGCGGTTTTGATGAGTGCATTGTCCTGTCACTGGACCAATCATTTTCCTGAGGAGCAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>497 305 198</canonical_bands>
                <polymorphic_bands>695 305</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTAAGCTCAATCCATGACAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGACTCTCATTTCTTTTACG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCTCAGAACAGAACGGAAGAAAATTGTGGCAAAAGTAGGGACCCGTAAAAGAAATGAGAGTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>AGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTASGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCTCAGAACAGAACGGAAGAAAATTGTGGCAAAAGTAGGGACCCGTAAAAGAAATGAGAGTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28776</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>64066</contig_pos>
        <strand>+</strand>
        <context>GTGGCTASGA[A/C]ATGGGGAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGA</left_flank>
        <right_flank>ATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCTCAGAACAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCTCAGAACAGAACGGAAGAAAATTGTGGCAAAAGTAGGGACCCGTAAAAGAAATGAGAGTCAAAAAAGAATATAAAGTTTTTACTTATAGTAGAACATATCCTGGTCCGTGTACTCATCTGACGTGGGATAATTTCGATGGTGTTGAACCTCTAGCGTTCGATAACCACCATTGTATATCGAATTGTTGTTCCTTTGTTGTGTCCAATACGGGTGTACTGTATTGTTGTCATAGACGTTTGACATTTCGTCAAATCCTAAAATGATAATTATTATGGATTTTTTTCTCTGAAAATGTAAAACGTACGTCTCTCTGCTCGTATCAAATTGTTCCGATCCATTGTCGCCGCGTGGTACTTCATTGGGTTCGGTTGTTTGAACATTGAATTATGCAACAGGAGCGGTTTTGATGAGTGCATTGTCCTGTCACTGGACCAATCATTTTCCTGAGGAGCAGCTGG</canonical>
            <polymorphic>AACATATTTTTAGGATTTTCAAATACAGCACGGTACAATAAGATATGAAAAAACAAGTGTTTTAGTTACTTTTTGACAATTTTGAGTTTTCAGGAGTCTAAAGATTTGCTGTCAAGTTTCCGCGTTTTTCTCAATTTTTTTCAAAAAAAAAAAACATTTTTTCGTTGATTTTTTTTTAATTTTAAAATGTGCTCTATCATATGAAATATACTAAAAAATCTCAAAAACCTTTATTTGTTGGTTTTAGACCAAATTTTCCGCCTTCGTTCGCACGGTGACATAATGCCGCGGAGCCATTTTTCTTGTAGGATATGCTATAACTCAATTTAAAAAATTATTTATTAAATAAAAAAAATCAGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGAMATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCTCAGAACAGAACGGAAGAAAATTGTGGCAAAAGTAGGGACCCGTAAAAGAAATGAGAGTCAAAAAAGAATATAAAGTTTTTACTTATAGTAGAACATATCCTGGTCCGTGTACTCATCTGACGTGGGATAATTTCGATGGTGTTGAACCTCTAGCGTTCGATAACCACCATTGTATATCGAATTGTTGTTCCTTTGTTGTGTCCAATACGGGTGTACTGTATTGTTGTCATAGACGTTTGACATTTCGTCAAATCCTAAAATGATAATTATTATGGATTTTTTTCTCTGAAAATGTAAAACGTACGTCTCTCTGCTCGTATCAAATTGTTCCGATCCATTGTCGCCGCGTGGTACTTCATTGGGTTCGGTTGTTTGAACATTGAATTATGCAACAGGAGCGGTTTTGATGAGTGCATTGTCCTGTCACTGGACCAATCATTTTCCTGAGGAGCAGCTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 372 128</canonical_bands>
                <polymorphic_bands>628 372</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTAAGCTCAATCCATGACAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGACTCTCATTTCTTTTACG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGACATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCTCAGAACAGAACGGAAGAAAATTGTGGCAAAAGTAGGGACCCGTAAAAGAAATGAGAGTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>AGTTAAGCTCAATCCATGACACACGAGCTTCGAGATGTTGTGTGGTAACCGGTCTGACAATGCAGTAAAGTTAAATTAAGCTCGGTAAACAAATAAAAAGGTTAAGATCCTGAGAACAATCAGAAAAACAAAGTGGCTAGGAMATGGGGAAGAATTGAACCCGTAGGGTACATAAATAGAGCTCTCAGAACAGAACGGAAGAAAATTGTGGCAAAAGTAGGGACCCGTAAAAGAAATGAGAGTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28777</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>67602</contig_pos>
        <strand>+</strand>
        <context>TTCAGAATAT[C/T]CCCCCCCCCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCGTCTCTAAAACCCACTACACGTAGTAGTGAATAGAAATTCAGAATAT</left_flank>
        <right_flank>CCCCCCCCCCCCCGCTGCTAAATATATATCTATGTTTATCTCTCACTTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGTTGTGAAAATTGGGCTATTAAAGAAAAATGGGTATTTTTTCTCCTCTCAATCCATTGTCTCATATTCTTCCTACCCCACCAGTCAATCTTCATTAGCACTTACTCCCCTGGGACCCCCACCTCATAATTAATAAGTGCACAGGTGCTCGTCCCGTTGTCTTGAATTACATTATTACAATTATTCGACTTTTGCCGACCAGCACCGAAGAAAAAGTATCCAATATCGTTTCTTTGTCTGTCTACTATCTAAAAACGGGAGAAAGAAACTGGACAGGTGACGTTTCTCATGATTGACATCTTTTCTACCGTATTCCGACGTCTTCCCCTTCAATTTCCATACTCATGTATATAGTTTCGAAGTGAAATGAAATTTTTGAAACAGAATTCAAAGTCTACAAATGCTATGCTTGAGGGCATTTGAATTCAAAAAGTATATATGCATGGATGCGTCTCTAAAACCCACTACACGTAGTAGTGAATAGAAATTCAGAATATCCCCCCCCCCCCCCGCTGCTAAATATATATCTATGTTTATCTCTCACTTATTTGTTTGGATTGTATTTTAGTAAGTGGAATGAGAGAGAGGGGATATATAGAATGGTGTTGAGCTCTCACTTGTGCAATGGACACGTGAATGGTAAACATTAGGCGACACGATGCAGCTGGCTCGCGCATTCGGGGAGAAACGATGCTTACAAAGTAATGAAAAGGCAGCTAATTGCGAGCGGGCTCCGAGGTAATTTGAGATGTTCTCAACTTCTTCTTCGGAAGGTCCTTCTTTCTCCTAACACCACTTCTTTCAAGATTTGAAAATTGAGACTGCAATTAGTAGAAAGAGAGGGGCCCCGGAACGGAATGCTAATGAAGATTCTCCCTCTTCCGGAAACGCGTCGAGATCTTCTATTCTGAGAATAAGACGAAGTTGAAAAGATTGAGATGAATCGGTGTTAATACTAATCGGATGAAAATTACAAATCTGGTCTTCTCAATGTTTTT</canonical>
            <polymorphic>CCTGTTGTGAAAATTGGGCTATTAAAGAAAAATGGGTATTTTTTCTCCTCTCAATCCATTGTCTCATATTCTTCCTACCCCACCAGTCAATCTTCATTAGCACTTACTCCCCTGGGACCCCCACCTCATAATTAATAAGTGCACAGGTGCTCGTCCCGTTGTCTTGAATTACATTATTACAATTATTCGACTTTTGCCGACCAGCACCGAAGAAAAAGTATCCAATATCGTTTCTTTGTCTGTCTACTATCTAAAAACGGGAGAAAGAAACTGGACAGGTGACGTTTCTCATGATTGACATCTTTTCTACCGTATTCCGACGTCTTCCCCTTCAATTTCCATACTCATGTATATAGTTTCGAAGTGAAATGAAATTTTTGAAACAGAATTCAAAGTCTACAAATGCTATGCTTGAGGGCATTTGAATTCAAAAAGTATATATGCATGGATGCGTCTCTAAAACCCACTACACGTAGTAGTGAATAGAAATTCAGAATATYCCCCCCCCCCCCCGCTGCTAAATATATATCTATGTTTATCTCTCACTTATTTGTTTGGATTGTATTTTAGTAAGTGGAATGAGAGAGAGGGGATATATAGAATGGTGTTGAGCTCTCACTTGTGCAATGGACACGTGAATGGTAAACATTAGGCGACACGATGCAGCTGGCTCGCGCATTCGGGGAGAAACGATGCTTACAAAGTAATGAAAAGGCAGCTAATTGCGAGCGGGCTCCGAGGTAATTTGAGATGTTCTCAACTTCTTCTTCGGAAGGTCCTTCTTTCTCCTAACACCACTTCTTTCAAGATTTGAAAATTGAGACTGCAATTAGTAGAAAGAGAGGGGCCCCGGAACGGAATGCTAATGAAGATTCTCCCTCTTCCGGAAACGCGTCGAGATCTTCTATTCTGAGAATAAGACGAAGTTGAAAAGATTGAGATGAATCGGTGTTAATACTAATCGGATGAAAATTACAAATCTGGTCTTCTCAATGTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGAAATGAAATTTTTGAAACAG</pcr_primer_p1>
		<pcr_primer_p2>GCTCAACACCATTCTATATATCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGAAATGAAATTTTTGAAACAGAATTCAAAGTCTACAAATGCTATGCTTGAGGGCATTTGAATTCAAAAAGTATATATGCATGGATGCGTCTCTAAAACCCACTACACGTAGTAGTGAATAGAAATTCAGAATATCCCCCCCCCCCCCCGCTGCTAAATATATATCTATGTTTATCTCTCACTTATTTGTTTGGATTGTATTTTAGTAAGTGGAATGAGAGAGAGGGGATATATAGAATGGTGTTGAGC</canonical_amplicon>
		<polymorphic_amplicon>GTGAAATGAAATTTTTGAAACAGAATTCAAAGTCTACAAATGCTATGCTTGAGGGCATTTGAATTCAAAAAGTATATATGCATGGATGCGTCTCTAAAACCCACTACACGTAGTAGTGAATAGAAATTCAGAATATYCCCCCCCCCCCCCGCTGCTAAATATATATCTATGTTTATCTCTCACTTATTTGTTTGGATTGTATTTTAGTAAGTGGAATGAGAGAGAGGGGATATATAGAATGGTGTTGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28778</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>68191</contig_pos>
        <strand></strand>
        <context>tgggagatac[C/G]aaaaatatgt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTCTGTCTGCGCACTTTCAGCTCAAATATCTCGGTTTCTATGGGAGATAC</left_flank>
        <right_flank>AAAAATATGTCAACTGATAAAATATTGGTGATTTTATGAAAAACAATTTA</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGATATATAGAATGGTGTTGAGCTCTCACTTGTGCAATGGACACGTGAATGGTAAACATTAGGCGACACGATGCAGCTGGCTCGCGCATTCGGGGAGAAACGATGCTTACAAAGTAATGAAAAGGCAGCTAATTGCGAGCGGGCTCCGAGGTAATTTGAGATGTTCTCAACTTCTTCTTCGGAAGGTCCTTCTTTCTCCTAACACCACTTCTTTCAAGATTTGAAAATTGAGACTGCAATTAGTAGAAAGAGAGGGGCCCCGGAACGGAATGCTAATGAAGATTCTCCCTCTTCCGGAAACGCGTCGAGATCTTCTATTCTGAGAATAAGACGAAGTTGAAAAGATTGAGATGAATCGGTGTTAATACTAATCGGATGAAAATTACAAATCTGGTCTTCTCAATGTTTTTCTTTACAGATTCTAAATTTGCAAAAAATCCCAAAAATGCTCTGTCTGCGCACTTTCAGCTCAAATATCTCGGTTTCTATGGGAGATACCAAAAATATGTCAACTGATAAAATATTGGTGATTTTATGAAAAACAATTTATCAGTTGAACATTTTTCGATATCTTTCGAAAGAGCTGAGATAAGTAAGCTCAACGTTTGCGTATAAGGTGAGTTGTTACGAGAGCTTCACGGTTATTACGCTCTGATAAAATTCCACCCAATTTGAGCTCAATTATCTCGGTTTCGAAAAAATATAGCAATAATTTGTAAACTTTTAAAATATTGGTAATATTTTAATTAATAATTTATCAGTTGAAACTTTTCTGATATCTTCTACTGAAACCAGAATAATTTAGCTGAAAATGCTCCCGCTCAAAGCTCTAAGAAGGGAGCTCAAAGTGCACTTTGAGCTCAATTATCTCAATTTCTGTTGGAGATATAAAAGCTGCAAACTATGTAAATGTCACTGATAATGAGATAATTGAAACTGAGATAATTGAAGCCCCTAATTCACTACTTGCTTGTCCCTACTTCGCTTCTCTATGCTTAA</canonical>
            <polymorphic>GGGATATATAGAATGGTGTTGAGCTCTCACTTGTGCAATGGACACGTGAATGGTAAACATTAGGCGACACGATGCAGCTGGCTCGCGCATTCGGGGAGAAACGATGCTTACAAAGTAATGAAAAGGCAGCTAATTGCGAGCGGGCTCCGAGGTAATTTGAGATGTTCTCAACTTCTTCTTCGGAAGGTCCTTCTTTCTCCTAACACCACTTCTTTCAAGATTTGAAAATTGAGACTGCAATTAGTAGAAAGAGAGGGGCCCCGGAACGGAATGCTAATGAAGATTCTCCCTCTTCCGGAAACGCGTCGAGATCTTCTATTCTGAGAATAAGACGAAGTTGAAAAGATTGAGATGAATCGGTGTTAATACTAATCGGATGAAAATTACAAATCTGGTCTTCTCAATGTTTTTCTTTACAGATTCTAAATTTGCAAAAAATCCCAAAAATGCTCTGTCTGCGCACTTTCAGCTCAAATATCTCGGTTTCTATGGGAGATACSAAAAATATGTCAACTGATAAAATATTGGTGATTTTATGAAAAACAATTTATCAGTTGAACATTTTTCGATATCTTTCGAAAGAGCTGAGATAAGTAAGCTCAACGTTTGCGTATAAGGTGAGTTGTTACGAGAGCTTCACGGTTATTACGCTCTGATAAAATTCCACCCAATTTGAGCTCAATTATCTCGGTTTCGAAAAAATATAGCAATAATTTGTAAACTTTTAAAATATTGGTAATATTTTAATTAATAATTTATCAGTTGAAACTTTTCTGATATCTTCTACTGAAACCAGAATAATTTAGCTGAAAATGCTCCCGCTCAAAGCTCTAAGAAGGGAGCTCAAAGTGCACTTTGAGCTCAATTATCTCAATTTCTGTTGGAGATATAAAAGCTGCAAACTATGTAAATGTCACTGATAATGAGATAATTGAAACTGAGATAATTGAAGCCCCTAATTCACTACTTGCTTGTCCCTACTTCGCTTCTCTATGCTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCTGGTCTTCTCAATGTTTT</pcr_primer_p1>
		<pcr_primer_p2>AGCTCTCGTAACAACTCACCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATCTGGTCTTCTCAATGTTTTTCTTTACAGATTCTAAATTTGCAAAAAATCCCAAAAATGCTCTGTCTGCGCACTTTCAGCTCAAATATCTCGGTTTCTATGGGAGATACCAAAAATATGTCAACTGATAAAATATTGGTGATTTTATGAAAAACAATTTATCAGTTGAACATTTTTCGATATCTTTCGAAAGAGCTGAGATAAGTAAGCTCAACGTTTGCGTATAAGGTGAGTTGTTACGAGAGCT</canonical_amplicon>
		<polymorphic_amplicon>AAATCTGGTCTTCTCAATGTTTTTCTTTACAGATTCTAAATTTGCAAAAAATCCCAAAAATGCTCTGTCTGCGCACTTTCAGCTCAAATATCTCGGTTTCTATGGGAGATACSAAAAATATGTCAACTGATAAAATATTGGTGATTTTATGAAAAACAATTTATCAGTTGAACATTTTTCGATATCTTTCGAAAGAGCTGAGATAAGTAAGCTCAACGTTTGCGTATAAGGTGAGTTGTTACGAGAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28779</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>154843</contig_pos>
        <strand>+</strand>
        <context>TTACGAAAAC[A/G]TATGAYTTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATTTCCGATCCATGGGCACGTTTCCTAAAATTTGAGAATTACGAAAAC</left_flank>
        <right_flank>TATGATTTGGGACAACTCACTATCATCCTCGTGGTCCAAGCATCTGTAGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATCCTTTTCCGGGTATCCGTATGGGAAGAACACTTCTTCGTCCTTCTTGATATCTTGATCAGCAACAAATGCCACTCGTGGCTCTCCTTTTGACGTTCGGAAGATAGTGGTGAGATTTGGCGTGTCCGAGTGATTGATGAAGCGTGTCTCATTTCCGGCTTTAGCGGAATCAAGTGCCCCGATGGAATACGGCAGATCTGAAAATTATTTGTTAAAATGGTCAATTGCTAACGATAGAAACTGACGATAGACATAGCTGATGCCAAAATGATACACCTTTCCTCTTCTCTCAACTTCATCTTCATTTATCTGCTCTCCAGTATATTCTCCAACGATCTCGCCCTTTTTGATGTCCCTCTTCGCGACCGCTCCAAATCCAGCTCCCAGAACTTTGGACTTTGTGACTTTCAAAAGAGTTTCTACTGGACGCTGGAACACGAAATTGCCACATTTCCGATCCATGGGCACGTTTCCTAAAATTTGAGAATTACGAAAACATATGATTTGGGACAACTCACTATCATCCTCGTGGTCCAAGCATCTGTAGCATAGGCCCTTTTCGCATTCGTTCCTTTGTCGGATACATTGACAGTCTTCAGTTTGACACTGACCAGGTGGACAGTCGCATCCTGGGAACCGACGAGGGCAGTCGATGTCGCATTCACATCGGAGGGAACAAAAGTCCTTGCAGTCACAATCCTCGGCAAACGGTCCGCATCGGCCGAAATGGGAGCACGGACCAGATAACGACTCATGGTCCACTTCCTTTTTAAGCTCGGCCTTGAGAGCCTCGATTTCTTCAGGTGTTTTACCATTTTCACTTGCAGTTCGAATCTTTCTGTAGTGGCGAAAATACCTCTTTTTATCCTTTTTCGCATAATGCTCTTGTCCATCCCTGATGAATTTCTTGAATCGCTCTTTGAAGGGTCTGAAAACAACTTTTTTTAAAAATTGAGGGTTTCTTGGTTCTAACCCAAAATAAAAGCCCTTTAGAAAAA</canonical>
            <polymorphic>AGATCCTTTTCCGGGTATCCGTATGGGAAGAACACTTCTTCGTCCTTCTTGATATCTTGATCAGCAACAAATGCCACTCGTGGCTCTCCTTTTGACGTTCGGAAGATAGTGGTGAGATTTGGCGTGTCCGAGTGATTGATGAAGCGTGTCTCATTTCCGGCTTTAGCGGAATCAAGTGCCCCGATGGAATACGGCAGATCTGAAAATTATTTGTTAAAATGGTCAATTGCTAACGATAGAAACTGACGATAGACATAGCTGATGCCAAAATGATACACCTTTCCTCTTCTCTCAACTTCATCTTCATTTATCTGCTCTCCAGTATATTCTCCAACGATCTCGCCCTTTTTGATGTCCCTCTTCGCGACCGCTCCAAATCCAGCTCCCAGAACTTTGGACTTTGTGACTTTCAAAAGAGTTTCTACTGGACGCTGGAACACGAAATTGCCACATTTCCGATCCATGGGCACGTTTCCTAAAATTTGAGAATTACGAAAACRTATGATTTGGGACAACTCACTATCATCCTCGTGGTCCAAGCATCTGTAGCATAGGCCCTTTTCGCATTCGTTCCTTTGTCGGATACATTGACAGTCTTCAGTTTGACACTGACCAGGTGGACAGTCGCATCCTGGGAACCGACGAGGGCAGTCGATGTCGCATTCACATCGGAGGGAACAAAAGTCCTTGCAGTCACAATCCTCGGCAAACGGTCCGCATCGGCCGAAATGGGAGCACGGACCAGATAACGACTCATGGTCCACTTCCTTTTTAAGCTCGGCCTTGAGAGCCTCGATTTCTTCAGGTGTTTTACCATTTTCACTTGCAGTTCGAATCTTTCTGTAGTGGCGAAAATACCTCTTTTTATCCTTTTTCGCATAATGCTCTTGTCCATCCCTGATGAATTTCTTGAATCGCTCTTTGAAGGGTCTGAAAACAACTTTTTTTAAAAATTGAGGGTTTCTTGGTTCTAACCCAAAATAAAAGCCCTTTAGAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATATG</site>
                <isoschizomers>
                    <enzyme>FauNDI</enzyme>
                    <enzyme>NdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTTTTGATGTCCCTCTTC</pcr_primer_p1>
		<pcr_primer_p2>CTGTCAATGTATCCGACAAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCTTTTTGATGTCCCTCTTCGCGACCGCTCCAAATCCAGCTCCCAGAACTTTGGACTTTGTGACTTTCAAAAGAGTTTCTACTGGACGCTGGAACACGAAATTGCCACATTTCCGATCCATGGGCACGTTTCCTAAAATTTGAGAATTACGAAAACATATGATTTGGGACAACTCACTATCATCCTCGTGGTCCAAGCATCTGTAGCATAGGCCCTTTTCGCATTCGTTCCTTTGTCGGATACATTGACAG</canonical_amplicon>
		<polymorphic_amplicon>CCTTTTTGATGTCCCTCTTCGCGACCGCTCCAAATCCAGCTCCCAGAACTTTGGACTTTGTGACTTTCAAAAGAGTTTCTACTGGACGCTGGAACACGAAATTGCCACATTTCCGATCCATGGGCACGTTTCCTAAAATTTGAGAATTACGAAAACRTATGATTTGGGACAACTCACTATCATCCTCGTGGTCCAAGCATCTGTAGCATAGGCCCTTTTCGCATTCGTTCCTTTGTCGGATACATTGACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28780</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>154849</contig_pos>
        <strand>+</strand>
        <context>AAACRTATGA[C/T]TTGGGACAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGATCCATGGGCACGTTTCCTAAAATTTGAGAATTACGAAAACATATGA</left_flank>
        <right_flank>TTGGGACAACTCACTATCATCCTCGTGGTCCAAGCATCTGTAGCATAGGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCCGGGTATCCGTATGGGAAGAACACTTCTTCGTCCTTCTTGATATCTTGATCAGCAACAAATGCCACTCGTGGCTCTCCTTTTGACGTTCGGAAGATAGTGGTGAGATTTGGCGTGTCCGAGTGATTGATGAAGCGTGTCTCATTTCCGGCTTTAGCGGAATCAAGTGCCCCGATGGAATACGGCAGATCTGAAAATTATTTGTTAAAATGGTCAATTGCTAACGATAGAAACTGACGATAGACATAGCTGATGCCAAAATGATACACCTTTCCTCTTCTCTCAACTTCATCTTCATTTATCTGCTCTCCAGTATATTCTCCAACGATCTCGCCCTTTTTGATGTCCCTCTTCGCGACCGCTCCAAATCCAGCTCCCAGAACTTTGGACTTTGTGACTTTCAAAAGAGTTTCTACTGGACGCTGGAACACGAAATTGCCACATTTCCGATCCATGGGCACGTTTCCTAAAATTTGAGAATTACGAAAACATATGATTTGGGACAACTCACTATCATCCTCGTGGTCCAAGCATCTGTAGCATAGGCCCTTTTCGCATTCGTTCCTTTGTCGGATACATTGACAGTCTTCAGTTTGACACTGACCAGGTGGACAGTCGCATCCTGGGAACCGACGAGGGCAGTCGATGTCGCATTCACATCGGAGGGAACAAAAGTCCTTGCAGTCACAATCCTCGGCAAACGGTCCGCATCGGCCGAAATGGGAGCACGGACCAGATAACGACTCATGGTCCACTTCCTTTTTAAGCTCGGCCTTGAGAGCCTCGATTTCTTCAGGTGTTTTACCATTTTCACTTGCAGTTCGAATCTTTCTGTAGTGGCGAAAATACCTCTTTTTATCCTTTTTCGCATAATGCTCTTGTCCATCCCTGATGAATTTCTTGAATCGCTCTTTGAAGGGTCTGAAAACAACTTTTTTTAAAAATTGAGGGTTTCTTGGTTCTAACCCAAAATAAAAGCCCTTTAGAAAAACGGACT</canonical>
            <polymorphic>TTTTCCGGGTATCCGTATGGGAAGAACACTTCTTCGTCCTTCTTGATATCTTGATCAGCAACAAATGCCACTCGTGGCTCTCCTTTTGACGTTCGGAAGATAGTGGTGAGATTTGGCGTGTCCGAGTGATTGATGAAGCGTGTCTCATTTCCGGCTTTAGCGGAATCAAGTGCCCCGATGGAATACGGCAGATCTGAAAATTATTTGTTAAAATGGTCAATTGCTAACGATAGAAACTGACGATAGACATAGCTGATGCCAAAATGATACACCTTTCCTCTTCTCTCAACTTCATCTTCATTTATCTGCTCTCCAGTATATTCTCCAACGATCTCGCCCTTTTTGATGTCCCTCTTCGCGACCGCTCCAAATCCAGCTCCCAGAACTTTGGACTTTGTGACTTTCAAAAGAGTTTCTACTGGACGCTGGAACACGAAATTGCCACATTTCCGATCCATGGGCACGTTTCCTAAAATTTGAGAATTACGAAAACATATGAYTTGGGACAACTCACTATCATCCTCGTGGTCCAAGCATCTGTAGCATAGGCCCTTTTCGCATTCGTTCCTTTGTCGGATACATTGACAGTCTTCAGTTTGACACTGACCAGGTGGACAGTCGCATCCTGGGAACCGACGAGGGCAGTCGATGTCGCATTCACATCGGAGGGAACAAAAGTCCTTGCAGTCACAATCCTCGGCAAACGGTCCGCATCGGCCGAAATGGGAGCACGGACCAGATAACGACTCATGGTCCACTTCCTTTTTAAGCTCGGCCTTGAGAGCCTCGATTTCTTCAGGTGTTTTACCATTTTCACTTGCAGTTCGAATCTTTCTGTAGTGGCGAAAATACCTCTTTTTATCCTTTTTCGCATAATGCTCTTGTCCATCCCTGATGAATTTCTTGAATCGCTCTTTGAAGGGTCTGAAAACAACTTTTTTTAAAAATTGAGGGTTTCTTGGTTCTAACCCAAAATAAAAGCCCTTTAGAAAAACGGACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTTTTGATGTCCCTCTTC</pcr_primer_p1>
		<pcr_primer_p2>CTGTCAATGTATCCGACAAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCTTTTTGATGTCCCTCTTCGCGACCGCTCCAAATCCAGCTCCCAGAACTTTGGACTTTGTGACTTTCAAAAGAGTTTCTACTGGACGCTGGAACACGAAATTGCCACATTTCCGATCCATGGGCACGTTTCCTAAAATTTGAGAATTACGAAAACATATGATTTGGGACAACTCACTATCATCCTCGTGGTCCAAGCATCTGTAGCATAGGCCCTTTTCGCATTCGTTCCTTTGTCGGATACATTGACAG</canonical_amplicon>
		<polymorphic_amplicon>CCTTTTTGATGTCCCTCTTCGCGACCGCTCCAAATCCAGCTCCCAGAACTTTGGACTTTGTGACTTTCAAAAGAGTTTCTACTGGACGCTGGAACACGAAATTGCCACATTTCCGATCCATGGGCACGTTTCCTAAAATTTGAGAATTACGAAAACATATGAYTTGGGACAACTCACTATCATCCTCGTGGTCCAAGCATCTGTAGCATAGGCCCTTTTCGCATTCGTTCCTTTGTCGGATACATTGACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28781</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>154891</contig_pos>
        <strand>+</strand>
        <context>AAGCATCTGT[A/G]GCATAGRCCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATATGATTTGGGACAACTCACTATCATCCTCGTGGTCCAAGCATCTGT</left_flank>
        <right_flank>GCATAGGCCCTTTTCGCATTCGTTCCTTTGTCGGATACATTGACAGTCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGATATCTTGATCAGCAACAAATGCCACTCGTGGCTCTCCTTTTGACGTTCGGAAGATAGTGGTGAGATTTGGCGTGTCCGAGTGATTGATGAAGCGTGTCTCATTTCCGGCTTTAGCGGAATCAAGTGCCCCGATGGAATACGGCAGATCTGAAAATTATTTGTTAAAATGGTCAATTGCTAACGATAGAAACTGACGATAGACATAGCTGATGCCAAAATGATACACCTTTCCTCTTCTCTCAACTTCATCTTCATTTATCTGCTCTCCAGTATATTCTCCAACGATCTCGCCCTTTTTGATGTCCCTCTTCGCGACCGCTCCAAATCCAGCTCCCAGAACTTTGGACTTTGTGACTTTCAAAAGAGTTTCTACTGGACGCTGGAACACGAAATTGCCACATTTCCGATCCATGGGCACGTTTCCTAAAATTTGAGAATTACGAAAACATATGATTTGGGACAACTCACTATCATCCTCGTGGTCCAAGCATCTGTAGCATAGGCCCTTTTCGCATTCGTTCCTTTGTCGGATACATTGACAGTCTTCAGTTTGACACTGACCAGGTGGACAGTCGCATCCTGGGAACCGACGAGGGCAGTCGATGTCGCATTCACATCGGAGGGAACAAAAGTCCTTGCAGTCACAATCCTCGGCAAACGGTCCGCATCGGCCGAAATGGGAGCACGGACCAGATAACGACTCATGGTCCACTTCCTTTTTAAGCTCGGCCTTGAGAGCCTCGATTTCTTCAGGTGTTTTACCATTTTCACTTGCAGTTCGAATCTTTCTGTAGTGGCGAAAATACCTCTTTTTATCCTTTTTCGCATAATGCTCTTGTCCATCCCTGATGAATTTCTTGAATCGCTCTTTGAAGGGTCTGAAAACAACTTTTTTTAAAAATTGAGGGTTTCTTGGTTCTAACCCAAAATAAAAGCCCTTTAGAAAAACGGACTGTCAATTAAAATAATGCTACCGTAAAACCTCTAATAGAACGA</canonical>
            <polymorphic>TTGATATCTTGATCAGCAACAAATGCCACTCGTGGCTCTCCTTTTGACGTTCGGAAGATAGTGGTGAGATTTGGCGTGTCCGAGTGATTGATGAAGCGTGTCTCATTTCCGGCTTTAGCGGAATCAAGTGCCCCGATGGAATACGGCAGATCTGAAAATTATTTGTTAAAATGGTCAATTGCTAACGATAGAAACTGACGATAGACATAGCTGATGCCAAAATGATACACCTTTCCTCTTCTCTCAACTTCATCTTCATTTATCTGCTCTCCAGTATATTCTCCAACGATCTCGCCCTTTTTGATGTCCCTCTTCGCGACCGCTCCAAATCCAGCTCCCAGAACTTTGGACTTTGTGACTTTCAAAAGAGTTTCTACTGGACGCTGGAACACGAAATTGCCACATTTCCGATCCATGGGCACGTTTCCTAAAATTTGAGAATTACGAAAACATATGATTTGGGACAACTCACTATCATCCTCGTGGTCCAAGCATCTGTRGCATAGGCCCTTTTCGCATTCGTTCCTTTGTCGGATACATTGACAGTCTTCAGTTTGACACTGACCAGGTGGACAGTCGCATCCTGGGAACCGACGAGGGCAGTCGATGTCGCATTCACATCGGAGGGAACAAAAGTCCTTGCAGTCACAATCCTCGGCAAACGGTCCGCATCGGCCGAAATGGGAGCACGGACCAGATAACGACTCATGGTCCACTTCCTTTTTAAGCTCGGCCTTGAGAGCCTCGATTTCTTCAGGTGTTTTACCATTTTCACTTGCAGTTCGAATCTTTCTGTAGTGGCGAAAATACCTCTTTTTATCCTTTTTCGCATAATGCTCTTGTCCATCCCTGATGAATTTCTTGAATCGCTCTTTGAAGGGTCTGAAAACAACTTTTTTTAAAAATTGAGGGTTTCTTGGTTCTAACCCAAAATAAAAGCCCTTTAGAAAAACGGACTGTCAATTAAAATAATGCTACCGTAAAACCTCTAATAGAACGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>496 297 207</canonical_bands>
                <polymorphic_bands>793 207</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAACTTTGGACTTTGTGACTTT</pcr_primer_p1>
		<pcr_primer_p2>TCAAACTGAAGACTGTCAATGTA</pcr_primer_p2>
		<pcr_amplicon_size>219</pcr_amplicon_size>
		<canonical_amplicon>AGAACTTTGGACTTTGTGACTTTCAAAAGAGTTTCTACTGGACGCTGGAACACGAAATTGCCACATTTCCGATCCATGGGCACGTTTCCTAAAATTTGAGAATTACGAAAACATATGATTTGGGACAACTCACTATCATCCTCGTGGTCCAAGCATCTGTAGCATAGGCCCTTTTCGCATTCGTTCCTTTGTCGGATACATTGACAGTCTTCAGTTTGA</canonical_amplicon>
		<polymorphic_amplicon>AGAACTTTGGACTTTGTGACTTTCAAAAGAGTTTCTACTGGACGCTGGAACACGAAATTGCCACATTTCCGATCCATGGGCACGTTTCCTAAAATTTGAGAATTACGAAAACATATGATTTGGGACAACTCACTATCATCCTCGTGGTCCAAGCATCTGTRGCATAGGCCCTTTTCGCATTCGTTCCTTTGTCGGATACATTGACAGTCTTCAGTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28782</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>154898</contig_pos>
        <strand>+</strand>
        <context>TGTRGCATAG[A/G]CCCTTTTCGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTGGGACAACTCACTATCATCCTCGTGGTCCAAGCATCTGTAGCATAG</left_flank>
        <right_flank>CCCTTTTCGCATTCGTTCCTTTGTCGGATACATTGACAGTCTTCAGTTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTGATCAGCAACAAATGCCACTCGTGGCTCTCCTTTTGACGTTCGGAAGATAGTGGTGAGATTTGGCGTGTCCGAGTGATTGATGAAGCGTGTCTCATTTCCGGCTTTAGCGGAATCAAGTGCCCCGATGGAATACGGCAGATCTGAAAATTATTTGTTAAAATGGTCAATTGCTAACGATAGAAACTGACGATAGACATAGCTGATGCCAAAATGATACACCTTTCCTCTTCTCTCAACTTCATCTTCATTTATCTGCTCTCCAGTATATTCTCCAACGATCTCGCCCTTTTTGATGTCCCTCTTCGCGACCGCTCCAAATCCAGCTCCCAGAACTTTGGACTTTGTGACTTTCAAAAGAGTTTCTACTGGACGCTGGAACACGAAATTGCCACATTTCCGATCCATGGGCACGTTTCCTAAAATTTGAGAATTACGAAAACATATGATTTGGGACAACTCACTATCATCCTCGTGGTCCAAGCATCTGTAGCATAGGCCCTTTTCGCATTCGTTCCTTTGTCGGATACATTGACAGTCTTCAGTTTGACACTGACCAGGTGGACAGTCGCATCCTGGGAACCGACGAGGGCAGTCGATGTCGCATTCACATCGGAGGGAACAAAAGTCCTTGCAGTCACAATCCTCGGCAAACGGTCCGCATCGGCCGAAATGGGAGCACGGACCAGATAACGACTCATGGTCCACTTCCTTTTTAAGCTCGGCCTTGAGAGCCTCGATTTCTTCAGGTGTTTTACCATTTTCACTTGCAGTTCGAATCTTTCTGTAGTGGCGAAAATACCTCTTTTTATCCTTTTTCGCATAATGCTCTTGTCCATCCCTGATGAATTTCTTGAATCGCTCTTTGAAGGGTCTGAAAACAACTTTTTTTAAAAATTGAGGGTTTCTTGGTTCTAACCCAAAATAAAAGCCCTTTAGAAAAACGGACTGTCAATTAAAATAATGCTACCGTAAAACCTCTAATAGAACGACACCCGG</canonical>
            <polymorphic>CTTGATCAGCAACAAATGCCACTCGTGGCTCTCCTTTTGACGTTCGGAAGATAGTGGTGAGATTTGGCGTGTCCGAGTGATTGATGAAGCGTGTCTCATTTCCGGCTTTAGCGGAATCAAGTGCCCCGATGGAATACGGCAGATCTGAAAATTATTTGTTAAAATGGTCAATTGCTAACGATAGAAACTGACGATAGACATAGCTGATGCCAAAATGATACACCTTTCCTCTTCTCTCAACTTCATCTTCATTTATCTGCTCTCCAGTATATTCTCCAACGATCTCGCCCTTTTTGATGTCCCTCTTCGCGACCGCTCCAAATCCAGCTCCCAGAACTTTGGACTTTGTGACTTTCAAAAGAGTTTCTACTGGACGCTGGAACACGAAATTGCCACATTTCCGATCCATGGGCACGTTTCCTAAAATTTGAGAATTACGAAAACATATGATTTGGGACAACTCACTATCATCCTCGTGGTCCAAGCATCTGTAGCATAGRCCCTTTTCGCATTCGTTCCTTTGTCGGATACATTGACAGTCTTCAGTTTGACACTGACCAGGTGGACAGTCGCATCCTGGGAACCGACGAGGGCAGTCGATGTCGCATTCACATCGGAGGGAACAAAAGTCCTTGCAGTCACAATCCTCGGCAAACGGTCCGCATCGGCCGAAATGGGAGCACGGACCAGATAACGACTCATGGTCCACTTCCTTTTTAAGCTCGGCCTTGAGAGCCTCGATTTCTTCAGGTGTTTTACCATTTTCACTTGCAGTTCGAATCTTTCTGTAGTGGCGAAAATACCTCTTTTTATCCTTTTTCGCATAATGCTCTTGTCCATCCCTGATGAATTTCTTGAATCGCTCTTTGAAGGGTCTGAAAACAACTTTTTTTAAAAATTGAGGGTTTCTTGGTTCTAACCCAAAATAAAAGCCCTTTAGAAAAACGGACTGTCAATTAAAATAATGCTACCGTAAAACCTCTAATAGAACGACACCCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>478 297 158 27 21 19</canonical_bands>
                <polymorphic_bands>478 297 179 27 19</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 274 168 58</canonical_bands>
                <polymorphic_bands>668 274 58</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>476 268 226 15 15</canonical_bands>
                <polymorphic_bands>476 268 241 15</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>197 173 168 124 98 77 68 53 28 9 5</canonical_bands>
                <polymorphic_bands>341 197 124 98 77 68 53 28 9 5</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAACTTTGGACTTTGTGACTTT</pcr_primer_p1>
		<pcr_primer_p2>GTGTCAAACTGAAGACTGTCAA</pcr_primer_p2>
		<pcr_amplicon_size>222</pcr_amplicon_size>
		<canonical_amplicon>AGAACTTTGGACTTTGTGACTTTCAAAAGAGTTTCTACTGGACGCTGGAACACGAAATTGCCACATTTCCGATCCATGGGCACGTTTCCTAAAATTTGAGAATTACGAAAACATATGATTTGGGACAACTCACTATCATCCTCGTGGTCCAAGCATCTGTAGCATAGGCCCTTTTCGCATTCGTTCCTTTGTCGGATACATTGACAGTCTTCAGTTTGACAC</canonical_amplicon>
		<polymorphic_amplicon>AGAACTTTGGACTTTGTGACTTTCAAAAGAGTTTCTACTGGACGCTGGAACACGAAATTGCCACATTTCCGATCCATGGGCACGTTTCCTAAAATTTGAGAATTACGAAAACATATGATTTGGGACAACTCACTATCATCCTCGTGGTCCAAGCATCTGTAGCATAGRCCCTTTTCGCATTCGTTCCTTTGTCGGATACATTGACAGTCTTCAGTTTGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28783</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>158245</contig_pos>
        <strand>+</strand>
        <context>TGATACTCTA[A/T]AAAgatatat</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTGTCAAAACATTCAGAAATATCACTGAATTCAAAATGTTGATACTCTA</left_flank>
        <right_flank>AAAGATATATTTCATTTAAGTGAATTTTTACGAACAAAGTCGTCAACTGC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTACAAGCGAAACTTTTCGACATATTACAAAGTCTAGTTTATCGACCTGAATTTTGCTAATTTTCATTAAAAATAAGCTACATTAAAGTTTTTAAAATATAGTAGATTTTATTGAAATTTCCTGAAAACTTGCATGTCTTTTAAACAATAATATACTATATTTCCTCTAATAGAAGCCCATCCAAACCATCAACTCTGAGCTCAATTATCTCGGTTTTTGTAAAAGATGCCAAAAATGTGTCAACTGAAAAATTATTAAACATAAAATCACCCATATTTTATCAGTTGTCACATTTTCGACATCTGTCACATAAATTGAGATAATTGAGCTCAAAGTTGAGGGCTTGGACGGGCTTCTATTAGAGGAAATACGGTAGGTTAAAATTAACAGTTGACAACTTTTTCGTAAAAATTCCTCTGAATCAGATATACTCCTTGAAACGAACCAAGTGTCAAAACATTCAGAAATATCACTGAATTCAAAATGTTGATACTCTATAAAGATATATTTCATTTAAGTGAATTTTTACGAACAAAGTCGTCAACTGCAAAATAGAAGATTTATTTTTGTTCACTGGACATAAGTATTCTCAGATTCGTTCGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTTTGATTTTCTAACGAAAATAGACAAAGTAGGTCATTTTTGGTATTTTTAGTATTGATTGAATTTGAAATTTGTGAAGTATTTACAATTTTGTAAATTTTCTCACCTCGCGTAGCTTGTGGTTCACAATTCTATCATCAGCTTCCTCTTTTAGCAAAATTGTGCCATAGTGGATGTCACAATTCTTCGTTATTACGTTTTGATCCAGGTGCTGGTAGAATTTGGGAACCTCAATCACTCGATCCTGAAAATAATAATCGAAAGTTTGAATCTTTAAAAGTTTCTATGAAGTTATCACTTACTGGAACATTGCGAACCAATCTGTTTTTGAGACTGGTCAAGTTTCTGGAGAAGGTGTCGG</canonical>
            <polymorphic>TGTACAAGCGAAACTTTTCGACATATTACAAAGTCTAGTTTATCGACCTGAATTTTGCTAATTTTCATTAAAAATAAGCTACATTAAAGTTTTTAAAATATAGTAGATTTTATTGAAATTTCCTGAAAACTTGCATGTCTTTTAAACAATAATATACTATATTTCCTCTAATAGAAGCCCATCCAAACCATCAACTCTGAGCTCAATTATCTCGGTTTTTGTAAAAGATGCCAAAAATGTGTCAACTGAAAAATTATTAAACATAAAATCACCCATATTTTATCAGTTGTCACATTTTCGACATCTGTCACATAAATTGAGATAATTGAGCTCAAAGTTGAGGGCTTGGACGGGCTTCTATTAGAGGAAATACGGTAGGTTAAAATTAACAGTTGACAACTTTTTCGTAAAAATTCCTCTGAATCAGATATACTCCTTGAAACGAACCAAGTGTCAAAACATTCAGAAATATCACTGAATTCAAAATGTTGATACTCTAWAAAGATATATTTCATTTAAGTGAATTTTTACGAACAAAGTCGTCAACTGCAAAATAGAAGATTTATTTTTGTTCACTGGACATAAGTATTCTCAGATTCGTTCGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTTTGATTTTCTAACGAAAATAGACAAAGTAGGTCATTTTTGGTATTTTTAGTATTGATTGAATTTGAAATTTGTGAAGTATTTACAATTTTGTAAATTTTCTCACCTCGCGTAGCTTGTGGTTCACAATTCTATCATCAGCTTCCTCTTTTAGCAAAATTGTGCCATAGTGGATGTCACAATTCTTCGTTATTACGTTTTGATCCAGGTGCTGGTAGAATTTGGGAACCTCAATCACTCGATCCTGAAAATAATAATCGAAAGTTTGAATCTTTAAAAGTTTCTATGAAGTTATCACTTACTGGAACATTGCGAACCAATCTGTTTTTGAGACTGGTCAAGTTTCTGGAGAAGGTGTCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGTGTCAAAACATTCAGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCAATACTAAAAATACCAAAAATGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAGTGTCAAAACATTCAGAAATATCACTGAATTCAAAATGTTGATACTCTATAAAGATATATTTCATTTAAGTGAATTTTTACGAACAAAGTCGTCAACTGCAAAATAGAAGATTTATTTTTGTTCACTGGACATAAGTATTCTCAGATTCGTTCGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTTTGATTTTCTAACGAAAATAGACAAAGTAGGTCATTTTTGGTATTTTTAGTATTGA</canonical_amplicon>
		<polymorphic_amplicon>CAAGTGTCAAAACATTCAGAAATATCACTGAATTCAAAATGTTGATACTCTAWAAAGATATATTTCATTTAAGTGAATTTTTACGAACAAAGTCGTCAACTGCAAAATAGAAGATTTATTTTTGTTCACTGGACATAAGTATTCTCAGATTCGTTCGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTTTGATTTTCTAACGAAAATAGACAAAGTAGGTCATTTTTGGTATTTTTAGTATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28784</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>158388</contig_pos>
        <strand>+</strand>
        <context>tcaaCATTTT[C/T]KATTTTCTAW</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGATTCGTTCGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTT</left_flank>
        <right_flank>GATTTTCTAACGAAAATAGACAAAGTAGGTCATTTTTGGTATTTTTAGTA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACAATAATATACTATATTTCCTCTAATAGAAGCCCATCCAAACCATCAACTCTGAGCTCAATTATCTCGGTTTTTGTAAAAGATGCCAAAAATGTGTCAACTGAAAAATTATTAAACATAAAATCACCCATATTTTATCAGTTGTCACATTTTCGACATCTGTCACATAAATTGAGATAATTGAGCTCAAAGTTGAGGGCTTGGACGGGCTTCTATTAGAGGAAATACGGTAGGTTAAAATTAACAGTTGACAACTTTTTCGTAAAAATTCCTCTGAATCAGATATACTCCTTGAAACGAACCAAGTGTCAAAACATTCAGAAATATCACTGAATTCAAAATGTTGATACTCTATAAAGATATATTTCATTTAAGTGAATTTTTACGAACAAAGTCGTCAACTGCAAAATAGAAGATTTATTTTTGTTCACTGGACATAAGTATTCTCAGATTCGTTCGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTTTGATTTTCTAACGAAAATAGACAAAGTAGGTCATTTTTGGTATTTTTAGTATTGATTGAATTTGAAATTTGTGAAGTATTTACAATTTTGTAAATTTTCTCACCTCGCGTAGCTTGTGGTTCACAATTCTATCATCAGCTTCCTCTTTTAGCAAAATTGTGCCATAGTGGATGTCACAATTCTTCGTTATTACGTTTTGATCCAGGTGCTGGTAGAATTTGGGAACCTCAATCACTCGATCCTGAAAATAATAATCGAAAGTTTGAATCTTTAAAAGTTTCTATGAAGTTATCACTTACTGGAACATTGCGAACCAATCTGTTTTTGAGACTGGTCAAGTTTCTGGAGAAGGTGTCGGTCTGTGTTTGCTGGAATAGTTAGTTCGTTAAAGAAATAAAAAAAATTATCATGTTACAACTCACGAGATTGGTTGAGATCTGTTGTCCAGTCCCAGCAGAAATTTCCCTCATCAATTCCTCGGCATCCAACTCTTCCTGCTCC</canonical>
            <polymorphic>AAACAATAATATACTATATTTCCTCTAATAGAAGCCCATCCAAACCATCAACTCTGAGCTCAATTATCTCGGTTTTTGTAAAAGATGCCAAAAATGTGTCAACTGAAAAATTATTAAACATAAAATCACCCATATTTTATCAGTTGTCACATTTTCGACATCTGTCACATAAATTGAGATAATTGAGCTCAAAGTTGAGGGCTTGGACGGGCTTCTATTAGAGGAAATACGGTAGGTTAAAATTAACAGTTGACAACTTTTTCGTAAAAATTCCTCTGAATCAGATATACTCCTTGAAACGAACCAAGTGTCAAAACATTCAGAAATATCACTGAATTCAAAATGTTGATACTCTATAAAGATATATTTCATTTAAGTGAATTTTTACGAACAAAGTCGTCAACTGCAAAATAGAAGATTTATTTTTGTTCACTGGACATAAGTATTCTCAGATTCGTTCGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTTYGATTTTCTAACGAAAATAGACAAAGTAGGTCATTTTTGGTATTTTTAGTATTGATTGAATTTGAAATTTGTGAAGTATTTACAATTTTGTAAATTTTCTCACCTCGCGTAGCTTGTGGTTCACAATTCTATCATCAGCTTCCTCTTTTAGCAAAATTGTGCCATAGTGGATGTCACAATTCTTCGTTATTACGTTTTGATCCAGGTGCTGGTAGAATTTGGGAACCTCAATCACTCGATCCTGAAAATAATAATCGAAAGTTTGAATCTTTAAAAGTTTCTATGAAGTTATCACTTACTGGAACATTGCGAACCAATCTGTTTTTGAGACTGGTCAAGTTTCTGGAGAAGGTGTCGGTCTGTGTTTGCTGGAATAGTTAGTTCGTTAAAGAAATAAAAAAAATTATCATGTTACAACTCACGAGATTGGTTGAGATCTGTTGTCCAGTCCCAGCAGAAATTTCCCTCATCAATTCCTCGGCATCCAACTCTTCCTGCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCAAAACATTCAGAAATATCA</pcr_primer_p1>
		<pcr_primer_p2>TCAATCAATACTAAAAATACCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTCAAAACATTCAGAAATATCACTGAATTCAAAATGTTGATACTCTATAAAGATATATTTCATTTAAGTGAATTTTTACGAACAAAGTCGTCAACTGCAAAATAGAAGATTTATTTTTGTTCACTGGACATAAGTATTCTCAGATTCGTTCGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTTTGATTTTCTAACGAAAATAGACAAAGTAGGTCATTTTTGGTATTTTTAGTATTGATTGA</canonical_amplicon>
		<polymorphic_amplicon>TGTCAAAACATTCAGAAATATCACTGAATTCAAAATGTTGATACTCTATAAAGATATATTTCATTTAAGTGAATTTTTACGAACAAAGTCGTCAACTGCAAAATAGAAGATTTATTTTTGTTCACTGGACATAAGTATTCTCAGATTCGTTCGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTTYGATTTTCTAACGAAAATAGACAAAGTAGGTCATTTTTGGTATTTTTAGTATTGATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28785</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>158389</contig_pos>
        <strand>+</strand>
        <context>caaCATTTTY[G/T]ATTTTCTAWC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGATTCGTTCGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTTT</left_flank>
        <right_flank>ATTTTCTAACGAAAATAGACAAAGTAGGTCATTTTTGGTATTTTTAGTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAATAATATACTATATTTCCTCTAATAGAAGCCCATCCAAACCATCAACTCTGAGCTCAATTATCTCGGTTTTTGTAAAAGATGCCAAAAATGTGTCAACTGAAAAATTATTAAACATAAAATCACCCATATTTTATCAGTTGTCACATTTTCGACATCTGTCACATAAATTGAGATAATTGAGCTCAAAGTTGAGGGCTTGGACGGGCTTCTATTAGAGGAAATACGGTAGGTTAAAATTAACAGTTGACAACTTTTTCGTAAAAATTCCTCTGAATCAGATATACTCCTTGAAACGAACCAAGTGTCAAAACATTCAGAAATATCACTGAATTCAAAATGTTGATACTCTATAAAGATATATTTCATTTAAGTGAATTTTTACGAACAAAGTCGTCAACTGCAAAATAGAAGATTTATTTTTGTTCACTGGACATAAGTATTCTCAGATTCGTTCGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTTTGATTTTCTAACGAAAATAGACAAAGTAGGTCATTTTTGGTATTTTTAGTATTGATTGAATTTGAAATTTGTGAAGTATTTACAATTTTGTAAATTTTCTCACCTCGCGTAGCTTGTGGTTCACAATTCTATCATCAGCTTCCTCTTTTAGCAAAATTGTGCCATAGTGGATGTCACAATTCTTCGTTATTACGTTTTGATCCAGGTGCTGGTAGAATTTGGGAACCTCAATCACTCGATCCTGAAAATAATAATCGAAAGTTTGAATCTTTAAAAGTTTCTATGAAGTTATCACTTACTGGAACATTGCGAACCAATCTGTTTTTGAGACTGGTCAAGTTTCTGGAGAAGGTGTCGGTCTGTGTTTGCTGGAATAGTTAGTTCGTTAAAGAAATAAAAAAAATTATCATGTTACAACTCACGAGATTGGTTGAGATCTGTTGTCCAGTCCCAGCAGAAATTTCCCTCATCAATTCCTCGGCATCCAACTCTTCCTGCTCCA</canonical>
            <polymorphic>AACAATAATATACTATATTTCCTCTAATAGAAGCCCATCCAAACCATCAACTCTGAGCTCAATTATCTCGGTTTTTGTAAAAGATGCCAAAAATGTGTCAACTGAAAAATTATTAAACATAAAATCACCCATATTTTATCAGTTGTCACATTTTCGACATCTGTCACATAAATTGAGATAATTGAGCTCAAAGTTGAGGGCTTGGACGGGCTTCTATTAGAGGAAATACGGTAGGTTAAAATTAACAGTTGACAACTTTTTCGTAAAAATTCCTCTGAATCAGATATACTCCTTGAAACGAACCAAGTGTCAAAACATTCAGAAATATCACTGAATTCAAAATGTTGATACTCTATAAAGATATATTTCATTTAAGTGAATTTTTACGAACAAAGTCGTCAACTGCAAAATAGAAGATTTATTTTTGTTCACTGGACATAAGTATTCTCAGATTCGTTCGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTTTKATTTTCTAACGAAAATAGACAAAGTAGGTCATTTTTGGTATTTTTAGTATTGATTGAATTTGAAATTTGTGAAGTATTTACAATTTTGTAAATTTTCTCACCTCGCGTAGCTTGTGGTTCACAATTCTATCATCAGCTTCCTCTTTTAGCAAAATTGTGCCATAGTGGATGTCACAATTCTTCGTTATTACGTTTTGATCCAGGTGCTGGTAGAATTTGGGAACCTCAATCACTCGATCCTGAAAATAATAATCGAAAGTTTGAATCTTTAAAAGTTTCTATGAAGTTATCACTTACTGGAACATTGCGAACCAATCTGTTTTTGAGACTGGTCAAGTTTCTGGAGAAGGTGTCGGTCTGTGTTTGCTGGAATAGTTAGTTCGTTAAAGAAATAAAAAAAATTATCATGTTACAACTCACGAGATTGGTTGAGATCTGTTGTCCAGTCCCAGCAGAAATTTCCCTCATCAATTCCTCGGCATCCAACTCTTCCTGCTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCAAAACATTCAGAAATATCA</pcr_primer_p1>
		<pcr_primer_p2>TCAATCAATACTAAAAATACCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTCAAAACATTCAGAAATATCACTGAATTCAAAATGTTGATACTCTATAAAGATATATTTCATTTAAGTGAATTTTTACGAACAAAGTCGTCAACTGCAAAATAGAAGATTTATTTTTGTTCACTGGACATAAGTATTCTCAGATTCGTTCGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTTTGATTTTCTAACGAAAATAGACAAAGTAGGTCATTTTTGGTATTTTTAGTATTGATTGA</canonical_amplicon>
		<polymorphic_amplicon>TGTCAAAACATTCAGAAATATCACTGAATTCAAAATGTTGATACTCTATAAAGATATATTTCATTTAAGTGAATTTTTACGAACAAAGTCGTCAACTGCAAAATAGAAGATTTATTTTTGTTCACTGGACATAAGTATTCTCAGATTCGTTCGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTTTKATTTTCTAACGAAAATAGACAAAGTAGGTCATTTTTGGTATTTTTAGTATTGATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28786</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>158398</contig_pos>
        <strand>+</strand>
        <context>YKATTTTCTA[A/T]CGAAAATAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTTTGATTTTCTA</left_flank>
        <right_flank>CGAAAATAGACAAAGTAGGTCATTTTTGGTATTTTTAGTATTGATTGAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATACTATATTTCCTCTAATAGAAGCCCATCCAAACCATCAACTCTGAGCTCAATTATCTCGGTTTTTGTAAAAGATGCCAAAAATGTGTCAACTGAAAAATTATTAAACATAAAATCACCCATATTTTATCAGTTGTCACATTTTCGACATCTGTCACATAAATTGAGATAATTGAGCTCAAAGTTGAGGGCTTGGACGGGCTTCTATTAGAGGAAATACGGTAGGTTAAAATTAACAGTTGACAACTTTTTCGTAAAAATTCCTCTGAATCAGATATACTCCTTGAAACGAACCAAGTGTCAAAACATTCAGAAATATCACTGAATTCAAAATGTTGATACTCTATAAAGATATATTTCATTTAAGTGAATTTTTACGAACAAAGTCGTCAACTGCAAAATAGAAGATTTATTTTTGTTCACTGGACATAAGTATTCTCAGATTCGTTCGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTTTGATTTTCTAACGAAAATAGACAAAGTAGGTCATTTTTGGTATTTTTAGTATTGATTGAATTTGAAATTTGTGAAGTATTTACAATTTTGTAAATTTTCTCACCTCGCGTAGCTTGTGGTTCACAATTCTATCATCAGCTTCCTCTTTTAGCAAAATTGTGCCATAGTGGATGTCACAATTCTTCGTTATTACGTTTTGATCCAGGTGCTGGTAGAATTTGGGAACCTCAATCACTCGATCCTGAAAATAATAATCGAAAGTTTGAATCTTTAAAAGTTTCTATGAAGTTATCACTTACTGGAACATTGCGAACCAATCTGTTTTTGAGACTGGTCAAGTTTCTGGAGAAGGTGTCGGTCTGTGTTTGCTGGAATAGTTAGTTCGTTAAAGAAATAAAAAAAATTATCATGTTACAACTCACGAGATTGGTTGAGATCTGTTGTCCAGTCCCAGCAGAAATTTCCCTCATCAATTCCTCGGCATCCAACTCTTCCTGCTCCATTATTGGCT</canonical>
            <polymorphic>ATACTATATTTCCTCTAATAGAAGCCCATCCAAACCATCAACTCTGAGCTCAATTATCTCGGTTTTTGTAAAAGATGCCAAAAATGTGTCAACTGAAAAATTATTAAACATAAAATCACCCATATTTTATCAGTTGTCACATTTTCGACATCTGTCACATAAATTGAGATAATTGAGCTCAAAGTTGAGGGCTTGGACGGGCTTCTATTAGAGGAAATACGGTAGGTTAAAATTAACAGTTGACAACTTTTTCGTAAAAATTCCTCTGAATCAGATATACTCCTTGAAACGAACCAAGTGTCAAAACATTCAGAAATATCACTGAATTCAAAATGTTGATACTCTATAAAGATATATTTCATTTAAGTGAATTTTTACGAACAAAGTCGTCAACTGCAAAATAGAAGATTTATTTTTGTTCACTGGACATAAGTATTCTCAGATTCGTTCGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTTTGATTTTCTAWCGAAAATAGACAAAGTAGGTCATTTTTGGTATTTTTAGTATTGATTGAATTTGAAATTTGTGAAGTATTTACAATTTTGTAAATTTTCTCACCTCGCGTAGCTTGTGGTTCACAATTCTATCATCAGCTTCCTCTTTTAGCAAAATTGTGCCATAGTGGATGTCACAATTCTTCGTTATTACGTTTTGATCCAGGTGCTGGTAGAATTTGGGAACCTCAATCACTCGATCCTGAAAATAATAATCGAAAGTTTGAATCTTTAAAAGTTTCTATGAAGTTATCACTTACTGGAACATTGCGAACCAATCTGTTTTTGAGACTGGTCAAGTTTCTGGAGAAGGTGTCGGTCTGTGTTTGCTGGAATAGTTAGTTCGTTAAAGAAATAAAAAAAATTATCATGTTACAACTCACGAGATTGGTTGAGATCTGTTGTCCAGTCCCAGCAGAAATTTCCCTCATCAATTCCTCGGCATCCAACTCTTCCTGCTCCATTATTGGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAATATCACTGAATTCAAAATG</pcr_primer_p1>
		<pcr_primer_p2>CGAGGTGAGAAAATTTACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>AGAAATATCACTGAATTCAAAATGTTGATACTCTATAAAGATATATTTCATTTAAGTGAATTTTTACGAACAAAGTCGTCAACTGCAAAATAGAAGATTTATTTTTGTTCACTGGACATAAGTATTCTCAGATTCGTTCGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTTTGATTTTCTAACGAAAATAGACAAAGTAGGTCATTTTTGGTATTTTTAGTATTGATTGAATTTGAAATTTGTGAAGTATTTACAATTTTGTAAATTTTCTCACCTCG</canonical_amplicon>
		<polymorphic_amplicon>AGAAATATCACTGAATTCAAAATGTTGATACTCTATAAAGATATATTTCATTTAAGTGAATTTTTACGAACAAAGTCGTCAACTGCAAAATAGAAGATTTATTTTTGTTCACTGGACATAAGTATTCTCAGATTCGTTCGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTTTGATTTTCTAWCGAAAATAGACAAAGTAGGTCATTTTTGGTATTTTTAGTATTGATTGAATTTGAAATTTGTGAAGTATTTACAATTTTGTAAATTTTCTCACCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28787</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>158416</contig_pos>
        <strand>+</strand>
        <context>AGACAAAGTA[G/T]GTCATTTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTTTAGACATTCAACATTTTTGATTTTCTAACGAAAATAGACAAAGTA</left_flank>
        <right_flank>GTCATTTTTGGTATTTTTAGTATTGATTGAATTTGAAATTTGTGAAGTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAAGCCCATCCAAACCATCAACTCTGAGCTCAATTATCTCGGTTTTTGTAAAAGATGCCAAAAATGTGTCAACTGAAAAATTATTAAACATAAAATCACCCATATTTTATCAGTTGTCACATTTTCGACATCTGTCACATAAATTGAGATAATTGAGCTCAAAGTTGAGGGCTTGGACGGGCTTCTATTAGAGGAAATACGGTAGGTTAAAATTAACAGTTGACAACTTTTTCGTAAAAATTCCTCTGAATCAGATATACTCCTTGAAACGAACCAAGTGTCAAAACATTCAGAAATATCACTGAATTCAAAATGTTGATACTCTATAAAGATATATTTCATTTAAGTGAATTTTTACGAACAAAGTCGTCAACTGCAAAATAGAAGATTTATTTTTGTTCACTGGACATAAGTATTCTCAGATTCGTTCGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTTTGATTTTCTAACGAAAATAGACAAAGTAGGTCATTTTTGGTATTTTTAGTATTGATTGAATTTGAAATTTGTGAAGTATTTACAATTTTGTAAATTTTCTCACCTCGCGTAGCTTGTGGTTCACAATTCTATCATCAGCTTCCTCTTTTAGCAAAATTGTGCCATAGTGGATGTCACAATTCTTCGTTATTACGTTTTGATCCAGGTGCTGGTAGAATTTGGGAACCTCAATCACTCGATCCTGAAAATAATAATCGAAAGTTTGAATCTTTAAAAGTTTCTATGAAGTTATCACTTACTGGAACATTGCGAACCAATCTGTTTTTGAGACTGGTCAAGTTTCTGGAGAAGGTGTCGGTCTGTGTTTGCTGGAATAGTTAGTTCGTTAAAGAAATAAAAAAAATTATCATGTTACAACTCACGAGATTGGTTGAGATCTGTTGTCCAGTCCCAGCAGAAATTTCCCTCATCAATTCCTCGGCATCCAACTCTTCCTGCTCCATTATTGGCTGAGCTTCCTTCTGAATCA</canonical>
            <polymorphic>TAGAAGCCCATCCAAACCATCAACTCTGAGCTCAATTATCTCGGTTTTTGTAAAAGATGCCAAAAATGTGTCAACTGAAAAATTATTAAACATAAAATCACCCATATTTTATCAGTTGTCACATTTTCGACATCTGTCACATAAATTGAGATAATTGAGCTCAAAGTTGAGGGCTTGGACGGGCTTCTATTAGAGGAAATACGGTAGGTTAAAATTAACAGTTGACAACTTTTTCGTAAAAATTCCTCTGAATCAGATATACTCCTTGAAACGAACCAAGTGTCAAAACATTCAGAAATATCACTGAATTCAAAATGTTGATACTCTATAAAGATATATTTCATTTAAGTGAATTTTTACGAACAAAGTCGTCAACTGCAAAATAGAAGATTTATTTTTGTTCACTGGACATAAGTATTCTCAGATTCGTTCGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTTTGATTTTCTAACGAAAATAGACAAAGTAKGTCATTTTTGGTATTTTTAGTATTGATTGAATTTGAAATTTGTGAAGTATTTACAATTTTGTAAATTTTCTCACCTCGCGTAGCTTGTGGTTCACAATTCTATCATCAGCTTCCTCTTTTAGCAAAATTGTGCCATAGTGGATGTCACAATTCTTCGTTATTACGTTTTGATCCAGGTGCTGGTAGAATTTGGGAACCTCAATCACTCGATCCTGAAAATAATAATCGAAAGTTTGAATCTTTAAAAGTTTCTATGAAGTTATCACTTACTGGAACATTGCGAACCAATCTGTTTTTGAGACTGGTCAAGTTTCTGGAGAAGGTGTCGGTCTGTGTTTGCTGGAATAGTTAGTTCGTTAAAGAAATAAAAAAAATTATCATGTTACAACTCACGAGATTGGTTGAGATCTGTTGTCCAGTCCCAGCAGAAATTTCCCTCATCAATTCCTCGGCATCCAACTCTTCCTGCTCCATTATTGGCTGAGCTTCCTTCTGAATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAATATCACTGAATTCAAAATG</pcr_primer_p1>
		<pcr_primer_p2>CGAGGTGAGAAAATTTACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>AGAAATATCACTGAATTCAAAATGTTGATACTCTATAAAGATATATTTCATTTAAGTGAATTTTTACGAACAAAGTCGTCAACTGCAAAATAGAAGATTTATTTTTGTTCACTGGACATAAGTATTCTCAGATTCGTTCGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTTTGATTTTCTAACGAAAATAGACAAAGTAGGTCATTTTTGGTATTTTTAGTATTGATTGAATTTGAAATTTGTGAAGTATTTACAATTTTGTAAATTTTCTCACCTCG</canonical_amplicon>
		<polymorphic_amplicon>AGAAATATCACTGAATTCAAAATGTTGATACTCTATAAAGATATATTTCATTTAAGTGAATTTTTACGAACAAAGTCGTCAACTGCAAAATAGAAGATTTATTTTTGTTCACTGGACATAAGTATTCTCAGATTCGTTCGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTTTGATTTTCTAACGAAAATAGACAAAGTAKGTCATTTTTGGTATTTTTAGTATTGATTGAATTTGAAATTTGTGAAGTATTTACAATTTTGTAAATTTTCTCACCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28788</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>158518</contig_pos>
        <strand>+</strand>
        <context>TCACAATTCT[A/G]TCATCAGCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACAATTTTGTAAATTTTCTCACCTCGCGTAGCTTGTGGTTCACAATTCT</left_flank>
        <right_flank>TCATCAGCTTCCTCTTTTAGCAAAATTGTGCCATAGTGGATGTCACAATT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATATTTTATCAGTTGTCACATTTTCGACATCTGTCACATAAATTGAGATAATTGAGCTCAAAGTTGAGGGCTTGGACGGGCTTCTATTAGAGGAAATACGGTAGGTTAAAATTAACAGTTGACAACTTTTTCGTAAAAATTCCTCTGAATCAGATATACTCCTTGAAACGAACCAAGTGTCAAAACATTCAGAAATATCACTGAATTCAAAATGTTGATACTCTATAAAGATATATTTCATTTAAGTGAATTTTTACGAACAAAGTCGTCAACTGCAAAATAGAAGATTTATTTTTGTTCACTGGACATAAGTATTCTCAGATTCGTTCGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTTTGATTTTCTAACGAAAATAGACAAAGTAGGTCATTTTTGGTATTTTTAGTATTGATTGAATTTGAAATTTGTGAAGTATTTACAATTTTGTAAATTTTCTCACCTCGCGTAGCTTGTGGTTCACAATTCTATCATCAGCTTCCTCTTTTAGCAAAATTGTGCCATAGTGGATGTCACAATTCTTCGTTATTACGTTTTGATCCAGGTGCTGGTAGAATTTGGGAACCTCAATCACTCGATCCTGAAAATAATAATCGAAAGTTTGAATCTTTAAAAGTTTCTATGAAGTTATCACTTACTGGAACATTGCGAACCAATCTGTTTTTGAGACTGGTCAAGTTTCTGGAGAAGGTGTCGGTCTGTGTTTGCTGGAATAGTTAGTTCGTTAAAGAAATAAAAAAAATTATCATGTTACAACTCACGAGATTGGTTGAGATCTGTTGTCCAGTCCCAGCAGAAATTTCCCTCATCAATTCCTCGGCATCCAACTCTTCCTGCTCCATTATTGGCTGAGCTTCCTTCTGAATCAACAGGTTGATTTCCAAAATCTGACTGTCGACGCCATCCGGAACCTCTTCCTAAAAAGCATTATATTTGGAAAATTGATTGAAACGCTTACCATATATAACGG</canonical>
            <polymorphic>CATATTTTATCAGTTGTCACATTTTCGACATCTGTCACATAAATTGAGATAATTGAGCTCAAAGTTGAGGGCTTGGACGGGCTTCTATTAGAGGAAATACGGTAGGTTAAAATTAACAGTTGACAACTTTTTCGTAAAAATTCCTCTGAATCAGATATACTCCTTGAAACGAACCAAGTGTCAAAACATTCAGAAATATCACTGAATTCAAAATGTTGATACTCTATAAAGATATATTTCATTTAAGTGAATTTTTACGAACAAAGTCGTCAACTGCAAAATAGAAGATTTATTTTTGTTCACTGGACATAAGTATTCTCAGATTCGTTCGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTTTGATTTTCTAACGAAAATAGACAAAGTAGGTCATTTTTGGTATTTTTAGTATTGATTGAATTTGAAATTTGTGAAGTATTTACAATTTTGTAAATTTTCTCACCTCGCGTAGCTTGTGGTTCACAATTCTRTCATCAGCTTCCTCTTTTAGCAAAATTGTGCCATAGTGGATGTCACAATTCTTCGTTATTACGTTTTGATCCAGGTGCTGGTAGAATTTGGGAACCTCAATCACTCGATCCTGAAAATAATAATCGAAAGTTTGAATCTTTAAAAGTTTCTATGAAGTTATCACTTACTGGAACATTGCGAACCAATCTGTTTTTGAGACTGGTCAAGTTTCTGGAGAAGGTGTCGGTCTGTGTTTGCTGGAATAGTTAGTTCGTTAAAGAAATAAAAAAAATTATCATGTTACAACTCACGAGATTGGTTGAGATCTGTTGTCCAGTCCCAGCAGAAATTTCCCTCATCAATTCCTCGGCATCCAACTCTTCCTGCTCCATTATTGGCTGAGCTTCCTTCTGAATCAACAGGTTGATTTCCAAAATCTGACTGTCGACGCCATCCGGAACCTCTTCCTAAAAAGCATTATATTTGGAAAATTGATTGAAACGCTTACCATATATAACGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCATTTTTGGTATTTTTAGTATTGA</pcr_primer_p1>
		<pcr_primer_p2>TCAAACTTTCGATTATTATTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GTCATTTTTGGTATTTTTAGTATTGATTGAATTTGAAATTTGTGAAGTATTTACAATTTTGTAAATTTTCTCACCTCGCGTAGCTTGTGGTTCACAATTCTATCATCAGCTTCCTCTTTTAGCAAAATTGTGCCATAGTGGATGTCACAATTCTTCGTTATTACGTTTTGATCCAGGTGCTGGTAGAATTTGGGAACCTCAATCACTCGATCCTGAAAATAATAATCGAAAGTTTGA</canonical_amplicon>
		<polymorphic_amplicon>GTCATTTTTGGTATTTTTAGTATTGATTGAATTTGAAATTTGTGAAGTATTTACAATTTTGTAAATTTTCTCACCTCGCGTAGCTTGTGGTTCACAATTCTRTCATCAGCTTCCTCTTTTAGCAAAATTGTGCCATAGTGGATGTCACAATTCTTCGTTATTACGTTTTGATCCAGGTGCTGGTAGAATTTGGGAACCTCAATCACTCGATCCTGAAAATAATAATCGAAAGTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28789</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>158530</contig_pos>
        <strand>+</strand>
        <context>CATCAGCTTC[C/T]TCTTTTAGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTTCTCACCTCGCGTAGCTTGTGGTTCACAATTCTATCATCAGCTTC</left_flank>
        <right_flank>TCTTTTAGCAAAATTGTGCCATAGTGGATGTCACAATTCTTCGTTATTAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGTCACATTTTCGACATCTGTCACATAAATTGAGATAATTGAGCTCAAAGTTGAGGGCTTGGACGGGCTTCTATTAGAGGAAATACGGTAGGTTAAAATTAACAGTTGACAACTTTTTCGTAAAAATTCCTCTGAATCAGATATACTCCTTGAAACGAACCAAGTGTCAAAACATTCAGAAATATCACTGAATTCAAAATGTTGATACTCTATAAAGATATATTTCATTTAAGTGAATTTTTACGAACAAAGTCGTCAACTGCAAAATAGAAGATTTATTTTTGTTCACTGGACATAAGTATTCTCAGATTCGTTCGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTTTGATTTTCTAACGAAAATAGACAAAGTAGGTCATTTTTGGTATTTTTAGTATTGATTGAATTTGAAATTTGTGAAGTATTTACAATTTTGTAAATTTTCTCACCTCGCGTAGCTTGTGGTTCACAATTCTATCATCAGCTTCCTCTTTTAGCAAAATTGTGCCATAGTGGATGTCACAATTCTTCGTTATTACGTTTTGATCCAGGTGCTGGTAGAATTTGGGAACCTCAATCACTCGATCCTGAAAATAATAATCGAAAGTTTGAATCTTTAAAAGTTTCTATGAAGTTATCACTTACTGGAACATTGCGAACCAATCTGTTTTTGAGACTGGTCAAGTTTCTGGAGAAGGTGTCGGTCTGTGTTTGCTGGAATAGTTAGTTCGTTAAAGAAATAAAAAAAATTATCATGTTACAACTCACGAGATTGGTTGAGATCTGTTGTCCAGTCCCAGCAGAAATTTCCCTCATCAATTCCTCGGCATCCAACTCTTCCTGCTCCATTATTGGCTGAGCTTCCTTCTGAATCAACAGGTTGATTTCCAAAATCTGACTGTCGACGCCATCCGGAACCTCTTCCTAAAAAGCATTATATTTGGAAAATTGATTGAAACGCTTACCATATATAACGGATTGTATTCCAA</canonical>
            <polymorphic>GTTGTCACATTTTCGACATCTGTCACATAAATTGAGATAATTGAGCTCAAAGTTGAGGGCTTGGACGGGCTTCTATTAGAGGAAATACGGTAGGTTAAAATTAACAGTTGACAACTTTTTCGTAAAAATTCCTCTGAATCAGATATACTCCTTGAAACGAACCAAGTGTCAAAACATTCAGAAATATCACTGAATTCAAAATGTTGATACTCTATAAAGATATATTTCATTTAAGTGAATTTTTACGAACAAAGTCGTCAACTGCAAAATAGAAGATTTATTTTTGTTCACTGGACATAAGTATTCTCAGATTCGTTCGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTTTGATTTTCTAACGAAAATAGACAAAGTAGGTCATTTTTGGTATTTTTAGTATTGATTGAATTTGAAATTTGTGAAGTATTTACAATTTTGTAAATTTTCTCACCTCGCGTAGCTTGTGGTTCACAATTCTATCATCAGCTTCYTCTTTTAGCAAAATTGTGCCATAGTGGATGTCACAATTCTTCGTTATTACGTTTTGATCCAGGTGCTGGTAGAATTTGGGAACCTCAATCACTCGATCCTGAAAATAATAATCGAAAGTTTGAATCTTTAAAAGTTTCTATGAAGTTATCACTTACTGGAACATTGCGAACCAATCTGTTTTTGAGACTGGTCAAGTTTCTGGAGAAGGTGTCGGTCTGTGTTTGCTGGAATAGTTAGTTCGTTAAAGAAATAAAAAAAATTATCATGTTACAACTCACGAGATTGGTTGAGATCTGTTGTCCAGTCCCAGCAGAAATTTCCCTCATCAATTCCTCGGCATCCAACTCTTCCTGCTCCATTATTGGCTGAGCTTCCTTCTGAATCAACAGGTTGATTTCCAAAATCTGACTGTCGACGCCATCCGGAACCTCTTCCTAAAAAGCATTATATTTGGAAAATTGATTGAAACGCTTACCATATATAACGGATTGTATTCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTTTGTAAATTTTCTCACCT</pcr_primer_p1>
		<pcr_primer_p2>AGTCTCAAAAACAGATTGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAATTTTGTAAATTTTCTCACCTCGCGTAGCTTGTGGTTCACAATTCTATCATCAGCTTCCTCTTTTAGCAAAATTGTGCCATAGTGGATGTCACAATTCTTCGTTATTACGTTTTGATCCAGGTGCTGGTAGAATTTGGGAACCTCAATCACTCGATCCTGAAAATAATAATCGAAAGTTTGAATCTTTAAAAGTTTCTATGAAGTTATCACTTACTGGAACATTGCGAACCAATCTGTTTTTGAGACT</canonical_amplicon>
		<polymorphic_amplicon>CAATTTTGTAAATTTTCTCACCTCGCGTAGCTTGTGGTTCACAATTCTATCATCAGCTTCYTCTTTTAGCAAAATTGTGCCATAGTGGATGTCACAATTCTTCGTTATTACGTTTTGATCCAGGTGCTGGTAGAATTTGGGAACCTCAATCACTCGATCCTGAAAATAATAATCGAAAGTTTGAATCTTTAAAAGTTTCTATGAAGTTATCACTTACTGGAACATTGCGAACCAATCTGTTTTTGAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28790</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>158569</contig_pos>
        <strand>+</strand>
        <context>TGTCACAATT[C/T]TTCGTTATTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATCAGCTTCCTCTTTTAGCAAAATTGTGCCATAGTGGATGTCACAATT</left_flank>
        <right_flank>TTCGTTATTACGTTTTGATCCAGGTGCTGGTAGAATTTGGGAACCTCAAT</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGAGCTCAAAGTTGAGGGCTTGGACGGGCTTCTATTAGAGGAAATACGGTAGGTTAAAATTAACAGTTGACAACTTTTTCGTAAAAATTCCTCTGAATCAGATATACTCCTTGAAACGAACCAAGTGTCAAAACATTCAGAAATATCACTGAATTCAAAATGTTGATACTCTATAAAGATATATTTCATTTAAGTGAATTTTTACGAACAAAGTCGTCAACTGCAAAATAGAAGATTTATTTTTGTTCACTGGACATAAGTATTCTCAGATTCGTTCGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTTTGATTTTCTAACGAAAATAGACAAAGTAGGTCATTTTTGGTATTTTTAGTATTGATTGAATTTGAAATTTGTGAAGTATTTACAATTTTGTAAATTTTCTCACCTCGCGTAGCTTGTGGTTCACAATTCTATCATCAGCTTCCTCTTTTAGCAAAATTGTGCCATAGTGGATGTCACAATTCTTCGTTATTACGTTTTGATCCAGGTGCTGGTAGAATTTGGGAACCTCAATCACTCGATCCTGAAAATAATAATCGAAAGTTTGAATCTTTAAAAGTTTCTATGAAGTTATCACTTACTGGAACATTGCGAACCAATCTGTTTTTGAGACTGGTCAAGTTTCTGGAGAAGGTGTCGGTCTGTGTTTGCTGGAATAGTTAGTTCGTTAAAGAAATAAAAAAAATTATCATGTTACAACTCACGAGATTGGTTGAGATCTGTTGTCCAGTCCCAGCAGAAATTTCCCTCATCAATTCCTCGGCATCCAACTCTTCCTGCTCCATTATTGGCTGAGCTTCCTTCTGAATCAACAGGTTGATTTCCAAAATCTGACTGTCGACGCCATCCGGAACCTCTTCCTAAAAAGCATTATATTTGGAAAATTGATTGAAACGCTTACCATATATAACGGATTGTATTCCAACCGCTCCCAAGAGTTATGTGGAATGCAGATGTACTCATC</canonical>
            <polymorphic>ATTGAGCTCAAAGTTGAGGGCTTGGACGGGCTTCTATTAGAGGAAATACGGTAGGTTAAAATTAACAGTTGACAACTTTTTCGTAAAAATTCCTCTGAATCAGATATACTCCTTGAAACGAACCAAGTGTCAAAACATTCAGAAATATCACTGAATTCAAAATGTTGATACTCTATAAAGATATATTTCATTTAAGTGAATTTTTACGAACAAAGTCGTCAACTGCAAAATAGAAGATTTATTTTTGTTCACTGGACATAAGTATTCTCAGATTCGTTCGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTTTGATTTTCTAACGAAAATAGACAAAGTAGGTCATTTTTGGTATTTTTAGTATTGATTGAATTTGAAATTTGTGAAGTATTTACAATTTTGTAAATTTTCTCACCTCGCGTAGCTTGTGGTTCACAATTCTATCATCAGCTTCCTCTTTTAGCAAAATTGTGCCATAGTGGATGTCACAATTYTTCGTTATTACGTTTTGATCCAGGTGCTGGTAGAATTTGGGAACCTCAATCACTCGATCCTGAAAATAATAATCGAAAGTTTGAATCTTTAAAAGTTTCTATGAAGTTATCACTTACTGGAACATTGCGAACCAATCTGTTTTTGAGACTGGTCAAGTTTCTGGAGAAGGTGTCGGTCTGTGTTTGCTGGAATAGTTAGTTCGTTAAAGAAATAAAAAAAATTATCATGTTACAACTCACGAGATTGGTTGAGATCTGTTGTCCAGTCCCAGCAGAAATTTCCCTCATCAATTCCTCGGCATCCAACTCTTCCTGCTCCATTATTGGCTGAGCTTCCTTCTGAATCAACAGGTTGATTTCCAAAATCTGACTGTCGACGCCATCCGGAACCTCTTCCTAAAAAGCATTATATTTGGAAAATTGATTGAAACGCTTACCATATATAACGGATTGTATTCCAACCGCTCCCAAGAGTTATGTGGAATGCAGATGTACTCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTTTGTAAATTTTCTCACCT</pcr_primer_p1>
		<pcr_primer_p2>AGTCTCAAAAACAGATTGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAATTTTGTAAATTTTCTCACCTCGCGTAGCTTGTGGTTCACAATTCTATCATCAGCTTCCTCTTTTAGCAAAATTGTGCCATAGTGGATGTCACAATTCTTCGTTATTACGTTTTGATCCAGGTGCTGGTAGAATTTGGGAACCTCAATCACTCGATCCTGAAAATAATAATCGAAAGTTTGAATCTTTAAAAGTTTCTATGAAGTTATCACTTACTGGAACATTGCGAACCAATCTGTTTTTGAGACT</canonical_amplicon>
		<polymorphic_amplicon>CAATTTTGTAAATTTTCTCACCTCGCGTAGCTTGTGGTTCACAATTCTATCATCAGCTTCCTCTTTTAGCAAAATTGTGCCATAGTGGATGTCACAATTYTTCGTTATTACGTTTTGATCCAGGTGCTGGTAGAATTTGGGAACCTCAATCACTCGATCCTGAAAATAATAATCGAAAGTTTGAATCTTTAAAAGTTTCTATGAAGTTATCACTTACTGGAACATTGCGAACCAATCTGTTTTTGAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28791</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>158672</contig_pos>
        <strand>+</strand>
        <context>AAGTTTCTAT[A/G]AAGTTATCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCGATCCTGAAAATAATAATCGAAAGTTTGAATCTTTAAAAGTTTCTAT</left_flank>
        <right_flank>AAGTTATCACTTACTGGAACATTGCGAACCAATCTGTTTTTGAGACTGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATACTCCTTGAAACGAACCAAGTGTCAAAACATTCAGAAATATCACTGAATTCAAAATGTTGATACTCTATAAAGATATATTTCATTTAAGTGAATTTTTACGAACAAAGTCGTCAACTGCAAAATAGAAGATTTATTTTTGTTCACTGGACATAAGTATTCTCAGATTCGTTCGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTTTGATTTTCTAACGAAAATAGACAAAGTAGGTCATTTTTGGTATTTTTAGTATTGATTGAATTTGAAATTTGTGAAGTATTTACAATTTTGTAAATTTTCTCACCTCGCGTAGCTTGTGGTTCACAATTCTATCATCAGCTTCCTCTTTTAGCAAAATTGTGCCATAGTGGATGTCACAATTCTTCGTTATTACGTTTTGATCCAGGTGCTGGTAGAATTTGGGAACCTCAATCACTCGATCCTGAAAATAATAATCGAAAGTTTGAATCTTTAAAAGTTTCTATGAAGTTATCACTTACTGGAACATTGCGAACCAATCTGTTTTTGAGACTGGTCAAGTTTCTGGAGAAGGTGTCGGTCTGTGTTTGCTGGAATAGTTAGTTCGTTAAAGAAATAAAAAAAATTATCATGTTACAACTCACGAGATTGGTTGAGATCTGTTGTCCAGTCCCAGCAGAAATTTCCCTCATCAATTCCTCGGCATCCAACTCTTCCTGCTCCATTATTGGCTGAGCTTCCTTCTGAATCAACAGGTTGATTTCCAAAATCTGACTGTCGACGCCATCCGGAACCTCTTCCTAAAAAGCATTATATTTGGAAAATTGATTGAAACGCTTACCATATATAACGGATTGTATTCCAACCGCTCCCAAGAGTTATGTGGAATGCAGATGTACTCATCGTGAGTTTTTTGGAACTCTTCTTCAGTGGAAAACTCGAAGACGTGATATTCCAAATTCATTGGTTCTGAAAAAAACAGACATTTTTTACCTTTCAAATTCAGG</canonical>
            <polymorphic>ATATACTCCTTGAAACGAACCAAGTGTCAAAACATTCAGAAATATCACTGAATTCAAAATGTTGATACTCTATAAAGATATATTTCATTTAAGTGAATTTTTACGAACAAAGTCGTCAACTGCAAAATAGAAGATTTATTTTTGTTCACTGGACATAAGTATTCTCAGATTCGTTCGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTTTGATTTTCTAACGAAAATAGACAAAGTAGGTCATTTTTGGTATTTTTAGTATTGATTGAATTTGAAATTTGTGAAGTATTTACAATTTTGTAAATTTTCTCACCTCGCGTAGCTTGTGGTTCACAATTCTATCATCAGCTTCCTCTTTTAGCAAAATTGTGCCATAGTGGATGTCACAATTCTTCGTTATTACGTTTTGATCCAGGTGCTGGTAGAATTTGGGAACCTCAATCACTCGATCCTGAAAATAATAATCGAAAGTTTGAATCTTTAAAAGTTTCTATRAAGTTATCACTTACTGGAACATTGCGAACCAATCTGTTTTTGAGACTGGTCAAGTTTCTGGAGAAGGTGTCGGTCTGTGTTTGCTGGAATAGTTAGTTCGTTAAAGAAATAAAAAAAATTATCATGTTACAACTCACGAGATTGGTTGAGATCTGTTGTCCAGTCCCAGCAGAAATTTCCCTCATCAATTCCTCGGCATCCAACTCTTCCTGCTCCATTATTGGCTGAGCTTCCTTCTGAATCAACAGGTTGATTTCCAAAATCTGACTGTCGACGCCATCCGGAACCTCTTCCTAAAAAGCATTATATTTGGAAAATTGATTGAAACGCTTACCATATATAACGGATTGTATTCCAACCGCTCCCAAGAGTTATGTGGAATGCAGATGTACTCATCGTGAGTTTTTTGGAACTCTTCTTCAGTGGAAAACTCGAAGACGTGATATTCCAAATTCATTGGTTCTGAAAAAAACAGACATTTTTTACCTTTCAAATTCAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCACTCGATCCTGAAAATAAT</pcr_primer_p1>
		<pcr_primer_p2>GAGGAATTGATGAGGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCACTCGATCCTGAAAATAATAATCGAAAGTTTGAATCTTTAAAAGTTTCTATGAAGTTATCACTTACTGGAACATTGCGAACCAATCTGTTTTTGAGACTGGTCAAGTTTCTGGAGAAGGTGTCGGTCTGTGTTTGCTGGAATAGTTAGTTCGTTAAAGAAATAAAAAAAATTATCATGTTACAACTCACGAGATTGGTTGAGATCTGTTGTCCAGTCCCAGCAGAAATTTCCCTCATCAATTCCTC</canonical_amplicon>
		<polymorphic_amplicon>AATCACTCGATCCTGAAAATAATAATCGAAAGTTTGAATCTTTAAAAGTTTCTATRAAGTTATCACTTACTGGAACATTGCGAACCAATCTGTTTTTGAGACTGGTCAAGTTTCTGGAGAAGGTGTCGGTCTGTGTTTGCTGGAATAGTTAGTTCGTTAAAGAAATAAAAAAAATTATCATGTTACAACTCACGAGATTGGTTGAGATCTGTTGTCCAGTCCCAGCAGAAATTTCCCTCATCAATTCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28792</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>158771</contig_pos>
        <strand>+</strand>
        <context>ATAGTTAGTT[A/C]GTTAAAGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTCAAGTTTCTGGAGAAGGTGTCGGTCTGTGTTTGCTGGAATAGTTAGTT</left_flank>
        <right_flank>GTTAAAGAAATAAAAAAAATTATCATGTTACAACTCACGAGATTGGTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTACGAACAAAGTCGTCAACTGCAAAATAGAAGATTTATTTTTGTTCACTGGACATAAGTATTCTCAGATTCGTTCGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTTTGATTTTCTAACGAAAATAGACAAAGTAGGTCATTTTTGGTATTTTTAGTATTGATTGAATTTGAAATTTGTGAAGTATTTACAATTTTGTAAATTTTCTCACCTCGCGTAGCTTGTGGTTCACAATTCTATCATCAGCTTCCTCTTTTAGCAAAATTGTGCCATAGTGGATGTCACAATTCTTCGTTATTACGTTTTGATCCAGGTGCTGGTAGAATTTGGGAACCTCAATCACTCGATCCTGAAAATAATAATCGAAAGTTTGAATCTTTAAAAGTTTCTATGAAGTTATCACTTACTGGAACATTGCGAACCAATCTGTTTTTGAGACTGGTCAAGTTTCTGGAGAAGGTGTCGGTCTGTGTTTGCTGGAATAGTTAGTTCGTTAAAGAAATAAAAAAAATTATCATGTTACAACTCACGAGATTGGTTGAGATCTGTTGTCCAGTCCCAGCAGAAATTTCCCTCATCAATTCCTCGGCATCCAACTCTTCCTGCTCCATTATTGGCTGAGCTTCCTTCTGAATCAACAGGTTGATTTCCAAAATCTGACTGTCGACGCCATCCGGAACCTCTTCCTAAAAAGCATTATATTTGGAAAATTGATTGAAACGCTTACCATATATAACGGATTGTATTCCAACCGCTCCCAAGAGTTATGTGGAATGCAGATGTACTCATCGTGAGTTTTTTGGAACTCTTCTTCAGTGGAAAACTCGAAGACGTGATATTCCAAATTCATTGGTTCTGAAAAAAACAGACATTTTTTACCTTTCAAATTCAGGAGGTTAGTTGGAGAAAGTCTTGAAGAACGGTACTTTAATGTTTATACTGGTTAAAAAATAAGAGCTGTAAAGAAATTTCTTTTGAGTTTCCCACAACAA</canonical>
            <polymorphic>TTTACGAACAAAGTCGTCAACTGCAAAATAGAAGATTTATTTTTGTTCACTGGACATAAGTATTCTCAGATTCGTTCGACAAAAGTTAATATTTATTTTTAGACATTCAACATTTTTGATTTTCTAACGAAAATAGACAAAGTAGGTCATTTTTGGTATTTTTAGTATTGATTGAATTTGAAATTTGTGAAGTATTTACAATTTTGTAAATTTTCTCACCTCGCGTAGCTTGTGGTTCACAATTCTATCATCAGCTTCCTCTTTTAGCAAAATTGTGCCATAGTGGATGTCACAATTCTTCGTTATTACGTTTTGATCCAGGTGCTGGTAGAATTTGGGAACCTCAATCACTCGATCCTGAAAATAATAATCGAAAGTTTGAATCTTTAAAAGTTTCTATGAAGTTATCACTTACTGGAACATTGCGAACCAATCTGTTTTTGAGACTGGTCAAGTTTCTGGAGAAGGTGTCGGTCTGTGTTTGCTGGAATAGTTAGTTMGTTAAAGAAATAAAAAAAATTATCATGTTACAACTCACGAGATTGGTTGAGATCTGTTGTCCAGTCCCAGCAGAAATTTCCCTCATCAATTCCTCGGCATCCAACTCTTCCTGCTCCATTATTGGCTGAGCTTCCTTCTGAATCAACAGGTTGATTTCCAAAATCTGACTGTCGACGCCATCCGGAACCTCTTCCTAAAAAGCATTATATTTGGAAAATTGATTGAAACGCTTACCATATATAACGGATTGTATTCCAACCGCTCCCAAGAGTTATGTGGAATGCAGATGTACTCATCGTGAGTTTTTTGGAACTCTTCTTCAGTGGAAAACTCGAAGACGTGATATTCCAAATTCATTGGTTCTGAAAAAAACAGACATTTTTTACCTTTCAAATTCAGGAGGTTAGTTGGAGAAAGTCTTGAAGAACGGTACTTTAATGTTTATACTGGTTAAAAAATAAGAGCTGTAAAGAAATTTCTTTTGAGTTTCCCACAACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCACTCGATCCTGAAAATAAT</pcr_primer_p1>
		<pcr_primer_p2>GAGGAATTGATGAGGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCACTCGATCCTGAAAATAATAATCGAAAGTTTGAATCTTTAAAAGTTTCTATGAAGTTATCACTTACTGGAACATTGCGAACCAATCTGTTTTTGAGACTGGTCAAGTTTCTGGAGAAGGTGTCGGTCTGTGTTTGCTGGAATAGTTAGTTCGTTAAAGAAATAAAAAAAATTATCATGTTACAACTCACGAGATTGGTTGAGATCTGTTGTCCAGTCCCAGCAGAAATTTCCCTCATCAATTCCTC</canonical_amplicon>
		<polymorphic_amplicon>AATCACTCGATCCTGAAAATAATAATCGAAAGTTTGAATCTTTAAAAGTTTCTATGAAGTTATCACTTACTGGAACATTGCGAACCAATCTGTTTTTGAGACTGGTCAAGTTTCTGGAGAAGGTGTCGGTCTGTGTTTGCTGGAATAGTTAGTTMGTTAAAGAAATAAAAAAAATTATCATGTTACAACTCACGAGATTGGTTGAGATCTGTTGTCCAGTCCCAGCAGAAATTTCCCTCATCAATTCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28793</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>223660</contig_pos>
        <strand></strand>
        <context>acaggtgtct[T/C]tcagaaaccg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCT</left_flank>
        <right_flank>TCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAAAACACGAGAGAATAGAGAGCTCCAGGGTCTGATTGGGGAAATATAATCAGTGGGAGGAATCGAATTCAGCTGGTTTCTCAAGAAGTGGTTATTAGTTGGGACAAGGAAGAATAATAAAAGTACGCATTTCTTTTAGGATTACGGTAGAACAATTAATCAAAATGAAATCGGGAAGCTGAGATTACTGTAGATCGGCGTTCTAACTATTTTTTTATTCTGGAAGGTCCACGAAACACAGTCCCGGTTAATAAGATATTCAAAACATATTTTTTTGTTGGCTTCCGGCTATTTTTACTATTTTCAGGGTTCCGAAACTTGGCTGTCAAGTTTCCAATCACTTTGAAAATTTTCGAGGGTCTGAAACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAATTTTCAAAACGTGAATTTTCATATTTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTTCGTATT</canonical>
            <polymorphic>ATCAAAACACGAGAGAATAGAGAGCTCCAGGGTCTGATTGGGGAAATATAATCAGTGGGAGGAATCGAATTCAGCTGGTTTCTCAAGAAGTGGTTATTAGTTGGGACAAGGAAGAATAATAAAAGTACGCATTTCTTTTAGGATTACGGTAGAACAATTAATCAAAATGAAATCGGGAAGCTGAGATTACTGTAGATCGGCGTTCTAACTATTTTTTTATTCTGGAAGGTCCACGAAACACAGTCCCGGTTAATAAGATATTCAAAACATATTTTTTTGTTGGCTTCCGGCTATTTTTACTATTTTCAGGGTTCCGAAACTTGGCTGTCAAGTTTCCAATCACTTTGAAAATTTTCGAGGGTCTGAAACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTYTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAATTTTCAAAACGTGAATTTTCATATTTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTTCGTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTATTCTGGAAGGTCCAC</pcr_primer_p1>
		<pcr_primer_p2>ACATCTGCTCTGTTCCTCAG</pcr_primer_p2>
		<pcr_amplicon_size>500</pcr_amplicon_size>
		<canonical_amplicon>TTTTTATTCTGGAAGGTCCACGAAACACAGTCCCGGTTAATAAGATATTCAAAACATATTTTTTTGTTGGCTTCCGGCTATTTTTACTATTTTCAGGGTTCCGAAACTTGGCTGTCAAGTTTCCAATCACTTTGAAAATTTTCGAGGGTCTGAAACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTATTCTGGAAGGTCCACGAAACACAGTCCCGGTTAATAAGATATTCAAAACATATTTTTTTGTTGGCTTCCGGCTATTTTTACTATTTTCAGGGTTCCGAAACTTGGCTGTCAAGTTTCCAATCACTTTGAAAATTTTCGAGGGTCTGAAACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTYTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28794</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>223696</contig_pos>
        <strand></strand>
        <context>actagggatt[T/C]ttgaataatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATT</left_flank>
        <right_flank>TTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGGGGAAATATAATCAGTGGGAGGAATCGAATTCAGCTGGTTTCTCAAGAAGTGGTTATTAGTTGGGACAAGGAAGAATAATAAAAGTACGCATTTCTTTTAGGATTACGGTAGAACAATTAATCAAAATGAAATCGGGAAGCTGAGATTACTGTAGATCGGCGTTCTAACTATTTTTTTATTCTGGAAGGTCCACGAAACACAGTCCCGGTTAATAAGATATTCAAAACATATTTTTTTGTTGGCTTCCGGCTATTTTTACTATTTTCAGGGTTCCGAAACTTGGCTGTCAAGTTTCCAATCACTTTGAAAATTTTCGAGGGTCTGAAACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAATTTTCAAAACGTGAATTTTCATATTTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTTCGTATTTTGAGGAACAAATGATAAGCATCTACTGATCAAAAA</canonical>
            <polymorphic>ATTGGGGAAATATAATCAGTGGGAGGAATCGAATTCAGCTGGTTTCTCAAGAAGTGGTTATTAGTTGGGACAAGGAAGAATAATAAAAGTACGCATTTCTTTTAGGATTACGGTAGAACAATTAATCAAAATGAAATCGGGAAGCTGAGATTACTGTAGATCGGCGTTCTAACTATTTTTTTATTCTGGAAGGTCCACGAAACACAGTCCCGGTTAATAAGATATTCAAAACATATTTTTTTGTTGGCTTCCGGCTATTTTTACTATTTTCAGGGTTCCGAAACTTGGCTGTCAAGTTTCCAATCACTTTGAAAATTTTCGAGGGTCTGAAACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTYTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAATTTTCAAAACGTGAATTTTCATATTTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTTCGTATTTTGAGGAACAAATGATAAGCATCTACTGATCAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTATTCTGGAAGGTCCAC</pcr_primer_p1>
		<pcr_primer_p2>ACATCTGCTCTGTTCCTCAG</pcr_primer_p2>
		<pcr_amplicon_size>500</pcr_amplicon_size>
		<canonical_amplicon>TTTTTATTCTGGAAGGTCCACGAAACACAGTCCCGGTTAATAAGATATTCAAAACATATTTTTTTGTTGGCTTCCGGCTATTTTTACTATTTTCAGGGTTCCGAAACTTGGCTGTCAAGTTTCCAATCACTTTGAAAATTTTCGAGGGTCTGAAACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTATTCTGGAAGGTCCACGAAACACAGTCCCGGTTAATAAGATATTCAAAACATATTTTTTTGTTGGCTTCCGGCTATTTTTACTATTTTCAGGGTTCCGAAACTTGGCTGTCAAGTTTCCAATCACTTTGAAAATTTTCGAGGGTCTGAAACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTYTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28795</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>223711</contig_pos>
        <strand></strand>
        <context>ataattctgt[G/A]aatgcaaagt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGT</left_flank>
        <right_flank>AATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGTGGGAGGAATCGAATTCAGCTGGTTTCTCAAGAAGTGGTTATTAGTTGGGACAAGGAAGAATAATAAAAGTACGCATTTCTTTTAGGATTACGGTAGAACAATTAATCAAAATGAAATCGGGAAGCTGAGATTACTGTAGATCGGCGTTCTAACTATTTTTTTATTCTGGAAGGTCCACGAAACACAGTCCCGGTTAATAAGATATTCAAAACATATTTTTTTGTTGGCTTCCGGCTATTTTTACTATTTTCAGGGTTCCGAAACTTGGCTGTCAAGTTTCCAATCACTTTGAAAATTTTCGAGGGTCTGAAACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAATTTTCAAAACGTGAATTTTCATATTTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTTCGTATTTTGAGGAACAAATGATAAGCATCTACTGATCAAAAATGAAACATCGTTTGT</canonical>
            <polymorphic>TCAGTGGGAGGAATCGAATTCAGCTGGTTTCTCAAGAAGTGGTTATTAGTTGGGACAAGGAAGAATAATAAAAGTACGCATTTCTTTTAGGATTACGGTAGAACAATTAATCAAAATGAAATCGGGAAGCTGAGATTACTGTAGATCGGCGTTCTAACTATTTTTTTATTCTGGAAGGTCCACGAAACACAGTCCCGGTTAATAAGATATTCAAAACATATTTTTTTGTTGGCTTCCGGCTATTTTTACTATTTTCAGGGTTCCGAAACTTGGCTGTCAAGTTTCCAATCACTTTGAAAATTTTCGAGGGTCTGAAACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTRAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAATTTTCAAAACGTGAATTTTCATATTTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTTCGTATTTTGAGGAACAAATGATAAGCATCTACTGATCAAAAATGAAACATCGTTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>141 122 116 102 94 65 60 60 55 54 53 35 17 7 7 6 6</canonical_bands>
                <polymorphic_bands>177 141 116 102 94 65 60 60 54 53 35 17 7 7 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTATTCTGGAAGGTCCAC</pcr_primer_p1>
		<pcr_primer_p2>ACATCTGCTCTGTTCCTCAG</pcr_primer_p2>
		<pcr_amplicon_size>500</pcr_amplicon_size>
		<canonical_amplicon>TTTTTATTCTGGAAGGTCCACGAAACACAGTCCCGGTTAATAAGATATTCAAAACATATTTTTTTGTTGGCTTCCGGCTATTTTTACTATTTTCAGGGTTCCGAAACTTGGCTGTCAAGTTTCCAATCACTTTGAAAATTTTCGAGGGTCTGAAACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTATTCTGGAAGGTCCACGAAACACAGTCCCGGTTAATAAGATATTCAAAACATATTTTTTTGTTGGCTTCCGGCTATTTTTACTATTTTCAGGGTTCCGAAACTTGGCTGTCAAGTTTCCAATCACTTTGAAAATTTTCGAGGGTCTGAAACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTRAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28796</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>223762</contig_pos>
        <strand></strand>
        <context>ccgagctcca[A/G]atctctaaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCA</left_flank>
        <right_flank>ATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGACAAGGAAGAATAATAAAAGTACGCATTTCTTTTAGGATTACGGTAGAACAATTAATCAAAATGAAATCGGGAAGCTGAGATTACTGTAGATCGGCGTTCTAACTATTTTTTTATTCTGGAAGGTCCACGAAACACAGTCCCGGTTAATAAGATATTCAAAACATATTTTTTTGTTGGCTTCCGGCTATTTTTACTATTTTCAGGGTTCCGAAACTTGGCTGTCAAGTTTCCAATCACTTTGAAAATTTTCGAGGGTCTGAAACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAATTTTCAAAACGTGAATTTTCATATTTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTTCGTATTTTGAGGAACAAATGATAAGCATCTACTGATCAAAAATGAAACATCGTTTGTTTGCCGTTGGTGGTGGTGACCAGCTGTCGAAAGTCATAATGTTCGCTTTTG</canonical>
            <polymorphic>GGGACAAGGAAGAATAATAAAAGTACGCATTTCTTTTAGGATTACGGTAGAACAATTAATCAAAATGAAATCGGGAAGCTGAGATTACTGTAGATCGGCGTTCTAACTATTTTTTTATTCTGGAAGGTCCACGAAACACAGTCCCGGTTAATAAGATATTCAAAACATATTTTTTTGTTGGCTTCCGGCTATTTTTACTATTTTCAGGGTTCCGAAACTTGGCTGTCAAGTTTCCAATCACTTTGAAAATTTTCGAGGGTCTGAAACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCARATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAATTTTCAAAACGTGAATTTTCATATTTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTTCGTATTTTGAGGAACAAATGATAAGCATCTACTGATCAAAAATGAAACATCGTTTGTTTGCCGTTGGTGGTGGTGACCAGCTGTCGAAAGTCATAATGTTCGCTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTATTCTGGAAGGTCCAC</pcr_primer_p1>
		<pcr_primer_p2>ACATCTGCTCTGTTCCTCAG</pcr_primer_p2>
		<pcr_amplicon_size>500</pcr_amplicon_size>
		<canonical_amplicon>TTTTTATTCTGGAAGGTCCACGAAACACAGTCCCGGTTAATAAGATATTCAAAACATATTTTTTTGTTGGCTTCCGGCTATTTTTACTATTTTCAGGGTTCCGAAACTTGGCTGTCAAGTTTCCAATCACTTTGAAAATTTTCGAGGGTCTGAAACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTATTCTGGAAGGTCCACGAAACACAGTCCCGGTTAATAAGATATTCAAAACATATTTTTTTGTTGGCTTCCGGCTATTTTTACTATTTTCAGGGTTCCGAAACTTGGCTGTCAAGTTTCCAATCACTTTGAAAATTTTCGAGGGTCTGAAACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCARATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28797</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>223823</contig_pos>
        <strand></strand>
        <context>cgaatatctt[G/T]ttgaccggca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTT</left_flank>
        <right_flank>TTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATGAAATCGGGAAGCTGAGATTACTGTAGATCGGCGTTCTAACTATTTTTTTATTCTGGAAGGTCCACGAAACACAGTCCCGGTTAATAAGATATTCAAAACATATTTTTTTGTTGGCTTCCGGCTATTTTTACTATTTTCAGGGTTCCGAAACTTGGCTGTCAAGTTTCCAATCACTTTGAAAATTTTCGAGGGTCTGAAACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAATTTTCAAAACGTGAATTTTCATATTTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTTCGTATTTTGAGGAACAAATGATAAGCATCTACTGATCAAAAATGAAACATCGTTTGTTTGCCGTTGGTGGTGGTGACCAGCTGTCGAAAGTCATAATGTTCGCTTTTGAGAAAAAAAACACGCAATTTAGTTAACCTTCATTGTTCCCAGAATACAAGCGTCTATAATT</canonical>
            <polymorphic>AAAATGAAATCGGGAAGCTGAGATTACTGTAGATCGGCGTTCTAACTATTTTTTTATTCTGGAAGGTCCACGAAACACAGTCCCGGTTAATAAGATATTCAAAACATATTTTTTTGTTGGCTTCCGGCTATTTTTACTATTTTCAGGGTTCCGAAACTTGGCTGTCAAGTTTCCAATCACTTTGAAAATTTTCGAGGGTCTGAAACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTKTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGTCAAATTTCCAACATTACGTGAAAATTTTCAAAACGTGAATTTTCATATTTCTCCCCGAATGGATTACTCTTCTCAGACGGATTTATTCTATTTGGTGTAATACCTAAAAACAATTCGTTTTTTGATCTACCGTAATCTCTACTGCCATTAACAATACTGCCAGTAATTGGTCTAAAAACGTATTCTAGAAATTTAGAAATTTTCTACAGAACACCTACGCTATCGGCCTTTTCCAGGAAAAAAAGTAAATTTGTCCATACGCCAAAAATAGGATGACACTTCGTATTTTGAGGAACAAATGATAAGCATCTACTGATCAAAAATGAAACATCGTTTGTTTGCCGTTGGTGGTGGTGACCAGCTGTCGAAAGTCATAATGTTCGCTTTTGAGAAAAAAAACACGCAATTTAGTTAACCTTCATTGTTCCCAGAATACAAGCGTCTATAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>502 461 37</canonical_bands>
                <polymorphic_bands>963 37</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>461 434 68 37</canonical_bands>
                <polymorphic_bands>895 68 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTATTCTGGAAGGTCCAC</pcr_primer_p1>
		<pcr_primer_p2>TGACATCTGCTCTGTTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>502</pcr_amplicon_size>
		<canonical_amplicon>TTTTTATTCTGGAAGGTCCACGAAACACAGTCCCGGTTAATAAGATATTCAAAACATATTTTTTTGTTGGCTTCCGGCTATTTTTACTATTTTCAGGGTTCCGAAACTTGGCTGTCAAGTTTCCAATCACTTTGAAAATTTTCGAGGGTCTGAAACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTGTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGTCA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTATTCTGGAAGGTCCACGAAACACAGTCCCGGTTAATAAGATATTCAAAACATATTTTTTTGTTGGCTTCCGGCTATTTTTACTATTTTCAGGGTTCCGAAACTTGGCTGTCAAGTTTCCAATCACTTTGAAAATTTTCGAGGGTCTGAAACAGATTTAGATCGAAACTTTAGAACTCACAAACTTTTTGAAAATTCCTAGCTTTTTAATTAATTGCCGATTTCTGAAAACAGCCTCGCTTTGGCCCGTTTTGGTACTGAAAACATTAGAACACAGGTGTCTTTCAGAAACCGGCAGATAGCTTAAAAACTAGGGATTTTTGAATAATTCTGTGAATGCAAAGTTTGAGCTTTAGGTCTGTTTCAACTTGACAGCCGAGCTCCAAATCTCTAAAAATGGTCAGAATAACCGAAAATCAACTGAAAATTATGTATTCGAATATCTTKTTGACCGGCACTAAGTGCATGTCTAAATTGCTGAGGAACAGAGCAGATGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28798</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>225788</contig_pos>
        <strand></strand>
        <context>gctcaaaaat[G/A]aaagttcaag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAAAATTTTTGATAGCTCTCGCAAAAATCGAGATAATTAAGCTCAAAAAT</left_flank>
        <right_flank>AAAGTTCAAGTGGGCTTCTATTATCGGAAATAAAATAAATCAACTTCGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAATATCAGCTGAATTGCACACGAGTTTCAAAAAATATGATGAATTATACATAAATATTCTCGTGAGTAGATAAAGTTTCAAATAAAAGTTGAAAACATATTTTTGAGTTTTGGCTTCATAATGTTTGCTTGTGAAGAAAAGGAGGTATAGCGTAATTTGTTTATTAGAAGCTTAGTGCTAAATTATGTCAATTTTTGTGAAATATATCAAAACTTTGTAAACGGATAAAAAATAGCTGATATTATGATAAATAATTCATAAGTTGACAAATTTTTGATGGCATTCACAGGAATCAAGATAATTGAGTCTAAAATTGACAGTTTGAGTGGATTACAATTTGAGCAATGAAAATTTTGAGCACAATTATCTCAATTCCTGTGAAAGATATCAAAAAATTGTCAATTAATAAATTATTGGTGATATCATGATAAATAATTTATCAGTGAGAAAATTTTTGATAGCTCTCGCAAAAATCGAGATAATTAAGCTCAAAAATGAAAGTTCAAGTGGGCTTCTATTATCGGAAATAAAATAAATCAACTTCGATTGAAATACCTCAAAAACGCAATATACCTTGAAAATGAAAATATTCAAAAAATAAAATTATTTTTGCTCAATAAATTAAAATACCTCAAAAACTCCAAAAAATTTGCAGACAACGAATAACCCAGAAATTAGTCAACCGTGCCCGAATCCCTTTTTTGTAGCAAATTTCCAAAAATTATGGATCTCAAAGACCACCTCTCTCCCAAAACCAGTCACCTATTCTGCAGAAATAATAGTATGGGGAATACCGACCAACCGAAATAGTCAATTTCTAGAACATCTTGTTTTTCAACACCTCAGTTGTCCTTCTGTTGACTTCTGACTCACGAAAACATAACTGACAACACCCATCTGTCAGGTTTTTTTCTTTTTTTGTCTGTATGGGTGGCAAACAGTTTGTTGAACTTTTGATTAGGTTTTTTAAAGACAAAATTAGATTATTACAAAAATA</canonical>
            <polymorphic>ATCAATATCAGCTGAATTGCACACGAGTTTCAAAAAATATGATGAATTATACATAAATATTCTCGTGAGTAGATAAAGTTTCAAATAAAAGTTGAAAACATATTTTTGAGTTTTGGCTTCATAATGTTTGCTTGTGAAGAAAAGGAGGTATAGCGTAATTTGTTTATTAGAAGCTTAGTGCTAAATTATGTCAATTTTTGTGAAATATATCAAAACTTTGTAAACGGATAAAAAATAGCTGATATTATGATAAATAATTCATAAGTTGACAAATTTTTGATGGCATTCACAGGAATCAAGATAATTGAGTCTAAAATTGACAGTTTGAGTGGATTACAATTTGAGCAATGAAAATTTTGAGCACAATTATCTCAATTCCTGTGAAAGATATCAAAAAATTGTCAATTAATAAATTATTGGTGATATCATGATAAATAATTTATCAGTGAGAAAATTTTTGATAGCTCTCGCAAAAATCGAGATAATTAAGCTCAAAAATRAAAGTTCAAGTGGGCTTCTATTATCGGAAATAAAATAAATCAACTTCGATTGAAATACCTCAAAAACGCAATATACCTTGAAAATGAAAATATTCAAAAAATAAAATTATTTTTGCTCAATAAATTAAAATACCTCAAAAACTCCAAAAAATTTGCAGACAACGAATAACCCAGAAATTAGTCAACCGTGCCCGAATCCCTTTTTTGTAGCAAATTTCCAAAAATTATGGATCTCAAAGACCACCTCTCTCCCAAAACCAGTCACCTATTCTGCAGAAATAATAGTATGGGGAATACCGACCAACCGAAATAGTCAATTTCTAGAACATCTTGTTTTTCAACACCTCAGTTGTCCTTCTGTTGACTTCTGACTCACGAAAACATAACTGACAACACCCATCTGTCAGGTTTTTTTCTTTTTTTGTCTGTATGGGTGGCAAACAGTTTGTTGAACTTTTGATTAGGTTTTTTAAAGACAAAATTAGATTATTACAAAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTACAATTTGAGCAATGA</pcr_primer_p1>
		<pcr_primer_p2>TATATTGCGTTTTTGAGGTATTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GGATTACAATTTGAGCAATGAAAATTTTGAGCACAATTATCTCAATTCCTGTGAAAGATATCAAAAAATTGTCAATTAATAAATTATTGGTGATATCATGATAAATAATTTATCAGTGAGAAAATTTTTGATAGCTCTCGCAAAAATCGAGATAATTAAGCTCAAAAATGAAAGTTCAAGTGGGCTTCTATTATCGGAAATAAAATAAATCAACTTCGATTGAAATACCTCAAAAACGCAATATA</canonical_amplicon>
		<polymorphic_amplicon>GGATTACAATTTGAGCAATGAAAATTTTGAGCACAATTATCTCAATTCCTGTGAAAGATATCAAAAAATTGTCAATTAATAAATTATTGGTGATATCATGATAAATAATTTATCAGTGAGAAAATTTTTGATAGCTCTCGCAAAAATCGAGATAATTAAGCTCAAAAATRAAAGTTCAAGTGGGCTTCTATTATCGGAAATAAAATAAATCAACTTCGATTGAAATACCTCAAAAACGCAATATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28799</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>298091</contig_pos>
        <strand>+</strand>
        <context>GATAGAATGT[A/G]TACATCGGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTACCAAAAGGCAGAATTCACTTCTAAATCGAAACGAGATAGAATGT</left_flank>
        <right_flank>TACATCGGAACAATTTCATCAATCTTCAGCAGTCTGGTTCTCCGGCTGAG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCCAAAATCCGTCGTTTTAAAATCATATTTTAAACAAAATCAGGAAACTGGAATGGCGCCGAAAATCTTCCAGAAGACTCTGAAAACTTGCGTTTTTTGGGAAATGTATGGGGGGGGGGGGGGGGGCGCATGGGAAAAATCCTAGAAATTATGCTCTGATACAGCTCGCGAGGAATTGAACTATTGGACCTAACGCTGGAGGACCTAACACCGCCCCGAAACTAGCTGAGCACACCTTCTCAGCGACTACGGTAGCGCAAGCTATGTGTCTGACCAATTTCAATTATGAAAAAGGCTCAAAACAGAAAGCTCCTTGCTCCCATCTTTTACTAAACGAAGACATCCAGAGTTTGAAGTATCATATTCAAGCTTTCCATGACAAATATAAGAAAGAAGTCAGTTGTTAAAGATTGGTACAAGCGGAGCAAGAGAAAAAATAGAAAATTGAAATTACCAAAAGGCAGAATTCACTTCTAAATCGAAACGAGATAGAATGTGTACATCGGAACAATTTCATCAATCTTCAGCAGTCTGGTTCTCCGGCTGAGCAATGCTTCTATATCTTGATTAAGAAGGCTGCAAGCGTTGTATTCCAAAAGATAGAAATATCTTACTGGTCTTATTCATTTTTTTTGCCGTGGCTTGCTTCTTCGAGTTCGTCCCGGCAGTGCTGGAGTACCTCATTTTTGAGCTTTTCTTTGAGAACGTTGAAAACTAAACGTCGCGCTTCTTTTTGCATGAAAGCGACCAAGCGCGCTTGCAAAGCAACAAAAAAAACACAAAGCAAAATACACGAAGGAATAGAGAGGCGGAAAAGAAATTTCTAAAAAACTGTTCGAAACCACGGGACACATACGCATACACATATTTTATGATTGATCAAAGAAAGGGAAGCGAGAGATAGAGTGCGAGCAGGAGGGATAAGAGAGTGCAGACGAGTCGCCGTCGTGTTTTGTTTCGAAGTTCATCTTATTGAAGTTCAGAGAAAGTGAAGACCG</canonical>
            <polymorphic>TTCCCAAAATCCGTCGTTTTAAAATCATATTTTAAACAAAATCAGGAAACTGGAATGGCGCCGAAAATCTTCCAGAAGACTCTGAAAACTTGCGTTTTTTGGGAAATGTATGGGGGGGGGGGGGGGGGCGCATGGGAAAAATCCTAGAAATTATGCTCTGATACAGCTCGCGAGGAATTGAACTATTGGACCTAACGCTGGAGGACCTAACACCGCCCCGAAACTAGCTGAGCACACCTTCTCAGCGACTACGGTAGCGCAAGCTATGTGTCTGACCAATTTCAATTATGAAAAAGGCTCAAAACAGAAAGCTCCTTGCTCCCATCTTTTACTAAACGAAGACATCCAGAGTTTGAAGTATCATATTCAAGCTTTCCATGACAAATATAAGAAAGAAGTCAGTTGTTAAAGATTGGTACAAGCGGAGCAAGAGAAAAAATAGAAAATTGAAATTACCAAAAGGCAGAATTCACTTCTAAATCGAAACGAGATAGAATGTRTACATCGGAACAATTTCATCAATCTTCAGCAGTCTGGTTCTCCGGCTGAGCAATGCTTCTATATCTTGATTAAGAAGGCTGCAAGCGTTGTATTCCAAAAGATAGAAATATCTTACTGGTCTTATTCATTTTTTTTGCCGTGGCTTGCTTCTTCGAGTTCGTCCCGGCAGTGCTGGAGTACCTCATTTTTGAGCTTTTCTTTGAGAACGTTGAAAACTAAACGTCGCGCTTCTTTTTGCATGAAAGCGACCAAGCGCGCTTGCAAAGCAACAAAAAAAACACAAAGCAAAATACACGAAGGAATAGAGAGGCGGAAAAGAAATTTCTAAAAAACTGTTCGAAACCACGGGACACATACGCATACACATATTTTATGATTGATCAAAGAAAGGGAAGCGAGAGATAGAGTGCGAGCAGGAGGGATAAGAGAGTGCAGACGAGTCGCCGTCGTGTTTTGTTTCGAAGTTCATCTTATTGAAGTTCAGAGAAAGTGAAGACCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGTACA</site>
                <isoschizomers>
                    <enzyme>AauI</enzyme>
                    <enzyme>Bsp1407I</enzyme>
                    <enzyme>BsrGI</enzyme>
                    <enzyme>SspBI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>417 321 178 84</canonical_bands>
                <polymorphic_bands>417 321 262</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>212 202 142 109 51 45 41 34 30 28 23 22 19 14 12 7 7 2</canonical_bands>
                <polymorphic_bands>212 202 170 109 51 45 41 34 30 23 22 19 14 12 7 7 2</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACTAAACGAAGACATCCAGAG</pcr_primer_p1>
		<pcr_primer_p2>CAAGATATAGAAGCATTGCTCAG</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TTACTAAACGAAGACATCCAGAGTTTGAAGTATCATATTCAAGCTTTCCATGACAAATATAAGAAAGAAGTCAGTTGTTAAAGATTGGTACAAGCGGAGCAAGAGAAAAAATAGAAAATTGAAATTACCAAAAGGCAGAATTCACTTCTAAATCGAAACGAGATAGAATGTGTACATCGGAACAATTTCATCAATCTTCAGCAGTCTGGTTCTCCGGCTGAGCAATGCTTCTATATCTTG</canonical_amplicon>
		<polymorphic_amplicon>TTACTAAACGAAGACATCCAGAGTTTGAAGTATCATATTCAAGCTTTCCATGACAAATATAAGAAAGAAGTCAGTTGTTAAAGATTGGTACAAGCGGAGCAAGAGAAAAAATAGAAAATTGAAATTACCAAAAGGCAGAATTCACTTCTAAATCGAAACGAGATAGAATGTRTACATCGGAACAATTTCATCAATCTTCAGCAGTCTGGTTCTCCGGCTGAGCAATGCTTCTATATCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28800</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>298134</contig_pos>
        <strand>+</strand>
        <context>TCTGGTTCTC[C/T]GGCTGAGCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAATGTGTACATCGGAACAATTTCATCAATCTTCAGCAGTCTGGTTCTC</left_flank>
        <right_flank>GGCTGAGCAATGCTTCTATATCTTGATTAAGAAGGCTGCAAGCGTTGTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAAACTGGAATGGCGCCGAAAATCTTCCAGAAGACTCTGAAAACTTGCGTTTTTTGGGAAATGTATGGGGGGGGGGGGGGGGGCGCATGGGAAAAATCCTAGAAATTATGCTCTGATACAGCTCGCGAGGAATTGAACTATTGGACCTAACGCTGGAGGACCTAACACCGCCCCGAAACTAGCTGAGCACACCTTCTCAGCGACTACGGTAGCGCAAGCTATGTGTCTGACCAATTTCAATTATGAAAAAGGCTCAAAACAGAAAGCTCCTTGCTCCCATCTTTTACTAAACGAAGACATCCAGAGTTTGAAGTATCATATTCAAGCTTTCCATGACAAATATAAGAAAGAAGTCAGTTGTTAAAGATTGGTACAAGCGGAGCAAGAGAAAAAATAGAAAATTGAAATTACCAAAAGGCAGAATTCACTTCTAAATCGAAACGAGATAGAATGTGTACATCGGAACAATTTCATCAATCTTCAGCAGTCTGGTTCTCCGGCTGAGCAATGCTTCTATATCTTGATTAAGAAGGCTGCAAGCGTTGTATTCCAAAAGATAGAAATATCTTACTGGTCTTATTCATTTTTTTTGCCGTGGCTTGCTTCTTCGAGTTCGTCCCGGCAGTGCTGGAGTACCTCATTTTTGAGCTTTTCTTTGAGAACGTTGAAAACTAAACGTCGCGCTTCTTTTTGCATGAAAGCGACCAAGCGCGCTTGCAAAGCAACAAAAAAAACACAAAGCAAAATACACGAAGGAATAGAGAGGCGGAAAAGAAATTTCTAAAAAACTGTTCGAAACCACGGGACACATACGCATACACATATTTTATGATTGATCAAAGAAAGGGAAGCGAGAGATAGAGTGCGAGCAGGAGGGATAAGAGAGTGCAGACGAGTCGCCGTCGTGTTTTGTTTCGAAGTTCATCTTATTGAAGTTCAGAGAAAGTGAAGACCGTGGAAGCGATAGAATCTTCAATATGTTTCTTGGTTCTGTAAAA</canonical>
            <polymorphic>AGGAAACTGGAATGGCGCCGAAAATCTTCCAGAAGACTCTGAAAACTTGCGTTTTTTGGGAAATGTATGGGGGGGGGGGGGGGGGCGCATGGGAAAAATCCTAGAAATTATGCTCTGATACAGCTCGCGAGGAATTGAACTATTGGACCTAACGCTGGAGGACCTAACACCGCCCCGAAACTAGCTGAGCACACCTTCTCAGCGACTACGGTAGCGCAAGCTATGTGTCTGACCAATTTCAATTATGAAAAAGGCTCAAAACAGAAAGCTCCTTGCTCCCATCTTTTACTAAACGAAGACATCCAGAGTTTGAAGTATCATATTCAAGCTTTCCATGACAAATATAAGAAAGAAGTCAGTTGTTAAAGATTGGTACAAGCGGAGCAAGAGAAAAAATAGAAAATTGAAATTACCAAAAGGCAGAATTCACTTCTAAATCGAAACGAGATAGAATGTGTACATCGGAACAATTTCATCAATCTTCAGCAGTCTGGTTCTCYGGCTGAGCAATGCTTCTATATCTTGATTAAGAAGGCTGCAAGCGTTGTATTCCAAAAGATAGAAATATCTTACTGGTCTTATTCATTTTTTTTGCCGTGGCTTGCTTCTTCGAGTTCGTCCCGGCAGTGCTGGAGTACCTCATTTTTGAGCTTTTCTTTGAGAACGTTGAAAACTAAACGTCGCGCTTCTTTTTGCATGAAAGCGACCAAGCGCGCTTGCAAAGCAACAAAAAAAACACAAAGCAAAATACACGAAGGAATAGAGAGGCGGAAAAGAAATTTCTAAAAAACTGTTCGAAACCACGGGACACATACGCATACACATATTTTATGATTGATCAAAGAAAGGGAAGCGAGAGATAGAGTGCGAGCAGGAGGGATAAGAGAGTGCAGACGAGTCGCCGTCGTGTTTTGTTTCGAAGTTCATCTTATTGAAGTTCAGAGAAAGTGAAGACCGTGGAAGCGATAGAATCTTCAATATGTTTCTTGGTTCTGTAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 379 122</canonical_bands>
                <polymorphic_bands>621 379</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACTTCTAAATCGAAACGAGATA</pcr_primer_p1>
		<pcr_primer_p2>TTAGTTTTCAACGTTCTCAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACTTCTAAATCGAAACGAGATAGAATGTGTACATCGGAACAATTTCATCAATCTTCAGCAGTCTGGTTCTCCGGCTGAGCAATGCTTCTATATCTTGATTAAGAAGGCTGCAAGCGTTGTATTCCAAAAGATAGAAATATCTTACTGGTCTTATTCATTTTTTTTGCCGTGGCTTGCTTCTTCGAGTTCGTCCCGGCAGTGCTGGAGTACCTCATTTTTGAGCTTTTCTTTGAGAACGTTGAAAACTAA</canonical_amplicon>
		<polymorphic_amplicon>CACTTCTAAATCGAAACGAGATAGAATGTGTACATCGGAACAATTTCATCAATCTTCAGCAGTCTGGTTCTCYGGCTGAGCAATGCTTCTATATCTTGATTAAGAAGGCTGCAAGCGTTGTATTCCAAAAGATAGAAATATCTTACTGGTCTTATTCATTTTTTTTGCCGTGGCTTGCTTCTTCGAGTTCGTCCCGGCAGTGCTGGAGTACCTCATTTTTGAGCTTTTCTTTGAGAACGTTGAAAACTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28801</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>298220</contig_pos>
        <strand>+</strand>
        <context>GTCTTATTCA[A/G]TTTTTTTGCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGCAAGCGTTGTATTCCAAAAGATAGAAATATCTTACTGGTCTTATTCA</left_flank>
        <right_flank>TTTTTTTGCCGTGGCTTGCTTCTTCGAGTTCGTCCCGGCAGTGCTGGAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATGGGAAAAATCCTAGAAATTATGCTCTGATACAGCTCGCGAGGAATTGAACTATTGGACCTAACGCTGGAGGACCTAACACCGCCCCGAAACTAGCTGAGCACACCTTCTCAGCGACTACGGTAGCGCAAGCTATGTGTCTGACCAATTTCAATTATGAAAAAGGCTCAAAACAGAAAGCTCCTTGCTCCCATCTTTTACTAAACGAAGACATCCAGAGTTTGAAGTATCATATTCAAGCTTTCCATGACAAATATAAGAAAGAAGTCAGTTGTTAAAGATTGGTACAAGCGGAGCAAGAGAAAAAATAGAAAATTGAAATTACCAAAAGGCAGAATTCACTTCTAAATCGAAACGAGATAGAATGTGTACATCGGAACAATTTCATCAATCTTCAGCAGTCTGGTTCTCCGGCTGAGCAATGCTTCTATATCTTGATTAAGAAGGCTGCAAGCGTTGTATTCCAAAAGATAGAAATATCTTACTGGTCTTATTCATTTTTTTTGCCGTGGCTTGCTTCTTCGAGTTCGTCCCGGCAGTGCTGGAGTACCTCATTTTTGAGCTTTTCTTTGAGAACGTTGAAAACTAAACGTCGCGCTTCTTTTTGCATGAAAGCGACCAAGCGCGCTTGCAAAGCAACAAAAAAAACACAAAGCAAAATACACGAAGGAATAGAGAGGCGGAAAAGAAATTTCTAAAAAACTGTTCGAAACCACGGGACACATACGCATACACATATTTTATGATTGATCAAAGAAAGGGAAGCGAGAGATAGAGTGCGAGCAGGAGGGATAAGAGAGTGCAGACGAGTCGCCGTCGTGTTTTGTTTCGAAGTTCATCTTATTGAAGTTCAGAGAAAGTGAAGACCGTGGAAGCGATAGAATCTTCAATATGTTTCTTGGTTCTGTAAAAAAATCCATTCGTTGACTATTCTTTATTCAATGGCATTTTCAAGGATCTGCAACTTTTTCAATTTTCTTTTCCCTGGTTTATCATTT</canonical>
            <polymorphic>GCATGGGAAAAATCCTAGAAATTATGCTCTGATACAGCTCGCGAGGAATTGAACTATTGGACCTAACGCTGGAGGACCTAACACCGCCCCGAAACTAGCTGAGCACACCTTCTCAGCGACTACGGTAGCGCAAGCTATGTGTCTGACCAATTTCAATTATGAAAAAGGCTCAAAACAGAAAGCTCCTTGCTCCCATCTTTTACTAAACGAAGACATCCAGAGTTTGAAGTATCATATTCAAGCTTTCCATGACAAATATAAGAAAGAAGTCAGTTGTTAAAGATTGGTACAAGCGGAGCAAGAGAAAAAATAGAAAATTGAAATTACCAAAAGGCAGAATTCACTTCTAAATCGAAACGAGATAGAATGTGTACATCGGAACAATTTCATCAATCTTCAGCAGTCTGGTTCTCCGGCTGAGCAATGCTTCTATATCTTGATTAAGAAGGCTGCAAGCGTTGTATTCCAAAAGATAGAAATATCTTACTGGTCTTATTCARTTTTTTTGCCGTGGCTTGCTTCTTCGAGTTCGTCCCGGCAGTGCTGGAGTACCTCATTTTTGAGCTTTTCTTTGAGAACGTTGAAAACTAAACGTCGCGCTTCTTTTTGCATGAAAGCGACCAAGCGCGCTTGCAAAGCAACAAAAAAAACACAAAGCAAAATACACGAAGGAATAGAGAGGCGGAAAAGAAATTTCTAAAAAACTGTTCGAAACCACGGGACACATACGCATACACATATTTTATGATTGATCAAAGAAAGGGAAGCGAGAGATAGAGTGCGAGCAGGAGGGATAAGAGAGTGCAGACGAGTCGCCGTCGTGTTTTGTTTCGAAGTTCATCTTATTGAAGTTCAGAGAAAGTGAAGACCGTGGAAGCGATAGAATCTTCAATATGTTTCTTGGTTCTGTAAAAAAATCCATTCGTTGACTATTCTTTATTCAATGGCATTTTCAAGGATCTGCAACTTTTTCAATTTTCTTTTCCCTGGTTTATCATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTTCTAAATCGAAACGAGATA</pcr_primer_p1>
		<pcr_primer_p2>TTAGTTTTCAACGTTCTCAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACTTCTAAATCGAAACGAGATAGAATGTGTACATCGGAACAATTTCATCAATCTTCAGCAGTCTGGTTCTCCGGCTGAGCAATGCTTCTATATCTTGATTAAGAAGGCTGCAAGCGTTGTATTCCAAAAGATAGAAATATCTTACTGGTCTTATTCATTTTTTTTGCCGTGGCTTGCTTCTTCGAGTTCGTCCCGGCAGTGCTGGAGTACCTCATTTTTGAGCTTTTCTTTGAGAACGTTGAAAACTAA</canonical_amplicon>
		<polymorphic_amplicon>CACTTCTAAATCGAAACGAGATAGAATGTGTACATCGGAACAATTTCATCAATCTTCAGCAGTCTGGTTCTCCGGCTGAGCAATGCTTCTATATCTTGATTAAGAAGGCTGCAAGCGTTGTATTCCAAAAGATAGAAATATCTTACTGGTCTTATTCARTTTTTTTGCCGTGGCTTGCTTCTTCGAGTTCGTCCCGGCAGTGCTGGAGTACCTCATTTTTGAGCTTTTCTTTGAGAACGTTGAAAACTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28802</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>298257</contig_pos>
        <strand></strand>
        <context>AGTTCGTCCC[G/A]GCAGTGCTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTGGTCTTATTCATTTTTTTTGCCGTGGCTTGCTTCTTCGAGTTCGTCCC</left_flank>
        <right_flank>GCAGTGCTGGAGTACCTCATTTTTGAGCTTTTCTTTGAGAACGTTGAAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCGCGAGGAATTGAACTATTGGACCTAACGCTGGAGGACCTAACACCGCCCCGAAACTAGCTGAGCACACCTTCTCAGCGACTACGGTAGCGCAAGCTATGTGTCTGACCAATTTCAATTATGAAAAAGGCTCAAAACAGAAAGCTCCTTGCTCCCATCTTTTACTAAACGAAGACATCCAGAGTTTGAAGTATCATATTCAAGCTTTCCATGACAAATATAAGAAAGAAGTCAGTTGTTAAAGATTGGTACAAGCGGAGCAAGAGAAAAAATAGAAAATTGAAATTACCAAAAGGCAGAATTCACTTCTAAATCGAAACGAGATAGAATGTGTACATCGGAACAATTTCATCAATCTTCAGCAGTCTGGTTCTCCGGCTGAGCAATGCTTCTATATCTTGATTAAGAAGGCTGCAAGCGTTGTATTCCAAAAGATAGAAATATCTTACTGGTCTTATTCATTTTTTTTGCCGTGGCTTGCTTCTTCGAGTTCGTCCCGGCAGTGCTGGAGTACCTCATTTTTGAGCTTTTCTTTGAGAACGTTGAAAACTAAACGTCGCGCTTCTTTTTGCATGAAAGCGACCAAGCGCGCTTGCAAAGCAACAAAAAAAACACAAAGCAAAATACACGAAGGAATAGAGAGGCGGAAAAGAAATTTCTAAAAAACTGTTCGAAACCACGGGACACATACGCATACACATATTTTATGATTGATCAAAGAAAGGGAAGCGAGAGATAGAGTGCGAGCAGGAGGGATAAGAGAGTGCAGACGAGTCGCCGTCGTGTTTTGTTTCGAAGTTCATCTTATTGAAGTTCAGAGAAAGTGAAGACCGTGGAAGCGATAGAATCTTCAATATGTTTCTTGGTTCTGTAAAAAAATCCATTCGTTGACTATTCTTTATTCAATGGCATTTTCAAGGATCTGCAACTTTTTCAATTTTCTTTTCCCTGGTTTATCATTTTCAGTAAGCTTAGTTAGACTAATCCCCAATTTTTTGC</canonical>
            <polymorphic>CTCGCGAGGAATTGAACTATTGGACCTAACGCTGGAGGACCTAACACCGCCCCGAAACTAGCTGAGCACACCTTCTCAGCGACTACGGTAGCGCAAGCTATGTGTCTGACCAATTTCAATTATGAAAAAGGCTCAAAACAGAAAGCTCCTTGCTCCCATCTTTTACTAAACGAAGACATCCAGAGTTTGAAGTATCATATTCAAGCTTTCCATGACAAATATAAGAAAGAAGTCAGTTGTTAAAGATTGGTACAAGCGGAGCAAGAGAAAAAATAGAAAATTGAAATTACCAAAAGGCAGAATTCACTTCTAAATCGAAACGAGATAGAATGTGTACATCGGAACAATTTCATCAATCTTCAGCAGTCTGGTTCTCCGGCTGAGCAATGCTTCTATATCTTGATTAAGAAGGCTGCAAGCGTTGTATTCCAAAAGATAGAAATATCTTACTGGTCTTATTCATTTTTTTTGCCGTGGCTTGCTTCTTCGAGTTCGTCCCRGCAGTGCTGGAGTACCTCATTTTTGAGCTTTTCTTTGAGAACGTTGAAAACTAAACGTCGCGCTTCTTTTTGCATGAAAGCGACCAAGCGCGCTTGCAAAGCAACAAAAAAAACACAAAGCAAAATACACGAAGGAATAGAGAGGCGGAAAAGAAATTTCTAAAAAACTGTTCGAAACCACGGGACACATACGCATACACATATTTTATGATTGATCAAAGAAAGGGAAGCGAGAGATAGAGTGCGAGCAGGAGGGATAAGAGAGTGCAGACGAGTCGCCGTCGTGTTTTGTTTCGAAGTTCATCTTATTGAAGTTCAGAGAAAGTGAAGACCGTGGAAGCGATAGAATCTTCAATATGTTTCTTGGTTCTGTAAAAAAATCCATTCGTTGACTATTCTTTATTCAATGGCATTTTCAAGGATCTGCAACTTTTTCAATTTTCTTTTCCCTGGTTTATCATTTTCAGTAAGCTTAGTTAGACTAATCCCCAATTTTTTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>498 452 50</canonical_bands>
                <polymorphic_bands>950 50</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 376 122</canonical_bands>
                <polymorphic_bands>624 376</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACTTCTAAATCGAAACGAGATA</pcr_primer_p1>
		<pcr_primer_p2>TTAGTTTTCAACGTTCTCAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACTTCTAAATCGAAACGAGATAGAATGTGTACATCGGAACAATTTCATCAATCTTCAGCAGTCTGGTTCTCCGGCTGAGCAATGCTTCTATATCTTGATTAAGAAGGCTGCAAGCGTTGTATTCCAAAAGATAGAAATATCTTACTGGTCTTATTCATTTTTTTTGCCGTGGCTTGCTTCTTCGAGTTCGTCCCGGCAGTGCTGGAGTACCTCATTTTTGAGCTTTTCTTTGAGAACGTTGAAAACTAA</canonical_amplicon>
		<polymorphic_amplicon>CACTTCTAAATCGAAACGAGATAGAATGTGTACATCGGAACAATTTCATCAATCTTCAGCAGTCTGGTTCTCCGGCTGAGCAATGCTTCTATATCTTGATTAAGAAGGCTGCAAGCGTTGTATTCCAAAAGATAGAAATATCTTACTGGTCTTATTCATTTTTTTTGCCGTGGCTTGCTTCTTCGAGTTCGTCCCRGCAGTGCTGGAGTACCTCATTTTTGAGCTTTTCTTTGAGAACGTTGAAAACTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28803</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>298328</contig_pos>
        <strand>+</strand>
        <context>CGCTTCTTTT[C/T]GCATGAAAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGAGCTTTTCTTTGAGAACGTTGAAAACTAAACGTCGCGCTTCTTTT</left_flank>
        <right_flank>GCATGAAAGCGACCAAGCGCGCTTGCAAAGCAACAAAAAAAACACAAAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCTCAGCGACTACGGTAGCGCAAGCTATGTGTCTGACCAATTTCAATTATGAAAAAGGCTCAAAACAGAAAGCTCCTTGCTCCCATCTTTTACTAAACGAAGACATCCAGAGTTTGAAGTATCATATTCAAGCTTTCCATGACAAATATAAGAAAGAAGTCAGTTGTTAAAGATTGGTACAAGCGGAGCAAGAGAAAAAATAGAAAATTGAAATTACCAAAAGGCAGAATTCACTTCTAAATCGAAACGAGATAGAATGTGTACATCGGAACAATTTCATCAATCTTCAGCAGTCTGGTTCTCCGGCTGAGCAATGCTTCTATATCTTGATTAAGAAGGCTGCAAGCGTTGTATTCCAAAAGATAGAAATATCTTACTGGTCTTATTCATTTTTTTTGCCGTGGCTTGCTTCTTCGAGTTCGTCCCGGCAGTGCTGGAGTACCTCATTTTTGAGCTTTTCTTTGAGAACGTTGAAAACTAAACGTCGCGCTTCTTTTTGCATGAAAGCGACCAAGCGCGCTTGCAAAGCAACAAAAAAAACACAAAGCAAAATACACGAAGGAATAGAGAGGCGGAAAAGAAATTTCTAAAAAACTGTTCGAAACCACGGGACACATACGCATACACATATTTTATGATTGATCAAAGAAAGGGAAGCGAGAGATAGAGTGCGAGCAGGAGGGATAAGAGAGTGCAGACGAGTCGCCGTCGTGTTTTGTTTCGAAGTTCATCTTATTGAAGTTCAGAGAAAGTGAAGACCGTGGAAGCGATAGAATCTTCAATATGTTTCTTGGTTCTGTAAAAAAATCCATTCGTTGACTATTCTTTATTCAATGGCATTTTCAAGGATCTGCAACTTTTTCAATTTTCTTTTCCCTGGTTTATCATTTTCAGTAAGCTTAGTTAGACTAATCCCCAATTTTTTGCACCGGAATCCGATGAACTTTGAAACAAAACACGATATGGGCACGTATATTCTCTTTTATCCTCTGTTTTCT</canonical>
            <polymorphic>CTTCTCAGCGACTACGGTAGCGCAAGCTATGTGTCTGACCAATTTCAATTATGAAAAAGGCTCAAAACAGAAAGCTCCTTGCTCCCATCTTTTACTAAACGAAGACATCCAGAGTTTGAAGTATCATATTCAAGCTTTCCATGACAAATATAAGAAAGAAGTCAGTTGTTAAAGATTGGTACAAGCGGAGCAAGAGAAAAAATAGAAAATTGAAATTACCAAAAGGCAGAATTCACTTCTAAATCGAAACGAGATAGAATGTGTACATCGGAACAATTTCATCAATCTTCAGCAGTCTGGTTCTCCGGCTGAGCAATGCTTCTATATCTTGATTAAGAAGGCTGCAAGCGTTGTATTCCAAAAGATAGAAATATCTTACTGGTCTTATTCATTTTTTTTGCCGTGGCTTGCTTCTTCGAGTTCGTCCCGGCAGTGCTGGAGTACCTCATTTTTGAGCTTTTCTTTGAGAACGTTGAAAACTAAACGTCGCGCTTCTTTTYGCATGAAAGCGACCAAGCGCGCTTGCAAAGCAACAAAAAAAACACAAAGCAAAATACACGAAGGAATAGAGAGGCGGAAAAGAAATTTCTAAAAAACTGTTCGAAACCACGGGACACATACGCATACACATATTTTATGATTGATCAAAGAAAGGGAAGCGAGAGATAGAGTGCGAGCAGGAGGGATAAGAGAGTGCAGACGAGTCGCCGTCGTGTTTTGTTTCGAAGTTCATCTTATTGAAGTTCAGAGAAAGTGAAGACCGTGGAAGCGATAGAATCTTCAATATGTTTCTTGGTTCTGTAAAAAAATCCATTCGTTGACTATTCTTTATTCAATGGCATTTTCAAGGATCTGCAACTTTTTCAATTTTCTTTTCCCTGGTTTATCATTTTCAGTAAGCTTAGTTAGACTAATCCCCAATTTTTTGCACCGGAATCCGATGAACTTTGAAACAAAACACGATATGGGCACGTATATTCTCTTTTATCCTCTGTTTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>344 171 159 157 73 72 24</canonical_bands>
                <polymorphic_bands>344 181 171 159 73 72</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCAATGCTTCTATATCTTGATT</pcr_primer_p1>
		<pcr_primer_p2>CGTGTATTTTGCTTTGTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGCAATGCTTCTATATCTTGATTAAGAAGGCTGCAAGCGTTGTATTCCAAAAGATAGAAATATCTTACTGGTCTTATTCATTTTTTTTGCCGTGGCTTGCTTCTTCGAGTTCGTCCCGGCAGTGCTGGAGTACCTCATTTTTGAGCTTTTCTTTGAGAACGTTGAAAACTAAACGTCGCGCTTCTTTTTGCATGAAAGCGACCAAGCGCGCTTGCAAAGCAACAAAAAAAACACAAAGCAAAATACACG</canonical_amplicon>
		<polymorphic_amplicon>AGCAATGCTTCTATATCTTGATTAAGAAGGCTGCAAGCGTTGTATTCCAAAAGATAGAAATATCTTACTGGTCTTATTCATTTTTTTTGCCGTGGCTTGCTTCTTCGAGTTCGTCCCGGCAGTGCTGGAGTACCTCATTTTTGAGCTTTTCTTTGAGAACGTTGAAAACTAAACGTCGCGCTTCTTTTYGCATGAAAGCGACCAAGCGCGCTTGCAAAGCAACAAAAAAAACACAAAGCAAAATACACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28804</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>298353</contig_pos>
        <strand>+</strand>
        <context>AAGCGCGCTT[A/G]CAAAGCAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAACTAAACGTCGCGCTTCTTTTTGCATGAAAGCGACCAAGCGCGCTT</left_flank>
        <right_flank>CAAAGCAACAAAAAAAACACAAAGCAAAATACACGAAGGAATAGAGAGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTATGTGTCTGACCAATTTCAATTATGAAAAAGGCTCAAAACAGAAAGCTCCTTGCTCCCATCTTTTACTAAACGAAGACATCCAGAGTTTGAAGTATCATATTCAAGCTTTCCATGACAAATATAAGAAAGAAGTCAGTTGTTAAAGATTGGTACAAGCGGAGCAAGAGAAAAAATAGAAAATTGAAATTACCAAAAGGCAGAATTCACTTCTAAATCGAAACGAGATAGAATGTGTACATCGGAACAATTTCATCAATCTTCAGCAGTCTGGTTCTCCGGCTGAGCAATGCTTCTATATCTTGATTAAGAAGGCTGCAAGCGTTGTATTCCAAAAGATAGAAATATCTTACTGGTCTTATTCATTTTTTTTGCCGTGGCTTGCTTCTTCGAGTTCGTCCCGGCAGTGCTGGAGTACCTCATTTTTGAGCTTTTCTTTGAGAACGTTGAAAACTAAACGTCGCGCTTCTTTTTGCATGAAAGCGACCAAGCGCGCTTGCAAAGCAACAAAAAAAACACAAAGCAAAATACACGAAGGAATAGAGAGGCGGAAAAGAAATTTCTAAAAAACTGTTCGAAACCACGGGACACATACGCATACACATATTTTATGATTGATCAAAGAAAGGGAAGCGAGAGATAGAGTGCGAGCAGGAGGGATAAGAGAGTGCAGACGAGTCGCCGTCGTGTTTTGTTTCGAAGTTCATCTTATTGAAGTTCAGAGAAAGTGAAGACCGTGGAAGCGATAGAATCTTCAATATGTTTCTTGGTTCTGTAAAAAAATCCATTCGTTGACTATTCTTTATTCAATGGCATTTTCAAGGATCTGCAACTTTTTCAATTTTCTTTTCCCTGGTTTATCATTTTCAGTAAGCTTAGTTAGACTAATCCCCAATTTTTTGCACCGGAATCCGATGAACTTTGAAACAAAACACGATATGGGCACGTATATTCTCTTTTATCCTCTGTTTTCTTTGTGTTCCTTATAAGTGAGCGACT</canonical>
            <polymorphic>GCTATGTGTCTGACCAATTTCAATTATGAAAAAGGCTCAAAACAGAAAGCTCCTTGCTCCCATCTTTTACTAAACGAAGACATCCAGAGTTTGAAGTATCATATTCAAGCTTTCCATGACAAATATAAGAAAGAAGTCAGTTGTTAAAGATTGGTACAAGCGGAGCAAGAGAAAAAATAGAAAATTGAAATTACCAAAAGGCAGAATTCACTTCTAAATCGAAACGAGATAGAATGTGTACATCGGAACAATTTCATCAATCTTCAGCAGTCTGGTTCTCCGGCTGAGCAATGCTTCTATATCTTGATTAAGAAGGCTGCAAGCGTTGTATTCCAAAAGATAGAAATATCTTACTGGTCTTATTCATTTTTTTTGCCGTGGCTTGCTTCTTCGAGTTCGTCCCGGCAGTGCTGGAGTACCTCATTTTTGAGCTTTTCTTTGAGAACGTTGAAAACTAAACGTCGCGCTTCTTTTTGCATGAAAGCGACCAAGCGCGCTTRCAAAGCAACAAAAAAAACACAAAGCAAAATACACGAAGGAATAGAGAGGCGGAAAAGAAATTTCTAAAAAACTGTTCGAAACCACGGGACACATACGCATACACATATTTTATGATTGATCAAAGAAAGGGAAGCGAGAGATAGAGTGCGAGCAGGAGGGATAAGAGAGTGCAGACGAGTCGCCGTCGTGTTTTGTTTCGAAGTTCATCTTATTGAAGTTCAGAGAAAGTGAAGACCGTGGAAGCGATAGAATCTTCAATATGTTTCTTGGTTCTGTAAAAAAATCCATTCGTTGACTATTCTTTATTCAATGGCATTTTCAAGGATCTGCAACTTTTTCAATTTTCTTTTCCCTGGTTTATCATTTTCAGTAAGCTTAGTTAGACTAATCCCCAATTTTTTGCACCGGAATCCGATGAACTTTGAAACAAAACACGATATGGGCACGTATATTCTCTTTTATCCTCTGTTTTCTTTGTGTTCCTTATAAGTGAGCGACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>350 321 152 111 62 4</canonical_bands>
                <polymorphic_bands>350 321 156 111 62</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>319 171 159 157 97 73 24</canonical_bands>
                <polymorphic_bands>319 195 159 157 97 73</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTTTGAGAACGTTGAAAACTA</pcr_primer_p1>
		<pcr_primer_p2>GACTCGTCTGCACTCTCTTATC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTCTTTGAGAACGTTGAAAACTAAACGTCGCGCTTCTTTTTGCATGAAAGCGACCAAGCGCGCTTGCAAAGCAACAAAAAAAACACAAAGCAAAATACACGAAGGAATAGAGAGGCGGAAAAGAAATTTCTAAAAAACTGTTCGAAACCACGGGACACATACGCATACACATATTTTATGATTGATCAAAGAAAGGGAAGCGAGAGATAGAGTGCGAGCAGGAGGGATAAGAGAGTGCAGACGAGTC</canonical_amplicon>
		<polymorphic_amplicon>TTCTTTGAGAACGTTGAAAACTAAACGTCGCGCTTCTTTTTGCATGAAAGCGACCAAGCGCGCTTRCAAAGCAACAAAAAAAACACAAAGCAAAATACACGAAGGAATAGAGAGGCGGAAAAGAAATTTCTAAAAAACTGTTCGAAACCACGGGACACATACGCATACACATATTTTATGATTGATCAAAGAAAGGGAAGCGAGAGATAGAGTGCGAGCAGGAGGGATAAGAGAGTGCAGACGAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28805</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>298892</contig_pos>
        <strand>+</strand>
        <context>CTCAACACCT[C/T]GCTAACCCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGTGAGCGACTTCCATTTTTAAGTGTAAAACGAGAGAATCTCAACACCT</left_flank>
        <right_flank>GCTAACCCAGATTTTGATGAAAATTTAGGATGAGAATTATCTTTCTAGAC</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAGAGAGGCGGAAAAGAAATTTCTAAAAAACTGTTCGAAACCACGGGACACATACGCATACACATATTTTATGATTGATCAAAGAAAGGGAAGCGAGAGATAGAGTGCGAGCAGGAGGGATAAGAGAGTGCAGACGAGTCGCCGTCGTGTTTTGTTTCGAAGTTCATCTTATTGAAGTTCAGAGAAAGTGAAGACCGTGGAAGCGATAGAATCTTCAATATGTTTCTTGGTTCTGTAAAAAAATCCATTCGTTGACTATTCTTTATTCAATGGCATTTTCAAGGATCTGCAACTTTTTCAATTTTCTTTTCCCTGGTTTATCATTTTCAGTAAGCTTAGTTAGACTAATCCCCAATTTTTTGCACCGGAATCCGATGAACTTTGAAACAAAACACGATATGGGCACGTATATTCTCTTTTATCCTCTGTTTTCTTTGTGTTCCTTATAAGTGAGCGACTTCCATTTTTAAGTGTAAAACGAGAGAATCTCAACACCTCGCTAACCCAGATTTTGATGAAAATTTAGGATGAGAATTATCTTTCTAGACAACTCCAAAAATTTTAGAAACCAATCATGAGTTTTAGCCAAGTCATATCAGTTTCTGTATCAAAAATCGCCTTTTTTGTTAATTTTGGAATGCATAGAGGAAAAAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTTCCTTTGTAAGGTTCCAAAAATTGGTAACTATCAAAGCTACATGAAACTTGAAATTCACTACATGAAACATTCGCTACATGAAACTTGAAATTCGTTGCATTTTTTGGAAT</canonical>
            <polymorphic>AATAGAGAGGCGGAAAAGAAATTTCTAAAAAACTGTTCGAAACCACGGGACACATACGCATACACATATTTTATGATTGATCAAAGAAAGGGAAGCGAGAGATAGAGTGCGAGCAGGAGGGATAAGAGAGTGCAGACGAGTCGCCGTCGTGTTTTGTTTCGAAGTTCATCTTATTGAAGTTCAGAGAAAGTGAAGACCGTGGAAGCGATAGAATCTTCAATATGTTTCTTGGTTCTGTAAAAAAATCCATTCGTTGACTATTCTTTATTCAATGGCATTTTCAAGGATCTGCAACTTTTTCAATTTTCTTTTCCCTGGTTTATCATTTTCAGTAAGCTTAGTTAGACTAATCCCCAATTTTTTGCACCGGAATCCGATGAACTTTGAAACAAAACACGATATGGGCACGTATATTCTCTTTTATCCTCTGTTTTCTTTGTGTTCCTTATAAGTGAGCGACTTCCATTTTTAAGTGTAAAACGAGAGAATCTCAACACCTYGCTAACCCAGATTTTGATGAAAATTTAGGATGAGAATTATCTTTCTAGACAACTCCAAAAATTTTAGAAACCAATCATGAGTTTTAGCCAAGTCATATCAGTTTCTGTATCAAAAATCGCCTTTTTTGTTAATTTTGGAATGCATAGAGGAAAAAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTTCCTTTGTAAGGTTCCAAAAATTGGTAACTATCAAAGCTACATGAAACTTGAAATTCACTACATGAAACATTCGCTACATGAAACTTGAAATTCGTTGCATTTTTTGGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTGGTTTATCATTTTCAGTAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGGAGTTGTCTAGAAAGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCTGGTTTATCATTTTCAGTAAGCTTAGTTAGACTAATCCCCAATTTTTTGCACCGGAATCCGATGAACTTTGAAACAAAACACGATATGGGCACGTATATTCTCTTTTATCCTCTGTTTTCTTTGTGTTCCTTATAAGTGAGCGACTTCCATTTTTAAGTGTAAAACGAGAGAATCTCAACACCTCGCTAACCCAGATTTTGATGAAAATTTAGGATGAGAATTATCTTTCTAGACAACTCCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CCTGGTTTATCATTTTCAGTAAGCTTAGTTAGACTAATCCCCAATTTTTTGCACCGGAATCCGATGAACTTTGAAACAAAACACGATATGGGCACGTATATTCTCTTTTATCCTCTGTTTTCTTTGTGTTCCTTATAAGTGAGCGACTTCCATTTTTAAGTGTAAAACGAGAGAATCTCAACACCTYGCTAACCCAGATTTTGATGAAAATTTAGGATGAGAATTATCTTTCTAGACAACTCCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28806</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>298929</contig_pos>
        <strand>+</strand>
        <context>AGGATGAGAA[G/T]TATCTTTCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATCTCAACACCTCGCTAACCCAGATTTTGATGAAAATTTAGGATGAGAA</left_flank>
        <right_flank>TATCTTTCTAGACAACTCCAAAAATTTTAGAAACCAATCATGAGTTTTAG</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAAACCACGGGACACATACGCATACACATATTTTATGATTGATCAAAGAAAGGGAAGCGAGAGATAGAGTGCGAGCAGGAGGGATAAGAGAGTGCAGACGAGTCGCCGTCGTGTTTTGTTTCGAAGTTCATCTTATTGAAGTTCAGAGAAAGTGAAGACCGTGGAAGCGATAGAATCTTCAATATGTTTCTTGGTTCTGTAAAAAAATCCATTCGTTGACTATTCTTTATTCAATGGCATTTTCAAGGATCTGCAACTTTTTCAATTTTCTTTTCCCTGGTTTATCATTTTCAGTAAGCTTAGTTAGACTAATCCCCAATTTTTTGCACCGGAATCCGATGAACTTTGAAACAAAACACGATATGGGCACGTATATTCTCTTTTATCCTCTGTTTTCTTTGTGTTCCTTATAAGTGAGCGACTTCCATTTTTAAGTGTAAAACGAGAGAATCTCAACACCTCGCTAACCCAGATTTTGATGAAAATTTAGGATGAGAATTATCTTTCTAGACAACTCCAAAAATTTTAGAAACCAATCATGAGTTTTAGCCAAGTCATATCAGTTTCTGTATCAAAAATCGCCTTTTTTGTTAATTTTGGAATGCATAGAGGAAAAAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTTCCTTTGTAAGGTTCCAAAAATTGGTAACTATCAAAGCTACATGAAACTTGAAATTCACTACATGAAACATTCGCTACATGAAACTTGAAATTCGTTGCATTTTTTGGAATTGTATGACATTTCATTTTTGAGGCATGTTGTCGAAAA</canonical>
            <polymorphic>CGAAACCACGGGACACATACGCATACACATATTTTATGATTGATCAAAGAAAGGGAAGCGAGAGATAGAGTGCGAGCAGGAGGGATAAGAGAGTGCAGACGAGTCGCCGTCGTGTTTTGTTTCGAAGTTCATCTTATTGAAGTTCAGAGAAAGTGAAGACCGTGGAAGCGATAGAATCTTCAATATGTTTCTTGGTTCTGTAAAAAAATCCATTCGTTGACTATTCTTTATTCAATGGCATTTTCAAGGATCTGCAACTTTTTCAATTTTCTTTTCCCTGGTTTATCATTTTCAGTAAGCTTAGTTAGACTAATCCCCAATTTTTTGCACCGGAATCCGATGAACTTTGAAACAAAACACGATATGGGCACGTATATTCTCTTTTATCCTCTGTTTTCTTTGTGTTCCTTATAAGTGAGCGACTTCCATTTTTAAGTGTAAAACGAGAGAATCTCAACACCTCGCTAACCCAGATTTTGATGAAAATTTAGGATGAGAAKTATCTTTCTAGACAACTCCAAAAATTTTAGAAACCAATCATGAGTTTTAGCCAAGTCATATCAGTTTCTGTATCAAAAATCGCCTTTTTTGTTAATTTTGGAATGCATAGAGGAAAAAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTTCCTTTGTAAGGTTCCAAAAATTGGTAACTATCAAAGCTACATGAAACTTGAAATTCACTACATGAAACATTCGCTACATGAAACTTGAAATTCGTTGCATTTTTTGGAATTGTATGACATTTCATTTTTGAGGCATGTTGTCGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>264 166 79 71 65 54 53 40 40 37 33 33 25 19 13 8</canonical_bands>
                <polymorphic_bands>264 166 79 71 65 54 53 40 40 38 37 33 33 19 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACTTTGAAACAAAACACGATA</pcr_primer_p1>
		<pcr_primer_p2>CGATTTTTGATACAGAAACTGAT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GAACTTTGAAACAAAACACGATATGGGCACGTATATTCTCTTTTATCCTCTGTTTTCTTTGTGTTCCTTATAAGTGAGCGACTTCCATTTTTAAGTGTAAAACGAGAGAATCTCAACACCTCGCTAACCCAGATTTTGATGAAAATTTAGGATGAGAATTATCTTTCTAGACAACTCCAAAAATTTTAGAAACCAATCATGAGTTTTAGCCAAGTCATATCAGTTTCTGTATCAAAAATCG</canonical_amplicon>
		<polymorphic_amplicon>GAACTTTGAAACAAAACACGATATGGGCACGTATATTCTCTTTTATCCTCTGTTTTCTTTGTGTTCCTTATAAGTGAGCGACTTCCATTTTTAAGTGTAAAACGAGAGAATCTCAACACCTCGCTAACCCAGATTTTGATGAAAATTTAGGATGAGAAKTATCTTTCTAGACAACTCCAAAAATTTTAGAAACCAATCATGAGTTTTAGCCAAGTCATATCAGTTTCTGTATCAAAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28807</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>299038</contig_pos>
        <strand>+</strand>
        <context>TGGAATGCAT[A/G]GAGWRAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATCAGTTTCTGTATCAAAAATCGCCTTTTTTGTTAATTTTGGAATGCAT</left_flank>
        <right_flank>GAGGAAAAAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTGTTTTGTTTCGAAGTTCATCTTATTGAAGTTCAGAGAAAGTGAAGACCGTGGAAGCGATAGAATCTTCAATATGTTTCTTGGTTCTGTAAAAAAATCCATTCGTTGACTATTCTTTATTCAATGGCATTTTCAAGGATCTGCAACTTTTTCAATTTTCTTTTCCCTGGTTTATCATTTTCAGTAAGCTTAGTTAGACTAATCCCCAATTTTTTGCACCGGAATCCGATGAACTTTGAAACAAAACACGATATGGGCACGTATATTCTCTTTTATCCTCTGTTTTCTTTGTGTTCCTTATAAGTGAGCGACTTCCATTTTTAAGTGTAAAACGAGAGAATCTCAACACCTCGCTAACCCAGATTTTGATGAAAATTTAGGATGAGAATTATCTTTCTAGACAACTCCAAAAATTTTAGAAACCAATCATGAGTTTTAGCCAAGTCATATCAGTTTCTGTATCAAAAATCGCCTTTTTTGTTAATTTTGGAATGCATAGAGGAAAAAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTTCCTTTGTAAGGTTCCAAAAATTGGTAACTATCAAAGCTACATGAAACTTGAAATTCACTACATGAAACATTCGCTACATGAAACTTGAAATTCGTTGCATTTTTTGGAATTGTATGACATTTCATTTTTGAGGCATGTTGTCGAAAAACAAAATGATTTATTTTCGAGGGTTTTCACATTTTTTCCATTTATTCGAGAGTTTATAATCCAACAAATTTCAGGTTCTGAAACGTCCTAGAAGATTAGAAAATTGTTT</canonical>
            <polymorphic>TCGTGTTTTGTTTCGAAGTTCATCTTATTGAAGTTCAGAGAAAGTGAAGACCGTGGAAGCGATAGAATCTTCAATATGTTTCTTGGTTCTGTAAAAAAATCCATTCGTTGACTATTCTTTATTCAATGGCATTTTCAAGGATCTGCAACTTTTTCAATTTTCTTTTCCCTGGTTTATCATTTTCAGTAAGCTTAGTTAGACTAATCCCCAATTTTTTGCACCGGAATCCGATGAACTTTGAAACAAAACACGATATGGGCACGTATATTCTCTTTTATCCTCTGTTTTCTTTGTGTTCCTTATAAGTGAGCGACTTCCATTTTTAAGTGTAAAACGAGAGAATCTCAACACCTCGCTAACCCAGATTTTGATGAAAATTTAGGATGAGAATTATCTTTCTAGACAACTCCAAAAATTTTAGAAACCAATCATGAGTTTTAGCCAAGTCATATCAGTTTCTGTATCAAAAATCGCCTTTTTTGTTAATTTTGGAATGCATRGAGGAAAAAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTTCCTTTGTAAGGTTCCAAAAATTGGTAACTATCAAAGCTACATGAAACTTGAAATTCACTACATGAAACATTCGCTACATGAAACTTGAAATTCGTTGCATTTTTTGGAATTGTATGACATTTCATTTTTGAGGCATGTTGTCGAAAAACAAAATGATTTATTTTCGAGGGTTTTCACATTTTTTCCATTTATTCGAGAGTTTATAATCCAACAAATTTCAGGTTCTGAAACGTCCTAGAAGATTAGAAAATTGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCAAGTCATATCAGTTTCTGTA</pcr_primer_p1>
		<pcr_primer_p2>AAACCTCAACACCTTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>304</pcr_amplicon_size>
		<canonical_amplicon>GCCAAGTCATATCAGTTTCTGTATCAAAAATCGCCTTTTTTGTTAATTTTGGAATGCATAGAGGAAAAAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTT</canonical_amplicon>
		<polymorphic_amplicon>GCCAAGTCATATCAGTTTCTGTATCAAAAATCGCCTTTTTTGTTAATTTTGGAATGCATRGAGGAAAAAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28808</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>299042</contig_pos>
        <strand>+</strand>
        <context>ATGCATRGAG[A/T]RAAAAAAAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTTTCTGTATCAAAAATCGCCTTTTTTGTTAATTTTGGAATGCATAGAG</left_flank>
        <right_flank>AAAAAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTGTTTCGAAGTTCATCTTATTGAAGTTCAGAGAAAGTGAAGACCGTGGAAGCGATAGAATCTTCAATATGTTTCTTGGTTCTGTAAAAAAATCCATTCGTTGACTATTCTTTATTCAATGGCATTTTCAAGGATCTGCAACTTTTTCAATTTTCTTTTCCCTGGTTTATCATTTTCAGTAAGCTTAGTTAGACTAATCCCCAATTTTTTGCACCGGAATCCGATGAACTTTGAAACAAAACACGATATGGGCACGTATATTCTCTTTTATCCTCTGTTTTCTTTGTGTTCCTTATAAGTGAGCGACTTCCATTTTTAAGTGTAAAACGAGAGAATCTCAACACCTCGCTAACCCAGATTTTGATGAAAATTTAGGATGAGAATTATCTTTCTAGACAACTCCAAAAATTTTAGAAACCAATCATGAGTTTTAGCCAAGTCATATCAGTTTCTGTATCAAAAATCGCCTTTTTTGTTAATTTTGGAATGCATAGAGGAAAAAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTTCCTTTGTAAGGTTCCAAAAATTGGTAACTATCAAAGCTACATGAAACTTGAAATTCACTACATGAAACATTCGCTACATGAAACTTGAAATTCGTTGCATTTTTTGGAATTGTATGACATTTCATTTTTGAGGCATGTTGTCGAAAAACAAAATGATTTATTTTCGAGGGTTTTCACATTTTTTCCATTTATTCGAGAGTTTATAATCCAACAAATTTCAGGTTCTGAAACGTCCTAGAAGATTAGAAAATTGTTTTTGA</canonical>
            <polymorphic>GTTTTGTTTCGAAGTTCATCTTATTGAAGTTCAGAGAAAGTGAAGACCGTGGAAGCGATAGAATCTTCAATATGTTTCTTGGTTCTGTAAAAAAATCCATTCGTTGACTATTCTTTATTCAATGGCATTTTCAAGGATCTGCAACTTTTTCAATTTTCTTTTCCCTGGTTTATCATTTTCAGTAAGCTTAGTTAGACTAATCCCCAATTTTTTGCACCGGAATCCGATGAACTTTGAAACAAAACACGATATGGGCACGTATATTCTCTTTTATCCTCTGTTTTCTTTGTGTTCCTTATAAGTGAGCGACTTCCATTTTTAAGTGTAAAACGAGAGAATCTCAACACCTCGCTAACCCAGATTTTGATGAAAATTTAGGATGAGAATTATCTTTCTAGACAACTCCAAAAATTTTAGAAACCAATCATGAGTTTTAGCCAAGTCATATCAGTTTCTGTATCAAAAATCGCCTTTTTTGTTAATTTTGGAATGCATAGAGWAAAAAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTTCCTTTGTAAGGTTCCAAAAATTGGTAACTATCAAAGCTACATGAAACTTGAAATTCACTACATGAAACATTCGCTACATGAAACTTGAAATTCGTTGCATTTTTTGGAATTGTATGACATTTCATTTTTGAGGCATGTTGTCGAAAAACAAAATGATTTATTTTCGAGGGTTTTCACATTTTTTCCATTTATTCGAGAGTTTATAATCCAACAAATTTCAGGTTCTGAAACGTCCTAGAAGATTAGAAAATTGTTTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCAAGTCATATCAGTTTCTGTA</pcr_primer_p1>
		<pcr_primer_p2>AAACCTCAACACCTTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>304</pcr_amplicon_size>
		<canonical_amplicon>GCCAAGTCATATCAGTTTCTGTATCAAAAATCGCCTTTTTTGTTAATTTTGGAATGCATAGAGGAAAAAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTT</canonical_amplicon>
		<polymorphic_amplicon>GCCAAGTCATATCAGTTTCTGTATCAAAAATCGCCTTTTTTGTTAATTTTGGAATGCATAGAGWAAAAAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28809</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>299043</contig_pos>
        <strand>+</strand>
        <context>TGCATRGAGW[A/G]AAAAAAAGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTCTGTATCAAAAATCGCCTTTTTTGTTAATTTTGGAATGCATAGAGG</left_flank>
        <right_flank>AAAAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGTTTCGAAGTTCATCTTATTGAAGTTCAGAGAAAGTGAAGACCGTGGAAGCGATAGAATCTTCAATATGTTTCTTGGTTCTGTAAAAAAATCCATTCGTTGACTATTCTTTATTCAATGGCATTTTCAAGGATCTGCAACTTTTTCAATTTTCTTTTCCCTGGTTTATCATTTTCAGTAAGCTTAGTTAGACTAATCCCCAATTTTTTGCACCGGAATCCGATGAACTTTGAAACAAAACACGATATGGGCACGTATATTCTCTTTTATCCTCTGTTTTCTTTGTGTTCCTTATAAGTGAGCGACTTCCATTTTTAAGTGTAAAACGAGAGAATCTCAACACCTCGCTAACCCAGATTTTGATGAAAATTTAGGATGAGAATTATCTTTCTAGACAACTCCAAAAATTTTAGAAACCAATCATGAGTTTTAGCCAAGTCATATCAGTTTCTGTATCAAAAATCGCCTTTTTTGTTAATTTTGGAATGCATAGAGGAAAAAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTTCCTTTGTAAGGTTCCAAAAATTGGTAACTATCAAAGCTACATGAAACTTGAAATTCACTACATGAAACATTCGCTACATGAAACTTGAAATTCGTTGCATTTTTTGGAATTGTATGACATTTCATTTTTGAGGCATGTTGTCGAAAAACAAAATGATTTATTTTCGAGGGTTTTCACATTTTTTCCATTTATTCGAGAGTTTATAATCCAACAAATTTCAGGTTCTGAAACGTCCTAGAAGATTAGAAAATTGTTTTTGAA</canonical>
            <polymorphic>TTTTGTTTCGAAGTTCATCTTATTGAAGTTCAGAGAAAGTGAAGACCGTGGAAGCGATAGAATCTTCAATATGTTTCTTGGTTCTGTAAAAAAATCCATTCGTTGACTATTCTTTATTCAATGGCATTTTCAAGGATCTGCAACTTTTTCAATTTTCTTTTCCCTGGTTTATCATTTTCAGTAAGCTTAGTTAGACTAATCCCCAATTTTTTGCACCGGAATCCGATGAACTTTGAAACAAAACACGATATGGGCACGTATATTCTCTTTTATCCTCTGTTTTCTTTGTGTTCCTTATAAGTGAGCGACTTCCATTTTTAAGTGTAAAACGAGAGAATCTCAACACCTCGCTAACCCAGATTTTGATGAAAATTTAGGATGAGAATTATCTTTCTAGACAACTCCAAAAATTTTAGAAACCAATCATGAGTTTTAGCCAAGTCATATCAGTTTCTGTATCAAAAATCGCCTTTTTTGTTAATTTTGGAATGCATAGAGGRAAAAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTTCCTTTGTAAGGTTCCAAAAATTGGTAACTATCAAAGCTACATGAAACTTGAAATTCACTACATGAAACATTCGCTACATGAAACTTGAAATTCGTTGCATTTTTTGGAATTGTATGACATTTCATTTTTGAGGCATGTTGTCGAAAAACAAAATGATTTATTTTCGAGGGTTTTCACATTTTTTCCATTTATTCGAGAGTTTATAATCCAACAAATTTCAGGTTCTGAAACGTCCTAGAAGATTAGAAAATTGTTTTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCAAGTCATATCAGTTTCTGTA</pcr_primer_p1>
		<pcr_primer_p2>AAACCTCAACACCTTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>304</pcr_amplicon_size>
		<canonical_amplicon>GCCAAGTCATATCAGTTTCTGTATCAAAAATCGCCTTTTTTGTTAATTTTGGAATGCATAGAGGAAAAAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTT</canonical_amplicon>
		<polymorphic_amplicon>GCCAAGTCATATCAGTTTCTGTATCAAAAATCGCCTTTTTTGTTAATTTTGGAATGCATAGAGGRAAAAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28810</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>299117</contig_pos>
        <strand></strand>
        <context>catccaatct[G/A]agcagaatac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCT</left_flank>
        <right_flank>AGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTGGTTCTGTAAAAAAATCCATTCGTTGACTATTCTTTATTCAATGGCATTTTCAAGGATCTGCAACTTTTTCAATTTTCTTTTCCCTGGTTTATCATTTTCAGTAAGCTTAGTTAGACTAATCCCCAATTTTTTGCACCGGAATCCGATGAACTTTGAAACAAAACACGATATGGGCACGTATATTCTCTTTTATCCTCTGTTTTCTTTGTGTTCCTTATAAGTGAGCGACTTCCATTTTTAAGTGTAAAACGAGAGAATCTCAACACCTCGCTAACCCAGATTTTGATGAAAATTTAGGATGAGAATTATCTTTCTAGACAACTCCAAAAATTTTAGAAACCAATCATGAGTTTTAGCCAAGTCATATCAGTTTCTGTATCAAAAATCGCCTTTTTTGTTAATTTTGGAATGCATAGAGGAAAAAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTTCCTTTGTAAGGTTCCAAAAATTGGTAACTATCAAAGCTACATGAAACTTGAAATTCACTACATGAAACATTCGCTACATGAAACTTGAAATTCGTTGCATTTTTTGGAATTGTATGACATTTCATTTTTGAGGCATGTTGTCGAAAAACAAAATGATTTATTTTCGAGGGTTTTCACATTTTTTCCATTTATTCGAGAGTTTATAATCCAACAAATTTCAGGTTCTGAAACGTCCTAGAAGATTAGAAAATTGTTTTTGAAGATCGCTGTTTTGCACTGAAACCGGAATTTTTTAAACTGAAACGGATATAATTTGGCTGAAACTGACGTTAAGT</canonical>
            <polymorphic>TTCTTGGTTCTGTAAAAAAATCCATTCGTTGACTATTCTTTATTCAATGGCATTTTCAAGGATCTGCAACTTTTTCAATTTTCTTTTCCCTGGTTTATCATTTTCAGTAAGCTTAGTTAGACTAATCCCCAATTTTTTGCACCGGAATCCGATGAACTTTGAAACAAAACACGATATGGGCACGTATATTCTCTTTTATCCTCTGTTTTCTTTGTGTTCCTTATAAGTGAGCGACTTCCATTTTTAAGTGTAAAACGAGAGAATCTCAACACCTCGCTAACCCAGATTTTGATGAAAATTTAGGATGAGAATTATCTTTCTAGACAACTCCAAAAATTTTAGAAACCAATCATGAGTTTTAGCCAAGTCATATCAGTTTCTGTATCAAAAATCGCCTTTTTTGTTAATTTTGGAATGCATAGAGGAAAAAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTRAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTTCCTTTGTAAGGTTCCAAAAATTGGTAACTATCAAAGCTACATGAAACTTGAAATTCACTACATGAAACATTCGCTACATGAAACTTGAAATTCGTTGCATTTTTTGGAATTGTATGACATTTCATTTTTGAGGCATGTTGTCGAAAAACAAAATGATTTATTTTCGAGGGTTTTCACATTTTTTCCATTTATTCGAGAGTTTATAATCCAACAAATTTCAGGTTCTGAAACGTCCTAGAAGATTAGAAAATTGTTTTTGAAGATCGCTGTTTTGCACTGAAACCGGAATTTTTTAAACTGAAACGGATATAATTTGGCTGAAACTGACGTTAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>392 349 150 109</canonical_bands>
                <polymorphic_bands>741 150 109</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGGAAAAACCTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTACAAAGGAAACCTCAACAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTTCCTTTGTAAG</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTRAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTTCCTTTGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28811</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>299151</contig_pos>
        <strand></strand>
        <context>ttttgaaacg[C/T]ccaagaagtt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACG</left_flank>
        <right_flank>CCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTTTATTCAATGGCATTTTCAAGGATCTGCAACTTTTTCAATTTTCTTTTCCCTGGTTTATCATTTTCAGTAAGCTTAGTTAGACTAATCCCCAATTTTTTGCACCGGAATCCGATGAACTTTGAAACAAAACACGATATGGGCACGTATATTCTCTTTTATCCTCTGTTTTCTTTGTGTTCCTTATAAGTGAGCGACTTCCATTTTTAAGTGTAAAACGAGAGAATCTCAACACCTCGCTAACCCAGATTTTGATGAAAATTTAGGATGAGAATTATCTTTCTAGACAACTCCAAAAATTTTAGAAACCAATCATGAGTTTTAGCCAAGTCATATCAGTTTCTGTATCAAAAATCGCCTTTTTTGTTAATTTTGGAATGCATAGAGGAAAAAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTTCCTTTGTAAGGTTCCAAAAATTGGTAACTATCAAAGCTACATGAAACTTGAAATTCACTACATGAAACATTCGCTACATGAAACTTGAAATTCGTTGCATTTTTTGGAATTGTATGACATTTCATTTTTGAGGCATGTTGTCGAAAAACAAAATGATTTATTTTCGAGGGTTTTCACATTTTTTCCATTTATTCGAGAGTTTATAATCCAACAAATTTCAGGTTCTGAAACGTCCTAGAAGATTAGAAAATTGTTTTTGAAGATCGCTGTTTTGCACTGAAACCGGAATTTTTTAAACTGAAACGGATATAATTTGGCTGAAACTGACGTTAAGTTCTGAAGTTTTCAAATGTGCCTAGATGGGTTGTC</canonical>
            <polymorphic>ATTCTTTATTCAATGGCATTTTCAAGGATCTGCAACTTTTTCAATTTTCTTTTCCCTGGTTTATCATTTTCAGTAAGCTTAGTTAGACTAATCCCCAATTTTTTGCACCGGAATCCGATGAACTTTGAAACAAAACACGATATGGGCACGTATATTCTCTTTTATCCTCTGTTTTCTTTGTGTTCCTTATAAGTGAGCGACTTCCATTTTTAAGTGTAAAACGAGAGAATCTCAACACCTCGCTAACCCAGATTTTGATGAAAATTTAGGATGAGAATTATCTTTCTAGACAACTCCAAAAATTTTAGAAACCAATCATGAGTTTTAGCCAAGTCATATCAGTTTCTGTATCAAAAATCGCCTTTTTTGTTAATTTTGGAATGCATAGAGGAAAAAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGYCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTTCCTTTGTAAGGTTCCAAAAATTGGTAACTATCAAAGCTACATGAAACTTGAAATTCACTACATGAAACATTCGCTACATGAAACTTGAAATTCGTTGCATTTTTTGGAATTGTATGACATTTCATTTTTGAGGCATGTTGTCGAAAAACAAAATGATTTATTTTCGAGGGTTTTCACATTTTTTCCATTTATTCGAGAGTTTATAATCCAACAAATTTCAGGTTCTGAAACGTCCTAGAAGATTAGAAAATTGTTTTTGAAGATCGCTGTTTTGCACTGAAACCGGAATTTTTTAAACTGAAACGGATATAATTTGGCTGAAACTGACGTTAAGTTCTGAAGTTTTCAAATGTGCCTAGATGGGTTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGGAAAAACCTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTACAAAGGAAACCTCAACAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTTCCTTTGTAAG</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGYCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTTCCTTTGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28812</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>299162</contig_pos>
        <strand></strand>
        <context>ccaagaagtt[G/T]agaaaattgt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTT</left_flank>
        <right_flank>AGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGGCATTTTCAAGGATCTGCAACTTTTTCAATTTTCTTTTCCCTGGTTTATCATTTTCAGTAAGCTTAGTTAGACTAATCCCCAATTTTTTGCACCGGAATCCGATGAACTTTGAAACAAAACACGATATGGGCACGTATATTCTCTTTTATCCTCTGTTTTCTTTGTGTTCCTTATAAGTGAGCGACTTCCATTTTTAAGTGTAAAACGAGAGAATCTCAACACCTCGCTAACCCAGATTTTGATGAAAATTTAGGATGAGAATTATCTTTCTAGACAACTCCAAAAATTTTAGAAACCAATCATGAGTTTTAGCCAAGTCATATCAGTTTCTGTATCAAAAATCGCCTTTTTTGTTAATTTTGGAATGCATAGAGGAAAAAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTTCCTTTGTAAGGTTCCAAAAATTGGTAACTATCAAAGCTACATGAAACTTGAAATTCACTACATGAAACATTCGCTACATGAAACTTGAAATTCGTTGCATTTTTTGGAATTGTATGACATTTCATTTTTGAGGCATGTTGTCGAAAAACAAAATGATTTATTTTCGAGGGTTTTCACATTTTTTCCATTTATTCGAGAGTTTATAATCCAACAAATTTCAGGTTCTGAAACGTCCTAGAAGATTAGAAAATTGTTTTTGAAGATCGCTGTTTTGCACTGAAACCGGAATTTTTTAAACTGAAACGGATATAATTTGGCTGAAACTGACGTTAAGTTCTGAAGTTTTCAAATGTGCCTAGATGGGTTGTCCTTGACCTATC</canonical>
            <polymorphic>AATGGCATTTTCAAGGATCTGCAACTTTTTCAATTTTCTTTTCCCTGGTTTATCATTTTCAGTAAGCTTAGTTAGACTAATCCCCAATTTTTTGCACCGGAATCCGATGAACTTTGAAACAAAACACGATATGGGCACGTATATTCTCTTTTATCCTCTGTTTTCTTTGTGTTCCTTATAAGTGAGCGACTTCCATTTTTAAGTGTAAAACGAGAGAATCTCAACACCTCGCTAACCCAGATTTTGATGAAAATTTAGGATGAGAATTATCTTTCTAGACAACTCCAAAAATTTTAGAAACCAATCATGAGTTTTAGCCAAGTCATATCAGTTTCTGTATCAAAAATCGCCTTTTTTGTTAATTTTGGAATGCATAGAGGAAAAAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTKAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTTCCTTTGTAAGGTTCCAAAAATTGGTAACTATCAAAGCTACATGAAACTTGAAATTCACTACATGAAACATTCGCTACATGAAACTTGAAATTCGTTGCATTTTTTGGAATTGTATGACATTTCATTTTTGAGGCATGTTGTCGAAAAACAAAATGATTTATTTTCGAGGGTTTTCACATTTTTTCCATTTATTCGAGAGTTTATAATCCAACAAATTTCAGGTTCTGAAACGTCCTAGAAGATTAGAAAATTGTTTTTGAAGATCGCTGTTTTGCACTGAAACCGGAATTTTTTAAACTGAAACGGATATAATTTGGCTGAAACTGACGTTAAGTTCTGAAGTTTTCAAATGTGCCTAGATGGGTTGTCCTTGACCTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGGAAAAACCTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTACAAAGGAAACCTCAACAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTTCCTTTGTAAG</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTKAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTTCCTTTGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28813</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>299187</contig_pos>
        <strand></strand>
        <context>gaaaatcgct[G/T]ttttgcattg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCT</left_flank>
        <right_flank>TTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCAATTTTCTTTTCCCTGGTTTATCATTTTCAGTAAGCTTAGTTAGACTAATCCCCAATTTTTTGCACCGGAATCCGATGAACTTTGAAACAAAACACGATATGGGCACGTATATTCTCTTTTATCCTCTGTTTTCTTTGTGTTCCTTATAAGTGAGCGACTTCCATTTTTAAGTGTAAAACGAGAGAATCTCAACACCTCGCTAACCCAGATTTTGATGAAAATTTAGGATGAGAATTATCTTTCTAGACAACTCCAAAAATTTTAGAAACCAATCATGAGTTTTAGCCAAGTCATATCAGTTTCTGTATCAAAAATCGCCTTTTTTGTTAATTTTGGAATGCATAGAGGAAAAAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTTCCTTTGTAAGGTTCCAAAAATTGGTAACTATCAAAGCTACATGAAACTTGAAATTCACTACATGAAACATTCGCTACATGAAACTTGAAATTCGTTGCATTTTTTGGAATTGTATGACATTTCATTTTTGAGGCATGTTGTCGAAAAACAAAATGATTTATTTTCGAGGGTTTTCACATTTTTTCCATTTATTCGAGAGTTTATAATCCAACAAATTTCAGGTTCTGAAACGTCCTAGAAGATTAGAAAATTGTTTTTGAAGATCGCTGTTTTGCACTGAAACCGGAATTTTTTAAACTGAAACGGATATAATTTGGCTGAAACTGACGTTAAGTTCTGAAGTTTTCAAATGTGCCTAGATGGGTTGTCCTTGACCTATCCTGAAAATTTCATCAAAATCTGGGT</canonical>
            <polymorphic>TTTTTCAATTTTCTTTTCCCTGGTTTATCATTTTCAGTAAGCTTAGTTAGACTAATCCCCAATTTTTTGCACCGGAATCCGATGAACTTTGAAACAAAACACGATATGGGCACGTATATTCTCTTTTATCCTCTGTTTTCTTTGTGTTCCTTATAAGTGAGCGACTTCCATTTTTAAGTGTAAAACGAGAGAATCTCAACACCTCGCTAACCCAGATTTTGATGAAAATTTAGGATGAGAATTATCTTTCTAGACAACTCCAAAAATTTTAGAAACCAATCATGAGTTTTAGCCAAGTCATATCAGTTTCTGTATCAAAAATCGCCTTTTTTGTTAATTTTGGAATGCATAGAGGAAAAAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTKTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTTCCTTTGTAAGGTTCCAAAAATTGGTAACTATCAAAGCTACATGAAACTTGAAATTCACTACATGAAACATTCGCTACATGAAACTTGAAATTCGTTGCATTTTTTGGAATTGTATGACATTTCATTTTTGAGGCATGTTGTCGAAAAACAAAATGATTTATTTTCGAGGGTTTTCACATTTTTTCCATTTATTCGAGAGTTTATAATCCAACAAATTTCAGGTTCTGAAACGTCCTAGAAGATTAGAAAATTGTTTTTGAAGATCGCTGTTTTGCACTGAAACCGGAATTTTTTAAACTGAAACGGATATAATTTGGCTGAAACTGACGTTAAGTTCTGAAGTTTTCAAATGTGCCTAGATGGGTTGTCCTTGACCTATCCTGAAAATTTCATCAAAATCTGGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGGAAAAACCTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTACAAAGGAAACCTCAACAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTTCCTTTGTAAG</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTKTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTTCCTTTGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28814</snp_id>
        <super_contig>c004001504.Contig1</super_contig>
        <contig_pos>299239</contig_pos>
        <strand>+</strand>
        <context>TAACTCGGCT[A/G]AAACTGTCGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCT</left_flank>
        <right_flank>AAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTTCCTTTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATCCCCAATTTTTTGCACCGGAATCCGATGAACTTTGAAACAAAACACGATATGGGCACGTATATTCTCTTTTATCCTCTGTTTTCTTTGTGTTCCTTATAAGTGAGCGACTTCCATTTTTAAGTGTAAAACGAGAGAATCTCAACACCTCGCTAACCCAGATTTTGATGAAAATTTAGGATGAGAATTATCTTTCTAGACAACTCCAAAAATTTTAGAAACCAATCATGAGTTTTAGCCAAGTCATATCAGTTTCTGTATCAAAAATCGCCTTTTTTGTTAATTTTGGAATGCATAGAGGAAAAAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTTCCTTTGTAAGGTTCCAAAAATTGGTAACTATCAAAGCTACATGAAACTTGAAATTCACTACATGAAACATTCGCTACATGAAACTTGAAATTCGTTGCATTTTTTGGAATTGTATGACATTTCATTTTTGAGGCATGTTGTCGAAAAACAAAATGATTTATTTTCGAGGGTTTTCACATTTTTTCCATTTATTCGAGAGTTTATAATCCAACAAATTTCAGGTTCTGAAACGTCCTAGAAGATTAGAAAATTGTTTTTGAAGATCGCTGTTTTGCACTGAAACCGGAATTTTTTAAACTGAAACGGATATAATTTGGCTGAAACTGACGTTAAGTTCTGAAGTTTTCAAATGTGCCTAGATGGGTTGTCCTTGACCTATCCTGAAAATTTCATCAAAATCTGGGTTTATAAGGTGTTGAGGTTTCCTTGTGAGGCTCACAAATGTGATGACCATGAG</canonical>
            <polymorphic>TAATCCCCAATTTTTTGCACCGGAATCCGATGAACTTTGAAACAAAACACGATATGGGCACGTATATTCTCTTTTATCCTCTGTTTTCTTTGTGTTCCTTATAAGTGAGCGACTTCCATTTTTAAGTGTAAAACGAGAGAATCTCAACACCTCGCTAACCCAGATTTTGATGAAAATTTAGGATGAGAATTATCTTTCTAGACAACTCCAAAAATTTTAGAAACCAATCATGAGTTTTAGCCAAGTCATATCAGTTTCTGTATCAAAAATCGCCTTTTTTGTTAATTTTGGAATGCATAGAGGAAAAAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTRAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTTCCTTTGTAAGGTTCCAAAAATTGGTAACTATCAAAGCTACATGAAACTTGAAATTCACTACATGAAACATTCGCTACATGAAACTTGAAATTCGTTGCATTTTTTGGAATTGTATGACATTTCATTTTTGAGGCATGTTGTCGAAAAACAAAATGATTTATTTTCGAGGGTTTTCACATTTTTTCCATTTATTCGAGAGTTTATAATCCAACAAATTTCAGGTTCTGAAACGTCCTAGAAGATTAGAAAATTGTTTTTGAAGATCGCTGTTTTGCACTGAAACCGGAATTTTTTAAACTGAAACGGATATAATTTGGCTGAAACTGACGTTAAGTTCTGAAGTTTTCAAATGTGCCTAGATGGGTTGTCCTTGACCTATCCTGAAAATTTCATCAAAATCTGGGTTTATAAGGTGTTGAGGTTTCCTTGTGAGGCTCACAAATGTGATGACCATGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGGAAAAACCTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTACAAAGGAAACCTCAACAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTGAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTTCCTTTGTAAG</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGGAAAAACCTCAAAAAAGGATTTTTTTTTCGAGGACATGCCTCAAATGAGAAATTTCATCCAATCTGAGCAGAATACTACACATTTCATGTTTTGAAACGCCCAAGAAGTTGAGAAAATTGTCTTTGAAAATCGCTGTTTTGCATTGGAACCACCATTTTTGATACTGAAATTGTATATAACTCGGCTRAAACTGTCGGGCAAATTCTAAAATTTTCAAGGTGTTGAGGTTTCCTTTGTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28815</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>9097</contig_pos>
        <strand>+</strand>
        <context>GGTTCCATAG[C/T]TGATTCTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACAGTATCGCCGAAGAAATCGAGAAAGTAATTATGAATAGGTTCCATAG</left_flank>
        <right_flank>TGATTCTTTGTTACTCGGGTGACAATAAGCCTCAGGATCTTGATATTGGT</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGCATCAATATGTTTCACTCCATTTTCATTCAGAAGTTCGTTTGGGAGGTTGTTAAACTCTATTGCTATTTTCAAGTATTCCAACTTCTGAATTGTTCTCCGGTTCTCGATCTATTCATAAACTCTATCAGATCCAGAGTGTTCCTATCATAGCATCTTAAAAATGCCTGTCTCCCTCGAAAATGACGTAAAAAGGCAGGAACAGTATTATTGTTTATTATGAGGGTAATCGATTCTACCTGCCAGAATTCGGACTCCGGACAGAATAGCTCTGGTTTAACCAACTCCATACTTATATGTTTCAAAACAGGAGACGAGGCAAGATATTCTTCAATGTCTTTGATGTCTATAGTTCCTTCTACGTTATCAGCCCAAAAAGAAAGACACAATGATACTTTTGGAAGATGTGGAATGAATTCCTTGTAATGTCCCACATATTGATACTCTACAGTATCGCCGAAGAAATCGAGAAAGTAATTATGAATAGGTTCCATAGTTGATTCTTTGTTACTCGGGTGACAATAAGCCTCAGGATCTTGATATTGGTTGGATAATCTGAAATAATGTTATGTTTCCAATTAATTACTGTTTCTCACTCACCGAAAATTCATAATTTTTCCAGATACGTTCAATTGAAAATAGTCATTTTTTGTTTCCTCGCGGCGCTCAGTAAATTCCATGATAGTATCCTACTCGAGCGTGAAGGGAATATAAACCTTCCGTCTACCTCTCAGACCAAAGCTAGGATCTGAATACACAATATAACCGATGCTTTTGAACCTCTTAATTTGAGACGATTTGATCAGCTTTTTCATATTTTTGGAGACAAACGACAACCAAAATAAATCCGAAATTTCAAGGTTGTCAAGAATCTCCTTTTGGACCACATACGGAAAAATCGTTAGTTTCATTGTTTGTAGTTCTGAAAATGTTGAACAGATTATAGAAGAAGAAGAATGATGATGCGGAAAACGACAAACGCTTGGAATAGATAATG</canonical>
            <polymorphic>AATTGCATCAATATGTTTCACTCCATTTTCATTCAGAAGTTCGTTTGGGAGGTTGTTAAACTCTATTGCTATTTTCAAGTATTCCAACTTCTGAATTGTTCTCCGGTTCTCGATCTATTCATAAACTCTATCAGATCCAGAGTGTTCCTATCATAGCATCTTAAAAATGCCTGTCTCCCTCGAAAATGACGTAAAAAGGCAGGAACAGTATTATTGTTTATTATGAGGGTAATCGATTCTACCTGCCAGAATTCGGACTCCGGACAGAATAGCTCTGGTTTAACCAACTCCATACTTATATGTTTCAAAACAGGAGACGAGGCAAGATATTCTTCAATGTCTTTGATGTCTATAGTTCCTTCTACGTTATCAGCCCAAAAAGAAAGACACAATGATACTTTTGGAAGATGTGGAATGAATTCCTTGTAATGTCCCACATATTGATACTCTACAGTATCGCCGAAGAAATCGAGAAAGTAATTATGAATAGGTTCCATAGYTGATTCTTTGTTACTCGGGTGACAATAAGCCTCAGGATCTTGATATTGGTTGGATAATCTGAAATAATGTTATGTTTCCAATTAATTACTGTTTCTCACTCACCGAAAATTCATAATTTTTCCAGATACGTTCAATTGAAAATAGTCATTTTTTGTTTCCTCGCGGCGCTCAGTAAATTCCATGATAGTATCCTACTCGAGCGTGAAGGGAATATAAACCTTCCGTCTACCTCTCAGACCAAAGCTAGGATCTGAATACACAATATAACCGATGCTTTTGAACCTCTTAATTTGAGACGATTTGATCAGCTTTTTCATATTTTTGGAGACAAACGACAACCAAAATAAATCCGAAATTTCAAGGTTGTCAAGAATCTCCTTTTGGACCACATACGGAAAAATCGTTAGTTTCATTGTTTGTAGTTCTGAAAATGTTGAACAGATTATAGAAGAAGAAGAATGATGATGCGGAAAACGACAAACGCTTGGAATAGATAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGCAAGATATTCTTCAATGT</pcr_primer_p1>
		<pcr_primer_p2>TTTCAGATTATCCAACCAATATC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAGGCAAGATATTCTTCAATGTCTTTGATGTCTATAGTTCCTTCTACGTTATCAGCCCAAAAAGAAAGACACAATGATACTTTTGGAAGATGTGGAATGAATTCCTTGTAATGTCCCACATATTGATACTCTACAGTATCGCCGAAGAAATCGAGAAAGTAATTATGAATAGGTTCCATAGTTGATTCTTTGTTACTCGGGTGACAATAAGCCTCAGGATCTTGATATTGGTTGGATAATCTGAAA</canonical_amplicon>
		<polymorphic_amplicon>GAGGCAAGATATTCTTCAATGTCTTTGATGTCTATAGTTCCTTCTACGTTATCAGCCCAAAAAGAAAGACACAATGATACTTTTGGAAGATGTGGAATGAATTCCTTGTAATGTCCCACATATTGATACTCTACAGTATCGCCGAAGAAATCGAGAAAGTAATTATGAATAGGTTCCATAGYTGATTCTTTGTTACTCGGGTGACAATAAGCCTCAGGATCTTGATATTGGTTGGATAATCTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28816</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>9109</contig_pos>
        <strand>+</strand>
        <context>GATTCTTTGT[C/T]ACTCGGGTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAGAAATCGAGAAAGTAATTATGAATAGGTTCCATAGTTGATTCTTTGT</left_flank>
        <right_flank>ACTCGGGTGACAATAAGCCTCAGGATCTTGATATTGGTTGGATAATCTGA</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTTTCACTCCATTTTCATTCAGAAGTTCGTTTGGGAGGTTGTTAAACTCTATTGCTATTTTCAAGTATTCCAACTTCTGAATTGTTCTCCGGTTCTCGATCTATTCATAAACTCTATCAGATCCAGAGTGTTCCTATCATAGCATCTTAAAAATGCCTGTCTCCCTCGAAAATGACGTAAAAAGGCAGGAACAGTATTATTGTTTATTATGAGGGTAATCGATTCTACCTGCCAGAATTCGGACTCCGGACAGAATAGCTCTGGTTTAACCAACTCCATACTTATATGTTTCAAAACAGGAGACGAGGCAAGATATTCTTCAATGTCTTTGATGTCTATAGTTCCTTCTACGTTATCAGCCCAAAAAGAAAGACACAATGATACTTTTGGAAGATGTGGAATGAATTCCTTGTAATGTCCCACATATTGATACTCTACAGTATCGCCGAAGAAATCGAGAAAGTAATTATGAATAGGTTCCATAGTTGATTCTTTGTTACTCGGGTGACAATAAGCCTCAGGATCTTGATATTGGTTGGATAATCTGAAATAATGTTATGTTTCCAATTAATTACTGTTTCTCACTCACCGAAAATTCATAATTTTTCCAGATACGTTCAATTGAAAATAGTCATTTTTTGTTTCCTCGCGGCGCTCAGTAAATTCCATGATAGTATCCTACTCGAGCGTGAAGGGAATATAAACCTTCCGTCTACCTCTCAGACCAAAGCTAGGATCTGAATACACAATATAACCGATGCTTTTGAACCTCTTAATTTGAGACGATTTGATCAGCTTTTTCATATTTTTGGAGACAAACGACAACCAAAATAAATCCGAAATTTCAAGGTTGTCAAGAATCTCCTTTTGGACCACATACGGAAAAATCGTTAGTTTCATTGTTTGTAGTTCTGAAAATGTTGAACAGATTATAGAAGAAGAAGAATGATGATGCGGAAAACGACAAACGCTTGGAATAGATAATGAATAACAAAAGA</canonical>
            <polymorphic>ATGTTTCACTCCATTTTCATTCAGAAGTTCGTTTGGGAGGTTGTTAAACTCTATTGCTATTTTCAAGTATTCCAACTTCTGAATTGTTCTCCGGTTCTCGATCTATTCATAAACTCTATCAGATCCAGAGTGTTCCTATCATAGCATCTTAAAAATGCCTGTCTCCCTCGAAAATGACGTAAAAAGGCAGGAACAGTATTATTGTTTATTATGAGGGTAATCGATTCTACCTGCCAGAATTCGGACTCCGGACAGAATAGCTCTGGTTTAACCAACTCCATACTTATATGTTTCAAAACAGGAGACGAGGCAAGATATTCTTCAATGTCTTTGATGTCTATAGTTCCTTCTACGTTATCAGCCCAAAAAGAAAGACACAATGATACTTTTGGAAGATGTGGAATGAATTCCTTGTAATGTCCCACATATTGATACTCTACAGTATCGCCGAAGAAATCGAGAAAGTAATTATGAATAGGTTCCATAGTTGATTCTTTGTYACTCGGGTGACAATAAGCCTCAGGATCTTGATATTGGTTGGATAATCTGAAATAATGTTATGTTTCCAATTAATTACTGTTTCTCACTCACCGAAAATTCATAATTTTTCCAGATACGTTCAATTGAAAATAGTCATTTTTTGTTTCCTCGCGGCGCTCAGTAAATTCCATGATAGTATCCTACTCGAGCGTGAAGGGAATATAAACCTTCCGTCTACCTCTCAGACCAAAGCTAGGATCTGAATACACAATATAACCGATGCTTTTGAACCTCTTAATTTGAGACGATTTGATCAGCTTTTTCATATTTTTGGAGACAAACGACAACCAAAATAAATCCGAAATTTCAAGGTTGTCAAGAATCTCCTTTTGGACCACATACGGAAAAATCGTTAGTTTCATTGTTTGTAGTTCTGAAAATGTTGAACAGATTATAGAAGAAGAAGAATGATGATGCGGAAAACGACAAACGCTTGGAATAGATAATGAATAACAAAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAATGATACTTTTGGAAGATGT</pcr_primer_p1>
		<pcr_primer_p2>AATTGAACGTATCTGGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAATGATACTTTTGGAAGATGTGGAATGAATTCCTTGTAATGTCCCACATATTGATACTCTACAGTATCGCCGAAGAAATCGAGAAAGTAATTATGAATAGGTTCCATAGTTGATTCTTTGTTACTCGGGTGACAATAAGCCTCAGGATCTTGATATTGGTTGGATAATCTGAAATAATGTTATGTTTCCAATTAATTACTGTTTCTCACTCACCGAAAATTCATAATTTTTCCAGATACGTTCAATT</canonical_amplicon>
		<polymorphic_amplicon>ACAATGATACTTTTGGAAGATGTGGAATGAATTCCTTGTAATGTCCCACATATTGATACTCTACAGTATCGCCGAAGAAATCGAGAAAGTAATTATGAATAGGTTCCATAGTTGATTCTTTGTYACTCGGGTGACAATAAGCCTCAGGATCTTGATATTGGTTGGATAATCTGAAATAATGTTATGTTTCCAATTAATTACTGTTTCTCACTCACCGAAAATTCATAATTTTTCCAGATACGTTCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28817</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>9125</contig_pos>
        <strand>+</strand>
        <context>GGTGACAATA[A/T]GCCTCAGGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAATTATGAATAGGTTCCATAGTTGATTCTTTGTTACTCGGGTGACAATA</left_flank>
        <right_flank>GCCTCAGGATCTTGATATTGGTTGGATAATCTGAAATAATGTTATGTTTC</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATTCAGAAGTTCGTTTGGGAGGTTGTTAAACTCTATTGCTATTTTCAAGTATTCCAACTTCTGAATTGTTCTCCGGTTCTCGATCTATTCATAAACTCTATCAGATCCAGAGTGTTCCTATCATAGCATCTTAAAAATGCCTGTCTCCCTCGAAAATGACGTAAAAAGGCAGGAACAGTATTATTGTTTATTATGAGGGTAATCGATTCTACCTGCCAGAATTCGGACTCCGGACAGAATAGCTCTGGTTTAACCAACTCCATACTTATATGTTTCAAAACAGGAGACGAGGCAAGATATTCTTCAATGTCTTTGATGTCTATAGTTCCTTCTACGTTATCAGCCCAAAAAGAAAGACACAATGATACTTTTGGAAGATGTGGAATGAATTCCTTGTAATGTCCCACATATTGATACTCTACAGTATCGCCGAAGAAATCGAGAAAGTAATTATGAATAGGTTCCATAGTTGATTCTTTGTTACTCGGGTGACAATAAGCCTCAGGATCTTGATATTGGTTGGATAATCTGAAATAATGTTATGTTTCCAATTAATTACTGTTTCTCACTCACCGAAAATTCATAATTTTTCCAGATACGTTCAATTGAAAATAGTCATTTTTTGTTTCCTCGCGGCGCTCAGTAAATTCCATGATAGTATCCTACTCGAGCGTGAAGGGAATATAAACCTTCCGTCTACCTCTCAGACCAAAGCTAGGATCTGAATACACAATATAACCGATGCTTTTGAACCTCTTAATTTGAGACGATTTGATCAGCTTTTTCATATTTTTGGAGACAAACGACAACCAAAATAAATCCGAAATTTCAAGGTTGTCAAGAATCTCCTTTTGGACCACATACGGAAAAATCGTTAGTTTCATTGTTTGTAGTTCTGAAAATGTTGAACAGATTATAGAAGAAGAAGAATGATGATGCGGAAAACGACAAACGCTTGGAATAGATAATGAATAACAAAAGAAGGAGCATCTGAATAC</canonical>
            <polymorphic>TCATTCAGAAGTTCGTTTGGGAGGTTGTTAAACTCTATTGCTATTTTCAAGTATTCCAACTTCTGAATTGTTCTCCGGTTCTCGATCTATTCATAAACTCTATCAGATCCAGAGTGTTCCTATCATAGCATCTTAAAAATGCCTGTCTCCCTCGAAAATGACGTAAAAAGGCAGGAACAGTATTATTGTTTATTATGAGGGTAATCGATTCTACCTGCCAGAATTCGGACTCCGGACAGAATAGCTCTGGTTTAACCAACTCCATACTTATATGTTTCAAAACAGGAGACGAGGCAAGATATTCTTCAATGTCTTTGATGTCTATAGTTCCTTCTACGTTATCAGCCCAAAAAGAAAGACACAATGATACTTTTGGAAGATGTGGAATGAATTCCTTGTAATGTCCCACATATTGATACTCTACAGTATCGCCGAAGAAATCGAGAAAGTAATTATGAATAGGTTCCATAGTTGATTCTTTGTTACTCGGGTGACAATAWGCCTCAGGATCTTGATATTGGTTGGATAATCTGAAATAATGTTATGTTTCCAATTAATTACTGTTTCTCACTCACCGAAAATTCATAATTTTTCCAGATACGTTCAATTGAAAATAGTCATTTTTTGTTTCCTCGCGGCGCTCAGTAAATTCCATGATAGTATCCTACTCGAGCGTGAAGGGAATATAAACCTTCCGTCTACCTCTCAGACCAAAGCTAGGATCTGAATACACAATATAACCGATGCTTTTGAACCTCTTAATTTGAGACGATTTGATCAGCTTTTTCATATTTTTGGAGACAAACGACAACCAAAATAAATCCGAAATTTCAAGGTTGTCAAGAATCTCCTTTTGGACCACATACGGAAAAATCGTTAGTTTCATTGTTTGTAGTTCTGAAAATGTTGAACAGATTATAGAAGAAGAAGAATGATGATGCGGAAAACGACAAACGCTTGGAATAGATAATGAATAACAAAAGAAGGAGCATCTGAATAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>244 219 215 156 101 65</canonical_bands>
                <polymorphic_bands>371 244 219 101 65</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAATGATACTTTTGGAAGATGT</pcr_primer_p1>
		<pcr_primer_p2>AATTGAACGTATCTGGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAATGATACTTTTGGAAGATGTGGAATGAATTCCTTGTAATGTCCCACATATTGATACTCTACAGTATCGCCGAAGAAATCGAGAAAGTAATTATGAATAGGTTCCATAGTTGATTCTTTGTTACTCGGGTGACAATAAGCCTCAGGATCTTGATATTGGTTGGATAATCTGAAATAATGTTATGTTTCCAATTAATTACTGTTTCTCACTCACCGAAAATTCATAATTTTTCCAGATACGTTCAATT</canonical_amplicon>
		<polymorphic_amplicon>ACAATGATACTTTTGGAAGATGTGGAATGAATTCCTTGTAATGTCCCACATATTGATACTCTACAGTATCGCCGAAGAAATCGAGAAAGTAATTATGAATAGGTTCCATAGTTGATTCTTTGTTACTCGGGTGACAATAWGCCTCAGGATCTTGATATTGGTTGGATAATCTGAAATAATGTTATGTTTCCAATTAATTACTGTTTCTCACTCACCGAAAATTCATAATTTTTCCAGATACGTTCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28818</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>9543</contig_pos>
        <strand>+</strand>
        <context>TGAACAGATT[A/G]TAGAAGAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAAATCGTTAGTTTCATTGTTTGTAGTTCTGAAAATGTTGAACAGATT</left_flank>
        <right_flank>TAGAAGAAGAAGAATGATGATGCGGAAAACGACAAACGCTTGGAATAGAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTACAGTATCGCCGAAGAAATCGAGAAAGTAATTATGAATAGGTTCCATAGTTGATTCTTTGTTACTCGGGTGACAATAAGCCTCAGGATCTTGATATTGGTTGGATAATCTGAAATAATGTTATGTTTCCAATTAATTACTGTTTCTCACTCACCGAAAATTCATAATTTTTCCAGATACGTTCAATTGAAAATAGTCATTTTTTGTTTCCTCGCGGCGCTCAGTAAATTCCATGATAGTATCCTACTCGAGCGTGAAGGGAATATAAACCTTCCGTCTACCTCTCAGACCAAAGCTAGGATCTGAATACACAATATAACCGATGCTTTTGAACCTCTTAATTTGAGACGATTTGATCAGCTTTTTCATATTTTTGGAGACAAACGACAACCAAAATAAATCCGAAATTTCAAGGTTGTCAAGAATCTCCTTTTGGACCACATACGGAAAAATCGTTAGTTTCATTGTTTGTAGTTCTGAAAATGTTGAACAGATTATAGAAGAAGAAGAATGATGATGCGGAAAACGACAAACGCTTGGAATAGATAATGAATAACAAAAGAAGGAGCATCTGAATACGTGGCAGATGACCCAAAAGACACAGAAGAAGATCTTACGATGATGAATGTATGACCTTCACTCATTCACACAGGGACCACCCCATCAGGGACCACCCCTCGATTAAAGAATAATGAGAGTTTTCTCTAAGGAAGGTTCAAAAATCAAATGGGTTCATTGTACATGAATATGCAACCGTTATAAGAATGTGCAAACTCTAAAACGATGAAAACTTCAAATTCACATTGGTGCTGAAATTTCTCTTATGTTAGTTTCCATTATCTGAAAACCTCAGAATCCTGAAATCAGAATCCTTTCAGTACAAAATTTGAAAAATAAAAATGTTCACCGCTGAGAAAAAGGCTTGCAGCTCATATTTTTCACTGGGGAGAGCGTGCAAAAGTGAAAAAAGAAACTCTAAATCTACGAAACTCGCCTT</canonical>
            <polymorphic>CTCTACAGTATCGCCGAAGAAATCGAGAAAGTAATTATGAATAGGTTCCATAGTTGATTCTTTGTTACTCGGGTGACAATAAGCCTCAGGATCTTGATATTGGTTGGATAATCTGAAATAATGTTATGTTTCCAATTAATTACTGTTTCTCACTCACCGAAAATTCATAATTTTTCCAGATACGTTCAATTGAAAATAGTCATTTTTTGTTTCCTCGCGGCGCTCAGTAAATTCCATGATAGTATCCTACTCGAGCGTGAAGGGAATATAAACCTTCCGTCTACCTCTCAGACCAAAGCTAGGATCTGAATACACAATATAACCGATGCTTTTGAACCTCTTAATTTGAGACGATTTGATCAGCTTTTTCATATTTTTGGAGACAAACGACAACCAAAATAAATCCGAAATTTCAAGGTTGTCAAGAATCTCCTTTTGGACCACATACGGAAAAATCGTTAGTTTCATTGTTTGTAGTTCTGAAAATGTTGAACAGATTRTAGAAGAAGAAGAATGATGATGCGGAAAACGACAAACGCTTGGAATAGATAATGAATAACAAAAGAAGGAGCATCTGAATACGTGGCAGATGACCCAAAAGACACAGAAGAAGATCTTACGATGATGAATGTATGACCTTCACTCATTCACACAGGGACCACCCCATCAGGGACCACCCCTCGATTAAAGAATAATGAGAGTTTTCTCTAAGGAAGGTTCAAAAATCAAATGGGTTCATTGTACATGAATATGCAACCGTTATAAGAATGTGCAAACTCTAAAACGATGAAAACTTCAAATTCACATTGGTGCTGAAATTTCTCTTATGTTAGTTTCCATTATCTGAAAACCTCAGAATCCTGAAATCAGAATCCTTTCAGTACAAAATTTGAAAAATAAAAATGTTCACCGCTGAGAAAAAGGCTTGCAGCTCATATTTTTCACTGGGGAGAGCGTGCAAAAGTGAAAAAAGAAACTCTAAATCTACGAAACTCGCCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGCTTTTGAACCTCTTAATTT</pcr_primer_p1>
		<pcr_primer_p2>ATGCTCCTTCTTTTGTTATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATGCTTTTGAACCTCTTAATTTGAGACGATTTGATCAGCTTTTTCATATTTTTGGAGACAAACGACAACCAAAATAAATCCGAAATTTCAAGGTTGTCAAGAATCTCCTTTTGGACCACATACGGAAAAATCGTTAGTTTCATTGTTTGTAGTTCTGAAAATGTTGAACAGATTATAGAAGAAGAAGAATGATGATGCGGAAAACGACAAACGCTTGGAATAGATAATGAATAACAAAAGAAGGAGCAT</canonical_amplicon>
		<polymorphic_amplicon>GATGCTTTTGAACCTCTTAATTTGAGACGATTTGATCAGCTTTTTCATATTTTTGGAGACAAACGACAACCAAAATAAATCCGAAATTTCAAGGTTGTCAAGAATCTCCTTTTGGACCACATACGGAAAAATCGTTAGTTTCATTGTTTGTAGTTCTGAAAATGTTGAACAGATTRTAGAAGAAGAAGAATGATGATGCGGAAAACGACAAACGCTTGGAATAGATAATGAATAACAAAAGAAGGAGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28819</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>38705</contig_pos>
        <strand>+</strand>
        <context>TATTGAGYCC[C/T]TTTTTTCCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAACAAAGTTTCGTTTTGCAGGTCTCAAAAATATGGTTATATTGAGTCC</left_flank>
        <right_flank>TTTTTTCCAGCCACCGTTTTATTATTTCTAAGACAATGAGGTATAGAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTGAAAGAAGAGAAACAGAAGAAATCAAATAATCAAGTTCTCTTTATGACTCTCTTTTCGACGGACTCTGGTAGTTCAACTCTTTCTTCCACTCCGCGTGGTCATGTCCGTCCGGACACATCGTCCATCAGCATCGGACGACGTGTTAGCAGTCAGAGTGGGCGCCACACTCCTCCTCTGGGGACGCCGACCATAATCCAGTCGAAGAGTCGCTGCTGGGTTCGGAAAGGAAGGAGCAGTCGAATGAGACGAACATTCCACACTGACAAAACACATCCGTCTTTGTGTCGCCGACAACTTTCCTCACAGGCCTTGCTTCATTTTTTTTTTTGAGTTTTTTTCTAGTCTAGTCTGATTGTTTAGCAGTATCGGGTTATTGAGTTCCACTCGACTTTTTAGGATTCCAGGATGCCATCGTCGCTTTTTGACAAAACATTATGGCACACCAACAAAGTTTCGTTTTGCAGGTCTCAAAAATATGGTTATATTGAGTCCCTTTTTTCCAGCCACCGTTTTATTATTTCTAAGACAATGAGGTATAGAAATGCGATGGTTCCAAGAAGTCGTTTGTAATTCAAATTTCTTCGTTTTTGTTTTTTTCTAGTATTCAAAAGAGATCTCGAGATTTTTCTGGGAATTCAATCGTTATACGCGTTATAAGCCAAATAATACATTGATGCCAAGAATGTAGTTGTCAAGAAAACCGTTTTCCACAGATCGGGGTCTTCTTCCGCAGGAGCTCTCCGTCAGCTTTCCCGGCACGATGACGTGATTCAGCTCGTCATCATTATCGCATTCTTTCTTCTTTCTTCCTCTTCTCTTCATTTGTATCTTCTGTTATATTTTTTGCGACATTTTGTAAGTGTGAAAAGAAATATTTTGTGGATTCTTTCTTTCGCGGTGGCCTGAAAAAAGGATAGAAAGTAGTTTCTGGACGACCCGAAGAAACCGCGCCGCCCTGTGAAGAACAAGAGCAGACACTTCTTTTTTGCTGCT</canonical>
            <polymorphic>AATTTTGAAAGAAGAGAAACAGAAGAAATCAAATAATCAAGTTCTCTTTATGACTCTCTTTTCGACGGACTCTGGTAGTTCAACTCTTTCTTCCACTCCGCGTGGTCATGTCCGTCCGGACACATCGTCCATCAGCATCGGACGACGTGTTAGCAGTCAGAGTGGGCGCCACACTCCTCCTCTGGGGACGCCGACCATAATCCAGTCGAAGAGTCGCTGCTGGGTTCGGAAAGGAAGGAGCAGTCGAATGAGACGAACATTCCACACTGACAAAACACATCCGTCTTTGTGTCGCCGACAACTTTCCTCACAGGCCTTGCTTCATTTTTTTTTTTGAGTTTTTTTCTAGTCTAGTCTGATTGTTTAGCAGTATCGGGTTATTGAGTTCCACTCGACTTTTTAGGATTCCAGGATGCCATCGTCGCTTTTTGACAAAACATTATGGCACACCAACAAAGTTTCGTTTTGCAGGTCTCAAAAATATGGTTATATTGAGTCCYTTTTTTCCAGCCACCGTTTTATTATTTCTAAGACAATGAGGTATAGAAATGCGATGGTTCCAAGAAGTCGTTTGTAATTCAAATTTCTTCGTTTTTGTTTTTTTCTAGTATTCAAAAGAGATCTCGAGATTTTTCTGGGAATTCAATCGTTATACGCGTTATAAGCCAAATAATACATTGATGCCAAGAATGTAGTTGTCAAGAAAACCGTTTTCCACAGATCGGGGTCTTCTTCCGCAGGAGCTCTCCGTCAGCTTTCCCGGCACGATGACGTGATTCAGCTCGTCATCATTATCGCATTCTTTCTTCTTTCTTCCTCTTCTCTTCATTTGTATCTTCTGTTATATTTTTTGCGACATTTTGTAAGTGTGAAAAGAAATATTTTGTGGATTCTTTCTTTCGCGGTGGCCTGAAAAAAGGATAGAAAGTAGTTTCTGGACGACCCGAAGAAACCGCGCCGCCCTGTGAAGAACAAGAGCAGACACTTCTTTTTTGCTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCTGATTGTTTAGCAGTATCG</pcr_primer_p1>
		<pcr_primer_p2>AAACAAAAACGAAGAAATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGTCTGATTGTTTAGCAGTATCGGGTTATTGAGTTCCACTCGACTTTTTAGGATTCCAGGATGCCATCGTCGCTTTTTGACAAAACATTATGGCACACCAACAAAGTTTCGTTTTGCAGGTCTCAAAAATATGGTTATATTGAGTCCCTTTTTTCCAGCCACCGTTTTATTATTTCTAAGACAATGAGGTATAGAAATGCGATGGTTCCAAGAAGTCGTTTGTAATTCAAATTTCTTCGTTTTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>AGTCTGATTGTTTAGCAGTATCGGGTTATTGAGTTCCACTCGACTTTTTAGGATTCCAGGATGCCATCGTCGCTTTTTGACAAAACATTATGGCACACCAACAAAGTTTCGTTTTGCAGGTCTCAAAAATATGGTTATATTGAGTCCYTTTTTTCCAGCCACCGTTTTATTATTTCTAAGACAATGAGGTATAGAAATGCGATGGTTCCAAGAAGTCGTTTGTAATTCAAATTTCTTCGTTTTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28820</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>93844</contig_pos>
        <strand>+</strand>
        <context>TCACAAGGAA[A/T]AAGCTGGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGGAGAAGAGAGAGTTTGGGGTTGTTTTTTGAAAAATTATCACAAGGAA</left_flank>
        <right_flank>AAGCTGGAAAAAATACGGAAGTTGGTCCGAGAACTCTAAAGAATCCCTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTGCAACACAGGCCTTTCAGAGCTCAGAAAATTCAAGGGATATTGACCCTAGGTTGTCTCGGGGGTTTCCATCACACAATCTCTTCTGAGTATCTAGGAAGTACCCCTCCCTGCCAACCATCCTTACGATCTCAGCCGACTCAGAAGCGATTGTGTGATTCTCACCGACAGACCGCTCAAGATAGAGAGATTGTATTTGATAACTACTTGGGACAGAGCAAGATATACTTTTCTTTTCTTTTTCAGTAAATTCTTCCTGTACAATATGTGATATTAATTAGAAGTTTATATTGGTCTTGTCATAAATGTGCAGTGTAAATATTAAAAATACTATTTAAAAGAATAAAATTCAAATTAATAATAATGCGAAACGGAGAAAGAAGAAGTACCCTTTTGAACAGTGAATTGAGACAGAAAAACTGAAATGAAAAGAAGGAAAAAGAGGAGGAGAAGAGAGAGTTTGGGGTTGTTTTTTGAAAAATTATCACAAGGAAGAAGCTGGAAAAAATACGGAAGTTGGTCCGAGAACTCTAAAGAATCCCTACAGAAGTTAATTTAAAGAACAAAATAGAGAATGGAAGAGACGAAAAGGGAGAAAATGGAGGAGATTGGGGTAACTGAGTTGATTGATTCTTCCTGCGCCTGATCGTGATGTTTGTGGTGATGCTTGTGGTGGTGGTGGCCAGATCTGAAAAATCGAATTTCCTGTTTTTTGTTGTCTTTTTTGATTAAATTGGTTTCTGGTCCTAGGAATTTCATGTTGTTTTTATGGAACGTCTCGTAAATGCGCTCGAACGGGAATACATGTACTACAGTAATATTAGCGTTGGTCTCGATGCGAAAGCAGGAACTGAAGATTCATCGGAAAAAGCGCGGGAATTTTTTTTTTCGAAAACCCTCCCGGAAAAAAAAACACAGCTTTTGCTTTTTTTTCGTACAAAAAATCGAAGCTGTGTAATGAAAATCTAGTGGCCGTGGCCAAAGGTCCCACAAAG</canonical>
            <polymorphic>ATTTTTTGCAACACAGGCCTTTCAGAGCTCAGAAAATTCAAGGGATATTGACCCTAGGTTGTCTCGGGGGTTTCCATCACACAATCTCTTCTGAGTATCTAGGAAGTACCCCTCCCTGCCAACCATCCTTACGATCTCAGCCGACTCAGAAGCGATTGTGTGATTCTCACCGACAGACCGCTCAAGATAGAGAGATTGTATTTGATAACTACTTGGGACAGAGCAAGATATACTTTTCTTTTCTTTTTCAGTAAATTCTTCCTGTACAATATGTGATATTAATTAGAAGTTTATATTGGTCTTGTCATAAATGTGCAGTGTAAATATTAAAAATACTATTTAAAAGAATAAAATTCAAATTAATAATAATGCGAAACGGAGAAAGAAGAAGTACCCTTTTGAACAGTGAATTGAGACAGAAAAACTGAAATGAAAAGAAGGAAAAAGAGGAGGAGAAGAGAGAGTTTGGGGTTGTTTTTTGAAAAATTATCACAAGGAAWAAGCTGGAAAAAATACGGAAGTTGGTCCGAGAACTCTAAAGAATCCCTACAGAAGTTAATTTAAAGAACAAAATAGAGAATGGAAGAGACGAAAAGGGAGAAAATGGAGGAGATTGGGGTAACTGAGTTGATTGATTCTTCCTGCGCCTGATCGTGATGTTTGTGGTGATGCTTGTGGTGGTGGTGGCCAGATCTGAAAAATCGAATTTCCTGTTTTTTGTTGTCTTTTTTGATTAAATTGGTTTCTGGTCCTAGGAATTTCATGTTGTTTTTATGGAACGTCTCGTAAATGCGCTCGAACGGGAATACATGTACTACAGTAATATTAGCGTTGGTCTCGATGCGAAAGCAGGAACTGAAGATTCATCGGAAAAAGCGCGGGAATTTTTTTTTTCGAAAACCCTCCCGGAAAAAAAAACACAGCTTTTGCTTTTTTTTCGTACAAAAAATCGAAGCTGTGTAATGAAAATCTAGTGGCCGTGGCCAAAGGTCCCACAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAAGAAGTACCCTTTTGAAC</pcr_primer_p1>
		<pcr_primer_p2>ATCAACTCAGTTACCCCAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAGAAGAAGTACCCTTTTGAACAGTGAATTGAGACAGAAAAACTGAAATGAAAAGAAGGAAAAAGAGGAGGAGAAGAGAGAGTTTGGGGTTGTTTTTTGAAAAATTATCACAAGGAAGAAGCTGGAAAAAATACGGAAGTTGGTCCGAGAACTCTAAAGAATCCCTACAGAAGTTAATTTAAAGAACAAAATAGAGAATGGAAGAGACGAAAAGGGAGAAAATGGAGGAGATTGGGGTAACTGAGTTGAT</canonical_amplicon>
		<polymorphic_amplicon>AAAGAAGAAGTACCCTTTTGAACAGTGAATTGAGACAGAAAAACTGAAATGAAAAGAAGGAAAAAGAGGAGGAGAAGAGAGAGTTTGGGGTTGTTTTTTGAAAAATTATCACAAGGAAWAAGCTGGAAAAAATACGGAAGTTGGTCCGAGAACTCTAAAGAATCCCTACAGAAGTTAATTTAAAGAACAAAATAGAGAATGGAAGAGACGAAAAGGGAGAAAATGGAGGAGATTGGGGTAACTGAGTTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28821</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>186408</contig_pos>
        <strand>+</strand>
        <context>TTGATCAGAA[A/G]Aaaagatatc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTATTAGATCCACATAATAATTATCCACATAATAATTTATTGATCAGAA</left_flank>
        <right_flank>AAAAGATATCAACAAGTGGTCAACTAACAAACTATTTTTGAAAACATTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAATAAAAAACTTTCCAAGAGTAAAATAATTTTTTCCCGGAAAAATTCTGAAAATTCAATTGTTTTTAAATTTGGATAACCCGGGCCCCAGACTCGCGGGCCAGGCTCTAATTTTTCAAGTATGGATTTTTTTGAAAAAAAAAGTTCTCAGGCAAAAGACGAATCAGCAATGGTAGTGTCAAAGCATGGAGCAGGTCGAGCCGGATACTTCATTGCGTTATCTGTAGCTGTTTTCCAATTGAACAAAGCCGAAGAGCCATCACTTTATGAAATCGTCAAAGCTCTCCGTGCACAACGTCCAAAGTCTGTGGAGTCATTGACACAGTACGCATCATTATACACATCACTCTTCTATTACATTAAGGTAAAAATTAGGGAGGTTTTAAATTACCGTATTTCCTCTAGCCCACACATATCGTCAACTTTGAGCCCATATGTCTCATTTCCTGTATTAGATCCACATAATAATTATCCACATAATAATTTATTGATCAGAAAAAAAGATATCAACAAGTGGTCAACTAACAAACTATTTTTGAAAACATTATAAACATTTTGTTAGTTGACTTCTACAAGAAATAAGATAATTGAGCTCAAAGTTAAAGTTAGAGATGGCGTTCTATTAGAGTGTATTAGAGTTACACAAAAGTTTTCAGAAGAAAATGGCCAAAGTGGATGTGCATAAGAAAGTGATCCCAAATCCAAGCTGTCCAATTACCAAAAAAGTGATTCAATTAACATCTGTATTCACAAATTCATTGCTTGCTGAAGTGTGTGCGGCTGCTGGAAGATCCACATTGACAGTGATAAAATAGAAGATGGAGATTAAGGGACCCTTAAGTGTTTTGAACTAATGAATGTCTTTTACTTTACTTATTTCTGTTGTTAATGATAATGTGTTAACTTTAGGATTCTTCTGGAACAAATTTAGATTCTGAATTGTTCGATTTTGGAAAAAAACAAAATTCTGATTCTAAGATTCCGAAATGTTTTGATTC</canonical>
            <polymorphic>TCAAATAAAAAACTTTCCAAGAGTAAAATAATTTTTTCCCGGAAAAATTCTGAAAATTCAATTGTTTTTAAATTTGGATAACCCGGGCCCCAGACTCGCGGGCCAGGCTCTAATTTTTCAAGTATGGATTTTTTTGAAAAAAAAAGTTCTCAGGCAAAAGACGAATCAGCAATGGTAGTGTCAAAGCATGGAGCAGGTCGAGCCGGATACTTCATTGCGTTATCTGTAGCTGTTTTCCAATTGAACAAAGCCGAAGAGCCATCACTTTATGAAATCGTCAAAGCTCTCCGTGCACAACGTCCAAAGTCTGTGGAGTCATTGACACAGTACGCATCATTATACACATCACTCTTCTATTACATTAAGGTAAAAATTAGGGAGGTTTTAAATTACCGTATTTCCTCTAGCCCACACATATCGTCAACTTTGAGCCCATATGTCTCATTTCCTGTATTAGATCCACATAATAATTATCCACATAATAATTTATTGATCAGAARAAAAGATATCAACAAGTGGTCAACTAACAAACTATTTTTGAAAACATTATAAACATTTTGTTAGTTGACTTCTACAAGAAATAAGATAATTGAGCTCAAAGTTAAAGTTAGAGATGGCGTTCTATTAGAGTGTATTAGAGTTACACAAAAGTTTTCAGAAGAAAATGGCCAAAGTGGATGTGCATAAGAAAGTGATCCCAAATCCAAGCTGTCCAATTACCAAAAAAGTGATTCAATTAACATCTGTATTCACAAATTCATTGCTTGCTGAAGTGTGTGCGGCTGCTGGAAGATCCACATTGACAGTGATAAAATAGAAGATGGAGATTAAGGGACCCTTAAGTGTTTTGAACTAATGAATGTCTTTTACTTTACTTATTTCTGTTGTTAATGATAATGTGTTAACTTTAGGATTCTTCTGGAACAAATTTAGATTCTGAATTGTTCGATTTTGGAAAAAAACAAAATTCTGATTCTAAGATTCCGAAATGTTTTGATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCATTTCCTGTATTAGATCCAC</pcr_primer_p1>
		<pcr_primer_p2>ACTTTCTTATGCACATCCACTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CTCATTTCCTGTATTAGATCCACATAATAATTATCCACATAATAATTTATTGATCAGAAAAAAAGATATCAACAAGTGGTCAACTAACAAACTATTTTTGAAAACATTATAAACATTTTGTTAGTTGACTTCTACAAGAAATAAGATAATTGAGCTCAAAGTTAAAGTTAGAGATGGCGTTCTATTAGAGTGTATTAGAGTTACACAAAAGTTTTCAGAAGAAAATGGCCAAAGTGGATGTGCATAAGAAAGT</canonical_amplicon>
		<polymorphic_amplicon>CTCATTTCCTGTATTAGATCCACATAATAATTATCCACATAATAATTTATTGATCAGAARAAAAGATATCAACAAGTGGTCAACTAACAAACTATTTTTGAAAACATTATAAACATTTTGTTAGTTGACTTCTACAAGAAATAAGATAATTGAGCTCAAAGTTAAAGTTAGAGATGGCGTTCTATTAGAGTGTATTAGAGTTACACAAAAGTTTTCAGAAGAAAATGGCCAAAGTGGATGTGCATAAGAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28822</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>189950</contig_pos>
        <strand></strand>
        <context>tctgaaattt[A/T]gaattttgaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTAAGAATGTTGGAGGTTCCGAAAGTTAGTCATTTGAAAGTCTGAAATTT</left_flank>
        <right_flank>GAATTTTGAAAATTTCGAAAATCGAAGTATCAAAAATTCAGAAAATCTAG</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAACGATATCGGCGGATTATGGAACTACAAACCGAATCAGACAGATTGTAATTCTTTTGAAAAAAGACTCTAAAATAACAAAGAGATTTCAGTGTCCACAGTTATGAAGTCTACCGTAATCAACTCATCGAAAGAAATGACGGCGTTTTCAGATTTTCCACCAGAGGACACTATGGCTAACTTCATGCACAACACAGAAATGTGTAGATATTTGAAGAATTACGCAAAGAATTTTGAGCTGATGAAGTATATAAAACTAAATCATAGTGTGATTTCAATCGACAGAAATGATGATTATGAGACTACTGGAAAGTGGAAAGTTCGCTTTACTGATGGGTAAGAATTATTTCAGAACATTTTGATTCAGAATTCAAAATTTTGCAAATCTGGGAATTCAAAATGAGAAAGTTCTGAATTTCGAAATTTCAGCAAGTCAGAAAAGGGAAATCTAAGAATGTTGGAGGTTCCGAAAGTTAGTCATTTGAAAGTCTGAAATTTAGAATTTTGAAAATTTCGAAAATCGAAGTATCAAAAATTCAGAAAATCTAGATTCAGAATTTTGCGAATTTTCGAATTCGTGTTTTTTGCTGGAATTCGACATTTCAAAAGCTTACATTTTCGATATCTTACATAGAAATGAAGATATATAAGTTCGAAGTTGATGGTTTGGTTTACGGTAGTAATTTTCAACCAGTCGATTAACGCCCTTTCGGGGCTGGACCTCCTGGCCTCCGGTCGCCCTCCACCATCTCCTTTCTGTCCACCACCCTTTACTGTGGTGAAACCAAGGAACGTCTCCAGAAGACTTCAAAATCAAAATTTCGAAAAACCAAACGTTCGGGCATTAACTAAGACACAATTGTGATCTATCTGTCCAGGTTTCAGCTTGATCGGTCAACTTTGAATGGGTGATAAGGTGCGCTACATACATACGCACATACAGAATCTGGTGAATGTTATTAGAAATGATAGTGAAAGATTGAAAAATGTTATAAATAT</canonical>
            <polymorphic>CGAACGATATCGGCGGATTATGGAACTACAAACCGAATCAGACAGATTGTAATTCTTTTGAAAAAAGACTCTAAAATAACAAAGAGATTTCAGTGTCCACAGTTATGAAGTCTACCGTAATCAACTCATCGAAAGAAATGACGGCGTTTTCAGATTTTCCACCAGAGGACACTATGGCTAACTTCATGCACAACACAGAAATGTGTAGATATTTGAAGAATTACGCAAAGAATTTTGAGCTGATGAAGTATATAAAACTAAATCATAGTGTGATTTCAATCGACAGAAATGATGATTATGAGACTACTGGAAAGTGGAAAGTTCGCTTTACTGATGGGTAAGAATTATTTCAGAACATTTTGATTCAGAATTCAAAATTTTGCAAATCTGGGAATTCAAAATGAGAAAGTTCTGAATTTCGAAATTTCAGCAAGTCAGAAAAGGGAAATCTAAGAATGTTGGAGGTTCCGAAAGTTAGTCATTTGAAAGTCTGAAATTTWGAATTTTGAAAATTTCGAAAATCGAAGTATCAAAAATTCAGAAAATCTAGATTCAGAATTTTGCGAATTTTCGAATTCGTGTTTTTTGCTGGAATTCGACATTTCAAAAGCTTACATTTTCGATATCTTACATAGAAATGAAGATATATAAGTTCGAAGTTGATGGTTTGGTTTACGGTAGTAATTTTCAACCAGTCGATTAACGCCCTTTCGGGGCTGGACCTCCTGGCCTCCGGTCGCCCTCCACCATCTCCTTTCTGTCCACCACCCTTTACTGTGGTGAAACCAAGGAACGTCTCCAGAAGACTTCAAAATCAAAATTTCGAAAAACCAAACGTTCGGGCATTAACTAAGACACAATTGTGATCTATCTGTCCAGGTTTCAGCTTGATCGGTCAACTTTGAATGGGTGATAAGGTGCGCTACATACATACGCACATACAGAATCTGGTGAATGTTATTAGAAATGATAGTGAAAGATTGAAAAATGTTATAAATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCTGGGAATTCAAAATGAG</pcr_primer_p1>
		<pcr_primer_p2>GATATCGAAAATGTAAGCTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AATCTGGGAATTCAAAATGAGAAAGTTCTGAATTTCGAAATTTCAGCAAGTCAGAAAAGGGAAATCTAAGAATGTTGGAGGTTCCGAAAGTTAGTCATTTGAAAGTCTGAAATTTAGAATTTTGAAAATTTCGAAAATCGAAGTATCAAAAATTCAGAAAATCTAGATTCAGAATTTTGCGAATTTTCGAATTCGTGTTTTTTGCTGGAATTCGACATTTCAAAAGCTTACATTTTCGATATC</canonical_amplicon>
		<polymorphic_amplicon>AATCTGGGAATTCAAAATGAGAAAGTTCTGAATTTCGAAATTTCAGCAAGTCAGAAAAGGGAAATCTAAGAATGTTGGAGGTTCCGAAAGTTAGTCATTTGAAAGTCTGAAATTTWGAATTTTGAAAATTTCGAAAATCGAAGTATCAAAAATTCAGAAAATCTAGATTCAGAATTTTGCGAATTTTCGAATTCGTGTTTTTTGCTGGAATTCGACATTTCAAAAGCTTACATTTTCGATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28823</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>191782</contig_pos>
        <strand></strand>
        <context>aaatgtattt[C/A]ttttccggat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AGAATTTCATATTTTCAGAACGAAAACTACCGTAACCAAAAAATGTATTT</left_flank>
        <right_flank>TTTTCCGGATTGATTTTCTCGATTTTCTCGCGTTTTCTGGCAATTTCTTC</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCATTTTAATTTGATCGAAGGGGGACAACTGGTGACTGTGAATGAGAATAAGACAGATGCCTACAAATACATGTTCCCATTGGCTACTTCTGATCATAACAGTTTGGCTGTAATTGGACTCATTCAGCCAATCGGATCGATTATGCCAATCAGTGAAATGCAAGCCAGAGTTTATTTAGAGACCTTTGCAGGAGGTAGAGCATTGCCAAGTAGAGATGAGGTATTGTTAAAAAAACATACATGAAAATCAAAATTTTGAAAATTAAAAAAATTAAGAATATACATTTTGAAAGTGAAAAATTTAACATTTGGAAAATATTAAAAAATTCAAATTCAAATTTTAGAGTTTTAAGAAGGTTTTAGGATTTTTCGAATTAGGAAATTTATTGAAAAAATTCAGAACTTCGGAATTTTTGAATTTTCTAGTTTCAAATATTTTGTAATCTCAGAATTTCATATTTTCAGAACGAAAACTACCGTAACCAAAAAATGTATTTCTTTTCCGGATTGATTTTCTCGATTTTCTCGCGTTTTCTGGCAATTTCTTCGTTATTTACTAAAAATTGTACTCTCCGACTTTTTTTGGGAAAAAAAATGACAGAAAACTCTACAGCAAGCAGTGAAAAACGAGAAAATAAATTCGGAACATAAAAATATTGTTGATTACTGTAGATGTCGTTGGACCTTCGAACACCGGCGTTCTTCTTTCTTTGTTAGCTCCGAATTTTTTTATTCAAGCATAATAAAATATAAAGTATGTATTCAGATGAAAGACGACGTTGTCCTGAAGAGAGAAACCATGAGAGCCAGATACGTGGATAGTCGAAGGCACACAATTCAAGTGGACTTTGTAAACTATATGCATGAGCTGGGAGACATGATCGGATGTAATCCAGATATGAAGACGTTGTGGATGCAGAAACCGTTCCTCGCGTGGAAAGTATACTTCGGTCCTTGTGTCCCATACATTTTCAGGTTAAACGGACCGAATAGTTGGG</canonical>
            <polymorphic>TTCCATTTTAATTTGATCGAAGGGGGACAACTGGTGACTGTGAATGAGAATAAGACAGATGCCTACAAATACATGTTCCCATTGGCTACTTCTGATCATAACAGTTTGGCTGTAATTGGACTCATTCAGCCAATCGGATCGATTATGCCAATCAGTGAAATGCAAGCCAGAGTTTATTTAGAGACCTTTGCAGGAGGTAGAGCATTGCCAAGTAGAGATGAGGTATTGTTAAAAAAACATACATGAAAATCAAAATTTTGAAAATTAAAAAAATTAAGAATATACATTTTGAAAGTGAAAAATTTAACATTTGGAAAATATTAAAAAATTCAAATTCAAATTTTAGAGTTTTAAGAAGGTTTTAGGATTTTTCGAATTAGGAAATTTATTGAAAAAATTCAGAACTTCGGAATTTTTGAATTTTCTAGTTTCAAATATTTTGTAATCTCAGAATTTCATATTTTCAGAACGAAAACTACCGTAACCAAAAAATGTATTTMTTTTCCGGATTGATTTTCTCGATTTTCTCGCGTTTTCTGGCAATTTCTTCGTTATTTACTAAAAATTGTACTCTCCGACTTTTTTTGGGAAAAAAAATGACAGAAAACTCTACAGCAAGCAGTGAAAAACGAGAAAATAAATTCGGAACATAAAAATATTGTTGATTACTGTAGATGTCGTTGGACCTTCGAACACCGGCGTTCTTCTTTCTTTGTTAGCTCCGAATTTTTTTATTCAAGCATAATAAAATATAAAGTATGTATTCAGATGAAAGACGACGTTGTCCTGAAGAGAGAAACCATGAGAGCCAGATACGTGGATAGTCGAAGGCACACAATTCAAGTGGACTTTGTAAACTATATGCATGAGCTGGGAGACATGATCGGATGTAATCCAGATATGAAGACGTTGTGGATGCAGAAACCGTTCCTCGCGTGGAAAGTATACTTCGGTCCTTGTGTCCCATACATTTTCAGGTTAAACGGACCGAATAGTTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGAATTTTTGAATTTTCTAGTT</pcr_primer_p1>
		<pcr_primer_p2>CGTCTTTCATCTGAATACATACTT</pcr_primer_p2>
		<pcr_amplicon_size>371</pcr_amplicon_size>
		<canonical_amplicon>CGGAATTTTTGAATTTTCTAGTTTCAAATATTTTGTAATCTCAGAATTTCATATTTTCAGAACGAAAACTACCGTAACCAAAAAATGTATTTCTTTTCCGGATTGATTTTCTCGATTTTCTCGCGTTTTCTGGCAATTTCTTCGTTATTTACTAAAAATTGTACTCTCCGACTTTTTTTGGGAAAAAAAATGACAGAAAACTCTACAGCAAGCAGTGAAAAACGAGAAAATAAATTCGGAACATAAAAATATTGTTGATTACTGTAGATGTCGTTGGACCTTCGAACACCGGCGTTCTTCTTTCTTTGTTAGCTCCGAATTTTTTTATTCAAGCATAATAAAATATAAAGTATGTATTCAGATGAAAGACG</canonical_amplicon>
		<polymorphic_amplicon>CGGAATTTTTGAATTTTCTAGTTTCAAATATTTTGTAATCTCAGAATTTCATATTTTCAGAACGAAAACTACCGTAACCAAAAAATGTATTTMTTTTCCGGATTGATTTTCTCGATTTTCTCGCGTTTTCTGGCAATTTCTTCGTTATTTACTAAAAATTGTACTCTCCGACTTTTTTTGGGAAAAAAAATGACAGAAAACTCTACAGCAAGCAGTGAAAAACGAGAAAATAAATTCGGAACATAAAAATATTGTTGATTACTGTAGATGTCGTTGGACCTTCGAACACCGGCGTTCTTCTTTCTTTGTTAGCTCCGAATTTTTTTATTCAAGCATAATAAAATATAAAGTATGTATTCAGATGAAAGACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28824</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>219319</contig_pos>
        <strand>+</strand>
        <context>CTCCATCTCG[C/T]CCATTCCTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGAGATCAAGTCGTTCATGTTGCTTTCGGCTTCAGTGAACTCCATCTCG</left_flank>
        <right_flank>CCATTCCTTCACCAGTGTACCAATGGAGGAAAGCTTTTCTGCGGAACATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAACTTGTGGAATGACAGGCCCGGGCCTCCGAAATTCGGGAAAAAGCCCGGCCCGTTACAAGTATGCTATTTAGGCTCTCCGCTTCGATATCGCTACCGTATTCAAACTGCAAAAAGAACTCTCTAACCTTTTTTTTCTCAGACAAGCATAATAGAAAATACTTTTATTAGGCTGTATTTTCTTCCTAGAATAAATATATTTTAACGATTTTTACATTTAAATAGAAATAGAAGTTAATTTATAAGATGCATCTTTTATTCGTCAAATTTATTGGACAGTACCGAGCGAAATTAAAAGATCATGAGAGAGGGAAATACAATAATGGGCACAATAATTTAATTGTTCTGTGGAACGCAATTACTGCTCCGACTCGTAGGTCTCCCCTTCTCCAGTGAACTCATCAAGTGGCTCATCCTCGGCAGTAGCTTCTTGGTATTGCTGGTATTCGGAGATCAAGTCGTTCATGTTGCTTTCGGCTTCAGTGAACTCCATCTCGTCCATTCCTTCACCAGTGTACCAATGGAGGAAAGCTTTTCTGCGGAACATGGCGGTGAACTGCTCCGAGATACGCTTGAAAAGCTCTTGGATGGCGGTTGAGTTTCCTACGAATGTGGCAGCCATCTTGAGCCCGCGTGGTGGGATATCGCAGACAGCAGTCTTGACATTGTTCGGAATCCATTCCACGAAGTACGAAGAGTTCTTATTCTGTACGTTCAACATCTGTTCATCGACTTCCTGAAAAAAAAACAAGGGTCTTGATCCTCCTGATGAACTTTAACTCACTCTCATAGACATACGACCGCGGAACATCGCTGCAACGGTAAGATACCGTCCGTGTCTTGGATCGCAAGCAGCCATCATGTTCTTGGCATCGAACATTTGTTGGGTGAGCTCGGCGACGGTCAAGGCGCGGTAGGCCTGGGCTCCCTTGGCGGAGAGTGGAGCGAATCCTGGCATAAAGAAGTGAAGACGTGGGAATGGGACCATGTTAACTGCC</canonical>
            <polymorphic>CAAAACTTGTGGAATGACAGGCCCGGGCCTCCGAAATTCGGGAAAAAGCCCGGCCCGTTACAAGTATGCTATTTAGGCTCTCCGCTTCGATATCGCTACCGTATTCAAACTGCAAAAAGAACTCTCTAACCTTTTTTTTCTCAGACAAGCATAATAGAAAATACTTTTATTAGGCTGTATTTTCTTCCTAGAATAAATATATTTTAACGATTTTTACATTTAAATAGAAATAGAAGTTAATTTATAAGATGCATCTTTTATTCGTCAAATTTATTGGACAGTACCGAGCGAAATTAAAAGATCATGAGAGAGGGAAATACAATAATGGGCACAATAATTTAATTGTTCTGTGGAACGCAATTACTGCTCCGACTCGTAGGTCTCCCCTTCTCCAGTGAACTCATCAAGTGGCTCATCCTCGGCAGTAGCTTCTTGGTATTGCTGGTATTCGGAGATCAAGTCGTTCATGTTGCTTTCGGCTTCAGTGAACTCCATCTCGYCCATTCCTTCACCAGTGTACCAATGGAGGAAAGCTTTTCTGCGGAACATGGCGGTGAACTGCTCCGAGATACGCTTGAAAAGCTCTTGGATGGCGGTTGAGTTTCCTACGAATGTGGCAGCCATCTTGAGCCCGCGTGGTGGGATATCGCAGACAGCAGTCTTGACATTGTTCGGAATCCATTCCACGAAGTACGAAGAGTTCTTATTCTGTACGTTCAACATCTGTTCATCGACTTCCTGAAAAAAAAACAAGGGTCTTGATCCTCCTGATGAACTTTAACTCACTCTCATAGACATACGACCGCGGAACATCGCTGCAACGGTAAGATACCGTCCGTGTCTTGGATCGCAAGCAGCCATCATGTTCTTGGCATCGAACATTTGTTGGGTGAGCTCGGCGACGGTCAAGGCGCGGTAGGCCTGGGCTCCCTTGGCGGAGAGTGGAGCGAATCCTGGCATAAAGAAGTGAAGACGTGGGAATGGGACCATGTTAACTGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATTGCTGGTATTCGGAGAT</pcr_primer_p1>
		<pcr_primer_p2>TTCCGAACAATGTCAAGACT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTATTGCTGGTATTCGGAGATCAAGTCGTTCATGTTGCTTTCGGCTTCAGTGAACTCCATCTCGTCCATTCCTTCACCAGTGTACCAATGGAGGAAAGCTTTTCTGCGGAACATGGCGGTGAACTGCTCCGAGATACGCTTGAAAAGCTCTTGGATGGCGGTTGAGTTTCCTACGAATGTGGCAGCCATCTTGAGCCCGCGTGGTGGGATATCGCAGACAGCAGTCTTGACATTGTTCGGAA</canonical_amplicon>
		<polymorphic_amplicon>GTATTGCTGGTATTCGGAGATCAAGTCGTTCATGTTGCTTTCGGCTTCAGTGAACTCCATCTCGYCCATTCCTTCACCAGTGTACCAATGGAGGAAAGCTTTTCTGCGGAACATGGCGGTGAACTGCTCCGAGATACGCTTGAAAAGCTCTTGGATGGCGGTTGAGTTTCCTACGAATGTGGCAGCCATCTTGAGCCCGCGTGGTGGGATATCGCAGACAGCAGTCTTGACATTGTTCGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28825</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>219334</contig_pos>
        <strand>+</strand>
        <context>TCCTTCACCA[A/G]TGTACCAATG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATGTTGCTTTCGGCTTCAGTGAACTCCATCTCGTCCATTCCTTCACCA</left_flank>
        <right_flank>TGTACCAATGGAGGAAAGCTTTTCTGCGGAACATGGCGGTGAACTGCTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACAGGCCCGGGCCTCCGAAATTCGGGAAAAAGCCCGGCCCGTTACAAGTATGCTATTTAGGCTCTCCGCTTCGATATCGCTACCGTATTCAAACTGCAAAAAGAACTCTCTAACCTTTTTTTTCTCAGACAAGCATAATAGAAAATACTTTTATTAGGCTGTATTTTCTTCCTAGAATAAATATATTTTAACGATTTTTACATTTAAATAGAAATAGAAGTTAATTTATAAGATGCATCTTTTATTCGTCAAATTTATTGGACAGTACCGAGCGAAATTAAAAGATCATGAGAGAGGGAAATACAATAATGGGCACAATAATTTAATTGTTCTGTGGAACGCAATTACTGCTCCGACTCGTAGGTCTCCCCTTCTCCAGTGAACTCATCAAGTGGCTCATCCTCGGCAGTAGCTTCTTGGTATTGCTGGTATTCGGAGATCAAGTCGTTCATGTTGCTTTCGGCTTCAGTGAACTCCATCTCGTCCATTCCTTCACCAGTGTACCAATGGAGGAAAGCTTTTCTGCGGAACATGGCGGTGAACTGCTCCGAGATACGCTTGAAAAGCTCTTGGATGGCGGTTGAGTTTCCTACGAATGTGGCAGCCATCTTGAGCCCGCGTGGTGGGATATCGCAGACAGCAGTCTTGACATTGTTCGGAATCCATTCCACGAAGTACGAAGAGTTCTTATTCTGTACGTTCAACATCTGTTCATCGACTTCCTGAAAAAAAAACAAGGGTCTTGATCCTCCTGATGAACTTTAACTCACTCTCATAGACATACGACCGCGGAACATCGCTGCAACGGTAAGATACCGTCCGTGTCTTGGATCGCAAGCAGCCATCATGTTCTTGGCATCGAACATTTGTTGGGTGAGCTCGGCGACGGTCAAGGCGCGGTAGGCCTGGGCTCCCTTGGCGGAGAGTGGAGCGAATCCTGGCATAAAGAAGTGAAGACGTGGGAATGGGACCATGTTAACTGCCAACTTGCGAAGATCA</canonical>
            <polymorphic>GACAGGCCCGGGCCTCCGAAATTCGGGAAAAAGCCCGGCCCGTTACAAGTATGCTATTTAGGCTCTCCGCTTCGATATCGCTACCGTATTCAAACTGCAAAAAGAACTCTCTAACCTTTTTTTTCTCAGACAAGCATAATAGAAAATACTTTTATTAGGCTGTATTTTCTTCCTAGAATAAATATATTTTAACGATTTTTACATTTAAATAGAAATAGAAGTTAATTTATAAGATGCATCTTTTATTCGTCAAATTTATTGGACAGTACCGAGCGAAATTAAAAGATCATGAGAGAGGGAAATACAATAATGGGCACAATAATTTAATTGTTCTGTGGAACGCAATTACTGCTCCGACTCGTAGGTCTCCCCTTCTCCAGTGAACTCATCAAGTGGCTCATCCTCGGCAGTAGCTTCTTGGTATTGCTGGTATTCGGAGATCAAGTCGTTCATGTTGCTTTCGGCTTCAGTGAACTCCATCTCGTCCATTCCTTCACCARTGTACCAATGGAGGAAAGCTTTTCTGCGGAACATGGCGGTGAACTGCTCCGAGATACGCTTGAAAAGCTCTTGGATGGCGGTTGAGTTTCCTACGAATGTGGCAGCCATCTTGAGCCCGCGTGGTGGGATATCGCAGACAGCAGTCTTGACATTGTTCGGAATCCATTCCACGAAGTACGAAGAGTTCTTATTCTGTACGTTCAACATCTGTTCATCGACTTCCTGAAAAAAAAACAAGGGTCTTGATCCTCCTGATGAACTTTAACTCACTCTCATAGACATACGACCGCGGAACATCGCTGCAACGGTAAGATACCGTCCGTGTCTTGGATCGCAAGCAGCCATCATGTTCTTGGCATCGAACATTTGTTGGGTGAGCTCGGCGACGGTCAAGGCGCGGTAGGCCTGGGCTCCCTTGGCGGAGAGTGGAGCGAATCCTGGCATAAAGAAGTGAAGACGTGGGAATGGGACCATGTTAACTGCCAACTTGCGAAGATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>316 99 77 60 55 52 52 45 45 39 38 25 24 22 21 13 8 6 3</canonical_bands>
                <polymorphic_bands>316 99 77 60 55 52 52 45 45 45 38 25 24 22 21 13 8 3</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>437 382 90 39 30 22</canonical_bands>
                <polymorphic_bands>437 382 90 69 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGATCAAGTCGTTCATGTTG</pcr_primer_p1>
		<pcr_primer_p2>AACTCTTCGTACTTCGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAGATCAAGTCGTTCATGTTGCTTTCGGCTTCAGTGAACTCCATCTCGTCCATTCCTTCACCAGTGTACCAATGGAGGAAAGCTTTTCTGCGGAACATGGCGGTGAACTGCTCCGAGATACGCTTGAAAAGCTCTTGGATGGCGGTTGAGTTTCCTACGAATGTGGCAGCCATCTTGAGCCCGCGTGGTGGGATATCGCAGACAGCAGTCTTGACATTGTTCGGAATCCATTCCACGAAGTACGAAGAGTT</canonical_amplicon>
		<polymorphic_amplicon>GAGATCAAGTCGTTCATGTTGCTTTCGGCTTCAGTGAACTCCATCTCGTCCATTCCTTCACCARTGTACCAATGGAGGAAAGCTTTTCTGCGGAACATGGCGGTGAACTGCTCCGAGATACGCTTGAAAAGCTCTTGGATGGCGGTTGAGTTTCCTACGAATGTGGCAGCCATCTTGAGCCCGCGTGGTGGGATATCGCAGACAGCAGTCTTGACATTGTTCGGAATCCATTCCACGAAGTACGAAGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28826</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>219387</contig_pos>
        <strand>+</strand>
        <context>ACTGCTCCGA[C/G]ATACGCTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TACCAATGGAGGAAAGCTTTTCTGCGGAACATGGCGGTGAACTGCTCCGA</left_flank>
        <right_flank>ATACGCTTGAAAAGCTCTTGGATGGCGGTTGAGTTTCCTACGAATGTGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATTTAGGCTCTCCGCTTCGATATCGCTACCGTATTCAAACTGCAAAAAGAACTCTCTAACCTTTTTTTTCTCAGACAAGCATAATAGAAAATACTTTTATTAGGCTGTATTTTCTTCCTAGAATAAATATATTTTAACGATTTTTACATTTAAATAGAAATAGAAGTTAATTTATAAGATGCATCTTTTATTCGTCAAATTTATTGGACAGTACCGAGCGAAATTAAAAGATCATGAGAGAGGGAAATACAATAATGGGCACAATAATTTAATTGTTCTGTGGAACGCAATTACTGCTCCGACTCGTAGGTCTCCCCTTCTCCAGTGAACTCATCAAGTGGCTCATCCTCGGCAGTAGCTTCTTGGTATTGCTGGTATTCGGAGATCAAGTCGTTCATGTTGCTTTCGGCTTCAGTGAACTCCATCTCGTCCATTCCTTCACCAGTGTACCAATGGAGGAAAGCTTTTCTGCGGAACATGGCGGTGAACTGCTCCGAGATACGCTTGAAAAGCTCTTGGATGGCGGTTGAGTTTCCTACGAATGTGGCAGCCATCTTGAGCCCGCGTGGTGGGATATCGCAGACAGCAGTCTTGACATTGTTCGGAATCCATTCCACGAAGTACGAAGAGTTCTTATTCTGTACGTTCAACATCTGTTCATCGACTTCCTGAAAAAAAAACAAGGGTCTTGATCCTCCTGATGAACTTTAACTCACTCTCATAGACATACGACCGCGGAACATCGCTGCAACGGTAAGATACCGTCCGTGTCTTGGATCGCAAGCAGCCATCATGTTCTTGGCATCGAACATTTGTTGGGTGAGCTCGGCGACGGTCAAGGCGCGGTAGGCCTGGGCTCCCTTGGCGGAGAGTGGAGCGAATCCTGGCATAAAGAAGTGAAGACGTGGGAATGGGACCATGTTAACTGCCAACTTGCGAAGATCAGCATTGAGTTGTCCTGGGAAACGGAGACATGTGGTGACTCCAGACATTGTGAG</canonical>
            <polymorphic>CTATTTAGGCTCTCCGCTTCGATATCGCTACCGTATTCAAACTGCAAAAAGAACTCTCTAACCTTTTTTTTCTCAGACAAGCATAATAGAAAATACTTTTATTAGGCTGTATTTTCTTCCTAGAATAAATATATTTTAACGATTTTTACATTTAAATAGAAATAGAAGTTAATTTATAAGATGCATCTTTTATTCGTCAAATTTATTGGACAGTACCGAGCGAAATTAAAAGATCATGAGAGAGGGAAATACAATAATGGGCACAATAATTTAATTGTTCTGTGGAACGCAATTACTGCTCCGACTCGTAGGTCTCCCCTTCTCCAGTGAACTCATCAAGTGGCTCATCCTCGGCAGTAGCTTCTTGGTATTGCTGGTATTCGGAGATCAAGTCGTTCATGTTGCTTTCGGCTTCAGTGAACTCCATCTCGTCCATTCCTTCACCAGTGTACCAATGGAGGAAAGCTTTTCTGCGGAACATGGCGGTGAACTGCTCCGASATACGCTTGAAAAGCTCTTGGATGGCGGTTGAGTTTCCTACGAATGTGGCAGCCATCTTGAGCCCGCGTGGTGGGATATCGCAGACAGCAGTCTTGACATTGTTCGGAATCCATTCCACGAAGTACGAAGAGTTCTTATTCTGTACGTTCAACATCTGTTCATCGACTTCCTGAAAAAAAAACAAGGGTCTTGATCCTCCTGATGAACTTTAACTCACTCTCATAGACATACGACCGCGGAACATCGCTGCAACGGTAAGATACCGTCCGTGTCTTGGATCGCAAGCAGCCATCATGTTCTTGGCATCGAACATTTGTTGGGTGAGCTCGGCGACGGTCAAGGCGCGGTAGGCCTGGGCTCCCTTGGCGGAGAGTGGAGCGAATCCTGGCATAAAGAAGTGAAGACGTGGGAATGGGACCATGTTAACTGCCAACTTGCGAAGATCAGCATTGAGTTGTCCTGGGAAACGGAGACATGTGGTGACTCCAGACATTGTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTCAGTGAACTCCATCTC</pcr_primer_p1>
		<pcr_primer_p2>CAGATGTTGAACGTACAGAATAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCTTCAGTGAACTCCATCTCGTCCATTCCTTCACCAGTGTACCAATGGAGGAAAGCTTTTCTGCGGAACATGGCGGTGAACTGCTCCGAGATACGCTTGAAAAGCTCTTGGATGGCGGTTGAGTTTCCTACGAATGTGGCAGCCATCTTGAGCCCGCGTGGTGGGATATCGCAGACAGCAGTCTTGACATTGTTCGGAATCCATTCCACGAAGTACGAAGAGTTCTTATTCTGTACGTTCAACATCTG</canonical_amplicon>
		<polymorphic_amplicon>GCTTCAGTGAACTCCATCTCGTCCATTCCTTCACCAGTGTACCAATGGAGGAAAGCTTTTCTGCGGAACATGGCGGTGAACTGCTCCGASATACGCTTGAAAAGCTCTTGGATGGCGGTTGAGTTTCCTACGAATGTGGCAGCCATCTTGAGCCCGCGTGGTGGGATATCGCAGACAGCAGTCTTGACATTGTTCGGAATCCATTCCACGAAGTACGAAGAGTTCTTATTCTGTACGTTCAACATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28827</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>330610</contig_pos>
        <strand>+</strand>
        <context>GCCGAGGAAA[A/G]CTCACGCTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATTCTGTTGCCGATTCTTCGATTGTGGGAGACTCGATTGCCGAGGAAA</left_flank>
        <right_flank>CTCACGCTCTCCAGAAGATAATTCTAATCAACCAGACAAAGAGAAGCCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAATTCAATGTATAGTAAGCGTGGCCGAGAAGACGTATCGGAAAAAGCTGAAAGCCGACGTTGAGCTACTTGTTCAATTGATTGGTTTTGGAAACGAACATCAGAATCGAAAGTTCAATTCGTTCCGCACGGAAGCATTCTTCAGACGATGTGCACCTCCACCAAGTGCGAAGAACGTTCTAAATCAGAAAACACTGCGCGAGGTTGCACTGAATTCGCAAAAAGAGGCACTGGAAATATCGAAAGTCTACAGATATCATCCGATCCCCGATCAACTTGAAAACTTTGTTCTTCTAGCGTATAACACGCATTTCGAGTCTGCGCAGGAACGCGATTCGTATTTTCCTTCAAGTTTGACAATGTGGTCGAAAGAACCCATCGCGGCACTTCTTGCAAAATGGACTGAGAAAGATGTAGACGTCAGGGATATCGAGAAGTCTTCAACACCTGATTCTGTTGCCGATTCTTCGATTGTGGGAGACTCGATTGCCGAGGAAAACTCACGCTCTCCAGAAGATAATTCTAATCAACCAGACAAAGAGAAGCCAGTTGATGTAATAGATATTCCATCAAGATCTGAAACACCCGTCGTGGTAGATCCCGTCATAGTAAATCCTGAAGACAAAGTAGAAGAAGAAGAATCAAAAGAGAAAGAAAAAGAAAAAGACGAAGAGAGAACCATCACACCAGTCTACGAAAATGACACCGGACCTCTAGAGGATATCATAGGTAATCAATATTCAAATTTTCTAGAATAGAACCTCCTGATGTTACAGAAAGTACATATGAAATGATAGATAGATTGGCTCTTGGAGGCTTCAAGGAGATAAAAAAACCTGCATTATTCGAGAAATGTGGCAGTTTCGATGCTCTGGAATTGCTAGGACCGACCAAATTTTTCGGCTCAGATAATATGCGGAAATGCAAAAGTACAACGAATCTGTTATATGTTCCTGACTGGAATAGGCTTCATGTTAGTTTTTACTAGCAAAGAAAACA</canonical>
            <polymorphic>GGAATTCAATGTATAGTAAGCGTGGCCGAGAAGACGTATCGGAAAAAGCTGAAAGCCGACGTTGAGCTACTTGTTCAATTGATTGGTTTTGGAAACGAACATCAGAATCGAAAGTTCAATTCGTTCCGCACGGAAGCATTCTTCAGACGATGTGCACCTCCACCAAGTGCGAAGAACGTTCTAAATCAGAAAACACTGCGCGAGGTTGCACTGAATTCGCAAAAAGAGGCACTGGAAATATCGAAAGTCTACAGATATCATCCGATCCCCGATCAACTTGAAAACTTTGTTCTTCTAGCGTATAACACGCATTTCGAGTCTGCGCAGGAACGCGATTCGTATTTTCCTTCAAGTTTGACAATGTGGTCGAAAGAACCCATCGCGGCACTTCTTGCAAAATGGACTGAGAAAGATGTAGACGTCAGGGATATCGAGAAGTCTTCAACACCTGATTCTGTTGCCGATTCTTCGATTGTGGGAGACTCGATTGCCGAGGAAARCTCACGCTCTCCAGAAGATAATTCTAATCAACCAGACAAAGAGAAGCCAGTTGATGTAATAGATATTCCATCAAGATCTGAAACACCCGTCGTGGTAGATCCCGTCATAGTAAATCCTGAAGACAAAGTAGAAGAAGAAGAATCAAAAGAGAAAGAAAAAGAAAAAGACGAAGAGAGAACCATCACACCAGTCTACGAAAATGACACCGGACCTCTAGAGGATATCATAGGTAATCAATATTCAAATTTTCTAGAATAGAACCTCCTGATGTTACAGAAAGTACATATGAAATGATAGATAGATTGGCTCTTGGAGGCTTCAAGGAGATAAAAAAACCTGCATTATTCGAGAAATGTGGCAGTTTCGATGCTCTGGAATTGCTAGGACCGACCAAATTTTTCGGCTCAGATAATATGCGGAAATGCAAAAGTACAACGAATCTGTTATATGTTCCTGACTGGAATAGGCTTCATGTTAGTTTTTACTAGCAAAGAAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTCGTATTTTCCTTCAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>TGGAATATCTATTACATCAACTGG</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GATTCGTATTTTCCTTCAAGTTTGACAATGTGGTCGAAAGAACCCATCGCGGCACTTCTTGCAAAATGGACTGAGAAAGATGTAGACGTCAGGGATATCGAGAAGTCTTCAACACCTGATTCTGTTGCCGATTCTTCGATTGTGGGAGACTCGATTGCCGAGGAAAACTCACGCTCTCCAGAAGATAATTCTAATCAACCAGACAAAGAGAAGCCAGTTGATGTAATAGATATTCCA</canonical_amplicon>
		<polymorphic_amplicon>GATTCGTATTTTCCTTCAAGTTTGACAATGTGGTCGAAAGAACCCATCGCGGCACTTCTTGCAAAATGGACTGAGAAAGATGTAGACGTCAGGGATATCGAGAAGTCTTCAACACCTGATTCTGTTGCCGATTCTTCGATTGTGGGAGACTCGATTGCCGAGGAAARCTCACGCTCTCCAGAAGATAATTCTAATCAACCAGACAAAGAGAAGCCAGTTGATGTAATAGATATTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28828</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>330779</contig_pos>
        <strand></strand>
        <context>aagaaaaaga[C/A]gaagaGAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GAAGACAAAGTAGAAGAAGAAGAATCAAAAGAGAAAGAAAAAGAAAAAGA</left_flank>
        <right_flank>GAAGAGAGAACCATCACACCAGTCTACGAAAATGACACCGGACCTCTAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAAGAACGTTCTAAATCAGAAAACACTGCGCGAGGTTGCACTGAATTCGCAAAAAGAGGCACTGGAAATATCGAAAGTCTACAGATATCATCCGATCCCCGATCAACTTGAAAACTTTGTTCTTCTAGCGTATAACACGCATTTCGAGTCTGCGCAGGAACGCGATTCGTATTTTCCTTCAAGTTTGACAATGTGGTCGAAAGAACCCATCGCGGCACTTCTTGCAAAATGGACTGAGAAAGATGTAGACGTCAGGGATATCGAGAAGTCTTCAACACCTGATTCTGTTGCCGATTCTTCGATTGTGGGAGACTCGATTGCCGAGGAAAACTCACGCTCTCCAGAAGATAATTCTAATCAACCAGACAAAGAGAAGCCAGTTGATGTAATAGATATTCCATCAAGATCTGAAACACCCGTCGTGGTAGATCCCGTCATAGTAAATCCTGAAGACAAAGTAGAAGAAGAAGAATCAAAAGAGAAAGAAAAAGAAAAAGACGAAGAGAGAACCATCACACCAGTCTACGAAAATGACACCGGACCTCTAGAGGATATCATAGGTAATCAATATTCAAATTTTCTAGAATAGAACCTCCTGATGTTACAGAAAGTACATATGAAATGATAGATAGATTGGCTCTTGGAGGCTTCAAGGAGATAAAAAAACCTGCATTATTCGAGAAATGTGGCAGTTTCGATGCTCTGGAATTGCTAGGACCGACCAAATTTTTCGGCTCAGATAATATGCGGAAATGCAAAAGTACAACGAATCTGTTATATGTTCCTGACTGGAATAGGCTTCATGTTAGTTTTTACTAGCAAAGAAAACAAGAAAAGTAAAAATATTATTTCAGGACAACATTCAAAGTGTGCTTTATCGGGATATCAATGAACCATACTCTGAACATAGCTATGCAATGATTGGTTTAAACAAACCGTTCGATACAATGCCTGATTTCCAAAGCATGCCCTTCTCAATAGAGGACTACTACCCTGACG</canonical>
            <polymorphic>CGAAGAACGTTCTAAATCAGAAAACACTGCGCGAGGTTGCACTGAATTCGCAAAAAGAGGCACTGGAAATATCGAAAGTCTACAGATATCATCCGATCCCCGATCAACTTGAAAACTTTGTTCTTCTAGCGTATAACACGCATTTCGAGTCTGCGCAGGAACGCGATTCGTATTTTCCTTCAAGTTTGACAATGTGGTCGAAAGAACCCATCGCGGCACTTCTTGCAAAATGGACTGAGAAAGATGTAGACGTCAGGGATATCGAGAAGTCTTCAACACCTGATTCTGTTGCCGATTCTTCGATTGTGGGAGACTCGATTGCCGAGGAAAACTCACGCTCTCCAGAAGATAATTCTAATCAACCAGACAAAGAGAAGCCAGTTGATGTAATAGATATTCCATCAAGATCTGAAACACCCGTCGTGGTAGATCCCGTCATAGTAAATCCTGAAGACAAAGTAGAAGAAGAAGAATCAAAAGAGAAAGAAAAAGAAAAAGAMGAAGAGAGAACCATCACACCAGTCTACGAAAATGACACCGGACCTCTAGAGGATATCATAGGTAATCAATATTCAAATTTTCTAGAATAGAACCTCCTGATGTTACAGAAAGTACATATGAAATGATAGATAGATTGGCTCTTGGAGGCTTCAAGGAGATAAAAAAACCTGCATTATTCGAGAAATGTGGCAGTTTCGATGCTCTGGAATTGCTAGGACCGACCAAATTTTTCGGCTCAGATAATATGCGGAAATGCAAAAGTACAACGAATCTGTTATATGTTCCTGACTGGAATAGGCTTCATGTTAGTTTTTACTAGCAAAGAAAACAAGAAAAGTAAAAATATTATTTCAGGACAACATTCAAAGTGTGCTTTATCGGGATATCAATGAACCATACTCTGAACATAGCTATGCAATGATTGGTTTAAACAAACCGTTCGATACAATGCCTGATTTCCAAAGCATGCCCTTCTCAATAGAGGACTACTACCCTGACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTCCATCAAGATCTGAAACA</pcr_primer_p1>
		<pcr_primer_p2>GAGCCAATCTATCTATCATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATATTCCATCAAGATCTGAAACACCCGTCGTGGTAGATCCCGTCATAGTAAATCCTGAAGACAAAGTAGAAGAAGAAGAATCAAAAGAGAAAGAAAAAGAAAAAGACGAAGAGAGAACCATCACACCAGTCTACGAAAATGACACCGGACCTCTAGAGGATATCATAGGTAATCAATATTCAAATTTTCTAGAATAGAACCTCCTGATGTTACAGAAAGTACATATGAAATGATAGATAGATTGGCTC</canonical_amplicon>
		<polymorphic_amplicon>ATATTCCATCAAGATCTGAAACACCCGTCGTGGTAGATCCCGTCATAGTAAATCCTGAAGACAAAGTAGAAGAAGAAGAATCAAAAGAGAAAGAAAAAGAAAAAGAMGAAGAGAGAACCATCACACCAGTCTACGAAAATGACACCGGACCTCTAGAGGATATCATAGGTAATCAATATTCAAATTTTCTAGAATAGAACCTCCTGATGTTACAGAAAGTACATATGAAATGATAGATAGATTGGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28829</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>333517</contig_pos>
        <strand></strand>
        <context>tgaaagatat[A/G]aggcatttgt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCAAATCGTCAACTTTGAGTCAATTTATCTCAATTTCTGTGAAAGATAT</left_flank>
        <right_flank>AGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGATGTATTTGCTGAAGCTCCAAGAAGAAGATCTAGTGGTGAAGTAAGCTAGAAAGTTTGAATTTGAGTAGAAAACTTTGTTATTTCAGTCTAACTCTATTAGTAGAGCGATACGCAATGCTTTGGATCCTGAGTATTATGTACAACCATCTATGGATGTTCTGGCATCCAACAGTTACGACGATTCATCCATTCTGGCAGCAGTTTCATCTACTCATTCGTCGCAAGAAGCGGGAAGTTCACAGCCGGAAGTAACTTCCACGTCTCAAAAACACAAGTTGAAGAAGCCAAAACCTAAATCAGAAAATAATGGATTTGCATCCATCTTCAATACATTATCTTCAAAAACTAAAACCCATGATGATGGTCCGTTATTGCAAGAAGACTTTTTATCACCAGACAACATCAAAGTTAGTATTGATACGATATTTCCTGTAATAGAAGTCCACCCAAATCGTCAACTTTGAGTCAATTTATCTCAATTTCTGTGAAAGATATAAGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTGTCATGTTTTTGATATCTTTCACATGAATAGAGATAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTCTAGTAGATACAGTTTTTCGAATTTCTGATTTTCCCAGCGCTACCGCCTCGAACAACGCAAACAACGACCGAAACAAGTTCGAATGGATGATTTCCTGTTTAAAGCGCGAAGAGTTGATAAAGGAGCCAGAGAATTCGGACTGCACACCACTCACGAACCAAAAAGAGGCAGTAAAAAAAAGAGGGATTCGATTGAAATGCTAGAAGTAAAAAAAGCGGATTACGAAAGGGTGAAACAGAAGAAGAGAGACGAAGTGATCGAGAAAAGGAAAGCGGAAGTGGATGAACTGGATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGCTGTCGCAATGTATCAAAAATAACCAAATTCTTCGAAAAAGACG</canonical>
            <polymorphic>TAGATGTATTTGCTGAAGCTCCAAGAAGAAGATCTAGTGGTGAAGTAAGCTAGAAAGTTTGAATTTGAGTAGAAAACTTTGTTATTTCAGTCTAACTCTATTAGTAGAGCGATACGCAATGCTTTGGATCCTGAGTATTATGTACAACCATCTATGGATGTTCTGGCATCCAACAGTTACGACGATTCATCCATTCTGGCAGCAGTTTCATCTACTCATTCGTCGCAAGAAGCGGGAAGTTCACAGCCGGAAGTAACTTCCACGTCTCAAAAACACAAGTTGAAGAAGCCAAAACCTAAATCAGAAAATAATGGATTTGCATCCATCTTCAATACATTATCTTCAAAAACTAAAACCCATGATGATGGTCCGTTATTGCAAGAAGACTTTTTATCACCAGACAACATCAAAGTTAGTATTGATACGATATTTCCTGTAATAGAAGTCCACCCAAATCGTCAACTTTGAGTCAATTTATCTCAATTTCTGTGAAAGATATRAGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTGTCATGTTTTTGATATCTTTCACATGAATAGAGATAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTCTAGTAGATACAGTTTTTCGAATTTCTGATTTTCCCAGCGCTACCGCCTCGAACAACGCAAACAACGACCGAAACAAGTTCGAATGGATGATTTCCTGTTTAAAGCGCGAAGAGTTGATAAAGGAGCCAGAGAATTCGGACTGCACACCACTCACGAACCAAAAAGAGGCAGTAAAAAAAAGAGGGATTCGATTGAAATGCTAGAAGTAAAAAAAGCGGATTACGAAAGGGTGAAACAGAAGAAGAGAGACGAAGTGATCGAGAAAAGGAAAGCGGAAGTGGATGAACTGGATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGCTGTCGCAATGTATCAAAAATAACCAAATTCTTCGAAAAAGACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGACAACATCAAAGTTAGTATT</pcr_primer_p1>
		<pcr_primer_p2>TCAGAAATTCGAAAAACTGTATC</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>CCAGACAACATCAAAGTTAGTATTGATACGATATTTCCTGTAATAGAAGTCCACCCAAATCGTCAACTTTGAGTCAATTTATCTCAATTTCTGTGAAAGATATAAGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTGTCATGTTTTTGATATCTTTCACATGAATAGAGATAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTCTAGTAGATACAGTTTTTCGAATTTCTGA</canonical_amplicon>
		<polymorphic_amplicon>CCAGACAACATCAAAGTTAGTATTGATACGATATTTCCTGTAATAGAAGTCCACCCAAATCGTCAACTTTGAGTCAATTTATCTCAATTTCTGTGAAAGATATRAGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTGTCATGTTTTTGATATCTTTCACATGAATAGAGATAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTCTAGTAGATACAGTTTTTCGAATTTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28830</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>333575</contig_pos>
        <strand></strand>
        <context>ttattagttg[T/A]catgtttttg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTG</left_flank>
        <right_flank>CATGTTTTTGATATCTTTCACATGAATAGAGATAATTGAGCTAAAATTAG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAATTTGAGTAGAAAACTTTGTTATTTCAGTCTAACTCTATTAGTAGAGCGATACGCAATGCTTTGGATCCTGAGTATTATGTACAACCATCTATGGATGTTCTGGCATCCAACAGTTACGACGATTCATCCATTCTGGCAGCAGTTTCATCTACTCATTCGTCGCAAGAAGCGGGAAGTTCACAGCCGGAAGTAACTTCCACGTCTCAAAAACACAAGTTGAAGAAGCCAAAACCTAAATCAGAAAATAATGGATTTGCATCCATCTTCAATACATTATCTTCAAAAACTAAAACCCATGATGATGGTCCGTTATTGCAAGAAGACTTTTTATCACCAGACAACATCAAAGTTAGTATTGATACGATATTTCCTGTAATAGAAGTCCACCCAAATCGTCAACTTTGAGTCAATTTATCTCAATTTCTGTGAAAGATATAAGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTGTCATGTTTTTGATATCTTTCACATGAATAGAGATAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTCTAGTAGATACAGTTTTTCGAATTTCTGATTTTCCCAGCGCTACCGCCTCGAACAACGCAAACAACGACCGAAACAAGTTCGAATGGATGATTTCCTGTTTAAAGCGCGAAGAGTTGATAAAGGAGCCAGAGAATTCGGACTGCACACCACTCACGAACCAAAAAGAGGCAGTAAAAAAAAGAGGGATTCGATTGAAATGCTAGAAGTAAAAAAAGCGGATTACGAAAGGGTGAAACAGAAGAAGAGAGACGAAGTGATCGAGAAAAGGAAAGCGGAAGTGGATGAACTGGATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGCTGTCGCAATGTATCAAAAATAACCAAATTCTTCGAAAAAGACGCTGCGAGACCTTCATTTCAATCTCCAAAAAGATCGAGCAATTCGGAATCATATGCAAG</canonical>
            <polymorphic>TTGAATTTGAGTAGAAAACTTTGTTATTTCAGTCTAACTCTATTAGTAGAGCGATACGCAATGCTTTGGATCCTGAGTATTATGTACAACCATCTATGGATGTTCTGGCATCCAACAGTTACGACGATTCATCCATTCTGGCAGCAGTTTCATCTACTCATTCGTCGCAAGAAGCGGGAAGTTCACAGCCGGAAGTAACTTCCACGTCTCAAAAACACAAGTTGAAGAAGCCAAAACCTAAATCAGAAAATAATGGATTTGCATCCATCTTCAATACATTATCTTCAAAAACTAAAACCCATGATGATGGTCCGTTATTGCAAGAAGACTTTTTATCACCAGACAACATCAAAGTTAGTATTGATACGATATTTCCTGTAATAGAAGTCCACCCAAATCGTCAACTTTGAGTCAATTTATCTCAATTTCTGTGAAAGATATAAGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTGWCATGTTTTTGATATCTTTCACATGAATAGAGATAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTCTAGTAGATACAGTTTTTCGAATTTCTGATTTTCCCAGCGCTACCGCCTCGAACAACGCAAACAACGACCGAAACAAGTTCGAATGGATGATTTCCTGTTTAAAGCGCGAAGAGTTGATAAAGGAGCCAGAGAATTCGGACTGCACACCACTCACGAACCAAAAAGAGGCAGTAAAAAAAAGAGGGATTCGATTGAAATGCTAGAAGTAAAAAAAGCGGATTACGAAAGGGTGAAACAGAAGAAGAGAGACGAAGTGATCGAGAAAAGGAAAGCGGAAGTGGATGAACTGGATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGCTGTCGCAATGTATCAAAAATAACCAAATTCTTCGAAAAAGACGCTGCGAGACCTTCATTTCAATCTCCAAAAAGATCGAGCAATTCGGAATCATATGCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGACAACATCAAAGTTAGTATT</pcr_primer_p1>
		<pcr_primer_p2>TCAGAAATTCGAAAAACTGTATC</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>CCAGACAACATCAAAGTTAGTATTGATACGATATTTCCTGTAATAGAAGTCCACCCAAATCGTCAACTTTGAGTCAATTTATCTCAATTTCTGTGAAAGATATAAGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTGTCATGTTTTTGATATCTTTCACATGAATAGAGATAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTCTAGTAGATACAGTTTTTCGAATTTCTGA</canonical_amplicon>
		<polymorphic_amplicon>CCAGACAACATCAAAGTTAGTATTGATACGATATTTCCTGTAATAGAAGTCCACCCAAATCGTCAACTTTGAGTCAATTTATCTCAATTTCTGTGAAAGATATAAGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTGWCATGTTTTTGATATCTTTCACATGAATAGAGATAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTCTAGTAGATACAGTTTTTCGAATTTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28831</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>333608</contig_pos>
        <strand></strand>
        <context>tgaatagaga[T/A]aattgagcta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CATTATTTTATTAGTTGTCATGTTTTTGATATCTTTCACATGAATAGAGA</left_flank>
        <right_flank>AATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTCTAGTAGATACAGTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAACTCTATTAGTAGAGCGATACGCAATGCTTTGGATCCTGAGTATTATGTACAACCATCTATGGATGTTCTGGCATCCAACAGTTACGACGATTCATCCATTCTGGCAGCAGTTTCATCTACTCATTCGTCGCAAGAAGCGGGAAGTTCACAGCCGGAAGTAACTTCCACGTCTCAAAAACACAAGTTGAAGAAGCCAAAACCTAAATCAGAAAATAATGGATTTGCATCCATCTTCAATACATTATCTTCAAAAACTAAAACCCATGATGATGGTCCGTTATTGCAAGAAGACTTTTTATCACCAGACAACATCAAAGTTAGTATTGATACGATATTTCCTGTAATAGAAGTCCACCCAAATCGTCAACTTTGAGTCAATTTATCTCAATTTCTGTGAAAGATATAAGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTGTCATGTTTTTGATATCTTTCACATGAATAGAGATAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTCTAGTAGATACAGTTTTTCGAATTTCTGATTTTCCCAGCGCTACCGCCTCGAACAACGCAAACAACGACCGAAACAAGTTCGAATGGATGATTTCCTGTTTAAAGCGCGAAGAGTTGATAAAGGAGCCAGAGAATTCGGACTGCACACCACTCACGAACCAAAAAGAGGCAGTAAAAAAAAGAGGGATTCGATTGAAATGCTAGAAGTAAAAAAAGCGGATTACGAAAGGGTGAAACAGAAGAAGAGAGACGAAGTGATCGAGAAAAGGAAAGCGGAAGTGGATGAACTGGATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGCTGTCGCAATGTATCAAAAATAACCAAATTCTTCGAAAAAGACGCTGCGAGACCTTCATTTCAATCTCCAAAAAGATCGAGCAATTCGGAATCATATGCAAGCGATAGTTTTTTAAATGACACATATTCTACGCC</canonical>
            <polymorphic>CTAACTCTATTAGTAGAGCGATACGCAATGCTTTGGATCCTGAGTATTATGTACAACCATCTATGGATGTTCTGGCATCCAACAGTTACGACGATTCATCCATTCTGGCAGCAGTTTCATCTACTCATTCGTCGCAAGAAGCGGGAAGTTCACAGCCGGAAGTAACTTCCACGTCTCAAAAACACAAGTTGAAGAAGCCAAAACCTAAATCAGAAAATAATGGATTTGCATCCATCTTCAATACATTATCTTCAAAAACTAAAACCCATGATGATGGTCCGTTATTGCAAGAAGACTTTTTATCACCAGACAACATCAAAGTTAGTATTGATACGATATTTCCTGTAATAGAAGTCCACCCAAATCGTCAACTTTGAGTCAATTTATCTCAATTTCTGTGAAAGATATAAGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTGTCATGTTTTTGATATCTTTCACATGAATAGAGAWAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTCTAGTAGATACAGTTTTTCGAATTTCTGATTTTCCCAGCGCTACCGCCTCGAACAACGCAAACAACGACCGAAACAAGTTCGAATGGATGATTTCCTGTTTAAAGCGCGAAGAGTTGATAAAGGAGCCAGAGAATTCGGACTGCACACCACTCACGAACCAAAAAGAGGCAGTAAAAAAAAGAGGGATTCGATTGAAATGCTAGAAGTAAAAAAAGCGGATTACGAAAGGGTGAAACAGAAGAAGAGAGACGAAGTGATCGAGAAAAGGAAAGCGGAAGTGGATGAACTGGATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGCTGTCGCAATGTATCAAAAATAACCAAATTCTTCGAAAAAGACGCTGCGAGACCTTCATTTCAATCTCCAAAAAGATCGAGCAATTCGGAATCATATGCAAGCGATAGTTTTTTAAATGACACATATTCTACGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGACAACATCAAAGTTAGTATT</pcr_primer_p1>
		<pcr_primer_p2>TCAGAAATTCGAAAAACTGTATC</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>CCAGACAACATCAAAGTTAGTATTGATACGATATTTCCTGTAATAGAAGTCCACCCAAATCGTCAACTTTGAGTCAATTTATCTCAATTTCTGTGAAAGATATAAGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTGTCATGTTTTTGATATCTTTCACATGAATAGAGATAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTCTAGTAGATACAGTTTTTCGAATTTCTGA</canonical_amplicon>
		<polymorphic_amplicon>CCAGACAACATCAAAGTTAGTATTGATACGATATTTCCTGTAATAGAAGTCCACCCAAATCGTCAACTTTGAGTCAATTTATCTCAATTTCTGTGAAAGATATAAGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTGTCATGTTTTTGATATCTTTCACATGAATAGAGAWAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTCTAGTAGATACAGTTTTTCGAATTTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28832</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>333643</contig_pos>
        <strand>+</strand>
        <context>gggtaggctt[C/T]tagtaGATAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCACATGAATAGAGATAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTT</left_flank>
        <right_flank>TAGTAGATACAGTTTTTCGAATTTCTGATTTTCCCAGCGCTACCGCCTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATCCTGAGTATTATGTACAACCATCTATGGATGTTCTGGCATCCAACAGTTACGACGATTCATCCATTCTGGCAGCAGTTTCATCTACTCATTCGTCGCAAGAAGCGGGAAGTTCACAGCCGGAAGTAACTTCCACGTCTCAAAAACACAAGTTGAAGAAGCCAAAACCTAAATCAGAAAATAATGGATTTGCATCCATCTTCAATACATTATCTTCAAAAACTAAAACCCATGATGATGGTCCGTTATTGCAAGAAGACTTTTTATCACCAGACAACATCAAAGTTAGTATTGATACGATATTTCCTGTAATAGAAGTCCACCCAAATCGTCAACTTTGAGTCAATTTATCTCAATTTCTGTGAAAGATATAAGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTGTCATGTTTTTGATATCTTTCACATGAATAGAGATAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTCTAGTAGATACAGTTTTTCGAATTTCTGATTTTCCCAGCGCTACCGCCTCGAACAACGCAAACAACGACCGAAACAAGTTCGAATGGATGATTTCCTGTTTAAAGCGCGAAGAGTTGATAAAGGAGCCAGAGAATTCGGACTGCACACCACTCACGAACCAAAAAGAGGCAGTAAAAAAAAGAGGGATTCGATTGAAATGCTAGAAGTAAAAAAAGCGGATTACGAAAGGGTGAAACAGAAGAAGAGAGACGAAGTGATCGAGAAAAGGAAAGCGGAAGTGGATGAACTGGATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGCTGTCGCAATGTATCAAAAATAACCAAATTCTTCGAAAAAGACGCTGCGAGACCTTCATTTCAATCTCCAAAAAGATCGAGCAATTCGGAATCATATGCAAGCGATAGTTTTTTAAATGACACATATTCTACGCCAATAAAGGAAACTGTCCCTGAAACCTATTCAACGC</canonical>
            <polymorphic>GATCCTGAGTATTATGTACAACCATCTATGGATGTTCTGGCATCCAACAGTTACGACGATTCATCCATTCTGGCAGCAGTTTCATCTACTCATTCGTCGCAAGAAGCGGGAAGTTCACAGCCGGAAGTAACTTCCACGTCTCAAAAACACAAGTTGAAGAAGCCAAAACCTAAATCAGAAAATAATGGATTTGCATCCATCTTCAATACATTATCTTCAAAAACTAAAACCCATGATGATGGTCCGTTATTGCAAGAAGACTTTTTATCACCAGACAACATCAAAGTTAGTATTGATACGATATTTCCTGTAATAGAAGTCCACCCAAATCGTCAACTTTGAGTCAATTTATCTCAATTTCTGTGAAAGATATAAGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTGTCATGTTTTTGATATCTTTCACATGAATAGAGATAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTYTAGTAGATACAGTTTTTCGAATTTCTGATTTTCCCAGCGCTACCGCCTCGAACAACGCAAACAACGACCGAAACAAGTTCGAATGGATGATTTCCTGTTTAAAGCGCGAAGAGTTGATAAAGGAGCCAGAGAATTCGGACTGCACACCACTCACGAACCAAAAAGAGGCAGTAAAAAAAAGAGGGATTCGATTGAAATGCTAGAAGTAAAAAAAGCGGATTACGAAAGGGTGAAACAGAAGAAGAGAGACGAAGTGATCGAGAAAAGGAAAGCGGAAGTGGATGAACTGGATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGCTGTCGCAATGTATCAAAAATAACCAAATTCTTCGAAAAAGACGCTGCGAGACCTTCATTTCAATCTCCAAAAAGATCGAGCAATTCGGAATCATATGCAAGCGATAGTTTTTTAAATGACACATATTCTACGCCAATAAAGGAAACTGTCCCTGAAACCTATTCAACGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 300 200</canonical_bands>
                <polymorphic_bands>700 300</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAGACAACATCAAAGTTAGTATT</pcr_primer_p1>
		<pcr_primer_p2>CATCCATTCGAACTTGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>319</pcr_amplicon_size>
		<canonical_amplicon>CCAGACAACATCAAAGTTAGTATTGATACGATATTTCCTGTAATAGAAGTCCACCCAAATCGTCAACTTTGAGTCAATTTATCTCAATTTCTGTGAAAGATATAAGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTGTCATGTTTTTGATATCTTTCACATGAATAGAGATAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTCTAGTAGATACAGTTTTTCGAATTTCTGATTTTCCCAGCGCTACCGCCTCGAACAACGCAAACAACGACCGAAACAAGTTCGAATGGATG</canonical_amplicon>
		<polymorphic_amplicon>CCAGACAACATCAAAGTTAGTATTGATACGATATTTCCTGTAATAGAAGTCCACCCAAATCGTCAACTTTGAGTCAATTTATCTCAATTTCTGTGAAAGATATAAGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTGTCATGTTTTTGATATCTTTCACATGAATAGAGATAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTYTAGTAGATACAGTTTTTCGAATTTCTGATTTTCCCAGCGCTACCGCCTCGAACAACGCAAACAACGACCGAAACAAGTTCGAATGGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28833</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>333816</contig_pos>
        <strand>+</strand>
        <context>AAGAGGCAGT[A/G]AAAAAAAGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGCCAGAGAATTCGGACTGCACACCACTCACGAACCAAAAAGAGGCAGT</left_flank>
        <right_flank>AAAAAAAGAGGGATTCGATTGAAATGCTAGAAGTAAAAAAAGCGGATTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAGAAAATAATGGATTTGCATCCATCTTCAATACATTATCTTCAAAAACTAAAACCCATGATGATGGTCCGTTATTGCAAGAAGACTTTTTATCACCAGACAACATCAAAGTTAGTATTGATACGATATTTCCTGTAATAGAAGTCCACCCAAATCGTCAACTTTGAGTCAATTTATCTCAATTTCTGTGAAAGATATAAGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTGTCATGTTTTTGATATCTTTCACATGAATAGAGATAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTCTAGTAGATACAGTTTTTCGAATTTCTGATTTTCCCAGCGCTACCGCCTCGAACAACGCAAACAACGACCGAAACAAGTTCGAATGGATGATTTCCTGTTTAAAGCGCGAAGAGTTGATAAAGGAGCCAGAGAATTCGGACTGCACACCACTCACGAACCAAAAAGAGGCAGTAAAAAAAAGAGGGATTCGATTGAAATGCTAGAAGTAAAAAAAGCGGATTACGAAAGGGTGAAACAGAAGAAGAGAGACGAAGTGATCGAGAAAAGGAAAGCGGAAGTGGATGAACTGGATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGCTGTCGCAATGTATCAAAAATAACCAAATTCTTCGAAAAAGACGCTGCGAGACCTTCATTTCAATCTCCAAAAAGATCGAGCAATTCGGAATCATATGCAAGCGATAGTTTTTTAAATGACACATATTCTACGCCAATAAAGGAAACTGTCCCTGAAACCTATTCAACGCCAACGTCTTCTAAAATCAGAAAGTGCTCGGAGCGAACCACATTTTTCGATAAAGGACCTTCTACTTCTTCAGCTGCACTTTTCCAATCCCCAGCGAGAAAAATCACAATCAACGATCCGAATTCGTACTACTCCAGCGAAACGGTCCTAGACGACACTTTATGCTCAACTCCA</canonical>
            <polymorphic>ATCAGAAAATAATGGATTTGCATCCATCTTCAATACATTATCTTCAAAAACTAAAACCCATGATGATGGTCCGTTATTGCAAGAAGACTTTTTATCACCAGACAACATCAAAGTTAGTATTGATACGATATTTCCTGTAATAGAAGTCCACCCAAATCGTCAACTTTGAGTCAATTTATCTCAATTTCTGTGAAAGATATAAGGCATTTGTCAACTGATAAATTATTCATCATAAATTCATCATTATTTTATTAGTTGTCATGTTTTTGATATCTTTCACATGAATAGAGATAATTGAGCTAAAATTAGACGGTTTGGGTAGGCTTCTAGTAGATACAGTTTTTCGAATTTCTGATTTTCCCAGCGCTACCGCCTCGAACAACGCAAACAACGACCGAAACAAGTTCGAATGGATGATTTCCTGTTTAAAGCGCGAAGAGTTGATAAAGGAGCCAGAGAATTCGGACTGCACACCACTCACGAACCAAAAAGAGGCAGTRAAAAAAAGAGGGATTCGATTGAAATGCTAGAAGTAAAAAAAGCGGATTACGAAAGGGTGAAACAGAAGAAGAGAGACGAAGTGATCGAGAAAAGGAAAGCGGAAGTGGATGAACTGGATCTGTCATTAGCGTTTGGAACACCAAGTCCAGTGAGAAGCTGTCGCAATGTATCAAAAATAACCAAATTCTTCGAAAAAGACGCTGCGAGACCTTCATTTCAATCTCCAAAAAGATCGAGCAATTCGGAATCATATGCAAGCGATAGTTTTTTAAATGACACATATTCTACGCCAATAAAGGAAACTGTCCCTGAAACCTATTCAACGCCAACGTCTTCTAAAATCAGAAAGTGCTCGGAGCGAACCACATTTTTCGATAAAGGACCTTCTACTTCTTCAGCTGCACTTTTCCAATCCCCAGCGAGAAAAATCACAATCAACGATCCGAATTCGTACTACTCCAGCGAAACGGTCCTAGACGACACTTTATGCTCAACTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACAGTTTTTCGAATTTCTGATT</pcr_primer_p1>
		<pcr_primer_p2>ACTTCGTCTCTCTTCTTCTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TACAGTTTTTCGAATTTCTGATTTTCCCAGCGCTACCGCCTCGAACAACGCAAACAACGACCGAAACAAGTTCGAATGGATGATTTCCTGTTTAAAGCGCGAAGAGTTGATAAAGGAGCCAGAGAATTCGGACTGCACACCACTCACGAACCAAAAAGAGGCAGTAAAAAAAAGAGGGATTCGATTGAAATGCTAGAAGTAAAAAAAGCGGATTACGAAAGGGTGAAACAGAAGAAGAGAGACGAAGT</canonical_amplicon>
		<polymorphic_amplicon>TACAGTTTTTCGAATTTCTGATTTTCCCAGCGCTACCGCCTCGAACAACGCAAACAACGACCGAAACAAGTTCGAATGGATGATTTCCTGTTTAAAGCGCGAAGAGTTGATAAAGGAGCCAGAGAATTCGGACTGCACACCACTCACGAACCAAAAAGAGGCAGTRAAAAAAAGAGGGATTCGATTGAAATGCTAGAAGTAAAAAAAGCGGATTACGAAAGGGTGAAACAGAAGAAGAGAGACGAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28834</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>347736</contig_pos>
        <strand>+</strand>
        <context>TCTGAATCCT[A/C]GAAATTCAAY</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATTATTTTTTTTTGCTCCTCCCACTTTTCTCAACCATTTTCTGAATCCT</left_flank>
        <right_flank>GAAATTCAACGTTGTTATTGTGTTGTCCTTTTTCTTCTTCTATTCTGCCT</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACTTTTCAACGAATCTGGGCTCTTGATTCGGAGGGTATACACAATTCGGGGGATCAAAATTTGGATTTTCAGGTATTTTGTACCGCCGAATGGAGGATTTCATACCCCCAAATTGCCCAATGACCCAAAAATTTTTGTACGAATAAATTTCCCAAAATCTGACCGTTGCCCGTTTTACAGCTGTTTTTGGGCAAGTTCAGACCAGAACCTGACCAATATCCGTACAAAAGACCTCAACTTCTGACCAGAAGTTACAATTTCTTCTAATCTTTTTTGAAAGATTACCTTCTTTTTTTTTAAATTTCCCCTTAAAAAAACTAATTTCCCGACTCCAATAGAAAGACCACCTGATAAAACTGTCTGATCACCTATCTCAGTTTATTTTTCTTCTTCCTGTTTGCTCTTGATTATTTTCTTATTTAACTCCTTTCAAATAATATGACTTTCTATTATTTTTTTTTGCTCCTCCCACTTTTCTCAACCATTTTCTGAATCCTAGAAATTCAACGTTGTTATTGTGTTGTCCTTTTTCTTCTTCTATTCTGCCTTTCTTCGCTTCAATGTCTCCCGGCTGTTTCTGAAAGCAAACACTGTAAGAGAAAATAGTGTAGAAAATCGAGAGGCATTCAAAGAAACAGAGAAACACAACAAATATTACGAATTTCGCATTTTGGCGAGAAAGAAAGAGGACTCCGGGGATGGAAAAGTGAGGTAAAGTCTGTTGGTTGTATGCACATGAGAACTGCGGGGAATACGCATGATTCATACATCATACGTTCTATGTATGTCTCCTGTTGCTCTTTTTTCATATTTCTTTTGTTTTCCATTGTTTCTGAGAATCTTTTAATCTGGATTTTTAAATTTCTATTTTGCGATTTGAATTCCTCCTCACATCACAAGTCAGATTTTTTCCTTTCTGTATGAACTCACGAATTCGGAAAATATTTCTGTCTAAACTGGAAAACCATGAAACATTCTTTTAGGTTCGTTTCTTAGGT</canonical>
            <polymorphic>CAACTTTTCAACGAATCTGGGCTCTTGATTCGGAGGGTATACACAATTCGGGGGATCAAAATTTGGATTTTCAGGTATTTTGTACCGCCGAATGGAGGATTTCATACCCCCAAATTGCCCAATGACCCAAAAATTTTTGTACGAATAAATTTCCCAAAATCTGACCGTTGCCCGTTTTACAGCTGTTTTTGGGCAAGTTCAGACCAGAACCTGACCAATATCCGTACAAAAGACCTCAACTTCTGACCAGAAGTTACAATTTCTTCTAATCTTTTTTGAAAGATTACCTTCTTTTTTTTTAAATTTCCCCTTAAAAAAACTAATTTCCCGACTCCAATAGAAAGACCACCTGATAAAACTGTCTGATCACCTATCTCAGTTTATTTTTCTTCTTCCTGTTTGCTCTTGATTATTTTCTTATTTAACTCCTTTCAAATAATATGACTTTCTATTATTTTTTTTTGCTCCTCCCACTTTTCTCAACCATTTTCTGAATCCTMGAAATTCAACGTTGTTATTGTGTTGTCCTTTTTCTTCTTCTATTCTGCCTTTCTTCGCTTCAATGTCTCCCGGCTGTTTCTGAAAGCAAACACTGTAAGAGAAAATAGTGTAGAAAATCGAGAGGCATTCAAAGAAACAGAGAAACACAACAAATATTACGAATTTCGCATTTTGGCGAGAAAGAAAGAGGACTCCGGGGATGGAAAAGTGAGGTAAAGTCTGTTGGTTGTATGCACATGAGAACTGCGGGGAATACGCATGATTCATACATCATACGTTCTATGTATGTCTCCTGTTGCTCTTTTTTCATATTTCTTTTGTTTTCCATTGTTTCTGAGAATCTTTTAATCTGGATTTTTAAATTTCTATTTTGCGATTTGAATTCCTCCTCACATCACAAGTCAGATTTTTTCCTTTCTGTATGAACTCACGAATTCGGAAAATATTTCTGTCTAAACTGGAAAACCATGAAACATTCTTTTAGGTTCGTTTCTTAGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTGTCTGATCACCTATCTCA</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCTTACAGTGTTTGCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAACTGTCTGATCACCTATCTCAGTTTATTTTTCTTCTTCCTGTTTGCTCTTGATTATTTTCTTATTTAACTCCTTTCAAATAATATGACTTTCTATTATTTTTTTTTGCTCCTCCCACTTTTCTCAACCATTTTCTGAATCCTAGAAATTCAACGTTGTTATTGTGTTGTCCTTTTTCTTCTTCTATTCTGCCTTTCTTCGCTTCAATGTCTCCCGGCTGTTTCTGAAAGCAAACACTGTAAGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>AAACTGTCTGATCACCTATCTCAGTTTATTTTTCTTCTTCCTGTTTGCTCTTGATTATTTTCTTATTTAACTCCTTTCAAATAATATGACTTTCTATTATTTTTTTTTGCTCCTCCCACTTTTCTCAACCATTTTCTGAATCCTMGAAATTCAACGTTGTTATTGTGTTGTCCTTTTTCTTCTTCTATTCTGCCTTTCTTCGCTTCAATGTCTCCCGGCTGTTTCTGAAAGCAAACACTGTAAGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28835</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>351694</contig_pos>
        <strand></strand>
        <context>ataaaaaacg[A/T]tgtactagtt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATATCAAAAAGTAGTCGAATGACACAACATTTATCATAAGATAAAAAACG</left_flank>
        <right_flank>TGTACTAGTTGACTACTTTTTGATACCTTATACAGGAACCGAGATAAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCGTCAATCATAGAAGGCAAGTTTTAGTTAGAAAGTTTCTAGAAAAATAGGACATCAAAGCGTTTGCCGTTAGCCTGTTTGCCACCCCATTCTCGTATATTTGTGTGTCTTTCTTTTTGAGTTTTTTAACGATTTATTAAAAATCCCTGGTTTCCAGGTGTCCTCGATAGGCCAATTAGGGATAATGGGGTGGCAAATGGCGGCGATCAAATACGAGAGAGATCGAGCGGCAAACACTTTGTTACCAAATTATAATACTTATGGAAGATTTGATGTTCCTTCGTATTTTGAAAGTTATTGGCAGACTCCTGAAGAGAGATATTATACAGGTAAGGTGAAATTGCAGAAAAAAGGAAATTCGATGTCTTCTAGATTACTGTAAACACACTAATAGAACGACCCGTATTTCTTTGAACTTTGAGTCAATTTATCTCATTTCCTGTAGAAGATATCAAAAAGTAGTCGAATGACACAACATTTATCATAAGATAAAAAACGATGTACTAGTTGACTACTTTTTGATACCTTATACAGGAACCGAGATAAATTGGCTCAAAGTTAAGATGTCGTCAGCCGACCACCTTTCTCGGTCGGCATGCGCCGACTTGACAGTTTTGAGCCTATTTATCTCATTTGCTGTGGAAGATATAATAAAGTAGTCAACAGATAAAATGTTCAACATAATATCACAAACATTTTATCAGTTGATCACTTTTTGATATCTCTTACAGAAAATGAGATATATGTGCTTAAAGTTAAAGGTCTGGGGGACACGGTATTTTTTGAGCCAATTCAATCCCTTCCAAATCCAATTTCAGAAATAATTTCTTCAAAAATCATGTTATGTGCATTCGAAAAAGTTTATTTGAAGGCATATAAAAATATTCAATTCTGCCAGAAACTAGAGAAAACATTCTGAAAATTCAAAAACTTCAATCTTTTGAAATCTATCTATAAGTTGGATGTGATTTCTAAAAAACGTCAATTTTAAAATTCTGT</canonical>
            <polymorphic>CGCGTCAATCATAGAAGGCAAGTTTTAGTTAGAAAGTTTCTAGAAAAATAGGACATCAAAGCGTTTGCCGTTAGCCTGTTTGCCACCCCATTCTCGTATATTTGTGTGTCTTTCTTTTTGAGTTTTTTAACGATTTATTAAAAATCCCTGGTTTCCAGGTGTCCTCGATAGGCCAATTAGGGATAATGGGGTGGCAAATGGCGGCGATCAAATACGAGAGAGATCGAGCGGCAAACACTTTGTTACCAAATTATAATACTTATGGAAGATTTGATGTTCCTTCGTATTTTGAAAGTTATTGGCAGACTCCTGAAGAGAGATATTATACAGGTAAGGTGAAATTGCAGAAAAAAGGAAATTCGATGTCTTCTAGATTACTGTAAACACACTAATAGAACGACCCGTATTTCTTTGAACTTTGAGTCAATTTATCTCATTTCCTGTAGAAGATATCAAAAAGTAGTCGAATGACACAACATTTATCATAAGATAAAAAACGWTGTACTAGTTGACTACTTTTTGATACCTTATACAGGAACCGAGATAAATTGGCTCAAAGTTAAGATGTCGTCAGCCGACCACCTTTCTCGGTCGGCATGCGCCGACTTGACAGTTTTGAGCCTATTTATCTCATTTGCTGTGGAAGATATAATAAAGTAGTCAACAGATAAAATGTTCAACATAATATCACAAACATTTTATCAGTTGATCACTTTTTGATATCTCTTACAGAAAATGAGATATATGTGCTTAAAGTTAAAGGTCTGGGGGACACGGTATTTTTTGAGCCAATTCAATCCCTTCCAAATCCAATTTCAGAAATAATTTCTTCAAAAATCATGTTATGTGCATTCGAAAAAGTTTATTTGAAGGCATATAAAAATATTCAATTCTGCCAGAAACTAGAGAAAACATTCTGAAAATTCAAAAACTTCAATCTTTTGAAATCTATCTATAAGTTGGATGTGATTTCTAAAAAACGTCAATTTTAAAATTCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGGTGAAATTGCAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GCACATAACATGATTTTTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>519</pcr_amplicon_size>
		<canonical_amplicon>TAAGGTGAAATTGCAGAAAAAAGGAAATTCGATGTCTTCTAGATTACTGTAAACACACTAATAGAACGACCCGTATTTCTTTGAACTTTGAGTCAATTTATCTCATTTCCTGTAGAAGATATCAAAAAGTAGTCGAATGACACAACATTTATCATAAGATAAAAAACGATGTACTAGTTGACTACTTTTTGATACCTTATACAGGAACCGAGATAAATTGGCTCAAAGTTAAGATGTCGTCAGCCGACCACCTTTCTCGGTCGGCATGCGCCGACTTGACAGTTTTGAGCCTATTTATCTCATTTGCTGTGGAAGATATAATAAAGTAGTCAACAGATAAAATGTTCAACATAATATCACAAACATTTTATCAGTTGATCACTTTTTGATATCTCTTACAGAAAATGAGATATATGTGCTTAAAGTTAAAGGTCTGGGGGACACGGTATTTTTTGAGCCAATTCAATCCCTTCCAAATCCAATTTCAGAAATAATTTCTTCAAAAATCATGTTATGTGC</canonical_amplicon>
		<polymorphic_amplicon>TAAGGTGAAATTGCAGAAAAAAGGAAATTCGATGTCTTCTAGATTACTGTAAACACACTAATAGAACGACCCGTATTTCTTTGAACTTTGAGTCAATTTATCTCATTTCCTGTAGAAGATATCAAAAAGTAGTCGAATGACACAACATTTATCATAAGATAAAAAACGWTGTACTAGTTGACTACTTTTTGATACCTTATACAGGAACCGAGATAAATTGGCTCAAAGTTAAGATGTCGTCAGCCGACCACCTTTCTCGGTCGGCATGCGCCGACTTGACAGTTTTGAGCCTATTTATCTCATTTGCTGTGGAAGATATAATAAAGTAGTCAACAGATAAAATGTTCAACATAATATCACAAACATTTTATCAGTTGATCACTTTTTGATATCTCTTACAGAAAATGAGATATATGTGCTTAAAGTTAAAGGTCTGGGGGACACGGTATTTTTTGAGCCAATTCAATCCCTTCCAAATCCAATTTCAGAAATAATTTCTTCAAAAATCATGTTATGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28836</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>351710</contig_pos>
        <strand></strand>
        <context>tagttgacta[C/T]tttttgatac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAATGACACAACATTTATCATAAGATAAAAAACGATGTACTAGTTGACTA</left_flank>
        <right_flank>TTTTTGATACCTTATACAGGAACCGAGATAAATTGGCTCAAAGTTAAGAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCAAGTTTTAGTTAGAAAGTTTCTAGAAAAATAGGACATCAAAGCGTTTGCCGTTAGCCTGTTTGCCACCCCATTCTCGTATATTTGTGTGTCTTTCTTTTTGAGTTTTTTAACGATTTATTAAAAATCCCTGGTTTCCAGGTGTCCTCGATAGGCCAATTAGGGATAATGGGGTGGCAAATGGCGGCGATCAAATACGAGAGAGATCGAGCGGCAAACACTTTGTTACCAAATTATAATACTTATGGAAGATTTGATGTTCCTTCGTATTTTGAAAGTTATTGGCAGACTCCTGAAGAGAGATATTATACAGGTAAGGTGAAATTGCAGAAAAAAGGAAATTCGATGTCTTCTAGATTACTGTAAACACACTAATAGAACGACCCGTATTTCTTTGAACTTTGAGTCAATTTATCTCATTTCCTGTAGAAGATATCAAAAAGTAGTCGAATGACACAACATTTATCATAAGATAAAAAACGATGTACTAGTTGACTACTTTTTGATACCTTATACAGGAACCGAGATAAATTGGCTCAAAGTTAAGATGTCGTCAGCCGACCACCTTTCTCGGTCGGCATGCGCCGACTTGACAGTTTTGAGCCTATTTATCTCATTTGCTGTGGAAGATATAATAAAGTAGTCAACAGATAAAATGTTCAACATAATATCACAAACATTTTATCAGTTGATCACTTTTTGATATCTCTTACAGAAAATGAGATATATGTGCTTAAAGTTAAAGGTCTGGGGGACACGGTATTTTTTGAGCCAATTCAATCCCTTCCAAATCCAATTTCAGAAATAATTTCTTCAAAAATCATGTTATGTGCATTCGAAAAAGTTTATTTGAAGGCATATAAAAATATTCAATTCTGCCAGAAACTAGAGAAAACATTCTGAAAATTCAAAAACTTCAATCTTTTGAAATCTATCTATAAGTTGGATGTGATTTCTAAAAAACGTCAATTTTAAAATTCTGTCAAAATTTTCAGCAAG</canonical>
            <polymorphic>GGCAAGTTTTAGTTAGAAAGTTTCTAGAAAAATAGGACATCAAAGCGTTTGCCGTTAGCCTGTTTGCCACCCCATTCTCGTATATTTGTGTGTCTTTCTTTTTGAGTTTTTTAACGATTTATTAAAAATCCCTGGTTTCCAGGTGTCCTCGATAGGCCAATTAGGGATAATGGGGTGGCAAATGGCGGCGATCAAATACGAGAGAGATCGAGCGGCAAACACTTTGTTACCAAATTATAATACTTATGGAAGATTTGATGTTCCTTCGTATTTTGAAAGTTATTGGCAGACTCCTGAAGAGAGATATTATACAGGTAAGGTGAAATTGCAGAAAAAAGGAAATTCGATGTCTTCTAGATTACTGTAAACACACTAATAGAACGACCCGTATTTCTTTGAACTTTGAGTCAATTTATCTCATTTCCTGTAGAAGATATCAAAAAGTAGTCGAATGACACAACATTTATCATAAGATAAAAAACGATGTACTAGTTGACTAYTTTTTGATACCTTATACAGGAACCGAGATAAATTGGCTCAAAGTTAAGATGTCGTCAGCCGACCACCTTTCTCGGTCGGCATGCGCCGACTTGACAGTTTTGAGCCTATTTATCTCATTTGCTGTGGAAGATATAATAAAGTAGTCAACAGATAAAATGTTCAACATAATATCACAAACATTTTATCAGTTGATCACTTTTTGATATCTCTTACAGAAAATGAGATATATGTGCTTAAAGTTAAAGGTCTGGGGGACACGGTATTTTTTGAGCCAATTCAATCCCTTCCAAATCCAATTTCAGAAATAATTTCTTCAAAAATCATGTTATGTGCATTCGAAAAAGTTTATTTGAAGGCATATAAAAATATTCAATTCTGCCAGAAACTAGAGAAAACATTCTGAAAATTCAAAAACTTCAATCTTTTGAAATCTATCTATAAGTTGGATGTGATTTCTAAAAAACGTCAATTTTAAAATTCTGTCAAAATTTTCAGCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGGTGAAATTGCAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GCACATAACATGATTTTTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>519</pcr_amplicon_size>
		<canonical_amplicon>TAAGGTGAAATTGCAGAAAAAAGGAAATTCGATGTCTTCTAGATTACTGTAAACACACTAATAGAACGACCCGTATTTCTTTGAACTTTGAGTCAATTTATCTCATTTCCTGTAGAAGATATCAAAAAGTAGTCGAATGACACAACATTTATCATAAGATAAAAAACGATGTACTAGTTGACTACTTTTTGATACCTTATACAGGAACCGAGATAAATTGGCTCAAAGTTAAGATGTCGTCAGCCGACCACCTTTCTCGGTCGGCATGCGCCGACTTGACAGTTTTGAGCCTATTTATCTCATTTGCTGTGGAAGATATAATAAAGTAGTCAACAGATAAAATGTTCAACATAATATCACAAACATTTTATCAGTTGATCACTTTTTGATATCTCTTACAGAAAATGAGATATATGTGCTTAAAGTTAAAGGTCTGGGGGACACGGTATTTTTTGAGCCAATTCAATCCCTTCCAAATCCAATTTCAGAAATAATTTCTTCAAAAATCATGTTATGTGC</canonical_amplicon>
		<polymorphic_amplicon>TAAGGTGAAATTGCAGAAAAAAGGAAATTCGATGTCTTCTAGATTACTGTAAACACACTAATAGAACGACCCGTATTTCTTTGAACTTTGAGTCAATTTATCTCATTTCCTGTAGAAGATATCAAAAAGTAGTCGAATGACACAACATTTATCATAAGATAAAAAACGATGTACTAGTTGACTAYTTTTTGATACCTTATACAGGAACCGAGATAAATTGGCTCAAAGTTAAGATGTCGTCAGCCGACCACCTTTCTCGGTCGGCATGCGCCGACTTGACAGTTTTGAGCCTATTTATCTCATTTGCTGTGGAAGATATAATAAAGTAGTCAACAGATAAAATGTTCAACATAATATCACAAACATTTTATCAGTTGATCACTTTTTGATATCTCTTACAGAAAATGAGATATATGTGCTTAAAGTTAAAGGTCTGGGGGACACGGTATTTTTTGAGCCAATTCAATCCCTTCCAAATCCAATTTCAGAAATAATTTCTTCAAAAATCATGTTATGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28837</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>354020</contig_pos>
        <strand>+</strand>
        <context>agagagagag[C/G]gagagakaAG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG</left_flank>
        <right_flank>GAGAGAGAAGTTTAGAAATAATATTTTCAGCATTCACGATCAGTACCATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCAAAAGTCAAGAACATTCGAGTAATCGACGACGATCCAGTTGGATCCTGGGTTCGAGATCAGCAGTCGATAGGTACAGTTTTGTGTGATCCTGCTTTCTTCTCTTTTTCTTTTCCACCCTCCTCTAACTGCATGCACTCTCAGTTTCGAACGGTTTCTCATTTTCAGCGATGCTTTCAGAACGGGGACATGAGGCGAGAAGCGAGCCGATTACTGTGAGCAAACAGGTTCAACCAACTACTCTTCAGGTAAGAAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGTTTAGAAATAATATTTTCAGCATTCACGATCAGTACCATCGCTGCACGGAGGAACTCTTGTTTCCCACAGGGATTGTGATCATCGGGATGATAAGCACAGATCCTCCTCTCGCGACGAAAATCCAGAAGTCGTCATGAGTACGATGACTATTCTTCTGAATCCGATCCATCTGATTTCACACGCCAACATCGTCATCGATCGAGTAGTAAACGAAGACACAGAAGTCGTTCTCGATTCGATGAATCTGTTACCAACTATGATTCTGAATTGGATAGAGACCGAGAGAGACGACGGTCAAAGAGACACAGACACGGTGGAAGTCAGAGGAGTTCTTCCAGAAAACAACGGGATGACCGAGGAAGAGACAGAGATCGAGAGAGGGATAGAGAAAGAGAGAAAGAACGAGAAAGGAGAGATCGGGAAAGGGAGAGAGAGGAGAGAGAAAGAGATAATCGAGAGAACGAACGAAGAAGGAGAGATAGAGAAGAT</canonical>
            <polymorphic>GCCAAAAGTCAAGAACATTCGAGTAATCGACGACGATCCAGTTGGATCCTGGGTTCGAGATCAGCAGTCGATAGGTACAGTTTTGTGTGATCCTGCTTTCTTCTCTTTTTCTTTTCCACCCTCCTCTAACTGCATGCACTCTCAGTTTCGAACGGTTTCTCATTTTCAGCGATGCTTTCAGAACGGGGACATGAGGCGAGAAGCGAGCCGATTACTGTGAGCAAACAGGTTCAACCAACTACTCTTCAGGTAAGAAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGSGAGAGAGAAGTTTAGAAATAATATTTTCAGCATTCACGATCAGTACCATCGCTGCACGGAGGAACTCTTGTTTCCCACAGGGATTGTGATCATCGGGATGATAAGCACAGATCCTCCTCTCGCGACGAAAATCCAGAAGTCGTCATGAGTACGATGACTATTCTTCTGAATCCGATCCATCTGATTTCACACGCCAACATCGTCATCGATCGAGTAGTAAACGAAGACACAGAAGTCGTTCTCGATTCGATGAATCTGTTACCAACTATGATTCTGAATTGGATAGAGACCGAGAGAGACGACGGTCAAAGAGACACAGACACGGTGGAAGTCAGAGGAGTTCTTCCAGAAAACAACGGGATGACCGAGGAAGAGACAGAGATCGAGAGAGGGATAGAGAAAGAGAGAAAGAACGAGAAAGGAGAGATCGGGAAAGGGAGAGAGAGGAGAGAGAAAGAGATAATCGAGAGAACGAACGAAGAAGGAGAGATAGAGAAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACCAACTACTCTTCAGGTAAG</pcr_primer_p1>
		<pcr_primer_p2>CGATGGTACTGATCGTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>CAACCAACTACTCTTCAGGTAAGAAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGTTTAGAAATAATATTTTCAGCATTCACGATCAGTACCATCG</canonical_amplicon>
		<polymorphic_amplicon>CAACCAACTACTCTTCAGGTAAGAAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGSGAGAGAGAAGTTTAGAAATAATATTTTCAGCATTCACGATCAGTACCATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28838</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>354027</contig_pos>
        <strand></strand>
        <context>gagsgagaga[G/T]aAGTTTASAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA</left_flank>
        <right_flank>AAGTTTAGAAATAATATTTTCAGCATTCACGATCAGTACCATCGCTGCAC</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCAAGAACATTCGAGTAATCGACGACGATCCAGTTGGATCCTGGGTTCGAGATCAGCAGTCGATAGGTACAGTTTTGTGTGATCCTGCTTTCTTCTCTTTTTCTTTTCCACCCTCCTCTAACTGCATGCACTCTCAGTTTCGAACGGTTTCTCATTTTCAGCGATGCTTTCAGAACGGGGACATGAGGCGAGAAGCGAGCCGATTACTGTGAGCAAACAGGTTCAACCAACTACTCTTCAGGTAAGAAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGTTTAGAAATAATATTTTCAGCATTCACGATCAGTACCATCGCTGCACGGAGGAACTCTTGTTTCCCACAGGGATTGTGATCATCGGGATGATAAGCACAGATCCTCCTCTCGCGACGAAAATCCAGAAGTCGTCATGAGTACGATGACTATTCTTCTGAATCCGATCCATCTGATTTCACACGCCAACATCGTCATCGATCGAGTAGTAAACGAAGACACAGAAGTCGTTCTCGATTCGATGAATCTGTTACCAACTATGATTCTGAATTGGATAGAGACCGAGAGAGACGACGGTCAAAGAGACACAGACACGGTGGAAGTCAGAGGAGTTCTTCCAGAAAACAACGGGATGACCGAGGAAGAGACAGAGATCGAGAGAGGGATAGAGAAAGAGAGAAAGAACGAGAAAGGAGAGATCGGGAAAGGGAGAGAGAGGAGAGAGAAAGAGATAATCGAGAGAACGAACGAAGAAGGAGAGATAGAGAAGATAGAGAAA</canonical>
            <polymorphic>GTCAAGAACATTCGAGTAATCGACGACGATCCAGTTGGATCCTGGGTTCGAGATCAGCAGTCGATAGGTACAGTTTTGTGTGATCCTGCTTTCTTCTCTTTTTCTTTTCCACCCTCCTCTAACTGCATGCACTCTCAGTTTCGAACGGTTTCTCATTTTCAGCGATGCTTTCAGAACGGGGACATGAGGCGAGAAGCGAGCCGATTACTGTGAGCAAACAGGTTCAACCAACTACTCTTCAGGTAAGAAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAKAAGTTTAGAAATAATATTTTCAGCATTCACGATCAGTACCATCGCTGCACGGAGGAACTCTTGTTTCCCACAGGGATTGTGATCATCGGGATGATAAGCACAGATCCTCCTCTCGCGACGAAAATCCAGAAGTCGTCATGAGTACGATGACTATTCTTCTGAATCCGATCCATCTGATTTCACACGCCAACATCGTCATCGATCGAGTAGTAAACGAAGACACAGAAGTCGTTCTCGATTCGATGAATCTGTTACCAACTATGATTCTGAATTGGATAGAGACCGAGAGAGACGACGGTCAAAGAGACACAGACACGGTGGAAGTCAGAGGAGTTCTTCCAGAAAACAACGGGATGACCGAGGAAGAGACAGAGATCGAGAGAGGGATAGAGAAAGAGAGAAAGAACGAGAAAGGAGAGATCGGGAAAGGGAGAGAGAGGAGAGAGAAAGAGATAATCGAGAGAACGAACGAAGAAGGAGAGATAGAGAAGATAGAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACCAACTACTCTTCAGGTAAG</pcr_primer_p1>
		<pcr_primer_p2>GTGGGAAACAAGAGTTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>CAACCAACTACTCTTCAGGTAAGAAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGTTTAGAAATAATATTTTCAGCATTCACGATCAGTACCATCGCTGCACGGAGGAACTCTTGTTTCCCAC</canonical_amplicon>
		<polymorphic_amplicon>CAACCAACTACTCTTCAGGTAAGAAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAKAAGTTTAGAAATAATATTTTCAGCATTCACGATCAGTACCATCGCTGCACGGAGGAACTCTTGTTTCCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28839</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>354035</contig_pos>
        <strand></strand>
        <context>gakaAGTTTA[G/C]AAATAATATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGTTTA</left_flank>
        <right_flank>AAATAATATTTTCAGCATTCACGATCAGTACCATCGCTGCACGGAGGAAC</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTCGAGTAATCGACGACGATCCAGTTGGATCCTGGGTTCGAGATCAGCAGTCGATAGGTACAGTTTTGTGTGATCCTGCTTTCTTCTCTTTTTCTTTTCCACCCTCCTCTAACTGCATGCACTCTCAGTTTCGAACGGTTTCTCATTTTCAGCGATGCTTTCAGAACGGGGACATGAGGCGAGAAGCGAGCCGATTACTGTGAGCAAACAGGTTCAACCAACTACTCTTCAGGTAAGAAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGTTTAGAAATAATATTTTCAGCATTCACGATCAGTACCATCGCTGCACGGAGGAACTCTTGTTTCCCACAGGGATTGTGATCATCGGGATGATAAGCACAGATCCTCCTCTCGCGACGAAAATCCAGAAGTCGTCATGAGTACGATGACTATTCTTCTGAATCCGATCCATCTGATTTCACACGCCAACATCGTCATCGATCGAGTAGTAAACGAAGACACAGAAGTCGTTCTCGATTCGATGAATCTGTTACCAACTATGATTCTGAATTGGATAGAGACCGAGAGAGACGACGGTCAAAGAGACACAGACACGGTGGAAGTCAGAGGAGTTCTTCCAGAAAACAACGGGATGACCGAGGAAGAGACAGAGATCGAGAGAGGGATAGAGAAAGAGAGAAAGAACGAGAAAGGAGAGATCGGGAAAGGGAGAGAGAGGAGAGAGAAAGAGATAATCGAGAGAACGAACGAAGAAGGAGAGATAGAGAAGATAGAGAAAGTGAAGTG</canonical>
            <polymorphic>CATTCGAGTAATCGACGACGATCCAGTTGGATCCTGGGTTCGAGATCAGCAGTCGATAGGTACAGTTTTGTGTGATCCTGCTTTCTTCTCTTTTTCTTTTCCACCCTCCTCTAACTGCATGCACTCTCAGTTTCGAACGGTTTCTCATTTTCAGCGATGCTTTCAGAACGGGGACATGAGGCGAGAAGCGAGCCGATTACTGTGAGCAAACAGGTTCAACCAACTACTCTTCAGGTAAGAAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGTTTASAAATAATATTTTCAGCATTCACGATCAGTACCATCGCTGCACGGAGGAACTCTTGTTTCCCACAGGGATTGTGATCATCGGGATGATAAGCACAGATCCTCCTCTCGCGACGAAAATCCAGAAGTCGTCATGAGTACGATGACTATTCTTCTGAATCCGATCCATCTGATTTCACACGCCAACATCGTCATCGATCGAGTAGTAAACGAAGACACAGAAGTCGTTCTCGATTCGATGAATCTGTTACCAACTATGATTCTGAATTGGATAGAGACCGAGAGAGACGACGGTCAAAGAGACACAGACACGGTGGAAGTCAGAGGAGTTCTTCCAGAAAACAACGGGATGACCGAGGAAGAGACAGAGATCGAGAGAGGGATAGAGAAAGAGAGAAAGAACGAGAAAGGAGAGATCGGGAAAGGGAGAGAGAGGAGAGAGAAAGAGATAATCGAGAGAACGAACGAAGAAGGAGAGATAGAGAAGATAGAGAAAGTGAAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACCAACTACTCTTCAGGTAAG</pcr_primer_p1>
		<pcr_primer_p2>GTGGGAAACAAGAGTTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>CAACCAACTACTCTTCAGGTAAGAAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGTTTAGAAATAATATTTTCAGCATTCACGATCAGTACCATCGCTGCACGGAGGAACTCTTGTTTCCCAC</canonical_amplicon>
		<polymorphic_amplicon>CAACCAACTACTCTTCAGGTAAGAAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGTTTASAAATAATATTTTCAGCATTCACGATCAGTACCATCGCTGCACGGAGGAACTCTTGTTTCCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28840</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>388484</contig_pos>
        <strand>+</strand>
        <context>CAAATGTGGA[G/T]GACAGTTCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTCCAGGTCGGGACGATTTGATTTCCGCAATGTGTTTGTCAAATGTGGA</left_flank>
        <right_flank>GACAGTTCTTGACTCAATCCGATATCCGTGAACATGCGAGAGAGTTTGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTCAATCGGACAATAGAATCGGTGGTCAATGCTTGATCATCACAGGTGAGAATCGACACATCGAGAATTGTACGGAGCGTTTTGAGAAGATAATCACCGGAAACTCCAATCTCTTCTCCAATATCCTTAACAGAAATCGCATCCCGTCGTTCAAAGCAAAGAACTGCTGCCATTTGATAAACATACATTTGTGCAACATACTGTTTGTCCAGATATGTAAGACGAACATCTCCTTGTGACATGTTATACAACCAAGTCAGTTTGCGTCCATTATGTTTTCCAGTGTAGAACGTTTCAAATTCTTGAATAACAGGCAATAGAACATATGGCAAATGGAAATCGGCGACGTCTTGAGCGGTTTGTTGGTTTGTATTGGTGCTCAGCTGAGGTGCATTCAGTGGCCAGCTTCCAGCTTGAAGTACCAAAGCTTGGGTTGGCACAAACTTTGTTCCAGGTCGGGACGATTTGATTTCCGCAATGTGTTTGTCAAATGTGGAGGACAGTTCTTGACTCAATCCGATATCCGTGAACATGCGAGAGAGTTTGCTGGTGAATTCGTAGCCACACGCCTGCTTCAGCTTATTTATCATCACTTCCTCAGCATCCATTGAAACTGAAGTGCTAGCTATGAGACGATTGGCAAGCATTTTAGAATAAAACTTCTGGAAGATATCCTTGTCTTCGATGTAGCGGAAAATGACTATTGCGTTTCCAAGTTTCGTTTCCAAATCTGACTCAGACAGCCCTTTGGTCGACTTCTTTAACAAACTGTCGGTGTATCGAGCAAGTCTTTCACTAGCTTTTGGAACAGTCTGTCCAAACTCCTTCGAATTTACAACTCCTTGAAGAGCCTTATCAAGTCCACTTGAAAACTCGCCATCTTCCATAAACACAACGGTTTTCATATCGTTGAACTTATTGTACACTTTCAAAACGTTCTCGACGAACTGTTGAGGAACATTCTCTCCGGTAAGCCCAGAAACCGCCTCGAGTCCCTT</canonical>
            <polymorphic>TGTTCAATCGGACAATAGAATCGGTGGTCAATGCTTGATCATCACAGGTGAGAATCGACACATCGAGAATTGTACGGAGCGTTTTGAGAAGATAATCACCGGAAACTCCAATCTCTTCTCCAATATCCTTAACAGAAATCGCATCCCGTCGTTCAAAGCAAAGAACTGCTGCCATTTGATAAACATACATTTGTGCAACATACTGTTTGTCCAGATATGTAAGACGAACATCTCCTTGTGACATGTTATACAACCAAGTCAGTTTGCGTCCATTATGTTTTCCAGTGTAGAACGTTTCAAATTCTTGAATAACAGGCAATAGAACATATGGCAAATGGAAATCGGCGACGTCTTGAGCGGTTTGTTGGTTTGTATTGGTGCTCAGCTGAGGTGCATTCAGTGGCCAGCTTCCAGCTTGAAGTACCAAAGCTTGGGTTGGCACAAACTTTGTTCCAGGTCGGGACGATTTGATTTCCGCAATGTGTTTGTCAAATGTGGAKGACAGTTCTTGACTCAATCCGATATCCGTGAACATGCGAGAGAGTTTGCTGGTGAATTCGTAGCCACACGCCTGCTTCAGCTTATTTATCATCACTTCCTCAGCATCCATTGAAACTGAAGTGCTAGCTATGAGACGATTGGCAAGCATTTTAGAATAAAACTTCTGGAAGATATCCTTGTCTTCGATGTAGCGGAAAATGACTATTGCGTTTCCAAGTTTCGTTTCCAAATCTGACTCAGACAGCCCTTTGGTCGACTTCTTTAACAAACTGTCGGTGTATCGAGCAAGTCTTTCACTAGCTTTTGGAACAGTCTGTCCAAACTCCTTCGAATTTACAACTCCTTGAAGAGCCTTATCAAGTCCACTTGAAAACTCGCCATCTTCCATAAACACAACGGTTTTCATATCGTTGAACTTATTGTACACTTTCAAAACGTTCTCGACGAACTGTTGAGGAACATTCTCTCCGGTAAGCCCAGAAACCGCCTCGAGTCCCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAATAACAGGCAATAGAACAT</pcr_primer_p1>
		<pcr_primer_p2>AATTCACCAGCAAACTCTCTC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTGAATAACAGGCAATAGAACATATGGCAAATGGAAATCGGCGACGTCTTGAGCGGTTTGTTGGTTTGTATTGGTGCTCAGCTGAGGTGCATTCAGTGGCCAGCTTCCAGCTTGAAGTACCAAAGCTTGGGTTGGCACAAACTTTGTTCCAGGTCGGGACGATTTGATTTCCGCAATGTGTTTGTCAAATGTGGAGGACAGTTCTTGACTCAATCCGATATCCGTGAACATGCGAGAGAGTTTGCTGGTGAATT</canonical_amplicon>
		<polymorphic_amplicon>TTGAATAACAGGCAATAGAACATATGGCAAATGGAAATCGGCGACGTCTTGAGCGGTTTGTTGGTTTGTATTGGTGCTCAGCTGAGGTGCATTCAGTGGCCAGCTTCCAGCTTGAAGTACCAAAGCTTGGGTTGGCACAAACTTTGTTCCAGGTCGGGACGATTTGATTTCCGCAATGTGTTTGTCAAATGTGGAKGACAGTTCTTGACTCAATCCGATATCCGTGAACATGCGAGAGAGTTTGCTGGTGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28841</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>429387</contig_pos>
        <strand>+</strand>
        <context>CCATTTTGGA[C/T]CAAATAAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGATGTTTTTCTTGCTTCAATTTTTTTTTAATGCACCCTTCCATTTTGGA</left_flank>
        <right_flank>CAAATAAATTTTTCATGCTGAAAAAAGACTTCAAATTTTAACGAACCAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAACCCTGCACTTTCAAAATCTCCGTCATCACCTCATTCAGATGATTCTTCGAAATCAAAGAATACGTCAAGTGATGATGATGATTCTAAGCCTGTCAACTTTTCGAATAGTCCCTCTTCAAGTTCACCATCTCCATATTCCACAGATTCATGATTCTCTTTTTTCTATTTTCCATTTTTTGAAAAAAAAATGCCATTCCCTTTTTTTGCTTTCGTCTCTCATTCTACAAACAATCTCTGACAAATTGACGGTGAAAAATGCCCCCTTCTTATGTAGATTATTTTTCTTTCATGCACCCATTCTTCTTTTTTTCTGTTAATTACTTTTCCTCAAGCAAACGACTTGCAGATGAGCTCTGCCGAAACGCTCCAGATTTTGGAGATTTTTAAAGTGAATTCAAAAAATACAGTAGAGCGCGTTCACAAGCCGTTTGCCTGACCTATAATTTGATGTTTTTCTTGCTTCAATTTTTTTTTAATGCACCCTTCCATTTTGGACCAAATAAATTTTTCATGCTGAAAAAAGACTTCAAATTTTAACGAACCAAGTACTCAACATTTTCAGACAAACTTCCAAAATCTGCACTCAAAGCAGACGTTTAAAATTTCAAAAAAAAAAATTGAAGAAGAAATTAAAGAAGATACCGTAACACTCTAATAGAAGGCCACTCGATACTTGAATTTTGAGCTCAATTACCTCAATTTCGATAAGAGATGATAAAAATTTGTCAACTGATAAAATGTTTATCATGATATCATCAACATTTTATTAGTTGGCGCATTTTTGATACCTCTTATAGTAACCAAGATAACTGAGCTCAAAGTGCAAGCATAGGAGGACCTTCTATTAGAGTGCTTACGGTATCCTACTATTTCCTTTGAAGTAACGAGTAATTTAGACTAATATGAAAAAAATTGCTTTTCAAATCTTTCAAAACCAAAACTTTGATAGTCTTTAAGAAGTACAGTAATCCGTTCTCTGAAAGGTAAGTGCATTTT</canonical>
            <polymorphic>CAAACCCTGCACTTTCAAAATCTCCGTCATCACCTCATTCAGATGATTCTTCGAAATCAAAGAATACGTCAAGTGATGATGATGATTCTAAGCCTGTCAACTTTTCGAATAGTCCCTCTTCAAGTTCACCATCTCCATATTCCACAGATTCATGATTCTCTTTTTTCTATTTTCCATTTTTTGAAAAAAAAATGCCATTCCCTTTTTTTGCTTTCGTCTCTCATTCTACAAACAATCTCTGACAAATTGACGGTGAAAAATGCCCCCTTCTTATGTAGATTATTTTTCTTTCATGCACCCATTCTTCTTTTTTTCTGTTAATTACTTTTCCTCAAGCAAACGACTTGCAGATGAGCTCTGCCGAAACGCTCCAGATTTTGGAGATTTTTAAAGTGAATTCAAAAAATACAGTAGAGCGCGTTCACAAGCCGTTTGCCTGACCTATAATTTGATGTTTTTCTTGCTTCAATTTTTTTTTAATGCACCCTTCCATTTTGGAYCAAATAAATTTTTCATGCTGAAAAAAGACTTCAAATTTTAACGAACCAAGTACTCAACATTTTCAGACAAACTTCCAAAATCTGCACTCAAAGCAGACGTTTAAAATTTCAAAAAAAAAAATTGAAGAAGAAATTAAAGAAGATACCGTAACACTCTAATAGAAGGCCACTCGATACTTGAATTTTGAGCTCAATTACCTCAATTTCGATAAGAGATGATAAAAATTTGTCAACTGATAAAATGTTTATCATGATATCATCAACATTTTATTAGTTGGCGCATTTTTGATACCTCTTATAGTAACCAAGATAACTGAGCTCAAAGTGCAAGCATAGGAGGACCTTCTATTAGAGTGCTTACGGTATCCTACTATTTCCTTTGAAGTAACGAGTAATTTAGACTAATATGAAAAAAATTGCTTTTCAAATCTTTCAAAACCAAAACTTTGATAGTCTTTAAGAAGTACAGTAATCCGTTCTCTGAAAGGTAAGTGCATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>497 342 161</canonical_bands>
                <polymorphic_bands>839 161</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>497 342 161</canonical_bands>
                <polymorphic_bands>839 161</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTGTTAATTACTTTTCCTCAA</pcr_primer_p1>
		<pcr_primer_p2>AATGTTGAGTACTTGGTTCGTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCTGTTAATTACTTTTCCTCAAGCAAACGACTTGCAGATGAGCTCTGCCGAAACGCTCCAGATTTTGGAGATTTTTAAAGTGAATTCAAAAAATACAGTAGAGCGCGTTCACAAGCCGTTTGCCTGACCTATAATTTGATGTTTTTCTTGCTTCAATTTTTTTTTAATGCACCCTTCCATTTTGGACCAAATAAATTTTTCATGCTGAAAAAAGACTTCAAATTTTAACGAACCAAGTACTCAACATT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTGTTAATTACTTTTCCTCAAGCAAACGACTTGCAGATGAGCTCTGCCGAAACGCTCCAGATTTTGGAGATTTTTAAAGTGAATTCAAAAAATACAGTAGAGCGCGTTCACAAGCCGTTTGCCTGACCTATAATTTGATGTTTTTCTTGCTTCAATTTTTTTTTAATGCACCCTTCCATTTTGGAYCAAATAAATTTTTCATGCTGAAAAAAGACTTCAAATTTTAACGAACCAAGTACTCAACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28842</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>429852</contig_pos>
        <strand>+</strand>
        <context>CTTTAAGAAG[C/T]ACAGTAATCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTGCTTTTCAAATCTTTCAAAACCAAAACTTTGATAGTCTTTAAGAAG</left_flank>
        <right_flank>ACAGTAATCCGTTCTCTGAAAGGTAAGTGCATTTTTTCATCTGTCTGCTT</right_flank>
        <qual_score>145</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAATTTTTTTTTAATGCACCCTTCCATTTTGGACCAAATAAATTTTTCATGCTGAAAAAAGACTTCAAATTTTAACGAACCAAGTACTCAACATTTTCAGACAAACTTCCAAAATCTGCACTCAAAGCAGACGTTTAAAATTTCAAAAAAAAAAATTGAAGAAGAAATTAAAGAAGATACCGTAACACTCTAATAGAAGGCCACTCGATACTTGAATTTTGAGCTCAATTACCTCAATTTCGATAAGAGATGATAAAAATTTGTCAACTGATAAAATGTTTATCATGATATCATCAACATTTTATTAGTTGGCGCATTTTTGATACCTCTTATAGTAACCAAGATAACTGAGCTCAAAGTGCAAGCATAGGAGGACCTTCTATTAGAGTGCTTACGGTATCCTACTATTTCCTTTGAAGTAACGAGTAATTTAGACTAATATGAAAAAAATTGCTTTTCAAATCTTTCAAAACCAAAACTTTGATAGTCTTTAAGAAGTACAGTAATCCGTTCTCTGAAAGGTAAGTGCATTTTTTCATCTGTCTGCTTATTAATGCCGTCTAAACAGCAAATTTGAGAGCACGACTACAAAACCTTCTTGACTACTGTTGGCAAACAAAAATATATTCTTTCTCTCGAATCTTCAACAATTTTTTTCGTAATACAAACTATAATTCAGTTGCGAAAATGTCAACCTCACTCCAGATATCAATCCGAAGAAATCGAGAATTTATCGACTCTCAACCCTTTTTTACGCGATACTCTGACAGCTGGTATACACCGAGTTATGGAGATTTATCGAGTTTAGCTCATTCGATATCTCAAAAGTTTATCTTAACCTTTGAATTTGAAAAGAAGGCATCTTGACTTCAGAAAAATTTTTTCGAGGGACTGAAAATGAAAATGAAGACTCTTATTGAGTTTTATTACATCTCCATTTCTCTACTTTCTTATTCTTCCATCTCAATTTAGCAAGCTAACACGAGGTACAAGTGAACA</canonical>
            <polymorphic>TCAATTTTTTTTTAATGCACCCTTCCATTTTGGACCAAATAAATTTTTCATGCTGAAAAAAGACTTCAAATTTTAACGAACCAAGTACTCAACATTTTCAGACAAACTTCCAAAATCTGCACTCAAAGCAGACGTTTAAAATTTCAAAAAAAAAAATTGAAGAAGAAATTAAAGAAGATACCGTAACACTCTAATAGAAGGCCACTCGATACTTGAATTTTGAGCTCAATTACCTCAATTTCGATAAGAGATGATAAAAATTTGTCAACTGATAAAATGTTTATCATGATATCATCAACATTTTATTAGTTGGCGCATTTTTGATACCTCTTATAGTAACCAAGATAACTGAGCTCAAAGTGCAAGCATAGGAGGACCTTCTATTAGAGTGCTTACGGTATCCTACTATTTCCTTTGAAGTAACGAGTAATTTAGACTAATATGAAAAAAATTGCTTTTCAAATCTTTCAAAACCAAAACTTTGATAGTCTTTAAGAAGYACAGTAATCCGTTCTCTGAAAGGTAAGTGCATTTTTTCATCTGTCTGCTTATTAATGCCGTCTAAACAGCAAATTTGAGAGCACGACTACAAAACCTTCTTGACTACTGTTGGCAAACAAAAATATATTCTTTCTCTCGAATCTTCAACAATTTTTTTCGTAATACAAACTATAATTCAGTTGCGAAAATGTCAACCTCACTCCAGATATCAATCCGAAGAAATCGAGAATTTATCGACTCTCAACCCTTTTTTACGCGATACTCTGACAGCTGGTATACACCGAGTTATGGAGATTTATCGAGTTTAGCTCATTCGATATCTCAAAAGTTTATCTTAACCTTTGAATTTGAAAAGAAGGCATCTTGACTTCAGAAAAATTTTTTCGAGGGACTGAAAATGAAAATGAAGACTCTTATTGAGTTTTATTACATCTCCATTTCTCTACTTTCTTATTCTTCCATCTCAATTTAGCAAGCTAACACGAGGTACAAGTGAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>489 414 86 11</canonical_bands>
                <polymorphic_bands>903 86 11</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>502 414 84</canonical_bands>
                <polymorphic_bands>916 84</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTGCTTTTCAAATCTTTC</pcr_primer_p1>
		<pcr_primer_p2>ACATTTTCGCAACTGAATTATAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTGCTTTTCAAATCTTTCAAAACCAAAACTTTGATAGTCTTTAAGAAGTACAGTAATCCGTTCTCTGAAAGGTAAGTGCATTTTTTCATCTGTCTGCTTATTAATGCCGTCTAAACAGCAAATTTGAGAGCACGACTACAAAACCTTCTTGACTACTGTTGGCAAACAAAAATATATTCTTTCTCTCGAATCTTCAACAATTTTTTTCGTAATACAAACTATAATTCAGTTGCGAAAATGT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTGCTTTTCAAATCTTTCAAAACCAAAACTTTGATAGTCTTTAAGAAGYACAGTAATCCGTTCTCTGAAAGGTAAGTGCATTTTTTCATCTGTCTGCTTATTAATGCCGTCTAAACAGCAAATTTGAGAGCACGACTACAAAACCTTCTTGACTACTGTTGGCAAACAAAAATATATTCTTTCTCTCGAATCTTCAACAATTTTTTTCGTAATACAAACTATAATTCAGTTGCGAAAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28843</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>429900</contig_pos>
        <strand>+</strand>
        <context>CATCTGTCTG[A/C]TTATTAATGC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTACAGTAATCCGTTCTCTGAAAGGTAAGTGCATTTTTTCATCTGTCTG</left_flank>
        <right_flank>TTATTAATGCCGTCTAAACAGCAAATTTGAGAGCACGACTACAAAACCTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGCTGAAAAAAGACTTCAAATTTTAACGAACCAAGTACTCAACATTTTCAGACAAACTTCCAAAATCTGCACTCAAAGCAGACGTTTAAAATTTCAAAAAAAAAAATTGAAGAAGAAATTAAAGAAGATACCGTAACACTCTAATAGAAGGCCACTCGATACTTGAATTTTGAGCTCAATTACCTCAATTTCGATAAGAGATGATAAAAATTTGTCAACTGATAAAATGTTTATCATGATATCATCAACATTTTATTAGTTGGCGCATTTTTGATACCTCTTATAGTAACCAAGATAACTGAGCTCAAAGTGCAAGCATAGGAGGACCTTCTATTAGAGTGCTTACGGTATCCTACTATTTCCTTTGAAGTAACGAGTAATTTAGACTAATATGAAAAAAATTGCTTTTCAAATCTTTCAAAACCAAAACTTTGATAGTCTTTAAGAAGTACAGTAATCCGTTCTCTGAAAGGTAAGTGCATTTTTTCATCTGTCTGCTTATTAATGCCGTCTAAACAGCAAATTTGAGAGCACGACTACAAAACCTTCTTGACTACTGTTGGCAAACAAAAATATATTCTTTCTCTCGAATCTTCAACAATTTTTTTCGTAATACAAACTATAATTCAGTTGCGAAAATGTCAACCTCACTCCAGATATCAATCCGAAGAAATCGAGAATTTATCGACTCTCAACCCTTTTTTACGCGATACTCTGACAGCTGGTATACACCGAGTTATGGAGATTTATCGAGTTTAGCTCATTCGATATCTCAAAAGTTTATCTTAACCTTTGAATTTGAAAAGAAGGCATCTTGACTTCAGAAAAATTTTTTCGAGGGACTGAAAATGAAAATGAAGACTCTTATTGAGTTTTATTACATCTCCATTTCTCTACTTTCTTATTCTTCCATCTCAATTTAGCAAGCTAACACGAGGTACAAGTGAACAATTTATAAGTGGATGATGGCTCATAAAGTGTGTGGTTCTCTGTTGTCT</canonical>
            <polymorphic>CATGCTGAAAAAAGACTTCAAATTTTAACGAACCAAGTACTCAACATTTTCAGACAAACTTCCAAAATCTGCACTCAAAGCAGACGTTTAAAATTTCAAAAAAAAAAATTGAAGAAGAAATTAAAGAAGATACCGTAACACTCTAATAGAAGGCCACTCGATACTTGAATTTTGAGCTCAATTACCTCAATTTCGATAAGAGATGATAAAAATTTGTCAACTGATAAAATGTTTATCATGATATCATCAACATTTTATTAGTTGGCGCATTTTTGATACCTCTTATAGTAACCAAGATAACTGAGCTCAAAGTGCAAGCATAGGAGGACCTTCTATTAGAGTGCTTACGGTATCCTACTATTTCCTTTGAAGTAACGAGTAATTTAGACTAATATGAAAAAAATTGCTTTTCAAATCTTTCAAAACCAAAACTTTGATAGTCTTTAAGAAGTACAGTAATCCGTTCTCTGAAAGGTAAGTGCATTTTTTCATCTGTCTGMTTATTAATGCCGTCTAAACAGCAAATTTGAGAGCACGACTACAAAACCTTCTTGACTACTGTTGGCAAACAAAAATATATTCTTTCTCTCGAATCTTCAACAATTTTTTTCGTAATACAAACTATAATTCAGTTGCGAAAATGTCAACCTCACTCCAGATATCAATCCGAAGAAATCGAGAATTTATCGACTCTCAACCCTTTTTTACGCGATACTCTGACAGCTGGTATACACCGAGTTATGGAGATTTATCGAGTTTAGCTCATTCGATATCTCAAAAGTTTATCTTAACCTTTGAATTTGAAAAGAAGGCATCTTGACTTCAGAAAAATTTTTTCGAGGGACTGAAAATGAAAATGAAGACTCTTATTGAGTTTTATTACATCTCCATTTCTCTACTTTCTTATTCTTCCATCTCAATTTAGCAAGCTAACACGAGGTACAAGTGAACAATTTATAAGTGGATGATGGCTCATAAAGTGTGTGGTTCTCTGTTGTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAAACCAAAACTTTGATAG</pcr_primer_p1>
		<pcr_primer_p2>GATTGATATCTGGAGTGAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAAACCAAAACTTTGATAGTCTTTAAGAAGTACAGTAATCCGTTCTCTGAAAGGTAAGTGCATTTTTTCATCTGTCTGCTTATTAATGCCGTCTAAACAGCAAATTTGAGAGCACGACTACAAAACCTTCTTGACTACTGTTGGCAAACAAAAATATATTCTTTCTCTCGAATCTTCAACAATTTTTTTCGTAATACAAACTATAATTCAGTTGCGAAAATGTCAACCTCACTCCAGATATCAATC</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAAACCAAAACTTTGATAGTCTTTAAGAAGTACAGTAATCCGTTCTCTGAAAGGTAAGTGCATTTTTTCATCTGTCTGMTTATTAATGCCGTCTAAACAGCAAATTTGAGAGCACGACTACAAAACCTTCTTGACTACTGTTGGCAAACAAAAATATATTCTTTCTCTCGAATCTTCAACAATTTTTTTCGTAATACAAACTATAATTCAGTTGCGAAAATGTCAACCTCACTCCAGATATCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28844</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>430169</contig_pos>
        <strand>+</strand>
        <context>TAGCTCATTC[C/G]ATATCTCAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GACAGCTGGTATACACCGAGTTATGGAGATTTATCGAGTTTAGCTCATTC</left_flank>
        <right_flank>ATATCTCAAAAGTTTATCTTAACCTTTGAATTTGAAAAGAAGGCATCTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTGATACCTCTTATAGTAACCAAGATAACTGAGCTCAAAGTGCAAGCATAGGAGGACCTTCTATTAGAGTGCTTACGGTATCCTACTATTTCCTTTGAAGTAACGAGTAATTTAGACTAATATGAAAAAAATTGCTTTTCAAATCTTTCAAAACCAAAACTTTGATAGTCTTTAAGAAGTACAGTAATCCGTTCTCTGAAAGGTAAGTGCATTTTTTCATCTGTCTGCTTATTAATGCCGTCTAAACAGCAAATTTGAGAGCACGACTACAAAACCTTCTTGACTACTGTTGGCAAACAAAAATATATTCTTTCTCTCGAATCTTCAACAATTTTTTTCGTAATACAAACTATAATTCAGTTGCGAAAATGTCAACCTCACTCCAGATATCAATCCGAAGAAATCGAGAATTTATCGACTCTCAACCCTTTTTTACGCGATACTCTGACAGCTGGTATACACCGAGTTATGGAGATTTATCGAGTTTAGCTCATTCGATATCTCAAAAGTTTATCTTAACCTTTGAATTTGAAAAGAAGGCATCTTGACTTCAGAAAAATTTTTTCGAGGGACTGAAAATGAAAATGAAGACTCTTATTGAGTTTTATTACATCTCCATTTCTCTACTTTCTTATTCTTCCATCTCAATTTAGCAAGCTAACACGAGGTACAAGTGAACAATTTATAAGTGGATGATGGCTCATAAAGTGTGTGGTTCTCTGTTGTCTCGACATGCTCCGATGATCCGGTATCCTCTCCTCTAAATGATTAGTACTTTTCATTTCGTATCCTTGGAAGGGGGTGAGGCAGCAGGGGCAGCAGATGATGATAGATGACGAAGACCGGCGAAGAACAGGGGACCATCTTAACTCTCAAGTAGTTGACACTGATTTGCATATGGCTTGGCACCCGCATTATACTCTCTTTTGGGGTTAAGAATTTTGTTAAAGTAGAGATGAGGGGATTCAGTGGTCATTTATTACTTGAAACATGTTGT</canonical>
            <polymorphic>TTTTTGATACCTCTTATAGTAACCAAGATAACTGAGCTCAAAGTGCAAGCATAGGAGGACCTTCTATTAGAGTGCTTACGGTATCCTACTATTTCCTTTGAAGTAACGAGTAATTTAGACTAATATGAAAAAAATTGCTTTTCAAATCTTTCAAAACCAAAACTTTGATAGTCTTTAAGAAGTACAGTAATCCGTTCTCTGAAAGGTAAGTGCATTTTTTCATCTGTCTGCTTATTAATGCCGTCTAAACAGCAAATTTGAGAGCACGACTACAAAACCTTCTTGACTACTGTTGGCAAACAAAAATATATTCTTTCTCTCGAATCTTCAACAATTTTTTTCGTAATACAAACTATAATTCAGTTGCGAAAATGTCAACCTCACTCCAGATATCAATCCGAAGAAATCGAGAATTTATCGACTCTCAACCCTTTTTTACGCGATACTCTGACAGCTGGTATACACCGAGTTATGGAGATTTATCGAGTTTAGCTCATTCSATATCTCAAAAGTTTATCTTAACCTTTGAATTTGAAAAGAAGGCATCTTGACTTCAGAAAAATTTTTTCGAGGGACTGAAAATGAAAATGAAGACTCTTATTGAGTTTTATTACATCTCCATTTCTCTACTTTCTTATTCTTCCATCTCAATTTAGCAAGCTAACACGAGGTACAAGTGAACAATTTATAAGTGGATGATGGCTCATAAAGTGTGTGGTTCTCTGTTGTCTCGACATGCTCCGATGATCCGGTATCCTCTCCTCTAAATGATTAGTACTTTTCATTTCGTATCCTTGGAAGGGGGTGAGGCAGCAGGGGCAGCAGATGATGATAGATGACGAAGACCGGCGAAGAACAGGGGACCATCTTAACTCTCAAGTAGTTGACACTGATTTGCATATGGCTTGGCACCCGCATTATACTCTCTTTTGGGGTTAAGAATTTTGTTAAAGTAGAGATGAGGGGATTCAGTGGTCATTTATTACTTGAAACATGTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>498 391 111</canonical_bands>
                <polymorphic_bands>609 391</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>321 268 163 87 70 65 15 11</canonical_bands>
                <polymorphic_bands>321 268 163 87 85 65 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTATAATTCAGTTGCGAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGTCTTCATTTTCATTTTCAGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAACTATAATTCAGTTGCGAAAATGTCAACCTCACTCCAGATATCAATCCGAAGAAATCGAGAATTTATCGACTCTCAACCCTTTTTTACGCGATACTCTGACAGCTGGTATACACCGAGTTATGGAGATTTATCGAGTTTAGCTCATTCGATATCTCAAAAGTTTATCTTAACCTTTGAATTTGAAAAGAAGGCATCTTGACTTCAGAAAAATTTTTTCGAGGGACTGAAAATGAAAATGAAGACTC</canonical_amplicon>
		<polymorphic_amplicon>AAACTATAATTCAGTTGCGAAAATGTCAACCTCACTCCAGATATCAATCCGAAGAAATCGAGAATTTATCGACTCTCAACCCTTTTTTACGCGATACTCTGACAGCTGGTATACACCGAGTTATGGAGATTTATCGAGTTTAGCTCATTCSATATCTCAAAAGTTTATCTTAACCTTTGAATTTGAAAAGAAGGCATCTTGACTTCAGAAAAATTTTTTCGAGGGACTGAAAATGAAAATGAAGACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28845</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>431610</contig_pos>
        <strand>+</strand>
        <context>ATCGCCCTCA[C/G]aagttcaact</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCA</left_flank>
        <right_flank>AAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAAAATTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATCTTTCACTCGTTTTCTTGTTTTTTTTTCCTACTCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGGAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGGAAATTAGTTTTTTCGGTCGGATCTGGTCAGAAAATCACCGGATGTGGTCGGAAAAAAAACTTTCCGAATCTGGTTGGAAAATGCGCGTTCCCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGAGTACAGTACCCTACAGTATTATTTTCGCTTTACAACTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGAGTGCGCTTTTTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAAAATTATTTTTTTCATGTCCCCCCACCTTTAAGCTTCTCAAAATACAAAGAAGGCTAGAAGCTTGTTTTTCTATATTTTTCCATGTAAAAATGTTCCAAGTACATTTCCAGGTTTACCGCTAATCATGTTCGGAAATCACGACAAACAAAGAGCGCGCTCGCGCCGTGTTATCAACAGAGCGCGTTTGCAGCAGTGTCCGAATTTGCGGCGTGCGCGCGTTCCTCGCGGAATTCCTCTAGTTTTTTGTGCGCAGTATCGACCGACATCTTCTCATCGTTCGCATAATTAACCTTGTCGTTGTGTTTATTGATTTTGTCGTTTTTTTCAGAATGGTTGCTTGTAAAGTGGAGGAAGCAGATGCGGGTGTTGGAGCAACTGTGAAAGTTGAAACGGGCAATGGATTGGTCAGCGAAGGAATCGTGATTTCCTTCGATAAGGCAAGAAACGTCAGTTCGT</canonical>
            <polymorphic>GATCTTTCACTCGTTTTCTTGTTTTTTTTTCCTACTCTGGTAATCGGTTTCCAACCAGATTCGGGAAAATTCCGGAGCAGAAATGGCTAGATCTGGTTAGAAAATTGTCCGAATCAGGTTGGGAAATTAGTTTTTTCGGTCGGATCTGGTCAGAAAATCACCGGATGTGGTCGGAAAAAAAACTTTCCGAATCTGGTTGGAAAATGCGCGTTCCCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGAGTACAGTACCCTACAGTATTATTTTCGCTTTACAACTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGAGTGCGCTTTTTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCASAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAAAATTATTTTTTTCATGTCCCCCCACCTTTAAGCTTCTCAAAATACAAAGAAGGCTAGAAGCTTGTTTTTCTATATTTTTCCATGTAAAAATGTTCCAAGTACATTTCCAGGTTTACCGCTAATCATGTTCGGAAATCACGACAAACAAAGAGCGCGCTCGCGCCGTGTTATCAACAGAGCGCGTTTGCAGCAGTGTCCGAATTTGCGGCGTGCGCGCGTTCCTCGCGGAATTCCTCTAGTTTTTTGTGCGCAGTATCGACCGACATCTTCTCATCGTTCGCATAATTAACCTTGTCGTTGTGTTTATTGATTTTGTCGTTTTTTTCAGAATGGTTGCTTGTAAAGTGGAGGAAGCAGATGCGGGTGTTGGAGCAACTGTGAAAGTTGAAACGGGCAATGGATTGGTCAGCGAAGGAATCGTGATTTCCTTCGATAAGGCAAGAAACGTCAGTTCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>151 140 114 69 57 54 48 45 42 36 34 29 28 23 21 19 19 17 17 14 9 9 5</canonical_bands>
                <polymorphic_bands>151 140 114 88 57 54 48 45 42 36 34 29 28 23 21 19 17 17 14 9 9 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGAGTATGCATTCTACCGTCAC</pcr_primer_p1>
		<pcr_primer_p2>GTATTTTGAGAAGCTTAAAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGAGTGCGCTTTTTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAAAATTATTTTTTTCATGTCCCCCCACCTTTAAGCTTCTCAAAATAC</canonical_amplicon>
		<polymorphic_amplicon>TAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGAGTGCGCTTTTTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCASAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAAAATTATTTTTTTCATGTCCCCCCACCTTTAAGCTTCTCAAAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28846</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>431743</contig_pos>
        <strand>+</strand>
        <context>TCCATGTAAA[A/C]WTGTTCCAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAATACAAAGAAGGCTAGAAGCTTGTTTTTCTATATTTTTCCATGTAAA</left_flank>
        <right_flank>ATGTTCCAAGTACATTTCCAGGTTTACCGCTAATCATGTTCGGAAATCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGGTCGGATCTGGTCAGAAAATCACCGGATGTGGTCGGAAAAAAAACTTTCCGAATCTGGTTGGAAAATGCGCGTTCCCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGAGTACAGTACCCTACAGTATTATTTTCGCTTTACAACTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGAGTGCGCTTTTTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAAAATTATTTTTTTCATGTCCCCCCACCTTTAAGCTTCTCAAAATACAAAGAAGGCTAGAAGCTTGTTTTTCTATATTTTTCCATGTAAAAATGTTCCAAGTACATTTCCAGGTTTACCGCTAATCATGTTCGGAAATCACGACAAACAAAGAGCGCGCTCGCGCCGTGTTATCAACAGAGCGCGTTTGCAGCAGTGTCCGAATTTGCGGCGTGCGCGCGTTCCTCGCGGAATTCCTCTAGTTTTTTGTGCGCAGTATCGACCGACATCTTCTCATCGTTCGCATAATTAACCTTGTCGTTGTGTTTATTGATTTTGTCGTTTTTTTCAGAATGGTTGCTTGTAAAGTGGAGGAAGCAGATGCGGGTGTTGGAGCAACTGTGAAAGTTGAAACGGGCAATGGATTGGTCAGCGAAGGAATCGTGATTTCCTTCGATAAGGCAAGAAACGTCAGTTCGTTTGATTTCATTCAACATTTGATTGTAGACATAGTTTTTAAATAAGAATAATTCAAAATCAAGTATATAAAGCTTCAGATGCTGGTTCTCGACACCAAGGAAATCGCTTCCAGCAAACCAATAATTCGCATATT</canonical>
            <polymorphic>TTTCGGTCGGATCTGGTCAGAAAATCACCGGATGTGGTCGGAAAAAAAACTTTCCGAATCTGGTTGGAAAATGCGCGTTCCCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGAGTACAGTACCCTACAGTATTATTTTCGCTTTACAACTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGAGTGCGCTTTTTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAAAATTATTTTTTTCATGTCCCCCCACCTTTAAGCTTCTCAAAATACAAAGAAGGCTAGAAGCTTGTTTTTCTATATTTTTCCATGTAAAMATGTTCCAAGTACATTTCCAGGTTTACCGCTAATCATGTTCGGAAATCACGACAAACAAAGAGCGCGCTCGCGCCGTGTTATCAACAGAGCGCGTTTGCAGCAGTGTCCGAATTTGCGGCGTGCGCGCGTTCCTCGCGGAATTCCTCTAGTTTTTTGTGCGCAGTATCGACCGACATCTTCTCATCGTTCGCATAATTAACCTTGTCGTTGTGTTTATTGATTTTGTCGTTTTTTTCAGAATGGTTGCTTGTAAAGTGGAGGAAGCAGATGCGGGTGTTGGAGCAACTGTGAAAGTTGAAACGGGCAATGGATTGGTCAGCGAAGGAATCGTGATTTCCTTCGATAAGGCAAGAAACGTCAGTTCGTTTGATTTCATTCAACATTTGATTGTAGACATAGTTTTTAAATAAGAATAATTCAAAATCAAGTATATAAAGCTTCAGATGCTGGTTCTCGACACCAAGGAAATCGCTTCCAGCAAACCAATAATTCGCATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAATACAAAGAAGGCTAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATTATGCGAACGATGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAAAATACAAAGAAGGCTAGAAGCTTGTTTTTCTATATTTTTCCATGTAAAAATGTTCCAAGTACATTTCCAGGTTTACCGCTAATCATGTTCGGAAATCACGACAAACAAAGAGCGCGCTCGCGCCGTGTTATCAACAGAGCGCGTTTGCAGCAGTGTCCGAATTTGCGGCGTGCGCGCGTTCCTCGCGGAATTCCTCTAGTTTTTTGTGCGCAGTATCGACCGACATCTTCTCATCGTTCGCATAAT</canonical_amplicon>
		<polymorphic_amplicon>TCAAAATACAAAGAAGGCTAGAAGCTTGTTTTTCTATATTTTTCCATGTAAAMATGTTCCAAGTACATTTCCAGGTTTACCGCTAATCATGTTCGGAAATCACGACAAACAAAGAGCGCGCTCGCGCCGTGTTATCAACAGAGCGCGTTTGCAGCAGTGTCCGAATTTGCGGCGTGCGCGCGTTCCTCGCGGAATTCCTCTAGTTTTTTGTGCGCAGTATCGACCGACATCTTCTCATCGTTCGCATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28847</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>431744</contig_pos>
        <strand>+</strand>
        <context>CCATGTAAAM[A/T]TGTTCCAAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATACAAAGAAGGCTAGAAGCTTGTTTTTCTATATTTTTCCATGTAAAA</left_flank>
        <right_flank>TGTTCCAAGTACATTTCCAGGTTTACCGCTAATCATGTTCGGAAATCACG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGGTCGGATCTGGTCAGAAAATCACCGGATGTGGTCGGAAAAAAAACTTTCCGAATCTGGTTGGAAAATGCGCGTTCCCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGAGTACAGTACCCTACAGTATTATTTTCGCTTTACAACTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGAGTGCGCTTTTTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAAAATTATTTTTTTCATGTCCCCCCACCTTTAAGCTTCTCAAAATACAAAGAAGGCTAGAAGCTTGTTTTTCTATATTTTTCCATGTAAAAATGTTCCAAGTACATTTCCAGGTTTACCGCTAATCATGTTCGGAAATCACGACAAACAAAGAGCGCGCTCGCGCCGTGTTATCAACAGAGCGCGTTTGCAGCAGTGTCCGAATTTGCGGCGTGCGCGCGTTCCTCGCGGAATTCCTCTAGTTTTTTGTGCGCAGTATCGACCGACATCTTCTCATCGTTCGCATAATTAACCTTGTCGTTGTGTTTATTGATTTTGTCGTTTTTTTCAGAATGGTTGCTTGTAAAGTGGAGGAAGCAGATGCGGGTGTTGGAGCAACTGTGAAAGTTGAAACGGGCAATGGATTGGTCAGCGAAGGAATCGTGATTTCCTTCGATAAGGCAAGAAACGTCAGTTCGTTTGATTTCATTCAACATTTGATTGTAGACATAGTTTTTAAATAAGAATAATTCAAAATCAAGTATATAAAGCTTCAGATGCTGGTTCTCGACACCAAGGAAATCGCTTCCAGCAAACCAATAATTCGCATATTC</canonical>
            <polymorphic>TTCGGTCGGATCTGGTCAGAAAATCACCGGATGTGGTCGGAAAAAAAACTTTCCGAATCTGGTTGGAAAATGCGCGTTCCCGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGAGTACAGTACCCTACAGTATTATTTTCGCTTTACAACTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGAGTGCGCTTTTTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAAAATTATTTTTTTCATGTCCCCCCACCTTTAAGCTTCTCAAAATACAAAGAAGGCTAGAAGCTTGTTTTTCTATATTTTTCCATGTAAAAWTGTTCCAAGTACATTTCCAGGTTTACCGCTAATCATGTTCGGAAATCACGACAAACAAAGAGCGCGCTCGCGCCGTGTTATCAACAGAGCGCGTTTGCAGCAGTGTCCGAATTTGCGGCGTGCGCGCGTTCCTCGCGGAATTCCTCTAGTTTTTTGTGCGCAGTATCGACCGACATCTTCTCATCGTTCGCATAATTAACCTTGTCGTTGTGTTTATTGATTTTGTCGTTTTTTTCAGAATGGTTGCTTGTAAAGTGGAGGAAGCAGATGCGGGTGTTGGAGCAACTGTGAAAGTTGAAACGGGCAATGGATTGGTCAGCGAAGGAATCGTGATTTCCTTCGATAAGGCAAGAAACGTCAGTTCGTTTGATTTCATTCAACATTTGATTGTAGACATAGTTTTTAAATAAGAATAATTCAAAATCAAGTATATAAAGCTTCAGATGCTGGTTCTCGACACCAAGGAAATCGCTTCCAGCAAACCAATAATTCGCATATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAATACAAAGAAGGCTAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATTATGCGAACGATGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAAAATACAAAGAAGGCTAGAAGCTTGTTTTTCTATATTTTTCCATGTAAAAATGTTCCAAGTACATTTCCAGGTTTACCGCTAATCATGTTCGGAAATCACGACAAACAAAGAGCGCGCTCGCGCCGTGTTATCAACAGAGCGCGTTTGCAGCAGTGTCCGAATTTGCGGCGTGCGCGCGTTCCTCGCGGAATTCCTCTAGTTTTTTGTGCGCAGTATCGACCGACATCTTCTCATCGTTCGCATAAT</canonical_amplicon>
		<polymorphic_amplicon>TCAAAATACAAAGAAGGCTAGAAGCTTGTTTTTCTATATTTTTCCATGTAAAAWTGTTCCAAGTACATTTCCAGGTTTACCGCTAATCATGTTCGGAAATCACGACAAACAAAGAGCGCGCTCGCGCCGTGTTATCAACAGAGCGCGTTTGCAGCAGTGTCCGAATTTGCGGCGTGCGCGCGTTCCTCGCGGAATTCCTCTAGTTTTTTGTGCGCAGTATCGACCGACATCTTCTCATCGTTCGCATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28848</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>431824</contig_pos>
        <strand>+</strand>
        <context>GCGCCGTGTT[A/C]TCAACAGAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAATCATGTTCGGAAATCACGACAAACAAAGAGCGCGCTCGCGCCGTGTT</left_flank>
        <right_flank>TCAACAGAGCGCGTTTGCAGCAGTGTCCGAATTTGCGGCGTGCGCGCGTT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGAGTACAGTACCCTACAGTATTATTTTCGCTTTACAACTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGAGTGCGCTTTTTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAAAATTATTTTTTTCATGTCCCCCCACCTTTAAGCTTCTCAAAATACAAAGAAGGCTAGAAGCTTGTTTTTCTATATTTTTCCATGTAAAAATGTTCCAAGTACATTTCCAGGTTTACCGCTAATCATGTTCGGAAATCACGACAAACAAAGAGCGCGCTCGCGCCGTGTTATCAACAGAGCGCGTTTGCAGCAGTGTCCGAATTTGCGGCGTGCGCGCGTTCCTCGCGGAATTCCTCTAGTTTTTTGTGCGCAGTATCGACCGACATCTTCTCATCGTTCGCATAATTAACCTTGTCGTTGTGTTTATTGATTTTGTCGTTTTTTTCAGAATGGTTGCTTGTAAAGTGGAGGAAGCAGATGCGGGTGTTGGAGCAACTGTGAAAGTTGAAACGGGCAATGGATTGGTCAGCGAAGGAATCGTGATTTCCTTCGATAAGGCAAGAAACGTCAGTTCGTTTGATTTCATTCAACATTTGATTGTAGACATAGTTTTTAAATAAGAATAATTCAAAATCAAGTATATAAAGCTTCAGATGCTGGTTCTCGACACCAAGGAAATCGCTTCCAGCAAACCAATAATTCGCATATTCAACAGTAAAAACCTCAAAAACGTAAGTTTTTGTTTGCTTTTCCTTTGCATTATTTTTTTTCAGGTCAAAGTGGTGTCGCA</canonical>
            <polymorphic>CGAATCTGGTTGGAAAATTGCCCGAAACTGGTTAGAAACCGATTACCAGAGTACAGTACCCTACAGTATTATTTTCGCTTTACAACTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGAGTGCGCTTTTTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAAAATTATTTTTTTCATGTCCCCCCACCTTTAAGCTTCTCAAAATACAAAGAAGGCTAGAAGCTTGTTTTTCTATATTTTTCCATGTAAAAATGTTCCAAGTACATTTCCAGGTTTACCGCTAATCATGTTCGGAAATCACGACAAACAAAGAGCGCGCTCGCGCCGTGTTMTCAACAGAGCGCGTTTGCAGCAGTGTCCGAATTTGCGGCGTGCGCGCGTTCCTCGCGGAATTCCTCTAGTTTTTTGTGCGCAGTATCGACCGACATCTTCTCATCGTTCGCATAATTAACCTTGTCGTTGTGTTTATTGATTTTGTCGTTTTTTTCAGAATGGTTGCTTGTAAAGTGGAGGAAGCAGATGCGGGTGTTGGAGCAACTGTGAAAGTTGAAACGGGCAATGGATTGGTCAGCGAAGGAATCGTGATTTCCTTCGATAAGGCAAGAAACGTCAGTTCGTTTGATTTCATTCAACATTTGATTGTAGACATAGTTTTTAAATAAGAATAATTCAAAATCAAGTATATAAAGCTTCAGATGCTGGTTCTCGACACCAAGGAAATCGCTTCCAGCAAACCAATAATTCGCATATTCAACAGTAAAAACCTCAAAAACGTAAGTTTTTGTTTGCTTTTCCTTTGCATTATTTTTTTTCAGGTCAAAGTGGTGTCGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGCTAGAAGCTTGTTTTTCTAT</pcr_primer_p1>
		<pcr_primer_p2>ACACAACGACAAGGTTAATTATG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AGGCTAGAAGCTTGTTTTTCTATATTTTTCCATGTAAAAATGTTCCAAGTACATTTCCAGGTTTACCGCTAATCATGTTCGGAAATCACGACAAACAAAGAGCGCGCTCGCGCCGTGTTATCAACAGAGCGCGTTTGCAGCAGTGTCCGAATTTGCGGCGTGCGCGCGTTCCTCGCGGAATTCCTCTAGTTTTTTGTGCGCAGTATCGACCGACATCTTCTCATCGTTCGCATAATTAACCTTGTCGTTGTGT</canonical_amplicon>
		<polymorphic_amplicon>AGGCTAGAAGCTTGTTTTTCTATATTTTTCCATGTAAAAATGTTCCAAGTACATTTCCAGGTTTACCGCTAATCATGTTCGGAAATCACGACAAACAAAGAGCGCGCTCGCGCCGTGTTMTCAACAGAGCGCGTTTGCAGCAGTGTCCGAATTTGCGGCGTGCGCGCGTTCCTCGCGGAATTCCTCTAGTTTTTTGTGCGCAGTATCGACCGACATCTTCTCATCGTTCGCATAATTAACCTTGTCGTTGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28849</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>470424</contig_pos>
        <strand>+</strand>
        <context>GATATTTACA[C/T]AAAATGAACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGCAGGATGTTTCGGGCTGTCAAGAGAGACGAAAAAACCGATATTTACA</left_flank>
        <right_flank>AAAATGAACAAAAAATAGTCACTGGTGGGCCACCACTCCGTTTCCCTGTC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATAGGGAAATTCAGCTGATTACTCATAAGAATCTGAAGAGTTTCAACTAAAGCAAGCGAAAATAGGCAAAAATAAAATAATTCCAAAGTACTGTAATAAAGGCGCATATTTGTAGAAGGTAGACCGAAGATTACACAACGACAATTACCGTAACCAAAAACAATTCAAATATTTTCCGGGTTTTTTATCTCGCGAGATCTCGGTTTTTTAGGGCTTTTCAGTTTTCTCAAATTTTTCATTTTTCGACTTTTTTAGTGAAAAATAACAGAAAAATAGTCGAAAATCAATTTAAAAAACTGGAGAATAAATCCTGACAATGCAAGTATTTTTAGGTTACTGTAGTTGTCGTTGCGGGACCTTCGGCTACGGTCAACGGCGTTTAACTTCGAAAATACGGAATTTGAAAGATGCGCTGTTCAAATTTGGGAAGATGAGCTGACAAGCGATAGCAGGATGTTTCGGGCTGTCAAGAGAGACGAAAAAACCGATATTTACATAAAATGAACAAAAAATAGTCACTGGTGGGCCACCACTCCGTTTCCCTGTCCAAAAAGCAAACAGACCGGAGCTTCGAAAATACAGAGAAAAGCCATTCGACACACTCATTCTCTCTCTATCTCTCGTATCCTCCTGACTCACTGTGCTCAGTGGTGGACAAAAGTGTGTGCATTTGCTCTCTCCCAGAGAGCATCCTTCAACATCCGGAAAATGAAAACAACACAATAAAAGGAGCAAAGGTTTATACTATAGTTACTATATTTCACCGTATTTCAATAAATATATACATTTTTTCCAGTATGGGTGAGAGAGGCAATGCAATAGGGGGAGAAGGGGAGAAGGATGCAATAAAACTTTTTGTAAACTATTCAAATATTAGCTAGAAGAACTAGGCAAAAACAGGGATGGGAACGAGAGAAGAAGCGAGAAACCCAATATTATCAAGTAGTTAGTGTTCCAGAATGCGCAGGTTTCCGGAGACGATCTTATTCTCGAGAAT</canonical>
            <polymorphic>TTTATAGGGAAATTCAGCTGATTACTCATAAGAATCTGAAGAGTTTCAACTAAAGCAAGCGAAAATAGGCAAAAATAAAATAATTCCAAAGTACTGTAATAAAGGCGCATATTTGTAGAAGGTAGACCGAAGATTACACAACGACAATTACCGTAACCAAAAACAATTCAAATATTTTCCGGGTTTTTTATCTCGCGAGATCTCGGTTTTTTAGGGCTTTTCAGTTTTCTCAAATTTTTCATTTTTCGACTTTTTTAGTGAAAAATAACAGAAAAATAGTCGAAAATCAATTTAAAAAACTGGAGAATAAATCCTGACAATGCAAGTATTTTTAGGTTACTGTAGTTGTCGTTGCGGGACCTTCGGCTACGGTCAACGGCGTTTAACTTCGAAAATACGGAATTTGAAAGATGCGCTGTTCAAATTTGGGAAGATGAGCTGACAAGCGATAGCAGGATGTTTCGGGCTGTCAAGAGAGACGAAAAAACCGATATTTACAYAAAATGAACAAAAAATAGTCACTGGTGGGCCACCACTCCGTTTCCCTGTCCAAAAAGCAAACAGACCGGAGCTTCGAAAATACAGAGAAAAGCCATTCGACACACTCATTCTCTCTCTATCTCTCGTATCCTCCTGACTCACTGTGCTCAGTGGTGGACAAAAGTGTGTGCATTTGCTCTCTCCCAGAGAGCATCCTTCAACATCCGGAAAATGAAAACAACACAATAAAAGGAGCAAAGGTTTATACTATAGTTACTATATTTCACCGTATTTCAATAAATATATACATTTTTTCCAGTATGGGTGAGAGAGGCAATGCAATAGGGGGAGAAGGGGAGAAGGATGCAATAAAACTTTTTGTAAACTATTCAAATATTAGCTAGAAGAACTAGGCAAAAACAGGGATGGGAACGAGAGAAGAAGCGAGAAACCCAATATTATCAAGTAGTTAGTGTTCCAGAATGCGCAGGTTTCCGGAGACGATCTTATTCTCGAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATACGGAATTTGAAAGATG</pcr_primer_p1>
		<pcr_primer_p2>AGTCAGGAGGATACGAGAGATAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAATACGGAATTTGAAAGATGCGCTGTTCAAATTTGGGAAGATGAGCTGACAAGCGATAGCAGGATGTTTCGGGCTGTCAAGAGAGACGAAAAAACCGATATTTACATAAAATGAACAAAAAATAGTCACTGGTGGGCCACCACTCCGTTTCCCTGTCCAAAAAGCAAACAGACCGGAGCTTCGAAAATACAGAGAAAAGCCATTCGACACACTCATTCTCTCTCTATCTCTCGTATCCTCCTGACT</canonical_amplicon>
		<polymorphic_amplicon>AAAATACGGAATTTGAAAGATGCGCTGTTCAAATTTGGGAAGATGAGCTGACAAGCGATAGCAGGATGTTTCGGGCTGTCAAGAGAGACGAAAAAACCGATATTTACAYAAAATGAACAAAAAATAGTCACTGGTGGGCCACCACTCCGTTTCCCTGTCCAAAAAGCAAACAGACCGGAGCTTCGAAAATACAGAGAAAAGCCATTCGACACACTCATTCTCTCTCTATCTCTCGTATCCTCCTGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28850</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>470500</contig_pos>
        <strand>+</strand>
        <context>CCGGAGCTTC[A/G]AAAATACAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGGCCACCACTCCGTTTCCCTGTCCAAAAAGCAAACAGACCGGAGCTTC</left_flank>
        <right_flank>AAAATACAGAGAAAAGCCATTCGACACACTCATTCTCTCTCTATCTCTCG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATAATTCCAAAGTACTGTAATAAAGGCGCATATTTGTAGAAGGTAGACCGAAGATTACACAACGACAATTACCGTAACCAAAAACAATTCAAATATTTTCCGGGTTTTTTATCTCGCGAGATCTCGGTTTTTTAGGGCTTTTCAGTTTTCTCAAATTTTTCATTTTTCGACTTTTTTAGTGAAAAATAACAGAAAAATAGTCGAAAATCAATTTAAAAAACTGGAGAATAAATCCTGACAATGCAAGTATTTTTAGGTTACTGTAGTTGTCGTTGCGGGACCTTCGGCTACGGTCAACGGCGTTTAACTTCGAAAATACGGAATTTGAAAGATGCGCTGTTCAAATTTGGGAAGATGAGCTGACAAGCGATAGCAGGATGTTTCGGGCTGTCAAGAGAGACGAAAAAACCGATATTTACATAAAATGAACAAAAAATAGTCACTGGTGGGCCACCACTCCGTTTCCCTGTCCAAAAAGCAAACAGACCGGAGCTTCGAAAATACAGAGAAAAGCCATTCGACACACTCATTCTCTCTCTATCTCTCGTATCCTCCTGACTCACTGTGCTCAGTGGTGGACAAAAGTGTGTGCATTTGCTCTCTCCCAGAGAGCATCCTTCAACATCCGGAAAATGAAAACAACACAATAAAAGGAGCAAAGGTTTATACTATAGTTACTATATTTCACCGTATTTCAATAAATATATACATTTTTTCCAGTATGGGTGAGAGAGGCAATGCAATAGGGGGAGAAGGGGAGAAGGATGCAATAAAACTTTTTGTAAACTATTCAAATATTAGCTAGAAGAACTAGGCAAAAACAGGGATGGGAACGAGAGAAGAAGCGAGAAACCCAATATTATCAAGTAGTTAGTGTTCCAGAATGCGCAGGTTTCCGGAGACGATCTTATTCTCGAGAATCGATCCAGGTGGAATGTCGATACGATCACCATGATTGGCAATAATGATGACAGTACCCTGCAAAATCAACATTTTT</canonical>
            <polymorphic>AAAATAATTCCAAAGTACTGTAATAAAGGCGCATATTTGTAGAAGGTAGACCGAAGATTACACAACGACAATTACCGTAACCAAAAACAATTCAAATATTTTCCGGGTTTTTTATCTCGCGAGATCTCGGTTTTTTAGGGCTTTTCAGTTTTCTCAAATTTTTCATTTTTCGACTTTTTTAGTGAAAAATAACAGAAAAATAGTCGAAAATCAATTTAAAAAACTGGAGAATAAATCCTGACAATGCAAGTATTTTTAGGTTACTGTAGTTGTCGTTGCGGGACCTTCGGCTACGGTCAACGGCGTTTAACTTCGAAAATACGGAATTTGAAAGATGCGCTGTTCAAATTTGGGAAGATGAGCTGACAAGCGATAGCAGGATGTTTCGGGCTGTCAAGAGAGACGAAAAAACCGATATTTACATAAAATGAACAAAAAATAGTCACTGGTGGGCCACCACTCCGTTTCCCTGTCCAAAAAGCAAACAGACCGGAGCTTCRAAAATACAGAGAAAAGCCATTCGACACACTCATTCTCTCTCTATCTCTCGTATCCTCCTGACTCACTGTGCTCAGTGGTGGACAAAAGTGTGTGCATTTGCTCTCTCCCAGAGAGCATCCTTCAACATCCGGAAAATGAAAACAACACAATAAAAGGAGCAAAGGTTTATACTATAGTTACTATATTTCACCGTATTTCAATAAATATATACATTTTTTCCAGTATGGGTGAGAGAGGCAATGCAATAGGGGGAGAAGGGGAGAAGGATGCAATAAAACTTTTTGTAAACTATTCAAATATTAGCTAGAAGAACTAGGCAAAAACAGGGATGGGAACGAGAGAAGAAGCGAGAAACCCAATATTATCAAGTAGTTAGTGTTCCAGAATGCGCAGGTTTCCGGAGACGATCTTATTCTCGAGAATCGATCCAGGTGGAATGTCGATACGATCACCATGATTGGCAATAATGATGACAGTACCCTGCAAAATCAACATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 313 185</canonical_bands>
                <polymorphic_bands>687 313</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>396 185 171 109 58 34 23 17 7</canonical_bands>
                <polymorphic_bands>396 208 171 109 58 34 17 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATACGGAATTTGAAAGATG</pcr_primer_p1>
		<pcr_primer_p2>AGTCAGGAGGATACGAGAGATAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAATACGGAATTTGAAAGATGCGCTGTTCAAATTTGGGAAGATGAGCTGACAAGCGATAGCAGGATGTTTCGGGCTGTCAAGAGAGACGAAAAAACCGATATTTACATAAAATGAACAAAAAATAGTCACTGGTGGGCCACCACTCCGTTTCCCTGTCCAAAAAGCAAACAGACCGGAGCTTCGAAAATACAGAGAAAAGCCATTCGACACACTCATTCTCTCTCTATCTCTCGTATCCTCCTGACT</canonical_amplicon>
		<polymorphic_amplicon>AAAATACGGAATTTGAAAGATGCGCTGTTCAAATTTGGGAAGATGAGCTGACAAGCGATAGCAGGATGTTTCGGGCTGTCAAGAGAGACGAAAAAACCGATATTTACATAAAATGAACAAAAAATAGTCACTGGTGGGCCACCACTCCGTTTCCCTGTCCAAAAAGCAAACAGACCGGAGCTTCRAAAATACAGAGAAAAGCCATTCGACACACTCATTCTCTCTCTATCTCTCGTATCCTCCTGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28851</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>470570</contig_pos>
        <strand>+</strand>
        <context>GACTCACTGT[A/G]CTCAGTGGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGACACACTCATTCTCTCTCTATCTCTCGTATCCTCCTGACTCACTGT</left_flank>
        <right_flank>CTCAGTGGTGGACAAAAGTGTGTGCATTTGCTCTCTCCCAGAGAGCATCC</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTACCGTAACCAAAAACAATTCAAATATTTTCCGGGTTTTTTATCTCGCGAGATCTCGGTTTTTTAGGGCTTTTCAGTTTTCTCAAATTTTTCATTTTTCGACTTTTTTAGTGAAAAATAACAGAAAAATAGTCGAAAATCAATTTAAAAAACTGGAGAATAAATCCTGACAATGCAAGTATTTTTAGGTTACTGTAGTTGTCGTTGCGGGACCTTCGGCTACGGTCAACGGCGTTTAACTTCGAAAATACGGAATTTGAAAGATGCGCTGTTCAAATTTGGGAAGATGAGCTGACAAGCGATAGCAGGATGTTTCGGGCTGTCAAGAGAGACGAAAAAACCGATATTTACATAAAATGAACAAAAAATAGTCACTGGTGGGCCACCACTCCGTTTCCCTGTCCAAAAAGCAAACAGACCGGAGCTTCGAAAATACAGAGAAAAGCCATTCGACACACTCATTCTCTCTCTATCTCTCGTATCCTCCTGACTCACTGTGCTCAGTGGTGGACAAAAGTGTGTGCATTTGCTCTCTCCCAGAGAGCATCCTTCAACATCCGGAAAATGAAAACAACACAATAAAAGGAGCAAAGGTTTATACTATAGTTACTATATTTCACCGTATTTCAATAAATATATACATTTTTTCCAGTATGGGTGAGAGAGGCAATGCAATAGGGGGAGAAGGGGAGAAGGATGCAATAAAACTTTTTGTAAACTATTCAAATATTAGCTAGAAGAACTAGGCAAAAACAGGGATGGGAACGAGAGAAGAAGCGAGAAACCCAATATTATCAAGTAGTTAGTGTTCCAGAATGCGCAGGTTTCCGGAGACGATCTTATTCTCGAGAATCGATCCAGGTGGAATGTCGATACGATCACCATGATTGGCAATAATGATGACAGTACCCTGCAAAATCAACATTTTTGAGAATAAGAACATATTCTGAATCATACCTTCAACGATACATCTTTGCCGAACCAAACGTCTCCGGATAC</canonical>
            <polymorphic>ATTACCGTAACCAAAAACAATTCAAATATTTTCCGGGTTTTTTATCTCGCGAGATCTCGGTTTTTTAGGGCTTTTCAGTTTTCTCAAATTTTTCATTTTTCGACTTTTTTAGTGAAAAATAACAGAAAAATAGTCGAAAATCAATTTAAAAAACTGGAGAATAAATCCTGACAATGCAAGTATTTTTAGGTTACTGTAGTTGTCGTTGCGGGACCTTCGGCTACGGTCAACGGCGTTTAACTTCGAAAATACGGAATTTGAAAGATGCGCTGTTCAAATTTGGGAAGATGAGCTGACAAGCGATAGCAGGATGTTTCGGGCTGTCAAGAGAGACGAAAAAACCGATATTTACATAAAATGAACAAAAAATAGTCACTGGTGGGCCACCACTCCGTTTCCCTGTCCAAAAAGCAAACAGACCGGAGCTTCGAAAATACAGAGAAAAGCCATTCGACACACTCATTCTCTCTCTATCTCTCGTATCCTCCTGACTCACTGTRCTCAGTGGTGGACAAAAGTGTGTGCATTTGCTCTCTCCCAGAGAGCATCCTTCAACATCCGGAAAATGAAAACAACACAATAAAAGGAGCAAAGGTTTATACTATAGTTACTATATTTCACCGTATTTCAATAAATATATACATTTTTTCCAGTATGGGTGAGAGAGGCAATGCAATAGGGGGAGAAGGGGAGAAGGATGCAATAAAACTTTTTGTAAACTATTCAAATATTAGCTAGAAGAACTAGGCAAAAACAGGGATGGGAACGAGAGAAGAAGCGAGAAACCCAATATTATCAAGTAGTTAGTGTTCCAGAATGCGCAGGTTTCCGGAGACGATCTTATTCTCGAGAATCGATCCAGGTGGAATGTCGATACGATCACCATGATTGGCAATAATGATGACAGTACCCTGCAAAATCAACATTTTTGAGAATAAGAACATATTCTGAATCATACCTTCAACGATACATCTTTGCCGAACCAAACGTCTCCGGATAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>261 148 118 114 67 56 53 43 41 37 17 10 7 6 5 5 3 3 2 2 2</canonical_bands>
                <polymorphic_bands>261 148 118 114 67 56 53 43 41 37 17 12 10 6 5 3 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTGTCAAGAGAGACGAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATGTTGAAGGATGCTCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GCTGTCAAGAGAGACGAAAAAACCGATATTTACATAAAATGAACAAAAAATAGTCACTGGTGGGCCACCACTCCGTTTCCCTGTCCAAAAAGCAAACAGACCGGAGCTTCGAAAATACAGAGAAAAGCCATTCGACACACTCATTCTCTCTCTATCTCTCGTATCCTCCTGACTCACTGTGCTCAGTGGTGGACAAAAGTGTGTGCATTTGCTCTCTCCCAGAGAGCATCCTTCAACAT</canonical_amplicon>
		<polymorphic_amplicon>GCTGTCAAGAGAGACGAAAAAACCGATATTTACATAAAATGAACAAAAAATAGTCACTGGTGGGCCACCACTCCGTTTCCCTGTCCAAAAAGCAAACAGACCGGAGCTTCGAAAATACAGAGAAAAGCCATTCGACACACTCATTCTCTCTCTATCTCTCGTATCCTCCTGACTCACTGTRCTCAGTGGTGGACAAAAGTGTGTGCATTTGCTCTCTCCCAGAGAGCATCCTTCAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28852</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>470937</contig_pos>
        <strand>+</strand>
        <context>ATCCAGGTGG[A/G]ATGTCGATAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGCGCAGGTTTCCGGAGACGATCTTATTCTCGAGAATCGATCCAGGTGG</left_flank>
        <right_flank>ATGTCGATACGATCACCATGATTGGCAATAATGATGACAGTACCCTGCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAGTCACTGGTGGGCCACCACTCCGTTTCCCTGTCCAAAAAGCAAACAGACCGGAGCTTCGAAAATACAGAGAAAAGCCATTCGACACACTCATTCTCTCTCTATCTCTCGTATCCTCCTGACTCACTGTGCTCAGTGGTGGACAAAAGTGTGTGCATTTGCTCTCTCCCAGAGAGCATCCTTCAACATCCGGAAAATGAAAACAACACAATAAAAGGAGCAAAGGTTTATACTATAGTTACTATATTTCACCGTATTTCAATAAATATATACATTTTTTCCAGTATGGGTGAGAGAGGCAATGCAATAGGGGGAGAAGGGGAGAAGGATGCAATAAAACTTTTTGTAAACTATTCAAATATTAGCTAGAAGAACTAGGCAAAAACAGGGATGGGAACGAGAGAAGAAGCGAGAAACCCAATATTATCAAGTAGTTAGTGTTCCAGAATGCGCAGGTTTCCGGAGACGATCTTATTCTCGAGAATCGATCCAGGTGGAATGTCGATACGATCACCATGATTGGCAATAATGATGACAGTACCCTGCAAAATCAACATTTTTGAGAATAAGAACATATTCTGAATCATACCTTCAACGATACATCTTTGCCGAACCAAACGTCTCCGGATACGGTCAAATGATCCAACTCGAGCAAGTCTGGAATACCATTGAAACGGCCCAAGTAGTCCTTGACTTTATCGAATGAAGATCCCAGTTTGACGAGTGGGGTTGTTGGGAAAGATCTCTGGTGAGATAGGGTTAGGGATCCATTATCAATATCGTAGAGGTTTGACATCAGGAGAAGAAGATCAGAAGTCTTTTTGACTGGCAAGAAACGGGAACGCGGCACATTCACTCCAACGGCTCCACGGAACGATTTGATGGCTGCTCCGGCAGCAGTTTCCAGTTGGATGACATCGAGTCCACGGTCGAGATGTTTTGGATTAACAATGACCTCCATTTCAAGCTTATTTTCAGTCACAACTCTCTTCATAGCA</canonical>
            <polymorphic>AATAGTCACTGGTGGGCCACCACTCCGTTTCCCTGTCCAAAAAGCAAACAGACCGGAGCTTCGAAAATACAGAGAAAAGCCATTCGACACACTCATTCTCTCTCTATCTCTCGTATCCTCCTGACTCACTGTGCTCAGTGGTGGACAAAAGTGTGTGCATTTGCTCTCTCCCAGAGAGCATCCTTCAACATCCGGAAAATGAAAACAACACAATAAAAGGAGCAAAGGTTTATACTATAGTTACTATATTTCACCGTATTTCAATAAATATATACATTTTTTCCAGTATGGGTGAGAGAGGCAATGCAATAGGGGGAGAAGGGGAGAAGGATGCAATAAAACTTTTTGTAAACTATTCAAATATTAGCTAGAAGAACTAGGCAAAAACAGGGATGGGAACGAGAGAAGAAGCGAGAAACCCAATATTATCAAGTAGTTAGTGTTCCAGAATGCGCAGGTTTCCGGAGACGATCTTATTCTCGAGAATCGATCCAGGTGGRATGTCGATACGATCACCATGATTGGCAATAATGATGACAGTACCCTGCAAAATCAACATTTTTGAGAATAAGAACATATTCTGAATCATACCTTCAACGATACATCTTTGCCGAACCAAACGTCTCCGGATACGGTCAAATGATCCAACTCGAGCAAGTCTGGAATACCATTGAAACGGCCCAAGTAGTCCTTGACTTTATCGAATGAAGATCCCAGTTTGACGAGTGGGGTTGTTGGGAAAGATCTCTGGTGAGATAGGGTTAGGGATCCATTATCAATATCGTAGAGGTTTGACATCAGGAGAAGAAGATCAGAAGTCTTTTTGACTGGCAAGAAACGGGAACGCGGCACATTCACTCCAACGGCTCCACGGAACGATTTGATGGCTGCTCCGGCAGCAGTTTCCAGTTGGATGACATCGAGTCCACGGTCGAGATGTTTTGGATTAACAATGACCTCCATTTCAAGCTTATTTTCAGTCACAACTCTCTTCATAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGCTAGAAGAACTAGGCAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAGATGTATCGTTGAAGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTAGCTAGAAGAACTAGGCAAAAACAGGGATGGGAACGAGAGAAGAAGCGAGAAACCCAATATTATCAAGTAGTTAGTGTTCCAGAATGCGCAGGTTTCCGGAGACGATCTTATTCTCGAGAATCGATCCAGGTGGAATGTCGATACGATCACCATGATTGGCAATAATGATGACAGTACCCTGCAAAATCAACATTTTTGAGAATAAGAACATATTCTGAATCATACCTTCAACGATACATCTTTG</canonical_amplicon>
		<polymorphic_amplicon>TTAGCTAGAAGAACTAGGCAAAAACAGGGATGGGAACGAGAGAAGAAGCGAGAAACCCAATATTATCAAGTAGTTAGTGTTCCAGAATGCGCAGGTTTCCGGAGACGATCTTATTCTCGAGAATCGATCCAGGTGGRATGTCGATACGATCACCATGATTGGCAATAATGATGACAGTACCCTGCAAAATCAACATTTTTGAGAATAAGAACATATTCTGAATCATACCTTCAACGATACATCTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28853</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>501286</contig_pos>
        <strand></strand>
        <context>TTATCAGTTC[A/G]CATGGCTCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATCTGTTAGTTTTGATGCAAACGCCGTTTCAATACTTCTTATCAGTTC</left_flank>
        <right_flank>CATGGCTCTTGATTTTCAATTTCCGCTTTTGTTAAATCTACCGTAATTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACGATTAGTTTCAATCGAATACACAAAGTCGACAGTGAGTAAAGACTGGCGTTGCACACTTTTGTGCTGGATGTAGTACGCTTTTTCCTGGAAAGGAGACAATTAAATATTCTGTAGGCGGATTGGGTCACATCACAATATTCAACTATCTAGATGTCTATCTAAAACTTTATTCTAAGCTAATATCAAACCAGAGATCTCAATTTGACAAGTTTATGATGAACGTAGTAGGTTTTATCCTGAAATGTGTATGCATTCGGATTTAAACATATTTGTCCTAAAATACAAAAATTACCACTCTGCTCAAAAACAGTGGATCCAAAGTTTGTCTCGTCTCTATCAACTCTCCAACATTTGCTCCAATTCGACTAGCTGCTTTCAATCGATCTTGCCGTTCATAGGTTATGATCTACAAGTTTAAAATTTCCTCTGAAGTTTAATTAAACCTACATCTGTTAGTTTTGATGCAAACGCCGTTTCAATACTTCTTATCAGTTCACATGGCTCTTGATTTTCAATTTCCGCTTTTGTTAAATCTACCGTAATTTTTTCCCCTAATAAATCCACCAATTCTAATTGATTTCTTCGATTGAAACATAATCTTCTCAACGATGGAAAACAATCTTTCAGCAGTAATTTCAGTCTTGAATCGATTGTAGTCGTTGAGAAAAGATTCAGAAGACTCAGTTCAGACGAAAGACACAGTCTCGCATTTATCATTCTCATTCCATCGAGCAGTCCACGAACTCCTTGAATTATTACAGTAACCATTGAACGGATTTTCTCTATCCAACAAGGCAAATGGGGTAGTTGCATCACTCGATAAATGGTCGCATCTTTTAGAACGTTCTTCTCTATGGTTAGGAAATATTTGGCACAAGTTCTCAGTAATTCGTATTCCTTCTGTAAACAATTCTTCTGATTTTTGGGTTACATTGAACAGATTTTTAACCTGTAAAGTGTCTCTACAAGTCACAAAAATATTGGCGACTCTCATCC</canonical>
            <polymorphic>AACGATTAGTTTCAATCGAATACACAAAGTCGACAGTGAGTAAAGACTGGCGTTGCACACTTTTGTGCTGGATGTAGTACGCTTTTTCCTGGAAAGGAGACAATTAAATATTCTGTAGGCGGATTGGGTCACATCACAATATTCAACTATCTAGATGTCTATCTAAAACTTTATTCTAAGCTAATATCAAACCAGAGATCTCAATTTGACAAGTTTATGATGAACGTAGTAGGTTTTATCCTGAAATGTGTATGCATTCGGATTTAAACATATTTGTCCTAAAATACAAAAATTACCACTCTGCTCAAAAACAGTGGATCCAAAGTTTGTCTCGTCTCTATCAACTCTCCAACATTTGCTCCAATTCGACTAGCTGCTTTCAATCGATCTTGCCGTTCATAGGTTATGATCTACAAGTTTAAAATTTCCTCTGAAGTTTAATTAAACCTACATCTGTTAGTTTTGATGCAAACGCCGTTTCAATACTTCTTATCAGTTCRCATGGCTCTTGATTTTCAATTTCCGCTTTTGTTAAATCTACCGTAATTTTTTCCCCTAATAAATCCACCAATTCTAATTGATTTCTTCGATTGAAACATAATCTTCTCAACGATGGAAAACAATCTTTCAGCAGTAATTTCAGTCTTGAATCGATTGTAGTCGTTGAGAAAAGATTCAGAAGACTCAGTTCAGACGAAAGACACAGTCTCGCATTTATCATTCTCATTCCATCGAGCAGTCCACGAACTCCTTGAATTATTACAGTAACCATTGAACGGATTTTCTCTATCCAACAAGGCAAATGGGGTAGTTGCATCACTCGATAAATGGTCGCATCTTTTAGAACGTTCTTCTCTATGGTTAGGAAATATTTGGCACAAGTTCTCAGTAATTCGTATTCCTTCTGTAAACAATTCTTCTGATTTTTGGGTTACATTGAACAGATTTTTAACCTGTAAAGTGTCTCTACAAGTCACAAAAATATTGGCGACTCTCATCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>184 136 114 85 76 67 64 59 48 40 24 24 19 18 14 13 8 5 2</canonical_bands>
                <polymorphic_bands>251 136 114 85 76 64 59 48 40 24 24 19 18 14 13 8 5 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>467 243 168 91 31</canonical_bands>
                <polymorphic_bands>710 168 91 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGTTCATAGGTTATGATCTACA</pcr_primer_p1>
		<pcr_primer_p2>TGAAATTACTGCTGAAAGATTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCGTTCATAGGTTATGATCTACAAGTTTAAAATTTCCTCTGAAGTTTAATTAAACCTACATCTGTTAGTTTTGATGCAAACGCCGTTTCAATACTTCTTATCAGTTCACATGGCTCTTGATTTTCAATTTCCGCTTTTGTTAAATCTACCGTAATTTTTTCCCCTAATAAATCCACCAATTCTAATTGATTTCTTCGATTGAAACATAATCTTCTCAACGATGGAAAACAATCTTTCAGCAGTAATTTCA</canonical_amplicon>
		<polymorphic_amplicon>CCGTTCATAGGTTATGATCTACAAGTTTAAAATTTCCTCTGAAGTTTAATTAAACCTACATCTGTTAGTTTTGATGCAAACGCCGTTTCAATACTTCTTATCAGTTCRCATGGCTCTTGATTTTCAATTTCCGCTTTTGTTAAATCTACCGTAATTTTTTCCCCTAATAAATCCACCAATTCTAATTGATTTCTTCGATTGAAACATAATCTTCTCAACGATGGAAAACAATCTTTCAGCAGTAATTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28854</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>584809</contig_pos>
        <strand></strand>
        <context>cttattaacc[G/A]gtactgtAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACCCCCCCTCAAAATCAAGTGAAAAACGCGTTTTTGTATTCTTATTAACC</left_flank>
        <right_flank>GTACTGTAGAATCCTTTCTATTGTAGCCTCGCCGAGAATTCTGTTCTACA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGGGTTGGATATCTTTGAAGAACACGATTCGAGGTGAGGAGAGGAAAGAGAAGATCAAAAGTTTGACGTCAAAATCGGCTATTTTTGGAGATGGGAACGGAAGGAGAAGGAGGCAGATCTTGTGATGAACAAGTTAAATTTTGAAGTTAAGTTAAGTAACCAGAAATCGAAATGGAGATCTCGTGATATTGAAAATGTGTCAGTATTGTAAAATCAAGAATAAAATGTGTTTTTAGTACATTAAACTTTGTGAATAGGACTCAAATAAGCTATATTTTTCTTCAAAATTCCTAGTTTTCAGTTGTTTGCCGATTTTTGAAAGACCCCTACCTTTTTTCATTTTTTTTTCAGTACAAACACAGGAAAAAGGGGTCCAAAATTCTGCGAATGCAAACTCAGGCGCCGCCGGTTACTTCTGGCCGGAGCTTGGTCAGATTCCGGCAAAGACCCCCCCTCAAAATCAAGTGAAAAACGCGTTTTTGTATTCTTATTAACCGGTACTGTAGAATCCTTTCTATTGTAGCCTCGCCGAGAATTCTGTTCTACAGTATCCGTAGTTTTTATATGTTGAGTTACTCTGCAAAACCATTGTATTCTTCTCCTCAACTTCATCTCTTTGATCCTGTGACGTAATGTGTAAAATCTAAAACACAAAACTCCCACACACTGCACCCACTGGCTTACAATTCTTCACCTTAATTTCGTCCATTCATCTCAGTTTCCCATATCAGTTTGTCTATGAAATACGACCCTGATAACCTGTTTATCTCCTTTTTTCCTCCTCTTTAAAGAACAAAATTGTTGTATATTACACTAAAAAATGCTTCTGGGTTGATTCTGCAAAATTAGAAGAAGAAGCCTATTTTGATGAACAATTATTTGAATTTATTGTTTATTTATTACTAAACACGAATGACAACGAAATGAACAAGAAATTGCAAAATAATAATATAATAATATAAAGAGACCCGACTGAGAAATTAATAAAAACAAAATG</canonical>
            <polymorphic>TTTTGGGTTGGATATCTTTGAAGAACACGATTCGAGGTGAGGAGAGGAAAGAGAAGATCAAAAGTTTGACGTCAAAATCGGCTATTTTTGGAGATGGGAACGGAAGGAGAAGGAGGCAGATCTTGTGATGAACAAGTTAAATTTTGAAGTTAAGTTAAGTAACCAGAAATCGAAATGGAGATCTCGTGATATTGAAAATGTGTCAGTATTGTAAAATCAAGAATAAAATGTGTTTTTAGTACATTAAACTTTGTGAATAGGACTCAAATAAGCTATATTTTTCTTCAAAATTCCTAGTTTTCAGTTGTTTGCCGATTTTTGAAAGACCCCTACCTTTTTTCATTTTTTTTTCAGTACAAACACAGGAAAAAGGGGTCCAAAATTCTGCGAATGCAAACTCAGGCGCCGCCGGTTACTTCTGGCCGGAGCTTGGTCAGATTCCGGCAAAGACCCCCCCTCAAAATCAAGTGAAAAACGCGTTTTTGTATTCTTATTAACCRGTACTGTAGAATCCTTTCTATTGTAGCCTCGCCGAGAATTCTGTTCTACAGTATCCGTAGTTTTTATATGTTGAGTTACTCTGCAAAACCATTGTATTCTTCTCCTCAACTTCATCTCTTTGATCCTGTGACGTAATGTGTAAAATCTAAAACACAAAACTCCCACACACTGCACCCACTGGCTTACAATTCTTCACCTTAATTTCGTCCATTCATCTCAGTTTCCCATATCAGTTTGTCTATGAAATACGACCCTGATAACCTGTTTATCTCCTTTTTTCCTCCTCTTTAAAGAACAAAATTGTTGTATATTACACTAAAAAATGCTTCTGGGTTGATTCTGCAAAATTAGAAGAAGAAGCCTATTTTGATGAACAATTATTTGAATTTATTGTTTATTTATTACTAAACACGAATGACAACGAAATGAACAAGAAATTGCAAAATAATAATATAATAATATAAAGAGACCCGACTGAGAAATTAATAAAAACAAAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACCGGT</site>
                <isoschizomers>
                    <enzyme>AgeI</enzyme>
                    <enzyme>AsiAI</enzyme>
                    <enzyme>BshTI</enzyme>
                    <enzyme>CspAI</enzyme>
                    <enzyme>PinAI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>503 408 89</canonical_bands>
                <polymorphic_bands>592 408</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 409 57 18 14</canonical_bands>
                <polymorphic_bands>559 409 18 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTGAATAGGACTCAAATAAGC</pcr_primer_p1>
		<pcr_primer_p2>TGCAGAGTAACTCAACATATAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>335</pcr_amplicon_size>
		<canonical_amplicon>TTGTGAATAGGACTCAAATAAGCTATATTTTTCTTCAAAATTCCTAGTTTTCAGTTGTTTGCCGATTTTTGAAAGACCCCTACCTTTTTTCATTTTTTTTTCAGTACAAACACAGGAAAAAGGGGTCCAAAATTCTGCGAATGCAAACTCAGGCGCCGCCGGTTACTTCTGGCCGGAGCTTGGTCAGATTCCGGCAAAGACCCCCCCTCAAAATCAAGTGAAAAACGCGTTTTTGTATTCTTATTAACCGGTACTGTAGAATCCTTTCTATTGTAGCCTCGCCGAGAATTCTGTTCTACAGTATCCGTAGTTTTTATATGTTGAGTTACTCTGCA</canonical_amplicon>
		<polymorphic_amplicon>TTGTGAATAGGACTCAAATAAGCTATATTTTTCTTCAAAATTCCTAGTTTTCAGTTGTTTGCCGATTTTTGAAAGACCCCTACCTTTTTTCATTTTTTTTTCAGTACAAACACAGGAAAAAGGGGTCCAAAATTCTGCGAATGCAAACTCAGGCGCCGCCGGTTACTTCTGGCCGGAGCTTGGTCAGATTCCGGCAAAGACCCCCCCTCAAAATCAAGTGAAAAACGCGTTTTTGTATTCTTATTAACCRGTACTGTAGAATCCTTTCTATTGTAGCCTCGCCGAGAATTCTGTTCTACAGTATCCGTAGTTTTTATATGTTGAGTTACTCTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28855</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>584866</contig_pos>
        <strand>+</strand>
        <context>TACAGTATCC[G/T]TAGTTTTTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAGAATCCTTTCTATTGTAGCCTCGCCGAGAATTCTGTTCTACAGTATCC</left_flank>
        <right_flank>TAGTTTTTATATGTTGAGTTACTCTGCAAAACCATTGTATTCTTCTCCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAAGTTTGACGTCAAAATCGGCTATTTTTGGAGATGGGAACGGAAGGAGAAGGAGGCAGATCTTGTGATGAACAAGTTAAATTTTGAAGTTAAGTTAAGTAACCAGAAATCGAAATGGAGATCTCGTGATATTGAAAATGTGTCAGTATTGTAAAATCAAGAATAAAATGTGTTTTTAGTACATTAAACTTTGTGAATAGGACTCAAATAAGCTATATTTTTCTTCAAAATTCCTAGTTTTCAGTTGTTTGCCGATTTTTGAAAGACCCCTACCTTTTTTCATTTTTTTTTCAGTACAAACACAGGAAAAAGGGGTCCAAAATTCTGCGAATGCAAACTCAGGCGCCGCCGGTTACTTCTGGCCGGAGCTTGGTCAGATTCCGGCAAAGACCCCCCCTCAAAATCAAGTGAAAAACGCGTTTTTGTATTCTTATTAACCGGTACTGTAGAATCCTTTCTATTGTAGCCTCGCCGAGAATTCTGTTCTACAGTATCCGTAGTTTTTATATGTTGAGTTACTCTGCAAAACCATTGTATTCTTCTCCTCAACTTCATCTCTTTGATCCTGTGACGTAATGTGTAAAATCTAAAACACAAAACTCCCACACACTGCACCCACTGGCTTACAATTCTTCACCTTAATTTCGTCCATTCATCTCAGTTTCCCATATCAGTTTGTCTATGAAATACGACCCTGATAACCTGTTTATCTCCTTTTTTCCTCCTCTTTAAAGAACAAAATTGTTGTATATTACACTAAAAAATGCTTCTGGGTTGATTCTGCAAAATTAGAAGAAGAAGCCTATTTTGATGAACAATTATTTGAATTTATTGTTTATTTATTACTAAACACGAATGACAACGAAATGAACAAGAAATTGCAAAATAATAATATAATAATATAAAGAGACCCGACTGAGAAATTAATAAAAACAAAATGGAGAATTAAACATGAACTTCCTGGGTCCTCCCTGTTAGTATGGACCATAACGACTGC</canonical>
            <polymorphic>TCAAAAGTTTGACGTCAAAATCGGCTATTTTTGGAGATGGGAACGGAAGGAGAAGGAGGCAGATCTTGTGATGAACAAGTTAAATTTTGAAGTTAAGTTAAGTAACCAGAAATCGAAATGGAGATCTCGTGATATTGAAAATGTGTCAGTATTGTAAAATCAAGAATAAAATGTGTTTTTAGTACATTAAACTTTGTGAATAGGACTCAAATAAGCTATATTTTTCTTCAAAATTCCTAGTTTTCAGTTGTTTGCCGATTTTTGAAAGACCCCTACCTTTTTTCATTTTTTTTTCAGTACAAACACAGGAAAAAGGGGTCCAAAATTCTGCGAATGCAAACTCAGGCGCCGCCGGTTACTTCTGGCCGGAGCTTGGTCAGATTCCGGCAAAGACCCCCCCTCAAAATCAAGTGAAAAACGCGTTTTTGTATTCTTATTAACCGGTACTGTAGAATCCTTTCTATTGTAGCCTCGCCGAGAATTCTGTTCTACAGTATCCKTAGTTTTTATATGTTGAGTTACTCTGCAAAACCATTGTATTCTTCTCCTCAACTTCATCTCTTTGATCCTGTGACGTAATGTGTAAAATCTAAAACACAAAACTCCCACACACTGCACCCACTGGCTTACAATTCTTCACCTTAATTTCGTCCATTCATCTCAGTTTCCCATATCAGTTTGTCTATGAAATACGACCCTGATAACCTGTTTATCTCCTTTTTTCCTCCTCTTTAAAGAACAAAATTGTTGTATATTACACTAAAAAATGCTTCTGGGTTGATTCTGCAAAATTAGAAGAAGAAGCCTATTTTGATGAACAATTATTTGAATTTATTGTTTATTTATTACTAAACACGAATGACAACGAAATGAACAAGAAATTGCAAAATAATAATATAATAATATAAAGAGACCCGACTGAGAAATTAATAAAAACAAAATGGAGAATTAAACATGAACTTCCTGGGTCCTCCCTGTTAGTATGGACCATAACGACTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTGAATAGGACTCAAATAAGC</pcr_primer_p1>
		<pcr_primer_p2>AGGATCAAAGAGATGAAGTTGA</pcr_primer_p2>
		<pcr_amplicon_size>377</pcr_amplicon_size>
		<canonical_amplicon>TTGTGAATAGGACTCAAATAAGCTATATTTTTCTTCAAAATTCCTAGTTTTCAGTTGTTTGCCGATTTTTGAAAGACCCCTACCTTTTTTCATTTTTTTTTCAGTACAAACACAGGAAAAAGGGGTCCAAAATTCTGCGAATGCAAACTCAGGCGCCGCCGGTTACTTCTGGCCGGAGCTTGGTCAGATTCCGGCAAAGACCCCCCCTCAAAATCAAGTGAAAAACGCGTTTTTGTATTCTTATTAACCGGTACTGTAGAATCCTTTCTATTGTAGCCTCGCCGAGAATTCTGTTCTACAGTATCCGTAGTTTTTATATGTTGAGTTACTCTGCAAAACCATTGTATTCTTCTCCTCAACTTCATCTCTTTGATCCT</canonical_amplicon>
		<polymorphic_amplicon>TTGTGAATAGGACTCAAATAAGCTATATTTTTCTTCAAAATTCCTAGTTTTCAGTTGTTTGCCGATTTTTGAAAGACCCCTACCTTTTTTCATTTTTTTTTCAGTACAAACACAGGAAAAAGGGGTCCAAAATTCTGCGAATGCAAACTCAGGCGCCGCCGGTTACTTCTGGCCGGAGCTTGGTCAGATTCCGGCAAAGACCCCCCCTCAAAATCAAGTGAAAAACGCGTTTTTGTATTCTTATTAACCGGTACTGTAGAATCCTTTCTATTGTAGCCTCGCCGAGAATTCTGTTCTACAGTATCCKTAGTTTTTATATGTTGAGTTACTCTGCAAAACCATTGTATTCTTCTCCTCAACTTCATCTCTTTGATCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28856</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>584908</contig_pos>
        <strand>+</strand>
        <context>CCATTGTATT[A/C]TTCTCYTCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAGTATCCGTAGTTTTTATATGTTGAGTTACTCTGCAAAACCATTGTATT</left_flank>
        <right_flank>TTCTCCTCAACTTCATCTCTTTGATCCTGTGACGTAATGTGTAAAATCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGGAAGGAGAAGGAGGCAGATCTTGTGATGAACAAGTTAAATTTTGAAGTTAAGTTAAGTAACCAGAAATCGAAATGGAGATCTCGTGATATTGAAAATGTGTCAGTATTGTAAAATCAAGAATAAAATGTGTTTTTAGTACATTAAACTTTGTGAATAGGACTCAAATAAGCTATATTTTTCTTCAAAATTCCTAGTTTTCAGTTGTTTGCCGATTTTTGAAAGACCCCTACCTTTTTTCATTTTTTTTTCAGTACAAACACAGGAAAAAGGGGTCCAAAATTCTGCGAATGCAAACTCAGGCGCCGCCGGTTACTTCTGGCCGGAGCTTGGTCAGATTCCGGCAAAGACCCCCCCTCAAAATCAAGTGAAAAACGCGTTTTTGTATTCTTATTAACCGGTACTGTAGAATCCTTTCTATTGTAGCCTCGCCGAGAATTCTGTTCTACAGTATCCGTAGTTTTTATATGTTGAGTTACTCTGCAAAACCATTGTATTCTTCTCCTCAACTTCATCTCTTTGATCCTGTGACGTAATGTGTAAAATCTAAAACACAAAACTCCCACACACTGCACCCACTGGCTTACAATTCTTCACCTTAATTTCGTCCATTCATCTCAGTTTCCCATATCAGTTTGTCTATGAAATACGACCCTGATAACCTGTTTATCTCCTTTTTTCCTCCTCTTTAAAGAACAAAATTGTTGTATATTACACTAAAAAATGCTTCTGGGTTGATTCTGCAAAATTAGAAGAAGAAGCCTATTTTGATGAACAATTATTTGAATTTATTGTTTATTTATTACTAAACACGAATGACAACGAAATGAACAAGAAATTGCAAAATAATAATATAATAATATAAAGAGACCCGACTGAGAAATTAATAAAAACAAAATGGAGAATTAAACATGAACTTCCTGGGTCCTCCCTGTTAGTATGGACCATAACGACTGCCAACTTTCCATAGACGCCAAAGCTCCGAAATCGATAAATCTG</canonical>
            <polymorphic>ACGGAAGGAGAAGGAGGCAGATCTTGTGATGAACAAGTTAAATTTTGAAGTTAAGTTAAGTAACCAGAAATCGAAATGGAGATCTCGTGATATTGAAAATGTGTCAGTATTGTAAAATCAAGAATAAAATGTGTTTTTAGTACATTAAACTTTGTGAATAGGACTCAAATAAGCTATATTTTTCTTCAAAATTCCTAGTTTTCAGTTGTTTGCCGATTTTTGAAAGACCCCTACCTTTTTTCATTTTTTTTTCAGTACAAACACAGGAAAAAGGGGTCCAAAATTCTGCGAATGCAAACTCAGGCGCCGCCGGTTACTTCTGGCCGGAGCTTGGTCAGATTCCGGCAAAGACCCCCCCTCAAAATCAAGTGAAAAACGCGTTTTTGTATTCTTATTAACCGGTACTGTAGAATCCTTTCTATTGTAGCCTCGCCGAGAATTCTGTTCTACAGTATCCGTAGTTTTTATATGTTGAGTTACTCTGCAAAACCATTGTATTMTTCTCCTCAACTTCATCTCTTTGATCCTGTGACGTAATGTGTAAAATCTAAAACACAAAACTCCCACACACTGCACCCACTGGCTTACAATTCTTCACCTTAATTTCGTCCATTCATCTCAGTTTCCCATATCAGTTTGTCTATGAAATACGACCCTGATAACCTGTTTATCTCCTTTTTTCCTCCTCTTTAAAGAACAAAATTGTTGTATATTACACTAAAAAATGCTTCTGGGTTGATTCTGCAAAATTAGAAGAAGAAGCCTATTTTGATGAACAATTATTTGAATTTATTGTTTATTTATTACTAAACACGAATGACAACGAAATGAACAAGAAATTGCAAAATAATAATATAATAATATAAAGAGACCCGACTGAGAAATTAATAAAAACAAAATGGAGAATTAAACATGAACTTCCTGGGTCCTCCCTGTTAGTATGGACCATAACGACTGCCAACTTTCCATAGACGCCAAAGCTCCGAAATCGATAAATCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCGAGAATTCTGTTCTACA</pcr_primer_p1>
		<pcr_primer_p2>TTATCAGGGTCGTATTTCATAGA</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>GCCGAGAATTCTGTTCTACAGTATCCGTAGTTTTTATATGTTGAGTTACTCTGCAAAACCATTGTATTCTTCTCCTCAACTTCATCTCTTTGATCCTGTGACGTAATGTGTAAAATCTAAAACACAAAACTCCCACACACTGCACCCACTGGCTTACAATTCTTCACCTTAATTTCGTCCATTCATCTCAGTTTCCCATATCAGTTTGTCTATGAAATACGACCCTGATAA</canonical_amplicon>
		<polymorphic_amplicon>GCCGAGAATTCTGTTCTACAGTATCCGTAGTTTTTATATGTTGAGTTACTCTGCAAAACCATTGTATTMTTCTCCTCAACTTCATCTCTTTGATCCTGTGACGTAATGTGTAAAATCTAAAACACAAAACTCCCACACACTGCACCCACTGGCTTACAATTCTTCACCTTAATTTCGTCCATTCATCTCAGTTTCCCATATCAGTTTGTCTATGAAATACGACCCTGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28857</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>584914</contig_pos>
        <strand>+</strand>
        <context>TATTMTTCTC[C/T]TCAACTTCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGTAGTTTTTATATGTTGAGTTACTCTGCAAAACCATTGTATTCTTCTC</left_flank>
        <right_flank>TCAACTTCATCTCTTTGATCCTGTGACGTAATGTGTAAAATCTAAAACAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGAAGGAGGCAGATCTTGTGATGAACAAGTTAAATTTTGAAGTTAAGTTAAGTAACCAGAAATCGAAATGGAGATCTCGTGATATTGAAAATGTGTCAGTATTGTAAAATCAAGAATAAAATGTGTTTTTAGTACATTAAACTTTGTGAATAGGACTCAAATAAGCTATATTTTTCTTCAAAATTCCTAGTTTTCAGTTGTTTGCCGATTTTTGAAAGACCCCTACCTTTTTTCATTTTTTTTTCAGTACAAACACAGGAAAAAGGGGTCCAAAATTCTGCGAATGCAAACTCAGGCGCCGCCGGTTACTTCTGGCCGGAGCTTGGTCAGATTCCGGCAAAGACCCCCCCTCAAAATCAAGTGAAAAACGCGTTTTTGTATTCTTATTAACCGGTACTGTAGAATCCTTTCTATTGTAGCCTCGCCGAGAATTCTGTTCTACAGTATCCGTAGTTTTTATATGTTGAGTTACTCTGCAAAACCATTGTATTCTTCTCCTCAACTTCATCTCTTTGATCCTGTGACGTAATGTGTAAAATCTAAAACACAAAACTCCCACACACTGCACCCACTGGCTTACAATTCTTCACCTTAATTTCGTCCATTCATCTCAGTTTCCCATATCAGTTTGTCTATGAAATACGACCCTGATAACCTGTTTATCTCCTTTTTTCCTCCTCTTTAAAGAACAAAATTGTTGTATATTACACTAAAAAATGCTTCTGGGTTGATTCTGCAAAATTAGAAGAAGAAGCCTATTTTGATGAACAATTATTTGAATTTATTGTTTATTTATTACTAAACACGAATGACAACGAAATGAACAAGAAATTGCAAAATAATAATATAATAATATAAAGAGACCCGACTGAGAAATTAATAAAAACAAAATGGAGAATTAAACATGAACTTCCTGGGTCCTCCCTGTTAGTATGGACCATAACGACTGCCAACTTTCCATAGACGCCAAAGCTCCGAAATCGATAAATCTGAAGAAT</canonical>
            <polymorphic>GGAGAAGGAGGCAGATCTTGTGATGAACAAGTTAAATTTTGAAGTTAAGTTAAGTAACCAGAAATCGAAATGGAGATCTCGTGATATTGAAAATGTGTCAGTATTGTAAAATCAAGAATAAAATGTGTTTTTAGTACATTAAACTTTGTGAATAGGACTCAAATAAGCTATATTTTTCTTCAAAATTCCTAGTTTTCAGTTGTTTGCCGATTTTTGAAAGACCCCTACCTTTTTTCATTTTTTTTTCAGTACAAACACAGGAAAAAGGGGTCCAAAATTCTGCGAATGCAAACTCAGGCGCCGCCGGTTACTTCTGGCCGGAGCTTGGTCAGATTCCGGCAAAGACCCCCCCTCAAAATCAAGTGAAAAACGCGTTTTTGTATTCTTATTAACCGGTACTGTAGAATCCTTTCTATTGTAGCCTCGCCGAGAATTCTGTTCTACAGTATCCGTAGTTTTTATATGTTGAGTTACTCTGCAAAACCATTGTATTCTTCTCYTCAACTTCATCTCTTTGATCCTGTGACGTAATGTGTAAAATCTAAAACACAAAACTCCCACACACTGCACCCACTGGCTTACAATTCTTCACCTTAATTTCGTCCATTCATCTCAGTTTCCCATATCAGTTTGTCTATGAAATACGACCCTGATAACCTGTTTATCTCCTTTTTTCCTCCTCTTTAAAGAACAAAATTGTTGTATATTACACTAAAAAATGCTTCTGGGTTGATTCTGCAAAATTAGAAGAAGAAGCCTATTTTGATGAACAATTATTTGAATTTATTGTTTATTTATTACTAAACACGAATGACAACGAAATGAACAAGAAATTGCAAAATAATAATATAATAATATAAAGAGACCCGACTGAGAAATTAATAAAAACAAAATGGAGAATTAAACATGAACTTCCTGGGTCCTCCCTGTTAGTATGGACCATAACGACTGCCAACTTTCCATAGACGCCAAAGCTCCGAAATCGATAAATCTGAAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCGAGAATTCTGTTCTACA</pcr_primer_p1>
		<pcr_primer_p2>TTATCAGGGTCGTATTTCATAGA</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>GCCGAGAATTCTGTTCTACAGTATCCGTAGTTTTTATATGTTGAGTTACTCTGCAAAACCATTGTATTCTTCTCCTCAACTTCATCTCTTTGATCCTGTGACGTAATGTGTAAAATCTAAAACACAAAACTCCCACACACTGCACCCACTGGCTTACAATTCTTCACCTTAATTTCGTCCATTCATCTCAGTTTCCCATATCAGTTTGTCTATGAAATACGACCCTGATAA</canonical_amplicon>
		<polymorphic_amplicon>GCCGAGAATTCTGTTCTACAGTATCCGTAGTTTTTATATGTTGAGTTACTCTGCAAAACCATTGTATTCTTCTCYTCAACTTCATCTCTTTGATCCTGTGACGTAATGTGTAAAATCTAAAACACAAAACTCCCACACACTGCACCCACTGGCTTACAATTCTTCACCTTAATTTCGTCCATTCATCTCAGTTTCCCATATCAGTTTGTCTATGAAATACGACCCTGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28858</snp_id>
        <super_contig>c004001523.Contig1</super_contig>
        <contig_pos>661394</contig_pos>
        <strand>+</strand>
        <context>TCTAGAATTC[C/G]TAGTTTGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTTTCAAACGAATGAGTTTTTCTTTCAAATGAATGAATTCTAGAATTC</left_flank>
        <right_flank>TAGTTTGTTTACTGTAGACGGTTATGATTCAGATAAGTCTAGTAAAATTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCGAGACATATTAGCCCAAAATTACCTTTGATAAAAGACCGCCCTATGCTTCCACTTTGAGCTCAATTATCTCTGTTCCTATACGAAACATCAAAATTGTGTTATCTGATAAAATATGTAGTACAACACCACCAACATTTTATCTGTTGACACATTTTTGATATCTCTTATAGAAATTGAGATAATTGAGATCAAGTGAAAGTATAGGGTAACTTCCTATAGTGGGGGAGCCCTTTTATTAAAGGCTTTACTCTCAACTCACCGGCTTTTCAGCACAATACAAAATAGCATATGTGAATTCGAAAAGGTTAATGTAAATCATAAGATATTTATAGGATCCCAGAGACTTCGGAGATTTTGTGATAATCAAAAAAATCAGAAGAAAGTTGATAGAAACAGCACAGGCTGCTGAAATGTTAAGCCATAGAACATCGTCGATTGGCATTTTTTTTTCAAACGAATGAGTTTTTCTTTCAAATGAATGAATTCTAGAATTCCTAGTTTGTTTACTGTAGACGGTTATGATTCAGATAAGTCTAGTAAAATTGTAGTTGTTATGGAGGGAGGGTGATTCAAAGAAATCTCTGATTTGTGATGTTACTGATGCTCATTTTTGAGTAAAGAAAAAGTGGGTGGAGTGTGATACGTGACAGTTGTATAGTTTCAGTTTTCAACTTTTTTAATCCGAAGATGTCGTCTTCTAATCCAGAAATTCTAGAAAAAACTAACAGAGTAACATCATTTATAGAAAGTGCAAAAAATTTAATGTTTGACTTCTACCAATTTTTGTCAAAAAGAACTGGAAAAAAGTGCTGAAGCTCGCGAAAGTAAACGAAATTTTCACATTTTTGCTGAAAATTCTTTGTTTTTTTTGTATAAAACTTATAGGCTCAGGCAAAAACGCCTTGTTTCCCTTCCACTGGGAACCCAGCTTTTGGGAGAAAATTCCTATTTTTCGAGTATTGAAAACACTTCCCGGAGATTTTTCTTTTTTTTTA</canonical>
            <polymorphic>AACCGAGACATATTAGCCCAAAATTACCTTTGATAAAAGACCGCCCTATGCTTCCACTTTGAGCTCAATTATCTCTGTTCCTATACGAAACATCAAAATTGTGTTATCTGATAAAATATGTAGTACAACACCACCAACATTTTATCTGTTGACACATTTTTGATATCTCTTATAGAAATTGAGATAATTGAGATCAAGTGAAAGTATAGGGTAACTTCCTATAGTGGGGGAGCCCTTTTATTAAAGGCTTTACTCTCAACTCACCGGCTTTTCAGCACAATACAAAATAGCATATGTGAATTCGAAAAGGTTAATGTAAATCATAAGATATTTATAGGATCCCAGAGACTTCGGAGATTTTGTGATAATCAAAAAAATCAGAAGAAAGTTGATAGAAACAGCACAGGCTGCTGAAATGTTAAGCCATAGAACATCGTCGATTGGCATTTTTTTTTCAAACGAATGAGTTTTTCTTTCAAATGAATGAATTCTAGAATTCSTAGTTTGTTTACTGTAGACGGTTATGATTCAGATAAGTCTAGTAAAATTGTAGTTGTTATGGAGGGAGGGTGATTCAAAGAAATCTCTGATTTGTGATGTTACTGATGCTCATTTTTGAGTAAAGAAAAAGTGGGTGGAGTGTGATACGTGACAGTTGTATAGTTTCAGTTTTCAACTTTTTTAATCCGAAGATGTCGTCTTCTAATCCAGAAATTCTAGAAAAAACTAACAGAGTAACATCATTTATAGAAAGTGCAAAAAATTTAATGTTTGACTTCTACCAATTTTTGTCAAAAAGAACTGGAAAAAAGTGCTGAAGCTCGCGAAAGTAAACGAAATTTTCACATTTTTGCTGAAAATTCTTTGTTTTTTTTGTATAAAACTTATAGGCTCAGGCAAAAACGCCTTGTTTCCCTTCCACTGGGAACCCAGCTTTTGGGAGAAAATTCCTATTTTTCGAGTATTGAAAACACTTCCCGGAGATTTTTCTTTTTTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>491 283 178 39 9</canonical_bands>
                <polymorphic_bands>491 283 178 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAATGTTAAGCCATAGAACAT</pcr_primer_p1>
		<pcr_primer_p2>TACAACTGTCACGTATCACACTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAAATGTTAAGCCATAGAACATCGTCGATTGGCATTTTTTTTTCAAACGAATGAGTTTTTCTTTCAAATGAATGAATTCTAGAATTCCTAGTTTGTTTACTGTAGACGGTTATGATTCAGATAAGTCTAGTAAAATTGTAGTTGTTATGGAGGGAGGGTGATTCAAAGAAATCTCTGATTTGTGATGTTACTGATGCTCATTTTTGAGTAAAGAAAAAGTGGGTGGAGTGTGATACGTGACAGTTGTA</canonical_amplicon>
		<polymorphic_amplicon>TGAAATGTTAAGCCATAGAACATCGTCGATTGGCATTTTTTTTTCAAACGAATGAGTTTTTCTTTCAAATGAATGAATTCTAGAATTCSTAGTTTGTTTACTGTAGACGGTTATGATTCAGATAAGTCTAGTAAAATTGTAGTTGTTATGGAGGGAGGGTGATTCAAAGAAATCTCTGATTTGTGATGTTACTGATGCTCATTTTTGAGTAAAGAAAAAGTGGGTGGAGTGTGATACGTGACAGTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28859</snp_id>
        <super_contig>c004001729.Contig1</super_contig>
        <contig_pos>7369</contig_pos>
        <strand></strand>
        <context>ttcagaaatt[C/T]agaaattcag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATT</left_flank>
        <right_flank>AGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAG</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGCCACGTGCACACAAAACATCTCGAATCATCCGGTGGTCCAGGAATCAGCGATCCGAAAAATGAAAAAAGTGAAGACGTCGATTCAGAAGACGTCGACGTCGTCGACGTCGCTGATGGAGGTGGTGGCTGATACGACCATGGAGGACAGATTGGACAGGGAAGGGGCGGGGCCTTGCGGTGGAGCAATTTGGATTGGTGGACTGGAAATTTGAAAGTTAAGGTTTAGAATATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCCAAAAATTCTAAAAATTCTAAAAATTCTAAAATTCCAAAAATTCCAAACATCCCAAAATTCCAAAATTCCAAACATTCCAGAAATTCCAGAAATTCCAAATATTTCAAAATTTCGAAATTTCGAACATTCCTCAAAAATCCGGACTACTGTATAACCATACTCACGGAACTGGTTTCGGAATCGCGTCCAACTTCTTCTGAAACTCAATTTTCATCTTCTCAATTTCCATTTTCAGCTTCTCGTTCTCCAATTTTGCAGCCTCCTCAGCCTTCTCCAGCTGTCCACATTTTTTGTTCAGACTGAAAATTTAAATTAAAAAAAAAAACATTTGAAAATTGTCTGAAAATCCAGAATAATTTGGCTGAAATTCCAAAAAATGAAATTTTTTTTTCAAAAATTTCCAAATGTCCCTCACTTCTGAATCTGATTTTTCTG</canonical>
            <polymorphic>TCGCCACGTGCACACAAAACATCTCGAATCATCCGGTGGTCCAGGAATCAGCGATCCGAAAAATGAAAAAAGTGAAGACGTCGATTCAGAAGACGTCGACGTCGTCGACGTCGCTGATGGAGGTGGTGGCTGATACGACCATGGAGGACAGATTGGACAGGGAAGGGGCGGGGCCTTGCGGTGGAGCAATTTGGATTGGTGGACTGGAAATTTGAAAGTTAAGGTTTAGAATATTCAGAAATTYAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCCAAAAATTCTAAAAATTCTAAAAATTCTAAAATTCCAAAAATTCCAAACATCCCAAAATTCCAAAATTCCAAACATTCCAGAAATTCCAGAAATTCCAAATATTTCAAAATTTCGAAATTTCGAACATTCCTCAAAAATCCGGACTACTGTATAACCATACTCACGGAACTGGTTTCGGAATCGCGTCCAACTTCTTCTGAAACTCAATTTTCATCTTCTCAATTTCCATTTTCAGCTTCTCGTTCTCCAATTTTGCAGCCTCCTCAGCCTTCTCCAGCTGTCCACATTTTTTGTTCAGACTGAAAATTTAAATTAAAAAAAAAAACATTTGAAAATTGTCTGAAAATCCAGAATAATTTGGCTGAAATTCCAAAAAATGAAATTTTTTTTTCAAAAATTTCCAAATGTCCCTCACTTCTGAATCTGATTTTTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>208 189 61 40 31 18 17 17 15 15 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>208 189 61 40 39 18 17 17 15 15 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>185 149 99 78 57 44 31 21 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6</canonical_bands>
                <polymorphic_bands>185 149 99 78 57 44 31 21 16 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGGAAATTTGAAAGTTAAGGT</pcr_primer_p1>
		<pcr_primer_p2>TGAGTTTCAGAAGAAGTTGGAC</pcr_primer_p2>
		<pcr_amplicon_size>568</pcr_amplicon_size>
		<canonical_amplicon>CTGGAAATTTGAAAGTTAAGGTTTAGAATATTCAGAAATTYAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCCAAAAATTCTAAAAATTCTAAAAATTCTAAAATTCCAAAAATTCCAAACATCCCAAAATTCCAAAATTCCAAACATTCCAGAAATTCCAGAAATTCCAAATATTTCAAAATTTCGAAATTTCGAACATTCCTCAAAAATCCGGACTACTGTATAACCATACTCACGGAACTGGTTTCGGAATCGCGTCCAACTTCTTCTGAAACTCA</canonical_amplicon>
		<polymorphic_amplicon>CTGGAAATTTGAAAGTTAAGGTTTAGAATATTCAGAAATTYAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCCAAAAATTCTAAAAATTCTAAAAATTCTAAAATTCCAAAAATTCCAAACATCCCAAAATTCCAAAATTCCAAACATTCCAGAAATTCCAGAAATTCCAAATATTTCAAAATTTCGAAATTTCGAACATTCCTCAAAAATCCGGACTACTGTATAACCATACTCACGGAACTGGTTTCGGAATCGCGTCCAACTTCTTCTGAAACTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28860</snp_id>
        <super_contig>c004001729.Contig1</super_contig>
        <contig_pos>7568</contig_pos>
        <strand>+</strand>
        <context>acattccTCA[A/G]AAATCCGGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCAGAAATTCCAAATATTTCAAAATTTCGAAATTTCGAACATTCCTCA</left_flank>
        <right_flank>AAATCCGGACTACTGTATAACCATACTCACGGAACTGGTTTCGGAATCGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGACTGGAAATTTGAAAGTTAAGGTTTAGAATATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCCAAAAATTCTAAAAATTCTAAAAATTCTAAAATTCCAAAAATTCCAAACATCCCAAAATTCCAAAATTCCAAACATTCCAGAAATTCCAGAAATTCCAAATATTTCAAAATTTCGAAATTTCGAACATTCCTCAAAAATCCGGACTACTGTATAACCATACTCACGGAACTGGTTTCGGAATCGCGTCCAACTTCTTCTGAAACTCAATTTTCATCTTCTCAATTTCCATTTTCAGCTTCTCGTTCTCCAATTTTGCAGCCTCCTCAGCCTTCTCCAGCTGTCCACATTTTTTGTTCAGACTGAAAATTTAAATTAAAAAAAAAAACATTTGAAAATTGTCTGAAAATCCAGAATAATTTGGCTGAAATTCCAAAAAATGAAATTTTTTTTTCAAAAATTTCCAAATGTCCCTCACTTCTGAATCTGATTTTTCTGATTCTGAATCGTCTTGTTTTCCGCGTCCTTGGCATTTTTCAGCTTTTGCTCCAATTGGGCCACATTGTCCGTCAGGCTGAAATTTTTAGAAAAAATTTGTTTTCAAAATTATTTTTAAAACGCCTACATCTTGTTCTGAGAACCCAATTTCGATGCTGCAGCATTTTTCCGCTGATTTTCAGTTCTCGATTGTTTCAGC</canonical>
            <polymorphic>TGGACTGGAAATTTGAAAGTTAAGGTTTAGAATATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCCAAAAATTCTAAAAATTCTAAAAATTCTAAAATTCCAAAAATTCCAAACATCCCAAAATTCCAAAATTCCAAACATTCCAGAAATTCCAGAAATTCCAAATATTTCAAAATTTCGAAATTTCGAACATTCCTCARAAATCCGGACTACTGTATAACCATACTCACGGAACTGGTTTCGGAATCGCGTCCAACTTCTTCTGAAACTCAATTTTCATCTTCTCAATTTCCATTTTCAGCTTCTCGTTCTCCAATTTTGCAGCCTCCTCAGCCTTCTCCAGCTGTCCACATTTTTTGTTCAGACTGAAAATTTAAATTAAAAAAAAAAACATTTGAAAATTGTCTGAAAATCCAGAATAATTTGGCTGAAATTCCAAAAAATGAAATTTTTTTTTCAAAAATTTCCAAATGTCCCTCACTTCTGAATCTGATTTTTCTGATTCTGAATCGTCTTGTTTTCCGCGTCCTTGGCATTTTTCAGCTTTTGCTCCAATTGGGCCACATTGTCCGTCAGGCTGAAATTTTTAGAAAAAATTTGTTTTCAAAATTATTTTTAAAACGCCTACATCTTGTTCTGAGAACCCAATTTCGATGCTGCAGCATTTTTCCGCTGATTTTCAGTTCTCGATTGTTTCAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGGAAATTTGAAAGTTAAGGT</pcr_primer_p1>
		<pcr_primer_p2>TGAGTTTCAGAAGAAGTTGGAC</pcr_primer_p2>
		<pcr_amplicon_size>568</pcr_amplicon_size>
		<canonical_amplicon>CTGGAAATTTGAAAGTTAAGGTTTAGAATATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCCAAAAATTCTAAAAATTCTAAAAATTCTAAAATTCCAAAAATTCCAAACATCCCAAAATTCCAAAATTCCAAACATTCCAGAAATTCCAGAAATTCCAAATATTTCAAAATTTCGAAATTTCGAACATTCCTCAAAAATCCGGACTACTGTATAACCATACTCACGGAACTGGTTTCGGAATCGCGTCCAACTTCTTCTGAAACTCA</canonical_amplicon>
		<polymorphic_amplicon>CTGGAAATTTGAAAGTTAAGGTTTAGAATATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCCAAAAATTCTAAAAATTCTAAAAATTCTAAAATTCCAAAAATTCCAAACATCCCAAAATTCCAAAATTCCAAACATTCCAGAAATTCCAGAAATTCCAAATATTTCAAAATTTCGAAATTTCGAACATTCCTCARAAATCCGGACTACTGTATAACCATACTCACGGAACTGGTTTCGGAATCGCGTCCAACTTCTTCTGAAACTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28861</snp_id>
        <super_contig>c004001729.Contig1</super_contig>
        <contig_pos>7597</contig_pos>
        <strand>+</strand>
        <context>AACCATACTC[A/G]CGGAACTGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAAATTTCGAACATTCCTCAAAAATCCGGACTACTGTATAACCATACTC</left_flank>
        <right_flank>CGGAACTGGTTTCGGAATCGCGTCCAACTTCTTCTGAAACTCAATTTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCCAAAAATTCTAAAAATTCTAAAAATTCTAAAATTCCAAAAATTCCAAACATCCCAAAATTCCAAAATTCCAAACATTCCAGAAATTCCAGAAATTCCAAATATTTCAAAATTTCGAAATTTCGAACATTCCTCAAAAATCCGGACTACTGTATAACCATACTCACGGAACTGGTTTCGGAATCGCGTCCAACTTCTTCTGAAACTCAATTTTCATCTTCTCAATTTCCATTTTCAGCTTCTCGTTCTCCAATTTTGCAGCCTCCTCAGCCTTCTCCAGCTGTCCACATTTTTTGTTCAGACTGAAAATTTAAATTAAAAAAAAAAACATTTGAAAATTGTCTGAAAATCCAGAATAATTTGGCTGAAATTCCAAAAAATGAAATTTTTTTTTCAAAAATTTCCAAATGTCCCTCACTTCTGAATCTGATTTTTCTGATTCTGAATCGTCTTGTTTTCCGCGTCCTTGGCATTTTTCAGCTTTTGCTCCAATTGGGCCACATTGTCCGTCAGGCTGAAATTTTTAGAAAAAATTTGTTTTCAAAATTATTTTTAAAACGCCTACATCTTGTTCTGAGAACCCAATTTCGATGCTGCAGCATTTTTCCGCTGATTTTCAGTTCTCGATTGTTTCAGCGAATTCTGAACTTTTGATTTTTCCTCTTC</canonical>
            <polymorphic>GAATATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCCAAAAATTCTAAAAATTCTAAAAATTCTAAAATTCCAAAAATTCCAAACATCCCAAAATTCCAAAATTCCAAACATTCCAGAAATTCCAGAAATTCCAAATATTTCAAAATTTCGAAATTTCGAACATTCCTCAAAAATCCGGACTACTGTATAACCATACTCRCGGAACTGGTTTCGGAATCGCGTCCAACTTCTTCTGAAACTCAATTTTCATCTTCTCAATTTCCATTTTCAGCTTCTCGTTCTCCAATTTTGCAGCCTCCTCAGCCTTCTCCAGCTGTCCACATTTTTTGTTCAGACTGAAAATTTAAATTAAAAAAAAAAACATTTGAAAATTGTCTGAAAATCCAGAATAATTTGGCTGAAATTCCAAAAAATGAAATTTTTTTTTCAAAAATTTCCAAATGTCCCTCACTTCTGAATCTGATTTTTCTGATTCTGAATCGTCTTGTTTTCCGCGTCCTTGGCATTTTTCAGCTTTTGCTCCAATTGGGCCACATTGTCCGTCAGGCTGAAATTTTTAGAAAAAATTTGTTTTCAAAATTATTTTTAAAACGCCTACATCTTGTTCTGAGAACCCAATTTCGATGCTGCAGCATTTTTCCGCTGATTTTCAGTTCTCGATTGTTTCAGCGAATTCTGAACTTTTGATTTTTCCTCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>500 166 130 121 83</canonical_bands>
                <polymorphic_bands>621 166 130 83</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGGAAATTTGAAAGTTAAGGT</pcr_primer_p1>
		<pcr_primer_p2>GAAATTGAGAAGATGAAAATTGA</pcr_primer_p2>
		<pcr_amplicon_size>588</pcr_amplicon_size>
		<canonical_amplicon>CACGGAACTGGTTTCGGAATCGCGTCCAACTTCTTCTGAAACTCAATTTTCATCTTCTCAATTTC</canonical_amplicon>
		<polymorphic_amplicon>CRCGGAACTGGTTTCGGAATCGCGTCCAACTTCTTCTGAAACTCAATTTTCATCTTCTCAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28862</snp_id>
        <super_contig>c004001729.Contig1</super_contig>
        <contig_pos>8483</contig_pos>
        <strand></strand>
        <context>catttttttg[T/G]ttttctaggc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TGATATAGAATTTAAAAACTTTTAGTTGGCCTAGGTTTCTCATTTTTTTG</left_flank>
        <right_flank>TTTTCTAGGCCAGCAACTTAAAATCGTCATAACTTTGGTTGAAATAGGCA</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAACGCCTACATCTTGTTCTGAGAACCCAATTTCGATGCTGCAGCATTTTTCCGCTGATTTTCAGTTCTCGATTGTTTCAGCGAATTCTGAACTTTTGATTTTTCCTCTTCCAGCGATTTCAGATTCTTGTTTAGCGTCGTCAGAGCATCCGAATGCGATTGGGCAACTTGTTGGGCTGTTTTGGCGGCATTTCTGAATAGAAAGGATTACTGTAGAATTGCTGATCTCAAAACTTTTCAAAAAATTTCGAAAATTTCAATTTTGAAGCGACTTACAGCCATTTGTAGCCTGTGGATAAGAAAACCGAAAAACGAGAAACCTAGGCCATCTCAAATTTTTAAAATTTTATATCAATCGATTTCGCTTCAATTGCTCATTTCAAAACTTTTCGAAGTTTTGAAAAACCCCAAAAAGTTTTAAAGTGAGCAATTAAAGCGAAATCGATTGATATAGAATTTAAAAACTTTTAGTTGGCCTAGGTTTCTCATTTTTTTGTTTTTCTAGGCCAGCAACTTAAAATCGTCATAACTTTGGTTGAAATAGGCATTTTTTGAAGCAGAAAACTGGAAAAGAATTCTGAAATTTTTGAGAGTCAGAAAATACAGTTTTCAAATCAAAATCAAAGAAAAATCCTGTAAATCCAAAAAAAATGAAAATTCAAATTTTCAAAAACTTCTAAAATTATAAAATTTCAACCATTTTCAACCAAAACTGATTTCCGAAATCTCAAGATAGTCAAATTCAAACCTTTCTAGACTAAAATTTCCTGTCGATTCCAAAAATTTATGTTTCAAATTTTACAAATTTCTAGTTTTTGAGTTATGCGCCTTTAAAGATGGCGCGCTCCAGAGTTGCCTCTCCCCCTTTATTTTGAGCGCCCTAACTTTAAAAGCGCATATCTCGAAAACTAGAAAAGTTATCAAAAAGTGGCCAACTACAAAAATGTGGAAATTTTTAACTTGAGCAATTTCGTAGTTTGTAGTTTTTGTGTACATG</canonical>
            <polymorphic>TTAAAACGCCTACATCTTGTTCTGAGAACCCAATTTCGATGCTGCAGCATTTTTCCGCTGATTTTCAGTTCTCGATTGTTTCAGCGAATTCTGAACTTTTGATTTTTCCTCTTCCAGCGATTTCAGATTCTTGTTTAGCGTCGTCAGAGCATCCGAATGCGATTGGGCAACTTGTTGGGCTGTTTTGGCGGCATTTCTGAATAGAAAGGATTACTGTAGAATTGCTGATCTCAAAACTTTTCAAAAAATTTCGAAAATTTCAATTTTGAAGCGACTTACAGCCATTTGTAGCCTGTGGATAAGAAAACCGAAAAACGAGAAACCTAGGCCATCTCAAATTTTTAAAATTTTATATCAATCGATTTCGCTTCAATTGCTCATTTCAAAACTTTTCGAAGTTTTGAAAAACCCCAAAAAGTTTTAAAGTGAGCAATTAAAGCGAAATCGATTGATATAGAATTTAAAAACTTTTAGTTGGCCTAGGTTTCTCATTTTTTTGKTTTTCTAGGCCAGCAACTTAAAATCGTCATAACTTTGGTTGAAATAGGCATTTTTTGAAGCAGAAAACTGGAAAAGAATTCTGAAATTTTTGAGAGTCAGAAAATACAGTTTTCAAATCAAAATCAAAGAAAAATCCTGTAAATCCAAAAAAAATGAAAATTCAAATTTTCAAAAACTTCTAAAATTATAAAATTTCAACCATTTTCAACCAAAACTGATTTCCGAAATCTCAAGATAGTCAAATTCAAACCTTTCTAGACTAAAATTTCCTGTCGATTCCAAAAATTTATGTTTCAAATTTTACAAATTTCTAGTTTTTGAGTTATGCGCCTTTAAAGATGGCGCGCTCCAGAGTTGCCTCTCCCCCTTTATTTTGAGCGCCCTAACTTTAAAAGCGCATATCTCGAAAACTAGAAAAGTTATCAAAAAGTGGCCAACTACAAAAATGTGGAAATTTTTAACTTGAGCAATTTCGTAGTTTGTAGTTTTTGTGTACATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAATTGCTCATTTCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAAACTGTATTTTCTGACTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCAATTGCTCATTTCAAAACTTTTCGAAGTTTTGAAAAACCCCAAAAAGTTTTAAAGTGAGCAATTAAAGCGAAATCGATTGATATAGAATTTAAAAACTTTTAGTTGGCCTAGGTTTCTCATTTTTTTGTTTTTCTAGGCCAGCAACTTAAAATCGTCATAACTTTGGTTGAAATAGGCATTTTTTGAAGCAGAAAACTGGAAAAGAATTCTGAAATTTTTGAGAGTCAGAAAATACAGTTTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>TTCAATTGCTCATTTCAAAACTTTTCGAAGTTTTGAAAAACCCCAAAAAGTTTTAAAGTGAGCAATTAAAGCGAAATCGATTGATATAGAATTTAAAAACTTTTAGTTGGCCTAGGTTTCTCATTTTTTTGKTTTTCTAGGCCAGCAACTTAAAATCGTCATAACTTTGGTTGAAATAGGCATTTTTTGAAGCAGAAAACTGGAAAAGAATTCTGAAATTTTTGAGAGTCAGAAAATACAGTTTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28863</snp_id>
        <super_contig>c004001729.Contig1</super_contig>
        <contig_pos>8946</contig_pos>
        <strand></strand>
        <context>aaatttttaa[C/G]ttgagcaatt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAGAAAAGTTATCAAAAAGTGGCCAACTACAAAAATGTGGAAATTTTTAA</left_flank>
        <right_flank>TTGAGCAATTTCGTAGTTTGTAGTTTTTGTGTACATGTTTTGGTTTTCGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACTTTTAGTTGGCCTAGGTTTCTCATTTTTTTGTTTTTCTAGGCCAGCAACTTAAAATCGTCATAACTTTGGTTGAAATAGGCATTTTTTGAAGCAGAAAACTGGAAAAGAATTCTGAAATTTTTGAGAGTCAGAAAATACAGTTTTCAAATCAAAATCAAAGAAAAATCCTGTAAATCCAAAAAAAATGAAAATTCAAATTTTCAAAAACTTCTAAAATTATAAAATTTCAACCATTTTCAACCAAAACTGATTTCCGAAATCTCAAGATAGTCAAATTCAAACCTTTCTAGACTAAAATTTCCTGTCGATTCCAAAAATTTATGTTTCAAATTTTACAAATTTCTAGTTTTTGAGTTATGCGCCTTTAAAGATGGCGCGCTCCAGAGTTGCCTCTCCCCCTTTATTTTGAGCGCCCTAACTTTAAAAGCGCATATCTCGAAAACTAGAAAAGTTATCAAAAAGTGGCCAACTACAAAAATGTGGAAATTTTTAACTTGAGCAATTTCGTAGTTTGTAGTTTTTGTGTACATGTTTTGGTTTTCGAGTTATGCGCCTTTAAAGATGGCGCGCTCCAGAGTTGCCCCTCCCGCTTTATTTTGTGCGCCTTAAATTTAAAGGCGCATATCTCGAAAACTAGAAGAGGTAGCAAAACGTTGTAAACTACAAAAATGTGTAAAATATTATGTTGAGCAATTTTGTTGTTTGTAGTTTTTTGATAGCAGCTATGGTTTTTGAGATATGCGCCTTTAAATAAACAAGAAGTCAAGGAGATCCTCTTAAGGGTGCGCTAACTTTAAAGGCGCATGACTCAACAATTTTTAAGGCTGTAAAAAATTTAAAATACGATTCTACACCAAAATTCTCTGTTAATTCCAGAATTCTAAAATAATGTCTCCTTTCTGAGTTATGCGCCTTTGAACATTCCCTCAGGTAAGGGGAACTCACCTCTTCGTTTCCTCCAACTGCTTCTCCTTCTTCCTCAAGCTCTTCTCCA</canonical>
            <polymorphic>AAAACTTTTAGTTGGCCTAGGTTTCTCATTTTTTTGTTTTTCTAGGCCAGCAACTTAAAATCGTCATAACTTTGGTTGAAATAGGCATTTTTTGAAGCAGAAAACTGGAAAAGAATTCTGAAATTTTTGAGAGTCAGAAAATACAGTTTTCAAATCAAAATCAAAGAAAAATCCTGTAAATCCAAAAAAAATGAAAATTCAAATTTTCAAAAACTTCTAAAATTATAAAATTTCAACCATTTTCAACCAAAACTGATTTCCGAAATCTCAAGATAGTCAAATTCAAACCTTTCTAGACTAAAATTTCCTGTCGATTCCAAAAATTTATGTTTCAAATTTTACAAATTTCTAGTTTTTGAGTTATGCGCCTTTAAAGATGGCGCGCTCCAGAGTTGCCTCTCCCCCTTTATTTTGAGCGCCCTAACTTTAAAAGCGCATATCTCGAAAACTAGAAAAGTTATCAAAAAGTGGCCAACTACAAAAATGTGGAAATTTTTAASTTGAGCAATTTCGTAGTTTGTAGTTTTTGTGTACATGTTTTGGTTTTCGAGTTATGCGCCTTTAAAGATGGCGCGCTCCAGAGTTGCCCCTCCCGCTTTATTTTGTGCGCCTTAAATTTAAAGGCGCATATCTCGAAAACTAGAAGAGGTAGCAAAACGTTGTAAACTACAAAAATGTGTAAAATATTATGTTGAGCAATTTTGTTGTTTGTAGTTTTTTGATAGCAGCTATGGTTTTTGAGATATGCGCCTTTAAATAAACAAGAAGTCAAGGAGATCCTCTTAAGGGTGCGCTAACTTTAAAGGCGCATGACTCAACAATTTTTAAGGCTGTAAAAAATTTAAAATACGATTCTACACCAAAATTCTCTGTTAATTCCAGAATTCTAAAATAATGTCTCCTTTCTGAGTTATGCGCCTTTGAACATTCCCTCAGGTAAGGGGAACTCACCTCTTCGTTTCCTCCAACTGCTTCTCCTTCTTCCTCAAGCTCTTCTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>282 267 233 203 15</canonical_bands>
                <polymorphic_bands>515 267 203 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACTAAAATTTCCTGTCGATTC</pcr_primer_p1>
		<pcr_primer_p2>GAATATTCAAATACAGGAGGATCT</pcr_primer_p2>
		<pcr_amplicon_size>762</pcr_amplicon_size>
		<canonical_amplicon>AGACTAAAATTTCCTGTCGATTCCAAAAATTTATGTTTCAAATTTTACAAATTTCTAGTTTTTGAGTTATGCGCCTTTAAAGATGGCGCGCTCCAGAGTTGCCTCTCCCCCTTTATTTTGAGCGCCCTAACTTTAAAAGCGCATATCTCGAAAACTAGAAAAGTTATCAAAAAGTGGCCAACTACAAAAATGTGGAAATTTTTAACTTGAGCAATTTCGTAGTTTGTAG</canonical_amplicon>
		<polymorphic_amplicon>AGACTAAAATTTCCTGTCGATTCCAAAAATTTATGTTTCAAATTTTACAAATTTCTAGTTTTTGAGTTATGCGCCTTTAAAGATGGCGCGCTCCAGAGTTGCCTCTCCCCCTTTATTTTGAGCGCCCTAACTTTAAAAGCGCATATCTCGAAAACTAGAAAAGTTATCAAAAAGTGGCCAACTACAAAAATGTGGAAATTTTTAASTTGAGCAATTTCGTAGTTTGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28864</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>39975</contig_pos>
        <strand>+</strand>
        <context>GGGATTTTYG[C/T]AGAATTTATT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTTATAGGTTTTCTGGAAGAAAATCTATAAAATTTTATGGGATTTTTG</left_flank>
        <right_flank>AGAATTTATTGGGTTCGAAACGATTTTAAAAAAAGTTTTTTTTTATCGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTGGTTTTCAAACAAAAAGAGTCTCTTTTTTCTGGTTTAAAAATCCCCAAATTTGGATTACCTAGACCCGAAAAAGTGGGCGGAGCCTCGTCTTACCTGTCCATCATTAGTCTCCAAATACAACACATTTCGCGAAGGTTTTTGACTGGAAAATTCACAAGACATCTCAATAAAACATCCCAAACGCTTTTCAAATTTCACATTTTTCTCCAAAAAATTTCTCCCGAAATTATGGGAAATATCCGATTGCTTTCTGGATAAAATATCTCCGGCCGGTATTGGATCAAACGAAGAGCATTGACAATTATCTTTATTCAATAATTTATTAGGGAAATTCAACCAAAATTCCAACCTTGAAGTCCAAAAACTGAAACAGTTAGAAAAGGCAAAAATATAAGGAAAAGTTGCATTTTTGAGAAAACTGAAAGTTTAAAGTTTGGTGACAGTTTTATAGGTTTTCTGGAAGAAAATCTATAAAATTTTATGGGATTTTTGGAGAATTTATTGGGTTCGAAACGATTTTAAAAAAAGTTTTTTTTTATCGTTAGAGATGGGAAAAAACTTGCGAAACCTTTTGCGAAACGAAACCCAGCTTTACCATACGAGCCGGCTTCAGGTCCATTAACATGTCGCGGGCCGGGCTAGAATGACGAAAAACCCGATTTCGGCCAAATTTGCCATTCTTGCCCGGCCCGTATGGTAAAGATAAGATGATGGACTTCGTCGAGATCTATCATTTGATATCAAATCCGTCGAAATATCTTGTTCTGAAGCCGAGTTATCTGCCGGCCCGCCATTTGCCCGGGCCGGCCCGTTTGCAACTATGTAAAAAAATTAGTTTCTTGGAAATGCAGAAACTCGGAATTTCAGAGAAATTGGGAACCAAACTACCGTAAAAACTTAAATAGAATCCCCGAATCGTCACATTTGAGCCCATGTGTCTCATTTTCTGTGAGAGATATCAAAACATGGTCAGCTGATAAAATGTTGCTGATA</canonical>
            <polymorphic>AAATTTGGTTTTCAAACAAAAAGAGTCTCTTTTTTCTGGTTTAAAAATCCCCAAATTTGGATTACCTAGACCCGAAAAAGTGGGCGGAGCCTCGTCTTACCTGTCCATCATTAGTCTCCAAATACAACACATTTCGCGAAGGTTTTTGACTGGAAAATTCACAAGACATCTCAATAAAACATCCCAAACGCTTTTCAAATTTCACATTTTTCTCCAAAAAATTTCTCCCGAAATTATGGGAAATATCCGATTGCTTTCTGGATAAAATATCTCCGGCCGGTATTGGATCAAACGAAGAGCATTGACAATTATCTTTATTCAATAATTTATTAGGGAAATTCAACCAAAATTCCAACCTTGAAGTCCAAAAACTGAAACAGTTAGAAAAGGCAAAAATATAAGGAAAAGTTGCATTTTTGAGAAAACTGAAAGTTTAAAGTTTGGTGACAGTTTTATAGGTTTTCTGGAAGAAAATCTATAAAATTTTATGGGATTTTTGYAGAATTTATTGGGTTCGAAACGATTTTAAAAAAAGTTTTTTTTTATCGTTAGAGATGGGAAAAAACTTGCGAAACCTTTTGCGAAACGAAACCCAGCTTTACCATACGAGCCGGCTTCAGGTCCATTAACATGTCGCGGGCCGGGCTAGAATGACGAAAAACCCGATTTCGGCCAAATTTGCCATTCTTGCCCGGCCCGTATGGTAAAGATAAGATGATGGACTTCGTCGAGATCTATCATTTGATATCAAATCCGTCGAAATATCTTGTTCTGAAGCCGAGTTATCTGCCGGCCCGCCATTTGCCCGGGCCGGCCCGTTTGCAACTATGTAAAAAAATTAGTTTCTTGGAAATGCAGAAACTCGGAATTTCAGAGAAATTGGGAACCAAACTACCGTAAAAACTTAAATAGAATCCCCGAATCGTCACATTTGAGCCCATGTGTCTCATTTTCTGTGAGAGATATCAAAACATGGTCAGCTGATAAAATGTTGCTGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTAGGGAAATTCAACCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCCCATCTCTAACGATAA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>TATTAGGGAAATTCAACCAAAATTCCAACCTTGAAGTCCAAAAACTGAAACAGTTAGAAAAGGCAAAAATATAAGGAAAAGTTGCATTTTTGAGAAAACTGAAAGTTTAAAGTTTGGTGACAGTTTTATAGGTTTTCTGGAAGAAAATCTATAAAATTTTATGGGATTTTTGGAGAATTTATTGGGTTCGAAACGATTTTAAAAAAAGTTTTTTTTTATCGTTAGAGATGGGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TATTAGGGAAATTCAACCAAAATTCCAACCTTGAAGTCCAAAAACTGAAACAGTTAGAAAAGGCAAAAATATAAGGAAAAGTTGCATTTTTGAGAAAACTGAAAGTTTAAAGTTTGGTGACAGTTTTATAGGTTTTCTGGAAGAAAATCTATAAAATTTTATGGGATTTTTGYAGAATTTATTGGGTTCGAAACGATTTTAAAAAAAGTTTTTTTTTATCGTTAGAGATGGGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28865</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>40002</contig_pos>
        <strand>+</strand>
        <context>GAAACGATTT[A/T]AAAAAAAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATAAAATTTTATGGGATTTTTGGAGAATTTATTGGGTTCGAAACGATTT</left_flank>
        <right_flank>AAAAAAAGTTTTTTTTTATCGTTAGAGATGGGAAAAAACTTGCGAAACCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTTTTTCTGGTTTAAAAATCCCCAAATTTGGATTACCTAGACCCGAAAAAGTGGGCGGAGCCTCGTCTTACCTGTCCATCATTAGTCTCCAAATACAACACATTTCGCGAAGGTTTTTGACTGGAAAATTCACAAGACATCTCAATAAAACATCCCAAACGCTTTTCAAATTTCACATTTTTCTCCAAAAAATTTCTCCCGAAATTATGGGAAATATCCGATTGCTTTCTGGATAAAATATCTCCGGCCGGTATTGGATCAAACGAAGAGCATTGACAATTATCTTTATTCAATAATTTATTAGGGAAATTCAACCAAAATTCCAACCTTGAAGTCCAAAAACTGAAACAGTTAGAAAAGGCAAAAATATAAGGAAAAGTTGCATTTTTGAGAAAACTGAAAGTTTAAAGTTTGGTGACAGTTTTATAGGTTTTCTGGAAGAAAATCTATAAAATTTTATGGGATTTTTGGAGAATTTATTGGGTTCGAAACGATTTTAAAAAAAGTTTTTTTTTATCGTTAGAGATGGGAAAAAACTTGCGAAACCTTTTGCGAAACGAAACCCAGCTTTACCATACGAGCCGGCTTCAGGTCCATTAACATGTCGCGGGCCGGGCTAGAATGACGAAAAACCCGATTTCGGCCAAATTTGCCATTCTTGCCCGGCCCGTATGGTAAAGATAAGATGATGGACTTCGTCGAGATCTATCATTTGATATCAAATCCGTCGAAATATCTTGTTCTGAAGCCGAGTTATCTGCCGGCCCGCCATTTGCCCGGGCCGGCCCGTTTGCAACTATGTAAAAAAATTAGTTTCTTGGAAATGCAGAAACTCGGAATTTCAGAGAAATTGGGAACCAAACTACCGTAAAAACTTAAATAGAATCCCCGAATCGTCACATTTGAGCCCATGTGTCTCATTTTCTGTGAGAGATATCAAAACATGGTCAGCTGATAAAATGTTGCTGATATCACGATACACATTTTATCAGTTGACA</canonical>
            <polymorphic>TCTTTTTTCTGGTTTAAAAATCCCCAAATTTGGATTACCTAGACCCGAAAAAGTGGGCGGAGCCTCGTCTTACCTGTCCATCATTAGTCTCCAAATACAACACATTTCGCGAAGGTTTTTGACTGGAAAATTCACAAGACATCTCAATAAAACATCCCAAACGCTTTTCAAATTTCACATTTTTCTCCAAAAAATTTCTCCCGAAATTATGGGAAATATCCGATTGCTTTCTGGATAAAATATCTCCGGCCGGTATTGGATCAAACGAAGAGCATTGACAATTATCTTTATTCAATAATTTATTAGGGAAATTCAACCAAAATTCCAACCTTGAAGTCCAAAAACTGAAACAGTTAGAAAAGGCAAAAATATAAGGAAAAGTTGCATTTTTGAGAAAACTGAAAGTTTAAAGTTTGGTGACAGTTTTATAGGTTTTCTGGAAGAAAATCTATAAAATTTTATGGGATTTTTGGAGAATTTATTGGGTTCGAAACGATTTWAAAAAAAGTTTTTTTTTATCGTTAGAGATGGGAAAAAACTTGCGAAACCTTTTGCGAAACGAAACCCAGCTTTACCATACGAGCCGGCTTCAGGTCCATTAACATGTCGCGGGCCGGGCTAGAATGACGAAAAACCCGATTTCGGCCAAATTTGCCATTCTTGCCCGGCCCGTATGGTAAAGATAAGATGATGGACTTCGTCGAGATCTATCATTTGATATCAAATCCGTCGAAATATCTTGTTCTGAAGCCGAGTTATCTGCCGGCCCGCCATTTGCCCGGGCCGGCCCGTTTGCAACTATGTAAAAAAATTAGTTTCTTGGAAATGCAGAAACTCGGAATTTCAGAGAAATTGGGAACCAAACTACCGTAAAAACTTAAATAGAATCCCCGAATCGTCACATTTGAGCCCATGTGTCTCATTTTCTGTGAGAGATATCAAAACATGGTCAGCTGATAAAATGTTGCTGATATCACGATACACATTTTATCAGTTGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 393 92 15</canonical_bands>
                <polymorphic_bands>592 393 15</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>393 279 122 100 92 14</canonical_bands>
                <polymorphic_bands>393 279 192 122 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATATAAGGAAAAGTTGCATTT</pcr_primer_p1>
		<pcr_primer_p2>GACATGTTAATGGACCTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAAATATAAGGAAAAGTTGCATTTTTGAGAAAACTGAAAGTTTAAAGTTTGGTGACAGTTTTATAGGTTTTCTGGAAGAAAATCTATAAAATTTTATGGGATTTTTGGAGAATTTATTGGGTTCGAAACGATTTTAAAAAAAGTTTTTTTTTATCGTTAGAGATGGGAAAAAACTTGCGAAACCTTTTGCGAAACGAAACCCAGCTTTACCATACGAGCCGGCTTCAGGTCCATTAACATGTC</canonical_amplicon>
		<polymorphic_amplicon>AAAATATAAGGAAAAGTTGCATTTTTGAGAAAACTGAAAGTTTAAAGTTTGGTGACAGTTTTATAGGTTTTCTGGAAGAAAATCTATAAAATTTTATGGGATTTTTGGAGAATTTATTGGGTTCGAAACGATTTWAAAAAAAGTTTTTTTTTATCGTTAGAGATGGGAAAAAACTTGCGAAACCTTTTGCGAAACGAAACCCAGCTTTACCATACGAGCCGGCTTCAGGTCCATTAACATGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28866</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>42345</contig_pos>
        <strand>+</strand>
        <context>CGCGCACAAT[G/T]ACAGWGGAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCTAGATTCAAAATCAGGCGCGTTAACTAGTCGGCCACGCGCGCACAAT</left_flank>
        <right_flank>ACAGAGGAGGGGTGGATGGCGTATAAGAAGGGGCGCGGAAAAGGGGAGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTATGCAAACGAACGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCTTCACAAGTTCAACTCCTCGAGAGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATTTCCACCCACCTTTAAAAAAGTTTTTGAAACTGCAATTTTTTTTCTTTTTTTTCGGGGATTTTTGGACCTGATTTGGTCAATAAAACCTTTGAGAAACCGTTTTTTGCCAGAATTTTTTAAAAATTATAACTTATTGAAATCGCTATTTAAGTAATTTTTACGCTATGATACACCGCAAAGCCGGCAAGCTTCACGTAGTTCAGCTGGAAAAAAGCAAAAGGTGTCATGAAATGATTTCTAGACCTTGTAGCAAAAAAGCAAAAAGGATCAAAAAGACTTACGCACCAGTGGGAGTCGAACCCGTGACCTCTAGATTCAAAATCAGGCGCGTTAACTAGTCGGCCACGCGCGCACAATTACAGAGGAGGGGTGGATGGCGTATAAGAAGGGGCGCGGAAAAGGGGAGCGGAGGGGAGCAGGAGGGTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGAT</canonical>
            <polymorphic>TGTATGCAAACGAACGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCTTCACAAGTTCAACTCCTCGAGAGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATTTCCACCCACCTTTAAAAAAGTTTTTGAAACTGCAATTTTTTTTCTTTTTTTTCGGGGATTTTTGGACCTGATTTGGTCAATAAAACCTTTGAGAAACCGTTTTTTGCCAGAATTTTTTAAAAATTATAACTTATTGAAATCGCTATTTAAGTAATTTTTACGCTATGATACACCGCAAAGCCGGCAAGCTTCACGTAGTTCAGCTGGAAAAAAGCAAAAGGTGTCATGAAATGATTTCTAGACCTTGTAGCAAAAAAGCAAAAAGGATCAAAAAGACTTACGCACCAGTGGGAGTCGAACCCGTGACCTCTAGATTCAAAATCAGGCGCGTTAACTAGTCGGCCACGCGCGCACAATKACAGAGGAGGGGTGGATGGCGTATAAGAAGGGGCGCGGAAAAGGGGAGCGGAGGGGAGCAGGAGGGTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>202 156 155 115 77 60 50 48 31 31 30 15 11 11 8</canonical_bands>
                <polymorphic_bands>357 156 115 77 60 50 48 31 31 30 15 11 11 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGGTGTCATGAAATGAT</pcr_primer_p1>
		<pcr_primer_p2>TATCCCCTAATCTCGCCTAC</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGGTGTCATGAAATGATTTCTAGACCTTGTAGCAAAAAAGCAAAAAGGATCAAAAAGACTTACGCACCAGTGGGAGTCGAACCCGTGACCTCTAGATTCAAAATCAGGCGCGTTAACTAGTCGGCCACGCGCGCACAATTACAGAGGAGGGGTGGATGGCGTATAAGAAGGGGCGCGGAAAAGGGGAGCGGAGGGGAGCAGGAGGGTAGGCGAGATTAGGGGATA</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGGTGTCATGAAATGATTTCTAGACCTTGTAGCAAAAAAGCAAAAAGGATCAAAAAGACTTACGCACCAGTGGGAGTCGAACCCGTGACCTCTAGATTCAAAATCAGGCGCGTTAACTAGTCGGCCACGCGCGCACAATKACAGAGGAGGGGTGGATGGCGTATAAGAAGGGGCGCGGAAAAGGGGAGCGGAGGGGAGCAGGAGGGTAGGCGAGATTAGGGGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28867</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>42501</contig_pos>
        <strand>+</strand>
        <context>TCATGAAATT[A/G]TAAAAttagt</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATT</left_flank>
        <right_flank>TAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAGTTTTTGAAACTGCAATTTTTTTTCTTTTTTTTCGGGGATTTTTGGACCTGATTTGGTCAATAAAACCTTTGAGAAACCGTTTTTTGCCAGAATTTTTTAAAAATTATAACTTATTGAAATCGCTATTTAAGTAATTTTTACGCTATGATACACCGCAAAGCCGGCAAGCTTCACGTAGTTCAGCTGGAAAAAAGCAAAAGGTGTCATGAAATGATTTCTAGACCTTGTAGCAAAAAAGCAAAAAGGATCAAAAAGACTTACGCACCAGTGGGAGTCGAACCCGTGACCTCTAGATTCAAAATCAGGCGCGTTAACTAGTCGGCCACGCGCGCACAATTACAGAGGAGGGGTGGATGGCGTATAAGAAGGGGCGCGGAAAAGGGGAGCGGAGGGGAGCAGGAGGGTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATTTTTGTTATCTAGAACAAGAGCTGAGATAAACTAGGTCGAATCTAGAAGCATTAATCTTCTTGATGTTATTGTTAGAGAAGCTGTTTAAGCCTATAAAAGGGTATTTTTAAGCTTCAAAAAGCCTTT</canonical>
            <polymorphic>AAAAAGTTTTTGAAACTGCAATTTTTTTTCTTTTTTTTCGGGGATTTTTGGACCTGATTTGGTCAATAAAACCTTTGAGAAACCGTTTTTTGCCAGAATTTTTTAAAAATTATAACTTATTGAAATCGCTATTTAAGTAATTTTTACGCTATGATACACCGCAAAGCCGGCAAGCTTCACGTAGTTCAGCTGGAAAAAAGCAAAAGGTGTCATGAAATGATTTCTAGACCTTGTAGCAAAAAAGCAAAAAGGATCAAAAAGACTTACGCACCAGTGGGAGTCGAACCCGTGACCTCTAGATTCAAAATCAGGCGCGTTAACTAGTCGGCCACGCGCGCACAATTACAGAGGAGGGGTGGATGGCGTATAAGAAGGGGCGCGGAAAAGGGGAGCGGAGGGGAGCAGGAGGGTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTRTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATTTTTGTTATCTAGAACAAGAGCTGAGATAAACTAGGTCGAATCTAGAAGCATTAATCTTCTTGATGTTATTGTTAGAGAAGCTGTTTAAGCCTATAAAAGGGTATTTTTAAGCTTCAAAAAGCCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGGCGAGATTAGGGGATA</pcr_primer_p1>
		<pcr_primer_p2>GCTTCTCTAACAATAACATCAAGA</pcr_primer_p2>
		<pcr_amplicon_size>546</pcr_amplicon_size>
		<canonical_amplicon>GTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATTTTTGTTATCTAGAACAAGAGCTGAGATAAACTAGGTCGAATCTAGAAGCATTAATCTTCTTGATGTTATTGTTAGAGAAGC</canonical_amplicon>
		<polymorphic_amplicon>GTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTRTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATTTTTGTTATCTAGAACAAGAGCTGAGATAAACTAGGTCGAATCTAGAAGCATTAATCTTCTTGATGTTATTGTTAGAGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28868</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>42526</contig_pos>
        <strand></strand>
        <context>aatgttccgg[G/T]aactccacaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGG</left_flank>
        <right_flank>AACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCTTTTTTTTCGGGGATTTTTGGACCTGATTTGGTCAATAAAACCTTTGAGAAACCGTTTTTTGCCAGAATTTTTTAAAAATTATAACTTATTGAAATCGCTATTTAAGTAATTTTTACGCTATGATACACCGCAAAGCCGGCAAGCTTCACGTAGTTCAGCTGGAAAAAAGCAAAAGGTGTCATGAAATGATTTCTAGACCTTGTAGCAAAAAAGCAAAAAGGATCAAAAAGACTTACGCACCAGTGGGAGTCGAACCCGTGACCTCTAGATTCAAAATCAGGCGCGTTAACTAGTCGGCCACGCGCGCACAATTACAGAGGAGGGGTGGATGGCGTATAAGAAGGGGCGCGGAAAAGGGGAGCGGAGGGGAGCAGGAGGGTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATTTTTGTTATCTAGAACAAGAGCTGAGATAAACTAGGTCGAATCTAGAAGCATTAATCTTCTTGATGTTATTGTTAGAGAAGCTGTTTAAGCCTATAAAAGGGTATTTTTAAGCTTCAAAAAGCCTTTGAGAACCTCTAAAACCTTTTTTCAA</canonical>
            <polymorphic>TTTTCTTTTTTTTCGGGGATTTTTGGACCTGATTTGGTCAATAAAACCTTTGAGAAACCGTTTTTTGCCAGAATTTTTTAAAAATTATAACTTATTGAAATCGCTATTTAAGTAATTTTTACGCTATGATACACCGCAAAGCCGGCAAGCTTCACGTAGTTCAGCTGGAAAAAAGCAAAAGGTGTCATGAAATGATTTCTAGACCTTGTAGCAAAAAAGCAAAAAGGATCAAAAAGACTTACGCACCAGTGGGAGTCGAACCCGTGACCTCTAGATTCAAAATCAGGCGCGTTAACTAGTCGGCCACGCGCGCACAATTACAGAGGAGGGGTGGATGGCGTATAAGAAGGGGCGCGGAAAAGGGGAGCGGAGGGGAGCAGGAGGGTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGKAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATTTTTGTTATCTAGAACAAGAGCTGAGATAAACTAGGTCGAATCTAGAAGCATTAATCTTCTTGATGTTATTGTTAGAGAAGCTGTTTAAGCCTATAAAAGGGTATTTTTAAGCTTCAAAAAGCCTTTGAGAACCTCTAAAACCTTTTTTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGGCGAGATTAGGGGATA</pcr_primer_p1>
		<pcr_primer_p2>GCTTCTCTAACAATAACATCAAGA</pcr_primer_p2>
		<pcr_amplicon_size>546</pcr_amplicon_size>
		<canonical_amplicon>GTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATTTTTGTTATCTAGAACAAGAGCTGAGATAAACTAGGTCGAATCTAGAAGCATTAATCTTCTTGATGTTATTGTTAGAGAAGC</canonical_amplicon>
		<polymorphic_amplicon>GTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGKAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATTTTTGTTATCTAGAACAAGAGCTGAGATAAACTAGGTCGAATCTAGAAGCATTAATCTTCTTGATGTTATTGTTAGAGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28869</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>42540</contig_pos>
        <strand></strand>
        <context>tccacaattt[A/C]atagaaatct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTT</left_flank>
        <right_flank>ATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGGATTTTTGGACCTGATTTGGTCAATAAAACCTTTGAGAAACCGTTTTTTGCCAGAATTTTTTAAAAATTATAACTTATTGAAATCGCTATTTAAGTAATTTTTACGCTATGATACACCGCAAAGCCGGCAAGCTTCACGTAGTTCAGCTGGAAAAAAGCAAAAGGTGTCATGAAATGATTTCTAGACCTTGTAGCAAAAAAGCAAAAAGGATCAAAAAGACTTACGCACCAGTGGGAGTCGAACCCGTGACCTCTAGATTCAAAATCAGGCGCGTTAACTAGTCGGCCACGCGCGCACAATTACAGAGGAGGGGTGGATGGCGTATAAGAAGGGGCGCGGAAAAGGGGAGCGGAGGGGAGCAGGAGGGTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATTTTTGTTATCTAGAACAAGAGCTGAGATAAACTAGGTCGAATCTAGAAGCATTAATCTTCTTGATGTTATTGTTAGAGAAGCTGTTTAAGCCTATAAAAGGGTATTTTTAAGCTTCAAAAAGCCTTTGAGAACCTCTAAAACCTTTTTTCAACCTCAAAAAGCCTC</canonical>
            <polymorphic>GGGGATTTTTGGACCTGATTTGGTCAATAAAACCTTTGAGAAACCGTTTTTTGCCAGAATTTTTTAAAAATTATAACTTATTGAAATCGCTATTTAAGTAATTTTTACGCTATGATACACCGCAAAGCCGGCAAGCTTCACGTAGTTCAGCTGGAAAAAAGCAAAAGGTGTCATGAAATGATTTCTAGACCTTGTAGCAAAAAAGCAAAAAGGATCAAAAAGACTTACGCACCAGTGGGAGTCGAACCCGTGACCTCTAGATTCAAAATCAGGCGCGTTAACTAGTCGGCCACGCGCGCACAATTACAGAGGAGGGGTGGATGGCGTATAAGAAGGGGCGCGGAAAAGGGGAGCGGAGGGGAGCAGGAGGGTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTMATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATTTTTGTTATCTAGAACAAGAGCTGAGATAAACTAGGTCGAATCTAGAAGCATTAATCTTCTTGATGTTATTGTTAGAGAAGCTGTTTAAGCCTATAAAAGGGTATTTTTAAGCTTCAAAAAGCCTTTGAGAACCTCTAAAACCTTTTTTCAACCTCAAAAAGCCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>238 184 145 75 64 64 58 45 41 34 30 22</canonical_bands>
                <polymorphic_bands>238 184 145 120 64 64 58 41 34 30 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGGCGAGATTAGGGGATA</pcr_primer_p1>
		<pcr_primer_p2>GCTTCTCTAACAATAACATCAAGA</pcr_primer_p2>
		<pcr_amplicon_size>546</pcr_amplicon_size>
		<canonical_amplicon>GTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATTTTTGTTATCTAGAACAAGAGCTGAGATAAACTAGGTCGAATCTAGAAGCATTAATCTTCTTGATGTTATTGTTAGAGAAGC</canonical_amplicon>
		<polymorphic_amplicon>GTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTMATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATTTTTGTTATCTAGAACAAGAGCTGAGATAAACTAGGTCGAATCTAGAAGCATTAATCTTCTTGATGTTATTGTTAGAGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28870</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>42604</contig_pos>
        <strand></strand>
        <context>gaaattgaca[G/T]atttccatga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACA</left_flank>
        <right_flank>ATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAAATTATAACTTATTGAAATCGCTATTTAAGTAATTTTTACGCTATGATACACCGCAAAGCCGGCAAGCTTCACGTAGTTCAGCTGGAAAAAAGCAAAAGGTGTCATGAAATGATTTCTAGACCTTGTAGCAAAAAAGCAAAAAGGATCAAAAAGACTTACGCACCAGTGGGAGTCGAACCCGTGACCTCTAGATTCAAAATCAGGCGCGTTAACTAGTCGGCCACGCGCGCACAATTACAGAGGAGGGGTGGATGGCGTATAAGAAGGGGCGCGGAAAAGGGGAGCGGAGGGGAGCAGGAGGGTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATTTTTGTTATCTAGAACAAGAGCTGAGATAAACTAGGTCGAATCTAGAAGCATTAATCTTCTTGATGTTATTGTTAGAGAAGCTGTTTAAGCCTATAAAAGGGTATTTTTAAGCTTCAAAAAGCCTTTGAGAACCTCTAAAACCTTTTTTCAACCTCAAAAAGCCTCGAAAAACTCAAGTAAATCCTTCCATTTGTATTCTGTCGCTCAAAAACATAACCAATTTTCTTTT</canonical>
            <polymorphic>TAAAAATTATAACTTATTGAAATCGCTATTTAAGTAATTTTTACGCTATGATACACCGCAAAGCCGGCAAGCTTCACGTAGTTCAGCTGGAAAAAAGCAAAAGGTGTCATGAAATGATTTCTAGACCTTGTAGCAAAAAAGCAAAAAGGATCAAAAAGACTTACGCACCAGTGGGAGTCGAACCCGTGACCTCTAGATTCAAAATCAGGCGCGTTAACTAGTCGGCCACGCGCGCACAATTACAGAGGAGGGGTGGATGGCGTATAAGAAGGGGCGCGGAAAAGGGGAGCGGAGGGGAGCAGGAGGGTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAKATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATTTTTGTTATCTAGAACAAGAGCTGAGATAAACTAGGTCGAATCTAGAAGCATTAATCTTCTTGATGTTATTGTTAGAGAAGCTGTTTAAGCCTATAAAAGGGTATTTTTAAGCTTCAAAAAGCCTTTGAGAACCTCTAAAACCTTTTTTCAACCTCAAAAAGCCTCGAAAAACTCAAGTAAATCCTTCCATTTGTATTCTGTCGCTCAAAAACATAACCAATTTTCTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGGCGAGATTAGGGGATA</pcr_primer_p1>
		<pcr_primer_p2>GCTTCTCTAACAATAACATCAAGA</pcr_primer_p2>
		<pcr_amplicon_size>546</pcr_amplicon_size>
		<canonical_amplicon>GTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATTTTTGTTATCTAGAACAAGAGCTGAGATAAACTAGGTCGAATCTAGAAGCATTAATCTTCTTGATGTTATTGTTAGAGAAGC</canonical_amplicon>
		<polymorphic_amplicon>GTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAKATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATTTTTGTTATCTAGAACAAGAGCTGAGATAAACTAGGTCGAATCTAGAAGCATTAATCTTCTTGATGTTATTGTTAGAGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28871</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>42654</contig_pos>
        <strand></strand>
        <context>tgatgaaaat[C/T]tttgggaaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAAT</left_flank>
        <right_flank>TTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATACACCGCAAAGCCGGCAAGCTTCACGTAGTTCAGCTGGAAAAAAGCAAAAGGTGTCATGAAATGATTTCTAGACCTTGTAGCAAAAAAGCAAAAAGGATCAAAAAGACTTACGCACCAGTGGGAGTCGAACCCGTGACCTCTAGATTCAAAATCAGGCGCGTTAACTAGTCGGCCACGCGCGCACAATTACAGAGGAGGGGTGGATGGCGTATAAGAAGGGGCGCGGAAAAGGGGAGCGGAGGGGAGCAGGAGGGTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATTTTTGTTATCTAGAACAAGAGCTGAGATAAACTAGGTCGAATCTAGAAGCATTAATCTTCTTGATGTTATTGTTAGAGAAGCTGTTTAAGCCTATAAAAGGGTATTTTTAAGCTTCAAAAAGCCTTTGAGAACCTCTAAAACCTTTTTTCAACCTCAAAAAGCCTCGAAAAACTCAAGTAAATCCTTCCATTTGTATTCTGTCGCTCAAAAACATAACCAATTTTCTTTTTTCCCATTCTTCCACACCCTAGAGACATTCCTCTATCCGTTTTGACATTT</canonical>
            <polymorphic>ATACACCGCAAAGCCGGCAAGCTTCACGTAGTTCAGCTGGAAAAAAGCAAAAGGTGTCATGAAATGATTTCTAGACCTTGTAGCAAAAAAGCAAAAAGGATCAAAAAGACTTACGCACCAGTGGGAGTCGAACCCGTGACCTCTAGATTCAAAATCAGGCGCGTTAACTAGTCGGCCACGCGCGCACAATTACAGAGGAGGGGTGGATGGCGTATAAGAAGGGGCGCGGAAAAGGGGAGCGGAGGGGAGCAGGAGGGTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATYTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATTTTTGTTATCTAGAACAAGAGCTGAGATAAACTAGGTCGAATCTAGAAGCATTAATCTTCTTGATGTTATTGTTAGAGAAGCTGTTTAAGCCTATAAAAGGGTATTTTTAAGCTTCAAAAAGCCTTTGAGAACCTCTAAAACCTTTTTTCAACCTCAAAAAGCCTCGAAAAACTCAAGTAAATCCTTCCATTTGTATTCTGTCGCTCAAAAACATAACCAATTTTCTTTTTTCCCATTCTTCCACACCCTAGAGACATTCCTCTATCCGTTTTGACATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATNNNNATC</site>
                <isoschizomers>
                    <enzyme>BsaBI</enzyme>
                    <enzyme>Bse8I</enzyme>
                    <enzyme>BseJI</enzyme>
                    <enzyme>BsiBI</enzyme>
                    <enzyme>BsrBRI</enzyme>
                    <enzyme>MamI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGGCGAGATTAGGGGATA</pcr_primer_p1>
		<pcr_primer_p2>GCTTCTCTAACAATAACATCAAGA</pcr_primer_p2>
		<pcr_amplicon_size>546</pcr_amplicon_size>
		<canonical_amplicon>GTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATTTTTGTTATCTAGAACAAGAGCTGAGATAAACTAGGTCGAATCTAGAAGCATTAATCTTCTTGATGTTATTGTTAGAGAAGC</canonical_amplicon>
		<polymorphic_amplicon>GTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATYTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATTTTTGTTATCTAGAACAAGAGCTGAGATAAACTAGGTCGAATCTAGAAGCATTAATCTTCTTGATGTTATTGTTAGAGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28872</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>42672</contig_pos>
        <strand></strand>
        <context>aaaatgaccg[G/A]aaawatagaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCG</left_flank>
        <right_flank>AAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCTTCACGTAGTTCAGCTGGAAAAAAGCAAAAGGTGTCATGAAATGATTTCTAGACCTTGTAGCAAAAAAGCAAAAAGGATCAAAAAGACTTACGCACCAGTGGGAGTCGAACCCGTGACCTCTAGATTCAAAATCAGGCGCGTTAACTAGTCGGCCACGCGCGCACAATTACAGAGGAGGGGTGGATGGCGTATAAGAAGGGGCGCGGAAAAGGGGAGCGGAGGGGAGCAGGAGGGTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATTTTTGTTATCTAGAACAAGAGCTGAGATAAACTAGGTCGAATCTAGAAGCATTAATCTTCTTGATGTTATTGTTAGAGAAGCTGTTTAAGCCTATAAAAGGGTATTTTTAAGCTTCAAAAAGCCTTTGAGAACCTCTAAAACCTTTTTTCAACCTCAAAAAGCCTCGAAAAACTCAAGTAAATCCTTCCATTTGTATTCTGTCGCTCAAAAACATAACCAATTTTCTTTTTTCCCATTCTTCCACACCCTAGAGACATTCCTCTATCCGTTTTGACATTTGGTGTCCGTCAATCATAA</canonical>
            <polymorphic>AAGCTTCACGTAGTTCAGCTGGAAAAAAGCAAAAGGTGTCATGAAATGATTTCTAGACCTTGTAGCAAAAAAGCAAAAAGGATCAAAAAGACTTACGCACCAGTGGGAGTCGAACCCGTGACCTCTAGATTCAAAATCAGGCGCGTTAACTAGTCGGCCACGCGCGCACAATTACAGAGGAGGGGTGGATGGCGTATAAGAAGGGGCGCGGAAAAGGGGAGCGGAGGGGAGCAGGAGGGTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGRAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATTTTTGTTATCTAGAACAAGAGCTGAGATAAACTAGGTCGAATCTAGAAGCATTAATCTTCTTGATGTTATTGTTAGAGAAGCTGTTTAAGCCTATAAAAGGGTATTTTTAAGCTTCAAAAAGCCTTTGAGAACCTCTAAAACCTTTTTTCAACCTCAAAAAGCCTCGAAAAACTCAAGTAAATCCTTCCATTTGTATTCTGTCGCTCAAAAACATAACCAATTTTCTTTTTTCCCATTCTTCCACACCCTAGAGACATTCCTCTATCCGTTTTGACATTTGGTGTCCGTCAATCATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>451 350 147 52</canonical_bands>
                <polymorphic_bands>451 350 199</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGGCGAGATTAGGGGATA</pcr_primer_p1>
		<pcr_primer_p2>GCTTCTCTAACAATAACATCAAGA</pcr_primer_p2>
		<pcr_amplicon_size>546</pcr_amplicon_size>
		<canonical_amplicon>GTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATTTTTGTTATCTAGAACAAGAGCTGAGATAAACTAGGTCGAATCTAGAAGCATTAATCTTCTTGATGTTATTGTTAGAGAAGC</canonical_amplicon>
		<polymorphic_amplicon>GTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGRAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATTTTTGTTATCTAGAACAAGAGCTGAGATAAACTAGGTCGAATCTAGAAGCATTAATCTTCTTGATGTTATTGTTAGAGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28873</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>42676</contig_pos>
        <strand></strand>
        <context>tgaccgraaa[A/T]atagaagggc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAA</left_flank>
        <right_flank>ATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCACGTAGTTCAGCTGGAAAAAAGCAAAAGGTGTCATGAAATGATTTCTAGACCTTGTAGCAAAAAAGCAAAAAGGATCAAAAAGACTTACGCACCAGTGGGAGTCGAACCCGTGACCTCTAGATTCAAAATCAGGCGCGTTAACTAGTCGGCCACGCGCGCACAATTACAGAGGAGGGGTGGATGGCGTATAAGAAGGGGCGCGGAAAAGGGGAGCGGAGGGGAGCAGGAGGGTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATTTTTGTTATCTAGAACAAGAGCTGAGATAAACTAGGTCGAATCTAGAAGCATTAATCTTCTTGATGTTATTGTTAGAGAAGCTGTTTAAGCCTATAAAAGGGTATTTTTAAGCTTCAAAAAGCCTTTGAGAACCTCTAAAACCTTTTTTCAACCTCAAAAAGCCTCGAAAAACTCAAGTAAATCCTTCCATTTGTATTCTGTCGCTCAAAAACATAACCAATTTTCTTTTTTCCCATTCTTCCACACCCTAGAGACATTCCTCTATCCGTTTTGACATTTGGTGTCCGTCAATCATAAAATT</canonical>
            <polymorphic>TTCACGTAGTTCAGCTGGAAAAAAGCAAAAGGTGTCATGAAATGATTTCTAGACCTTGTAGCAAAAAAGCAAAAAGGATCAAAAAGACTTACGCACCAGTGGGAGTCGAACCCGTGACCTCTAGATTCAAAATCAGGCGCGTTAACTAGTCGGCCACGCGCGCACAATTACAGAGGAGGGGTGGATGGCGTATAAGAAGGGGCGCGGAAAAGGGGAGCGGAGGGGAGCAGGAGGGTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAWATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATTTTTGTTATCTAGAACAAGAGCTGAGATAAACTAGGTCGAATCTAGAAGCATTAATCTTCTTGATGTTATTGTTAGAGAAGCTGTTTAAGCCTATAAAAGGGTATTTTTAAGCTTCAAAAAGCCTTTGAGAACCTCTAAAACCTTTTTTCAACCTCAAAAAGCCTCGAAAAACTCAAGTAAATCCTTCCATTTGTATTCTGTCGCTCAAAAACATAACCAATTTTCTTTTTTCCCATTCTTCCACACCCTAGAGACATTCCTCTATCCGTTTTGACATTTGGTGTCCGTCAATCATAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGGCGAGATTAGGGGATA</pcr_primer_p1>
		<pcr_primer_p2>GCTTCTCTAACAATAACATCAAGA</pcr_primer_p2>
		<pcr_amplicon_size>546</pcr_amplicon_size>
		<canonical_amplicon>GTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATTTTTGTTATCTAGAACAAGAGCTGAGATAAACTAGGTCGAATCTAGAAGCATTAATCTTCTTGATGTTATTGTTAGAGAAGC</canonical_amplicon>
		<polymorphic_amplicon>GTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAWATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATTTTTGTTATCTAGAACAAGAGCTGAGATAAACTAGGTCGAATCTAGAAGCATTAATCTTCTTGATGTTATTGTTAGAGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28874</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>42738</contig_pos>
        <strand></strand>
        <context>ttctaataca[A/G]gttttacGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACA</left_flank>
        <right_flank>GTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAGCAAAAAGGATCAAAAAGACTTACGCACCAGTGGGAGTCGAACCCGTGACCTCTAGATTCAAAATCAGGCGCGTTAACTAGTCGGCCACGCGCGCACAATTACAGAGGAGGGGTGGATGGCGTATAAGAAGGGGCGCGGAAAAGGGGAGCGGAGGGGAGCAGGAGGGTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATTTTTGTTATCTAGAACAAGAGCTGAGATAAACTAGGTCGAATCTAGAAGCATTAATCTTCTTGATGTTATTGTTAGAGAAGCTGTTTAAGCCTATAAAAGGGTATTTTTAAGCTTCAAAAAGCCTTTGAGAACCTCTAAAACCTTTTTTCAACCTCAAAAAGCCTCGAAAAACTCAAGTAAATCCTTCCATTTGTATTCTGTCGCTCAAAAACATAACCAATTTTCTTTTTTCCCATTCTTCCACACCCTAGAGACATTCCTCTATCCGTTTTGACATTTGGTGTCCGTCAATCATAAAATTCTGTCGGTTATCCAATTTCGGCGCCTTTTTTCTCGCGTTTTTTTGCGCCTAAATGGTCCCGT</canonical>
            <polymorphic>AAAAAAGCAAAAAGGATCAAAAAGACTTACGCACCAGTGGGAGTCGAACCCGTGACCTCTAGATTCAAAATCAGGCGCGTTAACTAGTCGGCCACGCGCGCACAATTACAGAGGAGGGGTGGATGGCGTATAAGAAGGGGCGCGGAAAAGGGGAGCGGAGGGGAGCAGGAGGGTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACARGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATTTTTGTTATCTAGAACAAGAGCTGAGATAAACTAGGTCGAATCTAGAAGCATTAATCTTCTTGATGTTATTGTTAGAGAAGCTGTTTAAGCCTATAAAAGGGTATTTTTAAGCTTCAAAAAGCCTTTGAGAACCTCTAAAACCTTTTTTCAACCTCAAAAAGCCTCGAAAAACTCAAGTAAATCCTTCCATTTGTATTCTGTCGCTCAAAAACATAACCAATTTTCTTTTTTCCCATTCTTCCACACCCTAGAGACATTCCTCTATCCGTTTTGACATTTGGTGTCCGTCAATCATAAAATTCTGTCGGTTATCCAATTTCGGCGCCTTTTTTCTCGCGTTTTTTTGCGCCTAAATGGTCCCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGGCGAGATTAGGGGATA</pcr_primer_p1>
		<pcr_primer_p2>GCTTCTCTAACAATAACATCAAGA</pcr_primer_p2>
		<pcr_amplicon_size>546</pcr_amplicon_size>
		<canonical_amplicon>GTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACAAGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATTTTTGTTATCTAGAACAAGAGCTGAGATAAACTAGGTCGAATCTAGAAGCATTAATCTTCTTGATGTTATTGTTAGAGAAGC</canonical_amplicon>
		<polymorphic_amplicon>GTAGGCGAGATTAGGGGATAACTACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGGGCCCCCTTCACAACATGTCATGAAATTGTAAAATTAGTGAAAAATGTTCCGGGAACTCCACAATTTAATAGAAATCTGTTGAAACTCTATTTTTTGCTCAAAAACTTGATTAATTTTCGTGAAATTGACAGATTTCCATGACTTTTGAACGAAAATTCGTCGATTTTTTTTGATGAAAATCTTTGGGAAAAATGACCGGAAAAATAGAAGGGCTCCCTCTGATTGAAGGGTCCCTGTAATAGAAGGGCCGGCCCTTCTAATACARGTTTTACGGTCACCTGTAAAAATAGAGCCTTCTAACTTTGATTCAATTTATCTCGATTCCTATAAAAGATATCAAGAAGTTGTTAACTATTGAATTGTTTTTTAGATTACGGGGCACATTTTGTTAATTGACCAATTTTTGTTATCTAGAACAAGAGCTGAGATAAACTAGGTCGAATCTAGAAGCATTAATCTTCTTGATGTTATTGTTAGAGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28875</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>84729</contig_pos>
        <strand></strand>
        <context>ggattttgaa[A/T]tttttttttg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTATGATTATAAAACTGTGAGTTTTAATTTTTGGAATTTCGGATTTTGAA</left_flank>
        <right_flank>TTTTTTTTTGACTTTTTCAGAGGAAAAAAAAGTAGTTCATATTTTTCCTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTATACTTGCCCGTTAAGCCGAATTATCTCGGTTACTGTAAGAGATAGCAAAAAGTTTTCAACCAGTAAAATATTACTGATAACTTGATAAACATTTTATTAGTTAACAAATTTTTGATATCTCCTACACTAACCGAGATAATTGAGCTCAAAGTGTGCCTACTGTAGGCAAGGTCTTAGCAAACTTTATTACTCTTTTCAAAATTAAAAATTGAAAATTGAATCAAAAAATTGGTTAAATTTAGAAAACCTTTAAACAAAAAATTATTTTTCTGACTTCATCACCAAATTTAATTGTTTTTTTTTTGAAACAGAAAAAAAAACTTTTTTGTAAAAGAATTAACTTTTTTTTCAGAATGGTGTCTACGAATACAATATGAAAGTTGCCAAAAAGCTAACGATGTCGTATAATAACGACAATCCAGCCAAACATGCGACACCAGTGGATTATGATTATAAAACTGTGAGTTTTAATTTTTGGAATTTCGGATTTTGAAATTTTTTTTTGACTTTTTCAGAGGAAAAAAAAGTAGTTCATATTTTTCCTATTTGTCTGAAAATTTCAGAATATACTAAACAAAAATACAAAAATCGAACTTTGATTTCGTAGTTGACAACTTTTTTGTAAAATTTCATTCAAACGAGATAGGCGCTTCTTCTTAAAGTGACCTAAAAGTGCTAATTTTTGGCATTTTCGGCAATTTTTTGGATTTTTCAGCTCCAAAATTATATTTTTCCTCTGACAATTTTATATCAATCGAAAGCTAAAATGTTCTACAAAACCATCTATTTTTTTCATTTCTATATCTCAAAATTGAAGCAAGTTATGCGCCTTTAAACTTTCAGATAGACGCAGAAAAGCGTACTCTACTGAAAAAGTTCAAATTTGATTTATTTTCGTGCATTTCGAGTTCAATTATCTCGATTTCTGTGAAAGATATCAAAAACTTGTCAATTAATAAAATGCTCATCATATTATCACCAGCATTTTATTAGTC</canonical>
            <polymorphic>AACTATACTTGCCCGTTAAGCCGAATTATCTCGGTTACTGTAAGAGATAGCAAAAAGTTTTCAACCAGTAAAATATTACTGATAACTTGATAAACATTTTATTAGTTAACAAATTTTTGATATCTCCTACACTAACCGAGATAATTGAGCTCAAAGTGTGCCTACTGTAGGCAAGGTCTTAGCAAACTTTATTACTCTTTTCAAAATTAAAAATTGAAAATTGAATCAAAAAATTGGTTAAATTTAGAAAACCTTTAAACAAAAAATTATTTTTCTGACTTCATCACCAAATTTAATTGTTTTTTTTTTGAAACAGAAAAAAAAACTTTTTTGTAAAAGAATTAACTTTTTTTTCAGAATGGTGTCTACGAATACAATATGAAAGTTGCCAAAAAGCTAACGATGTCGTATAATAACGACAATCCAGCCAAACATGCGACACCAGTGGATTATGATTATAAAACTGTGAGTTTTAATTTTTGGAATTTCGGATTTTGAAWTTTTTTTTTGACTTTTTCAGAGGAAAAAAAAGTAGTTCATATTTTTCCTATTTGTCTGAAAATTTCAGAATATACTAAACAAAAATACAAAAATCGAACTTTGATTTCGTAGTTGACAACTTTTTTGTAAAATTTCATTCAAACGAGATAGGCGCTTCTTCTTAAAGTGACCTAAAAGTGCTAATTTTTGGCATTTTCGGCAATTTTTTGGATTTTTCAGCTCCAAAATTATATTTTTCCTCTGACAATTTTATATCAATCGAAAGCTAAAATGTTCTACAAAACCATCTATTTTTTTCATTTCTATATCTCAAAATTGAAGCAAGTTATGCGCCTTTAAACTTTCAGATAGACGCAGAAAAGCGTACTCTACTGAAAAAGTTCAAATTTGATTTATTTTCGTGCATTTCGAGTTCAATTATCTCGATTTCTGTGAAAGATATCAAAAACTTGTCAATTAATAAAATGCTCATCATATTATCACCAGCATTTTATTAGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>255 194 129 115 111 70 62 49 15</canonical_bands>
                <polymorphic_bands>255 194 129 115 111 77 70 49</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>135 88 71 70 68 62 62 52 45 45 39 31 31 25 25 24 23 20 19 15 13 9 9 7 7 5</canonical_bands>
                <polymorphic_bands>135 88 77 71 70 68 62 52 45 45 39 31 31 25 25 24 23 20 19 13 9 9 7 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGCTAACGATGTCGTATAAT</pcr_primer_p1>
		<pcr_primer_p2>GCACTTTTAGGTCACTTTAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>290</pcr_amplicon_size>
		<canonical_amplicon>AAAAGCTAACGATGTCGTATAATAACGACAATCCAGCCAAACATGCGACACCAGTGGATTATGATTATAAAACTGTGAGTTTTAATTTTTGGAATTTCGGATTTTGAAATTTTTTTTTGACTTTTTCAGAGGAAAAAAAAGTAGTTCATATTTTTCCTATTTGTCTGAAAATTTCAGAATATACTAAACAAAAATACAAAAATCGAACTTTGATTTCGTAGTTGACAACTTTTTTGTAAAATTTCATTCAAACGAGATAGGCGCTTCTTCTTAAAGTGACCTAAAAGTGC</canonical_amplicon>
		<polymorphic_amplicon>AAAAGCTAACGATGTCGTATAATAACGACAATCCAGCCAAACATGCGACACCAGTGGATTATGATTATAAAACTGTGAGTTTTAATTTTTGGAATTTCGGATTTTGAAWTTTTTTTTTGACTTTTTCAGAGGAAAAAAAAGTAGTTCATATTTTTCCTATTTGTCTGAAAATTTCAGAATATACTAAACAAAAATACAAAAATCGAACTTTGATTTCGTAGTTGACAACTTTTTTGTAAAATTTCATTCAAACGAGATAGGCGCTTCTTCTTAAAGTGACCTAAAAGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28876</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>84824</contig_pos>
        <strand></strand>
        <context>atacaaaaat[C/A]gaactttgat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTCCTATTTGTCTGAAAATTTCAGAATATACTAAACAAAAATACAAAAAT</left_flank>
        <right_flank>GAACTTTGATTTCGTAGTTGACAACTTTTTTGTAAAATTTCATTCAAACG</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTATTAGTTAACAAATTTTTGATATCTCCTACACTAACCGAGATAATTGAGCTCAAAGTGTGCCTACTGTAGGCAAGGTCTTAGCAAACTTTATTACTCTTTTCAAAATTAAAAATTGAAAATTGAATCAAAAAATTGGTTAAATTTAGAAAACCTTTAAACAAAAAATTATTTTTCTGACTTCATCACCAAATTTAATTGTTTTTTTTTTGAAACAGAAAAAAAAACTTTTTTGTAAAAGAATTAACTTTTTTTTCAGAATGGTGTCTACGAATACAATATGAAAGTTGCCAAAAAGCTAACGATGTCGTATAATAACGACAATCCAGCCAAACATGCGACACCAGTGGATTATGATTATAAAACTGTGAGTTTTAATTTTTGGAATTTCGGATTTTGAAATTTTTTTTTGACTTTTTCAGAGGAAAAAAAAGTAGTTCATATTTTTCCTATTTGTCTGAAAATTTCAGAATATACTAAACAAAAATACAAAAATCGAACTTTGATTTCGTAGTTGACAACTTTTTTGTAAAATTTCATTCAAACGAGATAGGCGCTTCTTCTTAAAGTGACCTAAAAGTGCTAATTTTTGGCATTTTCGGCAATTTTTTGGATTTTTCAGCTCCAAAATTATATTTTTCCTCTGACAATTTTATATCAATCGAAAGCTAAAATGTTCTACAAAACCATCTATTTTTTTCATTTCTATATCTCAAAATTGAAGCAAGTTATGCGCCTTTAAACTTTCAGATAGACGCAGAAAAGCGTACTCTACTGAAAAAGTTCAAATTTGATTTATTTTCGTGCATTTCGAGTTCAATTATCTCGATTTCTGTGAAAGATATCAAAAACTTGTCAATTAATAAAATGCTCATCATATTATCACCAGCATTTTATTAGTCGACAAATTTTTGTTATCTCTTACCAGGGGTGGGTTAGGATGGGAGAAAAACCTTGACGTTTTGCAAGATTTTCTCGCTTCTTGTGCAAAACGAGA</canonical>
            <polymorphic>ATTTTATTAGTTAACAAATTTTTGATATCTCCTACACTAACCGAGATAATTGAGCTCAAAGTGTGCCTACTGTAGGCAAGGTCTTAGCAAACTTTATTACTCTTTTCAAAATTAAAAATTGAAAATTGAATCAAAAAATTGGTTAAATTTAGAAAACCTTTAAACAAAAAATTATTTTTCTGACTTCATCACCAAATTTAATTGTTTTTTTTTTGAAACAGAAAAAAAAACTTTTTTGTAAAAGAATTAACTTTTTTTTCAGAATGGTGTCTACGAATACAATATGAAAGTTGCCAAAAAGCTAACGATGTCGTATAATAACGACAATCCAGCCAAACATGCGACACCAGTGGATTATGATTATAAAACTGTGAGTTTTAATTTTTGGAATTTCGGATTTTGAAATTTTTTTTTGACTTTTTCAGAGGAAAAAAAAGTAGTTCATATTTTTCCTATTTGTCTGAAAATTTCAGAATATACTAAACAAAAATACAAAAATMGAACTTTGATTTCGTAGTTGACAACTTTTTTGTAAAATTTCATTCAAACGAGATAGGCGCTTCTTCTTAAAGTGACCTAAAAGTGCTAATTTTTGGCATTTTCGGCAATTTTTTGGATTTTTCAGCTCCAAAATTATATTTTTCCTCTGACAATTTTATATCAATCGAAAGCTAAAATGTTCTACAAAACCATCTATTTTTTTCATTTCTATATCTCAAAATTGAAGCAAGTTATGCGCCTTTAAACTTTCAGATAGACGCAGAAAAGCGTACTCTACTGAAAAAGTTCAAATTTGATTTATTTTCGTGCATTTCGAGTTCAATTATCTCGATTTCTGTGAAAGATATCAAAAACTTGTCAATTAATAAAATGCTCATCATATTATCACCAGCATTTTATTAGTCGACAAATTTTTGTTATCTCTTACCAGGGGTGGGTTAGGATGGGAGAAAAACCTTGACGTTTTGCAAGATTTTCTCGCTTCTTGTGCAAAACGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 166 149 95 75 15</canonical_bands>
                <polymorphic_bands>666 149 95 75 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGCTAACGATGTCGTATAAT</pcr_primer_p1>
		<pcr_primer_p2>GCACTTTTAGGTCACTTTAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>290</pcr_amplicon_size>
		<canonical_amplicon>AAAAGCTAACGATGTCGTATAATAACGACAATCCAGCCAAACATGCGACACCAGTGGATTATGATTATAAAACTGTGAGTTTTAATTTTTGGAATTTCGGATTTTGAAATTTTTTTTTGACTTTTTCAGAGGAAAAAAAAGTAGTTCATATTTTTCCTATTTGTCTGAAAATTTCAGAATATACTAAACAAAAATACAAAAATCGAACTTTGATTTCGTAGTTGACAACTTTTTTGTAAAATTTCATTCAAACGAGATAGGCGCTTCTTCTTAAAGTGACCTAAAAGTGC</canonical_amplicon>
		<polymorphic_amplicon>AAAAGCTAACGATGTCGTATAATAACGACAATCCAGCCAAACATGCGACACCAGTGGATTATGATTATAAAACTGTGAGTTTTAATTTTTGGAATTTCGGATTTTGAAATTTTTTTTTGACTTTTTCAGAGGAAAAAAAAGTAGTTCATATTTTTCCTATTTGTCTGAAAATTTCAGAATATACTAAACAAAAATACAAAAATMGAACTTTGATTTCGTAGTTGACAACTTTTTTGTAAAATTTCATTCAAACGAGATAGGCGCTTCTTCTTAAAGTGACCTAAAAGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28879</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>91762</contig_pos>
        <strand></strand>
        <context>attattcttt[C/G]atatctttca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAAAATATTTATCATAATATCACAAACATTTTATCAGTTGATTATTCTTT</left_flank>
        <right_flank>ATATCTTTCACGAGGACCCAGATAAATTGGCTCAGAGTTAGCTACCCAAT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAATCTCGGCGATTCTTCTCAACAACAAAGGATGGTACGATCATGAGATTGTGAAAACTCAACCATTCAATTTGCCACTTGAGAGGTTCAAAATTAAAGCTAGTGAGTTTTTTCTTTAAAGTCCAAAACCATGAAAATCCAAAAATTACTGTTTCATGGGAAAAATAATACTTTGACTTTTTCTATCGTTTTTTGGTAACCCGTCCCAATTCATGCCCAATAATCTCGGTTCCCATAAAAGATATCAAAAAATTGTCAACTAATAAAATATTTATCATAATATCACTAACATTTTATCAGTTAAAACAGTTTTGATATCTCACACAGTAACCGAGATAAAGCGGTTCAAAGTTAGTTGTGTCATTCTATCAGAATGCTTCCCGAATCGTCAACTTGAAGTTCATTTATCTCGGTTCCCATAAGAGATATCAAAAAGTTGTCAACTAATAAAATATTTATCATAATATCACAAACATTTTATCAGTTGATTATTCTTTCATATCTTTCACGAGGACCCAGATAAATTGGCTCAGAGTTAGCTACCCAATTCTCATTTTCAGAAATTCCAAATCTTAAAATCATAGTCTTGAAAAACTAATTTTCTAGACGAGGACATCCTATTCCGTATTGTGAACGGTGGTGTGGCTCAGGAGTTGATGTTATACGTCGATGGACATTCGATGACCGTAGTTGCAGCCGATGGAGATGAAGTTGTTCCAATGCAGGTTGGTTGGGAATTGAAAGTTTGAACAAGCAATCTTGCAACAAAATCCAATCTCCTAGCTTAATTTTGAAGCAAGTTAGACCGTTATTCGCTCCGAGGGCGCGGTCGGCGGGAGGTGGTGAGCGGCGAGCGCGACAGACATGCGCCTCCACACTGTCACGCGCTCTGTTCATCACCTCTCGCTGACCACGTCCTGGCTTATAACTCGCTTCAAAATAGAGCTAGAAACATGATTTTTGTTGCAAAATAAAGAGTACAGTGTGTTAATACGTTT</canonical>
            <polymorphic>ACCAATCTCGGCGATTCTTCTCAACAACAAAGGATGGTACGATCATGAGATTGTGAAAACTCAACCATTCAATTTGCCACTTGAGAGGTTCAAAATTAAAGCTAGTGAGTTTTTTCTTTAAAGTCCAAAACCATGAAAATCCAAAAATTACTGTTTCATGGGAAAAATAATACTTTGACTTTTTCTATCGTTTTTTGGTAACCCGTCCCAATTCATGCCCAATAATCTCGGTTCCCATAAAAGATATCAAAAAATTGTCAACTAATAAAATATTTATCATAATATCACTAACATTTTATCAGTTAAAACAGTTTTGATATCTCACACAGTAACCGAGATAAAGCGGTTCAAAGTTAGTTGTGTCATTCTATCAGAATGCTTCCCGAATCGTCAACTTGAAGTTCATTTATCTCGGTTCCCATAAGAGATATCAAAAAGTTGTCAACTAATAAAATATTTATCATAATATCACAAACATTTTATCAGTTGATTATTCTTTSATATCTTTCACGAGGACCCAGATAAATTGGCTCAGAGTTAGCTACCCAATTCTCATTTTCAGAAATTCCAAATCTTAAAATCATAGTCTTGAAAAACTAATTTTCTAGACGAGGACATCCTATTCCGTATTGTGAACGGTGGTGTGGCTCAGGAGTTGATGTTATACGTCGATGGACATTCGATGACCGTAGTTGCAGCCGATGGAGATGAAGTTGTTCCAATGCAGGTTGGTTGGGAATTGAAAGTTTGAACAAGCAATCTTGCAACAAAATCCAATCTCCTAGCTTAATTTTGAAGCAAGTTAGACCGTTATTCGCTCCGAGGGCGCGGTCGGCGGGAGGTGGTGAGCGGCGAGCGCGACAGACATGCGCCTCCACACTGTCACGCGCTCTGTTCATCACCTCTCGCTGACCACGTCCTGGCTTATAACTCGCTTCAAAATAGAGCTAGAAACATGATTTTTGTTGCAAAATAAAGAGTACAGTGTGTTAATACGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTGACTTTTTCTATCGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCTGAAAATGAGAATTGGGTAG</pcr_primer_p2>
		<pcr_amplicon_size>392</pcr_amplicon_size>
		<canonical_amplicon>ACTTTGACTTTTTCTATCGTTTTTTGGTAACCCGTCCCAATTCATGCCCAATAATCTCGGTTCCCATAAAAGATATCAAAAAATTGTCAACTAATAAAATATTTATCATAATATCACTAACATTTTATCAGTTAAAACAGTTTTGATATCTCACACAGTAACCGAGATAAAGCGGTTCAAAGTTAGTTGTGTCATTCTATCAGAATGCTTCCCGAATCGTCAACTTGAAGTTCATTTATCTCGGTTCCCATAAGAGATATCAAAAAGTTGTCAACTAATAAAATATTTATCATAATATCACAAACATTTTATCAGTTGATTATTCTTTCATATCTTTCACGAGGACCCAGATAAATTGGCTCAGAGTTAGCTACCCAATTCTCATTTTCAGA</canonical_amplicon>
		<polymorphic_amplicon>ACTTTGACTTTTTCTATCGTTTTTTGGTAACCCGTCCCAATTCATGCCCAATAATCTCGGTTCCCATAAAAGATATCAAAAAATTGTCAACTAATAAAATATTTATCATAATATCACTAACATTTTATCAGTTAAAACAGTTTTGATATCTCACACAGTAACCGAGATAAAGCGGTTCAAAGTTAGTTGTGTCATTCTATCAGAATGCTTCCCGAATCGTCAACTTGAAGTTCATTTATCTCGGTTCCCATAAGAGATATCAAAAAGTTGTCAACTAATAAAATATTTATCATAATATCACAAACATTTTATCAGTTGATTATTCTTTSATATCTTTCACGAGGACCCAGATAAATTGGCTCAGAGTTAGCTACCCAATTCTCATTTTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28880</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>91781</contig_pos>
        <strand></strand>
        <context>cacgaggacc[C/A]agataaattg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TCACAAACATTTTATCAGTTGATTATTCTTTCATATCTTTCACGAGGACC</left_flank>
        <right_flank>AGATAAATTGGCTCAGAGTTAGCTACCCAATTCTCATTTTCAGAAATTCC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCAACAACAAAGGATGGTACGATCATGAGATTGTGAAAACTCAACCATTCAATTTGCCACTTGAGAGGTTCAAAATTAAAGCTAGTGAGTTTTTTCTTTAAAGTCCAAAACCATGAAAATCCAAAAATTACTGTTTCATGGGAAAAATAATACTTTGACTTTTTCTATCGTTTTTTGGTAACCCGTCCCAATTCATGCCCAATAATCTCGGTTCCCATAAAAGATATCAAAAAATTGTCAACTAATAAAATATTTATCATAATATCACTAACATTTTATCAGTTAAAACAGTTTTGATATCTCACACAGTAACCGAGATAAAGCGGTTCAAAGTTAGTTGTGTCATTCTATCAGAATGCTTCCCGAATCGTCAACTTGAAGTTCATTTATCTCGGTTCCCATAAGAGATATCAAAAAGTTGTCAACTAATAAAATATTTATCATAATATCACAAACATTTTATCAGTTGATTATTCTTTCATATCTTTCACGAGGACCCAGATAAATTGGCTCAGAGTTAGCTACCCAATTCTCATTTTCAGAAATTCCAAATCTTAAAATCATAGTCTTGAAAAACTAATTTTCTAGACGAGGACATCCTATTCCGTATTGTGAACGGTGGTGTGGCTCAGGAGTTGATGTTATACGTCGATGGACATTCGATGACCGTAGTTGCAGCCGATGGAGATGAAGTTGTTCCAATGCAGGTTGGTTGGGAATTGAAAGTTTGAACAAGCAATCTTGCAACAAAATCCAATCTCCTAGCTTAATTTTGAAGCAAGTTAGACCGTTATTCGCTCCGAGGGCGCGGTCGGCGGGAGGTGGTGAGCGGCGAGCGCGACAGACATGCGCCTCCACACTGTCACGCGCTCTGTTCATCACCTCTCGCTGACCACGTCCTGGCTTATAACTCGCTTCAAAATAGAGCTAGAAACATGATTTTTGTTGCAAAATAAAGAGTACAGTGTGTTAATACGTTTACATAACGACTTTCTACTG</canonical>
            <polymorphic>CTCAACAACAAAGGATGGTACGATCATGAGATTGTGAAAACTCAACCATTCAATTTGCCACTTGAGAGGTTCAAAATTAAAGCTAGTGAGTTTTTTCTTTAAAGTCCAAAACCATGAAAATCCAAAAATTACTGTTTCATGGGAAAAATAATACTTTGACTTTTTCTATCGTTTTTTGGTAACCCGTCCCAATTCATGCCCAATAATCTCGGTTCCCATAAAAGATATCAAAAAATTGTCAACTAATAAAATATTTATCATAATATCACTAACATTTTATCAGTTAAAACAGTTTTGATATCTCACACAGTAACCGAGATAAAGCGGTTCAAAGTTAGTTGTGTCATTCTATCAGAATGCTTCCCGAATCGTCAACTTGAAGTTCATTTATCTCGGTTCCCATAAGAGATATCAAAAAGTTGTCAACTAATAAAATATTTATCATAATATCACAAACATTTTATCAGTTGATTATTCTTTCATATCTTTCACGAGGACCMAGATAAATTGGCTCAGAGTTAGCTACCCAATTCTCATTTTCAGAAATTCCAAATCTTAAAATCATAGTCTTGAAAAACTAATTTTCTAGACGAGGACATCCTATTCCGTATTGTGAACGGTGGTGTGGCTCAGGAGTTGATGTTATACGTCGATGGACATTCGATGACCGTAGTTGCAGCCGATGGAGATGAAGTTGTTCCAATGCAGGTTGGTTGGGAATTGAAAGTTTGAACAAGCAATCTTGCAACAAAATCCAATCTCCTAGCTTAATTTTGAAGCAAGTTAGACCGTTATTCGCTCCGAGGGCGCGGTCGGCGGGAGGTGGTGAGCGGCGAGCGCGACAGACATGCGCCTCCACACTGTCACGCGCTCTGTTCATCACCTCTCGCTGACCACGTCCTGGCTTATAACTCGCTTCAAAATAGAGCTAGAAACATGATTTTTGTTGCAAAATAAAGAGTACAGTGTGTTAATACGTTTACATAACGACTTTCTACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>503 213 184 100</canonical_bands>
                <polymorphic_bands>603 213 184</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTTGACTTTTTCTATCGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTGGAATTTCTGAAAATGAG</pcr_primer_p2>
		<pcr_amplicon_size>402</pcr_amplicon_size>
		<canonical_amplicon>ACTTTGACTTTTTCTATCGTTTTTTGGTAACCCGTCCCAATTCATGCCCAATAATCTCGGTTCCCATAAAAGATATCAAAAAATTGTCAACTAATAAAATATTTATCATAATATCACTAACATTTTATCAGTTAAAACAGTTTTGATATCTCACACAGTAACCGAGATAAAGCGGTTCAAAGTTAGTTGTGTCATTCTATCAGAATGCTTCCCGAATCGTCAACTTGAAGTTCATTTATCTCGGTTCCCATAAGAGATATCAAAAAGTTGTCAACTAATAAAATATTTATCATAATATCACAAACATTTTATCAGTTGATTATTCTTTCATATCTTTCACGAGGACCCAGATAAATTGGCTCAGAGTTAGCTACCCAATTCTCATTTTCAGAAATTCCAAAT</canonical_amplicon>
		<polymorphic_amplicon>ACTTTGACTTTTTCTATCGTTTTTTGGTAACCCGTCCCAATTCATGCCCAATAATCTCGGTTCCCATAAAAGATATCAAAAAATTGTCAACTAATAAAATATTTATCATAATATCACTAACATTTTATCAGTTAAAACAGTTTTGATATCTCACACAGTAACCGAGATAAAGCGGTTCAAAGTTAGTTGTGTCATTCTATCAGAATGCTTCCCGAATCGTCAACTTGAAGTTCATTTATCTCGGTTCCCATAAGAGATATCAAAAAGTTGTCAACTAATAAAATATTTATCATAATATCACAAACATTTTATCAGTTGATTATTCTTTCATATCTTTCACGAGGACCMAGATAAATTGGCTCAGAGTTAGCTACCCAATTCTCATTTTCAGAAATTCCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28881</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>92050</contig_pos>
        <strand></strand>
        <context>tctcctagct[T/C]aattttgaag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATTGAAAGTTTGAACAAGCAATCTTGCAACAAAATCCAATCTCCTAGCT</left_flank>
        <right_flank>AATTTTGAAGCAAGTTAGACCGTTATTCGCTCCGAGGGCGCGGTCGGCGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACATTTTATCAGTTAAAACAGTTTTGATATCTCACACAGTAACCGAGATAAAGCGGTTCAAAGTTAGTTGTGTCATTCTATCAGAATGCTTCCCGAATCGTCAACTTGAAGTTCATTTATCTCGGTTCCCATAAGAGATATCAAAAAGTTGTCAACTAATAAAATATTTATCATAATATCACAAACATTTTATCAGTTGATTATTCTTTCATATCTTTCACGAGGACCCAGATAAATTGGCTCAGAGTTAGCTACCCAATTCTCATTTTCAGAAATTCCAAATCTTAAAATCATAGTCTTGAAAAACTAATTTTCTAGACGAGGACATCCTATTCCGTATTGTGAACGGTGGTGTGGCTCAGGAGTTGATGTTATACGTCGATGGACATTCGATGACCGTAGTTGCAGCCGATGGAGATGAAGTTGTTCCAATGCAGGTTGGTTGGGAATTGAAAGTTTGAACAAGCAATCTTGCAACAAAATCCAATCTCCTAGCTTAATTTTGAAGCAAGTTAGACCGTTATTCGCTCCGAGGGCGCGGTCGGCGGGAGGTGGTGAGCGGCGAGCGCGACAGACATGCGCCTCCACACTGTCACGCGCTCTGTTCATCACCTCTCGCTGACCACGTCCTGGCTTATAACTCGCTTCAAAATAGAGCTAGAAACATGATTTTTGTTGCAAAATAAAGAGTACAGTGTGTTAATACGTTTACATAACGACTTTCTACTGATAAAGTCAAAAATTACTTTTTAAATTTTTTTCAGTGAAAATTGGTCAACTTTGAAATAAAAAAAACAGTTCAGAATTTTTCAATTTGTCCGAAAATTTCAGAATATACCAAACAAAACTAGAGCTTCAATTTTGTAGTTGACAACTTTTTTGTAGCTCTTTTAATTTTTGAGATACGCGCCTTTAAAGGTGGAAGCCGGTAGAGGTATTTTTAAATGCGCGTATCTCAAAAACTACGGTAGGTAGAAAAAAGTTGTCAATTACAAAAA</canonical>
            <polymorphic>TAACATTTTATCAGTTAAAACAGTTTTGATATCTCACACAGTAACCGAGATAAAGCGGTTCAAAGTTAGTTGTGTCATTCTATCAGAATGCTTCCCGAATCGTCAACTTGAAGTTCATTTATCTCGGTTCCCATAAGAGATATCAAAAAGTTGTCAACTAATAAAATATTTATCATAATATCACAAACATTTTATCAGTTGATTATTCTTTCATATCTTTCACGAGGACCCAGATAAATTGGCTCAGAGTTAGCTACCCAATTCTCATTTTCAGAAATTCCAAATCTTAAAATCATAGTCTTGAAAAACTAATTTTCTAGACGAGGACATCCTATTCCGTATTGTGAACGGTGGTGTGGCTCAGGAGTTGATGTTATACGTCGATGGACATTCGATGACCGTAGTTGCAGCCGATGGAGATGAAGTTGTTCCAATGCAGGTTGGTTGGGAATTGAAAGTTTGAACAAGCAATCTTGCAACAAAATCCAATCTCCTAGCTYAATTTTGAAGCAAGTTAGACCGTTATTCGCTCCGAGGGCGCGGTCGGCGGGAGGTGGTGAGCGGCGAGCGCGACAGACATGCGCCTCCACACTGTCACGCGCTCTGTTCATCACCTCTCGCTGACCACGTCCTGGCTTATAACTCGCTTCAAAATAGAGCTAGAAACATGATTTTTGTTGCAAAATAAAGAGTACAGTGTGTTAATACGTTTACATAACGACTTTCTACTGATAAAGTCAAAAATTACTTTTTAAATTTTTTTCAGTGAAAATTGGTCAACTTTGAAATAAAAAAAACAGTTCAGAATTTTTCAATTTGTCCGAAAATTTCAGAATATACCAAACAAAACTAGAGCTTCAATTTTGTAGTTGACAACTTTTTTGTAGCTCTTTTAATTTTTGAGATACGCGCCTTTAAAGGTGGAAGCCGGTAGAGGTATTTTTAAATGCGCGTATCTCAAAAACTACGGTAGGTAGAAAAAAGTTGTCAATTACAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>272 212 203 141 57 50 28 22 15</canonical_bands>
                <polymorphic_bands>415 272 141 57 50 28 22 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGAATTGAAAGTTTGAACA</pcr_primer_p1>
		<pcr_primer_p2>AAACGTATTAACACACTGTACTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>266</pcr_amplicon_size>
		<canonical_amplicon>GGGAATTGAAAGTTTGAACAAGCAATCTTGCAACAAAATCCAATCTCCTAGCTTAATTTTGAAGCAAGTTAGACCGTTATTCGCTCCGAGGGCGCGGTCGGCGGGAGGTGGTGAGCGGCGAGCGCGACAGACATGCGCCTCCACACTGTCACGCGCTCTGTTCATCACCTCTCGCTGACCACGTCCTGGCTTATAACTCGCTTCAAAATAGAGCTAGAAACATGATTTTTGTTGCAAAATAAAGAGTACAGTGTGTTAATACGTTT</canonical_amplicon>
		<polymorphic_amplicon>GGGAATTGAAAGTTTGAACAAGCAATCTTGCAACAAAATCCAATCTCCTAGCTYAATTTTGAAGCAAGTTAGACCGTTATTCGCTCCGAGGGCGCGGTCGGCGGGAGGTGGTGAGCGGCGAGCGCGACAGACATGCGCCTCCACACTGTCACGCGCTCTGTTCATCACCTCTCGCTGACCACGTCCTGGCTTATAACTCGCTTCAAAATAGAGCTAGAAACATGATTTTTGTTGCAAAATAAAGAGTACAGTGTGTTAATACGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28882</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>92072</contig_pos>
        <strand></strand>
        <context>aagttagacc[G/C]ttwttcgctc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TCTTGCAACAAAATCCAATCTCCTAGCTTAATTTTGAAGCAAGTTAGACC</left_flank>
        <right_flank>TTATTCGCTCCGAGGGCGCGGTCGGCGGGAGGTGGTGAGCGGCGAGCGCG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTGATATCTCACACAGTAACCGAGATAAAGCGGTTCAAAGTTAGTTGTGTCATTCTATCAGAATGCTTCCCGAATCGTCAACTTGAAGTTCATTTATCTCGGTTCCCATAAGAGATATCAAAAAGTTGTCAACTAATAAAATATTTATCATAATATCACAAACATTTTATCAGTTGATTATTCTTTCATATCTTTCACGAGGACCCAGATAAATTGGCTCAGAGTTAGCTACCCAATTCTCATTTTCAGAAATTCCAAATCTTAAAATCATAGTCTTGAAAAACTAATTTTCTAGACGAGGACATCCTATTCCGTATTGTGAACGGTGGTGTGGCTCAGGAGTTGATGTTATACGTCGATGGACATTCGATGACCGTAGTTGCAGCCGATGGAGATGAAGTTGTTCCAATGCAGGTTGGTTGGGAATTGAAAGTTTGAACAAGCAATCTTGCAACAAAATCCAATCTCCTAGCTTAATTTTGAAGCAAGTTAGACCGTTATTCGCTCCGAGGGCGCGGTCGGCGGGAGGTGGTGAGCGGCGAGCGCGACAGACATGCGCCTCCACACTGTCACGCGCTCTGTTCATCACCTCTCGCTGACCACGTCCTGGCTTATAACTCGCTTCAAAATAGAGCTAGAAACATGATTTTTGTTGCAAAATAAAGAGTACAGTGTGTTAATACGTTTACATAACGACTTTCTACTGATAAAGTCAAAAATTACTTTTTAAATTTTTTTCAGTGAAAATTGGTCAACTTTGAAATAAAAAAAACAGTTCAGAATTTTTCAATTTGTCCGAAAATTTCAGAATATACCAAACAAAACTAGAGCTTCAATTTTGTAGTTGACAACTTTTTTGTAGCTCTTTTAATTTTTGAGATACGCGCCTTTAAAGGTGGAAGCCGGTAGAGGTATTTTTAAATGCGCGTATCTCAAAAACTACGGTAGGTAGAAAAAAGTTGTCAATTACAAAAATAAAGCTCGATTTTTGTTTAGT</canonical>
            <polymorphic>GTTTTGATATCTCACACAGTAACCGAGATAAAGCGGTTCAAAGTTAGTTGTGTCATTCTATCAGAATGCTTCCCGAATCGTCAACTTGAAGTTCATTTATCTCGGTTCCCATAAGAGATATCAAAAAGTTGTCAACTAATAAAATATTTATCATAATATCACAAACATTTTATCAGTTGATTATTCTTTCATATCTTTCACGAGGACCCAGATAAATTGGCTCAGAGTTAGCTACCCAATTCTCATTTTCAGAAATTCCAAATCTTAAAATCATAGTCTTGAAAAACTAATTTTCTAGACGAGGACATCCTATTCCGTATTGTGAACGGTGGTGTGGCTCAGGAGTTGATGTTATACGTCGATGGACATTCGATGACCGTAGTTGCAGCCGATGGAGATGAAGTTGTTCCAATGCAGGTTGGTTGGGAATTGAAAGTTTGAACAAGCAATCTTGCAACAAAATCCAATCTCCTAGCTTAATTTTGAAGCAAGTTAGACCSTTATTCGCTCCGAGGGCGCGGTCGGCGGGAGGTGGTGAGCGGCGAGCGCGACAGACATGCGCCTCCACACTGTCACGCGCTCTGTTCATCACCTCTCGCTGACCACGTCCTGGCTTATAACTCGCTTCAAAATAGAGCTAGAAACATGATTTTTGTTGCAAAATAAAGAGTACAGTGTGTTAATACGTTTACATAACGACTTTCTACTGATAAAGTCAAAAATTACTTTTTAAATTTTTTTCAGTGAAAATTGGTCAACTTTGAAATAAAAAAAACAGTTCAGAATTTTTCAATTTGTCCGAAAATTTCAGAATATACCAAACAAAACTAGAGCTTCAATTTTGTAGTTGACAACTTTTTTGTAGCTCTTTTAATTTTTGAGATACGCGCCTTTAAAGGTGGAAGCCGGTAGAGGTATTTTTAAATGCGCGTATCTCAAAAACTACGGTAGGTAGAAAAAAGTTGTCAATTACAAAAATAAAGCTCGATTTTTGTTTAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>310 170 121 103 103 72 53 50 18</canonical_bands>
                <polymorphic_bands>310 193 170 103 103 53 50 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGAATTGAAAGTTTGAACA</pcr_primer_p1>
		<pcr_primer_p2>AAACGTATTAACACACTGTACTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>266</pcr_amplicon_size>
		<canonical_amplicon>GGGAATTGAAAGTTTGAACAAGCAATCTTGCAACAAAATCCAATCTCCTAGCTTAATTTTGAAGCAAGTTAGACCGTTATTCGCTCCGAGGGCGCGGTCGGCGGGAGGTGGTGAGCGGCGAGCGCGACAGACATGCGCCTCCACACTGTCACGCGCTCTGTTCATCACCTCTCGCTGACCACGTCCTGGCTTATAACTCGCTTCAAAATAGAGCTAGAAACATGATTTTTGTTGCAAAATAAAGAGTACAGTGTGTTAATACGTTT</canonical_amplicon>
		<polymorphic_amplicon>GGGAATTGAAAGTTTGAACAAGCAATCTTGCAACAAAATCCAATCTCCTAGCTTAATTTTGAAGCAAGTTAGACCSTTATTCGCTCCGAGGGCGCGGTCGGCGGGAGGTGGTGAGCGGCGAGCGCGACAGACATGCGCCTCCACACTGTCACGCGCTCTGTTCATCACCTCTCGCTGACCACGTCCTGGCTTATAACTCGCTTCAAAATAGAGCTAGAAACATGATTTTTGTTGCAAAATAAAGAGTACAGTGTGTTAATACGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28883</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>92075</contig_pos>
        <strand></strand>
        <context>ttagaccstt[A/T]ttcgctccga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGCAACAAAATCCAATCTCCTAGCTTAATTTTGAAGCAAGTTAGACCGTT</left_flank>
        <right_flank>TTCGCTCCGAGGGCGCGGTCGGCGGGAGGTGGTGAGCGGCGAGCGCGACA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGATATCTCACACAGTAACCGAGATAAAGCGGTTCAAAGTTAGTTGTGTCATTCTATCAGAATGCTTCCCGAATCGTCAACTTGAAGTTCATTTATCTCGGTTCCCATAAGAGATATCAAAAAGTTGTCAACTAATAAAATATTTATCATAATATCACAAACATTTTATCAGTTGATTATTCTTTCATATCTTTCACGAGGACCCAGATAAATTGGCTCAGAGTTAGCTACCCAATTCTCATTTTCAGAAATTCCAAATCTTAAAATCATAGTCTTGAAAAACTAATTTTCTAGACGAGGACATCCTATTCCGTATTGTGAACGGTGGTGTGGCTCAGGAGTTGATGTTATACGTCGATGGACATTCGATGACCGTAGTTGCAGCCGATGGAGATGAAGTTGTTCCAATGCAGGTTGGTTGGGAATTGAAAGTTTGAACAAGCAATCTTGCAACAAAATCCAATCTCCTAGCTTAATTTTGAAGCAAGTTAGACCGTTATTCGCTCCGAGGGCGCGGTCGGCGGGAGGTGGTGAGCGGCGAGCGCGACAGACATGCGCCTCCACACTGTCACGCGCTCTGTTCATCACCTCTCGCTGACCACGTCCTGGCTTATAACTCGCTTCAAAATAGAGCTAGAAACATGATTTTTGTTGCAAAATAAAGAGTACAGTGTGTTAATACGTTTACATAACGACTTTCTACTGATAAAGTCAAAAATTACTTTTTAAATTTTTTTCAGTGAAAATTGGTCAACTTTGAAATAAAAAAAACAGTTCAGAATTTTTCAATTTGTCCGAAAATTTCAGAATATACCAAACAAAACTAGAGCTTCAATTTTGTAGTTGACAACTTTTTTGTAGCTCTTTTAATTTTTGAGATACGCGCCTTTAAAGGTGGAAGCCGGTAGAGGTATTTTTAAATGCGCGTATCTCAAAAACTACGGTAGGTAGAAAAAAGTTGTCAATTACAAAAATAAAGCTCGATTTTTGTTTAGTATA</canonical>
            <polymorphic>TTGATATCTCACACAGTAACCGAGATAAAGCGGTTCAAAGTTAGTTGTGTCATTCTATCAGAATGCTTCCCGAATCGTCAACTTGAAGTTCATTTATCTCGGTTCCCATAAGAGATATCAAAAAGTTGTCAACTAATAAAATATTTATCATAATATCACAAACATTTTATCAGTTGATTATTCTTTCATATCTTTCACGAGGACCCAGATAAATTGGCTCAGAGTTAGCTACCCAATTCTCATTTTCAGAAATTCCAAATCTTAAAATCATAGTCTTGAAAAACTAATTTTCTAGACGAGGACATCCTATTCCGTATTGTGAACGGTGGTGTGGCTCAGGAGTTGATGTTATACGTCGATGGACATTCGATGACCGTAGTTGCAGCCGATGGAGATGAAGTTGTTCCAATGCAGGTTGGTTGGGAATTGAAAGTTTGAACAAGCAATCTTGCAACAAAATCCAATCTCCTAGCTTAATTTTGAAGCAAGTTAGACCGTTWTTCGCTCCGAGGGCGCGGTCGGCGGGAGGTGGTGAGCGGCGAGCGCGACAGACATGCGCCTCCACACTGTCACGCGCTCTGTTCATCACCTCTCGCTGACCACGTCCTGGCTTATAACTCGCTTCAAAATAGAGCTAGAAACATGATTTTTGTTGCAAAATAAAGAGTACAGTGTGTTAATACGTTTACATAACGACTTTCTACTGATAAAGTCAAAAATTACTTTTTAAATTTTTTTCAGTGAAAATTGGTCAACTTTGAAATAAAAAAAACAGTTCAGAATTTTTCAATTTGTCCGAAAATTTCAGAATATACCAAACAAAACTAGAGCTTCAATTTTGTAGTTGACAACTTTTTTGTAGCTCTTTTAATTTTTGAGATACGCGCCTTTAAAGGTGGAAGCCGGTAGAGGTATTTTTAAATGCGCGTATCTCAAAAACTACGGTAGGTAGAAAAAAGTTGTCAATTACAAAAATAAAGCTCGATTTTTGTTTAGTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGAATTGAAAGTTTGAACA</pcr_primer_p1>
		<pcr_primer_p2>AAACGTATTAACACACTGTACTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>266</pcr_amplicon_size>
		<canonical_amplicon>GGGAATTGAAAGTTTGAACAAGCAATCTTGCAACAAAATCCAATCTCCTAGCTTAATTTTGAAGCAAGTTAGACCGTTATTCGCTCCGAGGGCGCGGTCGGCGGGAGGTGGTGAGCGGCGAGCGCGACAGACATGCGCCTCCACACTGTCACGCGCTCTGTTCATCACCTCTCGCTGACCACGTCCTGGCTTATAACTCGCTTCAAAATAGAGCTAGAAACATGATTTTTGTTGCAAAATAAAGAGTACAGTGTGTTAATACGTTT</canonical_amplicon>
		<polymorphic_amplicon>GGGAATTGAAAGTTTGAACAAGCAATCTTGCAACAAAATCCAATCTCCTAGCTTAATTTTGAAGCAAGTTAGACCGTTWTTCGCTCCGAGGGCGCGGTCGGCGGGAGGTGGTGAGCGGCGAGCGCGACAGACATGCGCCTCCACACTGTCACGCGCTCTGTTCATCACCTCTCGCTGACCACGTCCTGGCTTATAACTCGCTTCAAAATAGAGCTAGAAACATGATTTTTGTTGCAAAATAAAGAGTACAGTGTGTTAATACGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28884</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>105493</contig_pos>
        <strand>-</strand>
        <context>CAGCTGTTGT[A/G/T/C]CCAAATTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G/T/C</alleles>
        <left_flank>TTCCACACTTGATGAGCTCTTTTCTTATATTATTTTCTTCCAGCTGTTGT</left_flank>
        <right_flank>CCAAATTTTTGGATTGTCTTCCAAAGAATTTTATGGCATTTATTGCTAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGCTCATTCTGAAGCTCAGAAATTACGAATTCTCGTTTTTAGCTATATTTGAGTTCAGCACACTAAGAGCTTTAAAGTGATCCTGAACACGCTATGATTCGGTGAGATTCGGAATTTCGGGTGCGTCGCGGTCGTGCGTCGCGTGTTTTTGGCGAAAATGAAAATTAACCAATTTCGATCGTGTTTGGGATTATTTTGAAGCTCACAAGCTCACAAATCTGAAAATTCTAGTCTTGAGTTGATTGGAACATTTTTGAACGGTTTATGGTCCAAACAAAAATCGGGAGTCTCCGATCGCGAAGCAAGTTATACCTTTAAAAAAAGAAAGAAACTCACATTTCAATGGTTTATTCCCATTGTAGGCTCCACATCCCCACCATCCACTAACAATCGGAATTTTGTCAAAACTACCGTAATCTGATTGTTGATTTTGAGCACAGAATGCAATTCCACACTTGATGAGCTCTTTTCTTATATTATTTTCTTCCAGCTGTTGTTCCAAATTTTTGGATTGTCTTCCAAAGAATTTTATGGCATTTATTGCTAGAGCTTCTGTTTGAAGACGTCCGAATTCATCACGATACAAGGGATTGTTTGAGAGGGCATCCAATGGTTCCATAATCTTCCATTTCAGTTTTCCGGCTGAAAATTTTCAGAAAAATGTTTTTTTTTCGGATTTTCGCAAACGTGACGTTTTAGAACCGTTCTAAAACGTCCGGTTGCCAAATTCAATCAACTTACAGTAACCCTGATAGGAACTAAAAACTTGTGCGCCAACAATCGAAATCGCTTCATCCGGTTCCATTCGATCAAATAGCAACATGGAAACTATCATTTCTGGGCACATCAAAAAGCGAATTTCTTCCTGAAAAATATATATAATAGTTTTGAGATGTCATCAAGTGATTTGCCCAGGTTAAGAGCTTCAAAATGAGTCCAAACTATTAGGTTGGCGGGAAAGTCTTTGTCACTTTTTCAATAGTTTATTTCTCAAAGAA</canonical>
            <polymorphic>TGAGCTCATTCTGAAGCTCAGAAATTACGAATTCTCGTTTTTAGCTATATTTGAGTTCAGCACACTAAGAGCTTTAAAGTGATCCTGAACACGCTATGATTCGGTGAGATTCGGAATTTCGGGTGCGTCGCGGTCGTGCGTCGCGTGTTTTTGGCGAAAATGAAAATTAACCAATTTCGATCGTGTTTGGGATTATTTTGAAGCTCACAAGCTCACAAATCTGAAAATTCTAGTCTTGAGTTGATTGGAACATTTTTGAACGGTTTATGGTCCAAACAAAAATCGGGAGTCTCCGATCGCGAAGCAAGTTATACCTTTAAAAAAAGAAAGAAACTCACATTTCAATGGTTTATTCCCATTGTAGGCTCCACATCCCCACCATCCACTAACAATCGGAATTTTGTCAAAACTACCGTAATCTGATTGTTGATTTTGAGCACAGAATGCAATTCCACACTTGATGAGCTCTTTTCTTATATTATTTTCTTCCAGCTGTTGTRCCAAATTTTTGGATTGTCTTCCAAAGAATTTTATGGCATTTATTGCTAGAGCTTCTGTTTGAAGACGTCCGAATTCATCACGATACAAGGGATTGTTTGAGAGGGCATCCAATGGTTCCATAATCTTCCATTTCAGTTTTCCGGCTGAAAATTTTCAGAAAAATGTTTTTTTTTCGGATTTTCGCAAACGTGACGTTTTAGAACCGTTCTAAAACGTCCGGTTGCCAAATTCAATCAACTTACAGTAACCCTGATAGGAACTAAAAACTTGTGCGCCAACAATCGAAATCGCTTCATCCGGTTCCATTCGATCAAATAGCAACATGGAAACTATCATTTCTGGGCACATCAAAAAGCGAATTTCTTCCTGAAAAATATATATAATAGTTTTGAGATGTCATCAAGTGATTTGCCCAGGTTAAGAGCTTCAAAATGAGTCCAAACTATTAGGTTGGCGGGAAAGTCTTTGTCACTTTTTCAATAGTTTATTTCTCAAAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAAAGAAACTCACATTTCA</pcr_primer_p1>
		<pcr_primer_p2>ACGTCTTCAAACAGAAGCTCTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAAAGAAACTCACATTTCAATGGTTTATTCCCATTGTAGGCTCCACATCCCCACCATCCACTAACAATCGGAATTTTGTCAAAACTACCGTAATCTGATTGTTGATTTTGAGCACAGAATGCAATTCCACACTTGATGAGCTCTTTTCTTATATTATTTTCTTCCAGCTGTTGTTCCAAATTTTTGGATTGTCTTCCAAAGAATTTTATGGCATTTATTGCTAGAGCTTCTGTTTGAAGACGT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAAAGAAACTCACATTTCAATGGTTTATTCCCATTGTAGGCTCCACATCCCCACCATCCACTAACAATCGGAATTTTGTCAAAACTACCGTAATCTGATTGTTGATTTTGAGCACAGAATGCAATTCCACACTTGATGAGCTCTTTTCTTATATTATTTTCTTCCAGCTGTTGTRCCAAATTTTTGGATTGTCTTCCAAAGAATTTTATGGCATTTATTGCTAGAGCTTCTGTTTGAAGACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28885</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>105614</contig_pos>
        <strand>-</strand>
        <context>AATGGTTCCA[A/G/T/C]AATCTTCCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G/T/C</alleles>
        <left_flank>GAATTCATCACGATACAAGGGATTGTTTGAGAGGGCATCCAATGGTTCCA</left_flank>
        <right_flank>AATCTTCCATTTCAGTTTTCCGGCTGAAAATTTTCAGAAAAATGTTTTTT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGCGTCGCGGTCGTGCGTCGCGTGTTTTTGGCGAAAATGAAAATTAACCAATTTCGATCGTGTTTGGGATTATTTTGAAGCTCACAAGCTCACAAATCTGAAAATTCTAGTCTTGAGTTGATTGGAACATTTTTGAACGGTTTATGGTCCAAACAAAAATCGGGAGTCTCCGATCGCGAAGCAAGTTATACCTTTAAAAAAAGAAAGAAACTCACATTTCAATGGTTTATTCCCATTGTAGGCTCCACATCCCCACCATCCACTAACAATCGGAATTTTGTCAAAACTACCGTAATCTGATTGTTGATTTTGAGCACAGAATGCAATTCCACACTTGATGAGCTCTTTTCTTATATTATTTTCTTCCAGCTGTTGTTCCAAATTTTTGGATTGTCTTCCAAAGAATTTTATGGCATTTATTGCTAGAGCTTCTGTTTGAAGACGTCCGAATTCATCACGATACAAGGGATTGTTTGAGAGGGCATCCAATGGTTCCATAATCTTCCATTTCAGTTTTCCGGCTGAAAATTTTCAGAAAAATGTTTTTTTTTCGGATTTTCGCAAACGTGACGTTTTAGAACCGTTCTAAAACGTCCGGTTGCCAAATTCAATCAACTTACAGTAACCCTGATAGGAACTAAAAACTTGTGCGCCAACAATCGAAATCGCTTCATCCGGTTCCATTCGATCAAATAGCAACATGGAAACTATCATTTCTGGGCACATCAAAAAGCGAATTTCTTCCTGAAAAATATATATAATAGTTTTGAGATGTCATCAAGTGATTTGCCCAGGTTAAGAGCTTCAAAATGAGTCCAAACTATTAGGTTGGCGGGAAAGTCTTTGTCACTTTTTCAATAGTTTATTTCTCAAAGAAAAAATAACCGAATAATTAATTATATTGTCCATCATTATCAACAACATGTCTCCAACGTTCCCTCAATTTATGGATTCCATTGCGGTAGAATCCAGCCGGGCGTGAGGCAAAGTATTGTTTG</canonical>
            <polymorphic>GGTGCGTCGCGGTCGTGCGTCGCGTGTTTTTGGCGAAAATGAAAATTAACCAATTTCGATCGTGTTTGGGATTATTTTGAAGCTCACAAGCTCACAAATCTGAAAATTCTAGTCTTGAGTTGATTGGAACATTTTTGAACGGTTTATGGTCCAAACAAAAATCGGGAGTCTCCGATCGCGAAGCAAGTTATACCTTTAAAAAAAGAAAGAAACTCACATTTCAATGGTTTATTCCCATTGTAGGCTCCACATCCCCACCATCCACTAACAATCGGAATTTTGTCAAAACTACCGTAATCTGATTGTTGATTTTGAGCACAGAATGCAATTCCACACTTGATGAGCTCTTTTCTTATATTATTTTCTTCCAGCTGTTGTTCCAAATTTTTGGATTGTCTTCCAAAGAATTTTATGGCATTTATTGCTAGAGCTTCTGTTTGAAGACGTCCGAATTCATCACGATACAAGGGATTGTTTGAGAGGGCATCCAATGGTTCCARAATCTTCCATTTCAGTTTTCCGGCTGAAAATTTTCAGAAAAATGTTTTTTTTTCGGATTTTCGCAAACGTGACGTTTTAGAACCGTTCTAAAACGTCCGGTTGCCAAATTCAATCAACTTACAGTAACCCTGATAGGAACTAAAAACTTGTGCGCCAACAATCGAAATCGCTTCATCCGGTTCCATTCGATCAAATAGCAACATGGAAACTATCATTTCTGGGCACATCAAAAAGCGAATTTCTTCCTGAAAAATATATATAATAGTTTTGAGATGTCATCAAGTGATTTGCCCAGGTTAAGAGCTTCAAAATGAGTCCAAACTATTAGGTTGGCGGGAAAGTCTTTGTCACTTTTTCAATAGTTTATTTCTCAAAGAAAAAATAACCGAATAATTAATTATATTGTCCATCATTATCAACAACATGTCTCCAACGTTCCCTCAATTTATGGATTCCATTGCGGTAGAATCCAGCCGGGCGTGAGGCAAAGTATTGTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTATGGCATTTATTGCTAGAG</pcr_primer_p1>
		<pcr_primer_p2>GCACAAGTTTTTAGTTCCTATCA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTTATGGCATTTATTGCTAGAGCTTCTGTTTGAAGACGTCCGAATTCATCACGATACAAGGGATTGTTTGAGAGGGCATCCAATGGTTCCATAATCTTCCATTTCAGTTTTCCGGCTGAAAATTTTCAGAAAAATGTTTTTTTTTCGGATTTTCGCAAACGTGACGTTTTAGAACCGTTCTAAAACGTCCGGTTGCCAAATTCAATCAACTTACAGTAACCCTGATAGGAACTAAAAACTTGTGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTATGGCATTTATTGCTAGAGCTTCTGTTTGAAGACGTCCGAATTCATCACGATACAAGGGATTGTTTGAGAGGGCATCCAATGGTTCCARAATCTTCCATTTCAGTTTTCCGGCTGAAAATTTTCAGAAAAATGTTTTTTTTTCGGATTTTCGCAAACGTGACGTTTTAGAACCGTTCTAAAACGTCCGGTTGCCAAATTCAATCAACTTACAGTAACCCTGATAGGAACTAAAAACTTGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28886</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>105659</contig_pos>
        <strand>-</strand>
        <context>CAGAAAAATG[G/T]TTTTTTTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCCATAATCTTCCATTTCAGTTTTCCGGCTGAAAATTTTCAGAAAAATG</left_flank>
        <right_flank>TTTTTTTTCGGATTTTCGCAAACGTGACGTTTTAGAACCGTTCTAAAACG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAACCAATTTCGATCGTGTTTGGGATTATTTTGAAGCTCACAAGCTCACAAATCTGAAAATTCTAGTCTTGAGTTGATTGGAACATTTTTGAACGGTTTATGGTCCAAACAAAAATCGGGAGTCTCCGATCGCGAAGCAAGTTATACCTTTAAAAAAAGAAAGAAACTCACATTTCAATGGTTTATTCCCATTGTAGGCTCCACATCCCCACCATCCACTAACAATCGGAATTTTGTCAAAACTACCGTAATCTGATTGTTGATTTTGAGCACAGAATGCAATTCCACACTTGATGAGCTCTTTTCTTATATTATTTTCTTCCAGCTGTTGTTCCAAATTTTTGGATTGTCTTCCAAAGAATTTTATGGCATTTATTGCTAGAGCTTCTGTTTGAAGACGTCCGAATTCATCACGATACAAGGGATTGTTTGAGAGGGCATCCAATGGTTCCATAATCTTCCATTTCAGTTTTCCGGCTGAAAATTTTCAGAAAAATGTTTTTTTTTCGGATTTTCGCAAACGTGACGTTTTAGAACCGTTCTAAAACGTCCGGTTGCCAAATTCAATCAACTTACAGTAACCCTGATAGGAACTAAAAACTTGTGCGCCAACAATCGAAATCGCTTCATCCGGTTCCATTCGATCAAATAGCAACATGGAAACTATCATTTCTGGGCACATCAAAAAGCGAATTTCTTCCTGAAAAATATATATAATAGTTTTGAGATGTCATCAAGTGATTTGCCCAGGTTAAGAGCTTCAAAATGAGTCCAAACTATTAGGTTGGCGGGAAAGTCTTTGTCACTTTTTCAATAGTTTATTTCTCAAAGAAAAAATAACCGAATAATTAATTATATTGTCCATCATTATCAACAACATGTCTCCAACGTTCCCTCAATTTATGGATTCCATTGCGGTAGAATCCAGCCGGGCGTGAGGCAAAGTATTGTTTGAGTGCCGCTTCGACCGCTCCACGGGAATTGAAGCTTCTTCCTTCG</canonical>
            <polymorphic>TTAACCAATTTCGATCGTGTTTGGGATTATTTTGAAGCTCACAAGCTCACAAATCTGAAAATTCTAGTCTTGAGTTGATTGGAACATTTTTGAACGGTTTATGGTCCAAACAAAAATCGGGAGTCTCCGATCGCGAAGCAAGTTATACCTTTAAAAAAAGAAAGAAACTCACATTTCAATGGTTTATTCCCATTGTAGGCTCCACATCCCCACCATCCACTAACAATCGGAATTTTGTCAAAACTACCGTAATCTGATTGTTGATTTTGAGCACAGAATGCAATTCCACACTTGATGAGCTCTTTTCTTATATTATTTTCTTCCAGCTGTTGTTCCAAATTTTTGGATTGTCTTCCAAAGAATTTTATGGCATTTATTGCTAGAGCTTCTGTTTGAAGACGTCCGAATTCATCACGATACAAGGGATTGTTTGAGAGGGCATCCAATGGTTCCATAATCTTCCATTTCAGTTTTCCGGCTGAAAATTTTCAGAAAAATGKTTTTTTTTCGGATTTTCGCAAACGTGACGTTTTAGAACCGTTCTAAAACGTCCGGTTGCCAAATTCAATCAACTTACAGTAACCCTGATAGGAACTAAAAACTTGTGCGCCAACAATCGAAATCGCTTCATCCGGTTCCATTCGATCAAATAGCAACATGGAAACTATCATTTCTGGGCACATCAAAAAGCGAATTTCTTCCTGAAAAATATATATAATAGTTTTGAGATGTCATCAAGTGATTTGCCCAGGTTAAGAGCTTCAAAATGAGTCCAAACTATTAGGTTGGCGGGAAAGTCTTTGTCACTTTTTCAATAGTTTATTTCTCAAAGAAAAAATAACCGAATAATTAATTATATTGTCCATCATTATCAACAACATGTCTCCAACGTTCCCTCAATTTATGGATTCCATTGCGGTAGAATCCAGCCGGGCGTGAGGCAAAGTATTGTTTGAGTGCCGCTTCGACCGCTCCACGGGAATTGAAGCTTCTTCCTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTATGGCATTTATTGCTAGAG</pcr_primer_p1>
		<pcr_primer_p2>GCACAAGTTTTTAGTTCCTATCA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTTATGGCATTTATTGCTAGAGCTTCTGTTTGAAGACGTCCGAATTCATCACGATACAAGGGATTGTTTGAGAGGGCATCCAATGGTTCCATAATCTTCCATTTCAGTTTTCCGGCTGAAAATTTTCAGAAAAATGTTTTTTTTTCGGATTTTCGCAAACGTGACGTTTTAGAACCGTTCTAAAACGTCCGGTTGCCAAATTCAATCAACTTACAGTAACCCTGATAGGAACTAAAAACTTGTGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTATGGCATTTATTGCTAGAGCTTCTGTTTGAAGACGTCCGAATTCATCACGATACAAGGGATTGTTTGAGAGGGCATCCAATGGTTCCATAATCTTCCATTTCAGTTTTCCGGCTGAAAATTTTCAGAAAAATGKTTTTTTTTCGGATTTTCGCAAACGTGACGTTTTAGAACCGTTCTAAAACGTCCGGTTGCCAAATTCAATCAACTTACAGTAACCCTGATAGGAACTAAAAACTTGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28887</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>105681</contig_pos>
        <strand></strand>
        <context>ATTTTCGCAA[A/C]CGTGACGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCCGGCTGAAAATTTTCAGAAAAATGTTTTTTTTTCGGATTTTCGCAA</left_flank>
        <right_flank>CGTGACGTTTTAGAACCGTTCTAAAACGTCCGGTTGCCAAATTCAATCAA</right_flank>
        <qual_score>46</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGATTATTTTGAAGCTCACAAGCTCACAAATCTGAAAATTCTAGTCTTGAGTTGATTGGAACATTTTTGAACGGTTTATGGTCCAAACAAAAATCGGGAGTCTCCGATCGCGAAGCAAGTTATACCTTTAAAAAAAGAAAGAAACTCACATTTCAATGGTTTATTCCCATTGTAGGCTCCACATCCCCACCATCCACTAACAATCGGAATTTTGTCAAAACTACCGTAATCTGATTGTTGATTTTGAGCACAGAATGCAATTCCACACTTGATGAGCTCTTTTCTTATATTATTTTCTTCCAGCTGTTGTTCCAAATTTTTGGATTGTCTTCCAAAGAATTTTATGGCATTTATTGCTAGAGCTTCTGTTTGAAGACGTCCGAATTCATCACGATACAAGGGATTGTTTGAGAGGGCATCCAATGGTTCCATAATCTTCCATTTCAGTTTTCCGGCTGAAAATTTTCAGAAAAATGTTTTTTTTTCGGATTTTCGCAAACGTGACGTTTTAGAACCGTTCTAAAACGTCCGGTTGCCAAATTCAATCAACTTACAGTAACCCTGATAGGAACTAAAAACTTGTGCGCCAACAATCGAAATCGCTTCATCCGGTTCCATTCGATCAAATAGCAACATGGAAACTATCATTTCTGGGCACATCAAAAAGCGAATTTCTTCCTGAAAAATATATATAATAGTTTTGAGATGTCATCAAGTGATTTGCCCAGGTTAAGAGCTTCAAAATGAGTCCAAACTATTAGGTTGGCGGGAAAGTCTTTGTCACTTTTTCAATAGTTTATTTCTCAAAGAAAAAATAACCGAATAATTAATTATATTGTCCATCATTATCAACAACATGTCTCCAACGTTCCCTCAATTTATGGATTCCATTGCGGTAGAATCCAGCCGGGCGTGAGGCAAAGTATTGTTTGAGTGCCGCTTCGACCGCTCCACGGGAATTGAAGCTTCTTCCTTCGAAGGCACGTGTCATATCGCCAA</canonical>
            <polymorphic>GGGATTATTTTGAAGCTCACAAGCTCACAAATCTGAAAATTCTAGTCTTGAGTTGATTGGAACATTTTTGAACGGTTTATGGTCCAAACAAAAATCGGGAGTCTCCGATCGCGAAGCAAGTTATACCTTTAAAAAAAGAAAGAAACTCACATTTCAATGGTTTATTCCCATTGTAGGCTCCACATCCCCACCATCCACTAACAATCGGAATTTTGTCAAAACTACCGTAATCTGATTGTTGATTTTGAGCACAGAATGCAATTCCACACTTGATGAGCTCTTTTCTTATATTATTTTCTTCCAGCTGTTGTTCCAAATTTTTGGATTGTCTTCCAAAGAATTTTATGGCATTTATTGCTAGAGCTTCTGTTTGAAGACGTCCGAATTCATCACGATACAAGGGATTGTTTGAGAGGGCATCCAATGGTTCCATAATCTTCCATTTCAGTTTTCCGGCTGAAAATTTTCAGAAAAATGTTTTTTTTTCGGATTTTCGCAAMCGTGACGTTTTAGAACCGTTCTAAAACGTCCGGTTGCCAAATTCAATCAACTTACAGTAACCCTGATAGGAACTAAAAACTTGTGCGCCAACAATCGAAATCGCTTCATCCGGTTCCATTCGATCAAATAGCAACATGGAAACTATCATTTCTGGGCACATCAAAAAGCGAATTTCTTCCTGAAAAATATATATAATAGTTTTGAGATGTCATCAAGTGATTTGCCCAGGTTAAGAGCTTCAAAATGAGTCCAAACTATTAGGTTGGCGGGAAAGTCTTTGTCACTTTTTCAATAGTTTATTTCTCAAAGAAAAAATAACCGAATAATTAATTATATTGTCCATCATTATCAACAACATGTCTCCAACGTTCCCTCAATTTATGGATTCCATTGCGGTAGAATCCAGCCGGGCGTGAGGCAAAGTATTGTTTGAGTGCCGCTTCGACCGCTCCACGGGAATTGAAGCTTCTTCCTTCGAAGGCACGTGTCATATCGCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>377 341 123 117 21 16 5</canonical_bands>
                <polymorphic_bands>377 341 128 117 21 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTATGGCATTTATTGCTAGAG</pcr_primer_p1>
		<pcr_primer_p2>GCACAAGTTTTTAGTTCCTATCA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTTATGGCATTTATTGCTAGAGCTTCTGTTTGAAGACGTCCGAATTCATCACGATACAAGGGATTGTTTGAGAGGGCATCCAATGGTTCCATAATCTTCCATTTCAGTTTTCCGGCTGAAAATTTTCAGAAAAATGTTTTTTTTTCGGATTTTCGCAAACGTGACGTTTTAGAACCGTTCTAAAACGTCCGGTTGCCAAATTCAATCAACTTACAGTAACCCTGATAGGAACTAAAAACTTGTGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTATGGCATTTATTGCTAGAGCTTCTGTTTGAAGACGTCCGAATTCATCACGATACAAGGGATTGTTTGAGAGGGCATCCAATGGTTCCATAATCTTCCATTTCAGTTTTCCGGCTGAAAATTTTCAGAAAAATGTTTTTTTTTCGGATTTTCGCAAMCGTGACGTTTTAGAACCGTTCTAAAACGTCCGGTTGCCAAATTCAATCAACTTACAGTAACCCTGATAGGAACTAAAAACTTGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28888</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>105786</contig_pos>
        <strand>-</strand>
        <context>TCGAAATCGC[A/G/T/C]TCATCCGGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G/T/C</alleles>
        <left_flank>CAGTAACCCTGATAGGAACTAAAAACTTGTGCGCCAACAATCGAAATCGC</left_flank>
        <right_flank>TCATCCGGTTCCATTCGATCAAATAGCAACATGGAAACTATCATTTCTGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATCGCGAAGCAAGTTATACCTTTAAAAAAAGAAAGAAACTCACATTTCAATGGTTTATTCCCATTGTAGGCTCCACATCCCCACCATCCACTAACAATCGGAATTTTGTCAAAACTACCGTAATCTGATTGTTGATTTTGAGCACAGAATGCAATTCCACACTTGATGAGCTCTTTTCTTATATTATTTTCTTCCAGCTGTTGTTCCAAATTTTTGGATTGTCTTCCAAAGAATTTTATGGCATTTATTGCTAGAGCTTCTGTTTGAAGACGTCCGAATTCATCACGATACAAGGGATTGTTTGAGAGGGCATCCAATGGTTCCATAATCTTCCATTTCAGTTTTCCGGCTGAAAATTTTCAGAAAAATGTTTTTTTTTCGGATTTTCGCAAACGTGACGTTTTAGAACCGTTCTAAAACGTCCGGTTGCCAAATTCAATCAACTTACAGTAACCCTGATAGGAACTAAAAACTTGTGCGCCAACAATCGAAATCGCTTCATCCGGTTCCATTCGATCAAATAGCAACATGGAAACTATCATTTCTGGGCACATCAAAAAGCGAATTTCTTCCTGAAAAATATATATAATAGTTTTGAGATGTCATCAAGTGATTTGCCCAGGTTAAGAGCTTCAAAATGAGTCCAAACTATTAGGTTGGCGGGAAAGTCTTTGTCACTTTTTCAATAGTTTATTTCTCAAAGAAAAAATAACCGAATAATTAATTATATTGTCCATCATTATCAACAACATGTCTCCAACGTTCCCTCAATTTATGGATTCCATTGCGGTAGAATCCAGCCGGGCGTGAGGCAAAGTATTGTTTGAGTGCCGCTTCGACCGCTCCACGGGAATTGAAGCTTCTTCCTTCGAAGGCACGTGTCATATCGCCAAATAACCAATAGTCGGAAGGAGCAAGATCAGGAGAATACGGGGGGTGAGGGAGAACATTCCATCCATATCCCATCAGCTCCTGCTTCACTTGTTTCTAAACATGTG</canonical>
            <polymorphic>CGATCGCGAAGCAAGTTATACCTTTAAAAAAAGAAAGAAACTCACATTTCAATGGTTTATTCCCATTGTAGGCTCCACATCCCCACCATCCACTAACAATCGGAATTTTGTCAAAACTACCGTAATCTGATTGTTGATTTTGAGCACAGAATGCAATTCCACACTTGATGAGCTCTTTTCTTATATTATTTTCTTCCAGCTGTTGTTCCAAATTTTTGGATTGTCTTCCAAAGAATTTTATGGCATTTATTGCTAGAGCTTCTGTTTGAAGACGTCCGAATTCATCACGATACAAGGGATTGTTTGAGAGGGCATCCAATGGTTCCATAATCTTCCATTTCAGTTTTCCGGCTGAAAATTTTCAGAAAAATGTTTTTTTTTCGGATTTTCGCAAACGTGACGTTTTAGAACCGTTCTAAAACGTCCGGTTGCCAAATTCAATCAACTTACAGTAACCCTGATAGGAACTAAAAACTTGTGCGCCAACAATCGAAATCGCRTCATCCGGTTCCATTCGATCAAATAGCAACATGGAAACTATCATTTCTGGGCACATCAAAAAGCGAATTTCTTCCTGAAAAATATATATAATAGTTTTGAGATGTCATCAAGTGATTTGCCCAGGTTAAGAGCTTCAAAATGAGTCCAAACTATTAGGTTGGCGGGAAAGTCTTTGTCACTTTTTCAATAGTTTATTTCTCAAAGAAAAAATAACCGAATAATTAATTATATTGTCCATCATTATCAACAACATGTCTCCAACGTTCCCTCAATTTATGGATTCCATTGCGGTAGAATCCAGCCGGGCGTGAGGCAAAGTATTGTTTGAGTGCCGCTTCGACCGCTCCACGGGAATTGAAGCTTCTTCCTTCGAAGGCACGTGTCATATCGCCAAATAACCAATAGTCGGAAGGAGCAAGATCAGGAGAATACGGGGGGTGAGGGAGAACATTCCATCCATATCCCATCAGCTCCTGCTTCACTTGTTTCTAAACATGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCCAAATTCAATCAACTTAC</pcr_primer_p1>
		<pcr_primer_p2>ACTCATTTTGAAGCTCTTAACCT</pcr_primer_p2>
		<pcr_amplicon_size>216</pcr_amplicon_size>
		<canonical_amplicon>TGCCAAATTCAATCAACTTACAGTAACCCTGATAGGAACTAAAAACTTGTGCGCCAACAATCGAAATCGCTTCATCCGGTTCCATTCGATCAAATAGCAACATGGAAACTATCATTTCTGGGCACATCAAAAAGCGAATTTCTTCCTGAAAAATATATATAATAGTTTTGAGATGTCATCAAGTGATTTGCCCAGGTTAAGAGCTTCAAAATGAGT</canonical_amplicon>
		<polymorphic_amplicon>TGCCAAATTCAATCAACTTACAGTAACCCTGATAGGAACTAAAAACTTGTGCGCCAACAATCGAAATCGCRTCATCCGGTTCCATTCGATCAAATAGCAACATGGAAACTATCATTTCTGGGCACATCAAAAAGCGAATTTCTTCCTGAAAAATATATATAATAGTTTTGAGATGTCATCAAGTGATTTGCCCAGGTTAAGAGCTTCAAAATGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28891</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>111869</contig_pos>
        <strand></strand>
        <context>ctgcgaattt[T/A]gcttgtttat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTAAGTTGTCATGTTTGAGCTCATTTTGAAGCTTAAAAACTGCGAATTT</left_flank>
        <right_flank>GCTTGTTTATATGAAAATCTGAATTCAACTCATTGAGAGCTTCAAAATAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTAATTTTTGAATTTTTTAGAAAATGTTTATTTTGAAATCGTCAAAAAATTTTAATTCTCTCATTTATATTCAATTAAGCCAAAAATAACAATTCTTAAAATTAGAATTTTTTTGAAAAACTTCAAATTTAAACATTTCAACGAATGGTATGAACATATCGAAGAATTTCAGAGAAGGTTAACTTTTTGCTGAAAATTTGAAACAGCAGTTTTTTGAATGAATATTTTGTATTTTCAAAATGAGTTTTCAACCTTTTCAGAATTTTTAGAATATTCGAATTTCTTCGAGAAATTCAATTTTTATACAATTCATGAGTTTAAAAAACGCCTAAAATGACGGTTTTCATAGAAATCTAATTCGATTCTGTTAGAGATATTCGAATTCTAGAAAAATCCCAATATTGAAAATATTCAAAGTTTGAAACAGTTTAATTGTTTTCAGTTTGTTTTAAGTTGTCATGTTTGAGCTCATTTTGAAGCTTAAAAACTGCGAATTTTGCTTGTTTATATGAAAATCTGAATTCAACTCATTGAGAGCTTCAAAATAAGCCCAAACACGCCATGATTCGGTGAGATTCGGAATTTCGGGCGCGTCGCGGTCGTGCGTCGCGTGTTTTGGGCGAAACATCAAAATCAACAGATTTGGGCTTTGTTTGGGCTCATTTTGAAGCTCACAACCTCACAAGTATGAAAAAATGTTTTTGTGGTGGTTAGGACACTTTGAAGCGATTTATGGTCCAAGTAAATTTGCCCCTGAAATTTTTGAAATTTTTCTAGTCGTGTTTTAAGCTTATTTTGAAGCACTCAAAGTCAGAAATTCAAACTGTTGTTTTGAAAATTGTAAATTTAAAGTTGTGAGCAATTTGGAAGGTCCACAAGGTGTCTTTCAAAAAGAATAAAGATGTTTTTTTGCTGTTTCAAAGTTTGCTTTTCCAAAAATCATCAAATATTTGTCTATTACGTTCCCTCTCCATCCCAAAATTAATTAATTAATCGAC</canonical>
            <polymorphic>TCTTAATTTTTGAATTTTTTAGAAAATGTTTATTTTGAAATCGTCAAAAAATTTTAATTCTCTCATTTATATTCAATTAAGCCAAAAATAACAATTCTTAAAATTAGAATTTTTTTGAAAAACTTCAAATTTAAACATTTCAACGAATGGTATGAACATATCGAAGAATTTCAGAGAAGGTTAACTTTTTGCTGAAAATTTGAAACAGCAGTTTTTTGAATGAATATTTTGTATTTTCAAAATGAGTTTTCAACCTTTTCAGAATTTTTAGAATATTCGAATTTCTTCGAGAAATTCAATTTTTATACAATTCATGAGTTTAAAAAACGCCTAAAATGACGGTTTTCATAGAAATCTAATTCGATTCTGTTAGAGATATTCGAATTCTAGAAAAATCCCAATATTGAAAATATTCAAAGTTTGAAACAGTTTAATTGTTTTCAGTTTGTTTTAAGTTGTCATGTTTGAGCTCATTTTGAAGCTTAAAAACTGCGAATTTWGCTTGTTTATATGAAAATCTGAATTCAACTCATTGAGAGCTTCAAAATAAGCCCAAACACGCCATGATTCGGTGAGATTCGGAATTTCGGGCGCGTCGCGGTCGTGCGTCGCGTGTTTTGGGCGAAACATCAAAATCAACAGATTTGGGCTTTGTTTGGGCTCATTTTGAAGCTCACAACCTCACAAGTATGAAAAAATGTTTTTGTGGTGGTTAGGACACTTTGAAGCGATTTATGGTCCAAGTAAATTTGCCCCTGAAATTTTTGAAATTTTTCTAGTCGTGTTTTAAGCTTATTTTGAAGCACTCAAAGTCAGAAATTCAAACTGTTGTTTTGAAAATTGTAAATTTAAAGTTGTGAGCAATTTGGAAGGTCCACAAGGTGTCTTTCAAAAAGAATAAAGATGTTTTTTTGCTGTTTCAAAGTTTGCTTTTCCAAAAATCATCAAATATTTGTCTATTACGTTCCCTCTCCATCCCAAAATTAATTAATTAATCGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTAATTGTTTTCAGTTTGTT</pcr_primer_p1>
		<pcr_primer_p2>GCAAATTTACTTGGACCATAA</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTAATTGTTTTCAGTTTGTTTTAAGTTGTCATGTTTGAGCTCATTTTGAAGCTTAAAAACTGCGAATTTTGCTTGTTTATATGAAAATCTGAATTCAACTCATTGAGAGCTTCAAAATAAGCCCAAACACGCCATGATTCGGTGAGATTCGGAATTTCGGGCGCGTCGCGGTCGTGCGTCGCGTGTTTTGGGCGAAACATCAAAATCAACAGATTTGGGCTTTGTTTGGGCTCATTTTGAAGCTCACAACCTCACAAGTATGAAAAAATGTTTTTGTGGTGGTTAGGACACTTTGAAGCGATTTATGGTCCAAGTAAATTTGC</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTAATTGTTTTCAGTTTGTTTTAAGTTGTCATGTTTGAGCTCATTTTGAAGCTTAAAAACTGCGAATTTWGCTTGTTTATATGAAAATCTGAATTCAACTCATTGAGAGCTTCAAAATAAGCCCAAACACGCCATGATTCGGTGAGATTCGGAATTTCGGGCGCGTCGCGGTCGTGCGTCGCGTGTTTTGGGCGAAACATCAAAATCAACAGATTTGGGCTTTGTTTGGGCTCATTTTGAAGCTCACAACCTCACAAGTATGAAAAAATGTTTTTGTGGTGGTTAGGACACTTTGAAGCGATTTATGGTCCAAGTAAATTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28892</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>111883</contig_pos>
        <strand></strand>
        <context>tgtttatatg[A/G]maatctgaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGAGCTCATTTTGAAGCTTAAAAACTGCGAATTTTGCTTGTTTATATG</left_flank>
        <right_flank>AAATCTGAATTCAACTCATTGAGAGCTTCAAAATAAGCCCAAACACGCCA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTAGAAAATGTTTATTTTGAAATCGTCAAAAAATTTTAATTCTCTCATTTATATTCAATTAAGCCAAAAATAACAATTCTTAAAATTAGAATTTTTTTGAAAAACTTCAAATTTAAACATTTCAACGAATGGTATGAACATATCGAAGAATTTCAGAGAAGGTTAACTTTTTGCTGAAAATTTGAAACAGCAGTTTTTTGAATGAATATTTTGTATTTTCAAAATGAGTTTTCAACCTTTTCAGAATTTTTAGAATATTCGAATTTCTTCGAGAAATTCAATTTTTATACAATTCATGAGTTTAAAAAACGCCTAAAATGACGGTTTTCATAGAAATCTAATTCGATTCTGTTAGAGATATTCGAATTCTAGAAAAATCCCAATATTGAAAATATTCAAAGTTTGAAACAGTTTAATTGTTTTCAGTTTGTTTTAAGTTGTCATGTTTGAGCTCATTTTGAAGCTTAAAAACTGCGAATTTTGCTTGTTTATATGAAAATCTGAATTCAACTCATTGAGAGCTTCAAAATAAGCCCAAACACGCCATGATTCGGTGAGATTCGGAATTTCGGGCGCGTCGCGGTCGTGCGTCGCGTGTTTTGGGCGAAACATCAAAATCAACAGATTTGGGCTTTGTTTGGGCTCATTTTGAAGCTCACAACCTCACAAGTATGAAAAAATGTTTTTGTGGTGGTTAGGACACTTTGAAGCGATTTATGGTCCAAGTAAATTTGCCCCTGAAATTTTTGAAATTTTTCTAGTCGTGTTTTAAGCTTATTTTGAAGCACTCAAAGTCAGAAATTCAAACTGTTGTTTTGAAAATTGTAAATTTAAAGTTGTGAGCAATTTGGAAGGTCCACAAGGTGTCTTTCAAAAAGAATAAAGATGTTTTTTTGCTGTTTCAAAGTTTGCTTTTCCAAAAATCATCAAATATTTGTCTATTACGTTCCCTCTCCATCCCAAAATTAATTAATTAATCGACTGTGAATTTTCCCC</canonical>
            <polymorphic>TTTTTTAGAAAATGTTTATTTTGAAATCGTCAAAAAATTTTAATTCTCTCATTTATATTCAATTAAGCCAAAAATAACAATTCTTAAAATTAGAATTTTTTTGAAAAACTTCAAATTTAAACATTTCAACGAATGGTATGAACATATCGAAGAATTTCAGAGAAGGTTAACTTTTTGCTGAAAATTTGAAACAGCAGTTTTTTGAATGAATATTTTGTATTTTCAAAATGAGTTTTCAACCTTTTCAGAATTTTTAGAATATTCGAATTTCTTCGAGAAATTCAATTTTTATACAATTCATGAGTTTAAAAAACGCCTAAAATGACGGTTTTCATAGAAATCTAATTCGATTCTGTTAGAGATATTCGAATTCTAGAAAAATCCCAATATTGAAAATATTCAAAGTTTGAAACAGTTTAATTGTTTTCAGTTTGTTTTAAGTTGTCATGTTTGAGCTCATTTTGAAGCTTAAAAACTGCGAATTTTGCTTGTTTATATGRAAATCTGAATTCAACTCATTGAGAGCTTCAAAATAAGCCCAAACACGCCATGATTCGGTGAGATTCGGAATTTCGGGCGCGTCGCGGTCGTGCGTCGCGTGTTTTGGGCGAAACATCAAAATCAACAGATTTGGGCTTTGTTTGGGCTCATTTTGAAGCTCACAACCTCACAAGTATGAAAAAATGTTTTTGTGGTGGTTAGGACACTTTGAAGCGATTTATGGTCCAAGTAAATTTGCCCCTGAAATTTTTGAAATTTTTCTAGTCGTGTTTTAAGCTTATTTTGAAGCACTCAAAGTCAGAAATTCAAACTGTTGTTTTGAAAATTGTAAATTTAAAGTTGTGAGCAATTTGGAAGGTCCACAAGGTGTCTTTCAAAAAGAATAAAGATGTTTTTTTGCTGTTTCAAAGTTTGCTTTTCCAAAAATCATCAAATATTTGTCTATTACGTTCCCTCTCCATCCCAAAATTAATTAATTAATCGACTGTGAATTTTCCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTAATTGTTTTCAGTTTGTT</pcr_primer_p1>
		<pcr_primer_p2>GCAAATTTACTTGGACCATAA</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTAATTGTTTTCAGTTTGTTTTAAGTTGTCATGTTTGAGCTCATTTTGAAGCTTAAAAACTGCGAATTTTGCTTGTTTATATGAAAATCTGAATTCAACTCATTGAGAGCTTCAAAATAAGCCCAAACACGCCATGATTCGGTGAGATTCGGAATTTCGGGCGCGTCGCGGTCGTGCGTCGCGTGTTTTGGGCGAAACATCAAAATCAACAGATTTGGGCTTTGTTTGGGCTCATTTTGAAGCTCACAACCTCACAAGTATGAAAAAATGTTTTTGTGGTGGTTAGGACACTTTGAAGCGATTTATGGTCCAAGTAAATTTGC</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTAATTGTTTTCAGTTTGTTTTAAGTTGTCATGTTTGAGCTCATTTTGAAGCTTAAAAACTGCGAATTTTGCTTGTTTATATGRAAATCTGAATTCAACTCATTGAGAGCTTCAAAATAAGCCCAAACACGCCATGATTCGGTGAGATTCGGAATTTCGGGCGCGTCGCGGTCGTGCGTCGCGTGTTTTGGGCGAAACATCAAAATCAACAGATTTGGGCTTTGTTTGGGCTCATTTTGAAGCTCACAACCTCACAAGTATGAAAAAATGTTTTTGTGGTGGTTAGGACACTTTGAAGCGATTTATGGTCCAAGTAAATTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28893</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>111884</contig_pos>
        <strand></strand>
        <context>gtttatatgr[A/C]aatctgaatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGAGCTCATTTTGAAGCTTAAAAACTGCGAATTTTGCTTGTTTATATGA</left_flank>
        <right_flank>AATCTGAATTCAACTCATTGAGAGCTTCAAAATAAGCCCAAACACGCCAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTAGAAAATGTTTATTTTGAAATCGTCAAAAAATTTTAATTCTCTCATTTATATTCAATTAAGCCAAAAATAACAATTCTTAAAATTAGAATTTTTTTGAAAAACTTCAAATTTAAACATTTCAACGAATGGTATGAACATATCGAAGAATTTCAGAGAAGGTTAACTTTTTGCTGAAAATTTGAAACAGCAGTTTTTTGAATGAATATTTTGTATTTTCAAAATGAGTTTTCAACCTTTTCAGAATTTTTAGAATATTCGAATTTCTTCGAGAAATTCAATTTTTATACAATTCATGAGTTTAAAAAACGCCTAAAATGACGGTTTTCATAGAAATCTAATTCGATTCTGTTAGAGATATTCGAATTCTAGAAAAATCCCAATATTGAAAATATTCAAAGTTTGAAACAGTTTAATTGTTTTCAGTTTGTTTTAAGTTGTCATGTTTGAGCTCATTTTGAAGCTTAAAAACTGCGAATTTTGCTTGTTTATATGAAAATCTGAATTCAACTCATTGAGAGCTTCAAAATAAGCCCAAACACGCCATGATTCGGTGAGATTCGGAATTTCGGGCGCGTCGCGGTCGTGCGTCGCGTGTTTTGGGCGAAACATCAAAATCAACAGATTTGGGCTTTGTTTGGGCTCATTTTGAAGCTCACAACCTCACAAGTATGAAAAAATGTTTTTGTGGTGGTTAGGACACTTTGAAGCGATTTATGGTCCAAGTAAATTTGCCCCTGAAATTTTTGAAATTTTTCTAGTCGTGTTTTAAGCTTATTTTGAAGCACTCAAAGTCAGAAATTCAAACTGTTGTTTTGAAAATTGTAAATTTAAAGTTGTGAGCAATTTGGAAGGTCCACAAGGTGTCTTTCAAAAAGAATAAAGATGTTTTTTTGCTGTTTCAAAGTTTGCTTTTCCAAAAATCATCAAATATTTGTCTATTACGTTCCCTCTCCATCCCAAAATTAATTAATTAATCGACTGTGAATTTTCCCCT</canonical>
            <polymorphic>TTTTTAGAAAATGTTTATTTTGAAATCGTCAAAAAATTTTAATTCTCTCATTTATATTCAATTAAGCCAAAAATAACAATTCTTAAAATTAGAATTTTTTTGAAAAACTTCAAATTTAAACATTTCAACGAATGGTATGAACATATCGAAGAATTTCAGAGAAGGTTAACTTTTTGCTGAAAATTTGAAACAGCAGTTTTTTGAATGAATATTTTGTATTTTCAAAATGAGTTTTCAACCTTTTCAGAATTTTTAGAATATTCGAATTTCTTCGAGAAATTCAATTTTTATACAATTCATGAGTTTAAAAAACGCCTAAAATGACGGTTTTCATAGAAATCTAATTCGATTCTGTTAGAGATATTCGAATTCTAGAAAAATCCCAATATTGAAAATATTCAAAGTTTGAAACAGTTTAATTGTTTTCAGTTTGTTTTAAGTTGTCATGTTTGAGCTCATTTTGAAGCTTAAAAACTGCGAATTTTGCTTGTTTATATGAMAATCTGAATTCAACTCATTGAGAGCTTCAAAATAAGCCCAAACACGCCATGATTCGGTGAGATTCGGAATTTCGGGCGCGTCGCGGTCGTGCGTCGCGTGTTTTGGGCGAAACATCAAAATCAACAGATTTGGGCTTTGTTTGGGCTCATTTTGAAGCTCACAACCTCACAAGTATGAAAAAATGTTTTTGTGGTGGTTAGGACACTTTGAAGCGATTTATGGTCCAAGTAAATTTGCCCCTGAAATTTTTGAAATTTTTCTAGTCGTGTTTTAAGCTTATTTTGAAGCACTCAAAGTCAGAAATTCAAACTGTTGTTTTGAAAATTGTAAATTTAAAGTTGTGAGCAATTTGGAAGGTCCACAAGGTGTCTTTCAAAAAGAATAAAGATGTTTTTTTGCTGTTTCAAAGTTTGCTTTTCCAAAAATCATCAAATATTTGTCTATTACGTTCCCTCTCCATCCCAAAATTAATTAATTAATCGACTGTGAATTTTCCCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTAATTGTTTTCAGTTTGTT</pcr_primer_p1>
		<pcr_primer_p2>GCAAATTTACTTGGACCATAA</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTAATTGTTTTCAGTTTGTTTTAAGTTGTCATGTTTGAGCTCATTTTGAAGCTTAAAAACTGCGAATTTTGCTTGTTTATATGAAAATCTGAATTCAACTCATTGAGAGCTTCAAAATAAGCCCAAACACGCCATGATTCGGTGAGATTCGGAATTTCGGGCGCGTCGCGGTCGTGCGTCGCGTGTTTTGGGCGAAACATCAAAATCAACAGATTTGGGCTTTGTTTGGGCTCATTTTGAAGCTCACAACCTCACAAGTATGAAAAAATGTTTTTGTGGTGGTTAGGACACTTTGAAGCGATTTATGGTCCAAGTAAATTTGC</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTAATTGTTTTCAGTTTGTTTTAAGTTGTCATGTTTGAGCTCATTTTGAAGCTTAAAAACTGCGAATTTTGCTTGTTTATATGAMAATCTGAATTCAACTCATTGAGAGCTTCAAAATAAGCCCAAACACGCCATGATTCGGTGAGATTCGGAATTTCGGGCGCGTCGCGGTCGTGCGTCGCGTGTTTTGGGCGAAACATCAAAATCAACAGATTTGGGCTTTGTTTGGGCTCATTTTGAAGCTCACAACCTCACAAGTATGAAAAAATGTTTTTGTGGTGGTTAGGACACTTTGAAGCGATTTATGGTCCAAGTAAATTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28894</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>111897</contig_pos>
        <strand></strand>
        <context>tctgaattca[A/G]ctcattgaga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGCTTAAAAACTGCGAATTTTGCTTGTTTATATGAAAATCTGAATTCA</left_flank>
        <right_flank>CTCATTGAGAGCTTCAAAATAAGCCCAAACACGCCATGATTCGGTGAGAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATTTTGAAATCGTCAAAAAATTTTAATTCTCTCATTTATATTCAATTAAGCCAAAAATAACAATTCTTAAAATTAGAATTTTTTTGAAAAACTTCAAATTTAAACATTTCAACGAATGGTATGAACATATCGAAGAATTTCAGAGAAGGTTAACTTTTTGCTGAAAATTTGAAACAGCAGTTTTTTGAATGAATATTTTGTATTTTCAAAATGAGTTTTCAACCTTTTCAGAATTTTTAGAATATTCGAATTTCTTCGAGAAATTCAATTTTTATACAATTCATGAGTTTAAAAAACGCCTAAAATGACGGTTTTCATAGAAATCTAATTCGATTCTGTTAGAGATATTCGAATTCTAGAAAAATCCCAATATTGAAAATATTCAAAGTTTGAAACAGTTTAATTGTTTTCAGTTTGTTTTAAGTTGTCATGTTTGAGCTCATTTTGAAGCTTAAAAACTGCGAATTTTGCTTGTTTATATGAAAATCTGAATTCAACTCATTGAGAGCTTCAAAATAAGCCCAAACACGCCATGATTCGGTGAGATTCGGAATTTCGGGCGCGTCGCGGTCGTGCGTCGCGTGTTTTGGGCGAAACATCAAAATCAACAGATTTGGGCTTTGTTTGGGCTCATTTTGAAGCTCACAACCTCACAAGTATGAAAAAATGTTTTTGTGGTGGTTAGGACACTTTGAAGCGATTTATGGTCCAAGTAAATTTGCCCCTGAAATTTTTGAAATTTTTCTAGTCGTGTTTTAAGCTTATTTTGAAGCACTCAAAGTCAGAAATTCAAACTGTTGTTTTGAAAATTGTAAATTTAAAGTTGTGAGCAATTTGGAAGGTCCACAAGGTGTCTTTCAAAAAGAATAAAGATGTTTTTTTGCTGTTTCAAAGTTTGCTTTTCCAAAAATCATCAAATATTTGTCTATTACGTTCCCTCTCCATCCCAAAATTAATTAATTAATCGACTGTGAATTTTCCCCTATTTTCAGATGAA</canonical>
            <polymorphic>TTTATTTTGAAATCGTCAAAAAATTTTAATTCTCTCATTTATATTCAATTAAGCCAAAAATAACAATTCTTAAAATTAGAATTTTTTTGAAAAACTTCAAATTTAAACATTTCAACGAATGGTATGAACATATCGAAGAATTTCAGAGAAGGTTAACTTTTTGCTGAAAATTTGAAACAGCAGTTTTTTGAATGAATATTTTGTATTTTCAAAATGAGTTTTCAACCTTTTCAGAATTTTTAGAATATTCGAATTTCTTCGAGAAATTCAATTTTTATACAATTCATGAGTTTAAAAAACGCCTAAAATGACGGTTTTCATAGAAATCTAATTCGATTCTGTTAGAGATATTCGAATTCTAGAAAAATCCCAATATTGAAAATATTCAAAGTTTGAAACAGTTTAATTGTTTTCAGTTTGTTTTAAGTTGTCATGTTTGAGCTCATTTTGAAGCTTAAAAACTGCGAATTTTGCTTGTTTATATGAAAATCTGAATTCARCTCATTGAGAGCTTCAAAATAAGCCCAAACACGCCATGATTCGGTGAGATTCGGAATTTCGGGCGCGTCGCGGTCGTGCGTCGCGTGTTTTGGGCGAAACATCAAAATCAACAGATTTGGGCTTTGTTTGGGCTCATTTTGAAGCTCACAACCTCACAAGTATGAAAAAATGTTTTTGTGGTGGTTAGGACACTTTGAAGCGATTTATGGTCCAAGTAAATTTGCCCCTGAAATTTTTGAAATTTTTCTAGTCGTGTTTTAAGCTTATTTTGAAGCACTCAAAGTCAGAAATTCAAACTGTTGTTTTGAAAATTGTAAATTTAAAGTTGTGAGCAATTTGGAAGGTCCACAAGGTGTCTTTCAAAAAGAATAAAGATGTTTTTTTGCTGTTTCAAAGTTTGCTTTTCCAAAAATCATCAAATATTTGTCTATTACGTTCCCTCTCCATCCCAAAATTAATTAATTAATCGACTGTGAATTTTCCCCTATTTTCAGATGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTAATTGTTTTCAGTTTGTT</pcr_primer_p1>
		<pcr_primer_p2>GCAAATTTACTTGGACCATAA</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTAATTGTTTTCAGTTTGTTTTAAGTTGTCATGTTTGAGCTCATTTTGAAGCTTAAAAACTGCGAATTTTGCTTGTTTATATGAAAATCTGAATTCAACTCATTGAGAGCTTCAAAATAAGCCCAAACACGCCATGATTCGGTGAGATTCGGAATTTCGGGCGCGTCGCGGTCGTGCGTCGCGTGTTTTGGGCGAAACATCAAAATCAACAGATTTGGGCTTTGTTTGGGCTCATTTTGAAGCTCACAACCTCACAAGTATGAAAAAATGTTTTTGTGGTGGTTAGGACACTTTGAAGCGATTTATGGTCCAAGTAAATTTGC</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTAATTGTTTTCAGTTTGTTTTAAGTTGTCATGTTTGAGCTCATTTTGAAGCTTAAAAACTGCGAATTTTGCTTGTTTATATGAAAATCTGAATTCARCTCATTGAGAGCTTCAAAATAAGCCCAAACACGCCATGATTCGGTGAGATTCGGAATTTCGGGCGCGTCGCGGTCGTGCGTCGCGTGTTTTGGGCGAAACATCAAAATCAACAGATTTGGGCTTTGTTTGGGCTCATTTTGAAGCTCACAACCTCACAAGTATGAAAAAATGTTTTTGTGGTGGTTAGGACACTTTGAAGCGATTTATGGTCCAAGTAAATTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28895</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>112090</contig_pos>
        <strand></strand>
        <context>GGTTAGGACA[C/T]TTTGAAGCGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCTCACAACCTCACAAGTATGAAAAAATGTTTTTGTGGTGGTTAGGACA</left_flank>
        <right_flank>TTTGAAGCGATTTATGGTCCAAGTAAATTTGCCCCTGAAATTTTTGAAAT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATATTTTGTATTTTCAAAATGAGTTTTCAACCTTTTCAGAATTTTTAGAATATTCGAATTTCTTCGAGAAATTCAATTTTTATACAATTCATGAGTTTAAAAAACGCCTAAAATGACGGTTTTCATAGAAATCTAATTCGATTCTGTTAGAGATATTCGAATTCTAGAAAAATCCCAATATTGAAAATATTCAAAGTTTGAAACAGTTTAATTGTTTTCAGTTTGTTTTAAGTTGTCATGTTTGAGCTCATTTTGAAGCTTAAAAACTGCGAATTTTGCTTGTTTATATGAAAATCTGAATTCAACTCATTGAGAGCTTCAAAATAAGCCCAAACACGCCATGATTCGGTGAGATTCGGAATTTCGGGCGCGTCGCGGTCGTGCGTCGCGTGTTTTGGGCGAAACATCAAAATCAACAGATTTGGGCTTTGTTTGGGCTCATTTTGAAGCTCACAACCTCACAAGTATGAAAAAATGTTTTTGTGGTGGTTAGGACACTTTGAAGCGATTTATGGTCCAAGTAAATTTGCCCCTGAAATTTTTGAAATTTTTCTAGTCGTGTTTTAAGCTTATTTTGAAGCACTCAAAGTCAGAAATTCAAACTGTTGTTTTGAAAATTGTAAATTTAAAGTTGTGAGCAATTTGGAAGGTCCACAAGGTGTCTTTCAAAAAGAATAAAGATGTTTTTTTGCTGTTTCAAAGTTTGCTTTTCCAAAAATCATCAAATATTTGTCTATTACGTTCCCTCTCCATCCCAAAATTAATTAATTAATCGACTGTGAATTTTCCCCTATTTTCAGATGAAAACAATTTTCTTTGTTTTCACAAAATCCTTTATTATACTTCGACTTTCTGGAATTTTTAAACTTTTTTGGAATTTTCAATTTTCCAAAAATCAATTTCTCTGTTTCAAAACTTTGTCTCGAATTTTTTAAATGTTAAAGTTTTGATAAGTGAAAACCAATGAATTCTGGTTTTTGAAATTTTCCTGACAAGGG</canonical>
            <polymorphic>GAATATTTTGTATTTTCAAAATGAGTTTTCAACCTTTTCAGAATTTTTAGAATATTCGAATTTCTTCGAGAAATTCAATTTTTATACAATTCATGAGTTTAAAAAACGCCTAAAATGACGGTTTTCATAGAAATCTAATTCGATTCTGTTAGAGATATTCGAATTCTAGAAAAATCCCAATATTGAAAATATTCAAAGTTTGAAACAGTTTAATTGTTTTCAGTTTGTTTTAAGTTGTCATGTTTGAGCTCATTTTGAAGCTTAAAAACTGCGAATTTTGCTTGTTTATATGAAAATCTGAATTCAACTCATTGAGAGCTTCAAAATAAGCCCAAACACGCCATGATTCGGTGAGATTCGGAATTTCGGGCGCGTCGCGGTCGTGCGTCGCGTGTTTTGGGCGAAACATCAAAATCAACAGATTTGGGCTTTGTTTGGGCTCATTTTGAAGCTCACAACCTCACAAGTATGAAAAAATGTTTTTGTGGTGGTTAGGACAYTTTGAAGCGATTTATGGTCCAAGTAAATTTGCCCCTGAAATTTTTGAAATTTTTCTAGTCGTGTTTTAAGCTTATTTTGAAGCACTCAAAGTCAGAAATTCAAACTGTTGTTTTGAAAATTGTAAATTTAAAGTTGTGAGCAATTTGGAAGGTCCACAAGGTGTCTTTCAAAAAGAATAAAGATGTTTTTTTGCTGTTTCAAAGTTTGCTTTTCCAAAAATCATCAAATATTTGTCTATTACGTTCCCTCTCCATCCCAAAATTAATTAATTAATCGACTGTGAATTTTCCCCTATTTTCAGATGAAAACAATTTTCTTTGTTTTCACAAAATCCTTTATTATACTTCGACTTTCTGGAATTTTTAAACTTTTTTGGAATTTTCAATTTTCCAAAAATCAATTTCTCTGTTTCAAAACTTTGTCTCGAATTTTTTAAATGTTAAAGTTTTGATAAGTGAAAACCAATGAATTCTGGTTTTTGAAATTTTCCTGACAAGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>338 131 120 64 61 54 44 42 32 24 21 18 15 9 9 8 7 3</canonical_bands>
                <polymorphic_bands>338 131 120 73 61 54 44 42 32 24 21 18 15 9 8 7 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTTAATTGTTTTCAGTTTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTCCAAATTGCTCACAACT</pcr_primer_p2>
		<pcr_amplicon_size>445</pcr_amplicon_size>
		<canonical_amplicon>AGTTTAATTGTTTTCAGTTTGTTTTAAGTTGTCATGTTTGAGCTCATTTTGAAGCTTAAAAACTGCGAATTTTGCTTGTTTATATGAAAATCTGAATTCAACTCATTGAGAGCTTCAAAATAAGCCCAAACACGCCATGATTCGGTGAGATTCGGAATTTCGGGCGCGTCGCGGTCGTGCGTCGCGTGTTTTGGGCGAAACATCAAAATCAACAGATTTGGGCTTTGTTTGGGCTCATTTTGAAGCTCACAACCTCACAAGTATGAAAAAATGTTTTTGTGGTGGTTAGGACACTTTGAAGCGATTTATGGTCCAAGTAAATTTGCCCCTGAAATTTTTGAAATTTTTCTAGTCGTGTTTTAAGCTTATTTTGAAGCACTCAAAGTCAGAAATTCAAACTGTTGTTTTGAAAATTGTAAATTTAAAGTTGTGAGCAATTTGGAAG</canonical_amplicon>
		<polymorphic_amplicon>AGTTTAATTGTTTTCAGTTTGTTTTAAGTTGTCATGTTTGAGCTCATTTTGAAGCTTAAAAACTGCGAATTTTGCTTGTTTATATGAAAATCTGAATTCAACTCATTGAGAGCTTCAAAATAAGCCCAAACACGCCATGATTCGGTGAGATTCGGAATTTCGGGCGCGTCGCGGTCGTGCGTCGCGTGTTTTGGGCGAAACATCAAAATCAACAGATTTGGGCTTTGTTTGGGCTCATTTTGAAGCTCACAACCTCACAAGTATGAAAAAATGTTTTTGTGGTGGTTAGGACAYTTTGAAGCGATTTATGGTCCAAGTAAATTTGCCCCTGAAATTTTTGAAATTTTTCTAGTCGTGTTTTAAGCTTATTTTGAAGCACTCAAAGTCAGAAATTCAAACTGTTGTTTTGAAAATTGTAAATTTAAAGTTGTGAGCAATTTGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28896</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>112159</contig_pos>
        <strand></strand>
        <context>tcgtgtttta[A/G]gcttattttg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAAGTAAATTTGCCCCTGAAATTTTTGAAATTTTTCTAGTCGTGTTTTA</left_flank>
        <right_flank>GCTTATTTTGAAGCACTCAAAGTCAGAAATTCAAACTGTTGTTTTGAAAA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAATTCAATTTTTATACAATTCATGAGTTTAAAAAACGCCTAAAATGACGGTTTTCATAGAAATCTAATTCGATTCTGTTAGAGATATTCGAATTCTAGAAAAATCCCAATATTGAAAATATTCAAAGTTTGAAACAGTTTAATTGTTTTCAGTTTGTTTTAAGTTGTCATGTTTGAGCTCATTTTGAAGCTTAAAAACTGCGAATTTTGCTTGTTTATATGAAAATCTGAATTCAACTCATTGAGAGCTTCAAAATAAGCCCAAACACGCCATGATTCGGTGAGATTCGGAATTTCGGGCGCGTCGCGGTCGTGCGTCGCGTGTTTTGGGCGAAACATCAAAATCAACAGATTTGGGCTTTGTTTGGGCTCATTTTGAAGCTCACAACCTCACAAGTATGAAAAAATGTTTTTGTGGTGGTTAGGACACTTTGAAGCGATTTATGGTCCAAGTAAATTTGCCCCTGAAATTTTTGAAATTTTTCTAGTCGTGTTTTAAGCTTATTTTGAAGCACTCAAAGTCAGAAATTCAAACTGTTGTTTTGAAAATTGTAAATTTAAAGTTGTGAGCAATTTGGAAGGTCCACAAGGTGTCTTTCAAAAAGAATAAAGATGTTTTTTTGCTGTTTCAAAGTTTGCTTTTCCAAAAATCATCAAATATTTGTCTATTACGTTCCCTCTCCATCCCAAAATTAATTAATTAATCGACTGTGAATTTTCCCCTATTTTCAGATGAAAACAATTTTCTTTGTTTTCACAAAATCCTTTATTATACTTCGACTTTCTGGAATTTTTAAACTTTTTTGGAATTTTCAATTTTCCAAAAATCAATTTCTCTGTTTCAAAACTTTGTCTCGAATTTTTTAAATGTTAAAGTTTTGATAAGTGAAAACCAATGAATTCTGGTTTTTGAAATTTTCCTGACAAGGGAACATTTTAAGTCGATAAGCTGATTCGCATAAACTAACCGTAGAGAATGAAAGAGCGTGTTTCAAAACC</canonical>
            <polymorphic>GAAATTCAATTTTTATACAATTCATGAGTTTAAAAAACGCCTAAAATGACGGTTTTCATAGAAATCTAATTCGATTCTGTTAGAGATATTCGAATTCTAGAAAAATCCCAATATTGAAAATATTCAAAGTTTGAAACAGTTTAATTGTTTTCAGTTTGTTTTAAGTTGTCATGTTTGAGCTCATTTTGAAGCTTAAAAACTGCGAATTTTGCTTGTTTATATGAAAATCTGAATTCAACTCATTGAGAGCTTCAAAATAAGCCCAAACACGCCATGATTCGGTGAGATTCGGAATTTCGGGCGCGTCGCGGTCGTGCGTCGCGTGTTTTGGGCGAAACATCAAAATCAACAGATTTGGGCTTTGTTTGGGCTCATTTTGAAGCTCACAACCTCACAAGTATGAAAAAATGTTTTTGTGGTGGTTAGGACACTTTGAAGCGATTTATGGTCCAAGTAAATTTGCCCCTGAAATTTTTGAAATTTTTCTAGTCGTGTTTTARGCTTATTTTGAAGCACTCAAAGTCAGAAATTCAAACTGTTGTTTTGAAAATTGTAAATTTAAAGTTGTGAGCAATTTGGAAGGTCCACAAGGTGTCTTTCAAAAAGAATAAAGATGTTTTTTTGCTGTTTCAAAGTTTGCTTTTCCAAAAATCATCAAATATTTGTCTATTACGTTCCCTCTCCATCCCAAAATTAATTAATTAATCGACTGTGAATTTTCCCCTATTTTCAGATGAAAACAATTTTCTTTGTTTTCACAAAATCCTTTATTATACTTCGACTTTCTGGAATTTTTAAACTTTTTTGGAATTTTCAATTTTCCAAAAATCAATTTCTCTGTTTCAAAACTTTGTCTCGAATTTTTTAAATGTTAAAGTTTTGATAAGTGAAAACCAATGAATTCTGGTTTTTGAAATTTTCCTGACAAGGGAACATTTTAAGTCGATAAGCTGATTCGCATAAACTAACCGTAGAGAATGAAAGAGCGTGTTTCAAAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>449 179 133 119 58 50 12</canonical_bands>
                <polymorphic_bands>568 179 133 58 50 12</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>449 179 119 98 58 50 12 12 12 11</canonical_bands>
                <polymorphic_bands>568 179 98 58 50 12 12 12 11</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 310 189</canonical_bands>
                <polymorphic_bands>811 189</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>304 135 111 93 70 66 62 62 32 30 20 7 4 4</canonical_bands>
                <polymorphic_bands>366 135 111 93 70 66 62 32 30 20 7 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGATTTATGGTCCAAGTAA</pcr_primer_p1>
		<pcr_primer_p2>GAGAGGGAACGTAATAGACAAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GCGATTTATGGTCCAAGTAAATTTGCCCCTGAAATTTTTGAAATTTTTCTAGTCGTGTTTTAAGCTTATTTTGAAGCACTCAAAGTCAGAAATTCAAACTGTTGTTTTGAAAATTGTAAATTTAAAGTTGTGAGCAATTTGGAAGGTCCACAAGGTGTCTTTCAAAAAGAATAAAGATGTTTTTTTGCTGTTTCAAAGTTTGCTTTTCCAAAAATCATCAAATATTTGTCTATTACGTTCCCTCTC</canonical_amplicon>
		<polymorphic_amplicon>GCGATTTATGGTCCAAGTAAATTTGCCCCTGAAATTTTTGAAATTTTTCTAGTCGTGTTTTARGCTTATTTTGAAGCACTCAAAGTCAGAAATTCAAACTGTTGTTTTGAAAATTGTAAATTTAAAGTTGTGAGCAATTTGGAAGGTCCACAAGGTGTCTTTCAAAAAGAATAAAGATGTTTTTTTGCTGTTTCAAAGTTTGCTTTTCCAAAAATCATCAAATATTTGTCTATTACGTTCCCTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28897</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>121936</contig_pos>
        <strand></strand>
        <context>CAGCACATTG[T/C]ACATGCGAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGACTAGTTTTTGGTTTGAAGAACATTCGTGCGAGCAGTGCAGCACATTG</left_flank>
        <right_flank>ACATGCGAGAATGTCGCTGATTCGACAAAATCCGTGAGACGGTAGATGCG</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATTCGATCGAAATAGGCGAACAGGAAGCGCAGTTTTTCAATCGATAGTTCATCGTCGTGTTCCAGGAGGCTGGAAGGCTCATTTTGAAGATCAGAATTCAAGAATTTCAATTCTATATATCAAAATTTGAACTGAGCTCACCGAGAGCTTCAAAATGAGCCCAAACACGCCACGATTCGGAGAGATTCAAAATTACGGGTGTGTCGCGGTCGTGCGTCGCGTGTTTTGGGCGAAAAATCAAAATTAACCGATTTGTATCGTGTTCGGGCTCGTTTCAAAGCTCACAATCTCACAAATCTGGAAATTTGGGCTTTCTGGCTTTTTAGGCCGGTCTGGGCTCTTTTTGAGCCAATTTTCATCACATTTCCAGATATTTCAGCTTGATGTTTCGGGATTTTTAAGCTCGAAATTTTGAGAAAAACTACTTACTAATGAAAACTGAGCGAATGACTAGTTTTTGGTTTGAAGAACATTCGTGCGAGCAGTGCAGCACATTGTACATGCGAGAATGTCGCTGATTCGACAAAATCCGTGAGACGGTAGATGCGCTGAAAATGTGCAAAATTAGACAATAATTTTTAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGT</canonical>
            <polymorphic>CGATTCGATCGAAATAGGCGAACAGGAAGCGCAGTTTTTCAATCGATAGTTCATCGTCGTGTTCCAGGAGGCTGGAAGGCTCATTTTGAAGATCAGAATTCAAGAATTTCAATTCTATATATCAAAATTTGAACTGAGCTCACCGAGAGCTTCAAAATGAGCCCAAACACGCCACGATTCGGAGAGATTCAAAATTACGGGTGTGTCGCGGTCGTGCGTCGCGTGTTTTGGGCGAAAAATCAAAATTAACCGATTTGTATCGTGTTCGGGCTCGTTTCAAAGCTCACAATCTCACAAATCTGGAAATTTGGGCTTTCTGGCTTTTTAGGCCGGTCTGGGCTCTTTTTGAGCCAATTTTCATCACATTTCCAGATATTTCAGCTTGATGTTTCGGGATTTTTAAGCTCGAAATTTTGAGAAAAACTACTTACTAATGAAAACTGAGCGAATGACTAGTTTTTGGTTTGAAGAACATTCGTGCGAGCAGTGCAGCACATTGYACATGCGAGAATGTCGCTGATTCGACAAAATCCGTGAGACGGTAGATGCGCTGAAAATGTGCAAAATTAGACAATAATTTTTAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGTACA</site>
                <isoschizomers>
                    <enzyme>AauI</enzyme>
                    <enzyme>Bsp1407I</enzyme>
                    <enzyme>BsrGI</enzyme>
                    <enzyme>SspBI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTTCATCACATTTCCAGATA</pcr_primer_p1>
		<pcr_primer_p2>AGCCCAAAATTAGCTAAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATTTTCATCACATTTCCAGATATTTCAGCTTGATGTTTCGGGATTTTTAAGCTCGAAATTTTGAGAAAAACTACTTACTAATGAAAACTGAGCGAATGACTAGTTTTTGGTTTGAAGAACATTCGTGCGAGCAGTGCAGCACATTGTACATGCGAGAATGTCGCTGATTCGACAAAATCCGTGAGACGGTAGATGCGCTGAAAATGTGCAAAATTAGACAATAATTTTTAGCTAATTTTGGGCT</canonical_amplicon>
		<polymorphic_amplicon>AATTTTCATCACATTTCCAGATATTTCAGCTTGATGTTTCGGGATTTTTAAGCTCGAAATTTTGAGAAAAACTACTTACTAATGAAAACTGAGCGAATGACTAGTTTTTGGTTTGAAGAACATTCGTGCGAGCAGTGCAGCACATTGYACATGCGAGAATGTCGCTGATTCGACAAAATCCGTGAGACGGTAGATGCGCTGAAAATGTGCAAAATTAGACAATAATTTTTAGCTAATTTTGGGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28898</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>121996</contig_pos>
        <strand></strand>
        <context>GCTGAAAATG[T/A]GCAAAATTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATGTCGCTGATTCGACAAAATCCGTGAGACGGTAGATGCGCTGAAAATG</left_flank>
        <right_flank>GCAAAATTAGACAATAATTTTTAGCTAATTTTGGGCTCTTTTGCCCCGAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCCAGGAGGCTGGAAGGCTCATTTTGAAGATCAGAATTCAAGAATTTCAATTCTATATATCAAAATTTGAACTGAGCTCACCGAGAGCTTCAAAATGAGCCCAAACACGCCACGATTCGGAGAGATTCAAAATTACGGGTGTGTCGCGGTCGTGCGTCGCGTGTTTTGGGCGAAAAATCAAAATTAACCGATTTGTATCGTGTTCGGGCTCGTTTCAAAGCTCACAATCTCACAAATCTGGAAATTTGGGCTTTCTGGCTTTTTAGGCCGGTCTGGGCTCTTTTTGAGCCAATTTTCATCACATTTCCAGATATTTCAGCTTGATGTTTCGGGATTTTTAAGCTCGAAATTTTGAGAAAAACTACTTACTAATGAAAACTGAGCGAATGACTAGTTTTTGGTTTGAAGAACATTCGTGCGAGCAGTGCAGCACATTGTACATGCGAGAATGTCGCTGATTCGACAAAATCCGTGAGACGGTAGATGCGCTGAAAATGTGCAAAATTAGACAATAATTTTTAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGG</canonical>
            <polymorphic>GTTCCAGGAGGCTGGAAGGCTCATTTTGAAGATCAGAATTCAAGAATTTCAATTCTATATATCAAAATTTGAACTGAGCTCACCGAGAGCTTCAAAATGAGCCCAAACACGCCACGATTCGGAGAGATTCAAAATTACGGGTGTGTCGCGGTCGTGCGTCGCGTGTTTTGGGCGAAAAATCAAAATTAACCGATTTGTATCGTGTTCGGGCTCGTTTCAAAGCTCACAATCTCACAAATCTGGAAATTTGGGCTTTCTGGCTTTTTAGGCCGGTCTGGGCTCTTTTTGAGCCAATTTTCATCACATTTCCAGATATTTCAGCTTGATGTTTCGGGATTTTTAAGCTCGAAATTTTGAGAAAAACTACTTACTAATGAAAACTGAGCGAATGACTAGTTTTTGGTTTGAAGAACATTCGTGCGAGCAGTGCAGCACATTGTACATGCGAGAATGTCGCTGATTCGACAAAATCCGTGAGACGGTAGATGCGCTGAAAATGWGCAAAATTAGACAATAATTTTTAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>429 299 200 72</canonical_bands>
                <polymorphic_bands>429 371 200</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>202 117 89 86 83 82 69 42 39 29 27 25 22 16 11 11 10 9 9 8 5 5 2 2</canonical_bands>
                <polymorphic_bands>202 117 111 89 83 82 69 42 39 29 27 22 16 11 11 10 9 9 8 5 5 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGAAATTTTGAGAAAAACTACT</pcr_primer_p1>
		<pcr_primer_p2>GTGTTTCCGGTTCAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TCGAAATTTTGAGAAAAACTACTTACTAATGAAAACTGAGCGAATGACTAGTTTTTGGTTTGAAGAACATTCGTGCGAGCAGTGCAGCACATTGTACATGCGAGAATGTCGCTGATTCGACAAAATCCGTGAGACGGTAGATGCGCTGAAAATGTGCAAAATTAGACAATAATTTTTAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACAC</canonical_amplicon>
		<polymorphic_amplicon>TCGAAATTTTGAGAAAAACTACTTACTAATGAAAACTGAGCGAATGACTAGTTTTTGGTTTGAAGAACATTCGTGCGAGCAGTGCAGCACATTGTACATGCGAGAATGTCGCTGATTCGACAAAATCCGTGAGACGGTAGATGCGCTGAAAATGWGCAAAATTAGACAATAATTTTTAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28899</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>122064</contig_pos>
        <strand></strand>
        <context>CTAAAGCCAT[A/C]TATTTTTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTTAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCAT</left_flank>
        <right_flank>TATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAACTGAGCTCACCGAGAGCTTCAAAATGAGCCCAAACACGCCACGATTCGGAGAGATTCAAAATTACGGGTGTGTCGCGGTCGTGCGTCGCGTGTTTTGGGCGAAAAATCAAAATTAACCGATTTGTATCGTGTTCGGGCTCGTTTCAAAGCTCACAATCTCACAAATCTGGAAATTTGGGCTTTCTGGCTTTTTAGGCCGGTCTGGGCTCTTTTTGAGCCAATTTTCATCACATTTCCAGATATTTCAGCTTGATGTTTCGGGATTTTTAAGCTCGAAATTTTGAGAAAAACTACTTACTAATGAAAACTGAGCGAATGACTAGTTTTTGGTTTGAAGAACATTCGTGCGAGCAGTGCAGCACATTGTACATGCGAGAATGTCGCTGATTCGACAAAATCCGTGAGACGGTAGATGCGCTGAAAATGTGCAAAATTAGACAATAATTTTTAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAA</canonical>
            <polymorphic>TTGAACTGAGCTCACCGAGAGCTTCAAAATGAGCCCAAACACGCCACGATTCGGAGAGATTCAAAATTACGGGTGTGTCGCGGTCGTGCGTCGCGTGTTTTGGGCGAAAAATCAAAATTAACCGATTTGTATCGTGTTCGGGCTCGTTTCAAAGCTCACAATCTCACAAATCTGGAAATTTGGGCTTTCTGGCTTTTTAGGCCGGTCTGGGCTCTTTTTGAGCCAATTTTCATCACATTTCCAGATATTTCAGCTTGATGTTTCGGGATTTTTAAGCTCGAAATTTTGAGAAAAACTACTTACTAATGAAAACTGAGCGAATGACTAGTTTTTGGTTTGAAGAACATTCGTGCGAGCAGTGCAGCACATTGTACATGCGAGAATGTCGCTGATTCGACAAAATCCGTGAGACGGTAGATGCGCTGAAAATGTGCAAAATTAGACAATAATTTTTAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATMTATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCCGTGAGACGGTAGAT</pcr_primer_p1>
		<pcr_primer_p2>TAGCTAATTTTGGGCTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>630</pcr_amplicon_size>
		<canonical_amplicon>AAATCCGTGAGACGGTAGATGCGCTGAAAATGTGCAAAATTAGACAATAATTTTTAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACAC</canonical_amplicon>
		<polymorphic_amplicon>AAATCCGTGAGACGGTAGATGCGCTGAAAATGTGCAAAATTAGACAATAATTTTTAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATMTATTTTTGAACCGGAAACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28900</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>122090</contig_pos>
        <strand></strand>
        <context>AACACCTGGA[C/G]AGTGTYCTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACACCTGGA</left_flank>
        <right_flank>AGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATGAGCCCAAACACGCCACGATTCGGAGAGATTCAAAATTACGGGTGTGTCGCGGTCGTGCGTCGCGTGTTTTGGGCGAAAAATCAAAATTAACCGATTTGTATCGTGTTCGGGCTCGTTTCAAAGCTCACAATCTCACAAATCTGGAAATTTGGGCTTTCTGGCTTTTTAGGCCGGTCTGGGCTCTTTTTGAGCCAATTTTCATCACATTTCCAGATATTTCAGCTTGATGTTTCGGGATTTTTAAGCTCGAAATTTTGAGAAAAACTACTTACTAATGAAAACTGAGCGAATGACTAGTTTTTGGTTTGAAGAACATTCGTGCGAGCAGTGCAGCACATTGTACATGCGAGAATGTCGCTGATTCGACAAAATCCGTGAGACGGTAGATGCGCTGAAAATGTGCAAAATTAGACAATAATTTTTAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAG</canonical>
            <polymorphic>AAATGAGCCCAAACACGCCACGATTCGGAGAGATTCAAAATTACGGGTGTGTCGCGGTCGTGCGTCGCGTGTTTTGGGCGAAAAATCAAAATTAACCGATTTGTATCGTGTTCGGGCTCGTTTCAAAGCTCACAATCTCACAAATCTGGAAATTTGGGCTTTCTGGCTTTTTAGGCCGGTCTGGGCTCTTTTTGAGCCAATTTTCATCACATTTCCAGATATTTCAGCTTGATGTTTCGGGATTTTTAAGCTCGAAATTTTGAGAAAAACTACTTACTAATGAAAACTGAGCGAATGACTAGTTTTTGGTTTGAAGAACATTCGTGCGAGCAGTGCAGCACATTGTACATGCGAGAATGTCGCTGATTCGACAAAATCCGTGAGACGGTAGATGCGCTGAAAATGTGCAAAATTAGACAATAATTTTTAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACACCTGGASAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNGTC</site>
                <isoschizomers>
                    <enzyme>AspI</enzyme>
                    <enzyme>PflFI</enzyme>
                    <enzyme>PsyI</enzyme>
                    <enzyme>TelI</enzyme>
                    <enzyme>Tth111I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>499 387 114</canonical_bands>
                <polymorphic_bands>613 387</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGCTAATTTTGGGCTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>TAGCTAATTTTGGGCTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>576</pcr_amplicon_size>
		<canonical_amplicon>TAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGG</canonical_amplicon>
		<polymorphic_amplicon>TAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACACCTGGASAGTGTCCTATGCCATTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28901</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>122096</contig_pos>
        <strand></strand>
        <context>TGGASAGTGT[C/T]CTATgccatt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACACCTGGACAGTGT</left_flank>
        <right_flank>CTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATAT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCCAAACACGCCACGATTCGGAGAGATTCAAAATTACGGGTGTGTCGCGGTCGTGCGTCGCGTGTTTTGGGCGAAAAATCAAAATTAACCGATTTGTATCGTGTTCGGGCTCGTTTCAAAGCTCACAATCTCACAAATCTGGAAATTTGGGCTTTCTGGCTTTTTAGGCCGGTCTGGGCTCTTTTTGAGCCAATTTTCATCACATTTCCAGATATTTCAGCTTGATGTTTCGGGATTTTTAAGCTCGAAATTTTGAGAAAAACTACTTACTAATGAAAACTGAGCGAATGACTAGTTTTTGGTTTGAAGAACATTCGTGCGAGCAGTGCAGCACATTGTACATGCGAGAATGTCGCTGATTCGACAAAATCCGTGAGACGGTAGATGCGCTGAAAATGTGCAAAATTAGACAATAATTTTTAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTAACA</canonical>
            <polymorphic>GCCCAAACACGCCACGATTCGGAGAGATTCAAAATTACGGGTGTGTCGCGGTCGTGCGTCGCGTGTTTTGGGCGAAAAATCAAAATTAACCGATTTGTATCGTGTTCGGGCTCGTTTCAAAGCTCACAATCTCACAAATCTGGAAATTTGGGCTTTCTGGCTTTTTAGGCCGGTCTGGGCTCTTTTTGAGCCAATTTTCATCACATTTCCAGATATTTCAGCTTGATGTTTCGGGATTTTTAAGCTCGAAATTTTGAGAAAAACTACTTACTAATGAAAACTGAGCGAATGACTAGTTTTTGGTTTGAAGAACATTCGTGCGAGCAGTGCAGCACATTGTACATGCGAGAATGTCGCTGATTCGACAAAATCCGTGAGACGGTAGATGCGCTGAAAATGTGCAAAATTAGACAATAATTTTTAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACACCTGGACAGTGTYCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNGTC</site>
                <isoschizomers>
                    <enzyme>AspI</enzyme>
                    <enzyme>PflFI</enzyme>
                    <enzyme>PsyI</enzyme>
                    <enzyme>TelI</enzyme>
                    <enzyme>Tth111I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGCTAATTTTGGGCTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>TAGCTAATTTTGGGCTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>576</pcr_amplicon_size>
		<canonical_amplicon>TAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTA</canonical_amplicon>
		<polymorphic_amplicon>TAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACACCTGGACAGTGTYCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28902</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>122299</contig_pos>
        <strand></strand>
        <context>attttgtgca[G/A]aaatccatgt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCA</left_flank>
        <right_flank>AAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTCCAGATATTTCAGCTTGATGTTTCGGGATTTTTAAGCTCGAAATTTTGAGAAAAACTACTTACTAATGAAAACTGAGCGAATGACTAGTTTTTGGTTTGAAGAACATTCGTGCGAGCAGTGCAGCACATTGTACATGCGAGAATGTCGCTGATTCGACAAAATCCGTGAGACGGTAGATGCGCTGAAAATGTGCAAAATTAGACAATAATTTTTAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTAACACACCACTAAGGCTTCCATTTCGGTCGGTCGAAAATCGCCGACCGCCGACCGACCACCGACCCAACCGACCGACAGCCGACCGAGTTGACCGATCGGCCGGCGCGCCAACCGATTTCGTGCCTTTGCGCCAGGGGTGGGAGAAAAACCTTGACGTTTTGCAAAATTTTCTCGCTTCTTGTGCAAAACGAAATTAAAGGGGGACT</canonical>
            <polymorphic>CATTTCCAGATATTTCAGCTTGATGTTTCGGGATTTTTAAGCTCGAAATTTTGAGAAAAACTACTTACTAATGAAAACTGAGCGAATGACTAGTTTTTGGTTTGAAGAACATTCGTGCGAGCAGTGCAGCACATTGTACATGCGAGAATGTCGCTGATTCGACAAAATCCGTGAGACGGTAGATGCGCTGAAAATGTGCAAAATTAGACAATAATTTTTAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCARAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTAACACACCACTAAGGCTTCCATTTCGGTCGGTCGAAAATCGCCGACCGCCGACCGACCACCGACCCAACCGACCGACAGCCGACCGAGTTGACCGATCGGCCGGCGCGCCAACCGATTTCGTGCCTTTGCGCCAGGGGTGGGAGAAAAACCTTGACGTTTTGCAAAATTTTCTCGCTTCTTGTGCAAAACGAAATTAAAGGGGGACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTTGAACCGGAAACAC</pcr_primer_p1>
		<pcr_primer_p2>TAGCTAATTTTGGGCTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>529</pcr_amplicon_size>
		<canonical_amplicon>TATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTA</canonical_amplicon>
		<polymorphic_amplicon>TATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCARAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28903</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>122408</contig_pos>
        <strand></strand>
        <context>ctagcggcca[T/G]gtgtgagttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCA</left_flank>
        <right_flank>GTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTCGTGCGAGCAGTGCAGCACATTGTACATGCGAGAATGTCGCTGATTCGACAAAATCCGTGAGACGGTAGATGCGCTGAAAATGTGCAAAATTAGACAATAATTTTTAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTAACACACCACTAAGGCTTCCATTTCGGTCGGTCGAAAATCGCCGACCGCCGACCGACCACCGACCCAACCGACCGACAGCCGACCGAGTTGACCGATCGGCCGGCGCGCCAACCGATTTCGTGCCTTTGCGCCAGGGGTGGGAGAAAAACCTTGACGTTTTGCAAAATTTTCTCGCTTCTTGTGCAAAACGAAATTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTGTTAAAAGCCAAAAAAAGGTGCCGCCGGGGGCCTTTTTTTCAAGTCGCCGACAGTGTTTTTTAAGTTTTTTACCTGCC</canonical>
            <polymorphic>CATTCGTGCGAGCAGTGCAGCACATTGTACATGCGAGAATGTCGCTGATTCGACAAAATCCGTGAGACGGTAGATGCGCTGAAAATGTGCAAAATTAGACAATAATTTTTAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAKGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTAACACACCACTAAGGCTTCCATTTCGGTCGGTCGAAAATCGCCGACCGCCGACCGACCACCGACCCAACCGACCGACAGCCGACCGAGTTGACCGATCGGCCGGCGCGCCAACCGATTTCGTGCCTTTGCGCCAGGGGTGGGAGAAAAACCTTGACGTTTTGCAAAATTTTCTCGCTTCTTGTGCAAAACGAAATTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTGTTAAAAGCCAAAAAAAGGTGCCGCCGGGGGCCTTTTTTTCAAGTCGCCGACAGTGTTTTTTAAGTTTTTTACCTGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 367 101 30</canonical_bands>
                <polymorphic_bands>603 367 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTTTTGAACCGGAAACAC</pcr_primer_p1>
		<pcr_primer_p2>TAGCTAATTTTGGGCTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>529</pcr_amplicon_size>
		<canonical_amplicon>TATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTA</canonical_amplicon>
		<polymorphic_amplicon>TATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAKGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28904</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>122461</contig_pos>
        <strand></strand>
        <context>ttcgaatttt[T/C]attgattttc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTT</left_flank>
        <right_flank>ATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAATCCGTGAGACGGTAGATGCGCTGAAAATGTGCAAAATTAGACAATAATTTTTAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTAACACACCACTAAGGCTTCCATTTCGGTCGGTCGAAAATCGCCGACCGCCGACCGACCACCGACCCAACCGACCGACAGCCGACCGAGTTGACCGATCGGCCGGCGCGCCAACCGATTTCGTGCCTTTGCGCCAGGGGTGGGAGAAAAACCTTGACGTTTTGCAAAATTTTCTCGCTTCTTGTGCAAAACGAAATTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTGTTAAAAGCCAAAAAAAGGTGCCGCCGGGGGCCTTTTTTTCAAGTCGCCGACAGTGTTTTTTAAGTTTTTTACCTGCCGGACATGAAATTGAAAAAAATCCGGAAAATTTGCCACATAGGAAAGGCGCCCA</canonical>
            <polymorphic>CAAAATCCGTGAGACGGTAGATGCGCTGAAAATGTGCAAAATTAGACAATAATTTTTAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTYATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTAACACACCACTAAGGCTTCCATTTCGGTCGGTCGAAAATCGCCGACCGCCGACCGACCACCGACCCAACCGACCGACAGCCGACCGAGTTGACCGATCGGCCGGCGCGCCAACCGATTTCGTGCCTTTGCGCCAGGGGTGGGAGAAAAACCTTGACGTTTTGCAAAATTTTCTCGCTTCTTGTGCAAAACGAAATTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTGTTAAAAGCCAAAAAAAGGTGCCGCCGGGGGCCTTTTTTTCAAGTCGCCGACAGTGTTTTTTAAGTTTTTTACCTGCCGGACATGAAATTGAAAAAAATCCGGAAAATTTGCCACATAGGAAAGGCGCCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTTGAACCGGAAACAC</pcr_primer_p1>
		<pcr_primer_p2>TAGCTAATTTTGGGCTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>529</pcr_amplicon_size>
		<canonical_amplicon>TATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTA</canonical_amplicon>
		<polymorphic_amplicon>TATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTYATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28905</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>122474</contig_pos>
        <strand></strand>
        <context>tgattttcag[G/T]gttttctcwg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAG</left_flank>
        <right_flank>GTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGGTAGATGCGCTGAAAATGTGCAAAATTAGACAATAATTTTTAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTAACACACCACTAAGGCTTCCATTTCGGTCGGTCGAAAATCGCCGACCGCCGACCGACCACCGACCCAACCGACCGACAGCCGACCGAGTTGACCGATCGGCCGGCGCGCCAACCGATTTCGTGCCTTTGCGCCAGGGGTGGGAGAAAAACCTTGACGTTTTGCAAAATTTTCTCGCTTCTTGTGCAAAACGAAATTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTGTTAAAAGCCAAAAAAAGGTGCCGCCGGGGGCCTTTTTTTCAAGTCGCCGACAGTGTTTTTTAAGTTTTTTACCTGCCGGACATGAAATTGAAAAAAATCCGGAAAATTTGCCACATAGGAAAGGCGCCCACTGCCGTGGCCTA</canonical>
            <polymorphic>ACGGTAGATGCGCTGAAAATGTGCAAAATTAGACAATAATTTTTAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGKGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTAACACACCACTAAGGCTTCCATTTCGGTCGGTCGAAAATCGCCGACCGCCGACCGACCACCGACCCAACCGACCGACAGCCGACCGAGTTGACCGATCGGCCGGCGCGCCAACCGATTTCGTGCCTTTGCGCCAGGGGTGGGAGAAAAACCTTGACGTTTTGCAAAATTTTCTCGCTTCTTGTGCAAAACGAAATTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTGTTAAAAGCCAAAAAAAGGTGCCGCCGGGGGCCTTTTTTTCAAGTCGCCGACAGTGTTTTTTAAGTTTTTTACCTGCCGGACATGAAATTGAAAAAAATCCGGAAAATTTGCCACATAGGAAAGGCGCCCACTGCCGTGGCCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTTGAACCGGAAACAC</pcr_primer_p1>
		<pcr_primer_p2>TAGCTAATTTTGGGCTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>529</pcr_amplicon_size>
		<canonical_amplicon>TATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTA</canonical_amplicon>
		<polymorphic_amplicon>TATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGKGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28906</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>122483</contig_pos>
        <strand></strand>
        <context>gkgttttctc[T/A]gatttttgtc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTC</left_flank>
        <right_flank>GATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGCTGAAAATGTGCAAAATTAGACAATAATTTTTAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTAACACACCACTAAGGCTTCCATTTCGGTCGGTCGAAAATCGCCGACCGCCGACCGACCACCGACCCAACCGACCGACAGCCGACCGAGTTGACCGATCGGCCGGCGCGCCAACCGATTTCGTGCCTTTGCGCCAGGGGTGGGAGAAAAACCTTGACGTTTTGCAAAATTTTCTCGCTTCTTGTGCAAAACGAAATTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTGTTAAAAGCCAAAAAAAGGTGCCGCCGGGGGCCTTTTTTTCAAGTCGCCGACAGTGTTTTTTAAGTTTTTTACCTGCCGGACATGAAATTGAAAAAAATCCGGAAAATTTGCCACATAGGAAAGGCGCCCACTGCCGTGGCCTAGGTTTCTCA</canonical>
            <polymorphic>GCGCTGAAAATGTGCAAAATTAGACAATAATTTTTAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCWGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTAACACACCACTAAGGCTTCCATTTCGGTCGGTCGAAAATCGCCGACCGCCGACCGACCACCGACCCAACCGACCGACAGCCGACCGAGTTGACCGATCGGCCGGCGCGCCAACCGATTTCGTGCCTTTGCGCCAGGGGTGGGAGAAAAACCTTGACGTTTTGCAAAATTTTCTCGCTTCTTGTGCAAAACGAAATTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTGTTAAAAGCCAAAAAAAGGTGCCGCCGGGGGCCTTTTTTTCAAGTCGCCGACAGTGTTTTTTAAGTTTTTTACCTGCCGGACATGAAATTGAAAAAAATCCGGAAAATTTGCCACATAGGAAAGGCGCCCACTGCCGTGGCCTAGGTTTCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTTGAACCGGAAACAC</pcr_primer_p1>
		<pcr_primer_p2>TAGCTAATTTTGGGCTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>529</pcr_amplicon_size>
		<canonical_amplicon>TATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTA</canonical_amplicon>
		<polymorphic_amplicon>TATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCWGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28907</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>122497</contig_pos>
        <strand></strand>
        <context>ttttgtcagg[G/T]tttttsatac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGG</left_flank>
        <right_flank>TTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAATTAGACAATAATTTTTAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTAACACACCACTAAGGCTTCCATTTCGGTCGGTCGAAAATCGCCGACCGCCGACCGACCACCGACCCAACCGACCGACAGCCGACCGAGTTGACCGATCGGCCGGCGCGCCAACCGATTTCGTGCCTTTGCGCCAGGGGTGGGAGAAAAACCTTGACGTTTTGCAAAATTTTCTCGCTTCTTGTGCAAAACGAAATTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTGTTAAAAGCCAAAAAAAGGTGCCGCCGGGGGCCTTTTTTTCAAGTCGCCGACAGTGTTTTTTAAGTTTTTTACCTGCCGGACATGAAATTGAAAAAAATCCGGAAAATTTGCCACATAGGAAAGGCGCCCACTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGT</canonical>
            <polymorphic>CAAAATTAGACAATAATTTTTAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGKTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTAACACACCACTAAGGCTTCCATTTCGGTCGGTCGAAAATCGCCGACCGCCGACCGACCACCGACCCAACCGACCGACAGCCGACCGAGTTGACCGATCGGCCGGCGCGCCAACCGATTTCGTGCCTTTGCGCCAGGGGTGGGAGAAAAACCTTGACGTTTTGCAAAATTTTCTCGCTTCTTGTGCAAAACGAAATTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTGTTAAAAGCCAAAAAAAGGTGCCGCCGGGGGCCTTTTTTTCAAGTCGCCGACAGTGTTTTTTAAGTTTTTTACCTGCCGGACATGAAATTGAAAAAAATCCGGAAAATTTGCCACATAGGAAAGGCGCCCACTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTTGAACCGGAAACAC</pcr_primer_p1>
		<pcr_primer_p2>TAGCTAATTTTGGGCTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>529</pcr_amplicon_size>
		<canonical_amplicon>TATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTA</canonical_amplicon>
		<polymorphic_amplicon>TATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGKTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28908</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>122503</contig_pos>
        <strand></strand>
        <context>caggkttttt[C/G]atacamctgg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTT</left_flank>
        <right_flank>ATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGACAATAATTTTTAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTAACACACCACTAAGGCTTCCATTTCGGTCGGTCGAAAATCGCCGACCGCCGACCGACCACCGACCCAACCGACCGACAGCCGACCGAGTTGACCGATCGGCCGGCGCGCCAACCGATTTCGTGCCTTTGCGCCAGGGGTGGGAGAAAAACCTTGACGTTTTGCAAAATTTTCTCGCTTCTTGTGCAAAACGAAATTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTGTTAAAAGCCAAAAAAAGGTGCCGCCGGGGGCCTTTTTTTCAAGTCGCCGACAGTGTTTTTTAAGTTTTTTACCTGCCGGACATGAAATTGAAAAAAATCCGGAAAATTTGCCACATAGGAAAGGCGCCCACTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCG</canonical>
            <polymorphic>TAGACAATAATTTTTAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTSATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTAACACACCACTAAGGCTTCCATTTCGGTCGGTCGAAAATCGCCGACCGCCGACCGACCACCGACCCAACCGACCGACAGCCGACCGAGTTGACCGATCGGCCGGCGCGCCAACCGATTTCGTGCCTTTGCGCCAGGGGTGGGAGAAAAACCTTGACGTTTTGCAAAATTTTCTCGCTTCTTGTGCAAAACGAAATTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTGTTAAAAGCCAAAAAAAGGTGCCGCCGGGGGCCTTTTTTTCAAGTCGCCGACAGTGTTTTTTAAGTTTTTTACCTGCCGGACATGAAATTGAAAAAAATCCGGAAAATTTGCCACATAGGAAAGGCGCCCACTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTTGAACCGGAAACAC</pcr_primer_p1>
		<pcr_primer_p2>TAGCTAATTTTGGGCTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>529</pcr_amplicon_size>
		<canonical_amplicon>TATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTA</canonical_amplicon>
		<polymorphic_amplicon>TATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTSATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28909</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>122509</contig_pos>
        <strand></strand>
        <context>ttttsataca[C/A]ctgggaggaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACA</left_flank>
        <right_flank>CTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAATTTTTAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTAACACACCACTAAGGCTTCCATTTCGGTCGGTCGAAAATCGCCGACCGCCGACCGACCACCGACCCAACCGACCGACAGCCGACCGAGTTGACCGATCGGCCGGCGCGCCAACCGATTTCGTGCCTTTGCGCCAGGGGTGGGAGAAAAACCTTGACGTTTTGCAAAATTTTCTCGCTTCTTGTGCAAAACGAAATTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTGTTAAAAGCCAAAAAAAGGTGCCGCCGGGGGCCTTTTTTTCAAGTCGCCGACAGTGTTTTTTAAGTTTTTTACCTGCCGGACATGAAATTGAAAAAAATCCGGAAAATTTGCCACATAGGAAAGGCGCCCACTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCA</canonical>
            <polymorphic>ATAATTTTTAGCTAATTTTGGGCTCTTTTGCCCCGAATTTCGGACTAAAGCCATATATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACAMCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTAACACACCACTAAGGCTTCCATTTCGGTCGGTCGAAAATCGCCGACCGCCGACCGACCACCGACCCAACCGACCGACAGCCGACCGAGTTGACCGATCGGCCGGCGCGCCAACCGATTTCGTGCCTTTGCGCCAGGGGTGGGAGAAAAACCTTGACGTTTTGCAAAATTTTCTCGCTTCTTGTGCAAAACGAAATTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTGTTAAAAGCCAAAAAAAGGTGCCGCCGGGGGCCTTTTTTTCAAGTCGCCGACAGTGTTTTTTAAGTTTTTTACCTGCCGGACATGAAATTGAAAAAAATCCGGAAAATTTGCCACATAGGAAAGGCGCCCACTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>425 215 145 131 76 8</canonical_bands>
                <polymorphic_bands>640 145 131 76 8</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>500 215 131 110 28 10 6</canonical_bands>
                <polymorphic_bands>715 131 110 28 10 6</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>425 284 215 76</canonical_bands>
                <polymorphic_bands>640 284 76</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>202 95 89 88 74 64 58 55 50 44 35 26 20 17 17 16 14 11 10 8 3 2 2</canonical_bands>
                <polymorphic_bands>202 183 89 74 64 58 55 50 44 35 26 20 17 17 16 14 11 10 8 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTTTTGAACCGGAAACAC</pcr_primer_p1>
		<pcr_primer_p2>TAGCTAATTTTGGGCTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>529</pcr_amplicon_size>
		<canonical_amplicon>TATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACACCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTA</canonical_amplicon>
		<polymorphic_amplicon>TATTTTTGAACCGGAAACACCTGGACAGTGTCCTATGCCATTTTGGACTATTTCTAACTAATTTTGAGCCAATCTGACATATTTTAGTATAATTGAAGCGGATTTTAGAACTATTTACCATTAATTTGAGCCAGATTTTTTACATAAAATTTCAGGCCAGCAATTTTGATTTTCAGCTTTTTTGGACTCATTTTTGGACCAATTTTTACTAATTTTATTGCTTTATTTTGTGCAGAAATCCATGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCATGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGGGTTTTCTCTGATTTTTGTCAGGGTTTTTCATACAMCTGGGAGGAAATTAACAGAAACATTTAGAAATCTTCAAAAGACATTAGTCCGAAATTCGGGGCAAAAGAGCCCAAAATTAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28910</snp_id>
        <super_contig>c004001794.Contig1</super_contig>
        <contig_pos>139314</contig_pos>
        <strand>+</strand>
        <context>TTTCTACAGT[A/G]ATCCCCTCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCTGCTCGATTTTCATCAGCCAAGAACTACAGTACGCTCTTTCTACAGT</left_flank>
        <right_flank>ATCCCCTCAAAGCCCCTATTTGGAAGACGAAAATCTACAGTATTCCAGCT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTATTCTGGCTACCGTAACCTTCAAGAGCTACAGTATCCCGCTTCGCTACAGTAATCTTCTTGTGGACGACGGAAACTCTAGCTACAGTAATCCCCTCCAAAACAGTCCAAATTGCTGTATCCAATAAGCCTTTTGGTAGACGAAAAACTACAGTATTCCTGCTGAAACTTCATCTCCAAGAACAAGAACTACAGTACCATTTTCTACAGTAATCCCCTCAAAGCCCTATTTTGGAAGACGAAAATCTACAGTATTCCAACTACAGTAATCCTACCGTAATCCCTTTAAAACAGACCACCTCTGAAAACTACAGTATTCCGGCTACAATAGTCTCCAAGTACTACAGTACCCCTTTAATCCCTTCGAAATTGGTCTGAACCACCGCTATCTCCACTACAGTAATCCTTTGAAAACTGCAGTATTGAATCTACAGTAATCCTACCGTATTCCTGCTCGATTTTCATCAGCCAAGAACTACAGTACGCTCTTTCTACAGTGATCCCCTCAAAGCCCCTATTTGGAAGACGAAAATCTACAGTATTCCAGCTACAGTAATCCAATCCTCAAAATTGGCCTAAACTAGCGTATTCTCACTTCCCCGCAACCCCATTCAAACTACCGTAATCCCGCAATGTGGTCCCCTTCCATCCAACGAATCATCATAACTACCGTAATCCTACTATTCCTAATCAACTTCTTCTTTCTAAAAAGGTCCCTAAAACCGTCTTCCAAAGGGACGCGAGATTTAGAAGACGTCGAAATTTTCAATTTCATCGAAGAAATCAATAATTTGTGGTTTGACGAGGGAGAGGAGAAACGATACGAGTTGTATAGGAATATTCCAGCAGGCTCAGCAGTTTCCAGTAAGCTAGCGGTGAGTCTTACTGTAGATTGAACTACAAGATTACTGTACCTTACTAGTTAGATAGTCCTGATTAGCCTAATTAAAAAGCTAATTTGCCAGGGATTACTGTAGCTATTACAAGCCATCACAGTAC</canonical>
            <polymorphic>AGTATTCTGGCTACCGTAACCTTCAAGAGCTACAGTATCCCGCTTCGCTACAGTAATCTTCTTGTGGACGACGGAAACTCTAGCTACAGTAATCCCCTCCAAAACAGTCCAAATTGCTGTATCCAATAAGCCTTTTGGTAGACGAAAAACTACAGTATTCCTGCTGAAACTTCATCTCCAAGAACAAGAACTACAGTACCATTTTCTACAGTAATCCCCTCAAAGCCCTATTTTGGAAGACGAAAATCTACAGTATTCCAACTACAGTAATCCTACCGTAATCCCTTTAAAACAGACCACCTCTGAAAACTACAGTATTCCGGCTACAATAGTCTCCAAGTACTACAGTACCCCTTTAATCCCTTCGAAATTGGTCTGAACCACCGCTATCTCCACTACAGTAATCCTTTGAAAACTGCAGTATTGAATCTACAGTAATCCTACCGTATTCCTGCTCGATTTTCATCAGCCAAGAACTACAGTACGCTCTTTCTACAGTRATCCCCTCAAAGCCCCTATTTGGAAGACGAAAATCTACAGTATTCCAGCTACAGTAATCCAATCCTCAAAATTGGCCTAAACTAGCGTATTCTCACTTCCCCGCAACCCCATTCAAACTACCGTAATCCCGCAATGTGGTCCCCTTCCATCCAACGAATCATCATAACTACCGTAATCCTACTATTCCTAATCAACTTCTTCTTTCTAAAAAGGTCCCTAAAACCGTCTTCCAAAGGGACGCGAGATTTAGAAGACGTCGAAATTTTCAATTTCATCGAAGAAATCAATAATTTGTGGTTTGACGAGGGAGAGGAGAAACGATACGAGTTGTATAGGAATATTCCAGCAGGCTCAGCAGTTTCCAGTAAGCTAGCGGTGAGTCTTACTGTAGATTGAACTACAAGATTACTGTACCTTACTAGTTAGATAGTCCTGATTAGCCTAATTAAAAAGCTAATTTGCCAGGGATTACTGTAGCTATTACAAGCCATCACAGTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>233 159 115 105 95 84 82 66 43 12 6</canonical_bands>
                <polymorphic_bands>233 200 159 115 84 82 66 43 12 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGCTACAATAGTCTCCAAGTA</pcr_primer_p1>
		<pcr_primer_p2>AATTTTGAGGATTGGATTACTGT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CGGCTACAATAGTCTCCAAGTACTACAGTACCCCTTTAATCCCTTCGAAATTGGTCTGAACCACCGCTATCTCCACTACAGTAATCCTTTGAAAACTGCAGTATTGAATCTACAGTAATCCTACCGTATTCCTGCTCGATTTTCATCAGCCAAGAACTACAGTACGCTCTTTCTACAGTGATCCCCTCAAAGCCCCTATTTGGAAGACGAAAATCTACAGTATTCCAGCTACAGTAATCCAATCCTCAAAATT</canonical_amplicon>
		<polymorphic_amplicon>CGGCTACAATAGTCTCCAAGTACTACAGTACCCCTTTAATCCCTTCGAAATTGGTCTGAACCACCGCTATCTCCACTACAGTAATCCTTTGAAAACTGCAGTATTGAATCTACAGTAATCCTACCGTATTCCTGCTCGATTTTCATCAGCCAAGAACTACAGTACGCTCTTTCTACAGTRATCCCCTCAAAGCCCCTATTTGGAAGACGAAAATCTACAGTATTCCAGCTACAGTAATCCAATCCTCAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28911</snp_id>
        <super_contig>c004100149.Contig3</super_contig>
        <contig_pos>16402</contig_pos>
        <strand></strand>
        <context>attttacacc[C/A]taaaaattct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GAAGGGCCGGCCCTTCTAATACAGGTTTTACGGTATGTCTATTTTACACC</left_flank>
        <right_flank>TAAAAATTCTCAAAGCGATCGGAAGCTTCCCAGCTGAGCATCAGACTTCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCATTTTGCATTATTTGAACGTCCCTAGTTTTTCAGATAATTGCCGATTTCTGAAAGACACGTTTTTTTCATATTTTTAGTACGAAAACGGCCGTGTCTTTTAGAAAGTGGCCAATAGCTGAAAAACAATAAATTTTCGAAAAATTCTGTGAATTCAAAGTTTTCTATCTACCGTGAAACCTGTATTAGAAGGACCCCTTTAATAGAAGGACCCCTCTAATGGAATGACCCCCAGTAAAGAAGGACCACCTTCACAATAGTCATGAAAGTAAAAAATTTCAGTACGTTTTCAATGAAAAATATTTCGGGAATTCTACAGTTTAATAGAAATCTGTTGAAGAACTACTTTTCCGCTCAAAAACTTGATTAATTTTGGTGAAACTGACAGATTTTCATGACTTTTGAAAATTCTAATTGAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGGGCCGGCCCTTCTAATACAGGTTTTACGGTATGTCTATTTTACACCCTAAAAATTCTCAAAGCGATCGGAAGCTTCCCAGCTGAGCATCAGACTTCTAAGAATGCCAAAAATCAACTGCAAAATTAGTTTTTCTATATATCTTATTGAACGGTACTGTAAGTATGGGAAATTCTGAAAATGTGCTTCAGACCTGTCGCCCCAATTTTTTCAAAATTCCAATTTTCTATTCCCAATCCCTTGTAGCACTTGACCCGTTTTCCCTATGCATTTCATGACATTCTCAAAAAACTACACTGCTTACTTTCCACTTTCACTAGTTACTTTTTCCTTCAAAAACGCCTGAATAGCCGAAAAAGTGGTAACTACGAATATTTAATGATGATGATCTAATGGATTCCCGTTACGGTGTTTTAATTGCCACCACTAGATAATTACCCCCCAATGATTATGTAAGTGAAGCAACGGAGAAAGCTGTTTTTAATGACCACGGCTTTTAGCGTTAGCTGAAAAAATTGTGACTGTGGTTGGTTTTTTCTAAGTTGTCTA</canonical>
            <polymorphic>TGCATTTTGCATTATTTGAACGTCCCTAGTTTTTCAGATAATTGCCGATTTCTGAAAGACACGTTTTTTTCATATTTTTAGTACGAAAACGGCCGTGTCTTTTAGAAAGTGGCCAATAGCTGAAAAACAATAAATTTTCGAAAAATTCTGTGAATTCAAAGTTTTCTATCTACCGTGAAACCTGTATTAGAAGGACCCCTTTAATAGAAGGACCCCTCTAATGGAATGACCCCCAGTAAAGAAGGACCACCTTCACAATAGTCATGAAAGTAAAAAATTTCAGTACGTTTTCAATGAAAAATATTTCGGGAATTCTACAGTTTAATAGAAATCTGTTGAAGAACTACTTTTCCGCTCAAAAACTTGATTAATTTTGGTGAAACTGACAGATTTTCATGACTTTTGAAAATTCTAATTGAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGGGCCGGCCCTTCTAATACAGGTTTTACGGTATGTCTATTTTACACCMTAAAAATTCTCAAAGCGATCGGAAGCTTCCCAGCTGAGCATCAGACTTCTAAGAATGCCAAAAATCAACTGCAAAATTAGTTTTTCTATATATCTTATTGAACGGTACTGTAAGTATGGGAAATTCTGAAAATGTGCTTCAGACCTGTCGCCCCAATTTTTTCAAAATTCCAATTTTCTATTCCCAATCCCTTGTAGCACTTGACCCGTTTTCCCTATGCATTTCATGACATTCTCAAAAAACTACACTGCTTACTTTCCACTTTCACTAGTTACTTTTTCCTTCAAAAACGCCTGAATAGCCGAAAAAGTGGTAACTACGAATATTTAATGATGATGATCTAATGGATTCCCGTTACGGTGTTTTAATTGCCACCACTAGATAATTACCCCCCAATGATTATGTAAGTGAAGCAACGGAGAAAGCTGTTTTTAATGACCACGGCTTTTAGCGTTAGCTGAAAAAATTGTGACTGTGGTTGGTTTTTTCTAAGTTGTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTCACAATAGTCATGAAAGTAA</pcr_primer_p1>
		<pcr_primer_p2>ACATTTTCAGAATTTCCCATACT</pcr_primer_p2>
		<pcr_amplicon_size>386</pcr_amplicon_size>
		<canonical_amplicon>CCTTCACAATAGTCATGAAAGTAAAAAATTTCAGTACGTTTTCAATGAAAAATATTTCGGGAATTCTACAGTTTAATAGAAATCTGTTGAAGAACTACTTTTCCGCTCAAAAACTTGATTAATTTTGGTGAAACTGACAGATTTTCATGACTTTTGAAAATTCTAATTGAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGGGCCGGCCCTTCTAATACAGGTTTTACGGTATGTCTATTTTACACCCTAAAAATTCTCAAAGCGATCGGAAGCTTCCCAGCTGAGCATCAGACTTCTAAGAATGCCAAAAATCAACTGCAAAATTAGTTTTTCTATATATCTTATTGAACGGTACTGTAAGTATGGGAAATTCTGAAAATGT</canonical_amplicon>
		<polymorphic_amplicon>CCTTCACAATAGTCATGAAAGTAAAAAATTTCAGTACGTTTTCAATGAAAAATATTTCGGGAATTCTACAGTTTAATAGAAATCTGTTGAAGAACTACTTTTCCGCTCAAAAACTTGATTAATTTTGGTGAAACTGACAGATTTTCATGACTTTTGAAAATTCTAATTGAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGGGCCGGCCCTTCTAATACAGGTTTTACGGTATGTCTATTTTACACCMTAAAAATTCTCAAAGCGATCGGAAGCTTCCCAGCTGAGCATCAGACTTCTAAGAATGCCAAAAATCAACTGCAAAATTAGTTTTTCTATATATCTTATTGAACGGTACTGTAAGTATGGGAAATTCTGAAAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28912</snp_id>
        <super_contig>c004100149.Contig3</super_contig>
        <contig_pos>16448</contig_pos>
        <strand></strand>
        <context>gagcatcaga[C/A]ttctaaraat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CACCCTAAAAATTCTCAAAGCGATCGGAAGCTTCCCAGCTGAGCATCAGA</left_flank>
        <right_flank>TTCTAAGAATGCCAAAAATCAACTGCAAAATTAGTTTTTCTATATATCTT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTCTGAAAGACACGTTTTTTTCATATTTTTAGTACGAAAACGGCCGTGTCTTTTAGAAAGTGGCCAATAGCTGAAAAACAATAAATTTTCGAAAAATTCTGTGAATTCAAAGTTTTCTATCTACCGTGAAACCTGTATTAGAAGGACCCCTTTAATAGAAGGACCCCTCTAATGGAATGACCCCCAGTAAAGAAGGACCACCTTCACAATAGTCATGAAAGTAAAAAATTTCAGTACGTTTTCAATGAAAAATATTTCGGGAATTCTACAGTTTAATAGAAATCTGTTGAAGAACTACTTTTCCGCTCAAAAACTTGATTAATTTTGGTGAAACTGACAGATTTTCATGACTTTTGAAAATTCTAATTGAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGGGCCGGCCCTTCTAATACAGGTTTTACGGTATGTCTATTTTACACCCTAAAAATTCTCAAAGCGATCGGAAGCTTCCCAGCTGAGCATCAGACTTCTAAGAATGCCAAAAATCAACTGCAAAATTAGTTTTTCTATATATCTTATTGAACGGTACTGTAAGTATGGGAAATTCTGAAAATGTGCTTCAGACCTGTCGCCCCAATTTTTTCAAAATTCCAATTTTCTATTCCCAATCCCTTGTAGCACTTGACCCGTTTTCCCTATGCATTTCATGACATTCTCAAAAAACTACACTGCTTACTTTCCACTTTCACTAGTTACTTTTTCCTTCAAAAACGCCTGAATAGCCGAAAAAGTGGTAACTACGAATATTTAATGATGATGATCTAATGGATTCCCGTTACGGTGTTTTAATTGCCACCACTAGATAATTACCCCCCAATGATTATGTAAGTGAAGCAACGGAGAAAGCTGTTTTTAATGACCACGGCTTTTAGCGTTAGCTGAAAAAATTGTGACTGTGGTTGGTTTTTTCTAAGTTGTCTAGTGTTAAATGGGCTCGTATACACACTTAGCAATGGGCCCACAACGG</canonical>
            <polymorphic>GATTTCTGAAAGACACGTTTTTTTCATATTTTTAGTACGAAAACGGCCGTGTCTTTTAGAAAGTGGCCAATAGCTGAAAAACAATAAATTTTCGAAAAATTCTGTGAATTCAAAGTTTTCTATCTACCGTGAAACCTGTATTAGAAGGACCCCTTTAATAGAAGGACCCCTCTAATGGAATGACCCCCAGTAAAGAAGGACCACCTTCACAATAGTCATGAAAGTAAAAAATTTCAGTACGTTTTCAATGAAAAATATTTCGGGAATTCTACAGTTTAATAGAAATCTGTTGAAGAACTACTTTTCCGCTCAAAAACTTGATTAATTTTGGTGAAACTGACAGATTTTCATGACTTTTGAAAATTCTAATTGAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGGGCCGGCCCTTCTAATACAGGTTTTACGGTATGTCTATTTTACACCCTAAAAATTCTCAAAGCGATCGGAAGCTTCCCAGCTGAGCATCAGAMTTCTAAGAATGCCAAAAATCAACTGCAAAATTAGTTTTTCTATATATCTTATTGAACGGTACTGTAAGTATGGGAAATTCTGAAAATGTGCTTCAGACCTGTCGCCCCAATTTTTTCAAAATTCCAATTTTCTATTCCCAATCCCTTGTAGCACTTGACCCGTTTTCCCTATGCATTTCATGACATTCTCAAAAAACTACACTGCTTACTTTCCACTTTCACTAGTTACTTTTTCCTTCAAAAACGCCTGAATAGCCGAAAAAGTGGTAACTACGAATATTTAATGATGATGATCTAATGGATTCCCGTTACGGTGTTTTAATTGCCACCACTAGATAATTACCCCCCAATGATTATGTAAGTGAAGCAACGGAGAAAGCTGTTTTTAATGACCACGGCTTTTAGCGTTAGCTGAAAAAATTGTGACTGTGGTTGGTTTTTTCTAAGTTGTCTAGTGTTAAATGGGCTCGTATACACACTTAGCAATGGGCCCACAACGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTCACAATAGTCATGAAAGTAA</pcr_primer_p1>
		<pcr_primer_p2>ACATTTTCAGAATTTCCCATACT</pcr_primer_p2>
		<pcr_amplicon_size>386</pcr_amplicon_size>
		<canonical_amplicon>CCTTCACAATAGTCATGAAAGTAAAAAATTTCAGTACGTTTTCAATGAAAAATATTTCGGGAATTCTACAGTTTAATAGAAATCTGTTGAAGAACTACTTTTCCGCTCAAAAACTTGATTAATTTTGGTGAAACTGACAGATTTTCATGACTTTTGAAAATTCTAATTGAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGGGCCGGCCCTTCTAATACAGGTTTTACGGTATGTCTATTTTACACCCTAAAAATTCTCAAAGCGATCGGAAGCTTCCCAGCTGAGCATCAGACTTCTAAGAATGCCAAAAATCAACTGCAAAATTAGTTTTTCTATATATCTTATTGAACGGTACTGTAAGTATGGGAAATTCTGAAAATGT</canonical_amplicon>
		<polymorphic_amplicon>CCTTCACAATAGTCATGAAAGTAAAAAATTTCAGTACGTTTTCAATGAAAAATATTTCGGGAATTCTACAGTTTAATAGAAATCTGTTGAAGAACTACTTTTCCGCTCAAAAACTTGATTAATTTTGGTGAAACTGACAGATTTTCATGACTTTTGAAAATTCTAATTGAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGGGCCGGCCCTTCTAATACAGGTTTTACGGTATGTCTATTTTACACCCTAAAAATTCTCAAAGCGATCGGAAGCTTCCCAGCTGAGCATCAGAMTTCTAAGAATGCCAAAAATCAACTGCAAAATTAGTTTTTCTATATATCTTATTGAACGGTACTGTAAGTATGGGAAATTCTGAAAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28913</snp_id>
        <super_contig>c004100149.Contig3</super_contig>
        <contig_pos>16455</contig_pos>
        <strand></strand>
        <context>agamttctaa[G/A]aatgccaaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAATTCTCAAAGCGATCGGAAGCTTCCCAGCTGAGCATCAGACTTCTAA</left_flank>
        <right_flank>AATGCCAAAAATCAACTGCAAAATTAGTTTTTCTATATATCTTATTGAAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAGACACGTTTTTTTCATATTTTTAGTACGAAAACGGCCGTGTCTTTTAGAAAGTGGCCAATAGCTGAAAAACAATAAATTTTCGAAAAATTCTGTGAATTCAAAGTTTTCTATCTACCGTGAAACCTGTATTAGAAGGACCCCTTTAATAGAAGGACCCCTCTAATGGAATGACCCCCAGTAAAGAAGGACCACCTTCACAATAGTCATGAAAGTAAAAAATTTCAGTACGTTTTCAATGAAAAATATTTCGGGAATTCTACAGTTTAATAGAAATCTGTTGAAGAACTACTTTTCCGCTCAAAAACTTGATTAATTTTGGTGAAACTGACAGATTTTCATGACTTTTGAAAATTCTAATTGAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGGGCCGGCCCTTCTAATACAGGTTTTACGGTATGTCTATTTTACACCCTAAAAATTCTCAAAGCGATCGGAAGCTTCCCAGCTGAGCATCAGACTTCTAAGAATGCCAAAAATCAACTGCAAAATTAGTTTTTCTATATATCTTATTGAACGGTACTGTAAGTATGGGAAATTCTGAAAATGTGCTTCAGACCTGTCGCCCCAATTTTTTCAAAATTCCAATTTTCTATTCCCAATCCCTTGTAGCACTTGACCCGTTTTCCCTATGCATTTCATGACATTCTCAAAAAACTACACTGCTTACTTTCCACTTTCACTAGTTACTTTTTCCTTCAAAAACGCCTGAATAGCCGAAAAAGTGGTAACTACGAATATTTAATGATGATGATCTAATGGATTCCCGTTACGGTGTTTTAATTGCCACCACTAGATAATTACCCCCCAATGATTATGTAAGTGAAGCAACGGAGAAAGCTGTTTTTAATGACCACGGCTTTTAGCGTTAGCTGAAAAAATTGTGACTGTGGTTGGTTTTTTCTAAGTTGTCTAGTGTTAAATGGGCTCGTATACACACTTAGCAATGGGCCCACAACGGGGCCTGG</canonical>
            <polymorphic>GAAAGACACGTTTTTTTCATATTTTTAGTACGAAAACGGCCGTGTCTTTTAGAAAGTGGCCAATAGCTGAAAAACAATAAATTTTCGAAAAATTCTGTGAATTCAAAGTTTTCTATCTACCGTGAAACCTGTATTAGAAGGACCCCTTTAATAGAAGGACCCCTCTAATGGAATGACCCCCAGTAAAGAAGGACCACCTTCACAATAGTCATGAAAGTAAAAAATTTCAGTACGTTTTCAATGAAAAATATTTCGGGAATTCTACAGTTTAATAGAAATCTGTTGAAGAACTACTTTTCCGCTCAAAAACTTGATTAATTTTGGTGAAACTGACAGATTTTCATGACTTTTGAAAATTCTAATTGAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGGGCCGGCCCTTCTAATACAGGTTTTACGGTATGTCTATTTTACACCCTAAAAATTCTCAAAGCGATCGGAAGCTTCCCAGCTGAGCATCAGACTTCTAARAATGCCAAAAATCAACTGCAAAATTAGTTTTTCTATATATCTTATTGAACGGTACTGTAAGTATGGGAAATTCTGAAAATGTGCTTCAGACCTGTCGCCCCAATTTTTTCAAAATTCCAATTTTCTATTCCCAATCCCTTGTAGCACTTGACCCGTTTTCCCTATGCATTTCATGACATTCTCAAAAAACTACACTGCTTACTTTCCACTTTCACTAGTTACTTTTTCCTTCAAAAACGCCTGAATAGCCGAAAAAGTGGTAACTACGAATATTTAATGATGATGATCTAATGGATTCCCGTTACGGTGTTTTAATTGCCACCACTAGATAATTACCCCCCAATGATTATGTAAGTGAAGCAACGGAGAAAGCTGTTTTTAATGACCACGGCTTTTAGCGTTAGCTGAAAAAATTGTGACTGTGGTTGGTTTTTTCTAAGTTGTCTAGTGTTAAATGGGCTCGTATACACACTTAGCAATGGGCCCACAACGGGGCCTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>481 440 36 28 15</canonical_bands>
                <polymorphic_bands>481 455 36 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTCACAATAGTCATGAAAGTAA</pcr_primer_p1>
		<pcr_primer_p2>ACATTTTCAGAATTTCCCATACT</pcr_primer_p2>
		<pcr_amplicon_size>386</pcr_amplicon_size>
		<canonical_amplicon>CCTTCACAATAGTCATGAAAGTAAAAAATTTCAGTACGTTTTCAATGAAAAATATTTCGGGAATTCTACAGTTTAATAGAAATCTGTTGAAGAACTACTTTTCCGCTCAAAAACTTGATTAATTTTGGTGAAACTGACAGATTTTCATGACTTTTGAAAATTCTAATTGAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGGGCCGGCCCTTCTAATACAGGTTTTACGGTATGTCTATTTTACACCCTAAAAATTCTCAAAGCGATCGGAAGCTTCCCAGCTGAGCATCAGACTTCTAAGAATGCCAAAAATCAACTGCAAAATTAGTTTTTCTATATATCTTATTGAACGGTACTGTAAGTATGGGAAATTCTGAAAATGT</canonical_amplicon>
		<polymorphic_amplicon>CCTTCACAATAGTCATGAAAGTAAAAAATTTCAGTACGTTTTCAATGAAAAATATTTCGGGAATTCTACAGTTTAATAGAAATCTGTTGAAGAACTACTTTTCCGCTCAAAAACTTGATTAATTTTGGTGAAACTGACAGATTTTCATGACTTTTGAAAATTCTAATTGAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGGGCCGGCCCTTCTAATACAGGTTTTACGGTATGTCTATTTTACACCCTAAAAATTCTCAAAGCGATCGGAAGCTTCCCAGCTGAGCATCAGACTTCTAARAATGCCAAAAATCAACTGCAAAATTAGTTTTTCTATATATCTTATTGAACGGTACTGTAAGTATGGGAAATTCTGAAAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28914</snp_id>
        <super_contig>c004100149.Contig3</super_contig>
        <contig_pos>16571</contig_pos>
        <strand></strand>
        <context>TTTTCAAAAT[T/C]CCAATTTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGAAATTCTGAAAATGTGCTTCAGACCTGTCGCCCCAATTTTTTCAAAAT</left_flank>
        <right_flank>CCAATTTTCTATTCCCAATCCCTTGTAGCACTTGACCCGTTTTCCCTATG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTACCGTGAAACCTGTATTAGAAGGACCCCTTTAATAGAAGGACCCCTCTAATGGAATGACCCCCAGTAAAGAAGGACCACCTTCACAATAGTCATGAAAGTAAAAAATTTCAGTACGTTTTCAATGAAAAATATTTCGGGAATTCTACAGTTTAATAGAAATCTGTTGAAGAACTACTTTTCCGCTCAAAAACTTGATTAATTTTGGTGAAACTGACAGATTTTCATGACTTTTGAAAATTCTAATTGAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGGGCCGGCCCTTCTAATACAGGTTTTACGGTATGTCTATTTTACACCCTAAAAATTCTCAAAGCGATCGGAAGCTTCCCAGCTGAGCATCAGACTTCTAAGAATGCCAAAAATCAACTGCAAAATTAGTTTTTCTATATATCTTATTGAACGGTACTGTAAGTATGGGAAATTCTGAAAATGTGCTTCAGACCTGTCGCCCCAATTTTTTCAAAATTCCAATTTTCTATTCCCAATCCCTTGTAGCACTTGACCCGTTTTCCCTATGCATTTCATGACATTCTCAAAAAACTACACTGCTTACTTTCCACTTTCACTAGTTACTTTTTCCTTCAAAAACGCCTGAATAGCCGAAAAAGTGGTAACTACGAATATTTAATGATGATGATCTAATGGATTCCCGTTACGGTGTTTTAATTGCCACCACTAGATAATTACCCCCCAATGATTATGTAAGTGAAGCAACGGAGAAAGCTGTTTTTAATGACCACGGCTTTTAGCGTTAGCTGAAAAAATTGTGACTGTGGTTGGTTTTTTCTAAGTTGTCTAGTGTTAAATGGGCTCGTATACACACTTAGCAATGGGCCCACAACGGGGCCTGGCGGGTCCTGTCCTAGTTTCTTTCAGGTTCAAAATTTTTTGGTCAGCTAAATTAGATATGACAGAACTCGACAACTACTATAAAATAATGCTATTCGAAAAACTGTATTTTGTTTAT</canonical>
            <polymorphic>CTACCGTGAAACCTGTATTAGAAGGACCCCTTTAATAGAAGGACCCCTCTAATGGAATGACCCCCAGTAAAGAAGGACCACCTTCACAATAGTCATGAAAGTAAAAAATTTCAGTACGTTTTCAATGAAAAATATTTCGGGAATTCTACAGTTTAATAGAAATCTGTTGAAGAACTACTTTTCCGCTCAAAAACTTGATTAATTTTGGTGAAACTGACAGATTTTCATGACTTTTGAAAATTCTAATTGAAGGGCCCTCCGGAGGTACCTTGGAACAATAGAAGGGCCGGCCCTTCTAATACAGGTTTTACGGTATGTCTATTTTACACCCTAAAAATTCTCAAAGCGATCGGAAGCTTCCCAGCTGAGCATCAGACTTCTAAGAATGCCAAAAATCAACTGCAAAATTAGTTTTTCTATATATCTTATTGAACGGTACTGTAAGTATGGGAAATTCTGAAAATGTGCTTCAGACCTGTCGCCCCAATTTTTTCAAAATYCCAATTTTCTATTCCCAATCCCTTGTAGCACTTGACCCGTTTTCCCTATGCATTTCATGACATTCTCAAAAAACTACACTGCTTACTTTCCACTTTCACTAGTTACTTTTTCCTTCAAAAACGCCTGAATAGCCGAAAAAGTGGTAACTACGAATATTTAATGATGATGATCTAATGGATTCCCGTTACGGTGTTTTAATTGCCACCACTAGATAATTACCCCCCAATGATTATGTAAGTGAAGCAACGGAGAAAGCTGTTTTTAATGACCACGGCTTTTAGCGTTAGCTGAAAAAATTGTGACTGTGGTTGGTTTTTTCTAAGTTGTCTAGTGTTAAATGGGCTCGTATACACACTTAGCAATGGGCCCACAACGGGGCCTGGCGGGTCCTGTCCTAGTTTCTTTCAGGTTCAAAATTTTTTGGTCAGCTAAATTAGATATGACAGAACTCGACAACTACTATAAAATAATGCTATTCGAAAAACTGTATTTTGTTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>419 117 106 97 97 85 44 35</canonical_bands>
                <polymorphic_bands>463 117 106 97 97 85 35</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>195 120 106 91 81 70 68 59 47 38 35 33 17 17 11 6 6</canonical_bands>
                <polymorphic_bands>195 120 106 91 81 70 68 59 47 38 35 33 17 17 17 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTATGGGAAATTCTGAAAATG</pcr_primer_p1>
		<pcr_primer_p2>ACGGGAATCCATTAGATCAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AGTATGGGAAATTCTGAAAATGTGCTTCAGACCTGTCGCCCCAATTTTTTCAAAATTCCAATTTTCTATTCCCAATCCCTTGTAGCACTTGACCCGTTTTCCCTATGCATTTCATGACATTCTCAAAAAACTACACTGCTTACTTTCCACTTTCACTAGTTACTTTTTCCTTCAAAAACGCCTGAATAGCCGAAAAAGTGGTAACTACGAATATTTAATGATGATGATCTAATGGATTCCCGT</canonical_amplicon>
		<polymorphic_amplicon>AGTATGGGAAATTCTGAAAATGTGCTTCAGACCTGTCGCCCCAATTTTTTCAAAATYCCAATTTTCTATTCCCAATCCCTTGTAGCACTTGACCCGTTTTCCCTATGCATTTCATGACATTCTCAAAAAACTACACTGCTTACTTTCCACTTTCACTAGTTACTTTTTCCTTCAAAAACGCCTGAATAGCCGAAAAAGTGGTAACTACGAATATTTAATGATGATGATCTAATGGATTCCCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28915</snp_id>
        <super_contig>c004100149.Contig3</super_contig>
        <contig_pos>16891</contig_pos>
        <strand></strand>
        <context>TTGGTTTTTT[C/T]WAAGTTGTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCACGGCTTTTAGCGTTAGCTGAAAAAATTGTGACTGTGGTTGGTTTTTT</left_flank>
        <right_flank>TAAGTTGTCTAGTGTTAAATGGGCTCGTATACACACTTAGCAATGGGCCC</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTACACCCTAAAAATTCTCAAAGCGATCGGAAGCTTCCCAGCTGAGCATCAGACTTCTAAGAATGCCAAAAATCAACTGCAAAATTAGTTTTTCTATATATCTTATTGAACGGTACTGTAAGTATGGGAAATTCTGAAAATGTGCTTCAGACCTGTCGCCCCAATTTTTTCAAAATTCCAATTTTCTATTCCCAATCCCTTGTAGCACTTGACCCGTTTTCCCTATGCATTTCATGACATTCTCAAAAAACTACACTGCTTACTTTCCACTTTCACTAGTTACTTTTTCCTTCAAAAACGCCTGAATAGCCGAAAAAGTGGTAACTACGAATATTTAATGATGATGATCTAATGGATTCCCGTTACGGTGTTTTAATTGCCACCACTAGATAATTACCCCCCAATGATTATGTAAGTGAAGCAACGGAGAAAGCTGTTTTTAATGACCACGGCTTTTAGCGTTAGCTGAAAAAATTGTGACTGTGGTTGGTTTTTTCTAAGTTGTCTAGTGTTAAATGGGCTCGTATACACACTTAGCAATGGGCCCACAACGGGGCCTGGCGGGTCCTGTCCTAGTTTCTTTCAGGTTCAAAATTTTTTGGTCAGCTAAATTAGATATGACAGAACTCGACAACTACTATAAAATAATGCTATTCGAAAAACTGTATTTTGTTTATGAACAAAGTTACAAGGCATCAAGCTGGCTCAAATGATGTTTGGCTGGTAACAGGGTTCATAGACAAGACACAGTGATCCGCATGGTATCATATTGTAATACTCGTCAAGTTCTATCATATCTGATTTTGTTGGTAAAAATATGGATCCCAAAGGAACTAGGGCTCGTATTGCATTCATGCTTCAATCTTTGATCATCCTTTCCTCCAAAACTACAGTAGTTCATTTTTTTTGGCTAACTAAGGTGGATATGATAGAAGAACTCAAGGACTAAAAAATGATACAAAATGATACTAAAACTGTACCTCGTCTATGAACAAAG</canonical>
            <polymorphic>ATTTTACACCCTAAAAATTCTCAAAGCGATCGGAAGCTTCCCAGCTGAGCATCAGACTTCTAAGAATGCCAAAAATCAACTGCAAAATTAGTTTTTCTATATATCTTATTGAACGGTACTGTAAGTATGGGAAATTCTGAAAATGTGCTTCAGACCTGTCGCCCCAATTTTTTCAAAATTCCAATTTTCTATTCCCAATCCCTTGTAGCACTTGACCCGTTTTCCCTATGCATTTCATGACATTCTCAAAAAACTACACTGCTTACTTTCCACTTTCACTAGTTACTTTTTCCTTCAAAAACGCCTGAATAGCCGAAAAAGTGGTAACTACGAATATTTAATGATGATGATCTAATGGATTCCCGTTACGGTGTTTTAATTGCCACCACTAGATAATTACCCCCCAATGATTATGTAAGTGAAGCAACGGAGAAAGCTGTTTTTAATGACCACGGCTTTTAGCGTTAGCTGAAAAAATTGTGACTGTGGTTGGTTTTTTYTAAGTTGTCTAGTGTTAAATGGGCTCGTATACACACTTAGCAATGGGCCCACAACGGGGCCTGGCGGGTCCTGTCCTAGTTTCTTTCAGGTTCAAAATTTTTTGGTCAGCTAAATTAGATATGACAGAACTCGACAACTACTATAAAATAATGCTATTCGAAAAACTGTATTTTGTTTATGAACAAAGTTACAAGGCATCAAGCTGGCTCAAATGATGTTTGGCTGGTAACAGGGTTCATAGACAAGACACAGTGATCCGCATGGTATCATATTGTAATACTCGTCAAGTTCTATCATATCTGATTTTGTTGGTAAAAATATGGATCCCAAAGGAACTAGGGCTCGTATTGCATTCATGCTTCAATCTTTGATCATCCTTTCCTCCAAAACTACAGTAGTTCATTTTTTTTGGCTAACTAAGGTGGATATGATAGAAGAACTCAAGGACTAAAAAATGATACAAAATGATACTAAAACTGTACCTCGTCTATGAACAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>440 382 82 45 36 15</canonical_bands>
                <polymorphic_bands>476 382 82 45 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAATGACCACGGCTTTTAG</pcr_primer_p1>
		<pcr_primer_p2>ATTGAAGCATGAATGCAATAC</pcr_primer_p2>
		<pcr_amplicon_size>424</pcr_amplicon_size>
		<canonical_amplicon>TTAATGACCACGGCTTTTAGCGTTAGCTGAAAAAATTGTGACTGTGGTTGGTTTTTTCTAAGTTGTCTAGTGTTAAATGGGCTCGTATACACACTTAGCAATGGGCCCACAACGGGGCCTGGCGGGTCCTGTCCTAGTTTCTTTCAGGTTCAAAATTTTTTGGTCAGCTAAATTAGATATGACAGAACTCGACAACTACTATAAAATAATGCTATTCGAAAAACTGTATTTTGTTTATGAACAAAGTTACAAGGCATCAAGCTGGCTCAAATGATGTTTGGCTGGTAACAGGGTTCATAGACAAGACACAGTGATCCGCATGGTATCATATTGTAATACTCGTCAAGTTCTATCATATCTGATTTTGTTGGTAAAAATATGGATCCCAAAGGAACTAGGGCTCGTATTGCATTCATGCTTCAAT</canonical_amplicon>
		<polymorphic_amplicon>TTAATGACCACGGCTTTTAGCGTTAGCTGAAAAAATTGTGACTGTGGTTGGTTTTTTYTAAGTTGTCTAGTGTTAAATGGGCTCGTATACACACTTAGCAATGGGCCCACAACGGGGCCTGGCGGGTCCTGTCCTAGTTTCTTTCAGGTTCAAAATTTTTTGGTCAGCTAAATTAGATATGACAGAACTCGACAACTACTATAAAATAATGCTATTCGAAAAACTGTATTTTGTTTATGAACAAAGTTACAAGGCATCAAGCTGGCTCAAATGATGTTTGGCTGGTAACAGGGTTCATAGACAAGACACAGTGATCCGCATGGTATCATATTGTAATACTCGTCAAGTTCTATCATATCTGATTTTGTTGGTAAAAATATGGATCCCAAAGGAACTAGGGCTCGTATTGCATTCATGCTTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28916</snp_id>
        <super_contig>c004100149.Contig3</super_contig>
        <contig_pos>16892</contig_pos>
        <strand></strand>
        <context>TGGTTTTTTY[T/A]AAGTTGTCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CACGGCTTTTAGCGTTAGCTGAAAAAATTGTGACTGTGGTTGGTTTTTTC</left_flank>
        <right_flank>AAGTTGTCTAGTGTTAAATGGGCTCGTATACACACTTAGCAATGGGCCCA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTACACCCTAAAAATTCTCAAAGCGATCGGAAGCTTCCCAGCTGAGCATCAGACTTCTAAGAATGCCAAAAATCAACTGCAAAATTAGTTTTTCTATATATCTTATTGAACGGTACTGTAAGTATGGGAAATTCTGAAAATGTGCTTCAGACCTGTCGCCCCAATTTTTTCAAAATTCCAATTTTCTATTCCCAATCCCTTGTAGCACTTGACCCGTTTTCCCTATGCATTTCATGACATTCTCAAAAAACTACACTGCTTACTTTCCACTTTCACTAGTTACTTTTTCCTTCAAAAACGCCTGAATAGCCGAAAAAGTGGTAACTACGAATATTTAATGATGATGATCTAATGGATTCCCGTTACGGTGTTTTAATTGCCACCACTAGATAATTACCCCCCAATGATTATGTAAGTGAAGCAACGGAGAAAGCTGTTTTTAATGACCACGGCTTTTAGCGTTAGCTGAAAAAATTGTGACTGTGGTTGGTTTTTTCTAAGTTGTCTAGTGTTAAATGGGCTCGTATACACACTTAGCAATGGGCCCACAACGGGGCCTGGCGGGTCCTGTCCTAGTTTCTTTCAGGTTCAAAATTTTTTGGTCAGCTAAATTAGATATGACAGAACTCGACAACTACTATAAAATAATGCTATTCGAAAAACTGTATTTTGTTTATGAACAAAGTTACAAGGCATCAAGCTGGCTCAAATGATGTTTGGCTGGTAACAGGGTTCATAGACAAGACACAGTGATCCGCATGGTATCATATTGTAATACTCGTCAAGTTCTATCATATCTGATTTTGTTGGTAAAAATATGGATCCCAAAGGAACTAGGGCTCGTATTGCATTCATGCTTCAATCTTTGATCATCCTTTCCTCCAAAACTACAGTAGTTCATTTTTTTTGGCTAACTAAGGTGGATATGATAGAAGAACTCAAGGACTAAAAAATGATACAAAATGATACTAAAACTGTACCTCGTCTATGAACAAAGT</canonical>
            <polymorphic>TTTTACACCCTAAAAATTCTCAAAGCGATCGGAAGCTTCCCAGCTGAGCATCAGACTTCTAAGAATGCCAAAAATCAACTGCAAAATTAGTTTTTCTATATATCTTATTGAACGGTACTGTAAGTATGGGAAATTCTGAAAATGTGCTTCAGACCTGTCGCCCCAATTTTTTCAAAATTCCAATTTTCTATTCCCAATCCCTTGTAGCACTTGACCCGTTTTCCCTATGCATTTCATGACATTCTCAAAAAACTACACTGCTTACTTTCCACTTTCACTAGTTACTTTTTCCTTCAAAAACGCCTGAATAGCCGAAAAAGTGGTAACTACGAATATTTAATGATGATGATCTAATGGATTCCCGTTACGGTGTTTTAATTGCCACCACTAGATAATTACCCCCCAATGATTATGTAAGTGAAGCAACGGAGAAAGCTGTTTTTAATGACCACGGCTTTTAGCGTTAGCTGAAAAAATTGTGACTGTGGTTGGTTTTTTCWAAGTTGTCTAGTGTTAAATGGGCTCGTATACACACTTAGCAATGGGCCCACAACGGGGCCTGGCGGGTCCTGTCCTAGTTTCTTTCAGGTTCAAAATTTTTTGGTCAGCTAAATTAGATATGACAGAACTCGACAACTACTATAAAATAATGCTATTCGAAAAACTGTATTTTGTTTATGAACAAAGTTACAAGGCATCAAGCTGGCTCAAATGATGTTTGGCTGGTAACAGGGTTCATAGACAAGACACAGTGATCCGCATGGTATCATATTGTAATACTCGTCAAGTTCTATCATATCTGATTTTGTTGGTAAAAATATGGATCCCAAAGGAACTAGGGCTCGTATTGCATTCATGCTTCAATCTTTGATCATCCTTTCCTCCAAAACTACAGTAGTTCATTTTTTTTGGCTAACTAAGGTGGATATGATAGAAGAACTCAAGGACTAAAAAATGATACAAAATGATACTAAAACTGTACCTCGTCTATGAACAAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>440 382 83 44 36 15</canonical_bands>
                <polymorphic_bands>476 382 83 44 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAATGACCACGGCTTTTAG</pcr_primer_p1>
		<pcr_primer_p2>ATTGAAGCATGAATGCAATAC</pcr_primer_p2>
		<pcr_amplicon_size>424</pcr_amplicon_size>
		<canonical_amplicon>TTAATGACCACGGCTTTTAGCGTTAGCTGAAAAAATTGTGACTGTGGTTGGTTTTTTCTAAGTTGTCTAGTGTTAAATGGGCTCGTATACACACTTAGCAATGGGCCCACAACGGGGCCTGGCGGGTCCTGTCCTAGTTTCTTTCAGGTTCAAAATTTTTTGGTCAGCTAAATTAGATATGACAGAACTCGACAACTACTATAAAATAATGCTATTCGAAAAACTGTATTTTGTTTATGAACAAAGTTACAAGGCATCAAGCTGGCTCAAATGATGTTTGGCTGGTAACAGGGTTCATAGACAAGACACAGTGATCCGCATGGTATCATATTGTAATACTCGTCAAGTTCTATCATATCTGATTTTGTTGGTAAAAATATGGATCCCAAAGGAACTAGGGCTCGTATTGCATTCATGCTTCAAT</canonical_amplicon>
		<polymorphic_amplicon>TTAATGACCACGGCTTTTAGCGTTAGCTGAAAAAATTGTGACTGTGGTTGGTTTTTTCWAAGTTGTCTAGTGTTAAATGGGCTCGTATACACACTTAGCAATGGGCCCACAACGGGGCCTGGCGGGTCCTGTCCTAGTTTCTTTCAGGTTCAAAATTTTTTGGTCAGCTAAATTAGATATGACAGAACTCGACAACTACTATAAAATAATGCTATTCGAAAAACTGTATTTTGTTTATGAACAAAGTTACAAGGCATCAAGCTGGCTCAAATGATGTTTGGCTGGTAACAGGGTTCATAGACAAGACACAGTGATCCGCATGGTATCATATTGTAATACTCGTCAAGTTCTATCATATCTGATTTTGTTGGTAAAAATATGGATCCCAAAGGAACTAGGGCTCGTATTGCATTCATGCTTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28917</snp_id>
        <super_contig>c004100149.Contig3</super_contig>
        <contig_pos>40332</contig_pos>
        <strand>+</strand>
        <context>GAACTTTATT[A/T]TAAAAAAACC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTTTTACGAGAAAGTGACATAAAATGTATTTTTCACAAAGAACTTTATT</left_flank>
        <right_flank>TAAAAAAACCAAAAAAAAAAGCTCACACAGTCAACCAATCTTTAGTCTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAAGAAACTATGGCAGGACCCGGTTTACAAATAGGGTGATGCCTCTTCTGTCCATTTTTCATGAAAACAGGATACTGGATTTTCTTTAATTTTCATGAAATTTTCAGAATACTAAACAAAATCTTTGACTTTACTGGAAAAAAGTTCGCGACTAATCCGAAAAAATGATCATTTTGAAAAATACCGAAAAACCTGTAATAGAAGGACCCGCAACTGTTATCTTTGAGTCAATGTATCTCGGTTTCTGTCAAAGATAAAAAGATGTCAACTGAAAAAATGTTTATCATAATATCATAAATATTTTATCAGTTGACATAGTTTTGATAACTTGCACGGGAATTGAGATATTGGAACTCAAAGTGCATGTCGAAGCCGGCTGCCGGGTTTTGGTGTCCTACCTCCTTCAAATTGAGAAACATCCATTTCTTCCAGATACCGTACTACTTCAGTTTTACGAGAAAGTGACATAAAATGTATTTTTCACAAAGAACTTTATTTTAAAAAAACCAAAAAAAAAAGCTCACACAGTCAACCAATCTTTAGTCTCCTCTAGCTCCGACACATCTGTCACACTGTTGTATCCCCTCTTCCAGAACAATCTGAAAATTCCAACAAAATTTTTTTCTAGACCCTTCTAAAAATCAACCTCATCAAAACCAAAAAAGCTGTTAACAGTGCTGAGTAGCCGAAAATGATGGGCATCGCGTAGGTGTGAAGTGCCAAGCTACTTTTCATCTTCTCATTTGCCACGTGGCTCTTCGAAAGGTGATCTGACAGCTCTCGGCAGGTGGTGAAGACGAGTGTGAGCAGGAGCCAGGATGTCTGAAAATCTAGTTTTAAACTTGAAGAAAAATAATTTTATCGACATTCATAAAGGCGCAAACTCCATAGACCCGGATTGGAAGGAATACGAGTAGCAATAAGAATGAGCAATATGAAGACAAAAGGATGGCCAGGTGGATGAGATAGGAGGTCACAAATTGGTCATGGTAGTTTTT</canonical>
            <polymorphic>TGAAAGAAACTATGGCAGGACCCGGTTTACAAATAGGGTGATGCCTCTTCTGTCCATTTTTCATGAAAACAGGATACTGGATTTTCTTTAATTTTCATGAAATTTTCAGAATACTAAACAAAATCTTTGACTTTACTGGAAAAAAGTTCGCGACTAATCCGAAAAAATGATCATTTTGAAAAATACCGAAAAACCTGTAATAGAAGGACCCGCAACTGTTATCTTTGAGTCAATGTATCTCGGTTTCTGTCAAAGATAAAAAGATGTCAACTGAAAAAATGTTTATCATAATATCATAAATATTTTATCAGTTGACATAGTTTTGATAACTTGCACGGGAATTGAGATATTGGAACTCAAAGTGCATGTCGAAGCCGGCTGCCGGGTTTTGGTGTCCTACCTCCTTCAAATTGAGAAACATCCATTTCTTCCAGATACCGTACTACTTCAGTTTTACGAGAAAGTGACATAAAATGTATTTTTCACAAAGAACTTTATTWTAAAAAAACCAAAAAAAAAAGCTCACACAGTCAACCAATCTTTAGTCTCCTCTAGCTCCGACACATCTGTCACACTGTTGTATCCCCTCTTCCAGAACAATCTGAAAATTCCAACAAAATTTTTTTCTAGACCCTTCTAAAAATCAACCTCATCAAAACCAAAAAAGCTGTTAACAGTGCTGAGTAGCCGAAAATGATGGGCATCGCGTAGGTGTGAAGTGCCAAGCTACTTTTCATCTTCTCATTTGCCACGTGGCTCTTCGAAAGGTGATCTGACAGCTCTCGGCAGGTGGTGAAGACGAGTGTGAGCAGGAGCCAGGATGTCTGAAAATCTAGTTTTAAACTTGAAGAAAAATAATTTTATCGACATTCATAAAGGCGCAAACTCCATAGACCCGGATTGGAAGGAATACGAGTAGCAATAAGAATGAGCAATATGAAGACAAAAGGATGGCCAGGTGGATGAGATAGGAGGTCACAAATTGGTCATGGTAGTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 339 160</canonical_bands>
                <polymorphic_bands>840 160</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>412 171 168 161 88</canonical_bands>
                <polymorphic_bands>583 168 161 88</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTGAGAAACATCCATTTCTT</pcr_primer_p1>
		<pcr_primer_p2>TTGATGAGGTTGATTTTTAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATTGAGAAACATCCATTTCTTCCAGATACCGTACTACTTCAGTTTTACGAGAAAGTGACATAAAATGTATTTTTCACAAAGAACTTTATTTTAAAAAAACCAAAAAAAAAAGCTCACACAGTCAACCAATCTTTAGTCTCCTCTAGCTCCGACACATCTGTCACACTGTTGTATCCCCTCTTCCAGAACAATCTGAAAATTCCAACAAAATTTTTTTCTAGACCCTTCTAAAAATCAACCTCATCAA</canonical_amplicon>
		<polymorphic_amplicon>AAATTGAGAAACATCCATTTCTTCCAGATACCGTACTACTTCAGTTTTACGAGAAAGTGACATAAAATGTATTTTTCACAAAGAACTTTATTWTAAAAAAACCAAAAAAAAAAGCTCACACAGTCAACCAATCTTTAGTCTCCTCTAGCTCCGACACATCTGTCACACTGTTGTATCCCCTCTTCCAGAACAATCTGAAAATTCCAACAAAATTTTTTTCTAGACCCTTCTAAAAATCAACCTCATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28918</snp_id>
        <super_contig>c004100549.Contig2</super_contig>
        <contig_pos>8103</contig_pos>
        <strand>+</strand>
        <context>ACGTAATTTG[A/G]AGAAAAAGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATAATAAAAACAGGTGCAAAAATAGAAAAAAGGCAATTACGTAATTTG</left_flank>
        <right_flank>AGAAAAAGAGAAAAAAAAGGGAAAACTCGAGCAGATCAATTTTTGAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGGAATTCAGAAATTCAAAAATTCAGAGAAATTGAGAAATTCAGAAATTGAGAAATTGAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGTAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGAAATTCAGGAATTCAGAAATTCAAAAATTCAGAGAAATTGAGAAATTCAGAAATTGAGAAATTGAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAAAAATTCAGAAATTCGGAAATTCAGAAATTTCAAAAACTCAAAATTTTTTGTCTAAAAATTGATTTTTCAATATTTCAGTTCAACGGTTTCCGGAAAAAAACACACATCATTTTTTGGAATTTATGAAAAAAATTTCTGAATGTTTTCAGGTTTTTTAGGGGAAGGAAAAAGGATATTTATTGGTAAACATAATAAAAACAGGTGCAAAAATAGAAAAAAGGCAATTACGTAATTTGGAGAAAAAGAGAAAAAAAAGGGAAAACTCGAGCAGATCAATTTTTGAAAATTACATAAGGAATATTGAAATAGGTGGGAAATGAATTGTTTTTTTAATTACAGGGGGCCCTTCGATTACAGAGGGCACTTCTGTTTTTCCAAGTTCCTCTCGGAGGGCCCTTTTATTAGAGGGGCCCTTCTAATACAATTCTTACGGTATCACGAAAAAACTAATCTAGAAATCCTGGAATCTTTCAAAAATTCTTTCAAAACAAGGCGGAGCCTAATAGGCTCCGCCCATTTTTGATCACTTTTGCGTGATTCGAAAAATGGTCGAAAAGCTTGGTTTTCCGGTTCAAAGACCATTTTTTTCATGAATCTAGAAAAAAAAACAGATTAAATTTTCATGGGCATCATAAAAATGATATGAGGATTACTGTAGGTAATTGGATTAACAATTTTTTGGAATTTTTCGATTTTTTGGAAACTAGAAATTCCGAACAGAAAGAGCAAAGAAAAGA</canonical>
            <polymorphic>CAGGAATTCAGAAATTCAAAAATTCAGAGAAATTGAGAAATTCAGAAATTGAGAAATTGAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGTAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGAAATTCAGGAATTCAGAAATTCAAAAATTCAGAGAAATTGAGAAATTCAGAAATTGAGAAATTGAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAAAAATTCAGAAATTCGGAAATTCAGAAATTTCAAAAACTCAAAATTTTTTGTCTAAAAATTGATTTTTCAATATTTCAGTTCAACGGTTTCCGGAAAAAAACACACATCATTTTTTGGAATTTATGAAAAAAATTTCTGAATGTTTTCAGGTTTTTTAGGGGAAGGAAAAAGGATATTTATTGGTAAACATAATAAAAACAGGTGCAAAAATAGAAAAAAGGCAATTACGTAATTTGRAGAAAAAGAGAAAAAAAAGGGAAAACTCGAGCAGATCAATTTTTGAAAATTACATAAGGAATATTGAAATAGGTGGGAAATGAATTGTTTTTTTAATTACAGGGGGCCCTTCGATTACAGAGGGCACTTCTGTTTTTCCAAGTTCCTCTCGGAGGGCCCTTTTATTAGAGGGGCCCTTCTAATACAATTCTTACGGTATCACGAAAAAACTAATCTAGAAATCCTGGAATCTTTCAAAAATTCTTTCAAAACAAGGCGGAGCCTAATAGGCTCCGCCCATTTTTGATCACTTTTGCGTGATTCGAAAAATGGTCGAAAAGCTTGGTTTTCCGGTTCAAAGACCATTTTTTTCATGAATCTAGAAAAAAAAACAGATTAAATTTTCATGGGCATCATAAAAATGATATGAGGATTACTGTAGGTAATTGGATTAACAATTTTTTGGAATTTTTCGATTTTTTGGAAACTAGAAATTCCGAACAGAAAGAGCAAAGAAAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCTGAATGTTTTCAGGTTTT</pcr_primer_p1>
		<pcr_primer_p2>AACTTGGAAAAACAGAAGTGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTCTGAATGTTTTCAGGTTTTTTAGGGGAAGGAAAAAGGATATTTATTGGTAAACATAATAAAAACAGGTGCAAAAATAGAAAAAAGGCAATTACGTAATTTGGAGAAAAAGAGAAAAAAAAGGGAAAACTCGAGCAGATCAATTTTTGAAAATTACATAAGGAATATTGAAATAGGTGGGAAATGAATTGTTTTTTTAATTACAGGGGGCCCTTCGATTACAGAGGGCACTTCTGTTTTTCCAAGTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTCTGAATGTTTTCAGGTTTTTTAGGGGAAGGAAAAAGGATATTTATTGGTAAACATAATAAAAACAGGTGCAAAAATAGAAAAAAGGCAATTACGTAATTTGRAGAAAAAGAGAAAAAAAAGGGAAAACTCGAGCAGATCAATTTTTGAAAATTACATAAGGAATATTGAAATAGGTGGGAAATGAATTGTTTTTTTAATTACAGGGGGCCCTTCGATTACAGAGGGCACTTCTGTTTTTCCAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28919</snp_id>
        <super_contig>c004100549.Contig2</super_contig>
        <contig_pos>8128</contig_pos>
        <strand>+</strand>
        <context>AAAAGGGAAA[A/T]CTCGAGCAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAAAAAAGGCAATTACGTAATTTGGAGAAAAAGAGAAAAAAAAGGGAAA</left_flank>
        <right_flank>CTCGAGCAGATCAATTTTTGAAAATTACATAAGGAATATTGAAATAGGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGAAATTGAGAAATTCAGAAATTGAGAAATTGAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGTAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGAAATTCAGGAATTCAGAAATTCAAAAATTCAGAGAAATTGAGAAATTCAGAAATTGAGAAATTGAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAAAAATTCAGAAATTCGGAAATTCAGAAATTTCAAAAACTCAAAATTTTTTGTCTAAAAATTGATTTTTCAATATTTCAGTTCAACGGTTTCCGGAAAAAAACACACATCATTTTTTGGAATTTATGAAAAAAATTTCTGAATGTTTTCAGGTTTTTTAGGGGAAGGAAAAAGGATATTTATTGGTAAACATAATAAAAACAGGTGCAAAAATAGAAAAAAGGCAATTACGTAATTTGGAGAAAAAGAGAAAAAAAAGGGAAAACTCGAGCAGATCAATTTTTGAAAATTACATAAGGAATATTGAAATAGGTGGGAAATGAATTGTTTTTTTAATTACAGGGGGCCCTTCGATTACAGAGGGCACTTCTGTTTTTCCAAGTTCCTCTCGGAGGGCCCTTTTATTAGAGGGGCCCTTCTAATACAATTCTTACGGTATCACGAAAAAACTAATCTAGAAATCCTGGAATCTTTCAAAAATTCTTTCAAAACAAGGCGGAGCCTAATAGGCTCCGCCCATTTTTGATCACTTTTGCGTGATTCGAAAAATGGTCGAAAAGCTTGGTTTTCCGGTTCAAAGACCATTTTTTTCATGAATCTAGAAAAAAAAACAGATTAAATTTTCATGGGCATCATAAAAATGATATGAGGATTACTGTAGGTAATTGGATTAACAATTTTTTGGAATTTTTCGATTTTTTGGAAACTAGAAATTCCGAACAGAAAGAGCAAAGAAAAGAAGGGACAAAATGAAAAAAAAGAAGA</canonical>
            <polymorphic>AGAGAAATTGAGAAATTCAGAAATTGAGAAATTGAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGTAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGAAATTCAGGAATTCAGAAATTCAAAAATTCAGAGAAATTGAGAAATTCAGAAATTGAGAAATTGAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAAAAATTCAGAAATTCGGAAATTCAGAAATTTCAAAAACTCAAAATTTTTTGTCTAAAAATTGATTTTTCAATATTTCAGTTCAACGGTTTCCGGAAAAAAACACACATCATTTTTTGGAATTTATGAAAAAAATTTCTGAATGTTTTCAGGTTTTTTAGGGGAAGGAAAAAGGATATTTATTGGTAAACATAATAAAAACAGGTGCAAAAATAGAAAAAAGGCAATTACGTAATTTGGAGAAAAAGAGAAAAAAAAGGGAAAWCTCGAGCAGATCAATTTTTGAAAATTACATAAGGAATATTGAAATAGGTGGGAAATGAATTGTTTTTTTAATTACAGGGGGCCCTTCGATTACAGAGGGCACTTCTGTTTTTCCAAGTTCCTCTCGGAGGGCCCTTTTATTAGAGGGGCCCTTCTAATACAATTCTTACGGTATCACGAAAAAACTAATCTAGAAATCCTGGAATCTTTCAAAAATTCTTTCAAAACAAGGCGGAGCCTAATAGGCTCCGCCCATTTTTGATCACTTTTGCGTGATTCGAAAAATGGTCGAAAAGCTTGGTTTTCCGGTTCAAAGACCATTTTTTTCATGAATCTAGAAAAAAAAACAGATTAAATTTTCATGGGCATCATAAAAATGATATGAGGATTACTGTAGGTAATTGGATTAACAATTTTTTGGAATTTTTCGATTTTTTGGAAACTAGAAATTCCGAACAGAAAGAGCAAAGAAAAGAAGGGACAAAATGAAAAAAAAGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAAAACAGGTGCAAAAATAGA</pcr_primer_p1>
		<pcr_primer_p2>TCGTGATACCGTAAGAATTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAAAAACAGGTGCAAAAATAGAAAAAAGGCAATTACGTAATTTGGAGAAAAAGAGAAAAAAAAGGGAAAACTCGAGCAGATCAATTTTTGAAAATTACATAAGGAATATTGAAATAGGTGGGAAATGAATTGTTTTTTTAATTACAGGGGGCCCTTCGATTACAGAGGGCACTTCTGTTTTTCCAAGTTCCTCTCGGAGGGCCCTTTTATTAGAGGGGCCCTTCTAATACAATTCTTACGGTATCACGA</canonical_amplicon>
		<polymorphic_amplicon>ATAAAAACAGGTGCAAAAATAGAAAAAAGGCAATTACGTAATTTGGAGAAAAAGAGAAAAAAAAGGGAAAWCTCGAGCAGATCAATTTTTGAAAATTACATAAGGAATATTGAAATAGGTGGGAAATGAATTGTTTTTTTAATTACAGGGGGCCCTTCGATTACAGAGGGCACTTCTGTTTTTCCAAGTTCCTCTCGGAGGGCCCTTTTATTAGAGGGGCCCTTCTAATACAATTCTTACGGTATCACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28920</snp_id>
        <super_contig>c004100549.Contig2</super_contig>
        <contig_pos>8759</contig_pos>
        <strand>+</strand>
        <context>GAAAAGTAGA[A/G]AAAGAGCTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGGACCATAAAAATTTTATTTGAAAAAGAGAGAATTAGAGAAAAGTAGA</left_flank>
        <right_flank>AAAGAGCTAATTTTAGAATTTTGTTTTCAAAAAATGCGAAAACTTGGATT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCTTTTATTAGAGGGGCCCTTCTAATACAATTCTTACGGTATCACGAAAAAACTAATCTAGAAATCCTGGAATCTTTCAAAAATTCTTTCAAAACAAGGCGGAGCCTAATAGGCTCCGCCCATTTTTGATCACTTTTGCGTGATTCGAAAAATGGTCGAAAAGCTTGGTTTTCCGGTTCAAAGACCATTTTTTTCATGAATCTAGAAAAAAAAACAGATTAAATTTTCATGGGCATCATAAAAATGATATGAGGATTACTGTAGGTAATTGGATTAACAATTTTTTGGAATTTTTCGATTTTTTGGAAACTAGAAATTCCGAACAGAAAGAGCAAAGAAAAGAAGGGACAAAATGAAAAAAAAGAAGAAAAAGAGCCAGAATAAAAATTAATTGGTCATTTTAATTGGCCAATTAATTGTCTTCTAGAAATTTCCTTTTGAAGGGAATTGGGACCATAAAAATTTTATTTGAAAAAGAGAGAATTAGAGAAAAGTAGAGAAAGAGCTAATTTTAGAATTTTGTTTTCAAAAAATGCGAAAACTTGGATTCAGAAATTCAGAAATTCAGAAACTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGGAACTCTGAAATTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGGAACTCTGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCCGAAATCCAAAAATTCAGAAATCCAAAAATTCAGAAATCCAAAAATTCAAAAATTCGAAAATTGAAAACAGGAGCTCAAACGTAACAATAAGGAATCTAAAAATCTGAAGAAAATGATAAGAAGGAAAAAAAGAGAAAATCTGGAAGAAAAAAAAGTGCAGGTGCAAAGAATGATGACGGAGGTGTTGCCGGAGACCGGATGTCAAAGAGGGGGAGGAAAAAAAACTGAAATTAAAAAAATCTTTATTTCAAAAGTGTGCACTTTTAGAAGAACAAAAAAATTTGAAAAAAAATTTG</canonical>
            <polymorphic>CCCTTTTATTAGAGGGGCCCTTCTAATACAATTCTTACGGTATCACGAAAAAACTAATCTAGAAATCCTGGAATCTTTCAAAAATTCTTTCAAAACAAGGCGGAGCCTAATAGGCTCCGCCCATTTTTGATCACTTTTGCGTGATTCGAAAAATGGTCGAAAAGCTTGGTTTTCCGGTTCAAAGACCATTTTTTTCATGAATCTAGAAAAAAAAACAGATTAAATTTTCATGGGCATCATAAAAATGATATGAGGATTACTGTAGGTAATTGGATTAACAATTTTTTGGAATTTTTCGATTTTTTGGAAACTAGAAATTCCGAACAGAAAGAGCAAAGAAAAGAAGGGACAAAATGAAAAAAAAGAAGAAAAAGAGCCAGAATAAAAATTAATTGGTCATTTTAATTGGCCAATTAATTGTCTTCTAGAAATTTCCTTTTGAAGGGAATTGGGACCATAAAAATTTTATTTGAAAAAGAGAGAATTAGAGAAAAGTAGARAAAGAGCTAATTTTAGAATTTTGTTTTCAAAAAATGCGAAAACTTGGATTCAGAAATTCAGAAATTCAGAAACTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGGAACTCTGAAATTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGGAACTCTGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCCGAAATCCAAAAATTCAGAAATCCAAAAATTCAGAAATCCAAAAATTCAAAAATTCGAAAATTGAAAACAGGAGCTCAAACGTAACAATAAGGAATCTAAAAATCTGAAGAAAATGATAAGAAGGAAAAAAAGAGAAAATCTGGAAGAAAAAAAAGTGCAGGTGCAAAGAATGATGACGGAGGTGTTGCCGGAGACCGGATGTCAAAGAGGGGGAGGAAAAAAAACTGAAATTAAAAAAATCTTTATTTCAAAAGTGTGCACTTTTAGAAGAACAAAAAAATTTGAAAAAAAATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAATTGGGACCATAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTATTGTTACGTTTGAGCTCCT</pcr_primer_p2>
		<pcr_amplicon_size>350</pcr_amplicon_size>
		<canonical_amplicon>GGAATTGGGACCATAAAAATTTTATTTGAAAAAGAGAGAATTAGAGAAAAGTAGAGAAAGAGCTAATTTTAGAATTTTGTTTTCAAAAAATGCGAAAACTTGGATTCAGAAATTCAGAAATTCAGAAACTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGGAACTCTGAAATTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGGAACTCTGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCCGAAATCCAAAAATTCAGAAATCCAAAAATTCAGAAATCCAAAAATTCAAAAATTCGAAAATTGAAAACAGGAGCTCAAACGTAACAATAA</canonical_amplicon>
		<polymorphic_amplicon>GGAATTGGGACCATAAAAATTTTATTTGAAAAAGAGAGAATTAGAGAAAAGTAGARAAAGAGCTAATTTTAGAATTTTGTTTTCAAAAAATGCGAAAACTTGGATTCAGAAATTCAGAAATTCAGAAACTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGGAACTCTGAAATTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGGAACTCTGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCCGAAATCCAAAAATTCAGAAATCCAAAAATTCAGAAATCCAAAAATTCAAAAATTCGAAAATTGAAAACAGGAGCTCAAACGTAACAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28921</snp_id>
        <super_contig>c004100549.Contig2</super_contig>
        <contig_pos>8832</contig_pos>
        <strand></strand>
        <context>aattcagaaa[C/T]tcagaaattc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTTCAAAAAATGCGAAAACTTGGATTCAGAAATTCAGAAATTCAGAAA</left_flank>
        <right_flank>TCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGGAACTCTGAAATTC</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTTCAAAAATTCTTTCAAAACAAGGCGGAGCCTAATAGGCTCCGCCCATTTTTGATCACTTTTGCGTGATTCGAAAAATGGTCGAAAAGCTTGGTTTTCCGGTTCAAAGACCATTTTTTTCATGAATCTAGAAAAAAAAACAGATTAAATTTTCATGGGCATCATAAAAATGATATGAGGATTACTGTAGGTAATTGGATTAACAATTTTTTGGAATTTTTCGATTTTTTGGAAACTAGAAATTCCGAACAGAAAGAGCAAAGAAAAGAAGGGACAAAATGAAAAAAAAGAAGAAAAAGAGCCAGAATAAAAATTAATTGGTCATTTTAATTGGCCAATTAATTGTCTTCTAGAAATTTCCTTTTGAAGGGAATTGGGACCATAAAAATTTTATTTGAAAAAGAGAGAATTAGAGAAAAGTAGAGAAAGAGCTAATTTTAGAATTTTGTTTTCAAAAAATGCGAAAACTTGGATTCAGAAATTCAGAAATTCAGAAACTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGGAACTCTGAAATTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGGAACTCTGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCCGAAATCCAAAAATTCAGAAATCCAAAAATTCAGAAATCCAAAAATTCAAAAATTCGAAAATTGAAAACAGGAGCTCAAACGTAACAATAAGGAATCTAAAAATCTGAAGAAAATGATAAGAAGGAAAAAAAGAGAAAATCTGGAAGAAAAAAAAGTGCAGGTGCAAAGAATGATGACGGAGGTGTTGCCGGAGACCGGATGTCAAAGAGGGGGAGGAAAAAAAACTGAAATTAAAAAAATCTTTATTTCAAAAGTGTGCACTTTTAGAAGAACAAAAAAATTTGAAAAAAAATTTGAAAAAAAATTTTTTTTTTCGATTTTCTGAAATTTCGAAAAATCCGAATTTTCAATTTTTCTGATTTAAATAGG</canonical>
            <polymorphic>TCTTTCAAAAATTCTTTCAAAACAAGGCGGAGCCTAATAGGCTCCGCCCATTTTTGATCACTTTTGCGTGATTCGAAAAATGGTCGAAAAGCTTGGTTTTCCGGTTCAAAGACCATTTTTTTCATGAATCTAGAAAAAAAAACAGATTAAATTTTCATGGGCATCATAAAAATGATATGAGGATTACTGTAGGTAATTGGATTAACAATTTTTTGGAATTTTTCGATTTTTTGGAAACTAGAAATTCCGAACAGAAAGAGCAAAGAAAAGAAGGGACAAAATGAAAAAAAAGAAGAAAAAGAGCCAGAATAAAAATTAATTGGTCATTTTAATTGGCCAATTAATTGTCTTCTAGAAATTTCCTTTTGAAGGGAATTGGGACCATAAAAATTTTATTTGAAAAAGAGAGAATTAGAGAAAAGTAGAGAAAGAGCTAATTTTAGAATTTTGTTTTCAAAAAATGCGAAAACTTGGATTCAGAAATTCAGAAATTCAGAAAYTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGGAACTCTGAAATTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGGAACTCTGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCCGAAATCCAAAAATTCAGAAATCCAAAAATTCAGAAATCCAAAAATTCAAAAATTCGAAAATTGAAAACAGGAGCTCAAACGTAACAATAAGGAATCTAAAAATCTGAAGAAAATGATAAGAAGGAAAAAAAGAGAAAATCTGGAAGAAAAAAAAGTGCAGGTGCAAAGAATGATGACGGAGGTGTTGCCGGAGACCGGATGTCAAAGAGGGGGAGGAAAAAAAACTGAAATTAAAAAAATCTTTATTTCAAAAGTGTGCACTTTTAGAAGAACAAAAAAATTTGAAAAAAAATTTGAAAAAAAATTTTTTTTTTCGATTTTCTGAAATTTCGAAAAATCCGAATTTTCAATTTTTCTGATTTAAATAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAAAAGAGAGAATTAGAGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTATTGTTACGTTTGAGCTCCT</pcr_primer_p2>
		<pcr_amplicon_size>324</pcr_amplicon_size>
		<canonical_amplicon>TGAAAAAGAGAGAATTAGAGAAAAGTAGAGAAAGAGCTAATTTTAGAATTTTGTTTTCAAAAAATGCGAAAACTTGGATTCAGAAATTCAGAAATTCAGAAACTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGGAACTCTGAAATTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGGAACTCTGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCCGAAATCCAAAAATTCAGAAATCCAAAAATTCAGAAATCCAAAAATTCAAAAATTCGAAAATTGAAAACAGGAGCTCAAACGTAACAATAA</canonical_amplicon>
		<polymorphic_amplicon>TGAAAAAGAGAGAATTAGAGAAAAGTAGAGAAAGAGCTAATTTTAGAATTTTGTTTTCAAAAAATGCGAAAACTTGGATTCAGAAATTCAGAAATTCAGAAAYTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGGAACTCTGAAATTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGGAACTCTGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCCGAAATCCAAAAATTCAGAAATCCAAAAATTCAGAAATCCAAAAATTCAAAAATTCGAAAATTGAAAACAGGAGCTCAAACGTAACAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28922</snp_id>
        <super_contig>c004100701.Contig1</super_contig>
        <contig_pos>3971</contig_pos>
        <strand>-</strand>
        <context>ACAAGCCGGG[C/G]CGAGCCGTGC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCGCCCATTTAATAGAATTTAAACAAGCAAATGAGTTGCAACAAGCCGGG</left_flank>
        <right_flank>CGAGCCGTGCTGAGCCGTGAAGTAATTAAAAATCGAAAAGTCAAAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACCTAGTTATTATAAACGCATTTTAAATAATTCTAGGCTCAGCCACCCCATCAACCTGCGTTGACACCGTCAACCCGACCACCGGAAGATCGGAATGCGCTGCTAATTCGGGACTCTGCAACAATGTTGCCTTCAGAGATTGGATGAAGATCCAATGCCCAAGAACTTGTGGATACTGTAGATAATTTCGAGGACTAGTTGAATGTGTATTCTGTATATATGTCACTAAAATCAGCATTGTTTTTGTAAATAAACATTTAATCTGGCAATTTCTGTGTTAAATGTTAAAACGAATTATTCTATCAGAGAAGAAAAGAAAATGTTTATCATGGAAAACGAACAAAGATGAACTTTAACAAAACTGATCTAATGTAGGGATAAACATTTATGTCAAATCATCATGGAAATACCATGCACATACGAAATACCGTAAAAAATGTATTAGAATCGCCCATTTAATAGAATTTAAACAAGCAAATGAGTTGCAACAAGCCGGGGCGAGCCGTGCTGAGCCGTGAAGTAATTAAAAATCGAAAAGTCAAAAAAAATTTCTGTACACACATAGATCGGCCGAGCGGGCTAGACATCGGTCCGGATTGCTGAAAATTGGAGGAAATCTGGAAAACAACTCAAAAAAAAATATTTAAAAATGTAGACCAAAACAATCTCATTTTCATTCTCATTTTTGTCAGAAAAAATTCAATCAAAAAATTACAAATTTTGATTCACTTTTAGGCGATTATACGAAGTTTTATGTATATTTTCAATGCGAACTTAAAATCCTTTTATAAATTTTGTTTTTTTTTTCCCGCTCGAATCTTTTTTTTTTGGAGCTCATTTTCACATTTGATTCGGGTGCCAAAACCGGAAATGTATAACTAGGTCAACAATGACTTACAGAGTCTGCAAGTTTGTGGGCAGTTGCGGGCCATGAAGTCCTGTAGAAAACGTTGGTACAGTAGCTTCTCCATCCTGGACACTCGTTGATTCCATTGGTG</canonical>
            <polymorphic>TGACCTAGTTATTATAAACGCATTTTAAATAATTCTAGGCTCAGCCACCCCATCAACCTGCGTTGACACCGTCAACCCGACCACCGGAAGATCGGAATGCGCTGCTAATTCGGGACTCTGCAACAATGTTGCCTTCAGAGATTGGATGAAGATCCAATGCCCAAGAACTTGTGGATACTGTAGATAATTTCGAGGACTAGTTGAATGTGTATTCTGTATATATGTCACTAAAATCAGCATTGTTTTTGTAAATAAACATTTAATCTGGCAATTTCTGTGTTAAATGTTAAAACGAATTATTCTATCAGAGAAGAAAAGAAAATGTTTATCATGGAAAACGAACAAAGATGAACTTTAACAAAACTGATCTAATGTAGGGATAAACATTTATGTCAAATCATCATGGAAATACCATGCACATACGAAATACCGTAAAAAATGTATTAGAATCGCCCATTTAATAGAATTTAAACAAGCAAATGAGTTGCAACAAGCCGGGSCGAGCCGTGCTGAGCCGTGAAGTAATTAAAAATCGAAAAGTCAAAAAAAATTTCTGTACACACATAGATCGGCCGAGCGGGCTAGACATCGGTCCGGATTGCTGAAAATTGGAGGAAATCTGGAAAACAACTCAAAAAAAAATATTTAAAAATGTAGACCAAAACAATCTCATTTTCATTCTCATTTTTGTCAGAAAAAATTCAATCAAAAAATTACAAATTTTGATTCACTTTTAGGCGATTATACGAAGTTTTATGTATATTTTCAATGCGAACTTAAAATCCTTTTATAAATTTTGTTTTTTTTTTCCCGCTCGAATCTTTTTTTTTTGGAGCTCATTTTCACATTTGATTCGGGTGCCAAAACCGGAAATGTATAACTAGGTCAACAATGACTTACAGAGTCTGCAAGTTTGTGGGCAGTTGCGGGCCATGAAGTCCTGTAGAAAACGTTGGTACAGTAGCTTCTCCATCCTGGACACTCGTTGATTCCATTGGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 349 77 72</canonical_bands>
                <polymorphic_bands>579 349 72</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>506 422 72</canonical_bands>
                <polymorphic_bands>578 422</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGAATCGCCCATTTAATAGAA</pcr_primer_p1>
		<pcr_primer_p2>CTGACAAAAATGAGAATGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGAATCGCCCATTTAATAGAATTTAAACAAGCAAATGAGTTGCAACAAGCCGGGGCGAGCCGTGCTGAGCCGTGAAGTAATTAAAAATCGAAAAGTCAAAAAAAATTTCTGTACACACATAGATCGGCCGAGCGGGCTAGACATCGGTCCGGATTGCTGAAAATTGGAGGAAATCTGGAAAACAACTCAAAAAAAAATATTTAAAAATGTAGACCAAAACAATCTCATTTTCATTCTCATTTTTGTCAG</canonical_amplicon>
		<polymorphic_amplicon>TAGAATCGCCCATTTAATAGAATTTAAACAAGCAAATGAGTTGCAACAAGCCGGGSCGAGCCGTGCTGAGCCGTGAAGTAATTAAAAATCGAAAAGTCAAAAAAAATTTCTGTACACACATAGATCGGCCGAGCGGGCTAGACATCGGTCCGGATTGCTGAAAATTGGAGGAAATCTGGAAAACAACTCAAAAAAAAATATTTAAAAATGTAGACCAAAACAATCTCATTTTCATTCTCATTTTTGTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28923</snp_id>
        <super_contig>c004100701.Contig1</super_contig>
        <contig_pos>3982</contig_pos>
        <strand>-</strand>
        <context>CGAGCCGTGC[A/G]GAGCCGTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAGAATTTAAACAAGCAAATGAGTTGCAACAAGCCGGGGCGAGCCGTGC</left_flank>
        <right_flank>GAGCCGTGAAGTAATTAAAAATCGAAAAGTCAAAAAAAATTTCTGTACAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATAAACGCATTTTAAATAATTCTAGGCTCAGCCACCCCATCAACCTGCGTTGACACCGTCAACCCGACCACCGGAAGATCGGAATGCGCTGCTAATTCGGGACTCTGCAACAATGTTGCCTTCAGAGATTGGATGAAGATCCAATGCCCAAGAACTTGTGGATACTGTAGATAATTTCGAGGACTAGTTGAATGTGTATTCTGTATATATGTCACTAAAATCAGCATTGTTTTTGTAAATAAACATTTAATCTGGCAATTTCTGTGTTAAATGTTAAAACGAATTATTCTATCAGAGAAGAAAAGAAAATGTTTATCATGGAAAACGAACAAAGATGAACTTTAACAAAACTGATCTAATGTAGGGATAAACATTTATGTCAAATCATCATGGAAATACCATGCACATACGAAATACCGTAAAAAATGTATTAGAATCGCCCATTTAATAGAATTTAAACAAGCAAATGAGTTGCAACAAGCCGGGGCGAGCCGTGCTGAGCCGTGAAGTAATTAAAAATCGAAAAGTCAAAAAAAATTTCTGTACACACATAGATCGGCCGAGCGGGCTAGACATCGGTCCGGATTGCTGAAAATTGGAGGAAATCTGGAAAACAACTCAAAAAAAAATATTTAAAAATGTAGACCAAAACAATCTCATTTTCATTCTCATTTTTGTCAGAAAAAATTCAATCAAAAAATTACAAATTTTGATTCACTTTTAGGCGATTATACGAAGTTTTATGTATATTTTCAATGCGAACTTAAAATCCTTTTATAAATTTTGTTTTTTTTTTCCCGCTCGAATCTTTTTTTTTTGGAGCTCATTTTCACATTTGATTCGGGTGCCAAAACCGGAAATGTATAACTAGGTCAACAATGACTTACAGAGTCTGCAAGTTTGTGGGCAGTTGCGGGCCATGAAGTCCTGTAGAAAACGTTGGTACAGTAGCTTCTCCATCCTGGACACTCGTTGATTCCATTGGTGTTTGAACGATC</canonical>
            <polymorphic>TTATAAACGCATTTTAAATAATTCTAGGCTCAGCCACCCCATCAACCTGCGTTGACACCGTCAACCCGACCACCGGAAGATCGGAATGCGCTGCTAATTCGGGACTCTGCAACAATGTTGCCTTCAGAGATTGGATGAAGATCCAATGCCCAAGAACTTGTGGATACTGTAGATAATTTCGAGGACTAGTTGAATGTGTATTCTGTATATATGTCACTAAAATCAGCATTGTTTTTGTAAATAAACATTTAATCTGGCAATTTCTGTGTTAAATGTTAAAACGAATTATTCTATCAGAGAAGAAAAGAAAATGTTTATCATGGAAAACGAACAAAGATGAACTTTAACAAAACTGATCTAATGTAGGGATAAACATTTATGTCAAATCATCATGGAAATACCATGCACATACGAAATACCGTAAAAAATGTATTAGAATCGCCCATTTAATAGAATTTAAACAAGCAAATGAGTTGCAACAAGCCGGGGCGAGCCGTGCRGAGCCGTGAAGTAATTAAAAATCGAAAAGTCAAAAAAAATTTCTGTACACACATAGATCGGCCGAGCGGGCTAGACATCGGTCCGGATTGCTGAAAATTGGAGGAAATCTGGAAAACAACTCAAAAAAAAATATTTAAAAATGTAGACCAAAACAATCTCATTTTCATTCTCATTTTTGTCAGAAAAAATTCAATCAAAAAATTACAAATTTTGATTCACTTTTAGGCGATTATACGAAGTTTTATGTATATTTTCAATGCGAACTTAAAATCCTTTTATAAATTTTGTTTTTTTTTTCCCGCTCGAATCTTTTTTTTTTGGAGCTCATTTTCACATTTGATTCGGGTGCCAAAACCGGAAATGTATAACTAGGTCAACAATGACTTACAGAGTCTGCAAGTTTGTGGGCAGTTGCGGGCCATGAAGTCCTGTAGAAAACGTTGGTACAGTAGCTTCTCCATCCTGGACACTCGTTGATTCCATTGGTGTTTGAACGATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCTNAGC</site>
                <isoschizomers>
                    <enzyme>BlpI</enzyme>
                    <enzyme>Bpu1102I</enzyme>
                    <enzyme>Bsp1720I</enzyme>
                    <enzyme>CelII</enzyme>
                    <enzyme>EspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 470 29</canonical_bands>
                <polymorphic_bands>971 29</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 470 29</canonical_bands>
                <polymorphic_bands>971 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGAATCGCCCATTTAATAGAA</pcr_primer_p1>
		<pcr_primer_p2>CTGACAAAAATGAGAATGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGAATCGCCCATTTAATAGAATTTAAACAAGCAAATGAGTTGCAACAAGCCGGGGCGAGCCGTGCTGAGCCGTGAAGTAATTAAAAATCGAAAAGTCAAAAAAAATTTCTGTACACACATAGATCGGCCGAGCGGGCTAGACATCGGTCCGGATTGCTGAAAATTGGAGGAAATCTGGAAAACAACTCAAAAAAAAATATTTAAAAATGTAGACCAAAACAATCTCATTTTCATTCTCATTTTTGTCAG</canonical_amplicon>
		<polymorphic_amplicon>TAGAATCGCCCATTTAATAGAATTTAAACAAGCAAATGAGTTGCAACAAGCCGGGGCGAGCCGTGCRGAGCCGTGAAGTAATTAAAAATCGAAAAGTCAAAAAAAATTTCTGTACACACATAGATCGGCCGAGCGGGCTAGACATCGGTCCGGATTGCTGAAAATTGGAGGAAATCTGGAAAACAACTCAAAAAAAAATATTTAAAAATGTAGACCAAAACAATCTCATTTTCATTCTCATTTTTGTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28924</snp_id>
        <super_contig>c004100701.Contig1</super_contig>
        <contig_pos>6507</contig_pos>
        <strand>+</strand>
        <context>CGCTCGGCCG[A/G]TCTATGTGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTCCTCCAATTTTCAGCAATCCGGACCGATGTCTAGCCCGCTCGGCCG</left_flank>
        <right_flank>TCTATGTGTGTACAGAAATTTTTTTTGACTTTTCGATTTTTAATTACTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACCCAACCACCGGAAGATCGGAATGCTCTGCCAATTTGGGACTCTGCAACAATGTCGCCTTCAGAGATTGGATGAAGATCCAATGCCCAAGAACTTGTGGATACTGTAGATAAACTTACAAATGTGTTTTGTATATGTTTCTGTATAGTCAGATTTAATACTCTTTGTATAAATAAACCGTAATAGCCATGCATTTCCGGTTTTGGCACCCGAATCAAATGTGAAAATGAGCTCCAAAAAAAAAAGATTCGAGCGGGAAAAAAAAAACAAAATTTATAAAAGGATTTTAAGTTCGCATTGAAAATATACATAAAACTTCGTATAATCGCCTAAAAGTGAATCAAAATTTGTAATTTTTTGATTGAATTTTTTCTGACAAAAATGAGAATGAAAATGAGATTGTTTTGGTCTACATTTTTAAATATTTTTTTTTGAGTTGTTTTCCAGATTTCCTCCAATTTTCAGCAATCCGGACCGATGTCTAGCCCGCTCGGCCGATCTATGTGTGTACAGAAATTTTTTTTGACTTTTCGATTTTTAATTACTTCACGGCTCAGCACGGCTCGCCCCGGCTTGTTGCAACTCATTTGCTTGTTTAAATTCTATTAAATGGGCGATTCTAATACATTTTTCACGGTATTTCGTATGTGCATGGTATTTCCATGATGATTTGACATAAATGTTTATCCCGACATTAGATCAGTTTTGTTAAAGTTCATCTTTGTTCGTTTTCCATGATAAACATTTTCTTTTCTTCT</canonical>
            <polymorphic>CAACCCAACCACCGGAAGATCGGAATGCTCTGCCAATTTGGGACTCTGCAACAATGTCGCCTTCAGAGATTGGATGAAGATCCAATGCCCAAGAACTTGTGGATACTGTAGATAAACTTACAAATGTGTTTTGTATATGTTTCTGTATAGTCAGATTTAATACTCTTTGTATAAATAAACCGTAATAGCCATGCATTTCCGGTTTTGGCACCCGAATCAAATGTGAAAATGAGCTCCAAAAAAAAAAGATTCGAGCGGGAAAAAAAAAACAAAATTTATAAAAGGATTTTAAGTTCGCATTGAAAATATACATAAAACTTCGTATAATCGCCTAAAAGTGAATCAAAATTTGTAATTTTTTGATTGAATTTTTTCTGACAAAAATGAGAATGAAAATGAGATTGTTTTGGTCTACATTTTTAAATATTTTTTTTTGAGTTGTTTTCCAGATTTCCTCCAATTTTCAGCAATCCGGACCGATGTCTAGCCCGCTCGGCCGRTCTATGTGTGTACAGAAATTTTTTTTGACTTTTCGATTTTTAATTACTTCACGGCTCAGCACGGCTCGCCCCGGCTTGTTGCAACTCATTTGCTTGTTTAAATTCTATTAAATGGGCGATTCTAATACATTTTTCACGGTATTTCGTATGTGCATGGTATTTCCATGATGATTTGACATAAATGTTTATCCCGACATTAGATCAGTTTTGTTAAAGTTCATCTTTGTTCGTTTTCCATGATAAACATTTTCTTTTCTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>420 201 61 61 17</canonical_bands>
                <polymorphic_bands>621 61 61 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATGAGATTGTTTTGGTCTA</pcr_primer_p1>
		<pcr_primer_p2>ACCGTGAAAAATGTATTAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAAATGAGATTGTTTTGGTCTACATTTTTAAATATTTTTTTTTGAGTTGTTTTCCAGATTTCCTCCAATTTTCAGCAATCCGGACCGATGTCTAGCCCGCTCGGCCGATCTATGTGTGTACAGAAATTTTTTTTGACTTTTCGATTTTTAATTACTTCACGGCTCAGCACGGCTCGCCCCGGCTTGTTGCAACTCATTTGCTTGTTTAAATTCTATTAAATGGGCGATTCTAATACATTTTTCACGGT</canonical_amplicon>
		<polymorphic_amplicon>GAAAATGAGATTGTTTTGGTCTACATTTTTAAATATTTTTTTTTGAGTTGTTTTCCAGATTTCCTCCAATTTTCAGCAATCCGGACCGATGTCTAGCCCGCTCGGCCGRTCTATGTGTGTACAGAAATTTTTTTTGACTTTTCGATTTTTAATTACTTCACGGCTCAGCACGGCTCGCCCCGGCTTGTTGCAACTCATTTGCTTGTTTAAATTCTATTAAATGGGCGATTCTAATACATTTTTCACGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28925</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>16233</contig_pos>
        <strand></strand>
        <context>AACGAGCATC[G/T]TRAAAGATCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATCTTCGAACTTGATATTTTGGATGAATTAATACATAAAAACGAGCATC</left_flank>
        <right_flank>TAAAAGATCTTCAAACTGGCGTAAAAATCATAAATAATGCTCTAAAACGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTTTTGGATTTCTTGTACTTCTCTATTTATTTTTCTGAGATTCTGAGATTCTAGAAAAATCGTCTAGAAGATTCCTTCTTCTTGTTTTCTGTTTTTCCCCCCAAATTCAATTTCCCGCCGTTCCTTGGCCCCCTAAAGGGTGTCCCTGGACGCCTGCGTCCCTATTTTTCTGGACCATAAACCATTTGAGTCCTTCTGCCTCTAGTCACATTTCCCAAAAAAATCCCAAGAAATGTTCTTCCCAATAAAATTTTTCGCGCTTTTCTTGGTCGTTTTTGCCTTATGTGCCCATGGATTTGGCGTTATCCAGTCACCAATTAAAGCTTTTGAAATTGCCAAAAACCAACCCGATTGCCAGGAAAAACTGACCAATTATGCCATGTCAATGTGTGCTGGAGAGTGTAAGGAAGGTTTTGAAGGTGAGGGACGATCTTTAAAGCGCATAACTATCTTCGAACTTGATATTTTGGATGAATTAATACATAAAAACGAGCATCGTAAAAGATCTTCAAACTGGCGTAAAAATCATAAATAATGCTCTAAAACGAAAAAAGTTATGCGTTTTTAAACACGGCAAGGTGAAAAGGGCCATTCTTGCTTTAAAGGCGCATAACTTTTTATGTTTTTGAGATTTAGTTAAAATTTTTATATCATCTTCTTGCCCATTTAAAATGCTACATTTGCATTTATAATTCGTTTGAGAAATGTTAAATTTGAAGAAAGTTATGTGCCTTTAAACGGCAAGGTGAACAGAGCACCCCGACCATCTTGTTTTAAAGGCTCATAACTTTCTTTAAGATCAACGTTTTGAATCGATTGAAAAATCAAAATGTAGCATACTTGTAAACGGGCCGGGNCGGGNTTTTTNNGGAATTTCNGAGGCCCGGCCCGGNCCGGCCCGGCGGGACTGTTATTCCACAAGTTCTGAAAATTTCAAAAACACATAAGGGGGACCCTTATGTGATTTTTTTCGATAAAAAAATTTTTTTCGAGTTTTT</canonical>
            <polymorphic>AACTTTTGGATTTCTTGTACTTCTCTATTTATTTTTCTGAGATTCTGAGATTCTAGAAAAATCGTCTAGAAGATTCCTTCTTCTTGTTTTCTGTTTTTCCCCCCAAATTCAATTTCCCGCCGTTCCTTGGCCCCCTAAAGGGTGTCCCTGGACGCCTGCGTCCCTATTTTTCTGGACCATAAACCATTTGAGTCCTTCTGCCTCTAGTCACATTTCCCAAAAAAATCCCAAGAAATGTTCTTCCCAATAAAATTTTTCGCGCTTTTCTTGGTCGTTTTTGCCTTATGTGCCCATGGATTTGGCGTTATCCAGTCACCAATTAAAGCTTTTGAAATTGCCAAAAACCAACCCGATTGCCAGGAAAAACTGACCAATTATGCCATGTCAATGTGTGCTGGAGAGTGTAAGGAAGGTTTTGAAGGTGAGGGACGATCTTTAAAGCGCATAACTATCTTCGAACTTGATATTTTGGATGAATTAATACATAAAAACGAGCATCKTAAAAGATCTTCAAACTGGCGTAAAAATCATAAATAATGCTCTAAAACGAAAAAAGTTATGCGTTTTTAAACACGGCAAGGTGAAAAGGGCCATTCTTGCTTTAAAGGCGCATAACTTTTTATGTTTTTGAGATTTAGTTAAAATTTTTATATCATCTTCTTGCCCATTTAAAATGCTACATTTGCATTTATAATTCGTTTGAGAAATGTTAAATTTGAAGAAAGTTATGTGCCTTTAAACGGCAAGGTGAACAGAGCACCCCGACCATCTTGTTTTAAAGGCTCATAACTTTCTTTAAGATCAACGTTTTGAATCGATTGAAAAATCAAAATGTAGCATACTTGTAAACGGGCCGGGNCGGGNTTTTTNNGGAATTTCNGAGGCCCGGCCCGGNCCGGCCCGGCGGGACTGTTATTCCACAAGTTCTGAAAATTTCAAAAACACATAAGGGGGACCCTTATGTGATTTTTTTCGATAAAAAAATTTTTTTCGAGTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCATAACTATCTTCGAACTTGAT</pcr_primer_p1>
		<pcr_primer_p2>TGGATTGTTTGTCTGTTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>593</pcr_amplicon_size>
		<canonical_amplicon>GCATAACTATCTTCGAACTTGATATTTTGGATGAATTAATACATAAAAACGAGCATCGTAAAAGATCTTCAAACTGGC</canonical_amplicon>
		<polymorphic_amplicon>GCATAACTATCTTCGAACTTGATATTTTGGATGAATTAATACATAAAAACGAGCATCKTAAAAGATCTTCAAACTGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28926</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>16235</contig_pos>
        <strand></strand>
        <context>CGAGCATCKT[A/G]AAAGATCTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTCGAACTTGATATTTTGGATGAATTAATACATAAAAACGAGCATCGT</left_flank>
        <right_flank>AAAGATCTTCAAACTGGCGTAAAAATCATAAATAATGCTCTAAAACGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTGGATTTCTTGTACTTCTCTATTTATTTTTCTGAGATTCTGAGATTCTAGAAAAATCGTCTAGAAGATTCCTTCTTCTTGTTTTCTGTTTTTCCCCCCAAATTCAATTTCCCGCCGTTCCTTGGCCCCCTAAAGGGTGTCCCTGGACGCCTGCGTCCCTATTTTTCTGGACCATAAACCATTTGAGTCCTTCTGCCTCTAGTCACATTTCCCAAAAAAATCCCAAGAAATGTTCTTCCCAATAAAATTTTTCGCGCTTTTCTTGGTCGTTTTTGCCTTATGTGCCCATGGATTTGGCGTTATCCAGTCACCAATTAAAGCTTTTGAAATTGCCAAAAACCAACCCGATTGCCAGGAAAAACTGACCAATTATGCCATGTCAATGTGTGCTGGAGAGTGTAAGGAAGGTTTTGAAGGTGAGGGACGATCTTTAAAGCGCATAACTATCTTCGAACTTGATATTTTGGATGAATTAATACATAAAAACGAGCATCGTAAAAGATCTTCAAACTGGCGTAAAAATCATAAATAATGCTCTAAAACGAAAAAAGTTATGCGTTTTTAAACACGGCAAGGTGAAAAGGGCCATTCTTGCTTTAAAGGCGCATAACTTTTTATGTTTTTGAGATTTAGTTAAAATTTTTATATCATCTTCTTGCCCATTTAAAATGCTACATTTGCATTTATAATTCGTTTGAGAAATGTTAAATTTGAAGAAAGTTATGTGCCTTTAAACGGCAAGGTGAACAGAGCACCCCGACCATCTTGTTTTAAAGGCTCATAACTTTCTTTAAGATCAACGTTTTGAATCGATTGAAAAATCAAAATGTAGCATACTTGTAAACGGGCCGGGNCGGGNTTTTTNNGGAATTTCNGAGGCCCGGCCCGGNCCGGCCCGGCGGGACTGTTATTCCACAAGTTCTGAAAATTTCAAAAACACATAAGGGGGACCCTTATGTGATTTTTTTCGATAAAAAAATTTTTTTCGAGTTTTTTC</canonical>
            <polymorphic>CTTTTGGATTTCTTGTACTTCTCTATTTATTTTTCTGAGATTCTGAGATTCTAGAAAAATCGTCTAGAAGATTCCTTCTTCTTGTTTTCTGTTTTTCCCCCCAAATTCAATTTCCCGCCGTTCCTTGGCCCCCTAAAGGGTGTCCCTGGACGCCTGCGTCCCTATTTTTCTGGACCATAAACCATTTGAGTCCTTCTGCCTCTAGTCACATTTCCCAAAAAAATCCCAAGAAATGTTCTTCCCAATAAAATTTTTCGCGCTTTTCTTGGTCGTTTTTGCCTTATGTGCCCATGGATTTGGCGTTATCCAGTCACCAATTAAAGCTTTTGAAATTGCCAAAAACCAACCCGATTGCCAGGAAAAACTGACCAATTATGCCATGTCAATGTGTGCTGGAGAGTGTAAGGAAGGTTTTGAAGGTGAGGGACGATCTTTAAAGCGCATAACTATCTTCGAACTTGATATTTTGGATGAATTAATACATAAAAACGAGCATCGTRAAAGATCTTCAAACTGGCGTAAAAATCATAAATAATGCTCTAAAACGAAAAAAGTTATGCGTTTTTAAACACGGCAAGGTGAAAAGGGCCATTCTTGCTTTAAAGGCGCATAACTTTTTATGTTTTTGAGATTTAGTTAAAATTTTTATATCATCTTCTTGCCCATTTAAAATGCTACATTTGCATTTATAATTCGTTTGAGAAATGTTAAATTTGAAGAAAGTTATGTGCCTTTAAACGGCAAGGTGAACAGAGCACCCCGACCATCTTGTTTTAAAGGCTCATAACTTTCTTTAAGATCAACGTTTTGAATCGATTGAAAAATCAAAATGTAGCATACTTGTAAACGGGCCGGGNCGGGNTTTTTNNGGAATTTCNGAGGCCCGGCCCGGNCCGGCCCGGCGGGACTGTTATTCCACAAGTTCTGAAAATTTCAAAAACACATAAGGGGGACCCTTATGTGATTTTTTTCGATAAAAAAATTTTTTTCGAGTTTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTATCTTCGAACTTGATATTTTG</pcr_primer_p1>
		<pcr_primer_p2>TGGATTGTTTGTCTGTTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>589</pcr_amplicon_size>
		<canonical_amplicon>AACTATCTTCGAACTTGATATTTTGGATGAATTAATACATAAAAACGAGCATCGTAAAAGATCTTCAAACTGGCGT</canonical_amplicon>
		<polymorphic_amplicon>AACTATCTTCGAACTTGATATTTTGGATGAATTAATACATAAAAACGAGCATCGTRAAAGATCTTCAAACTGGCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28927</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>16297</contig_pos>
        <strand></strand>
        <context>aagttatgcg[T/C]ytttaaacac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AACTGGCGTAAAAATCATAAATAATGCTCTAAAACGAAAAAAGTTATGCG</left_flank>
        <right_flank>TTTTAAACACGGCAAGGTGAAAAGGGCCATTCTTGCTTTAAAGGCGCATA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAGAAGATTCCTTCTTCTTGTTTTCTGTTTTTCCCCCCAAATTCAATTTCCCGCCGTTCCTTGGCCCCCTAAAGGGTGTCCCTGGACGCCTGCGTCCCTATTTTTCTGGACCATAAACCATTTGAGTCCTTCTGCCTCTAGTCACATTTCCCAAAAAAATCCCAAGAAATGTTCTTCCCAATAAAATTTTTCGCGCTTTTCTTGGTCGTTTTTGCCTTATGTGCCCATGGATTTGGCGTTATCCAGTCACCAATTAAAGCTTTTGAAATTGCCAAAAACCAACCCGATTGCCAGGAAAAACTGACCAATTATGCCATGTCAATGTGTGCTGGAGAGTGTAAGGAAGGTTTTGAAGGTGAGGGACGATCTTTAAAGCGCATAACTATCTTCGAACTTGATATTTTGGATGAATTAATACATAAAAACGAGCATCGTAAAAGATCTTCAAACTGGCGTAAAAATCATAAATAATGCTCTAAAACGAAAAAAGTTATGCGTTTTTAAACACGGCAAGGTGAAAAGGGCCATTCTTGCTTTAAAGGCGCATAACTTTTTATGTTTTTGAGATTTAGTTAAAATTTTTATATCATCTTCTTGCCCATTTAAAATGCTACATTTGCATTTATAATTCGTTTGAGAAATGTTAAATTTGAAGAAAGTTATGTGCCTTTAAACGGCAAGGTGAACAGAGCACCCCGACCATCTTGTTTTAAAGGCTCATAACTTTCTTTAAGATCAACGTTTTGAATCGATTGAAAAATCAAAATGTAGCATACTTGTAAACGGGCCGGGNCGGGNTTTTTNNGGAATTTCNGAGGCCCGGCCCGGNCCGGCCCGGCGGGACTGTTATTCCACAAGTTCTGAAAATTTCAAAAACACATAAGGGGGACCCTTATGTGATTTTTTTCGATAAAAAAATTTTTTTCGAGTTTTTTCAAATATTTTTTGATCAAACAGACAAACAATCCAAAAAGCACAAAAAAATATAGAAAATTGTA</canonical>
            <polymorphic>TCTAGAAGATTCCTTCTTCTTGTTTTCTGTTTTTCCCCCCAAATTCAATTTCCCGCCGTTCCTTGGCCCCCTAAAGGGTGTCCCTGGACGCCTGCGTCCCTATTTTTCTGGACCATAAACCATTTGAGTCCTTCTGCCTCTAGTCACATTTCCCAAAAAAATCCCAAGAAATGTTCTTCCCAATAAAATTTTTCGCGCTTTTCTTGGTCGTTTTTGCCTTATGTGCCCATGGATTTGGCGTTATCCAGTCACCAATTAAAGCTTTTGAAATTGCCAAAAACCAACCCGATTGCCAGGAAAAACTGACCAATTATGCCATGTCAATGTGTGCTGGAGAGTGTAAGGAAGGTTTTGAAGGTGAGGGACGATCTTTAAAGCGCATAACTATCTTCGAACTTGATATTTTGGATGAATTAATACATAAAAACGAGCATCGTAAAAGATCTTCAAACTGGCGTAAAAATCATAAATAATGCTCTAAAACGAAAAAAGTTATGCGYTTTTAAACACGGCAAGGTGAAAAGGGCCATTCTTGCTTTAAAGGCGCATAACTTTTTATGTTTTTGAGATTTAGTTAAAATTTTTATATCATCTTCTTGCCCATTTAAAATGCTACATTTGCATTTATAATTCGTTTGAGAAATGTTAAATTTGAAGAAAGTTATGTGCCTTTAAACGGCAAGGTGAACAGAGCACCCCGACCATCTTGTTTTAAAGGCTCATAACTTTCTTTAAGATCAACGTTTTGAATCGATTGAAAAATCAAAATGTAGCATACTTGTAAACGGGCCGGGNCGGGNTTTTTNNGGAATTTCNGAGGCCCGGCCCGGNCCGGCCCGGCGGGACTGTTATTCCACAAGTTCTGAAAATTTCAAAAACACATAAGGGGGACCCTTATGTGATTTTTTTCGATAAAAAAATTTTTTTCGAGTTTTTTCAAATATTTTTTGATCAAACAGACAAACAATCCAAAAAGCACAAAAAAATATAGAAAATTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTGGCGTAAAAATCATAAA</pcr_primer_p1>
		<pcr_primer_p2>TGGATTGTTTGTCTGTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>523</pcr_amplicon_size>
		<canonical_amplicon>AAACTGGCGTAAAAATCATAAATAATGCTCTAAAACGAAAAAAGTTATGCGTTTTTAAACACGGCAAGGTGAAAAGGGCCATTCTTGCTTTAAAGGCGCATAACTTTTTATGTTTTTGAGATTTAGTTAAAATTTTTATATCATCTTCTTGCCCATTTAAAATGCTACATTTGCATTTATAATTCGTTTGAGAAATGTTAAATTTGAAGAAAGTTATGTGCCTTTAAACGGCAAGGTGAACAGAGCACCCCGACCATCTTGTTTTAAAGGCTCATAACTTTCTTTAAGATCAACGTTTTGAATCGATTGAAAAATCAAAATGTAGCATACTTGTAAACGGGCCGGGNCGGGNTTTTTNNGGAATTTCNGAGGCCCGGCCCGGNCCGGCCCGGCGGGACTGTTATTCCACAAGTTCTGAAAATTTCAAAAACACATAAGGGGGACCCTTATGTGATTTTTTTCGATAAAAAAATTTTTTTCGAGTTTTTTCAAATATTTTTTGATCAAACAGACAAACAATCCA</canonical_amplicon>
		<polymorphic_amplicon>AAACTGGCGTAAAAATCATAAATAATGCTCTAAAACGAAAAAAGTTATGCGYTTTTAAACACGGCAAGGTGAAAAGGGCCATTCTTGCTTTAAAGGCGCATAACTTTTTATGTTTTTGAGATTTAGTTAAAATTTTTATATCATCTTCTTGCCCATTTAAAATGCTACATTTGCATTTATAATTCGTTTGAGAAATGTTAAATTTGAAGAAAGTTATGTGCCTTTAAACGGCAAGGTGAACAGAGCACCCCGACCATCTTGTTTTAAAGGCTCATAACTTTCTTTAAGATCAACGTTTTGAATCGATTGAAAAATCAAAATGTAGCATACTTGTAAACGGGCCGGGNCGGGNTTTTTNNGGAATTTCNGAGGCCCGGCCCGGNCCGGCCCGGCGGGACTGTTATTCCACAAGTTCTGAAAATTTCAAAAACACATAAGGGGGACCCTTATGTGATTTTTTTCGATAAAAAAATTTTTTTCGAGTTTTTTCAAATATTTTTTGATCAAACAGACAAACAATCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28928</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>16298</contig_pos>
        <strand></strand>
        <context>agttatgcgy[T/C]tttaaacacg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACTGGCGTAAAAATCATAAATAATGCTCTAAAACGAAAAAAGTTATGCGT</left_flank>
        <right_flank>TTTAAACACGGCAAGGTGAAAAGGGCCATTCTTGCTTTAAAGGCGCATAA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGAAGATTCCTTCTTCTTGTTTTCTGTTTTTCCCCCCAAATTCAATTTCCCGCCGTTCCTTGGCCCCCTAAAGGGTGTCCCTGGACGCCTGCGTCCCTATTTTTCTGGACCATAAACCATTTGAGTCCTTCTGCCTCTAGTCACATTTCCCAAAAAAATCCCAAGAAATGTTCTTCCCAATAAAATTTTTCGCGCTTTTCTTGGTCGTTTTTGCCTTATGTGCCCATGGATTTGGCGTTATCCAGTCACCAATTAAAGCTTTTGAAATTGCCAAAAACCAACCCGATTGCCAGGAAAAACTGACCAATTATGCCATGTCAATGTGTGCTGGAGAGTGTAAGGAAGGTTTTGAAGGTGAGGGACGATCTTTAAAGCGCATAACTATCTTCGAACTTGATATTTTGGATGAATTAATACATAAAAACGAGCATCGTAAAAGATCTTCAAACTGGCGTAAAAATCATAAATAATGCTCTAAAACGAAAAAAGTTATGCGTTTTTAAACACGGCAAGGTGAAAAGGGCCATTCTTGCTTTAAAGGCGCATAACTTTTTATGTTTTTGAGATTTAGTTAAAATTTTTATATCATCTTCTTGCCCATTTAAAATGCTACATTTGCATTTATAATTCGTTTGAGAAATGTTAAATTTGAAGAAAGTTATGTGCCTTTAAACGGCAAGGTGAACAGAGCACCCCGACCATCTTGTTTTAAAGGCTCATAACTTTCTTTAAGATCAACGTTTTGAATCGATTGAAAAATCAAAATGTAGCATACTTGTAAACGGGCCGGGNCGGGNTTTTTNNGGAATTTCNGAGGCCCGGCCCGGNCCGGCCCGGCGGGACTGTTATTCCACAAGTTCTGAAAATTTCAAAAACACATAAGGGGGACCCTTATGTGATTTTTTTCGATAAAAAAATTTTTTTCGAGTTTTTTCAAATATTTTTTGATCAAACAGACAAACAATCCAAAAAGCACAAAAAAATATAGAAAATTGTAT</canonical>
            <polymorphic>CTAGAAGATTCCTTCTTCTTGTTTTCTGTTTTTCCCCCCAAATTCAATTTCCCGCCGTTCCTTGGCCCCCTAAAGGGTGTCCCTGGACGCCTGCGTCCCTATTTTTCTGGACCATAAACCATTTGAGTCCTTCTGCCTCTAGTCACATTTCCCAAAAAAATCCCAAGAAATGTTCTTCCCAATAAAATTTTTCGCGCTTTTCTTGGTCGTTTTTGCCTTATGTGCCCATGGATTTGGCGTTATCCAGTCACCAATTAAAGCTTTTGAAATTGCCAAAAACCAACCCGATTGCCAGGAAAAACTGACCAATTATGCCATGTCAATGTGTGCTGGAGAGTGTAAGGAAGGTTTTGAAGGTGAGGGACGATCTTTAAAGCGCATAACTATCTTCGAACTTGATATTTTGGATGAATTAATACATAAAAACGAGCATCGTAAAAGATCTTCAAACTGGCGTAAAAATCATAAATAATGCTCTAAAACGAAAAAAGTTATGCGTYTTTAAACACGGCAAGGTGAAAAGGGCCATTCTTGCTTTAAAGGCGCATAACTTTTTATGTTTTTGAGATTTAGTTAAAATTTTTATATCATCTTCTTGCCCATTTAAAATGCTACATTTGCATTTATAATTCGTTTGAGAAATGTTAAATTTGAAGAAAGTTATGTGCCTTTAAACGGCAAGGTGAACAGAGCACCCCGACCATCTTGTTTTAAAGGCTCATAACTTTCTTTAAGATCAACGTTTTGAATCGATTGAAAAATCAAAATGTAGCATACTTGTAAACGGGCCGGGNCGGGNTTTTTNNGGAATTTCNGAGGCCCGGCCCGGNCCGGCCCGGCGGGACTGTTATTCCACAAGTTCTGAAAATTTCAAAAACACATAAGGGGGACCCTTATGTGATTTTTTTCGATAAAAAAATTTTTTTCGAGTTTTTTCAAATATTTTTTGATCAAACAGACAAACAATCCAAAAAGCACAAAAAAATATAGAAAATTGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTGGCGTAAAAATCATAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGGATTGTTTGTCTGTTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>523</pcr_amplicon_size>
		<canonical_amplicon>AAACTGGCGTAAAAATCATAAATAATGCTCTAAAACGAAAAAAGTTATGCGTTTTTAAACACGGCAAGGTGAAAAGGGCCATTCTTGCTTTAAAGGCGCATAACTTTTTATGTTTTTGAGATTTAGTTAAAATTTTTATATCATCTTCTTGCCCATTTAAAATGCTACATTTGCATTTATAATTCGTTTGAGAAATGTTAAATTTGAAGAAAGTTATGTGCCTTTAAACGGCAAGGTGAACAGAGCACCCCGACCATCTTGTTTTAAAGGCTCATAACTTTCTTTAAGATCAACGTTTTGAATCGATTGAAAAATCAAAATGTAGCATACTTGTAAACGGGCCGGGNCGGGNTTTTTNNGGAATTTCNGAGGCCCGGCCCGGNCCGGCCCGGCGGGACTGTTATTCCACAAGTTCTGAAAATTTCAAAAACACATAAGGGGGACCCTTATGTGATTTTTTTCGATAAAAAAATTTTTTTCGAGTTTTTTCAAATATTTTTTGATCAAACAGACAAACAATCCA</canonical_amplicon>
		<polymorphic_amplicon>AAACTGGCGTAAAAATCATAAATAATGCTCTAAAACGAAAAAAGTTATGCGTYTTTAAACACGGCAAGGTGAAAAGGGCCATTCTTGCTTTAAAGGCGCATAACTTTTTATGTTTTTGAGATTTAGTTAAAATTTTTATATCATCTTCTTGCCCATTTAAAATGCTACATTTGCATTTATAATTCGTTTGAGAAATGTTAAATTTGAAGAAAGTTATGTGCCTTTAAACGGCAAGGTGAACAGAGCACCCCGACCATCTTGTTTTAAAGGCTCATAACTTTCTTTAAGATCAACGTTTTGAATCGATTGAAAAATCAAAATGTAGCATACTTGTAAACGGGCCGGGNCGGGNTTTTTNNGGAATTTCNGAGGCCCGGCCCGGNCCGGCCCGGCGGGACTGTTATTCCACAAGTTCTGAAAATTTCAAAAACACATAAGGGGGACCCTTATGTGATTTTTTTCGATAAAAAAATTTTTTTCGAGTTTTTTCAAATATTTTTTGATCAAACAGACAAACAATCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28929</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>16322</contig_pos>
        <strand></strand>
        <context>aggtgaaaag[G/T]gccattctyg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCTCTAAAACGAAAAAAGTTATGCGTTTTTAAACACGGCAAGGTGAAAAG</left_flank>
        <right_flank>GCCATTCTTGCTTTAAAGGCGCATAACTTTTTATGTTTTTGAGATTTAGT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGTTTTTCCCCCCAAATTCAATTTCCCGCCGTTCCTTGGCCCCCTAAAGGGTGTCCCTGGACGCCTGCGTCCCTATTTTTCTGGACCATAAACCATTTGAGTCCTTCTGCCTCTAGTCACATTTCCCAAAAAAATCCCAAGAAATGTTCTTCCCAATAAAATTTTTCGCGCTTTTCTTGGTCGTTTTTGCCTTATGTGCCCATGGATTTGGCGTTATCCAGTCACCAATTAAAGCTTTTGAAATTGCCAAAAACCAACCCGATTGCCAGGAAAAACTGACCAATTATGCCATGTCAATGTGTGCTGGAGAGTGTAAGGAAGGTTTTGAAGGTGAGGGACGATCTTTAAAGCGCATAACTATCTTCGAACTTGATATTTTGGATGAATTAATACATAAAAACGAGCATCGTAAAAGATCTTCAAACTGGCGTAAAAATCATAAATAATGCTCTAAAACGAAAAAAGTTATGCGTTTTTAAACACGGCAAGGTGAAAAGGGCCATTCTTGCTTTAAAGGCGCATAACTTTTTATGTTTTTGAGATTTAGTTAAAATTTTTATATCATCTTCTTGCCCATTTAAAATGCTACATTTGCATTTATAATTCGTTTGAGAAATGTTAAATTTGAAGAAAGTTATGTGCCTTTAAACGGCAAGGTGAACAGAGCACCCCGACCATCTTGTTTTAAAGGCTCATAACTTTCTTTAAGATCAACGTTTTGAATCGATTGAAAAATCAAAATGTAGCATACTTGTAAACGGGCCGGGNCGGGNTTTTTNNGGAATTTCNGAGGCCCGGCCCGGNCCGGCCCGGCGGGACTGTTATTCCACAAGTTCTGAAAATTTCAAAAACACATAAGGGGGACCCTTATGTGATTTTTTTCGATAAAAAAATTTTTTTCGAGTTTTTTCAAATATTTTTTGATCAAACAGACAAACAATCCAAAAAGCACAAAAAAATATAGAAAATTGTATTAAGAGCTCAAAATTCGGTTCAAA</canonical>
            <polymorphic>TCTGTTTTTCCCCCCAAATTCAATTTCCCGCCGTTCCTTGGCCCCCTAAAGGGTGTCCCTGGACGCCTGCGTCCCTATTTTTCTGGACCATAAACCATTTGAGTCCTTCTGCCTCTAGTCACATTTCCCAAAAAAATCCCAAGAAATGTTCTTCCCAATAAAATTTTTCGCGCTTTTCTTGGTCGTTTTTGCCTTATGTGCCCATGGATTTGGCGTTATCCAGTCACCAATTAAAGCTTTTGAAATTGCCAAAAACCAACCCGATTGCCAGGAAAAACTGACCAATTATGCCATGTCAATGTGTGCTGGAGAGTGTAAGGAAGGTTTTGAAGGTGAGGGACGATCTTTAAAGCGCATAACTATCTTCGAACTTGATATTTTGGATGAATTAATACATAAAAACGAGCATCGTAAAAGATCTTCAAACTGGCGTAAAAATCATAAATAATGCTCTAAAACGAAAAAAGTTATGCGTTTTTAAACACGGCAAGGTGAAAAGKGCCATTCTTGCTTTAAAGGCGCATAACTTTTTATGTTTTTGAGATTTAGTTAAAATTTTTATATCATCTTCTTGCCCATTTAAAATGCTACATTTGCATTTATAATTCGTTTGAGAAATGTTAAATTTGAAGAAAGTTATGTGCCTTTAAACGGCAAGGTGAACAGAGCACCCCGACCATCTTGTTTTAAAGGCTCATAACTTTCTTTAAGATCAACGTTTTGAATCGATTGAAAAATCAAAATGTAGCATACTTGTAAACGGGCCGGGNCGGGNTTTTTNNGGAATTTCNGAGGCCCGGCCCGGNCCGGCCCGGCGGGACTGTTATTCCACAAGTTCTGAAAATTTCAAAAACACATAAGGGGGACCCTTATGTGATTTTTTTCGATAAAAAAATTTTTTTCGAGTTTTTTCAAATATTTTTTGATCAAACAGACAAACAATCCAAAAAGCACAAAAAAATATAGAAAATTGTATTAAGAGCTCAAAATTCGGTTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>414 263 136 55 45 40 32 5 5 5</canonical_bands>
                <polymorphic_bands>677 136 55 45 40 32 5 5 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>460 263 190 41 31 10 5</canonical_bands>
                <polymorphic_bands>723 190 41 31 10 5</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>265 195 192 172 71 41 31 18 10 5</canonical_bands>
                <polymorphic_bands>457 195 172 71 41 31 18 10 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTGGCGTAAAAATCATAAATAA</pcr_primer_p1>
		<pcr_primer_p2>TGGATTGTTTGTCTGTTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>521</pcr_amplicon_size>
		<canonical_amplicon>ACTGGCGTAAAAATCATAAATAATGCTCTAAAACGAAAAAAGTTATGCGTTTTTAAACACGGCAAGGTGAAAAGGGCCATTCTTGCTTTAAAGGCGCATAACTTTTTATGTTTTTGAGATTTAGTTAAAATTTTTATATCATCTTCTTGCCCATTTAAAATGCTACATTTGCATTTATAATTCGTTTGAGAAATGTTAAATTTGAAGAAAGTTATGTGCCTTTAAACGGCAAGGTGAACAGAGCACCCCGACCATCTTGTTTTAAAGGCTCATAACTTTCTTTAAGATCAACGTTTTGAATCGATTGAAAAATCAAAATGTAGCATACTTGTAAACGGGCCGGGNCGGGNTTTTTNNGGAATTTCNGAGGCCCGGCCCGGNCCGGCCCGGCGGGACTGTTATTCCACAAGTTCTGAAAATTTCAAAAACACATAAGGGGGACCCTTATGTGATTTTTTTCGATAAAAAAATTTTTTTCGAGTTTTTTCAAATATTTTTTGATCAAACAGACAAACAATCCA</canonical_amplicon>
		<polymorphic_amplicon>ACTGGCGTAAAAATCATAAATAATGCTCTAAAACGAAAAAAGTTATGCGTTTTTAAACACGGCAAGGTGAAAAGKGCCATTCTTGCTTTAAAGGCGCATAACTTTTTATGTTTTTGAGATTTAGTTAAAATTTTTATATCATCTTCTTGCCCATTTAAAATGCTACATTTGCATTTATAATTCGTTTGAGAAATGTTAAATTTGAAGAAAGTTATGTGCCTTTAAACGGCAAGGTGAACAGAGCACCCCGACCATCTTGTTTTAAAGGCTCATAACTTTCTTTAAGATCAACGTTTTGAATCGATTGAAAAATCAAAATGTAGCATACTTGTAAACGGGCCGGGNCGGGNTTTTTNNGGAATTTCNGAGGCCCGGCCCGGNCCGGCCCGGCGGGACTGTTATTCCACAAGTTCTGAAAATTTCAAAAACACATAAGGGGGACCCTTATGTGATTTTTTTCGATAAAAAAATTTTTTTCGAGTTTTTTCAAATATTTTTTGATCAAACAGACAAACAATCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28930</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>16331</contig_pos>
        <strand></strand>
        <context>gkgccattct[T/C]gctttaaagg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CGAAAAAAGTTATGCGTTTTTAAACACGGCAAGGTGAAAAGGGCCATTCT</left_flank>
        <right_flank>GCTTTAAAGGCGCATAACTTTTTATGTTTTTGAGATTTAGTTAAAATTTT</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCCCCAAATTCAATTTCCCGCCGTTCCTTGGCCCCCTAAAGGGTGTCCCTGGACGCCTGCGTCCCTATTTTTCTGGACCATAAACCATTTGAGTCCTTCTGCCTCTAGTCACATTTCCCAAAAAAATCCCAAGAAATGTTCTTCCCAATAAAATTTTTCGCGCTTTTCTTGGTCGTTTTTGCCTTATGTGCCCATGGATTTGGCGTTATCCAGTCACCAATTAAAGCTTTTGAAATTGCCAAAAACCAACCCGATTGCCAGGAAAAACTGACCAATTATGCCATGTCAATGTGTGCTGGAGAGTGTAAGGAAGGTTTTGAAGGTGAGGGACGATCTTTAAAGCGCATAACTATCTTCGAACTTGATATTTTGGATGAATTAATACATAAAAACGAGCATCGTAAAAGATCTTCAAACTGGCGTAAAAATCATAAATAATGCTCTAAAACGAAAAAAGTTATGCGTTTTTAAACACGGCAAGGTGAAAAGGGCCATTCTTGCTTTAAAGGCGCATAACTTTTTATGTTTTTGAGATTTAGTTAAAATTTTTATATCATCTTCTTGCCCATTTAAAATGCTACATTTGCATTTATAATTCGTTTGAGAAATGTTAAATTTGAAGAAAGTTATGTGCCTTTAAACGGCAAGGTGAACAGAGCACCCCGACCATCTTGTTTTAAAGGCTCATAACTTTCTTTAAGATCAACGTTTTGAATCGATTGAAAAATCAAAATGTAGCATACTTGTAAACGGGCCGGGNCGGGNTTTTTNNGGAATTTCNGAGGCCCGGCCCGGNCCGGCCCGGCGGGACTGTTATTCCACAAGTTCTGAAAATTTCAAAAACACATAAGGGGGACCCTTATGTGATTTTTTTCGATAAAAAAATTTTTTTCGAGTTTTTTCAAATATTTTTTGATCAAACAGACAAACAATCCAAAAAGCACAAAAAAATATAGAAAATTGTATTAAGAGCTCAAAATTCGGTTCAAAATGACAAAA</canonical>
            <polymorphic>CCCCCCAAATTCAATTTCCCGCCGTTCCTTGGCCCCCTAAAGGGTGTCCCTGGACGCCTGCGTCCCTATTTTTCTGGACCATAAACCATTTGAGTCCTTCTGCCTCTAGTCACATTTCCCAAAAAAATCCCAAGAAATGTTCTTCCCAATAAAATTTTTCGCGCTTTTCTTGGTCGTTTTTGCCTTATGTGCCCATGGATTTGGCGTTATCCAGTCACCAATTAAAGCTTTTGAAATTGCCAAAAACCAACCCGATTGCCAGGAAAAACTGACCAATTATGCCATGTCAATGTGTGCTGGAGAGTGTAAGGAAGGTTTTGAAGGTGAGGGACGATCTTTAAAGCGCATAACTATCTTCGAACTTGATATTTTGGATGAATTAATACATAAAAACGAGCATCGTAAAAGATCTTCAAACTGGCGTAAAAATCATAAATAATGCTCTAAAACGAAAAAAGTTATGCGTTTTTAAACACGGCAAGGTGAAAAGGGCCATTCTYGCTTTAAAGGCGCATAACTTTTTATGTTTTTGAGATTTAGTTAAAATTTTTATATCATCTTCTTGCCCATTTAAAATGCTACATTTGCATTTATAATTCGTTTGAGAAATGTTAAATTTGAAGAAAGTTATGTGCCTTTAAACGGCAAGGTGAACAGAGCACCCCGACCATCTTGTTTTAAAGGCTCATAACTTTCTTTAAGATCAACGTTTTGAATCGATTGAAAAATCAAAATGTAGCATACTTGTAAACGGGCCGGGNCGGGNTTTTTNNGGAATTTCNGAGGCCCGGCCCGGNCCGGCCCGGCGGGACTGTTATTCCACAAGTTCTGAAAATTTCAAAAACACATAAGGGGGACCCTTATGTGATTTTTTTCGATAAAAAAATTTTTTTCGAGTTTTTTCAAATATTTTTTGATCAAACAGACAAACAATCCAAAAAGCACAAAAAAATATAGAAAATTGTATTAAGAGCTCAAAATTCGGTTCAAAATGACAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTGGCGTAAAAATCATAAATAA</pcr_primer_p1>
		<pcr_primer_p2>TGGATTGTTTGTCTGTTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>521</pcr_amplicon_size>
		<canonical_amplicon>ACTGGCGTAAAAATCATAAATAATGCTCTAAAACGAAAAAAGTTATGCGTTTTTAAACACGGCAAGGTGAAAAGGGCCATTCTTGCTTTAAAGGCGCATAACTTTTTATGTTTTTGAGATTTAGTTAAAATTTTTATATCATCTTCTTGCCCATTTAAAATGCTACATTTGCATTTATAATTCGTTTGAGAAATGTTAAATTTGAAGAAAGTTATGTGCCTTTAAACGGCAAGGTGAACAGAGCACCCCGACCATCTTGTTTTAAAGGCTCATAACTTTCTTTAAGATCAACGTTTTGAATCGATTGAAAAATCAAAATGTAGCATACTTGTAAACGGGCCGGGNCGGGNTTTTTNNGGAATTTCNGAGGCCCGGCCCGGNCCGGCCCGGCGGGACTGTTATTCCACAAGTTCTGAAAATTTCAAAAACACATAAGGGGGACCCTTATGTGATTTTTTTCGATAAAAAAATTTTTTTCGAGTTTTTTCAAATATTTTTTGATCAAACAGACAAACAATCCA</canonical_amplicon>
		<polymorphic_amplicon>ACTGGCGTAAAAATCATAAATAATGCTCTAAAACGAAAAAAGTTATGCGTTTTTAAACACGGCAAGGTGAAAAGGGCCATTCTYGCTTTAAAGGCGCATAACTTTTTATGTTTTTGAGATTTAGTTAAAATTTTTATATCATCTTCTTGCCCATTTAAAATGCTACATTTGCATTTATAATTCGTTTGAGAAATGTTAAATTTGAAGAAAGTTATGTGCCTTTAAACGGCAAGGTGAACAGAGCACCCCGACCATCTTGTTTTAAAGGCTCATAACTTTCTTTAAGATCAACGTTTTGAATCGATTGAAAAATCAAAATGTAGCATACTTGTAAACGGGCCGGGNCGGGNTTTTTNNGGAATTTCNGAGGCCCGGCCCGGNCCGGCCCGGCGGGACTGTTATTCCACAAGTTCTGAAAATTTCAAAAACACATAAGGGGGACCCTTATGTGATTTTTTTCGATAAAAAAATTTTTTTCGAGTTTTTTCAAATATTTTTTGATCAAACAGACAAACAATCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28931</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>16371</contig_pos>
        <strand></strand>
        <context>ttgagattta[G/T]wtaaaatttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGGCCATTCTTGCTTTAAAGGCGCATAACTTTTTATGTTTTTGAGATTTA</left_flank>
        <right_flank>TTAAAATTTTTATATCATCTTCTTGCCCATTTAAAATGCTACATTTGCAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGGTGTCCCTGGACGCCTGCGTCCCTATTTTTCTGGACCATAAACCATTTGAGTCCTTCTGCCTCTAGTCACATTTCCCAAAAAAATCCCAAGAAATGTTCTTCCCAATAAAATTTTTCGCGCTTTTCTTGGTCGTTTTTGCCTTATGTGCCCATGGATTTGGCGTTATCCAGTCACCAATTAAAGCTTTTGAAATTGCCAAAAACCAACCCGATTGCCAGGAAAAACTGACCAATTATGCCATGTCAATGTGTGCTGGAGAGTGTAAGGAAGGTTTTGAAGGTGAGGGACGATCTTTAAAGCGCATAACTATCTTCGAACTTGATATTTTGGATGAATTAATACATAAAAACGAGCATCGTAAAAGATCTTCAAACTGGCGTAAAAATCATAAATAATGCTCTAAAACGAAAAAAGTTATGCGTTTTTAAACACGGCAAGGTGAAAAGGGCCATTCTTGCTTTAAAGGCGCATAACTTTTTATGTTTTTGAGATTTAGTTAAAATTTTTATATCATCTTCTTGCCCATTTAAAATGCTACATTTGCATTTATAATTCGTTTGAGAAATGTTAAATTTGAAGAAAGTTATGTGCCTTTAAACGGCAAGGTGAACAGAGCACCCCGACCATCTTGTTTTAAAGGCTCATAACTTTCTTTAAGATCAACGTTTTGAATCGATTGAAAAATCAAAATGTAGCATACTTGTAAACGGGCCGGGNCGGGNTTTTTNNGGAATTTCNGAGGCCCGGCCCGGNCCGGCCCGGCGGGACTGTTATTCCACAAGTTCTGAAAATTTCAAAAACACATAAGGGGGACCCTTATGTGATTTTTTTCGATAAAAAAATTTTTTTCGAGTTTTTTCAAATATTTTTTGATCAAACAGACAAACAATCCAAAAAGCACAAAAAAATATAGAAAATTGTATTAAGAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCTTGAAATTTTCCTCATGCCCGGGC</canonical>
            <polymorphic>AGGGTGTCCCTGGACGCCTGCGTCCCTATTTTTCTGGACCATAAACCATTTGAGTCCTTCTGCCTCTAGTCACATTTCCCAAAAAAATCCCAAGAAATGTTCTTCCCAATAAAATTTTTCGCGCTTTTCTTGGTCGTTTTTGCCTTATGTGCCCATGGATTTGGCGTTATCCAGTCACCAATTAAAGCTTTTGAAATTGCCAAAAACCAACCCGATTGCCAGGAAAAACTGACCAATTATGCCATGTCAATGTGTGCTGGAGAGTGTAAGGAAGGTTTTGAAGGTGAGGGACGATCTTTAAAGCGCATAACTATCTTCGAACTTGATATTTTGGATGAATTAATACATAAAAACGAGCATCGTAAAAGATCTTCAAACTGGCGTAAAAATCATAAATAATGCTCTAAAACGAAAAAAGTTATGCGTTTTTAAACACGGCAAGGTGAAAAGGGCCATTCTTGCTTTAAAGGCGCATAACTTTTTATGTTTTTGAGATTTAKTTAAAATTTTTATATCATCTTCTTGCCCATTTAAAATGCTACATTTGCATTTATAATTCGTTTGAGAAATGTTAAATTTGAAGAAAGTTATGTGCCTTTAAACGGCAAGGTGAACAGAGCACCCCGACCATCTTGTTTTAAAGGCTCATAACTTTCTTTAAGATCAACGTTTTGAATCGATTGAAAAATCAAAATGTAGCATACTTGTAAACGGGCCGGGNCGGGNTTTTTNNGGAATTTCNGAGGCCCGGCCCGGNCCGGCCCGGCGGGACTGTTATTCCACAAGTTCTGAAAATTTCAAAAACACATAAGGGGGACCCTTATGTGATTTTTTTCGATAAAAAAATTTTTTTCGAGTTTTTTCAAATATTTTTTGATCAAACAGACAAACAATCCAAAAAGCACAAAAAAATATAGAAAATTGTATTAAGAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCTTGAAATTTTCCTCATGCCCGGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTGGCGTAAAAATCATAAATAA</pcr_primer_p1>
		<pcr_primer_p2>TGGATTGTTTGTCTGTTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>521</pcr_amplicon_size>
		<canonical_amplicon>ACTGGCGTAAAAATCATAAATAATGCTCTAAAACGAAAAAAGTTATGCGTTTTTAAACACGGCAAGGTGAAAAGGGCCATTCTTGCTTTAAAGGCGCATAACTTTTTATGTTTTTGAGATTTAGTTAAAATTTTTATATCATCTTCTTGCCCATTTAAAATGCTACATTTGCATTTATAATTCGTTTGAGAAATGTTAAATTTGAAGAAAGTTATGTGCCTTTAAACGGCAAGGTGAACAGAGCACCCCGACCATCTTGTTTTAAAGGCTCATAACTTTCTTTAAGATCAACGTTTTGAATCGATTGAAAAATCAAAATGTAGCATACTTGTAAACGGGCCGGGNCGGGNTTTTTNNGGAATTTCNGAGGCCCGGCCCGGNCCGGCCCGGCGGGACTGTTATTCCACAAGTTCTGAAAATTTCAAAAACACATAAGGGGGACCCTTATGTGATTTTTTTCGATAAAAAAATTTTTTTCGAGTTTTTTCAAATATTTTTTGATCAAACAGACAAACAATCCA</canonical_amplicon>
		<polymorphic_amplicon>ACTGGCGTAAAAATCATAAATAATGCTCTAAAACGAAAAAAGTTATGCGTTTTTAAACACGGCAAGGTGAAAAGGGCCATTCTTGCTTTAAAGGCGCATAACTTTTTATGTTTTTGAGATTTAKTTAAAATTTTTATATCATCTTCTTGCCCATTTAAAATGCTACATTTGCATTTATAATTCGTTTGAGAAATGTTAAATTTGAAGAAAGTTATGTGCCTTTAAACGGCAAGGTGAACAGAGCACCCCGACCATCTTGTTTTAAAGGCTCATAACTTTCTTTAAGATCAACGTTTTGAATCGATTGAAAAATCAAAATGTAGCATACTTGTAAACGGGCCGGGNCGGGNTTTTTNNGGAATTTCNGAGGCCCGGCCCGGNCCGGCCCGGCGGGACTGTTATTCCACAAGTTCTGAAAATTTCAAAAACACATAAGGGGGACCCTTATGTGATTTTTTTCGATAAAAAAATTTTTTTCGAGTTTTTTCAAATATTTTTTGATCAAACAGACAAACAATCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28932</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>16372</contig_pos>
        <strand></strand>
        <context>tgagatttak[T/A]taaaattttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GGCCATTCTTGCTTTAAAGGCGCATAACTTTTTATGTTTTTGAGATTTAG</left_flank>
        <right_flank>TAAAATTTTTATATCATCTTCTTGCCCATTTAAAATGCTACATTTGCATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGTGTCCCTGGACGCCTGCGTCCCTATTTTTCTGGACCATAAACCATTTGAGTCCTTCTGCCTCTAGTCACATTTCCCAAAAAAATCCCAAGAAATGTTCTTCCCAATAAAATTTTTCGCGCTTTTCTTGGTCGTTTTTGCCTTATGTGCCCATGGATTTGGCGTTATCCAGTCACCAATTAAAGCTTTTGAAATTGCCAAAAACCAACCCGATTGCCAGGAAAAACTGACCAATTATGCCATGTCAATGTGTGCTGGAGAGTGTAAGGAAGGTTTTGAAGGTGAGGGACGATCTTTAAAGCGCATAACTATCTTCGAACTTGATATTTTGGATGAATTAATACATAAAAACGAGCATCGTAAAAGATCTTCAAACTGGCGTAAAAATCATAAATAATGCTCTAAAACGAAAAAAGTTATGCGTTTTTAAACACGGCAAGGTGAAAAGGGCCATTCTTGCTTTAAAGGCGCATAACTTTTTATGTTTTTGAGATTTAGTTAAAATTTTTATATCATCTTCTTGCCCATTTAAAATGCTACATTTGCATTTATAATTCGTTTGAGAAATGTTAAATTTGAAGAAAGTTATGTGCCTTTAAACGGCAAGGTGAACAGAGCACCCCGACCATCTTGTTTTAAAGGCTCATAACTTTCTTTAAGATCAACGTTTTGAATCGATTGAAAAATCAAAATGTAGCATACTTGTAAACGGGCCGGGNCGGGNTTTTTNNGGAATTTCNGAGGCCCGGCCCGGNCCGGCCCGGCGGGACTGTTATTCCACAAGTTCTGAAAATTTCAAAAACACATAAGGGGGACCCTTATGTGATTTTTTTCGATAAAAAAATTTTTTTCGAGTTTTTTCAAATATTTTTTGATCAAACAGACAAACAATCCAAAAAGCACAAAAAAATATAGAAAATTGTATTAAGAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCTTGAAATTTTCCTCATGCCCGGGCC</canonical>
            <polymorphic>GGGTGTCCCTGGACGCCTGCGTCCCTATTTTTCTGGACCATAAACCATTTGAGTCCTTCTGCCTCTAGTCACATTTCCCAAAAAAATCCCAAGAAATGTTCTTCCCAATAAAATTTTTCGCGCTTTTCTTGGTCGTTTTTGCCTTATGTGCCCATGGATTTGGCGTTATCCAGTCACCAATTAAAGCTTTTGAAATTGCCAAAAACCAACCCGATTGCCAGGAAAAACTGACCAATTATGCCATGTCAATGTGTGCTGGAGAGTGTAAGGAAGGTTTTGAAGGTGAGGGACGATCTTTAAAGCGCATAACTATCTTCGAACTTGATATTTTGGATGAATTAATACATAAAAACGAGCATCGTAAAAGATCTTCAAACTGGCGTAAAAATCATAAATAATGCTCTAAAACGAAAAAAGTTATGCGTTTTTAAACACGGCAAGGTGAAAAGGGCCATTCTTGCTTTAAAGGCGCATAACTTTTTATGTTTTTGAGATTTAGWTAAAATTTTTATATCATCTTCTTGCCCATTTAAAATGCTACATTTGCATTTATAATTCGTTTGAGAAATGTTAAATTTGAAGAAAGTTATGTGCCTTTAAACGGCAAGGTGAACAGAGCACCCCGACCATCTTGTTTTAAAGGCTCATAACTTTCTTTAAGATCAACGTTTTGAATCGATTGAAAAATCAAAATGTAGCATACTTGTAAACGGGCCGGGNCGGGNTTTTTNNGGAATTTCNGAGGCCCGGCCCGGNCCGGCCCGGCGGGACTGTTATTCCACAAGTTCTGAAAATTTCAAAAACACATAAGGGGGACCCTTATGTGATTTTTTTCGATAAAAAAATTTTTTTCGAGTTTTTTCAAATATTTTTTGATCAAACAGACAAACAATCCAAAAAGCACAAAAAAATATAGAAAATTGTATTAAGAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCTTGAAATTTTCCTCATGCCCGGGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>269 181 116 89 74 42 41 40 37 35 30 26 20</canonical_bands>
                <polymorphic_bands>269 181 116 89 74 67 42 41 40 35 26 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTGGCGTAAAAATCATAAATAA</pcr_primer_p1>
		<pcr_primer_p2>TGGATTGTTTGTCTGTTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>521</pcr_amplicon_size>
		<canonical_amplicon>ACTGGCGTAAAAATCATAAATAATGCTCTAAAACGAAAAAAGTTATGCGTTTTTAAACACGGCAAGGTGAAAAGGGCCATTCTTGCTTTAAAGGCGCATAACTTTTTATGTTTTTGAGATTTAGTTAAAATTTTTATATCATCTTCTTGCCCATTTAAAATGCTACATTTGCATTTATAATTCGTTTGAGAAATGTTAAATTTGAAGAAAGTTATGTGCCTTTAAACGGCAAGGTGAACAGAGCACCCCGACCATCTTGTTTTAAAGGCTCATAACTTTCTTTAAGATCAACGTTTTGAATCGATTGAAAAATCAAAATGTAGCATACTTGTAAACGGGCCGGGNCGGGNTTTTTNNGGAATTTCNGAGGCCCGGCCCGGNCCGGCCCGGCGGGACTGTTATTCCACAAGTTCTGAAAATTTCAAAAACACATAAGGGGGACCCTTATGTGATTTTTTTCGATAAAAAAATTTTTTTCGAGTTTTTTCAAATATTTTTTGATCAAACAGACAAACAATCCA</canonical_amplicon>
		<polymorphic_amplicon>ACTGGCGTAAAAATCATAAATAATGCTCTAAAACGAAAAAAGTTATGCGTTTTTAAACACGGCAAGGTGAAAAGGGCCATTCTTGCTTTAAAGGCGCATAACTTTTTATGTTTTTGAGATTTAGWTAAAATTTTTATATCATCTTCTTGCCCATTTAAAATGCTACATTTGCATTTATAATTCGTTTGAGAAATGTTAAATTTGAAGAAAGTTATGTGCCTTTAAACGGCAAGGTGAACAGAGCACCCCGACCATCTTGTTTTAAAGGCTCATAACTTTCTTTAAGATCAACGTTTTGAATCGATTGAAAAATCAAAATGTAGCATACTTGTAAACGGGCCGGGNCGGGNTTTTTNNGGAATTTCNGAGGCCCGGCCCGGNCCGGCCCGGCGGGACTGTTATTCCACAAGTTCTGAAAATTTCAAAAACACATAAGGGGGACCCTTATGTGATTTTTTTCGATAAAAAAATTTTTTTCGAGTTTTTTCAAATATTTTTTGATCAAACAGACAAACAATCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28933</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>36654</contig_pos>
        <strand>+</strand>
        <context>CACTTCCTTA[C/G]TACCAATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACTTTTTCCAGATCGAAAAAATGCGCCGCCACATTCTATTCACTTCCTTA</left_flank>
        <right_flank>TACCAATTTTAGCTAGTTCTCTTCTTAGTTCAGATTTGACGTCGAACCAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTGTATCACAAAACTATCTACATTTTATTAGTTAACAAATTTTTAATATCTCTTACAGGGACCGAGATAATTATGCTCAAAAAAAAGGGAGTGATCGACACTTGCGACCACTTGGCTGAGCCATAACTTGGCTCAAAGTTGGAATTTTTTCTGATCTAAAAATGACAATATAAAACTTGTTAAGAGCTACAAACTGATATAAAATTGACTATCTTACTGTACTCTCCGCTTTGCTATCCTCCGTTTTCTCCTTCTATGCCACGCTTCCTCTTTAACAGCTCCTATGGACCCAATTCGCGTAGCGTAGTTAATTTTGTCTTGTACCATTTGATAGATCTCTTCATTTTCTACAGTATCCCTCTTACTAAACAAAACAATGTTGATCTCGAAAAGAGTTATGGGCCCGCAAACTTTGTTATTTTTTTGTTCCCCAAATTTTATATTCCAACTTTTTCCAGATCGAAAAAATGCGCCGCCACATTCTATTCACTTCCTTACTACCAATTTTAGCTAGTTCTCTTCTTAGTTCAGATTTGACGTCGAACCATCAAGGAGCCACGGGAACAGTAGGTGAGTAAAAACCAATAAATTCGTCAAAAAACTACCAAGATGGTCCAAAATTCATCGGAAATTCGCGTTTTTTTTTGAATTTTTGAGATAATTGAAAATTTGAAAGTATTTTTGTTTTAAAAACGCATTTAAAAATACACAATTTAGTTTAAAAATCAAGTTTCTAGCGTATCTAGAAGCCGAGATATATCCATTTGAAGTTGTGAGGCGAGAGACGCAGACAACGAGAGCACACTAACTGTCTGCGTCTCTTCAAAACTACAAACGGCTATATCTCGGCTTCCAGAAGTCCTGGAAAGTTGATTTTCTGACAGTTTTTTATTTTAAATTTCTTCGAAATTTTATATTTTATAAAAATTCAGAAAAATTCGGTTTTCGAAAATTTTCAAATCGTATAATTCCAATATTGTATAATATGAAGCATCAAA</canonical>
            <polymorphic>ATGTGTATCACAAAACTATCTACATTTTATTAGTTAACAAATTTTTAATATCTCTTACAGGGACCGAGATAATTATGCTCAAAAAAAAGGGAGTGATCGACACTTGCGACCACTTGGCTGAGCCATAACTTGGCTCAAAGTTGGAATTTTTTCTGATCTAAAAATGACAATATAAAACTTGTTAAGAGCTACAAACTGATATAAAATTGACTATCTTACTGTACTCTCCGCTTTGCTATCCTCCGTTTTCTCCTTCTATGCCACGCTTCCTCTTTAACAGCTCCTATGGACCCAATTCGCGTAGCGTAGTTAATTTTGTCTTGTACCATTTGATAGATCTCTTCATTTTCTACAGTATCCCTCTTACTAAACAAAACAATGTTGATCTCGAAAAGAGTTATGGGCCCGCAAACTTTGTTATTTTTTTGTTCCCCAAATTTTATATTCCAACTTTTTCCAGATCGAAAAAATGCGCCGCCACATTCTATTCACTTCCTTASTACCAATTTTAGCTAGTTCTCTTCTTAGTTCAGATTTGACGTCGAACCATCAAGGAGCCACGGGAACAGTAGGTGAGTAAAAACCAATAAATTCGTCAAAAAACTACCAAGATGGTCCAAAATTCATCGGAAATTCGCGTTTTTTTTTGAATTTTTGAGATAATTGAAAATTTGAAAGTATTTTTGTTTTAAAAACGCATTTAAAAATACACAATTTAGTTTAAAAATCAAGTTTCTAGCGTATCTAGAAGCCGAGATATATCCATTTGAAGTTGTGAGGCGAGAGACGCAGACAACGAGAGCACACTAACTGTCTGCGTCTCTTCAAAACTACAAACGGCTATATCTCGGCTTCCAGAAGTCCTGGAAAGTTGATTTTCTGACAGTTTTTTATTTTAAATTTCTTCGAAATTTTATATTTTATAAAAATTCAGAAAAATTCGGTTTTCGAAAATTTTCAAATCGTATAATTCCAATATTGTATAATATGAAGCATCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCATTTTCTACAGTATCCCTCT</pcr_primer_p1>
		<pcr_primer_p2>TGGTTTTTACTCACCTACTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTTCATTTTCTACAGTATCCCTCTTACTAAACAAAACAATGTTGATCTCGAAAAGAGTTATGGGCCCGCAAACTTTGTTATTTTTTTGTTCCCCAAATTTTATATTCCAACTTTTTCCAGATCGAAAAAATGCGCCGCCACATTCTATTCACTTCCTTACTACCAATTTTAGCTAGTTCTCTTCTTAGTTCAGATTTGACGTCGAACCATCAAGGAGCCACGGGAACAGTAGGTGAGTAAAAACCA</canonical_amplicon>
		<polymorphic_amplicon>CTTCATTTTCTACAGTATCCCTCTTACTAAACAAAACAATGTTGATCTCGAAAAGAGTTATGGGCCCGCAAACTTTGTTATTTTTTTGTTCCCCAAATTTTATATTCCAACTTTTTCCAGATCGAAAAAATGCGCCGCCACATTCTATTCACTTCCTTASTACCAATTTTAGCTAGTTCTCTTCTTAGTTCAGATTTGACGTCGAACCATCAAGGAGCCACGGGAACAGTAGGTGAGTAAAAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28934</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>36677</contig_pos>
        <strand>+</strand>
        <context>CTAGTTCTCT[C/T]CTTAGTTCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGCCGCCACATTCTATTCACTTCCTTACTACCAATTTTAGCTAGTTCTCT</left_flank>
        <right_flank>CTTAGTTCAGATTTGACGTCGAACCATCAAGGAGCCACGGGAACAGTAGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTATTAGTTAACAAATTTTTAATATCTCTTACAGGGACCGAGATAATTATGCTCAAAAAAAAGGGAGTGATCGACACTTGCGACCACTTGGCTGAGCCATAACTTGGCTCAAAGTTGGAATTTTTTCTGATCTAAAAATGACAATATAAAACTTGTTAAGAGCTACAAACTGATATAAAATTGACTATCTTACTGTACTCTCCGCTTTGCTATCCTCCGTTTTCTCCTTCTATGCCACGCTTCCTCTTTAACAGCTCCTATGGACCCAATTCGCGTAGCGTAGTTAATTTTGTCTTGTACCATTTGATAGATCTCTTCATTTTCTACAGTATCCCTCTTACTAAACAAAACAATGTTGATCTCGAAAAGAGTTATGGGCCCGCAAACTTTGTTATTTTTTTGTTCCCCAAATTTTATATTCCAACTTTTTCCAGATCGAAAAAATGCGCCGCCACATTCTATTCACTTCCTTACTACCAATTTTAGCTAGTTCTCTTCTTAGTTCAGATTTGACGTCGAACCATCAAGGAGCCACGGGAACAGTAGGTGAGTAAAAACCAATAAATTCGTCAAAAAACTACCAAGATGGTCCAAAATTCATCGGAAATTCGCGTTTTTTTTTGAATTTTTGAGATAATTGAAAATTTGAAAGTATTTTTGTTTTAAAAACGCATTTAAAAATACACAATTTAGTTTAAAAATCAAGTTTCTAGCGTATCTAGAAGCCGAGATATATCCATTTGAAGTTGTGAGGCGAGAGACGCAGACAACGAGAGCACACTAACTGTCTGCGTCTCTTCAAAACTACAAACGGCTATATCTCGGCTTCCAGAAGTCCTGGAAAGTTGATTTTCTGACAGTTTTTTATTTTAAATTTCTTCGAAATTTTATATTTTATAAAAATTCAGAAAAATTCGGTTTTCGAAAATTTTCAAATCGTATAATTCCAATATTGTATAATATGAAGCATCAAAATTGACGTATTTCGGTCCAAAAA</canonical>
            <polymorphic>ATTTTATTAGTTAACAAATTTTTAATATCTCTTACAGGGACCGAGATAATTATGCTCAAAAAAAAGGGAGTGATCGACACTTGCGACCACTTGGCTGAGCCATAACTTGGCTCAAAGTTGGAATTTTTTCTGATCTAAAAATGACAATATAAAACTTGTTAAGAGCTACAAACTGATATAAAATTGACTATCTTACTGTACTCTCCGCTTTGCTATCCTCCGTTTTCTCCTTCTATGCCACGCTTCCTCTTTAACAGCTCCTATGGACCCAATTCGCGTAGCGTAGTTAATTTTGTCTTGTACCATTTGATAGATCTCTTCATTTTCTACAGTATCCCTCTTACTAAACAAAACAATGTTGATCTCGAAAAGAGTTATGGGCCCGCAAACTTTGTTATTTTTTTGTTCCCCAAATTTTATATTCCAACTTTTTCCAGATCGAAAAAATGCGCCGCCACATTCTATTCACTTCCTTACTACCAATTTTAGCTAGTTCTCTYCTTAGTTCAGATTTGACGTCGAACCATCAAGGAGCCACGGGAACAGTAGGTGAGTAAAAACCAATAAATTCGTCAAAAAACTACCAAGATGGTCCAAAATTCATCGGAAATTCGCGTTTTTTTTTGAATTTTTGAGATAATTGAAAATTTGAAAGTATTTTTGTTTTAAAAACGCATTTAAAAATACACAATTTAGTTTAAAAATCAAGTTTCTAGCGTATCTAGAAGCCGAGATATATCCATTTGAAGTTGTGAGGCGAGAGACGCAGACAACGAGAGCACACTAACTGTCTGCGTCTCTTCAAAACTACAAACGGCTATATCTCGGCTTCCAGAAGTCCTGGAAAGTTGATTTTCTGACAGTTTTTTATTTTAAATTTCTTCGAAATTTTATATTTTATAAAAATTCAGAAAAATTCGGTTTTCGAAAATTTTCAAATCGTATAATTCCAATATTGTATAATATGAAGCATCAAAATTGACGTATTTCGGTCCAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCATTTTCTACAGTATCCCTCT</pcr_primer_p1>
		<pcr_primer_p2>TGGTTTTTACTCACCTACTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTTCATTTTCTACAGTATCCCTCTTACTAAACAAAACAATGTTGATCTCGAAAAGAGTTATGGGCCCGCAAACTTTGTTATTTTTTTGTTCCCCAAATTTTATATTCCAACTTTTTCCAGATCGAAAAAATGCGCCGCCACATTCTATTCACTTCCTTACTACCAATTTTAGCTAGTTCTCTTCTTAGTTCAGATTTGACGTCGAACCATCAAGGAGCCACGGGAACAGTAGGTGAGTAAAAACCA</canonical_amplicon>
		<polymorphic_amplicon>CTTCATTTTCTACAGTATCCCTCTTACTAAACAAAACAATGTTGATCTCGAAAAGAGTTATGGGCCCGCAAACTTTGTTATTTTTTTGTTCCCCAAATTTTATATTCCAACTTTTTCCAGATCGAAAAAATGCGCCGCCACATTCTATTCACTTCCTTACTACCAATTTTAGCTAGTTCTCTYCTTAGTTCAGATTTGACGTCGAACCATCAAGGAGCCACGGGAACAGTAGGTGAGTAAAAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28935</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>36752</contig_pos>
        <strand>+</strand>
        <context>TAAATTCGTC[A/T]AAAAACTACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATCAAGGAGCCACGGGAACAGTAGGTGAGTAAAAACCAATAAATTCGTC</left_flank>
        <right_flank>AAAAACTACCAAGATGGTCCAAAATTCATCGGAAATTCGCGTTTTTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACACTTGCGACCACTTGGCTGAGCCATAACTTGGCTCAAAGTTGGAATTTTTTCTGATCTAAAAATGACAATATAAAACTTGTTAAGAGCTACAAACTGATATAAAATTGACTATCTTACTGTACTCTCCGCTTTGCTATCCTCCGTTTTCTCCTTCTATGCCACGCTTCCTCTTTAACAGCTCCTATGGACCCAATTCGCGTAGCGTAGTTAATTTTGTCTTGTACCATTTGATAGATCTCTTCATTTTCTACAGTATCCCTCTTACTAAACAAAACAATGTTGATCTCGAAAAGAGTTATGGGCCCGCAAACTTTGTTATTTTTTTGTTCCCCAAATTTTATATTCCAACTTTTTCCAGATCGAAAAAATGCGCCGCCACATTCTATTCACTTCCTTACTACCAATTTTAGCTAGTTCTCTTCTTAGTTCAGATTTGACGTCGAACCATCAAGGAGCCACGGGAACAGTAGGTGAGTAAAAACCAATAAATTCGTCAAAAAACTACCAAGATGGTCCAAAATTCATCGGAAATTCGCGTTTTTTTTTGAATTTTTGAGATAATTGAAAATTTGAAAGTATTTTTGTTTTAAAAACGCATTTAAAAATACACAATTTAGTTTAAAAATCAAGTTTCTAGCGTATCTAGAAGCCGAGATATATCCATTTGAAGTTGTGAGGCGAGAGACGCAGACAACGAGAGCACACTAACTGTCTGCGTCTCTTCAAAACTACAAACGGCTATATCTCGGCTTCCAGAAGTCCTGGAAAGTTGATTTTCTGACAGTTTTTTATTTTAAATTTCTTCGAAATTTTATATTTTATAAAAATTCAGAAAAATTCGGTTTTCGAAAATTTTCAAATCGTATAATTCCAATATTGTATAATATGAAGCATCAAAATTGACGTATTTCGGTCCAAAAATCAAGTTTCTAGCTCATCTGGGAGCTGAGATATAGCGATTTGAAGTTTTGAAGCGAGAGACGCAGACAACGAGAA</canonical>
            <polymorphic>GACACTTGCGACCACTTGGCTGAGCCATAACTTGGCTCAAAGTTGGAATTTTTTCTGATCTAAAAATGACAATATAAAACTTGTTAAGAGCTACAAACTGATATAAAATTGACTATCTTACTGTACTCTCCGCTTTGCTATCCTCCGTTTTCTCCTTCTATGCCACGCTTCCTCTTTAACAGCTCCTATGGACCCAATTCGCGTAGCGTAGTTAATTTTGTCTTGTACCATTTGATAGATCTCTTCATTTTCTACAGTATCCCTCTTACTAAACAAAACAATGTTGATCTCGAAAAGAGTTATGGGCCCGCAAACTTTGTTATTTTTTTGTTCCCCAAATTTTATATTCCAACTTTTTCCAGATCGAAAAAATGCGCCGCCACATTCTATTCACTTCCTTACTACCAATTTTAGCTAGTTCTCTTCTTAGTTCAGATTTGACGTCGAACCATCAAGGAGCCACGGGAACAGTAGGTGAGTAAAAACCAATAAATTCGTCWAAAAACTACCAAGATGGTCCAAAATTCATCGGAAATTCGCGTTTTTTTTTGAATTTTTGAGATAATTGAAAATTTGAAAGTATTTTTGTTTTAAAAACGCATTTAAAAATACACAATTTAGTTTAAAAATCAAGTTTCTAGCGTATCTAGAAGCCGAGATATATCCATTTGAAGTTGTGAGGCGAGAGACGCAGACAACGAGAGCACACTAACTGTCTGCGTCTCTTCAAAACTACAAACGGCTATATCTCGGCTTCCAGAAGTCCTGGAAAGTTGATTTTCTGACAGTTTTTTATTTTAAATTTCTTCGAAATTTTATATTTTATAAAAATTCAGAAAAATTCGGTTTTCGAAAATTTTCAAATCGTATAATTCCAATATTGTATAATATGAAGCATCAAAATTGACGTATTTCGGTCCAAAAATCAAGTTTCTAGCTCATCTGGGAGCTGAGATATAGCGATTTGAAGTTTTGAAGCGAGAGACGCAGACAACGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAATTTTATATTCCAACTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTTCAAATTTTCAATTATCTCAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CCAAATTTTATATTCCAACTTTTTCCAGATCGAAAAAATGCGCCGCCACATTCTATTCACTTCCTTACTACCAATTTTAGCTAGTTCTCTTCTTAGTTCAGATTTGACGTCGAACCATCAAGGAGCCACGGGAACAGTAGGTGAGTAAAAACCAATAAATTCGTCAAAAAACTACCAAGATGGTCCAAAATTCATCGGAAATTCGCGTTTTTTTTTGAATTTTTGAGATAATTGAAAATTTGAAAG</canonical_amplicon>
		<polymorphic_amplicon>CCAAATTTTATATTCCAACTTTTTCCAGATCGAAAAAATGCGCCGCCACATTCTATTCACTTCCTTACTACCAATTTTAGCTAGTTCTCTTCTTAGTTCAGATTTGACGTCGAACCATCAAGGAGCCACGGGAACAGTAGGTGAGTAAAAACCAATAAATTCGTCWAAAAACTACCAAGATGGTCCAAAATTCATCGGAAATTCGCGTTTTTTTTTGAATTTTTGAGATAATTGAAAATTTGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28936</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>36794</contig_pos>
        <strand>+</strand>
        <context>GAAATTCGCG[G/T]TTTTTTTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTCGTCAAAAAACTACCAAGATGGTCCAAAATTCATCGGAAATTCGCG</left_flank>
        <right_flank>TTTTTTTTGAATTTTTGAGATAATTGAAAATTTGAAAGTATTTTTGTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGAATTTTTTCTGATCTAAAAATGACAATATAAAACTTGTTAAGAGCTACAAACTGATATAAAATTGACTATCTTACTGTACTCTCCGCTTTGCTATCCTCCGTTTTCTCCTTCTATGCCACGCTTCCTCTTTAACAGCTCCTATGGACCCAATTCGCGTAGCGTAGTTAATTTTGTCTTGTACCATTTGATAGATCTCTTCATTTTCTACAGTATCCCTCTTACTAAACAAAACAATGTTGATCTCGAAAAGAGTTATGGGCCCGCAAACTTTGTTATTTTTTTGTTCCCCAAATTTTATATTCCAACTTTTTCCAGATCGAAAAAATGCGCCGCCACATTCTATTCACTTCCTTACTACCAATTTTAGCTAGTTCTCTTCTTAGTTCAGATTTGACGTCGAACCATCAAGGAGCCACGGGAACAGTAGGTGAGTAAAAACCAATAAATTCGTCAAAAAACTACCAAGATGGTCCAAAATTCATCGGAAATTCGCGTTTTTTTTTGAATTTTTGAGATAATTGAAAATTTGAAAGTATTTTTGTTTTAAAAACGCATTTAAAAATACACAATTTAGTTTAAAAATCAAGTTTCTAGCGTATCTAGAAGCCGAGATATATCCATTTGAAGTTGTGAGGCGAGAGACGCAGACAACGAGAGCACACTAACTGTCTGCGTCTCTTCAAAACTACAAACGGCTATATCTCGGCTTCCAGAAGTCCTGGAAAGTTGATTTTCTGACAGTTTTTTATTTTAAATTTCTTCGAAATTTTATATTTTATAAAAATTCAGAAAAATTCGGTTTTCGAAAATTTTCAAATCGTATAATTCCAATATTGTATAATATGAAGCATCAAAATTGACGTATTTCGGTCCAAAAATCAAGTTTCTAGCTCATCTGGGAGCTGAGATATAGCGATTTGAAGTTTTGAAGCGAGAGACGCAGACAACGAGAACAATCTAACCGTCTGCGTCTCTCCAAAATTTTGAGAGGCTAT</canonical>
            <polymorphic>TTGGAATTTTTTCTGATCTAAAAATGACAATATAAAACTTGTTAAGAGCTACAAACTGATATAAAATTGACTATCTTACTGTACTCTCCGCTTTGCTATCCTCCGTTTTCTCCTTCTATGCCACGCTTCCTCTTTAACAGCTCCTATGGACCCAATTCGCGTAGCGTAGTTAATTTTGTCTTGTACCATTTGATAGATCTCTTCATTTTCTACAGTATCCCTCTTACTAAACAAAACAATGTTGATCTCGAAAAGAGTTATGGGCCCGCAAACTTTGTTATTTTTTTGTTCCCCAAATTTTATATTCCAACTTTTTCCAGATCGAAAAAATGCGCCGCCACATTCTATTCACTTCCTTACTACCAATTTTAGCTAGTTCTCTTCTTAGTTCAGATTTGACGTCGAACCATCAAGGAGCCACGGGAACAGTAGGTGAGTAAAAACCAATAAATTCGTCAAAAAACTACCAAGATGGTCCAAAATTCATCGGAAATTCGCGKTTTTTTTTGAATTTTTGAGATAATTGAAAATTTGAAAGTATTTTTGTTTTAAAAACGCATTTAAAAATACACAATTTAGTTTAAAAATCAAGTTTCTAGCGTATCTAGAAGCCGAGATATATCCATTTGAAGTTGTGAGGCGAGAGACGCAGACAACGAGAGCACACTAACTGTCTGCGTCTCTTCAAAACTACAAACGGCTATATCTCGGCTTCCAGAAGTCCTGGAAAGTTGATTTTCTGACAGTTTTTTATTTTAAATTTCTTCGAAATTTTATATTTTATAAAAATTCAGAAAAATTCGGTTTTCGAAAATTTTCAAATCGTATAATTCCAATATTGTATAATATGAAGCATCAAAATTGACGTATTTCGGTCCAAAAATCAAGTTTCTAGCTCATCTGGGAGCTGAGATATAGCGATTTGAAGTTTTGAAGCGAGAGACGCAGACAACGAGAACAATCTAACCGTCTGCGTCTCTCCAAAATTTTGAGAGGCTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGAACAGTAGGTGAGTAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CAATATTGGAATTATACGATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>420</pcr_amplicon_size>
		<canonical_amplicon>GGGAACAGTAGGTGAGTAAAAACCAATAAATTCGTCAAAAAACTACCAAGATGGTCCAAAATTCATCGGAAATTCGCGTTTTTTTTTGAATTTTTGAGATAATTGAAAATTTGAAAGTATTTTTGTTTTAAAAACGCATTTAAAAATACACAATTTAGTTTAAAAATCAAGTTTCTAGCGTATCTAGAAGCCGAGATATATCCATTTGAAGTTGTGAGGCGAGAGACGCAGACAACGAGAGCACACTAACTGTCTGCGTCTCTTCAAAACTACAAACGGCTATATCTCGGCTTCCAGAAGTCCTGGAAAGTTGATTTTCTGACAGTTTTTTATTTTAAATTTCTTCGAAATTTTATATTTTATAAAAATTCAGAAAAATTCGGTTTTCGAAAATTTTCAAATCGTATAATTCCAATATTG</canonical_amplicon>
		<polymorphic_amplicon>GGGAACAGTAGGTGAGTAAAAACCAATAAATTCGTCAAAAAACTACCAAGATGGTCCAAAATTCATCGGAAATTCGCGKTTTTTTTTGAATTTTTGAGATAATTGAAAATTTGAAAGTATTTTTGTTTTAAAAACGCATTTAAAAATACACAATTTAGTTTAAAAATCAAGTTTCTAGCGTATCTAGAAGCCGAGATATATCCATTTGAAGTTGTGAGGCGAGAGACGCAGACAACGAGAGCACACTAACTGTCTGCGTCTCTTCAAAACTACAAACGGCTATATCTCGGCTTCCAGAAGTCCTGGAAAGTTGATTTTCTGACAGTTTTTTATTTTAAATTTCTTCGAAATTTTATATTTTATAAAAATTCAGAAAAATTCGGTTTTCGAAAATTTTCAAATCGTATAATTCCAATATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28937</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>36836</contig_pos>
        <strand></strand>
        <context>TTGAAAGTAT[T/G]TTTGTTTTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AATTCGCGTTTTTTTTTGAATTTTTGAGATAATTGAAAATTTGAAAGTAT</left_flank>
        <right_flank>TTTGTTTTAAAAACGCATTTAAAAATACACAATTTAGTTTAAAAATCAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGAGCTACAAACTGATATAAAATTGACTATCTTACTGTACTCTCCGCTTTGCTATCCTCCGTTTTCTCCTTCTATGCCACGCTTCCTCTTTAACAGCTCCTATGGACCCAATTCGCGTAGCGTAGTTAATTTTGTCTTGTACCATTTGATAGATCTCTTCATTTTCTACAGTATCCCTCTTACTAAACAAAACAATGTTGATCTCGAAAAGAGTTATGGGCCCGCAAACTTTGTTATTTTTTTGTTCCCCAAATTTTATATTCCAACTTTTTCCAGATCGAAAAAATGCGCCGCCACATTCTATTCACTTCCTTACTACCAATTTTAGCTAGTTCTCTTCTTAGTTCAGATTTGACGTCGAACCATCAAGGAGCCACGGGAACAGTAGGTGAGTAAAAACCAATAAATTCGTCAAAAAACTACCAAGATGGTCCAAAATTCATCGGAAATTCGCGTTTTTTTTTGAATTTTTGAGATAATTGAAAATTTGAAAGTATTTTTGTTTTAAAAACGCATTTAAAAATACACAATTTAGTTTAAAAATCAAGTTTCTAGCGTATCTAGAAGCCGAGATATATCCATTTGAAGTTGTGAGGCGAGAGACGCAGACAACGAGAGCACACTAACTGTCTGCGTCTCTTCAAAACTACAAACGGCTATATCTCGGCTTCCAGAAGTCCTGGAAAGTTGATTTTCTGACAGTTTTTTATTTTAAATTTCTTCGAAATTTTATATTTTATAAAAATTCAGAAAAATTCGGTTTTCGAAAATTTTCAAATCGTATAATTCCAATATTGTATAATATGAAGCATCAAAATTGACGTATTTCGGTCCAAAAATCAAGTTTCTAGCTCATCTGGGAGCTGAGATATAGCGATTTGAAGTTTTGAAGCGAGAGACGCAGACAACGAGAACAATCTAACCGTCTGCGTCTCTCCAAAATTTTGAGAGGCTATATCTCGGCTCCGAGATGAGCTAGAAAGTTGGTTTTTTGACAG</canonical>
            <polymorphic>TAAGAGCTACAAACTGATATAAAATTGACTATCTTACTGTACTCTCCGCTTTGCTATCCTCCGTTTTCTCCTTCTATGCCACGCTTCCTCTTTAACAGCTCCTATGGACCCAATTCGCGTAGCGTAGTTAATTTTGTCTTGTACCATTTGATAGATCTCTTCATTTTCTACAGTATCCCTCTTACTAAACAAAACAATGTTGATCTCGAAAAGAGTTATGGGCCCGCAAACTTTGTTATTTTTTTGTTCCCCAAATTTTATATTCCAACTTTTTCCAGATCGAAAAAATGCGCCGCCACATTCTATTCACTTCCTTACTACCAATTTTAGCTAGTTCTCTTCTTAGTTCAGATTTGACGTCGAACCATCAAGGAGCCACGGGAACAGTAGGTGAGTAAAAACCAATAAATTCGTCAAAAAACTACCAAGATGGTCCAAAATTCATCGGAAATTCGCGTTTTTTTTTGAATTTTTGAGATAATTGAAAATTTGAAAGTATKTTTGTTTTAAAAACGCATTTAAAAATACACAATTTAGTTTAAAAATCAAGTTTCTAGCGTATCTAGAAGCCGAGATATATCCATTTGAAGTTGTGAGGCGAGAGACGCAGACAACGAGAGCACACTAACTGTCTGCGTCTCTTCAAAACTACAAACGGCTATATCTCGGCTTCCAGAAGTCCTGGAAAGTTGATTTTCTGACAGTTTTTTATTTTAAATTTCTTCGAAATTTTATATTTTATAAAAATTCAGAAAAATTCGGTTTTCGAAAATTTTCAAATCGTATAATTCCAATATTGTATAATATGAAGCATCAAAATTGACGTATTTCGGTCCAAAAATCAAGTTTCTAGCTCATCTGGGAGCTGAGATATAGCGATTTGAAGTTTTGAAGCGAGAGACGCAGACAACGAGAACAATCTAACCGTCTGCGTCTCTCCAAAATTTTGAGAGGCTATATCTCGGCTCCGAGATGAGCTAGAAAGTTGGTTTTTTGACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGATGGTCCAAAATTCAT</pcr_primer_p1>
		<pcr_primer_p2>CAATATTGGAATTATACGATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>374</pcr_amplicon_size>
		<canonical_amplicon>CAAGATGGTCCAAAATTCATCGGAAATTCGCGTTTTTTTTTGAATTTTTGAGATAATTGAAAATTTGAAAGTATTTTTGTTTTAAAAACGCATTTAAAAATACACAATTTAGTTTAAAAATCAAGTTTCTAGCGTATCTAGAAGCCGAGATATATCCATTTGAAGTTGTGAGGCGAGAGACGCAGACAACGAGAGCACACTAACTGTCTGCGTCTCTTCAAAACTACAAACGGCTATATCTCGGCTTCCAGAAGTCCTGGAAAGTTGATTTTCTGACAGTTTTTTATTTTAAATTTCTTCGAAATTTTATATTTTATAAAAATTCAGAAAAATTCGGTTTTCGAAAATTTTCAAATCGTATAATTCCAATATTG</canonical_amplicon>
		<polymorphic_amplicon>CAAGATGGTCCAAAATTCATCGGAAATTCGCGTTTTTTTTTGAATTTTTGAGATAATTGAAAATTTGAAAGTATKTTTGTTTTAAAAACGCATTTAAAAATACACAATTTAGTTTAAAAATCAAGTTTCTAGCGTATCTAGAAGCCGAGATATATCCATTTGAAGTTGTGAGGCGAGAGACGCAGACAACGAGAGCACACTAACTGTCTGCGTCTCTTCAAAACTACAAACGGCTATATCTCGGCTTCCAGAAGTCCTGGAAAGTTGATTTTCTGACAGTTTTTTATTTTAAATTTCTTCGAAATTTTATATTTTATAAAAATTCAGAAAAATTCGGTTTTCGAAAATTTTCAAATCGTATAATTCCAATATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28938</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>36868</contig_pos>
        <strand></strand>
        <context>AAAAtacaca[A/T]tttagtytaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGAAAATTTGAAAGTATTTTTGTTTTAAAAACGCATTTAAAAATACACA</left_flank>
        <right_flank>TTTAGTTTAAAAATCAAGTTTCTAGCGTATCTAGAAGCCGAGATATATCC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTACTGTACTCTCCGCTTTGCTATCCTCCGTTTTCTCCTTCTATGCCACGCTTCCTCTTTAACAGCTCCTATGGACCCAATTCGCGTAGCGTAGTTAATTTTGTCTTGTACCATTTGATAGATCTCTTCATTTTCTACAGTATCCCTCTTACTAAACAAAACAATGTTGATCTCGAAAAGAGTTATGGGCCCGCAAACTTTGTTATTTTTTTGTTCCCCAAATTTTATATTCCAACTTTTTCCAGATCGAAAAAATGCGCCGCCACATTCTATTCACTTCCTTACTACCAATTTTAGCTAGTTCTCTTCTTAGTTCAGATTTGACGTCGAACCATCAAGGAGCCACGGGAACAGTAGGTGAGTAAAAACCAATAAATTCGTCAAAAAACTACCAAGATGGTCCAAAATTCATCGGAAATTCGCGTTTTTTTTTGAATTTTTGAGATAATTGAAAATTTGAAAGTATTTTTGTTTTAAAAACGCATTTAAAAATACACAATTTAGTTTAAAAATCAAGTTTCTAGCGTATCTAGAAGCCGAGATATATCCATTTGAAGTTGTGAGGCGAGAGACGCAGACAACGAGAGCACACTAACTGTCTGCGTCTCTTCAAAACTACAAACGGCTATATCTCGGCTTCCAGAAGTCCTGGAAAGTTGATTTTCTGACAGTTTTTTATTTTAAATTTCTTCGAAATTTTATATTTTATAAAAATTCAGAAAAATTCGGTTTTCGAAAATTTTCAAATCGTATAATTCCAATATTGTATAATATGAAGCATCAAAATTGACGTATTTCGGTCCAAAAATCAAGTTTCTAGCTCATCTGGGAGCTGAGATATAGCGATTTGAAGTTTTGAAGCGAGAGACGCAGACAACGAGAACAATCTAACCGTCTGCGTCTCTCCAAAATTTTGAGAGGCTATATCTCGGCTCCGAGATGAGCTAGAAAGTTGGTTTTTTGACAGTTTTTGAAGATTTCAAATGTCACTAAATTGTA</canonical>
            <polymorphic>CTTACTGTACTCTCCGCTTTGCTATCCTCCGTTTTCTCCTTCTATGCCACGCTTCCTCTTTAACAGCTCCTATGGACCCAATTCGCGTAGCGTAGTTAATTTTGTCTTGTACCATTTGATAGATCTCTTCATTTTCTACAGTATCCCTCTTACTAAACAAAACAATGTTGATCTCGAAAAGAGTTATGGGCCCGCAAACTTTGTTATTTTTTTGTTCCCCAAATTTTATATTCCAACTTTTTCCAGATCGAAAAAATGCGCCGCCACATTCTATTCACTTCCTTACTACCAATTTTAGCTAGTTCTCTTCTTAGTTCAGATTTGACGTCGAACCATCAAGGAGCCACGGGAACAGTAGGTGAGTAAAAACCAATAAATTCGTCAAAAAACTACCAAGATGGTCCAAAATTCATCGGAAATTCGCGTTTTTTTTTGAATTTTTGAGATAATTGAAAATTTGAAAGTATTTTTGTTTTAAAAACGCATTTAAAAATACACAWTTTAGTTTAAAAATCAAGTTTCTAGCGTATCTAGAAGCCGAGATATATCCATTTGAAGTTGTGAGGCGAGAGACGCAGACAACGAGAGCACACTAACTGTCTGCGTCTCTTCAAAACTACAAACGGCTATATCTCGGCTTCCAGAAGTCCTGGAAAGTTGATTTTCTGACAGTTTTTTATTTTAAATTTCTTCGAAATTTTATATTTTATAAAAATTCAGAAAAATTCGGTTTTCGAAAATTTTCAAATCGTATAATTCCAATATTGTATAATATGAAGCATCAAAATTGACGTATTTCGGTCCAAAAATCAAGTTTCTAGCTCATCTGGGAGCTGAGATATAGCGATTTGAAGTTTTGAAGCGAGAGACGCAGACAACGAGAACAATCTAACCGTCTGCGTCTCTCCAAAATTTTGAGAGGCTATATCTCGGCTCCGAGATGAGCTAGAAAGTTGGTTTTTTGACAGTTTTTGAAGATTTCAAATGTCACTAAATTGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>186 125 124 85 83 79 69 44 31 31 18 18 18 16 15 12 11 11 10 7 7</canonical_bands>
                <polymorphic_bands>230 125 124 85 83 79 69 31 31 18 18 18 16 15 12 11 11 10 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGATGGTCCAAAATTCAT</pcr_primer_p1>
		<pcr_primer_p2>CAATATTGGAATTATACGATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>374</pcr_amplicon_size>
		<canonical_amplicon>CAAGATGGTCCAAAATTCATCGGAAATTCGCGTTTTTTTTTGAATTTTTGAGATAATTGAAAATTTGAAAGTATTTTTGTTTTAAAAACGCATTTAAAAATACACAATTTAGTTTAAAAATCAAGTTTCTAGCGTATCTAGAAGCCGAGATATATCCATTTGAAGTTGTGAGGCGAGAGACGCAGACAACGAGAGCACACTAACTGTCTGCGTCTCTTCAAAACTACAAACGGCTATATCTCGGCTTCCAGAAGTCCTGGAAAGTTGATTTTCTGACAGTTTTTTATTTTAAATTTCTTCGAAATTTTATATTTTATAAAAATTCAGAAAAATTCGGTTTTCGAAAATTTTCAAATCGTATAATTCCAATATTG</canonical_amplicon>
		<polymorphic_amplicon>CAAGATGGTCCAAAATTCATCGGAAATTCGCGTTTTTTTTTGAATTTTTGAGATAATTGAAAATTTGAAAGTATTTTTGTTTTAAAAACGCATTTAAAAATACACAWTTTAGTTTAAAAATCAAGTTTCTAGCGTATCTAGAAGCCGAGATATATCCATTTGAAGTTGTGAGGCGAGAGACGCAGACAACGAGAGCACACTAACTGTCTGCGTCTCTTCAAAACTACAAACGGCTATATCTCGGCTTCCAGAAGTCCTGGAAAGTTGATTTTCTGACAGTTTTTTATTTTAAATTTCTTCGAAATTTTATATTTTATAAAAATTCAGAAAAATTCGGTTTTCGAAAATTTTCAAATCGTATAATTCCAATATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28939</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>36875</contig_pos>
        <strand></strand>
        <context>acawtttagt[T/C]taaaaatcaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTGAAAGTATTTTTGTTTTAAAAACGCATTTAAAAATACACAATTTAGT</left_flank>
        <right_flank>TAAAAATCAAGTTTCTAGCGTATCTAGAAGCCGAGATATATCCATTTGAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTCTCCGCTTTGCTATCCTCCGTTTTCTCCTTCTATGCCACGCTTCCTCTTTAACAGCTCCTATGGACCCAATTCGCGTAGCGTAGTTAATTTTGTCTTGTACCATTTGATAGATCTCTTCATTTTCTACAGTATCCCTCTTACTAAACAAAACAATGTTGATCTCGAAAAGAGTTATGGGCCCGCAAACTTTGTTATTTTTTTGTTCCCCAAATTTTATATTCCAACTTTTTCCAGATCGAAAAAATGCGCCGCCACATTCTATTCACTTCCTTACTACCAATTTTAGCTAGTTCTCTTCTTAGTTCAGATTTGACGTCGAACCATCAAGGAGCCACGGGAACAGTAGGTGAGTAAAAACCAATAAATTCGTCAAAAAACTACCAAGATGGTCCAAAATTCATCGGAAATTCGCGTTTTTTTTTGAATTTTTGAGATAATTGAAAATTTGAAAGTATTTTTGTTTTAAAAACGCATTTAAAAATACACAATTTAGTTTAAAAATCAAGTTTCTAGCGTATCTAGAAGCCGAGATATATCCATTTGAAGTTGTGAGGCGAGAGACGCAGACAACGAGAGCACACTAACTGTCTGCGTCTCTTCAAAACTACAAACGGCTATATCTCGGCTTCCAGAAGTCCTGGAAAGTTGATTTTCTGACAGTTTTTTATTTTAAATTTCTTCGAAATTTTATATTTTATAAAAATTCAGAAAAATTCGGTTTTCGAAAATTTTCAAATCGTATAATTCCAATATTGTATAATATGAAGCATCAAAATTGACGTATTTCGGTCCAAAAATCAAGTTTCTAGCTCATCTGGGAGCTGAGATATAGCGATTTGAAGTTTTGAAGCGAGAGACGCAGACAACGAGAACAATCTAACCGTCTGCGTCTCTCCAAAATTTTGAGAGGCTATATCTCGGCTCCGAGATGAGCTAGAAAGTTGGTTTTTTGACAGTTTTTGAAGATTTCAAATGTCACTAAATTGTATAATAAT</canonical>
            <polymorphic>TACTCTCCGCTTTGCTATCCTCCGTTTTCTCCTTCTATGCCACGCTTCCTCTTTAACAGCTCCTATGGACCCAATTCGCGTAGCGTAGTTAATTTTGTCTTGTACCATTTGATAGATCTCTTCATTTTCTACAGTATCCCTCTTACTAAACAAAACAATGTTGATCTCGAAAAGAGTTATGGGCCCGCAAACTTTGTTATTTTTTTGTTCCCCAAATTTTATATTCCAACTTTTTCCAGATCGAAAAAATGCGCCGCCACATTCTATTCACTTCCTTACTACCAATTTTAGCTAGTTCTCTTCTTAGTTCAGATTTGACGTCGAACCATCAAGGAGCCACGGGAACAGTAGGTGAGTAAAAACCAATAAATTCGTCAAAAAACTACCAAGATGGTCCAAAATTCATCGGAAATTCGCGTTTTTTTTTGAATTTTTGAGATAATTGAAAATTTGAAAGTATTTTTGTTTTAAAAACGCATTTAAAAATACACAATTTAGTYTAAAAATCAAGTTTCTAGCGTATCTAGAAGCCGAGATATATCCATTTGAAGTTGTGAGGCGAGAGACGCAGACAACGAGAGCACACTAACTGTCTGCGTCTCTTCAAAACTACAAACGGCTATATCTCGGCTTCCAGAAGTCCTGGAAAGTTGATTTTCTGACAGTTTTTTATTTTAAATTTCTTCGAAATTTTATATTTTATAAAAATTCAGAAAAATTCGGTTTTCGAAAATTTTCAAATCGTATAATTCCAATATTGTATAATATGAAGCATCAAAATTGACGTATTTCGGTCCAAAAATCAAGTTTCTAGCTCATCTGGGAGCTGAGATATAGCGATTTGAAGTTTTGAAGCGAGAGACGCAGACAACGAGAACAATCTAACCGTCTGCGTCTCTCCAAAATTTTGAGAGGCTATATCTCGGCTCCGAGATGAGCTAGAAAGTTGGTTTTTTGACAGTTTTTGAAGATTTCAAATGTCACTAAATTGTATAATAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>469 324 175 20 12</canonical_bands>
                <polymorphic_bands>469 324 195 12</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>379 325 175 53 36 20 12</canonical_bands>
                <polymorphic_bands>379 325 195 53 36 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGATGGTCCAAAATTCAT</pcr_primer_p1>
		<pcr_primer_p2>CAATATTGGAATTATACGATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>374</pcr_amplicon_size>
		<canonical_amplicon>CAAGATGGTCCAAAATTCATCGGAAATTCGCGTTTTTTTTTGAATTTTTGAGATAATTGAAAATTTGAAAGTATTTTTGTTTTAAAAACGCATTTAAAAATACACAATTTAGTTTAAAAATCAAGTTTCTAGCGTATCTAGAAGCCGAGATATATCCATTTGAAGTTGTGAGGCGAGAGACGCAGACAACGAGAGCACACTAACTGTCTGCGTCTCTTCAAAACTACAAACGGCTATATCTCGGCTTCCAGAAGTCCTGGAAAGTTGATTTTCTGACAGTTTTTTATTTTAAATTTCTTCGAAATTTTATATTTTATAAAAATTCAGAAAAATTCGGTTTTCGAAAATTTTCAAATCGTATAATTCCAATATTG</canonical_amplicon>
		<polymorphic_amplicon>CAAGATGGTCCAAAATTCATCGGAAATTCGCGTTTTTTTTTGAATTTTTGAGATAATTGAAAATTTGAAAGTATTTTTGTTTTAAAAACGCATTTAAAAATACACAATTTAGTYTAAAAATCAAGTTTCTAGCGTATCTAGAAGCCGAGATATATCCATTTGAAGTTGTGAGGCGAGAGACGCAGACAACGAGAGCACACTAACTGTCTGCGTCTCTTCAAAACTACAAACGGCTATATCTCGGCTTCCAGAAGTCCTGGAAAGTTGATTTTCTGACAGTTTTTTATTTTAAATTTCTTCGAAATTTTATATTTTATAAAAATTCAGAAAAATTCGGTTTTCGAAAATTTTCAAATCGTATAATTCCAATATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28940</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>55658</contig_pos>
        <strand>+</strand>
        <context>AAATTATTGA[C/T]TTTCTTGGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGATTTGAACTCTATTTTTTTTTTTTGAGAATTTTTCAATAAATTATTGA</left_flank>
        <right_flank>TTTCTTGGATTGCTCATCCTTAATTTCTAGGCTCACGACGACAACGGAGA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCTGCTGATGGGTTGTTGGGTGAGTTTTTGGCTGGTTTCGACCCGATTTTTGAGGACTTTTAGGCCTTTTTCGAGTCGGAAATGCTATTTTCAGACCTATTTTGGCTCCAAAAAGTCATATTTAGCCGTGTTTTTATCCCCAGAAACCTTGATTTTTAGGTCAATTTTAAGCCAAAAATGAGGATTTTTAGGATTATTTTAAACAAAAAATTGGAGGATTTTTGGCTTATTTAGACCGGAAAATTGAGTGCTTTTTGGCCCATTTTCACTCTAAAAATGACATTTTTGGGCTTATTTTTACCAGGAAAATGATATTTTTAGGCCTATTTTAGCTGCCCAAAAATAGCATTTCCAGACGTTTTTGGACCCCAAAAATGTCATTTTCAGCCAAAAAAGTTTCAGATCCCCGACTGATTTTTGGCGATCAAGACAGCCCTAAAAAACAGGAGATTTGAACTCTATTTTTTTTTTTTGAGAATTTTTCAATAAATTATTGACTTTCTTGGATTGCTCATCCTTAATTTCTAGGCTCACGACGACAACGGAGAACTCCGGCGGCGACGACGGAGACGCAGATTCAGAATATTGAGAGTGGGCCGTTGAGAACGGAAGTTGATGATGATGTGAGTGGTGTTTTTTTTGTTTTGTTTGTTAGCTGAAAATGAGCAATTTTCAGTCGGAAAATGCGCGAATTTTTGAGCTAAAAATAGGCTGAAAATGGCTGAAAATAGGCTTAAAACGACTGAAAATTGGCTAAAAATGGGCTGAAATTGACTGAAAAACGCGCCAAAGGCACGCCAGCCTCCTAGAAATGAGAAAATAGGCTAAAAGTGACTGAGAATTGACTGAAATTAGACTAAAAATGGGCTGAAAATGACTAAAAGTAGGCTAAAATGAACTGAAAATGACCGAAAATAAGCCTAAAATGGTCGAAAATGCCCGATCTGGCCTACAATAGTACGAATCTTGGCTGAAAATGACCAAAATTAAGTCTAAAA</canonical>
            <polymorphic>TGGCTGCTGATGGGTTGTTGGGTGAGTTTTTGGCTGGTTTCGACCCGATTTTTGAGGACTTTTAGGCCTTTTTCGAGTCGGAAATGCTATTTTCAGACCTATTTTGGCTCCAAAAAGTCATATTTAGCCGTGTTTTTATCCCCAGAAACCTTGATTTTTAGGTCAATTTTAAGCCAAAAATGAGGATTTTTAGGATTATTTTAAACAAAAAATTGGAGGATTTTTGGCTTATTTAGACCGGAAAATTGAGTGCTTTTTGGCCCATTTTCACTCTAAAAATGACATTTTTGGGCTTATTTTTACCAGGAAAATGATATTTTTAGGCCTATTTTAGCTGCCCAAAAATAGCATTTCCAGACGTTTTTGGACCCCAAAAATGTCATTTTCAGCCAAAAAAGTTTCAGATCCCCGACTGATTTTTGGCGATCAAGACAGCCCTAAAAAACAGGAGATTTGAACTCTATTTTTTTTTTTTGAGAATTTTTCAATAAATTATTGAYTTTCTTGGATTGCTCATCCTTAATTTCTAGGCTCACGACGACAACGGAGAACTCCGGCGGCGACGACGGAGACGCAGATTCAGAATATTGAGAGTGGGCCGTTGAGAACGGAAGTTGATGATGATGTGAGTGGTGTTTTTTTTGTTTTGTTTGTTAGCTGAAAATGAGCAATTTTCAGTCGGAAAATGCGCGAATTTTTGAGCTAAAAATAGGCTGAAAATGGCTGAAAATAGGCTTAAAACGACTGAAAATTGGCTAAAAATGGGCTGAAATTGACTGAAAAACGCGCCAAAGGCACGCCAGCCTCCTAGAAATGAGAAAATAGGCTAAAAGTGACTGAGAATTGACTGAAATTAGACTAAAAATGGGCTGAAAATGACTAAAAGTAGGCTAAAATGAACTGAAAATGACCGAAAATAAGCCTAAAATGGTCGAAAATGCCCGATCTGGCCTACAATAGTACGAATCTTGGCTGAAAATGACCAAAATTAAGTCTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCAAGACAGCCCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAATTGCTCATTTTCAGCTAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCAAGACAGCCCTAAAAAACAGGAGATTTGAACTCTATTTTTTTTTTTTGAGAATTTTTCAATAAATTATTGACTTTCTTGGATTGCTCATCCTTAATTTCTAGGCTCACGACGACAACGGAGAACTCCGGCGGCGACGACGGAGACGCAGATTCAGAATATTGAGAGTGGGCCGTTGAGAACGGAAGTTGATGATGATGTGAGTGGTGTTTTTTTTGTTTTGTTTGTTAGCTGAAAATGAGCAATTT</canonical_amplicon>
		<polymorphic_amplicon>GATCAAGACAGCCCTAAAAAACAGGAGATTTGAACTCTATTTTTTTTTTTTGAGAATTTTTCAATAAATTATTGAYTTTCTTGGATTGCTCATCCTTAATTTCTAGGCTCACGACGACAACGGAGAACTCCGGCGGCGACGACGGAGACGCAGATTCAGAATATTGAGAGTGGGCCGTTGAGAACGGAAGTTGATGATGATGTGAGTGGTGTTTTTTTTGTTTTGTTTGTTAGCTGAAAATGAGCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28941</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>55794</contig_pos>
        <strand>+</strand>
        <context>GTGAGTGGTG[G/T]TTTTTTTGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATTGAGAGTGGGCCGTTGAGAACGGAAGTTGATGATGATGTGAGTGGTG</left_flank>
        <right_flank>TTTTTTTGTTTTGTTTGTTAGCTGAAAATGAGCAATTTTCAGTCGGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCCCCAGAAACCTTGATTTTTAGGTCAATTTTAAGCCAAAAATGAGGATTTTTAGGATTATTTTAAACAAAAAATTGGAGGATTTTTGGCTTATTTAGACCGGAAAATTGAGTGCTTTTTGGCCCATTTTCACTCTAAAAATGACATTTTTGGGCTTATTTTTACCAGGAAAATGATATTTTTAGGCCTATTTTAGCTGCCCAAAAATAGCATTTCCAGACGTTTTTGGACCCCAAAAATGTCATTTTCAGCCAAAAAAGTTTCAGATCCCCGACTGATTTTTGGCGATCAAGACAGCCCTAAAAAACAGGAGATTTGAACTCTATTTTTTTTTTTTGAGAATTTTTCAATAAATTATTGACTTTCTTGGATTGCTCATCCTTAATTTCTAGGCTCACGACGACAACGGAGAACTCCGGCGGCGACGACGGAGACGCAGATTCAGAATATTGAGAGTGGGCCGTTGAGAACGGAAGTTGATGATGATGTGAGTGGTGTTTTTTTTGTTTTGTTTGTTAGCTGAAAATGAGCAATTTTCAGTCGGAAAATGCGCGAATTTTTGAGCTAAAAATAGGCTGAAAATGGCTGAAAATAGGCTTAAAACGACTGAAAATTGGCTAAAAATGGGCTGAAATTGACTGAAAAACGCGCCAAAGGCACGCCAGCCTCCTAGAAATGAGAAAATAGGCTAAAAGTGACTGAGAATTGACTGAAATTAGACTAAAAATGGGCTGAAAATGACTAAAAGTAGGCTAAAATGAACTGAAAATGACCGAAAATAAGCCTAAAATGGTCGAAAATGCCCGATCTGGCCTACAATAGTACGAATCTTGGCTGAAAATGACCAAAATTAAGTCTAAAAATTTACCCAAAAATAGGCTTAAAATGATCAAAACACACCGAAAATCGGTCCTAAAATGCTCGAAATAGGCTAAAATGCTAAAAAAAACACGATTTTCCAAAAATTGCTAGGATGGCCTAGTGGGATTTTTGAGGAA</canonical>
            <polymorphic>TATCCCCAGAAACCTTGATTTTTAGGTCAATTTTAAGCCAAAAATGAGGATTTTTAGGATTATTTTAAACAAAAAATTGGAGGATTTTTGGCTTATTTAGACCGGAAAATTGAGTGCTTTTTGGCCCATTTTCACTCTAAAAATGACATTTTTGGGCTTATTTTTACCAGGAAAATGATATTTTTAGGCCTATTTTAGCTGCCCAAAAATAGCATTTCCAGACGTTTTTGGACCCCAAAAATGTCATTTTCAGCCAAAAAAGTTTCAGATCCCCGACTGATTTTTGGCGATCAAGACAGCCCTAAAAAACAGGAGATTTGAACTCTATTTTTTTTTTTTGAGAATTTTTCAATAAATTATTGACTTTCTTGGATTGCTCATCCTTAATTTCTAGGCTCACGACGACAACGGAGAACTCCGGCGGCGACGACGGAGACGCAGATTCAGAATATTGAGAGTGGGCCGTTGAGAACGGAAGTTGATGATGATGTGAGTGGTGKTTTTTTTGTTTTGTTTGTTAGCTGAAAATGAGCAATTTTCAGTCGGAAAATGCGCGAATTTTTGAGCTAAAAATAGGCTGAAAATGGCTGAAAATAGGCTTAAAACGACTGAAAATTGGCTAAAAATGGGCTGAAATTGACTGAAAAACGCGCCAAAGGCACGCCAGCCTCCTAGAAATGAGAAAATAGGCTAAAAGTGACTGAGAATTGACTGAAATTAGACTAAAAATGGGCTGAAAATGACTAAAAGTAGGCTAAAATGAACTGAAAATGACCGAAAATAAGCCTAAAATGGTCGAAAATGCCCGATCTGGCCTACAATAGTACGAATCTTGGCTGAAAATGACCAAAATTAAGTCTAAAAATTTACCCAAAAATAGGCTTAAAATGATCAAAACACACCGAAAATCGGTCCTAAAATGCTCGAAATAGGCTAAAATGCTAAAAAAAACACGATTTTCCAAAAATTGCTAGGATGGCCTAGTGGGATTTTTGAGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGATTCAGAATATTGAGAGTGG</pcr_primer_p1>
		<pcr_primer_p2>TTTCGAATTTCTTCATATTTAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>743</pcr_amplicon_size>
		<canonical_amplicon>CAGATTCAGAATATTGAGAGTGGGCCGTTGAGAACGGAAGTTGATGATGATGTGAGTGGTGTTTTTTTTGTTTTGTTTGTTAGCTG</canonical_amplicon>
		<polymorphic_amplicon>CAGATTCAGAATATTGAGAGTGGGCCGTTGAGAACGGAAGTTGATGATGATGTGAGTGGTGKTTTTTTTGTTTTGTTTGTTAGCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28942</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>61309</contig_pos>
        <strand></strand>
        <context>GTCTTCAAAC[C/T]CCTATGGTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCACTGAATTTTCGATTTTCCGATTTTTCAATTTGTCATGTCTTCAAAC</left_flank>
        <right_flank>CCTATGGTCCAAAATTCAAGTCCCTAGCACTTCTCGGAGCTGAGATGTGA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCCCGCTTTTCGAAGGATTTAGGCGTGTTTGAGCTCATTTTTCGAGTATTTCAGAGTTTTTTGTGCGATTTTTGGCGCCAAATTTGAGTATTTCTGAGATTTTTAGATTTTCAGAATCCTCCGAAATTCCAAAATTTCAAAAAATTCCAATTTTTTACAGCGCACAAAAATCAAGAACATCCCGCGGATCACGATCGGCGCCTACACGATAAACTCGTGGTACTACTCGCCGTTCCCCAAATTTTGTGAGAATCACGAGATCTTCATGTGCGAGTACTGTCTGGCCTATACACCACACAAATCCCGGGCAAAATCGCATTTACAGGTAAGAAATGGGGGAAAAATCATGCTGAAATTTGAAAATTTGAAGCTCCTAGCGTTTTTATGAGCCGAGATATGGCGTATTTGAAGTGGTGGCCGAGTTTTTGAGATTTTTAGATTCCTAGGCCACTGAATTTTCGATTTTCCGATTTTTCAATTTGTCATGTCTTCAAACCCCTATGGTCCAAAATTCAAGTCCCTAGCACTTCTCGGAGCTGAGATGTGAAGGTGGCCGAGTTTTGGTTTTCTAGGCCACCAAACTCAAAAAGCTATAACTCGACTCCTAGAAGTCATATCTTCATGAAACTTGAACCATAGCTTCTTTCAAACTTGCTCTACAGAACGATTATAGAATTCATGGCCTAGAATTCGTAGATTTGGATTTCTAGGCCACCATGTTTAAATAGACATATCTCGCCTTCTAATCATCCGAGAAATTTGATTTCTGATCTTTCGGTTTCTCACATTTAACATTCTTTGTATTCAAAATTTCAAGATTCCAGCAGTTATAAGGGCTGAGATATGGCGTATGTGAAGTGGTGGCCTAGTTTCTGAGATTTTGAGATTCCTAGGCCACTGAATTTTTCGATTTTCAGATTTTTAAATTTGTCATGTCTCCAAACCCCTATGGTCCAAAGTTCAAGTCTCTAGCACTTCTCGGAGCTGAGATACGCTT</canonical>
            <polymorphic>AAATCCCGCTTTTCGAAGGATTTAGGCGTGTTTGAGCTCATTTTTCGAGTATTTCAGAGTTTTTTGTGCGATTTTTGGCGCCAAATTTGAGTATTTCTGAGATTTTTAGATTTTCAGAATCCTCCGAAATTCCAAAATTTCAAAAAATTCCAATTTTTTACAGCGCACAAAAATCAAGAACATCCCGCGGATCACGATCGGCGCCTACACGATAAACTCGTGGTACTACTCGCCGTTCCCCAAATTTTGTGAGAATCACGAGATCTTCATGTGCGAGTACTGTCTGGCCTATACACCACACAAATCCCGGGCAAAATCGCATTTACAGGTAAGAAATGGGGGAAAAATCATGCTGAAATTTGAAAATTTGAAGCTCCTAGCGTTTTTATGAGCCGAGATATGGCGTATTTGAAGTGGTGGCCGAGTTTTTGAGATTTTTAGATTCCTAGGCCACTGAATTTTCGATTTTCCGATTTTTCAATTTGTCATGTCTTCAAACYCCTATGGTCCAAAATTCAAGTCCCTAGCACTTCTCGGAGCTGAGATGTGAAGGTGGCCGAGTTTTGGTTTTCTAGGCCACCAAACTCAAAAAGCTATAACTCGACTCCTAGAAGTCATATCTTCATGAAACTTGAACCATAGCTTCTTTCAAACTTGCTCTACAGAACGATTATAGAATTCATGGCCTAGAATTCGTAGATTTGGATTTCTAGGCCACCATGTTTAAATAGACATATCTCGCCTTCTAATCATCCGAGAAATTTGATTTCTGATCTTTCGGTTTCTCACATTTAACATTCTTTGTATTCAAAATTTCAAGATTCCAGCAGTTATAAGGGCTGAGATATGGCGTATGTGAAGTGGTGGCCTAGTTTCTGAGATTTTGAGATTCCTAGGCCACTGAATTTTTCGATTTTCAGATTTTTAAATTTGTCATGTCTCCAAACCCCTATGGTCCAAAGTTCAAGTCTCTAGCACTTCTCGGAGCTGAGATACGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCTAGGCCACTGAATTT</pcr_primer_p1>
		<pcr_primer_p2>GAGAAACCGAAAGATCAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>346</pcr_amplicon_size>
		<canonical_amplicon>ATTCCTAGGCCACTGAATTTTCGATTTTCCGATTTTTCAATTTGTCATGTCTTCAAACCCCTATGGTCCAAAATTCAAGTCCCTAGCACTTCTCGGAGCTGAGATGTGAAGGTGGCCGAGTTTTGGTTTTCTAGGCCACCAAACTCAAAAAGCTATAACTCGACTCCTAGAAGTCATATCTTCATGAAACTTGAACCATAGCTTCTTTCAAACTTGCTCTACAGAACGATTATAGAATTCATGGCCTAGAATTCGTAGATTTGGATTTCTAGGCCACCATGTTTAAATAGACATATCTCGCCTTCTAATCATCCGAGAAATTTGATTTCTGATCTTTCGGTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>ATTCCTAGGCCACTGAATTTTCGATTTTCCGATTTTTCAATTTGTCATGTCTTCAAACYCCTATGGTCCAAAATTCAAGTCCCTAGCACTTCTCGGAGCTGAGATGTGAAGGTGGCCGAGTTTTGGTTTTCTAGGCCACCAAACTCAAAAAGCTATAACTCGACTCCTAGAAGTCATATCTTCATGAAACTTGAACCATAGCTTCTTTCAAACTTGCTCTACAGAACGATTATAGAATTCATGGCCTAGAATTCGTAGATTTGGATTTCTAGGCCACCATGTTTAAATAGACATATCTCGCCTTCTAATCATCCGAGAAATTTGATTTCTGATCTTTCGGTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28943</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>61332</contig_pos>
        <strand></strand>
        <context>AATTCAAGTC[C/T]CTAGCACTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTTCAATTTGTCATGTCTTCAAACCCCTATGGTCCAAAATTCAAGTC</left_flank>
        <right_flank>CTAGCACTTCTCGGAGCTGAGATGTGAAGGTGGCCGAGTTTTGGTTTTCT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGCGTGTTTGAGCTCATTTTTCGAGTATTTCAGAGTTTTTTGTGCGATTTTTGGCGCCAAATTTGAGTATTTCTGAGATTTTTAGATTTTCAGAATCCTCCGAAATTCCAAAATTTCAAAAAATTCCAATTTTTTACAGCGCACAAAAATCAAGAACATCCCGCGGATCACGATCGGCGCCTACACGATAAACTCGTGGTACTACTCGCCGTTCCCCAAATTTTGTGAGAATCACGAGATCTTCATGTGCGAGTACTGTCTGGCCTATACACCACACAAATCCCGGGCAAAATCGCATTTACAGGTAAGAAATGGGGGAAAAATCATGCTGAAATTTGAAAATTTGAAGCTCCTAGCGTTTTTATGAGCCGAGATATGGCGTATTTGAAGTGGTGGCCGAGTTTTTGAGATTTTTAGATTCCTAGGCCACTGAATTTTCGATTTTCCGATTTTTCAATTTGTCATGTCTTCAAACCCCTATGGTCCAAAATTCAAGTCCCTAGCACTTCTCGGAGCTGAGATGTGAAGGTGGCCGAGTTTTGGTTTTCTAGGCCACCAAACTCAAAAAGCTATAACTCGACTCCTAGAAGTCATATCTTCATGAAACTTGAACCATAGCTTCTTTCAAACTTGCTCTACAGAACGATTATAGAATTCATGGCCTAGAATTCGTAGATTTGGATTTCTAGGCCACCATGTTTAAATAGACATATCTCGCCTTCTAATCATCCGAGAAATTTGATTTCTGATCTTTCGGTTTCTCACATTTAACATTCTTTGTATTCAAAATTTCAAGATTCCAGCAGTTATAAGGGCTGAGATATGGCGTATGTGAAGTGGTGGCCTAGTTTCTGAGATTTTGAGATTCCTAGGCCACTGAATTTTTCGATTTTCAGATTTTTAAATTTGTCATGTCTCCAAACCCCTATGGTCCAAAGTTCAAGTCTCTAGCACTTCTCGGAGCTGAGATACGCTTGTGGCCGAGTTTTGGATTTCTAG</canonical>
            <polymorphic>AGGCGTGTTTGAGCTCATTTTTCGAGTATTTCAGAGTTTTTTGTGCGATTTTTGGCGCCAAATTTGAGTATTTCTGAGATTTTTAGATTTTCAGAATCCTCCGAAATTCCAAAATTTCAAAAAATTCCAATTTTTTACAGCGCACAAAAATCAAGAACATCCCGCGGATCACGATCGGCGCCTACACGATAAACTCGTGGTACTACTCGCCGTTCCCCAAATTTTGTGAGAATCACGAGATCTTCATGTGCGAGTACTGTCTGGCCTATACACCACACAAATCCCGGGCAAAATCGCATTTACAGGTAAGAAATGGGGGAAAAATCATGCTGAAATTTGAAAATTTGAAGCTCCTAGCGTTTTTATGAGCCGAGATATGGCGTATTTGAAGTGGTGGCCGAGTTTTTGAGATTTTTAGATTCCTAGGCCACTGAATTTTCGATTTTCCGATTTTTCAATTTGTCATGTCTTCAAACCCCTATGGTCCAAAATTCAAGTCYCTAGCACTTCTCGGAGCTGAGATGTGAAGGTGGCCGAGTTTTGGTTTTCTAGGCCACCAAACTCAAAAAGCTATAACTCGACTCCTAGAAGTCATATCTTCATGAAACTTGAACCATAGCTTCTTTCAAACTTGCTCTACAGAACGATTATAGAATTCATGGCCTAGAATTCGTAGATTTGGATTTCTAGGCCACCATGTTTAAATAGACATATCTCGCCTTCTAATCATCCGAGAAATTTGATTTCTGATCTTTCGGTTTCTCACATTTAACATTCTTTGTATTCAAAATTTCAAGATTCCAGCAGTTATAAGGGCTGAGATATGGCGTATGTGAAGTGGTGGCCTAGTTTCTGAGATTTTGAGATTCCTAGGCCACTGAATTTTTCGATTTTCAGATTTTTAAATTTGTCATGTCTCCAAACCCCTATGGTCCAAAGTTCAAGTCTCTAGCACTTCTCGGAGCTGAGATACGCTTGTGGCCGAGTTTTGGATTTCTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATTTTTCAATTTGTCATGT</pcr_primer_p1>
		<pcr_primer_p2>GAGAAACCGAAAGATCAGAA</pcr_primer_p2>
		<pcr_amplicon_size>317</pcr_amplicon_size>
		<canonical_amplicon>CGATTTTTCAATTTGTCATGTCTTCAAACCCCTATGGTCCAAAATTCAAGTCCCTAGCACTTCTCGGAGCTGAGATGTGAAGGTGGCCGAGTTTTGGTTTTCTAGGCCACCAAACTCAAAAAGCTATAACTCGACTCCTAGAAGTCATATCTTCATGAAACTTGAACCATAGCTTCTTTCAAACTTGCTCTACAGAACGATTATAGAATTCATGGCCTAGAATTCGTAGATTTGGATTTCTAGGCCACCATGTTTAAATAGACATATCTCGCCTTCTAATCATCCGAGAAATTTGATTTCTGATCTTTCGGTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>CGATTTTTCAATTTGTCATGTCTTCAAACCCCTATGGTCCAAAATTCAAGTCYCTAGCACTTCTCGGAGCTGAGATGTGAAGGTGGCCGAGTTTTGGTTTTCTAGGCCACCAAACTCAAAAAGCTATAACTCGACTCCTAGAAGTCATATCTTCATGAAACTTGAACCATAGCTTCTTTCAAACTTGCTCTACAGAACGATTATAGAATTCATGGCCTAGAATTCGTAGATTTGGATTTCTAGGCCACCATGTTTAAATAGACATATCTCGCCTTCTAATCATCCGAGAAATTTGATTTCTGATCTTTCGGTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28944</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>61451</contig_pos>
        <strand></strand>
        <context>ttgaaccata[G/A]cttctttcaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGCTATAACTCGACTCCTAGAAGTCATATCTTCATGAAACTTGAACCATA</left_flank>
        <right_flank>CTTCTTTCAAACTTGCTCTACAGAACGATTATAGAATTCATGGCCTAGAA</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATTCCAATTTTTTACAGCGCACAAAAATCAAGAACATCCCGCGGATCACGATCGGCGCCTACACGATAAACTCGTGGTACTACTCGCCGTTCCCCAAATTTTGTGAGAATCACGAGATCTTCATGTGCGAGTACTGTCTGGCCTATACACCACACAAATCCCGGGCAAAATCGCATTTACAGGTAAGAAATGGGGGAAAAATCATGCTGAAATTTGAAAATTTGAAGCTCCTAGCGTTTTTATGAGCCGAGATATGGCGTATTTGAAGTGGTGGCCGAGTTTTTGAGATTTTTAGATTCCTAGGCCACTGAATTTTCGATTTTCCGATTTTTCAATTTGTCATGTCTTCAAACCCCTATGGTCCAAAATTCAAGTCCCTAGCACTTCTCGGAGCTGAGATGTGAAGGTGGCCGAGTTTTGGTTTTCTAGGCCACCAAACTCAAAAAGCTATAACTCGACTCCTAGAAGTCATATCTTCATGAAACTTGAACCATAGCTTCTTTCAAACTTGCTCTACAGAACGATTATAGAATTCATGGCCTAGAATTCGTAGATTTGGATTTCTAGGCCACCATGTTTAAATAGACATATCTCGCCTTCTAATCATCCGAGAAATTTGATTTCTGATCTTTCGGTTTCTCACATTTAACATTCTTTGTATTCAAAATTTCAAGATTCCAGCAGTTATAAGGGCTGAGATATGGCGTATGTGAAGTGGTGGCCTAGTTTCTGAGATTTTGAGATTCCTAGGCCACTGAATTTTTCGATTTTCAGATTTTTAAATTTGTCATGTCTCCAAACCCCTATGGTCCAAAGTTCAAGTCTCTAGCACTTCTCGGAGCTGAGATACGCTTGTGGCCGAGTTTTGGATTTCTAGGCCACCATGTTCACTGAGCTATAACTCGACTCCAATTAGTCCTAGAATGTTCTTATTTGAACCATAGGCTTGATGAAGACTTGCTCTAAAAATGCTTAAAATTTGGTGGCCTAGAAACT</canonical>
            <polymorphic>AAAAATTCCAATTTTTTACAGCGCACAAAAATCAAGAACATCCCGCGGATCACGATCGGCGCCTACACGATAAACTCGTGGTACTACTCGCCGTTCCCCAAATTTTGTGAGAATCACGAGATCTTCATGTGCGAGTACTGTCTGGCCTATACACCACACAAATCCCGGGCAAAATCGCATTTACAGGTAAGAAATGGGGGAAAAATCATGCTGAAATTTGAAAATTTGAAGCTCCTAGCGTTTTTATGAGCCGAGATATGGCGTATTTGAAGTGGTGGCCGAGTTTTTGAGATTTTTAGATTCCTAGGCCACTGAATTTTCGATTTTCCGATTTTTCAATTTGTCATGTCTTCAAACCCCTATGGTCCAAAATTCAAGTCCCTAGCACTTCTCGGAGCTGAGATGTGAAGGTGGCCGAGTTTTGGTTTTCTAGGCCACCAAACTCAAAAAGCTATAACTCGACTCCTAGAAGTCATATCTTCATGAAACTTGAACCATARCTTCTTTCAAACTTGCTCTACAGAACGATTATAGAATTCATGGCCTAGAATTCGTAGATTTGGATTTCTAGGCCACCATGTTTAAATAGACATATCTCGCCTTCTAATCATCCGAGAAATTTGATTTCTGATCTTTCGGTTTCTCACATTTAACATTCTTTGTATTCAAAATTTCAAGATTCCAGCAGTTATAAGGGCTGAGATATGGCGTATGTGAAGTGGTGGCCTAGTTTCTGAGATTTTGAGATTCCTAGGCCACTGAATTTTTCGATTTTCAGATTTTTAAATTTGTCATGTCTCCAAACCCCTATGGTCCAAAGTTCAAGTCTCTAGCACTTCTCGGAGCTGAGATACGCTTGTGGCCGAGTTTTGGATTTCTAGGCCACCATGTTCACTGAGCTATAACTCGACTCCAATTAGTCCTAGAATGTTCTTATTTGAACCATAGGCTTGATGAAGACTTGCTCTAAAAATGCTTAAAATTTGGTGGCCTAGAAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>345 231 166 101 54 54 49</canonical_bands>
                <polymorphic_bands>394 231 166 101 54 54</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>145 125 90 89 86 50 49 43 41 30 30 29 28 28 20 20 19 17 17 17 17 10</canonical_bands>
                <polymorphic_bands>145 125 92 90 89 86 50 41 30 30 29 28 28 20 20 19 17 17 17 17 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTATGGTCCAAAATTCAAGT</pcr_primer_p1>
		<pcr_primer_p2>GAGAAACCGAAAGATCAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>CCTATGGTCCAAAATTCAAGTCCCTAGCACTTCTCGGAGCTGAGATGTGAAGGTGGCCGAGTTTTGGTTTTCTAGGCCACCAAACTCAAAAAGCTATAACTCGACTCCTAGAAGTCATATCTTCATGAAACTTGAACCATAGCTTCTTTCAAACTTGCTCTACAGAACGATTATAGAATTCATGGCCTAGAATTCGTAGATTTGGATTTCTAGGCCACCATGTTTAAATAGACATATCTCGCCTTCTAATCATCCGAGAAATTTGATTTCTGATCTTTCGGTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>CCTATGGTCCAAAATTCAAGTCCCTAGCACTTCTCGGAGCTGAGATGTGAAGGTGGCCGAGTTTTGGTTTTCTAGGCCACCAAACTCAAAAAGCTATAACTCGACTCCTAGAAGTCATATCTTCATGAAACTTGAACCATARCTTCTTTCAAACTTGCTCTACAGAACGATTATAGAATTCATGGCCTAGAATTCGTAGATTTGGATTTCTAGGCCACCATGTTTAAATAGACATATCTCGCCTTCTAATCATCCGAGAAATTTGATTTCTGATCTTTCGGTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28945</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>86208</contig_pos>
        <strand></strand>
        <context>tttaggaaaa[G/T]tgctagaaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTTTTCGTCCGAAATCCCACTAGGCCATCCGAGCACTTTTTAGGAAAA</left_flank>
        <right_flank>TGCTAGAAAAATGACTCTAGGATCGAAAATTGGGTTTTCAGAGGGTTTCT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGGGTCGGAAATTCGAGTCAATTTTTTGTTTATACCAAAAAATGGGTCCATTTTTCCCACCCTAAGGCAGAGTTTCTGCTCTTTCCCTCCCCCGGAAAAAATAAGCCATCAGTGTCTGGCCACTCTCTCCATTCCCCACACTATTTCCAGGGGCAAAGTGTTAATCTGTTCGACCGTCAGGATTAGGGAAAAAGAAGAAGAAGAAGAAGAAATTCTGATGCTAGTTTTTGCCCCCGTGTGTCGAGTGGTGGCAACCTCTGTTGCTTTTAGTTTACTTTTTTCTAAACATTGGTTTTTGGAGCAAAAACATCCAATTTTCACCATTCAAACAAAACTTTCAGAATTTCTAACCGCGATTTTTGAATTTCCCGCCCCGGAAACCCCCAAAAAACATTTTTAAAAAAGAATTTGCCGCCGGTGGGATTCGAACCCGCGACCTCTAGATCCAAATTTTTCGTCCGAAATCCCACTAGGCCATCCGAGCACTTTTTAGGAAAAGTGCTAGAAAAATGACTCTAGGATCGAAAATTGGGTTTTCAGAGGGTTTCTGAGTGTGAAATTGTGTGAAAATAGCGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAAGGCTAAAGTGGGTGTTTTTAGAGGAAATTGCGCCAATTTTGAGACCATTTTCATTAATTGATGATTTCAGGAGCATATTATAGGTTTCCATGCATGCC</canonical>
            <polymorphic>CTGGGTCGGAAATTCGAGTCAATTTTTTGTTTATACCAAAAAATGGGTCCATTTTTCCCACCCTAAGGCAGAGTTTCTGCTCTTTCCCTCCCCCGGAAAAAATAAGCCATCAGTGTCTGGCCACTCTCTCCATTCCCCACACTATTTCCAGGGGCAAAGTGTTAATCTGTTCGACCGTCAGGATTAGGGAAAAAGAAGAAGAAGAAGAAGAAATTCTGATGCTAGTTTTTGCCCCCGTGTGTCGAGTGGTGGCAACCTCTGTTGCTTTTAGTTTACTTTTTTCTAAACATTGGTTTTTGGAGCAAAAACATCCAATTTTCACCATTCAAACAAAACTTTCAGAATTTCTAACCGCGATTTTTGAATTTCCCGCCCCGGAAACCCCCAAAAAACATTTTTAAAAAAGAATTTGCCGCCGGTGGGATTCGAACCCGCGACCTCTAGATCCAAATTTTTCGTCCGAAATCCCACTAGGCCATCCGAGCACTTTTTAGGAAAAKTGCTAGAAAAATGACTCTAGGATCGAAAATTGGGTTTTCAGAGGGTTTCTGAGTGTGAAATTGTGTGAAAATAGCGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAAGGCTAAAGTGGGTGTTTTTAGAGGAAATTGCGCCAATTTTGAGACCATTTTCATTAATTGATGATTTCAGGAGCATATTATAGGTTTCCATGCATGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>105 100 84 78 70 60 55 53 49 49 48 47 43 29 20 16 16 16 16 8 8 7 6 4 3 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>105 100 84 78 70 69 60 55 49 49 48 47 43 29 20 16 16 16 8 8 7 6 4 3 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTCTGTTGCTTTTAGTTTACTTT</pcr_primer_p1>
		<pcr_primer_p2>TCGCTATTTTCACACAATTTC</pcr_primer_p2>
		<pcr_amplicon_size>322</pcr_amplicon_size>
		<canonical_amplicon>CCTCTGTTGCTTTTAGTTTACTTTTTTCTAAACATTGGTTTTTGGAGCAAAAACATCCAATTTTCACCATTCAAACAAAACTTTCAGAATTTCTAACCGCGATTTTTGAATTTCCCGCCCCGGAAACCCCCAAAAAACATTTTTAAAAAAGAATTTGCCGCCGGTGGGATTCGAACCCGCGACCTCTAGATCCAAATTTTTCGTCCGAAATCCCACTAGGCCATCCGAGCACTTTTTAGGAAAAGTGCTAGAAAAATGACTCTAGGATCGAAAATTGGGTTTTCAGAGGGTTTCTGAGTGTGAAATTGTGTGAAAATAGCGA</canonical_amplicon>
		<polymorphic_amplicon>CCTCTGTTGCTTTTAGTTTACTTTTTTCTAAACATTGGTTTTTGGAGCAAAAACATCCAATTTTCACCATTCAAACAAAACTTTCAGAATTTCTAACCGCGATTTTTGAATTTCCCGCCCCGGAAACCCCCAAAAAACATTTTTAAAAAAGAATTTGCCGCCGGTGGGATTCGAACCCGCGACCTCTAGATCCAAATTTTTCGTCCGAAATCCCACTAGGCCATCCGAGCACTTTTTAGGAAAAKTGCTAGAAAAATGACTCTAGGATCGAAAATTGGGTTTTCAGAGGGTTTCTGAGTGTGAAATTGTGTGAAAATAGCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28946</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>86313</contig_pos>
        <strand>+</strand>
        <context>TTGATTTTTC[A/G]AAAAAATAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGAAATTGTGTGAAAATAGCGAGAAATCATAGAAAAATGTTGATTTTTC</left_flank>
        <right_flank>AAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCATCAGTGTCTGGCCACTCTCTCCATTCCCCACACTATTTCCAGGGGCAAAGTGTTAATCTGTTCGACCGTCAGGATTAGGGAAAAAGAAGAAGAAGAAGAAGAAATTCTGATGCTAGTTTTTGCCCCCGTGTGTCGAGTGGTGGCAACCTCTGTTGCTTTTAGTTTACTTTTTTCTAAACATTGGTTTTTGGAGCAAAAACATCCAATTTTCACCATTCAAACAAAACTTTCAGAATTTCTAACCGCGATTTTTGAATTTCCCGCCCCGGAAACCCCCAAAAAACATTTTTAAAAAAGAATTTGCCGCCGGTGGGATTCGAACCCGCGACCTCTAGATCCAAATTTTTCGTCCGAAATCCCACTAGGCCATCCGAGCACTTTTTAGGAAAAGTGCTAGAAAAATGACTCTAGGATCGAAAATTGGGTTTTCAGAGGGTTTCTGAGTGTGAAATTGTGTGAAAATAGCGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAAGGCTAAAGTGGGTGTTTTTAGAGGAAATTGCGCCAATTTTGAGACCATTTTCATTAATTGATGATTTCAGGAGCATATTATAGGTTTCCATGCATGCCAAACTCGTTTTTCGCACTTTCAACTTCAAATTGCACAAGTTTTCATCTCATTTCCTGTATCAGATCTTCGATTTCCCCTTTGGTTTCCGGAAATAGCCAACCGAC</canonical>
            <polymorphic>GCCATCAGTGTCTGGCCACTCTCTCCATTCCCCACACTATTTCCAGGGGCAAAGTGTTAATCTGTTCGACCGTCAGGATTAGGGAAAAAGAAGAAGAAGAAGAAGAAATTCTGATGCTAGTTTTTGCCCCCGTGTGTCGAGTGGTGGCAACCTCTGTTGCTTTTAGTTTACTTTTTTCTAAACATTGGTTTTTGGAGCAAAAACATCCAATTTTCACCATTCAAACAAAACTTTCAGAATTTCTAACCGCGATTTTTGAATTTCCCGCCCCGGAAACCCCCAAAAAACATTTTTAAAAAAGAATTTGCCGCCGGTGGGATTCGAACCCGCGACCTCTAGATCCAAATTTTTCGTCCGAAATCCCACTAGGCCATCCGAGCACTTTTTAGGAAAAGTGCTAGAAAAATGACTCTAGGATCGAAAATTGGGTTTTCAGAGGGTTTCTGAGTGTGAAATTGTGTGAAAATAGCGAGAAATCATAGAAAAATGTTGATTTTTCRAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAAGGCTAAAGTGGGTGTTTTTAGAGGAAATTGCGCCAATTTTGAGACCATTTTCATTAATTGATGATTTCAGGAGCATATTATAGGTTTCCATGCATGCCAAACTCGTTTTTCGCACTTTCAACTTCAAATTGCACAAGTTTTCATCTCATTTCCTGTATCAGATCTTCGATTTCCCCTTTGGTTTCCGGAAATAGCCAACCGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 321 177</canonical_bands>
                <polymorphic_bands>679 321</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>267 184 177 97 80 71 67 36 21</canonical_bands>
                <polymorphic_bands>267 257 184 97 71 67 36 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTCTGTTGCTTTTAGTTTACTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAACTCAATTTTACAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>647</pcr_amplicon_size>
		<canonical_amplicon>CCTCTGTTGCTTTTAGTTTACTTTTTTCTAAACATTGGTTTTTGGAGCAAAAACATCCAATTTTCACCATTCAAACAAAACTTTCAGAATTTCTAACCGCGATTTTTGAATTTCCCGCCCCGGAAACCCCCAAAAAACATTTTTAAAAAAGAATTTGCCGCCGGTGGGATTCGAACCCGCGACCTCTAGATCCAAATTTTTCGTCCGAAATCCCACTAGGCCATCCGAGCACTTTTTAGGAAAAGTGCTAGAAAAATGACTCTAGGATCGAAAATTGGGTTTTCAGAGGGTTTCTGAGTGTGAAATTGTGTGAAAATAGCGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>CCTCTGTTGCTTTTAGTTTACTTTTTTCTAAACATTGGTTTTTGGAGCAAAAACATCCAATTTTCACCATTCAAACAAAACTTTCAGAATTTCTAACCGCGATTTTTGAATTTCCCGCCCCGGAAACCCCCAAAAAACATTTTTAAAAAAGAATTTGCCGCCGGTGGGATTCGAACCCGCGACCTCTAGATCCAAATTTTTCGTCCGAAATCCCACTAGGCCATCCGAGCACTTTTTAGGAAAAGTGCTAGAAAAATGACTCTAGGATCGAAAATTGGGTTTTCAGAGGGTTTCTGAGTGTGAAATTGTGTGAAAATAGCGAGAAATCATAGAAAAATGTTGATTTTTCRAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28947</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>86334</contig_pos>
        <strand>+</strand>
        <context>GACCCAAAAA[A/T]TTTGAGWCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAA</left_flank>
        <right_flank>TTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCCATTCCCCACACTATTTCCAGGGGCAAAGTGTTAATCTGTTCGACCGTCAGGATTAGGGAAAAAGAAGAAGAAGAAGAAGAAATTCTGATGCTAGTTTTTGCCCCCGTGTGTCGAGTGGTGGCAACCTCTGTTGCTTTTAGTTTACTTTTTTCTAAACATTGGTTTTTGGAGCAAAAACATCCAATTTTCACCATTCAAACAAAACTTTCAGAATTTCTAACCGCGATTTTTGAATTTCCCGCCCCGGAAACCCCCAAAAAACATTTTTAAAAAAGAATTTGCCGCCGGTGGGATTCGAACCCGCGACCTCTAGATCCAAATTTTTCGTCCGAAATCCCACTAGGCCATCCGAGCACTTTTTAGGAAAAGTGCTAGAAAAATGACTCTAGGATCGAAAATTGGGTTTTCAGAGGGTTTCTGAGTGTGAAATTGTGTGAAAATAGCGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAAGGCTAAAGTGGGTGTTTTTAGAGGAAATTGCGCCAATTTTGAGACCATTTTCATTAATTGATGATTTCAGGAGCATATTATAGGTTTCCATGCATGCCAAACTCGTTTTTCGCACTTTCAACTTCAAATTGCACAAGTTTTCATCTCATTTCCTGTATCAGATCTTCGATTTCCCCTTTGGTTTCCGGAAATAGCCAACCGACTAAAGTGAAAAATGAAAAAGA</canonical>
            <polymorphic>TCTCCATTCCCCACACTATTTCCAGGGGCAAAGTGTTAATCTGTTCGACCGTCAGGATTAGGGAAAAAGAAGAAGAAGAAGAAGAAATTCTGATGCTAGTTTTTGCCCCCGTGTGTCGAGTGGTGGCAACCTCTGTTGCTTTTAGTTTACTTTTTTCTAAACATTGGTTTTTGGAGCAAAAACATCCAATTTTCACCATTCAAACAAAACTTTCAGAATTTCTAACCGCGATTTTTGAATTTCCCGCCCCGGAAACCCCCAAAAAACATTTTTAAAAAAGAATTTGCCGCCGGTGGGATTCGAACCCGCGACCTCTAGATCCAAATTTTTCGTCCGAAATCCCACTAGGCCATCCGAGCACTTTTTAGGAAAAGTGCTAGAAAAATGACTCTAGGATCGAAAATTGGGTTTTCAGAGGGTTTCTGAGTGTGAAATTGTGTGAAAATAGCGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAAWTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAAGGCTAAAGTGGGTGTTTTTAGAGGAAATTGCGCCAATTTTGAGACCATTTTCATTAATTGATGATTTCAGGAGCATATTATAGGTTTCCATGCATGCCAAACTCGTTTTTCGCACTTTCAACTTCAAATTGCACAAGTTTTCATCTCATTTCCTGTATCAGATCTTCGATTTCCCCTTTGGTTTCCGGAAATAGCCAACCGACTAAAGTGAAAAATGAAAAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>281 174 147 131 85 75 43 43 21</canonical_bands>
                <polymorphic_bands>321 281 131 85 75 43 43 21</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>105 102 98 85 78 75 71 65 43 43 43 42 39 31 29 21 21 9</canonical_bands>
                <polymorphic_bands>170 102 98 85 78 75 71 43 43 43 42 39 31 29 21 21 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGAGAAATCATAGAAAAATGT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAACTCAATTTTACAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>329</pcr_amplicon_size>
		<canonical_amplicon>GCGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GCGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAAWTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28948</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>86341</contig_pos>
        <strand>+</strand>
        <context>AAAWTTTGAG[A/T]CAGTttttct</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAG</left_flank>
        <right_flank>CAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCCCACACTATTTCCAGGGGCAAAGTGTTAATCTGTTCGACCGTCAGGATTAGGGAAAAAGAAGAAGAAGAAGAAGAAATTCTGATGCTAGTTTTTGCCCCCGTGTGTCGAGTGGTGGCAACCTCTGTTGCTTTTAGTTTACTTTTTTCTAAACATTGGTTTTTGGAGCAAAAACATCCAATTTTCACCATTCAAACAAAACTTTCAGAATTTCTAACCGCGATTTTTGAATTTCCCGCCCCGGAAACCCCCAAAAAACATTTTTAAAAAAGAATTTGCCGCCGGTGGGATTCGAACCCGCGACCTCTAGATCCAAATTTTTCGTCCGAAATCCCACTAGGCCATCCGAGCACTTTTTAGGAAAAGTGCTAGAAAAATGACTCTAGGATCGAAAATTGGGTTTTCAGAGGGTTTCTGAGTGTGAAATTGTGTGAAAATAGCGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAAGGCTAAAGTGGGTGTTTTTAGAGGAAATTGCGCCAATTTTGAGACCATTTTCATTAATTGATGATTTCAGGAGCATATTATAGGTTTCCATGCATGCCAAACTCGTTTTTCGCACTTTCAACTTCAAATTGCACAAGTTTTCATCTCATTTCCTGTATCAGATCTTCGATTTCCCCTTTGGTTTCCGGAAATAGCCAACCGACTAAAGTGAAAAATGAAAAAGAGGAAAAA</canonical>
            <polymorphic>TCCCCACACTATTTCCAGGGGCAAAGTGTTAATCTGTTCGACCGTCAGGATTAGGGAAAAAGAAGAAGAAGAAGAAGAAATTCTGATGCTAGTTTTTGCCCCCGTGTGTCGAGTGGTGGCAACCTCTGTTGCTTTTAGTTTACTTTTTTCTAAACATTGGTTTTTGGAGCAAAAACATCCAATTTTCACCATTCAAACAAAACTTTCAGAATTTCTAACCGCGATTTTTGAATTTCCCGCCCCGGAAACCCCCAAAAAACATTTTTAAAAAAGAATTTGCCGCCGGTGGGATTCGAACCCGCGACCTCTAGATCCAAATTTTTCGTCCGAAATCCCACTAGGCCATCCGAGCACTTTTTAGGAAAAGTGCTAGAAAAATGACTCTAGGATCGAAAATTGGGTTTTCAGAGGGTTTCTGAGTGTGAAATTGTGTGAAAATAGCGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGWCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAAGGCTAAAGTGGGTGTTTTTAGAGGAAATTGCGCCAATTTTGAGACCATTTTCATTAATTGATGATTTCAGGAGCATATTATAGGTTTCCATGCATGCCAAACTCGTTTTTCGCACTTTCAACTTCAAATTGCACAAGTTTTCATCTCATTTCCTGTATCAGATCTTCGATTTCCCCTTTGGTTTCCGGAAATAGCCAACCGACTAAAGTGAAAAATGAAAAAGAGGAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>388 290 117 115 90</canonical_bands>
                <polymorphic_bands>388 290 232 90</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAGAAATCATAGAAAAATGTTG</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAACTCAATTTTACAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>328</pcr_amplicon_size>
		<canonical_amplicon>CGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>CGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGWCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28949</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>86352</contig_pos>
        <strand></strand>
        <context>CAGTttttct[T/C]cctkcaamtg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCT</left_flank>
        <right_flank>CCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCAGGGGCAAAGTGTTAATCTGTTCGACCGTCAGGATTAGGGAAAAAGAAGAAGAAGAAGAAGAAATTCTGATGCTAGTTTTTGCCCCCGTGTGTCGAGTGGTGGCAACCTCTGTTGCTTTTAGTTTACTTTTTTCTAAACATTGGTTTTTGGAGCAAAAACATCCAATTTTCACCATTCAAACAAAACTTTCAGAATTTCTAACCGCGATTTTTGAATTTCCCGCCCCGGAAACCCCCAAAAAACATTTTTAAAAAAGAATTTGCCGCCGGTGGGATTCGAACCCGCGACCTCTAGATCCAAATTTTTCGTCCGAAATCCCACTAGGCCATCCGAGCACTTTTTAGGAAAAGTGCTAGAAAAATGACTCTAGGATCGAAAATTGGGTTTTCAGAGGGTTTCTGAGTGTGAAATTGTGTGAAAATAGCGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAAGGCTAAAGTGGGTGTTTTTAGAGGAAATTGCGCCAATTTTGAGACCATTTTCATTAATTGATGATTTCAGGAGCATATTATAGGTTTCCATGCATGCCAAACTCGTTTTTCGCACTTTCAACTTCAAATTGCACAAGTTTTCATCTCATTTCCTGTATCAGATCTTCGATTTCCCCTTTGGTTTCCGGAAATAGCCAACCGACTAAAGTGAAAAATGAAAAAGAGGAAAAAGAGAGGCAGTA</canonical>
            <polymorphic>TTTCCAGGGGCAAAGTGTTAATCTGTTCGACCGTCAGGATTAGGGAAAAAGAAGAAGAAGAAGAAGAAATTCTGATGCTAGTTTTTGCCCCCGTGTGTCGAGTGGTGGCAACCTCTGTTGCTTTTAGTTTACTTTTTTCTAAACATTGGTTTTTGGAGCAAAAACATCCAATTTTCACCATTCAAACAAAACTTTCAGAATTTCTAACCGCGATTTTTGAATTTCCCGCCCCGGAAACCCCCAAAAAACATTTTTAAAAAAGAATTTGCCGCCGGTGGGATTCGAACCCGCGACCTCTAGATCCAAATTTTTCGTCCGAAATCCCACTAGGCCATCCGAGCACTTTTTAGGAAAAGTGCTAGAAAAATGACTCTAGGATCGAAAATTGGGTTTTCAGAGGGTTTCTGAGTGTGAAATTGTGTGAAAATAGCGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTYCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAAGGCTAAAGTGGGTGTTTTTAGAGGAAATTGCGCCAATTTTGAGACCATTTTCATTAATTGATGATTTCAGGAGCATATTATAGGTTTCCATGCATGCCAAACTCGTTTTTCGCACTTTCAACTTCAAATTGCACAAGTTTTCATCTCATTTCCTGTATCAGATCTTCGATTTCCCCTTTGGTTTCCGGAAATAGCCAACCGACTAAAGTGAAAAATGAAAAAGAGGAAAAAGAGAGGCAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGAAATCATAGAAAAATGTTG</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAACTCAATTTTACAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>328</pcr_amplicon_size>
		<canonical_amplicon>CGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>CGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTYCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28950</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>86356</contig_pos>
        <strand></strand>
        <context>ttttctycct[T/G]caamtggatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCT</left_flank>
        <right_flank>CAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGGGGCAAAGTGTTAATCTGTTCGACCGTCAGGATTAGGGAAAAAGAAGAAGAAGAAGAAGAAATTCTGATGCTAGTTTTTGCCCCCGTGTGTCGAGTGGTGGCAACCTCTGTTGCTTTTAGTTTACTTTTTTCTAAACATTGGTTTTTGGAGCAAAAACATCCAATTTTCACCATTCAAACAAAACTTTCAGAATTTCTAACCGCGATTTTTGAATTTCCCGCCCCGGAAACCCCCAAAAAACATTTTTAAAAAAGAATTTGCCGCCGGTGGGATTCGAACCCGCGACCTCTAGATCCAAATTTTTCGTCCGAAATCCCACTAGGCCATCCGAGCACTTTTTAGGAAAAGTGCTAGAAAAATGACTCTAGGATCGAAAATTGGGTTTTCAGAGGGTTTCTGAGTGTGAAATTGTGTGAAAATAGCGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAAGGCTAAAGTGGGTGTTTTTAGAGGAAATTGCGCCAATTTTGAGACCATTTTCATTAATTGATGATTTCAGGAGCATATTATAGGTTTCCATGCATGCCAAACTCGTTTTTCGCACTTTCAACTTCAAATTGCACAAGTTTTCATCTCATTTCCTGTATCAGATCTTCGATTTCCCCTTTGGTTTCCGGAAATAGCCAACCGACTAAAGTGAAAAATGAAAAAGAGGAAAAAGAGAGGCAGTAGATA</canonical>
            <polymorphic>CAGGGGCAAAGTGTTAATCTGTTCGACCGTCAGGATTAGGGAAAAAGAAGAAGAAGAAGAAGAAATTCTGATGCTAGTTTTTGCCCCCGTGTGTCGAGTGGTGGCAACCTCTGTTGCTTTTAGTTTACTTTTTTCTAAACATTGGTTTTTGGAGCAAAAACATCCAATTTTCACCATTCAAACAAAACTTTCAGAATTTCTAACCGCGATTTTTGAATTTCCCGCCCCGGAAACCCCCAAAAAACATTTTTAAAAAAGAATTTGCCGCCGGTGGGATTCGAACCCGCGACCTCTAGATCCAAATTTTTCGTCCGAAATCCCACTAGGCCATCCGAGCACTTTTTAGGAAAAGTGCTAGAAAAATGACTCTAGGATCGAAAATTGGGTTTTCAGAGGGTTTCTGAGTGTGAAATTGTGTGAAAATAGCGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTKCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAAGGCTAAAGTGGGTGTTTTTAGAGGAAATTGCGCCAATTTTGAGACCATTTTCATTAATTGATGATTTCAGGAGCATATTATAGGTTTCCATGCATGCCAAACTCGTTTTTCGCACTTTCAACTTCAAATTGCACAAGTTTTCATCTCATTTCCTGTATCAGATCTTCGATTTCCCCTTTGGTTTCCGGAAATAGCCAACCGACTAAAGTGAAAAATGAAAAAGAGGAAAAAGAGAGGCAGTAGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGAAATCATAGAAAAATGTTG</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAACTCAATTTTACAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>328</pcr_amplicon_size>
		<canonical_amplicon>CGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>CGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTKCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28951</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>86360</contig_pos>
        <strand></strand>
        <context>ctycctkcaa[A/C]tggatttttc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAA</left_flank>
        <right_flank>TGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCAAAGTGTTAATCTGTTCGACCGTCAGGATTAGGGAAAAAGAAGAAGAAGAAGAAGAAATTCTGATGCTAGTTTTTGCCCCCGTGTGTCGAGTGGTGGCAACCTCTGTTGCTTTTAGTTTACTTTTTTCTAAACATTGGTTTTTGGAGCAAAAACATCCAATTTTCACCATTCAAACAAAACTTTCAGAATTTCTAACCGCGATTTTTGAATTTCCCGCCCCGGAAACCCCCAAAAAACATTTTTAAAAAAGAATTTGCCGCCGGTGGGATTCGAACCCGCGACCTCTAGATCCAAATTTTTCGTCCGAAATCCCACTAGGCCATCCGAGCACTTTTTAGGAAAAGTGCTAGAAAAATGACTCTAGGATCGAAAATTGGGTTTTCAGAGGGTTTCTGAGTGTGAAATTGTGTGAAAATAGCGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAAGGCTAAAGTGGGTGTTTTTAGAGGAAATTGCGCCAATTTTGAGACCATTTTCATTAATTGATGATTTCAGGAGCATATTATAGGTTTCCATGCATGCCAAACTCGTTTTTCGCACTTTCAACTTCAAATTGCACAAGTTTTCATCTCATTTCCTGTATCAGATCTTCGATTTCCCCTTTGGTTTCCGGAAATAGCCAACCGACTAAAGTGAAAAATGAAAAAGAGGAAAAAGAGAGGCAGTAGATATTTG</canonical>
            <polymorphic>GGCAAAGTGTTAATCTGTTCGACCGTCAGGATTAGGGAAAAAGAAGAAGAAGAAGAAGAAATTCTGATGCTAGTTTTTGCCCCCGTGTGTCGAGTGGTGGCAACCTCTGTTGCTTTTAGTTTACTTTTTTCTAAACATTGGTTTTTGGAGCAAAAACATCCAATTTTCACCATTCAAACAAAACTTTCAGAATTTCTAACCGCGATTTTTGAATTTCCCGCCCCGGAAACCCCCAAAAAACATTTTTAAAAAAGAATTTGCCGCCGGTGGGATTCGAACCCGCGACCTCTAGATCCAAATTTTTCGTCCGAAATCCCACTAGGCCATCCGAGCACTTTTTAGGAAAAGTGCTAGAAAAATGACTCTAGGATCGAAAATTGGGTTTTCAGAGGGTTTCTGAGTGTGAAATTGTGTGAAAATAGCGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAMTGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAAGGCTAAAGTGGGTGTTTTTAGAGGAAATTGCGCCAATTTTGAGACCATTTTCATTAATTGATGATTTCAGGAGCATATTATAGGTTTCCATGCATGCCAAACTCGTTTTTCGCACTTTCAACTTCAAATTGCACAAGTTTTCATCTCATTTCCTGTATCAGATCTTCGATTTCCCCTTTGGTTTCCGGAAATAGCCAACCGACTAAAGTGAAAAATGAAAAAGAGGAAAAAGAGAGGCAGTAGATATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGAAATCATAGAAAAATGTTG</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAACTCAATTTTACAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>328</pcr_amplicon_size>
		<canonical_amplicon>CGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>CGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAMTGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28952</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>86375</contig_pos>
        <strand></strand>
        <context>tttttcacac[G/T]ttctaacctt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACAC</left_flank>
        <right_flank>TTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTCGACCGTCAGGATTAGGGAAAAAGAAGAAGAAGAAGAAGAAATTCTGATGCTAGTTTTTGCCCCCGTGTGTCGAGTGGTGGCAACCTCTGTTGCTTTTAGTTTACTTTTTTCTAAACATTGGTTTTTGGAGCAAAAACATCCAATTTTCACCATTCAAACAAAACTTTCAGAATTTCTAACCGCGATTTTTGAATTTCCCGCCCCGGAAACCCCCAAAAAACATTTTTAAAAAAGAATTTGCCGCCGGTGGGATTCGAACCCGCGACCTCTAGATCCAAATTTTTCGTCCGAAATCCCACTAGGCCATCCGAGCACTTTTTAGGAAAAGTGCTAGAAAAATGACTCTAGGATCGAAAATTGGGTTTTCAGAGGGTTTCTGAGTGTGAAATTGTGTGAAAATAGCGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAAGGCTAAAGTGGGTGTTTTTAGAGGAAATTGCGCCAATTTTGAGACCATTTTCATTAATTGATGATTTCAGGAGCATATTATAGGTTTCCATGCATGCCAAACTCGTTTTTCGCACTTTCAACTTCAAATTGCACAAGTTTTCATCTCATTTCCTGTATCAGATCTTCGATTTCCCCTTTGGTTTCCGGAAATAGCCAACCGACTAAAGTGAAAAATGAAAAAGAGGAAAAAGAGAGGCAGTAGATATTTGAAACCTATAATTATG</canonical>
            <polymorphic>TGTTCGACCGTCAGGATTAGGGAAAAAGAAGAAGAAGAAGAAGAAATTCTGATGCTAGTTTTTGCCCCCGTGTGTCGAGTGGTGGCAACCTCTGTTGCTTTTAGTTTACTTTTTTCTAAACATTGGTTTTTGGAGCAAAAACATCCAATTTTCACCATTCAAACAAAACTTTCAGAATTTCTAACCGCGATTTTTGAATTTCCCGCCCCGGAAACCCCCAAAAAACATTTTTAAAAAAGAATTTGCCGCCGGTGGGATTCGAACCCGCGACCTCTAGATCCAAATTTTTCGTCCGAAATCCCACTAGGCCATCCGAGCACTTTTTAGGAAAAGTGCTAGAAAAATGACTCTAGGATCGAAAATTGGGTTTTCAGAGGGTTTCTGAGTGTGAAATTGTGTGAAAATAGCGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACKTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAAGGCTAAAGTGGGTGTTTTTAGAGGAAATTGCGCCAATTTTGAGACCATTTTCATTAATTGATGATTTCAGGAGCATATTATAGGTTTCCATGCATGCCAAACTCGTTTTTCGCACTTTCAACTTCAAATTGCACAAGTTTTCATCTCATTTCCTGTATCAGATCTTCGATTTCCCCTTTGGTTTCCGGAAATAGCCAACCGACTAAAGTGAAAAATGAAAAAGAGGAAAAAGAGAGGCAGTAGATATTTGAAACCTATAATTATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAGAAATCATAGAAAAATGTTG</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAACTCAATTTTACAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>328</pcr_amplicon_size>
		<canonical_amplicon>CGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>CGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACKTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28953</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>86392</contig_pos>
        <strand></strand>
        <context>ccttgatttt[C/T]ggatttctca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTT</left_flank>
        <right_flank>GGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGGGAAAAAGAAGAAGAAGAAGAAGAAATTCTGATGCTAGTTTTTGCCCCCGTGTGTCGAGTGGTGGCAACCTCTGTTGCTTTTAGTTTACTTTTTTCTAAACATTGGTTTTTGGAGCAAAAACATCCAATTTTCACCATTCAAACAAAACTTTCAGAATTTCTAACCGCGATTTTTGAATTTCCCGCCCCGGAAACCCCCAAAAAACATTTTTAAAAAAGAATTTGCCGCCGGTGGGATTCGAACCCGCGACCTCTAGATCCAAATTTTTCGTCCGAAATCCCACTAGGCCATCCGAGCACTTTTTAGGAAAAGTGCTAGAAAAATGACTCTAGGATCGAAAATTGGGTTTTCAGAGGGTTTCTGAGTGTGAAATTGTGTGAAAATAGCGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAAGGCTAAAGTGGGTGTTTTTAGAGGAAATTGCGCCAATTTTGAGACCATTTTCATTAATTGATGATTTCAGGAGCATATTATAGGTTTCCATGCATGCCAAACTCGTTTTTCGCACTTTCAACTTCAAATTGCACAAGTTTTCATCTCATTTCCTGTATCAGATCTTCGATTTCCCCTTTGGTTTCCGGAAATAGCCAACCGACTAAAGTGAAAAATGAAAAAGAGGAAAAAGAGAGGCAGTAGATATTTGAAACCTATAATTATGCTTATATATGTGTGTGT</canonical>
            <polymorphic>TAGGGAAAAAGAAGAAGAAGAAGAAGAAATTCTGATGCTAGTTTTTGCCCCCGTGTGTCGAGTGGTGGCAACCTCTGTTGCTTTTAGTTTACTTTTTTCTAAACATTGGTTTTTGGAGCAAAAACATCCAATTTTCACCATTCAAACAAAACTTTCAGAATTTCTAACCGCGATTTTTGAATTTCCCGCCCCGGAAACCCCCAAAAAACATTTTTAAAAAAGAATTTGCCGCCGGTGGGATTCGAACCCGCGACCTCTAGATCCAAATTTTTCGTCCGAAATCCCACTAGGCCATCCGAGCACTTTTTAGGAAAAGTGCTAGAAAAATGACTCTAGGATCGAAAATTGGGTTTTCAGAGGGTTTCTGAGTGTGAAATTGTGTGAAAATAGCGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTYGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAAGGCTAAAGTGGGTGTTTTTAGAGGAAATTGCGCCAATTTTGAGACCATTTTCATTAATTGATGATTTCAGGAGCATATTATAGGTTTCCATGCATGCCAAACTCGTTTTTCGCACTTTCAACTTCAAATTGCACAAGTTTTCATCTCATTTCCTGTATCAGATCTTCGATTTCCCCTTTGGTTTCCGGAAATAGCCAACCGACTAAAGTGAAAAATGAAAAAGAGGAAAAAGAGAGGCAGTAGATATTTGAAACCTATAATTATGCTTATATATGTGTGTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>377 135 124 122 120 59 33 20 10</canonical_bands>
                <polymorphic_bands>512 124 122 120 59 33 20 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAGAAATCATAGAAAAATGTTG</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAACTCAATTTTACAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>328</pcr_amplicon_size>
		<canonical_amplicon>CGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>CGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTYGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28954</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>86407</contig_pos>
        <strand></strand>
        <context>ttctcacccc[T/C]gaaaaccccc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCC</left_flank>
        <right_flank>GAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAGAAGAAGAAATTCTGATGCTAGTTTTTGCCCCCGTGTGTCGAGTGGTGGCAACCTCTGTTGCTTTTAGTTTACTTTTTTCTAAACATTGGTTTTTGGAGCAAAAACATCCAATTTTCACCATTCAAACAAAACTTTCAGAATTTCTAACCGCGATTTTTGAATTTCCCGCCCCGGAAACCCCCAAAAAACATTTTTAAAAAAGAATTTGCCGCCGGTGGGATTCGAACCCGCGACCTCTAGATCCAAATTTTTCGTCCGAAATCCCACTAGGCCATCCGAGCACTTTTTAGGAAAAGTGCTAGAAAAATGACTCTAGGATCGAAAATTGGGTTTTCAGAGGGTTTCTGAGTGTGAAATTGTGTGAAAATAGCGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAAGGCTAAAGTGGGTGTTTTTAGAGGAAATTGCGCCAATTTTGAGACCATTTTCATTAATTGATGATTTCAGGAGCATATTATAGGTTTCCATGCATGCCAAACTCGTTTTTCGCACTTTCAACTTCAAATTGCACAAGTTTTCATCTCATTTCCTGTATCAGATCTTCGATTTCCCCTTTGGTTTCCGGAAATAGCCAACCGACTAAAGTGAAAAATGAAAAAGAGGAAAAAGAGAGGCAGTAGATATTTGAAACCTATAATTATGCTTATATATGTGTGTGTGCAGTGTCCTCCTTT</canonical>
            <polymorphic>AGAAGAAGAAGAAATTCTGATGCTAGTTTTTGCCCCCGTGTGTCGAGTGGTGGCAACCTCTGTTGCTTTTAGTTTACTTTTTTCTAAACATTGGTTTTTGGAGCAAAAACATCCAATTTTCACCATTCAAACAAAACTTTCAGAATTTCTAACCGCGATTTTTGAATTTCCCGCCCCGGAAACCCCCAAAAAACATTTTTAAAAAAGAATTTGCCGCCGGTGGGATTCGAACCCGCGACCTCTAGATCCAAATTTTTCGTCCGAAATCCCACTAGGCCATCCGAGCACTTTTTAGGAAAAGTGCTAGAAAAATGACTCTAGGATCGAAAATTGGGTTTTCAGAGGGTTTCTGAGTGTGAAATTGTGTGAAAATAGCGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCYGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAAGGCTAAAGTGGGTGTTTTTAGAGGAAATTGCGCCAATTTTGAGACCATTTTCATTAATTGATGATTTCAGGAGCATATTATAGGTTTCCATGCATGCCAAACTCGTTTTTCGCACTTTCAACTTCAAATTGCACAAGTTTTCATCTCATTTCCTGTATCAGATCTTCGATTTCCCCTTTGGTTTCCGGAAATAGCCAACCGACTAAAGTGAAAAATGAAAAAGAGGAAAAAGAGAGGCAGTAGATATTTGAAACCTATAATTATGCTTATATATGTGTGTGTGCAGTGTCCTCCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGAAATCATAGAAAAATGTTG</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAACTCAATTTTACAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>328</pcr_amplicon_size>
		<canonical_amplicon>CGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>CGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCYGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28955</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>86510</contig_pos>
        <strand></strand>
        <context>ctaggccatt[C/T]gagcactttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATT</left_flank>
        <right_flank>GAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGA</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAAACATCCAATTTTCACCATTCAAACAAAACTTTCAGAATTTCTAACCGCGATTTTTGAATTTCCCGCCCCGGAAACCCCCAAAAAACATTTTTAAAAAAGAATTTGCCGCCGGTGGGATTCGAACCCGCGACCTCTAGATCCAAATTTTTCGTCCGAAATCCCACTAGGCCATCCGAGCACTTTTTAGGAAAAGTGCTAGAAAAATGACTCTAGGATCGAAAATTGGGTTTTCAGAGGGTTTCTGAGTGTGAAATTGTGTGAAAATAGCGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAAGGCTAAAGTGGGTGTTTTTAGAGGAAATTGCGCCAATTTTGAGACCATTTTCATTAATTGATGATTTCAGGAGCATATTATAGGTTTCCATGCATGCCAAACTCGTTTTTCGCACTTTCAACTTCAAATTGCACAAGTTTTCATCTCATTTCCTGTATCAGATCTTCGATTTCCCCTTTGGTTTCCGGAAATAGCCAACCGACTAAAGTGAAAAATGAAAAAGAGGAAAAAGAGAGGCAGTAGATATTTGAAACCTATAATTATGCTTATATATGTGTGTGTGCAGTGTCCTCCTTTTCGATATCATATAGAGCGGCTTCCGGTTTTCTCTCTCTCTTTTTTTCTCAAATTTTACGTTGTTTTCGAATTTTACTAAATTTTGGTTCAAAAATCCGCATTT</canonical>
            <polymorphic>CAAAAACATCCAATTTTCACCATTCAAACAAAACTTTCAGAATTTCTAACCGCGATTTTTGAATTTCCCGCCCCGGAAACCCCCAAAAAACATTTTTAAAAAAGAATTTGCCGCCGGTGGGATTCGAACCCGCGACCTCTAGATCCAAATTTTTCGTCCGAAATCCCACTAGGCCATCCGAGCACTTTTTAGGAAAAGTGCTAGAAAAATGACTCTAGGATCGAAAATTGGGTTTTCAGAGGGTTTCTGAGTGTGAAATTGTGTGAAAATAGCGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTYGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAAGGCTAAAGTGGGTGTTTTTAGAGGAAATTGCGCCAATTTTGAGACCATTTTCATTAATTGATGATTTCAGGAGCATATTATAGGTTTCCATGCATGCCAAACTCGTTTTTCGCACTTTCAACTTCAAATTGCACAAGTTTTCATCTCATTTCCTGTATCAGATCTTCGATTTCCCCTTTGGTTTCCGGAAATAGCCAACCGACTAAAGTGAAAAATGAAAAAGAGGAAAAAGAGAGGCAGTAGATATTTGAAACCTATAATTATGCTTATATATGTGTGTGTGCAGTGTCCTCCTTTTCGATATCATATAGAGCGGCTTCCGGTTTTCTCTCTCTCTTTTTTTCTCAAATTTTACGTTGTTTTCGAATTTTACTAAATTTTGGTTCAAAAATCCGCATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>267 177 132 125 97 80 65 36 21</canonical_bands>
                <polymorphic_bands>288 177 132 125 97 80 65 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAGAAATCATAGAAAAATGTTG</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAACTCAATTTTACAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>328</pcr_amplicon_size>
		<canonical_amplicon>CGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>CGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTYGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28956</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>86550</contig_pos>
        <strand></strand>
        <context>tggttttagg[A/G]tcaaatttga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGG</left_flank>
        <right_flank>TCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTCTAACCGCGATTTTTGAATTTCCCGCCCCGGAAACCCCCAAAAAACATTTTTAAAAAAGAATTTGCCGCCGGTGGGATTCGAACCCGCGACCTCTAGATCCAAATTTTTCGTCCGAAATCCCACTAGGCCATCCGAGCACTTTTTAGGAAAAGTGCTAGAAAAATGACTCTAGGATCGAAAATTGGGTTTTCAGAGGGTTTCTGAGTGTGAAATTGTGTGAAAATAGCGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAAGGCTAAAGTGGGTGTTTTTAGAGGAAATTGCGCCAATTTTGAGACCATTTTCATTAATTGATGATTTCAGGAGCATATTATAGGTTTCCATGCATGCCAAACTCGTTTTTCGCACTTTCAACTTCAAATTGCACAAGTTTTCATCTCATTTCCTGTATCAGATCTTCGATTTCCCCTTTGGTTTCCGGAAATAGCCAACCGACTAAAGTGAAAAATGAAAAAGAGGAAAAAGAGAGGCAGTAGATATTTGAAACCTATAATTATGCTTATATATGTGTGTGTGCAGTGTCCTCCTTTTCGATATCATATAGAGCGGCTTCCGGTTTTCTCTCTCTCTTTTTTTCTCAAATTTTACGTTGTTTTCGAATTTTACTAAATTTTGGTTCAAAAATCCGCATTTTCACCCTTTTATCTTAATTTTCAAGGTTTCTAACTCTGAT</canonical>
            <polymorphic>AATTTCTAACCGCGATTTTTGAATTTCCCGCCCCGGAAACCCCCAAAAAACATTTTTAAAAAAGAATTTGCCGCCGGTGGGATTCGAACCCGCGACCTCTAGATCCAAATTTTTCGTCCGAAATCCCACTAGGCCATCCGAGCACTTTTTAGGAAAAGTGCTAGAAAAATGACTCTAGGATCGAAAATTGGGTTTTCAGAGGGTTTCTGAGTGTGAAATTGTGTGAAAATAGCGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGRTCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAAGGCTAAAGTGGGTGTTTTTAGAGGAAATTGCGCCAATTTTGAGACCATTTTCATTAATTGATGATTTCAGGAGCATATTATAGGTTTCCATGCATGCCAAACTCGTTTTTCGCACTTTCAACTTCAAATTGCACAAGTTTTCATCTCATTTCCTGTATCAGATCTTCGATTTCCCCTTTGGTTTCCGGAAATAGCCAACCGACTAAAGTGAAAAATGAAAAAGAGGAAAAAGAGAGGCAGTAGATATTTGAAACCTATAATTATGCTTATATATGTGTGTGTGCAGTGTCCTCCTTTTCGATATCATATAGAGCGGCTTCCGGTTTTCTCTCTCTCTTTTTTTCTCAAATTTTACGTTGTTTTCGAATTTTACTAAATTTTGGTTCAAAAATCCGCATTTTCACCCTTTTATCTTAATTTTCAAGGTTTCTAACTCTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>280 244 222 101 77 76</canonical_bands>
                <polymorphic_bands>298 280 244 101 77</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAGAAATCATAGAAAAATGTTG</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAACTCAATTTTACAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>328</pcr_amplicon_size>
		<canonical_amplicon>CGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGATCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>CGAGAAATCATAGAAAAATGTTGATTTTTCGAAAAAATAGTGACCCAAAAATTTTGAGTCAGTTTTTCTTCCTTCAAATGGATTTTTCACACGTTCTAACCTTGATTTTCGGATTTCTCACCCCTGAAAACCCCCAAAAACATTTTTAAAAAATAATTTGCCACCGGTGGGATTCAAACCCAGAACCCTAGATCCAAATTTTTCGTCGAAAATCCCACTAGGCCATTCGAGCACTTTTGAAAAAATCGCTAGAAAGTTGGTTTTAGGRTCAAATTTGAAGATTTGCGGGGTTTTTGAAGGTTTTAGAGCTGTAAAATTGAGTTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28957</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>88163</contig_pos>
        <strand></strand>
        <context>aaatgttttt[G/C]grggttttca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TCGCGGGTTCGATTCCCACCGGTGGCAACTTCTTTTTAAAAAATGTTTTT</left_flank>
        <right_flank>GGGGTTTTCAGGGGTGGGAATTTCAAAAATCTGGGTACGAAAGCTTGAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAAATTTTTGACTCAAAAACCCCCACAAAACCCATATTTTAACCTTAAAATCGATTTTCTAGCGATTTCCCAAAAATGTGCTCAAATGGCCTAGTGGGATTTTCGACGAAAAATTTGGATCTAGGGTTCCGGGTTTGAATCCCACCGGTGGCAAATTATTTTTTAAAAATGTTTTTGGGGGTTTTCAGGGGTGAGAAATCTGAAAATCAAGGTTAGAACGTGTGAAAAATCCATTTGAAGGAAGAAAAACTGACTCAAAATTTTTGGGTCACTATTTTTTCGAAAAATCAACATTTTTCTATGATTTCTCGCTATTTTCACACAATTTCACACTCAGAAACCCTCTGAAAACCCAATTTTCGATCCTAGAGTCATTTTTCTAGCAATTTTCCTAAAAAGTGCTCGGATGGTCTAGTGGGGTTTTCGACGAAAAGTTTGGATCTAGAGGTCGCGGGTTCGATTCCCACCGGTGGCAACTTCTTTTTAAAAAATGTTTTTGGGGGTTTTCAGGGGTGGGAATTTCAAAAATCTGGGTACGAAAGCTTGAAAATTTAGTTTGAACGATGAAAATAGGGATTTCGGTCAAAAAAAGATTACTAGGCAACTTTTCCAGTGATTTTCGGCTTTTTCACGCAATTTTACATTCGAAAACCTGTCTAAAATCTATATTTTTACCCGAAAATCATGTTTCTAACAATTTTCCAAAAATGTGCTCAGATGGCCTAGTGCGAATTTCAACGGAAAATTTGGATTTAGGGGTCTCTGGTTCGACTCCCACTGGTGGCAACTTCTCTTTGGAAGTGTTTTTAGGGGTTTTCGGGGGCGGCAAATTCAAAAAATGAGGTTAGAAAGCCTGAAAAATGAGTTTTACTAGGGAAAATACAAATATTTTTTCAAGTTTGTAGGTTTAACTTTCTCGGAATTTCAGAAATCCCCAAATTTTCGAGAAAAAAGCCAACATTTTTTTTTCAAAAAAAAAGGAGACGTAAAAAACAGAGC</canonical>
            <polymorphic>CTAAATTTTTGACTCAAAAACCCCCACAAAACCCATATTTTAACCTTAAAATCGATTTTCTAGCGATTTCCCAAAAATGTGCTCAAATGGCCTAGTGGGATTTTCGACGAAAAATTTGGATCTAGGGTTCCGGGTTTGAATCCCACCGGTGGCAAATTATTTTTTAAAAATGTTTTTSGGGGTTTTCAGGGGTGAGAAATCTGAAAATCAAGGTTAGAACGTGTGAAAAATCCATTTGAAGGAAGAAAAACTGACTCAAAATTTTTGGGTCACTATTTTTTCGAAAAATCAACATTTTTCTATGATTTCTCGCTATTTTCACACAATTTCACACTCAGAAACCCTCTGAAAACCCAATTTTCGATCCTAGAGTCATTTTTCTAGCAATTTTCCTAAAAAGTGCTCGGATGGTCTAGTGGGGTTTTCGACGAAAAGTTTGGATCTAGAGGTCGCGGGTTCGATTCCCACCGGTGGCAACTTCTTTTTAAAAAATGTTTTTGGGGGTTTTCAGGGGTGGGAATTTCAAAAATCTGGGTACGAAAGCTTGAAAATTTAGTTTGAACGATGAAAATAGGGATTTCGGTCAAAAAAAGATTACTAGGCAACTTTTCCAGTGATTTTCGGCTTTTTCACGCAATTTTACATTCGAAAACCTGTCTAAAATCTATATTTTTACCCGAAAATCATGTTTCTAACAATTTTCCAAAAATGTGCTCAGATGGCCTAGTGCGAATTTCAACGGAAAATTTGGATTTAGGGGTCTCTGGTTCGACTCCCACTGGTGGCAACTTCTCTTTGGAAGTGTTTTTAGGGGTTTTCGGGGGCGGCAAATTCAAAAAATGAGGTTAGAAAGCCTGAAAAATGAGTTTTACTAGGGAAAATACAAATATTTTTTCAAGTTTGTAGGTTTAACTTTCTCGGAATTTCAGAAATCCCCAAATTTTCGAGAAAAAAGCCAACATTTTTTTTTCAAAAAAAAAGGAGACGTAAAAAACAGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGCTATTTTCACACAATTTC</pcr_primer_p1>
		<pcr_primer_p2>ACTGGAAAAGTTGCCTAGTAATC</pcr_primer_p2>
		<pcr_amplicon_size>306</pcr_amplicon_size>
		<canonical_amplicon>TCGCTATTTTCACACAATTTCACACTCAGAAACCCTCTGAAAACCCAATTTTCGATCCTAGAGTCATTTTTCTAGCAATTTTCCTAAAAAGTGCTCGGATGGTCTAGTGGGGTTTTCGACGAAAAGTTTGGATCTAGAGGTCGCGGGTTCGATTCCCACCGGTGGCAACTTCTTTTTAAAAAATGTTTTTGGGGGTTTTCAGGGGTGGGAATTTCAAAAATCTGGGTACGAAAGCTTGAAAATTTAGTTTGAACGATGAAAATAGGGATTTCGGTCAAAAAAAGATTACTAGGCAACTTTTCCAGT</canonical_amplicon>
		<polymorphic_amplicon>TCGCTATTTTCACACAATTTCACACTCAGAAACCCTCTGAAAACCCAATTTTCGATCCTAGAGTCATTTTTCTAGCAATTTTCCTAAAAAGTGCTCGGATGGTCTAGTGGGGTTTTCGACGAAAAGTTTGGATCTAGAGGTCGCGGGTTCGATTCCCACCGGTGGCAACTTCTTTTTAAAAAATGTTTTTGGGGGTTTTCAGGGGTGGGAATTTCAAAAATCTGGGTACGAAAGCTTGAAAATTTAGTTTGAACGATGAAAATAGGGATTTCGGTCAAAAAAAGATTACTAGGCAACTTTTCCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28958</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>88165</contig_pos>
        <strand></strand>
        <context>atgtttttsg[G/A]ggttttcagg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GCGGGTTCGATTCCCACCGGTGGCAACTTCTTTTTAAAAAATGTTTTTGG</left_flank>
        <right_flank>GGTTTTCAGGGGTGGGAATTTCAAAAATCTGGGTACGAAAGCTTGAAAAT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTTTGACTCAAAAACCCCCACAAAACCCATATTTTAACCTTAAAATCGATTTTCTAGCGATTTCCCAAAAATGTGCTCAAATGGCCTAGTGGGATTTTCGACGAAAAATTTGGATCTAGGGTTCCGGGTTTGAATCCCACCGGTGGCAAATTATTTTTTAAAAATGTTTTTGGGGGTTTTCAGGGGTGAGAAATCTGAAAATCAAGGTTAGAACGTGTGAAAAATCCATTTGAAGGAAGAAAAACTGACTCAAAATTTTTGGGTCACTATTTTTTCGAAAAATCAACATTTTTCTATGATTTCTCGCTATTTTCACACAATTTCACACTCAGAAACCCTCTGAAAACCCAATTTTCGATCCTAGAGTCATTTTTCTAGCAATTTTCCTAAAAAGTGCTCGGATGGTCTAGTGGGGTTTTCGACGAAAAGTTTGGATCTAGAGGTCGCGGGTTCGATTCCCACCGGTGGCAACTTCTTTTTAAAAAATGTTTTTGGGGGTTTTCAGGGGTGGGAATTTCAAAAATCTGGGTACGAAAGCTTGAAAATTTAGTTTGAACGATGAAAATAGGGATTTCGGTCAAAAAAAGATTACTAGGCAACTTTTCCAGTGATTTTCGGCTTTTTCACGCAATTTTACATTCGAAAACCTGTCTAAAATCTATATTTTTACCCGAAAATCATGTTTCTAACAATTTTCCAAAAATGTGCTCAGATGGCCTAGTGCGAATTTCAACGGAAAATTTGGATTTAGGGGTCTCTGGTTCGACTCCCACTGGTGGCAACTTCTCTTTGGAAGTGTTTTTAGGGGTTTTCGGGGGCGGCAAATTCAAAAAATGAGGTTAGAAAGCCTGAAAAATGAGTTTTACTAGGGAAAATACAAATATTTTTTCAAGTTTGTAGGTTTAACTTTCTCGGAATTTCAGAAATCCCCAAATTTTCGAGAAAAAAGCCAACATTTTTTTTTCAAAAAAAAAGGAGACGTAAAAAACAGAGCAG</canonical>
            <polymorphic>AAATTTTTGACTCAAAAACCCCCACAAAACCCATATTTTAACCTTAAAATCGATTTTCTAGCGATTTCCCAAAAATGTGCTCAAATGGCCTAGTGGGATTTTCGACGAAAAATTTGGATCTAGGGTTCCGGGTTTGAATCCCACCGGTGGCAAATTATTTTTTAAAAATGTTTTTGGRGGTTTTCAGGGGTGAGAAATCTGAAAATCAAGGTTAGAACGTGTGAAAAATCCATTTGAAGGAAGAAAAACTGACTCAAAATTTTTGGGTCACTATTTTTTCGAAAAATCAACATTTTTCTATGATTTCTCGCTATTTTCACACAATTTCACACTCAGAAACCCTCTGAAAACCCAATTTTCGATCCTAGAGTCATTTTTCTAGCAATTTTCCTAAAAAGTGCTCGGATGGTCTAGTGGGGTTTTCGACGAAAAGTTTGGATCTAGAGGTCGCGGGTTCGATTCCCACCGGTGGCAACTTCTTTTTAAAAAATGTTTTTGGGGGTTTTCAGGGGTGGGAATTTCAAAAATCTGGGTACGAAAGCTTGAAAATTTAGTTTGAACGATGAAAATAGGGATTTCGGTCAAAAAAAGATTACTAGGCAACTTTTCCAGTGATTTTCGGCTTTTTCACGCAATTTTACATTCGAAAACCTGTCTAAAATCTATATTTTTACCCGAAAATCATGTTTCTAACAATTTTCCAAAAATGTGCTCAGATGGCCTAGTGCGAATTTCAACGGAAAATTTGGATTTAGGGGTCTCTGGTTCGACTCCCACTGGTGGCAACTTCTCTTTGGAAGTGTTTTTAGGGGTTTTCGGGGGCGGCAAATTCAAAAAATGAGGTTAGAAAGCCTGAAAAATGAGTTTTACTAGGGAAAATACAAATATTTTTTCAAGTTTGTAGGTTTAACTTTCTCGGAATTTCAGAAATCCCCAAATTTTCGAGAAAAAAGCCAACATTTTTTTTTCAAAAAAAAAGGAGACGTAAAAAACAGAGCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGCTATTTTCACACAATTTC</pcr_primer_p1>
		<pcr_primer_p2>ACTGGAAAAGTTGCCTAGTAATC</pcr_primer_p2>
		<pcr_amplicon_size>306</pcr_amplicon_size>
		<canonical_amplicon>TCGCTATTTTCACACAATTTCACACTCAGAAACCCTCTGAAAACCCAATTTTCGATCCTAGAGTCATTTTTCTAGCAATTTTCCTAAAAAGTGCTCGGATGGTCTAGTGGGGTTTTCGACGAAAAGTTTGGATCTAGAGGTCGCGGGTTCGATTCCCACCGGTGGCAACTTCTTTTTAAAAAATGTTTTTGGGGGTTTTCAGGGGTGGGAATTTCAAAAATCTGGGTACGAAAGCTTGAAAATTTAGTTTGAACGATGAAAATAGGGATTTCGGTCAAAAAAAGATTACTAGGCAACTTTTCCAGT</canonical_amplicon>
		<polymorphic_amplicon>TCGCTATTTTCACACAATTTCACACTCAGAAACCCTCTGAAAACCCAATTTTCGATCCTAGAGTCATTTTTCTAGCAATTTTCCTAAAAAGTGCTCGGATGGTCTAGTGGGGTTTTCGACGAAAAGTTTGGATCTAGAGGTCGCGGGTTCGATTCCCACCGGTGGCAACTTCTTTTTAAAAAATGTTTTTGGGGGTTTTCAGGGGTGGGAATTTCAAAAATCTGGGTACGAAAGCTTGAAAATTTAGTTTGAACGATGAAAATAGGGATTTCGGTCAAAAAAAGATTACTAGGCAACTTTTCCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28959</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>88285</contig_pos>
        <strand>+</strand>
        <context>CAGTGATTTT[C/T]GGCTTTTTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGGGATTTCGGTCAAAAAAAGATTACTAGGCAACTTTTCCAGTGATTTT</left_flank>
        <right_flank>GGCTTTTTCACGCAATTTTACATTCGAAAACCTGTCTAAAATCTATATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGGTTCCGGGTTTGAATCCCACCGGTGGCAAATTATTTTTTAAAAATGTTTTTGGGGGTTTTCAGGGGTGAGAAATCTGAAAATCAAGGTTAGAACGTGTGAAAAATCCATTTGAAGGAAGAAAAACTGACTCAAAATTTTTGGGTCACTATTTTTTCGAAAAATCAACATTTTTCTATGATTTCTCGCTATTTTCACACAATTTCACACTCAGAAACCCTCTGAAAACCCAATTTTCGATCCTAGAGTCATTTTTCTAGCAATTTTCCTAAAAAGTGCTCGGATGGTCTAGTGGGGTTTTCGACGAAAAGTTTGGATCTAGAGGTCGCGGGTTCGATTCCCACCGGTGGCAACTTCTTTTTAAAAAATGTTTTTGGGGGTTTTCAGGGGTGGGAATTTCAAAAATCTGGGTACGAAAGCTTGAAAATTTAGTTTGAACGATGAAAATAGGGATTTCGGTCAAAAAAAGATTACTAGGCAACTTTTCCAGTGATTTTCGGCTTTTTCACGCAATTTTACATTCGAAAACCTGTCTAAAATCTATATTTTTACCCGAAAATCATGTTTCTAACAATTTTCCAAAAATGTGCTCAGATGGCCTAGTGCGAATTTCAACGGAAAATTTGGATTTAGGGGTCTCTGGTTCGACTCCCACTGGTGGCAACTTCTCTTTGGAAGTGTTTTTAGGGGTTTTCGGGGGCGGCAAATTCAAAAAATGAGGTTAGAAAGCCTGAAAAATGAGTTTTACTAGGGAAAATACAAATATTTTTTCAAGTTTGTAGGTTTAACTTTCTCGGAATTTCAGAAATCCCCAAATTTTCGAGAAAAAAGCCAACATTTTTTTTTCAAAAAAAAAGGAGACGTAAAAAACAGAGCAGCATAACTAATAAGAGCCACTTTTTTTCCTCCGACCTTTTCTTCTTTTTTTCTGGCTTTTTTTTTTGGGTTATGTCATGCTTGACACATGGTCCCAGGTCCTCCAAAACGAGAGAGAGTAT</canonical>
            <polymorphic>TAGGGTTCCGGGTTTGAATCCCACCGGTGGCAAATTATTTTTTAAAAATGTTTTTGGGGGTTTTCAGGGGTGAGAAATCTGAAAATCAAGGTTAGAACGTGTGAAAAATCCATTTGAAGGAAGAAAAACTGACTCAAAATTTTTGGGTCACTATTTTTTCGAAAAATCAACATTTTTCTATGATTTCTCGCTATTTTCACACAATTTCACACTCAGAAACCCTCTGAAAACCCAATTTTCGATCCTAGAGTCATTTTTCTAGCAATTTTCCTAAAAAGTGCTCGGATGGTCTAGTGGGGTTTTCGACGAAAAGTTTGGATCTAGAGGTCGCGGGTTCGATTCCCACCGGTGGCAACTTCTTTTTAAAAAATGTTTTTGGGGGTTTTCAGGGGTGGGAATTTCAAAAATCTGGGTACGAAAGCTTGAAAATTTAGTTTGAACGATGAAAATAGGGATTTCGGTCAAAAAAAGATTACTAGGCAACTTTTCCAGTGATTTTYGGCTTTTTCACGCAATTTTACATTCGAAAACCTGTCTAAAATCTATATTTTTACCCGAAAATCATGTTTCTAACAATTTTCCAAAAATGTGCTCAGATGGCCTAGTGCGAATTTCAACGGAAAATTTGGATTTAGGGGTCTCTGGTTCGACTCCCACTGGTGGCAACTTCTCTTTGGAAGTGTTTTTAGGGGTTTTCGGGGGCGGCAAATTCAAAAAATGAGGTTAGAAAGCCTGAAAAATGAGTTTTACTAGGGAAAATACAAATATTTTTTCAAGTTTGTAGGTTTAACTTTCTCGGAATTTCAGAAATCCCCAAATTTTCGAGAAAAAAGCCAACATTTTTTTTTCAAAAAAAAAGGAGACGTAAAAAACAGAGCAGCATAACTAATAAGAGCCACTTTTTTTCCTCCGACCTTTTCTTCTTTTTTTCTGGCTTTTTTTTTTGGGTTATGTCATGCTTGACACATGGTCCCAGGTCCTCCAAAACGAGAGAGAGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGCTATTTTCACACAATTTC</pcr_primer_p1>
		<pcr_primer_p2>AAGTTAAACCTACAAACTTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>606</pcr_amplicon_size>
		<canonical_amplicon>TCGCTATTTTCACACAATTTCACACTCAGAAACCCTCTGAAAACCCAATTTTCGATCCTAGAGTCATTTTTCTAGCAATTTTCCTAAAAAGTGCTCGGATGGTCTAGTGGGGTTTTCGACGAAAAGTTTGGATCTAGAGGTCGCGGGTTCGATTCCCACCGGTGGCAACTTCTTTTTAAAAAATGTTTTTGGGGGTTTTCAGGGGTGGGAATTTCAAAAATCTGGGTACGAAAGCTTGAAAATTTAGTTTGAACGATGAAAATAGGGATTTCGGTCAAAAAAAGATTACTAGGCAACTTTTCCAGTGATTTTCGGCTTTTTCACGCAATTTTACATTCGAAAACCTGTCTAAAATCTATATTTTTACCCGAAAATCATGTTTCTAACAATTTTCCAAAAATGTGCTCAGATGGCCTAGTGCGAATTTCAACGGAAAATTTGGATTTAGGGGTCTCTGGTTCGACTCCCACTGGTGGCAACTTCTCTTTGGAAGTGTTTTTAGGGGTTTTCGGGGGCGGCAAATTCAAAAAATGAGGTTAGAAAGCCTGAAAAATGAGTTTTACTAGGGAAAATACAAATATTTTTTCAAGTTTGTAGGTTTAACTT</canonical_amplicon>
		<polymorphic_amplicon>TCGCTATTTTCACACAATTTCACACTCAGAAACCCTCTGAAAACCCAATTTTCGATCCTAGAGTCATTTTTCTAGCAATTTTCCTAAAAAGTGCTCGGATGGTCTAGTGGGGTTTTCGACGAAAAGTTTGGATCTAGAGGTCGCGGGTTCGATTCCCACCGGTGGCAACTTCTTTTTAAAAAATGTTTTTGGGGGTTTTCAGGGGTGGGAATTTCAAAAATCTGGGTACGAAAGCTTGAAAATTTAGTTTGAACGATGAAAATAGGGATTTCGGTCAAAAAAAGATTACTAGGCAACTTTTCCAGTGATTTTYGGCTTTTTCACGCAATTTTACATTCGAAAACCTGTCTAAAATCTATATTTTTACCCGAAAATCATGTTTCTAACAATTTTCCAAAAATGTGCTCAGATGGCCTAGTGCGAATTTCAACGGAAAATTTGGATTTAGGGGTCTCTGGTTCGACTCCCACTGGTGGCAACTTCTCTTTGGAAGTGTTTTTAGGGGTTTTCGGGGGCGGCAAATTCAAAAAATGAGGTTAGAAAGCCTGAAAAATGAGTTTTACTAGGGAAAATACAAATATTTTTTCAAGTTTGTAGGTTTAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28960</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>106449</contig_pos>
        <strand></strand>
        <context>tttaaacgcc[T/C]gtatctcggc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTTAGAGTGTATCGCTGTCTGCGTCTCTCGCCTCCGAAGCTTTAAACGCC</left_flank>
        <right_flank>GTATCTCGGCTCCCAGATGAGCCAGGAATGTGGTTTTTTGACCAAAAATC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGCCTATCGAGTGCTCCAGCTTGACAACGCCGATTCAGTGTCAAGTGACATCGGAATCATCGGCACATTGTCATTGGACTAGGCATCATGACCCGATGCAGACTGTCATTGGCTACCGTATTCTTTTGAGCTCCCCGGTTAATCAGGACACCAATACGACTATCAATCAGCCGCAGTTACGGGAGGTCAGATATGAGAACTTGCAGCCCGGATATGTTTATACTGTAGAGGTGAGTAAAATTAGCAAAACTTTGAGCCTAACTTCAAATTTCTAGCGTTTCTGAGAGGCGAGGTAGTCACTTTTGAAAAAAAATTGTTTTCAATTTCGCTGACATTTTTAGCAAATCTAAAAATACAACTCAAGCCAATTATTTCTGTGAAATTTTGAGTTCCCTAGCACGTCTAGCAGCTGAGATATAGCGCTTTGAAGTTTGAAGAAACGCAGACAGTTAGAGTGTATCGCTGTCTGCGTCTCTCGCCTCCGAAGCTTTAAACGCCTGTATCTCGGCTCCCAGATGAGCCAGGAATGTGGTTTTTTGACCAAAAATCTTCACTTTCTATGTTTAATGTTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCATCACCAACAAAGGTCTGGGCCGTACCGTAAGCACTCAATTCGTGACTCATTCGGATTTCGAAACCAATGCGATTTCTCGATTCCCG</canonical>
            <polymorphic>ACGCCTATCGAGTGCTCCAGCTTGACAACGCCGATTCAGTGTCAAGTGACATCGGAATCATCGGCACATTGTCATTGGACTAGGCATCATGACCCGATGCAGACTGTCATTGGCTACCGTATTCTTTTGAGCTCCCCGGTTAATCAGGACACCAATACGACTATCAATCAGCCGCAGTTACGGGAGGTCAGATATGAGAACTTGCAGCCCGGATATGTTTATACTGTAGAGGTGAGTAAAATTAGCAAAACTTTGAGCCTAACTTCAAATTTCTAGCGTTTCTGAGAGGCGAGGTAGTCACTTTTGAAAAAAAATTGTTTTCAATTTCGCTGACATTTTTAGCAAATCTAAAAATACAACTCAAGCCAATTATTTCTGTGAAATTTTGAGTTCCCTAGCACGTCTAGCAGCTGAGATATAGCGCTTTGAAGTTTGAAGAAACGCAGACAGTTAGAGTGTATCGCTGTCTGCGTCTCTCGCCTCCGAAGCTTTAAACGCCYGTATCTCGGCTCCCAGATGAGCCAGGAATGTGGTTTTTTGACCAAAAATCTTCACTTTCTATGTTTAATGTTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCATCACCAACAAAGGTCTGGGCCGTACCGTAAGCACTCAATTCGTGACTCATTCGGATTTCGAAACCAATGCGATTTCTCGATTCCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCAAATCTAAAAATACAACTCAA</pcr_primer_p1>
		<pcr_primer_p2>TTTAACGGCTGATAACATTAAAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGCAAATCTAAAAATACAACTCAAGCCAATTATTTCTGTGAAATTTTGAGTTCCCTAGCACGTCTAGCAGCTGAGATATAGCGCTTTGAAGTTTGAAGAAACGCAGACAGTTAGAGTGTATCGCTGTCTGCGTCTCTCGCCTCCGAAGCTTTAAACGCCTGTATCTCGGCTCCCAGATGAGCCAGGAATGTGGTTTTTTGACCAAAAATCTTCACTTTCTATGTTTAATGTTATCAGCCGTTAAA</canonical_amplicon>
		<polymorphic_amplicon>AGCAAATCTAAAAATACAACTCAAGCCAATTATTTCTGTGAAATTTTGAGTTCCCTAGCACGTCTAGCAGCTGAGATATAGCGCTTTGAAGTTTGAAGAAACGCAGACAGTTAGAGTGTATCGCTGTCTGCGTCTCTCGCCTCCGAAGCTTTAAACGCCYGTATCTCGGCTCCCAGATGAGCCAGGAATGTGGTTTTTTGACCAAAAATCTTCACTTTCTATGTTTAATGTTATCAGCCGTTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28961</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>106498</contig_pos>
        <strand>+</strand>
        <context>tgacCAAAAA[G/T]CTTCACTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTGTATCTCGGCTCCCAGATGAGCCAGGAATGTGGTTTTTTGACCAAAAA</left_flank>
        <right_flank>CTTCACTTTCTATGTTTAATGTTATCAGCCGTTAAAATTAAGAATTTTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCGGAATCATCGGCACATTGTCATTGGACTAGGCATCATGACCCGATGCAGACTGTCATTGGCTACCGTATTCTTTTGAGCTCCCCGGTTAATCAGGACACCAATACGACTATCAATCAGCCGCAGTTACGGGAGGTCAGATATGAGAACTTGCAGCCCGGATATGTTTATACTGTAGAGGTGAGTAAAATTAGCAAAACTTTGAGCCTAACTTCAAATTTCTAGCGTTTCTGAGAGGCGAGGTAGTCACTTTTGAAAAAAAATTGTTTTCAATTTCGCTGACATTTTTAGCAAATCTAAAAATACAACTCAAGCCAATTATTTCTGTGAAATTTTGAGTTCCCTAGCACGTCTAGCAGCTGAGATATAGCGCTTTGAAGTTTGAAGAAACGCAGACAGTTAGAGTGTATCGCTGTCTGCGTCTCTCGCCTCCGAAGCTTTAAACGCCTGTATCTCGGCTCCCAGATGAGCCAGGAATGTGGTTTTTTGACCAAAAATCTTCACTTTCTATGTTTAATGTTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCATCACCAACAAAGGTCTGGGCCGTACCGTAAGCACTCAATTCGTGACTCATTCGGATTTCGAAACCAATGCGATTTCTCGATTCCCGGGAGGTGAAATTATCGAGCTGCCGCTGGAATCGTCTTCTGGAACATTCC</canonical>
            <polymorphic>CATCGGAATCATCGGCACATTGTCATTGGACTAGGCATCATGACCCGATGCAGACTGTCATTGGCTACCGTATTCTTTTGAGCTCCCCGGTTAATCAGGACACCAATACGACTATCAATCAGCCGCAGTTACGGGAGGTCAGATATGAGAACTTGCAGCCCGGATATGTTTATACTGTAGAGGTGAGTAAAATTAGCAAAACTTTGAGCCTAACTTCAAATTTCTAGCGTTTCTGAGAGGCGAGGTAGTCACTTTTGAAAAAAAATTGTTTTCAATTTCGCTGACATTTTTAGCAAATCTAAAAATACAACTCAAGCCAATTATTTCTGTGAAATTTTGAGTTCCCTAGCACGTCTAGCAGCTGAGATATAGCGCTTTGAAGTTTGAAGAAACGCAGACAGTTAGAGTGTATCGCTGTCTGCGTCTCTCGCCTCCGAAGCTTTAAACGCCTGTATCTCGGCTCCCAGATGAGCCAGGAATGTGGTTTTTTGACCAAAAAKCTTCACTTTCTATGTTTAATGTTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCATCACCAACAAAGGTCTGGGCCGTACCGTAAGCACTCAATTCGTGACTCATTCGGATTTCGAAACCAATGCGATTTCTCGATTCCCGGGAGGTGAAATTATCGAGCTGCCGCTGGAATCGTCTTCTGGAACATTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAAATCTAAAAATACAACTCAAG</pcr_primer_p1>
		<pcr_primer_p2>ATTGTCCGAAAAATTCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>GCAAATCTAAAAATACAACTCAAGCCAATTATTTCTGTGAAATTTTGAGTTCCCTAGCACGTCTAGCAGCTGAGATATAGCGCTTTGAAGTTTGAAGAAACGCAGACAGTTAGAGTGTATCGCTGTCTGCGTCTCTCGCCTCCGAAGCTTTAAACGCCTGTATCTCGGCTCCCAGATGAGCCAGGAATGTGGTTTTTTGACCAAAAATCTTCACTTTCTATGTTTAATGTTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAAT</canonical_amplicon>
		<polymorphic_amplicon>GCAAATCTAAAAATACAACTCAAGCCAATTATTTCTGTGAAATTTTGAGTTCCCTAGCACGTCTAGCAGCTGAGATATAGCGCTTTGAAGTTTGAAGAAACGCAGACAGTTAGAGTGTATCGCTGTCTGCGTCTCTCGCCTCCGAAGCTTTAAACGCCTGTATCTCGGCTCCCAGATGAGCCAGGAATGTGGTTTTTTGACCAAAAAKCTTCACTTTCTATGTTTAATGTTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28962</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>106580</contig_pos>
        <strand></strand>
        <context>ttcaaatttt[G/C]cgaaattaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTT</left_flank>
        <right_flank>CGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCCCGGTTAATCAGGACACCAATACGACTATCAATCAGCCGCAGTTACGGGAGGTCAGATATGAGAACTTGCAGCCCGGATATGTTTATACTGTAGAGGTGAGTAAAATTAGCAAAACTTTGAGCCTAACTTCAAATTTCTAGCGTTTCTGAGAGGCGAGGTAGTCACTTTTGAAAAAAAATTGTTTTCAATTTCGCTGACATTTTTAGCAAATCTAAAAATACAACTCAAGCCAATTATTTCTGTGAAATTTTGAGTTCCCTAGCACGTCTAGCAGCTGAGATATAGCGCTTTGAAGTTTGAAGAAACGCAGACAGTTAGAGTGTATCGCTGTCTGCGTCTCTCGCCTCCGAAGCTTTAAACGCCTGTATCTCGGCTCCCAGATGAGCCAGGAATGTGGTTTTTTGACCAAAAATCTTCACTTTCTATGTTTAATGTTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCATCACCAACAAAGGTCTGGGCCGTACCGTAAGCACTCAATTCGTGACTCATTCGGATTTCGAAACCAATGCGATTTCTCGATTCCCGGGAGGTGAAATTATCGAGCTGCCGCTGGAATCGTCTTCTGGAACATTCCTAAGAATAATGCCTTTGATTTTGATGCCCCTTCTTTTAAGGTTACTGTAATTTGATTACTGTACTTTATAGTTTGTAGTGTT</canonical>
            <polymorphic>CTCCCCGGTTAATCAGGACACCAATACGACTATCAATCAGCCGCAGTTACGGGAGGTCAGATATGAGAACTTGCAGCCCGGATATGTTTATACTGTAGAGGTGAGTAAAATTAGCAAAACTTTGAGCCTAACTTCAAATTTCTAGCGTTTCTGAGAGGCGAGGTAGTCACTTTTGAAAAAAAATTGTTTTCAATTTCGCTGACATTTTTAGCAAATCTAAAAATACAACTCAAGCCAATTATTTCTGTGAAATTTTGAGTTCCCTAGCACGTCTAGCAGCTGAGATATAGCGCTTTGAAGTTTGAAGAAACGCAGACAGTTAGAGTGTATCGCTGTCTGCGTCTCTCGCCTCCGAAGCTTTAAACGCCTGTATCTCGGCTCCCAGATGAGCCAGGAATGTGGTTTTTTGACCAAAAATCTTCACTTTCTATGTTTAATGTTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTSCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCATCACCAACAAAGGTCTGGGCCGTACCGTAAGCACTCAATTCGTGACTCATTCGGATTTCGAAACCAATGCGATTTCTCGATTCCCGGGAGGTGAAATTATCGAGCTGCCGCTGGAATCGTCTTCTGGAACATTCCTAAGAATAATGCCTTTGATTTTGATGCCCCTTCTTTTAAGGTTACTGTAATTTGATTACTGTACTTTATAGTTTGTAGTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATCAGCCGTTAAAATTAAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATGGATTGGACCTGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>345</pcr_amplicon_size>
		<canonical_amplicon>TTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCAT</canonical_amplicon>
		<polymorphic_amplicon>TTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTSCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28963</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>106640</contig_pos>
        <strand></strand>
        <context>aaattttggg[G/C]yttctagctt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGG</left_flank>
        <right_flank>TTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATGAGAACTTGCAGCCCGGATATGTTTATACTGTAGAGGTGAGTAAAATTAGCAAAACTTTGAGCCTAACTTCAAATTTCTAGCGTTTCTGAGAGGCGAGGTAGTCACTTTTGAAAAAAAATTGTTTTCAATTTCGCTGACATTTTTAGCAAATCTAAAAATACAACTCAAGCCAATTATTTCTGTGAAATTTTGAGTTCCCTAGCACGTCTAGCAGCTGAGATATAGCGCTTTGAAGTTTGAAGAAACGCAGACAGTTAGAGTGTATCGCTGTCTGCGTCTCTCGCCTCCGAAGCTTTAAACGCCTGTATCTCGGCTCCCAGATGAGCCAGGAATGTGGTTTTTTGACCAAAAATCTTCACTTTCTATGTTTAATGTTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCATCACCAACAAAGGTCTGGGCCGTACCGTAAGCACTCAATTCGTGACTCATTCGGATTTCGAAACCAATGCGATTTCTCGATTCCCGGGAGGTGAAATTATCGAGCTGCCGCTGGAATCGTCTTCTGGAACATTCCTAAGAATAATGCCTTTGATTTTGATGCCCCTTCTTTTAAGGTTACTGTAATTTGATTACTGTACTTTATAGTTTGTAGTGTTCTCTATTTTTTTTTCAATTCGTGTGATACGGGATTTTACGGGTATTATCTCTACTTGTGT</canonical>
            <polymorphic>ATATGAGAACTTGCAGCCCGGATATGTTTATACTGTAGAGGTGAGTAAAATTAGCAAAACTTTGAGCCTAACTTCAAATTTCTAGCGTTTCTGAGAGGCGAGGTAGTCACTTTTGAAAAAAAATTGTTTTCAATTTCGCTGACATTTTTAGCAAATCTAAAAATACAACTCAAGCCAATTATTTCTGTGAAATTTTGAGTTCCCTAGCACGTCTAGCAGCTGAGATATAGCGCTTTGAAGTTTGAAGAAACGCAGACAGTTAGAGTGTATCGCTGTCTGCGTCTCTCGCCTCCGAAGCTTTAAACGCCTGTATCTCGGCTCCCAGATGAGCCAGGAATGTGGTTTTTTGACCAAAAATCTTCACTTTCTATGTTTAATGTTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGSTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCATCACCAACAAAGGTCTGGGCCGTACCGTAAGCACTCAATTCGTGACTCATTCGGATTTCGAAACCAATGCGATTTCTCGATTCCCGGGAGGTGAAATTATCGAGCTGCCGCTGGAATCGTCTTCTGGAACATTCCTAAGAATAATGCCTTTGATTTTGATGCCCCTTCTTTTAAGGTTACTGTAATTTGATTACTGTACTTTATAGTTTGTAGTGTTCTCTATTTTTTTTTCAATTCGTGTGATACGGGATTTTACGGGTATTATCTCTACTTGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATCAGCCGTTAAAATTAAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATGGATTGGACCTGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>345</pcr_amplicon_size>
		<canonical_amplicon>TTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCAT</canonical_amplicon>
		<polymorphic_amplicon>TTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGSTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28964</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>106641</contig_pos>
        <strand></strand>
        <context>aattttgggs[T/C]ttctagctta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGG</left_flank>
        <right_flank>TTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGAGAACTTGCAGCCCGGATATGTTTATACTGTAGAGGTGAGTAAAATTAGCAAAACTTTGAGCCTAACTTCAAATTTCTAGCGTTTCTGAGAGGCGAGGTAGTCACTTTTGAAAAAAAATTGTTTTCAATTTCGCTGACATTTTTAGCAAATCTAAAAATACAACTCAAGCCAATTATTTCTGTGAAATTTTGAGTTCCCTAGCACGTCTAGCAGCTGAGATATAGCGCTTTGAAGTTTGAAGAAACGCAGACAGTTAGAGTGTATCGCTGTCTGCGTCTCTCGCCTCCGAAGCTTTAAACGCCTGTATCTCGGCTCCCAGATGAGCCAGGAATGTGGTTTTTTGACCAAAAATCTTCACTTTCTATGTTTAATGTTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCATCACCAACAAAGGTCTGGGCCGTACCGTAAGCACTCAATTCGTGACTCATTCGGATTTCGAAACCAATGCGATTTCTCGATTCCCGGGAGGTGAAATTATCGAGCTGCCGCTGGAATCGTCTTCTGGAACATTCCTAAGAATAATGCCTTTGATTTTGATGCCCCTTCTTTTAAGGTTACTGTAATTTGATTACTGTACTTTATAGTTTGTAGTGTTCTCTATTTTTTTTTCAATTCGTGTGATACGGGATTTTACGGGTATTATCTCTACTTGTGTG</canonical>
            <polymorphic>TATGAGAACTTGCAGCCCGGATATGTTTATACTGTAGAGGTGAGTAAAATTAGCAAAACTTTGAGCCTAACTTCAAATTTCTAGCGTTTCTGAGAGGCGAGGTAGTCACTTTTGAAAAAAAATTGTTTTCAATTTCGCTGACATTTTTAGCAAATCTAAAAATACAACTCAAGCCAATTATTTCTGTGAAATTTTGAGTTCCCTAGCACGTCTAGCAGCTGAGATATAGCGCTTTGAAGTTTGAAGAAACGCAGACAGTTAGAGTGTATCGCTGTCTGCGTCTCTCGCCTCCGAAGCTTTAAACGCCTGTATCTCGGCTCCCAGATGAGCCAGGAATGTGGTTTTTTGACCAAAAATCTTCACTTTCTATGTTTAATGTTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGYTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCATCACCAACAAAGGTCTGGGCCGTACCGTAAGCACTCAATTCGTGACTCATTCGGATTTCGAAACCAATGCGATTTCTCGATTCCCGGGAGGTGAAATTATCGAGCTGCCGCTGGAATCGTCTTCTGGAACATTCCTAAGAATAATGCCTTTGATTTTGATGCCCCTTCTTTTAAGGTTACTGTAATTTGATTACTGTACTTTATAGTTTGTAGTGTTCTCTATTTTTTTTTCAATTCGTGTGATACGGGATTTTACGGGTATTATCTCTACTTGTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATCAGCCGTTAAAATTAAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATGGATTGGACCTGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>345</pcr_amplicon_size>
		<canonical_amplicon>TTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCAT</canonical_amplicon>
		<polymorphic_amplicon>TTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGYTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28965</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>106663</contig_pos>
        <strand></strand>
        <context>ctgggagcta[A/C]gatacagcgc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTA</left_flank>
        <right_flank>GATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTTTATACTGTAGAGGTGAGTAAAATTAGCAAAACTTTGAGCCTAACTTCAAATTTCTAGCGTTTCTGAGAGGCGAGGTAGTCACTTTTGAAAAAAAATTGTTTTCAATTTCGCTGACATTTTTAGCAAATCTAAAAATACAACTCAAGCCAATTATTTCTGTGAAATTTTGAGTTCCCTAGCACGTCTAGCAGCTGAGATATAGCGCTTTGAAGTTTGAAGAAACGCAGACAGTTAGAGTGTATCGCTGTCTGCGTCTCTCGCCTCCGAAGCTTTAAACGCCTGTATCTCGGCTCCCAGATGAGCCAGGAATGTGGTTTTTTGACCAAAAATCTTCACTTTCTATGTTTAATGTTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCATCACCAACAAAGGTCTGGGCCGTACCGTAAGCACTCAATTCGTGACTCATTCGGATTTCGAAACCAATGCGATTTCTCGATTCCCGGGAGGTGAAATTATCGAGCTGCCGCTGGAATCGTCTTCTGGAACATTCCTAAGAATAATGCCTTTGATTTTGATGCCCCTTCTTTTAAGGTTACTGTAATTTGATTACTGTACTTTATAGTTTGTAGTGTTCTCTATTTTTTTTTCAATTCGTGTGATACGGGATTTTACGGGTATTATCTCTACTTGTGTGAAATCATTTTTTGAAAATTGAA</canonical>
            <polymorphic>ATGTTTATACTGTAGAGGTGAGTAAAATTAGCAAAACTTTGAGCCTAACTTCAAATTTCTAGCGTTTCTGAGAGGCGAGGTAGTCACTTTTGAAAAAAAATTGTTTTCAATTTCGCTGACATTTTTAGCAAATCTAAAAATACAACTCAAGCCAATTATTTCTGTGAAATTTTGAGTTCCCTAGCACGTCTAGCAGCTGAGATATAGCGCTTTGAAGTTTGAAGAAACGCAGACAGTTAGAGTGTATCGCTGTCTGCGTCTCTCGCCTCCGAAGCTTTAAACGCCTGTATCTCGGCTCCCAGATGAGCCAGGAATGTGGTTTTTTGACCAAAAATCTTCACTTTCTATGTTTAATGTTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAMGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCATCACCAACAAAGGTCTGGGCCGTACCGTAAGCACTCAATTCGTGACTCATTCGGATTTCGAAACCAATGCGATTTCTCGATTCCCGGGAGGTGAAATTATCGAGCTGCCGCTGGAATCGTCTTCTGGAACATTCCTAAGAATAATGCCTTTGATTTTGATGCCCCTTCTTTTAAGGTTACTGTAATTTGATTACTGTACTTTATAGTTTGTAGTGTTCTCTATTTTTTTTTCAATTCGTGTGATACGGGATTTTACGGGTATTATCTCTACTTGTGTGAAATCATTTTTTGAAAATTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>300 242 165 129 96 68</canonical_bands>
                <polymorphic_bands>396 242 165 129 68</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATCAGCCGTTAAAATTAAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATGGATTGGACCTGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>345</pcr_amplicon_size>
		<canonical_amplicon>TTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCAT</canonical_amplicon>
		<polymorphic_amplicon>TTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAMGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28966</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>106779</contig_pos>
        <strand>+</strand>
        <context>tgagctagaa[C/G]cctgattttt</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAA</left_flank>
        <right_flank>CCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACATTTTTAGCAAATCTAAAAATACAACTCAAGCCAATTATTTCTGTGAAATTTTGAGTTCCCTAGCACGTCTAGCAGCTGAGATATAGCGCTTTGAAGTTTGAAGAAACGCAGACAGTTAGAGTGTATCGCTGTCTGCGTCTCTCGCCTCCGAAGCTTTAAACGCCTGTATCTCGGCTCCCAGATGAGCCAGGAATGTGGTTTTTTGACCAAAAATCTTCACTTTCTATGTTTAATGTTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCATCACCAACAAAGGTCTGGGCCGTACCGTAAGCACTCAATTCGTGACTCATTCGGATTTCGAAACCAATGCGATTTCTCGATTCCCGGGAGGTGAAATTATCGAGCTGCCGCTGGAATCGTCTTCTGGAACATTCCTAAGAATAATGCCTTTGATTTTGATGCCCCTTCTTTTAAGGTTACTGTAATTTGATTACTGTACTTTATAGTTTGTAGTGTTCTCTATTTTTTTTTCAATTCGTGTGATACGGGATTTTACGGGTATTATCTCTACTTGTGTGAAATCATTTTTTGAAAATTGAATAAATTTTATAAAAATATGTTTTTTTGGATTTTTTGAAAGATCTGCAATTTCAAATATACTCTTTTTTTCCAGAATTACAGACAGCAATTTGAATATTTAATATGGTTTATTTATA</canonical>
            <polymorphic>TGACATTTTTAGCAAATCTAAAAATACAACTCAAGCCAATTATTTCTGTGAAATTTTGAGTTCCCTAGCACGTCTAGCAGCTGAGATATAGCGCTTTGAAGTTTGAAGAAACGCAGACAGTTAGAGTGTATCGCTGTCTGCGTCTCTCGCCTCCGAAGCTTTAAACGCCTGTATCTCGGCTCCCAGATGAGCCAGGAATGTGGTTTTTTGACCAAAAATCTTCACTTTCTATGTTTAATGTTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAASCCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCATCACCAACAAAGGTCTGGGCCGTACCGTAAGCACTCAATTCGTGACTCATTCGGATTTCGAAACCAATGCGATTTCTCGATTCCCGGGAGGTGAAATTATCGAGCTGCCGCTGGAATCGTCTTCTGGAACATTCCTAAGAATAATGCCTTTGATTTTGATGCCCCTTCTTTTAAGGTTACTGTAATTTGATTACTGTACTTTATAGTTTGTAGTGTTCTCTATTTTTTTTTCAATTCGTGTGATACGGGATTTTACGGGTATTATCTCTACTTGTGTGAAATCATTTTTTGAAAATTGAATAAATTTTATAAAAATATGTTTTTTTGGATTTTTTGAAAGATCTGCAATTTCAAATATACTCTTTTTTTCCAGAATTACAGACAGCAATTTGAATATTTAATATGGTTTATTTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATCAGCCGTTAAAATTAAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATGGATTGGACCTGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>345</pcr_amplicon_size>
		<canonical_amplicon>TTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCAT</canonical_amplicon>
		<polymorphic_amplicon>TTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAASCCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28967</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>106800</contig_pos>
        <strand></strand>
        <context>ccacagaTCG[C/T]TTTYATTTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCG</left_flank>
        <right_flank>TTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATACAACTCAAGCCAATTATTTCTGTGAAATTTTGAGTTCCCTAGCACGTCTAGCAGCTGAGATATAGCGCTTTGAAGTTTGAAGAAACGCAGACAGTTAGAGTGTATCGCTGTCTGCGTCTCTCGCCTCCGAAGCTTTAAACGCCTGTATCTCGGCTCCCAGATGAGCCAGGAATGTGGTTTTTTGACCAAAAATCTTCACTTTCTATGTTTAATGTTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCATCACCAACAAAGGTCTGGGCCGTACCGTAAGCACTCAATTCGTGACTCATTCGGATTTCGAAACCAATGCGATTTCTCGATTCCCGGGAGGTGAAATTATCGAGCTGCCGCTGGAATCGTCTTCTGGAACATTCCTAAGAATAATGCCTTTGATTTTGATGCCCCTTCTTTTAAGGTTACTGTAATTTGATTACTGTACTTTATAGTTTGTAGTGTTCTCTATTTTTTTTTCAATTCGTGTGATACGGGATTTTACGGGTATTATCTCTACTTGTGTGAAATCATTTTTTGAAAATTGAATAAATTTTATAAAAATATGTTTTTTTGGATTTTTTGAAAGATCTGCAATTTCAAATATACTCTTTTTTTCCAGAATTACAGACAGCAATTTGAATATTTAATATGGTTTATTTATACATTTTACAAAAATACAATAA</canonical>
            <polymorphic>AAATACAACTCAAGCCAATTATTTCTGTGAAATTTTGAGTTCCCTAGCACGTCTAGCAGCTGAGATATAGCGCTTTGAAGTTTGAAGAAACGCAGACAGTTAGAGTGTATCGCTGTCTGCGTCTCTCGCCTCCGAAGCTTTAAACGCCTGTATCTCGGCTCCCAGATGAGCCAGGAATGTGGTTTTTTGACCAAAAATCTTCACTTTCTATGTTTAATGTTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGYTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCATCACCAACAAAGGTCTGGGCCGTACCGTAAGCACTCAATTCGTGACTCATTCGGATTTCGAAACCAATGCGATTTCTCGATTCCCGGGAGGTGAAATTATCGAGCTGCCGCTGGAATCGTCTTCTGGAACATTCCTAAGAATAATGCCTTTGATTTTGATGCCCCTTCTTTTAAGGTTACTGTAATTTGATTACTGTACTTTATAGTTTGTAGTGTTCTCTATTTTTTTTTCAATTCGTGTGATACGGGATTTTACGGGTATTATCTCTACTTGTGTGAAATCATTTTTTGAAAATTGAATAAATTTTATAAAAATATGTTTTTTTGGATTTTTTGAAAGATCTGCAATTTCAAATATACTCTTTTTTTCCAGAATTACAGACAGCAATTTGAATATTTAATATGGTTTATTTATACATTTTACAAAAATACAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATCAGCCGTTAAAATTAAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATGGATTGGACCTGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>345</pcr_amplicon_size>
		<canonical_amplicon>TTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCAT</canonical_amplicon>
		<polymorphic_amplicon>TTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGYTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28968</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>106804</contig_pos>
        <strand></strand>
        <context>agaTCGYTTT[C/T]ATTTTAASCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTT</left_flank>
        <right_flank>ATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAACTCAAGCCAATTATTTCTGTGAAATTTTGAGTTCCCTAGCACGTCTAGCAGCTGAGATATAGCGCTTTGAAGTTTGAAGAAACGCAGACAGTTAGAGTGTATCGCTGTCTGCGTCTCTCGCCTCCGAAGCTTTAAACGCCTGTATCTCGGCTCCCAGATGAGCCAGGAATGTGGTTTTTTGACCAAAAATCTTCACTTTCTATGTTTAATGTTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCATCACCAACAAAGGTCTGGGCCGTACCGTAAGCACTCAATTCGTGACTCATTCGGATTTCGAAACCAATGCGATTTCTCGATTCCCGGGAGGTGAAATTATCGAGCTGCCGCTGGAATCGTCTTCTGGAACATTCCTAAGAATAATGCCTTTGATTTTGATGCCCCTTCTTTTAAGGTTACTGTAATTTGATTACTGTACTTTATAGTTTGTAGTGTTCTCTATTTTTTTTTCAATTCGTGTGATACGGGATTTTACGGGTATTATCTCTACTTGTGTGAAATCATTTTTTGAAAATTGAATAAATTTTATAAAAATATGTTTTTTTGGATTTTTTGAAAGATCTGCAATTTCAAATATACTCTTTTTTTCCAGAATTACAGACAGCAATTTGAATATTTAATATGGTTTATTTATACATTTTACAAAAATACAATAATTAT</canonical>
            <polymorphic>ACAACTCAAGCCAATTATTTCTGTGAAATTTTGAGTTCCCTAGCACGTCTAGCAGCTGAGATATAGCGCTTTGAAGTTTGAAGAAACGCAGACAGTTAGAGTGTATCGCTGTCTGCGTCTCTCGCCTCCGAAGCTTTAAACGCCTGTATCTCGGCTCCCAGATGAGCCAGGAATGTGGTTTTTTGACCAAAAATCTTCACTTTCTATGTTTAATGTTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTYATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCATCACCAACAAAGGTCTGGGCCGTACCGTAAGCACTCAATTCGTGACTCATTCGGATTTCGAAACCAATGCGATTTCTCGATTCCCGGGAGGTGAAATTATCGAGCTGCCGCTGGAATCGTCTTCTGGAACATTCCTAAGAATAATGCCTTTGATTTTGATGCCCCTTCTTTTAAGGTTACTGTAATTTGATTACTGTACTTTATAGTTTGTAGTGTTCTCTATTTTTTTTTCAATTCGTGTGATACGGGATTTTACGGGTATTATCTCTACTTGTGTGAAATCATTTTTTGAAAATTGAATAAATTTTATAAAAATATGTTTTTTTGGATTTTTTGAAAGATCTGCAATTTCAAATATACTCTTTTTTTCCAGAATTACAGACAGCAATTTGAATATTTAATATGGTTTATTTATACATTTTACAAAAATACAATAATTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATCAGCCGTTAAAATTAAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATGGATTGGACCTGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>345</pcr_amplicon_size>
		<canonical_amplicon>TTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCAT</canonical_amplicon>
		<polymorphic_amplicon>TTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTYATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28969</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>106812</contig_pos>
        <strand></strand>
        <context>TTYATTTTAA[C/G]CGTCTTTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAA</left_flank>
        <right_flank>CGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCCAATTATTTCTGTGAAATTTTGAGTTCCCTAGCACGTCTAGCAGCTGAGATATAGCGCTTTGAAGTTTGAAGAAACGCAGACAGTTAGAGTGTATCGCTGTCTGCGTCTCTCGCCTCCGAAGCTTTAAACGCCTGTATCTCGGCTCCCAGATGAGCCAGGAATGTGGTTTTTTGACCAAAAATCTTCACTTTCTATGTTTAATGTTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCATCACCAACAAAGGTCTGGGCCGTACCGTAAGCACTCAATTCGTGACTCATTCGGATTTCGAAACCAATGCGATTTCTCGATTCCCGGGAGGTGAAATTATCGAGCTGCCGCTGGAATCGTCTTCTGGAACATTCCTAAGAATAATGCCTTTGATTTTGATGCCCCTTCTTTTAAGGTTACTGTAATTTGATTACTGTACTTTATAGTTTGTAGTGTTCTCTATTTTTTTTTCAATTCGTGTGATACGGGATTTTACGGGTATTATCTCTACTTGTGTGAAATCATTTTTTGAAAATTGAATAAATTTTATAAAAATATGTTTTTTTGGATTTTTTGAAAGATCTGCAATTTCAAATATACTCTTTTTTTCCAGAATTACAGACAGCAATTTGAATATTTAATATGGTTTATTTATACATTTTACAAAAATACAATAATTATACAAAATA</canonical>
            <polymorphic>AGCCAATTATTTCTGTGAAATTTTGAGTTCCCTAGCACGTCTAGCAGCTGAGATATAGCGCTTTGAAGTTTGAAGAAACGCAGACAGTTAGAGTGTATCGCTGTCTGCGTCTCTCGCCTCCGAAGCTTTAAACGCCTGTATCTCGGCTCCCAGATGAGCCAGGAATGTGGTTTTTTGACCAAAAATCTTCACTTTCTATGTTTAATGTTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAASCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCATCACCAACAAAGGTCTGGGCCGTACCGTAAGCACTCAATTCGTGACTCATTCGGATTTCGAAACCAATGCGATTTCTCGATTCCCGGGAGGTGAAATTATCGAGCTGCCGCTGGAATCGTCTTCTGGAACATTCCTAAGAATAATGCCTTTGATTTTGATGCCCCTTCTTTTAAGGTTACTGTAATTTGATTACTGTACTTTATAGTTTGTAGTGTTCTCTATTTTTTTTTCAATTCGTGTGATACGGGATTTTACGGGTATTATCTCTACTTGTGTGAAATCATTTTTTGAAAATTGAATAAATTTTATAAAAATATGTTTTTTTGGATTTTTTGAAAGATCTGCAATTTCAAATATACTCTTTTTTTCCAGAATTACAGACAGCAATTTGAATATTTAATATGGTTTATTTATACATTTTACAAAAATACAATAATTATACAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>323 254 155 92 86 76 14</canonical_bands>
                <polymorphic_bands>323 254 168 155 86 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATCAGCCGTTAAAATTAAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATGGATTGGACCTGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>345</pcr_amplicon_size>
		<canonical_amplicon>TTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCAT</canonical_amplicon>
		<polymorphic_amplicon>TTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAASCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28970</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>106843</contig_pos>
        <strand>+</strand>
        <context>AAAAATTACC[A/G]AATTTTTCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACC</left_flank>
        <right_flank>AATTTTTCAGGTCCAATCCATCACCAACAAAGGTCTGGGCCGTACCGTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAGCACGTCTAGCAGCTGAGATATAGCGCTTTGAAGTTTGAAGAAACGCAGACAGTTAGAGTGTATCGCTGTCTGCGTCTCTCGCCTCCGAAGCTTTAAACGCCTGTATCTCGGCTCCCAGATGAGCCAGGAATGTGGTTTTTTGACCAAAAATCTTCACTTTCTATGTTTAATGTTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCATCACCAACAAAGGTCTGGGCCGTACCGTAAGCACTCAATTCGTGACTCATTCGGATTTCGAAACCAATGCGATTTCTCGATTCCCGGGAGGTGAAATTATCGAGCTGCCGCTGGAATCGTCTTCTGGAACATTCCTAAGAATAATGCCTTTGATTTTGATGCCCCTTCTTTTAAGGTTACTGTAATTTGATTACTGTACTTTATAGTTTGTAGTGTTCTCTATTTTTTTTTCAATTCGTGTGATACGGGATTTTACGGGTATTATCTCTACTTGTGTGAAATCATTTTTTGAAAATTGAATAAATTTTATAAAAATATGTTTTTTTGGATTTTTTGAAAGATCTGCAATTTCAAATATACTCTTTTTTTCCAGAATTACAGACAGCAATTTGAATATTTAATATGGTTTATTTATACATTTTACAAAAATACAATAATTATACAAAATAATACAAAAAGTACTGTAATCCTTTTTTTTTC</canonical>
            <polymorphic>CTAGCACGTCTAGCAGCTGAGATATAGCGCTTTGAAGTTTGAAGAAACGCAGACAGTTAGAGTGTATCGCTGTCTGCGTCTCTCGCCTCCGAAGCTTTAAACGCCTGTATCTCGGCTCCCAGATGAGCCAGGAATGTGGTTTTTTGACCAAAAATCTTCACTTTCTATGTTTAATGTTATCAGCCGTTAAAATTAAGAATTTTGAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCRAATTTTTCAGGTCCAATCCATCACCAACAAAGGTCTGGGCCGTACCGTAAGCACTCAATTCGTGACTCATTCGGATTTCGAAACCAATGCGATTTCTCGATTCCCGGGAGGTGAAATTATCGAGCTGCCGCTGGAATCGTCTTCTGGAACATTCCTAAGAATAATGCCTTTGATTTTGATGCCCCTTCTTTTAAGGTTACTGTAATTTGATTACTGTACTTTATAGTTTGTAGTGTTCTCTATTTTTTTTTCAATTCGTGTGATACGGGATTTTACGGGTATTATCTCTACTTGTGTGAAATCATTTTTTGAAAATTGAATAAATTTTATAAAAATATGTTTTTTTGGATTTTTTGAAAGATCTGCAATTTCAAATATACTCTTTTTTTCCAGAATTACAGACAGCAATTTGAATATTTAATATGGTTTATTTATACATTTTACAAAAATACAATAATTATACAAAATAATACAAAAAGTACTGTAATCCTTTTTTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>322 213 197 178 57 26 7</canonical_bands>
                <polymorphic_bands>535 197 178 57 26 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTTTTCGGACAATTTTTATT</pcr_primer_p1>
		<pcr_primer_p2>AGTCACGAATTGAGTGCTTAC</pcr_primer_p2>
		<pcr_amplicon_size>364</pcr_amplicon_size>
		<canonical_amplicon>GAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCAAATTTTTCAGGTCCAATCCATCACCAACAAAGGTCTGGGCCGTACCGTAAGCACTCAATTCGTGACT</canonical_amplicon>
		<polymorphic_amplicon>GAATTTTTCGGACAATTTTTATTTTCAAATTTTGCGAAATTAAAAAAAATCTAAAAATACATTCAAACCCAACTAGTTCTGTAAAATTTTGGGGTTTCTAGCTTATCTGGGAGCTAAGATACAGCGCTTCAAAGTTTTGAAGGTGAGACGACGCAGACGACGAGACTCCCTAACTGTCTGCGTCTCTCCAAAACTTCAAATAGCTGTATCTCAGCTCCCAGATGAGCTAGAAACCTGATTTTTCCACAGATCGCTTTCATTTTAACCGTCTTTTTCAATTTAAATTAAAAATTACCRAATTTTTCAGGTCCAATCCATCACCAACAAAGGTCTGGGCCGTACCGTAAGCACTCAATTCGTGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28971</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>123042</contig_pos>
        <strand></strand>
        <context>aacggaatTT[C/T]GAGAACATTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATCGCCCTCACAAGTTCAACTCCTCGAGAGGCATTTTTGAACGGAATTT</left_flank>
        <right_flank>GAGAACATTATTTTTTTCATGTCCCCCCCCCCTTTAATTTCCAAATCATG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGCCTAACATTCTTATCCGTGGCCTAGAAATCCCATTTTTCTGTATTTTGAAATCCTGGCCTAACTTCCTGATCCATGGCCTAGAGACCCCACTTTTCTTCGTTTTGAAATTATGGTCTAACTTTTTATATGGCCTAGAAATGCCAAATTTCTTGAAATTTCGAATCATGGCCTAACTTTCCTATTCATGGCCTAGAAATCCCACTTATTTGAAATTTTGGCCTAACTTTTATGGCCTGGAAACCCTACTTTCCTTTAATTTAAAATCATGGACTAACATTCTCATCCATGGCCTAGAAATCCCATTTTTCTGAATTTTGAAATCATGGCCTAAAATTATCATCCGTGACCTAGAAACCCCACTTTCCTTAATTTTGTAATCATGACCTAACTTTCTGTTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGAGGCATTTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCCCCCTTTAATTTCCAAATCATGGCCTAGAAATGATGGCTTAACTTTCTCAAAATTTTTTTTCAAAACTCAATTTTTTCCAGATGACCGTATCCTATAATCTCGACGTCTCATCAGTCTCCTTCTTCAACTTTTTTCGGGTATGAAAATGTTTTGTAGTCTTTGTAGTATGTAGTCTCTAACTTTCAGGTTCTATTCAGATGGCGTGGGTCCGTCTGGAAATCGATATGGTCCGAATTAATGATTTGGCTGATTTTCTATTATATGGTTATGGTCACCTATAGATTCGCATTGGATTCAGAGAAACGAGAGTACGGTAGTTTTTGGTGGCCTAGAATTTTTTCTAGGCTACCAAGCTCAAAATTTTTAAAAATTTTATTTGGTTTTAGGGAGGTTCGAAAATATATCGAAAATTTGCACGAAAATTTGGACAATTGCGTTCCGCTGACTTTTATGCTCGCATTTTTTGTTACA</canonical>
            <polymorphic>TGGCCTAACATTCTTATCCGTGGCCTAGAAATCCCATTTTTCTGTATTTTGAAATCCTGGCCTAACTTCCTGATCCATGGCCTAGAGACCCCACTTTTCTTCGTTTTGAAATTATGGTCTAACTTTTTATATGGCCTAGAAATGCCAAATTTCTTGAAATTTCGAATCATGGCCTAACTTTCCTATTCATGGCCTAGAAATCCCACTTATTTGAAATTTTGGCCTAACTTTTATGGCCTGGAAACCCTACTTTCCTTTAATTTAAAATCATGGACTAACATTCTCATCCATGGCCTAGAAATCCCATTTTTCTGAATTTTGAAATCATGGCCTAAAATTATCATCCGTGACCTAGAAACCCCACTTTCCTTAATTTTGTAATCATGACCTAACTTTCTGTTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGAGGCATTTTTGAACGGAATTTYGAGAACATTATTTTTTTCATGTCCCCCCCCCCTTTAATTTCCAAATCATGGCCTAGAAATGATGGCTTAACTTTCTCAAAATTTTTTTTCAAAACTCAATTTTTTCCAGATGACCGTATCCTATAATCTCGACGTCTCATCAGTCTCCTTCTTCAACTTTTTTCGGGTATGAAAATGTTTTGTAGTCTTTGTAGTATGTAGTCTCTAACTTTCAGGTTCTATTCAGATGGCGTGGGTCCGTCTGGAAATCGATATGGTCCGAATTAATGATTTGGCTGATTTTCTATTATATGGTTATGGTCACCTATAGATTCGCATTGGATTCAGAGAAACGAGAGTACGGTAGTTTTTGGTGGCCTAGAATTTTTTCTAGGCTACCAAGCTCAAAATTTTTAAAAATTTTATTTGGTTTTAGGGAGGTTCGAAAATATATCGAAAATTTGCACGAAAATTTGGACAATTGCGTTCCGCTGACTTTTATGCTCGCATTTTTTGTTACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>312 173 163 130 120 66 25 11</canonical_bands>
                <polymorphic_bands>312 173 163 155 120 66 11</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>258 230 114 106 92 84 69 25 22</canonical_bands>
                <polymorphic_bands>258 230 131 114 92 84 69 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAAAATTATCATCCGTGACCTA</pcr_primer_p1>
		<pcr_primer_p2>TTTGAGAAAGTTAAGCCATCAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTAAAATTATCATCCGTGACCTAGAAACCCCACTTTCCTTAATTTTGTAATCATGACCTAACTTTCTGTTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGAGGCATTTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCCCCCTTTAATTTCCAAATCATGGCCTAGAAATGATGGCTTAACTTTCTCAAA</canonical_amplicon>
		<polymorphic_amplicon>CTAAAATTATCATCCGTGACCTAGAAACCCCACTTTCCTTAATTTTGTAATCATGACCTAACTTTCTGTTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGAGGCATTTTTGAACGGAATTTYGAGAACATTATTTTTTTCATGTCCCCCCCCCCTTTAATTTCCAAATCATGGCCTAGAAATGATGGCTTAACTTTCTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28972</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>138745</contig_pos>
        <strand></strand>
        <context>tcaataaatt[G/A]ATAAATTKTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GCTTCTAAGTTAGAACTTTTGTGCCATATCCTTCTTCTGGTCAATAAATT</left_flank>
        <right_flank>ATAAATTTTCCAATCTTAGAGACTTGGTTTCTTCACAGAATTTATTAATT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTCTAACAGAAACCCTTTATTTCTGTCAAAGTTTGAGCTTCCTAGCTTATCTAGAAACCAAGATACATCGCTTTGAAGTTTTGAAGAGACGCAGACAGTCAGAGTGTTTAGCTGTCTACACTCTCCTCTCTCCCCATACTCTCGCTTTCAAAACTTCAAATCGCTGTATCTCAGCTTCTAGATGAGCTAGAAACTTGGTTCTTGGACTAAACTGTTCCTTTGAACTTGTTTTTCTGGAAAAATGAAAAATCAAAATTCGAAAAATTCTTGAGCTTTTTCAAAATATTTTTCTATTTTTTAATTTTGTCGATTCTCTGACAGAAAAACCTACATTTCTGTCGAAGTTTGAGCATTCTAGCTCATCTAGAAGCCAAGATAAATCACTTTTAAGTTTGAGAGACGCAGACAGTTAGAGTGTCTTGTATCTCGTGAGGGATTCTATCTAGAGCTTCTAAGTTAGAACTTTTGTGCCATATCCTTCTTCTGGTCAATAAATTGATAAATTTTCCAATCTTAGAGACTTGGTTTCTTCACAGAATTTATTAATTTTGAATCCTTTAAATACTCAAACGATTGAAAAAATCTCAAAAAAATTATTTTCCAGTCCGCCGTCGGCGACAAGTGTGCGATGAGATTCAACGTGGCCACCAGAGACCAAGCGGACGCTGATGAGTTCTGTCAGCTTTATGCTCCATGGAGATTTGAGAAAGCGGTCAGAGAAGACGCGGGAAGACCTACAGTAACCTGTCATGTCGGTAAGCATGATCTAATAACGATTTATTGATTTATCGATTTTCCTGTTTTGCAGAAGCCACATTCACATGTCGAACCGGTTGGATGCAGATGTTTGGGTATTGTTTCAGAATGCCTGATAAGAATTTGGTGGCAAATTTCACGGATGCTCAGGATATTTGCGCTAAGGAACATGGAGTAATCGCGTATATGCATCATCGATACATTGTTGGAGTTTGGAAAAGTTAGTGATTTTGAGTTTTGAT</canonical>
            <polymorphic>TTCTCTAACAGAAACCCTTTATTTCTGTCAAAGTTTGAGCTTCCTAGCTTATCTAGAAACCAAGATACATCGCTTTGAAGTTTTGAAGAGACGCAGACAGTCAGAGTGTTTAGCTGTCTACACTCTCCTCTCTCCCCATACTCTCGCTTTCAAAACTTCAAATCGCTGTATCTCAGCTTCTAGATGAGCTAGAAACTTGGTTCTTGGACTAAACTGTTCCTTTGAACTTGTTTTTCTGGAAAAATGAAAAATCAAAATTCGAAAAATTCTTGAGCTTTTTCAAAATATTTTTCTATTTTTTAATTTTGTCGATTCTCTGACAGAAAAACCTACATTTCTGTCGAAGTTTGAGCATTCTAGCTCATCTAGAAGCCAAGATAAATCACTTTTAAGTTTGAGAGACGCAGACAGTTAGAGTGTCTTGTATCTCGTGAGGGATTCTATCTAGAGCTTCTAAGTTAGAACTTTTGTGCCATATCCTTCTTCTGGTCAATAAATTRATAAATTTTCCAATCTTAGAGACTTGGTTTCTTCACAGAATTTATTAATTTTGAATCCTTTAAATACTCAAACGATTGAAAAAATCTCAAAAAAATTATTTTCCAGTCCGCCGTCGGCGACAAGTGTGCGATGAGATTCAACGTGGCCACCAGAGACCAAGCGGACGCTGATGAGTTCTGTCAGCTTTATGCTCCATGGAGATTTGAGAAAGCGGTCAGAGAAGACGCGGGAAGACCTACAGTAACCTGTCATGTCGGTAAGCATGATCTAATAACGATTTATTGATTTATCGATTTTCCTGTTTTGCAGAAGCCACATTCACATGTCGAACCGGTTGGATGCAGATGTTTGGGTATTGTTTCAGAATGCCTGATAAGAATTTGGTGGCAAATTTCACGGATGCTCAGGATATTTGCGCTAAGGAACATGGAGTAATCGCGTATATGCATCATCGATACATTGTTGGAGTTTGGAAAAGTTAGTGATTTTGAGTTTTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAATTTTGTCGATTCTCTGAC</pcr_primer_p1>
		<pcr_primer_p2>AATCTCATCGCACACTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>340</pcr_amplicon_size>
		<canonical_amplicon>TTTAATTTTGTCGATTCTCTGACAGAAAAACCTACATTTCTGTCGAAGTTTGAGCATTCTAGCTCATCTAGAAGCCAAGATAAATCACTTTTAAGTTTGAGAGACGCAGACAGTTAGAGTGTCTTGTATCTCGTGAGGGATTCTATCTAGAGCTTCTAAGTTAGAACTTTTGTGCCATATCCTTCTTCTGGTCAATAAATTGATAAATTTTCCAATCTTAGAGACTTGGTTTCTTCACAGAATTTATTAATTTTGAATCCTTTAAATACTCAAACGATTGAAAAAATCTCAAAAAAATTATTTTCCAGTCCGCCGTCGGCGACAAGTGTGCGATGAGATT</canonical_amplicon>
		<polymorphic_amplicon>TTTAATTTTGTCGATTCTCTGACAGAAAAACCTACATTTCTGTCGAAGTTTGAGCATTCTAGCTCATCTAGAAGCCAAGATAAATCACTTTTAAGTTTGAGAGACGCAGACAGTTAGAGTGTCTTGTATCTCGTGAGGGATTCTATCTAGAGCTTCTAAGTTAGAACTTTTGTGCCATATCCTTCTTCTGGTCAATAAATTRATAAATTTTCCAATCTTAGAGACTTGGTTTCTTCACAGAATTTATTAATTTTGAATCCTTTAAATACTCAAACGATTGAAAAAATCTCAAAAAAATTATTTTCCAGTCCGCCGTCGGCGACAAGTGTGCGATGAGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28973</snp_id>
        <super_contig>c004200143.Contig2</super_contig>
        <contig_pos>138753</contig_pos>
        <strand></strand>
        <context>ttRATAAATT[T/G]TCCAATCTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GTTAGAACTTTTGTGCCATATCCTTCTTCTGGTCAATAAATTGATAAATT</left_flank>
        <right_flank>TCCAATCTTAGAGACTTGGTTTCTTCACAGAATTTATTAATTTTGAATCC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAAACCCTTTATTTCTGTCAAAGTTTGAGCTTCCTAGCTTATCTAGAAACCAAGATACATCGCTTTGAAGTTTTGAAGAGACGCAGACAGTCAGAGTGTTTAGCTGTCTACACTCTCCTCTCTCCCCATACTCTCGCTTTCAAAACTTCAAATCGCTGTATCTCAGCTTCTAGATGAGCTAGAAACTTGGTTCTTGGACTAAACTGTTCCTTTGAACTTGTTTTTCTGGAAAAATGAAAAATCAAAATTCGAAAAATTCTTGAGCTTTTTCAAAATATTTTTCTATTTTTTAATTTTGTCGATTCTCTGACAGAAAAACCTACATTTCTGTCGAAGTTTGAGCATTCTAGCTCATCTAGAAGCCAAGATAAATCACTTTTAAGTTTGAGAGACGCAGACAGTTAGAGTGTCTTGTATCTCGTGAGGGATTCTATCTAGAGCTTCTAAGTTAGAACTTTTGTGCCATATCCTTCTTCTGGTCAATAAATTGATAAATTTTCCAATCTTAGAGACTTGGTTTCTTCACAGAATTTATTAATTTTGAATCCTTTAAATACTCAAACGATTGAAAAAATCTCAAAAAAATTATTTTCCAGTCCGCCGTCGGCGACAAGTGTGCGATGAGATTCAACGTGGCCACCAGAGACCAAGCGGACGCTGATGAGTTCTGTCAGCTTTATGCTCCATGGAGATTTGAGAAAGCGGTCAGAGAAGACGCGGGAAGACCTACAGTAACCTGTCATGTCGGTAAGCATGATCTAATAACGATTTATTGATTTATCGATTTTCCTGTTTTGCAGAAGCCACATTCACATGTCGAACCGGTTGGATGCAGATGTTTGGGTATTGTTTCAGAATGCCTGATAAGAATTTGGTGGCAAATTTCACGGATGCTCAGGATATTTGCGCTAAGGAACATGGAGTAATCGCGTATATGCATCATCGATACATTGTTGGAGTTTGGAAAAGTTAGTGATTTTGAGTTTTGATGAAAATCT</canonical>
            <polymorphic>CAGAAACCCTTTATTTCTGTCAAAGTTTGAGCTTCCTAGCTTATCTAGAAACCAAGATACATCGCTTTGAAGTTTTGAAGAGACGCAGACAGTCAGAGTGTTTAGCTGTCTACACTCTCCTCTCTCCCCATACTCTCGCTTTCAAAACTTCAAATCGCTGTATCTCAGCTTCTAGATGAGCTAGAAACTTGGTTCTTGGACTAAACTGTTCCTTTGAACTTGTTTTTCTGGAAAAATGAAAAATCAAAATTCGAAAAATTCTTGAGCTTTTTCAAAATATTTTTCTATTTTTTAATTTTGTCGATTCTCTGACAGAAAAACCTACATTTCTGTCGAAGTTTGAGCATTCTAGCTCATCTAGAAGCCAAGATAAATCACTTTTAAGTTTGAGAGACGCAGACAGTTAGAGTGTCTTGTATCTCGTGAGGGATTCTATCTAGAGCTTCTAAGTTAGAACTTTTGTGCCATATCCTTCTTCTGGTCAATAAATTGATAAATTKTCCAATCTTAGAGACTTGGTTTCTTCACAGAATTTATTAATTTTGAATCCTTTAAATACTCAAACGATTGAAAAAATCTCAAAAAAATTATTTTCCAGTCCGCCGTCGGCGACAAGTGTGCGATGAGATTCAACGTGGCCACCAGAGACCAAGCGGACGCTGATGAGTTCTGTCAGCTTTATGCTCCATGGAGATTTGAGAAAGCGGTCAGAGAAGACGCGGGAAGACCTACAGTAACCTGTCATGTCGGTAAGCATGATCTAATAACGATTTATTGATTTATCGATTTTCCTGTTTTGCAGAAGCCACATTCACATGTCGAACCGGTTGGATGCAGATGTTTGGGTATTGTTTCAGAATGCCTGATAAGAATTTGGTGGCAAATTTCACGGATGCTCAGGATATTTGCGCTAAGGAACATGGAGTAATCGCGTATATGCATCATCGATACATTGTTGGAGTTTGGAAAAGTTAGTGATTTTGAGTTTTGATGAAAATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>340 247 239 118 35 12 9</canonical_bands>
                <polymorphic_bands>340 274 247 118 12 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAATTTTGTCGATTCTCTGAC</pcr_primer_p1>
		<pcr_primer_p2>AATCTCATCGCACACTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>340</pcr_amplicon_size>
		<canonical_amplicon>TTTAATTTTGTCGATTCTCTGACAGAAAAACCTACATTTCTGTCGAAGTTTGAGCATTCTAGCTCATCTAGAAGCCAAGATAAATCACTTTTAAGTTTGAGAGACGCAGACAGTTAGAGTGTCTTGTATCTCGTGAGGGATTCTATCTAGAGCTTCTAAGTTAGAACTTTTGTGCCATATCCTTCTTCTGGTCAATAAATTGATAAATTTTCCAATCTTAGAGACTTGGTTTCTTCACAGAATTTATTAATTTTGAATCCTTTAAATACTCAAACGATTGAAAAAATCTCAAAAAAATTATTTTCCAGTCCGCCGTCGGCGACAAGTGTGCGATGAGATT</canonical_amplicon>
		<polymorphic_amplicon>TTTAATTTTGTCGATTCTCTGACAGAAAAACCTACATTTCTGTCGAAGTTTGAGCATTCTAGCTCATCTAGAAGCCAAGATAAATCACTTTTAAGTTTGAGAGACGCAGACAGTTAGAGTGTCTTGTATCTCGTGAGGGATTCTATCTAGAGCTTCTAAGTTAGAACTTTTGTGCCATATCCTTCTTCTGGTCAATAAATTGATAAATTKTCCAATCTTAGAGACTTGGTTTCTTCACAGAATTTATTAATTTTGAATCCTTTAAATACTCAAACGATTGAAAAAATCTCAAAAAAATTATTTTCCAGTCCGCCGTCGGCGACAAGTGTGCGATGAGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28974</snp_id>
        <super_contig>c004200526.Contig3</super_contig>
        <contig_pos>1069</contig_pos>
        <strand></strand>
        <context>CTTTCTTCTT[G/A]CATAAATCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GCACTAAAAACTTTTAGTTATTATTTTCTGAAATATCAATCTTTCTTCTT</left_flank>
        <right_flank>CATAAATCAAAATCTGAAAACTGAAACTTCAAAATGCATGATTTCTGATT</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAACAGGGGAGAGAAAATGACAACAAATTCAAGAAAATTAACAAAAAAAGCTTGTGTTCATGCATCAAAATCTTCAAGTCTCGCCTGTGTCGAATCGATCTTTTTCTTTGAGAATCATCAACTTTTCCAGCATTTTTAAGTCCAGGCTCTGACGAAACTGCAATCATATGCTACTTACAAACCAAAGTCACCCAAAAGTTTAAAACTTGGGGTAATATGGTATGCTAGAACTCTTTTTAAACAATTATTTTAAAAAATCCATTCTCACTTCTTTTCGTTCAAATACGTCATGAAATCAAATCAATTTTATTCTTATCAGTGTTGAAATTTCCCGTTTTCCTTGCTAACTCTTAAATTGTTTGTCTCTTCTCTTTTCAGTTTTCTTTTTTTTTCAATTTCAAAAGACCTCATTTTCATCTTATCAATTCAAGAATTATCAGAAAACTGGGCACTAAAAACTTTTAGTTATTATTTTCTGAAATATCAATCTTTCTTCTTGCATAAATCAAAATCTGAAAACTGAAACTTCAAAATGCATGATTTCTGATTTAAAAATTTACCTGTGATTCTCAAAAACTGTCTCAAAGTATCTAATTTTGAACTTTTTTTGAATAAGTTGTGCACAAAAATTGCTAATCACTGAATTTCTTATCACTCCCTTCCCCCACTTTTTGGTTACACAGTTCTCTTTCTACTTTCTACGTTTAACATTGATATTATCAGTTTCGCTCTTTTTCATATATATTTTTTCTCAATTTTCAGCTTTTCCAGAAAACATTTTTTTTCAGATGACTGAAAGAGAATTCACTCTGAAACATATATTCACTGATGTTGAGAAATTCGAGAAATATCAACGTCTCTGTAGTCCACGAGAAGACCATTTTGGTATCGGATGGTAGGTCTTATTGCTCATTTTTTAAATTATATTTGTATGTCAATTCAATTGCAGGTATATATGTATTAAAAAAGAGGACGAACACCTCGGAATGTATTTATACA</canonical>
            <polymorphic>ATAACAGGGGAGAGAAAATGACAACAAATTCAAGAAAATTAACAAAAAAAGCTTGTGTTCATGCATCAAAATCTTCAAGTCTCGCCTGTGTCGAATCGATCTTTTTCTTTGAGAATCATCAACTTTTCCAGCATTTTTAAGTCCAGGCTCTGACGAAACTGCAATCATATGCTACTTACAAACCAAAGTCACCCAAAAGTTTAAAACTTGGGGTAATATGGTATGCTAGAACTCTTTTTAAACAATTATTTTAAAAAATCCATTCTCACTTCTTTTCGTTCAAATACGTCATGAAATCAAATCAATTTTATTCTTATCAGTGTTGAAATTTCCCGTTTTCCTTGCTAACTCTTAAATTGTTTGTCTCTTCTCTTTTCAGTTTTCTTTTTTTTTCAATTTCAAAAGACCTCATTTTCATCTTATCAATTCAAGAATTATCAGAAAACTGGGCACTAAAAACTTTTAGTTATTATTTTCTGAAATATCAATCTTTCTTCTTRCATAAATCAAAATCTGAAAACTGAAACTTCAAAATGCATGATTTCTGATTTAAAAATTTACCTGTGATTCTCAAAAACTGTCTCAAAGTATCTAATTTTGAACTTTTTTTGAATAAGTTGTGCACAAAAATTGCTAATCACTGAATTTCTTATCACTCCCTTCCCCCACTTTTTGGTTACACAGTTCTCTTTCTACTTTCTACGTTTAACATTGATATTATCAGTTTCGCTCTTTTTCATATATATTTTTTCTCAATTTTCAGCTTTTCCAGAAAACATTTTTTTTCAGATGACTGAAAGAGAATTCACTCTGAAACATATATTCACTGATGTTGAGAAATTCGAGAAATATCAACGTCTCTGTAGTCCACGAGAAGACCATTTTGGTATCGGATGGTAGGTCTTATTGCTCATTTTTTAAATTATATTTGTATGTCAATTCAATTGCAGGTATATATGTATTAAAAAAGAGGACGAACACCTCGGAATGTATTTATACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>339 325 98 86 63 53 36</canonical_bands>
                <polymorphic_bands>375 325 98 86 63 53</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGACCTCATTTTCATCTTA</pcr_primer_p1>
		<pcr_primer_p2>AATTCAGTGATTAGCAATTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGACCTCATTTTCATCTTATCAATTCAAGAATTATCAGAAAACTGGGCACTAAAAACTTTTAGTTATTATTTTCTGAAATATCAATCTTTCTTCTTGCATAAATCAAAATCTGAAAACTGAAACTTCAAAATGCATGATTTCTGATTTAAAAATTTACCTGTGATTCTCAAAAACTGTCTCAAAGTATCTAATTTTGAACTTTTTTTGAATAAGTTGTGCACAAAAATTGCTAATCACTGAATT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGACCTCATTTTCATCTTATCAATTCAAGAATTATCAGAAAACTGGGCACTAAAAACTTTTAGTTATTATTTTCTGAAATATCAATCTTTCTTCTTRCATAAATCAAAATCTGAAAACTGAAACTTCAAAATGCATGATTTCTGATTTAAAAATTTACCTGTGATTCTCAAAAACTGTCTCAAAGTATCTAATTTTGAACTTTTTTTGAATAAGTTGTGCACAAAAATTGCTAATCACTGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28975</snp_id>
        <super_contig>c004200526.Contig3</super_contig>
        <contig_pos>1084</contig_pos>
        <strand></strand>
        <context>AATCAAAATC[T/G]GAAAACTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AGTTATTATTTTCTGAAATATCAATCTTTCTTCTTGCATAAATCAAAATC</left_flank>
        <right_flank>GAAAACTGAAACTTCAAAATGCATGATTTCTGATTTAAAAATTTACCTGT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGACAACAAATTCAAGAAAATTAACAAAAAAAGCTTGTGTTCATGCATCAAAATCTTCAAGTCTCGCCTGTGTCGAATCGATCTTTTTCTTTGAGAATCATCAACTTTTCCAGCATTTTTAAGTCCAGGCTCTGACGAAACTGCAATCATATGCTACTTACAAACCAAAGTCACCCAAAAGTTTAAAACTTGGGGTAATATGGTATGCTAGAACTCTTTTTAAACAATTATTTTAAAAAATCCATTCTCACTTCTTTTCGTTCAAATACGTCATGAAATCAAATCAATTTTATTCTTATCAGTGTTGAAATTTCCCGTTTTCCTTGCTAACTCTTAAATTGTTTGTCTCTTCTCTTTTCAGTTTTCTTTTTTTTTCAATTTCAAAAGACCTCATTTTCATCTTATCAATTCAAGAATTATCAGAAAACTGGGCACTAAAAACTTTTAGTTATTATTTTCTGAAATATCAATCTTTCTTCTTGCATAAATCAAAATCTGAAAACTGAAACTTCAAAATGCATGATTTCTGATTTAAAAATTTACCTGTGATTCTCAAAAACTGTCTCAAAGTATCTAATTTTGAACTTTTTTTGAATAAGTTGTGCACAAAAATTGCTAATCACTGAATTTCTTATCACTCCCTTCCCCCACTTTTTGGTTACACAGTTCTCTTTCTACTTTCTACGTTTAACATTGATATTATCAGTTTCGCTCTTTTTCATATATATTTTTTCTCAATTTTCAGCTTTTCCAGAAAACATTTTTTTTCAGATGACTGAAAGAGAATTCACTCTGAAACATATATTCACTGATGTTGAGAAATTCGAGAAATATCAACGTCTCTGTAGTCCACGAGAAGACCATTTTGGTATCGGATGGTAGGTCTTATTGCTCATTTTTTAAATTATATTTGTATGTCAATTCAATTGCAGGTATATATGTATTAAAAAAGAGGACGAACACCTCGGAATGTATTTATACACAAATGTGACGGGAA</canonical>
            <polymorphic>AAATGACAACAAATTCAAGAAAATTAACAAAAAAAGCTTGTGTTCATGCATCAAAATCTTCAAGTCTCGCCTGTGTCGAATCGATCTTTTTCTTTGAGAATCATCAACTTTTCCAGCATTTTTAAGTCCAGGCTCTGACGAAACTGCAATCATATGCTACTTACAAACCAAAGTCACCCAAAAGTTTAAAACTTGGGGTAATATGGTATGCTAGAACTCTTTTTAAACAATTATTTTAAAAAATCCATTCTCACTTCTTTTCGTTCAAATACGTCATGAAATCAAATCAATTTTATTCTTATCAGTGTTGAAATTTCCCGTTTTCCTTGCTAACTCTTAAATTGTTTGTCTCTTCTCTTTTCAGTTTTCTTTTTTTTTCAATTTCAAAAGACCTCATTTTCATCTTATCAATTCAAGAATTATCAGAAAACTGGGCACTAAAAACTTTTAGTTATTATTTTCTGAAATATCAATCTTTCTTCTTGCATAAATCAAAATCKGAAAACTGAAACTTCAAAATGCATGATTTCTGATTTAAAAATTTACCTGTGATTCTCAAAAACTGTCTCAAAGTATCTAATTTTGAACTTTTTTTGAATAAGTTGTGCACAAAAATTGCTAATCACTGAATTTCTTATCACTCCCTTCCCCCACTTTTTGGTTACACAGTTCTCTTTCTACTTTCTACGTTTAACATTGATATTATCAGTTTCGCTCTTTTTCATATATATTTTTTCTCAATTTTCAGCTTTTCCAGAAAACATTTTTTTTCAGATGACTGAAAGAGAATTCACTCTGAAACATATATTCACTGATGTTGAGAAATTCGAGAAATATCAACGTCTCTGTAGTCCACGAGAAGACCATTTTGGTATCGGATGGTAGGTCTTATTGCTCATTTTTTAAATTATATTTGTATGTCAATTCAATTGCAGGTATATATGTATTAAAAAAGAGGACGAACACCTCGGAATGTATTTATACACAAATGTGACGGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGACCTCATTTTCATCTTA</pcr_primer_p1>
		<pcr_primer_p2>AATTCAGTGATTAGCAATTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGACCTCATTTTCATCTTATCAATTCAAGAATTATCAGAAAACTGGGCACTAAAAACTTTTAGTTATTATTTTCTGAAATATCAATCTTTCTTCTTGCATAAATCAAAATCTGAAAACTGAAACTTCAAAATGCATGATTTCTGATTTAAAAATTTACCTGTGATTCTCAAAAACTGTCTCAAAGTATCTAATTTTGAACTTTTTTTGAATAAGTTGTGCACAAAAATTGCTAATCACTGAATT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGACCTCATTTTCATCTTATCAATTCAAGAATTATCAGAAAACTGGGCACTAAAAACTTTTAGTTATTATTTTCTGAAATATCAATCTTTCTTCTTGCATAAATCAAAATCKGAAAACTGAAACTTCAAAATGCATGATTTCTGATTTAAAAATTTACCTGTGATTCTCAAAAACTGTCTCAAAGTATCTAATTTTGAACTTTTTTTGAATAAGTTGTGCACAAAAATTGCTAATCACTGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28976</snp_id>
        <super_contig>c004200526.Contig3</super_contig>
        <contig_pos>1280</contig_pos>
        <strand></strand>
        <context>TACGTTTAAC[A/G]TTGATATTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCCCCACTTTTTGGTTACACAGTTCTCTTTCTACTTTCTACGTTTAAC</left_flank>
        <right_flank>TTGATATTATCAGTTTCGCTCTTTTTCATATATATTTTTTCTCAATTTTC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTAATATGGTATGCTAGAACTCTTTTTAAACAATTATTTTAAAAAATCCATTCTCACTTCTTTTCGTTCAAATACGTCATGAAATCAAATCAATTTTATTCTTATCAGTGTTGAAATTTCCCGTTTTCCTTGCTAACTCTTAAATTGTTTGTCTCTTCTCTTTTCAGTTTTCTTTTTTTTTCAATTTCAAAAGACCTCATTTTCATCTTATCAATTCAAGAATTATCAGAAAACTGGGCACTAAAAACTTTTAGTTATTATTTTCTGAAATATCAATCTTTCTTCTTGCATAAATCAAAATCTGAAAACTGAAACTTCAAAATGCATGATTTCTGATTTAAAAATTTACCTGTGATTCTCAAAAACTGTCTCAAAGTATCTAATTTTGAACTTTTTTTGAATAAGTTGTGCACAAAAATTGCTAATCACTGAATTTCTTATCACTCCCTTCCCCCACTTTTTGGTTACACAGTTCTCTTTCTACTTTCTACGTTTAACATTGATATTATCAGTTTCGCTCTTTTTCATATATATTTTTTCTCAATTTTCAGCTTTTCCAGAAAACATTTTTTTTCAGATGACTGAAAGAGAATTCACTCTGAAACATATATTCACTGATGTTGAGAAATTCGAGAAATATCAACGTCTCTGTAGTCCACGAGAAGACCATTTTGGTATCGGATGGTAGGTCTTATTGCTCATTTTTTAAATTATATTTGTATGTCAATTCAATTGCAGGTATATATGTATTAAAAAAGAGGACGAACACCTCGGAATGTATTTATACACAAATGTGACGGGAAATCAAGAAATTCACACTAATTTTATCCTGAGAATATTCTCGAAAAACAAGGAAAAAACTCATTCACAGTCTTGTAGTAAATTATTCAAAAATAATGGGAACGACTGGGATAATTGGGGTTGGCTCAAATTCATTGAATGGAGAACTTTGGAAGATGAATATCTTGATGATGGAAAATTGGAAGTGGAAATTCATGT</canonical>
            <polymorphic>GGTAATATGGTATGCTAGAACTCTTTTTAAACAATTATTTTAAAAAATCCATTCTCACTTCTTTTCGTTCAAATACGTCATGAAATCAAATCAATTTTATTCTTATCAGTGTTGAAATTTCCCGTTTTCCTTGCTAACTCTTAAATTGTTTGTCTCTTCTCTTTTCAGTTTTCTTTTTTTTTCAATTTCAAAAGACCTCATTTTCATCTTATCAATTCAAGAATTATCAGAAAACTGGGCACTAAAAACTTTTAGTTATTATTTTCTGAAATATCAATCTTTCTTCTTGCATAAATCAAAATCTGAAAACTGAAACTTCAAAATGCATGATTTCTGATTTAAAAATTTACCTGTGATTCTCAAAAACTGTCTCAAAGTATCTAATTTTGAACTTTTTTTGAATAAGTTGTGCACAAAAATTGCTAATCACTGAATTTCTTATCACTCCCTTCCCCCACTTTTTGGTTACACAGTTCTCTTTCTACTTTCTACGTTTAACRTTGATATTATCAGTTTCGCTCTTTTTCATATATATTTTTTCTCAATTTTCAGCTTTTCCAGAAAACATTTTTTTTCAGATGACTGAAAGAGAATTCACTCTGAAACATATATTCACTGATGTTGAGAAATTCGAGAAATATCAACGTCTCTGTAGTCCACGAGAAGACCATTTTGGTATCGGATGGTAGGTCTTATTGCTCATTTTTTAAATTATATTTGTATGTCAATTCAATTGCAGGTATATATGTATTAAAAAAGAGGACGAACACCTCGGAATGTATTTATACACAAATGTGACGGGAAATCAAGAAATTCACACTAATTTTATCCTGAGAATATTCTCGAAAAACAAGGAAAAAACTCATTCACAGTCTTGTAGTAAATTATTCAAAAATAATGGGAACGACTGGGATAATTGGGGTTGGCTCAAATTCATTGAATGGAGAACTTTGGAAGATGAATATCTTGATGATGGAAAATTGGAAGTGGAAATTCATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTGATTCTCAAAAACTGTCTC</pcr_primer_p1>
		<pcr_primer_p2>GAGTGAATTCTCTTTCAGTCATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGTGATTCTCAAAAACTGTCTCAAAGTATCTAATTTTGAACTTTTTTTGAATAAGTTGTGCACAAAAATTGCTAATCACTGAATTTCTTATCACTCCCTTCCCCCACTTTTTGGTTACACAGTTCTCTTTCTACTTTCTACGTTTAACATTGATATTATCAGTTTCGCTCTTTTTCATATATATTTTTTCTCAATTTTCAGCTTTTCCAGAAAACATTTTTTTTCAGATGACTGAAAGAGAATTCACTC</canonical_amplicon>
		<polymorphic_amplicon>CTGTGATTCTCAAAAACTGTCTCAAAGTATCTAATTTTGAACTTTTTTTGAATAAGTTGTGCACAAAAATTGCTAATCACTGAATTTCTTATCACTCCCTTCCCCCACTTTTTGGTTACACAGTTCTCTTTCTACTTTCTACGTTTAACRTTGATATTATCAGTTTCGCTCTTTTTCATATATATTTTTTCTCAATTTTCAGCTTTTCCAGAAAACATTTTTTTTCAGATGACTGAAAGAGAATTCACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28977</snp_id>
        <super_contig>c004300781.Contig3</super_contig>
        <contig_pos>1588</contig_pos>
        <strand></strand>
        <context>TACAAATTTG[A/C]ASTTTTTTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTGGATTTTCCGAAAATTCGATTTTTTTCCGAAAATTTTACAAATTTG</left_flank>
        <right_flank>ACTTTTTTGGATTTGGTTGGAAACTGATCAAATTTTTCAGAAAAATTCAA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATCGGCTGGGTCGGTGGTCGGTCGGCGGTCGGCGATTTTCGACCGACCGAAATGGAAGCCTTACTGAAAATTTGGCCGACGATATATCAGTGGGTGTAAAAATTAGATAAGGGTCCCCCTTTATGTGCTTTTCAAGTTCAAAAAGTATCAAAAAATATCAGGGGCTGTTTGTTTGGAATTTTTTGAAAATCGATCAAAGTTGTTAGATTTTCCAAAAAAATGGATTATTAAATTCTCAGAAAATTCGAATTCTCGAAATTTCAACAGAACAATCGAAAAAATCAGAAATTTTGAGAGTAAATTCCCTATAAAAGTGGGCGGAGCCTAAATTGCAGATTGCTATTGTAGGCTCCGCCCCTGACTCCGCCCACTTATTTTCCTTAAAATTTCAGAAATTTTATGAAAATTTCGGTTTTTTTTTGGGATTTTTGAGGAAAATTTTAAAATTTTGGATTTTCCGAAAATTCGATTTTTTTCCGAAAATTTTACAAATTTGAACTTTTTTGGATTTGGTTGGAAACTGATCAAATTTTTCAGAAAAATTCAACATTTTCAGAGGAAAACTTTTGTGAAGAAAAATTGGTTGGAAAAGTGGGCGGAGTCAGGGGTCGGAGCCTGAATTGCAAGATTTTCAAAATTTTCCTGCGAAAATCTCAAAATTTTGAATTTACTGAAAACTGAGGTTAAAAAATAACTCGAGAAAAATTGTATTTTAAATAGCGAAAAAATTCGAAATCTGGAAATTCGGGTTTTCCTCGAAAATGGCCGAATTTTGAATTTTTTGAATAATTTTCAGTTTTTTTTTGAATTTTTTGAATATTCGACAGCACTTCTTTCAATTTTTAAACAATTTTTTTGCGAAAAATTTCAAATTTTTGTACCTTCCCACCACTCGAAACCTCATCATCCACCACAATTTTCACATTTTTCGTTTTTCTCGAAAGTTCGTCTTCTTCTTTTTCTTGACAAATTTCTTGTGGCGTCGCTCCCGACTCGC</canonical>
            <polymorphic>GAAATCGGCTGGGTCGGTGGTCGGTCGGCGGTCGGCGATTTTCGACCGACCGAAATGGAAGCCTTACTGAAAATTTGGCCGACGATATATCAGTGGGTGTAAAAATTAGATAAGGGTCCCCCTTTATGTGCTTTTCAAGTTCAAAAAGTATCAAAAAATATCAGGGGCTGTTTGTTTGGAATTTTTTGAAAATCGATCAAAGTTGTTAGATTTTCCAAAAAAATGGATTATTAAATTCTCAGAAAATTCGAATTCTCGAAATTTCAACAGAACAATCGAAAAAATCAGAAATTTTGAGAGTAAATTCCCTATAAAAGTGGGCGGAGCCTAAATTGCAGATTGCTATTGTAGGCTCCGCCCCTGACTCCGCCCACTTATTTTCCTTAAAATTTCAGAAATTTTATGAAAATTTCGGTTTTTTTTTGGGATTTTTGAGGAAAATTTTAAAATTTTGGATTTTCCGAAAATTCGATTTTTTTCCGAAAATTTTACAAATTTGMACTTTTTTGGATTTGGTTGGAAACTGATCAAATTTTTCAGAAAAATTCAACATTTTCAGAGGAAAACTTTTGTGAAGAAAAATTGGTTGGAAAAGTGGGCGGAGTCAGGGGTCGGAGCCTGAATTGCAAGATTTTCAAAATTTTCCTGCGAAAATCTCAAAATTTTGAATTTACTGAAAACTGAGGTTAAAAAATAACTCGAGAAAAATTGTATTTTAAATAGCGAAAAAATTCGAAATCTGGAAATTCGGGTTTTCCTCGAAAATGGCCGAATTTTGAATTTTTTGAATAATTTTCAGTTTTTTTTTGAATTTTTTGAATATTCGACAGCACTTCTTTCAATTTTTAAACAATTTTTTTGCGAAAAATTTCAAATTTTTGTACCTTCCCACCACTCGAAACCTCATCATCCACCACAATTTTCACATTTTTCGTTTTTCTCGAAAGTTCGTCTTCTTCTTTTTCTTGACAAATTTCTTGTGGCGTCGCTCCCGACTCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCAGAAATTTTGAGAGTAAATTC</pcr_primer_p1>
		<pcr_primer_p2>ACCTCAGTTTTCAGTAAATTCAA</pcr_primer_p2>
		<pcr_amplicon_size>405</pcr_amplicon_size>
		<canonical_amplicon>AATCAGAAATTTTGAGAGTAAATTCCCTATAAAAGTGGGCGGAGCCTAAATTGCAGATTGCTATTGTAGGCTCCGCCCCTGACTCCGCCCACTTATTTTCCTTAAAATTTCAGAAATTTTATGAAAATTTCGGTTTTTTTTTGGGATTTTTGAGGAAAATTTTAAAATTTTGGATTTTCCGAAAATTCGATTTTTTTCCGAAAATTTTACAAATTTGAACTTTTTTGGATTTGGTTGGAAACTGATCAAATTTTTCAGAAAAATTCAACATTTTCAGAGGAAAACTTTTGTGAAGAAAAATTGGTTGGAAAAGTGGGCGGAGTCAGGGGTCGGAGCCTGAATTGCAAGATTTTCAAAATTTTCCTGCGAAAATCTCAAAATTTTGAATTTACTGAAAACTGAGGT</canonical_amplicon>
		<polymorphic_amplicon>AATCAGAAATTTTGAGAGTAAATTCCCTATAAAAGTGGGCGGAGCCTAAATTGCAGATTGCTATTGTAGGCTCCGCCCCTGACTCCGCCCACTTATTTTCCTTAAAATTTCAGAAATTTTATGAAAATTTCGGTTTTTTTTTGGGATTTTTGAGGAAAATTTTAAAATTTTGGATTTTCCGAAAATTCGATTTTTTTCCGAAAATTTTACAAATTTGMACTTTTTTGGATTTGGTTGGAAACTGATCAAATTTTTCAGAAAAATTCAACATTTTCAGAGGAAAACTTTTGTGAAGAAAAATTGGTTGGAAAAGTGGGCGGAGTCAGGGGTCGGAGCCTGAATTGCAAGATTTTCAAAATTTTCCTGCGAAAATCTCAAAATTTTGAATTTACTGAAAACTGAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28978</snp_id>
        <super_contig>c004300781.Contig3</super_contig>
        <contig_pos>1590</contig_pos>
        <strand></strand>
        <context>CAAATTTGMA[C/G]TTTTTTGGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTGGATTTTCCGAAAATTCGATTTTTTTCCGAAAATTTTACAAATTTGAA</left_flank>
        <right_flank>TTTTTTGGATTTGGTTGGAAACTGATCAAATTTTTCAGAAAAATTCAACA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCGGCTGGGTCGGTGGTCGGTCGGCGGTCGGCGATTTTCGACCGACCGAAATGGAAGCCTTACTGAAAATTTGGCCGACGATATATCAGTGGGTGTAAAAATTAGATAAGGGTCCCCCTTTATGTGCTTTTCAAGTTCAAAAAGTATCAAAAAATATCAGGGGCTGTTTGTTTGGAATTTTTTGAAAATCGATCAAAGTTGTTAGATTTTCCAAAAAAATGGATTATTAAATTCTCAGAAAATTCGAATTCTCGAAATTTCAACAGAACAATCGAAAAAATCAGAAATTTTGAGAGTAAATTCCCTATAAAAGTGGGCGGAGCCTAAATTGCAGATTGCTATTGTAGGCTCCGCCCCTGACTCCGCCCACTTATTTTCCTTAAAATTTCAGAAATTTTATGAAAATTTCGGTTTTTTTTTGGGATTTTTGAGGAAAATTTTAAAATTTTGGATTTTCCGAAAATTCGATTTTTTTCCGAAAATTTTACAAATTTGAACTTTTTTGGATTTGGTTGGAAACTGATCAAATTTTTCAGAAAAATTCAACATTTTCAGAGGAAAACTTTTGTGAAGAAAAATTGGTTGGAAAAGTGGGCGGAGTCAGGGGTCGGAGCCTGAATTGCAAGATTTTCAAAATTTTCCTGCGAAAATCTCAAAATTTTGAATTTACTGAAAACTGAGGTTAAAAAATAACTCGAGAAAAATTGTATTTTAAATAGCGAAAAAATTCGAAATCTGGAAATTCGGGTTTTCCTCGAAAATGGCCGAATTTTGAATTTTTTGAATAATTTTCAGTTTTTTTTTGAATTTTTTGAATATTCGACAGCACTTCTTTCAATTTTTAAACAATTTTTTTGCGAAAAATTTCAAATTTTTGTACCTTCCCACCACTCGAAACCTCATCATCCACCACAATTTTCACATTTTTCGTTTTTCTCGAAAGTTCGTCTTCTTCTTTTTCTTGACAAATTTCTTGTGGCGTCGCTCCCGACTCGCCG</canonical>
            <polymorphic>AATCGGCTGGGTCGGTGGTCGGTCGGCGGTCGGCGATTTTCGACCGACCGAAATGGAAGCCTTACTGAAAATTTGGCCGACGATATATCAGTGGGTGTAAAAATTAGATAAGGGTCCCCCTTTATGTGCTTTTCAAGTTCAAAAAGTATCAAAAAATATCAGGGGCTGTTTGTTTGGAATTTTTTGAAAATCGATCAAAGTTGTTAGATTTTCCAAAAAAATGGATTATTAAATTCTCAGAAAATTCGAATTCTCGAAATTTCAACAGAACAATCGAAAAAATCAGAAATTTTGAGAGTAAATTCCCTATAAAAGTGGGCGGAGCCTAAATTGCAGATTGCTATTGTAGGCTCCGCCCCTGACTCCGCCCACTTATTTTCCTTAAAATTTCAGAAATTTTATGAAAATTTCGGTTTTTTTTTGGGATTTTTGAGGAAAATTTTAAAATTTTGGATTTTCCGAAAATTCGATTTTTTTCCGAAAATTTTACAAATTTGAASTTTTTTGGATTTGGTTGGAAACTGATCAAATTTTTCAGAAAAATTCAACATTTTCAGAGGAAAACTTTTGTGAAGAAAAATTGGTTGGAAAAGTGGGCGGAGTCAGGGGTCGGAGCCTGAATTGCAAGATTTTCAAAATTTTCCTGCGAAAATCTCAAAATTTTGAATTTACTGAAAACTGAGGTTAAAAAATAACTCGAGAAAAATTGTATTTTAAATAGCGAAAAAATTCGAAATCTGGAAATTCGGGTTTTCCTCGAAAATGGCCGAATTTTGAATTTTTTGAATAATTTTCAGTTTTTTTTTGAATTTTTTGAATATTCGACAGCACTTCTTTCAATTTTTAAACAATTTTTTTGCGAAAAATTTCAAATTTTTGTACCTTCCCACCACTCGAAACCTCATCATCCACCACAATTTTCACATTTTTCGTTTTTCTCGAAAGTTCGTCTTCTTCTTTTTCTTGACAAATTTCTTGTGGCGTCGCTCCCGACTCGCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCAGAAATTTTGAGAGTAAATTC</pcr_primer_p1>
		<pcr_primer_p2>ACCTCAGTTTTCAGTAAATTCAA</pcr_primer_p2>
		<pcr_amplicon_size>405</pcr_amplicon_size>
		<canonical_amplicon>AATCAGAAATTTTGAGAGTAAATTCCCTATAAAAGTGGGCGGAGCCTAAATTGCAGATTGCTATTGTAGGCTCCGCCCCTGACTCCGCCCACTTATTTTCCTTAAAATTTCAGAAATTTTATGAAAATTTCGGTTTTTTTTTGGGATTTTTGAGGAAAATTTTAAAATTTTGGATTTTCCGAAAATTCGATTTTTTTCCGAAAATTTTACAAATTTGAACTTTTTTGGATTTGGTTGGAAACTGATCAAATTTTTCAGAAAAATTCAACATTTTCAGAGGAAAACTTTTGTGAAGAAAAATTGGTTGGAAAAGTGGGCGGAGTCAGGGGTCGGAGCCTGAATTGCAAGATTTTCAAAATTTTCCTGCGAAAATCTCAAAATTTTGAATTTACTGAAAACTGAGGT</canonical_amplicon>
		<polymorphic_amplicon>AATCAGAAATTTTGAGAGTAAATTCCCTATAAAAGTGGGCGGAGCCTAAATTGCAGATTGCTATTGTAGGCTCCGCCCCTGACTCCGCCCACTTATTTTCCTTAAAATTTCAGAAATTTTATGAAAATTTCGGTTTTTTTTTGGGATTTTTGAGGAAAATTTTAAAATTTTGGATTTTCCGAAAATTCGATTTTTTTCCGAAAATTTTACAAATTTGAASTTTTTTGGATTTGGTTGGAAACTGATCAAATTTTTCAGAAAAATTCAACATTTTCAGAGGAAAACTTTTGTGAAGAAAAATTGGTTGGAAAAGTGGGCGGAGTCAGGGGTCGGAGCCTGAATTGCAAGATTTTCAAAATTTTCCTGCGAAAATCTCAAAATTTTGAATTTACTGAAAACTGAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28979</snp_id>
        <super_contig>c004300781.Contig3</super_contig>
        <contig_pos>1609</contig_pos>
        <strand>-</strand>
        <context>ATTTGGTTGG[G/T]AACTGATCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATTTTTTTCCGAAAATTTTACAAATTTGAACTTTTTTGGATTTGGTTGG</left_flank>
        <right_flank>AACTGATCAAATTTTTCAGAAAAATTCAACATTTTCAGAGGAAAACTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGTCGGCGGTCGGCGATTTTCGACCGACCGAAATGGAAGCCTTACTGAAAATTTGGCCGACGATATATCAGTGGGTGTAAAAATTAGATAAGGGTCCCCCTTTATGTGCTTTTCAAGTTCAAAAAGTATCAAAAAATATCAGGGGCTGTTTGTTTGGAATTTTTTGAAAATCGATCAAAGTTGTTAGATTTTCCAAAAAAATGGATTATTAAATTCTCAGAAAATTCGAATTCTCGAAATTTCAACAGAACAATCGAAAAAATCAGAAATTTTGAGAGTAAATTCCCTATAAAAGTGGGCGGAGCCTAAATTGCAGATTGCTATTGTAGGCTCCGCCCCTGACTCCGCCCACTTATTTTCCTTAAAATTTCAGAAATTTTATGAAAATTTCGGTTTTTTTTTGGGATTTTTGAGGAAAATTTTAAAATTTTGGATTTTCCGAAAATTCGATTTTTTTCCGAAAATTTTACAAATTTGAACTTTTTTGGATTTGGTTGGAAACTGATCAAATTTTTCAGAAAAATTCAACATTTTCAGAGGAAAACTTTTGTGAAGAAAAATTGGTTGGAAAAGTGGGCGGAGTCAGGGGTCGGAGCCTGAATTGCAAGATTTTCAAAATTTTCCTGCGAAAATCTCAAAATTTTGAATTTACTGAAAACTGAGGTTAAAAAATAACTCGAGAAAAATTGTATTTTAAATAGCGAAAAAATTCGAAATCTGGAAATTCGGGTTTTCCTCGAAAATGGCCGAATTTTGAATTTTTTGAATAATTTTCAGTTTTTTTTTGAATTTTTTGAATATTCGACAGCACTTCTTTCAATTTTTAAACAATTTTTTTGCGAAAAATTTCAAATTTTTGTACCTTCCCACCACTCGAAACCTCATCATCCACCACAATTTTCACATTTTTCGTTTTTCTCGAAAGTTCGTCTTCTTCTTTTTCTTGACAAATTTCTTGTGGCGTCGCTCCCGACTCGCCGGTTGCCGCTTCTTTTTGCA</canonical>
            <polymorphic>CGGTCGGCGGTCGGCGATTTTCGACCGACCGAAATGGAAGCCTTACTGAAAATTTGGCCGACGATATATCAGTGGGTGTAAAAATTAGATAAGGGTCCCCCTTTATGTGCTTTTCAAGTTCAAAAAGTATCAAAAAATATCAGGGGCTGTTTGTTTGGAATTTTTTGAAAATCGATCAAAGTTGTTAGATTTTCCAAAAAAATGGATTATTAAATTCTCAGAAAATTCGAATTCTCGAAATTTCAACAGAACAATCGAAAAAATCAGAAATTTTGAGAGTAAATTCCCTATAAAAGTGGGCGGAGCCTAAATTGCAGATTGCTATTGTAGGCTCCGCCCCTGACTCCGCCCACTTATTTTCCTTAAAATTTCAGAAATTTTATGAAAATTTCGGTTTTTTTTTGGGATTTTTGAGGAAAATTTTAAAATTTTGGATTTTCCGAAAATTCGATTTTTTTCCGAAAATTTTACAAATTTGAACTTTTTTGGATTTGGTTGGKAACTGATCAAATTTTTCAGAAAAATTCAACATTTTCAGAGGAAAACTTTTGTGAAGAAAAATTGGTTGGAAAAGTGGGCGGAGTCAGGGGTCGGAGCCTGAATTGCAAGATTTTCAAAATTTTCCTGCGAAAATCTCAAAATTTTGAATTTACTGAAAACTGAGGTTAAAAAATAACTCGAGAAAAATTGTATTTTAAATAGCGAAAAAATTCGAAATCTGGAAATTCGGGTTTTCCTCGAAAATGGCCGAATTTTGAATTTTTTGAATAATTTTCAGTTTTTTTTTGAATTTTTTGAATATTCGACAGCACTTCTTTCAATTTTTAAACAATTTTTTTGCGAAAAATTTCAAATTTTTGTACCTTCCCACCACTCGAAACCTCATCATCCACCACAATTTTCACATTTTTCGTTTTTCTCGAAAGTTCGTCTTCTTCTTTTTCTTGACAAATTTCTTGTGGCGTCGCTCCCGACTCGCCGGTTGCCGCTTCTTTTTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCAGAAATTTTGAGAGTAAATTC</pcr_primer_p1>
		<pcr_primer_p2>ACCTCAGTTTTCAGTAAATTCAA</pcr_primer_p2>
		<pcr_amplicon_size>405</pcr_amplicon_size>
		<canonical_amplicon>AATCAGAAATTTTGAGAGTAAATTCCCTATAAAAGTGGGCGGAGCCTAAATTGCAGATTGCTATTGTAGGCTCCGCCCCTGACTCCGCCCACTTATTTTCCTTAAAATTTCAGAAATTTTATGAAAATTTCGGTTTTTTTTTGGGATTTTTGAGGAAAATTTTAAAATTTTGGATTTTCCGAAAATTCGATTTTTTTCCGAAAATTTTACAAATTTGAACTTTTTTGGATTTGGTTGGAAACTGATCAAATTTTTCAGAAAAATTCAACATTTTCAGAGGAAAACTTTTGTGAAGAAAAATTGGTTGGAAAAGTGGGCGGAGTCAGGGGTCGGAGCCTGAATTGCAAGATTTTCAAAATTTTCCTGCGAAAATCTCAAAATTTTGAATTTACTGAAAACTGAGGT</canonical_amplicon>
		<polymorphic_amplicon>AATCAGAAATTTTGAGAGTAAATTCCCTATAAAAGTGGGCGGAGCCTAAATTGCAGATTGCTATTGTAGGCTCCGCCCCTGACTCCGCCCACTTATTTTCCTTAAAATTTCAGAAATTTTATGAAAATTTCGGTTTTTTTTTGGGATTTTTGAGGAAAATTTTAAAATTTTGGATTTTCCGAAAATTCGATTTTTTTCCGAAAATTTTACAAATTTGAACTTTTTTGGATTTGGTTGGKAACTGATCAAATTTTTCAGAAAAATTCAACATTTTCAGAGGAAAACTTTTGTGAAGAAAAATTGGTTGGAAAAGTGGGCGGAGTCAGGGGTCGGAGCCTGAATTGCAAGATTTTCAAAATTTTCCTGCGAAAATCTCAAAATTTTGAATTTACTGAAAACTGAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28980</snp_id>
        <super_contig>c004300781.Contig3</super_contig>
        <contig_pos>28657</contig_pos>
        <strand>+</strand>
        <context>TGTAAGTCAC[A/G]TTTTTTTAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAGACAAGTTTTTGCTGATGATCTGATATTTTTGAAAAATGTAAGTCAC</left_flank>
        <right_flank>TTTTTTTAAAGGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAATTTCACTGAATTATGGAATTAAAAAAGTGGAAAAGGAGCTGGAAAATCAAGATTTTTTGGCTATTTTTCTGAAAGATTTGGAATTTCTTTTCAAGTTTCAAAAGTCGAAAATGGACTATTGCTCATTTCAATGTTCGGAATCTCAGAAGATTCTAGAATCCATCGTAGAAATTCTAAAATCAAGAAATCGCCTACTAAAAGTGAAAAATATCAGTATTTCTGTGCCAACCCCTGAAAATGTGCTTTCAATTCTACCGTACCTGGCTTCTGGAACCCTGGAAACCATTGGATTTTCAAATCCCAAAATTCGAAATTCACTGGATATTCAAAAAATCGAAGAGCTAGATCAATGGAAAAACGCCAAAAATCTTTATGCTTCCGAACATTTTTTGGGGGGTGGAAATGCTCGAAAATTTGCTCATTTTGATCGAGGAGCAGTTTTTATGAGACAAGTTTTTGCTGATGATCTGATATTTTTGAAAAATGTAAGTCACTTTTTTTTAAAGGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTGTTAAAAGTTATCTATCTTCCGAATATTATTGCGAAAAAATTCAAAAAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAAGGAAGAAAATTCAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCAGCGGGCGCCTTTCCTACGTGGCAATTTTTCCGGTTTTTTTTTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGAAAATCCTCGTCCCCCGGCGGCACCGTTTTTTTTAATTTTCTTCCTTTTCAACGCCGTTTTTCGGGGATTTCGGATTTTCTTTGAATTTTTCGCAATAATATTTGAAAAATAGATAAATTTTAACACATTTTAATGCAATAAAAATTTCTGGTCGGAGTCCCCCTTTAATGTTGAAAACTCAATTTTTCAGAGTTTC</canonical>
            <polymorphic>CAAAATTTCACTGAATTATGGAATTAAAAAAGTGGAAAAGGAGCTGGAAAATCAAGATTTTTTGGCTATTTTTCTGAAAGATTTGGAATTTCTTTTCAAGTTTCAAAAGTCGAAAATGGACTATTGCTCATTTCAATGTTCGGAATCTCAGAAGATTCTAGAATCCATCGTAGAAATTCTAAAATCAAGAAATCGCCTACTAAAAGTGAAAAATATCAGTATTTCTGTGCCAACCCCTGAAAATGTGCTTTCAATTCTACCGTACCTGGCTTCTGGAACCCTGGAAACCATTGGATTTTCAAATCCCAAAATTCGAAATTCACTGGATATTCAAAAAATCGAAGAGCTAGATCAATGGAAAAACGCCAAAAATCTTTATGCTTCCGAACATTTTTTGGGGGGTGGAAATGCTCGAAAATTTGCTCATTTTGATCGAGGAGCAGTTTTTATGAGACAAGTTTTTGCTGATGATCTGATATTTTTGAAAAATGTAAGTCACRTTTTTTTAAAGGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTGTTAAAAGTTATCTATCTTCCGAATATTATTGCGAAAAAATTCAAAAAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAAGGAAGAAAATTCAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCAGCGGGCGCCTTTCCTACGTGGCAATTTTTCCGGTTTTTTTTTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGAAAATCCTCGTCCCCCGGCGGCACCGTTTTTTTTAATTTTCTTCCTTTTCAACGCCGTTTTTCGGGGATTTCGGATTTTCTTTGAATTTTTCGCAATAATATTTGAAAAATAGATAAATTTTAACACATTTTAATGCAATAAAAATTTCTGGTCGGAGTCCCCCTTTAATGTTGAAAACTCAATTTTTCAGAGTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGTTTTTATGAGACAAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCAACATTAAAGGGGGACT</pcr_primer_p2>
		<pcr_amplicon_size>540</pcr_amplicon_size>
		<canonical_amplicon>GCAGTTTTTATGAGACAAGTTTTTGCTGATGATCTGATATTTTTGAAAAATGTAAGTCACTTTTTTTTAAAGGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTGTTAAAAGTTATCTATCTTCCGAATATTATTGCGAAAAAATTCAAAAAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAAGGAAGAAAATTCAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCAGCGGGCGCCTTTCCTACGTGGCAATTTTTCCGGTTTTTTTTTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGAAAATCCTCGTCCCCCGGCGGCACCGTTTTTTTTAATTTTCTTCCTTTTCAACGCCGTTTTTCGGGGATTTCGGATTTTCTTTGAATTTTTCGCAATAATATTTGAAAAATAGATAAATTTTAACACATTTTAATGCAATAAAAATTTCTGGTCGGAGTCCCCCTTTAATGTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GCAGTTTTTATGAGACAAGTTTTTGCTGATGATCTGATATTTTTGAAAAATGTAAGTCACRTTTTTTTAAAGGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTGTTAAAAGTTATCTATCTTCCGAATATTATTGCGAAAAAATTCAAAAAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAAGGAAGAAAATTCAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCAGCGGGCGCCTTTCCTACGTGGCAATTTTTCCGGTTTTTTTTTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGAAAATCCTCGTCCCCCGGCGGCACCGTTTTTTTTAATTTTCTTCCTTTTCAACGCCGTTTTTCGGGGATTTCGGATTTTCTTTGAATTTTTCGCAATAATATTTGAAAAATAGATAAATTTTAACACATTTTAATGCAATAAAAATTTCTGGTCGGAGTCCCCCTTTAATGTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28981</snp_id>
        <super_contig>c004300781.Contig3</super_contig>
        <contig_pos>28668</contig_pos>
        <strand></strand>
        <context>TTTTTTTAAA[G/A]GGGGGACTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTGCTGATGATCTGATATTTTTGAAAAATGTAAGTCACTTTTTTTTAAA</left_flank>
        <right_flank>GGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTGTTAAAAGTTA</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAATTATGGAATTAAAAAAGTGGAAAAGGAGCTGGAAAATCAAGATTTTTTGGCTATTTTTCTGAAAGATTTGGAATTTCTTTTCAAGTTTCAAAAGTCGAAAATGGACTATTGCTCATTTCAATGTTCGGAATCTCAGAAGATTCTAGAATCCATCGTAGAAATTCTAAAATCAAGAAATCGCCTACTAAAAGTGAAAAATATCAGTATTTCTGTGCCAACCCCTGAAAATGTGCTTTCAATTCTACCGTACCTGGCTTCTGGAACCCTGGAAACCATTGGATTTTCAAATCCCAAAATTCGAAATTCACTGGATATTCAAAAAATCGAAGAGCTAGATCAATGGAAAAACGCCAAAAATCTTTATGCTTCCGAACATTTTTTGGGGGGTGGAAATGCTCGAAAATTTGCTCATTTTGATCGAGGAGCAGTTTTTATGAGACAAGTTTTTGCTGATGATCTGATATTTTTGAAAAATGTAAGTCACTTTTTTTTAAAGGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTGTTAAAAGTTATCTATCTTCCGAATATTATTGCGAAAAAATTCAAAAAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAAGGAAGAAAATTCAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCAGCGGGCGCCTTTCCTACGTGGCAATTTTTCCGGTTTTTTTTTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGAAAATCCTCGTCCCCCGGCGGCACCGTTTTTTTTAATTTTCTTCCTTTTCAACGCCGTTTTTCGGGGATTTCGGATTTTCTTTGAATTTTTCGCAATAATATTTGAAAAATAGATAAATTTTAACACATTTTAATGCAATAAAAATTTCTGGTCGGAGTCCCCCTTTAATGTTGAAAACTCAATTTTTCAGAGTTTCCAATCGTCCCT</canonical>
            <polymorphic>TGAATTATGGAATTAAAAAAGTGGAAAAGGAGCTGGAAAATCAAGATTTTTTGGCTATTTTTCTGAAAGATTTGGAATTTCTTTTCAAGTTTCAAAAGTCGAAAATGGACTATTGCTCATTTCAATGTTCGGAATCTCAGAAGATTCTAGAATCCATCGTAGAAATTCTAAAATCAAGAAATCGCCTACTAAAAGTGAAAAATATCAGTATTTCTGTGCCAACCCCTGAAAATGTGCTTTCAATTCTACCGTACCTGGCTTCTGGAACCCTGGAAACCATTGGATTTTCAAATCCCAAAATTCGAAATTCACTGGATATTCAAAAAATCGAAGAGCTAGATCAATGGAAAAACGCCAAAAATCTTTATGCTTCCGAACATTTTTTGGGGGGTGGAAATGCTCGAAAATTTGCTCATTTTGATCGAGGAGCAGTTTTTATGAGACAAGTTTTTGCTGATGATCTGATATTTTTGAAAAATGTAAGTCACTTTTTTTTAAARGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTGTTAAAAGTTATCTATCTTCCGAATATTATTGCGAAAAAATTCAAAAAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAAGGAAGAAAATTCAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCAGCGGGCGCCTTTCCTACGTGGCAATTTTTCCGGTTTTTTTTTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGAAAATCCTCGTCCCCCGGCGGCACCGTTTTTTTTAATTTTCTTCCTTTTCAACGCCGTTTTTCGGGGATTTCGGATTTTCTTTGAATTTTTCGCAATAATATTTGAAAAATAGATAAATTTTAACACATTTTAATGCAATAAAAATTTCTGGTCGGAGTCCCCCTTTAATGTTGAAAACTCAATTTTTCAGAGTTTCCAATCGTCCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGCTGATGATCTGATATTT</pcr_primer_p1>
		<pcr_primer_p2>TTCAACATTAAAGGGGGACT</pcr_primer_p2>
		<pcr_amplicon_size>521</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGCTGATGATCTGATATTTTTGAAAAATGTAAGTCACTTTTTTTTAAAGGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTGTTAAAAGTTATCTATCTTCCGAATATTATTGCGAAAAAATTCAAAAAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAAGGAAGAAAATTCAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCAGCGGGCGCCTTTCCTACGTGGCAATTTTTCCGGTTTTTTTTTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGAAAATCCTCGTCCCCCGGCGGCACCGTTTTTTTTAATTTTCTTCCTTTTCAACGCCGTTTTTCGGGGATTTCGGATTTTCTTTGAATTTTTCGCAATAATATTTGAAAAATAGATAAATTTTAACACATTTTAATGCAATAAAAATTTCTGGTCGGAGTCCCCCTTTAATGTTGAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGCTGATGATCTGATATTTTTGAAAAATGTAAGTCACTTTTTTTTAAARGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTGTTAAAAGTTATCTATCTTCCGAATATTATTGCGAAAAAATTCAAAAAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAAGGAAGAAAATTCAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCAGCGGGCGCCTTTCCTACGTGGCAATTTTTCCGGTTTTTTTTTCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGAAAATCCTCGTCCCCCGGCGGCACCGTTTTTTTTAATTTTCTTCCTTTTCAACGCCGTTTTTCGGGGATTTCGGATTTTCTTTGAATTTTTCGCAATAATATTTGAAAAATAGATAAATTTTAACACATTTTAATGCAATAAAAATTTCTGGTCGGAGTCCCCCTTTAATGTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28982</snp_id>
        <super_contig>c004300781.Contig3</super_contig>
        <contig_pos>32107</contig_pos>
        <strand></strand>
        <context>aggttagaga[T/G]tattttttgc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GTGGAATTTTGGGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGA</left_flank>
        <right_flank>TATTTTTTGCTGTCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGTTGGGAACCTGAAAAACGCGCGCTTCTTCGCACACAAAAGTTGGCTGCGTGCCAGATTCGAAAATTTTGAAACGTGTTTTGAAAAAAACGTGAAGTTAAACGTTGTTGAGTCGCTACTCACCGAAAAGCCGCGACCGCGCGACGCGTCCAAACTTGGCGCGCTTTCCAATTTTTAAATCTAGGTTCCCTTCCGCGAGGCCGTGACAACCCATAAATAGACCTATTTTTTTCTATTCATTTTTAAAATTCCAAGATTACTGTAGACAGTATACACTGCGACAAATTGCGGACGTCGGGAAATTTCAATTTTCCGGTATTTTTGTCATCATTTCAGTCAATTTTCTCTCATTTTTAGTGGTTTTTCTTCATTTTTTCTGATTTTTCGCTAGATTTTTAGCTTCTAATCCTTAGTTTCATCATTTTCGCACCATTTTCTGCATAGACAAGTGGAATTTTGGGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGATTATTTTTTGCTGTCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAACTGTGGAGACGCAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTTAGACAAGCATAATATTGTTATGGAACGTTTTTCAGTGTTTTTTTGCCATTTTTCGTTGTGTTTTCGTTCAATTTTCTTGGTTTTTCCCCAGAATGTTGCTACTAAAATTGATTTTCTCTGTTCACTGCGTCAATTTCTATGCGGAATTCCCAAATTTCCAGCTCACCAACCTCAGAAGTCATGAAATTCAACGCAATTCATTTTTCTTCAAATTTTCTCGATTTTCAGCCGACTTTTCGGCTTCTTTTGCGAATTTCGTACTTTTAAGCTCATTTTTAACCAGAAAAACCTCAATTTTCCCTGCGAAAATGCACCACATCAGGATTTCCCTATTATAAACCTCTTCTCGTGATATTTCTATCAATTTTCGTCTATAATTCTCAGAATTTC</canonical>
            <polymorphic>CGGTTGGGAACCTGAAAAACGCGCGCTTCTTCGCACACAAAAGTTGGCTGCGTGCCAGATTCGAAAATTTTGAAACGTGTTTTGAAAAAAACGTGAAGTTAAACGTTGTTGAGTCGCTACTCACCGAAAAGCCGCGACCGCGCGACGCGTCCAAACTTGGCGCGCTTTCCAATTTTTAAATCTAGGTTCCCTTCCGCGAGGCCGTGACAACCCATAAATAGACCTATTTTTTTCTATTCATTTTTAAAATTCCAAGATTACTGTAGACAGTATACACTGCGACAAATTGCGGACGTCGGGAAATTTCAATTTTCCGGTATTTTTGTCATCATTTCAGTCAATTTTCTCTCATTTTTAGTGGTTTTTCTTCATTTTTTCTGATTTTTCGCTAGATTTTTAGCTTCTAATCCTTAGTTTCATCATTTTCGCACCATTTTCTGCATAGACAAGTGGAATTTTGGGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGAKTATTTTTTGCTGTCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAACTGTGGAGACGCAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTTAGACAAGCATAATATTGTTATGGAACGTTTTTCAGTGTTTTTTTGCCATTTTTCGTTGTGTTTTCGTTCAATTTTCTTGGTTTTTCCCCAGAATGTTGCTACTAAAATTGATTTTCTCTGTTCACTGCGTCAATTTCTATGCGGAATTCCCAAATTTCCAGCTCACCAACCTCAGAAGTCATGAAATTCAACGCAATTCATTTTTCTTCAAATTTTCTCGATTTTCAGCCGACTTTTCGGCTTCTTTTGCGAATTTCGTACTTTTAAGCTCATTTTTAACCAGAAAAACCTCAATTTTCCCTGCGAAAATGCACCACATCAGGATTTCCCTATTATAAACCTCTTCTCGTGATATTTCTATCAATTTTCGTCTATAATTCTCAGAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTCTAATCCTTAGTTTCATCA</pcr_primer_p1>
		<pcr_primer_p2>ACACTGAAAAACGTTCCATAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTTCTAATCCTTAGTTTCATCATTTTCGCACCATTTTCTGCATAGACAAGTGGAATTTTGGGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGATTATTTTTTGCTGTCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAACTGTGGAGACGCAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTTAGACAAGCATAATATTGTTATGGAACGTTTTTCAGTGT</canonical_amplicon>
		<polymorphic_amplicon>GCTTCTAATCCTTAGTTTCATCATTTTCGCACCATTTTCTGCATAGACAAGTGGAATTTTGGGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGAKTATTTTTTGCTGTCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAACTGTGGAGACGCAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTTAGACAAGCATAATATTGTTATGGAACGTTTTTCAGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28983</snp_id>
        <super_contig>c004300781.Contig3</super_contig>
        <contig_pos>32118</contig_pos>
        <strand></strand>
        <context>tattttttgc[T/A]gycttagtac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGATTATTTTTTGC</left_flank>
        <right_flank>GTCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAAAAACGCGCGCTTCTTCGCACACAAAAGTTGGCTGCGTGCCAGATTCGAAAATTTTGAAACGTGTTTTGAAAAAAACGTGAAGTTAAACGTTGTTGAGTCGCTACTCACCGAAAAGCCGCGACCGCGCGACGCGTCCAAACTTGGCGCGCTTTCCAATTTTTAAATCTAGGTTCCCTTCCGCGAGGCCGTGACAACCCATAAATAGACCTATTTTTTTCTATTCATTTTTAAAATTCCAAGATTACTGTAGACAGTATACACTGCGACAAATTGCGGACGTCGGGAAATTTCAATTTTCCGGTATTTTTGTCATCATTTCAGTCAATTTTCTCTCATTTTTAGTGGTTTTTCTTCATTTTTTCTGATTTTTCGCTAGATTTTTAGCTTCTAATCCTTAGTTTCATCATTTTCGCACCATTTTCTGCATAGACAAGTGGAATTTTGGGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGATTATTTTTTGCTGTCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAACTGTGGAGACGCAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTTAGACAAGCATAATATTGTTATGGAACGTTTTTCAGTGTTTTTTTGCCATTTTTCGTTGTGTTTTCGTTCAATTTTCTTGGTTTTTCCCCAGAATGTTGCTACTAAAATTGATTTTCTCTGTTCACTGCGTCAATTTCTATGCGGAATTCCCAAATTTCCAGCTCACCAACCTCAGAAGTCATGAAATTCAACGCAATTCATTTTTCTTCAAATTTTCTCGATTTTCAGCCGACTTTTCGGCTTCTTTTGCGAATTTCGTACTTTTAAGCTCATTTTTAACCAGAAAAACCTCAATTTTCCCTGCGAAAATGCACCACATCAGGATTTCCCTATTATAAACCTCTTCTCGTGATATTTCTATCAATTTTCGTCTATAATTCTCAGAATTTCAATCTCCCTTT</canonical>
            <polymorphic>CTGAAAAACGCGCGCTTCTTCGCACACAAAAGTTGGCTGCGTGCCAGATTCGAAAATTTTGAAACGTGTTTTGAAAAAAACGTGAAGTTAAACGTTGTTGAGTCGCTACTCACCGAAAAGCCGCGACCGCGCGACGCGTCCAAACTTGGCGCGCTTTCCAATTTTTAAATCTAGGTTCCCTTCCGCGAGGCCGTGACAACCCATAAATAGACCTATTTTTTTCTATTCATTTTTAAAATTCCAAGATTACTGTAGACAGTATACACTGCGACAAATTGCGGACGTCGGGAAATTTCAATTTTCCGGTATTTTTGTCATCATTTCAGTCAATTTTCTCTCATTTTTAGTGGTTTTTCTTCATTTTTTCTGATTTTTCGCTAGATTTTTAGCTTCTAATCCTTAGTTTCATCATTTTCGCACCATTTTCTGCATAGACAAGTGGAATTTTGGGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGATTATTTTTTGCWGTCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAACTGTGGAGACGCAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTTAGACAAGCATAATATTGTTATGGAACGTTTTTCAGTGTTTTTTTGCCATTTTTCGTTGTGTTTTCGTTCAATTTTCTTGGTTTTTCCCCAGAATGTTGCTACTAAAATTGATTTTCTCTGTTCACTGCGTCAATTTCTATGCGGAATTCCCAAATTTCCAGCTCACCAACCTCAGAAGTCATGAAATTCAACGCAATTCATTTTTCTTCAAATTTTCTCGATTTTCAGCCGACTTTTCGGCTTCTTTTGCGAATTTCGTACTTTTAAGCTCATTTTTAACCAGAAAAACCTCAATTTTCCCTGCGAAAATGCACCACATCAGGATTTCCCTATTATAAACCTCTTCTCGTGATATTTCTATCAATTTTCGTCTATAATTCTCAGAATTTCAATCTCCCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTCTAATCCTTAGTTTCATCA</pcr_primer_p1>
		<pcr_primer_p2>ACACTGAAAAACGTTCCATAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTTCTAATCCTTAGTTTCATCATTTTCGCACCATTTTCTGCATAGACAAGTGGAATTTTGGGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGATTATTTTTTGCTGTCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAACTGTGGAGACGCAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTTAGACAAGCATAATATTGTTATGGAACGTTTTTCAGTGT</canonical_amplicon>
		<polymorphic_amplicon>GCTTCTAATCCTTAGTTTCATCATTTTCGCACCATTTTCTGCATAGACAAGTGGAATTTTGGGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGATTATTTTTTGCWGTCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAACTGTGGAGACGCAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTTAGACAAGCATAATATTGTTATGGAACGTTTTTCAGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28984</snp_id>
        <super_contig>c004300781.Contig3</super_contig>
        <contig_pos>32120</contig_pos>
        <strand></strand>
        <context>ttttttgcwg[T/C]cttagtacgg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGATTATTTTTTGCTG</left_flank>
        <right_flank>CTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAACT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAACGCGCGCTTCTTCGCACACAAAAGTTGGCTGCGTGCCAGATTCGAAAATTTTGAAACGTGTTTTGAAAAAAACGTGAAGTTAAACGTTGTTGAGTCGCTACTCACCGAAAAGCCGCGACCGCGCGACGCGTCCAAACTTGGCGCGCTTTCCAATTTTTAAATCTAGGTTCCCTTCCGCGAGGCCGTGACAACCCATAAATAGACCTATTTTTTTCTATTCATTTTTAAAATTCCAAGATTACTGTAGACAGTATACACTGCGACAAATTGCGGACGTCGGGAAATTTCAATTTTCCGGTATTTTTGTCATCATTTCAGTCAATTTTCTCTCATTTTTAGTGGTTTTTCTTCATTTTTTCTGATTTTTCGCTAGATTTTTAGCTTCTAATCCTTAGTTTCATCATTTTCGCACCATTTTCTGCATAGACAAGTGGAATTTTGGGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGATTATTTTTTGCTGTCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAACTGTGGAGACGCAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTTAGACAAGCATAATATTGTTATGGAACGTTTTTCAGTGTTTTTTTGCCATTTTTCGTTGTGTTTTCGTTCAATTTTCTTGGTTTTTCCCCAGAATGTTGCTACTAAAATTGATTTTCTCTGTTCACTGCGTCAATTTCTATGCGGAATTCCCAAATTTCCAGCTCACCAACCTCAGAAGTCATGAAATTCAACGCAATTCATTTTTCTTCAAATTTTCTCGATTTTCAGCCGACTTTTCGGCTTCTTTTGCGAATTTCGTACTTTTAAGCTCATTTTTAACCAGAAAAACCTCAATTTTCCCTGCGAAAATGCACCACATCAGGATTTCCCTATTATAAACCTCTTCTCGTGATATTTCTATCAATTTTCGTCTATAATTCTCAGAATTTCAATCTCCCTTTGA</canonical>
            <polymorphic>GAAAAACGCGCGCTTCTTCGCACACAAAAGTTGGCTGCGTGCCAGATTCGAAAATTTTGAAACGTGTTTTGAAAAAAACGTGAAGTTAAACGTTGTTGAGTCGCTACTCACCGAAAAGCCGCGACCGCGCGACGCGTCCAAACTTGGCGCGCTTTCCAATTTTTAAATCTAGGTTCCCTTCCGCGAGGCCGTGACAACCCATAAATAGACCTATTTTTTTCTATTCATTTTTAAAATTCCAAGATTACTGTAGACAGTATACACTGCGACAAATTGCGGACGTCGGGAAATTTCAATTTTCCGGTATTTTTGTCATCATTTCAGTCAATTTTCTCTCATTTTTAGTGGTTTTTCTTCATTTTTTCTGATTTTTCGCTAGATTTTTAGCTTCTAATCCTTAGTTTCATCATTTTCGCACCATTTTCTGCATAGACAAGTGGAATTTTGGGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGATTATTTTTTGCTGYCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAACTGTGGAGACGCAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTTAGACAAGCATAATATTGTTATGGAACGTTTTTCAGTGTTTTTTTGCCATTTTTCGTTGTGTTTTCGTTCAATTTTCTTGGTTTTTCCCCAGAATGTTGCTACTAAAATTGATTTTCTCTGTTCACTGCGTCAATTTCTATGCGGAATTCCCAAATTTCCAGCTCACCAACCTCAGAAGTCATGAAATTCAACGCAATTCATTTTTCTTCAAATTTTCTCGATTTTCAGCCGACTTTTCGGCTTCTTTTGCGAATTTCGTACTTTTAAGCTCATTTTTAACCAGAAAAACCTCAATTTTCCCTGCGAAAATGCACCACATCAGGATTTCCCTATTATAAACCTCTTCTCGTGATATTTCTATCAATTTTCGTCTATAATTCTCAGAATTTCAATCTCCCTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTCTAATCCTTAGTTTCATCA</pcr_primer_p1>
		<pcr_primer_p2>ACACTGAAAAACGTTCCATAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTTCTAATCCTTAGTTTCATCATTTTCGCACCATTTTCTGCATAGACAAGTGGAATTTTGGGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGATTATTTTTTGCTGTCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAACTGTGGAGACGCAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTTAGACAAGCATAATATTGTTATGGAACGTTTTTCAGTGT</canonical_amplicon>
		<polymorphic_amplicon>GCTTCTAATCCTTAGTTTCATCATTTTCGCACCATTTTCTGCATAGACAAGTGGAATTTTGGGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGATTATTTTTTGCTGYCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAACTGTGGAGACGCAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTTAGACAAGCATAATATTGTTATGGAACGTTTTTCAGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28985</snp_id>
        <super_contig>c004300781.Contig3</super_contig>
        <contig_pos>32170</contig_pos>
        <strand></strand>
        <context>gcacacaaac[T/G]gtggagacgc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAAC</left_flank>
        <right_flank>GTGGAGACGCAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTTAGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTTTGAAACGTGTTTTGAAAAAAACGTGAAGTTAAACGTTGTTGAGTCGCTACTCACCGAAAAGCCGCGACCGCGCGACGCGTCCAAACTTGGCGCGCTTTCCAATTTTTAAATCTAGGTTCCCTTCCGCGAGGCCGTGACAACCCATAAATAGACCTATTTTTTTCTATTCATTTTTAAAATTCCAAGATTACTGTAGACAGTATACACTGCGACAAATTGCGGACGTCGGGAAATTTCAATTTTCCGGTATTTTTGTCATCATTTCAGTCAATTTTCTCTCATTTTTAGTGGTTTTTCTTCATTTTTTCTGATTTTTCGCTAGATTTTTAGCTTCTAATCCTTAGTTTCATCATTTTCGCACCATTTTCTGCATAGACAAGTGGAATTTTGGGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGATTATTTTTTGCTGTCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAACTGTGGAGACGCAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTTAGACAAGCATAATATTGTTATGGAACGTTTTTCAGTGTTTTTTTGCCATTTTTCGTTGTGTTTTCGTTCAATTTTCTTGGTTTTTCCCCAGAATGTTGCTACTAAAATTGATTTTCTCTGTTCACTGCGTCAATTTCTATGCGGAATTCCCAAATTTCCAGCTCACCAACCTCAGAAGTCATGAAATTCAACGCAATTCATTTTTCTTCAAATTTTCTCGATTTTCAGCCGACTTTTCGGCTTCTTTTGCGAATTTCGTACTTTTAAGCTCATTTTTAACCAGAAAAACCTCAATTTTCCCTGCGAAAATGCACCACATCAGGATTTCCCTATTATAAACCTCTTCTCGTGATATTTCTATCAATTTTCGTCTATAATTCTCAGAATTTCAATCTCCCTTTGAATTTTTTGTCTCAATTTCTCCCGAGAAATCTCAAATTTTCAAGCGAAAAA</canonical>
            <polymorphic>AAAATTTTGAAACGTGTTTTGAAAAAAACGTGAAGTTAAACGTTGTTGAGTCGCTACTCACCGAAAAGCCGCGACCGCGCGACGCGTCCAAACTTGGCGCGCTTTCCAATTTTTAAATCTAGGTTCCCTTCCGCGAGGCCGTGACAACCCATAAATAGACCTATTTTTTTCTATTCATTTTTAAAATTCCAAGATTACTGTAGACAGTATACACTGCGACAAATTGCGGACGTCGGGAAATTTCAATTTTCCGGTATTTTTGTCATCATTTCAGTCAATTTTCTCTCATTTTTAGTGGTTTTTCTTCATTTTTTCTGATTTTTCGCTAGATTTTTAGCTTCTAATCCTTAGTTTCATCATTTTCGCACCATTTTCTGCATAGACAAGTGGAATTTTGGGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGATTATTTTTTGCTGTCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAACKGTGGAGACGCAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTTAGACAAGCATAATATTGTTATGGAACGTTTTTCAGTGTTTTTTTGCCATTTTTCGTTGTGTTTTCGTTCAATTTTCTTGGTTTTTCCCCAGAATGTTGCTACTAAAATTGATTTTCTCTGTTCACTGCGTCAATTTCTATGCGGAATTCCCAAATTTCCAGCTCACCAACCTCAGAAGTCATGAAATTCAACGCAATTCATTTTTCTTCAAATTTTCTCGATTTTCAGCCGACTTTTCGGCTTCTTTTGCGAATTTCGTACTTTTAAGCTCATTTTTAACCAGAAAAACCTCAATTTTCCCTGCGAAAATGCACCACATCAGGATTTCCCTATTATAAACCTCTTCTCGTGATATTTCTATCAATTTTCGTCTATAATTCTCAGAATTTCAATCTCCCTTTGAATTTTTTGTCTCAATTTCTCCCGAGAAATCTCAAATTTTCAAGCGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTCTAATCCTTAGTTTCATCA</pcr_primer_p1>
		<pcr_primer_p2>ACACTGAAAAACGTTCCATAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTTCTAATCCTTAGTTTCATCATTTTCGCACCATTTTCTGCATAGACAAGTGGAATTTTGGGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGATTATTTTTTGCTGTCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAACTGTGGAGACGCAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTTAGACAAGCATAATATTGTTATGGAACGTTTTTCAGTGT</canonical_amplicon>
		<polymorphic_amplicon>GCTTCTAATCCTTAGTTTCATCATTTTCGCACCATTTTCTGCATAGACAAGTGGAATTTTGGGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGATTATTTTTTGCTGTCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAACKGTGGAGACGCAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTTAGACAAGCATAATATTGTTATGGAACGTTTTTCAGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28986</snp_id>
        <super_contig>c004300781.Contig3</super_contig>
        <contig_pos>32217</contig_pos>
        <strand></strand>
        <context>ttttttttct[T/C]agacaagcat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AACTGTGGAGACGCAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCT</left_flank>
        <right_flank>AGACAAGCATAATATTGTTATGGAACGTTTTTCAGTGTTTTTTTGCCATT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTCGCTACTCACCGAAAAGCCGCGACCGCGCGACGCGTCCAAACTTGGCGCGCTTTCCAATTTTTAAATCTAGGTTCCCTTCCGCGAGGCCGTGACAACCCATAAATAGACCTATTTTTTTCTATTCATTTTTAAAATTCCAAGATTACTGTAGACAGTATACACTGCGACAAATTGCGGACGTCGGGAAATTTCAATTTTCCGGTATTTTTGTCATCATTTCAGTCAATTTTCTCTCATTTTTAGTGGTTTTTCTTCATTTTTTCTGATTTTTCGCTAGATTTTTAGCTTCTAATCCTTAGTTTCATCATTTTCGCACCATTTTCTGCATAGACAAGTGGAATTTTGGGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGATTATTTTTTGCTGTCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAACTGTGGAGACGCAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTTAGACAAGCATAATATTGTTATGGAACGTTTTTCAGTGTTTTTTTGCCATTTTTCGTTGTGTTTTCGTTCAATTTTCTTGGTTTTTCCCCAGAATGTTGCTACTAAAATTGATTTTCTCTGTTCACTGCGTCAATTTCTATGCGGAATTCCCAAATTTCCAGCTCACCAACCTCAGAAGTCATGAAATTCAACGCAATTCATTTTTCTTCAAATTTTCTCGATTTTCAGCCGACTTTTCGGCTTCTTTTGCGAATTTCGTACTTTTAAGCTCATTTTTAACCAGAAAAACCTCAATTTTCCCTGCGAAAATGCACCACATCAGGATTTCCCTATTATAAACCTCTTCTCGTGATATTTCTATCAATTTTCGTCTATAATTCTCAGAATTTCAATCTCCCTTTGAATTTTTTGTCTCAATTTCTCCCGAGAAATCTCAAATTTTCAAGCGAAAAACCCCGTCATGGAACCAGCTCCAACATTCCCAAATTCCCGTAAAAAGG</canonical>
            <polymorphic>GAGTCGCTACTCACCGAAAAGCCGCGACCGCGCGACGCGTCCAAACTTGGCGCGCTTTCCAATTTTTAAATCTAGGTTCCCTTCCGCGAGGCCGTGACAACCCATAAATAGACCTATTTTTTTCTATTCATTTTTAAAATTCCAAGATTACTGTAGACAGTATACACTGCGACAAATTGCGGACGTCGGGAAATTTCAATTTTCCGGTATTTTTGTCATCATTTCAGTCAATTTTCTCTCATTTTTAGTGGTTTTTCTTCATTTTTTCTGATTTTTCGCTAGATTTTTAGCTTCTAATCCTTAGTTTCATCATTTTCGCACCATTTTCTGCATAGACAAGTGGAATTTTGGGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGATTATTTTTTGCTGTCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAACTGTGGAGACGCAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTYAGACAAGCATAATATTGTTATGGAACGTTTTTCAGTGTTTTTTTGCCATTTTTCGTTGTGTTTTCGTTCAATTTTCTTGGTTTTTCCCCAGAATGTTGCTACTAAAATTGATTTTCTCTGTTCACTGCGTCAATTTCTATGCGGAATTCCCAAATTTCCAGCTCACCAACCTCAGAAGTCATGAAATTCAACGCAATTCATTTTTCTTCAAATTTTCTCGATTTTCAGCCGACTTTTCGGCTTCTTTTGCGAATTTCGTACTTTTAAGCTCATTTTTAACCAGAAAAACCTCAATTTTCCCTGCGAAAATGCACCACATCAGGATTTCCCTATTATAAACCTCTTCTCGTGATATTTCTATCAATTTTCGTCTATAATTCTCAGAATTTCAATCTCCCTTTGAATTTTTTGTCTCAATTTCTCCCGAGAAATCTCAAATTTTCAAGCGAAAAACCCCGTCATGGAACCAGCTCCAACATTCCCAAATTCCCGTAAAAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGCATAGACAAGTGGAATTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTGAACGAAAACACAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTGCATAGACAAGTGGAATTTTGGGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGATTATTTTTTGCTGTCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAACTGTGGAGACGCAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTTAGACAAGCATAATATTGTTATGGAACGTTTTTCAGTGTTTTTTTGCCATTTTTCGTTGTGTTTTCGTTCAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTGCATAGACAAGTGGAATTTTGGGCTATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGATTATTTTTTGCTGTCTTAGTACGGTAGCGATTTCGAAGCGGAGAGCCTAAATAGCACACAAACTGTGGAGACGCAGACACTTTTTCTCTGCGTCTCAACCTTTTTTTTCTYAGACAAGCATAATATTGTTATGGAACGTTTTTCAGTGTTTTTTTGCCATTTTTCGTTGTGTTTTCGTTCAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28987</snp_id>
        <super_contig>c004300781.Contig3</super_contig>
        <contig_pos>38910</contig_pos>
        <strand>+</strand>
        <context>tctcaaaatc[A/G]ragaatmtca</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTCAGAATTTAGGAATTTTAGAATCTCAGAATCTCAGAATCTCAAAATC</left_flank>
        <right_flank>CAGAATCTCAGAATCTCCAAATCTCAAAATGTCAGAATCTCAGAATATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTACAAGTATGCAAATTGTAAATTTCAGAATTCAAGAGTCTAAAAAAACCAGAGAAAAAGGCAACAAAAAATTGAAGATAAAAAAGTGAAATTTAGTGTTTTCCGGTTTTCGAAATGACGGATTTTTCCTCTAGTAAACCGAAGGGACCTGACGGAGAGAAGGGGTCAGCTGTCGTTTCCTGATTGCTCATTCTTCTTTTTGATGCTAACTTTCTGTCCAGGTGACTTACAAATCAATTCAAAACGCCCCCGTGAAGAAAAGAGGGATGAGAGAATTAGAAAAACTGAAAGGGGACGTAGTAAACAAAATAGTAAACAAGGAATATGAAAGAGGACATCTGGACATACAGACATACATTTCTGAATTTCTGAAATTCGGAATTTCAGAAATTCAAAGTTTCCGAATTTTAGATTTTCAGAATTTCAAAGTTTCTGAACTTCTGAATCTCAGAATTTAGGAATTTTAGAATCTCAGAATCTCAGAATCTCAAAATCTCAGAATCTCAGAATCTCCAAATCTCAAAATGTCAGAATCTCAGAATATCAGATTACCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAAATCTCAAAATCTCAGAACCTCAAAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATATCAGATTATCAGAATCTCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAACTCTCAGAATCTCGGAAAAATGAAAATCTGAAAAATCTAAAAAAAAATTAAGAATCCAAAAAATCCAAAATGACCGGATCTTCCAAAATTTAAAGTTTCGAAATTTCTGAGATATCAAAAAGTTTTGAATATTTGTAAGAAAAC</canonical>
            <polymorphic>AATTTTACAAGTATGCAAATTGTAAATTTCAGAATTCAAGAGTCTAAAAAAACCAGAGAAAAAGGCAACAAAAAATTGAAGATAAAAAAGTGAAATTTAGTGTTTTCCGGTTTTCGAAATGACGGATTTTTCCTCTAGTAAACCGAAGGGACCTGACGGAGAGAAGGGGTCAGCTGTCGTTTCCTGATTGCTCATTCTTCTTTTTGATGCTAACTTTCTGTCCAGGTGACTTACAAATCAATTCAAAACGCCCCCGTGAAGAAAAGAGGGATGAGAGAATTAGAAAAACTGAAAGGGGACGTAGTAAACAAAATAGTAAACAAGGAATATGAAAGAGGACATCTGGACATACAGACATACATTTCTGAATTTCTGAAATTCGGAATTTCAGAAATTCAAAGTTTCCGAATTTTAGATTTTCAGAATTTCAAAGTTTCTGAACTTCTGAATCTCAGAATTTAGGAATTTTAGAATCTCAGAATCTCAGAATCTCAAAATCRCAGAATCTCAGAATCTCCAAATCTCAAAATGTCAGAATCTCAGAATATCAGATTACCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAAATCTCAAAATCTCAGAACCTCAAAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATATCAGATTATCAGAATCTCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAACTCTCAGAATCTCGGAAAAATGAAAATCTGAAAAATCTAAAAAAAAATTAAGAATCCAAAAAATCCAAAATGACCGGATCTTCCAAAATTTAAAGTTTCGAAATTTCTGAGATATCAAAAAGTTTTGAATATTTGTAAGAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>451 104 40 40 40 37 32 32 32 24 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>451 104 40 40 40 37 32 32 32 24 24 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>335 79 36 32 32 31 24 24 24 24 24 16 16 16 16 16 15 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>335 79 36 32 32 31 24 24 24 24 24 24 16 16 16 16 15 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGACATCTGGACATACAGACA</pcr_primer_p1>
		<pcr_primer_p2>TCCGAGATTCTGAGAGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>536</pcr_amplicon_size>
		<canonical_amplicon>GGACATCTGGACATACAGACATACATTTCTGAATTTCTGAAATTCGGAATTTCAGAAATTCAAAGTTTCCGAATTTTAGATTTTCAGAATTTCAAAGTTTCTGAACTTCTGAATCTCAGAATTTAGGAATTTTAGAATCTCAGAATCTCAGAATCTCAAAATCTCAGAATCTCAGAATCTCCAAATCTCAAAATGTCAGAATCTCAGAATATCAGATTACCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAAATCTCAAAATCTCAGAACCTCAAAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATATCAGATTATCAGAATCTCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAACTCTCAGAATCTCGGA</canonical_amplicon>
		<polymorphic_amplicon>GGACATCTGGACATACAGACATACATTTCTGAATTTCTGAAATTCGGAATTTCAGAAATTCAAAGTTTCCGAATTTTAGATTTTCAGAATTTCAAAGTTTCTGAACTTCTGAATCTCAGAATTTAGGAATTTTAGAATCTCAGAATCTCAGAATCTCAAAATCRCAGAATCTCAGAATCTCCAAATCTCAAAATGTCAGAATCTCAGAATATCAGATTACCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAAATCTCAAAATCTCAGAACCTCAAAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATATCAGATTATCAGAATCTCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAACTCTCAGAATCTCGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28988</snp_id>
        <super_contig>c004300781.Contig3</super_contig>
        <contig_pos>38911</contig_pos>
        <strand>+</strand>
        <context>ctcaaaatcr[A/G]agaatmtcag</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCAGAATTTAGGAATTTTAGAATCTCAGAATCTCAGAATCTCAAAATCT</left_flank>
        <right_flank>AGAATCTCAGAATCTCCAAATCTCAAAATGTCAGAATCTCAGAATATCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTACAAGTATGCAAATTGTAAATTTCAGAATTCAAGAGTCTAAAAAAACCAGAGAAAAAGGCAACAAAAAATTGAAGATAAAAAAGTGAAATTTAGTGTTTTCCGGTTTTCGAAATGACGGATTTTTCCTCTAGTAAACCGAAGGGACCTGACGGAGAGAAGGGGTCAGCTGTCGTTTCCTGATTGCTCATTCTTCTTTTTGATGCTAACTTTCTGTCCAGGTGACTTACAAATCAATTCAAAACGCCCCCGTGAAGAAAAGAGGGATGAGAGAATTAGAAAAACTGAAAGGGGACGTAGTAAACAAAATAGTAAACAAGGAATATGAAAGAGGACATCTGGACATACAGACATACATTTCTGAATTTCTGAAATTCGGAATTTCAGAAATTCAAAGTTTCCGAATTTTAGATTTTCAGAATTTCAAAGTTTCTGAACTTCTGAATCTCAGAATTTAGGAATTTTAGAATCTCAGAATCTCAGAATCTCAAAATCTCAGAATCTCAGAATCTCCAAATCTCAAAATGTCAGAATCTCAGAATATCAGATTACCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAAATCTCAAAATCTCAGAACCTCAAAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATATCAGATTATCAGAATCTCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAACTCTCAGAATCTCGGAAAAATGAAAATCTGAAAAATCTAAAAAAAAATTAAGAATCCAAAAAATCCAAAATGACCGGATCTTCCAAAATTTAAAGTTTCGAAATTTCTGAGATATCAAAAAGTTTTGAATATTTGTAAGAAAACT</canonical>
            <polymorphic>ATTTTACAAGTATGCAAATTGTAAATTTCAGAATTCAAGAGTCTAAAAAAACCAGAGAAAAAGGCAACAAAAAATTGAAGATAAAAAAGTGAAATTTAGTGTTTTCCGGTTTTCGAAATGACGGATTTTTCCTCTAGTAAACCGAAGGGACCTGACGGAGAGAAGGGGTCAGCTGTCGTTTCCTGATTGCTCATTCTTCTTTTTGATGCTAACTTTCTGTCCAGGTGACTTACAAATCAATTCAAAACGCCCCCGTGAAGAAAAGAGGGATGAGAGAATTAGAAAAACTGAAAGGGGACGTAGTAAACAAAATAGTAAACAAGGAATATGAAAGAGGACATCTGGACATACAGACATACATTTCTGAATTTCTGAAATTCGGAATTTCAGAAATTCAAAGTTTCCGAATTTTAGATTTTCAGAATTTCAAAGTTTCTGAACTTCTGAATCTCAGAATTTAGGAATTTTAGAATCTCAGAATCTCAGAATCTCAAAATCTRAGAATCTCAGAATCTCCAAATCTCAAAATGTCAGAATCTCAGAATATCAGATTACCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAAATCTCAAAATCTCAGAACCTCAAAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATATCAGATTATCAGAATCTCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAACTCTCAGAATCTCGGAAAAATGAAAATCTGAAAAATCTAAAAAAAAATTAAGAATCCAAAAAATCCAAAATGACCGGATCTTCCAAAATTTAAAGTTTCGAAATTTCTGAGATATCAAAAAGTTTTGAATATTTGTAAGAAAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>335 79 37 32 32 30 24 24 24 24 24 16 16 16 16 16 15 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>335 79 37 32 32 30 24 24 24 24 24 24 16 16 16 16 15 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGACATCTGGACATACAGACA</pcr_primer_p1>
		<pcr_primer_p2>TCCGAGATTCTGAGAGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>536</pcr_amplicon_size>
		<canonical_amplicon>GGACATCTGGACATACAGACATACATTTCTGAATTTCTGAAATTCGGAATTTCAGAAATTCAAAGTTTCCGAATTTTAGATTTTCAGAATTTCAAAGTTTCTGAACTTCTGAATCTCAGAATTTAGGAATTTTAGAATCTCAGAATCTCAGAATCTCAAAATCTCAGAATCTCAGAATCTCCAAATCTCAAAATGTCAGAATCTCAGAATATCAGATTACCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAAATCTCAAAATCTCAGAACCTCAAAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATATCAGATTATCAGAATCTCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAACTCTCAGAATCTCGGA</canonical_amplicon>
		<polymorphic_amplicon>GGACATCTGGACATACAGACATACATTTCTGAATTTCTGAAATTCGGAATTTCAGAAATTCAAAGTTTCCGAATTTTAGATTTTCAGAATTTCAAAGTTTCTGAACTTCTGAATCTCAGAATTTAGGAATTTTAGAATCTCAGAATCTCAGAATCTCAAAATCTRAGAATCTCAGAATCTCCAAATCTCAAAATGTCAGAATCTCAGAATATCAGATTACCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAAATCTCAAAATCTCAGAACCTCAAAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATATCAGATTATCAGAATCTCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAACTCTCAGAATCTCGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb28989</snp_id>
        <super_contig>c004300781.Contig3</super_contig>
        <contig_pos>38917</contig_pos>
        <strand>+</strand>
        <context>atcrragaat[A/C]tcagaatctc</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTAGGAATTTTAGAATCTCAGAATCTCAGAATCTCAAAATCTCAGAAT</left_flank>
        <right_flank>TCAGAATCTCCAAATCTCAAAATGTCAGAATCTCAGAATATCAGATTACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAGTATGCAAATTGTAAATTTCAGAATTCAAGAGTCTAAAAAAACCAGAGAAAAAGGCAACAAAAAATTGAAGATAAAAAAGTGAAATTTAGTGTTTTCCGGTTTTCGAAATGACGGATTTTTCCTCTAGTAAACCGAAGGGACCTGACGGAGAGAAGGGGTCAGCTGTCGTTTCCTGATTGCTCATTCTTCTTTTTGATGCTAACTTTCTGTCCAGGTGACTTACAAATCAATTCAAAACGCCCCCGTGAAGAAAAGAGGGATGAGAGAATTAGAAAAACTGAAAGGGGACGTAGTAAACAAAATAGTAAACAAGGAATATGAAAGAGGACATCTGGACATACAGACATACATTTCTGAATTTCTGAAATTCGGAATTTCAGAAATTCAAAGTTTCCGAATTTTAGATTTTCAGAATTTCAAAGTTTCTGAACTTCTGAATCTCAGAATTTAGGAATTTTAGAATCTCAGAATCTCAGAATCTCAAAATCTCAGAATCTCAGAATCTCCAAATCTCAAAATGTCAGAATCTCAGAATATCAGATTACCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAAATCTCAAAATCTCAGAACCTCAAAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATATCAGATTATCAGAATCTCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAACTCTCAGAATCTCGGAAAAATGAAAATCTGAAAAATCTAAAAAAAAATTAAGAATCCAAAAAATCCAAAATGACCGGATCTTCCAAAATTTAAAGTTTCGAAATTTCTGAGATATCAAAAAGTTTTGAATATTTGTAAGAAAACTCCAGAA</canonical>
            <polymorphic>CAAGTATGCAAATTGTAAATTTCAGAATTCAAGAGTCTAAAAAAACCAGAGAAAAAGGCAACAAAAAATTGAAGATAAAAAAGTGAAATTTAGTGTTTTCCGGTTTTCGAAATGACGGATTTTTCCTCTAGTAAACCGAAGGGACCTGACGGAGAGAAGGGGTCAGCTGTCGTTTCCTGATTGCTCATTCTTCTTTTTGATGCTAACTTTCTGTCCAGGTGACTTACAAATCAATTCAAAACGCCCCCGTGAAGAAAAGAGGGATGAGAGAATTAGAAAAACTGAAAGGGGACGTAGTAAACAAAATAGTAAACAAGGAATATGAAAGAGGACATCTGGACATACAGACATACATTTCTGAATTTCTGAAATTCGGAATTTCAGAAATTCAAAGTTTCCGAATTTTAGATTTTCAGAATTTCAAAGTTTCTGAACTTCTGAATCTCAGAATTTAGGAATTTTAGAATCTCAGAATMTCAGAATCTCAAAATCTCAGAATCTCAGAATCTCCAAATCTCAAAATGTCAGAATCTCAGAATATCAGATTACCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAAATCTCAAAATCTCAGAACCTCAAAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATATCAGATTATCAGAATCTCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAACTCTCAGAATCTCGGAAAAATGAAAATCTGAAAAATCTAAAAAAAAATTAAGAATCCAAAAAATCCAAAATGACCGGATCTTCCAAAATTTAAAGTTTCGAAATTTCTGAGATATCAAAAAGTTTTGAATATTTGTAAGAAAACTCCAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>444 104 44 40 40 40 32 32 32 24 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>444 104 44 40 40 40 32 32 32 24 24 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>407 99 48 45 40 33 32 24 24 24 24 24 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>407 99 48 45 40 33 32 24 24 24 24 24 16 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>440 99 48 45 40 32 24 24 24 24 24 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>440 99 48 45 40 32 24 24 24 24 24 16 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGACATCTGGACATACAGACA</pcr_primer_p1>
		<pcr_primer_p2>TCCGAGATTCTGAGAGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>536</pcr_amplicon_size>
		<canonical_amplicon>GGACATCTGGACATACAGACATACATTTCTGAATTTCTGAAATTCGGAATTTCAGAAATTCAAAGTTTCCGAATTTTAGATTTTCAGAATTTCAAAGTTTCTGAACTTCTGAATCTCAGAATTTAGGAATTTTAGAATCTCAGAATMTCAGAATCTCAAAATCTCAGAATCTCAGAATCTCCAAATCTCAAAATGTCAGAATCTCAGAATATCAGATTACCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAAATCTCAAAATCTCAGAACCTCAAAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATATCAGATTATCAGAATCTCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAACTCTCAGAATCTCGGA</canonical_amplicon>
		<polymorphic_amplicon>GGACATCTGGACATACAGACATACATTTCTGAATTTCTGAAATTCGGAATTTCAGAAATTCAAAGTTTCCGAATTTTAGATTTTCAGAATTTCAAAGTTTCTGAACTTCTGAATCTCAGAATTTAGGAATTTTAGAATCTCAGAATMTCAGAATCTCAAAATCTCAGAATCTCAGAATCTCCAAATCTCAAAATGTCAGAATCTCAGAATATCAGATTACCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAAATCTCAAAATCTCAGAACCTCAAAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATATCAGATTATCAGAATCTCAAAATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGATTATCAGAATCTCAAAATCTCAAACTCTCAGAATCTCGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29006</snp_id>
        <super_contig>c004400720.Contig3</super_contig>
        <contig_pos>521</contig_pos>
        <strand></strand>
        <context>GTCAAAATGG[C/T]YGAAAAATGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTTTTCTAGAAAATTTGAGCTTTTTTGAGGTTTTTTGAGTCAAAATGG</left_flank>
        <right_flank>TGAAAAATGACGATTTTTGCCCCCTTTTTTAAACTAAAAACCGCTAAAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATGTTCGACTAAAAATGAGCTTAAATGACCTAAAATGAGTCTAGAAATTTGGAATTTTGGCTGAAAATGAGCCTAGAAGGCCGATTGCTCAGCTTAAAAAGCAATGTTTTTTTGTCATGAACAGTTGTCATTTTTTGGCGATTTTTCACGACGTTTTTTCAAATGTTTCAACGTTCAGGATGACAAAACAACGACGACGTCAACTAGCACCGCAAAGCCGCCTTCAGAATCCGCAGAAGCATCAAAACCGACGACGACGACGACGTCGTCATCTGGAGACGCGTCAGCTGCTCAGCAGGACGCTCTACAGACGCCGTCTACACCGAAAAAGAACAAGAAGGACAAGAAGAAGGAGAAGAAGAAGGAGGCGAAACAGACGCCACTCGGGAATAACAAGTTTTCGGCGTTGCTCAATGTTGATGCTTAGAATTTGTTGAGAAATTTCCAGATTTTTCTAGAAAATTTGAGCTTTTTTGAGGTTTTTTGAGTCAAAATGGCTGAAAAATGACGATTTTTGCCCCCTTTTTTAAACTAAAAACCGCTAAAAATGCACCAAATTGACCAAAAATAGTCGAATTGCTCAGCTTTAAATTTTCAACCGAAATTGTTGGATTTTTCTTGATTTTTCTAAAAATGCCTGGAATTTTCCATTTTTTGCCTATTTGGTTTATGGGGTCTCTAACCCTCATTTTTTTGGCTGAAAATCTGGAAAAATCTGAAACTTTTAAGCCGAAAATCTGGAATTTTTTTTTGCAAGTTTTCGGCTGAAAACCTGGAAATTTTGACCCAAAAACCCTTGGCTGAATTTTTCGCTGAATTGTTTTGAAAATTTTTTTTCAGATTTTTGGGCTGAAAATTTCAGATTTTCAGCCCTATTTTTCTGTATAGGCACTGATTAATTATTTTTTTTTCATCATTTTTGAGGGATTTTTCCCTAAAAAAAGTGCAATTTTCCATTTTTTTTTTGTGTTTTCGTGTTAAATGTACTAGCTCCGCCC</canonical>
            <polymorphic>CGATGTTCGACTAAAAATGAGCTTAAATGACCTAAAATGAGTCTAGAAATTTGGAATTTTGGCTGAAAATGAGCCTAGAAGGCCGATTGCTCAGCTTAAAAAGCAATGTTTTTTTGTCATGAACAGTTGTCATTTTTTGGCGATTTTTCACGACGTTTTTTCAAATGTTTCAACGTTCAGGATGACAAAACAACGACGACGTCAACTAGCACCGCAAAGCCGCCTTCAGAATCCGCAGAAGCATCAAAACCGACGACGACGACGACGTCGTCATCTGGAGACGCGTCAGCTGCTCAGCAGGACGCTCTACAGACGCCGTCTACACCGAAAAAGAACAAGAAGGACAAGAAGAAGGAGAAGAAGAAGGAGGCGAAACAGACGCCACTCGGGAATAACAAGTTTTCGGCGTTGCTCAATGTTGATGCTTAGAATTTGTTGAGAAATTTCCAGATTTTTCTAGAAAATTTGAGCTTTTTTGAGGTTTTTTGAGTCAAAATGGYTGAAAAATGACGATTTTTGCCCCCTTTTTTAAACTAAAAACCGCTAAAAATGCACCAAATTGACCAAAAATAGTCGAATTGCTCAGCTTTAAATTTTCAACCGAAATTGTTGGATTTTTCTTGATTTTTCTAAAAATGCCTGGAATTTTCCATTTTTTGCCTATTTGGTTTATGGGGTCTCTAACCCTCATTTTTTTGGCTGAAAATCTGGAAAAATCTGAAACTTTTAAGCCGAAAATCTGGAATTTTTTTTTGCAAGTTTTCGGCTGAAAACCTGGAAATTTTGACCCAAAAACCCTTGGCTGAATTTTTCGCTGAATTGTTTTGAAAATTTTTTTTCAGATTTTTGGGCTGAAAATTTCAGATTTTCAGCCCTATTTTTCTGTATAGGCACTGATTAATTATTTTTTTTTCATCATTTTTGAGGGATTTTTCCCTAAAAAAAGTGCAATTTTCCATTTTTTTTTTGTGTTTTCGTGTTAAATGTACTAGCTCCGCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>181 125 120 113 87 70 49 41 36 35 32 29 21 21 12 11 9 8</canonical_bands>
                <polymorphic_bands>181 125 120 116 113 70 49 41 36 35 32 21 21 12 11 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACTCGGGAATAACAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>AAAATCAAGAAAAATCCAACAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CACTCGGGAATAACAAGTTTTCGGCGTTGCTCAATGTTGATGCTTAGAATTTGTTGAGAAATTTCCAGATTTTTCTAGAAAATTTGAGCTTTTTTGAGGTTTTTTGAGTCAAAATGGCTGAAAAATGACGATTTTTGCCCCCTTTTTTAAACTAAAAACCGCTAAAAATGCACCAAATTGACCAAAAATAGTCGAATTGCTCAGCTTTAAATTTTCAACCGAAATTGTTGGATTTTTCTTGATTTT</canonical_amplicon>
		<polymorphic_amplicon>CACTCGGGAATAACAAGTTTTCGGCGTTGCTCAATGTTGATGCTTAGAATTTGTTGAGAAATTTCCAGATTTTTCTAGAAAATTTGAGCTTTTTTGAGGTTTTTTGAGTCAAAATGGYTGAAAAATGACGATTTTTGCCCCCTTTTTTAAACTAAAAACCGCTAAAAATGCACCAAATTGACCAAAAATAGTCGAATTGCTCAGCTTTAAATTTTCAACCGAAATTGTTGGATTTTTCTTGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29007</snp_id>
        <super_contig>c004400720.Contig3</super_contig>
        <contig_pos>522</contig_pos>
        <strand></strand>
        <context>TCAAAATGGY[T/C]GAAAAATGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTTTTCTAGAAAATTTGAGCTTTTTTGAGGTTTTTTGAGTCAAAATGGC</left_flank>
        <right_flank>GAAAAATGACGATTTTTGCCCCCTTTTTTAAACTAAAAACCGCTAAAAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGTTCGACTAAAAATGAGCTTAAATGACCTAAAATGAGTCTAGAAATTTGGAATTTTGGCTGAAAATGAGCCTAGAAGGCCGATTGCTCAGCTTAAAAAGCAATGTTTTTTTGTCATGAACAGTTGTCATTTTTTGGCGATTTTTCACGACGTTTTTTCAAATGTTTCAACGTTCAGGATGACAAAACAACGACGACGTCAACTAGCACCGCAAAGCCGCCTTCAGAATCCGCAGAAGCATCAAAACCGACGACGACGACGACGTCGTCATCTGGAGACGCGTCAGCTGCTCAGCAGGACGCTCTACAGACGCCGTCTACACCGAAAAAGAACAAGAAGGACAAGAAGAAGGAGAAGAAGAAGGAGGCGAAACAGACGCCACTCGGGAATAACAAGTTTTCGGCGTTGCTCAATGTTGATGCTTAGAATTTGTTGAGAAATTTCCAGATTTTTCTAGAAAATTTGAGCTTTTTTGAGGTTTTTTGAGTCAAAATGGCTGAAAAATGACGATTTTTGCCCCCTTTTTTAAACTAAAAACCGCTAAAAATGCACCAAATTGACCAAAAATAGTCGAATTGCTCAGCTTTAAATTTTCAACCGAAATTGTTGGATTTTTCTTGATTTTTCTAAAAATGCCTGGAATTTTCCATTTTTTGCCTATTTGGTTTATGGGGTCTCTAACCCTCATTTTTTTGGCTGAAAATCTGGAAAAATCTGAAACTTTTAAGCCGAAAATCTGGAATTTTTTTTTGCAAGTTTTCGGCTGAAAACCTGGAAATTTTGACCCAAAAACCCTTGGCTGAATTTTTCGCTGAATTGTTTTGAAAATTTTTTTTCAGATTTTTGGGCTGAAAATTTCAGATTTTCAGCCCTATTTTTCTGTATAGGCACTGATTAATTATTTTTTTTTCATCATTTTTGAGGGATTTTTCCCTAAAAAAAGTGCAATTTTCCATTTTTTTTTTGTGTTTTCGTGTTAAATGTACTAGCTCCGCCCA</canonical>
            <polymorphic>GATGTTCGACTAAAAATGAGCTTAAATGACCTAAAATGAGTCTAGAAATTTGGAATTTTGGCTGAAAATGAGCCTAGAAGGCCGATTGCTCAGCTTAAAAAGCAATGTTTTTTTGTCATGAACAGTTGTCATTTTTTGGCGATTTTTCACGACGTTTTTTCAAATGTTTCAACGTTCAGGATGACAAAACAACGACGACGTCAACTAGCACCGCAAAGCCGCCTTCAGAATCCGCAGAAGCATCAAAACCGACGACGACGACGACGTCGTCATCTGGAGACGCGTCAGCTGCTCAGCAGGACGCTCTACAGACGCCGTCTACACCGAAAAAGAACAAGAAGGACAAGAAGAAGGAGAAGAAGAAGGAGGCGAAACAGACGCCACTCGGGAATAACAAGTTTTCGGCGTTGCTCAATGTTGATGCTTAGAATTTGTTGAGAAATTTCCAGATTTTTCTAGAAAATTTGAGCTTTTTTGAGGTTTTTTGAGTCAAAATGGCYGAAAAATGACGATTTTTGCCCCCTTTTTTAAACTAAAAACCGCTAAAAATGCACCAAATTGACCAAAAATAGTCGAATTGCTCAGCTTTAAATTTTCAACCGAAATTGTTGGATTTTTCTTGATTTTTCTAAAAATGCCTGGAATTTTCCATTTTTTGCCTATTTGGTTTATGGGGTCTCTAACCCTCATTTTTTTGGCTGAAAATCTGGAAAAATCTGAAACTTTTAAGCCGAAAATCTGGAATTTTTTTTTGCAAGTTTTCGGCTGAAAACCTGGAAATTTTGACCCAAAAACCCTTGGCTGAATTTTTCGCTGAATTGTTTTGAAAATTTTTTTTCAGATTTTTGGGCTGAAAATTTCAGATTTTCAGCCCTATTTTTCTGTATAGGCACTGATTAATTATTTTTTTTTCATCATTTTTGAGGGATTTTTCCCTAAAAAAAGTGCAATTTTCCATTTTTTTTTTGTGTTTTCGTGTTAAATGTACTAGCTCCGCCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>181 125 120 113 87 70 49 41 36 35 32 29 21 20 12 11 9 9</canonical_bands>
                <polymorphic_bands>181 125 120 116 113 70 49 41 36 35 32 21 20 12 11 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACTCGGGAATAACAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>AAAATCAAGAAAAATCCAACAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CACTCGGGAATAACAAGTTTTCGGCGTTGCTCAATGTTGATGCTTAGAATTTGTTGAGAAATTTCCAGATTTTTCTAGAAAATTTGAGCTTTTTTGAGGTTTTTTGAGTCAAAATGGCTGAAAAATGACGATTTTTGCCCCCTTTTTTAAACTAAAAACCGCTAAAAATGCACCAAATTGACCAAAAATAGTCGAATTGCTCAGCTTTAAATTTTCAACCGAAATTGTTGGATTTTTCTTGATTTT</canonical_amplicon>
		<polymorphic_amplicon>CACTCGGGAATAACAAGTTTTCGGCGTTGCTCAATGTTGATGCTTAGAATTTGTTGAGAAATTTCCAGATTTTTCTAGAAAATTTGAGCTTTTTTGAGGTTTTTTGAGTCAAAATGGCYGAAAAATGACGATTTTTGCCCCCTTTTTTAAACTAAAAACCGCTAAAAATGCACCAAATTGACCAAAAATAGTCGAATTGCTCAGCTTTAAATTTTCAACCGAAATTGTTGGATTTTTCTTGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29008</snp_id>
        <super_contig>c004400720.Contig3</super_contig>
        <contig_pos>705</contig_pos>
        <strand></strand>
        <context>GGGGTCTCTA[A/G]CCCTCATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATGCCTGGAATTTTCCATTTTTTGCCTATTTGGTTTATGGGGTCTCTA</left_flank>
        <right_flank>CCCTCATTTTTTTGGCTGAAAATCTGGAAAAATCTGAAACTTTTAAGCCG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAAACAACGACGACGTCAACTAGCACCGCAAAGCCGCCTTCAGAATCCGCAGAAGCATCAAAACCGACGACGACGACGACGTCGTCATCTGGAGACGCGTCAGCTGCTCAGCAGGACGCTCTACAGACGCCGTCTACACCGAAAAAGAACAAGAAGGACAAGAAGAAGGAGAAGAAGAAGGAGGCGAAACAGACGCCACTCGGGAATAACAAGTTTTCGGCGTTGCTCAATGTTGATGCTTAGAATTTGTTGAGAAATTTCCAGATTTTTCTAGAAAATTTGAGCTTTTTTGAGGTTTTTTGAGTCAAAATGGCTGAAAAATGACGATTTTTGCCCCCTTTTTTAAACTAAAAACCGCTAAAAATGCACCAAATTGACCAAAAATAGTCGAATTGCTCAGCTTTAAATTTTCAACCGAAATTGTTGGATTTTTCTTGATTTTTCTAAAAATGCCTGGAATTTTCCATTTTTTGCCTATTTGGTTTATGGGGTCTCTAACCCTCATTTTTTTGGCTGAAAATCTGGAAAAATCTGAAACTTTTAAGCCGAAAATCTGGAATTTTTTTTTGCAAGTTTTCGGCTGAAAACCTGGAAATTTTGACCCAAAAACCCTTGGCTGAATTTTTCGCTGAATTGTTTTGAAAATTTTTTTTCAGATTTTTGGGCTGAAAATTTCAGATTTTCAGCCCTATTTTTCTGTATAGGCACTGATTAATTATTTTTTTTTCATCATTTTTGAGGGATTTTTCCCTAAAAAAAGTGCAATTTTCCATTTTTTTTTTGTGTTTTCGTGTTAAATGTACTAGCTCCGCCCACTCTTGGCTCCGCCCACCCCACATTTTTTGTCCCACACAGAAGAATTCCACAGTTTTTGTTCGTTCTCAGGTCAATCGATTTTTGTAGTTCCAGAACAATGTTTTTTTTTAGTTTTTCAGATGTTTTGGAAATTCTGGAAATCTGGAAATTTTGGAATTTTCAAAAAAAAAATTTTTTTTTGG</canonical>
            <polymorphic>ACAAAACAACGACGACGTCAACTAGCACCGCAAAGCCGCCTTCAGAATCCGCAGAAGCATCAAAACCGACGACGACGACGACGTCGTCATCTGGAGACGCGTCAGCTGCTCAGCAGGACGCTCTACAGACGCCGTCTACACCGAAAAAGAACAAGAAGGACAAGAAGAAGGAGAAGAAGAAGGAGGCGAAACAGACGCCACTCGGGAATAACAAGTTTTCGGCGTTGCTCAATGTTGATGCTTAGAATTTGTTGAGAAATTTCCAGATTTTTCTAGAAAATTTGAGCTTTTTTGAGGTTTTTTGAGTCAAAATGGCTGAAAAATGACGATTTTTGCCCCCTTTTTTAAACTAAAAACCGCTAAAAATGCACCAAATTGACCAAAAATAGTCGAATTGCTCAGCTTTAAATTTTCAACCGAAATTGTTGGATTTTTCTTGATTTTTCTAAAAATGCCTGGAATTTTCCATTTTTTGCCTATTTGGTTTATGGGGTCTCTARCCCTCATTTTTTTGGCTGAAAATCTGGAAAAATCTGAAACTTTTAAGCCGAAAATCTGGAATTTTTTTTTGCAAGTTTTCGGCTGAAAACCTGGAAATTTTGACCCAAAAACCCTTGGCTGAATTTTTCGCTGAATTGTTTTGAAAATTTTTTTTCAGATTTTTGGGCTGAAAATTTCAGATTTTCAGCCCTATTTTTCTGTATAGGCACTGATTAATTATTTTTTTTTCATCATTTTTGAGGGATTTTTCCCTAAAAAAAGTGCAATTTTCCATTTTTTTTTTGTGTTTTCGTGTTAAATGTACTAGCTCCGCCCACTCTTGGCTCCGCCCACCCCACATTTTTTGTCCCACACAGAAGAATTCCACAGTTTTTGTTCGTTCTCAGGTCAATCGATTTTTGTAGTTCCAGAACAATGTTTTTTTTTAGTTTTTCAGATGTTTTGGAAATTCTGGAAATCTGGAAATTTTGGAATTTTCAAAAAAAAAATTTTTTTTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAAAAATGCACCAAATTGAC</pcr_primer_p1>
		<pcr_primer_p2>CAAAATTTCCAGGTTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTAAAAATGCACCAAATTGACCAAAAATAGTCGAATTGCTCAGCTTTAAATTTTCAACCGAAATTGTTGGATTTTTCTTGATTTTTCTAAAAATGCCTGGAATTTTCCATTTTTTGCCTATTTGGTTTATGGGGTCTCTAACCCTCATTTTTTTGGCTGAAAATCTGGAAAAATCTGAAACTTTTAAGCCGAAAATCTGGAATTTTTTTTTGCAAGTTTTCGGCTGAAAACCTGGAAATTTTG</canonical_amplicon>
		<polymorphic_amplicon>CTAAAAATGCACCAAATTGACCAAAAATAGTCGAATTGCTCAGCTTTAAATTTTCAACCGAAATTGTTGGATTTTTCTTGATTTTTCTAAAAATGCCTGGAATTTTCCATTTTTTGCCTATTTGGTTTATGGGGTCTCTARCCCTCATTTTTTTGGCTGAAAATCTGGAAAAATCTGAAACTTTTAAGCCGAAAATCTGGAATTTTTTTTTGCAAGTTTTCGGCTGAAAACCTGGAAATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29009</snp_id>
        <super_contig>c004400720.Contig3</super_contig>
        <contig_pos>750</contig_pos>
        <strand></strand>
        <context>TGAAACTTTT[A/G]AGCCGAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCTAACCCTCATTTTTTTGGCTGAAAATCTGGAAAAATCTGAAACTTTT</left_flank>
        <right_flank>AGCCGAAAATCTGGAATTTTTTTTTGCAAGTTTTCGGCTGAAAACCTGGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCCGCAGAAGCATCAAAACCGACGACGACGACGACGTCGTCATCTGGAGACGCGTCAGCTGCTCAGCAGGACGCTCTACAGACGCCGTCTACACCGAAAAAGAACAAGAAGGACAAGAAGAAGGAGAAGAAGAAGGAGGCGAAACAGACGCCACTCGGGAATAACAAGTTTTCGGCGTTGCTCAATGTTGATGCTTAGAATTTGTTGAGAAATTTCCAGATTTTTCTAGAAAATTTGAGCTTTTTTGAGGTTTTTTGAGTCAAAATGGCTGAAAAATGACGATTTTTGCCCCCTTTTTTAAACTAAAAACCGCTAAAAATGCACCAAATTGACCAAAAATAGTCGAATTGCTCAGCTTTAAATTTTCAACCGAAATTGTTGGATTTTTCTTGATTTTTCTAAAAATGCCTGGAATTTTCCATTTTTTGCCTATTTGGTTTATGGGGTCTCTAACCCTCATTTTTTTGGCTGAAAATCTGGAAAAATCTGAAACTTTTAAGCCGAAAATCTGGAATTTTTTTTTGCAAGTTTTCGGCTGAAAACCTGGAAATTTTGACCCAAAAACCCTTGGCTGAATTTTTCGCTGAATTGTTTTGAAAATTTTTTTTCAGATTTTTGGGCTGAAAATTTCAGATTTTCAGCCCTATTTTTCTGTATAGGCACTGATTAATTATTTTTTTTTCATCATTTTTGAGGGATTTTTCCCTAAAAAAAGTGCAATTTTCCATTTTTTTTTTGTGTTTTCGTGTTAAATGTACTAGCTCCGCCCACTCTTGGCTCCGCCCACCCCACATTTTTTGTCCCACACAGAAGAATTCCACAGTTTTTGTTCGTTCTCAGGTCAATCGATTTTTGTAGTTCCAGAACAATGTTTTTTTTTAGTTTTTCAGATGTTTTGGAAATTCTGGAAATCTGGAAATTTTGGAATTTTCAAAAAAAAAATTTTTTTTTGGAAATTTCGAATTTTTCGATTTCTGGAAAATTCTGAAAATTTGAAA</canonical>
            <polymorphic>AATCCGCAGAAGCATCAAAACCGACGACGACGACGACGTCGTCATCTGGAGACGCGTCAGCTGCTCAGCAGGACGCTCTACAGACGCCGTCTACACCGAAAAAGAACAAGAAGGACAAGAAGAAGGAGAAGAAGAAGGAGGCGAAACAGACGCCACTCGGGAATAACAAGTTTTCGGCGTTGCTCAATGTTGATGCTTAGAATTTGTTGAGAAATTTCCAGATTTTTCTAGAAAATTTGAGCTTTTTTGAGGTTTTTTGAGTCAAAATGGCTGAAAAATGACGATTTTTGCCCCCTTTTTTAAACTAAAAACCGCTAAAAATGCACCAAATTGACCAAAAATAGTCGAATTGCTCAGCTTTAAATTTTCAACCGAAATTGTTGGATTTTTCTTGATTTTTCTAAAAATGCCTGGAATTTTCCATTTTTTGCCTATTTGGTTTATGGGGTCTCTAACCCTCATTTTTTTGGCTGAAAATCTGGAAAAATCTGAAACTTTTRAGCCGAAAATCTGGAATTTTTTTTTGCAAGTTTTCGGCTGAAAACCTGGAAATTTTGACCCAAAAACCCTTGGCTGAATTTTTCGCTGAATTGTTTTGAAAATTTTTTTTCAGATTTTTGGGCTGAAAATTTCAGATTTTCAGCCCTATTTTTCTGTATAGGCACTGATTAATTATTTTTTTTTCATCATTTTTGAGGGATTTTTCCCTAAAAAAAGTGCAATTTTCCATTTTTTTTTTGTGTTTTCGTGTTAAATGTACTAGCTCCGCCCACTCTTGGCTCCGCCCACCCCACATTTTTTGTCCCACACAGAAGAATTCCACAGTTTTTGTTCGTTCTCAGGTCAATCGATTTTTGTAGTTCCAGAACAATGTTTTTTTTTAGTTTTTCAGATGTTTTGGAAATTCTGGAAATCTGGAAATTTTGGAATTTTCAAAAAAAAAATTTTTTTTTGGAAATTTCGAATTTTTCGATTTCTGGAAAATTCTGAAAATTTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>300 249 171 138 82 60</canonical_bands>
                <polymorphic_bands>309 300 249 82 60</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGCCTATTTGGTTTATG</pcr_primer_p1>
		<pcr_primer_p2>TTAATCAGTGCCTATACAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGCCTATTTGGTTTATGGGGTCTCTAACCCTCATTTTTTTGGCTGAAAATCTGGAAAAATCTGAAACTTTTAAGCCGAAAATCTGGAATTTTTTTTTGCAAGTTTTCGGCTGAAAACCTGGAAATTTTGACCCAAAAACCCTTGGCTGAATTTTTCGCTGAATTGTTTTGAAAATTTTTTTTCAGATTTTTGGGCTGAAAATTTCAGATTTTCAGCCCTATTTTTCTGTATAGGCACTGATTAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGCCTATTTGGTTTATGGGGTCTCTAACCCTCATTTTTTTGGCTGAAAATCTGGAAAAATCTGAAACTTTTRAGCCGAAAATCTGGAATTTTTTTTTGCAAGTTTTCGGCTGAAAACCTGGAAATTTTGACCCAAAAACCCTTGGCTGAATTTTTCGCTGAATTGTTTTGAAAATTTTTTTTCAGATTTTTGGGCTGAAAATTTCAGATTTTCAGCCCTATTTTTCTGTATAGGCACTGATTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29010</snp_id>
        <super_contig>c004400720.Contig3</super_contig>
        <contig_pos>834</contig_pos>
        <strand></strand>
        <context>CTGAATTTTT[C/G]GCTGAATTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCGGCTGAAAACCTGGAAATTTTGACCCAAAAACCCTTGGCTGAATTTTT</left_flank>
        <right_flank>GCTGAATTGTTTTGAAAATTTTTTTTCAGATTTTTGGGCTGAAAATTTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCCGTCTACACCGAAAAAGAACAAGAAGGACAAGAAGAAGGAGAAGAAGAAGGAGGCGAAACAGACGCCACTCGGGAATAACAAGTTTTCGGCGTTGCTCAATGTTGATGCTTAGAATTTGTTGAGAAATTTCCAGATTTTTCTAGAAAATTTGAGCTTTTTTGAGGTTTTTTGAGTCAAAATGGCTGAAAAATGACGATTTTTGCCCCCTTTTTTAAACTAAAAACCGCTAAAAATGCACCAAATTGACCAAAAATAGTCGAATTGCTCAGCTTTAAATTTTCAACCGAAATTGTTGGATTTTTCTTGATTTTTCTAAAAATGCCTGGAATTTTCCATTTTTTGCCTATTTGGTTTATGGGGTCTCTAACCCTCATTTTTTTGGCTGAAAATCTGGAAAAATCTGAAACTTTTAAGCCGAAAATCTGGAATTTTTTTTTGCAAGTTTTCGGCTGAAAACCTGGAAATTTTGACCCAAAAACCCTTGGCTGAATTTTTCGCTGAATTGTTTTGAAAATTTTTTTTCAGATTTTTGGGCTGAAAATTTCAGATTTTCAGCCCTATTTTTCTGTATAGGCACTGATTAATTATTTTTTTTTCATCATTTTTGAGGGATTTTTCCCTAAAAAAAGTGCAATTTTCCATTTTTTTTTTGTGTTTTCGTGTTAAATGTACTAGCTCCGCCCACTCTTGGCTCCGCCCACCCCACATTTTTTGTCCCACACAGAAGAATTCCACAGTTTTTGTTCGTTCTCAGGTCAATCGATTTTTGTAGTTCCAGAACAATGTTTTTTTTTAGTTTTTCAGATGTTTTGGAAATTCTGGAAATCTGGAAATTTTGGAATTTTCAAAAAAAAAATTTTTTTTTGGAAATTTCGAATTTTTCGATTTCTGGAAAATTCTGAAAATTTGAAAAAAATTTTTTTTGAAACCCAAACATTATTATTATTATTGTCCTAATTTCTCTAATCTCTCTTCTCTCTCTCTCTCTCCATCATT</canonical>
            <polymorphic>CGCCGTCTACACCGAAAAAGAACAAGAAGGACAAGAAGAAGGAGAAGAAGAAGGAGGCGAAACAGACGCCACTCGGGAATAACAAGTTTTCGGCGTTGCTCAATGTTGATGCTTAGAATTTGTTGAGAAATTTCCAGATTTTTCTAGAAAATTTGAGCTTTTTTGAGGTTTTTTGAGTCAAAATGGCTGAAAAATGACGATTTTTGCCCCCTTTTTTAAACTAAAAACCGCTAAAAATGCACCAAATTGACCAAAAATAGTCGAATTGCTCAGCTTTAAATTTTCAACCGAAATTGTTGGATTTTTCTTGATTTTTCTAAAAATGCCTGGAATTTTCCATTTTTTGCCTATTTGGTTTATGGGGTCTCTAACCCTCATTTTTTTGGCTGAAAATCTGGAAAAATCTGAAACTTTTAAGCCGAAAATCTGGAATTTTTTTTTGCAAGTTTTCGGCTGAAAACCTGGAAATTTTGACCCAAAAACCCTTGGCTGAATTTTTSGCTGAATTGTTTTGAAAATTTTTTTTCAGATTTTTGGGCTGAAAATTTCAGATTTTCAGCCCTATTTTTCTGTATAGGCACTGATTAATTATTTTTTTTTCATCATTTTTGAGGGATTTTTCCCTAAAAAAAGTGCAATTTTCCATTTTTTTTTTGTGTTTTCGTGTTAAATGTACTAGCTCCGCCCACTCTTGGCTCCGCCCACCCCACATTTTTTGTCCCACACAGAAGAATTCCACAGTTTTTGTTCGTTCTCAGGTCAATCGATTTTTGTAGTTCCAGAACAATGTTTTTTTTTAGTTTTTCAGATGTTTTGGAAATTCTGGAAATCTGGAAATTTTGGAATTTTCAAAAAAAAAATTTTTTTTTGGAAATTTCGAATTTTTCGATTTCTGGAAAATTCTGAAAATTTGAAAAAAATTTTTTTTGAAACCCAAACATTATTATTATTATTGTCCTAATTTCTCTAATCTCTCTTCTCTCTCTCTCTCTCCATCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGCCTATTTGGTTTATG</pcr_primer_p1>
		<pcr_primer_p2>TTAATCAGTGCCTATACAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGCCTATTTGGTTTATGGGGTCTCTAACCCTCATTTTTTTGGCTGAAAATCTGGAAAAATCTGAAACTTTTAAGCCGAAAATCTGGAATTTTTTTTTGCAAGTTTTCGGCTGAAAACCTGGAAATTTTGACCCAAAAACCCTTGGCTGAATTTTTCGCTGAATTGTTTTGAAAATTTTTTTTCAGATTTTTGGGCTGAAAATTTCAGATTTTCAGCCCTATTTTTCTGTATAGGCACTGATTAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGCCTATTTGGTTTATGGGGTCTCTAACCCTCATTTTTTTGGCTGAAAATCTGGAAAAATCTGAAACTTTTAAGCCGAAAATCTGGAATTTTTTTTTGCAAGTTTTCGGCTGAAAACCTGGAAATTTTGACCCAAAAACCCTTGGCTGAATTTTTSGCTGAATTGTTTTGAAAATTTTTTTTCAGATTTTTGGGCTGAAAATTTCAGATTTTCAGCCCTATTTTTCTGTATAGGCACTGATTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29011</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>57710</contig_pos>
        <strand>+</strand>
        <context>CAGAGCAGAT[A/G]ATTTCTCACT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCCGAAACCTCATCTTCATTTTTTAAGTTTGTTTAGTTACAGAGCAGAT</left_flank>
        <right_flank>ATTTCTCACTAATTATATTGATTAAGGCCTAAAAACCTATTTTTTCGAAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTGACTATTTCAGTTTTGAAGTAAACTATCTGGAACAGTGAATATTTTTTTGTCTTAAATTCGTGAACCGCGTAGCTCGTTCGTTAGTTCCTCAACTCCCAACTTTGAAAGCAACTTCAGTTTCCATTTTTCAGTTTCAGATAGTTCAGTTATAATTTTAATTTTTAAAATTTTCTATTATAACGTTTTCATGATACTCGCAAAATCAAAAATCAAGTTTCCAAACAGTGAGCTTGGAAAATGTGTTTGGAAAAAAGGAACATTCAAATGTTTACTGTCTCATCAAGCTTCAAAATTCTCAAATATTCCAAAAATTTGATCGACCATGAAATGTAGTTCCTAATAGAACGCCATCCAATACTTGCACTTTGAGCTCAACTATCTGGACTTAAGTGTAAAATGTTACAAGTCAAATCACTATCAAATAAAAAATGGTCCCAAAAATAATCCGAAACCTCATCTTCATTTTTTAAGTTTGTTTAGTTACAGAGCAGATGATTTCTCACTAATTATATTGATTAAGGCCTAAAAACCTATTTTTTCGAAAATTTGAAGATGATCTTATTAAACAGACAAGGTCCAACATTTTGTGATTGAAATTATCTATGCTTTAAAATACTTTTAATTTTGTCGATTTTTAGGTCTAAAATATTATATACTAACAAGCCAGTCGCTCAACAATTACTTGTGTTTAAAAAAAAGCTTGTTAGTGAATAAGCTTGGAGAACATCTTAAAAAAAAGAATTCTCTCATTTTCACTGTTTCATCAAGTTTTTGAATACTCGGATACTCAAAAAATTCAATCCATCAATACCAATACTACCATCAAATGAGCTACATGGTCGTCGACTGCTCTGTTGTATGATAGTTGCACCTTGACAGTTATTGCCTCAATCTGTTCATTGCAGTTCCTTGGACGTGTAGACAAAATTCATCATCATGTCGCATAGCTACCGTGTGTACCGTAGTAACCGGTGCTCGCCGACCGGAAAAGGGG</canonical>
            <polymorphic>TTTCTGACTATTTCAGTTTTGAAGTAAACTATCTGGAACAGTGAATATTTTTTTGTCTTAAATTCGTGAACCGCGTAGCTCGTTCGTTAGTTCCTCAACTCCCAACTTTGAAAGCAACTTCAGTTTCCATTTTTCAGTTTCAGATAGTTCAGTTATAATTTTAATTTTTAAAATTTTCTATTATAACGTTTTCATGATACTCGCAAAATCAAAAATCAAGTTTCCAAACAGTGAGCTTGGAAAATGTGTTTGGAAAAAAGGAACATTCAAATGTTTACTGTCTCATCAAGCTTCAAAATTCTCAAATATTCCAAAAATTTGATCGACCATGAAATGTAGTTCCTAATAGAACGCCATCCAATACTTGCACTTTGAGCTCAACTATCTGGACTTAAGTGTAAAATGTTACAAGTCAAATCACTATCAAATAAAAAATGGTCCCAAAAATAATCCGAAACCTCATCTTCATTTTTTAAGTTTGTTTAGTTACAGAGCAGATRATTTCTCACTAATTATATTGATTAAGGCCTAAAAACCTATTTTTTCGAAAATTTGAAGATGATCTTATTAAACAGACAAGGTCCAACATTTTGTGATTGAAATTATCTATGCTTTAAAATACTTTTAATTTTGTCGATTTTTAGGTCTAAAATATTATATACTAACAAGCCAGTCGCTCAACAATTACTTGTGTTTAAAAAAAAGCTTGTTAGTGAATAAGCTTGGAGAACATCTTAAAAAAAAGAATTCTCTCATTTTCACTGTTTCATCAAGTTTTTGAATACTCGGATACTCAAAAAATTCAATCCATCAATACCAATACTACCATCAAATGAGCTACATGGTCGTCGACTGCTCTGTTGTATGATAGTTGCACCTTGACAGTTATTGCCTCAATCTGTTCATTGCAGTTCCTTGGACGTGTAGACAAAATTCATCATCATGTCGCATAGCTACCGTGTGTACCGTAGTAACCGGTGCTCGCCGACCGGAAAAGGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTACAAGTCAAATCACTATCAA</pcr_primer_p1>
		<pcr_primer_p2>TTTAGACCTAAAAATCGACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTTACAAGTCAAATCACTATCAAATAAAAAATGGTCCCAAAAATAATCCGAAACCTCATCTTCATTTTTTAAGTTTGTTTAGTTACAGAGCAGATGATTTCTCACTAATTATATTGATTAAGGCCTAAAAACCTATTTTTTCGAAAATTTGAAGATGATCTTATTAAACAGACAAGGTCCAACATTTTGTGATTGAAATTATCTATGCTTTAAAATACTTTTAATTTTGTCGATTTTTAGGTCTAAA</canonical_amplicon>
		<polymorphic_amplicon>TGTTACAAGTCAAATCACTATCAAATAAAAAATGGTCCCAAAAATAATCCGAAACCTCATCTTCATTTTTTAAGTTTGTTTAGTTACAGAGCAGATRATTTCTCACTAATTATATTGATTAAGGCCTAAAAACCTATTTTTTCGAAAATTTGAAGATGATCTTATTAAACAGACAAGGTCCAACATTTTGTGATTGAAATTATCTATGCTTTAAAATACTTTTAATTTTGTCGATTTTTAGGTCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29012</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>57770</contig_pos>
        <strand>+</strand>
        <context>AATTTGAAGA[G/T]GATCTTATTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAATTATATTGATTAAGGCCTAAAAACCTATTTTTTCGAAAATTTGAAGA</left_flank>
        <right_flank>GATCTTATTAAACAGACAAGGTCCAACATTTTGTGATTGAAATTATCTAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCGTGAACCGCGTAGCTCGTTCGTTAGTTCCTCAACTCCCAACTTTGAAAGCAACTTCAGTTTCCATTTTTCAGTTTCAGATAGTTCAGTTATAATTTTAATTTTTAAAATTTTCTATTATAACGTTTTCATGATACTCGCAAAATCAAAAATCAAGTTTCCAAACAGTGAGCTTGGAAAATGTGTTTGGAAAAAAGGAACATTCAAATGTTTACTGTCTCATCAAGCTTCAAAATTCTCAAATATTCCAAAAATTTGATCGACCATGAAATGTAGTTCCTAATAGAACGCCATCCAATACTTGCACTTTGAGCTCAACTATCTGGACTTAAGTGTAAAATGTTACAAGTCAAATCACTATCAAATAAAAAATGGTCCCAAAAATAATCCGAAACCTCATCTTCATTTTTTAAGTTTGTTTAGTTACAGAGCAGATGATTTCTCACTAATTATATTGATTAAGGCCTAAAAACCTATTTTTTCGAAAATTTGAAGATGATCTTATTAAACAGACAAGGTCCAACATTTTGTGATTGAAATTATCTATGCTTTAAAATACTTTTAATTTTGTCGATTTTTAGGTCTAAAATATTATATACTAACAAGCCAGTCGCTCAACAATTACTTGTGTTTAAAAAAAAGCTTGTTAGTGAATAAGCTTGGAGAACATCTTAAAAAAAAGAATTCTCTCATTTTCACTGTTTCATCAAGTTTTTGAATACTCGGATACTCAAAAAATTCAATCCATCAATACCAATACTACCATCAAATGAGCTACATGGTCGTCGACTGCTCTGTTGTATGATAGTTGCACCTTGACAGTTATTGCCTCAATCTGTTCATTGCAGTTCCTTGGACGTGTAGACAAAATTCATCATCATGTCGCATAGCTACCGTGTGTACCGTAGTAACCGGTGCTCGCCGACCGGAAAAGGGGGTACGGTAGCCACAAAAATGTGCAAACAACAATCGAATGTGCACCGCAAAAAAATGCGTT</canonical>
            <polymorphic>AATTCGTGAACCGCGTAGCTCGTTCGTTAGTTCCTCAACTCCCAACTTTGAAAGCAACTTCAGTTTCCATTTTTCAGTTTCAGATAGTTCAGTTATAATTTTAATTTTTAAAATTTTCTATTATAACGTTTTCATGATACTCGCAAAATCAAAAATCAAGTTTCCAAACAGTGAGCTTGGAAAATGTGTTTGGAAAAAAGGAACATTCAAATGTTTACTGTCTCATCAAGCTTCAAAATTCTCAAATATTCCAAAAATTTGATCGACCATGAAATGTAGTTCCTAATAGAACGCCATCCAATACTTGCACTTTGAGCTCAACTATCTGGACTTAAGTGTAAAATGTTACAAGTCAAATCACTATCAAATAAAAAATGGTCCCAAAAATAATCCGAAACCTCATCTTCATTTTTTAAGTTTGTTTAGTTACAGAGCAGATGATTTCTCACTAATTATATTGATTAAGGCCTAAAAACCTATTTTTTCGAAAATTTGAAGAKGATCTTATTAAACAGACAAGGTCCAACATTTTGTGATTGAAATTATCTATGCTTTAAAATACTTTTAATTTTGTCGATTTTTAGGTCTAAAATATTATATACTAACAAGCCAGTCGCTCAACAATTACTTGTGTTTAAAAAAAAGCTTGTTAGTGAATAAGCTTGGAGAACATCTTAAAAAAAAGAATTCTCTCATTTTCACTGTTTCATCAAGTTTTTGAATACTCGGATACTCAAAAAATTCAATCCATCAATACCAATACTACCATCAAATGAGCTACATGGTCGTCGACTGCTCTGTTGTATGATAGTTGCACCTTGACAGTTATTGCCTCAATCTGTTCATTGCAGTTCCTTGGACGTGTAGACAAAATTCATCATCATGTCGCATAGCTACCGTGTGTACCGTAGTAACCGGTGCTCGCCGACCGGAAAAGGGGGTACGGTAGCCACAAAAATGTGCAAACAACAATCGAATGTGCACCGCAAAAAAATGCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTACAAGTCAAATCACTATCAA</pcr_primer_p1>
		<pcr_primer_p2>TTTAGACCTAAAAATCGACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTTACAAGTCAAATCACTATCAAATAAAAAATGGTCCCAAAAATAATCCGAAACCTCATCTTCATTTTTTAAGTTTGTTTAGTTACAGAGCAGATGATTTCTCACTAATTATATTGATTAAGGCCTAAAAACCTATTTTTTCGAAAATTTGAAGATGATCTTATTAAACAGACAAGGTCCAACATTTTGTGATTGAAATTATCTATGCTTTAAAATACTTTTAATTTTGTCGATTTTTAGGTCTAAA</canonical_amplicon>
		<polymorphic_amplicon>TGTTACAAGTCAAATCACTATCAAATAAAAAATGGTCCCAAAAATAATCCGAAACCTCATCTTCATTTTTTAAGTTTGTTTAGTTACAGAGCAGATGATTTCTCACTAATTATATTGATTAAGGCCTAAAAACCTATTTTTTCGAAAATTTGAAGAKGATCTTATTAAACAGACAAGGTCCAACATTTTGTGATTGAAATTATCTATGCTTTAAAATACTTTTAATTTTGTCGATTTTTAGGTCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29013</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>59260</contig_pos>
        <strand>+</strand>
        <context>AAAGGAGCTA[A/G]CCTATAATTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTAATTGGCTCATTTGAGTACATGAAAGGGATACGGTGAAAAGGAGCTA</left_flank>
        <right_flank>CCTATAATTATAAATTTTCCAAAATCAGTCAAAGAGATTAGACCTAATTA</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCCGGTCGCCGCGTGAATAGCTGGCCATGAACCAAACCGTCCAATCTTACGGAAATAAGCTCAGCCAACCTACCCATCCCAGAAGTACCGTAACCAAAAAACTGCGGTCATGTTTCCGACAGCCTTGTTATATAAACCTTCCTGAGAGGTCAAACCTATGCCACTACTGGGAAAACTACACCGAAAGCTAAAAATATGATAAATCAAATCGCGCCGAAGGCGCACCAGCCAGCTTTTTTAAGATCTCGAGGCGCGGCAAACAAGCTGGTTCCATCTAAAACTTGAGCTGGGTAATGAAATAATTTCTCTGTTCCACATAGTTTTCAAAATGGGAACTATTTTTAAGCAGTAATTGAACCATACCAATTCGATCGAAAATCATTACGTCTATCCTAATTCTGTTTAGAAATTAAAAGTGCTGAGTCACTACTGGCTGAGCTACACTGCCCTAATTGGCTCATTTGAGTACATGAAAGGGATACGGTGAAAAGGAGCTAACCTATAATTATAAATTTTCCAAAATCAGTCAAAGAGATTAGACCTAATTAGATTATTCAAAACCAAAGAAACGTCATCACCTCTCCACCAATCGATGAGCAGCAAAGGAGAGAGAAAAATAAGAAAAAAGGGAAGAGGGGAACGATGCTCTTTCTCTCTTTCTCTGTATGCGTGAGTTTTCTTATTTCCCCCCATCTTCTTTTTTTTCCTTGGAGCTCCTGACTCTCACTTTTTCTTCTTCTCCATCTTCTCATCATTTTTTCTTCTTCTTTCTTTTCCAACGTCTTCTTCTTCTTCTAGTCTATATTTATGCGAAGTATGTATAGCATTTTTATGTGTATGTGTCTCTTTTTGCTCTCTCTTTCTTTTCTCCTACTTGTCAAAGGAATTCGTGTCCTTTGAGCTGGACACATGAATTCTTGATAAATTGATGAGAAGATGAAGAAGAAGAACTTTTGATGAAAGGAGAGAGAGATATCTTCTTTTTCTCGCTCACATCG</canonical>
            <polymorphic>GATCCGGTCGCCGCGTGAATAGCTGGCCATGAACCAAACCGTCCAATCTTACGGAAATAAGCTCAGCCAACCTACCCATCCCAGAAGTACCGTAACCAAAAAACTGCGGTCATGTTTCCGACAGCCTTGTTATATAAACCTTCCTGAGAGGTCAAACCTATGCCACTACTGGGAAAACTACACCGAAAGCTAAAAATATGATAAATCAAATCGCGCCGAAGGCGCACCAGCCAGCTTTTTTAAGATCTCGAGGCGCGGCAAACAAGCTGGTTCCATCTAAAACTTGAGCTGGGTAATGAAATAATTTCTCTGTTCCACATAGTTTTCAAAATGGGAACTATTTTTAAGCAGTAATTGAACCATACCAATTCGATCGAAAATCATTACGTCTATCCTAATTCTGTTTAGAAATTAAAAGTGCTGAGTCACTACTGGCTGAGCTACACTGCCCTAATTGGCTCATTTGAGTACATGAAAGGGATACGGTGAAAAGGAGCTARCCTATAATTATAAATTTTCCAAAATCAGTCAAAGAGATTAGACCTAATTAGATTATTCAAAACCAAAGAAACGTCATCACCTCTCCACCAATCGATGAGCAGCAAAGGAGAGAGAAAAATAAGAAAAAAGGGAAGAGGGGAACGATGCTCTTTCTCTCTTTCTCTGTATGCGTGAGTTTTCTTATTTCCCCCCATCTTCTTTTTTTTCCTTGGAGCTCCTGACTCTCACTTTTTCTTCTTCTCCATCTTCTCATCATTTTTTCTTCTTCTTTCTTTTCCAACGTCTTCTTCTTCTTCTAGTCTATATTTATGCGAAGTATGTATAGCATTTTTATGTGTATGTGTCTCTTTTTGCTCTCTCTTTCTTTTCTCCTACTTGTCAAAGGAATTCGTGTCCTTTGAGCTGGACACATGAATTCTTGATAAATTGATGAGAAGATGAAGAAGAAGAACTTTTGATGAAAGGAGAGAGAGATATCTTCTTTTTCTCGCTCACATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAATGGGAACTATTTTTAAG</pcr_primer_p1>
		<pcr_primer_p2>ACGTTTCTTTGGTTTTGAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCAAAATGGGAACTATTTTTAAGCAGTAATTGAACCATACCAATTCGATCGAAAATCATTACGTCTATCCTAATTCTGTTTAGAAATTAAAAGTGCTGAGTCACTACTGGCTGAGCTACACTGCCCTAATTGGCTCATTTGAGTACATGAAAGGGATACGGTGAAAAGGAGCTAACCTATAATTATAAATTTTCCAAAATCAGTCAAAGAGATTAGACCTAATTAGATTATTCAAAACCAAAGAAACGT</canonical_amplicon>
		<polymorphic_amplicon>TCAAAATGGGAACTATTTTTAAGCAGTAATTGAACCATACCAATTCGATCGAAAATCATTACGTCTATCCTAATTCTGTTTAGAAATTAAAAGTGCTGAGTCACTACTGGCTGAGCTACACTGCCCTAATTGGCTCATTTGAGTACATGAAAGGGATACGGTGAAAAGGAGCTARCCTATAATTATAAATTTTCCAAAATCAGTCAAAGAGATTAGACCTAATTAGATTATTCAAAACCAAAGAAACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29014</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>105993</contig_pos>
        <strand>+</strand>
        <context>GGGCCCGGAT[A/G]KGGCCGGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACATATTGGTTCTAAAAGGAACTATAATAAAGCCCGTCAGGGCCCGGAT</left_flank>
        <right_flank>TGGCCGGTTTTCATTCTTACATCTGACTAACTAGGAACGTTTTACCAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTGTCTCTTATAACAACTAAGATTATTGAGCTCAAATCAAAAGTTAAAAAGCCCTTCTACTAGAGGTATTTCGGTGGTATCACCTCCTTGTAACATAGCACAAAGAAGGATAAGAGAAGCTAGAGTAAGAACGAACCATCTAATGAGACTTGAAAACGGGTAGGGCACTGGCGGGCCCTTCCATTGCGTCTTTTAGAATCAATACCTCGTGAACTAGTTTTTATATGATACAACTCGACAAGCAATACAGAATAATACTATTTGGAAAATAATACCCTGTCTGTGAACTAAGTTACATTCTATAAGACTGCCCATCCGTTCCGAGCCGGGCCCAGTCTGTGTCGTCGACTCGCCATAACTTCGTTCATAAACATGATACAGTTTTCCGAGTATTATCATTTCGTAGTACTCGTCGAGTTCTGCCGTATCTAATTTATAATTGGTCAAAACATATTGGTTCTAAAAGGAACTATAATAAAGCCCGTCAGGGCCCGGATATGGCCGGTTTTCATTCTTACATCTGACTAACTAGGAACGTTTTACCAAAACCAAGCACCGTACCAAGCTTTACGGAAGGGCACCTGAAAAAAGAGCTGCAGTAGAAATTCTGCTGCTTCATAAGATCCACAAATCGCTTAATAGACAAAATCGCTTAATAGACAAAAGCTAGACAAATCGCTTAACAATGCTTAAACGGTACGGCTAGTTGGCGAGCGTCAAAAATAGGGTCTTTCCGTGATTAAATAGCTGCGATAACAGAAGAAGAACAGTTTTCTGGAAAATGAGAGAAAATTGGTGAAAGATACGTACTTATTAGAAGAGAAATGAAAGAAGTAACCTAGATTCTTATATACGTCTTATTTATCGTGATAAAAGAGATGCAGGCATAAAGAGTCTCTAACGCATTATTAGGGACAAATCAATAATTCTAAGGTTAAAAAAACGATCTAAAAGGAAGAGTGACGACCTAAAAGAAAGAGGGACGATCACAACTAAAT</canonical>
            <polymorphic>TGGTGTCTCTTATAACAACTAAGATTATTGAGCTCAAATCAAAAGTTAAAAAGCCCTTCTACTAGAGGTATTTCGGTGGTATCACCTCCTTGTAACATAGCACAAAGAAGGATAAGAGAAGCTAGAGTAAGAACGAACCATCTAATGAGACTTGAAAACGGGTAGGGCACTGGCGGGCCCTTCCATTGCGTCTTTTAGAATCAATACCTCGTGAACTAGTTTTTATATGATACAACTCGACAAGCAATACAGAATAATACTATTTGGAAAATAATACCCTGTCTGTGAACTAAGTTACATTCTATAAGACTGCCCATCCGTTCCGAGCCGGGCCCAGTCTGTGTCGTCGACTCGCCATAACTTCGTTCATAAACATGATACAGTTTTCCGAGTATTATCATTTCGTAGTACTCGTCGAGTTCTGCCGTATCTAATTTATAATTGGTCAAAACATATTGGTTCTAAAAGGAACTATAATAAAGCCCGTCAGGGCCCGGATRTGGCCGGTTTTCATTCTTACATCTGACTAACTAGGAACGTTTTACCAAAACCAAGCACCGTACCAAGCTTTACGGAAGGGCACCTGAAAAAAGAGCTGCAGTAGAAATTCTGCTGCTTCATAAGATCCACAAATCGCTTAATAGACAAAATCGCTTAATAGACAAAAGCTAGACAAATCGCTTAACAATGCTTAAACGGTACGGCTAGTTGGCGAGCGTCAAAAATAGGGTCTTTCCGTGATTAAATAGCTGCGATAACAGAAGAAGAACAGTTTTCTGGAAAATGAGAGAAAATTGGTGAAAGATACGTACTTATTAGAAGAGAAATGAAAGAAGTAACCTAGATTCTTATATACGTCTTATTTATCGTGATAAAAGAGATGCAGGCATAAAGAGTCTCTAACGCATTATTAGGGACAAATCAATAATTCTAAGGTTAAAAAAACGATCTAAAAGGAAGAGTGACGACCTAAAAGAAAGAGGGACGATCACAACTAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCGTATCTAATTTATAATTGGTC</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGTCTATTAAGCGATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GCCGTATCTAATTTATAATTGGTCAAAACATATTGGTTCTAAAAGGAACTATAATAAAGCCCGTCAGGGCCCGGATATGGCCGGTTTTCATTCTTACATCTGACTAACTAGGAACGTTTTACCAAAACCAAGCACCGTACCAAGCTTTACGGAAGGGCACCTGAAAAAAGAGCTGCAGTAGAAATTCTGCTGCTTCATAAGATCCACAAATCGCTTAATAGACAAAATCGCTTAATAGACAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GCCGTATCTAATTTATAATTGGTCAAAACATATTGGTTCTAAAAGGAACTATAATAAAGCCCGTCAGGGCCCGGATRTGGCCGGTTTTCATTCTTACATCTGACTAACTAGGAACGTTTTACCAAAACCAAGCACCGTACCAAGCTTTACGGAAGGGCACCTGAAAAAAGAGCTGCAGTAGAAATTCTGCTGCTTCATAAGATCCACAAATCGCTTAATAGACAAAATCGCTTAATAGACAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29015</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>105994</contig_pos>
        <strand>+</strand>
        <context>GGCCCGGATR[G/T]GGCCGGTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACATATTGGTTCTAAAAGGAACTATAATAAAGCCCGTCAGGGCCCGGATA</left_flank>
        <right_flank>GGCCGGTTTTCATTCTTACATCTGACTAACTAGGAACGTTTTACCAAAAC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTGTCTCTTATAACAACTAAGATTATTGAGCTCAAATCAAAAGTTAAAAAGCCCTTCTACTAGAGGTATTTCGGTGGTATCACCTCCTTGTAACATAGCACAAAGAAGGATAAGAGAAGCTAGAGTAAGAACGAACCATCTAATGAGACTTGAAAACGGGTAGGGCACTGGCGGGCCCTTCCATTGCGTCTTTTAGAATCAATACCTCGTGAACTAGTTTTTATATGATACAACTCGACAAGCAATACAGAATAATACTATTTGGAAAATAATACCCTGTCTGTGAACTAAGTTACATTCTATAAGACTGCCCATCCGTTCCGAGCCGGGCCCAGTCTGTGTCGTCGACTCGCCATAACTTCGTTCATAAACATGATACAGTTTTCCGAGTATTATCATTTCGTAGTACTCGTCGAGTTCTGCCGTATCTAATTTATAATTGGTCAAAACATATTGGTTCTAAAAGGAACTATAATAAAGCCCGTCAGGGCCCGGATATGGCCGGTTTTCATTCTTACATCTGACTAACTAGGAACGTTTTACCAAAACCAAGCACCGTACCAAGCTTTACGGAAGGGCACCTGAAAAAAGAGCTGCAGTAGAAATTCTGCTGCTTCATAAGATCCACAAATCGCTTAATAGACAAAATCGCTTAATAGACAAAAGCTAGACAAATCGCTTAACAATGCTTAAACGGTACGGCTAGTTGGCGAGCGTCAAAAATAGGGTCTTTCCGTGATTAAATAGCTGCGATAACAGAAGAAGAACAGTTTTCTGGAAAATGAGAGAAAATTGGTGAAAGATACGTACTTATTAGAAGAGAAATGAAAGAAGTAACCTAGATTCTTATATACGTCTTATTTATCGTGATAAAAGAGATGCAGGCATAAAGAGTCTCTAACGCATTATTAGGGACAAATCAATAATTCTAAGGTTAAAAAAACGATCTAAAAGGAAGAGTGACGACCTAAAAGAAAGAGGGACGATCACAACTAAATG</canonical>
            <polymorphic>GGTGTCTCTTATAACAACTAAGATTATTGAGCTCAAATCAAAAGTTAAAAAGCCCTTCTACTAGAGGTATTTCGGTGGTATCACCTCCTTGTAACATAGCACAAAGAAGGATAAGAGAAGCTAGAGTAAGAACGAACCATCTAATGAGACTTGAAAACGGGTAGGGCACTGGCGGGCCCTTCCATTGCGTCTTTTAGAATCAATACCTCGTGAACTAGTTTTTATATGATACAACTCGACAAGCAATACAGAATAATACTATTTGGAAAATAATACCCTGTCTGTGAACTAAGTTACATTCTATAAGACTGCCCATCCGTTCCGAGCCGGGCCCAGTCTGTGTCGTCGACTCGCCATAACTTCGTTCATAAACATGATACAGTTTTCCGAGTATTATCATTTCGTAGTACTCGTCGAGTTCTGCCGTATCTAATTTATAATTGGTCAAAACATATTGGTTCTAAAAGGAACTATAATAAAGCCCGTCAGGGCCCGGATAKGGCCGGTTTTCATTCTTACATCTGACTAACTAGGAACGTTTTACCAAAACCAAGCACCGTACCAAGCTTTACGGAAGGGCACCTGAAAAAAGAGCTGCAGTAGAAATTCTGCTGCTTCATAAGATCCACAAATCGCTTAATAGACAAAATCGCTTAATAGACAAAAGCTAGACAAATCGCTTAACAATGCTTAAACGGTACGGCTAGTTGGCGAGCGTCAAAAATAGGGTCTTTCCGTGATTAAATAGCTGCGATAACAGAAGAAGAACAGTTTTCTGGAAAATGAGAGAAAATTGGTGAAAGATACGTACTTATTAGAAGAGAAATGAAAGAAGTAACCTAGATTCTTATATACGTCTTATTTATCGTGATAAAAGAGATGCAGGCATAAAGAGTCTCTAACGCATTATTAGGGACAAATCAATAATTCTAAGGTTAAAAAAACGATCTAAAAGGAAGAGTGACGACCTAAAAGAAAGAGGGACGATCACAACTAAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCGTATCTAATTTATAATTGGTC</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGTCTATTAAGCGATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GCCGTATCTAATTTATAATTGGTCAAAACATATTGGTTCTAAAAGGAACTATAATAAAGCCCGTCAGGGCCCGGATATGGCCGGTTTTCATTCTTACATCTGACTAACTAGGAACGTTTTACCAAAACCAAGCACCGTACCAAGCTTTACGGAAGGGCACCTGAAAAAAGAGCTGCAGTAGAAATTCTGCTGCTTCATAAGATCCACAAATCGCTTAATAGACAAAATCGCTTAATAGACAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GCCGTATCTAATTTATAATTGGTCAAAACATATTGGTTCTAAAAGGAACTATAATAAAGCCCGTCAGGGCCCGGATAKGGCCGGTTTTCATTCTTACATCTGACTAACTAGGAACGTTTTACCAAAACCAAGCACCGTACCAAGCTTTACGGAAGGGCACCTGAAAAAAGAGCTGCAGTAGAAATTCTGCTGCTTCATAAGATCCACAAATCGCTTAATAGACAAAATCGCTTAATAGACAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29016</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>128676</contig_pos>
        <strand>+</strand>
        <context>ATTTTTAGAT[G/T]TTTTTAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGAT</left_flank>
        <right_flank>TTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGAAAACAAACGAAAAATTAGCAAAAAATGGTCCGGTCCATTTTTTGGTCCGTTTTTGGATCATTTTTGATGCGCTTTCGGCCCGTTTTTGACCTGTATTACTTCTATTTTTATCAATTCACAGATTTTCAAATCAAGTAGTTTTTAACTGCTTATTAACTTTTATAACATCATTCCAGTTTGCCGAAACATTAGAGAAAACTGCAAGTATGAATTTAACATATATTATAGAGCAATTTGTACCTATTTTTGCTGTTTCATGAGCTGATTTTTGATTTCTGTACCAAACAAAAATTTTTTATCAGTAGAATATTTTCAATTCATACTTGCGAACTTCGACAAACTGAAATGGATTTTATGAAAATCGGCAAGTGATTTTAAAAACTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTCCCAGATGTAGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTAGTACGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACCATGAACCACTTTAGACGTCCGCATGATTGGTTTTGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAAGTTCCTACATAGACCGGAGATAGTGGAGACGCAGACGGAACACAATGAAAAAACAGACAAGTAGATCGTTTTTATACACACACCGAAAGTGAAGGAGGAAAACTAAAGGTTGACTATAGTCACGTAGGTCAGCTATAGACGACCTTCTGGGAAGA</canonical>
            <polymorphic>ATCGAAAACAAACGAAAAATTAGCAAAAAATGGTCCGGTCCATTTTTTGGTCCGTTTTTGGATCATTTTTGATGCGCTTTCGGCCCGTTTTTGACCTGTATTACTTCTATTTTTATCAATTCACAGATTTTCAAATCAAGTAGTTTTTAACTGCTTATTAACTTTTATAACATCATTCCAGTTTGCCGAAACATTAGAGAAAACTGCAAGTATGAATTTAACATATATTATAGAGCAATTTGTACCTATTTTTGCTGTTTCATGAGCTGATTTTTGATTTCTGTACCAAACAAAAATTTTTTATCAGTAGAATATTTTCAATTCATACTTGCGAACTTCGACAAACTGAAATGGATTTTATGAAAATCGGCAAGTGATTTTAAAAACTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGATKTTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTTTTTGAAAATGTAAAAAATATACTTTTTCCCAGATGTAGACCCTTTTTTTACAATATGTTTGGGAAGTTATTAGTACGTTTGGACCGTTTACAGCCTGTCATTGGTCAGTTTTAGTACGTTTTAGGCTTTTTCTCAAAAAGTCTTACAGAATTTTTCAAATAAAAATATTGAAAAACTCACCATGAACCACTTTAGACGTCCGCATGATTGGTTTTGAATATAGAAGCAAATTTACTAAAAAACAGCGAAAAATCAAGTTCCTACATAGACCGGAGATAGTGGAGACGCAGACGGAACACAATGAAAAAACAGACAAGTAGATCGTTTTTATACACACACCGAAAGTGAAGGAGGAAAACTAAAGGTTGACTATAGTCACGTAGGTCAGCTATAGACGACCTTCTGGGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAACTGAAATGGATTTTATGA</pcr_primer_p1>
		<pcr_primer_p2>AACACCAGTTGTTTCAATAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAAACTGAAATGGATTTTATGAAAATCGGCAAGTGATTTTAAAAACTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGATATTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTT</canonical_amplicon>
		<polymorphic_amplicon>ACAAACTGAAATGGATTTTATGAAAATCGGCAAGTGATTTTAAAAACTACTTAAAACTGTAACTTGGTAAGAACGGATGAAAAACGGGCCAAAAACAGAGCAAGATCGGACCAAAACGGAACAAAAAATGAGCCTAAGCCGGTGGAGGTATTTTTAGATKTTTTTAAAAAATTTCGGAGTTTTTCAGTTTCAATGAGTTTTTTTTAAGAAGATTTGAAAATTAGTTAAACTATTGAAACAACTGGTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29017</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>134340</contig_pos>
        <strand>+</strand>
        <context>GAAGTAGTAC[G/T]GACCAAACGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTGGACGCATCTGTTGTAGAACTACACTAGCTGTGGTTCGAAGTAGTAC</left_flank>
        <right_flank>GACCAAACGCGCATTACTATTTAACCAACCGTTTAATAGTTTAGGTTAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACTCCAGCCGAATTGTTTAATTGAAATTCGTGTAACTGGGAAGTCATGGTTTTTGTGGTGTCCAGAGAAAAGACAGATGAAGGAGCCCATAAGGCAATTAGGAGGAGGTAGAGGACCATTTCTGGAATGCATTGATTATTGGGGTTGAAGGATTTTTTTTAATTTGGTGATTTGAGAAGGAGTATAAGTTACTTCAAGCTTAAAGTCTTGTTAAGGGAGGGATTCAAGTTTTGCGGGTGTATTGCTTGACGTTGGACAGTAATCGGTGCTTACAATACGTAATCGGCGGTGTCTCCATTTTCCTCCGCTATAATTCTAATAGTAAGATTCAATAAACATCAAAGAATATACCTTTTTTCAAACCATATTGAAACTGAAAAAAAATCTAAATAAATATTTTTTTTCAGTTTCAAGAACGTTTTAACAATTTCGAATGTATGAGCAGAGATTGGACGCATCTGTTGTAGAACTACACTAGCTGTGGTTCGAAGTAGTACGGACCAAACGCGCATTACTATTTAACCAACCGTTTAATAGTTTAGGTTAATGGGATGCTGCATAGTTAGAAAAACTTAAACTTAGATCAACTTTCAAATCAAACAACTGAAGTTATTCAAAAGAAGAGCTACGCTGTCGCCTTTGCCAGCTTTATTAATTTATTAATGAAAAAAAATGCACAGTAAGACATTTGTGGAACCTCGAAACTACTAAGCAACACTATTTGAAAAACCTCAATTGTCAAACATTAACAGTAAAACAGGAAAAAAATATTCAGAAAATTTATCACCGTTTCAAATACTGTATATGCAAATTTGAAAATCGACTAGTTTTAGTCGTAACTAGATTAACGTTCTAAAACAATTTGAAATGCCTACTTCTTCTGGCTACCTATAACTTATATCTTGCCGCCTGGGGTGTGGTTCCTACTACCCCCGGGGGTCACTAAACGAAAACTAGTTTGCAATATATACATTTTTTGTTTTGACATGATACTGTTA</canonical>
            <polymorphic>TCACTCCAGCCGAATTGTTTAATTGAAATTCGTGTAACTGGGAAGTCATGGTTTTTGTGGTGTCCAGAGAAAAGACAGATGAAGGAGCCCATAAGGCAATTAGGAGGAGGTAGAGGACCATTTCTGGAATGCATTGATTATTGGGGTTGAAGGATTTTTTTTAATTTGGTGATTTGAGAAGGAGTATAAGTTACTTCAAGCTTAAAGTCTTGTTAAGGGAGGGATTCAAGTTTTGCGGGTGTATTGCTTGACGTTGGACAGTAATCGGTGCTTACAATACGTAATCGGCGGTGTCTCCATTTTCCTCCGCTATAATTCTAATAGTAAGATTCAATAAACATCAAAGAATATACCTTTTTTCAAACCATATTGAAACTGAAAAAAAATCTAAATAAATATTTTTTTTCAGTTTCAAGAACGTTTTAACAATTTCGAATGTATGAGCAGAGATTGGACGCATCTGTTGTAGAACTACACTAGCTGTGGTTCGAAGTAGTACKGACCAAACGCGCATTACTATTTAACCAACCGTTTAATAGTTTAGGTTAATGGGATGCTGCATAGTTAGAAAAACTTAAACTTAGATCAACTTTCAAATCAAACAACTGAAGTTATTCAAAAGAAGAGCTACGCTGTCGCCTTTGCCAGCTTTATTAATTTATTAATGAAAAAAAATGCACAGTAAGACATTTGTGGAACCTCGAAACTACTAAGCAACACTATTTGAAAAACCTCAATTGTCAAACATTAACAGTAAAACAGGAAAAAAATATTCAGAAAATTTATCACCGTTTCAAATACTGTATATGCAAATTTGAAAATCGACTAGTTTTAGTCGTAACTAGATTAACGTTCTAAAACAATTTGAAATGCCTACTTCTTCTGGCTACCTATAACTTATATCTTGCCGCCTGGGGTGTGGTTCCTACTACCCCCGGGGGTCACTAAACGAAAACTAGTTTGCAATATATACATTTTTTGTTTTGACATGATACTGTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>500 385 115</canonical_bands>
                <polymorphic_bands>885 115</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 385 115</canonical_bands>
                <polymorphic_bands>885 115</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCAAACCATATTGAAACTG</pcr_primer_p1>
		<pcr_primer_p2>TTGTTTGATTTGAAAGTTGATCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCAAACCATATTGAAACTGAAAAAAAATCTAAATAAATATTTTTTTTCAGTTTCAAGAACGTTTTAACAATTTCGAATGTATGAGCAGAGATTGGACGCATCTGTTGTAGAACTACACTAGCTGTGGTTCGAAGTAGTACGGACCAAACGCGCATTACTATTTAACCAACCGTTTAATAGTTTAGGTTAATGGGATGCTGCATAGTTAGAAAAACTTAAACTTAGATCAACTTTCAAATCAAACAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCAAACCATATTGAAACTGAAAAAAAATCTAAATAAATATTTTTTTTCAGTTTCAAGAACGTTTTAACAATTTCGAATGTATGAGCAGAGATTGGACGCATCTGTTGTAGAACTACACTAGCTGTGGTTCGAAGTAGTACKGACCAAACGCGCATTACTATTTAACCAACCGTTTAATAGTTTAGGTTAATGGGATGCTGCATAGTTAGAAAAACTTAAACTTAGATCAACTTTCAAATCAAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29018</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>152934</contig_pos>
        <strand>+</strand>
        <context>TAGTTTTTTG[A/G]TTTTTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAGAAGCCTCTCTTTATGTACAAATAGATCGACACCTTTAGTTTTTTG</left_flank>
        <right_flank>TTTTTTTTTGCGAATAGCTCCTTGAATTTTCTAGTTCTCCATTGGCATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGTTGAATTACTTTGTTCGGCCTGTAAAATGAGATTTAAGAAAATTAGGTAGCTCTTGAAACTAACAATATCGGCTCCTAGAATTGTGCATTTTCCACCGGTGACCTTTGAAATGTGCTCATCGAACTCAATTTGATTGTTTAGTCCCAGTGACATGATTCTGGAAAAAAATATACTGTTTCGTTTTTTAATTTTATGCAAAACTTTTGCAACATGGATCATTCCCACAGCTTGAAACATTTGCTCAAAAAACTTTTCGTTTGGACTAGTTTTTTGCATAGTTCATGGAAATAATAAATTTTCAAGCAGATGAAAAAATTGCTGTTTCAAGATGTGATTTTCTAGAACATCGATTTTTGGAGAGTGATGGATTTCTCCGATTTTCGCGCCTCCTCCTCCTCCTATTTATACAACACCAAATGAAATATTAGATGATGGGCGGTCGTAAAAAGAAGCCTCTCTTTATGTACAAATAGATCGACACCTTTAGTTTTTTGTTTTTTTTTTGCGAATAGCTCCTTGAATTTTCTAGTTCTCCATTGGCATTATCAAGGTGTCGCTGTTCTTTAATGATAAATTTGAAACAGAAAAAATATTTTTTTAACTTTTTAAAGTGAAAATAATTTTAACTTTAAAGTTGTACGAAAGTAGTTCAGAAATTTTAGATTTGTCTGAAAATTGCAGAGTTTACACAACAAAAATAGAGCTTCAATTTTGTAGTTGACAACTTTTTTACACAAATTCATACGAATGAAATGTTCGCTGTTTCTGTAAGTTATGGTTTGATGCGGTTTATATCATTGAGATGAATTTGTACAAAAAAGTTGTCAACTACAGAATTGAAGCTCTATTGTTTTGAAGAATTTTCAGACTTTTCTGGCCAAATTCACTATATTTTTCTAAGTACACGCTCTCCCCAGCTCCCAATATGAACTGCATGCCTTTTTCTCAGTGGAGCGCGGTTGCTTAGCCGGTTTAACAATTCCTATGAACGAAAA</canonical>
            <polymorphic>TTGGTTGAATTACTTTGTTCGGCCTGTAAAATGAGATTTAAGAAAATTAGGTAGCTCTTGAAACTAACAATATCGGCTCCTAGAATTGTGCATTTTCCACCGGTGACCTTTGAAATGTGCTCATCGAACTCAATTTGATTGTTTAGTCCCAGTGACATGATTCTGGAAAAAAATATACTGTTTCGTTTTTTAATTTTATGCAAAACTTTTGCAACATGGATCATTCCCACAGCTTGAAACATTTGCTCAAAAAACTTTTCGTTTGGACTAGTTTTTTGCATAGTTCATGGAAATAATAAATTTTCAAGCAGATGAAAAAATTGCTGTTTCAAGATGTGATTTTCTAGAACATCGATTTTTGGAGAGTGATGGATTTCTCCGATTTTCGCGCCTCCTCCTCCTCCTATTTATACAACACCAAATGAAATATTAGATGATGGGCGGTCGTAAAAAGAAGCCTCTCTTTATGTACAAATAGATCGACACCTTTAGTTTTTTGRTTTTTTTTTGCGAATAGCTCCTTGAATTTTCTAGTTCTCCATTGGCATTATCAAGGTGTCGCTGTTCTTTAATGATAAATTTGAAACAGAAAAAATATTTTTTTAACTTTTTAAAGTGAAAATAATTTTAACTTTAAAGTTGTACGAAAGTAGTTCAGAAATTTTAGATTTGTCTGAAAATTGCAGAGTTTACACAACAAAAATAGAGCTTCAATTTTGTAGTTGACAACTTTTTTACACAAATTCATACGAATGAAATGTTCGCTGTTTCTGTAAGTTATGGTTTGATGCGGTTTATATCATTGAGATGAATTTGTACAAAAAAGTTGTCAACTACAGAATTGAAGCTCTATTGTTTTGAAGAATTTTCAGACTTTTCTGGCCAAATTCACTATATTTTTCTAAGTACACGCTCTCCCCAGCTCCCAATATGAACTGCATGCCTTTTTCTCAGTGGAGCGCGGTTGCTTAGCCGGTTTAACAATTCCTATGAACGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGAACATCGATTTTTGGAGA</pcr_primer_p1>
		<pcr_primer_p2>TCAAATTTATCATTAAAGAACAGC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CTAGAACATCGATTTTTGGAGAGTGATGGATTTCTCCGATTTTCGCGCCTCCTCCTCCTCCTATTTATACAACACCAAATGAAATATTAGATGATGGGCGGTCGTAAAAAGAAGCCTCTCTTTATGTACAAATAGATCGACACCTTTAGTTTTTTGTTTTTTTTTTGCGAATAGCTCCTTGAATTTTCTAGTTCTCCATTGGCATTATCAAGGTGTCGCTGTTCTTTAATGATAAATTTGA</canonical_amplicon>
		<polymorphic_amplicon>CTAGAACATCGATTTTTGGAGAGTGATGGATTTCTCCGATTTTCGCGCCTCCTCCTCCTCCTATTTATACAACACCAAATGAAATATTAGATGATGGGCGGTCGTAAAAAGAAGCCTCTCTTTATGTACAAATAGATCGACACCTTTAGTTTTTTGRTTTTTTTTTGCGAATAGCTCCTTGAATTTTCTAGTTCTCCATTGGCATTATCAAGGTGTCGCTGTTCTTTAATGATAAATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29019</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>152948</contig_pos>
        <strand></strand>
        <context>TTTTTTGCGA[A/G]TAGCTCCTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTATGTACAAATAGATCGACACCTTTAGTTTTTTGTTTTTTTTTTGCGA</left_flank>
        <right_flank>TAGCTCCTTGAATTTTCTAGTTCTCCATTGGCATTATCAAGGTGTCGCTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTCGGCCTGTAAAATGAGATTTAAGAAAATTAGGTAGCTCTTGAAACTAACAATATCGGCTCCTAGAATTGTGCATTTTCCACCGGTGACCTTTGAAATGTGCTCATCGAACTCAATTTGATTGTTTAGTCCCAGTGACATGATTCTGGAAAAAAATATACTGTTTCGTTTTTTAATTTTATGCAAAACTTTTGCAACATGGATCATTCCCACAGCTTGAAACATTTGCTCAAAAAACTTTTCGTTTGGACTAGTTTTTTGCATAGTTCATGGAAATAATAAATTTTCAAGCAGATGAAAAAATTGCTGTTTCAAGATGTGATTTTCTAGAACATCGATTTTTGGAGAGTGATGGATTTCTCCGATTTTCGCGCCTCCTCCTCCTCCTATTTATACAACACCAAATGAAATATTAGATGATGGGCGGTCGTAAAAAGAAGCCTCTCTTTATGTACAAATAGATCGACACCTTTAGTTTTTTGTTTTTTTTTTGCGAATAGCTCCTTGAATTTTCTAGTTCTCCATTGGCATTATCAAGGTGTCGCTGTTCTTTAATGATAAATTTGAAACAGAAAAAATATTTTTTTAACTTTTTAAAGTGAAAATAATTTTAACTTTAAAGTTGTACGAAAGTAGTTCAGAAATTTTAGATTTGTCTGAAAATTGCAGAGTTTACACAACAAAAATAGAGCTTCAATTTTGTAGTTGACAACTTTTTTACACAAATTCATACGAATGAAATGTTCGCTGTTTCTGTAAGTTATGGTTTGATGCGGTTTATATCATTGAGATGAATTTGTACAAAAAAGTTGTCAACTACAGAATTGAAGCTCTATTGTTTTGAAGAATTTTCAGACTTTTCTGGCCAAATTCACTATATTTTTCTAAGTACACGCTCTCCCCAGCTCCCAATATGAACTGCATGCCTTTTTCTCAGTGGAGCGCGGTTGCTTAGCCGGTTTAACAATTCCTATGAACGAAAAATTGAAAAAAATTG</canonical>
            <polymorphic>TTGTTCGGCCTGTAAAATGAGATTTAAGAAAATTAGGTAGCTCTTGAAACTAACAATATCGGCTCCTAGAATTGTGCATTTTCCACCGGTGACCTTTGAAATGTGCTCATCGAACTCAATTTGATTGTTTAGTCCCAGTGACATGATTCTGGAAAAAAATATACTGTTTCGTTTTTTAATTTTATGCAAAACTTTTGCAACATGGATCATTCCCACAGCTTGAAACATTTGCTCAAAAAACTTTTCGTTTGGACTAGTTTTTTGCATAGTTCATGGAAATAATAAATTTTCAAGCAGATGAAAAAATTGCTGTTTCAAGATGTGATTTTCTAGAACATCGATTTTTGGAGAGTGATGGATTTCTCCGATTTTCGCGCCTCCTCCTCCTCCTATTTATACAACACCAAATGAAATATTAGATGATGGGCGGTCGTAAAAAGAAGCCTCTCTTTATGTACAAATAGATCGACACCTTTAGTTTTTTGTTTTTTTTTTGCGARTAGCTCCTTGAATTTTCTAGTTCTCCATTGGCATTATCAAGGTGTCGCTGTTCTTTAATGATAAATTTGAAACAGAAAAAATATTTTTTTAACTTTTTAAAGTGAAAATAATTTTAACTTTAAAGTTGTACGAAAGTAGTTCAGAAATTTTAGATTTGTCTGAAAATTGCAGAGTTTACACAACAAAAATAGAGCTTCAATTTTGTAGTTGACAACTTTTTTACACAAATTCATACGAATGAAATGTTCGCTGTTTCTGTAAGTTATGGTTTGATGCGGTTTATATCATTGAGATGAATTTGTACAAAAAAGTTGTCAACTACAGAATTGAAGCTCTATTGTTTTGAAGAATTTTCAGACTTTTCTGGCCAAATTCACTATATTTTTCTAAGTACACGCTCTCCCCAGCTCCCAATATGAACTGCATGCCTTTTTCTCAGTGGAGCGCGGTTGCTTAGCCGGTTTAACAATTCCTATGAACGAAAAATTGAAAAAAATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGAACATCGATTTTTGGAGA</pcr_primer_p1>
		<pcr_primer_p2>TCAAATTTATCATTAAAGAACAGC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CTAGAACATCGATTTTTGGAGAGTGATGGATTTCTCCGATTTTCGCGCCTCCTCCTCCTCCTATTTATACAACACCAAATGAAATATTAGATGATGGGCGGTCGTAAAAAGAAGCCTCTCTTTATGTACAAATAGATCGACACCTTTAGTTTTTTGTTTTTTTTTTGCGAATAGCTCCTTGAATTTTCTAGTTCTCCATTGGCATTATCAAGGTGTCGCTGTTCTTTAATGATAAATTTGA</canonical_amplicon>
		<polymorphic_amplicon>CTAGAACATCGATTTTTGGAGAGTGATGGATTTCTCCGATTTTCGCGCCTCCTCCTCCTCCTATTTATACAACACCAAATGAAATATTAGATGATGGGCGGTCGTAAAAAGAAGCCTCTCTTTATGTACAAATAGATCGACACCTTTAGTTTTTTGTTTTTTTTTTGCGARTAGCTCCTTGAATTTTCTAGTTCTCCATTGGCATTATCAAGGTGTCGCTGTTCTTTAATGATAAATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29020</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>153059</contig_pos>
        <strand></strand>
        <context>agtgaaaata[A/G]ttttaaCTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAAATTTGAAACAGAAAAAATATTTTTTTAACTTTTTAAAGTGAAAATA</left_flank>
        <right_flank>TTTTAACTTTAAAGTTGTACGAAAGTAGTTCAGAAATTTTAGATTTGTCT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACTCAATTTGATTGTTTAGTCCCAGTGACATGATTCTGGAAAAAAATATACTGTTTCGTTTTTTAATTTTATGCAAAACTTTTGCAACATGGATCATTCCCACAGCTTGAAACATTTGCTCAAAAAACTTTTCGTTTGGACTAGTTTTTTGCATAGTTCATGGAAATAATAAATTTTCAAGCAGATGAAAAAATTGCTGTTTCAAGATGTGATTTTCTAGAACATCGATTTTTGGAGAGTGATGGATTTCTCCGATTTTCGCGCCTCCTCCTCCTCCTATTTATACAACACCAAATGAAATATTAGATGATGGGCGGTCGTAAAAAGAAGCCTCTCTTTATGTACAAATAGATCGACACCTTTAGTTTTTTGTTTTTTTTTTGCGAATAGCTCCTTGAATTTTCTAGTTCTCCATTGGCATTATCAAGGTGTCGCTGTTCTTTAATGATAAATTTGAAACAGAAAAAATATTTTTTTAACTTTTTAAAGTGAAAATAATTTTAACTTTAAAGTTGTACGAAAGTAGTTCAGAAATTTTAGATTTGTCTGAAAATTGCAGAGTTTACACAACAAAAATAGAGCTTCAATTTTGTAGTTGACAACTTTTTTACACAAATTCATACGAATGAAATGTTCGCTGTTTCTGTAAGTTATGGTTTGATGCGGTTTATATCATTGAGATGAATTTGTACAAAAAAGTTGTCAACTACAGAATTGAAGCTCTATTGTTTTGAAGAATTTTCAGACTTTTCTGGCCAAATTCACTATATTTTTCTAAGTACACGCTCTCCCCAGCTCCCAATATGAACTGCATGCCTTTTTCTCAGTGGAGCGCGGTTGCTTAGCCGGTTTAACAATTCCTATGAACGAAAAATTGAAAAAAATTGGCGAAAAATAAGAGAATTTTGCTAAAACCGCTGAGAAAAAGGCTTGCAGCTCATATTTTTCACTGGGGAGAGCGTGAAGTATGATATTTTCACCTGAAAATACACCGTTAA</canonical>
            <polymorphic>GAACTCAATTTGATTGTTTAGTCCCAGTGACATGATTCTGGAAAAAAATATACTGTTTCGTTTTTTAATTTTATGCAAAACTTTTGCAACATGGATCATTCCCACAGCTTGAAACATTTGCTCAAAAAACTTTTCGTTTGGACTAGTTTTTTGCATAGTTCATGGAAATAATAAATTTTCAAGCAGATGAAAAAATTGCTGTTTCAAGATGTGATTTTCTAGAACATCGATTTTTGGAGAGTGATGGATTTCTCCGATTTTCGCGCCTCCTCCTCCTCCTATTTATACAACACCAAATGAAATATTAGATGATGGGCGGTCGTAAAAAGAAGCCTCTCTTTATGTACAAATAGATCGACACCTTTAGTTTTTTGTTTTTTTTTTGCGAATAGCTCCTTGAATTTTCTAGTTCTCCATTGGCATTATCAAGGTGTCGCTGTTCTTTAATGATAAATTTGAAACAGAAAAAATATTTTTTTAACTTTTTAAAGTGAAAATARTTTTAACTTTAAAGTTGTACGAAAGTAGTTCAGAAATTTTAGATTTGTCTGAAAATTGCAGAGTTTACACAACAAAAATAGAGCTTCAATTTTGTAGTTGACAACTTTTTTACACAAATTCATACGAATGAAATGTTCGCTGTTTCTGTAAGTTATGGTTTGATGCGGTTTATATCATTGAGATGAATTTGTACAAAAAAGTTGTCAACTACAGAATTGAAGCTCTATTGTTTTGAAGAATTTTCAGACTTTTCTGGCCAAATTCACTATATTTTTCTAAGTACACGCTCTCCCCAGCTCCCAATATGAACTGCATGCCTTTTTCTCAGTGGAGCGCGGTTGCTTAGCCGGTTTAACAATTCCTATGAACGAAAAATTGAAAAAAATTGGCGAAAAATAAGAGAATTTTGCTAAAACCGCTGAGAAAAAGGCTTGCAGCTCATATTTTTCACTGGGGAGAGCGTGAAGTATGATATTTTCACCTGAAAATACACCGTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>206 107 97 97 69 60 53 46 36 34 29 29 24 22 20 19 19 17 10 6</canonical_bands>
                <polymorphic_bands>206 107 97 97 82 69 60 53 34 29 29 24 22 20 19 19 17 10 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCTTTAATGATAAATTTGAAACAG</pcr_primer_p1>
		<pcr_primer_p2>TTAACGGTGTATTTTCAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>562</pcr_amplicon_size>
		<canonical_amplicon>GTTCTTTAATGATAAATTTGAAACAGAAAAAATATTTTTTTAACTTTTTAAAGTGAAAATAATTTTAACTTTAAAGTTGTACGAAAGTAGTTCAGAAATTTTAGATTTGTCTGAAAATTGCAGAGTTTACACAACAAAAATAGAGCTTCAATTTTGTAGTTGACAACTTTTTTACACAAATTCATACGAATGAAATGTTCGCTGTTTCTGTAAGTTATGGTTTGATGCGGTTTATATCATTGAGATGAATTTGTACAAAAAAGTTGTCAACTACAGAATTGAAGCTCTATTGTTTTGAAGAATTTTCAGACTTTTCTGGCCAAATTCACTATATTTTTCTAAGTACACGCTCTCCCCAGCTCCCAATATGAACTGCATGCCTTTTTCTCAGTGGAGCGCGGTTGCTTAGCCGGTTTAACAATTCCTATGAACGAAAAATTGAAAAAAATTGGCGAAAAATAAGAGAATTTTGCTAAAACCGCTGAGAAAAAGGCTTGCAGCTCATATTTTTCACTGGGGAGAGCGTGAAGTATGATATTTTCACCTGAAAATACACCGTTAA</canonical_amplicon>
		<polymorphic_amplicon>GTTCTTTAATGATAAATTTGAAACAGAAAAAATATTTTTTTAACTTTTTAAAGTGAAAATARTTTTAACTTTAAAGTTGTACGAAAGTAGTTCAGAAATTTTAGATTTGTCTGAAAATTGCAGAGTTTACACAACAAAAATAGAGCTTCAATTTTGTAGTTGACAACTTTTTTACACAAATTCATACGAATGAAATGTTCGCTGTTTCTGTAAGTTATGGTTTGATGCGGTTTATATCATTGAGATGAATTTGTACAAAAAAGTTGTCAACTACAGAATTGAAGCTCTATTGTTTTGAAGAATTTTCAGACTTTTCTGGCCAAATTCACTATATTTTTCTAAGTACACGCTCTCCCCAGCTCCCAATATGAACTGCATGCCTTTTTCTCAGTGGAGCGCGGTTGCTTAGCCGGTTTAACAATTCCTATGAACGAAAAATTGAAAAAAATTGGCGAAAAATAAGAGAATTTTGCTAAAACCGCTGAGAAAAAGGCTTGCAGCTCATATTTTTCACTGGGGAGAGCGTGAAGTATGATATTTTCACCTGAAAATACACCGTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29021</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>153201</contig_pos>
        <strand>+</strand>
        <context>aatgtTCGCT[A/G]TTTCTGTAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGTAGTTGACAACTTTTTTACACAAATTCATACGAATGAAATGTTCGCT</left_flank>
        <right_flank>TTTCTGTAAGTTATGGTTTGATGCGGTTTATATCATTGAGATGAATTTGT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGTTTTTTGCATAGTTCATGGAAATAATAAATTTTCAAGCAGATGAAAAAATTGCTGTTTCAAGATGTGATTTTCTAGAACATCGATTTTTGGAGAGTGATGGATTTCTCCGATTTTCGCGCCTCCTCCTCCTCCTATTTATACAACACCAAATGAAATATTAGATGATGGGCGGTCGTAAAAAGAAGCCTCTCTTTATGTACAAATAGATCGACACCTTTAGTTTTTTGTTTTTTTTTTGCGAATAGCTCCTTGAATTTTCTAGTTCTCCATTGGCATTATCAAGGTGTCGCTGTTCTTTAATGATAAATTTGAAACAGAAAAAATATTTTTTTAACTTTTTAAAGTGAAAATAATTTTAACTTTAAAGTTGTACGAAAGTAGTTCAGAAATTTTAGATTTGTCTGAAAATTGCAGAGTTTACACAACAAAAATAGAGCTTCAATTTTGTAGTTGACAACTTTTTTACACAAATTCATACGAATGAAATGTTCGCTGTTTCTGTAAGTTATGGTTTGATGCGGTTTATATCATTGAGATGAATTTGTACAAAAAAGTTGTCAACTACAGAATTGAAGCTCTATTGTTTTGAAGAATTTTCAGACTTTTCTGGCCAAATTCACTATATTTTTCTAAGTACACGCTCTCCCCAGCTCCCAATATGAACTGCATGCCTTTTTCTCAGTGGAGCGCGGTTGCTTAGCCGGTTTAACAATTCCTATGAACGAAAAATTGAAAAAAATTGGCGAAAAATAAGAGAATTTTGCTAAAACCGCTGAGAAAAAGGCTTGCAGCTCATATTTTTCACTGGGGAGAGCGTGAAGTATGATATTTTCACCTGAAAATACACCGTTAAAGACAAAGCTACGAGGTTATACTTTAAGAAAGTGATTTCTGGATTACTGTACCTCTTCCTAACTTACGTGCAATCGTCTTGATTCACTGCCTCTGGCTTACAAACATATTTCCCGCCATCGGACTTCTCTCCTATTCTCACT</canonical>
            <polymorphic>CTAGTTTTTTGCATAGTTCATGGAAATAATAAATTTTCAAGCAGATGAAAAAATTGCTGTTTCAAGATGTGATTTTCTAGAACATCGATTTTTGGAGAGTGATGGATTTCTCCGATTTTCGCGCCTCCTCCTCCTCCTATTTATACAACACCAAATGAAATATTAGATGATGGGCGGTCGTAAAAAGAAGCCTCTCTTTATGTACAAATAGATCGACACCTTTAGTTTTTTGTTTTTTTTTTGCGAATAGCTCCTTGAATTTTCTAGTTCTCCATTGGCATTATCAAGGTGTCGCTGTTCTTTAATGATAAATTTGAAACAGAAAAAATATTTTTTTAACTTTTTAAAGTGAAAATAATTTTAACTTTAAAGTTGTACGAAAGTAGTTCAGAAATTTTAGATTTGTCTGAAAATTGCAGAGTTTACACAACAAAAATAGAGCTTCAATTTTGTAGTTGACAACTTTTTTACACAAATTCATACGAATGAAATGTTCGCTRTTTCTGTAAGTTATGGTTTGATGCGGTTTATATCATTGAGATGAATTTGTACAAAAAAGTTGTCAACTACAGAATTGAAGCTCTATTGTTTTGAAGAATTTTCAGACTTTTCTGGCCAAATTCACTATATTTTTCTAAGTACACGCTCTCCCCAGCTCCCAATATGAACTGCATGCCTTTTTCTCAGTGGAGCGCGGTTGCTTAGCCGGTTTAACAATTCCTATGAACGAAAAATTGAAAAAAATTGGCGAAAAATAAGAGAATTTTGCTAAAACCGCTGAGAAAAAGGCTTGCAGCTCATATTTTTCACTGGGGAGAGCGTGAAGTATGATATTTTCACCTGAAAATACACCGTTAAAGACAAAGCTACGAGGTTATACTTTAAGAAAGTGATTTCTGGATTACTGTACCTCTTCCTAACTTACGTGCAATCGTCTTGATTCACTGCCTCTGGCTTACAAACATATTTCCCGCCATCGGACTTCTCTCCTATTCTCACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCTTTAATGATAAATTTGAAACAG</pcr_primer_p1>
		<pcr_primer_p2>TTAACGGTGTATTTTCAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>562</pcr_amplicon_size>
		<canonical_amplicon>GTTCTTTAATGATAAATTTGAAACAGAAAAAATATTTTTTTAACTTTTTAAAGTGAAAATAATTTTAACTTTAAAGTTGTACGAAAGTAGTTCAGAAATTTTAGATTTGTCTGAAAATTGCAGAGTTTACACAACAAAAATAGAGCTTCAATTTTGTAGTTGACAACTTTTTTACACAAATTCATACGAATGAAATGTTCGCTGTTTCTGTAAGTTATGGTTTGATGCGGTTTATATCATTGAGATGAATTTGTACAAAAAAGTTGTCAACTACAGAATTGAAGCTCTATTGTTTTGAAGAATTTTCAGACTTTTCTGGCCAAATTCACTATATTTTTCTAAGTACACGCTCTCCCCAGCTCCCAATATGAACTGCATGCCTTTTTCTCAGTGGAGCGCGGTTGCTTAGCCGGTTTAACAATTCCTATGAACGAAAAATTGAAAAAAATTGGCGAAAAATAAGAGAATTTTGCTAAAACCGCTGAGAAAAAGGCTTGCAGCTCATATTTTTCACTGGGGAGAGCGTGAAGTATGATATTTTCACCTGAAAATACACCGTTAA</canonical_amplicon>
		<polymorphic_amplicon>GTTCTTTAATGATAAATTTGAAACAGAAAAAATATTTTTTTAACTTTTTAAAGTGAAAATAATTTTAACTTTAAAGTTGTACGAAAGTAGTTCAGAAATTTTAGATTTGTCTGAAAATTGCAGAGTTTACACAACAAAAATAGAGCTTCAATTTTGTAGTTGACAACTTTTTTACACAAATTCATACGAATGAAATGTTCGCTRTTTCTGTAAGTTATGGTTTGATGCGGTTTATATCATTGAGATGAATTTGTACAAAAAAGTTGTCAACTACAGAATTGAAGCTCTATTGTTTTGAAGAATTTTCAGACTTTTCTGGCCAAATTCACTATATTTTTCTAAGTACACGCTCTCCCCAGCTCCCAATATGAACTGCATGCCTTTTTCTCAGTGGAGCGCGGTTGCTTAGCCGGTTTAACAATTCCTATGAACGAAAAATTGAAAAAAATTGGCGAAAAATAAGAGAATTTTGCTAAAACCGCTGAGAAAAAGGCTTGCAGCTCATATTTTTCACTGGGGAGAGCGTGAAGTATGATATTTTCACCTGAAAATACACCGTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29022</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>153244</contig_pos>
        <strand></strand>
        <context>tcattgagat[G/T]aatttgtaca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTCGCTGTTTCTGTAAGTTATGGTTTGATGCGGTTTATATCATTGAGAT</left_flank>
        <right_flank>AATTTGTACAAAAAAGTTGTCAACTACAGAATTGAAGCTCTATTGTTTTG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGAAAAAATTGCTGTTTCAAGATGTGATTTTCTAGAACATCGATTTTTGGAGAGTGATGGATTTCTCCGATTTTCGCGCCTCCTCCTCCTCCTATTTATACAACACCAAATGAAATATTAGATGATGGGCGGTCGTAAAAAGAAGCCTCTCTTTATGTACAAATAGATCGACACCTTTAGTTTTTTGTTTTTTTTTTGCGAATAGCTCCTTGAATTTTCTAGTTCTCCATTGGCATTATCAAGGTGTCGCTGTTCTTTAATGATAAATTTGAAACAGAAAAAATATTTTTTTAACTTTTTAAAGTGAAAATAATTTTAACTTTAAAGTTGTACGAAAGTAGTTCAGAAATTTTAGATTTGTCTGAAAATTGCAGAGTTTACACAACAAAAATAGAGCTTCAATTTTGTAGTTGACAACTTTTTTACACAAATTCATACGAATGAAATGTTCGCTGTTTCTGTAAGTTATGGTTTGATGCGGTTTATATCATTGAGATGAATTTGTACAAAAAAGTTGTCAACTACAGAATTGAAGCTCTATTGTTTTGAAGAATTTTCAGACTTTTCTGGCCAAATTCACTATATTTTTCTAAGTACACGCTCTCCCCAGCTCCCAATATGAACTGCATGCCTTTTTCTCAGTGGAGCGCGGTTGCTTAGCCGGTTTAACAATTCCTATGAACGAAAAATTGAAAAAAATTGGCGAAAAATAAGAGAATTTTGCTAAAACCGCTGAGAAAAAGGCTTGCAGCTCATATTTTTCACTGGGGAGAGCGTGAAGTATGATATTTTCACCTGAAAATACACCGTTAAAGACAAAGCTACGAGGTTATACTTTAAGAAAGTGATTTCTGGATTACTGTACCTCTTCCTAACTTACGTGCAATCGTCTTGATTCACTGCCTCTGGCTTACAAACATATTTCCCGCCATCGGACTTCTCTCCTATTCTCACTTTATCCTTACAAATGACTTCTGGCATGACTCGTTGATAGAATT</canonical>
            <polymorphic>GATGAAAAAATTGCTGTTTCAAGATGTGATTTTCTAGAACATCGATTTTTGGAGAGTGATGGATTTCTCCGATTTTCGCGCCTCCTCCTCCTCCTATTTATACAACACCAAATGAAATATTAGATGATGGGCGGTCGTAAAAAGAAGCCTCTCTTTATGTACAAATAGATCGACACCTTTAGTTTTTTGTTTTTTTTTTGCGAATAGCTCCTTGAATTTTCTAGTTCTCCATTGGCATTATCAAGGTGTCGCTGTTCTTTAATGATAAATTTGAAACAGAAAAAATATTTTTTTAACTTTTTAAAGTGAAAATAATTTTAACTTTAAAGTTGTACGAAAGTAGTTCAGAAATTTTAGATTTGTCTGAAAATTGCAGAGTTTACACAACAAAAATAGAGCTTCAATTTTGTAGTTGACAACTTTTTTACACAAATTCATACGAATGAAATGTTCGCTGTTTCTGTAAGTTATGGTTTGATGCGGTTTATATCATTGAGATKAATTTGTACAAAAAAGTTGTCAACTACAGAATTGAAGCTCTATTGTTTTGAAGAATTTTCAGACTTTTCTGGCCAAATTCACTATATTTTTCTAAGTACACGCTCTCCCCAGCTCCCAATATGAACTGCATGCCTTTTTCTCAGTGGAGCGCGGTTGCTTAGCCGGTTTAACAATTCCTATGAACGAAAAATTGAAAAAAATTGGCGAAAAATAAGAGAATTTTGCTAAAACCGCTGAGAAAAAGGCTTGCAGCTCATATTTTTCACTGGGGAGAGCGTGAAGTATGATATTTTCACCTGAAAATACACCGTTAAAGACAAAGCTACGAGGTTATACTTTAAGAAAGTGATTTCTGGATTACTGTACCTCTTCCTAACTTACGTGCAATCGTCTTGATTCACTGCCTCTGGCTTACAAACATATTTCCCGCCATCGGACTTCTCTCCTATTCTCACTTTATCCTTACAAATGACTTCTGGCATGACTCGTTGATAGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>282 214 143 82 82 69 53 53 22</canonical_bands>
                <polymorphic_bands>282 214 143 122 82 82 53 22</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>505 440 55</canonical_bands>
                <polymorphic_bands>560 440</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCTTTAATGATAAATTTGAAACAG</pcr_primer_p1>
		<pcr_primer_p2>TTAACGGTGTATTTTCAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>562</pcr_amplicon_size>
		<canonical_amplicon>GTTCTTTAATGATAAATTTGAAACAGAAAAAATATTTTTTTAACTTTTTAAAGTGAAAATAATTTTAACTTTAAAGTTGTACGAAAGTAGTTCAGAAATTTTAGATTTGTCTGAAAATTGCAGAGTTTACACAACAAAAATAGAGCTTCAATTTTGTAGTTGACAACTTTTTTACACAAATTCATACGAATGAAATGTTCGCTGTTTCTGTAAGTTATGGTTTGATGCGGTTTATATCATTGAGATGAATTTGTACAAAAAAGTTGTCAACTACAGAATTGAAGCTCTATTGTTTTGAAGAATTTTCAGACTTTTCTGGCCAAATTCACTATATTTTTCTAAGTACACGCTCTCCCCAGCTCCCAATATGAACTGCATGCCTTTTTCTCAGTGGAGCGCGGTTGCTTAGCCGGTTTAACAATTCCTATGAACGAAAAATTGAAAAAAATTGGCGAAAAATAAGAGAATTTTGCTAAAACCGCTGAGAAAAAGGCTTGCAGCTCATATTTTTCACTGGGGAGAGCGTGAAGTATGATATTTTCACCTGAAAATACACCGTTAA</canonical_amplicon>
		<polymorphic_amplicon>GTTCTTTAATGATAAATTTGAAACAGAAAAAATATTTTTTTAACTTTTTAAAGTGAAAATAATTTTAACTTTAAAGTTGTACGAAAGTAGTTCAGAAATTTTAGATTTGTCTGAAAATTGCAGAGTTTACACAACAAAAATAGAGCTTCAATTTTGTAGTTGACAACTTTTTTACACAAATTCATACGAATGAAATGTTCGCTGTTTCTGTAAGTTATGGTTTGATGCGGTTTATATCATTGAGATKAATTTGTACAAAAAAGTTGTCAACTACAGAATTGAAGCTCTATTGTTTTGAAGAATTTTCAGACTTTTCTGGCCAAATTCACTATATTTTTCTAAGTACACGCTCTCCCCAGCTCCCAATATGAACTGCATGCCTTTTTCTCAGTGGAGCGCGGTTGCTTAGCCGGTTTAACAATTCCTATGAACGAAAAATTGAAAAAAATTGGCGAAAAATAAGAGAATTTTGCTAAAACCGCTGAGAAAAAGGCTTGCAGCTCATATTTTTCACTGGGGAGAGCGTGAAGTATGATATTTTCACCTGAAAATACACCGTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29023</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>159822</contig_pos>
        <strand>+</strand>
        <context>AATGGATAAA[A/G]AGAAATTTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAATCATTTTTGTTTTTCACCTCTATTTTTCCATTTGAAAATGGATAAA</left_flank>
        <right_flank>AGAAATTTGTACTCATGCATGAGCGCTTTATGATTCTTAAGACTTGGCTT</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGGTTTTTAGTAATGAAGACTAATGAAAGTTTCATGTTTATTGTTGTTCATTGTCTGCTTTTTAAACTCTTTCTCTTTTGTTTTAGAAAATGAGCAAAATTTGAAAAAAAAACTCCAATCAAGAATACATCAAATAATTTCCTTTAAAAACTATTAAATAAAATATATGAAACAGAAGCACATTTGGGCATACCAACCTTAACTGCTCCAGCTGCATTGTTCTCGTGAATCTCGATTTGCTACGCCGTCGATAGCTTCAGAATCTCCTCGACGTGGAGTGAATTTGCAACCTGAGAGAAGGTAAATGATAACTATTCAATTTCATTTTTCTATAAAATTTGGTTCCTTTCCGCCATTAGGCTAAAACTCAGCTCCTGCTTTTCGCAGATAATAATACCTTTCATTATACTCCTTTTTCTCTAAATCTCCTCACTCTTTTTCCTCATGATAATCATTTTTGTTTTTCACCTCTATTTTTCCATTTGAAAATGGATAAAGAGAAATTTGTACTCATGCATGAGCGCTTTATGATTCTTAAGACTTGGCTTGGAAGTTAGTGAATATATTTTCATTAAAATTTAGAAGTCTATTTATGTTTTTATTCCTGTTGTTTTAATTATTAAAAATCCGGCAACTAGTTATTTAAAAATAGCCAAATGAAACTGAAACGCTTGTTTCTGAAAAATGGAAGAATCCACTTTAACCTAGTCTATCTCGATTTCTGTCAAAGATATCAAAAAGTGAAAAACTAACAAAATGTTTTAACAAAATGTTTTTTTTATTATGAAAAATATTATATTTGTTCACCTTTTTTTTATCTTTCACAGGAACCGAGATTGATAGGATCAAAGTTGGCGTAAATTCCTGTGTATCTCAAAAAATACCTCAATTGTTAGGCTTACTCCCTTGGGTTCAAGGCAATGGGTCAGAAATCGCGCCCCAGTAAACGTGAGATTTTAGAAAAAATTCGCTGCTGAATTATGTAACTGAGGATCAAA</canonical>
            <polymorphic>AGAGGTTTTTAGTAATGAAGACTAATGAAAGTTTCATGTTTATTGTTGTTCATTGTCTGCTTTTTAAACTCTTTCTCTTTTGTTTTAGAAAATGAGCAAAATTTGAAAAAAAAACTCCAATCAAGAATACATCAAATAATTTCCTTTAAAAACTATTAAATAAAATATATGAAACAGAAGCACATTTGGGCATACCAACCTTAACTGCTCCAGCTGCATTGTTCTCGTGAATCTCGATTTGCTACGCCGTCGATAGCTTCAGAATCTCCTCGACGTGGAGTGAATTTGCAACCTGAGAGAAGGTAAATGATAACTATTCAATTTCATTTTTCTATAAAATTTGGTTCCTTTCCGCCATTAGGCTAAAACTCAGCTCCTGCTTTTCGCAGATAATAATACCTTTCATTATACTCCTTTTTCTCTAAATCTCCTCACTCTTTTTCCTCATGATAATCATTTTTGTTTTTCACCTCTATTTTTCCATTTGAAAATGGATAAARAGAAATTTGTACTCATGCATGAGCGCTTTATGATTCTTAAGACTTGGCTTGGAAGTTAGTGAATATATTTTCATTAAAATTTAGAAGTCTATTTATGTTTTTATTCCTGTTGTTTTAATTATTAAAAATCCGGCAACTAGTTATTTAAAAATAGCCAAATGAAACTGAAACGCTTGTTTCTGAAAAATGGAAGAATCCACTTTAACCTAGTCTATCTCGATTTCTGTCAAAGATATCAAAAAGTGAAAAACTAACAAAATGTTTTAACAAAATGTTTTTTTTATTATGAAAAATATTATATTTGTTCACCTTTTTTTTATCTTTCACAGGAACCGAGATTGATAGGATCAAAGTTGGCGTAAATTCCTGTGTATCTCAAAAAATACCTCAATTGTTAGGCTTACTCCCTTGGGTTCAAGGCAATGGGTCAGAAATCGCGCCCCAGTAAACGTGAGATTTTAGAAAAAATTCGCTGCTGAATTATGTAACTGAGGATCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCTAAATCTCCTCACTCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCAGTTTCATTTGGCTATTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTCTAAATCTCCTCACTCTTTTTCCTCATGATAATCATTTTTGTTTTTCACCTCTATTTTTCCATTTGAAAATGGATAAAGAGAAATTTGTACTCATGCATGAGCGCTTTATGATTCTTAAGACTTGGCTTGGAAGTTAGTGAATATATTTTCATTAAAATTTAGAAGTCTATTTATGTTTTTATTCCTGTTGTTTTAATTATTAAAAATCCGGCAACTAGTTATTTAAAAATAGCCAAATGAAACTGA</canonical_amplicon>
		<polymorphic_amplicon>TCTCTAAATCTCCTCACTCTTTTTCCTCATGATAATCATTTTTGTTTTTCACCTCTATTTTTCCATTTGAAAATGGATAAARAGAAATTTGTACTCATGCATGAGCGCTTTATGATTCTTAAGACTTGGCTTGGAAGTTAGTGAATATATTTTCATTAAAATTTAGAAGTCTATTTATGTTTTTATTCCTGTTGTTTTAATTATTAAAAATCCGGCAACTAGTTATTTAAAAATAGCCAAATGAAACTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29024</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>159916</contig_pos>
        <strand>+</strand>
        <context>GAAGTCTATT[C/T]ATGTTTTTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGCTTGGAAGTTAGTGAATATATTTTCATTAAAATTTAGAAGTCTATT</left_flank>
        <right_flank>ATGTTTTTATTCCTGTTGTTTTAATTATTAAAAATCCGGCAACTAGTTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCAAAATTTGAAAAAAAAACTCCAATCAAGAATACATCAAATAATTTCCTTTAAAAACTATTAAATAAAATATATGAAACAGAAGCACATTTGGGCATACCAACCTTAACTGCTCCAGCTGCATTGTTCTCGTGAATCTCGATTTGCTACGCCGTCGATAGCTTCAGAATCTCCTCGACGTGGAGTGAATTTGCAACCTGAGAGAAGGTAAATGATAACTATTCAATTTCATTTTTCTATAAAATTTGGTTCCTTTCCGCCATTAGGCTAAAACTCAGCTCCTGCTTTTCGCAGATAATAATACCTTTCATTATACTCCTTTTTCTCTAAATCTCCTCACTCTTTTTCCTCATGATAATCATTTTTGTTTTTCACCTCTATTTTTCCATTTGAAAATGGATAAAGAGAAATTTGTACTCATGCATGAGCGCTTTATGATTCTTAAGACTTGGCTTGGAAGTTAGTGAATATATTTTCATTAAAATTTAGAAGTCTATTTATGTTTTTATTCCTGTTGTTTTAATTATTAAAAATCCGGCAACTAGTTATTTAAAAATAGCCAAATGAAACTGAAACGCTTGTTTCTGAAAAATGGAAGAATCCACTTTAACCTAGTCTATCTCGATTTCTGTCAAAGATATCAAAAAGTGAAAAACTAACAAAATGTTTTAACAAAATGTTTTTTTTATTATGAAAAATATTATATTTGTTCACCTTTTTTTTATCTTTCACAGGAACCGAGATTGATAGGATCAAAGTTGGCGTAAATTCCTGTGTATCTCAAAAAATACCTCAATTGTTAGGCTTACTCCCTTGGGTTCAAGGCAATGGGTCAGAAATCGCGCCCCAGTAAACGTGAGATTTTAGAAAAAATTCGCTGCTGAATTATGTAACTGAGGATCAAACTTTTAAACGTTGGACAAAAAAATCACGCGTTGCAACTCCTTGATAAAAACTAATTAGGTAAAATCCATGTCAACTTGGAAATTATTAAATTTC</canonical>
            <polymorphic>AGCAAAATTTGAAAAAAAAACTCCAATCAAGAATACATCAAATAATTTCCTTTAAAAACTATTAAATAAAATATATGAAACAGAAGCACATTTGGGCATACCAACCTTAACTGCTCCAGCTGCATTGTTCTCGTGAATCTCGATTTGCTACGCCGTCGATAGCTTCAGAATCTCCTCGACGTGGAGTGAATTTGCAACCTGAGAGAAGGTAAATGATAACTATTCAATTTCATTTTTCTATAAAATTTGGTTCCTTTCCGCCATTAGGCTAAAACTCAGCTCCTGCTTTTCGCAGATAATAATACCTTTCATTATACTCCTTTTTCTCTAAATCTCCTCACTCTTTTTCCTCATGATAATCATTTTTGTTTTTCACCTCTATTTTTCCATTTGAAAATGGATAAAGAGAAATTTGTACTCATGCATGAGCGCTTTATGATTCTTAAGACTTGGCTTGGAAGTTAGTGAATATATTTTCATTAAAATTTAGAAGTCTATTYATGTTTTTATTCCTGTTGTTTTAATTATTAAAAATCCGGCAACTAGTTATTTAAAAATAGCCAAATGAAACTGAAACGCTTGTTTCTGAAAAATGGAAGAATCCACTTTAACCTAGTCTATCTCGATTTCTGTCAAAGATATCAAAAAGTGAAAAACTAACAAAATGTTTTAACAAAATGTTTTTTTTATTATGAAAAATATTATATTTGTTCACCTTTTTTTTATCTTTCACAGGAACCGAGATTGATAGGATCAAAGTTGGCGTAAATTCCTGTGTATCTCAAAAAATACCTCAATTGTTAGGCTTACTCCCTTGGGTTCAAGGCAATGGGTCAGAAATCGCGCCCCAGTAAACGTGAGATTTTAGAAAAAATTCGCTGCTGAATTATGTAACTGAGGATCAAACTTTTAAACGTTGGACAAAAAAATCACGCGTTGCAACTCCTTGATAAAAACTAATTAGGTAAAATCCATGTCAACTTGGAAATTATTAAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCTAAATCTCCTCACTCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCAGTTTCATTTGGCTATTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTCTAAATCTCCTCACTCTTTTTCCTCATGATAATCATTTTTGTTTTTCACCTCTATTTTTCCATTTGAAAATGGATAAAGAGAAATTTGTACTCATGCATGAGCGCTTTATGATTCTTAAGACTTGGCTTGGAAGTTAGTGAATATATTTTCATTAAAATTTAGAAGTCTATTTATGTTTTTATTCCTGTTGTTTTAATTATTAAAAATCCGGCAACTAGTTATTTAAAAATAGCCAAATGAAACTGA</canonical_amplicon>
		<polymorphic_amplicon>TCTCTAAATCTCCTCACTCTTTTTCCTCATGATAATCATTTTTGTTTTTCACCTCTATTTTTCCATTTGAAAATGGATAAAGAGAAATTTGTACTCATGCATGAGCGCTTTATGATTCTTAAGACTTGGCTTGGAAGTTAGTGAATATATTTTCATTAAAATTTAGAAGTCTATTYATGTTTTTATTCCTGTTGTTTTAATTATTAAAAATCCGGCAACTAGTTATTTAAAAATAGCCAAATGAAACTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29025</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>159957</contig_pos>
        <strand>+</strand>
        <context>AAAATCCGGC[A/T]ACTAGTTATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGTCTATTTATGTTTTTATTCCTGTTGTTTTAATTATTAAAAATCCGGC</left_flank>
        <right_flank>ACTAGTTATTTAAAAATAGCCAAATGAAACTGAAACGCTTGTTTCTGAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAATTTCCTTTAAAAACTATTAAATAAAATATATGAAACAGAAGCACATTTGGGCATACCAACCTTAACTGCTCCAGCTGCATTGTTCTCGTGAATCTCGATTTGCTACGCCGTCGATAGCTTCAGAATCTCCTCGACGTGGAGTGAATTTGCAACCTGAGAGAAGGTAAATGATAACTATTCAATTTCATTTTTCTATAAAATTTGGTTCCTTTCCGCCATTAGGCTAAAACTCAGCTCCTGCTTTTCGCAGATAATAATACCTTTCATTATACTCCTTTTTCTCTAAATCTCCTCACTCTTTTTCCTCATGATAATCATTTTTGTTTTTCACCTCTATTTTTCCATTTGAAAATGGATAAAGAGAAATTTGTACTCATGCATGAGCGCTTTATGATTCTTAAGACTTGGCTTGGAAGTTAGTGAATATATTTTCATTAAAATTTAGAAGTCTATTTATGTTTTTATTCCTGTTGTTTTAATTATTAAAAATCCGGCAACTAGTTATTTAAAAATAGCCAAATGAAACTGAAACGCTTGTTTCTGAAAAATGGAAGAATCCACTTTAACCTAGTCTATCTCGATTTCTGTCAAAGATATCAAAAAGTGAAAAACTAACAAAATGTTTTAACAAAATGTTTTTTTTATTATGAAAAATATTATATTTGTTCACCTTTTTTTTATCTTTCACAGGAACCGAGATTGATAGGATCAAAGTTGGCGTAAATTCCTGTGTATCTCAAAAAATACCTCAATTGTTAGGCTTACTCCCTTGGGTTCAAGGCAATGGGTCAGAAATCGCGCCCCAGTAAACGTGAGATTTTAGAAAAAATTCGCTGCTGAATTATGTAACTGAGGATCAAACTTTTAAACGTTGGACAAAAAAATCACGCGTTGCAACTCCTTGATAAAAACTAATTAGGTAAAATCCATGTCAACTTGGAAATTATTAAATTTCTTCTGGCCTAAAGGTTATTTGGGGCGCGTTTTTTTGACCCG</canonical>
            <polymorphic>ATAATTTCCTTTAAAAACTATTAAATAAAATATATGAAACAGAAGCACATTTGGGCATACCAACCTTAACTGCTCCAGCTGCATTGTTCTCGTGAATCTCGATTTGCTACGCCGTCGATAGCTTCAGAATCTCCTCGACGTGGAGTGAATTTGCAACCTGAGAGAAGGTAAATGATAACTATTCAATTTCATTTTTCTATAAAATTTGGTTCCTTTCCGCCATTAGGCTAAAACTCAGCTCCTGCTTTTCGCAGATAATAATACCTTTCATTATACTCCTTTTTCTCTAAATCTCCTCACTCTTTTTCCTCATGATAATCATTTTTGTTTTTCACCTCTATTTTTCCATTTGAAAATGGATAAAGAGAAATTTGTACTCATGCATGAGCGCTTTATGATTCTTAAGACTTGGCTTGGAAGTTAGTGAATATATTTTCATTAAAATTTAGAAGTCTATTTATGTTTTTATTCCTGTTGTTTTAATTATTAAAAATCCGGCWACTAGTTATTTAAAAATAGCCAAATGAAACTGAAACGCTTGTTTCTGAAAAATGGAAGAATCCACTTTAACCTAGTCTATCTCGATTTCTGTCAAAGATATCAAAAAGTGAAAAACTAACAAAATGTTTTAACAAAATGTTTTTTTTATTATGAAAAATATTATATTTGTTCACCTTTTTTTTATCTTTCACAGGAACCGAGATTGATAGGATCAAAGTTGGCGTAAATTCCTGTGTATCTCAAAAAATACCTCAATTGTTAGGCTTACTCCCTTGGGTTCAAGGCAATGGGTCAGAAATCGCGCCCCAGTAAACGTGAGATTTTAGAAAAAATTCGCTGCTGAATTATGTAACTGAGGATCAAACTTTTAAACGTTGGACAAAAAAATCACGCGTTGCAACTCCTTGATAAAAACTAATTAGGTAAAATCCATGTCAACTTGGAAATTATTAAATTTCTTCTGGCCTAAAGGTTATTTGGGGCGCGTTTTTTTGACCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGCTTGGAAGTTAGTGAATA</pcr_primer_p1>
		<pcr_primer_p2>TTTGAGATACACAGGAATTTACG</pcr_primer_p2>
		<pcr_amplicon_size>336</pcr_amplicon_size>
		<canonical_amplicon>TGGCTTGGAAGTTAGTGAATATATTTTCATTAAAATTTAGAAGTCTATTTATGTTTTTATTCCTGTTGTTTTAATTATTAAAAATCCGGCAACTAGTTATTTAAAAATAGCCAAATGAAACTGAAACGCTTGTTTCTGAAAAATGGAAGAATCCACTTTAACCTAGTCTATCTCGATTTCTGTCAAAGATATCAAAAAGTGAAAAACTAACAAAATGTTTTAACAAAATGTTTTTTTTATTATGAAAAATATTATATTTGTTCACCTTTTTTTTATCTTTCACAGGAACCGAGATTGATAGGATCAAAGTTGGCGTAAATTCCTGTGTATCTCAAA</canonical_amplicon>
		<polymorphic_amplicon>TGGCTTGGAAGTTAGTGAATATATTTTCATTAAAATTTAGAAGTCTATTTATGTTTTTATTCCTGTTGTTTTAATTATTAAAAATCCGGCWACTAGTTATTTAAAAATAGCCAAATGAAACTGAAACGCTTGTTTCTGAAAAATGGAAGAATCCACTTTAACCTAGTCTATCTCGATTTCTGTCAAAGATATCAAAAAGTGAAAAACTAACAAAATGTTTTAACAAAATGTTTTTTTTATTATGAAAAATATTATATTTGTTCACCTTTTTTTTATCTTTCACAGGAACCGAGATTGATAGGATCAAAGTTGGCGTAAATTCCTGTGTATCTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29026</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>160106</contig_pos>
        <strand></strand>
        <context>gtttttttta[T/A]tatgaaaaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TATCAAAAAGTGAAAAACTAACAAAATGTTTTAACAAAATGTTTTTTTTA</left_flank>
        <right_flank>TATGAAAAATATTATATTTGTTCACCTTTTTTTTATCTTTCACAGGAACC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGCAACCTGAGAGAAGGTAAATGATAACTATTCAATTTCATTTTTCTATAAAATTTGGTTCCTTTCCGCCATTAGGCTAAAACTCAGCTCCTGCTTTTCGCAGATAATAATACCTTTCATTATACTCCTTTTTCTCTAAATCTCCTCACTCTTTTTCCTCATGATAATCATTTTTGTTTTTCACCTCTATTTTTCCATTTGAAAATGGATAAAGAGAAATTTGTACTCATGCATGAGCGCTTTATGATTCTTAAGACTTGGCTTGGAAGTTAGTGAATATATTTTCATTAAAATTTAGAAGTCTATTTATGTTTTTATTCCTGTTGTTTTAATTATTAAAAATCCGGCAACTAGTTATTTAAAAATAGCCAAATGAAACTGAAACGCTTGTTTCTGAAAAATGGAAGAATCCACTTTAACCTAGTCTATCTCGATTTCTGTCAAAGATATCAAAAAGTGAAAAACTAACAAAATGTTTTAACAAAATGTTTTTTTTATTATGAAAAATATTATATTTGTTCACCTTTTTTTTATCTTTCACAGGAACCGAGATTGATAGGATCAAAGTTGGCGTAAATTCCTGTGTATCTCAAAAAATACCTCAATTGTTAGGCTTACTCCCTTGGGTTCAAGGCAATGGGTCAGAAATCGCGCCCCAGTAAACGTGAGATTTTAGAAAAAATTCGCTGCTGAATTATGTAACTGAGGATCAAACTTTTAAACGTTGGACAAAAAAATCACGCGTTGCAACTCCTTGATAAAAACTAATTAGGTAAAATCCATGTCAACTTGGAAATTATTAAATTTCTTCTGGCCTAAAGGTTATTTGGGGCGCGTTTTTTTGACCCGTTGGCTTGAACCCAAGTCTTTACTTACAAGGGAAGGTTTTTCAGTCAACGGTTGAGAATTTGCTCAAAATTTGTACAAAGGCACTTTTTTCGAACATGCTGAATCCGAATCCAAAAAAATTTTTAGCCCGTTCTCAAAAGGAGCCGAAA</canonical>
            <polymorphic>TTTGCAACCTGAGAGAAGGTAAATGATAACTATTCAATTTCATTTTTCTATAAAATTTGGTTCCTTTCCGCCATTAGGCTAAAACTCAGCTCCTGCTTTTCGCAGATAATAATACCTTTCATTATACTCCTTTTTCTCTAAATCTCCTCACTCTTTTTCCTCATGATAATCATTTTTGTTTTTCACCTCTATTTTTCCATTTGAAAATGGATAAAGAGAAATTTGTACTCATGCATGAGCGCTTTATGATTCTTAAGACTTGGCTTGGAAGTTAGTGAATATATTTTCATTAAAATTTAGAAGTCTATTTATGTTTTTATTCCTGTTGTTTTAATTATTAAAAATCCGGCAACTAGTTATTTAAAAATAGCCAAATGAAACTGAAACGCTTGTTTCTGAAAAATGGAAGAATCCACTTTAACCTAGTCTATCTCGATTTCTGTCAAAGATATCAAAAAGTGAAAAACTAACAAAATGTTTTAACAAAATGTTTTTTTTAWTATGAAAAATATTATATTTGTTCACCTTTTTTTTATCTTTCACAGGAACCGAGATTGATAGGATCAAAGTTGGCGTAAATTCCTGTGTATCTCAAAAAATACCTCAATTGTTAGGCTTACTCCCTTGGGTTCAAGGCAATGGGTCAGAAATCGCGCCCCAGTAAACGTGAGATTTTAGAAAAAATTCGCTGCTGAATTATGTAACTGAGGATCAAACTTTTAAACGTTGGACAAAAAAATCACGCGTTGCAACTCCTTGATAAAAACTAATTAGGTAAAATCCATGTCAACTTGGAAATTATTAAATTTCTTCTGGCCTAAAGGTTATTTGGGGCGCGTTTTTTTGACCCGTTGGCTTGAACCCAAGTCTTTACTTACAAGGGAAGGTTTTTCAGTCAACGGTTGAGAATTTGCTCAAAATTTGTACAAAGGCACTTTTTTCGAACATGCTGAATCCGAATCCAAAAAAATTTTTAGCCCGTTCTCAAAAGGAGCCGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAGCCAAATGAAACTGAAAC</pcr_primer_p1>
		<pcr_primer_p2>AGCCTAACAATTGAGGTATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AATAGCCAAATGAAACTGAAACGCTTGTTTCTGAAAAATGGAAGAATCCACTTTAACCTAGTCTATCTCGATTTCTGTCAAAGATATCAAAAAGTGAAAAACTAACAAAATGTTTTAACAAAATGTTTTTTTTATTATGAAAAATATTATATTTGTTCACCTTTTTTTTATCTTTCACAGGAACCGAGATTGATAGGATCAAAGTTGGCGTAAATTCCTGTGTATCTCAAAAAATACCTCAATTGTTAGGCT</canonical_amplicon>
		<polymorphic_amplicon>AATAGCCAAATGAAACTGAAACGCTTGTTTCTGAAAAATGGAAGAATCCACTTTAACCTAGTCTATCTCGATTTCTGTCAAAGATATCAAAAAGTGAAAAACTAACAAAATGTTTTAACAAAATGTTTTTTTTAWTATGAAAAATATTATATTTGTTCACCTTTTTTTTATCTTTCACAGGAACCGAGATTGATAGGATCAAAGTTGGCGTAAATTCCTGTGTATCTCAAAAAATACCTCAATTGTTAGGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29027</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>160125</contig_pos>
        <strand></strand>
        <context>atattatatt[T/A]gttcaccttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AACAAAATGTTTTAACAAAATGTTTTTTTTATTATGAAAAATATTATATT</left_flank>
        <right_flank>GTTCACCTTTTTTTTATCTTTCACAGGAACCGAGATTGATAGGATCAAAG</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATGATAACTATTCAATTTCATTTTTCTATAAAATTTGGTTCCTTTCCGCCATTAGGCTAAAACTCAGCTCCTGCTTTTCGCAGATAATAATACCTTTCATTATACTCCTTTTTCTCTAAATCTCCTCACTCTTTTTCCTCATGATAATCATTTTTGTTTTTCACCTCTATTTTTCCATTTGAAAATGGATAAAGAGAAATTTGTACTCATGCATGAGCGCTTTATGATTCTTAAGACTTGGCTTGGAAGTTAGTGAATATATTTTCATTAAAATTTAGAAGTCTATTTATGTTTTTATTCCTGTTGTTTTAATTATTAAAAATCCGGCAACTAGTTATTTAAAAATAGCCAAATGAAACTGAAACGCTTGTTTCTGAAAAATGGAAGAATCCACTTTAACCTAGTCTATCTCGATTTCTGTCAAAGATATCAAAAAGTGAAAAACTAACAAAATGTTTTAACAAAATGTTTTTTTTATTATGAAAAATATTATATTTGTTCACCTTTTTTTTATCTTTCACAGGAACCGAGATTGATAGGATCAAAGTTGGCGTAAATTCCTGTGTATCTCAAAAAATACCTCAATTGTTAGGCTTACTCCCTTGGGTTCAAGGCAATGGGTCAGAAATCGCGCCCCAGTAAACGTGAGATTTTAGAAAAAATTCGCTGCTGAATTATGTAACTGAGGATCAAACTTTTAAACGTTGGACAAAAAAATCACGCGTTGCAACTCCTTGATAAAAACTAATTAGGTAAAATCCATGTCAACTTGGAAATTATTAAATTTCTTCTGGCCTAAAGGTTATTTGGGGCGCGTTTTTTTGACCCGTTGGCTTGAACCCAAGTCTTTACTTACAAGGGAAGGTTTTTCAGTCAACGGTTGAGAATTTGCTCAAAATTTGTACAAAGGCACTTTTTTCGAACATGCTGAATCCGAATCCAAAAAAATTTTTAGCCCGTTCTCAAAAGGAGCCGAAATATGGCCTTTGAAATTGCT</canonical>
            <polymorphic>TAAATGATAACTATTCAATTTCATTTTTCTATAAAATTTGGTTCCTTTCCGCCATTAGGCTAAAACTCAGCTCCTGCTTTTCGCAGATAATAATACCTTTCATTATACTCCTTTTTCTCTAAATCTCCTCACTCTTTTTCCTCATGATAATCATTTTTGTTTTTCACCTCTATTTTTCCATTTGAAAATGGATAAAGAGAAATTTGTACTCATGCATGAGCGCTTTATGATTCTTAAGACTTGGCTTGGAAGTTAGTGAATATATTTTCATTAAAATTTAGAAGTCTATTTATGTTTTTATTCCTGTTGTTTTAATTATTAAAAATCCGGCAACTAGTTATTTAAAAATAGCCAAATGAAACTGAAACGCTTGTTTCTGAAAAATGGAAGAATCCACTTTAACCTAGTCTATCTCGATTTCTGTCAAAGATATCAAAAAGTGAAAAACTAACAAAATGTTTTAACAAAATGTTTTTTTTATTATGAAAAATATTATATTWGTTCACCTTTTTTTTATCTTTCACAGGAACCGAGATTGATAGGATCAAAGTTGGCGTAAATTCCTGTGTATCTCAAAAAATACCTCAATTGTTAGGCTTACTCCCTTGGGTTCAAGGCAATGGGTCAGAAATCGCGCCCCAGTAAACGTGAGATTTTAGAAAAAATTCGCTGCTGAATTATGTAACTGAGGATCAAACTTTTAAACGTTGGACAAAAAAATCACGCGTTGCAACTCCTTGATAAAAACTAATTAGGTAAAATCCATGTCAACTTGGAAATTATTAAATTTCTTCTGGCCTAAAGGTTATTTGGGGCGCGTTTTTTTGACCCGTTGGCTTGAACCCAAGTCTTTACTTACAAGGGAAGGTTTTTCAGTCAACGGTTGAGAATTTGCTCAAAATTTGTACAAAGGCACTTTTTTCGAACATGCTGAATCCGAATCCAAAAAAATTTTTAGCCCGTTCTCAAAAGGAGCCGAAATATGGCCTTTGAAATTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAGCCAAATGAAACTGAAAC</pcr_primer_p1>
		<pcr_primer_p2>AGCCTAACAATTGAGGTATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AATAGCCAAATGAAACTGAAACGCTTGTTTCTGAAAAATGGAAGAATCCACTTTAACCTAGTCTATCTCGATTTCTGTCAAAGATATCAAAAAGTGAAAAACTAACAAAATGTTTTAACAAAATGTTTTTTTTATTATGAAAAATATTATATTTGTTCACCTTTTTTTTATCTTTCACAGGAACCGAGATTGATAGGATCAAAGTTGGCGTAAATTCCTGTGTATCTCAAAAAATACCTCAATTGTTAGGCT</canonical_amplicon>
		<polymorphic_amplicon>AATAGCCAAATGAAACTGAAACGCTTGTTTCTGAAAAATGGAAGAATCCACTTTAACCTAGTCTATCTCGATTTCTGTCAAAGATATCAAAAAGTGAAAAACTAACAAAATGTTTTAACAAAATGTTTTTTTTATTATGAAAAATATTATATTWGTTCACCTTTTTTTTATCTTTCACAGGAACCGAGATTGATAGGATCAAAGTTGGCGTAAATTCCTGTGTATCTCAAAAAATACCTCAATTGTTAGGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29037</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>179724</contig_pos>
        <strand></strand>
        <context>ctaaaacgtc[G/C]cggttgsgaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTC</left_flank>
        <right_flank>CGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTCATTGTAGAAGGTTCTGGACGTTTCGCAACTGTTCTGAAACGTCCCAGTTGCCAAATGTCGCTGCTCTGAAATATCCTAGGNNNNNNNNNNATTTCAAACTGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACAGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAA</canonical>
            <polymorphic>GGTCATTGTAGAAGGTTCTGGACGTTTCGCAACTGTTCTGAAACGTCCCAGTTGCCAAATGTCGCTGCTCTGAAATATCCTAGGNNNNNNNNNNATTTCAAACTGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACAGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCSCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>396 250 250 104</canonical_bands>
                <polymorphic_bands>396 354 250</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>396 234 234 104 16 16</canonical_bands>
                <polymorphic_bands>396 234 234 120 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTCAACCCATTTAAGACC</pcr_primer_p1>
		<pcr_primer_p2>TAAATCGGCTCAAAATAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>502</pcr_amplicon_size>
		<canonical_amplicon>GATTTCAACCCATTTAAGACCGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTA</canonical_amplicon>
		<polymorphic_amplicon>GATTTCAACCCATTTAAGACCGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCSCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29038</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>179731</contig_pos>
        <strand></strand>
        <context>gtcscggttg[G/C]gaaatgtcrc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTG</left_flank>
        <right_flank>GAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAGAAGGTTCTGGACGTTTCGCAACTGTTCTGAAACGTCCCAGTTGCCAAATGTCGCTGCTCTGAAATATCCTAGGNNNNNNNNNNATTTCAAACTGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACAGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGA</canonical>
            <polymorphic>GTAGAAGGTTCTGGACGTTTCGCAACTGTTCTGAAACGTCCCAGTTGCCAAATGTCGCTGCTCTGAAATATCCTAGGNNNNNNNNNNATTTCAAACTGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACAGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGSGAAATGTCGCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTCAACCCATTTAAGACC</pcr_primer_p1>
		<pcr_primer_p2>TAAATCGGCTCAAAATAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>502</pcr_amplicon_size>
		<canonical_amplicon>GATTTCAACCCATTTAAGACCGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGSGAAATGTCGCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTA</canonical_amplicon>
		<polymorphic_amplicon>GATTTCAACCCATTTAAGACCGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGSGAAATGTCGCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29039</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>179740</contig_pos>
        <strand></strand>
        <context>gsgaaatgtc[G/A]cattttcraa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTC</left_flank>
        <right_flank>CATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGGACGTTTCGCAACTGTTCTGAAACGTCCCAGTTGCCAAATGTCGCTGCTCTGAAATATCCTAGGNNNNNNNNNNATTTCAAACTGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACAGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTAT</canonical>
            <polymorphic>TCTGGACGTTTCGCAACTGTTCTGAAACGTCCCAGTTGCCAAATGTCGCTGCTCTGAAATATCCTAGGNNNNNNNNNNATTTCAAACTGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACAGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGGGAAATGTCRCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTCAACCCATTTAAGACC</pcr_primer_p1>
		<pcr_primer_p2>TAAATCGGCTCAAAATAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>502</pcr_amplicon_size>
		<canonical_amplicon>GATTTCAACCCATTTAAGACCGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGGGAAATGTCRCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTA</canonical_amplicon>
		<polymorphic_amplicon>GATTTCAACCCATTTAAGACCGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGGGAAATGTCRCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29040</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>179748</contig_pos>
        <strand></strand>
        <context>tcrcattttc[A/G]aaawaccctc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTC</left_flank>
        <right_flank>AAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGCAACTGTTCTGAAACGTCCCAGTTGCCAAATGTCGCTGCTCTGAAATATCCTAGGNNNNNNNNNNATTTCAAACTGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACAGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAGT</canonical>
            <polymorphic>TTTCGCAACTGTTCTGAAACGTCCCAGTTGCCAAATGTCGCTGCTCTGAAATATCCTAGGNNNNNNNNNNATTTCAAACTGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACAGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCRAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTCAACCCATTTAAGACC</pcr_primer_p1>
		<pcr_primer_p2>TAAATCGGCTCAAAATAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>502</pcr_amplicon_size>
		<canonical_amplicon>GATTTCAACCCATTTAAGACCGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTA</canonical_amplicon>
		<polymorphic_amplicon>GATTTCAACCCATTTAAGACCGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCRAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29041</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>179752</contig_pos>
        <strand></strand>
        <context>attttcraaa[T/A]accctcwgaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAA</left_flank>
        <right_flank>ACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGAC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAACTGTTCTGAAACGTCCCAGTTGCCAAATGTCGCTGCTCTGAAATATCCTAGGNNNNNNNNNNATTTCAAACTGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACAGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAGTTTAA</canonical>
            <polymorphic>GCAACTGTTCTGAAACGTCCCAGTTGCCAAATGTCGCTGCTCTGAAATATCCTAGGNNNNNNNNNNATTTCAAACTGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACAGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAAWACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAGTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTCAACCCATTTAAGACC</pcr_primer_p1>
		<pcr_primer_p2>TAAATCGGCTCAAAATAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>502</pcr_amplicon_size>
		<canonical_amplicon>GATTTCAACCCATTTAAGACCGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTA</canonical_amplicon>
		<polymorphic_amplicon>GATTTCAACCCATTTAAGACCGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAAWACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29042</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>179759</contig_pos>
        <strand></strand>
        <context>aaawaccctc[A/T]gaagcckatc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTC</left_flank>
        <right_flank>GAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGAAACGTCCCAGTTGCCAAATGTCGCTGCTCTGAAATATCCTAGGNNNNNNNNNNATTTCAAACTGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACAGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAGTTTAAGCTATTT</canonical>
            <polymorphic>TTCTGAAACGTCCCAGTTGCCAAATGTCGCTGCTCTGAAATATCCTAGGNNNNNNNNNNATTTCAAACTGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACAGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCWGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAGTTTAAGCTATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 250 247</canonical_bands>
                <polymorphic_bands>753 247</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTCAACCCATTTAAGACC</pcr_primer_p1>
		<pcr_primer_p2>TAAATCGGCTCAAAATAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>502</pcr_amplicon_size>
		<canonical_amplicon>GATTTCAACCCATTTAAGACCGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTA</canonical_amplicon>
		<polymorphic_amplicon>GATTTCAACCCATTTAAGACCGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCWGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29043</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>179766</contig_pos>
        <strand></strand>
        <context>ctcwgaagcc[G/T]atctcgattt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCC</left_flank>
        <right_flank>ATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGTCCCAGTTGCCAAATGTCGCTGCTCTGAAATATCCTAGGNNNNNNNNNNATTTCAAACTGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACAGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAGTTTAAGCTATTTTAGGCCG</canonical>
            <polymorphic>ACGTCCCAGTTGCCAAATGTCGCTGCTCTGAAATATCCTAGGNNNNNNNNNNATTTCAAACTGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACAGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCKATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAGTTTAAGCTATTTTAGGCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>501 250 249</canonical_bands>
                <polymorphic_bands>751 249</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTCAACCCATTTAAGACC</pcr_primer_p1>
		<pcr_primer_p2>TAAATCGGCTCAAAATAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>502</pcr_amplicon_size>
		<canonical_amplicon>GATTTCAACCCATTTAAGACCGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTA</canonical_amplicon>
		<polymorphic_amplicon>GATTTCAACCCATTTAAGACCGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCKATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29044</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>179886</contig_pos>
        <strand>+</strand>
        <context>CTGACGAAGA[A/T]TATTTCGGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGA</left_flank>
        <right_flank>TATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGG</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCCTATTTCGGACAGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAGTTTAAGCTATTTTAGGCCGAAGTTGGGTTTCATTTTTCGAGCGATTTTTACCGATTTTCGCTCATTTCCAACCAAAAATGTTCCCCAATTTTCAGGAGACCTCAACGTCATCGCCCCGATCATCTCAAACTTCTTCCTC</canonical>
            <polymorphic>AGCCTATTTCGGACAGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAWTATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAGTTTAAGCTATTTTAGGCCGAAGTTGGGTTTCATTTTTCGAGCGATTTTTACCGATTTTCGCTCATTTCCAACCAAAAATGTTCCCCAATTTTCAGGAGACCTCAACGTCATCGCCCCGATCATCTCAAACTTCTTCCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTTAAGACCGATTTTCTGA</pcr_primer_p1>
		<pcr_primer_p2>GCATTCATTGTTAAGTATTCTTTG</pcr_primer_p2>
		<pcr_amplicon_size>619</pcr_amplicon_size>
		<canonical_amplicon>CATTTAAGACCGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGC</canonical_amplicon>
		<polymorphic_amplicon>CATTTAAGACCGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAWTATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29045</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>179931</contig_pos>
        <strand>+</strand>
        <context>TTTCGGCGCA[G/T]GGTGGTCTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAGAATATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCA</left_flank>
        <right_flank>GGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAGTTTAAGCTATTTTAGGCCGAAGTTGGGTTTCATTTTTCGAGCGATTTTTACCGATTTTCGCTCATTTCCAACCAAAAATGTTCCCCAATTTTCAGGAGACCTCAACGTCATCGCCCCGATCATCTCAAACTTCTTCCTCGGCTCGTATGCCTTGATAAACTACGCGTGTTTCGACCAGTCGTTC</canonical>
            <polymorphic>CGATTTTCTGAAAGTTGTGAAACGTCGCAGTTCTGAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAKGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAGTTTAAGCTATTTTAGGCCGAAGTTGGGTTTCATTTTTCGAGCGATTTTTACCGATTTTCGCTCATTTCCAACCAAAAATGTTCCCCAATTTTCAGGAGACCTCAACGTCATCGCCCCGATCATCTCAAACTTCTTCCTCGGCTCGTATGCCTTGATAAACTACGCGTGTTTCGACCAGTCGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTAAGACCGATTTTCTGA</pcr_primer_p1>
		<pcr_primer_p2>GCATTCATTGTTAAGTATTCTTTG</pcr_primer_p2>
		<pcr_amplicon_size>619</pcr_amplicon_size>
		<canonical_amplicon>AGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGC</canonical_amplicon>
		<polymorphic_amplicon>AKGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29046</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>179996</contig_pos>
        <strand>+</strand>
        <context>GAAACATCCG[A/G]GTKGCGAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCG</left_flank>
        <right_flank>GTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAGTTTAAGCTATTTTAGGCCGAAGTTGGGTTTCATTTTTCGAGCGATTTTTACCGATTTTCGCTCATTTCCAACCAAAAATGTTCCCCAATTTTCAGGAGACCTCAACGTCATCGCCCCGATCATCTCAAACTTCTTCCTCGGCTCGTATGCCTTGATAAACTACGCGTGTTTCGACCAGTCGTTCGCCGATTCGCCAGGTTTCCGCCCCGGTTTCACCTACTACAATATGTGGATTTCGCTGATCGGCGC</canonical>
            <polymorphic>CAAAATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGRGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAGTTTAAGCTATTTTAGGCCGAAGTTGGGTTTCATTTTTCGAGCGATTTTTACCGATTTTCGCTCATTTCCAACCAAAAATGTTCCCCAATTTTCAGGAGACCTCAACGTCATCGCCCCGATCATCTCAAACTTCTTCCTCGGCTCGTATGCCTTGATAAACTACGCGTGTTTCGACCAGTCGTTCGCCGATTCGCCAGGTTTCCGCCCCGGTTTCACCTACTACAATATGTGGATTTCGCTGATCGGCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>498 460 42</canonical_bands>
                <polymorphic_bands>958 42</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>498 448 42 12</canonical_bands>
                <polymorphic_bands>946 42 12</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>366 351 110 87 44 42</canonical_bands>
                <polymorphic_bands>366 351 154 87 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTATTTTGAGCCGATTTAAG</pcr_primer_p1>
		<pcr_primer_p2>ATCGGTCTAAATCGAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>187</pcr_amplicon_size>
		<canonical_amplicon>GACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGAT</canonical_amplicon>
		<polymorphic_amplicon>GACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGRGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29047</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>179999</contig_pos>
        <strand>+</strand>
        <context>ACATCCGRGT[G/T]GCGAAATGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGT</left_flank>
        <right_flank>GCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAGTTTAAGCTATTTTAGGCCGAAGTTGGGTTTCATTTTTCGAGCGATTTTTACCGATTTTCGCTCATTTCCAACCAAAAATGTTCCCCAATTTTCAGGAGACCTCAACGTCATCGCCCCGATCATCTCAAACTTCTTCCTCGGCTCGTATGCCTTGATAAACTACGCGTGTTTCGACCAGTCGTTCGCCGATTCGCCAGGTTTCCGCCCCGGTTTCACCTACTACAATATGTGGATTTCGCTGATCGGCGCGAT</canonical>
            <polymorphic>AATAACCTCAGACGCCGATCTCGAACTATTTTGAGCCGATTTCAAACCGTTTTAGACCGATTTTGTAAAAAGTTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGGAATGTCACATTTTCGAAAAATCCTCTAAAGCCTATTTCGGACTGTTTTGAATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTKGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAGTTTAAGCTATTTTAGGCCGAAGTTGGGTTTCATTTTTCGAGCGATTTTTACCGATTTTCGCTCATTTCCAACCAAAAATGTTCCCCAATTTTCAGGAGACCTCAACGTCATCGCCCCGATCATCTCAAACTTCTTCCTCGGCTCGTATGCCTTGATAAACTACGCGTGTTTCGACCAGTCGTTCGCCGATTCGCCAGGTTTCCGCCCCGGTTTCACCTACTACAATATGTGGATTTCGCTGATCGGCGCGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>234 160 116 95 87 85 64 61 47 21 16 14</canonical_bands>
                <polymorphic_bands>234 160 159 116 87 85 61 47 21 16 14</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTATTTTGAGCCGATTTAAG</pcr_primer_p1>
		<pcr_primer_p2>ATCGGTCTAAATCGAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>187</pcr_amplicon_size>
		<canonical_amplicon>GACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGAT</canonical_amplicon>
		<polymorphic_amplicon>GACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTKGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29048</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>180158</contig_pos>
        <strand>+</strand>
        <context>gtcTCTTACA[G/T]Cccattttta</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACA</left_flank>
        <right_flank>CCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAGTTTAAGCTATTTTAGGCCGAAGTTGGGTTTCATTTTTCGAGCGATTTTTACCGATTTTCGCTCATTTCCAACCAAAAATGTTCCCCAATTTTCAGGAGACCTCAACGTCATCGCCCCGATCATCTCAAACTTCTTCCTCGGCTCGTATGCCTTGATAAACTACGCGTGTTTCGACCAGTCGTTCGCCGATTCGCCAGGTTTCCGCCCCGGTTTCACCTACTACAATATGTGGATTTCGCTGATCGGCGCGATTCTCTGCGTCTTCGTGATGTTCATTATCGATTGGTTCTCGGCACTGGTCACTTTCTTCTGTTTCGGAGCCATTTTCATGTATCTCCTTCATCGGAAGCCGGATGTCAATTGGGGATCATCGACACAGGCGCACAGTTATAAGAATGCGCTTTCGGCGAT</canonical>
            <polymorphic>ATCGATTTCAACCCATTTAAGACCGATTTTCCGAAAGTTGTGAAACGTCGCAGTTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACAKCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAGTTTAAGCTATTTTAGGCCGAAGTTGGGTTTCATTTTTCGAGCGATTTTTACCGATTTTCGCTCATTTCCAACCAAAAATGTTCCCCAATTTTCAGGAGACCTCAACGTCATCGCCCCGATCATCTCAAACTTCTTCCTCGGCTCGTATGCCTTGATAAACTACGCGTGTTTCGACCAGTCGTTCGCCGATTCGCCAGGTTTCCGCCCCGGTTTCACCTACTACAATATGTGGATTTCGCTGATCGGCGCGATTCTCTGCGTCTTCGTGATGTTCATTATCGATTGGTTCTCGGCACTGGTCACTTTCTTCTGTTTCGGAGCCATTTTCATGTATCTCCTTCATCGGAAGCCGGATGTCAATTGGGGATCATCGACACAGGCGCACAGTTATAAGAATGCGCTTTCGGCGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATTTAGACCGATTTTGTAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAGGTCTCCTGAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>286</pcr_amplicon_size>
		<canonical_amplicon>CGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAGTTTAAGCTATTTTAGGCCGAAGTTGGGTTTCATTTTTCGAGCGATTTTTACCGATTTTCGCTCATTTCCAACCAAAAATGTTCCCCAATTTTCAGGAGACCTCAA</canonical_amplicon>
		<polymorphic_amplicon>CGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACAKCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAGTTTAAGCTATTTTAGGCCGAAGTTGGGTTTCATTTTTCGAGCGATTTTTACCGATTTTCGCTCATTTCCAACCAAAAATGTTCCCCAATTTTCAGGAGACCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29049</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>180211</contig_pos>
        <strand></strand>
        <context>ctattttaag[T/C]tgtttcaggc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAG</left_flank>
        <right_flank>TGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAGTTTAAGCTATTTTA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAGTTTAAGCTATTTTAGGCCGAAGTTGGGTTTCATTTTTCGAGCGATTTTTACCGATTTTCGCTCATTTCCAACCAAAAATGTTCCCCAATTTTCAGGAGACCTCAACGTCATCGCCCCGATCATCTCAAACTTCTTCCTCGGCTCGTATGCCTTGATAAACTACGCGTGTTTCGACCAGTCGTTCGCCGATTCGCCAGGTTTCCGCCCCGGTTTCACCTACTACAATATGTGGATTTCGCTGATCGGCGCGATTCTCTGCGTCTTCGTGATGTTCATTATCGATTGGTTCTCGGCACTGGTCACTTTCTTCTGTTTCGGAGCCATTTTCATGTATCTCCTTCATCGGAAGCCGGATGTCAATTGGGGATCATCGACACAGGCGCACAGTTATAAGAATGCGCTTTCGGCGATGATTAAGGTACGGTTTTCGGGGGTTCTAAGGCTAAAAAAATGGCTATTTTAAG</canonical>
            <polymorphic>TTCTAAAACGTCGCGGTTGGGAAATGTCGCATTTTCAAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGYTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAGTTTAAGCTATTTTAGGCCGAAGTTGGGTTTCATTTTTCGAGCGATTTTTACCGATTTTCGCTCATTTCCAACCAAAAATGTTCCCCAATTTTCAGGAGACCTCAACGTCATCGCCCCGATCATCTCAAACTTCTTCCTCGGCTCGTATGCCTTGATAAACTACGCGTGTTTCGACCAGTCGTTCGCCGATTCGCCAGGTTTCCGCCCCGGTTTCACCTACTACAATATGTGGATTTCGCTGATCGGCGCGATTCTCTGCGTCTTCGTGATGTTCATTATCGATTGGTTCTCGGCACTGGTCACTTTCTTCTGTTTCGGAGCCATTTTCATGTATCTCCTTCATCGGAAGCCGGATGTCAATTGGGGATCATCGACACAGGCGCACAGTTATAAGAATGCGCTTTCGGCGATGATTAAGGTACGGTTTTCGGGGGTTCTAAGGCTAAAAAAATGGCTATTTTAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATTTAGACCGATTTTGTAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAGGTCTCCTGAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>286</pcr_amplicon_size>
		<canonical_amplicon>CGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAGTTTAAGCTATTTTAGGCCGAAGTTGGGTTTCATTTTTCGAGCGATTTTTACCGATTTTCGCTCATTTCCAACCAAAAATGTTCCCCAATTTTCAGGAGACCTCAA</canonical_amplicon>
		<polymorphic_amplicon>CGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGYTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAGTTTAAGCTATTTTAGGCCGAAGTTGGGTTTCATTTTTCGAGCGATTTTTACCGATTTTCGCTCATTTCCAACCAAAAATGTTCCCCAATTTTCAGGAGACCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29050</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>180247</contig_pos>
        <strand></strand>
        <context>ttattaccga[G/T]tttaagctat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGA</left_flank>
        <right_flank>TTTAAGCTATTTTAGGCCGAAGTTGGGTTTCATTTTTCGAGCGATTTTTA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAGTTTAAGCTATTTTAGGCCGAAGTTGGGTTTCATTTTTCGAGCGATTTTTACCGATTTTCGCTCATTTCCAACCAAAAATGTTCCCCAATTTTCAGGAGACCTCAACGTCATCGCCCCGATCATCTCAAACTTCTTCCTCGGCTCGTATGCCTTGATAAACTACGCGTGTTTCGACCAGTCGTTCGCCGATTCGCCAGGTTTCCGCCCCGGTTTCACCTACTACAATATGTGGATTTCGCTGATCGGCGCGATTCTCTGCGTCTTCGTGATGTTCATTATCGATTGGTTCTCGGCACTGGTCACTTTCTTCTGTTTCGGAGCCATTTTCATGTATCTCCTTCATCGGAAGCCGGATGTCAATTGGGGATCATCGACACAGGCGCACAGTTATAAGAATGCGCTTTCGGCGATGATTAAGGTACGGTTTTCGGGGGTTCTAAGGCTAAAAAAATGGCTATTTTAAGCTGAAAAAAATGGTCATTTTAGTGCTGAAAATGCTC</canonical>
            <polymorphic>AAAATACCCTCAGAAGCCGATCTCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAKTTTAAGCTATTTTAGGCCGAAGTTGGGTTTCATTTTTCGAGCGATTTTTACCGATTTTCGCTCATTTCCAACCAAAAATGTTCCCCAATTTTCAGGAGACCTCAACGTCATCGCCCCGATCATCTCAAACTTCTTCCTCGGCTCGTATGCCTTGATAAACTACGCGTGTTTCGACCAGTCGTTCGCCGATTCGCCAGGTTTCCGCCCCGGTTTCACCTACTACAATATGTGGATTTCGCTGATCGGCGCGATTCTCTGCGTCTTCGTGATGTTCATTATCGATTGGTTCTCGGCACTGGTCACTTTCTTCTGTTTCGGAGCCATTTTCATGTATCTCCTTCATCGGAAGCCGGATGTCAATTGGGGATCATCGACACAGGCGCACAGTTATAAGAATGCGCTTTCGGCGATGATTAAGGTACGGTTTTCGGGGGTTCTAAGGCTAAAAAAATGGCTATTTTAAGCTGAAAAAAATGGTCATTTTAGTGCTGAAAATGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATTTAGACCGATTTTGTAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAGGTCTCCTGAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>286</pcr_amplicon_size>
		<canonical_amplicon>CGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAGTTTAAGCTATTTTAGGCCGAAGTTGGGTTTCATTTTTCGAGCGATTTTTACCGATTTTCGCTCATTTCCAACCAAAAATGTTCCCCAATTTTCAGGAGACCTCAA</canonical_amplicon>
		<polymorphic_amplicon>CGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAKTTTAAGCTATTTTAGGCCGAAGTTGGGTTTCATTTTTCGAGCGATTTTTACCGATTTTCGCTCATTTCCAACCAAAAATGTTCCCCAATTTTCAGGAGACCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29051</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>180269</contig_pos>
        <strand></strand>
        <context>ttaggccgaa[G/A]ttgggtttca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGCCAATTTTGGAGTTGTTTATTACCGAGTTTAAGCTATTTTAGGCCGAA</left_flank>
        <right_flank>TTGGGTTTCATTTTTCGAGCGATTTTTACCGATTTTCGCTCATTTCCAAC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAGTTTAAGCTATTTTAGGCCGAAGTTGGGTTTCATTTTTCGAGCGATTTTTACCGATTTTCGCTCATTTCCAACCAAAAATGTTCCCCAATTTTCAGGAGACCTCAACGTCATCGCCCCGATCATCTCAAACTTCTTCCTCGGCTCGTATGCCTTGATAAACTACGCGTGTTTCGACCAGTCGTTCGCCGATTCGCCAGGTTTCCGCCCCGGTTTCACCTACTACAATATGTGGATTTCGCTGATCGGCGCGATTCTCTGCGTCTTCGTGATGTTCATTATCGATTGGTTCTCGGCACTGGTCACTTTCTTCTGTTTCGGAGCCATTTTCATGTATCTCCTTCATCGGAAGCCGGATGTCAATTGGGGATCATCGACACAGGCGCACAGTTATAAGAATGCGCTTTCGGCGATGATTAAGGTACGGTTTTCGGGGGTTCTAAGGCTAAAAAAATGGCTATTTTAAGCTGAAAAAAATGGTCATTTTAGTGCTGAAAATGCTCCAAAAACATGATTTTTGAGACC</canonical>
            <polymorphic>TCGATTTTGAATCTATTTCAAGTCATTTTAGACCGATTTGTAGAAGTTGCGAAACGTCGCGGTTCTAAAACGTCCTAGTTGCGAAATGTCACATTTACAAAAACACCTGACGAAGAATATTTCGGACTATTTTGAGCCGATTTAAGCCCGATTTCGGCGCAGGGTGGTCTATTTTGCAACCGGACGTTCTAGAACTAGCCATTTCGCAACGGTTCTGAAACATCCGGGTGGCGAAATGTCGTATTTTCAAAGAATACTTAACAATGAATGCCTATTTGGACTATTTCGGACCAATTTCGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAGTTTAAGCTATTTTAGGCCGAARTTGGGTTTCATTTTTCGAGCGATTTTTACCGATTTTCGCTCATTTCCAACCAAAAATGTTCCCCAATTTTCAGGAGACCTCAACGTCATCGCCCCGATCATCTCAAACTTCTTCCTCGGCTCGTATGCCTTGATAAACTACGCGTGTTTCGACCAGTCGTTCGCCGATTCGCCAGGTTTCCGCCCCGGTTTCACCTACTACAATATGTGGATTTCGCTGATCGGCGCGATTCTCTGCGTCTTCGTGATGTTCATTATCGATTGGTTCTCGGCACTGGTCACTTTCTTCTGTTTCGGAGCCATTTTCATGTATCTCCTTCATCGGAAGCCGGATGTCAATTGGGGATCATCGACACAGGCGCACAGTTATAAGAATGCGCTTTCGGCGATGATTAAGGTACGGTTTTCGGGGGTTCTAAGGCTAAAAAAATGGCTATTTTAAGCTGAAAAAAATGGTCATTTTAGTGCTGAAAATGCTCCAAAAACATGATTTTTGAGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATTTAGACCGATTTTGTAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAGGTCTCCTGAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>286</pcr_amplicon_size>
		<canonical_amplicon>CGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAGTTTAAGCTATTTTAGGCCGAAGTTGGGTTTCATTTTTCGAGCGATTTTTACCGATTTTCGCTCATTTCCAACCAAAAATGTTCCCCAATTTTCAGGAGACCTCAA</canonical_amplicon>
		<polymorphic_amplicon>CGATTTAGACCGATTTTGTAAAAAAGTGCGAAATGACCGGTTCTAAAACGTCCGAGTTGCGAAATGTCGTATTTTCAAAATGTCTCTTACATCCCATTTTTAACCGATTTTTGTGATTTTTGGACCATTTTAGGCTATTTTAAGTTGTTTCAGGCCAATTTTGGAGTTGTTTATTACCGAGTTTAAGCTATTTTAGGCCGAARTTGGGTTTCATTTTTCGAGCGATTTTTACCGATTTTCGCTCATTTCCAACCAAAAATGTTCCCCAATTTTCAGGAGACCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29052</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>200392</contig_pos>
        <strand></strand>
        <context>TCttttagaa[G/A]tgttcagggt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAA</left_flank>
        <right_flank>TGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATTTGAGCTCGAAGTGCTGGTATACCCTGGATATCGCCGTTTTATGGTAAAACGGCTTGTTTTATTACATTTTTCTCTGCTTCATATCTTTCTCTAACTATCTTCTTTCCTATAACTATATTCATTTTCGGATAACTTCCAGATATGCCGTGCCCATTAAAATGTCACGGAGGTCCTGGCTACGCATCCCCTGCGGATGCCATTAAAGGTCCCAGAGAAGAAGTTCTATTTGTGACCGCTCCACACGCCCGAGATGGACCTGATGCCATATTTACGGTAAATGTGAATCCGGAGAGTGAGACGTTTTGTCAGGTAAGACGATTTTGATGATTATATTTCTGGAAAATAAAGAAAGATGAATGATTTGCGTTCACGATACCAGGTAAATTTGAAGATCGTGAAACAGCAGAATTTGAAATTTAGTTGTTTAAAACTTACTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGCAAATAGCTTCATATATACCTAGTTCCTGAAACAGGAAAATTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGTCGCCACACCCCCATTTTGTTACATCATCCACACAATCAAACAATATGTTCCTTAAATTCGTTTGTTACAGATAATCAGTCGAGTGGATGTTCCAAACATTGGAGACGAAGTTCATCATACTGGCTGGAACGCTTGCTCATCCTGTCATGATAAACCGACTGAGAAGAGGTAGGAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCAGAAAGTTGTCAACTAACAAACTGTT</canonical>
            <polymorphic>ATATTTGAGCTCGAAGTGCTGGTATACCCTGGATATCGCCGTTTTATGGTAAAACGGCTTGTTTTATTACATTTTTCTCTGCTTCATATCTTTCTCTAACTATCTTCTTTCCTATAACTATATTCATTTTCGGATAACTTCCAGATATGCCGTGCCCATTAAAATGTCACGGAGGTCCTGGCTACGCATCCCCTGCGGATGCCATTAAAGGTCCCAGAGAAGAAGTTCTATTTGTGACCGCTCCACACGCCCGAGATGGACCTGATGCCATATTTACGGTAAATGTGAATCCGGAGAGTGAGACGTTTTGTCAGGTAAGACGATTTTGATGATTATATTTCTGGAAAATAAAGAAAGATGAATGATTTGCGTTCACGATACCAGGTAAATTTGAAGATCGTGAAACAGCAGAATTTGAAATTTAGTTGTTTAAAACTTACTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAARTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGCAAATAGCTTCATATATACCTAGTTCCTGAAACAGGAAAATTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGTCGCCACACCCCCATTTTGTTACATCATCCACACAATCAAACAATATGTTCCTTAAATTCGTTTGTTACAGATAATCAGTCGAGTGGATGTTCCAAACATTGGAGACGAAGTTCATCATACTGGCTGGAACGCTTGCTCATCCTGTCATGATAAACCGACTGAGAAGAGGTAGGAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCAGAAAGTTGTCAACTAACAAACTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>236 136 100 78 75 67 53 50 40 27 23 22 18 15 14 13 9 9 9 2 2 2</canonical_bands>
                <polymorphic_bands>236 136 100 78 75 67 53 50 40 31 27 23 18 15 14 13 9 9 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGTTAAAAGGGGGTATAGGTT</pcr_primer_p1>
		<pcr_primer_p2>GCGCAAGTCATTAAGATACTACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGC</canonical_amplicon>
		<polymorphic_amplicon>CTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAARTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29053</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>200410</contig_pos>
        <strand></strand>
        <context>ggtgttatat[C/A]attttgtaga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATAT</left_flank>
        <right_flank>ATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGTATACCCTGGATATCGCCGTTTTATGGTAAAACGGCTTGTTTTATTACATTTTTCTCTGCTTCATATCTTTCTCTAACTATCTTCTTTCCTATAACTATATTCATTTTCGGATAACTTCCAGATATGCCGTGCCCATTAAAATGTCACGGAGGTCCTGGCTACGCATCCCCTGCGGATGCCATTAAAGGTCCCAGAGAAGAAGTTCTATTTGTGACCGCTCCACACGCCCGAGATGGACCTGATGCCATATTTACGGTAAATGTGAATCCGGAGAGTGAGACGTTTTGTCAGGTAAGACGATTTTGATGATTATATTTCTGGAAAATAAAGAAAGATGAATGATTTGCGTTCACGATACCAGGTAAATTTGAAGATCGTGAAACAGCAGAATTTGAAATTTAGTTGTTTAAAACTTACTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGCAAATAGCTTCATATATACCTAGTTCCTGAAACAGGAAAATTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGTCGCCACACCCCCATTTTGTTACATCATCCACACAATCAAACAATATGTTCCTTAAATTCGTTTGTTACAGATAATCAGTCGAGTGGATGTTCCAAACATTGGAGACGAAGTTCATCATACTGGCTGGAACGCTTGCTCATCCTGTCATGATAAACCGACTGAGAAGAGGTAGGAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCAGAAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGA</canonical>
            <polymorphic>CTGGTATACCCTGGATATCGCCGTTTTATGGTAAAACGGCTTGTTTTATTACATTTTTCTCTGCTTCATATCTTTCTCTAACTATCTTCTTTCCTATAACTATATTCATTTTCGGATAACTTCCAGATATGCCGTGCCCATTAAAATGTCACGGAGGTCCTGGCTACGCATCCCCTGCGGATGCCATTAAAGGTCCCAGAGAAGAAGTTCTATTTGTGACCGCTCCACACGCCCGAGATGGACCTGATGCCATATTTACGGTAAATGTGAATCCGGAGAGTGAGACGTTTTGTCAGGTAAGACGATTTTGATGATTATATTTCTGGAAAATAAAGAAAGATGAATGATTTGCGTTCACGATACCAGGTAAATTTGAAGATCGTGAAACAGCAGAATTTGAAATTTAGTTGTTTAAAACTTACTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATMATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGCAAATAGCTTCATATATACCTAGTTCCTGAAACAGGAAAATTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGTCGCCACACCCCCATTTTGTTACATCATCCACACAATCAAACAATATGTTCCTTAAATTCGTTTGTTACAGATAATCAGTCGAGTGGATGTTCCAAACATTGGAGACGAAGTTCATCATACTGGCTGGAACGCTTGCTCATCCTGTCATGATAAACCGACTGAGAAGAGGTAGGAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCAGAAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGTTAAAAGGGGGTATAGGTT</pcr_primer_p1>
		<pcr_primer_p2>GCGCAAGTCATTAAGATACTACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGC</canonical_amplicon>
		<polymorphic_amplicon>CTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATMATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29054</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>200421</contig_pos>
        <strand></strand>
        <context>attttgtaga[A/G]attttcaaga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGA</left_flank>
        <right_flank>ATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGATATCGCCGTTTTATGGTAAAACGGCTTGTTTTATTACATTTTTCTCTGCTTCATATCTTTCTCTAACTATCTTCTTTCCTATAACTATATTCATTTTCGGATAACTTCCAGATATGCCGTGCCCATTAAAATGTCACGGAGGTCCTGGCTACGCATCCCCTGCGGATGCCATTAAAGGTCCCAGAGAAGAAGTTCTATTTGTGACCGCTCCACACGCCCGAGATGGACCTGATGCCATATTTACGGTAAATGTGAATCCGGAGAGTGAGACGTTTTGTCAGGTAAGACGATTTTGATGATTATATTTCTGGAAAATAAAGAAAGATGAATGATTTGCGTTCACGATACCAGGTAAATTTGAAGATCGTGAAACAGCAGAATTTGAAATTTAGTTGTTTAAAACTTACTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGCAAATAGCTTCATATATACCTAGTTCCTGAAACAGGAAAATTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGTCGCCACACCCCCATTTTGTTACATCATCCACACAATCAAACAATATGTTCCTTAAATTCGTTTGTTACAGATAATCAGTCGAGTGGATGTTCCAAACATTGGAGACGAAGTTCATCATACTGGCTGGAACGCTTGCTCATCCTGTCATGATAAACCGACTGAGAAGAGGTAGGAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCAGAAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGAATTTTGTTAGT</canonical>
            <polymorphic>TGGATATCGCCGTTTTATGGTAAAACGGCTTGTTTTATTACATTTTTCTCTGCTTCATATCTTTCTCTAACTATCTTCTTTCCTATAACTATATTCATTTTCGGATAACTTCCAGATATGCCGTGCCCATTAAAATGTCACGGAGGTCCTGGCTACGCATCCCCTGCGGATGCCATTAAAGGTCCCAGAGAAGAAGTTCTATTTGTGACCGCTCCACACGCCCGAGATGGACCTGATGCCATATTTACGGTAAATGTGAATCCGGAGAGTGAGACGTTTTGTCAGGTAAGACGATTTTGATGATTATATTTCTGGAAAATAAAGAAAGATGAATGATTTGCGTTCACGATACCAGGTAAATTTGAAGATCGTGAAACAGCAGAATTTGAAATTTAGTTGTTTAAAACTTACTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGARATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGCAAATAGCTTCATATATACCTAGTTCCTGAAACAGGAAAATTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGTCGCCACACCCCCATTTTGTTACATCATCCACACAATCAAACAATATGTTCCTTAAATTCGTTTGTTACAGATAATCAGTCGAGTGGATGTTCCAAACATTGGAGACGAAGTTCATCATACTGGCTGGAACGCTTGCTCATCCTGTCATGATAAACCGACTGAGAAGAGGTAGGAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCAGAAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGAATTTTGTTAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>358 198 169 110 69 29 24 24 12 7</canonical_bands>
                <polymorphic_bands>358 198 169 139 69 24 24 12 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>358 198 110 91 78 69 24 24 23 12 7 6</canonical_bands>
                <polymorphic_bands>358 198 133 91 78 69 24 24 12 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGTTAAAAGGGGGTATAGGTT</pcr_primer_p1>
		<pcr_primer_p2>GCGCAAGTCATTAAGATACTACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGC</canonical_amplicon>
		<polymorphic_amplicon>CTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGARATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29055</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>200485</contig_pos>
        <strand></strand>
        <context>agcaagttat[G/T]cttcAAAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTAT</left_flank>
        <right_flank>CTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTAACTATCTTCTTTCCTATAACTATATTCATTTTCGGATAACTTCCAGATATGCCGTGCCCATTAAAATGTCACGGAGGTCCTGGCTACGCATCCCCTGCGGATGCCATTAAAGGTCCCAGAGAAGAAGTTCTATTTGTGACCGCTCCACACGCCCGAGATGGACCTGATGCCATATTTACGGTAAATGTGAATCCGGAGAGTGAGACGTTTTGTCAGGTAAGACGATTTTGATGATTATATTTCTGGAAAATAAAGAAAGATGAATGATTTGCGTTCACGATACCAGGTAAATTTGAAGATCGTGAAACAGCAGAATTTGAAATTTAGTTGTTTAAAACTTACTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGCAAATAGCTTCATATATACCTAGTTCCTGAAACAGGAAAATTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGTCGCCACACCCCCATTTTGTTACATCATCCACACAATCAAACAATATGTTCCTTAAATTCGTTTGTTACAGATAATCAGTCGAGTGGATGTTCCAAACATTGGAGACGAAGTTCATCATACTGGCTGGAACGCTTGCTCATCCTGTCATGATAAACCGACTGAGAAGAGGTAGGAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCAGAAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGAATTTTGTTAGTTGATAATTTTTGATAACTAGTGCAGAAAGCATGATAACTTGGGTCAAAGTAGACGCTCCTTGTG</canonical>
            <polymorphic>CTCTAACTATCTTCTTTCCTATAACTATATTCATTTTCGGATAACTTCCAGATATGCCGTGCCCATTAAAATGTCACGGAGGTCCTGGCTACGCATCCCCTGCGGATGCCATTAAAGGTCCCAGAGAAGAAGTTCTATTTGTGACCGCTCCACACGCCCGAGATGGACCTGATGCCATATTTACGGTAAATGTGAATCCGGAGAGTGAGACGTTTTGTCAGGTAAGACGATTTTGATGATTATATTTCTGGAAAATAAAGAAAGATGAATGATTTGCGTTCACGATACCAGGTAAATTTGAAGATCGTGAAACAGCAGAATTTGAAATTTAGTTGTTTAAAACTTACTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATKCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGCAAATAGCTTCATATATACCTAGTTCCTGAAACAGGAAAATTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGTCGCCACACCCCCATTTTGTTACATCATCCACACAATCAAACAATATGTTCCTTAAATTCGTTTGTTACAGATAATCAGTCGAGTGGATGTTCCAAACATTGGAGACGAAGTTCATCATACTGGCTGGAACGCTTGCTCATCCTGTCATGATAAACCGACTGAGAAGAGGTAGGAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCAGAAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGAATTTTGTTAGTTGATAATTTTTGATAACTAGTGCAGAAAGCATGATAACTTGGGTCAAAGTAGACGCTCCTTGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCANNNNNTGC</site>
                <isoschizomers>
                    <enzyme>ApaBI</enzyme>
                    <enzyme>BstAPI</enzyme>
                </isoschizomers>
                <canonical_bands>502 398 100</canonical_bands>
                <polymorphic_bands>900 100</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>401 344 102 99 54</canonical_bands>
                <polymorphic_bands>446 401 99 54</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGTTAAAAGGGGGTATAGGTT</pcr_primer_p1>
		<pcr_primer_p2>GCGCAAGTCATTAAGATACTACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGC</canonical_amplicon>
		<polymorphic_amplicon>CTAGTTAAAAGGGGGTATAGGTTGTTATTCTACATATTTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATKCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29056</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>200868</contig_pos>
        <strand></strand>
        <context>aaaaatatca[G/A]aaagttgtca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAGAAGAGGTAGGAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCA</left_flank>
        <right_flank>AAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGAATTTTGTT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGCAAATAGCTTCATATATACCTAGTTCCTGAAACAGGAAAATTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGTCGCCACACCCCCATTTTGTTACATCATCCACACAATCAAACAATATGTTCCTTAAATTCGTTTGTTACAGATAATCAGTCGAGTGGATGTTCCAAACATTGGAGACGAAGTTCATCATACTGGCTGGAACGCTTGCTCATCCTGTCATGATAAACCGACTGAGAAGAGGTAGGAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCAGAAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGAATTTTGTTAGTTGATAATTTTTGATAACTAGTGCAGAAAGCATGATAACTTGGGTCAAAGTAGACGCTCCTTGTGGGGGAGGGTCCTTCTGCTTACCTTCTAGCTTCAACTAAATTTATCTCGGTTCTTGTGAAAGATATCAAAAAATGGTTAACTGATAAAACATTTTTCGATAACATGTTAAACATTTTGTCAGTTGGTTATTTTTTGATATCTTTTATAGGAAATGAGATAACATGGCTCGAAAATGGGTCTTAAGAAATACGGTTGGATGACCGAATTGATATTTTCTGAAATTTTTTTTCCTGCTTCATATTGAAGACTTCTTTTCAATGTTTATTCGCTTTTCTTGATTTAGCTTGAAAATGTTCAACGCTGAGTTTGCGACCGCGTAGCTGCACGGCGCTTTTTGAGTTCAATTTCTTAATTGAAACATGAGACTTAAAAAATTTCGGTTT</canonical>
            <polymorphic>TTCACAACTAATGTCTTTTAGAAGTGTTCAGGGTGTTATATCATTTTGTAGAAATTTTCAAGATCTACATTTTGCAATTTGAATTTTTGGAAAATGTCAAGTTTGAAGCAAGTTATGCTTCAAAGAATCCATCAGCCGCCAATCGCCCCGTTCTTGATAACTTTTTCAAACTAATTTTTTACAGTTGTATAGTAGTATCTTAATGACTTGCGCAAATAGCTTCATATATACCTAGTTCCTGAAACAGGAAAATTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGTCGCCACACCCCCATTTTGTTACATCATCCACACAATCAAACAATATGTTCCTTAAATTCGTTTGTTACAGATAATCAGTCGAGTGGATGTTCCAAACATTGGAGACGAAGTTCATCATACTGGCTGGAACGCTTGCTCATCCTGTCATGATAAACCGACTGAGAAGAGGTAGGAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCARAAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGAATTTTGTTAGTTGATAATTTTTGATAACTAGTGCAGAAAGCATGATAACTTGGGTCAAAGTAGACGCTCCTTGTGGGGGAGGGTCCTTCTGCTTACCTTCTAGCTTCAACTAAATTTATCTCGGTTCTTGTGAAAGATATCAAAAAATGGTTAACTGATAAAACATTTTTCGATAACATGTTAAACATTTTGTCAGTTGGTTATTTTTTGATATCTTTTATAGGAAATGAGATAACATGGCTCGAAAATGGGTCTTAAGAAATACGGTTGGATGACCGAATTGATATTTTCTGAAATTTTTTTTCCTGCTTCATATTGAAGACTTCTTTTCAATGTTTATTCGCTTTTCTTGATTTAGCTTGAAAATGTTCAACGCTGAGTTTGCGACCGCGTAGCTGCACGGCGCTTTTTGAGTTCAATTTCTTAATTGAAACATGAGACTTAAAAAATTTCGGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>499 335 166</canonical_bands>
                <polymorphic_bands>834 166</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAACCGACTGAGAAGAGGTAG</pcr_primer_p1>
		<pcr_primer_p2>GTCATCCAACCGTATTTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>380</pcr_amplicon_size>
		<canonical_amplicon>ATAAACCGACTGAGAAGAGGTAGGAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCAGAAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGAATTTTGTTAGTTGATAATTTTTGATAACTAGTGCAGAAAGCATGATAACTTGGGTCAAAGTAGACGCTCCTTGTGGGGGAGGGTCCTTCTGCTTACCTTCTAGCTTCAACTAAATTTATCTCGGTTCTTGTGAAAGATATCAAAAAATGGTTAACTGATAAAACATTTTTCGATAACATGTTAAACATTTTGTCAGTTGGTTATTTTTTGATATCTTTTATAGGAAATGAGATAACATGGCTCGAAAATGGGTCTTAAGAAATACGGTTGGATGAC</canonical_amplicon>
		<polymorphic_amplicon>ATAAACCGACTGAGAAGAGGTAGGAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCARAAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGAATTTTGTTAGTTGATAATTTTTGATAACTAGTGCAGAAAGCATGATAACTTGGGTCAAAGTAGACGCTCCTTGTGGGGGAGGGTCCTTCTGCTTACCTTCTAGCTTCAACTAAATTTATCTCGGTTCTTGTGAAAGATATCAAAAAATGGTTAACTGATAAAACATTTTTCGATAACATGTTAAACATTTTGTCAGTTGGTTATTTTTTGATATCTTTTATAGGAAATGAGATAACATGGCTCGAAAATGGGTCTTAAGAAATACGGTTGGATGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29057</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>201096</contig_pos>
        <strand></strand>
        <context>acatgttaaa[C/A]attttgtcag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GATATCAAAAAATGGTTAACTGATAAAACATTTTTCGATAACATGTTAAA</left_flank>
        <right_flank>ATTTTGTCAGTTGGTTATTTTTTGATATCTTTTATAGGAAATGAGATAAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACCTAGTTCCTGAAACAGGAAAATTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGTCGCCACACCCCCATTTTGTTACATCATCCACACAATCAAACAATATGTTCCTTAAATTCGTTTGTTACAGATAATCAGTCGAGTGGATGTTCCAAACATTGGAGACGAAGTTCATCATACTGGCTGGAACGCTTGCTCATCCTGTCATGATAAACCGACTGAGAAGAGGTAGGAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCAGAAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGAATTTTGTTAGTTGATAATTTTTGATAACTAGTGCAGAAAGCATGATAACTTGGGTCAAAGTAGACGCTCCTTGTGGGGGAGGGTCCTTCTGCTTACCTTCTAGCTTCAACTAAATTTATCTCGGTTCTTGTGAAAGATATCAAAAAATGGTTAACTGATAAAACATTTTTCGATAACATGTTAAACATTTTGTCAGTTGGTTATTTTTTGATATCTTTTATAGGAAATGAGATAACATGGCTCGAAAATGGGTCTTAAGAAATACGGTTGGATGACCGAATTGATATTTTCTGAAATTTTTTTTCCTGCTTCATATTGAAGACTTCTTTTCAATGTTTATTCGCTTTTCTTGATTTAGCTTGAAAATGTTCAACGCTGAGTTTGCGACCGCGTAGCTGCACGGCGCTTTTTGAGTTCAATTTCTTAATTGAAACATGAGACTTAAAAAATTTCGGTTTCATAAATCCTAGGAGTTGGGACCATACCTTCCTCTTACATTAGGATTATTGTTGTCAAATATTCTAATAGAAGGATCTCCTTAACTCTCAGTTAAAGGCTACAGTCAACTTACTGCGTAGCTTGTACCACGGCACTCTTAGAAGTTCAAATTCAACCTCTTACAACTTGGTAGCTTATCATGAGAATAAAAAAAAATCCACGGTTTCACGGATTCTATGAGTTTGAAA</canonical>
            <polymorphic>TACCTAGTTCCTGAAACAGGAAAATTTTGGTTCAAAGCGACCACAAAATTTTTTTCACTGTCGCCACACCCCCATTTTGTTACATCATCCACACAATCAAACAATATGTTCCTTAAATTCGTTTGTTACAGATAATCAGTCGAGTGGATGTTCCAAACATTGGAGACGAAGTTCATCATACTGGCTGGAACGCTTGCTCATCCTGTCATGATAAACCGACTGAGAAGAGGTAGGAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCAGAAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGAATTTTGTTAGTTGATAATTTTTGATAACTAGTGCAGAAAGCATGATAACTTGGGTCAAAGTAGACGCTCCTTGTGGGGGAGGGTCCTTCTGCTTACCTTCTAGCTTCAACTAAATTTATCTCGGTTCTTGTGAAAGATATCAAAAAATGGTTAACTGATAAAACATTTTTCGATAACATGTTAAAMATTTTGTCAGTTGGTTATTTTTTGATATCTTTTATAGGAAATGAGATAACATGGCTCGAAAATGGGTCTTAAGAAATACGGTTGGATGACCGAATTGATATTTTCTGAAATTTTTTTTCCTGCTTCATATTGAAGACTTCTTTTCAATGTTTATTCGCTTTTCTTGATTTAGCTTGAAAATGTTCAACGCTGAGTTTGCGACCGCGTAGCTGCACGGCGCTTTTTGAGTTCAATTTCTTAATTGAAACATGAGACTTAAAAAATTTCGGTTTCATAAATCCTAGGAGTTGGGACCATACCTTCCTCTTACATTAGGATTATTGTTGTCAAATATTCTAATAGAAGGATCTCCTTAACTCTCAGTTAAAGGCTACAGTCAACTTACTGCGTAGCTTGTACCACGGCACTCTTAGAAGTTCAAATTCAACCTCTTACAACTTGGTAGCTTATCATGAGAATAAAAAAAAATCCACGGTTTCACGGATTCTATGAGTTTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATAATCCTGTGATGTTGTCA</pcr_primer_p1>
		<pcr_primer_p2>GTCATCCAACCGTATTTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>357</pcr_amplicon_size>
		<canonical_amplicon>GAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCAGAAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGAATTTTGTTAGTTGATAATTTTTGATAACTAGTGCAGAAAGCATGATAACTTGGGTCAAAGTAGACGCTCCTTGTGGGGGAGGGTCCTTCTGCTTACCTTCTAGCTTCAACTAAATTTATCTCGGTTCTTGTGAAAGATATCAAAAAATGGTTAACTGATAAAACATTTTTCGATAACATGTTAAACATTTTGTCAGTTGGTTATTTTTTGATATCTTTTATAGGAAATGAGATAACATGGCTCGAAAATGGGTCTTAAGAAATACGGTTGGATGAC</canonical_amplicon>
		<polymorphic_amplicon>GAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCAGAAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGAATTTTGTTAGTTGATAATTTTTGATAACTAGTGCAGAAAGCATGATAACTTGGGTCAAAGTAGACGCTCCTTGTGGGGGAGGGTCCTTCTGCTTACCTTCTAGCTTCAACTAAATTTATCTCGGTTCTTGTGAAAGATATCAAAAAATGGTTAACTGATAAAACATTTTTCGATAACATGTTAAAMATTTTGTCAGTTGGTTATTTTTTGATATCTTTTATAGGAAATGAGATAACATGGCTCGAAAATGGGTCTTAAGAAATACGGTTGGATGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29058</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>201207</contig_pos>
        <strand>+</strand>
        <context>TTTTCTGAAA[C/T]TTTTTTTCYT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGGGTCTTAAGAAATACGGTTGGATGACCGAATTGATATTTTCTGAAA</left_flank>
        <right_flank>TTTTTTTCCTGCTTCATATTGAAGACTTCTTTTCAATGTTTATTCGCTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTAAATTCGTTTGTTACAGATAATCAGTCGAGTGGATGTTCCAAACATTGGAGACGAAGTTCATCATACTGGCTGGAACGCTTGCTCATCCTGTCATGATAAACCGACTGAGAAGAGGTAGGAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCAGAAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGAATTTTGTTAGTTGATAATTTTTGATAACTAGTGCAGAAAGCATGATAACTTGGGTCAAAGTAGACGCTCCTTGTGGGGGAGGGTCCTTCTGCTTACCTTCTAGCTTCAACTAAATTTATCTCGGTTCTTGTGAAAGATATCAAAAAATGGTTAACTGATAAAACATTTTTCGATAACATGTTAAACATTTTGTCAGTTGGTTATTTTTTGATATCTTTTATAGGAAATGAGATAACATGGCTCGAAAATGGGTCTTAAGAAATACGGTTGGATGACCGAATTGATATTTTCTGAAATTTTTTTTCCTGCTTCATATTGAAGACTTCTTTTCAATGTTTATTCGCTTTTCTTGATTTAGCTTGAAAATGTTCAACGCTGAGTTTGCGACCGCGTAGCTGCACGGCGCTTTTTGAGTTCAATTTCTTAATTGAAACATGAGACTTAAAAAATTTCGGTTTCATAAATCCTAGGAGTTGGGACCATACCTTCCTCTTACATTAGGATTATTGTTGTCAAATATTCTAATAGAAGGATCTCCTTAACTCTCAGTTAAAGGCTACAGTCAACTTACTGCGTAGCTTGTACCACGGCACTCTTAGAAGTTCAAATTCAACCTCTTACAACTTGGTAGCTTATCATGAGAATAAAAAAAAATCCACGGTTTCACGGATTCTATGAGTTTGAAAAAATCTACCTCTGAGATCATGCAGCGCTTATCTTTCCAACCGTAAACACTCCAATAGAAGGATCTATCTAACTCTTAACTTTGAGTCAATTCATTTCGGCTCTTGTAAAAG</canonical>
            <polymorphic>CTTAAATTCGTTTGTTACAGATAATCAGTCGAGTGGATGTTCCAAACATTGGAGACGAAGTTCATCATACTGGCTGGAACGCTTGCTCATCCTGTCATGATAAACCGACTGAGAAGAGGTAGGAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCAGAAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGAATTTTGTTAGTTGATAATTTTTGATAACTAGTGCAGAAAGCATGATAACTTGGGTCAAAGTAGACGCTCCTTGTGGGGGAGGGTCCTTCTGCTTACCTTCTAGCTTCAACTAAATTTATCTCGGTTCTTGTGAAAGATATCAAAAAATGGTTAACTGATAAAACATTTTTCGATAACATGTTAAACATTTTGTCAGTTGGTTATTTTTTGATATCTTTTATAGGAAATGAGATAACATGGCTCGAAAATGGGTCTTAAGAAATACGGTTGGATGACCGAATTGATATTTTCTGAAAYTTTTTTTCCTGCTTCATATTGAAGACTTCTTTTCAATGTTTATTCGCTTTTCTTGATTTAGCTTGAAAATGTTCAACGCTGAGTTTGCGACCGCGTAGCTGCACGGCGCTTTTTGAGTTCAATTTCTTAATTGAAACATGAGACTTAAAAAATTTCGGTTTCATAAATCCTAGGAGTTGGGACCATACCTTCCTCTTACATTAGGATTATTGTTGTCAAATATTCTAATAGAAGGATCTCCTTAACTCTCAGTTAAAGGCTACAGTCAACTTACTGCGTAGCTTGTACCACGGCACTCTTAGAAGTTCAAATTCAACCTCTTACAACTTGGTAGCTTATCATGAGAATAAAAAAAAATCCACGGTTTCACGGATTCTATGAGTTTGAAAAAATCTACCTCTGAGATCATGCAGCGCTTATCTTTCCAACCGTAAACACTCCAATAGAAGGATCTATCTAACTCTTAACTTTGAGTCAATTCATTTCGGCTCTTGTAAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>198 191 182 159 153 113 4</canonical_bands>
                <polymorphic_bands>335 198 191 159 113 4</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>198 167 166 159 123 97 24 22 16 16 8 4</canonical_bands>
                <polymorphic_bands>198 167 166 159 139 97 24 22 16 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATAATCCTGTGATGTTGTCA</pcr_primer_p1>
		<pcr_primer_p2>AGAAAAGCGAATAAACATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>431</pcr_amplicon_size>
		<canonical_amplicon>GAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCAGAAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGAATTTTGTTAGTTGATAATTTTTGATAACTAGTGCAGAAAGCATGATAACTTGGGTCAAAGTAGACGCTCCTTGTGGGGGAGGGTCCTTCTGCTTACCTTCTAGCTTCAACTAAATTTATCTCGGTTCTTGTGAAAGATATCAAAAAATGGTTAACTGATAAAACATTTTTCGATAACATGTTAAACATTTTGTCAGTTGGTTATTTTTTGATATCTTTTATAGGAAATGAGATAACATGGCTCGAAAATGGGTCTTAAGAAATACGGTTGGATGACCGAATTGATATTTTCTGAAATTTTTTTTCCTGCTTCATATTGAAGACTTCTTTTCAATGTTTATTCGCTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>GAATAATCCTGTGATGTTGTCAACTTTCAAAAATATCAGAAAGTTGTCAACTAACAAACTGTTTCTTTTAATATTATGAGAATTTTGTTAGTTGATAATTTTTGATAACTAGTGCAGAAAGCATGATAACTTGGGTCAAAGTAGACGCTCCTTGTGGGGGAGGGTCCTTCTGCTTACCTTCTAGCTTCAACTAAATTTATCTCGGTTCTTGTGAAAGATATCAAAAAATGGTTAACTGATAAAACATTTTTCGATAACATGTTAAACATTTTGTCAGTTGGTTATTTTTTGATATCTTTTATAGGAAATGAGATAACATGGCTCGAAAATGGGTCTTAAGAAATACGGTTGGATGACCGAATTGATATTTTCTGAAAYTTTTTTTCCTGCTTCATATTGAAGACTTCTTTTCAATGTTTATTCGCTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29059</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>201556</contig_pos>
        <strand>+</strand>
        <context>TCATGAGAAT[A/G]AAAAAAAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAGAAGTTCAAATTCAACCTCTTACAACTTGGTAGCTTATCATGAGAAT</left_flank>
        <right_flank>AAAAAAAATCCACGGTTTCACGGATTCTATGAGTTTGAAAAAATCTACCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGTTAACTGATAAAACATTTTTCGATAACATGTTAAACATTTTGTCAGTTGGTTATTTTTTGATATCTTTTATAGGAAATGAGATAACATGGCTCGAAAATGGGTCTTAAGAAATACGGTTGGATGACCGAATTGATATTTTCTGAAATTTTTTTTCCTGCTTCATATTGAAGACTTCTTTTCAATGTTTATTCGCTTTTCTTGATTTAGCTTGAAAATGTTCAACGCTGAGTTTGCGACCGCGTAGCTGCACGGCGCTTTTTGAGTTCAATTTCTTAATTGAAACATGAGACTTAAAAAATTTCGGTTTCATAAATCCTAGGAGTTGGGACCATACCTTCCTCTTACATTAGGATTATTGTTGTCAAATATTCTAATAGAAGGATCTCCTTAACTCTCAGTTAAAGGCTACAGTCAACTTACTGCGTAGCTTGTACCACGGCACTCTTAGAAGTTCAAATTCAACCTCTTACAACTTGGTAGCTTATCATGAGAATAAAAAAAAATCCACGGTTTCACGGATTCTATGAGTTTGAAAAAATCTACCTCTGAGATCATGCAGCGCTTATCTTTCCAACCGTAAACACTCCAATAGAAGGATCTATCTAACTCTTAACTTTGAGTCAATTCATTTCGGCTCTTGTAAAAGATGTCAAAAAGTTGCCAACTGATAAGTTGTTTATCATAATATCAGCATTATTTTATCCGTTTATCGTTTTCAAATTTTTTTAACAGGAAATGAGATAAATTGGCTCAAAGGTGACAGTGTGCTAGTACGAGTCACAGTGTATGTAGGGTACAGCCAAATTCGCAACCGCGTAGCACCCGGTATAAAGGCTCAACTTTGCAACTGCGTAGCTGTACCACAGCACTCTTAGAAGTTCAAATTCAACTTCTTCCAATTAGGTAGCCTATCATGAGAATTTAAAAAAAAATCTACGGTTTTATAAATCCTATGAGTTTGGACAATATCTGCTCAGGCAATACATCTCCGATGA</canonical>
            <polymorphic>ATGGTTAACTGATAAAACATTTTTCGATAACATGTTAAACATTTTGTCAGTTGGTTATTTTTTGATATCTTTTATAGGAAATGAGATAACATGGCTCGAAAATGGGTCTTAAGAAATACGGTTGGATGACCGAATTGATATTTTCTGAAATTTTTTTTCCTGCTTCATATTGAAGACTTCTTTTCAATGTTTATTCGCTTTTCTTGATTTAGCTTGAAAATGTTCAACGCTGAGTTTGCGACCGCGTAGCTGCACGGCGCTTTTTGAGTTCAATTTCTTAATTGAAACATGAGACTTAAAAAATTTCGGTTTCATAAATCCTAGGAGTTGGGACCATACCTTCCTCTTACATTAGGATTATTGTTGTCAAATATTCTAATAGAAGGATCTCCTTAACTCTCAGTTAAAGGCTACAGTCAACTTACTGCGTAGCTTGTACCACGGCACTCTTAGAAGTTCAAATTCAACCTCTTACAACTTGGTAGCTTATCATGAGAATRAAAAAAAATCCACGGTTTCACGGATTCTATGAGTTTGAAAAAATCTACCTCTGAGATCATGCAGCGCTTATCTTTCCAACCGTAAACACTCCAATAGAAGGATCTATCTAACTCTTAACTTTGAGTCAATTCATTTCGGCTCTTGTAAAAGATGTCAAAAAGTTGCCAACTGATAAGTTGTTTATCATAATATCAGCATTATTTTATCCGTTTATCGTTTTCAAATTTTTTTAACAGGAAATGAGATAAATTGGCTCAAAGGTGACAGTGTGCTAGTACGAGTCACAGTGTATGTAGGGTACAGCCAAATTCGCAACCGCGTAGCACCCGGTATAAAGGCTCAACTTTGCAACTGCGTAGCTGTACCACAGCACTCTTAGAAGTTCAAATTCAACTTCTTCCAATTAGGTAGCCTATCATGAGAATTTAAAAAAAAATCTACGGTTTTATAAATCCTATGAGTTTGGACAATATCTGCTCAGGCAATACATCTCCGATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGGAGTTGGGACCATACCT</pcr_primer_p1>
		<pcr_primer_p2>CATGATCTCAGAGGTAGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TAGGAGTTGGGACCATACCTTCCTCTTACATTAGGATTATTGTTGTCAAATATTCTAATAGAAGGATCTCCTTAACTCTCAGTTAAAGGCTACAGTCAACTTACTGCGTAGCTTGTACCACGGCACTCTTAGAAGTTCAAATTCAACCTCTTACAACTTGGTAGCTTATCATGAGAATAAAAAAAAATCCACGGTTTCACGGATTCTATGAGTTTGAAAAAATCTACCTCTGAGATCATG</canonical_amplicon>
		<polymorphic_amplicon>TAGGAGTTGGGACCATACCTTCCTCTTACATTAGGATTATTGTTGTCAAATATTCTAATAGAAGGATCTCCTTAACTCTCAGTTAAAGGCTACAGTCAACTTACTGCGTAGCTTGTACCACGGCACTCTTAGAAGTTCAAATTCAACCTCTTACAACTTGGTAGCTTATCATGAGAATRAAAAAAAATCCACGGTTTCACGGATTCTATGAGTTTGAAAAAATCTACCTCTGAGATCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29060</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>264598</contig_pos>
        <strand></strand>
        <context>TCGCTGTTAC[G/A]ATATCATGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTTTGAACTTTTGAGAATTAAAAAAAAAACAAACATTTTTCGCTGTTAC</left_flank>
        <right_flank>ATATCATGTTATCTGAAATTTCCGTAGTAATTCCATTATTTCTATGAAAT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTCTTTTTTAAATAACTCAAAATTTCCAAGAATGAATTTTTTTGAAATTTCAAAACACATCTGTTTACTAGATTCAAAGTTTCTCCATTTTATAATCAAGCGAGTTTCATCAAACAGATCTCTAAACTTAACAAAAAATGTTTATGTTTCAGCATCTAGACAAACTGTCACATTTTTTAAAACCCTAATCCAGAGTATTTCTTACCACCCCAAAATGTTGCATTTCTGAGTTTCTATTGATTTGAAATGCCTCCAACAATCTACATTTTCAATTCTAAAAAATGATCAAATTTATTCAGAAATCAGAATTCAGGTTTTTAAATTCAGTTTAGAGAAATATATTACCCTTTTCAGAACCCAACTCTCACCAACCGTTCGACGACATTCATCCAACGTCAAAACGTATGACGCTATTCAGTTTCGCGACAAATTGAGAAGAGGTGAGCAATTTTGAACTTTTGAGAATTAAAAAAAAAACAAACATTTTTCGCTGTTACGATATCATGTTATCTGAAATTTCCGTAGTAATTCCATTATTTCTATGAAATGATTAAAGTTTGAATCATTCCTTTTAATTTTGTTAACATAGAAAGTTAAATTTTCATTAAGTTTCTAGCAAATTAATGTTTCTGCTTCAAAACTTTCATGGATATTGATAAGATTTTCGAAGTAGTTCATAAGTGGATAAATTCATATTTATAGGAGATTCGGACTTTTGATACTCCTCTTATGTGGGCTACGCGGTTGACAGTTAAATTGAAAAATATTTTTTCCAGGCGTCTCCCTAGAAAACCTTGGTCCTCATCGTGTCTGCTTCTATCCCCATCCAGCACCTTCGACTCGAAATCCACCAATTAATCGACCTGTTTTGTTTTCCAAGGTTTGTTTTATGAATACTAGAATTTCCTAGATTTTCCGAAAACTGTGAAACCGGAAAATTTCAAAATGCCCAATTGTTTACCATTTCAAATATGTTTCGAAAACACCGAATTATAATT</canonical>
            <polymorphic>CTTTCTTTTTTAAATAACTCAAAATTTCCAAGAATGAATTTTTTTGAAATTTCAAAACACATCTGTTTACTAGATTCAAAGTTTCTCCATTTTATAATCAAGCGAGTTTCATCAAACAGATCTCTAAACTTAACAAAAAATGTTTATGTTTCAGCATCTAGACAAACTGTCACATTTTTTAAAACCCTAATCCAGAGTATTTCTTACCACCCCAAAATGTTGCATTTCTGAGTTTCTATTGATTTGAAATGCCTCCAACAATCTACATTTTCAATTCTAAAAAATGATCAAATTTATTCAGAAATCAGAATTCAGGTTTTTAAATTCAGTTTAGAGAAATATATTACCCTTTTCAGAACCCAACTCTCACCAACCGTTCGACGACATTCATCCAACGTCAAAACGTATGACGCTATTCAGTTTCGCGACAAATTGAGAAGAGGTGAGCAATTTTGAACTTTTGAGAATTAAAAAAAAAACAAACATTTTTCGCTGTTACRATATCATGTTATCTGAAATTTCCGTAGTAATTCCATTATTTCTATGAAATGATTAAAGTTTGAATCATTCCTTTTAATTTTGTTAACATAGAAAGTTAAATTTTCATTAAGTTTCTAGCAAATTAATGTTTCTGCTTCAAAACTTTCATGGATATTGATAAGATTTTCGAAGTAGTTCATAAGTGGATAAATTCATATTTATAGGAGATTCGGACTTTTGATACTCCTCTTATGTGGGCTACGCGGTTGACAGTTAAATTGAAAAATATTTTTTCCAGGCGTCTCCCTAGAAAACCTTGGTCCTCATCGTGTCTGCTTCTATCCCCATCCAGCACCTTCGACTCGAAATCCACCAATTAATCGACCTGTTTTGTTTTCCAAGGTTTGTTTTATGAATACTAGAATTTCCTAGATTTTCCGAAAACTGTGAAACCGGAAAATTTCAAAATGCCCAATTGTTTACCATTTCAAATATGTTTCGAAAACACCGAATTATAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATATATTACCCTTTTCAGAACC</pcr_primer_p1>
		<pcr_primer_p2>CAAAATTAAAAGGAATGATTCAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAATATATTACCCTTTTCAGAACCCAACTCTCACCAACCGTTCGACGACATTCATCCAACGTCAAAACGTATGACGCTATTCAGTTTCGCGACAAATTGAGAAGAGGTGAGCAATTTTGAACTTTTGAGAATTAAAAAAAAAACAAACATTTTTCGCTGTTACGATATCATGTTATCTGAAATTTCCGTAGTAATTCCATTATTTCTATGAAATGATTAAAGTTTGAATCATTCCTTTTAATTTTG</canonical_amplicon>
		<polymorphic_amplicon>GAAATATATTACCCTTTTCAGAACCCAACTCTCACCAACCGTTCGACGACATTCATCCAACGTCAAAACGTATGACGCTATTCAGTTTCGCGACAAATTGAGAAGAGGTGAGCAATTTTGAACTTTTGAGAATTAAAAAAAAAACAAACATTTTTCGCTGTTACRATATCATGTTATCTGAAATTTCCGTAGTAATTCCATTATTTCTATGAAATGATTAAAGTTTGAATCATTCCTTTTAATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29061</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>270104</contig_pos>
        <strand></strand>
        <context>ttttgtttag[T/A]atactctgaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTGTACATAACAGTGATCAACTACAAAATTAAAGCCCTATTTTTGTTTAG</left_flank>
        <right_flank>ATACTCTGAAATTTTCAGACAAATCGAAAAATTCTGGAATCCTTTTTTTA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGGAGGAGCGGCTACAGTAGGACGAGTCGGTAATAACCATCATATTGTTCATGGAGGAAGGTGGGTGGTGGTTTTTGAAACGATGAGTCATGTTTTCCTGTTATCAGTTGACTTTTTAGGTGGGAAGGTTAATGTCTCATCGTTTTGTTAGAAAATTGTTTATGGGGTTTTGAAATTGTTATGAAATGGGTAACAAACTTGGGGAAGGTTCGGGAACCTTTGAAAGGATGCGAAAGGAAGATATCTTTTTTTTGGTTAAAAACGGCTACAAAAGATAGTAGATTTTGTTAGATGAACTGGAAAACTTGTACGTATACTAAAAAAAATATAGCTTCAATTTTGTAGTTGACAACTTTTATATAAAAATTCATCCGAATGAGATATACAGTATGAAAGTGTCACTTTATGCTATTTCCTGGAGAAGCGGTATATCTCATTTGCACTTGTTTGTACATAACAGTGATCAACTACAAAATTAAAGCCCTATTTTTGTTTAGTATACTCTGAAATTTTCAGACAAATCGAAAAATTCTGGAATCCTTTTTTTAGTATTCCAAAATTGACAAATTTAAGAAATAAGGAAAATTTCTACTGTTTCACTATCTGTTCAAAACGTCGGGTACTTTCTTTTGGTGCTCCTATCGCCATTAGCAAATTTCTCAAACCTTTTATTAGGGTCTTAAAATTATAATTGGAGAATATTAAGAACTTGAAACTGAAAATATATATTTCATTTTCATCAAACTTGTATTAGCTCATAATTAAAAATTAAAGTATTACGTTCCAAATATTCTCAAGACAACAAACATAGTGCAACTACAAAAATGTTCTAGTAGTTATCCTATTCAACTGGATTTTTAAACACCCTAGGTTTTCGGAGTAAGAATTATGTCAAAAGTTCGAACTTTGACAAAATTTACAAAGTTTCCCTGTAACAAAAAAATTGCCAAGAGCTCAGGCGGTATGAAATATTAGGTTGGCGGGAAAGTCTTTGTCAC</canonical>
            <polymorphic>GGAGGAGGAGCGGCTACAGTAGGACGAGTCGGTAATAACCATCATATTGTTCATGGAGGAAGGTGGGTGGTGGTTTTTGAAACGATGAGTCATGTTTTCCTGTTATCAGTTGACTTTTTAGGTGGGAAGGTTAATGTCTCATCGTTTTGTTAGAAAATTGTTTATGGGGTTTTGAAATTGTTATGAAATGGGTAACAAACTTGGGGAAGGTTCGGGAACCTTTGAAAGGATGCGAAAGGAAGATATCTTTTTTTTGGTTAAAAACGGCTACAAAAGATAGTAGATTTTGTTAGATGAACTGGAAAACTTGTACGTATACTAAAAAAAATATAGCTTCAATTTTGTAGTTGACAACTTTTATATAAAAATTCATCCGAATGAGATATACAGTATGAAAGTGTCACTTTATGCTATTTCCTGGAGAAGCGGTATATCTCATTTGCACTTGTTTGTACATAACAGTGATCAACTACAAAATTAAAGCCCTATTTTTGTTTAGWATACTCTGAAATTTTCAGACAAATCGAAAAATTCTGGAATCCTTTTTTTAGTATTCCAAAATTGACAAATTTAAGAAATAAGGAAAATTTCTACTGTTTCACTATCTGTTCAAAACGTCGGGTACTTTCTTTTGGTGCTCCTATCGCCATTAGCAAATTTCTCAAACCTTTTATTAGGGTCTTAAAATTATAATTGGAGAATATTAAGAACTTGAAACTGAAAATATATATTTCATTTTCATCAAACTTGTATTAGCTCATAATTAAAAATTAAAGTATTACGTTCCAAATATTCTCAAGACAACAAACATAGTGCAACTACAAAAATGTTCTAGTAGTTATCCTATTCAACTGGATTTTTAAACACCCTAGGTTTTCGGAGTAAGAATTATGTCAAAAGTTCGAACTTTGACAAAATTTACAAAGTTTCCCTGTAACAAAAAAATTGCCAAGAGCTCAGGCGGTATGAAATATTAGGTTGGCGGGAAAGTCTTTGTCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 315 185</canonical_bands>
                <polymorphic_bands>685 315</polymorphic_bands>
            </assay>
            <assay>
                <site>GTATAC</site>
                <isoschizomers>
                    <enzyme>BssNAI</enzyme>
                    <enzyme>Bst1107I</enzyme>
                    <enzyme>BstZ17I</enzyme>
                </isoschizomers>
                <canonical_bands>499 316 185</canonical_bands>
                <polymorphic_bands>684 316</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 205 152 111 33</canonical_bands>
                <polymorphic_bands>651 205 111 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAACAAACTTGGGGAAGGT</pcr_primer_p1>
		<pcr_primer_p2>ACGTTTTGAACAGATAGTGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>427</pcr_amplicon_size>
		<canonical_amplicon>GTAACAAACTTGGGGAAGGTTCGGGAACCTTTGAAAGGATGCGAAAGGAAGATATCTTTTTTTTGGTTAAAAACGGCTACAAAAGATAGTAGATTTTGTTAGATGAACTGGAAAACTTGTACGTATACTAAAAAAAATATAGCTTCAATTTTGTAGTTGACAACTTTTATATAAAAATTCATCCGAATGAGATATACAGTATGAAAGTGTCACTTTATGCTATTTCCTGGAGAAGCGGTATATCTCATTTGCACTTGTTTGTACATAACAGTGATCAACTACAAAATTAAAGCCCTATTTTTGTTTAGTATACTCTGAAATTTTCAGACAAATCGAAAAATTCTGGAATCCTTTTTTTAGTATTCCAAAATTGACAAATTTAAGAAATAAGGAAAATTTCTACTGTTTCACTATCTGTTCAAAACGT</canonical_amplicon>
		<polymorphic_amplicon>GTAACAAACTTGGGGAAGGTTCGGGAACCTTTGAAAGGATGCGAAAGGAAGATATCTTTTTTTTGGTTAAAAACGGCTACAAAAGATAGTAGATTTTGTTAGATGAACTGGAAAACTTGTACGTATACTAAAAAAAATATAGCTTCAATTTTGTAGTTGACAACTTTTATATAAAAATTCATCCGAATGAGATATACAGTATGAAAGTGTCACTTTATGCTATTTCCTGGAGAAGCGGTATATCTCATTTGCACTTGTTTGTACATAACAGTGATCAACTACAAAATTAAAGCCCTATTTTTGTTTAGWATACTCTGAAATTTTCAGACAAATCGAAAAATTCTGGAATCCTTTTTTTAGTATTCCAAAATTGACAAATTTAAGAAATAAGGAAAATTTCTACTGTTTCACTATCTGTTCAAAACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29062</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>273339</contig_pos>
        <strand>+</strand>
        <context>GATTTGAAMT[A/C]TTCGGTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACAACTTTTGGAGTGTAGATAAACTATCGAAACATGTAACGATTTGAAAT</left_flank>
        <right_flank>TTCGGTTTTTGAAAAATTCCCTTTGTTTTGAACTTTGAGTGAAAACCATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGATGATGCATAATGGTAAATAGAGAGAAAAAGATGGGAGAACATGGGAAAGGAAGATACATTTATTTGAATTACAATGTGTTCTTCTTTTAAGAGGAGCTTGATGAAAGTAGCTTGTGATAAGAACCAGTTTTTTTATTTCAAAATTTTCAATTAGCCTTCCTTAACTAGCTCAGATTTTAGGTTAGTTTTGAAGCAGTAATATTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAATTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATCACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGTGTAGATAAACTATCGAAACATGTAACGATTTGAAATTTTCGGTTTTTGAAAAATTCCCTTTGTTTTGAACTTTGAGTGAAAACCATTGTTGTAATTTTAGAGTTTTTTCTGATGGATTAAACCTATTTTCGTTTTCAAAATAATTTCGAATTTCTGTCAAAAATTGTGTTAATCAATGATAGTGTGTTTCACAGAAAAATTCTCACTATCAGATTCAAATATTTAGATTTTTCAAATGAAATTAAAAGTTATTATAGATTTATTGATGGTTTTGGTTTAGAGCAATAAATTCTGAACATTTGATATTTTAATCTGTTTCAAATCTTCTGTAACTTTTGAAAGTTTAAAACGTATTTATTCTGACTTCCATTGGTTGACGTGGTCGCTGGAGATGGGACGAGCTGTCCGAAGACTGATATCAAGGAGCATTCTTTCTGAGTCTTTCATGTCCTGCCCTCTATTGTTTCATTACCTGGTCAATAAATTAATTCAAAGGAGGCGATTTGTTGAGTGAGATCAGCCATTGCCTTTGCCTGA</canonical>
            <polymorphic>ATGGATGATGCATAATGGTAAATAGAGAGAAAAAGATGGGAGAACATGGGAAAGGAAGATACATTTATTTGAATTACAATGTGTTCTTCTTTTAAGAGGAGCTTGATGAAAGTAGCTTGTGATAAGAACCAGTTTTTTTATTTCAAAATTTTCAATTAGCCTTCCTTAACTAGCTCAGATTTTAGGTTAGTTTTGAAGCAGTAATATTAGCTTCCCTAATAAAGTAGTTACCTAACTTTGGCCCAATTTTGCATGCTCTCTGTAGCAGATATCAAAAATTGATCAACTAACAAAATATTTATCATAAAATCAGACACATTTTATTAGGTGACCACTTTTTGATATTTATCACACATAATGAGATAAAATGATTCAAAAAAGGAAACTTAAAACATGATTATTTTTTTAAAGTTTCAAAAAGCTTGTAGATGTTGGTTTTTTTATAAGTTACAACTTTTGGAGTGTAGATAAACTATCGAAACATGTAACGATTTGAAATMTTCGGTTTTTGAAAAATTCCCTTTGTTTTGAACTTTGAGTGAAAACCATTGTTGTAATTTTAGAGTTTTTTCTGATGGATTAAACCTATTTTCGTTTTCAAAATAATTTCGAATTTCTGTCAAAAATTGTGTTAATCAATGATAGTGTGTTTCACAGAAAAATTCTCACTATCAGATTCAAATATTTAGATTTTTCAAATGAAATTAAAAGTTATTATAGATTTATTGATGGTTTTGGTTTAGAGCAATAAATTCTGAACATTTGATATTTTAATCTGTTTCAAATCTTCTGTAACTTTTGAAAGTTTAAAACGTATTTATTCTGACTTCCATTGGTTGACGTGGTCGCTGGAGATGGGACGAGCTGTCCGAAGACTGATATCAAGGAGCATTCTTTCTGAGTCTTTCATGTCCTGCCCTCTATTGTTTCATTACCTGGTCAATAAATTAATTCAAAGGAGGCGATTTGTTGAGTGAGATCAGCCATTGCCTTTGCCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>350 250 146 97 90 49 18</canonical_bands>
                <polymorphic_bands>368 250 146 97 90 49</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>220 195 91 75 71 51 49 48 42 41 36 32 18 13 7 7 4</canonical_bands>
                <polymorphic_bands>238 195 91 75 71 51 49 48 42 41 36 32 13 7 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTATAAGTTACAACTTTTGGAGTG</pcr_primer_p1>
		<pcr_primer_p2>GTGAGAATTTTTCTGTGAAACAC</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>TTTTATAAGTTACAACTTTTGGAGTGTAGATAAACTATCGAAACATGTAACGATTTGAAATTTTCGGTTTTTGAAAAATTCCCTTTGTTTTGAACTTTGAGTGAAAACCATTGTTGTAATTTTAGAGTTTTTTCTGATGGATTAAACCTATTTTCGTTTTCAAAATAATTTCGAATTTCTGTCAAAAATTGTGTTAATCAATGATAGTGTGTTTCACAGAAAAATTCTCAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTATAAGTTACAACTTTTGGAGTGTAGATAAACTATCGAAACATGTAACGATTTGAAATMTTCGGTTTTTGAAAAATTCCCTTTGTTTTGAACTTTGAGTGAAAACCATTGTTGTAATTTTAGAGTTTTTTCTGATGGATTAAACCTATTTTCGTTTTCAAAATAATTTCGAATTTCTGTCAAAAATTGTGTTAATCAATGATAGTGTGTTTCACAGAAAAATTCTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29063</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>308399</contig_pos>
        <strand></strand>
        <context>aagtttgatc[A/C]tcagccacat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAAGGAGTTGCAACGCGTGATTTTTTCGTGCAATGTTTGAAAGTTTGATC</left_flank>
        <right_flank>TCAGCCACATAATTCAGCAGCGAATTTCTTCTAAAATCTCACGTTTACTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCTGTTTCAAAATTATGATAAGTTTATAAATTTTAGTTTTTTCTAATAATCCAGTTTCTTTTGATGTATCTGATAAGCAATGACTGAAAAAAATATGTCTACTCATTATTTGTTGACATAAACCGAGAAAAAACATTTTTTATCAGTTTCAGAATTTTCACAAAAAAATCGTATATTTATTTTCAGAAAGTTAGTGACACTTAATTTCCGGAAAACAACGAAATTAGCTTTGTTATTTTCTGAAGAATCGTTTAATAAGTGTATAGTTTTTGCAAAAAAAAAACGTTGTGACAAAAACTTTTTTTGAGTTTTCGTTTTGTTATGGAAATTTTGAAAGAAAGTGTCTTTAAATTTTTGTTTACTAAACGTATTCACTTGGGTTCTTTTGGGCCAGAAGAAATTTAATAATTTCCAAGTTGACATGGATTTTACCTAATTAGTTTTTATCAAGGAGTTGCAACGCGTGATTTTTTCGTGCAATGTTTGAAAGTTTGATCATCAGCCACATAATTCAGCAGCGAATTTCTTCTAAAATCTCACGTTTACTGGGGCGCGATTTCTGACCCATTGGCTTGAACCCAAGTGCGCGTATTTTTAAATTTTTTTCTCAAAATTTCTAAAATTCCAACTTTTTCCTTCAATTTTTTAGTCCTAATTTCCCCCTAACCCAAACCCAAAACATCTGCCCTCTCCCCAAGTACACAATACACACACCACGACGCAAAAATGCACACAATTTTTTACGTCCTTCATCCAGAATTTATTATTACTTCTCCTTTTTCCCCCTTATATCCCTTTTTTCTGCTTCTCCCTTCCCGACCCCATCTAATTCCCTCAATTTCATCTCTCTTGCGTGTGTGTAGTCGTTGAGTAGCTGCAGCCGCACACAGGATGACGTGTGCAAGGGGGTGTCCAATGGGGCGCACTTGCTGACTTCCTGTGCCTCTCTTCGCAGGAAGCTGCGGCGGAGAGACCCCGACGCCTTCTATTTTTATCGA</canonical>
            <polymorphic>TTCCTGTTTCAAAATTATGATAAGTTTATAAATTTTAGTTTTTTCTAATAATCCAGTTTCTTTTGATGTATCTGATAAGCAATGACTGAAAAAAATATGTCTACTCATTATTTGTTGACATAAACCGAGAAAAAACATTTTTTATCAGTTTCAGAATTTTCACAAAAAAATCGTATATTTATTTTCAGAAAGTTAGTGACACTTAATTTCCGGAAAACAACGAAATTAGCTTTGTTATTTTCTGAAGAATCGTTTAATAAGTGTATAGTTTTTGCAAAAAAAAAACGTTGTGACAAAAACTTTTTTTGAGTTTTCGTTTTGTTATGGAAATTTTGAAAGAAAGTGTCTTTAAATTTTTGTTTACTAAACGTATTCACTTGGGTTCTTTTGGGCCAGAAGAAATTTAATAATTTCCAAGTTGACATGGATTTTACCTAATTAGTTTTTATCAAGGAGTTGCAACGCGTGATTTTTTCGTGCAATGTTTGAAAGTTTGATCMTCAGCCACATAATTCAGCAGCGAATTTCTTCTAAAATCTCACGTTTACTGGGGCGCGATTTCTGACCCATTGGCTTGAACCCAAGTGCGCGTATTTTTAAATTTTTTTCTCAAAATTTCTAAAATTCCAACTTTTTCCTTCAATTTTTTAGTCCTAATTTCCCCCTAACCCAAACCCAAAACATCTGCCCTCTCCCCAAGTACACAATACACACACCACGACGCAAAAATGCACACAATTTTTTACGTCCTTCATCCAGAATTTATTATTACTTCTCCTTTTTCCCCCTTATATCCCTTTTTTCTGCTTCTCCCTTCCCGACCCCATCTAATTCCCTCAATTTCATCTCTCTTGCGTGTGTGTAGTCGTTGAGTAGCTGCAGCCGCACACAGGATGACGTGTGCAAGGGGGTGTCCAATGGGGCGCACTTGCTGACTTCCTGTGCCTCTCTTCGCAGGAAGCTGCGGCGGAGAGACCCCGACGCCTTCTATTTTTATCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAAGTGTCTTTAAATTTTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>AGTTGGAATTTTAGAAATTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>295</pcr_amplicon_size>
		<canonical_amplicon>AGAAAGTGTCTTTAAATTTTTGTTTACTAAACGTATTCACTTGGGTTCTTTTGGGCCAGAAGAAATTTAATAATTTCCAAGTTGACATGGATTTTACCTAATTAGTTTTTATCAAGGAGTTGCAACGCGTGATTTTTTCGTGCAATGTTTGAAAGTTTGATCATCAGCCACATAATTCAGCAGCGAATTTCTTCTAAAATCTCACGTTTACTGGGGCGCGATTTCTGACCCATTGGCTTGAACCCAAGTGCGCGTATTTTTAAATTTTTTTCTCAAAATTTCTAAAATTCCAACT</canonical_amplicon>
		<polymorphic_amplicon>AGAAAGTGTCTTTAAATTTTTGTTTACTAAACGTATTCACTTGGGTTCTTTTGGGCCAGAAGAAATTTAATAATTTCCAAGTTGACATGGATTTTACCTAATTAGTTTTTATCAAGGAGTTGCAACGCGTGATTTTTTCGTGCAATGTTTGAAAGTTTGATCMTCAGCCACATAATTCAGCAGCGAATTTCTTCTAAAATCTCACGTTTACTGGGGCGCGATTTCTGACCCATTGGCTTGAACCCAAGTGCGCGTATTTTTAAATTTTTTTCTCAAAATTTCTAAAATTCCAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29064</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>308594</contig_pos>
        <strand></strand>
        <context>CTGCCCTCTC[C/T]CCAAGTACAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTAGTCCTAATTTCCCCCTAACCCAAACCCAAAACATCTGCCCTCTC</left_flank>
        <right_flank>CCAAGTACACAATACACACACCACGACGCAAAAATGCACACAATTTTTTA</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGACACTTAATTTCCGGAAAACAACGAAATTAGCTTTGTTATTTTCTGAAGAATCGTTTAATAAGTGTATAGTTTTTGCAAAAAAAAAACGTTGTGACAAAAACTTTTTTTGAGTTTTCGTTTTGTTATGGAAATTTTGAAAGAAAGTGTCTTTAAATTTTTGTTTACTAAACGTATTCACTTGGGTTCTTTTGGGCCAGAAGAAATTTAATAATTTCCAAGTTGACATGGATTTTACCTAATTAGTTTTTATCAAGGAGTTGCAACGCGTGATTTTTTCGTGCAATGTTTGAAAGTTTGATCATCAGCCACATAATTCAGCAGCGAATTTCTTCTAAAATCTCACGTTTACTGGGGCGCGATTTCTGACCCATTGGCTTGAACCCAAGTGCGCGTATTTTTAAATTTTTTTCTCAAAATTTCTAAAATTCCAACTTTTTCCTTCAATTTTTTAGTCCTAATTTCCCCCTAACCCAAACCCAAAACATCTGCCCTCTCCCCAAGTACACAATACACACACCACGACGCAAAAATGCACACAATTTTTTACGTCCTTCATCCAGAATTTATTATTACTTCTCCTTTTTCCCCCTTATATCCCTTTTTTCTGCTTCTCCCTTCCCGACCCCATCTAATTCCCTCAATTTCATCTCTCTTGCGTGTGTGTAGTCGTTGAGTAGCTGCAGCCGCACACAGGATGACGTGTGCAAGGGGGTGTCCAATGGGGCGCACTTGCTGACTTCCTGTGCCTCTCTTCGCAGGAAGCTGCGGCGGAGAGACCCCGACGCCTTCTATTTTTATCGATTTTTCTCTTCTTTTTTTCTAAAGAATTTTTGGGAGTTTTAGCTAGGCAAATCAGTAAACGTAACCTCTAATTTTGATCTAAAATCGGTCGCTTACTAATTGTTTGTTTTTAGTTCGTTCTGTTTATTTTCCCTTTAGTTATGAAATTCAATCACCATTTTGTCTAACTAAACCAAACCTAATCTAACCGAACCT</canonical>
            <polymorphic>GTGACACTTAATTTCCGGAAAACAACGAAATTAGCTTTGTTATTTTCTGAAGAATCGTTTAATAAGTGTATAGTTTTTGCAAAAAAAAAACGTTGTGACAAAAACTTTTTTTGAGTTTTCGTTTTGTTATGGAAATTTTGAAAGAAAGTGTCTTTAAATTTTTGTTTACTAAACGTATTCACTTGGGTTCTTTTGGGCCAGAAGAAATTTAATAATTTCCAAGTTGACATGGATTTTACCTAATTAGTTTTTATCAAGGAGTTGCAACGCGTGATTTTTTCGTGCAATGTTTGAAAGTTTGATCATCAGCCACATAATTCAGCAGCGAATTTCTTCTAAAATCTCACGTTTACTGGGGCGCGATTTCTGACCCATTGGCTTGAACCCAAGTGCGCGTATTTTTAAATTTTTTTCTCAAAATTTCTAAAATTCCAACTTTTTCCTTCAATTTTTTAGTCCTAATTTCCCCCTAACCCAAACCCAAAACATCTGCCCTCTCYCCAAGTACACAATACACACACCACGACGCAAAAATGCACACAATTTTTTACGTCCTTCATCCAGAATTTATTATTACTTCTCCTTTTTCCCCCTTATATCCCTTTTTTCTGCTTCTCCCTTCCCGACCCCATCTAATTCCCTCAATTTCATCTCTCTTGCGTGTGTGTAGTCGTTGAGTAGCTGCAGCCGCACACAGGATGACGTGTGCAAGGGGGTGTCCAATGGGGCGCACTTGCTGACTTCCTGTGCCTCTCTTCGCAGGAAGCTGCGGCGGAGAGACCCCGACGCCTTCTATTTTTATCGATTTTTCTCTTCTTTTTTTCTAAAGAATTTTTGGGAGTTTTAGCTAGGCAAATCAGTAAACGTAACCTCTAATTTTGATCTAAAATCGGTCGCTTACTAATTGTTTGTTTTTAGTTCGTTCTGTTTATTTTCCCTTTAGTTATGAAATTCAATCACCATTTTGTCTAACTAAACCAAACCTAATCTAACCGAACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAACTTTTTCCTTCAATTTT</pcr_primer_p1>
		<pcr_primer_p2>GCTACTCAACGACTACACACAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCAACTTTTTCCTTCAATTTTTTAGTCCTAATTTCCCCCTAACCCAAACCCAAAACATCTGCCCTCTCCCCAAGTACACAATACACACACCACGACGCAAAAATGCACACAATTTTTTACGTCCTTCATCCAGAATTTATTATTACTTCTCCTTTTTCCCCCTTATATCCCTTTTTTCTGCTTCTCCCTTCCCGACCCCATCTAATTCCCTCAATTTCATCTCTCTTGCGTGTGTGTAGTCGTTGAGTAGC</canonical_amplicon>
		<polymorphic_amplicon>CCAACTTTTTCCTTCAATTTTTTAGTCCTAATTTCCCCCTAACCCAAACCCAAAACATCTGCCCTCTCYCCAAGTACACAATACACACACCACGACGCAAAAATGCACACAATTTTTTACGTCCTTCATCCAGAATTTATTATTACTTCTCCTTTTTCCCCCTTATATCCCTTTTTTCTGCTTCTCCCTTCCCGACCCCATCTAATTCCCTCAATTTCATCTCTCTTGCGTGTGTGTAGTCGTTGAGTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29065</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>309950</contig_pos>
        <strand></strand>
        <context>GAAATTATGG[T/C]TTTAGACCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGAATCATCTTGGAACTCCACAAAATCAGATAAAAATTCTGAAATTATGG</left_flank>
        <right_flank>TTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGGTCAAAA</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAATTCTTTAAAAAATAATTAGTGGTTATAAATTCATGAATGGTCGTTTTCCGGAAGAAAAAATGTCAAGAATGGTCATTTTTCATTTTTTTTAAAAACCGCAATTATTTTCTCTACATTTTCTATGGATGAATTTTTAATTTGTCTGATAAAACTTTTTTTATAATCAAAAAACAACGCAAAGATGCTATTTTGTGCAATTTCATGAGATTTTTGAATTATAAAAAAAGTTTTANNNNNNNNNNTTAAAAATTCATCCATAGAAAATGTAGAAAAAATAATTGCGGTTTTTTTGAGCTATAGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATGACAATTTTTGACATTTTTTCTTCCGGAAAACGACCATACATGAATCTATAAACACTAATTAATTTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGGTCAAAAATTAATTTGCAGTTCGGAATTGTTCTGAGGGAGAGCGTTTAGGTTAATCAAATCGATTTTGTACAGCGAGTTCCCCTTAAAATGTGCTCCAACGCAAAACGGATTACTGTAGTAATTTTTTTTTTAAATTTCTCGAAAAAAAGTTTTCAAAGCTTTTTTATGCGAATTTTGAATTTTTTCGCCAAAATAGTAGAAAAACTAAATTCAGAATTTCCAATGAGAATTCCTTGCACTTTTCCTCTCCCAGATAATTGCGGATTTCCGCAAAAATCCTTTCTGTTTGCATTTCTCTTCGAAAATTGCTTTTTCTTTAAAGGAAAAATTCTAATTTACGATTTTCCTTTTTAATTTAGAAAATTTCAGCATTTTGCGATTTTTAAGCCTTGAACATCGCTGAAAATACGTTTTTGTGCATTTTTGCGCTGCGGTGAACAAAACTTTTTGCCGCTC</canonical>
            <polymorphic>AATAATTCTTTAAAAAATAATTAGTGGTTATAAATTCATGAATGGTCGTTTTCCGGAAGAAAAAATGTCAAGAATGGTCATTTTTCATTTTTTTTAAAAACCGCAATTATTTTCTCTACATTTTCTATGGATGAATTTTTAATTTGTCTGATAAAACTTTTTTTATAATCAAAAAACAACGCAAAGATGCTATTTTGTGCAATTTCATGAGATTTTTGAATTATAAAAAAAGTTTTANNNNNNNNNNTTAAAAATTCATCCATAGAAAATGTAGAAAAAATAATTGCGGTTTTTTTGAGCTATAGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATGACAATTTTTGACATTTTTTCTTCCGGAAAACGACCATACATGAATCTATAAACACTAATTAATTTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAATTCTGAAATTATGGYTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGGTCAAAAATTAATTTGCAGTTCGGAATTGTTCTGAGGGAGAGCGTTTAGGTTAATCAAATCGATTTTGTACAGCGAGTTCCCCTTAAAATGTGCTCCAACGCAAAACGGATTACTGTAGTAATTTTTTTTTTAAATTTCTCGAAAAAAAGTTTTCAAAGCTTTTTTATGCGAATTTTGAATTTTTTCGCCAAAATAGTAGAAAAACTAAATTCAGAATTTCCAATGAGAATTCCTTGCACTTTTCCTCTCCCAGATAATTGCGGATTTCCGCAAAAATCCTTTCTGTTTGCATTTCTCTTCGAAAATTGCTTTTTCTTTAAAGGAAAAATTCTAATTTACGATTTTCCTTTTTAATTTAGAAAATTTCAGCATTTTGCGATTTTTAAGCCTTGAACATCGCTGAAAATACGTTTTTGTGCATTTTTGCGCTGCGGTGAACAAAACTTTTTGCCGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCCTAGAAATGTCAAAAACTG</pcr_primer_p1>
		<pcr_primer_p2>AATTAATTTTTGACCTACAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATGACAATTTTTGACATTTTTTCTTCCGGAAAACGACCATACATGAATCTATAAACACTAATTAATTTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGGTCAAAAATTAATT</canonical_amplicon>
		<polymorphic_amplicon>ACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATGACAATTTTTGACATTTTTTCTTCCGGAAAACGACCATACATGAATCTATAAACACTAATTAATTTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAATTCTGAAATTATGGYTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGGTCAAAAATTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29066</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>310075</contig_pos>
        <strand></strand>
        <context>AGCGAGTTCC[C/G]CTTAAAATGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTGAGGGAGAGCGTTTAGGTTAATCAAATCGATTTTGTACAGCGAGTTCC</left_flank>
        <right_flank>CTTAAAATGTGCTCCAACGCAAAACGGATTACTGTAGTAATTTTTTTTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGGATGAATTTTTAATTTGTCTGATAAAACTTTTTTTATAATCAAAAAACAACGCAAAGATGCTATTTTGTGCAATTTCATGAGATTTTTGAATTATAAAAAAAGTTTTANNNNNNNNNNTTAAAAATTCATCCATAGAAAATGTAGAAAAAATAATTGCGGTTTTTTTGAGCTATAGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATGACAATTTTTGACATTTTTTCTTCCGGAAAACGACCATACATGAATCTATAAACACTAATTAATTTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGGTCAAAAATTAATTTGCAGTTCGGAATTGTTCTGAGGGAGAGCGTTTAGGTTAATCAAATCGATTTTGTACAGCGAGTTCCCCTTAAAATGTGCTCCAACGCAAAACGGATTACTGTAGTAATTTTTTTTTTAAATTTCTCGAAAAAAAGTTTTCAAAGCTTTTTTATGCGAATTTTGAATTTTTTCGCCAAAATAGTAGAAAAACTAAATTCAGAATTTCCAATGAGAATTCCTTGCACTTTTCCTCTCCCAGATAATTGCGGATTTCCGCAAAAATCCTTTCTGTTTGCATTTCTCTTCGAAAATTGCTTTTTCTTTAAAGGAAAAATTCTAATTTACGATTTTCCTTTTTAATTTAGAAAATTTCAGCATTTTGCGATTTTTAAGCCTTGAACATCGCTGAAAATACGTTTTTGTGCATTTTTGCGCTGCGGTGAACAAAACTTTTTGCCGCTCAGGTTACTGTAGAAAAGGGGATTTTTTGGCGAATTTTCAAGAAAATCATTTTGATTTTTATGATTTCTGTCAGAAATCTAAAAAAGGTTTTTCTTCATATAATTTTTGAATTAAAAAAAAGAAAA</canonical>
            <polymorphic>TATGGATGAATTTTTAATTTGTCTGATAAAACTTTTTTTATAATCAAAAAACAACGCAAAGATGCTATTTTGTGCAATTTCATGAGATTTTTGAATTATAAAAAAAGTTTTANNNNNNNNNNTTAAAAATTCATCCATAGAAAATGTAGAAAAAATAATTGCGGTTTTTTTGAGCTATAGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATGACAATTTTTGACATTTTTTCTTCCGGAAAACGACCATACATGAATCTATAAACACTAATTAATTTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGGTCAAAAATTAATTTGCAGTTCGGAATTGTTCTGAGGGAGAGCGTTTAGGTTAATCAAATCGATTTTGTACAGCGAGTTCCSCTTAAAATGTGCTCCAACGCAAAACGGATTACTGTAGTAATTTTTTTTTTAAATTTCTCGAAAAAAAGTTTTCAAAGCTTTTTTATGCGAATTTTGAATTTTTTCGCCAAAATAGTAGAAAAACTAAATTCAGAATTTCCAATGAGAATTCCTTGCACTTTTCCTCTCCCAGATAATTGCGGATTTCCGCAAAAATCCTTTCTGTTTGCATTTCTCTTCGAAAATTGCTTTTTCTTTAAAGGAAAAATTCTAATTTACGATTTTCCTTTTTAATTTAGAAAATTTCAGCATTTTGCGATTTTTAAGCCTTGAACATCGCTGAAAATACGTTTTTGTGCATTTTTGCGCTGCGGTGAACAAAACTTTTTGCCGCTCAGGTTACTGTAGAAAAGGGGATTTTTTGGCGAATTTTCAAGAAAATCATTTTGATTTTTATGATTTCTGTCAGAAATCTAAAAAAGGTTTTTCTTCATATAATTTTTGAATTAAAAAAAAGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTCGGAATTGTTCTGAG</pcr_primer_p1>
		<pcr_primer_p2>AATTATCTGGGAGAGGAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAGTTCGGAATTGTTCTGAGGGAGAGCGTTTAGGTTAATCAAATCGATTTTGTACAGCGAGTTCCCCTTAAAATGTGCTCCAACGCAAAACGGATTACTGTAGTAATTTTTTTTTTAAATTTCTCGAAAAAAAGTTTTCAAAGCTTTTTTATGCGAATTTTGAATTTTTTCGCCAAAATAGTAGAAAAACTAAATTCAGAATTTCCAATGAGAATTCCTTGCACTTTTCCTCTCCCAGATAATT</canonical_amplicon>
		<polymorphic_amplicon>CAGTTCGGAATTGTTCTGAGGGAGAGCGTTTAGGTTAATCAAATCGATTTTGTACAGCGAGTTCCSCTTAAAATGTGCTCCAACGCAAAACGGATTACTGTAGTAATTTTTTTTTTAAATTTCTCGAAAAAAAGTTTTCAAAGCTTTTTTATGCGAATTTTGAATTTTTTCGCCAAAATAGTAGAAAAACTAAATTCAGAATTTCCAATGAGAATTCCTTGCACTTTTCCTCTCCCAGATAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29067</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>310104</contig_pos>
        <strand></strand>
        <context>GCAAAACGGA[T/C]TACTGTAGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CGATTTTGTACAGCGAGTTCCCCTTAAAATGTGCTCCAACGCAAAACGGA</left_flank>
        <right_flank>TACTGTAGTAATTTTTTTTTTAAATTTCTCGAAAAAAAGTTTTCAAAGCT</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTTTTTTTATAATCAAAAAACAACGCAAAGATGCTATTTTGTGCAATTTCATGAGATTTTTGAATTATAAAAAAAGTTTTANNNNNNNNNNTTAAAAATTCATCCATAGAAAATGTAGAAAAAATAATTGCGGTTTTTTTGAGCTATAGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATGACAATTTTTGACATTTTTTCTTCCGGAAAACGACCATACATGAATCTATAAACACTAATTAATTTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGGTCAAAAATTAATTTGCAGTTCGGAATTGTTCTGAGGGAGAGCGTTTAGGTTAATCAAATCGATTTTGTACAGCGAGTTCCCCTTAAAATGTGCTCCAACGCAAAACGGATTACTGTAGTAATTTTTTTTTTAAATTTCTCGAAAAAAAGTTTTCAAAGCTTTTTTATGCGAATTTTGAATTTTTTCGCCAAAATAGTAGAAAAACTAAATTCAGAATTTCCAATGAGAATTCCTTGCACTTTTCCTCTCCCAGATAATTGCGGATTTCCGCAAAAATCCTTTCTGTTTGCATTTCTCTTCGAAAATTGCTTTTTCTTTAAAGGAAAAATTCTAATTTACGATTTTCCTTTTTAATTTAGAAAATTTCAGCATTTTGCGATTTTTAAGCCTTGAACATCGCTGAAAATACGTTTTTGTGCATTTTTGCGCTGCGGTGAACAAAACTTTTTGCCGCTCAGGTTACTGTAGAAAAGGGGATTTTTTGGCGAATTTTCAAGAAAATCATTTTGATTTTTATGATTTCTGTCAGAAATCTAAAAAAGGTTTTTCTTCATATAATTTTTGAATTAAAAAAAAGAAAAAAAACCAATTTCCGAAAGAAAAAACTGTT</canonical>
            <polymorphic>AACTTTTTTTATAATCAAAAAACAACGCAAAGATGCTATTTTGTGCAATTTCATGAGATTTTTGAATTATAAAAAAAGTTTTANNNNNNNNNNTTAAAAATTCATCCATAGAAAATGTAGAAAAAATAATTGCGGTTTTTTTGAGCTATAGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATGACAATTTTTGACATTTTTTCTTCCGGAAAACGACCATACATGAATCTATAAACACTAATTAATTTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGGTCAAAAATTAATTTGCAGTTCGGAATTGTTCTGAGGGAGAGCGTTTAGGTTAATCAAATCGATTTTGTACAGCGAGTTCCCCTTAAAATGTGCTCCAACGCAAAACGGAYTACTGTAGTAATTTTTTTTTTAAATTTCTCGAAAAAAAGTTTTCAAAGCTTTTTTATGCGAATTTTGAATTTTTTCGCCAAAATAGTAGAAAAACTAAATTCAGAATTTCCAATGAGAATTCCTTGCACTTTTCCTCTCCCAGATAATTGCGGATTTCCGCAAAAATCCTTTCTGTTTGCATTTCTCTTCGAAAATTGCTTTTTCTTTAAAGGAAAAATTCTAATTTACGATTTTCCTTTTTAATTTAGAAAATTTCAGCATTTTGCGATTTTTAAGCCTTGAACATCGCTGAAAATACGTTTTTGTGCATTTTTGCGCTGCGGTGAACAAAACTTTTTGCCGCTCAGGTTACTGTAGAAAAGGGGATTTTTTGGCGAATTTTCAAGAAAATCATTTTGATTTTTATGATTTCTGTCAGAAATCTAAAAAAGGTTTTTCTTCATATAATTTTTGAATTAAAAAAAAGAAAAAAAACCAATTTCCGAAAGAAAAAACTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTCGGAATTGTTCTGAG</pcr_primer_p1>
		<pcr_primer_p2>AATTATCTGGGAGAGGAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAGTTCGGAATTGTTCTGAGGGAGAGCGTTTAGGTTAATCAAATCGATTTTGTACAGCGAGTTCCCCTTAAAATGTGCTCCAACGCAAAACGGATTACTGTAGTAATTTTTTTTTTAAATTTCTCGAAAAAAAGTTTTCAAAGCTTTTTTATGCGAATTTTGAATTTTTTCGCCAAAATAGTAGAAAAACTAAATTCAGAATTTCCAATGAGAATTCCTTGCACTTTTCCTCTCCCAGATAATT</canonical_amplicon>
		<polymorphic_amplicon>CAGTTCGGAATTGTTCTGAGGGAGAGCGTTTAGGTTAATCAAATCGATTTTGTACAGCGAGTTCCCCTTAAAATGTGCTCCAACGCAAAACGGAYTACTGTAGTAATTTTTTTTTTAAATTTCTCGAAAAAAAGTTTTCAAAGCTTTTTTATGCGAATTTTGAATTTTTTCGCCAAAATAGTAGAAAAACTAAATTCAGAATTTCCAATGAGAATTCCTTGCACTTTTCCTCTCCCAGATAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29068</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>310125</contig_pos>
        <strand></strand>
        <context>ATTTTTTTTT[T/C]AAATTTCTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCTTAAAATGTGCTCCAACGCAAAACGGATTACTGTAGTAATTTTTTTTT</left_flank>
        <right_flank>AAATTTCTCGAAAAAAAGTTTTCAAAGCTTTTTTATGCGAATTTTGAATT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAACGCAAAGATGCTATTTTGTGCAATTTCATGAGATTTTTGAATTATAAAAAAAGTTTTANNNNNNNNNNTTAAAAATTCATCCATAGAAAATGTAGAAAAAATAATTGCGGTTTTTTTGAGCTATAGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATGACAATTTTTGACATTTTTTCTTCCGGAAAACGACCATACATGAATCTATAAACACTAATTAATTTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGGTCAAAAATTAATTTGCAGTTCGGAATTGTTCTGAGGGAGAGCGTTTAGGTTAATCAAATCGATTTTGTACAGCGAGTTCCCCTTAAAATGTGCTCCAACGCAAAACGGATTACTGTAGTAATTTTTTTTTTAAATTTCTCGAAAAAAAGTTTTCAAAGCTTTTTTATGCGAATTTTGAATTTTTTCGCCAAAATAGTAGAAAAACTAAATTCAGAATTTCCAATGAGAATTCCTTGCACTTTTCCTCTCCCAGATAATTGCGGATTTCCGCAAAAATCCTTTCTGTTTGCATTTCTCTTCGAAAATTGCTTTTTCTTTAAAGGAAAAATTCTAATTTACGATTTTCCTTTTTAATTTAGAAAATTTCAGCATTTTGCGATTTTTAAGCCTTGAACATCGCTGAAAATACGTTTTTGTGCATTTTTGCGCTGCGGTGAACAAAACTTTTTGCCGCTCAGGTTACTGTAGAAAAGGGGATTTTTTGGCGAATTTTCAAGAAAATCATTTTGATTTTTATGATTTCTGTCAGAAATCTAAAAAAGGTTTTTCTTCATATAATTTTTGAATTAAAAAAAAGAAAAAAAACCAATTTCCGAAAGAAAAAACTGTTTTGTGCATTTTTGCGTCGCGA</canonical>
            <polymorphic>ACAACGCAAAGATGCTATTTTGTGCAATTTCATGAGATTTTTGAATTATAAAAAAAGTTTTANNNNNNNNNNTTAAAAATTCATCCATAGAAAATGTAGAAAAAATAATTGCGGTTTTTTTGAGCTATAGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATGACAATTTTTGACATTTTTTCTTCCGGAAAACGACCATACATGAATCTATAAACACTAATTAATTTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGGTCAAAAATTAATTTGCAGTTCGGAATTGTTCTGAGGGAGAGCGTTTAGGTTAATCAAATCGATTTTGTACAGCGAGTTCCCCTTAAAATGTGCTCCAACGCAAAACGGATTACTGTAGTAATTTTTTTTTYAAATTTCTCGAAAAAAAGTTTTCAAAGCTTTTTTATGCGAATTTTGAATTTTTTCGCCAAAATAGTAGAAAAACTAAATTCAGAATTTCCAATGAGAATTCCTTGCACTTTTCCTCTCCCAGATAATTGCGGATTTCCGCAAAAATCCTTTCTGTTTGCATTTCTCTTCGAAAATTGCTTTTTCTTTAAAGGAAAAATTCTAATTTACGATTTTCCTTTTTAATTTAGAAAATTTCAGCATTTTGCGATTTTTAAGCCTTGAACATCGCTGAAAATACGTTTTTGTGCATTTTTGCGCTGCGGTGAACAAAACTTTTTGCCGCTCAGGTTACTGTAGAAAAGGGGATTTTTTGGCGAATTTTCAAGAAAATCATTTTGATTTTTATGATTTCTGTCAGAAATCTAAAAAAGGTTTTTCTTCATATAATTTTTGAATTAAAAAAAAGAAAAAAAACCAATTTCCGAAAGAAAAAACTGTTTTGTGCATTTTTGCGTCGCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 313 187</canonical_bands>
                <polymorphic_bands>687 313</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>187 184 182 114 73 64 47 42 34 33 32 8</canonical_bands>
                <polymorphic_bands>234 184 182 114 73 64 42 34 33 32 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTTCGGAATTGTTCTGAG</pcr_primer_p1>
		<pcr_primer_p2>AATTATCTGGGAGAGGAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAGTTCGGAATTGTTCTGAGGGAGAGCGTTTAGGTTAATCAAATCGATTTTGTACAGCGAGTTCCCCTTAAAATGTGCTCCAACGCAAAACGGATTACTGTAGTAATTTTTTTTTTAAATTTCTCGAAAAAAAGTTTTCAAAGCTTTTTTATGCGAATTTTGAATTTTTTCGCCAAAATAGTAGAAAAACTAAATTCAGAATTTCCAATGAGAATTCCTTGCACTTTTCCTCTCCCAGATAATT</canonical_amplicon>
		<polymorphic_amplicon>CAGTTCGGAATTGTTCTGAGGGAGAGCGTTTAGGTTAATCAAATCGATTTTGTACAGCGAGTTCCCCTTAAAATGTGCTCCAACGCAAAACGGATTACTGTAGTAATTTTTTTTTYAAATTTCTCGAAAAAAAGTTTTCAAAGCTTTTTTATGCGAATTTTGAATTTTTTCGCCAAAATAGTAGAAAAACTAAATTCAGAATTTCCAATGAGAATTCCTTGCACTTTTCCTCTCCCAGATAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29069</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>313385</contig_pos>
        <strand></strand>
        <context>cgaaaatcac[C/T]ggttaacact</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTAGTTTTTGATGGGAAACCCGAATTTTGTAAGCTCGATGCGAAAATCAC</left_flank>
        <right_flank>GGTTAACACTGGAAAATCAGGTTTTTCGAAAATTTCTAAAATTAAAAAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTGGAATTGTGCCTGTTGGCTTTTTGGAAGTCTATTTAGACGATGAGGATGAGGATAATCAAACCGGAGGGGCGGTAATGGGAAGGAGAGGGACCGGAAGCGGTGGGAATGAATTTTCGGTAAGTTTGAAAACTTTGAATTGTGTTATAAAAGCTTCTAAATAAGCCAAAATTGTCAAATTTCCAAAAAATCGCTATTCTTGGGCTGAAAAACTATGTTTTTTTTTTCGAAAACTGCATTTGAATGCCTAAAATTGTGAATTTTCAGCCTTACTTTTTGATTTTCTCACACAATTAGTTCCAAATTCGAACTTTACACTAAAAATTACCCTAGAAACCGTCAAAAAACGGGTAAAAACAACCGTGGCCGAACTTTCCAAATGGTGGCCTAGAAAAATCGAAAAACTCGGCCATCTCGAAATTTTTCAATTTTTCATAGTCTCTTGGGTAGTTTTTGATGGGAAACCCGAATTTTGTAAGCTCGATGCGAAAATCACCGGTTAACACTGGAAAATCAGGTTTTTCGAAAATTTCTAAAATTAAAAAAATATCGAAAATTTTTAAATAAGTCCGATTGCGATAAAAATTGATATCACGAGCTGAAATGGCTCGAAAATCTTTTTCTGAGTTTTTTTAAAATTTTTTCAAAAATTGAAAAAATGCTTTTCCTCAAAAATTAATGCCGAGCAATCTAGGTCAAAACTATGCCAAATTTAATTGTTTTTTTTGCAGTTTGGCACAAATCGCTCCTCGTTCATCTTCACGACCAACGAATCCACCTCCGATTGGCGTCCTCCCACAAATCGAACTGCAAATAACACCGATTGGGCAACATTTGGGGATCCTTCAAAAGCCACGTCATCAAGCTCCAAACCCAACACCCAATGGGCGACATTTGGCGAGGAATGGATTGCTCCAATTCAGCTCTCCAAAAGCTCCGCCCCCGCACGCCCACCGCCCCCAAAACAGAGCTCAATCACGTCGCCAACCGCCGACAT</canonical>
            <polymorphic>AAACTGGAATTGTGCCTGTTGGCTTTTTGGAAGTCTATTTAGACGATGAGGATGAGGATAATCAAACCGGAGGGGCGGTAATGGGAAGGAGAGGGACCGGAAGCGGTGGGAATGAATTTTCGGTAAGTTTGAAAACTTTGAATTGTGTTATAAAAGCTTCTAAATAAGCCAAAATTGTCAAATTTCCAAAAAATCGCTATTCTTGGGCTGAAAAACTATGTTTTTTTTTTCGAAAACTGCATTTGAATGCCTAAAATTGTGAATTTTCAGCCTTACTTTTTGATTTTCTCACACAATTAGTTCCAAATTCGAACTTTACACTAAAAATTACCCTAGAAACCGTCAAAAAACGGGTAAAAACAACCGTGGCCGAACTTTCCAAATGGTGGCCTAGAAAAATCGAAAAACTCGGCCATCTCGAAATTTTTCAATTTTTCATAGTCTCTTGGGTAGTTTTTGATGGGAAACCCGAATTTTGTAAGCTCGATGCGAAAATCACYGGTTAACACTGGAAAATCAGGTTTTTCGAAAATTTCTAAAATTAAAAAAATATCGAAAATTTTTAAATAAGTCCGATTGCGATAAAAATTGATATCACGAGCTGAAATGGCTCGAAAATCTTTTTCTGAGTTTTTTTAAAATTTTTTCAAAAATTGAAAAAATGCTTTTCCTCAAAAATTAATGCCGAGCAATCTAGGTCAAAACTATGCCAAATTTAATTGTTTTTTTTGCAGTTTGGCACAAATCGCTCCTCGTTCATCTTCACGACCAACGAATCCACCTCCGATTGGCGTCCTCCCACAAATCGAACTGCAAATAACACCGATTGGGCAACATTTGGGGATCCTTCAAAAGCCACGTCATCAAGCTCCAAACCCAACACCCAATGGGCGACATTTGGCGAGGAATGGATTGCTCCAATTCAGCTCTCCAAAAGCTCCGCCCCCGCACGCCCACCGCCCCCAAAACAGAGCTCAATCACGTCGCCAACCGCCGACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACCGGT</site>
                <isoschizomers>
                    <enzyme>AgeI</enzyme>
                    <enzyme>AsiAI</enzyme>
                    <enzyme>BshTI</enzyme>
                    <enzyme>CspAI</enzyme>
                    <enzyme>PinAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>502 402 66 30</canonical_bands>
                <polymorphic_bands>904 66 30</polymorphic_bands>
            </assay>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 402 67 30</canonical_bands>
                <polymorphic_bands>903 67 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACTTTTTGATTTTCTCACACAA</pcr_primer_p1>
		<pcr_primer_p2>GGCATAGTTTTGACCTAGATTG</pcr_primer_p2>
		<pcr_amplicon_size>438</pcr_amplicon_size>
		<canonical_amplicon>TACTTTTTGATTTTCTCACACAATTAGTTCCAAATTCGAACTTTACACTAAAAATTACCCTAGAAACCGTCAAAAAACGGGTAAAAACAACCGTGGCCGAACTTTCCAAATGGTGGCCTAGAAAAATCGAAAAACTCGGCCATCTCGAAATTTTTCAATTTTTCATAGTCTCTTGGGTAGTTTTTGATGGGAAACCCGAATTTTGTAAGCTCGATGCGAAAATCACCGGTTAACACTGGAAAATCAGGTTTTTCGAAAATTTCTAAAATTAAAAAAATATCGAAAATTTTTAAATAAGTCCGATTGCGATAAAAATTGATATCACGAGCTGAAATGGCTCGAAAATCTTTTTCTGAGTTTTTTTAAAATTTTTTCAAAAATTGAAAAAATGCTTTTCCTCAAAAATTAATGCCGAGCAATCTAGGTCAAAACTATGCC</canonical_amplicon>
		<polymorphic_amplicon>TACTTTTTGATTTTCTCACACAATTAGTTCCAAATTCGAACTTTACACTAAAAATTACCCTAGAAACCGTCAAAAAACGGGTAAAAACAACCGTGGCCGAACTTTCCAAATGGTGGCCTAGAAAAATCGAAAAACTCGGCCATCTCGAAATTTTTCAATTTTTCATAGTCTCTTGGGTAGTTTTTGATGGGAAACCCGAATTTTGTAAGCTCGATGCGAAAATCACYGGTTAACACTGGAAAATCAGGTTTTTCGAAAATTTCTAAAATTAAAAAAATATCGAAAATTTTTAAATAAGTCCGATTGCGATAAAAATTGATATCACGAGCTGAAATGGCTCGAAAATCTTTTTCTGAGTTTTTTTAAAATTTTTTCAAAAATTGAAAAAATGCTTTTCCTCAAAAATTAATGCCGAGCAATCTAGGTCAAAACTATGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29070</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>313397</contig_pos>
        <strand></strand>
        <context>gttaacactg[G/A]aaaatcaggt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGGAAACCCGAATTTTGTAAGCTCGATGCGAAAATCACCGGTTAACACTG</left_flank>
        <right_flank>AAAATCAGGTTTTTCGAAAATTTCTAAAATTAAAAAAATATCGAAAATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCCTGTTGGCTTTTTGGAAGTCTATTTAGACGATGAGGATGAGGATAATCAAACCGGAGGGGCGGTAATGGGAAGGAGAGGGACCGGAAGCGGTGGGAATGAATTTTCGGTAAGTTTGAAAACTTTGAATTGTGTTATAAAAGCTTCTAAATAAGCCAAAATTGTCAAATTTCCAAAAAATCGCTATTCTTGGGCTGAAAAACTATGTTTTTTTTTTCGAAAACTGCATTTGAATGCCTAAAATTGTGAATTTTCAGCCTTACTTTTTGATTTTCTCACACAATTAGTTCCAAATTCGAACTTTACACTAAAAATTACCCTAGAAACCGTCAAAAAACGGGTAAAAACAACCGTGGCCGAACTTTCCAAATGGTGGCCTAGAAAAATCGAAAAACTCGGCCATCTCGAAATTTTTCAATTTTTCATAGTCTCTTGGGTAGTTTTTGATGGGAAACCCGAATTTTGTAAGCTCGATGCGAAAATCACCGGTTAACACTGGAAAATCAGGTTTTTCGAAAATTTCTAAAATTAAAAAAATATCGAAAATTTTTAAATAAGTCCGATTGCGATAAAAATTGATATCACGAGCTGAAATGGCTCGAAAATCTTTTTCTGAGTTTTTTTAAAATTTTTTCAAAAATTGAAAAAATGCTTTTCCTCAAAAATTAATGCCGAGCAATCTAGGTCAAAACTATGCCAAATTTAATTGTTTTTTTTGCAGTTTGGCACAAATCGCTCCTCGTTCATCTTCACGACCAACGAATCCACCTCCGATTGGCGTCCTCCCACAAATCGAACTGCAAATAACACCGATTGGGCAACATTTGGGGATCCTTCAAAAGCCACGTCATCAAGCTCCAAACCCAACACCCAATGGGCGACATTTGGCGAGGAATGGATTGCTCCAATTCAGCTCTCCAAAAGCTCCGCCCCCGCACGCCCACCGCCCCCAAAACAGAGCTCAATCACGTCGCCAACCGCCGACATCGGCGACGTTTC</canonical>
            <polymorphic>TGCCTGTTGGCTTTTTGGAAGTCTATTTAGACGATGAGGATGAGGATAATCAAACCGGAGGGGCGGTAATGGGAAGGAGAGGGACCGGAAGCGGTGGGAATGAATTTTCGGTAAGTTTGAAAACTTTGAATTGTGTTATAAAAGCTTCTAAATAAGCCAAAATTGTCAAATTTCCAAAAAATCGCTATTCTTGGGCTGAAAAACTATGTTTTTTTTTTCGAAAACTGCATTTGAATGCCTAAAATTGTGAATTTTCAGCCTTACTTTTTGATTTTCTCACACAATTAGTTCCAAATTCGAACTTTACACTAAAAATTACCCTAGAAACCGTCAAAAAACGGGTAAAAACAACCGTGGCCGAACTTTCCAAATGGTGGCCTAGAAAAATCGAAAAACTCGGCCATCTCGAAATTTTTCAATTTTTCATAGTCTCTTGGGTAGTTTTTGATGGGAAACCCGAATTTTGTAAGCTCGATGCGAAAATCACCGGTTAACACTGRAAAATCAGGTTTTTCGAAAATTTCTAAAATTAAAAAAATATCGAAAATTTTTAAATAAGTCCGATTGCGATAAAAATTGATATCACGAGCTGAAATGGCTCGAAAATCTTTTTCTGAGTTTTTTTAAAATTTTTTCAAAAATTGAAAAAATGCTTTTCCTCAAAAATTAATGCCGAGCAATCTAGGTCAAAACTATGCCAAATTTAATTGTTTTTTTTGCAGTTTGGCACAAATCGCTCCTCGTTCATCTTCACGACCAACGAATCCACCTCCGATTGGCGTCCTCCCACAAATCGAACTGCAAATAACACCGATTGGGCAACATTTGGGGATCCTTCAAAAGCCACGTCATCAAGCTCCAAACCCAACACCCAATGGGCGACATTTGGCGAGGAATGGATTGCTCCAATTCAGCTCTCCAAAAGCTCCGCCCCCGCACGCCCACCGCCCCCAAAACAGAGCTCAATCACGTCGCCAACCGCCGACATCGGCGACGTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTTTTTGATTTTCTCACACAA</pcr_primer_p1>
		<pcr_primer_p2>GGCATAGTTTTGACCTAGATTG</pcr_primer_p2>
		<pcr_amplicon_size>438</pcr_amplicon_size>
		<canonical_amplicon>TACTTTTTGATTTTCTCACACAATTAGTTCCAAATTCGAACTTTACACTAAAAATTACCCTAGAAACCGTCAAAAAACGGGTAAAAACAACCGTGGCCGAACTTTCCAAATGGTGGCCTAGAAAAATCGAAAAACTCGGCCATCTCGAAATTTTTCAATTTTTCATAGTCTCTTGGGTAGTTTTTGATGGGAAACCCGAATTTTGTAAGCTCGATGCGAAAATCACCGGTTAACACTGGAAAATCAGGTTTTTCGAAAATTTCTAAAATTAAAAAAATATCGAAAATTTTTAAATAAGTCCGATTGCGATAAAAATTGATATCACGAGCTGAAATGGCTCGAAAATCTTTTTCTGAGTTTTTTTAAAATTTTTTCAAAAATTGAAAAAATGCTTTTCCTCAAAAATTAATGCCGAGCAATCTAGGTCAAAACTATGCC</canonical_amplicon>
		<polymorphic_amplicon>TACTTTTTGATTTTCTCACACAATTAGTTCCAAATTCGAACTTTACACTAAAAATTACCCTAGAAACCGTCAAAAAACGGGTAAAAACAACCGTGGCCGAACTTTCCAAATGGTGGCCTAGAAAAATCGAAAAACTCGGCCATCTCGAAATTTTTCAATTTTTCATAGTCTCTTGGGTAGTTTTTGATGGGAAACCCGAATTTTGTAAGCTCGATGCGAAAATCACCGGTTAACACTGRAAAATCAGGTTTTTCGAAAATTTCTAAAATTAAAAAAATATCGAAAATTTTTAAATAAGTCCGATTGCGATAAAAATTGATATCACGAGCTGAAATGGCTCGAAAATCTTTTTCTGAGTTTTTTTAAAATTTTTTCAAAAATTGAAAAAATGCTTTTCCTCAAAAATTAATGCCGAGCAATCTAGGTCAAAACTATGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29071</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>313436</contig_pos>
        <strand></strand>
        <context>attaaaAAAA[T/A]Atcgaaaatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GGTTAACACTGGAAAATCAGGTTTTTCGAAAATTTCTAAAATTAAAAAAA</left_flank>
        <right_flank>ATCGAAAATTTTTAAATAAGTCCGATTGCGATAAAAATTGATATCACGAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAGGATAATCAAACCGGAGGGGCGGTAATGGGAAGGAGAGGGACCGGAAGCGGTGGGAATGAATTTTCGGTAAGTTTGAAAACTTTGAATTGTGTTATAAAAGCTTCTAAATAAGCCAAAATTGTCAAATTTCCAAAAAATCGCTATTCTTGGGCTGAAAAACTATGTTTTTTTTTTCGAAAACTGCATTTGAATGCCTAAAATTGTGAATTTTCAGCCTTACTTTTTGATTTTCTCACACAATTAGTTCCAAATTCGAACTTTACACTAAAAATTACCCTAGAAACCGTCAAAAAACGGGTAAAAACAACCGTGGCCGAACTTTCCAAATGGTGGCCTAGAAAAATCGAAAAACTCGGCCATCTCGAAATTTTTCAATTTTTCATAGTCTCTTGGGTAGTTTTTGATGGGAAACCCGAATTTTGTAAGCTCGATGCGAAAATCACCGGTTAACACTGGAAAATCAGGTTTTTCGAAAATTTCTAAAATTAAAAAAATATCGAAAATTTTTAAATAAGTCCGATTGCGATAAAAATTGATATCACGAGCTGAAATGGCTCGAAAATCTTTTTCTGAGTTTTTTTAAAATTTTTTCAAAAATTGAAAAAATGCTTTTCCTCAAAAATTAATGCCGAGCAATCTAGGTCAAAACTATGCCAAATTTAATTGTTTTTTTTGCAGTTTGGCACAAATCGCTCCTCGTTCATCTTCACGACCAACGAATCCACCTCCGATTGGCGTCCTCCCACAAATCGAACTGCAAATAACACCGATTGGGCAACATTTGGGGATCCTTCAAAAGCCACGTCATCAAGCTCCAAACCCAACACCCAATGGGCGACATTTGGCGAGGAATGGATTGCTCCAATTCAGCTCTCCAAAAGCTCCGCCCCCGCACGCCCACCGCCCCCAAAACAGAGCTCAATCACGTCGCCAACCGCCGACATCGGCGACGTTTCGGAAATGTTTGGCACGGTGCCAAGCGCGCCGAAAGCGCC</canonical>
            <polymorphic>ATGAGGATAATCAAACCGGAGGGGCGGTAATGGGAAGGAGAGGGACCGGAAGCGGTGGGAATGAATTTTCGGTAAGTTTGAAAACTTTGAATTGTGTTATAAAAGCTTCTAAATAAGCCAAAATTGTCAAATTTCCAAAAAATCGCTATTCTTGGGCTGAAAAACTATGTTTTTTTTTTCGAAAACTGCATTTGAATGCCTAAAATTGTGAATTTTCAGCCTTACTTTTTGATTTTCTCACACAATTAGTTCCAAATTCGAACTTTACACTAAAAATTACCCTAGAAACCGTCAAAAAACGGGTAAAAACAACCGTGGCCGAACTTTCCAAATGGTGGCCTAGAAAAATCGAAAAACTCGGCCATCTCGAAATTTTTCAATTTTTCATAGTCTCTTGGGTAGTTTTTGATGGGAAACCCGAATTTTGTAAGCTCGATGCGAAAATCACCGGTTAACACTGGAAAATCAGGTTTTTCGAAAATTTCTAAAATTAAAAAAAWATCGAAAATTTTTAAATAAGTCCGATTGCGATAAAAATTGATATCACGAGCTGAAATGGCTCGAAAATCTTTTTCTGAGTTTTTTTAAAATTTTTTCAAAAATTGAAAAAATGCTTTTCCTCAAAAATTAATGCCGAGCAATCTAGGTCAAAACTATGCCAAATTTAATTGTTTTTTTTGCAGTTTGGCACAAATCGCTCCTCGTTCATCTTCACGACCAACGAATCCACCTCCGATTGGCGTCCTCCCACAAATCGAACTGCAAATAACACCGATTGGGCAACATTTGGGGATCCTTCAAAAGCCACGTCATCAAGCTCCAAACCCAACACCCAATGGGCGACATTTGGCGAGGAATGGATTGCTCCAATTCAGCTCTCCAAAAGCTCCGCCCCCGCACGCCCACCGCCCCCAAAACAGAGCTCAATCACGTCGCCAACCGCCGACATCGGCGACGTTTCGGAAATGTTTGGCACGGTGCCAAGCGCGCCGAAAGCGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTTTTTGATTTTCTCACACAA</pcr_primer_p1>
		<pcr_primer_p2>GGCATAGTTTTGACCTAGATTG</pcr_primer_p2>
		<pcr_amplicon_size>438</pcr_amplicon_size>
		<canonical_amplicon>TACTTTTTGATTTTCTCACACAATTAGTTCCAAATTCGAACTTTACACTAAAAATTACCCTAGAAACCGTCAAAAAACGGGTAAAAACAACCGTGGCCGAACTTTCCAAATGGTGGCCTAGAAAAATCGAAAAACTCGGCCATCTCGAAATTTTTCAATTTTTCATAGTCTCTTGGGTAGTTTTTGATGGGAAACCCGAATTTTGTAAGCTCGATGCGAAAATCACCGGTTAACACTGGAAAATCAGGTTTTTCGAAAATTTCTAAAATTAAAAAAATATCGAAAATTTTTAAATAAGTCCGATTGCGATAAAAATTGATATCACGAGCTGAAATGGCTCGAAAATCTTTTTCTGAGTTTTTTTAAAATTTTTTCAAAAATTGAAAAAATGCTTTTCCTCAAAAATTAATGCCGAGCAATCTAGGTCAAAACTATGCC</canonical_amplicon>
		<polymorphic_amplicon>TACTTTTTGATTTTCTCACACAATTAGTTCCAAATTCGAACTTTACACTAAAAATTACCCTAGAAACCGTCAAAAAACGGGTAAAAACAACCGTGGCCGAACTTTCCAAATGGTGGCCTAGAAAAATCGAAAAACTCGGCCATCTCGAAATTTTTCAATTTTTCATAGTCTCTTGGGTAGTTTTTGATGGGAAACCCGAATTTTGTAAGCTCGATGCGAAAATCACCGGTTAACACTGGAAAATCAGGTTTTTCGAAAATTTCTAAAATTAAAAAAAWATCGAAAATTTTTAAATAAGTCCGATTGCGATAAAAATTGATATCACGAGCTGAAATGGCTCGAAAATCTTTTTCTGAGTTTTTTTAAAATTTTTTCAAAAATTGAAAAAATGCTTTTCCTCAAAAATTAATGCCGAGCAATCTAGGTCAAAACTATGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29072</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>313449</contig_pos>
        <strand></strand>
        <context>cgaaaatttt[T/C]aaataagtcc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAATCAGGTTTTTCGAAAATTTCTAAAATTAAAAAAATATCGAAAATTTT</left_flank>
        <right_flank>AAATAAGTCCGATTGCGATAAAAATTGATATCACGAGCTGAAATGGCTCG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCGGAGGGGCGGTAATGGGAAGGAGAGGGACCGGAAGCGGTGGGAATGAATTTTCGGTAAGTTTGAAAACTTTGAATTGTGTTATAAAAGCTTCTAAATAAGCCAAAATTGTCAAATTTCCAAAAAATCGCTATTCTTGGGCTGAAAAACTATGTTTTTTTTTTCGAAAACTGCATTTGAATGCCTAAAATTGTGAATTTTCAGCCTTACTTTTTGATTTTCTCACACAATTAGTTCCAAATTCGAACTTTACACTAAAAATTACCCTAGAAACCGTCAAAAAACGGGTAAAAACAACCGTGGCCGAACTTTCCAAATGGTGGCCTAGAAAAATCGAAAAACTCGGCCATCTCGAAATTTTTCAATTTTTCATAGTCTCTTGGGTAGTTTTTGATGGGAAACCCGAATTTTGTAAGCTCGATGCGAAAATCACCGGTTAACACTGGAAAATCAGGTTTTTCGAAAATTTCTAAAATTAAAAAAATATCGAAAATTTTTAAATAAGTCCGATTGCGATAAAAATTGATATCACGAGCTGAAATGGCTCGAAAATCTTTTTCTGAGTTTTTTTAAAATTTTTTCAAAAATTGAAAAAATGCTTTTCCTCAAAAATTAATGCCGAGCAATCTAGGTCAAAACTATGCCAAATTTAATTGTTTTTTTTGCAGTTTGGCACAAATCGCTCCTCGTTCATCTTCACGACCAACGAATCCACCTCCGATTGGCGTCCTCCCACAAATCGAACTGCAAATAACACCGATTGGGCAACATTTGGGGATCCTTCAAAAGCCACGTCATCAAGCTCCAAACCCAACACCCAATGGGCGACATTTGGCGAGGAATGGATTGCTCCAATTCAGCTCTCCAAAAGCTCCGCCCCCGCACGCCCACCGCCCCCAAAACAGAGCTCAATCACGTCGCCAACCGCCGACATCGGCGACGTTTCGGAAATGTTTGGCACGGTGCCAAGCGCGCCGAAAGCGCCACAGCAGCAACCA</canonical>
            <polymorphic>AACCGGAGGGGCGGTAATGGGAAGGAGAGGGACCGGAAGCGGTGGGAATGAATTTTCGGTAAGTTTGAAAACTTTGAATTGTGTTATAAAAGCTTCTAAATAAGCCAAAATTGTCAAATTTCCAAAAAATCGCTATTCTTGGGCTGAAAAACTATGTTTTTTTTTTCGAAAACTGCATTTGAATGCCTAAAATTGTGAATTTTCAGCCTTACTTTTTGATTTTCTCACACAATTAGTTCCAAATTCGAACTTTACACTAAAAATTACCCTAGAAACCGTCAAAAAACGGGTAAAAACAACCGTGGCCGAACTTTCCAAATGGTGGCCTAGAAAAATCGAAAAACTCGGCCATCTCGAAATTTTTCAATTTTTCATAGTCTCTTGGGTAGTTTTTGATGGGAAACCCGAATTTTGTAAGCTCGATGCGAAAATCACCGGTTAACACTGGAAAATCAGGTTTTTCGAAAATTTCTAAAATTAAAAAAATATCGAAAATTTTYAAATAAGTCCGATTGCGATAAAAATTGATATCACGAGCTGAAATGGCTCGAAAATCTTTTTCTGAGTTTTTTTAAAATTTTTTCAAAAATTGAAAAAATGCTTTTCCTCAAAAATTAATGCCGAGCAATCTAGGTCAAAACTATGCCAAATTTAATTGTTTTTTTTGCAGTTTGGCACAAATCGCTCCTCGTTCATCTTCACGACCAACGAATCCACCTCCGATTGGCGTCCTCCCACAAATCGAACTGCAAATAACACCGATTGGGCAACATTTGGGGATCCTTCAAAAGCCACGTCATCAAGCTCCAAACCCAACACCCAATGGGCGACATTTGGCGAGGAATGGATTGCTCCAATTCAGCTCTCCAAAAGCTCCGCCCCCGCACGCCCACCGCCCCCAAAACAGAGCTCAATCACGTCGCCAACCGCCGACATCGGCGACGTTTCGGAAATGTTTGGCACGGTGCCAAGCGCGCCGAAAGCGCCACAGCAGCAACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 427 73</canonical_bands>
                <polymorphic_bands>573 427</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>439 348 73 43 39 37 21</canonical_bands>
                <polymorphic_bands>439 348 94 43 39 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACTTTTTGATTTTCTCACACAA</pcr_primer_p1>
		<pcr_primer_p2>GGCATAGTTTTGACCTAGATTG</pcr_primer_p2>
		<pcr_amplicon_size>438</pcr_amplicon_size>
		<canonical_amplicon>TACTTTTTGATTTTCTCACACAATTAGTTCCAAATTCGAACTTTACACTAAAAATTACCCTAGAAACCGTCAAAAAACGGGTAAAAACAACCGTGGCCGAACTTTCCAAATGGTGGCCTAGAAAAATCGAAAAACTCGGCCATCTCGAAATTTTTCAATTTTTCATAGTCTCTTGGGTAGTTTTTGATGGGAAACCCGAATTTTGTAAGCTCGATGCGAAAATCACCGGTTAACACTGGAAAATCAGGTTTTTCGAAAATTTCTAAAATTAAAAAAATATCGAAAATTTTTAAATAAGTCCGATTGCGATAAAAATTGATATCACGAGCTGAAATGGCTCGAAAATCTTTTTCTGAGTTTTTTTAAAATTTTTTCAAAAATTGAAAAAATGCTTTTCCTCAAAAATTAATGCCGAGCAATCTAGGTCAAAACTATGCC</canonical_amplicon>
		<polymorphic_amplicon>TACTTTTTGATTTTCTCACACAATTAGTTCCAAATTCGAACTTTACACTAAAAATTACCCTAGAAACCGTCAAAAAACGGGTAAAAACAACCGTGGCCGAACTTTCCAAATGGTGGCCTAGAAAAATCGAAAAACTCGGCCATCTCGAAATTTTTCAATTTTTCATAGTCTCTTGGGTAGTTTTTGATGGGAAACCCGAATTTTGTAAGCTCGATGCGAAAATCACCGGTTAACACTGGAAAATCAGGTTTTTCGAAAATTTCTAAAATTAAAAAAATATCGAAAATTTTYAAATAAGTCCGATTGCGATAAAAATTGATATCACGAGCTGAAATGGCTCGAAAATCTTTTTCTGAGTTTTTTTAAAATTTTTTCAAAAATTGAAAAAATGCTTTTCCTCAAAAATTAATGCCGAGCAATCTAGGTCAAAACTATGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29073</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>313597</contig_pos>
        <strand></strand>
        <context>AAACTATGCC[A/G]AATTTAATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGCTTTTCCTCAAAAATTAATGCCGAGCAATCTAGGTCAAAACTATGCC</left_flank>
        <right_flank>AATTTAATTGTTTTTTTTGCAGTTTGGCACAAATCGCTCCTCGTTCATCT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTATGTTTTTTTTTTCGAAAACTGCATTTGAATGCCTAAAATTGTGAATTTTCAGCCTTACTTTTTGATTTTCTCACACAATTAGTTCCAAATTCGAACTTTACACTAAAAATTACCCTAGAAACCGTCAAAAAACGGGTAAAAACAACCGTGGCCGAACTTTCCAAATGGTGGCCTAGAAAAATCGAAAAACTCGGCCATCTCGAAATTTTTCAATTTTTCATAGTCTCTTGGGTAGTTTTTGATGGGAAACCCGAATTTTGTAAGCTCGATGCGAAAATCACCGGTTAACACTGGAAAATCAGGTTTTTCGAAAATTTCTAAAATTAAAAAAATATCGAAAATTTTTAAATAAGTCCGATTGCGATAAAAATTGATATCACGAGCTGAAATGGCTCGAAAATCTTTTTCTGAGTTTTTTTAAAATTTTTTCAAAAATTGAAAAAATGCTTTTCCTCAAAAATTAATGCCGAGCAATCTAGGTCAAAACTATGCCAAATTTAATTGTTTTTTTTGCAGTTTGGCACAAATCGCTCCTCGTTCATCTTCACGACCAACGAATCCACCTCCGATTGGCGTCCTCCCACAAATCGAACTGCAAATAACACCGATTGGGCAACATTTGGGGATCCTTCAAAAGCCACGTCATCAAGCTCCAAACCCAACACCCAATGGGCGACATTTGGCGAGGAATGGATTGCTCCAATTCAGCTCTCCAAAAGCTCCGCCCCCGCACGCCCACCGCCCCCAAAACAGAGCTCAATCACGTCGCCAACCGCCGACATCGGCGACGTTTCGGAAATGTTTGGCACGGTGCCAAGCGCGCCGAAAGCGCCACAGCAGCAACCAAGTGGTGTCATTCATTCTGCGAGTGATTTTGAGATTGGACTGATTTCGGCCACGGAGGGAGCCAATAATGATGAGGATAAACGGTGTCGAATTGTGGAGGAGTTGATTAGCTCGGAATTGCAGTTTATCAGTGATATCAATAGTTATA</canonical>
            <polymorphic>AAACTATGTTTTTTTTTTCGAAAACTGCATTTGAATGCCTAAAATTGTGAATTTTCAGCCTTACTTTTTGATTTTCTCACACAATTAGTTCCAAATTCGAACTTTACACTAAAAATTACCCTAGAAACCGTCAAAAAACGGGTAAAAACAACCGTGGCCGAACTTTCCAAATGGTGGCCTAGAAAAATCGAAAAACTCGGCCATCTCGAAATTTTTCAATTTTTCATAGTCTCTTGGGTAGTTTTTGATGGGAAACCCGAATTTTGTAAGCTCGATGCGAAAATCACCGGTTAACACTGGAAAATCAGGTTTTTCGAAAATTTCTAAAATTAAAAAAATATCGAAAATTTTTAAATAAGTCCGATTGCGATAAAAATTGATATCACGAGCTGAAATGGCTCGAAAATCTTTTTCTGAGTTTTTTTAAAATTTTTTCAAAAATTGAAAAAATGCTTTTCCTCAAAAATTAATGCCGAGCAATCTAGGTCAAAACTATGCCRAATTTAATTGTTTTTTTTGCAGTTTGGCACAAATCGCTCCTCGTTCATCTTCACGACCAACGAATCCACCTCCGATTGGCGTCCTCCCACAAATCGAACTGCAAATAACACCGATTGGGCAACATTTGGGGATCCTTCAAAAGCCACGTCATCAAGCTCCAAACCCAACACCCAATGGGCGACATTTGGCGAGGAATGGATTGCTCCAATTCAGCTCTCCAAAAGCTCCGCCCCCGCACGCCCACCGCCCCCAAAACAGAGCTCAATCACGTCGCCAACCGCCGACATCGGCGACGTTTCGGAAATGTTTGGCACGGTGCCAAGCGCGCCGAAAGCGCCACAGCAGCAACCAAGTGGTGTCATTCATTCTGCGAGTGATTTTGAGATTGGACTGATTTCGGCCACGGAGGGAGCCAATAATGATGAGGATAAACGGTGTCGAATTGTGGAGGAGTTGATTAGCTCGGAATTGCAGTTTATCAGTGATATCAATAGTTATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>500 116 82 73 59 50 49 44 27</canonical_bands>
                <polymorphic_bands>573 116 82 59 50 49 44 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGATTTTCTCACACAATTAG</pcr_primer_p1>
		<pcr_primer_p2>GTGTTATTTGCAGTTCGATTT</pcr_primer_p2>
		<pcr_amplicon_size>547</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGATTTTCTCACACAATTAGTTCCAAATTCGAACTTTACACTAAAAATTACCCTAGAAACCGTCAAAAAACGGGTAAAAACAACCGTGGCCGAACTTTCCAAATGGTGGCCTAGAAAAATCGAAAAACTCGGCCATCTCGAAATTTTTCAATTTTTCATAGTCTCTTGGGTAGTTTTTGATGGGAAACCCGAATTTTGTAAGCTCGATGCGAAAATCACCGGTTAACACTGGAAAATCAGGTTTTTCGAAAATTTCTAAAATTAAAAAAATATCGAAAATTTTTAAATAAGTCCGATTGCGATAAAAATTGATATCACGAGCTGAAATGGCTCGAAAATCTTTTTCTGAGTTTTTTTAAAATTTTTTCAAAAATTGAAAAAATGCTTTTCCTCAAAAATTAATGCCGAGCAATCTAGGTCAAAACTATGCCAAATTTAATTGTTTTTTTTGCAGTTTGGCACAAATCGCTCCTCGTTCATCTTCACGACCAACGAATCCACCTCCGATTGGCGTCCTCCCACAAATCGAACTGCAAATAACAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGATTTTCTCACACAATTAGTTCCAAATTCGAACTTTACACTAAAAATTACCCTAGAAACCGTCAAAAAACGGGTAAAAACAACCGTGGCCGAACTTTCCAAATGGTGGCCTAGAAAAATCGAAAAACTCGGCCATCTCGAAATTTTTCAATTTTTCATAGTCTCTTGGGTAGTTTTTGATGGGAAACCCGAATTTTGTAAGCTCGATGCGAAAATCACCGGTTAACACTGGAAAATCAGGTTTTTCGAAAATTTCTAAAATTAAAAAAATATCGAAAATTTTTAAATAAGTCCGATTGCGATAAAAATTGATATCACGAGCTGAAATGGCTCGAAAATCTTTTTCTGAGTTTTTTTAAAATTTTTTCAAAAATTGAAAAAATGCTTTTCCTCAAAAATTAATGCCGAGCAATCTAGGTCAAAACTATGCCRAATTTAATTGTTTTTTTTGCAGTTTGGCACAAATCGCTCCTCGTTCATCTTCACGACCAACGAATCCACCTCCGATTGGCGTCCTCCCACAAATCGAACTGCAAATAACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29074</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>313648</contig_pos>
        <strand></strand>
        <context>TCGTTCATCT[T/C]CACGACCAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATTTAATTGTTTTTTTTGCAGTTTGGCACAAATCGCTCCTCGTTCATCT</left_flank>
        <right_flank>CACGACCAACGAATCCACCTCCGATTGGCGTCCTCCCACAAATCGAACTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCAGCCTTACTTTTTGATTTTCTCACACAATTAGTTCCAAATTCGAACTTTACACTAAAAATTACCCTAGAAACCGTCAAAAAACGGGTAAAAACAACCGTGGCCGAACTTTCCAAATGGTGGCCTAGAAAAATCGAAAAACTCGGCCATCTCGAAATTTTTCAATTTTTCATAGTCTCTTGGGTAGTTTTTGATGGGAAACCCGAATTTTGTAAGCTCGATGCGAAAATCACCGGTTAACACTGGAAAATCAGGTTTTTCGAAAATTTCTAAAATTAAAAAAATATCGAAAATTTTTAAATAAGTCCGATTGCGATAAAAATTGATATCACGAGCTGAAATGGCTCGAAAATCTTTTTCTGAGTTTTTTTAAAATTTTTTCAAAAATTGAAAAAATGCTTTTCCTCAAAAATTAATGCCGAGCAATCTAGGTCAAAACTATGCCAAATTTAATTGTTTTTTTTGCAGTTTGGCACAAATCGCTCCTCGTTCATCTTCACGACCAACGAATCCACCTCCGATTGGCGTCCTCCCACAAATCGAACTGCAAATAACACCGATTGGGCAACATTTGGGGATCCTTCAAAAGCCACGTCATCAAGCTCCAAACCCAACACCCAATGGGCGACATTTGGCGAGGAATGGATTGCTCCAATTCAGCTCTCCAAAAGCTCCGCCCCCGCACGCCCACCGCCCCCAAAACAGAGCTCAATCACGTCGCCAACCGCCGACATCGGCGACGTTTCGGAAATGTTTGGCACGGTGCCAAGCGCGCCGAAAGCGCCACAGCAGCAACCAAGTGGTGTCATTCATTCTGCGAGTGATTTTGAGATTGGACTGATTTCGGCCACGGAGGGAGCCAATAATGATGAGGATAAACGGTGTCGAATTGTGGAGGAGTTGATTAGCTCGGAATTGCAGTTTATCAGTGATATCAATAGTTATACGGAGGTAAGGTATTGACGGGGACTAGATTTGGGCTTCTAGGCCATCAGGC</canonical>
            <polymorphic>TTTTCAGCCTTACTTTTTGATTTTCTCACACAATTAGTTCCAAATTCGAACTTTACACTAAAAATTACCCTAGAAACCGTCAAAAAACGGGTAAAAACAACCGTGGCCGAACTTTCCAAATGGTGGCCTAGAAAAATCGAAAAACTCGGCCATCTCGAAATTTTTCAATTTTTCATAGTCTCTTGGGTAGTTTTTGATGGGAAACCCGAATTTTGTAAGCTCGATGCGAAAATCACCGGTTAACACTGGAAAATCAGGTTTTTCGAAAATTTCTAAAATTAAAAAAATATCGAAAATTTTTAAATAAGTCCGATTGCGATAAAAATTGATATCACGAGCTGAAATGGCTCGAAAATCTTTTTCTGAGTTTTTTTAAAATTTTTTCAAAAATTGAAAAAATGCTTTTCCTCAAAAATTAATGCCGAGCAATCTAGGTCAAAACTATGCCAAATTTAATTGTTTTTTTTGCAGTTTGGCACAAATCGCTCCTCGTTCATCTYCACGACCAACGAATCCACCTCCGATTGGCGTCCTCCCACAAATCGAACTGCAAATAACACCGATTGGGCAACATTTGGGGATCCTTCAAAAGCCACGTCATCAAGCTCCAAACCCAACACCCAATGGGCGACATTTGGCGAGGAATGGATTGCTCCAATTCAGCTCTCCAAAAGCTCCGCCCCCGCACGCCCACCGCCCCCAAAACAGAGCTCAATCACGTCGCCAACCGCCGACATCGGCGACGTTTCGGAAATGTTTGGCACGGTGCCAAGCGCGCCGAAAGCGCCACAGCAGCAACCAAGTGGTGTCATTCATTCTGCGAGTGATTTTGAGATTGGACTGATTTCGGCCACGGAGGGAGCCAATAATGATGAGGATAAACGGTGTCGAATTGTGGAGGAGTTGATTAGCTCGGAATTGCAGTTTATCAGTGATATCAATAGTTATACGGAGGTAAGGTATTGACGGGGACTAGATTTGGGCTTCTAGGCCATCAGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>499 179 168 154</canonical_bands>
                <polymorphic_bands>667 179 154</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGCAATCTAGGTCAAAACTATG</pcr_primer_p1>
		<pcr_primer_p2>GAGCTTTTGGAGAGCTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GAGCAATCTAGGTCAAAACTATGCCAAATTTAATTGTTTTTTTTGCAGTTTGGCACAAATCGCTCCTCGTTCATCTTCACGACCAACGAATCCACCTCCGATTGGCGTCCTCCCACAAATCGAACTGCAAATAACACCGATTGGGCAACATTTGGGGATCCTTCAAAAGCCACGTCATCAAGCTCCAAACCCAACACCCAATGGGCGACATTTGGCGAGGAATGGATTGCTCCAATTCAGCTCTCCAAAAGCTC</canonical_amplicon>
		<polymorphic_amplicon>GAGCAATCTAGGTCAAAACTATGCCAAATTTAATTGTTTTTTTTGCAGTTTGGCACAAATCGCTCCTCGTTCATCTYCACGACCAACGAATCCACCTCCGATTGGCGTCCTCCCACAAATCGAACTGCAAATAACACCGATTGGGCAACATTTGGGGATCCTTCAAAAGCCACGTCATCAAGCTCCAAACCCAACACCCAATGGGCGACATTTGGCGAGGAATGGATTGCTCCAATTCAGCTCTCCAAAAGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29075</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>313739</contig_pos>
        <strand></strand>
        <context>ATCCTTCAAA[A/T]GCCACGTCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATCGAACTGCAAATAACACCGATTGGGCAACATTTGGGGATCCTTCAAA</left_flank>
        <right_flank>GCCACGTCATCAAGCTCCAAACCCAACACCCAATGGGCGACATTTGGCGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAAACAACCGTGGCCGAACTTTCCAAATGGTGGCCTAGAAAAATCGAAAAACTCGGCCATCTCGAAATTTTTCAATTTTTCATAGTCTCTTGGGTAGTTTTTGATGGGAAACCCGAATTTTGTAAGCTCGATGCGAAAATCACCGGTTAACACTGGAAAATCAGGTTTTTCGAAAATTTCTAAAATTAAAAAAATATCGAAAATTTTTAAATAAGTCCGATTGCGATAAAAATTGATATCACGAGCTGAAATGGCTCGAAAATCTTTTTCTGAGTTTTTTTAAAATTTTTTCAAAAATTGAAAAAATGCTTTTCCTCAAAAATTAATGCCGAGCAATCTAGGTCAAAACTATGCCAAATTTAATTGTTTTTTTTGCAGTTTGGCACAAATCGCTCCTCGTTCATCTTCACGACCAACGAATCCACCTCCGATTGGCGTCCTCCCACAAATCGAACTGCAAATAACACCGATTGGGCAACATTTGGGGATCCTTCAAAAGCCACGTCATCAAGCTCCAAACCCAACACCCAATGGGCGACATTTGGCGAGGAATGGATTGCTCCAATTCAGCTCTCCAAAAGCTCCGCCCCCGCACGCCCACCGCCCCCAAAACAGAGCTCAATCACGTCGCCAACCGCCGACATCGGCGACGTTTCGGAAATGTTTGGCACGGTGCCAAGCGCGCCGAAAGCGCCACAGCAGCAACCAAGTGGTGTCATTCATTCTGCGAGTGATTTTGAGATTGGACTGATTTCGGCCACGGAGGGAGCCAATAATGATGAGGATAAACGGTGTCGAATTGTGGAGGAGTTGATTAGCTCGGAATTGCAGTTTATCAGTGATATCAATAGTTATACGGAGGTAAGGTATTGACGGGGACTAGATTTGGGCTTCTAGGCCATCAGGCTCGATGGCCTAGAATCAATTTCTATGCCACCAAAGCTTAGTTTTGGGCTTTTCGGCTATAAAACCTTGATGGCCGAAGTTTTGGGTTTCTA</canonical>
            <polymorphic>TAAAAACAACCGTGGCCGAACTTTCCAAATGGTGGCCTAGAAAAATCGAAAAACTCGGCCATCTCGAAATTTTTCAATTTTTCATAGTCTCTTGGGTAGTTTTTGATGGGAAACCCGAATTTTGTAAGCTCGATGCGAAAATCACCGGTTAACACTGGAAAATCAGGTTTTTCGAAAATTTCTAAAATTAAAAAAATATCGAAAATTTTTAAATAAGTCCGATTGCGATAAAAATTGATATCACGAGCTGAAATGGCTCGAAAATCTTTTTCTGAGTTTTTTTAAAATTTTTTCAAAAATTGAAAAAATGCTTTTCCTCAAAAATTAATGCCGAGCAATCTAGGTCAAAACTATGCCAAATTTAATTGTTTTTTTTGCAGTTTGGCACAAATCGCTCCTCGTTCATCTTCACGACCAACGAATCCACCTCCGATTGGCGTCCTCCCACAAATCGAACTGCAAATAACACCGATTGGGCAACATTTGGGGATCCTTCAAAWGCCACGTCATCAAGCTCCAAACCCAACACCCAATGGGCGACATTTGGCGAGGAATGGATTGCTCCAATTCAGCTCTCCAAAAGCTCCGCCCCCGCACGCCCACCGCCCCCAAAACAGAGCTCAATCACGTCGCCAACCGCCGACATCGGCGACGTTTCGGAAATGTTTGGCACGGTGCCAAGCGCGCCGAAAGCGCCACAGCAGCAACCAAGTGGTGTCATTCATTCTGCGAGTGATTTTGAGATTGGACTGATTTCGGCCACGGAGGGAGCCAATAATGATGAGGATAAACGGTGTCGAATTGTGGAGGAGTTGATTAGCTCGGAATTGCAGTTTATCAGTGATATCAATAGTTATACGGAGGTAAGGTATTGACGGGGACTAGATTTGGGCTTCTAGGCCATCAGGCTCGATGGCCTAGAATCAATTTCTATGCCACCAAAGCTTAGTTTTGGGCTTTTCGGCTATAAAACCTTGATGGCCGAAGTTTTGGGTTTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>245 140 119 72 70 58 49 36 28 23 20 19 17 15 13 12 12 11 9 8 8 8 8</canonical_bands>
                <polymorphic_bands>258 140 119 72 70 58 49 36 28 23 20 19 17 15 12 12 11 9 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGCAATCTAGGTCAAAACTATG</pcr_primer_p1>
		<pcr_primer_p2>GAGCTTTTGGAGAGCTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GAGCAATCTAGGTCAAAACTATGCCAAATTTAATTGTTTTTTTTGCAGTTTGGCACAAATCGCTCCTCGTTCATCTTCACGACCAACGAATCCACCTCCGATTGGCGTCCTCCCACAAATCGAACTGCAAATAACACCGATTGGGCAACATTTGGGGATCCTTCAAAAGCCACGTCATCAAGCTCCAAACCCAACACCCAATGGGCGACATTTGGCGAGGAATGGATTGCTCCAATTCAGCTCTCCAAAAGCTC</canonical_amplicon>
		<polymorphic_amplicon>GAGCAATCTAGGTCAAAACTATGCCAAATTTAATTGTTTTTTTTGCAGTTTGGCACAAATCGCTCCTCGTTCATCTTCACGACCAACGAATCCACCTCCGATTGGCGTCCTCCCACAAATCGAACTGCAAATAACACCGATTGGGCAACATTTGGGGATCCTTCAAAWGCCACGTCATCAAGCTCCAAACCCAACACCCAATGGGCGACATTTGGCGAGGAATGGATTGCTCCAATTCAGCTCTCCAAAAGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29076</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>313841</contig_pos>
        <strand></strand>
        <context>CCGCACGCCC[A/G]CCGCCCCCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATGGATTGCTCCAATTCAGCTCTCCAAAAGCTCCGCCCCCGCACGCCC</left_flank>
        <right_flank>CCGCCCCCAAAACAGAGCTCAATCACGTCGCCAACCGCCGACATCGGCGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGATGGGAAACCCGAATTTTGTAAGCTCGATGCGAAAATCACCGGTTAACACTGGAAAATCAGGTTTTTCGAAAATTTCTAAAATTAAAAAAATATCGAAAATTTTTAAATAAGTCCGATTGCGATAAAAATTGATATCACGAGCTGAAATGGCTCGAAAATCTTTTTCTGAGTTTTTTTAAAATTTTTTCAAAAATTGAAAAAATGCTTTTCCTCAAAAATTAATGCCGAGCAATCTAGGTCAAAACTATGCCAAATTTAATTGTTTTTTTTGCAGTTTGGCACAAATCGCTCCTCGTTCATCTTCACGACCAACGAATCCACCTCCGATTGGCGTCCTCCCACAAATCGAACTGCAAATAACACCGATTGGGCAACATTTGGGGATCCTTCAAAAGCCACGTCATCAAGCTCCAAACCCAACACCCAATGGGCGACATTTGGCGAGGAATGGATTGCTCCAATTCAGCTCTCCAAAAGCTCCGCCCCCGCACGCCCACCGCCCCCAAAACAGAGCTCAATCACGTCGCCAACCGCCGACATCGGCGACGTTTCGGAAATGTTTGGCACGGTGCCAAGCGCGCCGAAAGCGCCACAGCAGCAACCAAGTGGTGTCATTCATTCTGCGAGTGATTTTGAGATTGGACTGATTTCGGCCACGGAGGGAGCCAATAATGATGAGGATAAACGGTGTCGAATTGTGGAGGAGTTGATTAGCTCGGAATTGCAGTTTATCAGTGATATCAATAGTTATACGGAGGTAAGGTATTGACGGGGACTAGATTTGGGCTTCTAGGCCATCAGGCTCGATGGCCTAGAATCAATTTCTATGCCACCAAAGCTTAGTTTTGGGCTTTTCGGCTATAAAACCTTGATGGCCGAAGTTTTGGGTTTCTAGGCCATCAGGTTTAAAATAGTTTGATGGCCTAGAATTGGATCTCTAGGTCGTAATAGCTTATTGGCCGATTTTTGATATTCTAAACCACTAAGCGCCTCAGT</canonical>
            <polymorphic>TTGATGGGAAACCCGAATTTTGTAAGCTCGATGCGAAAATCACCGGTTAACACTGGAAAATCAGGTTTTTCGAAAATTTCTAAAATTAAAAAAATATCGAAAATTTTTAAATAAGTCCGATTGCGATAAAAATTGATATCACGAGCTGAAATGGCTCGAAAATCTTTTTCTGAGTTTTTTTAAAATTTTTTCAAAAATTGAAAAAATGCTTTTCCTCAAAAATTAATGCCGAGCAATCTAGGTCAAAACTATGCCAAATTTAATTGTTTTTTTTGCAGTTTGGCACAAATCGCTCCTCGTTCATCTTCACGACCAACGAATCCACCTCCGATTGGCGTCCTCCCACAAATCGAACTGCAAATAACACCGATTGGGCAACATTTGGGGATCCTTCAAAAGCCACGTCATCAAGCTCCAAACCCAACACCCAATGGGCGACATTTGGCGAGGAATGGATTGCTCCAATTCAGCTCTCCAAAAGCTCCGCCCCCGCACGCCCRCCGCCCCCAAAACAGAGCTCAATCACGTCGCCAACCGCCGACATCGGCGACGTTTCGGAAATGTTTGGCACGGTGCCAAGCGCGCCGAAAGCGCCACAGCAGCAACCAAGTGGTGTCATTCATTCTGCGAGTGATTTTGAGATTGGACTGATTTCGGCCACGGAGGGAGCCAATAATGATGAGGATAAACGGTGTCGAATTGTGGAGGAGTTGATTAGCTCGGAATTGCAGTTTATCAGTGATATCAATAGTTATACGGAGGTAAGGTATTGACGGGGACTAGATTTGGGCTTCTAGGCCATCAGGCTCGATGGCCTAGAATCAATTTCTATGCCACCAAAGCTTAGTTTTGGGCTTTTCGGCTATAAAACCTTGATGGCCGAAGTTTTGGGTTTCTAGGCCATCAGGTTTAAAATAGTTTGATGGCCTAGAATTGGATCTCTAGGTCGTAATAGCTTATTGGCCGATTTTTGATATTCTAAACCACTAAGCGCCTCAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>150 144 95 89 68 45 42 37 36 34 27 25 24 24 21 21 21 18 16 15 14 10 10 6 5 3</canonical_bands>
                <polymorphic_bands>150 144 95 89 68 45 42 37 36 34 31 27 24 24 21 21 21 18 16 15 14 10 10 5 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTGCAAATAACACCGATTG</pcr_primer_p1>
		<pcr_primer_p2>GCAGAATGAATGACACCACT</pcr_primer_p2>
		<pcr_amplicon_size>275</pcr_amplicon_size>
		<canonical_amplicon>ACTGCAAATAACACCGATTGGGCAACATTTGGGGATCCTTCAAAAGCCACGTCATCAAGCTCCAAACCCAACACCCAATGGGCGACATTTGGCGAGGAATGGATTGCTCCAATTCAGCTCTCCAAAAGCTCCGCCCCCGCACGCCCACCGCCCCCAAAACAGAGCTCAATCACGTCGCCAACCGCCGACATCGGCGACGTTTCGGAAATGTTTGGCACGGTGCCAAGCGCGCCGAAAGCGCCACAGCAGCAACCAAGTGGTGTCATTCATTCTGC</canonical_amplicon>
		<polymorphic_amplicon>ACTGCAAATAACACCGATTGGGCAACATTTGGGGATCCTTCAAAAGCCACGTCATCAAGCTCCAAACCCAACACCCAATGGGCGACATTTGGCGAGGAATGGATTGCTCCAATTCAGCTCTCCAAAAGCTCCGCCCCCGCACGCCCRCCGCCCCCAAAACAGAGCTCAATCACGTCGCCAACCGCCGACATCGGCGACGTTTCGGAAATGTTTGGCACGGTGCCAAGCGCGCCGAAAGCGCCACAGCAGCAACCAAGTGGTGTCATTCATTCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29077</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>336631</contig_pos>
        <strand>+</strand>
        <context>CTCCAGATGA[A/G]ATTCGCAGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCCACAATCTGGGGTTTCTTGGCAATTCTTCATGAGTGTCTCCAGATGA</left_flank>
        <right_flank>ATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAAT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTTTTTCACTATTTTAATGTTTCGAGATGATCATTTCACTTTTCGCAAGTCCAGGATATTGATCAGGATGTTGTTTCTGCTAGTTTTGCTGTGGTGTGCTGATCCTCGAACTGCCGACGTAGTCACTGGAAGGGGTTGGCGCTAATAGGCCTGCGTTGGATATTGCACTTGAGGAACGAGACACATCTTGGTTTGGTTTATAGGGATTTGGATATGATATCGATTAGTATTGGAGGCTCCCAGTGATAAAACACCGACGGCTGAATTTTCTAAAAATCCCAAAATTCCAACATAAACTAACATTTTTTCCACACAAGAATTCATTCAAAAAAATCTCACAACAATTTAAAAAAACAACAAAAAATATTCATAATGATTTCGTTCACCAGAGCTCACTATTCATTATCAACATCGATGACTTCCAACTTCAAGAAGTTCCTATAATTGTCCCACAATCTGGGGTTTCTTGGCAATTCTTCATGAGTGTCTCCAGATGAAATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCCCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGATGCTGCCACTCTTGAAGGATTTGATTGAGAACGTTCTCTACATCTTTCGTATGAACGCGTTTGATGATGAGAGTTGTTCCAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTGGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAAGCCTTCATGATCTCCTTAAGCTTCTCAAAGCCATTAGCAGTTGTGAATCTGGCGTCCACTTCTTTAGAAT</canonical>
            <polymorphic>CCTTTTTTCACTATTTTAATGTTTCGAGATGATCATTTCACTTTTCGCAAGTCCAGGATATTGATCAGGATGTTGTTTCTGCTAGTTTTGCTGTGGTGTGCTGATCCTCGAACTGCCGACGTAGTCACTGGAAGGGGTTGGCGCTAATAGGCCTGCGTTGGATATTGCACTTGAGGAACGAGACACATCTTGGTTTGGTTTATAGGGATTTGGATATGATATCGATTAGTATTGGAGGCTCCCAGTGATAAAACACCGACGGCTGAATTTTCTAAAAATCCCAAAATTCCAACATAAACTAACATTTTTTCCACACAAGAATTCATTCAAAAAAATCTCACAACAATTTAAAAAAACAACAAAAAATATTCATAATGATTTCGTTCACCAGAGCTCACTATTCATTATCAACATCGATGACTTCCAACTTCAAGAAGTTCCTATAATTGTCCCACAATCTGGGGTTTCTTGGCAATTCTTCATGAGTGTCTCCAGATGARATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCCCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGATGCTGCCACTCTTGAAGGATTTGATTGAGAACGTTCTCTACATCTTTCGTATGAACGCGTTTGATGATGAGAGTTGTTCCAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTGGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAAGCCTTCATGATCTCCTTAAGCTTCTCAAAGCCATTAGCAGTTGTGAATCTGGCGTCCACTTCTTTAGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>453 265 180 48 35 19</canonical_bands>
                <polymorphic_bands>453 265 228 35 19</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>288 265 139 100 48 35 29 26 26 25 19</canonical_bands>
                <polymorphic_bands>288 265 139 100 74 35 29 26 25 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTCATAATGATTTCGTTCACC</pcr_primer_p1>
		<pcr_primer_p2>ATCGTGAAAACAAGAATGAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TATTCATAATGATTTCGTTCACCAGAGCTCACTATTCATTATCAACATCGATGACTTCCAACTTCAAGAAGTTCCTATAATTGTCCCACAATCTGGGGTTTCTTGGCAATTCTTCATGAGTGTCTCCAGATGAAATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCCCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGAT</canonical_amplicon>
		<polymorphic_amplicon>TATTCATAATGATTTCGTTCACCAGAGCTCACTATTCATTATCAACATCGATGACTTCCAACTTCAAGAAGTTCCTATAATTGTCCCACAATCTGGGGTTTCTTGGCAATTCTTCATGAGTGTCTCCAGATGARATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCCCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29078</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>336685</contig_pos>
        <strand>+</strand>
        <context>TGAAAATTTT[C/T]CYTTAATGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTT</left_flank>
        <right_flank>CCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGATATTGATCAGGATGTTGTTTCTGCTAGTTTTGCTGTGGTGTGCTGATCCTCGAACTGCCGACGTAGTCACTGGAAGGGGTTGGCGCTAATAGGCCTGCGTTGGATATTGCACTTGAGGAACGAGACACATCTTGGTTTGGTTTATAGGGATTTGGATATGATATCGATTAGTATTGGAGGCTCCCAGTGATAAAACACCGACGGCTGAATTTTCTAAAAATCCCAAAATTCCAACATAAACTAACATTTTTTCCACACAAGAATTCATTCAAAAAAATCTCACAACAATTTAAAAAAACAACAAAAAATATTCATAATGATTTCGTTCACCAGAGCTCACTATTCATTATCAACATCGATGACTTCCAACTTCAAGAAGTTCCTATAATTGTCCCACAATCTGGGGTTTCTTGGCAATTCTTCATGAGTGTCTCCAGATGAAATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCCCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGATGCTGCCACTCTTGAAGGATTTGATTGAGAACGTTCTCTACATCTTTCGTATGAACGCGTTTGATGATGAGAGTTGTTCCAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTGGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAAGCCTTCATGATCTCCTTAAGCTTCTCAAAGCCATTAGCAGTTGTGAATCTGGCGTCCACTTCTTTAGAATGGAATTTCACAGCTTTTGGAAGTCTCAAAATATCGGCTCTCAACTGAAGATGTT</canonical>
            <polymorphic>AGGATATTGATCAGGATGTTGTTTCTGCTAGTTTTGCTGTGGTGTGCTGATCCTCGAACTGCCGACGTAGTCACTGGAAGGGGTTGGCGCTAATAGGCCTGCGTTGGATATTGCACTTGAGGAACGAGACACATCTTGGTTTGGTTTATAGGGATTTGGATATGATATCGATTAGTATTGGAGGCTCCCAGTGATAAAACACCGACGGCTGAATTTTCTAAAAATCCCAAAATTCCAACATAAACTAACATTTTTTCCACACAAGAATTCATTCAAAAAAATCTCACAACAATTTAAAAAAACAACAAAAAATATTCATAATGATTTCGTTCACCAGAGCTCACTATTCATTATCAACATCGATGACTTCCAACTTCAAGAAGTTCCTATAATTGTCCCACAATCTGGGGTTTCTTGGCAATTCTTCATGAGTGTCTCCAGATGAAATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTYCCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGATGCTGCCACTCTTGAAGGATTTGATTGAGAACGTTCTCTACATCTTTCGTATGAACGCGTTTGATGATGAGAGTTGTTCCAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTGGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAAGCCTTCATGATCTCCTTAAGCTTCTCAAAGCCATTAGCAGTTGTGAATCTGGCGTCCACTTCTTTAGAATGGAATTTCACAGCTTTTGGAAGTCTCAAAATATCGGCTCTCAACTGAAGATGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>505 269 226</canonical_bands>
                <polymorphic_bands>731 269</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTCATAATGATTTCGTTCACC</pcr_primer_p1>
		<pcr_primer_p2>ATCGTGAAAACAAGAATGAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TATTCATAATGATTTCGTTCACCAGAGCTCACTATTCATTATCAACATCGATGACTTCCAACTTCAAGAAGTTCCTATAATTGTCCCACAATCTGGGGTTTCTTGGCAATTCTTCATGAGTGTCTCCAGATGAAATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCCCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGAT</canonical_amplicon>
		<polymorphic_amplicon>TATTCATAATGATTTCGTTCACCAGAGCTCACTATTCATTATCAACATCGATGACTTCCAACTTCAAGAAGTTCCTATAATTGTCCCACAATCTGGGGTTTCTTGGCAATTCTTCATGAGTGTCTCCAGATGAAATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTYCCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29079</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>336687</contig_pos>
        <strand>+</strand>
        <context>AAAATTTTYC[C/T]TTAATGATCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCC</left_flank>
        <right_flank>TTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATATTGATCAGGATGTTGTTTCTGCTAGTTTTGCTGTGGTGTGCTGATCCTCGAACTGCCGACGTAGTCACTGGAAGGGGTTGGCGCTAATAGGCCTGCGTTGGATATTGCACTTGAGGAACGAGACACATCTTGGTTTGGTTTATAGGGATTTGGATATGATATCGATTAGTATTGGAGGCTCCCAGTGATAAAACACCGACGGCTGAATTTTCTAAAAATCCCAAAATTCCAACATAAACTAACATTTTTTCCACACAAGAATTCATTCAAAAAAATCTCACAACAATTTAAAAAAACAACAAAAAATATTCATAATGATTTCGTTCACCAGAGCTCACTATTCATTATCAACATCGATGACTTCCAACTTCAAGAAGTTCCTATAATTGTCCCACAATCTGGGGTTTCTTGGCAATTCTTCATGAGTGTCTCCAGATGAAATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCCCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGATGCTGCCACTCTTGAAGGATTTGATTGAGAACGTTCTCTACATCTTTCGTATGAACGCGTTTGATGATGAGAGTTGTTCCAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTGGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAAGCCTTCATGATCTCCTTAAGCTTCTCAAAGCCATTAGCAGTTGTGAATCTGGCGTCCACTTCTTTAGAATGGAATTTCACAGCTTTTGGAAGTCTCAAAATATCGGCTCTCAACTGAAGATGTTTC</canonical>
            <polymorphic>GATATTGATCAGGATGTTGTTTCTGCTAGTTTTGCTGTGGTGTGCTGATCCTCGAACTGCCGACGTAGTCACTGGAAGGGGTTGGCGCTAATAGGCCTGCGTTGGATATTGCACTTGAGGAACGAGACACATCTTGGTTTGGTTTATAGGGATTTGGATATGATATCGATTAGTATTGGAGGCTCCCAGTGATAAAACACCGACGGCTGAATTTTCTAAAAATCCCAAAATTCCAACATAAACTAACATTTTTTCCACACAAGAATTCATTCAAAAAAATCTCACAACAATTTAAAAAAACAACAAAAAATATTCATAATGATTTCGTTCACCAGAGCTCACTATTCATTATCAACATCGATGACTTCCAACTTCAAGAAGTTCCTATAATTGTCCCACAATCTGGGGTTTCTTGGCAATTCTTCATGAGTGTCTCCAGATGAAATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCCYTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGATGCTGCCACTCTTGAAGGATTTGATTGAGAACGTTCTCTACATCTTTCGTATGAACGCGTTTGATGATGAGAGTTGTTCCAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTGGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAAGCCTTCATGATCTCCTTAAGCTTCTCAAAGCCATTAGCAGTTGTGAATCTGGCGTCCACTTCTTTAGAATGGAATTTCACAGCTTTTGGAAGTCTCAAAATATCGGCTCTCAACTGAAGATGTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTCATAATGATTTCGTTCACC</pcr_primer_p1>
		<pcr_primer_p2>ATCGTGAAAACAAGAATGAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TATTCATAATGATTTCGTTCACCAGAGCTCACTATTCATTATCAACATCGATGACTTCCAACTTCAAGAAGTTCCTATAATTGTCCCACAATCTGGGGTTTCTTGGCAATTCTTCATGAGTGTCTCCAGATGAAATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCCCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGAT</canonical_amplicon>
		<polymorphic_amplicon>TATTCATAATGATTTCGTTCACCAGAGCTCACTATTCATTATCAACATCGATGACTTCCAACTTCAAGAAGTTCCTATAATTGTCCCACAATCTGGGGTTTCTTGGCAATTCTTCATGAGTGTCTCCAGATGAAATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCCYTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29080</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>336770</contig_pos>
        <strand>+</strand>
        <context>TTTGATTGAG[A/T]AYGTTCTCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TACTCATTCTTGTTTTCACGATGCTGCCACTCTTGAAGGATTTGATTGAG</left_flank>
        <right_flank>ACGTTCTCTACATCTTTCGTATGAACGCGTTTGATGATGAGAGTTGTTCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCGCTAATAGGCCTGCGTTGGATATTGCACTTGAGGAACGAGACACATCTTGGTTTGGTTTATAGGGATTTGGATATGATATCGATTAGTATTGGAGGCTCCCAGTGATAAAACACCGACGGCTGAATTTTCTAAAAATCCCAAAATTCCAACATAAACTAACATTTTTTCCACACAAGAATTCATTCAAAAAAATCTCACAACAATTTAAAAAAACAACAAAAAATATTCATAATGATTTCGTTCACCAGAGCTCACTATTCATTATCAACATCGATGACTTCCAACTTCAAGAAGTTCCTATAATTGTCCCACAATCTGGGGTTTCTTGGCAATTCTTCATGAGTGTCTCCAGATGAAATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCCCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGATGCTGCCACTCTTGAAGGATTTGATTGAGAACGTTCTCTACATCTTTCGTATGAACGCGTTTGATGATGAGAGTTGTTCCAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTGGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAAGCCTTCATGATCTCCTTAAGCTTCTCAAAGCCATTAGCAGTTGTGAATCTGGCGTCCACTTCTTTAGAATGGAATTTCACAGCTTTTGGAAGTCTCAAAATATCGGCTCTCAACTGAAGATGTTTCACTCGAATTGGTTCACTTCTTCCACCGAAAAGCAGACTGTTGATGTGAATATATGCTTCAATAAGTGACTTGGTATATTCGAC</canonical>
            <polymorphic>GGCGCTAATAGGCCTGCGTTGGATATTGCACTTGAGGAACGAGACACATCTTGGTTTGGTTTATAGGGATTTGGATATGATATCGATTAGTATTGGAGGCTCCCAGTGATAAAACACCGACGGCTGAATTTTCTAAAAATCCCAAAATTCCAACATAAACTAACATTTTTTCCACACAAGAATTCATTCAAAAAAATCTCACAACAATTTAAAAAAACAACAAAAAATATTCATAATGATTTCGTTCACCAGAGCTCACTATTCATTATCAACATCGATGACTTCCAACTTCAAGAAGTTCCTATAATTGTCCCACAATCTGGGGTTTCTTGGCAATTCTTCATGAGTGTCTCCAGATGAAATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCCCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGATGCTGCCACTCTTGAAGGATTTGATTGAGWACGTTCTCTACATCTTTCGTATGAACGCGTTTGATGATGAGAGTTGTTCCAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTGGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAAGCCTTCATGATCTCCTTAAGCTTCTCAAAGCCATTAGCAGTTGTGAATCTGGCGTCCACTTCTTTAGAATGGAATTTCACAGCTTTTGGAAGTCTCAAAATATCGGCTCTCAACTGAAGATGTTTCACTCGAATTGGTTCACTTCTTCCACCGAAAAGCAGACTGTTGATGTGAATATATGCTTCAATAAGTGACTTGGTATATTCGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAATTCTTCATGAGTGTCTC</pcr_primer_p1>
		<pcr_primer_p2>AGAAAATTGGAGAAGAACTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCAATTCTTCATGAGTGTCTCCAGATGAAATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCCCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGATGCTGCCACTCTTGAAGGATTTGATTGAGAACGTTCTCTACATCTTTCGTATGAACGCGTTTGATGATGAGAGTTGTTCCAACTTTTCGTTGAGTTCTTCTCCAATTTTCT</canonical_amplicon>
		<polymorphic_amplicon>GCAATTCTTCATGAGTGTCTCCAGATGAAATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCCCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGATGCTGCCACTCTTGAAGGATTTGATTGAGWACGTTCTCTACATCTTTCGTATGAACGCGTTTGATGATGAGAGTTGTTCCAACTTTTCGTTGAGTTCTTCTCCAATTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29081</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>336772</contig_pos>
        <strand>+</strand>
        <context>TGATTGAGWA[C/T]GTTCTCTACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCATTCTTGTTTTCACGATGCTGCCACTCTTGAAGGATTTGATTGAGAA</left_flank>
        <right_flank>GTTCTCTACATCTTTCGTATGAACGCGTTTGATGATGAGAGTTGTTCCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCTAATAGGCCTGCGTTGGATATTGCACTTGAGGAACGAGACACATCTTGGTTTGGTTTATAGGGATTTGGATATGATATCGATTAGTATTGGAGGCTCCCAGTGATAAAACACCGACGGCTGAATTTTCTAAAAATCCCAAAATTCCAACATAAACTAACATTTTTTCCACACAAGAATTCATTCAAAAAAATCTCACAACAATTTAAAAAAACAACAAAAAATATTCATAATGATTTCGTTCACCAGAGCTCACTATTCATTATCAACATCGATGACTTCCAACTTCAAGAAGTTCCTATAATTGTCCCACAATCTGGGGTTTCTTGGCAATTCTTCATGAGTGTCTCCAGATGAAATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCCCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGATGCTGCCACTCTTGAAGGATTTGATTGAGAACGTTCTCTACATCTTTCGTATGAACGCGTTTGATGATGAGAGTTGTTCCAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTGGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAAGCCTTCATGATCTCCTTAAGCTTCTCAAAGCCATTAGCAGTTGTGAATCTGGCGTCCACTTCTTTAGAATGGAATTTCACAGCTTTTGGAAGTCTCAAAATATCGGCTCTCAACTGAAGATGTTTCACTCGAATTGGTTCACTTCTTCCACCGAAAAGCAGACTGTTGATGTGAATATATGCTTCAATAAGTGACTTGGTATATTCGACTC</canonical>
            <polymorphic>CGCTAATAGGCCTGCGTTGGATATTGCACTTGAGGAACGAGACACATCTTGGTTTGGTTTATAGGGATTTGGATATGATATCGATTAGTATTGGAGGCTCCCAGTGATAAAACACCGACGGCTGAATTTTCTAAAAATCCCAAAATTCCAACATAAACTAACATTTTTTCCACACAAGAATTCATTCAAAAAAATCTCACAACAATTTAAAAAAACAACAAAAAATATTCATAATGATTTCGTTCACCAGAGCTCACTATTCATTATCAACATCGATGACTTCCAACTTCAAGAAGTTCCTATAATTGTCCCACAATCTGGGGTTTCTTGGCAATTCTTCATGAGTGTCTCCAGATGAAATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCCCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGATGCTGCCACTCTTGAAGGATTTGATTGAGAAYGTTCTCTACATCTTTCGTATGAACGCGTTTGATGATGAGAGTTGTTCCAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTGGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAAGCCTTCATGATCTCCTTAAGCTTCTCAAAGCCATTAGCAGTTGTGAATCTGGCGTCCACTTCTTTAGAATGGAATTTCACAGCTTTTGGAAGTCTCAAAATATCGGCTCTCAACTGAAGATGTTTCACTCGAATTGGTTCACTTCTTCCACCGAAAAGCAGACTGTTGATGTGAATATATGCTTCAATAAGTGACTTGGTATATTCGACTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>499 269 152 80</canonical_bands>
                <polymorphic_bands>651 269 80</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAATTCTTCATGAGTGTCTC</pcr_primer_p1>
		<pcr_primer_p2>AGAAAATTGGAGAAGAACTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCAATTCTTCATGAGTGTCTCCAGATGAAATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCCCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGATGCTGCCACTCTTGAAGGATTTGATTGAGAACGTTCTCTACATCTTTCGTATGAACGCGTTTGATGATGAGAGTTGTTCCAACTTTTCGTTGAGTTCTTCTCCAATTTTCT</canonical_amplicon>
		<polymorphic_amplicon>GCAATTCTTCATGAGTGTCTCCAGATGAAATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCCCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGATGCTGCCACTCTTGAAGGATTTGATTGAGAAYGTTCTCTACATCTTTCGTATGAACGCGTTTGATGATGAGAGTTGTTCCAACTTTTCGTTGAGTTCTTCTCCAATTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29082</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>336896</contig_pos>
        <strand>+</strand>
        <context>ATTGAACTGT[A/G]ATGTTTTCRT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGT</left_flank>
        <right_flank>ATGTTTTCGTGGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTCTAAAAATCCCAAAATTCCAACATAAACTAACATTTTTTCCACACAAGAATTCATTCAAAAAAATCTCACAACAATTTAAAAAAACAACAAAAAATATTCATAATGATTTCGTTCACCAGAGCTCACTATTCATTATCAACATCGATGACTTCCAACTTCAAGAAGTTCCTATAATTGTCCCACAATCTGGGGTTTCTTGGCAATTCTTCATGAGTGTCTCCAGATGAAATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCCCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGATGCTGCCACTCTTGAAGGATTTGATTGAGAACGTTCTCTACATCTTTCGTATGAACGCGTTTGATGATGAGAGTTGTTCCAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTGGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAAGCCTTCATGATCTCCTTAAGCTTCTCAAAGCCATTAGCAGTTGTGAATCTGGCGTCCACTTCTTTAGAATGGAATTTCACAGCTTTTGGAAGTCTCAAAATATCGGCTCTCAACTGAAGATGTTTCACTCGAATTGGTTCACTTCTTCCACCGAAAAGCAGACTGTTGATGTGAATATATGCTTCAATAAGTGACTTGGTATATTCGACTCTTTCAATATACTCTTCATTTTGATATTTAACGGTAAACTGAAGAAAAGGTTGATGATCTCCAAAAATCGGATCATCAGCACGCTGTCCTTCTCGAAGAGGTTGAAGTTGAACGTCTCCAGGATA</canonical>
            <polymorphic>AATTTTCTAAAAATCCCAAAATTCCAACATAAACTAACATTTTTTCCACACAAGAATTCATTCAAAAAAATCTCACAACAATTTAAAAAAACAACAAAAAATATTCATAATGATTTCGTTCACCAGAGCTCACTATTCATTATCAACATCGATGACTTCCAACTTCAAGAAGTTCCTATAATTGTCCCACAATCTGGGGTTTCTTGGCAATTCTTCATGAGTGTCTCCAGATGAAATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCCCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGATGCTGCCACTCTTGAAGGATTTGATTGAGAACGTTCTCTACATCTTTCGTATGAACGCGTTTGATGATGAGAGTTGTTCCAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTRATGTTTTCGTGGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAAGCCTTCATGATCTCCTTAAGCTTCTCAAAGCCATTAGCAGTTGTGAATCTGGCGTCCACTTCTTTAGAATGGAATTTCACAGCTTTTGGAAGTCTCAAAATATCGGCTCTCAACTGAAGATGTTTCACTCGAATTGGTTCACTTCTTCCACCGAAAAGCAGACTGTTGATGTGAATATATGCTTCAATAAGTGACTTGGTATATTCGACTCTTTCAATATACTCTTCATTTTGATATTTAACGGTAAACTGAAGAAAAGGTTGATGATCTCCAAAAATCGGATCATCAGCACGCTGTCCTTCTCGAAGAGGTTGAAGTTGAACGTCTCCAGGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACTTTTCGTTGAGTTCTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTCTAGTTTCCCACTCAATCTCT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTGGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAA</canonical_amplicon>
		<polymorphic_amplicon>CAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTRATGTTTTCGTGGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29083</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>336905</contig_pos>
        <strand>+</strand>
        <context>TRATGTTTTC[A/G]TKKGGAAGTY</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTC</left_flank>
        <right_flank>TGGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATCCCAAAATTCCAACATAAACTAACATTTTTTCCACACAAGAATTCATTCAAAAAAATCTCACAACAATTTAAAAAAACAACAAAAAATATTCATAATGATTTCGTTCACCAGAGCTCACTATTCATTATCAACATCGATGACTTCCAACTTCAAGAAGTTCCTATAATTGTCCCACAATCTGGGGTTTCTTGGCAATTCTTCATGAGTGTCTCCAGATGAAATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCCCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGATGCTGCCACTCTTGAAGGATTTGATTGAGAACGTTCTCTACATCTTTCGTATGAACGCGTTTGATGATGAGAGTTGTTCCAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTGGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAAGCCTTCATGATCTCCTTAAGCTTCTCAAAGCCATTAGCAGTTGTGAATCTGGCGTCCACTTCTTTAGAATGGAATTTCACAGCTTTTGGAAGTCTCAAAATATCGGCTCTCAACTGAAGATGTTTCACTCGAATTGGTTCACTTCTTCCACCGAAAAGCAGACTGTTGATGTGAATATATGCTTCAATAAGTGACTTGGTATATTCGACTCTTTCAATATACTCTTCATTTTGATATTTAACGGTAAACTGAAGAAAAGGTTGATGATCTCCAAAAATCGGATCATCAGCACGCTGTCCTTCTCGAAGAGGTTGAAGTTGAACGTCTCCAGGATACAAATCTCT</canonical>
            <polymorphic>AAAATCCCAAAATTCCAACATAAACTAACATTTTTTCCACACAAGAATTCATTCAAAAAAATCTCACAACAATTTAAAAAAACAACAAAAAATATTCATAATGATTTCGTTCACCAGAGCTCACTATTCATTATCAACATCGATGACTTCCAACTTCAAGAAGTTCCTATAATTGTCCCACAATCTGGGGTTTCTTGGCAATTCTTCATGAGTGTCTCCAGATGAAATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCCCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGATGCTGCCACTCTTGAAGGATTTGATTGAGAACGTTCTCTACATCTTTCGTATGAACGCGTTTGATGATGAGAGTTGTTCCAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCRTGGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAAGCCTTCATGATCTCCTTAAGCTTCTCAAAGCCATTAGCAGTTGTGAATCTGGCGTCCACTTCTTTAGAATGGAATTTCACAGCTTTTGGAAGTCTCAAAATATCGGCTCTCAACTGAAGATGTTTCACTCGAATTGGTTCACTTCTTCCACCGAAAAGCAGACTGTTGATGTGAATATATGCTTCAATAAGTGACTTGGTATATTCGACTCTTTCAATATACTCTTCATTTTGATATTTAACGGTAAACTGAAGAAAAGGTTGATGATCTCCAAAAATCGGATCATCAGCACGCTGTCCTTCTCGAAGAGGTTGAAGTTGAACGTCTCCAGGATACAAATCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>118 106 98 73 57 56 53 53 48 47 47 39 34 25 23 21 20 14 13 13 11 10 10 9 2</canonical_bands>
                <polymorphic_bands>126 118 106 98 57 56 53 48 47 47 39 34 25 23 21 20 14 13 13 11 10 10 9 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACTTTTCGTTGAGTTCTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTCTAGTTTCCCACTCAATCTCT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTGGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAA</canonical_amplicon>
		<polymorphic_amplicon>CAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCRTGGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29084</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>336907</contig_pos>
        <strand>+</strand>
        <context>ATGTTTTCRT[G/T]KGGAAGTYCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGT</left_flank>
        <right_flank>GGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCCCAAAATTCCAACATAAACTAACATTTTTTCCACACAAGAATTCATTCAAAAAAATCTCACAACAATTTAAAAAAACAACAAAAAATATTCATAATGATTTCGTTCACCAGAGCTCACTATTCATTATCAACATCGATGACTTCCAACTTCAAGAAGTTCCTATAATTGTCCCACAATCTGGGGTTTCTTGGCAATTCTTCATGAGTGTCTCCAGATGAAATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCCCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGATGCTGCCACTCTTGAAGGATTTGATTGAGAACGTTCTCTACATCTTTCGTATGAACGCGTTTGATGATGAGAGTTGTTCCAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTGGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAAGCCTTCATGATCTCCTTAAGCTTCTCAAAGCCATTAGCAGTTGTGAATCTGGCGTCCACTTCTTTAGAATGGAATTTCACAGCTTTTGGAAGTCTCAAAATATCGGCTCTCAACTGAAGATGTTTCACTCGAATTGGTTCACTTCTTCCACCGAAAAGCAGACTGTTGATGTGAATATATGCTTCAATAAGTGACTTGGTATATTCGACTCTTTCAATATACTCTTCATTTTGATATTTAACGGTAAACTGAAGAAAAGGTTGATGATCTCCAAAAATCGGATCATCAGCACGCTGTCCTTCTCGAAGAGGTTGAAGTTGAACGTCTCCAGGATACAAATCTCTCA</canonical>
            <polymorphic>AATCCCAAAATTCCAACATAAACTAACATTTTTTCCACACAAGAATTCATTCAAAAAAATCTCACAACAATTTAAAAAAACAACAAAAAATATTCATAATGATTTCGTTCACCAGAGCTCACTATTCATTATCAACATCGATGACTTCCAACTTCAAGAAGTTCCTATAATTGTCCCACAATCTGGGGTTTCTTGGCAATTCTTCATGAGTGTCTCCAGATGAAATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCCCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGATGCTGCCACTCTTGAAGGATTTGATTGAGAACGTTCTCTACATCTTTCGTATGAACGCGTTTGATGATGAGAGTTGTTCCAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTKGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAAGCCTTCATGATCTCCTTAAGCTTCTCAAAGCCATTAGCAGTTGTGAATCTGGCGTCCACTTCTTTAGAATGGAATTTCACAGCTTTTGGAAGTCTCAAAATATCGGCTCTCAACTGAAGATGTTTCACTCGAATTGGTTCACTTCTTCCACCGAAAAGCAGACTGTTGATGTGAATATATGCTTCAATAAGTGACTTGGTATATTCGACTCTTTCAATATACTCTTCATTTTGATATTTAACGGTAAACTGAAGAAAAGGTTGATGATCTCCAAAAATCGGATCATCAGCACGCTGTCCTTCTCGAAGAGGTTGAAGTTGAACGTCTCCAGGATACAAATCTCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>118 106 98 73 57 56 55 53 48 47 47 37 34 25 23 21 20 14 13 13 11 10 10 9 2</canonical_bands>
                <polymorphic_bands>126 118 106 98 57 56 55 48 47 47 37 34 25 23 21 20 14 13 13 11 10 10 9 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACTTTTCGTTGAGTTCTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTCTAGTTTCCCACTCAATCTCT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTGGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAA</canonical_amplicon>
		<polymorphic_amplicon>CAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTKGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29085</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>336908</contig_pos>
        <strand>+</strand>
        <context>TGTTTTCRTK[G/T]GGAAGTYCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTG</left_flank>
        <right_flank>GGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCCAAAATTCCAACATAAACTAACATTTTTTCCACACAAGAATTCATTCAAAAAAATCTCACAACAATTTAAAAAAACAACAAAAAATATTCATAATGATTTCGTTCACCAGAGCTCACTATTCATTATCAACATCGATGACTTCCAACTTCAAGAAGTTCCTATAATTGTCCCACAATCTGGGGTTTCTTGGCAATTCTTCATGAGTGTCTCCAGATGAAATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCCCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGATGCTGCCACTCTTGAAGGATTTGATTGAGAACGTTCTCTACATCTTTCGTATGAACGCGTTTGATGATGAGAGTTGTTCCAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTGGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAAGCCTTCATGATCTCCTTAAGCTTCTCAAAGCCATTAGCAGTTGTGAATCTGGCGTCCACTTCTTTAGAATGGAATTTCACAGCTTTTGGAAGTCTCAAAATATCGGCTCTCAACTGAAGATGTTTCACTCGAATTGGTTCACTTCTTCCACCGAAAAGCAGACTGTTGATGTGAATATATGCTTCAATAAGTGACTTGGTATATTCGACTCTTTCAATATACTCTTCATTTTGATATTTAACGGTAAACTGAAGAAAAGGTTGATGATCTCCAAAAATCGGATCATCAGCACGCTGTCCTTCTCGAAGAGGTTGAAGTTGAACGTCTCCAGGATACAAATCTCTCAG</canonical>
            <polymorphic>ATCCCAAAATTCCAACATAAACTAACATTTTTTCCACACAAGAATTCATTCAAAAAAATCTCACAACAATTTAAAAAAACAACAAAAAATATTCATAATGATTTCGTTCACCAGAGCTCACTATTCATTATCAACATCGATGACTTCCAACTTCAAGAAGTTCCTATAATTGTCCCACAATCTGGGGTTTCTTGGCAATTCTTCATGAGTGTCTCCAGATGAAATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCCCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGATGCTGCCACTCTTGAAGGATTTGATTGAGAACGTTCTCTACATCTTTCGTATGAACGCGTTTGATGATGAGAGTTGTTCCAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTGKGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAAGCCTTCATGATCTCCTTAAGCTTCTCAAAGCCATTAGCAGTTGTGAATCTGGCGTCCACTTCTTTAGAATGGAATTTCACAGCTTTTGGAAGTCTCAAAATATCGGCTCTCAACTGAAGATGTTTCACTCGAATTGGTTCACTTCTTCCACCGAAAAGCAGACTGTTGATGTGAATATATGCTTCAATAAGTGACTTGGTATATTCGACTCTTTCAATATACTCTTCATTTTGATATTTAACGGTAAACTGAAGAAAAGGTTGATGATCTCCAAAAATCGGATCATCAGCACGCTGTCCTTCTCGAAGAGGTTGAAGTTGAACGTCTCCAGGATACAAATCTCTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACTTTTCGTTGAGTTCTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTCTAGTTTCCCACTCAATCTCT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTGGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAA</canonical_amplicon>
		<polymorphic_amplicon>CAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTGKGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29086</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>336915</contig_pos>
        <strand>+</strand>
        <context>RTKKGGAAGT[C/T]CCAAGAGACG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTGGGGAAGT</left_flank>
        <right_flank>CCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCCAACATAAACTAACATTTTTTCCACACAAGAATTCATTCAAAAAAATCTCACAACAATTTAAAAAAACAACAAAAAATATTCATAATGATTTCGTTCACCAGAGCTCACTATTCATTATCAACATCGATGACTTCCAACTTCAAGAAGTTCCTATAATTGTCCCACAATCTGGGGTTTCTTGGCAATTCTTCATGAGTGTCTCCAGATGAAATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCCCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGATGCTGCCACTCTTGAAGGATTTGATTGAGAACGTTCTCTACATCTTTCGTATGAACGCGTTTGATGATGAGAGTTGTTCCAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTGGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAAGCCTTCATGATCTCCTTAAGCTTCTCAAAGCCATTAGCAGTTGTGAATCTGGCGTCCACTTCTTTAGAATGGAATTTCACAGCTTTTGGAAGTCTCAAAATATCGGCTCTCAACTGAAGATGTTTCACTCGAATTGGTTCACTTCTTCCACCGAAAAGCAGACTGTTGATGTGAATATATGCTTCAATAAGTGACTTGGTATATTCGACTCTTTCAATATACTCTTCATTTTGATATTTAACGGTAAACTGAAGAAAAGGTTGATGATCTCCAAAAATCGGATCATCAGCACGCTGTCCTTCTCGAAGAGGTTGAAGTTGAACGTCTCCAGGATACAAATCTCTCAGTTTCAAC</canonical>
            <polymorphic>AATTCCAACATAAACTAACATTTTTTCCACACAAGAATTCATTCAAAAAAATCTCACAACAATTTAAAAAAACAACAAAAAATATTCATAATGATTTCGTTCACCAGAGCTCACTATTCATTATCAACATCGATGACTTCCAACTTCAAGAAGTTCCTATAATTGTCCCACAATCTGGGGTTTCTTGGCAATTCTTCATGAGTGTCTCCAGATGAAATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCCCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGATGCTGCCACTCTTGAAGGATTTGATTGAGAACGTTCTCTACATCTTTCGTATGAACGCGTTTGATGATGAGAGTTGTTCCAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTGGGGAAGTYCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAAGCCTTCATGATCTCCTTAAGCTTCTCAAAGCCATTAGCAGTTGTGAATCTGGCGTCCACTTCTTTAGAATGGAATTTCACAGCTTTTGGAAGTCTCAAAATATCGGCTCTCAACTGAAGATGTTTCACTCGAATTGGTTCACTTCTTCCACCGAAAAGCAGACTGTTGATGTGAATATATGCTTCAATAAGTGACTTGGTATATTCGACTCTTTCAATATACTCTTCATTTTGATATTTAACGGTAAACTGAAGAAAAGGTTGATGATCTCCAAAAATCGGATCATCAGCACGCTGTCCTTCTCGAAGAGGTTGAAGTTGAACGTCTCCAGGATACAAATCTCTCAGTTTCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACTTTTCGTTGAGTTCTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTCTAGTTTCCCACTCAATCTCT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTGGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAA</canonical_amplicon>
		<polymorphic_amplicon>CAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTGGGGAAGTYCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29087</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>336961</contig_pos>
        <strand>+</strand>
        <context>TCCTCGTTTC[C/T]GATAAAAACG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTC</left_flank>
        <right_flank>GATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACC</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATCTCACAACAATTTAAAAAAACAACAAAAAATATTCATAATGATTTCGTTCACCAGAGCTCACTATTCATTATCAACATCGATGACTTCCAACTTCAAGAAGTTCCTATAATTGTCCCACAATCTGGGGTTTCTTGGCAATTCTTCATGAGTGTCTCCAGATGAAATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCCCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGATGCTGCCACTCTTGAAGGATTTGATTGAGAACGTTCTCTACATCTTTCGTATGAACGCGTTTGATGATGAGAGTTGTTCCAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTGGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAAGCCTTCATGATCTCCTTAAGCTTCTCAAAGCCATTAGCAGTTGTGAATCTGGCGTCCACTTCTTTAGAATGGAATTTCACAGCTTTTGGAAGTCTCAAAATATCGGCTCTCAACTGAAGATGTTTCACTCGAATTGGTTCACTTCTTCCACCGAAAAGCAGACTGTTGATGTGAATATATGCTTCAATAAGTGACTTGGTATATTCGACTCTTTCAATATACTCTTCATTTTGATATTTAACGGTAAACTGAAGAAAAGGTTGATGATCTCCAAAAATCGGATCATCAGCACGCTGTCCTTCTCGAAGAGGTTGAAGTTGAACGTCTCCAGGATACAAATCTCTCAGTTTCAACCAATCACGTCTTCCTACCATGTCGATGTCACAGTTTAGACCTCCAC</canonical>
            <polymorphic>AAAAATCTCACAACAATTTAAAAAAACAACAAAAAATATTCATAATGATTTCGTTCACCAGAGCTCACTATTCATTATCAACATCGATGACTTCCAACTTCAAGAAGTTCCTATAATTGTCCCACAATCTGGGGTTTCTTGGCAATTCTTCATGAGTGTCTCCAGATGAAATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCCCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGATGCTGCCACTCTTGAAGGATTTGATTGAGAACGTTCTCTACATCTTTCGTATGAACGCGTTTGATGATGAGAGTTGTTCCAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTGGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCYGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAAGCCTTCATGATCTCCTTAAGCTTCTCAAAGCCATTAGCAGTTGTGAATCTGGCGTCCACTTCTTTAGAATGGAATTTCACAGCTTTTGGAAGTCTCAAAATATCGGCTCTCAACTGAAGATGTTTCACTCGAATTGGTTCACTTCTTCCACCGAAAAGCAGACTGTTGATGTGAATATATGCTTCAATAAGTGACTTGGTATATTCGACTCTTTCAATATACTCTTCATTTTGATATTTAACGGTAAACTGAAGAAAAGGTTGATGATCTCCAAAAATCGGATCATCAGCACGCTGTCCTTCTCGAAGAGGTTGAAGTTGAACGTCTCCAGGATACAAATCTCTCAGTTTCAACCAATCACGTCTTCCTACCATGTCGATGTCACAGTTTAGACCTCCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACTTTTCGTTGAGTTCTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTCTAGTTTCCCACTCAATCTCT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTGGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAA</canonical_amplicon>
		<polymorphic_amplicon>CAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTGGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCYGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29088</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>337062</contig_pos>
        <strand></strand>
        <context>GAAACTAGAA[G/T]CCTTCATGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAA</left_flank>
        <right_flank>CCTTCATGATCTCCTTAAGCTTCTCAAAGCCATTAGCAGTTGTGAATCTG</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAAGTTCCTATAATTGTCCCACAATCTGGGGTTTCTTGGCAATTCTTCATGAGTGTCTCCAGATGAAATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCCCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGATGCTGCCACTCTTGAAGGATTTGATTGAGAACGTTCTCTACATCTTTCGTATGAACGCGTTTGATGATGAGAGTTGTTCCAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTGGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAAGCCTTCATGATCTCCTTAAGCTTCTCAAAGCCATTAGCAGTTGTGAATCTGGCGTCCACTTCTTTAGAATGGAATTTCACAGCTTTTGGAAGTCTCAAAATATCGGCTCTCAACTGAAGATGTTTCACTCGAATTGGTTCACTTCTTCCACCGAAAAGCAGACTGTTGATGTGAATATATGCTTCAATAAGTGACTTGGTATATTCGACTCTTTCAATATACTCTTCATTTTGATATTTAACGGTAAACTGAAGAAAAGGTTGATGATCTCCAAAAATCGGATCATCAGCACGCTGTCCTTCTCGAAGAGGTTGAAGTTGAACGTCTCCAGGATACAAATCTCTCAGTTTCAACCAATCACGTCTTCCTACCATGTCGATGTCACAGTTTAGACCTCCACTTCTATTGAAATTTGCAATGTGTTCGGTAATCCGATTTTTGTTAGCCATATGAATATGAATTCCAACTTTGTAATCGACTTCATCAATTGTTGTTTCATTT</canonical>
            <polymorphic>AAGAAGTTCCTATAATTGTCCCACAATCTGGGGTTTCTTGGCAATTCTTCATGAGTGTCTCCAGATGAAATTCGCAGCTTCTTATCCTGATAGAGATGGACGATGAAGTCTCTGAAAATTTTCCCTTAATGATCTCTACCATAATTTATTCAAATCTTACTCATTCTTGTTTTCACGATGCTGCCACTCTTGAAGGATTTGATTGAGAACGTTCTCTACATCTTTCGTATGAACGCGTTTGATGATGAGAGTTGTTCCAACTTTTCGTTGAGTTCTTCTCCAATTTTCTGTGATCGTCTGGAAGGTTCTCCAAGACAGACGAGATTGAACTGTAATGTTTTCGTGGGGAAGTTCCAAGAGACGTCGGAAAAGTTCAGGCTGATTGTTCTCCTCGTTTCTGATAAAAACGCAACGAGCACTTCGGAACACTGGATGCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAAKCCTTCATGATCTCCTTAAGCTTCTCAAAGCCATTAGCAGTTGTGAATCTGGCGTCCACTTCTTTAGAATGGAATTTCACAGCTTTTGGAAGTCTCAAAATATCGGCTCTCAACTGAAGATGTTTCACTCGAATTGGTTCACTTCTTCCACCGAAAAGCAGACTGTTGATGTGAATATATGCTTCAATAAGTGACTTGGTATATTCGACTCTTTCAATATACTCTTCATTTTGATATTTAACGGTAAACTGAAGAAAAGGTTGATGATCTCCAAAAATCGGATCATCAGCACGCTGTCCTTCTCGAAGAGGTTGAAGTTGAACGTCTCCAGGATACAAATCTCTCAGTTTCAACCAATCACGTCTTCCTACCATGTCGATGTCACAGTTTAGACCTCCACTTCTATTGAAATTTGCAATGTGTTCGGTAATCCGATTTTTGTTAGCCATATGAATATGAATTCCAACTTTGTAATCGACTTCATCAATTGTTGTTTCATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>339 301 122 77 56 52 24 19 10</canonical_bands>
                <polymorphic_bands>339 301 141 77 56 52 24 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTCAAACGTAGACCAATCA</pcr_primer_p1>
		<pcr_primer_p2>TGAAGCATATATTCACATCAACA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAAGCCTTCATGATCTCCTTAAGCTTCTCAAAGCCATTAGCAGTTGTGAATCTGGCGTCCACTTCTTTAGAATGGAATTTCACAGCTTTTGGAAGTCTCAAAATATCGGCTCTCAACTGAAGATGTTTCACTCGAATTGGTTCACTTCTTCCACCGAAAAGCAGACTGTTGATGTGAATATATGCTTCA</canonical_amplicon>
		<polymorphic_amplicon>GCTCAAACGTAGACCAATCATTGCTCATATACCCGACTCCACAGAGATTGAGTGGGAAACTAGAAKCCTTCATGATCTCCTTAAGCTTCTCAAAGCCATTAGCAGTTGTGAATCTGGCGTCCACTTCTTTAGAATGGAATTTCACAGCTTTTGGAAGTCTCAAAATATCGGCTCTCAACTGAAGATGTTTCACTCGAATTGGTTCACTTCTTCCACCGAAAAGCAGACTGTTGATGTGAATATATGCTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29089</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>341282</contig_pos>
        <strand>+</strand>
        <context>GTAACAGTAC[C/G]CATTGTTGCG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATAATTTTTTAGATTGGTATTTGGTATTCGGAATTCTTTTGTAACAGTAC</left_flank>
        <right_flank>CATTGTTGCGTTTCATTTTTGTGTTTGCGCATTTTGTATATGGGAAACAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACATTTTCCGAGGAATTGCAAGAAGTGTAAATGAGGTTCGAATGTGAATCTTGTGGTATAATTCATACAGTTTCAGATGCTTTTGAATTACACGAAACAATTTTCACAATGATAATAATAAGCTCATAAAGTAATGTATTTGACAAACTAAAGAAACACTATTTATTGAATTTACTCAATAAATCACTATAAAACCTTTAAAACCAGTGAGCCACACTTTAACGGGTCGTCACCAATCGTGAGCGAACACCAGCGAAAACTAAAGAAAACGATGAGAATTTGCCGAGAGAGGAGACGCGTTTTGGCGCGCACACAGTTTCGCGCGCGGATACAGTAATCCACACCTCTTGCACGTGTGTTCGGGGGAGATTTCTCTCCTTTAGACTTGGAAAGAGGATTTTAAAAGAGAAAACACGGTAGAATACCGTACAATAATAATAAGTTGGAAATAATTTTTTAGATTGGTATTTGGTATTCGGAATTCTTTTGTAACAGTACGCATTGTTGCGTTTCATTTTTGTGTTTGCGCATTTTGTATATGGGAAACATAGCAAATTGAATCATTTTCCTATAAAAGTCTAAAAAGTCATGTAGTTATGGAAAAAGTTAAACTTATCTTTACTCAAAAAATTAATATTGATCCTAATGAAATTTTAAAGGGAAGGGAAAATAGTCATTCTTTTGAAATCTGTATGAAATAGTAAAAATTGAAAAAAAACTGGATACATGAAAAATGAGAACTCCGCATTCTGAATGTTGAATTACGTACATTAAATTTTGATACATTACTATATTTGGACTCTGATCGTTATTAGTCTTCAATCTGAATCAGTCGAAAAAATTAAATCAAAAAGTTTCCAATTTTTCACCCAATTCACTAATTTTTCCTGTCAAGTTTTTTGATCCATTCAATCTGTCAAATGAGCAGAAAACAGAGAGAAATCGAGATAAATTGGTTCCCCTCCTACTTATTCTTTTTTTTCATGTGGTTTTCATTTT</canonical>
            <polymorphic>TACATTTTCCGAGGAATTGCAAGAAGTGTAAATGAGGTTCGAATGTGAATCTTGTGGTATAATTCATACAGTTTCAGATGCTTTTGAATTACACGAAACAATTTTCACAATGATAATAATAAGCTCATAAAGTAATGTATTTGACAAACTAAAGAAACACTATTTATTGAATTTACTCAATAAATCACTATAAAACCTTTAAAACCAGTGAGCCACACTTTAACGGGTCGTCACCAATCGTGAGCGAACACCAGCGAAAACTAAAGAAAACGATGAGAATTTGCCGAGAGAGGAGACGCGTTTTGGCGCGCACACAGTTTCGCGCGCGGATACAGTAATCCACACCTCTTGCACGTGTGTTCGGGGGAGATTTCTCTCCTTTAGACTTGGAAAGAGGATTTTAAAAGAGAAAACACGGTAGAATACCGTACAATAATAATAAGTTGGAAATAATTTTTTAGATTGGTATTTGGTATTCGGAATTCTTTTGTAACAGTACSCATTGTTGCGTTTCATTTTTGTGTTTGCGCATTTTGTATATGGGAAACATAGCAAATTGAATCATTTTCCTATAAAAGTCTAAAAAGTCATGTAGTTATGGAAAAAGTTAAACTTATCTTTACTCAAAAAATTAATATTGATCCTAATGAAATTTTAAAGGGAAGGGAAAATAGTCATTCTTTTGAAATCTGTATGAAATAGTAAAAATTGAAAAAAAACTGGATACATGAAAAATGAGAACTCCGCATTCTGAATGTTGAATTACGTACATTAAATTTTGATACATTACTATATTTGGACTCTGATCGTTATTAGTCTTCAATCTGAATCAGTCGAAAAAATTAAATCAAAAAGTTTCCAATTTTTCACCCAATTCACTAATTTTTCCTGTCAAGTTTTTTGATCCATTCAATCTGTCAAATGAGCAGAAAACAGAGAGAAATCGAGATAAATTGGTTCCCCTCCTACTTATTCTTTTTTTTCATGTGGTTTTCATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTCATAAAGTAATGTATTTGACA</pcr_primer_p1>
		<pcr_primer_p2>TGCTATGTTTCCCATATACAAA</pcr_primer_p2>
		<pcr_amplicon_size>433</pcr_amplicon_size>
		<canonical_amplicon>AGCTCATAAAGTAATGTATTTGACAAACTAAAGAAACACTATTTATTGAATTTACTCAATAAATCACTATAAAACCTTTAAAACCAGTGAGCCACACTTTAACGGGTCGTCACCAATCGTGAGCGAACACCAGCGAAAACTAAAGAAAACGATGAGAATTTGCCGAGAGAGGAGACGCGTTTTGGCGCGCACACAGTTTCGCGCGCGGATACAGTAATCCACACCTCTTGCACGTGTGTTCGGGGGAGATTTCTCTCCTTTAGACTTGGAAAGAGGATTTTAAAAGAGAAAACACGGTAGAATACCGTACAATAATAATAAGTTGGAAATAATTTTTTAGATTGGTATTTGGTATTCGGAATTCTTTTGTAACAGTACGCATTGTTGCGTTTCATTTTTGTGTTTGCGCATTTTGTATATGGGAAACATAGCA</canonical_amplicon>
		<polymorphic_amplicon>AGCTCATAAAGTAATGTATTTGACAAACTAAAGAAACACTATTTATTGAATTTACTCAATAAATCACTATAAAACCTTTAAAACCAGTGAGCCACACTTTAACGGGTCGTCACCAATCGTGAGCGAACACCAGCGAAAACTAAAGAAAACGATGAGAATTTGCCGAGAGAGGAGACGCGTTTTGGCGCGCACACAGTTTCGCGCGCGGATACAGTAATCCACACCTCTTGCACGTGTGTTCGGGGGAGATTTCTCTCCTTTAGACTTGGAAAGAGGATTTTAAAAGAGAAAACACGGTAGAATACCGTACAATAATAATAAGTTGGAAATAATTTTTTAGATTGGTATTTGGTATTCGGAATTCTTTTGTAACAGTACSCATTGTTGCGTTTCATTTTTGTGTTTGCGCATTTTGTATATGGGAAACATAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29090</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>377975</contig_pos>
        <strand></strand>
        <context>TAATCTGTGA[C/T]ATAGATTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCTCTGATTAAAAAAATTACGGTTTTCAAAGCAAGTTATAATCTGTGA</left_flank>
        <right_flank>ATAGATTTTTAAAGTGTTGATTGTCAGTTTTGATATTCGAAATTCTGAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCCATCCTTTTAGGTACCAAACCTCACACCCTTCTATTTATTTCAATATTTTCTCTGATTCTCTCATAATCTCCTTTTCTCTACAAAACAGAGGCCTCCTTCCTCAGTGGCAACAACTCTCTCTCTCTCTTTTATTTTTCAACTCATAGACTCTCCTATGAATAATTCATAGGGGAGGGCAACATATTCTCTTGACACAACTGACACCCTCTCTTAAAACTTACTGTTGAATTTTTGTTCCTGAAAAGTTGTTTTTTTTTGGTTATGTGGTTACGAAAATCTTGGAAAAAATCTTTTAGTTACATGATTATTGTTTATAGAAACTCAAAATTTTCAAATTGAATGTGAAATGGTAATTTATTATTTTGGGATTGTTGTTCTTGAAAACTTTTTTGAAAAGGTTTTTTATGGAAATCCTGAAAACTATATGATTATTTATTTATAATATTTTCTCTGATTAAAAAAATTACGGTTTTCAAAGCAAGTTATAATCTGTGACATAGATTTTTAAAGTGTTGATTGTCAGTTTTGATATTCGAAATTCTGAAAACATTTTGGTATTGGAGACTCTCAAGATTCAAGGAACTTCAAAAATTTTCCTGGAAATAATCTCCAACGATTTTGAAAACTCTGAAAATCTGAAAATACTTCCGATAATCAGAAAGAACCAAGCAATTCAATATAGTTTTGGAATTTCTCAGAAATTTGAAAACTTAAAAAAAACAAAACTAATTTTGCTGTTTTTCAATATACTTGAATTTCAATGGCAACTTCTTTACTGTTCAGATACGCCTTTTACCAAACGAATTCCCGAAATTTTCAAACTTTGAAAATTTTTTTTGTATTTTTCAAAGGTCTAGGATTGTTTTAATCTGAAAAACTGTTCCTAAAATAAATTTAATTAAACAAATTCAAACAATCCGAAAGCCCAAAATTCTGAAAAAAAACCTAATTTTACTGTTTCTTCAGTTTCATGAACATTCTGTTTTTTTTCTTGAT</canonical>
            <polymorphic>AGCCATCCTTTTAGGTACCAAACCTCACACCCTTCTATTTATTTCAATATTTTCTCTGATTCTCTCATAATCTCCTTTTCTCTACAAAACAGAGGCCTCCTTCCTCAGTGGCAACAACTCTCTCTCTCTCTTTTATTTTTCAACTCATAGACTCTCCTATGAATAATTCATAGGGGAGGGCAACATATTCTCTTGACACAACTGACACCCTCTCTTAAAACTTACTGTTGAATTTTTGTTCCTGAAAAGTTGTTTTTTTTTGGTTATGTGGTTACGAAAATCTTGGAAAAAATCTTTTAGTTACATGATTATTGTTTATAGAAACTCAAAATTTTCAAATTGAATGTGAAATGGTAATTTATTATTTTGGGATTGTTGTTCTTGAAAACTTTTTTGAAAAGGTTTTTTATGGAAATCCTGAAAACTATATGATTATTTATTTATAATATTTTCTCTGATTAAAAAAATTACGGTTTTCAAAGCAAGTTATAATCTGTGAYATAGATTTTTAAAGTGTTGATTGTCAGTTTTGATATTCGAAATTCTGAAAACATTTTGGTATTGGAGACTCTCAAGATTCAAGGAACTTCAAAAATTTTCCTGGAAATAATCTCCAACGATTTTGAAAACTCTGAAAATCTGAAAATACTTCCGATAATCAGAAAGAACCAAGCAATTCAATATAGTTTTGGAATTTCTCAGAAATTTGAAAACTTAAAAAAAACAAAACTAATTTTGCTGTTTTTCAATATACTTGAATTTCAATGGCAACTTCTTTACTGTTCAGATACGCCTTTTACCAAACGAATTCCCGAAATTTTCAAACTTTGAAAATTTTTTTTGTATTTTTCAAAGGTCTAGGATTGTTTTAATCTGAAAAACTGTTCCTAAAATAAATTTAATTAAACAAATTCAAACAATCCGAAAGCCCAAAATTCTGAAAAAAAACCTAATTTTACTGTTTCTTCAGTTTCATGAACATTCTGTTTTTTTTCTTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 270 196 29</canonical_bands>
                <polymorphic_bands>701 270 29</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATTATTTTGGGATTGTTGTTC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTTTTGAAGTTCCTTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTATTATTTTGGGATTGTTGTTCTTGAAAACTTTTTTGAAAAGGTTTTTTATGGAAATCCTGAAAACTATATGATTATTTATTTATAATATTTTCTCTGATTAAAAAAATTACGGTTTTCAAAGCAAGTTATAATCTGTGACATAGATTTTTAAAGTGTTGATTGTCAGTTTTGATATTCGAAATTCTGAAAACATTTTGGTATTGGAGACTCTCAAGATTCAAGGAACTTCAAAAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTATTATTTTGGGATTGTTGTTCTTGAAAACTTTTTTGAAAAGGTTTTTTATGGAAATCCTGAAAACTATATGATTATTTATTTATAATATTTTCTCTGATTAAAAAAATTACGGTTTTCAAAGCAAGTTATAATCTGTGAYATAGATTTTTAAAGTGTTGATTGTCAGTTTTGATATTCGAAATTCTGAAAACATTTTGGTATTGGAGACTCTCAAGATTCAAGGAACTTCAAAAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29091</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>378034</contig_pos>
        <strand></strand>
        <context>AAACATTTTG[G/A]TATTGGAGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTAAAGTGTTGATTGTCAGTTTTGATATTCGAAATTCTGAAAACATTTTG</left_flank>
        <right_flank>TATTGGAGACTCTCAAGATTCAAGGAACTTCAAAAATTTTCCTGGAAATA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTCTCATAATCTCCTTTTCTCTACAAAACAGAGGCCTCCTTCCTCAGTGGCAACAACTCTCTCTCTCTCTTTTATTTTTCAACTCATAGACTCTCCTATGAATAATTCATAGGGGAGGGCAACATATTCTCTTGACACAACTGACACCCTCTCTTAAAACTTACTGTTGAATTTTTGTTCCTGAAAAGTTGTTTTTTTTTGGTTATGTGGTTACGAAAATCTTGGAAAAAATCTTTTAGTTACATGATTATTGTTTATAGAAACTCAAAATTTTCAAATTGAATGTGAAATGGTAATTTATTATTTTGGGATTGTTGTTCTTGAAAACTTTTTTGAAAAGGTTTTTTATGGAAATCCTGAAAACTATATGATTATTTATTTATAATATTTTCTCTGATTAAAAAAATTACGGTTTTCAAAGCAAGTTATAATCTGTGACATAGATTTTTAAAGTGTTGATTGTCAGTTTTGATATTCGAAATTCTGAAAACATTTTGGTATTGGAGACTCTCAAGATTCAAGGAACTTCAAAAATTTTCCTGGAAATAATCTCCAACGATTTTGAAAACTCTGAAAATCTGAAAATACTTCCGATAATCAGAAAGAACCAAGCAATTCAATATAGTTTTGGAATTTCTCAGAAATTTGAAAACTTAAAAAAAACAAAACTAATTTTGCTGTTTTTCAATATACTTGAATTTCAATGGCAACTTCTTTACTGTTCAGATACGCCTTTTACCAAACGAATTCCCGAAATTTTCAAACTTTGAAAATTTTTTTTGTATTTTTCAAAGGTCTAGGATTGTTTTAATCTGAAAAACTGTTCCTAAAATAAATTTAATTAAACAAATTCAAACAATCCGAAAGCCCAAAATTCTGAAAAAAAACCTAATTTTACTGTTTCTTCAGTTTCATGAACATTCTGTTTTTTTTCTTGATTCGCTAACTATAGATAACCCAAACTTTATCAATTTCCAATTATTTCAGAATGTCGTCAT</canonical>
            <polymorphic>TTCTCTCATAATCTCCTTTTCTCTACAAAACAGAGGCCTCCTTCCTCAGTGGCAACAACTCTCTCTCTCTCTTTTATTTTTCAACTCATAGACTCTCCTATGAATAATTCATAGGGGAGGGCAACATATTCTCTTGACACAACTGACACCCTCTCTTAAAACTTACTGTTGAATTTTTGTTCCTGAAAAGTTGTTTTTTTTTGGTTATGTGGTTACGAAAATCTTGGAAAAAATCTTTTAGTTACATGATTATTGTTTATAGAAACTCAAAATTTTCAAATTGAATGTGAAATGGTAATTTATTATTTTGGGATTGTTGTTCTTGAAAACTTTTTTGAAAAGGTTTTTTATGGAAATCCTGAAAACTATATGATTATTTATTTATAATATTTTCTCTGATTAAAAAAATTACGGTTTTCAAAGCAAGTTATAATCTGTGACATAGATTTTTAAAGTGTTGATTGTCAGTTTTGATATTCGAAATTCTGAAAACATTTTGRTATTGGAGACTCTCAAGATTCAAGGAACTTCAAAAATTTTCCTGGAAATAATCTCCAACGATTTTGAAAACTCTGAAAATCTGAAAATACTTCCGATAATCAGAAAGAACCAAGCAATTCAATATAGTTTTGGAATTTCTCAGAAATTTGAAAACTTAAAAAAAACAAAACTAATTTTGCTGTTTTTCAATATACTTGAATTTCAATGGCAACTTCTTTACTGTTCAGATACGCCTTTTACCAAACGAATTCCCGAAATTTTCAAACTTTGAAAATTTTTTTTGTATTTTTCAAAGGTCTAGGATTGTTTTAATCTGAAAAACTGTTCCTAAAATAAATTTAATTAAACAAATTCAAACAATCCGAAAGCCCAAAATTCTGAAAAAAAACCTAATTTTACTGTTTCTTCAGTTTCATGAACATTCTGTTTTTTTTCTTGATTCGCTAACTATAGATAACCCAAACTTTATCAATTTCCAATTATTTCAGAATGTCGTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTAAAGTGTTGATTGTCAGTT</pcr_primer_p1>
		<pcr_primer_p2>CAAGTATATTGAAAAACAGCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTTTAAAGTGTTGATTGTCAGTTTTGATATTCGAAATTCTGAAAACATTTTGGTATTGGAGACTCTCAAGATTCAAGGAACTTCAAAAATTTTCCTGGAAATAATCTCCAACGATTTTGAAAACTCTGAAAATCTGAAAATACTTCCGATAATCAGAAAGAACCAAGCAATTCAATATAGTTTTGGAATTTCTCAGAAATTTGAAAACTTAAAAAAAACAAAACTAATTTTGCTGTTTTTCAATATACTTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTAAAGTGTTGATTGTCAGTTTTGATATTCGAAATTCTGAAAACATTTTGRTATTGGAGACTCTCAAGATTCAAGGAACTTCAAAAATTTTCCTGGAAATAATCTCCAACGATTTTGAAAACTCTGAAAATCTGAAAATACTTCCGATAATCAGAAAGAACCAAGCAATTCAATATAGTTTTGGAATTTCTCAGAAATTTGAAAACTTAAAAAAAACAAAACTAATTTTGCTGTTTTTCAATATACTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29092</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>378126</contig_pos>
        <strand></strand>
        <context>TGAAAATACT[T/C]CCGAWAATCR</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTGGAAATAATCTCCAACGATTTTGAAAACTCTGAAAATCTGAAAATACT</left_flank>
        <right_flank>CCGATAATCAGAAAGAACCAAGCAATTCAATATAGTTTTGGAATTTCTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTCCTATGAATAATTCATAGGGGAGGGCAACATATTCTCTTGACACAACTGACACCCTCTCTTAAAACTTACTGTTGAATTTTTGTTCCTGAAAAGTTGTTTTTTTTTGGTTATGTGGTTACGAAAATCTTGGAAAAAATCTTTTAGTTACATGATTATTGTTTATAGAAACTCAAAATTTTCAAATTGAATGTGAAATGGTAATTTATTATTTTGGGATTGTTGTTCTTGAAAACTTTTTTGAAAAGGTTTTTTATGGAAATCCTGAAAACTATATGATTATTTATTTATAATATTTTCTCTGATTAAAAAAATTACGGTTTTCAAAGCAAGTTATAATCTGTGACATAGATTTTTAAAGTGTTGATTGTCAGTTTTGATATTCGAAATTCTGAAAACATTTTGGTATTGGAGACTCTCAAGATTCAAGGAACTTCAAAAATTTTCCTGGAAATAATCTCCAACGATTTTGAAAACTCTGAAAATCTGAAAATACTTCCGATAATCAGAAAGAACCAAGCAATTCAATATAGTTTTGGAATTTCTCAGAAATTTGAAAACTTAAAAAAAACAAAACTAATTTTGCTGTTTTTCAATATACTTGAATTTCAATGGCAACTTCTTTACTGTTCAGATACGCCTTTTACCAAACGAATTCCCGAAATTTTCAAACTTTGAAAATTTTTTTTGTATTTTTCAAAGGTCTAGGATTGTTTTAATCTGAAAAACTGTTCCTAAAATAAATTTAATTAAACAAATTCAAACAATCCGAAAGCCCAAAATTCTGAAAAAAAACCTAATTTTACTGTTTCTTCAGTTTCATGAACATTCTGTTTTTTTTCTTGATTCGCTAACTATAGATAACCCAAACTTTATCAATTTCCAATTATTTCAGAATGTCGTCATCAGGAATTGTAACTTCCGCTTCAACAGTCTCCACCACAAATGCTTCGAAAAAAGGAAAATGGCCACCCCTACGGACCACATTTATGGCATCA</canonical>
            <polymorphic>CTCTCCTATGAATAATTCATAGGGGAGGGCAACATATTCTCTTGACACAACTGACACCCTCTCTTAAAACTTACTGTTGAATTTTTGTTCCTGAAAAGTTGTTTTTTTTTGGTTATGTGGTTACGAAAATCTTGGAAAAAATCTTTTAGTTACATGATTATTGTTTATAGAAACTCAAAATTTTCAAATTGAATGTGAAATGGTAATTTATTATTTTGGGATTGTTGTTCTTGAAAACTTTTTTGAAAAGGTTTTTTATGGAAATCCTGAAAACTATATGATTATTTATTTATAATATTTTCTCTGATTAAAAAAATTACGGTTTTCAAAGCAAGTTATAATCTGTGACATAGATTTTTAAAGTGTTGATTGTCAGTTTTGATATTCGAAATTCTGAAAACATTTTGGTATTGGAGACTCTCAAGATTCAAGGAACTTCAAAAATTTTCCTGGAAATAATCTCCAACGATTTTGAAAACTCTGAAAATCTGAAAATACTYCCGATAATCAGAAAGAACCAAGCAATTCAATATAGTTTTGGAATTTCTCAGAAATTTGAAAACTTAAAAAAAACAAAACTAATTTTGCTGTTTTTCAATATACTTGAATTTCAATGGCAACTTCTTTACTGTTCAGATACGCCTTTTACCAAACGAATTCCCGAAATTTTCAAACTTTGAAAATTTTTTTTGTATTTTTCAAAGGTCTAGGATTGTTTTAATCTGAAAAACTGTTCCTAAAATAAATTTAATTAAACAAATTCAAACAATCCGAAAGCCCAAAATTCTGAAAAAAAACCTAATTTTACTGTTTCTTCAGTTTCATGAACATTCTGTTTTTTTTCTTGATTCGCTAACTATAGATAACCCAAACTTTATCAATTTCCAATTATTTCAGAATGTCGTCATCAGGAATTGTAACTTCCGCTTCAACAGTCTCCACCACAAATGCTTCGAAAAAAGGAAAATGGCCACCCCTACGGACCACATTTATGGCATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>305 108 104 90 89 87 85 48 40 16 12 8 8</canonical_bands>
                <polymorphic_bands>305 108 104 90 89 87 85 48 40 20 16 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTGGAGACTCTCAAGATTCAA</pcr_primer_p1>
		<pcr_primer_p2>TAAAAGGCGTATCTGAACAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TATTGGAGACTCTCAAGATTCAAGGAACTTCAAAAATTTTCCTGGAAATAATCTCCAACGATTTTGAAAACTCTGAAAATCTGAAAATACTTCCGATAATCAGAAAGAACCAAGCAATTCAATATAGTTTTGGAATTTCTCAGAAATTTGAAAACTTAAAAAAAACAAAACTAATTTTGCTGTTTTTCAATATACTTGAATTTCAATGGCAACTTCTTTACTGTTCAGATACGCCTTTTA</canonical_amplicon>
		<polymorphic_amplicon>TATTGGAGACTCTCAAGATTCAAGGAACTTCAAAAATTTTCCTGGAAATAATCTCCAACGATTTTGAAAACTCTGAAAATCTGAAAATACTYCCGATAATCAGAAAGAACCAAGCAATTCAATATAGTTTTGGAATTTCTCAGAAATTTGAAAACTTAAAAAAAACAAAACTAATTTTGCTGTTTTTCAATATACTTGAATTTCAATGGCAACTTCTTTACTGTTCAGATACGCCTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29093</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>378131</contig_pos>
        <strand></strand>
        <context>ATACTYCCGA[T/A]AATCRGAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATAATCTCCAACGATTTTGAAAACTCTGAAAATCTGAAAATACTTCCGA</left_flank>
        <right_flank>AATCAGAAAGAACCAAGCAATTCAATATAGTTTTGGAATTTCTCAGAAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATGAATAATTCATAGGGGAGGGCAACATATTCTCTTGACACAACTGACACCCTCTCTTAAAACTTACTGTTGAATTTTTGTTCCTGAAAAGTTGTTTTTTTTTGGTTATGTGGTTACGAAAATCTTGGAAAAAATCTTTTAGTTACATGATTATTGTTTATAGAAACTCAAAATTTTCAAATTGAATGTGAAATGGTAATTTATTATTTTGGGATTGTTGTTCTTGAAAACTTTTTTGAAAAGGTTTTTTATGGAAATCCTGAAAACTATATGATTATTTATTTATAATATTTTCTCTGATTAAAAAAATTACGGTTTTCAAAGCAAGTTATAATCTGTGACATAGATTTTTAAAGTGTTGATTGTCAGTTTTGATATTCGAAATTCTGAAAACATTTTGGTATTGGAGACTCTCAAGATTCAAGGAACTTCAAAAATTTTCCTGGAAATAATCTCCAACGATTTTGAAAACTCTGAAAATCTGAAAATACTTCCGATAATCAGAAAGAACCAAGCAATTCAATATAGTTTTGGAATTTCTCAGAAATTTGAAAACTTAAAAAAAACAAAACTAATTTTGCTGTTTTTCAATATACTTGAATTTCAATGGCAACTTCTTTACTGTTCAGATACGCCTTTTACCAAACGAATTCCCGAAATTTTCAAACTTTGAAAATTTTTTTTGTATTTTTCAAAGGTCTAGGATTGTTTTAATCTGAAAAACTGTTCCTAAAATAAATTTAATTAAACAAATTCAAACAATCCGAAAGCCCAAAATTCTGAAAAAAAACCTAATTTTACTGTTTCTTCAGTTTCATGAACATTCTGTTTTTTTTCTTGATTCGCTAACTATAGATAACCCAAACTTTATCAATTTCCAATTATTTCAGAATGTCGTCATCAGGAATTGTAACTTCCGCTTCAACAGTCTCCACCACAAATGCTTCGAAAAAAGGAAAATGGCCACCCCTACGGACCACATTTATGGCATCAATAGT</canonical>
            <polymorphic>CTATGAATAATTCATAGGGGAGGGCAACATATTCTCTTGACACAACTGACACCCTCTCTTAAAACTTACTGTTGAATTTTTGTTCCTGAAAAGTTGTTTTTTTTTGGTTATGTGGTTACGAAAATCTTGGAAAAAATCTTTTAGTTACATGATTATTGTTTATAGAAACTCAAAATTTTCAAATTGAATGTGAAATGGTAATTTATTATTTTGGGATTGTTGTTCTTGAAAACTTTTTTGAAAAGGTTTTTTATGGAAATCCTGAAAACTATATGATTATTTATTTATAATATTTTCTCTGATTAAAAAAATTACGGTTTTCAAAGCAAGTTATAATCTGTGACATAGATTTTTAAAGTGTTGATTGTCAGTTTTGATATTCGAAATTCTGAAAACATTTTGGTATTGGAGACTCTCAAGATTCAAGGAACTTCAAAAATTTTCCTGGAAATAATCTCCAACGATTTTGAAAACTCTGAAAATCTGAAAATACTTCCGAWAATCAGAAAGAACCAAGCAATTCAATATAGTTTTGGAATTTCTCAGAAATTTGAAAACTTAAAAAAAACAAAACTAATTTTGCTGTTTTTCAATATACTTGAATTTCAATGGCAACTTCTTTACTGTTCAGATACGCCTTTTACCAAACGAATTCCCGAAATTTTCAAACTTTGAAAATTTTTTTTGTATTTTTCAAAGGTCTAGGATTGTTTTAATCTGAAAAACTGTTCCTAAAATAAATTTAATTAAACAAATTCAAACAATCCGAAAGCCCAAAATTCTGAAAAAAAACCTAATTTTACTGTTTCTTCAGTTTCATGAACATTCTGTTTTTTTTCTTGATTCGCTAACTATAGATAACCCAAACTTTATCAATTTCCAATTATTTCAGAATGTCGTCATCAGGAATTGTAACTTCCGCTTCAACAGTCTCCACCACAAATGCTTCGAAAAAAGGAAAATGGCCACCCCTACGGACCACATTTATGGCATCAATAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTGGAGACTCTCAAGATTCAA</pcr_primer_p1>
		<pcr_primer_p2>TAAAAGGCGTATCTGAACAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TATTGGAGACTCTCAAGATTCAAGGAACTTCAAAAATTTTCCTGGAAATAATCTCCAACGATTTTGAAAACTCTGAAAATCTGAAAATACTTCCGATAATCAGAAAGAACCAAGCAATTCAATATAGTTTTGGAATTTCTCAGAAATTTGAAAACTTAAAAAAAACAAAACTAATTTTGCTGTTTTTCAATATACTTGAATTTCAATGGCAACTTCTTTACTGTTCAGATACGCCTTTTA</canonical_amplicon>
		<polymorphic_amplicon>TATTGGAGACTCTCAAGATTCAAGGAACTTCAAAAATTTTCCTGGAAATAATCTCCAACGATTTTGAAAACTCTGAAAATCTGAAAATACTTCCGAWAATCAGAAAGAACCAAGCAATTCAATATAGTTTTGGAATTTCTCAGAAATTTGAAAACTTAAAAAAAACAAAACTAATTTTGCTGTTTTTCAATATACTTGAATTTCAATGGCAACTTCTTTACTGTTCAGATACGCCTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29094</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>378136</contig_pos>
        <strand></strand>
        <context>YCCGAWAATC[A/G]GAAAGAACCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTCCAACGATTTTGAAAACTCTGAAAATCTGAAAATACTTCCGATAATC</left_flank>
        <right_flank>GAAAGAACCAAGCAATTCAATATAGTTTTGGAATTTCTCAGAAATTTGAA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAATTCATAGGGGAGGGCAACATATTCTCTTGACACAACTGACACCCTCTCTTAAAACTTACTGTTGAATTTTTGTTCCTGAAAAGTTGTTTTTTTTTGGTTATGTGGTTACGAAAATCTTGGAAAAAATCTTTTAGTTACATGATTATTGTTTATAGAAACTCAAAATTTTCAAATTGAATGTGAAATGGTAATTTATTATTTTGGGATTGTTGTTCTTGAAAACTTTTTTGAAAAGGTTTTTTATGGAAATCCTGAAAACTATATGATTATTTATTTATAATATTTTCTCTGATTAAAAAAATTACGGTTTTCAAAGCAAGTTATAATCTGTGACATAGATTTTTAAAGTGTTGATTGTCAGTTTTGATATTCGAAATTCTGAAAACATTTTGGTATTGGAGACTCTCAAGATTCAAGGAACTTCAAAAATTTTCCTGGAAATAATCTCCAACGATTTTGAAAACTCTGAAAATCTGAAAATACTTCCGATAATCAGAAAGAACCAAGCAATTCAATATAGTTTTGGAATTTCTCAGAAATTTGAAAACTTAAAAAAAACAAAACTAATTTTGCTGTTTTTCAATATACTTGAATTTCAATGGCAACTTCTTTACTGTTCAGATACGCCTTTTACCAAACGAATTCCCGAAATTTTCAAACTTTGAAAATTTTTTTTGTATTTTTCAAAGGTCTAGGATTGTTTTAATCTGAAAAACTGTTCCTAAAATAAATTTAATTAAACAAATTCAAACAATCCGAAAGCCCAAAATTCTGAAAAAAAACCTAATTTTACTGTTTCTTCAGTTTCATGAACATTCTGTTTTTTTTCTTGATTCGCTAACTATAGATAACCCAAACTTTATCAATTTCCAATTATTTCAGAATGTCGTCATCAGGAATTGTAACTTCCGCTTCAACAGTCTCCACCACAAATGCTTCGAAAAAAGGAAAATGGCCACCCCTACGGACCACATTTATGGCATCAATAGTGGCAC</canonical>
            <polymorphic>AATAATTCATAGGGGAGGGCAACATATTCTCTTGACACAACTGACACCCTCTCTTAAAACTTACTGTTGAATTTTTGTTCCTGAAAAGTTGTTTTTTTTTGGTTATGTGGTTACGAAAATCTTGGAAAAAATCTTTTAGTTACATGATTATTGTTTATAGAAACTCAAAATTTTCAAATTGAATGTGAAATGGTAATTTATTATTTTGGGATTGTTGTTCTTGAAAACTTTTTTGAAAAGGTTTTTTATGGAAATCCTGAAAACTATATGATTATTTATTTATAATATTTTCTCTGATTAAAAAAATTACGGTTTTCAAAGCAAGTTATAATCTGTGACATAGATTTTTAAAGTGTTGATTGTCAGTTTTGATATTCGAAATTCTGAAAACATTTTGGTATTGGAGACTCTCAAGATTCAAGGAACTTCAAAAATTTTCCTGGAAATAATCTCCAACGATTTTGAAAACTCTGAAAATCTGAAAATACTTCCGATAATCRGAAAGAACCAAGCAATTCAATATAGTTTTGGAATTTCTCAGAAATTTGAAAACTTAAAAAAAACAAAACTAATTTTGCTGTTTTTCAATATACTTGAATTTCAATGGCAACTTCTTTACTGTTCAGATACGCCTTTTACCAAACGAATTCCCGAAATTTTCAAACTTTGAAAATTTTTTTTGTATTTTTCAAAGGTCTAGGATTGTTTTAATCTGAAAAACTGTTCCTAAAATAAATTTAATTAAACAAATTCAAACAATCCGAAAGCCCAAAATTCTGAAAAAAAACCTAATTTTACTGTTTCTTCAGTTTCATGAACATTCTGTTTTTTTTCTTGATTCGCTAACTATAGATAACCCAAACTTTATCAATTTCCAATTATTTCAGAATGTCGTCATCAGGAATTGTAACTTCCGCTTCAACAGTCTCCACCACAAATGCTTCGAAAAAAGGAAAATGGCCACCCCTACGGACCACATTTATGGCATCAATAGTGGCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTGGAGACTCTCAAGATTCAA</pcr_primer_p1>
		<pcr_primer_p2>TAAAAGGCGTATCTGAACAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TATTGGAGACTCTCAAGATTCAAGGAACTTCAAAAATTTTCCTGGAAATAATCTCCAACGATTTTGAAAACTCTGAAAATCTGAAAATACTTCCGATAATCAGAAAGAACCAAGCAATTCAATATAGTTTTGGAATTTCTCAGAAATTTGAAAACTTAAAAAAAACAAAACTAATTTTGCTGTTTTTCAATATACTTGAATTTCAATGGCAACTTCTTTACTGTTCAGATACGCCTTTTA</canonical_amplicon>
		<polymorphic_amplicon>TATTGGAGACTCTCAAGATTCAAGGAACTTCAAAAATTTTCCTGGAAATAATCTCCAACGATTTTGAAAACTCTGAAAATCTGAAAATACTTCCGATAATCRGAAAGAACCAAGCAATTCAATATAGTTTTGGAATTTCTCAGAAATTTGAAAACTTAAAAAAAACAAAACTAATTTTGCTGTTTTTCAATATACTTGAATTTCAATGGCAACTTCTTTACTGTTCAGATACGCCTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29095</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>378377</contig_pos>
        <strand></strand>
        <context>AATAAATTTA[A/C]TTAAACAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAGGTCTAGGATTGTTTTAATCTGAAAAACTGTTCCTAAAATAAATTTA</left_flank>
        <right_flank>TTAAACAAATTCAAACAATCCGAAAGCCCAAAATTCTGAAAAAAAACCTA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTATGGAAATCCTGAAAACTATATGATTATTTATTTATAATATTTTCTCTGATTAAAAAAATTACGGTTTTCAAAGCAAGTTATAATCTGTGACATAGATTTTTAAAGTGTTGATTGTCAGTTTTGATATTCGAAATTCTGAAAACATTTTGGTATTGGAGACTCTCAAGATTCAAGGAACTTCAAAAATTTTCCTGGAAATAATCTCCAACGATTTTGAAAACTCTGAAAATCTGAAAATACTTCCGATAATCAGAAAGAACCAAGCAATTCAATATAGTTTTGGAATTTCTCAGAAATTTGAAAACTTAAAAAAAACAAAACTAATTTTGCTGTTTTTCAATATACTTGAATTTCAATGGCAACTTCTTTACTGTTCAGATACGCCTTTTACCAAACGAATTCCCGAAATTTTCAAACTTTGAAAATTTTTTTTGTATTTTTCAAAGGTCTAGGATTGTTTTAATCTGAAAAACTGTTCCTAAAATAAATTTAATTAAACAAATTCAAACAATCCGAAAGCCCAAAATTCTGAAAAAAAACCTAATTTTACTGTTTCTTCAGTTTCATGAACATTCTGTTTTTTTTCTTGATTCGCTAACTATAGATAACCCAAACTTTATCAATTTCCAATTATTTCAGAATGTCGTCATCAGGAATTGTAACTTCCGCTTCAACAGTCTCCACCACAAATGCTTCGAAAAAAGGAAAATGGCCACCCCTACGGACCACATTTATGGCATCAATAGTGGCACTTGGCAGCTCTTTTAGCTTTGGATTTCAATTGCTCATCACTAATCCAGCACAAGGGTCATTTATAAAGGTAACCAGGCGTATCAGTCTCAAGATTATTTTTATCATAAATATTTCAGTTCCTGAACGCTTCCAAACACTCCAACGATCCGGACGACGCTAGGATTGCTCATTTGGAAAATCAGTGGTCCGTCATCGTTGCCATTTTCTTTTTGGGTTCAATGACAGGAGCGTTTTTCATCA</canonical>
            <polymorphic>TTTTTTATGGAAATCCTGAAAACTATATGATTATTTATTTATAATATTTTCTCTGATTAAAAAAATTACGGTTTTCAAAGCAAGTTATAATCTGTGACATAGATTTTTAAAGTGTTGATTGTCAGTTTTGATATTCGAAATTCTGAAAACATTTTGGTATTGGAGACTCTCAAGATTCAAGGAACTTCAAAAATTTTCCTGGAAATAATCTCCAACGATTTTGAAAACTCTGAAAATCTGAAAATACTTCCGATAATCAGAAAGAACCAAGCAATTCAATATAGTTTTGGAATTTCTCAGAAATTTGAAAACTTAAAAAAAACAAAACTAATTTTGCTGTTTTTCAATATACTTGAATTTCAATGGCAACTTCTTTACTGTTCAGATACGCCTTTTACCAAACGAATTCCCGAAATTTTCAAACTTTGAAAATTTTTTTTGTATTTTTCAAAGGTCTAGGATTGTTTTAATCTGAAAAACTGTTCCTAAAATAAATTTAMTTAAACAAATTCAAACAATCCGAAAGCCCAAAATTCTGAAAAAAAACCTAATTTTACTGTTTCTTCAGTTTCATGAACATTCTGTTTTTTTTCTTGATTCGCTAACTATAGATAACCCAAACTTTATCAATTTCCAATTATTTCAGAATGTCGTCATCAGGAATTGTAACTTCCGCTTCAACAGTCTCCACCACAAATGCTTCGAAAAAAGGAAAATGGCCACCCCTACGGACCACATTTATGGCATCAATAGTGGCACTTGGCAGCTCTTTTAGCTTTGGATTTCAATTGCTCATCACTAATCCAGCACAAGGGTCATTTATAAAGGTAACCAGGCGTATCAGTCTCAAGATTATTTTTATCATAAATATTTCAGTTCCTGAACGCTTCCAAACACTCCAACGATCCGGACGACGCTAGGATTGCTCATTTGGAAAATCAGTGGTCCGTCATCGTTGCCATTTTCTTTTTGGGTTCAATGACAGGAGCGTTTTTCATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>499 206 154 57 50 30 4</canonical_bands>
                <polymorphic_bands>499 206 154 57 50 34</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAATTAA</site>
                <isoschizomers>
                    <enzyme>PacI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>214 125 81 79 75 63 63 53 49 28 26 26 24 18 18 17 11 9 9 7 5</canonical_bands>
                <polymorphic_bands>214 125 81 79 75 63 63 53 49 28 26 26 24 18 18 17 14 11 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACTGTTCAGATACGCCTTTTAC</pcr_primer_p1>
		<pcr_primer_p2>TGGGTTATCTATAGTTAGCGAATC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TACTGTTCAGATACGCCTTTTACCAAACGAATTCCCGAAATTTTCAAACTTTGAAAATTTTTTTTGTATTTTTCAAAGGTCTAGGATTGTTTTAATCTGAAAAACTGTTCCTAAAATAAATTTAATTAAACAAATTCAAACAATCCGAAAGCCCAAAATTCTGAAAAAAAACCTAATTTTACTGTTTCTTCAGTTTCATGAACATTCTGTTTTTTTTCTTGATTCGCTAACTATAGATAACCCA</canonical_amplicon>
		<polymorphic_amplicon>TACTGTTCAGATACGCCTTTTACCAAACGAATTCCCGAAATTTTCAAACTTTGAAAATTTTTTTTGTATTTTTCAAAGGTCTAGGATTGTTTTAATCTGAAAAACTGTTCCTAAAATAAATTTAMTTAAACAAATTCAAACAATCCGAAAGCCCAAAATTCTGAAAAAAAACCTAATTTTACTGTTTCTTCAGTTTCATGAACATTCTGTTTTTTTTCTTGATTCGCTAACTATAGATAACCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29096</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>378542</contig_pos>
        <strand></strand>
        <context>CATCAGGAAT[T/C]GTAACTTCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACCCAAACTTTATCAATTTCCAATTATTTCAGAATGTCGTCATCAGGAAT</left_flank>
        <right_flank>GTAACTTCCGCTTCAACAGTCTCCACCACAAATGCTTCGAAAAAAGGAAA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCTCAAGATTCAAGGAACTTCAAAAATTTTCCTGGAAATAATCTCCAACGATTTTGAAAACTCTGAAAATCTGAAAATACTTCCGATAATCAGAAAGAACCAAGCAATTCAATATAGTTTTGGAATTTCTCAGAAATTTGAAAACTTAAAAAAAACAAAACTAATTTTGCTGTTTTTCAATATACTTGAATTTCAATGGCAACTTCTTTACTGTTCAGATACGCCTTTTACCAAACGAATTCCCGAAATTTTCAAACTTTGAAAATTTTTTTTGTATTTTTCAAAGGTCTAGGATTGTTTTAATCTGAAAAACTGTTCCTAAAATAAATTTAATTAAACAAATTCAAACAATCCGAAAGCCCAAAATTCTGAAAAAAAACCTAATTTTACTGTTTCTTCAGTTTCATGAACATTCTGTTTTTTTTCTTGATTCGCTAACTATAGATAACCCAAACTTTATCAATTTCCAATTATTTCAGAATGTCGTCATCAGGAATTGTAACTTCCGCTTCAACAGTCTCCACCACAAATGCTTCGAAAAAAGGAAAATGGCCACCCCTACGGACCACATTTATGGCATCAATAGTGGCACTTGGCAGCTCTTTTAGCTTTGGATTTCAATTGCTCATCACTAATCCAGCACAAGGGTCATTTATAAAGGTAACCAGGCGTATCAGTCTCAAGATTATTTTTATCATAAATATTTCAGTTCCTGAACGCTTCCAAACACTCCAACGATCCGGACGACGCTAGGATTGCTCATTTGGAAAATCAGTGGTCCGTCATCGTTGCCATTTTCTTTTTGGGTTCAATGACAGGAGCGTTTTTCATCAAAACTGTGGCGGAGAGGTTGGTTTTTTTTTCCAGGAGAACGTCCTAAACCGTAGGAAACAAAAATTGCAGTAGTTTGAAATCTATATGAAACTGGAAAGTTTGTTTTTCAGTACTGTGAAAAAATTCCTTGTTAAAATTCTGATACCTCGAAATTCTGATATTCA</canonical>
            <polymorphic>ACTCTCAAGATTCAAGGAACTTCAAAAATTTTCCTGGAAATAATCTCCAACGATTTTGAAAACTCTGAAAATCTGAAAATACTTCCGATAATCAGAAAGAACCAAGCAATTCAATATAGTTTTGGAATTTCTCAGAAATTTGAAAACTTAAAAAAAACAAAACTAATTTTGCTGTTTTTCAATATACTTGAATTTCAATGGCAACTTCTTTACTGTTCAGATACGCCTTTTACCAAACGAATTCCCGAAATTTTCAAACTTTGAAAATTTTTTTTGTATTTTTCAAAGGTCTAGGATTGTTTTAATCTGAAAAACTGTTCCTAAAATAAATTTAATTAAACAAATTCAAACAATCCGAAAGCCCAAAATTCTGAAAAAAAACCTAATTTTACTGTTTCTTCAGTTTCATGAACATTCTGTTTTTTTTCTTGATTCGCTAACTATAGATAACCCAAACTTTATCAATTTCCAATTATTTCAGAATGTCGTCATCAGGAATYGTAACTTCCGCTTCAACAGTCTCCACCACAAATGCTTCGAAAAAAGGAAAATGGCCACCCCTACGGACCACATTTATGGCATCAATAGTGGCACTTGGCAGCTCTTTTAGCTTTGGATTTCAATTGCTCATCACTAATCCAGCACAAGGGTCATTTATAAAGGTAACCAGGCGTATCAGTCTCAAGATTATTTTTATCATAAATATTTCAGTTCCTGAACGCTTCCAAACACTCCAACGATCCGGACGACGCTAGGATTGCTCATTTGGAAAATCAGTGGTCCGTCATCGTTGCCATTTTCTTTTTGGGTTCAATGACAGGAGCGTTTTTCATCAAAACTGTGGCGGAGAGGTTGGTTTTTTTTTCCAGGAGAACGTCCTAAACCGTAGGAAACAAAAATTGCAGTAGTTTGAAATCTATATGAAACTGGAAAGTTTGTTTTTCAGTACTGTGAAAAAATTCCTTGTTAAAATTCTGATACCTCGAAATTCTGATATTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>276 125 81 79 63 60 49 28 26 26 26 24 18 18 17 16 14 13 11 9 9 7 5</canonical_bands>
                <polymorphic_bands>276 151 81 79 63 60 49 28 26 26 24 18 18 17 16 14 13 11 9 9 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTTCAGTTTCATGAACATTCT</pcr_primer_p1>
		<pcr_primer_p2>GATTAGTGATGAGCAATTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTCTTCAGTTTCATGAACATTCTGTTTTTTTTCTTGATTCGCTAACTATAGATAACCCAAACTTTATCAATTTCCAATTATTTCAGAATGTCGTCATCAGGAATTGTAACTTCCGCTTCAACAGTCTCCACCACAAATGCTTCGAAAAAAGGAAAATGGCCACCCCTACGGACCACATTTATGGCATCAATAGTGGCACTTGGCAGCTCTTTTAGCTTTGGATTTCAATTGCTCATCACTAATC</canonical_amplicon>
		<polymorphic_amplicon>TTCTTCAGTTTCATGAACATTCTGTTTTTTTTCTTGATTCGCTAACTATAGATAACCCAAACTTTATCAATTTCCAATTATTTCAGAATGTCGTCATCAGGAATYGTAACTTCCGCTTCAACAGTCTCCACCACAAATGCTTCGAAAAAAGGAAAATGGCCACCCCTACGGACCACATTTATGGCATCAATAGTGGCACTTGGCAGCTCTTTTAGCTTTGGATTTCAATTGCTCATCACTAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29097</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>388317</contig_pos>
        <strand>-</strand>
        <context>TCCTATGTGT[A/T]ATGTTATCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTATCATGATGGTTTTGAAGCAGGTAAAATACAACAATTTCCTATGTGT</left_flank>
        <right_flank>ATGTTATCAGGAAACCATAATACAGTATTCTCATTATTACAAAATAATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTGCTGGGCGTAGCGATATTGTCAAAAAAATATCCTTCAGGCTGTTGTCGAAGAAAAAAACATCCGACCTGGAATGAAAATGTGTTGCCAAGAAAGAACAACAAACTAACCTTGAACTAATAAACAAATCAATAGTTATTCGTTTAGTTTGGAAGTTCTTAATTCTTTCAGTAAATGTGATAGCATTTTTAAAGTTTTCATTGAAGAAAGTAGAATCTTTAGGTCGCGTATCAAATTCAAATTTGGCTGAAGAAAAAAATCAAACAATCTAACGAAGCATATTTAGGACATTTCAATCGATACGTTTCAGGAGATGGGAAAATCGGAGTGATAACGCTAATTCATCAATGCAAGTTGAAATTGAACTTTTGTAAAACCTGTAATAGAAGGGCCCCCACACTGTTAAAATTGAGCTGAATGTTCATCAGAGGTAGTTTAATTGTTCTCTTATCATGATGGTTTTGAAGCAGGTAAAATACAACAATTTCCTATGTGTAATGTTATCAGGAAACCATAATACAGTATTCTCATTATTACAAAATAATAAATATAGACAAAAATTATGAGAATCTGTGATTCAAATTGATACTCCTCCTTCTCTGATACTCCTCTTGAATCTCCTCCAAATTTTTTCCCTTCGTCTCCGGTAGTATTCAGAAATCTTGGAATTTTTTTCACTTTAGTGTAACTTTCAAACTTTTAGATAAATTTGTTTTGTGAAAAATAAACAGCAAATTTCGATTTTCAGGAATTTCTGGATTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGGGGGACGAAATCGCGTATGTAGACCATCGGTCGTCAGAAACGTTACAGAATCTTATAATTTCAGAACAACAAAACTTCAGAATTATTACTGTTTCCGAACTTTTTCGAGTTTCACACCAAATGCTTTACACACTACTGAGCGAGATGTATCTAAAATGCAATTTTCTAGCTACTCCTAAGTTAGAATCGATTTGTA</canonical>
            <polymorphic>TTTCTGCTGGGCGTAGCGATATTGTCAAAAAAATATCCTTCAGGCTGTTGTCGAAGAAAAAAACATCCGACCTGGAATGAAAATGTGTTGCCAAGAAAGAACAACAAACTAACCTTGAACTAATAAACAAATCAATAGTTATTCGTTTAGTTTGGAAGTTCTTAATTCTTTCAGTAAATGTGATAGCATTTTTAAAGTTTTCATTGAAGAAAGTAGAATCTTTAGGTCGCGTATCAAATTCAAATTTGGCTGAAGAAAAAAATCAAACAATCTAACGAAGCATATTTAGGACATTTCAATCGATACGTTTCAGGAGATGGGAAAATCGGAGTGATAACGCTAATTCATCAATGCAAGTTGAAATTGAACTTTTGTAAAACCTGTAATAGAAGGGCCCCCACACTGTTAAAATTGAGCTGAATGTTCATCAGAGGTAGTTTAATTGTTCTCTTATCATGATGGTTTTGAAGCAGGTAAAATACAACAATTTCCTATGTGTWATGTTATCAGGAAACCATAATACAGTATTCTCATTATTACAAAATAATAAATATAGACAAAAATTATGAGAATCTGTGATTCAAATTGATACTCCTCCTTCTCTGATACTCCTCTTGAATCTCCTCCAAATTTTTTCCCTTCGTCTCCGGTAGTATTCAGAAATCTTGGAATTTTTTTCACTTTAGTGTAACTTTCAAACTTTTAGATAAATTTGTTTTGTGAAAAATAAACAGCAAATTTCGATTTTCAGGAATTTCTGGATTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGGGGGACGAAATCGCGTATGTAGACCATCGGTCGTCAGAAACGTTACAGAATCTTATAATTTCAGAACAACAAAACTTCAGAATTATTACTGTTTCCGAACTTTTTCGAGTTTCACACCAAATGCTTTACACACTACTGAGCGAGATGTATCTAAAATGCAATTTTCTAGCTACTCCTAAGTTAGAATCGATTTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTCATCAGAGGTAGTTTAATTG</pcr_primer_p1>
		<pcr_primer_p2>TTCCAAGATTTCTGAATACTACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTTCATCAGAGGTAGTTTAATTGTTCTCTTATCATGATGGTTTTGAAGCAGGTAAAATACAACAATTTCCTATGTGTAATGTTATCAGGAAACCATAATACAGTATTCTCATTATTACAAAATAATAAATATAGACAAAAATTATGAGAATCTGTGATTCAAATTGATACTCCTCCTTCTCTGATACTCCTCTTGAATCTCCTCCAAATTTTTTCCCTTCGTCTCCGGTAGTATTCAGAAATCTTGGAA</canonical_amplicon>
		<polymorphic_amplicon>TGTTCATCAGAGGTAGTTTAATTGTTCTCTTATCATGATGGTTTTGAAGCAGGTAAAATACAACAATTTCCTATGTGTWATGTTATCAGGAAACCATAATACAGTATTCTCATTATTACAAAATAATAAATATAGACAAAAATTATGAGAATCTGTGATTCAAATTGATACTCCTCCTTCTCTGATACTCCTCTTGAATCTCCTCCAAATTTTTTCCCTTCGTCTCCGGTAGTATTCAGAAATCTTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29098</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>388343</contig_pos>
        <strand>-</strand>
        <context>CATAATACAG[A/G]ATTCTCATTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATACAACAATTTCCTATGTGTAATGTTATCAGGAAACCATAATACAG</left_flank>
        <right_flank>ATTCTCATTATTACAAAATAATAAATATAGACAAAAATTATGAGAATCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAATATCCTTCAGGCTGTTGTCGAAGAAAAAAACATCCGACCTGGAATGAAAATGTGTTGCCAAGAAAGAACAACAAACTAACCTTGAACTAATAAACAAATCAATAGTTATTCGTTTAGTTTGGAAGTTCTTAATTCTTTCAGTAAATGTGATAGCATTTTTAAAGTTTTCATTGAAGAAAGTAGAATCTTTAGGTCGCGTATCAAATTCAAATTTGGCTGAAGAAAAAAATCAAACAATCTAACGAAGCATATTTAGGACATTTCAATCGATACGTTTCAGGAGATGGGAAAATCGGAGTGATAACGCTAATTCATCAATGCAAGTTGAAATTGAACTTTTGTAAAACCTGTAATAGAAGGGCCCCCACACTGTTAAAATTGAGCTGAATGTTCATCAGAGGTAGTTTAATTGTTCTCTTATCATGATGGTTTTGAAGCAGGTAAAATACAACAATTTCCTATGTGTAATGTTATCAGGAAACCATAATACAGTATTCTCATTATTACAAAATAATAAATATAGACAAAAATTATGAGAATCTGTGATTCAAATTGATACTCCTCCTTCTCTGATACTCCTCTTGAATCTCCTCCAAATTTTTTCCCTTCGTCTCCGGTAGTATTCAGAAATCTTGGAATTTTTTTCACTTTAGTGTAACTTTCAAACTTTTAGATAAATTTGTTTTGTGAAAAATAAACAGCAAATTTCGATTTTCAGGAATTTCTGGATTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGGGGGACGAAATCGCGTATGTAGACCATCGGTCGTCAGAAACGTTACAGAATCTTATAATTTCAGAACAACAAAACTTCAGAATTATTACTGTTTCCGAACTTTTTCGAGTTTCACACCAAATGCTTTACACACTACTGAGCGAGATGTATCTAAAATGCAATTTTCTAGCTACTCCTAAGTTAGAATCGATTTGTAAATATATTTAGGTTGCTTGAAATTCT</canonical>
            <polymorphic>AAAAAAATATCCTTCAGGCTGTTGTCGAAGAAAAAAACATCCGACCTGGAATGAAAATGTGTTGCCAAGAAAGAACAACAAACTAACCTTGAACTAATAAACAAATCAATAGTTATTCGTTTAGTTTGGAAGTTCTTAATTCTTTCAGTAAATGTGATAGCATTTTTAAAGTTTTCATTGAAGAAAGTAGAATCTTTAGGTCGCGTATCAAATTCAAATTTGGCTGAAGAAAAAAATCAAACAATCTAACGAAGCATATTTAGGACATTTCAATCGATACGTTTCAGGAGATGGGAAAATCGGAGTGATAACGCTAATTCATCAATGCAAGTTGAAATTGAACTTTTGTAAAACCTGTAATAGAAGGGCCCCCACACTGTTAAAATTGAGCTGAATGTTCATCAGAGGTAGTTTAATTGTTCTCTTATCATGATGGTTTTGAAGCAGGTAAAATACAACAATTTCCTATGTGTAATGTTATCAGGAAACCATAATACAGRATTCTCATTATTACAAAATAATAAATATAGACAAAAATTATGAGAATCTGTGATTCAAATTGATACTCCTCCTTCTCTGATACTCCTCTTGAATCTCCTCCAAATTTTTTCCCTTCGTCTCCGGTAGTATTCAGAAATCTTGGAATTTTTTTCACTTTAGTGTAACTTTCAAACTTTTAGATAAATTTGTTTTGTGAAAAATAAACAGCAAATTTCGATTTTCAGGAATTTCTGGATTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGGGGGACGAAATCGCGTATGTAGACCATCGGTCGTCAGAAACGTTACAGAATCTTATAATTTCAGAACAACAAAACTTCAGAATTATTACTGTTTCCGAACTTTTTCGAGTTTCACACCAAATGCTTTACACACTACTGAGCGAGATGTATCTAAAATGCAATTTTCTAGCTACTCCTAAGTTAGAATCGATTTGTAAATATATTTAGGTTGCTTGAAATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>378 275 132 120 95</canonical_bands>
                <polymorphic_bands>395 378 132 95</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTCATCAGAGGTAGTTTAATTG</pcr_primer_p1>
		<pcr_primer_p2>TTCCAAGATTTCTGAATACTACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTTCATCAGAGGTAGTTTAATTGTTCTCTTATCATGATGGTTTTGAAGCAGGTAAAATACAACAATTTCCTATGTGTAATGTTATCAGGAAACCATAATACAGTATTCTCATTATTACAAAATAATAAATATAGACAAAAATTATGAGAATCTGTGATTCAAATTGATACTCCTCCTTCTCTGATACTCCTCTTGAATCTCCTCCAAATTTTTTCCCTTCGTCTCCGGTAGTATTCAGAAATCTTGGAA</canonical_amplicon>
		<polymorphic_amplicon>TGTTCATCAGAGGTAGTTTAATTGTTCTCTTATCATGATGGTTTTGAAGCAGGTAAAATACAACAATTTCCTATGTGTAATGTTATCAGGAAACCATAATACAGRATTCTCATTATTACAAAATAATAAATATAGACAAAAATTATGAGAATCTGTGATTCAAATTGATACTCCTCCTTCTCTGATACTCCTCTTGAATCTCCTCCAAATTTTTTCCCTTCGTCTCCGGTAGTATTCAGAAATCTTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29099</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>389795</contig_pos>
        <strand>+</strand>
        <context>GCATTTCAGG[C/T]CATTTGTCCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGGAAAGAGAACTGTTTCGAAATGTAGAGATAGCAAAGGCATTTCAGG</left_flank>
        <right_flank>CATTTGTCCTGCAGAAAGCTTCGTGGCCTAAATAACTTCATGACCGGTAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTTGAGGAGATTCAAGAGGAGTATCAATTTGAATCACAGATTCTCATAATTTTTGTCTATATTTATTATTTTGTAATAATGAGAATACTGTATTATGGTTTCCTGATAACATTACACATAGGAAATTGTTGTATTTTACCTGCTTCAAAACCATCATGATAAGAGAACAATTAAACTACCTCTGATGAACATTCAGCTCAATTTTAACAGTGTGGGGGCCCTTCTATTACAGGTTTTACAAAAGTTCAATTTCAACTTGCATTGATGAATTAGCGTTATCACTCCGATTTTCCCATCTCCTGAAACGTATCGATTGAAATGTCCTACTCACATTGCAACTTCTTTTCCGAAAAGCCCCCCGTTTCTTATCAATTGTTCATTTCTTCTAGAACATACAGACACTTTTACTAGGTCAGTCAGTTCGTTATCAAATATGTCACTCTAAAATGGAAAGAGAACTGTTTCGAAATGTAGAGATAGCAAAGGCATTTCAGGCCATTTGTCCTGCAGAAAGCTTCGTGGCCTAAATAACTTCATGACCGGTAGGCTAGACCACCAATCTATTCATCCTAAAATGACTATAATCAGAACGTTGTTACGGAAATGTGTTAATAACTTTTATCAATCTACCCCAGACATATCCAAAATCTGAAGCACCGATTCTCAAAAAGTAGGTGTTCAAAAATCTAGATTAATCTAGGATTTCTTGTTAGGCAACCGATGAATAATAGCAACATATCTAAAAGTTTCATAACGATAAGAAACAGAAATTTGAATTTTTCACTGTTTCAAGATTCTAGTATAATTGAAGACTTGCAGTTTTTGTTTACTGACTAGCCTTCATTGATCTGTAAAGATTTCCAAGTCTACTGATATTCTAAAAATGTTAATAGAGCGCACTTCCTGAGTAATATGAATTACCGTTTTATTTTGATACTAAACTTTTTAGGCACTTCTGAAAATTGTTAGTGGCACTGAGGAAACAATTTAAAAATA</canonical>
            <polymorphic>AAATTTTGAGGAGATTCAAGAGGAGTATCAATTTGAATCACAGATTCTCATAATTTTTGTCTATATTTATTATTTTGTAATAATGAGAATACTGTATTATGGTTTCCTGATAACATTACACATAGGAAATTGTTGTATTTTACCTGCTTCAAAACCATCATGATAAGAGAACAATTAAACTACCTCTGATGAACATTCAGCTCAATTTTAACAGTGTGGGGGCCCTTCTATTACAGGTTTTACAAAAGTTCAATTTCAACTTGCATTGATGAATTAGCGTTATCACTCCGATTTTCCCATCTCCTGAAACGTATCGATTGAAATGTCCTACTCACATTGCAACTTCTTTTCCGAAAAGCCCCCCGTTTCTTATCAATTGTTCATTTCTTCTAGAACATACAGACACTTTTACTAGGTCAGTCAGTTCGTTATCAAATATGTCACTCTAAAATGGAAAGAGAACTGTTTCGAAATGTAGAGATAGCAAAGGCATTTCAGGYCATTTGTCCTGCAGAAAGCTTCGTGGCCTAAATAACTTCATGACCGGTAGGCTAGACCACCAATCTATTCATCCTAAAATGACTATAATCAGAACGTTGTTACGGAAATGTGTTAATAACTTTTATCAATCTACCCCAGACATATCCAAAATCTGAAGCACCGATTCTCAAAAAGTAGGTGTTCAAAAATCTAGATTAATCTAGGATTTCTTGTTAGGCAACCGATGAATAATAGCAACATATCTAAAAGTTTCATAACGATAAGAAACAGAAATTTGAATTTTTCACTGTTTCAAGATTCTAGTATAATTGAAGACTTGCAGTTTTTGTTTACTGACTAGCCTTCATTGATCTGTAAAGATTTCCAAGTCTACTGATATTCTAAAAATGTTAATAGAGCGCACTTCCTGAGTAATATGAATTACCGTTTTATTTTGATACTAAACTTTTTAGGCACTTCTGAAAATTGTTAGTGGCACTGAGGAAACAATTTAAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>474 277 222 27</canonical_bands>
                <polymorphic_bands>474 304 222</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>290 200 159 141 136 25 22 19 8</canonical_bands>
                <polymorphic_bands>290 200 160 159 136 25 22 8</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>499 474 27</canonical_bands>
                <polymorphic_bands>526 474</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTACTCACATTGCAACTTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTAGGATGAATAGATTGGTGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTACTCACATTGCAACTTCTTTTCCGAAAAGCCCCCCGTTTCTTATCAATTGTTCATTTCTTCTAGAACATACAGACACTTTTACTAGGTCAGTCAGTTCGTTATCAAATATGTCACTCTAAAATGGAAAGAGAACTGTTTCGAAATGTAGAGATAGCAAAGGCATTTCAGGCCATTTGTCCTGCAGAAAGCTTCGTGGCCTAAATAACTTCATGACCGGTAGGCTAGACCACCAATCTATTCATCCTAA</canonical_amplicon>
		<polymorphic_amplicon>CTACTCACATTGCAACTTCTTTTCCGAAAAGCCCCCCGTTTCTTATCAATTGTTCATTTCTTCTAGAACATACAGACACTTTTACTAGGTCAGTCAGTTCGTTATCAAATATGTCACTCTAAAATGGAAAGAGAACTGTTTCGAAATGTAGAGATAGCAAAGGCATTTCAGGYCATTTGTCCTGCAGAAAGCTTCGTGGCCTAAATAACTTCATGACCGGTAGGCTAGACCACCAATCTATTCATCCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29100</snp_id>
        <super_contig>c004400792.Contig2</super_contig>
        <contig_pos>389966</contig_pos>
        <strand>+</strand>
        <context>CCGATTCTCA[A/G]AAAGTAGGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTATCAATCTACCCCAGACATATCCAAAATCTGAAGCACCGATTCTCA</left_flank>
        <right_flank>AAAGTAGGTGTTCAAAAATCTAGATTAATCTAGGATTTCTTGTTAGGCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTAAACTACCTCTGATGAACATTCAGCTCAATTTTAACAGTGTGGGGGCCCTTCTATTACAGGTTTTACAAAAGTTCAATTTCAACTTGCATTGATGAATTAGCGTTATCACTCCGATTTTCCCATCTCCTGAAACGTATCGATTGAAATGTCCTACTCACATTGCAACTTCTTTTCCGAAAAGCCCCCCGTTTCTTATCAATTGTTCATTTCTTCTAGAACATACAGACACTTTTACTAGGTCAGTCAGTTCGTTATCAAATATGTCACTCTAAAATGGAAAGAGAACTGTTTCGAAATGTAGAGATAGCAAAGGCATTTCAGGCCATTTGTCCTGCAGAAAGCTTCGTGGCCTAAATAACTTCATGACCGGTAGGCTAGACCACCAATCTATTCATCCTAAAATGACTATAATCAGAACGTTGTTACGGAAATGTGTTAATAACTTTTATCAATCTACCCCAGACATATCCAAAATCTGAAGCACCGATTCTCAAAAAGTAGGTGTTCAAAAATCTAGATTAATCTAGGATTTCTTGTTAGGCAACCGATGAATAATAGCAACATATCTAAAAGTTTCATAACGATAAGAAACAGAAATTTGAATTTTTCACTGTTTCAAGATTCTAGTATAATTGAAGACTTGCAGTTTTTGTTTACTGACTAGCCTTCATTGATCTGTAAAGATTTCCAAGTCTACTGATATTCTAAAAATGTTAATAGAGCGCACTTCCTGAGTAATATGAATTACCGTTTTATTTTGATACTAAACTTTTTAGGCACTTCTGAAAATTGTTAGTGGCACTGAGGAAACAATTTAAAAATATTCTCGATATAAATCTCGCTGTTTCAAAGATACGGTAACTTTGACACTTACCATTTGTTTTCAATTTCAACAAGATAATTGTAAGTCCTATCAAAATCGTTGGAATTCGGAAAATGGTTTAAAACGCTAAGCCAAACTTTTTTCTCAATGAAGCGCATTTTCAGACCCTTA</canonical>
            <polymorphic>CAATTAAACTACCTCTGATGAACATTCAGCTCAATTTTAACAGTGTGGGGGCCCTTCTATTACAGGTTTTACAAAAGTTCAATTTCAACTTGCATTGATGAATTAGCGTTATCACTCCGATTTTCCCATCTCCTGAAACGTATCGATTGAAATGTCCTACTCACATTGCAACTTCTTTTCCGAAAAGCCCCCCGTTTCTTATCAATTGTTCATTTCTTCTAGAACATACAGACACTTTTACTAGGTCAGTCAGTTCGTTATCAAATATGTCACTCTAAAATGGAAAGAGAACTGTTTCGAAATGTAGAGATAGCAAAGGCATTTCAGGCCATTTGTCCTGCAGAAAGCTTCGTGGCCTAAATAACTTCATGACCGGTAGGCTAGACCACCAATCTATTCATCCTAAAATGACTATAATCAGAACGTTGTTACGGAAATGTGTTAATAACTTTTATCAATCTACCCCAGACATATCCAAAATCTGAAGCACCGATTCTCARAAAGTAGGTGTTCAAAAATCTAGATTAATCTAGGATTTCTTGTTAGGCAACCGATGAATAATAGCAACATATCTAAAAGTTTCATAACGATAAGAAACAGAAATTTGAATTTTTCACTGTTTCAAGATTCTAGTATAATTGAAGACTTGCAGTTTTTGTTTACTGACTAGCCTTCATTGATCTGTAAAGATTTCCAAGTCTACTGATATTCTAAAAATGTTAATAGAGCGCACTTCCTGAGTAATATGAATTACCGTTTTATTTTGATACTAAACTTTTTAGGCACTTCTGAAAATTGTTAGTGGCACTGAGGAAACAATTTAAAAATATTCTCGATATAAATCTCGCTGTTTCAAAGATACGGTAACTTTGACACTTACCATTTGTTTTCAATTTCAACAAGATAATTGTAAGTCCTATCAAAATCGTTGGAATTCGGAAAATGGTTTAAAACGCTAAGCCAAACTTTTTTCTCAATGAAGCGCATTTTCAGACCCTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTTATCAATCTACCCCAGAC</pcr_primer_p1>
		<pcr_primer_p2>TTGGAAATCTTTACAGATCAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTTTATCAATCTACCCCAGACATATCCAAAATCTGAAGCACCGATTCTCAAAAAGTAGGTGTTCAAAAATCTAGATTAATCTAGGATTTCTTGTTAGGCAACCGATGAATAATAGCAACATATCTAAAAGTTTCATAACGATAAGAAACAGAAATTTGAATTTTTCACTGTTTCAAGATTCTAGTATAATTGAAGACTTGCAGTTTTTGTTTACTGACTAGCCTTCATTGATCTGTAAAGATTTCCAA</canonical_amplicon>
		<polymorphic_amplicon>ACTTTTATCAATCTACCCCAGACATATCCAAAATCTGAAGCACCGATTCTCARAAAGTAGGTGTTCAAAAATCTAGATTAATCTAGGATTTCTTGTTAGGCAACCGATGAATAATAGCAACATATCTAAAAGTTTCATAACGATAAGAAACAGAAATTTGAATTTTTCACTGTTTCAAGATTCTAGTATAATTGAAGACTTGCAGTTTTTGTTTACTGACTAGCCTTCATTGATCTGTAAAGATTTCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29101</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>60563</contig_pos>
        <strand>+</strand>
        <context>GGTGGCGGGG[C/T]AGGTGCCCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGCGGCGTGAGTGGCCGTTGTCCTGGCCGTGGAGGGAGTGGTGGCGGGG</left_flank>
        <right_flank>AGGTGCCCGTGGCTCTGGCTCCGGCTGCGGTTCCGGCTCTGGCGCGGCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTAGAACTGGCCATTTCAGAACTGACAACTACATCCGGTGAATTGGAATTGACTCTGTTGCAAATGCTCTTTCAGAACTGAGAATTTTCTCAGGTTGAACTTAAAAACTTGTCACGTTACAACAAAAAATTGGAACACCCTCTTCAAAACCACTCGGTTGAGAAATAGTTAGTGGCAATATTGCAATACGCTTCTATTCAATTAAAAATCGCACAATAATGCATCCACTAAAACCGTCAGGTGGTGAATAAACCCTTCTCACCTGCTCGTCTCTTCTTGCTCTTCTGAACCGATGGATCCATTCCATATTCTGCGGAAGGCCCAGTGCTCGTGGTGGTGGCGACATCTCCTGAAAAAGTTACAGATGAAAATTGTCTTAATTTTTCACAAGCTAAACTCGCCCTAGCTCTCAAGCGAGCCTGAGCGTGTGGCCGTGGTGGTACCGGGGGCGGCGTGAGTGGCCGTTGTCCTGGCCGTGGAGGGAGTGGTGGCGGGGTAGGTGCCCGTGGCTCTGGCTCCGGCTGCGGTTCCGGCTCTGGCGCGGCCGGTGGCGGGACGTCTGAAACTCCCAGACCGGCATCAACCTTTGGCTCCTCTCTCAACGGTTCTGGGATCATCTAAAATAATGAAATAAATTGAGGATTGGAAATAAACTGAAAATAAAGTTTCTGGGCTCTATGAGGTTTTCCAAAAACGGATTGAAAAGAAATAATTGAGAATTTTCGTTTGAAGCAATACCAACATGTTATCGCAATCAAAATCTCTGGGAAGTTGACAATAACACTATCTAATTTTTGAGAAGCGGTATAAAAACAAATGAGAGGGGACAAGTCTGTTATCAAGATTGAACTGTTTTTCATCGCACTTACAACTAAGTGTTCTGCTTATGTATGATCACATATTTAGTCCAGAGCAGTATTGATTTTCAATACTACCAACAGAAACATCTAGTGGGAAATTTCAAAGCCCAGTGAGTATTTGATTTTTACCTTTTTTT</canonical>
            <polymorphic>GTTTTAGAACTGGCCATTTCAGAACTGACAACTACATCCGGTGAATTGGAATTGACTCTGTTGCAAATGCTCTTTCAGAACTGAGAATTTTCTCAGGTTGAACTTAAAAACTTGTCACGTTACAACAAAAAATTGGAACACCCTCTTCAAAACCACTCGGTTGAGAAATAGTTAGTGGCAATATTGCAATACGCTTCTATTCAATTAAAAATCGCACAATAATGCATCCACTAAAACCGTCAGGTGGTGAATAAACCCTTCTCACCTGCTCGTCTCTTCTTGCTCTTCTGAACCGATGGATCCATTCCATATTCTGCGGAAGGCCCAGTGCTCGTGGTGGTGGCGACATCTCCTGAAAAAGTTACAGATGAAAATTGTCTTAATTTTTCACAAGCTAAACTCGCCCTAGCTCTCAAGCGAGCCTGAGCGTGTGGCCGTGGTGGTACCGGGGGCGGCGTGAGTGGCCGTTGTCCTGGCCGTGGAGGGAGTGGTGGCGGGGYAGGTGCCCGTGGCTCTGGCTCCGGCTGCGGTTCCGGCTCTGGCGCGGCCGGTGGCGGGACGTCTGAAACTCCCAGACCGGCATCAACCTTTGGCTCCTCTCTCAACGGTTCTGGGATCATCTAAAATAATGAAATAAATTGAGGATTGGAAATAAACTGAAAATAAAGTTTCTGGGCTCTATGAGGTTTTCCAAAAACGGATTGAAAAGAAATAATTGAGAATTTTCGTTTGAAGCAATACCAACATGTTATCGCAATCAAAATCTCTGGGAAGTTGACAATAACACTATCTAATTTTTGAGAAGCGGTATAAAAACAAATGAGAGGGGACAAGTCTGTTATCAAGATTGAACTGTTTTTCATCGCACTTACAACTAAGTGTTCTGCTTATGTATGATCACATATTTAGTCCAGAGCAGTATTGATTTTCAATACTACCAACAGAAACATCTAGTGGGAAATTTCAAAGCCCAGTGAGTATTTGATTTTTACCTTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCTTAATTTTTCACAAGCTAAA</pcr_primer_p1>
		<pcr_primer_p2>TATTTTAGATGATCCCAGAACC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TGTCTTAATTTTTCACAAGCTAAACTCGCCCTAGCTCTCAAGCGAGCCTGAGCGTGTGGCCGTGGTGGTACCGGGGGCGGCGTGAGTGGCCGTTGTCCTGGCCGTGGAGGGAGTGGTGGCGGGGTAGGTGCCCGTGGCTCTGGCTCCGGCTGCGGTTCCGGCTCTGGCGCGGCCGGTGGCGGGACGTCTGAAACTCCCAGACCGGCATCAACCTTTGGCTCCTCTCTCAACGGTTCTGGGATCATCTAAAATA</canonical_amplicon>
		<polymorphic_amplicon>TGTCTTAATTTTTCACAAGCTAAACTCGCCCTAGCTCTCAAGCGAGCCTGAGCGTGTGGCCGTGGTGGTACCGGGGGCGGCGTGAGTGGCCGTTGTCCTGGCCGTGGAGGGAGTGGTGGCGGGGYAGGTGCCCGTGGCTCTGGCTCCGGCTGCGGTTCCGGCTCTGGCGCGGCCGGTGGCGGGACGTCTGAAACTCCCAGACCGGCATCAACCTTTGGCTCCTCTCTCAACGGTTCTGGGATCATCTAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29102</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>62692</contig_pos>
        <strand>+</strand>
        <context>AGTTAGTAAA[A/G]AATAGTGAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTCCAGTTTCAGCACATGCTGACTGCCATTCTCTGCGTTAGTTAGTAAA</left_flank>
        <right_flank>AATAGTGAACTTGAAAAATGCTTGTAAGACAGCTCGTAATTACCTCGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCATTCAAATCATATCTAAACTAGTAAAGTCTAAGAAATTTCGTCTTTATCTATGGAATCTGAAGATAGAGCGTAATCAAGAACGTAACCTGACCAACATTGAAATGGTATTAAATAGGCATAATCATTATATTCTAGTTTCCATTTTACAGACAGTTTTGCGCGCAGCGGTCGCATACGTCTACCGTGGAAAGGAACTGATTGTGAGTTGAAGTTTTCAGTAAAAGGAATACTCAAAAACAGGCCAAAACAAGCCGATAATTGTTTTAACTTCTTAAAATATGTATGATAGATCACAACAAGTGCTAGTAGACGACGTTATTCGAAAAACGGTGTCTTGCCAACGAGAAAAGTCAAGATTTTAAAAACATGTGCCCAAACACCATGGTCCGTTTTTCATTCAGCCTGTATTTTCTTCTGAAGCAAGACACAAGGCATCAAAGAGTGTCCAGTTTCAGCACATGCTGACTGCCATTCTCTGCGTTAGTTAGTAAAAAATAGTGAACTTGAAAAATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTG</canonical>
            <polymorphic>TTTTTCATTCAAATCATATCTAAACTAGTAAAGTCTAAGAAATTTCGTCTTTATCTATGGAATCTGAAGATAGAGCGTAATCAAGAACGTAACCTGACCAACATTGAAATGGTATTAAATAGGCATAATCATTATATTCTAGTTTCCATTTTACAGACAGTTTTGCGCGCAGCGGTCGCATACGTCTACCGTGGAAAGGAACTGATTGTGAGTTGAAGTTTTCAGTAAAAGGAATACTCAAAAACAGGCCAAAACAAGCCGATAATTGTTTTAACTTCTTAAAATATGTATGATAGATCACAACAAGTGCTAGTAGACGACGTTATTCGAAAAACGGTGTCTTGCCAACGAGAAAAGTCAAGATTTTAAAAACATGTGCCCAAACACCATGGTCCGTTTTTCATTCAGCCTGTATTTTCTTCTGAAGCAAGACACAAGGCATCAAAGAGTGTCCAGTTTCAGCACATGCTGACTGCCATTCTCTGCGTTAGTTAGTAAARAATAGTGAACTTGAAAAATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGCTAGTAGACGACGTTATTC</pcr_primer_p1>
		<pcr_primer_p2>AATAGGTGCTTAAACGAGGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AGTGCTAGTAGACGACGTTATTCGAAAAACGGTGTCTTGCCAACGAGAAAAGTCAAGATTTTAAAAACATGTGCCCAAACACCATGGTCCGTTTTTCATTCAGCCTGTATTTTCTTCTGAAGCAAGACACAAGGCATCAAAGAGTGTCCAGTTTCAGCACATGCTGACTGCCATTCTCTGCGTTAGTTAGTAAAAAATAGTGAACTTGAAAAATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATT</canonical_amplicon>
		<polymorphic_amplicon>AGTGCTAGTAGACGACGTTATTCGAAAAACGGTGTCTTGCCAACGAGAAAAGTCAAGATTTTAAAAACATGTGCCCAAACACCATGGTCCGTTTTTCATTCAGCCTGTATTTTCTTCTGAAGCAAGACACAAGGCATCAAAGAGTGTCCAGTTTCAGCACATGCTGACTGCCATTCTCTGCGTTAGTTAGTAAARAATAGTGAACTTGAAAAATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29103</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>62781</contig_pos>
        <strand>+</strand>
        <context>GGTTTTCAGM[A/C]GCAGCGCCGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGA</left_flank>
        <right_flank>GCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACCTGACCAACATTGAAATGGTATTAAATAGGCATAATCATTATATTCTAGTTTCCATTTTACAGACAGTTTTGCGCGCAGCGGTCGCATACGTCTACCGTGGAAAGGAACTGATTGTGAGTTGAAGTTTTCAGTAAAAGGAATACTCAAAAACAGGCCAAAACAAGCCGATAATTGTTTTAACTTCTTAAAATATGTATGATAGATCACAACAAGTGCTAGTAGACGACGTTATTCGAAAAACGGTGTCTTGCCAACGAGAAAAGTCAAGATTTTAAAAACATGTGCCCAAACACCATGGTCCGTTTTTCATTCAGCCTGTATTTTCTTCTGAAGCAAGACACAAGGCATCAAAGAGTGTCCAGTTTCAGCACATGCTGACTGCCATTCTCTGCGTTAGTTAGTAAAAAATAGTGAACTTGAAAAATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTGAAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTACAGAAT</canonical>
            <polymorphic>TAACCTGACCAACATTGAAATGGTATTAAATAGGCATAATCATTATATTCTAGTTTCCATTTTACAGACAGTTTTGCGCGCAGCGGTCGCATACGTCTACCGTGGAAAGGAACTGATTGTGAGTTGAAGTTTTCAGTAAAAGGAATACTCAAAAACAGGCCAAAACAAGCCGATAATTGTTTTAACTTCTTAAAATATGTATGATAGATCACAACAAGTGCTAGTAGACGACGTTATTCGAAAAACGGTGTCTTGCCAACGAGAAAAGTCAAGATTTTAAAAACATGTGCCCAAACACCATGGTCCGTTTTTCATTCAGCCTGTATTTTCTTCTGAAGCAAGACACAAGGCATCAAAGAGTGTCCAGTTTCAGCACATGCTGACTGCCATTCTCTGCGTTAGTTAGTAAAAAATAGTGAACTTGAAAAATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAMGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTGAAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTACAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGCTTGTAAGACAGCTCGTA</pcr_primer_p1>
		<pcr_primer_p2>GCTTCAATCATCTTGTTGTAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGC</canonical_amplicon>
		<polymorphic_amplicon>ATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAMGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29104</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>62971</contig_pos>
        <strand>+</strand>
        <context>TGGAAGCTTT[A/G]TTcctaaacc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTT</left_flank>
        <right_flank>TTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAATATGTATGATAGATCACAACAAGTGCTAGTAGACGACGTTATTCGAAAAACGGTGTCTTGCCAACGAGAAAAGTCAAGATTTTAAAAACATGTGCCCAAACACCATGGTCCGTTTTTCATTCAGCCTGTATTTTCTTCTGAAGCAAGACACAAGGCATCAAAGAGTGTCCAGTTTCAGCACATGCTGACTGCCATTCTCTGCGTTAGTTAGTAAAAAATAGTGAACTTGAAAAATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTGAAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTACAGAATGTTGAAAATCCGAGTTTCAAAATTTCGGAATTTCTGTATGTTCCGATTTTTGAAACTGTTTTTCATCAATAAGAAAAATTGGAAAAAAATTGACGAACACTCCTGATTAAAACGAAAAAAGTCTCCTTTTACCACCTAGATTGATATTCCTATTGTTTCTGAATTTTTTCTGAAGTTTGAAGTCGTTAAC</canonical>
            <polymorphic>TAAAATATGTATGATAGATCACAACAAGTGCTAGTAGACGACGTTATTCGAAAAACGGTGTCTTGCCAACGAGAAAAGTCAAGATTTTAAAAACATGTGCCCAAACACCATGGTCCGTTTTTCATTCAGCCTGTATTTTCTTCTGAAGCAAGACACAAGGCATCAAAGAGTGTCCAGTTTCAGCACATGCTGACTGCCATTCTCTGCGTTAGTTAGTAAAAAATAGTGAACTTGAAAAATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTTRTTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTGAAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTACAGAATGTTGAAAATCCGAGTTTCAAAATTTCGGAATTTCTGTATGTTCCGATTTTTGAAACTGTTTTTCATCAATAAGAAAAATTGGAAAAAAATTGACGAACACTCCTGATTAAAACGAAAAAAGTCTCCTTTTACCACCTAGATTGATATTCCTATTGTTTCTGAATTTTTTCTGAAGTTTGAAGTCGTTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCTGGTATGAGACGCTAGA</pcr_primer_p1>
		<pcr_primer_p2>CAAAATCAAACTTTATAAACAACAA</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>GTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTG</canonical_amplicon>
		<polymorphic_amplicon>GTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTTRTTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29105</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>63038</contig_pos>
        <strand></strand>
        <context>aatttgtcaa[T/A]taataaatta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAA</left_flank>
        <right_flank>TAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACGAGAAAAGTCAAGATTTTAAAAACATGTGCCCAAACACCATGGTCCGTTTTTCATTCAGCCTGTATTTTCTTCTGAAGCAAGACACAAGGCATCAAAGAGTGTCCAGTTTCAGCACATGCTGACTGCCATTCTCTGCGTTAGTTAGTAAAAAATAGTGAACTTGAAAAATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTGAAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTACAGAATGTTGAAAATCCGAGTTTCAAAATTTCGGAATTTCTGTATGTTCCGATTTTTGAAACTGTTTTTCATCAATAAGAAAAATTGGAAAAAAATTGACGAACACTCCTGATTAAAACGAAAAAAGTCTCCTTTTACCACCTAGATTGATATTCCTATTGTTTCTGAATTTTTTCTGAAGTTTGAAGTCGTTAACAAATGACTTCACCAATTTTCACACTGTTTGCTGAAGGTCACATATTCACGGTTAAATTTTAAATTAT</canonical>
            <polymorphic>AACGAGAAAAGTCAAGATTTTAAAAACATGTGCCCAAACACCATGGTCCGTTTTTCATTCAGCCTGTATTTTCTTCTGAAGCAAGACACAAGGCATCAAAGAGTGTCCAGTTTCAGCACATGCTGACTGCCATTCTCTGCGTTAGTTAGTAAAAAATAGTGAACTTGAAAAATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAAWTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTGAAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTACAGAATGTTGAAAATCCGAGTTTCAAAATTTCGGAATTTCTGTATGTTCCGATTTTTGAAACTGTTTTTCATCAATAAGAAAAATTGGAAAAAAATTGACGAACACTCCTGATTAAAACGAAAAAAGTCTCCTTTTACCACCTAGATTGATATTCCTATTGTTTCTGAATTTTTTCTGAAGTTTGAAGTCGTTAACAAATGACTTCACCAATTTTCACACTGTTTGCTGAAGGTCACATATTCACGGTTAAATTTTAAATTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 489 11</canonical_bands>
                <polymorphic_bands>511 489</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>297 220 183 119 79 56 20 11 8 7</canonical_bands>
                <polymorphic_bands>308 220 183 119 79 56 20 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>267 191 74 69 50 48 42 41 41 34 33 31 31 11 8 8 8 7 6</canonical_bands>
                <polymorphic_bands>267 191 74 69 50 48 42 41 41 34 33 31 31 16 11 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGATGATTGAAGCAGTGGA</pcr_primer_p1>
		<pcr_primer_p2>CAAAATCAAACTTTATAAACAACAA</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>AAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTG</canonical_amplicon>
		<polymorphic_amplicon>AAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAAWTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29106</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>63053</contig_pos>
        <strand></strand>
        <context>aaattattaa[T/C]cataatatcg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAA</left_flank>
        <right_flank>CATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTTAAAAACATGTGCCCAAACACCATGGTCCGTTTTTCATTCAGCCTGTATTTTCTTCTGAAGCAAGACACAAGGCATCAAAGAGTGTCCAGTTTCAGCACATGCTGACTGCCATTCTCTGCGTTAGTTAGTAAAAAATAGTGAACTTGAAAAATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTGAAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTACAGAATGTTGAAAATCCGAGTTTCAAAATTTCGGAATTTCTGTATGTTCCGATTTTTGAAACTGTTTTTCATCAATAAGAAAAATTGGAAAAAAATTGACGAACACTCCTGATTAAAACGAAAAAAGTCTCCTTTTACCACCTAGATTGATATTCCTATTGTTTCTGAATTTTTTCTGAAGTTTGAAGTCGTTAACAAATGACTTCACCAATTTTCACACTGTTTGCTGAAGGTCACATATTCACGGTTAAATTTTAAATTATTCTAATTTCAAAATC</canonical>
            <polymorphic>GATTTTAAAAACATGTGCCCAAACACCATGGTCCGTTTTTCATTCAGCCTGTATTTTCTTCTGAAGCAAGACACAAGGCATCAAAGAGTGTCCAGTTTCAGCACATGCTGACTGCCATTCTCTGCGTTAGTTAGTAAAAAATAGTGAACTTGAAAAATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAAYCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTGAAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTACAGAATGTTGAAAATCCGAGTTTCAAAATTTCGGAATTTCTGTATGTTCCGATTTTTGAAACTGTTTTTCATCAATAAGAAAAATTGGAAAAAAATTGACGAACACTCCTGATTAAAACGAAAAAAGTCTCCTTTTACCACCTAGATTGATATTCCTATTGTTTCTGAATTTTTTCTGAAGTTTGAAGTCGTTAACAAATGACTTCACCAATTTTCACACTGTTTGCTGAAGGTCACATATTCACGGTTAAATTTTAAATTATTCTAATTTCAAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>504 485 11</canonical_bands>
                <polymorphic_bands>515 485</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGATGATTGAAGCAGTGGA</pcr_primer_p1>
		<pcr_primer_p2>CAAAATCAAACTTTATAAACAACAA</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>AAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTG</canonical_amplicon>
		<polymorphic_amplicon>AAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAAYCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29107</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>63090</contig_pos>
        <strand></strand>
        <context>tgacaaattg[T/C]tratatctct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTG</left_flank>
        <right_flank>TGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCATTCAGCCTGTATTTTCTTCTGAAGCAAGACACAAGGCATCAAAGAGTGTCCAGTTTCAGCACATGCTGACTGCCATTCTCTGCGTTAGTTAGTAAAAAATAGTGAACTTGAAAAATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTGAAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTACAGAATGTTGAAAATCCGAGTTTCAAAATTTCGGAATTTCTGTATGTTCCGATTTTTGAAACTGTTTTTCATCAATAAGAAAAATTGGAAAAAAATTGACGAACACTCCTGATTAAAACGAAAAAAGTCTCCTTTTACCACCTAGATTGATATTCCTATTGTTTCTGAATTTTTTCTGAAGTTTGAAGTCGTTAACAAATGACTTCACCAATTTTCACACTGTTTGCTGAAGGTCACATATTCACGGTTAAATTTTAAATTATTCTAATTTCAAAATCGATATAATAGAGCTTTCAAGAAAAATGAATTTGAATG</canonical>
            <polymorphic>TTTCATTCAGCCTGTATTTTCTTCTGAAGCAAGACACAAGGCATCAAAGAGTGTCCAGTTTCAGCACATGCTGACTGCCATTCTCTGCGTTAGTTAGTAAAAAATAGTGAACTTGAAAAATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGYTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTGAAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTACAGAATGTTGAAAATCCGAGTTTCAAAATTTCGGAATTTCTGTATGTTCCGATTTTTGAAACTGTTTTTCATCAATAAGAAAAATTGGAAAAAAATTGACGAACACTCCTGATTAAAACGAAAAAAGTCTCCTTTTACCACCTAGATTGATATTCCTATTGTTTCTGAATTTTTTCTGAAGTTTGAAGTCGTTAACAAATGACTTCACCAATTTTCACACTGTTTGCTGAAGGTCACATATTCACGGTTAAATTTTAAATTATTCTAATTTCAAAATCGATATAATAGAGCTTTCAAGAAAAATGAATTTGAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGATGATTGAAGCAGTGGA</pcr_primer_p1>
		<pcr_primer_p2>CAAAATCAAACTTTATAAACAACAA</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>AAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTG</canonical_amplicon>
		<polymorphic_amplicon>AAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGYTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29108</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>63092</contig_pos>
        <strand></strand>
        <context>acaaattgyt[G/A]atatctctta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTT</left_flank>
        <right_flank>ATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATTCAGCCTGTATTTTCTTCTGAAGCAAGACACAAGGCATCAAAGAGTGTCCAGTTTCAGCACATGCTGACTGCCATTCTCTGCGTTAGTTAGTAAAAAATAGTGAACTTGAAAAATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTGAAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTACAGAATGTTGAAAATCCGAGTTTCAAAATTTCGGAATTTCTGTATGTTCCGATTTTTGAAACTGTTTTTCATCAATAAGAAAAATTGGAAAAAAATTGACGAACACTCCTGATTAAAACGAAAAAAGTCTCCTTTTACCACCTAGATTGATATTCCTATTGTTTCTGAATTTTTTCTGAAGTTTGAAGTCGTTAACAAATGACTTCACCAATTTTCACACTGTTTGCTGAAGGTCACATATTCACGGTTAAATTTTAAATTATTCTAATTTCAAAATCGATATAATAGAGCTTTCAAGAAAAATGAATTTGAATGAG</canonical>
            <polymorphic>TCATTCAGCCTGTATTTTCTTCTGAAGCAAGACACAAGGCATCAAAGAGTGTCCAGTTTCAGCACATGCTGACTGCCATTCTCTGCGTTAGTTAGTAAAAAATAGTGAACTTGAAAAATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTRATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTGAAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTACAGAATGTTGAAAATCCGAGTTTCAAAATTTCGGAATTTCTGTATGTTCCGATTTTTGAAACTGTTTTTCATCAATAAGAAAAATTGGAAAAAAATTGACGAACACTCCTGATTAAAACGAAAAAAGTCTCCTTTTACCACCTAGATTGATATTCCTATTGTTTCTGAATTTTTTCTGAAGTTTGAAGTCGTTAACAAATGACTTCACCAATTTTCACACTGTTTGCTGAAGGTCACATATTCACGGTTAAATTTTAAATTATTCTAATTTCAAAATCGATATAATAGAGCTTTCAAGAAAAATGAATTTGAATGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>498 429 73</canonical_bands>
                <polymorphic_bands>571 429</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGATGATTGAAGCAGTGGA</pcr_primer_p1>
		<pcr_primer_p2>CAAAATCAAACTTTATAAACAACAA</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>AAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTG</canonical_amplicon>
		<polymorphic_amplicon>AAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTRATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29109</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>63125</contig_pos>
        <strand></strand>
        <context>taattgagct[C/T]aaagttgacG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCT</left_flank>
        <right_flank>AAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAAGGCATCAAAGAGTGTCCAGTTTCAGCACATGCTGACTGCCATTCTCTGCGTTAGTTAGTAAAAAATAGTGAACTTGAAAAATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTGAAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTACAGAATGTTGAAAATCCGAGTTTCAAAATTTCGGAATTTCTGTATGTTCCGATTTTTGAAACTGTTTTTCATCAATAAGAAAAATTGGAAAAAAATTGACGAACACTCCTGATTAAAACGAAAAAAGTCTCCTTTTACCACCTAGATTGATATTCCTATTGTTTCTGAATTTTTTCTGAAGTTTGAAGTCGTTAACAAATGACTTCACCAATTTTCACACTGTTTGCTGAAGGTCACATATTCACGGTTAAATTTTAAATTATTCTAATTTCAAAATCGATATAATAGAGCTTTCAAGAAAAATGAATTTGAATGAGTCAGAAACAAAAATGAATTTTGGAACAATTCAA</canonical>
            <polymorphic>ACAAGGCATCAAAGAGTGTCCAGTTTCAGCACATGCTGACTGCCATTCTCTGCGTTAGTTAGTAAAAAATAGTGAACTTGAAAAATGCTTGTAAGACAGCTCGTAATTACCTCGTTTAAGCACCTATTTGCGAGTATAAAAAACCGGTTTTCAGAGGCAGCGCCGTCACTTAGAGCCGCTCGCACAGCCTCTGTTGAACGCTTTCCACAAAGCTCTCAACATCGCAGATGTTCTGGAGAGTGTTGAGACTCGGGCTGCCATGGAGGATGAGCATCTTTTTGCCCGGTTCTGGTATGAGACGCTAGAGCGCTACTACAACAAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTYAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTGGTTTATAAATTTTGAAACCAATCAAAACTTCAGTAATGTTCGGTATGGTTTTTTCAGAATTTTACAGAATGTTGAAAATCCGAGTTTCAAAATTTCGGAATTTCTGTATGTTCCGATTTTTGAAACTGTTTTTCATCAATAAGAAAAATTGGAAAAAAATTGACGAACACTCCTGATTAAAACGAAAAAAGTCTCCTTTTACCACCTAGATTGATATTCCTATTGTTTCTGAATTTTTTCTGAAGTTTGAAGTCGTTAACAAATGACTTCACCAATTTTCACACTGTTTGCTGAAGGTCACATATTCACGGTTAAATTTTAAATTATTCTAATTTCAAAATCGATATAATAGAGCTTTCAAGAAAAATGAATTTGAATGAGTCAGAAACAAAAATGAATTTTGGAACAATTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGATGATTGAAGCAGTGGA</pcr_primer_p1>
		<pcr_primer_p2>CAAAATCAAACTTTATAAACAACAA</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>AAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTCAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTG</canonical_amplicon>
		<polymorphic_amplicon>AAGATGATTGAAGCAGTGGAAGCTTTATTCCTAAACCGTCAACTTTGACTTCAATTATCCCAAGTTCTGTGAAAGATATCAAAAATTTGTCAATTAATAAATTATTAATCATAATATCGCCAATATTTTATCAGTTGACAAATTGTTGATATCTCTTACAGGAGTAAAGATAATTGAGCTYAAAGTTGACGTCTTCTATTCGAAGAAATACGGAAACTATTTTTTAATGCAAAAATAATAAATTGTTGTTTATAAAGTTTGATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29110</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>67398</contig_pos>
        <strand></strand>
        <context>tggccgtggt[C/T]caggacgtgg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTGTGGCCGTGGCGGTAGCGGAGGCGGCGTCAGTGGCCGTGGCCGTGGT</left_flank>
        <right_flank>CAGGACGTGGAGGTAGTGGTGGCGGGGTCGCTGGCCGTGGCTCTGGCTCC</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAAATTCTGAAAATTTGAAATACAGAATTTTGCCATCTCAAATTTTCAAATATCAAAATCCATTTCAAAACTGACAACTACAAGACTGTTAAAAACTAAATTTTGCTCTTCTTAAAACTGGTCATTTATCAACTTGAATTCTAGCACTAGTCATTCGCTGCAAATTTGAAAAACCCGGTTTTAAAATAGTTTGTAGAAAAATTGCAATACGCTGCCTTTCAATTAATAAATCTTACAATGAGGCGCCTACTAAAACGGTCAATTGGCGAACAAAATCTTTCTCACCTGCTGGTCTCCTCTAGCTCTTCTGAACTGATGAATCCATTCCATATTCTGCGGAAGGCCCAGTGCTCTTGGTGGGGGCGAATCCTCCTGAAAAAGTTACAGATGAAAATGGTCTCAATTTTTCACAATCTGAACTCACCCTAGCTCTCACGCGAGCCTGAGCGTGTGGCCGTGGCGGTAGCGGAGGCGGCGTCAGTGGCCGTGGCCGTGGTCCAGGACGTGGAGGTAGTGGTGGCGGGGTCGCTGGCCGTGGCTCTGGCTCCGGCTGCAGTTCCGGCTCTGGCGCTGCCGGTGGCGGGAAGTCTGGAACTCCTAGACCGGGAGCGGCATCAACCTTTGGCTCCTCTCTCAATGGTTCTGGGGTCATCTAAAATAATGAAATAAATTGGAAATGAACTGAAAATAAAGTTTTTAGGCTCTATCAGGTTTTCCAAAAACGGATTGAAAAGAAAAACTGAGAATTTTTGTTCGAAGCAATATCAATACTTATTCAATCATAAAATTTCTGTGAACGTAACAAACACACTACCTAACATATAAGAGCGGTATAAGAACAGATGAAAAGAGACAAGTCTGTTATCAAAATTGCATAGTCTCTTATTTCACCTACAGCTTTGTATTCAGCTTTCGACGGACCACAATTTAAGGTAAGAGCAGTATTGGTTTTCTATTCTACCAATACATTCCTCTAGTGGAATACTTCAAATCCCAGT</canonical>
            <polymorphic>CAGAAATTCTGAAAATTTGAAATACAGAATTTTGCCATCTCAAATTTTCAAATATCAAAATCCATTTCAAAACTGACAACTACAAGACTGTTAAAAACTAAATTTTGCTCTTCTTAAAACTGGTCATTTATCAACTTGAATTCTAGCACTAGTCATTCGCTGCAAATTTGAAAAACCCGGTTTTAAAATAGTTTGTAGAAAAATTGCAATACGCTGCCTTTCAATTAATAAATCTTACAATGAGGCGCCTACTAAAACGGTCAATTGGCGAACAAAATCTTTCTCACCTGCTGGTCTCCTCTAGCTCTTCTGAACTGATGAATCCATTCCATATTCTGCGGAAGGCCCAGTGCTCTTGGTGGGGGCGAATCCTCCTGAAAAAGTTACAGATGAAAATGGTCTCAATTTTTCACAATCTGAACTCACCCTAGCTCTCACGCGAGCCTGAGCGTGTGGCCGTGGCGGTAGCGGAGGCGGCGTCAGTGGCCGTGGCCGTGGTYCAGGACGTGGAGGTAGTGGTGGCGGGGTCGCTGGCCGTGGCTCTGGCTCCGGCTGCAGTTCCGGCTCTGGCGCTGCCGGTGGCGGGAAGTCTGGAACTCCTAGACCGGGAGCGGCATCAACCTTTGGCTCCTCTCTCAATGGTTCTGGGGTCATCTAAAATAATGAAATAAATTGGAAATGAACTGAAAATAAAGTTTTTAGGCTCTATCAGGTTTTCCAAAAACGGATTGAAAAGAAAAACTGAGAATTTTTGTTCGAAGCAATATCAATACTTATTCAATCATAAAATTTCTGTGAACGTAACAAACACACTACCTAACATATAAGAGCGGTATAAGAACAGATGAAAAGAGACAAGTCTGTTATCAAAATTGCATAGTCTCTTATTTCACCTACAGCTTTGTATTCAGCTTTCGACGGACCACAATTTAAGGTAAGAGCAGTATTGGTTTTCTATTCTACCAATACATTCCTCTAGTGGAATACTTCAAATCCCAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNTGG</site>
                <isoschizomers>
                    <enzyme>AccB7I</enzyme>
                    <enzyme>PflBI</enzyme>
                    <enzyme>PflMI</enzyme>
                    <enzyme>Van91I</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>497 423 80</canonical_bands>
                <polymorphic_bands>920 80</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>423 344 153 80</canonical_bands>
                <polymorphic_bands>576 344 80</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>394 324 177 105</canonical_bands>
                <polymorphic_bands>429 394 177</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>506 395 76 23</canonical_bands>
                <polymorphic_bands>582 395 23</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTGAACTCACCCTAGCTCT</pcr_primer_p1>
		<pcr_primer_p2>ATTATTTTAGATGACCCCAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTGAACTCACCCTAGCTCTCACGCGAGCCTGAGCGTGTGGCCGTGGCGGTAGCGGAGGCGGCGTCAGTGGCCGTGGCCGTGGTCCAGGACGTGGAGGTAGTGGTGGCGGGGTCGCTGGCCGTGGCTCTGGCTCCGGCTGCAGTTCCGGCTCTGGCGCTGCCGGTGGCGGGAAGTCTGGAACTCCTAGACCGGGAGCGGCATCAACCTTTGGCTCCTCTCTCAATGGTTCTGGGGTCATCTAAAATAAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTGAACTCACCCTAGCTCTCACGCGAGCCTGAGCGTGTGGCCGTGGCGGTAGCGGAGGCGGCGTCAGTGGCCGTGGCCGTGGTYCAGGACGTGGAGGTAGTGGTGGCGGGGTCGCTGGCCGTGGCTCTGGCTCCGGCTGCAGTTCCGGCTCTGGCGCTGCCGGTGGCGGGAAGTCTGGAACTCCTAGACCGGGAGCGGCATCAACCTTTGGCTCCTCTCTCAATGGTTCTGGGGTCATCTAAAATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29111</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>68869</contig_pos>
        <strand></strand>
        <context>ctctctctct[T/C]tctctttytc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTTAGTCACACTGTTTGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT</left_flank>
        <right_flank>TCTCTTTCTCTCTCTCTTTATTGGAATGGGGTACTGTAATTTTATGAGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACAAAATGTTCAGGTTCCCTTGTTATGTCTCAGAAAATTTCAAGAAATTTGAAACAAAGACAGAAATTTTTGAAGTTACGAAAAAATCCTATTGCATCTGTTCAAATTTTATCTCAATATCAAATTCATATCCTATCTCAAAAATTAATTTGTTCTAATAACAGTAAGAACTCCGTTGGAAGCGAAAATCCTAGGGCTTTCATTCCAAAATATTGTTTAATACAGGTTTAGGGCATTTTCTCATACACAATTTCATTAAGGGGAGAGCAAAAACTGCAAAGAAAACCAGCGGCACCTCACGTTTTGTGTTGCGCAAGATAAGCGCGAATTGGCAAAAAATGTAGGAAAAGAAGAGAAAAATAAAGAAATGAGTGTTGACAACATTCAAAAAGGCCATCGTAGTACCAGACAGTGTCGTGCTCCGCCTCTTTCTCTTTTTCTTAGTGATGTTAGTCACACTGTTTGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTTTCTCTCTCTCTTTATTGGAATGGGGTACTGTAATTTTATGAGATGATGAATGACATAAAATTTGCACTTTTGAAACAATTTAATTTATACTTTTGGAACTTTCGAGAAATGCATTGTTCTCTTTTCTTCATTGAAATTATGTTTAAACAAGTGAAATTTCAGAAATCTCTTCTCCATTTACAGAATCTGAAGATGGAGTGTAATCAAAAGCGTAGCCTCACCGATATTGAAATGATATGAAATAGGCATAATCGTTATTTTCTAGTTTCTATTTTACAGACAGTTGTGCGCGCAGCGGTTGGCTACAACAACCGTAAAAAAGAGCTGATTGTGAGTTAAAGTTTCCAGAAAAAGAACACTCAAAAACAGGCTAAAACAAGCTGAAAATTTTTCTTTGATGTTTCGGTCCCCAGAAAAAATGATGGTATTTAGAAAACAGTTCAGTCCTTAAGACGATAATCCTAACTCGTTTCGTTTCAGTTACGATTTGTCTT</canonical>
            <polymorphic>CACAAAATGTTCAGGTTCCCTTGTTATGTCTCAGAAAATTTCAAGAAATTTGAAACAAAGACAGAAATTTTTGAAGTTACGAAAAAATCCTATTGCATCTGTTCAAATTTTATCTCAATATCAAATTCATATCCTATCTCAAAAATTAATTTGTTCTAATAACAGTAAGAACTCCGTTGGAAGCGAAAATCCTAGGGCTTTCATTCCAAAATATTGTTTAATACAGGTTTAGGGCATTTTCTCATACACAATTTCATTAAGGGGAGAGCAAAAACTGCAAAGAAAACCAGCGGCACCTCACGTTTTGTGTTGCGCAAGATAAGCGCGAATTGGCAAAAAATGTAGGAAAAGAAGAGAAAAATAAAGAAATGAGTGTTGACAACATTCAAAAAGGCCATCGTAGTACCAGACAGTGTCGTGCTCCGCCTCTTTCTCTTTTTCTTAGTGATGTTAGTCACACTGTTTGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTYTCTCTTTCTCTCTCTCTTTATTGGAATGGGGTACTGTAATTTTATGAGATGATGAATGACATAAAATTTGCACTTTTGAAACAATTTAATTTATACTTTTGGAACTTTCGAGAAATGCATTGTTCTCTTTTCTTCATTGAAATTATGTTTAAACAAGTGAAATTTCAGAAATCTCTTCTCCATTTACAGAATCTGAAGATGGAGTGTAATCAAAAGCGTAGCCTCACCGATATTGAAATGATATGAAATAGGCATAATCGTTATTTTCTAGTTTCTATTTTACAGACAGTTGTGCGCGCAGCGGTTGGCTACAACAACCGTAAAAAAGAGCTGATTGTGAGTTAAAGTTTCCAGAAAAAGAACACTCAAAAACAGGCTAAAACAAGCTGAAAATTTTTCTTTGATGTTTCGGTCCCCAGAAAAAATGATGGTATTTAGAAAACAGTTCAGTCCTTAAGACGATAATCCTAACTCGTTTCGTTTCAGTTACGATTTGTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGTAGGAAAAGAAGAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TAAATTGTTTCAAAAGTGCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAATGTAGGAAAAGAAGAGAAAAATAAAGAAATGAGTGTTGACAACATTCAAAAAGGCCATCGTAGTACCAGACAGTGTCGTGCTCCGCCTCTTTCTCTTTTTCTTAGTGATGTTAGTCACACTGTTTGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTTTCTCTCTCTCTTTATTGGAATGGGGTACTGTAATTTTATGAGATGATGAATGACATAAAATTTGCACTTTTGAAACAATTTA</canonical_amplicon>
		<polymorphic_amplicon>AAATGTAGGAAAAGAAGAGAAAAATAAAGAAATGAGTGTTGACAACATTCAAAAAGGCCATCGTAGTACCAGACAGTGTCGTGCTCCGCCTCTTTCTCTTTTTCTTAGTGATGTTAGTCACACTGTTTGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTYTCTCTTTCTCTCTCTCTTTATTGGAATGGGGTACTGTAATTTTATGAGATGATGAATGACATAAAATTTGCACTTTTGAAACAATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29112</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>68877</contig_pos>
        <strand></strand>
        <context>ctytctcttt[C/T]tctctctctT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACTGTTTGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTTT</left_flank>
        <right_flank>TCTCTCTCTTTATTGGAATGGGGTACTGTAATTTTATGAGATGATGAATG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCAGGTTCCCTTGTTATGTCTCAGAAAATTTCAAGAAATTTGAAACAAAGACAGAAATTTTTGAAGTTACGAAAAAATCCTATTGCATCTGTTCAAATTTTATCTCAATATCAAATTCATATCCTATCTCAAAAATTAATTTGTTCTAATAACAGTAAGAACTCCGTTGGAAGCGAAAATCCTAGGGCTTTCATTCCAAAATATTGTTTAATACAGGTTTAGGGCATTTTCTCATACACAATTTCATTAAGGGGAGAGCAAAAACTGCAAAGAAAACCAGCGGCACCTCACGTTTTGTGTTGCGCAAGATAAGCGCGAATTGGCAAAAAATGTAGGAAAAGAAGAGAAAAATAAAGAAATGAGTGTTGACAACATTCAAAAAGGCCATCGTAGTACCAGACAGTGTCGTGCTCCGCCTCTTTCTCTTTTTCTTAGTGATGTTAGTCACACTGTTTGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTTTCTCTCTCTCTTTATTGGAATGGGGTACTGTAATTTTATGAGATGATGAATGACATAAAATTTGCACTTTTGAAACAATTTAATTTATACTTTTGGAACTTTCGAGAAATGCATTGTTCTCTTTTCTTCATTGAAATTATGTTTAAACAAGTGAAATTTCAGAAATCTCTTCTCCATTTACAGAATCTGAAGATGGAGTGTAATCAAAAGCGTAGCCTCACCGATATTGAAATGATATGAAATAGGCATAATCGTTATTTTCTAGTTTCTATTTTACAGACAGTTGTGCGCGCAGCGGTTGGCTACAACAACCGTAAAAAAGAGCTGATTGTGAGTTAAAGTTTCCAGAAAAAGAACACTCAAAAACAGGCTAAAACAAGCTGAAAATTTTTCTTTGATGTTTCGGTCCCCAGAAAAAATGATGGTATTTAGAAAACAGTTCAGTCCTTAAGACGATAATCCTAACTCGTTTCGTTTCAGTTACGATTTGTCTTTTTTTCAT</canonical>
            <polymorphic>GTTCAGGTTCCCTTGTTATGTCTCAGAAAATTTCAAGAAATTTGAAACAAAGACAGAAATTTTTGAAGTTACGAAAAAATCCTATTGCATCTGTTCAAATTTTATCTCAATATCAAATTCATATCCTATCTCAAAAATTAATTTGTTCTAATAACAGTAAGAACTCCGTTGGAAGCGAAAATCCTAGGGCTTTCATTCCAAAATATTGTTTAATACAGGTTTAGGGCATTTTCTCATACACAATTTCATTAAGGGGAGAGCAAAAACTGCAAAGAAAACCAGCGGCACCTCACGTTTTGTGTTGCGCAAGATAAGCGCGAATTGGCAAAAAATGTAGGAAAAGAAGAGAAAAATAAAGAAATGAGTGTTGACAACATTCAAAAAGGCCATCGTAGTACCAGACAGTGTCGTGCTCCGCCTCTTTCTCTTTTTCTTAGTGATGTTAGTCACACTGTTTGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTTTYTCTCTCTCTTTATTGGAATGGGGTACTGTAATTTTATGAGATGATGAATGACATAAAATTTGCACTTTTGAAACAATTTAATTTATACTTTTGGAACTTTCGAGAAATGCATTGTTCTCTTTTCTTCATTGAAATTATGTTTAAACAAGTGAAATTTCAGAAATCTCTTCTCCATTTACAGAATCTGAAGATGGAGTGTAATCAAAAGCGTAGCCTCACCGATATTGAAATGATATGAAATAGGCATAATCGTTATTTTCTAGTTTCTATTTTACAGACAGTTGTGCGCGCAGCGGTTGGCTACAACAACCGTAAAAAAGAGCTGATTGTGAGTTAAAGTTTCCAGAAAAAGAACACTCAAAAACAGGCTAAAACAAGCTGAAAATTTTTCTTTGATGTTTCGGTCCCCAGAAAAAATGATGGTATTTAGAAAACAGTTCAGTCCTTAAGACGATAATCCTAACTCGTTTCGTTTCAGTTACGATTTGTCTTTTTTTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGTAGGAAAAGAAGAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TAAATTGTTTCAAAAGTGCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAATGTAGGAAAAGAAGAGAAAAATAAAGAAATGAGTGTTGACAACATTCAAAAAGGCCATCGTAGTACCAGACAGTGTCGTGCTCCGCCTCTTTCTCTTTTTCTTAGTGATGTTAGTCACACTGTTTGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTTTCTCTCTCTCTTTATTGGAATGGGGTACTGTAATTTTATGAGATGATGAATGACATAAAATTTGCACTTTTGAAACAATTTA</canonical_amplicon>
		<polymorphic_amplicon>AAATGTAGGAAAAGAAGAGAAAAATAAAGAAATGAGTGTTGACAACATTCAAAAAGGCCATCGTAGTACCAGACAGTGTCGTGCTCCGCCTCTTTCTCTTTTTCTTAGTGATGTTAGTCACACTGTTTGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTTTYTCTCTCTCTTTATTGGAATGGGGTACTGTAATTTTATGAGATGATGAATGACATAAAATTTGCACTTTTGAAACAATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29113</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>71954</contig_pos>
        <strand>+</strand>
        <context>ggggggtttt[C/T]taAAGACAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTCTCATAGGAGCAGGTATAGGTGAAACTTGACAATTCGGGGGGTTTT</left_flank>
        <right_flank>TAAAGACAGAATCAAGTCTAGCTTATGAAGAAATATCGTTTTTTTTCCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTGAAATCAATAAACTGTAGCTTTTTAGATAACGAAAATTTGAATGAGTCATAATGGGAAAAACAAATTCTGGGACATTTCAAAATCTATGCGAGAGACTGACAGACCTCTGTCATGTGTTTTCGTTAAACTCAGTGCGGCCCGATTGATCCACTTTTGTTGAACAGTCCCATATAATTCATTTTTTACAAAAAAAAAACAAAGAAAATTGGTTTTTCTAGTTTTTCTAGAAAATTAAATGGTTAAAAACAGCTTCAAAGAATTTCATAATTTCTCCATTTCTCAAGATAAGATGCATACCTTCAAACCTGTAAAAGAAGGGCTTCTTATTTTGTTTTAAACGTTGCCTATTTATCTCGGTTCCTGTGAGAAATTTAAAAAATTGTCAACTGATAAAATATTTATCATAATATCAAAAATATTTTATCAGTTGACAGATTCTTGATATCTCTCATAGGAGCAGGTATAGGTGAAACTTGACAATTCGGGGGGTTTTCTAAAGACAGAATCAAGTCTAGCTTATGAAGAAATATCGTTTTTTTTCCCACATTTTCGCTTCAGTTTGTGAAATAATAAGTTTAAAACTTTCTATTCACCAATTTCAGTATTTTCTGGATGTTATTAAATCTTTGCAATGCCCTCAAAATATCCTTAAATAAGAAGATATCGTTAAGTGATCCTTTAAATACCAACTCTATGCGACAAAAGTGTATTTTGGATATACATCTCTATCCGGCTCCTTTTTTAAACTAAAAATCAATGAAATAGAGCTTTCCAGAAAGCAAAAATTTGAATGAGTCATAGAAAAAAAAACAAATTTTGGAACCTTTCAAAATCTATGCGAGAGAGAGAGAGAGAGAGAGGAGAGACAGTTCCATGTCTTAGTCACTAAAACAGACACTTGTTTAGCTTTTCGCAAAAATATCCTCATCCCTGTCCAGCTCGTTGGACTTTTTTTGCCAAATTATCAATTTTAACTTTTCGGCTAACAACGTTT</canonical>
            <polymorphic>ATTTTGAAATCAATAAACTGTAGCTTTTTAGATAACGAAAATTTGAATGAGTCATAATGGGAAAAACAAATTCTGGGACATTTCAAAATCTATGCGAGAGACTGACAGACCTCTGTCATGTGTTTTCGTTAAACTCAGTGCGGCCCGATTGATCCACTTTTGTTGAACAGTCCCATATAATTCATTTTTTACAAAAAAAAAACAAAGAAAATTGGTTTTTCTAGTTTTTCTAGAAAATTAAATGGTTAAAAACAGCTTCAAAGAATTTCATAATTTCTCCATTTCTCAAGATAAGATGCATACCTTCAAACCTGTAAAAGAAGGGCTTCTTATTTTGTTTTAAACGTTGCCTATTTATCTCGGTTCCTGTGAGAAATTTAAAAAATTGTCAACTGATAAAATATTTATCATAATATCAAAAATATTTTATCAGTTGACAGATTCTTGATATCTCTCATAGGAGCAGGTATAGGTGAAACTTGACAATTCGGGGGGTTTTYTAAAGACAGAATCAAGTCTAGCTTATGAAGAAATATCGTTTTTTTTCCCACATTTTCGCTTCAGTTTGTGAAATAATAAGTTTAAAACTTTCTATTCACCAATTTCAGTATTTTCTGGATGTTATTAAATCTTTGCAATGCCCTCAAAATATCCTTAAATAAGAAGATATCGTTAAGTGATCCTTTAAATACCAACTCTATGCGACAAAAGTGTATTTTGGATATACATCTCTATCCGGCTCCTTTTTTAAACTAAAAATCAATGAAATAGAGCTTTCCAGAAAGCAAAAATTTGAATGAGTCATAGAAAAAAAAACAAATTTTGGAACCTTTCAAAATCTATGCGAGAGAGAGAGAGAGAGAGAGGAGAGACAGTTCCATGTCTTAGTCACTAAAACAGACACTTGTTTAGCTTTTCGCAAAAATATCCTCATCCCTGTCCAGCTCGTTGGACTTTTTTTGCCAAATTATCAATTTTAACTTTTCGGCTAACAACGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCCATTTCTCAAGATAAGA</pcr_primer_p1>
		<pcr_primer_p2>ACAAACTGAAGCGAAAATGT</pcr_primer_p2>
		<pcr_amplicon_size>296</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCCATTTCTCAAGATAAGATGCATACCTTCAAACCTGTAAAAGAAGGGCTTCTTATTTTGTTTTAAACGTTGCCTATTTATCTCGGTTCCTGTGAGAAATTTAAAAAATTGTCAACTGATAAAATATTTATCATAATATCAAAAATATTTTATCAGTTGACAGATTCTTGATATCTCTCATAGGAGCAGGTATAGGTGAAACTTGACAATTCGGGGGGTTTTCTAAAGACAGAATCAAGTCTAGCTTATGAAGAAATATCGTTTTTTTTCCCACATTTTCGCTTCAGTTTGT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCCATTTCTCAAGATAAGATGCATACCTTCAAACCTGTAAAAGAAGGGCTTCTTATTTTGTTTTAAACGTTGCCTATTTATCTCGGTTCCTGTGAGAAATTTAAAAAATTGTCAACTGATAAAATATTTATCATAATATCAAAAATATTTTATCAGTTGACAGATTCTTGATATCTCTCATAGGAGCAGGTATAGGTGAAACTTGACAATTCGGGGGGTTTTYTAAAGACAGAATCAAGTCTAGCTTATGAAGAAATATCGTTTTTTTTCCCACATTTTCGCTTCAGTTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29114</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>98237</contig_pos>
        <strand>+</strand>
        <context>ATACCTACGT[A/T]AAAAGCTTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCTCCGTTCATGAACTGTTGTCCCAGGAGTACCGATTGCATACCTACGT</left_flank>
        <right_flank>AAAAGCTTGGTATAGGTGAACCAATCTCCCGATGGAGCATGAAGGAGTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGATTGAGATCATCTGTGACAGATCAGCTGCAACACCTCCTTGCTTCCAAAATTAATAAAGCAATTTTCTGTGGCCCGTAAAAAGACATTTTCTGCGGTAAGTTCTGTTTTTATCAAATCTGAACGGGATGTGTTTGGTGCACGGAGTAGAGGTTCTGGAAGCAAAACGCTCTTCTGAAACCCTCTCTGTATGCTTGGCACTCCTAATCAGATATTTTATTATTTTCCAAAAATCTACTAGGTAATATTTTGTTGATTTTGAATTACAGTATGTGAACCATTCTGTTCATTTTAATATCAACGTGAAAAAATATTCAGAACTTGAAAACAAGGTTCATTTTAAAAATTTGCTCCTTTGCGAGATAATAGAAAAGTTATCGTGAACTTAATGTTTGAAGTTTCTTCCATTGTTGCAATACTTTGAAGCATCAAAATCTAACACCACTGGATCTCCGTTCATGAACTGTTGTCCCAGGAGTACCGATTGCATACCTACGTGAAAAGCTTGGTATAGGTGAACCAATCTCCCGATGGAGCATGAAGGAGTAGGATAAAGTCTTCTGGCCGCACATTTCAGCACACCTTCTTCGCATTTTTGGTATAGAATGGTGTAGTTGACTGGCATCTCACGAAAGCCGCGTTCGAATTCATCAATTTCCGAACATGATTGTCCTATTTCAATAATGTTGGACTAAATGTTCAAAAAACTTTCAAGCAGTTTCGAATTGGACACTCACATCTCGGAAACAAGAGAAAGCGTCTCCGTAAACTTTACTTCCAACGAAATCCGCTGCTTCAAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACATCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGA</canonical>
            <polymorphic>TTGATTGAGATCATCTGTGACAGATCAGCTGCAACACCTCCTTGCTTCCAAAATTAATAAAGCAATTTTCTGTGGCCCGTAAAAAGACATTTTCTGCGGTAAGTTCTGTTTTTATCAAATCTGAACGGGATGTGTTTGGTGCACGGAGTAGAGGTTCTGGAAGCAAAACGCTCTTCTGAAACCCTCTCTGTATGCTTGGCACTCCTAATCAGATATTTTATTATTTTCCAAAAATCTACTAGGTAATATTTTGTTGATTTTGAATTACAGTATGTGAACCATTCTGTTCATTTTAATATCAACGTGAAAAAATATTCAGAACTTGAAAACAAGGTTCATTTTAAAAATTTGCTCCTTTGCGAGATAATAGAAAAGTTATCGTGAACTTAATGTTTGAAGTTTCTTCCATTGTTGCAATACTTTGAAGCATCAAAATCTAACACCACTGGATCTCCGTTCATGAACTGTTGTCCCAGGAGTACCGATTGCATACCTACGTWAAAAGCTTGGTATAGGTGAACCAATCTCCCGATGGAGCATGAAGGAGTAGGATAAAGTCTTCTGGCCGCACATTTCAGCACACCTTCTTCGCATTTTTGGTATAGAATGGTGTAGTTGACTGGCATCTCACGAAAGCCGCGTTCGAATTCATCAATTTCCGAACATGATTGTCCTATTTCAATAATGTTGGACTAAATGTTCAAAAAACTTTCAAGCAGTTTCGAATTGGACACTCACATCTCGGAAACAAGAGAAAGCGTCTCCGTAAACTTTACTTCCAACGAAATCCGCTGCTTCAAGGAAGAAAGCAACTACTTTTGAAAGTTTGCACTGTACATCGTGTCCAAAGCAACTCGAAATGTTCCTTGTGATTTTTAAAACTTCTTTCATAGCTTCAAGGTGATATACAAGTTCGAGATTATTATTTACTTCGTGTTCAAACATTTCGATGAAACTCTGAAGTTTTTATTGTTACATATATATAAGAATAATCGATCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>103 94 77 75 64 60 59 58 55 52 38 33 32 30 30 28 19 18 18 17 12 10 7 4 3 2 2</canonical_bands>
                <polymorphic_bands>103 94 77 75 73 64 60 59 58 52 38 33 32 30 30 28 19 18 17 12 10 7 4 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAACTTGAAAACAAGGTTCATT</pcr_primer_p1>
		<pcr_primer_p2>CCAGAAGACTTTATCCTACTCCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGAACTTGAAAACAAGGTTCATTTTAAAAATTTGCTCCTTTGCGAGATAATAGAAAAGTTATCGTGAACTTAATGTTTGAAGTTTCTTCCATTGTTGCAATACTTTGAAGCATCAAAATCTAACACCACTGGATCTCCGTTCATGAACTGTTGTCCCAGGAGTACCGATTGCATACCTACGTGAAAAGCTTGGTATAGGTGAACCAATCTCCCGATGGAGCATGAAGGAGTAGGATAAAGTCTTCTGG</canonical_amplicon>
		<polymorphic_amplicon>AGAACTTGAAAACAAGGTTCATTTTAAAAATTTGCTCCTTTGCGAGATAATAGAAAAGTTATCGTGAACTTAATGTTTGAAGTTTCTTCCATTGTTGCAATACTTTGAAGCATCAAAATCTAACACCACTGGATCTCCGTTCATGAACTGTTGTCCCAGGAGTACCGATTGCATACCTACGTWAAAAGCTTGGTATAGGTGAACCAATCTCCCGATGGAGCATGAAGGAGTAGGATAAAGTCTTCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29115</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>107704</contig_pos>
        <strand></strand>
        <context>tctgaatgtc[G/T]atttcagaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTGAAACGTCGTGTTACTGTCGGGGTCTGAAACGTCGGATTCTGAATGTC</left_flank>
        <right_flank>ATTTCAGAAACGTCGTGTTTCTGAAACGCCGCATTCTAAAACGCCCAGGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACACCCTCTGTTATGACAGTTCAGAAAGTTCAGAAACACGACGTTTCAGAAGGCAACGTTTCAGAAACATGAGTACATGAGTATATTCAAATCAGTATTGCTCATTTTGAACTAGTTTTTATGGCAGATACTCACTAGTTTGACGATTCTTTACTACATGCTCGTTTGCTAAATAGAGGGCTTGTTCAAATTGAACGTTTCGACTGAAACTGGTTACCGGGAAACAGACGTTTTAGCCAAAGCCTAAAATACTAAACAAAAACCGGAATATTTTGGGAAAAAAAATTCAAAAAGTGGAAATTTTGCTGTTATTTGTGAATTTCAGTACTTTTTGACTGAATTTCTTTCAGAATATTCCGATTTTTGTTTCTTCTAAAAAAACTACAGTTCAAAATGAGCAACACTATTCGAATATACTCATGTACTCATGTTTCTGAAACGTTGCCTTCTGAAACGTCGTGTTACTGTCGGGGTCTGAAACGTCGGATTCTGAATGTCGATTTCAGAAACGTCGTGTTTCTGAAACGCCGCATTCTAAAACGCCCAGGAGCCGAGGTGAATTGTGATATGAATTGTGTTTGATGGTGGGTGAATTTTTAAAATATGAAATTAGAGTGAGAGAGACACAGACATAAAGAGAAAAATGCTTCCAGTTATTATCATCTTCCTCAAACTAGCTCCAATCCCAAAAGTTTTTAGGTTATTTAGCTATTCGGGTGTCTAGGATTCAACTAATTTATTTCAGAGTCGCGAAAATGGAAAAACCACAAAACGCTACATCAAAGTGACCAAACAGGAGCGTATTCTCAAGTAAATCATTCGTAATAGAGCAAGACCGCACACCATGAGAAGAGCGTTCATTGTTGCCAACAATTACCCCGCCTATGCCTATCTGGACGCCCAAACAAGATACGCGCATGTGTAGTTTACATAAGTATTGATTCTAGTTTTTTTAATGTATTTTTCATCCAGGTACCAGTTACGGAGTAAAGCTGTTTT</canonical>
            <polymorphic>CACACCCTCTGTTATGACAGTTCAGAAAGTTCAGAAACACGACGTTTCAGAAGGCAACGTTTCAGAAACATGAGTACATGAGTATATTCAAATCAGTATTGCTCATTTTGAACTAGTTTTTATGGCAGATACTCACTAGTTTGACGATTCTTTACTACATGCTCGTTTGCTAAATAGAGGGCTTGTTCAAATTGAACGTTTCGACTGAAACTGGTTACCGGGAAACAGACGTTTTAGCCAAAGCCTAAAATACTAAACAAAAACCGGAATATTTTGGGAAAAAAAATTCAAAAAGTGGAAATTTTGCTGTTATTTGTGAATTTCAGTACTTTTTGACTGAATTTCTTTCAGAATATTCCGATTTTTGTTTCTTCTAAAAAAACTACAGTTCAAAATGAGCAACACTATTCGAATATACTCATGTACTCATGTTTCTGAAACGTTGCCTTCTGAAACGTCGTGTTACTGTCGGGGTCTGAAACGTCGGATTCTGAATGTCKATTTCAGAAACGTCGTGTTTCTGAAACGCCGCATTCTAAAACGCCCAGGAGCCGAGGTGAATTGTGATATGAATTGTGTTTGATGGTGGGTGAATTTTTAAAATATGAAATTAGAGTGAGAGAGACACAGACATAAAGAGAAAAATGCTTCCAGTTATTATCATCTTCCTCAAACTAGCTCCAATCCCAAAAGTTTTTAGGTTATTTAGCTATTCGGGTGTCTAGGATTCAACTAATTTATTTCAGAGTCGCGAAAATGGAAAAACCACAAAACGCTACATCAAAGTGACCAAACAGGAGCGTATTCTCAAGTAAATCATTCGTAATAGAGCAAGACCGCACACCATGAGAAGAGCGTTCATTGTTGCCAACAATTACCCCGCCTATGCCTATCTGGACGCCCAAACAAGATACGCGCATGTGTAGTTTACATAAGTATTGATTCTAGTTTTTTTAATGTATTTTTCATCCAGGTACCAGTTACGGAGTAAAGCTGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 208 202 89</canonical_bands>
                <polymorphic_bands>590 208 202</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCAAAATGAGCAACACTATTC</pcr_primer_p1>
		<pcr_primer_p2>TTTATGTCTGTGTCTCTCTCACTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTCAAAATGAGCAACACTATTCGAATATACTCATGTACTCATGTTTCTGAAACGTTGCCTTCTGAAACGTCGTGTTACTGTCGGGGTCTGAAACGTCGGATTCTGAATGTCGATTTCAGAAACGTCGTGTTTCTGAAACGCCGCATTCTAAAACGCCCAGGAGCCGAGGTGAATTGTGATATGAATTGTGTTTGATGGTGGGTGAATTTTTAAAATATGAAATTAGAGTGAGAGAGACACAGACATAAA</canonical_amplicon>
		<polymorphic_amplicon>GTTCAAAATGAGCAACACTATTCGAATATACTCATGTACTCATGTTTCTGAAACGTTGCCTTCTGAAACGTCGTGTTACTGTCGGGGTCTGAAACGTCGGATTCTGAATGTCKATTTCAGAAACGTCGTGTTTCTGAAACGCCGCATTCTAAAACGCCCAGGAGCCGAGGTGAATTGTGATATGAATTGTGTTTGATGGTGGGTGAATTTTTAAAATATGAAATTAGAGTGAGAGAGACACAGACATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29116</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>107882</contig_pos>
        <strand>+</strand>
        <context>CCTCAAACTA[A/G]CTCCAATCCC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGACATAAAGAGAAAAATGCTTCCAGTTATTATCATCTTCCTCAAACTA</left_flank>
        <right_flank>CTCCAATCCCAAAAGTTTTTAGGTTATTTAGCTATTCGGGTGTCTAGGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGCTTGTTCAAATTGAACGTTTCGACTGAAACTGGTTACCGGGAAACAGACGTTTTAGCCAAAGCCTAAAATACTAAACAAAAACCGGAATATTTTGGGAAAAAAAATTCAAAAAGTGGAAATTTTGCTGTTATTTGTGAATTTCAGTACTTTTTGACTGAATTTCTTTCAGAATATTCCGATTTTTGTTTCTTCTAAAAAAACTACAGTTCAAAATGAGCAACACTATTCGAATATACTCATGTACTCATGTTTCTGAAACGTTGCCTTCTGAAACGTCGTGTTACTGTCGGGGTCTGAAACGTCGGATTCTGAATGTCGATTTCAGAAACGTCGTGTTTCTGAAACGCCGCATTCTAAAACGCCCAGGAGCCGAGGTGAATTGTGATATGAATTGTGTTTGATGGTGGGTGAATTTTTAAAATATGAAATTAGAGTGAGAGAGACACAGACATAAAGAGAAAAATGCTTCCAGTTATTATCATCTTCCTCAAACTAGCTCCAATCCCAAAAGTTTTTAGGTTATTTAGCTATTCGGGTGTCTAGGATTCAACTAATTTATTTCAGAGTCGCGAAAATGGAAAAACCACAAAACGCTACATCAAAGTGACCAAACAGGAGCGTATTCTCAAGTAAATCATTCGTAATAGAGCAAGACCGCACACCATGAGAAGAGCGTTCATTGTTGCCAACAATTACCCCGCCTATGCCTATCTGGACGCCCAAACAAGATACGCGCATGTGTAGTTTACATAAGTATTGATTCTAGTTTTTTTAATGTATTTTTCATCCAGGTACCAGTTACGGAGTAAAGCTGTTTTTTTATCGTCAAACTATTTTTTTAATTTTTAATTTAATTTATTACAACCTTCTGTCGTGGAAAATTAAAAGAGAAAAGTAATACAACACAATACAATACAATTAGTCGTACAAAAAAAAATCGACATGTCAGGCAGATAAAAATTCACAGAGACACTGTGGATTCGGAAATACATTTAA</canonical>
            <polymorphic>GGGCTTGTTCAAATTGAACGTTTCGACTGAAACTGGTTACCGGGAAACAGACGTTTTAGCCAAAGCCTAAAATACTAAACAAAAACCGGAATATTTTGGGAAAAAAAATTCAAAAAGTGGAAATTTTGCTGTTATTTGTGAATTTCAGTACTTTTTGACTGAATTTCTTTCAGAATATTCCGATTTTTGTTTCTTCTAAAAAAACTACAGTTCAAAATGAGCAACACTATTCGAATATACTCATGTACTCATGTTTCTGAAACGTTGCCTTCTGAAACGTCGTGTTACTGTCGGGGTCTGAAACGTCGGATTCTGAATGTCGATTTCAGAAACGTCGTGTTTCTGAAACGCCGCATTCTAAAACGCCCAGGAGCCGAGGTGAATTGTGATATGAATTGTGTTTGATGGTGGGTGAATTTTTAAAATATGAAATTAGAGTGAGAGAGACACAGACATAAAGAGAAAAATGCTTCCAGTTATTATCATCTTCCTCAAACTARCTCCAATCCCAAAAGTTTTTAGGTTATTTAGCTATTCGGGTGTCTAGGATTCAACTAATTTATTTCAGAGTCGCGAAAATGGAAAAACCACAAAACGCTACATCAAAGTGACCAAACAGGAGCGTATTCTCAAGTAAATCATTCGTAATAGAGCAAGACCGCACACCATGAGAAGAGCGTTCATTGTTGCCAACAATTACCCCGCCTATGCCTATCTGGACGCCCAAACAAGATACGCGCATGTGTAGTTTACATAAGTATTGATTCTAGTTTTTTTAATGTATTTTTCATCCAGGTACCAGTTACGGAGTAAAGCTGTTTTTTTATCGTCAAACTATTTTTTTAATTTTTAATTTAATTTATTACAACCTTCTGTCGTGGAAAATTAAAAGAGAAAAGTAATACAACACAATACAATACAATTAGTCGTACAAAAAAAAATCGACATGTCAGGCAGATAAAAATTCACAGAGACACTGTGGATTCGGAAATACATTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>500 284 185 31</canonical_bands>
                <polymorphic_bands>531 284 185</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>497 233 223 47</canonical_bands>
                <polymorphic_bands>544 233 223</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>308 284 185 127 56 31 6 3</canonical_bands>
                <polymorphic_bands>308 284 185 158 56 6 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGTGAATTGTGATATGAATTGT</pcr_primer_p1>
		<pcr_primer_p2>CTGTTTGGTCACTTTGATGTAG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AGGTGAATTGTGATATGAATTGTGTTTGATGGTGGGTGAATTTTTAAAATATGAAATTAGAGTGAGAGAGACACAGACATAAAGAGAAAAATGCTTCCAGTTATTATCATCTTCCTCAAACTAGCTCCAATCCCAAAAGTTTTTAGGTTATTTAGCTATTCGGGTGTCTAGGATTCAACTAATTTATTTCAGAGTCGCGAAAATGGAAAAACCACAAAACGCTACATCAAAGTGACCAAACAG</canonical_amplicon>
		<polymorphic_amplicon>AGGTGAATTGTGATATGAATTGTGTTTGATGGTGGGTGAATTTTTAAAATATGAAATTAGAGTGAGAGAGACACAGACATAAAGAGAAAAATGCTTCCAGTTATTATCATCTTCCTCAAACTARCTCCAATCCCAAAAGTTTTTAGGTTATTTAGCTATTCGGGTGTCTAGGATTCAACTAATTTATTTCAGAGTCGCGAAAATGGAAAAACCACAAAACGCTACATCAAAGTGACCAAACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29117</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>117628</contig_pos>
        <strand></strand>
        <context>caattttcca[G/A]ccagattcga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTCCACTTTCTTGCATATGGCCTCAGATTCGGGTAACGCAATTTTCCA</left_flank>
        <right_flank>CCAGATTCGAGTAAAATTCAAACCAAATTCGGAATTTTTTTCATTTTCTG</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTACTAGGAAGCGGGGCGAAAACGCAATATGCGCGCGGTCGAATTTGCAACCTGCCGCACACCGATAATTTTACTGCTTTTTTCTACACATTTTATGTAATAAAATGGTTTCAAAGCAGAATTTCGAATAAAAGTATATCAATATGTAAAAAATTGTAGGGTACATTCAACAGTGAACATGAATGAACACTTGGGCGGGTCTCACAGACATCCACCGAGCACAATCCCCGCTCAAACTCTGGTAATCGGTTTCTAACCAGTTTCGGGAAATTTTTCAAAGAGGCCGTATGCAAGAAAATGGAAAACCGTTTTCCGATGTTTGGAAAATGATTTTCTGACAGTGTGAAAATATTTATTTTGATTTAAAAATGGATTCGGGGCTAAAAAATGACTAAAAATGCATGTAATCACTGTAAAAATTCTTGTCAGACTTTCAGAAAATCATTGGTTTTCCACTTTCTTGCATATGGCCTCAGATTCGGGTAACGCAATTTTCCAGCCAGATTCGAGTAAAATTCAAACCAAATTCGGAATTTTTTTCATTTTCTGACCAGATCCGACCGAGAAAGCTAATTTTTCAACCTGGTTCGGACAATTTTCTAACCAGATCTAGCCATTTATGCTCCGGAATTTTCCTGAATCTGGTTAGAAACCGATTACCAGAGAAAACACCCAGCGACAATAAAGCCACCAGACACTCAACAACCGAATAGAAACGCTCCCACCGTGAGCTTGAATCGACAAGGTAAAACAACAATCGATTCTTCTGAAGTCAATAATTATAATTGTTATGCACCAATTAAAAATTGATTTATTGAGAAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTTGTAATCCTCGCCCTCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGTCGGCACGCGACATTCCTGGCTTGATGCTCGAAAAGAATTCGGAACCCGTCATGAACACCAGCTCCACCGGG</canonical>
            <polymorphic>TTTACTAGGAAGCGGGGCGAAAACGCAATATGCGCGCGGTCGAATTTGCAACCTGCCGCACACCGATAATTTTACTGCTTTTTTCTACACATTTTATGTAATAAAATGGTTTCAAAGCAGAATTTCGAATAAAAGTATATCAATATGTAAAAAATTGTAGGGTACATTCAACAGTGAACATGAATGAACACTTGGGCGGGTCTCACAGACATCCACCGAGCACAATCCCCGCTCAAACTCTGGTAATCGGTTTCTAACCAGTTTCGGGAAATTTTTCAAAGAGGCCGTATGCAAGAAAATGGAAAACCGTTTTCCGATGTTTGGAAAATGATTTTCTGACAGTGTGAAAATATTTATTTTGATTTAAAAATGGATTCGGGGCTAAAAAATGACTAAAAATGCATGTAATCACTGTAAAAATTCTTGTCAGACTTTCAGAAAATCATTGGTTTTCCACTTTCTTGCATATGGCCTCAGATTCGGGTAACGCAATTTTCCARCCAGATTCGAGTAAAATTCAAACCAAATTCGGAATTTTTTTCATTTTCTGACCAGATCCGACCGAGAAAGCTAATTTTTCAACCTGGTTCGGACAATTTTCTAACCAGATCTAGCCATTTATGCTCCGGAATTTTCCTGAATCTGGTTAGAAACCGATTACCAGAGAAAACACCCAGCGACAATAAAGCCACCAGACACTCAACAACCGAATAGAAACGCTCCCACCGTGAGCTTGAATCGACAAGGTAAAACAACAATCGATTCTTCTGAAGTCAATAATTATAATTGTTATGCACCAATTAAAAATTGATTTATTGAGAAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTTGTAATCCTCGCCCTCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGTCGGCACGCGACATTCCTGGCTTGATGCTCGAAAAGAATTCGGAACCCGTCATGAACACCAGCTCCACCGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>284 216 97 90 74 70 44 44 42 29 10</canonical_bands>
                <polymorphic_bands>284 216 99 97 90 74 44 44 42 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTGAACATGAATGAACACTTG</pcr_primer_p1>
		<pcr_primer_p2>GTGTCTGGTGGCTTTATTGT</pcr_primer_p2>
		<pcr_amplicon_size>527</pcr_amplicon_size>
		<canonical_amplicon>AGTGAACATGAATGAACACTTGGGCGGGTCTCACAGACATCCACCGAGCACAATCCCCGCTCAAACTCTGGTAATCGGTTTCTAACCAGTTTCGGGAAATTTTTCAAAGAGGCCGTATGCAAGAAAATGGAAAACCGTTTTCCGATGTTTGGAAAATGATTTTCTGACAGTGTGAAAATATTTATTTTGATTTAAAAATGGATTCGGGGCTAAAAAATGACTAAAAATGCATGTAATCACTGTAAAAATTCTTGTCAGACTTTCAGAAAATCATTGGTTTTCCACTTTCTTGCATATGGCCTCAGATTCGGGTAACGCAATTTTCCAGCCAGATTCGAGTAAAATTCAAACCAAATTCGGAATTTTTTTCATTTTCTGACCAGATCCGACCGAGAAAGCTAATTTTTCAACCTGGTTCGGACAATTTTCTAACCAGATCTAGCCATTTATGCTCCGGAATTTTCCTGAATCTGGTTAGAAACCGATTACCAGAGAAAACACCCAGCGACAATAAAGCCACCAGACAC</canonical_amplicon>
		<polymorphic_amplicon>AGTGAACATGAATGAACACTTGGGCGGGTCTCACAGACATCCACCGAGCACAATCCCCGCTCAAACTCTGGTAATCGGTTTCTAACCAGTTTCGGGAAATTTTTCAAAGAGGCCGTATGCAAGAAAATGGAAAACCGTTTTCCGATGTTTGGAAAATGATTTTCTGACAGTGTGAAAATATTTATTTTGATTTAAAAATGGATTCGGGGCTAAAAAATGACTAAAAATGCATGTAATCACTGTAAAAATTCTTGTCAGACTTTCAGAAAATCATTGGTTTTCCACTTTCTTGCATATGGCCTCAGATTCGGGTAACGCAATTTTCCARCCAGATTCGAGTAAAATTCAAACCAAATTCGGAATTTTTTTCATTTTCTGACCAGATCCGACCGAGAAAGCTAATTTTTCAACCTGGTTCGGACAATTTTCTAACCAGATCTAGCCATTTATGCTCCGGAATTTTCCTGAATCTGGTTAGAAACCGATTACCAGAGAAAACACCCAGCGACAATAAAGCCACCAGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29118</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>117715</contig_pos>
        <strand></strand>
        <context>tttcaacctg[G/A]ttcggacaat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTTCATTTTCTGACCAGATCCGACCGAGAAAGCTAATTTTTCAACCTG</left_flank>
        <right_flank>TTCGGACAATTTTCTAACCAGATCTAGCCATTTATGCTCCGGAATTTTCC</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACATTTTATGTAATAAAATGGTTTCAAAGCAGAATTTCGAATAAAAGTATATCAATATGTAAAAAATTGTAGGGTACATTCAACAGTGAACATGAATGAACACTTGGGCGGGTCTCACAGACATCCACCGAGCACAATCCCCGCTCAAACTCTGGTAATCGGTTTCTAACCAGTTTCGGGAAATTTTTCAAAGAGGCCGTATGCAAGAAAATGGAAAACCGTTTTCCGATGTTTGGAAAATGATTTTCTGACAGTGTGAAAATATTTATTTTGATTTAAAAATGGATTCGGGGCTAAAAAATGACTAAAAATGCATGTAATCACTGTAAAAATTCTTGTCAGACTTTCAGAAAATCATTGGTTTTCCACTTTCTTGCATATGGCCTCAGATTCGGGTAACGCAATTTTCCAGCCAGATTCGAGTAAAATTCAAACCAAATTCGGAATTTTTTTCATTTTCTGACCAGATCCGACCGAGAAAGCTAATTTTTCAACCTGGTTCGGACAATTTTCTAACCAGATCTAGCCATTTATGCTCCGGAATTTTCCTGAATCTGGTTAGAAACCGATTACCAGAGAAAACACCCAGCGACAATAAAGCCACCAGACACTCAACAACCGAATAGAAACGCTCCCACCGTGAGCTTGAATCGACAAGGTAAAACAACAATCGATTCTTCTGAAGTCAATAATTATAATTGTTATGCACCAATTAAAAATTGATTTATTGAGAAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTTGTAATCCTCGCCCTCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGTCGGCACGCGACATTCCTGGCTTGATGCTCGAAAAGAATTCGGAACCCGTCATGAACACCAGCTCCACCGGGACTCAAAGTGAGCCGGCTCACACTGATGCTCACGACGTGTTTCACGAGATTCCATCGCAGTTCTGGTCTTATGACGTCTCTGGGAGC</canonical>
            <polymorphic>CACATTTTATGTAATAAAATGGTTTCAAAGCAGAATTTCGAATAAAAGTATATCAATATGTAAAAAATTGTAGGGTACATTCAACAGTGAACATGAATGAACACTTGGGCGGGTCTCACAGACATCCACCGAGCACAATCCCCGCTCAAACTCTGGTAATCGGTTTCTAACCAGTTTCGGGAAATTTTTCAAAGAGGCCGTATGCAAGAAAATGGAAAACCGTTTTCCGATGTTTGGAAAATGATTTTCTGACAGTGTGAAAATATTTATTTTGATTTAAAAATGGATTCGGGGCTAAAAAATGACTAAAAATGCATGTAATCACTGTAAAAATTCTTGTCAGACTTTCAGAAAATCATTGGTTTTCCACTTTCTTGCATATGGCCTCAGATTCGGGTAACGCAATTTTCCAGCCAGATTCGAGTAAAATTCAAACCAAATTCGGAATTTTTTTCATTTTCTGACCAGATCCGACCGAGAAAGCTAATTTTTCAACCTGRTTCGGACAATTTTCTAACCAGATCTAGCCATTTATGCTCCGGAATTTTCCTGAATCTGGTTAGAAACCGATTACCAGAGAAAACACCCAGCGACAATAAAGCCACCAGACACTCAACAACCGAATAGAAACGCTCCCACCGTGAGCTTGAATCGACAAGGTAAAACAACAATCGATTCTTCTGAAGTCAATAATTATAATTGTTATGCACCAATTAAAAATTGATTTATTGAGAAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTTGTAATCCTCGCCCTCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGTCGGCACGCGACATTCCTGGCTTGATGCTCGAAAAGAATTCGGAACCCGTCATGAACACCAGCTCCACCGGGACTCAAAGTGAGCCGGCTCACACTGATGCTCACGACGTGTTTCACGAGATTCCATCGCAGTTCTGGTCTTATGACGTCTCTGGGAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>497 361 90 52</canonical_bands>
                <polymorphic_bands>858 90 52</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>497 361 142</canonical_bands>
                <polymorphic_bands>858 142</polymorphic_bands>
            </assay>
            <assay>
                <site>ACCWGGT</site>
                <isoschizomers>
                    <enzyme>MabI</enzyme>
                    <enzyme>SexAI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTGAACATGAATGAACACTTG</pcr_primer_p1>
		<pcr_primer_p2>GTGTCTGGTGGCTTTATTGT</pcr_primer_p2>
		<pcr_amplicon_size>527</pcr_amplicon_size>
		<canonical_amplicon>AGTGAACATGAATGAACACTTGGGCGGGTCTCACAGACATCCACCGAGCACAATCCCCGCTCAAACTCTGGTAATCGGTTTCTAACCAGTTTCGGGAAATTTTTCAAAGAGGCCGTATGCAAGAAAATGGAAAACCGTTTTCCGATGTTTGGAAAATGATTTTCTGACAGTGTGAAAATATTTATTTTGATTTAAAAATGGATTCGGGGCTAAAAAATGACTAAAAATGCATGTAATCACTGTAAAAATTCTTGTCAGACTTTCAGAAAATCATTGGTTTTCCACTTTCTTGCATATGGCCTCAGATTCGGGTAACGCAATTTTCCAGCCAGATTCGAGTAAAATTCAAACCAAATTCGGAATTTTTTTCATTTTCTGACCAGATCCGACCGAGAAAGCTAATTTTTCAACCTGGTTCGGACAATTTTCTAACCAGATCTAGCCATTTATGCTCCGGAATTTTCCTGAATCTGGTTAGAAACCGATTACCAGAGAAAACACCCAGCGACAATAAAGCCACCAGACAC</canonical_amplicon>
		<polymorphic_amplicon>AGTGAACATGAATGAACACTTGGGCGGGTCTCACAGACATCCACCGAGCACAATCCCCGCTCAAACTCTGGTAATCGGTTTCTAACCAGTTTCGGGAAATTTTTCAAAGAGGCCGTATGCAAGAAAATGGAAAACCGTTTTCCGATGTTTGGAAAATGATTTTCTGACAGTGTGAAAATATTTATTTTGATTTAAAAATGGATTCGGGGCTAAAAAATGACTAAAAATGCATGTAATCACTGTAAAAATTCTTGTCAGACTTTCAGAAAATCATTGGTTTTCCACTTTCTTGCATATGGCCTCAGATTCGGGTAACGCAATTTTCCAGCCAGATTCGAGTAAAATTCAAACCAAATTCGGAATTTTTTTCATTTTCTGACCAGATCCGACCGAGAAAGCTAATTTTTCAACCTGRTTCGGACAATTTTCTAACCAGATCTAGCCATTTATGCTCCGGAATTTTCCTGAATCTGGTTAGAAACCGATTACCAGAGAAAACACCCAGCGACAATAAAGCCACCAGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29119</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>117749</contig_pos>
        <strand></strand>
        <context>ctagccattt[A/T]tgctccggaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTAATTTTTCAACCTGGTTCGGACAATTTTCTAACCAGATCTAGCCATTT</left_flank>
        <right_flank>TGCTCCGGAATTTTCCTGAATCTGGTTAGAAACCGATTACCAGAGAAAAC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCGAATAAAAGTATATCAATATGTAAAAAATTGTAGGGTACATTCAACAGTGAACATGAATGAACACTTGGGCGGGTCTCACAGACATCCACCGAGCACAATCCCCGCTCAAACTCTGGTAATCGGTTTCTAACCAGTTTCGGGAAATTTTTCAAAGAGGCCGTATGCAAGAAAATGGAAAACCGTTTTCCGATGTTTGGAAAATGATTTTCTGACAGTGTGAAAATATTTATTTTGATTTAAAAATGGATTCGGGGCTAAAAAATGACTAAAAATGCATGTAATCACTGTAAAAATTCTTGTCAGACTTTCAGAAAATCATTGGTTTTCCACTTTCTTGCATATGGCCTCAGATTCGGGTAACGCAATTTTCCAGCCAGATTCGAGTAAAATTCAAACCAAATTCGGAATTTTTTTCATTTTCTGACCAGATCCGACCGAGAAAGCTAATTTTTCAACCTGGTTCGGACAATTTTCTAACCAGATCTAGCCATTTATGCTCCGGAATTTTCCTGAATCTGGTTAGAAACCGATTACCAGAGAAAACACCCAGCGACAATAAAGCCACCAGACACTCAACAACCGAATAGAAACGCTCCCACCGTGAGCTTGAATCGACAAGGTAAAACAACAATCGATTCTTCTGAAGTCAATAATTATAATTGTTATGCACCAATTAAAAATTGATTTATTGAGAAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTTGTAATCCTCGCCCTCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGTCGGCACGCGACATTCCTGGCTTGATGCTCGAAAAGAATTCGGAACCCGTCATGAACACCAGCTCCACCGGGACTCAAAGTGAGCCGGCTCACACTGATGCTCACGACGTGTTTCACGAGATTCCATCGCAGTTCTGGTCTTATGACGTCTCTGGGAGCGATGTTGACTTCGATGATGACGAGGACGATCCAA</canonical>
            <polymorphic>ATTTCGAATAAAAGTATATCAATATGTAAAAAATTGTAGGGTACATTCAACAGTGAACATGAATGAACACTTGGGCGGGTCTCACAGACATCCACCGAGCACAATCCCCGCTCAAACTCTGGTAATCGGTTTCTAACCAGTTTCGGGAAATTTTTCAAAGAGGCCGTATGCAAGAAAATGGAAAACCGTTTTCCGATGTTTGGAAAATGATTTTCTGACAGTGTGAAAATATTTATTTTGATTTAAAAATGGATTCGGGGCTAAAAAATGACTAAAAATGCATGTAATCACTGTAAAAATTCTTGTCAGACTTTCAGAAAATCATTGGTTTTCCACTTTCTTGCATATGGCCTCAGATTCGGGTAACGCAATTTTCCAGCCAGATTCGAGTAAAATTCAAACCAAATTCGGAATTTTTTTCATTTTCTGACCAGATCCGACCGAGAAAGCTAATTTTTCAACCTGGTTCGGACAATTTTCTAACCAGATCTAGCCATTTWTGCTCCGGAATTTTCCTGAATCTGGTTAGAAACCGATTACCAGAGAAAACACCCAGCGACAATAAAGCCACCAGACACTCAACAACCGAATAGAAACGCTCCCACCGTGAGCTTGAATCGACAAGGTAAAACAACAATCGATTCTTCTGAAGTCAATAATTATAATTGTTATGCACCAATTAAAAATTGATTTATTGAGAAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTTGTAATCCTCGCCCTCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGTCGGCACGCGACATTCCTGGCTTGATGCTCGAAAAGAATTCGGAACCCGTCATGAACACCAGCTCCACCGGGACTCAAAGTGAGCCGGCTCACACTGATGCTCACGACGTGTTTCACGAGATTCCATCGCAGTTCTGGTCTTATGACGTCTCTGGGAGCGATGTTGACTTCGATGATGACGAGGACGATCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGAACATGAATGAACACTTG</pcr_primer_p1>
		<pcr_primer_p2>GTGTCTGGTGGCTTTATTGT</pcr_primer_p2>
		<pcr_amplicon_size>527</pcr_amplicon_size>
		<canonical_amplicon>AGTGAACATGAATGAACACTTGGGCGGGTCTCACAGACATCCACCGAGCACAATCCCCGCTCAAACTCTGGTAATCGGTTTCTAACCAGTTTCGGGAAATTTTTCAAAGAGGCCGTATGCAAGAAAATGGAAAACCGTTTTCCGATGTTTGGAAAATGATTTTCTGACAGTGTGAAAATATTTATTTTGATTTAAAAATGGATTCGGGGCTAAAAAATGACTAAAAATGCATGTAATCACTGTAAAAATTCTTGTCAGACTTTCAGAAAATCATTGGTTTTCCACTTTCTTGCATATGGCCTCAGATTCGGGTAACGCAATTTTCCAGCCAGATTCGAGTAAAATTCAAACCAAATTCGGAATTTTTTTCATTTTCTGACCAGATCCGACCGAGAAAGCTAATTTTTCAACCTGGTTCGGACAATTTTCTAACCAGATCTAGCCATTTATGCTCCGGAATTTTCCTGAATCTGGTTAGAAACCGATTACCAGAGAAAACACCCAGCGACAATAAAGCCACCAGACAC</canonical_amplicon>
		<polymorphic_amplicon>AGTGAACATGAATGAACACTTGGGCGGGTCTCACAGACATCCACCGAGCACAATCCCCGCTCAAACTCTGGTAATCGGTTTCTAACCAGTTTCGGGAAATTTTTCAAAGAGGCCGTATGCAAGAAAATGGAAAACCGTTTTCCGATGTTTGGAAAATGATTTTCTGACAGTGTGAAAATATTTATTTTGATTTAAAAATGGATTCGGGGCTAAAAAATGACTAAAAATGCATGTAATCACTGTAAAAATTCTTGTCAGACTTTCAGAAAATCATTGGTTTTCCACTTTCTTGCATATGGCCTCAGATTCGGGTAACGCAATTTTCCAGCCAGATTCGAGTAAAATTCAAACCAAATTCGGAATTTTTTTCATTTTCTGACCAGATCCGACCGAGAAAGCTAATTTTTCAACCTGGTTCGGACAATTTTCTAACCAGATCTAGCCATTTWTGCTCCGGAATTTTCCTGAATCTGGTTAGAAACCGATTACCAGAGAAAACACCCAGCGACAATAAAGCCACCAGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29120</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>117846</contig_pos>
        <strand>+</strand>
        <context>CGAATAGAAA[C/T]GCTCCCACCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACACCCAGCGACAATAAAGCCACCAGACACTCAACAACCGAATAGAAA</left_flank>
        <right_flank>GCTCCCACCGTGAGCTTGAATCGACAAGGTAAAACAACAATCGATTCTTC</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCACAATCCCCGCTCAAACTCTGGTAATCGGTTTCTAACCAGTTTCGGGAAATTTTTCAAAGAGGCCGTATGCAAGAAAATGGAAAACCGTTTTCCGATGTTTGGAAAATGATTTTCTGACAGTGTGAAAATATTTATTTTGATTTAAAAATGGATTCGGGGCTAAAAAATGACTAAAAATGCATGTAATCACTGTAAAAATTCTTGTCAGACTTTCAGAAAATCATTGGTTTTCCACTTTCTTGCATATGGCCTCAGATTCGGGTAACGCAATTTTCCAGCCAGATTCGAGTAAAATTCAAACCAAATTCGGAATTTTTTTCATTTTCTGACCAGATCCGACCGAGAAAGCTAATTTTTCAACCTGGTTCGGACAATTTTCTAACCAGATCTAGCCATTTATGCTCCGGAATTTTCCTGAATCTGGTTAGAAACCGATTACCAGAGAAAACACCCAGCGACAATAAAGCCACCAGACACTCAACAACCGAATAGAAACGCTCCCACCGTGAGCTTGAATCGACAAGGTAAAACAACAATCGATTCTTCTGAAGTCAATAATTATAATTGTTATGCACCAATTAAAAATTGATTTATTGAGAAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTTGTAATCCTCGCCCTCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGTCGGCACGCGACATTCCTGGCTTGATGCTCGAAAAGAATTCGGAACCCGTCATGAACACCAGCTCCACCGGGACTCAAAGTGAGCCGGCTCACACTGATGCTCACGACGTGTTTCACGAGATTCCATCGCAGTTCTGGTCTTATGACGTCTCTGGGAGCGATGTTGACTTCGATGATGACGAGGACGATCCAATGGCTGACTGAAAAAAATAACATTTTCTTTGAACCGATTTATCAAAGCATACCTGTGACATCCTTTTACTTCCGTTTTTGAATAAATTATCTGAATT</canonical>
            <polymorphic>AGCACAATCCCCGCTCAAACTCTGGTAATCGGTTTCTAACCAGTTTCGGGAAATTTTTCAAAGAGGCCGTATGCAAGAAAATGGAAAACCGTTTTCCGATGTTTGGAAAATGATTTTCTGACAGTGTGAAAATATTTATTTTGATTTAAAAATGGATTCGGGGCTAAAAAATGACTAAAAATGCATGTAATCACTGTAAAAATTCTTGTCAGACTTTCAGAAAATCATTGGTTTTCCACTTTCTTGCATATGGCCTCAGATTCGGGTAACGCAATTTTCCAGCCAGATTCGAGTAAAATTCAAACCAAATTCGGAATTTTTTTCATTTTCTGACCAGATCCGACCGAGAAAGCTAATTTTTCAACCTGGTTCGGACAATTTTCTAACCAGATCTAGCCATTTATGCTCCGGAATTTTCCTGAATCTGGTTAGAAACCGATTACCAGAGAAAACACCCAGCGACAATAAAGCCACCAGACACTCAACAACCGAATAGAAAYGCTCCCACCGTGAGCTTGAATCGACAAGGTAAAACAACAATCGATTCTTCTGAAGTCAATAATTATAATTGTTATGCACCAATTAAAAATTGATTTATTGAGAAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTTGTAATCCTCGCCCTCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGTCGGCACGCGACATTCCTGGCTTGATGCTCGAAAAGAATTCGGAACCCGTCATGAACACCAGCTCCACCGGGACTCAAAGTGAGCCGGCTCACACTGATGCTCACGACGTGTTTCACGAGATTCCATCGCAGTTCTGGTCTTATGACGTCTCTGGGAGCGATGTTGACTTCGATGATGACGAGGACGATCCAATGGCTGACTGAAAAAAATAACATTTTCTTTGAACCGATTTATCAAAGCATACCTGTGACATCCTTTTACTTCCGTTTTTGAATAAATTATCTGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGAACATGAATGAACACTTG</pcr_primer_p1>
		<pcr_primer_p2>AATTTTTAATTGGTGCATAACAA</pcr_primer_p2>
		<pcr_amplicon_size>637</pcr_amplicon_size>
		<canonical_amplicon>ACGCTCCCACCGTGAGCTTGAATCGACAAGGTAAAACAACAATCGATTCTTCTGAAGTCAATAATTATAATTGTTATGCACCAATTAAAAATT</canonical_amplicon>
		<polymorphic_amplicon>AYGCTCCCACCGTGAGCTTGAATCGACAAGGTAAAACAACAATCGATTCTTCTGAAGTCAATAATTATAATTGTTATGCACCAATTAAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29121</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>117868</contig_pos>
        <strand>+</strand>
        <context>GAGCTTGAAT[A/C]GACAAGGTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CACCAGACACTCAACAACCGAATAGAAACGCTCCCACCGTGAGCTTGAAT</left_flank>
        <right_flank>GACAAGGTAAAACAACAATCGATTCTTCTGAAGTCAATAATTATAATTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTAATCGGTTTCTAACCAGTTTCGGGAAATTTTTCAAAGAGGCCGTATGCAAGAAAATGGAAAACCGTTTTCCGATGTTTGGAAAATGATTTTCTGACAGTGTGAAAATATTTATTTTGATTTAAAAATGGATTCGGGGCTAAAAAATGACTAAAAATGCATGTAATCACTGTAAAAATTCTTGTCAGACTTTCAGAAAATCATTGGTTTTCCACTTTCTTGCATATGGCCTCAGATTCGGGTAACGCAATTTTCCAGCCAGATTCGAGTAAAATTCAAACCAAATTCGGAATTTTTTTCATTTTCTGACCAGATCCGACCGAGAAAGCTAATTTTTCAACCTGGTTCGGACAATTTTCTAACCAGATCTAGCCATTTATGCTCCGGAATTTTCCTGAATCTGGTTAGAAACCGATTACCAGAGAAAACACCCAGCGACAATAAAGCCACCAGACACTCAACAACCGAATAGAAACGCTCCCACCGTGAGCTTGAATCGACAAGGTAAAACAACAATCGATTCTTCTGAAGTCAATAATTATAATTGTTATGCACCAATTAAAAATTGATTTATTGAGAAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTTGTAATCCTCGCCCTCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGTCGGCACGCGACATTCCTGGCTTGATGCTCGAAAAGAATTCGGAACCCGTCATGAACACCAGCTCCACCGGGACTCAAAGTGAGCCGGCTCACACTGATGCTCACGACGTGTTTCACGAGATTCCATCGCAGTTCTGGTCTTATGACGTCTCTGGGAGCGATGTTGACTTCGATGATGACGAGGACGATCCAATGGCTGACTGAAAAAAATAACATTTTCTTTGAACCGATTTATCAAAGCATACCTGTGACATCCTTTTACTTCCGTTTTTGAATAAATTATCTGAATTTAATTATGAACCCCCAAAAACC</canonical>
            <polymorphic>TGGTAATCGGTTTCTAACCAGTTTCGGGAAATTTTTCAAAGAGGCCGTATGCAAGAAAATGGAAAACCGTTTTCCGATGTTTGGAAAATGATTTTCTGACAGTGTGAAAATATTTATTTTGATTTAAAAATGGATTCGGGGCTAAAAAATGACTAAAAATGCATGTAATCACTGTAAAAATTCTTGTCAGACTTTCAGAAAATCATTGGTTTTCCACTTTCTTGCATATGGCCTCAGATTCGGGTAACGCAATTTTCCAGCCAGATTCGAGTAAAATTCAAACCAAATTCGGAATTTTTTTCATTTTCTGACCAGATCCGACCGAGAAAGCTAATTTTTCAACCTGGTTCGGACAATTTTCTAACCAGATCTAGCCATTTATGCTCCGGAATTTTCCTGAATCTGGTTAGAAACCGATTACCAGAGAAAACACCCAGCGACAATAAAGCCACCAGACACTCAACAACCGAATAGAAACGCTCCCACCGTGAGCTTGAATMGACAAGGTAAAACAACAATCGATTCTTCTGAAGTCAATAATTATAATTGTTATGCACCAATTAAAAATTGATTTATTGAGAAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTTGTAATCCTCGCCCTCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGTCGGCACGCGACATTCCTGGCTTGATGCTCGAAAAGAATTCGGAACCCGTCATGAACACCAGCTCCACCGGGACTCAAAGTGAGCCGGCTCACACTGATGCTCACGACGTGTTTCACGAGATTCCATCGCAGTTCTGGTCTTATGACGTCTCTGGGAGCGATGTTGACTTCGATGATGACGAGGACGATCCAATGGCTGACTGAAAAAAATAACATTTTCTTTGAACCGATTTATCAAAGCATACCTGTGACATCCTTTTACTTCCGTTTTTGAATAAATTATCTGAATTTAATTATGAACCCCCAAAAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>268 232 198 141 141 20</canonical_bands>
                <polymorphic_bands>268 252 198 141 141</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>192 135 133 132 107 104 97 48 27 25</canonical_bands>
                <polymorphic_bands>192 135 133 132 122 107 104 48 27</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>287 192 135 133 104 97 27 25</canonical_bands>
                <polymorphic_bands>287 192 135 133 122 104 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAATAAAGCCACCAGACACT</pcr_primer_p1>
		<pcr_primer_p2>ACATTGGATGTGACGACTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACAATAAAGCCACCAGACACTCAACAACCGAATAGAAACGCTCCCACCGTGAGCTTGAATCGACAAGGTAAAACAACAATCGATTCTTCTGAAGTCAATAATTATAATTGTTATGCACCAATTAAAAATTGATTTATTGAGAAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTTGTAATCCTCGCCCTCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGT</canonical_amplicon>
		<polymorphic_amplicon>ACAATAAAGCCACCAGACACTCAACAACCGAATAGAAACGCTCCCACCGTGAGCTTGAATMGACAAGGTAAAACAACAATCGATTCTTCTGAAGTCAATAATTATAATTGTTATGCACCAATTAAAAATTGATTTATTGAGAAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTTGTAATCCTCGCCCTCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29122</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>117886</contig_pos>
        <strand>+</strand>
        <context>TAAAACAACA[A/G]TCGATTCKTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAATAGAAACGCTCCCACCGTGAGCTTGAATCGACAAGGTAAAACAACA</left_flank>
        <right_flank>TCGATTCTTCTGAAGTCAATAATTATAATTGTTATGCACCAATTAAAAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTTTCGGGAAATTTTTCAAAGAGGCCGTATGCAAGAAAATGGAAAACCGTTTTCCGATGTTTGGAAAATGATTTTCTGACAGTGTGAAAATATTTATTTTGATTTAAAAATGGATTCGGGGCTAAAAAATGACTAAAAATGCATGTAATCACTGTAAAAATTCTTGTCAGACTTTCAGAAAATCATTGGTTTTCCACTTTCTTGCATATGGCCTCAGATTCGGGTAACGCAATTTTCCAGCCAGATTCGAGTAAAATTCAAACCAAATTCGGAATTTTTTTCATTTTCTGACCAGATCCGACCGAGAAAGCTAATTTTTCAACCTGGTTCGGACAATTTTCTAACCAGATCTAGCCATTTATGCTCCGGAATTTTCCTGAATCTGGTTAGAAACCGATTACCAGAGAAAACACCCAGCGACAATAAAGCCACCAGACACTCAACAACCGAATAGAAACGCTCCCACCGTGAGCTTGAATCGACAAGGTAAAACAACAATCGATTCTTCTGAAGTCAATAATTATAATTGTTATGCACCAATTAAAAATTGATTTATTGAGAAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTTGTAATCCTCGCCCTCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGTCGGCACGCGACATTCCTGGCTTGATGCTCGAAAAGAATTCGGAACCCGTCATGAACACCAGCTCCACCGGGACTCAAAGTGAGCCGGCTCACACTGATGCTCACGACGTGTTTCACGAGATTCCATCGCAGTTCTGGTCTTATGACGTCTCTGGGAGCGATGTTGACTTCGATGATGACGAGGACGATCCAATGGCTGACTGAAAAAAATAACATTTTCTTTGAACCGATTTATCAAAGCATACCTGTGACATCCTTTTACTTCCGTTTTTGAATAAATTATCTGAATTTAATTATGAACCCCCAAAAACCCCCGGAAACAACAATTCT</canonical>
            <polymorphic>CAGTTTCGGGAAATTTTTCAAAGAGGCCGTATGCAAGAAAATGGAAAACCGTTTTCCGATGTTTGGAAAATGATTTTCTGACAGTGTGAAAATATTTATTTTGATTTAAAAATGGATTCGGGGCTAAAAAATGACTAAAAATGCATGTAATCACTGTAAAAATTCTTGTCAGACTTTCAGAAAATCATTGGTTTTCCACTTTCTTGCATATGGCCTCAGATTCGGGTAACGCAATTTTCCAGCCAGATTCGAGTAAAATTCAAACCAAATTCGGAATTTTTTTCATTTTCTGACCAGATCCGACCGAGAAAGCTAATTTTTCAACCTGGTTCGGACAATTTTCTAACCAGATCTAGCCATTTATGCTCCGGAATTTTCCTGAATCTGGTTAGAAACCGATTACCAGAGAAAACACCCAGCGACAATAAAGCCACCAGACACTCAACAACCGAATAGAAACGCTCCCACCGTGAGCTTGAATCGACAAGGTAAAACAACARTCGATTCTTCTGAAGTCAATAATTATAATTGTTATGCACCAATTAAAAATTGATTTATTGAGAAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTTGTAATCCTCGCCCTCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGTCGGCACGCGACATTCCTGGCTTGATGCTCGAAAAGAATTCGGAACCCGTCATGAACACCAGCTCCACCGGGACTCAAAGTGAGCCGGCTCACACTGATGCTCACGACGTGTTTCACGAGATTCCATCGCAGTTCTGGTCTTATGACGTCTCTGGGAGCGATGTTGACTTCGATGATGACGAGGACGATCCAATGGCTGACTGAAAAAAATAACATTTTCTTTGAACCGATTTATCAAAGCATACCTGTGACATCCTTTTACTTCCGTTTTTGAATAAATTATCTGAATTTAATTATGAACCCCCAAAAACCCCCGGAAACAACAATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAATAAAGCCACCAGACACT</pcr_primer_p1>
		<pcr_primer_p2>ACATTGGATGTGACGACTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACAATAAAGCCACCAGACACTCAACAACCGAATAGAAACGCTCCCACCGTGAGCTTGAATCGACAAGGTAAAACAACAATCGATTCTTCTGAAGTCAATAATTATAATTGTTATGCACCAATTAAAAATTGATTTATTGAGAAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTTGTAATCCTCGCCCTCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGT</canonical_amplicon>
		<polymorphic_amplicon>ACAATAAAGCCACCAGACACTCAACAACCGAATAGAAACGCTCCCACCGTGAGCTTGAATCGACAAGGTAAAACAACARTCGATTCTTCTGAAGTCAATAATTATAATTGTTATGCACCAATTAAAAATTGATTTATTGAGAAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTTGTAATCCTCGCCCTCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29123</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>117894</contig_pos>
        <strand>+</strand>
        <context>CARTCGATTC[G/T]TCTGAAGTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACGCTCCCACCGTGAGCTTGAATCGACAAGGTAAAACAACAATCGATTC</left_flank>
        <right_flank>TCTGAAGTCAATAATTATAATTGTTATGCACCAATTAAAAATTGATTTAT</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAATTTTTCAAAGAGGCCGTATGCAAGAAAATGGAAAACCGTTTTCCGATGTTTGGAAAATGATTTTCTGACAGTGTGAAAATATTTATTTTGATTTAAAAATGGATTCGGGGCTAAAAAATGACTAAAAATGCATGTAATCACTGTAAAAATTCTTGTCAGACTTTCAGAAAATCATTGGTTTTCCACTTTCTTGCATATGGCCTCAGATTCGGGTAACGCAATTTTCCAGCCAGATTCGAGTAAAATTCAAACCAAATTCGGAATTTTTTTCATTTTCTGACCAGATCCGACCGAGAAAGCTAATTTTTCAACCTGGTTCGGACAATTTTCTAACCAGATCTAGCCATTTATGCTCCGGAATTTTCCTGAATCTGGTTAGAAACCGATTACCAGAGAAAACACCCAGCGACAATAAAGCCACCAGACACTCAACAACCGAATAGAAACGCTCCCACCGTGAGCTTGAATCGACAAGGTAAAACAACAATCGATTCTTCTGAAGTCAATAATTATAATTGTTATGCACCAATTAAAAATTGATTTATTGAGAAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTTGTAATCCTCGCCCTCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGTCGGCACGCGACATTCCTGGCTTGATGCTCGAAAAGAATTCGGAACCCGTCATGAACACCAGCTCCACCGGGACTCAAAGTGAGCCGGCTCACACTGATGCTCACGACGTGTTTCACGAGATTCCATCGCAGTTCTGGTCTTATGACGTCTCTGGGAGCGATGTTGACTTCGATGATGACGAGGACGATCCAATGGCTGACTGAAAAAAATAACATTTTCTTTGAACCGATTTATCAAAGCATACCTGTGACATCCTTTTACTTCCGTTTTTGAATAAATTATCTGAATTTAATTATGAACCCCCAAAAACCCCCGGAAACAACAATTCTTACTAAAA</canonical>
            <polymorphic>GGAAATTTTTCAAAGAGGCCGTATGCAAGAAAATGGAAAACCGTTTTCCGATGTTTGGAAAATGATTTTCTGACAGTGTGAAAATATTTATTTTGATTTAAAAATGGATTCGGGGCTAAAAAATGACTAAAAATGCATGTAATCACTGTAAAAATTCTTGTCAGACTTTCAGAAAATCATTGGTTTTCCACTTTCTTGCATATGGCCTCAGATTCGGGTAACGCAATTTTCCAGCCAGATTCGAGTAAAATTCAAACCAAATTCGGAATTTTTTTCATTTTCTGACCAGATCCGACCGAGAAAGCTAATTTTTCAACCTGGTTCGGACAATTTTCTAACCAGATCTAGCCATTTATGCTCCGGAATTTTCCTGAATCTGGTTAGAAACCGATTACCAGAGAAAACACCCAGCGACAATAAAGCCACCAGACACTCAACAACCGAATAGAAACGCTCCCACCGTGAGCTTGAATCGACAAGGTAAAACAACAATCGATTCKTCTGAAGTCAATAATTATAATTGTTATGCACCAATTAAAAATTGATTTATTGAGAAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTTGTAATCCTCGCCCTCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGTCGGCACGCGACATTCCTGGCTTGATGCTCGAAAAGAATTCGGAACCCGTCATGAACACCAGCTCCACCGGGACTCAAAGTGAGCCGGCTCACACTGATGCTCACGACGTGTTTCACGAGATTCCATCGCAGTTCTGGTCTTATGACGTCTCTGGGAGCGATGTTGACTTCGATGATGACGAGGACGATCCAATGGCTGACTGAAAAAAATAACATTTTCTTTGAACCGATTTATCAAAGCATACCTGTGACATCCTTTTACTTCCGTTTTTGAATAAATTATCTGAATTTAATTATGAACCCCCAAAAACCCCCGGAAACAACAATTCTTACTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAATAAAGCCACCAGACACT</pcr_primer_p1>
		<pcr_primer_p2>ACATTGGATGTGACGACTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACAATAAAGCCACCAGACACTCAACAACCGAATAGAAACGCTCCCACCGTGAGCTTGAATCGACAAGGTAAAACAACAATCGATTCTTCTGAAGTCAATAATTATAATTGTTATGCACCAATTAAAAATTGATTTATTGAGAAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTTGTAATCCTCGCCCTCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGT</canonical_amplicon>
		<polymorphic_amplicon>ACAATAAAGCCACCAGACACTCAACAACCGAATAGAAACGCTCCCACCGTGAGCTTGAATCGACAAGGTAAAACAACAATCGATTCKTCTGAAGTCAATAATTATAATTGTTATGCACCAATTAAAAATTGATTTATTGAGAAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTTGTAATCCTCGCCCTCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29124</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>117908</contig_pos>
        <strand>+</strand>
        <context>GAAGTCAATA[A/T]TTATAATTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGCTTGAATCGACAAGGTAAAACAACAATCGATTCTTCTGAAGTCAATA</left_flank>
        <right_flank>TTATAATTGTTATGCACCAATTAAAAATTGATTTATTGAGAAACACATTG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGGCCGTATGCAAGAAAATGGAAAACCGTTTTCCGATGTTTGGAAAATGATTTTCTGACAGTGTGAAAATATTTATTTTGATTTAAAAATGGATTCGGGGCTAAAAAATGACTAAAAATGCATGTAATCACTGTAAAAATTCTTGTCAGACTTTCAGAAAATCATTGGTTTTCCACTTTCTTGCATATGGCCTCAGATTCGGGTAACGCAATTTTCCAGCCAGATTCGAGTAAAATTCAAACCAAATTCGGAATTTTTTTCATTTTCTGACCAGATCCGACCGAGAAAGCTAATTTTTCAACCTGGTTCGGACAATTTTCTAACCAGATCTAGCCATTTATGCTCCGGAATTTTCCTGAATCTGGTTAGAAACCGATTACCAGAGAAAACACCCAGCGACAATAAAGCCACCAGACACTCAACAACCGAATAGAAACGCTCCCACCGTGAGCTTGAATCGACAAGGTAAAACAACAATCGATTCTTCTGAAGTCAATAATTATAATTGTTATGCACCAATTAAAAATTGATTTATTGAGAAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTTGTAATCCTCGCCCTCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGTCGGCACGCGACATTCCTGGCTTGATGCTCGAAAAGAATTCGGAACCCGTCATGAACACCAGCTCCACCGGGACTCAAAGTGAGCCGGCTCACACTGATGCTCACGACGTGTTTCACGAGATTCCATCGCAGTTCTGGTCTTATGACGTCTCTGGGAGCGATGTTGACTTCGATGATGACGAGGACGATCCAATGGCTGACTGAAAAAAATAACATTTTCTTTGAACCGATTTATCAAAGCATACCTGTGACATCCTTTTACTTCCGTTTTTGAATAAATTATCTGAATTTAATTATGAACCCCCAAAAACCCCCGGAAACAACAATTCTTACTAAAATATCAGAAGAAGAG</canonical>
            <polymorphic>GAGGCCGTATGCAAGAAAATGGAAAACCGTTTTCCGATGTTTGGAAAATGATTTTCTGACAGTGTGAAAATATTTATTTTGATTTAAAAATGGATTCGGGGCTAAAAAATGACTAAAAATGCATGTAATCACTGTAAAAATTCTTGTCAGACTTTCAGAAAATCATTGGTTTTCCACTTTCTTGCATATGGCCTCAGATTCGGGTAACGCAATTTTCCAGCCAGATTCGAGTAAAATTCAAACCAAATTCGGAATTTTTTTCATTTTCTGACCAGATCCGACCGAGAAAGCTAATTTTTCAACCTGGTTCGGACAATTTTCTAACCAGATCTAGCCATTTATGCTCCGGAATTTTCCTGAATCTGGTTAGAAACCGATTACCAGAGAAAACACCCAGCGACAATAAAGCCACCAGACACTCAACAACCGAATAGAAACGCTCCCACCGTGAGCTTGAATCGACAAGGTAAAACAACAATCGATTCTTCTGAAGTCAATAWTTATAATTGTTATGCACCAATTAAAAATTGATTTATTGAGAAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTTGTAATCCTCGCCCTCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGTCGGCACGCGACATTCCTGGCTTGATGCTCGAAAAGAATTCGGAACCCGTCATGAACACCAGCTCCACCGGGACTCAAAGTGAGCCGGCTCACACTGATGCTCACGACGTGTTTCACGAGATTCCATCGCAGTTCTGGTCTTATGACGTCTCTGGGAGCGATGTTGACTTCGATGATGACGAGGACGATCCAATGGCTGACTGAAAAAAATAACATTTTCTTTGAACCGATTTATCAAAGCATACCTGTGACATCCTTTTACTTCCGTTTTTGAATAAATTATCTGAATTTAATTATGAACCCCCAAAAACCCCCGGAAACAACAATTCTTACTAAAATATCAGAAGAAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>241 159 149 138 72 40 35 33 28 24 22 14 11 9 7 7 6 5</canonical_bands>
                <polymorphic_bands>241 159 155 138 72 40 35 33 28 24 22 14 11 9 7 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAATAAAGCCACCAGACACT</pcr_primer_p1>
		<pcr_primer_p2>ACATTGGATGTGACGACTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACAATAAAGCCACCAGACACTCAACAACCGAATAGAAACGCTCCCACCGTGAGCTTGAATCGACAAGGTAAAACAACAATCGATTCTTCTGAAGTCAATAATTATAATTGTTATGCACCAATTAAAAATTGATTTATTGAGAAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTTGTAATCCTCGCCCTCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGT</canonical_amplicon>
		<polymorphic_amplicon>ACAATAAAGCCACCAGACACTCAACAACCGAATAGAAACGCTCCCACCGTGAGCTTGAATCGACAAGGTAAAACAACAATCGATTCTTCTGAAGTCAATAWTTATAATTGTTATGCACCAATTAAAAATTGATTTATTGAGAAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTTGTAATCCTCGCCCTCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29125</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>117999</contig_pos>
        <strand>+</strand>
        <context>TTAAAAGGTT[A/G]TAATCCTCGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTT</left_flank>
        <right_flank>TAATCCTCGCCCTCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATTCGGGGCTAAAAAATGACTAAAAATGCATGTAATCACTGTAAAAATTCTTGTCAGACTTTCAGAAAATCATTGGTTTTCCACTTTCTTGCATATGGCCTCAGATTCGGGTAACGCAATTTTCCAGCCAGATTCGAGTAAAATTCAAACCAAATTCGGAATTTTTTTCATTTTCTGACCAGATCCGACCGAGAAAGCTAATTTTTCAACCTGGTTCGGACAATTTTCTAACCAGATCTAGCCATTTATGCTCCGGAATTTTCCTGAATCTGGTTAGAAACCGATTACCAGAGAAAACACCCAGCGACAATAAAGCCACCAGACACTCAACAACCGAATAGAAACGCTCCCACCGTGAGCTTGAATCGACAAGGTAAAACAACAATCGATTCTTCTGAAGTCAATAATTATAATTGTTATGCACCAATTAAAAATTGATTTATTGAGAAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTTGTAATCCTCGCCCTCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGTCGGCACGCGACATTCCTGGCTTGATGCTCGAAAAGAATTCGGAACCCGTCATGAACACCAGCTCCACCGGGACTCAAAGTGAGCCGGCTCACACTGATGCTCACGACGTGTTTCACGAGATTCCATCGCAGTTCTGGTCTTATGACGTCTCTGGGAGCGATGTTGACTTCGATGATGACGAGGACGATCCAATGGCTGACTGAAAAAAATAACATTTTCTTTGAACCGATTTATCAAAGCATACCTGTGACATCCTTTTACTTCCGTTTTTGAATAAATTATCTGAATTTAATTATGAACCCCCAAAAACCCCCGGAAACAACAATTCTTACTAAAATATCAGAAGAAGAGAAGCGATTATGAAGAACAATTATAAACACAAAATTCAAACATGGGATGATTTGAAAACGGTTTTTTTCCGTTTAAGAAAACTTTAAAACTT</canonical>
            <polymorphic>GGATTCGGGGCTAAAAAATGACTAAAAATGCATGTAATCACTGTAAAAATTCTTGTCAGACTTTCAGAAAATCATTGGTTTTCCACTTTCTTGCATATGGCCTCAGATTCGGGTAACGCAATTTTCCAGCCAGATTCGAGTAAAATTCAAACCAAATTCGGAATTTTTTTCATTTTCTGACCAGATCCGACCGAGAAAGCTAATTTTTCAACCTGGTTCGGACAATTTTCTAACCAGATCTAGCCATTTATGCTCCGGAATTTTCCTGAATCTGGTTAGAAACCGATTACCAGAGAAAACACCCAGCGACAATAAAGCCACCAGACACTCAACAACCGAATAGAAACGCTCCCACCGTGAGCTTGAATCGACAAGGTAAAACAACAATCGATTCTTCTGAAGTCAATAATTATAATTGTTATGCACCAATTAAAAATTGATTTATTGAGAAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTTRTAATCCTCGCCCTCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGTCGGCACGCGACATTCCTGGCTTGATGCTCGAAAAGAATTCGGAACCCGTCATGAACACCAGCTCCACCGGGACTCAAAGTGAGCCGGCTCACACTGATGCTCACGACGTGTTTCACGAGATTCCATCGCAGTTCTGGTCTTATGACGTCTCTGGGAGCGATGTTGACTTCGATGATGACGAGGACGATCCAATGGCTGACTGAAAAAAATAACATTTTCTTTGAACCGATTTATCAAAGCATACCTGTGACATCCTTTTACTTCCGTTTTTGAATAAATTATCTGAATTTAATTATGAACCCCCAAAAACCCCCGGAAACAACAATTCTTACTAAAATATCAGAAGAAGAGAAGCGATTATGAAGAACAATTATAAACACAAAATTCAAACATGGGATGATTTGAAAACGGTTTTTTTCCGTTTAAGAAAACTTTAAAACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATTTATTGAGAAACACATTGA</pcr_primer_p1>
		<pcr_primer_p2>GATGGAATCTCGTGAAACAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGATTTATTGAGAAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTTGTAATCCTCGCCCTCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGTCGGCACGCGACATTCCTGGCTTGATGCTCGAAAAGAATTCGGAACCCGTCATGAACACCAGCTCCACCGGGACTCAAAGTGAGCCGGCTCACACTGATGCTCACGACGTGTTTCACGAGATTCCATC</canonical_amplicon>
		<polymorphic_amplicon>TGATTTATTGAGAAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTTRTAATCCTCGCCCTCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGTCGGCACGCGACATTCCTGGCTTGATGCTCGAAAAGAATTCGGAACCCGTCATGAACACCAGCTCCACCGGGACTCAAAGTGAGCCGGCTCACACTGATGCTCACGACGTGTTTCACGAGATTCCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29126</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>118012</contig_pos>
        <strand>+</strand>
        <context>ATCCTCGCCC[C/T]CTTCCCCTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACACCATAAAGATTATAAAATACATTTTTAAAAGGTTGTAATCCTCGCCC</left_flank>
        <right_flank>CTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGTCGGCA</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATGACTAAAAATGCATGTAATCACTGTAAAAATTCTTGTCAGACTTTCAGAAAATCATTGGTTTTCCACTTTCTTGCATATGGCCTCAGATTCGGGTAACGCAATTTTCCAGCCAGATTCGAGTAAAATTCAAACCAAATTCGGAATTTTTTTCATTTTCTGACCAGATCCGACCGAGAAAGCTAATTTTTCAACCTGGTTCGGACAATTTTCTAACCAGATCTAGCCATTTATGCTCCGGAATTTTCCTGAATCTGGTTAGAAACCGATTACCAGAGAAAACACCCAGCGACAATAAAGCCACCAGACACTCAACAACCGAATAGAAACGCTCCCACCGTGAGCTTGAATCGACAAGGTAAAACAACAATCGATTCTTCTGAAGTCAATAATTATAATTGTTATGCACCAATTAAAAATTGATTTATTGAGAAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTTGTAATCCTCGCCCTCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGTCGGCACGCGACATTCCTGGCTTGATGCTCGAAAAGAATTCGGAACCCGTCATGAACACCAGCTCCACCGGGACTCAAAGTGAGCCGGCTCACACTGATGCTCACGACGTGTTTCACGAGATTCCATCGCAGTTCTGGTCTTATGACGTCTCTGGGAGCGATGTTGACTTCGATGATGACGAGGACGATCCAATGGCTGACTGAAAAAAATAACATTTTCTTTGAACCGATTTATCAAAGCATACCTGTGACATCCTTTTACTTCCGTTTTTGAATAAATTATCTGAATTTAATTATGAACCCCCAAAAACCCCCGGAAACAACAATTCTTACTAAAATATCAGAAGAAGAGAAGCGATTATGAAGAACAATTATAAACACAAAATTCAAACATGGGATGATTTGAAAACGGTTTTTTTCCGTTTAAGAAAACTTTAAAACTTCGAATTCTGCTTT</canonical>
            <polymorphic>AAAAATGACTAAAAATGCATGTAATCACTGTAAAAATTCTTGTCAGACTTTCAGAAAATCATTGGTTTTCCACTTTCTTGCATATGGCCTCAGATTCGGGTAACGCAATTTTCCAGCCAGATTCGAGTAAAATTCAAACCAAATTCGGAATTTTTTTCATTTTCTGACCAGATCCGACCGAGAAAGCTAATTTTTCAACCTGGTTCGGACAATTTTCTAACCAGATCTAGCCATTTATGCTCCGGAATTTTCCTGAATCTGGTTAGAAACCGATTACCAGAGAAAACACCCAGCGACAATAAAGCCACCAGACACTCAACAACCGAATAGAAACGCTCCCACCGTGAGCTTGAATCGACAAGGTAAAACAACAATCGATTCTTCTGAAGTCAATAATTATAATTGTTATGCACCAATTAAAAATTGATTTATTGAGAAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTTGTAATCCTCGCCCYCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGTCGGCACGCGACATTCCTGGCTTGATGCTCGAAAAGAATTCGGAACCCGTCATGAACACCAGCTCCACCGGGACTCAAAGTGAGCCGGCTCACACTGATGCTCACGACGTGTTTCACGAGATTCCATCGCAGTTCTGGTCTTATGACGTCTCTGGGAGCGATGTTGACTTCGATGATGACGAGGACGATCCAATGGCTGACTGAAAAAAATAACATTTTCTTTGAACCGATTTATCAAAGCATACCTGTGACATCCTTTTACTTCCGTTTTTGAATAAATTATCTGAATTTAATTATGAACCCCCAAAAACCCCCGGAAACAACAATTCTTACTAAAATATCAGAAGAAGAGAAGCGATTATGAAGAACAATTATAAACACAAAATTCAAACATGGGATGATTTGAAAACGGTTTTTTTCCGTTTAAGAAAACTTTAAAACTTCGAATTCTGCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATTTATTGAGAAACACATTGA</pcr_primer_p1>
		<pcr_primer_p2>GATGGAATCTCGTGAAACAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGATTTATTGAGAAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTTGTAATCCTCGCCCTCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGTCGGCACGCGACATTCCTGGCTTGATGCTCGAAAAGAATTCGGAACCCGTCATGAACACCAGCTCCACCGGGACTCAAAGTGAGCCGGCTCACACTGATGCTCACGACGTGTTTCACGAGATTCCATC</canonical_amplicon>
		<polymorphic_amplicon>TGATTTATTGAGAAACACATTGATCACACCATAAAGATTATAAAATACATTTTTAAAAGGTTGTAATCCTCGCCCYCTTCCCCTGACTCGTCCTCCATTCCGAAGTCGTCACATCCAATGTCGGCACGCGACATTCCTGGCTTGATGCTCGAAAAGAATTCGGAACCCGTCATGAACACCAGCTCCACCGGGACTCAAAGTGAGCCGGCTCACACTGATGCTCACGACGTGTTTCACGAGATTCCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29127</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>120205</contig_pos>
        <strand></strand>
        <context>ccctagcttg[A/G]ttgaatagaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCTCATTTGGATGAGTTCATACAACTACAAAATTGAAGCCCTAGCTTG</left_flank>
        <right_flank>TTGAATAGAACTAGAAAATTTCATGCTCATTGAGCAAAGGCTACTGAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAACTAAACAAATATTCGTGATATTATGACAAACATTTTATCAGTTAACAAATTTTTGATATCTAATATGGAAATTGAGATAATAGAGCTCAAAGTGCAAGTATAAGGTGGCCTTTTATCAAAGCCAATATGAAAAGCGAGATAAGTTCAATAAGAATGAGAATAAAATTCAGTGATAAAAAAGGTAAATTAAGTTATTTATAAAACAAATCACAAAGATTTAGTTCATGAAAAATCCAACTTATCGAATGTCTCCAATGTTTTCAAATTTTAGCCAATATGTGTATTTCCTGTAAGAAATATCAAAAAGTAAGCAATCTTCACTTTTGTAGTTAACATCTTTTTCGTGCAAATTAATCCGAACGAGATTTCCCGCTTGAAATCGAACAAGTGCCAATTCATCCAAAAATAACACTGCCTTCAGAGTAATGACATTTTCAAATGATTTTTCTCATTTGGATGAGTTCATACAACTACAAAATTGAAGCCCTAGCTTGATTGAATAGAACTAGAAAATTTCATGCTCATTGAGCAAAGGCTACTGAATTTTTAGACAACTAAAGTTTGCGTTTTCTCACTGAAAAAAAGGTGTAATTGAAAATTTTCTGGTATTGAACGGGGAAAACCGCAGACACAGAAAAGAAATATCTCTGAATTTGATCTAAAAGGTAAGTTGGTAGAATTCTGTTGAAAGACGAAAAGAGAACATCAAGCATGGATGAGGACGAGAAAACGAGATGATAAATGCCGTAGATAGGCTGCATCGTTCTCTCAAGGACAGAATGCAAGCGACACGATTCGTTTTTTTCCGATGCCCACTTCTTTTATCTCGGAGTGTTGGCGCTGGCCGATGGTAGGCAGAAAGAAAACAAAACTCGTTTTTTTATTGAGATGAGAAATTTACAGCGGCAAAGAATGACACGAACTGAGACGGTCCGAAAAGAATTTATGTTCTATTTCTTTCATTTTTCCTTGGCAACGTGAAAATCGAAAAATAA</canonical>
            <polymorphic>ATAAACTAAACAAATATTCGTGATATTATGACAAACATTTTATCAGTTAACAAATTTTTGATATCTAATATGGAAATTGAGATAATAGAGCTCAAAGTGCAAGTATAAGGTGGCCTTTTATCAAAGCCAATATGAAAAGCGAGATAAGTTCAATAAGAATGAGAATAAAATTCAGTGATAAAAAAGGTAAATTAAGTTATTTATAAAACAAATCACAAAGATTTAGTTCATGAAAAATCCAACTTATCGAATGTCTCCAATGTTTTCAAATTTTAGCCAATATGTGTATTTCCTGTAAGAAATATCAAAAAGTAAGCAATCTTCACTTTTGTAGTTAACATCTTTTTCGTGCAAATTAATCCGAACGAGATTTCCCGCTTGAAATCGAACAAGTGCCAATTCATCCAAAAATAACACTGCCTTCAGAGTAATGACATTTTCAAATGATTTTTCTCATTTGGATGAGTTCATACAACTACAAAATTGAAGCCCTAGCTTGRTTGAATAGAACTAGAAAATTTCATGCTCATTGAGCAAAGGCTACTGAATTTTTAGACAACTAAAGTTTGCGTTTTCTCACTGAAAAAAAGGTGTAATTGAAAATTTTCTGGTATTGAACGGGGAAAACCGCAGACACAGAAAAGAAATATCTCTGAATTTGATCTAAAAGGTAAGTTGGTAGAATTCTGTTGAAAGACGAAAAGAGAACATCAAGCATGGATGAGGACGAGAAAACGAGATGATAAATGCCGTAGATAGGCTGCATCGTTCTCTCAAGGACAGAATGCAAGCGACACGATTCGTTTTTTTCCGATGCCCACTTCTTTTATCTCGGAGTGTTGGCGCTGGCCGATGGTAGGCAGAAAGAAAACAAAACTCGTTTTTTTATTGAGATGAGAAATTTACAGCGGCAAAGAATGACACGAACTGAGACGGTCCGAAAAGAATTTATGTTCTATTTCTTTCATTTTTCCTTGGCAACGTGAAAATCGAAAAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATAACACTGCCTTCAGAGTA</pcr_primer_p1>
		<pcr_primer_p2>TCAGAGATATTTCTTTTCTGTGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAATAACACTGCCTTCAGAGTAATGACATTTTCAAATGATTTTTCTCATTTGGATGAGTTCATACAACTACAAAATTGAAGCCCTAGCTTGATTGAATAGAACTAGAAAATTTCATGCTCATTGAGCAAAGGCTACTGAATTTTTAGACAACTAAAGTTTGCGTTTTCTCACTGAAAAAAAGGTGTAATTGAAAATTTTCTGGTATTGAACGGGGAAAACCGCAGACACAGAAAAGAAATATCTCTGA</canonical_amplicon>
		<polymorphic_amplicon>AAAATAACACTGCCTTCAGAGTAATGACATTTTCAAATGATTTTTCTCATTTGGATGAGTTCATACAACTACAAAATTGAAGCCCTAGCTTGRTTGAATAGAACTAGAAAATTTCATGCTCATTGAGCAAAGGCTACTGAATTTTTAGACAACTAAAGTTTGCGTTTTCTCACTGAAAAAAAGGTGTAATTGAAAATTTTCTGGTATTGAACGGGGAAAACCGCAGACACAGAAAAGAAATATCTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29128</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>149245</contig_pos>
        <strand></strand>
        <context>gcgcgctctg[C/T]tgcaaaaaag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTCTGAAAAAAACTTGAATATTTCAAAGGTAATGCAAGCGCGCTCTG</left_flank>
        <right_flank>TGCAAAAAAGTTTCAATCCGGGACAGTTCGACACCGCACAATTCGAATCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAGGGTACGATGAATTCGAACTTTCCCGAAATCGGACTGTCCCGAAAACGAACTCGTTCGAATTAGAACTGTCCCTTTATTGAACACGTCCAGAATAGAACAAGTACAGAATCAAACCGTTACAGATTCGAATTGTGCGGTGTCGAACTGGGCCGGATTGGAACTTTTTTTGCAACAGAGCGCGCTTGCATAAATTTTATTTCTCAATTATTTTTGTTAACAAATTTTTCTTTTTTTCTCCAGAAAAACTTCTTTTAAAGAATTTTGGATGTTTCGCGGGTTTATTTTTTTGTTTTGAGAATAAACAATTCTTACAGAAATGGCCCCCCGTAAAAATAAGCCGATTATCCAAGTTTTTCTTTTTTTTTTACATATATTTTCTACTTCTTAAATTGTTTTTTCCTCGCTGTATTGAAAAAAAAAAAGTTTTCTTTGTTGTAAAAATGCTTTTTTCTGAAAAAAACTTGAATATTTCAAAGGTAATGCAAGCGCGCTCTGCTGCAAAAAAGTTTCAATCCGGGACAGTTCGACACCGCACAATTCGAATCTGTAACGGTTTGATTCTGTACTTGTTCTATTCTGGACGTGTTCAATAAAGGGACAGTTCTAATTCGAACGAGTTCGTTTTCGGGACAGTTCGATTTCGGGAAAGTTCGAATTCATCGTACCCTCGTTTTTTCTAGACCTAATCTTTGCAAAATCTTTAGATACTCAAAACAAAGGTAATAGATTGTGTGGCATCAGTTCAAACGTACCGTAAATACTCTAATTGTATGTAGCATGCCTCTAAGTTCAAGCTTATATATCTCATTTTCTGTGAAAATTAGTCAAAAGTGTTTAATTAACAAAATGTTCATTATAAGATGAAACTGTATTGTCATCTAATAAATTTCTTATATCTTTCACAAAAACAGAGATACATTGGATTGAGATTAGGGCTCATTTGATAGGAGTGTTTACGGTGGGTTAACATTTTTGACAAGGTAGAAAAAGTAATTA</canonical>
            <polymorphic>CGAGGGTACGATGAATTCGAACTTTCCCGAAATCGGACTGTCCCGAAAACGAACTCGTTCGAATTAGAACTGTCCCTTTATTGAACACGTCCAGAATAGAACAAGTACAGAATCAAACCGTTACAGATTCGAATTGTGCGGTGTCGAACTGGGCCGGATTGGAACTTTTTTTGCAACAGAGCGCGCTTGCATAAATTTTATTTCTCAATTATTTTTGTTAACAAATTTTTCTTTTTTTCTCCAGAAAAACTTCTTTTAAAGAATTTTGGATGTTTCGCGGGTTTATTTTTTTGTTTTGAGAATAAACAATTCTTACAGAAATGGCCCCCCGTAAAAATAAGCCGATTATCCAAGTTTTTCTTTTTTTTTTACATATATTTTCTACTTCTTAAATTGTTTTTTCCTCGCTGTATTGAAAAAAAAAAAGTTTTCTTTGTTGTAAAAATGCTTTTTTCTGAAAAAAACTTGAATATTTCAAAGGTAATGCAAGCGCGCTCTGYTGCAAAAAAGTTTCAATCCGGGACAGTTCGACACCGCACAATTCGAATCTGTAACGGTTTGATTCTGTACTTGTTCTATTCTGGACGTGTTCAATAAAGGGACAGTTCTAATTCGAACGAGTTCGTTTTCGGGACAGTTCGATTTCGGGAAAGTTCGAATTCATCGTACCCTCGTTTTTTCTAGACCTAATCTTTGCAAAATCTTTAGATACTCAAAACAAAGGTAATAGATTGTGTGGCATCAGTTCAAACGTACCGTAAATACTCTAATTGTATGTAGCATGCCTCTAAGTTCAAGCTTATATATCTCATTTTCTGTGAAAATTAGTCAAAAGTGTTTAATTAACAAAATGTTCATTATAAGATGAAACTGTATTGTCATCTAATAAATTTCTTATATCTTTCACAAAAACAGAGATACATTGGATTGAGATTAGGGCTCATTTGATAGGAGTGTTTACGGTGGGTTAACATTTTTGACAAGGTAGAAAAAGTAATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCTCGCTGTATTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CACAATCTATTACCTTTGTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>336</pcr_amplicon_size>
		<canonical_amplicon>TTCCTCGCTGTATTGAAAAAAAAAAAGTTTTCTTTGTTGTAAAAATGCTTTTTTCTGAAAAAAACTTGAATATTTCAAAGGTAATGCAAGCGCGCTCTGCTGCAAAAAAGTTTCAATCCGGGACAGTTCGACACCGCACAATTCGAATCTGTAACGGTTTGATTCTGTACTTGTTCTATTCTGGACGTGTTCAATAAAGGGACAGTTCTAATTCGAACGAGTTCGTTTTCGGGACAGTTCGATTTCGGGAAAGTTCGAATTCATCGTACCCTCGTTTTTTCTAGACCTAATCTTTGCAAAATCTTTAGATACTCAAAACAAAGGTAATAGATTGTG</canonical_amplicon>
		<polymorphic_amplicon>TTCCTCGCTGTATTGAAAAAAAAAAAGTTTTCTTTGTTGTAAAAATGCTTTTTTCTGAAAAAAACTTGAATATTTCAAAGGTAATGCAAGCGCGCTCTGYTGCAAAAAAGTTTCAATCCGGGACAGTTCGACACCGCACAATTCGAATCTGTAACGGTTTGATTCTGTACTTGTTCTATTCTGGACGTGTTCAATAAAGGGACAGTTCTAATTCGAACGAGTTCGTTTTCGGGACAGTTCGATTTCGGGAAAGTTCGAATTCATCGTACCCTCGTTTTTTCTAGACCTAATCTTTGCAAAATCTTTAGATACTCAAAACAAAGGTAATAGATTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29129</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>149286</contig_pos>
        <strand></strand>
        <context>acaccgcaca[A/G]ttcgaatctg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCGCTCTGCTGCAAAAAAGTTTCAATCCGGGACAGTTCGACACCGCACA</left_flank>
        <right_flank>TTCGAATCTGTAACGGTTTGATTCTGTACTTGTTCTATTCTGGACGTGTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCGAAAACGAACTCGTTCGAATTAGAACTGTCCCTTTATTGAACACGTCCAGAATAGAACAAGTACAGAATCAAACCGTTACAGATTCGAATTGTGCGGTGTCGAACTGGGCCGGATTGGAACTTTTTTTGCAACAGAGCGCGCTTGCATAAATTTTATTTCTCAATTATTTTTGTTAACAAATTTTTCTTTTTTTCTCCAGAAAAACTTCTTTTAAAGAATTTTGGATGTTTCGCGGGTTTATTTTTTTGTTTTGAGAATAAACAATTCTTACAGAAATGGCCCCCCGTAAAAATAAGCCGATTATCCAAGTTTTTCTTTTTTTTTTACATATATTTTCTACTTCTTAAATTGTTTTTTCCTCGCTGTATTGAAAAAAAAAAAGTTTTCTTTGTTGTAAAAATGCTTTTTTCTGAAAAAAACTTGAATATTTCAAAGGTAATGCAAGCGCGCTCTGCTGCAAAAAAGTTTCAATCCGGGACAGTTCGACACCGCACAATTCGAATCTGTAACGGTTTGATTCTGTACTTGTTCTATTCTGGACGTGTTCAATAAAGGGACAGTTCTAATTCGAACGAGTTCGTTTTCGGGACAGTTCGATTTCGGGAAAGTTCGAATTCATCGTACCCTCGTTTTTTCTAGACCTAATCTTTGCAAAATCTTTAGATACTCAAAACAAAGGTAATAGATTGTGTGGCATCAGTTCAAACGTACCGTAAATACTCTAATTGTATGTAGCATGCCTCTAAGTTCAAGCTTATATATCTCATTTTCTGTGAAAATTAGTCAAAAGTGTTTAATTAACAAAATGTTCATTATAAGATGAAACTGTATTGTCATCTAATAAATTTCTTATATCTTTCACAAAAACAGAGATACATTGGATTGAGATTAGGGCTCATTTGATAGGAGTGTTTACGGTGGGTTAACATTTTTGACAAGGTAGAAAAAGTAATTAACAAGATCTATCTTCTTTTTCGAATTTTGTGCCGCGATTTT</canonical>
            <polymorphic>CCCGAAAACGAACTCGTTCGAATTAGAACTGTCCCTTTATTGAACACGTCCAGAATAGAACAAGTACAGAATCAAACCGTTACAGATTCGAATTGTGCGGTGTCGAACTGGGCCGGATTGGAACTTTTTTTGCAACAGAGCGCGCTTGCATAAATTTTATTTCTCAATTATTTTTGTTAACAAATTTTTCTTTTTTTCTCCAGAAAAACTTCTTTTAAAGAATTTTGGATGTTTCGCGGGTTTATTTTTTTGTTTTGAGAATAAACAATTCTTACAGAAATGGCCCCCCGTAAAAATAAGCCGATTATCCAAGTTTTTCTTTTTTTTTTACATATATTTTCTACTTCTTAAATTGTTTTTTCCTCGCTGTATTGAAAAAAAAAAAGTTTTCTTTGTTGTAAAAATGCTTTTTTCTGAAAAAAACTTGAATATTTCAAAGGTAATGCAAGCGCGCTCTGCTGCAAAAAAGTTTCAATCCGGGACAGTTCGACACCGCACARTTCGAATCTGTAACGGTTTGATTCTGTACTTGTTCTATTCTGGACGTGTTCAATAAAGGGACAGTTCTAATTCGAACGAGTTCGTTTTCGGGACAGTTCGATTTCGGGAAAGTTCGAATTCATCGTACCCTCGTTTTTTCTAGACCTAATCTTTGCAAAATCTTTAGATACTCAAAACAAAGGTAATAGATTGTGTGGCATCAGTTCAAACGTACCGTAAATACTCTAATTGTATGTAGCATGCCTCTAAGTTCAAGCTTATATATCTCATTTTCTGTGAAAATTAGTCAAAAGTGTTTAATTAACAAAATGTTCATTATAAGATGAAACTGTATTGTCATCTAATAAATTTCTTATATCTTTCACAAAAACAGAGATACATTGGATTGAGATTAGGGCTCATTTGATAGGAGTGTTTACGGTGGGTTAACATTTTTGACAAGGTAGAAAAAGTAATTAACAAGATCTATCTTCTTTTTCGAATTTTGTGCCGCGATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>148 111 107 84 70 70 62 54 48 48 46 38 27 20 19 18 17 13</canonical_bands>
                <polymorphic_bands>218 111 107 84 70 62 54 48 48 46 38 27 20 19 18 17 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCTCGCTGTATTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CACAATCTATTACCTTTGTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>336</pcr_amplicon_size>
		<canonical_amplicon>TTCCTCGCTGTATTGAAAAAAAAAAAGTTTTCTTTGTTGTAAAAATGCTTTTTTCTGAAAAAAACTTGAATATTTCAAAGGTAATGCAAGCGCGCTCTGCTGCAAAAAAGTTTCAATCCGGGACAGTTCGACACCGCACAATTCGAATCTGTAACGGTTTGATTCTGTACTTGTTCTATTCTGGACGTGTTCAATAAAGGGACAGTTCTAATTCGAACGAGTTCGTTTTCGGGACAGTTCGATTTCGGGAAAGTTCGAATTCATCGTACCCTCGTTTTTTCTAGACCTAATCTTTGCAAAATCTTTAGATACTCAAAACAAAGGTAATAGATTGTG</canonical_amplicon>
		<polymorphic_amplicon>TTCCTCGCTGTATTGAAAAAAAAAAAGTTTTCTTTGTTGTAAAAATGCTTTTTTCTGAAAAAAACTTGAATATTTCAAAGGTAATGCAAGCGCGCTCTGCTGCAAAAAAGTTTCAATCCGGGACAGTTCGACACCGCACARTTCGAATCTGTAACGGTTTGATTCTGTACTTGTTCTATTCTGGACGTGTTCAATAAAGGGACAGTTCTAATTCGAACGAGTTCGTTTTCGGGACAGTTCGATTTCGGGAAAGTTCGAATTCATCGTACCCTCGTTTTTTCTAGACCTAATCTTTGCAAAATCTTTAGATACTCAAAACAAAGGTAATAGATTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29130</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>149338</contig_pos>
        <strand></strand>
        <context>ggacgtgttc[A/G]rwaaagggac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGAATCTGTAACGGTTTGATTCTGTACTTGTTCTATTCTGGACGTGTTC</left_flank>
        <right_flank>ATAAAGGGACAGTTCTAATTCGAACGAGTTCGTTTTCGGGACAGTTCGAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATAGAACAAGTACAGAATCAAACCGTTACAGATTCGAATTGTGCGGTGTCGAACTGGGCCGGATTGGAACTTTTTTTGCAACAGAGCGCGCTTGCATAAATTTTATTTCTCAATTATTTTTGTTAACAAATTTTTCTTTTTTTCTCCAGAAAAACTTCTTTTAAAGAATTTTGGATGTTTCGCGGGTTTATTTTTTTGTTTTGAGAATAAACAATTCTTACAGAAATGGCCCCCCGTAAAAATAAGCCGATTATCCAAGTTTTTCTTTTTTTTTTACATATATTTTCTACTTCTTAAATTGTTTTTTCCTCGCTGTATTGAAAAAAAAAAAGTTTTCTTTGTTGTAAAAATGCTTTTTTCTGAAAAAAACTTGAATATTTCAAAGGTAATGCAAGCGCGCTCTGCTGCAAAAAAGTTTCAATCCGGGACAGTTCGACACCGCACAATTCGAATCTGTAACGGTTTGATTCTGTACTTGTTCTATTCTGGACGTGTTCAATAAAGGGACAGTTCTAATTCGAACGAGTTCGTTTTCGGGACAGTTCGATTTCGGGAAAGTTCGAATTCATCGTACCCTCGTTTTTTCTAGACCTAATCTTTGCAAAATCTTTAGATACTCAAAACAAAGGTAATAGATTGTGTGGCATCAGTTCAAACGTACCGTAAATACTCTAATTGTATGTAGCATGCCTCTAAGTTCAAGCTTATATATCTCATTTTCTGTGAAAATTAGTCAAAAGTGTTTAATTAACAAAATGTTCATTATAAGATGAAACTGTATTGTCATCTAATAAATTTCTTATATCTTTCACAAAAACAGAGATACATTGGATTGAGATTAGGGCTCATTTGATAGGAGTGTTTACGGTGGGTTAACATTTTTGACAAGGTAGAAAAAGTAATTAACAAGATCTATCTTCTTTTTCGAATTTTGTGCCGCGATTTTGAATTTTTTTTTTCTTCTAGAATGAAAATACCACCCGTTAAAAACCAGATTC</canonical>
            <polymorphic>GAATAGAACAAGTACAGAATCAAACCGTTACAGATTCGAATTGTGCGGTGTCGAACTGGGCCGGATTGGAACTTTTTTTGCAACAGAGCGCGCTTGCATAAATTTTATTTCTCAATTATTTTTGTTAACAAATTTTTCTTTTTTTCTCCAGAAAAACTTCTTTTAAAGAATTTTGGATGTTTCGCGGGTTTATTTTTTTGTTTTGAGAATAAACAATTCTTACAGAAATGGCCCCCCGTAAAAATAAGCCGATTATCCAAGTTTTTCTTTTTTTTTTACATATATTTTCTACTTCTTAAATTGTTTTTTCCTCGCTGTATTGAAAAAAAAAAAGTTTTCTTTGTTGTAAAAATGCTTTTTTCTGAAAAAAACTTGAATATTTCAAAGGTAATGCAAGCGCGCTCTGCTGCAAAAAAGTTTCAATCCGGGACAGTTCGACACCGCACAATTCGAATCTGTAACGGTTTGATTCTGTACTTGTTCTATTCTGGACGTGTTCRATAAAGGGACAGTTCTAATTCGAACGAGTTCGTTTTCGGGACAGTTCGATTTCGGGAAAGTTCGAATTCATCGTACCCTCGTTTTTTCTAGACCTAATCTTTGCAAAATCTTTAGATACTCAAAACAAAGGTAATAGATTGTGTGGCATCAGTTCAAACGTACCGTAAATACTCTAATTGTATGTAGCATGCCTCTAAGTTCAAGCTTATATATCTCATTTTCTGTGAAAATTAGTCAAAAGTGTTTAATTAACAAAATGTTCATTATAAGATGAAACTGTATTGTCATCTAATAAATTTCTTATATCTTTCACAAAAACAGAGATACATTGGATTGAGATTAGGGCTCATTTGATAGGAGTGTTTACGGTGGGTTAACATTTTTGACAAGGTAGAAAAAGTAATTAACAAGATCTATCTTCTTTTTCGAATTTTGTGCCGCGATTTTGAATTTTTTTTTTCTTCTAGAATGAAAATACCACCCGTTAAAAACCAGATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCTCGCTGTATTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CACAATCTATTACCTTTGTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>336</pcr_amplicon_size>
		<canonical_amplicon>TTCCTCGCTGTATTGAAAAAAAAAAAGTTTTCTTTGTTGTAAAAATGCTTTTTTCTGAAAAAAACTTGAATATTTCAAAGGTAATGCAAGCGCGCTCTGCTGCAAAAAAGTTTCAATCCGGGACAGTTCGACACCGCACAATTCGAATCTGTAACGGTTTGATTCTGTACTTGTTCTATTCTGGACGTGTTCAATAAAGGGACAGTTCTAATTCGAACGAGTTCGTTTTCGGGACAGTTCGATTTCGGGAAAGTTCGAATTCATCGTACCCTCGTTTTTTCTAGACCTAATCTTTGCAAAATCTTTAGATACTCAAAACAAAGGTAATAGATTGTG</canonical_amplicon>
		<polymorphic_amplicon>TTCCTCGCTGTATTGAAAAAAAAAAAGTTTTCTTTGTTGTAAAAATGCTTTTTTCTGAAAAAAACTTGAATATTTCAAAGGTAATGCAAGCGCGCTCTGCTGCAAAAAAGTTTCAATCCGGGACAGTTCGACACCGCACAATTCGAATCTGTAACGGTTTGATTCTGTACTTGTTCTATTCTGGACGTGTTCRATAAAGGGACAGTTCTAATTCGAACGAGTTCGTTTTCGGGACAGTTCGATTTCGGGAAAGTTCGAATTCATCGTACCCTCGTTTTTTCTAGACCTAATCTTTGCAAAATCTTTAGATACTCAAAACAAAGGTAATAGATTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29131</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>149339</contig_pos>
        <strand></strand>
        <context>gacgtgttcr[A/G]waaagggaca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAATCTGTAACGGTTTGATTCTGTACTTGTTCTATTCTGGACGTGTTCA</left_flank>
        <right_flank>TAAAGGGACAGTTCTAATTCGAACGAGTTCGTTTTCGGGACAGTTCGATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAGAACAAGTACAGAATCAAACCGTTACAGATTCGAATTGTGCGGTGTCGAACTGGGCCGGATTGGAACTTTTTTTGCAACAGAGCGCGCTTGCATAAATTTTATTTCTCAATTATTTTTGTTAACAAATTTTTCTTTTTTTCTCCAGAAAAACTTCTTTTAAAGAATTTTGGATGTTTCGCGGGTTTATTTTTTTGTTTTGAGAATAAACAATTCTTACAGAAATGGCCCCCCGTAAAAATAAGCCGATTATCCAAGTTTTTCTTTTTTTTTTACATATATTTTCTACTTCTTAAATTGTTTTTTCCTCGCTGTATTGAAAAAAAAAAAGTTTTCTTTGTTGTAAAAATGCTTTTTTCTGAAAAAAACTTGAATATTTCAAAGGTAATGCAAGCGCGCTCTGCTGCAAAAAAGTTTCAATCCGGGACAGTTCGACACCGCACAATTCGAATCTGTAACGGTTTGATTCTGTACTTGTTCTATTCTGGACGTGTTCAATAAAGGGACAGTTCTAATTCGAACGAGTTCGTTTTCGGGACAGTTCGATTTCGGGAAAGTTCGAATTCATCGTACCCTCGTTTTTTCTAGACCTAATCTTTGCAAAATCTTTAGATACTCAAAACAAAGGTAATAGATTGTGTGGCATCAGTTCAAACGTACCGTAAATACTCTAATTGTATGTAGCATGCCTCTAAGTTCAAGCTTATATATCTCATTTTCTGTGAAAATTAGTCAAAAGTGTTTAATTAACAAAATGTTCATTATAAGATGAAACTGTATTGTCATCTAATAAATTTCTTATATCTTTCACAAAAACAGAGATACATTGGATTGAGATTAGGGCTCATTTGATAGGAGTGTTTACGGTGGGTTAACATTTTTGACAAGGTAGAAAAAGTAATTAACAAGATCTATCTTCTTTTTCGAATTTTGTGCCGCGATTTTGAATTTTTTTTTTCTTCTAGAATGAAAATACCACCCGTTAAAAACCAGATTCA</canonical>
            <polymorphic>AATAGAACAAGTACAGAATCAAACCGTTACAGATTCGAATTGTGCGGTGTCGAACTGGGCCGGATTGGAACTTTTTTTGCAACAGAGCGCGCTTGCATAAATTTTATTTCTCAATTATTTTTGTTAACAAATTTTTCTTTTTTTCTCCAGAAAAACTTCTTTTAAAGAATTTTGGATGTTTCGCGGGTTTATTTTTTTGTTTTGAGAATAAACAATTCTTACAGAAATGGCCCCCCGTAAAAATAAGCCGATTATCCAAGTTTTTCTTTTTTTTTTACATATATTTTCTACTTCTTAAATTGTTTTTTCCTCGCTGTATTGAAAAAAAAAAAGTTTTCTTTGTTGTAAAAATGCTTTTTTCTGAAAAAAACTTGAATATTTCAAAGGTAATGCAAGCGCGCTCTGCTGCAAAAAAGTTTCAATCCGGGACAGTTCGACACCGCACAATTCGAATCTGTAACGGTTTGATTCTGTACTTGTTCTATTCTGGACGTGTTCARTAAAGGGACAGTTCTAATTCGAACGAGTTCGTTTTCGGGACAGTTCGATTTCGGGAAAGTTCGAATTCATCGTACCCTCGTTTTTTCTAGACCTAATCTTTGCAAAATCTTTAGATACTCAAAACAAAGGTAATAGATTGTGTGGCATCAGTTCAAACGTACCGTAAATACTCTAATTGTATGTAGCATGCCTCTAAGTTCAAGCTTATATATCTCATTTTCTGTGAAAATTAGTCAAAAGTGTTTAATTAACAAAATGTTCATTATAAGATGAAACTGTATTGTCATCTAATAAATTTCTTATATCTTTCACAAAAACAGAGATACATTGGATTGAGATTAGGGCTCATTTGATAGGAGTGTTTACGGTGGGTTAACATTTTTGACAAGGTAGAAAAAGTAATTAACAAGATCTATCTTCTTTTTCGAATTTTGTGCCGCGATTTTGAATTTTTTTTTTCTTCTAGAATGAAAATACCACCCGTTAAAAACCAGATTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCTCGCTGTATTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CACAATCTATTACCTTTGTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>336</pcr_amplicon_size>
		<canonical_amplicon>TTCCTCGCTGTATTGAAAAAAAAAAAGTTTTCTTTGTTGTAAAAATGCTTTTTTCTGAAAAAAACTTGAATATTTCAAAGGTAATGCAAGCGCGCTCTGCTGCAAAAAAGTTTCAATCCGGGACAGTTCGACACCGCACAATTCGAATCTGTAACGGTTTGATTCTGTACTTGTTCTATTCTGGACGTGTTCAATAAAGGGACAGTTCTAATTCGAACGAGTTCGTTTTCGGGACAGTTCGATTTCGGGAAAGTTCGAATTCATCGTACCCTCGTTTTTTCTAGACCTAATCTTTGCAAAATCTTTAGATACTCAAAACAAAGGTAATAGATTGTG</canonical_amplicon>
		<polymorphic_amplicon>TTCCTCGCTGTATTGAAAAAAAAAAAGTTTTCTTTGTTGTAAAAATGCTTTTTTCTGAAAAAAACTTGAATATTTCAAAGGTAATGCAAGCGCGCTCTGCTGCAAAAAAGTTTCAATCCGGGACAGTTCGACACCGCACAATTCGAATCTGTAACGGTTTGATTCTGTACTTGTTCTATTCTGGACGTGTTCARTAAAGGGACAGTTCTAATTCGAACGAGTTCGTTTTCGGGACAGTTCGATTTCGGGAAAGTTCGAATTCATCGTACCCTCGTTTTTTCTAGACCTAATCTTTGCAAAATCTTTAGATACTCAAAACAAAGGTAATAGATTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29132</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>149340</contig_pos>
        <strand></strand>
        <context>acgtgttcrr[T/A]aaagggacag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GAATCTGTAACGGTTTGATTCTGTACTTGTTCTATTCTGGACGTGTTCAA</left_flank>
        <right_flank>AAAGGGACAGTTCTAATTCGAACGAGTTCGTTTTCGGGACAGTTCGATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGAACAAGTACAGAATCAAACCGTTACAGATTCGAATTGTGCGGTGTCGAACTGGGCCGGATTGGAACTTTTTTTGCAACAGAGCGCGCTTGCATAAATTTTATTTCTCAATTATTTTTGTTAACAAATTTTTCTTTTTTTCTCCAGAAAAACTTCTTTTAAAGAATTTTGGATGTTTCGCGGGTTTATTTTTTTGTTTTGAGAATAAACAATTCTTACAGAAATGGCCCCCCGTAAAAATAAGCCGATTATCCAAGTTTTTCTTTTTTTTTTACATATATTTTCTACTTCTTAAATTGTTTTTTCCTCGCTGTATTGAAAAAAAAAAAGTTTTCTTTGTTGTAAAAATGCTTTTTTCTGAAAAAAACTTGAATATTTCAAAGGTAATGCAAGCGCGCTCTGCTGCAAAAAAGTTTCAATCCGGGACAGTTCGACACCGCACAATTCGAATCTGTAACGGTTTGATTCTGTACTTGTTCTATTCTGGACGTGTTCAATAAAGGGACAGTTCTAATTCGAACGAGTTCGTTTTCGGGACAGTTCGATTTCGGGAAAGTTCGAATTCATCGTACCCTCGTTTTTTCTAGACCTAATCTTTGCAAAATCTTTAGATACTCAAAACAAAGGTAATAGATTGTGTGGCATCAGTTCAAACGTACCGTAAATACTCTAATTGTATGTAGCATGCCTCTAAGTTCAAGCTTATATATCTCATTTTCTGTGAAAATTAGTCAAAAGTGTTTAATTAACAAAATGTTCATTATAAGATGAAACTGTATTGTCATCTAATAAATTTCTTATATCTTTCACAAAAACAGAGATACATTGGATTGAGATTAGGGCTCATTTGATAGGAGTGTTTACGGTGGGTTAACATTTTTGACAAGGTAGAAAAAGTAATTAACAAGATCTATCTTCTTTTTCGAATTTTGTGCCGCGATTTTGAATTTTTTTTTTCTTCTAGAATGAAAATACCACCCGTTAAAAACCAGATTCAA</canonical>
            <polymorphic>ATAGAACAAGTACAGAATCAAACCGTTACAGATTCGAATTGTGCGGTGTCGAACTGGGCCGGATTGGAACTTTTTTTGCAACAGAGCGCGCTTGCATAAATTTTATTTCTCAATTATTTTTGTTAACAAATTTTTCTTTTTTTCTCCAGAAAAACTTCTTTTAAAGAATTTTGGATGTTTCGCGGGTTTATTTTTTTGTTTTGAGAATAAACAATTCTTACAGAAATGGCCCCCCGTAAAAATAAGCCGATTATCCAAGTTTTTCTTTTTTTTTTACATATATTTTCTACTTCTTAAATTGTTTTTTCCTCGCTGTATTGAAAAAAAAAAAGTTTTCTTTGTTGTAAAAATGCTTTTTTCTGAAAAAAACTTGAATATTTCAAAGGTAATGCAAGCGCGCTCTGCTGCAAAAAAGTTTCAATCCGGGACAGTTCGACACCGCACAATTCGAATCTGTAACGGTTTGATTCTGTACTTGTTCTATTCTGGACGTGTTCAAWAAAGGGACAGTTCTAATTCGAACGAGTTCGTTTTCGGGACAGTTCGATTTCGGGAAAGTTCGAATTCATCGTACCCTCGTTTTTTCTAGACCTAATCTTTGCAAAATCTTTAGATACTCAAAACAAAGGTAATAGATTGTGTGGCATCAGTTCAAACGTACCGTAAATACTCTAATTGTATGTAGCATGCCTCTAAGTTCAAGCTTATATATCTCATTTTCTGTGAAAATTAGTCAAAAGTGTTTAATTAACAAAATGTTCATTATAAGATGAAACTGTATTGTCATCTAATAAATTTCTTATATCTTTCACAAAAACAGAGATACATTGGATTGAGATTAGGGCTCATTTGATAGGAGTGTTTACGGTGGGTTAACATTTTTGACAAGGTAGAAAAAGTAATTAACAAGATCTATCTTCTTTTTCGAATTTTGTGCCGCGATTTTGAATTTTTTTTTTCTTCTAGAATGAAAATACCACCCGTTAAAAACCAGATTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCTCGCTGTATTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CACAATCTATTACCTTTGTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>336</pcr_amplicon_size>
		<canonical_amplicon>TTCCTCGCTGTATTGAAAAAAAAAAAGTTTTCTTTGTTGTAAAAATGCTTTTTTCTGAAAAAAACTTGAATATTTCAAAGGTAATGCAAGCGCGCTCTGCTGCAAAAAAGTTTCAATCCGGGACAGTTCGACACCGCACAATTCGAATCTGTAACGGTTTGATTCTGTACTTGTTCTATTCTGGACGTGTTCAATAAAGGGACAGTTCTAATTCGAACGAGTTCGTTTTCGGGACAGTTCGATTTCGGGAAAGTTCGAATTCATCGTACCCTCGTTTTTTCTAGACCTAATCTTTGCAAAATCTTTAGATACTCAAAACAAAGGTAATAGATTGTG</canonical_amplicon>
		<polymorphic_amplicon>TTCCTCGCTGTATTGAAAAAAAAAAAGTTTTCTTTGTTGTAAAAATGCTTTTTTCTGAAAAAAACTTGAATATTTCAAAGGTAATGCAAGCGCGCTCTGCTGCAAAAAAGTTTCAATCCGGGACAGTTCGACACCGCACAATTCGAATCTGTAACGGTTTGATTCTGTACTTGTTCTATTCTGGACGTGTTCAAWAAAGGGACAGTTCTAATTCGAACGAGTTCGTTTTCGGGACAGTTCGATTTCGGGAAAGTTCGAATTCATCGTACCCTCGTTTTTTCTAGACCTAATCTTTGCAAAATCTTTAGATACTCAAAACAAAGGTAATAGATTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29133</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>149437</contig_pos>
        <strand>+</strand>
        <context>TAGACCTAAT[C/T]TTTGCAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTCGGGAAAGTTCGAATTCATCGTACCCTCGTTTTTTCTAGACCTAAT</left_flank>
        <right_flank>TTTGCAAAATCTTTAGATACTCAAAACAAAGGTAATAGATTGTGTGGCAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTTATTTCTCAATTATTTTTGTTAACAAATTTTTCTTTTTTTCTCCAGAAAAACTTCTTTTAAAGAATTTTGGATGTTTCGCGGGTTTATTTTTTTGTTTTGAGAATAAACAATTCTTACAGAAATGGCCCCCCGTAAAAATAAGCCGATTATCCAAGTTTTTCTTTTTTTTTTACATATATTTTCTACTTCTTAAATTGTTTTTTCCTCGCTGTATTGAAAAAAAAAAAGTTTTCTTTGTTGTAAAAATGCTTTTTTCTGAAAAAAACTTGAATATTTCAAAGGTAATGCAAGCGCGCTCTGCTGCAAAAAAGTTTCAATCCGGGACAGTTCGACACCGCACAATTCGAATCTGTAACGGTTTGATTCTGTACTTGTTCTATTCTGGACGTGTTCAATAAAGGGACAGTTCTAATTCGAACGAGTTCGTTTTCGGGACAGTTCGATTTCGGGAAAGTTCGAATTCATCGTACCCTCGTTTTTTCTAGACCTAATCTTTGCAAAATCTTTAGATACTCAAAACAAAGGTAATAGATTGTGTGGCATCAGTTCAAACGTACCGTAAATACTCTAATTGTATGTAGCATGCCTCTAAGTTCAAGCTTATATATCTCATTTTCTGTGAAAATTAGTCAAAAGTGTTTAATTAACAAAATGTTCATTATAAGATGAAACTGTATTGTCATCTAATAAATTTCTTATATCTTTCACAAAAACAGAGATACATTGGATTGAGATTAGGGCTCATTTGATAGGAGTGTTTACGGTGGGTTAACATTTTTGACAAGGTAGAAAAAGTAATTAACAAGATCTATCTTCTTTTTCGAATTTTGTGCCGCGATTTTGAATTTTTTTTTTCTTCTAGAATGAAAATACCACCCGTTAAAAACCAGATTCAAATAACTTCCTATAACTGAAATACACGGTTCTAAGTCCCCACGACTGACGGAAAGATTTTCAGAACAAACGTCTCAATAAAGTGATGGGTATGGTCGA</canonical>
            <polymorphic>AAATTTTATTTCTCAATTATTTTTGTTAACAAATTTTTCTTTTTTTCTCCAGAAAAACTTCTTTTAAAGAATTTTGGATGTTTCGCGGGTTTATTTTTTTGTTTTGAGAATAAACAATTCTTACAGAAATGGCCCCCCGTAAAAATAAGCCGATTATCCAAGTTTTTCTTTTTTTTTTACATATATTTTCTACTTCTTAAATTGTTTTTTCCTCGCTGTATTGAAAAAAAAAAAGTTTTCTTTGTTGTAAAAATGCTTTTTTCTGAAAAAAACTTGAATATTTCAAAGGTAATGCAAGCGCGCTCTGCTGCAAAAAAGTTTCAATCCGGGACAGTTCGACACCGCACAATTCGAATCTGTAACGGTTTGATTCTGTACTTGTTCTATTCTGGACGTGTTCAATAAAGGGACAGTTCTAATTCGAACGAGTTCGTTTTCGGGACAGTTCGATTTCGGGAAAGTTCGAATTCATCGTACCCTCGTTTTTTCTAGACCTAATYTTTGCAAAATCTTTAGATACTCAAAACAAAGGTAATAGATTGTGTGGCATCAGTTCAAACGTACCGTAAATACTCTAATTGTATGTAGCATGCCTCTAAGTTCAAGCTTATATATCTCATTTTCTGTGAAAATTAGTCAAAAGTGTTTAATTAACAAAATGTTCATTATAAGATGAAACTGTATTGTCATCTAATAAATTTCTTATATCTTTCACAAAAACAGAGATACATTGGATTGAGATTAGGGCTCATTTGATAGGAGTGTTTACGGTGGGTTAACATTTTTGACAAGGTAGAAAAAGTAATTAACAAGATCTATCTTCTTTTTCGAATTTTGTGCCGCGATTTTGAATTTTTTTTTTCTTCTAGAATGAAAATACCACCCGTTAAAAACCAGATTCAAATAACTTCCTATAACTGAAATACACGGTTCTAAGTCCCCACGACTGACGGAAAGATTTTCAGAACAAACGTCTCAATAAAGTGATGGGTATGGTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCTCGCTGTATTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACTGATGCCACACAATCTATTAC</pcr_primer_p2>
		<pcr_amplicon_size>346</pcr_amplicon_size>
		<canonical_amplicon>TTCCTCGCTGTATTGAAAAAAAAAAAGTTTTCTTTGTTGTAAAAATGCTTTTTTCTGAAAAAAACTTGAATATTTCAAAGGTAATGCAAGCGCGCTCTGCTGCAAAAAAGTTTCAATCCGGGACAGTTCGACACCGCACAATTCGAATCTGTAACGGTTTGATTCTGTACTTGTTCTATTCTGGACGTGTTCAATAAAGGGACAGTTCTAATTCGAACGAGTTCGTTTTCGGGACAGTTCGATTTCGGGAAAGTTCGAATTCATCGTACCCTCGTTTTTTCTAGACCTAATCTTTGCAAAATCTTTAGATACTCAAAACAAAGGTAATAGATTGTGTGGCATCAGT</canonical_amplicon>
		<polymorphic_amplicon>TTCCTCGCTGTATTGAAAAAAAAAAAGTTTTCTTTGTTGTAAAAATGCTTTTTTCTGAAAAAAACTTGAATATTTCAAAGGTAATGCAAGCGCGCTCTGCTGCAAAAAAGTTTCAATCCGGGACAGTTCGACACCGCACAATTCGAATCTGTAACGGTTTGATTCTGTACTTGTTCTATTCTGGACGTGTTCAATAAAGGGACAGTTCTAATTCGAACGAGTTCGTTTTCGGGACAGTTCGATTTCGGGAAAGTTCGAATTCATCGTACCCTCGTTTTTTCTAGACCTAATYTTTGCAAAATCTTTAGATACTCAAAACAAAGGTAATAGATTGTGTGGCATCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29134</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>149766</contig_pos>
        <strand>+</strand>
        <context>TCTTCTTTTT[A/C]GAAWTTTGTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACATTTTTGACAAGGTAGAAAAAGTAATTAACAAGATCTATCTTCTTTTT</left_flank>
        <right_flank>GAATTTTGTGCCGCGATTTTGAATTTTTTTTTTCTTCTAGAATGAAAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACAGTTCGACACCGCACAATTCGAATCTGTAACGGTTTGATTCTGTACTTGTTCTATTCTGGACGTGTTCAATAAAGGGACAGTTCTAATTCGAACGAGTTCGTTTTCGGGACAGTTCGATTTCGGGAAAGTTCGAATTCATCGTACCCTCGTTTTTTCTAGACCTAATCTTTGCAAAATCTTTAGATACTCAAAACAAAGGTAATAGATTGTGTGGCATCAGTTCAAACGTACCGTAAATACTCTAATTGTATGTAGCATGCCTCTAAGTTCAAGCTTATATATCTCATTTTCTGTGAAAATTAGTCAAAAGTGTTTAATTAACAAAATGTTCATTATAAGATGAAACTGTATTGTCATCTAATAAATTTCTTATATCTTTCACAAAAACAGAGATACATTGGATTGAGATTAGGGCTCATTTGATAGGAGTGTTTACGGTGGGTTAACATTTTTGACAAGGTAGAAAAAGTAATTAACAAGATCTATCTTCTTTTTCGAATTTTGTGCCGCGATTTTGAATTTTTTTTTTCTTCTAGAATGAAAATACCACCCGTTAAAAACCAGATTCAAATAACTTCCTATAACTGAAATACACGGTTCTAAGTCCCCACGACTGACGGAAAGATTTTCAGAACAAACGTCTCAATAAAGTGATGGGTATGGTCGAATTGCATTCGAAAAACCCAGATAACGGTGTCATCCGGGTGGATCTCAAGATTCTCCTTCAGAAACTGTTTGGAAAGTTGAAGTAAGTTACATTTAACAAGTTCATGATTTCGAAATTTTAAACAAAAATAGAACTGAGACCAATACAGTCCAAATTTTGGAGAATACAATTCTTGAAAATTCGAATAACACAAAATATTCCAAAGTTGGAACCCCGGATTATTCCGTTTTTTTTTGCCATTAATCGAAATCTAGAAAGATTCCAGATCGTTTGCAAATTTCAATAGTCTGATTTTAAAATTTTAAAAATCTTCCGAATTTCAAAATTTT</canonical>
            <polymorphic>GACAGTTCGACACCGCACAATTCGAATCTGTAACGGTTTGATTCTGTACTTGTTCTATTCTGGACGTGTTCAATAAAGGGACAGTTCTAATTCGAACGAGTTCGTTTTCGGGACAGTTCGATTTCGGGAAAGTTCGAATTCATCGTACCCTCGTTTTTTCTAGACCTAATCTTTGCAAAATCTTTAGATACTCAAAACAAAGGTAATAGATTGTGTGGCATCAGTTCAAACGTACCGTAAATACTCTAATTGTATGTAGCATGCCTCTAAGTTCAAGCTTATATATCTCATTTTCTGTGAAAATTAGTCAAAAGTGTTTAATTAACAAAATGTTCATTATAAGATGAAACTGTATTGTCATCTAATAAATTTCTTATATCTTTCACAAAAACAGAGATACATTGGATTGAGATTAGGGCTCATTTGATAGGAGTGTTTACGGTGGGTTAACATTTTTGACAAGGTAGAAAAAGTAATTAACAAGATCTATCTTCTTTTTMGAATTTTGTGCCGCGATTTTGAATTTTTTTTTTCTTCTAGAATGAAAATACCACCCGTTAAAAACCAGATTCAAATAACTTCCTATAACTGAAATACACGGTTCTAAGTCCCCACGACTGACGGAAAGATTTTCAGAACAAACGTCTCAATAAAGTGATGGGTATGGTCGAATTGCATTCGAAAAACCCAGATAACGGTGTCATCCGGGTGGATCTCAAGATTCTCCTTCAGAAACTGTTTGGAAAGTTGAAGTAAGTTACATTTAACAAGTTCATGATTTCGAAATTTTAAACAAAAATAGAACTGAGACCAATACAGTCCAAATTTTGGAGAATACAATTCTTGAAAATTCGAATAACACAAAATATTCCAAAGTTGGAACCCCGGATTATTCCGTTTTTTTTTGCCATTAATCGAAATCTAGAAAGATTCCAGATCGTTTGCAAATTTCAATAGTCTGATTTTAAAATTTTAAAAATCTTCCGAATTTCAAAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>365 180 148 102 71 70 42 22</canonical_bands>
                <polymorphic_bands>545 148 102 71 70 42 22</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>365 169 102 84 71 70 63 26 16 15 11 8</canonical_bands>
                <polymorphic_bands>534 102 84 71 70 63 26 16 15 11 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTCATTTGATAGGAGTGTTTAC</pcr_primer_p1>
		<pcr_primer_p2>CATACCCATCACTTTATTGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTCATTTGATAGGAGTGTTTACGGTGGGTTAACATTTTTGACAAGGTAGAAAAAGTAATTAACAAGATCTATCTTCTTTTTCGAATTTTGTGCCGCGATTTTGAATTTTTTTTTTCTTCTAGAATGAAAATACCACCCGTTAAAAACCAGATTCAAATAACTTCCTATAACTGAAATACACGGTTCTAAGTCCCCACGACTGACGGAAAGATTTTCAGAACAAACGTCTCAATAAAGTGATGGGTATG</canonical_amplicon>
		<polymorphic_amplicon>GCTCATTTGATAGGAGTGTTTACGGTGGGTTAACATTTTTGACAAGGTAGAAAAAGTAATTAACAAGATCTATCTTCTTTTTMGAATTTTGTGCCGCGATTTTGAATTTTTTTTTTCTTCTAGAATGAAAATACCACCCGTTAAAAACCAGATTCAAATAACTTCCTATAACTGAAATACACGGTTCTAAGTCCCCACGACTGACGGAAAGATTTTCAGAACAAACGTCTCAATAAAGTGATGGGTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29135</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>149770</contig_pos>
        <strand>+</strand>
        <context>CTTTTTMGAA[A/T]TTTGTGCCGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTGACAAGGTAGAAAAAGTAATTAACAAGATCTATCTTCTTTTTCGAA</left_flank>
        <right_flank>TTTGTGCCGCGATTTTGAATTTTTTTTTTCTTCTAGAATGAAAATACCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCGACACCGCACAATTCGAATCTGTAACGGTTTGATTCTGTACTTGTTCTATTCTGGACGTGTTCAATAAAGGGACAGTTCTAATTCGAACGAGTTCGTTTTCGGGACAGTTCGATTTCGGGAAAGTTCGAATTCATCGTACCCTCGTTTTTTCTAGACCTAATCTTTGCAAAATCTTTAGATACTCAAAACAAAGGTAATAGATTGTGTGGCATCAGTTCAAACGTACCGTAAATACTCTAATTGTATGTAGCATGCCTCTAAGTTCAAGCTTATATATCTCATTTTCTGTGAAAATTAGTCAAAAGTGTTTAATTAACAAAATGTTCATTATAAGATGAAACTGTATTGTCATCTAATAAATTTCTTATATCTTTCACAAAAACAGAGATACATTGGATTGAGATTAGGGCTCATTTGATAGGAGTGTTTACGGTGGGTTAACATTTTTGACAAGGTAGAAAAAGTAATTAACAAGATCTATCTTCTTTTTCGAATTTTGTGCCGCGATTTTGAATTTTTTTTTTCTTCTAGAATGAAAATACCACCCGTTAAAAACCAGATTCAAATAACTTCCTATAACTGAAATACACGGTTCTAAGTCCCCACGACTGACGGAAAGATTTTCAGAACAAACGTCTCAATAAAGTGATGGGTATGGTCGAATTGCATTCGAAAAACCCAGATAACGGTGTCATCCGGGTGGATCTCAAGATTCTCCTTCAGAAACTGTTTGGAAAGTTGAAGTAAGTTACATTTAACAAGTTCATGATTTCGAAATTTTAAACAAAAATAGAACTGAGACCAATACAGTCCAAATTTTGGAGAATACAATTCTTGAAAATTCGAATAACACAAAATATTCCAAAGTTGGAACCCCGGATTATTCCGTTTTTTTTTGCCATTAATCGAAATCTAGAAAGATTCCAGATCGTTTGCAAATTTCAATAGTCTGATTTTAAAATTTTAAAAATCTTCCGAATTTCAAAATTTTTTTG</canonical>
            <polymorphic>GTTCGACACCGCACAATTCGAATCTGTAACGGTTTGATTCTGTACTTGTTCTATTCTGGACGTGTTCAATAAAGGGACAGTTCTAATTCGAACGAGTTCGTTTTCGGGACAGTTCGATTTCGGGAAAGTTCGAATTCATCGTACCCTCGTTTTTTCTAGACCTAATCTTTGCAAAATCTTTAGATACTCAAAACAAAGGTAATAGATTGTGTGGCATCAGTTCAAACGTACCGTAAATACTCTAATTGTATGTAGCATGCCTCTAAGTTCAAGCTTATATATCTCATTTTCTGTGAAAATTAGTCAAAAGTGTTTAATTAACAAAATGTTCATTATAAGATGAAACTGTATTGTCATCTAATAAATTTCTTATATCTTTCACAAAAACAGAGATACATTGGATTGAGATTAGGGCTCATTTGATAGGAGTGTTTACGGTGGGTTAACATTTTTGACAAGGTAGAAAAAGTAATTAACAAGATCTATCTTCTTTTTCGAAWTTTGTGCCGCGATTTTGAATTTTTTTTTTCTTCTAGAATGAAAATACCACCCGTTAAAAACCAGATTCAAATAACTTCCTATAACTGAAATACACGGTTCTAAGTCCCCACGACTGACGGAAAGATTTTCAGAACAAACGTCTCAATAAAGTGATGGGTATGGTCGAATTGCATTCGAAAAACCCAGATAACGGTGTCATCCGGGTGGATCTCAAGATTCTCCTTCAGAAACTGTTTGGAAAGTTGAAGTAAGTTACATTTAACAAGTTCATGATTTCGAAATTTTAAACAAAAATAGAACTGAGACCAATACAGTCCAAATTTTGGAGAATACAATTCTTGAAAATTCGAATAACACAAAATATTCCAAAGTTGGAACCCCGGATTATTCCGTTTTTTTTTGCCATTAATCGAAATCTAGAAAGATTCCAGATCGTTTGCAAATTTCAATAGTCTGATTTTAAAATTTTAAAAATCTTCCGAATTTCAAAATTTTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>263 231 134 132 98 39 25 22 20 18 10 8</canonical_bands>
                <polymorphic_bands>263 231 154 132 98 39 25 22 18 10 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>149 114 111 107 98 70 54 48 48 39 27 22 20 18 18 15 14 10 10 8</canonical_bands>
                <polymorphic_bands>149 114 111 107 98 70 54 48 48 47 39 22 18 18 15 14 10 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTCATTTGATAGGAGTGTTTAC</pcr_primer_p1>
		<pcr_primer_p2>CATACCCATCACTTTATTGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTCATTTGATAGGAGTGTTTACGGTGGGTTAACATTTTTGACAAGGTAGAAAAAGTAATTAACAAGATCTATCTTCTTTTTCGAATTTTGTGCCGCGATTTTGAATTTTTTTTTTCTTCTAGAATGAAAATACCACCCGTTAAAAACCAGATTCAAATAACTTCCTATAACTGAAATACACGGTTCTAAGTCCCCACGACTGACGGAAAGATTTTCAGAACAAACGTCTCAATAAAGTGATGGGTATG</canonical_amplicon>
		<polymorphic_amplicon>GCTCATTTGATAGGAGTGTTTACGGTGGGTTAACATTTTTGACAAGGTAGAAAAAGTAATTAACAAGATCTATCTTCTTTTTCGAAWTTTGTGCCGCGATTTTGAATTTTTTTTTTCTTCTAGAATGAAAATACCACCCGTTAAAAACCAGATTCAAATAACTTCCTATAACTGAAATACACGGTTCTAAGTCCCCACGACTGACGGAAAGATTTTCAGAACAAACGTCTCAATAAAGTGATGGGTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29136</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>150262</contig_pos>
        <strand></strand>
        <context>gaatttcaaa[A/T]ttttttkgga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATTTCAATAGTCTGATTTTAAAATTTTAAAAATCTTCCGAATTTCAAA</left_flank>
        <right_flank>TTTTTTTGGAAAATCGAAATTTTCGAACATTCGGAAAATCGAAATTTTCG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGAATTTTGTGCCGCGATTTTGAATTTTTTTTTTCTTCTAGAATGAAAATACCACCCGTTAAAAACCAGATTCAAATAACTTCCTATAACTGAAATACACGGTTCTAAGTCCCCACGACTGACGGAAAGATTTTCAGAACAAACGTCTCAATAAAGTGATGGGTATGGTCGAATTGCATTCGAAAAACCCAGATAACGGTGTCATCCGGGTGGATCTCAAGATTCTCCTTCAGAAACTGTTTGGAAAGTTGAAGTAAGTTACATTTAACAAGTTCATGATTTCGAAATTTTAAACAAAAATAGAACTGAGACCAATACAGTCCAAATTTTGGAGAATACAATTCTTGAAAATTCGAATAACACAAAATATTCCAAAGTTGGAACCCCGGATTATTCCGTTTTTTTTTGCCATTAATCGAAATCTAGAAAGATTCCAGATCGTTTGCAAATTTCAATAGTCTGATTTTAAAATTTTAAAAATCTTCCGAATTTCAAAATTTTTTTGGAAAATCGAAATTTTCGAACATTCGGAAAATCGAAATTTTCGAACATTCGGAAAATTTCAGACATGAAATTTCGGAATTTCCTGTTGTTTTTTTTTCAAAAACTAGAATTTTGAAATTAGAGAAGCCCCTAAATTTTTTCGGAAAATCGGCATTTCGGTATTTTTCAAACTTTCAATGATCTAAAATAAAATTAAGAGTTTTAGAATATTTCAATTTTTGGAAAAGTAGATTTTCAGAACTTTAGAAAAATTCAAATTTTTGAGCAAAATGGAACAAAATTTGAAACAATTGCAAGATTTCAACTATCGAATTTTGAGAATTTTATAAATTTCTGAAATATGGAATTTTCAGATGTCCGTATTTTTGAATACCAGAACTTCAGAAGTTTAAAATGTTCCGACTTTTCCAGAATCGGGAATTCAGAATTGCGAAATTTTCTGACAATTCAAAAATCGGAATTTTAAATTTTTAGAATATTTCAAACTTTCGAG</canonical>
            <polymorphic>TTTCGAATTTTGTGCCGCGATTTTGAATTTTTTTTTTCTTCTAGAATGAAAATACCACCCGTTAAAAACCAGATTCAAATAACTTCCTATAACTGAAATACACGGTTCTAAGTCCCCACGACTGACGGAAAGATTTTCAGAACAAACGTCTCAATAAAGTGATGGGTATGGTCGAATTGCATTCGAAAAACCCAGATAACGGTGTCATCCGGGTGGATCTCAAGATTCTCCTTCAGAAACTGTTTGGAAAGTTGAAGTAAGTTACATTTAACAAGTTCATGATTTCGAAATTTTAAACAAAAATAGAACTGAGACCAATACAGTCCAAATTTTGGAGAATACAATTCTTGAAAATTCGAATAACACAAAATATTCCAAAGTTGGAACCCCGGATTATTCCGTTTTTTTTTGCCATTAATCGAAATCTAGAAAGATTCCAGATCGTTTGCAAATTTCAATAGTCTGATTTTAAAATTTTAAAAATCTTCCGAATTTCAAAWTTTTTTTGGAAAATCGAAATTTTCGAACATTCGGAAAATCGAAATTTTCGAACATTCGGAAAATTTCAGACATGAAATTTCGGAATTTCCTGTTGTTTTTTTTTCAAAAACTAGAATTTTGAAATTAGAGAAGCCCCTAAATTTTTTCGGAAAATCGGCATTTCGGTATTTTTCAAACTTTCAATGATCTAAAATAAAATTAAGAGTTTTAGAATATTTCAATTTTTGGAAAAGTAGATTTTCAGAACTTTAGAAAAATTCAAATTTTTGAGCAAAATGGAACAAAATTTGAAACAATTGCAAGATTTCAACTATCGAATTTTGAGAATTTTATAAATTTCTGAAATATGGAATTTTCAGATGTCCGTATTTTTGAATACCAGAACTTCAGAAGTTTAAAATGTTCCGACTTTTCCAGAATCGGGAATTCAGAATTGCGAAATTTTCTGACAATTCAAAAATCGGAATTTTAAATTTTTAGAATATTTCAAACTTTCGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>263 117 98 74 39 32 31 28 25 25 25 25 23 22 20 19 19 18 16 15 14 9 9 8 8 7 6 5</canonical_bands>
                <polymorphic_bands>263 117 98 74 39 32 31 28 27 25 25 25 25 23 22 20 19 18 16 15 14 9 9 8 7 6 5</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>149 114 98 74 58 39 36 31 28 25 23 23 22 22 20 19 19 18 17 16 15 14 14 11 10 10 9 9 8 8 8 8 7 7 6 5</canonical_bands>
                <polymorphic_bands>149 114 98 74 58 39 36 31 28 27 25 23 23 22 22 20 19 18 17 16 15 14 14 11 10 10 9 9 8 8 8 7 7 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGAAAGATTCCAGATCGTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTGAAAAATACCGAAATG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TAGAAAGATTCCAGATCGTTTGCAAATTTCAATAGTCTGATTTTAAAATTTTAAAAATCTTCCGAATTTCAAAATTTTTTTGGAAAATCGAAATTTTCGAACATTCGGAAAATCGAAATTTTCGAACATTCGGAAAATTTCAGACATGAAATTTCGGAATTTCCTGTTGTTTTTTTTTCAAAAACTAGAATTTTGAAATTAGAGAAGCCCCTAAATTTTTTCGGAAAATCGGCATTTCGGTATTTTTCAAACTT</canonical_amplicon>
		<polymorphic_amplicon>TAGAAAGATTCCAGATCGTTTGCAAATTTCAATAGTCTGATTTTAAAATTTTAAAAATCTTCCGAATTTCAAAWTTTTTTTGGAAAATCGAAATTTTCGAACATTCGGAAAATCGAAATTTTCGAACATTCGGAAAATTTCAGACATGAAATTTCGGAATTTCCTGTTGTTTTTTTTTCAAAAACTAGAATTTTGAAATTAGAGAAGCCCCTAAATTTTTTCGGAAAATCGGCATTTCGGTATTTTTCAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29137</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>150269</contig_pos>
        <strand></strand>
        <context>aaawtttttt[T/G]ggaaaatcga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AATAGTCTGATTTTAAAATTTTAAAAATCTTCCGAATTTCAAAATTTTTT</left_flank>
        <right_flank>GGAAAATCGAAATTTTCGAACATTCGGAAAATCGAAATTTTCGAACATTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGTGCCGCGATTTTGAATTTTTTTTTTCTTCTAGAATGAAAATACCACCCGTTAAAAACCAGATTCAAATAACTTCCTATAACTGAAATACACGGTTCTAAGTCCCCACGACTGACGGAAAGATTTTCAGAACAAACGTCTCAATAAAGTGATGGGTATGGTCGAATTGCATTCGAAAAACCCAGATAACGGTGTCATCCGGGTGGATCTCAAGATTCTCCTTCAGAAACTGTTTGGAAAGTTGAAGTAAGTTACATTTAACAAGTTCATGATTTCGAAATTTTAAACAAAAATAGAACTGAGACCAATACAGTCCAAATTTTGGAGAATACAATTCTTGAAAATTCGAATAACACAAAATATTCCAAAGTTGGAACCCCGGATTATTCCGTTTTTTTTTGCCATTAATCGAAATCTAGAAAGATTCCAGATCGTTTGCAAATTTCAATAGTCTGATTTTAAAATTTTAAAAATCTTCCGAATTTCAAAATTTTTTTGGAAAATCGAAATTTTCGAACATTCGGAAAATCGAAATTTTCGAACATTCGGAAAATTTCAGACATGAAATTTCGGAATTTCCTGTTGTTTTTTTTTCAAAAACTAGAATTTTGAAATTAGAGAAGCCCCTAAATTTTTTCGGAAAATCGGCATTTCGGTATTTTTCAAACTTTCAATGATCTAAAATAAAATTAAGAGTTTTAGAATATTTCAATTTTTGGAAAAGTAGATTTTCAGAACTTTAGAAAAATTCAAATTTTTGAGCAAAATGGAACAAAATTTGAAACAATTGCAAGATTTCAACTATCGAATTTTGAGAATTTTATAAATTTCTGAAATATGGAATTTTCAGATGTCCGTATTTTTGAATACCAGAACTTCAGAAGTTTAAAATGTTCCGACTTTTCCAGAATCGGGAATTCAGAATTGCGAAATTTTCTGACAATTCAAAAATCGGAATTTTAAATTTTTAGAATATTTCAAACTTTCGAGGAGTAAT</canonical>
            <polymorphic>TTTTGTGCCGCGATTTTGAATTTTTTTTTTCTTCTAGAATGAAAATACCACCCGTTAAAAACCAGATTCAAATAACTTCCTATAACTGAAATACACGGTTCTAAGTCCCCACGACTGACGGAAAGATTTTCAGAACAAACGTCTCAATAAAGTGATGGGTATGGTCGAATTGCATTCGAAAAACCCAGATAACGGTGTCATCCGGGTGGATCTCAAGATTCTCCTTCAGAAACTGTTTGGAAAGTTGAAGTAAGTTACATTTAACAAGTTCATGATTTCGAAATTTTAAACAAAAATAGAACTGAGACCAATACAGTCCAAATTTTGGAGAATACAATTCTTGAAAATTCGAATAACACAAAATATTCCAAAGTTGGAACCCCGGATTATTCCGTTTTTTTTTGCCATTAATCGAAATCTAGAAAGATTCCAGATCGTTTGCAAATTTCAATAGTCTGATTTTAAAATTTTAAAAATCTTCCGAATTTCAAAATTTTTTKGGAAAATCGAAATTTTCGAACATTCGGAAAATCGAAATTTTCGAACATTCGGAAAATTTCAGACATGAAATTTCGGAATTTCCTGTTGTTTTTTTTTCAAAAACTAGAATTTTGAAATTAGAGAAGCCCCTAAATTTTTTCGGAAAATCGGCATTTCGGTATTTTTCAAACTTTCAATGATCTAAAATAAAATTAAGAGTTTTAGAATATTTCAATTTTTGGAAAAGTAGATTTTCAGAACTTTAGAAAAATTCAAATTTTTGAGCAAAATGGAACAAAATTTGAAACAATTGCAAGATTTCAACTATCGAATTTTGAGAATTTTATAAATTTCTGAAATATGGAATTTTCAGATGTCCGTATTTTTGAATACCAGAACTTCAGAAGTTTAAAATGTTCCGACTTTTCCAGAATCGGGAATTCAGAATTGCGAAATTTTCTGACAATTCAAAAATCGGAATTTTAAATTTTTAGAATATTTCAAACTTTCGAGGAGTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAAAGATTCCAGATCGTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTGAAAAATACCGAAATG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TAGAAAGATTCCAGATCGTTTGCAAATTTCAATAGTCTGATTTTAAAATTTTAAAAATCTTCCGAATTTCAAAATTTTTTTGGAAAATCGAAATTTTCGAACATTCGGAAAATCGAAATTTTCGAACATTCGGAAAATTTCAGACATGAAATTTCGGAATTTCCTGTTGTTTTTTTTTCAAAAACTAGAATTTTGAAATTAGAGAAGCCCCTAAATTTTTTCGGAAAATCGGCATTTCGGTATTTTTCAAACTT</canonical_amplicon>
		<polymorphic_amplicon>TAGAAAGATTCCAGATCGTTTGCAAATTTCAATAGTCTGATTTTAAAATTTTAAAAATCTTCCGAATTTCAAAATTTTTTKGGAAAATCGAAATTTTCGAACATTCGGAAAATCGAAATTTTCGAACATTCGGAAAATTTCAGACATGAAATTTCGGAATTTCCTGTTGTTTTTTTTTCAAAAACTAGAATTTTGAAATTAGAGAAGCCCCTAAATTTTTTCGGAAAATCGGCATTTCGGTATTTTTCAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29138</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>177575</contig_pos>
        <strand>+</strand>
        <context>ACTTGTGAAG[C/T]ACGGCAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAG</left_flank>
        <right_flank>ACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAA</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCGTCGCCAAAGGAAGGCAGGTGCAGTAACCAAAGGAAGGAAGAAGCGAAAGAAGCGAAGGAAGACCGCCGTCAAGGGCGGCGTCAAAAAAAGAAGGAAAACTAGGAAGAAGAAAACAATGAGCGGCGTTTCGAAGAAGCTGAAAAGGATGACGGAGCCGGAACTCGGAATAAGAAGCAGGTTAGTTCTGTAGATATGAAGTGAGAGTGAGGGAAGAGGAGAGAGATAGAGAAAGAACGAGTCTCCCGATGAGTGTAATTTTGACCCTTTGTTGTAGTCTTTTTTCCCATCGTGTGCCGTCTGTTTGATCTGTTCTGTACACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTT</canonical>
            <polymorphic>TCCGTCGCCAAAGGAAGGCAGGTGCAGTAACCAAAGGAAGGAAGAAGCGAAAGAAGCGAAGGAAGACCGCCGTCAAGGGCGGCGTCAAAAAAAGAAGGAAAACTAGGAAGAAGAAAACAATGAGCGGCGTTTCGAAGAAGCTGAAAAGGATGACGGAGCCGGAACTCGGAATAAGAAGCAGGTTAGTTCTGTAGATATGAAGTGAGAGTGAGGGAAGAGGAGAGAGATAGAGAAAGAACGAGTCTCCCGATGAGTGTAATTTTGACCCTTTGTTGTAGTCTTTTTTCCCATCGTGTGCCGTCTGTTTGATCTGTTCTGTACACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGYACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>180 95 95 81 76 70 58 49 46 39 37 33 25 24 24 23 14 11 7 6 5 2</canonical_bands>
                <polymorphic_bands>180 95 95 81 76 70 58 49 46 42 39 33 25 24 24 23 14 11 7 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACTGTACAAAAATCACATCGT</pcr_primer_p1>
		<pcr_primer_p2>GGGGACGGTTTAAACTTATT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCC</canonical_amplicon>
		<polymorphic_amplicon>CACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGYACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29139</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>177612</contig_pos>
        <strand>+</strand>
        <context>TAGCAGCAAC[C/T]ACTTTTTTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAAC</left_flank>
        <right_flank>ACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGGAAGAAGCGAAAGAAGCGAAGGAAGACCGCCGTCAAGGGCGGCGTCAAAAAAAGAAGGAAAACTAGGAAGAAGAAAACAATGAGCGGCGTTTCGAAGAAGCTGAAAAGGATGACGGAGCCGGAACTCGGAATAAGAAGCAGGTTAGTTCTGTAGATATGAAGTGAGAGTGAGGGAAGAGGAGAGAGATAGAGAAAGAACGAGTCTCCCGATGAGTGTAATTTTGACCCTTTGTTGTAGTCTTTTTTCCCATCGTGTGCCGTCTGTTTGATCTGTTCTGTACACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCC</canonical>
            <polymorphic>AAGGAAGAAGCGAAAGAAGCGAAGGAAGACCGCCGTCAAGGGCGGCGTCAAAAAAAGAAGGAAAACTAGGAAGAAGAAAACAATGAGCGGCGTTTCGAAGAAGCTGAAAAGGATGACGGAGCCGGAACTCGGAATAAGAAGCAGGTTAGTTCTGTAGATATGAAGTGAGAGTGAGGGAAGAGGAGAGAGATAGAGAAAGAACGAGTCTCCCGATGAGTGTAATTTTGACCCTTTGTTGTAGTCTTTTTTCCCATCGTGTGCCGTCTGTTTGATCTGTTCTGTACACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACYACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>167 132 95 81 76 70 58 49 46 39 37 33 25 24 23 14 11 7 6 5 2</canonical_bands>
                <polymorphic_bands>167 132 95 95 81 76 70 49 46 39 33 25 24 23 14 11 7 6 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTGTGTTTTTCACTTTCTGATT</pcr_primer_p1>
		<pcr_primer_p2>GCAGATCCTAGCAAACAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>941</pcr_amplicon_size>
		<canonical_amplicon>CTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATA</canonical_amplicon>
		<polymorphic_amplicon>CTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACYACTTTTTTCGAAACTAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29140</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>177661</contig_pos>
        <strand>+</strand>
        <context>CGCAATGGTT[C/T]CATTGAAGTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTT</left_flank>
        <right_flank>CATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAAGAAGGAAAACTAGGAAGAAGAAAACAATGAGCGGCGTTTCGAAGAAGCTGAAAAGGATGACGGAGCCGGAACTCGGAATAAGAAGCAGGTTAGTTCTGTAGATATGAAGTGAGAGTGAGGGAAGAGGAGAGAGATAGAGAAAGAACGAGTCTCCCGATGAGTGTAATTTTGACCCTTTGTTGTAGTCTTTTTTCCCATCGTGTGCCGTCTGTTTGATCTGTTCTGTACACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAA</canonical>
            <polymorphic>AAAAAAAGAAGGAAAACTAGGAAGAAGAAAACAATGAGCGGCGTTTCGAAGAAGCTGAAAAGGATGACGGAGCCGGAACTCGGAATAAGAAGCAGGTTAGTTCTGTAGATATGAAGTGAGAGTGAGGGAAGAGGAGAGAGATAGAGAAAGAACGAGTCTCCCGATGAGTGTAATTTTGACCCTTTGTTGTAGTCTTTTTTCCCATCGTGTGCCGTCTGTTTGATCTGTTCTGTACACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTYCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>427 264 71 58 50 41 40 20 20 9</canonical_bands>
                <polymorphic_bands>485 264 71 50 41 40 20 20 9</polymorphic_bands>
            </assay>
            <assay>
                <site>CCANNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>BstXI</enzyme>
                </isoschizomers>
                <canonical_bands>493 493 14</canonical_bands>
                <polymorphic_bands>507 493</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACTTGATTTCTTCCGTAGCA</pcr_primer_p1>
		<pcr_primer_p2>GCAGATCCTAGCAAACAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>892</pcr_amplicon_size>
		<canonical_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGC</canonical_amplicon>
		<polymorphic_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTYCATTGAAGTGGCAACGATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29141</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>177679</contig_pos>
        <strand>+</strand>
        <context>GTGGCAACGA[A/T]GCAAAAggcc</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGA</left_flank>
        <right_flank>GCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAAGAAGAAAACAATGAGCGGCGTTTCGAAGAAGCTGAAAAGGATGACGGAGCCGGAACTCGGAATAAGAAGCAGGTTAGTTCTGTAGATATGAAGTGAGAGTGAGGGAAGAGGAGAGAGATAGAGAAAGAACGAGTCTCCCGATGAGTGTAATTTTGACCCTTTGTTGTAGTCTTTTTTCCCATCGTGTGCCGTCTGTTTGATCTGTTCTGTACACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCA</canonical>
            <polymorphic>AGGAAGAAGAAAACAATGAGCGGCGTTTCGAAGAAGCTGAAAAGGATGACGGAGCCGGAACTCGGAATAAGAAGCAGGTTAGTTCTGTAGATATGAAGTGAGAGTGAGGGAAGAGGAGAGAGATAGAGAAAGAACGAGTCTCCCGATGAGTGTAATTTTGACCCTTTGTTGTAGTCTTTTTTCCCATCGTGTGCCGTCTGTTTGATCTGTTCTGTACACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGAWGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>370 291 210 129</canonical_bands>
                <polymorphic_bands>580 291 129</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACTTGATTTCTTCCGTAGCA</pcr_primer_p1>
		<pcr_primer_p2>GCAGATCCTAGCAAACAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>892</pcr_amplicon_size>
		<canonical_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAA</canonical_amplicon>
		<polymorphic_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGAWGCAAAAGGCCTTACGGGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29142</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>177736</contig_pos>
        <strand></strand>
        <context>ttccaacatc[G/A]aaccaccrrt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATC</left_flank>
        <right_flank>AACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACTCGGAATAAGAAGCAGGTTAGTTCTGTAGATATGAAGTGAGAGTGAGGGAAGAGGAGAGAGATAGAGAAAGAACGAGTCTCCCGATGAGTGTAATTTTGACCCTTTGTTGTAGTCTTTTTTCCCATCGTGTGCCGTCTGTTTGATCTGTTCTGTACACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATA</canonical>
            <polymorphic>GAACTCGGAATAAGAAGCAGGTTAGTTCTGTAGATATGAAGTGAGAGTGAGGGAAGAGGAGAGAGATAGAGAAAGAACGAGTCTCCCGATGAGTGTAATTTTGACCCTTTGTTGTAGTCTTTTTTCCCATCGTGTGCCGTCTGTTTGATCTGTTCTGTACACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCRAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 385 114</canonical_bands>
                <polymorphic_bands>615 385</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACTTGATTTCTTCCGTAGCA</pcr_primer_p1>
		<pcr_primer_p2>GCAGATCCTAGCAAACAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>892</pcr_amplicon_size>
		<canonical_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATT</canonical_amplicon>
		<polymorphic_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCRAACCACCGGTCCCGAGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29143</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>177744</contig_pos>
        <strand></strand>
        <context>tcraaccacc[G/A]rtyccgagaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACC</left_flank>
        <right_flank>GTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAAGAAGCAGGTTAGTTCTGTAGATATGAAGTGAGAGTGAGGGAAGAGGAGAGAGATAGAGAAAGAACGAGTCTCCCGATGAGTGTAATTTTGACCCTTTGTTGTAGTCTTTTTTCCCATCGTGTGCCGTCTGTTTGATCTGTTCTGTACACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATT</canonical>
            <polymorphic>AATAAGAAGCAGGTTAGTTCTGTAGATATGAAGTGAGAGTGAGGGAAGAGGAGAGAGATAGAGAAAGAACGAGTCTCCCGATGAGTGTAATTTTGACCCTTTGTTGTAGTCTTTTTTCCCATCGTGTGCCGTCTGTTTGATCTGTTCTGTACACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCRGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>472 399 60 41 28</canonical_bands>
                <polymorphic_bands>472 399 69 60</polymorphic_bands>
            </assay>
            <assay>
                <site>ACCGGT</site>
                <isoschizomers>
                    <enzyme>AgeI</enzyme>
                    <enzyme>AsiAI</enzyme>
                    <enzyme>BshTI</enzyme>
                    <enzyme>CspAI</enzyme>
                    <enzyme>PinAI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>472 399 60 41 28</canonical_bands>
                <polymorphic_bands>472 399 69 60</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>497 334 169</canonical_bands>
                <polymorphic_bands>831 169</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>415 347 58 50 41 40 20 20 9</canonical_bands>
                <polymorphic_bands>415 347 61 58 50 40 20 9</polymorphic_bands>
            </assay>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>503 477 20</canonical_bands>
                <polymorphic_bands>523 477</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>478 222 168 112 20</canonical_bands>
                <polymorphic_bands>478 222 168 132</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACTTGATTTCTTCCGTAGCA</pcr_primer_p1>
		<pcr_primer_p2>GCAGATCCTAGCAAACAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>892</pcr_amplicon_size>
		<canonical_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAAC</canonical_amplicon>
		<polymorphic_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCRGTCCCGAGAATTGCGATAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29144</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>177745</contig_pos>
        <strand></strand>
        <context>craaccaccr[G/A]tyccgagaat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCG</left_flank>
        <right_flank>TCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAGAAGCAGGTTAGTTCTGTAGATATGAAGTGAGAGTGAGGGAAGAGGAGAGAGATAGAGAAAGAACGAGTCTCCCGATGAGTGTAATTTTGACCCTTTGTTGTAGTCTTTTTTCCCATCGTGTGCCGTCTGTTTGATCTGTTCTGTACACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTT</canonical>
            <polymorphic>ATAAGAAGCAGGTTAGTTCTGTAGATATGAAGTGAGAGTGAGGGAAGAGGAGAGAGATAGAGAAAGAACGAGTCTCCCGATGAGTGTAATTTTGACCCTTTGTTGTAGTCTTTTTTCCCATCGTGTGCCGTCTGTTTGATCTGTTCTGTACACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGRTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>471 400 60 41 28</canonical_bands>
                <polymorphic_bands>471 400 69 60</polymorphic_bands>
            </assay>
            <assay>
                <site>ACCGGT</site>
                <isoschizomers>
                    <enzyme>AgeI</enzyme>
                    <enzyme>AsiAI</enzyme>
                    <enzyme>BshTI</enzyme>
                    <enzyme>CspAI</enzyme>
                    <enzyme>PinAI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>471 400 60 41 28</canonical_bands>
                <polymorphic_bands>471 400 69 60</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>496 334 170</canonical_bands>
                <polymorphic_bands>830 170</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>414 348 58 50 41 40 20 20 9</canonical_bands>
                <polymorphic_bands>414 348 61 58 50 40 20 9</polymorphic_bands>
            </assay>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>504 476 20</canonical_bands>
                <polymorphic_bands>524 476</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>477 222 169 112 20</canonical_bands>
                <polymorphic_bands>477 222 169 132</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACTTGATTTCTTCCGTAGCA</pcr_primer_p1>
		<pcr_primer_p2>GCAGATCCTAGCAAACAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>892</pcr_amplicon_size>
		<canonical_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACG</canonical_amplicon>
		<polymorphic_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGRTCCCGAGAATTGCGATAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29145</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>177747</contig_pos>
        <strand></strand>
        <context>aaccaccrrt[C/T]ccgagaattg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGT</left_flank>
        <right_flank>CCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAAGCAGGTTAGTTCTGTAGATATGAAGTGAGAGTGAGGGAAGAGGAGAGAGATAGAGAAAGAACGAGTCTCCCGATGAGTGTAATTTTGACCCTTTGTTGTAGTCTTTTTTCCCATCGTGTGCCGTCTGTTTGATCTGTTCTGTACACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCT</canonical>
            <polymorphic>AAGAAGCAGGTTAGTTCTGTAGATATGAAGTGAGAGTGAGGGAAGAGGAGAGAGATAGAGAAAGAACGAGTCTCCCGATGAGTGTAATTTTGACCCTTTGTTGTAGTCTTTTTTCCCATCGTGTGCCGTCTGTTTGATCTGTTCTGTACACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTYCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>469 402 60 41 28</canonical_bands>
                <polymorphic_bands>469 402 69 60</polymorphic_bands>
            </assay>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>469 402 60 41 28</canonical_bands>
                <polymorphic_bands>469 402 69 60</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>426 260 171 74 69</canonical_bands>
                <polymorphic_bands>495 260 171 74</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACTTGATTTCTTCCGTAGCA</pcr_primer_p1>
		<pcr_primer_p2>GCAGATCCTAGCAAACAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>892</pcr_amplicon_size>
		<canonical_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGAT</canonical_amplicon>
		<polymorphic_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTYCCGAGAATTGCGATAACGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29146</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>177759</contig_pos>
        <strand></strand>
        <context>cgagaattgc[G/T]ataacgatcc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGC</left_flank>
        <right_flank>ATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATAC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTCTGTAGATATGAAGTGAGAGTGAGGGAAGAGGAGAGAGATAGAGAAAGAACGAGTCTCCCGATGAGTGTAATTTTGACCCTTTGTTGTAGTCTTTTTTCCCATCGTGTGCCGTCTGTTTGATCTGTTCTGTACACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAAC</canonical>
            <polymorphic>AGTTCTGTAGATATGAAGTGAGAGTGAGGGAAGAGGAGAGAGATAGAGAAAGAACGAGTCTCCCGATGAGTGTAATTTTGACCCTTTGTTGTAGTCTTTTTTCCCATCGTGTGCCGTCTGTTTGATCTGTTCTGTACACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCKATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATNNNNATC</site>
                <isoschizomers>
                    <enzyme>BsaBI</enzyme>
                    <enzyme>Bse8I</enzyme>
                    <enzyme>BseJI</enzyme>
                    <enzyme>BsiBI</enzyme>
                    <enzyme>BsrBRI</enzyme>
                    <enzyme>MamI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACTTGATTTCTTCCGTAGCA</pcr_primer_p1>
		<pcr_primer_p2>GCAGATCCTAGCAAACAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>892</pcr_amplicon_size>
		<canonical_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGG</canonical_amplicon>
		<polymorphic_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCKATAACGATCCCATTGTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29147</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>177789</contig_pos>
        <strand></strand>
        <context>gaaaacggtc[C/T]cattgttccg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTC</left_flank>
        <right_flank>CATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAGGAGAGAGATAGAGAAAGAACGAGTCTCCCGATGAGTGTAATTTTGACCCTTTGTTGTAGTCTTTTTTCCCATCGTGTGCCGTCTGTTTGATCTGTTCTGTACACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACC</canonical>
            <polymorphic>AAGAGGAGAGAGATAGAGAAAGAACGAGTCTCCCGATGAGTGTAATTTTGACCCTTTGTTGTAGTCTTTTTTCCCATCGTGTGCCGTCTGTTTGATCTGTTCTGTACACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCYCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>440 427 60 41 28 4</canonical_bands>
                <polymorphic_bands>440 427 101 28 4</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>440 427 60 41 28 4</canonical_bands>
                <polymorphic_bands>440 427 101 28 4</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>389 370 58 50 41 40 20 20 9 3</canonical_bands>
                <polymorphic_bands>389 370 81 58 50 20 20 9 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACTTGATTTCTTCCGTAGCA</pcr_primer_p1>
		<pcr_primer_p2>GCAGATCCTAGCAAACAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>892</pcr_amplicon_size>
		<canonical_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATAC</canonical_amplicon>
		<polymorphic_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCYCATTGTTCCGAAAAAAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29148</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>177801</contig_pos>
        <strand></strand>
        <context>attgttccga[A/G]aaaartmcta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGA</left_flank>
        <right_flank>AAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGAGAAAGAACGAGTCTCCCGATGAGTGTAATTTTGACCCTTTGTTGTAGTCTTTTTTCCCATCGTGTGCCGTCTGTTTGATCTGTTCTGTACACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACCGTTGTCGTACCC</canonical>
            <polymorphic>ATAGAGAAAGAACGAGTCTCCCGATGAGTGTAATTTTGACCCTTTGTTGTAGTCTTTTTTCCCATCGTGTGCCGTCTGTTTGATCTGTTCTGTACACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGARAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACCGTTGTCGTACCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACTTGATTTCTTCCGTAGCA</pcr_primer_p1>
		<pcr_primer_p2>GCAGATCCTAGCAAACAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>892</pcr_amplicon_size>
		<canonical_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGAC</canonical_amplicon>
		<polymorphic_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGARAAAAATACTAACGTCCCGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29149</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>177806</contig_pos>
        <strand></strand>
        <context>tccgaraaaa[A/G]tmctaacgtc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAA</left_flank>
        <right_flank>TACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAGAACGAGTCTCCCGATGAGTGTAATTTTGACCCTTTGTTGTAGTCTTTTTTCCCATCGTGTGCCGTCTGTTTGATCTGTTCTGTACACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACCGTTGTCGTACCCTTGGG</canonical>
            <polymorphic>GAAAGAACGAGTCTCCCGATGAGTGTAATTTTGACCCTTTGTTGTAGTCTTTTTTCCCATCGTGTGCCGTCTGTTTGATCTGTTCTGTACACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAARTACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACCGTTGTCGTACCCTTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACTTGATTTCTTCCGTAGCA</pcr_primer_p1>
		<pcr_primer_p2>GCAGATCCTAGCAAACAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>892</pcr_amplicon_size>
		<canonical_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGG</canonical_amplicon>
		<polymorphic_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAARTACTAACGTCCCGACACAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29150</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>177808</contig_pos>
        <strand></strand>
        <context>cgaraaaart[A/C]ctaacgtccy</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAAT</left_flank>
        <right_flank>CTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAACGAGTCTCCCGATGAGTGTAATTTTGACCCTTTGTTGTAGTCTTTTTTCCCATCGTGTGCCGTCTGTTTGATCTGTTCTGTACACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACCGTTGTCGTACCCTTGGGAC</canonical>
            <polymorphic>AAGAACGAGTCTCCCGATGAGTGTAATTTTGACCCTTTGTTGTAGTCTTTTTTCCCATCGTGTGCCGTCTGTTTGATCTGTTCTGTACACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATMCTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACCGTTGTCGTACCCTTGGGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACTTGATTTCTTCCGTAGCA</pcr_primer_p1>
		<pcr_primer_p2>GCAGATCCTAGCAAACAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>892</pcr_amplicon_size>
		<canonical_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTT</canonical_amplicon>
		<polymorphic_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATMCTAACGTCCCGACACAGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29151</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>177818</contig_pos>
        <strand></strand>
        <context>mctaacgtcc[C/T]gacacakgtt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCC</left_flank>
        <right_flank>GACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCCGATGAGTGTAATTTTGACCCTTTGTTGTAGTCTTTTTTCCCATCGTGTGCCGTCTGTTTGATCTGTTCTGTACACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACCGTTGTCGTACCCTTGGGACCGTTCTCGCA</canonical>
            <polymorphic>CTCCCGATGAGTGTAATTTTGACCCTTTGTTGTAGTCTTTTTTCCCATCGTGTGCCGTCTGTTTGATCTGTTCTGTACACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCYGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACCGTTGTCGTACCCTTGGGACCGTTCTCGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACTTGATTTCTTCCGTAGCA</pcr_primer_p1>
		<pcr_primer_p2>GCAGATCCTAGCAAACAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>892</pcr_amplicon_size>
		<canonical_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTAC</canonical_amplicon>
		<polymorphic_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCYGACACAGGTTCCAACGGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29152</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>177825</contig_pos>
        <strand></strand>
        <context>tccygacaca[G/T]gttccaacgg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACA</left_flank>
        <right_flank>GTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGTGTAATTTTGACCCTTTGTTGTAGTCTTTTTTCCCATCGTGTGCCGTCTGTTTGATCTGTTCTGTACACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACCGTTGTCGTACCCTTGGGACCGTTCTCGCAACGATGG</canonical>
            <polymorphic>TGAGTGTAATTTTGACCCTTTGTTGTAGTCTTTTTTCCCATCGTGTGCCGTCTGTTTGATCTGTTCTGTACACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAKGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACCGTTGTCGTACCCTTGGGACCGTTCTCGCAACGATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>388 253 250 62 47</canonical_bands>
                <polymorphic_bands>388 300 250 62</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>389 334 58 50 41 40 20 20 20 19 9</canonical_bands>
                <polymorphic_bands>389 334 60 58 50 41 20 20 19 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACTTGATTTCTTCCGTAGCA</pcr_primer_p1>
		<pcr_primer_p2>GCAGATCCTAGCAAACAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>892</pcr_amplicon_size>
		<canonical_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACG</canonical_amplicon>
		<polymorphic_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAKGTTCCAACGGTACAACAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29153</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>177875</contig_pos>
        <strand></strand>
        <context>tggaaaacct[A/T]atcaaaagta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCT</left_flank>
        <right_flank>ATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGTTTGATCTGTTCTGTACACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACCGTTGTCGTACCCTTGGGACCGTTCTCGCAACGATGGGACAGTAGTCGGATCAATGGGACTGTTGTCGAACCAATGGGATCGTTGTC</canonical>
            <polymorphic>TCTGTTTGATCTGTTCTGTACACTGTACAAAAATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTWATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACCGTTGTCGTACCCTTGGGACCGTTCTCGCAACGATGGGACAGTAGTCGGATCAATGGGACTGTTGTCGAACCAATGGGATCGTTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACTTGATTTCTTCCGTAGCA</pcr_primer_p1>
		<pcr_primer_p2>GCAGATCCTAGCAAACAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>892</pcr_amplicon_size>
		<canonical_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCG</canonical_amplicon>
		<polymorphic_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTWATCAAAAGTATGGTTTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29154</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>177907</contig_pos>
        <strand></strand>
        <context>tgccattttt[T/G]gatgttmtta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTT</left_flank>
        <right_flank>GATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACCGTTGTCGTACCCTTGGGACCGTTCTCGCAACGATGGGACAGTAGTCGGATCAATGGGACTGTTGTCGAACCAATGGGATCGTTGTCAAAGTTCGTCGGGGCCGGCGGTCCGATGATGG</canonical>
            <polymorphic>ATCACATCGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTKGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACCGTTGTCGTACCCTTGGGACCGTTCTCGCAACGATGGGACAGTAGTCGGATCAATGGGACTGTTGTCGAACCAATGGGATCGTTGTCAAAGTTCGTCGGGGCCGGCGGTCCGATGATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACTTGATTTCTTCCGTAGCA</pcr_primer_p1>
		<pcr_primer_p2>GCAGATCCTAGCAAACAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>892</pcr_amplicon_size>
		<canonical_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAA</canonical_amplicon>
		<polymorphic_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTKGATGTTCTTACAGAAATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29155</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>177914</contig_pos>
        <strand></strand>
        <context>tttkgatgtt[C/A]ttacagaaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTT</left_flank>
        <right_flank>TTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACCGTTGTCGTACCCTTGGGACCGTTCTCGCAACGATGGGACAGTAGTCGGATCAATGGGACTGTTGTCGAACCAATGGGATCGTTGTCAAAGTTCGTCGGGGCCGGCGGTCCGATGATGGGACCGAC</canonical>
            <polymorphic>CGTTTTTTACGCCGTCTGCCAGCAACCCTTTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTMTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACCGTTGTCGTACCCTTGGGACCGTTCTCGCAACGATGGGACAGTAGTCGGATCAATGGGACTGTTGTCGAACCAATGGGATCGTTGTCAAAGTTCGTCGGGGCCGGCGGTCCGATGATGGGACCGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACTTGATTTCTTCCGTAGCA</pcr_primer_p1>
		<pcr_primer_p2>GCAGATCCTAGCAAACAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>892</pcr_amplicon_size>
		<canonical_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTMTTACAGAAATGAAGGTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29156</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>177943</contig_pos>
        <strand></strand>
        <context>ttcagcctaa[G/A]ctttaawctc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAA</left_flank>
        <right_flank>CTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACCGTTGTCGTACCCTTGGGACCGTTCTCGCAACGATGGGACAGTAGTCGGATCAATGGGACTGTTGTCGAACCAATGGGATCGTTGTCAAAGTTCGTCGGGGCCGGCGGTCCGATGATGGGACCGACGGTCTCGCTTTGGGACCGTTCTTCCCGGA</canonical>
            <polymorphic>TTCATTCATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAARCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACCGTTGTCGTACCCTTGGGACCGTTCTCGCAACGATGGGACAGTAGTCGGATCAATGGGACTGTTGTCGAACCAATGGGATCGTTGTCAAAGTTCGTCGGGGCCGGCGGTCCGATGATGGGACCGACGGTCTCGCTTTGGGACCGTTCTTCCCGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>500 362 138</canonical_bands>
                <polymorphic_bands>638 362</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>496 223 116 114 51</canonical_bands>
                <polymorphic_bands>612 223 114 51</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>229 170 166 113 111 80 54 23 21 15 6 6 6</canonical_bands>
                <polymorphic_bands>229 170 166 117 113 80 54 23 21 15 6 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACTTGATTTCTTCCGTAGCA</pcr_primer_p1>
		<pcr_primer_p2>GCAGATCCTAGCAAACAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>892</pcr_amplicon_size>
		<canonical_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAA</canonical_amplicon>
		<polymorphic_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAARCTTTAATCTCTAAACTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29157</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>177950</contig_pos>
        <strand></strand>
        <context>taarctttaa[T/A]ctctaaactt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAA</left_flank>
        <right_flank>CTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACCGTTGTCGTACCCTTGGGACCGTTCTCGCAACGATGGGACAGTAGTCGGATCAATGGGACTGTTGTCGAACCAATGGGATCGTTGTCAAAGTTCGTCGGGGCCGGCGGTCCGATGATGGGACCGACGGTCTCGCTTTGGGACCGTTCTTCCCGGAAAGAGCC</canonical>
            <polymorphic>ATCGGGGGCTGCCTCTAATGCATCGTTCCTCTATTTTTCTTTTTTTTCCCTTCTCACCGAATTTTTTTTCCAAATTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAAWCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACCGTTGTCGTACCCTTGGGACCGTTCTCGCAACGATGGGACAGTAGTCGGATCAATGGGACTGTTGTCGAACCAATGGGATCGTTGTCAAAGTTCGTCGGGGCCGGCGGTCCGATGATGGGACCGACGGTCTCGCTTTGGGACCGTTCTTCCCGGAAAGAGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACTTGATTTCTTCCGTAGCA</pcr_primer_p1>
		<pcr_primer_p2>GCAGATCCTAGCAAACAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>892</pcr_amplicon_size>
		<canonical_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAAWCTCTAAACTTTAAAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29158</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>178024</contig_pos>
        <strand></strand>
        <context>caatattttt[A/C]gacaggacat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTT</left_flank>
        <right_flank>GACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACCGTTGTCGTACCCTTGGGACCGTTCTCGCAACGATGGGACAGTAGTCGGATCAATGGGACTGTTGTCGAACCAATGGGATCGTTGTCAAAGTTCGTCGGGGCCGGCGGTCCGATGATGGGACCGACGGTCTCGCTTTGGGACCGTTCTTCCCGGAAAGAGCCAAAATATCTTGTTTGCTAGGATCTGCCCCTTTCATTATAGAACAATTCTGCACGTTTTGGAGTTTTTTTAAATT</canonical>
            <polymorphic>TTTTCACCTGACTTGTGTTTTTCACTTTCTGATTAGATCTACTTGTGAAGCACGGCAAAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTMGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACCGTTGTCGTACCCTTGGGACCGTTCTCGCAACGATGGGACAGTAGTCGGATCAATGGGACTGTTGTCGAACCAATGGGATCGTTGTCAAAGTTCGTCGGGGCCGGCGGTCCGATGATGGGACCGACGGTCTCGCTTTGGGACCGTTCTTCCCGGAAAGAGCCAAAATATCTTGTTTGCTAGGATCTGCCCCTTTCATTATAGAACAATTCTGCACGTTTTGGAGTTTTTTTAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACTTGATTTCTTCCGTAGCA</pcr_primer_p1>
		<pcr_primer_p2>GCAGATCCTAGCAAACAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>892</pcr_amplicon_size>
		<canonical_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACCGTTGTCGTACCCTTGGGACCGTTCTCGCAACGATGGGACAGTAGTCGGATCAATGGGACTGTTGTCGAACCAATGGGATCGTTGTCAAAGTTCGTCGGGGCCGGCGGTCCGATGATGGGACCGACGGTCTCGCTTTGGGACCGTTCTTCCCGGAAAGAGCCAAAATATCTTGTTTGCTAGGATCTGC</canonical_amplicon>
		<polymorphic_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTMGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACCGTTGTCGTACCCTTGGGACCGTTCTCGCAACGATGGGACAGTAGTCGGATCAATGGGACTGTTGTCGAACCAATGGGATCGTTGTCAAAGTTCGTCGGGGCCGGCGGTCCGATGATGGGACCGACGGTCTCGCTTTGGGACCGTTCTTCCCGGAAAGAGCCAAAATATCTTGTTTGCTAGGATCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29159</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>178081</contig_pos>
        <strand></strand>
        <context>cttttccgga[G/A]ctaatgttaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGA</left_flank>
        <right_flank>CTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACCGTTGTCGTACCCTTGGGACCGTTCTCGCAACGATGGGACAGTAGTCGGATCAATGGGACTGTTGTCGAACCAATGGGATCGTTGTCAAAGTTCGTCGGGGCCGGCGGTCCGATGATGGGACCGACGGTCTCGCTTTGGGACCGTTCTTCCCGGAAAGAGCCAAAATATCTTGTTTGCTAGGATCTGCCCCTTTCATTATAGAACAATTCTGCACGTTTTGGAGTTTTTTTAAATTCAGAATTAGATTAGAATCTGAATTTTGAATTTTTCTATTCTAATTTTTCCTTATATA</canonical>
            <polymorphic>AAAATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGARCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACCGTTGTCGTACCCTTGGGACCGTTCTCGCAACGATGGGACAGTAGTCGGATCAATGGGACTGTTGTCGAACCAATGGGATCGTTGTCAAAGTTCGTCGGGGCCGGCGGTCCGATGATGGGACCGACGGTCTCGCTTTGGGACCGTTCTTCCCGGAAAGAGCCAAAATATCTTGTTTGCTAGGATCTGCCCCTTTCATTATAGAACAATTCTGCACGTTTTGGAGTTTTTTTAAATTCAGAATTAGATTAGAATCTGAATTTTGAATTTTTCTATTCTAATTTTTCCTTATATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>500 362 138</canonical_bands>
                <polymorphic_bands>638 362</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>170 166 133 113 111 106 80 59 23 21 6 6 6</canonical_bands>
                <polymorphic_bands>170 166 133 113 111 106 80 59 44 6 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACTTGATTTCTTCCGTAGCA</pcr_primer_p1>
		<pcr_primer_p2>GCAGATCCTAGCAAACAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>892</pcr_amplicon_size>
		<canonical_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACCGTTGTCGTACCCTTGGGACCGTTCTCGCAACGATGGGACAGTAGTCGGATCAATGGGACTGTTGTCGAACCAATGGGATCGTTGTCAAAGTTCGTCGGGGCCGGCGGTCCGATGATGGGACCGACGGTCTCGCTTTGGGACCGTTCTTCCCGGAAAGAGCCAAAATATCTTGTTTGCTAGGATCTGC</canonical_amplicon>
		<polymorphic_amplicon>ATACTTGATTTCTTCCGTAGCAGCAACCACTTTTTTCGAAACTAAATAAGTTTAAACCGTCCCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGARCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACCGTTGTCGTACCCTTGGGACCGTTCTCGCAACGATGGGACAGTAGTCGGATCAATGGGACTGTTGTCGAACCAATGGGATCGTTGTCAAAGTTCGTCGGGGCCGGCGGTCCGATGATGGGACCGACGGTCTCGCTTTGGGACCGTTCTTCCCGGAAAGAGCCAAAATATCTTGTTTGCTAGGATCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29160</snp_id>
        <super_contig>c004400795.Contig3</super_contig>
        <contig_pos>178145</contig_pos>
        <strand></strand>
        <context>gaataatctg[A/C]aaaaattcca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTG</left_flank>
        <right_flank>AAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACCGTTGTCGTACCCTTGGGACCGTTCTCGCAACGATGGGACAGTAGTCGGATCAATGGGACTGTTGTCGAACCAATGGGATCGTTGTCAAAGTTCGTCGGGGCCGGCGGTCCGATGATGGGACCGACGGTCTCGCTTTGGGACCGTTCTTCCCGGAAAGAGCCAAAATATCTTGTTTGCTAGGATCTGCCCCTTTCATTATAGAACAATTCTGCACGTTTTGGAGTTTTTTTAAATTCAGAATTAGATTAGAATCTGAATTTTGAATTTTTCTATTCTAATTTTTCCTTATATAAATAGATTTTAAGTTTCACCAACTTACAAGGGAACCTCAGCACTTTGTAAACCTAGATTTTGAT</canonical>
            <polymorphic>CCCAACGCAATGGTTCCATTGAAGTGGCAACGATGCAAAAGGCCTTACGGGGAAGAACTGTCCCAAAACGGGACCGCCGGTTCCAACATCGAACCACCGGTCCCGAGAATTGCGATAACGATCCCATTGTTTGGAAAACGGTCCCATTGTTCCGAAAAAAATACTAACGTCCCGACACAGGTTCCAACGGTACAACAACGGTCCCAACCCGGCTTGCTTTGGAAAACCTAATCAAAAGTATGGTTTTTCGGTGCCATTTTTTGATGTTCTTACAGAAATGAAGGTGTTTCAGCCTAAGCTTTAATCTCTAAACTTTAAAGAAAAAAAAACCAGTGGAAAAAGTTAAAATGTTTGGTATTTGGGAATTTCAATATTTTTAGACAGGACATTATGTTTTTTGTCTTGCAGGCTTAGGCTAAATCGCCCTTTTCCGGAGCTAATGTTAACGCTCCGTTTTAGCCTAAGCCTATAATTTTAATCAAAATAACAGAATAATCTGMAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACCGTTGTCGTACCCTTGGGACCGTTCTCGCAACGATGGGACAGTAGTCGGATCAATGGGACTGTTGTCGAACCAATGGGATCGTTGTCAAAGTTCGTCGGGGCCGGCGGTCCGATGATGGGACCGACGGTCTCGCTTTGGGACCGTTCTTCCCGGAAAGAGCCAAAATATCTTGTTTGCTAGGATCTGCCCCTTTCATTATAGAACAATTCTGCACGTTTTGGAGTTTTTTTAAATTCAGAATTAGATTAGAATCTGAATTTTGAATTTTTCTATTCTAATTTTTCCTTATATAAATAGATTTTAAGTTTCACCAACTTACAAGGGAACCTCAGCACTTTGTAAACCTAGATTTTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>345 193 153 127 102 63 17</canonical_bands>
                <polymorphic_bands>538 153 127 102 63 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACTTGATTTCTTCCGTAGCA</pcr_primer_p1>
		<pcr_primer_p2>GCAGATCCTAGCAAACAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>892</pcr_amplicon_size>
		<canonical_amplicon>GAAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACCGTTGTCGTACCCTTGGGACCGTTCTCGCAACGATGGGACAGTAGTCGGATCAATGGGACTGTTGTCGAACCAATGGGATCGTTGTCAAAGTTCGTCGGGGCCGGCGGTCCGATGATGGGACCGACGGTCTCGCTTTGGGACCGTTCTTCCCGGAAAGAGCCAAAATATCTTGTTTGCTAGGATCTGC</canonical_amplicon>
		<polymorphic_amplicon>GMAAAAATTCCAGTAAAAAAAGTGTTGAAATTCTCAATTCCCAGCAAAATTTTCATTTTGTCGCGGAAATGTGTTTCTTAGTTGAAACGAATAATTAAATTTCTAATTTTCCAAACAGGGTCTCCAGACCAAGCCTGATTGGGACCGTTGTCGTACCCTTGGGACCGTTCTCGCAACGATGGGACAGTAGTCGGATCAATGGGACTGTTGTCGAACCAATGGGATCGTTGTCAAAGTTCGTCGGGGCCGGCGGTCCGATGATGGGACCGACGGTCTCGCTTTGGGACCGTTCTTCCCGGAAAGAGCCAAAATATCTTGTTTGCTAGGATCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29161</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>28718</contig_pos>
        <strand></strand>
        <context>aattttttta[T/A]atyytgaaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAATTCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTA</left_flank>
        <right_flank>ATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAATTTTGGATGTTTCCCATAGAGATCATGAGCATTCAAAACGACTGGCAGTGGCAAATTTTGGCGCCAATTTGAATTTTTCGAAAAATGAGGGGATGTATGTTTTCTATTGATGCTGATCTGGTTAGATATGCCTATGAGGGAGAGAATTTCAAGGTTTGTCAGTTTTTTTTGGAAATTCGGAAATTCAAAATGTTAAAAATTCCGAAATTCGATAAATTCAGAAATTCAGAAATTCAGAAATTAAAAAATTCCGAAATTCAGAAACTCGGAAACTCGGAAATTCTGAAACTCTGAAATTCAGAAATGCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAAATCAGAAATTCTAAAAATTAGAAATTCAGAAATTCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTATATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAGCTACTCGACTGGAATCAAAATTCAGCCGGAAAGTGTGAAAATCCACGTTTTGGATTATGGATTCGAATACGATAATGATGGTTTTGCACTTGAAATTCAAATGGTGGTGAAATAATTTTTTTGAAAACATTTTTTTTTTTTTAAATTTCCTGTAATTTTTAATTTATAACATTTTTTTCAAAAATAAAACACTTTATTAATTCAAAAAGTTCAAAAAATCACAAAAAAGTTTTTTGAGATTTTTTCGAATTTCGAGCATTTTCTGGAAACTTCGAAATTGAAGACATCGGCTTTCTGGAGTCCTTGGAATCGGAATTTTTGGATTTTTGAGTTTTTTGAAA</canonical>
            <polymorphic>GCAATTTTGGATGTTTCCCATAGAGATCATGAGCATTCAAAACGACTGGCAGTGGCAAATTTTGGCGCCAATTTGAATTTTTCGAAAAATGAGGGGATGTATGTTTTCTATTGATGCTGATCTGGTTAGATATGCCTATGAGGGAGAGAATTTCAAGGTTTGTCAGTTTTTTTTGGAAATTCGGAAATTCAAAATGTTAAAAATTCCGAAATTCGATAAATTCAGAAATTCAGAAATTCAGAAATTAAAAAATTCCGAAATTCAGAAACTCGGAAACTCGGAAATTCTGAAACTCTGAAATTCAGAAATGCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAAATCAGAAATTCTAAAAATTAGAAATTCAGAAATTCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTAWATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAGCTACTCGACTGGAATCAAAATTCAGCCGGAAAGTGTGAAAATCCACGTTTTGGATTATGGATTCGAATACGATAATGATGGTTTTGCACTTGAAATTCAAATGGTGGTGAAATAATTTTTTTGAAAACATTTTTTTTTTTTTAAATTTCCTGTAATTTTTAATTTATAACATTTTTTTCAAAAATAAAACACTTTATTAATTCAAAAAGTTCAAAAAATCACAAAAAAGTTTTTTGAGATTTTTTCGAATTTCGAGCATTTTCTGGAAACTTCGAAATTGAAGACATCGGCTTTCTGGAGTCCTTGGAATCGGAATTTTTGGATTTTTGAGTTTTTTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAGAATTTCAAGGTTTGTCA</pcr_primer_p1>
		<pcr_primer_p2>CTTAAACCAGTGCCAATCTG</pcr_primer_p2>
		<pcr_amplicon_size>516</pcr_amplicon_size>
		<canonical_amplicon>GAGAGAATTTCAAGGTTTGTCAGTTTTTTTTGGAAATTCGGAAATTCAAAATGTTAAAAATTCCGAAATTCGATAAATTCAGAAATTCAGAAATTCAGAAATTAAAAAATTCCGAAATTCAGAAACTCGGAAACTCGGAAATTCTGAAACTCTGAAATTCAGAAATGCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAAATCAGAAATTCTAAAAATTAGAAATTCAGAAATTCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTATATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAG</canonical_amplicon>
		<polymorphic_amplicon>GAGAGAATTTCAAGGTTTGTCAGTTTTTTTTGGAAATTCGGAAATTCAAAATGTTAAAAATTCCGAAATTCGATAAATTCAGAAATTCAGAAATTCAGAAATTAAAAAATTCCGAAATTCAGAAACTCGGAAACTCGGAAATTCTGAAACTCTGAAATTCAGAAATGCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAAATCAGAAATTCTAAAAATTAGAAATTCAGAAATTCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTAWATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29162</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>28721</contig_pos>
        <strand></strand>
        <context>ttttttawat[C/T]ytgaaattct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTATAT</left_flank>
        <right_flank>TTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTGGATGTTTCCCATAGAGATCATGAGCATTCAAAACGACTGGCAGTGGCAAATTTTGGCGCCAATTTGAATTTTTCGAAAAATGAGGGGATGTATGTTTTCTATTGATGCTGATCTGGTTAGATATGCCTATGAGGGAGAGAATTTCAAGGTTTGTCAGTTTTTTTTGGAAATTCGGAAATTCAAAATGTTAAAAATTCCGAAATTCGATAAATTCAGAAATTCAGAAATTCAGAAATTAAAAAATTCCGAAATTCAGAAACTCGGAAACTCGGAAATTCTGAAACTCTGAAATTCAGAAATGCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAAATCAGAAATTCTAAAAATTAGAAATTCAGAAATTCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTATATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAGCTACTCGACTGGAATCAAAATTCAGCCGGAAAGTGTGAAAATCCACGTTTTGGATTATGGATTCGAATACGATAATGATGGTTTTGCACTTGAAATTCAAATGGTGGTGAAATAATTTTTTTGAAAACATTTTTTTTTTTTTAAATTTCCTGTAATTTTTAATTTATAACATTTTTTTCAAAAATAAAACACTTTATTAATTCAAAAAGTTCAAAAAATCACAAAAAAGTTTTTTGAGATTTTTTCGAATTTCGAGCATTTTCTGGAAACTTCGAAATTGAAGACATCGGCTTTCTGGAGTCCTTGGAATCGGAATTTTTGGATTTTTGAGTTTTTTGAAAGCA</canonical>
            <polymorphic>ATTTTGGATGTTTCCCATAGAGATCATGAGCATTCAAAACGACTGGCAGTGGCAAATTTTGGCGCCAATTTGAATTTTTCGAAAAATGAGGGGATGTATGTTTTCTATTGATGCTGATCTGGTTAGATATGCCTATGAGGGAGAGAATTTCAAGGTTTGTCAGTTTTTTTTGGAAATTCGGAAATTCAAAATGTTAAAAATTCCGAAATTCGATAAATTCAGAAATTCAGAAATTCAGAAATTAAAAAATTCCGAAATTCAGAAACTCGGAAACTCGGAAATTCTGAAACTCTGAAATTCAGAAATGCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAAATCAGAAATTCTAAAAATTAGAAATTCAGAAATTCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTATATYTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAGCTACTCGACTGGAATCAAAATTCAGCCGGAAAGTGTGAAAATCCACGTTTTGGATTATGGATTCGAATACGATAATGATGGTTTTGCACTTGAAATTCAAATGGTGGTGAAATAATTTTTTTGAAAACATTTTTTTTTTTTTAAATTTCCTGTAATTTTTAATTTATAACATTTTTTTCAAAAATAAAACACTTTATTAATTCAAAAAGTTCAAAAAATCACAAAAAAGTTTTTTGAGATTTTTTCGAATTTCGAGCATTTTCTGGAAACTTCGAAATTGAAGACATCGGCTTTCTGGAGTCCTTGGAATCGGAATTTTTGGATTTTTGAGTTTTTTGAAAGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>350 299 112 49 40 32 32 32 25 10 10 9</canonical_bands>
                <polymorphic_bands>350 299 121 49 40 32 32 32 25 10 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAGAATTTCAAGGTTTGTCA</pcr_primer_p1>
		<pcr_primer_p2>CTTAAACCAGTGCCAATCTG</pcr_primer_p2>
		<pcr_amplicon_size>516</pcr_amplicon_size>
		<canonical_amplicon>GAGAGAATTTCAAGGTTTGTCAGTTTTTTTTGGAAATTCGGAAATTCAAAATGTTAAAAATTCCGAAATTCGATAAATTCAGAAATTCAGAAATTCAGAAATTAAAAAATTCCGAAATTCAGAAACTCGGAAACTCGGAAATTCTGAAACTCTGAAATTCAGAAATGCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAAATCAGAAATTCTAAAAATTAGAAATTCAGAAATTCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTATATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAG</canonical_amplicon>
		<polymorphic_amplicon>GAGAGAATTTCAAGGTTTGTCAGTTTTTTTTGGAAATTCGGAAATTCAAAATGTTAAAAATTCCGAAATTCGATAAATTCAGAAATTCAGAAATTCAGAAATTAAAAAATTCCGAAATTCAGAAACTCGGAAACTCGGAAATTCTGAAACTCTGAAATTCAGAAATGCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAAATCAGAAATTCTAAAAATTAGAAATTCAGAAATTCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTATATYTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29163</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>28722</contig_pos>
        <strand></strand>
        <context>tttttawaty[T/C]tgaaattcta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTATATC</left_flank>
        <right_flank>TGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGGATGTTTCCCATAGAGATCATGAGCATTCAAAACGACTGGCAGTGGCAAATTTTGGCGCCAATTTGAATTTTTCGAAAAATGAGGGGATGTATGTTTTCTATTGATGCTGATCTGGTTAGATATGCCTATGAGGGAGAGAATTTCAAGGTTTGTCAGTTTTTTTTGGAAATTCGGAAATTCAAAATGTTAAAAATTCCGAAATTCGATAAATTCAGAAATTCAGAAATTCAGAAATTAAAAAATTCCGAAATTCAGAAACTCGGAAACTCGGAAATTCTGAAACTCTGAAATTCAGAAATGCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAAATCAGAAATTCTAAAAATTAGAAATTCAGAAATTCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTATATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAGCTACTCGACTGGAATCAAAATTCAGCCGGAAAGTGTGAAAATCCACGTTTTGGATTATGGATTCGAATACGATAATGATGGTTTTGCACTTGAAATTCAAATGGTGGTGAAATAATTTTTTTGAAAACATTTTTTTTTTTTTAAATTTCCTGTAATTTTTAATTTATAACATTTTTTTCAAAAATAAAACACTTTATTAATTCAAAAAGTTCAAAAAATCACAAAAAAGTTTTTTGAGATTTTTTCGAATTTCGAGCATTTTCTGGAAACTTCGAAATTGAAGACATCGGCTTTCTGGAGTCCTTGGAATCGGAATTTTTGGATTTTTGAGTTTTTTGAAAGCAT</canonical>
            <polymorphic>TTTTGGATGTTTCCCATAGAGATCATGAGCATTCAAAACGACTGGCAGTGGCAAATTTTGGCGCCAATTTGAATTTTTCGAAAAATGAGGGGATGTATGTTTTCTATTGATGCTGATCTGGTTAGATATGCCTATGAGGGAGAGAATTTCAAGGTTTGTCAGTTTTTTTTGGAAATTCGGAAATTCAAAATGTTAAAAATTCCGAAATTCGATAAATTCAGAAATTCAGAAATTCAGAAATTAAAAAATTCCGAAATTCAGAAACTCGGAAACTCGGAAATTCTGAAACTCTGAAATTCAGAAATGCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAAATCAGAAATTCTAAAAATTAGAAATTCAGAAATTCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTATATCYTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAGCTACTCGACTGGAATCAAAATTCAGCCGGAAAGTGTGAAAATCCACGTTTTGGATTATGGATTCGAATACGATAATGATGGTTTTGCACTTGAAATTCAAATGGTGGTGAAATAATTTTTTTGAAAACATTTTTTTTTTTTTAAATTTCCTGTAATTTTTAATTTATAACATTTTTTTCAAAAATAAAACACTTTATTAATTCAAAAAGTTCAAAAAATCACAAAAAAGTTTTTTGAGATTTTTTCGAATTTCGAGCATTTTCTGGAAACTTCGAAATTGAAGACATCGGCTTTCTGGAGTCCTTGGAATCGGAATTTTTGGATTTTTGAGTTTTTTGAAAGCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAGAATTTCAAGGTTTGTCA</pcr_primer_p1>
		<pcr_primer_p2>CTTAAACCAGTGCCAATCTG</pcr_primer_p2>
		<pcr_amplicon_size>516</pcr_amplicon_size>
		<canonical_amplicon>GAGAGAATTTCAAGGTTTGTCAGTTTTTTTTGGAAATTCGGAAATTCAAAATGTTAAAAATTCCGAAATTCGATAAATTCAGAAATTCAGAAATTCAGAAATTAAAAAATTCCGAAATTCAGAAACTCGGAAACTCGGAAATTCTGAAACTCTGAAATTCAGAAATGCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAAATCAGAAATTCTAAAAATTAGAAATTCAGAAATTCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTATATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAG</canonical_amplicon>
		<polymorphic_amplicon>GAGAGAATTTCAAGGTTTGTCAGTTTTTTTTGGAAATTCGGAAATTCAAAATGTTAAAAATTCCGAAATTCGATAAATTCAGAAATTCAGAAATTCAGAAATTAAAAAATTCCGAAATTCAGAAACTCGGAAACTCGGAAATTCTGAAACTCTGAAATTCAGAAATGCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAAATCAGAAATTCTAAAAATTAGAAATTCAGAAATTCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTATATCYTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29164</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>28757</contig_pos>
        <strand></strand>
        <context>acttcagaaa[A/T]ctctactraa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATTTTTTTATATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAA</left_flank>
        <right_flank>CTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACGACTGGCAGTGGCAAATTTTGGCGCCAATTTGAATTTTTCGAAAAATGAGGGGATGTATGTTTTCTATTGATGCTGATCTGGTTAGATATGCCTATGAGGGAGAGAATTTCAAGGTTTGTCAGTTTTTTTTGGAAATTCGGAAATTCAAAATGTTAAAAATTCCGAAATTCGATAAATTCAGAAATTCAGAAATTCAGAAATTAAAAAATTCCGAAATTCAGAAACTCGGAAACTCGGAAATTCTGAAACTCTGAAATTCAGAAATGCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAAATCAGAAATTCTAAAAATTAGAAATTCAGAAATTCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTATATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAGCTACTCGACTGGAATCAAAATTCAGCCGGAAAGTGTGAAAATCCACGTTTTGGATTATGGATTCGAATACGATAATGATGGTTTTGCACTTGAAATTCAAATGGTGGTGAAATAATTTTTTTGAAAACATTTTTTTTTTTTTAAATTTCCTGTAATTTTTAATTTATAACATTTTTTTCAAAAATAAAACACTTTATTAATTCAAAAAGTTCAAAAAATCACAAAAAAGTTTTTTGAGATTTTTTCGAATTTCGAGCATTTTCTGGAAACTTCGAAATTGAAGACATCGGCTTTCTGGAGTCCTTGGAATCGGAATTTTTGGATTTTTGAGTTTTTTGAAAGCATTTGTACAGATTGATGGCTTCGTCGTGGTGCATTTT</canonical>
            <polymorphic>AAACGACTGGCAGTGGCAAATTTTGGCGCCAATTTGAATTTTTCGAAAAATGAGGGGATGTATGTTTTCTATTGATGCTGATCTGGTTAGATATGCCTATGAGGGAGAGAATTTCAAGGTTTGTCAGTTTTTTTTGGAAATTCGGAAATTCAAAATGTTAAAAATTCCGAAATTCGATAAATTCAGAAATTCAGAAATTCAGAAATTAAAAAATTCCGAAATTCAGAAACTCGGAAACTCGGAAATTCTGAAACTCTGAAATTCAGAAATGCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAAATCAGAAATTCTAAAAATTAGAAATTCAGAAATTCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTATATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAWCTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAGCTACTCGACTGGAATCAAAATTCAGCCGGAAAGTGTGAAAATCCACGTTTTGGATTATGGATTCGAATACGATAATGATGGTTTTGCACTTGAAATTCAAATGGTGGTGAAATAATTTTTTTGAAAACATTTTTTTTTTTTTAAATTTCCTGTAATTTTTAATTTATAACATTTTTTTCAAAAATAAAACACTTTATTAATTCAAAAAGTTCAAAAAATCACAAAAAAGTTTTTTGAGATTTTTTCGAATTTCGAGCATTTTCTGGAAACTTCGAAATTGAAGACATCGGCTTTCTGGAGTCCTTGGAATCGGAATTTTTGGATTTTTGAGTTTTTTGAAAGCATTTGTACAGATTGATGGCTTCGTCGTGGTGCATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAGAATTTCAAGGTTTGTCA</pcr_primer_p1>
		<pcr_primer_p2>CTTAAACCAGTGCCAATCTG</pcr_primer_p2>
		<pcr_amplicon_size>516</pcr_amplicon_size>
		<canonical_amplicon>GAGAGAATTTCAAGGTTTGTCAGTTTTTTTTGGAAATTCGGAAATTCAAAATGTTAAAAATTCCGAAATTCGATAAATTCAGAAATTCAGAAATTCAGAAATTAAAAAATTCCGAAATTCAGAAACTCGGAAACTCGGAAATTCTGAAACTCTGAAATTCAGAAATGCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAAATCAGAAATTCTAAAAATTAGAAATTCAGAAATTCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTATATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAG</canonical_amplicon>
		<polymorphic_amplicon>GAGAGAATTTCAAGGTTTGTCAGTTTTTTTTGGAAATTCGGAAATTCAAAATGTTAAAAATTCCGAAATTCGATAAATTCAGAAATTCAGAAATTCAGAAATTAAAAAATTCCGAAATTCAGAAACTCGGAAACTCGGAAATTCTGAAACTCTGAAATTCAGAAATGCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAAATCAGAAATTCTAAAAATTAGAAATTCAGAAATTCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTATATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAWCTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29165</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>28765</contig_pos>
        <strand></strand>
        <context>aawctctact[G/A]aatttcagaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTATATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACT</left_flank>
        <right_flank>AATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCAGTGGCAAATTTTGGCGCCAATTTGAATTTTTCGAAAAATGAGGGGATGTATGTTTTCTATTGATGCTGATCTGGTTAGATATGCCTATGAGGGAGAGAATTTCAAGGTTTGTCAGTTTTTTTTGGAAATTCGGAAATTCAAAATGTTAAAAATTCCGAAATTCGATAAATTCAGAAATTCAGAAATTCAGAAATTAAAAAATTCCGAAATTCAGAAACTCGGAAACTCGGAAATTCTGAAACTCTGAAATTCAGAAATGCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAAATCAGAAATTCTAAAAATTAGAAATTCAGAAATTCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTATATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAGCTACTCGACTGGAATCAAAATTCAGCCGGAAAGTGTGAAAATCCACGTTTTGGATTATGGATTCGAATACGATAATGATGGTTTTGCACTTGAAATTCAAATGGTGGTGAAATAATTTTTTTGAAAACATTTTTTTTTTTTTAAATTTCCTGTAATTTTTAATTTATAACATTTTTTTCAAAAATAAAACACTTTATTAATTCAAAAAGTTCAAAAAATCACAAAAAAGTTTTTTGAGATTTTTTCGAATTTCGAGCATTTTCTGGAAACTTCGAAATTGAAGACATCGGCTTTCTGGAGTCCTTGGAATCGGAATTTTTGGATTTTTGAGTTTTTTGAAAGCATTTGTACAGATTGATGGCTTCGTCGTGGTGCATTTTGGTGGACT</canonical>
            <polymorphic>GGCAGTGGCAAATTTTGGCGCCAATTTGAATTTTTCGAAAAATGAGGGGATGTATGTTTTCTATTGATGCTGATCTGGTTAGATATGCCTATGAGGGAGAGAATTTCAAGGTTTGTCAGTTTTTTTTGGAAATTCGGAAATTCAAAATGTTAAAAATTCCGAAATTCGATAAATTCAGAAATTCAGAAATTCAGAAATTAAAAAATTCCGAAATTCAGAAACTCGGAAACTCGGAAATTCTGAAACTCTGAAATTCAGAAATGCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAAATCAGAAATTCTAAAAATTAGAAATTCAGAAATTCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTATATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTRAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAGCTACTCGACTGGAATCAAAATTCAGCCGGAAAGTGTGAAAATCCACGTTTTGGATTATGGATTCGAATACGATAATGATGGTTTTGCACTTGAAATTCAAATGGTGGTGAAATAATTTTTTTGAAAACATTTTTTTTTTTTTAAATTTCCTGTAATTTTTAATTTATAACATTTTTTTCAAAAATAAAACACTTTATTAATTCAAAAAGTTCAAAAAATCACAAAAAAGTTTTTTGAGATTTTTTCGAATTTCGAGCATTTTCTGGAAACTTCGAAATTGAAGACATCGGCTTTCTGGAGTCCTTGGAATCGGAATTTTTGGATTTTTGAGTTTTTTGAAAGCATTTGTACAGATTGATGGCTTCGTCGTGGTGCATTTTGGTGGACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>104 75 75 73 66 50 44 31 30 30 29 24 24 21 18 18 16 16 16 16 16 16 10 10 10 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>104 75 75 73 66 60 50 44 31 29 24 24 21 18 18 16 16 16 16 16 16 10 10 10 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAGAATTTCAAGGTTTGTCA</pcr_primer_p1>
		<pcr_primer_p2>CTTAAACCAGTGCCAATCTG</pcr_primer_p2>
		<pcr_amplicon_size>516</pcr_amplicon_size>
		<canonical_amplicon>GAGAGAATTTCAAGGTTTGTCAGTTTTTTTTGGAAATTCGGAAATTCAAAATGTTAAAAATTCCGAAATTCGATAAATTCAGAAATTCAGAAATTCAGAAATTAAAAAATTCCGAAATTCAGAAACTCGGAAACTCGGAAATTCTGAAACTCTGAAATTCAGAAATGCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAAATCAGAAATTCTAAAAATTAGAAATTCAGAAATTCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTATATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAG</canonical_amplicon>
		<polymorphic_amplicon>GAGAGAATTTCAAGGTTTGTCAGTTTTTTTTGGAAATTCGGAAATTCAAAATGTTAAAAATTCCGAAATTCGATAAATTCAGAAATTCAGAAATTCAGAAATTAAAAAATTCCGAAATTCAGAAACTCGGAAACTCGGAAATTCTGAAACTCTGAAATTCAGAAATGCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAAATCAGAAATTCTAAAAATTAGAAATTCAGAAATTCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTATATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTRAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29166</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>28803</contig_pos>
        <strand></strand>
        <context>gaaaatttca[G/A]araattccag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCA</left_flank>
        <right_flank>AGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATGAGGGGATGTATGTTTTCTATTGATGCTGATCTGGTTAGATATGCCTATGAGGGAGAGAATTTCAAGGTTTGTCAGTTTTTTTTGGAAATTCGGAAATTCAAAATGTTAAAAATTCCGAAATTCGATAAATTCAGAAATTCAGAAATTCAGAAATTAAAAAATTCCGAAATTCAGAAACTCGGAAACTCGGAAATTCTGAAACTCTGAAATTCAGAAATGCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAAATCAGAAATTCTAAAAATTAGAAATTCAGAAATTCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTATATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAGCTACTCGACTGGAATCAAAATTCAGCCGGAAAGTGTGAAAATCCACGTTTTGGATTATGGATTCGAATACGATAATGATGGTTTTGCACTTGAAATTCAAATGGTGGTGAAATAATTTTTTTGAAAACATTTTTTTTTTTTTAAATTTCCTGTAATTTTTAATTTATAACATTTTTTTCAAAAATAAAACACTTTATTAATTCAAAAAGTTCAAAAAATCACAAAAAAGTTTTTTGAGATTTTTTCGAATTTCGAGCATTTTCTGGAAACTTCGAAATTGAAGACATCGGCTTTCTGGAGTCCTTGGAATCGGAATTTTTGGATTTTTGAGTTTTTTGAAAGCATTTGTACAGATTGATGGCTTCGTCGTGGTGCATTTTGGTGGACTGGACTTGGATCTTTGGGGAAAACCTGGAAAATGGAATT</canonical>
            <polymorphic>AAAATGAGGGGATGTATGTTTTCTATTGATGCTGATCTGGTTAGATATGCCTATGAGGGAGAGAATTTCAAGGTTTGTCAGTTTTTTTTGGAAATTCGGAAATTCAAAATGTTAAAAATTCCGAAATTCGATAAATTCAGAAATTCAGAAATTCAGAAATTAAAAAATTCCGAAATTCAGAAACTCGGAAACTCGGAAATTCTGAAACTCTGAAATTCAGAAATGCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAAATCAGAAATTCTAAAAATTAGAAATTCAGAAATTCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTATATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCARAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAGCTACTCGACTGGAATCAAAATTCAGCCGGAAAGTGTGAAAATCCACGTTTTGGATTATGGATTCGAATACGATAATGATGGTTTTGCACTTGAAATTCAAATGGTGGTGAAATAATTTTTTTGAAAACATTTTTTTTTTTTTAAATTTCCTGTAATTTTTAATTTATAACATTTTTTTCAAAAATAAAACACTTTATTAATTCAAAAAGTTCAAAAAATCACAAAAAAGTTTTTTGAGATTTTTTCGAATTTCGAGCATTTTCTGGAAACTTCGAAATTGAAGACATCGGCTTTCTGGAGTCCTTGGAATCGGAATTTTTGGATTTTTGAGTTTTTTGAAAGCATTTGTACAGATTGATGGCTTCGTCGTGGTGCATTTTGGTGGACTGGACTTGGATCTTTGGGGAAAACCTGGAAAATGGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>330 114 98 78 57 30 24 24 24 20 17 16 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>330 114 98 87 78 24 24 24 20 17 16 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAGAATTTCAAGGTTTGTCA</pcr_primer_p1>
		<pcr_primer_p2>CTTAAACCAGTGCCAATCTG</pcr_primer_p2>
		<pcr_amplicon_size>516</pcr_amplicon_size>
		<canonical_amplicon>GAGAGAATTTCAAGGTTTGTCAGTTTTTTTTGGAAATTCGGAAATTCAAAATGTTAAAAATTCCGAAATTCGATAAATTCAGAAATTCAGAAATTCAGAAATTAAAAAATTCCGAAATTCAGAAACTCGGAAACTCGGAAATTCTGAAACTCTGAAATTCAGAAATGCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAAATCAGAAATTCTAAAAATTAGAAATTCAGAAATTCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTATATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAG</canonical_amplicon>
		<polymorphic_amplicon>GAGAGAATTTCAAGGTTTGTCAGTTTTTTTTGGAAATTCGGAAATTCAAAATGTTAAAAATTCCGAAATTCGATAAATTCAGAAATTCAGAAATTCAGAAATTAAAAAATTCCGAAATTCAGAAACTCGGAAACTCGGAAATTCTGAAACTCTGAAATTCAGAAATGCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAAATCAGAAATTCTAAAAATTAGAAATTCAGAAATTCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTATATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCARAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29167</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>28805</contig_pos>
        <strand></strand>
        <context>aaatttcara[G/A]aattccagTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGA</left_flank>
        <right_flank>AATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGAGGGGATGTATGTTTTCTATTGATGCTGATCTGGTTAGATATGCCTATGAGGGAGAGAATTTCAAGGTTTGTCAGTTTTTTTTGGAAATTCGGAAATTCAAAATGTTAAAAATTCCGAAATTCGATAAATTCAGAAATTCAGAAATTCAGAAATTAAAAAATTCCGAAATTCAGAAACTCGGAAACTCGGAAATTCTGAAACTCTGAAATTCAGAAATGCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAAATCAGAAATTCTAAAAATTAGAAATTCAGAAATTCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTATATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAGCTACTCGACTGGAATCAAAATTCAGCCGGAAAGTGTGAAAATCCACGTTTTGGATTATGGATTCGAATACGATAATGATGGTTTTGCACTTGAAATTCAAATGGTGGTGAAATAATTTTTTTGAAAACATTTTTTTTTTTTTAAATTTCCTGTAATTTTTAATTTATAACATTTTTTTCAAAAATAAAACACTTTATTAATTCAAAAAGTTCAAAAAATCACAAAAAAGTTTTTTGAGATTTTTTCGAATTTCGAGCATTTTCTGGAAACTTCGAAATTGAAGACATCGGCTTTCTGGAGTCCTTGGAATCGGAATTTTTGGATTTTTGAGTTTTTTGAAAGCATTTGTACAGATTGATGGCTTCGTCGTGGTGCATTTTGGTGGACTGGACTTGGATCTTTGGGGAAAACCTGGAAAATGGAATTTT</canonical>
            <polymorphic>AATGAGGGGATGTATGTTTTCTATTGATGCTGATCTGGTTAGATATGCCTATGAGGGAGAGAATTTCAAGGTTTGTCAGTTTTTTTTGGAAATTCGGAAATTCAAAATGTTAAAAATTCCGAAATTCGATAAATTCAGAAATTCAGAAATTCAGAAATTAAAAAATTCCGAAATTCAGAAACTCGGAAACTCGGAAATTCTGAAACTCTGAAATTCAGAAATGCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAAATCAGAAATTCTAAAAATTAGAAATTCAGAAATTCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTATATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGARAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAGCTACTCGACTGGAATCAAAATTCAGCCGGAAAGTGTGAAAATCCACGTTTTGGATTATGGATTCGAATACGATAATGATGGTTTTGCACTTGAAATTCAAATGGTGGTGAAATAATTTTTTTGAAAACATTTTTTTTTTTTTAAATTTCCTGTAATTTTTAATTTATAACATTTTTTTCAAAAATAAAACACTTTATTAATTCAAAAAGTTCAAAAAATCACAAAAAAGTTTTTTGAGATTTTTTCGAATTTCGAGCATTTTCTGGAAACTTCGAAATTGAAGACATCGGCTTTCTGGAGTCCTTGGAATCGGAATTTTTGGATTTTTGAGTTTTTTGAAAGCATTTGTACAGATTGATGGCTTCGTCGTGGTGCATTTTGGTGGACTGGACTTGGATCTTTGGGGAAAACCTGGAAAATGGAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>109 104 75 66 61 50 44 31 30 30 29 24 24 21 18 16 16 16 16 16 16 10 10 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6</canonical_bands>
                <polymorphic_bands>109 104 75 66 61 50 44 31 31 30 30 29 24 24 18 16 16 16 16 16 16 10 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>500 243 193 32 32</canonical_bands>
                <polymorphic_bands>693 243 32 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAGAATTTCAAGGTTTGTCA</pcr_primer_p1>
		<pcr_primer_p2>CTTAAACCAGTGCCAATCTG</pcr_primer_p2>
		<pcr_amplicon_size>516</pcr_amplicon_size>
		<canonical_amplicon>GAGAGAATTTCAAGGTTTGTCAGTTTTTTTTGGAAATTCGGAAATTCAAAATGTTAAAAATTCCGAAATTCGATAAATTCAGAAATTCAGAAATTCAGAAATTAAAAAATTCCGAAATTCAGAAACTCGGAAACTCGGAAATTCTGAAACTCTGAAATTCAGAAATGCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAAATCAGAAATTCTAAAAATTAGAAATTCAGAAATTCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTATATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAG</canonical_amplicon>
		<polymorphic_amplicon>GAGAGAATTTCAAGGTTTGTCAGTTTTTTTTGGAAATTCGGAAATTCAAAATGTTAAAAATTCCGAAATTCGATAAATTCAGAAATTCAGAAATTCAGAAATTAAAAAATTCCGAAATTCAGAAACTCGGAAACTCGGAAATTCTGAAACTCTGAAATTCAGAAATGCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAATTCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAAATCAGAAATTCTAAAAATTAGAAATTCAGAAATTCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTATATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGARAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29168</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>29087</contig_pos>
        <strand></strand>
        <context>ATTCAAAAAG[T/C]TCAAAAAATC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAATTTATAACATTTTTTTCAAAAATAAAACACTTTATTAATTCAAAAAG</left_flank>
        <right_flank>TCAAAAAATCACAAAAAAGTTTTTTGAGATTTTTTCGAATTTCGAGCATT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAAATCAGAAATTCTAAAAATTAGAAATTCAGAAATTCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTATATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAGCTACTCGACTGGAATCAAAATTCAGCCGGAAAGTGTGAAAATCCACGTTTTGGATTATGGATTCGAATACGATAATGATGGTTTTGCACTTGAAATTCAAATGGTGGTGAAATAATTTTTTTGAAAACATTTTTTTTTTTTTAAATTTCCTGTAATTTTTAATTTATAACATTTTTTTCAAAAATAAAACACTTTATTAATTCAAAAAGTTCAAAAAATCACAAAAAAGTTTTTTGAGATTTTTTCGAATTTCGAGCATTTTCTGGAAACTTCGAAATTGAAGACATCGGCTTTCTGGAGTCCTTGGAATCGGAATTTTTGGATTTTTGAGTTTTTTGAAAGCATTTGTACAGATTGATGGCTTCGTCGTGGTGCATTTTGGTGGACTGGACTTGGATCTTTGGGGAAAACCTGGAAAATGGAATTTTTAAAAAATAAAACAAATCAATTTCAGAGAATTTTTGAGTTTAAAATTATAAAAAAAGTTCTTCTTTTTATGCCAAAAATATTCACAGGTTTTTTTCAACGAAATAATTTCCAGTTTATTTTTTCAGACTTTATCACTGATAACATTTTAATTTTTGGAGTTTCGTCAGAATTTGACACCTTCTTGAGATTAGGAGAATTTCATCATCTGAAGACAAAACATAATAATAATAAACTTTAGAAGTTTCTTAAAGGAGGCGAGACAGCAAAAATTTCGAGGGACA</canonical>
            <polymorphic>AAATTCAGAAATTCAGAAATTCAGGAATTCAGAAATTCAGAAATTGAGAAAATCAGAAATTCTAAAAATTAGAAATTCAGAAATTCAGAAATTCTAAAAATTAGAAATACAGATATTCGAAATTTTTTTATATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAGCTACTCGACTGGAATCAAAATTCAGCCGGAAAGTGTGAAAATCCACGTTTTGGATTATGGATTCGAATACGATAATGATGGTTTTGCACTTGAAATTCAAATGGTGGTGAAATAATTTTTTTGAAAACATTTTTTTTTTTTTAAATTTCCTGTAATTTTTAATTTATAACATTTTTTTCAAAAATAAAACACTTTATTAATTCAAAAAGYTCAAAAAATCACAAAAAAGTTTTTTGAGATTTTTTCGAATTTCGAGCATTTTCTGGAAACTTCGAAATTGAAGACATCGGCTTTCTGGAGTCCTTGGAATCGGAATTTTTGGATTTTTGAGTTTTTTGAAAGCATTTGTACAGATTGATGGCTTCGTCGTGGTGCATTTTGGTGGACTGGACTTGGATCTTTGGGGAAAACCTGGAAAATGGAATTTTTAAAAAATAAAACAAATCAATTTCAGAGAATTTTTGAGTTTAAAATTATAAAAAAAGTTCTTCTTTTTATGCCAAAAATATTCACAGGTTTTTTTCAACGAAATAATTTCCAGTTTATTTTTTCAGACTTTATCACTGATAACATTTTAATTTTTGGAGTTTCGTCAGAATTTGACACCTTCTTGAGATTAGGAGAATTTCATCATCTGAAGACAAAACATAATAATAATAAACTTTAGAAGTTTCTTAAAGGAGGCGAGACAGCAAAAATTTCGAGGGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGGTTTTGCACTTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATTCCATTTTCCAGGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>349</pcr_amplicon_size>
		<canonical_amplicon>GATGGTTTTGCACTTGAAATTCAAATGGTGGTGAAATAATTTTTTTGAAAACATTTTTTTTTTTTTAAATTTCCTGTAATTTTTAATTTATAACATTTTTTTCAAAAATAAAACACTTTATTAATTCAAAAAGTTCAAAAAATCACAAAAAAGTTTTTTGAGATTTTTTCGAATTTCGAGCATTTTCTGGAAACTTCGAAATTGAAGACATCGGCTTTCTGGAGTCCTTGGAATCGGAATTTTTGGATTTTTGAGTTTTTTGAAAGCATTTGTACAGATTGATGGCTTCGTCGTGGTGCATTTTGGTGGACTGGACTTGGATCTTTGGGGAAAACCTGGAAAATGGAAT</canonical_amplicon>
		<polymorphic_amplicon>GATGGTTTTGCACTTGAAATTCAAATGGTGGTGAAATAATTTTTTTGAAAACATTTTTTTTTTTTTAAATTTCCTGTAATTTTTAATTTATAACATTTTTTTCAAAAATAAAACACTTTATTAATTCAAAAAGYTCAAAAAATCACAAAAAAGTTTTTTGAGATTTTTTCGAATTTCGAGCATTTTCTGGAAACTTCGAAATTGAAGACATCGGCTTTCTGGAGTCCTTGGAATCGGAATTTTTGGATTTTTGAGTTTTTTGAAAGCATTTGTACAGATTGATGGCTTCGTCGTGGTGCATTTTGGTGGACTGGACTTGGATCTTTGGGGAAAACCTGGAAAATGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29169</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>29181</contig_pos>
        <strand></strand>
        <context>TCTGGAGTCC[T/G]TGGAATCGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GAGCATTTTCTGGAAACTTCGAAATTGAAGACATCGGCTTTCTGGAGTCC</left_flank>
        <right_flank>TGGAATCGGAATTTTTGGATTTTTGAGTTTTTTGAAAGCATTTGTACAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAAATTAGAAATACAGATATTCGAAATTTTTTTATATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAGCTACTCGACTGGAATCAAAATTCAGCCGGAAAGTGTGAAAATCCACGTTTTGGATTATGGATTCGAATACGATAATGATGGTTTTGCACTTGAAATTCAAATGGTGGTGAAATAATTTTTTTGAAAACATTTTTTTTTTTTTAAATTTCCTGTAATTTTTAATTTATAACATTTTTTTCAAAAATAAAACACTTTATTAATTCAAAAAGTTCAAAAAATCACAAAAAAGTTTTTTGAGATTTTTTCGAATTTCGAGCATTTTCTGGAAACTTCGAAATTGAAGACATCGGCTTTCTGGAGTCCTTGGAATCGGAATTTTTGGATTTTTGAGTTTTTTGAAAGCATTTGTACAGATTGATGGCTTCGTCGTGGTGCATTTTGGTGGACTGGACTTGGATCTTTGGGGAAAACCTGGAAAATGGAATTTTTAAAAAATAAAACAAATCAATTTCAGAGAATTTTTGAGTTTAAAATTATAAAAAAAGTTCTTCTTTTTATGCCAAAAATATTCACAGGTTTTTTTCAACGAAATAATTTCCAGTTTATTTTTTCAGACTTTATCACTGATAACATTTTAATTTTTGGAGTTTCGTCAGAATTTGACACCTTCTTGAGATTAGGAGAATTTCATCATCTGAAGACAAAACATAATAATAATAAACTTTAGAAGTTTCTTAAAGGAGGCGAGACAGCAAAAATTTCGAGGGACAGTTCGGGGGACGAAATCGCACTGCGCTTATGTAGGTCATCGGTCGGCAGGCGCCTTCGCGCCCCCGTAGCTCAACCGGTAGCGGCGCTGAACCC</canonical>
            <polymorphic>TAAAAATTAGAAATACAGATATTCGAAATTTTTTTATATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAGCTACTCGACTGGAATCAAAATTCAGCCGGAAAGTGTGAAAATCCACGTTTTGGATTATGGATTCGAATACGATAATGATGGTTTTGCACTTGAAATTCAAATGGTGGTGAAATAATTTTTTTGAAAACATTTTTTTTTTTTTAAATTTCCTGTAATTTTTAATTTATAACATTTTTTTCAAAAATAAAACACTTTATTAATTCAAAAAGTTCAAAAAATCACAAAAAAGTTTTTTGAGATTTTTTCGAATTTCGAGCATTTTCTGGAAACTTCGAAATTGAAGACATCGGCTTTCTGGAGTCCKTGGAATCGGAATTTTTGGATTTTTGAGTTTTTTGAAAGCATTTGTACAGATTGATGGCTTCGTCGTGGTGCATTTTGGTGGACTGGACTTGGATCTTTGGGGAAAACCTGGAAAATGGAATTTTTAAAAAATAAAACAAATCAATTTCAGAGAATTTTTGAGTTTAAAATTATAAAAAAAGTTCTTCTTTTTATGCCAAAAATATTCACAGGTTTTTTTCAACGAAATAATTTCCAGTTTATTTTTTCAGACTTTATCACTGATAACATTTTAATTTTTGGAGTTTCGTCAGAATTTGACACCTTCTTGAGATTAGGAGAATTTCATCATCTGAAGACAAAACATAATAATAATAAACTTTAGAAGTTTCTTAAAGGAGGCGAGACAGCAAAAATTTCGAGGGACAGTTCGGGGGACGAAATCGCACTGCGCTTATGTAGGTCATCGGTCGGCAGGCGCCTTCGCGCCCCCGTAGCTCAACCGGTAGCGGCGCTGAACCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATGGTTTTGCACTTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATTCCATTTTCCAGGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>349</pcr_amplicon_size>
		<canonical_amplicon>GATGGTTTTGCACTTGAAATTCAAATGGTGGTGAAATAATTTTTTTGAAAACATTTTTTTTTTTTTAAATTTCCTGTAATTTTTAATTTATAACATTTTTTTCAAAAATAAAACACTTTATTAATTCAAAAAGTTCAAAAAATCACAAAAAAGTTTTTTGAGATTTTTTCGAATTTCGAGCATTTTCTGGAAACTTCGAAATTGAAGACATCGGCTTTCTGGAGTCCTTGGAATCGGAATTTTTGGATTTTTGAGTTTTTTGAAAGCATTTGTACAGATTGATGGCTTCGTCGTGGTGCATTTTGGTGGACTGGACTTGGATCTTTGGGGAAAACCTGGAAAATGGAAT</canonical_amplicon>
		<polymorphic_amplicon>GATGGTTTTGCACTTGAAATTCAAATGGTGGTGAAATAATTTTTTTGAAAACATTTTTTTTTTTTTAAATTTCCTGTAATTTTTAATTTATAACATTTTTTTCAAAAATAAAACACTTTATTAATTCAAAAAGTTCAAAAAATCACAAAAAAGTTTTTTGAGATTTTTTCGAATTTCGAGCATTTTCTGGAAACTTCGAAATTGAAGACATCGGCTTTCTGGAGTCCKTGGAATCGGAATTTTTGGATTTTTGAGTTTTTTGAAAGCATTTGTACAGATTGATGGCTTCGTCGTGGTGCATTTTGGTGGACTGGACTTGGATCTTTGGGGAAAACCTGGAAAATGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29170</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>29211</contig_pos>
        <strand></strand>
        <context>TTTTTGAGTT[T/C]TTTGAAAGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACATCGGCTTTCTGGAGTCCTTGGAATCGGAATTTTTGGATTTTTGAGTT</left_flank>
        <right_flank>TTTGAAAGCATTTGTACAGATTGATGGCTTCGTCGTGGTGCATTTTGGTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTATATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAGCTACTCGACTGGAATCAAAATTCAGCCGGAAAGTGTGAAAATCCACGTTTTGGATTATGGATTCGAATACGATAATGATGGTTTTGCACTTGAAATTCAAATGGTGGTGAAATAATTTTTTTGAAAACATTTTTTTTTTTTTAAATTTCCTGTAATTTTTAATTTATAACATTTTTTTCAAAAATAAAACACTTTATTAATTCAAAAAGTTCAAAAAATCACAAAAAAGTTTTTTGAGATTTTTTCGAATTTCGAGCATTTTCTGGAAACTTCGAAATTGAAGACATCGGCTTTCTGGAGTCCTTGGAATCGGAATTTTTGGATTTTTGAGTTTTTTGAAAGCATTTGTACAGATTGATGGCTTCGTCGTGGTGCATTTTGGTGGACTGGACTTGGATCTTTGGGGAAAACCTGGAAAATGGAATTTTTAAAAAATAAAACAAATCAATTTCAGAGAATTTTTGAGTTTAAAATTATAAAAAAAGTTCTTCTTTTTATGCCAAAAATATTCACAGGTTTTTTTCAACGAAATAATTTCCAGTTTATTTTTTCAGACTTTATCACTGATAACATTTTAATTTTTGGAGTTTCGTCAGAATTTGACACCTTCTTGAGATTAGGAGAATTTCATCATCTGAAGACAAAACATAATAATAATAAACTTTAGAAGTTTCTTAAAGGAGGCGAGACAGCAAAAATTTCGAGGGACAGTTCGGGGGACGAAATCGCACTGCGCTTATGTAGGTCATCGGTCGGCAGGCGCCTTCGCGCCCCCGTAGCTCAACCGGTAGCGGCGCTGAACCCCTGAGCTGCCTGCCATAAGTTCAACCCCTC</canonical>
            <polymorphic>TTTTTATATCTTGAAATTCTAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAGCTACTCGACTGGAATCAAAATTCAGCCGGAAAGTGTGAAAATCCACGTTTTGGATTATGGATTCGAATACGATAATGATGGTTTTGCACTTGAAATTCAAATGGTGGTGAAATAATTTTTTTGAAAACATTTTTTTTTTTTTAAATTTCCTGTAATTTTTAATTTATAACATTTTTTTCAAAAATAAAACACTTTATTAATTCAAAAAGTTCAAAAAATCACAAAAAAGTTTTTTGAGATTTTTTCGAATTTCGAGCATTTTCTGGAAACTTCGAAATTGAAGACATCGGCTTTCTGGAGTCCTTGGAATCGGAATTTTTGGATTTTTGAGTTYTTTGAAAGCATTTGTACAGATTGATGGCTTCGTCGTGGTGCATTTTGGTGGACTGGACTTGGATCTTTGGGGAAAACCTGGAAAATGGAATTTTTAAAAAATAAAACAAATCAATTTCAGAGAATTTTTGAGTTTAAAATTATAAAAAAAGTTCTTCTTTTTATGCCAAAAATATTCACAGGTTTTTTTCAACGAAATAATTTCCAGTTTATTTTTTCAGACTTTATCACTGATAACATTTTAATTTTTGGAGTTTCGTCAGAATTTGACACCTTCTTGAGATTAGGAGAATTTCATCATCTGAAGACAAAACATAATAATAATAAACTTTAGAAGTTTCTTAAAGGAGGCGAGACAGCAAAAATTTCGAGGGACAGTTCGGGGGACGAAATCGCACTGCGCTTATGTAGGTCATCGGTCGGCAGGCGCCTTCGCGCCCCCGTAGCTCAACCGGTAGCGGCGCTGAACCCCTGAGCTGCCTGCCATAAGTTCAACCCCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACTTCGAAATTGAAGACAT</pcr_primer_p1>
		<pcr_primer_p2>TATTTTTGGCATAAAAAGAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GAAACTTCGAAATTGAAGACATCGGCTTTCTGGAGTCCTTGGAATCGGAATTTTTGGATTTTTGAGTTTTTTGAAAGCATTTGTACAGATTGATGGCTTCGTCGTGGTGCATTTTGGTGGACTGGACTTGGATCTTTGGGGAAAACCTGGAAAATGGAATTTTTAAAAAATAAAACAAATCAATTTCAGAGAATTTTTGAGTTTAAAATTATAAAAAAAGTTCTTCTTTTTATGCCAAAAATA</canonical_amplicon>
		<polymorphic_amplicon>GAAACTTCGAAATTGAAGACATCGGCTTTCTGGAGTCCTTGGAATCGGAATTTTTGGATTTTTGAGTTYTTTGAAAGCATTTGTACAGATTGATGGCTTCGTCGTGGTGCATTTTGGTGGACTGGACTTGGATCTTTGGGGAAAACCTGGAAAATGGAATTTTTAAAAAATAAAACAAATCAATTTCAGAGAATTTTTGAGTTTAAAATTATAAAAAAAGTTCTTCTTTTTATGCCAAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29171</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>29230</contig_pos>
        <strand></strand>
        <context>CATTTGTACA[G/C]ATTGATGGCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CTTGGAATCGGAATTTTTGGATTTTTGAGTTTTTTGAAAGCATTTGTACA</left_flank>
        <right_flank>ATTGATGGCTTCGTCGTGGTGCATTTTGGTGGACTGGACTTGGATCTTTG</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAGCTACTCGACTGGAATCAAAATTCAGCCGGAAAGTGTGAAAATCCACGTTTTGGATTATGGATTCGAATACGATAATGATGGTTTTGCACTTGAAATTCAAATGGTGGTGAAATAATTTTTTTGAAAACATTTTTTTTTTTTTAAATTTCCTGTAATTTTTAATTTATAACATTTTTTTCAAAAATAAAACACTTTATTAATTCAAAAAGTTCAAAAAATCACAAAAAAGTTTTTTGAGATTTTTTCGAATTTCGAGCATTTTCTGGAAACTTCGAAATTGAAGACATCGGCTTTCTGGAGTCCTTGGAATCGGAATTTTTGGATTTTTGAGTTTTTTGAAAGCATTTGTACAGATTGATGGCTTCGTCGTGGTGCATTTTGGTGGACTGGACTTGGATCTTTGGGGAAAACCTGGAAAATGGAATTTTTAAAAAATAAAACAAATCAATTTCAGAGAATTTTTGAGTTTAAAATTATAAAAAAAGTTCTTCTTTTTATGCCAAAAATATTCACAGGTTTTTTTCAACGAAATAATTTCCAGTTTATTTTTTCAGACTTTATCACTGATAACATTTTAATTTTTGGAGTTTCGTCAGAATTTGACACCTTCTTGAGATTAGGAGAATTTCATCATCTGAAGACAAAACATAATAATAATAAACTTTAGAAGTTTCTTAAAGGAGGCGAGACAGCAAAAATTTCGAGGGACAGTTCGGGGGACGAAATCGCACTGCGCTTATGTAGGTCATCGGTCGGCAGGCGCCTTCGCGCCCCCGTAGCTCAACCGGTAGCGGCGCTGAACCCCTGAGCTGCCTGCCATAAGTTCAACCCCTCATGGGGGTTCTCTATGCAA</canonical>
            <polymorphic>TAGAAAATTCCAGAAAACTTCAGAAAACTCTACTGAATTTCAGAAACGTCTAGAAATGTCTAGAAAATTTCAGAGAATTCCAGTATTCAAGCTGAAAATTCAAAAAATTCAAAAATTCGAAAATTTTCAGATTGGCACTGGTTTAAGCTACTCGACTGGAATCAAAATTCAGCCGGAAAGTGTGAAAATCCACGTTTTGGATTATGGATTCGAATACGATAATGATGGTTTTGCACTTGAAATTCAAATGGTGGTGAAATAATTTTTTTGAAAACATTTTTTTTTTTTTAAATTTCCTGTAATTTTTAATTTATAACATTTTTTTCAAAAATAAAACACTTTATTAATTCAAAAAGTTCAAAAAATCACAAAAAAGTTTTTTGAGATTTTTTCGAATTTCGAGCATTTTCTGGAAACTTCGAAATTGAAGACATCGGCTTTCTGGAGTCCTTGGAATCGGAATTTTTGGATTTTTGAGTTTTTTGAAAGCATTTGTACASATTGATGGCTTCGTCGTGGTGCATTTTGGTGGACTGGACTTGGATCTTTGGGGAAAACCTGGAAAATGGAATTTTTAAAAAATAAAACAAATCAATTTCAGAGAATTTTTGAGTTTAAAATTATAAAAAAAGTTCTTCTTTTTATGCCAAAAATATTCACAGGTTTTTTTCAACGAAATAATTTCCAGTTTATTTTTTCAGACTTTATCACTGATAACATTTTAATTTTTGGAGTTTCGTCAGAATTTGACACCTTCTTGAGATTAGGAGAATTTCATCATCTGAAGACAAAACATAATAATAATAAACTTTAGAAGTTTCTTAAAGGAGGCGAGACAGCAAAAATTTCGAGGGACAGTTCGGGGGACGAAATCGCACTGCGCTTATGTAGGTCATCGGTCGGCAGGCGCCTTCGCGCCCCCGTAGCTCAACCGGTAGCGGCGCTGAACCCCTGAGCTGCCTGCCATAAGTTCAACCCCTCATGGGGGTTCTCTATGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACTTCGAAATTGAAGACAT</pcr_primer_p1>
		<pcr_primer_p2>TATTTTTGGCATAAAAAGAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GAAACTTCGAAATTGAAGACATCGGCTTTCTGGAGTCCTTGGAATCGGAATTTTTGGATTTTTGAGTTTTTTGAAAGCATTTGTACAGATTGATGGCTTCGTCGTGGTGCATTTTGGTGGACTGGACTTGGATCTTTGGGGAAAACCTGGAAAATGGAATTTTTAAAAAATAAAACAAATCAATTTCAGAGAATTTTTGAGTTTAAAATTATAAAAAAAGTTCTTCTTTTTATGCCAAAAATA</canonical_amplicon>
		<polymorphic_amplicon>GAAACTTCGAAATTGAAGACATCGGCTTTCTGGAGTCCTTGGAATCGGAATTTTTGGATTTTTGAGTTTTTTGAAAGCATTTGTACASATTGATGGCTTCGTCGTGGTGCATTTTGGTGGACTGGACTTGGATCTTTGGGGAAAACCTGGAAAATGGAATTTTTAAAAAATAAAACAAATCAATTTCAGAGAATTTTTGAGTTTAAAATTATAAAAAAAGTTCTTCTTTTTATGCCAAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29172</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>32120</contig_pos>
        <strand>+</strand>
        <context>TTTTTTAAAA[G/T]TAATTCTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACCGATAGTCGATTTAGAAATTTTATTAGTGAGAGGTAATTTTTTAAAA</left_flank>
        <right_flank>TAATTCTTTTTTTGAAATACTGTTTTAAATCTACTGAAAACCCCTATGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGCTATACAAAAAGTACCGTAACTTGGTCAATTTTCGCTCAAACTCAAATATTCTTATACTTTTGGAATTACCAAACTAAGACGTTCAAAATAAGTATAAACACGGCTAGGTTTAAATACATTTGATTTTTTGGAAATTTTCGTGGTGAGACCCTAATAGTGTAAAACTACCGTAACTCAGCGATTTTTGAACTAAATTGAAAAATCCTTCCTGATTCAAGTTTTACTTGTTTAGACCTTCAAAATGAGTATAACCACGACTAGGTTTGGAAACTTTGATTTTTTCAAATTTTCAAAAAATCCCAAAAAAAAAATTTTCAGTATCACCGACGAGGAGTATGGAGATCGTGCTGGATGTGGTACATGGGCAAAATATGGCATTTTTACTGCAAATATCGTTTTTATGGTTGTCGGTGGACTATTATTGGCCATGGGAATATGGCTGAGAACCGATAGTCGATTTAGAAATTTTATTAGTGAGAGGTAATTTTTTAAAATTAATTCTTTTTTTGAAATACTGTTTTAAATCTACTGAAAACCCCTATGAAATTGGTTTTGAATAGATCATTTGAACTCTGAAAAAACTAGAAAATTCAGAAAATTTTTTTTCGAAATTACCCGTAAACCCTGTATTAGAAGGGCCCCCCTGTAATAGATGGGCACCCGTTATAGAAAGGTTTACTGTAACTTATTTTTTTTTCAAACTAAAAAAAATTCAGATACCGTCAAGCTGTGGAAAATGCATTTTGGGAAGCGCCAACACTTTTTGCATTCTCCTACATTATCATTGTGATGGGCGCAGTTATGATAGTGGTGGCAATGTTGGGTAGGTACAGTAATCCAAAATCATTTTGAAATGTTGTATTTTAAATTTCTTTGAAATACTCAAAAATGTGCAAATTTTGATTTATCTAAAGTTTTTAAAAGATTTTTTCAAAAAGCGCCATTCAAACCGTCAACTTTGAGCCAATTTATCTCATTTGCTGTAAGAGATATTG</canonical>
            <polymorphic>AATGCTATACAAAAAGTACCGTAACTTGGTCAATTTTCGCTCAAACTCAAATATTCTTATACTTTTGGAATTACCAAACTAAGACGTTCAAAATAAGTATAAACACGGCTAGGTTTAAATACATTTGATTTTTTGGAAATTTTCGTGGTGAGACCCTAATAGTGTAAAACTACCGTAACTCAGCGATTTTTGAACTAAATTGAAAAATCCTTCCTGATTCAAGTTTTACTTGTTTAGACCTTCAAAATGAGTATAACCACGACTAGGTTTGGAAACTTTGATTTTTTCAAATTTTCAAAAAATCCCAAAAAAAAAATTTTCAGTATCACCGACGAGGAGTATGGAGATCGTGCTGGATGTGGTACATGGGCAAAATATGGCATTTTTACTGCAAATATCGTTTTTATGGTTGTCGGTGGACTATTATTGGCCATGGGAATATGGCTGAGAACCGATAGTCGATTTAGAAATTTTATTAGTGAGAGGTAATTTTTTAAAAKTAATTCTTTTTTTGAAATACTGTTTTAAATCTACTGAAAACCCCTATGAAATTGGTTTTGAATAGATCATTTGAACTCTGAAAAAACTAGAAAATTCAGAAAATTTTTTTTCGAAATTACCCGTAAACCCTGTATTAGAAGGGCCCCCCTGTAATAGATGGGCACCCGTTATAGAAAGGTTTACTGTAACTTATTTTTTTTTCAAACTAAAAAAAATTCAGATACCGTCAAGCTGTGGAAAATGCATTTTGGGAAGCGCCAACACTTTTTGCATTCTCCTACATTATCATTGTGATGGGCGCAGTTATGATAGTGGTGGCAATGTTGGGTAGGTACAGTAATCCAAAATCATTTTGAAATGTTGTATTTTAAATTTCTTTGAAATACTCAAAAATGTGCAAATTTTGATTTATCTAAAGTTTTTAAAAGATTTTTTCAAAAAGCGCCATTCAAACCGTCAACTTTGAGCCAATTTATCTCATTTGCTGTAAGAGATATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>379 344 115 77 54 25 6</canonical_bands>
                <polymorphic_bands>379 344 115 77 54 31</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>157 154 100 92 70 69 60 48 43 37 31 30 29 25 19 13 10 9 4</canonical_bands>
                <polymorphic_bands>157 154 100 92 70 69 60 48 43 37 31 30 29 25 19 14 13 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACTGCAAATATCGTTTTTATGG</pcr_primer_p1>
		<pcr_primer_p2>ATACAGGGTTTACGGGTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TACTGCAAATATCGTTTTTATGGTTGTCGGTGGACTATTATTGGCCATGGGAATATGGCTGAGAACCGATAGTCGATTTAGAAATTTTATTAGTGAGAGGTAATTTTTTAAAATTAATTCTTTTTTTGAAATACTGTTTTAAATCTACTGAAAACCCCTATGAAATTGGTTTTGAATAGATCATTTGAACTCTGAAAAAACTAGAAAATTCAGAAAATTTTTTTTCGAAATTACCCGTAAACCCTGTAT</canonical_amplicon>
		<polymorphic_amplicon>TACTGCAAATATCGTTTTTATGGTTGTCGGTGGACTATTATTGGCCATGGGAATATGGCTGAGAACCGATAGTCGATTTAGAAATTTTATTAGTGAGAGGTAATTTTTTAAAAKTAATTCTTTTTTTGAAATACTGTTTTAAATCTACTGAAAACCCCTATGAAATTGGTTTTGAATAGATCATTTGAACTCTGAAAAAACTAGAAAATTCAGAAAATTTTTTTTCGAAATTACCCGTAAACCCTGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29173</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>32570</contig_pos>
        <strand></strand>
        <context>AAAGCGCCAT[T/C]CAaaccgtca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAATTTTGATTTATCTAAAGTTTTTAAAAGATTTTTTCAAAAAGCGCCAT</left_flank>
        <right_flank>CAAACCGTCAACTTTGAGCCAATTTATCTCATTTGCTGTAAGAGATATTG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCGATAGTCGATTTAGAAATTTTATTAGTGAGAGGTAATTTTTTAAAATTAATTCTTTTTTTGAAATACTGTTTTAAATCTACTGAAAACCCCTATGAAATTGGTTTTGAATAGATCATTTGAACTCTGAAAAAACTAGAAAATTCAGAAAATTTTTTTTCGAAATTACCCGTAAACCCTGTATTAGAAGGGCCCCCCTGTAATAGATGGGCACCCGTTATAGAAAGGTTTACTGTAACTTATTTTTTTTTCAAACTAAAAAAAATTCAGATACCGTCAAGCTGTGGAAAATGCATTTTGGGAAGCGCCAACACTTTTTGCATTCTCCTACATTATCATTGTGATGGGCGCAGTTATGATAGTGGTGGCAATGTTGGGTAGGTACAGTAATCCAAAATCATTTTGAAATGTTGTATTTTAAATTTCTTTGAAATACTCAAAAATGTGCAAATTTTGATTTATCTAAAGTTTTTAAAAGATTTTTTCAAAAAGCGCCATTCAAACCGTCAACTTTGAGCCAATTTATCTCATTTGCTGTAAGAGATATTGAAAAGTGATCTACTGATAAATTGTTTATCATAATATCCTATACATTTTATCAGTTGACACATTTTTGATATTTCTTATAGGAGCTGAGATATTTGAGCTCAAACTCTTGACAGTGTACGGAGAATTTTAACTATTCAGGATGCTGTGGAATTACTGGAAGGTCTCGTTTATTCTTAGTCATTTATTCGATGGTCGTTTTTTTGCTTTTTGTGGCGACATTAAGCTGTGGAATTTATTTGTTGTATAAAAAAGATGGGGTAGGTATTTTAATTTTCCAAATTTGACCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGTTCCGAATTCCGGATTCCGGATTCCAAAAAAACTGAAAATTCCAAAAAATCATAACTTTCTCAATTTTTAATATTTTCTGGTTGTCCTGAG</canonical>
            <polymorphic>ACCGATAGTCGATTTAGAAATTTTATTAGTGAGAGGTAATTTTTTAAAATTAATTCTTTTTTTGAAATACTGTTTTAAATCTACTGAAAACCCCTATGAAATTGGTTTTGAATAGATCATTTGAACTCTGAAAAAACTAGAAAATTCAGAAAATTTTTTTTCGAAATTACCCGTAAACCCTGTATTAGAAGGGCCCCCCTGTAATAGATGGGCACCCGTTATAGAAAGGTTTACTGTAACTTATTTTTTTTTCAAACTAAAAAAAATTCAGATACCGTCAAGCTGTGGAAAATGCATTTTGGGAAGCGCCAACACTTTTTGCATTCTCCTACATTATCATTGTGATGGGCGCAGTTATGATAGTGGTGGCAATGTTGGGTAGGTACAGTAATCCAAAATCATTTTGAAATGTTGTATTTTAAATTTCTTTGAAATACTCAAAAATGTGCAAATTTTGATTTATCTAAAGTTTTTAAAAGATTTTTTCAAAAAGCGCCATYCAAACCGTCAACTTTGAGCCAATTTATCTCATTTGCTGTAAGAGATATTGAAAAGTGATCTACTGATAAATTGTTTATCATAATATCCTATACATTTTATCAGTTGACACATTTTTGATATTTCTTATAGGAGCTGAGATATTTGAGCTCAAACTCTTGACAGTGTACGGAGAATTTTAACTATTCAGGATGCTGTGGAATTACTGGAAGGTCTCGTTTATTCTTAGTCATTTATTCGATGGTCGTTTTTTTGCTTTTTGTGGCGACATTAAGCTGTGGAATTTATTTGTTGTATAAAAAAGATGGGGTAGGTATTTTAATTTTCCAAATTTGACCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGTTCCGAATTCCGGATTCCGGATTCCAAAAAAACTGAAAATTCCAAAAAATCATAACTTTCTCAATTTTTAATATTTTCTGGTTGTCCTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTGCAAATTTTGATTTATCT</pcr_primer_p1>
		<pcr_primer_p2>CCACAGCATCCTGAATAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AATGTGCAAATTTTGATTTATCTAAAGTTTTTAAAAGATTTTTTCAAAAAGCGCCATTCAAACCGTCAACTTTGAGCCAATTTATCTCATTTGCTGTAAGAGATATTGAAAAGTGATCTACTGATAAATTGTTTATCATAATATCCTATACATTTTATCAGTTGACACATTTTTGATATTTCTTATAGGAGCTGAGATATTTGAGCTCAAACTCTTGACAGTGTACGGAGAATTTTAACTATTCAGGATGCTGTGG</canonical_amplicon>
		<polymorphic_amplicon>AATGTGCAAATTTTGATTTATCTAAAGTTTTTAAAAGATTTTTTCAAAAAGCGCCATYCAAACCGTCAACTTTGAGCCAATTTATCTCATTTGCTGTAAGAGATATTGAAAAGTGATCTACTGATAAATTGTTTATCATAATATCCTATACATTTTATCAGTTGACACATTTTTGATATTTCTTATAGGAGCTGAGATATTTGAGCTCAAACTCTTGACAGTGTACGGAGAATTTTAACTATTCAGGATGCTGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29174</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>32601</contig_pos>
        <strand></strand>
        <context>aatttatctc[A/G]kttgctgtaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTCAAAAAGCGCCATTCAAACCGTCAACTTTGAGCCAATTTATCTC</left_flank>
        <right_flank>TTTGCTGTAAGAGATATTGAAAAGTGATCTACTGATAAATTGTTTATCAT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGGTAATTTTTTAAAATTAATTCTTTTTTTGAAATACTGTTTTAAATCTACTGAAAACCCCTATGAAATTGGTTTTGAATAGATCATTTGAACTCTGAAAAAACTAGAAAATTCAGAAAATTTTTTTTCGAAATTACCCGTAAACCCTGTATTAGAAGGGCCCCCCTGTAATAGATGGGCACCCGTTATAGAAAGGTTTACTGTAACTTATTTTTTTTTCAAACTAAAAAAAATTCAGATACCGTCAAGCTGTGGAAAATGCATTTTGGGAAGCGCCAACACTTTTTGCATTCTCCTACATTATCATTGTGATGGGCGCAGTTATGATAGTGGTGGCAATGTTGGGTAGGTACAGTAATCCAAAATCATTTTGAAATGTTGTATTTTAAATTTCTTTGAAATACTCAAAAATGTGCAAATTTTGATTTATCTAAAGTTTTTAAAAGATTTTTTCAAAAAGCGCCATTCAAACCGTCAACTTTGAGCCAATTTATCTCATTTGCTGTAAGAGATATTGAAAAGTGATCTACTGATAAATTGTTTATCATAATATCCTATACATTTTATCAGTTGACACATTTTTGATATTTCTTATAGGAGCTGAGATATTTGAGCTCAAACTCTTGACAGTGTACGGAGAATTTTAACTATTCAGGATGCTGTGGAATTACTGGAAGGTCTCGTTTATTCTTAGTCATTTATTCGATGGTCGTTTTTTTGCTTTTTGTGGCGACATTAAGCTGTGGAATTTATTTGTTGTATAAAAAAGATGGGGTAGGTATTTTAATTTTCCAAATTTGACCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGTTCCGAATTCCGGATTCCGGATTCCAAAAAAACTGAAAATTCCAAAAAATCATAACTTTCTCAATTTTTAATATTTTCTGGTTGTCCTGAGTAGAGTAGAGAGCCAGGATTTTGGGTCCCTG</canonical>
            <polymorphic>AGAGGTAATTTTTTAAAATTAATTCTTTTTTTGAAATACTGTTTTAAATCTACTGAAAACCCCTATGAAATTGGTTTTGAATAGATCATTTGAACTCTGAAAAAACTAGAAAATTCAGAAAATTTTTTTTCGAAATTACCCGTAAACCCTGTATTAGAAGGGCCCCCCTGTAATAGATGGGCACCCGTTATAGAAAGGTTTACTGTAACTTATTTTTTTTTCAAACTAAAAAAAATTCAGATACCGTCAAGCTGTGGAAAATGCATTTTGGGAAGCGCCAACACTTTTTGCATTCTCCTACATTATCATTGTGATGGGCGCAGTTATGATAGTGGTGGCAATGTTGGGTAGGTACAGTAATCCAAAATCATTTTGAAATGTTGTATTTTAAATTTCTTTGAAATACTCAAAAATGTGCAAATTTTGATTTATCTAAAGTTTTTAAAAGATTTTTTCAAAAAGCGCCATTCAAACCGTCAACTTTGAGCCAATTTATCTCRTTTGCTGTAAGAGATATTGAAAAGTGATCTACTGATAAATTGTTTATCATAATATCCTATACATTTTATCAGTTGACACATTTTTGATATTTCTTATAGGAGCTGAGATATTTGAGCTCAAACTCTTGACAGTGTACGGAGAATTTTAACTATTCAGGATGCTGTGGAATTACTGGAAGGTCTCGTTTATTCTTAGTCATTTATTCGATGGTCGTTTTTTTGCTTTTTGTGGCGACATTAAGCTGTGGAATTTATTTGTTGTATAAAAAAGATGGGGTAGGTATTTTAATTTTCCAAATTTGACCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGTTCCGAATTCCGGATTCCGGATTCCAAAAAAACTGAAAATTCCAAAAAATCATAACTTTCTCAATTTTTAATATTTTCTGGTTGTCCTGAGTAGAGTAGAGAGCCAGGATTTTGGGTCCCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTGCAAATTTTGATTTATCT</pcr_primer_p1>
		<pcr_primer_p2>CCACAGCATCCTGAATAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AATGTGCAAATTTTGATTTATCTAAAGTTTTTAAAAGATTTTTTCAAAAAGCGCCATTCAAACCGTCAACTTTGAGCCAATTTATCTCATTTGCTGTAAGAGATATTGAAAAGTGATCTACTGATAAATTGTTTATCATAATATCCTATACATTTTATCAGTTGACACATTTTTGATATTTCTTATAGGAGCTGAGATATTTGAGCTCAAACTCTTGACAGTGTACGGAGAATTTTAACTATTCAGGATGCTGTGG</canonical_amplicon>
		<polymorphic_amplicon>AATGTGCAAATTTTGATTTATCTAAAGTTTTTAAAAGATTTTTTCAAAAAGCGCCATTCAAACCGTCAACTTTGAGCCAATTTATCTCRTTTGCTGTAAGAGATATTGAAAAGTGATCTACTGATAAATTGTTTATCATAATATCCTATACATTTTATCAGTTGACACATTTTTGATATTTCTTATAGGAGCTGAGATATTTGAGCTCAAACTCTTGACAGTGTACGGAGAATTTTAACTATTCAGGATGCTGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29175</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>32602</contig_pos>
        <strand></strand>
        <context>atttatctcr[T/G]ttgctgtaag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTTTTCAAAAAGCGCCATTCAAACCGTCAACTTTGAGCCAATTTATCTCA</left_flank>
        <right_flank>TTGCTGTAAGAGATATTGAAAAGTGATCTACTGATAAATTGTTTATCATA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGTAATTTTTTAAAATTAATTCTTTTTTTGAAATACTGTTTTAAATCTACTGAAAACCCCTATGAAATTGGTTTTGAATAGATCATTTGAACTCTGAAAAAACTAGAAAATTCAGAAAATTTTTTTTCGAAATTACCCGTAAACCCTGTATTAGAAGGGCCCCCCTGTAATAGATGGGCACCCGTTATAGAAAGGTTTACTGTAACTTATTTTTTTTTCAAACTAAAAAAAATTCAGATACCGTCAAGCTGTGGAAAATGCATTTTGGGAAGCGCCAACACTTTTTGCATTCTCCTACATTATCATTGTGATGGGCGCAGTTATGATAGTGGTGGCAATGTTGGGTAGGTACAGTAATCCAAAATCATTTTGAAATGTTGTATTTTAAATTTCTTTGAAATACTCAAAAATGTGCAAATTTTGATTTATCTAAAGTTTTTAAAAGATTTTTTCAAAAAGCGCCATTCAAACCGTCAACTTTGAGCCAATTTATCTCATTTGCTGTAAGAGATATTGAAAAGTGATCTACTGATAAATTGTTTATCATAATATCCTATACATTTTATCAGTTGACACATTTTTGATATTTCTTATAGGAGCTGAGATATTTGAGCTCAAACTCTTGACAGTGTACGGAGAATTTTAACTATTCAGGATGCTGTGGAATTACTGGAAGGTCTCGTTTATTCTTAGTCATTTATTCGATGGTCGTTTTTTTGCTTTTTGTGGCGACATTAAGCTGTGGAATTTATTTGTTGTATAAAAAAGATGGGGTAGGTATTTTAATTTTCCAAATTTGACCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGTTCCGAATTCCGGATTCCGGATTCCAAAAAAACTGAAAATTCCAAAAAATCATAACTTTCTCAATTTTTAATATTTTCTGGTTGTCCTGAGTAGAGTAGAGAGCCAGGATTTTGGGTCCCTGG</canonical>
            <polymorphic>GAGGTAATTTTTTAAAATTAATTCTTTTTTTGAAATACTGTTTTAAATCTACTGAAAACCCCTATGAAATTGGTTTTGAATAGATCATTTGAACTCTGAAAAAACTAGAAAATTCAGAAAATTTTTTTTCGAAATTACCCGTAAACCCTGTATTAGAAGGGCCCCCCTGTAATAGATGGGCACCCGTTATAGAAAGGTTTACTGTAACTTATTTTTTTTTCAAACTAAAAAAAATTCAGATACCGTCAAGCTGTGGAAAATGCATTTTGGGAAGCGCCAACACTTTTTGCATTCTCCTACATTATCATTGTGATGGGCGCAGTTATGATAGTGGTGGCAATGTTGGGTAGGTACAGTAATCCAAAATCATTTTGAAATGTTGTATTTTAAATTTCTTTGAAATACTCAAAAATGTGCAAATTTTGATTTATCTAAAGTTTTTAAAAGATTTTTTCAAAAAGCGCCATTCAAACCGTCAACTTTGAGCCAATTTATCTCAKTTGCTGTAAGAGATATTGAAAAGTGATCTACTGATAAATTGTTTATCATAATATCCTATACATTTTATCAGTTGACACATTTTTGATATTTCTTATAGGAGCTGAGATATTTGAGCTCAAACTCTTGACAGTGTACGGAGAATTTTAACTATTCAGGATGCTGTGGAATTACTGGAAGGTCTCGTTTATTCTTAGTCATTTATTCGATGGTCGTTTTTTTGCTTTTTGTGGCGACATTAAGCTGTGGAATTTATTTGTTGTATAAAAAAGATGGGGTAGGTATTTTAATTTTCCAAATTTGACCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGTTCCGAATTCCGGATTCCGGATTCCAAAAAAACTGAAAATTCCAAAAAATCATAACTTTCTCAATTTTTAATATTTTCTGGTTGTCCTGAGTAGAGTAGAGAGCCAGGATTTTGGGTCCCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTGCAAATTTTGATTTATCT</pcr_primer_p1>
		<pcr_primer_p2>CCACAGCATCCTGAATAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AATGTGCAAATTTTGATTTATCTAAAGTTTTTAAAAGATTTTTTCAAAAAGCGCCATTCAAACCGTCAACTTTGAGCCAATTTATCTCATTTGCTGTAAGAGATATTGAAAAGTGATCTACTGATAAATTGTTTATCATAATATCCTATACATTTTATCAGTTGACACATTTTTGATATTTCTTATAGGAGCTGAGATATTTGAGCTCAAACTCTTGACAGTGTACGGAGAATTTTAACTATTCAGGATGCTGTGG</canonical_amplicon>
		<polymorphic_amplicon>AATGTGCAAATTTTGATTTATCTAAAGTTTTTAAAAGATTTTTTCAAAAAGCGCCATTCAAACCGTCAACTTTGAGCCAATTTATCTCAKTTGCTGTAAGAGATATTGAAAAGTGATCTACTGATAAATTGTTTATCATAATATCCTATACATTTTATCAGTTGACACATTTTTGATATTTCTTATAGGAGCTGAGATATTTGAGCTCAAACTCTTGACAGTGTACGGAGAATTTTAACTATTCAGGATGCTGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29176</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>32619</contig_pos>
        <strand></strand>
        <context>taagagatat[T/A]raaaagtkrt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTCAAACCGTCAACTTTGAGCCAATTTATCTCATTTGCTGTAAGAGATAT</left_flank>
        <right_flank>GAAAAGTGATCTACTGATAAATTGTTTATCATAATATCCTATACATTTTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAATTCTTTTTTTGAAATACTGTTTTAAATCTACTGAAAACCCCTATGAAATTGGTTTTGAATAGATCATTTGAACTCTGAAAAAACTAGAAAATTCAGAAAATTTTTTTTCGAAATTACCCGTAAACCCTGTATTAGAAGGGCCCCCCTGTAATAGATGGGCACCCGTTATAGAAAGGTTTACTGTAACTTATTTTTTTTTCAAACTAAAAAAAATTCAGATACCGTCAAGCTGTGGAAAATGCATTTTGGGAAGCGCCAACACTTTTTGCATTCTCCTACATTATCATTGTGATGGGCGCAGTTATGATAGTGGTGGCAATGTTGGGTAGGTACAGTAATCCAAAATCATTTTGAAATGTTGTATTTTAAATTTCTTTGAAATACTCAAAAATGTGCAAATTTTGATTTATCTAAAGTTTTTAAAAGATTTTTTCAAAAAGCGCCATTCAAACCGTCAACTTTGAGCCAATTTATCTCATTTGCTGTAAGAGATATTGAAAAGTGATCTACTGATAAATTGTTTATCATAATATCCTATACATTTTATCAGTTGACACATTTTTGATATTTCTTATAGGAGCTGAGATATTTGAGCTCAAACTCTTGACAGTGTACGGAGAATTTTAACTATTCAGGATGCTGTGGAATTACTGGAAGGTCTCGTTTATTCTTAGTCATTTATTCGATGGTCGTTTTTTTGCTTTTTGTGGCGACATTAAGCTGTGGAATTTATTTGTTGTATAAAAAAGATGGGGTAGGTATTTTAATTTTCCAAATTTGACCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGTTCCGAATTCCGGATTCCGGATTCCAAAAAAACTGAAAATTCCAAAAAATCATAACTTTCTCAATTTTTAATATTTTCTGGTTGTCCTGAGTAGAGTAGAGAGCCAGGATTTTGGGTCCCTGGGTCCCTGGGTACATGGG</canonical>
            <polymorphic>TTAATTCTTTTTTTGAAATACTGTTTTAAATCTACTGAAAACCCCTATGAAATTGGTTTTGAATAGATCATTTGAACTCTGAAAAAACTAGAAAATTCAGAAAATTTTTTTTCGAAATTACCCGTAAACCCTGTATTAGAAGGGCCCCCCTGTAATAGATGGGCACCCGTTATAGAAAGGTTTACTGTAACTTATTTTTTTTTCAAACTAAAAAAAATTCAGATACCGTCAAGCTGTGGAAAATGCATTTTGGGAAGCGCCAACACTTTTTGCATTCTCCTACATTATCATTGTGATGGGCGCAGTTATGATAGTGGTGGCAATGTTGGGTAGGTACAGTAATCCAAAATCATTTTGAAATGTTGTATTTTAAATTTCTTTGAAATACTCAAAAATGTGCAAATTTTGATTTATCTAAAGTTTTTAAAAGATTTTTTCAAAAAGCGCCATTCAAACCGTCAACTTTGAGCCAATTTATCTCATTTGCTGTAAGAGATATWGAAAAGTGATCTACTGATAAATTGTTTATCATAATATCCTATACATTTTATCAGTTGACACATTTTTGATATTTCTTATAGGAGCTGAGATATTTGAGCTCAAACTCTTGACAGTGTACGGAGAATTTTAACTATTCAGGATGCTGTGGAATTACTGGAAGGTCTCGTTTATTCTTAGTCATTTATTCGATGGTCGTTTTTTTGCTTTTTGTGGCGACATTAAGCTGTGGAATTTATTTGTTGTATAAAAAAGATGGGGTAGGTATTTTAATTTTCCAAATTTGACCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGTTCCGAATTCCGGATTCCGGATTCCAAAAAAACTGAAAATTCCAAAAAATCATAACTTTCTCAATTTTTAATATTTTCTGGTTGTCCTGAGTAGAGTAGAGAGCCAGGATTTTGGGTCCCTGGGTCCCTGGGTACATGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTGCAAATTTTGATTTATCT</pcr_primer_p1>
		<pcr_primer_p2>CCACAGCATCCTGAATAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AATGTGCAAATTTTGATTTATCTAAAGTTTTTAAAAGATTTTTTCAAAAAGCGCCATTCAAACCGTCAACTTTGAGCCAATTTATCTCATTTGCTGTAAGAGATATTGAAAAGTGATCTACTGATAAATTGTTTATCATAATATCCTATACATTTTATCAGTTGACACATTTTTGATATTTCTTATAGGAGCTGAGATATTTGAGCTCAAACTCTTGACAGTGTACGGAGAATTTTAACTATTCAGGATGCTGTGG</canonical_amplicon>
		<polymorphic_amplicon>AATGTGCAAATTTTGATTTATCTAAAGTTTTTAAAAGATTTTTTCAAAAAGCGCCATTCAAACCGTCAACTTTGAGCCAATTTATCTCATTTGCTGTAAGAGATATWGAAAAGTGATCTACTGATAAATTGTTTATCATAATATCCTATACATTTTATCAGTTGACACATTTTTGATATTTCTTATAGGAGCTGAGATATTTGAGCTCAAACTCTTGACAGTGTACGGAGAATTTTAACTATTCAGGATGCTGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29177</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>32620</contig_pos>
        <strand></strand>
        <context>aagagatatw[G/A]aaaagtkrtc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCAAACCGTCAACTTTGAGCCAATTTATCTCATTTGCTGTAAGAGATATT</left_flank>
        <right_flank>AAAAGTGATCTACTGATAAATTGTTTATCATAATATCCTATACATTTTAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTCTTTTTTTGAAATACTGTTTTAAATCTACTGAAAACCCCTATGAAATTGGTTTTGAATAGATCATTTGAACTCTGAAAAAACTAGAAAATTCAGAAAATTTTTTTTCGAAATTACCCGTAAACCCTGTATTAGAAGGGCCCCCCTGTAATAGATGGGCACCCGTTATAGAAAGGTTTACTGTAACTTATTTTTTTTTCAAACTAAAAAAAATTCAGATACCGTCAAGCTGTGGAAAATGCATTTTGGGAAGCGCCAACACTTTTTGCATTCTCCTACATTATCATTGTGATGGGCGCAGTTATGATAGTGGTGGCAATGTTGGGTAGGTACAGTAATCCAAAATCATTTTGAAATGTTGTATTTTAAATTTCTTTGAAATACTCAAAAATGTGCAAATTTTGATTTATCTAAAGTTTTTAAAAGATTTTTTCAAAAAGCGCCATTCAAACCGTCAACTTTGAGCCAATTTATCTCATTTGCTGTAAGAGATATTGAAAAGTGATCTACTGATAAATTGTTTATCATAATATCCTATACATTTTATCAGTTGACACATTTTTGATATTTCTTATAGGAGCTGAGATATTTGAGCTCAAACTCTTGACAGTGTACGGAGAATTTTAACTATTCAGGATGCTGTGGAATTACTGGAAGGTCTCGTTTATTCTTAGTCATTTATTCGATGGTCGTTTTTTTGCTTTTTGTGGCGACATTAAGCTGTGGAATTTATTTGTTGTATAAAAAAGATGGGGTAGGTATTTTAATTTTCCAAATTTGACCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGTTCCGAATTCCGGATTCCGGATTCCAAAAAAACTGAAAATTCCAAAAAATCATAACTTTCTCAATTTTTAATATTTTCTGGTTGTCCTGAGTAGAGTAGAGAGCCAGGATTTTGGGTCCCTGGGTCCCTGGGTACATGGGT</canonical>
            <polymorphic>TAATTCTTTTTTTGAAATACTGTTTTAAATCTACTGAAAACCCCTATGAAATTGGTTTTGAATAGATCATTTGAACTCTGAAAAAACTAGAAAATTCAGAAAATTTTTTTTCGAAATTACCCGTAAACCCTGTATTAGAAGGGCCCCCCTGTAATAGATGGGCACCCGTTATAGAAAGGTTTACTGTAACTTATTTTTTTTTCAAACTAAAAAAAATTCAGATACCGTCAAGCTGTGGAAAATGCATTTTGGGAAGCGCCAACACTTTTTGCATTCTCCTACATTATCATTGTGATGGGCGCAGTTATGATAGTGGTGGCAATGTTGGGTAGGTACAGTAATCCAAAATCATTTTGAAATGTTGTATTTTAAATTTCTTTGAAATACTCAAAAATGTGCAAATTTTGATTTATCTAAAGTTTTTAAAAGATTTTTTCAAAAAGCGCCATTCAAACCGTCAACTTTGAGCCAATTTATCTCATTTGCTGTAAGAGATATTRAAAAGTGATCTACTGATAAATTGTTTATCATAATATCCTATACATTTTATCAGTTGACACATTTTTGATATTTCTTATAGGAGCTGAGATATTTGAGCTCAAACTCTTGACAGTGTACGGAGAATTTTAACTATTCAGGATGCTGTGGAATTACTGGAAGGTCTCGTTTATTCTTAGTCATTTATTCGATGGTCGTTTTTTTGCTTTTTGTGGCGACATTAAGCTGTGGAATTTATTTGTTGTATAAAAAAGATGGGGTAGGTATTTTAATTTTCCAAATTTGACCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGTTCCGAATTCCGGATTCCGGATTCCAAAAAAACTGAAAATTCCAAAAAATCATAACTTTCTCAATTTTTAATATTTTCTGGTTGTCCTGAGTAGAGTAGAGAGCCAGGATTTTGGGTCCCTGGGTCCCTGGGTACATGGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTGCAAATTTTGATTTATCT</pcr_primer_p1>
		<pcr_primer_p2>CCACAGCATCCTGAATAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AATGTGCAAATTTTGATTTATCTAAAGTTTTTAAAAGATTTTTTCAAAAAGCGCCATTCAAACCGTCAACTTTGAGCCAATTTATCTCATTTGCTGTAAGAGATATTGAAAAGTGATCTACTGATAAATTGTTTATCATAATATCCTATACATTTTATCAGTTGACACATTTTTGATATTTCTTATAGGAGCTGAGATATTTGAGCTCAAACTCTTGACAGTGTACGGAGAATTTTAACTATTCAGGATGCTGTGG</canonical_amplicon>
		<polymorphic_amplicon>AATGTGCAAATTTTGATTTATCTAAAGTTTTTAAAAGATTTTTTCAAAAAGCGCCATTCAAACCGTCAACTTTGAGCCAATTTATCTCATTTGCTGTAAGAGATATTRAAAAGTGATCTACTGATAAATTGTTTATCATAATATCCTATACATTTTATCAGTTGACACATTTTTGATATTTCTTATAGGAGCTGAGATATTTGAGCTCAAACTCTTGACAGTGTACGGAGAATTTTAACTATTCAGGATGCTGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29178</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>32627</contig_pos>
        <strand></strand>
        <context>atwraaaagt[G/T]rtctactgat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTCAACTTTGAGCCAATTTATCTCATTTGCTGTAAGAGATATTGAAAAGT</left_flank>
        <right_flank>ATCTACTGATAAATTGTTTATCATAATATCCTATACATTTTATCAGTTGA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTGAAATACTGTTTTAAATCTACTGAAAACCCCTATGAAATTGGTTTTGAATAGATCATTTGAACTCTGAAAAAACTAGAAAATTCAGAAAATTTTTTTTCGAAATTACCCGTAAACCCTGTATTAGAAGGGCCCCCCTGTAATAGATGGGCACCCGTTATAGAAAGGTTTACTGTAACTTATTTTTTTTTCAAACTAAAAAAAATTCAGATACCGTCAAGCTGTGGAAAATGCATTTTGGGAAGCGCCAACACTTTTTGCATTCTCCTACATTATCATTGTGATGGGCGCAGTTATGATAGTGGTGGCAATGTTGGGTAGGTACAGTAATCCAAAATCATTTTGAAATGTTGTATTTTAAATTTCTTTGAAATACTCAAAAATGTGCAAATTTTGATTTATCTAAAGTTTTTAAAAGATTTTTTCAAAAAGCGCCATTCAAACCGTCAACTTTGAGCCAATTTATCTCATTTGCTGTAAGAGATATTGAAAAGTGATCTACTGATAAATTGTTTATCATAATATCCTATACATTTTATCAGTTGACACATTTTTGATATTTCTTATAGGAGCTGAGATATTTGAGCTCAAACTCTTGACAGTGTACGGAGAATTTTAACTATTCAGGATGCTGTGGAATTACTGGAAGGTCTCGTTTATTCTTAGTCATTTATTCGATGGTCGTTTTTTTGCTTTTTGTGGCGACATTAAGCTGTGGAATTTATTTGTTGTATAAAAAAGATGGGGTAGGTATTTTAATTTTCCAAATTTGACCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGTTCCGAATTCCGGATTCCGGATTCCAAAAAAACTGAAAATTCCAAAAAATCATAACTTTCTCAATTTTTAATATTTTCTGGTTGTCCTGAGTAGAGTAGAGAGCCAGGATTTTGGGTCCCTGGGTCCCTGGGTACATGGGTACATTAA</canonical>
            <polymorphic>TTTTTTGAAATACTGTTTTAAATCTACTGAAAACCCCTATGAAATTGGTTTTGAATAGATCATTTGAACTCTGAAAAAACTAGAAAATTCAGAAAATTTTTTTTCGAAATTACCCGTAAACCCTGTATTAGAAGGGCCCCCCTGTAATAGATGGGCACCCGTTATAGAAAGGTTTACTGTAACTTATTTTTTTTTCAAACTAAAAAAAATTCAGATACCGTCAAGCTGTGGAAAATGCATTTTGGGAAGCGCCAACACTTTTTGCATTCTCCTACATTATCATTGTGATGGGCGCAGTTATGATAGTGGTGGCAATGTTGGGTAGGTACAGTAATCCAAAATCATTTTGAAATGTTGTATTTTAAATTTCTTTGAAATACTCAAAAATGTGCAAATTTTGATTTATCTAAAGTTTTTAAAAGATTTTTTCAAAAAGCGCCATTCAAACCGTCAACTTTGAGCCAATTTATCTCATTTGCTGTAAGAGATATTGAAAAGTKATCTACTGATAAATTGTTTATCATAATATCCTATACATTTTATCAGTTGACACATTTTTGATATTTCTTATAGGAGCTGAGATATTTGAGCTCAAACTCTTGACAGTGTACGGAGAATTTTAACTATTCAGGATGCTGTGGAATTACTGGAAGGTCTCGTTTATTCTTAGTCATTTATTCGATGGTCGTTTTTTTGCTTTTTGTGGCGACATTAAGCTGTGGAATTTATTTGTTGTATAAAAAAGATGGGGTAGGTATTTTAATTTTCCAAATTTGACCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGTTCCGAATTCCGGATTCCGGATTCCAAAAAAACTGAAAATTCCAAAAAATCATAACTTTCTCAATTTTTAATATTTTCTGGTTGTCCTGAGTAGAGTAGAGAGCCAGGATTTTGGGTCCCTGGGTCCCTGGGTACATGGGTACATTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>501 442 57</canonical_bands>
                <polymorphic_bands>943 57</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>279 157 109 80 73 65 56 52 32 30 27 21 16 3</canonical_bands>
                <polymorphic_bands>279 161 157 80 73 65 56 32 30 27 21 16 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGTGCAAATTTTGATTTATCT</pcr_primer_p1>
		<pcr_primer_p2>CCACAGCATCCTGAATAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AATGTGCAAATTTTGATTTATCTAAAGTTTTTAAAAGATTTTTTCAAAAAGCGCCATTCAAACCGTCAACTTTGAGCCAATTTATCTCATTTGCTGTAAGAGATATTGAAAAGTGATCTACTGATAAATTGTTTATCATAATATCCTATACATTTTATCAGTTGACACATTTTTGATATTTCTTATAGGAGCTGAGATATTTGAGCTCAAACTCTTGACAGTGTACGGAGAATTTTAACTATTCAGGATGCTGTGG</canonical_amplicon>
		<polymorphic_amplicon>AATGTGCAAATTTTGATTTATCTAAAGTTTTTAAAAGATTTTTTCAAAAAGCGCCATTCAAACCGTCAACTTTGAGCCAATTTATCTCATTTGCTGTAAGAGATATTGAAAAGTKATCTACTGATAAATTGTTTATCATAATATCCTATACATTTTATCAGTTGACACATTTTTGATATTTCTTATAGGAGCTGAGATATTTGAGCTCAAACTCTTGACAGTGTACGGAGAATTTTAACTATTCAGGATGCTGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29179</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>32628</contig_pos>
        <strand></strand>
        <context>twraaaagtk[A/G]tctactgata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAACTTTGAGCCAATTTATCTCATTTGCTGTAAGAGATATTGAAAAGTG</left_flank>
        <right_flank>TCTACTGATAAATTGTTTATCATAATATCCTATACATTTTATCAGTTGAC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTGAAATACTGTTTTAAATCTACTGAAAACCCCTATGAAATTGGTTTTGAATAGATCATTTGAACTCTGAAAAAACTAGAAAATTCAGAAAATTTTTTTTCGAAATTACCCGTAAACCCTGTATTAGAAGGGCCCCCCTGTAATAGATGGGCACCCGTTATAGAAAGGTTTACTGTAACTTATTTTTTTTTCAAACTAAAAAAAATTCAGATACCGTCAAGCTGTGGAAAATGCATTTTGGGAAGCGCCAACACTTTTTGCATTCTCCTACATTATCATTGTGATGGGCGCAGTTATGATAGTGGTGGCAATGTTGGGTAGGTACAGTAATCCAAAATCATTTTGAAATGTTGTATTTTAAATTTCTTTGAAATACTCAAAAATGTGCAAATTTTGATTTATCTAAAGTTTTTAAAAGATTTTTTCAAAAAGCGCCATTCAAACCGTCAACTTTGAGCCAATTTATCTCATTTGCTGTAAGAGATATTGAAAAGTGATCTACTGATAAATTGTTTATCATAATATCCTATACATTTTATCAGTTGACACATTTTTGATATTTCTTATAGGAGCTGAGATATTTGAGCTCAAACTCTTGACAGTGTACGGAGAATTTTAACTATTCAGGATGCTGTGGAATTACTGGAAGGTCTCGTTTATTCTTAGTCATTTATTCGATGGTCGTTTTTTTGCTTTTTGTGGCGACATTAAGCTGTGGAATTTATTTGTTGTATAAAAAAGATGGGGTAGGTATTTTAATTTTCCAAATTTGACCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGTTCCGAATTCCGGATTCCGGATTCCAAAAAAACTGAAAATTCCAAAAAATCATAACTTTCTCAATTTTTAATATTTTCTGGTTGTCCTGAGTAGAGTAGAGAGCCAGGATTTTGGGTCCCTGGGTCCCTGGGTACATGGGTACATTAAA</canonical>
            <polymorphic>TTTTTGAAATACTGTTTTAAATCTACTGAAAACCCCTATGAAATTGGTTTTGAATAGATCATTTGAACTCTGAAAAAACTAGAAAATTCAGAAAATTTTTTTTCGAAATTACCCGTAAACCCTGTATTAGAAGGGCCCCCCTGTAATAGATGGGCACCCGTTATAGAAAGGTTTACTGTAACTTATTTTTTTTTCAAACTAAAAAAAATTCAGATACCGTCAAGCTGTGGAAAATGCATTTTGGGAAGCGCCAACACTTTTTGCATTCTCCTACATTATCATTGTGATGGGCGCAGTTATGATAGTGGTGGCAATGTTGGGTAGGTACAGTAATCCAAAATCATTTTGAAATGTTGTATTTTAAATTTCTTTGAAATACTCAAAAATGTGCAAATTTTGATTTATCTAAAGTTTTTAAAAGATTTTTTCAAAAAGCGCCATTCAAACCGTCAACTTTGAGCCAATTTATCTCATTTGCTGTAAGAGATATTGAAAAGTGRTCTACTGATAAATTGTTTATCATAATATCCTATACATTTTATCAGTTGACACATTTTTGATATTTCTTATAGGAGCTGAGATATTTGAGCTCAAACTCTTGACAGTGTACGGAGAATTTTAACTATTCAGGATGCTGTGGAATTACTGGAAGGTCTCGTTTATTCTTAGTCATTTATTCGATGGTCGTTTTTTTGCTTTTTGTGGCGACATTAAGCTGTGGAATTTATTTGTTGTATAAAAAAGATGGGGTAGGTATTTTAATTTTCCAAATTTGACCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGTTCCGAATTCCGGATTCCGGATTCCAAAAAAACTGAAAATTCCAAAAAATCATAACTTTCTCAATTTTTAATATTTTCTGGTTGTCCTGAGTAGAGTAGAGAGCCAGGATTTTGGGTCCCTGGGTCCCTGGGTACATGGGTACATTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>502 442 56</canonical_bands>
                <polymorphic_bands>944 56</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGTGCAAATTTTGATTTATCT</pcr_primer_p1>
		<pcr_primer_p2>CCACAGCATCCTGAATAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AATGTGCAAATTTTGATTTATCTAAAGTTTTTAAAAGATTTTTTCAAAAAGCGCCATTCAAACCGTCAACTTTGAGCCAATTTATCTCATTTGCTGTAAGAGATATTGAAAAGTGATCTACTGATAAATTGTTTATCATAATATCCTATACATTTTATCAGTTGACACATTTTTGATATTTCTTATAGGAGCTGAGATATTTGAGCTCAAACTCTTGACAGTGTACGGAGAATTTTAACTATTCAGGATGCTGTGG</canonical_amplicon>
		<polymorphic_amplicon>AATGTGCAAATTTTGATTTATCTAAAGTTTTTAAAAGATTTTTTCAAAAAGCGCCATTCAAACCGTCAACTTTGAGCCAATTTATCTCATTTGCTGTAAGAGATATTGAAAAGTGRTCTACTGATAAATTGTTTATCATAATATCCTATACATTTTATCAGTTGACACATTTTTGATATTTCTTATAGGAGCTGAGATATTTGAGCTCAAACTCTTGACAGTGTACGGAGAATTTTAACTATTCAGGATGCTGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29180</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>105362</contig_pos>
        <strand></strand>
        <context>cggatagttt[T/C]ygttcaaact</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTT</left_flank>
        <right_flank>CGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTGGTGAATTGACCAAGCTGGAATTCAACATTGGCGTTCTCTTTAAACCTATTTGTCTTCTAGAAGCTCGTTGCTCATTCACATCCCACTGATAGCCGCCGGTTGATAGGCGGCTCACAAGCGGCTCACGGAAGTTTGGGCCAGAAGTCGCTGGAATCGCAGGAAAAGCACCCTGTAAATATGACCATTCGATTTGGCATGAAATTAGCTTCAAAATGAGTATAAACACGACTAGGTTAGAAATTTTTTGAAAATTTTATTTTTCCTGTCGAGACCCAAATTTTTGAAATTTTCAAAAAAATTCAAACTATGGCATGTTTATACTCATTTTGAAGCTCTTT</canonical>
            <polymorphic>TCGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTYCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTGGTGAATTGACCAAGCTGGAATTCAACATTGGCGTTCTCTTTAAACCTATTTGTCTTCTAGAAGCTCGTTGCTCATTCACATCCCACTGATAGCCGCCGGTTGATAGGCGGCTCACAAGCGGCTCACGGAAGTTTGGGCCAGAAGTCGCTGGAATCGCAGGAAAAGCACCCTGTAAATATGACCATTCGATTTGGCATGAAATTAGCTTCAAAATGAGTATAAACACGACTAGGTTAGAAATTTTTTGAAAATTTTATTTTTCCTGTCGAGACCCAAATTTTTGAAATTTTCAAAAAAATTCAAACTATGGCATGTTTATACTCATTTTGAAGCTCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGCTGTAAAACATTCAATAA</pcr_primer_p1>
		<pcr_primer_p2>CAATCGATATTCCGACTAGGTA</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTG</canonical_amplicon>
		<polymorphic_amplicon>CCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTYCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29181</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>105363</contig_pos>
        <strand></strand>
        <context>ggatagttty[C/T]gttcaaactk</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTT</left_flank>
        <right_flank>GTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTGGTGAATTGACCAAGCTGGAATTCAACATTGGCGTTCTCTTTAAACCTATTTGTCTTCTAGAAGCTCGTTGCTCATTCACATCCCACTGATAGCCGCCGGTTGATAGGCGGCTCACAAGCGGCTCACGGAAGTTTGGGCCAGAAGTCGCTGGAATCGCAGGAAAAGCACCCTGTAAATATGACCATTCGATTTGGCATGAAATTAGCTTCAAAATGAGTATAAACACGACTAGGTTAGAAATTTTTTGAAAATTTTATTTTTCCTGTCGAGACCCAAATTTTTGAAATTTTCAAAAAAATTCAAACTATGGCATGTTTATACTCATTTTGAAGCTCTTTA</canonical>
            <polymorphic>CGCCGCTCTTCGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTYGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTGGTGAATTGACCAAGCTGGAATTCAACATTGGCGTTCTCTTTAAACCTATTTGTCTTCTAGAAGCTCGTTGCTCATTCACATCCCACTGATAGCCGCCGGTTGATAGGCGGCTCACAAGCGGCTCACGGAAGTTTGGGCCAGAAGTCGCTGGAATCGCAGGAAAAGCACCCTGTAAATATGACCATTCGATTTGGCATGAAATTAGCTTCAAAATGAGTATAAACACGACTAGGTTAGAAATTTTTTGAAAATTTTATTTTTCCTGTCGAGACCCAAATTTTTGAAATTTTCAAAAAAATTCAAACTATGGCATGTTTATACTCATTTTGAAGCTCTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGCTGTAAAACATTCAATAA</pcr_primer_p1>
		<pcr_primer_p2>CAATCGATATTCCGACTAGGTA</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTG</canonical_amplicon>
		<polymorphic_amplicon>CCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTYGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29182</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>105373</contig_pos>
        <strand></strand>
        <context>ygttcaaact[G/T]attgaaatta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACT</left_flank>
        <right_flank>ATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTGGTGAATTGACCAAGCTGGAATTCAACATTGGCGTTCTCTTTAAACCTATTTGTCTTCTAGAAGCTCGTTGCTCATTCACATCCCACTGATAGCCGCCGGTTGATAGGCGGCTCACAAGCGGCTCACGGAAGTTTGGGCCAGAAGTCGCTGGAATCGCAGGAAAAGCACCCTGTAAATATGACCATTCGATTTGGCATGAAATTAGCTTCAAAATGAGTATAAACACGACTAGGTTAGAAATTTTTTGAAAATTTTATTTTTCCTGTCGAGACCCAAATTTTTGAAATTTTCAAAAAAATTCAAACTATGGCATGTTTATACTCATTTTGAAGCTCTTTAAACGCAAAAT</canonical>
            <polymorphic>CGTCGTCATTTTGAATGCAAACATGACGGGATTCTGGAGAAAATTCTTGCACAGTTTGGAATGGATAAATCCACCAATTCAGGTATTTTTCAACAAAAAATCGCAAACTCGCTCCATTGAATTTTTGGCGCGAAATTTGAATTTTTTAAAAATTGCTTATCGATTTCGATTTATTGATTTTTTTTCTGTTTTAACCTACTTCTTTGTTGTCTAAACGGCTCTTCTTGAATCCATTGCTCAGTGCTTAAGTTCATTCGATCGATTCTCATCGATCGGAGCTCTTCGGAAATTTCTCGAAGCCGAATTCTTGTTCTTCTGATGTCAGTTTCCAGAAGAGGTCCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTKATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTGGTGAATTGACCAAGCTGGAATTCAACATTGGCGTTCTCTTTAAACCTATTTGTCTTCTAGAAGCTCGTTGCTCATTCACATCCCACTGATAGCCGCCGGTTGATAGGCGGCTCACAAGCGGCTCACGGAAGTTTGGGCCAGAAGTCGCTGGAATCGCAGGAAAAGCACCCTGTAAATATGACCATTCGATTTGGCATGAAATTAGCTTCAAAATGAGTATAAACACGACTAGGTTAGAAATTTTTTGAAAATTTTATTTTTCCTGTCGAGACCCAAATTTTTGAAATTTTCAAAAAAATTCAAACTATGGCATGTTTATACTCATTTTGAAGCTCTTTAAACGCAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGCTGTAAAACATTCAATAA</pcr_primer_p1>
		<pcr_primer_p2>CAATCGATATTCCGACTAGGTA</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>CCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTGATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTG</canonical_amplicon>
		<polymorphic_amplicon>CCGCTGTAAAACATTCAATAAAAAATTTGAAAAATTTTAAGCCTAAATTCATAAGAATCCGATAAAAACTGTTGAAGTTATGTAATTTTGAAAATTGTCCAAAAATTTTTTTTCAACATTTTTTCAAAGTATCGTATCTCGGATAGTTTTCGTTCAAACTKATTGAAATTATAATTTTTGAATTTGGCAGGCTCAGAGCTTCAAAATGAGTATAAGCATGGCCATATTTGAAGGGAAAAGTGTTTTGAAAAAAATGCTTTTTTCGAATTTTTTTTCAAATTTTTTTTGCCTACCTAGTCGGAATATCGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29183</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>107491</contig_pos>
        <strand>+</strand>
        <context>CCTGAAATTC[A/G]ATTTTGGTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATTTTGACACCTGTGCCTTTAAATTTCTCTACAGTAGCCTGAAATTC</left_flank>
        <right_flank>ATTTTGGTATTTTTCGCGCATTTTTCGGCAATTTTCAATGATTTTTTTGT</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGCGGATTGATCGGGCCGTTGATGTTTTGGGTTGTCTGCGTCTCTCACAACGGCCCGTACTCTCTCTCCCTGGCCCTCGGTCAATCTTCATTGCTTGCTTCTTAGAGGGGGGTTTCTTCGGCATTTTTTTTATTTTATGCACATTTTTTATGGGATTTTTAGGTTTTTTTTTGGCTATTTTAGCTTAATTTGAGCCTATTTAGTTGGGAAATTCGGCAAAAATCTAGAAATTTCAGCCTCATTTCCTTTAAAAAGTAGAGCATGTCCCTTTAAACTGGGCTACTGTGGCTGCGCGATGTGGCAAATTGCCACTGGCAAAGAGCTGGGGTTTTCATTCGAATTGAAAATTTTAATTGGTTTTTAAACTCGTTTTTCGATTTTCTACCGAAATTTTGAGGCGGAAAAACCATTTTTACGGCTAAAAATCGTCAAAAAAGCGGTTCTGTCGAAAATTTTGACACCTGTGCCTTTAAATTTCTCTACAGTAGCCTGAAATTCAATTTTGGTATTTTTCGCGCATTTTTCGGCAATTTTCAATGATTTTTTTGTCATTTTCATTAGATTTTACTCTAAAAATTTCATTTTTACAAAAAAAAACCTAAAAATTGTGAATTTCATAAAAAATTTTCGACACCTGCGCCTTTAAATTTTTCCTACAGTAACCCGAAAATTTCGTTTTTTATCGATTTTTTTCTAGCGGCGAACGTTTTTCGCTAATTTTTTCACAGATTTTTCTCATTATTAAATGCGAAAAATTCAGAAAAAAAAGAATTTCAGAAAAAATGACATCTCCAGAAAAATCGATAAAATTGGAGCCGGATGACGAGGCGGATAATGGGGATTACGGTACAAATGGAGAAGGACCATCGGCAGAGATGCATTTAGGCCTAAATTCGGATCTTCAAAATTTGTTAAATCCCGAAAGAAAGGGGGGACCCGCTTGGTTTCCATCGTCCAAAGGGCGGTCCATTGTGTGGGAACACATCACTTGGGTCACTG</canonical>
            <polymorphic>GGGCGGATTGATCGGGCCGTTGATGTTTTGGGTTGTCTGCGTCTCTCACAACGGCCCGTACTCTCTCTCCCTGGCCCTCGGTCAATCTTCATTGCTTGCTTCTTAGAGGGGGGTTTCTTCGGCATTTTTTTTATTTTATGCACATTTTTTATGGGATTTTTAGGTTTTTTTTTGGCTATTTTAGCTTAATTTGAGCCTATTTAGTTGGGAAATTCGGCAAAAATCTAGAAATTTCAGCCTCATTTCCTTTAAAAAGTAGAGCATGTCCCTTTAAACTGGGCTACTGTGGCTGCGCGATGTGGCAAATTGCCACTGGCAAAGAGCTGGGGTTTTCATTCGAATTGAAAATTTTAATTGGTTTTTAAACTCGTTTTTCGATTTTCTACCGAAATTTTGAGGCGGAAAAACCATTTTTACGGCTAAAAATCGTCAAAAAAGCGGTTCTGTCGAAAATTTTGACACCTGTGCCTTTAAATTTCTCTACAGTAGCCTGAAATTCRATTTTGGTATTTTTCGCGCATTTTTCGGCAATTTTCAATGATTTTTTTGTCATTTTCATTAGATTTTACTCTAAAAATTTCATTTTTACAAAAAAAAACCTAAAAATTGTGAATTTCATAAAAAATTTTCGACACCTGCGCCTTTAAATTTTTCCTACAGTAACCCGAAAATTTCGTTTTTTATCGATTTTTTTCTAGCGGCGAACGTTTTTCGCTAATTTTTTCACAGATTTTTCTCATTATTAAATGCGAAAAATTCAGAAAAAAAAGAATTTCAGAAAAAATGACATCTCCAGAAAAATCGATAAAATTGGAGCCGGATGACGAGGCGGATAATGGGGATTACGGTACAAATGGAGAAGGACCATCGGCAGAGATGCATTTAGGCCTAAATTCGGATCTTCAAAATTTGTTAAATCCCGAAAGAAAGGGGGGACCCGCTTGGTTTCCATCGTCCAAAGGGCGGTCCATTGTGTGGGAACACATCACTTGGGTCACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>187 94 83 75 62 47 46 38 38 37 35 30 29 23 23 23 22 21 19 16 15 12 7 7 6 5</canonical_bands>
                <polymorphic_bands>187 94 83 75 62 47 46 38 38 37 35 35 29 23 23 23 22 21 19 16 15 12 7 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAACTCGTTTTTCGATTTTCTA</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCACAATTTTTAGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TAAACTCGTTTTTCGATTTTCTACCGAAATTTTGAGGCGGAAAAACCATTTTTACGGCTAAAAATCGTCAAAAAAGCGGTTCTGTCGAAAATTTTGACACCTGTGCCTTTAAATTTCTCTACAGTAGCCTGAAATTCAATTTTGGTATTTTTCGCGCATTTTTCGGCAATTTTCAATGATTTTTTTGTCATTTTCATTAGATTTTACTCTAAAAATTTCATTTTTACAAAAAAAAACCTAAAAATTGTGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>TAAACTCGTTTTTCGATTTTCTACCGAAATTTTGAGGCGGAAAAACCATTTTTACGGCTAAAAATCGTCAAAAAAGCGGTTCTGTCGAAAATTTTGACACCTGTGCCTTTAAATTTCTCTACAGTAGCCTGAAATTCRATTTTGGTATTTTTCGCGCATTTTTCGGCAATTTTCAATGATTTTTTTGTCATTTTCATTAGATTTTACTCTAAAAATTTCATTTTTACAAAAAAAAACCTAAAAATTGTGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29184</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>107581</contig_pos>
        <strand>+</strand>
        <context>TSATTTTTAC[C/T]AAAAAAAACC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTTTTTTGTCATTTTCATTAGATTTTACTCTAAAAATTTCATTTTTAC</left_flank>
        <right_flank>AAAAAAAACCTAAAAATTGTGAATTTCATAAAAAATTTTCGACACCTGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGCTTGCTTCTTAGAGGGGGGTTTCTTCGGCATTTTTTTTATTTTATGCACATTTTTTATGGGATTTTTAGGTTTTTTTTTGGCTATTTTAGCTTAATTTGAGCCTATTTAGTTGGGAAATTCGGCAAAAATCTAGAAATTTCAGCCTCATTTCCTTTAAAAAGTAGAGCATGTCCCTTTAAACTGGGCTACTGTGGCTGCGCGATGTGGCAAATTGCCACTGGCAAAGAGCTGGGGTTTTCATTCGAATTGAAAATTTTAATTGGTTTTTAAACTCGTTTTTCGATTTTCTACCGAAATTTTGAGGCGGAAAAACCATTTTTACGGCTAAAAATCGTCAAAAAAGCGGTTCTGTCGAAAATTTTGACACCTGTGCCTTTAAATTTCTCTACAGTAGCCTGAAATTCAATTTTGGTATTTTTCGCGCATTTTTCGGCAATTTTCAATGATTTTTTTGTCATTTTCATTAGATTTTACTCTAAAAATTTCATTTTTACAAAAAAAAACCTAAAAATTGTGAATTTCATAAAAAATTTTCGACACCTGCGCCTTTAAATTTTTCCTACAGTAACCCGAAAATTTCGTTTTTTATCGATTTTTTTCTAGCGGCGAACGTTTTTCGCTAATTTTTTCACAGATTTTTCTCATTATTAAATGCGAAAAATTCAGAAAAAAAAGAATTTCAGAAAAAATGACATCTCCAGAAAAATCGATAAAATTGGAGCCGGATGACGAGGCGGATAATGGGGATTACGGTACAAATGGAGAAGGACCATCGGCAGAGATGCATTTAGGCCTAAATTCGGATCTTCAAAATTTGTTAAATCCCGAAAGAAAGGGGGGACCCGCTTGGTTTCCATCGTCCAAAGGGCGGTCCATTGTGTGGGAACACATCACTTGGGTCACTGAGACGCAGAGAGCCGCCTGTAATTACTGTAGCGCTGAATTTCAGATAAAGGGTACGGTAGAAAATTTGGGGAAAAATTTTTTTTGAAAAT</canonical>
            <polymorphic>ATTGCTTGCTTCTTAGAGGGGGGTTTCTTCGGCATTTTTTTTATTTTATGCACATTTTTTATGGGATTTTTAGGTTTTTTTTTGGCTATTTTAGCTTAATTTGAGCCTATTTAGTTGGGAAATTCGGCAAAAATCTAGAAATTTCAGCCTCATTTCCTTTAAAAAGTAGAGCATGTCCCTTTAAACTGGGCTACTGTGGCTGCGCGATGTGGCAAATTGCCACTGGCAAAGAGCTGGGGTTTTCATTCGAATTGAAAATTTTAATTGGTTTTTAAACTCGTTTTTCGATTTTCTACCGAAATTTTGAGGCGGAAAAACCATTTTTACGGCTAAAAATCGTCAAAAAAGCGGTTCTGTCGAAAATTTTGACACCTGTGCCTTTAAATTTCTCTACAGTAGCCTGAAATTCAATTTTGGTATTTTTCGCGCATTTTTCGGCAATTTTCAATGATTTTTTTGTCATTTTCATTAGATTTTACTCTAAAAATTTCATTTTTACYAAAAAAAACCTAAAAATTGTGAATTTCATAAAAAATTTTCGACACCTGCGCCTTTAAATTTTTCCTACAGTAACCCGAAAATTTCGTTTTTTATCGATTTTTTTCTAGCGGCGAACGTTTTTCGCTAATTTTTTCACAGATTTTTCTCATTATTAAATGCGAAAAATTCAGAAAAAAAAGAATTTCAGAAAAAATGACATCTCCAGAAAAATCGATAAAATTGGAGCCGGATGACGAGGCGGATAATGGGGATTACGGTACAAATGGAGAAGGACCATCGGCAGAGATGCATTTAGGCCTAAATTCGGATCTTCAAAATTTGTTAAATCCCGAAAGAAAGGGGGGACCCGCTTGGTTTCCATCGTCCAAAGGGCGGTCCATTGTGTGGGAACACATCACTTGGGTCACTGAGACGCAGAGAGCCGCCTGTAATTACTGTAGCGCTGAATTTCAGATAAAGGGTACGGTAGAAAATTTGGGGAAAAATTTTTTTTGAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCGGCAATTTTCAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTGAATTTTTCGCATTTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCGGCAATTTTCAATGATTTTTTTGTCATTTTCATTAGATTTTACTCTAAAAATTTCATTTTTACAAAAAAAAACCTAAAAATTGTGAATTTCATAAAAAATTTTCGACACCTGCGCCTTTAAATTTTTCCTACAGTAACCCGAAAATTTCGTTTTTTATCGATTTTTTTCTAGCGGCGAACGTTTTTCGCTAATTTTTTCACAGATTTTTCTCATTATTAAATGCGAAAAATTCAGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCGGCAATTTTCAATGATTTTTTTGTCATTTTCATTAGATTTTACTCTAAAAATTTCATTTTTACYAAAAAAAACCTAAAAATTGTGAATTTCATAAAAAATTTTCGACACCTGCGCCTTTAAATTTTTCCTACAGTAACCCGAAAATTTCGTTTTTTATCGATTTTTTTCTAGCGGCGAACGTTTTTCGCTAATTTTTTCACAGATTTTTCTCATTATTAAATGCGAAAAATTCAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29185</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>115582</contig_pos>
        <strand>+</strand>
        <context>TTCCAGAAGA[G/T]ATTCCCTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCGATGAATTTCCAGAATTCTGGCAGACACCTTCAGACGTTTCCAGAAGA</left_flank>
        <right_flank>ATTCCCTTCTGAATATTTCCATTTGCCACGTGGAAAAATTCAAAAATTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTTACAAATTGCTGTAACTCGGCTCAAAACTGGAGTTTTTGAAATCTGAAAAATGCATTTGATAGAAATTAACAAGACAAACATTTTTATTAAAAAATAATTCAAAGACTTATAATTTCTAGGCCACCAATTTGGATTTCTAGGCCACCACCTCAAAATTGGCGTAACTTTGCTTAAAATTGAGGTTTTCTCAAAATTTAGCTTCCTATTTTTTTCTAAAATAAATTTTCAGATGTTGGCATTTCTATATTTCGTCCAAATGCTCATAAATCTTCCGAAAATGCTAGTTTTGAGCTGGAACAATGTGGTAAGAGAGATTTCTAGGCCACCTGAGCTTTCTAGGCCACCGGGGGATTTTAGGAATTTAAAAAATTTCAAAAAAATGTTTTTTCCAGATTTTCCCCCCAATGGATTCCTCCAAAATGGCTTTTCGAATAACTACAATATCCGATGAATTTCCAGAATTCTGGCAGACACCTTCAGACGTTTCCAGAAGAGATTCCCTTCTGAATATTTCCATTTGCCACGTGGAAAAATTCAAAAATTCAGAATTTTCGAAATTTGTCTGGAAATTTGATGGGCTGAAAATTTTCGGGAAAGAATGCAGCCGATTTTTTCGAATCCAGGATCGAAAAACTCATCGGGTTACTGTAGAAATTGGGGATACTGTATTATCAGAAAATTTGAGTTTGGCGCCGCCAAAAAAATTCTGGATCGCCTCAATCGGAGATTCATTTTCCTCGGGACAAGGCAACCCTGGGGACAAATGGCTCGATGGTAAGCTACAGTAATCCTACAGTACCCCAAGAGTACAGTATGCCTCATTTCAGAGTCTTGTTATCGATCGAAGCTGGCGTTTCCTGTGAGGATTTCCGAGAAAATCGAAACTTCCATTTTATCATTTTTATCTTGCTCGGGGAGTACTGTAGAACAAGGAATACTGTCGAAAAATGGGCAATTAGAGGTTTTAAACTCCTTAATTATGTCTCACGGCTCTC</canonical>
            <polymorphic>TGGTTACAAATTGCTGTAACTCGGCTCAAAACTGGAGTTTTTGAAATCTGAAAAATGCATTTGATAGAAATTAACAAGACAAACATTTTTATTAAAAAATAATTCAAAGACTTATAATTTCTAGGCCACCAATTTGGATTTCTAGGCCACCACCTCAAAATTGGCGTAACTTTGCTTAAAATTGAGGTTTTCTCAAAATTTAGCTTCCTATTTTTTTCTAAAATAAATTTTCAGATGTTGGCATTTCTATATTTCGTCCAAATGCTCATAAATCTTCCGAAAATGCTAGTTTTGAGCTGGAACAATGTGGTAAGAGAGATTTCTAGGCCACCTGAGCTTTCTAGGCCACCGGGGGATTTTAGGAATTTAAAAAATTTCAAAAAAATGTTTTTTCCAGATTTTCCCCCCAATGGATTCCTCCAAAATGGCTTTTCGAATAACTACAATATCCGATGAATTTCCAGAATTCTGGCAGACACCTTCAGACGTTTCCAGAAGAKATTCCCTTCTGAATATTTCCATTTGCCACGTGGAAAAATTCAAAAATTCAGAATTTTCGAAATTTGTCTGGAAATTTGATGGGCTGAAAATTTTCGGGAAAGAATGCAGCCGATTTTTTCGAATCCAGGATCGAAAAACTCATCGGGTTACTGTAGAAATTGGGGATACTGTATTATCAGAAAATTTGAGTTTGGCGCCGCCAAAAAAATTCTGGATCGCCTCAATCGGAGATTCATTTTCCTCGGGACAAGGCAACCCTGGGGACAAATGGCTCGATGGTAAGCTACAGTAATCCTACAGTACCCCAAGAGTACAGTATGCCTCATTTCAGAGTCTTGTTATCGATCGAAGCTGGCGTTTCCTGTGAGGATTTCCGAGAAAATCGAAACTTCCATTTTATCATTTTTATCTTGCTCGGGGAGTACTGTAGAACAAGGAATACTGTCGAAAAATGGGCAATTAGAGGTTTTAAACTCCTTAATTATGTCTCACGGCTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>413 168 121 110 101 87</canonical_bands>
                <polymorphic_bands>413 208 168 110 101</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>413 269 121 110 87</canonical_bands>
                <polymorphic_bands>413 269 208 110</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAATAACTACAATATCCGATGA</pcr_primer_p1>
		<pcr_primer_p2>TGATAATACAGTATCCCCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CGAATAACTACAATATCCGATGAATTTCCAGAATTCTGGCAGACACCTTCAGACGTTTCCAGAAGAGATTCCCTTCTGAATATTTCCATTTGCCACGTGGAAAAATTCAAAAATTCAGAATTTTCGAAATTTGTCTGGAAATTTGATGGGCTGAAAATTTTCGGGAAAGAATGCAGCCGATTTTTTCGAATCCAGGATCGAAAAACTCATCGGGTTACTGTAGAAATTGGGGATACTGTATTATCA</canonical_amplicon>
		<polymorphic_amplicon>CGAATAACTACAATATCCGATGAATTTCCAGAATTCTGGCAGACACCTTCAGACGTTTCCAGAAGAKATTCCCTTCTGAATATTTCCATTTGCCACGTGGAAAAATTCAAAAATTCAGAATTTTCGAAATTTGTCTGGAAATTTGATGGGCTGAAAATTTTCGGGAAAGAATGCAGCCGATTTTTTCGAATCCAGGATCGAAAAACTCATCGGGTTACTGTAGAAATTGGGGATACTGTATTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29186</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>115630</contig_pos>
        <strand>+</strand>
        <context>ATTCAAAAAT[C/T]CAGAATTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGATTCCCTTCTGAATATTTCCATTTGCCACGTGGAAAAATTCAAAAAT</left_flank>
        <right_flank>CAGAATTTTCGAAATTTGTCTGGAAATTTGATGGGCTGAAAATTTTCGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAAAATGCATTTGATAGAAATTAACAAGACAAACATTTTTATTAAAAAATAATTCAAAGACTTATAATTTCTAGGCCACCAATTTGGATTTCTAGGCCACCACCTCAAAATTGGCGTAACTTTGCTTAAAATTGAGGTTTTCTCAAAATTTAGCTTCCTATTTTTTTCTAAAATAAATTTTCAGATGTTGGCATTTCTATATTTCGTCCAAATGCTCATAAATCTTCCGAAAATGCTAGTTTTGAGCTGGAACAATGTGGTAAGAGAGATTTCTAGGCCACCTGAGCTTTCTAGGCCACCGGGGGATTTTAGGAATTTAAAAAATTTCAAAAAAATGTTTTTTCCAGATTTTCCCCCCAATGGATTCCTCCAAAATGGCTTTTCGAATAACTACAATATCCGATGAATTTCCAGAATTCTGGCAGACACCTTCAGACGTTTCCAGAAGAGATTCCCTTCTGAATATTTCCATTTGCCACGTGGAAAAATTCAAAAATTCAGAATTTTCGAAATTTGTCTGGAAATTTGATGGGCTGAAAATTTTCGGGAAAGAATGCAGCCGATTTTTTCGAATCCAGGATCGAAAAACTCATCGGGTTACTGTAGAAATTGGGGATACTGTATTATCAGAAAATTTGAGTTTGGCGCCGCCAAAAAAATTCTGGATCGCCTCAATCGGAGATTCATTTTCCTCGGGACAAGGCAACCCTGGGGACAAATGGCTCGATGGTAAGCTACAGTAATCCTACAGTACCCCAAGAGTACAGTATGCCTCATTTCAGAGTCTTGTTATCGATCGAAGCTGGCGTTTCCTGTGAGGATTTCCGAGAAAATCGAAACTTCCATTTTATCATTTTTATCTTGCTCGGGGAGTACTGTAGAACAAGGAATACTGTCGAAAAATGGGCAATTAGAGGTTTTAAACTCCTTAATTATGTCTCACGGCTCTCCTCCTGATATTTTATTCCTCACAATTGGCGGAAATGATATCGGATTCA</canonical>
            <polymorphic>TGAAAAATGCATTTGATAGAAATTAACAAGACAAACATTTTTATTAAAAAATAATTCAAAGACTTATAATTTCTAGGCCACCAATTTGGATTTCTAGGCCACCACCTCAAAATTGGCGTAACTTTGCTTAAAATTGAGGTTTTCTCAAAATTTAGCTTCCTATTTTTTTCTAAAATAAATTTTCAGATGTTGGCATTTCTATATTTCGTCCAAATGCTCATAAATCTTCCGAAAATGCTAGTTTTGAGCTGGAACAATGTGGTAAGAGAGATTTCTAGGCCACCTGAGCTTTCTAGGCCACCGGGGGATTTTAGGAATTTAAAAAATTTCAAAAAAATGTTTTTTCCAGATTTTCCCCCCAATGGATTCCTCCAAAATGGCTTTTCGAATAACTACAATATCCGATGAATTTCCAGAATTCTGGCAGACACCTTCAGACGTTTCCAGAAGAGATTCCCTTCTGAATATTTCCATTTGCCACGTGGAAAAATTCAAAAATYCAGAATTTTCGAAATTTGTCTGGAAATTTGATGGGCTGAAAATTTTCGGGAAAGAATGCAGCCGATTTTTTCGAATCCAGGATCGAAAAACTCATCGGGTTACTGTAGAAATTGGGGATACTGTATTATCAGAAAATTTGAGTTTGGCGCCGCCAAAAAAATTCTGGATCGCCTCAATCGGAGATTCATTTTCCTCGGGACAAGGCAACCCTGGGGACAAATGGCTCGATGGTAAGCTACAGTAATCCTACAGTACCCCAAGAGTACAGTATGCCTCATTTCAGAGTCTTGTTATCGATCGAAGCTGGCGTTTCCTGTGAGGATTTCCGAGAAAATCGAAACTTCCATTTTATCATTTTTATCTTGCTCGGGGAGTACTGTAGAACAAGGAATACTGTCGAAAAATGGGCAATTAGAGGTTTTAAACTCCTTAATTATGTCTCACGGCTCTCCTCCTGATATTTTATTCCTCACAATTGGCGGAAATGATATCGGATTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>341 148 138 94 83 72 29 25 16 12 9 9 9 8 7</canonical_bands>
                <polymorphic_bands>341 148 138 94 83 72 29 25 16 15 12 9 9 9</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>185 173 166 129 103 49 45 45 40 33 26 6</canonical_bands>
                <polymorphic_bands>185 173 169 166 103 49 45 45 33 26 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>251 138 83 72 69 42 32 29 28 26 25 25 22 21 20 17 16 15 15 12 9 9 9 8 7</canonical_bands>
                <polymorphic_bands>251 138 83 72 69 42 32 29 28 26 25 25 22 21 20 17 16 15 15 15 12 9 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAATAACTACAATATCCGATGA</pcr_primer_p1>
		<pcr_primer_p2>TGATAATACAGTATCCCCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CGAATAACTACAATATCCGATGAATTTCCAGAATTCTGGCAGACACCTTCAGACGTTTCCAGAAGAGATTCCCTTCTGAATATTTCCATTTGCCACGTGGAAAAATTCAAAAATTCAGAATTTTCGAAATTTGTCTGGAAATTTGATGGGCTGAAAATTTTCGGGAAAGAATGCAGCCGATTTTTTCGAATCCAGGATCGAAAAACTCATCGGGTTACTGTAGAAATTGGGGATACTGTATTATCA</canonical_amplicon>
		<polymorphic_amplicon>CGAATAACTACAATATCCGATGAATTTCCAGAATTCTGGCAGACACCTTCAGACGTTTCCAGAAGAGATTCCCTTCTGAATATTTCCATTTGCCACGTGGAAAAATTCAAAAATYCAGAATTTTCGAAATTTGTCTGGAAATTTGATGGGCTGAAAATTTTCGGGAAAGAATGCAGCCGATTTTTTCGAATCCAGGATCGAAAAACTCATCGGGTTACTGTAGAAATTGGGGATACTGTATTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29187</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>115738</contig_pos>
        <strand>+</strand>
        <context>GGTTACTGTA[A/G]AAATTGGGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCAGCCGATTTTTTCGAATCCAGGATCGAAAAACTCATCGGGTTACTGTA</left_flank>
        <right_flank>AAATTGGGGATACTGTATTATCAGAAAATTTGAGTTTGGCGCCGCCAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATTGGCGTAACTTTGCTTAAAATTGAGGTTTTCTCAAAATTTAGCTTCCTATTTTTTTCTAAAATAAATTTTCAGATGTTGGCATTTCTATATTTCGTCCAAATGCTCATAAATCTTCCGAAAATGCTAGTTTTGAGCTGGAACAATGTGGTAAGAGAGATTTCTAGGCCACCTGAGCTTTCTAGGCCACCGGGGGATTTTAGGAATTTAAAAAATTTCAAAAAAATGTTTTTTCCAGATTTTCCCCCCAATGGATTCCTCCAAAATGGCTTTTCGAATAACTACAATATCCGATGAATTTCCAGAATTCTGGCAGACACCTTCAGACGTTTCCAGAAGAGATTCCCTTCTGAATATTTCCATTTGCCACGTGGAAAAATTCAAAAATTCAGAATTTTCGAAATTTGTCTGGAAATTTGATGGGCTGAAAATTTTCGGGAAAGAATGCAGCCGATTTTTTCGAATCCAGGATCGAAAAACTCATCGGGTTACTGTAGAAATTGGGGATACTGTATTATCAGAAAATTTGAGTTTGGCGCCGCCAAAAAAATTCTGGATCGCCTCAATCGGAGATTCATTTTCCTCGGGACAAGGCAACCCTGGGGACAAATGGCTCGATGGTAAGCTACAGTAATCCTACAGTACCCCAAGAGTACAGTATGCCTCATTTCAGAGTCTTGTTATCGATCGAAGCTGGCGTTTCCTGTGAGGATTTCCGAGAAAATCGAAACTTCCATTTTATCATTTTTATCTTGCTCGGGGAGTACTGTAGAACAAGGAATACTGTCGAAAAATGGGCAATTAGAGGTTTTAAACTCCTTAATTATGTCTCACGGCTCTCCTCCTGATATTTTATTCCTCACAATTGGCGGAAATGATATCGGATTCACCGACGTGATTTCAATGGTCCAGCGAGACAGTAATATTGCTGATAAATTTGATATGAGGTATTTTTTCAATTATTAAAAATTATGTAAAACTCAATTCCACACATTTC</canonical>
            <polymorphic>AAAATTGGCGTAACTTTGCTTAAAATTGAGGTTTTCTCAAAATTTAGCTTCCTATTTTTTTCTAAAATAAATTTTCAGATGTTGGCATTTCTATATTTCGTCCAAATGCTCATAAATCTTCCGAAAATGCTAGTTTTGAGCTGGAACAATGTGGTAAGAGAGATTTCTAGGCCACCTGAGCTTTCTAGGCCACCGGGGGATTTTAGGAATTTAAAAAATTTCAAAAAAATGTTTTTTCCAGATTTTCCCCCCAATGGATTCCTCCAAAATGGCTTTTCGAATAACTACAATATCCGATGAATTTCCAGAATTCTGGCAGACACCTTCAGACGTTTCCAGAAGAGATTCCCTTCTGAATATTTCCATTTGCCACGTGGAAAAATTCAAAAATTCAGAATTTTCGAAATTTGTCTGGAAATTTGATGGGCTGAAAATTTTCGGGAAAGAATGCAGCCGATTTTTTCGAATCCAGGATCGAAAAACTCATCGGGTTACTGTARAAATTGGGGATACTGTATTATCAGAAAATTTGAGTTTGGCGCCGCCAAAAAAATTCTGGATCGCCTCAATCGGAGATTCATTTTCCTCGGGACAAGGCAACCCTGGGGACAAATGGCTCGATGGTAAGCTACAGTAATCCTACAGTACCCCAAGAGTACAGTATGCCTCATTTCAGAGTCTTGTTATCGATCGAAGCTGGCGTTTCCTGTGAGGATTTCCGAGAAAATCGAAACTTCCATTTTATCATTTTTATCTTGCTCGGGGAGTACTGTAGAACAAGGAATACTGTCGAAAAATGGGCAATTAGAGGTTTTAAACTCCTTAATTATGTCTCACGGCTCTCCTCCTGATATTTTATTCCTCACAATTGGCGGAAATGATATCGGATTCACCGACGTGATTTCAATGGTCCAGCGAGACAGTAATATTGCTGATAAATTTGATATGAGGTATTTTTTCAATTATTAAAAATTATGTAAAACTCAATTCCACACATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>495 230 134 130 11</canonical_bands>
                <polymorphic_bands>629 230 130 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTTGTCTGGAAATTTGATG</pcr_primer_p1>
		<pcr_primer_p2>TTGGGGTACTGTAGGATTACTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTTGTCTGGAAATTTGATGGGCTGAAAATTTTCGGGAAAGAATGCAGCCGATTTTTTCGAATCCAGGATCGAAAAACTCATCGGGTTACTGTAGAAATTGGGGATACTGTATTATCAGAAAATTTGAGTTTGGCGCCGCCAAAAAAATTCTGGATCGCCTCAATCGGAGATTCATTTTCCTCGGGACAAGGCAACCCTGGGGACAAATGGCTCGATGGTAAGCTACAGTAATCCTACAGTACCCCAA</canonical_amplicon>
		<polymorphic_amplicon>AAATTTGTCTGGAAATTTGATGGGCTGAAAATTTTCGGGAAAGAATGCAGCCGATTTTTTCGAATCCAGGATCGAAAAACTCATCGGGTTACTGTARAAATTGGGGATACTGTATTATCAGAAAATTTGAGTTTGGCGCCGCCAAAAAAATTCTGGATCGCCTCAATCGGAGATTCATTTTCCTCGGGACAAGGCAACCCTGGGGACAAATGGCTCGATGGTAAGCTACAGTAATCCTACAGTACCCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29188</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>115762</contig_pos>
        <strand>+</strand>
        <context>TGTATTATCA[A/G]AAAATTTGAR</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCGAAAAACTCATCGGGTTACTGTAGAAATTGGGGATACTGTATTATCA</left_flank>
        <right_flank>AAAATTTGAGTTTGGCGCCGCCAAAAAAATTCTGGATCGCCTCAATCGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGAGGTTTTCTCAAAATTTAGCTTCCTATTTTTTTCTAAAATAAATTTTCAGATGTTGGCATTTCTATATTTCGTCCAAATGCTCATAAATCTTCCGAAAATGCTAGTTTTGAGCTGGAACAATGTGGTAAGAGAGATTTCTAGGCCACCTGAGCTTTCTAGGCCACCGGGGGATTTTAGGAATTTAAAAAATTTCAAAAAAATGTTTTTTCCAGATTTTCCCCCCAATGGATTCCTCCAAAATGGCTTTTCGAATAACTACAATATCCGATGAATTTCCAGAATTCTGGCAGACACCTTCAGACGTTTCCAGAAGAGATTCCCTTCTGAATATTTCCATTTGCCACGTGGAAAAATTCAAAAATTCAGAATTTTCGAAATTTGTCTGGAAATTTGATGGGCTGAAAATTTTCGGGAAAGAATGCAGCCGATTTTTTCGAATCCAGGATCGAAAAACTCATCGGGTTACTGTAGAAATTGGGGATACTGTATTATCAGAAAATTTGAGTTTGGCGCCGCCAAAAAAATTCTGGATCGCCTCAATCGGAGATTCATTTTCCTCGGGACAAGGCAACCCTGGGGACAAATGGCTCGATGGTAAGCTACAGTAATCCTACAGTACCCCAAGAGTACAGTATGCCTCATTTCAGAGTCTTGTTATCGATCGAAGCTGGCGTTTCCTGTGAGGATTTCCGAGAAAATCGAAACTTCCATTTTATCATTTTTATCTTGCTCGGGGAGTACTGTAGAACAAGGAATACTGTCGAAAAATGGGCAATTAGAGGTTTTAAACTCCTTAATTATGTCTCACGGCTCTCCTCCTGATATTTTATTCCTCACAATTGGCGGAAATGATATCGGATTCACCGACGTGATTTCAATGGTCCAGCGAGACAGTAATATTGCTGATAAATTTGATATGAGGTATTTTTTCAATTATTAAAAATTATGTAAAACTCAATTCCACACATTTCCCACTTTTCAAAACTCAAAAACAC</canonical>
            <polymorphic>ATTGAGGTTTTCTCAAAATTTAGCTTCCTATTTTTTTCTAAAATAAATTTTCAGATGTTGGCATTTCTATATTTCGTCCAAATGCTCATAAATCTTCCGAAAATGCTAGTTTTGAGCTGGAACAATGTGGTAAGAGAGATTTCTAGGCCACCTGAGCTTTCTAGGCCACCGGGGGATTTTAGGAATTTAAAAAATTTCAAAAAAATGTTTTTTCCAGATTTTCCCCCCAATGGATTCCTCCAAAATGGCTTTTCGAATAACTACAATATCCGATGAATTTCCAGAATTCTGGCAGACACCTTCAGACGTTTCCAGAAGAGATTCCCTTCTGAATATTTCCATTTGCCACGTGGAAAAATTCAAAAATTCAGAATTTTCGAAATTTGTCTGGAAATTTGATGGGCTGAAAATTTTCGGGAAAGAATGCAGCCGATTTTTTCGAATCCAGGATCGAAAAACTCATCGGGTTACTGTAGAAATTGGGGATACTGTATTATCARAAAATTTGAGTTTGGCGCCGCCAAAAAAATTCTGGATCGCCTCAATCGGAGATTCATTTTCCTCGGGACAAGGCAACCCTGGGGACAAATGGCTCGATGGTAAGCTACAGTAATCCTACAGTACCCCAAGAGTACAGTATGCCTCATTTCAGAGTCTTGTTATCGATCGAAGCTGGCGTTTCCTGTGAGGATTTCCGAGAAAATCGAAACTTCCATTTTATCATTTTTATCTTGCTCGGGGAGTACTGTAGAACAAGGAATACTGTCGAAAAATGGGCAATTAGAGGTTTTAAACTCCTTAATTATGTCTCACGGCTCTCCTCCTGATATTTTATTCCTCACAATTGGCGGAAATGATATCGGATTCACCGACGTGATTTCAATGGTCCAGCGAGACAGTAATATTGCTGATAAATTTGATATGAGGTATTTTTTCAATTATTAAAAATTATGTAAAACTCAATTCCACACATTTCCCACTTTTCAAAACTCAAAAACAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>173 166 138 129 103 53 49 45 45 40 33 26</canonical_bands>
                <polymorphic_bands>178 173 166 138 103 53 45 45 40 33 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTTGTCTGGAAATTTGATG</pcr_primer_p1>
		<pcr_primer_p2>TTGGGGTACTGTAGGATTACTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTTGTCTGGAAATTTGATGGGCTGAAAATTTTCGGGAAAGAATGCAGCCGATTTTTTCGAATCCAGGATCGAAAAACTCATCGGGTTACTGTAGAAATTGGGGATACTGTATTATCAGAAAATTTGAGTTTGGCGCCGCCAAAAAAATTCTGGATCGCCTCAATCGGAGATTCATTTTCCTCGGGACAAGGCAACCCTGGGGACAAATGGCTCGATGGTAAGCTACAGTAATCCTACAGTACCCCAA</canonical_amplicon>
		<polymorphic_amplicon>AAATTTGTCTGGAAATTTGATGGGCTGAAAATTTTCGGGAAAGAATGCAGCCGATTTTTTCGAATCCAGGATCGAAAAACTCATCGGGTTACTGTAGAAATTGGGGATACTGTATTATCARAAAATTTGAGTTTGGCGCCGCCAAAAAAATTCTGGATCGCCTCAATCGGAGATTCATTTTCCTCGGGACAAGGCAACCCTGGGGACAAATGGCTCGATGGTAAGCTACAGTAATCCTACAGTACCCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29189</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>117866</contig_pos>
        <strand></strand>
        <context>aaattttttt[T/G]raaatttttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AAAGAGCGGGAAATTTTAAAAATTTGAATTTTTGAAAAAAAAATTTTTTT</left_flank>
        <right_flank>GAAATTTTTTTTTTGTATTCTGGGCATTTTTTGATCTCTTTGTGACTGTG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTCGAGAAATGAACATCTCTCGTGTAGTCCTATTGGACTACTATGACGTCACGAAAAACGATAGGAACGAGGTAGACGCCTCATGTGGAGCCTTTGGGCAGGTACAGTAATCCTTATTCATTAAAAAACCAGCAAAAAAATTTTTAGGTGTCTTTGTCAAATTTGAAATTGGCGGAGAAGAAAATTCTGCAACGACTCAACCAGCTATTACGGCGAAAAGCCCAGGAGTACGGTTGGATTACTGTAGACACCTCGGAAATTTTCGGAACACGTGGCATTTGTTCCAGCAGGAGTTTGATACGGTAGCTTCAAAGTACCGTAATCCTCGAAACTTCATTTTTAAGGTCCCGGAACGAAAGTTTGGTGCTACAGGGAAACGAGTACGGTAGTTTTCATCCAAACGAAGAAGCACATCAATTGATTTCGATGAAGATTTTGAAAACTTTGAAAGAGCGGGAAATTTTAAAAATTTGAATTTTTGAAAAAAAAATTTTTTTTGAAATTTTTTTTTTGTATTCTGGGCATTTTTTGATCTCTTTGTGACTGTGTTTTCTTGCCAAATGAATCATTTTTCCGTTTTTCACACTTTTCCGGAAAAAAAACTGAAAATTAGCGATTTGGAGACAAGTTACGAGATGGTGGCCTAGGAAACCAAATTTAAAAAAAAACTAGGCCACTACAAAAAATACATGTGTCCGACGTAGTTTTCTACGCTGAACACAAATATGTTTTCAAAATTCAAAAATATTGATTTTGAAGCGAGTTACAAGGATTTACCTCTCCTGGCCTAGAAATCCAAATTTCAAAAAAACTCGGCCACCAAAATAAAATATGTGTATCCAACGAAGATTTGTATGCTGAGCTCGAATCTGTTCTCAGATTTTAGAAATACCGATTCTGAAGCGAGTTACAGCGATTTTCACATGGTGGCCTACAAAACCAAATTTTCGAAAAACTCGGCCGCATCGAAATTTTTATACTATCCGATGTGATTTTTT</canonical>
            <polymorphic>GCTTCGAGAAATGAACATCTCTCGTGTAGTCCTATTGGACTACTATGACGTCACGAAAAACGATAGGAACGAGGTAGACGCCTCATGTGGAGCCTTTGGGCAGGTACAGTAATCCTTATTCATTAAAAAACCAGCAAAAAAATTTTTAGGTGTCTTTGTCAAATTTGAAATTGGCGGAGAAGAAAATTCTGCAACGACTCAACCAGCTATTACGGCGAAAAGCCCAGGAGTACGGTTGGATTACTGTAGACACCTCGGAAATTTTCGGAACACGTGGCATTTGTTCCAGCAGGAGTTTGATACGGTAGCTTCAAAGTACCGTAATCCTCGAAACTTCATTTTTAAGGTCCCGGAACGAAAGTTTGGTGCTACAGGGAAACGAGTACGGTAGTTTTCATCCAAACGAAGAAGCACATCAATTGATTTCGATGAAGATTTTGAAAACTTTGAAAGAGCGGGAAATTTTAAAAATTTGAATTTTTGAAAAAAAAATTTTTTTKGAAATTTTTTTTTTGTATTCTGGGCATTTTTTGATCTCTTTGTGACTGTGTTTTCTTGCCAAATGAATCATTTTTCCGTTTTTCACACTTTTCCGGAAAAAAAACTGAAAATTAGCGATTTGGAGACAAGTTACGAGATGGTGGCCTAGGAAACCAAATTTAAAAAAAAACTAGGCCACTACAAAAAATACATGTGTCCGACGTAGTTTTCTACGCTGAACACAAATATGTTTTCAAAATTCAAAAATATTGATTTTGAAGCGAGTTACAAGGATTTACCTCTCCTGGCCTAGAAATCCAAATTTCAAAAAAACTCGGCCACCAAAATAAAATATGTGTATCCAACGAAGATTTGTATGCTGAGCTCGAATCTGTTCTCAGATTTTAGAAATACCGATTCTGAAGCGAGTTACAGCGATTTTCACATGGTGGCCTACAAAACCAAATTTTCGAAAAACTCGGCCGCATCGAAATTTTTATACTATCCGATGTGATTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTCAAAGTACCGTAATCCT</pcr_primer_p1>
		<pcr_primer_p2>AAGAAAACACAGTCACAAAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTTCAAAGTACCGTAATCCTCGAAACTTCATTTTTAAGGTCCCGGAACGAAAGTTTGGTGCTACAGGGAAACGAGTACGGTAGTTTTCATCCAAACGAAGAAGCACATCAATTGATTTCGATGAAGATTTTGAAAACTTTGAAAGAGCGGGAAATTTTAAAAATTTGAATTTTTGAAAAAAAAATTTTTTTTGAAATTTTTTTTTTGTATTCTGGGCATTTTTTGATCTCTTTGTGACTGTGTTTTCTT</canonical_amplicon>
		<polymorphic_amplicon>GCTTCAAAGTACCGTAATCCTCGAAACTTCATTTTTAAGGTCCCGGAACGAAAGTTTGGTGCTACAGGGAAACGAGTACGGTAGTTTTCATCCAAACGAAGAAGCACATCAATTGATTTCGATGAAGATTTTGAAAACTTTGAAAGAGCGGGAAATTTTAAAAATTTGAATTTTTGAAAAAAAAATTTTTTTKGAAATTTTTTTTTTGTATTCTGGGCATTTTTTGATCTCTTTGTGACTGTGTTTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29190</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>117867</contig_pos>
        <strand></strand>
        <context>aatttttttk[G/A]aaattttttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAGAGCGGGAAATTTTAAAAATTTGAATTTTTGAAAAAAAAATTTTTTTT</left_flank>
        <right_flank>AAATTTTTTTTTTGTATTCTGGGCATTTTTTGATCTCTTTGTGACTGTGT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCGAGAAATGAACATCTCTCGTGTAGTCCTATTGGACTACTATGACGTCACGAAAAACGATAGGAACGAGGTAGACGCCTCATGTGGAGCCTTTGGGCAGGTACAGTAATCCTTATTCATTAAAAAACCAGCAAAAAAATTTTTAGGTGTCTTTGTCAAATTTGAAATTGGCGGAGAAGAAAATTCTGCAACGACTCAACCAGCTATTACGGCGAAAAGCCCAGGAGTACGGTTGGATTACTGTAGACACCTCGGAAATTTTCGGAACACGTGGCATTTGTTCCAGCAGGAGTTTGATACGGTAGCTTCAAAGTACCGTAATCCTCGAAACTTCATTTTTAAGGTCCCGGAACGAAAGTTTGGTGCTACAGGGAAACGAGTACGGTAGTTTTCATCCAAACGAAGAAGCACATCAATTGATTTCGATGAAGATTTTGAAAACTTTGAAAGAGCGGGAAATTTTAAAAATTTGAATTTTTGAAAAAAAAATTTTTTTTGAAATTTTTTTTTTGTATTCTGGGCATTTTTTGATCTCTTTGTGACTGTGTTTTCTTGCCAAATGAATCATTTTTCCGTTTTTCACACTTTTCCGGAAAAAAAACTGAAAATTAGCGATTTGGAGACAAGTTACGAGATGGTGGCCTAGGAAACCAAATTTAAAAAAAAACTAGGCCACTACAAAAAATACATGTGTCCGACGTAGTTTTCTACGCTGAACACAAATATGTTTTCAAAATTCAAAAATATTGATTTTGAAGCGAGTTACAAGGATTTACCTCTCCTGGCCTAGAAATCCAAATTTCAAAAAAACTCGGCCACCAAAATAAAATATGTGTATCCAACGAAGATTTGTATGCTGAGCTCGAATCTGTTCTCAGATTTTAGAAATACCGATTCTGAAGCGAGTTACAGCGATTTTCACATGGTGGCCTACAAAACCAAATTTTCGAAAAACTCGGCCGCATCGAAATTTTTATACTATCCGATGTGATTTTTTG</canonical>
            <polymorphic>CTTCGAGAAATGAACATCTCTCGTGTAGTCCTATTGGACTACTATGACGTCACGAAAAACGATAGGAACGAGGTAGACGCCTCATGTGGAGCCTTTGGGCAGGTACAGTAATCCTTATTCATTAAAAAACCAGCAAAAAAATTTTTAGGTGTCTTTGTCAAATTTGAAATTGGCGGAGAAGAAAATTCTGCAACGACTCAACCAGCTATTACGGCGAAAAGCCCAGGAGTACGGTTGGATTACTGTAGACACCTCGGAAATTTTCGGAACACGTGGCATTTGTTCCAGCAGGAGTTTGATACGGTAGCTTCAAAGTACCGTAATCCTCGAAACTTCATTTTTAAGGTCCCGGAACGAAAGTTTGGTGCTACAGGGAAACGAGTACGGTAGTTTTCATCCAAACGAAGAAGCACATCAATTGATTTCGATGAAGATTTTGAAAACTTTGAAAGAGCGGGAAATTTTAAAAATTTGAATTTTTGAAAAAAAAATTTTTTTTRAAATTTTTTTTTTGTATTCTGGGCATTTTTTGATCTCTTTGTGACTGTGTTTTCTTGCCAAATGAATCATTTTTCCGTTTTTCACACTTTTCCGGAAAAAAAACTGAAAATTAGCGATTTGGAGACAAGTTACGAGATGGTGGCCTAGGAAACCAAATTTAAAAAAAAACTAGGCCACTACAAAAAATACATGTGTCCGACGTAGTTTTCTACGCTGAACACAAATATGTTTTCAAAATTCAAAAATATTGATTTTGAAGCGAGTTACAAGGATTTACCTCTCCTGGCCTAGAAATCCAAATTTCAAAAAAACTCGGCCACCAAAATAAAATATGTGTATCCAACGAAGATTTGTATGCTGAGCTCGAATCTGTTCTCAGATTTTAGAAATACCGATTCTGAAGCGAGTTACAGCGATTTTCACATGGTGGCCTACAAAACCAAATTTTCGAAAAACTCGGCCGCATCGAAATTTTTATACTATCCGATGTGATTTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTCAAAGTACCGTAATCCT</pcr_primer_p1>
		<pcr_primer_p2>AAGAAAACACAGTCACAAAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTTCAAAGTACCGTAATCCTCGAAACTTCATTTTTAAGGTCCCGGAACGAAAGTTTGGTGCTACAGGGAAACGAGTACGGTAGTTTTCATCCAAACGAAGAAGCACATCAATTGATTTCGATGAAGATTTTGAAAACTTTGAAAGAGCGGGAAATTTTAAAAATTTGAATTTTTGAAAAAAAAATTTTTTTTGAAATTTTTTTTTTGTATTCTGGGCATTTTTTGATCTCTTTGTGACTGTGTTTTCTT</canonical_amplicon>
		<polymorphic_amplicon>GCTTCAAAGTACCGTAATCCTCGAAACTTCATTTTTAAGGTCCCGGAACGAAAGTTTGGTGCTACAGGGAAACGAGTACGGTAGTTTTCATCCAAACGAAGAAGCACATCAATTGATTTCGATGAAGATTTTGAAAACTTTGAAAGAGCGGGAAATTTTAAAAATTTGAATTTTTGAAAAAAAAATTTTTTTTRAAATTTTTTTTTTGTATTCTGGGCATTTTTTGATCTCTTTGTGACTGTGTTTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29191</snp_id>
        <super_contig>c004400818.Contig5</super_contig>
        <contig_pos>118135</contig_pos>
        <strand></strand>
        <context>aagcgagtta[C/A]aaggatttac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AACACAAATATGTTTTCAAAATTCAAAAATATTGATTTTGAAGCGAGTTA</left_flank>
        <right_flank>AAGGATTTACCTCTCCTGGCCTAGAAATCCAAATTTCAAAAAAACTCGGC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACGTGGCATTTGTTCCAGCAGGAGTTTGATACGGTAGCTTCAAAGTACCGTAATCCTCGAAACTTCATTTTTAAGGTCCCGGAACGAAAGTTTGGTGCTACAGGGAAACGAGTACGGTAGTTTTCATCCAAACGAAGAAGCACATCAATTGATTTCGATGAAGATTTTGAAAACTTTGAAAGAGCGGGAAATTTTAAAAATTTGAATTTTTGAAAAAAAAATTTTTTTTGAAATTTTTTTTTTGTATTCTGGGCATTTTTTGATCTCTTTGTGACTGTGTTTTCTTGCCAAATGAATCATTTTTCCGTTTTTCACACTTTTCCGGAAAAAAAACTGAAAATTAGCGATTTGGAGACAAGTTACGAGATGGTGGCCTAGGAAACCAAATTTAAAAAAAAACTAGGCCACTACAAAAAATACATGTGTCCGACGTAGTTTTCTACGCTGAACACAAATATGTTTTCAAAATTCAAAAATATTGATTTTGAAGCGAGTTACAAGGATTTACCTCTCCTGGCCTAGAAATCCAAATTTCAAAAAAACTCGGCCACCAAAATAAAATATGTGTATCCAACGAAGATTTGTATGCTGAGCTCGAATCTGTTCTCAGATTTTAGAAATACCGATTCTGAAGCGAGTTACAGCGATTTTCACATGGTGGCCTACAAAACCAAATTTTCGAAAAACTCGGCCGCATCGAAATTTTTATACTATCCGATGTGATTTTTTGCGCTAAACTTGAATCTGTTTTCAAAATTCAGAAAAGTTGAATCTCCGCCGAGTTAGGGCTGTTTGTAACCTGTGGCCTAGAAATTCCTAGGCCACCAATCTTCAAATCGCTGTAACTCGGCTCAAAGTTTAGATTTTTGAGTTCTGAGAAAAAATTCGAGCTAAGCATGAAAAACTACATTGGATTTGTATGTGTTTTTTATGGTGGCCGAGTTTTCCGAAAATTTGGATTTCTAGGCCACCGAACTTCAAGTCGCTGTAACTCGGCT</canonical>
            <polymorphic>ACACGTGGCATTTGTTCCAGCAGGAGTTTGATACGGTAGCTTCAAAGTACCGTAATCCTCGAAACTTCATTTTTAAGGTCCCGGAACGAAAGTTTGGTGCTACAGGGAAACGAGTACGGTAGTTTTCATCCAAACGAAGAAGCACATCAATTGATTTCGATGAAGATTTTGAAAACTTTGAAAGAGCGGGAAATTTTAAAAATTTGAATTTTTGAAAAAAAAATTTTTTTTGAAATTTTTTTTTTGTATTCTGGGCATTTTTTGATCTCTTTGTGACTGTGTTTTCTTGCCAAATGAATCATTTTTCCGTTTTTCACACTTTTCCGGAAAAAAAACTGAAAATTAGCGATTTGGAGACAAGTTACGAGATGGTGGCCTAGGAAACCAAATTTAAAAAAAAACTAGGCCACTACAAAAAATACATGTGTCCGACGTAGTTTTCTACGCTGAACACAAATATGTTTTCAAAATTCAAAAATATTGATTTTGAAGCGAGTTAMAAGGATTTACCTCTCCTGGCCTAGAAATCCAAATTTCAAAAAAACTCGGCCACCAAAATAAAATATGTGTATCCAACGAAGATTTGTATGCTGAGCTCGAATCTGTTCTCAGATTTTAGAAATACCGATTCTGAAGCGAGTTACAGCGATTTTCACATGGTGGCCTACAAAACCAAATTTTCGAAAAACTCGGCCGCATCGAAATTTTTATACTATCCGATGTGATTTTTTGCGCTAAACTTGAATCTGTTTTCAAAATTCAGAAAAGTTGAATCTCCGCCGAGTTAGGGCTGTTTGTAACCTGTGGCCTAGAAATTCCTAGGCCACCAATCTTCAAATCGCTGTAACTCGGCTCAAAGTTTAGATTTTTGAGTTCTGAGAAAAAATTCGAGCTAAGCATGAAAAACTACATTGGATTTGTATGTGTTTTTTATGGTGGCCGAGTTTTCCGAAAATTTGGATTTCTAGGCCACCGAACTTCAAGTCGCTGTAACTCGGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>272 157 146 144 135 88 47 11</canonical_bands>
                <polymorphic_bands>279 272 157 146 88 47 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCGTTTTTCACACTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TGTAAGACACAATTTCCTACATTT</pcr_primer_p2>
		<pcr_amplicon_size>902</pcr_amplicon_size>
		<canonical_amplicon>TTCCGTTTTTCACACTTTTCCGGAAAAAAAACTGAAAATTAGCGATTTGGAGACAAGTTACGAGATGGTGGCCTAGGAAACCAAATTTAAAAAAAAACTAGGCCACTACAAAAAATACATGTGTCCGACGTAGTTTTCTACGCTGAACACAAATATGTTTTCAAAATTCAAAAATATTGATTTTGAAGCGAGTTACAAGGATTTACCTCTCCTGGCCTA</canonical_amplicon>
		<polymorphic_amplicon>TTCCGTTTTTCACACTTTTCCGGAAAAAAAACTGAAAATTAGCGATTTGGAGACAAGTTACGAGATGGTGGCCTAGGAAACCAAATTTAAAAAAAAACTAGGCCACTACAAAAAATACATGTGTCCGACGTAGTTTTCTACGCTGAACACAAATATGTTTTCAAAATTCAAAAATATTGATTTTGAAGCGAGTTAMAAGGATTTACCTCTCCTGGCCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29192</snp_id>
        <super_contig>c004400954.Contig1</super_contig>
        <contig_pos>337</contig_pos>
        <strand>+</strand>
        <context>TGCATTGCAA[A/G]AGAAATTAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCTTGCGGCACTGTCTCCATCCACTCGAAATGGAGAGAGTGCATTGCAA</left_flank>
        <right_flank>AGAAATTAGGCTCCGCCCCCTACTCTCTGCGGATAGAGAGGGACCCGTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGAAAAAAATCCGGAAATTCTAGAAAAAAAACTTTTGCTGAATTTTTAAGGTTTAGGAAAAACCGAAAAAGGGCAAAAAACGGAAGCCCTTAGAAGCAAAAAAAAAACCACGGAAATGCGTATCTAACTACGGTAGAAATCTCAGAATCCCCACTAAAACGAATCTCTAATCAAGAAACGAAACGAAACACGGGGGACTATATCAAAACTAAAAAGTGGGAATATATCTAATTAGATGTATTCCAATCAAAACGAAGAAACACACGACCACATTCTAATTCCATGTCTTGCGGCACTGTCTCCATCCACTCGAAATGGAGAGAGTGCATTGCAAGAGAAATTAGGCTCCGCCCCCTACTCTCTGCGGATAGAGAGGGACCCGTGAAGAGACGCGCAGAGAAAAGGAACCAAGAGAACCAGGCCCGGAGGCCCGGTCGGCCCGGAAGTTTACCGCGAACCTCAAAATCTTGAGCGAAAAGTTGAATCATTGTTTCGAAAAAAGGTATTCAGTGTTTTTTTCTTCGAGTTATTTTTCAATACATTCTAAAAATCAATAAATTCATTTTCAAAAACAAAAACAAAATTCAAAAACAAAAATTCATTATTCAAAAATTTTGTTTTTTTTTTTCTGCCGGGCCCTGAAAATTTTCTCTCAACCCGGCCCGGCCCGGGCCGGGCGGGCCGGGCCGAACCCGGGCCGGGCCGAAATTTCACAAGTATGGAGATTATGAGCTTGGGAGCTTGGGAGCTTCCGTAAGGTAAAGTTAAGATGGACCTCGTCGAGATCTATCATTTGATATCAAATCCGTCAAAATATCTGGTTCTGAAGCCGAGTTATCTGCCGGCCCGCTATCTGTCCGGGCCGGCCCGTTTGCAACTATGGTTTTTAACCTTCAAAATGGGGTTAAAAATTGGCTAAAAACACGACAAAATTGCTCGAAAATGATCGGAAGAGGACAACATTTTGAAGAAAAAAATCCGGAAATTCTAGAAAAAAA</canonical>
            <polymorphic>GAAGAAAAAAATCCGGAAATTCTAGAAAAAAAACTTTTGCTGAATTTTTAAGGTTTAGGAAAAACCGAAAAAGGGCAAAAAACGGAAGCCCTTAGAAGCAAAAAAAAAACCACGGAAATGCGTATCTAACTACGGTAGAAATCTCAGAATCCCCACTAAAACGAATCTCTAATCAAGAAACGAAACGAAACACGGGGGACTATATCAAAACTAAAAAGTGGGAATATATCTAATTAGATGTATTCCAATCAAAACGAAGAAACACACGACCACATTCTAATTCCATGTCTTGCGGCACTGTCTCCATCCACTCGAAATGGAGAGAGTGCATTGCAARAGAAATTAGGCTCCGCCCCCTACTCTCTGCGGATAGAGAGGGACCCGTGAAGAGACGCGCAGAGAAAAGGAACCAAGAGAACCAGGCCCGGAGGCCCGGTCGGCCCGGAAGTTTACCGCGAACCTCAAAATCTTGAGCGAAAAGTTGAATCATTGTTTCGAAAAAAGGTATTCAGTGTTTTTTTCTTCGAGTTATTTTTCAATACATTCTAAAAATCAATAAATTCATTTTCAAAAACAAAAACAAAATTCAAAAACAAAAATTCATTATTCAAAAATTTTGTTTTTTTTTTTCTGCCGGGCCCTGAAAATTTTCTCTCAACCCGGCCCGGCCCGGGCCGGGCGGGCCGGGCCGAACCCGGGCCGGGCCGAAATTTCACAAGTATGGAGATTATGAGCTTGGGAGCTTGGGAGCTTCCGTAAGGTAAAGTTAAGATGGACCTCGTCGAGATCTATCATTTGATATCAAATCCGTCAAAATATCTGGTTCTGAAGCCGAGTTATCTGCCGGCCCGCTATCTGTCCGGGCCGGCCCGTTTGCAACTATGGTTTTTAACCTTCAAAATGGGGTTAAAAATTGGCTAAAAACACGACAAAATTGCTCGAAAATGATCGGAAGAGGACAACATTTTGAAGAAAAAAATCCGGAAATTCTAGAAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGGGACTATATCAAAACTAAAA</pcr_primer_p1>
		<pcr_primer_p2>TCTCTTGGTTCCTTTTCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>224</pcr_amplicon_size>
		<canonical_amplicon>GGGGGACTATATCAAAACTAAAAAGTGGGAATATATCTAATTAGATGTATTCCAATCAAAACGAAGAAACACACGACCACATTCTAATTCCATGTCTTGCGGCACTGTCTCCATCCACTCGAAATGGAGAGAGTGCATTGCAARAGAAATTAGGCTCCGCCCCCTACTCTCTGCGGATAGAGAGGGACCCGTGAAGAGACGCGCAGAGAAAAGGAACCAAGAGAACCAGGCCCGGAGGCCCGGTCGGCCCGGAAGTTTACCGCGAACCTCAAAATCTTGAGCGAAAAGTTGAATCATTGTTTCGAAGAAAGGTATTCAGTGTTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GGGGGACTATATCAAAACTAAAAAGTGGGAATATATCTAATTAGATGTATTCCAATCAAAACGAAGAAACACACGACCACATTCTAATTCCATGTCTTGCGGCACTGTCTCCATCCACTCGAAATGGAGAGAGTGCATTGCAARAGAAATTAGGCTCCGCCCCCTACTCTCTGCGGATAGAGAGGGACCCGTGAAGAGACGCGCAGAGAAAAGGAACCAAGAGAACCAGGCCCGGAGGCCCGGTCGGCCCGGAAGTTTACCGCGAACCTCAAAATCTTGAGCGAAAAGTTGAATCATTGTTTCGAAAAAAGGTATTCAGTGTTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29193</snp_id>
        <super_contig>c004400954.Contig1</super_contig>
        <contig_pos>955</contig_pos>
        <strand>+</strand>
        <context>ATGATCGGAA[A/G]AGGACRACAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTTAAAAATTGGCTAAAAACACGACAAAATTGCTCGAAAATGATCGGAA</left_flank>
        <right_flank>AGGACAACATTTTGAAGAAAAAAATCCGGAAATTCTAGAAAAAAAACTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAACCTCAAAATCTTGAGCGAAAAGTTGAATCATTGTTTCGAAAAAAGGTATTCAGTGTTTTTTTCTTCGAGTTATTTTTCAATACATTCTAAAAATCAATAAATTCATTTTCAAAAACAAAAACAAAATTCAAAAACAAAAATTCATTATTCAAAAATTTTGTTTTTTTTTTTCTGCCGGGCCCTGAAAATTTTCTCTCAACCCGGCCCGGCCCGGGCCGGGCGGGCCGGGCCGAACCCGGGCCGGGCCGAAATTTCACAAGTATGGAGATTATGAGCTTGGGAGCTTGGGAGCTTCCGTAAGGTAAAGTTAAGATGGACCTCGTCGAGATCTATCATTTGATATCAAATCCGTCAAAATATCTGGTTCTGAAGCCGAGTTATCTGCCGGCCCGCTATCTGTCCGGGCCGGCCCGTTTGCAACTATGGTTTTTAACCTTCAAAATGGGGTTAAAAATTGGCTAAAAACACGACAAAATTGCTCGAAAATGATCGGAAGAGGACAACATTTTGAAGAAAAAAATCCGGAAATTCTAGAAAAAAAACTTTTGCTGAATTTTTAAGGTTTAGGAAAAACCGAAAAAGGGCAAAAAACGGAAGCCCTTAGAAGCAAAAAAAAAACCACGGAAATGCGTATCTAACTACGGTAGAAATCTCAGAATCCCCACTAAAACGAATCTCTAATCAAGAAACGAAACGAAACACGGGGGACTATATCAAAACTAAAAAGTGGGAATATATCTAATTAGATGTATTCCAATCAAAACGAAGAAACACACGACCACATTCTAATTCCATGTCTTGCGGCACTGTCTCCATCCACTCGAAATGGAGAGAGTGCATTGCAAGAGAAATTAGGCTCCGCCCCCTACTCTCTGCGGATAGAGAGGGACCCGTGAAGAGACGCGCAGAGAAAAGGAACCAAGAGAACAAGAGGAAACAGCTGGGACACAGTTCTGGGAGCAACTTTTTGTGAGCAAGTATTTGGGTCAATTGTCT</canonical>
            <polymorphic>CGAACCTCAAAATCTTGAGCGAAAAGTTGAATCATTGTTTCGAAAAAAGGTATTCAGTGTTTTTTTCTTCGAGTTATTTTTCAATACATTCTAAAAATCAATAAATTCATTTTCAAAAACAAAAACAAAATTCAAAAACAAAAATTCATTATTCAAAAATTTTGTTTTTTTTTTTCTGCCGGGCCCTGAAAATTTTCTCTCAACCCGGCCCGGCCCGGGCCGGGCGGGCCGGGCCGAACCCGGGCCGGGCCGAAATTTCACAAGTATGGAGATTATGAGCTTGGGAGCTTGGGAGCTTCCGTAAGGTAAAGTTAAGATGGACCTCGTCGAGATCTATCATTTGATATCAAATCCGTCAAAATATCTGGTTCTGAAGCCGAGTTATCTGCCGGCCCGCTATCTGTCCGGGCCGGCCCGTTTGCAACTATGGTTTTTAACCTTCAAAATGGGGTTAAAAATTGGCTAAAAACACGACAAAATTGCTCGAAAATGATCGGAARAGGACAACATTTTGAAGAAAAAAATCCGGAAATTCTAGAAAAAAAACTTTTGCTGAATTTTTAAGGTTTAGGAAAAACCGAAAAAGGGCAAAAAACGGAAGCCCTTAGAAGCAAAAAAAAAACCACGGAAATGCGTATCTAACTACGGTAGAAATCTCAGAATCCCCACTAAAACGAATCTCTAATCAAGAAACGAAACGAAACACGGGGGACTATATCAAAACTAAAAAGTGGGAATATATCTAATTAGATGTATTCCAATCAAAACGAAGAAACACACGACCACATTCTAATTCCATGTCTTGCGGCACTGTCTCCATCCACTCGAAATGGAGAGAGTGCATTGCAAGAGAAATTAGGCTCCGCCCCCTACTCTCTGCGGATAGAGAGGGACCCGTGAAGAGACGCGCAGAGAAAAGGAACCAAGAGAACAAGAGGAAACAGCTGGGACACAGTTCTGGGAGCAACTTTTTGTGAGCAAGTATTTGGGTCAATTGTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTCGTCGAGATCTATCATT</pcr_primer_p1>
		<pcr_primer_p2>TAAACCTTAAAAATTCAGCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCTCGTCGAGATCTATCATTTGATATCAAATCCGTCAAAATATCTGGTTCTGAAGCCGAGTTATCTGCCGGCCCGCTATCTGTCCGGGCCGGCCCGTTTGCAACTATGGTTTTTAACCTTCAAAATGGGGTTAAAAATTGGCTAAAAACACGACAAAATTGCTCGAAAATGATCGGAAGAGGACAACATTTTGAAGAAAAAAATCCGGAAATTCTAGAAAAAAAACTTTTGCTGAATTTTTAAGGTTTA</canonical_amplicon>
		<polymorphic_amplicon>ACCTCGTCGAGATCTATCATTTGATATCAAATCCGTCAAAATATCTGGTTCTGAAGCCGAGTTATCTGCCGGCCCGCTATCTGTCCGGGCCGGCCCGTTTGCAACTATGGTTTTTAACCTTCAAAATGGGGTTAAAAATTGGCTAAAAACACGACAAAATTGCTCGAAAATGATCGGAARAGGACAACATTTTGAAGAAAAAAATCCGGAAATTCTAGAAAAAAAACTTTTGCTGAATTTTTAAGGTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29194</snp_id>
        <super_contig>c004400954.Contig1</super_contig>
        <contig_pos>961</contig_pos>
        <strand>+</strand>
        <context>GGAARAGGAC[A/G]ACATTTTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTGGCTAAAAACACGACAAAATTGCTCGAAAATGATCGGAAGAGGAC</left_flank>
        <right_flank>ACATTTTGAAGAAAAAAATCCGGAAATTCTAGAAAAAAAACTTTTGCTGA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAATCTTGAGCGAAAAGTTGAATCATTGTTTCGAAAAAAGGTATTCAGTGTTTTTTTCTTCGAGTTATTTTTCAATACATTCTAAAAATCAATAAATTCATTTTCAAAAACAAAAACAAAATTCAAAAACAAAAATTCATTATTCAAAAATTTTGTTTTTTTTTTTCTGCCGGGCCCTGAAAATTTTCTCTCAACCCGGCCCGGCCCGGGCCGGGCGGGCCGGGCCGAACCCGGGCCGGGCCGAAATTTCACAAGTATGGAGATTATGAGCTTGGGAGCTTGGGAGCTTCCGTAAGGTAAAGTTAAGATGGACCTCGTCGAGATCTATCATTTGATATCAAATCCGTCAAAATATCTGGTTCTGAAGCCGAGTTATCTGCCGGCCCGCTATCTGTCCGGGCCGGCCCGTTTGCAACTATGGTTTTTAACCTTCAAAATGGGGTTAAAAATTGGCTAAAAACACGACAAAATTGCTCGAAAATGATCGGAAGAGGACAACATTTTGAAGAAAAAAATCCGGAAATTCTAGAAAAAAAACTTTTGCTGAATTTTTAAGGTTTAGGAAAAACCGAAAAAGGGCAAAAAACGGAAGCCCTTAGAAGCAAAAAAAAAACCACGGAAATGCGTATCTAACTACGGTAGAAATCTCAGAATCCCCACTAAAACGAATCTCTAATCAAGAAACGAAACGAAACACGGGGGACTATATCAAAACTAAAAAGTGGGAATATATCTAATTAGATGTATTCCAATCAAAACGAAGAAACACACGACCACATTCTAATTCCATGTCTTGCGGCACTGTCTCCATCCACTCGAAATGGAGAGAGTGCATTGCAAGAGAAATTAGGCTCCGCCCCCTACTCTCTGCGGATAGAGAGGGACCCGTGAAGAGACGCGCAGAGAAAAGGAACCAAGAGAACAAGAGGAAACAGCTGGGACACAGTTCTGGGAGCAACTTTTTGTGAGCAAGTATTTGGGTCAATTGTCTAGACGG</canonical>
            <polymorphic>TCAAAATCTTGAGCGAAAAGTTGAATCATTGTTTCGAAAAAAGGTATTCAGTGTTTTTTTCTTCGAGTTATTTTTCAATACATTCTAAAAATCAATAAATTCATTTTCAAAAACAAAAACAAAATTCAAAAACAAAAATTCATTATTCAAAAATTTTGTTTTTTTTTTTCTGCCGGGCCCTGAAAATTTTCTCTCAACCCGGCCCGGCCCGGGCCGGGCGGGCCGGGCCGAACCCGGGCCGGGCCGAAATTTCACAAGTATGGAGATTATGAGCTTGGGAGCTTGGGAGCTTCCGTAAGGTAAAGTTAAGATGGACCTCGTCGAGATCTATCATTTGATATCAAATCCGTCAAAATATCTGGTTCTGAAGCCGAGTTATCTGCCGGCCCGCTATCTGTCCGGGCCGGCCCGTTTGCAACTATGGTTTTTAACCTTCAAAATGGGGTTAAAAATTGGCTAAAAACACGACAAAATTGCTCGAAAATGATCGGAAGAGGACRACATTTTGAAGAAAAAAATCCGGAAATTCTAGAAAAAAAACTTTTGCTGAATTTTTAAGGTTTAGGAAAAACCGAAAAAGGGCAAAAAACGGAAGCCCTTAGAAGCAAAAAAAAAACCACGGAAATGCGTATCTAACTACGGTAGAAATCTCAGAATCCCCACTAAAACGAATCTCTAATCAAGAAACGAAACGAAACACGGGGGACTATATCAAAACTAAAAAGTGGGAATATATCTAATTAGATGTATTCCAATCAAAACGAAGAAACACACGACCACATTCTAATTCCATGTCTTGCGGCACTGTCTCCATCCACTCGAAATGGAGAGAGTGCATTGCAAGAGAAATTAGGCTCCGCCCCCTACTCTCTGCGGATAGAGAGGGACCCGTGAAGAGACGCGCAGAGAAAAGGAACCAAGAGAACAAGAGGAAACAGCTGGGACACAGTTCTGGGAGCAACTTTTTGTGAGCAAGTATTTGGGTCAATTGTCTAGACGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTAAAAATTGGCTAAAAACAC</pcr_primer_p1>
		<pcr_primer_p2>TTTCGTTTCTTGATTAGAGATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTTAAAAATTGGCTAAAAACACGACAAAATTGCTCGAAAATGATCGGAAGAGGACAACATTTTGAAGAAAAAAATCCGGAAATTCTAGAAAAAAAACTTTTGCTGAATTTTTAAGGTTTAGGAAAAACCGAAAAAGGGCAAAAAACGGAAGCCCTTAGAAGCAAAAAAAAAACCACGGAAATGCGTATCTAACTACGGTAGAAATCTCAGAATCCCCACTAAAACGAATCTCTAATCAAGAAACGAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTTAAAAATTGGCTAAAAACACGACAAAATTGCTCGAAAATGATCGGAAGAGGACRACATTTTGAAGAAAAAAATCCGGAAATTCTAGAAAAAAAACTTTTGCTGAATTTTTAAGGTTTAGGAAAAACCGAAAAAGGGCAAAAAACGGAAGCCCTTAGAAGCAAAAAAAAAACCACGGAAATGCGTATCTAACTACGGTAGAAATCTCAGAATCCCCACTAAAACGAATCTCTAATCAAGAAACGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29195</snp_id>
        <super_contig>c004400954.Contig1</super_contig>
        <contig_pos>1305</contig_pos>
        <strand></strand>
        <context>TGCATTGCAA[G/A]AGAAATTAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTCTTGCGGCACTGTCTCCATCCACTCGAAATGGAGAGAGTGCATTGCAA</left_flank>
        <right_flank>AGAAATTAGGCTCCGCCCCCTACTCTCTGCGGATAGAGAGGGACCCGTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCGTCAAAATATCTGGTTCTGAAGCCGAGTTATCTGCCGGCCCGCTATCTGTCCGGGCCGGCCCGTTTGCAACTATGGTTTTTAACCTTCAAAATGGGGTTAAAAATTGGCTAAAAACACGACAAAATTGCTCGAAAATGATCGGAAGAGGACAACATTTTGAAGAAAAAAATCCGGAAATTCTAGAAAAAAAACTTTTGCTGAATTTTTAAGGTTTAGGAAAAACCGAAAAAGGGCAAAAAACGGAAGCCCTTAGAAGCAAAAAAAAAACCACGGAAATGCGTATCTAACTACGGTAGAAATCTCAGAATCCCCACTAAAACGAATCTCTAATCAAGAAACGAAACGAAACACGGGGGACTATATCAAAACTAAAAAGTGGGAATATATCTAATTAGATGTATTCCAATCAAAACGAAGAAACACACGACCACATTCTAATTCCATGTCTTGCGGCACTGTCTCCATCCACTCGAAATGGAGAGAGTGCATTGCAAGAGAAATTAGGCTCCGCCCCCTACTCTCTGCGGATAGAGAGGGACCCGTGAAGAGACGCGCAGAGAAAAGGAACCAAGAGAACAAGAGGAAACAGCTGGGACACAGTTCTGGGAGCAACTTTTTGTGAGCAAGTATTTGGGTCAATTGTCTAGACGGGAAAAAAATTGTGTTGCACATTTTTTTTGAAAATTCTTACAAGATCTCGCATATCAGTGAAAGTTGGTGTCTAGGTCACGCAATAGTGAAAGTCCCTAAGACTAGAATTGCATAGTTCGGGTTACTGTAGAAGATCATTCTCAATTAGATGAGCTATTTCTACAGTAACCCATGCAGCTAGAACTTCGAAGTATTTGCTCCAATAATAGCCCCATCCAAGCTGTCATATTTGAGCTCAATTATCTCGGTTCCTTTGTGAGATATCCAAATTTTGTCAACTGATAAAATCTGCGTCATAAGATAAGCTTTGTTTTATCAGTTGACAAATTTTTGATATCTCTTAC</canonical>
            <polymorphic>ATCCGTCAAAATATCTGGTTCTGAAGCCGAGTTATCTGCCGGCCCGCTATCTGTCCGGGCCGGCCCGTTTGCAACTATGGTTTTTAACCTTCAAAATGGGGTTAAAAATTGGCTAAAAACACGACAAAATTGCTCGAAAATGATCGGAAGAGGACAACATTTTGAAGAAAAAAATCCGGAAATTCTAGAAAAAAAACTTTTGCTGAATTTTTAAGGTTTAGGAAAAACCGAAAAAGGGCAAAAAACGGAAGCCCTTAGAAGCAAAAAAAAAACCACGGAAATGCGTATCTAACTACGGTAGAAATCTCAGAATCCCCACTAAAACGAATCTCTAATCAAGAAACGAAACGAAACACGGGGGACTATATCAAAACTAAAAAGTGGGAATATATCTAATTAGATGTATTCCAATCAAAACGAAGAAACACACGACCACATTCTAATTCCATGTCTTGCGGCACTGTCTCCATCCACTCGAAATGGAGAGAGTGCATTGCAARAGAAATTAGGCTCCGCCCCCTACTCTCTGCGGATAGAGAGGGACCCGTGAAGAGACGCGCAGAGAAAAGGAACCAAGAGAACAAGAGGAAACAGCTGGGACACAGTTCTGGGAGCAACTTTTTGTGAGCAAGTATTTGGGTCAATTGTCTAGACGGGAAAAAAATTGTGTTGCACATTTTTTTTGAAAATTCTTACAAGATCTCGCATATCAGTGAAAGTTGGTGTCTAGGTCACGCAATAGTGAAAGTCCCTAAGACTAGAATTGCATAGTTCGGGTTACTGTAGAAGATCATTCTCAATTAGATGAGCTATTTCTACAGTAACCCATGCAGCTAGAACTTCGAAGTATTTGCTCCAATAATAGCCCCATCCAAGCTGTCATATTTGAGCTCAATTATCTCGGTTCCTTTGTGAGATATCCAAATTTTGTCAACTGATAAAATCTGCGTCATAAGATAAGCTTTGTTTTATCAGTTGACAAATTTTTGATATCTCTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGGGACTATATCAAAACTAAAA</pcr_primer_p1>
		<pcr_primer_p2>GCTGTTTCCTCTTGTTCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GGGGGACTATATCAAAACTAAAAAGTGGGAATATATCTAATTAGATGTATTCCAATCAAAACGAAGAAACACACGACCACATTCTAATTCCATGTCTTGCGGCACTGTCTCCATCCACTCGAAATGGAGAGAGTGCATTGCAAGAGAAATTAGGCTCCGCCCCCTACTCTCTGCGGATAGAGAGGGACCCGTGAAGAGACGCGCAGAGAAAAGGAACCAAGAGAACAAGAGGAAACAGC</canonical_amplicon>
		<polymorphic_amplicon>GGGGGACTATATCAAAACTAAAAAGTGGGAATATATCTAATTAGATGTATTCCAATCAAAACGAAGAAACACACGACCACATTCTAATTCCATGTCTTGCGGCACTGTCTCCATCCACTCGAAATGGAGAGAGTGCATTGCAARAGAAATTAGGCTCCGCCCCCTACTCTCTGCGGATAGAGAGGGACCCGTGAAGAGACGCGCAGAGAAAAGGAACCAAGAGAACAAGAGGAAACAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29196</snp_id>
        <super_contig>c004400954.Contig1</super_contig>
        <contig_pos>1427</contig_pos>
        <strand>+</strand>
        <context>GAGCAACTTT[C/T]TGTGAGCAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCAAGAGAACAAGAGGAAACAGCTGGGACACAGTTCTGGGAGCAACTTT</left_flank>
        <right_flank>TGTGAGCAAGTATTTGGGTCAATTGTCTAGACGGGAAAAAAATTGTGTTG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACAAAATTGCTCGAAAATGATCGGAAGAGGACAACATTTTGAAGAAAAAAATCCGGAAATTCTAGAAAAAAAACTTTTGCTGAATTTTTAAGGTTTAGGAAAAACCGAAAAAGGGCAAAAAACGGAAGCCCTTAGAAGCAAAAAAAAAACCACGGAAATGCGTATCTAACTACGGTAGAAATCTCAGAATCCCCACTAAAACGAATCTCTAATCAAGAAACGAAACGAAACACGGGGGACTATATCAAAACTAAAAAGTGGGAATATATCTAATTAGATGTATTCCAATCAAAACGAAGAAACACACGACCACATTCTAATTCCATGTCTTGCGGCACTGTCTCCATCCACTCGAAATGGAGAGAGTGCATTGCAAGAGAAATTAGGCTCCGCCCCCTACTCTCTGCGGATAGAGAGGGACCCGTGAAGAGACGCGCAGAGAAAAGGAACCAAGAGAACAAGAGGAAACAGCTGGGACACAGTTCTGGGAGCAACTTTTTGTGAGCAAGTATTTGGGTCAATTGTCTAGACGGGAAAAAAATTGTGTTGCACATTTTTTTTGAAAATTCTTACAAGATCTCGCATATCAGTGAAAGTTGGTGTCTAGGTCACGCAATAGTGAAAGTCCCTAAGACTAGAATTGCATAGTTCGGGTTACTGTAGAAGATCATTCTCAATTAGATGAGCTATTTCTACAGTAACCCATGCAGCTAGAACTTCGAAGTATTTGCTCCAATAATAGCCCCATCCAAGCTGTCATATTTGAGCTCAATTATCTCGGTTCCTTTGTGAGATATCCAAATTTTGTCAACTGATAAAATCTGCGTCATAAGATAAGCTTTGTTTTATCAGTTGACAAATTTTTGATATCTCTTACAGTAACCGAGATAATTGAGCCTAAAGTTGGTGGTTTGAGTGGGTCTCTACTAGAGCAAATGCGAGACTTTAATTTTCAAATTTCGCGTTATTTGTTGTATTTCAGACAAACAAGGAGTTTTA</canonical>
            <polymorphic>GACAAAATTGCTCGAAAATGATCGGAAGAGGACAACATTTTGAAGAAAAAAATCCGGAAATTCTAGAAAAAAAACTTTTGCTGAATTTTTAAGGTTTAGGAAAAACCGAAAAAGGGCAAAAAACGGAAGCCCTTAGAAGCAAAAAAAAAACCACGGAAATGCGTATCTAACTACGGTAGAAATCTCAGAATCCCCACTAAAACGAATCTCTAATCAAGAAACGAAACGAAACACGGGGGACTATATCAAAACTAAAAAGTGGGAATATATCTAATTAGATGTATTCCAATCAAAACGAAGAAACACACGACCACATTCTAATTCCATGTCTTGCGGCACTGTCTCCATCCACTCGAAATGGAGAGAGTGCATTGCAAGAGAAATTAGGCTCCGCCCCCTACTCTCTGCGGATAGAGAGGGACCCGTGAAGAGACGCGCAGAGAAAAGGAACCAAGAGAACAAGAGGAAACAGCTGGGACACAGTTCTGGGAGCAACTTTYTGTGAGCAAGTATTTGGGTCAATTGTCTAGACGGGAAAAAAATTGTGTTGCACATTTTTTTTGAAAATTCTTACAAGATCTCGCATATCAGTGAAAGTTGGTGTCTAGGTCACGCAATAGTGAAAGTCCCTAAGACTAGAATTGCATAGTTCGGGTTACTGTAGAAGATCATTCTCAATTAGATGAGCTATTTCTACAGTAACCCATGCAGCTAGAACTTCGAAGTATTTGCTCCAATAATAGCCCCATCCAAGCTGTCATATTTGAGCTCAATTATCTCGGTTCCTTTGTGAGATATCCAAATTTTGTCAACTGATAAAATCTGCGTCATAAGATAAGCTTTGTTTTATCAGTTGACAAATTTTTGATATCTCTTACAGTAACCGAGATAATTGAGCCTAAAGTTGGTGGTTTGAGTGGGTCTCTACTAGAGCAAATGCGAGACTTTAATTTTCAAATTTCGCGTTATTTGTTGTATTTCAGACAAACAAGGAGTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTCGAAATGGAGAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>AACTTTCACTGATATGCGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACTCGAAATGGAGAGAGTGCATTGCAAGAGAAATTAGGCTCCGCCCCCTACTCTCTGCGGATAGAGAGGGACCCGTGAAGAGACGCGCAGAGAAAAGGAACCAAGAGAACAAGAGGAAACAGCTGGGACACAGTTCTGGGAGCAACTTTTTGTGAGCAAGTATTTGGGTCAATTGTCTAGACGGGAAAAAAATTGTGTTGCACATTTTTTTTGAAAATTCTTACAAGATCTCGCATATCAGTGAAAGTT</canonical_amplicon>
		<polymorphic_amplicon>CACTCGAAATGGAGAGAGTGCATTGCAAGAGAAATTAGGCTCCGCCCCCTACTCTCTGCGGATAGAGAGGGACCCGTGAAGAGACGCGCAGAGAAAAGGAACCAAGAGAACAAGAGGAAACAGCTGGGACACAGTTCTGGGAGCAACTTTYTGTGAGCAAGTATTTGGGTCAATTGTCTAGACGGGAAAAAAATTGTGTTGCACATTTTTTTTGAAAATTCTTACAAGATCTCGCATATCAGTGAAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29197</snp_id>
        <super_contig>c004400954.Contig1</super_contig>
        <contig_pos>1439</contig_pos>
        <strand>+</strand>
        <context>GTGAGCAAGT[A/C]TTTGGGTCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAGGAAACAGCTGGGACACAGTTCTGGGAGCAACTTTTTGTGAGCAAGT</left_flank>
        <right_flank>TTTGGGTCAATTGTCTAGACGGGAAAAAAATTGTGTTGCACATTTTTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAAAATGATCGGAAGAGGACAACATTTTGAAGAAAAAAATCCGGAAATTCTAGAAAAAAAACTTTTGCTGAATTTTTAAGGTTTAGGAAAAACCGAAAAAGGGCAAAAAACGGAAGCCCTTAGAAGCAAAAAAAAAACCACGGAAATGCGTATCTAACTACGGTAGAAATCTCAGAATCCCCACTAAAACGAATCTCTAATCAAGAAACGAAACGAAACACGGGGGACTATATCAAAACTAAAAAGTGGGAATATATCTAATTAGATGTATTCCAATCAAAACGAAGAAACACACGACCACATTCTAATTCCATGTCTTGCGGCACTGTCTCCATCCACTCGAAATGGAGAGAGTGCATTGCAAGAGAAATTAGGCTCCGCCCCCTACTCTCTGCGGATAGAGAGGGACCCGTGAAGAGACGCGCAGAGAAAAGGAACCAAGAGAACAAGAGGAAACAGCTGGGACACAGTTCTGGGAGCAACTTTTTGTGAGCAAGTATTTGGGTCAATTGTCTAGACGGGAAAAAAATTGTGTTGCACATTTTTTTTGAAAATTCTTACAAGATCTCGCATATCAGTGAAAGTTGGTGTCTAGGTCACGCAATAGTGAAAGTCCCTAAGACTAGAATTGCATAGTTCGGGTTACTGTAGAAGATCATTCTCAATTAGATGAGCTATTTCTACAGTAACCCATGCAGCTAGAACTTCGAAGTATTTGCTCCAATAATAGCCCCATCCAAGCTGTCATATTTGAGCTCAATTATCTCGGTTCCTTTGTGAGATATCCAAATTTTGTCAACTGATAAAATCTGCGTCATAAGATAAGCTTTGTTTTATCAGTTGACAAATTTTTGATATCTCTTACAGTAACCGAGATAATTGAGCCTAAAGTTGGTGGTTTGAGTGGGTCTCTACTAGAGCAAATGCGAGACTTTAATTTTCAAATTTCGCGTTATTTGTTGTATTTCAGACAAACAAGGAGTTTTAGCATAAGCCTAT</canonical>
            <polymorphic>CGAAAATGATCGGAAGAGGACAACATTTTGAAGAAAAAAATCCGGAAATTCTAGAAAAAAAACTTTTGCTGAATTTTTAAGGTTTAGGAAAAACCGAAAAAGGGCAAAAAACGGAAGCCCTTAGAAGCAAAAAAAAAACCACGGAAATGCGTATCTAACTACGGTAGAAATCTCAGAATCCCCACTAAAACGAATCTCTAATCAAGAAACGAAACGAAACACGGGGGACTATATCAAAACTAAAAAGTGGGAATATATCTAATTAGATGTATTCCAATCAAAACGAAGAAACACACGACCACATTCTAATTCCATGTCTTGCGGCACTGTCTCCATCCACTCGAAATGGAGAGAGTGCATTGCAAGAGAAATTAGGCTCCGCCCCCTACTCTCTGCGGATAGAGAGGGACCCGTGAAGAGACGCGCAGAGAAAAGGAACCAAGAGAACAAGAGGAAACAGCTGGGACACAGTTCTGGGAGCAACTTTTTGTGAGCAAGTMTTTGGGTCAATTGTCTAGACGGGAAAAAAATTGTGTTGCACATTTTTTTTGAAAATTCTTACAAGATCTCGCATATCAGTGAAAGTTGGTGTCTAGGTCACGCAATAGTGAAAGTCCCTAAGACTAGAATTGCATAGTTCGGGTTACTGTAGAAGATCATTCTCAATTAGATGAGCTATTTCTACAGTAACCCATGCAGCTAGAACTTCGAAGTATTTGCTCCAATAATAGCCCCATCCAAGCTGTCATATTTGAGCTCAATTATCTCGGTTCCTTTGTGAGATATCCAAATTTTGTCAACTGATAAAATCTGCGTCATAAGATAAGCTTTGTTTTATCAGTTGACAAATTTTTGATATCTCTTACAGTAACCGAGATAATTGAGCCTAAAGTTGGTGGTTTGAGTGGGTCTCTACTAGAGCAAATGCGAGACTTTAATTTTCAAATTTCGCGTTATTTGTTGTATTTCAGACAAACAAGGAGTTTTAGCATAAGCCTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAGAACAAGAGGAAACAGC</pcr_primer_p1>
		<pcr_primer_p2>GGGTTACTGTAGAAATAGCTCATC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAGAGAACAAGAGGAAACAGCTGGGACACAGTTCTGGGAGCAACTTTTTGTGAGCAAGTATTTGGGTCAATTGTCTAGACGGGAAAAAAATTGTGTTGCACATTTTTTTTGAAAATTCTTACAAGATCTCGCATATCAGTGAAAGTTGGTGTCTAGGTCACGCAATAGTGAAAGTCCCTAAGACTAGAATTGCATAGTTCGGGTTACTGTAGAAGATCATTCTCAATTAGATGAGCTATTTCTACAGTAACCC</canonical_amplicon>
		<polymorphic_amplicon>AAGAGAACAAGAGGAAACAGCTGGGACACAGTTCTGGGAGCAACTTTTTGTGAGCAAGTMTTTGGGTCAATTGTCTAGACGGGAAAAAAATTGTGTTGCACATTTTTTTTGAAAATTCTTACAAGATCTCGCATATCAGTGAAAGTTGGTGTCTAGGTCACGCAATAGTGAAAGTCCCTAAGACTAGAATTGCATAGTTCGGGTTACTGTAGAAGATCATTCTCAATTAGATGAGCTATTTCTACAGTAACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29198</snp_id>
        <super_contig>c004400954.Contig1</super_contig>
        <contig_pos>1481</contig_pos>
        <strand>+</strand>
        <context>TGTGTTGCAC[A/T]TTTTTTTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGCAAGTATTTGGGTCAATTGTCTAGACGGGAAAAAAATTGTGTTGCAC</left_flank>
        <right_flank>TTTTTTTTGAAAATTCTTACAAGATCTCGCATATCAGTGAAAGTTGGTGT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGAAATTCTAGAAAAAAAACTTTTGCTGAATTTTTAAGGTTTAGGAAAAACCGAAAAAGGGCAAAAAACGGAAGCCCTTAGAAGCAAAAAAAAAACCACGGAAATGCGTATCTAACTACGGTAGAAATCTCAGAATCCCCACTAAAACGAATCTCTAATCAAGAAACGAAACGAAACACGGGGGACTATATCAAAACTAAAAAGTGGGAATATATCTAATTAGATGTATTCCAATCAAAACGAAGAAACACACGACCACATTCTAATTCCATGTCTTGCGGCACTGTCTCCATCCACTCGAAATGGAGAGAGTGCATTGCAAGAGAAATTAGGCTCCGCCCCCTACTCTCTGCGGATAGAGAGGGACCCGTGAAGAGACGCGCAGAGAAAAGGAACCAAGAGAACAAGAGGAAACAGCTGGGACACAGTTCTGGGAGCAACTTTTTGTGAGCAAGTATTTGGGTCAATTGTCTAGACGGGAAAAAAATTGTGTTGCACATTTTTTTTGAAAATTCTTACAAGATCTCGCATATCAGTGAAAGTTGGTGTCTAGGTCACGCAATAGTGAAAGTCCCTAAGACTAGAATTGCATAGTTCGGGTTACTGTAGAAGATCATTCTCAATTAGATGAGCTATTTCTACAGTAACCCATGCAGCTAGAACTTCGAAGTATTTGCTCCAATAATAGCCCCATCCAAGCTGTCATATTTGAGCTCAATTATCTCGGTTCCTTTGTGAGATATCCAAATTTTGTCAACTGATAAAATCTGCGTCATAAGATAAGCTTTGTTTTATCAGTTGACAAATTTTTGATATCTCTTACAGTAACCGAGATAATTGAGCCTAAAGTTGGTGGTTTGAGTGGGTCTCTACTAGAGCAAATGCGAGACTTTAATTTTCAAATTTCGCGTTATTTGTTGTATTTCAGACAAACAAGGAGTTTTAGCATAAGCCTATAATTTTGACTACATTGTTACTTCATTCAAAATTATAGACATT</canonical>
            <polymorphic>CGGAAATTCTAGAAAAAAAACTTTTGCTGAATTTTTAAGGTTTAGGAAAAACCGAAAAAGGGCAAAAAACGGAAGCCCTTAGAAGCAAAAAAAAAACCACGGAAATGCGTATCTAACTACGGTAGAAATCTCAGAATCCCCACTAAAACGAATCTCTAATCAAGAAACGAAACGAAACACGGGGGACTATATCAAAACTAAAAAGTGGGAATATATCTAATTAGATGTATTCCAATCAAAACGAAGAAACACACGACCACATTCTAATTCCATGTCTTGCGGCACTGTCTCCATCCACTCGAAATGGAGAGAGTGCATTGCAAGAGAAATTAGGCTCCGCCCCCTACTCTCTGCGGATAGAGAGGGACCCGTGAAGAGACGCGCAGAGAAAAGGAACCAAGAGAACAAGAGGAAACAGCTGGGACACAGTTCTGGGAGCAACTTTTTGTGAGCAAGTATTTGGGTCAATTGTCTAGACGGGAAAAAAATTGTGTTGCACWTTTTTTTTGAAAATTCTTACAAGATCTCGCATATCAGTGAAAGTTGGTGTCTAGGTCACGCAATAGTGAAAGTCCCTAAGACTAGAATTGCATAGTTCGGGTTACTGTAGAAGATCATTCTCAATTAGATGAGCTATTTCTACAGTAACCCATGCAGCTAGAACTTCGAAGTATTTGCTCCAATAATAGCCCCATCCAAGCTGTCATATTTGAGCTCAATTATCTCGGTTCCTTTGTGAGATATCCAAATTTTGTCAACTGATAAAATCTGCGTCATAAGATAAGCTTTGTTTTATCAGTTGACAAATTTTTGATATCTCTTACAGTAACCGAGATAATTGAGCCTAAAGTTGGTGGTTTGAGTGGGTCTCTACTAGAGCAAATGCGAGACTTTAATTTTCAAATTTCGCGTTATTTGTTGTATTTCAGACAAACAAGGAGTTTTAGCATAAGCCTATAATTTTGACTACATTGTTACTTCATTCAAAATTATAGACATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAGAACAAGAGGAAACAGC</pcr_primer_p1>
		<pcr_primer_p2>GGGTTACTGTAGAAATAGCTCATC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAGAGAACAAGAGGAAACAGCTGGGACACAGTTCTGGGAGCAACTTTTTGTGAGCAAGTATTTGGGTCAATTGTCTAGACGGGAAAAAAATTGTGTTGCACATTTTTTTTGAAAATTCTTACAAGATCTCGCATATCAGTGAAAGTTGGTGTCTAGGTCACGCAATAGTGAAAGTCCCTAAGACTAGAATTGCATAGTTCGGGTTACTGTAGAAGATCATTCTCAATTAGATGAGCTATTTCTACAGTAACCC</canonical_amplicon>
		<polymorphic_amplicon>AAGAGAACAAGAGGAAACAGCTGGGACACAGTTCTGGGAGCAACTTTTTGTGAGCAAGTATTTGGGTCAATTGTCTAGACGGGAAAAAAATTGTGTTGCACWTTTTTTTTGAAAATTCTTACAAGATCTCGCATATCAGTGAAAGTTGGTGTCTAGGTCACGCAATAGTGAAAGTCCCTAAGACTAGAATTGCATAGTTCGGGTTACTGTAGAAGATCATTCTCAATTAGATGAGCTATTTCTACAGTAACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29199</snp_id>
        <super_contig>c004400954.Contig1</super_contig>
        <contig_pos>3851</contig_pos>
        <strand>+</strand>
        <context>CCATTTGGGC[C/T]TTTTTTTTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATGGGCGCTTTTTCCGGAATGAGTAATCCGGAAAACTTTCCATTTGGGC</left_flank>
        <right_flank>TTTTTTTTGGGTACCAGGTGGCCCCCAGGTGGACAAACTTTTTCCTTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATATTTTATCGGTTGACCAATTTGTGATATGTTTCAGAAGAACCTAGATAATTGAGCTCGAATTGCACTTATAGGGTGGGCTTTTATTGGAGCGTTTACAGTAGGAATTGGAGTTCATGAACGGACTCAGCAATCTTGATATTGCCACGTGGAAAAATCATCTTACGTATAGAGCTAAAATTCCGGCAATTTCCGGTCGCTTTTTTCAAAAATTGAATTTTTTCAAAAATTCAAAGCGTACCGGAACCCCAGCCACCCCCAACGAAAACACCTGCATTCTTTCCTCCCCCCAAACTAATAAATATTCAAATCCCCTCCTTATTTGTCAGTCGGCCTAACTTAGCGCGCGCGGCGCAAGTTCAAAGGAGACGACTCGTCGGAAGTATTTAGGGTGAATGAGACAAATTGGTTCCACTGCTGAATGGAGAGAGTTGGAACGCCCAAAATATATGGGCGCTTTTTCCGGAATGAGTAATCCGGAAAACTTTCCATTTGGGCTTTTTTTTTGGGTACCAGGTGGCCCCCAGGTGGACAAACTTTTTCCTTCTTTTTGTATAGGCAGGAAGGACAGATGCAAAATTTCGAAGATTCGAAATTTATCTATCCACCCAAATAATTGACAATTATAAATGACACGTGTCAGGCCGGATGGACATCTGGACGGTTGCCACCTGCGCGCCGTTGGCGATGGAGAAGAAGAAGAAGAACTTGAAATTCTGATAGGAGGGAGTCTTCTAAGGAGGCGGATATGAAGATAGTGTGATGTGTGTGTTATGGTTGTTAGGAAGGACGGGGAAACGAGTCAGGGAAGCTGATCTAGGCGGTGACCGTGGCCGAAGGTCCCAGCTACAGTAACCTAGAAATATTTTTCCGGATATTTTATCTCGATTTTTGTTACTGCAGTGGTCGTTGTACCAAAACCCGCCAAAAAAATCATGCAAAACTGTATAATGCAGATTTTTTTCTCTTGAATAGAGAGTAGAAATTACCACGGATCCC</canonical>
            <polymorphic>AATATTTTATCGGTTGACCAATTTGTGATATGTTTCAGAAGAACCTAGATAATTGAGCTCGAATTGCACTTATAGGGTGGGCTTTTATTGGAGCGTTTACAGTAGGAATTGGAGTTCATGAACGGACTCAGCAATCTTGATATTGCCACGTGGAAAAATCATCTTACGTATAGAGCTAAAATTCCGGCAATTTCCGGTCGCTTTTTTCAAAAATTGAATTTTTTCAAAAATTCAAAGCGTACCGGAACCCCAGCCACCCCCAACGAAAACACCTGCATTCTTTCCTCCCCCCAAACTAATAAATATTCAAATCCCCTCCTTATTTGTCAGTCGGCCTAACTTAGCGCGCGCGGCGCAAGTTCAAAGGAGACGACTCGTCGGAAGTATTTAGGGTGAATGAGACAAATTGGTTCCACTGCTGAATGGAGAGAGTTGGAACGCCCAAAATATATGGGCGCTTTTTCCGGAATGAGTAATCCGGAAAACTTTCCATTTGGGCYTTTTTTTTGGGTACCAGGTGGCCCCCAGGTGGACAAACTTTTTCCTTCTTTTTGTATAGGCAGGAAGGACAGATGCAAAATTTCGAAGATTCGAAATTTATCTATCCACCCAAATAATTGACAATTATAAATGACACGTGTCAGGCCGGATGGACATCTGGACGGTTGCCACCTGCGCGCCGTTGGCGATGGAGAAGAAGAAGAAGAACTTGAAATTCTGATAGGAGGGAGTCTTCTAAGGAGGCGGATATGAAGATAGTGTGATGTGTGTGTTATGGTTGTTAGGAAGGACGGGGAAACGAGTCAGGGAAGCTGATCTAGGCGGTGACCGTGGCCGAAGGTCCCAGCTACAGTAACCTAGAAATATTTTTCCGGATATTTTATCTCGATTTTTGTTACTGCAGTGGTCGTTGTACCAAAACCCGCCAAAAAAATCATGCAAAACTGTATAATGCAGATTTTTTTCTCTTGAATAGAGAGTAGAAATTACCACGGATCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>167 164 153 124 94 81 78 57 24 23 22 13</canonical_bands>
                <polymorphic_bands>187 167 153 124 94 81 78 57 24 22 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTCGTCGGAAGTATTTAGG</pcr_primer_p1>
		<pcr_primer_p2>TCAATTATTTGGGTGGATAGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACTCGTCGGAAGTATTTAGGGTGAATGAGACAAATTGGTTCCACTGCTGAATGGAGAGAGTTGGAACGCCCAAAATATATGGGCGCTTTTTCCGGAATGAGTAATCCGGAAAACTTTCCATTTGGGCTTTTTTTTTGGGTACCAGGTGGCCCCCAGGTGGACAAACTTTTTCCTTCTTTTTGTATAGGCAGGAAGGACAGATGCAAAATTTCGAAGATTCGAAATTTATCTATCCACCCAAATAATTGA</canonical_amplicon>
		<polymorphic_amplicon>GACTCGTCGGAAGTATTTAGGGTGAATGAGACAAATTGGTTCCACTGCTGAATGGAGAGAGTTGGAACGCCCAAAATATATGGGCGCTTTTTCCGGAATGAGTAATCCGGAAAACTTTCCATTTGGGCYTTTTTTTTGGGTACCAGGTGGCCCCCAGGTGGACAAACTTTTTCCTTCTTTTTGTATAGGCAGGAAGGACAGATGCAAAATTTCGAAGATTCGAAATTTATCTATCCACCCAAATAATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29200</snp_id>
        <super_contig>c004400954.Contig1</super_contig>
        <contig_pos>4092</contig_pos>
        <strand>+</strand>
        <context>GTCTTCTAAG[A/G]AGGCGGATAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAGAAGAAGAAGAAGAACTTGAAATTCTGATAGGAGGGAGTCTTCTAAG</left_flank>
        <right_flank>AGGCGGATATGAAGATAGTGTGATGTGTGTGTTATGGTTGTTAGGAAGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGGAACCCCAGCCACCCCCAACGAAAACACCTGCATTCTTTCCTCCCCCCAAACTAATAAATATTCAAATCCCCTCCTTATTTGTCAGTCGGCCTAACTTAGCGCGCGCGGCGCAAGTTCAAAGGAGACGACTCGTCGGAAGTATTTAGGGTGAATGAGACAAATTGGTTCCACTGCTGAATGGAGAGAGTTGGAACGCCCAAAATATATGGGCGCTTTTTCCGGAATGAGTAATCCGGAAAACTTTCCATTTGGGCTTTTTTTTTGGGTACCAGGTGGCCCCCAGGTGGACAAACTTTTTCCTTCTTTTTGTATAGGCAGGAAGGACAGATGCAAAATTTCGAAGATTCGAAATTTATCTATCCACCCAAATAATTGACAATTATAAATGACACGTGTCAGGCCGGATGGACATCTGGACGGTTGCCACCTGCGCGCCGTTGGCGATGGAGAAGAAGAAGAAGAACTTGAAATTCTGATAGGAGGGAGTCTTCTAAGGAGGCGGATATGAAGATAGTGTGATGTGTGTGTTATGGTTGTTAGGAAGGACGGGGAAACGAGTCAGGGAAGCTGATCTAGGCGGTGACCGTGGCCGAAGGTCCCAGCTACAGTAACCTAGAAATATTTTTCCGGATATTTTATCTCGATTTTTGTTACTGCAGTGGTCGTTGTACCAAAACCCGCCAAAAAAATCATGCAAAACTGTATAATGCAGATTTTTTTCTCTTGAATAGAGAGTAGAAATTACCACGGATCCCATCACTGCCAGTCACCATGAACGGCACGGTACCGCCGGTACCCCCAGAAATAGAAACCCGAATATATGCCAAATCTAAGCGAGTTGTTTTCCTAGCGAGACCCAGAAAACCACGTGGCGACGCACAGAAATTGAACATCTGTTGGCACGAATTCGCATGTTTTACCACCGAAACAAGAGAGGTGCGAAGTGCCTTCGATCTTGCAACTTATCGGAATTATGAGTACATAATTAGCGCGACC</canonical>
            <polymorphic>CCGGAACCCCAGCCACCCCCAACGAAAACACCTGCATTCTTTCCTCCCCCCAAACTAATAAATATTCAAATCCCCTCCTTATTTGTCAGTCGGCCTAACTTAGCGCGCGCGGCGCAAGTTCAAAGGAGACGACTCGTCGGAAGTATTTAGGGTGAATGAGACAAATTGGTTCCACTGCTGAATGGAGAGAGTTGGAACGCCCAAAATATATGGGCGCTTTTTCCGGAATGAGTAATCCGGAAAACTTTCCATTTGGGCTTTTTTTTTGGGTACCAGGTGGCCCCCAGGTGGACAAACTTTTTCCTTCTTTTTGTATAGGCAGGAAGGACAGATGCAAAATTTCGAAGATTCGAAATTTATCTATCCACCCAAATAATTGACAATTATAAATGACACGTGTCAGGCCGGATGGACATCTGGACGGTTGCCACCTGCGCGCCGTTGGCGATGGAGAAGAAGAAGAAGAACTTGAAATTCTGATAGGAGGGAGTCTTCTAAGRAGGCGGATATGAAGATAGTGTGATGTGTGTGTTATGGTTGTTAGGAAGGACGGGGAAACGAGTCAGGGAAGCTGATCTAGGCGGTGACCGTGGCCGAAGGTCCCAGCTACAGTAACCTAGAAATATTTTTCCGGATATTTTATCTCGATTTTTGTTACTGCAGTGGTCGTTGTACCAAAACCCGCCAAAAAAATCATGCAAAACTGTATAATGCAGATTTTTTTCTCTTGAATAGAGAGTAGAAATTACCACGGATCCCATCACTGCCAGTCACCATGAACGGCACGGTACCGCCGGTACCCCCAGAAATAGAAACCCGAATATATGCCAAATCTAAGCGAGTTGTTTTCCTAGCGAGACCCAGAAAACCACGTGGCGACGCACAGAAATTGAACATCTGTTGGCACGAATTCGCATGTTTTACCACCGAAACAAGAGAGGTGCGAAGTGCCTTCGATCTTGCAACTTATCGGAATTATGAGTACATAATTAGCGCGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGGAGAAGAAGAAGAAGAACT</pcr_primer_p1>
		<pcr_primer_p2>GTTTTGGTACAACGACCACT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>GATGGAGAAGAAGAAGAAGAACTTGAAATTCTGATAGGAGGGAGTCTTCTAAGGAGGCGGATATGAAGATAGTGTGATGTGTGTGTTATGGTTGTTAGGAAGGACGGGGAAACGAGTCAGGGAAGCTGATCTAGGCGGTGACCGTGGCCGAAGGTCCCAGCTACAGTAACCTAGAAATATTTTTCCGGATATTTTATCTCGATTTTTGTTACTGCAGTGGTCGTTGTACCAAAAC</canonical_amplicon>
		<polymorphic_amplicon>GATGGAGAAGAAGAAGAAGAACTTGAAATTCTGATAGGAGGGAGTCTTCTAAGRAGGCGGATATGAAGATAGTGTGATGTGTGTGTTATGGTTGTTAGGAAGGACGGGGAAACGAGTCAGGGAAGCTGATCTAGGCGGTGACCGTGGCCGAAGGTCCCAGCTACAGTAACCTAGAAATATTTTTCCGGATATTTTATCTCGATTTTTGTTACTGCAGTGGTCGTTGTACCAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29201</snp_id>
        <super_contig>c004400954.Contig1</super_contig>
        <contig_pos>5406</contig_pos>
        <strand>+</strand>
        <context>AAAAGTTTGC[C/T]TAAGAGACCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCGAAAAAAAAAGCGAAAAATCTAACGAAAAAATGTCAAAAGTTTGC</left_flank>
        <right_flank>TAAGAGACCGCCATAAAAATGAAACCTTTATAAATTGAGGGACATAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTAATTTTTGTAGAAAAAAAAAGACATTTTCACATATATTTAAGCAATTTTCTCCATAAATAACCTAGAAAATACAATGAAAACTGGCGAAAACAGAGAAATTTCAAATAAAACAGCAACATTTCAAAAACTACCGTACTCCTTAAAGGCGCATCCAACAATATTGTCTAACGGGTTTCACCACGAAAATCTTATTTTACAGTTTTTTTTACGAATTTTATAGTTTTTGATTACAATTGATCAGTTTTTAGGGTAAATAAAAATTTTTACAGGTATTTAAGTAATTTTCTCTAACAATGACTCAGAAAAATCAAGGAAAACTGTCGAAAATGGGCTTGGAGCGAAATATAATTTTCAAAAATTGCACCGTAATCTTTAAAGGTTCACAACAAAAAACTTGATTCGGTTTCGCAGCGAATCTAAATTTTTGTAATTTTTCACAAGAGTTTTCGAAAAAAAAAGCGAAAAATCTAACGAAAAAATGTCAAAAGTTTGCCTAAGAGACCGCCATAAAAATGAAACCTTTATAAATTGAGGGACATAAAATGAAAACCGGCGATAAAATAAGAGGCCCCGAATCATCATCAAATCATCAAAAACTCGTTTTGACAGATGCTCGTCGGCGCCGACTCCGAGTTCTTCCCTTCTCCCGTGTTACGGACCGGGGGAGCTCTTCCGATTGAAACATGTGCAGAAAGACAGAGAAGAAGACGACTAACAACAGATGTGTTGAGAAGCGGGGCAGCGTCAATATTGAAGGAATCGAAAAATATGAAAAAAAAGAAAAGAGAATGAAATTTAAAAAATCGACAAGATTTCATAGATTCCTTTGCTTCTTTTATGACAATTTTTGCTTTTGTACACCCCCGCTTTTGTATTTTTTTTCTGTAGAAAAATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCCGAAAGTGTTCTCAAAATATTTTCTGGGCGGTGAAAAAGAGCGCAAATCGAGAAAAAACG</canonical>
            <polymorphic>AAACTAATTTTTGTAGAAAAAAAAAGACATTTTCACATATATTTAAGCAATTTTCTCCATAAATAACCTAGAAAATACAATGAAAACTGGCGAAAACAGAGAAATTTCAAATAAAACAGCAACATTTCAAAAACTACCGTACTCCTTAAAGGCGCATCCAACAATATTGTCTAACGGGTTTCACCACGAAAATCTTATTTTACAGTTTTTTTTACGAATTTTATAGTTTTTGATTACAATTGATCAGTTTTTAGGGTAAATAAAAATTTTTACAGGTATTTAAGTAATTTTCTCTAACAATGACTCAGAAAAATCAAGGAAAACTGTCGAAAATGGGCTTGGAGCGAAATATAATTTTCAAAAATTGCACCGTAATCTTTAAAGGTTCACAACAAAAAACTTGATTCGGTTTCGCAGCGAATCTAAATTTTTGTAATTTTTCACAAGAGTTTTCGAAAAAAAAAGCGAAAAATCTAACGAAAAAATGTCAAAAGTTTGCYTAAGAGACCGCCATAAAAATGAAACCTTTATAAATTGAGGGACATAAAATGAAAACCGGCGATAAAATAAGAGGCCCCGAATCATCATCAAATCATCAAAAACTCGTTTTGACAGATGCTCGTCGGCGCCGACTCCGAGTTCTTCCCTTCTCCCGTGTTACGGACCGGGGGAGCTCTTCCGATTGAAACATGTGCAGAAAGACAGAGAAGAAGACGACTAACAACAGATGTGTTGAGAAGCGGGGCAGCGTCAATATTGAAGGAATCGAAAAATATGAAAAAAAAGAAAAGAGAATGAAATTTAAAAAATCGACAAGATTTCATAGATTCCTTTGCTTCTTTTATGACAATTTTTGCTTTTGTACACCCCCGCTTTTGTATTTTTTTTCTGTAGAAAAATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCCGAAAGTGTTCTCAAAATATTTTCTGGGCGGTGAAAAAGAGCGCAAATCGAGAAAAAACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 304 196</canonical_bands>
                <polymorphic_bands>696 304</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAATTGCACCGTAATCT</pcr_primer_p1>
		<pcr_primer_p2>AACGAGTTTTTGATGATTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATTGCACCGTAATCTTTAAAGGTTCACAACAAAAAACTTGATTCGGTTTCGCAGCGAATCTAAATTTTTGTAATTTTTCACAAGAGTTTTCGAAAAAAAAAGCGAAAAATCTAACGAAAAAATGTCAAAAGTTTGCCTAAGAGACCGCCATAAAAATGAAACCTTTATAAATTGAGGGACATAAAATGAAAACCGGCGATAAAATAAGAGGCCCCGAATCATCATCAAATCATCAAAAACTCGTT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAATTGCACCGTAATCTTTAAAGGTTCACAACAAAAAACTTGATTCGGTTTCGCAGCGAATCTAAATTTTTGTAATTTTTCACAAGAGTTTTCGAAAAAAAAAGCGAAAAATCTAACGAAAAAATGTCAAAAGTTTGCYTAAGAGACCGCCATAAAAATGAAACCTTTATAAATTGAGGGACATAAAATGAAAACCGGCGATAAAATAAGAGGCCCCGAATCATCATCAAATCATCAAAAACTCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29202</snp_id>
        <super_contig>c004400954.Contig1</super_contig>
        <contig_pos>5715</contig_pos>
        <strand>+</strand>
        <context>AATTYAAAAA[A/T]TCGACAAGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAGGAATCGAAAAATATGAAAAAAAAGAAAAGAGAATGAAATTTAAAAA</left_flank>
        <right_flank>TCGACAAGATTTCATAGATTCCTTTGCTTCTTTTATGACAATTTTTGCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATCAAGGAAAACTGTCGAAAATGGGCTTGGAGCGAAATATAATTTTCAAAAATTGCACCGTAATCTTTAAAGGTTCACAACAAAAAACTTGATTCGGTTTCGCAGCGAATCTAAATTTTTGTAATTTTTCACAAGAGTTTTCGAAAAAAAAAGCGAAAAATCTAACGAAAAAATGTCAAAAGTTTGCCTAAGAGACCGCCATAAAAATGAAACCTTTATAAATTGAGGGACATAAAATGAAAACCGGCGATAAAATAAGAGGCCCCGAATCATCATCAAATCATCAAAAACTCGTTTTGACAGATGCTCGTCGGCGCCGACTCCGAGTTCTTCCCTTCTCCCGTGTTACGGACCGGGGGAGCTCTTCCGATTGAAACATGTGCAGAAAGACAGAGAAGAAGACGACTAACAACAGATGTGTTGAGAAGCGGGGCAGCGTCAATATTGAAGGAATCGAAAAATATGAAAAAAAAGAAAAGAGAATGAAATTTAAAAAATCGACAAGATTTCATAGATTCCTTTGCTTCTTTTATGACAATTTTTGCTTTTGTACACCCCCGCTTTTGTATTTTTTTTCTGTAGAAAAATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCCGAAAGTGTTCTCAAAATATTTTCTGGGCGGTGAAAAAGAGCGCAAATCGAGAAAAAACGCTTGGCAGAAAAGAGCATATAAAAAAGAAGTATTTAATAGCTCTGCGTCCCATAAAAAGTCGTTATTCGTGCGAGATTAACTCGGAATTGGTTTCGATGGCAAAAAAAAAGGAAAGCAGGACTTTTTCATGAACACTAAAAGTGTATATTTTTCAGAATTTATGGTCATAAATGCGCTCGACAGCGAACGTACTGTAATACTACGGTAAATTAGCGTTGAGCTACGACGCGAAGGCTTCAAATTAAACGGCTATTCAGAGGTGCTTGAATTGGAAAAATAGCGGAAAAAGTACACAAAATGGGTTACTT</canonical>
            <polymorphic>AAAATCAAGGAAAACTGTCGAAAATGGGCTTGGAGCGAAATATAATTTTCAAAAATTGCACCGTAATCTTTAAAGGTTCACAACAAAAAACTTGATTCGGTTTCGCAGCGAATCTAAATTTTTGTAATTTTTCACAAGAGTTTTCGAAAAAAAAAGCGAAAAATCTAACGAAAAAATGTCAAAAGTTTGCCTAAGAGACCGCCATAAAAATGAAACCTTTATAAATTGAGGGACATAAAATGAAAACCGGCGATAAAATAAGAGGCCCCGAATCATCATCAAATCATCAAAAACTCGTTTTGACAGATGCTCGTCGGCGCCGACTCCGAGTTCTTCCCTTCTCCCGTGTTACGGACCGGGGGAGCTCTTCCGATTGAAACATGTGCAGAAAGACAGAGAAGAAGACGACTAACAACAGATGTGTTGAGAAGCGGGGCAGCGTCAATATTGAAGGAATCGAAAAATATGAAAAAAAAGAAAAGAGAATGAAATTTAAAAAWTCGACAAGATTTCATAGATTCCTTTGCTTCTTTTATGACAATTTTTGCTTTTGTACACCCCCGCTTTTGTATTTTTTTTCTGTAGAAAAATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCCGAAAGTGTTCTCAAAATATTTTCTGGGCGGTGAAAAAGAGCGCAAATCGAGAAAAAACGCTTGGCAGAAAAGAGCATATAAAAAAGAAGTATTTAATAGCTCTGCGTCCCATAAAAAGTCGTTATTCGTGCGAGATTAACTCGGAATTGGTTTCGATGGCAAAAAAAAAGGAAAGCAGGACTTTTTCATGAACACTAAAAGTGTATATTTTTCAGAATTTATGGTCATAAATGCGCTCGACAGCGAACGTACTGTAATACTACGGTAAATTAGCGTTGAGCTACGACGCGAAGGCTTCAAATTAAACGGCTATTCAGAGGTGCTTGAATTGGAAAAATAGCGGAAAAAGTACACAAAATGGGTTACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAGACAGAGAAGAAGACGAC</pcr_primer_p1>
		<pcr_primer_p2>GGGCTCTATTCAAAACAAACTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAAAGACAGAGAAGAAGACGACTAACAACAGATGTGTTGAGAAGCGGGGCAGCGTCAATATTGAAGGAATCGAAAAATATGAAAAAAAAGAAAAGAGAATGAAATTTAAAAAATCGACAAGATTTCATAGATTCCTTTGCTTCTTTTATGACAATTTTTGCTTTTGTACACCCCCGCTTTTGTATTTTTTTTCTGTAGAAAAATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCC</canonical_amplicon>
		<polymorphic_amplicon>AGAAAGACAGAGAAGAAGACGACTAACAACAGATGTGTTGAGAAGCGGGGCAGCGTCAATATTGAAGGAATCGAAAAATATGAAAAAAAAGAAAAGAGAATGAAATTTAAAAAWTCGACAAGATTTCATAGATTCCTTTGCTTCTTTTATGACAATTTTTGCTTTTGTACACCCCCGCTTTTGTATTTTTTTTCTGTAGAAAAATGGTAAAATTTGCATGAGAATAGTTTGTTTTGAATAGAGCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29203</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>6589</contig_pos>
        <strand>+</strand>
        <context>TCGTGTGTCT[C/T]GTGTGATCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTATCATCTATTTCCTTTTATATAACAATTTTCCACCCGTCGTGTGTCT</left_flank>
        <right_flank>GTGTGATCAATTCATTTTGTTCGAATGCGAGAACGCTTAACCTACTATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATATGCCTCCGGGGCTTTTATGTTACCGGGGCCCTTCAATTAGAGGGCGCCCTTTTGTTTTTCCAAGCCCTTCTCGGAGGAATCTAATTTTAGAGAGGCCTTCCATCAAAGGAGCCCTTCTAATACAGTTTAAATAAGGCATCGTGGTCCGTACTTGGTGCAATTTTTGGTTTCAGTTCAAATGTCTGCAGGTACAGGTTTATTGAATCGAAGCTCACCGGTTGGTGGTTTTGCATAGGGAATTCCTAGATAGCCATCGACAATTTTGGTGTCCTTCAATTTTAGTATTGGTTTTTTTGAATTCAAAAAGATAACATATGTATAACTCACATGCCTATAAATATTTCCTTGAATTGGTCCACATGAGGCGTGCAACTTCTCCGGATTTTCCTCTCTCTCTCCAGATGAGACAAGTGTCCTCCCATGATGTTTCTGTGAGAATTATCTTTTATCATCTATTTCCTTTTATATAACAATTTTCCACCCGTCGTGTGTCTTGTGTGATCAATTCATTTTGTTCGAATGCGAGAACGCTTAACCTACTATTTGACATCCTTTATCTCGCTTATGGAAAGAGATACCAAAAATCTGACAACTAAAAAAATGTAGATCATAATATGAAAAACATTTTATCAGTTAACAGATTTTCGATATCTGATATGGAACCGAGATAATTGAGCACAAAGCTCAAGTATGTGTGTTACAAAAAGAAATTTGTTAAAGAAAGACTAACATAGACTTATCTGCCACCTGACTGATTAATAAATACAAAAAATTAAAAGGCTTTACTAAATCAACAGTTTAAGCATGTCAAAAAATGGGGTCAAGAGCTTTGACAAATTGTAATTTATTTTTTAAAAAACCGATATCATCTCCCATAGACAACTTCTTCCAAATTCTTGTTATTATCTCGAATCATTTTAATGAACTCCCAGCGTCCCTTATGATATTCCTCTCTCATTTCGCCACGTGGATACGCGATACGGTAGTGGCGTTCC</canonical>
            <polymorphic>CCATATGCCTCCGGGGCTTTTATGTTACCGGGGCCCTTCAATTAGAGGGCGCCCTTTTGTTTTTCCAAGCCCTTCTCGGAGGAATCTAATTTTAGAGAGGCCTTCCATCAAAGGAGCCCTTCTAATACAGTTTAAATAAGGCATCGTGGTCCGTACTTGGTGCAATTTTTGGTTTCAGTTCAAATGTCTGCAGGTACAGGTTTATTGAATCGAAGCTCACCGGTTGGTGGTTTTGCATAGGGAATTCCTAGATAGCCATCGACAATTTTGGTGTCCTTCAATTTTAGTATTGGTTTTTTTGAATTCAAAAAGATAACATATGTATAACTCACATGCCTATAAATATTTCCTTGAATTGGTCCACATGAGGCGTGCAACTTCTCCGGATTTTCCTCTCTCTCTCCAGATGAGACAAGTGTCCTCCCATGATGTTTCTGTGAGAATTATCTTTTATCATCTATTTCCTTTTATATAACAATTTTCCACCCGTCGTGTGTCTYGTGTGATCAATTCATTTTGTTCGAATGCGAGAACGCTTAACCTACTATTTGACATCCTTTATCTCGCTTATGGAAAGAGATACCAAAAATCTGACAACTAAAAAAATGTAGATCATAATATGAAAAACATTTTATCAGTTAACAGATTTTCGATATCTGATATGGAACCGAGATAATTGAGCACAAAGCTCAAGTATGTGTGTTACAAAAAGAAATTTGTTAAAGAAAGACTAACATAGACTTATCTGCCACCTGACTGATTAATAAATACAAAAAATTAAAAGGCTTTACTAAATCAACAGTTTAAGCATGTCAAAAAATGGGGTCAAGAGCTTTGACAAATTGTAATTTATTTTTTAAAAAACCGATATCATCTCCCATAGACAACTTCTTCCAAATTCTTGTTATTATCTCGAATCATTTTAATGAACTCCCAGCGTCCCTTATGATATTCCTCTCTCATTTCGCCACGTGGATACGCGATACGGTAGTGGCGTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGTGAGAATTATCTTTTATCATCT</pcr_primer_p1>
		<pcr_primer_p2>GGTGGCAGATAAGTCTATGTTAG</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>TCTGTGAGAATTATCTTTTATCATCTATTTCCTTTTATATAACAATTTTCCACCCGTCGTGTGTCTTGTGTGATCAATTCATTTTGTTCGAATGCGAGAACGCTTAACCTACTATTTGACATCCTTTATCTCGCTTATGGAAAGAGATACCAAAAATCTGACAACTAAAAAAATGTAGATCATAATATGAAAAACATTTTATCAGTTAACAGATTTTCGATATCTGATATGGAACCGAGATAATTGAGCACAAAGCTCAAGTATGTGTGTTACAAAAAGAAATTTGTTAAAGAAAGACTAACATAGACTTATCTGCCACC</canonical_amplicon>
		<polymorphic_amplicon>TCTGTGAGAATTATCTTTTATCATCTATTTCCTTTTATATAACAATTTTCCACCCGTCGTGTGTCTYGTGTGATCAATTCATTTTGTTCGAATGCGAGAACGCTTAACCTACTATTTGACATCCTTTATCTCGCTTATGGAAAGAGATACCAAAAATCTGACAACTAAAAAAATGTAGATCATAATATGAAAAACATTTTATCAGTTAACAGATTTTCGATATCTGATATGGAACCGAGATAATTGAGCACAAAGCTCAAGTATGTGTGTTACAAAAAGAAATTTGTTAAAGAAAGACTAACATAGACTTATCTGCCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29204</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>12592</contig_pos>
        <strand>+</strand>
        <context>CCCTCAAATA[C/T]GAACAACTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCTCAGTAATACCTACAAAGCGGCACCAAGTTTCAAAAGCCCTCAAATA</left_flank>
        <right_flank>GAACAACTTTTCCTACTTTGCAACACCCGAATTCTTAACAATAACTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTCCGACAGCCTTGGTTCTGAGGTCACATCGCGCGAATTTTTCGAATTTACTATTAGTGCCGGTATAACTGATTGCAATGGGTTATACCGAAAATGGCACTAATATGTAGTAAACATGCAGTGGAGAAATGTGATGCCAATTTCAAATTATTTAAATAATGTACTCCCTGCACCTACCTCCGAGATGTACCTCAAGATCCCATGTACCCTAGGAACTCAATATACCCGGGCGGACTGAACTCTTACCTAGAGCTTTTTCAGATTCTGATTTCGAACTTCTGAATGTGCTACCCAATGTGAAGTATGCTAAACATCCATTGTAAGAGTGCAGCAGCTGAAACTATTTCTATTTTTCAAAACTTTAATGTCCGGAGTATGAATACCGGTCTCACTAAAATATCACAAGCACTGAACCAAAGAAAATGTTTTTTCCACATGACAAACAACCCCTCAGTAATACCTACAAAGCGGCACCAAGTTTCAAAAGCCCTCAAATACGAACAACTTTTCCTACTTTGCAACACCCGAATTCTTAACAATAACTTTTCACATCTTAACCATTATCGACATTCCCATTCACATGTTCGGCGCGTATCTTATTCAAAACTCTAAATTGTATGCGATCTGTGAAATGGAGCATGTTGAATTTACATTTTTGGAGTGTTCTTTTGGACTGGTTGGATGGTTTTCTATCCCGTCCTTTTATGCTCTATCCAGCTCTTGCTGGGTATACAGAGGGAGTTTTAGTGCGGCTTGGGATGTCTACAGCTGCGATGGCTTATCTATTTTTCACATTATTTTGTGGTAGGTGCAAAAAAGTCCGAAAAAATGCTCTGGCCTACCTTCTTTAAAACCATAAAGTATTGCAGCTGTTACAATATCCATATTTGGTATAATGGAAAATATATTCAACATTTTGTTTGCTGAAAACCATATCTGGAGGAAAATTCGATTTCCCTATTTTATGATCAATTGGATTTTTGTATTGACCCATTTTT</canonical>
            <polymorphic>GTTTCCGACAGCCTTGGTTCTGAGGTCACATCGCGCGAATTTTTCGAATTTACTATTAGTGCCGGTATAACTGATTGCAATGGGTTATACCGAAAATGGCACTAATATGTAGTAAACATGCAGTGGAGAAATGTGATGCCAATTTCAAATTATTTAAATAATGTACTCCCTGCACCTACCTCCGAGATGTACCTCAAGATCCCATGTACCCTAGGAACTCAATATACCCGGGCGGACTGAACTCTTACCTAGAGCTTTTTCAGATTCTGATTTCGAACTTCTGAATGTGCTACCCAATGTGAAGTATGCTAAACATCCATTGTAAGAGTGCAGCAGCTGAAACTATTTCTATTTTTCAAAACTTTAATGTCCGGAGTATGAATACCGGTCTCACTAAAATATCACAAGCACTGAACCAAAGAAAATGTTTTTTCCACATGACAAACAACCCCTCAGTAATACCTACAAAGCGGCACCAAGTTTCAAAAGCCCTCAAATAYGAACAACTTTTCCTACTTTGCAACACCCGAATTCTTAACAATAACTTTTCACATCTTAACCATTATCGACATTCCCATTCACATGTTCGGCGCGTATCTTATTCAAAACTCTAAATTGTATGCGATCTGTGAAATGGAGCATGTTGAATTTACATTTTTGGAGTGTTCTTTTGGACTGGTTGGATGGTTTTCTATCCCGTCCTTTTATGCTCTATCCAGCTCTTGCTGGGTATACAGAGGGAGTTTTAGTGCGGCTTGGGATGTCTACAGCTGCGATGGCTTATCTATTTTTCACATTATTTTGTGGTAGGTGCAAAAAAGTCCGAAAAAATGCTCTGGCCTACCTTCTTTAAAACCATAAAGTATTGCAGCTGTTACAATATCCATATTTGGTATAATGGAAAATATATTCAACATTTTGTTTGCTGAAAACCATATCTGGAGGAAAATTCGATTTCCCTATTTTATGATCAATTGGATTTTTGTATTGACCCATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGAATACCGGTCTCACTAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATCGCATACAATTTAGAGTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATGAATACCGGTCTCACTAAAATATCACAAGCACTGAACCAAAGAAAATGTTTTTTCCACATGACAAACAACCCCTCAGTAATACCTACAAAGCGGCACCAAGTTTCAAAAGCCCTCAAATACGAACAACTTTTCCTACTTTGCAACACCCGAATTCTTAACAATAACTTTTCACATCTTAACCATTATCGACATTCCCATTCACATGTTCGGCGCGTATCTTATTCAAAACTCTAAATTGTATGCGAT</canonical_amplicon>
		<polymorphic_amplicon>TATGAATACCGGTCTCACTAAAATATCACAAGCACTGAACCAAAGAAAATGTTTTTTCCACATGACAAACAACCCCTCAGTAATACCTACAAAGCGGCACCAAGTTTCAAAAGCCCTCAAATAYGAACAACTTTTCCTACTTTGCAACACCCGAATTCTTAACAATAACTTTTCACATCTTAACCATTATCGACATTCCCATTCACATGTTCGGCGCGTATCTTATTCAAAACTCTAAATTGTATGCGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29205</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>31794</contig_pos>
        <strand>+</strand>
        <context>acttttaaat[A/T]aaaaaaaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATGAAGTCATACCACCAAACAGTAACTAGAAATTTAATTACTTTTAAAT</left_flank>
        <right_flank>AAAAAAAAAATTAACTTACGATTTTGGGCGCTTGGCGTTTTCTGGAACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCGTTCTTTTTCACGGACATCTTCTTTGCTTCGCCTCTCTTTCTCTGAGTCTCCATCTTTCCTTATATCTTTTAGAGGACCCTGCTCGACGTCAGATGACCAGAGATTCTTTACGTCATCACTAAAGTACTCTAAAAATAGTTCGGAACCTTTGCACACATCATTCAGTTTTTATTCGAGAAAAAAAGCAAAGCGATTGCCACTACTAATGCCAATACAATATTATGCCAAACAACTAATCAGTTGACTGATTTGTGATATCTCTCACATAAAAAGGAATAGCTGAGCTTAAAATTGACGGTACAAATCATCAGTACACAAGCAGAAACATCAGCAATAAATATAATCAAATTATTGTCCAAGTGCAGTTGGCGGGTACTCGGTGACTATTTGGTTCCGGCAGAAAGCGTAATAAAGGATGTATCTGGATCCTGAGAACAGCACACTCATGAAGTCATACCACCAAACAGTAACTAGAAATTTAATTACTTTTAAATTAAAAAAAAAATTAACTTACGATTTTGGGCGCTTGGCGTTTTCTGGAACAAGTCAGAAGTTTGGTGATTGATGAAAATGTAATAGCACACTGTACGGATTATGAATGTGGCGTAGATAACGAGAATGCACATGATGCAGCGTTTGATGCGGTTCGTGTTTCTGGAACATTTTTTTCATGGAAGTGGAGTTGTCACTGTTTTCTTGAGATTCAAATTCTGTATCTTGTGTGCCACCTCCAATGTACAAGGGACCCTTTGCAACCTGGGGTGAACCCGACCCCCCCCCCACCTATATTAGGATCAAGGAACCTTGACTTACAATCCATTCGCACGGTTTGCTTCCCCCATTCTTAAAATTCACTTACTTCTGAACAACTAGCTCTTCTCCTTCTCCAACTTTTGATACACGAATGATCGTGAGAAGAGCGAAAATCAAAGTTGCAACACAGACAAACGCATCAATTCCAGGAACGACATACAATTGAATGATTTTCAAAGCTG</canonical>
            <polymorphic>CATCGTTCTTTTTCACGGACATCTTCTTTGCTTCGCCTCTCTTTCTCTGAGTCTCCATCTTTCCTTATATCTTTTAGAGGACCCTGCTCGACGTCAGATGACCAGAGATTCTTTACGTCATCACTAAAGTACTCTAAAAATAGTTCGGAACCTTTGCACACATCATTCAGTTTTTATTCGAGAAAAAAAGCAAAGCGATTGCCACTACTAATGCCAATACAATATTATGCCAAACAACTAATCAGTTGACTGATTTGTGATATCTCTCACATAAAAAGGAATAGCTGAGCTTAAAATTGACGGTACAAATCATCAGTACACAAGCAGAAACATCAGCAATAAATATAATCAAATTATTGTCCAAGTGCAGTTGGCGGGTACTCGGTGACTATTTGGTTCCGGCAGAAAGCGTAATAAAGGATGTATCTGGATCCTGAGAACAGCACACTCATGAAGTCATACCACCAAACAGTAACTAGAAATTTAATTACTTTTAAATWAAAAAAAAAATTAACTTACGATTTTGGGCGCTTGGCGTTTTCTGGAACAAGTCAGAAGTTTGGTGATTGATGAAAATGTAATAGCACACTGTACGGATTATGAATGTGGCGTAGATAACGAGAATGCACATGATGCAGCGTTTGATGCGGTTCGTGTTTCTGGAACATTTTTTTCATGGAAGTGGAGTTGTCACTGTTTTCTTGAGATTCAAATTCTGTATCTTGTGTGCCACCTCCAATGTACAAGGGACCCTTTGCAACCTGGGGTGAACCCGACCCCCCCCCCACCTATATTAGGATCAAGGAACCTTGACTTACAATCCATTCGCACGGTTTGCTTCCCCCATTCTTAAAATTCACTTACTTCTGAACAACTAGCTCTTCTCCTTCTCCAACTTTTGATACACGAATGATCGTGAGAAGAGCGAAAATCAAAGTTGCAACACAGACAAACGCATCAATTCCAGGAACGACATACAATTGAATGATTTTCAAAGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>339 291 193 150 12 10 5</canonical_bands>
                <polymorphic_bands>339 291 193 150 17 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>294 203 142 129 106 57 22 19 12 11 5</canonical_bands>
                <polymorphic_bands>294 203 142 129 106 57 23 22 19 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCAGAAACATCAGCAATAAATA</pcr_primer_p1>
		<pcr_primer_p2>ATCAATCACCAAACTTCTGACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGCAGAAACATCAGCAATAAATATAATCAAATTATTGTCCAAGTGCAGTTGGCGGGTACTCGGTGACTATTTGGTTCCGGCAGAAAGCGTAATAAAGGATGTATCTGGATCCTGAGAACAGCACACTCATGAAGTCATACCACCAAACAGTAACTAGAAATTTAATTACTTTTAAATTAAAAAAAAAATTAACTTACGATTTTGGGCGCTTGGCGTTTTCTGGAACAAGTCAGAAGTTTGGTGATTGAT</canonical_amplicon>
		<polymorphic_amplicon>AGCAGAAACATCAGCAATAAATATAATCAAATTATTGTCCAAGTGCAGTTGGCGGGTACTCGGTGACTATTTGGTTCCGGCAGAAAGCGTAATAAAGGATGTATCTGGATCCTGAGAACAGCACACTCATGAAGTCATACCACCAAACAGTAACTAGAAATTTAATTACTTTTAAATWAAAAAAAAAATTAACTTACGATTTTGGGCGCTTGGCGTTTTCTGGAACAAGTCAGAAGTTTGGTGATTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29206</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>31908</contig_pos>
        <strand>+</strand>
        <context>ATGTGGCGTA[A/G]ATMACGAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATTGATGAAAATGTAATAGCACACTGTACGGATTATGAATGTGGCGTA</left_flank>
        <right_flank>ATAACGAGAATGCACATGATGCAGCGTTTGATGCGGTTCGTGTTTCTGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGTCATCACTAAAGTACTCTAAAAATAGTTCGGAACCTTTGCACACATCATTCAGTTTTTATTCGAGAAAAAAAGCAAAGCGATTGCCACTACTAATGCCAATACAATATTATGCCAAACAACTAATCAGTTGACTGATTTGTGATATCTCTCACATAAAAAGGAATAGCTGAGCTTAAAATTGACGGTACAAATCATCAGTACACAAGCAGAAACATCAGCAATAAATATAATCAAATTATTGTCCAAGTGCAGTTGGCGGGTACTCGGTGACTATTTGGTTCCGGCAGAAAGCGTAATAAAGGATGTATCTGGATCCTGAGAACAGCACACTCATGAAGTCATACCACCAAACAGTAACTAGAAATTTAATTACTTTTAAATTAAAAAAAAAATTAACTTACGATTTTGGGCGCTTGGCGTTTTCTGGAACAAGTCAGAAGTTTGGTGATTGATGAAAATGTAATAGCACACTGTACGGATTATGAATGTGGCGTAGATAACGAGAATGCACATGATGCAGCGTTTGATGCGGTTCGTGTTTCTGGAACATTTTTTTCATGGAAGTGGAGTTGTCACTGTTTTCTTGAGATTCAAATTCTGTATCTTGTGTGCCACCTCCAATGTACAAGGGACCCTTTGCAACCTGGGGTGAACCCGACCCCCCCCCCACCTATATTAGGATCAAGGAACCTTGACTTACAATCCATTCGCACGGTTTGCTTCCCCCATTCTTAAAATTCACTTACTTCTGAACAACTAGCTCTTCTCCTTCTCCAACTTTTGATACACGAATGATCGTGAGAAGAGCGAAAATCAAAGTTGCAACACAGACAAACGCATCAATTCCAGGAACGACATACAATTGAATGATTTTCAAAGCTGTAATCAAGAAACGTGACGTTTTATTAAACTATTCAATTAACCTTCAATCTCAAACAAGAATGGGCAAGGAGCAATATCACAAAATGGGACATCGGATAGTACCTGATAAACTAA</canonical>
            <polymorphic>ACGTCATCACTAAAGTACTCTAAAAATAGTTCGGAACCTTTGCACACATCATTCAGTTTTTATTCGAGAAAAAAAGCAAAGCGATTGCCACTACTAATGCCAATACAATATTATGCCAAACAACTAATCAGTTGACTGATTTGTGATATCTCTCACATAAAAAGGAATAGCTGAGCTTAAAATTGACGGTACAAATCATCAGTACACAAGCAGAAACATCAGCAATAAATATAATCAAATTATTGTCCAAGTGCAGTTGGCGGGTACTCGGTGACTATTTGGTTCCGGCAGAAAGCGTAATAAAGGATGTATCTGGATCCTGAGAACAGCACACTCATGAAGTCATACCACCAAACAGTAACTAGAAATTTAATTACTTTTAAATTAAAAAAAAAATTAACTTACGATTTTGGGCGCTTGGCGTTTTCTGGAACAAGTCAGAAGTTTGGTGATTGATGAAAATGTAATAGCACACTGTACGGATTATGAATGTGGCGTARATAACGAGAATGCACATGATGCAGCGTTTGATGCGGTTCGTGTTTCTGGAACATTTTTTTCATGGAAGTGGAGTTGTCACTGTTTTCTTGAGATTCAAATTCTGTATCTTGTGTGCCACCTCCAATGTACAAGGGACCCTTTGCAACCTGGGGTGAACCCGACCCCCCCCCCACCTATATTAGGATCAAGGAACCTTGACTTACAATCCATTCGCACGGTTTGCTTCCCCCATTCTTAAAATTCACTTACTTCTGAACAACTAGCTCTTCTCCTTCTCCAACTTTTGATACACGAATGATCGTGAGAAGAGCGAAAATCAAAGTTGCAACACAGACAAACGCATCAATTCCAGGAACGACATACAATTGAATGATTTTCAAAGCTGTAATCAAGAAACGTGACGTTTTATTAAACTATTCAATTAACCTTCAATCTCAAACAAGAATGGGCAAGGAGCAATATCACAAAATGGGACATCGGATAGTACCTGATAAACTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCATACCACCAAACAGTAAC</pcr_primer_p1>
		<pcr_primer_p2>AGAAAACAGTGACAACTCCACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGTCATACCACCAAACAGTAACTAGAAATTTAATTACTTTTAAATTAAAAAAAAAATTAACTTACGATTTTGGGCGCTTGGCGTTTTCTGGAACAAGTCAGAAGTTTGGTGATTGATGAAAATGTAATAGCACACTGTACGGATTATGAATGTGGCGTAGATAACGAGAATGCACATGATGCAGCGTTTGATGCGGTTCGTGTTTCTGGAACATTTTTTTCATGGAAGTGGAGTTGTCACTGTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>AAGTCATACCACCAAACAGTAACTAGAAATTTAATTACTTTTAAATTAAAAAAAAAATTAACTTACGATTTTGGGCGCTTGGCGTTTTCTGGAACAAGTCAGAAGTTTGGTGATTGATGAAAATGTAATAGCACACTGTACGGATTATGAATGTGGCGTARATAACGAGAATGCACATGATGCAGCGTTTGATGCGGTTCGTGTTTCTGGAACATTTTTTTCATGGAAGTGGAGTTGTCACTGTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29207</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>31911</contig_pos>
        <strand>+</strand>
        <context>TGGCGTARAT[A/C]ACGAGAATGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGATGAAAATGTAATAGCACACTGTACGGATTATGAATGTGGCGTAGAT</left_flank>
        <right_flank>ACGAGAATGCACATGATGCAGCGTTTGATGCGGTTCGTGTTTCTGGAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATCACTAAAGTACTCTAAAAATAGTTCGGAACCTTTGCACACATCATTCAGTTTTTATTCGAGAAAAAAAGCAAAGCGATTGCCACTACTAATGCCAATACAATATTATGCCAAACAACTAATCAGTTGACTGATTTGTGATATCTCTCACATAAAAAGGAATAGCTGAGCTTAAAATTGACGGTACAAATCATCAGTACACAAGCAGAAACATCAGCAATAAATATAATCAAATTATTGTCCAAGTGCAGTTGGCGGGTACTCGGTGACTATTTGGTTCCGGCAGAAAGCGTAATAAAGGATGTATCTGGATCCTGAGAACAGCACACTCATGAAGTCATACCACCAAACAGTAACTAGAAATTTAATTACTTTTAAATTAAAAAAAAAATTAACTTACGATTTTGGGCGCTTGGCGTTTTCTGGAACAAGTCAGAAGTTTGGTGATTGATGAAAATGTAATAGCACACTGTACGGATTATGAATGTGGCGTAGATAACGAGAATGCACATGATGCAGCGTTTGATGCGGTTCGTGTTTCTGGAACATTTTTTTCATGGAAGTGGAGTTGTCACTGTTTTCTTGAGATTCAAATTCTGTATCTTGTGTGCCACCTCCAATGTACAAGGGACCCTTTGCAACCTGGGGTGAACCCGACCCCCCCCCCACCTATATTAGGATCAAGGAACCTTGACTTACAATCCATTCGCACGGTTTGCTTCCCCCATTCTTAAAATTCACTTACTTCTGAACAACTAGCTCTTCTCCTTCTCCAACTTTTGATACACGAATGATCGTGAGAAGAGCGAAAATCAAAGTTGCAACACAGACAAACGCATCAATTCCAGGAACGACATACAATTGAATGATTTTCAAAGCTGTAATCAAGAAACGTGACGTTTTATTAAACTATTCAATTAACCTTCAATCTCAAACAAGAATGGGCAAGGAGCAATATCACAAAATGGGACATCGGATAGTACCTGATAAACTAATTT</canonical>
            <polymorphic>TCATCACTAAAGTACTCTAAAAATAGTTCGGAACCTTTGCACACATCATTCAGTTTTTATTCGAGAAAAAAAGCAAAGCGATTGCCACTACTAATGCCAATACAATATTATGCCAAACAACTAATCAGTTGACTGATTTGTGATATCTCTCACATAAAAAGGAATAGCTGAGCTTAAAATTGACGGTACAAATCATCAGTACACAAGCAGAAACATCAGCAATAAATATAATCAAATTATTGTCCAAGTGCAGTTGGCGGGTACTCGGTGACTATTTGGTTCCGGCAGAAAGCGTAATAAAGGATGTATCTGGATCCTGAGAACAGCACACTCATGAAGTCATACCACCAAACAGTAACTAGAAATTTAATTACTTTTAAATTAAAAAAAAAATTAACTTACGATTTTGGGCGCTTGGCGTTTTCTGGAACAAGTCAGAAGTTTGGTGATTGATGAAAATGTAATAGCACACTGTACGGATTATGAATGTGGCGTAGATMACGAGAATGCACATGATGCAGCGTTTGATGCGGTTCGTGTTTCTGGAACATTTTTTTCATGGAAGTGGAGTTGTCACTGTTTTCTTGAGATTCAAATTCTGTATCTTGTGTGCCACCTCCAATGTACAAGGGACCCTTTGCAACCTGGGGTGAACCCGACCCCCCCCCCACCTATATTAGGATCAAGGAACCTTGACTTACAATCCATTCGCACGGTTTGCTTCCCCCATTCTTAAAATTCACTTACTTCTGAACAACTAGCTCTTCTCCTTCTCCAACTTTTGATACACGAATGATCGTGAGAAGAGCGAAAATCAAAGTTGCAACACAGACAAACGCATCAATTCCAGGAACGACATACAATTGAATGATTTTCAAAGCTGTAATCAAGAAACGTGACGTTTTATTAAACTATTCAATTAACCTTCAATCTCAAACAAGAATGGGCAAGGAGCAATATCACAAAATGGGACATCGGATAGTACCTGATAAACTAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCATACCACCAAACAGTAAC</pcr_primer_p1>
		<pcr_primer_p2>AGAAAACAGTGACAACTCCACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGTCATACCACCAAACAGTAACTAGAAATTTAATTACTTTTAAATTAAAAAAAAAATTAACTTACGATTTTGGGCGCTTGGCGTTTTCTGGAACAAGTCAGAAGTTTGGTGATTGATGAAAATGTAATAGCACACTGTACGGATTATGAATGTGGCGTAGATAACGAGAATGCACATGATGCAGCGTTTGATGCGGTTCGTGTTTCTGGAACATTTTTTTCATGGAAGTGGAGTTGTCACTGTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>AAGTCATACCACCAAACAGTAACTAGAAATTTAATTACTTTTAAATTAAAAAAAAAATTAACTTACGATTTTGGGCGCTTGGCGTTTTCTGGAACAAGTCAGAAGTTTGGTGATTGATGAAAATGTAATAGCACACTGTACGGATTATGAATGTGGCGTAGATMACGAGAATGCACATGATGCAGCGTTTGATGCGGTTCGTGTTTCTGGAACATTTTTTTCATGGAAGTGGAGTTGTCACTGTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29208</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>31998</contig_pos>
        <strand>+</strand>
        <context>CTGTTTTCTT[C/G]AGATTCAART</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTGTTTCTGGAACATTTTTTTCATGGAAGTGGAGTTGTCACTGTTTTCTT</left_flank>
        <right_flank>AGATTCAAATTCTGTATCTTGTGTGCCACCTCCAATGTACAAGGGACCCT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTACTAATGCCAATACAATATTATGCCAAACAACTAATCAGTTGACTGATTTGTGATATCTCTCACATAAAAAGGAATAGCTGAGCTTAAAATTGACGGTACAAATCATCAGTACACAAGCAGAAACATCAGCAATAAATATAATCAAATTATTGTCCAAGTGCAGTTGGCGGGTACTCGGTGACTATTTGGTTCCGGCAGAAAGCGTAATAAAGGATGTATCTGGATCCTGAGAACAGCACACTCATGAAGTCATACCACCAAACAGTAACTAGAAATTTAATTACTTTTAAATTAAAAAAAAAATTAACTTACGATTTTGGGCGCTTGGCGTTTTCTGGAACAAGTCAGAAGTTTGGTGATTGATGAAAATGTAATAGCACACTGTACGGATTATGAATGTGGCGTAGATAACGAGAATGCACATGATGCAGCGTTTGATGCGGTTCGTGTTTCTGGAACATTTTTTTCATGGAAGTGGAGTTGTCACTGTTTTCTTGAGATTCAAATTCTGTATCTTGTGTGCCACCTCCAATGTACAAGGGACCCTTTGCAACCTGGGGTGAACCCGACCCCCCCCCCACCTATATTAGGATCAAGGAACCTTGACTTACAATCCATTCGCACGGTTTGCTTCCCCCATTCTTAAAATTCACTTACTTCTGAACAACTAGCTCTTCTCCTTCTCCAACTTTTGATACACGAATGATCGTGAGAAGAGCGAAAATCAAAGTTGCAACACAGACAAACGCATCAATTCCAGGAACGACATACAATTGAATGATTTTCAAAGCTGTAATCAAGAAACGTGACGTTTTATTAAACTATTCAATTAACCTTCAATCTCAAACAAGAATGGGCAAGGAGCAATATCACAAAATGGGACATCGGATAGTACCTGATAAACTAATTTTATCAAGTTTTGAAATCCCAAAAACTCACAAATATCCTTGTGAAAAATGACAAAAACGCGTACACTATTGTTACAAGCATCACTCTT</canonical>
            <polymorphic>CTACTAATGCCAATACAATATTATGCCAAACAACTAATCAGTTGACTGATTTGTGATATCTCTCACATAAAAAGGAATAGCTGAGCTTAAAATTGACGGTACAAATCATCAGTACACAAGCAGAAACATCAGCAATAAATATAATCAAATTATTGTCCAAGTGCAGTTGGCGGGTACTCGGTGACTATTTGGTTCCGGCAGAAAGCGTAATAAAGGATGTATCTGGATCCTGAGAACAGCACACTCATGAAGTCATACCACCAAACAGTAACTAGAAATTTAATTACTTTTAAATTAAAAAAAAAATTAACTTACGATTTTGGGCGCTTGGCGTTTTCTGGAACAAGTCAGAAGTTTGGTGATTGATGAAAATGTAATAGCACACTGTACGGATTATGAATGTGGCGTAGATAACGAGAATGCACATGATGCAGCGTTTGATGCGGTTCGTGTTTCTGGAACATTTTTTTCATGGAAGTGGAGTTGTCACTGTTTTCTTSAGATTCAAATTCTGTATCTTGTGTGCCACCTCCAATGTACAAGGGACCCTTTGCAACCTGGGGTGAACCCGACCCCCCCCCCACCTATATTAGGATCAAGGAACCTTGACTTACAATCCATTCGCACGGTTTGCTTCCCCCATTCTTAAAATTCACTTACTTCTGAACAACTAGCTCTTCTCCTTCTCCAACTTTTGATACACGAATGATCGTGAGAAGAGCGAAAATCAAAGTTGCAACACAGACAAACGCATCAATTCCAGGAACGACATACAATTGAATGATTTTCAAAGCTGTAATCAAGAAACGTGACGTTTTATTAAACTATTCAATTAACCTTCAATCTCAAACAAGAATGGGCAAGGAGCAATATCACAAAATGGGACATCGGATAGTACCTGATAAACTAATTTTATCAAGTTTTGAAATCCCAAAAACTCACAAATATCCTTGTGAAAAATGACAAAAACGCGTACACTATTGTTACAAGCATCACTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>223 214 199 118 92 90 41 17 6</canonical_bands>
                <polymorphic_bands>255 223 199 118 92 90 17 6</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAGCACACTGTACGGATTATG</pcr_primer_p1>
		<pcr_primer_p2>GAATGGATTGTAAGTCAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATAGCACACTGTACGGATTATGAATGTGGCGTAGATAACGAGAATGCACATGATGCAGCGTTTGATGCGGTTCGTGTTTCTGGAACATTTTTTTCATGGAAGTGGAGTTGTCACTGTTTTCTTGAGATTCAAATTCTGTATCTTGTGTGCCACCTCCAATGTACAAGGGACCCTTTGCAACCTGGGGTGAACCCGACCCCCCCCCCACCTATATTAGGATCAAGGAACCTTGACTTACAATCCATTC</canonical_amplicon>
		<polymorphic_amplicon>AATAGCACACTGTACGGATTATGAATGTGGCGTAGATAACGAGAATGCACATGATGCAGCGTTTGATGCGGTTCGTGTTTCTGGAACATTTTTTTCATGGAAGTGGAGTTGTCACTGTTTTCTTSAGATTCAAATTCTGTATCTTGTGTGCCACCTCCAATGTACAAGGGACCCTTTGCAACCTGGGGTGAACCCGACCCCCCCCCCACCTATATTAGGATCAAGGAACCTTGACTTACAATCCATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29209</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>32007</contig_pos>
        <strand>+</strand>
        <context>TSAGATTCAA[A/G]TTCTGTATCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAACATTTTTTTCATGGAAGTGGAGTTGTCACTGTTTTCTTGAGATTCAA</left_flank>
        <right_flank>TTCTGTATCTTGTGTGCCACCTCCAATGTACAAGGGACCCTTTGCAACCT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAATACAATATTATGCCAAACAACTAATCAGTTGACTGATTTGTGATATCTCTCACATAAAAAGGAATAGCTGAGCTTAAAATTGACGGTACAAATCATCAGTACACAAGCAGAAACATCAGCAATAAATATAATCAAATTATTGTCCAAGTGCAGTTGGCGGGTACTCGGTGACTATTTGGTTCCGGCAGAAAGCGTAATAAAGGATGTATCTGGATCCTGAGAACAGCACACTCATGAAGTCATACCACCAAACAGTAACTAGAAATTTAATTACTTTTAAATTAAAAAAAAAATTAACTTACGATTTTGGGCGCTTGGCGTTTTCTGGAACAAGTCAGAAGTTTGGTGATTGATGAAAATGTAATAGCACACTGTACGGATTATGAATGTGGCGTAGATAACGAGAATGCACATGATGCAGCGTTTGATGCGGTTCGTGTTTCTGGAACATTTTTTTCATGGAAGTGGAGTTGTCACTGTTTTCTTGAGATTCAAATTCTGTATCTTGTGTGCCACCTCCAATGTACAAGGGACCCTTTGCAACCTGGGGTGAACCCGACCCCCCCCCCACCTATATTAGGATCAAGGAACCTTGACTTACAATCCATTCGCACGGTTTGCTTCCCCCATTCTTAAAATTCACTTACTTCTGAACAACTAGCTCTTCTCCTTCTCCAACTTTTGATACACGAATGATCGTGAGAAGAGCGAAAATCAAAGTTGCAACACAGACAAACGCATCAATTCCAGGAACGACATACAATTGAATGATTTTCAAAGCTGTAATCAAGAAACGTGACGTTTTATTAAACTATTCAATTAACCTTCAATCTCAAACAAGAATGGGCAAGGAGCAATATCACAAAATGGGACATCGGATAGTACCTGATAAACTAATTTTATCAAGTTTTGAAATCCCAAAAACTCACAAATATCCTTGTGAAAAATGACAAAAACGCGTACACTATTGTTACAAGCATCACTCTTTTCTTCGAT</canonical>
            <polymorphic>CCAATACAATATTATGCCAAACAACTAATCAGTTGACTGATTTGTGATATCTCTCACATAAAAAGGAATAGCTGAGCTTAAAATTGACGGTACAAATCATCAGTACACAAGCAGAAACATCAGCAATAAATATAATCAAATTATTGTCCAAGTGCAGTTGGCGGGTACTCGGTGACTATTTGGTTCCGGCAGAAAGCGTAATAAAGGATGTATCTGGATCCTGAGAACAGCACACTCATGAAGTCATACCACCAAACAGTAACTAGAAATTTAATTACTTTTAAATTAAAAAAAAAATTAACTTACGATTTTGGGCGCTTGGCGTTTTCTGGAACAAGTCAGAAGTTTGGTGATTGATGAAAATGTAATAGCACACTGTACGGATTATGAATGTGGCGTAGATAACGAGAATGCACATGATGCAGCGTTTGATGCGGTTCGTGTTTCTGGAACATTTTTTTCATGGAAGTGGAGTTGTCACTGTTTTCTTGAGATTCAARTTCTGTATCTTGTGTGCCACCTCCAATGTACAAGGGACCCTTTGCAACCTGGGGTGAACCCGACCCCCCCCCCACCTATATTAGGATCAAGGAACCTTGACTTACAATCCATTCGCACGGTTTGCTTCCCCCATTCTTAAAATTCACTTACTTCTGAACAACTAGCTCTTCTCCTTCTCCAACTTTTGATACACGAATGATCGTGAGAAGAGCGAAAATCAAAGTTGCAACACAGACAAACGCATCAATTCCAGGAACGACATACAATTGAATGATTTTCAAAGCTGTAATCAAGAAACGTGACGTTTTATTAAACTATTCAATTAACCTTCAATCTCAAACAAGAATGGGCAAGGAGCAATATCACAAAATGGGACATCGGATAGTACCTGATAAACTAATTTTATCAAGTTTTGAAATCCCAAAAACTCACAAATATCCTTGTGAAAAATGACAAAAACGCGTACACTATTGTTACAAGCATCACTCTTTTCTTCGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>360 267 231 142</canonical_bands>
                <polymorphic_bands>373 360 267</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>203 142 129 106 101 81 78 57 56 19 12 11 5</canonical_bands>
                <polymorphic_bands>345 129 106 101 81 78 57 56 19 12 11 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAGCACACTGTACGGATTATG</pcr_primer_p1>
		<pcr_primer_p2>GAATGGATTGTAAGTCAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATAGCACACTGTACGGATTATGAATGTGGCGTAGATAACGAGAATGCACATGATGCAGCGTTTGATGCGGTTCGTGTTTCTGGAACATTTTTTTCATGGAAGTGGAGTTGTCACTGTTTTCTTGAGATTCAAATTCTGTATCTTGTGTGCCACCTCCAATGTACAAGGGACCCTTTGCAACCTGGGGTGAACCCGACCCCCCCCCCACCTATATTAGGATCAAGGAACCTTGACTTACAATCCATTC</canonical_amplicon>
		<polymorphic_amplicon>AATAGCACACTGTACGGATTATGAATGTGGCGTAGATAACGAGAATGCACATGATGCAGCGTTTGATGCGGTTCGTGTTTCTGGAACATTTTTTTCATGGAAGTGGAGTTGTCACTGTTTTCTTGAGATTCAARTTCTGTATCTTGTGTGCCACCTCCAATGTACAAGGGACCCTTTGCAACCTGGGGTGAACCCGACCCCCCCCCCACCTATATTAGGATCAAGGAACCTTGACTTACAATCCATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29210</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>52871</contig_pos>
        <strand></strand>
        <context>ATGCCACCAC[T/C]GATTTTTGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAGGAATTCATATACTATCTTCTTTATATACAACTAACGAATGCCACCAC</left_flank>
        <right_flank>GATTTTTGGTTGGCATTTCTGGCTAAACCTGTTCAAATTTATCCAGTTAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCAAAACCCGGCAAACCCGGAAAAGGGCCCTCCGAGAGGTTCTTCAAAAATAGGGTCCCTCTAATTGTAGAAGGTTTCACGGTGTTCGCTGCATGACTAATACATTTTTAGAACTAACAACATCCTTTCTTTTATGATGTTCGGTTTTTTCTAGTTAATTTTATCAGCTGCCAATGGGCTGCAGAGAGAAAAACAATCAGGAACAAATCATGTTCGTTAACTAATCAAAATTCATCATTAAAGAAAACAATTTTCTAAAAAGCAACAGGTGTAAATACGATATTAAGTAAAAATTGATTCCATTTTCCAAAAAACTGCCATTCCAAATGATCCAAATAGAACTGAACCCCTATCTTCCGGTTATTGCAAACACCCTTTGCCGGTTGCTTAGATTTAGTCACAAATTGTCCTGTGGTTTATCTGATCCTGTTTAAAAGTTCCGTTAAGGAGGAATTCATATACTATCTTCTTTATATACAACTAACGAATGCCACCACTGATTTTTGGTTGGCATTTCTGGCTAAACCTGTTCAAATTTATCCAGTTATTGGAGGACATTCTCTTGGTATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATC</canonical>
            <polymorphic>TCTCAAAACCCGGCAAACCCGGAAAAGGGCCCTCCGAGAGGTTCTTCAAAAATAGGGTCCCTCTAATTGTAGAAGGTTTCACGGTGTTCGCTGCATGACTAATACATTTTTAGAACTAACAACATCCTTTCTTTTATGATGTTCGGTTTTTTCTAGTTAATTTTATCAGCTGCCAATGGGCTGCAGAGAGAAAAACAATCAGGAACAAATCATGTTCGTTAACTAATCAAAATTCATCATTAAAGAAAACAATTTTCTAAAAAGCAACAGGTGTAAATACGATATTAAGTAAAAATTGATTCCATTTTCCAAAAAACTGCCATTCCAAATGATCCAAATAGAACTGAACCCCTATCTTCCGGTTATTGCAAACACCCTTTGCCGGTTGCTTAGATTTAGTCACAAATTGTCCTGTGGTTTATCTGATCCTGTTTAAAAGTTCCGTTAAGGAGGAATTCATATACTATCTTCTTTATATACAACTAACGAATGCCACCACYGATTTTTGGTTGGCATTTCTGGCTAAACCTGTTCAAATTTATCCAGTTATTGGAGGACATTCTCTTGGTATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTAGTCACAAATTGTCCTGT</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGAAACATGAAAAATACTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATTTAGTCACAAATTGTCCTGTGGTTTATCTGATCCTGTTTAAAAGTTCCGTTAAGGAGGAATTCATATACTATCTTCTTTATATACAACTAACGAATGCCACCACTGATTTTTGGTTGGCATTTCTGGCTAAACCTGTTCAAATTTATCCAGTTATTGGAGGACATTCTCTTGGTATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTAGTCACAAATTGTCCTGTGGTTTATCTGATCCTGTTTAAAAGTTCCGTTAAGGAGGAATTCATATACTATCTTCTTTATATACAACTAACGAATGCCACCACYGATTTTTGGTTGGCATTTCTGGCTAAACCTGTTCAAATTTATCCAGTTATTGGAGGACATTCTCTTGGTATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29211</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>52940</contig_pos>
        <strand></strand>
        <context>ATTCTCTTGG[T/C]ATATTGTATA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTGGCTAAACCTGTTCAAATTTATCCAGTTATTGGAGGACATTCTCTTGG</left_flank>
        <right_flank>ATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAAGGTTTCACGGTGTTCGCTGCATGACTAATACATTTTTAGAACTAACAACATCCTTTCTTTTATGATGTTCGGTTTTTTCTAGTTAATTTTATCAGCTGCCAATGGGCTGCAGAGAGAAAAACAATCAGGAACAAATCATGTTCGTTAACTAATCAAAATTCATCATTAAAGAAAACAATTTTCTAAAAAGCAACAGGTGTAAATACGATATTAAGTAAAAATTGATTCCATTTTCCAAAAAACTGCCATTCCAAATGATCCAAATAGAACTGAACCCCTATCTTCCGGTTATTGCAAACACCCTTTGCCGGTTGCTTAGATTTAGTCACAAATTGTCCTGTGGTTTATCTGATCCTGTTTAAAAGTTCCGTTAAGGAGGAATTCATATACTATCTTCTTTATATACAACTAACGAATGCCACCACTGATTTTTGGTTGGCATTTCTGGCTAAACCTGTTCAAATTTATCCAGTTATTGGAGGACATTCTCTTGGTATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATCTGGAAGACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTTTGCCTTGAATGTA</canonical>
            <polymorphic>TAGAAGGTTTCACGGTGTTCGCTGCATGACTAATACATTTTTAGAACTAACAACATCCTTTCTTTTATGATGTTCGGTTTTTTCTAGTTAATTTTATCAGCTGCCAATGGGCTGCAGAGAGAAAAACAATCAGGAACAAATCATGTTCGTTAACTAATCAAAATTCATCATTAAAGAAAACAATTTTCTAAAAAGCAACAGGTGTAAATACGATATTAAGTAAAAATTGATTCCATTTTCCAAAAAACTGCCATTCCAAATGATCCAAATAGAACTGAACCCCTATCTTCCGGTTATTGCAAACACCCTTTGCCGGTTGCTTAGATTTAGTCACAAATTGTCCTGTGGTTTATCTGATCCTGTTTAAAAGTTCCGTTAAGGAGGAATTCATATACTATCTTCTTTATATACAACTAACGAATGCCACCACTGATTTTTGGTTGGCATTTCTGGCTAAACCTGTTCAAATTTATCCAGTTATTGGAGGACATTCTCTTGGYATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATCTGGAAGACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTTTGCCTTGAATGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTAGTCACAAATTGTCCTGT</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGAAACATGAAAAATACTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATTTAGTCACAAATTGTCCTGTGGTTTATCTGATCCTGTTTAAAAGTTCCGTTAAGGAGGAATTCATATACTATCTTCTTTATATACAACTAACGAATGCCACCACTGATTTTTGGTTGGCATTTCTGGCTAAACCTGTTCAAATTTATCCAGTTATTGGAGGACATTCTCTTGGTATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTAGTCACAAATTGTCCTGTGGTTTATCTGATCCTGTTTAAAAGTTCCGTTAAGGAGGAATTCATATACTATCTTCTTTATATACAACTAACGAATGCCACCACTGATTTTTGGTTGGCATTTCTGGCTAAACCTGTTCAAATTTATCCAGTTATTGGAGGACATTCTCTTGGYATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29212</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>53036</contig_pos>
        <strand></strand>
        <context>ATTGTGCAGT[T/C]CTCAAAAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTCCAAGTATTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGT</left_flank>
        <right_flank>CTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGCTGCCAATGGGCTGCAGAGAGAAAAACAATCAGGAACAAATCATGTTCGTTAACTAATCAAAATTCATCATTAAAGAAAACAATTTTCTAAAAAGCAACAGGTGTAAATACGATATTAAGTAAAAATTGATTCCATTTTCCAAAAAACTGCCATTCCAAATGATCCAAATAGAACTGAACCCCTATCTTCCGGTTATTGCAAACACCCTTTGCCGGTTGCTTAGATTTAGTCACAAATTGTCCTGTGGTTTATCTGATCCTGTTTAAAAGTTCCGTTAAGGAGGAATTCATATACTATCTTCTTTATATACAACTAACGAATGCCACCACTGATTTTTGGTTGGCATTTCTGGCTAAACCTGTTCAAATTTATCCAGTTATTGGAGGACATTCTCTTGGTATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATCTGGAAGACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTTTGCCTTGAATGTAACTCAAGTTAGTCGGGTTGACTTGAATCTGGGTTTGGTAGAAGCAGTCGGACTTGTAGGTCACGTAATTGACACCAGGTGCCATTGGATCGATTAT</canonical>
            <polymorphic>TCAGCTGCCAATGGGCTGCAGAGAGAAAAACAATCAGGAACAAATCATGTTCGTTAACTAATCAAAATTCATCATTAAAGAAAACAATTTTCTAAAAAGCAACAGGTGTAAATACGATATTAAGTAAAAATTGATTCCATTTTCCAAAAAACTGCCATTCCAAATGATCCAAATAGAACTGAACCCCTATCTTCCGGTTATTGCAAACACCCTTTGCCGGTTGCTTAGATTTAGTCACAAATTGTCCTGTGGTTTATCTGATCCTGTTTAAAAGTTCCGTTAAGGAGGAATTCATATACTATCTTCTTTATATACAACTAACGAATGCCACCACTGATTTTTGGTTGGCATTTCTGGCTAAACCTGTTCAAATTTATCCAGTTATTGGAGGACATTCTCTTGGTATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTYCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATCTGGAAGACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTTTGCCTTGAATGTAACTCAAGTTAGTCGGGTTGACTTGAATCTGGGTTTGGTAGAAGCAGTCGGACTTGTAGGTCACGTAATTGACACCAGGTGCCATTGGATCGATTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTATCCAGTTATTGGAGGAC</pcr_primer_p1>
		<pcr_primer_p2>TGTAATAAAGGATCGCTATAACC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATTTATCCAGTTATTGGAGGACATTCTCTTGGTATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACA</canonical_amplicon>
		<polymorphic_amplicon>AATTTATCCAGTTATTGGAGGACATTCTCTTGGTATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTYCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29213</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>53094</contig_pos>
        <strand></strand>
        <context>CAGTAAATCT[G/T]CATACTGGGW</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCT</left_flank>
        <right_flank>CATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATCAAAATTCATCATTAAAGAAAACAATTTTCTAAAAAGCAACAGGTGTAAATACGATATTAAGTAAAAATTGATTCCATTTTCCAAAAAACTGCCATTCCAAATGATCCAAATAGAACTGAACCCCTATCTTCCGGTTATTGCAAACACCCTTTGCCGGTTGCTTAGATTTAGTCACAAATTGTCCTGTGGTTTATCTGATCCTGTTTAAAAGTTCCGTTAAGGAGGAATTCATATACTATCTTCTTTATATACAACTAACGAATGCCACCACTGATTTTTGGTTGGCATTTCTGGCTAAACCTGTTCAAATTTATCCAGTTATTGGAGGACATTCTCTTGGTATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATCTGGAAGACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTTTGCCTTGAATGTAACTCAAGTTAGTCGGGTTGACTTGAATCTGGGTTTGGTAGAAGCAGTCGGACTTGTAGGTCACGTAATTGACACCAGGTGCCATTGGATCGATTATTTTGACGCAATACTGAAATTAATTAATTAAAGGTGGGGGGACATGAAAAAAAATAATG</canonical>
            <polymorphic>TAATCAAAATTCATCATTAAAGAAAACAATTTTCTAAAAAGCAACAGGTGTAAATACGATATTAAGTAAAAATTGATTCCATTTTCCAAAAAACTGCCATTCCAAATGATCCAAATAGAACTGAACCCCTATCTTCCGGTTATTGCAAACACCCTTTGCCGGTTGCTTAGATTTAGTCACAAATTGTCCTGTGGTTTATCTGATCCTGTTTAAAAGTTCCGTTAAGGAGGAATTCATATACTATCTTCTTTATATACAACTAACGAATGCCACCACTGATTTTTGGTTGGCATTTCTGGCTAAACCTGTTCAAATTTATCCAGTTATTGGAGGACATTCTCTTGGTATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTKCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATCTGGAAGACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTTTGCCTTGAATGTAACTCAAGTTAGTCGGGTTGACTTGAATCTGGGTTTGGTAGAAGCAGTCGGACTTGTAGGTCACGTAATTGACACCAGGTGCCATTGGATCGATTATTTTGACGCAATACTGAAATTAATTAATTAAAGGTGGGGGGACATGAAAAAAAATAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>275 237 225 145 63 55</canonical_bands>
                <polymorphic_bands>288 275 237 145 55</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTATCCAGTTATTGGAGGAC</pcr_primer_p1>
		<pcr_primer_p2>TGTAATAAAGGATCGCTATAACC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATTTATCCAGTTATTGGAGGACATTCTCTTGGTATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACA</canonical_amplicon>
		<polymorphic_amplicon>AATTTATCCAGTTATTGGAGGACATTCTCTTGGTATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTKCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29214</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>53104</contig_pos>
        <strand></strand>
        <context>KCATACTGGG[T/A]ATCTATTCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGG</left_flank>
        <right_flank>ATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATCATTAAAGAAAACAATTTTCTAAAAAGCAACAGGTGTAAATACGATATTAAGTAAAAATTGATTCCATTTTCCAAAAAACTGCCATTCCAAATGATCCAAATAGAACTGAACCCCTATCTTCCGGTTATTGCAAACACCCTTTGCCGGTTGCTTAGATTTAGTCACAAATTGTCCTGTGGTTTATCTGATCCTGTTTAAAAGTTCCGTTAAGGAGGAATTCATATACTATCTTCTTTATATACAACTAACGAATGCCACCACTGATTTTTGGTTGGCATTTCTGGCTAAACCTGTTCAAATTTATCCAGTTATTGGAGGACATTCTCTTGGTATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATCTGGAAGACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTTTGCCTTGAATGTAACTCAAGTTAGTCGGGTTGACTTGAATCTGGGTTTGGTAGAAGCAGTCGGACTTGTAGGTCACGTAATTGACACCAGGTGCCATTGGATCGATTATTTTGACGCAATACTGAAATTAATTAATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAAT</canonical>
            <polymorphic>TCATCATTAAAGAAAACAATTTTCTAAAAAGCAACAGGTGTAAATACGATATTAAGTAAAAATTGATTCCATTTTCCAAAAAACTGCCATTCCAAATGATCCAAATAGAACTGAACCCCTATCTTCCGGTTATTGCAAACACCCTTTGCCGGTTGCTTAGATTTAGTCACAAATTGTCCTGTGGTTTATCTGATCCTGTTTAAAAGTTCCGTTAAGGAGGAATTCATATACTATCTTCTTTATATACAACTAACGAATGCCACCACTGATTTTTGGTTGGCATTTCTGGCTAAACCTGTTCAAATTTATCCAGTTATTGGAGGACATTCTCTTGGTATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGWATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATCTGGAAGACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTTTGCCTTGAATGTAACTCAAGTTAGTCGGGTTGACTTGAATCTGGGTTTGGTAGAAGCAGTCGGACTTGTAGGTCACGTAATTGACACCAGGTGCCATTGGATCGATTATTTTGACGCAATACTGAAATTAATTAATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCATGTTTCTTCAAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTGAGCCGATAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGWATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29215</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>53180</contig_pos>
        <strand></strand>
        <context>CGAAAGAACA[G/T]CAGTTAGART</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACA</left_flank>
        <right_flank>CAGTTAGAATATATAAGACAGGTAAAACATATTGAGAAAATATATCATTT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAAACTGCCATTCCAAATGATCCAAATAGAACTGAACCCCTATCTTCCGGTTATTGCAAACACCCTTTGCCGGTTGCTTAGATTTAGTCACAAATTGTCCTGTGGTTTATCTGATCCTGTTTAAAAGTTCCGTTAAGGAGGAATTCATATACTATCTTCTTTATATACAACTAACGAATGCCACCACTGATTTTTGGTTGGCATTTCTGGCTAAACCTGTTCAAATTTATCCAGTTATTGGAGGACATTCTCTTGGTATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATCTGGAAGACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTTTGCCTTGAATGTAACTCAAGTTAGTCGGGTTGACTTGAATCTGGGTTTGGTAGAAGCAGTCGGACTTGTAGGTCACGTAATTGACACCAGGTGCCATTGGATCGATTATTTTGACGCAATACTGAAATTAATTAATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTTCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAAGGCGATGATTGGGGGTGCGGCGCCGCTACCGACTGAG</canonical>
            <polymorphic>CAAAAAACTGCCATTCCAAATGATCCAAATAGAACTGAACCCCTATCTTCCGGTTATTGCAAACACCCTTTGCCGGTTGCTTAGATTTAGTCACAAATTGTCCTGTGGTTTATCTGATCCTGTTTAAAAGTTCCGTTAAGGAGGAATTCATATACTATCTTCTTTATATACAACTAACGAATGCCACCACTGATTTTTGGTTGGCATTTCTGGCTAAACCTGTTCAAATTTATCCAGTTATTGGAGGACATTCTCTTGGTATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAKCAGTTAGAATATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATCTGGAAGACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTTTGCCTTGAATGTAACTCAAGTTAGTCGGGTTGACTTGAATCTGGGTTTGGTAGAAGCAGTCGGACTTGTAGGTCACGTAATTGACACCAGGTGCCATTGGATCGATTATTTTGACGCAATACTGAAATTAATTAATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTTCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAAGGCGATGATTGGGGGTGCGGCGCCGCTACCGACTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCATGTTTCTTCAAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTGAGCCGATAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAKCAGTTAGAATATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29216</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>53189</contig_pos>
        <strand></strand>
        <context>AKCAGTTAGA[A/G]TATATAAGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGA</left_flank>
        <right_flank>TATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCATTCCAAATGATCCAAATAGAACTGAACCCCTATCTTCCGGTTATTGCAAACACCCTTTGCCGGTTGCTTAGATTTAGTCACAAATTGTCCTGTGGTTTATCTGATCCTGTTTAAAAGTTCCGTTAAGGAGGAATTCATATACTATCTTCTTTATATACAACTAACGAATGCCACCACTGATTTTTGGTTGGCATTTCTGGCTAAACCTGTTCAAATTTATCCAGTTATTGGAGGACATTCTCTTGGTATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATCTGGAAGACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTTTGCCTTGAATGTAACTCAAGTTAGTCGGGTTGACTTGAATCTGGGTTTGGTAGAAGCAGTCGGACTTGTAGGTCACGTAATTGACACCAGGTGCCATTGGATCGATTATTTTGACGCAATACTGAAATTAATTAATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTTCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAAGGCGATGATTGGGGGTGCGGCGCCGCTACCGACTGAGCTACACGGG</canonical>
            <polymorphic>GCCATTCCAAATGATCCAAATAGAACTGAACCCCTATCTTCCGGTTATTGCAAACACCCTTTGCCGGTTGCTTAGATTTAGTCACAAATTGTCCTGTGGTTTATCTGATCCTGTTTAAAAGTTCCGTTAAGGAGGAATTCATATACTATCTTCTTTATATACAACTAACGAATGCCACCACTGATTTTTGGTTGGCATTTCTGGCTAAACCTGTTCAAATTTATCCAGTTATTGGAGGACATTCTCTTGGTATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGARTATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATCTGGAAGACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTTTGCCTTGAATGTAACTCAAGTTAGTCGGGTTGACTTGAATCTGGGTTTGGTAGAAGCAGTCGGACTTGTAGGTCACGTAATTGACACCAGGTGCCATTGGATCGATTATTTTGACGCAATACTGAAATTAATTAATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTTCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAAGGCGATGATTGGGGGTGCGGCGCCGCTACCGACTGAGCTACACGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCATGTTTCTTCAAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTGAGCCGATAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGARTATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29217</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>53205</contig_pos>
        <strand></strand>
        <context>AAGACAGGTA[A/G]RACATATTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTA</left_flank>
        <right_flank>AACATATTGAGAAAATATATCATTTATCGGCTCAAAAACGTATAGACCAA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATAGAACTGAACCCCTATCTTCCGGTTATTGCAAACACCCTTTGCCGGTTGCTTAGATTTAGTCACAAATTGTCCTGTGGTTTATCTGATCCTGTTTAAAAGTTCCGTTAAGGAGGAATTCATATACTATCTTCTTTATATACAACTAACGAATGCCACCACTGATTTTTGGTTGGCATTTCTGGCTAAACCTGTTCAAATTTATCCAGTTATTGGAGGACATTCTCTTGGTATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATCTGGAAGACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTTTGCCTTGAATGTAACTCAAGTTAGTCGGGTTGACTTGAATCTGGGTTTGGTAGAAGCAGTCGGACTTGTAGGTCACGTAATTGACACCAGGTGCCATTGGATCGATTATTTTGACGCAATACTGAAATTAATTAATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTTCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAAGGCGATGATTGGGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAAAAAAAGCGGTC</canonical>
            <polymorphic>CAAATAGAACTGAACCCCTATCTTCCGGTTATTGCAAACACCCTTTGCCGGTTGCTTAGATTTAGTCACAAATTGTCCTGTGGTTTATCTGATCCTGTTTAAAAGTTCCGTTAAGGAGGAATTCATATACTATCTTCTTTATATACAACTAACGAATGCCACCACTGATTTTTGGTTGGCATTTCTGGCTAAACCTGTTCAAATTTATCCAGTTATTGGAGGACATTCTCTTGGTATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTARAACATATTGAGAAAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATCTGGAAGACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTTTGCCTTGAATGTAACTCAAGTTAGTCGGGTTGACTTGAATCTGGGTTTGGTAGAAGCAGTCGGACTTGTAGGTCACGTAATTGACACCAGGTGCCATTGGATCGATTATTTTGACGCAATACTGAAATTAATTAATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTTCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAAGGCGATGATTGGGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAAAAAAAGCGGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTTATTCGCTTTGGTTATAG</pcr_primer_p1>
		<pcr_primer_p2>TCTAGACTGAGACTTTTTAGATGGT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGA</canonical_amplicon>
		<polymorphic_amplicon>TCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTARAACATATTGAGAAAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29218</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>53206</contig_pos>
        <strand></strand>
        <context>AGACAGGTAR[A/G]ACATATTGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTAA</left_flank>
        <right_flank>ACATATTGAGAAAATATATCATTTATCGGCTCAAAAACGTATAGACCAAT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATAGAACTGAACCCCTATCTTCCGGTTATTGCAAACACCCTTTGCCGGTTGCTTAGATTTAGTCACAAATTGTCCTGTGGTTTATCTGATCCTGTTTAAAAGTTCCGTTAAGGAGGAATTCATATACTATCTTCTTTATATACAACTAACGAATGCCACCACTGATTTTTGGTTGGCATTTCTGGCTAAACCTGTTCAAATTTATCCAGTTATTGGAGGACATTCTCTTGGTATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATCTGGAAGACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTTTGCCTTGAATGTAACTCAAGTTAGTCGGGTTGACTTGAATCTGGGTTTGGTAGAAGCAGTCGGACTTGTAGGTCACGTAATTGACACCAGGTGCCATTGGATCGATTATTTTGACGCAATACTGAAATTAATTAATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTTCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAAGGCGATGATTGGGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAAAAAAAGCGGTCG</canonical>
            <polymorphic>AAATAGAACTGAACCCCTATCTTCCGGTTATTGCAAACACCCTTTGCCGGTTGCTTAGATTTAGTCACAAATTGTCCTGTGGTTTATCTGATCCTGTTTAAAAGTTCCGTTAAGGAGGAATTCATATACTATCTTCTTTATATACAACTAACGAATGCCACCACTGATTTTTGGTTGGCATTTCTGGCTAAACCTGTTCAAATTTATCCAGTTATTGGAGGACATTCTCTTGGTATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTAARACATATTGAGAAAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATCTGGAAGACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTTTGCCTTGAATGTAACTCAAGTTAGTCGGGTTGACTTGAATCTGGGTTTGGTAGAAGCAGTCGGACTTGTAGGTCACGTAATTGACACCAGGTGCCATTGGATCGATTATTTTGACGCAATACTGAAATTAATTAATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTTCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAAGGCGATGATTGGGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAAAAAAAGCGGTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTTATTCGCTTTGGTTATAG</pcr_primer_p1>
		<pcr_primer_p2>TCTAGACTGAGACTTTTTAGATGGT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGA</canonical_amplicon>
		<polymorphic_amplicon>TCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTAARACATATTGAGAAAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29219</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>53287</contig_pos>
        <strand></strand>
        <context>CCATCCAAAA[G/C]CAATCRCTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAA</left_flank>
        <right_flank>CAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTATCTGATCCTGTTTAAAAGTTCCGTTAAGGAGGAATTCATATACTATCTTCTTTATATACAACTAACGAATGCCACCACTGATTTTTGGTTGGCATTTCTGGCTAAACCTGTTCAAATTTATCCAGTTATTGGAGGACATTCTCTTGGTATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATCTGGAAGACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTTTGCCTTGAATGTAACTCAAGTTAGTCGGGTTGACTTGAATCTGGGTTTGGTAGAAGCAGTCGGACTTGTAGGTCACGTAATTGACACCAGGTGCCATTGGATCGATTATTTTGACGCAATACTGAAATTAATTAATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTTCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAAGGCGATGATTGGGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAAAAAAAGCGGTCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCA</canonical>
            <polymorphic>GTTTATCTGATCCTGTTTAAAAGTTCCGTTAAGGAGGAATTCATATACTATCTTCTTTATATACAACTAACGAATGCCACCACTGATTTTTGGTTGGCATTTCTGGCTAAACCTGTTCAAATTTATCCAGTTATTGGAGGACATTCTCTTGGTATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAASCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATCTGGAAGACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTTTGCCTTGAATGTAACTCAAGTTAGTCGGGTTGACTTGAATCTGGGTTTGGTAGAAGCAGTCGGACTTGTAGGTCACGTAATTGACACCAGGTGCCATTGGATCGATTATTTTGACGCAATACTGAAATTAATTAATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTTCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAAGGCGATGATTGGGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAAAAAAAGCGGTCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATATATCATTTATCGGCTCAA</pcr_primer_p1>
		<pcr_primer_p2>ATTCAAGTCAACCCGACTAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATCTGGAAGACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTTTGCCTTGAATGTAACTCAAGTTAGTCGGGTTGACTTGAAT</canonical_amplicon>
		<polymorphic_amplicon>AAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAASCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATCTGGAAGACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTTTGCCTTGAATGTAACTCAAGTTAGTCGGGTTGACTTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29220</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>53293</contig_pos>
        <strand></strand>
        <context>AAAASCAATC[G/A]CTGAGTTACA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATC</left_flank>
        <right_flank>CTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGATCCTGTTTAAAAGTTCCGTTAAGGAGGAATTCATATACTATCTTCTTTATATACAACTAACGAATGCCACCACTGATTTTTGGTTGGCATTTCTGGCTAAACCTGTTCAAATTTATCCAGTTATTGGAGGACATTCTCTTGGTATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATCTGGAAGACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTTTGCCTTGAATGTAACTCAAGTTAGTCGGGTTGACTTGAATCTGGGTTTGGTAGAAGCAGTCGGACTTGTAGGTCACGTAATTGACACCAGGTGCCATTGGATCGATTATTTTGACGCAATACTGAAATTAATTAATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTTCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAAGGCGATGATTGGGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAAAAAAAGCGGTCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCT</canonical>
            <polymorphic>CTGATCCTGTTTAAAAGTTCCGTTAAGGAGGAATTCATATACTATCTTCTTTATATACAACTAACGAATGCCACCACTGATTTTTGGTTGGCATTTCTGGCTAAACCTGTTCAAATTTATCCAGTTATTGGAGGACATTCTCTTGGTATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCRCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATCTGGAAGACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTTTGCCTTGAATGTAACTCAAGTTAGTCGGGTTGACTTGAATCTGGGTTTGGTAGAAGCAGTCGGACTTGTAGGTCACGTAATTGACACCAGGTGCCATTGGATCGATTATTTTGACGCAATACTGAAATTAATTAATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTTCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAAGGCGATGATTGGGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAAAAAAAGCGGTCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATATATCATTTATCGGCTCAA</pcr_primer_p1>
		<pcr_primer_p2>ATTCAAGTCAACCCGACTAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATCTGGAAGACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTTTGCCTTGAATGTAACTCAAGTTAGTCGGGTTGACTTGAAT</canonical_amplicon>
		<polymorphic_amplicon>AAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCRCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATCTGGAAGACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTTTGCCTTGAATGTAACTCAAGTTAGTCGGGTTGACTTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29221</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>53361</contig_pos>
        <strand></strand>
        <context>GTCTAGAATC[T/A]CACCAAAATC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATC</left_flank>
        <right_flank>CACCAAAATCTGGAAGACGTTACCGTTTAACTGGCGCCGATCCATCCTGA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCCACCACTGATTTTTGGTTGGCATTTCTGGCTAAACCTGTTCAAATTTATCCAGTTATTGGAGGACATTCTCTTGGTATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATCTGGAAGACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTTTGCCTTGAATGTAACTCAAGTTAGTCGGGTTGACTTGAATCTGGGTTTGGTAGAAGCAGTCGGACTTGTAGGTCACGTAATTGACACCAGGTGCCATTGGATCGATTATTTTGACGCAATACTGAAATTAATTAATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTTCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAAGGCGATGATTGGGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAAAAAAAGCGGTCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCAAAAAACCCCCGTAAAATCTCCTGTCCCCCCACCTTTAATTAATTTTTTTGCTAGCGTGATT</canonical>
            <polymorphic>TGCCACCACTGATTTTTGGTTGGCATTTCTGGCTAAACCTGTTCAAATTTATCCAGTTATTGGAGGACATTCTCTTGGTATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCWCACCAAAATCTGGAAGACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTTTGCCTTGAATGTAACTCAAGTTAGTCGGGTTGACTTGAATCTGGGTTTGGTAGAAGCAGTCGGACTTGTAGGTCACGTAATTGACACCAGGTGCCATTGGATCGATTATTTTGACGCAATACTGAAATTAATTAATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTTCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAAGGCGATGATTGGGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAAAAAAAGCGGTCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCAAAAAACCCCCGTAAAATCTCCTGTCCCCCCACCTTTAATTAATTTTTTTGCTAGCGTGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGACCAATGGTAAAACAATAGAG</pcr_primer_p1>
		<pcr_primer_p2>CTACAAGTCCGACTGCTTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATCTGGAAGACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTTTGCCTTGAATGTAACTCAAGTTAGTCGGGTTGACTTGAATCTGGGTTTGGTAGAAGCAGTCGGACTTGTAG</canonical_amplicon>
		<polymorphic_amplicon>AGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCWCACCAAAATCTGGAAGACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTTTGCCTTGAATGTAACTCAAGTTAGTCGGGTTGACTTGAATCTGGGTTTGGTAGAAGCAGTCGGACTTGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29222</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>53377</contig_pos>
        <strand></strand>
        <context>AAATCTGGAA[G/A]ACGTTACCGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATCTGGAA</left_flank>
        <right_flank>ACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTTGGCATTTCTGGCTAAACCTGTTCAAATTTATCCAGTTATTGGAGGACATTCTCTTGGTATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATCTGGAAGACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTTTGCCTTGAATGTAACTCAAGTTAGTCGGGTTGACTTGAATCTGGGTTTGGTAGAAGCAGTCGGACTTGTAGGTCACGTAATTGACACCAGGTGCCATTGGATCGATTATTTTGACGCAATACTGAAATTAATTAATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTTCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAAGGCGATGATTGGGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAAAAAAAGCGGTCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCAAAAAACCCCCGTAAAATCTCCTGTCCCCCCACCTTTAATTAATTTTTTTGCTAGCGTGATTGGGTACCTGAGTGGTC</canonical>
            <polymorphic>TGGTTGGCATTTCTGGCTAAACCTGTTCAAATTTATCCAGTTATTGGAGGACATTCTCTTGGTATATTGTATAGCTGGTTTCGGATCTCGTGTCATGTGCAAGCGACTGTCCAAGTATTTTTCATGTTTCTTCAAAAGTGCGCAATCTATTGTGCAGTTCTCAAAAAACATCAAAGTATCGTCGCAATCAATAATAACTGGGTGCTCAGTAAATCTGCATACTGGGTATCTATTCTCTTGGTTCATTTATTCGCTTTGGTTATAGCGATCCTTTATTACAATGGTAATCTCACGAAAGAACAGCAGTTAGAATATATAAGACAGGTAAAACATATTGAGAAAATATATCATTTATCGGCTCAAAAACGTATAGACCAATGGTAAAACAATAGAGGGAACCCATCCAAAAGCAATCGCTGAGTTACAGTAATCCCGATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATCTGGAARACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTTTGCCTTGAATGTAACTCAAGTTAGTCGGGTTGACTTGAATCTGGGTTTGGTAGAAGCAGTCGGACTTGTAGGTCACGTAATTGACACCAGGTGCCATTGGATCGATTATTTTGACGCAATACTGAAATTAATTAATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTTCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAAGGCGATGATTGGGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAAAAAAAGCGGTCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCAAAAAACCCCCGTAAAATCTCCTGTCCCCCCACCTTTAATTAATTTTTTTGCTAGCGTGATTGGGTACCTGAGTGGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCGTTGCAAAAACAGTAGTA</pcr_primer_p1>
		<pcr_primer_p2>ATTAATTTCAGTATTGCGTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATCTGGAAGACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTTTGCCTTGAATGTAACTCAAGTTAGTCGGGTTGACTTGAATCTGGGTTTGGTAGAAGCAGTCGGACTTGTAGGTCACGTAATTGACACCAGGTGCCATTGGATCGATTATTTTGACGCAATACTGAAATTAAT</canonical_amplicon>
		<polymorphic_amplicon>GATCGTTGCAAAAACAGTAGTACCATCTAAAAAGTCTCAGTCTAGAATCTCACCAAAATCTGGAARACGTTACCGTTTAACTGGCGCCGATCCATCCTGATATGGGAAGCAGGTTTTGCCTTGAATGTAACTCAAGTTAGTCGGGTTGACTTGAATCTGGGTTTGGTAGAAGCAGTCGGACTTGTAGGTCACGTAATTGACACCAGGTGCCATTGGATCGATTATTTTGACGCAATACTGAAATTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29223</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>54155</contig_pos>
        <strand></strand>
        <context>ataaattgtt[C/A]accataatat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTT</left_flank>
        <right_flank>ACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAAAAAAAGCGGTCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCAAAAAACCCCCGTAAAATCTCCTGTCCCCCCACCTTTAATTAATTTTTTTGCTAGCGTGATTGGGTACCTGAGTGGTCTGACACTGATTGTTTCGGTTGTCACAAGTAGCAGACGTCGAATATCTGAAATGGAGGAGCTTTTGAATTCTCAAAGCGACTTTTGAAGCTTACCGTAATGGATAGTCGCCATGCCAACCGTTACATTGATAGCAGTTGAGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACATTTTTGGAAAATTCGAATTTCTGTTTGAATCAGAGAGTAAAAAATAAATCTATGAAAAAATACTTAATTCGACAAGACAAGGTCTTCAACGTAATAAATTATTTCAATTGCGCTAAATTATTAAGCCACGGGTCGCAGCTACCGCTGCTCTTGAGGCCTAATTATCCTGGGCTCCTCTGTAAGATACTAAAAATTTGTAAGGTTTAAAGCTAACTTTAGAAGGTCCTTCTATTACAGGTGTCGCGGTAAACTGTCATAATCAAGTAAGACCACAACACCCTTATTATCAAACTCAAGCTTATAGACAATTCAAAAAAAAACTAACCTATCGAACCAAAAACAAGTAGAATCCAAATTTCGAGCTGCATCGAAAACGTAAA</canonical>
            <polymorphic>GGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAAAAAAAGCGGTCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCAAAAAACCCCCGTAAAATCTCCTGTCCCCCCACCTTTAATTAATTTTTTTGCTAGCGTGATTGGGTACCTGAGTGGTCTGACACTGATTGTTTCGGTTGTCACAAGTAGCAGACGTCGAATATCTGAAATGGAGGAGCTTTTGAATTCTCAAAGCGACTTTTGAAGCTTACCGTAATGGATAGTCGCCATGCCAACCGTTACATTGATAGCAGTTGAGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTMACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACATTTTTGGAAAATTCGAATTTCTGTTTGAATCAGAGAGTAAAAAATAAATCTATGAAAAAATACTTAATTCGACAAGACAAGGTCTTCAACGTAATAAATTATTTCAATTGCGCTAAATTATTAAGCCACGGGTCGCAGCTACCGCTGCTCTTGAGGCCTAATTATCCTGGGCTCCTCTGTAAGATACTAAAAATTTGTAAGGTTTAAAGCTAACTTTAGAAGGTCCTTCTATTACAGGTGTCGCGGTAAACTGTCATAATCAAGTAAGACCACAACACCCTTATTATCAAACTCAAGCTTATAGACAATTCAAAAAAAAACTAACCTATCGAACCAAAAACAAGTAGAATCCAAATTTCGAGCTGCATCGAAAACGTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>160 130 117 112 103 67 66 56 32 27 25 19 17 17 16 12 8 6 5 5</canonical_bands>
                <polymorphic_bands>183 160 130 112 103 67 56 32 27 25 19 17 17 16 12 8 6 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGCATAGGTATCTGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGTGTTCAGGAAAATACTCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>AGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACA</canonical_amplicon>
		<polymorphic_amplicon>AGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTMACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29224</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>54202</contig_pos>
        <strand></strand>
        <context>ttttgatatc[T/C]ttcaaaataa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATC</left_flank>
        <right_flank>TTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGTATCT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCAAAAAACCCCCGTAAAATCTCCTGTCCCCCCACCTTTAATTAATTTTTTTGCTAGCGTGATTGGGTACCTGAGTGGTCTGACACTGATTGTTTCGGTTGTCACAAGTAGCAGACGTCGAATATCTGAAATGGAGGAGCTTTTGAATTCTCAAAGCGACTTTTGAAGCTTACCGTAATGGATAGTCGCCATGCCAACCGTTACATTGATAGCAGTTGAGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACATTTTTGGAAAATTCGAATTTCTGTTTGAATCAGAGAGTAAAAAATAAATCTATGAAAAAATACTTAATTCGACAAGACAAGGTCTTCAACGTAATAAATTATTTCAATTGCGCTAAATTATTAAGCCACGGGTCGCAGCTACCGCTGCTCTTGAGGCCTAATTATCCTGGGCTCCTCTGTAAGATACTAAAAATTTGTAAGGTTTAAAGCTAACTTTAGAAGGTCCTTCTATTACAGGTGTCGCGGTAAACTGTCATAATCAAGTAAGACCACAACACCCTTATTATCAAACTCAAGCTTATAGACAATTCAAAAAAAAACTAACCTATCGAACCAAAAACAAGTAGAATCCAAATTTCGAGCTGCATCGAAAACGTAAAATCTTGAGGATGAGGTGTTTCGAGAAGGGCAAAAAAGAGAGAATAAA</canonical>
            <polymorphic>GTCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCAAAAAACCCCCGTAAAATCTCCTGTCCCCCCACCTTTAATTAATTTTTTTGCTAGCGTGATTGGGTACCTGAGTGGTCTGACACTGATTGTTTCGGTTGTCACAAGTAGCAGACGTCGAATATCTGAAATGGAGGAGCTTTTGAATTCTCAAAGCGACTTTTGAAGCTTACCGTAATGGATAGTCGCCATGCCAACCGTTACATTGATAGCAGTTGAGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCYTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACATTTTTGGAAAATTCGAATTTCTGTTTGAATCAGAGAGTAAAAAATAAATCTATGAAAAAATACTTAATTCGACAAGACAAGGTCTTCAACGTAATAAATTATTTCAATTGCGCTAAATTATTAAGCCACGGGTCGCAGCTACCGCTGCTCTTGAGGCCTAATTATCCTGGGCTCCTCTGTAAGATACTAAAAATTTGTAAGGTTTAAAGCTAACTTTAGAAGGTCCTTCTATTACAGGTGTCGCGGTAAACTGTCATAATCAAGTAAGACCACAACACCCTTATTATCAAACTCAAGCTTATAGACAATTCAAAAAAAAACTAACCTATCGAACCAAAAACAAGTAGAATCCAAATTTCGAGCTGCATCGAAAACGTAAAATCTTGAGGATGAGGTGTTTCGAGAAGGGCAAAAAAGAGAGAATAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGCATAGGTATCTGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGTGTTCAGGAAAATACTCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>AGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACA</canonical_amplicon>
		<polymorphic_amplicon>AGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCYTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29225</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>54218</contig_pos>
        <strand></strand>
        <context>aataaccgag[A/T]gcawtgagct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAG</left_flank>
        <right_flank>GCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCAAAAAACCCCCGTAAAATCTCCTGTCCCCCCACCTTTAATTAATTTTTTTGCTAGCGTGATTGGGTACCTGAGTGGTCTGACACTGATTGTTTCGGTTGTCACAAGTAGCAGACGTCGAATATCTGAAATGGAGGAGCTTTTGAATTCTCAAAGCGACTTTTGAAGCTTACCGTAATGGATAGTCGCCATGCCAACCGTTACATTGATAGCAGTTGAGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACATTTTTGGAAAATTCGAATTTCTGTTTGAATCAGAGAGTAAAAAATAAATCTATGAAAAAATACTTAATTCGACAAGACAAGGTCTTCAACGTAATAAATTATTTCAATTGCGCTAAATTATTAAGCCACGGGTCGCAGCTACCGCTGCTCTTGAGGCCTAATTATCCTGGGCTCCTCTGTAAGATACTAAAAATTTGTAAGGTTTAAAGCTAACTTTAGAAGGTCCTTCTATTACAGGTGTCGCGGTAAACTGTCATAATCAAGTAAGACCACAACACCCTTATTATCAAACTCAAGCTTATAGACAATTCAAAAAAAAACTAACCTATCGAACCAAAAACAAGTAGAATCCAAATTTCGAGCTGCATCGAAAACGTAAAATCTTGAGGATGAGGTGTTTCGAGAAGGGCAAAAAAGAGAGAATAAAATAACAAGGCGGAAAA</canonical>
            <polymorphic>CATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCAAAAAACCCCCGTAAAATCTCCTGTCCCCCCACCTTTAATTAATTTTTTTGCTAGCGTGATTGGGTACCTGAGTGGTCTGACACTGATTGTTTCGGTTGTCACAAGTAGCAGACGTCGAATATCTGAAATGGAGGAGCTTTTGAATTCTCAAAGCGACTTTTGAAGCTTACCGTAATGGATAGTCGCCATGCCAACCGTTACATTGATAGCAGTTGAGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGWGCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACATTTTTGGAAAATTCGAATTTCTGTTTGAATCAGAGAGTAAAAAATAAATCTATGAAAAAATACTTAATTCGACAAGACAAGGTCTTCAACGTAATAAATTATTTCAATTGCGCTAAATTATTAAGCCACGGGTCGCAGCTACCGCTGCTCTTGAGGCCTAATTATCCTGGGCTCCTCTGTAAGATACTAAAAATTTGTAAGGTTTAAAGCTAACTTTAGAAGGTCCTTCTATTACAGGTGTCGCGGTAAACTGTCATAATCAAGTAAGACCACAACACCCTTATTATCAAACTCAAGCTTATAGACAATTCAAAAAAAAACTAACCTATCGAACCAAAAACAAGTAGAATCCAAATTTCGAGCTGCATCGAAAACGTAAAATCTTGAGGATGAGGTGTTTCGAGAAGGGCAAAAAAGAGAGAATAAAATAACAAGGCGGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGCATAGGTATCTGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGTGTTCAGGAAAATACTCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>AGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACA</canonical_amplicon>
		<polymorphic_amplicon>AGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGWGCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29226</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>54222</contig_pos>
        <strand></strand>
        <context>accgagwgca[A/T]tgagctcaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCA</left_flank>
        <right_flank>TGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGCGAGGACGACAGCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCAAAAAACCCCCGTAAAATCTCCTGTCCCCCCACCTTTAATTAATTTTTTTGCTAGCGTGATTGGGTACCTGAGTGGTCTGACACTGATTGTTTCGGTTGTCACAAGTAGCAGACGTCGAATATCTGAAATGGAGGAGCTTTTGAATTCTCAAAGCGACTTTTGAAGCTTACCGTAATGGATAGTCGCCATGCCAACCGTTACATTGATAGCAGTTGAGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACATTTTTGGAAAATTCGAATTTCTGTTTGAATCAGAGAGTAAAAAATAAATCTATGAAAAAATACTTAATTCGACAAGACAAGGTCTTCAACGTAATAAATTATTTCAATTGCGCTAAATTATTAAGCCACGGGTCGCAGCTACCGCTGCTCTTGAGGCCTAATTATCCTGGGCTCCTCTGTAAGATACTAAAAATTTGTAAGGTTTAAAGCTAACTTTAGAAGGTCCTTCTATTACAGGTGTCGCGGTAAACTGTCATAATCAAGTAAGACCACAACACCCTTATTATCAAACTCAAGCTTATAGACAATTCAAAAAAAAACTAACCTATCGAACCAAAAACAAGTAGAATCCAAATTTCGAGCTGCATCGAAAACGTAAAATCTTGAGGATGAGGTGTTTCGAGAAGGGCAAAAAAGAGAGAATAAAATAACAAGGCGGAAAAAGCG</canonical>
            <polymorphic>AAGGCGAGGACGACAGCTGTACGCAGAGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCAAAAAACCCCCGTAAAATCTCCTGTCCCCCCACCTTTAATTAATTTTTTTGCTAGCGTGATTGGGTACCTGAGTGGTCTGACACTGATTGTTTCGGTTGTCACAAGTAGCAGACGTCGAATATCTGAAATGGAGGAGCTTTTGAATTCTCAAAGCGACTTTTGAAGCTTACCGTAATGGATAGTCGCCATGCCAACCGTTACATTGATAGCAGTTGAGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCAWTGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACATTTTTGGAAAATTCGAATTTCTGTTTGAATCAGAGAGTAAAAAATAAATCTATGAAAAAATACTTAATTCGACAAGACAAGGTCTTCAACGTAATAAATTATTTCAATTGCGCTAAATTATTAAGCCACGGGTCGCAGCTACCGCTGCTCTTGAGGCCTAATTATCCTGGGCTCCTCTGTAAGATACTAAAAATTTGTAAGGTTTAAAGCTAACTTTAGAAGGTCCTTCTATTACAGGTGTCGCGGTAAACTGTCATAATCAAGTAAGACCACAACACCCTTATTATCAAACTCAAGCTTATAGACAATTCAAAAAAAAACTAACCTATCGAACCAAAAACAAGTAGAATCCAAATTTCGAGCTGCATCGAAAACGTAAAATCTTGAGGATGAGGTGTTTCGAGAAGGGCAAAAAAGAGAGAATAAAATAACAAGGCGGAAAAAGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGCATAGGTATCTGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATGTGTTCAGGAAAATACTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>AGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACAT</canonical_amplicon>
		<polymorphic_amplicon>AGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCAWTGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29227</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>54248</contig_pos>
        <strand></strand>
        <context>gaatggcggg[T/C]atcTATTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TATCTTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGG</left_flank>
        <right_flank>ATCTATTTGAGTATTTTCCTGAACACATTTTTGGAAAATTCGAATTTCTG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCAAAAAACCCCCGTAAAATCTCCTGTCCCCCCACCTTTAATTAATTTTTTTGCTAGCGTGATTGGGTACCTGAGTGGTCTGACACTGATTGTTTCGGTTGTCACAAGTAGCAGACGTCGAATATCTGAAATGGAGGAGCTTTTGAATTCTCAAAGCGACTTTTGAAGCTTACCGTAATGGATAGTCGCCATGCCAACCGTTACATTGATAGCAGTTGAGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACATTTTTGGAAAATTCGAATTTCTGTTTGAATCAGAGAGTAAAAAATAAATCTATGAAAAAATACTTAATTCGACAAGACAAGGTCTTCAACGTAATAAATTATTTCAATTGCGCTAAATTATTAAGCCACGGGTCGCAGCTACCGCTGCTCTTGAGGCCTAATTATCCTGGGCTCCTCTGTAAGATACTAAAAATTTGTAAGGTTTAAAGCTAACTTTAGAAGGTCCTTCTATTACAGGTGTCGCGGTAAACTGTCATAATCAAGTAAGACCACAACACCCTTATTATCAAACTCAAGCTTATAGACAATTCAAAAAAAAACTAACCTATCGAACCAAAAACAAGTAGAATCCAAATTTCGAGCTGCATCGAAAACGTAAAATCTTGAGGATGAGGTGTTTCGAGAAGGGCAAAAAAGAGAGAATAAAATAACAAGGCGGAAAAAGCGCGCGCTTCGTCTCCAACCTGGTGGTG</canonical>
            <polymorphic>AGTGACATTTAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCAAAAAACCCCCGTAAAATCTCCTGTCCCCCCACCTTTAATTAATTTTTTTGCTAGCGTGATTGGGTACCTGAGTGGTCTGACACTGATTGTTTCGGTTGTCACAAGTAGCAGACGTCGAATATCTGAAATGGAGGAGCTTTTGAATTCTCAAAGCGACTTTTGAAGCTTACCGTAATGGATAGTCGCCATGCCAACCGTTACATTGATAGCAGTTGAGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGYATCTATTTGAGTATTTTCCTGAACACATTTTTGGAAAATTCGAATTTCTGTTTGAATCAGAGAGTAAAAAATAAATCTATGAAAAAATACTTAATTCGACAAGACAAGGTCTTCAACGTAATAAATTATTTCAATTGCGCTAAATTATTAAGCCACGGGTCGCAGCTACCGCTGCTCTTGAGGCCTAATTATCCTGGGCTCCTCTGTAAGATACTAAAAATTTGTAAGGTTTAAAGCTAACTTTAGAAGGTCCTTCTATTACAGGTGTCGCGGTAAACTGTCATAATCAAGTAAGACCACAACACCCTTATTATCAAACTCAAGCTTATAGACAATTCAAAAAAAAACTAACCTATCGAACCAAAAACAAGTAGAATCCAAATTTCGAGCTGCATCGAAAACGTAAAATCTTGAGGATGAGGTGTTTCGAGAAGGGCAAAAAAGAGAGAATAAAATAACAAGGCGGAAAAAGCGCGCGCTTCGTCTCCAACCTGGTGGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGCATAGGTATCTGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCTTGTCTTGTCGAATTAAGTAT</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>AGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGTATCTATTTGAGTATTTTCCTGAACACATTTTTGGAAAATTCGAATTTCTGTTTGAATCAGAGAGTAAAAAATAAATCTATGAAAAAATACTTAATTCGACAAGACAAGG</canonical_amplicon>
		<polymorphic_amplicon>AGAGCATAGGTATCTGGAAAAAATACTATTGGCTGAAAGCTTAGTGTCCTACCCTACATATCACTTATATAAACACTTTGAGCTCAATTATCTTGGTTCCATTGAGAGATATCAAAAACATTTTAACTGATAAATTGTTCACCATAATATCAGCAACATTTCATCAGTTGACATATTTTTGATATCTTTCAAAATAACCGAGAGCAATGAGCTCAAAATAAAGAATGGCGGGYATCTATTTGAGTATTTTCCTGAACACATTTTTGGAAAATTCGAATTTCTGTTTGAATCAGAGAGTAAAAAATAAATCTATGAAAAAATACTTAATTCGACAAGACAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29228</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>60003</contig_pos>
        <strand>+</strand>
        <context>TACTGTAACT[C/T]TGAAAAATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTTGTTACCAGCTGAGCTAAAATACATACCGTAATTGAATACTGTAACT</left_flank>
        <right_flank>TGAAAAATTCCGAAAAAATCTAAAATTCCGAAAAAAAATCTCCTGTCTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCAATTATTTTTATTTTGAAGGAAAATCATATTTTTCTAGGGAATCTGTACTCTACAGGTATCGTGCTCTAGAGATATCGTACTCGAAAGGTATCGTGCTCTTGAGTTACCGTACTCTACAGGTATCGTACCTTAGTGGTACCGTACCCTAGAGGTATCGTACTCTTGAGGTATCGTACTCTAGAGGTATCGTATCCTCGAGGTATCGTATCCTCGAGGTATCGTACTCTTGATGTACCGTACCATTAAGATACCGAACCCTCGAGGTACCGTATCCTTGAGATACCAAACATTTGAGGTACCGTCCTCAAAATGTATCGTATTCTTGAGATATCGTGCCCTTAAGATACCGTATCCTTAAGTGCAGGAATGAAGGAACAAAAATGAATAATATAACTGTAAGCCCCTCAAGAAGTTGAAATTGTGGGCTCACCGTTTGAGGTGCTGGGTTGTTACCAGCTGAGCTAAAATACATACCGTAATTGAATACTGTAACTCTGAAAAATTCCGAAAAAATCTAAAATTCCGAAAAAAAATCTCCTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCCCTGCAAAATTACATTTATCATATTTCGACAAAATCCATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGTTTGTGCGATCTGTGCTAGAATTTAGTTTTTAAAGGCTTAAAATGAAAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTACGTTAGTGATCACCGATGTCTTATTGGACGATATCTTTGAAAGATGAGATTCCTGTGTCTTGAGAAAAATAACAAACAACATCTTTCTCTGATTTCTATCTTGACCATTGGTCCTCTAGGAAAT</canonical>
            <polymorphic>TTTCAATTATTTTTATTTTGAAGGAAAATCATATTTTTCTAGGGAATCTGTACTCTACAGGTATCGTGCTCTAGAGATATCGTACTCGAAAGGTATCGTGCTCTTGAGTTACCGTACTCTACAGGTATCGTACCTTAGTGGTACCGTACCCTAGAGGTATCGTACTCTTGAGGTATCGTACTCTAGAGGTATCGTATCCTCGAGGTATCGTATCCTCGAGGTATCGTACTCTTGATGTACCGTACCATTAAGATACCGAACCCTCGAGGTACCGTATCCTTGAGATACCAAACATTTGAGGTACCGTCCTCAAAATGTATCGTATTCTTGAGATATCGTGCCCTTAAGATACCGTATCCTTAAGTGCAGGAATGAAGGAACAAAAATGAATAATATAACTGTAAGCCCCTCAAGAAGTTGAAATTGTGGGCTCACCGTTTGAGGTGCTGGGTTGTTACCAGCTGAGCTAAAATACATACCGTAATTGAATACTGTAACTYTGAAAAATTCCGAAAAAATCTAAAATTCCGAAAAAAAATCTCCTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCCCTGCAAAATTACATTTATCATATTTCGACAAAATCCATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGTTTGTGCGATCTGTGCTAGAATTTAGTTTTTAAAGGCTTAAAATGAAAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTACGTTAGTGATCACCGATGTCTTATTGGACGATATCTTTGAAAGATGAGATTCCTGTGTCTTGAGAAAAATAACAAACAACATCTTTCTCTGATTTCTATCTTGACCATTGGTCCTCTAGGAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>501 437 34 18 10</canonical_bands>
                <polymorphic_bands>511 437 34 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTCAAAATGTATCGTATTCTTG</pcr_primer_p1>
		<pcr_primer_p2>ATGGAGGAGAGACAGGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTCAAAATGTATCGTATTCTTGAGATATCGTGCCCTTAAGATACCGTATCCTTAAGTGCAGGAATGAAGGAACAAAAATGAATAATATAACTGTAAGCCCCTCAAGAAGTTGAAATTGTGGGCTCACCGTTTGAGGTGCTGGGTTGTTACCAGCTGAGCTAAAATACATACCGTAATTGAATACTGTAACTCTGAAAAATTCCGAAAAAATCTAAAATTCCGAAAAAAAATCTCCTGTCTCTCCTCCAT</canonical_amplicon>
		<polymorphic_amplicon>CCTCAAAATGTATCGTATTCTTGAGATATCGTGCCCTTAAGATACCGTATCCTTAAGTGCAGGAATGAAGGAACAAAAATGAATAATATAACTGTAAGCCCCTCAAGAAGTTGAAATTGTGGGCTCACCGTTTGAGGTGCTGGGTTGTTACCAGCTGAGCTAAAATACATACCGTAATTGAATACTGTAACTYTGAAAAATTCCGAAAAAATCTAAAATTCCGAAAAAAAATCTCCTGTCTCTCCTCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29229</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>60123</contig_pos>
        <strand>+</strand>
        <context>TTTTATTTGG[A/C]AAAAAAAAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GACAACGTTTTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGG</left_flank>
        <right_flank>AAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCCCTGCAAAATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGGTATCGTACCTTAGTGGTACCGTACCCTAGAGGTATCGTACTCTTGAGGTATCGTACTCTAGAGGTATCGTATCCTCGAGGTATCGTATCCTCGAGGTATCGTACTCTTGATGTACCGTACCATTAAGATACCGAACCCTCGAGGTACCGTATCCTTGAGATACCAAACATTTGAGGTACCGTCCTCAAAATGTATCGTATTCTTGAGATATCGTGCCCTTAAGATACCGTATCCTTAAGTGCAGGAATGAAGGAACAAAAATGAATAATATAACTGTAAGCCCCTCAAGAAGTTGAAATTGTGGGCTCACCGTTTGAGGTGCTGGGTTGTTACCAGCTGAGCTAAAATACATACCGTAATTGAATACTGTAACTCTGAAAAATTCCGAAAAAATCTAAAATTCCGAAAAAAAATCTCCTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCCCTGCAAAATTACATTTATCATATTTCGACAAAATCCATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGTTTGTGCGATCTGTGCTAGAATTTAGTTTTTAAAGGCTTAAAATGAAAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTACGTTAGTGATCACCGATGTCTTATTGGACGATATCTTTGAAAGATGAGATTCCTGTGTCTTGAGAAAAATAACAAACAACATCTTTCTCTGATTTCTATCTTGACCATTGGTCCTCTAGGAAATTAATAATACAGACACAATACTTTATTCAGAAACCATAAATTGGCAAGGAAGCTTAAACTACCTGCATTTACGAACAGATACACATGAGATAGATATGAAAGATAGGGAGGGAGATAGGGA</canonical>
            <polymorphic>ACAGGTATCGTACCTTAGTGGTACCGTACCCTAGAGGTATCGTACTCTTGAGGTATCGTACTCTAGAGGTATCGTATCCTCGAGGTATCGTATCCTCGAGGTATCGTACTCTTGATGTACCGTACCATTAAGATACCGAACCCTCGAGGTACCGTATCCTTGAGATACCAAACATTTGAGGTACCGTCCTCAAAATGTATCGTATTCTTGAGATATCGTGCCCTTAAGATACCGTATCCTTAAGTGCAGGAATGAAGGAACAAAAATGAATAATATAACTGTAAGCCCCTCAAGAAGTTGAAATTGTGGGCTCACCGTTTGAGGTGCTGGGTTGTTACCAGCTGAGCTAAAATACATACCGTAATTGAATACTGTAACTCTGAAAAATTCCGAAAAAATCTAAAATTCCGAAAAAAAATCTCCTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGMAAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCCCTGCAAAATTACATTTATCATATTTCGACAAAATCCATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGTTTGTGCGATCTGTGCTAGAATTTAGTTTTTAAAGGCTTAAAATGAAAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTACGTTAGTGATCACCGATGTCTTATTGGACGATATCTTTGAAAGATGAGATTCCTGTGTCTTGAGAAAAATAACAAACAACATCTTTCTCTGATTTCTATCTTGACCATTGGTCCTCTAGGAAATTAATAATACAGACACAATACTTTATTCAGAAACCATAAATTGGCAAGGAAGCTTAAACTACCTGCATTTACGAACAGATACACATGAGATAGATATGAAAGATAGGGAGGGAGATAGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTCTCTCCTCCATTGAACTA</pcr_primer_p1>
		<pcr_primer_p2>ACTGATTTGATCTTTTGTAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCCCTGCAAAATTACATTTATCATATTTCGACAAAATCCATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGT</canonical_amplicon>
		<polymorphic_amplicon>CTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGMAAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCCCTGCAAAATTACATTTATCATATTTCGACAAAATCCATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29230</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>60337</contig_pos>
        <strand>+</strand>
        <context>GCTYAAAATG[C/T]AAATCCCCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCAGTTTGTGCGATCTGTGCTAGAATTTAGTTTTTAAAGGCTTAAAATG</left_flank>
        <right_flank>AAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTACGTTAGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGTGCCCTTAAGATACCGTATCCTTAAGTGCAGGAATGAAGGAACAAAAATGAATAATATAACTGTAAGCCCCTCAAGAAGTTGAAATTGTGGGCTCACCGTTTGAGGTGCTGGGTTGTTACCAGCTGAGCTAAAATACATACCGTAATTGAATACTGTAACTCTGAAAAATTCCGAAAAAATCTAAAATTCCGAAAAAAAATCTCCTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCCCTGCAAAATTACATTTATCATATTTCGACAAAATCCATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGTTTGTGCGATCTGTGCTAGAATTTAGTTTTTAAAGGCTTAAAATGAAAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTACGTTAGTGATCACCGATGTCTTATTGGACGATATCTTTGAAAGATGAGATTCCTGTGTCTTGAGAAAAATAACAAACAACATCTTTCTCTGATTTCTATCTTGACCATTGGTCCTCTAGGAAATTAATAATACAGACACAATACTTTATTCAGAAACCATAAATTGGCAAGGAAGCTTAAACTACCTGCATTTACGAACAGATACACATGAGATAGATATGAAAGATAGGGAGGGAGATAGGGATGATTTGAGATTTTTGAAGTGTGACAGAGGGGAATGCTTGAAAGGTAAAAAAGGCCCGTAAAATTGAAAGAGCTCAATTGAGGAAGATATTTCTGACGCATGGATCGAACGTCATCAGATGGAAGATGTCCGAGACGCGTGTATGATTGTAGATTGCTTTGACGGCGCAGCGAATCGAGCTGACCAAGAGGATGATCTCTCCGAAGCGTTCGGC</canonical>
            <polymorphic>ATCGTGCCCTTAAGATACCGTATCCTTAAGTGCAGGAATGAAGGAACAAAAATGAATAATATAACTGTAAGCCCCTCAAGAAGTTGAAATTGTGGGCTCACCGTTTGAGGTGCTGGGTTGTTACCAGCTGAGCTAAAATACATACCGTAATTGAATACTGTAACTCTGAAAAATTCCGAAAAAATCTAAAATTCCGAAAAAAAATCTCCTGTCTCTCCTCCATTGAACTACGGTAGACAACGTTTTCTTAAAATCGTTTATGGCGTCCCTTCATATTTTATTTGGAAAAAAAAAGTGAAAAACTTCAAATTCAAGAATCTTTCCCCTGCAAAATTACATTTATCATATTTCGACAAAATCCATCATCCCCCTCCAGCGCAGCATATCCCAAAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGTTTGTGCGATCTGTGCTAGAATTTAGTTTTTAAAGGCTTAAAATGYAAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTACGTTAGTGATCACCGATGTCTTATTGGACGATATCTTTGAAAGATGAGATTCCTGTGTCTTGAGAAAAATAACAAACAACATCTTTCTCTGATTTCTATCTTGACCATTGGTCCTCTAGGAAATTAATAATACAGACACAATACTTTATTCAGAAACCATAAATTGGCAAGGAAGCTTAAACTACCTGCATTTACGAACAGATACACATGAGATAGATATGAAAGATAGGGAGGGAGATAGGGATGATTTGAGATTTTTGAAGTGTGACAGAGGGGAATGCTTGAAAGGTAAAAAAGGCCCGTAAAATTGAAAGAGCTCAATTGAGGAAGATATTTCTGACGCATGGATCGAACGTCATCAGATGGAAGATGTCCGAGACGCGTGTATGATTGTAGATTGCTTTGACGGCGCAGCGAATCGAGCTGACCAAGAGGATGATCTCTCCGAAGCGTTCGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTACGTGCCATATGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>AAATCAGAGAAAGATGTTGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGTTTGTGCGATCTGTGCTAGAATTTAGTTTTTAAAGGCTTAAAATGAAAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTACGTTAGTGATCACCGATGTCTTATTGGACGATATCTTTGAAAGATGAGATTCCTGTGTCTTGAGAAAAATAACAAACAACATCTTTCTCTGATTT</canonical_amplicon>
		<polymorphic_amplicon>AAATTACGTGCCATATGAAAACCGATCATCTCTTTTCGTAGTCACCTACAAAAGATCAAATCAGTTTGTGCGATCTGTGCTAGAATTTAGTTTTTAAAGGCTTAAAATGYAAATCCCCTGTTTCAGTAAAAATCTGTCTCACATCCTTTTTACGTTAGTGATCACCGATGTCTTATTGGACGATATCTTTGAAAGATGAGATTCCTGTGTCTTGAGAAAAATAACAAACAACATCTTTCTCTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29231</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>63062</contig_pos>
        <strand>+</strand>
        <context>TTTCAATGAT[C/T]GCCAGATGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGAT</left_flank>
        <right_flank>GCCAGATGTTGTGTGGAATCAAAATAACAGTTTTCTTTTGAGAAGAAAAG</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATATTTTGATATCTTTCGAGAGAACCGAGATAATTGGGCTCAAATTGCACGTATCGAGTGGCTGTCACTTAGAGAAAATAAGGTATGTTCCACAGGGTCTATTTTTGAAGACTTATGTAGCTAGCTTCGACTTTTGATAGCAAAATTTCAATTTTTAAAAACATGGAAAAATAAAATTTACCTCCATTATCACTTTCACAACTCGACTGTGGTGGACTAGGCGAGAAGTTCAGCGCGACTTCAATCGACTGGCTCATATCGTCGGTGAGAATGGTTTTGGGCTTCCTGGGACCAAGAAGGTCTCGTCTTTGGATGGCTGGAAAGAATGGAATTAATGAGAGGGACCAAAAAAAAGGGAAGGACATCCCAAAAATGACGGGATTAGCAAATGAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGATCGCCAGATGTTGTGTGGAATCAAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTT</canonical>
            <polymorphic>TAATATTTTGATATCTTTCGAGAGAACCGAGATAATTGGGCTCAAATTGCACGTATCGAGTGGCTGTCACTTAGAGAAAATAAGGTATGTTCCACAGGGTCTATTTTTGAAGACTTATGTAGCTAGCTTCGACTTTTGATAGCAAAATTTCAATTTTTAAAAACATGGAAAAATAAAATTTACCTCCATTATCACTTTCACAACTCGACTGTGGTGGACTAGGCGAGAAGTTCAGCGCGACTTCAATCGACTGGCTCATATCGTCGGTGAGAATGGTTTTGGGCTTCCTGGGACCAAGAAGGTCTCGTCTTTGGATGGCTGGAAAGAATGGAATTAATGAGAGGGACCAAAAAAAAGGGAAGGACATCCCAAAAATGACGGGATTAGCAAATGAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGATYGCCAGATGTTGTGTGGAATCAAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>429 394 78 55 32 12</canonical_bands>
                <polymorphic_bands>429 394 90 55 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTAGCAAATGAGGTGACAATAC</pcr_primer_p1>
		<pcr_primer_p2>ATATACGGGAAAAATTTTGATCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTAGCAAATGAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGATCGCCAGATGTTGTGTGGAATCAAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATAT</canonical_amplicon>
		<polymorphic_amplicon>ATTAGCAAATGAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGATYGCCAGATGTTGTGTGGAATCAAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29232</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>63079</contig_pos>
        <strand>+</strand>
        <context>TGTTGTGTGG[A/G]ATCMAAATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCATATTTTGTTTCGATGATCTTTTCAATGATCGCCAGATGTTGTGTGG</left_flank>
        <right_flank>ATCAAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTC</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAGAGAACCGAGATAATTGGGCTCAAATTGCACGTATCGAGTGGCTGTCACTTAGAGAAAATAAGGTATGTTCCACAGGGTCTATTTTTGAAGACTTATGTAGCTAGCTTCGACTTTTGATAGCAAAATTTCAATTTTTAAAAACATGGAAAAATAAAATTTACCTCCATTATCACTTTCACAACTCGACTGTGGTGGACTAGGCGAGAAGTTCAGCGCGACTTCAATCGACTGGCTCATATCGTCGGTGAGAATGGTTTTGGGCTTCCTGGGACCAAGAAGGTCTCGTCTTTGGATGGCTGGAAAGAATGGAATTAATGAGAGGGACCAAAAAAAAGGGAAGGACATCCCAAAAATGACGGGATTAGCAAATGAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGATCGCCAGATGTTGTGTGGAATCAAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATC</canonical>
            <polymorphic>TCGAGAGAACCGAGATAATTGGGCTCAAATTGCACGTATCGAGTGGCTGTCACTTAGAGAAAATAAGGTATGTTCCACAGGGTCTATTTTTGAAGACTTATGTAGCTAGCTTCGACTTTTGATAGCAAAATTTCAATTTTTAAAAACATGGAAAAATAAAATTTACCTCCATTATCACTTTCACAACTCGACTGTGGTGGACTAGGCGAGAAGTTCAGCGCGACTTCAATCGACTGGCTCATATCGTCGGTGAGAATGGTTTTGGGCTTCCTGGGACCAAGAAGGTCTCGTCTTTGGATGGCTGGAAAGAATGGAATTAATGAGAGGGACCAAAAAAAAGGGAAGGACATCCCAAAAATGACGGGATTAGCAAATGAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGATCGCCAGATGTTGTGTGGRATCAAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>499 420 81</canonical_bands>
                <polymorphic_bands>580 420</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>499 420 81</canonical_bands>
                <polymorphic_bands>580 420</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTAGCAAATGAGGTGACAATAC</pcr_primer_p1>
		<pcr_primer_p2>ATATACGGGAAAAATTTTGATCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTAGCAAATGAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGATCGCCAGATGTTGTGTGGAATCAAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATAT</canonical_amplicon>
		<polymorphic_amplicon>ATTAGCAAATGAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGATCGCCAGATGTTGTGTGGRATCAAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29233</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>63096</contig_pos>
        <strand>+</strand>
        <context>ATAACAGTTT[C/T]CTTTTGAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGATCTTTTCAATGATCGCCAGATGTTGTGTGGAATCAAAATAACAGTTT</left_flank>
        <right_flank>CTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAG</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGGGCTCAAATTGCACGTATCGAGTGGCTGTCACTTAGAGAAAATAAGGTATGTTCCACAGGGTCTATTTTTGAAGACTTATGTAGCTAGCTTCGACTTTTGATAGCAAAATTTCAATTTTTAAAAACATGGAAAAATAAAATTTACCTCCATTATCACTTTCACAACTCGACTGTGGTGGACTAGGCGAGAAGTTCAGCGCGACTTCAATCGACTGGCTCATATCGTCGGTGAGAATGGTTTTGGGCTTCCTGGGACCAAGAAGGTCTCGTCTTTGGATGGCTGGAAAGAATGGAATTAATGAGAGGGACCAAAAAAAAGGGAAGGACATCCCAAAAATGACGGGATTAGCAAATGAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGATCGCCAGATGTTGTGTGGAATCAAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATCTCACATAGGAACCGAGA</canonical>
            <polymorphic>ATTGGGCTCAAATTGCACGTATCGAGTGGCTGTCACTTAGAGAAAATAAGGTATGTTCCACAGGGTCTATTTTTGAAGACTTATGTAGCTAGCTTCGACTTTTGATAGCAAAATTTCAATTTTTAAAAACATGGAAAAATAAAATTTACCTCCATTATCACTTTCACAACTCGACTGTGGTGGACTAGGCGAGAAGTTCAGCGCGACTTCAATCGACTGGCTCATATCGTCGGTGAGAATGGTTTTGGGCTTCCTGGGACCAAGAAGGTCTCGTCTTTGGATGGCTGGAAAGAATGGAATTAATGAGAGGGACCAAAAAAAAGGGAAGGACATCCCAAAAATGACGGGATTAGCAAATGAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGATCGCCAGATGTTGTGTGGAATCAAAATAACAGTTTYCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATCTCACATAGGAACCGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTAGCAAATGAGGTGACAATAC</pcr_primer_p1>
		<pcr_primer_p2>ATATACGGGAAAAATTTTGATCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTAGCAAATGAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGATCGCCAGATGTTGTGTGGAATCAAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATAT</canonical_amplicon>
		<polymorphic_amplicon>ATTAGCAAATGAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGATCGCCAGATGTTGTGTGGAATCAAAATAACAGTTTYCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29234</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>63293</contig_pos>
        <strand></strand>
        <context>aatttcttgt[G/A]aaaatccaam</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGT</left_flank>
        <right_flank>AAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGCGCGACTTCAATCGACTGGCTCATATCGTCGGTGAGAATGGTTTTGGGCTTCCTGGGACCAAGAAGGTCTCGTCTTTGGATGGCTGGAAAGAATGGAATTAATGAGAGGGACCAAAAAAAAGGGAAGGACATCCCAAAAATGACGGGATTAGCAAATGAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGATCGCCAGATGTTGTGTGGAATCAAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATCTCACATAGGAACCGAGATAATTGAGGTCAAAATTCATGTATAGGATGGGCTTCCATTCTTGAATATACGGTATCTTTAACTCCGAATTCGAAATATGACTTTTTCCGATACTGTATCCTTCTCTTTTCTTTTAGCCCCATTTTTTCTGAAATTTTTTTCTCCGTTCCTTCATAATCATGGGTCAAATCCCCACCCCTTTACAGTAATTTCTACG</canonical>
            <polymorphic>TCAGCGCGACTTCAATCGACTGGCTCATATCGTCGGTGAGAATGGTTTTGGGCTTCCTGGGACCAAGAAGGTCTCGTCTTTGGATGGCTGGAAAGAATGGAATTAATGAGAGGGACCAAAAAAAAGGGAAGGACATCCCAAAAATGACGGGATTAGCAAATGAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGATCGCCAGATGTTGTGTGGAATCAAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTRAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATCTCACATAGGAACCGAGATAATTGAGGTCAAAATTCATGTATAGGATGGGCTTCCATTCTTGAATATACGGTATCTTTAACTCCGAATTCGAAATATGACTTTTTCCGATACTGTATCCTTCTCTTTTCTTTTAGCCCCATTTTTTCTGAAATTTTTTTCTCCGTTCCTTCATAATCATGGGTCAAATCCCCACCCCTTTACAGTAATTTCTACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>216 189 131 129 114 83 38 38 22 20 9 6 3 2</canonical_bands>
                <polymorphic_bands>347 189 129 114 83 38 38 22 20 9 6 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCGTATATCATATTTGACTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCGAATTCGGAGTTAAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>490</pcr_amplicon_size>
		<canonical_amplicon>CCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATCTCACATAGGAACCGAGATAATTGAGGTCAAAATTCATGTATAGGATGGGCTTCCATTCTTGAATATACGGTATCTTTAACTCCGAATTCGAA</canonical_amplicon>
		<polymorphic_amplicon>CCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTRAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATCTCACATAGGAACCGAGATAATTGAGGTCAAAATTCATGTATAGGATGGGCTTCCATTCTTGAATATACGGTATCTTTAACTCCGAATTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29235</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>63303</contig_pos>
        <strand></strand>
        <context>raaaatccaa[C/A]aaaacgagat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAA</left_flank>
        <right_flank>AAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAATCGACTGGCTCATATCGTCGGTGAGAATGGTTTTGGGCTTCCTGGGACCAAGAAGGTCTCGTCTTTGGATGGCTGGAAAGAATGGAATTAATGAGAGGGACCAAAAAAAAGGGAAGGACATCCCAAAAATGACGGGATTAGCAAATGAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGATCGCCAGATGTTGTGTGGAATCAAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATCTCACATAGGAACCGAGATAATTGAGGTCAAAATTCATGTATAGGATGGGCTTCCATTCTTGAATATACGGTATCTTTAACTCCGAATTCGAAATATGACTTTTTCCGATACTGTATCCTTCTCTTTTCTTTTAGCCCCATTTTTTCTGAAATTTTTTTCTCCGTTCCTTCATAATCATGGGTCAAATCCCCACCCCTTTACAGTAATTTCTACGCGATTGGTTA</canonical>
            <polymorphic>TTCAATCGACTGGCTCATATCGTCGGTGAGAATGGTTTTGGGCTTCCTGGGACCAAGAAGGTCTCGTCTTTGGATGGCTGGAAAGAATGGAATTAATGAGAGGGACCAAAAAAAAGGGAAGGACATCCCAAAAATGACGGGATTAGCAAATGAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGATCGCCAGATGTTGTGTGGAATCAAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAAMAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATCTCACATAGGAACCGAGATAATTGAGGTCAAAATTCATGTATAGGATGGGCTTCCATTCTTGAATATACGGTATCTTTAACTCCGAATTCGAAATATGACTTTTTCCGATACTGTATCCTTCTCTTTTCTTTTAGCCCCATTTTTTCTGAAATTTTTTTCTCCGTTCCTTCATAATCATGGGTCAAATCCCCACCCCTTTACAGTAATTTCTACGCGATTGGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCGTATATCATATTTGACTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCGAATTCGGAGTTAAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>490</pcr_amplicon_size>
		<canonical_amplicon>CCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATCTCACATAGGAACCGAGATAATTGAGGTCAAAATTCATGTATAGGATGGGCTTCCATTCTTGAATATACGGTATCTTTAACTCCGAATTCGAA</canonical_amplicon>
		<polymorphic_amplicon>CCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAAMAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATCTCACATAGGAACCGAGATAATTGAGGTCAAAATTCATGTATAGGATGGGCTTCCATTCTTGAATATACGGTATCTTTAACTCCGAATTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29236</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>63319</contig_pos>
        <strand></strand>
        <context>gagataagcg[A/G]ttttcccaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCG</left_flank>
        <right_flank>TTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATCGTCGGTGAGAATGGTTTTGGGCTTCCTGGGACCAAGAAGGTCTCGTCTTTGGATGGCTGGAAAGAATGGAATTAATGAGAGGGACCAAAAAAAAGGGAAGGACATCCCAAAAATGACGGGATTAGCAAATGAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGATCGCCAGATGTTGTGTGGAATCAAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATCTCACATAGGAACCGAGATAATTGAGGTCAAAATTCATGTATAGGATGGGCTTCCATTCTTGAATATACGGTATCTTTAACTCCGAATTCGAAATATGACTTTTTCCGATACTGTATCCTTCTCTTTTCTTTTAGCCCCATTTTTTCTGAAATTTTTTTCTCCGTTCCTTCATAATCATGGGTCAAATCCCCACCCCTTTACAGTAATTTCTACGCGATTGGTTAGGAAATGGGTACAACA</canonical>
            <polymorphic>ATATCGTCGGTGAGAATGGTTTTGGGCTTCCTGGGACCAAGAAGGTCTCGTCTTTGGATGGCTGGAAAGAATGGAATTAATGAGAGGGACCAAAAAAAAGGGAAGGACATCCCAAAAATGACGGGATTAGCAAATGAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGATCGCCAGATGTTGTGTGGAATCAAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGRTTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATCTCACATAGGAACCGAGATAATTGAGGTCAAAATTCATGTATAGGATGGGCTTCCATTCTTGAATATACGGTATCTTTAACTCCGAATTCGAAATATGACTTTTTCCGATACTGTATCCTTCTCTTTTCTTTTAGCCCCATTTTTTCTGAAATTTTTTTCTCCGTTCCTTCATAATCATGGGTCAAATCCCCACCCCTTTACAGTAATTTCTACGCGATTGGTTAGGAAATGGGTACAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCGTATATCATATTTGACTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCGAATTCGGAGTTAAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>490</pcr_amplicon_size>
		<canonical_amplicon>CCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATCTCACATAGGAACCGAGATAATTGAGGTCAAAATTCATGTATAGGATGGGCTTCCATTCTTGAATATACGGTATCTTTAACTCCGAATTCGAA</canonical_amplicon>
		<polymorphic_amplicon>CCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGRTTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATCTCACATAGGAACCGAGATAATTGAGGTCAAAATTCATGTATAGGATGGGCTTCCATTCTTGAATATACGGTATCTTTAACTCCGAATTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29237</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>63384</contig_pos>
        <strand></strand>
        <context>ctttgaaaat[G/T]tcagccaagt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAAT</left_flank>
        <right_flank>TCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGAATGGAATTAATGAGAGGGACCAAAAAAAAGGGAAGGACATCCCAAAAATGACGGGATTAGCAAATGAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGATCGCCAGATGTTGTGTGGAATCAAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATCTCACATAGGAACCGAGATAATTGAGGTCAAAATTCATGTATAGGATGGGCTTCCATTCTTGAATATACGGTATCTTTAACTCCGAATTCGAAATATGACTTTTTCCGATACTGTATCCTTCTCTTTTCTTTTAGCCCCATTTTTTCTGAAATTTTTTTCTCCGTTCCTTCATAATCATGGGTCAAATCCCCACCCCTTTACAGTAATTTCTACGCGATTGGTTAGGAAATGGGTACAACAAATAAGGCAAAAGGGAAAGAAAACTGCGTAAAAAAGATTGAAAAGATTGCAGATAGAAAGGTTTT</canonical>
            <polymorphic>AAAGAATGGAATTAATGAGAGGGACCAAAAAAAAGGGAAGGACATCCCAAAAATGACGGGATTAGCAAATGAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGATCGCCAGATGTTGTGTGGAATCAAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATKTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATCTCACATAGGAACCGAGATAATTGAGGTCAAAATTCATGTATAGGATGGGCTTCCATTCTTGAATATACGGTATCTTTAACTCCGAATTCGAAATATGACTTTTTCCGATACTGTATCCTTCTCTTTTCTTTTAGCCCCATTTTTTCTGAAATTTTTTTCTCCGTTCCTTCATAATCATGGGTCAAATCCCCACCCCTTTACAGTAATTTCTACGCGATTGGTTAGGAAATGGGTACAACAAATAAGGCAAAAGGGAAAGAAAACTGCGTAAAAAAGATTGAAAAGATTGCAGATAGAAAGGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCGTATATCATATTTGACTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCGAATTCGGAGTTAAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>490</pcr_amplicon_size>
		<canonical_amplicon>CCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATCTCACATAGGAACCGAGATAATTGAGGTCAAAATTCATGTATAGGATGGGCTTCCATTCTTGAATATACGGTATCTTTAACTCCGAATTCGAA</canonical_amplicon>
		<polymorphic_amplicon>CCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATKTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATCTCACATAGGAACCGAGATAATTGAGGTCAAAATTCATGTATAGGATGGGCTTCCATTCTTGAATATACGGTATCTTTAACTCCGAATTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29238</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>63410</contig_pos>
        <strand></strand>
        <context>aattctatat[G/A]rctttttgat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATAT</left_flank>
        <right_flank>GCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAAAGGGAAGGACATCCCAAAAATGACGGGATTAGCAAATGAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGATCGCCAGATGTTGTGTGGAATCAAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATCTCACATAGGAACCGAGATAATTGAGGTCAAAATTCATGTATAGGATGGGCTTCCATTCTTGAATATACGGTATCTTTAACTCCGAATTCGAAATATGACTTTTTCCGATACTGTATCCTTCTCTTTTCTTTTAGCCCCATTTTTTCTGAAATTTTTTTCTCCGTTCCTTCATAATCATGGGTCAAATCCCCACCCCTTTACAGTAATTTCTACGCGATTGGTTAGGAAATGGGTACAACAAATAAGGCAAAAGGGAAAGAAAACTGCGTAAAAAAGATTGAAAAGATTGCAGATAGAAAGGTTTTGTATGGATTTTCATGCATGCAAATAC</canonical>
            <polymorphic>AAAAAAAAGGGAAGGACATCCCAAAAATGACGGGATTAGCAAATGAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGATCGCCAGATGTTGTGTGGAATCAAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATRGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATCTCACATAGGAACCGAGATAATTGAGGTCAAAATTCATGTATAGGATGGGCTTCCATTCTTGAATATACGGTATCTTTAACTCCGAATTCGAAATATGACTTTTTCCGATACTGTATCCTTCTCTTTTCTTTTAGCCCCATTTTTTCTGAAATTTTTTTCTCCGTTCCTTCATAATCATGGGTCAAATCCCCACCCCTTTACAGTAATTTCTACGCGATTGGTTAGGAAATGGGTACAACAAATAAGGCAAAAGGGAAAGAAAACTGCGTAAAAAAGATTGAAAAGATTGCAGATAGAAAGGTTTTGTATGGATTTTCATGCATGCAAATAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>353 197 153 90 85 64 35 23</canonical_bands>
                <polymorphic_bands>353 197 153 90 87 85 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCGTATATCATATTTGACTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCGAATTCGGAGTTAAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>490</pcr_amplicon_size>
		<canonical_amplicon>CCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATCTCACATAGGAACCGAGATAATTGAGGTCAAAATTCATGTATAGGATGGGCTTCCATTCTTGAATATACGGTATCTTTAACTCCGAATTCGAA</canonical_amplicon>
		<polymorphic_amplicon>CCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATRGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATCTCACATAGGAACCGAGATAATTGAGGTCAAAATTCATGTATAGGATGGGCTTCCATTCTTGAATATACGGTATCTTTAACTCCGAATTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29239</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>63411</contig_pos>
        <strand></strand>
        <context>attctatatr[G/A]ctttttgatg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATG</left_flank>
        <right_flank>CTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAAGGGAAGGACATCCCAAAAATGACGGGATTAGCAAATGAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGATCGCCAGATGTTGTGTGGAATCAAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATCTCACATAGGAACCGAGATAATTGAGGTCAAAATTCATGTATAGGATGGGCTTCCATTCTTGAATATACGGTATCTTTAACTCCGAATTCGAAATATGACTTTTTCCGATACTGTATCCTTCTCTTTTCTTTTAGCCCCATTTTTTCTGAAATTTTTTTCTCCGTTCCTTCATAATCATGGGTCAAATCCCCACCCCTTTACAGTAATTTCTACGCGATTGGTTAGGAAATGGGTACAACAAATAAGGCAAAAGGGAAAGAAAACTGCGTAAAAAAGATTGAAAAGATTGCAGATAGAAAGGTTTTGTATGGATTTTCATGCATGCAAATACG</canonical>
            <polymorphic>AAAAAAAGGGAAGGACATCCCAAAAATGACGGGATTAGCAAATGAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGATCGCCAGATGTTGTGTGGAATCAAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGRCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATCTCACATAGGAACCGAGATAATTGAGGTCAAAATTCATGTATAGGATGGGCTTCCATTCTTGAATATACGGTATCTTTAACTCCGAATTCGAAATATGACTTTTTCCGATACTGTATCCTTCTCTTTTCTTTTAGCCCCATTTTTTCTGAAATTTTTTTCTCCGTTCCTTCATAATCATGGGTCAAATCCCCACCCCTTTACAGTAATTTCTACGCGATTGGTTAGGAAATGGGTACAACAAATAAGGCAAAAGGGAAAGAAAACTGCGTAAAAAAGATTGAAAAGATTGCAGATAGAAAGGTTTTGTATGGATTTTCATGCATGCAAATACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>352 198 153 90 85 64 35 23</canonical_bands>
                <polymorphic_bands>352 198 153 90 87 85 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCGTATATCATATTTGACTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCGAATTCGGAGTTAAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>490</pcr_amplicon_size>
		<canonical_amplicon>CCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATCTCACATAGGAACCGAGATAATTGAGGTCAAAATTCATGTATAGGATGGGCTTCCATTCTTGAATATACGGTATCTTTAACTCCGAATTCGAA</canonical_amplicon>
		<polymorphic_amplicon>CCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGRCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATCTCACATAGGAACCGAGATAATTGAGGTCAAAATTCATGTATAGGATGGGCTTCCATTCTTGAATATACGGTATCTTTAACTCCGAATTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29240</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>63454</contig_pos>
        <strand>+</strand>
        <context>TTGCTCTAAT[A/G]GAAATCCACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAAT</left_flank>
        <right_flank>GAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGATCGCCAGATGTTGTGTGGAATCAAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATCTCACATAGGAACCGAGATAATTGAGGTCAAAATTCATGTATAGGATGGGCTTCCATTCTTGAATATACGGTATCTTTAACTCCGAATTCGAAATATGACTTTTTCCGATACTGTATCCTTCTCTTTTCTTTTAGCCCCATTTTTTCTGAAATTTTTTTCTCCGTTCCTTCATAATCATGGGTCAAATCCCCACCCCTTTACAGTAATTTCTACGCGATTGGTTAGGAAATGGGTACAACAAATAAGGCAAAAGGGAAAGAAAACTGCGTAAAAAAGATTGAAAAGATTGCAGATAGAAAGGTTTTGTATGGATTTTCATGCATGCAAATACGATTTTTAGGTTCAGTGTACGTGTATGTGTAATCGGTGTGTATG</canonical>
            <polymorphic>GAGGTGACAATACAAAGGAACAGGTGGTGGATTGAGTGATCGAAGGGGAAACAATACAATGTTTCGATGGTCCCTTCATATTTTGTTTCGATGATCTTTTCAATGATCGCCAGATGTTGTGTGGAATCAAAATAACAGTTTTCTTTTGAGAAGAAAAGGGATATTCAAAATTTTCCATTGTAGATCAAAAAGGTTTTTTTTCGAGAATCAAGTAGATCAAAATTTTTCCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATRGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATCTCACATAGGAACCGAGATAATTGAGGTCAAAATTCATGTATAGGATGGGCTTCCATTCTTGAATATACGGTATCTTTAACTCCGAATTCGAAATATGACTTTTTCCGATACTGTATCCTTCTCTTTTCTTTTAGCCCCATTTTTTCTGAAATTTTTTTCTCCGTTCCTTCATAATCATGGGTCAAATCCCCACCCCTTTACAGTAATTTCTACGCGATTGGTTAGGAAATGGGTACAACAAATAAGGCAAAAGGGAAAGAAAACTGCGTAAAAAAGATTGAAAAGATTGCAGATAGAAAGGTTTTGTATGGATTTTCATGCATGCAAATACGATTTTTAGGTTCAGTGTACGTGTATGTGTAATCGGTGTGTATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCGTATATCATATTTGACTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCGAATTCGGAGTTAAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>490</pcr_amplicon_size>
		<canonical_amplicon>CCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATAGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATCTCACATAGGAACCGAGATAATTGAGGTCAAAATTCATGTATAGGATGGGCTTCCATTCTTGAATATACGGTATCTTTAACTCCGAATTCGAA</canonical_amplicon>
		<polymorphic_amplicon>CCCGTATATCATATTTGACTTTTTCAGTTCAGAATTTTTCAATTTGTCTGAAAGTTTCAGATTATACAAAATAAAATTAGAGCTTCATTTTTGTAATTGTCAATTTCTTGTGAAAATCCAACAAAACGAGATAAGCGATTTTCCCAAAAAGTTGTCAATTACAAAAATGAAGCTTTAACTTTGTTTAGTATACTTTGAAAATGTCAGCCAAGTCTGAAAATTCTATATGGCTTTTTGATGACACCAAAGTTGACCATCGTATTTGCTCTAATRGAAATCCACGTACACTTTGAGCTCAATTTTCTCGGTTCCTGTAAAAGATATCAAAAAGCAGTAAACAAATAAATTATTTATCATGATATCATCAATCTTTTATCAGTTGACAGATTTTTGATATCTCACATAGGAACCGAGATAATTGAGGTCAAAATTCATGTATAGGATGGGCTTCCATTCTTGAATATACGGTATCTTTAACTCCGAATTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29241</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>65529</contig_pos>
        <strand>+</strand>
        <context>tttttgataa[A/T]mtttgaagra</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATTGGTGATATTATGATCAACAACTGATCAGTTAAAGAATTTTTGATAA</left_flank>
        <right_flank>TTTTGAAGAAACCGAGATATTTGACTTCGAAGTGCACGTATAGCGTGGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACATTATTGTTGCGCTTCTACGTCATCGCGTCCCCGAATCCTTCTTTGTCTATCTGCACTATGTTTATTCGATCTTTCTATTTGTAGGAAGAAGACGGACGGACGCTTATAAGAGTATATACAGTATACAAAATGATAAACGCCACTTGGTTTAATTGATCAACGTTCAAAGAAAGGCGGGAGAAGGGGGGGGGGGGGGCGGTACGTAGGATACGGTGGATGGGTGTTCAGGGTTTTGGAGGTTGGAAATTTCAAATTTTAAAAGAGATAGGTATCTAGGATAGGATTTAAACAAACCAACCGAGGAAAAAAATTATCAAATCTAATTTGAGCTACGAGATCGTCTTTAGATGATCCATTAACAAAGCAGCTTCAAAAGTTTAATCAATTTTAAGCTCAATTATCTCGATTCCTATGAGAGATATCAAACTTTTGTCAACTGGTAAAATATTGGTGATATTATGATCAACAACTGATCAGTTAAAGAATTTTTGATAACTTTTGAAGAAACCGAGATATTTGACTTCGAAGTGCACGTATAGCGTGGGCTTCTGTAAGAGCATTCACGGCAACTTGTATAGGATCTGTTATTAAGGACTAGTCTAACTAGGTTTTAGAAACACGATTACCACTTTTTTGATATTTTTCTGTGCCGAATATAACGCAGAGATCCTATTGATTTCTTAAAAATAGAATTCCAAAAATTAAAAGGAAATCGGATGAGAATCTACGGCGGGTACAGACGTACCGATGCAAGAAAACAAAGATTTGATTCGGAACACTGGGTCGTGGAGTTTGTGAGGGGTCACAAAAGAAAGTGAAGGTAACTGTTTAGAAAATGAGCTAATTATGGAATTTTGGGCGTTTAAGAGGAGCCTATAAACCAAATGCTACTTAATATCGCCTCCTAAAGGCATGCCCTTTTAATAGAGTTTCTCAAAATATTGGGAACTAAATTCAGAGGTTTGAGAAGATTTTTCGGGGTATTATACTATAAAT</canonical>
            <polymorphic>CACATTATTGTTGCGCTTCTACGTCATCGCGTCCCCGAATCCTTCTTTGTCTATCTGCACTATGTTTATTCGATCTTTCTATTTGTAGGAAGAAGACGGACGGACGCTTATAAGAGTATATACAGTATACAAAATGATAAACGCCACTTGGTTTAATTGATCAACGTTCAAAGAAAGGCGGGAGAAGGGGGGGGGGGGGGCGGTACGTAGGATACGGTGGATGGGTGTTCAGGGTTTTGGAGGTTGGAAATTTCAAATTTTAAAAGAGATAGGTATCTAGGATAGGATTTAAACAAACCAACCGAGGAAAAAAATTATCAAATCTAATTTGAGCTACGAGATCGTCTTTAGATGATCCATTAACAAAGCAGCTTCAAAAGTTTAATCAATTTTAAGCTCAATTATCTCGATTCCTATGAGAGATATCAAACTTTTGTCAACTGGTAAAATATTGGTGATATTATGATCAACAACTGATCAGTTAAAGAATTTTTGATAAWTTTTGAAGAAACCGAGATATTTGACTTCGAAGTGCACGTATAGCGTGGGCTTCTGTAAGAGCATTCACGGCAACTTGTATAGGATCTGTTATTAAGGACTAGTCTAACTAGGTTTTAGAAACACGATTACCACTTTTTTGATATTTTTCTGTGCCGAATATAACGCAGAGATCCTATTGATTTCTTAAAAATAGAATTCCAAAAATTAAAAGGAAATCGGATGAGAATCTACGGCGGGTACAGACGTACCGATGCAAGAAAACAAAGATTTGATTCGGAACACTGGGTCGTGGAGTTTGTGAGGGGTCACAAAAGAAAGTGAAGGTAACTGTTTAGAAAATGAGCTAATTATGGAATTTTGGGCGTTTAAGAGGAGCCTATAAACCAAATGCTACTTAATATCGCCTCCTAAAGGCATGCCCTTTTAATAGAGTTTCTCAAAATATTGGGAACTAAATTCAGAGGTTTGAGAAGATTTTTCGGGGTATTATACTATAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAGCAGCTTCAAAAGTTTA</pcr_primer_p1>
		<pcr_primer_p2>TCGTGTTTCTAAAACCTAGTTAGAC</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>CAAAGCAGCTTCAAAAGTTTAATCAATTTTAAGCTCAATTATCTCGATTCCTATGAGAGATATCAAACTTTTGTCAACTGGTAAAATATTGGTGATATTATGATCAACAACTGATCAGTTAAAGAATTTTTGATAACTTTTGAAGAAACCGAGATATTTGACTTCGAAGTGCACGTATAGCGTGGGCTTCTGTAAGAGCATTCACGGCAACTTGTATAGGATCTGTTATTAAGGACTAGTCTAACTAGGTTTTAGAAACACGA</canonical_amplicon>
		<polymorphic_amplicon>CAAAGCAGCTTCAAAAGTTTAATCAATTTTAAGCTCAATTATCTCGATTCCTATGAGAGATATCAAACTTTTGTCAACTGGTAAAATATTGGTGATATTATGATCAACAACTGATCAGTTAAAGAATTTTTGATAAWTTTTGAAGAAACCGAGATATTTGACTTCGAAGTGCACGTATAGCGTGGGCTTCTGTAAGAGCATTCACGGCAACTTGTATAGGATCTGTTATTAAGGACTAGTCTAACTAGGTTTTAGAAACACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29242</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>65530</contig_pos>
        <strand>+</strand>
        <context>ttttgataaw[A/C]tttgaagraa</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTGGTGATATTATGATCAACAACTGATCAGTTAAAGAATTTTTGATAAC</left_flank>
        <right_flank>TTTGAAGAAACCGAGATATTTGACTTCGAAGTGCACGTATAGCGTGGGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATTATTGTTGCGCTTCTACGTCATCGCGTCCCCGAATCCTTCTTTGTCTATCTGCACTATGTTTATTCGATCTTTCTATTTGTAGGAAGAAGACGGACGGACGCTTATAAGAGTATATACAGTATACAAAATGATAAACGCCACTTGGTTTAATTGATCAACGTTCAAAGAAAGGCGGGAGAAGGGGGGGGGGGGGGCGGTACGTAGGATACGGTGGATGGGTGTTCAGGGTTTTGGAGGTTGGAAATTTCAAATTTTAAAAGAGATAGGTATCTAGGATAGGATTTAAACAAACCAACCGAGGAAAAAAATTATCAAATCTAATTTGAGCTACGAGATCGTCTTTAGATGATCCATTAACAAAGCAGCTTCAAAAGTTTAATCAATTTTAAGCTCAATTATCTCGATTCCTATGAGAGATATCAAACTTTTGTCAACTGGTAAAATATTGGTGATATTATGATCAACAACTGATCAGTTAAAGAATTTTTGATAACTTTTGAAGAAACCGAGATATTTGACTTCGAAGTGCACGTATAGCGTGGGCTTCTGTAAGAGCATTCACGGCAACTTGTATAGGATCTGTTATTAAGGACTAGTCTAACTAGGTTTTAGAAACACGATTACCACTTTTTTGATATTTTTCTGTGCCGAATATAACGCAGAGATCCTATTGATTTCTTAAAAATAGAATTCCAAAAATTAAAAGGAAATCGGATGAGAATCTACGGCGGGTACAGACGTACCGATGCAAGAAAACAAAGATTTGATTCGGAACACTGGGTCGTGGAGTTTGTGAGGGGTCACAAAAGAAAGTGAAGGTAACTGTTTAGAAAATGAGCTAATTATGGAATTTTGGGCGTTTAAGAGGAGCCTATAAACCAAATGCTACTTAATATCGCCTCCTAAAGGCATGCCCTTTTAATAGAGTTTCTCAAAATATTGGGAACTAAATTCAGAGGTTTGAGAAGATTTTTCGGGGTATTATACTATAAATT</canonical>
            <polymorphic>ACATTATTGTTGCGCTTCTACGTCATCGCGTCCCCGAATCCTTCTTTGTCTATCTGCACTATGTTTATTCGATCTTTCTATTTGTAGGAAGAAGACGGACGGACGCTTATAAGAGTATATACAGTATACAAAATGATAAACGCCACTTGGTTTAATTGATCAACGTTCAAAGAAAGGCGGGAGAAGGGGGGGGGGGGGGCGGTACGTAGGATACGGTGGATGGGTGTTCAGGGTTTTGGAGGTTGGAAATTTCAAATTTTAAAAGAGATAGGTATCTAGGATAGGATTTAAACAAACCAACCGAGGAAAAAAATTATCAAATCTAATTTGAGCTACGAGATCGTCTTTAGATGATCCATTAACAAAGCAGCTTCAAAAGTTTAATCAATTTTAAGCTCAATTATCTCGATTCCTATGAGAGATATCAAACTTTTGTCAACTGGTAAAATATTGGTGATATTATGATCAACAACTGATCAGTTAAAGAATTTTTGATAACMTTTGAAGAAACCGAGATATTTGACTTCGAAGTGCACGTATAGCGTGGGCTTCTGTAAGAGCATTCACGGCAACTTGTATAGGATCTGTTATTAAGGACTAGTCTAACTAGGTTTTAGAAACACGATTACCACTTTTTTGATATTTTTCTGTGCCGAATATAACGCAGAGATCCTATTGATTTCTTAAAAATAGAATTCCAAAAATTAAAAGGAAATCGGATGAGAATCTACGGCGGGTACAGACGTACCGATGCAAGAAAACAAAGATTTGATTCGGAACACTGGGTCGTGGAGTTTGTGAGGGGTCACAAAAGAAAGTGAAGGTAACTGTTTAGAAAATGAGCTAATTATGGAATTTTGGGCGTTTAAGAGGAGCCTATAAACCAAATGCTACTTAATATCGCCTCCTAAAGGCATGCCCTTTTAATAGAGTTTCTCAAAATATTGGGAACTAAATTCAGAGGTTTGAGAAGATTTTTCGGGGTATTATACTATAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAGCAGCTTCAAAAGTTTA</pcr_primer_p1>
		<pcr_primer_p2>TCGTGTTTCTAAAACCTAGTTAGAC</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>CAAAGCAGCTTCAAAAGTTTAATCAATTTTAAGCTCAATTATCTCGATTCCTATGAGAGATATCAAACTTTTGTCAACTGGTAAAATATTGGTGATATTATGATCAACAACTGATCAGTTAAAGAATTTTTGATAACTTTTGAAGAAACCGAGATATTTGACTTCGAAGTGCACGTATAGCGTGGGCTTCTGTAAGAGCATTCACGGCAACTTGTATAGGATCTGTTATTAAGGACTAGTCTAACTAGGTTTTAGAAACACGA</canonical_amplicon>
		<polymorphic_amplicon>CAAAGCAGCTTCAAAAGTTTAATCAATTTTAAGCTCAATTATCTCGATTCCTATGAGAGATATCAAACTTTTGTCAACTGGTAAAATATTGGTGATATTATGATCAACAACTGATCAGTTAAAGAATTTTTGATAACMTTTGAAGAAACCGAGATATTTGACTTCGAAGTGCACGTATAGCGTGGGCTTCTGTAAGAGCATTCACGGCAACTTGTATAGGATCTGTTATTAAGGACTAGTCTAACTAGGTTTTAGAAACACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29243</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>65538</contig_pos>
        <strand>+</strand>
        <context>awmtttgaag[A/G]aaccgagata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTATGATCAACAACTGATCAGTTAAAGAATTTTTGATAACTTTTGAAG</left_flank>
        <right_flank>AACCGAGATATTTGACTTCGAAGTGCACGTATAGCGTGGGCTTCTGTAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGCGCTTCTACGTCATCGCGTCCCCGAATCCTTCTTTGTCTATCTGCACTATGTTTATTCGATCTTTCTATTTGTAGGAAGAAGACGGACGGACGCTTATAAGAGTATATACAGTATACAAAATGATAAACGCCACTTGGTTTAATTGATCAACGTTCAAAGAAAGGCGGGAGAAGGGGGGGGGGGGGGCGGTACGTAGGATACGGTGGATGGGTGTTCAGGGTTTTGGAGGTTGGAAATTTCAAATTTTAAAAGAGATAGGTATCTAGGATAGGATTTAAACAAACCAACCGAGGAAAAAAATTATCAAATCTAATTTGAGCTACGAGATCGTCTTTAGATGATCCATTAACAAAGCAGCTTCAAAAGTTTAATCAATTTTAAGCTCAATTATCTCGATTCCTATGAGAGATATCAAACTTTTGTCAACTGGTAAAATATTGGTGATATTATGATCAACAACTGATCAGTTAAAGAATTTTTGATAACTTTTGAAGAAACCGAGATATTTGACTTCGAAGTGCACGTATAGCGTGGGCTTCTGTAAGAGCATTCACGGCAACTTGTATAGGATCTGTTATTAAGGACTAGTCTAACTAGGTTTTAGAAACACGATTACCACTTTTTTGATATTTTTCTGTGCCGAATATAACGCAGAGATCCTATTGATTTCTTAAAAATAGAATTCCAAAAATTAAAAGGAAATCGGATGAGAATCTACGGCGGGTACAGACGTACCGATGCAAGAAAACAAAGATTTGATTCGGAACACTGGGTCGTGGAGTTTGTGAGGGGTCACAAAAGAAAGTGAAGGTAACTGTTTAGAAAATGAGCTAATTATGGAATTTTGGGCGTTTAAGAGGAGCCTATAAACCAAATGCTACTTAATATCGCCTCCTAAAGGCATGCCCTTTTAATAGAGTTTCTCAAAATATTGGGAACTAAATTCAGAGGTTTGAGAAGATTTTTCGGGGTATTATACTATAAATTCTGGGATA</canonical>
            <polymorphic>GTTGCGCTTCTACGTCATCGCGTCCCCGAATCCTTCTTTGTCTATCTGCACTATGTTTATTCGATCTTTCTATTTGTAGGAAGAAGACGGACGGACGCTTATAAGAGTATATACAGTATACAAAATGATAAACGCCACTTGGTTTAATTGATCAACGTTCAAAGAAAGGCGGGAGAAGGGGGGGGGGGGGGCGGTACGTAGGATACGGTGGATGGGTGTTCAGGGTTTTGGAGGTTGGAAATTTCAAATTTTAAAAGAGATAGGTATCTAGGATAGGATTTAAACAAACCAACCGAGGAAAAAAATTATCAAATCTAATTTGAGCTACGAGATCGTCTTTAGATGATCCATTAACAAAGCAGCTTCAAAAGTTTAATCAATTTTAAGCTCAATTATCTCGATTCCTATGAGAGATATCAAACTTTTGTCAACTGGTAAAATATTGGTGATATTATGATCAACAACTGATCAGTTAAAGAATTTTTGATAACTTTTGAAGRAACCGAGATATTTGACTTCGAAGTGCACGTATAGCGTGGGCTTCTGTAAGAGCATTCACGGCAACTTGTATAGGATCTGTTATTAAGGACTAGTCTAACTAGGTTTTAGAAACACGATTACCACTTTTTTGATATTTTTCTGTGCCGAATATAACGCAGAGATCCTATTGATTTCTTAAAAATAGAATTCCAAAAATTAAAAGGAAATCGGATGAGAATCTACGGCGGGTACAGACGTACCGATGCAAGAAAACAAAGATTTGATTCGGAACACTGGGTCGTGGAGTTTGTGAGGGGTCACAAAAGAAAGTGAAGGTAACTGTTTAGAAAATGAGCTAATTATGGAATTTTGGGCGTTTAAGAGGAGCCTATAAACCAAATGCTACTTAATATCGCCTCCTAAAGGCATGCCCTTTTAATAGAGTTTCTCAAAATATTGGGAACTAAATTCAGAGGTTTGAGAAGATTTTTCGGGGTATTATACTATAAATTCTGGGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAGCAGCTTCAAAAGTTTA</pcr_primer_p1>
		<pcr_primer_p2>TCGTGTTTCTAAAACCTAGTTAGAC</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>CAAAGCAGCTTCAAAAGTTTAATCAATTTTAAGCTCAATTATCTCGATTCCTATGAGAGATATCAAACTTTTGTCAACTGGTAAAATATTGGTGATATTATGATCAACAACTGATCAGTTAAAGAATTTTTGATAACTTTTGAAGAAACCGAGATATTTGACTTCGAAGTGCACGTATAGCGTGGGCTTCTGTAAGAGCATTCACGGCAACTTGTATAGGATCTGTTATTAAGGACTAGTCTAACTAGGTTTTAGAAACACGA</canonical_amplicon>
		<polymorphic_amplicon>CAAAGCAGCTTCAAAAGTTTAATCAATTTTAAGCTCAATTATCTCGATTCCTATGAGAGATATCAAACTTTTGTCAACTGGTAAAATATTGGTGATATTATGATCAACAACTGATCAGTTAAAGAATTTTTGATAACTTTTGAAGRAACCGAGATATTTGACTTCGAAGTGCACGTATAGCGTGGGCTTCTGTAAGAGCATTCACGGCAACTTGTATAGGATCTGTTATTAAGGACTAGTCTAACTAGGTTTTAGAAACACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29244</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>65550</contig_pos>
        <strand>+</strand>
        <context>accgagatat[A/T]tgacttcgaa</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAACTGATCAGTTAAAGAATTTTTGATAACTTTTGAAGAAACCGAGATAT</left_flank>
        <right_flank>TGACTTCGAAGTGCACGTATAGCGTGGGCTTCTGTAAGAGCATTCACGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTCATCGCGTCCCCGAATCCTTCTTTGTCTATCTGCACTATGTTTATTCGATCTTTCTATTTGTAGGAAGAAGACGGACGGACGCTTATAAGAGTATATACAGTATACAAAATGATAAACGCCACTTGGTTTAATTGATCAACGTTCAAAGAAAGGCGGGAGAAGGGGGGGGGGGGGGCGGTACGTAGGATACGGTGGATGGGTGTTCAGGGTTTTGGAGGTTGGAAATTTCAAATTTTAAAAGAGATAGGTATCTAGGATAGGATTTAAACAAACCAACCGAGGAAAAAAATTATCAAATCTAATTTGAGCTACGAGATCGTCTTTAGATGATCCATTAACAAAGCAGCTTCAAAAGTTTAATCAATTTTAAGCTCAATTATCTCGATTCCTATGAGAGATATCAAACTTTTGTCAACTGGTAAAATATTGGTGATATTATGATCAACAACTGATCAGTTAAAGAATTTTTGATAACTTTTGAAGAAACCGAGATATTTGACTTCGAAGTGCACGTATAGCGTGGGCTTCTGTAAGAGCATTCACGGCAACTTGTATAGGATCTGTTATTAAGGACTAGTCTAACTAGGTTTTAGAAACACGATTACCACTTTTTTGATATTTTTCTGTGCCGAATATAACGCAGAGATCCTATTGATTTCTTAAAAATAGAATTCCAAAAATTAAAAGGAAATCGGATGAGAATCTACGGCGGGTACAGACGTACCGATGCAAGAAAACAAAGATTTGATTCGGAACACTGGGTCGTGGAGTTTGTGAGGGGTCACAAAAGAAAGTGAAGGTAACTGTTTAGAAAATGAGCTAATTATGGAATTTTGGGCGTTTAAGAGGAGCCTATAAACCAAATGCTACTTAATATCGCCTCCTAAAGGCATGCCCTTTTAATAGAGTTTCTCAAAATATTGGGAACTAAATTCAGAGGTTTGAGAAGATTTTTCGGGGTATTATACTATAAATTCTGGGATATGTTAGCACATC</canonical>
            <polymorphic>CGTCATCGCGTCCCCGAATCCTTCTTTGTCTATCTGCACTATGTTTATTCGATCTTTCTATTTGTAGGAAGAAGACGGACGGACGCTTATAAGAGTATATACAGTATACAAAATGATAAACGCCACTTGGTTTAATTGATCAACGTTCAAAGAAAGGCGGGAGAAGGGGGGGGGGGGGGCGGTACGTAGGATACGGTGGATGGGTGTTCAGGGTTTTGGAGGTTGGAAATTTCAAATTTTAAAAGAGATAGGTATCTAGGATAGGATTTAAACAAACCAACCGAGGAAAAAAATTATCAAATCTAATTTGAGCTACGAGATCGTCTTTAGATGATCCATTAACAAAGCAGCTTCAAAAGTTTAATCAATTTTAAGCTCAATTATCTCGATTCCTATGAGAGATATCAAACTTTTGTCAACTGGTAAAATATTGGTGATATTATGATCAACAACTGATCAGTTAAAGAATTTTTGATAACTTTTGAAGAAACCGAGATATWTGACTTCGAAGTGCACGTATAGCGTGGGCTTCTGTAAGAGCATTCACGGCAACTTGTATAGGATCTGTTATTAAGGACTAGTCTAACTAGGTTTTAGAAACACGATTACCACTTTTTTGATATTTTTCTGTGCCGAATATAACGCAGAGATCCTATTGATTTCTTAAAAATAGAATTCCAAAAATTAAAAGGAAATCGGATGAGAATCTACGGCGGGTACAGACGTACCGATGCAAGAAAACAAAGATTTGATTCGGAACACTGGGTCGTGGAGTTTGTGAGGGGTCACAAAAGAAAGTGAAGGTAACTGTTTAGAAAATGAGCTAATTATGGAATTTTGGGCGTTTAAGAGGAGCCTATAAACCAAATGCTACTTAATATCGCCTCCTAAAGGCATGCCCTTTTAATAGAGTTTCTCAAAATATTGGGAACTAAATTCAGAGGTTTGAGAAGATTTTTCGGGGTATTATACTATAAATTCTGGGATATGTTAGCACATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAGCAGCTTCAAAAGTTTA</pcr_primer_p1>
		<pcr_primer_p2>TCGTGTTTCTAAAACCTAGTTAGAC</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>CAAAGCAGCTTCAAAAGTTTAATCAATTTTAAGCTCAATTATCTCGATTCCTATGAGAGATATCAAACTTTTGTCAACTGGTAAAATATTGGTGATATTATGATCAACAACTGATCAGTTAAAGAATTTTTGATAACTTTTGAAGAAACCGAGATATTTGACTTCGAAGTGCACGTATAGCGTGGGCTTCTGTAAGAGCATTCACGGCAACTTGTATAGGATCTGTTATTAAGGACTAGTCTAACTAGGTTTTAGAAACACGA</canonical_amplicon>
		<polymorphic_amplicon>CAAAGCAGCTTCAAAAGTTTAATCAATTTTAAGCTCAATTATCTCGATTCCTATGAGAGATATCAAACTTTTGTCAACTGGTAAAATATTGGTGATATTATGATCAACAACTGATCAGTTAAAGAATTTTTGATAACTTTTGAAGAAACCGAGATATWTGACTTCGAAGTGCACGTATAGCGTGGGCTTCTGTAAGAGCATTCACGGCAACTTGTATAGGATCTGTTATTAAGGACTAGTCTAACTAGGTTTTAGAAACACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29245</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>66740</contig_pos>
        <strand>+</strand>
        <context>AAACAAGGAG[A/G]TGAAACCAGR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAG</left_flank>
        <right_flank>TGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAAC</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTCACAAGACCATTCAACTTTTTTTGGATCTGGTTTGATAGGATTCAGCGAAAAAGTTGTTTTTTTGTTTTGGAAAAAAAATAATTCATTTAGCAAGAACTACAGTAAGACAATCAGCTGATCTATTTCCAGAGATCAGAAAAGGAAGAATTGAAAAAAAATTGCTCATATGCCAGTCACAAAAACTACAAGCTTCCCAAGAGAGAGAGAGAGAGAGAGAGAGAAAACATGTGCGATTTTTGAAGGTTGTTGCGCTTCTCTAAATCTGGCTTCTTTCAAAATAACATTCTAGCAGAAAAAAGCGTTTGATCAAAAAAAGAAGGAGAAGAAGAGGGTACAAAGATTATGAAGAGGGTGGGGGCTAGTCGAGTGAGCAAAAATGGAAAAGAAGAGAGCAAAAACGGATCAAACGGATATTCTTGTGTCTATAGTTTAGAAAAAGATTGGATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGAACAATTAGTTACAGTACACAGCTACGTCAAAATGCACCAAAACCTCTATACCTTCAGATGAAAAGCCTTGAAAGAAAATAATGACCAATTCAATTAGTCAGAGTCAAAAATAACATATGTCAAAGGTGGACCGAAAAATCAGCAC</canonical>
            <polymorphic>AAAGTCACAAGACCATTCAACTTTTTTTGGATCTGGTTTGATAGGATTCAGCGAAAAAGTTGTTTTTTTGTTTTGGAAAAAAAATAATTCATTTAGCAAGAACTACAGTAAGACAATCAGCTGATCTATTTCCAGAGATCAGAAAAGGAAGAATTGAAAAAAAATTGCTCATATGCCAGTCACAAAAACTACAAGCTTCCCAAGAGAGAGAGAGAGAGAGAGAGAGAAAACATGTGCGATTTTTGAAGGTTGTTGCGCTTCTCTAAATCTGGCTTCTTTCAAAATAACATTCTAGCAGAAAAAAGCGTTTGATCAAAAAAAGAAGGAGAAGAAGAGGGTACAAAGATTATGAAGAGGGTGGGGGCTAGTCGAGTGAGCAAAAATGGAAAAGAAGAGAGCAAAAACGGATCAAACGGATATTCTTGTGTCTATAGTTTAGAAAAAGATTGGATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGRTGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGAACAATTAGTTACAGTACACAGCTACGTCAAAATGCACCAAAACCTCTATACCTTCAGATGAAAAGCCTTGAAAGAAAATAATGACCAATTCAATTAGTCAGAGTCAAAAATAACATATGTCAAAGGTGGACCGAAAAATCAGCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATCACATTTTTCACGTATTC</pcr_primer_p1>
		<pcr_primer_p2>ACCTATTTGTATGACTATCGTAACC</pcr_primer_p2>
		<pcr_amplicon_size>398</pcr_amplicon_size>
		<canonical_amplicon>GGATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGT</canonical_amplicon>
		<polymorphic_amplicon>GGATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGRTGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29246</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>66815</contig_pos>
        <strand>+</strand>
        <context>ACCAATTGTT[A/C]TCTAATAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTT</left_flank>
        <right_flank>TCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAAAAATAATTCATTTAGCAAGAACTACAGTAAGACAATCAGCTGATCTATTTCCAGAGATCAGAAAAGGAAGAATTGAAAAAAAATTGCTCATATGCCAGTCACAAAAACTACAAGCTTCCCAAGAGAGAGAGAGAGAGAGAGAGAGAAAACATGTGCGATTTTTGAAGGTTGTTGCGCTTCTCTAAATCTGGCTTCTTTCAAAATAACATTCTAGCAGAAAAAAGCGTTTGATCAAAAAAAGAAGGAGAAGAAGAGGGTACAAAGATTATGAAGAGGGTGGGGGCTAGTCGAGTGAGCAAAAATGGAAAAGAAGAGAGCAAAAACGGATCAAACGGATATTCTTGTGTCTATAGTTTAGAAAAAGATTGGATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGAACAATTAGTTACAGTACACAGCTACGTCAAAATGCACCAAAACCTCTATACCTTCAGATGAAAAGCCTTGAAAGAAAATAATGACCAATTCAATTAGTCAGAGTCAAAAATAACATATGTCAAAGGTGGACCGAAAAATCAGCACCCGTAAAACCTGTATTAGAAAGGCTGGCCTTGTTTGAAAATTCCTCCAGGGGCCCTTCAATTAGAGGAGGCCCTG</canonical>
            <polymorphic>GAAAAAAAATAATTCATTTAGCAAGAACTACAGTAAGACAATCAGCTGATCTATTTCCAGAGATCAGAAAAGGAAGAATTGAAAAAAAATTGCTCATATGCCAGTCACAAAAACTACAAGCTTCCCAAGAGAGAGAGAGAGAGAGAGAGAGAAAACATGTGCGATTTTTGAAGGTTGTTGCGCTTCTCTAAATCTGGCTTCTTTCAAAATAACATTCTAGCAGAAAAAAGCGTTTGATCAAAAAAAGAAGGAGAAGAAGAGGGTACAAAGATTATGAAGAGGGTGGGGGCTAGTCGAGTGAGCAAAAATGGAAAAGAAGAGAGCAAAAACGGATCAAACGGATATTCTTGTGTCTATAGTTTAGAAAAAGATTGGATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTMTCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGAACAATTAGTTACAGTACACAGCTACGTCAAAATGCACCAAAACCTCTATACCTTCAGATGAAAAGCCTTGAAAGAAAATAATGACCAATTCAATTAGTCAGAGTCAAAAATAACATATGTCAAAGGTGGACCGAAAAATCAGCACCCGTAAAACCTGTATTAGAAAGGCTGGCCTTGTTTGAAAATTCCTCCAGGGGCCCTTCAATTAGAGGAGGCCCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAGGATTTTTCAGATTTC</pcr_primer_p1>
		<pcr_primer_p2>ACCTATTTGTATGACTATCGTAACC</pcr_primer_p2>
		<pcr_amplicon_size>332</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTMTCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29247</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>66838</contig_pos>
        <strand>+</strand>
        <context>ARWTACATGC[A/T]cmttgagctc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGC</left_flank>
        <right_flank>CATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAACTACAGTAAGACAATCAGCTGATCTATTTCCAGAGATCAGAAAAGGAAGAATTGAAAAAAAATTGCTCATATGCCAGTCACAAAAACTACAAGCTTCCCAAGAGAGAGAGAGAGAGAGAGAGAGAAAACATGTGCGATTTTTGAAGGTTGTTGCGCTTCTCTAAATCTGGCTTCTTTCAAAATAACATTCTAGCAGAAAAAAGCGTTTGATCAAAAAAAGAAGGAGAAGAAGAGGGTACAAAGATTATGAAGAGGGTGGGGGCTAGTCGAGTGAGCAAAAATGGAAAAGAAGAGAGCAAAAACGGATCAAACGGATATTCTTGTGTCTATAGTTTAGAAAAAGATTGGATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGAACAATTAGTTACAGTACACAGCTACGTCAAAATGCACCAAAACCTCTATACCTTCAGATGAAAAGCCTTGAAAGAAAATAATGACCAATTCAATTAGTCAGAGTCAAAAATAACATATGTCAAAGGTGGACCGAAAAATCAGCACCCGTAAAACCTGTATTAGAAAGGCTGGCCTTGTTTGAAAATTCCTCCAGGGGCCCTTCAATTAGAGGAGGCCCTGATATTATTCTTGTCATTTTCTGA</canonical>
            <polymorphic>AGAACTACAGTAAGACAATCAGCTGATCTATTTCCAGAGATCAGAAAAGGAAGAATTGAAAAAAAATTGCTCATATGCCAGTCACAAAAACTACAAGCTTCCCAAGAGAGAGAGAGAGAGAGAGAGAGAAAACATGTGCGATTTTTGAAGGTTGTTGCGCTTCTCTAAATCTGGCTTCTTTCAAAATAACATTCTAGCAGAAAAAAGCGTTTGATCAAAAAAAGAAGGAGAAGAAGAGGGTACAAAGATTATGAAGAGGGTGGGGGCTAGTCGAGTGAGCAAAAATGGAAAAGAAGAGAGCAAAAACGGATCAAACGGATATTCTTGTGTCTATAGTTTAGAAAAAGATTGGATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCWCATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGAACAATTAGTTACAGTACACAGCTACGTCAAAATGCACCAAAACCTCTATACCTTCAGATGAAAAGCCTTGAAAGAAAATAATGACCAATTCAATTAGTCAGAGTCAAAAATAACATATGTCAAAGGTGGACCGAAAAATCAGCACCCGTAAAACCTGTATTAGAAAGGCTGGCCTTGTTTGAAAATTCCTCCAGGGGCCCTTCAATTAGAGGAGGCCCTGATATTATTCTTGTCATTTTCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>498 293 209</canonical_bands>
                <polymorphic_bands>791 209</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>135 124 119 99 92 84 61 55 54 52 27 26 18 16 15 14 9</canonical_bands>
                <polymorphic_bands>190 124 119 99 92 84 61 54 52 27 26 18 16 15 14 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGATTTCGAAGTTCAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCAAATCTCACCTATTTGTATGAC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>CAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGA</canonical_amplicon>
		<polymorphic_amplicon>CAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCWCATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29248</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>66840</contig_pos>
        <strand>+</strand>
        <context>WTACATGCwc[A/C]ttgagctcaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCAC</left_flank>
        <right_flank>TTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTACAGTAAGACAATCAGCTGATCTATTTCCAGAGATCAGAAAAGGAAGAATTGAAAAAAAATTGCTCATATGCCAGTCACAAAAACTACAAGCTTCCCAAGAGAGAGAGAGAGAGAGAGAGAGAAAACATGTGCGATTTTTGAAGGTTGTTGCGCTTCTCTAAATCTGGCTTCTTTCAAAATAACATTCTAGCAGAAAAAAGCGTTTGATCAAAAAAAGAAGGAGAAGAAGAGGGTACAAAGATTATGAAGAGGGTGGGGGCTAGTCGAGTGAGCAAAAATGGAAAAGAAGAGAGCAAAAACGGATCAAACGGATATTCTTGTGTCTATAGTTTAGAAAAAGATTGGATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGAACAATTAGTTACAGTACACAGCTACGTCAAAATGCACCAAAACCTCTATACCTTCAGATGAAAAGCCTTGAAAGAAAATAATGACCAATTCAATTAGTCAGAGTCAAAAATAACATATGTCAAAGGTGGACCGAAAAATCAGCACCCGTAAAACCTGTATTAGAAAGGCTGGCCTTGTTTGAAAATTCCTCCAGGGGCCCTTCAATTAGAGGAGGCCCTGATATTATTCTTGTCATTTTCTGAAT</canonical>
            <polymorphic>AACTACAGTAAGACAATCAGCTGATCTATTTCCAGAGATCAGAAAAGGAAGAATTGAAAAAAAATTGCTCATATGCCAGTCACAAAAACTACAAGCTTCCCAAGAGAGAGAGAGAGAGAGAGAGAGAAAACATGTGCGATTTTTGAAGGTTGTTGCGCTTCTCTAAATCTGGCTTCTTTCAAAATAACATTCTAGCAGAAAAAAGCGTTTGATCAAAAAAAGAAGGAGAAGAAGAGGGTACAAAGATTATGAAGAGGGTGGGGGCTAGTCGAGTGAGCAAAAATGGAAAAGAAGAGAGCAAAAACGGATCAAACGGATATTCTTGTGTCTATAGTTTAGAAAAAGATTGGATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACMTTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGAACAATTAGTTACAGTACACAGCTACGTCAAAATGCACCAAAACCTCTATACCTTCAGATGAAAAGCCTTGAAAGAAAATAATGACCAATTCAATTAGTCAGAGTCAAAAATAACATATGTCAAAGGTGGACCGAAAAATCAGCACCCGTAAAACCTGTATTAGAAAGGCTGGCCTTGTTTGAAAATTCCTCCAGGGGCCCTTCAATTAGAGGAGGCCCTGATATTATTCTTGTCATTTTCTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGATTTCGAAGTTCAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCAAATCTCACCTATTTGTATGAC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>CAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGA</canonical_amplicon>
		<polymorphic_amplicon>CAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACMTTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29249</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>66855</contig_pos>
        <strand></strand>
        <context>gctcaattat[C/T]tcgctttcta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTAT</left_flank>
        <right_flank>TCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTG</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAGCTGATCTATTTCCAGAGATCAGAAAAGGAAGAATTGAAAAAAAATTGCTCATATGCCAGTCACAAAAACTACAAGCTTCCCAAGAGAGAGAGAGAGAGAGAGAGAGAAAACATGTGCGATTTTTGAAGGTTGTTGCGCTTCTCTAAATCTGGCTTCTTTCAAAATAACATTCTAGCAGAAAAAAGCGTTTGATCAAAAAAAGAAGGAGAAGAAGAGGGTACAAAGATTATGAAGAGGGTGGGGGCTAGTCGAGTGAGCAAAAATGGAAAAGAAGAGAGCAAAAACGGATCAAACGGATATTCTTGTGTCTATAGTTTAGAAAAAGATTGGATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGAACAATTAGTTACAGTACACAGCTACGTCAAAATGCACCAAAACCTCTATACCTTCAGATGAAAAGCCTTGAAAGAAAATAATGACCAATTCAATTAGTCAGAGTCAAAAATAACATATGTCAAAGGTGGACCGAAAAATCAGCACCCGTAAAACCTGTATTAGAAAGGCTGGCCTTGTTTGAAAATTCCTCCAGGGGCCCTTCAATTAGAGGAGGCCCTGATATTATTCTTGTCATTTTCTGAATAATTATTATCAAAAA</canonical>
            <polymorphic>ATCAGCTGATCTATTTCCAGAGATCAGAAAAGGAAGAATTGAAAAAAAATTGCTCATATGCCAGTCACAAAAACTACAAGCTTCCCAAGAGAGAGAGAGAGAGAGAGAGAGAAAACATGTGCGATTTTTGAAGGTTGTTGCGCTTCTCTAAATCTGGCTTCTTTCAAAATAACATTCTAGCAGAAAAAAGCGTTTGATCAAAAAAAGAAGGAGAAGAAGAGGGTACAAAGATTATGAAGAGGGTGGGGGCTAGTCGAGTGAGCAAAAATGGAAAAGAAGAGAGCAAAAACGGATCAAACGGATATTCTTGTGTCTATAGTTTAGAAAAAGATTGGATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATYTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGAACAATTAGTTACAGTACACAGCTACGTCAAAATGCACCAAAACCTCTATACCTTCAGATGAAAAGCCTTGAAAGAAAATAATGACCAATTCAATTAGTCAGAGTCAAAAATAACATATGTCAAAGGTGGACCGAAAAATCAGCACCCGTAAAACCTGTATTAGAAAGGCTGGCCTTGTTTGAAAATTCCTCCAGGGGCCCTTCAATTAGAGGAGGCCCTGATATTATTCTTGTCATTTTCTGAATAATTATTATCAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGATTTCGAAGTTCAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCAAATCTCACCTATTTGTATGAC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>CAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGA</canonical_amplicon>
		<polymorphic_amplicon>CAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATYTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29250</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>66873</contig_pos>
        <strand>+</strand>
        <context>ctatgagagg[A/C]ttcaaaaaat</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGG</left_flank>
        <right_flank>TTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGATCAGAAAAGGAAGAATTGAAAAAAAATTGCTCATATGCCAGTCACAAAAACTACAAGCTTCCCAAGAGAGAGAGAGAGAGAGAGAGAGAAAACATGTGCGATTTTTGAAGGTTGTTGCGCTTCTCTAAATCTGGCTTCTTTCAAAATAACATTCTAGCAGAAAAAAGCGTTTGATCAAAAAAAGAAGGAGAAGAAGAGGGTACAAAGATTATGAAGAGGGTGGGGGCTAGTCGAGTGAGCAAAAATGGAAAAGAAGAGAGCAAAAACGGATCAAACGGATATTCTTGTGTCTATAGTTTAGAAAAAGATTGGATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGAACAATTAGTTACAGTACACAGCTACGTCAAAATGCACCAAAACCTCTATACCTTCAGATGAAAAGCCTTGAAAGAAAATAATGACCAATTCAATTAGTCAGAGTCAAAAATAACATATGTCAAAGGTGGACCGAAAAATCAGCACCCGTAAAACCTGTATTAGAAAGGCTGGCCTTGTTTGAAAATTCCTCCAGGGGCCCTTCAATTAGAGGAGGCCCTGATATTATTCTTGTCATTTTCTGAATAATTATTATCAAAAAATTTGTTTAGTTTCAAGC</canonical>
            <polymorphic>AGAGATCAGAAAAGGAAGAATTGAAAAAAAATTGCTCATATGCCAGTCACAAAAACTACAAGCTTCCCAAGAGAGAGAGAGAGAGAGAGAGAGAAAACATGTGCGATTTTTGAAGGTTGTTGCGCTTCTCTAAATCTGGCTTCTTTCAAAATAACATTCTAGCAGAAAAAAGCGTTTGATCAAAAAAAGAAGGAGAAGAAGAGGGTACAAAGATTATGAAGAGGGTGGGGGCTAGTCGAGTGAGCAAAAATGGAAAAGAAGAGAGCAAAAACGGATCAAACGGATATTCTTGTGTCTATAGTTTAGAAAAAGATTGGATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGMTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGAACAATTAGTTACAGTACACAGCTACGTCAAAATGCACCAAAACCTCTATACCTTCAGATGAAAAGCCTTGAAAGAAAATAATGACCAATTCAATTAGTCAGAGTCAAAAATAACATATGTCAAAGGTGGACCGAAAAATCAGCACCCGTAAAACCTGTATTAGAAAGGCTGGCCTTGTTTGAAAATTCCTCCAGGGGCCCTTCAATTAGAGGAGGCCCTGATATTATTCTTGTCATTTTCTGAATAATTATTATCAAAAAATTTGTTTAGTTTCAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGATTTCGAAGTTCAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCAAATCTCACCTATTTGTATGAC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>CAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGA</canonical_amplicon>
		<polymorphic_amplicon>CAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGMTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29251</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>66884</contig_pos>
        <strand>+</strand>
        <context>ttcaaaaaat[G/T]tgtmaagtga</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAAT</left_flank>
        <right_flank>TGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGAAGAATTGAAAAAAAATTGCTCATATGCCAGTCACAAAAACTACAAGCTTCCCAAGAGAGAGAGAGAGAGAGAGAGAGAAAACATGTGCGATTTTTGAAGGTTGTTGCGCTTCTCTAAATCTGGCTTCTTTCAAAATAACATTCTAGCAGAAAAAAGCGTTTGATCAAAAAAAGAAGGAGAAGAAGAGGGTACAAAGATTATGAAGAGGGTGGGGGCTAGTCGAGTGAGCAAAAATGGAAAAGAAGAGAGCAAAAACGGATCAAACGGATATTCTTGTGTCTATAGTTTAGAAAAAGATTGGATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGAACAATTAGTTACAGTACACAGCTACGTCAAAATGCACCAAAACCTCTATACCTTCAGATGAAAAGCCTTGAAAGAAAATAATGACCAATTCAATTAGTCAGAGTCAAAAATAACATATGTCAAAGGTGGACCGAAAAATCAGCACCCGTAAAACCTGTATTAGAAAGGCTGGCCTTGTTTGAAAATTCCTCCAGGGGCCCTTCAATTAGAGGAGGCCCTGATATTATTCTTGTCATTTTCTGAATAATTATTATCAAAAAATTTGTTTAGTTTCAAGCAACACATTTTG</canonical>
            <polymorphic>AAGGAAGAATTGAAAAAAAATTGCTCATATGCCAGTCACAAAAACTACAAGCTTCCCAAGAGAGAGAGAGAGAGAGAGAGAGAAAACATGTGCGATTTTTGAAGGTTGTTGCGCTTCTCTAAATCTGGCTTCTTTCAAAATAACATTCTAGCAGAAAAAAGCGTTTGATCAAAAAAAGAAGGAGAAGAAGAGGGTACAAAGATTATGAAGAGGGTGGGGGCTAGTCGAGTGAGCAAAAATGGAAAAGAAGAGAGCAAAAACGGATCAAACGGATATTCTTGTGTCTATAGTTTAGAAAAAGATTGGATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATKTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGAACAATTAGTTACAGTACACAGCTACGTCAAAATGCACCAAAACCTCTATACCTTCAGATGAAAAGCCTTGAAAGAAAATAATGACCAATTCAATTAGTCAGAGTCAAAAATAACATATGTCAAAGGTGGACCGAAAAATCAGCACCCGTAAAACCTGTATTAGAAAGGCTGGCCTTGTTTGAAAATTCCTCCAGGGGCCCTTCAATTAGAGGAGGCCCTGATATTATTCTTGTCATTTTCTGAATAATTATTATCAAAAAATTTGTTTAGTTTCAAGCAACACATTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGATTTCGAAGTTCAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCAAATCTCACCTATTTGTATGAC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>CAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGA</canonical_amplicon>
		<polymorphic_amplicon>CAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATKTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29252</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>66888</contig_pos>
        <strand></strand>
        <context>aaaaatktgt[C/A]aagtgataaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGT</left_flank>
        <right_flank>AAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAAC</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAATTGAAAAAAAATTGCTCATATGCCAGTCACAAAAACTACAAGCTTCCCAAGAGAGAGAGAGAGAGAGAGAGAGAAAACATGTGCGATTTTTGAAGGTTGTTGCGCTTCTCTAAATCTGGCTTCTTTCAAAATAACATTCTAGCAGAAAAAAGCGTTTGATCAAAAAAAGAAGGAGAAGAAGAGGGTACAAAGATTATGAAGAGGGTGGGGGCTAGTCGAGTGAGCAAAAATGGAAAAGAAGAGAGCAAAAACGGATCAAACGGATATTCTTGTGTCTATAGTTTAGAAAAAGATTGGATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGAACAATTAGTTACAGTACACAGCTACGTCAAAATGCACCAAAACCTCTATACCTTCAGATGAAAAGCCTTGAAAGAAAATAATGACCAATTCAATTAGTCAGAGTCAAAAATAACATATGTCAAAGGTGGACCGAAAAATCAGCACCCGTAAAACCTGTATTAGAAAGGCTGGCCTTGTTTGAAAATTCCTCCAGGGGCCCTTCAATTAGAGGAGGCCCTGATATTATTCTTGTCATTTTCTGAATAATTATTATCAAAAAATTTGTTTAGTTTCAAGCAACACATTTTGAAGG</canonical>
            <polymorphic>AAGAATTGAAAAAAAATTGCTCATATGCCAGTCACAAAAACTACAAGCTTCCCAAGAGAGAGAGAGAGAGAGAGAGAGAAAACATGTGCGATTTTTGAAGGTTGTTGCGCTTCTCTAAATCTGGCTTCTTTCAAAATAACATTCTAGCAGAAAAAAGCGTTTGATCAAAAAAAGAAGGAGAAGAAGAGGGTACAAAGATTATGAAGAGGGTGGGGGCTAGTCGAGTGAGCAAAAATGGAAAAGAAGAGAGCAAAAACGGATCAAACGGATATTCTTGTGTCTATAGTTTAGAAAAAGATTGGATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTMAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGAACAATTAGTTACAGTACACAGCTACGTCAAAATGCACCAAAACCTCTATACCTTCAGATGAAAAGCCTTGAAAGAAAATAATGACCAATTCAATTAGTCAGAGTCAAAAATAACATATGTCAAAGGTGGACCGAAAAATCAGCACCCGTAAAACCTGTATTAGAAAGGCTGGCCTTGTTTGAAAATTCCTCCAGGGGCCCTTCAATTAGAGGAGGCCCTGATATTATTCTTGTCATTTTCTGAATAATTATTATCAAAAAATTTGTTTAGTTTCAAGCAACACATTTTGAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGATTTCGAAGTTCAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCAAATCTCACCTATTTGTATGAC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>CAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGA</canonical_amplicon>
		<polymorphic_amplicon>CAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTMAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29253</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>66938</contig_pos>
        <strand>+</strand>
        <context>tcagttgaaa[C/G]twtttttaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAA</left_flank>
        <right_flank>TTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCAAGAGAGAGAGAGAGAGAGAGAGAGAAAACATGTGCGATTTTTGAAGGTTGTTGCGCTTCTCTAAATCTGGCTTCTTTCAAAATAACATTCTAGCAGAAAAAAGCGTTTGATCAAAAAAAGAAGGAGAAGAAGAGGGTACAAAGATTATGAAGAGGGTGGGGGCTAGTCGAGTGAGCAAAAATGGAAAAGAAGAGAGCAAAAACGGATCAAACGGATATTCTTGTGTCTATAGTTTAGAAAAAGATTGGATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGAACAATTAGTTACAGTACACAGCTACGTCAAAATGCACCAAAACCTCTATACCTTCAGATGAAAAGCCTTGAAAGAAAATAATGACCAATTCAATTAGTCAGAGTCAAAAATAACATATGTCAAAGGTGGACCGAAAAATCAGCACCCGTAAAACCTGTATTAGAAAGGCTGGCCTTGTTTGAAAATTCCTCCAGGGGCCCTTCAATTAGAGGAGGCCCTGATATTATTCTTGTCATTTTCTGAATAATTATTATCAAAAAATTTGTTTAGTTTCAAGCAACACATTTTGAAGGGGGCTCTTCTAATACAGGTTTTACGGTATTTAAAAAAAATCAAAACTACA</canonical>
            <polymorphic>CCCAAGAGAGAGAGAGAGAGAGAGAGAGAAAACATGTGCGATTTTTGAAGGTTGTTGCGCTTCTCTAAATCTGGCTTCTTTCAAAATAACATTCTAGCAGAAAAAAGCGTTTGATCAAAAAAAGAAGGAGAAGAAGAGGGTACAAAGATTATGAAGAGGGTGGGGGCTAGTCGAGTGAGCAAAAATGGAAAAGAAGAGAGCAAAAACGGATCAAACGGATATTCTTGTGTCTATAGTTTAGAAAAAGATTGGATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAASTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGAACAATTAGTTACAGTACACAGCTACGTCAAAATGCACCAAAACCTCTATACCTTCAGATGAAAAGCCTTGAAAGAAAATAATGACCAATTCAATTAGTCAGAGTCAAAAATAACATATGTCAAAGGTGGACCGAAAAATCAGCACCCGTAAAACCTGTATTAGAAAGGCTGGCCTTGTTTGAAAATTCCTCCAGGGGCCCTTCAATTAGAGGAGGCCCTGATATTATTCTTGTCATTTTCTGAATAATTATTATCAAAAAATTTGTTTAGTTTCAAGCAACACATTTTGAAGGGGGCTCTTCTAATACAGGTTTTACGGTATTTAAAAAAAATCAAAACTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGATTTCGAAGTTCAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCAAATCTCACCTATTTGTATGAC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>CAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGA</canonical_amplicon>
		<polymorphic_amplicon>CAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAASTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29254</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>66940</contig_pos>
        <strand>+</strand>
        <context>agttgaaast[A/T]tttttaaata</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACT</left_flank>
        <right_flank>TTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGAGAGAGAGAGAGAGAGAGAGAGAAAACATGTGCGATTTTTGAAGGTTGTTGCGCTTCTCTAAATCTGGCTTCTTTCAAAATAACATTCTAGCAGAAAAAAGCGTTTGATCAAAAAAAGAAGGAGAAGAAGAGGGTACAAAGATTATGAAGAGGGTGGGGGCTAGTCGAGTGAGCAAAAATGGAAAAGAAGAGAGCAAAAACGGATCAAACGGATATTCTTGTGTCTATAGTTTAGAAAAAGATTGGATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGAACAATTAGTTACAGTACACAGCTACGTCAAAATGCACCAAAACCTCTATACCTTCAGATGAAAAGCCTTGAAAGAAAATAATGACCAATTCAATTAGTCAGAGTCAAAAATAACATATGTCAAAGGTGGACCGAAAAATCAGCACCCGTAAAACCTGTATTAGAAAGGCTGGCCTTGTTTGAAAATTCCTCCAGGGGCCCTTCAATTAGAGGAGGCCCTGATATTATTCTTGTCATTTTCTGAATAATTATTATCAAAAAATTTGTTTAGTTTCAAGCAACACATTTTGAAGGGGGCTCTTCTAATACAGGTTTTACGGTATTTAAAAAAAATCAAAACTACAAA</canonical>
            <polymorphic>CAAGAGAGAGAGAGAGAGAGAGAGAGAAAACATGTGCGATTTTTGAAGGTTGTTGCGCTTCTCTAAATCTGGCTTCTTTCAAAATAACATTCTAGCAGAAAAAAGCGTTTGATCAAAAAAAGAAGGAGAAGAAGAGGGTACAAAGATTATGAAGAGGGTGGGGGCTAGTCGAGTGAGCAAAAATGGAAAAGAAGAGAGCAAAAACGGATCAAACGGATATTCTTGTGTCTATAGTTTAGAAAAAGATTGGATCACATTTTTCACGTATTCTGGAGTTGGAGGAGTTTGAAAACAAGGAGATGAAACCAGGATGTTTTTGAGGATTTTTCAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTWTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGAACAATTAGTTACAGTACACAGCTACGTCAAAATGCACCAAAACCTCTATACCTTCAGATGAAAAGCCTTGAAAGAAAATAATGACCAATTCAATTAGTCAGAGTCAAAAATAACATATGTCAAAGGTGGACCGAAAAATCAGCACCCGTAAAACCTGTATTAGAAAGGCTGGCCTTGTTTGAAAATTCCTCCAGGGGCCCTTCAATTAGAGGAGGCCCTGATATTATTCTTGTCATTTTCTGAATAATTATTATCAAAAAATTTGTTTAGTTTCAAGCAACACATTTTGAAGGGGGCTCTTCTAATACAGGTTTTACGGTATTTAAAAAAAATCAAAACTACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGATTTCGAAGTTCAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCAAATCTCACCTATTTGTATGAC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>CAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTTTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGA</canonical_amplicon>
		<polymorphic_amplicon>CAGATTTCGAAGTTCAAAGAACTTTAATTCCAGATTACCAATTGTTATCTAATAGAAGTAATTACATGCACATTGAGCTCAATTATCTCGCTTTCTATGAGAGGTTTCAAAAAATCTGTCAAGTGATAAAATATTTGTGATACCATGATAAACAACTTATCAGTTGAAACTWTTTTTAAATATATTTTGAAAAAACCGAGATAATTGAGCTTATAGGTACGGATAGGGGGATCTTCTATTAGGGTAATTCGGGCTACACGGTTGAGCAGTAGGGTCATCGTCGATGCTGGATGGGTTACGATAGTCATACAAATAGGTGAGATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29255</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>70295</contig_pos>
        <strand></strand>
        <context>cttattcctt[A/C]ytccttrttc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTT</left_flank>
        <right_flank>CTCCTTGTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAGAGAAAAAAAACTTTCTTTTTAGTTTGGTTAAAGGTTGGGCAGCTTTTGAGCAAAGGACGACTAAAAACCTGATGGGTATAGTTTAACTTTGATTTCAGCAACAAACTTTGGTTGAGTAAGAGCATTTTCCAGACAAAAAAGACCACTGGGGACCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGGTTTTTCAATTTTTATTCCTTATTCGTTATTCCTTATTCCTTCGAACAATTAAAAATTTGAAATTTAAAATTAGAAAAAAACGCTTTCTAAACCTAAACTACCACTTAAAAAGTCGTTTAATGAAGCCTAAATTCCTCTTTTATACGTTTTATCAAAAAATTTCAAAACGCATTCGGCTTTTTTCGAAATTTTGTTCCGTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTACTCCTTGTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAG</canonical>
            <polymorphic>TTGAGAGAAAAAAAACTTTCTTTTTAGTTTGGTTAAAGGTTGGGCAGCTTTTGAGCAAAGGACGACTAAAAACCTGATGGGTATAGTTTAACTTTGATTTCAGCAACAAACTTTGGTTGAGTAAGAGCATTTTCCAGACAAAAAAGACCACTGGGGACCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGGTTTTTCAATTTTTATTCCTTATTCGTTATTCCTTATTCCTTCGAACAATTAAAAATTTGAAATTTAAAATTAGAAAAAAACGCTTTCTAAACCTAAACTACCACTTAAAAAGTCGTTTAATGAAGCCTAAATTCCTCTTTTATACGTTTTATCAAAAAATTTCAAAACGCATTCGGCTTTTTTCGAAATTTTGTTCCGTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTMCTCCTTGTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCCTAAATTCCTCTTTTATACG</pcr_primer_p1>
		<pcr_primer_p2>TCAGTATCTTCAAAATTGGCTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGCCTAAATTCCTCTTTTATACGTTTTATCAAAAAATTTCAAAACGCATTCGGCTTTTTTCGAAATTTTGTTCCGTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTACTCCTTGTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGA</canonical_amplicon>
		<polymorphic_amplicon>AGCCTAAATTCCTCTTTTATACGTTTTATCAAAAAATTTCAAAACGCATTCGGCTTTTTTCGAAATTTTGTTCCGTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTMCTCCTTGTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29256</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>70296</contig_pos>
        <strand></strand>
        <context>ttattccttm[C/T]tccttrttcc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTA</left_flank>
        <right_flank>TCCTTGTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGAGAAAAAAAACTTTCTTTTTAGTTTGGTTAAAGGTTGGGCAGCTTTTGAGCAAAGGACGACTAAAAACCTGATGGGTATAGTTTAACTTTGATTTCAGCAACAAACTTTGGTTGAGTAAGAGCATTTTCCAGACAAAAAAGACCACTGGGGACCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGGTTTTTCAATTTTTATTCCTTATTCGTTATTCCTTATTCCTTCGAACAATTAAAAATTTGAAATTTAAAATTAGAAAAAAACGCTTTCTAAACCTAAACTACCACTTAAAAAGTCGTTTAATGAAGCCTAAATTCCTCTTTTATACGTTTTATCAAAAAATTTCAAAACGCATTCGGCTTTTTTCGAAATTTTGTTCCGTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTACTCCTTGTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGA</canonical>
            <polymorphic>TGAGAGAAAAAAAACTTTCTTTTTAGTTTGGTTAAAGGTTGGGCAGCTTTTGAGCAAAGGACGACTAAAAACCTGATGGGTATAGTTTAACTTTGATTTCAGCAACAAACTTTGGTTGAGTAAGAGCATTTTCCAGACAAAAAAGACCACTGGGGACCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGGTTTTTCAATTTTTATTCCTTATTCGTTATTCCTTATTCCTTCGAACAATTAAAAATTTGAAATTTAAAATTAGAAAAAAACGCTTTCTAAACCTAAACTACCACTTAAAAAGTCGTTTAATGAAGCCTAAATTCCTCTTTTATACGTTTTATCAAAAAATTTCAAAACGCATTCGGCTTTTTTCGAAATTTTGTTCCGTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTAYTCCTTGTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCCTAAATTCCTCTTTTATACG</pcr_primer_p1>
		<pcr_primer_p2>TCAGTATCTTCAAAATTGGCTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGCCTAAATTCCTCTTTTATACGTTTTATCAAAAAATTTCAAAACGCATTCGGCTTTTTTCGAAATTTTGTTCCGTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTACTCCTTGTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGA</canonical_amplicon>
		<polymorphic_amplicon>AGCCTAAATTCCTCTTTTATACGTTTTATCAAAAAATTTCAAAACGCATTCGGCTTTTTTCGAAATTTTGTTCCGTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTAYTCCTTGTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29257</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>70302</contig_pos>
        <strand></strand>
        <context>cttmytcctt[G/A]ttcctgattt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTACTCCTT</left_flank>
        <right_flank>TTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAAACTTTCTTTTTAGTTTGGTTAAAGGTTGGGCAGCTTTTGAGCAAAGGACGACTAAAAACCTGATGGGTATAGTTTAACTTTGATTTCAGCAACAAACTTTGGTTGAGTAAGAGCATTTTCCAGACAAAAAAGACCACTGGGGACCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGGTTTTTCAATTTTTATTCCTTATTCGTTATTCCTTATTCCTTCGAACAATTAAAAATTTGAAATTTAAAATTAGAAAAAAACGCTTTCTAAACCTAAACTACCACTTAAAAAGTCGTTTAATGAAGCCTAAATTCCTCTTTTATACGTTTTATCAAAAAATTTCAAAACGCATTCGGCTTTTTTCGAAATTTTGTTCCGTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTACTCCTTGTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGT</canonical>
            <polymorphic>AAAAAAAACTTTCTTTTTAGTTTGGTTAAAGGTTGGGCAGCTTTTGAGCAAAGGACGACTAAAAACCTGATGGGTATAGTTTAACTTTGATTTCAGCAACAAACTTTGGTTGAGTAAGAGCATTTTCCAGACAAAAAAGACCACTGGGGACCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGGTTTTTCAATTTTTATTCCTTATTCGTTATTCCTTATTCCTTCGAACAATTAAAAATTTGAAATTTAAAATTAGAAAAAAACGCTTTCTAAACCTAAACTACCACTTAAAAAGTCGTTTAATGAAGCCTAAATTCCTCTTTTATACGTTTTATCAAAAAATTTCAAAACGCATTCGGCTTTTTTCGAAATTTTGTTCCGTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTACTCCTTRTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCCTAAATTCCTCTTTTATACG</pcr_primer_p1>
		<pcr_primer_p2>TCAGTATCTTCAAAATTGGCTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGCCTAAATTCCTCTTTTATACGTTTTATCAAAAAATTTCAAAACGCATTCGGCTTTTTTCGAAATTTTGTTCCGTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTACTCCTTGTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGA</canonical_amplicon>
		<polymorphic_amplicon>AGCCTAAATTCCTCTTTTATACGTTTTATCAAAAAATTTCAAAACGCATTCGGCTTTTTTCGAAATTTTGTTCCGTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTACTCCTTRTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29258</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>70460</contig_pos>
        <strand></strand>
        <context>aacttggagc[C/T]aatttatgtc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGC</left_flank>
        <right_flank>AATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGCGGAATTCCTTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGGTTTTTCAATTTTTATTCCTTATTCGTTATTCCTTATTCCTTCGAACAATTAAAAATTTGAAATTTAAAATTAGAAAAAAACGCTTTCTAAACCTAAACTACCACTTAAAAAGTCGTTTAATGAAGCCTAAATTCCTCTTTTATACGTTTTATCAAAAAATTTCAAAACGCATTCGGCTTTTTTCGAAATTTTGTTCCGTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTACTCCTTGTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCG</canonical>
            <polymorphic>GAGCGGAATTCCTTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGGTTTTTCAATTTTTATTCCTTATTCGTTATTCCTTATTCCTTCGAACAATTAAAAATTTGAAATTTAAAATTAGAAAAAAACGCTTTCTAAACCTAAACTACCACTTAAAAAGTCGTTTAATGAAGCCTAAATTCCTCTTTTATACGTTTTATCAAAAAATTTCAAAACGCATTCGGCTTTTTTCGAAATTTTGTTCCGTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTACTCCTTGTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCYAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>217 207 176 123 119 51 43 36 28</canonical_bands>
                <polymorphic_bands>217 207 176 159 119 51 43 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCAATTTTGAAGATACTGAAC</pcr_primer_p1>
		<pcr_primer_p2>AGTTAAACCCCAACATGAACT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACT</canonical_amplicon>
		<polymorphic_amplicon>GCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCYAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29259</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>70482</contig_pos>
        <strand></strand>
        <context>gttctcgtct[A/G]aggyaacaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCT</left_flank>
        <right_flank>AGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAAT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGGTTTTTCAATTTTTATTCCTTATTCGTTATTCCTTATTCCTTCGAACAATTAAAAATTTGAAATTTAAAATTAGAAAAAAACGCTTTCTAAACCTAAACTACCACTTAAAAAGTCGTTTAATGAAGCCTAAATTCCTCTTTTATACGTTTTATCAAAAAATTTCAAAACGCATTCGGCTTTTTTCGAAATTTTGTTCCGTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTACTCCTTGTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCA</canonical>
            <polymorphic>TTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGGTTTTTCAATTTTTATTCCTTATTCGTTATTCCTTATTCCTTCGAACAATTAAAAATTTGAAATTTAAAATTAGAAAAAAACGCTTTCTAAACCTAAACTACCACTTAAAAAGTCGTTTAATGAAGCCTAAATTCCTCTTTTATACGTTTTATCAAAAAATTTCAAAACGCATTCGGCTTTTTTCGAAATTTTGTTCCGTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTACTCCTTGTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTRAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCAATTTTGAAGATACTGAAC</pcr_primer_p1>
		<pcr_primer_p2>AGTTAAACCCCAACATGAACT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACT</canonical_amplicon>
		<polymorphic_amplicon>GCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTRAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29260</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>70486</contig_pos>
        <strand></strand>
        <context>tcgtctragg[T/C]aacaaaagta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGG</left_flank>
        <right_flank>AACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGGTTTTTCAATTTTTATTCCTTATTCGTTATTCCTTATTCCTTCGAACAATTAAAAATTTGAAATTTAAAATTAGAAAAAAACGCTTTCTAAACCTAAACTACCACTTAAAAAGTCGTTTAATGAAGCCTAAATTCCTCTTTTATACGTTTTATCAAAAAATTTCAAAACGCATTCGGCTTTTTTCGAAATTTTGTTCCGTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTACTCCTTGTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCA</canonical>
            <polymorphic>TTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGGTTTTTCAATTTTTATTCCTTATTCGTTATTCCTTATTCCTTCGAACAATTAAAAATTTGAAATTTAAAATTAGAAAAAAACGCTTTCTAAACCTAAACTACCACTTAAAAAGTCGTTTAATGAAGCCTAAATTCCTCTTTTATACGTTTTATCAAAAAATTTCAAAACGCATTCGGCTTTTTTCGAAATTTTGTTCCGTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTACTCCTTGTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGYAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>498 308 194</canonical_bands>
                <polymorphic_bands>692 308</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCAATTTTGAAGATACTGAAC</pcr_primer_p1>
		<pcr_primer_p2>AGTTAAACCCCAACATGAACT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACT</canonical_amplicon>
		<polymorphic_amplicon>GCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGYAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29261</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>70528</contig_pos>
        <strand></strand>
        <context>aatgttatga[C/T]gaatcttttg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGA</left_flank>
        <right_flank>GAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCTTCTTCCGGGTTTTTCAATTTTTATTCCTTATTCGTTATTCCTTATTCCTTCGAACAATTAAAAATTTGAAATTTAAAATTAGAAAAAAACGCTTTCTAAACCTAAACTACCACTTAAAAAGTCGTTTAATGAAGCCTAAATTCCTCTTTTATACGTTTTATCAAAAAATTTCAAAACGCATTCGGCTTTTTTCGAAATTTTGTTCCGTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTACTCCTTGTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAAT</canonical>
            <polymorphic>TTCCTTCTTCCGGGTTTTTCAATTTTTATTCCTTATTCGTTATTCCTTATTCCTTCGAACAATTAAAAATTTGAAATTTAAAATTAGAAAAAAACGCTTTCTAAACCTAAACTACCACTTAAAAAGTCGTTTAATGAAGCCTAAATTCCTCTTTTATACGTTTTATCAAAAAATTTCAAAACGCATTCGGCTTTTTTCGAAATTTTGTTCCGTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTACTCCTTGTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGAYGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCAATTTTGAAGATACTGAAC</pcr_primer_p1>
		<pcr_primer_p2>AGTTAAACCCCAACATGAACT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACT</canonical_amplicon>
		<polymorphic_amplicon>GCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGAYGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29262</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>70540</contig_pos>
        <strand></strand>
        <context>aatcttttgg[T/C]agttgataac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGG</left_flank>
        <right_flank>AGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTTTTCAATTTTTATTCCTTATTCGTTATTCCTTATTCCTTCGAACAATTAAAAATTTGAAATTTAAAATTAGAAAAAAACGCTTTCTAAACCTAAACTACCACTTAAAAAGTCGTTTAATGAAGCCTAAATTCCTCTTTTATACGTTTTATCAAAAAATTTCAAAACGCATTCGGCTTTTTTCGAAATTTTGTTCCGTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTACTCCTTGTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAATACGGAAAAAAAA</canonical>
            <polymorphic>GGTTTTTCAATTTTTATTCCTTATTCGTTATTCCTTATTCCTTCGAACAATTAAAAATTTGAAATTTAAAATTAGAAAAAAACGCTTTCTAAACCTAAACTACCACTTAAAAAGTCGTTTAATGAAGCCTAAATTCCTCTTTTATACGTTTTATCAAAAAATTTCAAAACGCATTCGGCTTTTTTCGAAATTTTGTTCCGTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTACTCCTTGTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGYAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAATACGGAAAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCAATTTTGAAGATACTGAAC</pcr_primer_p1>
		<pcr_primer_p2>AGTTAAACCCCAACATGAACT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACT</canonical_amplicon>
		<polymorphic_amplicon>GCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGYAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29263</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>70569</contig_pos>
        <strand></strand>
        <context>gtcttttaca[G/A]gagatatatg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACA</left_flank>
        <right_flank>GAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCCTTATTCCTTCGAACAATTAAAAATTTGAAATTTAAAATTAGAAAAAAACGCTTTCTAAACCTAAACTACCACTTAAAAAGTCGTTTAATGAAGCCTAAATTCCTCTTTTATACGTTTTATCAAAAAATTTCAAAACGCATTCGGCTTTTTTCGAAATTTTGTTCCGTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTACTCCTTGTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGAAA</canonical>
            <polymorphic>ATTCCTTATTCCTTCGAACAATTAAAAATTTGAAATTTAAAATTAGAAAAAAACGCTTTCTAAACCTAAACTACCACTTAAAAAGTCGTTTAATGAAGCCTAAATTCCTCTTTTATACGTTTTATCAAAAAATTTCAAAACGCATTCGGCTTTTTTCGAAATTTTGTTCCGTATTCCTTATTCCTTCTTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTACTCCTTGTTCCTGATTTTCAATTTTTGTTCCTTATTCCTTATTCCTTCTTCCAGATTTTCAAAAATTTTATTCCGCTCATGTCTGCTGGGGACGTTAAGCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACARGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCAATTTTGAAGATACTGAAC</pcr_primer_p1>
		<pcr_primer_p2>AGTTAAACCCCAACATGAACT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACT</canonical_amplicon>
		<polymorphic_amplicon>GCCAATTTTGAAGATACTGAACTCTCCAGCTACGATAAAGTGATCTTTTAACTTTCAACTTGGAGCCAATTTATGTCGGTTCTCGTCTAAGGTAACAAAAGTAGTTGACTGTCAAAATATGTTTAATGTTATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACARGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29264</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>71023</contig_pos>
        <strand>+</strand>
        <context>CACGGGAGAG[A/G]AAAATACGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAG</left_flank>
        <right_flank>AAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGAAAAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGAAAAAGTGACTCAACGTTCTCAAGCTGCTACCAGGAAGTGAAATTTTCAGAACGATTTCTTATCACAGTATCAGAAAACAAACTCGGCAAGATAAAAGAGGGAGAAAACCCTGAAGTTTGAATGACATACCTAAAGCATGATGGACGCAACCTTCTACAAAAATATTTGCTAGTCTGAAAATCTAAATCCAGGAATTTCTCTCTATTTAAAGACAACGCCCAACTCCGCCCTTCTAATCCGGTGCACCCAGAAACTGGGCGGGGCCTGTAGTACTAGATCAAAATGTGATAACATCTGTTTGACAAAGCTACATACACACAACGAGACTGTCCGATAAGACAATGTTCCTGGATACGTTCCGTCTTTTGTGTTTTGAATAGGTGTACGCGGGGAAGAAGGATGAAGCGGGGAGAAGTCTTCATCGGGCACGATTTTGATCTTCTGATCATGTGTGTG</canonical>
            <polymorphic>ATGACGAATCTTTTGGTAGTTGATAACTTTTTGGAGTCTTTTACAGGAGATATATGGGCTCAAAGTTGACAGGTTCGGGGCATTCTATTAAAGTGATTACGGTAGTTCATGTTGGGGTTTAACTTTCTTTAGAAGGTGTGTAAATGCTTTGAGAAGTTACCGGAATCAATTAAGCAGCTAAAGATCGATTTTTCTCAAACTTCCGGACCTTAAAAGTCAGCTCTGTTGTACTTTCAAGTATATTTAAGCATAACTATACTGAGTCTCATAAGAACCCGTTCCCACTCGAATCCTACCGTATCCTCATTAACAACATATTCTCTTACCTTACACCAATACACGCAAATCGCCTAGCGCCTCCCATCAGATTGCCCAATCTTCCGAAAAAATTTTAAAGAATCCTGAAGCGCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGRAAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGAAAAAGTGACTCAACGTTCTCAAGCTGCTACCAGGAAGTGAAATTTTCAGAACGATTTCTTATCACAGTATCAGAAAACAAACTCGGCAAGATAAAAGAGGGAGAAAACCCTGAAGTTTGAATGACATACCTAAAGCATGATGGACGCAACCTTCTACAAAAATATTTGCTAGTCTGAAAATCTAAATCCAGGAATTTCTCTCTATTTAAAGACAACGCCCAACTCCGCCCTTCTAATCCGGTGCACCCAGAAACTGGGCGGGGCCTGTAGTACTAGATCAAAATGTGATAACATCTGTTTGACAAAGCTACATACACACAACGAGACTGTCCGATAAGACAATGTTCCTGGATACGTTCCGTCTTTTGTGTTTTGAATAGGTGTACGCGGGGAAGAAGGATGAAGCGGGGAGAAGTCTTCATCGGGCACGATTTTGATCTTCTGATCATGTGTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCATTTGAATCTTTGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>GGTTTTCTCCCTCTTTTATCTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGAAAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGAAAAAGTGACTCAACGTTCTCAAGCTGCTACCAGGAAGTGAAATTTTCAGAACGATTTCTTATCACAGTATCAGAAAACAAACTCGGCAAGATAAAAGAGGGAGAAAACC</canonical_amplicon>
		<polymorphic_amplicon>GCATTTGAATCTTTGGAAAAAATTTAGCGGGATAAGATCGCACATTCATCACGCAGAGAATTGAATTCCTGTTAGGCTGATCACGGGAGAGRAAAATACGGAAAAAAAAGGAACAGAGAATAGTTTTGTTAGCCGAAAAAGTGACTCAACGTTCTCAAGCTGCTACCAGGAAGTGAAATTTTCAGAACGATTTCTTATCACAGTATCAGAAAACAAACTCGGCAAGATAAAAGAGGGAGAAAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29265</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>71986</contig_pos>
        <strand></strand>
        <context>ctgaaagtca[C/T]ccttttcccc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTGGAAATTCCTAGTTTTTCAGATATTTGCGAATTTCTGAAAGTCA</left_flank>
        <right_flank>CCTTTTCCCCTTTTTTTTGTACTGAAAAATGAAAAAAACAAGCGTTCTTT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCGGGCACGATTTTGATCTTCTGATCATGTGTGTGGTGAATCGCCTGTGGATATTTTTTGTTGATAGAAAAAGACAGAGAATAATTAGAGATAACGAAGCACGGGATAGAACACGTTTTACGATGTTTTTTTCTTGAGTTTTGAAATTCGTTGGATTGGTCGTGTGTCTTGGTTAGCGTGGGAACGGGAGGTGTCTATATAAGCTAGGAATATCCCAGGATGATTTTTTTTGGTCATTTTTTTATTGAAAATAATATTATACGTTTCTAGCAAGTATTCATATACAGTATCAGTACAGTATCAGTCAATAAGATATACAATAACGTCAATTTCAGTGGATTTCAACCATTTTCAGGAGTCTGAAGCTCGGCTGTCAAGTTTTCGATCAATTCGAAAACTTTGGAGAGTGTGATACAGACCTAGATTGAAAACTTTGCTTTTACAGAATTTTTTGGAAATTCCTAGTTTTTCAGATATTTGCGAATTTCTGAAAGTCACCCTTTTCCCCTTTTTTTTGTACTGAAAAATGAAAAAAACAAGCGTTCTTTGGAAATCGGCAAATAGCTGAAAAATTAGGGATTTTCAAAAAGTGATCGGACACTTGACAACCGAGCTACAGATTCCTGAAAATGGTCAAAATGGCTCAAAATTCATTGAAAAATACGTTGTTGTATATCTTATTGACTCTTGAGTTCAAAAAACTAAAGATTCTGACTGCAAATTTGAAAAAAAAGTTTCTTGGAAAAATAGTAGTGCCCATTTGAATCAGCTTATTTTATAAAACCAGAATTAAGCCCTGGCTCGGCAAATGAAATCTGTAAAATTGAAACTTGAGCGATCAAAAGAAAAAAAAACAGATGAAAGTCTTATGAATTCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCCCT</canonical>
            <polymorphic>CATCGGGCACGATTTTGATCTTCTGATCATGTGTGTGGTGAATCGCCTGTGGATATTTTTTGTTGATAGAAAAAGACAGAGAATAATTAGAGATAACGAAGCACGGGATAGAACACGTTTTACGATGTTTTTTTCTTGAGTTTTGAAATTCGTTGGATTGGTCGTGTGTCTTGGTTAGCGTGGGAACGGGAGGTGTCTATATAAGCTAGGAATATCCCAGGATGATTTTTTTTGGTCATTTTTTTATTGAAAATAATATTATACGTTTCTAGCAAGTATTCATATACAGTATCAGTACAGTATCAGTCAATAAGATATACAATAACGTCAATTTCAGTGGATTTCAACCATTTTCAGGAGTCTGAAGCTCGGCTGTCAAGTTTTCGATCAATTCGAAAACTTTGGAGAGTGTGATACAGACCTAGATTGAAAACTTTGCTTTTACAGAATTTTTTGGAAATTCCTAGTTTTTCAGATATTTGCGAATTTCTGAAAGTCAYCCTTTTCCCCTTTTTTTTGTACTGAAAAATGAAAAAAACAAGCGTTCTTTGGAAATCGGCAAATAGCTGAAAAATTAGGGATTTTCAAAAAGTGATCGGACACTTGACAACCGAGCTACAGATTCCTGAAAATGGTCAAAATGGCTCAAAATTCATTGAAAAATACGTTGTTGTATATCTTATTGACTCTTGAGTTCAAAAAACTAAAGATTCTGACTGCAAATTTGAAAAAAAAGTTTCTTGGAAAAATAGTAGTGCCCATTTGAATCAGCTTATTTTATAAAACCAGAATTAAGCCCTGGCTCGGCAAATGAAATCTGTAAAATTGAAACTTGAGCGATCAAAAGAAAAAAAAACAGATGAAAGTCTTATGAATTCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>234 155 144 95 86 72 52 51 24 14 13 12 11 9 9 8 3 2 2 2 2</canonical_bands>
                <polymorphic_bands>234 181 155 144 72 52 51 24 14 13 12 11 9 9 8 3 2 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>495 480 25</canonical_bands>
                <polymorphic_bands>975 25</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTTTCTAGCAAGTATTCATATACA</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAATTTGCAGTCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>467</pcr_amplicon_size>
		<canonical_amplicon>CGTTTCTAGCAAGTATTCATATACAGTATCAGTACAGTATCAGTCAATAAGATATACAATAACGTCAATTTCAGTGGATTTCAACCATTTTCAGGAGTCTGAAGCTCGGCTGTCAAGTTTTCGATCAATTCGAAAACTTTGGAGAGTGTGATACAGACCTAGATTGAAAACTTTGCTTTTACAGAATTTTTTGGAAATTCCTAGTTTTTCAGATATTTGCGAATTTCTGAAAGTCACCCTTTTCCCCTTTTTTTTGTACTGAAAAATGAAAAAAACAAGCGTTCTTTGGAAATCGGCAAATAGCTGAAAAATTAGGGATTTTCAAAAAGTGATCGGACACTTGACAACCGAGCTACAGATTCCTGAAAATGGTCAAAATGGCTCAAAATTCATTGAAAAATACGTTGTTGTATATCTTATTGACTCTTGAGTTCAAAAAACTAAAGATTCTGACTGCAAATTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>CGTTTCTAGCAAGTATTCATATACAGTATCAGTACAGTATCAGTCAATAAGATATACAATAACGTCAATTTCAGTGGATTTCAACCATTTTCAGGAGTCTGAAGCTCGGCTGTCAAGTTTTCGATCAATTCGAAAACTTTGGAGAGTGTGATACAGACCTAGATTGAAAACTTTGCTTTTACAGAATTTTTTGGAAATTCCTAGTTTTTCAGATATTTGCGAATTTCTGAAAGTCAYCCTTTTCCCCTTTTTTTTGTACTGAAAAATGAAAAAAACAAGCGTTCTTTGGAAATCGGCAAATAGCTGAAAAATTAGGGATTTTCAAAAAGTGATCGGACACTTGACAACCGAGCTACAGATTCCTGAAAATGGTCAAAATGGCTCAAAATTCATTGAAAAATACGTTGTTGTATATCTTATTGACTCTTGAGTTCAAAAAACTAAAGATTCTGACTGCAAATTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29266</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>72173</contig_pos>
        <strand></strand>
        <context>atcttattga[C/T]TCTTGAGTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAAATGGCTCAAAATTCATTGAAAAATACGTTGTTGTATATCTTATTGA</left_flank>
        <right_flank>TCTTGAGTTCAAAAAACTAAAGATTCTGACTGCAAATTTGAAAAAAAAGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGAGGTGTCTATATAAGCTAGGAATATCCCAGGATGATTTTTTTTGGTCATTTTTTTATTGAAAATAATATTATACGTTTCTAGCAAGTATTCATATACAGTATCAGTACAGTATCAGTCAATAAGATATACAATAACGTCAATTTCAGTGGATTTCAACCATTTTCAGGAGTCTGAAGCTCGGCTGTCAAGTTTTCGATCAATTCGAAAACTTTGGAGAGTGTGATACAGACCTAGATTGAAAACTTTGCTTTTACAGAATTTTTTGGAAATTCCTAGTTTTTCAGATATTTGCGAATTTCTGAAAGTCACCCTTTTCCCCTTTTTTTTGTACTGAAAAATGAAAAAAACAAGCGTTCTTTGGAAATCGGCAAATAGCTGAAAAATTAGGGATTTTCAAAAAGTGATCGGACACTTGACAACCGAGCTACAGATTCCTGAAAATGGTCAAAATGGCTCAAAATTCATTGAAAAATACGTTGTTGTATATCTTATTGACTCTTGAGTTCAAAAAACTAAAGATTCTGACTGCAAATTTGAAAAAAAAGTTTCTTGGAAAAATAGTAGTGCCCATTTGAATCAGCTTATTTTATAAAACCAGAATTAAGCCCTGGCTCGGCAAATGAAATCTGTAAAATTGAAACTTGAGCGATCAAAAGAAAAAAAAACAGATGAAAGTCTTATGAATTCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAG</canonical>
            <polymorphic>GGGAGGTGTCTATATAAGCTAGGAATATCCCAGGATGATTTTTTTTGGTCATTTTTTTATTGAAAATAATATTATACGTTTCTAGCAAGTATTCATATACAGTATCAGTACAGTATCAGTCAATAAGATATACAATAACGTCAATTTCAGTGGATTTCAACCATTTTCAGGAGTCTGAAGCTCGGCTGTCAAGTTTTCGATCAATTCGAAAACTTTGGAGAGTGTGATACAGACCTAGATTGAAAACTTTGCTTTTACAGAATTTTTTGGAAATTCCTAGTTTTTCAGATATTTGCGAATTTCTGAAAGTCACCCTTTTCCCCTTTTTTTTGTACTGAAAAATGAAAAAAACAAGCGTTCTTTGGAAATCGGCAAATAGCTGAAAAATTAGGGATTTTCAAAAAGTGATCGGACACTTGACAACCGAGCTACAGATTCCTGAAAATGGTCAAAATGGCTCAAAATTCATTGAAAAATACGTTGTTGTATATCTTATTGAYTCTTGAGTTCAAAAAACTAAAGATTCTGACTGCAAATTTGAAAAAAAAGTTTCTTGGAAAAATAGTAGTGCCCATTTGAATCAGCTTATTTTATAAAACCAGAATTAAGCCCTGGCTCGGCAAATGAAATCTGTAAAATTGAAACTTGAGCGATCAAAAGAAAAAAAAACAGATGAAAGTCTTATGAATTCCATAGAATCAGGGTTAATTGGAAGACCGAAACCCAGTATTCCGAAGATTTTCATTTAGTTTTTCTTTCGTTTCCAATTTTTTTGTATACATAAATAGGTAACAACCTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTTCTAGCAAGTATTCATATACA</pcr_primer_p1>
		<pcr_primer_p2>GCACTACTATTTTTCCAAGAAACT</pcr_primer_p2>
		<pcr_amplicon_size>495</pcr_amplicon_size>
		<canonical_amplicon>CGTTTCTAGCAAGTATTCATATACAGTATCAGTACAGTATCAGTCAATAAGATATACAATAACGTCAATTTCAGTGGATTTCAACCATTTTCAGGAGTCTGAAGCTCGGCTGTCAAGTTTTCGATCAATTCGAAAACTTTGGAGAGTGTGATACAGACCTAGATTGAAAACTTTGCTTTTACAGAATTTTTTGGAAATTCCTAGTTTTTCAGATATTTGCGAATTTCTGAAAGTCACCCTTTTCCCCTTTTTTTTGTACTGAAAAATGAAAAAAACAAGCGTTCTTTGGAAATCGGCAAATAGCTGAAAAATTAGGGATTTTCAAAAAGTGATCGGACACTTGACAACCGAGCTACAGATTCCTGAAAATGGTCAAAATGGCTCAAAATTCATTGAAAAATACGTTGTTGTATATCTTATTGACTCTTGAGTTCAAAAAACTAAAGATTCTGACTGCAAATTTGAAAAAAAAGTTTCTTGGAAAAATAGTAGTGC</canonical_amplicon>
		<polymorphic_amplicon>CGTTTCTAGCAAGTATTCATATACAGTATCAGTACAGTATCAGTCAATAAGATATACAATAACGTCAATTTCAGTGGATTTCAACCATTTTCAGGAGTCTGAAGCTCGGCTGTCAAGTTTTCGATCAATTCGAAAACTTTGGAGAGTGTGATACAGACCTAGATTGAAAACTTTGCTTTTACAGAATTTTTTGGAAATTCCTAGTTTTTCAGATATTTGCGAATTTCTGAAAGTCACCCTTTTCCCCTTTTTTTTGTACTGAAAAATGAAAAAAACAAGCGTTCTTTGGAAATCGGCAAATAGCTGAAAAATTAGGGATTTTCAAAAAGTGATCGGACACTTGACAACCGAGCTACAGATTCCTGAAAATGGTCAAAATGGCTCAAAATTCATTGAAAAATACGTTGTTGTATATCTTATTGAYTCTTGAGTTCAAAAAACTAAAGATTCTGACTGCAAATTTGAAAAAAAAGTTTCTTGGAAAAATAGTAGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29267</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>72969</contig_pos>
        <strand>+</strand>
        <context>CTGAGAGAGA[A/G]AGAAAAGAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATCACCGTCAACCCACTCATTCGAAAATCAACAATAGACTGAGAGAGA</left_flank>
        <right_flank>AGAAAAGAGCAAACAGCTAACAAAACACTCACAGATCACTGCTCGCATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAGTAGTCTTTGTTTTTGTTAATCGCTGTAGAACTGGAAACAGTTTGAGGAACCGAAAAATGAATAACAAGAATTTTCCAGGTCGGAAAATGTTGTTTTTTCTTTTCGTTCTCTAGGTTTTTGAAAAGTAGGTAAAAATATGTTTTTTAGTCTTGAAAATATTTCAATTTTGAAAATAAAAAACTGATTATACAACAAGAAACAAAATGTTCCAACACATTGTGAACTGTGTCAACTGGGGGGAGAAGAAATCACCGTCAACCCACTCATTCGAAAATCAACAATAGACTGAGAGAGAAAGAAAAGAGCAAACAGCTAACAAAACACTCACAGATCACTGCTCGCATATTTAGCGCTCTCTTGAATCAGACTACATTCATGTTTGGCTCCTCGTCTCTGCTTTTTTTTCAGACACATAACATTGGGGGAAACCTTTAAGAGAGCGAACAAAATTTGTGTCCGACTGACTTGTTGGCTGCAAAAATGAATTAATAATTCACAACAGCACGTTGTGGAGACAAGCGACCAAAGTTTGACATATTTTGAGACATGATGTTCAATGCAAAATTTTAAATGAATTTTAGACTAAAATTAGCCGTTGTTTGCCTGAAACAAGAGCCGAGTAAACGAGGCTTATTCTAGAAACAAGCGAGTTTGAACAAAGTAAAATGGTACTGAAACGAAATGGTAGGAATGGTACTGTATTCTTTAATTCTTCTTCAATTCTTCATTCTTCTTTTTCGTTCTGTAATTGTTGCAATTTTCGTAAAAAAAAATCACGCTCCCTAACGAGCAAGAC</canonical>
            <polymorphic>CTAAACCACTTTTCCCTAAAATCCTGATCACATTTATGCTACGAGTACAGTACCGCGGATTCTAACTTTCAAAAAGAAAACTTGTTTACTTTTTGCAAACGATTAGTCTACACATTCCAACTCCCCAACTGGTCAAATAATGATCTTTTCAAAAATAGCTGATTTGCCAAACTGAATGGAAGAATCGGGAAATACTTGCTACAGTAGTCTTTGTTTTTGTTAATCGCTGTAGAACTGGAAACAGTTTGAGGAACCGAAAAATGAATAACAAGAATTTTCCAGGTCGGAAAATGTTGTTTTTTCTTTTCGTTCTCTAGGTTTTTGAAAAGTAGGTAAAAATATGTTTTTTAGTCTTGAAAATATTTCAATTTTGAAAATAAAAAACTGATTATACAACAAGAAACAAAATGTTCCAACACATTGTGAACTGTGTCAACTGGGGGGAGAAGAAATCACCGTCAACCCACTCATTCGAAAATCAACAATAGACTGAGAGAGARAGAAAAGAGCAAACAGCTAACAAAACACTCACAGATCACTGCTCGCATATTTAGCGCTCTCTTGAATCAGACTACATTCATGTTTGGCTCCTCGTCTCTGCTTTTTTTTCAGACACATAACATTGGGGGAAACCTTTAAGAGAGCGAACAAAATTTGTGTCCGACTGACTTGTTGGCTGCAAAAATGAATTAATAATTCACAACAGCACGTTGTGGAGACAAGCGACCAAAGTTTGACATATTTTGAGACATGATGTTCAATGCAAAATTTTAAATGAATTTTAGACTAAAATTAGCCGTTGTTTGCCTGAAACAAGAGCCGAGTAAACGAGGCTTATTCTAGAAACAAGCGAGTTTGAACAAAGTAAAATGGTACTGAAACGAAATGGTAGGAATGGTACTGTATTCTTTAATTCTTCTTCAATTCTTCATTCTTCTTTTTCGTTCTGTAATTGTTGCAATTTTCGTAAAAAAAAATCACGCTCCCTAACGAGCAAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGTTTTTGAAAAGTAGGTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTCAAGAGAGCGCTAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGGTTTTTGAAAAGTAGGTAAAAATATGTTTTTTAGTCTTGAAAATATTTCAATTTTGAAAATAAAAAACTGATTATACAACAAGAAACAAAATGTTCCAACACATTGTGAACTGTGTCAACTGGGGGGAGAAGAAATCACCGTCAACCCACTCATTCGAAAATCAACAATAGACTGAGAGAGAAAGAAAAGAGCAAACAGCTAACAAAACACTCACAGATCACTGCTCGCATATTTAGCGCTCTCTTGAAT</canonical_amplicon>
		<polymorphic_amplicon>AGGTTTTTGAAAAGTAGGTAAAAATATGTTTTTTAGTCTTGAAAATATTTCAATTTTGAAAATAAAAAACTGATTATACAACAAGAAACAAAATGTTCCAACACATTGTGAACTGTGTCAACTGGGGGGAGAAGAAATCACCGTCAACCCACTCATTCGAAAATCAACAATAGACTGAGAGAGARAGAAAAGAGCAAACAGCTAACAAAACACTCACAGATCACTGCTCGCATATTTAGCGCTCTCTTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29268</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>91689</contig_pos>
        <strand>+</strand>
        <context>TTCTCGTCTC[C/T]ATAACTGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCAATCTTCATTATCCCTCTACGGTCCGACGTCTTTCCTTCTCGTCTC</left_flank>
        <right_flank>ATAACTGAAACGATTTCCGATATCATTATCAATTGAACATGTCTCAACTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCGTGCCCGGGGGGTCGGGGCACGCATGCGTTTTGCGTGCCGTCGCCGTACCGTTGCCGTGCTCATGTGTGCCGTTTTTTGAATTTTTTTTCCTCGAAATTGGGTGGATTGATTGATTCTCCTTTTATCAAACAGTTTATTAGAAACTCAACAAAAATTAAAACATTTAAAAGATGAGAAAATTTAAATTTGTAGAGAAGATTGCGAAGATAGTGATGATGAAGTTGATGATTTTTGATGAAACTAAGTTTCTTCCTTCTGTTCTCCAGCTTCATTGATCTCGAGCTTGGCTTTGTCTCTCTGGCCTGAAAATAGGAAATAAAACTATCATTTTGAAATATTTTTGAACTTTGTTATTTTCAAAAAACAATGGTCCGTTTTTCACATATTGCTCCCAACTTACATATTTCATTAGAAATATTCCTCGTTGCTGGTCGGAAACTAATTTCTCAATCTTCATTATCCCTCTACGGTCCGACGTCTTTCCTTCTCGTCTCCATAACTGAAACGATTTCCGATATCATTATCAATTGAACATGTCTCAACTTACCGATTTTCCTTCGGTGCCTTTCAAACTCTTTTCAACTCTAAAACATCTGCTACAGCTACTGTCTGAAAACTAAACAGAGACACATTTCATGATTTTCCATCGGAAATGACAAGAGAACACATATAAAAAAACTATAAAACGATAAAAATATGAATTTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAGATGCGCAGATGGTTCAAGAAGGGGCACGGCACCGGCACGGTAGCGGCACGCCATACGCGCGCTAGTGGCACGGTTGAGGTGTTCCAAGGGCACTTTGGACGCCGCACGGTGCCGTTTTGATGCAAATCCTGTGCCCCTCTGTGTTTTAGCGTGCGGAAAATTTGCTGAGCAGGTGTTATTTGATTTCCAGAATAAGACATAACAAACTCAAATTCACATCATGTTCTTTTTAACTTGG</canonical>
            <polymorphic>AATCGTGCCCGGGGGGTCGGGGCACGCATGCGTTTTGCGTGCCGTCGCCGTACCGTTGCCGTGCTCATGTGTGCCGTTTTTTGAATTTTTTTTCCTCGAAATTGGGTGGATTGATTGATTCTCCTTTTATCAAACAGTTTATTAGAAACTCAACAAAAATTAAAACATTTAAAAGATGAGAAAATTTAAATTTGTAGAGAAGATTGCGAAGATAGTGATGATGAAGTTGATGATTTTTGATGAAACTAAGTTTCTTCCTTCTGTTCTCCAGCTTCATTGATCTCGAGCTTGGCTTTGTCTCTCTGGCCTGAAAATAGGAAATAAAACTATCATTTTGAAATATTTTTGAACTTTGTTATTTTCAAAAAACAATGGTCCGTTTTTCACATATTGCTCCCAACTTACATATTTCATTAGAAATATTCCTCGTTGCTGGTCGGAAACTAATTTCTCAATCTTCATTATCCCTCTACGGTCCGACGTCTTTCCTTCTCGTCTCYATAACTGAAACGATTTCCGATATCATTATCAATTGAACATGTCTCAACTTACCGATTTTCCTTCGGTGCCTTTCAAACTCTTTTCAACTCTAAAACATCTGCTACAGCTACTGTCTGAAAACTAAACAGAGACACATTTCATGATTTTCCATCGGAAATGACAAGAGAACACATATAAAAAAACTATAAAACGATAAAAATATGAATTTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAGATGCGCAGATGGTTCAAGAAGGGGCACGGCACCGGCACGGTAGCGGCACGCCATACGCGCGCTAGTGGCACGGTTGAGGTGTTCCAAGGGCACTTTGGACGCCGCACGGTGCCGTTTTGATGCAAATCCTGTGCCCCTCTGTGTTTTAGCGTGCGGAAAATTTGCTGAGCAGGTGTTATTTGATTTCCAGAATAAGACATAACAAACTCAAATTCACATCATGTTCTTTTTAACTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATATTGCTCCCAACTTACATA</pcr_primer_p1>
		<pcr_primer_p2>TCTGTTTAGTTTTCAGACAGTAGC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACATATTGCTCCCAACTTACATATTTCATTAGAAATATTCCTCGTTGCTGGTCGGAAACTAATTTCTCAATCTTCATTATCCCTCTACGGTCCGACGTCTTTCCTTCTCGTCTCCATAACTGAAACGATTTCCGATATCATTATCAATTGAACATGTCTCAACTTACCGATTTTCCTTCGGTGCCTTTCAAACTCTTTTCAACTCTAAAACATCTGCTACAGCTACTGTCTGAAAACTAAACAGA</canonical_amplicon>
		<polymorphic_amplicon>ACATATTGCTCCCAACTTACATATTTCATTAGAAATATTCCTCGTTGCTGGTCGGAAACTAATTTCTCAATCTTCATTATCCCTCTACGGTCCGACGTCTTTCCTTCTCGTCTCYATAACTGAAACGATTTCCGATATCATTATCAATTGAACATGTCTCAACTTACCGATTTTCCTTCGGTGCCTTTCAAACTCTTTTCAACTCTAAAACATCTGCTACAGCTACTGTCTGAAAACTAAACAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29269</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>91773</contig_pos>
        <strand>+</strand>
        <context>CAAACTCTTT[C/T]CAACTCTAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAACATGTCTCAACTTACCGATTTTCCTTCGGTGCCTTTCAAACTCTTT</left_flank>
        <right_flank>CAACTCTAAAACATCTGCTACAGCTACTGTCTGAAAACTAAACAGAGACA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTTTCCTCGAAATTGGGTGGATTGATTGATTCTCCTTTTATCAAACAGTTTATTAGAAACTCAACAAAAATTAAAACATTTAAAAGATGAGAAAATTTAAATTTGTAGAGAAGATTGCGAAGATAGTGATGATGAAGTTGATGATTTTTGATGAAACTAAGTTTCTTCCTTCTGTTCTCCAGCTTCATTGATCTCGAGCTTGGCTTTGTCTCTCTGGCCTGAAAATAGGAAATAAAACTATCATTTTGAAATATTTTTGAACTTTGTTATTTTCAAAAAACAATGGTCCGTTTTTCACATATTGCTCCCAACTTACATATTTCATTAGAAATATTCCTCGTTGCTGGTCGGAAACTAATTTCTCAATCTTCATTATCCCTCTACGGTCCGACGTCTTTCCTTCTCGTCTCCATAACTGAAACGATTTCCGATATCATTATCAATTGAACATGTCTCAACTTACCGATTTTCCTTCGGTGCCTTTCAAACTCTTTTCAACTCTAAAACATCTGCTACAGCTACTGTCTGAAAACTAAACAGAGACACATTTCATGATTTTCCATCGGAAATGACAAGAGAACACATATAAAAAAACTATAAAACGATAAAAATATGAATTTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAGATGCGCAGATGGTTCAAGAAGGGGCACGGCACCGGCACGGTAGCGGCACGCCATACGCGCGCTAGTGGCACGGTTGAGGTGTTCCAAGGGCACTTTGGACGCCGCACGGTGCCGTTTTGATGCAAATCCTGTGCCCCTCTGTGTTTTAGCGTGCGGAAAATTTGCTGAGCAGGTGTTATTTGATTTCCAGAATAAGACATAACAAACTCAAATTCACATCATGTTCTTTTTAACTTGGCACGTTTAAAAATTTTTCGAAATATCTTTCTTCATGAATTCCGTTATAAATTCTACTTGCCATTCTAATGCCGGTTATTTCGAT</canonical>
            <polymorphic>ATTTTTTTTCCTCGAAATTGGGTGGATTGATTGATTCTCCTTTTATCAAACAGTTTATTAGAAACTCAACAAAAATTAAAACATTTAAAAGATGAGAAAATTTAAATTTGTAGAGAAGATTGCGAAGATAGTGATGATGAAGTTGATGATTTTTGATGAAACTAAGTTTCTTCCTTCTGTTCTCCAGCTTCATTGATCTCGAGCTTGGCTTTGTCTCTCTGGCCTGAAAATAGGAAATAAAACTATCATTTTGAAATATTTTTGAACTTTGTTATTTTCAAAAAACAATGGTCCGTTTTTCACATATTGCTCCCAACTTACATATTTCATTAGAAATATTCCTCGTTGCTGGTCGGAAACTAATTTCTCAATCTTCATTATCCCTCTACGGTCCGACGTCTTTCCTTCTCGTCTCCATAACTGAAACGATTTCCGATATCATTATCAATTGAACATGTCTCAACTTACCGATTTTCCTTCGGTGCCTTTCAAACTCTTTYCAACTCTAAAACATCTGCTACAGCTACTGTCTGAAAACTAAACAGAGACACATTTCATGATTTTCCATCGGAAATGACAAGAGAACACATATAAAAAAACTATAAAACGATAAAAATATGAATTTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAGATGCGCAGATGGTTCAAGAAGGGGCACGGCACCGGCACGGTAGCGGCACGCCATACGCGCGCTAGTGGCACGGTTGAGGTGTTCCAAGGGCACTTTGGACGCCGCACGGTGCCGTTTTGATGCAAATCCTGTGCCCCTCTGTGTTTTAGCGTGCGGAAAATTTGCTGAGCAGGTGTTATTTGATTTCCAGAATAAGACATAACAAACTCAAATTCACATCATGTTCTTTTTAACTTGGCACGTTTAAAAATTTTTCGAAATATCTTTCTTCATGAATTCCGTTATAAATTCTACTTGCCATTCTAATGCCGGTTATTTCGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATTTCCGATATCATTATCA</pcr_primer_p1>
		<pcr_primer_p2>CTCGTGTCTATTCATTGAGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGATTTCCGATATCATTATCAATTGAACATGTCTCAACTTACCGATTTTCCTTCGGTGCCTTTCAAACTCTTTTCAACTCTAAAACATCTGCTACAGCTACTGTCTGAAAACTAAACAGAGACACATTTCATGATTTTCCATCGGAAATGACAAGAGAACACATATAAAAAAACTATAAAACGATAAAAATATGAATTTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAG</canonical_amplicon>
		<polymorphic_amplicon>CGATTTCCGATATCATTATCAATTGAACATGTCTCAACTTACCGATTTTCCTTCGGTGCCTTTCAAACTCTTTYCAACTCTAAAACATCTGCTACAGCTACTGTCTGAAAACTAAACAGAGACACATTTCATGATTTTCCATCGGAAATGACAAGAGAACACATATAAAAAAACTATAAAACGATAAAAATATGAATTTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29270</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>91822</contig_pos>
        <strand>+</strand>
        <context>TAAACAGAGA[C/T]ACATTTCATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAACTCTAAAACATCTGCTACAGCTACTGTCTGAAAACTAAACAGAGA</left_flank>
        <right_flank>ACATTTCATGATTTTCCATCGGAAATGACAAGAGAACACATATAAAAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGTTTATTAGAAACTCAACAAAAATTAAAACATTTAAAAGATGAGAAAATTTAAATTTGTAGAGAAGATTGCGAAGATAGTGATGATGAAGTTGATGATTTTTGATGAAACTAAGTTTCTTCCTTCTGTTCTCCAGCTTCATTGATCTCGAGCTTGGCTTTGTCTCTCTGGCCTGAAAATAGGAAATAAAACTATCATTTTGAAATATTTTTGAACTTTGTTATTTTCAAAAAACAATGGTCCGTTTTTCACATATTGCTCCCAACTTACATATTTCATTAGAAATATTCCTCGTTGCTGGTCGGAAACTAATTTCTCAATCTTCATTATCCCTCTACGGTCCGACGTCTTTCCTTCTCGTCTCCATAACTGAAACGATTTCCGATATCATTATCAATTGAACATGTCTCAACTTACCGATTTTCCTTCGGTGCCTTTCAAACTCTTTTCAACTCTAAAACATCTGCTACAGCTACTGTCTGAAAACTAAACAGAGACACATTTCATGATTTTCCATCGGAAATGACAAGAGAACACATATAAAAAAACTATAAAACGATAAAAATATGAATTTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAGATGCGCAGATGGTTCAAGAAGGGGCACGGCACCGGCACGGTAGCGGCACGCCATACGCGCGCTAGTGGCACGGTTGAGGTGTTCCAAGGGCACTTTGGACGCCGCACGGTGCCGTTTTGATGCAAATCCTGTGCCCCTCTGTGTTTTAGCGTGCGGAAAATTTGCTGAGCAGGTGTTATTTGATTTCCAGAATAAGACATAACAAACTCAAATTCACATCATGTTCTTTTTAACTTGGCACGTTTAAAAATTTTTCGAAATATCTTTCTTCATGAATTCCGTTATAAATTCTACTTGCCATTCTAATGCCGGTTATTTCGATTCTCCCGAGTGTTTATCAATGGCTCTCCATATAAACACAATTATTTCTA</canonical>
            <polymorphic>ACAGTTTATTAGAAACTCAACAAAAATTAAAACATTTAAAAGATGAGAAAATTTAAATTTGTAGAGAAGATTGCGAAGATAGTGATGATGAAGTTGATGATTTTTGATGAAACTAAGTTTCTTCCTTCTGTTCTCCAGCTTCATTGATCTCGAGCTTGGCTTTGTCTCTCTGGCCTGAAAATAGGAAATAAAACTATCATTTTGAAATATTTTTGAACTTTGTTATTTTCAAAAAACAATGGTCCGTTTTTCACATATTGCTCCCAACTTACATATTTCATTAGAAATATTCCTCGTTGCTGGTCGGAAACTAATTTCTCAATCTTCATTATCCCTCTACGGTCCGACGTCTTTCCTTCTCGTCTCCATAACTGAAACGATTTCCGATATCATTATCAATTGAACATGTCTCAACTTACCGATTTTCCTTCGGTGCCTTTCAAACTCTTTTCAACTCTAAAACATCTGCTACAGCTACTGTCTGAAAACTAAACAGAGAYACATTTCATGATTTTCCATCGGAAATGACAAGAGAACACATATAAAAAAACTATAAAACGATAAAAATATGAATTTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAGATGCGCAGATGGTTCAAGAAGGGGCACGGCACCGGCACGGTAGCGGCACGCCATACGCGCGCTAGTGGCACGGTTGAGGTGTTCCAAGGGCACTTTGGACGCCGCACGGTGCCGTTTTGATGCAAATCCTGTGCCCCTCTGTGTTTTAGCGTGCGGAAAATTTGCTGAGCAGGTGTTATTTGATTTCCAGAATAAGACATAACAAACTCAAATTCACATCATGTTCTTTTTAACTTGGCACGTTTAAAAATTTTTCGAAATATCTTTCTTCATGAATTCCGTTATAAATTCTACTTGCCATTCTAATGCCGGTTATTTCGATTCTCCCGAGTGTTTATCAATGGCTCTCCATATAAACACAATTATTTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>182 169 93 87 84 66 41 37 30 26 24 22 22 19 14 12 11 11 11 10 10 6 5 5 3</canonical_bands>
                <polymorphic_bands>182 169 103 93 87 84 41 30 26 24 22 22 19 14 12 11 11 11 10 10 6 5 5 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATTTCCGATATCATTATCA</pcr_primer_p1>
		<pcr_primer_p2>CTCGTGTCTATTCATTGAGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGATTTCCGATATCATTATCAATTGAACATGTCTCAACTTACCGATTTTCCTTCGGTGCCTTTCAAACTCTTTTCAACTCTAAAACATCTGCTACAGCTACTGTCTGAAAACTAAACAGAGACACATTTCATGATTTTCCATCGGAAATGACAAGAGAACACATATAAAAAAACTATAAAACGATAAAAATATGAATTTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAG</canonical_amplicon>
		<polymorphic_amplicon>CGATTTCCGATATCATTATCAATTGAACATGTCTCAACTTACCGATTTTCCTTCGGTGCCTTTCAAACTCTTTTCAACTCTAAAACATCTGCTACAGCTACTGTCTGAAAACTAAACAGAGAYACATTTCATGATTTTCCATCGGAAATGACAAGAGAACACATATAAAAAAACTATAAAACGATAAAAATATGAATTTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29271</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>91841</contig_pos>
        <strand>+</strand>
        <context>TGATTTTCCA[A/T]CGGAAAWGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTACAGCTACTGTCTGAAAACTAAACAGAGACACATTTCATGATTTTCCA</left_flank>
        <right_flank>CGGAAATGACAAGAGAACACATATAAAAAAACTATAAAACGATAAAAATA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAAAAATTAAAACATTTAAAAGATGAGAAAATTTAAATTTGTAGAGAAGATTGCGAAGATAGTGATGATGAAGTTGATGATTTTTGATGAAACTAAGTTTCTTCCTTCTGTTCTCCAGCTTCATTGATCTCGAGCTTGGCTTTGTCTCTCTGGCCTGAAAATAGGAAATAAAACTATCATTTTGAAATATTTTTGAACTTTGTTATTTTCAAAAAACAATGGTCCGTTTTTCACATATTGCTCCCAACTTACATATTTCATTAGAAATATTCCTCGTTGCTGGTCGGAAACTAATTTCTCAATCTTCATTATCCCTCTACGGTCCGACGTCTTTCCTTCTCGTCTCCATAACTGAAACGATTTCCGATATCATTATCAATTGAACATGTCTCAACTTACCGATTTTCCTTCGGTGCCTTTCAAACTCTTTTCAACTCTAAAACATCTGCTACAGCTACTGTCTGAAAACTAAACAGAGACACATTTCATGATTTTCCATCGGAAATGACAAGAGAACACATATAAAAAAACTATAAAACGATAAAAATATGAATTTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAGATGCGCAGATGGTTCAAGAAGGGGCACGGCACCGGCACGGTAGCGGCACGCCATACGCGCGCTAGTGGCACGGTTGAGGTGTTCCAAGGGCACTTTGGACGCCGCACGGTGCCGTTTTGATGCAAATCCTGTGCCCCTCTGTGTTTTAGCGTGCGGAAAATTTGCTGAGCAGGTGTTATTTGATTTCCAGAATAAGACATAACAAACTCAAATTCACATCATGTTCTTTTTAACTTGGCACGTTTAAAAATTTTTCGAAATATCTTTCTTCATGAATTCCGTTATAAATTCTACTTGCCATTCTAATGCCGGTTATTTCGATTCTCCCGAGTGTTTATCAATGGCTCTCCATATAAACACAATTATTTCTACACCGATTCATTTATTCGG</canonical>
            <polymorphic>ACAAAAATTAAAACATTTAAAAGATGAGAAAATTTAAATTTGTAGAGAAGATTGCGAAGATAGTGATGATGAAGTTGATGATTTTTGATGAAACTAAGTTTCTTCCTTCTGTTCTCCAGCTTCATTGATCTCGAGCTTGGCTTTGTCTCTCTGGCCTGAAAATAGGAAATAAAACTATCATTTTGAAATATTTTTGAACTTTGTTATTTTCAAAAAACAATGGTCCGTTTTTCACATATTGCTCCCAACTTACATATTTCATTAGAAATATTCCTCGTTGCTGGTCGGAAACTAATTTCTCAATCTTCATTATCCCTCTACGGTCCGACGTCTTTCCTTCTCGTCTCCATAACTGAAACGATTTCCGATATCATTATCAATTGAACATGTCTCAACTTACCGATTTTCCTTCGGTGCCTTTCAAACTCTTTTCAACTCTAAAACATCTGCTACAGCTACTGTCTGAAAACTAAACAGAGACACATTTCATGATTTTCCAWCGGAAATGACAAGAGAACACATATAAAAAAACTATAAAACGATAAAAATATGAATTTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAGATGCGCAGATGGTTCAAGAAGGGGCACGGCACCGGCACGGTAGCGGCACGCCATACGCGCGCTAGTGGCACGGTTGAGGTGTTCCAAGGGCACTTTGGACGCCGCACGGTGCCGTTTTGATGCAAATCCTGTGCCCCTCTGTGTTTTAGCGTGCGGAAAATTTGCTGAGCAGGTGTTATTTGATTTCCAGAATAAGACATAACAAACTCAAATTCACATCATGTTCTTTTTAACTTGGCACGTTTAAAAATTTTTCGAAATATCTTTCTTCATGAATTCCGTTATAAATTCTACTTGCCATTCTAATGCCGGTTATTTCGATTCTCCCGAGTGTTTATCAATGGCTCTCCATATAAACACAATTATTTCTACACCGATTCATTTATTCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>498 287 98 40 39 38</canonical_bands>
                <polymorphic_bands>536 287 98 40 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATTTCCGATATCATTATCA</pcr_primer_p1>
		<pcr_primer_p2>CTCGTGTCTATTCATTGAGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGATTTCCGATATCATTATCAATTGAACATGTCTCAACTTACCGATTTTCCTTCGGTGCCTTTCAAACTCTTTTCAACTCTAAAACATCTGCTACAGCTACTGTCTGAAAACTAAACAGAGACACATTTCATGATTTTCCATCGGAAATGACAAGAGAACACATATAAAAAAACTATAAAACGATAAAAATATGAATTTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAG</canonical_amplicon>
		<polymorphic_amplicon>CGATTTCCGATATCATTATCAATTGAACATGTCTCAACTTACCGATTTTCCTTCGGTGCCTTTCAAACTCTTTTCAACTCTAAAACATCTGCTACAGCTACTGTCTGAAAACTAAACAGAGACACATTTCATGATTTTCCAWCGGAAATGACAAGAGAACACATATAAAAAAACTATAAAACGATAAAAATATGAATTTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29272</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>91848</contig_pos>
        <strand>+</strand>
        <context>CCAWCGGAAA[A/T]GACAAGAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TACTGTCTGAAAACTAAACAGAGACACATTTCATGATTTTCCATCGGAAA</left_flank>
        <right_flank>GACAAGAGAACACATATAAAAAAACTATAAAACGATAAAAATATGAATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAACATTTAAAAGATGAGAAAATTTAAATTTGTAGAGAAGATTGCGAAGATAGTGATGATGAAGTTGATGATTTTTGATGAAACTAAGTTTCTTCCTTCTGTTCTCCAGCTTCATTGATCTCGAGCTTGGCTTTGTCTCTCTGGCCTGAAAATAGGAAATAAAACTATCATTTTGAAATATTTTTGAACTTTGTTATTTTCAAAAAACAATGGTCCGTTTTTCACATATTGCTCCCAACTTACATATTTCATTAGAAATATTCCTCGTTGCTGGTCGGAAACTAATTTCTCAATCTTCATTATCCCTCTACGGTCCGACGTCTTTCCTTCTCGTCTCCATAACTGAAACGATTTCCGATATCATTATCAATTGAACATGTCTCAACTTACCGATTTTCCTTCGGTGCCTTTCAAACTCTTTTCAACTCTAAAACATCTGCTACAGCTACTGTCTGAAAACTAAACAGAGACACATTTCATGATTTTCCATCGGAAATGACAAGAGAACACATATAAAAAAACTATAAAACGATAAAAATATGAATTTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAGATGCGCAGATGGTTCAAGAAGGGGCACGGCACCGGCACGGTAGCGGCACGCCATACGCGCGCTAGTGGCACGGTTGAGGTGTTCCAAGGGCACTTTGGACGCCGCACGGTGCCGTTTTGATGCAAATCCTGTGCCCCTCTGTGTTTTAGCGTGCGGAAAATTTGCTGAGCAGGTGTTATTTGATTTCCAGAATAAGACATAACAAACTCAAATTCACATCATGTTCTTTTTAACTTGGCACGTTTAAAAATTTTTCGAAATATCTTTCTTCATGAATTCCGTTATAAATTCTACTTGCCATTCTAATGCCGGTTATTTCGATTCTCCCGAGTGTTTATCAATGGCTCTCCATATAAACACAATTATTTCTACACCGATTCATTTATTCGGTTTCTAT</canonical>
            <polymorphic>TTAAAACATTTAAAAGATGAGAAAATTTAAATTTGTAGAGAAGATTGCGAAGATAGTGATGATGAAGTTGATGATTTTTGATGAAACTAAGTTTCTTCCTTCTGTTCTCCAGCTTCATTGATCTCGAGCTTGGCTTTGTCTCTCTGGCCTGAAAATAGGAAATAAAACTATCATTTTGAAATATTTTTGAACTTTGTTATTTTCAAAAAACAATGGTCCGTTTTTCACATATTGCTCCCAACTTACATATTTCATTAGAAATATTCCTCGTTGCTGGTCGGAAACTAATTTCTCAATCTTCATTATCCCTCTACGGTCCGACGTCTTTCCTTCTCGTCTCCATAACTGAAACGATTTCCGATATCATTATCAATTGAACATGTCTCAACTTACCGATTTTCCTTCGGTGCCTTTCAAACTCTTTTCAACTCTAAAACATCTGCTACAGCTACTGTCTGAAAACTAAACAGAGACACATTTCATGATTTTCCATCGGAAAWGACAAGAGAACACATATAAAAAAACTATAAAACGATAAAAATATGAATTTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAGATGCGCAGATGGTTCAAGAAGGGGCACGGCACCGGCACGGTAGCGGCACGCCATACGCGCGCTAGTGGCACGGTTGAGGTGTTCCAAGGGCACTTTGGACGCCGCACGGTGCCGTTTTGATGCAAATCCTGTGCCCCTCTGTGTTTTAGCGTGCGGAAAATTTGCTGAGCAGGTGTTATTTGATTTCCAGAATAAGACATAACAAACTCAAATTCACATCATGTTCTTTTTAACTTGGCACGTTTAAAAATTTTTCGAAATATCTTTCTTCATGAATTCCGTTATAAATTCTACTTGCCATTCTAATGCCGGTTATTTCGATTCTCCCGAGTGTTTATCAATGGCTCTCCATATAAACACAATTATTTCTACACCGATTCATTTATTCGGTTTCTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATTTCCGATATCATTATCA</pcr_primer_p1>
		<pcr_primer_p2>CTCGTGTCTATTCATTGAGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGATTTCCGATATCATTATCAATTGAACATGTCTCAACTTACCGATTTTCCTTCGGTGCCTTTCAAACTCTTTTCAACTCTAAAACATCTGCTACAGCTACTGTCTGAAAACTAAACAGAGACACATTTCATGATTTTCCATCGGAAATGACAAGAGAACACATATAAAAAAACTATAAAACGATAAAAATATGAATTTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAG</canonical_amplicon>
		<polymorphic_amplicon>CGATTTCCGATATCATTATCAATTGAACATGTCTCAACTTACCGATTTTCCTTCGGTGCCTTTCAAACTCTTTTCAACTCTAAAACATCTGCTACAGCTACTGTCTGAAAACTAAACAGAGACACATTTCATGATTTTCCATCGGAAAWGACAAGAGAACACATATAAAAAAACTATAAAACGATAAAAATATGAATTTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29273</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>91973</contig_pos>
        <strand>+</strand>
        <context>GTTCAAGAAG[A/G]GGCACGGCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTCGAAACTCAATGAATAGACACGAGATGCGCAGATGGTTCAAGAAG</left_flank>
        <right_flank>GGCACGGCACCGGCACGGTAGCGGCACGCCATACGCGCGCTAGTGGCACG</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGCTTGGCTTTGTCTCTCTGGCCTGAAAATAGGAAATAAAACTATCATTTTGAAATATTTTTGAACTTTGTTATTTTCAAAAAACAATGGTCCGTTTTTCACATATTGCTCCCAACTTACATATTTCATTAGAAATATTCCTCGTTGCTGGTCGGAAACTAATTTCTCAATCTTCATTATCCCTCTACGGTCCGACGTCTTTCCTTCTCGTCTCCATAACTGAAACGATTTCCGATATCATTATCAATTGAACATGTCTCAACTTACCGATTTTCCTTCGGTGCCTTTCAAACTCTTTTCAACTCTAAAACATCTGCTACAGCTACTGTCTGAAAACTAAACAGAGACACATTTCATGATTTTCCATCGGAAATGACAAGAGAACACATATAAAAAAACTATAAAACGATAAAAATATGAATTTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAGATGCGCAGATGGTTCAAGAAGGGGCACGGCACCGGCACGGTAGCGGCACGCCATACGCGCGCTAGTGGCACGGTTGAGGTGTTCCAAGGGCACTTTGGACGCCGCACGGTGCCGTTTTGATGCAAATCCTGTGCCCCTCTGTGTTTTAGCGTGCGGAAAATTTGCTGAGCAGGTGTTATTTGATTTCCAGAATAAGACATAACAAACTCAAATTCACATCATGTTCTTTTTAACTTGGCACGTTTAAAAATTTTTCGAAATATCTTTCTTCATGAATTCCGTTATAAATTCTACTTGCCATTCTAATGCCGGTTATTTCGATTCTCCCGAGTGTTTATCAATGGCTCTCCATATAAACACAATTATTTCTACACCGATTCATTTATTCGGTTTCTATTGTATCCTTTGGAAAACTCCAGAGTCTATGAAGTCAGCAAAGTGGTACATATTAATTTTACACATTTGGGTTGTAGCTTTTGATTATTCCATCAGTATTCTAACAATTCCGTTTGTTTTGATACC</canonical>
            <polymorphic>GAGCTTGGCTTTGTCTCTCTGGCCTGAAAATAGGAAATAAAACTATCATTTTGAAATATTTTTGAACTTTGTTATTTTCAAAAAACAATGGTCCGTTTTTCACATATTGCTCCCAACTTACATATTTCATTAGAAATATTCCTCGTTGCTGGTCGGAAACTAATTTCTCAATCTTCATTATCCCTCTACGGTCCGACGTCTTTCCTTCTCGTCTCCATAACTGAAACGATTTCCGATATCATTATCAATTGAACATGTCTCAACTTACCGATTTTCCTTCGGTGCCTTTCAAACTCTTTTCAACTCTAAAACATCTGCTACAGCTACTGTCTGAAAACTAAACAGAGACACATTTCATGATTTTCCATCGGAAATGACAAGAGAACACATATAAAAAAACTATAAAACGATAAAAATATGAATTTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAGATGCGCAGATGGTTCAAGAAGRGGCACGGCACCGGCACGGTAGCGGCACGCCATACGCGCGCTAGTGGCACGGTTGAGGTGTTCCAAGGGCACTTTGGACGCCGCACGGTGCCGTTTTGATGCAAATCCTGTGCCCCTCTGTGTTTTAGCGTGCGGAAAATTTGCTGAGCAGGTGTTATTTGATTTCCAGAATAAGACATAACAAACTCAAATTCACATCATGTTCTTTTTAACTTGGCACGTTTAAAAATTTTTCGAAATATCTTTCTTCATGAATTCCGTTATAAATTCTACTTGCCATTCTAATGCCGGTTATTTCGATTCTCCCGAGTGTTTATCAATGGCTCTCCATATAAACACAATTATTTCTACACCGATTCATTTATTCGGTTTCTATTGTATCCTTTGGAAAACTCCAGAGTCTATGAAGTCAGCAAAGTGGTACATATTAATTTTACACATTTGGGTTGTAGCTTTTGATTATTCCATCAGTATTCTAACAATTCCGTTTGTTTTGATACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>504 387 66 43</canonical_bands>
                <polymorphic_bands>570 387 43</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>504 387 66 43</canonical_bands>
                <polymorphic_bands>570 387 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATGAAAATAAAACGGAAGCTA</pcr_primer_p1>
		<pcr_primer_p2>TATTCTGGAAATCAAATAACACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAGATGCGCAGATGGTTCAAGAAGGGGCACGGCACCGGCACGGTAGCGGCACGCCATACGCGCGCTAGTGGCACGGTTGAGGTGTTCCAAGGGCACTTTGGACGCCGCACGGTGCCGTTTTGATGCAAATCCTGTGCCCCTCTGTGTTTTAGCGTGCGGAAAATTTGCTGAGCAGGTGTTATTTGATTTCCAGAATA</canonical_amplicon>
		<polymorphic_amplicon>TTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAGATGCGCAGATGGTTCAAGAAGRGGCACGGCACCGGCACGGTAGCGGCACGCCATACGCGCGCTAGTGGCACGGTTGAGGTGTTCCAAGGGCACTTTGGACGCCGCACGGTGCCGTTTTGATGCAAATCCTGTGCCCCTCTGTGTTTTAGCGTGCGGAAAATTTGCTGAGCAGGTGTTATTTGATTTCCAGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29274</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>92007</contig_pos>
        <strand>+</strand>
        <context>GCACGCCATA[C/G]GCGCRCTAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAGATGGTTCAAGAAGGGGCACGGCACCGGCACGGTAGCGGCACGCCATA</left_flank>
        <right_flank>GCGCGCTAGTGGCACGGTTGAGGTGTTCCAAGGGCACTTTGGACGCCGCA</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATAAAACTATCATTTTGAAATATTTTTGAACTTTGTTATTTTCAAAAAACAATGGTCCGTTTTTCACATATTGCTCCCAACTTACATATTTCATTAGAAATATTCCTCGTTGCTGGTCGGAAACTAATTTCTCAATCTTCATTATCCCTCTACGGTCCGACGTCTTTCCTTCTCGTCTCCATAACTGAAACGATTTCCGATATCATTATCAATTGAACATGTCTCAACTTACCGATTTTCCTTCGGTGCCTTTCAAACTCTTTTCAACTCTAAAACATCTGCTACAGCTACTGTCTGAAAACTAAACAGAGACACATTTCATGATTTTCCATCGGAAATGACAAGAGAACACATATAAAAAAACTATAAAACGATAAAAATATGAATTTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAGATGCGCAGATGGTTCAAGAAGGGGCACGGCACCGGCACGGTAGCGGCACGCCATACGCGCGCTAGTGGCACGGTTGAGGTGTTCCAAGGGCACTTTGGACGCCGCACGGTGCCGTTTTGATGCAAATCCTGTGCCCCTCTGTGTTTTAGCGTGCGGAAAATTTGCTGAGCAGGTGTTATTTGATTTCCAGAATAAGACATAACAAACTCAAATTCACATCATGTTCTTTTTAACTTGGCACGTTTAAAAATTTTTCGAAATATCTTTCTTCATGAATTCCGTTATAAATTCTACTTGCCATTCTAATGCCGGTTATTTCGATTCTCCCGAGTGTTTATCAATGGCTCTCCATATAAACACAATTATTTCTACACCGATTCATTTATTCGGTTTCTATTGTATCCTTTGGAAAACTCCAGAGTCTATGAAGTCAGCAAAGTGGTACATATTAATTTTACACATTTGGGTTGTAGCTTTTGATTATTCCATCAGTATTCTAACAATTCCGTTTGTTTTGATACCAGCCATGGCAGGATTCCCACTCGGAGTTTTACGA</canonical>
            <polymorphic>AAATAAAACTATCATTTTGAAATATTTTTGAACTTTGTTATTTTCAAAAAACAATGGTCCGTTTTTCACATATTGCTCCCAACTTACATATTTCATTAGAAATATTCCTCGTTGCTGGTCGGAAACTAATTTCTCAATCTTCATTATCCCTCTACGGTCCGACGTCTTTCCTTCTCGTCTCCATAACTGAAACGATTTCCGATATCATTATCAATTGAACATGTCTCAACTTACCGATTTTCCTTCGGTGCCTTTCAAACTCTTTTCAACTCTAAAACATCTGCTACAGCTACTGTCTGAAAACTAAACAGAGACACATTTCATGATTTTCCATCGGAAATGACAAGAGAACACATATAAAAAAACTATAAAACGATAAAAATATGAATTTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAGATGCGCAGATGGTTCAAGAAGGGGCACGGCACCGGCACGGTAGCGGCACGCCATASGCGCGCTAGTGGCACGGTTGAGGTGTTCCAAGGGCACTTTGGACGCCGCACGGTGCCGTTTTGATGCAAATCCTGTGCCCCTCTGTGTTTTAGCGTGCGGAAAATTTGCTGAGCAGGTGTTATTTGATTTCCAGAATAAGACATAACAAACTCAAATTCACATCATGTTCTTTTTAACTTGGCACGTTTAAAAATTTTTCGAAATATCTTTCTTCATGAATTCCGTTATAAATTCTACTTGCCATTCTAATGCCGGTTATTTCGATTCTCCCGAGTGTTTATCAATGGCTCTCCATATAAACACAATTATTTCTACACCGATTCATTTATTCGGTTTCTATTGTATCCTTTGGAAAACTCCAGAGTCTATGAAGTCAGCAAAGTGGTACATATTAATTTTACACATTTGGGTTGTAGCTTTTGATTATTCCATCAGTATTCTAACAATTCCGTTTGTTTTGATACCAGCCATGGCAGGATTCCCACTCGGAGTTTTACGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 497 2</canonical_bands>
                <polymorphic_bands>503 497</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATGAAAATAAAACGGAAGCTA</pcr_primer_p1>
		<pcr_primer_p2>TATTCTGGAAATCAAATAACACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAGATGCGCAGATGGTTCAAGAAGGGGCACGGCACCGGCACGGTAGCGGCACGCCATACGCGCGCTAGTGGCACGGTTGAGGTGTTCCAAGGGCACTTTGGACGCCGCACGGTGCCGTTTTGATGCAAATCCTGTGCCCCTCTGTGTTTTAGCGTGCGGAAAATTTGCTGAGCAGGTGTTATTTGATTTCCAGAATA</canonical_amplicon>
		<polymorphic_amplicon>TTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAGATGCGCAGATGGTTCAAGAAGGGGCACGGCACCGGCACGGTAGCGGCACGCCATASGCGCGCTAGTGGCACGGTTGAGGTGTTCCAAGGGCACTTTGGACGCCGCACGGTGCCGTTTTGATGCAAATCCTGTGCCCCTCTGTGTTTTAGCGTGCGGAAAATTTGCTGAGCAGGTGTTATTTGATTTCCAGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29275</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>92012</contig_pos>
        <strand>+</strand>
        <context>CCATASGCGC[A/G]CTAGTGGCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTTCAAGAAGGGGCACGGCACCGGCACGGTAGCGGCACGCCATACGCGC</left_flank>
        <right_flank>CTAGTGGCACGGTTGAGGTGTTCCAAGGGCACTTTGGACGCCGCACGGTG</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTATCATTTTGAAATATTTTTGAACTTTGTTATTTTCAAAAAACAATGGTCCGTTTTTCACATATTGCTCCCAACTTACATATTTCATTAGAAATATTCCTCGTTGCTGGTCGGAAACTAATTTCTCAATCTTCATTATCCCTCTACGGTCCGACGTCTTTCCTTCTCGTCTCCATAACTGAAACGATTTCCGATATCATTATCAATTGAACATGTCTCAACTTACCGATTTTCCTTCGGTGCCTTTCAAACTCTTTTCAACTCTAAAACATCTGCTACAGCTACTGTCTGAAAACTAAACAGAGACACATTTCATGATTTTCCATCGGAAATGACAAGAGAACACATATAAAAAAACTATAAAACGATAAAAATATGAATTTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAGATGCGCAGATGGTTCAAGAAGGGGCACGGCACCGGCACGGTAGCGGCACGCCATACGCGCGCTAGTGGCACGGTTGAGGTGTTCCAAGGGCACTTTGGACGCCGCACGGTGCCGTTTTGATGCAAATCCTGTGCCCCTCTGTGTTTTAGCGTGCGGAAAATTTGCTGAGCAGGTGTTATTTGATTTCCAGAATAAGACATAACAAACTCAAATTCACATCATGTTCTTTTTAACTTGGCACGTTTAAAAATTTTTCGAAATATCTTTCTTCATGAATTCCGTTATAAATTCTACTTGCCATTCTAATGCCGGTTATTTCGATTCTCCCGAGTGTTTATCAATGGCTCTCCATATAAACACAATTATTTCTACACCGATTCATTTATTCGGTTTCTATTGTATCCTTTGGAAAACTCCAGAGTCTATGAAGTCAGCAAAGTGGTACATATTAATTTTACACATTTGGGTTGTAGCTTTTGATTATTCCATCAGTATTCTAACAATTCCGTTTGTTTTGATACCAGCCATGGCAGGATTCCCACTCGGAGTTTTACGATACCT</canonical>
            <polymorphic>AAACTATCATTTTGAAATATTTTTGAACTTTGTTATTTTCAAAAAACAATGGTCCGTTTTTCACATATTGCTCCCAACTTACATATTTCATTAGAAATATTCCTCGTTGCTGGTCGGAAACTAATTTCTCAATCTTCATTATCCCTCTACGGTCCGACGTCTTTCCTTCTCGTCTCCATAACTGAAACGATTTCCGATATCATTATCAATTGAACATGTCTCAACTTACCGATTTTCCTTCGGTGCCTTTCAAACTCTTTTCAACTCTAAAACATCTGCTACAGCTACTGTCTGAAAACTAAACAGAGACACATTTCATGATTTTCCATCGGAAATGACAAGAGAACACATATAAAAAAACTATAAAACGATAAAAATATGAATTTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAGATGCGCAGATGGTTCAAGAAGGGGCACGGCACCGGCACGGTAGCGGCACGCCATACGCGCRCTAGTGGCACGGTTGAGGTGTTCCAAGGGCACTTTGGACGCCGCACGGTGCCGTTTTGATGCAAATCCTGTGCCCCTCTGTGTTTTAGCGTGCGGAAAATTTGCTGAGCAGGTGTTATTTGATTTCCAGAATAAGACATAACAAACTCAAATTCACATCATGTTCTTTTTAACTTGGCACGTTTAAAAATTTTTCGAAATATCTTTCTTCATGAATTCCGTTATAAATTCTACTTGCCATTCTAATGCCGGTTATTTCGATTCTCCCGAGTGTTTATCAATGGCTCTCCATATAAACACAATTATTTCTACACCGATTCATTTATTCGGTTTCTATTGTATCCTTTGGAAAACTCCAGAGTCTATGAAGTCAGCAAAGTGGTACATATTAATTTTACACATTTGGGTTGTAGCTTTTGATTATTCCATCAGTATTCTAACAATTCCGTTTGTTTTGATACCAGCCATGGCAGGATTCCCACTCGGAGTTTTACGATACCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 496 2</canonical_bands>
                <polymorphic_bands>504 496</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 444 54 2</canonical_bands>
                <polymorphic_bands>502 444 54</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGCGC</site>
                <isoschizomers>
                    <enzyme>BsePI</enzyme>
                    <enzyme>BssHII</enzyme>
                    <enzyme>PauI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>487 410 92 11</canonical_bands>
                <polymorphic_bands>487 410 103</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATGAAAATAAAACGGAAGCTA</pcr_primer_p1>
		<pcr_primer_p2>TATTCTGGAAATCAAATAACACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAGATGCGCAGATGGTTCAAGAAGGGGCACGGCACCGGCACGGTAGCGGCACGCCATACGCGCGCTAGTGGCACGGTTGAGGTGTTCCAAGGGCACTTTGGACGCCGCACGGTGCCGTTTTGATGCAAATCCTGTGCCCCTCTGTGTTTTAGCGTGCGGAAAATTTGCTGAGCAGGTGTTATTTGATTTCCAGAATA</canonical_amplicon>
		<polymorphic_amplicon>TTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAGATGCGCAGATGGTTCAAGAAGGGGCACGGCACCGGCACGGTAGCGGCACGCCATACGCGCRCTAGTGGCACGGTTGAGGTGTTCCAAGGGCACTTTGGACGCCGCACGGTGCCGTTTTGATGCAAATCCTGTGCCCCTCTGTGTTTTAGCGTGCGGAAAATTTGCTGAGCAGGTGTTATTTGATTTCCAGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29276</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>92044</contig_pos>
        <strand>+</strand>
        <context>TCCAAGGGCA[C/T]TTTGGACGCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCGGCACGCCATACGCGCGCTAGTGGCACGGTTGAGGTGTTCCAAGGGCA</left_flank>
        <right_flank>TTTGGACGCCGCACGGTGCCGTTTTGATGCAAATCCTGTGCCCCTCTGTG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATTTTCAAAAAACAATGGTCCGTTTTTCACATATTGCTCCCAACTTACATATTTCATTAGAAATATTCCTCGTTGCTGGTCGGAAACTAATTTCTCAATCTTCATTATCCCTCTACGGTCCGACGTCTTTCCTTCTCGTCTCCATAACTGAAACGATTTCCGATATCATTATCAATTGAACATGTCTCAACTTACCGATTTTCCTTCGGTGCCTTTCAAACTCTTTTCAACTCTAAAACATCTGCTACAGCTACTGTCTGAAAACTAAACAGAGACACATTTCATGATTTTCCATCGGAAATGACAAGAGAACACATATAAAAAAACTATAAAACGATAAAAATATGAATTTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAGATGCGCAGATGGTTCAAGAAGGGGCACGGCACCGGCACGGTAGCGGCACGCCATACGCGCGCTAGTGGCACGGTTGAGGTGTTCCAAGGGCACTTTGGACGCCGCACGGTGCCGTTTTGATGCAAATCCTGTGCCCCTCTGTGTTTTAGCGTGCGGAAAATTTGCTGAGCAGGTGTTATTTGATTTCCAGAATAAGACATAACAAACTCAAATTCACATCATGTTCTTTTTAACTTGGCACGTTTAAAAATTTTTCGAAATATCTTTCTTCATGAATTCCGTTATAAATTCTACTTGCCATTCTAATGCCGGTTATTTCGATTCTCCCGAGTGTTTATCAATGGCTCTCCATATAAACACAATTATTTCTACACCGATTCATTTATTCGGTTTCTATTGTATCCTTTGGAAAACTCCAGAGTCTATGAAGTCAGCAAAGTGGTACATATTAATTTTACACATTTGGGTTGTAGCTTTTGATTATTCCATCAGTATTCTAACAATTCCGTTTGTTTTGATACCAGCCATGGCAGGATTCCCACTCGGAGTTTTACGATACCTTGGTTTTTCTACAATCAACCAAATTATACTGG</canonical>
            <polymorphic>TTATTTTCAAAAAACAATGGTCCGTTTTTCACATATTGCTCCCAACTTACATATTTCATTAGAAATATTCCTCGTTGCTGGTCGGAAACTAATTTCTCAATCTTCATTATCCCTCTACGGTCCGACGTCTTTCCTTCTCGTCTCCATAACTGAAACGATTTCCGATATCATTATCAATTGAACATGTCTCAACTTACCGATTTTCCTTCGGTGCCTTTCAAACTCTTTTCAACTCTAAAACATCTGCTACAGCTACTGTCTGAAAACTAAACAGAGACACATTTCATGATTTTCCATCGGAAATGACAAGAGAACACATATAAAAAAACTATAAAACGATAAAAATATGAATTTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAGATGCGCAGATGGTTCAAGAAGGGGCACGGCACCGGCACGGTAGCGGCACGCCATACGCGCGCTAGTGGCACGGTTGAGGTGTTCCAAGGGCAYTTTGGACGCCGCACGGTGCCGTTTTGATGCAAATCCTGTGCCCCTCTGTGTTTTAGCGTGCGGAAAATTTGCTGAGCAGGTGTTATTTGATTTCCAGAATAAGACATAACAAACTCAAATTCACATCATGTTCTTTTTAACTTGGCACGTTTAAAAATTTTTCGAAATATCTTTCTTCATGAATTCCGTTATAAATTCTACTTGCCATTCTAATGCCGGTTATTTCGATTCTCCCGAGTGTTTATCAATGGCTCTCCATATAAACACAATTATTTCTACACCGATTCATTTATTCGGTTTCTATTGTATCCTTTGGAAAACTCCAGAGTCTATGAAGTCAGCAAAGTGGTACATATTAATTTTACACATTTGGGTTGTAGCTTTTGATTATTCCATCAGTATTCTAACAATTCCGTTTGTTTTGATACCAGCCATGGCAGGATTCCCACTCGGAGTTTTACGATACCTTGGTTTTTCTACAATCAACCAAATTATACTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>458 433 66 43</canonical_bands>
                <polymorphic_bands>458 433 109</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>458 433 66 43</canonical_bands>
                <polymorphic_bands>458 433 109</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>182 93 87 82 68 66 52 41 37 31 30 26 24 22 22 19 18 14 14 11 11 11 10 10 6 5 5 3</canonical_bands>
                <polymorphic_bands>182 93 87 82 68 66 52 41 37 31 30 26 25 24 22 22 19 18 14 11 11 10 10 6 5 5 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATGAAAATAAAACGGAAGCTA</pcr_primer_p1>
		<pcr_primer_p2>TATTCTGGAAATCAAATAACACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAGATGCGCAGATGGTTCAAGAAGGGGCACGGCACCGGCACGGTAGCGGCACGCCATACGCGCGCTAGTGGCACGGTTGAGGTGTTCCAAGGGCACTTTGGACGCCGCACGGTGCCGTTTTGATGCAAATCCTGTGCCCCTCTGTGTTTTAGCGTGCGGAAAATTTGCTGAGCAGGTGTTATTTGATTTCCAGAATA</canonical_amplicon>
		<polymorphic_amplicon>TTATGAAAATAAAACGGAAGCTAGTCATTTTCGAAACTCAATGAATAGACACGAGATGCGCAGATGGTTCAAGAAGGGGCACGGCACCGGCACGGTAGCGGCACGCCATACGCGCGCTAGTGGCACGGTTGAGGTGTTCCAAGGGCAYTTTGGACGCCGCACGGTGCCGTTTTGATGCAAATCCTGTGCCCCTCTGTGTTTTAGCGTGCGGAAAATTTGCTGAGCAGGTGTTATTTGATTTCCAGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29277</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>93495</contig_pos>
        <strand>+</strand>
        <context>TTTGCCTTTC[C/T]TATGATTTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAAGCTCTCGGCCTCCAAGTATCAATTCCTTTATTCATGTTTGCCTTTC</left_flank>
        <right_flank>TATGATTTATATCTTAGTAGCTATTCTTACAAACTATTATAATCAAACAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCGAATCGCGACCGCGGCCGGCCGTGGATAGCTTGCCGTGGACCAGTTAGTCCAATCTCTCAAAAATACGTTCAGATTGCCAGAAACCAATAGGGCAGTCAGGCTACCGTATTCCACCTATTTTAGATGTACCCTAACCAAAAAGCTGCGGCCGGCCGTTGTTCTAAACCAGTGAATCATGAAAACTCAATGTACCCTTTTCGATGTACCCTTCAATATCGGACCCACATTTTCAGACCCTACCCTGTCTCTCGCCAAAAATATACGAGTCTGACTTTTTTGTGTTGACCGAAAACATCACTTATCACTTGCTCATATTCATCGCATTTTTCCTTACCTTCGGTATCAAAGTCATTTCTCTTACATTTGGACTTGTCTGGAATACGCTACACCTATTGAAGAGCCAACGAATGTCCCAAAGAACCTACCATCTTCATATCACATTTTTACAAGCTCTCGGCCTCCAAGTATCAATTCCTTTATTCATGTTTGCCTTTCCTATGATTTATATCTTAGTAGCTATTCTTACAAACTATTATAATCAAACACTAATCAATATCGGAGTAATTGGATTATCCATGCACGGATTCTCTTCTTCTCTGGTTCTGGTTTATGTACACCATCCCTACCGTATGGCGTTTCAAGAGTTGTTTAGACCTTCTCATAACAGCTTTCAAATAGCATCACAACACTCGACTAATTATCGACAGGATAACATTCGAGTTGGTGCCTCAAAATTTTGAATGGGTCATTAAATTTTTGAGGCCGTATGTATCCCTATTGTTCATTTTTACAGTAGCTATTCTTAGAAACGATTATAATCAAACATTAATAAATATGGGAGTCATTGAATAATCCATGCTCGGATTTAGTGAAATTTTTTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGGTGTTTTGCAGTTTTTCAGGTGTTTCAGGTCATTTTTAAAGGTTATTGAAAGTAAGAAAAAAAAGCGCAGACAGACTTGC</canonical>
            <polymorphic>GGCGAATCGCGACCGCGGCCGGCCGTGGATAGCTTGCCGTGGACCAGTTAGTCCAATCTCTCAAAAATACGTTCAGATTGCCAGAAACCAATAGGGCAGTCAGGCTACCGTATTCCACCTATTTTAGATGTACCCTAACCAAAAAGCTGCGGCCGGCCGTTGTTCTAAACCAGTGAATCATGAAAACTCAATGTACCCTTTTCGATGTACCCTTCAATATCGGACCCACATTTTCAGACCCTACCCTGTCTCTCGCCAAAAATATACGAGTCTGACTTTTTTGTGTTGACCGAAAACATCACTTATCACTTGCTCATATTCATCGCATTTTTCCTTACCTTCGGTATCAAAGTCATTTCTCTTACATTTGGACTTGTCTGGAATACGCTACACCTATTGAAGAGCCAACGAATGTCCCAAAGAACCTACCATCTTCATATCACATTTTTACAAGCTCTCGGCCTCCAAGTATCAATTCCTTTATTCATGTTTGCCTTTCYTATGATTTATATCTTAGTAGCTATTCTTACAAACTATTATAATCAAACACTAATCAATATCGGAGTAATTGGATTATCCATGCACGGATTCTCTTCTTCTCTGGTTCTGGTTTATGTACACCATCCCTACCGTATGGCGTTTCAAGAGTTGTTTAGACCTTCTCATAACAGCTTTCAAATAGCATCACAACACTCGACTAATTATCGACAGGATAACATTCGAGTTGGTGCCTCAAAATTTTGAATGGGTCATTAAATTTTTGAGGCCGTATGTATCCCTATTGTTCATTTTTACAGTAGCTATTCTTAGAAACGATTATAATCAAACATTAATAAATATGGGAGTCATTGAATAATCCATGCTCGGATTTAGTGAAATTTTTTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGGTGTTTTGCAGTTTTTCAGGTGTTTCAGGTCATTTTTAAAGGTTATTGAAAGTAAGAAAAAAAAGCGCAGACAGACTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTACCATCTTCATATCACATTT</pcr_primer_p1>
		<pcr_primer_p2>AAGCTGTTATGAGAAGGTCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTACCATCTTCATATCACATTTTTACAAGCTCTCGGCCTCCAAGTATCAATTCCTTTATTCATGTTTGCCTTTCCTATGATTTATATCTTAGTAGCTATTCTTACAAACTATTATAATCAAACACTAATCAATATCGGAGTAATTGGATTATCCATGCACGGATTCTCTTCTTCTCTGGTTCTGGTTTATGTACACCATCCCTACCGTATGGCGTTTCAAGAGTTGTTTAGACCTTCTCATAACAGCTT</canonical_amplicon>
		<polymorphic_amplicon>CCTACCATCTTCATATCACATTTTTACAAGCTCTCGGCCTCCAAGTATCAATTCCTTTATTCATGTTTGCCTTTCYTATGATTTATATCTTAGTAGCTATTCTTACAAACTATTATAATCAAACACTAATCAATATCGGAGTAATTGGATTATCCATGCACGGATTCTCTTCTTCTCTGGTTCTGGTTTATGTACACCATCCCTACCGTATGGCGTTTCAAGAGTTGTTTAGACCTTCTCATAACAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29278</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>93515</contig_pos>
        <strand>+</strand>
        <context>TATCTTAGTA[C/G]CTATTCTTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TATCAATTCCTTTATTCATGTTTGCCTTTCCTATGATTTATATCTTAGTA</left_flank>
        <right_flank>CTATTCTTACAAACTATTATAATCAAACACTAATCAATATCGGAGTAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCCGTGGATAGCTTGCCGTGGACCAGTTAGTCCAATCTCTCAAAAATACGTTCAGATTGCCAGAAACCAATAGGGCAGTCAGGCTACCGTATTCCACCTATTTTAGATGTACCCTAACCAAAAAGCTGCGGCCGGCCGTTGTTCTAAACCAGTGAATCATGAAAACTCAATGTACCCTTTTCGATGTACCCTTCAATATCGGACCCACATTTTCAGACCCTACCCTGTCTCTCGCCAAAAATATACGAGTCTGACTTTTTTGTGTTGACCGAAAACATCACTTATCACTTGCTCATATTCATCGCATTTTTCCTTACCTTCGGTATCAAAGTCATTTCTCTTACATTTGGACTTGTCTGGAATACGCTACACCTATTGAAGAGCCAACGAATGTCCCAAAGAACCTACCATCTTCATATCACATTTTTACAAGCTCTCGGCCTCCAAGTATCAATTCCTTTATTCATGTTTGCCTTTCCTATGATTTATATCTTAGTAGCTATTCTTACAAACTATTATAATCAAACACTAATCAATATCGGAGTAATTGGATTATCCATGCACGGATTCTCTTCTTCTCTGGTTCTGGTTTATGTACACCATCCCTACCGTATGGCGTTTCAAGAGTTGTTTAGACCTTCTCATAACAGCTTTCAAATAGCATCACAACACTCGACTAATTATCGACAGGATAACATTCGAGTTGGTGCCTCAAAATTTTGAATGGGTCATTAAATTTTTGAGGCCGTATGTATCCCTATTGTTCATTTTTACAGTAGCTATTCTTAGAAACGATTATAATCAAACATTAATAAATATGGGAGTCATTGAATAATCCATGCTCGGATTTAGTGAAATTTTTTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGGTGTTTTGCAGTTTTTCAGGTGTTTCAGGTCATTTTTAAAGGTTATTGAAAGTAAGAAAAAAAAGCGCAGACAGACTTGCTTCTCTAGAGCTCTACTTGA</canonical>
            <polymorphic>GGCCGTGGATAGCTTGCCGTGGACCAGTTAGTCCAATCTCTCAAAAATACGTTCAGATTGCCAGAAACCAATAGGGCAGTCAGGCTACCGTATTCCACCTATTTTAGATGTACCCTAACCAAAAAGCTGCGGCCGGCCGTTGTTCTAAACCAGTGAATCATGAAAACTCAATGTACCCTTTTCGATGTACCCTTCAATATCGGACCCACATTTTCAGACCCTACCCTGTCTCTCGCCAAAAATATACGAGTCTGACTTTTTTGTGTTGACCGAAAACATCACTTATCACTTGCTCATATTCATCGCATTTTTCCTTACCTTCGGTATCAAAGTCATTTCTCTTACATTTGGACTTGTCTGGAATACGCTACACCTATTGAAGAGCCAACGAATGTCCCAAAGAACCTACCATCTTCATATCACATTTTTACAAGCTCTCGGCCTCCAAGTATCAATTCCTTTATTCATGTTTGCCTTTCCTATGATTTATATCTTAGTASCTATTCTTACAAACTATTATAATCAAACACTAATCAATATCGGAGTAATTGGATTATCCATGCACGGATTCTCTTCTTCTCTGGTTCTGGTTTATGTACACCATCCCTACCGTATGGCGTTTCAAGAGTTGTTTAGACCTTCTCATAACAGCTTTCAAATAGCATCACAACACTCGACTAATTATCGACAGGATAACATTCGAGTTGGTGCCTCAAAATTTTGAATGGGTCATTAAATTTTTGAGGCCGTATGTATCCCTATTGTTCATTTTTACAGTAGCTATTCTTAGAAACGATTATAATCAAACATTAATAAATATGGGAGTCATTGAATAATCCATGCTCGGATTTAGTGAAATTTTTTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGGTGTTTTGCAGTTTTTCAGGTGTTTCAGGTCATTTTTAAAGGTTATTGAAAGTAAGAAAAAAAAGCGCAGACAGACTTGCTTCTCTAGAGCTCTACTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>308 210 151 129 114 66 12 10</canonical_bands>
                <polymorphic_bands>308 217 210 129 114 12 10</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>248 210 151 95 72 59 50 42 34 10 10 7 6 4 2</canonical_bands>
                <polymorphic_bands>248 210 210 95 72 50 42 34 10 10 7 6 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTACCATCTTCATATCACATTT</pcr_primer_p1>
		<pcr_primer_p2>AAGCTGTTATGAGAAGGTCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTACCATCTTCATATCACATTTTTACAAGCTCTCGGCCTCCAAGTATCAATTCCTTTATTCATGTTTGCCTTTCCTATGATTTATATCTTAGTAGCTATTCTTACAAACTATTATAATCAAACACTAATCAATATCGGAGTAATTGGATTATCCATGCACGGATTCTCTTCTTCTCTGGTTCTGGTTTATGTACACCATCCCTACCGTATGGCGTTTCAAGAGTTGTTTAGACCTTCTCATAACAGCTT</canonical_amplicon>
		<polymorphic_amplicon>CCTACCATCTTCATATCACATTTTTACAAGCTCTCGGCCTCCAAGTATCAATTCCTTTATTCATGTTTGCCTTTCCTATGATTTATATCTTAGTASCTATTCTTACAAACTATTATAATCAAACACTAATCAATATCGGAGTAATTGGATTATCCATGCACGGATTCTCTTCTTCTCTGGTTCTGGTTTATGTACACCATCCCTACCGTATGGCGTTTCAAGAGTTGTTTAGACCTTCTCATAACAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29279</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>93596</contig_pos>
        <strand>+</strand>
        <context>CTCTTCTTCT[C/T]TGGTTCTGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATCAATATCGGAGTAATTGGATTATCCATGCACGGATTCTCTTCTTCT</left_flank>
        <right_flank>TGGTTCTGGTTTATGTACACCATCCCTACCGTATGGCGTTTCAAGAGTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGCTACCGTATTCCACCTATTTTAGATGTACCCTAACCAAAAAGCTGCGGCCGGCCGTTGTTCTAAACCAGTGAATCATGAAAACTCAATGTACCCTTTTCGATGTACCCTTCAATATCGGACCCACATTTTCAGACCCTACCCTGTCTCTCGCCAAAAATATACGAGTCTGACTTTTTTGTGTTGACCGAAAACATCACTTATCACTTGCTCATATTCATCGCATTTTTCCTTACCTTCGGTATCAAAGTCATTTCTCTTACATTTGGACTTGTCTGGAATACGCTACACCTATTGAAGAGCCAACGAATGTCCCAAAGAACCTACCATCTTCATATCACATTTTTACAAGCTCTCGGCCTCCAAGTATCAATTCCTTTATTCATGTTTGCCTTTCCTATGATTTATATCTTAGTAGCTATTCTTACAAACTATTATAATCAAACACTAATCAATATCGGAGTAATTGGATTATCCATGCACGGATTCTCTTCTTCTCTGGTTCTGGTTTATGTACACCATCCCTACCGTATGGCGTTTCAAGAGTTGTTTAGACCTTCTCATAACAGCTTTCAAATAGCATCACAACACTCGACTAATTATCGACAGGATAACATTCGAGTTGGTGCCTCAAAATTTTGAATGGGTCATTAAATTTTTGAGGCCGTATGTATCCCTATTGTTCATTTTTACAGTAGCTATTCTTAGAAACGATTATAATCAAACATTAATAAATATGGGAGTCATTGAATAATCCATGCTCGGATTTAGTGAAATTTTTTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGGTGTTTTGCAGTTTTTCAGGTGTTTCAGGTCATTTTTAAAGGTTATTGAAAGTAAGAAAAAAAAGCGCAGACAGACTTGCTTCTCTAGAGCTCTACTTGAATTCAAAGGCGCATGCCATTAAAATTAACTGGCTAAGGAAAAAAAAAGAAAATAAGAGAAATGTAGCATAACATTTTGCAT</canonical>
            <polymorphic>AGGCTACCGTATTCCACCTATTTTAGATGTACCCTAACCAAAAAGCTGCGGCCGGCCGTTGTTCTAAACCAGTGAATCATGAAAACTCAATGTACCCTTTTCGATGTACCCTTCAATATCGGACCCACATTTTCAGACCCTACCCTGTCTCTCGCCAAAAATATACGAGTCTGACTTTTTTGTGTTGACCGAAAACATCACTTATCACTTGCTCATATTCATCGCATTTTTCCTTACCTTCGGTATCAAAGTCATTTCTCTTACATTTGGACTTGTCTGGAATACGCTACACCTATTGAAGAGCCAACGAATGTCCCAAAGAACCTACCATCTTCATATCACATTTTTACAAGCTCTCGGCCTCCAAGTATCAATTCCTTTATTCATGTTTGCCTTTCCTATGATTTATATCTTAGTAGCTATTCTTACAAACTATTATAATCAAACACTAATCAATATCGGAGTAATTGGATTATCCATGCACGGATTCTCTTCTTCTYTGGTTCTGGTTTATGTACACCATCCCTACCGTATGGCGTTTCAAGAGTTGTTTAGACCTTCTCATAACAGCTTTCAAATAGCATCACAACACTCGACTAATTATCGACAGGATAACATTCGAGTTGGTGCCTCAAAATTTTGAATGGGTCATTAAATTTTTGAGGCCGTATGTATCCCTATTGTTCATTTTTACAGTAGCTATTCTTAGAAACGATTATAATCAAACATTAATAAATATGGGAGTCATTGAATAATCCATGCTCGGATTTAGTGAAATTTTTTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGGTGTTTTGCAGTTTTTCAGGTGTTTCAGGTCATTTTTAAAGGTTATTGAAAGTAAGAAAAAAAAGCGCAGACAGACTTGCTTCTCTAGAGCTCTACTTGAATTCAAAGGCGCATGCCATTAAAATTAACTGGCTAAGGAAAAAAAAAGAAAATAAGAGAAATGTAGCATAACATTTTGCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTACCATCTTCATATCACATTT</pcr_primer_p1>
		<pcr_primer_p2>AAGCTGTTATGAGAAGGTCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTACCATCTTCATATCACATTTTTACAAGCTCTCGGCCTCCAAGTATCAATTCCTTTATTCATGTTTGCCTTTCCTATGATTTATATCTTAGTAGCTATTCTTACAAACTATTATAATCAAACACTAATCAATATCGGAGTAATTGGATTATCCATGCACGGATTCTCTTCTTCTCTGGTTCTGGTTTATGTACACCATCCCTACCGTATGGCGTTTCAAGAGTTGTTTAGACCTTCTCATAACAGCTT</canonical_amplicon>
		<polymorphic_amplicon>CCTACCATCTTCATATCACATTTTTACAAGCTCTCGGCCTCCAAGTATCAATTCCTTTATTCATGTTTGCCTTTCCTATGATTTATATCTTAGTAGCTATTCTTACAAACTATTATAATCAAACACTAATCAATATCGGAGTAATTGGATTATCCATGCACGGATTCTCTTCTTCTYTGGTTCTGGTTTATGTACACCATCCCTACCGTATGGCGTTTCAAGAGTTGTTTAGACCTTCTCATAACAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29280</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>93729</contig_pos>
        <strand>+</strand>
        <context>GTTGGTGCCT[C/T]AAAATTTTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCACAACACTCGACTAATTATCGACAGGATAACATTCGAGTTGGTGCCT</left_flank>
        <right_flank>AAAATTTTGAATGGGTCATTAAATTTTTGAGGCCGTATGTATCCCTATTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGACCCTACCCTGTCTCTCGCCAAAAATATACGAGTCTGACTTTTTTGTGTTGACCGAAAACATCACTTATCACTTGCTCATATTCATCGCATTTTTCCTTACCTTCGGTATCAAAGTCATTTCTCTTACATTTGGACTTGTCTGGAATACGCTACACCTATTGAAGAGCCAACGAATGTCCCAAAGAACCTACCATCTTCATATCACATTTTTACAAGCTCTCGGCCTCCAAGTATCAATTCCTTTATTCATGTTTGCCTTTCCTATGATTTATATCTTAGTAGCTATTCTTACAAACTATTATAATCAAACACTAATCAATATCGGAGTAATTGGATTATCCATGCACGGATTCTCTTCTTCTCTGGTTCTGGTTTATGTACACCATCCCTACCGTATGGCGTTTCAAGAGTTGTTTAGACCTTCTCATAACAGCTTTCAAATAGCATCACAACACTCGACTAATTATCGACAGGATAACATTCGAGTTGGTGCCTCAAAATTTTGAATGGGTCATTAAATTTTTGAGGCCGTATGTATCCCTATTGTTCATTTTTACAGTAGCTATTCTTAGAAACGATTATAATCAAACATTAATAAATATGGGAGTCATTGAATAATCCATGCTCGGATTTAGTGAAATTTTTTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGGTGTTTTGCAGTTTTTCAGGTGTTTCAGGTCATTTTTAAAGGTTATTGAAAGTAAGAAAAAAAAGCGCAGACAGACTTGCTTCTCTAGAGCTCTACTTGAATTCAAAGGCGCATGCCATTAAAATTAACTGGCTAAGGAAAAAAAAAGAAAATAAGAGAAATGTAGCATAACATTTTGCATTATTAGTTAATCACAAATTTTCTATGGATGATGAAGTTTCAACAAGACAATGGGATGGATAGTGACCGCGTTCGCCCGACCACTTACGTTTAGGCGCCTATACAGGGTGGCCCATAAGTATGGAGACTTTTGT</canonical>
            <polymorphic>CAGACCCTACCCTGTCTCTCGCCAAAAATATACGAGTCTGACTTTTTTGTGTTGACCGAAAACATCACTTATCACTTGCTCATATTCATCGCATTTTTCCTTACCTTCGGTATCAAAGTCATTTCTCTTACATTTGGACTTGTCTGGAATACGCTACACCTATTGAAGAGCCAACGAATGTCCCAAAGAACCTACCATCTTCATATCACATTTTTACAAGCTCTCGGCCTCCAAGTATCAATTCCTTTATTCATGTTTGCCTTTCCTATGATTTATATCTTAGTAGCTATTCTTACAAACTATTATAATCAAACACTAATCAATATCGGAGTAATTGGATTATCCATGCACGGATTCTCTTCTTCTCTGGTTCTGGTTTATGTACACCATCCCTACCGTATGGCGTTTCAAGAGTTGTTTAGACCTTCTCATAACAGCTTTCAAATAGCATCACAACACTCGACTAATTATCGACAGGATAACATTCGAGTTGGTGCCTYAAAATTTTGAATGGGTCATTAAATTTTTGAGGCCGTATGTATCCCTATTGTTCATTTTTACAGTAGCTATTCTTAGAAACGATTATAATCAAACATTAATAAATATGGGAGTCATTGAATAATCCATGCTCGGATTTAGTGAAATTTTTTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGGTGTTTTGCAGTTTTTCAGGTGTTTCAGGTCATTTTTAAAGGTTATTGAAAGTAAGAAAAAAAAGCGCAGACAGACTTGCTTCTCTAGAGCTCTACTTGAATTCAAAGGCGCATGCCATTAAAATTAACTGGCTAAGGAAAAAAAAAGAAAATAAGAGAAATGTAGCATAACATTTTGCATTATTAGTTAATCACAAATTTTCTATGGATGATGAAGTTTCAACAAGACAATGGGATGGATAGTGACCGCGTTCGCCCGACCACTTACGTTTAGGCGCCTATACAGGGTGGCCCATAAGTATGGAGACTTTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTCAAATAGCATCACAACACT</pcr_primer_p1>
		<pcr_primer_p2>CCCTAGTTAGTCATTCACTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTCAAATAGCATCACAACACTCGACTAATTATCGACAGGATAACATTCGAGTTGGTGCCTCAAAATTTTGAATGGGTCATTAAATTTTTGAGGCCGTATGTATCCCTATTGTTCATTTTTACAGTAGCTATTCTTAGAAACGATTATAATCAAACATTAATAAATATGGGAGTCATTGAATAATCCATGCTCGGATTTAGTGAAATTTTTTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGG</canonical_amplicon>
		<polymorphic_amplicon>CTTTCAAATAGCATCACAACACTCGACTAATTATCGACAGGATAACATTCGAGTTGGTGCCTYAAAATTTTGAATGGGTCATTAAATTTTTGAGGCCGTATGTATCCCTATTGTTCATTTTTACAGTAGCTATTCTTAGAAACGATTATAATCAAACATTAATAAATATGGGAGTCATTGAATAATCCATGCTCGGATTTAGTGAAATTTTTTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29281</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>93766</contig_pos>
        <strand>+</strand>
        <context>TTGAGGCCGT[A/G]TGTATCCCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAGTTGGTGCCTCAAAATTTTGAATGGGTCATTAAATTTTTGAGGCCGT</left_flank>
        <right_flank>TGTATCCCTATTGTTCATTTTTACAGTAGCTATTCTTAGAAACGATTATA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGACTTTTTTGTGTTGACCGAAAACATCACTTATCACTTGCTCATATTCATCGCATTTTTCCTTACCTTCGGTATCAAAGTCATTTCTCTTACATTTGGACTTGTCTGGAATACGCTACACCTATTGAAGAGCCAACGAATGTCCCAAAGAACCTACCATCTTCATATCACATTTTTACAAGCTCTCGGCCTCCAAGTATCAATTCCTTTATTCATGTTTGCCTTTCCTATGATTTATATCTTAGTAGCTATTCTTACAAACTATTATAATCAAACACTAATCAATATCGGAGTAATTGGATTATCCATGCACGGATTCTCTTCTTCTCTGGTTCTGGTTTATGTACACCATCCCTACCGTATGGCGTTTCAAGAGTTGTTTAGACCTTCTCATAACAGCTTTCAAATAGCATCACAACACTCGACTAATTATCGACAGGATAACATTCGAGTTGGTGCCTCAAAATTTTGAATGGGTCATTAAATTTTTGAGGCCGTATGTATCCCTATTGTTCATTTTTACAGTAGCTATTCTTAGAAACGATTATAATCAAACATTAATAAATATGGGAGTCATTGAATAATCCATGCTCGGATTTAGTGAAATTTTTTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGGTGTTTTGCAGTTTTTCAGGTGTTTCAGGTCATTTTTAAAGGTTATTGAAAGTAAGAAAAAAAAGCGCAGACAGACTTGCTTCTCTAGAGCTCTACTTGAATTCAAAGGCGCATGCCATTAAAATTAACTGGCTAAGGAAAAAAAAAGAAAATAAGAGAAATGTAGCATAACATTTTGCATTATTAGTTAATCACAAATTTTCTATGGATGATGAAGTTTCAACAAGACAATGGGATGGATAGTGACCGCGTTCGCCCGACCACTTACGTTTAGGCGCCTATACAGGGTGGCCCATAAGTATGGAGACTTTTGTTTTTGTGTCTAAAACCTAAAAAAGAGGGGTATCAAAA</canonical>
            <polymorphic>CTGACTTTTTTGTGTTGACCGAAAACATCACTTATCACTTGCTCATATTCATCGCATTTTTCCTTACCTTCGGTATCAAAGTCATTTCTCTTACATTTGGACTTGTCTGGAATACGCTACACCTATTGAAGAGCCAACGAATGTCCCAAAGAACCTACCATCTTCATATCACATTTTTACAAGCTCTCGGCCTCCAAGTATCAATTCCTTTATTCATGTTTGCCTTTCCTATGATTTATATCTTAGTAGCTATTCTTACAAACTATTATAATCAAACACTAATCAATATCGGAGTAATTGGATTATCCATGCACGGATTCTCTTCTTCTCTGGTTCTGGTTTATGTACACCATCCCTACCGTATGGCGTTTCAAGAGTTGTTTAGACCTTCTCATAACAGCTTTCAAATAGCATCACAACACTCGACTAATTATCGACAGGATAACATTCGAGTTGGTGCCTCAAAATTTTGAATGGGTCATTAAATTTTTGAGGCCGTRTGTATCCCTATTGTTCATTTTTACAGTAGCTATTCTTAGAAACGATTATAATCAAACATTAATAAATATGGGAGTCATTGAATAATCCATGCTCGGATTTAGTGAAATTTTTTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGGTGTTTTGCAGTTTTTCAGGTGTTTCAGGTCATTTTTAAAGGTTATTGAAAGTAAGAAAAAAAAGCGCAGACAGACTTGCTTCTCTAGAGCTCTACTTGAATTCAAAGGCGCATGCCATTAAAATTAACTGGCTAAGGAAAAAAAAAGAAAATAAGAGAAATGTAGCATAACATTTTGCATTATTAGTTAATCACAAATTTTCTATGGATGATGAAGTTTCAACAAGACAATGGGATGGATAGTGACCGCGTTCGCCCGACCACTTACGTTTAGGCGCCTATACAGGGTGGCCCATAAGTATGGAGACTTTTGTTTTTGTGTCTAAAACCTAAAAAAGAGGGGTATCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTCAAATAGCATCACAACACT</pcr_primer_p1>
		<pcr_primer_p2>CCCTAGTTAGTCATTCACTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTCAAATAGCATCACAACACTCGACTAATTATCGACAGGATAACATTCGAGTTGGTGCCTCAAAATTTTGAATGGGTCATTAAATTTTTGAGGCCGTATGTATCCCTATTGTTCATTTTTACAGTAGCTATTCTTAGAAACGATTATAATCAAACATTAATAAATATGGGAGTCATTGAATAATCCATGCTCGGATTTAGTGAAATTTTTTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGG</canonical_amplicon>
		<polymorphic_amplicon>CTTTCAAATAGCATCACAACACTCGACTAATTATCGACAGGATAACATTCGAGTTGGTGCCTCAAAATTTTGAATGGGTCATTAAATTTTTGAGGCCGTRTGTATCCCTATTGTTCATTTTTACAGTAGCTATTCTTAGAAACGATTATAATCAAACATTAATAAATATGGGAGTCATTGAATAATCCATGCTCGGATTTAGTGAAATTTTTTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29282</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>93859</contig_pos>
        <strand>+</strand>
        <context>TAATCCATGC[A/T]CGGATTTAKT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGATTATAATCAAACATTAATAAATATGGGAGTCATTGAATAATCCATGC</left_flank>
        <right_flank>CGGATTTAGTGAAATTTTTTTTCTATTCGTATCGTTTGAGTGAATGACTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTGGACTTGTCTGGAATACGCTACACCTATTGAAGAGCCAACGAATGTCCCAAAGAACCTACCATCTTCATATCACATTTTTACAAGCTCTCGGCCTCCAAGTATCAATTCCTTTATTCATGTTTGCCTTTCCTATGATTTATATCTTAGTAGCTATTCTTACAAACTATTATAATCAAACACTAATCAATATCGGAGTAATTGGATTATCCATGCACGGATTCTCTTCTTCTCTGGTTCTGGTTTATGTACACCATCCCTACCGTATGGCGTTTCAAGAGTTGTTTAGACCTTCTCATAACAGCTTTCAAATAGCATCACAACACTCGACTAATTATCGACAGGATAACATTCGAGTTGGTGCCTCAAAATTTTGAATGGGTCATTAAATTTTTGAGGCCGTATGTATCCCTATTGTTCATTTTTACAGTAGCTATTCTTAGAAACGATTATAATCAAACATTAATAAATATGGGAGTCATTGAATAATCCATGCTCGGATTTAGTGAAATTTTTTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGGTGTTTTGCAGTTTTTCAGGTGTTTCAGGTCATTTTTAAAGGTTATTGAAAGTAAGAAAAAAAAGCGCAGACAGACTTGCTTCTCTAGAGCTCTACTTGAATTCAAAGGCGCATGCCATTAAAATTAACTGGCTAAGGAAAAAAAAAGAAAATAAGAGAAATGTAGCATAACATTTTGCATTATTAGTTAATCACAAATTTTCTATGGATGATGAAGTTTCAACAAGACAATGGGATGGATAGTGACCGCGTTCGCCCGACCACTTACGTTTAGGCGCCTATACAGGGTGGCCCATAAGTATGGAGACTTTTGTTTTTGTGTCTAAAACCTAAAAAAGAGGGGTATCAAAAAAATGAACTTTATTTTCTGATAGAAGAGACCAAGAGAAACAGGTATATCCGAAGATATTCGAAATTTGATCCTCTGGCCTTGATGCAGGCCTT</canonical>
            <polymorphic>CATTTGGACTTGTCTGGAATACGCTACACCTATTGAAGAGCCAACGAATGTCCCAAAGAACCTACCATCTTCATATCACATTTTTACAAGCTCTCGGCCTCCAAGTATCAATTCCTTTATTCATGTTTGCCTTTCCTATGATTTATATCTTAGTAGCTATTCTTACAAACTATTATAATCAAACACTAATCAATATCGGAGTAATTGGATTATCCATGCACGGATTCTCTTCTTCTCTGGTTCTGGTTTATGTACACCATCCCTACCGTATGGCGTTTCAAGAGTTGTTTAGACCTTCTCATAACAGCTTTCAAATAGCATCACAACACTCGACTAATTATCGACAGGATAACATTCGAGTTGGTGCCTCAAAATTTTGAATGGGTCATTAAATTTTTGAGGCCGTATGTATCCCTATTGTTCATTTTTACAGTAGCTATTCTTAGAAACGATTATAATCAAACATTAATAAATATGGGAGTCATTGAATAATCCATGCWCGGATTTAGTGAAATTTTTTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGGTGTTTTGCAGTTTTTCAGGTGTTTCAGGTCATTTTTAAAGGTTATTGAAAGTAAGAAAAAAAAGCGCAGACAGACTTGCTTCTCTAGAGCTCTACTTGAATTCAAAGGCGCATGCCATTAAAATTAACTGGCTAAGGAAAAAAAAAGAAAATAAGAGAAATGTAGCATAACATTTTGCATTATTAGTTAATCACAAATTTTCTATGGATGATGAAGTTTCAACAAGACAATGGGATGGATAGTGACCGCGTTCGCCCGACCACTTACGTTTAGGCGCCTATACAGGGTGGCCCATAAGTATGGAGACTTTTGTTTTTGTGTCTAAAACCTAAAAAAGAGGGGTATCAAAAAAATGAACTTTATTTTCTGATAGAAGAGACCAAGAGAAACAGGTATATCCGAAGATATTCGAAATTTGATCCTCTGGCCTTGATGCAGGCCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>423 304 198 43 32</canonical_bands>
                <polymorphic_bands>727 198 43 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTCAAATAGCATCACAACACT</pcr_primer_p1>
		<pcr_primer_p2>CCCTAGTTAGTCATTCACTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTCAAATAGCATCACAACACTCGACTAATTATCGACAGGATAACATTCGAGTTGGTGCCTCAAAATTTTGAATGGGTCATTAAATTTTTGAGGCCGTATGTATCCCTATTGTTCATTTTTACAGTAGCTATTCTTAGAAACGATTATAATCAAACATTAATAAATATGGGAGTCATTGAATAATCCATGCTCGGATTTAGTGAAATTTTTTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGG</canonical_amplicon>
		<polymorphic_amplicon>CTTTCAAATAGCATCACAACACTCGACTAATTATCGACAGGATAACATTCGAGTTGGTGCCTCAAAATTTTGAATGGGTCATTAAATTTTTGAGGCCGTATGTATCCCTATTGTTCATTTTTACAGTAGCTATTCTTAGAAACGATTATAATCAAACATTAATAAATATGGGAGTCATTGAATAATCCATGCWCGGATTTAGTGAAATTTTTTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29283</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>93868</contig_pos>
        <strand>+</strand>
        <context>CWCGGATTTA[G/T]TGAAATTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCAAACATTAATAAATATGGGAGTCATTGAATAATCCATGCTCGGATTTA</left_flank>
        <right_flank>TGAAATTTTTTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTCTGGAATACGCTACACCTATTGAAGAGCCAACGAATGTCCCAAAGAACCTACCATCTTCATATCACATTTTTACAAGCTCTCGGCCTCCAAGTATCAATTCCTTTATTCATGTTTGCCTTTCCTATGATTTATATCTTAGTAGCTATTCTTACAAACTATTATAATCAAACACTAATCAATATCGGAGTAATTGGATTATCCATGCACGGATTCTCTTCTTCTCTGGTTCTGGTTTATGTACACCATCCCTACCGTATGGCGTTTCAAGAGTTGTTTAGACCTTCTCATAACAGCTTTCAAATAGCATCACAACACTCGACTAATTATCGACAGGATAACATTCGAGTTGGTGCCTCAAAATTTTGAATGGGTCATTAAATTTTTGAGGCCGTATGTATCCCTATTGTTCATTTTTACAGTAGCTATTCTTAGAAACGATTATAATCAAACATTAATAAATATGGGAGTCATTGAATAATCCATGCTCGGATTTAGTGAAATTTTTTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGGTGTTTTGCAGTTTTTCAGGTGTTTCAGGTCATTTTTAAAGGTTATTGAAAGTAAGAAAAAAAAGCGCAGACAGACTTGCTTCTCTAGAGCTCTACTTGAATTCAAAGGCGCATGCCATTAAAATTAACTGGCTAAGGAAAAAAAAAGAAAATAAGAGAAATGTAGCATAACATTTTGCATTATTAGTTAATCACAAATTTTCTATGGATGATGAAGTTTCAACAAGACAATGGGATGGATAGTGACCGCGTTCGCCCGACCACTTACGTTTAGGCGCCTATACAGGGTGGCCCATAAGTATGGAGACTTTTGTTTTTGTGTCTAAAACCTAAAAAAGAGGGGTATCAAAAAAATGAACTTTATTTTCTGATAGAAGAGACCAAGAGAAACAGGTATATCCGAAGATATTCGAAATTTGATCCTCTGGCCTTGATGCAGGCCTTCAGATGATC</canonical>
            <polymorphic>TTGTCTGGAATACGCTACACCTATTGAAGAGCCAACGAATGTCCCAAAGAACCTACCATCTTCATATCACATTTTTACAAGCTCTCGGCCTCCAAGTATCAATTCCTTTATTCATGTTTGCCTTTCCTATGATTTATATCTTAGTAGCTATTCTTACAAACTATTATAATCAAACACTAATCAATATCGGAGTAATTGGATTATCCATGCACGGATTCTCTTCTTCTCTGGTTCTGGTTTATGTACACCATCCCTACCGTATGGCGTTTCAAGAGTTGTTTAGACCTTCTCATAACAGCTTTCAAATAGCATCACAACACTCGACTAATTATCGACAGGATAACATTCGAGTTGGTGCCTCAAAATTTTGAATGGGTCATTAAATTTTTGAGGCCGTATGTATCCCTATTGTTCATTTTTACAGTAGCTATTCTTAGAAACGATTATAATCAAACATTAATAAATATGGGAGTCATTGAATAATCCATGCTCGGATTTAKTGAAATTTTTTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGGTGTTTTGCAGTTTTTCAGGTGTTTCAGGTCATTTTTAAAGGTTATTGAAAGTAAGAAAAAAAAGCGCAGACAGACTTGCTTCTCTAGAGCTCTACTTGAATTCAAAGGCGCATGCCATTAAAATTAACTGGCTAAGGAAAAAAAAAGAAAATAAGAGAAATGTAGCATAACATTTTGCATTATTAGTTAATCACAAATTTTCTATGGATGATGAAGTTTCAACAAGACAATGGGATGGATAGTGACCGCGTTCGCCCGACCACTTACGTTTAGGCGCCTATACAGGGTGGCCCATAAGTATGGAGACTTTTGTTTTTGTGTCTAAAACCTAAAAAAGAGGGGTATCAAAAAAATGAACTTTATTTTCTGATAGAAGAGACCAAGAGAAACAGGTATATCCGAAGATATTCGAAATTTGATCCTCTGGCCTTGATGCAGGCCTTCAGATGATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>172 145 132 107 67 51 50 38 36 35 31 31 27 19 19 18 17 5</canonical_bands>
                <polymorphic_bands>176 172 132 107 67 51 50 38 36 35 31 27 19 19 18 17 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAGCATCACAACACTCGACTA</pcr_primer_p1>
		<pcr_primer_p2>CAAAACACCCTAGTTAGTCATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAGCATCACAACACTCGACTAATTATCGACAGGATAACATTCGAGTTGGTGCCTCAAAATTTTGAATGGGTCATTAAATTTTTGAGGCCGTATGTATCCCTATTGTTCATTTTTACAGTAGCTATTCTTAGAAACGATTATAATCAAACATTAATAAATATGGGAGTCATTGAATAATCCATGCTCGGATTTAGTGAAATTTTTTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGGTGTTTTG</canonical_amplicon>
		<polymorphic_amplicon>ATAGCATCACAACACTCGACTAATTATCGACAGGATAACATTCGAGTTGGTGCCTCAAAATTTTGAATGGGTCATTAAATTTTTGAGGCCGTATGTATCCCTATTGTTCATTTTTACAGTAGCTATTCTTAGAAACGATTATAATCAAACATTAATAAATATGGGAGTCATTGAATAATCCATGCTCGGATTTAKTGAAATTTTTTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGGTGTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29284</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>94036</contig_pos>
        <strand>+</strand>
        <context>GCATGCCATT[A/C]MAATTAACTR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACAGACTTGCTTCTCTAGAGCTCTACTTGAATTCAAAGGCGCATGCCATT</left_flank>
        <right_flank>AAATTAACTGGCTAAGGAAAAAAAAAGAAAATAAGAGAAATGTAGCATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAAACACTAATCAATATCGGAGTAATTGGATTATCCATGCACGGATTCTCTTCTTCTCTGGTTCTGGTTTATGTACACCATCCCTACCGTATGGCGTTTCAAGAGTTGTTTAGACCTTCTCATAACAGCTTTCAAATAGCATCACAACACTCGACTAATTATCGACAGGATAACATTCGAGTTGGTGCCTCAAAATTTTGAATGGGTCATTAAATTTTTGAGGCCGTATGTATCCCTATTGTTCATTTTTACAGTAGCTATTCTTAGAAACGATTATAATCAAACATTAATAAATATGGGAGTCATTGAATAATCCATGCTCGGATTTAGTGAAATTTTTTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGGTGTTTTGCAGTTTTTCAGGTGTTTCAGGTCATTTTTAAAGGTTATTGAAAGTAAGAAAAAAAAGCGCAGACAGACTTGCTTCTCTAGAGCTCTACTTGAATTCAAAGGCGCATGCCATTAAAATTAACTGGCTAAGGAAAAAAAAAGAAAATAAGAGAAATGTAGCATAACATTTTGCATTATTAGTTAATCACAAATTTTCTATGGATGATGAAGTTTCAACAAGACAATGGGATGGATAGTGACCGCGTTCGCCCGACCACTTACGTTTAGGCGCCTATACAGGGTGGCCCATAAGTATGGAGACTTTTGTTTTTGTGTCTAAAACCTAAAAAAGAGGGGTATCAAAAAAATGAACTTTATTTTCTGATAGAAGAGACCAAGAGAAACAGGTATATCCGAAGATATTCGAAATTTGATCCTCTGGCCTTGATGCAGGCCTTCAGATGATCCTCAAAAAAGGCATTGTGGGCCGCAGGTAGTTGGTGTCTATTTCATCGCATAACTTAAGAAGTTCTTGTTTGAGAAAGTGGAAATTTGGGTGAGAGCAAGTCATGATCCTGTTCTCCAATCAGCTCTAATAAGAAAAATCTAACTCGTTAAGATCTTGCGAGGAGACG</canonical>
            <polymorphic>ATCAAACACTAATCAATATCGGAGTAATTGGATTATCCATGCACGGATTCTCTTCTTCTCTGGTTCTGGTTTATGTACACCATCCCTACCGTATGGCGTTTCAAGAGTTGTTTAGACCTTCTCATAACAGCTTTCAAATAGCATCACAACACTCGACTAATTATCGACAGGATAACATTCGAGTTGGTGCCTCAAAATTTTGAATGGGTCATTAAATTTTTGAGGCCGTATGTATCCCTATTGTTCATTTTTACAGTAGCTATTCTTAGAAACGATTATAATCAAACATTAATAAATATGGGAGTCATTGAATAATCCATGCTCGGATTTAGTGAAATTTTTTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGGTGTTTTGCAGTTTTTCAGGTGTTTCAGGTCATTTTTAAAGGTTATTGAAAGTAAGAAAAAAAAGCGCAGACAGACTTGCTTCTCTAGAGCTCTACTTGAATTCAAAGGCGCATGCCATTMAAATTAACTGGCTAAGGAAAAAAAAAGAAAATAAGAGAAATGTAGCATAACATTTTGCATTATTAGTTAATCACAAATTTTCTATGGATGATGAAGTTTCAACAAGACAATGGGATGGATAGTGACCGCGTTCGCCCGACCACTTACGTTTAGGCGCCTATACAGGGTGGCCCATAAGTATGGAGACTTTTGTTTTTGTGTCTAAAACCTAAAAAAGAGGGGTATCAAAAAAATGAACTTTATTTTCTGATAGAAGAGACCAAGAGAAACAGGTATATCCGAAGATATTCGAAATTTGATCCTCTGGCCTTGATGCAGGCCTTCAGATGATCCTCAAAAAAGGCATTGTGGGCCGCAGGTAGTTGGTGTCTATTTCATCGCATAACTTAAGAAGTTCTTGTTTGAGAAAGTGGAAATTTGGGTGAGAGCAAGTCATGATCCTGTTCTCCAATCAGCTCTAATAAGAAAAATCTAACTCGTTAAGATCTTGCGAGGAGACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>320 212 126 93 83 77 63 20 6</canonical_bands>
                <polymorphic_bands>320 212 126 93 89 77 63 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTATTCGTATCGTTTGAGT</pcr_primer_p1>
		<pcr_primer_p2>TCATCCATAGAAAATTTGTGATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGGTGTTTTGCAGTTTTTCAGGTGTTTCAGGTCATTTTTAAAGGTTATTGAAAGTAAGAAAAAAAAGCGCAGACAGACTTGCTTCTCTAGAGCTCTACTTGAATTCAAAGGCGCATGCCATTAAAATTAACTGGCTAAGGAAAAAAAAAGAAAATAAGAGAAATGTAGCATAACATTTTGCATTATTAGTTAATCACAAATTTTCTATGGATGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGGTGTTTTGCAGTTTTTCAGGTGTTTCAGGTCATTTTTAAAGGTTATTGAAAGTAAGAAAAAAAAGCGCAGACAGACTTGCTTCTCTAGAGCTCTACTTGAATTCAAAGGCGCATGCCATTMAAATTAACTGGCTAAGGAAAAAAAAAGAAAATAAGAGAAATGTAGCATAACATTTTGCATTATTAGTTAATCACAAATTTTCTATGGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29285</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>94037</contig_pos>
        <strand>+</strand>
        <context>CATGCCATTM[A/C]AATTAACTRG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAGACTTGCTTCTCTAGAGCTCTACTTGAATTCAAAGGCGCATGCCATTA</left_flank>
        <right_flank>AATTAACTGGCTAAGGAAAAAAAAAGAAAATAAGAGAAATGTAGCATAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAACACTAATCAATATCGGAGTAATTGGATTATCCATGCACGGATTCTCTTCTTCTCTGGTTCTGGTTTATGTACACCATCCCTACCGTATGGCGTTTCAAGAGTTGTTTAGACCTTCTCATAACAGCTTTCAAATAGCATCACAACACTCGACTAATTATCGACAGGATAACATTCGAGTTGGTGCCTCAAAATTTTGAATGGGTCATTAAATTTTTGAGGCCGTATGTATCCCTATTGTTCATTTTTACAGTAGCTATTCTTAGAAACGATTATAATCAAACATTAATAAATATGGGAGTCATTGAATAATCCATGCTCGGATTTAGTGAAATTTTTTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGGTGTTTTGCAGTTTTTCAGGTGTTTCAGGTCATTTTTAAAGGTTATTGAAAGTAAGAAAAAAAAGCGCAGACAGACTTGCTTCTCTAGAGCTCTACTTGAATTCAAAGGCGCATGCCATTAAAATTAACTGGCTAAGGAAAAAAAAAGAAAATAAGAGAAATGTAGCATAACATTTTGCATTATTAGTTAATCACAAATTTTCTATGGATGATGAAGTTTCAACAAGACAATGGGATGGATAGTGACCGCGTTCGCCCGACCACTTACGTTTAGGCGCCTATACAGGGTGGCCCATAAGTATGGAGACTTTTGTTTTTGTGTCTAAAACCTAAAAAAGAGGGGTATCAAAAAAATGAACTTTATTTTCTGATAGAAGAGACCAAGAGAAACAGGTATATCCGAAGATATTCGAAATTTGATCCTCTGGCCTTGATGCAGGCCTTCAGATGATCCTCAAAAAAGGCATTGTGGGCCGCAGGTAGTTGGTGTCTATTTCATCGCATAACTTAAGAAGTTCTTGTTTGAGAAAGTGGAAATTTGGGTGAGAGCAAGTCATGATCCTGTTCTCCAATCAGCTCTAATAAGAAAAATCTAACTCGTTAAGATCTTGCGAGGAGACGA</canonical>
            <polymorphic>TCAAACACTAATCAATATCGGAGTAATTGGATTATCCATGCACGGATTCTCTTCTTCTCTGGTTCTGGTTTATGTACACCATCCCTACCGTATGGCGTTTCAAGAGTTGTTTAGACCTTCTCATAACAGCTTTCAAATAGCATCACAACACTCGACTAATTATCGACAGGATAACATTCGAGTTGGTGCCTCAAAATTTTGAATGGGTCATTAAATTTTTGAGGCCGTATGTATCCCTATTGTTCATTTTTACAGTAGCTATTCTTAGAAACGATTATAATCAAACATTAATAAATATGGGAGTCATTGAATAATCCATGCTCGGATTTAGTGAAATTTTTTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGGTGTTTTGCAGTTTTTCAGGTGTTTCAGGTCATTTTTAAAGGTTATTGAAAGTAAGAAAAAAAAGCGCAGACAGACTTGCTTCTCTAGAGCTCTACTTGAATTCAAAGGCGCATGCCATTAMAATTAACTGGCTAAGGAAAAAAAAAGAAAATAAGAGAAATGTAGCATAACATTTTGCATTATTAGTTAATCACAAATTTTCTATGGATGATGAAGTTTCAACAAGACAATGGGATGGATAGTGACCGCGTTCGCCCGACCACTTACGTTTAGGCGCCTATACAGGGTGGCCCATAAGTATGGAGACTTTTGTTTTTGTGTCTAAAACCTAAAAAAGAGGGGTATCAAAAAAATGAACTTTATTTTCTGATAGAAGAGACCAAGAGAAACAGGTATATCCGAAGATATTCGAAATTTGATCCTCTGGCCTTGATGCAGGCCTTCAGATGATCCTCAAAAAAGGCATTGTGGGCCGCAGGTAGTTGGTGTCTATTTCATCGCATAACTTAAGAAGTTCTTGTTTGAGAAAGTGGAAATTTGGGTGAGAGCAAGTCATGATCCTGTTCTCCAATCAGCTCTAATAAGAAAAATCTAACTCGTTAAGATCTTGCGAGGAGACGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>320 211 126 93 83 77 63 21 6</canonical_bands>
                <polymorphic_bands>320 211 126 93 89 77 63 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTATTCGTATCGTTTGAGT</pcr_primer_p1>
		<pcr_primer_p2>TCATCCATAGAAAATTTGTGATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGGTGTTTTGCAGTTTTTCAGGTGTTTCAGGTCATTTTTAAAGGTTATTGAAAGTAAGAAAAAAAAGCGCAGACAGACTTGCTTCTCTAGAGCTCTACTTGAATTCAAAGGCGCATGCCATTAAAATTAACTGGCTAAGGAAAAAAAAAGAAAATAAGAGAAATGTAGCATAACATTTTGCATTATTAGTTAATCACAAATTTTCTATGGATGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGGTGTTTTGCAGTTTTTCAGGTGTTTCAGGTCATTTTTAAAGGTTATTGAAAGTAAGAAAAAAAAGCGCAGACAGACTTGCTTCTCTAGAGCTCTACTTGAATTCAAAGGCGCATGCCATTAMAATTAACTGGCTAAGGAAAAAAAAAGAAAATAAGAGAAATGTAGCATAACATTTTGCATTATTAGTTAATCACAAATTTTCTATGGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29286</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>94046</contig_pos>
        <strand>+</strand>
        <context>MMAATTAACT[A/G]GCTAAGGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTCTAGAGCTCTACTTGAATTCAAAGGCGCATGCCATTAAAATTAACT</left_flank>
        <right_flank>GCTAAGGAAAAAAAAAGAAAATAAGAGAAATGTAGCATAACATTTTGCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCAATATCGGAGTAATTGGATTATCCATGCACGGATTCTCTTCTTCTCTGGTTCTGGTTTATGTACACCATCCCTACCGTATGGCGTTTCAAGAGTTGTTTAGACCTTCTCATAACAGCTTTCAAATAGCATCACAACACTCGACTAATTATCGACAGGATAACATTCGAGTTGGTGCCTCAAAATTTTGAATGGGTCATTAAATTTTTGAGGCCGTATGTATCCCTATTGTTCATTTTTACAGTAGCTATTCTTAGAAACGATTATAATCAAACATTAATAAATATGGGAGTCATTGAATAATCCATGCTCGGATTTAGTGAAATTTTTTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGGTGTTTTGCAGTTTTTCAGGTGTTTCAGGTCATTTTTAAAGGTTATTGAAAGTAAGAAAAAAAAGCGCAGACAGACTTGCTTCTCTAGAGCTCTACTTGAATTCAAAGGCGCATGCCATTAAAATTAACTGGCTAAGGAAAAAAAAAGAAAATAAGAGAAATGTAGCATAACATTTTGCATTATTAGTTAATCACAAATTTTCTATGGATGATGAAGTTTCAACAAGACAATGGGATGGATAGTGACCGCGTTCGCCCGACCACTTACGTTTAGGCGCCTATACAGGGTGGCCCATAAGTATGGAGACTTTTGTTTTTGTGTCTAAAACCTAAAAAAGAGGGGTATCAAAAAAATGAACTTTATTTTCTGATAGAAGAGACCAAGAGAAACAGGTATATCCGAAGATATTCGAAATTTGATCCTCTGGCCTTGATGCAGGCCTTCAGATGATCCTCAAAAAAGGCATTGTGGGCCGCAGGTAGTTGGTGTCTATTTCATCGCATAACTTAAGAAGTTCTTGTTTGAGAAAGTGGAAATTTGGGTGAGAGCAAGTCATGATCCTGTTCTCCAATCAGCTCTAATAAGAAAAATCTAACTCGTTAAGATCTTGCGAGGAGACGAGCCGGAAGT</canonical>
            <polymorphic>AATCAATATCGGAGTAATTGGATTATCCATGCACGGATTCTCTTCTTCTCTGGTTCTGGTTTATGTACACCATCCCTACCGTATGGCGTTTCAAGAGTTGTTTAGACCTTCTCATAACAGCTTTCAAATAGCATCACAACACTCGACTAATTATCGACAGGATAACATTCGAGTTGGTGCCTCAAAATTTTGAATGGGTCATTAAATTTTTGAGGCCGTATGTATCCCTATTGTTCATTTTTACAGTAGCTATTCTTAGAAACGATTATAATCAAACATTAATAAATATGGGAGTCATTGAATAATCCATGCTCGGATTTAGTGAAATTTTTTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGGTGTTTTGCAGTTTTTCAGGTGTTTCAGGTCATTTTTAAAGGTTATTGAAAGTAAGAAAAAAAAGCGCAGACAGACTTGCTTCTCTAGAGCTCTACTTGAATTCAAAGGCGCATGCCATTAAAATTAACTRGCTAAGGAAAAAAAAAGAAAATAAGAGAAATGTAGCATAACATTTTGCATTATTAGTTAATCACAAATTTTCTATGGATGATGAAGTTTCAACAAGACAATGGGATGGATAGTGACCGCGTTCGCCCGACCACTTACGTTTAGGCGCCTATACAGGGTGGCCCATAAGTATGGAGACTTTTGTTTTTGTGTCTAAAACCTAAAAAAGAGGGGTATCAAAAAAATGAACTTTATTTTCTGATAGAAGAGACCAAGAGAAACAGGTATATCCGAAGATATTCGAAATTTGATCCTCTGGCCTTGATGCAGGCCTTCAGATGATCCTCAAAAAAGGCATTGTGGGCCGCAGGTAGTTGGTGTCTATTTCATCGCATAACTTAAGAAGTTCTTGTTTGAGAAAGTGGAAATTTGGGTGAGAGCAAGTCATGATCCTGTTCTCCAATCAGCTCTAATAAGAAAAATCTAACTCGTTAAGATCTTGCGAGGAGACGAGCCGGAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>210 159 137 120 103 95 47 42 34 33 12 8</canonical_bands>
                <polymorphic_bands>210 201 137 120 103 95 47 34 33 12 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTATTCGTATCGTTTGAGT</pcr_primer_p1>
		<pcr_primer_p2>TCATCCATAGAAAATTTGTGATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGGTGTTTTGCAGTTTTTCAGGTGTTTCAGGTCATTTTTAAAGGTTATTGAAAGTAAGAAAAAAAAGCGCAGACAGACTTGCTTCTCTAGAGCTCTACTTGAATTCAAAGGCGCATGCCATTAAAATTAACTGGCTAAGGAAAAAAAAAGAAAATAAGAGAAATGTAGCATAACATTTTGCATTATTAGTTAATCACAAATTTTCTATGGATGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTATTCGTATCGTTTGAGTGAATGACTAACTAGGGTGTTTTGCAGTTTTTCAGGTGTTTCAGGTCATTTTTAAAGGTTATTGAAAGTAAGAAAAAAAAGCGCAGACAGACTTGCTTCTCTAGAGCTCTACTTGAATTCAAAGGCGCATGCCATTAAAATTAACTRGCTAAGGAAAAAAAAAGAAAATAAGAGAAATGTAGCATAACATTTTGCATTATTAGTTAATCACAAATTTTCTATGGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29287</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>100443</contig_pos>
        <strand>+</strand>
        <context>GAATAAGCGC[A/C]AACACGYGCC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGC</left_flank>
        <right_flank>AACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGACATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGCGATTCAAAGATTCCAAGAAAAACTTTGTGCCAAGTGCTGGGAACCTCCCAACTGTCGGAGAACGTGATCCCGAAGAGGAAATCAATTATGACACCCAACATCTGGACACGGAGCCAGTAGACGGAGAATACAGAGACCCAAATGAAACAGCAAAGCAGATTCTGGACTACGGTAAAAATGCTGTACCGGATACAAGGACAAGAGAGTACCTACCAAGGAAAGCGAAAGCACCTTACATCAACTATGTCCATGCTACAGTAGTCTCTTCGTCTGGGGCCCGGCCCCCCCCCCCAATGTTGTCAATTTTCCCCATTGTCTTGGGACACTGACAACTTGAAAACGCTATAACCCAGAGTCCCCCGATTTTCCCCATAAAATCCCTCTGGATTATCCGTTTCAATCGTGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCCAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGACATGAGCGGCGCATTCAGCGCACGCTCACAGACGAATTGTTCGTTTCAGGGAGACGGGTATCTCCCCCTTTTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTTACCCATTACTATTGTCTTTGCCGTTTATTCGATCCTCTTTCCTTCAATAAATTGGGATTCGAATAGCTTGTGTACTGCTATGCACTTGCACCGCTTATCTTACACATTGGGGGGGGGTTTGGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGGCTGACCTCGGATCCACTGTCAACATCTTCGCCGCTG</canonical>
            <polymorphic>AAAGCGATTCAAAGATTCCAAGAAAAACTTTGTGCCAAGTGCTGGGAACCTCCCAACTGTCGGAGAACGTGATCCCGAAGAGGAAATCAATTATGACACCCAACATCTGGACACGGAGCCAGTAGACGGAGAATACAGAGACCCAAATGAAACAGCAAAGCAGATTCTGGACTACGGTAAAAATGCTGTACCGGATACAAGGACAAGAGAGTACCTACCAAGGAAAGCGAAAGCACCTTACATCAACTATGTCCATGCTACAGTAGTCTCTTCGTCTGGGGCCCGGCCCCCCCCCCCAATGTTGTCAATTTTCCCCATTGTCTTGGGACACTGACAACTTGAAAACGCTATAACCCAGAGTCCCCCGATTTTCCCCATAAAATCCCTCTGGATTATCCGTTTCAATCGTGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCMAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGACATGAGCGGCGCATTCAGCGCACGCTCACAGACGAATTGTTCGTTTCAGGGAGACGGGTATCTCCCCCTTTTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTTACCCATTACTATTGTCTTTGCCGTTTATTCGATCCTCTTTCCTTCAATAAATTGGGATTCGAATAGCTTGTGTACTGCTATGCACTTGCACCGCTTATCTTACACATTGGGGGGGGGTTTGGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGGCTGACCTCGGATCCACTGTCAACATCTTCGCCGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>499 458 43</canonical_bands>
                <polymorphic_bands>542 458</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTTATCACACTCCGTTCAC</pcr_primer_p1>
		<pcr_primer_p2>CAAACGTAGGAAATAGTCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCCAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGACATGAGCGGCGCATTCAGCGCACGCTCACAGACGAATTGTTCGTTTCAGGGAGACGGGTATCTCCCCCTTTTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTG</canonical_amplicon>
		<polymorphic_amplicon>TTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCMAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGACATGAGCGGCGCATTCAGCGCACGCTCACAGACGAATTGTTCGTTTCAGGGAGACGGGTATCTCCCCCTTTTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29288</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>100450</contig_pos>
        <strand>+</strand>
        <context>CGCMAACACG[C/T]GCCGCGACAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCCAACACG</left_flank>
        <right_flank>GCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGACATGAGCGGCGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAAAGATTCCAAGAAAAACTTTGTGCCAAGTGCTGGGAACCTCCCAACTGTCGGAGAACGTGATCCCGAAGAGGAAATCAATTATGACACCCAACATCTGGACACGGAGCCAGTAGACGGAGAATACAGAGACCCAAATGAAACAGCAAAGCAGATTCTGGACTACGGTAAAAATGCTGTACCGGATACAAGGACAAGAGAGTACCTACCAAGGAAAGCGAAAGCACCTTACATCAACTATGTCCATGCTACAGTAGTCTCTTCGTCTGGGGCCCGGCCCCCCCCCCCAATGTTGTCAATTTTCCCCATTGTCTTGGGACACTGACAACTTGAAAACGCTATAACCCAGAGTCCCCCGATTTTCCCCATAAAATCCCTCTGGATTATCCGTTTCAATCGTGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCCAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGACATGAGCGGCGCATTCAGCGCACGCTCACAGACGAATTGTTCGTTTCAGGGAGACGGGTATCTCCCCCTTTTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTTACCCATTACTATTGTCTTTGCCGTTTATTCGATCCTCTTTCCTTCAATAAATTGGGATTCGAATAGCTTGTGTACTGCTATGCACTTGCACCGCTTATCTTACACATTGGGGGGGGGTTTGGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGGCTGACCTCGGATCCACTGTCAACATCTTCGCCGCTGTCATGGT</canonical>
            <polymorphic>TTCAAAGATTCCAAGAAAAACTTTGTGCCAAGTGCTGGGAACCTCCCAACTGTCGGAGAACGTGATCCCGAAGAGGAAATCAATTATGACACCCAACATCTGGACACGGAGCCAGTAGACGGAGAATACAGAGACCCAAATGAAACAGCAAAGCAGATTCTGGACTACGGTAAAAATGCTGTACCGGATACAAGGACAAGAGAGTACCTACCAAGGAAAGCGAAAGCACCTTACATCAACTATGTCCATGCTACAGTAGTCTCTTCGTCTGGGGCCCGGCCCCCCCCCCCAATGTTGTCAATTTTCCCCATTGTCTTGGGACACTGACAACTTGAAAACGCTATAACCCAGAGTCCCCCGATTTTCCCCATAAAATCCCTCTGGATTATCCGTTTCAATCGTGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCCAACACGYGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGACATGAGCGGCGCATTCAGCGCACGCTCACAGACGAATTGTTCGTTTCAGGGAGACGGGTATCTCCCCCTTTTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTTACCCATTACTATTGTCTTTGCCGTTTATTCGATCCTCTTTCCTTCAATAAATTGGGATTCGAATAGCTTGTGTACTGCTATGCACTTGCACCGCTTATCTTACACATTGGGGGGGGGTTTGGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGGCTGACCTCGGATCCACTGTCAACATCTTCGCCGCTGTCATGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACGTG</site>
                <isoschizomers>
                    <enzyme>AcvI</enzyme>
                    <enzyme>BbrPI</enzyme>
                    <enzyme>Eco72I</enzyme>
                    <enzyme>PmaCI</enzyme>
                    <enzyme>PmlI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>495 491 14</canonical_bands>
                <polymorphic_bands>509 491</polymorphic_bands>
            </assay>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>122 108 103 95 87 80 76 51 33 30 28 27 27 24 19 15 14 12 9 8 7 7 6 6 4 2</canonical_bands>
                <polymorphic_bands>122 108 103 95 87 80 76 51 33 30 28 27 27 24 19 15 14 12 12 9 7 7 6 6 2</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>437 278 165 60 60</canonical_bands>
                <polymorphic_bands>602 278 60 60</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTTATCACACTCCGTTCAC</pcr_primer_p1>
		<pcr_primer_p2>CAAACGTAGGAAATAGTCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCCAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGACATGAGCGGCGCATTCAGCGCACGCTCACAGACGAATTGTTCGTTTCAGGGAGACGGGTATCTCCCCCTTTTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTG</canonical_amplicon>
		<polymorphic_amplicon>TTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCCAACACGYGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGACATGAGCGGCGCATTCAGCGCACGCTCACAGACGAATTGTTCGTTTCAGGGAGACGGGTATCTCCCCCTTTTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29289</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>118572</contig_pos>
        <strand>+</strand>
        <context>ATGTTGGTAA[A/C]TMCAGYARAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAA</left_flank>
        <right_flank>TACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAAAATGGAGCTCACAGCTATCATCATGGGAACCAACCTAGCTATTGCTGCAAAGAAAGAAATCCCAATACCAGTAGTGGAAATCTGTTTCTTGACAGACAGTTCGATCTCATTCTTCTGGATCCTAAAAGAACATACAACTCGCCCATATGTATCCAACAGGGTAAACGATTATCATATCAATAAATCTTGGATCGAGAAGACAGGAACCGAAGTAGCTTTACTACACTGTCCGACTGAGTTCAACCCAGCCGACGCCGCTACTCGCGGACTCACCACTACCGAATACAATGAAAATCAGCAATGGCCACATGGTCCCAAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAAGGACGAAGACGGCTTAATCCGATTCAAATCACATGTGAAATCAAGTGTACTCCCAGCAGAGACACACACCCCAATCATGATTCACAAAGATCACAAAATTGCATTCATGCTCGTAAGGGAAGCCCACGAAATCAACGGACACCTCCCAGCGGGATACCTGTTCAGTGCATTACGTACGAGGTACTACATCTGTAACCCAAAATCCATTATCAACAAAGTCATCTCCGAAT</canonical>
            <polymorphic>CCAAAAATGGAGCTCACAGCTATCATCATGGGAACCAACCTAGCTATTGCTGCAAAGAAAGAAATCCCAATACCAGTAGTGGAAATCTGTTTCTTGACAGACAGTTCGATCTCATTCTTCTGGATCCTAAAAGAACATACAACTCGCCCATATGTATCCAACAGGGTAAACGATTATCATATCAATAAATCTTGGATCGAGAAGACAGGAACCGAAGTAGCTTTACTACACTGTCCGACTGAGTTCAACCCAGCCGACGCCGCTACTCGCGGACTCACCACTACCGAATACAATGAAAATCAGCAATGGCCACATGGTCCCAAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAMTACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAAGGACGAAGACGGCTTAATCCGATTCAAATCACATGTGAAATCAAGTGTACTCCCAGCAGAGACACACACCCCAATCATGATTCACAAAGATCACAAAATTGCATTCATGCTCGTAAGGGAAGCCCACGAAATCAACGGACACCTCCCAGCGGGATACCTGTTCAGTGCATTACGTACGAGGTACTACATCTGTAACCCAAAATCCATTATCAACAAAGTCATCTCCGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTCCTATTAGACGGAAGAGA</pcr_primer_p1>
		<pcr_primer_p2>GTGACAAGTTTTCTCATGCTATT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCAC</canonical_amplicon>
		<polymorphic_amplicon>AAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAMTACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29290</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>118574</contig_pos>
        <strand>+</strand>
        <context>GTTGGTAAMT[A/C]CAGYARAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAAT</left_flank>
        <right_flank>CAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATGGAGCTCACAGCTATCATCATGGGAACCAACCTAGCTATTGCTGCAAAGAAAGAAATCCCAATACCAGTAGTGGAAATCTGTTTCTTGACAGACAGTTCGATCTCATTCTTCTGGATCCTAAAAGAACATACAACTCGCCCATATGTATCCAACAGGGTAAACGATTATCATATCAATAAATCTTGGATCGAGAAGACAGGAACCGAAGTAGCTTTACTACACTGTCCGACTGAGTTCAACCCAGCCGACGCCGCTACTCGCGGACTCACCACTACCGAATACAATGAAAATCAGCAATGGCCACATGGTCCCAAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAAGGACGAAGACGGCTTAATCCGATTCAAATCACATGTGAAATCAAGTGTACTCCCAGCAGAGACACACACCCCAATCATGATTCACAAAGATCACAAAATTGCATTCATGCTCGTAAGGGAAGCCCACGAAATCAACGGACACCTCCCAGCGGGATACCTGTTCAGTGCATTACGTACGAGGTACTACATCTGTAACCCAAAATCCATTATCAACAAAGTCATCTCCGAATGT</canonical>
            <polymorphic>AAAAATGGAGCTCACAGCTATCATCATGGGAACCAACCTAGCTATTGCTGCAAAGAAAGAAATCCCAATACCAGTAGTGGAAATCTGTTTCTTGACAGACAGTTCGATCTCATTCTTCTGGATCCTAAAAGAACATACAACTCGCCCATATGTATCCAACAGGGTAAACGATTATCATATCAATAAATCTTGGATCGAGAAGACAGGAACCGAAGTAGCTTTACTACACTGTCCGACTGAGTTCAACCCAGCCGACGCCGCTACTCGCGGACTCACCACTACCGAATACAATGAAAATCAGCAATGGCCACATGGTCCCAAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATMCAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAAGGACGAAGACGGCTTAATCCGATTCAAATCACATGTGAAATCAAGTGTACTCCCAGCAGAGACACACACCCCAATCATGATTCACAAAGATCACAAAATTGCATTCATGCTCGTAAGGGAAGCCCACGAAATCAACGGACACCTCCCAGCGGGATACCTGTTCAGTGCATTACGTACGAGGTACTACATCTGTAACCCAAAATCCATTATCAACAAAGTCATCTCCGAATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTCCTATTAGACGGAAGAGA</pcr_primer_p1>
		<pcr_primer_p2>GTGACAAGTTTTCTCATGCTATT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCAC</canonical_amplicon>
		<polymorphic_amplicon>AAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATMCAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29291</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>118578</contig_pos>
        <strand>+</strand>
        <context>GTAAMTMCAG[C/T]ARAAAAACTA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAG</left_flank>
        <right_flank>AGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGAGCTCACAGCTATCATCATGGGAACCAACCTAGCTATTGCTGCAAAGAAAGAAATCCCAATACCAGTAGTGGAAATCTGTTTCTTGACAGACAGTTCGATCTCATTCTTCTGGATCCTAAAAGAACATACAACTCGCCCATATGTATCCAACAGGGTAAACGATTATCATATCAATAAATCTTGGATCGAGAAGACAGGAACCGAAGTAGCTTTACTACACTGTCCGACTGAGTTCAACCCAGCCGACGCCGCTACTCGCGGACTCACCACTACCGAATACAATGAAAATCAGCAATGGCCACATGGTCCCAAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAAGGACGAAGACGGCTTAATCCGATTCAAATCACATGTGAAATCAAGTGTACTCCCAGCAGAGACACACACCCCAATCATGATTCACAAAGATCACAAAATTGCATTCATGCTCGTAAGGGAAGCCCACGAAATCAACGGACACCTCCCAGCGGGATACCTGTTCAGTGCATTACGTACGAGGTACTACATCTGTAACCCAAAATCCATTATCAACAAAGTCATCTCCGAATGTACGA</canonical>
            <polymorphic>ATGGAGCTCACAGCTATCATCATGGGAACCAACCTAGCTATTGCTGCAAAGAAAGAAATCCCAATACCAGTAGTGGAAATCTGTTTCTTGACAGACAGTTCGATCTCATTCTTCTGGATCCTAAAAGAACATACAACTCGCCCATATGTATCCAACAGGGTAAACGATTATCATATCAATAAATCTTGGATCGAGAAGACAGGAACCGAAGTAGCTTTACTACACTGTCCGACTGAGTTCAACCCAGCCGACGCCGCTACTCGCGGACTCACCACTACCGAATACAATGAAAATCAGCAATGGCCACATGGTCCCAAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGYAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAAGGACGAAGACGGCTTAATCCGATTCAAATCACATGTGAAATCAAGTGTACTCCCAGCAGAGACACACACCCCAATCATGATTCACAAAGATCACAAAATTGCATTCATGCTCGTAAGGGAAGCCCACGAAATCAACGGACACCTCCCAGCGGGATACCTGTTCAGTGCATTACGTACGAGGTACTACATCTGTAACCCAAAATCCATTATCAACAAAGTCATCTCCGAATGTACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTCCTATTAGACGGAAGAGA</pcr_primer_p1>
		<pcr_primer_p2>GTGACAAGTTTTCTCATGCTATT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCAC</canonical_amplicon>
		<polymorphic_amplicon>AAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGYAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29292</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>118580</contig_pos>
        <strand>+</strand>
        <context>AAMTMCAGYA[A/G]AAAAACTAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAA</left_flank>
        <right_flank>AAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGCTCACAGCTATCATCATGGGAACCAACCTAGCTATTGCTGCAAAGAAAGAAATCCCAATACCAGTAGTGGAAATCTGTTTCTTGACAGACAGTTCGATCTCATTCTTCTGGATCCTAAAAGAACATACAACTCGCCCATATGTATCCAACAGGGTAAACGATTATCATATCAATAAATCTTGGATCGAGAAGACAGGAACCGAAGTAGCTTTACTACACTGTCCGACTGAGTTCAACCCAGCCGACGCCGCTACTCGCGGACTCACCACTACCGAATACAATGAAAATCAGCAATGGCCACATGGTCCCAAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAAGGACGAAGACGGCTTAATCCGATTCAAATCACATGTGAAATCAAGTGTACTCCCAGCAGAGACACACACCCCAATCATGATTCACAAAGATCACAAAATTGCATTCATGCTCGTAAGGGAAGCCCACGAAATCAACGGACACCTCCCAGCGGGATACCTGTTCAGTGCATTACGTACGAGGTACTACATCTGTAACCCAAAATCCATTATCAACAAAGTCATCTCCGAATGTACGAAA</canonical>
            <polymorphic>GGAGCTCACAGCTATCATCATGGGAACCAACCTAGCTATTGCTGCAAAGAAAGAAATCCCAATACCAGTAGTGGAAATCTGTTTCTTGACAGACAGTTCGATCTCATTCTTCTGGATCCTAAAAGAACATACAACTCGCCCATATGTATCCAACAGGGTAAACGATTATCATATCAATAAATCTTGGATCGAGAAGACAGGAACCGAAGTAGCTTTACTACACTGTCCGACTGAGTTCAACCCAGCCGACGCCGCTACTCGCGGACTCACCACTACCGAATACAATGAAAATCAGCAATGGCCACATGGTCCCAAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAARAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAAGGACGAAGACGGCTTAATCCGATTCAAATCACATGTGAAATCAAGTGTACTCCCAGCAGAGACACACACCCCAATCATGATTCACAAAGATCACAAAATTGCATTCATGCTCGTAAGGGAAGCCCACGAAATCAACGGACACCTCCCAGCGGGATACCTGTTCAGTGCATTACGTACGAGGTACTACATCTGTAACCCAAAATCCATTATCAACAAAGTCATCTCCGAATGTACGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTCCTATTAGACGGAAGAGA</pcr_primer_p1>
		<pcr_primer_p2>GTGACAAGTTTTCTCATGCTATT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCAC</canonical_amplicon>
		<polymorphic_amplicon>AAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAARAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29293</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>118639</contig_pos>
        <strand>+</strand>
        <context>AACTTGTCAC[A/G]ATTGTTCACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCAC</left_flank>
        <right_flank>ATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATACCAGTAGTGGAAATCTGTTTCTTGACAGACAGTTCGATCTCATTCTTCTGGATCCTAAAAGAACATACAACTCGCCCATATGTATCCAACAGGGTAAACGATTATCATATCAATAAATCTTGGATCGAGAAGACAGGAACCGAAGTAGCTTTACTACACTGTCCGACTGAGTTCAACCCAGCCGACGCCGCTACTCGCGGACTCACCACTACCGAATACAATGAAAATCAGCAATGGCCACATGGTCCCAAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAAGGACGAAGACGGCTTAATCCGATTCAAATCACATGTGAAATCAAGTGTACTCCCAGCAGAGACACACACCCCAATCATGATTCACAAAGATCACAAAATTGCATTCATGCTCGTAAGGGAAGCCCACGAAATCAACGGACACCTCCCAGCGGGATACCTGTTCAGTGCATTACGTACGAGGTACTACATCTGTAACCCAAAATCCATTATCAACAAAGTCATCTCCGAATGTACGAAACGCAAAAAAGTCACTGGAAAGCCTTACGCTTACCCCAACTGTCAGATACTCCCAGCCCT</canonical>
            <polymorphic>CAATACCAGTAGTGGAAATCTGTTTCTTGACAGACAGTTCGATCTCATTCTTCTGGATCCTAAAAGAACATACAACTCGCCCATATGTATCCAACAGGGTAAACGATTATCATATCAATAAATCTTGGATCGAGAAGACAGGAACCGAAGTAGCTTTACTACACTGTCCGACTGAGTTCAACCCAGCCGACGCCGCTACTCGCGGACTCACCACTACCGAATACAATGAAAATCAGCAATGGCCACATGGTCCCAAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCACRATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAAGGACGAAGACGGCTTAATCCGATTCAAATCACATGTGAAATCAAGTGTACTCCCAGCAGAGACACACACCCCAATCATGATTCACAAAGATCACAAAATTGCATTCATGCTCGTAAGGGAAGCCCACGAAATCAACGGACACCTCCCAGCGGGATACCTGTTCAGTGCATTACGTACGAGGTACTACATCTGTAACCCAAAATCCATTATCAACAAAGTCATCTCCGAATGTACGAAACGCAAAAAAGTCACTGGAAAGCCTTACGCTTACCCCAACTGTCAGATACTCCCAGCCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>321 226 201 178 74</canonical_bands>
                <polymorphic_bands>321 252 226 201</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAGAAAAAGATCACGAATC</pcr_primer_p1>
		<pcr_primer_p2>GCCATCTTTCTCCTCAGAGT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGC</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCACRATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29294</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>118655</contig_pos>
        <strand>+</strand>
        <context>TCACAAAACT[C/T]TTCTAGCAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTATAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACT</left_flank>
        <right_flank>TTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCTGTTTCTTGACAGACAGTTCGATCTCATTCTTCTGGATCCTAAAAGAACATACAACTCGCCCATATGTATCCAACAGGGTAAACGATTATCATATCAATAAATCTTGGATCGAGAAGACAGGAACCGAAGTAGCTTTACTACACTGTCCGACTGAGTTCAACCCAGCCGACGCCGCTACTCGCGGACTCACCACTACCGAATACAATGAAAATCAGCAATGGCCACATGGTCCCAAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAAGGACGAAGACGGCTTAATCCGATTCAAATCACATGTGAAATCAAGTGTACTCCCAGCAGAGACACACACCCCAATCATGATTCACAAAGATCACAAAATTGCATTCATGCTCGTAAGGGAAGCCCACGAAATCAACGGACACCTCCCAGCGGGATACCTGTTCAGTGCATTACGTACGAGGTACTACATCTGTAACCCAAAATCCATTATCAACAAAGTCATCTCCGAATGTACGAAACGCAAAAAAGTCACTGGAAAGCCTTACGCTTACCCCAACTGTCAGATACTCCCAGCCCTACGAACAGAGCCATCA</canonical>
            <polymorphic>AATCTGTTTCTTGACAGACAGTTCGATCTCATTCTTCTGGATCCTAAAAGAACATACAACTCGCCCATATGTATCCAACAGGGTAAACGATTATCATATCAATAAATCTTGGATCGAGAAGACAGGAACCGAAGTAGCTTTACTACACTGTCCGACTGAGTTCAACCCAGCCGACGCCGCTACTCGCGGACTCACCACTACCGAATACAATGAAAATCAGCAATGGCCACATGGTCCCAAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTYTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAAGGACGAAGACGGCTTAATCCGATTCAAATCACATGTGAAATCAAGTGTACTCCCAGCAGAGACACACACCCCAATCATGATTCACAAAGATCACAAAATTGCATTCATGCTCGTAAGGGAAGCCCACGAAATCAACGGACACCTCCCAGCGGGATACCTGTTCAGTGCATTACGTACGAGGTACTACATCTGTAACCCAAAATCCATTATCAACAAAGTCATCTCCGAATGTACGAAACGCAAAAAAGTCACTGGAAAGCCTTACGCTTACCCCAACTGTCAGATACTCCCAGCCCTACGAACAGAGCCATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAGAAAAAGATCACGAATC</pcr_primer_p1>
		<pcr_primer_p2>GCCATCTTTCTCCTCAGAGT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGC</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTYTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29295</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>118675</contig_pos>
        <strand>+</strand>
        <context>TCTGCAAAGC[A/C]TTYCCAAACC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGC</left_flank>
        <right_flank>TTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCGATCTCATTCTTCTGGATCCTAAAAGAACATACAACTCGCCCATATGTATCCAACAGGGTAAACGATTATCATATCAATAAATCTTGGATCGAGAAGACAGGAACCGAAGTAGCTTTACTACACTGTCCGACTGAGTTCAACCCAGCCGACGCCGCTACTCGCGGACTCACCACTACCGAATACAATGAAAATCAGCAATGGCCACATGGTCCCAAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAAGGACGAAGACGGCTTAATCCGATTCAAATCACATGTGAAATCAAGTGTACTCCCAGCAGAGACACACACCCCAATCATGATTCACAAAGATCACAAAATTGCATTCATGCTCGTAAGGGAAGCCCACGAAATCAACGGACACCTCCCAGCGGGATACCTGTTCAGTGCATTACGTACGAGGTACTACATCTGTAACCCAAAATCCATTATCAACAAAGTCATCTCCGAATGTACGAAACGCAAAAAAGTCACTGGAAAGCCTTACGCTTACCCCAACTGTCAGATACTCCCAGCCCTACGAACAGAGCCATCATTTCCATTCGAAAAAGCCGG</canonical>
            <polymorphic>GTTCGATCTCATTCTTCTGGATCCTAAAAGAACATACAACTCGCCCATATGTATCCAACAGGGTAAACGATTATCATATCAATAAATCTTGGATCGAGAAGACAGGAACCGAAGTAGCTTTACTACACTGTCCGACTGAGTTCAACCCAGCCGACGCCGCTACTCGCGGACTCACCACTACCGAATACAATGAAAATCAGCAATGGCCACATGGTCCCAAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCMTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAAGGACGAAGACGGCTTAATCCGATTCAAATCACATGTGAAATCAAGTGTACTCCCAGCAGAGACACACACCCCAATCATGATTCACAAAGATCACAAAATTGCATTCATGCTCGTAAGGGAAGCCCACGAAATCAACGGACACCTCCCAGCGGGATACCTGTTCAGTGCATTACGTACGAGGTACTACATCTGTAACCCAAAATCCATTATCAACAAAGTCATCTCCGAATGTACGAAACGCAAAAAAGTCACTGGAAAGCCTTACGCTTACCCCAACTGTCAGATACTCCCAGCCCTACGAACAGAGCCATCATTTCCATTCGAAAAAGCCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>137 127 123 117 110 65 58 58 56 42 34 33 22 14 4</canonical_bands>
                <polymorphic_bands>188 137 127 117 110 58 58 56 42 34 33 22 14 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGAACCAATAGCATGAGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGGTACGTATGTCAGATG</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>TAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCMTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29296</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>118678</contig_pos>
        <strand>+</strand>
        <context>GCAAAGCMTT[C/T]CCAAACCATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTT</left_flank>
        <right_flank>CCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATCTCATTCTTCTGGATCCTAAAAGAACATACAACTCGCCCATATGTATCCAACAGGGTAAACGATTATCATATCAATAAATCTTGGATCGAGAAGACAGGAACCGAAGTAGCTTTACTACACTGTCCGACTGAGTTCAACCCAGCCGACGCCGCTACTCGCGGACTCACCACTACCGAATACAATGAAAATCAGCAATGGCCACATGGTCCCAAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAAGGACGAAGACGGCTTAATCCGATTCAAATCACATGTGAAATCAAGTGTACTCCCAGCAGAGACACACACCCCAATCATGATTCACAAAGATCACAAAATTGCATTCATGCTCGTAAGGGAAGCCCACGAAATCAACGGACACCTCCCAGCGGGATACCTGTTCAGTGCATTACGTACGAGGTACTACATCTGTAACCCAAAATCCATTATCAACAAAGTCATCTCCGAATGTACGAAACGCAAAAAAGTCACTGGAAAGCCTTACGCTTACCCCAACTGTCAGATACTCCCAGCCCTACGAACAGAGCCATCATTTCCATTCGAAAAAGCCGGATT</canonical>
            <polymorphic>CGATCTCATTCTTCTGGATCCTAAAAGAACATACAACTCGCCCATATGTATCCAACAGGGTAAACGATTATCATATCAATAAATCTTGGATCGAGAAGACAGGAACCGAAGTAGCTTTACTACACTGTCCGACTGAGTTCAACCCAGCCGACGCCGCTACTCGCGGACTCACCACTACCGAATACAATGAAAATCAGCAATGGCCACATGGTCCCAAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTYCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAAGGACGAAGACGGCTTAATCCGATTCAAATCACATGTGAAATCAAGTGTACTCCCAGCAGAGACACACACCCCAATCATGATTCACAAAGATCACAAAATTGCATTCATGCTCGTAAGGGAAGCCCACGAAATCAACGGACACCTCCCAGCGGGATACCTGTTCAGTGCATTACGTACGAGGTACTACATCTGTAACCCAAAATCCATTATCAACAAAGTCATCTCCGAATGTACGAAACGCAAAAAAGTCACTGGAAAGCCTTACGCTTACCCCAACTGTCAGATACTCCCAGCCCTACGAACAGAGCCATCATTTCCATTCGAAAAAGCCGGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAACCAATAGCATGAGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGGTACGTATGTCAGATG</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>TAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTYCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29297</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>118712</contig_pos>
        <strand>+</strand>
        <context>CGTGATGAAA[A/C]AATTCACAAR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAA</left_flank>
        <right_flank>AATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTCGCCCATATGTATCCAACAGGGTAAACGATTATCATATCAATAAATCTTGGATCGAGAAGACAGGAACCGAAGTAGCTTTACTACACTGTCCGACTGAGTTCAACCCAGCCGACGCCGCTACTCGCGGACTCACCACTACCGAATACAATGAAAATCAGCAATGGCCACATGGTCCCAAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAAGGACGAAGACGGCTTAATCCGATTCAAATCACATGTGAAATCAAGTGTACTCCCAGCAGAGACACACACCCCAATCATGATTCACAAAGATCACAAAATTGCATTCATGCTCGTAAGGGAAGCCCACGAAATCAACGGACACCTCCCAGCGGGATACCTGTTCAGTGCATTACGTACGAGGTACTACATCTGTAACCCAAAATCCATTATCAACAAAGTCATCTCCGAATGTACGAAACGCAAAAAAGTCACTGGAAAGCCTTACGCTTACCCCAACTGTCAGATACTCCCAGCCCTACGAACAGAGCCATCATTTCCATTCGAAAAAGCCGGATTAGACTATCTAGGTCCAATCCAGTATATCAAAGAA</canonical>
            <polymorphic>AACTCGCCCATATGTATCCAACAGGGTAAACGATTATCATATCAATAAATCTTGGATCGAGAAGACAGGAACCGAAGTAGCTTTACTACACTGTCCGACTGAGTTCAACCCAGCCGACGCCGCTACTCGCGGACTCACCACTACCGAATACAATGAAAATCAGCAATGGCCACATGGTCCCAAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAMAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAAGGACGAAGACGGCTTAATCCGATTCAAATCACATGTGAAATCAAGTGTACTCCCAGCAGAGACACACACCCCAATCATGATTCACAAAGATCACAAAATTGCATTCATGCTCGTAAGGGAAGCCCACGAAATCAACGGACACCTCCCAGCGGGATACCTGTTCAGTGCATTACGTACGAGGTACTACATCTGTAACCCAAAATCCATTATCAACAAAGTCATCTCCGAATGTACGAAACGCAAAAAAGTCACTGGAAAGCCTTACGCTTACCCCAACTGTCAGATACTCCCAGCCCTACGAACAGAGCCATCATTTCCATTCGAAAAAGCCGGATTAGACTATCTAGGTCCAATCCAGTATATCAAAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>500 252 248</canonical_bands>
                <polymorphic_bands>752 248</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGAACCAATAGCATGAGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGGTACGTATGTCAGATG</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>TAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAMAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29298</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>118722</contig_pos>
        <strand>+</strand>
        <context>MAATTCACAA[A/G]MGAGTCAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAA</left_flank>
        <right_flank>CGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGTATCCAACAGGGTAAACGATTATCATATCAATAAATCTTGGATCGAGAAGACAGGAACCGAAGTAGCTTTACTACACTGTCCGACTGAGTTCAACCCAGCCGACGCCGCTACTCGCGGACTCACCACTACCGAATACAATGAAAATCAGCAATGGCCACATGGTCCCAAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAAGGACGAAGACGGCTTAATCCGATTCAAATCACATGTGAAATCAAGTGTACTCCCAGCAGAGACACACACCCCAATCATGATTCACAAAGATCACAAAATTGCATTCATGCTCGTAAGGGAAGCCCACGAAATCAACGGACACCTCCCAGCGGGATACCTGTTCAGTGCATTACGTACGAGGTACTACATCTGTAACCCAAAATCCATTATCAACAAAGTCATCTCCGAATGTACGAAACGCAAAAAAGTCACTGGAAAGCCTTACGCTTACCCCAACTGTCAGATACTCCCAGCCCTACGAACAGAGCCATCATTTCCATTCGAAAAAGCCGGATTAGACTATCTAGGTCCAATCCAGTATATCAAAGAAGATGGATCAA</canonical>
            <polymorphic>TATGTATCCAACAGGGTAAACGATTATCATATCAATAAATCTTGGATCGAGAAGACAGGAACCGAAGTAGCTTTACTACACTGTCCGACTGAGTTCAACCCAGCCGACGCCGCTACTCGCGGACTCACCACTACCGAATACAATGAAAATCAGCAATGGCCACATGGTCCCAAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAARCGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAAGGACGAAGACGGCTTAATCCGATTCAAATCACATGTGAAATCAAGTGTACTCCCAGCAGAGACACACACCCCAATCATGATTCACAAAGATCACAAAATTGCATTCATGCTCGTAAGGGAAGCCCACGAAATCAACGGACACCTCCCAGCGGGATACCTGTTCAGTGCATTACGTACGAGGTACTACATCTGTAACCCAAAATCCATTATCAACAAAGTCATCTCCGAATGTACGAAACGCAAAAAAGTCACTGGAAAGCCTTACGCTTACCCCAACTGTCAGATACTCCCAGCCCTACGAACAGAGCCATCATTTCCATTCGAAAAAGCCGGATTAGACTATCTAGGTCCAATCCAGTATATCAAAGAAGATGGATCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAACCAATAGCATGAGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGGTACGTATGTCAGATG</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>TAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAARCGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29299</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>118723</contig_pos>
        <strand>+</strand>
        <context>AATTCACAAR[A/C]GAGTCAGAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAA</left_flank>
        <right_flank>GAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTATCCAACAGGGTAAACGATTATCATATCAATAAATCTTGGATCGAGAAGACAGGAACCGAAGTAGCTTTACTACACTGTCCGACTGAGTTCAACCCAGCCGACGCCGCTACTCGCGGACTCACCACTACCGAATACAATGAAAATCAGCAATGGCCACATGGTCCCAAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAAGGACGAAGACGGCTTAATCCGATTCAAATCACATGTGAAATCAAGTGTACTCCCAGCAGAGACACACACCCCAATCATGATTCACAAAGATCACAAAATTGCATTCATGCTCGTAAGGGAAGCCCACGAAATCAACGGACACCTCCCAGCGGGATACCTGTTCAGTGCATTACGTACGAGGTACTACATCTGTAACCCAAAATCCATTATCAACAAAGTCATCTCCGAATGTACGAAACGCAAAAAAGTCACTGGAAAGCCTTACGCTTACCCCAACTGTCAGATACTCCCAGCCCTACGAACAGAGCCATCATTTCCATTCGAAAAAGCCGGATTAGACTATCTAGGTCCAATCCAGTATATCAAAGAAGATGGATCAAT</canonical>
            <polymorphic>ATGTATCCAACAGGGTAAACGATTATCATATCAATAAATCTTGGATCGAGAAGACAGGAACCGAAGTAGCTTTACTACACTGTCCGACTGAGTTCAACCCAGCCGACGCCGCTACTCGCGGACTCACCACTACCGAATACAATGAAAATCAGCAATGGCCACATGGTCCCAAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAAMGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAAGGACGAAGACGGCTTAATCCGATTCAAATCACATGTGAAATCAAGTGTACTCCCAGCAGAGACACACACCCCAATCATGATTCACAAAGATCACAAAATTGCATTCATGCTCGTAAGGGAAGCCCACGAAATCAACGGACACCTCCCAGCGGGATACCTGTTCAGTGCATTACGTACGAGGTACTACATCTGTAACCCAAAATCCATTATCAACAAAGTCATCTCCGAATGTACGAAACGCAAAAAAGTCACTGGAAAGCCTTACGCTTACCCCAACTGTCAGATACTCCCAGCCCTACGAACAGAGCCATCATTTCCATTCGAAAAAGCCGGATTAGACTATCTAGGTCCAATCCAGTATATCAAAGAAGATGGATCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAACCAATAGCATGAGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGGTACGTATGTCAGATG</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>TAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAAMGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29300</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>118783</contig_pos>
        <strand>+</strand>
        <context>CCATCCAACA[C/G]CACTACATTG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACA</left_flank>
        <right_flank>CACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGAAGTAGCTTTACTACACTGTCCGACTGAGTTCAACCCAGCCGACGCCGCTACTCGCGGACTCACCACTACCGAATACAATGAAAATCAGCAATGGCCACATGGTCCCAAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAAGGACGAAGACGGCTTAATCCGATTCAAATCACATGTGAAATCAAGTGTACTCCCAGCAGAGACACACACCCCAATCATGATTCACAAAGATCACAAAATTGCATTCATGCTCGTAAGGGAAGCCCACGAAATCAACGGACACCTCCCAGCGGGATACCTGTTCAGTGCATTACGTACGAGGTACTACATCTGTAACCCAAAATCCATTATCAACAAAGTCATCTCCGAATGTACGAAACGCAAAAAAGTCACTGGAAAGCCTTACGCTTACCCCAACTGTCAGATACTCCCAGCCCTACGAACAGAGCCATCATTTCCATTCGAAAAAGCCGGATTAGACTATCTAGGTCCAATCCAGTATATCAAAGAAGATGGATCAATCGGAAGCTGCTATGTACTAGTCTATACATGCTTGGTTACACGAGGAGCTCGACTCGAACT</canonical>
            <polymorphic>CCGAAGTAGCTTTACTACACTGTCCGACTGAGTTCAACCCAGCCGACGCCGCTACTCGCGGACTCACCACTACCGAATACAATGAAAATCAGCAATGGCCACATGGTCCCAAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACASCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAAGGACGAAGACGGCTTAATCCGATTCAAATCACATGTGAAATCAAGTGTACTCCCAGCAGAGACACACACCCCAATCATGATTCACAAAGATCACAAAATTGCATTCATGCTCGTAAGGGAAGCCCACGAAATCAACGGACACCTCCCAGCGGGATACCTGTTCAGTGCATTACGTACGAGGTACTACATCTGTAACCCAAAATCCATTATCAACAAAGTCATCTCCGAATGTACGAAACGCAAAAAAGTCACTGGAAAGCCTTACGCTTACCCCAACTGTCAGATACTCCCAGCCCTACGAACAGAGCCATCATTTCCATTCGAAAAAGCCGGATTAGACTATCTAGGTCCAATCCAGTATATCAAAGAAGATGGATCAATCGGAAGCTGCTATGTACTAGTCTATACATGCTTGGTTACACGAGGAGCTCGACTCGAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAACCAATAGCATGAGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGGTACGTATGTCAGATG</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>TAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACASCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29301</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>118812</contig_pos>
        <strand>+</strand>
        <context>GAACAAGGTC[C/T]CTCATTCCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTC</left_flank>
        <right_flank>CTCATTCCCATCTGACATACGTACCTTCAAGGACGAAGACGGCTTAATCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTTCAACCCAGCCGACGCCGCTACTCGCGGACTCACCACTACCGAATACAATGAAAATCAGCAATGGCCACATGGTCCCAAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAAGGACGAAGACGGCTTAATCCGATTCAAATCACATGTGAAATCAAGTGTACTCCCAGCAGAGACACACACCCCAATCATGATTCACAAAGATCACAAAATTGCATTCATGCTCGTAAGGGAAGCCCACGAAATCAACGGACACCTCCCAGCGGGATACCTGTTCAGTGCATTACGTACGAGGTACTACATCTGTAACCCAAAATCCATTATCAACAAAGTCATCTCCGAATGTACGAAACGCAAAAAAGTCACTGGAAAGCCTTACGCTTACCCCAACTGTCAGATACTCCCAGCCCTACGAACAGAGCCATCATTTCCATTCGAAAAAGCCGGATTAGACTATCTAGGTCCAATCCAGTATATCAAAGAAGATGGATCAATCGGAAGCTGCTATGTACTAGTCTATACATGCTTGGTTACACGAGGAGCTCGACTCGAACTCGTTCCAGATGGAACCACTGAAAGATACA</canonical>
            <polymorphic>GAGTTCAACCCAGCCGACGCCGCTACTCGCGGACTCACCACTACCGAATACAATGAAAATCAGCAATGGCCACATGGTCCCAAGTTCCTATTAGACGGAAGAGAAGAATGGCCAAACAAGATCGAAGGATCAATCACTAATGTGAAAGAATTCCACGATCTAGTATTTCAAGAGATTGTCGATCCGGTTACTCAAAAGAGAAAAAGATCACGAATCCCGAAACCGGATCCGCCCAAAGCTGAAACGATCATGTTGGTAAATACAGAAGAAAAACTAACCTCCATCGTTCCGTTCTATAGAACCAATAGCATGAGAAAACTTGTCACAATTGTTCACAAAACTCTTCTAGCAGTCTGCAAAGCCTTCCCAAACCATCAATGGGAATCGTTCGTGATGAAAAAATTCACAAACGAGTCAGAAGATCAGCCGACTCTGAGGAGAAAGATGGCAAGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCYCTCATTCCCATCTGACATACGTACCTTCAAGGACGAAGACGGCTTAATCCGATTCAAATCACATGTGAAATCAAGTGTACTCCCAGCAGAGACACACACCCCAATCATGATTCACAAAGATCACAAAATTGCATTCATGCTCGTAAGGGAAGCCCACGAAATCAACGGACACCTCCCAGCGGGATACCTGTTCAGTGCATTACGTACGAGGTACTACATCTGTAACCCAAAATCCATTATCAACAAAGTCATCTCCGAATGTACGAAACGCAAAAAAGTCACTGGAAAGCCTTACGCTTACCCCAACTGTCAGATACTCCCAGCCCTACGAACAGAGCCATCATTTCCATTCGAAAAAGCCGGATTAGACTATCTAGGTCCAATCCAGTATATCAAAGAAGATGGATCAATCGGAAGCTGCTATGTACTAGTCTATACATGCTTGGTTACACGAGGAGCTCGACTCGAACTCGTTCCAGATGGAACCACTGAAAGATACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAACATTCACCATCCAACA</pcr_primer_p1>
		<pcr_primer_p2>TAATGCACTGAACAGGTATCC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCTCTCATTCCCATCTGACATACGTACCTTCAAGGACGAAGACGGCTTAATCCGATTCAAATCACATGTGAAATCAAGTGTACTCCCAGCAGAGACACACACCCCAATCATGATTCACAAAGATCACAAAATTGCATTCATGCTCGTAAGGGAAGCCCACGAAATCAACGGACACCTCCCAGCGGGATACCTGTTCAGTGCATTA</canonical_amplicon>
		<polymorphic_amplicon>AGAACATTCACCATCCAACAGCACTACATTGAAGCCGACGAACAAGGTCYCTCATTCCCATCTGACATACGTACCTTCAAGGACGAAGACGGCTTAATCCGATTCAAATCACATGTGAAATCAAGTGTACTCCCAGCAGAGACACACACCCCAATCATGATTCACAAAGATCACAAAATTGCATTCATGCTCGTAAGGGAAGCCCACGAAATCAACGGACACCTCCCAGCGGGATACCTGTTCAGTGCATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29302</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>120603</contig_pos>
        <strand>+</strand>
        <context>GTTTTAATCG[G/T]GTCATATTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTCTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCG</left_flank>
        <right_flank>GTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACAATGAGAATACAGATGAGGATCCCGGATACAAGTCTATCCCGAATCCACCACTACCTGCAACCTTCGATATTCCACAAGCTGAGTACGCTCCAAAGCGATTCAAAGATTCCAAGCAAAACTTTGTGCCAAGTGCTGGTAACCTCCCAACTATCGGAGAACGTGATCCCGAAGAGGAAATCAATTATGACACCCAGCATCTGGACACGGAGCCAGCAGACGGAGAATACAGAGACCCAAATGCAACAGCAAAGCAGATTATGGACTACGGTAAAAATAATGTACCTGATACAAGGACAAGAGAGTACCTACCAAGGAAAGCGAAAGCACCTTACATCAACTATGTCCATGCTACAGTAGTCTCTTCGTCTGGGGCCCGGCCCCCCAATGTTGTCAATTTTCCCCATTATCTTGGGACACTGACAACTTGAAAACGCTATAACCCAGAGTCTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGG</canonical>
            <polymorphic>GACAATGAGAATACAGATGAGGATCCCGGATACAAGTCTATCCCGAATCCACCACTACCTGCAACCTTCGATATTCCACAAGCTGAGTACGCTCCAAAGCGATTCAAAGATTCCAAGCAAAACTTTGTGCCAAGTGCTGGTAACCTCCCAACTATCGGAGAACGTGATCCCGAAGAGGAAATCAATTATGACACCCAGCATCTGGACACGGAGCCAGCAGACGGAGAATACAGAGACCCAAATGCAACAGCAAAGCAGATTATGGACTACGGTAAAAATAATGTACCTGATACAAGGACAAGAGAGTACCTACCAAGGAAAGCGAAAGCACCTTACATCAACTATGTCCATGCTACAGTAGTCTCTTCGTCTGGGGCCCGGCCCCCCAATGTTGTCAATTTTCCCCATTATCTTGGGACACTGACAACTTGAAAACGCTATAACCCAGAGTCTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGKGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACGCTATAACCCAGAGTC</pcr_primer_p1>
		<pcr_primer_p2>GTCAGAAAAGGGGAGATACC</pcr_primer_p2>
		<pcr_amplicon_size>281</pcr_amplicon_size>
		<canonical_amplicon>AAAACGCTATAACCCAGAGTCTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGAC</canonical_amplicon>
		<polymorphic_amplicon>AAAACGCTATAACCCAGAGTCTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGKGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29303</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>120639</contig_pos>
        <strand>+</strand>
        <context>CACTCCGTTC[A/T]CYAAWCACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTC</left_flank>
        <right_flank>CCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTATCCCGAATCCACCACTACCTGCAACCTTCGATATTCCACAAGCTGAGTACGCTCCAAAGCGATTCAAAGATTCCAAGCAAAACTTTGTGCCAAGTGCTGGTAACCTCCCAACTATCGGAGAACGTGATCCCGAAGAGGAAATCAATTATGACACCCAGCATCTGGACACGGAGCCAGCAGACGGAGAATACAGAGACCCAAATGCAACAGCAAAGCAGATTATGGACTACGGTAAAAATAATGTACCTGATACAAGGACAAGAGAGTACCTACCAAGGAAAGCGAAAGCACCTTACATCAACTATGTCCATGCTACAGTAGTCTCTTCGTCTGGGGCCCGGCCCCCCAATGTTGTCAATTTTCCCCATTATCTTGGGACACTGACAACTTGAAAACGCTATAACCCAGAGTCTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGA</canonical>
            <polymorphic>TCTATCCCGAATCCACCACTACCTGCAACCTTCGATATTCCACAAGCTGAGTACGCTCCAAAGCGATTCAAAGATTCCAAGCAAAACTTTGTGCCAAGTGCTGGTAACCTCCCAACTATCGGAGAACGTGATCCCGAAGAGGAAATCAATTATGACACCCAGCATCTGGACACGGAGCCAGCAGACGGAGAATACAGAGACCCAAATGCAACAGCAAAGCAGATTATGGACTACGGTAAAAATAATGTACCTGATACAAGGACAAGAGAGTACCTACCAAGGAAAGCGAAAGCACCTTACATCAACTATGTCCATGCTACAGTAGTCTCTTCGTCTGGGGCCCGGCCCCCCAATGTTGTCAATTTTCCCCATTATCTTGGGACACTGACAACTTGAAAACGCTATAACCCAGAGTCTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCWCCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>122 109 105 103 90 76 52 51 51 33 30 27 24 19 15 15 14 12 9 8 7 7 6 6 4 3 2</canonical_bands>
                <polymorphic_bands>122 109 105 103 90 76 52 51 51 33 30 27 24 19 16 15 15 14 12 8 7 6 6 4 3 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 392 63 26 21</canonical_bands>
                <polymorphic_bands>524 392 63 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTCTGGATTATCCGTTTTA</pcr_primer_p1>
		<pcr_primer_p2>GGTCAGAAAAGGGGAGATAC</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>CCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACC</canonical_amplicon>
		<polymorphic_amplicon>CCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCWCCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29304</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>120641</contig_pos>
        <strand>+</strand>
        <context>CTCCGTTCWC[C/T]AAWCACAATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCAC</left_flank>
        <right_flank>AATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCCCGAATCCACCACTACCTGCAACCTTCGATATTCCACAAGCTGAGTACGCTCCAAAGCGATTCAAAGATTCCAAGCAAAACTTTGTGCCAAGTGCTGGTAACCTCCCAACTATCGGAGAACGTGATCCCGAAGAGGAAATCAATTATGACACCCAGCATCTGGACACGGAGCCAGCAGACGGAGAATACAGAGACCCAAATGCAACAGCAAAGCAGATTATGGACTACGGTAAAAATAATGTACCTGATACAAGGACAAGAGAGTACCTACCAAGGAAAGCGAAAGCACCTTACATCAACTATGTCCATGCTACAGTAGTCTCTTCGTCTGGGGCCCGGCCCCCCAATGTTGTCAATTTTCCCCATTATCTTGGGACACTGACAACTTGAAAACGCTATAACCCAGAGTCTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACG</canonical>
            <polymorphic>TATCCCGAATCCACCACTACCTGCAACCTTCGATATTCCACAAGCTGAGTACGCTCCAAAGCGATTCAAAGATTCCAAGCAAAACTTTGTGCCAAGTGCTGGTAACCTCCCAACTATCGGAGAACGTGATCCCGAAGAGGAAATCAATTATGACACCCAGCATCTGGACACGGAGCCAGCAGACGGAGAATACAGAGACCCAAATGCAACAGCAAAGCAGATTATGGACTACGGTAAAAATAATGTACCTGATACAAGGACAAGAGAGTACCTACCAAGGAAAGCGAAAGCACCTTACATCAACTATGTCCATGCTACAGTAGTCTCTTCGTCTGGGGCCCGGCCCCCCAATGTTGTCAATTTTCCCCATTATCTTGGGACACTGACAACTTGAAAACGCTATAACCCAGAGTCTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACYAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTCTGGATTATCCGTTTTA</pcr_primer_p1>
		<pcr_primer_p2>GGTCAGAAAAGGGGAGATAC</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>CCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACC</canonical_amplicon>
		<polymorphic_amplicon>CCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACYAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29305</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>120644</contig_pos>
        <strand>+</strand>
        <context>CGTTCWCYAA[A/T]CACAATCAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAA</left_flank>
        <right_flank>CACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCGAATCCACCACTACCTGCAACCTTCGATATTCCACAAGCTGAGTACGCTCCAAAGCGATTCAAAGATTCCAAGCAAAACTTTGTGCCAAGTGCTGGTAACCTCCCAACTATCGGAGAACGTGATCCCGAAGAGGAAATCAATTATGACACCCAGCATCTGGACACGGAGCCAGCAGACGGAGAATACAGAGACCCAAATGCAACAGCAAAGCAGATTATGGACTACGGTAAAAATAATGTACCTGATACAAGGACAAGAGAGTACCTACCAAGGAAAGCGAAAGCACCTTACATCAACTATGTCCATGCTACAGTAGTCTCTTCGTCTGGGGCCCGGCCCCCCAATGTTGTCAATTTTCCCCATTATCTTGGGACACTGACAACTTGAAAACGCTATAACCCAGAGTCTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTG</canonical>
            <polymorphic>CCCGAATCCACCACTACCTGCAACCTTCGATATTCCACAAGCTGAGTACGCTCCAAAGCGATTCAAAGATTCCAAGCAAAACTTTGTGCCAAGTGCTGGTAACCTCCCAACTATCGGAGAACGTGATCCCGAAGAGGAAATCAATTATGACACCCAGCATCTGGACACGGAGCCAGCAGACGGAGAATACAGAGACCCAAATGCAACAGCAAAGCAGATTATGGACTACGGTAAAAATAATGTACCTGATACAAGGACAAGAGAGTACCTACCAAGGAAAGCGAAAGCACCTTACATCAACTATGTCCATGCTACAGTAGTCTCTTCGTCTGGGGCCCGGCCCCCCAATGTTGTCAATTTTCCCCATTATCTTGGGACACTGACAACTTGAAAACGCTATAACCCAGAGTCTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAAWCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTCTGGATTATCCGTTTTA</pcr_primer_p1>
		<pcr_primer_p2>GGTCAGAAAAGGGGAGATAC</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>CCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACC</canonical_amplicon>
		<polymorphic_amplicon>CCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAAWCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29306</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>120740</contig_pos>
        <strand>+</strand>
        <context>TTGGCGCCGA[C/G]ATGAGCGGCG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGA</left_flank>
        <right_flank>ATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTAACCTCCCAACTATCGGAGAACGTGATCCCGAAGAGGAAATCAATTATGACACCCAGCATCTGGACACGGAGCCAGCAGACGGAGAATACAGAGACCCAAATGCAACAGCAAAGCAGATTATGGACTACGGTAAAAATAATGTACCTGATACAAGGACAAGAGAGTACCTACCAAGGAAAGCGAAAGCACCTTACATCAACTATGTCCATGCTACAGTAGTCTCTTCGTCTGGGGCCCGGCCCCCCAATGTTGTCAATTTTCCCCATTATCTTGGGACACTGACAACTTGAAAACGCTATAACCCAGAGTCTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGACTGACCTCGGATCCACTGTCAACAGATATGGTCGCCTCAATTGTTACAATTTTTGAAAGCCGTTTTTATACAGTATGCAAATTC</canonical>
            <polymorphic>TGGTAACCTCCCAACTATCGGAGAACGTGATCCCGAAGAGGAAATCAATTATGACACCCAGCATCTGGACACGGAGCCAGCAGACGGAGAATACAGAGACCCAAATGCAACAGCAAAGCAGATTATGGACTACGGTAAAAATAATGTACCTGATACAAGGACAAGAGAGTACCTACCAAGGAAAGCGAAAGCACCTTACATCAACTATGTCCATGCTACAGTAGTCTCTTCGTCTGGGGCCCGGCCCCCCAATGTTGTCAATTTTCCCCATTATCTTGGGACACTGACAACTTGAAAACGCTATAACCCAGAGTCTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGASATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGACTGACCTCGGATCCACTGTCAACAGATATGGTCGCCTCAATTGTTACAATTTTTGAAAGCCGTTTTTATACAGTATGCAAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCAATTGTTTCGTTCACTAAC</pcr_primer_p1>
		<pcr_primer_p2>GCTAGCAAAACCATAACACTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGC</canonical_amplicon>
		<polymorphic_amplicon>AATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGASATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29307</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>120765</contig_pos>
        <strand>+</strand>
        <context>CCGCGCACGC[A/T]CACASACGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGC</left_flank>
        <right_flank>CACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTGATCCCGAAGAGGAAATCAATTATGACACCCAGCATCTGGACACGGAGCCAGCAGACGGAGAATACAGAGACCCAAATGCAACAGCAAAGCAGATTATGGACTACGGTAAAAATAATGTACCTGATACAAGGACAAGAGAGTACCTACCAAGGAAAGCGAAAGCACCTTACATCAACTATGTCCATGCTACAGTAGTCTCTTCGTCTGGGGCCCGGCCCCCCAATGTTGTCAATTTTCCCCATTATCTTGGGACACTGACAACTTGAAAACGCTATAACCCAGAGTCTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGACTGACCTCGGATCCACTGTCAACAGATATGGTCGCCTCAATTGTTACAATTTTTGAAAGCCGTTTTTATACAGTATGCAAATTCGCCTGGAAGCCTTACTGGAAACGTT</canonical>
            <polymorphic>CGTGATCCCGAAGAGGAAATCAATTATGACACCCAGCATCTGGACACGGAGCCAGCAGACGGAGAATACAGAGACCCAAATGCAACAGCAAAGCAGATTATGGACTACGGTAAAAATAATGTACCTGATACAAGGACAAGAGAGTACCTACCAAGGAAAGCGAAAGCACCTTACATCAACTATGTCCATGCTACAGTAGTCTCTTCGTCTGGGGCCCGGCCCCCCAATGTTGTCAATTTTCCCCATTATCTTGGGACACTGACAACTTGAAAACGCTATAACCCAGAGTCTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCWCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGACTGACCTCGGATCCACTGTCAACAGATATGGTCGCCTCAATTGTTACAATTTTTGAAAGCCGTTTTTATACAGTATGCAAATTCGCCTGGAAGCCTTACTGGAAACGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCAATTGTTTCGTTCACTAAC</pcr_primer_p1>
		<pcr_primer_p2>GCTAGCAAAACCATAACACTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGC</canonical_amplicon>
		<polymorphic_amplicon>AATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCWCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29308</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>120770</contig_pos>
        <strand>+</strand>
        <context>CACGCWCACA[C/G]ACGAATTGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACA</left_flank>
        <right_flank>ACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCCGAAGAGGAAATCAATTATGACACCCAGCATCTGGACACGGAGCCAGCAGACGGAGAATACAGAGACCCAAATGCAACAGCAAAGCAGATTATGGACTACGGTAAAAATAATGTACCTGATACAAGGACAAGAGAGTACCTACCAAGGAAAGCGAAAGCACCTTACATCAACTATGTCCATGCTACAGTAGTCTCTTCGTCTGGGGCCCGGCCCCCCAATGTTGTCAATTTTCCCCATTATCTTGGGACACTGACAACTTGAAAACGCTATAACCCAGAGTCTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGACTGACCTCGGATCCACTGTCAACAGATATGGTCGCCTCAATTGTTACAATTTTTGAAAGCCGTTTTTATACAGTATGCAAATTCGCCTGGAAGCCTTACTGGAAACGTTGGCGT</canonical>
            <polymorphic>TCCCGAAGAGGAAATCAATTATGACACCCAGCATCTGGACACGGAGCCAGCAGACGGAGAATACAGAGACCCAAATGCAACAGCAAAGCAGATTATGGACTACGGTAAAAATAATGTACCTGATACAAGGACAAGAGAGTACCTACCAAGGAAAGCGAAAGCACCTTACATCAACTATGTCCATGCTACAGTAGTCTCTTCGTCTGGGGCCCGGCCCCCCAATGTTGTCAATTTTCCCCATTATCTTGGGACACTGACAACTTGAAAACGCTATAACCCAGAGTCTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACASACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGACTGACCTCGGATCCACTGTCAACAGATATGGTCGCCTCAATTGTTACAATTTTTGAAAGCCGTTTTTATACAGTATGCAAATTCGCCTGGAAGCCTTACTGGAAACGTTGGCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCAATTGTTTCGTTCACTAAC</pcr_primer_p1>
		<pcr_primer_p2>GCTAGCAAAACCATAACACTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGC</canonical_amplicon>
		<polymorphic_amplicon>AATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACASACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29309</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>120789</contig_pos>
        <strand>+</strand>
        <context>TTCGTATCAG[A/G]GAGACGGGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAG</left_flank>
        <right_flank>GAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGACACCCAGCATCTGGACACGGAGCCAGCAGACGGAGAATACAGAGACCCAAATGCAACAGCAAAGCAGATTATGGACTACGGTAAAAATAATGTACCTGATACAAGGACAAGAGAGTACCTACCAAGGAAAGCGAAAGCACCTTACATCAACTATGTCCATGCTACAGTAGTCTCTTCGTCTGGGGCCCGGCCCCCCAATGTTGTCAATTTTCCCCATTATCTTGGGACACTGACAACTTGAAAACGCTATAACCCAGAGTCTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGACTGACCTCGGATCCACTGTCAACAGATATGGTCGCCTCAATTGTTACAATTTTTGAAAGCCGTTTTTATACAGTATGCAAATTCGCCTGGAAGCCTTACTGGAAACGTTGGCGTAGAGTCGGGATTCTCCTTT</canonical>
            <polymorphic>TATGACACCCAGCATCTGGACACGGAGCCAGCAGACGGAGAATACAGAGACCCAAATGCAACAGCAAAGCAGATTATGGACTACGGTAAAAATAATGTACCTGATACAAGGACAAGAGAGTACCTACCAAGGAAAGCGAAAGCACCTTACATCAACTATGTCCATGCTACAGTAGTCTCTTCGTCTGGGGCCCGGCCCCCCAATGTTGTCAATTTTCCCCATTATCTTGGGACACTGACAACTTGAAAACGCTATAACCCAGAGTCTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGRGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGACTGACCTCGGATCCACTGTCAACAGATATGGTCGCCTCAATTGTTACAATTTTTGAAAGCCGTTTTTATACAGTATGCAAATTCGCCTGGAAGCCTTACTGGAAACGTTGGCGTAGAGTCGGGATTCTCCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCAATTGTTTCGTTCACTAAC</pcr_primer_p1>
		<pcr_primer_p2>GCTAGCAAAACCATAACACTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGC</canonical_amplicon>
		<polymorphic_amplicon>AATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGRGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29310</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>120836</contig_pos>
        <strand>+</strand>
        <context>TCCCTTTCTA[C/T]TTTTATTATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTA</left_flank>
        <right_flank>TTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACCCAAATGCAACAGCAAAGCAGATTATGGACTACGGTAAAAATAATGTACCTGATACAAGGACAAGAGAGTACCTACCAAGGAAAGCGAAAGCACCTTACATCAACTATGTCCATGCTACAGTAGTCTCTTCGTCTGGGGCCCGGCCCCCCAATGTTGTCAATTTTCCCCATTATCTTGGGACACTGACAACTTGAAAACGCTATAACCCAGAGTCTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGACTGACCTCGGATCCACTGTCAACAGATATGGTCGCCTCAATTGTTACAATTTTTGAAAGCCGTTTTTATACAGTATGCAAATTCGCCTGGAAGCCTTACTGGAAACGTTGGCGTAGAGTCGGGATTCTCCTTTATCACGTTGTTCATGGTTGTTTAGCACTGTCATTTGGTTTCTTGGCA</canonical>
            <polymorphic>AGACCCAAATGCAACAGCAAAGCAGATTATGGACTACGGTAAAAATAATGTACCTGATACAAGGACAAGAGAGTACCTACCAAGGAAAGCGAAAGCACCTTACATCAACTATGTCCATGCTACAGTAGTCTCTTCGTCTGGGGCCCGGCCCCCCAATGTTGTCAATTTTCCCCATTATCTTGGGACACTGACAACTTGAAAACGCTATAACCCAGAGTCTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTAYTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGACTGACCTCGGATCCACTGTCAACAGATATGGTCGCCTCAATTGTTACAATTTTTGAAAGCCGTTTTTATACAGTATGCAAATTCGCCTGGAAGCCTTACTGGAAACGTTGGCGTAGAGTCGGGATTCTCCTTTATCACGTTGTTCATGGTTGTTTAGCACTGTCATTTGGTTTCTTGGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCAATTGTTTCGTTCACTAAC</pcr_primer_p1>
		<pcr_primer_p2>GCTAGCAAAACCATAACACTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGC</canonical_amplicon>
		<polymorphic_amplicon>AATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTAYTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29311</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>120855</contig_pos>
        <strand>+</strand>
        <context>TAGTTTCAGA[C/T]TATTTCCTAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGA</left_flank>
        <right_flank>TATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCAGATTATGGACTACGGTAAAAATAATGTACCTGATACAAGGACAAGAGAGTACCTACCAAGGAAAGCGAAAGCACCTTACATCAACTATGTCCATGCTACAGTAGTCTCTTCGTCTGGGGCCCGGCCCCCCAATGTTGTCAATTTTCCCCATTATCTTGGGACACTGACAACTTGAAAACGCTATAACCCAGAGTCTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGACTGACCTCGGATCCACTGTCAACAGATATGGTCGCCTCAATTGTTACAATTTTTGAAAGCCGTTTTTATACAGTATGCAAATTCGCCTGGAAGCCTTACTGGAAACGTTGGCGTAGAGTCGGGATTCTCCTTTATCACGTTGTTCATGGTTGTTTAGCACTGTCATTTGGTTTCTTGGCACCTGATCAGGAAAATAAGA</canonical>
            <polymorphic>AAGCAGATTATGGACTACGGTAAAAATAATGTACCTGATACAAGGACAAGAGAGTACCTACCAAGGAAAGCGAAAGCACCTTACATCAACTATGTCCATGCTACAGTAGTCTCTTCGTCTGGGGCCCGGCCCCCCAATGTTGTCAATTTTCCCCATTATCTTGGGACACTGACAACTTGAAAACGCTATAACCCAGAGTCTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGAYTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGACTGACCTCGGATCCACTGTCAACAGATATGGTCGCCTCAATTGTTACAATTTTTGAAAGCCGTTTTTATACAGTATGCAAATTCGCCTGGAAGCCTTACTGGAAACGTTGGCGTAGAGTCGGGATTCTCCTTTATCACGTTGTTCATGGTTGTTTAGCACTGTCATTTGGTTTCTTGGCACCTGATCAGGAAAATAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATCTCCCCTTTTCTGACC</pcr_primer_p1>
		<pcr_primer_p2>TATTCAAATCCCAATTTATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATA</canonical_amplicon>
		<polymorphic_amplicon>GTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGAYTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29312</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>120933</contig_pos>
        <strand>+</strand>
        <context>CGGTAGCTCC[C/T]AGGAGGTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCC</left_flank>
        <right_flank>AGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTACATCAACTATGTCCATGCTACAGTAGTCTCTTCGTCTGGGGCCCGGCCCCCCAATGTTGTCAATTTTCCCCATTATCTTGGGACACTGACAACTTGAAAACGCTATAACCCAGAGTCTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGACTGACCTCGGATCCACTGTCAACAGATATGGTCGCCTCAATTGTTACAATTTTTGAAAGCCGTTTTTATACAGTATGCAAATTCGCCTGGAAGCCTTACTGGAAACGTTGGCGTAGAGTCGGGATTCTCCTTTATCACGTTGTTCATGGTTGTTTAGCACTGTCATTTGGTTTCTTGGCACCTGATCAGGAAAATAAGAATTGTTTTCGCGGTACTGTTTGTCAGAATGAAATGGAACTAAATCAGGTTTTTTTTCTAGAAACTATGCTTACCTCAA</canonical>
            <polymorphic>CCTTACATCAACTATGTCCATGCTACAGTAGTCTCTTCGTCTGGGGCCCGGCCCCCCAATGTTGTCAATTTTCCCCATTATCTTGGGACACTGACAACTTGAAAACGCTATAACCCAGAGTCTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCYAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGACTGACCTCGGATCCACTGTCAACAGATATGGTCGCCTCAATTGTTACAATTTTTGAAAGCCGTTTTTATACAGTATGCAAATTCGCCTGGAAGCCTTACTGGAAACGTTGGCGTAGAGTCGGGATTCTCCTTTATCACGTTGTTCATGGTTGTTTAGCACTGTCATTTGGTTTCTTGGCACCTGATCAGGAAAATAAGAATTGTTTTCGCGGTACTGTTTGTCAGAATGAAATGGAACTAAATCAGGTTTTTTTTCTAGAAACTATGCTTACCTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>452 310 190 48</canonical_bands>
                <polymorphic_bands>762 190 48</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>500 310 190</canonical_bands>
                <polymorphic_bands>810 190</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATCTCCCCTTTTCTGACC</pcr_primer_p1>
		<pcr_primer_p2>TATTCAAATCCCAATTTATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATA</canonical_amplicon>
		<polymorphic_amplicon>GTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCYAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29313</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>120962</contig_pos>
        <strand>+</strand>
        <context>ACCTTTACCT[C/T]TTTTCTGTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCT</left_flank>
        <right_flank>TTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCTCTTCGTCTGGGGCCCGGCCCCCCAATGTTGTCAATTTTCCCCATTATCTTGGGACACTGACAACTTGAAAACGCTATAACCCAGAGTCTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGACTGACCTCGGATCCACTGTCAACAGATATGGTCGCCTCAATTGTTACAATTTTTGAAAGCCGTTTTTATACAGTATGCAAATTCGCCTGGAAGCCTTACTGGAAACGTTGGCGTAGAGTCGGGATTCTCCTTTATCACGTTGTTCATGGTTGTTTAGCACTGTCATTTGGTTTCTTGGCACCTGATCAGGAAAATAAGAATTGTTTTCGCGGTACTGTTTGTCAGAATGAAATGGAACTAAATCAGGTTTTTTTTCTAGAAACTATGCTTACCTCAATACATTTACGAAGCCAATATCTTTGTCCT</canonical>
            <polymorphic>AGTCTCTTCGTCTGGGGCCCGGCCCCCCAATGTTGTCAATTTTCCCCATTATCTTGGGACACTGACAACTTGAAAACGCTATAACCCAGAGTCTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTYTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGACTGACCTCGGATCCACTGTCAACAGATATGGTCGCCTCAATTGTTACAATTTTTGAAAGCCGTTTTTATACAGTATGCAAATTCGCCTGGAAGCCTTACTGGAAACGTTGGCGTAGAGTCGGGATTCTCCTTTATCACGTTGTTCATGGTTGTTTAGCACTGTCATTTGGTTTCTTGGCACCTGATCAGGAAAATAAGAATTGTTTTCGCGGTACTGTTTGTCAGAATGAAATGGAACTAAATCAGGTTTTTTTTCTAGAAACTATGCTTACCTCAATACATTTACGAAGCCAATATCTTTGTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATCTCCCCTTTTCTGACC</pcr_primer_p1>
		<pcr_primer_p2>TATTCAAATCCCAATTTATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATA</canonical_amplicon>
		<polymorphic_amplicon>GTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTYTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29314</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>120983</contig_pos>
        <strand>+</strand>
        <context>CGCTTTCTTT[A/T]ACCCATTCCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTT</left_flank>
        <right_flank>ACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCCCCCAATGTTGTCAATTTTCCCCATTATCTTGGGACACTGACAACTTGAAAACGCTATAACCCAGAGTCTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGACTGACCTCGGATCCACTGTCAACAGATATGGTCGCCTCAATTGTTACAATTTTTGAAAGCCGTTTTTATACAGTATGCAAATTCGCCTGGAAGCCTTACTGGAAACGTTGGCGTAGAGTCGGGATTCTCCTTTATCACGTTGTTCATGGTTGTTTAGCACTGTCATTTGGTTTCTTGGCACCTGATCAGGAAAATAAGAATTGTTTTCGCGGTACTGTTTGTCAGAATGAAATGGAACTAAATCAGGTTTTTTTTCTAGAAACTATGCTTACCTCAATACATTTACGAAGCCAATATCTTTGTCCTATGTGGATTTACGAAGCCAAT</canonical>
            <polymorphic>GCCCCCCAATGTTGTCAATTTTCCCCATTATCTTGGGACACTGACAACTTGAAAACGCTATAACCCAGAGTCTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTWACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGACTGACCTCGGATCCACTGTCAACAGATATGGTCGCCTCAATTGTTACAATTTTTGAAAGCCGTTTTTATACAGTATGCAAATTCGCCTGGAAGCCTTACTGGAAACGTTGGCGTAGAGTCGGGATTCTCCTTTATCACGTTGTTCATGGTTGTTTAGCACTGTCATTTGGTTTCTTGGCACCTGATCAGGAAAATAAGAATTGTTTTCGCGGTACTGTTTGTCAGAATGAAATGGAACTAAATCAGGTTTTTTTTCTAGAAACTATGCTTACCTCAATACATTTACGAAGCCAATATCTTTGTCCTATGTGGATTTACGAAGCCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 310 113 75</canonical_bands>
                <polymorphic_bands>812 113 75</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATCTCCCCTTTTCTGACC</pcr_primer_p1>
		<pcr_primer_p2>TATTCAAATCCCAATTTATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATA</canonical_amplicon>
		<polymorphic_amplicon>GTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTWACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29315</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>121023</contig_pos>
        <strand>+</strand>
        <context>CAATCCTCTT[C/T]CCTTCAATAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTT</left_flank>
        <right_flank>CCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGACAACTTGAAAACGCTATAACCCAGAGTCTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGACTGACCTCGGATCCACTGTCAACAGATATGGTCGCCTCAATTGTTACAATTTTTGAAAGCCGTTTTTATACAGTATGCAAATTCGCCTGGAAGCCTTACTGGAAACGTTGGCGTAGAGTCGGGATTCTCCTTTATCACGTTGTTCATGGTTGTTTAGCACTGTCATTTGGTTTCTTGGCACCTGATCAGGAAAATAAGAATTGTTTTCGCGGTACTGTTTGTCAGAATGAAATGGAACTAAATCAGGTTTTTTTTCTAGAAACTATGCTTACCTCAATACATTTACGAAGCCAATATCTTTGTCCTATGTGGATTTACGAAGCCAATATCTTTGTCTCTACCTTGACTGTTGATAAACTAGACATTT</canonical>
            <polymorphic>CTGACAACTTGAAAACGCTATAACCCAGAGTCTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTYCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGACTGACCTCGGATCCACTGTCAACAGATATGGTCGCCTCAATTGTTACAATTTTTGAAAGCCGTTTTTATACAGTATGCAAATTCGCCTGGAAGCCTTACTGGAAACGTTGGCGTAGAGTCGGGATTCTCCTTTATCACGTTGTTCATGGTTGTTTAGCACTGTCATTTGGTTTCTTGGCACCTGATCAGGAAAATAAGAATTGTTTTCGCGGTACTGTTTGTCAGAATGAAATGGAACTAAATCAGGTTTTTTTTCTAGAAACTATGCTTACCTCAATACATTTACGAAGCCAATATCTTTGTCCTATGTGGATTTACGAAGCCAATATCTTTGTCTCTACCTTGACTGTTGATAAACTAGACATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTTAGTCCTACACCTTTACC</pcr_primer_p1>
		<pcr_primer_p2>ACCATATCTGTTGACAGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGACTGACCTCGGATCCACTGTCAACAGATATGGT</canonical_amplicon>
		<polymorphic_amplicon>GGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTYCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGACTGACCTCGGATCCACTGTCAACAGATATGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29316</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>121054</contig_pos>
        <strand>+</strand>
        <context>GAATAGCTTG[C/T]GTACTRTTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTG</left_flank>
        <right_flank>GTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGACTGACCTCGGATCCACTGTCAACAGATATGGTCGCCTCAATTGTTACAATTTTTGAAAGCCGTTTTTATACAGTATGCAAATTCGCCTGGAAGCCTTACTGGAAACGTTGGCGTAGAGTCGGGATTCTCCTTTATCACGTTGTTCATGGTTGTTTAGCACTGTCATTTGGTTTCTTGGCACCTGATCAGGAAAATAAGAATTGTTTTCGCGGTACTGTTTGTCAGAATGAAATGGAACTAAATCAGGTTTTTTTTCTAGAAACTATGCTTACCTCAATACATTTACGAAGCCAATATCTTTGTCCTATGTGGATTTACGAAGCCAATATCTTTGTCTCTACCTTGACTGTTGATAAACTAGACATTTTTTTCTTATTGTTACAACAAGAATATCTGAG</canonical>
            <polymorphic>CTCCCGATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGYGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGACTGACCTCGGATCCACTGTCAACAGATATGGTCGCCTCAATTGTTACAATTTTTGAAAGCCGTTTTTATACAGTATGCAAATTCGCCTGGAAGCCTTACTGGAAACGTTGGCGTAGAGTCGGGATTCTCCTTTATCACGTTGTTCATGGTTGTTTAGCACTGTCATTTGGTTTCTTGGCACCTGATCAGGAAAATAAGAATTGTTTTCGCGGTACTGTTTGTCAGAATGAAATGGAACTAAATCAGGTTTTTTTTCTAGAAACTATGCTTACCTCAATACATTTACGAAGCCAATATCTTTGTCCTATGTGGATTTACGAAGCCAATATCTTTGTCTCTACCTTGACTGTTGATAAACTAGACATTTTTTTCTTATTGTTACAACAAGAATATCTGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>131 122 109 103 87 84 76 74 51 33 22 21 19 14 12 9 8 7 6 6 4 2</canonical_bands>
                <polymorphic_bands>131 122 115 109 87 84 76 74 51 33 22 21 19 14 9 8 7 6 6 4 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>392 378 83 63 58 26</canonical_bands>
                <polymorphic_bands>455 378 83 58 26</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTTAGTCCTACACCTTTACC</pcr_primer_p1>
		<pcr_primer_p2>ACCATATCTGTTGACAGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGACTGACCTCGGATCCACTGTCAACAGATATGGT</canonical_amplicon>
		<polymorphic_amplicon>GGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGYGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGACTGACCTCGGATCCACTGTCAACAGATATGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29317</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>121060</contig_pos>
        <strand>+</strand>
        <context>CTTGYGTACT[A/G]TTATGCACTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACT</left_flank>
        <right_flank>TTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGACTGACCTCGGATCCACTGTCAACAGATATGGTCGCCTCAATTGTTACAATTTTTGAAAGCCGTTTTTATACAGTATGCAAATTCGCCTGGAAGCCTTACTGGAAACGTTGGCGTAGAGTCGGGATTCTCCTTTATCACGTTGTTCATGGTTGTTTAGCACTGTCATTTGGTTTCTTGGCACCTGATCAGGAAAATAAGAATTGTTTTCGCGGTACTGTTTGTCAGAATGAAATGGAACTAAATCAGGTTTTTTTTCTAGAAACTATGCTTACCTCAATACATTTACGAAGCCAATATCTTTGTCCTATGTGGATTTACGAAGCCAATATCTTTGTCTCTACCTTGACTGTTGATAAACTAGACATTTTTTTCTTATTGTTACAACAAGAATATCTGAGTTTTAA</canonical>
            <polymorphic>ATTTTCCCCCATAAAATCCCTCTGGATTATCCGTTTTAATCGGGTCATATTCATTCCCCTTCTTATCACACTCCGTTCACCAATCACAATCAATTGTTTCGTTCACTAACTTAAATATAATTTGAATAAGCGCAAACACGTGCCGCGACACGCGTCGCGCCGCTCGGCATTGGCGCCGAGATGAGCGGCGCATTCCGCGCACGCTCACAGACGAATTGTTCGTATCAGGGAGACGGGTATCTCCCCTTTTCTGACCGCTATGCGGTCCCTTTCTACTTTTATTATAGTTTCAGACTATTTCCTACGTTTGGCAGTGTTATGGTTTTGCTAGCAACAGTTTTTGAGGGCAGCAAGGTTTCCTCCGGTAGCTCCCAGGAGGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTRTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGACTGACCTCGGATCCACTGTCAACAGATATGGTCGCCTCAATTGTTACAATTTTTGAAAGCCGTTTTTATACAGTATGCAAATTCGCCTGGAAGCCTTACTGGAAACGTTGGCGTAGAGTCGGGATTCTCCTTTATCACGTTGTTCATGGTTGTTTAGCACTGTCATTTGGTTTCTTGGCACCTGATCAGGAAAATAAGAATTGTTTTCGCGGTACTGTTTGTCAGAATGAAATGGAACTAAATCAGGTTTTTTTTCTAGAAACTATGCTTACCTCAATACATTTACGAAGCCAATATCTTTGTCCTATGTGGATTTACGAAGCCAATATCTTTGTCTCTACCTTGACTGTTGATAAACTAGACATTTTTTTCTTATTGTTACAACAAGAATATCTGAGTTTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>336 163 132 114 89 56 55 55</canonical_bands>
                <polymorphic_bands>336 277 132 89 56 55 55</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTTAGTCCTACACCTTTACC</pcr_primer_p1>
		<pcr_primer_p2>ACCATATCTGTTGACAGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTGTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGACTGACCTCGGATCCACTGTCAACAGATATGGT</canonical_amplicon>
		<polymorphic_amplicon>GGTTTTAGTCCTACACCTTTACCTCTTTTCTGTATCGCTTTCTTTAACCCATTCCTATTGTCTTTGCCGTTTATTCAATCCTCTTCCCTTCAATAAATTGGGATTTGAATAGCTTGTGTACTRTTATGCACTTGCACCGCTTATCTTACACATTGGGGGGTTTTGGGGTCTTTTACAGGTAAACAAGTCTCTCTGGTTAGGACGTTGGATCGGTCTCGACTGACCTCGGATCCACTGTCAACAGATATGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29318</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>133338</contig_pos>
        <strand>-</strand>
        <context>GTGCGCGGAA[A/T]GCGCCGCTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGATACCCGTCTCCCTGATACGAACAATTCGTCTGTGAGCGTGCGCGGAA</left_flank>
        <right_flank>GCGCCGCTCATGTCGGCGCCAATGCCGAGCGGCGCGACGCGTGTCGCGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAGGAAACATAAACACAAGCACGCAACGCTAAGGAATTGATACGATTAAAGAAAGGTGGTGTTGACAGCGGATCCGAGGTCAGCCGAGACCGATCCAACGTCCTGACCAGAGAGACTTGTTTACCTGTAAAAGACCCCCCAACCCCCCCCCCCCCCCCAATGTGTAAGATAAGCGGTGCAAGTGCATAACAGTACGCAAGCTATTCGAATCCCAATTTATTGAAGGGAAGAGGATCGAATAAACAGCAAAGACAATAGGAATGGGTAAAAGAAAGCGATACAGAAAAGAGGTAAAGGTGTAGGACTAAAACCTCCTGGGAGCTACCGGAGGAAACCTTGCTGCCCTCAAAAACTGTTGCTAGCAAAACCATAACACTGCCAAACGTAGGAAATAGTCTGAAACTATAATAAAAGTAGAAAGGGACCGCATAGCGGTCAAAAAAGGGAGATACCCGTCTCCCTGATACGAACAATTCGTCTGTGAGCGTGCGCGGAATGCGCCGCTCATGTCGGCGCCAATGCCGAGCGGCGCGACGCGTGTCGCGGCACGTATTGGCGCTTATTCAAATTATATTTAAGTTAGTGAACGAAACAATTGATTGTGATTAGTGAACGGAGTGTGATAAGAAGGGGAATGAATATGACCCGATTAAAACGGATAATCCAGAGGGATTTTATGGGGAAAATCGGGGGACTCTGGGTTATAGCGTTTTCAAGTAGTCAGTGTCCCAAGACATTGGGGAAAATTGACAACAGGTGGGGAGGAAAATTTTTTTGGGTTTTTTGAGATCAAAAGTATCCAACCGGCTACATTGAGCTCAATTATCTCGGTTCCTTTAAGAGACATCAACATTTTTCAACTGATAAATGATTTATCATAATACCATCAACATTTTATCAGTTGAAAATTTTTTGATATCTTTCGGTTGGGTGGGCTTCTACAGTATGCTTCCAGCTGGCGGCGACCGTCTGGCTCCACTAGTAGCAGGGCTGCACT</canonical>
            <polymorphic>TTGAAGGAAACATAAACACAAGCACGCAACGCTAAGGAATTGATACGATTAAAGAAAGGTGGTGTTGACAGCGGATCCGAGGTCAGCCGAGACCGATCCAACGTCCTGACCAGAGAGACTTGTTTACCTGTAAAAGACCCCCCAACCCCCCCCCCCCCCCCAATGTGTAAGATAAGCGGTGCAAGTGCATAACAGTACGCAAGCTATTCGAATCCCAATTTATTGAAGGGAAGAGGATCGAATAAACAGCAAAGACAATAGGAATGGGTAAAAGAAAGCGATACAGAAAAGAGGTAAAGGTGTAGGACTAAAACCTCCTGGGAGCTACCGGAGGAAACCTTGCTGCCCTCAAAAACTGTTGCTAGCAAAACCATAACACTGCCAAACGTAGGAAATAGTCTGAAACTATAATAAAAGTAGAAAGGGACCGCATAGCGGTCAAAAAAGGGAGATACCCGTCTCCCTGATACGAACAATTCGTCTGTGAGCGTGCGCGGAAWGCGCCGCTCATGTCGGCGCCAATGCCGAGCGGCGCGACGCGTGTCGCGGCACGTATTGGCGCTTATTCAAATTATATTTAAGTTAGTGAACGAAACAATTGATTGTGATTAGTGAACGGAGTGTGATAAGAAGGGGAATGAATATGACCCGATTAAAACGGATAATCCAGAGGGATTTTATGGGGAAAATCGGGGGACTCTGGGTTATAGCGTTTTCAAGTAGTCAGTGTCCCAAGACATTGGGGAAAATTGACAACAGGTGGGGAGGAAAATTTTTTTGGGTTTTTTGAGATCAAAAGTATCCAACCGGCTACATTGAGCTCAATTATCTCGGTTCCTTTAAGAGACATCAACATTTTTCAACTGATAAATGATTTATCATAATACCATCAACATTTTATCAGTTGAAAATTTTTTGATATCTTTCGGTTGGGTGGGCTTCTACAGTATGCTTCCAGCTGGCGGCGACCGTCTGGCTCCACTAGTAGCAGGGCTGCACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAACGTAGGAAATAGTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTATCACACTCCGTTCACTAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAAACGTAGGAAATAGTCTGAAACTATAATAAAAGTAGAAAGGGACCGCATAGCGGTCAAAAAAGGGAGATACCCGTCTCCCTGATACGAACAATTCGTCTGTGAGCGTGCGCGGAATGCGCCGCTCATGTCGGCGCCAATGCCGAGCGGCGCGACGCGTGTCGCGGCACGTATTGGCGCTTATTCAAATTATATTTAAGTTAGTGAACGAAACAATTGATTGTGATTAGTGAACGGAGTGTGATAAG</canonical_amplicon>
		<polymorphic_amplicon>CAAACGTAGGAAATAGTCTGAAACTATAATAAAAGTAGAAAGGGACCGCATAGCGGTCAAAAAAGGGAGATACCCGTCTCCCTGATACGAACAATTCGTCTGTGAGCGTGCGCGGAAWGCGCCGCTCATGTCGGCGCCAATGCCGAGCGGCGCGACGCGTGTCGCGGCACGTATTGGCGCTTATTCAAATTATATTTAAGTTAGTGAACGAAACAATTGATTGTGATTAGTGAACGGAGTGTGATAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29319</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>207020</contig_pos>
        <strand>+</strand>
        <context>AGGATAATTG[C/T]AGAAATATCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCCGCCATCTTATTGAGCCATCAGCGTTATACGTAACGAGGATAATTG</left_flank>
        <right_flank>AGAAATATCCGATATATTCAAGTTGTATTTTTGTTTCATTCCCAATCTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTGGGTTTCCGTAATTTCTGACGAGCCATTCGTACAGTGGGCTCGCAAGTTTTCTCAGTGAGTCTAAAATTCTGATATTCATTGTTCTAATATTCCTAGCTTCTCACATTTTACTGCTCTTCGATAGTCCTGTACAACGTACATAACTATAATGGCATCCATAGCTGGGTACAATGTGAAGGCACATAAAAAGATTCCAGTGGGAAGGTCCAGTTCAAGATTCAGCATAGGAAGATGAATTATGGAAACCACTGGAGAAAACAAAGTAATCGTTGGGGTGACGATTTGAAGAACAAGGGTCTTGAAAAACTGATTATGTAAATTTCGAAGCGATGGAGACGGAATTTGAAGTTTCTCTTCCATGGATAGATACATTTGTACGGCACAATAAATGATTATAGTATATTGGACCAACATTATTGAAGTTAAACTCAAAGATAATAGAAAATTCCGCCATCTTATTGAGCCATCAGCGTTATACGTAACGAGGATAATTGCAGAAATATCCGATATATTCAAGTTGTATTTTTGTTTCATTCCCAATCTCATATAATTTTCAGAATAATCATCTCTTTTTCCTAGAGAGTGTACCGATAGACACCAAAGGATTCCAAAAAACAGCGCATAAACCATCCAGATGAAAAACTTCCATCCTTTGAACAATTTTAGTTTTGTCGTGCTACAATTTCAGAGAGTTTGAACTAGAAGACTCTGAACGAAATCTTACTGAAAAACGGCCCAATATCTATACAAGAACTGAACGGATAATAGAGAAGTTGTGCAGGCGTAAACTCCGGTATAGAAGGAAATTAAGCATGTTACGGAGTCTCTGTCCAAGTAAAATGGATGGCTGGTACTGTAGAAGACGTAGCCAGTGTTATGAAAGTAGACATCCTGTAACTTGTGAACAGGTGAAACAAATGTGAACTTTTTTGGAATTACCGGGTAGATAAGAAACTCAATAGACGCGAAAACAATTCCACACGCTGGGAACACTA</canonical>
            <polymorphic>CATTGGGTTTCCGTAATTTCTGACGAGCCATTCGTACAGTGGGCTCGCAAGTTTTCTCAGTGAGTCTAAAATTCTGATATTCATTGTTCTAATATTCCTAGCTTCTCACATTTTACTGCTCTTCGATAGTCCTGTACAACGTACATAACTATAATGGCATCCATAGCTGGGTACAATGTGAAGGCACATAAAAAGATTCCAGTGGGAAGGTCCAGTTCAAGATTCAGCATAGGAAGATGAATTATGGAAACCACTGGAGAAAACAAAGTAATCGTTGGGGTGACGATTTGAAGAACAAGGGTCTTGAAAAACTGATTATGTAAATTTCGAAGCGATGGAGACGGAATTTGAAGTTTCTCTTCCATGGATAGATACATTTGTACGGCACAATAAATGATTATAGTATATTGGACCAACATTATTGAAGTTAAACTCAAAGATAATAGAAAATTCCGCCATCTTATTGAGCCATCAGCGTTATACGTAACGAGGATAATTGYAGAAATATCCGATATATTCAAGTTGTATTTTTGTTTCATTCCCAATCTCATATAATTTTCAGAATAATCATCTCTTTTTCCTAGAGAGTGTACCGATAGACACCAAAGGATTCCAAAAAACAGCGCATAAACCATCCAGATGAAAAACTTCCATCCTTTGAACAATTTTAGTTTTGTCGTGCTACAATTTCAGAGAGTTTGAACTAGAAGACTCTGAACGAAATCTTACTGAAAAACGGCCCAATATCTATACAAGAACTGAACGGATAATAGAGAAGTTGTGCAGGCGTAAACTCCGGTATAGAAGGAAATTAAGCATGTTACGGAGTCTCTGTCCAAGTAAAATGGATGGCTGGTACTGTAGAAGACGTAGCCAGTGTTATGAAAGTAGACATCCTGTAACTTGTGAACAGGTGAAACAAATGTGAACTTTTTTGGAATTACCGGGTAGATAAGAAACTCAATAGACGCGAAAACAATTCCACACGCTGGGAACACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>499 284 217</canonical_bands>
                <polymorphic_bands>783 217</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTGGACCAACATTATTGAAGT</pcr_primer_p1>
		<pcr_primer_p2>AGTTTTTCATCTGGATGGTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TATTGGACCAACATTATTGAAGTTAAACTCAAAGATAATAGAAAATTCCGCCATCTTATTGAGCCATCAGCGTTATACGTAACGAGGATAATTGCAGAAATATCCGATATATTCAAGTTGTATTTTTGTTTCATTCCCAATCTCATATAATTTTCAGAATAATCATCTCTTTTTCCTAGAGAGTGTACCGATAGACACCAAAGGATTCCAAAAAACAGCGCATAAACCATCCAGATGAAAAACT</canonical_amplicon>
		<polymorphic_amplicon>TATTGGACCAACATTATTGAAGTTAAACTCAAAGATAATAGAAAATTCCGCCATCTTATTGAGCCATCAGCGTTATACGTAACGAGGATAATTGYAGAAATATCCGATATATTCAAGTTGTATTTTTGTTTCATTCCCAATCTCATATAATTTTCAGAATAATCATCTCTTTTTCCTAGAGAGTGTACCGATAGACACCAAAGGATTCCAAAAAACAGCGCATAAACCATCCAGATGAAAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29320</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>211805</contig_pos>
        <strand>+</strand>
        <context>ACATGACATC[A/C]CTCTATGGTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACGGGTTTGAAGAAATCACAACTGGAAAAAGCGTTTCAAAACATGACATC</left_flank>
        <right_flank>CTCTATGGTGGATTACGAATCGAGAATTCGAAAATGACGAATCTCTCATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCCAGCTCTTGTCCTATTCCCGTCATTCTCCTAATTGGTATCCGCCTTTACCTAACTAAACACACTTGCTTCTAGAAAATCGAATAACTTAGGATTCATGTTTATACCTTGATGTCATGTAATTGCTGTTTTCTGAGTATAAAACTTATTTCTTGATTTTCAATTTCAAACGTTTTCACTTATTCAACTCCAGTTCATAAATGCGCTTAATACTTTTGCTTCTCTCAATTTCTCAATTTCACTACAGTACCCAAGACATTGCGGAATACCTGAAGCACGTCCTGGATTACTATAAAAGTAGTTAAACATTTTTTTTAAAACTTCTTCATACTTTTTCACAGGTGCAAGCCCGGAATGCGTTTTCAATTATACAGAGGTTAACTCAAAAACGATAAAATATTTTCCACAATGTGCTAAGGTTTATGGAATTATTGTCATAAATGAAAACACGGGTTTGAAGAAATCACAACTGGAAAAAGCGTTTCAAAACATGACATCCCTCTATGGTGGATTACGAATCGAGAATTCGAAAATGACGAATCTCTCATTCTTCCCCGCAGCTCAAAATGGGTTGCTCAAGATAATCTGTAAAACATGTAAGTTTCAAAAATATCTGAAGTTTTGAAGCTTTAAACATTTTCTAGATGGCGTCTACATACAGAACAATCAAAATCTAAAAGATGTTTCAAGCTTGGAAAAAATGTACATGTATGAAGATGAATTTGGAGAAGAATGTGATTATCGAATCGAAAATAACACAAAACTAGACGCAGAAGACTTGTGTGATACTGGATACCCACGATTTTTCATGGACCTCAAAGTTAAAGGGAATATGAAAGATTGTGGTAATTTTCAATGTTTTTTTAGTTTTGTTATTTAGTTTATAAAGGAACTCATCGAAAATGGCAAAACATTCGCCTTATGTGTTTCCTAGGACATTCACCATGATGGCCTAACATTCGATTAAAGCTTCCATGCGGTTAGGAAATTCAGCCGACC</canonical>
            <polymorphic>GCCCAGCTCTTGTCCTATTCCCGTCATTCTCCTAATTGGTATCCGCCTTTACCTAACTAAACACACTTGCTTCTAGAAAATCGAATAACTTAGGATTCATGTTTATACCTTGATGTCATGTAATTGCTGTTTTCTGAGTATAAAACTTATTTCTTGATTTTCAATTTCAAACGTTTTCACTTATTCAACTCCAGTTCATAAATGCGCTTAATACTTTTGCTTCTCTCAATTTCTCAATTTCACTACAGTACCCAAGACATTGCGGAATACCTGAAGCACGTCCTGGATTACTATAAAAGTAGTTAAACATTTTTTTTAAAACTTCTTCATACTTTTTCACAGGTGCAAGCCCGGAATGCGTTTTCAATTATACAGAGGTTAACTCAAAAACGATAAAATATTTTCCACAATGTGCTAAGGTTTATGGAATTATTGTCATAAATGAAAACACGGGTTTGAAGAAATCACAACTGGAAAAAGCGTTTCAAAACATGACATCMCTCTATGGTGGATTACGAATCGAGAATTCGAAAATGACGAATCTCTCATTCTTCCCCGCAGCTCAAAATGGGTTGCTCAAGATAATCTGTAAAACATGTAAGTTTCAAAAATATCTGAAGTTTTGAAGCTTTAAACATTTTCTAGATGGCGTCTACATACAGAACAATCAAAATCTAAAAGATGTTTCAAGCTTGGAAAAAATGTACATGTATGAAGATGAATTTGGAGAAGAATGTGATTATCGAATCGAAAATAACACAAAACTAGACGCAGAAGACTTGTGTGATACTGGATACCCACGATTTTTCATGGACCTCAAAGTTAAAGGGAATATGAAAGATTGTGGTAATTTTCAATGTTTTTTTAGTTTTGTTATTTAGTTTATAAAGGAACTCATCGAAAATGGCAAAACATTCGCCTTATGTGTTTCCTAGGACATTCACCATGATGGCCTAACATTCGATTAAAGCTTCCATGCGGTTAGGAAATTCAGCCGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTGCTAAGGTTTATGGAATTA</pcr_primer_p1>
		<pcr_primer_p2>TATGTAGACGCCATCTAGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGTGCTAAGGTTTATGGAATTATTGTCATAAATGAAAACACGGGTTTGAAGAAATCACAACTGGAAAAAGCGTTTCAAAACATGACATCCCTCTATGGTGGATTACGAATCGAGAATTCGAAAATGACGAATCTCTCATTCTTCCCCGCAGCTCAAAATGGGTTGCTCAAGATAATCTGTAAAACATGTAAGTTTCAAAAATATCTGAAGTTTTGAAGCTTTAAACATTTTCTAGATGGCGTCTACATA</canonical_amplicon>
		<polymorphic_amplicon>ATGTGCTAAGGTTTATGGAATTATTGTCATAAATGAAAACACGGGTTTGAAGAAATCACAACTGGAAAAAGCGTTTCAAAACATGACATCMCTCTATGGTGGATTACGAATCGAGAATTCGAAAATGACGAATCTCTCATTCTTCCCCGCAGCTCAAAATGGGTTGCTCAAGATAATCTGTAAAACATGTAAGTTTCAAAAATATCTGAAGTTTTGAAGCTTTAAACATTTTCTAGATGGCGTCTACATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29321</snp_id>
        <super_contig>c004401044.Contig1</super_contig>
        <contig_pos>223243</contig_pos>
        <strand>+</strand>
        <context>GATATTCAAA[G/T]TTTGAAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTCACTGCAATAAATGGAACAATAAATATCACGAATTCCGATATTCAAA</left_flank>
        <right_flank>TTTGAAATTTTTGAAAAATCTGAGAACTTTCGAATTCCAAAACCAGGGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAACTCGTGGGCCCAATGTTGGAAGCACCAAGTTCTTAGGTTGCTGTGGCGCAGAGTTGCTCTGCCGCCATATATGAAAGCAGCACGAAATCCACTAATTGTCTGAATTGATTACTGTACACCATCATGTCAAAAGGCACTGTAGCTCCAAAGAAACCGAAAAATCATTTTTGACTTCATAAACTTTTGAATATTTTTGAGTTGAATGTTTAGTCAAACAACAAAAGTAATGGCATAATTACAACCTTCGTATTCTCCAGCATTTCGAATTTTCTCAAAATTCATGAATTGAAATTTTTCACAAAATTCAAAAATGAAAATTTCGATTTATTTTCTCTTCTCTATGTTTTTTTTATTTTCCTTCACCATTGAAAATAGAGTAGAGGATTATCAAATTAATGATATAATTATATCAAATGTGTCCGATAATGTAACTTGGCTCTCCAATGTCACTGCAATAAATGGAACAATAAATATCACGAATTCCGATATTCAAATTTTGAAATTTTTGAAAAATCTGAGAACTTTCGAATTCCAAAACCAGGGTTTTCAAGAGAAAATCTCATTCAATCTTCAAAATAACTCACAAATGACAAGATTTGGATTACCGGCTTTGGAGGTACAGTAATTGAAAAATATATGAAATCCCAAAATTCCGAAATTCTAAAAATCTAAAATTCTGAAATTCTGATATTCTGAAATTTTTAAAGTCTGAAATTCTGAAATTCTAAGATAGTGGAATTCTTAAATCCTTCAATTCGTAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAATATTTGAATCATTGAATTATTGAATTGTTGACTTTTTCTGGGATTCTATTTGTTTGAATTTCTGAAATTCAGATTTTCTGATTTTCTGAATATCTGAAAATTGTAATCATTTCGAGTTTTTTAAAAAGTTTTTTCCAG</canonical>
            <polymorphic>TTGAACTCGTGGGCCCAATGTTGGAAGCACCAAGTTCTTAGGTTGCTGTGGCGCAGAGTTGCTCTGCCGCCATATATGAAAGCAGCACGAAATCCACTAATTGTCTGAATTGATTACTGTACACCATCATGTCAAAAGGCACTGTAGCTCCAAAGAAACCGAAAAATCATTTTTGACTTCATAAACTTTTGAATATTTTTGAGTTGAATGTTTAGTCAAACAACAAAAGTAATGGCATAATTACAACCTTCGTATTCTCCAGCATTTCGAATTTTCTCAAAATTCATGAATTGAAATTTTTCACAAAATTCAAAAATGAAAATTTCGATTTATTTTCTCTTCTCTATGTTTTTTTTATTTTCCTTCACCATTGAAAATAGAGTAGAGGATTATCAAATTAATGATATAATTATATCAAATGTGTCCGATAATGTAACTTGGCTCTCCAATGTCACTGCAATAAATGGAACAATAAATATCACGAATTCCGATATTCAAAKTTTGAAATTTTTGAAAAATCTGAGAACTTTCGAATTCCAAAACCAGGGTTTTCAAGAGAAAATCTCATTCAATCTTCAAAATAACTCACAAATGACAAGATTTGGATTACCGGCTTTGGAGGTACAGTAATTGAAAAATATATGAAATCCCAAAATTCCGAAATTCTAAAAATCTAAAATTCTGAAATTCTGATATTCTGAAATTTTTAAAGTCTGAAATTCTGAAATTCTAAGATAGTGGAATTCTTAAATCCTTCAATTCGTAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAATATTTGAATCATTGAATTATTGAATTGTTGACTTTTTCTGGGATTCTATTTGTTTGAATTTCTGAAATTCAGATTTTCTGATTTTCTGAATATCTGAAAATTGTAATCATTTCGAGTTTTTTAAAAAGTTTTTTCCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>269 163 121 73 65 27 24 16 16 16 16 14 14 14 12 11 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>269 163 121 73 65 27 24 22 16 16 16 16 14 14 12 11 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>131 98 96 76 75 40 34 33 31 27 25 23 16 16 16 16 16 14 14 12 12 11 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6</canonical_bands>
                <polymorphic_bands>131 98 96 76 75 40 34 33 31 27 25 23 22 16 16 16 16 16 14 12 12 11 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTCACCATTGAAAATAGAGTA</pcr_primer_p1>
		<pcr_primer_p2>GTAATCCAAATCTTGTCATTTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCTTCACCATTGAAAATAGAGTAGAGGATTATCAAATTAATGATATAATTATATCAAATGTGTCCGATAATGTAACTTGGCTCTCCAATGTCACTGCAATAAATGGAACAATAAATATCACGAATTCCGATATTCAAATTTTGAAATTTTTGAAAAATCTGAGAACTTTCGAATTCCAAAACCAGGGTTTTCAAGAGAAAATCTCATTCAATCTTCAAAATAACTCACAAATGACAAGATTTGGATTAC</canonical_amplicon>
		<polymorphic_amplicon>CCTTCACCATTGAAAATAGAGTAGAGGATTATCAAATTAATGATATAATTATATCAAATGTGTCCGATAATGTAACTTGGCTCTCCAATGTCACTGCAATAAATGGAACAATAAATATCACGAATTCCGATATTCAAAKTTTGAAATTTTTGAAAAATCTGAGAACTTTCGAATTCCAAAACCAGGGTTTTCAAGAGAAAATCTCATTCAATCTTCAAAATAACTCACAAATGACAAGATTTGGATTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29322</snp_id>
        <super_contig>c004501355.Contig1</super_contig>
        <contig_pos>11086</contig_pos>
        <strand>+</strand>
        <context>GGCATATCTA[A/G]GTCAAAATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGATTTTCGGACATTTTTAGGTCAGAAACTTCGATTTTCAGGCATATCTA</left_flank>
        <right_flank>GTCAAAATTCTCGATTTTTGAGGTCTGTTCGATCAAAAATCTCGTATTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTAGAAATTCCTGAAAATCCAGTTTTCAGCACTAAAATCAGATTTTTTTAGCTCTAAAATTCAATTTTCCACTCCAAAATGGACGATTTTCGCATTTTTTCAGCTTGGAAAACTGATTTTTTGGCCATTTTTCAGATTTTCAAGCCTAAAACTGCTGAAAATCCAATTTTCAGCTCTAAAACTCACTTTGCCGCTTCCTCTTCAATCTCTCCAGTCTCCATATCCTCTCCTTCGGCTCCGGGCGTTGCTCCAGACGGCGTAGCTGCATGATGTGATGACGTGGCGGCGAGCAGGGATTCAGCAGTTGGCTCGTTCTGAAAATCCCGATTTTTAGTTGAAATGAGTCAAAAAGACCCGATTTTTGCGATTTTTGGGTCGAAAAATCTGGTTTTTAGTGCTCTTTTTGATCGAAAATCATGAATTTTGAGCTTTTTGGGTCGAAAAATCTCGATTTTCGGACATTTTTAGGTCAGAAACTTCGATTTTCAGGCATATCTAAGTCAAAATTCTCGATTTTTGAGGTCTGTTCGATCAAAAATCTCGTATTTCGAGCTTTTCGGGTCAAAAATCGAGATGTTCGGACATTTTTAGGTGAAAAATCGCGATTTCTGAGGTTTTCCAGGTCAAAAATCTCGATTTTAAAACTTTTTTTGGGTGGAAAATATGATTTTTGAACTTTTTTTAAACCAAAAAAGCTCGATTTTCAAAGTTTTTTGAGTAAAAAATTTTTATTTTTCATGTAAAAAGAGCTAGAAATAATAATTTTTGAGGGTTTCTAGATCAAAAATTGCAATTTTCGAGCATTTTTAGCTCGAAAATCACTCAAATTCTCAAAGAATACTCCATTTTTCACTGTAAAATGAGCCAAAAATGACGATTTTCGGGGATTTTTGGGTCATAACCCTTGCTTTCTGAGCTTTTTTGGGCAGAAAATCACTCAAATTCTCAAAAAAATGTTTCATGTTTCATGTAAAATGAGCCAAAAATGACAATTTTCGA</canonical>
            <polymorphic>CTTAGAAATTCCTGAAAATCCAGTTTTCAGCACTAAAATCAGATTTTTTTAGCTCTAAAATTCAATTTTCCACTCCAAAATGGACGATTTTCGCATTTTTTCAGCTTGGAAAACTGATTTTTTGGCCATTTTTCAGATTTTCAAGCCTAAAACTGCTGAAAATCCAATTTTCAGCTCTAAAACTCACTTTGCCGCTTCCTCTTCAATCTCTCCAGTCTCCATATCCTCTCCTTCGGCTCCGGGCGTTGCTCCAGACGGCGTAGCTGCATGATGTGATGACGTGGCGGCGAGCAGGGATTCAGCAGTTGGCTCGTTCTGAAAATCCCGATTTTTAGTTGAAATGAGTCAAAAAGACCCGATTTTTGCGATTTTTGGGTCGAAAAATCTGGTTTTTAGTGCTCTTTTTGATCGAAAATCATGAATTTTGAGCTTTTTGGGTCGAAAAATCTCGATTTTCGGACATTTTTAGGTCAGAAACTTCGATTTTCAGGCATATCTARGTCAAAATTCTCGATTTTTGAGGTCTGTTCGATCAAAAATCTCGTATTTCGAGCTTTTCGGGTCAAAAATCGAGATGTTCGGACATTTTTAGGTGAAAAATCGCGATTTCTGAGGTTTTCCAGGTCAAAAATCTCGATTTTAAAACTTTTTTTGGGTGGAAAATATGATTTTTGAACTTTTTTTAAACCAAAAAAGCTCGATTTTCAAAGTTTTTTGAGTAAAAAATTTTTATTTTTCATGTAAAAAGAGCTAGAAATAATAATTTTTGAGGGTTTCTAGATCAAAAATTGCAATTTTCGAGCATTTTTAGCTCGAAAATCACTCAAATTCTCAAAGAATACTCCATTTTTCACTGTAAAATGAGCCAAAAATGACGATTTTCGGGGATTTTTGGGTCATAACCCTTGCTTTCTGAGCTTTTTTGGGCAGAAAATCACTCAAATTCTCAAAAAAATGTTTCATGTTTCATGTAAAATGAGCCAAAAATGACAATTTTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>496 303 113 87 1</canonical_bands>
                <polymorphic_bands>609 303 87 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCTGGTTTTTAGTGCTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTGACCTGGAAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCTGGTTTTTAGTGCTCTTTTTGATCGAAAATCATGAATTTTGAGCTTTTTGGGTCGAAAAATCTCGATTTTCGGACATTTTTAGGTCAGAAACTTCGATTTTCAGGCATATCTAAGTCAAAATTCTCGATTTTTGAGGTCTGTTCGATCAAAAATCTCGTATTTCGAGCTTTTCGGGTCAAAAATCGAGATGTTCGGACATTTTTAGGTGAAAAATCGCGATTTCTGAGGTTTTCCAGGTCAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AATCTGGTTTTTAGTGCTCTTTTTGATCGAAAATCATGAATTTTGAGCTTTTTGGGTCGAAAAATCTCGATTTTCGGACATTTTTAGGTCAGAAACTTCGATTTTCAGGCATATCTARGTCAAAATTCTCGATTTTTGAGGTCTGTTCGATCAAAAATCTCGTATTTCGAGCTTTTCGGGTCAAAAATCGAGATGTTCGGACATTTTTAGGTGAAAAATCGCGATTTCTGAGGTTTTCCAGGTCAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29323</snp_id>
        <super_contig>c004501355.Contig1</super_contig>
        <contig_pos>11317</contig_pos>
        <strand>+</strand>
        <context>MAAAAATTTT[A/C]ATTTTTCATG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTAAACCAAAAAAGCTCGATTTTCAAAGTTTTTTGAGTAAAAAATTTT</left_flank>
        <right_flank>ATTTTTCATGTAAAAAGAGCTAGAAATAATAATTTTTGAGGGTTTCTAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGGCTCCGGGCGTTGCTCCAGACGGCGTAGCTGCATGATGTGATGACGTGGCGGCGAGCAGGGATTCAGCAGTTGGCTCGTTCTGAAAATCCCGATTTTTAGTTGAAATGAGTCAAAAAGACCCGATTTTTGCGATTTTTGGGTCGAAAAATCTGGTTTTTAGTGCTCTTTTTGATCGAAAATCATGAATTTTGAGCTTTTTGGGTCGAAAAATCTCGATTTTCGGACATTTTTAGGTCAGAAACTTCGATTTTCAGGCATATCTAAGTCAAAATTCTCGATTTTTGAGGTCTGTTCGATCAAAAATCTCGTATTTCGAGCTTTTCGGGTCAAAAATCGAGATGTTCGGACATTTTTAGGTGAAAAATCGCGATTTCTGAGGTTTTCCAGGTCAAAAATCTCGATTTTAAAACTTTTTTTGGGTGGAAAATATGATTTTTGAACTTTTTTTAAACCAAAAAAGCTCGATTTTCAAAGTTTTTTGAGTAAAAAATTTTTATTTTTCATGTAAAAAGAGCTAGAAATAATAATTTTTGAGGGTTTCTAGATCAAAAATTGCAATTTTCGAGCATTTTTAGCTCGAAAATCACTCAAATTCTCAAAGAATACTCCATTTTTCACTGTAAAATGAGCCAAAAATGACGATTTTCGGGGATTTTTGGGTCATAACCCTTGCTTTCTGAGCTTTTTTGGGCAGAAAATCACTCAAATTCTCAAAAAAATGTTTCATGTTTCATGTAAAATGAGCCAAAAATGACAATTTTCGACCTTTTTTAAGTGAAAATTGCAATTTTTCAGCATTTTTAGGTCGAAAATCTCTCAAAACCTTGATTTTTTCACTGAAACTACAGTTTTTCATCGATTTTGAGCACAAACCTCTTCAAAAGTGGTGATGTTGAGCGTGTTGAAGTGACCCATAAAGTTGACACCAGACTTCTCGGTCAGCGGGAGGAATCTGCGAGATTTGGGCATTTTTTGGGGGGTTATTAGGTCGGCAA</canonical>
            <polymorphic>TTCGGCTCCGGGCGTTGCTCCAGACGGCGTAGCTGCATGATGTGATGACGTGGCGGCGAGCAGGGATTCAGCAGTTGGCTCGTTCTGAAAATCCCGATTTTTAGTTGAAATGAGTCAAAAAGACCCGATTTTTGCGATTTTTGGGTCGAAAAATCTGGTTTTTAGTGCTCTTTTTGATCGAAAATCATGAATTTTGAGCTTTTTGGGTCGAAAAATCTCGATTTTCGGACATTTTTAGGTCAGAAACTTCGATTTTCAGGCATATCTAAGTCAAAATTCTCGATTTTTGAGGTCTGTTCGATCAAAAATCTCGTATTTCGAGCTTTTCGGGTCAAAAATCGAGATGTTCGGACATTTTTAGGTGAAAAATCGCGATTTCTGAGGTTTTCCAGGTCAAAAATCTCGATTTTAAAACTTTTTTTGGGTGGAAAATATGATTTTTGAACTTTTTTTAAACCAAAAAAGCTCGATTTTCAAAGTTTTTTGAGTAAAAAATTTTMATTTTTCATGTAAAAAGAGCTAGAAATAATAATTTTTGAGGGTTTCTAGATCAAAAATTGCAATTTTCGAGCATTTTTAGCTCGAAAATCACTCAAATTCTCAAAGAATACTCCATTTTTCACTGTAAAATGAGCCAAAAATGACGATTTTCGGGGATTTTTGGGTCATAACCCTTGCTTTCTGAGCTTTTTTGGGCAGAAAATCACTCAAATTCTCAAAAAAATGTTTCATGTTTCATGTAAAATGAGCCAAAAATGACAATTTTCGACCTTTTTTAAGTGAAAATTGCAATTTTTCAGCATTTTTAGGTCGAAAATCTCTCAAAACCTTGATTTTTTCACTGAAACTACAGTTTTTCATCGATTTTGAGCACAAACCTCTTCAAAAGTGGTGATGTTGAGCGTGTTGAAGTGACCCATAAAGTTGACACCAGACTTCTCGGTCAGCGGGAGGAATCTGCGAGATTTGGGCATTTTTTGGGGGGTTATTAGGTCGGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAAAATATGATTTTTGAACTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGGGTTATGACCCAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGGAAAATATGATTTTTGAACTTTTTTTAAACCAAAAAAGCTCGATTTTCAAAGTTTTTTGAGTAAAAAATTTTTATTTTTCATGTAAAAAGAGCTAGAAATAATAATTTTTGAGGGTTTCTAGATCAAAAATTGCAATTTTCGAGCATTTTTAGCTCGAAAATCACTCAAATTCTCAAAGAATACTCCATTTTTCACTGTAAAATGAGCCAAAAATGACGATTTTCGGGGATTTTTGGGTCATAACCCTT</canonical_amplicon>
		<polymorphic_amplicon>TGGAAAATATGATTTTTGAACTTTTTTTAAACCAAAAAAGCTCGATTTTCAAAGTTTTTTGAGTAAAAAATTTTMATTTTTCATGTAAAAAGAGCTAGAAATAATAATTTTTGAGGGTTTCTAGATCAAAAATTGCAATTTTCGAGCATTTTTAGCTCGAAAATCACTCAAATTCTCAAAGAATACTCCATTTTTCACTGTAAAATGAGCCAAAAATGACGATTTTCGGGGATTTTTGGGTCATAACCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29324</snp_id>
        <super_contig>c004501355.Contig1</super_contig>
        <contig_pos>11428</contig_pos>
        <strand>+</strand>
        <context>TCAAARAATA[A/G]TCCATTTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATTTTCGAGCATTTTTAGCTCGAAAATCACTCAAATTCTCAAAGAATA</left_flank>
        <right_flank>TCCATTTTTCACTGTAAAATGAGCCAAAAATGACGATTTTCGGGGATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTCAAAAAGACCCGATTTTTGCGATTTTTGGGTCGAAAAATCTGGTTTTTAGTGCTCTTTTTGATCGAAAATCATGAATTTTGAGCTTTTTGGGTCGAAAAATCTCGATTTTCGGACATTTTTAGGTCAGAAACTTCGATTTTCAGGCATATCTAAGTCAAAATTCTCGATTTTTGAGGTCTGTTCGATCAAAAATCTCGTATTTCGAGCTTTTCGGGTCAAAAATCGAGATGTTCGGACATTTTTAGGTGAAAAATCGCGATTTCTGAGGTTTTCCAGGTCAAAAATCTCGATTTTAAAACTTTTTTTGGGTGGAAAATATGATTTTTGAACTTTTTTTAAACCAAAAAAGCTCGATTTTCAAAGTTTTTTGAGTAAAAAATTTTTATTTTTCATGTAAAAAGAGCTAGAAATAATAATTTTTGAGGGTTTCTAGATCAAAAATTGCAATTTTCGAGCATTTTTAGCTCGAAAATCACTCAAATTCTCAAAGAATACTCCATTTTTCACTGTAAAATGAGCCAAAAATGACGATTTTCGGGGATTTTTGGGTCATAACCCTTGCTTTCTGAGCTTTTTTGGGCAGAAAATCACTCAAATTCTCAAAAAAATGTTTCATGTTTCATGTAAAATGAGCCAAAAATGACAATTTTCGACCTTTTTTAAGTGAAAATTGCAATTTTTCAGCATTTTTAGGTCGAAAATCTCTCAAAACCTTGATTTTTTCACTGAAACTACAGTTTTTCATCGATTTTGAGCACAAACCTCTTCAAAAGTGGTGATGTTGAGCGTGTTGAAGTGACCCATAAAGTTGACACCAGACTTCTCGGTCAGCGGGAGGAATCTGCGAGATTTGGGCATTTTTTGGGGGGTTATTAGGTCGGCAAATTGGGTTTTAGGCTCAAATTTCCTGATTTTTGGACCATTTTCTGGCCTAAAAATCGAAAAAATCGACATTTTTGTGCAAGAAAATCGATTTTCAAGCTCTGAAAATTGGG</canonical>
            <polymorphic>GAGTCAAAAAGACCCGATTTTTGCGATTTTTGGGTCGAAAAATCTGGTTTTTAGTGCTCTTTTTGATCGAAAATCATGAATTTTGAGCTTTTTGGGTCGAAAAATCTCGATTTTCGGACATTTTTAGGTCAGAAACTTCGATTTTCAGGCATATCTAAGTCAAAATTCTCGATTTTTGAGGTCTGTTCGATCAAAAATCTCGTATTTCGAGCTTTTCGGGTCAAAAATCGAGATGTTCGGACATTTTTAGGTGAAAAATCGCGATTTCTGAGGTTTTCCAGGTCAAAAATCTCGATTTTAAAACTTTTTTTGGGTGGAAAATATGATTTTTGAACTTTTTTTAAACCAAAAAAGCTCGATTTTCAAAGTTTTTTGAGTAAAAAATTTTTATTTTTCATGTAAAAAGAGCTAGAAATAATAATTTTTGAGGGTTTCTAGATCAAAAATTGCAATTTTCGAGCATTTTTAGCTCGAAAATCACTCAAATTCTCAAAGAATARTCCATTTTTCACTGTAAAATGAGCCAAAAATGACGATTTTCGGGGATTTTTGGGTCATAACCCTTGCTTTCTGAGCTTTTTTGGGCAGAAAATCACTCAAATTCTCAAAAAAATGTTTCATGTTTCATGTAAAATGAGCCAAAAATGACAATTTTCGACCTTTTTTAAGTGAAAATTGCAATTTTTCAGCATTTTTAGGTCGAAAATCTCTCAAAACCTTGATTTTTTCACTGAAACTACAGTTTTTCATCGATTTTGAGCACAAACCTCTTCAAAAGTGGTGATGTTGAGCGTGTTGAAGTGACCCATAAAGTTGACACCAGACTTCTCGGTCAGCGGGAGGAATCTGCGAGATTTGGGCATTTTTTGGGGGGTTATTAGGTCGGCAAATTGGGTTTTAGGCTCAAATTTCCTGATTTTTGGACCATTTTCTGGCCTAAAAATCGAAAAAATCGACATTTTTGTGCAAGAAAATCGATTTTCAAGCTCTGAAAATTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTTGAGGGTTTCTAGATCA</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGGTCGAAAATTGTCAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATTTTTGAGGGTTTCTAGATCAAAAATTGCAATTTTCGAGCATTTTTAGCTCGAAAATCACTCAAATTCTCAAAGAATACTCCATTTTTCACTGTAAAATGAGCCAAAAATGACGATTTTCGGGGATTTTTGGGTCATAACCCTTGCTTTCTGAGCTTTTTTGGGCAGAAAATCACTCAAATTCTCAAAAAAATGTTTCATGTTTCATGTAAAATGAGCCAAAAATGACAATTTTCGACCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>AATTTTTGAGGGTTTCTAGATCAAAAATTGCAATTTTCGAGCATTTTTAGCTCGAAAATCACTCAAATTCTCAAAGAATARTCCATTTTTCACTGTAAAATGAGCCAAAAATGACGATTTTCGGGGATTTTTGGGTCATAACCCTTGCTTTCTGAGCTTTTTTGGGCAGAAAATCACTCAAATTCTCAAAAAAATGTTTCATGTTTCATGTAAAATGAGCCAAAAATGACAATTTTCGACCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29325</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>93163</contig_pos>
        <strand>+</strand>
        <context>TTGTGAGAAA[C/T]GACATTTCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATGCTCGAAAAATTGCACAGTTCGACGGAAGAGACGGTTTTGTGAGAAA</left_flank>
        <right_flank>GACATTTCTGAAAGAAGTTTAAAGTAAATCAAGGTTATCTCGGTTCGTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACTTCTCCGCATCATACCGTATCAACTCGAACAATCCATTCAACTCTAGTTCTTTAGTTCTCAAATAGATCGCCACCACTTTCTGAACCGGCAGATTTTTTGTGTCATCTGTGAGAAATTTGGAGTAAGCCTTTTGTTGCATTTGTGATAAGAGGTCTTGTTTGAAAATGTATTGATCATTCTTCAAGCTGGTGTAGATGTTAGGAGGGATCTGAAAATACAATTTAGGTAGAAAATTCCTTTGTTTAATTGTCGATTACCACTGGATATGGCGTGGAGAGTTCGGTGAGAAACTTGTTCAGATTTCCGGGAAAGTTTCGAAAGTTTTCGACTTGTTTGAACAGTGGTCCCACTCCTCCGTAATAGTAATTGAGAATGGGATCGGTGGTTTCTCCAGTTGGCTCTCCATCGATATAGAATATCATGCCCCAGTGCTCTTCTGGCAGATATGCTCGAAAAATTGCACAGTTCGACGGAAGAGACGGTTTTGTGAGAAACGACATTTCTGAAAGAAGTTTAAAGTAAATCAAGGTTATCTCGGTTCGTATAAGACATATGGAAGATTAGTTAACTGACAAAATATTTCTGATATTATGATAAACATTTTATCAGTGGACTAATTTTTAATATCTGTTACAAGAAATAAGATATAAGGGCTCAAAGTTGGCACTTATCATAAAAACATGTAATAGATTAACGCCTACTTCGTAAAGTTTGAGCCTAATTATCTTAATTCCTATGAAAGATATCAAAAATTTGTCAACTGATGAAATTTTGATGATATCATGCTAAACAGTTTATCAGTTGACCGCTTTTTGATATCTTTTACAGGAAATGAGATGTACGGGCTTAAAGTTGACACTTATCATTAAACCTGTAATAGAAGCACCTTAACATGGTCAAGTTTGAGCTCAATTATCTTGGTTCCTATGAGAGATATCAAAAATCTGTCAACTAACAAAATATTTCTGATATTATGATAAGAATTTTACCAGTTG</canonical>
            <polymorphic>GAACTTCTCCGCATCATACCGTATCAACTCGAACAATCCATTCAACTCTAGTTCTTTAGTTCTCAAATAGATCGCCACCACTTTCTGAACCGGCAGATTTTTTGTGTCATCTGTGAGAAATTTGGAGTAAGCCTTTTGTTGCATTTGTGATAAGAGGTCTTGTTTGAAAATGTATTGATCATTCTTCAAGCTGGTGTAGATGTTAGGAGGGATCTGAAAATACAATTTAGGTAGAAAATTCCTTTGTTTAATTGTCGATTACCACTGGATATGGCGTGGAGAGTTCGGTGAGAAACTTGTTCAGATTTCCGGGAAAGTTTCGAAAGTTTTCGACTTGTTTGAACAGTGGTCCCACTCCTCCGTAATAGTAATTGAGAATGGGATCGGTGGTTTCTCCAGTTGGCTCTCCATCGATATAGAATATCATGCCCCAGTGCTCTTCTGGCAGATATGCTCGAAAAATTGCACAGTTCGACGGAAGAGACGGTTTTGTGAGAAAYGACATTTCTGAAAGAAGTTTAAAGTAAATCAAGGTTATCTCGGTTCGTATAAGACATATGGAAGATTAGTTAACTGACAAAATATTTCTGATATTATGATAAACATTTTATCAGTGGACTAATTTTTAATATCTGTTACAAGAAATAAGATATAAGGGCTCAAAGTTGGCACTTATCATAAAAACATGTAATAGATTAACGCCTACTTCGTAAAGTTTGAGCCTAATTATCTTAATTCCTATGAAAGATATCAAAAATTTGTCAACTGATGAAATTTTGATGATATCATGCTAAACAGTTTATCAGTTGACCGCTTTTTGATATCTTTTACAGGAAATGAGATGTACGGGCTTAAAGTTGACACTTATCATTAAACCTGTAATAGAAGCACCTTAACATGGTCAAGTTTGAGCTCAATTATCTTGGTTCCTATGAGAGATATCAAAAATCTGTCAACTAACAAAATATTTCTGATATTATGATAAGAATTTTACCAGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATATAGAATATCATGCCCCAGT</pcr_primer_p1>
		<pcr_primer_p2>GTGTTCCATTGTATTTGACCTAA</pcr_primer_p2>
		<pcr_amplicon_size>862</pcr_amplicon_size>
		<canonical_amplicon>GATATAGAATATCATGCCCCAGTGCTCTTCTGGCAGATATGCTCGAAAAATTGCACAGTTCGACGGAAGAGACGGTTTTGTGAGAAACGACATTTCTGAAAGAAGTTTAA</canonical_amplicon>
		<polymorphic_amplicon>GATATAGAATATCATGCCCCAGTGCTCTTCTGGCAGATATGCTCGAAAAATTGCACAGTTCGACGGAAGAGACGGTTTTGTGAGAAAYGACATTTCTGAAAGAAGTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29326</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>94982</contig_pos>
        <strand>+</strand>
        <context>AAAATCAGAT[A/G]AAAAATTCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAATTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGAT</left_flank>
        <right_flank>AAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTATGGTCCTTTTCCGGAAGAAAAAATGTCAAAAATGGTCATTTTTGAAAGTTTTTTACAGAAAAATCTATCTCCTGTTTCAGTTTTTGACATTCCTAGGAGTTCTATAGCTCAAAAAAACCGCAATTATTTTCTCTACATTTTCTATGGATGAATTTTCAATTCGCCTGATAAAACTTTTTTTATAATCAAAAAACAACGCAAAAATGCGATTTTGTGCAATTTCATGAGGTTTTTGAATTATAAAAAAAGTTTTATCAGACAAATTAAAAATTCATCCATAGAAAATGTAGAGAAAATAACTGCGGTTTTTTTGAGCTATATAACTCCTAAAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATTACCATTTTTAACATTTTTTCTTCCGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATGAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTATCTGAAAAAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTACTTCGATCTTTCTGGTCTGTAATACATCCATGCATTTTCGGGTGCTTAGATTTTGTAGTCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCGGATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTAAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAGAGGACAAACATGGGAGTGAGTTTCA</canonical>
            <polymorphic>TGTATGGTCCTTTTCCGGAAGAAAAAATGTCAAAAATGGTCATTTTTGAAAGTTTTTTACAGAAAAATCTATCTCCTGTTTCAGTTTTTGACATTCCTAGGAGTTCTATAGCTCAAAAAAACCGCAATTATTTTCTCTACATTTTCTATGGATGAATTTTCAATTCGCCTGATAAAACTTTTTTTATAATCAAAAAACAACGCAAAAATGCGATTTTGTGCAATTTCATGAGGTTTTTGAATTATAAAAAAAGTTTTATCAGACAAATTAAAAATTCATCCATAGAAAATGTAGAGAAAATAACTGCGGTTTTTTTGAGCTATATAACTCCTAAAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATTACCATTTTTAACATTTTTTCTTCCGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATRAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTATCTGAAAAAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTACTTCGATCTTTCTGGTCTGTAATACATCCATGCATTTTCGGGTGCTTAGATTTTGTAGTCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCGGATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTAAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAGAGGACAAACATGGGAGTGAGTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGACCATACATGAATCTATAACC</pcr_primer_p1>
		<pcr_primer_p2>GTACCAAAATATCAGCCCAATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGGACCATACATGAATCTATAACCACTAATTAATTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATGAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTATCTGAAAAAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTAC</canonical_amplicon>
		<polymorphic_amplicon>AGGACCATACATGAATCTATAACCACTAATTAATTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATRAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTATCTGAAAAAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29327</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>95091</contig_pos>
        <strand>+</strand>
        <context>GGGAGAGCGT[G/T]TATCTGAAAR</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGT</left_flank>
        <right_flank>TATCTGAAAAAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTCAAAAAAACCGCAATTATTTTCTCTACATTTTCTATGGATGAATTTTCAATTCGCCTGATAAAACTTTTTTTATAATCAAAAAACAACGCAAAAATGCGATTTTGTGCAATTTCATGAGGTTTTTGAATTATAAAAAAAGTTTTATCAGACAAATTAAAAATTCATCCATAGAAAATGTAGAGAAAATAACTGCGGTTTTTTTGAGCTATATAACTCCTAAAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATTACCATTTTTAACATTTTTTCTTCCGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATGAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTATCTGAAAAAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTACTTCGATCTTTCTGGTCTGTAATACATCCATGCATTTTCGGGTGCTTAGATTTTGTAGTCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCGGATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTAAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAGAGGACAAACATGGGAGTGAGTTTCAAAATTAATGTTTCAAAGTTTAAAAGTGGACACTAATGGGGTTGTTCAGTGAGAAGTAAACCAGCAATATGCTGGCCCCGCAACGATCAAAATTGCTGAAGTTTTCTAGG</canonical>
            <polymorphic>AGCTCAAAAAAACCGCAATTATTTTCTCTACATTTTCTATGGATGAATTTTCAATTCGCCTGATAAAACTTTTTTTATAATCAAAAAACAACGCAAAAATGCGATTTTGTGCAATTTCATGAGGTTTTTGAATTATAAAAAAAGTTTTATCAGACAAATTAAAAATTCATCCATAGAAAATGTAGAGAAAATAACTGCGGTTTTTTTGAGCTATATAACTCCTAAAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATTACCATTTTTAACATTTTTTCTTCCGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATGAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTKTATCTGAAAAAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTACTTCGATCTTTCTGGTCTGTAATACATCCATGCATTTTCGGGTGCTTAGATTTTGTAGTCTTTGCAAGTCTGTTATACACCACATGGTATATTTTCTTCTCTTCTCTTCTTTCTCGGATCACCAACACATTCATCACTTTGAATGTTGCCTTCTCCTCTTTCCCTTCTCCCTAAATCTCTCACTTCGCTGAACTATATCATTTAAACTTAGCAATAGAAGTAGTGACCAGCAGCCATTTGTTTCGGTCTTTTTACCCACCGTTTTTGCAGTCCTATTCGCTGAAAATTCTGAAATTTTCTTCTGCAGAGGACAAACATGGGAGTGAGTTTCAAAATTAATGTTTCAAAGTTTAAAAGTGGACACTAATGGGGTTGTTCAGTGAGAAGTAAACCAGCAATATGCTGGCCCCGCAACGATCAAAATTGCTGAAGTTTTCTAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>225 111 103 67 61 59 50 46 43 43 39 35 34 33 19 10 9 6 4 3</canonical_bands>
                <polymorphic_bands>225 113 111 67 61 59 50 46 43 43 39 35 34 33 19 9 6 4 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAAATTATGGTTTTAGACCTG</pcr_primer_p1>
		<pcr_primer_p2>ATACCATGTGGTGTATAACAGACT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTATCTGAAAAAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTACTTCGATCTTTCTGGTCTGTAATACATCCATGCATTTTCGGGTGCTTAGATTTTGTAGTCTTTGCAAGTCTGTTATACACCACATGGTAT</canonical_amplicon>
		<polymorphic_amplicon>CTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTKTATCTGAAAAAAAAAGTTATGAAATTTAACCCATAATATATTGGGCTGATATTTTGGTACTTCGATCTTTCTGGTCTGTAATACATCCATGCATTTTCGGGTGCTTAGATTTTGTAGTCTTTGCAAGTCTGTTATACACCACATGGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29328</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>110058</contig_pos>
        <strand>+</strand>
        <context>ACCACTGTCC[G/T]ATACTTATCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAGCTCAAAGTGCACATTACCTGCGCCACACTTGTCCCCACCACTGTCC</left_flank>
        <right_flank>ATACTTATCCAGATTCTCCAACTGCCACAACGTATAATTACTATTGATAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTAACTCGTATTCTTATACTGTGACCCCAGTACTGTAAGCCCTAGTTCGTATTTTTTTCATTCCATGACGTTTTCTGAACTTCTGATCCCCTCTAAAAATGTGGAATCTAATAAAGCAAATTGGTTCTCTTCTCCATCCTCTACACACCAAATAAACATTAATGATGCGTGGGCTTCTCTAAAAACGGAGTGGTTTCCTGTTTATTGGGTTTTTAAGGAAGTTCCTAGTGCAGAAGATGTTTTCAGAATTTTCAGATGAGCGTGTTTTGGTTTCTTATGAAGAATCTTCGTATAGAAACCCACCCTATACTTGAACTTTGAACTTAATTATCTCGATTTCTTCAAAATATGTCAAAAAGTAGCCAACTGATAAATTGATTATCATAACATAACCAATATTTTTTTCAGTTGACATATTTTTGGTATCTCTCATAGGAATAGAGATAACTGAGCTCAAAGTGCACATTACCTGCGCCACACTTGTCCCCACCACTGTCCGATACTTATCCAGATTCTCCAACTGCCACAACGTATAATTACTATTGATAGTGAAATTCGAGGTTATCTCAATATCGCGAATAGAAACCACCATACTAAACGGAATCAAATAGGCCAGAATACACATTGTAAATGCTCCAGAAGTCGGGAATCGAAGGGTTTTTAGGGAGATGGCACGGAAAACCATAGATAACATAATGGATAGAAATGAATTGACTGCAAAATGTACTGAAAGAATTCTGGTTGAAAGGATATATTCCAAAAAAGGTGAAGGTTCTCACACATCGTCACAAATATCATATAGCTCCACCAGTGGCCCAGGAACTGGGAGAATCCAAGGTAGATATTCACGATTCGAAGATTTATGGAGATCACCCTGAAAACTTATTTTAAGCTCAATTATCTCGGTTCCAGTAGGAGATATCAAAAATGTGACAACTGATGAAATGTTAGTGATATTGTGATAAATACTTTATCAGTTGACATGTTTTGGATATCTTT</canonical>
            <polymorphic>CCTAACTCGTATTCTTATACTGTGACCCCAGTACTGTAAGCCCTAGTTCGTATTTTTTTCATTCCATGACGTTTTCTGAACTTCTGATCCCCTCTAAAAATGTGGAATCTAATAAAGCAAATTGGTTCTCTTCTCCATCCTCTACACACCAAATAAACATTAATGATGCGTGGGCTTCTCTAAAAACGGAGTGGTTTCCTGTTTATTGGGTTTTTAAGGAAGTTCCTAGTGCAGAAGATGTTTTCAGAATTTTCAGATGAGCGTGTTTTGGTTTCTTATGAAGAATCTTCGTATAGAAACCCACCCTATACTTGAACTTTGAACTTAATTATCTCGATTTCTTCAAAATATGTCAAAAAGTAGCCAACTGATAAATTGATTATCATAACATAACCAATATTTTTTTCAGTTGACATATTTTTGGTATCTCTCATAGGAATAGAGATAACTGAGCTCAAAGTGCACATTACCTGCGCCACACTTGTCCCCACCACTGTCCKATACTTATCCAGATTCTCCAACTGCCACAACGTATAATTACTATTGATAGTGAAATTCGAGGTTATCTCAATATCGCGAATAGAAACCACCATACTAAACGGAATCAAATAGGCCAGAATACACATTGTAAATGCTCCAGAAGTCGGGAATCGAAGGGTTTTTAGGGAGATGGCACGGAAAACCATAGATAACATAATGGATAGAAATGAATTGACTGCAAAATGTACTGAAAGAATTCTGGTTGAAAGGATATATTCCAAAAAAGGTGAAGGTTCTCACACATCGTCACAAATATCATATAGCTCCACCAGTGGCCCAGGAACTGGGAGAATCCAAGGTAGATATTCACGATTCGAAGATTTATGGAGATCACCCTGAAAACTTATTTTAAGCTCAATTATCTCGGTTCCAGTAGGAGATATCAAAAATGTGACAACTGATGAAATGTTAGTGATATTGTGATAAATACTTTATCAGTTGACATGTTTTGGATATCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATNNNNATC</site>
                <isoschizomers>
                    <enzyme>BsaBI</enzyme>
                    <enzyme>Bse8I</enzyme>
                    <enzyme>BseJI</enzyme>
                    <enzyme>BsiBI</enzyme>
                    <enzyme>BsrBRI</enzyme>
                    <enzyme>MamI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>501 244 161 77 9 8</canonical_bands>
                <polymorphic_bands>745 161 77 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGTGTTTTGGTTTCTTATG</pcr_primer_p1>
		<pcr_primer_p2>TAACCTCGAATTTCACTATCAAT</pcr_primer_p2>
		<pcr_amplicon_size>305</pcr_amplicon_size>
		<canonical_amplicon>GCGTGTTTTGGTTTCTTATGAAGAATCTTCGTATAGAAACCCACCCTATACTTGAACTTTGAACTTAATTATCTCGATTTCTTCAAAATATGTCAAAAAGTAGCCAACTGATAAATTGATTATCATAACATAACCAATATTTTTTTCAGTTGACATATTTTTGGTATCTCTCATAGGAATAGAGATAACTGAGCTCAAAGTGCACATTACCTGCGCCACACTTGTCCCCACCACTGTCCGATACTTATCCAGATTCTCCAACTGCCACAACGTATAATTACTATTGATAGTGAAATTCGAGGTTA</canonical_amplicon>
		<polymorphic_amplicon>GCGTGTTTTGGTTTCTTATGAAGAATCTTCGTATAGAAACCCACCCTATACTTGAACTTTGAACTTAATTATCTCGATTTCTTCAAAATATGTCAAAAAGTAGCCAACTGATAAATTGATTATCATAACATAACCAATATTTTTTTCAGTTGACATATTTTTGGTATCTCTCATAGGAATAGAGATAACTGAGCTCAAAGTGCACATTACCTGCGCCACACTTGTCCCCACCACTGTCCKATACTTATCCAGATTCTCCAACTGCCACAACGTATAATTACTATTGATAGTGAAATTCGAGGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29329</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>110281</contig_pos>
        <strand>+</strand>
        <context>TGACTGCAAA[A/G]TGTACTGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCACGGAAAACCATAGATAACATAATGGATAGAAATGAATTGACTGCAAA</left_flank>
        <right_flank>TGTACTGAAAGAATTCTGGTTGAAAGGATATATTCCAAAAAAGGTGAAGG</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTAGTGCAGAAGATGTTTTCAGAATTTTCAGATGAGCGTGTTTTGGTTTCTTATGAAGAATCTTCGTATAGAAACCCACCCTATACTTGAACTTTGAACTTAATTATCTCGATTTCTTCAAAATATGTCAAAAAGTAGCCAACTGATAAATTGATTATCATAACATAACCAATATTTTTTTCAGTTGACATATTTTTGGTATCTCTCATAGGAATAGAGATAACTGAGCTCAAAGTGCACATTACCTGCGCCACACTTGTCCCCACCACTGTCCGATACTTATCCAGATTCTCCAACTGCCACAACGTATAATTACTATTGATAGTGAAATTCGAGGTTATCTCAATATCGCGAATAGAAACCACCATACTAAACGGAATCAAATAGGCCAGAATACACATTGTAAATGCTCCAGAAGTCGGGAATCGAAGGGTTTTTAGGGAGATGGCACGGAAAACCATAGATAACATAATGGATAGAAATGAATTGACTGCAAAATGTACTGAAAGAATTCTGGTTGAAAGGATATATTCCAAAAAAGGTGAAGGTTCTCACACATCGTCACAAATATCATATAGCTCCACCAGTGGCCCAGGAACTGGGAGAATCCAAGGTAGATATTCACGATTCGAAGATTTATGGAGATCACCCTGAAAACTTATTTTAAGCTCAATTATCTCGGTTCCAGTAGGAGATATCAAAAATGTGACAACTGATGAAATGTTAGTGATATTGTGATAAATACTTTATCAGTTGACATGTTTTGGATATCTTTCATAGGAACCGAGATAACCGTACTCAAAGTGAACTTCTCCACTAACCTCGGTACAGTTAACAGAAAACATATTGAATACAGCAACTGTGTGATAGAAGTGTTCGCCAGAAATACAGTATACGGAGTCAGGCATGGCGGACTTTTGAAAAATATGAGAAACAATAAAAAGGCATTAAACAGTACACCCAAAGTAGATACAACAGATGCATATGAAATATAGAGT</canonical>
            <polymorphic>TCCTAGTGCAGAAGATGTTTTCAGAATTTTCAGATGAGCGTGTTTTGGTTTCTTATGAAGAATCTTCGTATAGAAACCCACCCTATACTTGAACTTTGAACTTAATTATCTCGATTTCTTCAAAATATGTCAAAAAGTAGCCAACTGATAAATTGATTATCATAACATAACCAATATTTTTTTCAGTTGACATATTTTTGGTATCTCTCATAGGAATAGAGATAACTGAGCTCAAAGTGCACATTACCTGCGCCACACTTGTCCCCACCACTGTCCGATACTTATCCAGATTCTCCAACTGCCACAACGTATAATTACTATTGATAGTGAAATTCGAGGTTATCTCAATATCGCGAATAGAAACCACCATACTAAACGGAATCAAATAGGCCAGAATACACATTGTAAATGCTCCAGAAGTCGGGAATCGAAGGGTTTTTAGGGAGATGGCACGGAAAACCATAGATAACATAATGGATAGAAATGAATTGACTGCAAARTGTACTGAAAGAATTCTGGTTGAAAGGATATATTCCAAAAAAGGTGAAGGTTCTCACACATCGTCACAAATATCATATAGCTCCACCAGTGGCCCAGGAACTGGGAGAATCCAAGGTAGATATTCACGATTCGAAGATTTATGGAGATCACCCTGAAAACTTATTTTAAGCTCAATTATCTCGGTTCCAGTAGGAGATATCAAAAATGTGACAACTGATGAAATGTTAGTGATATTGTGATAAATACTTTATCAGTTGACATGTTTTGGATATCTTTCATAGGAACCGAGATAACCGTACTCAAAGTGAACTTCTCCACTAACCTCGGTACAGTTAACAGAAAACATATTGAATACAGCAACTGTGTGATAGAAGTGTTCGCCAGAAATACAGTATACGGAGTCAGGCATGGCGGACTTTTGAAAAATATGAGAAACAATAAAAAGGCATTAAACAGTACACCCAAAGTAGATACAACAGATGCATATGAAATATAGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATAGTGAAATTCGAGGTTATC</pcr_primer_p1>
		<pcr_primer_p2>ATATTTGTGACGATGTGTGAGA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TGATAGTGAAATTCGAGGTTATCTCAATATCGCGAATAGAAACCACCATACTAAACGGAATCAAATAGGCCAGAATACACATTGTAAATGCTCCAGAAGTCGGGAATCGAAGGGTTTTTAGGGAGATGGCACGGAAAACCATAGATAACATAATGGATAGAAATGAATTGACTGCAAAATGTACTGAAAGAATTCTGGTTGAAAGGATATATTCCAAAAAAGGTGAAGGTTCTCACACATCGTCACAAATAT</canonical_amplicon>
		<polymorphic_amplicon>TGATAGTGAAATTCGAGGTTATCTCAATATCGCGAATAGAAACCACCATACTAAACGGAATCAAATAGGCCAGAATACACATTGTAAATGCTCCAGAAGTCGGGAATCGAAGGGTTTTTAGGGAGATGGCACGGAAAACCATAGATAACATAATGGATAGAAATGAATTGACTGCAAARTGTACTGAAAGAATTCTGGTTGAAAGGATATATTCCAAAAAAGGTGAAGGTTCTCACACATCGTCACAAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29330</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>117932</contig_pos>
        <strand>+</strand>
        <context>GATATTTCTA[A/T]AATCGtcaac</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTTAAAATAGGGCGAAAATGTTTGCTCTTATTTTCTCGATATTTCTA</left_flank>
        <right_flank>AATCGTCAACTTTGAGCTCAATTATCTCGTCTCCTGTAAGAGATATCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCCTCAATCTGTTAGTTCGCAACCGTCGGTGAGTCAAACAGTGTTCACTTTTGCCCTTTTTTCTCTGCTCCTCTTTTCTCTGGTTTTCTATCTTTGTAGCCTCTTGCTAAGCCATTTTCACTCCCCTCTCTACACTTTTCTGGGTTAATCTTGGAGAGAGAAAGTTTGAAAACTTGAGTTTCTGGGCCAAATTATTTCTGTGTTTTTTTTTGTTTAGTGTTTTAAATTGTCTTGGGATTAGTCGTTTTTTTCTTGTATTGTCTGTTTTTTGGCAAGGAACCAACCAATTTTCATGGTGAATTGACTCAAAAGTACTATAATTTCATTTGAATTCAAATCGGTCCAGTTCTATAATCGTGTTCCGTCACAAGGTAGAACAAATTTGACAGTAAATTTTGAGACGAAATTTTTTTAATTTCAAATGTAAGTCTCAAGTGTTTTCAATTTTTTTTTTAAAATAGGGCGAAAATGTTTGCTCTTATTTTCTCGATATTTCTAGAATCGTCAACTTTGAGCTCAATTATCTCGTCTCCTGTAAGAGATATCAAAAAAAGTTCAATTGATAAATTGTTTATCACAATATCAACAACATTTTATCAGTTTACAGATTTTTGAAATCTATCACATGAACCGAGATAATTGTGCTCAAAGTTTCCTTCAGTTTTCAAATTATTTCAGTTTGGTGATCGCATTCCGTTACAAACCAGATTAGATTTGACCATAAATTTTAGGACAACATTTTTTGAATTTCAAATTTAAATCTTAAATTTGGGCTTTTCCGATTCGTTGAAAAATGTTTGCTTTTTTTTCGATATTTCTAGACTCAAGCAAGTTTACAAACTGTAGGCACTCTGCTAGAATGCCACTCAACTTTGAGCCCACAAATCTCATTTTCTACAAGATATGTCAAAACGTGTTCAACTAATAAATTGTTTATCATAATATCACCCACATTTTATACGTTGAGCACTTTTTGATATCTCTCAGAGGAACCGAGAT</canonical>
            <polymorphic>GTCCTCAATCTGTTAGTTCGCAACCGTCGGTGAGTCAAACAGTGTTCACTTTTGCCCTTTTTTCTCTGCTCCTCTTTTCTCTGGTTTTCTATCTTTGTAGCCTCTTGCTAAGCCATTTTCACTCCCCTCTCTACACTTTTCTGGGTTAATCTTGGAGAGAGAAAGTTTGAAAACTTGAGTTTCTGGGCCAAATTATTTCTGTGTTTTTTTTTGTTTAGTGTTTTAAATTGTCTTGGGATTAGTCGTTTTTTTCTTGTATTGTCTGTTTTTTGGCAAGGAACCAACCAATTTTCATGGTGAATTGACTCAAAAGTACTATAATTTCATTTGAATTCAAATCGGTCCAGTTCTATAATCGTGTTCCGTCACAAGGTAGAACAAATTTGACAGTAAATTTTGAGACGAAATTTTTTTAATTTCAAATGTAAGTCTCAAGTGTTTTCAATTTTTTTTTTAAAATAGGGCGAAAATGTTTGCTCTTATTTTCTCGATATTTCTAWAATCGTCAACTTTGAGCTCAATTATCTCGTCTCCTGTAAGAGATATCAAAAAAAGTTCAATTGATAAATTGTTTATCACAATATCAACAACATTTTATCAGTTTACAGATTTTTGAAATCTATCACATGAACCGAGATAATTGTGCTCAAAGTTTCCTTCAGTTTTCAAATTATTTCAGTTTGGTGATCGCATTCCGTTACAAACCAGATTAGATTTGACCATAAATTTTAGGACAACATTTTTTGAATTTCAAATTTAAATCTTAAATTTGGGCTTTTCCGATTCGTTGAAAAATGTTTGCTTTTTTTTCGATATTTCTAGACTCAAGCAAGTTTACAAACTGTAGGCACTCTGCTAGAATGCCACTCAACTTTGAGCCCACAAATCTCATTTTCTACAAGATATGTCAAAACGTGTTCAACTAATAAATTGTTTATCATAATATCACCCACATTTTATACGTTGAGCACTTTTTGATATCTCTCAGAGGAACCGAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>497 322 144 37</canonical_bands>
                <polymorphic_bands>819 144 37</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>282 272 196 178 40 32</canonical_bands>
                <polymorphic_bands>478 272 178 40 32</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>487 322 181 10</canonical_bands>
                <polymorphic_bands>487 332 181</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 282 218</canonical_bands>
                <polymorphic_bands>782 218</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>496 322 182</canonical_bands>
                <polymorphic_bands>818 182</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGTAAGTCTCAAGTGTTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>CGATCACCAAACTGAAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>AATGTAAGTCTCAAGTGTTTTCAATTTTTTTTTTAAAATAGGGCGAAAATGTTTGCTCTTATTTTCTCGATATTTCTAGAATCGTCAACTTTGAGCTCAATTATCTCGTCTCCTGTAAGAGATATCAAAAAAAGTTCAATTGATAAATTGTTTATCACAATATCAACAACATTTTATCAGTTTACAGATTTTTGAAATCTATCACATGAACCGAGATAATTGTGCTCAAAGTTTCCTTCAGTTTTCAAATTATTTCAGTTTGGTGATCG</canonical_amplicon>
		<polymorphic_amplicon>AATGTAAGTCTCAAGTGTTTTCAATTTTTTTTTTAAAATAGGGCGAAAATGTTTGCTCTTATTTTCTCGATATTTCTAWAATCGTCAACTTTGAGCTCAATTATCTCGTCTCCTGTAAGAGATATCAAAAAAAGTTCAATTGATAAATTGTTTATCACAATATCAACAACATTTTATCAGTTTACAGATTTTTGAAATCTATCACATGAACCGAGATAATTGTGCTCAAAGTTTCCTTCAGTTTTCAAATTATTTCAGTTTGGTGATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29331</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>117987</contig_pos>
        <strand></strand>
        <context>atcaaaaaaa[G/T]ttcaattgat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTCAACTTTGAGCTCAATTATCTCGTCTCCTGTAAGAGATATCAAAAAAA</left_flank>
        <right_flank>TTCAATTGATAAATTGTTTATCACAATATCAACAACATTTTATCAGTTTA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTTTTTCTCTGCTCCTCTTTTCTCTGGTTTTCTATCTTTGTAGCCTCTTGCTAAGCCATTTTCACTCCCCTCTCTACACTTTTCTGGGTTAATCTTGGAGAGAGAAAGTTTGAAAACTTGAGTTTCTGGGCCAAATTATTTCTGTGTTTTTTTTTGTTTAGTGTTTTAAATTGTCTTGGGATTAGTCGTTTTTTTCTTGTATTGTCTGTTTTTTGGCAAGGAACCAACCAATTTTCATGGTGAATTGACTCAAAAGTACTATAATTTCATTTGAATTCAAATCGGTCCAGTTCTATAATCGTGTTCCGTCACAAGGTAGAACAAATTTGACAGTAAATTTTGAGACGAAATTTTTTTAATTTCAAATGTAAGTCTCAAGTGTTTTCAATTTTTTTTTTAAAATAGGGCGAAAATGTTTGCTCTTATTTTCTCGATATTTCTAGAATCGTCAACTTTGAGCTCAATTATCTCGTCTCCTGTAAGAGATATCAAAAAAAGTTCAATTGATAAATTGTTTATCACAATATCAACAACATTTTATCAGTTTACAGATTTTTGAAATCTATCACATGAACCGAGATAATTGTGCTCAAAGTTTCCTTCAGTTTTCAAATTATTTCAGTTTGGTGATCGCATTCCGTTACAAACCAGATTAGATTTGACCATAAATTTTAGGACAACATTTTTTGAATTTCAAATTTAAATCTTAAATTTGGGCTTTTCCGATTCGTTGAAAAATGTTTGCTTTTTTTTCGATATTTCTAGACTCAAGCAAGTTTACAAACTGTAGGCACTCTGCTAGAATGCCACTCAACTTTGAGCCCACAAATCTCATTTTCTACAAGATATGTCAAAACGTGTTCAACTAATAAATTGTTTATCATAATATCACCCACATTTTATACGTTGAGCACTTTTTGATATCTCTCAGAGGAACCGAGATAATTGAGCTCAAAGTTAATGGTTCTCAAAATTAACAGTGTGCCTCTATTCTAGGA</canonical>
            <polymorphic>CCTTTTTTCTCTGCTCCTCTTTTCTCTGGTTTTCTATCTTTGTAGCCTCTTGCTAAGCCATTTTCACTCCCCTCTCTACACTTTTCTGGGTTAATCTTGGAGAGAGAAAGTTTGAAAACTTGAGTTTCTGGGCCAAATTATTTCTGTGTTTTTTTTTGTTTAGTGTTTTAAATTGTCTTGGGATTAGTCGTTTTTTTCTTGTATTGTCTGTTTTTTGGCAAGGAACCAACCAATTTTCATGGTGAATTGACTCAAAAGTACTATAATTTCATTTGAATTCAAATCGGTCCAGTTCTATAATCGTGTTCCGTCACAAGGTAGAACAAATTTGACAGTAAATTTTGAGACGAAATTTTTTTAATTTCAAATGTAAGTCTCAAGTGTTTTCAATTTTTTTTTTAAAATAGGGCGAAAATGTTTGCTCTTATTTTCTCGATATTTCTAGAATCGTCAACTTTGAGCTCAATTATCTCGTCTCCTGTAAGAGATATCAAAAAAAKTTCAATTGATAAATTGTTTATCACAATATCAACAACATTTTATCAGTTTACAGATTTTTGAAATCTATCACATGAACCGAGATAATTGTGCTCAAAGTTTCCTTCAGTTTTCAAATTATTTCAGTTTGGTGATCGCATTCCGTTACAAACCAGATTAGATTTGACCATAAATTTTAGGACAACATTTTTTGAATTTCAAATTTAAATCTTAAATTTGGGCTTTTCCGATTCGTTGAAAAATGTTTGCTTTTTTTTCGATATTTCTAGACTCAAGCAAGTTTACAAACTGTAGGCACTCTGCTAGAATGCCACTCAACTTTGAGCCCACAAATCTCATTTTCTACAAGATATGTCAAAACGTGTTCAACTAATAAATTGTTTATCATAATATCACCCACATTTTATACGTTGAGCACTTTTTGATATCTCTCAGAGGAACCGAGATAATTGAGCTCAAAGTTAATGGTTCTCAAAATTAACAGTGTGCCTCTATTCTAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGCTCTTATTTTCTCGATATT</pcr_primer_p1>
		<pcr_primer_p2>CAAATCTAATCTGGTTTGTAACG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTGCTCTTATTTTCTCGATATTTCTAGAATCGTCAACTTTGAGCTCAATTATCTCGTCTCCTGTAAGAGATATCAAAAAAAGTTCAATTGATAAATTGTTTATCACAATATCAACAACATTTTATCAGTTTACAGATTTTTGAAATCTATCACATGAACCGAGATAATTGTGCTCAAAGTTTCCTTCAGTTTTCAAATTATTTCAGTTTGGTGATCGCATTCCGTTACAAACCAGATTAGATTTG</canonical_amplicon>
		<polymorphic_amplicon>TTTGCTCTTATTTTCTCGATATTTCTAGAATCGTCAACTTTGAGCTCAATTATCTCGTCTCCTGTAAGAGATATCAAAAAAAKTTCAATTGATAAATTGTTTATCACAATATCAACAACATTTTATCAGTTTACAGATTTTTGAAATCTATCACATGAACCGAGATAATTGTGCTCAAAGTTTCCTTCAGTTTTCAAATTATTTCAGTTTGGTGATCGCATTCCGTTACAAACCAGATTAGATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29332</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>118944</contig_pos>
        <strand></strand>
        <context>TGTATTTGTA[A/C]GTTTTTATGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCGACACTTTTCTTAATTTGGAGCGTGTGGATAAGAATTTGTATTTGTA</left_flank>
        <right_flank>GTTTTTATGGAGCTAAATAATGGCTGTAGCCTGAAAAATCCCTGTTATGA</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTAATGGTTCTCAAAATTAACAGTGTGCCTCTATTCTAGGAAGTACGGTACTTTTCAAATATAAATTTTTGGAGATCTGGAAAACTTATGTACCTGGTTAACATCCCAAAACCGGAAACACAAAAGTTTTGCTAACCCCTTAACCTTGTTTTTTTCTGGAACTTTTGACAGTTATGTCACCTGCCACGTGGTACCAACAGGGAACTTCTCACTTGCCCATCTCGTCCGTTTCAGTCATTTTCCCCTTTTGTCTCTTATTTTTTGTATAGTCTTCTTGTCTTTTTTCTCCTATTTTTTTTCTCATTTAACTTCCCGGAAATTCAGAATCCCCAATTTCAGAGATCAATGGAAATGGACGATCAGAACGGTCACCCTCACTATCCGTCGCTTCTCAATGTCACCCACATTGATATGACTTCGCGAGCCGAAGACATTCGCGCCGGACTCATCGACACTTTTCTTAATTTGGAGCGTGTGGATAAGAATTTGTATTTGTAAGTTTTTATGGAGCTAAATAATGGCTGTAGCCTGAAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTTGCTCAAAGGACGCATCTCCCTTCCAGTTGTCTATGGGGGACAAGTCATCGGACAAGCCCTGTCCGCTGCCACAGCCACTGTCGACGTTGGATTCGTGCCCAACAGTCTTCACAGCTACTTTGTGCAATCCGGAAACGTGA</canonical>
            <polymorphic>AGTTAATGGTTCTCAAAATTAACAGTGTGCCTCTATTCTAGGAAGTACGGTACTTTTCAAATATAAATTTTTGGAGATCTGGAAAACTTATGTACCTGGTTAACATCCCAAAACCGGAAACACAAAAGTTTTGCTAACCCCTTAACCTTGTTTTTTTCTGGAACTTTTGACAGTTATGTCACCTGCCACGTGGTACCAACAGGGAACTTCTCACTTGCCCATCTCGTCCGTTTCAGTCATTTTCCCCTTTTGTCTCTTATTTTTTGTATAGTCTTCTTGTCTTTTTTCTCCTATTTTTTTTCTCATTTAACTTCCCGGAAATTCAGAATCCCCAATTTCAGAGATCAATGGAAATGGACGATCAGAACGGTCACCCTCACTATCCGTCGCTTCTCAATGTCACCCACATTGATATGACTTCGCGAGCCGAAGACATTCGCGCCGGACTCATCGACACTTTTCTTAATTTGGAGCGTGTGGATAAGAATTTGTATTTGTAMGTTTTTATGGAGCTAAATAATGGCTGTAGCCTGAAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTTGCTCAAAGGACGCATCTCCCTTCCAGTTGTCTATGGGGGACAAGTCATCGGACAAGCCCTGTCCGCTGCCACAGCCACTGTCGACGTTGGATTCGTGCCCAACAGTCTTCACAGCTACTTTGTGCAATCCGGAAACGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCAGAATCCCCAATTTC</pcr_primer_p1>
		<pcr_primer_p2>AATGTCATAACAGGGATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>AATTCAGAATCCCCAATTTCAGAGATCAATGGAAATGGACGATCAGAACGGTCACCCTCACTATCCGTCGCTTCTCAATGTCACCCACATTGATATGACTTCGCGAGCCGAAGACATTCGCGCCGGACTCATCGACACTTTTCTTAATTTGGAGCGTGTGGATAAGAATTTGTATTTGTAAGTTTTTATGGAGCTAAATAATGGCTGTAGCCTGAAAAATCCCTGTTATGACATT</canonical_amplicon>
		<polymorphic_amplicon>AATTCAGAATCCCCAATTTCAGAGATCAATGGAAATGGACGATCAGAACGGTCACCCTCACTATCCGTCGCTTCTCAATGTCACCCACATTGATATGACTTCGCGAGCCGAAGACATTCGCGCCGGACTCATCGACACTTTTCTTAATTTGGAGCGTGTGGATAAGAATTTGTATTTGTAMGTTTTTATGGAGCTAAATAATGGCTGTAGCCTGAAAAATCCCTGTTATGACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29333</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>119027</contig_pos>
        <strand></strand>
        <context>agatggcaca[C/T]tagcttttaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACA</left_flank>
        <right_flank>TAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTTATGTACCTGGTTAACATCCCAAAACCGGAAACACAAAAGTTTTGCTAACCCCTTAACCTTGTTTTTTTCTGGAACTTTTGACAGTTATGTCACCTGCCACGTGGTACCAACAGGGAACTTCTCACTTGCCCATCTCGTCCGTTTCAGTCATTTTCCCCTTTTGTCTCTTATTTTTTGTATAGTCTTCTTGTCTTTTTTCTCCTATTTTTTTTCTCATTTAACTTCCCGGAAATTCAGAATCCCCAATTTCAGAGATCAATGGAAATGGACGATCAGAACGGTCACCCTCACTATCCGTCGCTTCTCAATGTCACCCACATTGATATGACTTCGCGAGCCGAAGACATTCGCGCCGGACTCATCGACACTTTTCTTAATTTGGAGCGTGTGGATAAGAATTTGTATTTGTAAGTTTTTATGGAGCTAAATAATGGCTGTAGCCTGAAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTTGCTCAAAGGACGCATCTCCCTTCCAGTTGTCTATGGGGGACAAGTCATCGGACAAGCCCTGTCCGCTGCCACAGCCACTGTCGACGTTGGATTCGTGCCCAACAGTCTTCACAGCTACTTTGTGCAATCCGGAAACGTGAATCGTCCGATTCTCTACCAAGTGGATCGCATCCGTGACGGAAAGAGTTTCTGCACTCGTCTGGTGAAGGCGTTGCAAGATGGA</canonical>
            <polymorphic>AAACTTATGTACCTGGTTAACATCCCAAAACCGGAAACACAAAAGTTTTGCTAACCCCTTAACCTTGTTTTTTTCTGGAACTTTTGACAGTTATGTCACCTGCCACGTGGTACCAACAGGGAACTTCTCACTTGCCCATCTCGTCCGTTTCAGTCATTTTCCCCTTTTGTCTCTTATTTTTTGTATAGTCTTCTTGTCTTTTTTCTCCTATTTTTTTTCTCATTTAACTTCCCGGAAATTCAGAATCCCCAATTTCAGAGATCAATGGAAATGGACGATCAGAACGGTCACCCTCACTATCCGTCGCTTCTCAATGTCACCCACATTGATATGACTTCGCGAGCCGAAGACATTCGCGCCGGACTCATCGACACTTTTCTTAATTTGGAGCGTGTGGATAAGAATTTGTATTTGTAAGTTTTTATGGAGCTAAATAATGGCTGTAGCCTGAAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACAYTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTTGCTCAAAGGACGCATCTCCCTTCCAGTTGTCTATGGGGGACAAGTCATCGGACAAGCCCTGTCCGCTGCCACAGCCACTGTCGACGTTGGATTCGTGCCCAACAGTCTTCACAGCTACTTTGTGCAATCCGGAAACGTGAATCGTCCGATTCTCTACCAAGTGGATCGCATCCGTGACGGAAAGAGTTTCTGCACTCGTCTGGTGAAGGCGTTGCAAGATGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 339 161</canonical_bands>
                <polymorphic_bands>661 339</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>160 148 101 87 74 59 50 40 39 24 23 21 21 20 18 18 15 14 13 13 11 7 6 6 4 4 2 2</canonical_bands>
                <polymorphic_bands>160 148 101 87 74 59 50 42 39 24 23 21 21 20 18 18 15 14 13 13 11 7 6 6 4 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTGAAAAATCCCTGTTATG</pcr_primer_p1>
		<pcr_primer_p2>AAGTGACGAGCTCTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>331</pcr_amplicon_size>
		<canonical_amplicon>CCTGAAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTT</canonical_amplicon>
		<polymorphic_amplicon>CCTGAAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACAYTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29334</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>119083</contig_pos>
        <strand>+</strand>
        <context>atcaaaaagt[A/G]gakaactyat</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGT</left_flank>
        <right_flank>GACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTAACCTTGTTTTTTTCTGGAACTTTTGACAGTTATGTCACCTGCCACGTGGTACCAACAGGGAACTTCTCACTTGCCCATCTCGTCCGTTTCAGTCATTTTCCCCTTTTGTCTCTTATTTTTTGTATAGTCTTCTTGTCTTTTTTCTCCTATTTTTTTTCTCATTTAACTTCCCGGAAATTCAGAATCCCCAATTTCAGAGATCAATGGAAATGGACGATCAGAACGGTCACCCTCACTATCCGTCGCTTCTCAATGTCACCCACATTGATATGACTTCGCGAGCCGAAGACATTCGCGCCGGACTCATCGACACTTTTCTTAATTTGGAGCGTGTGGATAAGAATTTGTATTTGTAAGTTTTTATGGAGCTAAATAATGGCTGTAGCCTGAAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTTGCTCAAAGGACGCATCTCCCTTCCAGTTGTCTATGGGGGACAAGTCATCGGACAAGCCCTGTCCGCTGCCACAGCCACTGTCGACGTTGGATTCGTGCCCAACAGTCTTCACAGCTACTTTGTGCAATCCGGAAACGTGAATCGTCCGATTCTCTACCAAGTGGATCGCATCCGTGACGGAAAGAGTTTCTGCACTCGTCTGGTGAAGGCGTTGCAAGATGGAGAAGCCATCTTCACGGTGCAGATTTCATTCCATAGAGTGAGTCGGGGTTTTTACAA</canonical>
            <polymorphic>CCTTAACCTTGTTTTTTTCTGGAACTTTTGACAGTTATGTCACCTGCCACGTGGTACCAACAGGGAACTTCTCACTTGCCCATCTCGTCCGTTTCAGTCATTTTCCCCTTTTGTCTCTTATTTTTTGTATAGTCTTCTTGTCTTTTTTCTCCTATTTTTTTTCTCATTTAACTTCCCGGAAATTCAGAATCCCCAATTTCAGAGATCAATGGAAATGGACGATCAGAACGGTCACCCTCACTATCCGTCGCTTCTCAATGTCACCCACATTGATATGACTTCGCGAGCCGAAGACATTCGCGCCGGACTCATCGACACTTTTCTTAATTTGGAGCGTGTGGATAAGAATTTGTATTTGTAAGTTTTTATGGAGCTAAATAATGGCTGTAGCCTGAAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTRGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTTGCTCAAAGGACGCATCTCCCTTCCAGTTGTCTATGGGGGACAAGTCATCGGACAAGCCCTGTCCGCTGCCACAGCCACTGTCGACGTTGGATTCGTGCCCAACAGTCTTCACAGCTACTTTGTGCAATCCGGAAACGTGAATCGTCCGATTCTCTACCAAGTGGATCGCATCCGTGACGGAAAGAGTTTCTGCACTCGTCTGGTGAAGGCGTTGCAAGATGGAGAAGCCATCTTCACGGTGCAGATTTCATTCCATAGAGTGAGTCGGGGTTTTTACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>500 255 197 48</canonical_bands>
                <polymorphic_bands>548 255 197</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCCCTGTTATGACATTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTGACGAGCTCTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTRGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29335</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>119086</contig_pos>
        <strand>+</strand>
        <context>aaaaagtrga[G/T]aactyataaa</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGA</left_flank>
        <right_flank>AACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACCTTGTTTTTTTCTGGAACTTTTGACAGTTATGTCACCTGCCACGTGGTACCAACAGGGAACTTCTCACTTGCCCATCTCGTCCGTTTCAGTCATTTTCCCCTTTTGTCTCTTATTTTTTGTATAGTCTTCTTGTCTTTTTTCTCCTATTTTTTTTCTCATTTAACTTCCCGGAAATTCAGAATCCCCAATTTCAGAGATCAATGGAAATGGACGATCAGAACGGTCACCCTCACTATCCGTCGCTTCTCAATGTCACCCACATTGATATGACTTCGCGAGCCGAAGACATTCGCGCCGGACTCATCGACACTTTTCTTAATTTGGAGCGTGTGGATAAGAATTTGTATTTGTAAGTTTTTATGGAGCTAAATAATGGCTGTAGCCTGAAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTTGCTCAAAGGACGCATCTCCCTTCCAGTTGTCTATGGGGGACAAGTCATCGGACAAGCCCTGTCCGCTGCCACAGCCACTGTCGACGTTGGATTCGTGCCCAACAGTCTTCACAGCTACTTTGTGCAATCCGGAAACGTGAATCGTCCGATTCTCTACCAAGTGGATCGCATCCGTGACGGAAAGAGTTTCTGCACTCGTCTGGTGAAGGCGTTGCAAGATGGAGAAGCCATCTTCACGGTGCAGATTTCATTCCATAGAGTGAGTCGGGGTTTTTACAATTT</canonical>
            <polymorphic>TAACCTTGTTTTTTTCTGGAACTTTTGACAGTTATGTCACCTGCCACGTGGTACCAACAGGGAACTTCTCACTTGCCCATCTCGTCCGTTTCAGTCATTTTCCCCTTTTGTCTCTTATTTTTTGTATAGTCTTCTTGTCTTTTTTCTCCTATTTTTTTTCTCATTTAACTTCCCGGAAATTCAGAATCCCCAATTTCAGAGATCAATGGAAATGGACGATCAGAACGGTCACCCTCACTATCCGTCGCTTCTCAATGTCACCCACATTGATATGACTTCGCGAGCCGAAGACATTCGCGCCGGACTCATCGACACTTTTCTTAATTTGGAGCGTGTGGATAAGAATTTGTATTTGTAAGTTTTTATGGAGCTAAATAATGGCTGTAGCCTGAAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGAKAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTTGCTCAAAGGACGCATCTCCCTTCCAGTTGTCTATGGGGGACAAGTCATCGGACAAGCCCTGTCCGCTGCCACAGCCACTGTCGACGTTGGATTCGTGCCCAACAGTCTTCACAGCTACTTTGTGCAATCCGGAAACGTGAATCGTCCGATTCTCTACCAAGTGGATCGCATCCGTGACGGAAAGAGTTTCTGCACTCGTCTGGTGAAGGCGTTGCAAGATGGAGAAGCCATCTTCACGGTGCAGATTTCATTCCATAGAGTGAGTCGGGGTTTTTACAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>497 255 200 48</canonical_bands>
                <polymorphic_bands>545 255 200</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>419 255 200 78 48</canonical_bands>
                <polymorphic_bands>419 255 200 126</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCCCTGTTATGACATTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTGACGAGCTCTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGAKAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29336</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>119091</contig_pos>
        <strand>+</strand>
        <context>gtrgakaact[C/T]ataaaawgtt</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACT</left_flank>
        <right_flank>ATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTTTTTTCTGGAACTTTTGACAGTTATGTCACCTGCCACGTGGTACCAACAGGGAACTTCTCACTTGCCCATCTCGTCCGTTTCAGTCATTTTCCCCTTTTGTCTCTTATTTTTTGTATAGTCTTCTTGTCTTTTTTCTCCTATTTTTTTTCTCATTTAACTTCCCGGAAATTCAGAATCCCCAATTTCAGAGATCAATGGAAATGGACGATCAGAACGGTCACCCTCACTATCCGTCGCTTCTCAATGTCACCCACATTGATATGACTTCGCGAGCCGAAGACATTCGCGCCGGACTCATCGACACTTTTCTTAATTTGGAGCGTGTGGATAAGAATTTGTATTTGTAAGTTTTTATGGAGCTAAATAATGGCTGTAGCCTGAAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTTGCTCAAAGGACGCATCTCCCTTCCAGTTGTCTATGGGGGACAAGTCATCGGACAAGCCCTGTCCGCTGCCACAGCCACTGTCGACGTTGGATTCGTGCCCAACAGTCTTCACAGCTACTTTGTGCAATCCGGAAACGTGAATCGTCCGATTCTCTACCAAGTGGATCGCATCCGTGACGGAAAGAGTTTCTGCACTCGTCTGGTGAAGGCGTTGCAAGATGGAGAAGCCATCTTCACGGTGCAGATTTCATTCCATAGAGTGAGTCGGGGTTTTTACAATTTGACTA</canonical>
            <polymorphic>TTGTTTTTTTCTGGAACTTTTGACAGTTATGTCACCTGCCACGTGGTACCAACAGGGAACTTCTCACTTGCCCATCTCGTCCGTTTCAGTCATTTTCCCCTTTTGTCTCTTATTTTTTGTATAGTCTTCTTGTCTTTTTTCTCCTATTTTTTTTCTCATTTAACTTCCCGGAAATTCAGAATCCCCAATTTCAGAGATCAATGGAAATGGACGATCAGAACGGTCACCCTCACTATCCGTCGCTTCTCAATGTCACCCACATTGATATGACTTCGCGAGCCGAAGACATTCGCGCCGGACTCATCGACACTTTTCTTAATTTGGAGCGTGTGGATAAGAATTTGTATTTGTAAGTTTTTATGGAGCTAAATAATGGCTGTAGCCTGAAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTYATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTTGCTCAAAGGACGCATCTCCCTTCCAGTTGTCTATGGGGGACAAGTCATCGGACAAGCCCTGTCCGCTGCCACAGCCACTGTCGACGTTGGATTCGTGCCCAACAGTCTTCACAGCTACTTTGTGCAATCCGGAAACGTGAATCGTCCGATTCTCTACCAAGTGGATCGCATCCGTGACGGAAAGAGTTTCTGCACTCGTCTGGTGAAGGCGTTGCAAGATGGAGAAGCCATCTTCACGGTGCAGATTTCATTCCATAGAGTGAGTCGGGGTTTTTACAATTTGACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCCCTGTTATGACATTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTGACGAGCTCTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTYATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29337</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>119098</contig_pos>
        <strand>+</strand>
        <context>actyataaaa[A/T]gtttatcaty</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAA</left_flank>
        <right_flank>GTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTGGAACTTTTGACAGTTATGTCACCTGCCACGTGGTACCAACAGGGAACTTCTCACTTGCCCATCTCGTCCGTTTCAGTCATTTTCCCCTTTTGTCTCTTATTTTTTGTATAGTCTTCTTGTCTTTTTTCTCCTATTTTTTTTCTCATTTAACTTCCCGGAAATTCAGAATCCCCAATTTCAGAGATCAATGGAAATGGACGATCAGAACGGTCACCCTCACTATCCGTCGCTTCTCAATGTCACCCACATTGATATGACTTCGCGAGCCGAAGACATTCGCGCCGGACTCATCGACACTTTTCTTAATTTGGAGCGTGTGGATAAGAATTTGTATTTGTAAGTTTTTATGGAGCTAAATAATGGCTGTAGCCTGAAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTTGCTCAAAGGACGCATCTCCCTTCCAGTTGTCTATGGGGGACAAGTCATCGGACAAGCCCTGTCCGCTGCCACAGCCACTGTCGACGTTGGATTCGTGCCCAACAGTCTTCACAGCTACTTTGTGCAATCCGGAAACGTGAATCGTCCGATTCTCTACCAAGTGGATCGCATCCGTGACGGAAAGAGTTTCTGCACTCGTCTGGTGAAGGCGTTGCAAGATGGAGAAGCCATCTTCACGGTGCAGATTTCATTCCATAGAGTGAGTCGGGGTTTTTACAATTTGACTATTTTCAA</canonical>
            <polymorphic>TTTCTGGAACTTTTGACAGTTATGTCACCTGCCACGTGGTACCAACAGGGAACTTCTCACTTGCCCATCTCGTCCGTTTCAGTCATTTTCCCCTTTTGTCTCTTATTTTTTGTATAGTCTTCTTGTCTTTTTTCTCCTATTTTTTTTCTCATTTAACTTCCCGGAAATTCAGAATCCCCAATTTCAGAGATCAATGGAAATGGACGATCAGAACGGTCACCCTCACTATCCGTCGCTTCTCAATGTCACCCACATTGATATGACTTCGCGAGCCGAAGACATTCGCGCCGGACTCATCGACACTTTTCTTAATTTGGAGCGTGTGGATAAGAATTTGTATTTGTAAGTTTTTATGGAGCTAAATAATGGCTGTAGCCTGAAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAAWGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTTGCTCAAAGGACGCATCTCCCTTCCAGTTGTCTATGGGGGACAAGTCATCGGACAAGCCCTGTCCGCTGCCACAGCCACTGTCGACGTTGGATTCGTGCCCAACAGTCTTCACAGCTACTTTGTGCAATCCGGAAACGTGAATCGTCCGATTCTCTACCAAGTGGATCGCATCCGTGACGGAAAGAGTTTCTGCACTCGTCTGGTGAAGGCGTTGCAAGATGGAGAAGCCATCTTCACGGTGCAGATTTCATTCCATAGAGTGAGTCGGGGTTTTTACAATTTGACTATTTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCCCTGTTATGACATTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTGACGAGCTCTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAAWGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29338</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>119108</contig_pos>
        <strand>+</strand>
        <context>wgtttatcat[C/T]acytcagrma</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCAT</left_flank>
        <right_flank>ACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGACAGTTATGTCACCTGCCACGTGGTACCAACAGGGAACTTCTCACTTGCCCATCTCGTCCGTTTCAGTCATTTTCCCCTTTTGTCTCTTATTTTTTGTATAGTCTTCTTGTCTTTTTTCTCCTATTTTTTTTCTCATTTAACTTCCCGGAAATTCAGAATCCCCAATTTCAGAGATCAATGGAAATGGACGATCAGAACGGTCACCCTCACTATCCGTCGCTTCTCAATGTCACCCACATTGATATGACTTCGCGAGCCGAAGACATTCGCGCCGGACTCATCGACACTTTTCTTAATTTGGAGCGTGTGGATAAGAATTTGTATTTGTAAGTTTTTATGGAGCTAAATAATGGCTGTAGCCTGAAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTTGCTCAAAGGACGCATCTCCCTTCCAGTTGTCTATGGGGGACAAGTCATCGGACAAGCCCTGTCCGCTGCCACAGCCACTGTCGACGTTGGATTCGTGCCCAACAGTCTTCACAGCTACTTTGTGCAATCCGGAAACGTGAATCGTCCGATTCTCTACCAAGTGGATCGCATCCGTGACGGAAAGAGTTTCTGCACTCGTCTGGTGAAGGCGTTGCAAGATGGAGAAGCCATCTTCACGGTGCAGATTTCATTCCATAGAGTGAGTCGGGGTTTTTACAATTTGACTATTTTCAAGCTTCCGGTC</canonical>
            <polymorphic>TTTTGACAGTTATGTCACCTGCCACGTGGTACCAACAGGGAACTTCTCACTTGCCCATCTCGTCCGTTTCAGTCATTTTCCCCTTTTGTCTCTTATTTTTTGTATAGTCTTCTTGTCTTTTTTCTCCTATTTTTTTTCTCATTTAACTTCCCGGAAATTCAGAATCCCCAATTTCAGAGATCAATGGAAATGGACGATCAGAACGGTCACCCTCACTATCCGTCGCTTCTCAATGTCACCCACATTGATATGACTTCGCGAGCCGAAGACATTCGCGCCGGACTCATCGACACTTTTCTTAATTTGGAGCGTGTGGATAAGAATTTGTATTTGTAAGTTTTTATGGAGCTAAATAATGGCTGTAGCCTGAAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATYACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTTGCTCAAAGGACGCATCTCCCTTCCAGTTGTCTATGGGGGACAAGTCATCGGACAAGCCCTGTCCGCTGCCACAGCCACTGTCGACGTTGGATTCGTGCCCAACAGTCTTCACAGCTACTTTGTGCAATCCGGAAACGTGAATCGTCCGATTCTCTACCAAGTGGATCGCATCCGTGACGGAAAGAGTTTCTGCACTCGTCTGGTGAAGGCGTTGCAAGATGGAGAAGCCATCTTCACGGTGCAGATTTCATTCCATAGAGTGAGTCGGGGTTTTTACAATTTGACTATTTTCAAGCTTCCGGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCCCTGTTATGACATTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTGACGAGCTCTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATYACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29339</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>119111</contig_pos>
        <strand>+</strand>
        <context>ttatcatyac[C/T]tcagrmacat</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAAC</left_flank>
        <right_flank>TCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACAGTTATGTCACCTGCCACGTGGTACCAACAGGGAACTTCTCACTTGCCCATCTCGTCCGTTTCAGTCATTTTCCCCTTTTGTCTCTTATTTTTTGTATAGTCTTCTTGTCTTTTTTCTCCTATTTTTTTTCTCATTTAACTTCCCGGAAATTCAGAATCCCCAATTTCAGAGATCAATGGAAATGGACGATCAGAACGGTCACCCTCACTATCCGTCGCTTCTCAATGTCACCCACATTGATATGACTTCGCGAGCCGAAGACATTCGCGCCGGACTCATCGACACTTTTCTTAATTTGGAGCGTGTGGATAAGAATTTGTATTTGTAAGTTTTTATGGAGCTAAATAATGGCTGTAGCCTGAAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTTGCTCAAAGGACGCATCTCCCTTCCAGTTGTCTATGGGGGACAAGTCATCGGACAAGCCCTGTCCGCTGCCACAGCCACTGTCGACGTTGGATTCGTGCCCAACAGTCTTCACAGCTACTTTGTGCAATCCGGAAACGTGAATCGTCCGATTCTCTACCAAGTGGATCGCATCCGTGACGGAAAGAGTTTCTGCACTCGTCTGGTGAAGGCGTTGCAAGATGGAGAAGCCATCTTCACGGTGCAGATTTCATTCCATAGAGTGAGTCGGGGTTTTTACAATTTGACTATTTTCAAGCTTCCGGTCCGT</canonical>
            <polymorphic>TGACAGTTATGTCACCTGCCACGTGGTACCAACAGGGAACTTCTCACTTGCCCATCTCGTCCGTTTCAGTCATTTTCCCCTTTTGTCTCTTATTTTTTGTATAGTCTTCTTGTCTTTTTTCTCCTATTTTTTTTCTCATTTAACTTCCCGGAAATTCAGAATCCCCAATTTCAGAGATCAATGGAAATGGACGATCAGAACGGTCACCCTCACTATCCGTCGCTTCTCAATGTCACCCACATTGATATGACTTCGCGAGCCGAAGACATTCGCGCCGGACTCATCGACACTTTTCTTAATTTGGAGCGTGTGGATAAGAATTTGTATTTGTAAGTTTTTATGGAGCTAAATAATGGCTGTAGCCTGAAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACYTCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTTGCTCAAAGGACGCATCTCCCTTCCAGTTGTCTATGGGGGACAAGTCATCGGACAAGCCCTGTCCGCTGCCACAGCCACTGTCGACGTTGGATTCGTGCCCAACAGTCTTCACAGCTACTTTGTGCAATCCGGAAACGTGAATCGTCCGATTCTCTACCAAGTGGATCGCATCCGTGACGGAAAGAGTTTCTGCACTCGTCTGGTGAAGGCGTTGCAAGATGGAGAAGCCATCTTCACGGTGCAGATTTCATTCCATAGAGTGAGTCGGGGTTTTTACAATTTGACTATTTTCAAGCTTCCGGTCCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCCCTGTTATGACATTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTGACGAGCTCTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACYTCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29340</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>119116</contig_pos>
        <strand>+</strand>
        <context>atyacytcag[A/G]macattttat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAG</left_flank>
        <right_flank>AACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTATGTCACCTGCCACGTGGTACCAACAGGGAACTTCTCACTTGCCCATCTCGTCCGTTTCAGTCATTTTCCCCTTTTGTCTCTTATTTTTTGTATAGTCTTCTTGTCTTTTTTCTCCTATTTTTTTTCTCATTTAACTTCCCGGAAATTCAGAATCCCCAATTTCAGAGATCAATGGAAATGGACGATCAGAACGGTCACCCTCACTATCCGTCGCTTCTCAATGTCACCCACATTGATATGACTTCGCGAGCCGAAGACATTCGCGCCGGACTCATCGACACTTTTCTTAATTTGGAGCGTGTGGATAAGAATTTGTATTTGTAAGTTTTTATGGAGCTAAATAATGGCTGTAGCCTGAAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTTGCTCAAAGGACGCATCTCCCTTCCAGTTGTCTATGGGGGACAAGTCATCGGACAAGCCCTGTCCGCTGCCACAGCCACTGTCGACGTTGGATTCGTGCCCAACAGTCTTCACAGCTACTTTGTGCAATCCGGAAACGTGAATCGTCCGATTCTCTACCAAGTGGATCGCATCCGTGACGGAAAGAGTTTCTGCACTCGTCTGGTGAAGGCGTTGCAAGATGGAGAAGCCATCTTCACGGTGCAGATTTCATTCCATAGAGTGAGTCGGGGTTTTTACAATTTGACTATTTTCAAGCTTCCGGTCCGTCTGAA</canonical>
            <polymorphic>GTTATGTCACCTGCCACGTGGTACCAACAGGGAACTTCTCACTTGCCCATCTCGTCCGTTTCAGTCATTTTCCCCTTTTGTCTCTTATTTTTTGTATAGTCTTCTTGTCTTTTTTCTCCTATTTTTTTTCTCATTTAACTTCCCGGAAATTCAGAATCCCCAATTTCAGAGATCAATGGAAATGGACGATCAGAACGGTCACCCTCACTATCCGTCGCTTCTCAATGTCACCCACATTGATATGACTTCGCGAGCCGAAGACATTCGCGCCGGACTCATCGACACTTTTCTTAATTTGGAGCGTGTGGATAAGAATTTGTATTTGTAAGTTTTTATGGAGCTAAATAATGGCTGTAGCCTGAAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGRAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTTGCTCAAAGGACGCATCTCCCTTCCAGTTGTCTATGGGGGACAAGTCATCGGACAAGCCCTGTCCGCTGCCACAGCCACTGTCGACGTTGGATTCGTGCCCAACAGTCTTCACAGCTACTTTGTGCAATCCGGAAACGTGAATCGTCCGATTCTCTACCAAGTGGATCGCATCCGTGACGGAAAGAGTTTCTGCACTCGTCTGGTGAAGGCGTTGCAAGATGGAGAAGCCATCTTCACGGTGCAGATTTCATTCCATAGAGTGAGTCGGGGTTTTTACAATTTGACTATTTTCAAGCTTCCGGTCCGTCTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>306 177 162 153 97 63 24 15 3</canonical_bands>
                <polymorphic_bands>483 162 153 97 63 24 15 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCCCTGTTATGACATTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTGACGAGCTCTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGRAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29341</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>119117</contig_pos>
        <strand>+</strand>
        <context>tyacytcagr[A/C]acattttatc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGA</left_flank>
        <right_flank>ACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATGTCACCTGCCACGTGGTACCAACAGGGAACTTCTCACTTGCCCATCTCGTCCGTTTCAGTCATTTTCCCCTTTTGTCTCTTATTTTTTGTATAGTCTTCTTGTCTTTTTTCTCCTATTTTTTTTCTCATTTAACTTCCCGGAAATTCAGAATCCCCAATTTCAGAGATCAATGGAAATGGACGATCAGAACGGTCACCCTCACTATCCGTCGCTTCTCAATGTCACCCACATTGATATGACTTCGCGAGCCGAAGACATTCGCGCCGGACTCATCGACACTTTTCTTAATTTGGAGCGTGTGGATAAGAATTTGTATTTGTAAGTTTTTATGGAGCTAAATAATGGCTGTAGCCTGAAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTTGCTCAAAGGACGCATCTCCCTTCCAGTTGTCTATGGGGGACAAGTCATCGGACAAGCCCTGTCCGCTGCCACAGCCACTGTCGACGTTGGATTCGTGCCCAACAGTCTTCACAGCTACTTTGTGCAATCCGGAAACGTGAATCGTCCGATTCTCTACCAAGTGGATCGCATCCGTGACGGAAAGAGTTTCTGCACTCGTCTGGTGAAGGCGTTGCAAGATGGAGAAGCCATCTTCACGGTGCAGATTTCATTCCATAGAGTGAGTCGGGGTTTTTACAATTTGACTATTTTCAAGCTTCCGGTCCGTCTGAAA</canonical>
            <polymorphic>TTATGTCACCTGCCACGTGGTACCAACAGGGAACTTCTCACTTGCCCATCTCGTCCGTTTCAGTCATTTTCCCCTTTTGTCTCTTATTTTTTGTATAGTCTTCTTGTCTTTTTTCTCCTATTTTTTTTCTCATTTAACTTCCCGGAAATTCAGAATCCCCAATTTCAGAGATCAATGGAAATGGACGATCAGAACGGTCACCCTCACTATCCGTCGCTTCTCAATGTCACCCACATTGATATGACTTCGCGAGCCGAAGACATTCGCGCCGGACTCATCGACACTTTTCTTAATTTGGAGCGTGTGGATAAGAATTTGTATTTGTAAGTTTTTATGGAGCTAAATAATGGCTGTAGCCTGAAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAMACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTTGCTCAAAGGACGCATCTCCCTTCCAGTTGTCTATGGGGGACAAGTCATCGGACAAGCCCTGTCCGCTGCCACAGCCACTGTCGACGTTGGATTCGTGCCCAACAGTCTTCACAGCTACTTTGTGCAATCCGGAAACGTGAATCGTCCGATTCTCTACCAAGTGGATCGCATCCGTGACGGAAAGAGTTTCTGCACTCGTCTGGTGAAGGCGTTGCAAGATGGAGAAGCCATCTTCACGGTGCAGATTTCATTCCATAGAGTGAGTCGGGGTTTTTACAATTTGACTATTTTCAAGCTTCCGGTCCGTCTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCCCTGTTATGACATTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTGACGAGCTCTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAAACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCCCTGTTATGACATTTACAGTAAACATTCTAATAGATGGCACACTAGCTTTTAACCTTGAGCCAATTTATCTCGGTTCCAGTGAATGATATCAAAAAGTTGACAACTGATAAAATGTTTATCATAACATCAGAMACATTTTATCAGTTGACAAATGTTAGATATCTCTCACAGAAACCGAGATAATTGAGCTCAAATAGGGGTTCTAGGGAGGGCTTCTATTAGAGCGAACTTTAGATTCTCGATATAATTTCCAGCTAAAAGCCTTGATTAAAAAATCCAGCTGGTATTTTTACATACATTTTTTCAGAGCTCGTCACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29342</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>163036</contig_pos>
        <strand>+</strand>
        <context>CGCGAAGAGA[A/T]GCTAAAAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTATAAATTTCAGAAAACATGGGGTTCGCTTCCGCTTCTCGCGAAGAGA</left_flank>
        <right_flank>GCTAAAAATGATGAAGACGAATAAAACGAGAAAAACGACGAAGAACTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATAAACTGGAAAAGTTGAAACGGATTGCATCATTGACAGAAAATGGGGAATTGTGAGAGCATTTCGGACCGAAAATGATGCAAAAAGTCGAGAAAAATAGCTTAGAACCTCTGTTTTATGATTTTACACAGAAGAATGTTGGAGAAAATTCTCGAAACTTTTATCACGGGCTATTGCATCAACTGAAAACTCAAAATACACTTCTCAAGGCACTCCGAGACTCCGCCCATTTTGAAGTACGGTCGGCGCCAGGTCTCGCGACGATTTCATTAGAAAAGTGTGCGCGCGTTGCGAAACCGCCCCTTTTTGCAGCCTGCGGCAGAGTTTTTAGCCGATTTATTTACTAGACTATTTTATTCTTTGTGCAAAAAGAAGTGTTTAATTACTGAAAAAAGGAAATTTCATGTTTTTCGTCTTCTAAAAGCTATAGAAAACAAGTTTCCTAATTGTATAAATTTCAGAAAACATGGGGTTCGCTTCCGCTTCTCGCGAAGAGAAGCTAAAAATGATGAAGACGAATAAAACGAGAAAAACGACGAAGAACTTGAATCGTTTGGCGAAAAAGAAGAAGTTGTCCAGAGAAATTCGCGATGGAATGTCAGATATTAAAGCCAGAAAATCTGCTGACTTGCGGCAAAGAGCTGTTAATGTAAACACTATTTTCAACAAAGACAGAAAAAAATGAATTTTACAGATTGAAGACGATTTCATCGCCGACAGAGAAGCTCGCTACGAAAATGACGACGAGGAAGACTTGCCGTTGGATATGATGGATGCTGATATCGATTGGGAGAATAGTGCGTTCGCTAACGCAAAACGAAGGCTTGATAGAAGTGAGAACAGGATAATGAACAAATAAAATTGGTTGATATTTTCAGAAAGAAATGGTGGAGCAGATAGCGACGAAGACGAAGATGAAGATGACGTCGAGACAAAGAAAAGAAAATTCGCCGGACAGCTCGAAGAAGGTCATGAAGAATTGTTGCCAATCAAGCTGA</canonical>
            <polymorphic>AGATAAACTGGAAAAGTTGAAACGGATTGCATCATTGACAGAAAATGGGGAATTGTGAGAGCATTTCGGACCGAAAATGATGCAAAAAGTCGAGAAAAATAGCTTAGAACCTCTGTTTTATGATTTTACACAGAAGAATGTTGGAGAAAATTCTCGAAACTTTTATCACGGGCTATTGCATCAACTGAAAACTCAAAATACACTTCTCAAGGCACTCCGAGACTCCGCCCATTTTGAAGTACGGTCGGCGCCAGGTCTCGCGACGATTTCATTAGAAAAGTGTGCGCGCGTTGCGAAACCGCCCCTTTTTGCAGCCTGCGGCAGAGTTTTTAGCCGATTTATTTACTAGACTATTTTATTCTTTGTGCAAAAAGAAGTGTTTAATTACTGAAAAAAGGAAATTTCATGTTTTTCGTCTTCTAAAAGCTATAGAAAACAAGTTTCCTAATTGTATAAATTTCAGAAAACATGGGGTTCGCTTCCGCTTCTCGCGAAGAGAWGCTAAAAATGATGAAGACGAATAAAACGAGAAAAACGACGAAGAACTTGAATCGTTTGGCGAAAAAGAAGAAGTTGTCCAGAGAAATTCGCGATGGAATGTCAGATATTAAAGCCAGAAAATCTGCTGACTTGCGGCAAAGAGCTGTTAATGTAAACACTATTTTCAACAAAGACAGAAAAAAATGAATTTTACAGATTGAAGACGATTTCATCGCCGACAGAGAAGCTCGCTACGAAAATGACGACGAGGAAGACTTGCCGTTGGATATGATGGATGCTGATATCGATTGGGAGAATAGTGCGTTCGCTAACGCAAAACGAAGGCTTGATAGAAGTGAGAACAGGATAATGAACAAATAAAATTGGTTGATATTTTCAGAAAGAAATGGTGGAGCAGATAGCGACGAAGACGAAGATGAAGATGACGTCGAGACAAAGAAAAGAAAATTCGCCGGACAGCTCGAAGAAGGTCATGAAGAATTGTTGCCAATCAAGCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>324 233 142 102 84 75 36 4</canonical_bands>
                <polymorphic_bands>324 233 217 102 84 36 4</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>142 135 112 102 98 93 84 75 70 36 30 19 4</canonical_bands>
                <polymorphic_bands>187 142 135 102 98 93 84 70 36 30 19 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCCGATTTATTTACTAGACTATTTT</pcr_primer_p1>
		<pcr_primer_p2>TCTGGACAACTTCTTCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGCCGATTTATTTACTAGACTATTTTATTCTTTGTGCAAAAAGAAGTGTTTAATTACTGAAAAAAGGAAATTTCATGTTTTTCGTCTTCTAAAAGCTATAGAAAACAAGTTTCCTAATTGTATAAATTTCAGAAAACATGGGGTTCGCTTCCGCTTCTCGCGAAGAGAAGCTAAAAATGATGAAGACGAATAAAACGAGAAAAACGACGAAGAACTTGAATCGTTTGGCGAAAAAGAAGAAGTTGTCCAGA</canonical_amplicon>
		<polymorphic_amplicon>AGCCGATTTATTTACTAGACTATTTTATTCTTTGTGCAAAAAGAAGTGTTTAATTACTGAAAAAAGGAAATTTCATGTTTTTCGTCTTCTAAAAGCTATAGAAAACAAGTTTCCTAATTGTATAAATTTCAGAAAACATGGGGTTCGCTTCCGCTTCTCGCGAAGAGAWGCTAAAAATGATGAAGACGAATAAAACGAGAAAAACGACGAAGAACTTGAATCGTTTGGCGAAAAAGAAGAAGTTGTCCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29343</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>169498</contig_pos>
        <strand>+</strand>
        <context>TGCGCGTCAA[A/C]ATACCAGAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>NNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAA</left_flank>
        <right_flank>ATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTCAATGCGTGCGC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGGTTACTGTAACTGGAACAATTCGAGAGGCTTCCATTCGACCGCCCGCCGACCGCCTGCCGAATTACGCGTCAAAAAGGCCAGAGAGTGTTTGTGTACATTTTTTACGATGATTTTTTTGAAAAAACAATGCTGCGTACGCAAACACTCTCTGGCAAAAATTTCTTCGGCGGTTGGTCGGCGGTCGGTCGGCCGGCCGGCCAAAATTTCTTACATCACCACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTCAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGGCCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGATATCCTTTGGGCTTGGCGTTGTACTTAAACAAAATGCAGGTGTTGATGGAAATCTCGTGGAGGGCATCTCGAATATCCTTCTTATCCGATTCTTCTGGAATTTTCCAGATTTTTCTAAATGTTTGTCTTCTAAATACCTAACGAGTCATCCAAAGTGTACTGAATCGGCTTCCAGATGTCCCATTTTTGAACCATGTTCTCTTGAAAAAAGACTCCAGATCTTGGAGAGCGACCACCGGGAACTCCTGGAACATCTGCTCCACGTCCGGCTTCTCCAAGCTCATTGAGCAAGAAGTTGGCTTGGTGCTCCGTTAGCAGCACATCTCTATCGA</canonical>
            <polymorphic>AGGGTTACTGTAACTGGAACAATTCGAGAGGCTTCCATTCGACCGCCCGCCGACCGCCTGCCGAATTACGCGTCAAAAAGGCCAGAGAGTGTTTGTGTACATTTTTTACGATGATTTTTTTGAAAAAACAATGCTGCGTACGCAAACACTCTCTGGCAAAAATTTCTTCGGCGGTTGGTCGGCGGTCGGTCGGCCGGCCGGCCAAAATTTCTTACATCACCACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAMATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTCAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGGCCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGATATCCTTTGGGCTTGGCGTTGTACTTAAACAAAATGCAGGTGTTGATGGAAATCTCGTGGAGGGCATCTCGAATATCCTTCTTATCCGATTCTTCTGGAATTTTCCAGATTTTTCTAAATGTTTGTCTTCTAAATACCTAACGAGTCATCCAAAGTGTACTGAATCGGCTTCCAGATGTCCCATTTTTGAACCATGTTCTCTTGAAAAAAGACTCCAGATCTTGGAGAGCGACCACCGGGAACTCCTGGAACATCTGCTCCACGTCCGGCTTCTCCAAGCTCATTGAGCAAGAAGTTGGCTTGGTGCTCCGTTAGCAGCACATCTCTATCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACACTGGAAGCTCAAGTAGAT</pcr_primer_p1>
		<pcr_primer_p2>TCATTTGAATTATATGAAAGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>448</pcr_amplicon_size>
		<canonical_amplicon>CACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTCAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGGCCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGA</canonical_amplicon>
		<polymorphic_amplicon>CACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAMATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTCAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGGCCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29344</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>169536</contig_pos>
        <strand>+</strand>
        <context>ATTGCGTCAT[A/T]MAATGCGTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCAT</left_flank>
        <right_flank>CAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAAT</right_flank>
        <qual_score>146</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGACCGCCCGCCGACCGCCTGCCGAATTACGCGTCAAAAAGGCCAGAGAGTGTTTGTGTACATTTTTTACGATGATTTTTTTGAAAAAACAATGCTGCGTACGCAAACACTCTCTGGCAAAAATTTCTTCGGCGGTTGGTCGGCGGTCGGTCGGCCGGCCGGCCAAAATTTCTTACATCACCACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTCAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGGCCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGATATCCTTTGGGCTTGGCGTTGTACTTAAACAAAATGCAGGTGTTGATGGAAATCTCGTGGAGGGCATCTCGAATATCCTTCTTATCCGATTCTTCTGGAATTTTCCAGATTTTTCTAAATGTTTGTCTTCTAAATACCTAACGAGTCATCCAAAGTGTACTGAATCGGCTTCCAGATGTCCCATTTTTGAACCATGTTCTCTTGAAAAAAGACTCCAGATCTTGGAGAGCGACCACCGGGAACTCCTGGAACATCTGCTCCACGTCCGGCTTCTCCAAGCTCATTGAGCAAGAAGTTGGCTTGGTGCTCCGTTAGCAGCACATCTCTATCGAATACTCCATTGTCGGCAGGAACGATCTGTACTTGCAAA</canonical>
            <polymorphic>TCGACCGCCCGCCGACCGCCTGCCGAATTACGCGTCAAAAAGGCCAGAGAGTGTTTGTGTACATTTTTTACGATGATTTTTTTGAAAAAACAATGCTGCGTACGCAAACACTCTCTGGCAAAAATTTCTTCGGCGGTTGGTCGGCGGTCGGTCGGCCGGCCGGCCAAAATTTCTTACATCACCACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATWCAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGGCCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGATATCCTTTGGGCTTGGCGTTGTACTTAAACAAAATGCAGGTGTTGATGGAAATCTCGTGGAGGGCATCTCGAATATCCTTCTTATCCGATTCTTCTGGAATTTTCCAGATTTTTCTAAATGTTTGTCTTCTAAATACCTAACGAGTCATCCAAAGTGTACTGAATCGGCTTCCAGATGTCCCATTTTTGAACCATGTTCTCTTGAAAAAAGACTCCAGATCTTGGAGAGCGACCACCGGGAACTCCTGGAACATCTGCTCCACGTCCGGCTTCTCCAAGCTCATTGAGCAAGAAGTTGGCTTGGTGCTCCGTTAGCAGCACATCTCTATCGAATACTCCATTGTCGGCAGGAACGATCTGTACTTGCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACACTGGAAGCTCAAGTAGAT</pcr_primer_p1>
		<pcr_primer_p2>TCATTTGAATTATATGAAAGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>448</pcr_amplicon_size>
		<canonical_amplicon>CACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTCAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGGCCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGA</canonical_amplicon>
		<polymorphic_amplicon>CACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATWCAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGGCCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29345</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>169537</contig_pos>
        <strand>+</strand>
        <context>TTGCGTCATW[A/C]AATGCGTGCK</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATT</left_flank>
        <right_flank>AATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACCGCCCGCCGACCGCCTGCCGAATTACGCGTCAAAAAGGCCAGAGAGTGTTTGTGTACATTTTTTACGATGATTTTTTTGAAAAAACAATGCTGCGTACGCAAACACTCTCTGGCAAAAATTTCTTCGGCGGTTGGTCGGCGGTCGGTCGGCCGGCCGGCCAAAATTTCTTACATCACCACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTCAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGGCCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGATATCCTTTGGGCTTGGCGTTGTACTTAAACAAAATGCAGGTGTTGATGGAAATCTCGTGGAGGGCATCTCGAATATCCTTCTTATCCGATTCTTCTGGAATTTTCCAGATTTTTCTAAATGTTTGTCTTCTAAATACCTAACGAGTCATCCAAAGTGTACTGAATCGGCTTCCAGATGTCCCATTTTTGAACCATGTTCTCTTGAAAAAAGACTCCAGATCTTGGAGAGCGACCACCGGGAACTCCTGGAACATCTGCTCCACGTCCGGCTTCTCCAAGCTCATTGAGCAAGAAGTTGGCTTGGTGCTCCGTTAGCAGCACATCTCTATCGAATACTCCATTGTCGGCAGGAACGATCTGTACTTGCAAAA</canonical>
            <polymorphic>CGACCGCCCGCCGACCGCCTGCCGAATTACGCGTCAAAAAGGCCAGAGAGTGTTTGTGTACATTTTTTACGATGATTTTTTTGAAAAAACAATGCTGCGTACGCAAACACTCTCTGGCAAAAATTTCTTCGGCGGTTGGTCGGCGGTCGGTCGGCCGGCCGGCCAAAATTTCTTACATCACCACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTMAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGGCCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGATATCCTTTGGGCTTGGCGTTGTACTTAAACAAAATGCAGGTGTTGATGGAAATCTCGTGGAGGGCATCTCGAATATCCTTCTTATCCGATTCTTCTGGAATTTTCCAGATTTTTCTAAATGTTTGTCTTCTAAATACCTAACGAGTCATCCAAAGTGTACTGAATCGGCTTCCAGATGTCCCATTTTTGAACCATGTTCTCTTGAAAAAAGACTCCAGATCTTGGAGAGCGACCACCGGGAACTCCTGGAACATCTGCTCCACGTCCGGCTTCTCCAAGCTCATTGAGCAAGAAGTTGGCTTGGTGCTCCGTTAGCAGCACATCTCTATCGAATACTCCATTGTCGGCAGGAACGATCTGTACTTGCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACACTGGAAGCTCAAGTAGAT</pcr_primer_p1>
		<pcr_primer_p2>TCATTTGAATTATATGAAAGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>448</pcr_amplicon_size>
		<canonical_amplicon>CACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTCAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGGCCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGA</canonical_amplicon>
		<polymorphic_amplicon>CACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTMAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGGCCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29346</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>169547</contig_pos>
        <strand>+</strand>
        <context>MAATGCGTGC[G/T]CAAATACTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTCAATGCGTGC</left_flank>
        <right_flank>CAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGG</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGACCGCCTGCCGAATTACGCGTCAAAAAGGCCAGAGAGTGTTTGTGTACATTTTTTACGATGATTTTTTTGAAAAAACAATGCTGCGTACGCAAACACTCTCTGGCAAAAATTTCTTCGGCGGTTGGTCGGCGGTCGGTCGGCCGGCCGGCCAAAATTTCTTACATCACCACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTCAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGGCCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGATATCCTTTGGGCTTGGCGTTGTACTTAAACAAAATGCAGGTGTTGATGGAAATCTCGTGGAGGGCATCTCGAATATCCTTCTTATCCGATTCTTCTGGAATTTTCCAGATTTTTCTAAATGTTTGTCTTCTAAATACCTAACGAGTCATCCAAAGTGTACTGAATCGGCTTCCAGATGTCCCATTTTTGAACCATGTTCTCTTGAAAAAAGACTCCAGATCTTGGAGAGCGACCACCGGGAACTCCTGGAACATCTGCTCCACGTCCGGCTTCTCCAAGCTCATTGAGCAAGAAGTTGGCTTGGTGCTCCGTTAGCAGCACATCTCTATCGAATACTCCATTGTCGGCAGGAACGATCTGTACTTGCAAAAGTTAGGGCAG</canonical>
            <polymorphic>CCGACCGCCTGCCGAATTACGCGTCAAAAAGGCCAGAGAGTGTTTGTGTACATTTTTTACGATGATTTTTTTGAAAAAACAATGCTGCGTACGCAAACACTCTCTGGCAAAAATTTCTTCGGCGGTTGGTCGGCGGTCGGTCGGCCGGCCGGCCAAAATTTCTTACATCACCACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTCAATGCGTGCKCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGGCCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGATATCCTTTGGGCTTGGCGTTGTACTTAAACAAAATGCAGGTGTTGATGGAAATCTCGTGGAGGGCATCTCGAATATCCTTCTTATCCGATTCTTCTGGAATTTTCCAGATTTTTCTAAATGTTTGTCTTCTAAATACCTAACGAGTCATCCAAAGTGTACTGAATCGGCTTCCAGATGTCCCATTTTTGAACCATGTTCTCTTGAAAAAAGACTCCAGATCTTGGAGAGCGACCACCGGGAACTCCTGGAACATCTGCTCCACGTCCGGCTTCTCCAAGCTCATTGAGCAAGAAGTTGGCTTGGTGCTCCGTTAGCAGCACATCTCTATCGAATACTCCATTGTCGGCAGGAACGATCTGTACTTGCAAAAGTTAGGGCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCGCA</site>
                <isoschizomers>
                    <enzyme>Acc16I</enzyme>
                    <enzyme>AviII</enzyme>
                    <enzyme>FspI</enzyme>
                    <enzyme>MstI</enzyme>
                    <enzyme>NsbI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 444 56</canonical_bands>
                <polymorphic_bands>556 444</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACACTGGAAGCTCAAGTAGAT</pcr_primer_p1>
		<pcr_primer_p2>TCATTTGAATTATATGAAAGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>448</pcr_amplicon_size>
		<canonical_amplicon>CACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTCAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGGCCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGA</canonical_amplicon>
		<polymorphic_amplicon>CACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTCAATGCGTGCKCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGGCCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29347</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>169580</contig_pos>
        <strand>+</strand>
        <context>CGATCAAATG[C/G]AAAAATTCGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGTCATTCAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATG</left_flank>
        <right_flank>AAAAATTCGGTCGACGGTCGGTCGGCCGCCTATAAAGCCTTTGTCCTTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAGAGTGTTTGTGTACATTTTTTACGATGATTTTTTTGAAAAAACAATGCTGCGTACGCAAACACTCTCTGGCAAAAATTTCTTCGGCGGTTGGTCGGCGGTCGGTCGGCCGGCCGGCCAAAATTTCTTACATCACCACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTCAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGGCCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGATATCCTTTGGGCTTGGCGTTGTACTTAAACAAAATGCAGGTGTTGATGGAAATCTCGTGGAGGGCATCTCGAATATCCTTCTTATCCGATTCTTCTGGAATTTTCCAGATTTTTCTAAATGTTTGTCTTCTAAATACCTAACGAGTCATCCAAAGTGTACTGAATCGGCTTCCAGATGTCCCATTTTTGAACCATGTTCTCTTGAAAAAAGACTCCAGATCTTGGAGAGCGACCACCGGGAACTCCTGGAACATCTGCTCCACGTCCGGCTTCTCCAAGCTCATTGAGCAAGAAGTTGGCTTGGTGCTCCGTTAGCAGCACATCTCTATCGAATACTCCATTGTCGGCAGGAACGATCTGTACTTGCAAAAGTTAGGGCAGCATGTTAAAATGGCCTAGAAAACACACCAGGGG</canonical>
            <polymorphic>CAGAGAGTGTTTGTGTACATTTTTTACGATGATTTTTTTGAAAAAACAATGCTGCGTACGCAAACACTCTCTGGCAAAAATTTCTTCGGCGGTTGGTCGGCGGTCGGTCGGCCGGCCGGCCAAAATTTCTTACATCACCACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTCAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGSAAAAATTCGGTCGACGGTCGGTCGGCCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGATATCCTTTGGGCTTGGCGTTGTACTTAAACAAAATGCAGGTGTTGATGGAAATCTCGTGGAGGGCATCTCGAATATCCTTCTTATCCGATTCTTCTGGAATTTTCCAGATTTTTCTAAATGTTTGTCTTCTAAATACCTAACGAGTCATCCAAAGTGTACTGAATCGGCTTCCAGATGTCCCATTTTTGAACCATGTTCTCTTGAAAAAAGACTCCAGATCTTGGAGAGCGACCACCGGGAACTCCTGGAACATCTGCTCCACGTCCGGCTTCTCCAAGCTCATTGAGCAAGAAGTTGGCTTGGTGCTCCGTTAGCAGCACATCTCTATCGAATACTCCATTGTCGGCAGGAACGATCTGTACTTGCAAAAGTTAGGGCAGCATGTTAAAATGGCCTAGAAAACACACCAGGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>403 330 123 96 48</canonical_bands>
                <polymorphic_bands>403 330 219 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACACTGGAAGCTCAAGTAGAT</pcr_primer_p1>
		<pcr_primer_p2>TCATTTGAATTATATGAAAGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>448</pcr_amplicon_size>
		<canonical_amplicon>CACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTCAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGGCCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGA</canonical_amplicon>
		<polymorphic_amplicon>CACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTCAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGSAAAAATTCGGTCGACGGTCGGTCGGCCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29348</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>169605</contig_pos>
        <strand></strand>
        <context>CGGTCGGTCG[G/A]RCGCCTATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCG</left_flank>
        <right_flank>CCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATAT</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGATGATTTTTTTGAAAAAACAATGCTGCGTACGCAAACACTCTCTGGCAAAAATTTCTTCGGCGGTTGGTCGGCGGTCGGTCGGCCGGCCGGCCAAAATTTCTTACATCACCACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTCAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGGCCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGATATCCTTTGGGCTTGGCGTTGTACTTAAACAAAATGCAGGTGTTGATGGAAATCTCGTGGAGGGCATCTCGAATATCCTTCTTATCCGATTCTTCTGGAATTTTCCAGATTTTTCTAAATGTTTGTCTTCTAAATACCTAACGAGTCATCCAAAGTGTACTGAATCGGCTTCCAGATGTCCCATTTTTGAACCATGTTCTCTTGAAAAAAGACTCCAGATCTTGGAGAGCGACCACCGGGAACTCCTGGAACATCTGCTCCACGTCCGGCTTCTCCAAGCTCATTGAGCAAGAAGTTGGCTTGGTGCTCCGTTAGCAGCACATCTCTATCGAATACTCCATTGTCGGCAGGAACGATCTGTACTTGCAAAAGTTAGGGCAGCATGTTAAAATGGCCTAGAAAACACACCAGGGGAATATCAGGTCATTTCTAGATCATT</canonical>
            <polymorphic>ACGATGATTTTTTTGAAAAAACAATGCTGCGTACGCAAACACTCTCTGGCAAAAATTTCTTCGGCGGTTGGTCGGCGGTCGGTCGGCCGGCCGGCCAAAATTTCTTACATCACCACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTCAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGRCCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGATATCCTTTGGGCTTGGCGTTGTACTTAAACAAAATGCAGGTGTTGATGGAAATCTCGTGGAGGGCATCTCGAATATCCTTCTTATCCGATTCTTCTGGAATTTTCCAGATTTTTCTAAATGTTTGTCTTCTAAATACCTAACGAGTCATCCAAAGTGTACTGAATCGGCTTCCAGATGTCCCATTTTTGAACCATGTTCTCTTGAAAAAAGACTCCAGATCTTGGAGAGCGACCACCGGGAACTCCTGGAACATCTGCTCCACGTCCGGCTTCTCCAAGCTCATTGAGCAAGAAGTTGGCTTGGTGCTCCGTTAGCAGCACATCTCTATCGAATACTCCATTGTCGGCAGGAACGATCTGTACTTGCAAAAGTTAGGGCAGCATGTTAAAATGGCCTAGAAAACACACCAGGGGAATATCAGGTCATTTCTAGATCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>499 147 126 118 79 7 4 4 4 4 4 4</canonical_bands>
                <polymorphic_bands>507 147 126 118 79 7 4 4 4 4</polymorphic_bands>
            </assay>
            <assay>
                <site>CGGCCG</site>
                <isoschizomers>
                    <enzyme>BseX3I</enzyme>
                    <enzyme>BstZI</enzyme>
                    <enzyme>EagI</enzyme>
                    <enzyme>EclXI</enzyme>
                    <enzyme>Eco52I</enzyme>
                    <enzyme>XmaIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 280 130 84 4</canonical_bands>
                <polymorphic_bands>782 130 84 4</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>455 280 126 86 45 4 4</canonical_bands>
                <polymorphic_bands>735 126 86 45 4 4</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>376 325 149 63 58 29</canonical_bands>
                <polymorphic_bands>701 149 63 58 29</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 280 126 84 8</canonical_bands>
                <polymorphic_bands>782 126 84 8</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>280 157 101 95 86 60 45 35 34 30 20 19 12 10 8 4 4</canonical_bands>
                <polymorphic_bands>292 157 101 95 86 60 45 35 34 30 20 19 10 8 4 4</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACACTGGAAGCTCAAGTAGAT</pcr_primer_p1>
		<pcr_primer_p2>TCATTTGAATTATATGAAAGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>448</pcr_amplicon_size>
		<canonical_amplicon>CACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTCAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGGCCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGA</canonical_amplicon>
		<polymorphic_amplicon>CACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTCAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGRCCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29349</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>169606</contig_pos>
        <strand>+</strand>
        <context>GGTCGGTCGR[A/G]CGCCTATAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGG</left_flank>
        <right_flank>CGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATGATTTTTTTGAAAAAACAATGCTGCGTACGCAAACACTCTCTGGCAAAAATTTCTTCGGCGGTTGGTCGGCGGTCGGTCGGCCGGCCGGCCAAAATTTCTTACATCACCACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTCAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGGCCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGATATCCTTTGGGCTTGGCGTTGTACTTAAACAAAATGCAGGTGTTGATGGAAATCTCGTGGAGGGCATCTCGAATATCCTTCTTATCCGATTCTTCTGGAATTTTCCAGATTTTTCTAAATGTTTGTCTTCTAAATACCTAACGAGTCATCCAAAGTGTACTGAATCGGCTTCCAGATGTCCCATTTTTGAACCATGTTCTCTTGAAAAAAGACTCCAGATCTTGGAGAGCGACCACCGGGAACTCCTGGAACATCTGCTCCACGTCCGGCTTCTCCAAGCTCATTGAGCAAGAAGTTGGCTTGGTGCTCCGTTAGCAGCACATCTCTATCGAATACTCCATTGTCGGCAGGAACGATCTGTACTTGCAAAAGTTAGGGCAGCATGTTAAAATGGCCTAGAAAACACACCAGGGGAATATCAGGTCATTTCTAGATCATTC</canonical>
            <polymorphic>CGATGATTTTTTTGAAAAAACAATGCTGCGTACGCAAACACTCTCTGGCAAAAATTTCTTCGGCGGTTGGTCGGCGGTCGGTCGGCCGGCCGGCCAAAATTTCTTACATCACCACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTCAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGGRCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGATATCCTTTGGGCTTGGCGTTGTACTTAAACAAAATGCAGGTGTTGATGGAAATCTCGTGGAGGGCATCTCGAATATCCTTCTTATCCGATTCTTCTGGAATTTTCCAGATTTTTCTAAATGTTTGTCTTCTAAATACCTAACGAGTCATCCAAAGTGTACTGAATCGGCTTCCAGATGTCCCATTTTTGAACCATGTTCTCTTGAAAAAAGACTCCAGATCTTGGAGAGCGACCACCGGGAACTCCTGGAACATCTGCTCCACGTCCGGCTTCTCCAAGCTCATTGAGCAAGAAGTTGGCTTGGTGCTCCGTTAGCAGCACATCTCTATCGAATACTCCATTGTCGGCAGGAACGATCTGTACTTGCAAAAGTTAGGGCAGCATGTTAAAATGGCCTAGAAAACACACCAGGGGAATATCAGGTCATTTCTAGATCATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>500 302 99 62 26 11</canonical_bands>
                <polymorphic_bands>802 99 62 26 11</polymorphic_bands>
            </assay>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>500 147 126 118 78 7 4 4 4 4 4 4</canonical_bands>
                <polymorphic_bands>508 147 126 118 78 7 4 4 4 4</polymorphic_bands>
            </assay>
            <assay>
                <site>CGGCCG</site>
                <isoschizomers>
                    <enzyme>BseX3I</enzyme>
                    <enzyme>BstZI</enzyme>
                    <enzyme>EagI</enzyme>
                    <enzyme>EclXI</enzyme>
                    <enzyme>Eco52I</enzyme>
                    <enzyme>XmaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 280 130 83 4</canonical_bands>
                <polymorphic_bands>783 130 83 4</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>455 280 126 85 46 4 4</canonical_bands>
                <polymorphic_bands>735 126 85 46 4 4</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>376 325 149 63 59 28</canonical_bands>
                <polymorphic_bands>701 149 63 59 28</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 280 126 83 8</canonical_bands>
                <polymorphic_bands>783 126 83 8</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>280 157 101 95 85 60 46 35 34 30 20 19 12 10 8 4 4</canonical_bands>
                <polymorphic_bands>292 157 101 95 85 60 46 35 34 30 20 19 10 8 4 4</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACACTGGAAGCTCAAGTAGAT</pcr_primer_p1>
		<pcr_primer_p2>TCATTTGAATTATATGAAAGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>448</pcr_amplicon_size>
		<canonical_amplicon>CACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTCAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGGCCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGA</canonical_amplicon>
		<polymorphic_amplicon>CACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTCAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGGRCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29350</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>169636</contig_pos>
        <strand>+</strand>
        <context>CTTACAAAGT[A/T]GTACTATCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCGGTCGACGGTCGGTCGGCCGCCTATAAAGCCTTTGTCCTTACAAAGT</left_flank>
        <right_flank>GTACTATCCACTTTCATATAATTCAAATGATATCCTTTGGGCTTGGCGTT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACGCAAACACTCTCTGGCAAAAATTTCTTCGGCGGTTGGTCGGCGGTCGGTCGGCCGGCCGGCCAAAATTTCTTACATCACCACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTCAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGGCCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGATATCCTTTGGGCTTGGCGTTGTACTTAAACAAAATGCAGGTGTTGATGGAAATCTCGTGGAGGGCATCTCGAATATCCTTCTTATCCGATTCTTCTGGAATTTTCCAGATTTTTCTAAATGTTTGTCTTCTAAATACCTAACGAGTCATCCAAAGTGTACTGAATCGGCTTCCAGATGTCCCATTTTTGAACCATGTTCTCTTGAAAAAAGACTCCAGATCTTGGAGAGCGACCACCGGGAACTCCTGGAACATCTGCTCCACGTCCGGCTTCTCCAAGCTCATTGAGCAAGAAGTTGGCTTGGTGCTCCGTTAGCAGCACATCTCTATCGAATACTCCATTGTCGGCAGGAACGATCTGTACTTGCAAAAGTTAGGGCAGCATGTTAAAATGGCCTAGAAAACACACCAGGGGAATATCAGGTCATTTCTAGATCATTCACCATTGTGGCCTAGAAAATTCGACTTGAA</canonical>
            <polymorphic>TACGCAAACACTCTCTGGCAAAAATTTCTTCGGCGGTTGGTCGGCGGTCGGTCGGCCGGCCGGCCAAAATTTCTTACATCACCACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTCAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGGCCGCCTATAAAGCCTTTGTCCTTACAAAGTWGTACTATCCACTTTCATATAATTCAAATGATATCCTTTGGGCTTGGCGTTGTACTTAAACAAAATGCAGGTGTTGATGGAAATCTCGTGGAGGGCATCTCGAATATCCTTCTTATCCGATTCTTCTGGAATTTTCCAGATTTTTCTAAATGTTTGTCTTCTAAATACCTAACGAGTCATCCAAAGTGTACTGAATCGGCTTCCAGATGTCCCATTTTTGAACCATGTTCTCTTGAAAAAAGACTCCAGATCTTGGAGAGCGACCACCGGGAACTCCTGGAACATCTGCTCCACGTCCGGCTTCTCCAAGCTCATTGAGCAAGAAGTTGGCTTGGTGCTCCGTTAGCAGCACATCTCTATCGAATACTCCATTGTCGGCAGGAACGATCTGTACTTGCAAAAGTTAGGGCAGCATGTTAAAATGGCCTAGAAAACACACCAGGGGAATATCAGGTCATTTCTAGATCATTCACCATTGTGGCCTAGAAAATTCGACTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 203 136 111 50</canonical_bands>
                <polymorphic_bands>550 203 136 111</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACACTGGAAGCTCAAGTAGAT</pcr_primer_p1>
		<pcr_primer_p2>ACCTGCATTTTGTTTAAGTACA</pcr_primer_p2>
		<pcr_amplicon_size>489</pcr_amplicon_size>
		<canonical_amplicon>CACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTCAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGGCCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGATATCCTTTGGGCTTGGCGTTGTACTTAAACAAAATGCAGGT</canonical_amplicon>
		<polymorphic_amplicon>CACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTCAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGGCCGCCTATAAAGCCTTTGTCCTTACAAAGTWGTACTATCCACTTTCATATAATTCAAATGATATCCTTTGGGCTTGGCGTTGTACTTAAACAAAATGCAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29351</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>169679</contig_pos>
        <strand>+</strand>
        <context>TCCTTTGGGC[G/T]TGGCGTTGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACAAAGTTGTACTATCCACTTTCATATAATTCAAATGATATCCTTTGGGC</left_flank>
        <right_flank>TGGCGTTGTACTTAAACAAAATGCAGGTGTTGATGGAAATCTCGTGGAGG</right_flank>
        <qual_score>149</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGGTCGGTCGGCCGGCCGGCCAAAATTTCTTACATCACCACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTCAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGGCCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGATATCCTTTGGGCTTGGCGTTGTACTTAAACAAAATGCAGGTGTTGATGGAAATCTCGTGGAGGGCATCTCGAATATCCTTCTTATCCGATTCTTCTGGAATTTTCCAGATTTTTCTAAATGTTTGTCTTCTAAATACCTAACGAGTCATCCAAAGTGTACTGAATCGGCTTCCAGATGTCCCATTTTTGAACCATGTTCTCTTGAAAAAAGACTCCAGATCTTGGAGAGCGACCACCGGGAACTCCTGGAACATCTGCTCCACGTCCGGCTTCTCCAAGCTCATTGAGCAAGAAGTTGGCTTGGTGCTCCGTTAGCAGCACATCTCTATCGAATACTCCATTGTCGGCAGGAACGATCTGTACTTGCAAAAGTTAGGGCAGCATGTTAAAATGGCCTAGAAAACACACCAGGGGAATATCAGGTCATTTCTAGATCATTCACCATTGTGGCCTAGAAAATTCGACTTGAAAAAGCTCAGCCGCCATGGTAAATGGCCTAGAAAACACACCAGT</canonical>
            <polymorphic>GCGGTCGGTCGGCCGGCCGGCCAAAATTTCTTACATCACCACACTGGAAGCTCAAGTAGATCGGATTGGCTGGATCGGTTCGTCCCACGTAGGATAATCCGCAGCTGGAATTTTTTTCCATTTGGGCGGGAAATTCAGCCGACCGGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACCGAATTCATGCATTTGCGCGTCAAAATACCAGAGGGTATTTGCGTACGCAACATTGCGTCATTCAATGCGTGCGCAAATACTCTGGGGCATGTCGACGATCAAATGCAAAAATTCGGTCGACGGTCGGTCGGCCGCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGATATCCTTTGGGCKTGGCGTTGTACTTAAACAAAATGCAGGTGTTGATGGAAATCTCGTGGAGGGCATCTCGAATATCCTTCTTATCCGATTCTTCTGGAATTTTCCAGATTTTTCTAAATGTTTGTCTTCTAAATACCTAACGAGTCATCCAAAGTGTACTGAATCGGCTTCCAGATGTCCCATTTTTGAACCATGTTCTCTTGAAAAAAGACTCCAGATCTTGGAGAGCGACCACCGGGAACTCCTGGAACATCTGCTCCACGTCCGGCTTCTCCAAGCTCATTGAGCAAGAAGTTGGCTTGGTGCTCCGTTAGCAGCACATCTCTATCGAATACTCCATTGTCGGCAGGAACGATCTGTACTTGCAAAAGTTAGGGCAGCATGTTAAAATGGCCTAGAAAACACACCAGGGGAATATCAGGTCATTTCTAGATCATTCACCATTGTGGCCTAGAAAATTCGACTTGAAAAAGCTCAGCCGCCATGGTAAATGGCCTAGAAAACACACCAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>280 157 101 95 60 56 35 34 30 24 20 19 18 16 12 12 10 8 5 4 4</canonical_bands>
                <polymorphic_bands>280 217 101 95 56 35 34 30 24 20 19 18 16 12 12 10 8 5 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCTATAAAGCCTTTGTCCT</pcr_primer_p1>
		<pcr_primer_p2>GTTCAAAAATGGGACATCTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGATATCCTTTGGGCTTGGCGTTGTACTTAAACAAAATGCAGGTGTTGATGGAAATCTCGTGGAGGGCATCTCGAATATCCTTCTTATCCGATTCTTCTGGAATTTTCCAGATTTTTCTAAATGTTTGTCTTCTAAATACCTAACGAGTCATCCAAAGTGTACTGAATCGGCTTCCAGATGTCCCATTTTTGAAC</canonical_amplicon>
		<polymorphic_amplicon>GCCTATAAAGCCTTTGTCCTTACAAAGTTGTACTATCCACTTTCATATAATTCAAATGATATCCTTTGGGCKTGGCGTTGTACTTAAACAAAATGCAGGTGTTGATGGAAATCTCGTGGAGGGCATCTCGAATATCCTTCTTATCCGATTCTTCTGGAATTTTCCAGATTTTTCTAAATGTTTGTCTTCTAAATACCTAACGAGTCATCCAAAGTGTACTGAATCGGCTTCCAGATGTCCCATTTTTGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29352</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>183288</contig_pos>
        <strand>+</strand>
        <context>CKTCGTCGTC[A/G]GATGAGTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTC</left_flank>
        <right_flank>GATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAG</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAACAATATGTCCAGATCACTGAGAAAAAGTTGCAAGAAGCATTTATTGGAGAAAATTTATGGTAGATTTTATGAATATCGATTTGTGGACCCAGATGCCCCAGTTGAAACTACCAAACGATCTTTGCTTTTTGGAATCGATCGTATTTTGTGTAGTGAAAATAGAACACTGGTAATTTATAACTTTAAGATTAAAAAAATGAAGAAAAACGATTACAGAAATCCTCCAACCAAATTCAAATGCTCCCTTTTCTTCACGGTCTTCTAGGTGACCCATCTAATAAGGACATCATCTGCTGGACCAACAAAACCAATCAGGAGTTTCGAATCAGGAATACCAAAAAAATCGGCAAACTTTGGGGACTCACAAAGCCAGCAGGGGCAGTTATGGGTTATGAAAGTGTGTACCACTCGCTGAGAAGGCACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTC</canonical>
            <polymorphic>TATAACAATATGTCCAGATCACTGAGAAAAAGTTGCAAGAAGCATTTATTGGAGAAAATTTATGGTAGATTTTATGAATATCGATTTGTGGACCCAGATGCCCCAGTTGAAACTACCAAACGATCTTTGCTTTTTGGAATCGATCGTATTTTGTGTAGTGAAAATAGAACACTGGTAATTTATAACTTTAAGATTAAAAAAATGAAGAAAAACGATTACAGAAATCCTCCAACCAAATTCAAATGCTCCCTTTTCTTCACGGTCTTCTAGGTGACCCATCTAATAAGGACATCATCTGCTGGACCAACAAAACCAATCAGGAGTTTCGAATCAGGAATACCAAAAAAATCGGCAAACTTTGGGGACTCACAAAGCCAGCAGGGGCAGTTATGGGTTATGAAAGTGTGTACCACTCGCTGAGAAGGCACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTCRGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGTTTCGAATCAGGAATAC</pcr_primer_p1>
		<pcr_primer_p2>AATCGATCTTCCAAAATCACTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAGTTTCGAATCAGGAATACCAAAAAAATCGGCAAACTTTGGGGACTCACAAAGCCAGCAGGGGCAGTTATGGGTTATGAAAGTGTGTACCACTCGCTGAGAAGGCACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATT</canonical_amplicon>
		<polymorphic_amplicon>GGAGTTTCGAATCAGGAATACCAAAAAAATCGGCAAACTTTGGGGACTCACAAAGCCAGCAGGGGCAGTTATGGGTTATGAAAGTGTGTACCACTCGCTGAGAAGGCACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTCRGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29353</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>183465</contig_pos>
        <strand>+</strand>
        <context>GCGAAATTCK[G/T]ATTKKACGAC</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCT</left_flank>
        <right_flank>ATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTATAACTTTAAGATTAAAAAAATGAAGAAAAACGATTACAGAAATCCTCCAACCAAATTCAAATGCTCCCTTTTCTTCACGGTCTTCTAGGTGACCCATCTAATAAGGACATCATCTGCTGGACCAACAAAACCAATCAGGAGTTTCGAATCAGGAATACCAAAAAAATCGGCAAACTTTGGGGACTCACAAAGCCAGCAGGGGCAGTTATGGGTTATGAAAGTGTGTACCACTCGCTGAGAAGGCACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTA</canonical>
            <polymorphic>ATTTATAACTTTAAGATTAAAAAAATGAAGAAAAACGATTACAGAAATCCTCCAACCAAATTCAAATGCTCCCTTTTCTTCACGGTCTTCTAGGTGACCCATCTAATAAGGACATCATCTGCTGGACCAACAAAACCAATCAGGAGTTTCGAATCAGGAATACCAAAAAAATCGGCAAACTTTGGGGACTCACAAAGCCAGCAGGGGCAGTTATGGGTTATGAAAGTGTGTACCACTCGCTGAGAAGGCACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTKATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAAGATCGATTTGAATTTT</pcr_primer_p1>
		<pcr_primer_p2>CAGATTTCGTTCAAGTGATTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTG</canonical_amplicon>
		<polymorphic_amplicon>TGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTKATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29354</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>183470</contig_pos>
        <strand>+</strand>
        <context>ATTCKKATTK[G/T]ACGACTTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTT</left_flank>
        <right_flank>ACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACTTTAAGATTAAAAAAATGAAGAAAAACGATTACAGAAATCCTCCAACCAAATTCAAATGCTCCCTTTTCTTCACGGTCTTCTAGGTGACCCATCTAATAAGGACATCATCTGCTGGACCAACAAAACCAATCAGGAGTTTCGAATCAGGAATACCAAAAAAATCGGCAAACTTTGGGGACTCACAAAGCCAGCAGGGGCAGTTATGGGTTATGAAAGTGTGTACCACTCGCTGAGAAGGCACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGGA</canonical>
            <polymorphic>TAACTTTAAGATTAAAAAAATGAAGAAAAACGATTACAGAAATCCTCCAACCAAATTCAAATGCTCCCTTTTCTTCACGGTCTTCTAGGTGACCCATCTAATAAGGACATCATCTGCTGGACCAACAAAACCAATCAGGAGTTTCGAATCAGGAATACCAAAAAAATCGGCAAACTTTGGGGACTCACAAAGCCAGCAGGGGCAGTTATGGGTTATGAAAGTGTGTACCACTCGCTGAGAAGGCACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTKACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAAGATCGATTTGAATTTT</pcr_primer_p1>
		<pcr_primer_p2>CAGATTTCGTTCAAGTGATTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTG</canonical_amplicon>
		<polymorphic_amplicon>TGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTKACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29355</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>183529</contig_pos>
        <strand>+</strand>
        <context>TTTGAACTYT[A/T]AAAAAAAAGR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTT</left_flank>
        <right_flank>AAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGCTCCCTTTTCTTCACGGTCTTCTAGGTGACCCATCTAATAAGGACATCATCTGCTGGACCAACAAAACCAATCAGGAGTTTCGAATCAGGAATACCAAAAAAATCGGCAAACTTTGGGGACTCACAAAGCCAGCAGGGGCAGTTATGGGTTATGAAAGTGTGTACCACTCGCTGAGAAGGCACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGGAGTTGAGATAATTGCGCTCAAAGGGCACGTATGGAGTGGGCTTGTTTTAGAGCAAATACC</canonical>
            <polymorphic>AATGCTCCCTTTTCTTCACGGTCTTCTAGGTGACCCATCTAATAAGGACATCATCTGCTGGACCAACAAAACCAATCAGGAGTTTCGAATCAGGAATACCAAAAAAATCGGCAAACTTTGGGGACTCACAAAGCCAGCAGGGGCAGTTATGGGTTATGAAAGTGTGTACCACTCGCTGAGAAGGCACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTWAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGGAGTTGAGATAATTGCGCTCAAAGGGCACGTATGGAGTGGGCTTGTTTTAGAGCAAATACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>498 204 135 128 35</canonical_bands>
                <polymorphic_bands>533 204 135 128</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGAAGATCGATTTGAATTTT</pcr_primer_p1>
		<pcr_primer_p2>CAGATTTCGTTCAAGTGATTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTG</canonical_amplicon>
		<polymorphic_amplicon>TGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTWAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29356</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>183639</contig_pos>
        <strand></strand>
        <context>aaagcccacc[C/T]tgtatgtgca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACC</left_flank>
        <right_flank>TGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAA</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAAACTTTGGGGACTCACAAAGCCAGCAGGGGCAGTTATGGGTTATGAAAGTGTGTACCACTCGCTGAGAAGGCACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGGAGTTGAGATAATTGCGCTCAAAGGGCACGTATGGAGTGGGCTTGTTTTAGAGCAAATACCGTAGTTTGTTTCCGGCTTACATGGAAGTTCATAAATTTTCTAGATTATATGTATCTAGAATACAATTGTATCTCTAGACAGAACAGACATCTTTTATAGTTCGTATAGTT</canonical>
            <polymorphic>GCAAACTTTGGGGACTCACAAAGCCAGCAGGGGCAGTTATGGGTTATGAAAGTGTGTACCACTCGCTGAGAAGGCACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCYTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGGAGTTGAGATAATTGCGCTCAAAGGGCACGTATGGAGTGGGCTTGTTTTAGAGCAAATACCGTAGTTTGTTTCCGGCTTACATGGAAGTTCATAAATTTTCTAGATTATATGTATCTAGAATACAATTGTATCTCTAGACAGAACAGACATCTTTTATAGTTCGTATAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTTGAACGAAATCTGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TAAAACAAGCCCACTCCATA</pcr_primer_p2>
		<pcr_amplicon_size>441</pcr_amplicon_size>
		<canonical_amplicon>CACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGGAGTTGAGATAATTGCGCTCAAAGGGCACGTATGGAGTGGGCTTGTTTTA</canonical_amplicon>
		<polymorphic_amplicon>CACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCYTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGGAGTTGAGATAATTGCGCTCAAAGGGCACGTATGGAGTGGGCTTGTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29357</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>183659</contig_pos>
        <strand></strand>
        <context>actttgagct[C/T]gattatctcg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCT</left_flank>
        <right_flank>GATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCCAGCAGGGGCAGTTATGGGTTATGAAAGTGTGTACCACTCGCTGAGAAGGCACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGGAGTTGAGATAATTGCGCTCAAAGGGCACGTATGGAGTGGGCTTGTTTTAGAGCAAATACCGTAGTTTGTTTCCGGCTTACATGGAAGTTCATAAATTTTCTAGATTATATGTATCTAGAATACAATTGTATCTCTAGACAGAACAGACATCTTTTATAGTTCGTATAGTTCAGGTCTTTCAAAAATCTGG</canonical>
            <polymorphic>AAGCCAGCAGGGGCAGTTATGGGTTATGAAAGTGTGTACCACTCGCTGAGAAGGCACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTYGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGGAGTTGAGATAATTGCGCTCAAAGGGCACGTATGGAGTGGGCTTGTTTTAGAGCAAATACCGTAGTTTGTTTCCGGCTTACATGGAAGTTCATAAATTTTCTAGATTATATGTATCTAGAATACAATTGTATCTCTAGACAGAACAGACATCTTTTATAGTTCGTATAGTTCAGGTCTTTCAAAAATCTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>490 301 129 71 9</canonical_bands>
                <polymorphic_bands>490 301 138 71</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>499 301 129 71</canonical_bands>
                <polymorphic_bands>628 301 71</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>490 163 138 129 71 9</canonical_bands>
                <polymorphic_bands>490 163 138 138 71</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>497 303 129 71</canonical_bands>
                <polymorphic_bands>626 303 71</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 260 91 88 46 15</canonical_bands>
                <polymorphic_bands>760 91 88 46 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACTTGAACGAAATCTGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TAAAACAAGCCCACTCCATA</pcr_primer_p2>
		<pcr_amplicon_size>441</pcr_amplicon_size>
		<canonical_amplicon>CACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGGAGTTGAGATAATTGCGCTCAAAGGGCACGTATGGAGTGGGCTTGTTTTA</canonical_amplicon>
		<polymorphic_amplicon>CACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTYGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGGAGTTGAGATAATTGCGCTCAAAGGGCACGTATGGAGTGGGCTTGTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29358</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>183713</contig_pos>
        <strand></strand>
        <context>gataaaatat[C/T]acatatatta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATAT</left_flank>
        <right_flank>ACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGGAGTTGAGATAATTGCGCTCAAAGGGCACGTATGGAGTGGGCTTGTTTTAGAGCAAATACCGTAGTTTGTTTCCGGCTTACATGGAAGTTCATAAATTTTCTAGATTATATGTATCTAGAATACAATTGTATCTCTAGACAGAACAGACATCTTTTATAGTTCGTATAGTTCAGGTCTTTCAAAAATCTGGAATCTAGATCAAAAGCCAAAGTTCGTAACAGCAAGGAATTTATTTAGAATTTTA</canonical>
            <polymorphic>CACTGTAAGAATGGAATGTTGGAAAAGATGGAATTTCGAAATTTAGAATATCGATTTTTGAATTCTTCGTCGTCAGATGAGTTCAAGAAGCCAATTCTTTTCAGTGTTGAACGCATTCTGTCTAGTGATTTTGGAAGATCGATTTGAATTTTCCGATAATTATTTTCCCAATTTGAAAATGATATCGATATGGCATATAATGCATCCTAGACTGTCTACTCTTCATGTCCCTTGTTTTTTAGCGAAATTCTCATTTTACGACTTCCAGTGCTTCTGGAAATCATTCTGTTTTTATCAACTTTGTTTTTGAACTTTAAAAAAAAAGGATTTTTTATGATAATAAATTTTTTAATGCCAATAGAATCACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATYACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGGAGTTGAGATAATTGCGCTCAAAGGGCACGTATGGAGTGGGCTTGTTTTAGAGCAAATACCGTAGTTTGTTTCCGGCTTACATGGAAGTTCATAAATTTTCTAGATTATATGTATCTAGAATACAATTGTATCTCTAGACAGAACAGACATCTTTTATAGTTCGTATAGTTCAGGTCTTTCAAAAATCTGGAATCTAGATCAAAAGCCAAAGTTCGTAACAGCAAGGAATTTATTTAGAATTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>206 202 143 104 96 65 57 51 29 21 11 11 2 2</canonical_bands>
                <polymorphic_bands>206 202 143 116 104 96 57 29 21 11 11 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACTTGAACGAAATCTGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TAAAACAAGCCCACTCCATA</pcr_primer_p2>
		<pcr_amplicon_size>441</pcr_amplicon_size>
		<canonical_amplicon>CACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATCACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGGAGTTGAGATAATTGCGCTCAAAGGGCACGTATGGAGTGGGCTTGTTTTA</canonical_amplicon>
		<polymorphic_amplicon>CACTTGAACGAAATCTGAAGTTTTTCAACTTATACTGTATTTTCTCTAAAAAAAGCCCACCCTGTATGTGCACTTTGAGCTCGATTATCTCGGTTTCAAAACGAGATATCAAAAATATGTTAACTGATAAAATATYACATATATTATAATAAACATTTTATCAGTTGACTGATTTTTGATATCTCTCACGGGAGCCTAGATATTTGAGCTCAAAGTGTACGTATAGGATTCTTTCAGAGAATTTATATTAAGCCTCAATAGGGTATCTTCAACTTTGAGCTCAATAATCTCAATTCCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTGGTAATAATACAATAAACATTTTATCAGTTGAGAAAAATTTGATTTCTCTTATAGGAGTTGAGATAATTGCGCTCAAAGGGCACGTATGGAGTGGGCTTGTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29359</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>197468</contig_pos>
        <strand>+</strand>
        <context>TCAGGARTAC[A/G]AAAAAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTATTTGCTCAACTAGAAAGTTATAAAGTTGAAAAGGTCAGGAATAC</left_flank>
        <right_flank>AAAAAAAAAAGAAAAAGAAGAAGAACCCAAAGTTTGCGGGAAAGTGGGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCAGGTTATTGTAACCTCAGCATTTCTAAACTTAGCCTCAGAACCTCGAAATTCTTTGAACTCGAAGGAATCTTTAGTCTCACCTCAAAACCTCAAAACCACGAAAACGTATACTCATTCAAAACGATTGACCCTATTTTTCATTCTCTCTTCTTCCCAGGAACCAGTTATTATTACACTTTTTCTAAAAACTCTTTGACGGAAAAAAAAGAGAAGCCCGCGGAGAAAAATTCTGACCAAACGTTTCAACAGAAAAAGAACCACGTGAGTGATGGGTGCCAGGTTATATAAAGGGACCTCAGGACGATGACTGGATGAAAGAATACGTCAACTGAAATCTCAAATTTCACACATTGGTTATTGATGTGTTCGCTTGGGGCTTCTAGGTTAGACCAAATTTCATCTAGGTGCCCAATGATTAGAAATTCAAAAAAAATTCTGGTGCTCAATTTATTTGCTCAACTAGAAAGTTATAAAGTTGAAAAGGTCAGGAATACAAAAAAAAAAAGAAAAAGAAGAAGAACCCAAAGTTTGCGGGAAAGTGGGCGTGGCCTATTTCCCTTCACTTGTATGGACGGGATACAAAGGATTACAATGGGGTTAAAATTGAGTAAGCTGAAAAAGGGAAGGAGTTGAAAATGGGCAGATAATCCAAAAAGACAGACAGAGAAAGAAAAAAAAAGAAAACAGAGCAAAATGATTGATTGTACTTGAATAGAACGAGAAAAAGAAGAAGCTACAGAAAGTAAGAAAAAAAGAAGTATGACAAAAAATGAGAGTTCGTCAAAGTTAATCTTCTTCTTCGAGATTCTTCTTTGCTTTTCGACTACGACGTTTTCGTGTTTTCGGCGCTGTGTTGCAGAGTTCCAGGGGTCTTTTGACTTTGTTCAGACGGAAGTACAAGTTACAGGCAATGAAAAAATATGTTTTCCTGGACCATCACTATATGTATTCTCTTATAGGATCCCAATAGAAGTCATTTCAATTTGAGGTCAATT</canonical>
            <polymorphic>CTTCAGGTTATTGTAACCTCAGCATTTCTAAACTTAGCCTCAGAACCTCGAAATTCTTTGAACTCGAAGGAATCTTTAGTCTCACCTCAAAACCTCAAAACCACGAAAACGTATACTCATTCAAAACGATTGACCCTATTTTTCATTCTCTCTTCTTCCCAGGAACCAGTTATTATTACACTTTTTCTAAAAACTCTTTGACGGAAAAAAAAGAGAAGCCCGCGGAGAAAAATTCTGACCAAACGTTTCAACAGAAAAAGAACCACGTGAGTGATGGGTGCCAGGTTATATAAAGGGACCTCAGGACGATGACTGGATGAAAGAATACGTCAACTGAAATCTCAAATTTCACACATTGGTTATTGATGTGTTCGCTTGGGGCTTCTAGGTTAGACCAAATTTCATCTAGGTGCCCAATGATTAGAAATTCAAAAAAAATTCTGGTGCTCAATTTATTTGCTCAACTAGAAAGTTATAAAGTTGAAAAGGTCAGGAATACRAAAAAAAAAAGAAAAAGAAGAAGAACCCAAAGTTTGCGGGAAAGTGGGCGTGGCCTATTTCCCTTCACTTGTATGGACGGGATACAAAGGATTACAATGGGGTTAAAATTGAGTAAGCTGAAAAAGGGAAGGAGTTGAAAATGGGCAGATAATCCAAAAAGACAGACAGAGAAAGAAAAAAAAAGAAAACAGAGCAAAATGATTGATTGTACTTGAATAGAACGAGAAAAAGAAGAAGCTACAGAAAGTAAGAAAAAAAGAAGTATGACAAAAAATGAGAGTTCGTCAAAGTTAATCTTCTTCTTCGAGATTCTTCTTTGCTTTTCGACTACGACGTTTTCGTGTTTTCGGCGCTGTGTTGCAGAGTTCCAGGGGTCTTTTGACTTTGTTCAGACGGAAGTACAAGTTACAGGCAATGAAAAAATATGTTTTCCTGGACCATCACTATATGTATTCTCTTATAGGATCCCAATAGAAGTCATTTCAATTTGAGGTCAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATACGTCAACTGAAATCTCAAA</pcr_primer_p1>
		<pcr_primer_p2>CATACAAGTGAAGGGAAATAGG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AATACGTCAACTGAAATCTCAAATTTCACACATTGGTTATTGATGTGTTCGCTTGGGGCTTCTAGGTTAGACCAAATTTCATCTAGGTGCCCAATGATTAGAAATTCAAAAAAAATTCTGGTGCTCAATTTATTTGCTCAACTAGAAAGTTATAAAGTTGAAAAGGTCAGGAATACAAAAAAAAAAAGAAAAAGAAGAAGAACCCAAAGTTTGCGGGAAAGTGGGCGTGGCCTATTTCCCTTCACTTGTATG</canonical_amplicon>
		<polymorphic_amplicon>AATACGTCAACTGAAATCTCAAATTTCACACATTGGTTATTGATGTGTTCGCTTGGGGCTTCTAGGTTAGACCAAATTTCATCTAGGTGCCCAATGATTAGAAATTCAAAAAAAATTCTGGTGCTCAATTTATTTGCTCAACTAGAAAGTTATAAAGTTGAAAAGGTCAGGAATACRAAAAAAAAAAGAAAAAGAAGAAGAACCCAAAGTTTGCGGGAAAGTGGGCGTGGCCTATTTCCCTTCACTTGTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29360</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>209806</contig_pos>
        <strand></strand>
        <context>CCGAATTTTG[A/T]YAATTGTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTG</left_flank>
        <right_flank>AAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTT</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCGAGATTCTTCTTTGCTTTTCGACTACGACGTTTTCGTGTTTTCGGCGCTGTGTTGCAGAGTTCCAGGGGTCTTTTGACTTTGTTCAGACGGAAGTACAAGTTACAGGCACTGAAATAATTTAACTTTTTGATTAAACTATTCTGGAACGAAAGTTTGGAGCAGTAGTCGTGACCGACTGAAAAAACTGAAAACGCACGATAACTGAAAAAAAACCGATCCTGAAAATAAAAATATTTTCAGGTTACGGTAGTTATCGTTGTGAACAGTTATCGTTGTGAACTTTTATACCAGAATAATAATAAAGAAATCATAGTTTTTTAGGTTGCTGTCAATTTCAAAATACAGTAACCTTCTGGAACGTTCTGGAGCACCTCTCAAAAATTTGGCATTTTTCAATTTTCGATTAAAAATGTTTATCAAGCCATTTAGTGTTGGTCTCACATTCGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGAAAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGGTCTCACATTCGCACTTCAATGATCACTCCCTGTGGGACCCATTTTCTGTTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATCTCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACATTGGAAATGAGCAAGAGGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGT</canonical>
            <polymorphic>CTTCGAGATTCTTCTTTGCTTTTCGACTACGACGTTTTCGTGTTTTCGGCGCTGTGTTGCAGAGTTCCAGGGGTCTTTTGACTTTGTTCAGACGGAAGTACAAGTTACAGGCACTGAAATAATTTAACTTTTTGATTAAACTATTCTGGAACGAAAGTTTGGAGCAGTAGTCGTGACCGACTGAAAAAACTGAAAACGCACGATAACTGAAAAAAAACCGATCCTGAAAATAAAAATATTTTCAGGTTACGGTAGTTATCGTTGTGAACAGTTATCGTTGTGAACTTTTATACCAGAATAATAATAAAGAAATCATAGTTTTTTAGGTTGCTGTCAATTTCAAAATACAGTAACCTTCTGGAACGTTCTGGAGCACCTCTCAAAAATTTGGCATTTTTCAATTTTCGATTAAAAATGTTTATCAAGCCATTTAGTGTTGGTCTCACATTCGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGWAAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGGTCTCACATTCGCACTTCAATGATCACTCCCTGTGGGACCCATTTTCTGTTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATCTCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACATTGGAAATGAGCAAGAGGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTAGTGTTGGTCTCACATTC</pcr_primer_p1>
		<pcr_primer_p2>AAGATGTTTCTTTTTGGAGTCAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATTTAGTGTTGGTCTCACATTCGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGAAAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTT</canonical_amplicon>
		<polymorphic_amplicon>CATTTAGTGTTGGTCTCACATTCGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGWAAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29361</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>209807</contig_pos>
        <strand>+</strand>
        <context>CGAATTTTGW[C/T]AATTGTTTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGA</left_flank>
        <right_flank>AATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGAGATTCTTCTTTGCTTTTCGACTACGACGTTTTCGTGTTTTCGGCGCTGTGTTGCAGAGTTCCAGGGGTCTTTTGACTTTGTTCAGACGGAAGTACAAGTTACAGGCACTGAAATAATTTAACTTTTTGATTAAACTATTCTGGAACGAAAGTTTGGAGCAGTAGTCGTGACCGACTGAAAAAACTGAAAACGCACGATAACTGAAAAAAAACCGATCCTGAAAATAAAAATATTTTCAGGTTACGGTAGTTATCGTTGTGAACAGTTATCGTTGTGAACTTTTATACCAGAATAATAATAAAGAAATCATAGTTTTTTAGGTTGCTGTCAATTTCAAAATACAGTAACCTTCTGGAACGTTCTGGAGCACCTCTCAAAAATTTGGCATTTTTCAATTTTCGATTAAAAATGTTTATCAAGCCATTTAGTGTTGGTCTCACATTCGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGAAAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGGTCTCACATTCGCACTTCAATGATCACTCCCTGTGGGACCCATTTTCTGTTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATCTCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACATTGGAAATGAGCAAGAGGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTC</canonical>
            <polymorphic>TTCGAGATTCTTCTTTGCTTTTCGACTACGACGTTTTCGTGTTTTCGGCGCTGTGTTGCAGAGTTCCAGGGGTCTTTTGACTTTGTTCAGACGGAAGTACAAGTTACAGGCACTGAAATAATTTAACTTTTTGATTAAACTATTCTGGAACGAAAGTTTGGAGCAGTAGTCGTGACCGACTGAAAAAACTGAAAACGCACGATAACTGAAAAAAAACCGATCCTGAAAATAAAAATATTTTCAGGTTACGGTAGTTATCGTTGTGAACAGTTATCGTTGTGAACTTTTATACCAGAATAATAATAAAGAAATCATAGTTTTTTAGGTTGCTGTCAATTTCAAAATACAGTAACCTTCTGGAACGTTCTGGAGCACCTCTCAAAAATTTGGCATTTTTCAATTTTCGATTAAAAATGTTTATCAAGCCATTTAGTGTTGGTCTCACATTCGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGAYAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGGTCTCACATTCGCACTTCAATGATCACTCCCTGTGGGACCCATTTTCTGTTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATCTCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACATTGGAAATGAGCAAGAGGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTAGTGTTGGTCTCACATTC</pcr_primer_p1>
		<pcr_primer_p2>AAGATGTTTCTTTTTGGAGTCAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATTTAGTGTTGGTCTCACATTCGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGAAAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTT</canonical_amplicon>
		<polymorphic_amplicon>CATTTAGTGTTGGTCTCACATTCGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGAYAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29362</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>209853</contig_pos>
        <strand>+</strand>
        <context>AATTTGGTGA[A/T]TTTTYATTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGAAAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGA</left_flank>
        <right_flank>TTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCGCTGTGTTGCAGAGTTCCAGGGGTCTTTTGACTTTGTTCAGACGGAAGTACAAGTTACAGGCACTGAAATAATTTAACTTTTTGATTAAACTATTCTGGAACGAAAGTTTGGAGCAGTAGTCGTGACCGACTGAAAAAACTGAAAACGCACGATAACTGAAAAAAAACCGATCCTGAAAATAAAAATATTTTCAGGTTACGGTAGTTATCGTTGTGAACAGTTATCGTTGTGAACTTTTATACCAGAATAATAATAAAGAAATCATAGTTTTTTAGGTTGCTGTCAATTTCAAAATACAGTAACCTTCTGGAACGTTCTGGAGCACCTCTCAAAAATTTGGCATTTTTCAATTTTCGATTAAAAATGTTTATCAAGCCATTTAGTGTTGGTCTCACATTCGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGAAAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGGTCTCACATTCGCACTTCAATGATCACTCCCTGTGGGACCCATTTTCTGTTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATCTCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACATTGGAAATGAGCAAGAGGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTCTAGAATTATTAAACTTTTGGAATATCAGATGTTGGAACCTTTT</canonical>
            <polymorphic>GGCGCTGTGTTGCAGAGTTCCAGGGGTCTTTTGACTTTGTTCAGACGGAAGTACAAGTTACAGGCACTGAAATAATTTAACTTTTTGATTAAACTATTCTGGAACGAAAGTTTGGAGCAGTAGTCGTGACCGACTGAAAAAACTGAAAACGCACGATAACTGAAAAAAAACCGATCCTGAAAATAAAAATATTTTCAGGTTACGGTAGTTATCGTTGTGAACAGTTATCGTTGTGAACTTTTATACCAGAATAATAATAAAGAAATCATAGTTTTTTAGGTTGCTGTCAATTTCAAAATACAGTAACCTTCTGGAACGTTCTGGAGCACCTCTCAAAAATTTGGCATTTTTCAATTTTCGATTAAAAATGTTTATCAAGCCATTTAGTGTTGGTCTCACATTCGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGAAAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAWTTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGGTCTCACATTCGCACTTCAATGATCACTCCCTGTGGGACCCATTTTCTGTTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATCTCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACATTGGAAATGAGCAAGAGGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTCTAGAATTATTAAACTTTTGGAATATCAGATGTTGGAACCTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>390 337 84 66 34 20 19 10 9 8 8 8 7</canonical_bands>
                <polymorphic_bands>390 337 84 66 54 19 10 9 8 8 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>235 215 82 73 69 64 49 40 26 20 17 15 10 10 9 9 9 9 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>235 215 82 73 69 64 49 40 29 26 17 15 10 10 9 9 9 8 8 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTTAGTGTTGGTCTCACATTC</pcr_primer_p1>
		<pcr_primer_p2>AAGATGTTTCTTTTTGGAGTCAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATTTAGTGTTGGTCTCACATTCGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGAAAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTT</canonical_amplicon>
		<polymorphic_amplicon>CATTTAGTGTTGGTCTCACATTCGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGAAAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAWTTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29363</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>209858</contig_pos>
        <strand></strand>
        <context>GGTGAWTTTT[C/T]ATTTCTTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTT</left_flank>
        <right_flank>ATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACT</right_flank>
        <qual_score>35</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGTTGCAGAGTTCCAGGGGTCTTTTGACTTTGTTCAGACGGAAGTACAAGTTACAGGCACTGAAATAATTTAACTTTTTGATTAAACTATTCTGGAACGAAAGTTTGGAGCAGTAGTCGTGACCGACTGAAAAAACTGAAAACGCACGATAACTGAAAAAAAACCGATCCTGAAAATAAAAATATTTTCAGGTTACGGTAGTTATCGTTGTGAACAGTTATCGTTGTGAACTTTTATACCAGAATAATAATAAAGAAATCATAGTTTTTTAGGTTGCTGTCAATTTCAAAATACAGTAACCTTCTGGAACGTTCTGGAGCACCTCTCAAAAATTTGGCATTTTTCAATTTTCGATTAAAAATGTTTATCAAGCCATTTAGTGTTGGTCTCACATTCGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGAAAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGGTCTCACATTCGCACTTCAATGATCACTCCCTGTGGGACCCATTTTCTGTTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATCTCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACATTGGAAATGAGCAAGAGGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTCTAGAATTATTAAACTTTTGGAATATCAGATGTTGGAACCTTTTAGTTG</canonical>
            <polymorphic>TGTGTTGCAGAGTTCCAGGGGTCTTTTGACTTTGTTCAGACGGAAGTACAAGTTACAGGCACTGAAATAATTTAACTTTTTGATTAAACTATTCTGGAACGAAAGTTTGGAGCAGTAGTCGTGACCGACTGAAAAAACTGAAAACGCACGATAACTGAAAAAAAACCGATCCTGAAAATAAAAATATTTTCAGGTTACGGTAGTTATCGTTGTGAACAGTTATCGTTGTGAACTTTTATACCAGAATAATAATAAAGAAATCATAGTTTTTTAGGTTGCTGTCAATTTCAAAATACAGTAACCTTCTGGAACGTTCTGGAGCACCTCTCAAAAATTTGGCATTTTTCAATTTTCGATTAAAAATGTTTATCAAGCCATTTAGTGTTGGTCTCACATTCGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGAAAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTYATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGGTCTCACATTCGCACTTCAATGATCACTCCCTGTGGGACCCATTTTCTGTTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATCTCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACATTGGAAATGAGCAAGAGGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTCTAGAATTATTAAACTTTTGGAATATCAGATGTTGGAACCTTTTAGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTAGTGTTGGTCTCACATTC</pcr_primer_p1>
		<pcr_primer_p2>AAGATGTTTCTTTTTGGAGTCAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATTTAGTGTTGGTCTCACATTCGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGAAAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTT</canonical_amplicon>
		<polymorphic_amplicon>CATTTAGTGTTGGTCTCACATTCGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGAAAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTYATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29364</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>209883</contig_pos>
        <strand></strand>
        <context>ATTTTTCCAA[A/T]TTTTTTAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAA</left_flank>
        <right_flank>TTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAA</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGACTTTGTTCAGACGGAAGTACAAGTTACAGGCACTGAAATAATTTAACTTTTTGATTAAACTATTCTGGAACGAAAGTTTGGAGCAGTAGTCGTGACCGACTGAAAAAACTGAAAACGCACGATAACTGAAAAAAAACCGATCCTGAAAATAAAAATATTTTCAGGTTACGGTAGTTATCGTTGTGAACAGTTATCGTTGTGAACTTTTATACCAGAATAATAATAAAGAAATCATAGTTTTTTAGGTTGCTGTCAATTTCAAAATACAGTAACCTTCTGGAACGTTCTGGAGCACCTCTCAAAAATTTGGCATTTTTCAATTTTCGATTAAAAATGTTTATCAAGCCATTTAGTGTTGGTCTCACATTCGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGAAAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGGTCTCACATTCGCACTTCAATGATCACTCCCTGTGGGACCCATTTTCTGTTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATCTCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACATTGGAAATGAGCAAGAGGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTCTAGAATTATTAAACTTTTGGAATATCAGATGTTGGAACCTTTTAGTTGAAAATGGTCAACTAAGAGTGTCTAA</canonical>
            <polymorphic>TTGACTTTGTTCAGACGGAAGTACAAGTTACAGGCACTGAAATAATTTAACTTTTTGATTAAACTATTCTGGAACGAAAGTTTGGAGCAGTAGTCGTGACCGACTGAAAAAACTGAAAACGCACGATAACTGAAAAAAAACCGATCCTGAAAATAAAAATATTTTCAGGTTACGGTAGTTATCGTTGTGAACAGTTATCGTTGTGAACTTTTATACCAGAATAATAATAAAGAAATCATAGTTTTTTAGGTTGCTGTCAATTTCAAAATACAGTAACCTTCTGGAACGTTCTGGAGCACCTCTCAAAAATTTGGCATTTTTCAATTTTCGATTAAAAATGTTTATCAAGCCATTTAGTGTTGGTCTCACATTCGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGAAAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAWTTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGGTCTCACATTCGCACTTCAATGATCACTCCCTGTGGGACCCATTTTCTGTTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATCTCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACATTGGAAATGAGCAAGAGGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTCTAGAATTATTAAACTTTTGGAATATCAGATGTTGGAACCTTTTAGTTGAAAATGGTCAACTAAGAGTGTCTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>390 307 96 84 34 20 19 10 9 8 8 8 7</canonical_bands>
                <polymorphic_bands>390 307 96 84 34 20 19 19 8 8 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>235 215 82 70 69 64 49 43 26 20 17 15 10 10 9 9 9 9 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>235 215 82 70 69 64 49 43 26 20 19 17 15 10 9 9 9 8 8 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGTTTCGAATTTTGTGATT</pcr_primer_p1>
		<pcr_primer_p2>GAGACCAACACAAATGACTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGGTCTC</canonical_amplicon>
		<polymorphic_amplicon>AATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAWTTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29365</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>209958</contig_pos>
        <strand>+</strand>
        <context>GTTCACTTGG[A/G]AATGACTCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGG</left_flank>
        <right_flank>AATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAGTTTGGAGCAGTAGTCGTGACCGACTGAAAAAACTGAAAACGCACGATAACTGAAAAAAAACCGATCCTGAAAATAAAAATATTTTCAGGTTACGGTAGTTATCGTTGTGAACAGTTATCGTTGTGAACTTTTATACCAGAATAATAATAAAGAAATCATAGTTTTTTAGGTTGCTGTCAATTTCAAAATACAGTAACCTTCTGGAACGTTCTGGAGCACCTCTCAAAAATTTGGCATTTTTCAATTTTCGATTAAAAATGTTTATCAAGCCATTTAGTGTTGGTCTCACATTCGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGAAAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGGTCTCACATTCGCACTTCAATGATCACTCCCTGTGGGACCCATTTTCTGTTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATCTCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACATTGGAAATGAGCAAGAGGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTCTAGAATTATTAAACTTTTGGAATATCAGATGTTGGAACCTTTTAGTTGAAAATGGTCAACTAAGAGTGTCTAAATAAAGACGTAAAGGTGGGGAACATGAAAAAATAACTATCTCAAAATTTTGTTCAGTTAAGCCTCTTGATGAGTT</canonical>
            <polymorphic>GAAAGTTTGGAGCAGTAGTCGTGACCGACTGAAAAAACTGAAAACGCACGATAACTGAAAAAAAACCGATCCTGAAAATAAAAATATTTTCAGGTTACGGTAGTTATCGTTGTGAACAGTTATCGTTGTGAACTTTTATACCAGAATAATAATAAAGAAATCATAGTTTTTTAGGTTGCTGTCAATTTCAAAATACAGTAACCTTCTGGAACGTTCTGGAGCACCTCTCAAAAATTTGGCATTTTTCAATTTTCGATTAAAAATGTTTATCAAGCCATTTAGTGTTGGTCTCACATTCGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGAAAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGRAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGGTCTCACATTCGCACTTCAATGATCACTCCCTGTGGGACCCATTTTCTGTTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATCTCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACATTGGAAATGAGCAAGAGGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTCTAGAATTATTAAACTTTTGGAATATCAGATGTTGGAACCTTTTAGTTGAAAATGGTCAACTAAGAGTGTCTAAATAAAGACGTAAAGGTGGGGAACATGAAAAAATAACTATCTCAAAATTTTGTTCAGTTAAGCCTCTTGATGAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGTTTCGAATTTTGTGATT</pcr_primer_p1>
		<pcr_primer_p2>GAGACCAACACAAATGACTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGGTCTC</canonical_amplicon>
		<polymorphic_amplicon>AATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGRAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29366</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>210000</contig_pos>
        <strand>+</strand>
        <context>AACTACCCAC[A/G]CATTGGAACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCAC</left_flank>
        <right_flank>CATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACGCACGATAACTGAAAAAAAACCGATCCTGAAAATAAAAATATTTTCAGGTTACGGTAGTTATCGTTGTGAACAGTTATCGTTGTGAACTTTTATACCAGAATAATAATAAAGAAATCATAGTTTTTTAGGTTGCTGTCAATTTCAAAATACAGTAACCTTCTGGAACGTTCTGGAGCACCTCTCAAAAATTTGGCATTTTTCAATTTTCGATTAAAAATGTTTATCAAGCCATTTAGTGTTGGTCTCACATTCGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGAAAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGGTCTCACATTCGCACTTCAATGATCACTCCCTGTGGGACCCATTTTCTGTTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATCTCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACATTGGAAATGAGCAAGAGGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTCTAGAATTATTAAACTTTTGGAATATCAGATGTTGGAACCTTTTAGTTGAAAATGGTCAACTAAGAGTGTCTAAATAAAGACGTAAAGGTGGGGAACATGAAAAAATAACTATCTCAAAATTTTGTTCAGTTAAGCCTCTTGATGAGTTGAACTTGTGTTGAAGGCGTGGAGCTGCTACCGACTGAGCTAC</canonical>
            <polymorphic>AACGCACGATAACTGAAAAAAAACCGATCCTGAAAATAAAAATATTTTCAGGTTACGGTAGTTATCGTTGTGAACAGTTATCGTTGTGAACTTTTATACCAGAATAATAATAAAGAAATCATAGTTTTTTAGGTTGCTGTCAATTTCAAAATACAGTAACCTTCTGGAACGTTCTGGAGCACCTCTCAAAAATTTGGCATTTTTCAATTTTCGATTAAAAATGTTTATCAAGCCATTTAGTGTTGGTCTCACATTCGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGAAAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACRCATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGGTCTCACATTCGCACTTCAATGATCACTCCCTGTGGGACCCATTTTCTGTTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATCTCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACATTGGAAATGAGCAAGAGGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTCTAGAATTATTAAACTTTTGGAATATCAGATGTTGGAACCTTTTAGTTGAAAATGGTCAACTAAGAGTGTCTAAATAAAGACGTAAAGGTGGGGAACATGAAAAAATAACTATCTCAAAATTTTGTTCAGTTAAGCCTCTTGATGAGTTGAACTTGTGTTGAAGGCGTGGAGCTGCTACCGACTGAGCTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>101 93 83 77 67 67 66 61 36 35 34 32 30 27 25 22 22 16 14 12 12 11 9 9 9 8 8 6 6 2</canonical_bands>
                <polymorphic_bands>101 93 83 77 67 67 66 61 36 35 34 32 30 27 25 22 22 16 16 12 12 11 9 9 9 8 8 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGTTTCGAATTTTGTGATT</pcr_primer_p1>
		<pcr_primer_p2>GAGACCAACACAAATGACTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGGTCTC</canonical_amplicon>
		<polymorphic_amplicon>AATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACRCATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29367</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>210023</contig_pos>
        <strand>+</strand>
        <context>CACTAAACCA[G/T]GTAACTCAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCA</left_flank>
        <right_flank>GTAACTCAGTAGAGTCATTTGTGTTGGTCTCACATTCGCACTTCAATGAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGATCCTGAAAATAAAAATATTTTCAGGTTACGGTAGTTATCGTTGTGAACAGTTATCGTTGTGAACTTTTATACCAGAATAATAATAAAGAAATCATAGTTTTTTAGGTTGCTGTCAATTTCAAAATACAGTAACCTTCTGGAACGTTCTGGAGCACCTCTCAAAAATTTGGCATTTTTCAATTTTCGATTAAAAATGTTTATCAAGCCATTTAGTGTTGGTCTCACATTCGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGAAAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGGTCTCACATTCGCACTTCAATGATCACTCCCTGTGGGACCCATTTTCTGTTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATCTCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACATTGGAAATGAGCAAGAGGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTCTAGAATTATTAAACTTTTGGAATATCAGATGTTGGAACCTTTTAGTTGAAAATGGTCAACTAAGAGTGTCTAAATAAAGACGTAAAGGTGGGGAACATGAAAAAATAACTATCTCAAAATTTTGTTCAGTTAAGCCTCTTGATGAGTTGAACTTGTGTTGAAGGCGTGGAGCTGCTACCGACTGAGCTACAAGCACTGCCGAGGGGCATCCAT</canonical>
            <polymorphic>CCGATCCTGAAAATAAAAATATTTTCAGGTTACGGTAGTTATCGTTGTGAACAGTTATCGTTGTGAACTTTTATACCAGAATAATAATAAAGAAATCATAGTTTTTTAGGTTGCTGTCAATTTCAAAATACAGTAACCTTCTGGAACGTTCTGGAGCACCTCTCAAAAATTTGGCATTTTTCAATTTTCGATTAAAAATGTTTATCAAGCCATTTAGTGTTGGTCTCACATTCGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGAAAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCAKGTAACTCAGTAGAGTCATTTGTGTTGGTCTCACATTCGCACTTCAATGATCACTCCCTGTGGGACCCATTTTCTGTTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATCTCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACATTGGAAATGAGCAAGAGGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTCTAGAATTATTAAACTTTTGGAATATCAGATGTTGGAACCTTTTAGTTGAAAATGGTCAACTAAGAGTGTCTAAATAAAGACGTAAAGGTGGGGAACATGAAAAAATAACTATCTCAAAATTTTGTTCAGTTAAGCCTCTTGATGAGTTGAACTTGTGTTGAAGGCGTGGAGCTGCTACCGACTGAGCTACAAGCACTGCCGAGGGGCATCCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>498 385 117</canonical_bands>
                <polymorphic_bands>883 117</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCCGAAACGACTTAAACTAT</pcr_primer_p1>
		<pcr_primer_p2>GATCTGGAGTGCAAGTGAGT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGGTCTCACATTCGCACTTCAATGATCACTCCCTGTGGGACCCATTTTCTGTTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATC</canonical_amplicon>
		<polymorphic_amplicon>ATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCAKGTAACTCAGTAGAGTCATTTGTGTTGGTCTCACATTCGCACTTCAATGATCACTCCCTGTGGGACCCATTTTCTGTTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29368</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>210071</contig_pos>
        <strand>+</strand>
        <context>GCACTTCAAT[C/G]ATCACTCCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CATGTAACTCAGTAGAGTCATTTGTGTTGGTCTCACATTCGCACTTCAAT</left_flank>
        <right_flank>ATCACTCCCTGTGGGACCCATTTTCTGTTTTTTCTGCTTTTGCATTGTGT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACAGTTATCGTTGTGAACTTTTATACCAGAATAATAATAAAGAAATCATAGTTTTTTAGGTTGCTGTCAATTTCAAAATACAGTAACCTTCTGGAACGTTCTGGAGCACCTCTCAAAAATTTGGCATTTTTCAATTTTCGATTAAAAATGTTTATCAAGCCATTTAGTGTTGGTCTCACATTCGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGAAAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGGTCTCACATTCGCACTTCAATGATCACTCCCTGTGGGACCCATTTTCTGTTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATCTCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACATTGGAAATGAGCAAGAGGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTCTAGAATTATTAAACTTTTGGAATATCAGATGTTGGAACCTTTTAGTTGAAAATGGTCAACTAAGAGTGTCTAAATAAAGACGTAAAGGTGGGGAACATGAAAAAATAACTATCTCAAAATTTTGTTCAGTTAAGCCTCTTGATGAGTTGAACTTGTGTTGAAGGCGTGGAGCTGCTACCGACTGAGCTACAAGCACTGCCGAGGGGCATCCATATTTTTTGAAATTGGCGCCATTTTCGGATGTCCCAGTGAACGGGATTT</canonical>
            <polymorphic>GAACAGTTATCGTTGTGAACTTTTATACCAGAATAATAATAAAGAAATCATAGTTTTTTAGGTTGCTGTCAATTTCAAAATACAGTAACCTTCTGGAACGTTCTGGAGCACCTCTCAAAAATTTGGCATTTTTCAATTTTCGATTAAAAATGTTTATCAAGCCATTTAGTGTTGGTCTCACATTCGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGAAAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGGTCTCACATTCGCACTTCAATSATCACTCCCTGTGGGACCCATTTTCTGTTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATCTCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACATTGGAAATGAGCAAGAGGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTCTAGAATTATTAAACTTTTGGAATATCAGATGTTGGAACCTTTTAGTTGAAAATGGTCAACTAAGAGTGTCTAAATAAAGACGTAAAGGTGGGGAACATGAAAAAATAACTATCTCAAAATTTTGTTCAGTTAAGCCTCTTGATGAGTTGAACTTGTGTTGAAGGCGTGGAGCTGCTACCGACTGAGCTACAAGCACTGCCGAGGGGCATCCATATTTTTTGAAATTGGCGCCATTTTCGGATGTCCCAGTGAACGGGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>499 405 96</canonical_bands>
                <polymorphic_bands>595 405</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCCGAAACGACTTAAACTAT</pcr_primer_p1>
		<pcr_primer_p2>GATCTGGAGTGCAAGTGAGT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGGTCTCACATTCGCACTTCAATGATCACTCCCTGTGGGACCCATTTTCTGTTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATC</canonical_amplicon>
		<polymorphic_amplicon>ATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGGTCTCACATTCGCACTTCAATSATCACTCCCTGTGGGACCCATTTTCTGTTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29369</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>210142</contig_pos>
        <strand>+</strand>
        <context>CAATTTAGAA[G/T]CCAAAAAGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTCTGTTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAA</left_flank>
        <right_flank>CCAAAAAGACTCACTTGCACTCCAGATCTCCCTCCTCATTCTTTCGCCAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCAAAATACAGTAACCTTCTGGAACGTTCTGGAGCACCTCTCAAAAATTTGGCATTTTTCAATTTTCGATTAAAAATGTTTATCAAGCCATTTAGTGTTGGTCTCACATTCGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGAAAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGGTCTCACATTCGCACTTCAATGATCACTCCCTGTGGGACCCATTTTCTGTTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATCTCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACATTGGAAATGAGCAAGAGGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTCTAGAATTATTAAACTTTTGGAATATCAGATGTTGGAACCTTTTAGTTGAAAATGGTCAACTAAGAGTGTCTAAATAAAGACGTAAAGGTGGGGAACATGAAAAAATAACTATCTCAAAATTTTGTTCAGTTAAGCCTCTTGATGAGTTGAACTTGTGTTGAAGGCGTGGAGCTGCTACCGACTGAGCTACAAGCACTGCCGAGGGGCATCCATATTTTTTGAAATTGGCGCCATTTTCGGATGTCCCAGTGAACGGGATTTTATCTCGGTTCTTTTGAAATATATCGAAAATCGTCAACTGGTAAATTGTTCATTAGAATATCGCAAACTTT</canonical>
            <polymorphic>ATTTCAAAATACAGTAACCTTCTGGAACGTTCTGGAGCACCTCTCAAAAATTTGGCATTTTTCAATTTTCGATTAAAAATGTTTATCAAGCCATTTAGTGTTGGTCTCACATTCGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGAAAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGGTCTCACATTCGCACTTCAATGATCACTCCCTGTGGGACCCATTTTCTGTTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAAKCCAAAAAGACTCACTTGCACTCCAGATCTCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACATTGGAAATGAGCAAGAGGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTCTAGAATTATTAAACTTTTGGAATATCAGATGTTGGAACCTTTTAGTTGAAAATGGTCAACTAAGAGTGTCTAAATAAAGACGTAAAGGTGGGGAACATGAAAAAATAACTATCTCAAAATTTTGTTCAGTTAAGCCTCTTGATGAGTTGAACTTGTGTTGAAGGCGTGGAGCTGCTACCGACTGAGCTACAAGCACTGCCGAGGGGCATCCATATTTTTTGAAATTGGCGCCATTTTCGGATGTCCCAGTGAACGGGATTTTATCTCGGTTCTTTTGAAATATATCGAAAATCGTCAACTGGTAAATTGTTCATTAGAATATCGCAAACTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>448 320 104 73 44 11</canonical_bands>
                <polymorphic_bands>448 320 115 73 44</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTGTGTTGGTCTCACATTC</pcr_primer_p1>
		<pcr_primer_p2>ATTTACGAACTAAAAGTGCCTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTTGTGTTGGTCTCACATTCGCACTTCAATGATCACTCCCTGTGGGACCCATTTTCTGTTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATCTCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACATTGGAAATGAGCAAGAGGCACTTTTAGTTCGTAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATTTGTGTTGGTCTCACATTCGCACTTCAATGATCACTCCCTGTGGGACCCATTTTCTGTTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAAKCCAAAAAGACTCACTTGCACTCCAGATCTCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACATTGGAAATGAGCAAGAGGCACTTTTAGTTCGTAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29370</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>210171</contig_pos>
        <strand>+</strand>
        <context>ACTCCAGATC[C/T]CCCTCCTCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATC</left_flank>
        <right_flank>CCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGGAGCACCTCTCAAAAATTTGGCATTTTTCAATTTTCGATTAAAAATGTTTATCAAGCCATTTAGTGTTGGTCTCACATTCGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGAAAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGGTCTCACATTCGCACTTCAATGATCACTCCCTGTGGGACCCATTTTCTGTTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATCTCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACATTGGAAATGAGCAAGAGGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTCTAGAATTATTAAACTTTTGGAATATCAGATGTTGGAACCTTTTAGTTGAAAATGGTCAACTAAGAGTGTCTAAATAAAGACGTAAAGGTGGGGAACATGAAAAAATAACTATCTCAAAATTTTGTTCAGTTAAGCCTCTTGATGAGTTGAACTTGTGTTGAAGGCGTGGAGCTGCTACCGACTGAGCTACAAGCACTGCCGAGGGGCATCCATATTTTTTGAAATTGGCGCCATTTTCGGATGTCCCAGTGAACGGGATTTTATCTCGGTTCTTTTGAAATATATCGAAAATCGTCAACTGGTAAATTGTTCATTAGAATATCGCAAACTTTTTATCAGTTGACCACTTTTTGAAATCTTG</canonical>
            <polymorphic>TTCTGGAGCACCTCTCAAAAATTTGGCATTTTTCAATTTTCGATTAAAAATGTTTATCAAGCCATTTAGTGTTGGTCTCACATTCGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGAAAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGGTCTCACATTCGCACTTCAATGATCACTCCCTGTGGGACCCATTTTCTGTTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATCYCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACATTGGAAATGAGCAAGAGGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTCTAGAATTATTAAACTTTTGGAATATCAGATGTTGGAACCTTTTAGTTGAAAATGGTCAACTAAGAGTGTCTAAATAAAGACGTAAAGGTGGGGAACATGAAAAAATAACTATCTCAAAATTTTGTTCAGTTAAGCCTCTTGATGAGTTGAACTTGTGTTGAAGGCGTGGAGCTGCTACCGACTGAGCTACAAGCACTGCCGAGGGGCATCCATATTTTTTGAAATTGGCGCCATTTTCGGATGTCCCAGTGAACGGGATTTTATCTCGGTTCTTTTGAAATATATCGAAAATCGTCAACTGGTAAATTGTTCATTAGAATATCGCAAACTTTTTATCAGTTGACCACTTTTTGAAATCTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTTGCATTGTGTACTCTGAC</pcr_primer_p1>
		<pcr_primer_p2>CTAAAAGGTTCCAACATCTGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTTTTGCATTGTGTACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATCTCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACATTGGAAATGAGCAAGAGGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTCTAGAATTATTAAACTTTTGGAATATCAGATGTTGGAACCTTTTAG</canonical_amplicon>
		<polymorphic_amplicon>CTTTTGCATTGTGTACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATCYCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACATTGGAAATGAGCAAGAGGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTCTAGAATTATTAAACTTTTGGAATATCAGATGTTGGAACCTTTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29371</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>210255</contig_pos>
        <strand>+</strand>
        <context>ATTGAGAACA[A/T]TGGAAATGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACA</left_flank>
        <right_flank>TGGAAATGAGCAAGAGGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGAAAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGGTCTCACATTCGCACTTCAATGATCACTCCCTGTGGGACCCATTTTCTGTTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATCTCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACATTGGAAATGAGCAAGAGGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTCTAGAATTATTAAACTTTTGGAATATCAGATGTTGGAACCTTTTAGTTGAAAATGGTCAACTAAGAGTGTCTAAATAAAGACGTAAAGGTGGGGAACATGAAAAAATAACTATCTCAAAATTTTGTTCAGTTAAGCCTCTTGATGAGTTGAACTTGTGTTGAAGGCGTGGAGCTGCTACCGACTGAGCTACAAGCACTGCCGAGGGGCATCCATATTTTTTGAAATTGGCGCCATTTTCGGATGTCCCAGTGAACGGGATTTTATCTCGGTTCTTTTGAAATATATCGAAAATCGTCAACTGGTAAATTGTTCATTAGAATATCGCAAACTTTTTATCAGTTGACCACTTTTTGAAATCTTGCATAGGAGCCGAGATAATTGAGCTCAAACGTAACAGACACTTCTATCAAAGGCTTTACGGTGTGTAATGCAAGTGCGCTCTATC</canonical>
            <polymorphic>CGCACTTCAATCAGTTTAGAATTTTAGAATTTTAAAATTTCCGAATTTTGAAAATTGTTTCGAATTTTGTGATTTTTCGAATTAACTAATTTGGTGAATTTTCATTTCTTTTCTGAAATTTTTCCAAATTTTTTAAATTCTGAATTTGAAACTCTACTTATGTCTTCAACATCCCGAAACGACTTAAACTATGTTCACTTGGAAATGACTCCAAAAAGAAACATCTTCCCACTTAACTACCCACACATTGGAACGAGCACTAAACCATGTAACTCAGTAGAGTCATTTGTGTTGGTCTCACATTCGCACTTCAATGATCACTCCCTGTGGGACCCATTTTCTGTTTTTTCTGCTTTTGCATTGTGTACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATCTCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACAWTGGAAATGAGCAAGAGGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTCTAGAATTATTAAACTTTTGGAATATCAGATGTTGGAACCTTTTAGTTGAAAATGGTCAACTAAGAGTGTCTAAATAAAGACGTAAAGGTGGGGAACATGAAAAAATAACTATCTCAAAATTTTGTTCAGTTAAGCCTCTTGATGAGTTGAACTTGTGTTGAAGGCGTGGAGCTGCTACCGACTGAGCTACAAGCACTGCCGAGGGGCATCCATATTTTTTGAAATTGGCGCCATTTTCGGATGTCCCAGTGAACGGGATTTTATCTCGGTTCTTTTGAAATATATCGAAAATCGTCAACTGGTAAATTGTTCATTAGAATATCGCAAACTTTTTATCAGTTGACCACTTTTTGAAATCTTGCATAGGAGCCGAGATAATTGAGCTCAAACGTAACAGACACTTCTATCAAAGGCTTTACGGTGTGTAATGCAAGTGCGCTCTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTGCATTGTGTACTCTGAC</pcr_primer_p1>
		<pcr_primer_p2>CTAAAAGGTTCCAACATCTGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTTTTGCATTGTGTACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATCTCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACATTGGAAATGAGCAAGAGGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTCTAGAATTATTAAACTTTTGGAATATCAGATGTTGGAACCTTTTAG</canonical_amplicon>
		<polymorphic_amplicon>CTTTTGCATTGTGTACTCTGACCCCAATTTAGAATCCAAAAAGACTCACTTGCACTCCAGATCTCCCTCCTCATTCTTTCGCCACAGACTCGTTTCGGTTGTTGAGCAATTCGCGCAATTTCGGGAAATCTGAAAATATTGAGAACAWTGGAAATGAGCAAGAGGCACTTTTAGTTCGTAAATTTTAAAGGGCACTTGTCGTCTAGAATTATTAAACTTTTGGAATATCAGATGTTGGAACCTTTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29372</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>245343</contig_pos>
        <strand></strand>
        <context>cccgaccagt[C/T]acatttgagc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAAAAAGAAAAAAATATATCAAAACTAATCGAGTGTCACCCGACCAGT</left_flank>
        <right_flank>ACATTTGAGCTCAATTATCTCGGTTCCTATAAAAGATATCAAAAGTCTGT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATGAAGACCTTGAAGAAGGCAAGACATAAAGACATAAGACATTTTGCTGTCTCACCTCTCTAAACAGCAAAACCTCACATTTCAAATAGATAAAATTTCCTACAATCCCGTCTAAAAACCACCTTTCTAGCGCTTTTAGGACGCAGACGACGAGACACTCTGCGTCTCTAACCTCGGGAACTTCAAATGACCATATCTCGATTCCTAGATGAGCTAGGAAAATGGTTTTTGGACAGAATTACATAGTTTGAAACGGATTTTCAGATTATTAAAGAGGTTTTGAGTTGAATTTAGGACATTTTAACAATTTCAGAAATAAGCAAATATCCGAAAAAACTAGGAATTTTCTAAAAACTCTGTAAATGCAAAGTTTTCAATCTAGGTATGTTTTACATTCTCCAAAGTTATCAATGTCATTGGAAACTTGACAGCCGAGCTCCAGACTCCTGAAAAAAGAAAAAAATATATCAAAACTAATCGAGTGTCACCCGACCAGTCACATTTGAGCTCAATTATCTCGGTTCCTATAAAAGATATCAAAAGTCTGTCAACTAATAAAATATTGCTCATATTATGATAAACATTTTATCAATTGACAGGTTCTTAATATCTTGTTTAGGAGCCGAGATAATTGAGCTCAAAGTTGACAATCAAGGGAGCTCTTCTAATGCAGGTTTTCATATTTCCGAATTTCCAGGCGAGTAAAGTCGATGAAAAAATGTCCGGTGCCCAGCTATTTTCAATTATCTCCAACGCGGGAATGGCTGCAATTGTGGAGACAATCGAAAAAATCGAAAGCGGCAAAACTGAAAATCAAAGTGTACGGGTTGCACAAAGACACCTTCTGGACAGTGTTCAAAAGTTTCACGACACTAAACTTTAATTTTTTTTGGAATTAATGAATTGCTCAGTTTTTTGTGTTGTGCTTTATTTAGATTCGGTCATCTGTTTCATTGAAAAAGTATATTATAAAACACATTGCCTTTATCATTGGGCCA</canonical>
            <polymorphic>TCATGAAGACCTTGAAGAAGGCAAGACATAAAGACATAAGACATTTTGCTGTCTCACCTCTCTAAACAGCAAAACCTCACATTTCAAATAGATAAAATTTCCTACAATCCCGTCTAAAAACCACCTTTCTAGCGCTTTTAGGACGCAGACGACGAGACACTCTGCGTCTCTAACCTCGGGAACTTCAAATGACCATATCTCGATTCCTAGATGAGCTAGGAAAATGGTTTTTGGACAGAATTACATAGTTTGAAACGGATTTTCAGATTATTAAAGAGGTTTTGAGTTGAATTTAGGACATTTTAACAATTTCAGAAATAAGCAAATATCCGAAAAAACTAGGAATTTTCTAAAAACTCTGTAAATGCAAAGTTTTCAATCTAGGTATGTTTTACATTCTCCAAAGTTATCAATGTCATTGGAAACTTGACAGCCGAGCTCCAGACTCCTGAAAAAAGAAAAAAATATATCAAAACTAATCGAGTGTCACCCGACCAGTYACATTTGAGCTCAATTATCTCGGTTCCTATAAAAGATATCAAAAGTCTGTCAACTAATAAAATATTGCTCATATTATGATAAACATTTTATCAATTGACAGGTTCTTAATATCTTGTTTAGGAGCCGAGATAATTGAGCTCAAAGTTGACAATCAAGGGAGCTCTTCTAATGCAGGTTTTCATATTTCCGAATTTCCAGGCGAGTAAAGTCGATGAAAAAATGTCCGGTGCCCAGCTATTTTCAATTATCTCCAACGCGGGAATGGCTGCAATTGTGGAGACAATCGAAAAAATCGAAAGCGGCAAAACTGAAAATCAAAGTGTACGGGTTGCACAAAGACACCTTCTGGACAGTGTTCAAAAGTTTCACGACACTAAACTTTAATTTTTTTTGGAATTAATGAATTGCTCAGTTTTTTGTGTTGTGCTTTATTTAGATTCGGTCATCTGTTTCATTGAAAAAGTATATTATAAAACACATTGCCTTTATCATTGGGCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>327 229 56 51 48 47 46 44 36 23 22 14 13 12 11 8 5 5 3</canonical_bands>
                <polymorphic_bands>327 241 56 51 48 47 46 44 36 23 22 14 13 11 8 5 5 3</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>503 485 12</canonical_bands>
                <polymorphic_bands>515 485</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAGTTGAATTTAGGACATTTT</pcr_primer_p1>
		<pcr_primer_p2>GACTTTACTCGCCTGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>430</pcr_amplicon_size>
		<canonical_amplicon>TTGAGTTGAATTTAGGACATTTTAACAATTTCAGAAATAAGCAAATATCCGAAAAAACTAGGAATTTTCTAAAAACTCTGTAAATGCAAAGTTTTCAATCTAGGTATGTTTTACATTCTCCAAAGTTATCAATGTCATTGGAAACTTGACAGCCGAGCTCCAGACTCCTGAAAAAAGAAAAAAATATATCAAAACTAATCGAGTGTCACCCGACCAGTCACATTTGAGCTCAATTATCTCGGTTCCTATAAAAGATATCAAAAGTCTGTCAACTAATAAAATATTGCTCATATTATGATAAACATTTTATCAATTGACAGGTTCTTAATATCTTGTTTAGGAGCCGAGATAATTGAGCTCAAAGTTGACAATCAAGGGAGCTCTTCTAATGCAGGTTTTCATATTTCCGAATTTCCAGGCGAGTAAAGTC</canonical_amplicon>
		<polymorphic_amplicon>TTGAGTTGAATTTAGGACATTTTAACAATTTCAGAAATAAGCAAATATCCGAAAAAACTAGGAATTTTCTAAAAACTCTGTAAATGCAAAGTTTTCAATCTAGGTATGTTTTACATTCTCCAAAGTTATCAATGTCATTGGAAACTTGACAGCCGAGCTCCAGACTCCTGAAAAAAGAAAAAAATATATCAAAACTAATCGAGTGTCACCCGACCAGTYACATTTGAGCTCAATTATCTCGGTTCCTATAAAAGATATCAAAAGTCTGTCAACTAATAAAATATTGCTCATATTATGATAAACATTTTATCAATTGACAGGTTCTTAATATCTTGTTTAGGAGCCGAGATAATTGAGCTCAAAGTTGACAATCAAGGGAGCTCTTCTAATGCAGGTTTTCATATTTCCGAATTTCCAGGCGAGTAAAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29373</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>245413</contig_pos>
        <strand></strand>
        <context>aaatattgct[C/T]atattatgat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGGTTCCTATAAAAGATATCAAAAGTCTGTCAACTAATAAAATATTGCT</left_flank>
        <right_flank>ATATTATGATAAACATTTTATCAATTGACAGGTTCTTAATATCTTGTTTA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACCTCACATTTCAAATAGATAAAATTTCCTACAATCCCGTCTAAAAACCACCTTTCTAGCGCTTTTAGGACGCAGACGACGAGACACTCTGCGTCTCTAACCTCGGGAACTTCAAATGACCATATCTCGATTCCTAGATGAGCTAGGAAAATGGTTTTTGGACAGAATTACATAGTTTGAAACGGATTTTCAGATTATTAAAGAGGTTTTGAGTTGAATTTAGGACATTTTAACAATTTCAGAAATAAGCAAATATCCGAAAAAACTAGGAATTTTCTAAAAACTCTGTAAATGCAAAGTTTTCAATCTAGGTATGTTTTACATTCTCCAAAGTTATCAATGTCATTGGAAACTTGACAGCCGAGCTCCAGACTCCTGAAAAAAGAAAAAAATATATCAAAACTAATCGAGTGTCACCCGACCAGTCACATTTGAGCTCAATTATCTCGGTTCCTATAAAAGATATCAAAAGTCTGTCAACTAATAAAATATTGCTCATATTATGATAAACATTTTATCAATTGACAGGTTCTTAATATCTTGTTTAGGAGCCGAGATAATTGAGCTCAAAGTTGACAATCAAGGGAGCTCTTCTAATGCAGGTTTTCATATTTCCGAATTTCCAGGCGAGTAAAGTCGATGAAAAAATGTCCGGTGCCCAGCTATTTTCAATTATCTCCAACGCGGGAATGGCTGCAATTGTGGAGACAATCGAAAAAATCGAAAGCGGCAAAACTGAAAATCAAAGTGTACGGGTTGCACAAAGACACCTTCTGGACAGTGTTCAAAAGTTTCACGACACTAAACTTTAATTTTTTTTGGAATTAATGAATTGCTCAGTTTTTTGTGTTGTGCTTTATTTAGATTCGGTCATCTGTTTCATTGAAAAAGTATATTATAAAACACATTGCCTTTATCATTGGGCCAATTTTAGAAGTTCCCGAAGACGTCTTCTCGTGACGTCTTCTTCTTCTTCTCCTTCTCTATTCAACATCTT</canonical>
            <polymorphic>AAAACCTCACATTTCAAATAGATAAAATTTCCTACAATCCCGTCTAAAAACCACCTTTCTAGCGCTTTTAGGACGCAGACGACGAGACACTCTGCGTCTCTAACCTCGGGAACTTCAAATGACCATATCTCGATTCCTAGATGAGCTAGGAAAATGGTTTTTGGACAGAATTACATAGTTTGAAACGGATTTTCAGATTATTAAAGAGGTTTTGAGTTGAATTTAGGACATTTTAACAATTTCAGAAATAAGCAAATATCCGAAAAAACTAGGAATTTTCTAAAAACTCTGTAAATGCAAAGTTTTCAATCTAGGTATGTTTTACATTCTCCAAAGTTATCAATGTCATTGGAAACTTGACAGCCGAGCTCCAGACTCCTGAAAAAAGAAAAAAATATATCAAAACTAATCGAGTGTCACCCGACCAGTCACATTTGAGCTCAATTATCTCGGTTCCTATAAAAGATATCAAAAGTCTGTCAACTAATAAAATATTGCTYATATTATGATAAACATTTTATCAATTGACAGGTTCTTAATATCTTGTTTAGGAGCCGAGATAATTGAGCTCAAAGTTGACAATCAAGGGAGCTCTTCTAATGCAGGTTTTCATATTTCCGAATTTCCAGGCGAGTAAAGTCGATGAAAAAATGTCCGGTGCCCAGCTATTTTCAATTATCTCCAACGCGGGAATGGCTGCAATTGTGGAGACAATCGAAAAAATCGAAAGCGGCAAAACTGAAAATCAAAGTGTACGGGTTGCACAAAGACACCTTCTGGACAGTGTTCAAAAGTTTCACGACACTAAACTTTAATTTTTTTTGGAATTAATGAATTGCTCAGTTTTTTGTGTTGTGCTTTATTTAGATTCGGTCATCTGTTTCATTGAAAAAGTATATTATAAAACACATTGCCTTTATCATTGGGCCAATTTTAGAAGTTCCCGAAGACGTCTTCTCGTGACGTCTTCTTCTTCTTCTCCTTCTCTATTCAACATCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGTTGAATTTAGGACATTTT</pcr_primer_p1>
		<pcr_primer_p2>GACTTTACTCGCCTGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>430</pcr_amplicon_size>
		<canonical_amplicon>TTGAGTTGAATTTAGGACATTTTAACAATTTCAGAAATAAGCAAATATCCGAAAAAACTAGGAATTTTCTAAAAACTCTGTAAATGCAAAGTTTTCAATCTAGGTATGTTTTACATTCTCCAAAGTTATCAATGTCATTGGAAACTTGACAGCCGAGCTCCAGACTCCTGAAAAAAGAAAAAAATATATCAAAACTAATCGAGTGTCACCCGACCAGTCACATTTGAGCTCAATTATCTCGGTTCCTATAAAAGATATCAAAAGTCTGTCAACTAATAAAATATTGCTCATATTATGATAAACATTTTATCAATTGACAGGTTCTTAATATCTTGTTTAGGAGCCGAGATAATTGAGCTCAAAGTTGACAATCAAGGGAGCTCTTCTAATGCAGGTTTTCATATTTCCGAATTTCCAGGCGAGTAAAGTC</canonical_amplicon>
		<polymorphic_amplicon>TTGAGTTGAATTTAGGACATTTTAACAATTTCAGAAATAAGCAAATATCCGAAAAAACTAGGAATTTTCTAAAAACTCTGTAAATGCAAAGTTTTCAATCTAGGTATGTTTTACATTCTCCAAAGTTATCAATGTCATTGGAAACTTGACAGCCGAGCTCCAGACTCCTGAAAAAAGAAAAAAATATATCAAAACTAATCGAGTGTCACCCGACCAGTCACATTTGAGCTCAATTATCTCGGTTCCTATAAAAGATATCAAAAGTCTGTCAACTAATAAAATATTGCTYATATTATGATAAACATTTTATCAATTGACAGGTTCTTAATATCTTGTTTAGGAGCCGAGATAATTGAGCTCAAAGTTGACAATCAAGGGAGCTCTTCTAATGCAGGTTTTCATATTTCCGAATTTCCAGGCGAGTAAAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29374</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>245436</contig_pos>
        <strand></strand>
        <context>acattttatc[A/C]attgacaggt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGTCTGTCAACTAATAAAATATTGCTCATATTATGATAAACATTTTATC</left_flank>
        <right_flank>ATTGACAGGTTCTTAATATCTTGTTTAGGAGCCGAGATAATTGAGCTCAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATTTCCTACAATCCCGTCTAAAAACCACCTTTCTAGCGCTTTTAGGACGCAGACGACGAGACACTCTGCGTCTCTAACCTCGGGAACTTCAAATGACCATATCTCGATTCCTAGATGAGCTAGGAAAATGGTTTTTGGACAGAATTACATAGTTTGAAACGGATTTTCAGATTATTAAAGAGGTTTTGAGTTGAATTTAGGACATTTTAACAATTTCAGAAATAAGCAAATATCCGAAAAAACTAGGAATTTTCTAAAAACTCTGTAAATGCAAAGTTTTCAATCTAGGTATGTTTTACATTCTCCAAAGTTATCAATGTCATTGGAAACTTGACAGCCGAGCTCCAGACTCCTGAAAAAAGAAAAAAATATATCAAAACTAATCGAGTGTCACCCGACCAGTCACATTTGAGCTCAATTATCTCGGTTCCTATAAAAGATATCAAAAGTCTGTCAACTAATAAAATATTGCTCATATTATGATAAACATTTTATCAATTGACAGGTTCTTAATATCTTGTTTAGGAGCCGAGATAATTGAGCTCAAAGTTGACAATCAAGGGAGCTCTTCTAATGCAGGTTTTCATATTTCCGAATTTCCAGGCGAGTAAAGTCGATGAAAAAATGTCCGGTGCCCAGCTATTTTCAATTATCTCCAACGCGGGAATGGCTGCAATTGTGGAGACAATCGAAAAAATCGAAAGCGGCAAAACTGAAAATCAAAGTGTACGGGTTGCACAAAGACACCTTCTGGACAGTGTTCAAAAGTTTCACGACACTAAACTTTAATTTTTTTTGGAATTAATGAATTGCTCAGTTTTTTGTGTTGTGCTTTATTTAGATTCGGTCATCTGTTTCATTGAAAAAGTATATTATAAAACACATTGCCTTTATCATTGGGCCAATTTTAGAAGTTCCCGAAGACGTCTTCTCGTGACGTCTTCTTCTTCTTCTCCTTCTCTATTCAACATCTTCTTGCCCTCAGTTGCTCATTAGA</canonical>
            <polymorphic>AAAATTTCCTACAATCCCGTCTAAAAACCACCTTTCTAGCGCTTTTAGGACGCAGACGACGAGACACTCTGCGTCTCTAACCTCGGGAACTTCAAATGACCATATCTCGATTCCTAGATGAGCTAGGAAAATGGTTTTTGGACAGAATTACATAGTTTGAAACGGATTTTCAGATTATTAAAGAGGTTTTGAGTTGAATTTAGGACATTTTAACAATTTCAGAAATAAGCAAATATCCGAAAAAACTAGGAATTTTCTAAAAACTCTGTAAATGCAAAGTTTTCAATCTAGGTATGTTTTACATTCTCCAAAGTTATCAATGTCATTGGAAACTTGACAGCCGAGCTCCAGACTCCTGAAAAAAGAAAAAAATATATCAAAACTAATCGAGTGTCACCCGACCAGTCACATTTGAGCTCAATTATCTCGGTTCCTATAAAAGATATCAAAAGTCTGTCAACTAATAAAATATTGCTCATATTATGATAAACATTTTATCMATTGACAGGTTCTTAATATCTTGTTTAGGAGCCGAGATAATTGAGCTCAAAGTTGACAATCAAGGGAGCTCTTCTAATGCAGGTTTTCATATTTCCGAATTTCCAGGCGAGTAAAGTCGATGAAAAAATGTCCGGTGCCCAGCTATTTTCAATTATCTCCAACGCGGGAATGGCTGCAATTGTGGAGACAATCGAAAAAATCGAAAGCGGCAAAACTGAAAATCAAAGTGTACGGGTTGCACAAAGACACCTTCTGGACAGTGTTCAAAAGTTTCACGACACTAAACTTTAATTTTTTTTGGAATTAATGAATTGCTCAGTTTTTTGTGTTGTGCTTTATTTAGATTCGGTCATCTGTTTCATTGAAAAAGTATATTATAAAACACATTGCCTTTATCATTGGGCCAATTTTAGAAGTTCCCGAAGACGTCTTCTCGTGACGTCTTCTTCTTCTTCTCCTTCTCTATTCAACATCTTCTTGCCCTCAGTTGCTCATTAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>499 323 178</canonical_bands>
                <polymorphic_bands>677 323</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>169 143 113 96 94 80 59 53 51 39 36 27 18 12 8 2</canonical_bands>
                <polymorphic_bands>169 143 119 113 96 94 59 53 51 36 27 18 12 8 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAGTTGAATTTAGGACATTTT</pcr_primer_p1>
		<pcr_primer_p2>GACTTTACTCGCCTGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>430</pcr_amplicon_size>
		<canonical_amplicon>TTGAGTTGAATTTAGGACATTTTAACAATTTCAGAAATAAGCAAATATCCGAAAAAACTAGGAATTTTCTAAAAACTCTGTAAATGCAAAGTTTTCAATCTAGGTATGTTTTACATTCTCCAAAGTTATCAATGTCATTGGAAACTTGACAGCCGAGCTCCAGACTCCTGAAAAAAGAAAAAAATATATCAAAACTAATCGAGTGTCACCCGACCAGTCACATTTGAGCTCAATTATCTCGGTTCCTATAAAAGATATCAAAAGTCTGTCAACTAATAAAATATTGCTCATATTATGATAAACATTTTATCAATTGACAGGTTCTTAATATCTTGTTTAGGAGCCGAGATAATTGAGCTCAAAGTTGACAATCAAGGGAGCTCTTCTAATGCAGGTTTTCATATTTCCGAATTTCCAGGCGAGTAAAGTC</canonical_amplicon>
		<polymorphic_amplicon>TTGAGTTGAATTTAGGACATTTTAACAATTTCAGAAATAAGCAAATATCCGAAAAAACTAGGAATTTTCTAAAAACTCTGTAAATGCAAAGTTTTCAATCTAGGTATGTTTTACATTCTCCAAAGTTATCAATGTCATTGGAAACTTGACAGCCGAGCTCCAGACTCCTGAAAAAAGAAAAAAATATATCAAAACTAATCGAGTGTCACCCGACCAGTCACATTTGAGCTCAATTATCTCGGTTCCTATAAAAGATATCAAAAGTCTGTCAACTAATAAAATATTGCTCATATTATGATAAACATTTTATCMATTGACAGGTTCTTAATATCTTGTTTAGGAGCCGAGATAATTGAGCTCAAAGTTGACAATCAAGGGAGCTCTTCTAATGCAGGTTTTCATATTTCCGAATTTCCAGGCGAGTAAAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29375</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>247641</contig_pos>
        <strand>+</strand>
        <context>TTTTATTATA[G/T]TTTTTTTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACTTCAGTTCTGAAATTCGGATCACGGTTATTCGGCCCCTTTTATTATA</left_flank>
        <right_flank>TTTTTTTCAATCCATCTGCGATTTAAGAATTGTTTTTCTTCCTGAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTCAATTCCTGGATGATGGTTTAGACTGAAAATGATGGTTTAGACTGAAAATAATAAGAAATTAAGTGACTGATCTGGGATCATGGAGCCAGGAGCATGGAGCCAGGAGCATGGAGCCAGGAGCATGGAGTCAGGAGCATGGAGCCAGGAGCAAGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCCAGATGGAGCCAAGCGTATCTATGACGCGATGTTCAAGCTAACTATCAATTCCTGGAACTGGTTCAGACTGAAATTAAGAAAAGAACGAAGTTAAATTCTTGCCATTTCTTTTCGAAATAAGCTTTATTTGTATAAGTTACACTTAAAAGTTCTGATATTCGGAGATTCTGCAATTCTGAATTTTAGATCCTTAGATTCTGACATTTTAAGATTCTGAGATTCTGAGATTTTGAAAAAACTTCAGTTCTGAAATTCGGATCACGGTTATTCGGCCCCTTTTATTATATTTTTTTTCAATCCATCTGCGATTTAAGAATTGTTTTTCTTCCTGAAAAAAGTTTCATAAACCAACACTTCCTCCTTGACATCATTCTGAAAATGTTTCCAATTTAAACCCTCTTCAATTCCCAGAATACAACATCCTGAAATCAATTTTTTCAGATTTTTTTTCAGCTACACAACAAAACAAAAAATCACCTGCGAATATTTCTCCCAAGTCTTCTATGTCTTAAAATAGCCAAGAAAAAAATTTCAATCCCCAAAACTTTTTTACCACGATGATTAAAACTTCAACCAACGAATATTGGTCTAAAAACAAAAATTTCGCTCTTGTTTTGTTTTTGATGGAGGAGGAACAACAAAAAAACACTGAATATAAAGTAGTTACGTACATTCATAGAGAGAGTTTTGAATATTTTAAAATGTAAGATCATATCTAGTCTGACCCCTTTTCATTAGACTAAAATATCCCGAAGAGAATTTCTTATGAATTGTAGCCGTGTGAAAA</canonical>
            <polymorphic>ATTTTTTCAATTCCTGGATGATGGTTTAGACTGAAAATGATGGTTTAGACTGAAAATAATAAGAAATTAAGTGACTGATCTGGGATCATGGAGCCAGGAGCATGGAGCCAGGAGCATGGAGCCAGGAGCATGGAGTCAGGAGCATGGAGCCAGGAGCAAGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCCAGATGGAGCCAAGCGTATCTATGACGCGATGTTCAAGCTAACTATCAATTCCTGGAACTGGTTCAGACTGAAATTAAGAAAAGAACGAAGTTAAATTCTTGCCATTTCTTTTCGAAATAAGCTTTATTTGTATAAGTTACACTTAAAAGTTCTGATATTCGGAGATTCTGCAATTCTGAATTTTAGATCCTTAGATTCTGACATTTTAAGATTCTGAGATTCTGAGATTTTGAAAAAACTTCAGTTCTGAAATTCGGATCACGGTTATTCGGCCCCTTTTATTATAKTTTTTTTCAATCCATCTGCGATTTAAGAATTGTTTTTCTTCCTGAAAAAAGTTTCATAAACCAACACTTCCTCCTTGACATCATTCTGAAAATGTTTCCAATTTAAACCCTCTTCAATTCCCAGAATACAACATCCTGAAATCAATTTTTTCAGATTTTTTTTCAGCTACACAACAAAACAAAAAATCACCTGCGAATATTTCTCCCAAGTCTTCTATGTCTTAAAATAGCCAAGAAAAAAATTTCAATCCCCAAAACTTTTTTACCACGATGATTAAAACTTCAACCAACGAATATTGGTCTAAAAACAAAAATTTCGCTCTTGTTTTGTTTTTGATGGAGGAGGAACAACAAAAAAACACTGAATATAAAGTAGTTACGTACATTCATAGAGAGAGTTTTGAATATTTTAAAATGTAAGATCATATCTAGTCTGACCCCTTTTCATTAGACTAAAATATCCCGAAGAGAATTTCTTATGAATTGTAGCCGTGTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATTTCTTTTCGAAATAAGC</pcr_primer_p1>
		<pcr_primer_p2>ATGTCAAGGAGGAAGTGTTG</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>CCATTTCTTTTCGAAATAAGCTTTATTTGTATAAGTTACACTTAAAAGTTCTGATATTCGGAGATTCTGCAATTCTGAATTTTAGATCCTTAGATTCTGACATTTTAAGATTCTGAGATTCTGAGATTTTGAAAAAACTTCAGTTCTGAAATTCGGATCACGGTTATTCGGCCCCTTTTATTATATTTTTTTTCAATCCATCTGCGATTTAAGAATTGTTTTTCTTCCTGAAAAAAGTTTCATAAACCAACACTTCCTCCTTGACAT</canonical_amplicon>
		<polymorphic_amplicon>CCATTTCTTTTCGAAATAAGCTTTATTTGTATAAGTTACACTTAAAAGTTCTGATATTCGGAGATTCTGCAATTCTGAATTTTAGATCCTTAGATTCTGACATTTTAAGATTCTGAGATTCTGAGATTTTGAAAAAACTTCAGTTCTGAAATTCGGATCACGGTTATTCGGCCCCTTTTATTATAKTTTTTTTCAATCCATCTGCGATTTAAGAATTGTTTTTCTTCCTGAAAAAAGTTTCATAAACCAACACTTCCTCCTTGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29376</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>247797</contig_pos>
        <strand>+</strand>
        <context>TTTTTTCAGA[C/T]TTTTTTTCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACCCTCTTCAATTCCCAGAATACAACATCCTGAAATCAATTTTTTCAGA</left_flank>
        <right_flank>TTTTTTTCAGCTACACAACAAAACAAAAAATCACCTGCGAATATTTCTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCCAGATGGAGCCAAGCGTATCTATGACGCGATGTTCAAGCTAACTATCAATTCCTGGAACTGGTTCAGACTGAAATTAAGAAAAGAACGAAGTTAAATTCTTGCCATTTCTTTTCGAAATAAGCTTTATTTGTATAAGTTACACTTAAAAGTTCTGATATTCGGAGATTCTGCAATTCTGAATTTTAGATCCTTAGATTCTGACATTTTAAGATTCTGAGATTCTGAGATTTTGAAAAAACTTCAGTTCTGAAATTCGGATCACGGTTATTCGGCCCCTTTTATTATATTTTTTTTCAATCCATCTGCGATTTAAGAATTGTTTTTCTTCCTGAAAAAAGTTTCATAAACCAACACTTCCTCCTTGACATCATTCTGAAAATGTTTCCAATTTAAACCCTCTTCAATTCCCAGAATACAACATCCTGAAATCAATTTTTTCAGATTTTTTTTCAGCTACACAACAAAACAAAAAATCACCTGCGAATATTTCTCCCAAGTCTTCTATGTCTTAAAATAGCCAAGAAAAAAATTTCAATCCCCAAAACTTTTTTACCACGATGATTAAAACTTCAACCAACGAATATTGGTCTAAAAACAAAAATTTCGCTCTTGTTTTGTTTTTGATGGAGGAGGAACAACAAAAAAACACTGAATATAAAGTAGTTACGTACATTCATAGAGAGAGTTTTGAATATTTTAAAATGTAAGATCATATCTAGTCTGACCCCTTTTCATTAGACTAAAATATCCCGAAGAGAATTTCTTATGAATTGTAGCCGTGTGAAAAAAGAGCCGCAAGGCTCCAATGGGTTGGAAAATGGTCAAAAATCATAGAAAGCCATAAGGATTAACTTTTTGAACTTTTTGAAGTTTCTAGATTTGATGAGTTATCTCGTTTGATCAGGTCTCATTTTTGACTGATAAAATTGAACTTTTTATGTTT</canonical>
            <polymorphic>CAAGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCTGGAGCCAGATGGAGCCAAGCGTATCTATGACGCGATGTTCAAGCTAACTATCAATTCCTGGAACTGGTTCAGACTGAAATTAAGAAAAGAACGAAGTTAAATTCTTGCCATTTCTTTTCGAAATAAGCTTTATTTGTATAAGTTACACTTAAAAGTTCTGATATTCGGAGATTCTGCAATTCTGAATTTTAGATCCTTAGATTCTGACATTTTAAGATTCTGAGATTCTGAGATTTTGAAAAAACTTCAGTTCTGAAATTCGGATCACGGTTATTCGGCCCCTTTTATTATATTTTTTTTCAATCCATCTGCGATTTAAGAATTGTTTTTCTTCCTGAAAAAAGTTTCATAAACCAACACTTCCTCCTTGACATCATTCTGAAAATGTTTCCAATTTAAACCCTCTTCAATTCCCAGAATACAACATCCTGAAATCAATTTTTTCAGAYTTTTTTTCAGCTACACAACAAAACAAAAAATCACCTGCGAATATTTCTCCCAAGTCTTCTATGTCTTAAAATAGCCAAGAAAAAAATTTCAATCCCCAAAACTTTTTTACCACGATGATTAAAACTTCAACCAACGAATATTGGTCTAAAAACAAAAATTTCGCTCTTGTTTTGTTTTTGATGGAGGAGGAACAACAAAAAAACACTGAATATAAAGTAGTTACGTACATTCATAGAGAGAGTTTTGAATATTTTAAAATGTAAGATCATATCTAGTCTGACCCCTTTTCATTAGACTAAAATATCCCGAAGAGAATTTCTTATGAATTGTAGCCGTGTGAAAAAAGAGCCGCAAGGCTCCAATGGGTTGGAAAATGGTCAAAAATCATAGAAAGCCATAAGGATTAACTTTTTGAACTTTTTGAAGTTTCTAGATTTGATGAGTTATCTCGTTTGATCAGGTCTCATTTTTGACTGATAAAATTGAACTTTTTATGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGAAAATGTTTCCAATTTA</pcr_primer_p1>
		<pcr_primer_p2>AAGAGCGAAATTTTTGTTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGAAAATGTTTCCAATTTAAACCCTCTTCAATTCCCAGAATACAACATCCTGAAATCAATTTTTTCAGATTTTTTTTCAGCTACACAACAAAACAAAAAATCACCTGCGAATATTTCTCCCAAGTCTTCTATGTCTTAAAATAGCCAAGAAAAAAATTTCAATCCCCAAAACTTTTTTACCACGATGATTAAAACTTCAACCAACGAATATTGGTCTAAAAACAAAAATTTCGCTCTT</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGAAAATGTTTCCAATTTAAACCCTCTTCAATTCCCAGAATACAACATCCTGAAATCAATTTTTTCAGAYTTTTTTTCAGCTACACAACAAAACAAAAAATCACCTGCGAATATTTCTCCCAAGTCTTCTATGTCTTAAAATAGCCAAGAAAAAAATTTCAATCCCCAAAACTTTTTTACCACGATGATTAAAACTTCAACCAACGAATATTGGTCTAAAAACAAAAATTTCGCTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29377</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>256452</contig_pos>
        <strand></strand>
        <context>ctgtattaag[A/T]aggaccttta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACCACTTTTTTAGGACTACAAAATTAACTACCTTAAAACCTGTATTAAG</left_flank>
        <right_flank>AGGACCTTTAACTTTTAACTTTGAATACTTATATCTCCTTTCCTGTAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATATCAAACATTTTTCAACTGATAAAATGTTTTTGATATTGTGACAAACAATTTATTAGTAGACAACTTTTTCATATCTTTGACAGGAACCGAGATAAATTGGCTTAACATTGAAAGTTAGGGTAGCCTTCTATTACAGGTTTTACGTTAGCCCTGAAAAGGTGGTCTGGAATTTTTCAATTCGTTCGCAAATTTCAGGTTTTACTAAACAAAATTAGAGCTTAATTTTTGAAATTTACCACTTTTTGTAGAAATTCAACTAGGCGAGATAGGAAGTTTTTTTTTAATATCATTGCAATGTTAATTTTGGCATTTTCGGCATTTTTATGGTTACAAACCACCTATCTCATCAGAATGAAATTTGGTGAAAAAGTTGTCAACTACAAAATGGAAGCTCTAATTTTGTTTAGTATACTCTGAAATTTTCAAACCAATTGAAAAATTTTGGACCACTTTTTTAGGACTACAAAATTAACTACCTTAAAACCTGTATTAAGAAGGACCTTTAACTTTTAACTTTGAATACTTATATCTCCTTTCCTGTAAAAGATATCAAAAAATGGTTTACTGATAAAATGTTTATCGTAATATCACAAACATTTTGTTAGTGGACTATGCTTCGATATCTTTCACAGGGCACGAGATAAAGTGACTCAAAGTTGAGGGTTTGGGTGACGTTCCATTTTTTGGCACCTATTTTGAATCTTGACAATTCCAGACACCCCACCTCCCTCCCTAAAATCGTGTTTTGCTTTCTTTTTTTATTCCGAGACCTCCCACATCCCAAGTTGTAACAAAAACATCTATATTACCACTGACCAAAGGATTCTATCTAGTCTAGACTTTCAAGATTATTCTGCTCCTTAAATCTGTCTTTAATGTATAGTAGGAGTACAAGGGTAAATAACAACTACAATATACTTCACTCGCTATTGTTGATATTCTGATAAATATTACTCATATCTCTGAATTGGTCATTTCCGTTTTTTATTCATTGA</canonical>
            <polymorphic>ATATATCAAACATTTTTCAACTGATAAAATGTTTTTGATATTGTGACAAACAATTTATTAGTAGACAACTTTTTCATATCTTTGACAGGAACCGAGATAAATTGGCTTAACATTGAAAGTTAGGGTAGCCTTCTATTACAGGTTTTACGTTAGCCCTGAAAAGGTGGTCTGGAATTTTTCAATTCGTTCGCAAATTTCAGGTTTTACTAAACAAAATTAGAGCTTAATTTTTGAAATTTACCACTTTTTGTAGAAATTCAACTAGGCGAGATAGGAAGTTTTTTTTTAATATCATTGCAATGTTAATTTTGGCATTTTCGGCATTTTTATGGTTACAAACCACCTATCTCATCAGAATGAAATTTGGTGAAAAAGTTGTCAACTACAAAATGGAAGCTCTAATTTTGTTTAGTATACTCTGAAATTTTCAAACCAATTGAAAAATTTTGGACCACTTTTTTAGGACTACAAAATTAACTACCTTAAAACCTGTATTAAGWAGGACCTTTAACTTTTAACTTTGAATACTTATATCTCCTTTCCTGTAAAAGATATCAAAAAATGGTTTACTGATAAAATGTTTATCGTAATATCACAAACATTTTGTTAGTGGACTATGCTTCGATATCTTTCACAGGGCACGAGATAAAGTGACTCAAAGTTGAGGGTTTGGGTGACGTTCCATTTTTTGGCACCTATTTTGAATCTTGACAATTCCAGACACCCCACCTCCCTCCCTAAAATCGTGTTTTGCTTTCTTTTTTTATTCCGAGACCTCCCACATCCCAAGTTGTAACAAAAACATCTATATTACCACTGACCAAAGGATTCTATCTAGTCTAGACTTTCAAGATTATTCTGCTCCTTAAATCTGTCTTTAATGTATAGTAGGAGTACAAGGGTAAATAACAACTACAATATACTTCACTCGCTATTGTTGATATTCTGATAAATATTACTCATATCTCTGAATTGGTCATTTCCGTTTTTTATTCATTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTGTAAAGTACCATAAAACCTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTCAAAATAGGTGCCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>827</pcr_amplicon_size>
		<canonical_amplicon>GAAGGACCTTTAACTTTTAACTTTGAATACTTATATCTCCTTTCCTGTAAAAGATATCAAAAAATGGTTTACTGATAAAATGTTTATCGTAATATCACAAACATTTTGTTAGTGGACTATGCTTCGATATCTTTCACAGGGCACGAGATAAAGTGACTCAAAGTTGAGGGTTTGGGTGACGTTCCATTTTTTGGCACCTATTTTGAAT</canonical_amplicon>
		<polymorphic_amplicon>GWAGGACCTTTAACTTTTAACTTTGAATACTTATATCTCCTTTCCTGTAAAAGATATCAAAAAATGGTTTACTGATAAAATGTTTATCGTAATATCACAAACATTTTGTTAGTGGACTATGCTTCGATATCTTTCACAGGGCACGAGATAAAGTGACTCAAAGTTGAGGGTTTGGGTGACGTTCCATTTTTTGGCACCTATTTTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29378</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>256519</contig_pos>
        <strand></strand>
        <context>aaaaaatggt[T/C]tactgataaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AACTTTGAATACTTATATCTCCTTTCCTGTAAAAGATATCAAAAAATGGT</left_flank>
        <right_flank>TACTGATAAAATGTTTATCGTAATATCACAAACATTTTGTTAGTGGACTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTTTCATATCTTTGACAGGAACCGAGATAAATTGGCTTAACATTGAAAGTTAGGGTAGCCTTCTATTACAGGTTTTACGTTAGCCCTGAAAAGGTGGTCTGGAATTTTTCAATTCGTTCGCAAATTTCAGGTTTTACTAAACAAAATTAGAGCTTAATTTTTGAAATTTACCACTTTTTGTAGAAATTCAACTAGGCGAGATAGGAAGTTTTTTTTTAATATCATTGCAATGTTAATTTTGGCATTTTCGGCATTTTTATGGTTACAAACCACCTATCTCATCAGAATGAAATTTGGTGAAAAAGTTGTCAACTACAAAATGGAAGCTCTAATTTTGTTTAGTATACTCTGAAATTTTCAAACCAATTGAAAAATTTTGGACCACTTTTTTAGGACTACAAAATTAACTACCTTAAAACCTGTATTAAGAAGGACCTTTAACTTTTAACTTTGAATACTTATATCTCCTTTCCTGTAAAAGATATCAAAAAATGGTTTACTGATAAAATGTTTATCGTAATATCACAAACATTTTGTTAGTGGACTATGCTTCGATATCTTTCACAGGGCACGAGATAAAGTGACTCAAAGTTGAGGGTTTGGGTGACGTTCCATTTTTTGGCACCTATTTTGAATCTTGACAATTCCAGACACCCCACCTCCCTCCCTAAAATCGTGTTTTGCTTTCTTTTTTTATTCCGAGACCTCCCACATCCCAAGTTGTAACAAAAACATCTATATTACCACTGACCAAAGGATTCTATCTAGTCTAGACTTTCAAGATTATTCTGCTCCTTAAATCTGTCTTTAATGTATAGTAGGAGTACAAGGGTAAATAACAACTACAATATACTTCACTCGCTATTGTTGATATTCTGATAAATATTACTCATATCTCTGAATTGGTCATTTCCGTTTTTTATTCATTGAAAACCTTATTTCCGGAGAAAGGCGGGCCATAAACTTGCCAGCCCAAAATTTTCTTCCTGGATCTTTT</canonical>
            <polymorphic>ACTTTTTCATATCTTTGACAGGAACCGAGATAAATTGGCTTAACATTGAAAGTTAGGGTAGCCTTCTATTACAGGTTTTACGTTAGCCCTGAAAAGGTGGTCTGGAATTTTTCAATTCGTTCGCAAATTTCAGGTTTTACTAAACAAAATTAGAGCTTAATTTTTGAAATTTACCACTTTTTGTAGAAATTCAACTAGGCGAGATAGGAAGTTTTTTTTTAATATCATTGCAATGTTAATTTTGGCATTTTCGGCATTTTTATGGTTACAAACCACCTATCTCATCAGAATGAAATTTGGTGAAAAAGTTGTCAACTACAAAATGGAAGCTCTAATTTTGTTTAGTATACTCTGAAATTTTCAAACCAATTGAAAAATTTTGGACCACTTTTTTAGGACTACAAAATTAACTACCTTAAAACCTGTATTAAGAAGGACCTTTAACTTTTAACTTTGAATACTTATATCTCCTTTCCTGTAAAAGATATCAAAAAATGGTYTACTGATAAAATGTTTATCGTAATATCACAAACATTTTGTTAGTGGACTATGCTTCGATATCTTTCACAGGGCACGAGATAAAGTGACTCAAAGTTGAGGGTTTGGGTGACGTTCCATTTTTTGGCACCTATTTTGAATCTTGACAATTCCAGACACCCCACCTCCCTCCCTAAAATCGTGTTTTGCTTTCTTTTTTTATTCCGAGACCTCCCACATCCCAAGTTGTAACAAAAACATCTATATTACCACTGACCAAAGGATTCTATCTAGTCTAGACTTTCAAGATTATTCTGCTCCTTAAATCTGTCTTTAATGTATAGTAGGAGTACAAGGGTAAATAACAACTACAATATACTTCACTCGCTATTGTTGATATTCTGATAAATATTACTCATATCTCTGAATTGGTCATTTCCGTTTTTTATTCATTGAAAACCTTATTTCCGGAGAAAGGCGGGCCATAAACTTGCCAGCCCAAAATTTTCTTCCTGGATCTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTGTAAAGTACCATAAAACCTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTCAAAATAGGTGCCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>827</pcr_amplicon_size>
		<canonical_amplicon>TTTACTGATAAAATGTTTATCGTAATATCACAAACATTTTGTTAGTGGACTATGCTTCGATATCTTTCACAGGGCACGAGATAAAGTGACTCAAAGTTGAGGGTTTGGGTGACGTTCCATTTTTTGGCACCTATTTTGAAT</canonical_amplicon>
		<polymorphic_amplicon>TYTACTGATAAAATGTTTATCGTAATATCACAAACATTTTGTTAGTGGACTATGCTTCGATATCTTTCACAGGGCACGAGATAAAGTGACTCAAAGTTGAGGGTTTGGGTGACGTTCCATTTTTTGGCACCTATTTTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29379</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>256575</contig_pos>
        <strand></strand>
        <context>gactatgctt[C/T]gatatctttc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAAAATGTTTATCGTAATATCACAAACATTTTGTTAGTGGACTATGCTT</left_flank>
        <right_flank>GATATCTTTCACAGGGCACGAGATAAAGTGACTCAAAGTTGAGGGTTTGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTAGCCTTCTATTACAGGTTTTACGTTAGCCCTGAAAAGGTGGTCTGGAATTTTTCAATTCGTTCGCAAATTTCAGGTTTTACTAAACAAAATTAGAGCTTAATTTTTGAAATTTACCACTTTTTGTAGAAATTCAACTAGGCGAGATAGGAAGTTTTTTTTTAATATCATTGCAATGTTAATTTTGGCATTTTCGGCATTTTTATGGTTACAAACCACCTATCTCATCAGAATGAAATTTGGTGAAAAAGTTGTCAACTACAAAATGGAAGCTCTAATTTTGTTTAGTATACTCTGAAATTTTCAAACCAATTGAAAAATTTTGGACCACTTTTTTAGGACTACAAAATTAACTACCTTAAAACCTGTATTAAGAAGGACCTTTAACTTTTAACTTTGAATACTTATATCTCCTTTCCTGTAAAAGATATCAAAAAATGGTTTACTGATAAAATGTTTATCGTAATATCACAAACATTTTGTTAGTGGACTATGCTTCGATATCTTTCACAGGGCACGAGATAAAGTGACTCAAAGTTGAGGGTTTGGGTGACGTTCCATTTTTTGGCACCTATTTTGAATCTTGACAATTCCAGACACCCCACCTCCCTCCCTAAAATCGTGTTTTGCTTTCTTTTTTTATTCCGAGACCTCCCACATCCCAAGTTGTAACAAAAACATCTATATTACCACTGACCAAAGGATTCTATCTAGTCTAGACTTTCAAGATTATTCTGCTCCTTAAATCTGTCTTTAATGTATAGTAGGAGTACAAGGGTAAATAACAACTACAATATACTTCACTCGCTATTGTTGATATTCTGATAAATATTACTCATATCTCTGAATTGGTCATTTCCGTTTTTTATTCATTGAAAACCTTATTTCCGGAGAAAGGCGGGCCATAAACTTGCCAGCCCAAAATTTTCTTCCTGGATCTTTTTTCTGAACTTTACATCATCAAAATCCCACTTTCCTTTTGTTTGAGCCTAATGTCAG</canonical>
            <polymorphic>GGTAGCCTTCTATTACAGGTTTTACGTTAGCCCTGAAAAGGTGGTCTGGAATTTTTCAATTCGTTCGCAAATTTCAGGTTTTACTAAACAAAATTAGAGCTTAATTTTTGAAATTTACCACTTTTTGTAGAAATTCAACTAGGCGAGATAGGAAGTTTTTTTTTAATATCATTGCAATGTTAATTTTGGCATTTTCGGCATTTTTATGGTTACAAACCACCTATCTCATCAGAATGAAATTTGGTGAAAAAGTTGTCAACTACAAAATGGAAGCTCTAATTTTGTTTAGTATACTCTGAAATTTTCAAACCAATTGAAAAATTTTGGACCACTTTTTTAGGACTACAAAATTAACTACCTTAAAACCTGTATTAAGAAGGACCTTTAACTTTTAACTTTGAATACTTATATCTCCTTTCCTGTAAAAGATATCAAAAAATGGTTTACTGATAAAATGTTTATCGTAATATCACAAACATTTTGTTAGTGGACTATGCTTYGATATCTTTCACAGGGCACGAGATAAAGTGACTCAAAGTTGAGGGTTTGGGTGACGTTCCATTTTTTGGCACCTATTTTGAATCTTGACAATTCCAGACACCCCACCTCCCTCCCTAAAATCGTGTTTTGCTTTCTTTTTTTATTCCGAGACCTCCCACATCCCAAGTTGTAACAAAAACATCTATATTACCACTGACCAAAGGATTCTATCTAGTCTAGACTTTCAAGATTATTCTGCTCCTTAAATCTGTCTTTAATGTATAGTAGGAGTACAAGGGTAAATAACAACTACAATATACTTCACTCGCTATTGTTGATATTCTGATAAATATTACTCATATCTCTGAATTGGTCATTTCCGTTTTTTATTCATTGAAAACCTTATTTCCGGAGAAAGGCGGGCCATAAACTTGCCAGCCCAAAATTTTCTTCCTGGATCTTTTTTCTGAACTTTACATCATCAAAATCCCACTTTCCTTTTGTTTGAGCCTAATGTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTGTAAAGTACCATAAAACCTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTCAAAATAGGTGCCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>827</pcr_amplicon_size>
		<canonical_amplicon>TCGATATCTTTCACAGGGCACGAGATAAAGTGACTCAAAGTTGAGGGTTTGGGTGACGTTCCATTTTTTGGCACCTATTTTGAAT</canonical_amplicon>
		<polymorphic_amplicon>TYGATATCTTTCACAGGGCACGAGATAAAGTGACTCAAAGTTGAGGGTTTGGGTGACGTTCCATTTTTTGGCACCTATTTTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29380</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>256629</contig_pos>
        <strand></strand>
        <context>ggtttgggtg[A/G]cgttccattT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCTTTCACAGGGCACGAGATAAAGTGACTCAAAGTTGAGGGTTTGGGTG</left_flank>
        <right_flank>CGTTCCATTTTTTGGCACCTATTTTGAATCTTGACAATTCCAGACACCCC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAATTCGTTCGCAAATTTCAGGTTTTACTAAACAAAATTAGAGCTTAATTTTTGAAATTTACCACTTTTTGTAGAAATTCAACTAGGCGAGATAGGAAGTTTTTTTTTAATATCATTGCAATGTTAATTTTGGCATTTTCGGCATTTTTATGGTTACAAACCACCTATCTCATCAGAATGAAATTTGGTGAAAAAGTTGTCAACTACAAAATGGAAGCTCTAATTTTGTTTAGTATACTCTGAAATTTTCAAACCAATTGAAAAATTTTGGACCACTTTTTTAGGACTACAAAATTAACTACCTTAAAACCTGTATTAAGAAGGACCTTTAACTTTTAACTTTGAATACTTATATCTCCTTTCCTGTAAAAGATATCAAAAAATGGTTTACTGATAAAATGTTTATCGTAATATCACAAACATTTTGTTAGTGGACTATGCTTCGATATCTTTCACAGGGCACGAGATAAAGTGACTCAAAGTTGAGGGTTTGGGTGACGTTCCATTTTTTGGCACCTATTTTGAATCTTGACAATTCCAGACACCCCACCTCCCTCCCTAAAATCGTGTTTTGCTTTCTTTTTTTATTCCGAGACCTCCCACATCCCAAGTTGTAACAAAAACATCTATATTACCACTGACCAAAGGATTCTATCTAGTCTAGACTTTCAAGATTATTCTGCTCCTTAAATCTGTCTTTAATGTATAGTAGGAGTACAAGGGTAAATAACAACTACAATATACTTCACTCGCTATTGTTGATATTCTGATAAATATTACTCATATCTCTGAATTGGTCATTTCCGTTTTTTATTCATTGAAAACCTTATTTCCGGAGAAAGGCGGGCCATAAACTTGCCAGCCCAAAATTTTCTTCCTGGATCTTTTTTCTGAACTTTACATCATCAAAATCCCACTTTCCTTTTGTTTGAGCCTAATGTCAGAAGTCGAAAAAAAAGAGGCAACTTGTGTTTCAAGGCAAATTAAGTGGACCAAAA</canonical>
            <polymorphic>TTCAATTCGTTCGCAAATTTCAGGTTTTACTAAACAAAATTAGAGCTTAATTTTTGAAATTTACCACTTTTTGTAGAAATTCAACTAGGCGAGATAGGAAGTTTTTTTTTAATATCATTGCAATGTTAATTTTGGCATTTTCGGCATTTTTATGGTTACAAACCACCTATCTCATCAGAATGAAATTTGGTGAAAAAGTTGTCAACTACAAAATGGAAGCTCTAATTTTGTTTAGTATACTCTGAAATTTTCAAACCAATTGAAAAATTTTGGACCACTTTTTTAGGACTACAAAATTAACTACCTTAAAACCTGTATTAAGAAGGACCTTTAACTTTTAACTTTGAATACTTATATCTCCTTTCCTGTAAAAGATATCAAAAAATGGTTTACTGATAAAATGTTTATCGTAATATCACAAACATTTTGTTAGTGGACTATGCTTCGATATCTTTCACAGGGCACGAGATAAAGTGACTCAAAGTTGAGGGTTTGGGTGRCGTTCCATTTTTTGGCACCTATTTTGAATCTTGACAATTCCAGACACCCCACCTCCCTCCCTAAAATCGTGTTTTGCTTTCTTTTTTTATTCCGAGACCTCCCACATCCCAAGTTGTAACAAAAACATCTATATTACCACTGACCAAAGGATTCTATCTAGTCTAGACTTTCAAGATTATTCTGCTCCTTAAATCTGTCTTTAATGTATAGTAGGAGTACAAGGGTAAATAACAACTACAATATACTTCACTCGCTATTGTTGATATTCTGATAAATATTACTCATATCTCTGAATTGGTCATTTCCGTTTTTTATTCATTGAAAACCTTATTTCCGGAGAAAGGCGGGCCATAAACTTGCCAGCCCAAAATTTTCTTCCTGGATCTTTTTTCTGAACTTTACATCATCAAAATCCCACTTTCCTTTTGTTTGAGCCTAATGTCAGAAGTCGAAAAAAAAGAGGCAACTTGTGTTTCAAGGCAAATTAAGTGGACCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>385 319 154 119 23</canonical_bands>
                <polymorphic_bands>385 319 154 142</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>504 473 23</canonical_bands>
                <polymorphic_bands>527 473</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAGTACCATAAAACCTGTAATTTT</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGAAAGCAAAACACGAT</pcr_primer_p2>
		<pcr_amplicon_size>879</pcr_amplicon_size>
		<canonical_amplicon>GACGTTCCATTTTTTGGCACCTATTTTGAATCTTGACAATTCCAGACACCCCACCTCCCTCCCTAAAATCGTGTTTTGCTTTCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GRCGTTCCATTTTTTGGCACCTATTTTGAATCTTGACAATTCCAGACACCCCACCTCCCTCCCTAAAATCGTGTTTTGCTTTCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29381</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>259206</contig_pos>
        <strand>+</strand>
        <context>CTATTGGAGA[G/T]GKGtgttaga</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGA</left_flank>
        <right_flank>GTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCATCCATACGTTCTAACGTTTGTGTGTAAGGTTAGTAGGCTTTATATGTATCAATGGAAATTGAATTGGGGACAAGAAAGAAACCCTCCCCACACACACACACAAAAACATTCATTAGCTAGATGAATAGGTTTTGCGGGGCGCGGCGGGGATACAAAGAAGGAAACCCAAAAGGAAGTGCGATATATGGAAAATAGAGGACCCAGAAGAAAAGTGTCCAGTGATGTTTGAGTGGCGAGAAAAGTTGAGAGTGACGTATTCCGCGCTTGACATATGAATCGGAGATAAGAGGGAGAGGGAGATAAGAATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGT</canonical>
            <polymorphic>AAATCATCCATACGTTCTAACGTTTGTGTGTAAGGTTAGTAGGCTTTATATGTATCAATGGAAATTGAATTGGGGACAAGAAAGAAACCCTCCCCACACACACACACAAAAACATTCATTAGCTAGATGAATAGGTTTTGCGGGGCGCGGCGGGGATACAAAGAAGGAAACCCAAAAGGAAGTGCGATATATGGAAAATAGAGGACCCAGAAGAAAAGTGTCCAGTGATGTTTGAGTGGCGAGAAAAGTTGAGAGTGACGTATTCCGCGCTTGACATATGAATCGGAGATAAGAGGGAGAGGGAGATAAGAATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGAKGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACAGCTTTGGCTAGAAGA</pcr_primer_p1>
		<pcr_primer_p2>TGCTCTGTTTCATGAGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>741</pcr_amplicon_size>
		<canonical_amplicon>CAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTT</canonical_amplicon>
		<polymorphic_amplicon>CAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGAKGTGTGTTAGAAATGATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29382</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>259208</contig_pos>
        <strand>+</strand>
        <context>ATTGGAGAKG[G/T]Gtgttagaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATG</left_flank>
        <right_flank>GTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGAT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCATCCATACGTTCTAACGTTTGTGTGTAAGGTTAGTAGGCTTTATATGTATCAATGGAAATTGAATTGGGGACAAGAAAGAAACCCTCCCCACACACACACACAAAAACATTCATTAGCTAGATGAATAGGTTTTGCGGGGCGCGGCGGGGATACAAAGAAGGAAACCCAAAAGGAAGTGCGATATATGGAAAATAGAGGACCCAGAAGAAAAGTGTCCAGTGATGTTTGAGTGGCGAGAAAAGTTGAGAGTGACGTATTCCGCGCTTGACATATGAATCGGAGATAAGAGGGAGAGGGAGATAAGAATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGG</canonical>
            <polymorphic>ATCATCCATACGTTCTAACGTTTGTGTGTAAGGTTAGTAGGCTTTATATGTATCAATGGAAATTGAATTGGGGACAAGAAAGAAACCCTCCCCACACACACACACAAAAACATTCATTAGCTAGATGAATAGGTTTTGCGGGGCGCGGCGGGGATACAAAGAAGGAAACCCAAAAGGAAGTGCGATATATGGAAAATAGAGGACCCAGAAGAAAAGTGTCCAGTGATGTTTGAGTGGCGAGAAAAGTTGAGAGTGACGTATTCCGCGCTTGACATATGAATCGGAGATAAGAGGGAGAGGGAGATAAGAATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGKGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>388 108 83 78 70 66 59 36 27 26 19 11 7 7 2 2 2 2 2 2 2 1</canonical_bands>
                <polymorphic_bands>388 108 85 78 70 66 59 36 27 26 19 11 7 7 2 2 2 2 2 2 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACAGCTTTGGCTAGAAGA</pcr_primer_p1>
		<pcr_primer_p2>TGCTCTGTTTCATGAGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>741</pcr_amplicon_size>
		<canonical_amplicon>CAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTT</canonical_amplicon>
		<polymorphic_amplicon>CAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGKGTGTTAGAAATGATCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29383</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>259354</contig_pos>
        <strand></strand>
        <context>gaattttcga[A/C]atttctgaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGA</left_flank>
        <right_flank>ATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCGGGGATACAAAGAAGGAAACCCAAAAGGAAGTGCGATATATGGAAAATAGAGGACCCAGAAGAAAAGTGTCCAGTGATGTTTGAGTGGCGAGAAAAGTTGAGAGTGACGTATTCCGCGCTTGACATATGAATCGGAGATAAGAGGGAGAGGGAGATAAGAATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGAT</canonical>
            <polymorphic>GGCGGGGATACAAAGAAGGAAACCCAAAAGGAAGTGCGATATATGGAAAATAGAGGACCCAGAAGAAAAGTGTCCAGTGATGTTTGAGTGGCGAGAAAAGTTGAGAGTGACGTATTCCGCGCTTGACATATGAATCGGAGATAAGAGGGAGAGGGAGATAAGAATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAMATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>426 192 58 50 34 25 17 16 16 16 16 9 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7</canonical_bands>
                <polymorphic_bands>426 192 58 50 34 25 17 17 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>415 268 236 81</canonical_bands>
                <polymorphic_bands>415 317 268</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>265 192 161 58 50 25 25 17 16 16 16 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7</canonical_bands>
                <polymorphic_bands>265 192 161 58 50 25 25 17 17 16 16 16 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCCTGCTGCAGATTCTAT</pcr_primer_p1>
		<pcr_primer_p2>TGCTCTGTTTCATGAGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>723</pcr_amplicon_size>
		<canonical_amplicon>GATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATT</canonical_amplicon>
		<polymorphic_amplicon>GATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAMATTTCTGAATTTCTGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29384</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>259375</contig_pos>
        <strand></strand>
        <context>ttctgaattt[T/C]trartttctg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTT</left_flank>
        <right_flank>TAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCCAAAAGGAAGTGCGATATATGGAAAATAGAGGACCCAGAAGAAAAGTGTCCAGTGATGTTTGAGTGGCGAGAAAAGTTGAGAGTGACGTATTCCGCGCTTGACATATGAATCGGAGATAAGAGGGAGAGGGAGATAAGAATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGA</canonical>
            <polymorphic>ACCCAAAAGGAAGTGCGATATATGGAAAATAGAGGACCCAGAAGAAAAGTGTCCAGTGATGTTTGAGTGGCGAGAAAAGTTGAGAGTGACGTATTCCGCGCTTGACATATGAATCGGAGATAAGAGGGAGAGGGAGATAAGAATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTYTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>386 365 135 114</canonical_bands>
                <polymorphic_bands>479 386 135</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCCTGCTGCAGATTCTAT</pcr_primer_p1>
		<pcr_primer_p2>TGCTCTGTTTCATGAGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>723</pcr_amplicon_size>
		<canonical_amplicon>GATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGA</canonical_amplicon>
		<polymorphic_amplicon>GATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTYTAAGTTTCTGAATTTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29385</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>259377</contig_pos>
        <strand></strand>
        <context>ctgaatttyt[A/G]artttctgaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTT</left_flank>
        <right_flank>AGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAAAGGAAGTGCGATATATGGAAAATAGAGGACCCAGAAGAAAAGTGTCCAGTGATGTTTGAGTGGCGAGAAAAGTTGAGAGTGACGTATTCCGCGCTTGACATATGAATCGGAGATAAGAGGGAGAGGGAGATAAGAATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAA</canonical>
            <polymorphic>CCAAAAGGAAGTGCGATATATGGAAAATAGAGGACCCAGAAGAAAAGTGTCCAGTGATGTTTGAGTGGCGAGAAAAGTTGAGAGTGACGTATTCCGCGCTTGACATATGAATCGGAGATAAGAGGGAGAGGGAGATAAGAATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTRAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>384 365 137 114</canonical_bands>
                <polymorphic_bands>479 384 137</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCCTGCTGCAGATTCTAT</pcr_primer_p1>
		<pcr_primer_p2>TGCTCTGTTTCATGAGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>723</pcr_amplicon_size>
		<canonical_amplicon>GATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAAT</canonical_amplicon>
		<polymorphic_amplicon>GATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTRAGTTTCTGAATTTCTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29386</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>259379</contig_pos>
        <strand></strand>
        <context>gaatttytra[G/A]tttctgaatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAA</left_flank>
        <right_flank>TTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGGAAGTGCGATATATGGAAAATAGAGGACCCAGAAGAAAAGTGTCCAGTGATGTTTGAGTGGCGAGAAAAGTTGAGAGTGACGTATTCCGCGCTTGACATATGAATCGGAGATAAGAGGGAGAGGGAGATAAGAATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACA</canonical>
            <polymorphic>AAAAGGAAGTGCGATATATGGAAAATAGAGGACCCAGAAGAAAAGTGTCCAGTGATGTTTGAGTGGCGAGAAAAGTTGAGAGTGACGTATTCCGCGCTTGACATATGAATCGGAGATAAGAGGGAGAGGGAGATAAGAATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAARTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCCTGCTGCAGATTCTAT</pcr_primer_p1>
		<pcr_primer_p2>TGCTCTGTTTCATGAGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>723</pcr_amplicon_size>
		<canonical_amplicon>GATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTT</canonical_amplicon>
		<polymorphic_amplicon>GATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAARTTTCTGAATTTCTGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29387</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>259418</contig_pos>
        <strand></strand>
        <context>tgaatttctg[C/A]atttctgaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTG</left_flank>
        <right_flank>ATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAGTGTCCAGTGATGTTTGAGTGGCGAGAAAAGTTGAGAGTGACGTATTCCGCGCTTGACATATGAATCGGAGATAAGAGGGAGAGGGAGATAAGAATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCATCATGGCTACACCCTAGCCCAGCGCGCATTCTGA</canonical>
            <polymorphic>GAAAAGTGTCCAGTGATGTTTGAGTGGCGAGAAAAGTTGAGAGTGACGTATTCCGCGCTTGACATATGAATCGGAGATAAGAGGGAGAGGGAGATAAGAATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGMATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCATCATGGCTACACCCTAGCCCAGCGCGCATTCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>501 253 246</canonical_bands>
                <polymorphic_bands>747 253</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCCTGCTGCAGATTCTAT</pcr_primer_p1>
		<pcr_primer_p2>TGCTCTGTTTCATGAGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>723</pcr_amplicon_size>
		<canonical_amplicon>GATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCA</canonical_amplicon>
		<polymorphic_amplicon>GATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGMATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29388</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>259432</contig_pos>
        <strand></strand>
        <context>tctgaatttc[A/T]raatttttga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTC</left_flank>
        <right_flank>GAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGTTTGAGTGGCGAGAAAAGTTGAGAGTGACGTATTCCGCGCTTGACATATGAATCGGAGATAAGAGGGAGAGGGAGATAAGAATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCATCATGGCTACACCCTAGCCCAGCGCGCATTCTGATTTCTGCAAAGTGT</canonical>
            <polymorphic>GATGTTTGAGTGGCGAGAAAAGTTGAGAGTGACGTATTCCGCGCTTGACATATGAATCGGAGATAAGAGGGAGAGGGAGATAAGAATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCWGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCATCATGGCTACACCCTAGCCCAGCGCGCATTCTGATTTCTGCAAAGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCCTGCTGCAGATTCTAT</pcr_primer_p1>
		<pcr_primer_p2>TGCTCTGTTTCATGAGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>723</pcr_amplicon_size>
		<canonical_amplicon>GATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCA</canonical_amplicon>
		<polymorphic_amplicon>GATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCWGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29389</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>259433</contig_pos>
        <strand></strand>
        <context>ctgaatttcw[G/A]aatttttgaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCA</left_flank>
        <right_flank>AATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTTTGAGTGGCGAGAAAAGTTGAGAGTGACGTATTCCGCGCTTGACATATGAATCGGAGATAAGAGGGAGAGGGAGATAAGAATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCATCATGGCTACACCCTAGCCCAGCGCGCATTCTGATTTCTGCAAAGTGTC</canonical>
            <polymorphic>ATGTTTGAGTGGCGAGAAAAGTTGAGAGTGACGTATTCCGCGCTTGACATATGAATCGGAGATAAGAGGGAGAGGGAGATAAGAATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCARAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCATCATGGCTACACCCTAGCCCAGCGCGCATTCTGATTTCTGCAAAGTGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>347 271 58 50 34 25 17 16 16 16 16 9 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7</canonical_bands>
                <polymorphic_bands>347 271 58 50 34 25 17 16 16 16 16 16 9 8 8 8 8 8 8 8 8 8 8 8 7 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>243 238 58 55 53 43 33 25 24 17 17 17 16 16 16 16 9 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>243 238 58 55 53 43 33 32 25 17 17 17 16 16 16 16 9 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCCTGCTGCAGATTCTAT</pcr_primer_p1>
		<pcr_primer_p2>TGCTCTGTTTCATGAGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>723</pcr_amplicon_size>
		<canonical_amplicon>GATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCA</canonical_amplicon>
		<polymorphic_amplicon>GATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCARAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29390</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>259471</contig_pos>
        <strand></strand>
        <context>ttctgaattt[C/T]tgaatttctg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTT</left_flank>
        <right_flank>TGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCGCTTGACATATGAATCGGAGATAAGAGGGAGAGGGAGATAAGAATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCATCATGGCTACACCCTAGCCCAGCGCGCATTCTGATTTCTGCAAAGTGTCCAAAAGTTCACATTCTCTGACCTTTATCCAATTCTCGC</canonical>
            <polymorphic>CGCGCTTGACATATGAATCGGAGATAAGAGGGAGAGGGAGATAAGAATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTYTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCATCATGGCTACACCCTAGCCCAGCGCGCATTCTGATTTCTGCAAAGTGTCCAAAAGTTCACATTCTCTGACCTTTATCCAATTCTCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>243 238 55 53 43 35 33 25 24 20 20 17 17 16 16 16 16 9 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>243 238 55 53 43 35 33 25 24 20 20 17 17 16 16 16 16 16 9 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCCTGCTGCAGATTCTAT</pcr_primer_p1>
		<pcr_primer_p2>TGCTCTGTTTCATGAGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>723</pcr_amplicon_size>
		<canonical_amplicon>GATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTYTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCA</canonical_amplicon>
		<polymorphic_amplicon>GATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTYTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29391</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>259485</contig_pos>
        <strand></strand>
        <context>atttctgaat[T/A]yytgaatttc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAAT</left_flank>
        <right_flank>TTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATAT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATCGGAGATAAGAGGGAGAGGGAGATAAGAATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCATCATGGCTACACCCTAGCCCAGCGCGCATTCTGATTTCTGCAAAGTGTCCAAAAGTTCACATTCTCTGACCTTTATCCAATTCTCGCTTTTTTTGCAGTTG</canonical>
            <polymorphic>GAATCGGAGATAAGAGGGAGAGGGAGATAAGAATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATWTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCATCATGGCTACACCCTAGCCCAGCGCGCATTCTGATTTCTGCAAAGTGTCCAAAAGTTCACATTCTCTGACCTTTATCCAATTCTCGCTTTTTTTGCAGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>323 295 58 50 34 25 17 16 16 16 16 9 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7</canonical_bands>
                <polymorphic_bands>323 295 58 50 34 25 17 16 16 16 16 16 9 8 8 8 8 8 8 8 8 8 8 8 7 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>300 161 134 58 50 25 25 23 17 16 16 16 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7</canonical_bands>
                <polymorphic_bands>300 161 134 58 50 25 25 23 17 16 16 16 16 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCCTGCTGCAGATTCTAT</pcr_primer_p1>
		<pcr_primer_p2>TGCTCTGTTTCATGAGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>723</pcr_amplicon_size>
		<canonical_amplicon>GATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCA</canonical_amplicon>
		<polymorphic_amplicon>GATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATWTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29392</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>259486</contig_pos>
        <strand></strand>
        <context>tttctgaatw[T/C]ytgaatttct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATT</left_flank>
        <right_flank>TTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCGGAGATAAGAGGGAGAGGGAGATAAGAATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCATCATGGCTACACCCTAGCCCAGCGCGCATTCTGATTTCTGCAAAGTGTCCAAAAGTTCACATTCTCTGACCTTTATCCAATTCTCGCTTTTTTTGCAGTTGA</canonical>
            <polymorphic>AATCGGAGATAAGAGGGAGAGGGAGATAAGAATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTYTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCATCATGGCTACACCCTAGCCCAGCGCGCATTCTGATTTCTGCAAAGTGTCCAAAAGTTCACATTCTCTGACCTTTATCCAATTCTCGCTTTTTTTGCAGTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>324 294 58 50 34 25 17 16 16 16 16 9 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7</canonical_bands>
                <polymorphic_bands>324 294 58 50 34 25 17 16 16 16 16 16 9 8 8 8 8 8 8 8 8 8 8 8 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCCTGCTGCAGATTCTAT</pcr_primer_p1>
		<pcr_primer_p2>TGCTCTGTTTCATGAGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>723</pcr_amplicon_size>
		<canonical_amplicon>GATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCA</canonical_amplicon>
		<polymorphic_amplicon>GATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTYTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29393</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>259487</contig_pos>
        <strand></strand>
        <context>ttctgaatwy[T/C]tgaatttctg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTT</left_flank>
        <right_flank>TGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGGAGATAAGAGGGAGAGGGAGATAAGAATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCATCATGGCTACACCCTAGCCCAGCGCGCATTCTGATTTCTGCAAAGTGTCCAAAAGTTCACATTCTCTGACCTTTATCCAATTCTCGCTTTTTTTGCAGTTGAG</canonical>
            <polymorphic>ATCGGAGATAAGAGGGAGAGGGAGATAAGAATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTYTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCATCATGGCTACACCCTAGCCCAGCGCGCATTCTGATTTCTGCAAAGTGTCCAAAAGTTCACATTCTCTGACCTTTATCCAATTCTCGCTTTTTTTGCAGTTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCCTGCTGCAGATTCTAT</pcr_primer_p1>
		<pcr_primer_p2>TGCTCTGTTTCATGAGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>723</pcr_amplicon_size>
		<canonical_amplicon>GATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCA</canonical_amplicon>
		<polymorphic_amplicon>GATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTYTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29394</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>259509</contig_pos>
        <strand></strand>
        <context>atttctGAAT[A/T]CCTGATYttc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAAT</left_flank>
        <right_flank>CCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATAAGAATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCATCATGGCTACACCCTAGCCCAGCGCGCATTCTGATTTCTGCAAAGTGTCCAAAAGTTCACATTCTCTGACCTTTATCCAATTCTCGCTTTTTTTGCAGTTGAGCGTGTTCGTCATGCACACGACG</canonical>
            <polymorphic>AGATAAGAATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATWCCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCATCATGGCTACACCCTAGCCCAGCGCGCATTCTGATTTCTGCAAAGTGTCCAAAAGTTCACATTCTCTGACCTTTATCCAATTCTCGCTTTTTTTGCAGTTGAGCGTGTTCGTCATGCACACGACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCCTGCTGCAGATTCTAT</pcr_primer_p1>
		<pcr_primer_p2>TGCTCTGTTTCATGAGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>723</pcr_amplicon_size>
		<canonical_amplicon>GATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCA</canonical_amplicon>
		<polymorphic_amplicon>GATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATWCCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29395</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>259516</contig_pos>
        <strand></strand>
        <context>AATWCCTGAT[C/T]ttctgatttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGAT</left_flank>
        <right_flank>TTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCATCATGGCTACACCCTAGCCCAGCGCGCATTCTGATTTCTGCAAAGTGTCCAAAAGTTCACATTCTCTGACCTTTATCCAATTCTCGCTTTTTTTGCAGTTGAGCGTGTTCGTCATGCACACGACGTCGTCGT</canonical>
            <polymorphic>AATGTGATAAGTGTATGAAATCCCTAATCGTTCTTGGGAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATYTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCATCATGGCTACACCCTAGCCCAGCGCGCATTCTGATTTCTGCAAAGTGTCCAAAAGTTCACATTCTCTGACCTTTATCCAATTCTCGCTTTTTTTGCAGTTGAGCGTGTTCGTCATGCACACGACGTCGTCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>293 177 165 65 57 28 28 23 21 18 18 18 18 17 9 9 9 9 9 9</canonical_bands>
                <polymorphic_bands>470 165 65 57 28 28 23 21 18 18 18 18 17 9 9 9 9 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCCTGCTGCAGATTCTAT</pcr_primer_p1>
		<pcr_primer_p2>TGCTCTGTTTCATGAGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>723</pcr_amplicon_size>
		<canonical_amplicon>GATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCA</canonical_amplicon>
		<polymorphic_amplicon>GATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATYTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29396</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>259553</contig_pos>
        <strand></strand>
        <context>ttcaaaattt[C/A]atgatttttg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTT</left_flank>
        <right_flank>ATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCATCATGGCTACACCCTAGCCCAGCGCGCATTCTGATTTCTGCAAAGTGTCCAAAAGTTCACATTCTCTGACCTTTATCCAATTCTCGCTTTTTTTGCAGTTGAGCGTGTTCGTCATGCACACGACGTCGTCGTTCTCGATCTGGTGCTGGCTGGTGCTCTCCGCGGTCCG</canonical>
            <polymorphic>GAGCCAGAGAGTTCAAACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTMATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCATCATGGCTACACCCTAGCCCAGCGCGCATTCTGATTTCTGCAAAGTGTCCAAAAGTTCACATTCTCTGACCTTTATCCAATTCTCGCTTTTTTTGCAGTTGAGCGTGTTCGTCATGCACACGACGTCGTCGTTCTCGATCTGGTGCTGGCTGGTGCTCTCCGCGGTCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>468 318 183 31</canonical_bands>
                <polymorphic_bands>786 183 31</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>468 176 142 111 56 32 15</canonical_bands>
                <polymorphic_bands>610 176 111 56 32 15</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>362 244 147 89 49 35 25 22 17 10</canonical_bands>
                <polymorphic_bands>362 244 147 89 49 42 35 22 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCCTGCTGCAGATTCTAT</pcr_primer_p1>
		<pcr_primer_p2>TGCTCTGTTTCATGAGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>723</pcr_amplicon_size>
		<canonical_amplicon>GATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCA</canonical_amplicon>
		<polymorphic_amplicon>GATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTMATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29397</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>259568</contig_pos>
        <strand></strand>
        <context>tttttgaaat[G/T]tcggaatatc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAAT</left_flank>
        <right_flank>TCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCATCATGGCTACACCCTAGCCCAGCGCGCATTCTGATTTCTGCAAAGTGTCCAAAAGTTCACATTCTCTGACCTTTATCCAATTCTCGCTTTTTTTGCAGTTGAGCGTGTTCGTCATGCACACGACGTCGTCGTTCTCGATCTGGTGCTGGCTGGTGCTCTCCGCGGTCCGCTACGTGGCAGTTTA</canonical>
            <polymorphic>AACGTTCTAGAAAGATCATGACTAAGTAGTGCTTGAGATCAATGTATCAAAAATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATKTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCATCATGGCTACACCCTAGCCCAGCGCGCATTCTGATTTCTGCAAAGTGTCCAAAAGTTCACATTCTCTGACCTTTATCCAATTCTCGCTTTTTTTGCAGTTGAGCGTGTTCGTCATGCACACGACGTCGTCGTTCTCGATCTGGTGCTGGCTGGTGCTCTCCGCGGTCCGCTACGTGGCAGTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCCTGCTGCAGATTCTAT</pcr_primer_p1>
		<pcr_primer_p2>TGCTCTGTTTCATGAGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>723</pcr_amplicon_size>
		<canonical_amplicon>GATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCA</canonical_amplicon>
		<polymorphic_amplicon>GATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATKTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29398</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>259619</contig_pos>
        <strand></strand>
        <context>ttcggaattt[C/T]agaaaatcct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTT</left_flank>
        <right_flank>AGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCATCATGGCTACACCCTAGCCCAGCGCGCATTCTGATTTCTGCAAAGTGTCCAAAAGTTCACATTCTCTGACCTTTATCCAATTCTCGCTTTTTTTGCAGTTGAGCGTGTTCGTCATGCACACGACGTCGTCGTTCTCGATCTGGTGCTGGCTGGTGCTCTCCGCGGTCCGCTACGTGGCAGTTTACCGCCCGTACACACACCTTAAACTCAATAAGGAGCCTCGTCTCGCCGTGGT</canonical>
            <polymorphic>AATTGTGATTTGGGAGAAGCTGAGCAACAGCTTTGGCTAGAAGATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTYAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCATCATGGCTACACCCTAGCCCAGCGCGCATTCTGATTTCTGCAAAGTGTCCAAAAGTTCACATTCTCTGACCTTTATCCAATTCTCGCTTTTTTTGCAGTTGAGCGTGTTCGTCATGCACACGACGTCGTCGTTCTCGATCTGGTGCTGGCTGGTGCTCTCCGCGGTCCGCTACGTGGCAGTTTACCGCCCGTACACACACCTTAAACTCAATAAGGAGCCTCGTCTCGCCGTGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>243 168 110 55 53 43 35 33 25 24 17 17 16 16 16 16 9 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>243 168 110 61 55 43 35 33 25 24 17 17 16 16 16 16 9 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCCTGCTGCAGATTCTAT</pcr_primer_p1>
		<pcr_primer_p2>TGCTCTGTTTCATGAGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>723</pcr_amplicon_size>
		<canonical_amplicon>GATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTCAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCA</canonical_amplicon>
		<polymorphic_amplicon>GATCCTGCTGCAGATTCTATAGATCCTATAGATCCTATTGGAGATGTGTGTTAGAAATGATCTTTTCGGAGTTTTTGGAAGTTCAGAATACTCCGATTTTTAAGATTTCGAAATGCCGAAATTTCTAAATTGGAAAATTTGGAATTTCGGAATATTCCAGTTTTTACAATTTCCGAAATTCGGAATTTTCGAAATTTCTGAATTTCTGAATTTTTAAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCAGAATTTTTGAATTTCTGGATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATACCTGATCTTCTGATTTTCAGAAATATCCCGATTTTCAAAATTTCATGATTTTTGAAATGTCGGAATATCCCGAGTTTCGAAGTTGCGGCACTTCGGAATTTCGGAATTTYAGAAAATCCTGATTTTCAAAATTTCAGCATTTTTGGAATTCCAAATTCCGGTCCGAACATCCCTGCTATAGATCCCATGGATCCTGTGGATCTCAGTAATCCTATAGATCCTTAGGATCATTAAGATCCTATAGATCCTATAGAACCCAAAGAATCTTTAGGATCTATAGATACTATAGATCCTAAAGACTCTATCGATCCCATAGATACTTACGATCCTATAGACCTCCACGATCCTATAGACCGAACCTCATGAAACAGAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29399</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>294514</contig_pos>
        <strand>+</strand>
        <context>AATTTCGGTC[C/G]GTCGAAAGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCAAAGTATTCATGTGATTGATGGGTTAGTTGTGAGGATCAATTTCGGTC</left_flank>
        <right_flank>GTCGAAAGTTGCCGACAGCTGGCCGACCGCCGAGCGATAGCCGACCAAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTCACCTTTGAAAATATCGATCGTGGCAGTAAGTTTTCTTCATGCTCTACAAAAAACGAAGCACATCTAAACATTCAGATACCTCAAAATACATGCTTTATTCTGTGAAACACCTGGCCTACGGAGGCATTCTGGTGACACCCGATGGAATGTTCTATTGGGCTGTTGGCCTCGTCATTTTCCCATTTTTTGTGAACGCATTCACGTTTGCCAGATTCTATTATCTGAAAAATCAAGCGAGTCAGAATTCGGAAAAATTTAATAACGCCAAGAAGAATATGTCAATGTTCGTTCAAACGGTAATCCAGGATTCGTTATTCTCGGTCAGTGTGATATTCACGCTGAAGATGAAGTAAGTTTAGAGATTCTATAAAAACTGGGAAACACAAGTTTTAGTACTTTGATCGACCATCGCTTCTACACATTCTTCAGTCAGACTTTCTTATGGCAAAGTATTCATGTGATTGATGGGTTAGTTGTGAGGATCAATTTCGGTCCGTCGAAAGTTGCCGACAGCTGGCCGACCGCCGAGCGATAGCCGACCAAACTGATCGATCGGTCGGCGCGCCGACCGAATTCTTGAATTTGCGTTTCAACATGCTAGAGAGTGTTTGCGTAGACAGCACTTTTTTTACGACGCACTACTCCATAAATGCGCTGTGTGTCGTCGTAAAATAAAATGCTATCACTCGCAAGTTGACCCGCAAATTCAAGAGCTCGGTGGGCGCGCTTACCGATAGTTCAGCTTGGTCGGCGGTCGACCTGGAATCCCTATGCTCTTGTTTTTTTTTCCAGAATTATCATGATCCTCTTCAACGAACGTCTCTCTATAGGCAAAAACAAACGGATCAGTCCCAAGGAAAACTCGCAGAAAAACACTTCTACAGTGGCCGCTACAGTACCACATACAGCACCGACCAGCCATCTTCCAGTAGTACATTGAGACTTTGCACTTTGACGAAAGTCAAGATGATGATTACTAATTTCTAGACTGATGA</canonical>
            <polymorphic>ATCTCACCTTTGAAAATATCGATCGTGGCAGTAAGTTTTCTTCATGCTCTACAAAAAACGAAGCACATCTAAACATTCAGATACCTCAAAATACATGCTTTATTCTGTGAAACACCTGGCCTACGGAGGCATTCTGGTGACACCCGATGGAATGTTCTATTGGGCTGTTGGCCTCGTCATTTTCCCATTTTTTGTGAACGCATTCACGTTTGCCAGATTCTATTATCTGAAAAATCAAGCGAGTCAGAATTCGGAAAAATTTAATAACGCCAAGAAGAATATGTCAATGTTCGTTCAAACGGTAATCCAGGATTCGTTATTCTCGGTCAGTGTGATATTCACGCTGAAGATGAAGTAAGTTTAGAGATTCTATAAAAACTGGGAAACACAAGTTTTAGTACTTTGATCGACCATCGCTTCTACACATTCTTCAGTCAGACTTTCTTATGGCAAAGTATTCATGTGATTGATGGGTTAGTTGTGAGGATCAATTTCGGTCSGTCGAAAGTTGCCGACAGCTGGCCGACCGCCGAGCGATAGCCGACCAAACTGATCGATCGGTCGGCGCGCCGACCGAATTCTTGAATTTGCGTTTCAACATGCTAGAGAGTGTTTGCGTAGACAGCACTTTTTTTACGACGCACTACTCCATAAATGCGCTGTGTGTCGTCGTAAAATAAAATGCTATCACTCGCAAGTTGACCCGCAAATTCAAGAGCTCGGTGGGCGCGCTTACCGATAGTTCAGCTTGGTCGGCGGTCGACCTGGAATCCCTATGCTCTTGTTTTTTTTTCCAGAATTATCATGATCCTCTTCAACGAACGTCTCTCTATAGGCAAAAACAAACGGATCAGTCCCAAGGAAAACTCGCAGAAAAACACTTCTACAGTGGCCGCTACAGTACCACATACAGCACCGACCAGCCATCTTCCAGTAGTACATTGAGACTTTGCACTTTGACGAAAGTCAAGATGATGATTACTAATTTCTAGACTGATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CGGWCCG</site>
                <isoschizomers>
                    <enzyme>CpoI</enzyme>
                    <enzyme>CspI</enzyme>
                    <enzyme>Rsr2I</enzyme>
                    <enzyme>RsrII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>504 328 137 31</canonical_bands>
                <polymorphic_bands>641 328 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTTCTTATGGCAAAGTATTCA</pcr_primer_p1>
		<pcr_primer_p2>TTTATTTTACGACGACACACAG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ACTTTCTTATGGCAAAGTATTCATGTGATTGATGGGTTAGTTGTGAGGATCAATTTCGGTCCGTCGAAAGTTGCCGACAGCTGGCCGACCGCCGAGCGATAGCCGACCAAACTGATCGATCGGTCGGCGCGCCGACCGAATTCTTGAATTTGCGTTTCAACATGCTAGAGAGTGTTTGCGTAGACAGCACTTTTTTTACGACGCACTACTCCATAAATGCGCTGTGTGTCGTCGTAAAATAAA</canonical_amplicon>
		<polymorphic_amplicon>ACTTTCTTATGGCAAAGTATTCATGTGATTGATGGGTTAGTTGTGAGGATCAATTTCGGTCSGTCGAAAGTTGCCGACAGCTGGCCGACCGCCGAGCGATAGCCGACCAAACTGATCGATCGGTCGGCGCGCCGACCGAATTCTTGAATTTGCGTTTCAACATGCTAGAGAGTGTTTGCGTAGACAGCACTTTTTTTACGACGCACTACTCCATAAATGCGCTGTGTGTCGTCGTAAAATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29400</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>294597</contig_pos>
        <strand>+</strand>
        <context>ACCGAATTCT[C/T]GAATTTGCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCGATAGCCGACCAAACTGATCGATCGGTCGGCGCGCCGACCGAATTCT</left_flank>
        <right_flank>GAATTTGCGTTTCAACATGCTAGAGAGTGTTTGCGTAGACAGCACTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCAAAATACATGCTTTATTCTGTGAAACACCTGGCCTACGGAGGCATTCTGGTGACACCCGATGGAATGTTCTATTGGGCTGTTGGCCTCGTCATTTTCCCATTTTTTGTGAACGCATTCACGTTTGCCAGATTCTATTATCTGAAAAATCAAGCGAGTCAGAATTCGGAAAAATTTAATAACGCCAAGAAGAATATGTCAATGTTCGTTCAAACGGTAATCCAGGATTCGTTATTCTCGGTCAGTGTGATATTCACGCTGAAGATGAAGTAAGTTTAGAGATTCTATAAAAACTGGGAAACACAAGTTTTAGTACTTTGATCGACCATCGCTTCTACACATTCTTCAGTCAGACTTTCTTATGGCAAAGTATTCATGTGATTGATGGGTTAGTTGTGAGGATCAATTTCGGTCCGTCGAAAGTTGCCGACAGCTGGCCGACCGCCGAGCGATAGCCGACCAAACTGATCGATCGGTCGGCGCGCCGACCGAATTCTTGAATTTGCGTTTCAACATGCTAGAGAGTGTTTGCGTAGACAGCACTTTTTTTACGACGCACTACTCCATAAATGCGCTGTGTGTCGTCGTAAAATAAAATGCTATCACTCGCAAGTTGACCCGCAAATTCAAGAGCTCGGTGGGCGCGCTTACCGATAGTTCAGCTTGGTCGGCGGTCGACCTGGAATCCCTATGCTCTTGTTTTTTTTTCCAGAATTATCATGATCCTCTTCAACGAACGTCTCTCTATAGGCAAAAACAAACGGATCAGTCCCAAGGAAAACTCGCAGAAAAACACTTCTACAGTGGCCGCTACAGTACCACATACAGCACCGACCAGCCATCTTCCAGTAGTACATTGAGACTTTGCACTTTGACGAAAGTCAAGATGATGATTACTAATTTCTAGACTGATGATTATGTGATAGTGATTTGTCTAGACGCACTTTTAACGAGATTTCTAAATTTGGATTGTGAATGTATGTAGTTTGATCAGAAGG</canonical>
            <polymorphic>CCTCAAAATACATGCTTTATTCTGTGAAACACCTGGCCTACGGAGGCATTCTGGTGACACCCGATGGAATGTTCTATTGGGCTGTTGGCCTCGTCATTTTCCCATTTTTTGTGAACGCATTCACGTTTGCCAGATTCTATTATCTGAAAAATCAAGCGAGTCAGAATTCGGAAAAATTTAATAACGCCAAGAAGAATATGTCAATGTTCGTTCAAACGGTAATCCAGGATTCGTTATTCTCGGTCAGTGTGATATTCACGCTGAAGATGAAGTAAGTTTAGAGATTCTATAAAAACTGGGAAACACAAGTTTTAGTACTTTGATCGACCATCGCTTCTACACATTCTTCAGTCAGACTTTCTTATGGCAAAGTATTCATGTGATTGATGGGTTAGTTGTGAGGATCAATTTCGGTCCGTCGAAAGTTGCCGACAGCTGGCCGACCGCCGAGCGATAGCCGACCAAACTGATCGATCGGTCGGCGCGCCGACCGAATTCTYGAATTTGCGTTTCAACATGCTAGAGAGTGTTTGCGTAGACAGCACTTTTTTTACGACGCACTACTCCATAAATGCGCTGTGTGTCGTCGTAAAATAAAATGCTATCACTCGCAAGTTGACCCGCAAATTCAAGAGCTCGGTGGGCGCGCTTACCGATAGTTCAGCTTGGTCGGCGGTCGACCTGGAATCCCTATGCTCTTGTTTTTTTTTCCAGAATTATCATGATCCTCTTCAACGAACGTCTCTCTATAGGCAAAAACAAACGGATCAGTCCCAAGGAAAACTCGCAGAAAAACACTTCTACAGTGGCCGCTACAGTACCACATACAGCACCGACCAGCCATCTTCCAGTAGTACATTGAGACTTTGCACTTTGACGAAAGTCAAGATGATGATTACTAATTTCTAGACTGATGATTATGTGATAGTGATTTGTCTAGACGCACTTTTAACGAGATTTCTAAATTTGGATTGTGAATGTATGTAGTTTGATCAGAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTCTTATGGCAAAGTATTCA</pcr_primer_p1>
		<pcr_primer_p2>TTTATTTTACGACGACACACAG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ACTTTCTTATGGCAAAGTATTCATGTGATTGATGGGTTAGTTGTGAGGATCAATTTCGGTCCGTCGAAAGTTGCCGACAGCTGGCCGACCGCCGAGCGATAGCCGACCAAACTGATCGATCGGTCGGCGCGCCGACCGAATTCTTGAATTTGCGTTTCAACATGCTAGAGAGTGTTTGCGTAGACAGCACTTTTTTTACGACGCACTACTCCATAAATGCGCTGTGTGTCGTCGTAAAATAAA</canonical_amplicon>
		<polymorphic_amplicon>ACTTTCTTATGGCAAAGTATTCATGTGATTGATGGGTTAGTTGTGAGGATCAATTTCGGTCCGTCGAAAGTTGCCGACAGCTGGCCGACCGCCGAGCGATAGCCGACCAAACTGATCGATCGGTCGGCGCGCCGACCGAATTCTYGAATTTGCGTTTCAACATGCTAGAGAGTGTTTGCGTAGACAGCACTTTTTTTACGACGCACTACTCCATAAATGCGCTGTGTGTCGTCGTAAAATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29401</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>294652</contig_pos>
        <strand>+</strand>
        <context>CTTTTTTTAC[A/G]ACGCACTACT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGCGTTTCAACATGCTAGAGAGTGTTTGCGTAGACAGCACTTTTTTTAC</left_flank>
        <right_flank>ACGCACTACTCCATAAATGCGCTGTGTGTCGTCGTAAAATAAAATGCTAT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACACCCGATGGAATGTTCTATTGGGCTGTTGGCCTCGTCATTTTCCCATTTTTTGTGAACGCATTCACGTTTGCCAGATTCTATTATCTGAAAAATCAAGCGAGTCAGAATTCGGAAAAATTTAATAACGCCAAGAAGAATATGTCAATGTTCGTTCAAACGGTAATCCAGGATTCGTTATTCTCGGTCAGTGTGATATTCACGCTGAAGATGAAGTAAGTTTAGAGATTCTATAAAAACTGGGAAACACAAGTTTTAGTACTTTGATCGACCATCGCTTCTACACATTCTTCAGTCAGACTTTCTTATGGCAAAGTATTCATGTGATTGATGGGTTAGTTGTGAGGATCAATTTCGGTCCGTCGAAAGTTGCCGACAGCTGGCCGACCGCCGAGCGATAGCCGACCAAACTGATCGATCGGTCGGCGCGCCGACCGAATTCTTGAATTTGCGTTTCAACATGCTAGAGAGTGTTTGCGTAGACAGCACTTTTTTTACGACGCACTACTCCATAAATGCGCTGTGTGTCGTCGTAAAATAAAATGCTATCACTCGCAAGTTGACCCGCAAATTCAAGAGCTCGGTGGGCGCGCTTACCGATAGTTCAGCTTGGTCGGCGGTCGACCTGGAATCCCTATGCTCTTGTTTTTTTTTCCAGAATTATCATGATCCTCTTCAACGAACGTCTCTCTATAGGCAAAAACAAACGGATCAGTCCCAAGGAAAACTCGCAGAAAAACACTTCTACAGTGGCCGCTACAGTACCACATACAGCACCGACCAGCCATCTTCCAGTAGTACATTGAGACTTTGCACTTTGACGAAAGTCAAGATGATGATTACTAATTTCTAGACTGATGATTATGTGATAGTGATTTGTCTAGACGCACTTTTAACGAGATTTCTAAATTTGGATTGTGAATGTATGTAGTTTGATCAGAAGGGCTTTCAGAAACTTGTTTACTGCCGATAAATATAAAAATGAACTATAAATGTTTA</canonical>
            <polymorphic>GACACCCGATGGAATGTTCTATTGGGCTGTTGGCCTCGTCATTTTCCCATTTTTTGTGAACGCATTCACGTTTGCCAGATTCTATTATCTGAAAAATCAAGCGAGTCAGAATTCGGAAAAATTTAATAACGCCAAGAAGAATATGTCAATGTTCGTTCAAACGGTAATCCAGGATTCGTTATTCTCGGTCAGTGTGATATTCACGCTGAAGATGAAGTAAGTTTAGAGATTCTATAAAAACTGGGAAACACAAGTTTTAGTACTTTGATCGACCATCGCTTCTACACATTCTTCAGTCAGACTTTCTTATGGCAAAGTATTCATGTGATTGATGGGTTAGTTGTGAGGATCAATTTCGGTCCGTCGAAAGTTGCCGACAGCTGGCCGACCGCCGAGCGATAGCCGACCAAACTGATCGATCGGTCGGCGCGCCGACCGAATTCTTGAATTTGCGTTTCAACATGCTAGAGAGTGTTTGCGTAGACAGCACTTTTTTTACRACGCACTACTCCATAAATGCGCTGTGTGTCGTCGTAAAATAAAATGCTATCACTCGCAAGTTGACCCGCAAATTCAAGAGCTCGGTGGGCGCGCTTACCGATAGTTCAGCTTGGTCGGCGGTCGACCTGGAATCCCTATGCTCTTGTTTTTTTTTCCAGAATTATCATGATCCTCTTCAACGAACGTCTCTCTATAGGCAAAAACAAACGGATCAGTCCCAAGGAAAACTCGCAGAAAAACACTTCTACAGTGGCCGCTACAGTACCACATACAGCACCGACCAGCCATCTTCCAGTAGTACATTGAGACTTTGCACTTTGACGAAAGTCAAGATGATGATTACTAATTTCTAGACTGATGATTATGTGATAGTGATTTGTCTAGACGCACTTTTAACGAGATTTCTAAATTTGGATTGTGAATGTATGTAGTTTGATCAGAAGGGCTTTCAGAAACTTGTTTACTGCCGATAAATATAAAAATGAACTATAAATGTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>466 366 137 31</canonical_bands>
                <polymorphic_bands>466 366 168</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTAGTTGTGAGGATCAATTT</pcr_primer_p1>
		<pcr_primer_p2>CCAAGCTGAACTATCGGTAA</pcr_primer_p2>
		<pcr_amplicon_size>280</pcr_amplicon_size>
		<canonical_amplicon>GGTTAGTTGTGAGGATCAATTTCGGTCCGTCGAAAGTTGCCGACAGCTGGCCGACCGCCGAGCGATAGCCGACCAAACTGATCGATCGGTCGGCGCGCCGACCGAATTCTTGAATTTGCGTTTCAACATGCTAGAGAGTGTTTGCGTAGACAGCACTTTTTTTACGACGCACTACTCCATAAATGCGCTGTGTGTCGTCGTAAAATAAAATGCTATCACTCGCAAGTTGACCCGCAAATTCAAGAGCTCGGTGGGCGCGCTTACCGATAGTTCAGCTTGG</canonical_amplicon>
		<polymorphic_amplicon>GGTTAGTTGTGAGGATCAATTTCGGTCCGTCGAAAGTTGCCGACAGCTGGCCGACCGCCGAGCGATAGCCGACCAAACTGATCGATCGGTCGGCGCGCCGACCGAATTCTTGAATTTGCGTTTCAACATGCTAGAGAGTGTTTGCGTAGACAGCACTTTTTTTACRACGCACTACTCCATAAATGCGCTGTGTGTCGTCGTAAAATAAAATGCTATCACTCGCAAGTTGACCCGCAAATTCAAGAGCTCGGTGGGCGCGCTTACCGATAGTTCAGCTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29402</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>297566</contig_pos>
        <strand>+</strand>
        <context>TTAGGAACTA[A/G]AGAGATCAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTCTAAAAATGGAAGGTCCCTAGGAAGCTTTGAGTGAAATTAGGAACTA</left_flank>
        <right_flank>AGAGATCAAGAATTTCCAATTTTCTAATTTCTAGAAACTTTCCAATTATT</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCGATTTCGTGCCTTTGCGCATCAAAATGCCTATATTTGCATACTAAACACTTTATTTTACGGCAAATGCGGCATTTTATGAGTAGTTTGTCGTATAATACAATGCTGCGTATGCATACACGTTGATGCGCAAATGCACGAAAATGGTCGGCGCGCCTACCGATCGGTCAGCTCGGTCGGCTGTCGGTCGGCGGGGTCGGTGGTCGGTAAATTTCCCGACCGAATGGAAGCCTTAGTTTAGAATGTTCTAGAATTCTCCAGAAGCCTTCAAGATCATCTAATAGTCAGAGCGTTCTTGAGACGTCTACAATTTTCTATTTCGACGGGCCCATCTATTCGCTTTTCCAAACTTTTAAGGGGGCTTTAGAACTTTCTAGATGGTGAAGTCTTTCGAAATTCTGGATGCTCTTCGAATGTTGGCTTGGCTACGGGGCTCCGATTTGTGATAGCTCTAAAAATGGAAGGTCCCTAGGAAGCTTTGAGTGAAATTAGGAACTAAAGAGATCAAGAATTTCCAATTTTCTAATTTCTAGAAACTTTCCAATTATTTCAGGAAGCGATCCTCGGTATTTTATTCAGCTCGTGTGTAGTATTCATATATTTTGAATCATCTGACAGAACCAGTTTCAATCTGATATGCCTCTCCAGAGCAATCAATAACATTATTGTGCTTCTCTTCAATTTTTTGGTCCTTGAGTTCCCTATACTTTTACTGTAAGGCACTTTTACCGTAAAACCTGTAATAGAAGGGCATCAATTTTGAGCTGATTTTACTTGGCTCCTGTGCAAGATATCAAAGATTTGTCTACTGATAAAAGTTTCGTGATGTTGTGATAAAAAATTTATCAGTTGACAACTTTTCCGTACCTTTGGCGGGTACCGAGATAAATTGGCTCAACGCGACAAGTTAGGGAGTCGTTCTATTACAGGCCTAACGGTATTTTTGTCCGTTTCAAATAGAATATTGTTTCAGCTACAAAAATATTCTCCCAGCGAAAA</canonical>
            <polymorphic>ACCGATTTCGTGCCTTTGCGCATCAAAATGCCTATATTTGCATACTAAACACTTTATTTTACGGCAAATGCGGCATTTTATGAGTAGTTTGTCGTATAATACAATGCTGCGTATGCATACACGTTGATGCGCAAATGCACGAAAATGGTCGGCGCGCCTACCGATCGGTCAGCTCGGTCGGCTGTCGGTCGGCGGGGTCGGTGGTCGGTAAATTTCCCGACCGAATGGAAGCCTTAGTTTAGAATGTTCTAGAATTCTCCAGAAGCCTTCAAGATCATCTAATAGTCAGAGCGTTCTTGAGACGTCTACAATTTTCTATTTCGACGGGCCCATCTATTCGCTTTTCCAAACTTTTAAGGGGGCTTTAGAACTTTCTAGATGGTGAAGTCTTTCGAAATTCTGGATGCTCTTCGAATGTTGGCTTGGCTACGGGGCTCCGATTTGTGATAGCTCTAAAAATGGAAGGTCCCTAGGAAGCTTTGAGTGAAATTAGGAACTARAGAGATCAAGAATTTCCAATTTTCTAATTTCTAGAAACTTTCCAATTATTTCAGGAAGCGATCCTCGGTATTTTATTCAGCTCGTGTGTAGTATTCATATATTTTGAATCATCTGACAGAACCAGTTTCAATCTGATATGCCTCTCCAGAGCAATCAATAACATTATTGTGCTTCTCTTCAATTTTTTGGTCCTTGAGTTCCCTATACTTTTACTGTAAGGCACTTTTACCGTAAAACCTGTAATAGAAGGGCATCAATTTTGAGCTGATTTTACTTGGCTCCTGTGCAAGATATCAAAGATTTGTCTACTGATAAAAGTTTCGTGATGTTGTGATAAAAAATTTATCAGTTGACAACTTTTCCGTACCTTTGGCGGGTACCGAGATAAATTGGCTCAACGCGACAAGTTAGGGAGTCGTTCTATTACAGGCCTAACGGTATTTTTGTCCGTTTCAAATAGAATATTGTTTCAGCTACAAAAATATTCTCCCAGCGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATAGCTCTAAAAATGGAAGGTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTGAAGAGAAGCACAATA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GATAGCTCTAAAAATGGAAGGTCCCTAGGAAGCTTTGAGTGAAATTAGGAACTAAAGAGATCAAGAATTTCCAATTTTCTAATTTCTAGAAACTTTCCAATTATTTCAGGAAGCGATCCTCGGTATTTTATTCAGCTCGTGTGTAGTATTCATATATTTTGAATCATCTGACAGAACCAGTTTCAATCTGATATGCCTCTCCAGAGCAATCAATAACATTATTGTGCTTCTCTTCAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>GATAGCTCTAAAAATGGAAGGTCCCTAGGAAGCTTTGAGTGAAATTAGGAACTARAGAGATCAAGAATTTCCAATTTTCTAATTTCTAGAAACTTTCCAATTATTTCAGGAAGCGATCCTCGGTATTTTATTCAGCTCGTGTGTAGTATTCATATATTTTGAATCATCTGACAGAACCAGTTTCAATCTGATATGCCTCTCCAGAGCAATCAATAACATTATTGTGCTTCTCTTCAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29403</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>297585</contig_pos>
        <strand>+</strand>
        <context>AGAATTTCCA[A/C]TTTTCTAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCTAGGAAGCTTTGAGTGAAATTAGGAACTAAAGAGATCAAGAATTTCCA</left_flank>
        <right_flank>TTTTCTAATTTCTAGAAACTTTCCAATTATTTCAGGAAGCGATCCTCGGT</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCATCAAAATGCCTATATTTGCATACTAAACACTTTATTTTACGGCAAATGCGGCATTTTATGAGTAGTTTGTCGTATAATACAATGCTGCGTATGCATACACGTTGATGCGCAAATGCACGAAAATGGTCGGCGCGCCTACCGATCGGTCAGCTCGGTCGGCTGTCGGTCGGCGGGGTCGGTGGTCGGTAAATTTCCCGACCGAATGGAAGCCTTAGTTTAGAATGTTCTAGAATTCTCCAGAAGCCTTCAAGATCATCTAATAGTCAGAGCGTTCTTGAGACGTCTACAATTTTCTATTTCGACGGGCCCATCTATTCGCTTTTCCAAACTTTTAAGGGGGCTTTAGAACTTTCTAGATGGTGAAGTCTTTCGAAATTCTGGATGCTCTTCGAATGTTGGCTTGGCTACGGGGCTCCGATTTGTGATAGCTCTAAAAATGGAAGGTCCCTAGGAAGCTTTGAGTGAAATTAGGAACTAAAGAGATCAAGAATTTCCAATTTTCTAATTTCTAGAAACTTTCCAATTATTTCAGGAAGCGATCCTCGGTATTTTATTCAGCTCGTGTGTAGTATTCATATATTTTGAATCATCTGACAGAACCAGTTTCAATCTGATATGCCTCTCCAGAGCAATCAATAACATTATTGTGCTTCTCTTCAATTTTTTGGTCCTTGAGTTCCCTATACTTTTACTGTAAGGCACTTTTACCGTAAAACCTGTAATAGAAGGGCATCAATTTTGAGCTGATTTTACTTGGCTCCTGTGCAAGATATCAAAGATTTGTCTACTGATAAAAGTTTCGTGATGTTGTGATAAAAAATTTATCAGTTGACAACTTTTCCGTACCTTTGGCGGGTACCGAGATAAATTGGCTCAACGCGACAAGTTAGGGAGTCGTTCTATTACAGGCCTAACGGTATTTTTGTCCGTTTCAAATAGAATATTGTTTCAGCTACAAAAATATTCTCCCAGCGAAAATCGAAACTTTCATAATTTT</canonical>
            <polymorphic>GCATCAAAATGCCTATATTTGCATACTAAACACTTTATTTTACGGCAAATGCGGCATTTTATGAGTAGTTTGTCGTATAATACAATGCTGCGTATGCATACACGTTGATGCGCAAATGCACGAAAATGGTCGGCGCGCCTACCGATCGGTCAGCTCGGTCGGCTGTCGGTCGGCGGGGTCGGTGGTCGGTAAATTTCCCGACCGAATGGAAGCCTTAGTTTAGAATGTTCTAGAATTCTCCAGAAGCCTTCAAGATCATCTAATAGTCAGAGCGTTCTTGAGACGTCTACAATTTTCTATTTCGACGGGCCCATCTATTCGCTTTTCCAAACTTTTAAGGGGGCTTTAGAACTTTCTAGATGGTGAAGTCTTTCGAAATTCTGGATGCTCTTCGAATGTTGGCTTGGCTACGGGGCTCCGATTTGTGATAGCTCTAAAAATGGAAGGTCCCTAGGAAGCTTTGAGTGAAATTAGGAACTAAAGAGATCAAGAATTTCCAMTTTTCTAATTTCTAGAAACTTTCCAATTATTTCAGGAAGCGATCCTCGGTATTTTATTCAGCTCGTGTGTAGTATTCATATATTTTGAATCATCTGACAGAACCAGTTTCAATCTGATATGCCTCTCCAGAGCAATCAATAACATTATTGTGCTTCTCTTCAATTTTTTGGTCCTTGAGTTCCCTATACTTTTACTGTAAGGCACTTTTACCGTAAAACCTGTAATAGAAGGGCATCAATTTTGAGCTGATTTTACTTGGCTCCTGTGCAAGATATCAAAGATTTGTCTACTGATAAAAGTTTCGTGATGTTGTGATAAAAAATTTATCAGTTGACAACTTTTCCGTACCTTTGGCGGGTACCGAGATAAATTGGCTCAACGCGACAAGTTAGGGAGTCGTTCTATTACAGGCCTAACGGTATTTTTGTCCGTTTCAAATAGAATATTGTTTCAGCTACAAAAATATTCTCCCAGCGAAAATCGAAACTTTCATAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>191 137 125 92 86 84 76 57 48 42 23 18 8 7 6</canonical_bands>
                <polymorphic_bands>191 137 125 92 86 84 76 57 48 42 23 18 15 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATAGCTCTAAAAATGGAAGGTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTGAAGAGAAGCACAATA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GATAGCTCTAAAAATGGAAGGTCCCTAGGAAGCTTTGAGTGAAATTAGGAACTAAAGAGATCAAGAATTTCCAATTTTCTAATTTCTAGAAACTTTCCAATTATTTCAGGAAGCGATCCTCGGTATTTTATTCAGCTCGTGTGTAGTATTCATATATTTTGAATCATCTGACAGAACCAGTTTCAATCTGATATGCCTCTCCAGAGCAATCAATAACATTATTGTGCTTCTCTTCAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>GATAGCTCTAAAAATGGAAGGTCCCTAGGAAGCTTTGAGTGAAATTAGGAACTAAAGAGATCAAGAATTTCCAMTTTTCTAATTTCTAGAAACTTTCCAATTATTTCAGGAAGCGATCCTCGGTATTTTATTCAGCTCGTGTGTAGTATTCATATATTTTGAATCATCTGACAGAACCAGTTTCAATCTGATATGCCTCTCCAGAGCAATCAATAACATTATTGTGCTTCTCTTCAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29404</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>297848</contig_pos>
        <strand></strand>
        <context>ttacttggct[C/T]ctgtgcaaga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTAAAACCTGTAATAGAAGGGCATCAATTTTGAGCTGATTTTACTTGGCT</left_flank>
        <right_flank>CTGTGCAAGATATCAAAGATTTGTCTACTGATAAAAGTTTCGTGATGTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGTCAGAGCGTTCTTGAGACGTCTACAATTTTCTATTTCGACGGGCCCATCTATTCGCTTTTCCAAACTTTTAAGGGGGCTTTAGAACTTTCTAGATGGTGAAGTCTTTCGAAATTCTGGATGCTCTTCGAATGTTGGCTTGGCTACGGGGCTCCGATTTGTGATAGCTCTAAAAATGGAAGGTCCCTAGGAAGCTTTGAGTGAAATTAGGAACTAAAGAGATCAAGAATTTCCAATTTTCTAATTTCTAGAAACTTTCCAATTATTTCAGGAAGCGATCCTCGGTATTTTATTCAGCTCGTGTGTAGTATTCATATATTTTGAATCATCTGACAGAACCAGTTTCAATCTGATATGCCTCTCCAGAGCAATCAATAACATTATTGTGCTTCTCTTCAATTTTTTGGTCCTTGAGTTCCCTATACTTTTACTGTAAGGCACTTTTACCGTAAAACCTGTAATAGAAGGGCATCAATTTTGAGCTGATTTTACTTGGCTCCTGTGCAAGATATCAAAGATTTGTCTACTGATAAAAGTTTCGTGATGTTGTGATAAAAAATTTATCAGTTGACAACTTTTCCGTACCTTTGGCGGGTACCGAGATAAATTGGCTCAACGCGACAAGTTAGGGAGTCGTTCTATTACAGGCCTAACGGTATTTTTGTCCGTTTCAAATAGAATATTGTTTCAGCTACAAAAATATTCTCCCAGCGAAAATCGAAACTTTCATAATTTTCATAACAGTCAATTTATATATGGTCAATGAATTCCAAACTGTACTCATCGCAGCCAATCGATTCATTGCCATGTTTTTACCTCTGCTTTATCATCAACTTTGCAGTAACAAAATTACAATGGTATAATTTTGAATACCGCCGTAAAACCTTTAATACAAGGGCCCCATACTGTCAACTTTGAGCTTAATTATCTCGCTTCCTATGATAACTGATAAAATATTGGTTATATTATGTTTAATATATTATCACTTCACCGCTTTTT</canonical>
            <polymorphic>TAGTCAGAGCGTTCTTGAGACGTCTACAATTTTCTATTTCGACGGGCCCATCTATTCGCTTTTCCAAACTTTTAAGGGGGCTTTAGAACTTTCTAGATGGTGAAGTCTTTCGAAATTCTGGATGCTCTTCGAATGTTGGCTTGGCTACGGGGCTCCGATTTGTGATAGCTCTAAAAATGGAAGGTCCCTAGGAAGCTTTGAGTGAAATTAGGAACTAAAGAGATCAAGAATTTCCAATTTTCTAATTTCTAGAAACTTTCCAATTATTTCAGGAAGCGATCCTCGGTATTTTATTCAGCTCGTGTGTAGTATTCATATATTTTGAATCATCTGACAGAACCAGTTTCAATCTGATATGCCTCTCCAGAGCAATCAATAACATTATTGTGCTTCTCTTCAATTTTTTGGTCCTTGAGTTCCCTATACTTTTACTGTAAGGCACTTTTACCGTAAAACCTGTAATAGAAGGGCATCAATTTTGAGCTGATTTTACTTGGCTYCTGTGCAAGATATCAAAGATTTGTCTACTGATAAAAGTTTCGTGATGTTGTGATAAAAAATTTATCAGTTGACAACTTTTCCGTACCTTTGGCGGGTACCGAGATAAATTGGCTCAACGCGACAAGTTAGGGAGTCGTTCTATTACAGGCCTAACGGTATTTTTGTCCGTTTCAAATAGAATATTGTTTCAGCTACAAAAATATTCTCCCAGCGAAAATCGAAACTTTCATAATTTTCATAACAGTCAATTTATATATGGTCAATGAATTCCAAACTGTACTCATCGCAGCCAATCGATTCATTGCCATGTTTTTACCTCTGCTTTATCATCAACTTTGCAGTAACAAAATTACAATGGTATAATTTTGAATACCGCCGTAAAACCTTTAATACAAGGGCCCCATACTGTCAACTTTGAGCTTAATTATCTCGCTTCCTATGATAACTGATAAAATATTGGTTATATTATGTTTAATATATTATCACTTCACCGCTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>313 302 107 101 99 46 32</canonical_bands>
                <polymorphic_bands>412 302 107 101 46 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTATACTTTTACTGTAAGGCACTTT</pcr_primer_p1>
		<pcr_primer_p2>TCTATTTGAAACGGACAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>CCTATACTTTTACTGTAAGGCACTTTTACCGTAAAACCTGTAATAGAAGGGCATCAATTTTGAGCTGATTTTACTTGGCTCCTGTGCAAGATATCAAAGATTTGTCTACTGATAAAAGTTTCGTGATGTTGTGATAAAAAATTTATCAGTTGACAACTTTTCCGTACCTTTGGCGGGTACCGAGATAAATTGGCTCAACGCGACAAGTTAGGGAGTCGTTCTATTACAGGCCTAACGGTATTTTTGTCCGTTTCAAATAGA</canonical_amplicon>
		<polymorphic_amplicon>CCTATACTTTTACTGTAAGGCACTTTTACCGTAAAACCTGTAATAGAAGGGCATCAATTTTGAGCTGATTTTACTTGGCTYCTGTGCAAGATATCAAAGATTTGTCTACTGATAAAAGTTTCGTGATGTTGTGATAAAAAATTTATCAGTTGACAACTTTTCCGTACCTTTGGCGGGTACCGAGATAAATTGGCTCAACGCGACAAGTTAGGGAGTCGTTCTATTACAGGCCTAACGGTATTTTTGTCCGTTTCAAATAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29405</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>304233</contig_pos>
        <strand>+</strand>
        <context>TTAGTACAAA[C/T]GTTTTAGCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGCCATATGAAAAATAACCACTGGTCTGAAATATTAGATTAGTACAAA</left_flank>
        <right_flank>GTTTTAGCAACCCGAATGTGTTCTTCATTCAACCTAGAGACTAGTGATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACATAATATTTGATCAGGAATGCCAGGATTTGACTATCCATGGGAAACGACCGATCAATAATGGAACTTTGGAAAAAGTATTCGAGCTCTCCAAAAGTAAACGGATTATCATGCATGTGCCCATTAAGCCAGGTTTTCAATTGGACACTGAAAAAATGAAAGGAAGAAACATCAGTATCAAGGATGGGAGTTGGCTTAACTATAAGAGAGACAACAAGTTTATGGAATTGTGTACCAATTTCGAGTTAATGGATGATCATTTTGTAACACCGTTCCGCTTCGCATCTTTTGTGGACAAATGGATCAGGAGCGATGACAAACATTTTGAGAATTGCCTAGTTACATGGACAAATATAACCGTCGATGATGTGGATTTCAGAAACTTTCCATTTATTCCTTTTGATAGAAGTCAAAGAAGCCAAACGTACAAGTGAGTCGTTTTATATAATGCCATATGAAAAATAACCACTGGTCTGAAATATTAGATTAGTACAAACGTTTTAGCAACCCGAATGTGTTCTTCATTCAACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTACATGTGAAATTCTATTTCCGTTTCCGTTTCCGTTTTCCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCGAAAAAAAACATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTTTCAAAAAAAAAATAACGATTCCGTTTCCGTTTCCGTTTTCCGTAAAATGTTTTTACTCTTTTTTTTTCGTTTCCGTTTACCGCGAGAAAAAATTCCCTTTCCGTTTCCATTTTCCGTATTTCTGGAAAATGCGTTTCATCCCATCACTGGCTGATACCATCTAATGGTTTCAGCATTTTATTTGATATCTAATGTATTTAGAAGCTTCTGAAACTTCAAATATCCCTTT</canonical>
            <polymorphic>AAAACATAATATTTGATCAGGAATGCCAGGATTTGACTATCCATGGGAAACGACCGATCAATAATGGAACTTTGGAAAAAGTATTCGAGCTCTCCAAAAGTAAACGGATTATCATGCATGTGCCCATTAAGCCAGGTTTTCAATTGGACACTGAAAAAATGAAAGGAAGAAACATCAGTATCAAGGATGGGAGTTGGCTTAACTATAAGAGAGACAACAAGTTTATGGAATTGTGTACCAATTTCGAGTTAATGGATGATCATTTTGTAACACCGTTCCGCTTCGCATCTTTTGTGGACAAATGGATCAGGAGCGATGACAAACATTTTGAGAATTGCCTAGTTACATGGACAAATATAACCGTCGATGATGTGGATTTCAGAAACTTTCCATTTATTCCTTTTGATAGAAGTCAAAGAAGCCAAACGTACAAGTGAGTCGTTTTATATAATGCCATATGAAAAATAACCACTGGTCTGAAATATTAGATTAGTACAAAYGTTTTAGCAACCCGAATGTGTTCTTCATTCAACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTACATGTGAAATTCTATTTCCGTTTCCGTTTCCGTTTTCCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCGAAAAAAAACATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTTTCAAAAAAAAAATAACGATTCCGTTTCCGTTTCCGTTTTCCGTAAAATGTTTTTACTCTTTTTTTTTCGTTTCCGTTTACCGCGAGAAAAAATTCCCTTTCCGTTTCCATTTTCCGTATTTCTGGAAAATGCGTTTCATCCCATCACTGGCTGATACCATCTAATGGTTTCAGCATTTTATTTGATATCTAATGTATTTAGAAGCTTCTGAAACTTCAAATATCCCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>499 253 248</canonical_bands>
                <polymorphic_bands>752 248</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>426 253 248 73</canonical_bands>
                <polymorphic_bands>426 326 248</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATAATGCCATATGAAAAATAACC</pcr_primer_p1>
		<pcr_primer_p2>AATAAAATGCTGAAACCATTAGA</pcr_primer_p2>
		<pcr_amplicon_size>507</pcr_amplicon_size>
		<canonical_amplicon>TATAATGCCATATGAAAAATAACCACTGGTCTGAAATATTAGATTAGTACAAACGTTTTAGCAACCCGAATGTGTTCTTCATTCAACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTACATGTGAAATTCTATTTCCGTTTCCGTTTCCGTTTTCCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCGAAAAAAAACATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTTTCAAAAAAAAAATAACGATTCCGTTTCCGTTTCCGTTTTCCGTAAAATGTTTTTACTCTTTTTTTTTCGTTTCCGTTTACCGCGAGAAAAAATTCCCTTTCCGTTTCCATTTTCCGTATTTCTGGAAAATGCGTTTCATCCCATCACTGGCTGATACCATCTAATGGTTTCAGCATTTTATT</canonical_amplicon>
		<polymorphic_amplicon>TATAATGCCATATGAAAAATAACCACTGGTCTGAAATATTAGATTAGTACAAAYGTTTTAGCAACCCGAATGTGTTCTTCATTCAACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTACATGTGAAATTCTATTTCCGTTTCCGTTTCCGTTTTCCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCGAAAAAAAACATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTTTCAAAAAAAAAATAACGATTCCGTTTCCGTTTCCGTTTTCCGTAAAATGTTTTTACTCTTTTTTTTTCGTTTCCGTTTACCGCGAGAAAAAATTCCCTTTCCGTTTCCATTTTCCGTATTTCTGGAAAATGCGTTTCATCCCATCACTGGCTGATACCATCTAATGGTTTCAGCATTTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29406</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>304264</contig_pos>
        <strand>+</strand>
        <context>TTCTTCATTC[A/T]ACCTAGAGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATATTAGATTAGTACAAACGTTTTAGCAACCCGAATGTGTTCTTCATTC</left_flank>
        <right_flank>ACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGACTATCCATGGGAAACGACCGATCAATAATGGAACTTTGGAAAAAGTATTCGAGCTCTCCAAAAGTAAACGGATTATCATGCATGTGCCCATTAAGCCAGGTTTTCAATTGGACACTGAAAAAATGAAAGGAAGAAACATCAGTATCAAGGATGGGAGTTGGCTTAACTATAAGAGAGACAACAAGTTTATGGAATTGTGTACCAATTTCGAGTTAATGGATGATCATTTTGTAACACCGTTCCGCTTCGCATCTTTTGTGGACAAATGGATCAGGAGCGATGACAAACATTTTGAGAATTGCCTAGTTACATGGACAAATATAACCGTCGATGATGTGGATTTCAGAAACTTTCCATTTATTCCTTTTGATAGAAGTCAAAGAAGCCAAACGTACAAGTGAGTCGTTTTATATAATGCCATATGAAAAATAACCACTGGTCTGAAATATTAGATTAGTACAAACGTTTTAGCAACCCGAATGTGTTCTTCATTCAACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTACATGTGAAATTCTATTTCCGTTTCCGTTTCCGTTTTCCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCGAAAAAAAACATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTTTCAAAAAAAAAATAACGATTCCGTTTCCGTTTCCGTTTTCCGTAAAATGTTTTTACTCTTTTTTTTTCGTTTCCGTTTACCGCGAGAAAAAATTCCCTTTCCGTTTCCATTTTCCGTATTTCTGGAAAATGCGTTTCATCCCATCACTGGCTGATACCATCTAATGGTTTCAGCATTTTATTTGATATCTAATGTATTTAGAAGCTTCTGAAACTTCAAATATCCCTTTCGTAATGTGAATTTTTCAGATACAATAAAAA</canonical>
            <polymorphic>TTTGACTATCCATGGGAAACGACCGATCAATAATGGAACTTTGGAAAAAGTATTCGAGCTCTCCAAAAGTAAACGGATTATCATGCATGTGCCCATTAAGCCAGGTTTTCAATTGGACACTGAAAAAATGAAAGGAAGAAACATCAGTATCAAGGATGGGAGTTGGCTTAACTATAAGAGAGACAACAAGTTTATGGAATTGTGTACCAATTTCGAGTTAATGGATGATCATTTTGTAACACCGTTCCGCTTCGCATCTTTTGTGGACAAATGGATCAGGAGCGATGACAAACATTTTGAGAATTGCCTAGTTACATGGACAAATATAACCGTCGATGATGTGGATTTCAGAAACTTTCCATTTATTCCTTTTGATAGAAGTCAAAGAAGCCAAACGTACAAGTGAGTCGTTTTATATAATGCCATATGAAAAATAACCACTGGTCTGAAATATTAGATTAGTACAAACGTTTTAGCAACCCGAATGTGTTCTTCATTCWACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTACATGTGAAATTCTATTTCCGTTTCCGTTTCCGTTTTCCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCGAAAAAAAACATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTTTCAAAAAAAAAATAACGATTCCGTTTCCGTTTCCGTTTTCCGTAAAATGTTTTTACTCTTTTTTTTTCGTTTCCGTTTACCGCGAGAAAAAATTCCCTTTCCGTTTCCATTTTCCGTATTTCTGGAAAATGCGTTTCATCCCATCACTGGCTGATACCATCTAATGGTTTCAGCATTTTATTTGATATCTAATGTATTTAGAAGCTTCTGAAACTTCAAATATCCCTTTCGTAATGTGAATTTTTCAGATACAATAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATAACCACTGGTCTGAAATA</pcr_primer_p1>
		<pcr_primer_p2>AATAAAATGCTGAAACCATTAGA</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>AAAATAACCACTGGTCTGAAATATTAGATTAGTACAAACGTTTTAGCAACCCGAATGTGTTCTTCATTCAACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTACATGTGAAATTCTATTTCCGTTTCCGTTTCCGTTTTCCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCGAAAAAAAACATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTTTCAAAAAAAAAATAACGATTCCGTTTCCGTTTCCGTTTTCCGTAAAATGTTTTTACTCTTTTTTTTTCGTTTCCGTTTACCGCGAGAAAAAATTCCCTTTCCGTTTCCATTTTCCGTATTTCTGGAAAATGCGTTTCATCCCATCACTGGCTGATACCATCTAATGGTTTCAGCATTTTATT</canonical_amplicon>
		<polymorphic_amplicon>AAAATAACCACTGGTCTGAAATATTAGATTAGTACAAACGTTTTAGCAACCCGAATGTGTTCTTCATTCWACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTACATGTGAAATTCTATTTCCGTTTCCGTTTCCGTTTTCCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCGAAAAAAAACATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTTTCAAAAAAAAAATAACGATTCCGTTTCCGTTTCCGTTTTCCGTAAAATGTTTTTACTCTTTTTTTTTCGTTTCCGTTTACCGCGAGAAAAAATTCCCTTTCCGTTTCCATTTTCCGTATTTCTGGAAAATGCGTTTCATCCCATCACTGGCTGATACCATCTAATGGTTTCAGCATTTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29407</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>304360</contig_pos>
        <strand></strand>
        <context>cgttttcgta[C/A]atgtgaaayt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTA</left_flank>
        <right_flank>ATGTGAAATTCTATTTCCGTTTCCGTTTCCGTTTTCCGGAAAAATCGCCA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAGCCAGGTTTTCAATTGGACACTGAAAAAATGAAAGGAAGAAACATCAGTATCAAGGATGGGAGTTGGCTTAACTATAAGAGAGACAACAAGTTTATGGAATTGTGTACCAATTTCGAGTTAATGGATGATCATTTTGTAACACCGTTCCGCTTCGCATCTTTTGTGGACAAATGGATCAGGAGCGATGACAAACATTTTGAGAATTGCCTAGTTACATGGACAAATATAACCGTCGATGATGTGGATTTCAGAAACTTTCCATTTATTCCTTTTGATAGAAGTCAAAGAAGCCAAACGTACAAGTGAGTCGTTTTATATAATGCCATATGAAAAATAACCACTGGTCTGAAATATTAGATTAGTACAAACGTTTTAGCAACCCGAATGTGTTCTTCATTCAACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTACATGTGAAATTCTATTTCCGTTTCCGTTTCCGTTTTCCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCGAAAAAAAACATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTTTCAAAAAAAAAATAACGATTCCGTTTCCGTTTCCGTTTTCCGTAAAATGTTTTTACTCTTTTTTTTTCGTTTCCGTTTACCGCGAGAAAAAATTCCCTTTCCGTTTCCATTTTCCGTATTTCTGGAAAATGCGTTTCATCCCATCACTGGCTGATACCATCTAATGGTTTCAGCATTTTATTTGATATCTAATGTATTTAGAAGCTTCTGAAACTTCAAATATCCCTTTCGTAATGTGAATTTTTCAGATACAATAAAAAACTAGCGATTGATTTGGCCGAAGGTTATGATATCTTGCGAGGAGACGGAACGCTTGCGACGATTGGAATTTTGGAAGATGGATTCTTTTTCGGTGT</canonical>
            <polymorphic>TAAGCCAGGTTTTCAATTGGACACTGAAAAAATGAAAGGAAGAAACATCAGTATCAAGGATGGGAGTTGGCTTAACTATAAGAGAGACAACAAGTTTATGGAATTGTGTACCAATTTCGAGTTAATGGATGATCATTTTGTAACACCGTTCCGCTTCGCATCTTTTGTGGACAAATGGATCAGGAGCGATGACAAACATTTTGAGAATTGCCTAGTTACATGGACAAATATAACCGTCGATGATGTGGATTTCAGAAACTTTCCATTTATTCCTTTTGATAGAAGTCAAAGAAGCCAAACGTACAAGTGAGTCGTTTTATATAATGCCATATGAAAAATAACCACTGGTCTGAAATATTAGATTAGTACAAACGTTTTAGCAACCCGAATGTGTTCTTCATTCAACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTAMATGTGAAATTCTATTTCCGTTTCCGTTTCCGTTTTCCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCGAAAAAAAACATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTTTCAAAAAAAAAATAACGATTCCGTTTCCGTTTCCGTTTTCCGTAAAATGTTTTTACTCTTTTTTTTTCGTTTCCGTTTACCGCGAGAAAAAATTCCCTTTCCGTTTCCATTTTCCGTATTTCTGGAAAATGCGTTTCATCCCATCACTGGCTGATACCATCTAATGGTTTCAGCATTTTATTTGATATCTAATGTATTTAGAAGCTTCTGAAACTTCAAATATCCCTTTCGTAATGTGAATTTTTCAGATACAATAAAAAACTAGCGATTGATTTGGCCGAAGGTTATGATATCTTGCGAGGAGACGGAACGCTTGCGACGATTGGAATTTTGGAAGATGGATTCTTTTTCGGTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 193 131 109 65</canonical_bands>
                <polymorphic_bands>633 193 109 65</polymorphic_bands>
            </assay>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>405 281 219 95</canonical_bands>
                <polymorphic_bands>405 376 219</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATAACCACTGGTCTGAAATA</pcr_primer_p1>
		<pcr_primer_p2>AATAAAATGCTGAAACCATTAGA</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>AAAATAACCACTGGTCTGAAATATTAGATTAGTACAAACGTTTTAGCAACCCGAATGTGTTCTTCATTCAACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTACATGTGAAATTCTATTTCCGTTTCCGTTTCCGTTTTCCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCGAAAAAAAACATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTTTCAAAAAAAAAATAACGATTCCGTTTCCGTTTCCGTTTTCCGTAAAATGTTTTTACTCTTTTTTTTTCGTTTCCGTTTACCGCGAGAAAAAATTCCCTTTCCGTTTCCATTTTCCGTATTTCTGGAAAATGCGTTTCATCCCATCACTGGCTGATACCATCTAATGGTTTCAGCATTTTATT</canonical_amplicon>
		<polymorphic_amplicon>AAAATAACCACTGGTCTGAAATATTAGATTAGTACAAACGTTTTAGCAACCCGAATGTGTTCTTCATTCAACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTAMATGTGAAATTCTATTTCCGTTTCCGTTTCCGTTTTCCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCGAAAAAAAACATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTTTCAAAAAAAAAATAACGATTCCGTTTCCGTTTCCGTTTTCCGTAAAATGTTTTTACTCTTTTTTTTTCGTTTCCGTTTACCGCGAGAAAAAATTCCCTTTCCGTTTCCATTTTCCGTATTTCTGGAAAATGCGTTTCATCCCATCACTGGCTGATACCATCTAATGGTTTCAGCATTTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29408</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>304369</contig_pos>
        <strand></strand>
        <context>amatgtgaaa[T/C]tctatttccg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTACATGTGAAA</left_flank>
        <right_flank>TCTATTTCCGTTTCCGTTTCCGTTTTCCGGAAAAATCGCCAATTTTTTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCAATTGGACACTGAAAAAATGAAAGGAAGAAACATCAGTATCAAGGATGGGAGTTGGCTTAACTATAAGAGAGACAACAAGTTTATGGAATTGTGTACCAATTTCGAGTTAATGGATGATCATTTTGTAACACCGTTCCGCTTCGCATCTTTTGTGGACAAATGGATCAGGAGCGATGACAAACATTTTGAGAATTGCCTAGTTACATGGACAAATATAACCGTCGATGATGTGGATTTCAGAAACTTTCCATTTATTCCTTTTGATAGAAGTCAAAGAAGCCAAACGTACAAGTGAGTCGTTTTATATAATGCCATATGAAAAATAACCACTGGTCTGAAATATTAGATTAGTACAAACGTTTTAGCAACCCGAATGTGTTCTTCATTCAACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTACATGTGAAATTCTATTTCCGTTTCCGTTTCCGTTTTCCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCGAAAAAAAACATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTTTCAAAAAAAAAATAACGATTCCGTTTCCGTTTCCGTTTTCCGTAAAATGTTTTTACTCTTTTTTTTTCGTTTCCGTTTACCGCGAGAAAAAATTCCCTTTCCGTTTCCATTTTCCGTATTTCTGGAAAATGCGTTTCATCCCATCACTGGCTGATACCATCTAATGGTTTCAGCATTTTATTTGATATCTAATGTATTTAGAAGCTTCTGAAACTTCAAATATCCCTTTCGTAATGTGAATTTTTCAGATACAATAAAAAACTAGCGATTGATTTGGCCGAAGGTTATGATATCTTGCGAGGAGACGGAACGCTTGCGACGATTGGAATTTTGGAAGATGGATTCTTTTTCGGTGTTTGGCATAA</canonical>
            <polymorphic>TTTTCAATTGGACACTGAAAAAATGAAAGGAAGAAACATCAGTATCAAGGATGGGAGTTGGCTTAACTATAAGAGAGACAACAAGTTTATGGAATTGTGTACCAATTTCGAGTTAATGGATGATCATTTTGTAACACCGTTCCGCTTCGCATCTTTTGTGGACAAATGGATCAGGAGCGATGACAAACATTTTGAGAATTGCCTAGTTACATGGACAAATATAACCGTCGATGATGTGGATTTCAGAAACTTTCCATTTATTCCTTTTGATAGAAGTCAAAGAAGCCAAACGTACAAGTGAGTCGTTTTATATAATGCCATATGAAAAATAACCACTGGTCTGAAATATTAGATTAGTACAAACGTTTTAGCAACCCGAATGTGTTCTTCATTCAACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTACATGTGAAAYTCTATTTCCGTTTCCGTTTCCGTTTTCCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCGAAAAAAAACATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTTTCAAAAAAAAAATAACGATTCCGTTTCCGTTTCCGTTTTCCGTAAAATGTTTTTACTCTTTTTTTTTCGTTTCCGTTTACCGCGAGAAAAAATTCCCTTTCCGTTTCCATTTTCCGTATTTCTGGAAAATGCGTTTCATCCCATCACTGGCTGATACCATCTAATGGTTTCAGCATTTTATTTGATATCTAATGTATTTAGAAGCTTCTGAAACTTCAAATATCCCTTTCGTAATGTGAATTTTTCAGATACAATAAAAAACTAGCGATTGATTTGGCCGAAGGTTATGATATCTTGCGAGGAGACGGAACGCTTGCGACGATTGGAATTTTGGAAGATGGATTCTTTTTCGGTGTTTGGCATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>418 228 148 88 79 39</canonical_bands>
                <polymorphic_bands>418 307 148 88 39</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>222 185 148 93 88 87 79 43 39 11 5</canonical_bands>
                <polymorphic_bands>222 185 148 122 93 88 87 39 11 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATAACCACTGGTCTGAAATA</pcr_primer_p1>
		<pcr_primer_p2>AATAAAATGCTGAAACCATTAGA</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>AAAATAACCACTGGTCTGAAATATTAGATTAGTACAAACGTTTTAGCAACCCGAATGTGTTCTTCATTCAACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTACATGTGAAATTCTATTTCCGTTTCCGTTTCCGTTTTCCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCGAAAAAAAACATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTTTCAAAAAAAAAATAACGATTCCGTTTCCGTTTCCGTTTTCCGTAAAATGTTTTTACTCTTTTTTTTTCGTTTCCGTTTACCGCGAGAAAAAATTCCCTTTCCGTTTCCATTTTCCGTATTTCTGGAAAATGCGTTTCATCCCATCACTGGCTGATACCATCTAATGGTTTCAGCATTTTATT</canonical_amplicon>
		<polymorphic_amplicon>AAAATAACCACTGGTCTGAAATATTAGATTAGTACAAACGTTTTAGCAACCCGAATGTGTTCTTCATTCAACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTACATGTGAAAYTCTATTTCCGTTTCCGTTTCCGTTTTCCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCGAAAAAAAACATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTTTCAAAAAAAAAATAACGATTCCGTTTCCGTTTCCGTTTTCCGTAAAATGTTTTTACTCTTTTTTTTTCGTTTCCGTTTACCGCGAGAAAAAATTCCCTTTCCGTTTCCATTTTCCGTATTTCTGGAAAATGCGTTTCATCCCATCACTGGCTGATACCATCTAATGGTTTCAGCATTTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29409</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>304396</contig_pos>
        <strand></strand>
        <context>tttccgtttt[C/T]cggaaaaatc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCCGTTTTCGTACATGTGAAATTCTATTTCCGTTTCCGTTTCCGTTTT</left_flank>
        <right_flank>CGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAAGAAACATCAGTATCAAGGATGGGAGTTGGCTTAACTATAAGAGAGACAACAAGTTTATGGAATTGTGTACCAATTTCGAGTTAATGGATGATCATTTTGTAACACCGTTCCGCTTCGCATCTTTTGTGGACAAATGGATCAGGAGCGATGACAAACATTTTGAGAATTGCCTAGTTACATGGACAAATATAACCGTCGATGATGTGGATTTCAGAAACTTTCCATTTATTCCTTTTGATAGAAGTCAAAGAAGCCAAACGTACAAGTGAGTCGTTTTATATAATGCCATATGAAAAATAACCACTGGTCTGAAATATTAGATTAGTACAAACGTTTTAGCAACCCGAATGTGTTCTTCATTCAACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTACATGTGAAATTCTATTTCCGTTTCCGTTTCCGTTTTCCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCGAAAAAAAACATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTTTCAAAAAAAAAATAACGATTCCGTTTCCGTTTCCGTTTTCCGTAAAATGTTTTTACTCTTTTTTTTTCGTTTCCGTTTACCGCGAGAAAAAATTCCCTTTCCGTTTCCATTTTCCGTATTTCTGGAAAATGCGTTTCATCCCATCACTGGCTGATACCATCTAATGGTTTCAGCATTTTATTTGATATCTAATGTATTTAGAAGCTTCTGAAACTTCAAATATCCCTTTCGTAATGTGAATTTTTCAGATACAATAAAAAACTAGCGATTGATTTGGCCGAAGGTTATGATATCTTGCGAGGAGACGGAACGCTTGCGACGATTGGAATTTTGGAAGATGGATTCTTTTTCGGTGTTTGGCATAACCGATTTCATGAAATTGATGGTCAAGA</canonical>
            <polymorphic>AGGAAGAAACATCAGTATCAAGGATGGGAGTTGGCTTAACTATAAGAGAGACAACAAGTTTATGGAATTGTGTACCAATTTCGAGTTAATGGATGATCATTTTGTAACACCGTTCCGCTTCGCATCTTTTGTGGACAAATGGATCAGGAGCGATGACAAACATTTTGAGAATTGCCTAGTTACATGGACAAATATAACCGTCGATGATGTGGATTTCAGAAACTTTCCATTTATTCCTTTTGATAGAAGTCAAAGAAGCCAAACGTACAAGTGAGTCGTTTTATATAATGCCATATGAAAAATAACCACTGGTCTGAAATATTAGATTAGTACAAACGTTTTAGCAACCCGAATGTGTTCTTCATTCAACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTACATGTGAAATTCTATTTCCGTTTCCGTTTCCGTTTTYCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCGAAAAAAAACATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTTTCAAAAAAAAAATAACGATTCCGTTTCCGTTTCCGTTTTCCGTAAAATGTTTTTACTCTTTTTTTTTCGTTTCCGTTTACCGCGAGAAAAAATTCCCTTTCCGTTTCCATTTTCCGTATTTCTGGAAAATGCGTTTCATCCCATCACTGGCTGATACCATCTAATGGTTTCAGCATTTTATTTGATATCTAATGTATTTAGAAGCTTCTGAAACTTCAAATATCCCTTTCGTAATGTGAATTTTTCAGATACAATAAAAAACTAGCGATTGATTTGGCCGAAGGTTATGATATCTTGCGAGGAGACGGAACGCTTGCGACGATTGGAATTTTGGAAGATGGATTCTTTTTCGGTGTTTGGCATAACCGATTTCATGAAATTGATGGTCAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCCGGA</site>
                <isoschizomers>
                    <enzyme>AccIII</enzyme>
                    <enzyme>BseAI</enzyme>
                    <enzyme>BsiMI</enzyme>
                    <enzyme>Bsp13I</enzyme>
                    <enzyme>BspEI</enzyme>
                    <enzyme>BspMII</enzyme>
                    <enzyme>Kpn2I</enzyme>
                    <enzyme>MroI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 427 73</canonical_bands>
                <polymorphic_bands>573 427</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>355 251 230 145 15 4</canonical_bands>
                <polymorphic_bands>585 251 145 15 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATAACCACTGGTCTGAAATA</pcr_primer_p1>
		<pcr_primer_p2>AATAAAATGCTGAAACCATTAGA</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>AAAATAACCACTGGTCTGAAATATTAGATTAGTACAAACGTTTTAGCAACCCGAATGTGTTCTTCATTCAACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTACATGTGAAATTCTATTTCCGTTTCCGTTTCCGTTTTCCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCGAAAAAAAACATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTTTCAAAAAAAAAATAACGATTCCGTTTCCGTTTCCGTTTTCCGTAAAATGTTTTTACTCTTTTTTTTTCGTTTCCGTTTACCGCGAGAAAAAATTCCCTTTCCGTTTCCATTTTCCGTATTTCTGGAAAATGCGTTTCATCCCATCACTGGCTGATACCATCTAATGGTTTCAGCATTTTATT</canonical_amplicon>
		<polymorphic_amplicon>AAAATAACCACTGGTCTGAAATATTAGATTAGTACAAACGTTTTAGCAACCCGAATGTGTTCTTCATTCAACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTACATGTGAAATTCTATTTCCGTTTCCGTTTCCGTTTTYCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCGAAAAAAAACATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTTTCAAAAAAAAAATAACGATTCCGTTTCCGTTTCCGTTTTCCGTAAAATGTTTTTACTCTTTTTTTTTCGTTTCCGTTTACCGCGAGAAAAAATTCCCTTTCCGTTTCCATTTTCCGTATTTCTGGAAAATGCGTTTCATCCCATCACTGGCTGATACCATCTAATGGTTTCAGCATTTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29410</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>304443</contig_pos>
        <strand></strand>
        <context>ataatgtagg[C/G]tcgaaamaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTCCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGG</left_flank>
        <right_flank>TCGAAAAAAAACATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGACAACAAGTTTATGGAATTGTGTACCAATTTCGAGTTAATGGATGATCATTTTGTAACACCGTTCCGCTTCGCATCTTTTGTGGACAAATGGATCAGGAGCGATGACAAACATTTTGAGAATTGCCTAGTTACATGGACAAATATAACCGTCGATGATGTGGATTTCAGAAACTTTCCATTTATTCCTTTTGATAGAAGTCAAAGAAGCCAAACGTACAAGTGAGTCGTTTTATATAATGCCATATGAAAAATAACCACTGGTCTGAAATATTAGATTAGTACAAACGTTTTAGCAACCCGAATGTGTTCTTCATTCAACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTACATGTGAAATTCTATTTCCGTTTCCGTTTCCGTTTTCCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCGAAAAAAAACATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTTTCAAAAAAAAAATAACGATTCCGTTTCCGTTTCCGTTTTCCGTAAAATGTTTTTACTCTTTTTTTTTCGTTTCCGTTTACCGCGAGAAAAAATTCCCTTTCCGTTTCCATTTTCCGTATTTCTGGAAAATGCGTTTCATCCCATCACTGGCTGATACCATCTAATGGTTTCAGCATTTTATTTGATATCTAATGTATTTAGAAGCTTCTGAAACTTCAAATATCCCTTTCGTAATGTGAATTTTTCAGATACAATAAAAAACTAGCGATTGATTTGGCCGAAGGTTATGATATCTTGCGAGGAGACGGAACGCTTGCGACGATTGGAATTTTGGAAGATGGATTCTTTTTCGGTGTTTGGCATAACCGATTTCATGAAATTGATGGTCAAGAAATCTGGATTTCTCGCAAAACTGGTTTATTCTGATAGTGAGAGTTAT</canonical>
            <polymorphic>GAGACAACAAGTTTATGGAATTGTGTACCAATTTCGAGTTAATGGATGATCATTTTGTAACACCGTTCCGCTTCGCATCTTTTGTGGACAAATGGATCAGGAGCGATGACAAACATTTTGAGAATTGCCTAGTTACATGGACAAATATAACCGTCGATGATGTGGATTTCAGAAACTTTCCATTTATTCCTTTTGATAGAAGTCAAAGAAGCCAAACGTACAAGTGAGTCGTTTTATATAATGCCATATGAAAAATAACCACTGGTCTGAAATATTAGATTAGTACAAACGTTTTAGCAACCCGAATGTGTTCTTCATTCAACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTACATGTGAAATTCTATTTCCGTTTCCGTTTCCGTTTTCCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGSTCGAAAAAAAACATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTTTCAAAAAAAAAATAACGATTCCGTTTCCGTTTCCGTTTTCCGTAAAATGTTTTTACTCTTTTTTTTTCGTTTCCGTTTACCGCGAGAAAAAATTCCCTTTCCGTTTCCATTTTCCGTATTTCTGGAAAATGCGTTTCATCCCATCACTGGCTGATACCATCTAATGGTTTCAGCATTTTATTTGATATCTAATGTATTTAGAAGCTTCTGAAACTTCAAATATCCCTTTCGTAATGTGAATTTTTCAGATACAATAAAAAACTAGCGATTGATTTGGCCGAAGGTTATGATATCTTGCGAGGAGACGGAACGCTTGCGACGATTGGAATTTTGGAAGATGGATTCTTTTTCGGTGTTTGGCATAACCGATTTCATGAAATTGATGGTCAAGAAATCTGGATTTCTCGCAAAACTGGTTTATTCTGATAGTGAGAGTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>211 181 177 162 107 73 54 35</canonical_bands>
                <polymorphic_bands>211 181 177 162 142 73 54</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATAACCACTGGTCTGAAATA</pcr_primer_p1>
		<pcr_primer_p2>AATAAAATGCTGAAACCATTAGA</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>AAAATAACCACTGGTCTGAAATATTAGATTAGTACAAACGTTTTAGCAACCCGAATGTGTTCTTCATTCAACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTACATGTGAAATTCTATTTCCGTTTCCGTTTCCGTTTTCCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCGAAAAAAAACATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTTTCAAAAAAAAAATAACGATTCCGTTTCCGTTTCCGTTTTCCGTAAAATGTTTTTACTCTTTTTTTTTCGTTTCCGTTTACCGCGAGAAAAAATTCCCTTTCCGTTTCCATTTTCCGTATTTCTGGAAAATGCGTTTCATCCCATCACTGGCTGATACCATCTAATGGTTTCAGCATTTTATT</canonical_amplicon>
		<polymorphic_amplicon>AAAATAACCACTGGTCTGAAATATTAGATTAGTACAAACGTTTTAGCAACCCGAATGTGTTCTTCATTCAACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTACATGTGAAATTCTATTTCCGTTTCCGTTTCCGTTTTCCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGSTCGAAAAAAAACATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTTTCAAAAAAAAAATAACGATTCCGTTTCCGTTTCCGTTTTCCGTAAAATGTTTTTACTCTTTTTTTTTCGTTTCCGTTTACCGCGAGAAAAAATTCCCTTTCCGTTTCCATTTTCCGTATTTCTGGAAAATGCGTTTCATCCCATCACTGGCTGATACCATCTAATGGTTTCAGCATTTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29411</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>304450</contig_pos>
        <strand></strand>
        <context>aggstcgaaa[A/C]aaarcatgga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCGAAA</left_flank>
        <right_flank>AAAACATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGTTTATGGAATTGTGTACCAATTTCGAGTTAATGGATGATCATTTTGTAACACCGTTCCGCTTCGCATCTTTTGTGGACAAATGGATCAGGAGCGATGACAAACATTTTGAGAATTGCCTAGTTACATGGACAAATATAACCGTCGATGATGTGGATTTCAGAAACTTTCCATTTATTCCTTTTGATAGAAGTCAAAGAAGCCAAACGTACAAGTGAGTCGTTTTATATAATGCCATATGAAAAATAACCACTGGTCTGAAATATTAGATTAGTACAAACGTTTTAGCAACCCGAATGTGTTCTTCATTCAACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTACATGTGAAATTCTATTTCCGTTTCCGTTTCCGTTTTCCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCGAAAAAAAACATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTTTCAAAAAAAAAATAACGATTCCGTTTCCGTTTCCGTTTTCCGTAAAATGTTTTTACTCTTTTTTTTTCGTTTCCGTTTACCGCGAGAAAAAATTCCCTTTCCGTTTCCATTTTCCGTATTTCTGGAAAATGCGTTTCATCCCATCACTGGCTGATACCATCTAATGGTTTCAGCATTTTATTTGATATCTAATGTATTTAGAAGCTTCTGAAACTTCAAATATCCCTTTCGTAATGTGAATTTTTCAGATACAATAAAAAACTAGCGATTGATTTGGCCGAAGGTTATGATATCTTGCGAGGAGACGGAACGCTTGCGACGATTGGAATTTTGGAAGATGGATTCTTTTTCGGTGTTTGGCATAACCGATTTCATGAAATTGATGGTCAAGAAATCTGGATTTCTCGCAAAACTGGTTTATTCTGATAGTGAGAGTTATAAATAAT</canonical>
            <polymorphic>CAAGTTTATGGAATTGTGTACCAATTTCGAGTTAATGGATGATCATTTTGTAACACCGTTCCGCTTCGCATCTTTTGTGGACAAATGGATCAGGAGCGATGACAAACATTTTGAGAATTGCCTAGTTACATGGACAAATATAACCGTCGATGATGTGGATTTCAGAAACTTTCCATTTATTCCTTTTGATAGAAGTCAAAGAAGCCAAACGTACAAGTGAGTCGTTTTATATAATGCCATATGAAAAATAACCACTGGTCTGAAATATTAGATTAGTACAAACGTTTTAGCAACCCGAATGTGTTCTTCATTCAACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTACATGTGAAATTCTATTTCCGTTTCCGTTTCCGTTTTCCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCGAAAMAAAACATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTTTCAAAAAAAAAATAACGATTCCGTTTCCGTTTCCGTTTTCCGTAAAATGTTTTTACTCTTTTTTTTTCGTTTCCGTTTACCGCGAGAAAAAATTCCCTTTCCGTTTCCATTTTCCGTATTTCTGGAAAATGCGTTTCATCCCATCACTGGCTGATACCATCTAATGGTTTCAGCATTTTATTTGATATCTAATGTATTTAGAAGCTTCTGAAACTTCAAATATCCCTTTCGTAATGTGAATTTTTCAGATACAATAAAAAACTAGCGATTGATTTGGCCGAAGGTTATGATATCTTGCGAGGAGACGGAACGCTTGCGACGATTGGAATTTTGGAAGATGGATTCTTTTTCGGTGTTTGGCATAACCGATTTCATGAAATTGATGGTCAAGAAATCTGGATTTCTCGCAAAACTGGTTTATTCTGATAGTGAGAGTTATAAATAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATAACCACTGGTCTGAAATA</pcr_primer_p1>
		<pcr_primer_p2>AATAAAATGCTGAAACCATTAGA</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>AAAATAACCACTGGTCTGAAATATTAGATTAGTACAAACGTTTTAGCAACCCGAATGTGTTCTTCATTCAACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTACATGTGAAATTCTATTTCCGTTTCCGTTTCCGTTTTCCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCGAAAAAAAACATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTTTCAAAAAAAAAATAACGATTCCGTTTCCGTTTCCGTTTTCCGTAAAATGTTTTTACTCTTTTTTTTTCGTTTCCGTTTACCGCGAGAAAAAATTCCCTTTCCGTTTCCATTTTCCGTATTTCTGGAAAATGCGTTTCATCCCATCACTGGCTGATACCATCTAATGGTTTCAGCATTTTATT</canonical_amplicon>
		<polymorphic_amplicon>AAAATAACCACTGGTCTGAAATATTAGATTAGTACAAACGTTTTAGCAACCCGAATGTGTTCTTCATTCAACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTACATGTGAAATTCTATTTCCGTTTCCGTTTCCGTTTTCCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCGAAAMAAAACATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTTTCAAAAAAAAAATAACGATTCCGTTTCCGTTTCCGTTTTCCGTAAAATGTTTTTACTCTTTTTTTTTCGTTTCCGTTTACCGCGAGAAAAAATTCCCTTTCCGTTTCCATTTTCCGTATTTCTGGAAAATGCGTTTCATCCCATCACTGGCTGATACCATCTAATGGTTTCAGCATTTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29412</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>304454</contig_pos>
        <strand></strand>
        <context>tcgaaamaaa[A/G]catggaaagt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCGAAAAAAA</left_flank>
        <right_flank>CATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATGGAATTGTGTACCAATTTCGAGTTAATGGATGATCATTTTGTAACACCGTTCCGCTTCGCATCTTTTGTGGACAAATGGATCAGGAGCGATGACAAACATTTTGAGAATTGCCTAGTTACATGGACAAATATAACCGTCGATGATGTGGATTTCAGAAACTTTCCATTTATTCCTTTTGATAGAAGTCAAAGAAGCCAAACGTACAAGTGAGTCGTTTTATATAATGCCATATGAAAAATAACCACTGGTCTGAAATATTAGATTAGTACAAACGTTTTAGCAACCCGAATGTGTTCTTCATTCAACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTACATGTGAAATTCTATTTCCGTTTCCGTTTCCGTTTTCCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCGAAAAAAAACATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTTTCAAAAAAAAAATAACGATTCCGTTTCCGTTTCCGTTTTCCGTAAAATGTTTTTACTCTTTTTTTTTCGTTTCCGTTTACCGCGAGAAAAAATTCCCTTTCCGTTTCCATTTTCCGTATTTCTGGAAAATGCGTTTCATCCCATCACTGGCTGATACCATCTAATGGTTTCAGCATTTTATTTGATATCTAATGTATTTAGAAGCTTCTGAAACTTCAAATATCCCTTTCGTAATGTGAATTTTTCAGATACAATAAAAAACTAGCGATTGATTTGGCCGAAGGTTATGATATCTTGCGAGGAGACGGAACGCTTGCGACGATTGGAATTTTGGAAGATGGATTCTTTTTCGGTGTTTGGCATAACCGATTTCATGAAATTGATGGTCAAGAAATCTGGATTTCTCGCAAAACTGGTTTATTCTGATAGTGAGAGTTATAAATAATACAT</canonical>
            <polymorphic>TTTATGGAATTGTGTACCAATTTCGAGTTAATGGATGATCATTTTGTAACACCGTTCCGCTTCGCATCTTTTGTGGACAAATGGATCAGGAGCGATGACAAACATTTTGAGAATTGCCTAGTTACATGGACAAATATAACCGTCGATGATGTGGATTTCAGAAACTTTCCATTTATTCCTTTTGATAGAAGTCAAAGAAGCCAAACGTACAAGTGAGTCGTTTTATATAATGCCATATGAAAAATAACCACTGGTCTGAAATATTAGATTAGTACAAACGTTTTAGCAACCCGAATGTGTTCTTCATTCAACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTACATGTGAAATTCTATTTCCGTTTCCGTTTCCGTTTTCCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCGAAAAAAARCATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTTTCAAAAAAAAAATAACGATTCCGTTTCCGTTTCCGTTTTCCGTAAAATGTTTTTACTCTTTTTTTTTCGTTTCCGTTTACCGCGAGAAAAAATTCCCTTTCCGTTTCCATTTTCCGTATTTCTGGAAAATGCGTTTCATCCCATCACTGGCTGATACCATCTAATGGTTTCAGCATTTTATTTGATATCTAATGTATTTAGAAGCTTCTGAAACTTCAAATATCCCTTTCGTAATGTGAATTTTTCAGATACAATAAAAAACTAGCGATTGATTTGGCCGAAGGTTATGATATCTTGCGAGGAGACGGAACGCTTGCGACGATTGGAATTTTGGAAGATGGATTCTTTTTCGGTGTTTGGCATAACCGATTTCATGAAATTGATGGTCAAGAAATCTGGATTTCTCGCAAAACTGGTTTATTCTGATAGTGAGAGTTATAAATAATACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATAACCACTGGTCTGAAATA</pcr_primer_p1>
		<pcr_primer_p2>AATAAAATGCTGAAACCATTAGA</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>AAAATAACCACTGGTCTGAAATATTAGATTAGTACAAACGTTTTAGCAACCCGAATGTGTTCTTCATTCAACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTACATGTGAAATTCTATTTCCGTTTCCGTTTCCGTTTTCCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCGAAAAAAAACATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTTTCAAAAAAAAAATAACGATTCCGTTTCCGTTTCCGTTTTCCGTAAAATGTTTTTACTCTTTTTTTTTCGTTTCCGTTTACCGCGAGAAAAAATTCCCTTTCCGTTTCCATTTTCCGTATTTCTGGAAAATGCGTTTCATCCCATCACTGGCTGATACCATCTAATGGTTTCAGCATTTTATT</canonical_amplicon>
		<polymorphic_amplicon>AAAATAACCACTGGTCTGAAATATTAGATTAGTACAAACGTTTTAGCAACCCGAATGTGTTCTTCATTCAACCTAGAGACTAGTGATGGGAGGAATTTCCGTTTGCATTTCCGTTGTCCGTTTTCCGCCCGGTTTTTAGAGCTTTTTTTCGTTTCCGTTTTCGTACATGTGAAATTCTATTTCCGTTTCCGTTTCCGTTTTCCGGAAAAATCGCCAATTTTTTCAGCGGAAACGGAAAATAATGTAGGCTCGAAAAAAARCATGGAAAGTGAGGCAAGTATAGCCGTCAAACGTTAAAAAGTGTTTATTTTCAAAAAAAAAATAACGATTCCGTTTCCGTTTCCGTTTTCCGTAAAATGTTTTTACTCTTTTTTTTTCGTTTCCGTTTACCGCGAGAAAAAATTCCCTTTCCGTTTCCATTTTCCGTATTTCTGGAAAATGCGTTTCATCCCATCACTGGCTGATACCATCTAATGGTTTCAGCATTTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29413</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>318731</contig_pos>
        <strand></strand>
        <context>TCCAATTAGA[A/G]GCTGGGCCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCACGTCGCGTTTGGAGAATCGTCAATTGCAGAAGCCCTCCAATTAGA</left_flank>
        <right_flank>GCTGGGCCTGAAAAATTCAGTGTGTTCTCGTTCAAAATTCATTAGAATCT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTCCGGAGGGTCCTTCTATTACAGGGGCCCTTCTATTTTTCCGGTCATTTTTCCCGAAAATTTTCATCGAAAAATTCGACGAATTTTCGTTCAAAAGTCATGAAAATCTGTTAATTTGACCAAAATTAATCTAGTTTTTTGAGCAAAAAGTAGTTTTTCAACAGATTTCTATTAAATTGTAGAATTCCCGGAATATTTTTCATTGAAAACGTACGGAATTTTTTTTATATTTCATGATTATTTTGAAGGGGGCCCTTCTATTAGGGGGGCCCTTCCAATACAGGTTTTACGGTAACCAATAGGATCGTTTTCTTGGGGAATCAGCTCCCTTTGGCGATTTGCCTTAGCAAGACCCAGGGAAGGATTGGACAAAAATTAAAGCAAAAATCATGTCACTCTGCTTCAAGATACCATAAAACCTCTATTAGAAGGGCCAGCTCTTCTATTGTTCCACGTCGCGTTTGGAGAATCGTCAATTGCAGAAGCCCTCCAATTAGAAGCTGGGCCTGAAAAATTCAGTGTGTTCTCGTTCAAAATTCATTAGAATCTATCGATTGATTTCACCAAAATTGAGCAAGAATATTTTCCATTGATAACATACGAACAACTTTTTTTTTGAATAAATGGGCCCACTATCAGAGGACCTTTCTAATACAGGTTTTAATTAGTTTTGAACAAGATCAATAAATAGCAAGACTAGGACACTAACAAATTGCCCATTTTTTGGCAGCTGTTAGACAACCTCATATCAATTTATGAGATAACCAACAAGCTAGTGCGCCTTCGGCGCGATTTGACTTAGTTTTGTCGCTCCGCCTATAGGTATATCAATTGTTCTTGAAGGGTCACGTAAATCTTTTTTATTTTTCAATTTTTCAAAAATCCACAGACTGATAGGGGGACCAACAGACGCCTCTAGCGTTTCATATCCAATAATATTATCCAATGCGACAAAAACAGATTACCGTGAAACCTGTGAAAGAGGGGCTCGCGCACTGC</canonical>
            <polymorphic>CCTCCGGAGGGTCCTTCTATTACAGGGGCCCTTCTATTTTTCCGGTCATTTTTCCCGAAAATTTTCATCGAAAAATTCGACGAATTTTCGTTCAAAAGTCATGAAAATCTGTTAATTTGACCAAAATTAATCTAGTTTTTTGAGCAAAAAGTAGTTTTTCAACAGATTTCTATTAAATTGTAGAATTCCCGGAATATTTTTCATTGAAAACGTACGGAATTTTTTTTATATTTCATGATTATTTTGAAGGGGGCCCTTCTATTAGGGGGGCCCTTCCAATACAGGTTTTACGGTAACCAATAGGATCGTTTTCTTGGGGAATCAGCTCCCTTTGGCGATTTGCCTTAGCAAGACCCAGGGAAGGATTGGACAAAAATTAAAGCAAAAATCATGTCACTCTGCTTCAAGATACCATAAAACCTCTATTAGAAGGGCCAGCTCTTCTATTGTTCCACGTCGCGTTTGGAGAATCGTCAATTGCAGAAGCCCTCCAATTAGARGCTGGGCCTGAAAAATTCAGTGTGTTCTCGTTCAAAATTCATTAGAATCTATCGATTGATTTCACCAAAATTGAGCAAGAATATTTTCCATTGATAACATACGAACAACTTTTTTTTTGAATAAATGGGCCCACTATCAGAGGACCTTTCTAATACAGGTTTTAATTAGTTTTGAACAAGATCAATAAATAGCAAGACTAGGACACTAACAAATTGCCCATTTTTTGGCAGCTGTTAGACAACCTCATATCAATTTATGAGATAACCAACAAGCTAGTGCGCCTTCGGCGCGATTTGACTTAGTTTTGTCGCTCCGCCTATAGGTATATCAATTGTTCTTGAAGGGTCACGTAAATCTTTTTTATTTTTCAATTTTTCAAAAATCCACAGACTGATAGGGGGACCAACAGACGCCTCTAGCGTTTCATATCCAATAATATTATCCAATGCGACAAAAACAGATTACCGTGAAACCTGTGAAAGAGGGGCTCGCGCACTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>325 230 227 113 63 42</canonical_bands>
                <polymorphic_bands>325 293 227 113 42</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>225 215 123 109 102 55 48 42 28 17 15 12 5 4</canonical_bands>
                <polymorphic_bands>225 215 123 109 102 55 48 42 28 20 17 12 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACAAAAATTAAAGCAAAAATCA</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGTTGTTCGTATGTTATCAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GACAAAAATTAAAGCAAAAATCATGTCACTCTGCTTCAAGATACCATAAAACCTCTATTAGAAGGGCCAGCTCTTCTATTGTTCCACGTCGCGTTTGGAGAATCGTCAATTGCAGAAGCCCTCCAATTAGAAGCTGGGCCTGAAAAATTCAGTGTGTTCTCGTTCAAAATTCATTAGAATCTATCGATTGATTTCACCAAAATTGAGCAAGAATATTTTCCATTGATAACATACGAACAACTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GACAAAAATTAAAGCAAAAATCATGTCACTCTGCTTCAAGATACCATAAAACCTCTATTAGAAGGGCCAGCTCTTCTATTGTTCCACGTCGCGTTTGGAGAATCGTCAATTGCAGAAGCCCTCCAATTAGARGCTGGGCCTGAAAAATTCAGTGTGTTCTCGTTCAAAATTCATTAGAATCTATCGATTGATTTCACCAAAATTGAGCAAGAATATTTTCCATTGATAACATACGAACAACTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29414</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>355404</contig_pos>
        <strand>+</strand>
        <context>AACAAAAATT[C/G]TACGTCATCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTGATATTTTGATACCTATTTTCAGACCAATTGTGTTGGAAACAAAAATT</left_flank>
        <right_flank>TACGTCATCGCCAGATGAATGTGTTCTTTCAAATACCATTTTTGCCACAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTATCCTTTAAATGAATTTTCGGCCACAAGGTTCATCGGCGTCGGACAAGAATGATAGCTCAGATGGTTTTTGGCTTGTAACTTAGTTCTTAGACAAGATAAAGTATTCCAAATAGTATAATTTTGTAGCTCTCGTTGAGTTCTATCATATCCATCTTAGTTGGTCCGAAAATATTGATTCTGAAAGGAAGTATGGCAAGGACCGCTTTCCATCGCTGTGTCTTGAAAGATACAAAAACGATATTCGGACAATCGGAAAACCCGACAGACAGCCAACAGGAAATTTCTCAATCCACGTGTCATATTAGTCGAAGAAGTACGAAAAATTCTAGAATTCGCCCTACTTATTGTTTCAGTGGGACCCCAAGATTGTTATGTCACATTATTATATCAACAACACAATTTTATTTTTGACCTGTTCTATTTTAGGCCCACCCTCTCTATTCTTTTGATATTTTGATACCTATTTTCAGACCAATTGTGTTGGAAACAAAAATTCTACGTCATCGCCAGATGAATGTGTTCTTTCAAATACCATTTTTGCCACAGATCGGGGTCGCTGCCGAGTGACCCGATCAACTGGTATGTACTGTTGTGTACACATAGTCTCCAGATGAGTTTTTCTGGTTCTAACAGAGAGTTTTTGCACCTTTGAACTAGGTGCCATCTCTAACAAAGATCAAAGTCACTTCCGATTCTCTATTTTTGGGTTCTCTTTCTGTTCTTTGAAGACGACGAAATCAAATCGAGTACATGCTTGTTTCGTCGCGTCTCAATGTGTCATCAGTGAGACTGAGAGAGTGTATGGGATGAGGAGACGCAGAGAGTGACTTCCGTTGATTTCGAAAAAAAACGAGAGGAGATTACTTTGATTGATATAGGAAGGAACATGGTGGTGTAAAAGGAATCAAGGACATAGCCGCCTGGGGGAATACCTTTTTTTGAAAAATAGCAACAAAACATTTTTTTATCATTTTGATCTAAAAAAATCGGAGCTGT</canonical>
            <polymorphic>GCTATCCTTTAAATGAATTTTCGGCCACAAGGTTCATCGGCGTCGGACAAGAATGATAGCTCAGATGGTTTTTGGCTTGTAACTTAGTTCTTAGACAAGATAAAGTATTCCAAATAGTATAATTTTGTAGCTCTCGTTGAGTTCTATCATATCCATCTTAGTTGGTCCGAAAATATTGATTCTGAAAGGAAGTATGGCAAGGACCGCTTTCCATCGCTGTGTCTTGAAAGATACAAAAACGATATTCGGACAATCGGAAAACCCGACAGACAGCCAACAGGAAATTTCTCAATCCACGTGTCATATTAGTCGAAGAAGTACGAAAAATTCTAGAATTCGCCCTACTTATTGTTTCAGTGGGACCCCAAGATTGTTATGTCACATTATTATATCAACAACACAATTTTATTTTTGACCTGTTCTATTTTAGGCCCACCCTCTCTATTCTTTTGATATTTTGATACCTATTTTCAGACCAATTGTGTTGGAAACAAAAATTSTACGTCATCGCCAGATGAATGTGTTCTTTCAAATACCATTTTTGCCACAGATCGGGGTCGCTGCCGAGTGACCCGATCAACTGGTATGTACTGTTGTGTACACATAGTCTCCAGATGAGTTTTTCTGGTTCTAACAGAGAGTTTTTGCACCTTTGAACTAGGTGCCATCTCTAACAAAGATCAAAGTCACTTCCGATTCTCTATTTTTGGGTTCTCTTTCTGTTCTTTGAAGACGACGAAATCAAATCGAGTACATGCTTGTTTCGTCGCGTCTCAATGTGTCATCAGTGAGACTGAGAGAGTGTATGGGATGAGGAGACGCAGAGAGTGACTTCCGTTGATTTCGAAAAAAAACGAGAGGAGATTACTTTGATTGATATAGGAAGGAACATGGTGGTGTAAAAGGAATCAAGGACATAGCCGCCTGGGGGAATACCTTTTTTTGAAAAATAGCAACAAAACATTTTTTTATCATTTTGATCTAAAAAAATCGGAGCTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>505 267 162 43 15 8</canonical_bands>
                <polymorphic_bands>667 267 43 15 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACAATTTTATTTTTGACCTGTT</pcr_primer_p1>
		<pcr_primer_p2>GCAAAAACTCTCTGTTAGAACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACAATTTTATTTTTGACCTGTTCTATTTTAGGCCCACCCTCTCTATTCTTTTGATATTTTGATACCTATTTTCAGACCAATTGTGTTGGAAACAAAAATTCTACGTCATCGCCAGATGAATGTGTTCTTTCAAATACCATTTTTGCCACAGATCGGGGTCGCTGCCGAGTGACCCGATCAACTGGTATGTACTGTTGTGTACACATAGTCTCCAGATGAGTTTTTCTGGTTCTAACAGAGAGTTTTTGC</canonical_amplicon>
		<polymorphic_amplicon>CACAATTTTATTTTTGACCTGTTCTATTTTAGGCCCACCCTCTCTATTCTTTTGATATTTTGATACCTATTTTCAGACCAATTGTGTTGGAAACAAAAATTSTACGTCATCGCCAGATGAATGTGTTCTTTCAAATACCATTTTTGCCACAGATCGGGGTCGCTGCCGAGTGACCCGATCAACTGGTATGTACTGTTGTGTACACATAGTCTCCAGATGAGTTTTTCTGGTTCTAACAGAGAGTTTTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29415</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>363377</contig_pos>
        <strand>+</strand>
        <context>AGATATCCAT[A/G]TCTCCACCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGATAACCTGCACTTCTGGAGACGGCGATCTGCTTCTCGAGATATCCAT</left_flank>
        <right_flank>TCTCCACCAACGTGTTCTACAGCGAGTCTTGGCTGAAACAGCTTTAATTT</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAAAATCGGTGGGAGCACGATAGTCTTCTTTTCAAGGGGAGACGCTTCAGTGATAGTCATATTCATCCTTCTAACCACCGGCGCGTTACCACGGCTTACTTGAAGCTGATCGTGCAGTGTGTCCACGTAGTGCATCAAGAAGTCAAAGTAGTTCTCACTGGTGTGCACGATCCCGTCGCGTATCTGTGGCGGTGGATCCTCATATCGGCTATTGACTCTCTCCCGATCATAGTCATCCCGATCCATTCTCAATGGGTTTGGAGCTCTTCGATGATCACGGTCTCCACGATCGCTACGAGAAGGCGATCTTGACCTGGAGCGCGATCTTCTGCGACTGCTATCGCCACGATACTTCTTTCGATCATCTCGAACCGAGCGCGCTGAGATAGCTAAAAATTATTTATTTATGAACCTAAATCGTTTATAGAGCTCTTTGAGCTGTTACCCTTGATAACCTGCACTTCTGGAGACGGCGATCTGCTTCTCGAGATATCCATGTCTCCACCAACGTGTTCTACAGCGAGTCTTGGCTGAAACAGCTTTAATTTAGGACTATTTTTCAGCCTAACTATCTTACGTTTCTCATCAGCGGTCGATGCCCATCAACGCGTCGCAAGTCTTCTCCCAATGGTCCTTTATCGAATCCACGTCTTCTCGAAGGATCCATGTTGTAGTTATTATAGGCTGATTCATAACCGTTGGCATATGATGCGACTTGCGGAGGAGCGTTGCCAAGAAGCGGTTGACGGATAGTGGGCGCCGGAAGTATGCGAGCACTTCTCTCGTATCGCGGGTCACTGAAATTGTGTTGAAATTTAGAATTTGGGAGTATTAATTTTGAAACTCACAGCGCCGAGCCTTGAGGCGGGATTATTCGATTCGGAACTTGGTCGTAATCTGCTCTTCTCATTATTATTATTATTATGTGTCTGAAAATAGGAGAATTCAGTAAGAGATAGAAAGAGGAAAAGCTGCAGAAAAGGGAAATCGATAAAAGT</canonical>
            <polymorphic>TCGAAAATCGGTGGGAGCACGATAGTCTTCTTTTCAAGGGGAGACGCTTCAGTGATAGTCATATTCATCCTTCTAACCACCGGCGCGTTACCACGGCTTACTTGAAGCTGATCGTGCAGTGTGTCCACGTAGTGCATCAAGAAGTCAAAGTAGTTCTCACTGGTGTGCACGATCCCGTCGCGTATCTGTGGCGGTGGATCCTCATATCGGCTATTGACTCTCTCCCGATCATAGTCATCCCGATCCATTCTCAATGGGTTTGGAGCTCTTCGATGATCACGGTCTCCACGATCGCTACGAGAAGGCGATCTTGACCTGGAGCGCGATCTTCTGCGACTGCTATCGCCACGATACTTCTTTCGATCATCTCGAACCGAGCGCGCTGAGATAGCTAAAAATTATTTATTTATGAACCTAAATCGTTTATAGAGCTCTTTGAGCTGTTACCCTTGATAACCTGCACTTCTGGAGACGGCGATCTGCTTCTCGAGATATCCATRTCTCCACCAACGTGTTCTACAGCGAGTCTTGGCTGAAACAGCTTTAATTTAGGACTATTTTTCAGCCTAACTATCTTACGTTTCTCATCAGCGGTCGATGCCCATCAACGCGTCGCAAGTCTTCTCCCAATGGTCCTTTATCGAATCCACGTCTTCTCGAAGGATCCATGTTGTAGTTATTATAGGCTGATTCATAACCGTTGGCATATGATGCGACTTGCGGAGGAGCGTTGCCAAGAAGCGGTTGACGGATAGTGGGCGCCGGAAGTATGCGAGCACTTCTCTCGTATCGCGGGTCACTGAAATTGTGTTGAAATTTAGAATTTGGGAGTATTAATTTTGAAACTCACAGCGCCGAGCCTTGAGGCGGGATTATTCGATTCGGAACTTGGTCGTAATCTGCTCTTCTCATTATTATTATTATTATGTGTCTGAAAATAGGAGAATTCAGTAAGAGATAGAAAGAGGAAAAGCTGCAGAAAAGGGAAATCGATAAAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>497 333 170</canonical_bands>
                <polymorphic_bands>667 333</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAACCTAAATCGTTTATAGAGC</pcr_primer_p1>
		<pcr_primer_p2>GAGAAGACGTGGATTCGATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAACCTAAATCGTTTATAGAGCTCTTTGAGCTGTTACCCTTGATAACCTGCACTTCTGGAGACGGCGATCTGCTTCTCGAGATATCCATGTCTCCACCAACGTGTTCTACAGCGAGTCTTGGCTGAAACAGCTTTAATTTAGGACTATTTTTCAGCCTAACTATCTTACGTTTCTCATCAGCGGTCGATGCCCATCAACGCGTCGCAAGTCTTCTCCCAATGGTCCTTTATCGAATCCACGTCTTCTC</canonical_amplicon>
		<polymorphic_amplicon>TGAACCTAAATCGTTTATAGAGCTCTTTGAGCTGTTACCCTTGATAACCTGCACTTCTGGAGACGGCGATCTGCTTCTCGAGATATCCATRTCTCCACCAACGTGTTCTACAGCGAGTCTTGGCTGAAACAGCTTTAATTTAGGACTATTTTTCAGCCTAACTATCTTACGTTTCTCATCAGCGGTCGATGCCCATCAACGCGTCGCAAGTCTTCTCCCAATGGTCCTTTATCGAATCCACGTCTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29416</snp_id>
        <super_contig>c004600615.Contig6</super_contig>
        <contig_pos>368866</contig_pos>
        <strand>+</strand>
        <context>CTTTCATCCG[A/G]TTTTTTTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCATTCTCTAGAACACGAGGTCCCCCATGTGATATGAACTTTCATCCG</left_flank>
        <right_flank>TTTTTTTTCGATGCGAAACCAGATCAATCAACAAGGCCAAACCGATATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCAAAAGCCAATTCAGGAGCATCTACACCAGCAAGAAAGAATTCCAATGGAAGCCAATGTGCTTGTCATAAGCATTCAATCAATATCACAGTGGGAGCGGTTAGTTTTAAAATGTGTAAAAATTAATTTTGGAAAATTATTTTTTTAGGACGAAGTACCAACTGTTCTAGCAACTCCACCCAACGAAATGACCTCCCAGTATATGCCACACTTCCTGAAAAACACCCAATCCCCATGCATCTCTCGTGTCGTCAGTTCCAGTTCCTTGAAAGAAAAGCTCAACAAGATCAAGAGAACTGCGAGCTCGGATAGCGAGACGGATCTTCCAGAGAAGAAATGCTCAGTTGCTTCGTATCGTGTTGTGACACATTAGGCACCATCTTTTTAGTCTGACTCTATCCGATCTCTAATGAATTTTTGATTTTTTACATTGACCATGCTTTTTGATTCCATTCTCTAGAACACGAGGTCCCCCATGTGATATGAACTTTCATCCGTTTTTTTTTCGATGCGAAACCAGATCAATCAACAAGGCCAAACCGATATAAAAATTCCTTTTATCTTCTTTCTTTTTCTGTCAAATTATCATTTGACCATACTGATTAGAATGTGATATCGGGTGTCCTCTCACAACCACGTGATGTGAAGAATTGAAGAAAAAAGTCAGAAGAAGAAGAAGAAGGAAGAAGAAATATCGTAGGGTTCAGAAATTTCGATGAAAAAGTAGGAGGTGGAGAAGGAAATTCGTGGAAAACAAGTCATTTGGAAAGGAGAATAGTGGAAAGTCAGAGTCATGGAACCTGAAAGTTGTTGAAATGTTTTTTGCAGTCTGAATAGGGTATTTTTTTAATAGAAGCCCGCCAAACTCTGAGACAATTTATCTCGGTTCCTATGACAGATATCAAAAAAACTTCAAGTTTCAGTTTTTTTTTTAATTTAAAGATGCCCTTACCAAAATAATCATGTAATTGAGTGGCACTAATGTATCCTCGGATCAG</canonical>
            <polymorphic>ATTCAAAAGCCAATTCAGGAGCATCTACACCAGCAAGAAAGAATTCCAATGGAAGCCAATGTGCTTGTCATAAGCATTCAATCAATATCACAGTGGGAGCGGTTAGTTTTAAAATGTGTAAAAATTAATTTTGGAAAATTATTTTTTTAGGACGAAGTACCAACTGTTCTAGCAACTCCACCCAACGAAATGACCTCCCAGTATATGCCACACTTCCTGAAAAACACCCAATCCCCATGCATCTCTCGTGTCGTCAGTTCCAGTTCCTTGAAAGAAAAGCTCAACAAGATCAAGAGAACTGCGAGCTCGGATAGCGAGACGGATCTTCCAGAGAAGAAATGCTCAGTTGCTTCGTATCGTGTTGTGACACATTAGGCACCATCTTTTTAGTCTGACTCTATCCGATCTCTAATGAATTTTTGATTTTTTACATTGACCATGCTTTTTGATTCCATTCTCTAGAACACGAGGTCCCCCATGTGATATGAACTTTCATCCGRTTTTTTTTCGATGCGAAACCAGATCAATCAACAAGGCCAAACCGATATAAAAATTCCTTTTATCTTCTTTCTTTTTCTGTCAAATTATCATTTGACCATACTGATTAGAATGTGATATCGGGTGTCCTCTCACAACCACGTGATGTGAAGAATTGAAGAAAAAAGTCAGAAGAAGAAGAAGAAGGAAGAAGAAATATCGTAGGGTTCAGAAATTTCGATGAAAAAGTAGGAGGTGGAGAAGGAAATTCGTGGAAAACAAGTCATTTGGAAAGGAGAATAGTGGAAAGTCAGAGTCATGGAACCTGAAAGTTGTTGAAATGTTTTTTGCAGTCTGAATAGGGTATTTTTTTAATAGAAGCCCGCCAAACTCTGAGACAATTTATCTCGGTTCCTATGACAGATATCAAAAAAACTTCAAGTTTCAGTTTTTTTTTTAATTTAAAGATGCCCTTACCAAAATAATCATGTAATTGAGTGGCACTAATGTATCCTCGGATCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTAGGCACCATCTTTTTAGTCT</pcr_primer_p1>
		<pcr_primer_p2>CACATTCTAATCAGTATGGTCAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATTAGGCACCATCTTTTTAGTCTGACTCTATCCGATCTCTAATGAATTTTTGATTTTTTACATTGACCATGCTTTTTGATTCCATTCTCTAGAACACGAGGTCCCCCATGTGATATGAACTTTCATCCGTTTTTTTTTCGATGCGAAACCAGATCAATCAACAAGGCCAAACCGATATAAAAATTCCTTTTATCTTCTTTCTTTTTCTGTCAAATTATCATTTGACCATACTGATTAGAATGTG</canonical_amplicon>
		<polymorphic_amplicon>ATTAGGCACCATCTTTTTAGTCTGACTCTATCCGATCTCTAATGAATTTTTGATTTTTTACATTGACCATGCTTTTTGATTCCATTCTCTAGAACACGAGGTCCCCCATGTGATATGAACTTTCATCCGRTTTTTTTTCGATGCGAAACCAGATCAATCAACAAGGCCAAACCGATATAAAAATTCCTTTTATCTTCTTTCTTTTTCTGTCAAATTATCATTTGACCATACTGATTAGAATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29417</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>7471</contig_pos>
        <strand>+</strand>
        <context>CAGTTTTTCT[A/T]TCTAAATAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGGCCTTTTTGATTTTTCTCGCTTCTTTCTCGAAAAATATCAGTTTTTCT</left_flank>
        <right_flank>TCTAAATAATTATTTTTCCAGGTAAAGAACTTTCGTCCAGCCATGTACTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTTTAAAATTGGAAAAATCACAAAAATTCGAAAAAAAACACGAAATTTATAGGTTTTAGGGCGATTTTCAAGAAAATTTTACCTAAAAATCAAATATTTTCACCTTTTTTCACTATAGAACTTCAAAAATCCCGAAAAAACGCTGAAAATCGATGAAATCGGCGGAGTGACATAACGAGAATCTTGGCAACGAGCCACGCTCCGCCCACCCACCGTACTCATCGTCGCGGCGAGACCCGCTGCGACCAGCTGCCCGTAGAGCTGCCCGTCGTAGATGGGCGGCCATCGCTTGTCTCCGCGTTTCCGACTAAAATACCGCTAAAAATCACAGAACTCTCAATTTTTCCCCATTTTTCGCTGAAAATCCCAAATTTGAGCTCGAATCTTGCTCATTTTCAGTATAAAACCCTGGTTTTAGCGACTTCAGAGGAATTTTTCAATGAAAATGGGCCTTTTTGATTTTTCTCGCTTCTTTCTCGAAAAATATCAGTTTTTCTTTCTAAATAATTATTTTTCCAGGTAAAGAACTTTCGTCCAGCCATGTACTGCCAGCGCCTTGCTCTCCCACTCACCCGCTCCCTCCTCGTAAGTTTGAAATTTGCAGAACTCAGATAATTGTGGCGGAAGATCAACGATTTGGAGAATTGGCGGAAGCCCCTTGGAGTCATTTCGTGTACAAGCGGTTTCCACGATTCTCCAATCAAGTTTTCTCCGCTGATCCAAAATTGGGGGACTAGAAACATTTTCTAGTTAAAAAAAAATCATAACTTCCAAACTTCATTTTTACAGGCCTCGAGAGCTCCACTCGCTCTCCGCATGGAGAACGCCGTCGCTGCTCGCATGATCAGCACCACCGTTGCCCGCAAGGACATCGACTCTGCTGCCAAGTACATCGGAGCTGGAGCCGCCACCGTCGGAGTCGCTGGATCTGGAGCTGGTATCGGAAACGTTTTCGGAGCCCTCGTCATCGGATACGCCCGTAACCCATCTCTCAAGCA</canonical>
            <polymorphic>AGCTTTAAAATTGGAAAAATCACAAAAATTCGAAAAAAAACACGAAATTTATAGGTTTTAGGGCGATTTTCAAGAAAATTTTACCTAAAAATCAAATATTTTCACCTTTTTTCACTATAGAACTTCAAAAATCCCGAAAAAACGCTGAAAATCGATGAAATCGGCGGAGTGACATAACGAGAATCTTGGCAACGAGCCACGCTCCGCCCACCCACCGTACTCATCGTCGCGGCGAGACCCGCTGCGACCAGCTGCCCGTAGAGCTGCCCGTCGTAGATGGGCGGCCATCGCTTGTCTCCGCGTTTCCGACTAAAATACCGCTAAAAATCACAGAACTCTCAATTTTTCCCCATTTTTCGCTGAAAATCCCAAATTTGAGCTCGAATCTTGCTCATTTTCAGTATAAAACCCTGGTTTTAGCGACTTCAGAGGAATTTTTCAATGAAAATGGGCCTTTTTGATTTTTCTCGCTTCTTTCTCGAAAAATATCAGTTTTTCTWTCTAAATAATTATTTTTCCAGGTAAAGAACTTTCGTCCAGCCATGTACTGCCAGCGCCTTGCTCTCCCACTCACCCGCTCCCTCCTCGTAAGTTTGAAATTTGCAGAACTCAGATAATTGTGGCGGAAGATCAACGATTTGGAGAATTGGCGGAAGCCCCTTGGAGTCATTTCGTGTACAAGCGGTTTCCACGATTCTCCAATCAAGTTTTCTCCGCTGATCCAAAATTGGGGGACTAGAAACATTTTCTAGTTAAAAAAAAATCATAACTTCCAAACTTCATTTTTACAGGCCTCGAGAGCTCCACTCGCTCTCCGCATGGAGAACGCCGTCGCTGCTCGCATGATCAGCACCACCGTTGCCCGCAAGGACATCGACTCTGCTGCCAAGTACATCGGAGCTGGAGCCGCCACCGTCGGAGTCGCTGGATCTGGAGCTGGTATCGGAAACGTTTTCGGAGCCCTCGTCATCGGATACGCCCGTAACCCATCTCTCAAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATCTTGCTCATTTTCAGTATAA</pcr_primer_p1>
		<pcr_primer_p2>GCCACAATTATCTGAGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GAATCTTGCTCATTTTCAGTATAAAACCCTGGTTTTAGCGACTTCAGAGGAATTTTTCAATGAAAATGGGCCTTTTTGATTTTTCTCGCTTCTTTCTCGAAAAATATCAGTTTTTCTTTCTAAATAATTATTTTTCCAGGTAAAGAACTTTCGTCCAGCCATGTACTGCCAGCGCCTTGCTCTCCCACTCACCCGCTCCCTCCTCGTAAGTTTGAAATTTGCAGAACTCAGATAATTGTGGC</canonical_amplicon>
		<polymorphic_amplicon>GAATCTTGCTCATTTTCAGTATAAAACCCTGGTTTTAGCGACTTCAGAGGAATTTTTCAATGAAAATGGGCCTTTTTGATTTTTCTCGCTTCTTTCTCGAAAAATATCAGTTTTTCTWTCTAAATAATTATTTTTCCAGGTAAAGAACTTTCGTCCAGCCATGTACTGCCAGCGCCTTGCTCTCCCACTCACCCGCTCCCTCCTCGTAAGTTTGAAATTTGCAGAACTCAGATAATTGTGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29423</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>30347</contig_pos>
        <strand>+</strand>
        <context>CAAATTTTTG[A/T]AAAAAAAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCTCGCGAATTTCCGCGATTTTTGGGGATTCTAAAATTCCAAATTTTTG</left_flank>
        <right_flank>AAAAAAAATCTATTTTTTTAACATTACCAATCTGAATCGCCGTTTCCAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTGTATCATTTATAGGGTTACTGTAGGCACAGTAATCCAAGGAGTACTGTAACATGATTACTGTATTTATGGTAGTTACAGTAATCTTCTTGTTACAGAAATTGATTTTTCGATTTTCGAACATTTTTGGGGTTACTGTAGGTACAGTGATCTTCCAATTTGATTCAATTTGGTTACCGTAGGTCTTCATTTTACACTAACACTGGCCAAACTTGGATTACTGTATTTTCCCTAAATAGGGGAATACTGTAGCTTCTCCGAAATTTAAAAACTTCGATTTTTCAAGGTTTTGAGTTACTATACTTTTTAGGGATTACTGTAGCTTTTTTTAAAAAATTGTGAAATTTCAATTTTTCGGATTACCGTACCCGATAAATCCTTTCCAAATGCCTCCTCTGCTCAATCGCCACGTGGAAATCGTCCAAAATTTCAGCAATTTCAGCCAAATTCTCGCGAATTTCCGCGATTTTTGGGGATTCTAAAATTCCAAATTTTTGAAAAAAAAATCTATTTTTTTAACATTACCAATCTGAATCGCCGTTTCCAACTGCTTCTTCAAAAACCCCATCGATTGCTCATACTTTTCTAAACTACAGTATGCCGATGCAAGTGATCCATATACTGATTCCAGCAGTTTGATTGATTTCAAATCAAGGTCCAAGGAGAATTGCAGGATTGTTAGGAAACTGAATTTTTAAAGAATTGTGGCGTTTCTTAAGACTCTTTTAAGACCTTTCCAGGCATTTTTAGGCCTTTTCTGGGCTTTTTAGGCCTCAGAATGGTCGAGAAAAGTCATTTTGGCTGTTTTAAGACACTTTAAGCCTAAAATAAGTCAAAAGTCATTTTCAGCAAGTTTTTGCCGTTTAAAAGGAATTTTAGGCTTAAATTAAGTCTAGAAAAGTCATTTTAGCTGTTCTGTAGATCGCTTAGAGGCATTTTGAGCCTAGAAAATGTCTGGAAAGGTCATTTCAGATGTTTTGGCGTTTTAAGGCATTTCA</canonical>
            <polymorphic>TACTGTATCATTTATAGGGTTACTGTAGGCACAGTAATCCAAGGAGTACTGTAACATGATTACTGTATTTATGGTAGTTACAGTAATCTTCTTGTTACAGAAATTGATTTTTCGATTTTCGAACATTTTTGGGGTTACTGTAGGTACAGTGATCTTCCAATTTGATTCAATTTGGTTACCGTAGGTCTTCATTTTACACTAACACTGGCCAAACTTGGATTACTGTATTTTCCCTAAATAGGGGAATACTGTAGCTTCTCCGAAATTTAAAAACTTCGATTTTTCAAGGTTTTGAGTTACTATACTTTTTAGGGATTACTGTAGCTTTTTTTAAAAAATTGTGAAATTTCAATTTTTCGGATTACCGTACCCGATAAATCCTTTCCAAATGCCTCCTCTGCTCAATCGCCACGTGGAAATCGTCCAAAATTTCAGCAATTTCAGCCAAATTCTCGCGAATTTCCGCGATTTTTGGGGATTCTAAAATTCCAAATTTTTGWAAAAAAAATCTATTTTTTTAACATTACCAATCTGAATCGCCGTTTCCAACTGCTTCTTCAAAAACCCCATCGATTGCTCATACTTTTCTAAACTACAGTATGCCGATGCAAGTGATCCATATACTGATTCCAGCAGTTTGATTGATTTCAAATCAAGGTCCAAGGAGAATTGCAGGATTGTTAGGAAACTGAATTTTTAAAGAATTGTGGCGTTTCTTAAGACTCTTTTAAGACCTTTCCAGGCATTTTTAGGCCTTTTCTGGGCTTTTTAGGCCTCAGAATGGTCGAGAAAAGTCATTTTGGCTGTTTTAAGACACTTTAAGCCTAAAATAAGTCAAAAGTCATTTTCAGCAAGTTTTTGCCGTTTAAAAGGAATTTTAGGCTTAAATTAAGTCTAGAAAAGTCATTTTAGCTGTTCTGTAGATCGCTTAGAGGCATTTTGAGCCTAGAAAATGTCTGGAAAGGTCATTTCAGATGTTTTGGCGTTTTAAGGCATTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACCGTACCCGATAAATCCT</pcr_primer_p1>
		<pcr_primer_p2>CGGCATACTGTAGTTTAGAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TACCGTACCCGATAAATCCTTTCCAAATGCCTCCTCTGCTCAATCGCCACGTGGAAATCGTCCAAAATTTCAGCAATTTCAGCCAAATTCTCGCGAATTTCCGCGATTTTTGGGGATTCTAAAATTCCAAATTTTTGAAAAAAAAATCTATTTTTTTAACATTACCAATCTGAATCGCCGTTTCCAACTGCTTCTTCAAAAACCCCATCGATTGCTCATACTTTTCTAAACTACAGTATGCCG</canonical_amplicon>
		<polymorphic_amplicon>TACCGTACCCGATAAATCCTTTCCAAATGCCTCCTCTGCTCAATCGCCACGTGGAAATCGTCCAAAATTTCAGCAATTTCAGCCAAATTCTCGCGAATTTCCGCGATTTTTGGGGATTCTAAAATTCCAAATTTTTGWAAAAAAAATCTATTTTTTTAACATTACCAATCTGAATCGCCGTTTCCAACTGCTTCTTCAAAAACCCCATCGATTGCTCATACTTTTCTAAACTACAGTATGCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29424</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>30708</contig_pos>
        <strand></strand>
        <context>gcaagttttt[G/T]ccgtttaaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGACACTTTAAGCCTAAAATAAGTCAAAAGTCATTTTCAGCAAGTTTTT</left_flank>
        <right_flank>CCGTTTAAAAGGAATTTTAGGCTTAAATTAAGTCTAGAAAAGTCATTTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTACCGTACCCGATAAATCCTTTCCAAATGCCTCCTCTGCTCAATCGCCACGTGGAAATCGTCCAAAATTTCAGCAATTTCAGCCAAATTCTCGCGAATTTCCGCGATTTTTGGGGATTCTAAAATTCCAAATTTTTGAAAAAAAAATCTATTTTTTTAACATTACCAATCTGAATCGCCGTTTCCAACTGCTTCTTCAAAAACCCCATCGATTGCTCATACTTTTCTAAACTACAGTATGCCGATGCAAGTGATCCATATACTGATTCCAGCAGTTTGATTGATTTCAAATCAAGGTCCAAGGAGAATTGCAGGATTGTTAGGAAACTGAATTTTTAAAGAATTGTGGCGTTTCTTAAGACTCTTTTAAGACCTTTCCAGGCATTTTTAGGCCTTTTCTGGGCTTTTTAGGCCTCAGAATGGTCGAGAAAAGTCATTTTGGCTGTTTTAAGACACTTTAAGCCTAAAATAAGTCAAAAGTCATTTTCAGCAAGTTTTTGCCGTTTAAAAGGAATTTTAGGCTTAAATTAAGTCTAGAAAAGTCATTTTAGCTGTTCTGTAGATCGCTTAGAGGCATTTTGAGCCTAGAAAATGTCTGGAAAGGTCATTTCAGATGTTTTGGCGTTTTAAGGCATTTCAAGCCTAAAAGTAGCCAAAGAAAGTAATTTTTGGGCATTTTAGACCTAAAAAATTAAAAATTTACCCTCAAAATTCGCTTTTCCATCTCTGGAATCCGCTAGAATCGTTTGTCCAAGTGTTGCCAGAATTGTTGGAACATCTTCATCCAATTTCAGCACTTTCAAATTTTCCCAAGGGAATTTGCACCCGTAAAATGAGAAAATCGCCTCTTTGAGACTTTTCAGAATTTGAAAATTCGTAGAATCCAGTCTGATTCCATTGGAATACGCTAGAATCGATTCGAGCACTCTTTCAGCGTGTTTCAGGGATTCACCTCTTCGATAGTGTGCTTTTGCCCATGTTGGACACAGCCTAACCGCGA</canonical>
            <polymorphic>TTACCGTACCCGATAAATCCTTTCCAAATGCCTCCTCTGCTCAATCGCCACGTGGAAATCGTCCAAAATTTCAGCAATTTCAGCCAAATTCTCGCGAATTTCCGCGATTTTTGGGGATTCTAAAATTCCAAATTTTTGAAAAAAAAATCTATTTTTTTAACATTACCAATCTGAATCGCCGTTTCCAACTGCTTCTTCAAAAACCCCATCGATTGCTCATACTTTTCTAAACTACAGTATGCCGATGCAAGTGATCCATATACTGATTCCAGCAGTTTGATTGATTTCAAATCAAGGTCCAAGGAGAATTGCAGGATTGTTAGGAAACTGAATTTTTAAAGAATTGTGGCGTTTCTTAAGACTCTTTTAAGACCTTTCCAGGCATTTTTAGGCCTTTTCTGGGCTTTTTAGGCCTCAGAATGGTCGAGAAAAGTCATTTTGGCTGTTTTAAGACACTTTAAGCCTAAAATAAGTCAAAAGTCATTTTCAGCAAGTTTTTKCCGTTTAAAAGGAATTTTAGGCTTAAATTAAGTCTAGAAAAGTCATTTTAGCTGTTCTGTAGATCGCTTAGAGGCATTTTGAGCCTAGAAAATGTCTGGAAAGGTCATTTCAGATGTTTTGGCGTTTTAAGGCATTTCAAGCCTAAAAGTAGCCAAAGAAAGTAATTTTTGGGCATTTTAGACCTAAAAAATTAAAAATTTACCCTCAAAATTCGCTTTTCCATCTCTGGAATCCGCTAGAATCGTTTGTCCAAGTGTTGCCAGAATTGTTGGAACATCTTCATCCAATTTCAGCACTTTCAAATTTTCCCAAGGGAATTTGCACCCGTAAAATGAGAAAATCGCCTCTTTGAGACTTTTCAGAATTTGAAAATTCGTAGAATCCAGTCTGATTCCATTGGAATACGCTAGAATCGATTCGAGCACTCTTTCAGCGTGTTTCAGGGATTCACCTCTTCGATAGTGTGCTTTTGCCCATGTTGGACACAGCCTAACCGCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGCAGGATTGTTAGGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TCTACAGAACAGCTAAAATGACTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TTGCAGGATTGTTAGGAAACTGAATTTTTAAAGAATTGTGGCGTTTCTTAAGACTCTTTTAAGACCTTTCCAGGCATTTTTAGGCCTTTTCTGGGCTTTTTAGGCCTCAGAATGGTCGAGAAAAGTCATTTTGGCTGTTTTAAGACACTTTAAGCCTAAAATAAGTCAAAAGTCATTTTCAGCAAGTTTTTGCCGTTTAAAAGGAATTTTAGGCTTAAATTAAGTCTAGAAAAGTCATTTTAGCTGTTCTGTAGA</canonical_amplicon>
		<polymorphic_amplicon>TTGCAGGATTGTTAGGAAACTGAATTTTTAAAGAATTGTGGCGTTTCTTAAGACTCTTTTAAGACCTTTCCAGGCATTTTTAGGCCTTTTCTGGGCTTTTTAGGCCTCAGAATGGTCGAGAAAAGTCATTTTGGCTGTTTTAAGACACTTTAAGCCTAAAATAAGTCAAAAGTCATTTTCAGCAAGTTTTTKCCGTTTAAAAGGAATTTTAGGCTTAAATTAAGTCTAGAAAAGTCATTTTAGCTGTTCTGTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29425</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>30739</contig_pos>
        <strand></strand>
        <context>gcttaaatta[A/G]gtctaGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATTTTCAGCAAGTTTTTGCCGTTTAAAAGGAATTTTAGGCTTAAATTA</left_flank>
        <right_flank>GTCTAGAAAAGTCATTTTAGCTGTTCTGTAGATCGCTTAGAGGCATTTTG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCTCTGCTCAATCGCCACGTGGAAATCGTCCAAAATTTCAGCAATTTCAGCCAAATTCTCGCGAATTTCCGCGATTTTTGGGGATTCTAAAATTCCAAATTTTTGAAAAAAAAATCTATTTTTTTAACATTACCAATCTGAATCGCCGTTTCCAACTGCTTCTTCAAAAACCCCATCGATTGCTCATACTTTTCTAAACTACAGTATGCCGATGCAAGTGATCCATATACTGATTCCAGCAGTTTGATTGATTTCAAATCAAGGTCCAAGGAGAATTGCAGGATTGTTAGGAAACTGAATTTTTAAAGAATTGTGGCGTTTCTTAAGACTCTTTTAAGACCTTTCCAGGCATTTTTAGGCCTTTTCTGGGCTTTTTAGGCCTCAGAATGGTCGAGAAAAGTCATTTTGGCTGTTTTAAGACACTTTAAGCCTAAAATAAGTCAAAAGTCATTTTCAGCAAGTTTTTGCCGTTTAAAAGGAATTTTAGGCTTAAATTAAGTCTAGAAAAGTCATTTTAGCTGTTCTGTAGATCGCTTAGAGGCATTTTGAGCCTAGAAAATGTCTGGAAAGGTCATTTCAGATGTTTTGGCGTTTTAAGGCATTTCAAGCCTAAAAGTAGCCAAAGAAAGTAATTTTTGGGCATTTTAGACCTAAAAAATTAAAAATTTACCCTCAAAATTCGCTTTTCCATCTCTGGAATCCGCTAGAATCGTTTGTCCAAGTGTTGCCAGAATTGTTGGAACATCTTCATCCAATTTCAGCACTTTCAAATTTTCCCAAGGGAATTTGCACCCGTAAAATGAGAAAATCGCCTCTTTGAGACTTTTCAGAATTTGAAAATTCGTAGAATCCAGTCTGATTCCATTGGAATACGCTAGAATCGATTCGAGCACTCTTTCAGCGTGTTTCAGGGATTCACCTCTTCGATAGTGTGCTTTTGCCCATGTTGGACACAGCCTAACCGCGATTTCCGAGTGTTTTAAGGAATTTTCAGCCAA</canonical>
            <polymorphic>CTCCTCTGCTCAATCGCCACGTGGAAATCGTCCAAAATTTCAGCAATTTCAGCCAAATTCTCGCGAATTTCCGCGATTTTTGGGGATTCTAAAATTCCAAATTTTTGAAAAAAAAATCTATTTTTTTAACATTACCAATCTGAATCGCCGTTTCCAACTGCTTCTTCAAAAACCCCATCGATTGCTCATACTTTTCTAAACTACAGTATGCCGATGCAAGTGATCCATATACTGATTCCAGCAGTTTGATTGATTTCAAATCAAGGTCCAAGGAGAATTGCAGGATTGTTAGGAAACTGAATTTTTAAAGAATTGTGGCGTTTCTTAAGACTCTTTTAAGACCTTTCCAGGCATTTTTAGGCCTTTTCTGGGCTTTTTAGGCCTCAGAATGGTCGAGAAAAGTCATTTTGGCTGTTTTAAGACACTTTAAGCCTAAAATAAGTCAAAAGTCATTTTCAGCAAGTTTTTGCCGTTTAAAAGGAATTTTAGGCTTAAATTARGTCTAGAAAAGTCATTTTAGCTGTTCTGTAGATCGCTTAGAGGCATTTTGAGCCTAGAAAATGTCTGGAAAGGTCATTTCAGATGTTTTGGCGTTTTAAGGCATTTCAAGCCTAAAAGTAGCCAAAGAAAGTAATTTTTGGGCATTTTAGACCTAAAAAATTAAAAATTTACCCTCAAAATTCGCTTTTCCATCTCTGGAATCCGCTAGAATCGTTTGTCCAAGTGTTGCCAGAATTGTTGGAACATCTTCATCCAATTTCAGCACTTTCAAATTTTCCCAAGGGAATTTGCACCCGTAAAATGAGAAAATCGCCTCTTTGAGACTTTTCAGAATTTGAAAATTCGTAGAATCCAGTCTGATTCCATTGGAATACGCTAGAATCGATTCGAGCACTCTTTCAGCGTGTTTCAGGGATTCACCTCTTCGATAGTGTGCTTTTGCCCATGTTGGACACAGCCTAACCGCGATTTCCGAGTGTTTTAAGGAATTTTCAGCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>321 179 126 99 81 65 47 20 18 18 11 10 5</canonical_bands>
                <polymorphic_bands>321 179 126 104 81 65 47 20 18 18 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGCAGGATTGTTAGGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TAGGCTCAAAATGCCTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>279</pcr_amplicon_size>
		<canonical_amplicon>TTGCAGGATTGTTAGGAAACTGAATTTTTAAAGAATTGTGGCGTTTCTTAAGACTCTTTTAAGACCTTTCCAGGCATTTTTAGGCCTTTTCTGGGCTTTTTAGGCCTCAGAATGGTCGAGAAAAGTCATTTTGGCTGTTTTAAGACACTTTAAGCCTAAAATAAGTCAAAAGTCATTTTCAGCAAGTTTTTGCCGTTTAAAAGGAATTTTAGGCTTAAATTAAGTCTAGAAAAGTCATTTTAGCTGTTCTGTAGATCGCTTAGAGGCATTTTGAGCCTA</canonical_amplicon>
		<polymorphic_amplicon>TTGCAGGATTGTTAGGAAACTGAATTTTTAAAGAATTGTGGCGTTTCTTAAGACTCTTTTAAGACCTTTCCAGGCATTTTTAGGCCTTTTCTGGGCTTTTTAGGCCTCAGAATGGTCGAGAAAAGTCATTTTGGCTGTTTTAAGACACTTTAAGCCTAAAATAAGTCAAAAGTCATTTTCAGCAAGTTTTTGCCGTTTAAAAGGAATTTTAGGCTTAAATTARGTCTAGAAAAGTCATTTTAGCTGTTCTGTAGATCGCTTAGAGGCATTTTGAGCCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29426</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>65165</contig_pos>
        <strand>+</strand>
        <context>CAAATTTTTC[A/T]AAAAAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGCCCACTTTTTTAAATCCAATTTCCGGAAATTCCCGGTTCAAATTTTTC</left_flank>
        <right_flank>AAAAAAAAAAAATTTTTCTCAATTTTTCTTCCAATCAACAAAAAATGAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAATTTCAAGTTTTTAACAAAACTTGATATTTACATATTTTATATTAATTTGAAGCCCATAAAATTTCCTACAATTTGGTATAAATTTCATTTTTCTAGCTAAATTGTGGAAAAAGTTATGCGCCTTTAAACTTCCAGTGGTTGGGTCGATGCACCATATCGCACCACACTTTAAAGGCGCATAACTATTGTCAAATTCAACCTAGGAATATGATATTTATTTGAAATTGTGGGAAATTTGAAAAGCTTTACAAGTGTTATAAATTTGTCTAGGATTGAATACGAAAATTTTGATGAAAATTCAAAGAGGCAAAAAATGGTTGGAATTTGAAAATTTGAACTTTTTTAATTTTTAGGTTTTTTTTTTCGATTTTCCTACTGTAGATTTTCCTACTACCTTGAACTTTAAACTTTTCAAAACCCTAAACTCCGCCCCTTTTTGAGCTCCGCCCACTTTTTTAAATCCAATTTCCGGAAATTCCCGGTTCAAATTTTTCAAAAAAAAAAAAATTTTTCTCAATTTTTCTTCCAATCAACAAAAAATGAGCAAAAAATCACATGGTGTTTACCTGGCTCTCTCACTGAAAAACTATTATCCACCCCCCAATTTTTTTCTTCCACTGAACATTTTTTGTTCCCTAGCTGAGCAATATGTTTATACACTGGTTTTTGGTGTTGTTTATTTATGCAAATTTTTTATTTATTTTTAGGTTTGGAGACCGAAAATGAGAGAGTTTTGAATTTTAACTATTATTTTTGAATTTCGAACGTTGAGAGCTTCAAAACGAACCTAAACACGACCTATTTTGAAGAATTTTGAAATTTTCTGAATTTTCCAGTTTTGGCGCCAAAATTCGGAAATTTGAATTTTCGAAAAATTCAGTCATGTTTATACTCGTTTTGAAGCACTTGACTTGCCAAACTTAAAACTTTTTGAACTTTTGAGATTGCTCGAAAATTAACCGAGATACGGTAGTTTTAGTTATCAGTATGGGCGA</canonical>
            <polymorphic>TGAAATTTCAAGTTTTTAACAAAACTTGATATTTACATATTTTATATTAATTTGAAGCCCATAAAATTTCCTACAATTTGGTATAAATTTCATTTTTCTAGCTAAATTGTGGAAAAAGTTATGCGCCTTTAAACTTCCAGTGGTTGGGTCGATGCACCATATCGCACCACACTTTAAAGGCGCATAACTATTGTCAAATTCAACCTAGGAATATGATATTTATTTGAAATTGTGGGAAATTTGAAAAGCTTTACAAGTGTTATAAATTTGTCTAGGATTGAATACGAAAATTTTGATGAAAATTCAAAGAGGCAAAAAATGGTTGGAATTTGAAAATTTGAACTTTTTTAATTTTTAGGTTTTTTTTTTCGATTTTCCTACTGTAGATTTTCCTACTACCTTGAACTTTAAACTTTTCAAAACCCTAAACTCCGCCCCTTTTTGAGCTCCGCCCACTTTTTTAAATCCAATTTCCGGAAATTCCCGGTTCAAATTTTTCWAAAAAAAAAAAATTTTTCTCAATTTTTCTTCCAATCAACAAAAAATGAGCAAAAAATCACATGGTGTTTACCTGGCTCTCTCACTGAAAAACTATTATCCACCCCCCAATTTTTTTCTTCCACTGAACATTTTTTGTTCCCTAGCTGAGCAATATGTTTATACACTGGTTTTTGGTGTTGTTTATTTATGCAAATTTTTTATTTATTTTTAGGTTTGGAGACCGAAAATGAGAGAGTTTTGAATTTTAACTATTATTTTTGAATTTCGAACGTTGAGAGCTTCAAAACGAACCTAAACACGACCTATTTTGAAGAATTTTGAAATTTTCTGAATTTTCCAGTTTTGGCGCCAAAATTCGGAAATTTGAATTTTCGAAAAATTCAGTCATGTTTATACTCGTTTTGAAGCACTTGACTTGCCAAACTTAAAACTTTTTGAACTTTTGAGATTGCTCGAAAATTAACCGAGATACGGTAGTTTTAGTTATCAGTATGGGCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTTTTCAAAACCCTAAACTC</pcr_primer_p1>
		<pcr_primer_p2>GTATAAACATATTGCTCAGCTAGG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AAACTTTTCAAAACCCTAAACTCCGCCCCTTTTTGAGCTCCGCCCACTTTTTTAAATCCAATTTCCGGAAATTCCCGGTTCAAATTTTTCAAAAAAAAAAAAATTTTTCTCAATTTTTCTTCCAATCAACAAAAAATGAGCAAAAAATCACATGGTGTTTACCTGGCTCTCTCACTGAAAAACTATTATCCACCCCCCAATTTTTTTCTTCCACTGAACATTTTTTGTTCCCTAGCTGAGCAATATGTTTATAC</canonical_amplicon>
		<polymorphic_amplicon>AAACTTTTCAAAACCCTAAACTCCGCCCCTTTTTGAGCTCCGCCCACTTTTTTAAATCCAATTTCCGGAAATTCCCGGTTCAAATTTTTCWAAAAAAAAAAAATTTTTCTCAATTTTTCTTCCAATCAACAAAAAATGAGCAAAAAATCACATGGTGTTTACCTGGCTCTCTCACTGAAAAACTATTATCCACCCCCCAATTTTTTTCTTCCACTGAACATTTTTTGTTCCCTAGCTGAGCAATATGTTTATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29427</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>65177</contig_pos>
        <strand></strand>
        <context>AAAAAAAAAA[A/T]TTTTTCTCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAATCCAATTTCCGGAAATTCCCGGTTCAAATTTTTCAAAAAAAAAAAA</left_flank>
        <right_flank>TTTTTCTCAATTTTTCTTCCAATCAACAAAAAATGAGCAAAAAATCACAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTAACAAAACTTGATATTTACATATTTTATATTAATTTGAAGCCCATAAAATTTCCTACAATTTGGTATAAATTTCATTTTTCTAGCTAAATTGTGGAAAAAGTTATGCGCCTTTAAACTTCCAGTGGTTGGGTCGATGCACCATATCGCACCACACTTTAAAGGCGCATAACTATTGTCAAATTCAACCTAGGAATATGATATTTATTTGAAATTGTGGGAAATTTGAAAAGCTTTACAAGTGTTATAAATTTGTCTAGGATTGAATACGAAAATTTTGATGAAAATTCAAAGAGGCAAAAAATGGTTGGAATTTGAAAATTTGAACTTTTTTAATTTTTAGGTTTTTTTTTTCGATTTTCCTACTGTAGATTTTCCTACTACCTTGAACTTTAAACTTTTCAAAACCCTAAACTCCGCCCCTTTTTGAGCTCCGCCCACTTTTTTAAATCCAATTTCCGGAAATTCCCGGTTCAAATTTTTCAAAAAAAAAAAAATTTTTCTCAATTTTTCTTCCAATCAACAAAAAATGAGCAAAAAATCACATGGTGTTTACCTGGCTCTCTCACTGAAAAACTATTATCCACCCCCCAATTTTTTTCTTCCACTGAACATTTTTTGTTCCCTAGCTGAGCAATATGTTTATACACTGGTTTTTGGTGTTGTTTATTTATGCAAATTTTTTATTTATTTTTAGGTTTGGAGACCGAAAATGAGAGAGTTTTGAATTTTAACTATTATTTTTGAATTTCGAACGTTGAGAGCTTCAAAACGAACCTAAACACGACCTATTTTGAAGAATTTTGAAATTTTCTGAATTTTCCAGTTTTGGCGCCAAAATTCGGAAATTTGAATTTTCGAAAAATTCAGTCATGTTTATACTCGTTTTGAAGCACTTGACTTGCCAAACTTAAAACTTTTTGAACTTTTGAGATTGCTCGAAAATTAACCGAGATACGGTAGTTTTAGTTATCAGTATGGGCGACATGGTGCATCG</canonical>
            <polymorphic>TTTTTAACAAAACTTGATATTTACATATTTTATATTAATTTGAAGCCCATAAAATTTCCTACAATTTGGTATAAATTTCATTTTTCTAGCTAAATTGTGGAAAAAGTTATGCGCCTTTAAACTTCCAGTGGTTGGGTCGATGCACCATATCGCACCACACTTTAAAGGCGCATAACTATTGTCAAATTCAACCTAGGAATATGATATTTATTTGAAATTGTGGGAAATTTGAAAAGCTTTACAAGTGTTATAAATTTGTCTAGGATTGAATACGAAAATTTTGATGAAAATTCAAAGAGGCAAAAAATGGTTGGAATTTGAAAATTTGAACTTTTTTAATTTTTAGGTTTTTTTTTTCGATTTTCCTACTGTAGATTTTCCTACTACCTTGAACTTTAAACTTTTCAAAACCCTAAACTCCGCCCCTTTTTGAGCTCCGCCCACTTTTTTAAATCCAATTTCCGGAAATTCCCGGTTCAAATTTTTCAAAAAAAAAAAAWTTTTTCTCAATTTTTCTTCCAATCAACAAAAAATGAGCAAAAAATCACATGGTGTTTACCTGGCTCTCTCACTGAAAAACTATTATCCACCCCCCAATTTTTTTCTTCCACTGAACATTTTTTGTTCCCTAGCTGAGCAATATGTTTATACACTGGTTTTTGGTGTTGTTTATTTATGCAAATTTTTTATTTATTTTTAGGTTTGGAGACCGAAAATGAGAGAGTTTTGAATTTTAACTATTATTTTTGAATTTCGAACGTTGAGAGCTTCAAAACGAACCTAAACACGACCTATTTTGAAGAATTTTGAAATTTTCTGAATTTTCCAGTTTTGGCGCCAAAATTCGGAAATTTGAATTTTCGAAAAATTCAGTCATGTTTATACTCGTTTTGAAGCACTTGACTTGCCAAACTTAAAACTTTTTGAACTTTTGAGATTGCTCGAAAATTAACCGAGATACGGTAGTTTTAGTTATCAGTATGGGCGACATGGTGCATCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>182 144 134 111 53 52 49 41 27 26 24 22 21 20 19 13 12 11 9 8 8 8 6</canonical_bands>
                <polymorphic_bands>201 144 134 111 53 52 49 41 27 26 24 22 21 20 13 12 11 9 8 8 8 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>119 92 87 85 80 54 53 49 36 31 27 26 24 22 20 19 19 16 15 13 12 11 11 10 10 10 10 9 8 8 8 6</canonical_bands>
                <polymorphic_bands>119 92 87 85 80 54 53 49 36 31 29 27 26 24 22 20 19 16 15 13 12 11 11 10 10 10 9 8 8 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTTTTCAAAACCCTAAACTC</pcr_primer_p1>
		<pcr_primer_p2>GTATAAACATATTGCTCAGCTAGG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AAACTTTTCAAAACCCTAAACTCCGCCCCTTTTTGAGCTCCGCCCACTTTTTTAAATCCAATTTCCGGAAATTCCCGGTTCAAATTTTTCAAAAAAAAAAAAATTTTTCTCAATTTTTCTTCCAATCAACAAAAAATGAGCAAAAAATCACATGGTGTTTACCTGGCTCTCTCACTGAAAAACTATTATCCACCCCCCAATTTTTTTCTTCCACTGAACATTTTTTGTTCCCTAGCTGAGCAATATGTTTATAC</canonical_amplicon>
		<polymorphic_amplicon>AAACTTTTCAAAACCCTAAACTCCGCCCCTTTTTGAGCTCCGCCCACTTTTTTAAATCCAATTTCCGGAAATTCCCGGTTCAAATTTTTCAAAAAAAAAAAAWTTTTTCTCAATTTTTCTTCCAATCAACAAAAAATGAGCAAAAAATCACATGGTGTTTACCTGGCTCTCTCACTGAAAAACTATTATCCACCCCCCAATTTTTTTCTTCCACTGAACATTTTTTGTTCCCTAGCTGAGCAATATGTTTATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29428</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>65229</contig_pos>
        <strand>+</strand>
        <context>AAATCACATG[A/G]TGTTTACCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCTCAATTTTTCTTCCAATCAACAAAAAATGAGCAAAAAATCACATG</left_flank>
        <right_flank>TGTTTACCTGGCTCTCTCACTGAAAAACTATTATCCACCCCCCAATTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTCCTACAATTTGGTATAAATTTCATTTTTCTAGCTAAATTGTGGAAAAAGTTATGCGCCTTTAAACTTCCAGTGGTTGGGTCGATGCACCATATCGCACCACACTTTAAAGGCGCATAACTATTGTCAAATTCAACCTAGGAATATGATATTTATTTGAAATTGTGGGAAATTTGAAAAGCTTTACAAGTGTTATAAATTTGTCTAGGATTGAATACGAAAATTTTGATGAAAATTCAAAGAGGCAAAAAATGGTTGGAATTTGAAAATTTGAACTTTTTTAATTTTTAGGTTTTTTTTTTCGATTTTCCTACTGTAGATTTTCCTACTACCTTGAACTTTAAACTTTTCAAAACCCTAAACTCCGCCCCTTTTTGAGCTCCGCCCACTTTTTTAAATCCAATTTCCGGAAATTCCCGGTTCAAATTTTTCAAAAAAAAAAAAATTTTTCTCAATTTTTCTTCCAATCAACAAAAAATGAGCAAAAAATCACATGGTGTTTACCTGGCTCTCTCACTGAAAAACTATTATCCACCCCCCAATTTTTTTCTTCCACTGAACATTTTTTGTTCCCTAGCTGAGCAATATGTTTATACACTGGTTTTTGGTGTTGTTTATTTATGCAAATTTTTTATTTATTTTTAGGTTTGGAGACCGAAAATGAGAGAGTTTTGAATTTTAACTATTATTTTTGAATTTCGAACGTTGAGAGCTTCAAAACGAACCTAAACACGACCTATTTTGAAGAATTTTGAAATTTTCTGAATTTTCCAGTTTTGGCGCCAAAATTCGGAAATTTGAATTTTCGAAAAATTCAGTCATGTTTATACTCGTTTTGAAGCACTTGACTTGCCAAACTTAAAACTTTTTGAACTTTTGAGATTGCTCGAAAATTAACCGAGATACGGTAGTTTTAGTTATCAGTATGGGCGACATGGTGCATCGACTAGAAGTTTAAAGGCGCATAGGCCTAGAAATTTGAAACTAGGTCTTGAAA</canonical>
            <polymorphic>AATTTCCTACAATTTGGTATAAATTTCATTTTTCTAGCTAAATTGTGGAAAAAGTTATGCGCCTTTAAACTTCCAGTGGTTGGGTCGATGCACCATATCGCACCACACTTTAAAGGCGCATAACTATTGTCAAATTCAACCTAGGAATATGATATTTATTTGAAATTGTGGGAAATTTGAAAAGCTTTACAAGTGTTATAAATTTGTCTAGGATTGAATACGAAAATTTTGATGAAAATTCAAAGAGGCAAAAAATGGTTGGAATTTGAAAATTTGAACTTTTTTAATTTTTAGGTTTTTTTTTTCGATTTTCCTACTGTAGATTTTCCTACTACCTTGAACTTTAAACTTTTCAAAACCCTAAACTCCGCCCCTTTTTGAGCTCCGCCCACTTTTTTAAATCCAATTTCCGGAAATTCCCGGTTCAAATTTTTCAAAAAAAAAAAAATTTTTCTCAATTTTTCTTCCAATCAACAAAAAATGAGCAAAAAATCACATGRTGTTTACCTGGCTCTCTCACTGAAAAACTATTATCCACCCCCCAATTTTTTTCTTCCACTGAACATTTTTTGTTCCCTAGCTGAGCAATATGTTTATACACTGGTTTTTGGTGTTGTTTATTTATGCAAATTTTTTATTTATTTTTAGGTTTGGAGACCGAAAATGAGAGAGTTTTGAATTTTAACTATTATTTTTGAATTTCGAACGTTGAGAGCTTCAAAACGAACCTAAACACGACCTATTTTGAAGAATTTTGAAATTTTCTGAATTTTCCAGTTTTGGCGCCAAAATTCGGAAATTTGAATTTTCGAAAAATTCAGTCATGTTTATACTCGTTTTGAAGCACTTGACTTGCCAAACTTAAAACTTTTTGAACTTTTGAGATTGCTCGAAAATTAACCGAGATACGGTAGTTTTAGTTATCAGTATGGGCGACATGGTGCATCGACTAGAAGTTTAAAGGCGCATAGGCCTAGAAATTTGAAACTAGGTCTTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACNNNGTG</site>
                <isoschizomers>
                    <enzyme>AdeI</enzyme>
                    <enzyme>DraIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>196 122 111 104 97 63 57 47 42 31 25 21 18 17 14 13 10 7 3 2</canonical_bands>
                <polymorphic_bands>196 122 111 104 97 63 57 47 42 31 25 24 21 18 14 13 10 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTTTTCAAAACCCTAAACTC</pcr_primer_p1>
		<pcr_primer_p2>GTATAAACATATTGCTCAGCTAGG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AAACTTTTCAAAACCCTAAACTCCGCCCCTTTTTGAGCTCCGCCCACTTTTTTAAATCCAATTTCCGGAAATTCCCGGTTCAAATTTTTCAAAAAAAAAAAAATTTTTCTCAATTTTTCTTCCAATCAACAAAAAATGAGCAAAAAATCACATGGTGTTTACCTGGCTCTCTCACTGAAAAACTATTATCCACCCCCCAATTTTTTTCTTCCACTGAACATTTTTTGTTCCCTAGCTGAGCAATATGTTTATAC</canonical_amplicon>
		<polymorphic_amplicon>AAACTTTTCAAAACCCTAAACTCCGCCCCTTTTTGAGCTCCGCCCACTTTTTTAAATCCAATTTCCGGAAATTCCCGGTTCAAATTTTTCAAAAAAAAAAAAATTTTTCTCAATTTTTCTTCCAATCAACAAAAAATGAGCAAAAAATCACATGRTGTTTACCTGGCTCTCTCACTGAAAAACTATTATCCACCCCCCAATTTTTTTCTTCCACTGAACATTTTTTGTTCCCTAGCTGAGCAATATGTTTATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29439</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>70958</contig_pos>
        <strand></strand>
        <context>tgatacaatt[T/A]tcatttttct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATT</left_flank>
        <right_flank>TCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGACGGATAGTGAAATTGAAATTTTCGATAAAAATTTGTTTTTGTAAAATGCCAAAAAAATATGGAATTTTCAAAACCTCATAACTTGCTTCATTTTTGATGGATTGTTATGAATTTTAAACAATAATGTAGAACATTTTATGAGCTTTTAAATGATATAAAATATGATAAGAAAAATTAAGTTTAAACTTGTTTGGAAAAATTCAATCTACCATGCCTTCAGGTAGAGGCGTTTTTTCAAGAATTTCAAAATTTTCAACAAAGTCGGTGATACTGTATTTTATATAATTTTGTAGCCCATAGAATTACCTACAATTCTATACAAAATTCATAAAAATCGGTTCAGAATGACAGCTTCAAATTTTTTGAGAATACACTTTTTTTCGAAAAAAAAATTTTTTCCAAAAATTTTCAAATTTCAAGATTTTCACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCATAACCATATTTGTTCAGAATCTACCATGCCTACTGTGAACTGGACATGTGTATGGAACGACACAAAAGCATACTGTACTCATGGTGGC</canonical>
            <polymorphic>GGACGGATAGTGAAATTGAAATTTTCGATAAAAATTTGTTTTTGTAAAATGCCAAAAAAATATGGAATTTTCAAAACCTCATAACTTGCTTCATTTTTGATGGATTGTTATGAATTTTAAACAATAATGTAGAACATTTTATGAGCTTTTAAATGATATAAAATATGATAAGAAAAATTAAGTTTAAACTTGTTTGGAAAAATTCAATCTACCATGCCTTCAGGTAGAGGCGTTTTTTCAAGAATTTCAAAATTTTCAACAAAGTCGGTGATACTGTATTTTATATAATTTTGTAGCCCATAGAATTACCTACAATTCTATACAAAATTCATAAAAATCGGTTCAGAATGACAGCTTCAAATTTTTTGAGAATACACTTTTTTTCGAAAAAAAAATTTTTTCCAAAAATTTTCAAATTTCAAGATTTTCACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTWTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCATAACCATATTTGTTCAGAATCTACCATGCCTACTGTGAACTGGACATGTGTATGGAACGACACAAAAGCATACTGTACTCATGGTGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCAAAACTGCTGTTAGCATA</pcr_primer_p1>
		<pcr_primer_p2>TTTATAACAATTTTGAATATCAGACC</pcr_primer_p2>
		<pcr_amplicon_size>281</pcr_amplicon_size>
		<canonical_amplicon>ACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAA</canonical_amplicon>
		<polymorphic_amplicon>ACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTWTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29440</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>71037</contig_pos>
        <strand></strand>
        <context>atattgcacc[G/T]aattttaaag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACC</left_flank>
        <right_flank>AATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATAACTTGCTTCATTTTTGATGGATTGTTATGAATTTTAAACAATAATGTAGAACATTTTATGAGCTTTTAAATGATATAAAATATGATAAGAAAAATTAAGTTTAAACTTGTTTGGAAAAATTCAATCTACCATGCCTTCAGGTAGAGGCGTTTTTTCAAGAATTTCAAAATTTTCAACAAAGTCGGTGATACTGTATTTTATATAATTTTGTAGCCCATAGAATTACCTACAATTCTATACAAAATTCATAAAAATCGGTTCAGAATGACAGCTTCAAATTTTTTGAGAATACACTTTTTTTCGAAAAAAAAATTTTTTCCAAAAATTTTCAAATTTCAAGATTTTCACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCATAACCATATTTGTTCAGAATCTACCATGCCTACTGTGAACTGGACATGTGTATGGAACGACACAAAAGCATACTGTACTCATGGTGGCCGTGTCGTATTATCGATTGGCTGGAACAGGACATTGTCCCCGGCCGTCTCGACAATCGATGCAGTTTCCCGTGGCGACG</canonical>
            <polymorphic>CATAACTTGCTTCATTTTTGATGGATTGTTATGAATTTTAAACAATAATGTAGAACATTTTATGAGCTTTTAAATGATATAAAATATGATAAGAAAAATTAAGTTTAAACTTGTTTGGAAAAATTCAATCTACCATGCCTTCAGGTAGAGGCGTTTTTTCAAGAATTTCAAAATTTTCAACAAAGTCGGTGATACTGTATTTTATATAATTTTGTAGCCCATAGAATTACCTACAATTCTATACAAAATTCATAAAAATCGGTTCAGAATGACAGCTTCAAATTTTTTGAGAATACACTTTTTTTCGAAAAAAAAATTTTTTCCAAAAATTTTCAAATTTCAAGATTTTCACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCKAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCATAACCATATTTGTTCAGAATCTACCATGCCTACTGTGAACTGGACATGTGTATGGAACGACACAAAAGCATACTGTACTCATGGTGGCCGTGTCGTATTATCGATTGGCTGGAACAGGACATTGTCCCCGGCCGTCTCGACAATCGATGCAGTTTCCCGTGGCGACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>249 104 88 75 61 61 47 42 34 34 33 31 29 27 26 21 13 9 8 8</canonical_bands>
                <polymorphic_bands>249 151 88 75 61 61 42 34 34 33 31 29 27 26 21 13 9 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAAAACTGCTGTTAGCATA</pcr_primer_p1>
		<pcr_primer_p2>TTTATAACAATTTTGAATATCAGACC</pcr_primer_p2>
		<pcr_amplicon_size>281</pcr_amplicon_size>
		<canonical_amplicon>ACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAA</canonical_amplicon>
		<polymorphic_amplicon>ACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCKAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29441</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>71112</contig_pos>
        <strand></strand>
        <context>aggaaattta[A/G]agagccaata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTA</left_flank>
        <right_flank>AGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATATAAAATATGATAAGAAAAATTAAGTTTAAACTTGTTTGGAAAAATTCAATCTACCATGCCTTCAGGTAGAGGCGTTTTTTCAAGAATTTCAAAATTTTCAACAAAGTCGGTGATACTGTATTTTATATAATTTTGTAGCCCATAGAATTACCTACAATTCTATACAAAATTCATAAAAATCGGTTCAGAATGACAGCTTCAAATTTTTTGAGAATACACTTTTTTTCGAAAAAAAAATTTTTTCCAAAAATTTTCAAATTTCAAGATTTTCACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCATAACCATATTTGTTCAGAATCTACCATGCCTACTGTGAACTGGACATGTGTATGGAACGACACAAAAGCATACTGTACTCATGGTGGCCGTGTCGTATTATCGATTGGCTGGAACAGGACATTGTCCCCGGCCGTCTCGACAATCGATGCAGTTTCCCGTGGCGACGACTGACACGTGGCATCAATCGAGAAAGGGGCGGAGCCAATGGTGAAGCCGTTTCGAGTGACTCGTCGTCGACGAC</canonical>
            <polymorphic>GATATAAAATATGATAAGAAAAATTAAGTTTAAACTTGTTTGGAAAAATTCAATCTACCATGCCTTCAGGTAGAGGCGTTTTTTCAAGAATTTCAAAATTTTCAACAAAGTCGGTGATACTGTATTTTATATAATTTTGTAGCCCATAGAATTACCTACAATTCTATACAAAATTCATAAAAATCGGTTCAGAATGACAGCTTCAAATTTTTTGAGAATACACTTTTTTTCGAAAAAAAAATTTTTTCCAAAAATTTTCAAATTTCAAGATTTTCACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTARAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCATAACCATATTTGTTCAGAATCTACCATGCCTACTGTGAACTGGACATGTGTATGGAACGACACAAAAGCATACTGTACTCATGGTGGCCGTGTCGTATTATCGATTGGCTGGAACAGGACATTGTCCCCGGCCGTCTCGACAATCGATGCAGTTTCCCGTGGCGACGACTGACACGTGGCATCAATCGAGAAAGGGGCGGAGCCAATGGTGAAGCCGTTTCGAGTGACTCGTCGTCGACGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>279 251 251 121 67 31</canonical_bands>
                <polymorphic_bands>318 279 251 121 31</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>279 252 167 84 77 67 44 24 6</canonical_bands>
                <polymorphic_bands>279 252 234 84 77 44 24 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAAAACTGCTGTTAGCATA</pcr_primer_p1>
		<pcr_primer_p2>TCATAAAATTTCCTTTATTTTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>411</pcr_amplicon_size>
		<canonical_amplicon>ACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGA</canonical_amplicon>
		<polymorphic_amplicon>ACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTARAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29442</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>71130</contig_pos>
        <strand>+</strand>
        <context>atagggtatt[A/C]taawtttgTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATT</left_flank>
        <right_flank>TAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATTAAGTTTAAACTTGTTTGGAAAAATTCAATCTACCATGCCTTCAGGTAGAGGCGTTTTTTCAAGAATTTCAAAATTTTCAACAAAGTCGGTGATACTGTATTTTATATAATTTTGTAGCCCATAGAATTACCTACAATTCTATACAAAATTCATAAAAATCGGTTCAGAATGACAGCTTCAAATTTTTTGAGAATACACTTTTTTTCGAAAAAAAAATTTTTTCCAAAAATTTTCAAATTTCAAGATTTTCACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCATAACCATATTTGTTCAGAATCTACCATGCCTACTGTGAACTGGACATGTGTATGGAACGACACAAAAGCATACTGTACTCATGGTGGCCGTGTCGTATTATCGATTGGCTGGAACAGGACATTGTCCCCGGCCGTCTCGACAATCGATGCAGTTTCCCGTGGCGACGACTGACACGTGGCATCAATCGAGAAAGGGGCGGAGCCAATGGTGAAGCCGTTTCGAGTGACTCGTCGTCGACGACTTGTGACACGAATGCTAC</canonical>
            <polymorphic>AAAAATTAAGTTTAAACTTGTTTGGAAAAATTCAATCTACCATGCCTTCAGGTAGAGGCGTTTTTTCAAGAATTTCAAAATTTTCAACAAAGTCGGTGATACTGTATTTTATATAATTTTGTAGCCCATAGAATTACCTACAATTCTATACAAAATTCATAAAAATCGGTTCAGAATGACAGCTTCAAATTTTTTGAGAATACACTTTTTTTCGAAAAAAAAATTTTTTCCAAAAATTTTCAAATTTCAAGATTTTCACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTMTAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCATAACCATATTTGTTCAGAATCTACCATGCCTACTGTGAACTGGACATGTGTATGGAACGACACAAAAGCATACTGTACTCATGGTGGCCGTGTCGTATTATCGATTGGCTGGAACAGGACATTGTCCCCGGCCGTCTCGACAATCGATGCAGTTTCCCGTGGCGACGACTGACACGTGGCATCAATCGAGAAAGGGGCGGAGCCAATGGTGAAGCCGTTTCGAGTGACTCGTCGTCGACGACTTGTGACACGAATGCTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 466 34</canonical_bands>
                <polymorphic_bands>534 466</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAAAACTGCTGTTAGCATA</pcr_primer_p1>
		<pcr_primer_p2>TCATAAAATTTCCTTTATTTTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>411</pcr_amplicon_size>
		<canonical_amplicon>ACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGA</canonical_amplicon>
		<polymorphic_amplicon>ACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTMTAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29443</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>71134</contig_pos>
        <strand></strand>
        <context>ggtattmtaa[A/T]tttgTTTGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAA</left_flank>
        <right_flank>TTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTAAGTTTAAACTTGTTTGGAAAAATTCAATCTACCATGCCTTCAGGTAGAGGCGTTTTTTCAAGAATTTCAAAATTTTCAACAAAGTCGGTGATACTGTATTTTATATAATTTTGTAGCCCATAGAATTACCTACAATTCTATACAAAATTCATAAAAATCGGTTCAGAATGACAGCTTCAAATTTTTTGAGAATACACTTTTTTTCGAAAAAAAAATTTTTTCCAAAAATTTTCAAATTTCAAGATTTTCACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCATAACCATATTTGTTCAGAATCTACCATGCCTACTGTGAACTGGACATGTGTATGGAACGACACAAAAGCATACTGTACTCATGGTGGCCGTGTCGTATTATCGATTGGCTGGAACAGGACATTGTCCCCGGCCGTCTCGACAATCGATGCAGTTTCCCGTGGCGACGACTGACACGTGGCATCAATCGAGAAAGGGGCGGAGCCAATGGTGAAGCCGTTTCGAGTGACTCGTCGTCGACGACTTGTGACACGAATGCTACTACA</canonical>
            <polymorphic>ATTAAGTTTAAACTTGTTTGGAAAAATTCAATCTACCATGCCTTCAGGTAGAGGCGTTTTTTCAAGAATTTCAAAATTTTCAACAAAGTCGGTGATACTGTATTTTATATAATTTTGTAGCCCATAGAATTACCTACAATTCTATACAAAATTCATAAAAATCGGTTCAGAATGACAGCTTCAAATTTTTTGAGAATACACTTTTTTTCGAAAAAAAAATTTTTTCCAAAAATTTTCAAATTTCAAGATTTTCACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAWTTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCATAACCATATTTGTTCAGAATCTACCATGCCTACTGTGAACTGGACATGTGTATGGAACGACACAAAAGCATACTGTACTCATGGTGGCCGTGTCGTATTATCGATTGGCTGGAACAGGACATTGTCCCCGGCCGTCTCGACAATCGATGCAGTTTCCCGTGGCGACGACTGACACGTGGCATCAATCGAGAAAGGGGCGGAGCCAATGGTGAAGCCGTTTCGAGTGACTCGTCGTCGACGACTTGTGACACGAATGCTACTACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>346 104 75 61 61 47 42 34 34 31 29 27 26 24 21 13 9 8 8</canonical_bands>
                <polymorphic_bands>346 104 88 75 61 47 42 34 34 31 29 26 24 21 13 9 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>314 84 61 47 42 37 36 34 34 32 31 29 27 26 24 24 20 17 13 12 11 10 10 9 8 8</canonical_bands>
                <polymorphic_bands>314 84 61 51 47 42 37 36 34 34 32 31 29 26 24 20 17 13 12 11 10 10 9 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAAAACTGCTGTTAGCATA</pcr_primer_p1>
		<pcr_primer_p2>TCATAAAATTTCCTTTATTTTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>411</pcr_amplicon_size>
		<canonical_amplicon>ACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGA</canonical_amplicon>
		<polymorphic_amplicon>ACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAWTTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29444</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>71371</contig_pos>
        <strand>+</strand>
        <context>TAAAGACCCA[C/T]AACCATATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCA</left_flank>
        <right_flank>AACCATATTTGTTCAGAATCTACCATGCCTACTGTGAACTGGACATGTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTCAAGATTTTCACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCATAACCATATTTGTTCAGAATCTACCATGCCTACTGTGAACTGGACATGTGTATGGAACGACACAAAAGCATACTGTACTCATGGTGGCCGTGTCGTATTATCGATTGGCTGGAACAGGACATTGTCCCCGGCCGTCTCGACAATCGATGCAGTTTCCCGTGGCGACGACTGACACGTGGCATCAATCGAGAAAGGGGCGGAGCCAATGGTGAAGCCGTTTCGAGTGACTCGTCGTCGACGACTTGTGACACGAATGCTACTACACATCATCATCAGAAACATGTTTCTATTGTGAGTTTTTTTTTAATTTCAGCTTGAAATCGAAAAATGTTTTTTACAAAAATTTTATTTTTTTTTCAATTTATTTGAATTCAAATCAGTGGTCATGCAAATTGTATATCATTTTAAAGCTAATAAAATATACTACAAATTGATGTGATTTTCATTTTCATAGCCCAATTTTGAACCAAGTTATGCGCCTTTAAACTTTCAGAAGTTGGG</canonical>
            <polymorphic>AAATTTCAAGATTTTCACCAAAACTGCTGTTAGCATATTATATATTTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCAYAACCATATTTGTTCAGAATCTACCATGCCTACTGTGAACTGGACATGTGTATGGAACGACACAAAAGCATACTGTACTCATGGTGGCCGTGTCGTATTATCGATTGGCTGGAACAGGACATTGTCCCCGGCCGTCTCGACAATCGATGCAGTTTCCCGTGGCGACGACTGACACGTGGCATCAATCGAGAAAGGGGCGGAGCCAATGGTGAAGCCGTTTCGAGTGACTCGTCGTCGACGACTTGTGACACGAATGCTACTACACATCATCATCAGAAACATGTTTCTATTGTGAGTTTTTTTTTAATTTCAGCTTGAAATCGAAAAATGTTTTTTACAAAAATTTTATTTTTTTTTCAATTTATTTGAATTCAAATCAGTGGTCATGCAAATTGTATATCATTTTAAAGCTAATAAAATATACTACAAATTGATGTGATTTTCATTTTCATAGCCCAATTTTGAACCAAGTTATGCGCCTTTAAACTTTCAGAAGTTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTGCTTAAAATAAAGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTTCCAGCCAATCGATAATAC</pcr_primer_p2>
		<pcr_amplicon_size>217</pcr_amplicon_size>
		<canonical_amplicon>TTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCATAACCATATTTGTTCAGAATCTACCATGCCTACTGTGAACTGGACATGTGTATGGAACGACACAAAAGCATACTGTACTCATGGTGGCCGTGTCGTATTATCGATTGGCTGGAAC</canonical_amplicon>
		<polymorphic_amplicon>TTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCAYAACCATATTTGTTCAGAATCTACCATGCCTACTGTGAACTGGACATGTGTATGGAACGACACAAAAGCATACTGTACTCATGGTGGCCGTGTCGTATTATCGATTGGCTGGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29445</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>71416</contig_pos>
        <strand>+</strand>
        <context>TGAACTGGAC[A/T]TGTGTATGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCCATAACCATATTTGTTCAGAATCTACCATGCCTACTGTGAACTGGAC</left_flank>
        <right_flank>TGTGTATGGAACGACACAAAAGCATACTGTACTCATGGTGGCCGTGTCGT</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCATAACCATATTTGTTCAGAATCTACCATGCCTACTGTGAACTGGACATGTGTATGGAACGACACAAAAGCATACTGTACTCATGGTGGCCGTGTCGTATTATCGATTGGCTGGAACAGGACATTGTCCCCGGCCGTCTCGACAATCGATGCAGTTTCCCGTGGCGACGACTGACACGTGGCATCAATCGAGAAAGGGGCGGAGCCAATGGTGAAGCCGTTTCGAGTGACTCGTCGTCGACGACTTGTGACACGAATGCTACTACACATCATCATCAGAAACATGTTTCTATTGTGAGTTTTTTTTTAATTTCAGCTTGAAATCGAAAAATGTTTTTTACAAAAATTTTATTTTTTTTTCAATTTATTTGAATTCAAATCAGTGGTCATGCAAATTGTATATCATTTTAAAGCTAATAAAATATACTACAAATTGATGTGATTTTCATTTTCATAGCCCAATTTTGAACCAAGTTATGCGCCTTTAAACTTTCAGAAGTTGGGTCGATGCACCATGTCGGAATGTTTAAAGGCGCATAACTTTTTTTA</canonical>
            <polymorphic>TTTTTTAAAGCCCATCAAATTTTCTACAAAATGATACAATTTTCATTTTTCTATCACTATTTTGAAAAAAGTTATGCGCCTTTAAGTTTTGAGTTTTCTGCCGATGCACCATATTGCACCGAATTTTAAAGGCGCTGAACTATTTTCAACATTTACCTAGAAAAATGAAATTTATAGTAAATTATAGGAAATTTAAAGAGCCAATAGGGTATTATAAATTTGTTTGGGTCTGATATTCAAAATTGTTATAAAAATCCATTTTTTCTAAAATACCAAAAATTTTGATTTTTTTCAAAAAAAAAGAATTTTCAAAATTTCATAACTTGCTGCATTTTTATTCAAATTCCAAGATTTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCATAACCATATTTGTTCAGAATCTACCATGCCTACTGTGAACTGGACWTGTGTATGGAACGACACAAAAGCATACTGTACTCATGGTGGCCGTGTCGTATTATCGATTGGCTGGAACAGGACATTGTCCCCGGCCGTCTCGACAATCGATGCAGTTTCCCGTGGCGACGACTGACACGTGGCATCAATCGAGAAAGGGGCGGAGCCAATGGTGAAGCCGTTTCGAGTGACTCGTCGTCGACGACTTGTGACACGAATGCTACTACACATCATCATCAGAAACATGTTTCTATTGTGAGTTTTTTTTTAATTTCAGCTTGAAATCGAAAAATGTTTTTTACAAAAATTTTATTTTTTTTTCAATTTATTTGAATTCAAATCAGTGGTCATGCAAATTGTATATCATTTTAAAGCTAATAAAATATACTACAAATTGATGTGATTTTCATTTTCATAGCCCAATTTTGAACCAAGTTATGCGCCTTTAAACTTTCAGAAGTTGGGTCGATGCACCATGTCGGAATGTTTAAAGGCGCATAACTTTTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>498 267 128 107</canonical_bands>
                <polymorphic_bands>626 267 107</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>498 267 235</canonical_bands>
                <polymorphic_bands>733 267</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>502 263 235</canonical_bands>
                <polymorphic_bands>737 263</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>436 200 126 105 43 35 35 20</canonical_bands>
                <polymorphic_bands>436 200 126 105 55 43 35</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGTGCTTAAAATAAAGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTTCCAGCCAATCGATAATAC</pcr_primer_p2>
		<pcr_amplicon_size>217</pcr_amplicon_size>
		<canonical_amplicon>TTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCATAACCATATTTGTTCAGAATCTACCATGCCTACTGTGAACTGGACATGTGTATGGAACGACACAAAAGCATACTGTACTCATGGTGGCCGTGTCGTATTATCGATTGGCTGGAAC</canonical_amplicon>
		<polymorphic_amplicon>TTTGTGCTTAAAATAAAGGAAATTTTATGAGCTTCTGAATGATATAAAACACAATTTTCAACAATCTGCGCTTCAAGTCGCTTCATGCAGTTTAAAGACCCATAACCATATTTGTTCAGAATCTACCATGCCTACTGTGAACTGGACWTGTGTATGGAACGACACAAAAGCATACTGTACTCATGGTGGCCGTGTCGTATTATCGATTGGCTGGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29446</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>74398</contig_pos>
        <strand>+</strand>
        <context>TAATACGAAA[A/G]TGAGTCTWAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTCTAAAAATCGATATTTGAAGCCTGCATAAGGCTATTTTAATACGAAA</left_flank>
        <right_flank>TGAGTCTTAAATGACTATTTCAACCCTAAAAATCGCAATTTTATGTCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCCTTTCATCAGAACGTCTTCTAGAATCCCTTCGAATCGCTTCAGAAGACGTGCACTCCAAAAAGACAACGCCAAATTCCAATAATCGATTTTTTGCGATTTTTCGAAACTTCCGACGCATACTTTTCAGGTGAAAAATGTCTTCGATGAGGTAGAACTTTTGGCGGGAAATCGCGCAAATTTGAAATTCGCGCTCAAACGATTTTCGAATCTCCCGCGCGCTCAAATCCACAGCGGAGCGCATTTGCCGTCGGAAATCGTCAAACGAGGTGGATTCGATGAGGTCAGGATGGGCGGAGCATAGACGACGACGGAGGCTCGATTTTCCGGCGCCTGGGATTCCCATCAGCAAGATTAGGGACATCTGGACACACAGATCGATGGAGAATCGATCAGCCTGCAAACAACTATTTTAGTGCTAAAAATGACTATTTCAAGATTTAAAAATGTCTAAAAATCGATATTTGAAGCCTGCATAAGGCTATTTTAATACGAAAATGAGTCTTAAATGACTATTTCAACCCTAAAAATCGCAATTTTATGTCAAAAAATCGATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTGTATTTTTGAGCCTGAAAATGGCTAACTTAGGCTTAAGAATCGTCATTTTCAGGCTAATAATTGCGATTTTCAGAATAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTAAGTCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTCAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCAGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTA</canonical>
            <polymorphic>TTGCCTTTCATCAGAACGTCTTCTAGAATCCCTTCGAATCGCTTCAGAAGACGTGCACTCCAAAAAGACAACGCCAAATTCCAATAATCGATTTTTTGCGATTTTTCGAAACTTCCGACGCATACTTTTCAGGTGAAAAATGTCTTCGATGAGGTAGAACTTTTGGCGGGAAATCGCGCAAATTTGAAATTCGCGCTCAAACGATTTTCGAATCTCCCGCGCGCTCAAATCCACAGCGGAGCGCATTTGCCGTCGGAAATCGTCAAACGAGGTGGATTCGATGAGGTCAGGATGGGCGGAGCATAGACGACGACGGAGGCTCGATTTTCCGGCGCCTGGGATTCCCATCAGCAAGATTAGGGACATCTGGACACACAGATCGATGGAGAATCGATCAGCCTGCAAACAACTATTTTAGTGCTAAAAATGACTATTTCAAGATTTAAAAATGTCTAAAAATCGATATTTGAAGCCTGCATAAGGCTATTTTAATACGAAARTGAGTCTTAAATGACTATTTCAACCCTAAAAATCGCAATTTTATGTCAAAAAATCGATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTGTATTTTTGAGCCTGAAAATGGCTAACTTAGGCTTAAGAATCGTCATTTTCAGGCTAATAATTGCGATTTTCAGAATAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTAAGTCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTCAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCAGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACACAGATCGATGGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>CAGTTTTCATGCTTAAAATGACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CACACAGATCGATGGAGAATCGATCAGCCTGCAAACAACTATTTTAGTGCTAAAAATGACTATTTCAAGATTTAAAAATGTCTAAAAATCGATATTTGAAGCCTGCATAAGGCTATTTTAATACGAAAATGAGTCTTAAATGACTATTTCAACCCTAAAAATCGCAATTTTATGTCAAAAAATCGATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTG</canonical_amplicon>
		<polymorphic_amplicon>CACACAGATCGATGGAGAATCGATCAGCCTGCAAACAACTATTTTAGTGCTAAAAATGACTATTTCAAGATTTAAAAATGTCTAAAAATCGATATTTGAAGCCTGCATAAGGCTATTTTAATACGAAARTGAGTCTTAAATGACTATTTCAACCCTAAAAATCGCAATTTTATGTCAAAAAATCGATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29447</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>74406</contig_pos>
        <strand>+</strand>
        <context>AARTGAGTCT[A/T]AAATGACTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATCGATATTTGAAGCCTGCATAAGGCTATTTTAATACGAAAATGAGTCT</left_flank>
        <right_flank>AAATGACTATTTCAACCCTAAAAATCGCAATTTTATGTCAAAAAATCGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCAGAACGTCTTCTAGAATCCCTTCGAATCGCTTCAGAAGACGTGCACTCCAAAAAGACAACGCCAAATTCCAATAATCGATTTTTTGCGATTTTTCGAAACTTCCGACGCATACTTTTCAGGTGAAAAATGTCTTCGATGAGGTAGAACTTTTGGCGGGAAATCGCGCAAATTTGAAATTCGCGCTCAAACGATTTTCGAATCTCCCGCGCGCTCAAATCCACAGCGGAGCGCATTTGCCGTCGGAAATCGTCAAACGAGGTGGATTCGATGAGGTCAGGATGGGCGGAGCATAGACGACGACGGAGGCTCGATTTTCCGGCGCCTGGGATTCCCATCAGCAAGATTAGGGACATCTGGACACACAGATCGATGGAGAATCGATCAGCCTGCAAACAACTATTTTAGTGCTAAAAATGACTATTTCAAGATTTAAAAATGTCTAAAAATCGATATTTGAAGCCTGCATAAGGCTATTTTAATACGAAAATGAGTCTTAAATGACTATTTCAACCCTAAAAATCGCAATTTTATGTCAAAAAATCGATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTGTATTTTTGAGCCTGAAAATGGCTAACTTAGGCTTAAGAATCGTCATTTTCAGGCTAATAATTGCGATTTTCAGAATAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTAAGTCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTCAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCAGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGC</canonical>
            <polymorphic>CATCAGAACGTCTTCTAGAATCCCTTCGAATCGCTTCAGAAGACGTGCACTCCAAAAAGACAACGCCAAATTCCAATAATCGATTTTTTGCGATTTTTCGAAACTTCCGACGCATACTTTTCAGGTGAAAAATGTCTTCGATGAGGTAGAACTTTTGGCGGGAAATCGCGCAAATTTGAAATTCGCGCTCAAACGATTTTCGAATCTCCCGCGCGCTCAAATCCACAGCGGAGCGCATTTGCCGTCGGAAATCGTCAAACGAGGTGGATTCGATGAGGTCAGGATGGGCGGAGCATAGACGACGACGGAGGCTCGATTTTCCGGCGCCTGGGATTCCCATCAGCAAGATTAGGGACATCTGGACACACAGATCGATGGAGAATCGATCAGCCTGCAAACAACTATTTTAGTGCTAAAAATGACTATTTCAAGATTTAAAAATGTCTAAAAATCGATATTTGAAGCCTGCATAAGGCTATTTTAATACGAAAATGAGTCTWAAATGACTATTTCAACCCTAAAAATCGCAATTTTATGTCAAAAAATCGATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTGTATTTTTGAGCCTGAAAATGGCTAACTTAGGCTTAAGAATCGTCATTTTCAGGCTAATAATTGCGATTTTCAGAATAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTAAGTCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTCAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCAGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>435 97 57 48 46 42 42 42 42 42 26 21 21 21 18</canonical_bands>
                <polymorphic_bands>435 115 57 48 46 42 42 42 42 42 26 21 21 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACACAGATCGATGGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>CAGTTTTCATGCTTAAAATGACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CACACAGATCGATGGAGAATCGATCAGCCTGCAAACAACTATTTTAGTGCTAAAAATGACTATTTCAAGATTTAAAAATGTCTAAAAATCGATATTTGAAGCCTGCATAAGGCTATTTTAATACGAAAATGAGTCTTAAATGACTATTTCAACCCTAAAAATCGCAATTTTATGTCAAAAAATCGATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTG</canonical_amplicon>
		<polymorphic_amplicon>CACACAGATCGATGGAGAATCGATCAGCCTGCAAACAACTATTTTAGTGCTAAAAATGACTATTTCAAGATTTAAAAATGTCTAAAAATCGATATTTGAAGCCTGCATAAGGCTATTTTAATACGAAAATGAGTCTWAAATGACTATTTCAACCCTAAAAATCGCAATTTTATGTCAAAAAATCGATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29448</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>74613</contig_pos>
        <strand>+</strand>
        <context>AATTTTAAGT[A/G]tgaaaatgac</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCAGGCTAATAATTGCGATTTTCAGAATAAATATGGCAATTTTAAGT</left_flank>
        <right_flank>TGAAAATGACTATTTTAAGTCTGAAAATGACTATTTTAAGCCTGAAAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCGCGCGCTCAAATCCACAGCGGAGCGCATTTGCCGTCGGAAATCGTCAAACGAGGTGGATTCGATGAGGTCAGGATGGGCGGAGCATAGACGACGACGGAGGCTCGATTTTCCGGCGCCTGGGATTCCCATCAGCAAGATTAGGGACATCTGGACACACAGATCGATGGAGAATCGATCAGCCTGCAAACAACTATTTTAGTGCTAAAAATGACTATTTCAAGATTTAAAAATGTCTAAAAATCGATATTTGAAGCCTGCATAAGGCTATTTTAATACGAAAATGAGTCTTAAATGACTATTTCAACCCTAAAAATCGCAATTTTATGTCAAAAAATCGATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTGTATTTTTGAGCCTGAAAATGGCTAACTTAGGCTTAAGAATCGTCATTTTCAGGCTAATAATTGCGATTTTCAGAATAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTAAGTCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTCAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCAGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAAATGGCTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATCGCTATTTTAAGCTTGAAAAAGGCGTTTTTTGACTCAAAAATTACAGTTTCAGGCTTAAAATTCACGAAAAAAAGCCCGCAAAAAGTACTGTGGACAAAATTTTAGGCCCTTTTT</canonical>
            <polymorphic>CCCGCGCGCTCAAATCCACAGCGGAGCGCATTTGCCGTCGGAAATCGTCAAACGAGGTGGATTCGATGAGGTCAGGATGGGCGGAGCATAGACGACGACGGAGGCTCGATTTTCCGGCGCCTGGGATTCCCATCAGCAAGATTAGGGACATCTGGACACACAGATCGATGGAGAATCGATCAGCCTGCAAACAACTATTTTAGTGCTAAAAATGACTATTTCAAGATTTAAAAATGTCTAAAAATCGATATTTGAAGCCTGCATAAGGCTATTTTAATACGAAAATGAGTCTTAAATGACTATTTCAACCCTAAAAATCGCAATTTTATGTCAAAAAATCGATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTGTATTTTTGAGCCTGAAAATGGCTAACTTAGGCTTAAGAATCGTCATTTTCAGGCTAATAATTGCGATTTTCAGAATAAATATGGCAATTTTAAGTRTGAAAATGACTATTTTAAGTCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTCAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCAGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAAATGGCTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATCGCTATTTTAAGCTTGAAAAAGGCGTTTTTTGACTCAAAAATTACAGTTTCAGGCTTAAAATTCACGAAAAAAAGCCCGCAAAAAGTACTGTGGACAAAATTTTAGGCCCTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>436 184 126 84 84 40 25 21</canonical_bands>
                <polymorphic_bands>436 184 126 84 84 46 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATTTGAAGCGTGAATATGG</pcr_primer_p1>
		<pcr_primer_p2>AGTTTTAGGCTGAAAATAGTCATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTGTATTTTTGAGCCTGAAAATGGCTAACTTAGGCTTAAGAATCGTCATTTTCAGGCTAATAATTGCGATTTTCAGAATAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTAAGTCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTCAGCCTAAAACT</canonical_amplicon>
		<polymorphic_amplicon>ATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTGTATTTTTGAGCCTGAAAATGGCTAACTTAGGCTTAAGAATCGTCATTTTCAGGCTAATAATTGCGATTTTCAGAATAAATATGGCAATTTTAAGTRTGAAAATGACTATTTTAAGTCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTCAGCCTAAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29449</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>74630</contig_pos>
        <strand></strand>
        <context>tgactatttt[A/T]AGTCTGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCGATTTTCAGAATAAATATGGCAATTTTAAGTCTGAAAATGACTATTTT</left_flank>
        <right_flank>AGTCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGCGGAGCGCATTTGCCGTCGGAAATCGTCAAACGAGGTGGATTCGATGAGGTCAGGATGGGCGGAGCATAGACGACGACGGAGGCTCGATTTTCCGGCGCCTGGGATTCCCATCAGCAAGATTAGGGACATCTGGACACACAGATCGATGGAGAATCGATCAGCCTGCAAACAACTATTTTAGTGCTAAAAATGACTATTTCAAGATTTAAAAATGTCTAAAAATCGATATTTGAAGCCTGCATAAGGCTATTTTAATACGAAAATGAGTCTTAAATGACTATTTCAACCCTAAAAATCGCAATTTTATGTCAAAAAATCGATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTGTATTTTTGAGCCTGAAAATGGCTAACTTAGGCTTAAGAATCGTCATTTTCAGGCTAATAATTGCGATTTTCAGAATAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTAAGTCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTCAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCAGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAAATGGCTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATCGCTATTTTAAGCTTGAAAAAGGCGTTTTTTGACTCAAAAATTACAGTTTCAGGCTTAAAATTCACGAAAAAAAGCCCGCAAAAAGTACTGTGGACAAAATTTTAGGCCCTTTTTAACATTTTTCTGAGAAA</canonical>
            <polymorphic>ACAGCGGAGCGCATTTGCCGTCGGAAATCGTCAAACGAGGTGGATTCGATGAGGTCAGGATGGGCGGAGCATAGACGACGACGGAGGCTCGATTTTCCGGCGCCTGGGATTCCCATCAGCAAGATTAGGGACATCTGGACACACAGATCGATGGAGAATCGATCAGCCTGCAAACAACTATTTTAGTGCTAAAAATGACTATTTCAAGATTTAAAAATGTCTAAAAATCGATATTTGAAGCCTGCATAAGGCTATTTTAATACGAAAATGAGTCTTAAATGACTATTTCAACCCTAAAAATCGCAATTTTATGTCAAAAAATCGATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTGTATTTTTGAGCCTGAAAATGGCTAACTTAGGCTTAAGAATCGTCATTTTCAGGCTAATAATTGCGATTTTCAGAATAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTWAGTCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTCAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCAGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAACTGGCTATTTTAAGCCTGAAAATGACTATTTTTAGCCTAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTTAGCCTAAAAATGGCTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATCGCTATTTTAAGCTTGAAAAAGGCGTTTTTTGACTCAAAAATTACAGTTTCAGGCTTAAAATTCACGAAAAAAAGCCCGCAAAAAGTACTGTGGACAAAATTTTAGGCCCTTTTTAACATTTTTCTGAGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>211 97 58 57 48 48 46 42 42 42 42 42 42 42 21 21 21 21 21 18 18</canonical_bands>
                <polymorphic_bands>211 97 58 57 48 48 46 42 42 42 42 42 42 42 42 21 21 21 18 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATTTGAAGCGTGAATATGG</pcr_primer_p1>
		<pcr_primer_p2>AGTTTTAGGCTGAAAATAGTCATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTGTATTTTTGAGCCTGAAAATGGCTAACTTAGGCTTAAGAATCGTCATTTTCAGGCTAATAATTGCGATTTTCAGAATAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTAAGTCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTCAGCCTAAAACT</canonical_amplicon>
		<polymorphic_amplicon>ATATTTGAAGCGTGAATATGGCTATTTTAGCTCTAAAAATAGTCATTTTAAGCATGAAAACTGTATTTTTGAGCCTGAAAATGGCTAACTTAGGCTTAAGAATCGTCATTTTCAGGCTAATAATTGCGATTTTCAGAATAAATATGGCAATTTTAAGTCTGAAAATGACTATTTTWAGTCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTAAGCCTGAAAATGACTATTTTCAGCCTAAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29450</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>82157</contig_pos>
        <strand></strand>
        <context>TAAACAAAAA[A/C]AAACAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACAAAATCCAGGCTTTTCAAAAAATCTAAAAACTCAAAATAAACAAAAA</left_flank>
        <right_flank>AAACAAAAAACCAACAAAAATACACTTTTTTAACAGCACAATCCCTCCAC</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAGTTATTTTAGTTGATTTTAGTGAGATTTTATTGATTTTGATGCTTTAAAAATTTTCAGGACGGTTTTCAGCAATTTTTCATAACAAGTTGACTGTTTTTGCATCAAAATTGGCTTAATAGTCGTTGAAAATAGCCAAAAACCCATTAAAAAATTTTTCTACAGTACCTTAAAGGCGCAAAACAAGAATTTTTGTTTGGTGCTTCGCAACGAAAAGCTTTTTTTTTGCGATTTTAGGGTGTTTTAGGCTATAAAATAGATTTTTCTGTTTGTAAATTGTAATTTCAGCAATTTTGAATGAGAACTTAACTGTTTTTGCACGAAAATTCACTTAAAAATCATGAAAAATAGCCGAAAATCCAGTACAAATATTTTCTACAGCAGTTTAAAGGCGCGTCACACAAAATTTTATTTCGCTTCGAAGCGAAAAAGGAATTTTAGCGATTTAACAAAATCCAGGCTTTTCAAAAAATCTAAAAACTCAAAATAAACAAAAAAAAACAAAAAACCAACAAAAATACACTTTTTTAACAGCACAATCCCTCCACACCACCGATGGCCGCGTTTTCAGGATTTTCTAGGCCACCGCGTCCCCTCCTCGTGATGCCTCGAAGTAAACACAATACGTCATTGGTGTAGTCTCTGTATTGACACACACACTTTTTCCCGAAAATTGGAGAAAAACCCCGCCGGCAAAAAAAACATATCTCGTCTTGAACGCTCCTTTTTTTATTGATTTTTTCCCTCTTTTTTTTGACCCAAATAAACGATTTTTGTCTCTTCTTTTTGTGCGTTTTTTGTGTCAATTTTCCAATAATTTTTTCCCCGATTTTTCTAAACTAAAAATTGCGAAATACCAGTCTAAATTCAATTTCAGCATGGTATTCAAAAAAGCGCCGTGCCTTTTTGGCTCGGCAATTTTGCTGGGACTGCTTCTAGCGGTGGCTGGAATTCTGTTGCTTATCGGAGTTCCAATTGATGGAATTGTGAATCGACAG</canonical>
            <polymorphic>GAAAGTTATTTTAGTTGATTTTAGTGAGATTTTATTGATTTTGATGCTTTAAAAATTTTCAGGACGGTTTTCAGCAATTTTTCATAACAAGTTGACTGTTTTTGCATCAAAATTGGCTTAATAGTCGTTGAAAATAGCCAAAAACCCATTAAAAAATTTTTCTACAGTACCTTAAAGGCGCAAAACAAGAATTTTTGTTTGGTGCTTCGCAACGAAAAGCTTTTTTTTTGCGATTTTAGGGTGTTTTAGGCTATAAAATAGATTTTTCTGTTTGTAAATTGTAATTTCAGCAATTTTGAATGAGAACTTAACTGTTTTTGCACGAAAATTCACTTAAAAATCATGAAAAATAGCCGAAAATCCAGTACAAATATTTTCTACAGCAGTTTAAAGGCGCGTCACACAAAATTTTATTTCGCTTCGAAGCGAAAAAGGAATTTTAGCGATTTAACAAAATCCAGGCTTTTCAAAAAATCTAAAAACTCAAAATAAACAAAAAMAAACAAAAAACCAACAAAAATACACTTTTTTAACAGCACAATCCCTCCACACCACCGATGGCCGCGTTTTCAGGATTTTCTAGGCCACCGCGTCCCCTCCTCGTGATGCCTCGAAGTAAACACAATACGTCATTGGTGTAGTCTCTGTATTGACACACACACTTTTTCCCGAAAATTGGAGAAAAACCCCGCCGGCAAAAAAAACATATCTCGTCTTGAACGCTCCTTTTTTTATTGATTTTTTCCCTCTTTTTTTTGACCCAAATAAACGATTTTTGTCTCTTCTTTTTGTGCGTTTTTTGTGTCAATTTTCCAATAATTTTTTCCCCGATTTTTCTAAACTAAAAATTGCGAAATACCAGTCTAAATTCAATTTCAGCATGGTATTCAAAAAAGCGCCGTGCCTTTTTGGCTCGGCAATTTTGCTGGGACTGCTTCTAGCGGTGGCTGGAATTCTGTTGCTTATCGGAGTTCCAATTGATGGAATTGTGAATCGACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGGAATTTTAGCGATTTAAC</pcr_primer_p1>
		<pcr_primer_p2>GGAAAAAGTGTGTGTGTCAATAC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AAAAGGAATTTTAGCGATTTAACAAAATCCAGGCTTTTCAAAAAATCTAAAAACTCAAAATAAACAAAAAAAAACAAAAAACCAACAAAAATACACTTTTTTAACAGCACAATCCCTCCACACCACCGATGGCCGCGTTTTCAGGATTTTCTAGGCCACCGCGTCCCCTCCTCGTGATGCCTCGAAGTAAACACAATACGTCATTGGTGTAGTCTCTGTATTGACACACACACTTTTTCC</canonical_amplicon>
		<polymorphic_amplicon>AAAAGGAATTTTAGCGATTTAACAAAATCCAGGCTTTTCAAAAAATCTAAAAACTCAAAATAAACAAAAAMAAACAAAAAACCAACAAAAATACACTTTTTTAACAGCACAATCCCTCCACACCACCGATGGCCGCGTTTTCAGGATTTTCTAGGCCACCGCGTCCCCTCCTCGTGATGCCTCGAAGTAAACACAATACGTCATTGGTGTAGTCTCTGTATTGACACACACACTTTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29451</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>82178</contig_pos>
        <strand>+</strand>
        <context>CCAACAAAAA[G/T]ACACTTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAATCTAAAAACTCAAAATAAACAAAAAAAAACAAAAAACCAACAAAAA</left_flank>
        <right_flank>ACACTTTTTTAACAGCACAATCCCTCCACACCACCGATGGCCGCGTTTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTGAGATTTTATTGATTTTGATGCTTTAAAAATTTTCAGGACGGTTTTCAGCAATTTTTCATAACAAGTTGACTGTTTTTGCATCAAAATTGGCTTAATAGTCGTTGAAAATAGCCAAAAACCCATTAAAAAATTTTTCTACAGTACCTTAAAGGCGCAAAACAAGAATTTTTGTTTGGTGCTTCGCAACGAAAAGCTTTTTTTTTGCGATTTTAGGGTGTTTTAGGCTATAAAATAGATTTTTCTGTTTGTAAATTGTAATTTCAGCAATTTTGAATGAGAACTTAACTGTTTTTGCACGAAAATTCACTTAAAAATCATGAAAAATAGCCGAAAATCCAGTACAAATATTTTCTACAGCAGTTTAAAGGCGCGTCACACAAAATTTTATTTCGCTTCGAAGCGAAAAAGGAATTTTAGCGATTTAACAAAATCCAGGCTTTTCAAAAAATCTAAAAACTCAAAATAAACAAAAAAAAACAAAAAACCAACAAAAATACACTTTTTTAACAGCACAATCCCTCCACACCACCGATGGCCGCGTTTTCAGGATTTTCTAGGCCACCGCGTCCCCTCCTCGTGATGCCTCGAAGTAAACACAATACGTCATTGGTGTAGTCTCTGTATTGACACACACACTTTTTCCCGAAAATTGGAGAAAAACCCCGCCGGCAAAAAAAACATATCTCGTCTTGAACGCTCCTTTTTTTATTGATTTTTTCCCTCTTTTTTTTGACCCAAATAAACGATTTTTGTCTCTTCTTTTTGTGCGTTTTTTGTGTCAATTTTCCAATAATTTTTTCCCCGATTTTTCTAAACTAAAAATTGCGAAATACCAGTCTAAATTCAATTTCAGCATGGTATTCAAAAAAGCGCCGTGCCTTTTTGGCTCGGCAATTTTGCTGGGACTGCTTCTAGCGGTGGCTGGAATTCTGTTGCTTATCGGAGTTCCAATTGATGGAATTGTGAATCGACAGGTCGTTGGGGTGAGTTTTTTA</canonical>
            <polymorphic>TAGTGAGATTTTATTGATTTTGATGCTTTAAAAATTTTCAGGACGGTTTTCAGCAATTTTTCATAACAAGTTGACTGTTTTTGCATCAAAATTGGCTTAATAGTCGTTGAAAATAGCCAAAAACCCATTAAAAAATTTTTCTACAGTACCTTAAAGGCGCAAAACAAGAATTTTTGTTTGGTGCTTCGCAACGAAAAGCTTTTTTTTTGCGATTTTAGGGTGTTTTAGGCTATAAAATAGATTTTTCTGTTTGTAAATTGTAATTTCAGCAATTTTGAATGAGAACTTAACTGTTTTTGCACGAAAATTCACTTAAAAATCATGAAAAATAGCCGAAAATCCAGTACAAATATTTTCTACAGCAGTTTAAAGGCGCGTCACACAAAATTTTATTTCGCTTCGAAGCGAAAAAGGAATTTTAGCGATTTAACAAAATCCAGGCTTTTCAAAAAATCTAAAAACTCAAAATAAACAAAAAAAAACAAAAAACCAACAAAAAKACACTTTTTTAACAGCACAATCCCTCCACACCACCGATGGCCGCGTTTTCAGGATTTTCTAGGCCACCGCGTCCCCTCCTCGTGATGCCTCGAAGTAAACACAATACGTCATTGGTGTAGTCTCTGTATTGACACACACACTTTTTCCCGAAAATTGGAGAAAAACCCCGCCGGCAAAAAAAACATATCTCGTCTTGAACGCTCCTTTTTTTATTGATTTTTTCCCTCTTTTTTTTGACCCAAATAAACGATTTTTGTCTCTTCTTTTTGTGCGTTTTTTGTGTCAATTTTCCAATAATTTTTTCCCCGATTTTTCTAAACTAAAAATTGCGAAATACCAGTCTAAATTCAATTTCAGCATGGTATTCAAAAAAGCGCCGTGCCTTTTTGGCTCGGCAATTTTGCTGGGACTGCTTCTAGCGGTGGCTGGAATTCTGTTGCTTATCGGAGTTCCAATTGATGGAATTGTGAATCGACAGGTCGTTGGGGTGAGTTTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGGAATTTTAGCGATTTAAC</pcr_primer_p1>
		<pcr_primer_p2>GGAAAAAGTGTGTGTGTCAATAC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AAAAGGAATTTTAGCGATTTAACAAAATCCAGGCTTTTCAAAAAATCTAAAAACTCAAAATAAACAAAAAAAAACAAAAAACCAACAAAAATACACTTTTTTAACAGCACAATCCCTCCACACCACCGATGGCCGCGTTTTCAGGATTTTCTAGGCCACCGCGTCCCCTCCTCGTGATGCCTCGAAGTAAACACAATACGTCATTGGTGTAGTCTCTGTATTGACACACACACTTTTTCC</canonical_amplicon>
		<polymorphic_amplicon>AAAAGGAATTTTAGCGATTTAACAAAATCCAGGCTTTTCAAAAAATCTAAAAACTCAAAATAAACAAAAAAAAACAAAAAACCAACAAAAAKACACTTTTTTAACAGCACAATCCCTCCACACCACCGATGGCCGCGTTTTCAGGATTTTCTAGGCCACCGCGTCCCCTCCTCGTGATGCCTCGAAGTAAACACAATACGTCATTGGTGTAGTCTCTGTATTGACACACACACTTTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29452</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>82278</contig_pos>
        <strand>+</strand>
        <context>TCGAAGTAAA[C/T]ACAATACGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGGATTTTCTAGGCCACCGCGTCCCCTCCTCGTGATGCCTCGAAGTAAA</left_flank>
        <right_flank>ACAATACGTCATTGGTGTAGTCTCTGTATTGACACACACACTTTTTCCCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGTCGTTGAAAATAGCCAAAAACCCATTAAAAAATTTTTCTACAGTACCTTAAAGGCGCAAAACAAGAATTTTTGTTTGGTGCTTCGCAACGAAAAGCTTTTTTTTTGCGATTTTAGGGTGTTTTAGGCTATAAAATAGATTTTTCTGTTTGTAAATTGTAATTTCAGCAATTTTGAATGAGAACTTAACTGTTTTTGCACGAAAATTCACTTAAAAATCATGAAAAATAGCCGAAAATCCAGTACAAATATTTTCTACAGCAGTTTAAAGGCGCGTCACACAAAATTTTATTTCGCTTCGAAGCGAAAAAGGAATTTTAGCGATTTAACAAAATCCAGGCTTTTCAAAAAATCTAAAAACTCAAAATAAACAAAAAAAAACAAAAAACCAACAAAAATACACTTTTTTAACAGCACAATCCCTCCACACCACCGATGGCCGCGTTTTCAGGATTTTCTAGGCCACCGCGTCCCCTCCTCGTGATGCCTCGAAGTAAACACAATACGTCATTGGTGTAGTCTCTGTATTGACACACACACTTTTTCCCGAAAATTGGAGAAAAACCCCGCCGGCAAAAAAAACATATCTCGTCTTGAACGCTCCTTTTTTTATTGATTTTTTCCCTCTTTTTTTTGACCCAAATAAACGATTTTTGTCTCTTCTTTTTGTGCGTTTTTTGTGTCAATTTTCCAATAATTTTTTCCCCGATTTTTCTAAACTAAAAATTGCGAAATACCAGTCTAAATTCAATTTCAGCATGGTATTCAAAAAAGCGCCGTGCCTTTTTGGCTCGGCAATTTTGCTGGGACTGCTTCTAGCGGTGGCTGGAATTCTGTTGCTTATCGGAGTTCCAATTGATGGAATTGTGAATCGACAGGTCGTTGGGGTGAGTTTTTTAGAGAAAATTTAGGGACTATAAATCGAAGAAATAGCCCAAAAATCGACTTTTTTCGAGGGAAACTTGGCTTTTGGTTTCAAAAATGACAAAAATTGAATTA</canonical>
            <polymorphic>TAGTCGTTGAAAATAGCCAAAAACCCATTAAAAAATTTTTCTACAGTACCTTAAAGGCGCAAAACAAGAATTTTTGTTTGGTGCTTCGCAACGAAAAGCTTTTTTTTTGCGATTTTAGGGTGTTTTAGGCTATAAAATAGATTTTTCTGTTTGTAAATTGTAATTTCAGCAATTTTGAATGAGAACTTAACTGTTTTTGCACGAAAATTCACTTAAAAATCATGAAAAATAGCCGAAAATCCAGTACAAATATTTTCTACAGCAGTTTAAAGGCGCGTCACACAAAATTTTATTTCGCTTCGAAGCGAAAAAGGAATTTTAGCGATTTAACAAAATCCAGGCTTTTCAAAAAATCTAAAAACTCAAAATAAACAAAAAAAAACAAAAAACCAACAAAAATACACTTTTTTAACAGCACAATCCCTCCACACCACCGATGGCCGCGTTTTCAGGATTTTCTAGGCCACCGCGTCCCCTCCTCGTGATGCCTCGAAGTAAAYACAATACGTCATTGGTGTAGTCTCTGTATTGACACACACACTTTTTCCCGAAAATTGGAGAAAAACCCCGCCGGCAAAAAAAACATATCTCGTCTTGAACGCTCCTTTTTTTATTGATTTTTTCCCTCTTTTTTTTGACCCAAATAAACGATTTTTGTCTCTTCTTTTTGTGCGTTTTTTGTGTCAATTTTCCAATAATTTTTTCCCCGATTTTTCTAAACTAAAAATTGCGAAATACCAGTCTAAATTCAATTTCAGCATGGTATTCAAAAAAGCGCCGTGCCTTTTTGGCTCGGCAATTTTGCTGGGACTGCTTCTAGCGGTGGCTGGAATTCTGTTGCTTATCGGAGTTCCAATTGATGGAATTGTGAATCGACAGGTCGTTGGGGTGAGTTTTTTAGAGAAAATTTAGGGACTATAAATCGAAGAAATAGCCCAAAAATCGACTTTTTTCGAGGGAAACTTGGCTTTTGGTTTCAAAAATGACAAAAATTGAATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>132 121 109 99 83 79 69 45 43 39 33 21 18 17 17 16 14 11 11 10 3 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>132 121 109 99 83 79 69 45 43 39 33 33 21 18 17 14 11 11 10 3 2 2 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGGAATTTTAGCGATTTAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCGGGAAAAAGTGTGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAAGGAATTTTAGCGATTTAACAAAATCCAGGCTTTTCAAAAAATCTAAAAACTCAAAATAAACAAAAAAAAACAAAAAACCAACAAAAATACACTTTTTTAACAGCACAATCCCTCCACACCACCGATGGCCGCGTTTTCAGGATTTTCTAGGCCACCGCGTCCCCTCCTCGTGATGCCTCGAAGTAAACACAATACGTCATTGGTGTAGTCTCTGTATTGACACACACACTTTTTCCCGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGGAATTTTAGCGATTTAACAAAATCCAGGCTTTTCAAAAAATCTAAAAACTCAAAATAAACAAAAAAAAACAAAAAACCAACAAAAATACACTTTTTTAACAGCACAATCCCTCCACACCACCGATGGCCGCGTTTTCAGGATTTTCTAGGCCACCGCGTCCCCTCCTCGTGATGCCTCGAAGTAAAYACAATACGTCATTGGTGTAGTCTCTGTATTGACACACACACTTTTTCCCGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29453</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>82299</contig_pos>
        <strand>+</strand>
        <context>ATTGGTGTAG[C/T]CTCTGTATTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCCCCTCCTCGTGATGCCTCGAAGTAAACACAATACGTCATTGGTGTAG</left_flank>
        <right_flank>CTCTGTATTGACACACACACTTTTTCCCGAAAATTGGAGAAAAACCCCGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCCATTAAAAAATTTTTCTACAGTACCTTAAAGGCGCAAAACAAGAATTTTTGTTTGGTGCTTCGCAACGAAAAGCTTTTTTTTTGCGATTTTAGGGTGTTTTAGGCTATAAAATAGATTTTTCTGTTTGTAAATTGTAATTTCAGCAATTTTGAATGAGAACTTAACTGTTTTTGCACGAAAATTCACTTAAAAATCATGAAAAATAGCCGAAAATCCAGTACAAATATTTTCTACAGCAGTTTAAAGGCGCGTCACACAAAATTTTATTTCGCTTCGAAGCGAAAAAGGAATTTTAGCGATTTAACAAAATCCAGGCTTTTCAAAAAATCTAAAAACTCAAAATAAACAAAAAAAAACAAAAAACCAACAAAAATACACTTTTTTAACAGCACAATCCCTCCACACCACCGATGGCCGCGTTTTCAGGATTTTCTAGGCCACCGCGTCCCCTCCTCGTGATGCCTCGAAGTAAACACAATACGTCATTGGTGTAGTCTCTGTATTGACACACACACTTTTTCCCGAAAATTGGAGAAAAACCCCGCCGGCAAAAAAAACATATCTCGTCTTGAACGCTCCTTTTTTTATTGATTTTTTCCCTCTTTTTTTTGACCCAAATAAACGATTTTTGTCTCTTCTTTTTGTGCGTTTTTTGTGTCAATTTTCCAATAATTTTTTCCCCGATTTTTCTAAACTAAAAATTGCGAAATACCAGTCTAAATTCAATTTCAGCATGGTATTCAAAAAAGCGCCGTGCCTTTTTGGCTCGGCAATTTTGCTGGGACTGCTTCTAGCGGTGGCTGGAATTCTGTTGCTTATCGGAGTTCCAATTGATGGAATTGTGAATCGACAGGTCGTTGGGGTGAGTTTTTTAGAGAAAATTTAGGGACTATAAATCGAAGAAATAGCCCAAAAATCGACTTTTTTCGAGGGAAACTTGGCTTTTGGTTTCAAAAATGACAAAAATTGAATTAAGCTCATCGAAAGCTTCAAAA</canonical>
            <polymorphic>AACCCATTAAAAAATTTTTCTACAGTACCTTAAAGGCGCAAAACAAGAATTTTTGTTTGGTGCTTCGCAACGAAAAGCTTTTTTTTTGCGATTTTAGGGTGTTTTAGGCTATAAAATAGATTTTTCTGTTTGTAAATTGTAATTTCAGCAATTTTGAATGAGAACTTAACTGTTTTTGCACGAAAATTCACTTAAAAATCATGAAAAATAGCCGAAAATCCAGTACAAATATTTTCTACAGCAGTTTAAAGGCGCGTCACACAAAATTTTATTTCGCTTCGAAGCGAAAAAGGAATTTTAGCGATTTAACAAAATCCAGGCTTTTCAAAAAATCTAAAAACTCAAAATAAACAAAAAAAAACAAAAAACCAACAAAAATACACTTTTTTAACAGCACAATCCCTCCACACCACCGATGGCCGCGTTTTCAGGATTTTCTAGGCCACCGCGTCCCCTCCTCGTGATGCCTCGAAGTAAACACAATACGTCATTGGTGTAGYCTCTGTATTGACACACACACTTTTTCCCGAAAATTGGAGAAAAACCCCGCCGGCAAAAAAAACATATCTCGTCTTGAACGCTCCTTTTTTTATTGATTTTTTCCCTCTTTTTTTTGACCCAAATAAACGATTTTTGTCTCTTCTTTTTGTGCGTTTTTTGTGTCAATTTTCCAATAATTTTTTCCCCGATTTTTCTAAACTAAAAATTGCGAAATACCAGTCTAAATTCAATTTCAGCATGGTATTCAAAAAAGCGCCGTGCCTTTTTGGCTCGGCAATTTTGCTGGGACTGCTTCTAGCGGTGGCTGGAATTCTGTTGCTTATCGGAGTTCCAATTGATGGAATTGTGAATCGACAGGTCGTTGGGGTGAGTTTTTTAGAGAAAATTTAGGGACTATAAATCGAAGAAATAGCCCAAAAATCGACTTTTTTCGAGGGAAACTTGGCTTTTGGTTTCAAAAATGACAAAAATTGAATTAAGCTCATCGAAAGCTTCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAATTTTAGCGATTTAACAAA</pcr_primer_p1>
		<pcr_primer_p2>GCACAAAAAGAAGAGACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>361</pcr_amplicon_size>
		<canonical_amplicon>GGAATTTTAGCGATTTAACAAAATCCAGGCTTTTCAAAAAATCTAAAAACTCAAAATAAACAAAAAAAAACAAAAAACCAACAAAAATACACTTTTTTAACAGCACAATCCCTCCACACCACCGATGGCCGCGTTTTCAGGATTTTCTAGGCCACCGCGTCCCCTCCTCGTGATGCCTCGAAGTAAACACAATACGTCATTGGTGTAGTCTCTGTATTGACACACACACTTTTTCCCGAAAATTGGAGAAAAACCCCGCCGGCAAAAAAAACATATCTCGTCTTGAACGCTCCTTTTTTTATTGATTTTTTCCCTCTTTTTTTTGACCCAAATAAACGATTTTTGTCTCTTCTTTTTGTGC</canonical_amplicon>
		<polymorphic_amplicon>GGAATTTTAGCGATTTAACAAAATCCAGGCTTTTCAAAAAATCTAAAAACTCAAAATAAACAAAAAAAAACAAAAAACCAACAAAAATACACTTTTTTAACAGCACAATCCCTCCACACCACCGATGGCCGCGTTTTCAGGATTTTCTAGGCCACCGCGTCCCCTCCTCGTGATGCCTCGAAGTAAACACAATACGTCATTGGTGTAGYCTCTGTATTGACACACACACTTTTTCCCGAAAATTGGAGAAAAACCCCGCCGGCAAAAAAAACATATCTCGTCTTGAACGCTCCTTTTTTTATTGATTTTTTCCCTCTTTTTTTTGACCCAAATAAACGATTTTTGTCTCTTCTTTTTGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29454</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>82354</contig_pos>
        <strand>+</strand>
        <context>CCCCGCCGGC[A/G]AAAAAAACAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTATTGACACACACACTTTTTCCCGAAAATTGGAGAAAAACCCCGCCGGC</left_flank>
        <right_flank>AAAAAAACATATCTCGTCTTGAACGCTCCTTTTTTTATTGATTTTTTCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGTGCTTCGCAACGAAAAGCTTTTTTTTTGCGATTTTAGGGTGTTTTAGGCTATAAAATAGATTTTTCTGTTTGTAAATTGTAATTTCAGCAATTTTGAATGAGAACTTAACTGTTTTTGCACGAAAATTCACTTAAAAATCATGAAAAATAGCCGAAAATCCAGTACAAATATTTTCTACAGCAGTTTAAAGGCGCGTCACACAAAATTTTATTTCGCTTCGAAGCGAAAAAGGAATTTTAGCGATTTAACAAAATCCAGGCTTTTCAAAAAATCTAAAAACTCAAAATAAACAAAAAAAAACAAAAAACCAACAAAAATACACTTTTTTAACAGCACAATCCCTCCACACCACCGATGGCCGCGTTTTCAGGATTTTCTAGGCCACCGCGTCCCCTCCTCGTGATGCCTCGAAGTAAACACAATACGTCATTGGTGTAGTCTCTGTATTGACACACACACTTTTTCCCGAAAATTGGAGAAAAACCCCGCCGGCAAAAAAAACATATCTCGTCTTGAACGCTCCTTTTTTTATTGATTTTTTCCCTCTTTTTTTTGACCCAAATAAACGATTTTTGTCTCTTCTTTTTGTGCGTTTTTTGTGTCAATTTTCCAATAATTTTTTCCCCGATTTTTCTAAACTAAAAATTGCGAAATACCAGTCTAAATTCAATTTCAGCATGGTATTCAAAAAAGCGCCGTGCCTTTTTGGCTCGGCAATTTTGCTGGGACTGCTTCTAGCGGTGGCTGGAATTCTGTTGCTTATCGGAGTTCCAATTGATGGAATTGTGAATCGACAGGTCGTTGGGGTGAGTTTTTTAGAGAAAATTTAGGGACTATAAATCGAAGAAATAGCCCAAAAATCGACTTTTTTCGAGGGAAACTTGGCTTTTGGTTTCAAAAATGACAAAAATTGAATTAAGCTCATCGAAAGCTTCAAAATGAGCCCAAACACGACCAGATTCCGTTAATTTACAAGGTTACTGTACTTTTCGTG</canonical>
            <polymorphic>TTTGGTGCTTCGCAACGAAAAGCTTTTTTTTTGCGATTTTAGGGTGTTTTAGGCTATAAAATAGATTTTTCTGTTTGTAAATTGTAATTTCAGCAATTTTGAATGAGAACTTAACTGTTTTTGCACGAAAATTCACTTAAAAATCATGAAAAATAGCCGAAAATCCAGTACAAATATTTTCTACAGCAGTTTAAAGGCGCGTCACACAAAATTTTATTTCGCTTCGAAGCGAAAAAGGAATTTTAGCGATTTAACAAAATCCAGGCTTTTCAAAAAATCTAAAAACTCAAAATAAACAAAAAAAAACAAAAAACCAACAAAAATACACTTTTTTAACAGCACAATCCCTCCACACCACCGATGGCCGCGTTTTCAGGATTTTCTAGGCCACCGCGTCCCCTCCTCGTGATGCCTCGAAGTAAACACAATACGTCATTGGTGTAGTCTCTGTATTGACACACACACTTTTTCCCGAAAATTGGAGAAAAACCCCGCCGGCRAAAAAAACATATCTCGTCTTGAACGCTCCTTTTTTTATTGATTTTTTCCCTCTTTTTTTTGACCCAAATAAACGATTTTTGTCTCTTCTTTTTGTGCGTTTTTTGTGTCAATTTTCCAATAATTTTTTCCCCGATTTTTCTAAACTAAAAATTGCGAAATACCAGTCTAAATTCAATTTCAGCATGGTATTCAAAAAAGCGCCGTGCCTTTTTGGCTCGGCAATTTTGCTGGGACTGCTTCTAGCGGTGGCTGGAATTCTGTTGCTTATCGGAGTTCCAATTGATGGAATTGTGAATCGACAGGTCGTTGGGGTGAGTTTTTTAGAGAAAATTTAGGGACTATAAATCGAAGAAATAGCCCAAAAATCGACTTTTTTCGAGGGAAACTTGGCTTTTGGTTTCAAAAATGACAAAAATTGAATTAAGCTCATCGAAAGCTTCAAAATGAGCCCAAACACGACCAGATTCCGTTAATTTACAAGGTTACTGTACTTTTCGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGTATTGACACACACACTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAATACCATGCTGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTGTATTGACACACACACTTTTTCCCGAAAATTGGAGAAAAACCCCGCCGGCAAAAAAAACATATCTCGTCTTGAACGCTCCTTTTTTTATTGATTTTTTCCCTCTTTTTTTTGACCCAAATAAACGATTTTTGTCTCTTCTTTTTGTGCGTTTTTTGTGTCAATTTTCCAATAATTTTTTCCCCGATTTTTCTAAACTAAAAATTGCGAAATACCAGTCTAAATTCAATTTCAGCATGGTATTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTGTATTGACACACACACTTTTTCCCGAAAATTGGAGAAAAACCCCGCCGGCRAAAAAAACATATCTCGTCTTGAACGCTCCTTTTTTTATTGATTTTTTCCCTCTTTTTTTTGACCCAAATAAACGATTTTTGTCTCTTCTTTTTGTGCGTTTTTTGTGTCAATTTTCCAATAATTTTTTCCCCGATTTTTCTAAACTAAAAATTGCGAAATACCAGTCTAAATTCAATTTCAGCATGGTATTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29455</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>82379</contig_pos>
        <strand></strand>
        <context>CGTCTTGAAC[G/A]CTCCTTTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAATTGGAGAAAAACCCCGCCGGCAAAAAAAACATATCTCGTCTTGAAC</left_flank>
        <right_flank>CTCCTTTTTTTATTGATTTTTTCCCTCTTTTTTTTGACCCAAATAAACGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTGCGATTTTAGGGTGTTTTAGGCTATAAAATAGATTTTTCTGTTTGTAAATTGTAATTTCAGCAATTTTGAATGAGAACTTAACTGTTTTTGCACGAAAATTCACTTAAAAATCATGAAAAATAGCCGAAAATCCAGTACAAATATTTTCTACAGCAGTTTAAAGGCGCGTCACACAAAATTTTATTTCGCTTCGAAGCGAAAAAGGAATTTTAGCGATTTAACAAAATCCAGGCTTTTCAAAAAATCTAAAAACTCAAAATAAACAAAAAAAAACAAAAAACCAACAAAAATACACTTTTTTAACAGCACAATCCCTCCACACCACCGATGGCCGCGTTTTCAGGATTTTCTAGGCCACCGCGTCCCCTCCTCGTGATGCCTCGAAGTAAACACAATACGTCATTGGTGTAGTCTCTGTATTGACACACACACTTTTTCCCGAAAATTGGAGAAAAACCCCGCCGGCAAAAAAAACATATCTCGTCTTGAACGCTCCTTTTTTTATTGATTTTTTCCCTCTTTTTTTTGACCCAAATAAACGATTTTTGTCTCTTCTTTTTGTGCGTTTTTTGTGTCAATTTTCCAATAATTTTTTCCCCGATTTTTCTAAACTAAAAATTGCGAAATACCAGTCTAAATTCAATTTCAGCATGGTATTCAAAAAAGCGCCGTGCCTTTTTGGCTCGGCAATTTTGCTGGGACTGCTTCTAGCGGTGGCTGGAATTCTGTTGCTTATCGGAGTTCCAATTGATGGAATTGTGAATCGACAGGTCGTTGGGGTGAGTTTTTTAGAGAAAATTTAGGGACTATAAATCGAAGAAATAGCCCAAAAATCGACTTTTTTCGAGGGAAACTTGGCTTTTGGTTTCAAAAATGACAAAAATTGAATTAAGCTCATCGAAAGCTTCAAAATGAGCCCAAACACGACCAGATTCCGTTAATTTACAAGGTTACTGTACTTTTCGTGGTGGGACCCGTTTAGGCTCATTTTG</canonical>
            <polymorphic>TTTTTTTGCGATTTTAGGGTGTTTTAGGCTATAAAATAGATTTTTCTGTTTGTAAATTGTAATTTCAGCAATTTTGAATGAGAACTTAACTGTTTTTGCACGAAAATTCACTTAAAAATCATGAAAAATAGCCGAAAATCCAGTACAAATATTTTCTACAGCAGTTTAAAGGCGCGTCACACAAAATTTTATTTCGCTTCGAAGCGAAAAAGGAATTTTAGCGATTTAACAAAATCCAGGCTTTTCAAAAAATCTAAAAACTCAAAATAAACAAAAAAAAACAAAAAACCAACAAAAATACACTTTTTTAACAGCACAATCCCTCCACACCACCGATGGCCGCGTTTTCAGGATTTTCTAGGCCACCGCGTCCCCTCCTCGTGATGCCTCGAAGTAAACACAATACGTCATTGGTGTAGTCTCTGTATTGACACACACACTTTTTCCCGAAAATTGGAGAAAAACCCCGCCGGCAAAAAAAACATATCTCGTCTTGAACRCTCCTTTTTTTATTGATTTTTTCCCTCTTTTTTTTGACCCAAATAAACGATTTTTGTCTCTTCTTTTTGTGCGTTTTTTGTGTCAATTTTCCAATAATTTTTTCCCCGATTTTTCTAAACTAAAAATTGCGAAATACCAGTCTAAATTCAATTTCAGCATGGTATTCAAAAAAGCGCCGTGCCTTTTTGGCTCGGCAATTTTGCTGGGACTGCTTCTAGCGGTGGCTGGAATTCTGTTGCTTATCGGAGTTCCAATTGATGGAATTGTGAATCGACAGGTCGTTGGGGTGAGTTTTTTAGAGAAAATTTAGGGACTATAAATCGAAGAAATAGCCCAAAAATCGACTTTTTTCGAGGGAAACTTGGCTTTTGGTTTCAAAAATGACAAAAATTGAATTAAGCTCATCGAAAGCTTCAAAATGAGCCCAAACACGACCAGATTCCGTTAATTTACAAGGTTACTGTACTTTTCGTGGTGGGACCCGTTTAGGCTCATTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATTGACACACACACTTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAATACCATGCTGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTATTGACACACACACTTTTTCCCGAAAATTGGAGAAAAACCCCGCCGGCAAAAAAAACATATCTCGTCTTGAACGCTCCTTTTTTTATTGATTTTTTCCCTCTTTTTTTTGACCCAAATAAACGATTTTTGTCTCTTCTTTTTGTGCGTTTTTTGTGTCAATTTTCCAATAATTTTTTCCCCGATTTTTCTAAACTAAAAATTGCGAAATACCAGTCTAAATTCAATTTCAGCATGGTATTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGTATTGACACACACACTTTTTCCCGAAAATTGGAGAAAAACCCCGCCGGCAAAAAAAACATATCTCGTCTTGAACRCTCCTTTTTTTATTGATTTTTTCCCTCTTTTTTTTGACCCAAATAAACGATTTTTGTCTCTTCTTTTTGTGCGTTTTTTGTGTCAATTTTCCAATAATTTTTTCCCCGATTTTTCTAAACTAAAAATTGCGAAATACCAGTCTAAATTCAATTTCAGCATGGTATTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29456</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>82429</contig_pos>
        <strand>+</strand>
        <context>CAAATAAACG[A/C]TTTTTGTCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCTCCTTTTTTTATTGATTTTTTCCCTCTTTTTTTTGACCCAAATAAACG</left_flank>
        <right_flank>TTTTTGTCTCTTCTTTTTGTGCGTTTTTTGTGTCAATTTTCCAATAATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTAAATTGTAATTTCAGCAATTTTGAATGAGAACTTAACTGTTTTTGCACGAAAATTCACTTAAAAATCATGAAAAATAGCCGAAAATCCAGTACAAATATTTTCTACAGCAGTTTAAAGGCGCGTCACACAAAATTTTATTTCGCTTCGAAGCGAAAAAGGAATTTTAGCGATTTAACAAAATCCAGGCTTTTCAAAAAATCTAAAAACTCAAAATAAACAAAAAAAAACAAAAAACCAACAAAAATACACTTTTTTAACAGCACAATCCCTCCACACCACCGATGGCCGCGTTTTCAGGATTTTCTAGGCCACCGCGTCCCCTCCTCGTGATGCCTCGAAGTAAACACAATACGTCATTGGTGTAGTCTCTGTATTGACACACACACTTTTTCCCGAAAATTGGAGAAAAACCCCGCCGGCAAAAAAAACATATCTCGTCTTGAACGCTCCTTTTTTTATTGATTTTTTCCCTCTTTTTTTTGACCCAAATAAACGATTTTTGTCTCTTCTTTTTGTGCGTTTTTTGTGTCAATTTTCCAATAATTTTTTCCCCGATTTTTCTAAACTAAAAATTGCGAAATACCAGTCTAAATTCAATTTCAGCATGGTATTCAAAAAAGCGCCGTGCCTTTTTGGCTCGGCAATTTTGCTGGGACTGCTTCTAGCGGTGGCTGGAATTCTGTTGCTTATCGGAGTTCCAATTGATGGAATTGTGAATCGACAGGTCGTTGGGGTGAGTTTTTTAGAGAAAATTTAGGGACTATAAATCGAAGAAATAGCCCAAAAATCGACTTTTTTCGAGGGAAACTTGGCTTTTGGTTTCAAAAATGACAAAAATTGAATTAAGCTCATCGAAAGCTTCAAAATGAGCCCAAACACGACCAGATTCCGTTAATTTACAAGGTTACTGTACTTTTCGTGGTGGGACCCGTTTAGGCTCATTTTGAAGCTCTTAACAAGCTGAAAAAGCTGAAAATTGAATTTCTGAATCAAATT</canonical>
            <polymorphic>TGTAAATTGTAATTTCAGCAATTTTGAATGAGAACTTAACTGTTTTTGCACGAAAATTCACTTAAAAATCATGAAAAATAGCCGAAAATCCAGTACAAATATTTTCTACAGCAGTTTAAAGGCGCGTCACACAAAATTTTATTTCGCTTCGAAGCGAAAAAGGAATTTTAGCGATTTAACAAAATCCAGGCTTTTCAAAAAATCTAAAAACTCAAAATAAACAAAAAAAAACAAAAAACCAACAAAAATACACTTTTTTAACAGCACAATCCCTCCACACCACCGATGGCCGCGTTTTCAGGATTTTCTAGGCCACCGCGTCCCCTCCTCGTGATGCCTCGAAGTAAACACAATACGTCATTGGTGTAGTCTCTGTATTGACACACACACTTTTTCCCGAAAATTGGAGAAAAACCCCGCCGGCAAAAAAAACATATCTCGTCTTGAACGCTCCTTTTTTTATTGATTTTTTCCCTCTTTTTTTTGACCCAAATAAACGMTTTTTGTCTCTTCTTTTTGTGCGTTTTTTGTGTCAATTTTCCAATAATTTTTTCCCCGATTTTTCTAAACTAAAAATTGCGAAATACCAGTCTAAATTCAATTTCAGCATGGTATTCAAAAAAGCGCCGTGCCTTTTTGGCTCGGCAATTTTGCTGGGACTGCTTCTAGCGGTGGCTGGAATTCTGTTGCTTATCGGAGTTCCAATTGATGGAATTGTGAATCGACAGGTCGTTGGGGTGAGTTTTTTAGAGAAAATTTAGGGACTATAAATCGAAGAAATAGCCCAAAAATCGACTTTTTTCGAGGGAAACTTGGCTTTTGGTTTCAAAAATGACAAAAATTGAATTAAGCTCATCGAAAGCTTCAAAATGAGCCCAAACACGACCAGATTCCGTTAATTTACAAGGTTACTGTACTTTTCGTGGTGGGACCCGTTTAGGCTCATTTTGAAGCTCTTAACAAGCTGAAAAAGCTGAAAATTGAATTTCTGAATCAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATTGACACACACACTTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAATACCATGCTGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGTATTGACACACACACTTTTTCCCGAAAATTGGAGAAAAACCCCGCCGGCAAAAAAAACATATCTCGTCTTGAACGCTCCTTTTTTTATTGATTTTTTCCCTCTTTTTTTTGACCCAAATAAACGATTTTTGTCTCTTCTTTTTGTGCGTTTTTTGTGTCAATTTTCCAATAATTTTTTCCCCGATTTTTCTAAACTAAAAATTGCGAAATACCAGTCTAAATTCAATTTCAGCATGGTATTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGTATTGACACACACACTTTTTCCCGAAAATTGGAGAAAAACCCCGCCGGCAAAAAAAACATATCTCGTCTTGAACGCTCCTTTTTTTATTGATTTTTTCCCTCTTTTTTTTGACCCAAATAAACGMTTTTTGTCTCTTCTTTTTGTGCGTTTTTTGTGTCAATTTTCCAATAATTTTTTCCCCGATTTTTCTAAACTAAAAATTGCGAAATACCAGTCTAAATTCAATTTCAGCATGGTATTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29457</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>82499</contig_pos>
        <strand>+</strand>
        <context>TTTTTCTAAA[A/C]TAAAAATTGC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCGTTTTTTGTGTCAATTTTCCAATAATTTTTTCCCCGATTTTTCTAAA</left_flank>
        <right_flank>TAAAAATTGCGAAATACCAGTCTAAATTCAATTTCAGCATGGTATTCAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAAAAATAGCCGAAAATCCAGTACAAATATTTTCTACAGCAGTTTAAAGGCGCGTCACACAAAATTTTATTTCGCTTCGAAGCGAAAAAGGAATTTTAGCGATTTAACAAAATCCAGGCTTTTCAAAAAATCTAAAAACTCAAAATAAACAAAAAAAAACAAAAAACCAACAAAAATACACTTTTTTAACAGCACAATCCCTCCACACCACCGATGGCCGCGTTTTCAGGATTTTCTAGGCCACCGCGTCCCCTCCTCGTGATGCCTCGAAGTAAACACAATACGTCATTGGTGTAGTCTCTGTATTGACACACACACTTTTTCCCGAAAATTGGAGAAAAACCCCGCCGGCAAAAAAAACATATCTCGTCTTGAACGCTCCTTTTTTTATTGATTTTTTCCCTCTTTTTTTTGACCCAAATAAACGATTTTTGTCTCTTCTTTTTGTGCGTTTTTTGTGTCAATTTTCCAATAATTTTTTCCCCGATTTTTCTAAACTAAAAATTGCGAAATACCAGTCTAAATTCAATTTCAGCATGGTATTCAAAAAAGCGCCGTGCCTTTTTGGCTCGGCAATTTTGCTGGGACTGCTTCTAGCGGTGGCTGGAATTCTGTTGCTTATCGGAGTTCCAATTGATGGAATTGTGAATCGACAGGTCGTTGGGGTGAGTTTTTTAGAGAAAATTTAGGGACTATAAATCGAAGAAATAGCCCAAAAATCGACTTTTTTCGAGGGAAACTTGGCTTTTGGTTTCAAAAATGACAAAAATTGAATTAAGCTCATCGAAAGCTTCAAAATGAGCCCAAACACGACCAGATTCCGTTAATTTACAAGGTTACTGTACTTTTCGTGGTGGGACCCGTTTAGGCTCATTTTGAAGCTCTTAACAAGCTGAAAAAGCTGAAAATTGAATTTCTGAATCAAATTCGGCTTGGGAATGTAAAAAATCCTTCAAAAATATAAACATTAGATCTTTGGCCCAAAATTCTAATGAGCC</canonical>
            <polymorphic>ATGAAAAATAGCCGAAAATCCAGTACAAATATTTTCTACAGCAGTTTAAAGGCGCGTCACACAAAATTTTATTTCGCTTCGAAGCGAAAAAGGAATTTTAGCGATTTAACAAAATCCAGGCTTTTCAAAAAATCTAAAAACTCAAAATAAACAAAAAAAAACAAAAAACCAACAAAAATACACTTTTTTAACAGCACAATCCCTCCACACCACCGATGGCCGCGTTTTCAGGATTTTCTAGGCCACCGCGTCCCCTCCTCGTGATGCCTCGAAGTAAACACAATACGTCATTGGTGTAGTCTCTGTATTGACACACACACTTTTTCCCGAAAATTGGAGAAAAACCCCGCCGGCAAAAAAAACATATCTCGTCTTGAACGCTCCTTTTTTTATTGATTTTTTCCCTCTTTTTTTTGACCCAAATAAACGATTTTTGTCTCTTCTTTTTGTGCGTTTTTTGTGTCAATTTTCCAATAATTTTTTCCCCGATTTTTCTAAAMTAAAAATTGCGAAATACCAGTCTAAATTCAATTTCAGCATGGTATTCAAAAAAGCGCCGTGCCTTTTTGGCTCGGCAATTTTGCTGGGACTGCTTCTAGCGGTGGCTGGAATTCTGTTGCTTATCGGAGTTCCAATTGATGGAATTGTGAATCGACAGGTCGTTGGGGTGAGTTTTTTAGAGAAAATTTAGGGACTATAAATCGAAGAAATAGCCCAAAAATCGACTTTTTTCGAGGGAAACTTGGCTTTTGGTTTCAAAAATGACAAAAATTGAATTAAGCTCATCGAAAGCTTCAAAATGAGCCCAAACACGACCAGATTCCGTTAATTTACAAGGTTACTGTACTTTTCGTGGTGGGACCCGTTTAGGCTCATTTTGAAGCTCTTAACAAGCTGAAAAAGCTGAAAATTGAATTTCTGAATCAAATTCGGCTTGGGAATGTAAAAAATCCTTCAAAAATATAAACATTAGATCTTTGGCCCAAAATTCTAATGAGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTATTGACACACACACTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAATACCATGCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGTATTGACACACACACTTTTTCCCGAAAATTGGAGAAAAACCCCGCCGGCAAAAAAAACATATCTCGTCTTGAACGCTCCTTTTTTTATTGATTTTTTCCCTCTTTTTTTTGACCCAAATAAACGATTTTTGTCTCTTCTTTTTGTGCGTTTTTTGTGTCAATTTTCCAATAATTTTTTCCCCGATTTTTCTAAACTAAAAATTGCGAAATACCAGTCTAAATTCAATTTCAGCATGGTATTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CTGTATTGACACACACACTTTTTCCCGAAAATTGGAGAAAAACCCCGCCGGCAAAAAAAACATATCTCGTCTTGAACGCTCCTTTTTTTATTGATTTTTTCCCTCTTTTTTTTGACCCAAATAAACGATTTTTGTCTCTTCTTTTTGTGCGTTTTTTGTGTCAATTTTCCAATAATTTTTTCCCCGATTTTTCTAAAMTAAAAATTGCGAAATACCAGTCTAAATTCAATTTCAGCATGGTATTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29458</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>82615</contig_pos>
        <strand>+</strand>
        <context>CTGGAATTCT[C/G]TTGCTTATCG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTGGCTCGGCAATTTTGCTGGGACTGCTTCTAGCGGTGGCTGGAATTCT</left_flank>
        <right_flank>TTGCTTATCGGAGTTCCAATTGATGGAATTGTGAATCGACAGGTCGTTGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGGCTTTTCAAAAAATCTAAAAACTCAAAATAAACAAAAAAAAACAAAAAACCAACAAAAATACACTTTTTTAACAGCACAATCCCTCCACACCACCGATGGCCGCGTTTTCAGGATTTTCTAGGCCACCGCGTCCCCTCCTCGTGATGCCTCGAAGTAAACACAATACGTCATTGGTGTAGTCTCTGTATTGACACACACACTTTTTCCCGAAAATTGGAGAAAAACCCCGCCGGCAAAAAAAACATATCTCGTCTTGAACGCTCCTTTTTTTATTGATTTTTTCCCTCTTTTTTTTGACCCAAATAAACGATTTTTGTCTCTTCTTTTTGTGCGTTTTTTGTGTCAATTTTCCAATAATTTTTTCCCCGATTTTTCTAAACTAAAAATTGCGAAATACCAGTCTAAATTCAATTTCAGCATGGTATTCAAAAAAGCGCCGTGCCTTTTTGGCTCGGCAATTTTGCTGGGACTGCTTCTAGCGGTGGCTGGAATTCTGTTGCTTATCGGAGTTCCAATTGATGGAATTGTGAATCGACAGGTCGTTGGGGTGAGTTTTTTAGAGAAAATTTAGGGACTATAAATCGAAGAAATAGCCCAAAAATCGACTTTTTTCGAGGGAAACTTGGCTTTTGGTTTCAAAAATGACAAAAATTGAATTAAGCTCATCGAAAGCTTCAAAATGAGCCCAAACACGACCAGATTCCGTTAATTTACAAGGTTACTGTACTTTTCGTGGTGGGACCCGTTTAGGCTCATTTTGAAGCTCTTAACAAGCTGAAAAAGCTGAAAATTGAATTTCTGAATCAAATTCGGCTTGGGAATGTAAAAAATCCTTCAAAAATATAAACATTAGATCTTTGGCCCAAAATTCTAATGAGCCAATTTATGAGCCAGAATTTATTAGTAGATAGATATTGGTAAGCAAAAATCGCTGAAAATCGAAAATTTTCAATACTATAACTCTATGAACTTTTCCAATTTTGATTTCATGACGCA</canonical>
            <polymorphic>CAGGCTTTTCAAAAAATCTAAAAACTCAAAATAAACAAAAAAAAACAAAAAACCAACAAAAATACACTTTTTTAACAGCACAATCCCTCCACACCACCGATGGCCGCGTTTTCAGGATTTTCTAGGCCACCGCGTCCCCTCCTCGTGATGCCTCGAAGTAAACACAATACGTCATTGGTGTAGTCTCTGTATTGACACACACACTTTTTCCCGAAAATTGGAGAAAAACCCCGCCGGCAAAAAAAACATATCTCGTCTTGAACGCTCCTTTTTTTATTGATTTTTTCCCTCTTTTTTTTGACCCAAATAAACGATTTTTGTCTCTTCTTTTTGTGCGTTTTTTGTGTCAATTTTCCAATAATTTTTTCCCCGATTTTTCTAAACTAAAAATTGCGAAATACCAGTCTAAATTCAATTTCAGCATGGTATTCAAAAAAGCGCCGTGCCTTTTTGGCTCGGCAATTTTGCTGGGACTGCTTCTAGCGGTGGCTGGAATTCTSTTGCTTATCGGAGTTCCAATTGATGGAATTGTGAATCGACAGGTCGTTGGGGTGAGTTTTTTAGAGAAAATTTAGGGACTATAAATCGAAGAAATAGCCCAAAAATCGACTTTTTTCGAGGGAAACTTGGCTTTTGGTTTCAAAAATGACAAAAATTGAATTAAGCTCATCGAAAGCTTCAAAATGAGCCCAAACACGACCAGATTCCGTTAATTTACAAGGTTACTGTACTTTTCGTGGTGGGACCCGTTTAGGCTCATTTTGAAGCTCTTAACAAGCTGAAAAAGCTGAAAATTGAATTTCTGAATCAAATTCGGCTTGGGAATGTAAAAAATCCTTCAAAAATATAAACATTAGATCTTTGGCCCAAAATTCTAATGAGCCAATTTATGAGCCAGAATTTATTAGTAGATAGATATTGGTAAGCAAAAATCGCTGAAAATCGAAAATTTTCAATACTATAACTCTATGAACTTTTCCAATTTTGATTTCATGACGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTGCGAAATACCAGTCTA</pcr_primer_p1>
		<pcr_primer_p2>GGGCTATTTCTTCGATTTATAGT</pcr_primer_p2>
		<pcr_amplicon_size>214</pcr_amplicon_size>
		<canonical_amplicon>AAAATTGCGAAATACCAGTCTAAATTCAATTTCAGCATGGTATTCAAAAAAGCGCCGTGCCTTTTTGGCTCGGCAATTTTGCTGGGACTGCTTCTAGCGGTGGCTGGAATTCTGTTGCTTATCGGAGTTCCAATTGATGGAATTGTGAATCGACAGGTCGTTGGGGTGAGTTTTTTAGAGAAAATTTAGGGACTATAAATCGAAGAAATAGCCC</canonical_amplicon>
		<polymorphic_amplicon>AAAATTGCGAAATACCAGTCTAAATTCAATTTCAGCATGGTATTCAAAAAAGCGCCGTGCCTTTTTGGCTCGGCAATTTTGCTGGGACTGCTTCTAGCGGTGGCTGGAATTCTSTTGCTTATCGGAGTTCCAATTGATGGAATTGTGAATCGACAGGTCGTTGGGGTGAGTTTTTTAGAGAAAATTTAGGGACTATAAATCGAAGAAATAGCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29459</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>82681</contig_pos>
        <strand>+</strand>
        <context>GTTTTTTAGA[A/G]AAAATTTAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAATTGATGGAATTGTGAATCGACAGGTCGTTGGGGTGAGTTTTTTAGA</left_flank>
        <right_flank>AAAATTTAGGGACTATAAATCGAAGAAATAGCCCAAAAATCGACTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTTTAACAGCACAATCCCTCCACACCACCGATGGCCGCGTTTTCAGGATTTTCTAGGCCACCGCGTCCCCTCCTCGTGATGCCTCGAAGTAAACACAATACGTCATTGGTGTAGTCTCTGTATTGACACACACACTTTTTCCCGAAAATTGGAGAAAAACCCCGCCGGCAAAAAAAACATATCTCGTCTTGAACGCTCCTTTTTTTATTGATTTTTTCCCTCTTTTTTTTGACCCAAATAAACGATTTTTGTCTCTTCTTTTTGTGCGTTTTTTGTGTCAATTTTCCAATAATTTTTTCCCCGATTTTTCTAAACTAAAAATTGCGAAATACCAGTCTAAATTCAATTTCAGCATGGTATTCAAAAAAGCGCCGTGCCTTTTTGGCTCGGCAATTTTGCTGGGACTGCTTCTAGCGGTGGCTGGAATTCTGTTGCTTATCGGAGTTCCAATTGATGGAATTGTGAATCGACAGGTCGTTGGGGTGAGTTTTTTAGAGAAAATTTAGGGACTATAAATCGAAGAAATAGCCCAAAAATCGACTTTTTTCGAGGGAAACTTGGCTTTTGGTTTCAAAAATGACAAAAATTGAATTAAGCTCATCGAAAGCTTCAAAATGAGCCCAAACACGACCAGATTCCGTTAATTTACAAGGTTACTGTACTTTTCGTGGTGGGACCCGTTTAGGCTCATTTTGAAGCTCTTAACAAGCTGAAAAAGCTGAAAATTGAATTTCTGAATCAAATTCGGCTTGGGAATGTAAAAAATCCTTCAAAAATATAAACATTAGATCTTTGGCCCAAAATTCTAATGAGCCAATTTATGAGCCAGAATTTATTAGTAGATAGATATTGGTAAGCAAAAATCGCTGAAAATCGAAAATTTTCAATACTATAACTCTATGAACTTTTCCAATTTTGATTTCATGACGCAATTTTTGAAACCAGCACGAAAAATGCTTTAAAACGAGCCTAAACTCGACTAGATTCGCTCAAATTT</canonical>
            <polymorphic>CTTTTTTAACAGCACAATCCCTCCACACCACCGATGGCCGCGTTTTCAGGATTTTCTAGGCCACCGCGTCCCCTCCTCGTGATGCCTCGAAGTAAACACAATACGTCATTGGTGTAGTCTCTGTATTGACACACACACTTTTTCCCGAAAATTGGAGAAAAACCCCGCCGGCAAAAAAAACATATCTCGTCTTGAACGCTCCTTTTTTTATTGATTTTTTCCCTCTTTTTTTTGACCCAAATAAACGATTTTTGTCTCTTCTTTTTGTGCGTTTTTTGTGTCAATTTTCCAATAATTTTTTCCCCGATTTTTCTAAACTAAAAATTGCGAAATACCAGTCTAAATTCAATTTCAGCATGGTATTCAAAAAAGCGCCGTGCCTTTTTGGCTCGGCAATTTTGCTGGGACTGCTTCTAGCGGTGGCTGGAATTCTGTTGCTTATCGGAGTTCCAATTGATGGAATTGTGAATCGACAGGTCGTTGGGGTGAGTTTTTTAGARAAAATTTAGGGACTATAAATCGAAGAAATAGCCCAAAAATCGACTTTTTTCGAGGGAAACTTGGCTTTTGGTTTCAAAAATGACAAAAATTGAATTAAGCTCATCGAAAGCTTCAAAATGAGCCCAAACACGACCAGATTCCGTTAATTTACAAGGTTACTGTACTTTTCGTGGTGGGACCCGTTTAGGCTCATTTTGAAGCTCTTAACAAGCTGAAAAAGCTGAAAATTGAATTTCTGAATCAAATTCGGCTTGGGAATGTAAAAAATCCTTCAAAAATATAAACATTAGATCTTTGGCCCAAAATTCTAATGAGCCAATTTATGAGCCAGAATTTATTAGTAGATAGATATTGGTAAGCAAAAATCGCTGAAAATCGAAAATTTTCAATACTATAACTCTATGAACTTTTCCAATTTTGATTTCATGACGCAATTTTTGAAACCAGCACGAAAAATGCTTTAAAACGAGCCTAAACTCGACTAGATTCGCTCAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTATCGGAGTTCCAATTGAT</pcr_primer_p1>
		<pcr_primer_p2>TAAATTGGCTCATTAGAATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>387</pcr_amplicon_size>
		<canonical_amplicon>CTTATCGGAGTTCCAATTGATGGAATTGTGAATCGACAGGTCGTTGGGGTGAGTTTTTTAGAGAAAATTTAGGGACTATAAATCGAAGAAATAGCCCAAAAATCGACTTTTTTCGAGGGAAACTTGGCTTTTGGTTTCAAAAATGACAAAAATTGAATTAAGCTCATCGAAAGCTTCAAAATGAGCCCAAACACGACCAGATTCCGTTAATTTACAAGGTTACTGTACTTTTCGTGGTGGGACCCGTTTAGGCTCATTTTGAAGCTCTTAACAAGCTGAAAAAGCTGAAAATTGAATTTCTGAATCAAATTCGGCTTGGGAATGTAAAAAATCCTTCAAAAATATAAACATTAGATCTTTGGCCCAAAATTCTAATGAGCCAATTTA</canonical_amplicon>
		<polymorphic_amplicon>CTTATCGGAGTTCCAATTGATGGAATTGTGAATCGACAGGTCGTTGGGGTGAGTTTTTTAGARAAAATTTAGGGACTATAAATCGAAGAAATAGCCCAAAAATCGACTTTTTTCGAGGGAAACTTGGCTTTTGGTTTCAAAAATGACAAAAATTGAATTAAGCTCATCGAAAGCTTCAAAATGAGCCCAAACACGACCAGATTCCGTTAATTTACAAGGTTACTGTACTTTTCGTGGTGGGACCCGTTTAGGCTCATTTTGAAGCTCTTAACAAGCTGAAAAAGCTGAAAATTGAATTTCTGAATCAAATTCGGCTTGGGAATGTAAAAAATCCTTCAAAAATATAAACATTAGATCTTTGGCCCAAAATTCTAATGAGCCAATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29460</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>106940</contig_pos>
        <strand></strand>
        <context>GGGGAGATAT[T/G]ATAGAATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATTTCGAATCGTTTGGTACTAAAATCAAGCTTGACCGTGAGGGGAGATAT</left_flank>
        <right_flank>ATAGAATTTTAATCATTGGTTTTGAAAGCCTTGCGGCCGCGGCCCACCGT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGATTGTGTCAGTAATTGCGCTCTAGCAAATCTCAAAACTGTAGTTTTCAAAAATTTAAAGTACAAAAATGATTAACTTAAAATTTGCGTTTTAATGATGTATTGTTATTGAAAATTGATTAAACTTGATATGAGATATGCACTCTTCAAAAAAATAGAAAATTTCGAAAAAAAATTTTTTTTCCAAAAATGTTTCCAAATGTGTTCCTAACCTAATTTTCATTGTACTTATCAATTTTTCAACTTATTTTTGTTCATTTTCACCTCTAAACCGGCTAATTTTCCAGGGGAATGTCCGATGACGAAACCATGTCTTCAGAACTCCCAGATCCTCCGCCGTTTAAACAGATCGACCAGTGGTTGTCAACCATCCGGGTTCATGAGTGTACAAAGGCTTTTGCATTACTTGAAGCGGTAAGAAATTTATAATTTTTAAAATTTTTTTAAAATTTCGAATCGTTTGGTACTAAAATCAAGCTTGACCGTGAGGGGAGATATTATAGAATTTTAATCATTGGTTTTGAAAGCCTTGCGGCCGCGGCCCACCGTAACCTACAACATTGATTTTTATACGAAAATGATTCTCAAAATTTGAGCTACAGGAGTCTATAAAGTTTTTAGCTAGATTCCAATTTTGAAGTTAGTTACAGTGCAAAACATAAAGCATGTCTTTCGCTCAGTAGTTTGAGGCGGTATATGAAGTTTAGTCTCTGATTTCACACAGGAATTTGAAGACTTTTGTAGAAAGTTTTATATCCAAATGAACTGTATAACATCAGCTACAAGGACATATACTCATCTTTGTAAAATTCTAATTCTTAAGCAAGTTACAGTACCAAATGCTATACATACCTATTTTTGTGGTCCACTGCCAGAGACAGTGACACAATTGGTTCGACGTCGAAGACAAGAGAGAAAACGATGAAGAGTTCAACGAATGTGAGGAATTAGAAACTGTGCACCTAAATGTCAATAGAAAGAACATTGACTTATTACTAA</canonical>
            <polymorphic>ACGATTGTGTCAGTAATTGCGCTCTAGCAAATCTCAAAACTGTAGTTTTCAAAAATTTAAAGTACAAAAATGATTAACTTAAAATTTGCGTTTTAATGATGTATTGTTATTGAAAATTGATTAAACTTGATATGAGATATGCACTCTTCAAAAAAATAGAAAATTTCGAAAAAAAATTTTTTTTCCAAAAATGTTTCCAAATGTGTTCCTAACCTAATTTTCATTGTACTTATCAATTTTTCAACTTATTTTTGTTCATTTTCACCTCTAAACCGGCTAATTTTCCAGGGGAATGTCCGATGACGAAACCATGTCTTCAGAACTCCCAGATCCTCCGCCGTTTAAACAGATCGACCAGTGGTTGTCAACCATCCGGGTTCATGAGTGTACAAAGGCTTTTGCATTACTTGAAGCGGTAAGAAATTTATAATTTTTAAAATTTTTTTAAAATTTCGAATCGTTTGGTACTAAAATCAAGCTTGACCGTGAGGGGAGATATKATAGAATTTTAATCATTGGTTTTGAAAGCCTTGCGGCCGCGGCCCACCGTAACCTACAACATTGATTTTTATACGAAAATGATTCTCAAAATTTGAGCTACAGGAGTCTATAAAGTTTTTAGCTAGATTCCAATTTTGAAGTTAGTTACAGTGCAAAACATAAAGCATGTCTTTCGCTCAGTAGTTTGAGGCGGTATATGAAGTTTAGTCTCTGATTTCACACAGGAATTTGAAGACTTTTGTAGAAAGTTTTATATCCAAATGAACTGTATAACATCAGCTACAAGGACATATACTCATCTTTGTAAAATTCTAATTCTTAAGCAAGTTACAGTACCAAATGCTATACATACCTATTTTTGTGGTCCACTGCCAGAGACAGTGACACAATTGGTTCGACGTCGAAGACAAGAGAGAAAACGATGAAGAGTTCAACGAATGTGAGGAATTAGAAACTGTGCACCTAAATGTCAATAGAAAGAACATTGACTTATTACTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACAAAGGCTTTTGCATTACT</pcr_primer_p1>
		<pcr_primer_p2>CAAAATTGGAATCTAGCTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GTACAAAGGCTTTTGCATTACTTGAAGCGGTAAGAAATTTATAATTTTTAAAATTTTTTTAAAATTTCGAATCGTTTGGTACTAAAATCAAGCTTGACCGTGAGGGGAGATATTATAGAATTTTAATCATTGGTTTTGAAAGCCTTGCGGCCGCGGCCCACCGTAACCTACAACATTGATTTTTATACGAAAATGATTCTCAAAATTTGAGCTACAGGAGTCTATAAAGTTTTTAGCTAGATTCCAATTTTG</canonical_amplicon>
		<polymorphic_amplicon>GTACAAAGGCTTTTGCATTACTTGAAGCGGTAAGAAATTTATAATTTTTAAAATTTTTTTAAAATTTCGAATCGTTTGGTACTAAAATCAAGCTTGACCGTGAGGGGAGATATKATAGAATTTTAATCATTGGTTTTGAAAGCCTTGCGGCCGCGGCCCACCGTAACCTACAACATTGATTTTTATACGAAAATGATTCTCAAAATTTGAGCTACAGGAGTCTATAAAGTTTTTAGCTAGATTCCAATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29461</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>107115</contig_pos>
        <strand></strand>
        <context>GCATGTCTTT[C/T]GCTCAGTAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGATTCCAATTTTGAAGTTAGTTACAGTGCAAAACATAAAGCATGTCTTT</left_flank>
        <right_flank>GCTCAGTAGTTTGAGGCGGTATATGAAGTTTAGTCTCTGATTTCACACAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTTTCCAAAAATGTTTCCAAATGTGTTCCTAACCTAATTTTCATTGTACTTATCAATTTTTCAACTTATTTTTGTTCATTTTCACCTCTAAACCGGCTAATTTTCCAGGGGAATGTCCGATGACGAAACCATGTCTTCAGAACTCCCAGATCCTCCGCCGTTTAAACAGATCGACCAGTGGTTGTCAACCATCCGGGTTCATGAGTGTACAAAGGCTTTTGCATTACTTGAAGCGGTAAGAAATTTATAATTTTTAAAATTTTTTTAAAATTTCGAATCGTTTGGTACTAAAATCAAGCTTGACCGTGAGGGGAGATATTATAGAATTTTAATCATTGGTTTTGAAAGCCTTGCGGCCGCGGCCCACCGTAACCTACAACATTGATTTTTATACGAAAATGATTCTCAAAATTTGAGCTACAGGAGTCTATAAAGTTTTTAGCTAGATTCCAATTTTGAAGTTAGTTACAGTGCAAAACATAAAGCATGTCTTTCGCTCAGTAGTTTGAGGCGGTATATGAAGTTTAGTCTCTGATTTCACACAGGAATTTGAAGACTTTTGTAGAAAGTTTTATATCCAAATGAACTGTATAACATCAGCTACAAGGACATATACTCATCTTTGTAAAATTCTAATTCTTAAGCAAGTTACAGTACCAAATGCTATACATACCTATTTTTGTGGTCCACTGCCAGAGACAGTGACACAATTGGTTCGACGTCGAAGACAAGAGAGAAAACGATGAAGAGTTCAACGAATGTGAGGAATTAGAAACTGTGCACCTAAATGTCAATAGAAAGAACATTGACTTATTACTAAGTCTTTATTAAATATAATTATAGAGAAAAGGTTAGCGAAAGATGACTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCACGCCTTTTATGTATGCAAT</canonical>
            <polymorphic>ATTTTTTTTCCAAAAATGTTTCCAAATGTGTTCCTAACCTAATTTTCATTGTACTTATCAATTTTTCAACTTATTTTTGTTCATTTTCACCTCTAAACCGGCTAATTTTCCAGGGGAATGTCCGATGACGAAACCATGTCTTCAGAACTCCCAGATCCTCCGCCGTTTAAACAGATCGACCAGTGGTTGTCAACCATCCGGGTTCATGAGTGTACAAAGGCTTTTGCATTACTTGAAGCGGTAAGAAATTTATAATTTTTAAAATTTTTTTAAAATTTCGAATCGTTTGGTACTAAAATCAAGCTTGACCGTGAGGGGAGATATTATAGAATTTTAATCATTGGTTTTGAAAGCCTTGCGGCCGCGGCCCACCGTAACCTACAACATTGATTTTTATACGAAAATGATTCTCAAAATTTGAGCTACAGGAGTCTATAAAGTTTTTAGCTAGATTCCAATTTTGAAGTTAGTTACAGTGCAAAACATAAAGCATGTCTTTYGCTCAGTAGTTTGAGGCGGTATATGAAGTTTAGTCTCTGATTTCACACAGGAATTTGAAGACTTTTGTAGAAAGTTTTATATCCAAATGAACTGTATAACATCAGCTACAAGGACATATACTCATCTTTGTAAAATTCTAATTCTTAAGCAAGTTACAGTACCAAATGCTATACATACCTATTTTTGTGGTCCACTGCCAGAGACAGTGACACAATTGGTTCGACGTCGAAGACAAGAGAGAAAACGATGAAGAGTTCAACGAATGTGAGGAATTAGAAACTGTGCACCTAAATGTCAATAGAAAGAACATTGACTTATTACTAAGTCTTTATTAAATATAATTATAGAGAAAAGGTTAGCGAAAGATGACTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCACGCCTTTTATGTATGCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTAACCTACAACATTGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAGTATATGTCCTTGTAGCTGATG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CGTAACCTACAACATTGATTTTTATACGAAAATGATTCTCAAAATTTGAGCTACAGGAGTCTATAAAGTTTTTAGCTAGATTCCAATTTTGAAGTTAGTTACAGTGCAAAACATAAAGCATGTCTTTCGCTCAGTAGTTTGAGGCGGTATATGAAGTTTAGTCTCTGATTTCACACAGGAATTTGAAGACTTTTGTAGAAAGTTTTATATCCAAATGAACTGTATAACATCAGCTACAAGGACATATACTC</canonical_amplicon>
		<polymorphic_amplicon>CGTAACCTACAACATTGATTTTTATACGAAAATGATTCTCAAAATTTGAGCTACAGGAGTCTATAAAGTTTTTAGCTAGATTCCAATTTTGAAGTTAGTTACAGTGCAAAACATAAAGCATGTCTTTYGCTCAGTAGTTTGAGGCGGTATATGAAGTTTAGTCTCTGATTTCACACAGGAATTTGAAGACTTTTGTAGAAAGTTTTATATCCAAATGAACTGTATAACATCAGCTACAAGGACATATACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29462</snp_id>
        <super_contig>c004600620.Contig3</super_contig>
        <contig_pos>107379</contig_pos>
        <strand></strand>
        <context>agttcaacga[A/G]tgtgaggaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTGGTTCGACGTCGAAGACAAGAGAGAAAACGATGAAGAGTTCAACGA</left_flank>
        <right_flank>TGTGAGGAATTAGAAACTGTGCACCTAAATGTCAATAGAAAGAACATTGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTAAAATTTCGAATCGTTTGGTACTAAAATCAAGCTTGACCGTGAGGGGAGATATTATAGAATTTTAATCATTGGTTTTGAAAGCCTTGCGGCCGCGGCCCACCGTAACCTACAACATTGATTTTTATACGAAAATGATTCTCAAAATTTGAGCTACAGGAGTCTATAAAGTTTTTAGCTAGATTCCAATTTTGAAGTTAGTTACAGTGCAAAACATAAAGCATGTCTTTCGCTCAGTAGTTTGAGGCGGTATATGAAGTTTAGTCTCTGATTTCACACAGGAATTTGAAGACTTTTGTAGAAAGTTTTATATCCAAATGAACTGTATAACATCAGCTACAAGGACATATACTCATCTTTGTAAAATTCTAATTCTTAAGCAAGTTACAGTACCAAATGCTATACATACCTATTTTTGTGGTCCACTGCCAGAGACAGTGACACAATTGGTTCGACGTCGAAGACAAGAGAGAAAACGATGAAGAGTTCAACGAATGTGAGGAATTAGAAACTGTGCACCTAAATGTCAATAGAAAGAACATTGACTTATTACTAAGTCTTTATTAAATATAATTATAGAGAAAAGGTTAGCGAAAGATGACTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCACGCCTTTTATGTATGCAATCGGGCGTTCGATTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGAGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAGGTCATCTCAAAGATAAGAGAGAATTAATGTGACATGTTTGAGCAGGTGACTTGAACTTGGCGCCGGAGAAGCGTGTTGTTGGTGGAGTGTACGCACGAGACGCTTCAAACTGGTGA</canonical>
            <polymorphic>TTTTTTTAAAATTTCGAATCGTTTGGTACTAAAATCAAGCTTGACCGTGAGGGGAGATATTATAGAATTTTAATCATTGGTTTTGAAAGCCTTGCGGCCGCGGCCCACCGTAACCTACAACATTGATTTTTATACGAAAATGATTCTCAAAATTTGAGCTACAGGAGTCTATAAAGTTTTTAGCTAGATTCCAATTTTGAAGTTAGTTACAGTGCAAAACATAAAGCATGTCTTTCGCTCAGTAGTTTGAGGCGGTATATGAAGTTTAGTCTCTGATTTCACACAGGAATTTGAAGACTTTTGTAGAAAGTTTTATATCCAAATGAACTGTATAACATCAGCTACAAGGACATATACTCATCTTTGTAAAATTCTAATTCTTAAGCAAGTTACAGTACCAAATGCTATACATACCTATTTTTGTGGTCCACTGCCAGAGACAGTGACACAATTGGTTCGACGTCGAAGACAAGAGAGAAAACGATGAAGAGTTCAACGARTGTGAGGAATTAGAAACTGTGCACCTAAATGTCAATAGAAAGAACATTGACTTATTACTAAGTCTTTATTAAATATAATTATAGAGAAAAGGTTAGCGAAAGATGACTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCACGCCTTTTATGTATGCAATCGGGCGTTCGATTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGAGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAGGTCATCTCAAAGATAAGAGAGAATTAATGTGACATGTTTGAGCAGGTGACTTGAACTTGGCGCCGGAGAAGCGTGTTGTTGGTGGAGTGTACGCACGAGACGCTTCAAACTGGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTACCAAATGCTATACATACCT</pcr_primer_p1>
		<pcr_primer_p2>AAAACTACGAAAAATCTCCTGTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAGTACCAAATGCTATACATACCTATTTTTGTGGTCCACTGCCAGAGACAGTGACACAATTGGTTCGACGTCGAAGACAAGAGAGAAAACGATGAAGAGTTCAACGAATGTGAGGAATTAGAAACTGTGCACCTAAATGTCAATAGAAAGAACATTGACTTATTACTAAGTCTTTATTAAATATAATTATAGAGAAAAGGTTAGCGAAAGATGACTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>CAGTACCAAATGCTATACATACCTATTTTTGTGGTCCACTGCCAGAGACAGTGACACAATTGGTTCGACGTCGAAGACAAGAGAGAAAACGATGAAGAGTTCAACGARTGTGAGGAATTAGAAACTGTGCACCTAAATGTCAATAGAAAGAACATTGACTTATTACTAAGTCTTTATTAAATATAATTATAGAGAAAAGGTTAGCGAAAGATGACTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29463</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>4873</contig_pos>
        <strand></strand>
        <context>AAAataaatt[G/T]tttatcatga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGAAAGCCAAGAAAATTCCAACCCGATCATACCGTATCGAAAATAAATT</left_flank>
        <right_flank>TTTATCATGATAACACAAATGTTTTATCAGTTGACCACTTTTTCATATCT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTAGAAGCTAGCTATGGATTTCTAGCTTCAGATGTCAGACTACGGATTTCGAGCTATTTATTTCTAGCTACGGATTTCTGGTTACGAATTTCTGGGTACAGATTTTTAGCTATGGATTTCTAGCTATGAATTTCTAGCTATGTATTTCGAAATATGGATTTTTAGCTATGAGTTTTTAGCTATGAATTTCTAGCTATGGATATCTAGTTCTGGATTTTTAGCTATGGGTTTCTAGCTATGGATTTTTGTGTACGGTTTTCTAGTTATGGATTTATAGCTTCGTATTTCTAGCTACGGATTTCTGGCTATGGATTTCTGAGGTCCACCTTCCCTTAGGATGAATTGCGGATTTCGTCTTTCTTGGATGGGAAGTTCAAAATATTAATAAAGTTTCTAAAGACATTGAATACTGTAGTTTTTTTGGTTTACAAAGTTTCCTAATTTCAAAAGAAAGCCAAGAAAATTCCAACCCGATCATACCGTATCGAAAATAAATTGTTTATCATGATAACACAAATGTTTTATCAGTTGACCACTTTTTCATATCTTTCACAGAAATCGAGATGAATTGGCTCAAAGTTGACGGTTGGGTAGGCATTATTTTTGAGTGTTTATGATAACTCAAGTAAATGCTCATTTTGAAGCTCTCATTGAGCCAAATACAAAATACGGTCTTTGAACGTTTGTCTGTGTGTCCTGAAGACTTTTGTTCCTTCCCTTCACTATATTTCAGGGATCAACTTTATGACCTAAAAAACCTCCATCCTCCATTTCTTTCTAGAACAATTTTGCTGAAATTCCATTGTTCCTATTTTCTCCACACTTTCAGCTTCTTCTTCTTCTCCTCCTTTCCACAAAATAACCAACTCATTGTTTCTTTCTTCTTTTTTCTAACAAGTACTTTTTGTTTTCTCTGTTTTTCTCTCTGATAGTTTCAAGAAAAAGGAAACAAGATCTCCAAAAGTGTGTTGTTTTGTCTGTATGTGTTTCTCTTTTTT</canonical>
            <polymorphic>TTCTAGAAGCTAGCTATGGATTTCTAGCTTCAGATGTCAGACTACGGATTTCGAGCTATTTATTTCTAGCTACGGATTTCTGGTTACGAATTTCTGGGTACAGATTTTTAGCTATGGATTTCTAGCTATGAATTTCTAGCTATGTATTTCGAAATATGGATTTTTAGCTATGAGTTTTTAGCTATGAATTTCTAGCTATGGATATCTAGTTCTGGATTTTTAGCTATGGGTTTCTAGCTATGGATTTTTGTGTACGGTTTTCTAGTTATGGATTTATAGCTTCGTATTTCTAGCTACGGATTTCTGGCTATGGATTTCTGAGGTCCACCTTCCCTTAGGATGAATTGCGGATTTCGTCTTTCTTGGATGGGAAGTTCAAAATATTAATAAAGTTTCTAAAGACATTGAATACTGTAGTTTTTTTGGTTTACAAAGTTTCCTAATTTCAAAAGAAAGCCAAGAAAATTCCAACCCGATCATACCGTATCGAAAATAAATTKTTTATCATGATAACACAAATGTTTTATCAGTTGACCACTTTTTCATATCTTTCACAGAAATCGAGATGAATTGGCTCAAAGTTGACGGTTGGGTAGGCATTATTTTTGAGTGTTTATGATAACTCAAGTAAATGCTCATTTTGAAGCTCTCATTGAGCCAAATACAAAATACGGTCTTTGAACGTTTGTCTGTGTGTCCTGAAGACTTTTGTTCCTTCCCTTCACTATATTTCAGGGATCAACTTTATGACCTAAAAAACCTCCATCCTCCATTTCTTTCTAGAACAATTTTGCTGAAATTCCATTGTTCCTATTTTCTCCACACTTTCAGCTTCTTCTTCTTCTCCTCCTTTCCACAAAATAACCAACTCATTGTTTCTTTCTTCTTTTTTCTAACAAGTACTTTTTGTTTTCTCTGTTTTTCTCTCTGATAGTTTCAAGAAAAAGGAAACAAGATCTCCAAAAGTGTGTTGTTTTGTCTGTATGTGTTTCTCTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGGAAGTTCAAAATATTAATAAAG</pcr_primer_p1>
		<pcr_primer_p2>AAACACTCAAAAATAATGCCTAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGGGAAGTTCAAAATATTAATAAAGTTTCTAAAGACATTGAATACTGTAGTTTTTTTGGTTTACAAAGTTTCCTAATTTCAAAAGAAAGCCAAGAAAATTCCAACCCGATCATACCGTATCGAAAATAAATTGTTTATCATGATAACACAAATGTTTTATCAGTTGACCACTTTTTCATATCTTTCACAGAAATCGAGATGAATTGGCTCAAAGTTGACGGTTGGGTAGGCATTATTTTTGAGTGTTT</canonical_amplicon>
		<polymorphic_amplicon>TGGGAAGTTCAAAATATTAATAAAGTTTCTAAAGACATTGAATACTGTAGTTTTTTTGGTTTACAAAGTTTCCTAATTTCAAAAGAAAGCCAAGAAAATTCCAACCCGATCATACCGTATCGAAAATAAATTKTTTATCATGATAACACAAATGTTTTATCAGTTGACCACTTTTTCATATCTTTCACAGAAATCGAGATGAATTGGCTCAAAGTTGACGGTTGGGTAGGCATTATTTTTGAGTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29464</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>5770</contig_pos>
        <strand></strand>
        <context>ctttgagcac[A/T]attatctgaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCCGTAAACACTAAAAAGAAGGCCACCCAAACAGTCAACTTTGAGCAC</left_flank>
        <right_flank>ATTATCTGAATTCCTGTAACAGATATCAAAAAATTGTCAATTGGTAAAAT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTACTTTTTGTTTTCTCTGTTTTTCTCTCTGATAGTTTCAAGAAAAAGGAAACAAGATCTCCAAAAGTGTGTTGTTTTGTCTGTATGTGTTTCTCTTTTTTGTTCACATTGCAATTCGTGAATAATTAATGGAAAAGAGAAAGAGAATGGAGAGAAAAAGTGAAACTGGAACAAATCATAAATATTTAAGAACGATTTTGATCAAAATGAATATTTAAATGTTTGAGTTTTAGCTCAATTACCGTGAAACATGAATCAGAAGGGATGGCTTCTTAATCGTCAACTTTGAGCTTAATTATCTTGGTTCCTGTAATAGATATCAAAAAGTGATCAACTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGAAACATTTTTGATATCTTTAACAAAAACCGAGATATATGGGCTCAAAGTTGACAGTGTGGAGGCCCTAATTTCCGTAAACACTAAAAAGAAGGCCACCCAAACAGTCAACTTTGAGCACAATTATCTGAATTCCTGTAACAGATATCAAAAAATTGTCAATTGGTAAAATAATTTTGATAGTATGATAAACATTTTAACAGTTAAAAACTTTTTGGTATCTTTTACAGTAACCGAGATAAATGAGCTCAAAATTGACGGTGTGGAAAATTGACGGTTTTCAGTCTTTCAAATTTCTAGTTACCTGAAAATTCTAAATTTTGGGGGCTACTGCATTTTTCTTAAATTTCTATAAATTCGGAAAATTTTTGAAATTTTGAATTTCTGGATTCCTGAAAATCTTGGATTTTCAGAATTTTGGATTTTATCGGGAATTCCTGGAAATCGAGACTTTTAAACTTCCAAATTACAGGTTTTCCGGACTCTTGGTTTCTTAGACACGTTGAAAATTTGTAGGCTACAACTATTCTAACTAATTAATAGTGGGATAATTAAAATCCAAATTAAGGGACCGTATCCCTGCGGTGCTATCTTACCCTATTTCCACTGATAGAAGCCTAAC</canonical>
            <polymorphic>AAGTACTTTTTGTTTTCTCTGTTTTTCTCTCTGATAGTTTCAAGAAAAAGGAAACAAGATCTCCAAAAGTGTGTTGTTTTGTCTGTATGTGTTTCTCTTTTTTGTTCACATTGCAATTCGTGAATAATTAATGGAAAAGAGAAAGAGAATGGAGAGAAAAAGTGAAACTGGAACAAATCATAAATATTTAAGAACGATTTTGATCAAAATGAATATTTAAATGTTTGAGTTTTAGCTCAATTACCGTGAAACATGAATCAGAAGGGATGGCTTCTTAATCGTCAACTTTGAGCTTAATTATCTTGGTTCCTGTAATAGATATCAAAAAGTGATCAACTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGAAACATTTTTGATATCTTTAACAAAAACCGAGATATATGGGCTCAAAGTTGACAGTGTGGAGGCCCTAATTTCCGTAAACACTAAAAAGAAGGCCACCCAAACAGTCAACTTTGAGCACWATTATCTGAATTCCTGTAACAGATATCAAAAAATTGTCAATTGGTAAAATAATTTTGATAGTATGATAAACATTTTAACAGTTAAAAACTTTTTGGTATCTTTTACAGTAACCGAGATAAATGAGCTCAAAATTGACGGTGTGGAAAATTGACGGTTTTCAGTCTTTCAAATTTCTAGTTACCTGAAAATTCTAAATTTTGGGGGCTACTGCATTTTTCTTAAATTTCTATAAATTCGGAAAATTTTTGAAATTTTGAATTTCTGGATTCCTGAAAATCTTGGATTTTCAGAATTTTGGATTTTATCGGGAATTCCTGGAAATCGAGACTTTTAAACTTCCAAATTACAGGTTTTCCGGACTCTTGGTTTCTTAGACACGTTGAAAATTTGTAGGCTACAACTATTCTAACTAATTAATAGTGGGATAATTAAAATCCAAATTAAGGGACCGTATCCCTGCGGTGCTATCTTACCCTATTTCCACTGATAGAAGCCTAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>152 114 113 80 61 57 52 43 34 32 28 27 23 23 19 18 16 15 12 12 11 10 9 9 9 7 7 7</canonical_bands>
                <polymorphic_bands>152 114 113 80 61 61 57 43 34 32 28 27 23 23 19 18 16 15 12 12 11 10 9 9 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGAAACTGGAACAAATCATAAA</pcr_primer_p1>
		<pcr_primer_p2>AAGACTGAAAACCGTCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>505</pcr_amplicon_size>
		<canonical_amplicon>GTGAAACTGGAACAAATCATAAATATTTAAGAACGATTTTGATCAAAATGAATATTTAAATGTTTGAGTTTTAGCTCAATTACCGTGAAACATGAATCAGAAGGGATGGCTTCTTAATCGTCAACTTTGAGCTTAATTATCTTGGTTCCTGTAATAGATATCAAAAAGTGATCAACTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGAAACATTTTTGATATCTTTAACAAAAACCGAGATATATGGGCTCAAAGTTGACAGTGTGGAGGCCCTAATTTCCGTAAACACTAAAAAGAAGGCCACCCAAACAGTCAACTTTGAGCACAATTATCTGAATTCCTGTAACAGATATCAAAAAATTGTCAATTGGTAAAATAATTTTGATAGTATGATAAACATTTTAACAGTTAAAAACTTTTTGGTATCTTTTACAGTAACCGAGATAAATGAGCTCAAAATTGACGGTGTGGAAAATTGACGGTTTTCAGTCTT</canonical_amplicon>
		<polymorphic_amplicon>GTGAAACTGGAACAAATCATAAATATTTAAGAACGATTTTGATCAAAATGAATATTTAAATGTTTGAGTTTTAGCTCAATTACCGTGAAACATGAATCAGAAGGGATGGCTTCTTAATCGTCAACTTTGAGCTTAATTATCTTGGTTCCTGTAATAGATATCAAAAAGTGATCAACTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGAAACATTTTTGATATCTTTAACAAAAACCGAGATATATGGGCTCAAAGTTGACAGTGTGGAGGCCCTAATTTCCGTAAACACTAAAAAGAAGGCCACCCAAACAGTCAACTTTGAGCACWATTATCTGAATTCCTGTAACAGATATCAAAAAATTGTCAATTGGTAAAATAATTTTGATAGTATGATAAACATTTTAACAGTTAAAAACTTTTTGGTATCTTTTACAGTAACCGAGATAAATGAGCTCAAAATTGACGGTGTGGAAAATTGACGGTTTTCAGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29465</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>5874</contig_pos>
        <strand></strand>
        <context>tggtatcttt[T/C]acagtaaccg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTGATAGTATGATAAACATTTTAACAGTTAAAAACTTTTTGGTATCTTT</left_flank>
        <right_flank>ACAGTAACCGAGATAAATGAGCTCAAAATTGACGGTGTGGAAAATTGACG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCACATTGCAATTCGTGAATAATTAATGGAAAAGAGAAAGAGAATGGAGAGAAAAAGTGAAACTGGAACAAATCATAAATATTTAAGAACGATTTTGATCAAAATGAATATTTAAATGTTTGAGTTTTAGCTCAATTACCGTGAAACATGAATCAGAAGGGATGGCTTCTTAATCGTCAACTTTGAGCTTAATTATCTTGGTTCCTGTAATAGATATCAAAAAGTGATCAACTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGAAACATTTTTGATATCTTTAACAAAAACCGAGATATATGGGCTCAAAGTTGACAGTGTGGAGGCCCTAATTTCCGTAAACACTAAAAAGAAGGCCACCCAAACAGTCAACTTTGAGCACAATTATCTGAATTCCTGTAACAGATATCAAAAAATTGTCAATTGGTAAAATAATTTTGATAGTATGATAAACATTTTAACAGTTAAAAACTTTTTGGTATCTTTTACAGTAACCGAGATAAATGAGCTCAAAATTGACGGTGTGGAAAATTGACGGTTTTCAGTCTTTCAAATTTCTAGTTACCTGAAAATTCTAAATTTTGGGGGCTACTGCATTTTTCTTAAATTTCTATAAATTCGGAAAATTTTTGAAATTTTGAATTTCTGGATTCCTGAAAATCTTGGATTTTCAGAATTTTGGATTTTATCGGGAATTCCTGGAAATCGAGACTTTTAAACTTCCAAATTACAGGTTTTCCGGACTCTTGGTTTCTTAGACACGTTGAAAATTTGTAGGCTACAACTATTCTAACTAATTAATAGTGGGATAATTAAAATCCAAATTAAGGGACCGTATCCCTGCGGTGCTATCTTACCCTATTTCCACTGATAGAAGCCTAACCAAACCGTTAACTTTGAGCTCAATTATCTGGGTCCCTGATAAAGATATGAAAAATCTGTCGACTGGTAAATATTGCTAATATTATGATAAACATTATGTCTGTT</canonical>
            <polymorphic>TTCACATTGCAATTCGTGAATAATTAATGGAAAAGAGAAAGAGAATGGAGAGAAAAAGTGAAACTGGAACAAATCATAAATATTTAAGAACGATTTTGATCAAAATGAATATTTAAATGTTTGAGTTTTAGCTCAATTACCGTGAAACATGAATCAGAAGGGATGGCTTCTTAATCGTCAACTTTGAGCTTAATTATCTTGGTTCCTGTAATAGATATCAAAAAGTGATCAACTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGAAACATTTTTGATATCTTTAACAAAAACCGAGATATATGGGCTCAAAGTTGACAGTGTGGAGGCCCTAATTTCCGTAAACACTAAAAAGAAGGCCACCCAAACAGTCAACTTTGAGCACAATTATCTGAATTCCTGTAACAGATATCAAAAAATTGTCAATTGGTAAAATAATTTTGATAGTATGATAAACATTTTAACAGTTAAAAACTTTTTGGTATCTTTYACAGTAACCGAGATAAATGAGCTCAAAATTGACGGTGTGGAAAATTGACGGTTTTCAGTCTTTCAAATTTCTAGTTACCTGAAAATTCTAAATTTTGGGGGCTACTGCATTTTTCTTAAATTTCTATAAATTCGGAAAATTTTTGAAATTTTGAATTTCTGGATTCCTGAAAATCTTGGATTTTCAGAATTTTGGATTTTATCGGGAATTCCTGGAAATCGAGACTTTTAAACTTCCAAATTACAGGTTTTCCGGACTCTTGGTTTCTTAGACACGTTGAAAATTTGTAGGCTACAACTATTCTAACTAATTAATAGTGGGATAATTAAAATCCAAATTAAGGGACCGTATCCCTGCGGTGCTATCTTACCCTATTTCCACTGATAGAAGCCTAACCAAACCGTTAACTTTGAGCTCAATTATCTGGGTCCCTGATAAAGATATGAAAAATCTGTCGACTGGTAAATATTGCTAATATTATGATAAACATTATGTCTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGAAACTGGAACAAATCATAAA</pcr_primer_p1>
		<pcr_primer_p2>AAGACTGAAAACCGTCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>505</pcr_amplicon_size>
		<canonical_amplicon>GTGAAACTGGAACAAATCATAAATATTTAAGAACGATTTTGATCAAAATGAATATTTAAATGTTTGAGTTTTAGCTCAATTACCGTGAAACATGAATCAGAAGGGATGGCTTCTTAATCGTCAACTTTGAGCTTAATTATCTTGGTTCCTGTAATAGATATCAAAAAGTGATCAACTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGAAACATTTTTGATATCTTTAACAAAAACCGAGATATATGGGCTCAAAGTTGACAGTGTGGAGGCCCTAATTTCCGTAAACACTAAAAAGAAGGCCACCCAAACAGTCAACTTTGAGCACAATTATCTGAATTCCTGTAACAGATATCAAAAAATTGTCAATTGGTAAAATAATTTTGATAGTATGATAAACATTTTAACAGTTAAAAACTTTTTGGTATCTTTTACAGTAACCGAGATAAATGAGCTCAAAATTGACGGTGTGGAAAATTGACGGTTTTCAGTCTT</canonical_amplicon>
		<polymorphic_amplicon>GTGAAACTGGAACAAATCATAAATATTTAAGAACGATTTTGATCAAAATGAATATTTAAATGTTTGAGTTTTAGCTCAATTACCGTGAAACATGAATCAGAAGGGATGGCTTCTTAATCGTCAACTTTGAGCTTAATTATCTTGGTTCCTGTAATAGATATCAAAAAGTGATCAACTAATAAAATATTGGTGATATTATGATAAACATTTTATCAGTTGAAACATTTTTGATATCTTTAACAAAAACCGAGATATATGGGCTCAAAGTTGACAGTGTGGAGGCCCTAATTTCCGTAAACACTAAAAAGAAGGCCACCCAAACAGTCAACTTTGAGCACAATTATCTGAATTCCTGTAACAGATATCAAAAAATTGTCAATTGGTAAAATAATTTTGATAGTATGATAAACATTTTAACAGTTAAAAACTTTTTGGTATCTTTYACAGTAACCGAGATAAATGAGCTCAAAATTGACGGTGTGGAAAATTGACGGTTTTCAGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29466</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>8967</contig_pos>
        <strand>+</strand>
        <context>AACTTCAAGG[C/G]TTCTAGATCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGACTGAAAGCTAAAGTGATCCAAGATCCCGAAAACCCTAAACTTCAAGG</left_flank>
        <right_flank>TTCTAGATCCACTCAACTTTCCCAAAACTTCAAAATCTCAACTCTCCATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGTGCCAATGGGGTTTTGGATTTCATGGAAAAAACTGGGAGGAGGATGTGGAGTAGTACCACTAGAAAGAGGAGAAAAAAAAACGAAGCATAAGGTTAAGGGCTAGTTTTGAAAATAAGGAAATCAGAGAGACCAAAAAAGAAATGTTCTAGGGTTCTAGGGTTCTAGGGTTCTAGGGTTTTAGGTTCCAGGGTTTTAGGGTTCCAAGGTTCCAAAGTTCCAGGGTTCCAGGGTTTCAGGGTTCCAGGGTTCCAAGGTTCCCAAGACCCTGAACTTTCAATATTTGAAAAGTCCGAGATTCCAAAGTTTAAAAATTCTCAGATCCTAGTTACTAGGGTCCATTTATCTCGAAACTTCAAAACTTTGATCTACCTGAATTTAAAGACTGAGCTGTCCGAATCCAAGGTCTCGAAGTTTTCAGGATCACATCCCTAATTCCGACCCTACTTGACTGAAAGCTAAAGTGATCCAAGATCCCGAAAACCCTAAACTTCAAGGCTTCTAGATCCACTCAACTTTCCCAAAACTTCAAAATCTCAACTCTCCATCATCATCCATCATCATCTTTTTGACCTTTTTTCTGTTGTGGTCACTCTCTCTTCCACAAAAGTGAAAGCCAATTAAACTTGGTCCCCATTCTCCTTCCTCTTTTTCTCTTCTTTTTCTTCTTTCCGCGTCTCGTCCGCCTCTCGGCCGTCTCTCGCCCGTCGCCGCTCCACCGGCGGGAAGAGCCATGCGGAAAGGGTGGCTCCAGGTGGTGACCCAGCACCGTTTGTGTATCTCTCTCTTTTCCTGCAAACACACACACACACACAGACACATCGACGGAAAAAAAACGGAGTGAAAAAATATTAAAAAGTAAATGTGACTCATATTGTGGGTTTTTTTTGTAAAATATATAAAAATGTATCTACATATAAAGGACATAAAATGTACGAAAATGGGAAGATTGGGGTGGGACCTGTGGTCAGTCTTAATTTTAGGCCTTCAGTTCCAAGT</canonical>
            <polymorphic>AGGTGCCAATGGGGTTTTGGATTTCATGGAAAAAACTGGGAGGAGGATGTGGAGTAGTACCACTAGAAAGAGGAGAAAAAAAAACGAAGCATAAGGTTAAGGGCTAGTTTTGAAAATAAGGAAATCAGAGAGACCAAAAAAGAAATGTTCTAGGGTTCTAGGGTTCTAGGGTTCTAGGGTTTTAGGTTCCAGGGTTTTAGGGTTCCAAGGTTCCAAAGTTCCAGGGTTCCAGGGTTTCAGGGTTCCAGGGTTCCAAGGTTCCCAAGACCCTGAACTTTCAATATTTGAAAAGTCCGAGATTCCAAAGTTTAAAAATTCTCAGATCCTAGTTACTAGGGTCCATTTATCTCGAAACTTCAAAACTTTGATCTACCTGAATTTAAAGACTGAGCTGTCCGAATCCAAGGTCTCGAAGTTTTCAGGATCACATCCCTAATTCCGACCCTACTTGACTGAAAGCTAAAGTGATCCAAGATCCCGAAAACCCTAAACTTCAAGGSTTCTAGATCCACTCAACTTTCCCAAAACTTCAAAATCTCAACTCTCCATCATCATCCATCATCATCTTTTTGACCTTTTTTCTGTTGTGGTCACTCTCTCTTCCACAAAAGTGAAAGCCAATTAAACTTGGTCCCCATTCTCCTTCCTCTTTTTCTCTTCTTTTTCTTCTTTCCGCGTCTCGTCCGCCTCTCGGCCGTCTCTCGCCCGTCGCCGCTCCACCGGCGGGAAGAGCCATGCGGAAAGGGTGGCTCCAGGTGGTGACCCAGCACCGTTTGTGTATCTCTCTCTTTTCCTGCAAACACACACACACACACAGACACATCGACGGAAAAAAAACGGAGTGAAAAAATATTAAAAAGTAAATGTGACTCATATTGTGGGTTTTTTTTGTAAAATATATAAAAATGTATCTACATATAAAGGACATAAAATGTACGAAAATGGGAAGATTGGGGTGGGACCTGTGGTCAGTCTTAATTTTAGGCCTTCAGTTCCAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>288 236 118 103 77 68 40 38 17 15</canonical_bands>
                <polymorphic_bands>288 236 158 103 77 68 38 17 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTCAAAACTTTGATCTACCTG</pcr_primer_p1>
		<pcr_primer_p2>GAAGAGAGAGTGACCACAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTCAAAACTTTGATCTACCTGAATTTAAAGACTGAGCTGTCCGAATCCAAGGTCTCGAAGTTTTCAGGATCACATCCCTAATTCCGACCCTACTTGACTGAAAGCTAAAGTGATCCAAGATCCCGAAAACCCTAAACTTCAAGGCTTCTAGATCCACTCAACTTTCCCAAAACTTCAAAATCTCAACTCTCCATCATCATCCATCATCATCTTTTTGACCTTTTTTCTGTTGTGGTCACTCTCTCTTC</canonical_amplicon>
		<polymorphic_amplicon>ACTTCAAAACTTTGATCTACCTGAATTTAAAGACTGAGCTGTCCGAATCCAAGGTCTCGAAGTTTTCAGGATCACATCCCTAATTCCGACCCTACTTGACTGAAAGCTAAAGTGATCCAAGATCCCGAAAACCCTAAACTTCAAGGSTTCTAGATCCACTCAACTTTCCCAAAACTTCAAAATCTCAACTCTCCATCATCATCCATCATCATCTTTTTGACCTTTTTTCTGTTGTGGTCACTCTCTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29467</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>92094</contig_pos>
        <strand></strand>
        <context>aattagtaaa[A/C]trataaaatg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAA</left_flank>
        <right_flank>TAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAATTTTCTTTTTCTGAAATTTGACCTATTTTTTGTTGGGCAATTTTTTTTTCAAAACTTTTTTTTCAAATTTTTGATCTACCAGGGCGCCAAGGATTCGCTATTGATTTTGCTTCCTTTTTCTTCTTTTTTTTCTCTTTTTTTTAAACTTTTTTTTGTAATTTTCAAAAGATGAAATAGTAAAAAGAAAAAGTTGAAAATCACAAAAAAAGATTATAAAAATTGACTTTCATGTTTTGCAATCTCTTCCATCTTTTTTCGAATTTTTCAAATTGCTTCTCTAACTTTTTCAAAAAATTTTAGATCACAATCTTGACTCAACCGTCCGTCTTATTAGGAATTTCAAAATCTCCAAAACCTTTAAAATCTCCAACGATGTCTCCGAAGATCACTTGGAGTGAGTTTTTCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTACCCGACGGAACTTCGTATGCTGACAAGGAAGAAGATGCCCAAATAATATTAAAAGGTGGGGAGTTGATTCTGAAATAGAGTGTAAAAATGGGTCCATTAGCCTATTCTAGTTCGAAATATACCATAAAATCTGTAACAGACTTTCACAACTTTTTTA</canonical>
            <polymorphic>TTGAATTTTCTTTTTCTGAAATTTGACCTATTTTTTGTTGGGCAATTTTTTTTTCAAAACTTTTTTTTCAAATTTTTGATCTACCAGGGCGCCAAGGATTCGCTATTGATTTTGCTTCCTTTTTCTTCTTTTTTTTCTCTTTTTTTTAAACTTTTTTTTGTAATTTTCAAAAGATGAAATAGTAAAAAGAAAAAGTTGAAAATCACAAAAAAAGATTATAAAAATTGACTTTCATGTTTTGCAATCTCTTCCATCTTTTTTCGAATTTTTCAAATTGCTTCTCTAACTTTTTCAAAAAATTTTAGATCACAATCTTGACTCAACCGTCCGTCTTATTAGGAATTTCAAAATCTCCAAAACCTTTAAAATCTCCAACGATGTCTCCGAAGATCACTTGGAGTGAGTTTTTCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAMTAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTACCCGACGGAACTTCGTATGCTGACAAGGAAGAAGATGCCCAAATAATATTAAAAGGTGGGGAGTTGATTCTGAAATAGAGTGTAAAAATGGGTCCATTAGCCTATTCTAGTTCGAAATATACCATAAAATCTGTAACAGACTTTCACAACTTTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGAAATAAGTATTTGCACTGA</pcr_primer_p1>
		<pcr_primer_p2>TACTTTAAGTCTTCCGAGCAGT</pcr_primer_p2>
		<pcr_amplicon_size>435</pcr_amplicon_size>
		<canonical_amplicon>TCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTA</canonical_amplicon>
		<polymorphic_amplicon>TCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAMTAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29468</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>92096</contig_pos>
        <strand></strand>
        <context>ttagtaaamt[A/G]ataaaatgtt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAAT</left_flank>
        <right_flank>ATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTTTCTTTTTCTGAAATTTGACCTATTTTTTGTTGGGCAATTTTTTTTTCAAAACTTTTTTTTCAAATTTTTGATCTACCAGGGCGCCAAGGATTCGCTATTGATTTTGCTTCCTTTTTCTTCTTTTTTTTCTCTTTTTTTTAAACTTTTTTTTGTAATTTTCAAAAGATGAAATAGTAAAAAGAAAAAGTTGAAAATCACAAAAAAAGATTATAAAAATTGACTTTCATGTTTTGCAATCTCTTCCATCTTTTTTCGAATTTTTCAAATTGCTTCTCTAACTTTTTCAAAAAATTTTAGATCACAATCTTGACTCAACCGTCCGTCTTATTAGGAATTTCAAAATCTCCAAAACCTTTAAAATCTCCAACGATGTCTCCGAAGATCACTTGGAGTGAGTTTTTCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTACCCGACGGAACTTCGTATGCTGACAAGGAAGAAGATGCCCAAATAATATTAAAAGGTGGGGAGTTGATTCTGAAATAGAGTGTAAAAATGGGTCCATTAGCCTATTCTAGTTCGAAATATACCATAAAATCTGTAACAGACTTTCACAACTTTTTTATA</canonical>
            <polymorphic>GAATTTTCTTTTTCTGAAATTTGACCTATTTTTTGTTGGGCAATTTTTTTTTCAAAACTTTTTTTTCAAATTTTTGATCTACCAGGGCGCCAAGGATTCGCTATTGATTTTGCTTCCTTTTTCTTCTTTTTTTTCTCTTTTTTTTAAACTTTTTTTTGTAATTTTCAAAAGATGAAATAGTAAAAAGAAAAAGTTGAAAATCACAAAAAAAGATTATAAAAATTGACTTTCATGTTTTGCAATCTCTTCCATCTTTTTTCGAATTTTTCAAATTGCTTCTCTAACTTTTTCAAAAAATTTTAGATCACAATCTTGACTCAACCGTCCGTCTTATTAGGAATTTCAAAATCTCCAAAACCTTTAAAATCTCCAACGATGTCTCCGAAGATCACTTGGAGTGAGTTTTTCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATRATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTACCCGACGGAACTTCGTATGCTGACAAGGAAGAAGATGCCCAAATAATATTAAAAGGTGGGGAGTTGATTCTGAAATAGAGTGTAAAAATGGGTCCATTAGCCTATTCTAGTTCGAAATATACCATAAAATCTGTAACAGACTTTCACAACTTTTTTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGAAATAAGTATTTGCACTGA</pcr_primer_p1>
		<pcr_primer_p2>TACTTTAAGTCTTCCGAGCAGT</pcr_primer_p2>
		<pcr_amplicon_size>435</pcr_amplicon_size>
		<canonical_amplicon>TCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTA</canonical_amplicon>
		<polymorphic_amplicon>TCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATRATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29469</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>92118</contig_pos>
        <strand></strand>
        <context>gtgatattgt[A/G]ataaatattt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGT</left_flank>
        <right_flank>ATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACCTATTTTTTGTTGGGCAATTTTTTTTTCAAAACTTTTTTTTCAAATTTTTGATCTACCAGGGCGCCAAGGATTCGCTATTGATTTTGCTTCCTTTTTCTTCTTTTTTTTCTCTTTTTTTTAAACTTTTTTTTGTAATTTTCAAAAGATGAAATAGTAAAAAGAAAAAGTTGAAAATCACAAAAAAAGATTATAAAAATTGACTTTCATGTTTTGCAATCTCTTCCATCTTTTTTCGAATTTTTCAAATTGCTTCTCTAACTTTTTCAAAAAATTTTAGATCACAATCTTGACTCAACCGTCCGTCTTATTAGGAATTTCAAAATCTCCAAAACCTTTAAAATCTCCAACGATGTCTCCGAAGATCACTTGGAGTGAGTTTTTCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTACCCGACGGAACTTCGTATGCTGACAAGGAAGAAGATGCCCAAATAATATTAAAAGGTGGGGAGTTGATTCTGAAATAGAGTGTAAAAATGGGTCCATTAGCCTATTCTAGTTCGAAATATACCATAAAATCTGTAACAGACTTTCACAACTTTTTTATATCTTTCACGGGAATTAAGAAAT</canonical>
            <polymorphic>GACCTATTTTTTGTTGGGCAATTTTTTTTTCAAAACTTTTTTTTCAAATTTTTGATCTACCAGGGCGCCAAGGATTCGCTATTGATTTTGCTTCCTTTTTCTTCTTTTTTTTCTCTTTTTTTTAAACTTTTTTTTGTAATTTTCAAAAGATGAAATAGTAAAAAGAAAAAGTTGAAAATCACAAAAAAAGATTATAAAAATTGACTTTCATGTTTTGCAATCTCTTCCATCTTTTTTCGAATTTTTCAAATTGCTTCTCTAACTTTTTCAAAAAATTTTAGATCACAATCTTGACTCAACCGTCCGTCTTATTAGGAATTTCAAAATCTCCAAAACCTTTAAAATCTCCAACGATGTCTCCGAAGATCACTTGGAGTGAGTTTTTCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTRATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTACCCGACGGAACTTCGTATGCTGACAAGGAAGAAGATGCCCAAATAATATTAAAAGGTGGGGAGTTGATTCTGAAATAGAGTGTAAAAATGGGTCCATTAGCCTATTCTAGTTCGAAATATACCATAAAATCTGTAACAGACTTTCACAACTTTTTTATATCTTTCACGGGAATTAAGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGAAATAAGTATTTGCACTGA</pcr_primer_p1>
		<pcr_primer_p2>TACTTTAAGTCTTCCGAGCAGT</pcr_primer_p2>
		<pcr_amplicon_size>435</pcr_amplicon_size>
		<canonical_amplicon>TCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTA</canonical_amplicon>
		<polymorphic_amplicon>TCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTRATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29470</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>92134</contig_pos>
        <strand></strand>
        <context>tattttatta[A/G]ttgaccactt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTA</left_flank>
        <right_flank>TTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCAATTTTTTTTTCAAAACTTTTTTTTCAAATTTTTGATCTACCAGGGCGCCAAGGATTCGCTATTGATTTTGCTTCCTTTTTCTTCTTTTTTTTCTCTTTTTTTTAAACTTTTTTTTGTAATTTTCAAAAGATGAAATAGTAAAAAGAAAAAGTTGAAAATCACAAAAAAAGATTATAAAAATTGACTTTCATGTTTTGCAATCTCTTCCATCTTTTTTCGAATTTTTCAAATTGCTTCTCTAACTTTTTCAAAAAATTTTAGATCACAATCTTGACTCAACCGTCCGTCTTATTAGGAATTTCAAAATCTCCAAAACCTTTAAAATCTCCAACGATGTCTCCGAAGATCACTTGGAGTGAGTTTTTCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTACCCGACGGAACTTCGTATGCTGACAAGGAAGAAGATGCCCAAATAATATTAAAAGGTGGGGAGTTGATTCTGAAATAGAGTGTAAAAATGGGTCCATTAGCCTATTCTAGTTCGAAATATACCATAAAATCTGTAACAGACTTTCACAACTTTTTTATATCTTTCACGGGAATTAAGAAATATTGGGAAGTTTAAAG</canonical>
            <polymorphic>GGCAATTTTTTTTTCAAAACTTTTTTTTCAAATTTTTGATCTACCAGGGCGCCAAGGATTCGCTATTGATTTTGCTTCCTTTTTCTTCTTTTTTTTCTCTTTTTTTTAAACTTTTTTTTGTAATTTTCAAAAGATGAAATAGTAAAAAGAAAAAGTTGAAAATCACAAAAAAAGATTATAAAAATTGACTTTCATGTTTTGCAATCTCTTCCATCTTTTTTCGAATTTTTCAAATTGCTTCTCTAACTTTTTCAAAAAATTTTAGATCACAATCTTGACTCAACCGTCCGTCTTATTAGGAATTTCAAAATCTCCAAAACCTTTAAAATCTCCAACGATGTCTCCGAAGATCACTTGGAGTGAGTTTTTCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTARTTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTACCCGACGGAACTTCGTATGCTGACAAGGAAGAAGATGCCCAAATAATATTAAAAGGTGGGGAGTTGATTCTGAAATAGAGTGTAAAAATGGGTCCATTAGCCTATTCTAGTTCGAAATATACCATAAAATCTGTAACAGACTTTCACAACTTTTTTATATCTTTCACGGGAATTAAGAAATATTGGGAAGTTTAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>217 174 155 124 119 106 56 25 19 5</canonical_bands>
                <polymorphic_bands>217 199 155 124 119 106 56 19 5</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>435 118 91 61 49 43 41 40 31 27 27 25 9 3</canonical_bands>
                <polymorphic_bands>435 118 91 89 61 43 41 31 27 27 25 9 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGAAATAAGTATTTGCACTGA</pcr_primer_p1>
		<pcr_primer_p2>TACTTTAAGTCTTCCGAGCAGT</pcr_primer_p2>
		<pcr_amplicon_size>435</pcr_amplicon_size>
		<canonical_amplicon>TCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTA</canonical_amplicon>
		<polymorphic_amplicon>TCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTARTTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29471</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>92294</contig_pos>
        <strand></strand>
        <context>atctaaaagt[A/G]gtgaactgay</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGT</left_flank>
        <right_flank>GTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCACAAAAAAAGATTATAAAAATTGACTTTCATGTTTTGCAATCTCTTCCATCTTTTTTCGAATTTTTCAAATTGCTTCTCTAACTTTTTCAAAAAATTTTAGATCACAATCTTGACTCAACCGTCCGTCTTATTAGGAATTTCAAAATCTCCAAAACCTTTAAAATCTCCAACGATGTCTCCGAAGATCACTTGGAGTGAGTTTTTCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTACCCGACGGAACTTCGTATGCTGACAAGGAAGAAGATGCCCAAATAATATTAAAAGGTGGGGAGTTGATTCTGAAATAGAGTGTAAAAATGGGTCCATTAGCCTATTCTAGTTCGAAATATACCATAAAATCTGTAACAGACTTTCACAACTTTTTTATATCTTTCACGGGAATTAAGAAATATTGGGAAGTTTAAAGTTGGGTTCCTTCTATTATAGATTTGCGGTAGGCAATTTTCTAGGCTCTAATTTTGATAAAAATGTTCTTGTTCTAATTTTGATAAAAATGGCAAAAAAATGGGAAAATATAGCAATAAAATTTTCCAATCCAATTTAGGTTTCAAAAAATTTTCAGACGT</canonical>
            <polymorphic>AATCACAAAAAAAGATTATAAAAATTGACTTTCATGTTTTGCAATCTCTTCCATCTTTTTTCGAATTTTTCAAATTGCTTCTCTAACTTTTTCAAAAAATTTTAGATCACAATCTTGACTCAACCGTCCGTCTTATTAGGAATTTCAAAATCTCCAAAACCTTTAAAATCTCCAACGATGTCTCCGAAGATCACTTGGAGTGAGTTTTTCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTRGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTACCCGACGGAACTTCGTATGCTGACAAGGAAGAAGATGCCCAAATAATATTAAAAGGTGGGGAGTTGATTCTGAAATAGAGTGTAAAAATGGGTCCATTAGCCTATTCTAGTTCGAAATATACCATAAAATCTGTAACAGACTTTCACAACTTTTTTATATCTTTCACGGGAATTAAGAAATATTGGGAAGTTTAAAGTTGGGTTCCTTCTATTATAGATTTGCGGTAGGCAATTTTCTAGGCTCTAATTTTGATAAAAATGTTCTTGTTCTAATTTTGATAAAAATGGCAAAAAAATGGGAAAATATAGCAATAAAATTTTCCAATCCAATTTAGGTTTCAAAAAATTTTCAGACGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGAAATAAGTATTTGCACTGA</pcr_primer_p1>
		<pcr_primer_p2>TACTTTAAGTCTTCCGAGCAGT</pcr_primer_p2>
		<pcr_amplicon_size>435</pcr_amplicon_size>
		<canonical_amplicon>TCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTA</canonical_amplicon>
		<polymorphic_amplicon>TCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTRGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29472</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>92304</contig_pos>
        <strand></strand>
        <context>rgtgaactga[T/C]aaaatgttgg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGA</left_flank>
        <right_flank>AAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGATTATAAAAATTGACTTTCATGTTTTGCAATCTCTTCCATCTTTTTTCGAATTTTTCAAATTGCTTCTCTAACTTTTTCAAAAAATTTTAGATCACAATCTTGACTCAACCGTCCGTCTTATTAGGAATTTCAAAATCTCCAAAACCTTTAAAATCTCCAACGATGTCTCCGAAGATCACTTGGAGTGAGTTTTTCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTACCCGACGGAACTTCGTATGCTGACAAGGAAGAAGATGCCCAAATAATATTAAAAGGTGGGGAGTTGATTCTGAAATAGAGTGTAAAAATGGGTCCATTAGCCTATTCTAGTTCGAAATATACCATAAAATCTGTAACAGACTTTCACAACTTTTTTATATCTTTCACGGGAATTAAGAAATATTGGGAAGTTTAAAGTTGGGTTCCTTCTATTATAGATTTGCGGTAGGCAATTTTCTAGGCTCTAATTTTGATAAAAATGTTCTTGTTCTAATTTTGATAAAAATGGCAAAAAAATGGGAAAATATAGCAATAAAATTTTCCAATCCAATTTAGGTTTCAAAAAATTTTCAGACGTTTTCCTTACC</canonical>
            <polymorphic>AAAGATTATAAAAATTGACTTTCATGTTTTGCAATCTCTTCCATCTTTTTTCGAATTTTTCAAATTGCTTCTCTAACTTTTTCAAAAAATTTTAGATCACAATCTTGACTCAACCGTCCGTCTTATTAGGAATTTCAAAATCTCCAAAACCTTTAAAATCTCCAACGATGTCTCCGAAGATCACTTGGAGTGAGTTTTTCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGAYAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTACCCGACGGAACTTCGTATGCTGACAAGGAAGAAGATGCCCAAATAATATTAAAAGGTGGGGAGTTGATTCTGAAATAGAGTGTAAAAATGGGTCCATTAGCCTATTCTAGTTCGAAATATACCATAAAATCTGTAACAGACTTTCACAACTTTTTTATATCTTTCACGGGAATTAAGAAATATTGGGAAGTTTAAAGTTGGGTTCCTTCTATTATAGATTTGCGGTAGGCAATTTTCTAGGCTCTAATTTTGATAAAAATGTTCTTGTTCTAATTTTGATAAAAATGGCAAAAAAATGGGAAAATATAGCAATAAAATTTTCCAATCCAATTTAGGTTTCAAAAAATTTTCAGACGTTTTCCTTACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGAAATAAGTATTTGCACTGA</pcr_primer_p1>
		<pcr_primer_p2>TACTTTAAGTCTTCCGAGCAGT</pcr_primer_p2>
		<pcr_amplicon_size>435</pcr_amplicon_size>
		<canonical_amplicon>TCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTA</canonical_amplicon>
		<polymorphic_amplicon>TCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGAYAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29473</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>92331</contig_pos>
        <strand></strand>
        <context>tgtgacaaat[G/A]tattattagt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAAT</left_flank>
        <right_flank>TATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGCAATCTCTTCCATCTTTTTTCGAATTTTTCAAATTGCTTCTCTAACTTTTTCAAAAAATTTTAGATCACAATCTTGACTCAACCGTCCGTCTTATTAGGAATTTCAAAATCTCCAAAACCTTTAAAATCTCCAACGATGTCTCCGAAGATCACTTGGAGTGAGTTTTTCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTACCCGACGGAACTTCGTATGCTGACAAGGAAGAAGATGCCCAAATAATATTAAAAGGTGGGGAGTTGATTCTGAAATAGAGTGTAAAAATGGGTCCATTAGCCTATTCTAGTTCGAAATATACCATAAAATCTGTAACAGACTTTCACAACTTTTTTATATCTTTCACGGGAATTAAGAAATATTGGGAAGTTTAAAGTTGGGTTCCTTCTATTATAGATTTGCGGTAGGCAATTTTCTAGGCTCTAATTTTGATAAAAATGTTCTTGTTCTAATTTTGATAAAAATGGCAAAAAAATGGGAAAATATAGCAATAAAATTTTCCAATCCAATTTAGGTTTCAAAAAATTTTCAGACGTTTTCCTTACCTCCGGCATTTGCTTCAGGAGACCTTTC</canonical>
            <polymorphic>TTTGCAATCTCTTCCATCTTTTTTCGAATTTTTCAAATTGCTTCTCTAACTTTTTCAAAAAATTTTAGATCACAATCTTGACTCAACCGTCCGTCTTATTAGGAATTTCAAAATCTCCAAAACCTTTAAAATCTCCAACGATGTCTCCGAAGATCACTTGGAGTGAGTTTTTCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATRTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTACCCGACGGAACTTCGTATGCTGACAAGGAAGAAGATGCCCAAATAATATTAAAAGGTGGGGAGTTGATTCTGAAATAGAGTGTAAAAATGGGTCCATTAGCCTATTCTAGTTCGAAATATACCATAAAATCTGTAACAGACTTTCACAACTTTTTTATATCTTTCACGGGAATTAAGAAATATTGGGAAGTTTAAAGTTGGGTTCCTTCTATTATAGATTTGCGGTAGGCAATTTTCTAGGCTCTAATTTTGATAAAAATGTTCTTGTTCTAATTTTGATAAAAATGGCAAAAAAATGGGAAAATATAGCAATAAAATTTTCCAATCCAATTTAGGTTTCAAAAAATTTTCAGACGTTTTCCTTACCTCCGGCATTTGCTTCAGGAGACCTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGAAATAAGTATTTGCACTGA</pcr_primer_p1>
		<pcr_primer_p2>TACTTTAAGTCTTCCGAGCAGT</pcr_primer_p2>
		<pcr_amplicon_size>435</pcr_amplicon_size>
		<canonical_amplicon>TCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTA</canonical_amplicon>
		<polymorphic_amplicon>TCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATRTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29474</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>92358</contig_pos>
        <strand></strand>
        <context>ctttttgata[T/A]ctttcacata</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATA</left_flank>
        <right_flank>CTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTCAAATTGCTTCTCTAACTTTTTCAAAAAATTTTAGATCACAATCTTGACTCAACCGTCCGTCTTATTAGGAATTTCAAAATCTCCAAAACCTTTAAAATCTCCAACGATGTCTCCGAAGATCACTTGGAGTGAGTTTTTCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTACCCGACGGAACTTCGTATGCTGACAAGGAAGAAGATGCCCAAATAATATTAAAAGGTGGGGAGTTGATTCTGAAATAGAGTGTAAAAATGGGTCCATTAGCCTATTCTAGTTCGAAATATACCATAAAATCTGTAACAGACTTTCACAACTTTTTTATATCTTTCACGGGAATTAAGAAATATTGGGAAGTTTAAAGTTGGGTTCCTTCTATTATAGATTTGCGGTAGGCAATTTTCTAGGCTCTAATTTTGATAAAAATGTTCTTGTTCTAATTTTGATAAAAATGGCAAAAAAATGGGAAAATATAGCAATAAAATTTTCCAATCCAATTTAGGTTTCAAAAAATTTTCAGACGTTTTCCTTACCTCCGGCATTTGCTTCAGGAGACCTTTCTCTCCTCTAAATTCCATTTGCGAGATT</canonical>
            <polymorphic>ATTTTTCAAATTGCTTCTCTAACTTTTTCAAAAAATTTTAGATCACAATCTTGACTCAACCGTCCGTCTTATTAGGAATTTCAAAATCTCCAAAACCTTTAAAATCTCCAACGATGTCTCCGAAGATCACTTGGAGTGAGTTTTTCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATAWCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTACCCGACGGAACTTCGTATGCTGACAAGGAAGAAGATGCCCAAATAATATTAAAAGGTGGGGAGTTGATTCTGAAATAGAGTGTAAAAATGGGTCCATTAGCCTATTCTAGTTCGAAATATACCATAAAATCTGTAACAGACTTTCACAACTTTTTTATATCTTTCACGGGAATTAAGAAATATTGGGAAGTTTAAAGTTGGGTTCCTTCTATTATAGATTTGCGGTAGGCAATTTTCTAGGCTCTAATTTTGATAAAAATGTTCTTGTTCTAATTTTGATAAAAATGGCAAAAAAATGGGAAAATATAGCAATAAAATTTTCCAATCCAATTTAGGTTTCAAAAAATTTTCAGACGTTTTCCTTACCTCCGGCATTTGCTTCAGGAGACCTTTCTCTCCTCTAAATTCCATTTGCGAGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>502 279 219</canonical_bands>
                <polymorphic_bands>781 219</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGAAATAAGTATTTGCACTGA</pcr_primer_p1>
		<pcr_primer_p2>TACTTTAAGTCTTCCGAGCAGT</pcr_primer_p2>
		<pcr_amplicon_size>435</pcr_amplicon_size>
		<canonical_amplicon>TCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTA</canonical_amplicon>
		<polymorphic_amplicon>TCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATAWCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29475</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>92383</contig_pos>
        <strand>+</strand>
        <context>gagataactt[G/T]GGKTTTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTT</left_flank>
        <right_flank>GGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAAAAAATTTTAGATCACAATCTTGACTCAACCGTCCGTCTTATTAGGAATTTCAAAATCTCCAAAACCTTTAAAATCTCCAACGATGTCTCCGAAGATCACTTGGAGTGAGTTTTTCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTACCCGACGGAACTTCGTATGCTGACAAGGAAGAAGATGCCCAAATAATATTAAAAGGTGGGGAGTTGATTCTGAAATAGAGTGTAAAAATGGGTCCATTAGCCTATTCTAGTTCGAAATATACCATAAAATCTGTAACAGACTTTCACAACTTTTTTATATCTTTCACGGGAATTAAGAAATATTGGGAAGTTTAAAGTTGGGTTCCTTCTATTATAGATTTGCGGTAGGCAATTTTCTAGGCTCTAATTTTGATAAAAATGTTCTTGTTCTAATTTTGATAAAAATGGCAAAAAAATGGGAAAATATAGCAATAAAATTTTCCAATCCAATTTAGGTTTCAAAAAATTTTCAGACGTTTTCCTTACCTCCGGCATTTGCTTCAGGAGACCTTTCTCTCCTCTAAATTCCATTTGCGAGATTCCCTTCCGAACTGCAACCATCACTG</canonical>
            <polymorphic>TTTCAAAAAATTTTAGATCACAATCTTGACTCAACCGTCCGTCTTATTAGGAATTTCAAAATCTCCAAAACCTTTAAAATCTCCAACGATGTCTCCGAAGATCACTTGGAGTGAGTTTTTCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTKGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTACCCGACGGAACTTCGTATGCTGACAAGGAAGAAGATGCCCAAATAATATTAAAAGGTGGGGAGTTGATTCTGAAATAGAGTGTAAAAATGGGTCCATTAGCCTATTCTAGTTCGAAATATACCATAAAATCTGTAACAGACTTTCACAACTTTTTTATATCTTTCACGGGAATTAAGAAATATTGGGAAGTTTAAAGTTGGGTTCCTTCTATTATAGATTTGCGGTAGGCAATTTTCTAGGCTCTAATTTTGATAAAAATGTTCTTGTTCTAATTTTGATAAAAATGGCAAAAAAATGGGAAAATATAGCAATAAAATTTTCCAATCCAATTTAGGTTTCAAAAAATTTTCAGACGTTTTCCTTACCTCCGGCATTTGCTTCAGGAGACCTTTCTCTCCTCTAAATTCCATTTGCGAGATTCCCTTCCGAACTGCAACCATCACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGAAATAAGTATTTGCACTGA</pcr_primer_p1>
		<pcr_primer_p2>TACTTTAAGTCTTCCGAGCAGT</pcr_primer_p2>
		<pcr_amplicon_size>435</pcr_amplicon_size>
		<canonical_amplicon>TCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTA</canonical_amplicon>
		<polymorphic_amplicon>TCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTKGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29476</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>92386</contig_pos>
        <strand>+</strand>
        <context>ataacttKGG[G/T]TTTTTTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGG</left_flank>
        <right_flank>TTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAAATTTTAGATCACAATCTTGACTCAACCGTCCGTCTTATTAGGAATTTCAAAATCTCCAAAACCTTTAAAATCTCCAACGATGTCTCCGAAGATCACTTGGAGTGAGTTTTTCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTACCCGACGGAACTTCGTATGCTGACAAGGAAGAAGATGCCCAAATAATATTAAAAGGTGGGGAGTTGATTCTGAAATAGAGTGTAAAAATGGGTCCATTAGCCTATTCTAGTTCGAAATATACCATAAAATCTGTAACAGACTTTCACAACTTTTTTATATCTTTCACGGGAATTAAGAAATATTGGGAAGTTTAAAGTTGGGTTCCTTCTATTATAGATTTGCGGTAGGCAATTTTCTAGGCTCTAATTTTGATAAAAATGTTCTTGTTCTAATTTTGATAAAAATGGCAAAAAAATGGGAAAATATAGCAATAAAATTTTCCAATCCAATTTAGGTTTCAAAAAATTTTCAGACGTTTTCCTTACCTCCGGCATTTGCTTCAGGAGACCTTTCTCTCCTCTAAATTCCATTTGCGAGATTCCCTTCCGAACTGCAACCATCACTGTCT</canonical>
            <polymorphic>CAAAAAATTTTAGATCACAATCTTGACTCAACCGTCCGTCTTATTAGGAATTTCAAAATCTCCAAAACCTTTAAAATCTCCAACGATGTCTCCGAAGATCACTTGGAGTGAGTTTTTCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGKTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTACCCGACGGAACTTCGTATGCTGACAAGGAAGAAGATGCCCAAATAATATTAAAAGGTGGGGAGTTGATTCTGAAATAGAGTGTAAAAATGGGTCCATTAGCCTATTCTAGTTCGAAATATACCATAAAATCTGTAACAGACTTTCACAACTTTTTTATATCTTTCACGGGAATTAAGAAATATTGGGAAGTTTAAAGTTGGGTTCCTTCTATTATAGATTTGCGGTAGGCAATTTTCTAGGCTCTAATTTTGATAAAAATGTTCTTGTTCTAATTTTGATAAAAATGGCAAAAAAATGGGAAAATATAGCAATAAAATTTTCCAATCCAATTTAGGTTTCAAAAAATTTTCAGACGTTTTCCTTACCTCCGGCATTTGCTTCAGGAGACCTTTCTCTCCTCTAAATTCCATTTGCGAGATTCCCTTCCGAACTGCAACCATCACTGTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGAAATAAGTATTTGCACTGA</pcr_primer_p1>
		<pcr_primer_p2>CGTCGGGTACTTTAAGTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>442</pcr_amplicon_size>
		<canonical_amplicon>TCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGTTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTACCCGACG</canonical_amplicon>
		<polymorphic_amplicon>TCTGAAATAAGTATTTGCACTGATCAAGCCAGACTGTAATCTTTGAGCTCAATTATCTCGGTTGCCATAAAAGATATCAAAAATTAGTAAAATAATAAAATGTTGGTGATATTGTAATAAATATTTTATTAATTGACCACTTTTTGATAACTTTTAAAAGAAGCAAGATAAATTGGCTCAAAGTTGGCAGTCGTGTGTGGTCGCAGCTCAAACCTCCGTGCCGAGGAGTTGCGGCTTGAGATAGCTGCTAACTTTGAGCTAGTTTATCTGGGTTAAGAGGTATCTAAAAGTAGTGAACTGATAAAATGTTGGTGATAATGTGACAAATGTATTATTAGTTGACGACTTTTTGATATCTTTCACATAAAATGAGATAACTTTGGKTTTTTTTTTCAGGGTGAAATGACCAAACGACTGCTCGGAAGACTTAAAGTACCCGACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29477</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>94251</contig_pos>
        <strand>+</strand>
        <context>AGCTTTGTTT[C/T]TGGACATTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCGATTTTTTCGAATAAATTAAAAGAAGAATTTTGTAAAGCTTTGTTT</left_flank>
        <right_flank>TGGACATTCCCAATGTTTAATGAACAACAAAGCAAAAATAAAAGCACAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACCTTTCCATCTGTTCCGTAAACGCCATCCACACATCCATGTGTCAAAAACACCAAAATCGCAGAATCACCATGGTCTGCCTCCGCTCCGAATCTCCTCACAGTGTCCTCAATCCCCTGAAAAACATTTTATAGGCAGAAGATGAAGAAGAGGACTCAAAATTTTGAGGAGTTTCTGAAGGCCACACAGTGTAAGCCGGGAAAGCATCTGAAGAAGTACTTCAAGATTGGAGATAGTGAAAAAGAGTGGAGAAGCCGGAGGCCAAAAAAAAACAAAAAATAAGCGAAAAAACTGCAGAAGAACGAAAAATTATGGCCGGAAATGCAGAAAACAAGCATTGACCAAGAAAAAACATTTTTCGAAAATGTTCCCGCTTGATTTTTGTGTTGCGACAGAGCGCGCGCTCACTTGGTTACGGTAGCAAAAAAATAATTTTTTCAGACGAAAATCGATTTTTTCGAATAAATTAAAAGAAGAATTTTGTAAAGCTTTGTTTCTGGACATTCCCAATGTTTAATGAACAACAAAGCAAAAATAAAAGCACAGTTTAACATTCAAGTTAGGTTGTTCCAAGAGATGAAAAATGTGGTTGTGAATTCGATGACCCGAAAATTTCAATTATCTATTTCATTTTCTCTAATTGAAGTCCATCCAAACCATCTAATTTGAGCTCAATTATCTAGGTTTCTGTAAGAGATATCCAAAATCCGTTAACTGATAAAATATGGGAGATATCAAAATGAACAATTTGTTAGTCAAATTTTTTTATATCTTTCAGAGGAAGCGAGATATTTGAGCTCAAAGTGCATGCAGAGGGTGGGCTTCTATTAGAGCAAGAACGGTATTTTAAAAAAACTCACTCCAAGTGATCATAGTGATTTCCAAACAACCGATGAAGACAGTCGGTGGGGCAAAGGAAAATCGCCATACAGACCGGGATCGCGCCTCTTGAACTCCTTTTGGGAATCCCATCTTTTCCACTTCACCTAAAGTTAGA</canonical>
            <polymorphic>AAAACCTTTCCATCTGTTCCGTAAACGCCATCCACACATCCATGTGTCAAAAACACCAAAATCGCAGAATCACCATGGTCTGCCTCCGCTCCGAATCTCCTCACAGTGTCCTCAATCCCCTGAAAAACATTTTATAGGCAGAAGATGAAGAAGAGGACTCAAAATTTTGAGGAGTTTCTGAAGGCCACACAGTGTAAGCCGGGAAAGCATCTGAAGAAGTACTTCAAGATTGGAGATAGTGAAAAAGAGTGGAGAAGCCGGAGGCCAAAAAAAAACAAAAAATAAGCGAAAAAACTGCAGAAGAACGAAAAATTATGGCCGGAAATGCAGAAAACAAGCATTGACCAAGAAAAAACATTTTTCGAAAATGTTCCCGCTTGATTTTTGTGTTGCGACAGAGCGCGCGCTCACTTGGTTACGGTAGCAAAAAAATAATTTTTTCAGACGAAAATCGATTTTTTCGAATAAATTAAAAGAAGAATTTTGTAAAGCTTTGTTTYTGGACATTCCCAATGTTTAATGAACAACAAAGCAAAAATAAAAGCACAGTTTAACATTCAAGTTAGGTTGTTCCAAGAGATGAAAAATGTGGTTGTGAATTCGATGACCCGAAAATTTCAATTATCTATTTCATTTTCTCTAATTGAAGTCCATCCAAACCATCTAATTTGAGCTCAATTATCTAGGTTTCTGTAAGAGATATCCAAAATCCGTTAACTGATAAAATATGGGAGATATCAAAATGAACAATTTGTTAGTCAAATTTTTTTATATCTTTCAGAGGAAGCGAGATATTTGAGCTCAAAGTGCATGCAGAGGGTGGGCTTCTATTAGAGCAAGAACGGTATTTTAAAAAAACTCACTCCAAGTGATCATAGTGATTTCCAAACAACCGATGAAGACAGTCGGTGGGGCAAAGGAAAATCGCCATACAGACCGGGATCGCGCCTCTTGAACTCCTTTTGGGAATCCCATCTTTTCCACTTCACCTAAAGTTAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>451 275 225 49</canonical_bands>
                <polymorphic_bands>726 225 49</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACAAGCATTGACCAAGA</pcr_primer_p1>
		<pcr_primer_p2>CTTGAATGTTAAACTGTGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>AAAACAAGCATTGACCAAGAAAAAACATTTTTCGAAAATGTTCCCGCTTGATTTTTGTGTTGCGACAGAGCGCGCGCTCACTTGGTTACGGTAGCAAAAAAATAATTTTTTCAGACGAAAATCGATTTTTTCGAATAAATTAAAAGAAGAATTTTGTAAAGCTTTGTTTCTGGACATTCCCAATGTTTAATGAACAACAAAGCAAAAATAAAAGCACAGTTTAACATTCAAG</canonical_amplicon>
		<polymorphic_amplicon>AAAACAAGCATTGACCAAGAAAAAACATTTTTCGAAAATGTTCCCGCTTGATTTTTGTGTTGCGACAGAGCGCGCGCTCACTTGGTTACGGTAGCAAAAAAATAATTTTTTCAGACGAAAATCGATTTTTTCGAATAAATTAAAAGAAGAATTTTGTAAAGCTTTGTTTYTGGACATTCCCAATGTTTAATGAACAACAAAGCAAAAATAAAAGCACAGTTTAACATTCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29478</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>94490</contig_pos>
        <strand></strand>
        <context>tgggagatat[C/A]aaaatgaaca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTCTGTAAGAGATATCCAAAATCCGTTAACTGATAAAATATGGGAGATAT</left_flank>
        <right_flank>AAAATGAACAATTTGTTAGTCAAATTTTTTTATATCTTTCAGAGGAAGCG</right_flank>
        <qual_score>49</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAAAAGAGTGGAGAAGCCGGAGGCCAAAAAAAAACAAAAAATAAGCGAAAAAACTGCAGAAGAACGAAAAATTATGGCCGGAAATGCAGAAAACAAGCATTGACCAAGAAAAAACATTTTTCGAAAATGTTCCCGCTTGATTTTTGTGTTGCGACAGAGCGCGCGCTCACTTGGTTACGGTAGCAAAAAAATAATTTTTTCAGACGAAAATCGATTTTTTCGAATAAATTAAAAGAAGAATTTTGTAAAGCTTTGTTTCTGGACATTCCCAATGTTTAATGAACAACAAAGCAAAAATAAAAGCACAGTTTAACATTCAAGTTAGGTTGTTCCAAGAGATGAAAAATGTGGTTGTGAATTCGATGACCCGAAAATTTCAATTATCTATTTCATTTTCTCTAATTGAAGTCCATCCAAACCATCTAATTTGAGCTCAATTATCTAGGTTTCTGTAAGAGATATCCAAAATCCGTTAACTGATAAAATATGGGAGATATCAAAATGAACAATTTGTTAGTCAAATTTTTTTATATCTTTCAGAGGAAGCGAGATATTTGAGCTCAAAGTGCATGCAGAGGGTGGGCTTCTATTAGAGCAAGAACGGTATTTTAAAAAAACTCACTCCAAGTGATCATAGTGATTTCCAAACAACCGATGAAGACAGTCGGTGGGGCAAAGGAAAATCGCCATACAGACCGGGATCGCGCCTCTTGAACTCCTTTTGGGAATCCCATCTTTTCCACTTCACCTAAAGTTAGATCTTCACCTAAAGTTAGATCTTCACCTAAAAATAGATCAATTCAGTAGTCTTCAACATGGTTTTCTCTCCTACAGATCCTGCACCACCTCTCTAGTTCAATCTTTTTCGAATTATAAAGCTACTCTTTTTGAAATACAATACACTAGACGTCGTCTTTTTCGATTTCCGCAAAGCTTTCGACCAGGTGCATCATCAACTTCTCATCCAGAAACTTGCTAGCTTTGGAGTCCCTAAATCT</canonical>
            <polymorphic>TGAAAAAGAGTGGAGAAGCCGGAGGCCAAAAAAAAACAAAAAATAAGCGAAAAAACTGCAGAAGAACGAAAAATTATGGCCGGAAATGCAGAAAACAAGCATTGACCAAGAAAAAACATTTTTCGAAAATGTTCCCGCTTGATTTTTGTGTTGCGACAGAGCGCGCGCTCACTTGGTTACGGTAGCAAAAAAATAATTTTTTCAGACGAAAATCGATTTTTTCGAATAAATTAAAAGAAGAATTTTGTAAAGCTTTGTTTCTGGACATTCCCAATGTTTAATGAACAACAAAGCAAAAATAAAAGCACAGTTTAACATTCAAGTTAGGTTGTTCCAAGAGATGAAAAATGTGGTTGTGAATTCGATGACCCGAAAATTTCAATTATCTATTTCATTTTCTCTAATTGAAGTCCATCCAAACCATCTAATTTGAGCTCAATTATCTAGGTTTCTGTAAGAGATATCCAAAATCCGTTAACTGATAAAATATGGGAGATATMAAAATGAACAATTTGTTAGTCAAATTTTTTTATATCTTTCAGAGGAAGCGAGATATTTGAGCTCAAAGTGCATGCAGAGGGTGGGCTTCTATTAGAGCAAGAACGGTATTTTAAAAAAACTCACTCCAAGTGATCATAGTGATTTCCAAACAACCGATGAAGACAGTCGGTGGGGCAAAGGAAAATCGCCATACAGACCGGGATCGCGCCTCTTGAACTCCTTTTGGGAATCCCATCTTTTCCACTTCACCTAAAGTTAGATCTTCACCTAAAGTTAGATCTTCACCTAAAAATAGATCAATTCAGTAGTCTTCAACATGGTTTTCTCTCCTACAGATCCTGCACCACCTCTCTAGTTCAATCTTTTTCGAATTATAAAGCTACTCTTTTTGAAATACAATACACTAGACGTCGTCTTTTTCGATTTCCGCAAAGCTTTCGACCAGGTGCATCATCAACTTCTCATCCAGAAACTTGCTAGCTTTGGAGTCCCTAAATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>503 462 35</canonical_bands>
                <polymorphic_bands>538 462</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCGAAAATTTCAATTATCTATT</pcr_primer_p1>
		<pcr_primer_p2>TATGATCACTTGGAGTGAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>270</pcr_amplicon_size>
		<canonical_amplicon>CCCGAAAATTTCAATTATCTATTTCATTTTCTCTAATTGAAGTCCATCCAAACCATCTAATTTGAGCTCAATTATCTAGGTTTCTGTAAGAGATATCCAAAATCCGTTAACTGATAAAATATGGGAGATATCAAAATGAACAATTTGTTAGTCAAATTTTTTTATATCTTTCAGAGGAAGCGAGATATTTGAGCTCAAAGTGCATGCAGAGGGTGGGCTTCTATTAGAGCAAGAACGGTATTTTAAAAAAACTCACTCCAAGTGATCATA</canonical_amplicon>
		<polymorphic_amplicon>CCCGAAAATTTCAATTATCTATTTCATTTTCTCTAATTGAAGTCCATCCAAACCATCTAATTTGAGCTCAATTATCTAGGTTTCTGTAAGAGATATCCAAAATCCGTTAACTGATAAAATATGGGAGATATMAAAATGAACAATTTGTTAGTCAAATTTTTTTATATCTTTCAGAGGAAGCGAGATATTTGAGCTCAAAGTGCATGCAGAGGGTGGGCTTCTATTAGAGCAAGAACGGTATTTTAAAAAAACTCACTCCAAGTGATCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29479</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>94579</contig_pos>
        <strand>+</strand>
        <context>gggtgggctt[A/T]tattagagCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAGAGGAAGCGAGATATTTGAGCTCAAAGTGCATGCAGAGGGTGGGCTT</left_flank>
        <right_flank>TATTAGAGCAAGAACGGTATTTTAAAAAAACTCACTCCAAGTGATCATAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAAACAAGCATTGACCAAGAAAAAACATTTTTCGAAAATGTTCCCGCTTGATTTTTGTGTTGCGACAGAGCGCGCGCTCACTTGGTTACGGTAGCAAAAAAATAATTTTTTCAGACGAAAATCGATTTTTTCGAATAAATTAAAAGAAGAATTTTGTAAAGCTTTGTTTCTGGACATTCCCAATGTTTAATGAACAACAAAGCAAAAATAAAAGCACAGTTTAACATTCAAGTTAGGTTGTTCCAAGAGATGAAAAATGTGGTTGTGAATTCGATGACCCGAAAATTTCAATTATCTATTTCATTTTCTCTAATTGAAGTCCATCCAAACCATCTAATTTGAGCTCAATTATCTAGGTTTCTGTAAGAGATATCCAAAATCCGTTAACTGATAAAATATGGGAGATATCAAAATGAACAATTTGTTAGTCAAATTTTTTTATATCTTTCAGAGGAAGCGAGATATTTGAGCTCAAAGTGCATGCAGAGGGTGGGCTTCTATTAGAGCAAGAACGGTATTTTAAAAAAACTCACTCCAAGTGATCATAGTGATTTCCAAACAACCGATGAAGACAGTCGGTGGGGCAAAGGAAAATCGCCATACAGACCGGGATCGCGCCTCTTGAACTCCTTTTGGGAATCCCATCTTTTCCACTTCACCTAAAGTTAGATCTTCACCTAAAGTTAGATCTTCACCTAAAAATAGATCAATTCAGTAGTCTTCAACATGGTTTTCTCTCCTACAGATCCTGCACCACCTCTCTAGTTCAATCTTTTTCGAATTATAAAGCTACTCTTTTTGAAATACAATACACTAGACGTCGTCTTTTTCGATTTCCGCAAAGCTTTCGACCAGGTGCATCATCAACTTCTCATCCAGAAACTTGCTAGCTTTGGAGTCCCTAAATCTTACGTAGCTTGGTTCTCCTCGTTTCTCTCTGGTCGAACGTTCTCTGTCAAAATCTATGATTTTATTGGACCCCCTTCCTCTGTCATTCC</canonical>
            <polymorphic>AGAAAACAAGCATTGACCAAGAAAAAACATTTTTCGAAAATGTTCCCGCTTGATTTTTGTGTTGCGACAGAGCGCGCGCTCACTTGGTTACGGTAGCAAAAAAATAATTTTTTCAGACGAAAATCGATTTTTTCGAATAAATTAAAAGAAGAATTTTGTAAAGCTTTGTTTCTGGACATTCCCAATGTTTAATGAACAACAAAGCAAAAATAAAAGCACAGTTTAACATTCAAGTTAGGTTGTTCCAAGAGATGAAAAATGTGGTTGTGAATTCGATGACCCGAAAATTTCAATTATCTATTTCATTTTCTCTAATTGAAGTCCATCCAAACCATCTAATTTGAGCTCAATTATCTAGGTTTCTGTAAGAGATATCCAAAATCCGTTAACTGATAAAATATGGGAGATATCAAAATGAACAATTTGTTAGTCAAATTTTTTTATATCTTTCAGAGGAAGCGAGATATTTGAGCTCAAAGTGCATGCAGAGGGTGGGCTTWTATTAGAGCAAGAACGGTATTTTAAAAAAACTCACTCCAAGTGATCATAGTGATTTCCAAACAACCGATGAAGACAGTCGGTGGGGCAAAGGAAAATCGCCATACAGACCGGGATCGCGCCTCTTGAACTCCTTTTGGGAATCCCATCTTTTCCACTTCACCTAAAGTTAGATCTTCACCTAAAGTTAGATCTTCACCTAAAAATAGATCAATTCAGTAGTCTTCAACATGGTTTTCTCTCCTACAGATCCTGCACCACCTCTCTAGTTCAATCTTTTTCGAATTATAAAGCTACTCTTTTTGAAATACAATACACTAGACGTCGTCTTTTTCGATTTCCGCAAAGCTTTCGACCAGGTGCATCATCAACTTCTCATCCAGAAACTTGCTAGCTTTGGAGTCCCTAAATCTTACGTAGCTTGGTTCTCCTCGTTTCTCTCTGGTCGAACGTTCTCTGTCAAAATCTATGATTTTATTGGACCCCCTTCCTCTGTCATTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCGAAAATTTCAATTATCTATT</pcr_primer_p1>
		<pcr_primer_p2>TTTGGAAATCACTATGATCACTT</pcr_primer_p2>
		<pcr_amplicon_size>282</pcr_amplicon_size>
		<canonical_amplicon>CCCGAAAATTTCAATTATCTATTTCATTTTCTCTAATTGAAGTCCATCCAAACCATCTAATTTGAGCTCAATTATCTAGGTTTCTGTAAGAGATATCCAAAATCCGTTAACTGATAAAATATGGGAGATATCAAAATGAACAATTTGTTAGTCAAATTTTTTTATATCTTTCAGAGGAAGCGAGATATTTGAGCTCAAAGTGCATGCAGAGGGTGGGCTTCTATTAGAGCAAGAACGGTATTTTAAAAAAACTCACTCCAAGTGATCATAGTGATTTCCAAA</canonical_amplicon>
		<polymorphic_amplicon>CCCGAAAATTTCAATTATCTATTTCATTTTCTCTAATTGAAGTCCATCCAAACCATCTAATTTGAGCTCAATTATCTAGGTTTCTGTAAGAGATATCCAAAATCCGTTAACTGATAAAATATGGGAGATATCAAAATGAACAATTTGTTAGTCAAATTTTTTTATATCTTTCAGAGGAAGCGAGATATTTGAGCTCAAAGTGCATGCAGAGGGTGGGCTTWTATTAGAGCAAGAACGGTATTTTAAAAAAACTCACTCCAAGTGATCATAGTGATTTCCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29480</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>108025</contig_pos>
        <strand></strand>
        <context>taggcctaga[C/A]acttcaaagg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GTCACTTTTTGATAGCTGTTTTGGTCAGCGGCGTCTCTACTAGGCCTAGA</left_flank>
        <right_flank>ACTTCAAAGGCGCATATCTCAAAAACTACAGTAGACTGAATTATGAAAAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAAATTAGTAATTTTCAGAATCTGATCCGAAATATGTGAATTCCAAAAAAGAGACAATAATGGATGAAGTTAGAGGACGAGCTGAACGATGTCTTCTTGGTTTTCAAATCTCGCCAACTTCATTATTGAACTAAACACAAATAGTTAATAAATATTTTTTATTGATTTTTTTTAGTTTTAAGGCACATGTCTCGAAAACTACAGTAGCCTGGAAACTGAGAGTTTTACCAAAGTGTGCAAAATTTTATGCTGAGCAATTTAATAGTTTACAGTATTTTGATAGCTTTTTTGGTTCTTGAGATATGACCGATCGCCGACAGCATGACGTTCGAGTGACACTACTAGGTCGACAGACTTTAAAGTTGCACATCTCAAAAACTACAGTAGCCTAAATAATGAAAATTATAAAGAAATGCGTGAAATTTTATACTGATCGTTTTTGTACTTGGTCACTTTTTGATAGCTGTTTTGGTCAGCGGCGTCTCTACTAGGCCTAGACACTTCAAAGGCGCATATCTCAAAAACTACAGTAGACTGAATTATGAAAACTAGATGAAAATGTGTGGAATTTTATACGGATCATTTTTGTAATTGGTCACTTTTTGATGCGCTTAGTTCTGGAGTTACAAGCGTTTGAAGTTGAGAGGAGAGAGACGCAGAGAAGTCAGAGAGTCTCGTTTCTCTGCGTCTAGAGTGACTAAAGTGACGTACTGCAAAAAAAAGTGAACGCATTCTAACAATTTTTTTTCTTCTTTTTATTCCTCCAGTGCCATCCATCCAAATAGTCAAACAACACATAACAAAAAAGGTGTTGGGAAAAAAAAGAAGAAAAGTAAAAAAGAACCATTGAGGCGGAAGAAAATTGATAATTGCTTAGGAAAACGAGGAGGAAAGAAAGTACTGTGTGTTCACTTTCTAGCGAGGGACATCCTCTTTAAAAAACCGTAATTTTTGAACATGTAGAAAATTTGGAAAATGACCAAAAATCGGAAACAATTG</canonical>
            <polymorphic>GCAAATTAGTAATTTTCAGAATCTGATCCGAAATATGTGAATTCCAAAAAAGAGACAATAATGGATGAAGTTAGAGGACGAGCTGAACGATGTCTTCTTGGTTTTCAAATCTCGCCAACTTCATTATTGAACTAAACACAAATAGTTAATAAATATTTTTTATTGATTTTTTTTAGTTTTAAGGCACATGTCTCGAAAACTACAGTAGCCTGGAAACTGAGAGTTTTACCAAAGTGTGCAAAATTTTATGCTGAGCAATTTAATAGTTTACAGTATTTTGATAGCTTTTTTGGTTCTTGAGATATGACCGATCGCCGACAGCATGACGTTCGAGTGACACTACTAGGTCGACAGACTTTAAAGTTGCACATCTCAAAAACTACAGTAGCCTAAATAATGAAAATTATAAAGAAATGCGTGAAATTTTATACTGATCGTTTTTGTACTTGGTCACTTTTTGATAGCTGTTTTGGTCAGCGGCGTCTCTACTAGGCCTAGAMACTTCAAAGGCGCATATCTCAAAAACTACAGTAGACTGAATTATGAAAACTAGATGAAAATGTGTGGAATTTTATACGGATCATTTTTGTAATTGGTCACTTTTTGATGCGCTTAGTTCTGGAGTTACAAGCGTTTGAAGTTGAGAGGAGAGAGACGCAGAGAAGTCAGAGAGTCTCGTTTCTCTGCGTCTAGAGTGACTAAAGTGACGTACTGCAAAAAAAAGTGAACGCATTCTAACAATTTTTTTTCTTCTTTTTATTCCTCCAGTGCCATCCATCCAAATAGTCAAACAACACATAACAAAAAAGGTGTTGGGAAAAAAAAGAAGAAAAGTAAAAAAGAACCATTGAGGCGGAAGAAAATTGATAATTGCTTAGGAAAACGAGGAGGAAAGAAAGTACTGTGTGTTCACTTTCTAGCGAGGGACATCCTCTTTAAAAAACCGTAATTTTTGAACATGTAGAAAATTTGGAAAATGACCAAAAATCGGAAACAATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>99 98 98 94 88 63 52 50 48 48 44 39 33 33 29 26 20 16 9 4 3 2 2 2</canonical_bands>
                <polymorphic_bands>111 99 98 98 94 88 52 50 48 44 39 33 33 29 26 20 16 9 4 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAACTTCATTATTGAACTAAACA</pcr_primer_p1>
		<pcr_primer_p2>GCAGTACGTCACTTTAGTCACTC</pcr_primer_p2>
		<pcr_amplicon_size>601</pcr_amplicon_size>
		<canonical_amplicon>CCAACTTCATTATTGAACTAAACACAAATAGTTAATAAATATTTTTTATTGATTTTTTTTAGTTTTAAGGCACATGTCTCGAAAACTACAGTAGCCTGGAAACTGAGAGTTTTACCAAAGTGTGCAAAATTTTATGCTGAGCAATTTAATAGTTTACAGTATTTTGATAGCTTTTTTGGTTCTTGAGATATGACCGATCGCCGACAGCATGACGTTCGAGTGACACTACTAGGTCGACAGACTTTAAAGTTGCACATCTCAAAAACTACAGTAGCCTAAATAATGAAAATTATAAAGAAATGCGTGAAATTTTATACTGATCGTTTTTGTACTTGGTCACTTTTTGATAGCTGTTTTGGTCAGCGGCGTCTCTACTAGGCCTAGACACTTCAAAGGCGCATATCTCAAAAACTACAGTAGACTGAATTATGAAAACTAGATGAAAATGTGTGGAATTTTATACGGATCATTTTTGTAATTGGTCACTTTTTGATGCGCTTAGTTCTGGAGTTACAAGCGTTTGAAGTTGAGAGGAGAGAGACGCAGAGAAGTCAGAGAGTCTCGTTTCTCTGCGTCTAGAGTGACTAAAGTGACGTACTGC</canonical_amplicon>
		<polymorphic_amplicon>CCAACTTCATTATTGAACTAAACACAAATAGTTAATAAATATTTTTTATTGATTTTTTTTAGTTTTAAGGCACATGTCTCGAAAACTACAGTAGCCTGGAAACTGAGAGTTTTACCAAAGTGTGCAAAATTTTATGCTGAGCAATTTAATAGTTTACAGTATTTTGATAGCTTTTTTGGTTCTTGAGATATGACCGATCGCCGACAGCATGACGTTCGAGTGACACTACTAGGTCGACAGACTTTAAAGTTGCACATCTCAAAAACTACAGTAGCCTAAATAATGAAAATTATAAAGAAATGCGTGAAATTTTATACTGATCGTTTTTGTACTTGGTCACTTTTTGATAGCTGTTTTGGTCAGCGGCGTCTCTACTAGGCCTAGAMACTTCAAAGGCGCATATCTCAAAAACTACAGTAGACTGAATTATGAAAACTAGATGAAAATGTGTGGAATTTTATACGGATCATTTTTGTAATTGGTCACTTTTTGATGCGCTTAGTTCTGGAGTTACAAGCGTTTGAAGTTGAGAGGAGAGAGACGCAGAGAAGTCAGAGAGTCTCGTTTCTCTGCGTCTAGAGTGACTAAAGTGACGTACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29481</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>108060</contig_pos>
        <strand></strand>
        <context>actacagtag[A/C]ctgaattatg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTACTAGGCCTAGACACTTCAAAGGCGCATATCTCAAAAACTACAGTAG</left_flank>
        <right_flank>CTGAATTATGAAAACTAGATGAAAATGTGTGGAATTTTATACGGATCATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGAATTCCAAAAAAGAGACAATAATGGATGAAGTTAGAGGACGAGCTGAACGATGTCTTCTTGGTTTTCAAATCTCGCCAACTTCATTATTGAACTAAACACAAATAGTTAATAAATATTTTTTATTGATTTTTTTTAGTTTTAAGGCACATGTCTCGAAAACTACAGTAGCCTGGAAACTGAGAGTTTTACCAAAGTGTGCAAAATTTTATGCTGAGCAATTTAATAGTTTACAGTATTTTGATAGCTTTTTTGGTTCTTGAGATATGACCGATCGCCGACAGCATGACGTTCGAGTGACACTACTAGGTCGACAGACTTTAAAGTTGCACATCTCAAAAACTACAGTAGCCTAAATAATGAAAATTATAAAGAAATGCGTGAAATTTTATACTGATCGTTTTTGTACTTGGTCACTTTTTGATAGCTGTTTTGGTCAGCGGCGTCTCTACTAGGCCTAGACACTTCAAAGGCGCATATCTCAAAAACTACAGTAGACTGAATTATGAAAACTAGATGAAAATGTGTGGAATTTTATACGGATCATTTTTGTAATTGGTCACTTTTTGATGCGCTTAGTTCTGGAGTTACAAGCGTTTGAAGTTGAGAGGAGAGAGACGCAGAGAAGTCAGAGAGTCTCGTTTCTCTGCGTCTAGAGTGACTAAAGTGACGTACTGCAAAAAAAAGTGAACGCATTCTAACAATTTTTTTTCTTCTTTTTATTCCTCCAGTGCCATCCATCCAAATAGTCAAACAACACATAACAAAAAAGGTGTTGGGAAAAAAAAGAAGAAAAGTAAAAAAGAACCATTGAGGCGGAAGAAAATTGATAATTGCTTAGGAAAACGAGGAGGAAAGAAAGTACTGTGTGTTCACTTTCTAGCGAGGGACATCCTCTTTAAAAAACCGTAATTTTTGAACATGTAGAAAATTTGGAAAATGACCAAAAATCGGAAACAATTGGGATGAGTCATTTTGTAGTCCAACTATGAGTGCAA</canonical>
            <polymorphic>TGTGAATTCCAAAAAAGAGACAATAATGGATGAAGTTAGAGGACGAGCTGAACGATGTCTTCTTGGTTTTCAAATCTCGCCAACTTCATTATTGAACTAAACACAAATAGTTAATAAATATTTTTTATTGATTTTTTTTAGTTTTAAGGCACATGTCTCGAAAACTACAGTAGCCTGGAAACTGAGAGTTTTACCAAAGTGTGCAAAATTTTATGCTGAGCAATTTAATAGTTTACAGTATTTTGATAGCTTTTTTGGTTCTTGAGATATGACCGATCGCCGACAGCATGACGTTCGAGTGACACTACTAGGTCGACAGACTTTAAAGTTGCACATCTCAAAAACTACAGTAGCCTAAATAATGAAAATTATAAAGAAATGCGTGAAATTTTATACTGATCGTTTTTGTACTTGGTCACTTTTTGATAGCTGTTTTGGTCAGCGGCGTCTCTACTAGGCCTAGACACTTCAAAGGCGCATATCTCAAAAACTACAGTAGMCTGAATTATGAAAACTAGATGAAAATGTGTGGAATTTTATACGGATCATTTTTGTAATTGGTCACTTTTTGATGCGCTTAGTTCTGGAGTTACAAGCGTTTGAAGTTGAGAGGAGAGAGACGCAGAGAAGTCAGAGAGTCTCGTTTCTCTGCGTCTAGAGTGACTAAAGTGACGTACTGCAAAAAAAAGTGAACGCATTCTAACAATTTTTTTTCTTCTTTTTATTCCTCCAGTGCCATCCATCCAAATAGTCAAACAACACATAACAAAAAAGGTGTTGGGAAAAAAAAGAAGAAAAGTAAAAAAGAACCATTGAGGCGGAAGAAAATTGATAATTGCTTAGGAAAACGAGGAGGAAAGAAAGTACTGTGTGTTCACTTTCTAGCGAGGGACATCCTCTTTAAAAAACCGTAATTTTTGAACATGTAGAAAATTTGGAAAATGACCAAAAATCGGAAACAATTGGGATGAGTCATTTTGTAGTCCAACTATGAGTGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 313 184</canonical_bands>
                <polymorphic_bands>687 313</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>233 193 184 184 125 81</canonical_bands>
                <polymorphic_bands>377 233 184 125 81</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAACTTCATTATTGAACTAAACA</pcr_primer_p1>
		<pcr_primer_p2>GCAGTACGTCACTTTAGTCACTC</pcr_primer_p2>
		<pcr_amplicon_size>601</pcr_amplicon_size>
		<canonical_amplicon>CCAACTTCATTATTGAACTAAACACAAATAGTTAATAAATATTTTTTATTGATTTTTTTTAGTTTTAAGGCACATGTCTCGAAAACTACAGTAGCCTGGAAACTGAGAGTTTTACCAAAGTGTGCAAAATTTTATGCTGAGCAATTTAATAGTTTACAGTATTTTGATAGCTTTTTTGGTTCTTGAGATATGACCGATCGCCGACAGCATGACGTTCGAGTGACACTACTAGGTCGACAGACTTTAAAGTTGCACATCTCAAAAACTACAGTAGCCTAAATAATGAAAATTATAAAGAAATGCGTGAAATTTTATACTGATCGTTTTTGTACTTGGTCACTTTTTGATAGCTGTTTTGGTCAGCGGCGTCTCTACTAGGCCTAGACACTTCAAAGGCGCATATCTCAAAAACTACAGTAGACTGAATTATGAAAACTAGATGAAAATGTGTGGAATTTTATACGGATCATTTTTGTAATTGGTCACTTTTTGATGCGCTTAGTTCTGGAGTTACAAGCGTTTGAAGTTGAGAGGAGAGAGACGCAGAGAAGTCAGAGAGTCTCGTTTCTCTGCGTCTAGAGTGACTAAAGTGACGTACTGC</canonical_amplicon>
		<polymorphic_amplicon>CCAACTTCATTATTGAACTAAACACAAATAGTTAATAAATATTTTTTATTGATTTTTTTTAGTTTTAAGGCACATGTCTCGAAAACTACAGTAGCCTGGAAACTGAGAGTTTTACCAAAGTGTGCAAAATTTTATGCTGAGCAATTTAATAGTTTACAGTATTTTGATAGCTTTTTTGGTTCTTGAGATATGACCGATCGCCGACAGCATGACGTTCGAGTGACACTACTAGGTCGACAGACTTTAAAGTTGCACATCTCAAAAACTACAGTAGCCTAAATAATGAAAATTATAAAGAAATGCGTGAAATTTTATACTGATCGTTTTTGTACTTGGTCACTTTTTGATAGCTGTTTTGGTCAGCGGCGTCTCTACTAGGCCTAGACACTTCAAAGGCGCATATCTCAAAAACTACAGTAGMCTGAATTATGAAAACTAGATGAAAATGTGTGGAATTTTATACGGATCATTTTTGTAATTGGTCACTTTTTGATGCGCTTAGTTCTGGAGTTACAAGCGTTTGAAGTTGAGAGGAGAGAGACGCAGAGAAGTCAGAGAGTCTCGTTTCTCTGCGTCTAGAGTGACTAAAGTGACGTACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29482</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>108098</contig_pos>
        <strand></strand>
        <context>tgtggaattt[T/C]atacggatca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAACTACAGTAGACTGAATTATGAAAACTAGATGAAAATGTGTGGAATTT</left_flank>
        <right_flank>ATACGGATCATTTTTGTAATTGGTCACTTTTTGATGCGCTTAGTTCTGGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGACGAGCTGAACGATGTCTTCTTGGTTTTCAAATCTCGCCAACTTCATTATTGAACTAAACACAAATAGTTAATAAATATTTTTTATTGATTTTTTTTAGTTTTAAGGCACATGTCTCGAAAACTACAGTAGCCTGGAAACTGAGAGTTTTACCAAAGTGTGCAAAATTTTATGCTGAGCAATTTAATAGTTTACAGTATTTTGATAGCTTTTTTGGTTCTTGAGATATGACCGATCGCCGACAGCATGACGTTCGAGTGACACTACTAGGTCGACAGACTTTAAAGTTGCACATCTCAAAAACTACAGTAGCCTAAATAATGAAAATTATAAAGAAATGCGTGAAATTTTATACTGATCGTTTTTGTACTTGGTCACTTTTTGATAGCTGTTTTGGTCAGCGGCGTCTCTACTAGGCCTAGACACTTCAAAGGCGCATATCTCAAAAACTACAGTAGACTGAATTATGAAAACTAGATGAAAATGTGTGGAATTTTATACGGATCATTTTTGTAATTGGTCACTTTTTGATGCGCTTAGTTCTGGAGTTACAAGCGTTTGAAGTTGAGAGGAGAGAGACGCAGAGAAGTCAGAGAGTCTCGTTTCTCTGCGTCTAGAGTGACTAAAGTGACGTACTGCAAAAAAAAGTGAACGCATTCTAACAATTTTTTTTCTTCTTTTTATTCCTCCAGTGCCATCCATCCAAATAGTCAAACAACACATAACAAAAAAGGTGTTGGGAAAAAAAAGAAGAAAAGTAAAAAAGAACCATTGAGGCGGAAGAAAATTGATAATTGCTTAGGAAAACGAGGAGGAAAGAAAGTACTGTGTGTTCACTTTCTAGCGAGGGACATCCTCTTTAAAAAACCGTAATTTTTGAACATGTAGAAAATTTGGAAAATGACCAAAAATCGGAAACAATTGGGATGAGTCATTTTGTAGTCCAACTATGAGTGCAAAGGAGGGTTTCGGGGTATGTAAATTTGGTTTGGTTTGA</canonical>
            <polymorphic>GAGGACGAGCTGAACGATGTCTTCTTGGTTTTCAAATCTCGCCAACTTCATTATTGAACTAAACACAAATAGTTAATAAATATTTTTTATTGATTTTTTTTAGTTTTAAGGCACATGTCTCGAAAACTACAGTAGCCTGGAAACTGAGAGTTTTACCAAAGTGTGCAAAATTTTATGCTGAGCAATTTAATAGTTTACAGTATTTTGATAGCTTTTTTGGTTCTTGAGATATGACCGATCGCCGACAGCATGACGTTCGAGTGACACTACTAGGTCGACAGACTTTAAAGTTGCACATCTCAAAAACTACAGTAGCCTAAATAATGAAAATTATAAAGAAATGCGTGAAATTTTATACTGATCGTTTTTGTACTTGGTCACTTTTTGATAGCTGTTTTGGTCAGCGGCGTCTCTACTAGGCCTAGACACTTCAAAGGCGCATATCTCAAAAACTACAGTAGACTGAATTATGAAAACTAGATGAAAATGTGTGGAATTTYATACGGATCATTTTTGTAATTGGTCACTTTTTGATGCGCTTAGTTCTGGAGTTACAAGCGTTTGAAGTTGAGAGGAGAGAGACGCAGAGAAGTCAGAGAGTCTCGTTTCTCTGCGTCTAGAGTGACTAAAGTGACGTACTGCAAAAAAAAGTGAACGCATTCTAACAATTTTTTTTCTTCTTTTTATTCCTCCAGTGCCATCCATCCAAATAGTCAAACAACACATAACAAAAAAGGTGTTGGGAAAAAAAAGAAGAAAAGTAAAAAAGAACCATTGAGGCGGAAGAAAATTGATAATTGCTTAGGAAAACGAGGAGGAAAGAAAGTACTGTGTGTTCACTTTCTAGCGAGGGACATCCTCTTTAAAAAACCGTAATTTTTGAACATGTAGAAAATTTGGAAAATGACCAAAAATCGGAAACAATTGGGATGAGTCATTTTGTAGTCCAACTATGAGTGCAAAGGAGGGTTTCGGGGTATGTAAATTTGGTTTGGTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAACTTCATTATTGAACTAAACA</pcr_primer_p1>
		<pcr_primer_p2>GCAGTACGTCACTTTAGTCACTC</pcr_primer_p2>
		<pcr_amplicon_size>601</pcr_amplicon_size>
		<canonical_amplicon>CCAACTTCATTATTGAACTAAACACAAATAGTTAATAAATATTTTTTATTGATTTTTTTTAGTTTTAAGGCACATGTCTCGAAAACTACAGTAGCCTGGAAACTGAGAGTTTTACCAAAGTGTGCAAAATTTTATGCTGAGCAATTTAATAGTTTACAGTATTTTGATAGCTTTTTTGGTTCTTGAGATATGACCGATCGCCGACAGCATGACGTTCGAGTGACACTACTAGGTCGACAGACTTTAAAGTTGCACATCTCAAAAACTACAGTAGCCTAAATAATGAAAATTATAAAGAAATGCGTGAAATTTTATACTGATCGTTTTTGTACTTGGTCACTTTTTGATAGCTGTTTTGGTCAGCGGCGTCTCTACTAGGCCTAGACACTTCAAAGGCGCATATCTCAAAAACTACAGTAGACTGAATTATGAAAACTAGATGAAAATGTGTGGAATTTTATACGGATCATTTTTGTAATTGGTCACTTTTTGATGCGCTTAGTTCTGGAGTTACAAGCGTTTGAAGTTGAGAGGAGAGAGACGCAGAGAAGTCAGAGAGTCTCGTTTCTCTGCGTCTAGAGTGACTAAAGTGACGTACTGC</canonical_amplicon>
		<polymorphic_amplicon>CCAACTTCATTATTGAACTAAACACAAATAGTTAATAAATATTTTTTATTGATTTTTTTTAGTTTTAAGGCACATGTCTCGAAAACTACAGTAGCCTGGAAACTGAGAGTTTTACCAAAGTGTGCAAAATTTTATGCTGAGCAATTTAATAGTTTACAGTATTTTGATAGCTTTTTTGGTTCTTGAGATATGACCGATCGCCGACAGCATGACGTTCGAGTGACACTACTAGGTCGACAGACTTTAAAGTTGCACATCTCAAAAACTACAGTAGCCTAAATAATGAAAATTATAAAGAAATGCGTGAAATTTTATACTGATCGTTTTTGTACTTGGTCACTTTTTGATAGCTGTTTTGGTCAGCGGCGTCTCTACTAGGCCTAGACACTTCAAAGGCGCATATCTCAAAAACTACAGTAGACTGAATTATGAAAACTAGATGAAAATGTGTGGAATTTYATACGGATCATTTTTGTAATTGGTCACTTTTTGATGCGCTTAGTTCTGGAGTTACAAGCGTTTGAAGTTGAGAGGAGAGAGACGCAGAGAAGTCAGAGAGTCTCGTTTCTCTGCGTCTAGAGTGACTAAAGTGACGTACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29483</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>108119</contig_pos>
        <strand></strand>
        <context>tttttgtaat[T/C]ggtcactttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGAAAACTAGATGAAAATGTGTGGAATTTTATACGGATCATTTTTGTAAT</left_flank>
        <right_flank>GGTCACTTTTTGATGCGCTTAGTTCTGGAGTTACAAGCGTTTGAAGTTGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTGGTTTTCAAATCTCGCCAACTTCATTATTGAACTAAACACAAATAGTTAATAAATATTTTTTATTGATTTTTTTTAGTTTTAAGGCACATGTCTCGAAAACTACAGTAGCCTGGAAACTGAGAGTTTTACCAAAGTGTGCAAAATTTTATGCTGAGCAATTTAATAGTTTACAGTATTTTGATAGCTTTTTTGGTTCTTGAGATATGACCGATCGCCGACAGCATGACGTTCGAGTGACACTACTAGGTCGACAGACTTTAAAGTTGCACATCTCAAAAACTACAGTAGCCTAAATAATGAAAATTATAAAGAAATGCGTGAAATTTTATACTGATCGTTTTTGTACTTGGTCACTTTTTGATAGCTGTTTTGGTCAGCGGCGTCTCTACTAGGCCTAGACACTTCAAAGGCGCATATCTCAAAAACTACAGTAGACTGAATTATGAAAACTAGATGAAAATGTGTGGAATTTTATACGGATCATTTTTGTAATTGGTCACTTTTTGATGCGCTTAGTTCTGGAGTTACAAGCGTTTGAAGTTGAGAGGAGAGAGACGCAGAGAAGTCAGAGAGTCTCGTTTCTCTGCGTCTAGAGTGACTAAAGTGACGTACTGCAAAAAAAAGTGAACGCATTCTAACAATTTTTTTTCTTCTTTTTATTCCTCCAGTGCCATCCATCCAAATAGTCAAACAACACATAACAAAAAAGGTGTTGGGAAAAAAAAGAAGAAAAGTAAAAAAGAACCATTGAGGCGGAAGAAAATTGATAATTGCTTAGGAAAACGAGGAGGAAAGAAAGTACTGTGTGTTCACTTTCTAGCGAGGGACATCCTCTTTAAAAAACCGTAATTTTTGAACATGTAGAAAATTTGGAAAATGACCAAAAATCGGAAACAATTGGGATGAGTCATTTTGTAGTCCAACTATGAGTGCAAAGGAGGGTTTCGGGGTATGTAAATTTGGTTTGGTTTGAAGAGAGAGAGAGAGAGAGAGA</canonical>
            <polymorphic>TTCTTGGTTTTCAAATCTCGCCAACTTCATTATTGAACTAAACACAAATAGTTAATAAATATTTTTTATTGATTTTTTTTAGTTTTAAGGCACATGTCTCGAAAACTACAGTAGCCTGGAAACTGAGAGTTTTACCAAAGTGTGCAAAATTTTATGCTGAGCAATTTAATAGTTTACAGTATTTTGATAGCTTTTTTGGTTCTTGAGATATGACCGATCGCCGACAGCATGACGTTCGAGTGACACTACTAGGTCGACAGACTTTAAAGTTGCACATCTCAAAAACTACAGTAGCCTAAATAATGAAAATTATAAAGAAATGCGTGAAATTTTATACTGATCGTTTTTGTACTTGGTCACTTTTTGATAGCTGTTTTGGTCAGCGGCGTCTCTACTAGGCCTAGACACTTCAAAGGCGCATATCTCAAAAACTACAGTAGACTGAATTATGAAAACTAGATGAAAATGTGTGGAATTTTATACGGATCATTTTTGTAATYGGTCACTTTTTGATGCGCTTAGTTCTGGAGTTACAAGCGTTTGAAGTTGAGAGGAGAGAGACGCAGAGAAGTCAGAGAGTCTCGTTTCTCTGCGTCTAGAGTGACTAAAGTGACGTACTGCAAAAAAAAGTGAACGCATTCTAACAATTTTTTTTCTTCTTTTTATTCCTCCAGTGCCATCCATCCAAATAGTCAAACAACACATAACAAAAAAGGTGTTGGGAAAAAAAAGAAGAAAAGTAAAAAAGAACCATTGAGGCGGAAGAAAATTGATAATTGCTTAGGAAAACGAGGAGGAAAGAAAGTACTGTGTGTTCACTTTCTAGCGAGGGACATCCTCTTTAAAAAACCGTAATTTTTGAACATGTAGAAAATTTGGAAAATGACCAAAAATCGGAAACAATTGGGATGAGTCATTTTGTAGTCCAACTATGAGTGCAAAGGAGGGTTTCGGGGTATGTAAATTTGGTTTGGTTTGAAGAGAGAGAGAGAGAGAGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>149 147 145 122 117 79 61 38 29 29 23 20 19 15 7</canonical_bands>
                <polymorphic_bands>172 147 145 122 117 79 61 38 29 29 20 19 15 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAACTTCATTATTGAACTAAACA</pcr_primer_p1>
		<pcr_primer_p2>GCAGTACGTCACTTTAGTCACTC</pcr_primer_p2>
		<pcr_amplicon_size>601</pcr_amplicon_size>
		<canonical_amplicon>CCAACTTCATTATTGAACTAAACACAAATAGTTAATAAATATTTTTTATTGATTTTTTTTAGTTTTAAGGCACATGTCTCGAAAACTACAGTAGCCTGGAAACTGAGAGTTTTACCAAAGTGTGCAAAATTTTATGCTGAGCAATTTAATAGTTTACAGTATTTTGATAGCTTTTTTGGTTCTTGAGATATGACCGATCGCCGACAGCATGACGTTCGAGTGACACTACTAGGTCGACAGACTTTAAAGTTGCACATCTCAAAAACTACAGTAGCCTAAATAATGAAAATTATAAAGAAATGCGTGAAATTTTATACTGATCGTTTTTGTACTTGGTCACTTTTTGATAGCTGTTTTGGTCAGCGGCGTCTCTACTAGGCCTAGACACTTCAAAGGCGCATATCTCAAAAACTACAGTAGACTGAATTATGAAAACTAGATGAAAATGTGTGGAATTTTATACGGATCATTTTTGTAATTGGTCACTTTTTGATGCGCTTAGTTCTGGAGTTACAAGCGTTTGAAGTTGAGAGGAGAGAGACGCAGAGAAGTCAGAGAGTCTCGTTTCTCTGCGTCTAGAGTGACTAAAGTGACGTACTGC</canonical_amplicon>
		<polymorphic_amplicon>CCAACTTCATTATTGAACTAAACACAAATAGTTAATAAATATTTTTTATTGATTTTTTTTAGTTTTAAGGCACATGTCTCGAAAACTACAGTAGCCTGGAAACTGAGAGTTTTACCAAAGTGTGCAAAATTTTATGCTGAGCAATTTAATAGTTTACAGTATTTTGATAGCTTTTTTGGTTCTTGAGATATGACCGATCGCCGACAGCATGACGTTCGAGTGACACTACTAGGTCGACAGACTTTAAAGTTGCACATCTCAAAAACTACAGTAGCCTAAATAATGAAAATTATAAAGAAATGCGTGAAATTTTATACTGATCGTTTTTGTACTTGGTCACTTTTTGATAGCTGTTTTGGTCAGCGGCGTCTCTACTAGGCCTAGACACTTCAAAGGCGCATATCTCAAAAACTACAGTAGACTGAATTATGAAAACTAGATGAAAATGTGTGGAATTTTATACGGATCATTTTTGTAATYGGTCACTTTTTGATGCGCTTAGTTCTGGAGTTACAAGCGTTTGAAGTTGAGAGGAGAGAGACGCAGAGAAGTCAGAGAGTCTCGTTTCTCTGCGTCTAGAGTGACTAAAGTGACGTACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29484</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>108134</contig_pos>
        <strand></strand>
        <context>actttttgat[G/A]cgcttagttc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATGTGTGGAATTTTATACGGATCATTTTTGTAATTGGTCACTTTTTGAT</left_flank>
        <right_flank>CGCTTAGTTCTGGAGTTACAAGCGTTTGAAGTTGAGAGGAGAGAGACGCA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCGCCAACTTCATTATTGAACTAAACACAAATAGTTAATAAATATTTTTTATTGATTTTTTTTAGTTTTAAGGCACATGTCTCGAAAACTACAGTAGCCTGGAAACTGAGAGTTTTACCAAAGTGTGCAAAATTTTATGCTGAGCAATTTAATAGTTTACAGTATTTTGATAGCTTTTTTGGTTCTTGAGATATGACCGATCGCCGACAGCATGACGTTCGAGTGACACTACTAGGTCGACAGACTTTAAAGTTGCACATCTCAAAAACTACAGTAGCCTAAATAATGAAAATTATAAAGAAATGCGTGAAATTTTATACTGATCGTTTTTGTACTTGGTCACTTTTTGATAGCTGTTTTGGTCAGCGGCGTCTCTACTAGGCCTAGACACTTCAAAGGCGCATATCTCAAAAACTACAGTAGACTGAATTATGAAAACTAGATGAAAATGTGTGGAATTTTATACGGATCATTTTTGTAATTGGTCACTTTTTGATGCGCTTAGTTCTGGAGTTACAAGCGTTTGAAGTTGAGAGGAGAGAGACGCAGAGAAGTCAGAGAGTCTCGTTTCTCTGCGTCTAGAGTGACTAAAGTGACGTACTGCAAAAAAAAGTGAACGCATTCTAACAATTTTTTTTCTTCTTTTTATTCCTCCAGTGCCATCCATCCAAATAGTCAAACAACACATAACAAAAAAGGTGTTGGGAAAAAAAAGAAGAAAAGTAAAAAAGAACCATTGAGGCGGAAGAAAATTGATAATTGCTTAGGAAAACGAGGAGGAAAGAAAGTACTGTGTGTTCACTTTCTAGCGAGGGACATCCTCTTTAAAAAACCGTAATTTTTGAACATGTAGAAAATTTGGAAAATGACCAAAAATCGGAAACAATTGGGATGAGTCATTTTGTAGTCCAACTATGAGTGCAAAGGAGGGTTTCGGGGTATGTAAATTTGGTTTGGTTTGAAGAGAGAGAGAGAGAGAGAGAGAATGGAAAAGGTGT</canonical>
            <polymorphic>TCTCGCCAACTTCATTATTGAACTAAACACAAATAGTTAATAAATATTTTTTATTGATTTTTTTTAGTTTTAAGGCACATGTCTCGAAAACTACAGTAGCCTGGAAACTGAGAGTTTTACCAAAGTGTGCAAAATTTTATGCTGAGCAATTTAATAGTTTACAGTATTTTGATAGCTTTTTTGGTTCTTGAGATATGACCGATCGCCGACAGCATGACGTTCGAGTGACACTACTAGGTCGACAGACTTTAAAGTTGCACATCTCAAAAACTACAGTAGCCTAAATAATGAAAATTATAAAGAAATGCGTGAAATTTTATACTGATCGTTTTTGTACTTGGTCACTTTTTGATAGCTGTTTTGGTCAGCGGCGTCTCTACTAGGCCTAGACACTTCAAAGGCGCATATCTCAAAAACTACAGTAGACTGAATTATGAAAACTAGATGAAAATGTGTGGAATTTTATACGGATCATTTTTGTAATTGGTCACTTTTTGATRCGCTTAGTTCTGGAGTTACAAGCGTTTGAAGTTGAGAGGAGAGAGACGCAGAGAAGTCAGAGAGTCTCGTTTCTCTGCGTCTAGAGTGACTAAAGTGACGTACTGCAAAAAAAAGTGAACGCATTCTAACAATTTTTTTTCTTCTTTTTATTCCTCCAGTGCCATCCATCCAAATAGTCAAACAACACATAACAAAAAAGGTGTTGGGAAAAAAAAGAAGAAAAGTAAAAAAGAACCATTGAGGCGGAAGAAAATTGATAATTGCTTAGGAAAACGAGGAGGAAAGAAAGTACTGTGTGTTCACTTTCTAGCGAGGGACATCCTCTTTAAAAAACCGTAATTTTTGAACATGTAGAAAATTTGGAAAATGACCAAAAATCGGAAACAATTGGGATGAGTCATTTTGTAGTCCAACTATGAGTGCAAAGGAGGGTTTCGGGGTATGTAAATTTGGTTTGGTTTGAAGAGAGAGAGAGAGAGAGAGAGAATGGAAAAGGTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>498 403 99</canonical_bands>
                <polymorphic_bands>597 403</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAACTTCATTATTGAACTAAACA</pcr_primer_p1>
		<pcr_primer_p2>GCAGTACGTCACTTTAGTCACTC</pcr_primer_p2>
		<pcr_amplicon_size>601</pcr_amplicon_size>
		<canonical_amplicon>CCAACTTCATTATTGAACTAAACACAAATAGTTAATAAATATTTTTTATTGATTTTTTTTAGTTTTAAGGCACATGTCTCGAAAACTACAGTAGCCTGGAAACTGAGAGTTTTACCAAAGTGTGCAAAATTTTATGCTGAGCAATTTAATAGTTTACAGTATTTTGATAGCTTTTTTGGTTCTTGAGATATGACCGATCGCCGACAGCATGACGTTCGAGTGACACTACTAGGTCGACAGACTTTAAAGTTGCACATCTCAAAAACTACAGTAGCCTAAATAATGAAAATTATAAAGAAATGCGTGAAATTTTATACTGATCGTTTTTGTACTTGGTCACTTTTTGATAGCTGTTTTGGTCAGCGGCGTCTCTACTAGGCCTAGACACTTCAAAGGCGCATATCTCAAAAACTACAGTAGACTGAATTATGAAAACTAGATGAAAATGTGTGGAATTTTATACGGATCATTTTTGTAATTGGTCACTTTTTGATGCGCTTAGTTCTGGAGTTACAAGCGTTTGAAGTTGAGAGGAGAGAGACGCAGAGAAGTCAGAGAGTCTCGTTTCTCTGCGTCTAGAGTGACTAAAGTGACGTACTGC</canonical_amplicon>
		<polymorphic_amplicon>CCAACTTCATTATTGAACTAAACACAAATAGTTAATAAATATTTTTTATTGATTTTTTTTAGTTTTAAGGCACATGTCTCGAAAACTACAGTAGCCTGGAAACTGAGAGTTTTACCAAAGTGTGCAAAATTTTATGCTGAGCAATTTAATAGTTTACAGTATTTTGATAGCTTTTTTGGTTCTTGAGATATGACCGATCGCCGACAGCATGACGTTCGAGTGACACTACTAGGTCGACAGACTTTAAAGTTGCACATCTCAAAAACTACAGTAGCCTAAATAATGAAAATTATAAAGAAATGCGTGAAATTTTATACTGATCGTTTTTGTACTTGGTCACTTTTTGATAGCTGTTTTGGTCAGCGGCGTCTCTACTAGGCCTAGACACTTCAAAGGCGCATATCTCAAAAACTACAGTAGACTGAATTATGAAAACTAGATGAAAATGTGTGGAATTTTATACGGATCATTTTTGTAATTGGTCACTTTTTGATRCGCTTAGTTCTGGAGTTACAAGCGTTTGAAGTTGAGAGGAGAGAGACGCAGAGAAGTCAGAGAGTCTCGTTTCTCTGCGTCTAGAGTGACTAAAGTGACGTACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29485</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>108448</contig_pos>
        <strand>+</strand>
        <context>CTTTCTAGCG[A/G]GGGACATCCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTTAGGAAAACGAGGAGGAAAGAAAGTACTGTGTGTTCACTTTCTAGCG</left_flank>
        <right_flank>GGGACATCCTCTTTAAAAAACCGTAATTTTTGAACATGTAGAAAATTTGG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTATACTGATCGTTTTTGTACTTGGTCACTTTTTGATAGCTGTTTTGGTCAGCGGCGTCTCTACTAGGCCTAGACACTTCAAAGGCGCATATCTCAAAAACTACAGTAGACTGAATTATGAAAACTAGATGAAAATGTGTGGAATTTTATACGGATCATTTTTGTAATTGGTCACTTTTTGATGCGCTTAGTTCTGGAGTTACAAGCGTTTGAAGTTGAGAGGAGAGAGACGCAGAGAAGTCAGAGAGTCTCGTTTCTCTGCGTCTAGAGTGACTAAAGTGACGTACTGCAAAAAAAAGTGAACGCATTCTAACAATTTTTTTTCTTCTTTTTATTCCTCCAGTGCCATCCATCCAAATAGTCAAACAACACATAACAAAAAAGGTGTTGGGAAAAAAAAGAAGAAAAGTAAAAAAGAACCATTGAGGCGGAAGAAAATTGATAATTGCTTAGGAAAACGAGGAGGAAAGAAAGTACTGTGTGTTCACTTTCTAGCGAGGGACATCCTCTTTAAAAAACCGTAATTTTTGAACATGTAGAAAATTTGGAAAATGACCAAAAATCGGAAACAATTGGGATGAGTCATTTTGTAGTCCAACTATGAGTGCAAAGGAGGGTTTCGGGGTATGTAAATTTGGTTTGGTTTGAAGAGAGAGAGAGAGAGAGAGAGAATGGAAAAGGTGTTATCTCTTTCAGTGTTTGCACAAAATTGGAACTACAGTAATTCAGAAATTTTGAAAAAATTGAGCTAGAAACGCACACAAATTTCTAGCTTGAAAAACCCCCATCTCGAAAAATTGGCAATATCTCAAAAACGGTGGTAGCTATCAAAATTGTTTCAATTATAAAATCACTCAGCATATAATTTTTCACATTTTTCAAGTTTTCAGTTTTTCCTAACAACAGTAATTTTGAGCTGATATGCGCCTTTAAAAATAGAATCTTCAAATACAATACCTCCGCTTGAAGGAAGCCCGCGAAATACTTGAACTTTGAGA</canonical>
            <polymorphic>TTTTATACTGATCGTTTTTGTACTTGGTCACTTTTTGATAGCTGTTTTGGTCAGCGGCGTCTCTACTAGGCCTAGACACTTCAAAGGCGCATATCTCAAAAACTACAGTAGACTGAATTATGAAAACTAGATGAAAATGTGTGGAATTTTATACGGATCATTTTTGTAATTGGTCACTTTTTGATGCGCTTAGTTCTGGAGTTACAAGCGTTTGAAGTTGAGAGGAGAGAGACGCAGAGAAGTCAGAGAGTCTCGTTTCTCTGCGTCTAGAGTGACTAAAGTGACGTACTGCAAAAAAAAGTGAACGCATTCTAACAATTTTTTTTCTTCTTTTTATTCCTCCAGTGCCATCCATCCAAATAGTCAAACAACACATAACAAAAAAGGTGTTGGGAAAAAAAAGAAGAAAAGTAAAAAAGAACCATTGAGGCGGAAGAAAATTGATAATTGCTTAGGAAAACGAGGAGGAAAGAAAGTACTGTGTGTTCACTTTCTAGCGRGGGACATCCTCTTTAAAAAACCGTAATTTTTGAACATGTAGAAAATTTGGAAAATGACCAAAAATCGGAAACAATTGGGATGAGTCATTTTGTAGTCCAACTATGAGTGCAAAGGAGGGTTTCGGGGTATGTAAATTTGGTTTGGTTTGAAGAGAGAGAGAGAGAGAGAGAGAATGGAAAAGGTGTTATCTCTTTCAGTGTTTGCACAAAATTGGAACTACAGTAATTCAGAAATTTTGAAAAAATTGAGCTAGAAACGCACACAAATTTCTAGCTTGAAAAACCCCCATCTCGAAAAATTGGCAATATCTCAAAAACGGTGGTAGCTATCAAAATTGTTTCAATTATAAAATCACTCAGCATATAATTTTTCACATTTTTCAAGTTTTCAGTTTTTCCTAACAACAGTAATTTTGAGCTGATATGCGCCTTTAAAAATAGAATCTTCAAATACAATACCTCCGCTTGAAGGAAGCCCGCGAAATACTTGAACTTTGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTCAAACAACACATAACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GCACTCATAGTTGGACTACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGTCAAACAACACATAACAAAAAAGGTGTTGGGAAAAAAAAGAAGAAAAGTAAAAAAGAACCATTGAGGCGGAAGAAAATTGATAATTGCTTAGGAAAACGAGGAGGAAAGAAAGTACTGTGTGTTCACTTTCTAGCGAGGGACATCCTCTTTAAAAAACCGTAATTTTTGAACATGTAGAAAATTTGGAAAATGACCAAAAATCGGAAACAATTGGGATGAGTCATTTTGTAGTCCAACTATGAGTGC</canonical_amplicon>
		<polymorphic_amplicon>TAGTCAAACAACACATAACAAAAAAGGTGTTGGGAAAAAAAAGAAGAAAAGTAAAAAAGAACCATTGAGGCGGAAGAAAATTGATAATTGCTTAGGAAAACGAGGAGGAAAGAAAGTACTGTGTGTTCACTTTCTAGCGRGGGACATCCTCTTTAAAAAACCGTAATTTTTGAACATGTAGAAAATTTGGAAAATGACCAAAAATCGGAAACAATTGGGATGAGTCATTTTGTAGTCCAACTATGAGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29486</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>108531</contig_pos>
        <strand>+</strand>
        <context>AATTGGGATG[A/G]GTCATTTTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACATGTAGAAAATTTGGAAAATGACCAAAAATCGGAAACAATTGGGATG</left_flank>
        <right_flank>GTCATTTTGTAGTCCAACTATGAGTGCAAAGGAGGGTTTCGGGGTATGTA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGGCGCATATCTCAAAAACTACAGTAGACTGAATTATGAAAACTAGATGAAAATGTGTGGAATTTTATACGGATCATTTTTGTAATTGGTCACTTTTTGATGCGCTTAGTTCTGGAGTTACAAGCGTTTGAAGTTGAGAGGAGAGAGACGCAGAGAAGTCAGAGAGTCTCGTTTCTCTGCGTCTAGAGTGACTAAAGTGACGTACTGCAAAAAAAAGTGAACGCATTCTAACAATTTTTTTTCTTCTTTTTATTCCTCCAGTGCCATCCATCCAAATAGTCAAACAACACATAACAAAAAAGGTGTTGGGAAAAAAAAGAAGAAAAGTAAAAAAGAACCATTGAGGCGGAAGAAAATTGATAATTGCTTAGGAAAACGAGGAGGAAAGAAAGTACTGTGTGTTCACTTTCTAGCGAGGGACATCCTCTTTAAAAAACCGTAATTTTTGAACATGTAGAAAATTTGGAAAATGACCAAAAATCGGAAACAATTGGGATGAGTCATTTTGTAGTCCAACTATGAGTGCAAAGGAGGGTTTCGGGGTATGTAAATTTGGTTTGGTTTGAAGAGAGAGAGAGAGAGAGAGAGAATGGAAAAGGTGTTATCTCTTTCAGTGTTTGCACAAAATTGGAACTACAGTAATTCAGAAATTTTGAAAAAATTGAGCTAGAAACGCACACAAATTTCTAGCTTGAAAAACCCCCATCTCGAAAAATTGGCAATATCTCAAAAACGGTGGTAGCTATCAAAATTGTTTCAATTATAAAATCACTCAGCATATAATTTTTCACATTTTTCAAGTTTTCAGTTTTTCCTAACAACAGTAATTTTGAGCTGATATGCGCCTTTAAAAATAGAATCTTCAAATACAATACCTCCGCTTGAAGGAAGCCCGCGAAATACTTGAACTTTGAGATTAATTATCTCCGTTCTCATGAAAGATCTCAAAATGTTGTCAACTAATAAATTATTTATCACAATATCAAAAACATTTTATCA</canonical>
            <polymorphic>AAGGCGCATATCTCAAAAACTACAGTAGACTGAATTATGAAAACTAGATGAAAATGTGTGGAATTTTATACGGATCATTTTTGTAATTGGTCACTTTTTGATGCGCTTAGTTCTGGAGTTACAAGCGTTTGAAGTTGAGAGGAGAGAGACGCAGAGAAGTCAGAGAGTCTCGTTTCTCTGCGTCTAGAGTGACTAAAGTGACGTACTGCAAAAAAAAGTGAACGCATTCTAACAATTTTTTTTCTTCTTTTTATTCCTCCAGTGCCATCCATCCAAATAGTCAAACAACACATAACAAAAAAGGTGTTGGGAAAAAAAAGAAGAAAAGTAAAAAAGAACCATTGAGGCGGAAGAAAATTGATAATTGCTTAGGAAAACGAGGAGGAAAGAAAGTACTGTGTGTTCACTTTCTAGCGAGGGACATCCTCTTTAAAAAACCGTAATTTTTGAACATGTAGAAAATTTGGAAAATGACCAAAAATCGGAAACAATTGGGATGRGTCATTTTGTAGTCCAACTATGAGTGCAAAGGAGGGTTTCGGGGTATGTAAATTTGGTTTGGTTTGAAGAGAGAGAGAGAGAGAGAGAGAATGGAAAAGGTGTTATCTCTTTCAGTGTTTGCACAAAATTGGAACTACAGTAATTCAGAAATTTTGAAAAAATTGAGCTAGAAACGCACACAAATTTCTAGCTTGAAAAACCCCCATCTCGAAAAATTGGCAATATCTCAAAAACGGTGGTAGCTATCAAAATTGTTTCAATTATAAAATCACTCAGCATATAATTTTTCACATTTTTCAAGTTTTCAGTTTTTCCTAACAACAGTAATTTTGAGCTGATATGCGCCTTTAAAAATAGAATCTTCAAATACAATACCTCCGCTTGAAGGAAGCCCGCGAAATACTTGAACTTTGAGATTAATTATCTCCGTTCTCATGAAAGATCTCAAAATGTTGTCAACTAATAAATTATTTATCACAATATCAAAAACATTTTATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>359 334 165 142</canonical_bands>
                <polymorphic_bands>693 165 142</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAGAAAATTGATAATTGCTTAG</pcr_primer_p1>
		<pcr_primer_p2>CAAACCAAACCAAATTTACATAC</pcr_primer_p2>
		<pcr_amplicon_size>218</pcr_amplicon_size>
		<canonical_amplicon>GGAAGAAAATTGATAATTGCTTAGGAAAACGAGGAGGAAAGAAAGTACTGTGTGTTCACTTTCTAGCGAGGGACATCCTCTTTAAAAAACCGTAATTTTTGAACATGTAGAAAATTTGGAAAATGACCAAAAATCGGAAACAATTGGGATGAGTCATTTTGTAGTCCAACTATGAGTGCAAAGGAGGGTTTCGGGGTATGTAAATTTGGTTTGGTTTG</canonical_amplicon>
		<polymorphic_amplicon>GGAAGAAAATTGATAATTGCTTAGGAAAACGAGGAGGAAAGAAAGTACTGTGTGTTCACTTTCTAGCGAGGGACATCCTCTTTAAAAAACCGTAATTTTTGAACATGTAGAAAATTTGGAAAATGACCAAAAATCGGAAACAATTGGGATGRGTCATTTTGTAGTCCAACTATGAGTGCAAAGGAGGGTTTCGGGGTATGTAAATTTGGTTTGGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29487</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>108709</contig_pos>
        <strand></strand>
        <context>ctagaaacgc[A/C]cacaaatttc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTGGAACTACAGTAATTCAGAAATTTTGAAAAAATTGAGCTAGAAACGC</left_flank>
        <right_flank>CACAAATTTCTAGCTTGAAAAACCCCCATCTCGAAAAATTGGCAATATCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCGTCTAGAGTGACTAAAGTGACGTACTGCAAAAAAAAGTGAACGCATTCTAACAATTTTTTTTCTTCTTTTTATTCCTCCAGTGCCATCCATCCAAATAGTCAAACAACACATAACAAAAAAGGTGTTGGGAAAAAAAAGAAGAAAAGTAAAAAAGAACCATTGAGGCGGAAGAAAATTGATAATTGCTTAGGAAAACGAGGAGGAAAGAAAGTACTGTGTGTTCACTTTCTAGCGAGGGACATCCTCTTTAAAAAACCGTAATTTTTGAACATGTAGAAAATTTGGAAAATGACCAAAAATCGGAAACAATTGGGATGAGTCATTTTGTAGTCCAACTATGAGTGCAAAGGAGGGTTTCGGGGTATGTAAATTTGGTTTGGTTTGAAGAGAGAGAGAGAGAGAGAGAGAATGGAAAAGGTGTTATCTCTTTCAGTGTTTGCACAAAATTGGAACTACAGTAATTCAGAAATTTTGAAAAAATTGAGCTAGAAACGCACACAAATTTCTAGCTTGAAAAACCCCCATCTCGAAAAATTGGCAATATCTCAAAAACGGTGGTAGCTATCAAAATTGTTTCAATTATAAAATCACTCAGCATATAATTTTTCACATTTTTCAAGTTTTCAGTTTTTCCTAACAACAGTAATTTTGAGCTGATATGCGCCTTTAAAAATAGAATCTTCAAATACAATACCTCCGCTTGAAGGAAGCCCGCGAAATACTTGAACTTTGAGATTAATTATCTCCGTTCTCATGAAAGATCTCAAAATGTTGTCAACTAATAAATTATTTATCACAATATCAAAAACATTTTATCAGTTAACAAATTTTTGATATCTCTCATAGGAATCGAGATAAATTGGCTCAAAGTTGATTTTGTAATATTCTCATTTGATTTTCATGAAAAAAAAAACCCTGGAAGAGGAAGAGGGAAAGAACAGAAAGCATTTACCTGCCGGCGTGAAAGTCCATGCCGGCAAGCTAAAAAAAAAGTCC</canonical>
            <polymorphic>TGCGTCTAGAGTGACTAAAGTGACGTACTGCAAAAAAAAGTGAACGCATTCTAACAATTTTTTTTCTTCTTTTTATTCCTCCAGTGCCATCCATCCAAATAGTCAAACAACACATAACAAAAAAGGTGTTGGGAAAAAAAAGAAGAAAAGTAAAAAAGAACCATTGAGGCGGAAGAAAATTGATAATTGCTTAGGAAAACGAGGAGGAAAGAAAGTACTGTGTGTTCACTTTCTAGCGAGGGACATCCTCTTTAAAAAACCGTAATTTTTGAACATGTAGAAAATTTGGAAAATGACCAAAAATCGGAAACAATTGGGATGAGTCATTTTGTAGTCCAACTATGAGTGCAAAGGAGGGTTTCGGGGTATGTAAATTTGGTTTGGTTTGAAGAGAGAGAGAGAGAGAGAGAGAATGGAAAAGGTGTTATCTCTTTCAGTGTTTGCACAAAATTGGAACTACAGTAATTCAGAAATTTTGAAAAAATTGAGCTAGAAACGCMCACAAATTTCTAGCTTGAAAAACCCCCATCTCGAAAAATTGGCAATATCTCAAAAACGGTGGTAGCTATCAAAATTGTTTCAATTATAAAATCACTCAGCATATAATTTTTCACATTTTTCAAGTTTTCAGTTTTTCCTAACAACAGTAATTTTGAGCTGATATGCGCCTTTAAAAATAGAATCTTCAAATACAATACCTCCGCTTGAAGGAAGCCCGCGAAATACTTGAACTTTGAGATTAATTATCTCCGTTCTCATGAAAGATCTCAAAATGTTGTCAACTAATAAATTATTTATCACAATATCAAAAACATTTTATCAGTTAACAAATTTTTGATATCTCTCATAGGAATCGAGATAAATTGGCTCAAAGTTGATTTTGTAATATTCTCATTTGATTTTCATGAAAAAAAAAACCCTGGAAGAGGAAGAGGGAAAGAACAGAAAGCATTTACCTGCCGGCGTGAAAGTCCATGCCGGCAAGCTAAAAAAAAAGTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>187 167 120 94 76 59 55 44 33 33 26 20 19 16 15 13 9 6 4 2 2</canonical_bands>
                <polymorphic_bands>187 167 120 94 76 59 57 44 33 33 26 20 19 16 15 13 9 6 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATGTAAATTTGGTTTGGTTTG</pcr_primer_p1>
		<pcr_primer_p2>CGGAGGTATTGTATTTGAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>338</pcr_amplicon_size>
		<canonical_amplicon>GTATGTAAATTTGGTTTGGTTTGAAGAGAGAGAGAGAGAGAGAGAGAATGGAAAAGGTGTTATCTCTTTCAGTGTTTGCACAAAATTGGAACTACAGTAATTCAGAAATTTTGAAAAAATTGAGCTAGAAACGCACACAAATTTCTAGCTTGAAAAACCCCCATCTCGAAAAATTGGCAATATCTCAAAAACGGTGGTAGCTATCAAAATTGTTTCAATTATAAAATCACTCAGCATATAATTTTTCACATTTTTCAAGTTTTCAGTTTTTCCTAACAACAGTAATTTTGAGCTGATATGCGCCTTTAAAAATAGAATCTTCAAATACAATACCTCCG</canonical_amplicon>
		<polymorphic_amplicon>GTATGTAAATTTGGTTTGGTTTGAAGAGAGAGAGAGAGAGAGAGAGAATGGAAAAGGTGTTATCTCTTTCAGTGTTTGCACAAAATTGGAACTACAGTAATTCAGAAATTTTGAAAAAATTGAGCTAGAAACGCMCACAAATTTCTAGCTTGAAAAACCCCCATCTCGAAAAATTGGCAATATCTCAAAAACGGTGGTAGCTATCAAAATTGTTTCAATTATAAAATCACTCAGCATATAATTTTTCACATTTTTCAAGTTTTCAGTTTTTCCTAACAACAGTAATTTTGAGCTGATATGCGCCTTTAAAAATAGAATCTTCAAATACAATACCTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29488</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>118926</contig_pos>
        <strand></strand>
        <context>aaattttatg[C/T]tgagcaattt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACGGTAGATAGAAAAAGATGTAAACTACAAAAATATGTAAAATTTTATG</left_flank>
        <right_flank>TGAGCAATTTAATAGCTGACAGTTTTTTGATAGCTTTTTTTGTTCTTGAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGTTCTCAAAAAACCTCTCGTCTCTCTCCTCACTTCTCTCCAAAATGATCATCAAATTTTCCGGGCAATGATATAGAGAGAAAGATCGATTGGAGTAGAAATTGCATCATCAATGTAAGCCCTGTAGAAGAATCTACAGTAATTCAAAAATAGTATTTTCAGACAATATATATATATATATATGTTTGTATCAAAAAAAGCACAAAGGATGGTAAACATGATTTTTCGGCTGACAAGAAGAATTTTTTTATAGTTATTGAACTATTTTTCAATGAAACAATGAATTAGTTCATCAATTTTTTTTTGTTTTTTAAGTGTAAAATTTTATGCTGAGCAATTCATCCGTTAACAACTTTTTAATAGCTTTCTTGGCTTTTGAGATAAGCGCCTTAAAAGAGACGCAGGCACTAGGGCAGCTGCGTTTTCAAAGGCGCATATCTCAAAAACTACGGTAGATAGAAAAAGATGTAAACTACAAAAATATGTAAAATTTTATGCTGAGCAATTTAATAGCTGACAGTTTTTTGATAGCTTTTTTTGTTCTTGAGATATGAGCGTTTGAAAAAGAAAGCATCCAATTTCTCTCGAAAACTATGTTTTTAGCTTGAAAAGTATAGCTAGCTTTTGCCGCGTGATTTTACTCAAAAAATCCTTTTTTTCAGCCTTGTTAAAAAATATTTTTCTCGTGAATCCCCAATCGCCCGGTTATTCAATTAACAAAAAACCCAATTTATCAATTCAAGCCAATCAAAATAGAAATCAGTTCTAATAAATGTTCATCTAAATGTTCATTCATCTCGATTCTCCACTGGATTCTCCTAACTATGTTTTTTCCTTGTTAAGTATGCTTTCAAATTACAAGTGAGTTTGATTTTGAGAAAAAAAAAGATTTTCATTAAAATTTTTTCTGATTTCAGACAATCGCAACTAATCTTCTTCTAAACATTGGAGTTCTGCTTTTGTGTCCTTAAAAAATCGTCACAACCCTTTCTAATTTT</canonical>
            <polymorphic>TCAGTTCTCAAAAAACCTCTCGTCTCTCTCCTCACTTCTCTCCAAAATGATCATCAAATTTTCCGGGCAATGATATAGAGAGAAAGATCGATTGGAGTAGAAATTGCATCATCAATGTAAGCCCTGTAGAAGAATCTACAGTAATTCAAAAATAGTATTTTCAGACAATATATATATATATATATGTTTGTATCAAAAAAAGCACAAAGGATGGTAAACATGATTTTTCGGCTGACAAGAAGAATTTTTTTATAGTTATTGAACTATTTTTCAATGAAACAATGAATTAGTTCATCAATTTTTTTTTGTTTTTTAAGTGTAAAATTTTATGCTGAGCAATTCATCCGTTAACAACTTTTTAATAGCTTTCTTGGCTTTTGAGATAAGCGCCTTAAAAGAGACGCAGGCACTAGGGCAGCTGCGTTTTCAAAGGCGCATATCTCAAAAACTACGGTAGATAGAAAAAGATGTAAACTACAAAAATATGTAAAATTTTATGYTGAGCAATTTAATAGCTGACAGTTTTTTGATAGCTTTTTTTGTTCTTGAGATATGAGCGTTTGAAAAAGAAAGCATCCAATTTCTCTCGAAAACTATGTTTTTAGCTTGAAAAGTATAGCTAGCTTTTGCCGCGTGATTTTACTCAAAAAATCCTTTTTTTCAGCCTTGTTAAAAAATATTTTTCTCGTGAATCCCCAATCGCCCGGTTATTCAATTAACAAAAAACCCAATTTATCAATTCAAGCCAATCAAAATAGAAATCAGTTCTAATAAATGTTCATCTAAATGTTCATTCATCTCGATTCTCCACTGGATTCTCCTAACTATGTTTTTTCCTTGTTAAGTATGCTTTCAAATTACAAGTGAGTTTGATTTTGAGAAAAAAAAAGATTTTCATTAAAATTTTTTCTGATTTCAGACAATCGCAACTAATCTTCTTCTAAACATTGGAGTTCTGCTTTTGTGTCCTTAAAAAATCGTCACAACCCTTTCTAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCTNAGC</site>
                <isoschizomers>
                    <enzyme>BlpI</enzyme>
                    <enzyme>Bpu1102I</enzyme>
                    <enzyme>Bsp1720I</enzyme>
                    <enzyme>CelII</enzyme>
                    <enzyme>EspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 332 168</canonical_bands>
                <polymorphic_bands>668 332</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 332 168</canonical_bands>
                <polymorphic_bands>668 332</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACAAAGGATGGTAAACATGA</pcr_primer_p1>
		<pcr_primer_p2>AGCTAGCTATACTTTTCAAGCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>423</pcr_amplicon_size>
		<canonical_amplicon>CACAAAGGATGGTAAACATGATTTTTCGGCTGACAAGAAGAATTTTTTTATAGTTATTGAACTATTTTTCAATGAAACAATGAATTAGTTCATCAATTTTTTTTTGTTTTTTAAGTGTAAAATTTTATGCTGAGCAATTCATCCGTTAACAACTTTTTAATAGCTTTCTTGGCTTTTGAGATAAGCGCCTTAAAAGAGACGCAGGCACTAGGGCAGCTGCGTTTTCAAAGGCGCATATCTCAAAAACTACGGTAGATAGAAAAAGATGTAAACTACAAAAATATGTAAAATTTTATGCTGAGCAATTTAATAGCTGACAGTTTTTTGATAGCTTTTTTTGTTCTTGAGATATGAGCGTTTGAAAAAGAAAGCATCCAATTTCTCTCGAAAACTATGTTTTTAGCTTGAAAAGTATAGCTAGCT</canonical_amplicon>
		<polymorphic_amplicon>CACAAAGGATGGTAAACATGATTTTTCGGCTGACAAGAAGAATTTTTTTATAGTTATTGAACTATTTTTCAATGAAACAATGAATTAGTTCATCAATTTTTTTTTGTTTTTTAAGTGTAAAATTTTATGCTGAGCAATTCATCCGTTAACAACTTTTTAATAGCTTTCTTGGCTTTTGAGATAAGCGCCTTAAAAGAGACGCAGGCACTAGGGCAGCTGCGTTTTCAAAGGCGCATATCTCAAAAACTACGGTAGATAGAAAAAGATGTAAACTACAAAAATATGTAAAATTTTATGYTGAGCAATTTAATAGCTGACAGTTTTTTGATAGCTTTTTTTGTTCTTGAGATATGAGCGTTTGAAAAAGAAAGCATCCAATTTCTCTCGAAAACTATGTTTTTAGCTTGAAAAGTATAGCTAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29489</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>118942</contig_pos>
        <strand></strand>
        <context>aatttaatag[C/T]tgacagtttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGATGTAAACTACAAAAATATGTAAAATTTTATGCTGAGCAATTTAATAG</left_flank>
        <right_flank>TGACAGTTTTTTGATAGCTTTTTTTGTTCTTGAGATATGAGCGTTTGAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTCGTCTCTCTCCTCACTTCTCTCCAAAATGATCATCAAATTTTCCGGGCAATGATATAGAGAGAAAGATCGATTGGAGTAGAAATTGCATCATCAATGTAAGCCCTGTAGAAGAATCTACAGTAATTCAAAAATAGTATTTTCAGACAATATATATATATATATATGTTTGTATCAAAAAAAGCACAAAGGATGGTAAACATGATTTTTCGGCTGACAAGAAGAATTTTTTTATAGTTATTGAACTATTTTTCAATGAAACAATGAATTAGTTCATCAATTTTTTTTTGTTTTTTAAGTGTAAAATTTTATGCTGAGCAATTCATCCGTTAACAACTTTTTAATAGCTTTCTTGGCTTTTGAGATAAGCGCCTTAAAAGAGACGCAGGCACTAGGGCAGCTGCGTTTTCAAAGGCGCATATCTCAAAAACTACGGTAGATAGAAAAAGATGTAAACTACAAAAATATGTAAAATTTTATGCTGAGCAATTTAATAGCTGACAGTTTTTTGATAGCTTTTTTTGTTCTTGAGATATGAGCGTTTGAAAAAGAAAGCATCCAATTTCTCTCGAAAACTATGTTTTTAGCTTGAAAAGTATAGCTAGCTTTTGCCGCGTGATTTTACTCAAAAAATCCTTTTTTTCAGCCTTGTTAAAAAATATTTTTCTCGTGAATCCCCAATCGCCCGGTTATTCAATTAACAAAAAACCCAATTTATCAATTCAAGCCAATCAAAATAGAAATCAGTTCTAATAAATGTTCATCTAAATGTTCATTCATCTCGATTCTCCACTGGATTCTCCTAACTATGTTTTTTCCTTGTTAAGTATGCTTTCAAATTACAAGTGAGTTTGATTTTGAGAAAAAAAAAGATTTTCATTAAAATTTTTTCTGATTTCAGACAATCGCAACTAATCTTCTTCTAAACATTGGAGTTCTGCTTTTGTGTCCTTAAAAAATCGTCACAACCCTTTCTAATTTTTATTGAATAATAAAAT</canonical>
            <polymorphic>CTCTCGTCTCTCTCCTCACTTCTCTCCAAAATGATCATCAAATTTTCCGGGCAATGATATAGAGAGAAAGATCGATTGGAGTAGAAATTGCATCATCAATGTAAGCCCTGTAGAAGAATCTACAGTAATTCAAAAATAGTATTTTCAGACAATATATATATATATATATGTTTGTATCAAAAAAAGCACAAAGGATGGTAAACATGATTTTTCGGCTGACAAGAAGAATTTTTTTATAGTTATTGAACTATTTTTCAATGAAACAATGAATTAGTTCATCAATTTTTTTTTGTTTTTTAAGTGTAAAATTTTATGCTGAGCAATTCATCCGTTAACAACTTTTTAATAGCTTTCTTGGCTTTTGAGATAAGCGCCTTAAAAGAGACGCAGGCACTAGGGCAGCTGCGTTTTCAAAGGCGCATATCTCAAAAACTACGGTAGATAGAAAAAGATGTAAACTACAAAAATATGTAAAATTTTATGCTGAGCAATTTAATAGYTGACAGTTTTTTGATAGCTTTTTTTGTTCTTGAGATATGAGCGTTTGAAAAAGAAAGCATCCAATTTCTCTCGAAAACTATGTTTTTAGCTTGAAAAGTATAGCTAGCTTTTGCCGCGTGATTTTACTCAAAAAATCCTTTTTTTCAGCCTTGTTAAAAAATATTTTTCTCGTGAATCCCCAATCGCCCGGTTATTCAATTAACAAAAAACCCAATTTATCAATTCAAGCCAATCAAAATAGAAATCAGTTCTAATAAATGTTCATCTAAATGTTCATTCATCTCGATTCTCCACTGGATTCTCCTAACTATGTTTTTTCCTTGTTAAGTATGCTTTCAAATTACAAGTGAGTTTGATTTTGAGAAAAAAAAAGATTTTCATTAAAATTTTTTCTGATTTCAGACAATCGCAACTAATCTTCTTCTAAACATTGGAGTTCTGCTTTTGTGTCCTTAAAAAATCGTCACAACCCTTTCTAATTTTTATTGAATAATAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>393 349 97 72 53 18 14 4</canonical_bands>
                <polymorphic_bands>393 349 115 72 53 14 4</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>271 134 110 105 97 81 72 44 41 18 14 9 4</canonical_bands>
                <polymorphic_bands>271 134 115 110 105 81 72 44 41 14 9 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACAAAGGATGGTAAACATGA</pcr_primer_p1>
		<pcr_primer_p2>AGCTAGCTATACTTTTCAAGCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>423</pcr_amplicon_size>
		<canonical_amplicon>CACAAAGGATGGTAAACATGATTTTTCGGCTGACAAGAAGAATTTTTTTATAGTTATTGAACTATTTTTCAATGAAACAATGAATTAGTTCATCAATTTTTTTTTGTTTTTTAAGTGTAAAATTTTATGCTGAGCAATTCATCCGTTAACAACTTTTTAATAGCTTTCTTGGCTTTTGAGATAAGCGCCTTAAAAGAGACGCAGGCACTAGGGCAGCTGCGTTTTCAAAGGCGCATATCTCAAAAACTACGGTAGATAGAAAAAGATGTAAACTACAAAAATATGTAAAATTTTATGCTGAGCAATTTAATAGCTGACAGTTTTTTGATAGCTTTTTTTGTTCTTGAGATATGAGCGTTTGAAAAAGAAAGCATCCAATTTCTCTCGAAAACTATGTTTTTAGCTTGAAAAGTATAGCTAGCT</canonical_amplicon>
		<polymorphic_amplicon>CACAAAGGATGGTAAACATGATTTTTCGGCTGACAAGAAGAATTTTTTTATAGTTATTGAACTATTTTTCAATGAAACAATGAATTAGTTCATCAATTTTTTTTTGTTTTTTAAGTGTAAAATTTTATGCTGAGCAATTCATCCGTTAACAACTTTTTAATAGCTTTCTTGGCTTTTGAGATAAGCGCCTTAAAAGAGACGCAGGCACTAGGGCAGCTGCGTTTTCAAAGGCGCATATCTCAAAAACTACGGTAGATAGAAAAAGATGTAAACTACAAAAATATGTAAAATTTTATGCTGAGCAATTTAATAGYTGACAGTTTTTTGATAGCTTTTTTTGTTCTTGAGATATGAGCGTTTGAAAAAGAAAGCATCCAATTTCTCTCGAAAACTATGTTTTTAGCTTGAAAAGTATAGCTAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29490</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>120264</contig_pos>
        <strand>+</strand>
        <context>gaaaagttTC[A/T]TTTTTTTWAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCTGATAGCTATCACCGTTGTTGAGATATGAGCGTTCGGAAAAGTTTC</left_flank>
        <right_flank>TTTTTTTAAATTTCTAGCTTCAAGACTTGAAATATGTTATCTAATTTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATACGGTAGCTGGAAAAAAGTTGTAAAGTACAAAACTATGTGAAATTTTATGCTGAGTAATTTACCAGTTGACAACTTTTTGATAGCTTCCTTGGTTCTTGAGATATGAGCAATCGCCGACAACAAGGCCACTTGCCCATCTTGTTATCTATGTCCCCCCGCCTACTTTGAAGAGGCATATCTTGAGAACTACGGTAGCTGGGAAAAAGTTGTAAAGTATGAAAATATGTAAAATCTTCTAATGAGCAATTTAATAGTTAACAATTTTTTGATAGCTTTTGTGGTTCTTGAAATATGAGCGACCGCCACAAACAGGCCGTTTCAGTCGTGCATCTACTCCTCCAGCAAACTTTAAAGGCGCATAGCTAAAAAACTACAGTAGCTGAAAAAAGTTGTAAAATACAAAAATGTGTAAAATTTTAAATTGAGCAATTTAGTAGTTAGCAATTTTCTGATAGCTATCACCGTTGTTGAGATATGAGCGTTCGGAAAAGTTTCCTTTTTTTAAATTTCTAGCTTCAAGACTTGAAATATGTTATCTAATTTTTGCCACGTGGATTTCTATTACTGTGGTTTTTTTTTCGTTTTTAGAAACTTCCCTCAGCAATCCCCACGTGACACCCCAACCCTATTAACCATATTTTCTGAAAAAAAGAGCAGAAAAATCAACATGACTCTCCGAGAATTCCAAAAACTTCTCAATTTGTTTGATCTATAGACTATAACAGATCAAATGTCTCTTCCTACTCTTTCCTAAATTTCAAAAAAATTTGTTTTGAAAAACTGTAAGCTTTTTCAATGGAGCGTACTTTCACTACATCATAAATTTTAAATTTCAGGCTAATACCAAAGAGTCGAAAACAAATAAAATGCGGATGTAACAAATGGATTTTGATCTACTCAATTGCTTCGATTTGAATGGAAAACCATCGATTTTTCTACTTGATTCTTTTGTGCTGAATAAATATATTTTTTGTATTTTTCGTAAAAAAATTCATC</canonical>
            <polymorphic>AATACGGTAGCTGGAAAAAAGTTGTAAAGTACAAAACTATGTGAAATTTTATGCTGAGTAATTTACCAGTTGACAACTTTTTGATAGCTTCCTTGGTTCTTGAGATATGAGCAATCGCCGACAACAAGGCCACTTGCCCATCTTGTTATCTATGTCCCCCCGCCTACTTTGAAGAGGCATATCTTGAGAACTACGGTAGCTGGGAAAAAGTTGTAAAGTATGAAAATATGTAAAATCTTCTAATGAGCAATTTAATAGTTAACAATTTTTTGATAGCTTTTGTGGTTCTTGAAATATGAGCGACCGCCACAAACAGGCCGTTTCAGTCGTGCATCTACTCCTCCAGCAAACTTTAAAGGCGCATAGCTAAAAAACTACAGTAGCTGAAAAAAGTTGTAAAATACAAAAATGTGTAAAATTTTAAATTGAGCAATTTAGTAGTTAGCAATTTTCTGATAGCTATCACCGTTGTTGAGATATGAGCGTTCGGAAAAGTTTCWTTTTTTTAAATTTCTAGCTTCAAGACTTGAAATATGTTATCTAATTTTTGCCACGTGGATTTCTATTACTGTGGTTTTTTTTTCGTTTTTAGAAACTTCCCTCAGCAATCCCCACGTGACACCCCAACCCTATTAACCATATTTTCTGAAAAAAAGAGCAGAAAAATCAACATGACTCTCCGAGAATTCCAAAAACTTCTCAATTTGTTTGATCTATAGACTATAACAGATCAAATGTCTCTTCCTACTCTTTCCTAAATTTCAAAAAAATTTGTTTTGAAAAACTGTAAGCTTTTTCAATGGAGCGTACTTTCACTACATCATAAATTTTAAATTTCAGGCTAATACCAAAGAGTCGAAAACAAATAAAATGCGGATGTAACAAATGGATTTTGATCTACTCAATTGCTTCGATTTGAATGGAAAACCATCGATTTTTCTACTTGATTCTTTTGTGCTGAATAAATATATTTTTTGTATTTTTCGTAAAAAAATTCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGACAAAAATACAATTTAGTTTCAC</pcr_primer_p1>
		<pcr_primer_p2>CGTGGCAAAAATTAGATAACATA</pcr_primer_p2>
		<pcr_amplicon_size>791</pcr_amplicon_size>
		<canonical_amplicon>CCTTTTTTTAAATTTCTAGCTTCAAGACTTGAAATATGTTATCTAATTTTTGCCACG</canonical_amplicon>
		<polymorphic_amplicon>CWTTTTTTTAAATTTCTAGCTTCAAGACTTGAAATATGTTATCTAATTTTTGCCACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29491</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>120272</contig_pos>
        <strand></strand>
        <context>TCWTTTTTTT[A/T]AATTTCTAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGCTATCACCGTTGTTGAGATATGAGCGTTCGGAAAAGTTTCCTTTTTTT</left_flank>
        <right_flank>AATTTCTAGCTTCAAGACTTGAAATATGTTATCTAATTTTTGCCACGTGG</right_flank>
        <qual_score>33</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTGGAAAAAAGTTGTAAAGTACAAAACTATGTGAAATTTTATGCTGAGTAATTTACCAGTTGACAACTTTTTGATAGCTTCCTTGGTTCTTGAGATATGAGCAATCGCCGACAACAAGGCCACTTGCCCATCTTGTTATCTATGTCCCCCCGCCTACTTTGAAGAGGCATATCTTGAGAACTACGGTAGCTGGGAAAAAGTTGTAAAGTATGAAAATATGTAAAATCTTCTAATGAGCAATTTAATAGTTAACAATTTTTTGATAGCTTTTGTGGTTCTTGAAATATGAGCGACCGCCACAAACAGGCCGTTTCAGTCGTGCATCTACTCCTCCAGCAAACTTTAAAGGCGCATAGCTAAAAAACTACAGTAGCTGAAAAAAGTTGTAAAATACAAAAATGTGTAAAATTTTAAATTGAGCAATTTAGTAGTTAGCAATTTTCTGATAGCTATCACCGTTGTTGAGATATGAGCGTTCGGAAAAGTTTCCTTTTTTTAAATTTCTAGCTTCAAGACTTGAAATATGTTATCTAATTTTTGCCACGTGGATTTCTATTACTGTGGTTTTTTTTTCGTTTTTAGAAACTTCCCTCAGCAATCCCCACGTGACACCCCAACCCTATTAACCATATTTTCTGAAAAAAAGAGCAGAAAAATCAACATGACTCTCCGAGAATTCCAAAAACTTCTCAATTTGTTTGATCTATAGACTATAACAGATCAAATGTCTCTTCCTACTCTTTCCTAAATTTCAAAAAAATTTGTTTTGAAAAACTGTAAGCTTTTTCAATGGAGCGTACTTTCACTACATCATAAATTTTAAATTTCAGGCTAATACCAAAGAGTCGAAAACAAATAAAATGCGGATGTAACAAATGGATTTTGATCTACTCAATTGCTTCGATTTGAATGGAAAACCATCGATTTTTCTACTTGATTCTTTTGTGCTGAATAAATATATTTTTTGTATTTTTCGTAAAAAAATTCATCTTCAATCT</canonical>
            <polymorphic>AGCTGGAAAAAAGTTGTAAAGTACAAAACTATGTGAAATTTTATGCTGAGTAATTTACCAGTTGACAACTTTTTGATAGCTTCCTTGGTTCTTGAGATATGAGCAATCGCCGACAACAAGGCCACTTGCCCATCTTGTTATCTATGTCCCCCCGCCTACTTTGAAGAGGCATATCTTGAGAACTACGGTAGCTGGGAAAAAGTTGTAAAGTATGAAAATATGTAAAATCTTCTAATGAGCAATTTAATAGTTAACAATTTTTTGATAGCTTTTGTGGTTCTTGAAATATGAGCGACCGCCACAAACAGGCCGTTTCAGTCGTGCATCTACTCCTCCAGCAAACTTTAAAGGCGCATAGCTAAAAAACTACAGTAGCTGAAAAAAGTTGTAAAATACAAAAATGTGTAAAATTTTAAATTGAGCAATTTAGTAGTTAGCAATTTTCTGATAGCTATCACCGTTGTTGAGATATGAGCGTTCGGAAAAGTTTCCTTTTTTTWAATTTCTAGCTTCAAGACTTGAAATATGTTATCTAATTTTTGCCACGTGGATTTCTATTACTGTGGTTTTTTTTTCGTTTTTAGAAACTTCCCTCAGCAATCCCCACGTGACACCCCAACCCTATTAACCATATTTTCTGAAAAAAAGAGCAGAAAAATCAACATGACTCTCCGAGAATTCCAAAAACTTCTCAATTTGTTTGATCTATAGACTATAACAGATCAAATGTCTCTTCCTACTCTTTCCTAAATTTCAAAAAAATTTGTTTTGAAAAACTGTAAGCTTTTTCAATGGAGCGTACTTTCACTACATCATAAATTTTAAATTTCAGGCTAATACCAAAGAGTCGAAAACAAATAAAATGCGGATGTAACAAATGGATTTTGATCTACTCAATTGCTTCGATTTGAATGGAAAACCATCGATTTTTCTACTTGATTCTTTTGTGCTGAATAAATATATTTTTTGTATTTTTCGTAAAAAAATTCATCTTCAATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>372 176 160 92 73 57 36 16 11 7</canonical_bands>
                <polymorphic_bands>372 268 160 73 57 36 16 11 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>346 324 177 85 68</canonical_bands>
                <polymorphic_bands>409 346 177 68</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>244 197 178 127 94 85 68 7</canonical_bands>
                <polymorphic_bands>244 212 197 178 94 68 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGACAAAAATACAATTTAGTTTCAC</pcr_primer_p1>
		<pcr_primer_p2>GTTAATAGGGTTGGGGTGTC</pcr_primer_p2>
		<pcr_amplicon_size>873</pcr_amplicon_size>
		<canonical_amplicon>TAAATTTCTAGCTTCAAGACTTGAAATATGTTATCTAATTTTTGCCACGTGGATTTCTATTACTGTGGTTTTTTTTTCGTTTTTAGAAACTTCCCTCAGCAATCCCCACGTGACACCCCAACCCTATTAAC</canonical_amplicon>
		<polymorphic_amplicon>TWAATTTCTAGCTTCAAGACTTGAAATATGTTATCTAATTTTTGCCACGTGGATTTCTATTACTGTGGTTTTTTTTTCGTTTTTAGAAACTTCCCTCAGCAATCCCCACGTGACACCCCAACCCTATTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29492</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>120339</contig_pos>
        <strand>+</strand>
        <context>ATTACTGTGG[C/T]TTTTTTTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTTGAAATATGTTATCTAATTTTTGCCACGTGGATTTCTATTACTGTGG</left_flank>
        <right_flank>TTTTTTTTCGTTTTTAGAAACTTCCCTCAGCAATCCCCACGTGACACCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTTTGATAGCTTCCTTGGTTCTTGAGATATGAGCAATCGCCGACAACAAGGCCACTTGCCCATCTTGTTATCTATGTCCCCCCGCCTACTTTGAAGAGGCATATCTTGAGAACTACGGTAGCTGGGAAAAAGTTGTAAAGTATGAAAATATGTAAAATCTTCTAATGAGCAATTTAATAGTTAACAATTTTTTGATAGCTTTTGTGGTTCTTGAAATATGAGCGACCGCCACAAACAGGCCGTTTCAGTCGTGCATCTACTCCTCCAGCAAACTTTAAAGGCGCATAGCTAAAAAACTACAGTAGCTGAAAAAAGTTGTAAAATACAAAAATGTGTAAAATTTTAAATTGAGCAATTTAGTAGTTAGCAATTTTCTGATAGCTATCACCGTTGTTGAGATATGAGCGTTCGGAAAAGTTTCCTTTTTTTAAATTTCTAGCTTCAAGACTTGAAATATGTTATCTAATTTTTGCCACGTGGATTTCTATTACTGTGGTTTTTTTTTCGTTTTTAGAAACTTCCCTCAGCAATCCCCACGTGACACCCCAACCCTATTAACCATATTTTCTGAAAAAAAGAGCAGAAAAATCAACATGACTCTCCGAGAATTCCAAAAACTTCTCAATTTGTTTGATCTATAGACTATAACAGATCAAATGTCTCTTCCTACTCTTTCCTAAATTTCAAAAAAATTTGTTTTGAAAAACTGTAAGCTTTTTCAATGGAGCGTACTTTCACTACATCATAAATTTTAAATTTCAGGCTAATACCAAAGAGTCGAAAACAAATAAAATGCGGATGTAACAAATGGATTTTGATCTACTCAATTGCTTCGATTTGAATGGAAAACCATCGATTTTTCTACTTGATTCTTTTGTGCTGAATAAATATATTTTTTGTATTTTTCGTAAAAAAATTCATCTTCAATCTCATAGTTCACTAAATTTCGATCCTTAGCCAGCCGGCTGAGCGGCGGCTGAAAAACGGCTGCCACGTT</canonical>
            <polymorphic>ACTTTTTGATAGCTTCCTTGGTTCTTGAGATATGAGCAATCGCCGACAACAAGGCCACTTGCCCATCTTGTTATCTATGTCCCCCCGCCTACTTTGAAGAGGCATATCTTGAGAACTACGGTAGCTGGGAAAAAGTTGTAAAGTATGAAAATATGTAAAATCTTCTAATGAGCAATTTAATAGTTAACAATTTTTTGATAGCTTTTGTGGTTCTTGAAATATGAGCGACCGCCACAAACAGGCCGTTTCAGTCGTGCATCTACTCCTCCAGCAAACTTTAAAGGCGCATAGCTAAAAAACTACAGTAGCTGAAAAAAGTTGTAAAATACAAAAATGTGTAAAATTTTAAATTGAGCAATTTAGTAGTTAGCAATTTTCTGATAGCTATCACCGTTGTTGAGATATGAGCGTTCGGAAAAGTTTCCTTTTTTTAAATTTCTAGCTTCAAGACTTGAAATATGTTATCTAATTTTTGCCACGTGGATTTCTATTACTGTGGYTTTTTTTTCGTTTTTAGAAACTTCCCTCAGCAATCCCCACGTGACACCCCAACCCTATTAACCATATTTTCTGAAAAAAAGAGCAGAAAAATCAACATGACTCTCCGAGAATTCCAAAAACTTCTCAATTTGTTTGATCTATAGACTATAACAGATCAAATGTCTCTTCCTACTCTTTCCTAAATTTCAAAAAAATTTGTTTTGAAAAACTGTAAGCTTTTTCAATGGAGCGTACTTTCACTACATCATAAATTTTAAATTTCAGGCTAATACCAAAGAGTCGAAAACAAATAAAATGCGGATGTAACAAATGGATTTTGATCTACTCAATTGCTTCGATTTGAATGGAAAACCATCGATTTTTCTACTTGATTCTTTTGTGCTGAATAAATATATTTTTTGTATTTTTCGTAAAAAAATTCATCTTCAATCTCATAGTTCACTAAATTTCGATCCTTAGCCAGCCGGCTGAGCGGCGGCTGAAAAACGGCTGCCACGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGACAAAAATACAATTTAGTTTCAC</pcr_primer_p1>
		<pcr_primer_p2>GTTAATAGGGTTGGGGTGTC</pcr_primer_p2>
		<pcr_amplicon_size>873</pcr_amplicon_size>
		<canonical_amplicon>GTTTTTTTTTCGTTTTTAGAAACTTCCCTCAGCAATCCCCACGTGACACCCCAACCCTATTAAC</canonical_amplicon>
		<polymorphic_amplicon>GYTTTTTTTTCGTTTTTAGAAACTTCCCTCAGCAATCCCCACGTGACACCCCAACCCTATTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29493</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>120362</contig_pos>
        <strand></strand>
        <context>TTTAGAAACT[T/C]CCCTCAGCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTGCCACGTGGATTTCTATTACTGTGGTTTTTTTTTCGTTTTTAGAAACT</left_flank>
        <right_flank>CCCTCAGCAATCCCCACGTGACACCCCAACCCTATTAACCATATTTTCTG</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGAGATATGAGCAATCGCCGACAACAAGGCCACTTGCCCATCTTGTTATCTATGTCCCCCCGCCTACTTTGAAGAGGCATATCTTGAGAACTACGGTAGCTGGGAAAAAGTTGTAAAGTATGAAAATATGTAAAATCTTCTAATGAGCAATTTAATAGTTAACAATTTTTTGATAGCTTTTGTGGTTCTTGAAATATGAGCGACCGCCACAAACAGGCCGTTTCAGTCGTGCATCTACTCCTCCAGCAAACTTTAAAGGCGCATAGCTAAAAAACTACAGTAGCTGAAAAAAGTTGTAAAATACAAAAATGTGTAAAATTTTAAATTGAGCAATTTAGTAGTTAGCAATTTTCTGATAGCTATCACCGTTGTTGAGATATGAGCGTTCGGAAAAGTTTCCTTTTTTTAAATTTCTAGCTTCAAGACTTGAAATATGTTATCTAATTTTTGCCACGTGGATTTCTATTACTGTGGTTTTTTTTTCGTTTTTAGAAACTTCCCTCAGCAATCCCCACGTGACACCCCAACCCTATTAACCATATTTTCTGAAAAAAAGAGCAGAAAAATCAACATGACTCTCCGAGAATTCCAAAAACTTCTCAATTTGTTTGATCTATAGACTATAACAGATCAAATGTCTCTTCCTACTCTTTCCTAAATTTCAAAAAAATTTGTTTTGAAAAACTGTAAGCTTTTTCAATGGAGCGTACTTTCACTACATCATAAATTTTAAATTTCAGGCTAATACCAAAGAGTCGAAAACAAATAAAATGCGGATGTAACAAATGGATTTTGATCTACTCAATTGCTTCGATTTGAATGGAAAACCATCGATTTTTCTACTTGATTCTTTTGTGCTGAATAAATATATTTTTTGTATTTTTCGTAAAAAAATTCATCTTCAATCTCATAGTTCACTAAATTTCGATCCTTAGCCAGCCGGCTGAGCGGCGGCTGAAAAACGGCTGCCACGTTTTTCATCATCTGCGGCTGGACCA</canonical>
            <polymorphic>CTTGAGATATGAGCAATCGCCGACAACAAGGCCACTTGCCCATCTTGTTATCTATGTCCCCCCGCCTACTTTGAAGAGGCATATCTTGAGAACTACGGTAGCTGGGAAAAAGTTGTAAAGTATGAAAATATGTAAAATCTTCTAATGAGCAATTTAATAGTTAACAATTTTTTGATAGCTTTTGTGGTTCTTGAAATATGAGCGACCGCCACAAACAGGCCGTTTCAGTCGTGCATCTACTCCTCCAGCAAACTTTAAAGGCGCATAGCTAAAAAACTACAGTAGCTGAAAAAAGTTGTAAAATACAAAAATGTGTAAAATTTTAAATTGAGCAATTTAGTAGTTAGCAATTTTCTGATAGCTATCACCGTTGTTGAGATATGAGCGTTCGGAAAAGTTTCCTTTTTTTAAATTTCTAGCTTCAAGACTTGAAATATGTTATCTAATTTTTGCCACGTGGATTTCTATTACTGTGGTTTTTTTTTCGTTTTTAGAAACTYCCCTCAGCAATCCCCACGTGACACCCCAACCCTATTAACCATATTTTCTGAAAAAAAGAGCAGAAAAATCAACATGACTCTCCGAGAATTCCAAAAACTTCTCAATTTGTTTGATCTATAGACTATAACAGATCAAATGTCTCTTCCTACTCTTTCCTAAATTTCAAAAAAATTTGTTTTGAAAAACTGTAAGCTTTTTCAATGGAGCGTACTTTCACTACATCATAAATTTTAAATTTCAGGCTAATACCAAAGAGTCGAAAACAAATAAAATGCGGATGTAACAAATGGATTTTGATCTACTCAATTGCTTCGATTTGAATGGAAAACCATCGATTTTTCTACTTGATTCTTTTGTGCTGAATAAATATATTTTTTGTATTTTTCGTAAAAAAATTCATCTTCAATCTCATAGTTCACTAAATTTCGATCCTTAGCCAGCCGGCTGAGCGGCGGCTGAAAAACGGCTGCCACGTTTTTCATCATCTGCGGCTGGACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGACAAAAATACAATTTAGTTTCAC</pcr_primer_p1>
		<pcr_primer_p2>CTCGGAGAGTCATGTTGATT</pcr_primer_p2>
		<pcr_amplicon_size>920</pcr_amplicon_size>
		<canonical_amplicon>TTCCCTCAGCAATCCCCACGTGACACCCCAACCCTATTAACCATATTTTCTGAAAAAAAGAGCAGAAAAATCAACATGACTCTCCGAG</canonical_amplicon>
		<polymorphic_amplicon>TYCCCTCAGCAATCCCCACGTGACACCCCAACCCTATTAACCATATTTTCTGAAAAAAAGAGCAGAAAAATCAACATGACTCTCCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29494</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>120428</contig_pos>
        <strand>+</strand>
        <context>AAGAGCAGAA[A/G]AATCAACATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGTGACACCCCAACCCTATTAACCATATTTTCTGAAAAAAAGAGCAGAA</left_flank>
        <right_flank>AATCAACATGACTCTCCGAGAATTCCAAAAACTTCTCAATTTGTTTGATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTTTGAAGAGGCATATCTTGAGAACTACGGTAGCTGGGAAAAAGTTGTAAAGTATGAAAATATGTAAAATCTTCTAATGAGCAATTTAATAGTTAACAATTTTTTGATAGCTTTTGTGGTTCTTGAAATATGAGCGACCGCCACAAACAGGCCGTTTCAGTCGTGCATCTACTCCTCCAGCAAACTTTAAAGGCGCATAGCTAAAAAACTACAGTAGCTGAAAAAAGTTGTAAAATACAAAAATGTGTAAAATTTTAAATTGAGCAATTTAGTAGTTAGCAATTTTCTGATAGCTATCACCGTTGTTGAGATATGAGCGTTCGGAAAAGTTTCCTTTTTTTAAATTTCTAGCTTCAAGACTTGAAATATGTTATCTAATTTTTGCCACGTGGATTTCTATTACTGTGGTTTTTTTTTCGTTTTTAGAAACTTCCCTCAGCAATCCCCACGTGACACCCCAACCCTATTAACCATATTTTCTGAAAAAAAGAGCAGAAAAATCAACATGACTCTCCGAGAATTCCAAAAACTTCTCAATTTGTTTGATCTATAGACTATAACAGATCAAATGTCTCTTCCTACTCTTTCCTAAATTTCAAAAAAATTTGTTTTGAAAAACTGTAAGCTTTTTCAATGGAGCGTACTTTCACTACATCATAAATTTTAAATTTCAGGCTAATACCAAAGAGTCGAAAACAAATAAAATGCGGATGTAACAAATGGATTTTGATCTACTCAATTGCTTCGATTTGAATGGAAAACCATCGATTTTTCTACTTGATTCTTTTGTGCTGAATAAATATATTTTTTGTATTTTTCGTAAAAAAATTCATCTTCAATCTCATAGTTCACTAAATTTCGATCCTTAGCCAGCCGGCTGAGCGGCGGCTGAAAAACGGCTGCCACGTTTTTCATCATCTGCGGCTGGACCATCTAATAAGCACTCACCCATCATACTTCCCGACATTTACTTTTCCACCGTACTCTTCTACAGTAAC</canonical>
            <polymorphic>TACTTTGAAGAGGCATATCTTGAGAACTACGGTAGCTGGGAAAAAGTTGTAAAGTATGAAAATATGTAAAATCTTCTAATGAGCAATTTAATAGTTAACAATTTTTTGATAGCTTTTGTGGTTCTTGAAATATGAGCGACCGCCACAAACAGGCCGTTTCAGTCGTGCATCTACTCCTCCAGCAAACTTTAAAGGCGCATAGCTAAAAAACTACAGTAGCTGAAAAAAGTTGTAAAATACAAAAATGTGTAAAATTTTAAATTGAGCAATTTAGTAGTTAGCAATTTTCTGATAGCTATCACCGTTGTTGAGATATGAGCGTTCGGAAAAGTTTCCTTTTTTTAAATTTCTAGCTTCAAGACTTGAAATATGTTATCTAATTTTTGCCACGTGGATTTCTATTACTGTGGTTTTTTTTTCGTTTTTAGAAACTTCCCTCAGCAATCCCCACGTGACACCCCAACCCTATTAACCATATTTTCTGAAAAAAAGAGCAGAARAATCAACATGACTCTCCGAGAATTCCAAAAACTTCTCAATTTGTTTGATCTATAGACTATAACAGATCAAATGTCTCTTCCTACTCTTTCCTAAATTTCAAAAAAATTTGTTTTGAAAAACTGTAAGCTTTTTCAATGGAGCGTACTTTCACTACATCATAAATTTTAAATTTCAGGCTAATACCAAAGAGTCGAAAACAAATAAAATGCGGATGTAACAAATGGATTTTGATCTACTCAATTGCTTCGATTTGAATGGAAAACCATCGATTTTTCTACTTGATTCTTTTGTGCTGAATAAATATATTTTTTGTATTTTTCGTAAAAAAATTCATCTTCAATCTCATAGTTCACTAAATTTCGATCCTTAGCCAGCCGGCTGAGCGGCGGCTGAAAAACGGCTGCCACGTTTTTCATCATCTGCGGCTGGACCATCTAATAAGCACTCACCCATCATACTTCCCGACATTTACTTTTCCACCGTACTCTTCTACAGTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACGTGGATTTCTATTACTGTG</pcr_primer_p1>
		<pcr_primer_p2>AGCTTACAGTTTTTCAAAACAAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CACGTGGATTTCTATTACTGTGGTTTTTTTTTCGTTTTTAGAAACTTCCCTCAGCAATCCCCACGTGACACCCCAACCCTATTAACCATATTTTCTGAAAAAAAGAGCAGAAAAATCAACATGACTCTCCGAGAATTCCAAAAACTTCTCAATTTGTTTGATCTATAGACTATAACAGATCAAATGTCTCTTCCTACTCTTTCCTAAATTTCAAAAAAATTTGTTTTGAAAAACTGTAAGCT</canonical_amplicon>
		<polymorphic_amplicon>CACGTGGATTTCTATTACTGTGGTTTTTTTTTCGTTTTTAGAAACTTCCCTCAGCAATCCCCACGTGACACCCCAACCCTATTAACCATATTTTCTGAAAAAAAGAGCAGAARAATCAACATGACTCTCCGAGAATTCCAAAAACTTCTCAATTTGTTTGATCTATAGACTATAACAGATCAAATGTCTCTTCCTACTCTTTCCTAAATTTCAAAAAAATTTGTTTTGAAAAACTGTAAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29495</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>120515</contig_pos>
        <strand>+</strand>
        <context>CTTCCTACTC[C/T]TTYCTAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATTTGTTTGATCTATAGACTATAACAGATCAAATGTCTCTTCCTACTC</left_flank>
        <right_flank>TTCCTAAATTTCAAAAAAATTTGTTTTGAAAAACTGTAAGCTTTTTCAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAATAGTTAACAATTTTTTGATAGCTTTTGTGGTTCTTGAAATATGAGCGACCGCCACAAACAGGCCGTTTCAGTCGTGCATCTACTCCTCCAGCAAACTTTAAAGGCGCATAGCTAAAAAACTACAGTAGCTGAAAAAAGTTGTAAAATACAAAAATGTGTAAAATTTTAAATTGAGCAATTTAGTAGTTAGCAATTTTCTGATAGCTATCACCGTTGTTGAGATATGAGCGTTCGGAAAAGTTTCCTTTTTTTAAATTTCTAGCTTCAAGACTTGAAATATGTTATCTAATTTTTGCCACGTGGATTTCTATTACTGTGGTTTTTTTTTCGTTTTTAGAAACTTCCCTCAGCAATCCCCACGTGACACCCCAACCCTATTAACCATATTTTCTGAAAAAAAGAGCAGAAAAATCAACATGACTCTCCGAGAATTCCAAAAACTTCTCAATTTGTTTGATCTATAGACTATAACAGATCAAATGTCTCTTCCTACTCTTTCCTAAATTTCAAAAAAATTTGTTTTGAAAAACTGTAAGCTTTTTCAATGGAGCGTACTTTCACTACATCATAAATTTTAAATTTCAGGCTAATACCAAAGAGTCGAAAACAAATAAAATGCGGATGTAACAAATGGATTTTGATCTACTCAATTGCTTCGATTTGAATGGAAAACCATCGATTTTTCTACTTGATTCTTTTGTGCTGAATAAATATATTTTTTGTATTTTTCGTAAAAAAATTCATCTTCAATCTCATAGTTCACTAAATTTCGATCCTTAGCCAGCCGGCTGAGCGGCGGCTGAAAAACGGCTGCCACGTTTTTCATCATCTGCGGCTGGACCATCTAATAAGCACTCACCCATCATACTTCCCGACATTTACTTTTCCACCGTACTCTTCTACAGTAACCCATCCTGGGTTTCCATCCAGAATCATGATTTTCGCCTCATCAATTGGCACGCCTTCCAACTCCACATGCGTCAGCTTGACACCATT</canonical>
            <polymorphic>TTAATAGTTAACAATTTTTTGATAGCTTTTGTGGTTCTTGAAATATGAGCGACCGCCACAAACAGGCCGTTTCAGTCGTGCATCTACTCCTCCAGCAAACTTTAAAGGCGCATAGCTAAAAAACTACAGTAGCTGAAAAAAGTTGTAAAATACAAAAATGTGTAAAATTTTAAATTGAGCAATTTAGTAGTTAGCAATTTTCTGATAGCTATCACCGTTGTTGAGATATGAGCGTTCGGAAAAGTTTCCTTTTTTTAAATTTCTAGCTTCAAGACTTGAAATATGTTATCTAATTTTTGCCACGTGGATTTCTATTACTGTGGTTTTTTTTTCGTTTTTAGAAACTTCCCTCAGCAATCCCCACGTGACACCCCAACCCTATTAACCATATTTTCTGAAAAAAAGAGCAGAAAAATCAACATGACTCTCCGAGAATTCCAAAAACTTCTCAATTTGTTTGATCTATAGACTATAACAGATCAAATGTCTCTTCCTACTCYTTCCTAAATTTCAAAAAAATTTGTTTTGAAAAACTGTAAGCTTTTTCAATGGAGCGTACTTTCACTACATCATAAATTTTAAATTTCAGGCTAATACCAAAGAGTCGAAAACAAATAAAATGCGGATGTAACAAATGGATTTTGATCTACTCAATTGCTTCGATTTGAATGGAAAACCATCGATTTTTCTACTTGATTCTTTTGTGCTGAATAAATATATTTTTTGTATTTTTCGTAAAAAAATTCATCTTCAATCTCATAGTTCACTAAATTTCGATCCTTAGCCAGCCGGCTGAGCGGCGGCTGAAAAACGGCTGCCACGTTTTTCATCATCTGCGGCTGGACCATCTAATAAGCACTCACCCATCATACTTCCCGACATTTACTTTTCCACCGTACTCTTCTACAGTAACCCATCCTGGGTTTCCATCCAGAATCATGATTTTCGCCTCATCAATTGGCACGCCTTCCAACTCCACATGCGTCAGCTTGACACCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAACCCTATTAACCATATTTTC</pcr_primer_p1>
		<pcr_primer_p2>CATTTTATTTGTTTTCGACTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAACCCTATTAACCATATTTTCTGAAAAAAAGAGCAGAAAAATCAACATGACTCTCCGAGAATTCCAAAAACTTCTCAATTTGTTTGATCTATAGACTATAACAGATCAAATGTCTCTTCCTACTCTTTCCTAAATTTCAAAAAAATTTGTTTTGAAAAACTGTAAGCTTTTTCAATGGAGCGTACTTTCACTACATCATAAATTTTAAATTTCAGGCTAATACCAAAGAGTCGAAAACAAATAAAATG</canonical_amplicon>
		<polymorphic_amplicon>CCAACCCTATTAACCATATTTTCTGAAAAAAAGAGCAGAAAAATCAACATGACTCTCCGAGAATTCCAAAAACTTCTCAATTTGTTTGATCTATAGACTATAACAGATCAAATGTCTCTTCCTACTCYTTCCTAAATTTCAAAAAAATTTGTTTTGAAAAACTGTAAGCTTTTTCAATGGAGCGTACTTTCACTACATCATAAATTTTAAATTTCAGGCTAATACCAAAGAGTCGAAAACAAATAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29496</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>120518</contig_pos>
        <strand>+</strand>
        <context>CCTACTCYTT[C/T]CTAAATTTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGTTTGATCTATAGACTATAACAGATCAAATGTCTCTTCCTACTCTTT</left_flank>
        <right_flank>CTAAATTTCAAAAAAATTTGTTTTGAAAAACTGTAAGCTTTTTCAATGGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGTTAACAATTTTTTGATAGCTTTTGTGGTTCTTGAAATATGAGCGACCGCCACAAACAGGCCGTTTCAGTCGTGCATCTACTCCTCCAGCAAACTTTAAAGGCGCATAGCTAAAAAACTACAGTAGCTGAAAAAAGTTGTAAAATACAAAAATGTGTAAAATTTTAAATTGAGCAATTTAGTAGTTAGCAATTTTCTGATAGCTATCACCGTTGTTGAGATATGAGCGTTCGGAAAAGTTTCCTTTTTTTAAATTTCTAGCTTCAAGACTTGAAATATGTTATCTAATTTTTGCCACGTGGATTTCTATTACTGTGGTTTTTTTTTCGTTTTTAGAAACTTCCCTCAGCAATCCCCACGTGACACCCCAACCCTATTAACCATATTTTCTGAAAAAAAGAGCAGAAAAATCAACATGACTCTCCGAGAATTCCAAAAACTTCTCAATTTGTTTGATCTATAGACTATAACAGATCAAATGTCTCTTCCTACTCTTTCCTAAATTTCAAAAAAATTTGTTTTGAAAAACTGTAAGCTTTTTCAATGGAGCGTACTTTCACTACATCATAAATTTTAAATTTCAGGCTAATACCAAAGAGTCGAAAACAAATAAAATGCGGATGTAACAAATGGATTTTGATCTACTCAATTGCTTCGATTTGAATGGAAAACCATCGATTTTTCTACTTGATTCTTTTGTGCTGAATAAATATATTTTTTGTATTTTTCGTAAAAAAATTCATCTTCAATCTCATAGTTCACTAAATTTCGATCCTTAGCCAGCCGGCTGAGCGGCGGCTGAAAAACGGCTGCCACGTTTTTCATCATCTGCGGCTGGACCATCTAATAAGCACTCACCCATCATACTTCCCGACATTTACTTTTCCACCGTACTCTTCTACAGTAACCCATCCTGGGTTTCCATCCAGAATCATGATTTTCGCCTCATCAATTGGCACGCCTTCCAACTCCACATGCGTCAGCTTGACACCATTTTC</canonical>
            <polymorphic>ATAGTTAACAATTTTTTGATAGCTTTTGTGGTTCTTGAAATATGAGCGACCGCCACAAACAGGCCGTTTCAGTCGTGCATCTACTCCTCCAGCAAACTTTAAAGGCGCATAGCTAAAAAACTACAGTAGCTGAAAAAAGTTGTAAAATACAAAAATGTGTAAAATTTTAAATTGAGCAATTTAGTAGTTAGCAATTTTCTGATAGCTATCACCGTTGTTGAGATATGAGCGTTCGGAAAAGTTTCCTTTTTTTAAATTTCTAGCTTCAAGACTTGAAATATGTTATCTAATTTTTGCCACGTGGATTTCTATTACTGTGGTTTTTTTTTCGTTTTTAGAAACTTCCCTCAGCAATCCCCACGTGACACCCCAACCCTATTAACCATATTTTCTGAAAAAAAGAGCAGAAAAATCAACATGACTCTCCGAGAATTCCAAAAACTTCTCAATTTGTTTGATCTATAGACTATAACAGATCAAATGTCTCTTCCTACTCTTTYCTAAATTTCAAAAAAATTTGTTTTGAAAAACTGTAAGCTTTTTCAATGGAGCGTACTTTCACTACATCATAAATTTTAAATTTCAGGCTAATACCAAAGAGTCGAAAACAAATAAAATGCGGATGTAACAAATGGATTTTGATCTACTCAATTGCTTCGATTTGAATGGAAAACCATCGATTTTTCTACTTGATTCTTTTGTGCTGAATAAATATATTTTTTGTATTTTTCGTAAAAAAATTCATCTTCAATCTCATAGTTCACTAAATTTCGATCCTTAGCCAGCCGGCTGAGCGGCGGCTGAAAAACGGCTGCCACGTTTTTCATCATCTGCGGCTGGACCATCTAATAAGCACTCACCCATCATACTTCCCGACATTTACTTTTCCACCGTACTCTTCTACAGTAACCCATCCTGGGTTTCCATCCAGAATCATGATTTTCGCCTCATCAATTGGCACGCCTTCCAACTCCACATGCGTCAGCTTGACACCATTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAACCCTATTAACCATATTTTC</pcr_primer_p1>
		<pcr_primer_p2>CATTTTATTTGTTTTCGACTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAACCCTATTAACCATATTTTCTGAAAAAAAGAGCAGAAAAATCAACATGACTCTCCGAGAATTCCAAAAACTTCTCAATTTGTTTGATCTATAGACTATAACAGATCAAATGTCTCTTCCTACTCTTTCCTAAATTTCAAAAAAATTTGTTTTGAAAAACTGTAAGCTTTTTCAATGGAGCGTACTTTCACTACATCATAAATTTTAAATTTCAGGCTAATACCAAAGAGTCGAAAACAAATAAAATG</canonical_amplicon>
		<polymorphic_amplicon>CCAACCCTATTAACCATATTTTCTGAAAAAAAGAGCAGAAAAATCAACATGACTCTCCGAGAATTCCAAAAACTTCTCAATTTGTTTGATCTATAGACTATAACAGATCAAATGTCTCTTCCTACTCTTTYCTAAATTTCAAAAAAATTTGTTTTGAAAAACTGTAAGCTTTTTCAATGGAGCGTACTTTCACTACATCATAAATTTTAAATTTCAGGCTAATACCAAAGAGTCGAAAACAAATAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29497</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>120581</contig_pos>
        <strand>+</strand>
        <context>GTACTTTCAC[C/T]ACAYCATAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATTTGTTTTGAAAAACTGTAAGCTTTTTCAATGGAGCGTACTTTCAC</left_flank>
        <right_flank>ACATCATAAATTTTAAATTTCAGGCTAATACCAAAGAGTCGAAAACAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGTTTCAGTCGTGCATCTACTCCTCCAGCAAACTTTAAAGGCGCATAGCTAAAAAACTACAGTAGCTGAAAAAAGTTGTAAAATACAAAAATGTGTAAAATTTTAAATTGAGCAATTTAGTAGTTAGCAATTTTCTGATAGCTATCACCGTTGTTGAGATATGAGCGTTCGGAAAAGTTTCCTTTTTTTAAATTTCTAGCTTCAAGACTTGAAATATGTTATCTAATTTTTGCCACGTGGATTTCTATTACTGTGGTTTTTTTTTCGTTTTTAGAAACTTCCCTCAGCAATCCCCACGTGACACCCCAACCCTATTAACCATATTTTCTGAAAAAAAGAGCAGAAAAATCAACATGACTCTCCGAGAATTCCAAAAACTTCTCAATTTGTTTGATCTATAGACTATAACAGATCAAATGTCTCTTCCTACTCTTTCCTAAATTTCAAAAAAATTTGTTTTGAAAAACTGTAAGCTTTTTCAATGGAGCGTACTTTCACTACATCATAAATTTTAAATTTCAGGCTAATACCAAAGAGTCGAAAACAAATAAAATGCGGATGTAACAAATGGATTTTGATCTACTCAATTGCTTCGATTTGAATGGAAAACCATCGATTTTTCTACTTGATTCTTTTGTGCTGAATAAATATATTTTTTGTATTTTTCGTAAAAAAATTCATCTTCAATCTCATAGTTCACTAAATTTCGATCCTTAGCCAGCCGGCTGAGCGGCGGCTGAAAAACGGCTGCCACGTTTTTCATCATCTGCGGCTGGACCATCTAATAAGCACTCACCCATCATACTTCCCGACATTTACTTTTCCACCGTACTCTTCTACAGTAACCCATCCTGGGTTTCCATCCAGAATCATGATTTTCGCCTCATCAATTGGCACGCCTTCCAACTCCACATGCGTCAGCTTGACACCATTTTCAATAGTATTGGCATCAATTTCTAAAGAATATTTGGGTTTTCTGAAGTGAGCATGAGACTGAGA</canonical>
            <polymorphic>CCGTTTCAGTCGTGCATCTACTCCTCCAGCAAACTTTAAAGGCGCATAGCTAAAAAACTACAGTAGCTGAAAAAAGTTGTAAAATACAAAAATGTGTAAAATTTTAAATTGAGCAATTTAGTAGTTAGCAATTTTCTGATAGCTATCACCGTTGTTGAGATATGAGCGTTCGGAAAAGTTTCCTTTTTTTAAATTTCTAGCTTCAAGACTTGAAATATGTTATCTAATTTTTGCCACGTGGATTTCTATTACTGTGGTTTTTTTTTCGTTTTTAGAAACTTCCCTCAGCAATCCCCACGTGACACCCCAACCCTATTAACCATATTTTCTGAAAAAAAGAGCAGAAAAATCAACATGACTCTCCGAGAATTCCAAAAACTTCTCAATTTGTTTGATCTATAGACTATAACAGATCAAATGTCTCTTCCTACTCTTTCCTAAATTTCAAAAAAATTTGTTTTGAAAAACTGTAAGCTTTTTCAATGGAGCGTACTTTCACYACATCATAAATTTTAAATTTCAGGCTAATACCAAAGAGTCGAAAACAAATAAAATGCGGATGTAACAAATGGATTTTGATCTACTCAATTGCTTCGATTTGAATGGAAAACCATCGATTTTTCTACTTGATTCTTTTGTGCTGAATAAATATATTTTTTGTATTTTTCGTAAAAAAATTCATCTTCAATCTCATAGTTCACTAAATTTCGATCCTTAGCCAGCCGGCTGAGCGGCGGCTGAAAAACGGCTGCCACGTTTTTCATCATCTGCGGCTGGACCATCTAATAAGCACTCACCCATCATACTTCCCGACATTTACTTTTCCACCGTACTCTTCTACAGTAACCCATCCTGGGTTTCCATCCAGAATCATGATTTTCGCCTCATCAATTGGCACGCCTTCCAACTCCACATGCGTCAGCTTGACACCATTTTCAATAGTATTGGCATCAATTTCTAAAGAATATTTGGGTTTTCTGAAGTGAGCATGAGACTGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAACCCTATTAACCATATTTTC</pcr_primer_p1>
		<pcr_primer_p2>CATTTTATTTGTTTTCGACTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAACCCTATTAACCATATTTTCTGAAAAAAAGAGCAGAAAAATCAACATGACTCTCCGAGAATTCCAAAAACTTCTCAATTTGTTTGATCTATAGACTATAACAGATCAAATGTCTCTTCCTACTCTTTCCTAAATTTCAAAAAAATTTGTTTTGAAAAACTGTAAGCTTTTTCAATGGAGCGTACTTTCACTACATCATAAATTTTAAATTTCAGGCTAATACCAAAGAGTCGAAAACAAATAAAATG</canonical_amplicon>
		<polymorphic_amplicon>CCAACCCTATTAACCATATTTTCTGAAAAAAAGAGCAGAAAAATCAACATGACTCTCCGAGAATTCCAAAAACTTCTCAATTTGTTTGATCTATAGACTATAACAGATCAAATGTCTCTTCCTACTCTTTCCTAAATTTCAAAAAAATTTGTTTTGAAAAACTGTAAGCTTTTTCAATGGAGCGTACTTTCACYACATCATAAATTTTAAATTTCAGGCTAATACCAAAGAGTCGAAAACAAATAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29498</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>120585</contig_pos>
        <strand>+</strand>
        <context>TTTCACYACA[C/T]CATAAATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGTTTTGAAAAACTGTAAGCTTTTTCAATGGAGCGTACTTTCACTACA</left_flank>
        <right_flank>CATAAATTTTAAATTTCAGGCTAATACCAAAGAGTCGAAAACAAATAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAGTCGTGCATCTACTCCTCCAGCAAACTTTAAAGGCGCATAGCTAAAAAACTACAGTAGCTGAAAAAAGTTGTAAAATACAAAAATGTGTAAAATTTTAAATTGAGCAATTTAGTAGTTAGCAATTTTCTGATAGCTATCACCGTTGTTGAGATATGAGCGTTCGGAAAAGTTTCCTTTTTTTAAATTTCTAGCTTCAAGACTTGAAATATGTTATCTAATTTTTGCCACGTGGATTTCTATTACTGTGGTTTTTTTTTCGTTTTTAGAAACTTCCCTCAGCAATCCCCACGTGACACCCCAACCCTATTAACCATATTTTCTGAAAAAAAGAGCAGAAAAATCAACATGACTCTCCGAGAATTCCAAAAACTTCTCAATTTGTTTGATCTATAGACTATAACAGATCAAATGTCTCTTCCTACTCTTTCCTAAATTTCAAAAAAATTTGTTTTGAAAAACTGTAAGCTTTTTCAATGGAGCGTACTTTCACTACATCATAAATTTTAAATTTCAGGCTAATACCAAAGAGTCGAAAACAAATAAAATGCGGATGTAACAAATGGATTTTGATCTACTCAATTGCTTCGATTTGAATGGAAAACCATCGATTTTTCTACTTGATTCTTTTGTGCTGAATAAATATATTTTTTGTATTTTTCGTAAAAAAATTCATCTTCAATCTCATAGTTCACTAAATTTCGATCCTTAGCCAGCCGGCTGAGCGGCGGCTGAAAAACGGCTGCCACGTTTTTCATCATCTGCGGCTGGACCATCTAATAAGCACTCACCCATCATACTTCCCGACATTTACTTTTCCACCGTACTCTTCTACAGTAACCCATCCTGGGTTTCCATCCAGAATCATGATTTTCGCCTCATCAATTGGCACGCCTTCCAACTCCACATGCGTCAGCTTGACACCATTTTCAATAGTATTGGCATCAATTTCTAAAGAATATTTGGGTTTTCTGAAGTGAGCATGAGACTGAGAATTC</canonical>
            <polymorphic>TTCAGTCGTGCATCTACTCCTCCAGCAAACTTTAAAGGCGCATAGCTAAAAAACTACAGTAGCTGAAAAAAGTTGTAAAATACAAAAATGTGTAAAATTTTAAATTGAGCAATTTAGTAGTTAGCAATTTTCTGATAGCTATCACCGTTGTTGAGATATGAGCGTTCGGAAAAGTTTCCTTTTTTTAAATTTCTAGCTTCAAGACTTGAAATATGTTATCTAATTTTTGCCACGTGGATTTCTATTACTGTGGTTTTTTTTTCGTTTTTAGAAACTTCCCTCAGCAATCCCCACGTGACACCCCAACCCTATTAACCATATTTTCTGAAAAAAAGAGCAGAAAAATCAACATGACTCTCCGAGAATTCCAAAAACTTCTCAATTTGTTTGATCTATAGACTATAACAGATCAAATGTCTCTTCCTACTCTTTCCTAAATTTCAAAAAAATTTGTTTTGAAAAACTGTAAGCTTTTTCAATGGAGCGTACTTTCACTACAYCATAAATTTTAAATTTCAGGCTAATACCAAAGAGTCGAAAACAAATAAAATGCGGATGTAACAAATGGATTTTGATCTACTCAATTGCTTCGATTTGAATGGAAAACCATCGATTTTTCTACTTGATTCTTTTGTGCTGAATAAATATATTTTTTGTATTTTTCGTAAAAAAATTCATCTTCAATCTCATAGTTCACTAAATTTCGATCCTTAGCCAGCCGGCTGAGCGGCGGCTGAAAAACGGCTGCCACGTTTTTCATCATCTGCGGCTGGACCATCTAATAAGCACTCACCCATCATACTTCCCGACATTTACTTTTCCACCGTACTCTTCTACAGTAACCCATCCTGGGTTTCCATCCAGAATCATGATTTTCGCCTCATCAATTGGCACGCCTTCCAACTCCACATGCGTCAGCTTGACACCATTTTCAATAGTATTGGCATCAATTTCTAAAGAATATTTGGGTTTTCTGAAGTGAGCATGAGACTGAGAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAGATCAAATGTCTCTTCCTA</pcr_primer_p1>
		<pcr_primer_p2>ATTTATTCAGCACAAAAGAATCA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AACAGATCAAATGTCTCTTCCTACTCTTTCCTAAATTTCAAAAAAATTTGTTTTGAAAAACTGTAAGCTTTTTCAATGGAGCGTACTTTCACTACATCATAAATTTTAAATTTCAGGCTAATACCAAAGAGTCGAAAACAAATAAAATGCGGATGTAACAAATGGATTTTGATCTACTCAATTGCTTCGATTTGAATGGAAAACCATCGATTTTTCTACTTGATTCTTTTGTGCTGAATAAAT</canonical_amplicon>
		<polymorphic_amplicon>AACAGATCAAATGTCTCTTCCTACTCTTTCCTAAATTTCAAAAAAATTTGTTTTGAAAAACTGTAAGCTTTTTCAATGGAGCGTACTTTCACTACAYCATAAATTTTAAATTTCAGGCTAATACCAAAGAGTCGAAAACAAATAAAATGCGGATGTAACAAATGGATTTTGATCTACTCAATTGCTTCGATTTGAATGGAAAACCATCGATTTTTCTACTTGATTCTTTTGTGCTGAATAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29499</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>122125</contig_pos>
        <strand></strand>
        <context>aattttatgt[T/C]gcatattttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTGTAGTTTCAAAAAAGTTGTCAACTACAAAAATATGCAAAATTTTATGT</left_flank>
        <right_flank>GCATATTTTTGTAGTTTACAAAATTTTGATAGCGCTTTTTGTTCTTGAGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTGTGTAGAGCAAAAATGTGTAAAATTTTATGCTTAGCAATTTAATAGTTAACAACTTTCTGAAAGCTTTCTTGTTACTTGACATATGCGCCTTTAAAGAGGTGAAGACTGCGGGGTGGCTAGGCGTCTGGGGATTTTTAAAGATGTATACTTCAAAAAATACGGTAGCTGGAAAAAAGCTAGAGGCTAGAGGCTAGAGGCAAGAGGCTTCTAATGCCCTGAGGCAGGGTGTAATACTTTCCAACAAGTATATCGCAAGAGACAAAAACGATATCAAAAAATTGTCAACTAACGAAATATGTAAAATGCTATGCTGAGTAATTTCATAGTTAACAAATTTTTGATAGCGCATTTGGTTCTCGAGATATAGCAGTTTGTCGACAACAGGATATTTCAGTAGCGCCTCTACTCCGCCCCCAAATTTAAAAAACGGATATCTCGAAAAGTACTGTAGTTTCAAAAAAGTTGTCAACTACAAAAATATGCAAAATTTTATGTTGCATATTTTTGTAGTTTACAAAATTTTGATAGCGCTTTTTGTTCTTGAGACATGCGCCTTTAAAGAGATGCAGACACTATACGGTGTGAGGCGTCTGGGACCCAGTTGTCGGCAACAAGCCACAAGCTCGAGGTCTGAGCTCAAGCTCAAAAGCAAGCTCAATATCAAGCTCAAGATCTTCAGCTCAATCTCTCTCACCTGATACAAGCCCTCCTGAGCCTTCAAAAATCCCAAAAACTTTGTGGCATCTCCGTCCAACTTGATATTCTTCCTCGTTCTCTCCGTTATCACAGCAAACGGACTGATAATTCGATTATCAGAGATTCTGATGACCTTATCAGAAGTCCGAAGACTGGCTTGTTGTTGGACTAGAATCGTCACTTGAACTGGTGCTAATTCTCCATTTTTCGGCATCAAAATCAGTGAAAATGTTTTTTGCGCATCGTCTTGGAGACATTTTTCAGTGTCGAATTGACCGCAAGATAGGATTAAATCATTTC</canonical>
            <polymorphic>GTTGTGTAGAGCAAAAATGTGTAAAATTTTATGCTTAGCAATTTAATAGTTAACAACTTTCTGAAAGCTTTCTTGTTACTTGACATATGCGCCTTTAAAGAGGTGAAGACTGCGGGGTGGCTAGGCGTCTGGGGATTTTTAAAGATGTATACTTCAAAAAATACGGTAGCTGGAAAAAAGCTAGAGGCTAGAGGCTAGAGGCAAGAGGCTTCTAATGCCCTGAGGCAGGGTGTAATACTTTCCAACAAGTATATCGCAAGAGACAAAAACGATATCAAAAAATTGTCAACTAACGAAATATGTAAAATGCTATGCTGAGTAATTTCATAGTTAACAAATTTTTGATAGCGCATTTGGTTCTCGAGATATAGCAGTTTGTCGACAACAGGATATTTCAGTAGCGCCTCTACTCCGCCCCCAAATTTAAAAAACGGATATCTCGAAAAGTACTGTAGTTTCAAAAAAGTTGTCAACTACAAAAATATGCAAAATTTTATGTYGCATATTTTTGTAGTTTACAAAATTTTGATAGCGCTTTTTGTTCTTGAGACATGCGCCTTTAAAGAGATGCAGACACTATACGGTGTGAGGCGTCTGGGACCCAGTTGTCGGCAACAAGCCACAAGCTCGAGGTCTGAGCTCAAGCTCAAAAGCAAGCTCAATATCAAGCTCAAGATCTTCAGCTCAATCTCTCTCACCTGATACAAGCCCTCCTGAGCCTTCAAAAATCCCAAAAACTTTGTGGCATCTCCGTCCAACTTGATATTCTTCCTCGTTCTCTCCGTTATCACAGCAAACGGACTGATAATTCGATTATCAGAGATTCTGATGACCTTATCAGAAGTCCGAAGACTGGCTTGTTGTTGGACTAGAATCGTCACTTGAACTGGTGCTAATTCTCCATTTTTCGGCATCAAAATCAGTGAAAATGTTTTTTGCGCATCGTCTTGGAGACATTTTTCAGTGTCGAATTGACCGCAAGATAGGATTAAATCATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>486 430 69 15</canonical_bands>
                <polymorphic_bands>486 430 84</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGGTGTAATACTTTCCAACAA</pcr_primer_p1>
		<pcr_primer_p2>GATATTGAGCTTGCTTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>440</pcr_amplicon_size>
		<canonical_amplicon>AGGGTGTAATACTTTCCAACAAGTATATCGCAAGAGACAAAAACGATATCAAAAAATTGTCAACTAACGAAATATGTAAAATGCTATGCTGAGTAATTTCATAGTTAACAAATTTTTGATAGCGCATTTGGTTCTCGAGATATAGCAGTTTGTCGACAACAGGATATTTCAGTAGCGCCTCTACTCCGCCCCCAAATTTAAAAAACGGATATCTCGAAAAGTACTGTAGTTTCAAAAAAGTTGTCAACTACAAAAATATGCAAAATTTTATGTTGCATATTTTTGTAGTTTACAAAATTTTGATAGCGCTTTTTGTTCTTGAGACATGCGCCTTTAAAGAGATGCAGACACTATACGGTGTGAGGCGTCTGGGACCCAGTTGTCGGCAACAAGCCACAAGCTCGAGGTCTGAGCTCAAGCTCAAAAGCAAGCTCAATATC</canonical_amplicon>
		<polymorphic_amplicon>AGGGTGTAATACTTTCCAACAAGTATATCGCAAGAGACAAAAACGATATCAAAAAATTGTCAACTAACGAAATATGTAAAATGCTATGCTGAGTAATTTCATAGTTAACAAATTTTTGATAGCGCATTTGGTTCTCGAGATATAGCAGTTTGTCGACAACAGGATATTTCAGTAGCGCCTCTACTCCGCCCCCAAATTTAAAAAACGGATATCTCGAAAAGTACTGTAGTTTCAAAAAAGTTGTCAACTACAAAAATATGCAAAATTTTATGTYGCATATTTTTGTAGTTTACAAAATTTTGATAGCGCTTTTTGTTCTTGAGACATGCGCCTTTAAAGAGATGCAGACACTATACGGTGTGAGGCGTCTGGGACCCAGTTGTCGGCAACAAGCCACAAGCTCGAGGTCTGAGCTCAAGCTCAAAAGCAAGCTCAATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29500</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>123261</contig_pos>
        <strand></strand>
        <context>gttgaccact[C/T]tttgatgtct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGATAAAATGGTTATCAAAATATCAGCAACATTTTATCAGTTGACCACT</left_flank>
        <right_flank>TTTGATGTCTTTCACTGGAACCGAGATATATAGTCTGAAAGTCGCTGGTT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTGAGCTCAATTATCTCGGTTTCTATGAGAGACATCAGAAAGAATTCTATTGATAAAATTGGTATTACCTTATCAGCAAAGTATTATCAGTTGATCACTTTTTGATATCTTTCCCAGGAAAAGAGATATGCAAGATCAAAGTTGAGAGCCCTAAATTCTACATGGAAACTCAAAGTTCTTTTTTTTTTGTTCATCAACTTTGAGCCCATATATCTCGATTCCTGTAGAAAATATCAAAAGATTGTCAACTAATAAAACATTTATCAAAATATCAGCAACATTTTATCAGTTGACCACATTTTGATGTCTTTCACAGGAACCGAGATATATAGCCTCAAAGTTGAGAGTTTTAAATTCTACATGGAAACTCAAAATTCTTTTTTTTTCGTTTATCAACTTTGAGCCCCTATATCTCGCTTTCTGTGAATGGTATCAAGAATGTGAGTACTGATAAAATGGTTATCAAAATATCAGCAACATTTTATCAGTTGACCACTCTTTGATGTCTTTCACTGGAACCGAGATATATAGTCTGAAAGTCGCTGGTTAGGGTGGCCTCCTTCTAGAGAAGTGGGATACGGTAGTCCCTGAATTTCTGCACTATCCACTGTGGCCTACAAACCCATATTTCATGTTTTCTAGTCCACCAACCTTCTATTCCCATTTCCTCCAATAATCTTCAAATCGCCATCCACTTGTCCAATGGTCCGTCCCGACTCCGCGGATTCCATAACTCCAAATTCGACTTCTCTCAACGATAGCATATCAGAGCCCTCCGAAGATTCAGAAGTCGTCTCGAAATTCAATTGGAACGGTGACCGAATCGATGAGTTAGCAAAACGAGCGACAACTTCAAGCTTCTGAATTCTGACGTCTCCTATTTCAGGAATATTCTGAAGGAAGAGAGCAGTCTCTTCTCCAGATAAAATCGAAGCTGGTCGGATTTCTAAAATGCCTTCTGGCTCGATAGAAAGTTGAATTTCCTGTCCCTCGACTCC</canonical>
            <polymorphic>CTTTGAGCTCAATTATCTCGGTTTCTATGAGAGACATCAGAAAGAATTCTATTGATAAAATTGGTATTACCTTATCAGCAAAGTATTATCAGTTGATCACTTTTTGATATCTTTCCCAGGAAAAGAGATATGCAAGATCAAAGTTGAGAGCCCTAAATTCTACATGGAAACTCAAAGTTCTTTTTTTTTTGTTCATCAACTTTGAGCCCATATATCTCGATTCCTGTAGAAAATATCAAAAGATTGTCAACTAATAAAACATTTATCAAAATATCAGCAACATTTTATCAGTTGACCACATTTTGATGTCTTTCACAGGAACCGAGATATATAGCCTCAAAGTTGAGAGTTTTAAATTCTACATGGAAACTCAAAATTCTTTTTTTTTCGTTTATCAACTTTGAGCCCCTATATCTCGCTTTCTGTGAATGGTATCAAGAATGTGAGTACTGATAAAATGGTTATCAAAATATCAGCAACATTTTATCAGTTGACCACTYTTTGATGTCTTTCACTGGAACCGAGATATATAGTCTGAAAGTCGCTGGTTAGGGTGGCCTCCTTCTAGAGAAGTGGGATACGGTAGTCCCTGAATTTCTGCACTATCCACTGTGGCCTACAAACCCATATTTCATGTTTTCTAGTCCACCAACCTTCTATTCCCATTTCCTCCAATAATCTTCAAATCGCCATCCACTTGTCCAATGGTCCGTCCCGACTCCGCGGATTCCATAACTCCAAATTCGACTTCTCTCAACGATAGCATATCAGAGCCCTCCGAAGATTCAGAAGTCGTCTCGAAATTCAATTGGAACGGTGACCGAATCGATGAGTTAGCAAAACGAGCGACAACTTCAAGCTTCTGAATTCTGACGTCTCCTATTTCAGGAATATTCTGAAGGAAGAGAGCAGTCTCTTCTCCAGATAAAATCGAAGCTGGTCGGATTTCTAAAATGCCTTCTGGCTCGATAGAAAGTTGAATTTCCTGTCCCTCGACTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCTACATGGAAACTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAATTCAGGGACTACCGTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAATTCTACATGGAAACTCAAAATTCTTTTTTTTTCGTTTATCAACTTTGAGCCCCTATATCTCGCTTTCTGTGAATGGTATCAAGAATGTGAGTACTGATAAAATGGTTATCAAAATATCAGCAACATTTTATCAGTTGACCACTCTTTGATGTCTTTCACTGGAACCGAGATATATAGTCTGAAAGTCGCTGGTTAGGGTGGCCTCCTTCTAGAGAAGTGGGATACGGTAGTCCCTGAATTTCT</canonical_amplicon>
		<polymorphic_amplicon>AAATTCTACATGGAAACTCAAAATTCTTTTTTTTTCGTTTATCAACTTTGAGCCCCTATATCTCGCTTTCTGTGAATGGTATCAAGAATGTGAGTACTGATAAAATGGTTATCAAAATATCAGCAACATTTTATCAGTTGACCACTYTTTGATGTCTTTCACTGGAACCGAGATATATAGTCTGAAAGTCGCTGGTTAGGGTGGCCTCCTTCTAGAGAAGTGGGATACGGTAGTCCCTGAATTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29501</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>123277</contig_pos>
        <strand></strand>
        <context>tgtctttcac[T/A]ggaaccgaga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CAAAATATCAGCAACATTTTATCAGTTGACCACTCTTTGATGTCTTTCAC</left_flank>
        <right_flank>GGAACCGAGATATATAGTCTGAAAGTCGCTGGTTAGGGTGGCCTCCTTCT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGGTTTCTATGAGAGACATCAGAAAGAATTCTATTGATAAAATTGGTATTACCTTATCAGCAAAGTATTATCAGTTGATCACTTTTTGATATCTTTCCCAGGAAAAGAGATATGCAAGATCAAAGTTGAGAGCCCTAAATTCTACATGGAAACTCAAAGTTCTTTTTTTTTTGTTCATCAACTTTGAGCCCATATATCTCGATTCCTGTAGAAAATATCAAAAGATTGTCAACTAATAAAACATTTATCAAAATATCAGCAACATTTTATCAGTTGACCACATTTTGATGTCTTTCACAGGAACCGAGATATATAGCCTCAAAGTTGAGAGTTTTAAATTCTACATGGAAACTCAAAATTCTTTTTTTTTCGTTTATCAACTTTGAGCCCCTATATCTCGCTTTCTGTGAATGGTATCAAGAATGTGAGTACTGATAAAATGGTTATCAAAATATCAGCAACATTTTATCAGTTGACCACTCTTTGATGTCTTTCACTGGAACCGAGATATATAGTCTGAAAGTCGCTGGTTAGGGTGGCCTCCTTCTAGAGAAGTGGGATACGGTAGTCCCTGAATTTCTGCACTATCCACTGTGGCCTACAAACCCATATTTCATGTTTTCTAGTCCACCAACCTTCTATTCCCATTTCCTCCAATAATCTTCAAATCGCCATCCACTTGTCCAATGGTCCGTCCCGACTCCGCGGATTCCATAACTCCAAATTCGACTTCTCTCAACGATAGCATATCAGAGCCCTCCGAAGATTCAGAAGTCGTCTCGAAATTCAATTGGAACGGTGACCGAATCGATGAGTTAGCAAAACGAGCGACAACTTCAAGCTTCTGAATTCTGACGTCTCCTATTTCAGGAATATTCTGAAGGAAGAGAGCAGTCTCTTCTCCAGATAAAATCGAAGCTGGTCGGATTTCTAAAATGCCTTCTGGCTCGATAGAAAGTTGAATTTCCTGTCCCTCGACTCCTTGGAAGTCTACATTG</canonical>
            <polymorphic>CTCGGTTTCTATGAGAGACATCAGAAAGAATTCTATTGATAAAATTGGTATTACCTTATCAGCAAAGTATTATCAGTTGATCACTTTTTGATATCTTTCCCAGGAAAAGAGATATGCAAGATCAAAGTTGAGAGCCCTAAATTCTACATGGAAACTCAAAGTTCTTTTTTTTTTGTTCATCAACTTTGAGCCCATATATCTCGATTCCTGTAGAAAATATCAAAAGATTGTCAACTAATAAAACATTTATCAAAATATCAGCAACATTTTATCAGTTGACCACATTTTGATGTCTTTCACAGGAACCGAGATATATAGCCTCAAAGTTGAGAGTTTTAAATTCTACATGGAAACTCAAAATTCTTTTTTTTTCGTTTATCAACTTTGAGCCCCTATATCTCGCTTTCTGTGAATGGTATCAAGAATGTGAGTACTGATAAAATGGTTATCAAAATATCAGCAACATTTTATCAGTTGACCACTCTTTGATGTCTTTCACWGGAACCGAGATATATAGTCTGAAAGTCGCTGGTTAGGGTGGCCTCCTTCTAGAGAAGTGGGATACGGTAGTCCCTGAATTTCTGCACTATCCACTGTGGCCTACAAACCCATATTTCATGTTTTCTAGTCCACCAACCTTCTATTCCCATTTCCTCCAATAATCTTCAAATCGCCATCCACTTGTCCAATGGTCCGTCCCGACTCCGCGGATTCCATAACTCCAAATTCGACTTCTCTCAACGATAGCATATCAGAGCCCTCCGAAGATTCAGAAGTCGTCTCGAAATTCAATTGGAACGGTGACCGAATCGATGAGTTAGCAAAACGAGCGACAACTTCAAGCTTCTGAATTCTGACGTCTCCTATTTCAGGAATATTCTGAAGGAAGAGAGCAGTCTCTTCTCCAGATAAAATCGAAGCTGGTCGGATTTCTAAAATGCCTTCTGGCTCGATAGAAAGTTGAATTTCCTGTCCCTCGACTCCTTGGAAGTCTACATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCTACATGGAAACTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAATTCAGGGACTACCGTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAATTCTACATGGAAACTCAAAATTCTTTTTTTTTCGTTTATCAACTTTGAGCCCCTATATCTCGCTTTCTGTGAATGGTATCAAGAATGTGAGTACTGATAAAATGGTTATCAAAATATCAGCAACATTTTATCAGTTGACCACTCTTTGATGTCTTTCACTGGAACCGAGATATATAGTCTGAAAGTCGCTGGTTAGGGTGGCCTCCTTCTAGAGAAGTGGGATACGGTAGTCCCTGAATTTCT</canonical_amplicon>
		<polymorphic_amplicon>AAATTCTACATGGAAACTCAAAATTCTTTTTTTTTCGTTTATCAACTTTGAGCCCCTATATCTCGCTTTCTGTGAATGGTATCAAGAATGTGAGTACTGATAAAATGGTTATCAAAATATCAGCAACATTTTATCAGTTGACCACTCTTTGATGTCTTTCACWGGAACCGAGATATATAGTCTGAAAGTCGCTGGTTAGGGTGGCCTCCTTCTAGAGAAGTGGGATACGGTAGTCCCTGAATTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29502</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>123298</contig_pos>
        <strand></strand>
        <context>tatatagtct[G/C]aaagtcgctg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TCAGTTGACCACTCTTTGATGTCTTTCACTGGAACCGAGATATATAGTCT</left_flank>
        <right_flank>AAAGTCGCTGGTTAGGGTGGCCTCCTTCTAGAGAAGTGGGATACGGTAGT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAAAGAATTCTATTGATAAAATTGGTATTACCTTATCAGCAAAGTATTATCAGTTGATCACTTTTTGATATCTTTCCCAGGAAAAGAGATATGCAAGATCAAAGTTGAGAGCCCTAAATTCTACATGGAAACTCAAAGTTCTTTTTTTTTTGTTCATCAACTTTGAGCCCATATATCTCGATTCCTGTAGAAAATATCAAAAGATTGTCAACTAATAAAACATTTATCAAAATATCAGCAACATTTTATCAGTTGACCACATTTTGATGTCTTTCACAGGAACCGAGATATATAGCCTCAAAGTTGAGAGTTTTAAATTCTACATGGAAACTCAAAATTCTTTTTTTTTCGTTTATCAACTTTGAGCCCCTATATCTCGCTTTCTGTGAATGGTATCAAGAATGTGAGTACTGATAAAATGGTTATCAAAATATCAGCAACATTTTATCAGTTGACCACTCTTTGATGTCTTTCACTGGAACCGAGATATATAGTCTGAAAGTCGCTGGTTAGGGTGGCCTCCTTCTAGAGAAGTGGGATACGGTAGTCCCTGAATTTCTGCACTATCCACTGTGGCCTACAAACCCATATTTCATGTTTTCTAGTCCACCAACCTTCTATTCCCATTTCCTCCAATAATCTTCAAATCGCCATCCACTTGTCCAATGGTCCGTCCCGACTCCGCGGATTCCATAACTCCAAATTCGACTTCTCTCAACGATAGCATATCAGAGCCCTCCGAAGATTCAGAAGTCGTCTCGAAATTCAATTGGAACGGTGACCGAATCGATGAGTTAGCAAAACGAGCGACAACTTCAAGCTTCTGAATTCTGACGTCTCCTATTTCAGGAATATTCTGAAGGAAGAGAGCAGTCTCTTCTCCAGATAAAATCGAAGCTGGTCGGATTTCTAAAATGCCTTCTGGCTCGATAGAAAGTTGAATTTCCTGTCCCTCGACTCCTTGGAAGTCTACATTGACTCCTCTGATGACGTCGCCA</canonical>
            <polymorphic>CAGAAAGAATTCTATTGATAAAATTGGTATTACCTTATCAGCAAAGTATTATCAGTTGATCACTTTTTGATATCTTTCCCAGGAAAAGAGATATGCAAGATCAAAGTTGAGAGCCCTAAATTCTACATGGAAACTCAAAGTTCTTTTTTTTTTGTTCATCAACTTTGAGCCCATATATCTCGATTCCTGTAGAAAATATCAAAAGATTGTCAACTAATAAAACATTTATCAAAATATCAGCAACATTTTATCAGTTGACCACATTTTGATGTCTTTCACAGGAACCGAGATATATAGCCTCAAAGTTGAGAGTTTTAAATTCTACATGGAAACTCAAAATTCTTTTTTTTTCGTTTATCAACTTTGAGCCCCTATATCTCGCTTTCTGTGAATGGTATCAAGAATGTGAGTACTGATAAAATGGTTATCAAAATATCAGCAACATTTTATCAGTTGACCACTCTTTGATGTCTTTCACTGGAACCGAGATATATAGTCTSAAAGTCGCTGGTTAGGGTGGCCTCCTTCTAGAGAAGTGGGATACGGTAGTCCCTGAATTTCTGCACTATCCACTGTGGCCTACAAACCCATATTTCATGTTTTCTAGTCCACCAACCTTCTATTCCCATTTCCTCCAATAATCTTCAAATCGCCATCCACTTGTCCAATGGTCCGTCCCGACTCCGCGGATTCCATAACTCCAAATTCGACTTCTCTCAACGATAGCATATCAGAGCCCTCCGAAGATTCAGAAGTCGTCTCGAAATTCAATTGGAACGGTGACCGAATCGATGAGTTAGCAAAACGAGCGACAACTTCAAGCTTCTGAATTCTGACGTCTCCTATTTCAGGAATATTCTGAAGGAAGAGAGCAGTCTCTTCTCCAGATAAAATCGAAGCTGGTCGGATTTCTAAAATGCCTTCTGGCTCGATAGAAAGTTGAATTTCCTGTCCCTCGACTCCTTGGAAGTCTACATTGACTCCTCTGATGACGTCGCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>499 234 81 76 46 26 13 9 9 7</canonical_bands>
                <polymorphic_bands>733 81 76 46 26 13 9 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTCTACATGGAAACTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAATTCAGGGACTACCGTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAATTCTACATGGAAACTCAAAATTCTTTTTTTTTCGTTTATCAACTTTGAGCCCCTATATCTCGCTTTCTGTGAATGGTATCAAGAATGTGAGTACTGATAAAATGGTTATCAAAATATCAGCAACATTTTATCAGTTGACCACTCTTTGATGTCTTTCACTGGAACCGAGATATATAGTCTGAAAGTCGCTGGTTAGGGTGGCCTCCTTCTAGAGAAGTGGGATACGGTAGTCCCTGAATTTCT</canonical_amplicon>
		<polymorphic_amplicon>AAATTCTACATGGAAACTCAAAATTCTTTTTTTTTCGTTTATCAACTTTGAGCCCCTATATCTCGCTTTCTGTGAATGGTATCAAGAATGTGAGTACTGATAAAATGGTTATCAAAATATCAGCAACATTTTATCAGTTGACCACTCTTTGATGTCTTTCACTGGAACCGAGATATATAGTCTSAAAGTCGCTGGTTAGGGTGGCCTCCTTCTAGAGAAGTGGGATACGGTAGTCCCTGAATTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29503</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>123316</contig_pos>
        <strand></strand>
        <context>ctggttaggg[T/G]ggcctccttc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATGTCTTTCACTGGAACCGAGATATATAGTCTGAAAGTCGCTGGTTAGGG</left_flank>
        <right_flank>GGCCTCCTTCTAGAGAAGTGGGATACGGTAGTCCCTGAATTTCTGCACTA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAATTGGTATTACCTTATCAGCAAAGTATTATCAGTTGATCACTTTTTGATATCTTTCCCAGGAAAAGAGATATGCAAGATCAAAGTTGAGAGCCCTAAATTCTACATGGAAACTCAAAGTTCTTTTTTTTTTGTTCATCAACTTTGAGCCCATATATCTCGATTCCTGTAGAAAATATCAAAAGATTGTCAACTAATAAAACATTTATCAAAATATCAGCAACATTTTATCAGTTGACCACATTTTGATGTCTTTCACAGGAACCGAGATATATAGCCTCAAAGTTGAGAGTTTTAAATTCTACATGGAAACTCAAAATTCTTTTTTTTTCGTTTATCAACTTTGAGCCCCTATATCTCGCTTTCTGTGAATGGTATCAAGAATGTGAGTACTGATAAAATGGTTATCAAAATATCAGCAACATTTTATCAGTTGACCACTCTTTGATGTCTTTCACTGGAACCGAGATATATAGTCTGAAAGTCGCTGGTTAGGGTGGCCTCCTTCTAGAGAAGTGGGATACGGTAGTCCCTGAATTTCTGCACTATCCACTGTGGCCTACAAACCCATATTTCATGTTTTCTAGTCCACCAACCTTCTATTCCCATTTCCTCCAATAATCTTCAAATCGCCATCCACTTGTCCAATGGTCCGTCCCGACTCCGCGGATTCCATAACTCCAAATTCGACTTCTCTCAACGATAGCATATCAGAGCCCTCCGAAGATTCAGAAGTCGTCTCGAAATTCAATTGGAACGGTGACCGAATCGATGAGTTAGCAAAACGAGCGACAACTTCAAGCTTCTGAATTCTGACGTCTCCTATTTCAGGAATATTCTGAAGGAAGAGAGCAGTCTCTTCTCCAGATAAAATCGAAGCTGGTCGGATTTCTAAAATGCCTTCTGGCTCGATAGAAAGTTGAATTTCCTGTCCCTCGACTCCTTGGAAGTCTACATTGACTCCTCTGATGACGTCGCCAGGTCTCGCGCCACGTGGA</canonical>
            <polymorphic>TAAAATTGGTATTACCTTATCAGCAAAGTATTATCAGTTGATCACTTTTTGATATCTTTCCCAGGAAAAGAGATATGCAAGATCAAAGTTGAGAGCCCTAAATTCTACATGGAAACTCAAAGTTCTTTTTTTTTTGTTCATCAACTTTGAGCCCATATATCTCGATTCCTGTAGAAAATATCAAAAGATTGTCAACTAATAAAACATTTATCAAAATATCAGCAACATTTTATCAGTTGACCACATTTTGATGTCTTTCACAGGAACCGAGATATATAGCCTCAAAGTTGAGAGTTTTAAATTCTACATGGAAACTCAAAATTCTTTTTTTTTCGTTTATCAACTTTGAGCCCCTATATCTCGCTTTCTGTGAATGGTATCAAGAATGTGAGTACTGATAAAATGGTTATCAAAATATCAGCAACATTTTATCAGTTGACCACTCTTTGATGTCTTTCACTGGAACCGAGATATATAGTCTGAAAGTCGCTGGTTAGGGKGGCCTCCTTCTAGAGAAGTGGGATACGGTAGTCCCTGAATTTCTGCACTATCCACTGTGGCCTACAAACCCATATTTCATGTTTTCTAGTCCACCAACCTTCTATTCCCATTTCCTCCAATAATCTTCAAATCGCCATCCACTTGTCCAATGGTCCGTCCCGACTCCGCGGATTCCATAACTCCAAATTCGACTTCTCTCAACGATAGCATATCAGAGCCCTCCGAAGATTCAGAAGTCGTCTCGAAATTCAATTGGAACGGTGACCGAATCGATGAGTTAGCAAAACGAGCGACAACTTCAAGCTTCTGAATTCTGACGTCTCCTATTTCAGGAATATTCTGAAGGAAGAGAGCAGTCTCTTCTCCAGATAAAATCGAAGCTGGTCGGATTTCTAAAATGCCTTCTGGCTCGATAGAAAGTTGAATTTCCTGTCCCTCGACTCCTTGGAAGTCTACATTGACTCCTCTGATGACGTCGCCAGGTCTCGCGCCACGTGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 440 58</canonical_bands>
                <polymorphic_bands>560 440</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>230 199 123 112 52 48 44 42 34 27 19 18 17 17 7 5 4 2</canonical_bands>
                <polymorphic_bands>230 199 123 112 61 52 48 44 34 27 18 17 17 7 5 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACATGGAAACTCAAAATTCTTT</pcr_primer_p1>
		<pcr_primer_p2>AGTGGATAGTGCAGAAATTCA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TACATGGAAACTCAAAATTCTTTTTTTTTCGTTTATCAACTTTGAGCCCCTATATCTCGCTTTCTGTGAATGGTATCAAGAATGTGAGTACTGATAAAATGGTTATCAAAATATCAGCAACATTTTATCAGTTGACCACTCTTTGATGTCTTTCACTGGAACCGAGATATATAGTCTGAAAGTCGCTGGTTAGGGTGGCCTCCTTCTAGAGAAGTGGGATACGGTAGTCCCTGAATTTCTGCACTATCCACT</canonical_amplicon>
		<polymorphic_amplicon>TACATGGAAACTCAAAATTCTTTTTTTTTCGTTTATCAACTTTGAGCCCCTATATCTCGCTTTCTGTGAATGGTATCAAGAATGTGAGTACTGATAAAATGGTTATCAAAATATCAGCAACATTTTATCAGTTGACCACTCTTTGATGTCTTTCACTGGAACCGAGATATATAGTCTGAAAGTCGCTGGTTAGGGKGGCCTCCTTCTAGAGAAGTGGGATACGGTAGTCCCTGAATTTCTGCACTATCCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29504</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>123685</contig_pos>
        <strand>+</strand>
        <context>CTCTTCTCCA[A/G]AKAAAATCGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTCTCCTATTTCAGGAATATTCTGAAGGAAGAGAGCAGTCTCTTCTCCA</left_flank>
        <right_flank>ATAAAATCGAAGCTGGTCGGATTTCTAAAATGCCTTCTGGCTCGATAGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGAATGGTATCAAGAATGTGAGTACTGATAAAATGGTTATCAAAATATCAGCAACATTTTATCAGTTGACCACTCTTTGATGTCTTTCACTGGAACCGAGATATATAGTCTGAAAGTCGCTGGTTAGGGTGGCCTCCTTCTAGAGAAGTGGGATACGGTAGTCCCTGAATTTCTGCACTATCCACTGTGGCCTACAAACCCATATTTCATGTTTTCTAGTCCACCAACCTTCTATTCCCATTTCCTCCAATAATCTTCAAATCGCCATCCACTTGTCCAATGGTCCGTCCCGACTCCGCGGATTCCATAACTCCAAATTCGACTTCTCTCAACGATAGCATATCAGAGCCCTCCGAAGATTCAGAAGTCGTCTCGAAATTCAATTGGAACGGTGACCGAATCGATGAGTTAGCAAAACGAGCGACAACTTCAAGCTTCTGAATTCTGACGTCTCCTATTTCAGGAATATTCTGAAGGAAGAGAGCAGTCTCTTCTCCAGATAAAATCGAAGCTGGTCGGATTTCTAAAATGCCTTCTGGCTCGATAGAAAGTTGAATTTCCTGTCCCTCGACTCCTTGGAAGTCTACATTGACTCCTCTGATGACGTCGCCAGGTCTCGCGCCACGTGGAATCTGAATAGTGTCTTCTGGAGCGCCACGGAGATTCAGATGGACGTTCTCAATTGGTTGGATTTCTCCATCTGGGGAAGTTCTGAGTGGAAGGATGGTGATAGGACCGGTGATGGGATCCTCTTGTGATTCTGGTAGTTCTCCTGATGATTCCTCGGCTGATCCTTCTCCAGAAGCATCCTGGCTTTCTGAATCCAAAACTTCCACTTCTTCCTTCTCTTCTTCTGCGGTGGGCGTAGAAACTGGCGTTGTAAGATCGTCGTCAGATCCTCCGATGGTGAGAACGTCATCTGGAGATGTGGCAGAAGTCGTGAGCGATTCTTGAGATTCTGGAGCTCCAGAAGAAGCTGAAGATTCTGTAGAAGATTCT</canonical>
            <polymorphic>GTGAATGGTATCAAGAATGTGAGTACTGATAAAATGGTTATCAAAATATCAGCAACATTTTATCAGTTGACCACTCTTTGATGTCTTTCACTGGAACCGAGATATATAGTCTGAAAGTCGCTGGTTAGGGTGGCCTCCTTCTAGAGAAGTGGGATACGGTAGTCCCTGAATTTCTGCACTATCCACTGTGGCCTACAAACCCATATTTCATGTTTTCTAGTCCACCAACCTTCTATTCCCATTTCCTCCAATAATCTTCAAATCGCCATCCACTTGTCCAATGGTCCGTCCCGACTCCGCGGATTCCATAACTCCAAATTCGACTTCTCTCAACGATAGCATATCAGAGCCCTCCGAAGATTCAGAAGTCGTCTCGAAATTCAATTGGAACGGTGACCGAATCGATGAGTTAGCAAAACGAGCGACAACTTCAAGCTTCTGAATTCTGACGTCTCCTATTTCAGGAATATTCTGAAGGAAGAGAGCAGTCTCTTCTCCARATAAAATCGAAGCTGGTCGGATTTCTAAAATGCCTTCTGGCTCGATAGAAAGTTGAATTTCCTGTCCCTCGACTCCTTGGAAGTCTACATTGACTCCTCTGATGACGTCGCCAGGTCTCGCGCCACGTGGAATCTGAATAGTGTCTTCTGGAGCGCCACGGAGATTCAGATGGACGTTCTCAATTGGTTGGATTTCTCCATCTGGGGAAGTTCTGAGTGGAAGGATGGTGATAGGACCGGTGATGGGATCCTCTTGTGATTCTGGTAGTTCTCCTGATGATTCCTCGGCTGATCCTTCTCCAGAAGCATCCTGGCTTTCTGAATCCAAAACTTCCACTTCTTCCTTCTCTTCTTCTGCGGTGGGCGTAGAAACTGGCGTTGTAAGATCGTCGTCAGATCCTCCGATGGTGAGAACGTCATCTGGAGATGTGGCAGAAGTCGTGAGCGATTCTTGAGATTCTGGAGCTCCAGAAGAAGCTGAAGATTCTGTAGAAGATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>151 149 129 125 121 89 83 35 32 27 19 12 11 9 8</canonical_bands>
                <polymorphic_bands>186 149 129 125 121 89 83 32 27 19 12 11 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAGAAGTCGTCTCGAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTCATCAGAGGAGTCAATGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTCAGAAGTCGTCTCGAAATTCAATTGGAACGGTGACCGAATCGATGAGTTAGCAAAACGAGCGACAACTTCAAGCTTCTGAATTCTGACGTCTCCTATTTCAGGAATATTCTGAAGGAAGAGAGCAGTCTCTTCTCCAGATAAAATCGAAGCTGGTCGGATTTCTAAAATGCCTTCTGGCTCGATAGAAAGTTGAATTTCCTGTCCCTCGACTCCTTGGAAGTCTACATTGACTCCTCTGATGAC</canonical_amplicon>
		<polymorphic_amplicon>TTCAGAAGTCGTCTCGAAATTCAATTGGAACGGTGACCGAATCGATGAGTTAGCAAAACGAGCGACAACTTCAAGCTTCTGAATTCTGACGTCTCCTATTTCAGGAATATTCTGAAGGAAGAGAGCAGTCTCTTCTCCARATAAAATCGAAGCTGGTCGGATTTCTAAAATGCCTTCTGGCTCGATAGAAAGTTGAATTTCCTGTCCCTCGACTCCTTGGAAGTCTACATTGACTCCTCTGATGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29505</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>123687</contig_pos>
        <strand>+</strand>
        <context>CTTCTCCARA[G/T]AAAATCGAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTCCTATTTCAGGAATATTCTGAAGGAAGAGAGCAGTCTCTTCTCCAGA</left_flank>
        <right_flank>AAAATCGAAGCTGGTCGGATTTCTAAAATGCCTTCTGGCTCGATAGAAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATGGTATCAAGAATGTGAGTACTGATAAAATGGTTATCAAAATATCAGCAACATTTTATCAGTTGACCACTCTTTGATGTCTTTCACTGGAACCGAGATATATAGTCTGAAAGTCGCTGGTTAGGGTGGCCTCCTTCTAGAGAAGTGGGATACGGTAGTCCCTGAATTTCTGCACTATCCACTGTGGCCTACAAACCCATATTTCATGTTTTCTAGTCCACCAACCTTCTATTCCCATTTCCTCCAATAATCTTCAAATCGCCATCCACTTGTCCAATGGTCCGTCCCGACTCCGCGGATTCCATAACTCCAAATTCGACTTCTCTCAACGATAGCATATCAGAGCCCTCCGAAGATTCAGAAGTCGTCTCGAAATTCAATTGGAACGGTGACCGAATCGATGAGTTAGCAAAACGAGCGACAACTTCAAGCTTCTGAATTCTGACGTCTCCTATTTCAGGAATATTCTGAAGGAAGAGAGCAGTCTCTTCTCCAGATAAAATCGAAGCTGGTCGGATTTCTAAAATGCCTTCTGGCTCGATAGAAAGTTGAATTTCCTGTCCCTCGACTCCTTGGAAGTCTACATTGACTCCTCTGATGACGTCGCCAGGTCTCGCGCCACGTGGAATCTGAATAGTGTCTTCTGGAGCGCCACGGAGATTCAGATGGACGTTCTCAATTGGTTGGATTTCTCCATCTGGGGAAGTTCTGAGTGGAAGGATGGTGATAGGACCGGTGATGGGATCCTCTTGTGATTCTGGTAGTTCTCCTGATGATTCCTCGGCTGATCCTTCTCCAGAAGCATCCTGGCTTTCTGAATCCAAAACTTCCACTTCTTCCTTCTCTTCTTCTGCGGTGGGCGTAGAAACTGGCGTTGTAAGATCGTCGTCAGATCCTCCGATGGTGAGAACGTCATCTGGAGATGTGGCAGAAGTCGTGAGCGATTCTTGAGATTCTGGAGCTCCAGAAGAAGCTGAAGATTCTGTAGAAGATTCTGG</canonical>
            <polymorphic>GAATGGTATCAAGAATGTGAGTACTGATAAAATGGTTATCAAAATATCAGCAACATTTTATCAGTTGACCACTCTTTGATGTCTTTCACTGGAACCGAGATATATAGTCTGAAAGTCGCTGGTTAGGGTGGCCTCCTTCTAGAGAAGTGGGATACGGTAGTCCCTGAATTTCTGCACTATCCACTGTGGCCTACAAACCCATATTTCATGTTTTCTAGTCCACCAACCTTCTATTCCCATTTCCTCCAATAATCTTCAAATCGCCATCCACTTGTCCAATGGTCCGTCCCGACTCCGCGGATTCCATAACTCCAAATTCGACTTCTCTCAACGATAGCATATCAGAGCCCTCCGAAGATTCAGAAGTCGTCTCGAAATTCAATTGGAACGGTGACCGAATCGATGAGTTAGCAAAACGAGCGACAACTTCAAGCTTCTGAATTCTGACGTCTCCTATTTCAGGAATATTCTGAAGGAAGAGAGCAGTCTCTTCTCCAGAKAAAATCGAAGCTGGTCGGATTTCTAAAATGCCTTCTGGCTCGATAGAAAGTTGAATTTCCTGTCCCTCGACTCCTTGGAAGTCTACATTGACTCCTCTGATGACGTCGCCAGGTCTCGCGCCACGTGGAATCTGAATAGTGTCTTCTGGAGCGCCACGGAGATTCAGATGGACGTTCTCAATTGGTTGGATTTCTCCATCTGGGGAAGTTCTGAGTGGAAGGATGGTGATAGGACCGGTGATGGGATCCTCTTGTGATTCTGGTAGTTCTCCTGATGATTCCTCGGCTGATCCTTCTCCAGAAGCATCCTGGCTTTCTGAATCCAAAACTTCCACTTCTTCCTTCTCTTCTTCTGCGGTGGGCGTAGAAACTGGCGTTGTAAGATCGTCGTCAGATCCTCCGATGGTGAGAACGTCATCTGGAGATGTGGCAGAAGTCGTGAGCGATTCTTGAGATTCTGGAGCTCCAGAAGAAGCTGAAGATTCTGTAGAAGATTCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAGAAGTCGTCTCGAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTCATCAGAGGAGTCAATGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTCAGAAGTCGTCTCGAAATTCAATTGGAACGGTGACCGAATCGATGAGTTAGCAAAACGAGCGACAACTTCAAGCTTCTGAATTCTGACGTCTCCTATTTCAGGAATATTCTGAAGGAAGAGAGCAGTCTCTTCTCCAGATAAAATCGAAGCTGGTCGGATTTCTAAAATGCCTTCTGGCTCGATAGAAAGTTGAATTTCCTGTCCCTCGACTCCTTGGAAGTCTACATTGACTCCTCTGATGAC</canonical_amplicon>
		<polymorphic_amplicon>TTCAGAAGTCGTCTCGAAATTCAATTGGAACGGTGACCGAATCGATGAGTTAGCAAAACGAGCGACAACTTCAAGCTTCTGAATTCTGACGTCTCCTATTTCAGGAATATTCTGAAGGAAGAGAGCAGTCTCTTCTCCAGAKAAAATCGAAGCTGGTCGGATTTCTAAAATGCCTTCTGGCTCGATAGAAAGTTGAATTTCCTGTCCCTCGACTCCTTGGAAGTCTACATTGACTCCTCTGATGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29506</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>124747</contig_pos>
        <strand></strand>
        <context>taggctccgc[C/T]tcttctgata</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCTCGCGTTAAGAGCTTCAAAAGGAGGATAAACATGCCTAGGCTCCGC</left_flank>
        <right_flank>TCTTCTGATATTTCACTTTAAAGGCGCATAGGGGTCCGAATTTTTCAAAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGTCCTCCTAGTGTCAGAACATCAGATTCCGAACTCTCTGTAGAATCTCCCGAATTCACCGTCGTCGTCGCTTCTGCCTTCACAGCTTCAGTTGCCATCTTCGGCTCACTTGGTACCGTAACCCTGACTCTTTTCGTCGTCGGTGCCAAACTTATCACATCCACAGAAATATTGGTCGTTGCCAGGACAACATCTCCTTGCTGCGCTTCGACTACAAATTTATAGAGACCTCCTTCGGTTTTCGAAATTTCCACGTTGGCATTTGGTCGGAGGATTACTGTAGCCTTGTAAACATCTGCATTGTCGGCGCGAGTCTTTTCAATGTTTCCAATATCGAACCATTCATTTTCGTCAAAATTCACAATGAAGGTTGGCTTTACATTGTGCTTTCGGGTGATGAAATCGACGACTGCGAGGATTGTGGAGTTCTGAAAAGTTGAGAATTGAGTTTCTCGCGTTAAGAGCTTCAAAAGGAGGATAAACATGCCTAGGCTCCGCCTCTTCTGATATTTCACTTTAAAGGCGCATAGGGGTCCGAATTTTTCAAAGTGGGCGGATCTTAATCATGATTATACTCATTTTGAAGCGCGTATGATGAGAAATCGATATGTTAAACTTTCGTTAAGTTTGAAGCAAAACTGGCTGGGTTACGGTAGTTTTTGTAGTTCAACACAGTCAAGAGCTCACCTCATTATTCCCCTCTGGCAACATGAAATCATAGGACGGCTGATCGAACTTGTCTGGAATTGACGTGGCGTCTCCAACAACTTCTGAGGACGAATCCGACGATTTTGATGGCGTTTCGTCACGACGGACCACGAACTGAAATTAGAAAATTTATATAATTCAAGTATTGAGCTCAATTATTTTGGTTATTTAGAAAAATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATAATATCAACAATATTTCATAAATTCACAAATATTTGATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGAGAGG</canonical>
            <polymorphic>CGGTCCTCCTAGTGTCAGAACATCAGATTCCGAACTCTCTGTAGAATCTCCCGAATTCACCGTCGTCGTCGCTTCTGCCTTCACAGCTTCAGTTGCCATCTTCGGCTCACTTGGTACCGTAACCCTGACTCTTTTCGTCGTCGGTGCCAAACTTATCACATCCACAGAAATATTGGTCGTTGCCAGGACAACATCTCCTTGCTGCGCTTCGACTACAAATTTATAGAGACCTCCTTCGGTTTTCGAAATTTCCACGTTGGCATTTGGTCGGAGGATTACTGTAGCCTTGTAAACATCTGCATTGTCGGCGCGAGTCTTTTCAATGTTTCCAATATCGAACCATTCATTTTCGTCAAAATTCACAATGAAGGTTGGCTTTACATTGTGCTTTCGGGTGATGAAATCGACGACTGCGAGGATTGTGGAGTTCTGAAAAGTTGAGAATTGAGTTTCTCGCGTTAAGAGCTTCAAAAGGAGGATAAACATGCCTAGGCTCCGCYTCTTCTGATATTTCACTTTAAAGGCGCATAGGGGTCCGAATTTTTCAAAGTGGGCGGATCTTAATCATGATTATACTCATTTTGAAGCGCGTATGATGAGAAATCGATATGTTAAACTTTCGTTAAGTTTGAAGCAAAACTGGCTGGGTTACGGTAGTTTTTGTAGTTCAACACAGTCAAGAGCTCACCTCATTATTCCCCTCTGGCAACATGAAATCATAGGACGGCTGATCGAACTTGTCTGGAATTGACGTGGCGTCTCCAACAACTTCTGAGGACGAATCCGACGATTTTGATGGCGTTTCGTCACGACGGACCACGAACTGAAATTAGAAAATTTATATAATTCAAGTATTGAGCTCAATTATTTTGGTTATTTAGAAAAATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATAATATCAACAATATTTCATAAATTCACAAATATTTGATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGAGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGTTGGCTTTACATTGTG</pcr_primer_p1>
		<pcr_primer_p2>AGCTCTTGACTGTGTTGAACTA</pcr_primer_p2>
		<pcr_amplicon_size>318</pcr_amplicon_size>
		<canonical_amplicon>AAGGTTGGCTTTACATTGTGCTTTCGGGTGATGAAATCGACGACTGCGAGGATTGTGGAGTTCTGAAAAGTTGAGAATTGAGTTTCTCGCGTTAAGAGCTTCAAAAGGAGGATAAACATGCCTAGGCTCCGCCTCTTCTGATATTTCACTTTAAAGGCGCATAGGGGTCCGAATTTTTCAAAGTGGGCGGATCTTAATCATGATTATACTCATTTTGAAGCGCGTATGATGAGAAATCGATATGTTAAACTTTCGTTAAGTTTGAAGCAAAACTGGCTGGGTTACGGTAGTTTTTGTAGTTCAACACAGTCAAGAGCT</canonical_amplicon>
		<polymorphic_amplicon>AAGGTTGGCTTTACATTGTGCTTTCGGGTGATGAAATCGACGACTGCGAGGATTGTGGAGTTCTGAAAAGTTGAGAATTGAGTTTCTCGCGTTAAGAGCTTCAAAAGGAGGATAAACATGCCTAGGCTCCGCYTCTTCTGATATTTCACTTTAAAGGCGCATAGGGGTCCGAATTTTTCAAAGTGGGCGGATCTTAATCATGATTATACTCATTTTGAAGCGCGTATGATGAGAAATCGATATGTTAAACTTTCGTTAAGTTTGAAGCAAAACTGGCTGGGTTACGGTAGTTTTTGTAGTTCAACACAGTCAAGAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29507</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>124813</contig_pos>
        <strand></strand>
        <context>ggatcttaat[C/T]atgattatac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTAAAGGCGCATAGGGGTCCGAATTTTTCAAAGTGGGCGGATCTTAAT</left_flank>
        <right_flank>ATGATTATACTCATTTTGAAGCGCGTATGATGAGAAATCGATATGTTAAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTCGCTTCTGCCTTCACAGCTTCAGTTGCCATCTTCGGCTCACTTGGTACCGTAACCCTGACTCTTTTCGTCGTCGGTGCCAAACTTATCACATCCACAGAAATATTGGTCGTTGCCAGGACAACATCTCCTTGCTGCGCTTCGACTACAAATTTATAGAGACCTCCTTCGGTTTTCGAAATTTCCACGTTGGCATTTGGTCGGAGGATTACTGTAGCCTTGTAAACATCTGCATTGTCGGCGCGAGTCTTTTCAATGTTTCCAATATCGAACCATTCATTTTCGTCAAAATTCACAATGAAGGTTGGCTTTACATTGTGCTTTCGGGTGATGAAATCGACGACTGCGAGGATTGTGGAGTTCTGAAAAGTTGAGAATTGAGTTTCTCGCGTTAAGAGCTTCAAAAGGAGGATAAACATGCCTAGGCTCCGCCTCTTCTGATATTTCACTTTAAAGGCGCATAGGGGTCCGAATTTTTCAAAGTGGGCGGATCTTAATCATGATTATACTCATTTTGAAGCGCGTATGATGAGAAATCGATATGTTAAACTTTCGTTAAGTTTGAAGCAAAACTGGCTGGGTTACGGTAGTTTTTGTAGTTCAACACAGTCAAGAGCTCACCTCATTATTCCCCTCTGGCAACATGAAATCATAGGACGGCTGATCGAACTTGTCTGGAATTGACGTGGCGTCTCCAACAACTTCTGAGGACGAATCCGACGATTTTGATGGCGTTTCGTCACGACGGACCACGAACTGAAATTAGAAAATTTATATAATTCAAGTATTGAGCTCAATTATTTTGGTTATTTAGAAAAATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATAATATCAACAATATTTCATAAATTCACAAATATTTGATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGAGAGGTATCGAAAGGTGGTAAACCGCTATTGCTTCCATAGAACGTTCACTTTGAGCTCAATCATCTCGGCT</canonical>
            <polymorphic>CGTCGCTTCTGCCTTCACAGCTTCAGTTGCCATCTTCGGCTCACTTGGTACCGTAACCCTGACTCTTTTCGTCGTCGGTGCCAAACTTATCACATCCACAGAAATATTGGTCGTTGCCAGGACAACATCTCCTTGCTGCGCTTCGACTACAAATTTATAGAGACCTCCTTCGGTTTTCGAAATTTCCACGTTGGCATTTGGTCGGAGGATTACTGTAGCCTTGTAAACATCTGCATTGTCGGCGCGAGTCTTTTCAATGTTTCCAATATCGAACCATTCATTTTCGTCAAAATTCACAATGAAGGTTGGCTTTACATTGTGCTTTCGGGTGATGAAATCGACGACTGCGAGGATTGTGGAGTTCTGAAAAGTTGAGAATTGAGTTTCTCGCGTTAAGAGCTTCAAAAGGAGGATAAACATGCCTAGGCTCCGCCTCTTCTGATATTTCACTTTAAAGGCGCATAGGGGTCCGAATTTTTCAAAGTGGGCGGATCTTAATYATGATTATACTCATTTTGAAGCGCGTATGATGAGAAATCGATATGTTAAACTTTCGTTAAGTTTGAAGCAAAACTGGCTGGGTTACGGTAGTTTTTGTAGTTCAACACAGTCAAGAGCTCACCTCATTATTCCCCTCTGGCAACATGAAATCATAGGACGGCTGATCGAACTTGTCTGGAATTGACGTGGCGTCTCCAACAACTTCTGAGGACGAATCCGACGATTTTGATGGCGTTTCGTCACGACGGACCACGAACTGAAATTAGAAAATTTATATAATTCAAGTATTGAGCTCAATTATTTTGGTTATTTAGAAAAATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATAATATCAACAATATTTCATAAATTCACAAATATTTGATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGAGAGGTATCGAAAGGTGGTAAACCGCTATTGCTTCCATAGAACGTTCACTTTGAGCTCAATCATCTCGGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATNNNNATC</site>
                <isoschizomers>
                    <enzyme>BsaBI</enzyme>
                    <enzyme>Bse8I</enzyme>
                    <enzyme>BseJI</enzyme>
                    <enzyme>BsiBI</enzyme>
                    <enzyme>BsrBRI</enzyme>
                    <enzyme>MamI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>418 356 144 82</canonical_bands>
                <polymorphic_bands>418 356 226</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>500 258 112 66 64</canonical_bands>
                <polymorphic_bands>612 258 66 64</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGTTGGCTTTACATTGTG</pcr_primer_p1>
		<pcr_primer_p2>AGCTCTTGACTGTGTTGAACTA</pcr_primer_p2>
		<pcr_amplicon_size>318</pcr_amplicon_size>
		<canonical_amplicon>AAGGTTGGCTTTACATTGTGCTTTCGGGTGATGAAATCGACGACTGCGAGGATTGTGGAGTTCTGAAAAGTTGAGAATTGAGTTTCTCGCGTTAAGAGCTTCAAAAGGAGGATAAACATGCCTAGGCTCCGCCTCTTCTGATATTTCACTTTAAAGGCGCATAGGGGTCCGAATTTTTCAAAGTGGGCGGATCTTAATCATGATTATACTCATTTTGAAGCGCGTATGATGAGAAATCGATATGTTAAACTTTCGTTAAGTTTGAAGCAAAACTGGCTGGGTTACGGTAGTTTTTGTAGTTCAACACAGTCAAGAGCT</canonical_amplicon>
		<polymorphic_amplicon>AAGGTTGGCTTTACATTGTGCTTTCGGGTGATGAAATCGACGACTGCGAGGATTGTGGAGTTCTGAAAAGTTGAGAATTGAGTTTCTCGCGTTAAGAGCTTCAAAAGGAGGATAAACATGCCTAGGCTCCGCCTCTTCTGATATTTCACTTTAAAGGCGCATAGGGGTCCGAATTTTTCAAAGTGGGCGGATCTTAATYATGATTATACTCATTTTGAAGCGCGTATGATGAGAAATCGATATGTTAAACTTTCGTTAAGTTTGAAGCAAAACTGGCTGGGTTACGGTAGTTTTTGTAGTTCAACACAGTCAAGAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29508</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>124861</contig_pos>
        <strand></strand>
        <context>tcgatatgtt[A/T]aactttcgtt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCATGATTATACTCATTTTGAAGCGCGTATGATGAGAAATCGATATGTT</left_flank>
        <right_flank>AACTTTCGTTAAGTTTGAAGCAAAACTGGCTGGGTTACGGTAGTTTTTGT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACCGTAACCCTGACTCTTTTCGTCGTCGGTGCCAAACTTATCACATCCACAGAAATATTGGTCGTTGCCAGGACAACATCTCCTTGCTGCGCTTCGACTACAAATTTATAGAGACCTCCTTCGGTTTTCGAAATTTCCACGTTGGCATTTGGTCGGAGGATTACTGTAGCCTTGTAAACATCTGCATTGTCGGCGCGAGTCTTTTCAATGTTTCCAATATCGAACCATTCATTTTCGTCAAAATTCACAATGAAGGTTGGCTTTACATTGTGCTTTCGGGTGATGAAATCGACGACTGCGAGGATTGTGGAGTTCTGAAAAGTTGAGAATTGAGTTTCTCGCGTTAAGAGCTTCAAAAGGAGGATAAACATGCCTAGGCTCCGCCTCTTCTGATATTTCACTTTAAAGGCGCATAGGGGTCCGAATTTTTCAAAGTGGGCGGATCTTAATCATGATTATACTCATTTTGAAGCGCGTATGATGAGAAATCGATATGTTAAACTTTCGTTAAGTTTGAAGCAAAACTGGCTGGGTTACGGTAGTTTTTGTAGTTCAACACAGTCAAGAGCTCACCTCATTATTCCCCTCTGGCAACATGAAATCATAGGACGGCTGATCGAACTTGTCTGGAATTGACGTGGCGTCTCCAACAACTTCTGAGGACGAATCCGACGATTTTGATGGCGTTTCGTCACGACGGACCACGAACTGAAATTAGAAAATTTATATAATTCAAGTATTGAGCTCAATTATTTTGGTTATTTAGAAAAATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATAATATCAACAATATTTCATAAATTCACAAATATTTGATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGAGAGGTATCGAAAGGTGGTAAACCGCTATTGCTTCCATAGAACGTTCACTTTGAGCTCAATCATCTCGGCTATTTTAAGAGATATCAAAAATCTGTTAACTAATAAAATGTTTATCATA</canonical>
            <polymorphic>TACCGTAACCCTGACTCTTTTCGTCGTCGGTGCCAAACTTATCACATCCACAGAAATATTGGTCGTTGCCAGGACAACATCTCCTTGCTGCGCTTCGACTACAAATTTATAGAGACCTCCTTCGGTTTTCGAAATTTCCACGTTGGCATTTGGTCGGAGGATTACTGTAGCCTTGTAAACATCTGCATTGTCGGCGCGAGTCTTTTCAATGTTTCCAATATCGAACCATTCATTTTCGTCAAAATTCACAATGAAGGTTGGCTTTACATTGTGCTTTCGGGTGATGAAATCGACGACTGCGAGGATTGTGGAGTTCTGAAAAGTTGAGAATTGAGTTTCTCGCGTTAAGAGCTTCAAAAGGAGGATAAACATGCCTAGGCTCCGCCTCTTCTGATATTTCACTTTAAAGGCGCATAGGGGTCCGAATTTTTCAAAGTGGGCGGATCTTAATCATGATTATACTCATTTTGAAGCGCGTATGATGAGAAATCGATATGTTWAACTTTCGTTAAGTTTGAAGCAAAACTGGCTGGGTTACGGTAGTTTTTGTAGTTCAACACAGTCAAGAGCTCACCTCATTATTCCCCTCTGGCAACATGAAATCATAGGACGGCTGATCGAACTTGTCTGGAATTGACGTGGCGTCTCCAACAACTTCTGAGGACGAATCCGACGATTTTGATGGCGTTTCGTCACGACGGACCACGAACTGAAATTAGAAAATTTATATAATTCAAGTATTGAGCTCAATTATTTTGGTTATTTAGAAAAATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATAATATCAACAATATTTCATAAATTCACAAATATTTGATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGAGAGGTATCGAAAGGTGGTAAACCGCTATTGCTTCCATAGAACGTTCACTTTGAGCTCAATCATCTCGGCTATTTTAAGAGATATCAAAAATCTGTTAACTAATAAAATGTTTATCATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>447 345 59 51 43 23 21 11</canonical_bands>
                <polymorphic_bands>447 345 62 59 43 23 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGTTGGCTTTACATTGTG</pcr_primer_p1>
		<pcr_primer_p2>AGCTCTTGACTGTGTTGAACTA</pcr_primer_p2>
		<pcr_amplicon_size>318</pcr_amplicon_size>
		<canonical_amplicon>AAGGTTGGCTTTACATTGTGCTTTCGGGTGATGAAATCGACGACTGCGAGGATTGTGGAGTTCTGAAAAGTTGAGAATTGAGTTTCTCGCGTTAAGAGCTTCAAAAGGAGGATAAACATGCCTAGGCTCCGCCTCTTCTGATATTTCACTTTAAAGGCGCATAGGGGTCCGAATTTTTCAAAGTGGGCGGATCTTAATCATGATTATACTCATTTTGAAGCGCGTATGATGAGAAATCGATATGTTAAACTTTCGTTAAGTTTGAAGCAAAACTGGCTGGGTTACGGTAGTTTTTGTAGTTCAACACAGTCAAGAGCT</canonical_amplicon>
		<polymorphic_amplicon>AAGGTTGGCTTTACATTGTGCTTTCGGGTGATGAAATCGACGACTGCGAGGATTGTGGAGTTCTGAAAAGTTGAGAATTGAGTTTCTCGCGTTAAGAGCTTCAAAAGGAGGATAAACATGCCTAGGCTCCGCCTCTTCTGATATTTCACTTTAAAGGCGCATAGGGGTCCGAATTTTTCAAAGTGGGCGGATCTTAATCATGATTATACTCATTTTGAAGCGCGTATGATGAGAAATCGATATGTTWAACTTTCGTTAAGTTTGAAGCAAAACTGGCTGGGTTACGGTAGTTTTTGTAGTTCAACACAGTCAAGAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29509</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>124872</contig_pos>
        <strand></strand>
        <context>aactttcgtt[A/T]agtttgaagc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTCATTTTGAAGCGCGTATGATGAGAAATCGATATGTTAAACTTTCGTT</left_flank>
        <right_flank>AGTTTGAAGCAAAACTGGCTGGGTTACGGTAGTTTTTGTAGTTCAACACA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACTCTTTTCGTCGTCGGTGCCAAACTTATCACATCCACAGAAATATTGGTCGTTGCCAGGACAACATCTCCTTGCTGCGCTTCGACTACAAATTTATAGAGACCTCCTTCGGTTTTCGAAATTTCCACGTTGGCATTTGGTCGGAGGATTACTGTAGCCTTGTAAACATCTGCATTGTCGGCGCGAGTCTTTTCAATGTTTCCAATATCGAACCATTCATTTTCGTCAAAATTCACAATGAAGGTTGGCTTTACATTGTGCTTTCGGGTGATGAAATCGACGACTGCGAGGATTGTGGAGTTCTGAAAAGTTGAGAATTGAGTTTCTCGCGTTAAGAGCTTCAAAAGGAGGATAAACATGCCTAGGCTCCGCCTCTTCTGATATTTCACTTTAAAGGCGCATAGGGGTCCGAATTTTTCAAAGTGGGCGGATCTTAATCATGATTATACTCATTTTGAAGCGCGTATGATGAGAAATCGATATGTTAAACTTTCGTTAAGTTTGAAGCAAAACTGGCTGGGTTACGGTAGTTTTTGTAGTTCAACACAGTCAAGAGCTCACCTCATTATTCCCCTCTGGCAACATGAAATCATAGGACGGCTGATCGAACTTGTCTGGAATTGACGTGGCGTCTCCAACAACTTCTGAGGACGAATCCGACGATTTTGATGGCGTTTCGTCACGACGGACCACGAACTGAAATTAGAAAATTTATATAATTCAAGTATTGAGCTCAATTATTTTGGTTATTTAGAAAAATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATAATATCAACAATATTTCATAAATTCACAAATATTTGATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGAGAGGTATCGAAAGGTGGTAAACCGCTATTGCTTCCATAGAACGTTCACTTTGAGCTCAATCATCTCGGCTATTTTAAGAGATATCAAAAATCTGTTAACTAATAAAATGTTTATCATAACATGATCCAT</canonical>
            <polymorphic>TGACTCTTTTCGTCGTCGGTGCCAAACTTATCACATCCACAGAAATATTGGTCGTTGCCAGGACAACATCTCCTTGCTGCGCTTCGACTACAAATTTATAGAGACCTCCTTCGGTTTTCGAAATTTCCACGTTGGCATTTGGTCGGAGGATTACTGTAGCCTTGTAAACATCTGCATTGTCGGCGCGAGTCTTTTCAATGTTTCCAATATCGAACCATTCATTTTCGTCAAAATTCACAATGAAGGTTGGCTTTACATTGTGCTTTCGGGTGATGAAATCGACGACTGCGAGGATTGTGGAGTTCTGAAAAGTTGAGAATTGAGTTTCTCGCGTTAAGAGCTTCAAAAGGAGGATAAACATGCCTAGGCTCCGCCTCTTCTGATATTTCACTTTAAAGGCGCATAGGGGTCCGAATTTTTCAAAGTGGGCGGATCTTAATCATGATTATACTCATTTTGAAGCGCGTATGATGAGAAATCGATATGTTAAACTTTCGTTWAGTTTGAAGCAAAACTGGCTGGGTTACGGTAGTTTTTGTAGTTCAACACAGTCAAGAGCTCACCTCATTATTCCCCTCTGGCAACATGAAATCATAGGACGGCTGATCGAACTTGTCTGGAATTGACGTGGCGTCTCCAACAACTTCTGAGGACGAATCCGACGATTTTGATGGCGTTTCGTCACGACGGACCACGAACTGAAATTAGAAAATTTATATAATTCAAGTATTGAGCTCAATTATTTTGGTTATTTAGAAAAATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATAATATCAACAATATTTCATAAATTCACAAATATTTGATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGAGAGGTATCGAAAGGTGGTAAACCGCTATTGCTTCCATAGAACGTTCACTTTGAGCTCAATCATCTCGGCTATTTTAAGAGATATCAAAAATCTGTTAACTAATAAAATGTTTATCATAACATGATCCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>447 334 59 51 43 34 21 11</canonical_bands>
                <polymorphic_bands>458 334 59 51 43 34 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGTTGGCTTTACATTGTG</pcr_primer_p1>
		<pcr_primer_p2>AGCTCTTGACTGTGTTGAACTA</pcr_primer_p2>
		<pcr_amplicon_size>318</pcr_amplicon_size>
		<canonical_amplicon>AAGGTTGGCTTTACATTGTGCTTTCGGGTGATGAAATCGACGACTGCGAGGATTGTGGAGTTCTGAAAAGTTGAGAATTGAGTTTCTCGCGTTAAGAGCTTCAAAAGGAGGATAAACATGCCTAGGCTCCGCCTCTTCTGATATTTCACTTTAAAGGCGCATAGGGGTCCGAATTTTTCAAAGTGGGCGGATCTTAATCATGATTATACTCATTTTGAAGCGCGTATGATGAGAAATCGATATGTTAAACTTTCGTTAAGTTTGAAGCAAAACTGGCTGGGTTACGGTAGTTTTTGTAGTTCAACACAGTCAAGAGCT</canonical_amplicon>
		<polymorphic_amplicon>AAGGTTGGCTTTACATTGTGCTTTCGGGTGATGAAATCGACGACTGCGAGGATTGTGGAGTTCTGAAAAGTTGAGAATTGAGTTTCTCGCGTTAAGAGCTTCAAAAGGAGGATAAACATGCCTAGGCTCCGCCTCTTCTGATATTTCACTTTAAAGGCGCATAGGGGTCCGAATTTTTCAAAGTGGGCGGATCTTAATCATGATTATACTCATTTTGAAGCGCGTATGATGAGAAATCGATATGTTAAACTTTCGTTWAGTTTGAAGCAAAACTGGCTGGGTTACGGTAGTTTTTGTAGTTCAACACAGTCAAGAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29510</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>124902</contig_pos>
        <strand>+</strand>
        <context>tgggttacgg[A/C]agttttTGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGATATGTTAAACTTTCGTTAAGTTTGAAGCAAAACTGGCTGGGTTACGG</left_flank>
        <right_flank>AGTTTTTGTAGTTCAACACAGTCAAGAGCTCACCTCATTATTCCCCTCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACATCCACAGAAATATTGGTCGTTGCCAGGACAACATCTCCTTGCTGCGCTTCGACTACAAATTTATAGAGACCTCCTTCGGTTTTCGAAATTTCCACGTTGGCATTTGGTCGGAGGATTACTGTAGCCTTGTAAACATCTGCATTGTCGGCGCGAGTCTTTTCAATGTTTCCAATATCGAACCATTCATTTTCGTCAAAATTCACAATGAAGGTTGGCTTTACATTGTGCTTTCGGGTGATGAAATCGACGACTGCGAGGATTGTGGAGTTCTGAAAAGTTGAGAATTGAGTTTCTCGCGTTAAGAGCTTCAAAAGGAGGATAAACATGCCTAGGCTCCGCCTCTTCTGATATTTCACTTTAAAGGCGCATAGGGGTCCGAATTTTTCAAAGTGGGCGGATCTTAATCATGATTATACTCATTTTGAAGCGCGTATGATGAGAAATCGATATGTTAAACTTTCGTTAAGTTTGAAGCAAAACTGGCTGGGTTACGGTAGTTTTTGTAGTTCAACACAGTCAAGAGCTCACCTCATTATTCCCCTCTGGCAACATGAAATCATAGGACGGCTGATCGAACTTGTCTGGAATTGACGTGGCGTCTCCAACAACTTCTGAGGACGAATCCGACGATTTTGATGGCGTTTCGTCACGACGGACCACGAACTGAAATTAGAAAATTTATATAATTCAAGTATTGAGCTCAATTATTTTGGTTATTTAGAAAAATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATAATATCAACAATATTTCATAAATTCACAAATATTTGATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGAGAGGTATCGAAAGGTGGTAAACCGCTATTGCTTCCATAGAACGTTCACTTTGAGCTCAATCATCTCGGCTATTTTAAGAGATATCAAAAATCTGTTAACTAATAAAATGTTTATCATAACATGATCCATATTTTATCAGTTAGCAATTTTTTCATATCT</canonical>
            <polymorphic>TCACATCCACAGAAATATTGGTCGTTGCCAGGACAACATCTCCTTGCTGCGCTTCGACTACAAATTTATAGAGACCTCCTTCGGTTTTCGAAATTTCCACGTTGGCATTTGGTCGGAGGATTACTGTAGCCTTGTAAACATCTGCATTGTCGGCGCGAGTCTTTTCAATGTTTCCAATATCGAACCATTCATTTTCGTCAAAATTCACAATGAAGGTTGGCTTTACATTGTGCTTTCGGGTGATGAAATCGACGACTGCGAGGATTGTGGAGTTCTGAAAAGTTGAGAATTGAGTTTCTCGCGTTAAGAGCTTCAAAAGGAGGATAAACATGCCTAGGCTCCGCCTCTTCTGATATTTCACTTTAAAGGCGCATAGGGGTCCGAATTTTTCAAAGTGGGCGGATCTTAATCATGATTATACTCATTTTGAAGCGCGTATGATGAGAAATCGATATGTTAAACTTTCGTTAAGTTTGAAGCAAAACTGGCTGGGTTACGGMAGTTTTTGTAGTTCAACACAGTCAAGAGCTCACCTCATTATTCCCCTCTGGCAACATGAAATCATAGGACGGCTGATCGAACTTGTCTGGAATTGACGTGGCGTCTCCAACAACTTCTGAGGACGAATCCGACGATTTTGATGGCGTTTCGTCACGACGGACCACGAACTGAAATTAGAAAATTTATATAATTCAAGTATTGAGCTCAATTATTTTGGTTATTTAGAAAAATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATAATATCAACAATATTTCATAAATTCACAAATATTTGATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGAGAGGTATCGAAAGGTGGTAAACCGCTATTGCTTCCATAGAACGTTCACTTTGAGCTCAATCATCTCGGCTATTTTAAGAGATATCAAAAATCTGTTAACTAATAAAATGTTTATCATAACATGATCCATATTTTATCAGTTAGCAATTTTTTCATATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>373 295 185 125 22</canonical_bands>
                <polymorphic_bands>395 295 185 125</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGTTGGCTTTACATTGTG</pcr_primer_p1>
		<pcr_primer_p2>TATGATTTCATGTTGCCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>354</pcr_amplicon_size>
		<canonical_amplicon>AAGGTTGGCTTTACATTGTGCTTTCGGGTGATGAAATCGACGACTGCGAGGATTGTGGAGTTCTGAAAAGTTGAGAATTGAGTTTCTCGCGTTAAGAGCTTCAAAAGGAGGATAAACATGCCTAGGCTCCGCCTCTTCTGATATTTCACTTTAAAGGCGCATAGGGGTCCGAATTTTTCAAAGTGGGCGGATCTTAATCATGATTATACTCATTTTGAAGCGCGTATGATGAGAAATCGATATGTTAAACTTTCGTTAAGTTTGAAGCAAAACTGGCTGGGTTACGGTAGTTTTTGTAGTTCAACACAGTCAAGAGCTCACCTCATTATTCCCCTCTGGCAACATGAAATCATA</canonical_amplicon>
		<polymorphic_amplicon>AAGGTTGGCTTTACATTGTGCTTTCGGGTGATGAAATCGACGACTGCGAGGATTGTGGAGTTCTGAAAAGTTGAGAATTGAGTTTCTCGCGTTAAGAGCTTCAAAAGGAGGATAAACATGCCTAGGCTCCGCCTCTTCTGATATTTCACTTTAAAGGCGCATAGGGGTCCGAATTTTTCAAAGTGGGCGGATCTTAATCATGATTATACTCATTTTGAAGCGCGTATGATGAGAAATCGATATGTTAAACTTTCGTTAAGTTTGAAGCAAAACTGGCTGGGTTACGGMAGTTTTTGTAGTTCAACACAGTCAAGAGCTCACCTCATTATTCCCCTCTGGCAACATGAAATCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29511</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>125263</contig_pos>
        <strand>+</strand>
        <context>AAAGGTGGTA[A/T]ACCGCTATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTACAGTAACCGAGATAATTGAGCTCAAAGAGAGGTATCGAAAGGTGGTA</left_flank>
        <right_flank>ACCGCTATTGCTTCCATAGAACGTTCACTTTGAGCTCAATCATCTCGGCT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAAAGGCGCATAGGGGTCCGAATTTTTCAAAGTGGGCGGATCTTAATCATGATTATACTCATTTTGAAGCGCGTATGATGAGAAATCGATATGTTAAACTTTCGTTAAGTTTGAAGCAAAACTGGCTGGGTTACGGTAGTTTTTGTAGTTCAACACAGTCAAGAGCTCACCTCATTATTCCCCTCTGGCAACATGAAATCATAGGACGGCTGATCGAACTTGTCTGGAATTGACGTGGCGTCTCCAACAACTTCTGAGGACGAATCCGACGATTTTGATGGCGTTTCGTCACGACGGACCACGAACTGAAATTAGAAAATTTATATAATTCAAGTATTGAGCTCAATTATTTTGGTTATTTAGAAAAATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATAATATCAACAATATTTCATAAATTCACAAATATTTGATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGAGAGGTATCGAAAGGTGGTAAACCGCTATTGCTTCCATAGAACGTTCACTTTGAGCTCAATCATCTCGGCTATTTTAAGAGATATCAAAAATCTGTTAACTAATAAAATGTTTATCATAACATGATCCATATTTTATCAGTTAGCAATTTTTTCATATCTCAGACAGTAACCGAGATAATTGAGCTCAAAGTTGGTGGTTAGGCTAAGGAGAAAATAAAGTATTCAGAATTTGGAAAATTCACATTATTTTGCAAATTCCATCTTTTTCAAATCTATCCAATTCTCAAAAAATTCGAAATTTCACAAAAAATTTCATTGTTAACCTTATCCGAAGAGAGTCTCTCCAAATTCTTATCATCCTTCTCCAAATGCACAGATCTTCGAATATCCGAGTGCTCGTGAGAGTTCATTATGAACTCCAGCGGGATGTCATGTCGTTTTTGGACGTGTTTTAGCTGAAAATACATTTTTAGAGGTCCATGGATCAAAAAAGAATCTGAAAACTCACCGAATGAACATG</canonical>
            <polymorphic>TTTAAAGGCGCATAGGGGTCCGAATTTTTCAAAGTGGGCGGATCTTAATCATGATTATACTCATTTTGAAGCGCGTATGATGAGAAATCGATATGTTAAACTTTCGTTAAGTTTGAAGCAAAACTGGCTGGGTTACGGTAGTTTTTGTAGTTCAACACAGTCAAGAGCTCACCTCATTATTCCCCTCTGGCAACATGAAATCATAGGACGGCTGATCGAACTTGTCTGGAATTGACGTGGCGTCTCCAACAACTTCTGAGGACGAATCCGACGATTTTGATGGCGTTTCGTCACGACGGACCACGAACTGAAATTAGAAAATTTATATAATTCAAGTATTGAGCTCAATTATTTTGGTTATTTAGAAAAATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATAATATCAACAATATTTCATAAATTCACAAATATTTGATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGAGAGGTATCGAAAGGTGGTAWACCGCTATTGCTTCCATAGAACGTTCACTTTGAGCTCAATCATCTCGGCTATTTTAAGAGATATCAAAAATCTGTTAACTAATAAAATGTTTATCATAACATGATCCATATTTTATCAGTTAGCAATTTTTTCATATCTCAGACAGTAACCGAGATAATTGAGCTCAAAGTTGGTGGTTAGGCTAAGGAGAAAATAAAGTATTCAGAATTTGGAAAATTCACATTATTTTGCAAATTCCATCTTTTTCAAATCTATCCAATTCTCAAAAAATTCGAAATTTCACAAAAAATTTCATTGTTAACCTTATCCGAAGAGAGTCTCTCCAAATTCTTATCATCCTTCTCCAAATGCACAGATCTTCGAATATCCGAGTGCTCGTGAGAGTTCATTATGAACTCCAGCGGGATGTCATGTCGTTTTTGGACGTGTTTTAGCTGAAAATACATTTTTAGAGGTCCATGGATCAAAAAAGAATCTGAAAACTCACCGAATGAACATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCACGAACTGAAATTAGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCCAAATTCTGAATACTTTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>417</pcr_amplicon_size>
		<canonical_amplicon>GACCACGAACTGAAATTAGAAAATTTATATAATTCAAGTATTGAGCTCAATTATTTTGGTTATTTAGAAAAATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATAATATCAACAATATTTCATAAATTCACAAATATTTGATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGAGAGGTATCGAAAGGTGGTAAACCGCTATTGCTTCCATAGAACGTTCACTTTGAGCTCAATCATCTCGGCTATTTTAAGAGATATCAAAAATCTGTTAACTAATAAAATGTTTATCATAACATGATCCATATTTTATCAGTTAGCAATTTTTTCATATCTCAGACAGTAACCGAGATAATTGAGCTCAAAGTTGGTGGTTAGGCTAAGGAGAAAATAAAGTATTCAGAATTTGGAA</canonical_amplicon>
		<polymorphic_amplicon>GACCACGAACTGAAATTAGAAAATTTATATAATTCAAGTATTGAGCTCAATTATTTTGGTTATTTAGAAAAATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATAATATCAACAATATTTCATAAATTCACAAATATTTGATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGAGAGGTATCGAAAGGTGGTAWACCGCTATTGCTTCCATAGAACGTTCACTTTGAGCTCAATCATCTCGGCTATTTTAAGAGATATCAAAAATCTGTTAACTAATAAAATGTTTATCATAACATGATCCATATTTTATCAGTTAGCAATTTTTTCATATCTCAGACAGTAACCGAGATAATTGAGCTCAAAGTTGGTGGTTAGGCTAAGGAGAAAATAAAGTATTCAGAATTTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29512</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>125596</contig_pos>
        <strand>+</strand>
        <context>TCCAAATTCT[C/T]ATCATCCTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAAAAAATTTCATTGTTAACCTTATCCGAAGAGAGTCTCTCCAAATTCT</left_flank>
        <right_flank>ATCATCCTTCTCCAAATGCACAGATCTTCGAATATCCGAGTGCTCGTGAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTATTGAGCTCAATTATTTTGGTTATTTAGAAAAATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATAATATCAACAATATTTCATAAATTCACAAATATTTGATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGAGAGGTATCGAAAGGTGGTAAACCGCTATTGCTTCCATAGAACGTTCACTTTGAGCTCAATCATCTCGGCTATTTTAAGAGATATCAAAAATCTGTTAACTAATAAAATGTTTATCATAACATGATCCATATTTTATCAGTTAGCAATTTTTTCATATCTCAGACAGTAACCGAGATAATTGAGCTCAAAGTTGGTGGTTAGGCTAAGGAGAAAATAAAGTATTCAGAATTTGGAAAATTCACATTATTTTGCAAATTCCATCTTTTTCAAATCTATCCAATTCTCAAAAAATTCGAAATTTCACAAAAAATTTCATTGTTAACCTTATCCGAAGAGAGTCTCTCCAAATTCTTATCATCCTTCTCCAAATGCACAGATCTTCGAATATCCGAGTGCTCGTGAGAGTTCATTATGAACTCCAGCGGGATGTCATGTCGTTTTTGGACGTGTTTTAGCTGAAAATACATTTTTAGAGGTCCATGGATCAAAAAAGAATCTGAAAACTCACCGAATGAACATGAAATTCGCTTGCCAGAATTGTGGAGAATAGGATGAAAATGAGAGATATTTCTCTCATTTTGGAGATTTTTGAGCTCTGAAAATTTTCAGAATTTTGAGAGGAACTTGAGGATCTAAAGATAAAAAACACAAAAATTTTAACCCAATCAAAAAAGAAAAAAGGGACGAAAAAGGTGTGTGTGTGTGTGTGTGTGTGTTCCGCGAGAGAATGTCCTTGAATGCCTGGCGCCTGAAGATTGACCTAATTTACTGGTGGTTATCATTTGGCGCAATCTTGTCGAACAAAAAAAGGTATCCGTTTTTTGTCTTATGTTGATAAAGAACAGATAAAGAA</canonical>
            <polymorphic>AAGTATTGAGCTCAATTATTTTGGTTATTTAGAAAAATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATAATATCAACAATATTTCATAAATTCACAAATATTTGATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGAGAGGTATCGAAAGGTGGTAAACCGCTATTGCTTCCATAGAACGTTCACTTTGAGCTCAATCATCTCGGCTATTTTAAGAGATATCAAAAATCTGTTAACTAATAAAATGTTTATCATAACATGATCCATATTTTATCAGTTAGCAATTTTTTCATATCTCAGACAGTAACCGAGATAATTGAGCTCAAAGTTGGTGGTTAGGCTAAGGAGAAAATAAAGTATTCAGAATTTGGAAAATTCACATTATTTTGCAAATTCCATCTTTTTCAAATCTATCCAATTCTCAAAAAATTCGAAATTTCACAAAAAATTTCATTGTTAACCTTATCCGAAGAGAGTCTCTCCAAATTCTYATCATCCTTCTCCAAATGCACAGATCTTCGAATATCCGAGTGCTCGTGAGAGTTCATTATGAACTCCAGCGGGATGTCATGTCGTTTTTGGACGTGTTTTAGCTGAAAATACATTTTTAGAGGTCCATGGATCAAAAAAGAATCTGAAAACTCACCGAATGAACATGAAATTCGCTTGCCAGAATTGTGGAGAATAGGATGAAAATGAGAGATATTTCTCTCATTTTGGAGATTTTTGAGCTCTGAAAATTTTCAGAATTTTGAGAGGAACTTGAGGATCTAAAGATAAAAAACACAAAAATTTTAACCCAATCAAAAAAGAAAAAAGGGACGAAAAAGGTGTGTGTGTGTGTGTGTGTGTGTTCCGCGAGAGAATGTCCTTGAATGCCTGGCGCCTGAAGATTGACCTAATTTACTGGTGGTTATCATTTGGCGCAATCTTGTCGAACAAAAAAAGGTATCCGTTTTTTGTCTTATGTTGATAAAGAACAGATAAAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAAATCTATCCAATTCTCA</pcr_primer_p1>
		<pcr_primer_p2>ATTCGGTGAGTTTTCAGATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAAATCTATCCAATTCTCAAAAAATTCGAAATTTCACAAAAAATTTCATTGTTAACCTTATCCGAAGAGAGTCTCTCCAAATTCTTATCATCCTTCTCCAAATGCACAGATCTTCGAATATCCGAGTGCTCGTGAGAGTTCATTATGAACTCCAGCGGGATGTCATGTCGTTTTTGGACGTGTTTTAGCTGAAAATACATTTTTAGAGGTCCATGGATCAAAAAAGAATCTGAAAACTCACCGAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAAATCTATCCAATTCTCAAAAAATTCGAAATTTCACAAAAAATTTCATTGTTAACCTTATCCGAAGAGAGTCTCTCCAAATTCTYATCATCCTTCTCCAAATGCACAGATCTTCGAATATCCGAGTGCTCGTGAGAGTTCATTATGAACTCCAGCGGGATGTCATGTCGTTTTTGGACGTGTTTTAGCTGAAAATACATTTTTAGAGGTCCATGGATCAAAAAAGAATCTGAAAACTCACCGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29513</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>125669</contig_pos>
        <strand>+</strand>
        <context>ACTCCAGCGG[A/G]ATGTCATGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATCTTCGAATATCCGAGTGCTCGTGAGAGTTCATTATGAACTCCAGCGG</left_flank>
        <right_flank>ATGTCATGTCGTTTTTGGACGTGTTTTAGCTGAAAATACATTTTTAGAGG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATCAACAATATTTCATAAATTCACAAATATTTGATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGAGAGGTATCGAAAGGTGGTAAACCGCTATTGCTTCCATAGAACGTTCACTTTGAGCTCAATCATCTCGGCTATTTTAAGAGATATCAAAAATCTGTTAACTAATAAAATGTTTATCATAACATGATCCATATTTTATCAGTTAGCAATTTTTTCATATCTCAGACAGTAACCGAGATAATTGAGCTCAAAGTTGGTGGTTAGGCTAAGGAGAAAATAAAGTATTCAGAATTTGGAAAATTCACATTATTTTGCAAATTCCATCTTTTTCAAATCTATCCAATTCTCAAAAAATTCGAAATTTCACAAAAAATTTCATTGTTAACCTTATCCGAAGAGAGTCTCTCCAAATTCTTATCATCCTTCTCCAAATGCACAGATCTTCGAATATCCGAGTGCTCGTGAGAGTTCATTATGAACTCCAGCGGGATGTCATGTCGTTTTTGGACGTGTTTTAGCTGAAAATACATTTTTAGAGGTCCATGGATCAAAAAAGAATCTGAAAACTCACCGAATGAACATGAAATTCGCTTGCCAGAATTGTGGAGAATAGGATGAAAATGAGAGATATTTCTCTCATTTTGGAGATTTTTGAGCTCTGAAAATTTTCAGAATTTTGAGAGGAACTTGAGGATCTAAAGATAAAAAACACAAAAATTTTAACCCAATCAAAAAAGAAAAAAGGGACGAAAAAGGTGTGTGTGTGTGTGTGTGTGTGTTCCGCGAGAGAATGTCCTTGAATGCCTGGCGCCTGAAGATTGACCTAATTTACTGGTGGTTATCATTTGGCGCAATCTTGTCGAACAAAAAAAGGTATCCGTTTTTTGTCTTATGTTGATAAAGAACAGATAAAGAAAAAGATACTTGACCCTAATTAGAGAGGTTCACAGAAGTGATAAAAGATAGTTGATAACTAGTAAAACTTGTCA</canonical>
            <polymorphic>AATATCAACAATATTTCATAAATTCACAAATATTTGATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGAGAGGTATCGAAAGGTGGTAAACCGCTATTGCTTCCATAGAACGTTCACTTTGAGCTCAATCATCTCGGCTATTTTAAGAGATATCAAAAATCTGTTAACTAATAAAATGTTTATCATAACATGATCCATATTTTATCAGTTAGCAATTTTTTCATATCTCAGACAGTAACCGAGATAATTGAGCTCAAAGTTGGTGGTTAGGCTAAGGAGAAAATAAAGTATTCAGAATTTGGAAAATTCACATTATTTTGCAAATTCCATCTTTTTCAAATCTATCCAATTCTCAAAAAATTCGAAATTTCACAAAAAATTTCATTGTTAACCTTATCCGAAGAGAGTCTCTCCAAATTCTTATCATCCTTCTCCAAATGCACAGATCTTCGAATATCCGAGTGCTCGTGAGAGTTCATTATGAACTCCAGCGGRATGTCATGTCGTTTTTGGACGTGTTTTAGCTGAAAATACATTTTTAGAGGTCCATGGATCAAAAAAGAATCTGAAAACTCACCGAATGAACATGAAATTCGCTTGCCAGAATTGTGGAGAATAGGATGAAAATGAGAGATATTTCTCTCATTTTGGAGATTTTTGAGCTCTGAAAATTTTCAGAATTTTGAGAGGAACTTGAGGATCTAAAGATAAAAAACACAAAAATTTTAACCCAATCAAAAAAGAAAAAAGGGACGAAAAAGGTGTGTGTGTGTGTGTGTGTGTGTTCCGCGAGAGAATGTCCTTGAATGCCTGGCGCCTGAAGATTGACCTAATTTACTGGTGGTTATCATTTGGCGCAATCTTGTCGAACAAAAAAAGGTATCCGTTTTTTGTCTTATGTTGATAAAGAACAGATAAAGAAAAAGATACTTGACCCTAATTAGAGAGGTTCACAGAAGTGATAAAAGATAGTTGATAACTAGTAAAACTTGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTAACCTTATCCGAAGAGAGTC</pcr_primer_p1>
		<pcr_primer_p2>TCTCTCATTTTCATCCTATTCTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTAACCTTATCCGAAGAGAGTCTCTCCAAATTCTTATCATCCTTCTCCAAATGCACAGATCTTCGAATATCCGAGTGCTCGTGAGAGTTCATTATGAACTCCAGCGGGATGTCATGTCGTTTTTGGACGTGTTTTAGCTGAAAATACATTTTTAGAGGTCCATGGATCAAAAAAGAATCTGAAAACTCACCGAATGAACATGAAATTCGCTTGCCAGAATTGTGGAGAATAGGATGAAAATGAGAGA</canonical_amplicon>
		<polymorphic_amplicon>GTTAACCTTATCCGAAGAGAGTCTCTCCAAATTCTTATCATCCTTCTCCAAATGCACAGATCTTCGAATATCCGAGTGCTCGTGAGAGTTCATTATGAACTCCAGCGGRATGTCATGTCGTTTTTGGACGTGTTTTAGCTGAAAATACATTTTTAGAGGTCCATGGATCAAAAAAGAATCTGAAAACTCACCGAATGAACATGAAATTCGCTTGCCAGAATTGTGGAGAATAGGATGAAAATGAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29514</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>125717</contig_pos>
        <strand>+</strand>
        <context>ACATTTTTAG[A/G]GGTCCATGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGATGTCATGTCGTTTTTGGACGTGTTTTAGCTGAAAATACATTTTTAG</left_flank>
        <right_flank>GGTCCATGGATCAAAAAAGAATCTGAAAACTCACCGAATGAACATGAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAACCGAGATAATTGAGCTCAAAGAGAGGTATCGAAAGGTGGTAAACCGCTATTGCTTCCATAGAACGTTCACTTTGAGCTCAATCATCTCGGCTATTTTAAGAGATATCAAAAATCTGTTAACTAATAAAATGTTTATCATAACATGATCCATATTTTATCAGTTAGCAATTTTTTCATATCTCAGACAGTAACCGAGATAATTGAGCTCAAAGTTGGTGGTTAGGCTAAGGAGAAAATAAAGTATTCAGAATTTGGAAAATTCACATTATTTTGCAAATTCCATCTTTTTCAAATCTATCCAATTCTCAAAAAATTCGAAATTTCACAAAAAATTTCATTGTTAACCTTATCCGAAGAGAGTCTCTCCAAATTCTTATCATCCTTCTCCAAATGCACAGATCTTCGAATATCCGAGTGCTCGTGAGAGTTCATTATGAACTCCAGCGGGATGTCATGTCGTTTTTGGACGTGTTTTAGCTGAAAATACATTTTTAGAGGTCCATGGATCAAAAAAGAATCTGAAAACTCACCGAATGAACATGAAATTCGCTTGCCAGAATTGTGGAGAATAGGATGAAAATGAGAGATATTTCTCTCATTTTGGAGATTTTTGAGCTCTGAAAATTTTCAGAATTTTGAGAGGAACTTGAGGATCTAAAGATAAAAAACACAAAAATTTTAACCCAATCAAAAAAGAAAAAAGGGACGAAAAAGGTGTGTGTGTGTGTGTGTGTGTGTTCCGCGAGAGAATGTCCTTGAATGCCTGGCGCCTGAAGATTGACCTAATTTACTGGTGGTTATCATTTGGCGCAATCTTGTCGAACAAAAAAAGGTATCCGTTTTTTGTCTTATGTTGATAAAGAACAGATAAAGAAAAAGATACTTGACCCTAATTAGAGAGGTTCACAGAAGTGATAAAAGATAGTTGATAACTAGTAAAACTTGTCAAACACCTGTAACTTTGAGCCGTTTTATCTCGTTCCGGCTAAAGATATA</canonical>
            <polymorphic>GTAACCGAGATAATTGAGCTCAAAGAGAGGTATCGAAAGGTGGTAAACCGCTATTGCTTCCATAGAACGTTCACTTTGAGCTCAATCATCTCGGCTATTTTAAGAGATATCAAAAATCTGTTAACTAATAAAATGTTTATCATAACATGATCCATATTTTATCAGTTAGCAATTTTTTCATATCTCAGACAGTAACCGAGATAATTGAGCTCAAAGTTGGTGGTTAGGCTAAGGAGAAAATAAAGTATTCAGAATTTGGAAAATTCACATTATTTTGCAAATTCCATCTTTTTCAAATCTATCCAATTCTCAAAAAATTCGAAATTTCACAAAAAATTTCATTGTTAACCTTATCCGAAGAGAGTCTCTCCAAATTCTTATCATCCTTCTCCAAATGCACAGATCTTCGAATATCCGAGTGCTCGTGAGAGTTCATTATGAACTCCAGCGGGATGTCATGTCGTTTTTGGACGTGTTTTAGCTGAAAATACATTTTTAGRGGTCCATGGATCAAAAAAGAATCTGAAAACTCACCGAATGAACATGAAATTCGCTTGCCAGAATTGTGGAGAATAGGATGAAAATGAGAGATATTTCTCTCATTTTGGAGATTTTTGAGCTCTGAAAATTTTCAGAATTTTGAGAGGAACTTGAGGATCTAAAGATAAAAAACACAAAAATTTTAACCCAATCAAAAAAGAAAAAAGGGACGAAAAAGGTGTGTGTGTGTGTGTGTGTGTGTTCCGCGAGAGAATGTCCTTGAATGCCTGGCGCCTGAAGATTGACCTAATTTACTGGTGGTTATCATTTGGCGCAATCTTGTCGAACAAAAAAAGGTATCCGTTTTTTGTCTTATGTTGATAAAGAACAGATAAAGAAAAAGATACTTGACCCTAATTAGAGAGGTTCACAGAAGTGATAAAAGATAGTTGATAACTAGTAAAACTTGTCAAACACCTGTAACTTTGAGCCGTTTTATCTCGTTCCGGCTAAAGATATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTAACCTTATCCGAAGAGAGTC</pcr_primer_p1>
		<pcr_primer_p2>TCTCTCATTTTCATCCTATTCTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTAACCTTATCCGAAGAGAGTCTCTCCAAATTCTTATCATCCTTCTCCAAATGCACAGATCTTCGAATATCCGAGTGCTCGTGAGAGTTCATTATGAACTCCAGCGGGATGTCATGTCGTTTTTGGACGTGTTTTAGCTGAAAATACATTTTTAGAGGTCCATGGATCAAAAAAGAATCTGAAAACTCACCGAATGAACATGAAATTCGCTTGCCAGAATTGTGGAGAATAGGATGAAAATGAGAGA</canonical_amplicon>
		<polymorphic_amplicon>GTTAACCTTATCCGAAGAGAGTCTCTCCAAATTCTTATCATCCTTCTCCAAATGCACAGATCTTCGAATATCCGAGTGCTCGTGAGAGTTCATTATGAACTCCAGCGGGATGTCATGTCGTTTTTGGACGTGTTTTAGCTGAAAATACATTTTTAGRGGTCCATGGATCAAAAAAGAATCTGAAAACTCACCGAATGAACATGAAATTCGCTTGCCAGAATTGTGGAGAATAGGATGAAAATGAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29515</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>127681</contig_pos>
        <strand>+</strand>
        <context>AGAACCAATA[C/T]TGATGAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTGAGAACCCGCTCTGCCGAACTGTTCATAGTGCTCTATAGAACCAATA</left_flank>
        <right_flank>TGATGAAAATACAGCAAACACGCTCTATCGATCATCTCGAAATGGAAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGACAATACTAATTTCATAATTTCCAACAACTGCTAGGGACCATTCTTGAAAAAGTCGATGAATCCGAGATTCGCTGGATTTTCACGGACTGAAAATAATTCTGAATTTTGGGGATTTCGAGAATTTTCTAGTAAGCTTACTGTTGAATCGTTACGCTTGATGGACCATTTCGAAGATTGGTGTCACAGAGAGGAGAATTTAGAGAAAGATTGATTTTTTGACGGTTTCGTGGCTATTTATGGGGAAAAGTTGGGGGAAAAAACAAGGTTTTGGGGTTTTCAGAATGTCACGAGGATACGAAATTCTGGAAAAAAAATCGTGAAAAAATTGGAATTATTCTAGTTGGACTCGGTCATTTTCTTGTCAATTTTGGCGTCAAATTTTCTAGGTGAGAAAGTGCGCTCTATTGAGAATCTAGTGGAAATTCAAACATGCTCTACTGGCAAGTTGAGAACCCGCTCTGCCGAACTGTTCATAGTGCTCTATAGAACCAATACTGATGAAAATACAGCAAACACGCTCTATCGATCATCTCGAAATGGAAGTTCAAATAATGGTAGAAAAGAAATGCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATACGCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATAAAATACAGCAAATACGCTCTACCGAACTTTCTAAGGGAAAGGCGCTCTATAGCGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATCAAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAATACGCTCTGCCGAACGTTCTAAGCGAAAATTCGCTCTATAGAAAAAATACAGCGAACACCCTCTGTCGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATACAGCAAACATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCTAGTTTTAATAAAATACAGCGAAC</canonical>
            <polymorphic>GTTGACAATACTAATTTCATAATTTCCAACAACTGCTAGGGACCATTCTTGAAAAAGTCGATGAATCCGAGATTCGCTGGATTTTCACGGACTGAAAATAATTCTGAATTTTGGGGATTTCGAGAATTTTCTAGTAAGCTTACTGTTGAATCGTTACGCTTGATGGACCATTTCGAAGATTGGTGTCACAGAGAGGAGAATTTAGAGAAAGATTGATTTTTTGACGGTTTCGTGGCTATTTATGGGGAAAAGTTGGGGGAAAAAACAAGGTTTTGGGGTTTTCAGAATGTCACGAGGATACGAAATTCTGGAAAAAAAATCGTGAAAAAATTGGAATTATTCTAGTTGGACTCGGTCATTTTCTTGTCAATTTTGGCGTCAAATTTTCTAGGTGAGAAAGTGCGCTCTATTGAGAATCTAGTGGAAATTCAAACATGCTCTACTGGCAAGTTGAGAACCCGCTCTGCCGAACTGTTCATAGTGCTCTATAGAACCAATAYTGATGAAAATACAGCAAACACGCTCTATCGATCATCTCGAAATGGAAGTTCAAATAATGGTAGAAAAGAAATGCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATACGCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATAAAATACAGCAAATACGCTCTACCGAACTTTCTAAGGGAAAGGCGCTCTATAGCGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATCAAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAATACGCTCTGCCGAACGTTCTAAGCGAAAATTCGCTCTATAGAAAAAATACAGCGAACACCCTCTGTCGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATACAGCAAACATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCTAGTTTTAATAAAATACAGCGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTTCTAGGTGAGAAAGTGC</pcr_primer_p1>
		<pcr_primer_p2>GTATTTGCAATGTTCAGTAGAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTTTCTAGGTGAGAAAGTGCGCTCTATTGAGAATCTAGTGGAAATTCAAACATGCTCTACTGGCAAGTTGAGAACCCGCTCTGCCGAACTGTTCATAGTGCTCTATAGAACCAATACTGATGAAAATACAGCAAACACGCTCTATCGATCATCTCGAAATGGAAGTTCAAATAATGGTAGAAAAGAAATGCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATAC</canonical_amplicon>
		<polymorphic_amplicon>AAATTTTCTAGGTGAGAAAGTGCGCTCTATTGAGAATCTAGTGGAAATTCAAACATGCTCTACTGGCAAGTTGAGAACCCGCTCTGCCGAACTGTTCATAGTGCTCTATAGAACCAATAYTGATGAAAATACAGCAAACACGCTCTATCGATCATCTCGAAATGGAAGTTCAAATAATGGTAGAAAAGAAATGCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29516</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>127715</contig_pos>
        <strand>+</strand>
        <context>TCTATCGATC[A/T]TCTCGAAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCTATAGAACCAATACTGATGAAAATACAGCAAACACGCTCTATCGATC</left_flank>
        <right_flank>TCTCGAAATGGAAGTTCAAATAATGGTAGAAAAGAAATGCGCTCTATTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTAGGGACCATTCTTGAAAAAGTCGATGAATCCGAGATTCGCTGGATTTTCACGGACTGAAAATAATTCTGAATTTTGGGGATTTCGAGAATTTTCTAGTAAGCTTACTGTTGAATCGTTACGCTTGATGGACCATTTCGAAGATTGGTGTCACAGAGAGGAGAATTTAGAGAAAGATTGATTTTTTGACGGTTTCGTGGCTATTTATGGGGAAAAGTTGGGGGAAAAAACAAGGTTTTGGGGTTTTCAGAATGTCACGAGGATACGAAATTCTGGAAAAAAAATCGTGAAAAAATTGGAATTATTCTAGTTGGACTCGGTCATTTTCTTGTCAATTTTGGCGTCAAATTTTCTAGGTGAGAAAGTGCGCTCTATTGAGAATCTAGTGGAAATTCAAACATGCTCTACTGGCAAGTTGAGAACCCGCTCTGCCGAACTGTTCATAGTGCTCTATAGAACCAATACTGATGAAAATACAGCAAACACGCTCTATCGATCATCTCGAAATGGAAGTTCAAATAATGGTAGAAAAGAAATGCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATACGCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATAAAATACAGCAAATACGCTCTACCGAACTTTCTAAGGGAAAGGCGCTCTATAGCGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATCAAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAATACGCTCTGCCGAACGTTCTAAGCGAAAATTCGCTCTATAGAAAAAATACAGCGAACACCCTCTGTCGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATACAGCAAACATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCTAGTTTTAATAAAATACAGCGAACACGCTCTGTCGAACTTTTTAAACGAAAATGCGTT</canonical>
            <polymorphic>GCTAGGGACCATTCTTGAAAAAGTCGATGAATCCGAGATTCGCTGGATTTTCACGGACTGAAAATAATTCTGAATTTTGGGGATTTCGAGAATTTTCTAGTAAGCTTACTGTTGAATCGTTACGCTTGATGGACCATTTCGAAGATTGGTGTCACAGAGAGGAGAATTTAGAGAAAGATTGATTTTTTGACGGTTTCGTGGCTATTTATGGGGAAAAGTTGGGGGAAAAAACAAGGTTTTGGGGTTTTCAGAATGTCACGAGGATACGAAATTCTGGAAAAAAAATCGTGAAAAAATTGGAATTATTCTAGTTGGACTCGGTCATTTTCTTGTCAATTTTGGCGTCAAATTTTCTAGGTGAGAAAGTGCGCTCTATTGAGAATCTAGTGGAAATTCAAACATGCTCTACTGGCAAGTTGAGAACCCGCTCTGCCGAACTGTTCATAGTGCTCTATAGAACCAATACTGATGAAAATACAGCAAACACGCTCTATCGATCWTCTCGAAATGGAAGTTCAAATAATGGTAGAAAAGAAATGCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATACGCTCCACCGAAATTCAAATGTAAACGCGCTTTCCTGAGCTAATTTTAATAAAATACAGCAAATACGCTCTACCGAACTTTCTAAGGGAAAGGCGCTCTATAGCGGCAGTGCAGCAAATACGGTCTTCCGAACTCTCCAATCAAAATGCGCTCTACCGAGCTATTCTGATTAGTTTTGAGAAAATACCACAAATACGCTCTGCCGAACGTTCTAAGCGAAAATTCGCTCTATAGAAAAAATACAGCGAACACCCTCTGTCGAACTTTCTAAACGAAAACGCGCTCTATAGAGAAAATACAGCAAACATGCTCTACCGAACTTCAAATGTAAACGTGCTCTTATGAGCTAGTTTTAATAAAATACAGCGAACACGCTCTGTCGAACTTTTTAAACGAAAATGCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTTCTAGGTGAGAAAGTGC</pcr_primer_p1>
		<pcr_primer_p2>GTATTTGCAATGTTCAGTAGAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTTTCTAGGTGAGAAAGTGCGCTCTATTGAGAATCTAGTGGAAATTCAAACATGCTCTACTGGCAAGTTGAGAACCCGCTCTGCCGAACTGTTCATAGTGCTCTATAGAACCAATACTGATGAAAATACAGCAAACACGCTCTATCGATCATCTCGAAATGGAAGTTCAAATAATGGTAGAAAAGAAATGCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATAC</canonical_amplicon>
		<polymorphic_amplicon>AAATTTTCTAGGTGAGAAAGTGCGCTCTATTGAGAATCTAGTGGAAATTCAAACATGCTCTACTGGCAAGTTGAGAACCCGCTCTGCCGAACTGTTCATAGTGCTCTATAGAACCAATACTGATGAAAATACAGCAAACACGCTCTATCGATCWTCTCGAAATGGAAGTTCAAATAATGGTAGAAAAGAAATGCGCTCTATTGAAAGTCTAGTAAAACAGCCAGTATGCTCTACTGAACATTGCAAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29517</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>149989</contig_pos>
        <strand>+</strand>
        <context>CTTTTCTTCG[C/T]TATACAAATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAACCTTCTAGAATTCTCTTGTTCCTTCCTCATTTTCTCTCTTTTCTTCG</left_flank>
        <right_flank>TATACAAATCTCGAACAAAAAAGTTTTACCTCTACCTACGTAGTAGGCCC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTATGATTAACATTGCATCAGTTGACAACTTTTTGATATCTTCCATAGGAACCGAAATAAATTGTCTCAAAGTTAGGGGATCTTTCTATTAGACTGTTTACGGTAAGTTTGATCTTTAGGGTCCCAATTACCTGTTATGCAGTTTTTAGGTTCTCATAAGTGATAAGATAGCTAACTGTTAATTTAGGGTTAGTAAAAATTTCGTTAGATCAAAGATCAAGTTTTTTGATTCCTCGAATTACTCACATTTTCGCTTTAACCCCTAATTTTGTATATTCTCGGTATACCTGTCAAAAATTGTATACAGACGAAATTTGTAGCATTTATGGTTTGCAATTAAATTAACACCTGCTTGATAATTATCTAGACCATAAAGTTCAGGATAATCGAGATCAAAAAGGTCACTTTACTCCTGGTAAAAATTTAGAGACTTCCAACTTTTCTATCGAACCTTCTAGAATTCTCTTGTTCCTTCCTCATTTTCTCTCTTTTCTTCGCTATACAAATCTCGAACAAAAAAGTTTTACCTCTACCTACGTAGTAGGCCCCAACCAATCAACCAACCAACCAAAAAAACGTTTCCTGCTATTATGTGTACGGGGACGGAGGACGGACCCAGTCACCCCGTCTCTCTCTCCCTTTTTTCTATTACTCTGTCGTTTTTCTTTGGGTTCGAGACAGGCACACAACACCAAATTGGGCATGTGTTTTCTTCTTTTATTTTCTTGAATAGAACACAAAAATGGTGTCTGGTCCTAGGCTTTTTTTTTGGCTTTTGGAGGTATAGTTTTGGTTGAGCTTGTAGCTTGAAGAATCTCTCGTTGGGGTCATTTTGGGGCTATTTTGGACAATTTTTTAGTATTTTATGGTGTACTTGATTTCACATATTTTTTCGCTGTCCACTTTTTAAAAATCTTTCGTCGACCCCCCCCCCCCAGACGTTCGCTTAACTTTGAGCTTAATTATCTCGGTTCCTTCAAGTGGAATCAAGAAAATTT</canonical>
            <polymorphic>GATTATGATTAACATTGCATCAGTTGACAACTTTTTGATATCTTCCATAGGAACCGAAATAAATTGTCTCAAAGTTAGGGGATCTTTCTATTAGACTGTTTACGGTAAGTTTGATCTTTAGGGTCCCAATTACCTGTTATGCAGTTTTTAGGTTCTCATAAGTGATAAGATAGCTAACTGTTAATTTAGGGTTAGTAAAAATTTCGTTAGATCAAAGATCAAGTTTTTTGATTCCTCGAATTACTCACATTTTCGCTTTAACCCCTAATTTTGTATATTCTCGGTATACCTGTCAAAAATTGTATACAGACGAAATTTGTAGCATTTATGGTTTGCAATTAAATTAACACCTGCTTGATAATTATCTAGACCATAAAGTTCAGGATAATCGAGATCAAAAAGGTCACTTTACTCCTGGTAAAAATTTAGAGACTTCCAACTTTTCTATCGAACCTTCTAGAATTCTCTTGTTCCTTCCTCATTTTCTCTCTTTTCTTCGYTATACAAATCTCGAACAAAAAAGTTTTACCTCTACCTACGTAGTAGGCCCCAACCAATCAACCAACCAACCAAAAAAACGTTTCCTGCTATTATGTGTACGGGGACGGAGGACGGACCCAGTCACCCCGTCTCTCTCTCCCTTTTTTCTATTACTCTGTCGTTTTTCTTTGGGTTCGAGACAGGCACACAACACCAAATTGGGCATGTGTTTTCTTCTTTTATTTTCTTGAATAGAACACAAAAATGGTGTCTGGTCCTAGGCTTTTTTTTTGGCTTTTGGAGGTATAGTTTTGGTTGAGCTTGTAGCTTGAAGAATCTCTCGTTGGGGTCATTTTGGGGCTATTTTGGACAATTTTTTAGTATTTTATGGTGTACTTGATTTCACATATTTTTTCGCTGTCCACTTTTTAAAAATCTTTCGTCGACCCCCCCCCCCCAGACGTTCGCTTAACTTTGAGCTTAATTATCTCGGTTCCTTCAAGTGGAATCAAGAAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTAGACCATAAAGTTCAGGATAA</pcr_primer_p1>
		<pcr_primer_p2>CGTCCCCGTACACATAATAG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATCTAGACCATAAAGTTCAGGATAATCGAGATCAAAAAGGTCACTTTACTCCTGGTAAAAATTTAGAGACTTCCAACTTTTCTATCGAACCTTCTAGAATTCTCTTGTTCCTTCCTCATTTTCTCTCTTTTCTTCGCTATACAAATCTCGAACAAAAAAGTTTTACCTCTACCTACGTAGTAGGCCCCAACCAATCAACCAACCAACCAAAAAAACGTTTCCTGCTATTATGTGTACGGGGACG</canonical_amplicon>
		<polymorphic_amplicon>ATCTAGACCATAAAGTTCAGGATAATCGAGATCAAAAAGGTCACTTTACTCCTGGTAAAAATTTAGAGACTTCCAACTTTTCTATCGAACCTTCTAGAATTCTCTTGTTCCTTCCTCATTTTCTCTCTTTTCTTCGYTATACAAATCTCGAACAAAAAAGTTTTACCTCTACCTACGTAGTAGGCCCCAACCAATCAACCAACCAACCAAAAAAACGTTTCCTGCTATTATGTGTACGGGGACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29518</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>150145</contig_pos>
        <strand>+</strand>
        <context>TTCTATTACT[C/T]TGTCGTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGAGGACGGACCCAGTCACCCCGTCTCTCTCTCCCTTTTTTCTATTACT</left_flank>
        <right_flank>TGTCGTTTTTCTTTGGGTTCGAGACAGGCACACAACACCAAATTGGGCAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATAAGTGATAAGATAGCTAACTGTTAATTTAGGGTTAGTAAAAATTTCGTTAGATCAAAGATCAAGTTTTTTGATTCCTCGAATTACTCACATTTTCGCTTTAACCCCTAATTTTGTATATTCTCGGTATACCTGTCAAAAATTGTATACAGACGAAATTTGTAGCATTTATGGTTTGCAATTAAATTAACACCTGCTTGATAATTATCTAGACCATAAAGTTCAGGATAATCGAGATCAAAAAGGTCACTTTACTCCTGGTAAAAATTTAGAGACTTCCAACTTTTCTATCGAACCTTCTAGAATTCTCTTGTTCCTTCCTCATTTTCTCTCTTTTCTTCGCTATACAAATCTCGAACAAAAAAGTTTTACCTCTACCTACGTAGTAGGCCCCAACCAATCAACCAACCAACCAAAAAAACGTTTCCTGCTATTATGTGTACGGGGACGGAGGACGGACCCAGTCACCCCGTCTCTCTCTCCCTTTTTTCTATTACTCTGTCGTTTTTCTTTGGGTTCGAGACAGGCACACAACACCAAATTGGGCATGTGTTTTCTTCTTTTATTTTCTTGAATAGAACACAAAAATGGTGTCTGGTCCTAGGCTTTTTTTTTGGCTTTTGGAGGTATAGTTTTGGTTGAGCTTGTAGCTTGAAGAATCTCTCGTTGGGGTCATTTTGGGGCTATTTTGGACAATTTTTTAGTATTTTATGGTGTACTTGATTTCACATATTTTTTCGCTGTCCACTTTTTAAAAATCTTTCGTCGACCCCCCCCCCCCAGACGTTCGCTTAACTTTGAGCTTAATTATCTCGGTTCCTTCAAGTGGAATCAAGAAAATTTTAACTGATAAAATGATTATTATAAAATTTGACACACTTTCCCAGTTGACTATAATTTTCTATCTTTAACAAGAATGGAGATAAATTGGGTCCACCGTATACCTTCTAACTCTCGACTTCGAGCTAATTTATCTCGGTTTCTGTTAAAGATATCGAA</canonical>
            <polymorphic>CATAAGTGATAAGATAGCTAACTGTTAATTTAGGGTTAGTAAAAATTTCGTTAGATCAAAGATCAAGTTTTTTGATTCCTCGAATTACTCACATTTTCGCTTTAACCCCTAATTTTGTATATTCTCGGTATACCTGTCAAAAATTGTATACAGACGAAATTTGTAGCATTTATGGTTTGCAATTAAATTAACACCTGCTTGATAATTATCTAGACCATAAAGTTCAGGATAATCGAGATCAAAAAGGTCACTTTACTCCTGGTAAAAATTTAGAGACTTCCAACTTTTCTATCGAACCTTCTAGAATTCTCTTGTTCCTTCCTCATTTTCTCTCTTTTCTTCGCTATACAAATCTCGAACAAAAAAGTTTTACCTCTACCTACGTAGTAGGCCCCAACCAATCAACCAACCAACCAAAAAAACGTTTCCTGCTATTATGTGTACGGGGACGGAGGACGGACCCAGTCACCCCGTCTCTCTCTCCCTTTTTTCTATTACTYTGTCGTTTTTCTTTGGGTTCGAGACAGGCACACAACACCAAATTGGGCATGTGTTTTCTTCTTTTATTTTCTTGAATAGAACACAAAAATGGTGTCTGGTCCTAGGCTTTTTTTTTGGCTTTTGGAGGTATAGTTTTGGTTGAGCTTGTAGCTTGAAGAATCTCTCGTTGGGGTCATTTTGGGGCTATTTTGGACAATTTTTTAGTATTTTATGGTGTACTTGATTTCACATATTTTTTCGCTGTCCACTTTTTAAAAATCTTTCGTCGACCCCCCCCCCCCAGACGTTCGCTTAACTTTGAGCTTAATTATCTCGGTTCCTTCAAGTGGAATCAAGAAAATTTTAACTGATAAAATGATTATTATAAAATTTGACACACTTTCCCAGTTGACTATAATTTTCTATCTTTAACAAGAATGGAGATAAATTGGGTCCACCGTATACCTTCTAACTCTCGACTTCGAGCTAATTTATCTCGGTTTCTGTTAAAGATATCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACGTTTCCTGCTATTATGTGTA</pcr_primer_p1>
		<pcr_primer_p2>AACGAGAGATTCTTCAAGCTAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACGTTTCCTGCTATTATGTGTACGGGGACGGAGGACGGACCCAGTCACCCCGTCTCTCTCTCCCTTTTTTCTATTACTCTGTCGTTTTTCTTTGGGTTCGAGACAGGCACACAACACCAAATTGGGCATGTGTTTTCTTCTTTTATTTTCTTGAATAGAACACAAAAATGGTGTCTGGTCCTAGGCTTTTTTTTTGGCTTTTGGAGGTATAGTTTTGGTTGAGCTTGTAGCTTGAAGAATCTCTCGTT</canonical_amplicon>
		<polymorphic_amplicon>AACGTTTCCTGCTATTATGTGTACGGGGACGGAGGACGGACCCAGTCACCCCGTCTCTCTCTCCCTTTTTTCTATTACTYTGTCGTTTTTCTTTGGGTTCGAGACAGGCACACAACACCAAATTGGGCATGTGTTTTCTTCTTTTATTTTCTTGAATAGAACACAAAAATGGTGTCTGGTCCTAGGCTTTTTTTTTGGCTTTTGGAGGTATAGTTTTGGTTGAGCTTGTAGCTTGAAGAATCTCTCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29519</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>150184</contig_pos>
        <strand>+</strand>
        <context>CACACAACAC[A/C]AAATTGGGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCTATTACTCTGTCGTTTTTCTTTGGGTTCGAGACAGGCACACAACAC</left_flank>
        <right_flank>AAATTGGGCATGTGTTTTCTTCTTTTATTTTCTTGAATAGAACACAAAAA</right_flank>
        <qual_score>149</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAAATTTCGTTAGATCAAAGATCAAGTTTTTTGATTCCTCGAATTACTCACATTTTCGCTTTAACCCCTAATTTTGTATATTCTCGGTATACCTGTCAAAAATTGTATACAGACGAAATTTGTAGCATTTATGGTTTGCAATTAAATTAACACCTGCTTGATAATTATCTAGACCATAAAGTTCAGGATAATCGAGATCAAAAAGGTCACTTTACTCCTGGTAAAAATTTAGAGACTTCCAACTTTTCTATCGAACCTTCTAGAATTCTCTTGTTCCTTCCTCATTTTCTCTCTTTTCTTCGCTATACAAATCTCGAACAAAAAAGTTTTACCTCTACCTACGTAGTAGGCCCCAACCAATCAACCAACCAACCAAAAAAACGTTTCCTGCTATTATGTGTACGGGGACGGAGGACGGACCCAGTCACCCCGTCTCTCTCTCCCTTTTTTCTATTACTCTGTCGTTTTTCTTTGGGTTCGAGACAGGCACACAACACCAAATTGGGCATGTGTTTTCTTCTTTTATTTTCTTGAATAGAACACAAAAATGGTGTCTGGTCCTAGGCTTTTTTTTTGGCTTTTGGAGGTATAGTTTTGGTTGAGCTTGTAGCTTGAAGAATCTCTCGTTGGGGTCATTTTGGGGCTATTTTGGACAATTTTTTAGTATTTTATGGTGTACTTGATTTCACATATTTTTTCGCTGTCCACTTTTTAAAAATCTTTCGTCGACCCCCCCCCCCCAGACGTTCGCTTAACTTTGAGCTTAATTATCTCGGTTCCTTCAAGTGGAATCAAGAAAATTTTAACTGATAAAATGATTATTATAAAATTTGACACACTTTCCCAGTTGACTATAATTTTCTATCTTTAACAAGAATGGAGATAAATTGGGTCCACCGTATACCTTCTAACTCTCGACTTCGAGCTAATTTATCTCGGTTTCTGTTAAAGATATCGAAACGCGGTCAACTGATAAAATGTTTGTGATACTATGATAA</canonical>
            <polymorphic>TAAAAATTTCGTTAGATCAAAGATCAAGTTTTTTGATTCCTCGAATTACTCACATTTTCGCTTTAACCCCTAATTTTGTATATTCTCGGTATACCTGTCAAAAATTGTATACAGACGAAATTTGTAGCATTTATGGTTTGCAATTAAATTAACACCTGCTTGATAATTATCTAGACCATAAAGTTCAGGATAATCGAGATCAAAAAGGTCACTTTACTCCTGGTAAAAATTTAGAGACTTCCAACTTTTCTATCGAACCTTCTAGAATTCTCTTGTTCCTTCCTCATTTTCTCTCTTTTCTTCGCTATACAAATCTCGAACAAAAAAGTTTTACCTCTACCTACGTAGTAGGCCCCAACCAATCAACCAACCAACCAAAAAAACGTTTCCTGCTATTATGTGTACGGGGACGGAGGACGGACCCAGTCACCCCGTCTCTCTCTCCCTTTTTTCTATTACTCTGTCGTTTTTCTTTGGGTTCGAGACAGGCACACAACACMAAATTGGGCATGTGTTTTCTTCTTTTATTTTCTTGAATAGAACACAAAAATGGTGTCTGGTCCTAGGCTTTTTTTTTGGCTTTTGGAGGTATAGTTTTGGTTGAGCTTGTAGCTTGAAGAATCTCTCGTTGGGGTCATTTTGGGGCTATTTTGGACAATTTTTTAGTATTTTATGGTGTACTTGATTTCACATATTTTTTCGCTGTCCACTTTTTAAAAATCTTTCGTCGACCCCCCCCCCCCAGACGTTCGCTTAACTTTGAGCTTAATTATCTCGGTTCCTTCAAGTGGAATCAAGAAAATTTTAACTGATAAAATGATTATTATAAAATTTGACACACTTTCCCAGTTGACTATAATTTTCTATCTTTAACAAGAATGGAGATAAATTGGGTCCACCGTATACCTTCTAACTCTCGACTTCGAGCTAATTTATCTCGGTTTCTGTTAAAGATATCGAAACGCGGTCAACTGATAAAATGTTTGTGATACTATGATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACGTTTCCTGCTATTATGTGTA</pcr_primer_p1>
		<pcr_primer_p2>AACGAGAGATTCTTCAAGCTAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACGTTTCCTGCTATTATGTGTACGGGGACGGAGGACGGACCCAGTCACCCCGTCTCTCTCTCCCTTTTTTCTATTACTCTGTCGTTTTTCTTTGGGTTCGAGACAGGCACACAACACCAAATTGGGCATGTGTTTTCTTCTTTTATTTTCTTGAATAGAACACAAAAATGGTGTCTGGTCCTAGGCTTTTTTTTTGGCTTTTGGAGGTATAGTTTTGGTTGAGCTTGTAGCTTGAAGAATCTCTCGTT</canonical_amplicon>
		<polymorphic_amplicon>AACGTTTCCTGCTATTATGTGTACGGGGACGGAGGACGGACCCAGTCACCCCGTCTCTCTCTCCCTTTTTTCTATTACTCTGTCGTTTTTCTTTGGGTTCGAGACAGGCACACAACACMAAATTGGGCATGTGTTTTCTTCTTTTATTTTCTTGAATAGAACACAAAAATGGTGTCTGGTCCTAGGCTTTTTTTTTGGCTTTTGGAGGTATAGTTTTGGTTGAGCTTGTAGCTTGAAGAATCTCTCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29520</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>150251</contig_pos>
        <strand>+</strand>
        <context>CTGGTCCTAG[C/G]CTTTTTTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCTTCTTTTATTTTCTTGAATAGAACACAAAAATGGTGTCTGGTCCTAG</left_flank>
        <right_flank>CTTTTTTTTTGGCTTTTGGAGGTATAGTTTTGGTTGAGCTTGTAGCTTGA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCTAATTTTGTATATTCTCGGTATACCTGTCAAAAATTGTATACAGACGAAATTTGTAGCATTTATGGTTTGCAATTAAATTAACACCTGCTTGATAATTATCTAGACCATAAAGTTCAGGATAATCGAGATCAAAAAGGTCACTTTACTCCTGGTAAAAATTTAGAGACTTCCAACTTTTCTATCGAACCTTCTAGAATTCTCTTGTTCCTTCCTCATTTTCTCTCTTTTCTTCGCTATACAAATCTCGAACAAAAAAGTTTTACCTCTACCTACGTAGTAGGCCCCAACCAATCAACCAACCAACCAAAAAAACGTTTCCTGCTATTATGTGTACGGGGACGGAGGACGGACCCAGTCACCCCGTCTCTCTCTCCCTTTTTTCTATTACTCTGTCGTTTTTCTTTGGGTTCGAGACAGGCACACAACACCAAATTGGGCATGTGTTTTCTTCTTTTATTTTCTTGAATAGAACACAAAAATGGTGTCTGGTCCTAGGCTTTTTTTTTGGCTTTTGGAGGTATAGTTTTGGTTGAGCTTGTAGCTTGAAGAATCTCTCGTTGGGGTCATTTTGGGGCTATTTTGGACAATTTTTTAGTATTTTATGGTGTACTTGATTTCACATATTTTTTCGCTGTCCACTTTTTAAAAATCTTTCGTCGACCCCCCCCCCCCAGACGTTCGCTTAACTTTGAGCTTAATTATCTCGGTTCCTTCAAGTGGAATCAAGAAAATTTTAACTGATAAAATGATTATTATAAAATTTGACACACTTTCCCAGTTGACTATAATTTTCTATCTTTAACAAGAATGGAGATAAATTGGGTCCACCGTATACCTTCTAACTCTCGACTTCGAGCTAATTTATCTCGGTTTCTGTTAAAGATATCGAAACGCGGTCAACTGATAAAATGTTTGTGATACTATGATAAACATTTTATCAGTTAGCCACATTTTTCTGTCTTTAACAGGAACCGAGATATGTTGGGTCAAACTATA</canonical>
            <polymorphic>CCCTAATTTTGTATATTCTCGGTATACCTGTCAAAAATTGTATACAGACGAAATTTGTAGCATTTATGGTTTGCAATTAAATTAACACCTGCTTGATAATTATCTAGACCATAAAGTTCAGGATAATCGAGATCAAAAAGGTCACTTTACTCCTGGTAAAAATTTAGAGACTTCCAACTTTTCTATCGAACCTTCTAGAATTCTCTTGTTCCTTCCTCATTTTCTCTCTTTTCTTCGCTATACAAATCTCGAACAAAAAAGTTTTACCTCTACCTACGTAGTAGGCCCCAACCAATCAACCAACCAACCAAAAAAACGTTTCCTGCTATTATGTGTACGGGGACGGAGGACGGACCCAGTCACCCCGTCTCTCTCTCCCTTTTTTCTATTACTCTGTCGTTTTTCTTTGGGTTCGAGACAGGCACACAACACCAAATTGGGCATGTGTTTTCTTCTTTTATTTTCTTGAATAGAACACAAAAATGGTGTCTGGTCCTAGSCTTTTTTTTTGGCTTTTGGAGGTATAGTTTTGGTTGAGCTTGTAGCTTGAAGAATCTCTCGTTGGGGTCATTTTGGGGCTATTTTGGACAATTTTTTAGTATTTTATGGTGTACTTGATTTCACATATTTTTTCGCTGTCCACTTTTTAAAAATCTTTCGTCGACCCCCCCCCCCCAGACGTTCGCTTAACTTTGAGCTTAATTATCTCGGTTCCTTCAAGTGGAATCAAGAAAATTTTAACTGATAAAATGATTATTATAAAATTTGACACACTTTCCCAGTTGACTATAATTTTCTATCTTTAACAAGAATGGAGATAAATTGGGTCCACCGTATACCTTCTAACTCTCGACTTCGAGCTAATTTATCTCGGTTTCTGTTAAAGATATCGAAACGCGGTCAACTGATAAAATGTTTGTGATACTATGATAAACATTTTATCAGTTAGCCACATTTTTCTGTCTTTAACAGGAACCGAGATATGTTGGGTCAAACTATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCTAGG</site>
                <isoschizomers>
                    <enzyme>AvrII</enzyme>
                    <enzyme>BlnI</enzyme>
                    <enzyme>BspA2I</enzyme>
                    <enzyme>XmaJI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>285 215 163 119 89 51 33 26 12 7</canonical_bands>
                <polymorphic_bands>285 227 163 119 89 51 33 26 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACGTTTCCTGCTATTATGTGTA</pcr_primer_p1>
		<pcr_primer_p2>AACGAGAGATTCTTCAAGCTAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACGTTTCCTGCTATTATGTGTACGGGGACGGAGGACGGACCCAGTCACCCCGTCTCTCTCTCCCTTTTTTCTATTACTCTGTCGTTTTTCTTTGGGTTCGAGACAGGCACACAACACCAAATTGGGCATGTGTTTTCTTCTTTTATTTTCTTGAATAGAACACAAAAATGGTGTCTGGTCCTAGGCTTTTTTTTTGGCTTTTGGAGGTATAGTTTTGGTTGAGCTTGTAGCTTGAAGAATCTCTCGTT</canonical_amplicon>
		<polymorphic_amplicon>AACGTTTCCTGCTATTATGTGTACGGGGACGGAGGACGGACCCAGTCACCCCGTCTCTCTCTCCCTTTTTTCTATTACTCTGTCGTTTTTCTTTGGGTTCGAGACAGGCACACAACACCAAATTGGGCATGTGTTTTCTTCTTTTATTTTCTTGAATAGAACACAAAAATGGTGTCTGGTCCTAGSCTTTTTTTTTGGCTTTTGGAGGTATAGTTTTGGTTGAGCTTGTAGCTTGAAGAATCTCTCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29521</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>150351</contig_pos>
        <strand>+</strand>
        <context>AATTTTTTAG[C/T]ATTTTATGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGAATCTCTCGTTGGGGTCATTTTGGGGCTATTTTGGACAATTTTTTAG</left_flank>
        <right_flank>ATTTTATGGTGTACTTGATTTCACATATTTTTTCGCTGTCCACTTTTTAA</right_flank>
        <qual_score>145</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCTAGACCATAAAGTTCAGGATAATCGAGATCAAAAAGGTCACTTTACTCCTGGTAAAAATTTAGAGACTTCCAACTTTTCTATCGAACCTTCTAGAATTCTCTTGTTCCTTCCTCATTTTCTCTCTTTTCTTCGCTATACAAATCTCGAACAAAAAAGTTTTACCTCTACCTACGTAGTAGGCCCCAACCAATCAACCAACCAACCAAAAAAACGTTTCCTGCTATTATGTGTACGGGGACGGAGGACGGACCCAGTCACCCCGTCTCTCTCTCCCTTTTTTCTATTACTCTGTCGTTTTTCTTTGGGTTCGAGACAGGCACACAACACCAAATTGGGCATGTGTTTTCTTCTTTTATTTTCTTGAATAGAACACAAAAATGGTGTCTGGTCCTAGGCTTTTTTTTTGGCTTTTGGAGGTATAGTTTTGGTTGAGCTTGTAGCTTGAAGAATCTCTCGTTGGGGTCATTTTGGGGCTATTTTGGACAATTTTTTAGTATTTTATGGTGTACTTGATTTCACATATTTTTTCGCTGTCCACTTTTTAAAAATCTTTCGTCGACCCCCCCCCCCCAGACGTTCGCTTAACTTTGAGCTTAATTATCTCGGTTCCTTCAAGTGGAATCAAGAAAATTTTAACTGATAAAATGATTATTATAAAATTTGACACACTTTCCCAGTTGACTATAATTTTCTATCTTTAACAAGAATGGAGATAAATTGGGTCCACCGTATACCTTCTAACTCTCGACTTCGAGCTAATTTATCTCGGTTTCTGTTAAAGATATCGAAACGCGGTCAACTGATAAAATGTTTGTGATACTATGATAAACATTTTATCAGTTAGCCACATTTTTCTGTCTTTAACAGGAACCGAGATATGTTGGGTCAAACTATACCGTATCCCCATAACACCTATTCCCCTCCCCCAAACGATAGGTCCACTTTGAGCCAATTTATCTCGGTTCCTTGGGGAGATATGAAAAAGTTGTTAACTA</canonical>
            <polymorphic>TATCTAGACCATAAAGTTCAGGATAATCGAGATCAAAAAGGTCACTTTACTCCTGGTAAAAATTTAGAGACTTCCAACTTTTCTATCGAACCTTCTAGAATTCTCTTGTTCCTTCCTCATTTTCTCTCTTTTCTTCGCTATACAAATCTCGAACAAAAAAGTTTTACCTCTACCTACGTAGTAGGCCCCAACCAATCAACCAACCAACCAAAAAAACGTTTCCTGCTATTATGTGTACGGGGACGGAGGACGGACCCAGTCACCCCGTCTCTCTCTCCCTTTTTTCTATTACTCTGTCGTTTTTCTTTGGGTTCGAGACAGGCACACAACACCAAATTGGGCATGTGTTTTCTTCTTTTATTTTCTTGAATAGAACACAAAAATGGTGTCTGGTCCTAGGCTTTTTTTTTGGCTTTTGGAGGTATAGTTTTGGTTGAGCTTGTAGCTTGAAGAATCTCTCGTTGGGGTCATTTTGGGGCTATTTTGGACAATTTTTTAGYATTTTATGGTGTACTTGATTTCACATATTTTTTCGCTGTCCACTTTTTAAAAATCTTTCGTCGACCCCCCCCCCCCAGACGTTCGCTTAACTTTGAGCTTAATTATCTCGGTTCCTTCAAGTGGAATCAAGAAAATTTTAACTGATAAAATGATTATTATAAAATTTGACACACTTTCCCAGTTGACTATAATTTTCTATCTTTAACAAGAATGGAGATAAATTGGGTCCACCGTATACCTTCTAACTCTCGACTTCGAGCTAATTTATCTCGGTTTCTGTTAAAGATATCGAAACGCGGTCAACTGATAAAATGTTTGTGATACTATGATAAACATTTTATCAGTTAGCCACATTTTTCTGTCTTTAACAGGAACCGAGATATGTTGGGTCAAACTATACCGTATCCCCATAACACCTATTCCCCTCCCCCAAACGATAGGTCCACTTTGAGCCAATTTATCTCGGTTCCTTGGGGAGATATGAAAAAGTTGTTAACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTTGTAGCTTGAAGAATCTC</pcr_primer_p1>
		<pcr_primer_p2>GTGTTATGGGGATACGGTATAG</pcr_primer_p2>
		<pcr_amplicon_size>481</pcr_amplicon_size>
		<canonical_amplicon>AGCTTGTAGCTTGAAGAATCTCTCGTTGGGGTCATTTTGGGGCTATTTTGGACAATTTTTTAGTATTTTATGGTGTACTTGATTTCACATATTTTTTCGCTGTCCACTTTTTAAAAATCTTTCGTCGACCCCCCCCCCCCAGACGTTCGCTTAACTTTGAGCTTAATTATCTCGGTTCCTTCAAGTGGAATCAAGAAAATTTTAACTGATAAAATGATTATTATAAAATTTGACACACTTTCCCAGTTGACTATAATTTTCTATCTTTAACAAGAATGGAGATAAATTGGGTCCACCGTATACCTTCTAACTCTCGACTTCGAGCTAATTTATCTCGGTTTCTGTTAAAGATATCGAAACGCGGTCAACTGATAAAATGTTTGTGATACTATGATAAACATTTTATCAGTTAGCCACATTTTTCTGTCTTTAACAGGAACCGAGATATGTTGGGTCAAACTATACCGTATCCCCATAACAC</canonical_amplicon>
		<polymorphic_amplicon>AGCTTGTAGCTTGAAGAATCTCTCGTTGGGGTCATTTTGGGGCTATTTTGGACAATTTTTTAGYATTTTATGGTGTACTTGATTTCACATATTTTTTCGCTGTCCACTTTTTAAAAATCTTTCGTCGACCCCCCCCCCCCAGACGTTCGCTTAACTTTGAGCTTAATTATCTCGGTTCCTTCAAGTGGAATCAAGAAAATTTTAACTGATAAAATGATTATTATAAAATTTGACACACTTTCCCAGTTGACTATAATTTTCTATCTTTAACAAGAATGGAGATAAATTGGGTCCACCGTATACCTTCTAACTCTCGACTTCGAGCTAATTTATCTCGGTTTCTGTTAAAGATATCGAAACGCGGTCAACTGATAAAATGTTTGTGATACTATGATAAACATTTTATCAGTTAGCCACATTTTTCTGTCTTTAACAGGAACCGAGATATGTTGGGTCAAACTATACCGTATCCCCATAACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29522</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>150433</contig_pos>
        <strand></strand>
        <context>cccccagacg[T/G]tcgcttaact</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTCGCTGTCCACTTTTTAAAAATCTTTCGTCGACCCCCCCCCCCCAGACG</left_flank>
        <right_flank>TCGCTTAACTTTGAGCTTAATTATCTCGGTTCCTTCAAGTGGAATCAAGA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATCGAACCTTCTAGAATTCTCTTGTTCCTTCCTCATTTTCTCTCTTTTCTTCGCTATACAAATCTCGAACAAAAAAGTTTTACCTCTACCTACGTAGTAGGCCCCAACCAATCAACCAACCAACCAAAAAAACGTTTCCTGCTATTATGTGTACGGGGACGGAGGACGGACCCAGTCACCCCGTCTCTCTCTCCCTTTTTTCTATTACTCTGTCGTTTTTCTTTGGGTTCGAGACAGGCACACAACACCAAATTGGGCATGTGTTTTCTTCTTTTATTTTCTTGAATAGAACACAAAAATGGTGTCTGGTCCTAGGCTTTTTTTTTGGCTTTTGGAGGTATAGTTTTGGTTGAGCTTGTAGCTTGAAGAATCTCTCGTTGGGGTCATTTTGGGGCTATTTTGGACAATTTTTTAGTATTTTATGGTGTACTTGATTTCACATATTTTTTCGCTGTCCACTTTTTAAAAATCTTTCGTCGACCCCCCCCCCCCAGACGTTCGCTTAACTTTGAGCTTAATTATCTCGGTTCCTTCAAGTGGAATCAAGAAAATTTTAACTGATAAAATGATTATTATAAAATTTGACACACTTTCCCAGTTGACTATAATTTTCTATCTTTAACAAGAATGGAGATAAATTGGGTCCACCGTATACCTTCTAACTCTCGACTTCGAGCTAATTTATCTCGGTTTCTGTTAAAGATATCGAAACGCGGTCAACTGATAAAATGTTTGTGATACTATGATAAACATTTTATCAGTTAGCCACATTTTTCTGTCTTTAACAGGAACCGAGATATGTTGGGTCAAACTATACCGTATCCCCATAACACCTATTCCCCTCCCCCAAACGATAGGTCCACTTTGAGCCAATTTATCTCGGTTCCTTGGGGAGATATGAAAAAGTTGTTAACTAATAAATCGTTTATCATGATATCAGTAACATTTTAGTAGTTGGTTACTTTTTGATATCTTTCACAGGAACCGAGATAATTGAG</canonical>
            <polymorphic>CTATCGAACCTTCTAGAATTCTCTTGTTCCTTCCTCATTTTCTCTCTTTTCTTCGCTATACAAATCTCGAACAAAAAAGTTTTACCTCTACCTACGTAGTAGGCCCCAACCAATCAACCAACCAACCAAAAAAACGTTTCCTGCTATTATGTGTACGGGGACGGAGGACGGACCCAGTCACCCCGTCTCTCTCTCCCTTTTTTCTATTACTCTGTCGTTTTTCTTTGGGTTCGAGACAGGCACACAACACCAAATTGGGCATGTGTTTTCTTCTTTTATTTTCTTGAATAGAACACAAAAATGGTGTCTGGTCCTAGGCTTTTTTTTTGGCTTTTGGAGGTATAGTTTTGGTTGAGCTTGTAGCTTGAAGAATCTCTCGTTGGGGTCATTTTGGGGCTATTTTGGACAATTTTTTAGTATTTTATGGTGTACTTGATTTCACATATTTTTTCGCTGTCCACTTTTTAAAAATCTTTCGTCGACCCCCCCCCCCCAGACGKTCGCTTAACTTTGAGCTTAATTATCTCGGTTCCTTCAAGTGGAATCAAGAAAATTTTAACTGATAAAATGATTATTATAAAATTTGACACACTTTCCCAGTTGACTATAATTTTCTATCTTTAACAAGAATGGAGATAAATTGGGTCCACCGTATACCTTCTAACTCTCGACTTCGAGCTAATTTATCTCGGTTTCTGTTAAAGATATCGAAACGCGGTCAACTGATAAAATGTTTGTGATACTATGATAAACATTTTATCAGTTAGCCACATTTTTCTGTCTTTAACAGGAACCGAGATATGTTGGGTCAAACTATACCGTATCCCCATAACACCTATTCCCCTCCCCCAAACGATAGGTCCACTTTGAGCCAATTTATCTCGGTTCCTTGGGGAGATATGAAAAAGTTGTTAACTAATAAATCGTTTATCATGATATCAGTAACATTTTAGTAGTTGGTTACTTTTTGATATCTTTCACAGGAACCGAGATAATTGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>503 363 94 40</canonical_bands>
                <polymorphic_bands>866 94 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCGCTGTCCACTTTTTA</pcr_primer_p1>
		<pcr_primer_p2>GTGTTATGGGGATACGGTATAG</pcr_primer_p2>
		<pcr_amplicon_size>388</pcr_amplicon_size>
		<canonical_amplicon>TTTTCGCTGTCCACTTTTTAAAAATCTTTCGTCGACCCCCCCCCCCCAGACGTTCGCTTAACTTTGAGCTTAATTATCTCGGTTCCTTCAAGTGGAATCAAGAAAATTTTAACTGATAAAATGATTATTATAAAATTTGACACACTTTCCCAGTTGACTATAATTTTCTATCTTTAACAAGAATGGAGATAAATTGGGTCCACCGTATACCTTCTAACTCTCGACTTCGAGCTAATTTATCTCGGTTTCTGTTAAAGATATCGAAACGCGGTCAACTGATAAAATGTTTGTGATACTATGATAAACATTTTATCAGTTAGCCACATTTTTCTGTCTTTAACAGGAACCGAGATATGTTGGGTCAAACTATACCGTATCCCCATAACAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCGCTGTCCACTTTTTAAAAATCTTTCGTCGACCCCCCCCCCCCAGACGKTCGCTTAACTTTGAGCTTAATTATCTCGGTTCCTTCAAGTGGAATCAAGAAAATTTTAACTGATAAAATGATTATTATAAAATTTGACACACTTTCCCAGTTGACTATAATTTTCTATCTTTAACAAGAATGGAGATAAATTGGGTCCACCGTATACCTTCTAACTCTCGACTTCGAGCTAATTTATCTCGGTTTCTGTTAAAGATATCGAAACGCGGTCAACTGATAAAATGTTTGTGATACTATGATAAACATTTTATCAGTTAGCCACATTTTTCTGTCTTTAACAGGAACCGAGATATGTTGGGTCAAACTATACCGTATCCCCATAACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29523</snp_id>
        <super_contig>c004600828.Contig1</super_contig>
        <contig_pos>150476</contig_pos>
        <strand></strand>
        <context>cttcaagtgg[A/T]atcaagaaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCAGACGTTCGCTTAACTTTGAGCTTAATTATCTCGGTTCCTTCAAGTGG</left_flank>
        <right_flank>ATCAAGAAAATTTTAACTGATAAAATGATTATTATAAAATTTGACACACT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTTTTCTTCGCTATACAAATCTCGAACAAAAAAGTTTTACCTCTACCTACGTAGTAGGCCCCAACCAATCAACCAACCAACCAAAAAAACGTTTCCTGCTATTATGTGTACGGGGACGGAGGACGGACCCAGTCACCCCGTCTCTCTCTCCCTTTTTTCTATTACTCTGTCGTTTTTCTTTGGGTTCGAGACAGGCACACAACACCAAATTGGGCATGTGTTTTCTTCTTTTATTTTCTTGAATAGAACACAAAAATGGTGTCTGGTCCTAGGCTTTTTTTTTGGCTTTTGGAGGTATAGTTTTGGTTGAGCTTGTAGCTTGAAGAATCTCTCGTTGGGGTCATTTTGGGGCTATTTTGGACAATTTTTTAGTATTTTATGGTGTACTTGATTTCACATATTTTTTCGCTGTCCACTTTTTAAAAATCTTTCGTCGACCCCCCCCCCCCAGACGTTCGCTTAACTTTGAGCTTAATTATCTCGGTTCCTTCAAGTGGAATCAAGAAAATTTTAACTGATAAAATGATTATTATAAAATTTGACACACTTTCCCAGTTGACTATAATTTTCTATCTTTAACAAGAATGGAGATAAATTGGGTCCACCGTATACCTTCTAACTCTCGACTTCGAGCTAATTTATCTCGGTTTCTGTTAAAGATATCGAAACGCGGTCAACTGATAAAATGTTTGTGATACTATGATAAACATTTTATCAGTTAGCCACATTTTTCTGTCTTTAACAGGAACCGAGATATGTTGGGTCAAACTATACCGTATCCCCATAACACCTATTCCCCTCCCCCAAACGATAGGTCCACTTTGAGCCAATTTATCTCGGTTCCTTGGGGAGATATGAAAAAGTTGTTAACTAATAAATCGTTTATCATGATATCAGTAACATTTTAGTAGTTGGTTACTTTTTGATATCTTTCACAGGAACCGAGATAATTGAGCTTAAAGTCGAGAGTTAGTTAGGTAACTCTAGAGTGTTCTCTG</canonical>
            <polymorphic>CTCTTTTCTTCGCTATACAAATCTCGAACAAAAAAGTTTTACCTCTACCTACGTAGTAGGCCCCAACCAATCAACCAACCAACCAAAAAAACGTTTCCTGCTATTATGTGTACGGGGACGGAGGACGGACCCAGTCACCCCGTCTCTCTCTCCCTTTTTTCTATTACTCTGTCGTTTTTCTTTGGGTTCGAGACAGGCACACAACACCAAATTGGGCATGTGTTTTCTTCTTTTATTTTCTTGAATAGAACACAAAAATGGTGTCTGGTCCTAGGCTTTTTTTTTGGCTTTTGGAGGTATAGTTTTGGTTGAGCTTGTAGCTTGAAGAATCTCTCGTTGGGGTCATTTTGGGGCTATTTTGGACAATTTTTTAGTATTTTATGGTGTACTTGATTTCACATATTTTTTCGCTGTCCACTTTTTAAAAATCTTTCGTCGACCCCCCCCCCCCAGACGTTCGCTTAACTTTGAGCTTAATTATCTCGGTTCCTTCAAGTGGWATCAAGAAAATTTTAACTGATAAAATGATTATTATAAAATTTGACACACTTTCCCAGTTGACTATAATTTTCTATCTTTAACAAGAATGGAGATAAATTGGGTCCACCGTATACCTTCTAACTCTCGACTTCGAGCTAATTTATCTCGGTTTCTGTTAAAGATATCGAAACGCGGTCAACTGATAAAATGTTTGTGATACTATGATAAACATTTTATCAGTTAGCCACATTTTTCTGTCTTTAACAGGAACCGAGATATGTTGGGTCAAACTATACCGTATCCCCATAACACCTATTCCCCTCCCCCAAACGATAGGTCCACTTTGAGCCAATTTATCTCGGTTCCTTGGGGAGATATGAAAAAGTTGTTAACTAATAAATCGTTTATCATGATATCAGTAACATTTTAGTAGTTGGTTACTTTTTGATATCTTTCACAGGAACCGAGATAATTGAGCTTAAAGTCGAGAGTTAGTTAGGTAACTCTAGAGTGTTCTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>501 327 172</canonical_bands>
                <polymorphic_bands>673 327</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 327 172</canonical_bands>
                <polymorphic_bands>673 327</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCGCTGTCCACTTTTTA</pcr_primer_p1>
		<pcr_primer_p2>GTGTTATGGGGATACGGTATAG</pcr_primer_p2>
		<pcr_amplicon_size>388</pcr_amplicon_size>
		<canonical_amplicon>TTTTCGCTGTCCACTTTTTAAAAATCTTTCGTCGACCCCCCCCCCCCAGACGTTCGCTTAACTTTGAGCTTAATTATCTCGGTTCCTTCAAGTGGAATCAAGAAAATTTTAACTGATAAAATGATTATTATAAAATTTGACACACTTTCCCAGTTGACTATAATTTTCTATCTTTAACAAGAATGGAGATAAATTGGGTCCACCGTATACCTTCTAACTCTCGACTTCGAGCTAATTTATCTCGGTTTCTGTTAAAGATATCGAAACGCGGTCAACTGATAAAATGTTTGTGATACTATGATAAACATTTTATCAGTTAGCCACATTTTTCTGTCTTTAACAGGAACCGAGATATGTTGGGTCAAACTATACCGTATCCCCATAACAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCGCTGTCCACTTTTTAAAAATCTTTCGTCGACCCCCCCCCCCCAGACGTTCGCTTAACTTTGAGCTTAATTATCTCGGTTCCTTCAAGTGGWATCAAGAAAATTTTAACTGATAAAATGATTATTATAAAATTTGACACACTTTCCCAGTTGACTATAATTTTCTATCTTTAACAAGAATGGAGATAAATTGGGTCCACCGTATACCTTCTAACTCTCGACTTCGAGCTAATTTATCTCGGTTTCTGTTAAAGATATCGAAACGCGGTCAACTGATAAAATGTTTGTGATACTATGATAAACATTTTATCAGTTAGCCACATTTTTCTGTCTTTAACAGGAACCGAGATATGTTGGGTCAAACTATACCGTATCCCCATAACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29524</snp_id>
        <super_contig>c004700889.Contig3</super_contig>
        <contig_pos>4107</contig_pos>
        <strand></strand>
        <context>AAAATTTTTC[A/G]WAAAAATCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGAATTTTCAAGTAAAAGTCGATATTTACTTTTACGTGAAAATTTTTC</left_flank>
        <right_flank>AAAAAATCGATAAATTTCGAATTTTTTACGTAAAAATCGATTTTTAAGTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAAATAAAAATTTCCCAAATTTCAGTGTTTTTTAGTTCAGATTTTGCCGATTTTTGTATATTCAAAGCGAGAAAAACCCGCTGAAAATCGTCAAAAAAATGAATTATTCTGAAATTTCAGCTCCTGATGACGTTCCTACTGTACTACTCCACCATCACCTCAATCGATCAATACTCAAAAACGGCGAGAACGAATCCGAACTATCATTCCACCGCGTTCATCATTTTCGCATTCATTACCTCGTGTTTCTATGCGATTATGGTGAATATATCTAATTCGCTCTATTGAGAAGACCTGTTCGGTGGACCGCGTTTGAATTTTTGAAAATTCAGAAAAATCGATAAAATTGGATTTTTCACGTGAAAATTCAAATTTTAAAAAAATCGATTTTTAAGTGAAAAATTTCATAAAATCGATAAAACTGGAATTTTTACGTGAAATCAAAAGTTTGAATTTTCAAGTAAAAGTCGATATTTACTTTTACGTGAAAATTTTTCAAAAAAATCGATAAATTTCGAATTTTTTACGTAAAAATCGATTTTTAAGTTCACGTGAAAATTGTTCAAAAATCGATAAAATTGAATTTTTACGTGAAAATTCCAACTTTTACAATAATCGATTTTTACGTGAAAAATCGATAAATTCACGAGAAAATCTATAAATTTGAATTTTCACGTAAAAAATCGAATCTCGAATTTCCGGTCGGAAAACGCGCTCCATCTCACACAACCTAATTTTTCCACGAAAAAATCGATAAGTGACCCTTTTCACAGCTCGTGATCCACTTCGCCACACTGTACTACATGATGATCTACCCAATCACCCCATTGACGTCTCCCTATACACTATCCAACGCGAATTACTCACAAATGAACTACGGACCATTGGGAGTTGGAAGTAATGGAAGTGGTGGGCGGAGTCAGCATTATGAGGTGAAAAAATCAATAAAAATCGACGAAAAATGAGCAACTTGAGCCTAGAAAAGGTCTGGTGGCCTA</canonical>
            <polymorphic>TAAAAATAAAAATTTCCCAAATTTCAGTGTTTTTTAGTTCAGATTTTGCCGATTTTTGTATATTCAAAGCGAGAAAAACCCGCTGAAAATCGTCAAAAAAATGAATTATTCTGAAATTTCAGCTCCTGATGACGTTCCTACTGTACTACTCCACCATCACCTCAATCGATCAATACTCAAAAACGGCGAGAACGAATCCGAACTATCATTCCACCGCGTTCATCATTTTCGCATTCATTACCTCGTGTTTCTATGCGATTATGGTGAATATATCTAATTCGCTCTATTGAGAAGACCTGTTCGGTGGACCGCGTTTGAATTTTTGAAAATTCAGAAAAATCGATAAAATTGGATTTTTCACGTGAAAATTCAAATTTTAAAAAAATCGATTTTTAAGTGAAAAATTTCATAAAATCGATAAAACTGGAATTTTTACGTGAAATCAAAAGTTTGAATTTTCAAGTAAAAGTCGATATTTACTTTTACGTGAAAATTTTTCRAAAAAATCGATAAATTTCGAATTTTTTACGTAAAAATCGATTTTTAAGTTCACGTGAAAATTGTTCAAAAATCGATAAAATTGAATTTTTACGTGAAAATTCCAACTTTTACAATAATCGATTTTTACGTGAAAAATCGATAAATTCACGAGAAAATCTATAAATTTGAATTTTCACGTAAAAAATCGAATCTCGAATTTCCGGTCGGAAAACGCGCTCCATCTCACACAACCTAATTTTTCCACGAAAAAATCGATAAGTGACCCTTTTCACAGCTCGTGATCCACTTCGCCACACTGTACTACATGATGATCTACCCAATCACCCCATTGACGTCTCCCTATACACTATCCAACGCGAATTACTCACAAATGAACTACGGACCATTGGGAGTTGGAAGTAATGGAAGTGGTGGGCGGAGTCAGCATTATGAGGTGAAAAAATCAATAAAAATCGACGAAAAATGAGCAACTTGAGCCTAGAAAAGGTCTGGTGGCCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTTTTACGTGAAATCAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCTCGTGAATTTATCGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>GAATTTTTACGTGAAATCAAAAGTTTGAATTTTCAAGTAAAAGTCGATATTTACTTTTACGTGAAAATTTTTCAAAAAAATCGATAAATTTCGAATTTTTTACGTAAAAATCGATTTTTAAGTTCACGTGAAAATTGTTCAAAAATCGATAAAATTGAATTTTTACGTGAAAATTCCAACTTTTACAATAATCGATTTTTACGTGAAAAATCGATAAATTCACGAGAA</canonical_amplicon>
		<polymorphic_amplicon>GAATTTTTACGTGAAATCAAAAGTTTGAATTTTCAAGTAAAAGTCGATATTTACTTTTACGTGAAAATTTTTCRAAAAAATCGATAAATTTCGAATTTTTTACGTAAAAATCGATTTTTAAGTTCACGTGAAAATTGTTCAAAAATCGATAAAATTGAATTTTTACGTGAAAATTCCAACTTTTACAATAATCGATTTTTACGTGAAAAATCGATAAATTCACGAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29525</snp_id>
        <super_contig>c004700889.Contig3</super_contig>
        <contig_pos>4108</contig_pos>
        <strand></strand>
        <context>AAATTTTTCR[A/T]AAAAATCGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGAATTTTCAAGTAAAAGTCGATATTTACTTTTACGTGAAAATTTTTCA</left_flank>
        <right_flank>AAAAATCGATAAATTTCGAATTTTTTACGTAAAAATCGATTTTTAAGTTC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATAAAAATTTCCCAAATTTCAGTGTTTTTTAGTTCAGATTTTGCCGATTTTTGTATATTCAAAGCGAGAAAAACCCGCTGAAAATCGTCAAAAAAATGAATTATTCTGAAATTTCAGCTCCTGATGACGTTCCTACTGTACTACTCCACCATCACCTCAATCGATCAATACTCAAAAACGGCGAGAACGAATCCGAACTATCATTCCACCGCGTTCATCATTTTCGCATTCATTACCTCGTGTTTCTATGCGATTATGGTGAATATATCTAATTCGCTCTATTGAGAAGACCTGTTCGGTGGACCGCGTTTGAATTTTTGAAAATTCAGAAAAATCGATAAAATTGGATTTTTCACGTGAAAATTCAAATTTTAAAAAAATCGATTTTTAAGTGAAAAATTTCATAAAATCGATAAAACTGGAATTTTTACGTGAAATCAAAAGTTTGAATTTTCAAGTAAAAGTCGATATTTACTTTTACGTGAAAATTTTTCAAAAAAATCGATAAATTTCGAATTTTTTACGTAAAAATCGATTTTTAAGTTCACGTGAAAATTGTTCAAAAATCGATAAAATTGAATTTTTACGTGAAAATTCCAACTTTTACAATAATCGATTTTTACGTGAAAAATCGATAAATTCACGAGAAAATCTATAAATTTGAATTTTCACGTAAAAAATCGAATCTCGAATTTCCGGTCGGAAAACGCGCTCCATCTCACACAACCTAATTTTTCCACGAAAAAATCGATAAGTGACCCTTTTCACAGCTCGTGATCCACTTCGCCACACTGTACTACATGATGATCTACCCAATCACCCCATTGACGTCTCCCTATACACTATCCAACGCGAATTACTCACAAATGAACTACGGACCATTGGGAGTTGGAAGTAATGGAAGTGGTGGGCGGAGTCAGCATTATGAGGTGAAAAAATCAATAAAAATCGACGAAAAATGAGCAACTTGAGCCTAGAAAAGGTCTGGTGGCCTAG</canonical>
            <polymorphic>AAAAATAAAAATTTCCCAAATTTCAGTGTTTTTTAGTTCAGATTTTGCCGATTTTTGTATATTCAAAGCGAGAAAAACCCGCTGAAAATCGTCAAAAAAATGAATTATTCTGAAATTTCAGCTCCTGATGACGTTCCTACTGTACTACTCCACCATCACCTCAATCGATCAATACTCAAAAACGGCGAGAACGAATCCGAACTATCATTCCACCGCGTTCATCATTTTCGCATTCATTACCTCGTGTTTCTATGCGATTATGGTGAATATATCTAATTCGCTCTATTGAGAAGACCTGTTCGGTGGACCGCGTTTGAATTTTTGAAAATTCAGAAAAATCGATAAAATTGGATTTTTCACGTGAAAATTCAAATTTTAAAAAAATCGATTTTTAAGTGAAAAATTTCATAAAATCGATAAAACTGGAATTTTTACGTGAAATCAAAAGTTTGAATTTTCAAGTAAAAGTCGATATTTACTTTTACGTGAAAATTTTTCAWAAAAATCGATAAATTTCGAATTTTTTACGTAAAAATCGATTTTTAAGTTCACGTGAAAATTGTTCAAAAATCGATAAAATTGAATTTTTACGTGAAAATTCCAACTTTTACAATAATCGATTTTTACGTGAAAAATCGATAAATTCACGAGAAAATCTATAAATTTGAATTTTCACGTAAAAAATCGAATCTCGAATTTCCGGTCGGAAAACGCGCTCCATCTCACACAACCTAATTTTTCCACGAAAAAATCGATAAGTGACCCTTTTCACAGCTCGTGATCCACTTCGCCACACTGTACTACATGATGATCTACCCAATCACCCCATTGACGTCTCCCTATACACTATCCAACGCGAATTACTCACAAATGAACTACGGACCATTGGGAGTTGGAAGTAATGGAAGTGGTGGGCGGAGTCAGCATTATGAGGTGAAAAAATCAATAAAAATCGACGAAAAATGAGCAACTTGAGCCTAGAAAAGGTCTGGTGGCCTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTTTTACGTGAAATCAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCTCGTGAATTTATCGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>GAATTTTTACGTGAAATCAAAAGTTTGAATTTTCAAGTAAAAGTCGATATTTACTTTTACGTGAAAATTTTTCAAAAAAATCGATAAATTTCGAATTTTTTACGTAAAAATCGATTTTTAAGTTCACGTGAAAATTGTTCAAAAATCGATAAAATTGAATTTTTACGTGAAAATTCCAACTTTTACAATAATCGATTTTTACGTGAAAAATCGATAAATTCACGAGAA</canonical_amplicon>
		<polymorphic_amplicon>GAATTTTTACGTGAAATCAAAAGTTTGAATTTTCAAGTAAAAGTCGATATTTACTTTTACGTGAAAATTTTTCAWAAAAATCGATAAATTTCGAATTTTTTACGTAAAAATCGATTTTTAAGTTCACGTGAAAATTGTTCAAAAATCGATAAAATTGAATTTTTACGTGAAAATTCCAACTTTTACAATAATCGATTTTTACGTGAAAAATCGATAAATTCACGAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29526</snp_id>
        <super_contig>c004700889.Contig3</super_contig>
        <contig_pos>8837</contig_pos>
        <strand></strand>
        <context>aaaataggac[G/A]aaaactaagc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTGTCTTAATTTGCTGATTCCAATAGTATGCTTTTCATCAAAATAGGAC</left_flank>
        <right_flank>AAAACTAAGCGAGTTACAGCTAGATTATCAATAGAGCGCATTTGCCAAAA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCTTTCATCTTCTGGGTCAATACCAAATGTCCACCGTACCATAGAACTGCAACAATGATGAATGATTGGAAGAGTTCGGAGACCCAAAGGAATCCGATGTAGGCGATGGCTTTAGTTCTGGTTACATCCAAAGTGTGGGTTAATTTTCCGTAGAATCGATCGGCTTCGACGTTCTCGCAAGCGAATGAACGGACGGTACGCATTGTGGAGAGCACTTCTTCAGCTACGTCGTTCGACTCGGCAATCGTGTCTTGGGTGCGTTCGGAGAGGAGCTGAATATGGTACAATTTTGTTCATTAGATTCTGCCAGTTTCGCTGACTTCAATAGTTTAGTTTTCATGAAAATTGGCCCACAACTAACAATGAGTAAGCGAGATATAGTCATAATTCTATTTTCGTGGTGAGACCCAAGTTTTCAAAAATTCTTGTTTTTAAAAATTGGGACATAATTGTCTTAATTTGCTGATTCCAATAGTATGCTTTTCATCAAAATAGGACGAAAACTAAGCGAGTTACAGCTAGATTATCAATAGAGCGCATTTGCCAAAACTCACATCATAATAAGTTCCGAAAATCTTCGAAGCAACGAAAATGATTGGAACAAGAATGAAAGTCACCAACGATAGTCGCCATGAGAGTTTCATCATGAAGATCATGGATCCGAGAAGCATCACGCAGTTTCTGAAACAAATTGTCAATGGAGCAAGGTTGCATCTTACTAAACAAAACTAGTTTTTAATTTTTGTATTGACACCTTTTTTGTGCAAATGCGCCCTAATGAGATACGCTCCATTTAATAATCCTTCCTCCAGATGCAAACTTAAATGTTTTTAATATCGTTATTTGGAAGGCAAAAAAATAAGGTTTAGACTTTTTCAATTAAACTGAAATTTGGCAAATACATTAAACAAAACAAGAGTTTCATGTTTGTAGTTGATACCTTTTTTGTGCAAATGCGCTCTAGCAAGATATGGTGCATAGAAGCGGGGCACCTCTAGA</canonical>
            <polymorphic>CGCTTTCATCTTCTGGGTCAATACCAAATGTCCACCGTACCATAGAACTGCAACAATGATGAATGATTGGAAGAGTTCGGAGACCCAAAGGAATCCGATGTAGGCGATGGCTTTAGTTCTGGTTACATCCAAAGTGTGGGTTAATTTTCCGTAGAATCGATCGGCTTCGACGTTCTCGCAAGCGAATGAACGGACGGTACGCATTGTGGAGAGCACTTCTTCAGCTACGTCGTTCGACTCGGCAATCGTGTCTTGGGTGCGTTCGGAGAGGAGCTGAATATGGTACAATTTTGTTCATTAGATTCTGCCAGTTTCGCTGACTTCAATAGTTTAGTTTTCATGAAAATTGGCCCACAACTAACAATGAGTAAGCGAGATATAGTCATAATTCTATTTTCGTGGTGAGACCCAAGTTTTCAAAAATTCTTGTTTTTAAAAATTGGGACATAATTGTCTTAATTTGCTGATTCCAATAGTATGCTTTTCATCAAAATAGGACRAAAACTAAGCGAGTTACAGCTAGATTATCAATAGAGCGCATTTGCCAAAACTCACATCATAATAAGTTCCGAAAATCTTCGAAGCAACGAAAATGATTGGAACAAGAATGAAAGTCACCAACGATAGTCGCCATGAGAGTTTCATCATGAAGATCATGGATCCGAGAAGCATCACGCAGTTTCTGAAACAAATTGTCAATGGAGCAAGGTTGCATCTTACTAAACAAAACTAGTTTTTAATTTTTGTATTGACACCTTTTTTGTGCAAATGCGCCCTAATGAGATACGCTCCATTTAATAATCCTTCCTCCAGATGCAAACTTAAATGTTTTTAATATCGTTATTTGGAAGGCAAAAAAATAAGGTTTAGACTTTTTCAATTAAACTGAAATTTGGCAAATACATTAAACAAAACAAGAGTTTCATGTTTGTAGTTGATACCTTTTTTGTGCAAATGCGCTCTAGCAAGATATGGTGCATAGAAGCGGGGCACCTCTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATAATTCTATTTTCGTGGTGAG</pcr_primer_p1>
		<pcr_primer_p2>ACTATCGTTGGTGACTTTCATT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CATAATTCTATTTTCGTGGTGAGACCCAAGTTTTCAAAAATTCTTGTTTTTAAAAATTGGGACATAATTGTCTTAATTTGCTGATTCCAATAGTATGCTTTTCATCAAAATAGGACGAAAACTAAGCGAGTTACAGCTAGATTATCAATAGAGCGCATTTGCCAAAACTCACATCATAATAAGTTCCGAAAATCTTCGAAGCAACGAAAATGATTGGAACAAGAATGAAAGTCACCAACGATAGT</canonical_amplicon>
		<polymorphic_amplicon>CATAATTCTATTTTCGTGGTGAGACCCAAGTTTTCAAAAATTCTTGTTTTTAAAAATTGGGACATAATTGTCTTAATTTGCTGATTCCAATAGTATGCTTTTCATCAAAATAGGACRAAAACTAAGCGAGTTACAGCTAGATTATCAATAGAGCGCATTTGCCAAAACTCACATCATAATAAGTTCCGAAAATCTTCGAAGCAACGAAAATGATTGGAACAAGAATGAAAGTCACCAACGATAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29527</snp_id>
        <super_contig>c004700889.Contig3</super_contig>
        <contig_pos>8926</contig_pos>
        <strand>+</strand>
        <context>TCGAAGCAAC[C/G]AAAATGATTG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CATTTGCCAAAACTCACATCATAATAAGTTCCGAAAATCTTCGAAGCAAC</left_flank>
        <right_flank>AAAATGATTGGAACAAGAATGAAAGTCACCAACGATAGTCGCCATGAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAATCCGATGTAGGCGATGGCTTTAGTTCTGGTTACATCCAAAGTGTGGGTTAATTTTCCGTAGAATCGATCGGCTTCGACGTTCTCGCAAGCGAATGAACGGACGGTACGCATTGTGGAGAGCACTTCTTCAGCTACGTCGTTCGACTCGGCAATCGTGTCTTGGGTGCGTTCGGAGAGGAGCTGAATATGGTACAATTTTGTTCATTAGATTCTGCCAGTTTCGCTGACTTCAATAGTTTAGTTTTCATGAAAATTGGCCCACAACTAACAATGAGTAAGCGAGATATAGTCATAATTCTATTTTCGTGGTGAGACCCAAGTTTTCAAAAATTCTTGTTTTTAAAAATTGGGACATAATTGTCTTAATTTGCTGATTCCAATAGTATGCTTTTCATCAAAATAGGACGAAAACTAAGCGAGTTACAGCTAGATTATCAATAGAGCGCATTTGCCAAAACTCACATCATAATAAGTTCCGAAAATCTTCGAAGCAACGAAAATGATTGGAACAAGAATGAAAGTCACCAACGATAGTCGCCATGAGAGTTTCATCATGAAGATCATGGATCCGAGAAGCATCACGCAGTTTCTGAAACAAATTGTCAATGGAGCAAGGTTGCATCTTACTAAACAAAACTAGTTTTTAATTTTTGTATTGACACCTTTTTTGTGCAAATGCGCCCTAATGAGATACGCTCCATTTAATAATCCTTCCTCCAGATGCAAACTTAAATGTTTTTAATATCGTTATTTGGAAGGCAAAAAAATAAGGTTTAGACTTTTTCAATTAAACTGAAATTTGGCAAATACATTAAACAAAACAAGAGTTTCATGTTTGTAGTTGATACCTTTTTTGTGCAAATGCGCTCTAGCAAGATATGGTGCATAGAAGCGGGGCACCTCTAGAAAGGGGAGGAAGCGGCGCGGCTGACCACTTCCACATGGTATATCTCATCAGAGCGCATTTGCACGAGAAAGTTGTCAACTACAAAAATG</canonical>
            <polymorphic>GGAATCCGATGTAGGCGATGGCTTTAGTTCTGGTTACATCCAAAGTGTGGGTTAATTTTCCGTAGAATCGATCGGCTTCGACGTTCTCGCAAGCGAATGAACGGACGGTACGCATTGTGGAGAGCACTTCTTCAGCTACGTCGTTCGACTCGGCAATCGTGTCTTGGGTGCGTTCGGAGAGGAGCTGAATATGGTACAATTTTGTTCATTAGATTCTGCCAGTTTCGCTGACTTCAATAGTTTAGTTTTCATGAAAATTGGCCCACAACTAACAATGAGTAAGCGAGATATAGTCATAATTCTATTTTCGTGGTGAGACCCAAGTTTTCAAAAATTCTTGTTTTTAAAAATTGGGACATAATTGTCTTAATTTGCTGATTCCAATAGTATGCTTTTCATCAAAATAGGACGAAAACTAAGCGAGTTACAGCTAGATTATCAATAGAGCGCATTTGCCAAAACTCACATCATAATAAGTTCCGAAAATCTTCGAAGCAACSAAAATGATTGGAACAAGAATGAAAGTCACCAACGATAGTCGCCATGAGAGTTTCATCATGAAGATCATGGATCCGAGAAGCATCACGCAGTTTCTGAAACAAATTGTCAATGGAGCAAGGTTGCATCTTACTAAACAAAACTAGTTTTTAATTTTTGTATTGACACCTTTTTTGTGCAAATGCGCCCTAATGAGATACGCTCCATTTAATAATCCTTCCTCCAGATGCAAACTTAAATGTTTTTAATATCGTTATTTGGAAGGCAAAAAAATAAGGTTTAGACTTTTTCAATTAAACTGAAATTTGGCAAATACATTAAACAAAACAAGAGTTTCATGTTTGTAGTTGATACCTTTTTTGTGCAAATGCGCTCTAGCAAGATATGGTGCATAGAAGCGGGGCACCTCTAGAAAGGGGAGGAAGCGGCGCGGCTGACCACTTCCACATGGTATATCTCATCAGAGCGCATTTGCACGAGAAAGTTGTCAACTACAAAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTTAATTTGCTGATTCCAATA</pcr_primer_p1>
		<pcr_primer_p2>CCATTGACAATTTGTTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCTTAATTTGCTGATTCCAATAGTATGCTTTTCATCAAAATAGGACGAAAACTAAGCGAGTTACAGCTAGATTATCAATAGAGCGCATTTGCCAAAACTCACATCATAATAAGTTCCGAAAATCTTCGAAGCAACGAAAATGATTGGAACAAGAATGAAAGTCACCAACGATAGTCGCCATGAGAGTTTCATCATGAAGATCATGGATCCGAGAAGCATCACGCAGTTTCTGAAACAAATTGTCAATGG</canonical_amplicon>
		<polymorphic_amplicon>GTCTTAATTTGCTGATTCCAATAGTATGCTTTTCATCAAAATAGGACGAAAACTAAGCGAGTTACAGCTAGATTATCAATAGAGCGCATTTGCCAAAACTCACATCATAATAAGTTCCGAAAATCTTCGAAGCAACSAAAATGATTGGAACAAGAATGAAAGTCACCAACGATAGTCGCCATGAGAGTTTCATCATGAAGATCATGGATCCGAGAAGCATCACGCAGTTTCTGAAACAAATTGTCAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29528</snp_id>
        <super_contig>c004700889.Contig3</super_contig>
        <contig_pos>9076</contig_pos>
        <strand></strand>
        <context>actagttttt[A/C]atttttgtat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAAATTGTCAATGGAGCAAGGTTGCATCTTACTAAACAAAACTAGTTTTT</left_flank>
        <right_flank>ATTTTTGTATTGACACCTTTTTTGTGCAAATGCGCCCTAATGAGATACGC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGCAATCGTGTCTTGGGTGCGTTCGGAGAGGAGCTGAATATGGTACAATTTTGTTCATTAGATTCTGCCAGTTTCGCTGACTTCAATAGTTTAGTTTTCATGAAAATTGGCCCACAACTAACAATGAGTAAGCGAGATATAGTCATAATTCTATTTTCGTGGTGAGACCCAAGTTTTCAAAAATTCTTGTTTTTAAAAATTGGGACATAATTGTCTTAATTTGCTGATTCCAATAGTATGCTTTTCATCAAAATAGGACGAAAACTAAGCGAGTTACAGCTAGATTATCAATAGAGCGCATTTGCCAAAACTCACATCATAATAAGTTCCGAAAATCTTCGAAGCAACGAAAATGATTGGAACAAGAATGAAAGTCACCAACGATAGTCGCCATGAGAGTTTCATCATGAAGATCATGGATCCGAGAAGCATCACGCAGTTTCTGAAACAAATTGTCAATGGAGCAAGGTTGCATCTTACTAAACAAAACTAGTTTTTAATTTTTGTATTGACACCTTTTTTGTGCAAATGCGCCCTAATGAGATACGCTCCATTTAATAATCCTTCCTCCAGATGCAAACTTAAATGTTTTTAATATCGTTATTTGGAAGGCAAAAAAATAAGGTTTAGACTTTTTCAATTAAACTGAAATTTGGCAAATACATTAAACAAAACAAGAGTTTCATGTTTGTAGTTGATACCTTTTTTGTGCAAATGCGCTCTAGCAAGATATGGTGCATAGAAGCGGGGCACCTCTAGAAAGGGGAGGAAGCGGCGCGGCTGACCACTTCCACATGGTATATCTCATCAGAGCGCATTTGCACGAGAAAGTTGTCAACTACAAAAATGAAGCTCTAGTTTTGTTTAGTAGGTTGTTATTGTTCCAAGACAATGTGAAAAATTGACAACAGTTACAGCCGCCGTTGGCCAACCAACGGTCGTTTTAAAGGACCCGGACCACCCAAAACTTACAAACCTCAAAAAGACATTGACATTAAG</canonical>
            <polymorphic>CGGCAATCGTGTCTTGGGTGCGTTCGGAGAGGAGCTGAATATGGTACAATTTTGTTCATTAGATTCTGCCAGTTTCGCTGACTTCAATAGTTTAGTTTTCATGAAAATTGGCCCACAACTAACAATGAGTAAGCGAGATATAGTCATAATTCTATTTTCGTGGTGAGACCCAAGTTTTCAAAAATTCTTGTTTTTAAAAATTGGGACATAATTGTCTTAATTTGCTGATTCCAATAGTATGCTTTTCATCAAAATAGGACGAAAACTAAGCGAGTTACAGCTAGATTATCAATAGAGCGCATTTGCCAAAACTCACATCATAATAAGTTCCGAAAATCTTCGAAGCAACGAAAATGATTGGAACAAGAATGAAAGTCACCAACGATAGTCGCCATGAGAGTTTCATCATGAAGATCATGGATCCGAGAAGCATCACGCAGTTTCTGAAACAAATTGTCAATGGAGCAAGGTTGCATCTTACTAAACAAAACTAGTTTTTMATTTTTGTATTGACACCTTTTTTGTGCAAATGCGCCCTAATGAGATACGCTCCATTTAATAATCCTTCCTCCAGATGCAAACTTAAATGTTTTTAATATCGTTATTTGGAAGGCAAAAAAATAAGGTTTAGACTTTTTCAATTAAACTGAAATTTGGCAAATACATTAAACAAAACAAGAGTTTCATGTTTGTAGTTGATACCTTTTTTGTGCAAATGCGCTCTAGCAAGATATGGTGCATAGAAGCGGGGCACCTCTAGAAAGGGGAGGAAGCGGCGCGGCTGACCACTTCCACATGGTATATCTCATCAGAGCGCATTTGCACGAGAAAGTTGTCAACTACAAAAATGAAGCTCTAGTTTTGTTTAGTAGGTTGTTATTGTTCCAAGACAATGTGAAAAATTGACAACAGTTACAGCCGCCGTTGGCCAACCAACGGTCGTTTTAAAGGACCCGGACCACCCAAAACTTACAAACCTCAAAAAGACATTGACATTAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>281 279 194 58 51 49 27 24 23 10 4</canonical_bands>
                <polymorphic_bands>339 279 194 51 49 27 24 23 10 4</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>250 233 140 100 58 48 47 42 35 16 11 11 9</canonical_bands>
                <polymorphic_bands>250 233 188 100 58 47 42 35 16 11 11 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAGTCGCCATGAGAGTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTGTAAGTTTTGGGTGGTC</pcr_primer_p2>
		<pcr_amplicon_size>592</pcr_amplicon_size>
		<canonical_amplicon>ATAGTCGCCATGAGAGTTTCATCATGAAGATCATGGATCCGAGAAGCATCACGCAGTTTCTGAAACAAATTGTCAATGGAGCAAGGTTGCATCTTACTAAACAAAACTAGTTTTTAATTTTTGTATTGACACCTTTTTTGTGCAAATGCGCCCTAATGAGATACGCTCCATTTAATAATCCTTCCTCCAGATGCAAACTTAAATGTTTTTAATATCGTTATTTGGAAGGCAAAAAAATAAGGTTTAGACTTTTTCAATTAAACTGAAATTTGGCAAATACATTAAACAAAACAAGAGTTTCATGTTTGTAGTTGATACCTTTTTTGTGCAAATGCGCTCTAGCAAGATATGGTGCATAGAAGCGGGGCACCTCTAGAAAGGGGAGGAAGCGGCGCGGCTGACCACTTCCACATGGTATATCTCATCAGAGCGCATTTGCACGAGAAAGTTGTCAACTACAAAAATGAAGCTCTAGTTTTGTTTAGTAGGTTGTTATTGTTCCAAGACAATGTGAAAAATTGACAACAGTTACAGCCGCCGTTGGCCAACCAACGGTCGTTTTAAAGGACCCGGACCACCCAAAACTTACAAA</canonical_amplicon>
		<polymorphic_amplicon>ATAGTCGCCATGAGAGTTTCATCATGAAGATCATGGATCCGAGAAGCATCACGCAGTTTCTGAAACAAATTGTCAATGGAGCAAGGTTGCATCTTACTAAACAAAACTAGTTTTTMATTTTTGTATTGACACCTTTTTTGTGCAAATGCGCCCTAATGAGATACGCTCCATTTAATAATCCTTCCTCCAGATGCAAACTTAAATGTTTTTAATATCGTTATTTGGAAGGCAAAAAAATAAGGTTTAGACTTTTTCAATTAAACTGAAATTTGGCAAATACATTAAACAAAACAAGAGTTTCATGTTTGTAGTTGATACCTTTTTTGTGCAAATGCGCTCTAGCAAGATATGGTGCATAGAAGCGGGGCACCTCTAGAAAGGGGAGGAAGCGGCGCGGCTGACCACTTCCACATGGTATATCTCATCAGAGCGCATTTGCACGAGAAAGTTGTCAACTACAAAAATGAAGCTCTAGTTTTGTTTAGTAGGTTGTTATTGTTCCAAGACAATGTGAAAAATTGACAACAGTTACAGCCGCCGTTGGCCAACCAACGGTCGTTTTAAAGGACCCGGACCACCCAAAACTTACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29529</snp_id>
        <super_contig>c004700889.Contig3</super_contig>
        <contig_pos>13474</contig_pos>
        <strand>+</strand>
        <context>GGGACTAATT[C/T]TGAATTCCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGTGAAAATCAAAATTTCATCCAAAAAAGGAGTTCTTTGGGACTAATT</left_flank>
        <right_flank>TGAATTCCATCGATTTTTTGGCATGTCTTTTGTTCGCTTGTCTACACGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGGATTTTCAGAAATTTTTCAAAAAAAATTTTTTTTTTTGAAATTTCCTTTTTTTTTTTGGGAAAAAAGAAAAATTGGGCAAAATTGTAAATTGACAGTTGAAATCTTTCGTTTCGCTGCTGCTTATCAGTTACTGATAAGAGAGAGAGAGGGAGAAAGAGTATTTGGAAAGTTGCAATTTGTGTGTGCTCCCCCAAAAGTCATTAGAATTATTATTATTATCAATTTGGGGGTTTTTGGAAAGTTCTGGAAAATCTGGAAAATTAAAAAAATGGATGTTTTATAAATGAATCAAAGAATACACAGTTTTCTAGATCGAGGAGAGGGAAAAAATAAAAAAATCGATAATTTATTTGTTATTGATGAGACGATTGGCGACGGTGTTCACACTCGATGGCACGTTTTCGATGGTGGTGAAGACCTGGAAATTGCAGAATTTTCAGTAAATTTGTGAAAATCAAAATTTCATCCAAAAAAGGAGTTCTTTGGGACTAATTCTGAATTCCATCGATTTTTTGGCATGTCTTTTGTTCGCTTGTCTACACGATGACTAAACGCGCTCTATCGGACTGATTAGTGTAAGCAAAAATTGAAAGTGCGCCCTAATGAGATTTTCCAAAAAAATTTGGCCAACGCGCTCTATCGAAATCATTGGGGAAAAGTAGGAAATGTGCTTTCTAGAAAACACTTGAAATTGCTCTTTTCTGAACATAGATTTTAGAAAGTGCGCTCTATTGAGAGTTTGCTGTAAACGAGCTCTACCGGACTGAGAAAATTGGAACTGTTAAAATGACAAACGCGCTCCAATGAACAAGAGTTTTAGAAAGTACGCTCTATTAATAATATTCTGAAGAACGGGGTAAACGCGTTCCATCAGACTGATTCGTGGAATCTGAGGATTAGAAAGTGCGCTCTATCGAACTTTCTAGAAAAACAGTTGAAAATGTGCTCTACCGAACTCAGTGGAAGTGCGCTCTATTTATAATTTGCTGAAAAAG</canonical>
            <polymorphic>TTTGGATTTTCAGAAATTTTTCAAAAAAAATTTTTTTTTTTGAAATTTCCTTTTTTTTTTTGGGAAAAAAGAAAAATTGGGCAAAATTGTAAATTGACAGTTGAAATCTTTCGTTTCGCTGCTGCTTATCAGTTACTGATAAGAGAGAGAGAGGGAGAAAGAGTATTTGGAAAGTTGCAATTTGTGTGTGCTCCCCCAAAAGTCATTAGAATTATTATTATTATCAATTTGGGGGTTTTTGGAAAGTTCTGGAAAATCTGGAAAATTAAAAAAATGGATGTTTTATAAATGAATCAAAGAATACACAGTTTTCTAGATCGAGGAGAGGGAAAAAATAAAAAAATCGATAATTTATTTGTTATTGATGAGACGATTGGCGACGGTGTTCACACTCGATGGCACGTTTTCGATGGTGGTGAAGACCTGGAAATTGCAGAATTTTCAGTAAATTTGTGAAAATCAAAATTTCATCCAAAAAAGGAGTTCTTTGGGACTAATTYTGAATTCCATCGATTTTTTGGCATGTCTTTTGTTCGCTTGTCTACACGATGACTAAACGCGCTCTATCGGACTGATTAGTGTAAGCAAAAATTGAAAGTGCGCCCTAATGAGATTTTCCAAAAAAATTTGGCCAACGCGCTCTATCGAAATCATTGGGGAAAAGTAGGAAATGTGCTTTCTAGAAAACACTTGAAATTGCTCTTTTCTGAACATAGATTTTAGAAAGTGCGCTCTATTGAGAGTTTGCTGTAAACGAGCTCTACCGGACTGAGAAAATTGGAACTGTTAAAATGACAAACGCGCTCCAATGAACAAGAGTTTTAGAAAGTACGCTCTATTAATAATATTCTGAAGAACGGGGTAAACGCGTTCCATCAGACTGATTCGTGGAATCTGAGGATTAGAAAGTGCGCTCTATCGAACTTTCTAGAAAAACAGTTGAAAATGTGCTCTACCGAACTCAGTGGAAGTGCGCTCTATTTATAATTTGCTGAAAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>489 143 139 104 68 27 18 12</canonical_bands>
                <polymorphic_bands>557 143 139 104 27 18 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTGTTATTGATGAGACGATTG</pcr_primer_p1>
		<pcr_primer_p2>CACTTTCAATTTTTGCTTACACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTTGTTATTGATGAGACGATTGGCGACGGTGTTCACACTCGATGGCACGTTTTCGATGGTGGTGAAGACCTGGAAATTGCAGAATTTTCAGTAAATTTGTGAAAATCAAAATTTCATCCAAAAAAGGAGTTCTTTGGGACTAATTCTGAATTCCATCGATTTTTTGGCATGTCTTTTGTTCGCTTGTCTACACGATGACTAAACGCGCTCTATCGGACTGATTAGTGTAAGCAAAAATTGAAAGTG</canonical_amplicon>
		<polymorphic_amplicon>ATTTGTTATTGATGAGACGATTGGCGACGGTGTTCACACTCGATGGCACGTTTTCGATGGTGGTGAAGACCTGGAAATTGCAGAATTTTCAGTAAATTTGTGAAAATCAAAATTTCATCCAAAAAAGGAGTTCTTTGGGACTAATTYTGAATTCCATCGATTTTTTGGCATGTCTTTTGTTCGCTTGTCTACACGATGACTAAACGCGCTCTATCGGACTGATTAGTGTAAGCAAAAATTGAAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29530</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>13262</contig_pos>
        <strand></strand>
        <context>caaaatacaa[T/A]ataacccccg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CACATTATGACATTCCAAATTCTGTGAACGCCATTCAATTCAAAATACAA</left_flank>
        <right_flank>ATAACCCCCGCTACAATTTTTCATGTCTCTACCTCTTTTTACACTCCCGT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAGAGAATCATGTATTTTGTGAAGAACGAAGGCGATCGCATCTAAAAACTTTTATAATTTCCTTTTAGGAAAGTATTCAGTAAACTATTGACAAATTTACATGTCTATCCGAGTATTTTCGGGAATTCTGAATATGTTACCATAATTTTGGACCACCCTGTACAGTGCGTTCGGTTTTGAGGGTTCTGAACAAAACTGAAAATAATATCGAAGTTAGATTTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCTTCACGAGGAGCGCCTAATAAGTAAAAAGAAACAAATAATGGAAAACGGGAAGAATTATATACAGTAAAATATATGTGTTAAAAATAAGGATTACAGCTAGTAGCGAGAAATAGATGAACGGGGTGAGGACGGGGTGAGGAATCGGGGTACATTGGCAGTTATGGCATTCCACATTATGACATTCCAAATTCTGTGAACGCCATTCAATTCAAAATACAATATAACCCCCGCTACAATTTTTCATGTCTCTACCTCTTTTTACACTCCCGTACTAACAAAAATACTCTCCTGTAGGCGTCTAATAATTATAGGACCCCCAGAAAAATGAAAAATGTAAAGTTTTTAGGCAACGAAATTGGACGTTTTCTGTTGGAAACTGTTACAATAGTTTTAAAACATTATATTTTGATCGTTTAAACAATAGTTGAACCCTCTCTTCGAGTTTTAGAAAAAATTATTTTCAGAGATTTTCGTCATTTTTTGAGTTTTCGAAACAAATAACTTTGGTCCTGGGTAACATTTTGCCCTGAAATTGATAGTAACTCTTTTTACAGTGGTCTGGATTGCCCAGTAATTGTTTTTAGATCATTCTGAGCCGTTGTTTGTAATTTAAGCAAAACTGTAATTTAAGTTATTTTGTATTTTGAATCGAATGGCGTTTACAAATTTTGATATCATTTTTAGTTTTTTCAGAACCCTCGAAATCGAGGGGGTCCTATA</canonical>
            <polymorphic>CAAAGAGAATCATGTATTTTGTGAAGAACGAAGGCGATCGCATCTAAAAACTTTTATAATTTCCTTTTAGGAAAGTATTCAGTAAACTATTGACAAATTTACATGTCTATCCGAGTATTTTCGGGAATTCTGAATATGTTACCATAATTTTGGACCACCCTGTACAGTGCGTTCGGTTTTGAGGGTTCTGAACAAAACTGAAAATAATATCGAAGTTAGATTTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCTTCACGAGGAGCGCCTAATAAGTAAAAAGAAACAAATAATGGAAAACGGGAAGAATTATATACAGTAAAATATATGTGTTAAAAATAAGGATTACAGCTAGTAGCGAGAAATAGATGAACGGGGTGAGGACGGGGTGAGGAATCGGGGTACATTGGCAGTTATGGCATTCCACATTATGACATTCCAAATTCTGTGAACGCCATTCAATTCAAAATACAAWATAACCCCCGCTACAATTTTTCATGTCTCTACCTCTTTTTACACTCCCGTACTAACAAAAATACTCTCCTGTAGGCGTCTAATAATTATAGGACCCCCAGAAAAATGAAAAATGTAAAGTTTTTAGGCAACGAAATTGGACGTTTTCTGTTGGAAACTGTTACAATAGTTTTAAAACATTATATTTTGATCGTTTAAACAATAGTTGAACCCTCTCTTCGAGTTTTAGAAAAAATTATTTTCAGAGATTTTCGTCATTTTTTGAGTTTTCGAAACAAATAACTTTGGTCCTGGGTAACATTTTGCCCTGAAATTGATAGTAACTCTTTTTACAGTGGTCTGGATTGCCCAGTAATTGTTTTTAGATCATTCTGAGCCGTTGTTTGTAATTTAAGCAAAACTGTAATTTAAGTTATTTTGTATTTTGAATCGAATGGCGTTTACAAATTTTGATATCATTTTTAGTTTTTTCAGAACCCTCGAAATCGAGGGGGTCCTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAAACTGAAAATAATATCGAAGT</pcr_primer_p1>
		<pcr_primer_p2>TGTAACAGTTTCCAACAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>473</pcr_amplicon_size>
		<canonical_amplicon>ACAAAACTGAAAATAATATCGAAGTTAGATTTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCTTCACGAGGAGCGCCTAATAAGTAAAAAGAAACAAATAATGGAAAACGGGAAGAATTATATACAGTAAAATATATGTGTTAAAAATAAGGATTACAGCTAGTAGCGAGAAATAGATGAACGGGGTGAGGACGGGGTGAGGAATCGGGGTACATTGGCAGTTATGGCATTCCACATTATGACATTCCAAATTCTGTGAACGCCATTCAATTCAAAATACAATATAACCCCCGCTACAATTTTTCATGTCTCTACCTCTTTTTACACTCCCGTACTAACAAAAATACTCTCCTGTAGGCGTCTAATAATTATAGGACCCCCAGAAAAATGAAAAATGTAAAGTTTTTAGGCAACGAAATTGGACGTTTTCTGTTGGAAACTGTTACA</canonical_amplicon>
		<polymorphic_amplicon>ACAAAACTGAAAATAATATCGAAGTTAGATTTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCTTCACGAGGAGCGCCTAATAAGTAAAAAGAAACAAATAATGGAAAACGGGAAGAATTATATACAGTAAAATATATGTGTTAAAAATAAGGATTACAGCTAGTAGCGAGAAATAGATGAACGGGGTGAGGACGGGGTGAGGAATCGGGGTACATTGGCAGTTATGGCATTCCACATTATGACATTCCAAATTCTGTGAACGCCATTCAATTCAAAATACAAWATAACCCCCGCTACAATTTTTCATGTCTCTACCTCTTTTTACACTCCCGTACTAACAAAAATACTCTCCTGTAGGCGTCTAATAATTATAGGACCCCCAGAAAAATGAAAAATGTAAAGTTTTTAGGCAACGAAATTGGACGTTTTCTGTTGGAAACTGTTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29531</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>13334</contig_pos>
        <strand></strand>
        <context>tactctcctg[T/C]aggcgtctaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CATGTCTCTACCTCTTTTTACACTCCCGTACTAACAAAAATACTCTCCTG</left_flank>
        <right_flank>AGGCGTCTAATAATTATAGGACCCCCAGAAAAATGAAAAATGTAAAGTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTATTCAGTAAACTATTGACAAATTTACATGTCTATCCGAGTATTTTCGGGAATTCTGAATATGTTACCATAATTTTGGACCACCCTGTACAGTGCGTTCGGTTTTGAGGGTTCTGAACAAAACTGAAAATAATATCGAAGTTAGATTTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCTTCACGAGGAGCGCCTAATAAGTAAAAAGAAACAAATAATGGAAAACGGGAAGAATTATATACAGTAAAATATATGTGTTAAAAATAAGGATTACAGCTAGTAGCGAGAAATAGATGAACGGGGTGAGGACGGGGTGAGGAATCGGGGTACATTGGCAGTTATGGCATTCCACATTATGACATTCCAAATTCTGTGAACGCCATTCAATTCAAAATACAATATAACCCCCGCTACAATTTTTCATGTCTCTACCTCTTTTTACACTCCCGTACTAACAAAAATACTCTCCTGTAGGCGTCTAATAATTATAGGACCCCCAGAAAAATGAAAAATGTAAAGTTTTTAGGCAACGAAATTGGACGTTTTCTGTTGGAAACTGTTACAATAGTTTTAAAACATTATATTTTGATCGTTTAAACAATAGTTGAACCCTCTCTTCGAGTTTTAGAAAAAATTATTTTCAGAGATTTTCGTCATTTTTTGAGTTTTCGAAACAAATAACTTTGGTCCTGGGTAACATTTTGCCCTGAAATTGATAGTAACTCTTTTTACAGTGGTCTGGATTGCCCAGTAATTGTTTTTAGATCATTCTGAGCCGTTGTTTGTAATTTAAGCAAAACTGTAATTTAAGTTATTTTGTATTTTGAATCGAATGGCGTTTACAAATTTTGATATCATTTTTAGTTTTTTCAGAACCCTCGAAATCGAGGGGGTCCTATAATTATTGGACGCACTGTATAAGAATTTCCGTAATTTCAGTTCAATCAGCCTACTTCTCGTGATGTTGTACCA</canonical>
            <polymorphic>AAGTATTCAGTAAACTATTGACAAATTTACATGTCTATCCGAGTATTTTCGGGAATTCTGAATATGTTACCATAATTTTGGACCACCCTGTACAGTGCGTTCGGTTTTGAGGGTTCTGAACAAAACTGAAAATAATATCGAAGTTAGATTTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCTTCACGAGGAGCGCCTAATAAGTAAAAAGAAACAAATAATGGAAAACGGGAAGAATTATATACAGTAAAATATATGTGTTAAAAATAAGGATTACAGCTAGTAGCGAGAAATAGATGAACGGGGTGAGGACGGGGTGAGGAATCGGGGTACATTGGCAGTTATGGCATTCCACATTATGACATTCCAAATTCTGTGAACGCCATTCAATTCAAAATACAATATAACCCCCGCTACAATTTTTCATGTCTCTACCTCTTTTTACACTCCCGTACTAACAAAAATACTCTCCTGYAGGCGTCTAATAATTATAGGACCCCCAGAAAAATGAAAAATGTAAAGTTTTTAGGCAACGAAATTGGACGTTTTCTGTTGGAAACTGTTACAATAGTTTTAAAACATTATATTTTGATCGTTTAAACAATAGTTGAACCCTCTCTTCGAGTTTTAGAAAAAATTATTTTCAGAGATTTTCGTCATTTTTTGAGTTTTCGAAACAAATAACTTTGGTCCTGGGTAACATTTTGCCCTGAAATTGATAGTAACTCTTTTTACAGTGGTCTGGATTGCCCAGTAATTGTTTTTAGATCATTCTGAGCCGTTGTTTGTAATTTAAGCAAAACTGTAATTTAAGTTATTTTGTATTTTGAATCGAATGGCGTTTACAAATTTTGATATCATTTTTAGTTTTTTCAGAACCCTCGAAATCGAGGGGGTCCTATAATTATTGGACGCACTGTATAAGAATTTCCGTAATTTCAGTTCAATCAGCCTACTTCTCGTGATGTTGTACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAAACTGAAAATAATATCGAAGT</pcr_primer_p1>
		<pcr_primer_p2>TGTAACAGTTTCCAACAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>473</pcr_amplicon_size>
		<canonical_amplicon>ACAAAACTGAAAATAATATCGAAGTTAGATTTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCTTCACGAGGAGCGCCTAATAAGTAAAAAGAAACAAATAATGGAAAACGGGAAGAATTATATACAGTAAAATATATGTGTTAAAAATAAGGATTACAGCTAGTAGCGAGAAATAGATGAACGGGGTGAGGACGGGGTGAGGAATCGGGGTACATTGGCAGTTATGGCATTCCACATTATGACATTCCAAATTCTGTGAACGCCATTCAATTCAAAATACAATATAACCCCCGCTACAATTTTTCATGTCTCTACCTCTTTTTACACTCCCGTACTAACAAAAATACTCTCCTGTAGGCGTCTAATAATTATAGGACCCCCAGAAAAATGAAAAATGTAAAGTTTTTAGGCAACGAAATTGGACGTTTTCTGTTGGAAACTGTTACA</canonical_amplicon>
		<polymorphic_amplicon>ACAAAACTGAAAATAATATCGAAGTTAGATTTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCTTCACGAGGAGCGCCTAATAAGTAAAAAGAAACAAATAATGGAAAACGGGAAGAATTATATACAGTAAAATATATGTGTTAAAAATAAGGATTACAGCTAGTAGCGAGAAATAGATGAACGGGGTGAGGACGGGGTGAGGAATCGGGGTACATTGGCAGTTATGGCATTCCACATTATGACATTCCAAATTCTGTGAACGCCATTCAATTCAAAATACAATATAACCCCCGCTACAATTTTTCATGTCTCTACCTCTTTTTACACTCCCGTACTAACAAAAATACTCTCCTGYAGGCGTCTAATAATTATAGGACCCCCAGAAAAATGAAAAATGTAAAGTTTTTAGGCAACGAAATTGGACGTTTTCTGTTGGAAACTGTTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29532</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>13379</contig_pos>
        <strand></strand>
        <context>GAAAAATGTA[A/T]AGTTTTTAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCTGTAGGCGTCTAATAATTATAGGACCCCCAGAAAAATGAAAAATGTA</left_flank>
        <right_flank>AGTTTTTAGGCAACGAAATTGGACGTTTTCTGTTGGAAACTGTTACAATA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCGGGAATTCTGAATATGTTACCATAATTTTGGACCACCCTGTACAGTGCGTTCGGTTTTGAGGGTTCTGAACAAAACTGAAAATAATATCGAAGTTAGATTTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCTTCACGAGGAGCGCCTAATAAGTAAAAAGAAACAAATAATGGAAAACGGGAAGAATTATATACAGTAAAATATATGTGTTAAAAATAAGGATTACAGCTAGTAGCGAGAAATAGATGAACGGGGTGAGGACGGGGTGAGGAATCGGGGTACATTGGCAGTTATGGCATTCCACATTATGACATTCCAAATTCTGTGAACGCCATTCAATTCAAAATACAATATAACCCCCGCTACAATTTTTCATGTCTCTACCTCTTTTTACACTCCCGTACTAACAAAAATACTCTCCTGTAGGCGTCTAATAATTATAGGACCCCCAGAAAAATGAAAAATGTAAAGTTTTTAGGCAACGAAATTGGACGTTTTCTGTTGGAAACTGTTACAATAGTTTTAAAACATTATATTTTGATCGTTTAAACAATAGTTGAACCCTCTCTTCGAGTTTTAGAAAAAATTATTTTCAGAGATTTTCGTCATTTTTTGAGTTTTCGAAACAAATAACTTTGGTCCTGGGTAACATTTTGCCCTGAAATTGATAGTAACTCTTTTTACAGTGGTCTGGATTGCCCAGTAATTGTTTTTAGATCATTCTGAGCCGTTGTTTGTAATTTAAGCAAAACTGTAATTTAAGTTATTTTGTATTTTGAATCGAATGGCGTTTACAAATTTTGATATCATTTTTAGTTTTTTCAGAACCCTCGAAATCGAGGGGGTCCTATAATTATTGGACGCACTGTATAAGAATTTCCGTAATTTCAGTTCAATCAGCCTACTTCTCGTGATGTTGTACCATTGCCATATAGTGAAGGGGTCGAGCAATGCAGTTTGCTTGGAGCT</canonical>
            <polymorphic>TTTTCGGGAATTCTGAATATGTTACCATAATTTTGGACCACCCTGTACAGTGCGTTCGGTTTTGAGGGTTCTGAACAAAACTGAAAATAATATCGAAGTTAGATTTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCTTCACGAGGAGCGCCTAATAAGTAAAAAGAAACAAATAATGGAAAACGGGAAGAATTATATACAGTAAAATATATGTGTTAAAAATAAGGATTACAGCTAGTAGCGAGAAATAGATGAACGGGGTGAGGACGGGGTGAGGAATCGGGGTACATTGGCAGTTATGGCATTCCACATTATGACATTCCAAATTCTGTGAACGCCATTCAATTCAAAATACAATATAACCCCCGCTACAATTTTTCATGTCTCTACCTCTTTTTACACTCCCGTACTAACAAAAATACTCTCCTGTAGGCGTCTAATAATTATAGGACCCCCAGAAAAATGAAAAATGTAWAGTTTTTAGGCAACGAAATTGGACGTTTTCTGTTGGAAACTGTTACAATAGTTTTAAAACATTATATTTTGATCGTTTAAACAATAGTTGAACCCTCTCTTCGAGTTTTAGAAAAAATTATTTTCAGAGATTTTCGTCATTTTTTGAGTTTTCGAAACAAATAACTTTGGTCCTGGGTAACATTTTGCCCTGAAATTGATAGTAACTCTTTTTACAGTGGTCTGGATTGCCCAGTAATTGTTTTTAGATCATTCTGAGCCGTTGTTTGTAATTTAAGCAAAACTGTAATTTAAGTTATTTTGTATTTTGAATCGAATGGCGTTTACAAATTTTGATATCATTTTTAGTTTTTTCAGAACCCTCGAAATCGAGGGGGTCCTATAATTATTGGACGCACTGTATAAGAATTTCCGTAATTTCAGTTCAATCAGCCTACTTCTCGTGATGTTGTACCATTGCCATATAGTGAAGGGGTCGAGCAATGCAGTTTGCTTGGAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAAACTGAAAATAATATCGAAGT</pcr_primer_p1>
		<pcr_primer_p2>TGACGAAAATCTCTGAAAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>565</pcr_amplicon_size>
		<canonical_amplicon>ACAAAACTGAAAATAATATCGAAGTTAGATTTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCTTCACGAGGAGCGCCTAATAAGTAAAAAGAAACAAATAATGGAAAACGGGAAGAATTATATACAGTAAAATATATGTGTTAAAAATAAGGATTACAGCTAGTAGCGAGAAATAGATGAACGGGGTGAGGACGGGGTGAGGAATCGGGGTACATTGGCAGTTATGGCATTCCACATTATGACATTCCAAATTCTGTGAACGCCATTCAATTCAAAATACAATATAACCCCCGCTACAATTTTTCATGTCTCTACCTCTTTTTACACTCCCGTACTAACAAAAATACTCTCCTGTAGGCGTCTAATAATTATAGGACCCCCAGAAAAATGAAAAATGTAAAGTTTTTAGGCAACGAAATTGGACGTTTTCTGTTGGAAACTGTTACAATAGTTTTAAAACATTATATTTTGATCGTTTAAACAATAGTTGAACCCTCTCTTCGAGTTTTAGAAAAAATTATTTTCAGAGATTTTCGTCA</canonical_amplicon>
		<polymorphic_amplicon>ACAAAACTGAAAATAATATCGAAGTTAGATTTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCTTCACGAGGAGCGCCTAATAAGTAAAAAGAAACAAATAATGGAAAACGGGAAGAATTATATACAGTAAAATATATGTGTTAAAAATAAGGATTACAGCTAGTAGCGAGAAATAGATGAACGGGGTGAGGACGGGGTGAGGAATCGGGGTACATTGGCAGTTATGGCATTCCACATTATGACATTCCAAATTCTGTGAACGCCATTCAATTCAAAATACAATATAACCCCCGCTACAATTTTTCATGTCTCTACCTCTTTTTACACTCCCGTACTAACAAAAATACTCTCCTGTAGGCGTCTAATAATTATAGGACCCCCAGAAAAATGAAAAATGTAWAGTTTTTAGGCAACGAAATTGGACGTTTTCTGTTGGAAACTGTTACAATAGTTTTAAAACATTATATTTTGATCGTTTAAACAATAGTTGAACCCTCTCTTCGAGTTTTAGAAAAAATTATTTTCAGAGATTTTCGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29533</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>13392</contig_pos>
        <strand></strand>
        <context>TTTTTAGGCA[A/T]CRAAATTGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAATAATTATAGGACCCCCAGAAAAATGAAAAATGTAAAGTTTTTAGGCA</left_flank>
        <right_flank>CGAAATTGGACGTTTTCTGTTGGAAACTGTTACAATAGTTTTAAAACATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAATATGTTACCATAATTTTGGACCACCCTGTACAGTGCGTTCGGTTTTGAGGGTTCTGAACAAAACTGAAAATAATATCGAAGTTAGATTTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCTTCACGAGGAGCGCCTAATAAGTAAAAAGAAACAAATAATGGAAAACGGGAAGAATTATATACAGTAAAATATATGTGTTAAAAATAAGGATTACAGCTAGTAGCGAGAAATAGATGAACGGGGTGAGGACGGGGTGAGGAATCGGGGTACATTGGCAGTTATGGCATTCCACATTATGACATTCCAAATTCTGTGAACGCCATTCAATTCAAAATACAATATAACCCCCGCTACAATTTTTCATGTCTCTACCTCTTTTTACACTCCCGTACTAACAAAAATACTCTCCTGTAGGCGTCTAATAATTATAGGACCCCCAGAAAAATGAAAAATGTAAAGTTTTTAGGCAACGAAATTGGACGTTTTCTGTTGGAAACTGTTACAATAGTTTTAAAACATTATATTTTGATCGTTTAAACAATAGTTGAACCCTCTCTTCGAGTTTTAGAAAAAATTATTTTCAGAGATTTTCGTCATTTTTTGAGTTTTCGAAACAAATAACTTTGGTCCTGGGTAACATTTTGCCCTGAAATTGATAGTAACTCTTTTTACAGTGGTCTGGATTGCCCAGTAATTGTTTTTAGATCATTCTGAGCCGTTGTTTGTAATTTAAGCAAAACTGTAATTTAAGTTATTTTGTATTTTGAATCGAATGGCGTTTACAAATTTTGATATCATTTTTAGTTTTTTCAGAACCCTCGAAATCGAGGGGGTCCTATAATTATTGGACGCACTGTATAAGAATTTCCGTAATTTCAGTTCAATCAGCCTACTTCTCGTGATGTTGTACCATTGCCATATAGTGAAGGGGTCGAGCAATGCAGTTTGCTTGGAGCTGAGATGGCTAGCT</canonical>
            <polymorphic>TGAATATGTTACCATAATTTTGGACCACCCTGTACAGTGCGTTCGGTTTTGAGGGTTCTGAACAAAACTGAAAATAATATCGAAGTTAGATTTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCTTCACGAGGAGCGCCTAATAAGTAAAAAGAAACAAATAATGGAAAACGGGAAGAATTATATACAGTAAAATATATGTGTTAAAAATAAGGATTACAGCTAGTAGCGAGAAATAGATGAACGGGGTGAGGACGGGGTGAGGAATCGGGGTACATTGGCAGTTATGGCATTCCACATTATGACATTCCAAATTCTGTGAACGCCATTCAATTCAAAATACAATATAACCCCCGCTACAATTTTTCATGTCTCTACCTCTTTTTACACTCCCGTACTAACAAAAATACTCTCCTGTAGGCGTCTAATAATTATAGGACCCCCAGAAAAATGAAAAATGTAAAGTTTTTAGGCAWCGAAATTGGACGTTTTCTGTTGGAAACTGTTACAATAGTTTTAAAACATTATATTTTGATCGTTTAAACAATAGTTGAACCCTCTCTTCGAGTTTTAGAAAAAATTATTTTCAGAGATTTTCGTCATTTTTTGAGTTTTCGAAACAAATAACTTTGGTCCTGGGTAACATTTTGCCCTGAAATTGATAGTAACTCTTTTTACAGTGGTCTGGATTGCCCAGTAATTGTTTTTAGATCATTCTGAGCCGTTGTTTGTAATTTAAGCAAAACTGTAATTTAAGTTATTTTGTATTTTGAATCGAATGGCGTTTACAAATTTTGATATCATTTTTAGTTTTTTCAGAACCCTCGAAATCGAGGGGGTCCTATAATTATTGGACGCACTGTATAAGAATTTCCGTAATTTCAGTTCAATCAGCCTACTTCTCGTGATGTTGTACCATTGCCATATAGTGAAGGGGTCGAGCAATGCAGTTTGCTTGGAGCTGAGATGGCTAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAAACTGAAAATAATATCGAAGT</pcr_primer_p1>
		<pcr_primer_p2>TGACGAAAATCTCTGAAAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>565</pcr_amplicon_size>
		<canonical_amplicon>ACAAAACTGAAAATAATATCGAAGTTAGATTTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCTTCACGAGGAGCGCCTAATAAGTAAAAAGAAACAAATAATGGAAAACGGGAAGAATTATATACAGTAAAATATATGTGTTAAAAATAAGGATTACAGCTAGTAGCGAGAAATAGATGAACGGGGTGAGGACGGGGTGAGGAATCGGGGTACATTGGCAGTTATGGCATTCCACATTATGACATTCCAAATTCTGTGAACGCCATTCAATTCAAAATACAATATAACCCCCGCTACAATTTTTCATGTCTCTACCTCTTTTTACACTCCCGTACTAACAAAAATACTCTCCTGTAGGCGTCTAATAATTATAGGACCCCCAGAAAAATGAAAAATGTAAAGTTTTTAGGCAACGAAATTGGACGTTTTCTGTTGGAAACTGTTACAATAGTTTTAAAACATTATATTTTGATCGTTTAAACAATAGTTGAACCCTCTCTTCGAGTTTTAGAAAAAATTATTTTCAGAGATTTTCGTCA</canonical_amplicon>
		<polymorphic_amplicon>ACAAAACTGAAAATAATATCGAAGTTAGATTTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCTTCACGAGGAGCGCCTAATAAGTAAAAAGAAACAAATAATGGAAAACGGGAAGAATTATATACAGTAAAATATATGTGTTAAAAATAAGGATTACAGCTAGTAGCGAGAAATAGATGAACGGGGTGAGGACGGGGTGAGGAATCGGGGTACATTGGCAGTTATGGCATTCCACATTATGACATTCCAAATTCTGTGAACGCCATTCAATTCAAAATACAATATAACCCCCGCTACAATTTTTCATGTCTCTACCTCTTTTTACACTCCCGTACTAACAAAAATACTCTCCTGTAGGCGTCTAATAATTATAGGACCCCCAGAAAAATGAAAAATGTAAAGTTTTTAGGCAWCGAAATTGGACGTTTTCTGTTGGAAACTGTTACAATAGTTTTAAAACATTATATTTTGATCGTTTAAACAATAGTTGAACCCTCTCTTCGAGTTTTAGAAAAAATTATTTTCAGAGATTTTCGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29534</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>13394</contig_pos>
        <strand></strand>
        <context>TTTAGGCAWC[G/A]AAATTGGACR</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATAATTATAGGACCCCCAGAAAAATGAAAAATGTAAAGTTTTTAGGCAAC</left_flank>
        <right_flank>AAATTGGACGTTTTCTGTTGGAAACTGTTACAATAGTTTTAAAACATTAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATGTTACCATAATTTTGGACCACCCTGTACAGTGCGTTCGGTTTTGAGGGTTCTGAACAAAACTGAAAATAATATCGAAGTTAGATTTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCTTCACGAGGAGCGCCTAATAAGTAAAAAGAAACAAATAATGGAAAACGGGAAGAATTATATACAGTAAAATATATGTGTTAAAAATAAGGATTACAGCTAGTAGCGAGAAATAGATGAACGGGGTGAGGACGGGGTGAGGAATCGGGGTACATTGGCAGTTATGGCATTCCACATTATGACATTCCAAATTCTGTGAACGCCATTCAATTCAAAATACAATATAACCCCCGCTACAATTTTTCATGTCTCTACCTCTTTTTACACTCCCGTACTAACAAAAATACTCTCCTGTAGGCGTCTAATAATTATAGGACCCCCAGAAAAATGAAAAATGTAAAGTTTTTAGGCAACGAAATTGGACGTTTTCTGTTGGAAACTGTTACAATAGTTTTAAAACATTATATTTTGATCGTTTAAACAATAGTTGAACCCTCTCTTCGAGTTTTAGAAAAAATTATTTTCAGAGATTTTCGTCATTTTTTGAGTTTTCGAAACAAATAACTTTGGTCCTGGGTAACATTTTGCCCTGAAATTGATAGTAACTCTTTTTACAGTGGTCTGGATTGCCCAGTAATTGTTTTTAGATCATTCTGAGCCGTTGTTTGTAATTTAAGCAAAACTGTAATTTAAGTTATTTTGTATTTTGAATCGAATGGCGTTTACAAATTTTGATATCATTTTTAGTTTTTTCAGAACCCTCGAAATCGAGGGGGTCCTATAATTATTGGACGCACTGTATAAGAATTTCCGTAATTTCAGTTCAATCAGCCTACTTCTCGTGATGTTGTACCATTGCCATATAGTGAAGGGGTCGAGCAATGCAGTTTGCTTGGAGCTGAGATGGCTAGCTTG</canonical>
            <polymorphic>AATATGTTACCATAATTTTGGACCACCCTGTACAGTGCGTTCGGTTTTGAGGGTTCTGAACAAAACTGAAAATAATATCGAAGTTAGATTTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCTTCACGAGGAGCGCCTAATAAGTAAAAAGAAACAAATAATGGAAAACGGGAAGAATTATATACAGTAAAATATATGTGTTAAAAATAAGGATTACAGCTAGTAGCGAGAAATAGATGAACGGGGTGAGGACGGGGTGAGGAATCGGGGTACATTGGCAGTTATGGCATTCCACATTATGACATTCCAAATTCTGTGAACGCCATTCAATTCAAAATACAATATAACCCCCGCTACAATTTTTCATGTCTCTACCTCTTTTTACACTCCCGTACTAACAAAAATACTCTCCTGTAGGCGTCTAATAATTATAGGACCCCCAGAAAAATGAAAAATGTAAAGTTTTTAGGCAACRAAATTGGACGTTTTCTGTTGGAAACTGTTACAATAGTTTTAAAACATTATATTTTGATCGTTTAAACAATAGTTGAACCCTCTCTTCGAGTTTTAGAAAAAATTATTTTCAGAGATTTTCGTCATTTTTTGAGTTTTCGAAACAAATAACTTTGGTCCTGGGTAACATTTTGCCCTGAAATTGATAGTAACTCTTTTTACAGTGGTCTGGATTGCCCAGTAATTGTTTTTAGATCATTCTGAGCCGTTGTTTGTAATTTAAGCAAAACTGTAATTTAAGTTATTTTGTATTTTGAATCGAATGGCGTTTACAAATTTTGATATCATTTTTAGTTTTTTCAGAACCCTCGAAATCGAGGGGGTCCTATAATTATTGGACGCACTGTATAAGAATTTCCGTAATTTCAGTTCAATCAGCCTACTTCTCGTGATGTTGTACCATTGCCATATAGTGAAGGGGTCGAGCAATGCAGTTTGCTTGGAGCTGAGATGGCTAGCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAAACTGAAAATAATATCGAAGT</pcr_primer_p1>
		<pcr_primer_p2>TGACGAAAATCTCTGAAAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>565</pcr_amplicon_size>
		<canonical_amplicon>ACAAAACTGAAAATAATATCGAAGTTAGATTTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCTTCACGAGGAGCGCCTAATAAGTAAAAAGAAACAAATAATGGAAAACGGGAAGAATTATATACAGTAAAATATATGTGTTAAAAATAAGGATTACAGCTAGTAGCGAGAAATAGATGAACGGGGTGAGGACGGGGTGAGGAATCGGGGTACATTGGCAGTTATGGCATTCCACATTATGACATTCCAAATTCTGTGAACGCCATTCAATTCAAAATACAATATAACCCCCGCTACAATTTTTCATGTCTCTACCTCTTTTTACACTCCCGTACTAACAAAAATACTCTCCTGTAGGCGTCTAATAATTATAGGACCCCCAGAAAAATGAAAAATGTAAAGTTTTTAGGCAACGAAATTGGACGTTTTCTGTTGGAAACTGTTACAATAGTTTTAAAACATTATATTTTGATCGTTTAAACAATAGTTGAACCCTCTCTTCGAGTTTTAGAAAAAATTATTTTCAGAGATTTTCGTCA</canonical_amplicon>
		<polymorphic_amplicon>ACAAAACTGAAAATAATATCGAAGTTAGATTTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCTTCACGAGGAGCGCCTAATAAGTAAAAAGAAACAAATAATGGAAAACGGGAAGAATTATATACAGTAAAATATATGTGTTAAAAATAAGGATTACAGCTAGTAGCGAGAAATAGATGAACGGGGTGAGGACGGGGTGAGGAATCGGGGTACATTGGCAGTTATGGCATTCCACATTATGACATTCCAAATTCTGTGAACGCCATTCAATTCAAAATACAATATAACCCCCGCTACAATTTTTCATGTCTCTACCTCTTTTTACACTCCCGTACTAACAAAAATACTCTCCTGTAGGCGTCTAATAATTATAGGACCCCCAGAAAAATGAAAAATGTAAAGTTTTTAGGCAACRAAATTGGACGTTTTCTGTTGGAAACTGTTACAATAGTTTTAAAACATTATATTTTGATCGTTTAAACAATAGTTGAACCCTCTCTTCGAGTTTTAGAAAAAATTATTTTCAGAGATTTTCGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29535</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>13404</contig_pos>
        <strand></strand>
        <context>RAAATTGGAC[G/A]TTTTCTGTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GACCCCCAGAAAAATGAAAAATGTAAAGTTTTTAGGCAACGAAATTGGAC</left_flank>
        <right_flank>TTTTCTGTTGGAAACTGTTACAATAGTTTTAAAACATTATATTTTGATCG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATAATTTTGGACCACCCTGTACAGTGCGTTCGGTTTTGAGGGTTCTGAACAAAACTGAAAATAATATCGAAGTTAGATTTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCTTCACGAGGAGCGCCTAATAAGTAAAAAGAAACAAATAATGGAAAACGGGAAGAATTATATACAGTAAAATATATGTGTTAAAAATAAGGATTACAGCTAGTAGCGAGAAATAGATGAACGGGGTGAGGACGGGGTGAGGAATCGGGGTACATTGGCAGTTATGGCATTCCACATTATGACATTCCAAATTCTGTGAACGCCATTCAATTCAAAATACAATATAACCCCCGCTACAATTTTTCATGTCTCTACCTCTTTTTACACTCCCGTACTAACAAAAATACTCTCCTGTAGGCGTCTAATAATTATAGGACCCCCAGAAAAATGAAAAATGTAAAGTTTTTAGGCAACGAAATTGGACGTTTTCTGTTGGAAACTGTTACAATAGTTTTAAAACATTATATTTTGATCGTTTAAACAATAGTTGAACCCTCTCTTCGAGTTTTAGAAAAAATTATTTTCAGAGATTTTCGTCATTTTTTGAGTTTTCGAAACAAATAACTTTGGTCCTGGGTAACATTTTGCCCTGAAATTGATAGTAACTCTTTTTACAGTGGTCTGGATTGCCCAGTAATTGTTTTTAGATCATTCTGAGCCGTTGTTTGTAATTTAAGCAAAACTGTAATTTAAGTTATTTTGTATTTTGAATCGAATGGCGTTTACAAATTTTGATATCATTTTTAGTTTTTTCAGAACCCTCGAAATCGAGGGGGTCCTATAATTATTGGACGCACTGTATAAGAATTTCCGTAATTTCAGTTCAATCAGCCTACTTCTCGTGATGTTGTACCATTGCCATATAGTGAAGGGGTCGAGCAATGCAGTTTGCTTGGAGCTGAGATGGCTAGCTTGGAAACTGAAG</canonical>
            <polymorphic>CATAATTTTGGACCACCCTGTACAGTGCGTTCGGTTTTGAGGGTTCTGAACAAAACTGAAAATAATATCGAAGTTAGATTTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCTTCACGAGGAGCGCCTAATAAGTAAAAAGAAACAAATAATGGAAAACGGGAAGAATTATATACAGTAAAATATATGTGTTAAAAATAAGGATTACAGCTAGTAGCGAGAAATAGATGAACGGGGTGAGGACGGGGTGAGGAATCGGGGTACATTGGCAGTTATGGCATTCCACATTATGACATTCCAAATTCTGTGAACGCCATTCAATTCAAAATACAATATAACCCCCGCTACAATTTTTCATGTCTCTACCTCTTTTTACACTCCCGTACTAACAAAAATACTCTCCTGTAGGCGTCTAATAATTATAGGACCCCCAGAAAAATGAAAAATGTAAAGTTTTTAGGCAACGAAATTGGACRTTTTCTGTTGGAAACTGTTACAATAGTTTTAAAACATTATATTTTGATCGTTTAAACAATAGTTGAACCCTCTCTTCGAGTTTTAGAAAAAATTATTTTCAGAGATTTTCGTCATTTTTTGAGTTTTCGAAACAAATAACTTTGGTCCTGGGTAACATTTTGCCCTGAAATTGATAGTAACTCTTTTTACAGTGGTCTGGATTGCCCAGTAATTGTTTTTAGATCATTCTGAGCCGTTGTTTGTAATTTAAGCAAAACTGTAATTTAAGTTATTTTGTATTTTGAATCGAATGGCGTTTACAAATTTTGATATCATTTTTAGTTTTTTCAGAACCCTCGAAATCGAGGGGGTCCTATAATTATTGGACGCACTGTATAAGAATTTCCGTAATTTCAGTTCAATCAGCCTACTTCTCGTGATGTTGTACCATTGCCATATAGTGAAGGGGTCGAGCAATGCAGTTTGCTTGGAGCTGAGATGGCTAGCTTGGAAACTGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAAACTGAAAATAATATCGAAGT</pcr_primer_p1>
		<pcr_primer_p2>TGACGAAAATCTCTGAAAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>565</pcr_amplicon_size>
		<canonical_amplicon>ACAAAACTGAAAATAATATCGAAGTTAGATTTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCTTCACGAGGAGCGCCTAATAAGTAAAAAGAAACAAATAATGGAAAACGGGAAGAATTATATACAGTAAAATATATGTGTTAAAAATAAGGATTACAGCTAGTAGCGAGAAATAGATGAACGGGGTGAGGACGGGGTGAGGAATCGGGGTACATTGGCAGTTATGGCATTCCACATTATGACATTCCAAATTCTGTGAACGCCATTCAATTCAAAATACAATATAACCCCCGCTACAATTTTTCATGTCTCTACCTCTTTTTACACTCCCGTACTAACAAAAATACTCTCCTGTAGGCGTCTAATAATTATAGGACCCCCAGAAAAATGAAAAATGTAAAGTTTTTAGGCAACGAAATTGGACGTTTTCTGTTGGAAACTGTTACAATAGTTTTAAAACATTATATTTTGATCGTTTAAACAATAGTTGAACCCTCTCTTCGAGTTTTAGAAAAAATTATTTTCAGAGATTTTCGTCA</canonical_amplicon>
		<polymorphic_amplicon>ACAAAACTGAAAATAATATCGAAGTTAGATTTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCTTCACGAGGAGCGCCTAATAAGTAAAAAGAAACAAATAATGGAAAACGGGAAGAATTATATACAGTAAAATATATGTGTTAAAAATAAGGATTACAGCTAGTAGCGAGAAATAGATGAACGGGGTGAGGACGGGGTGAGGAATCGGGGTACATTGGCAGTTATGGCATTCCACATTATGACATTCCAAATTCTGTGAACGCCATTCAATTCAAAATACAATATAACCCCCGCTACAATTTTTCATGTCTCTACCTCTTTTTACACTCCCGTACTAACAAAAATACTCTCCTGTAGGCGTCTAATAATTATAGGACCCCCAGAAAAATGAAAAATGTAAAGTTTTTAGGCAACGAAATTGGACRTTTTCTGTTGGAAACTGTTACAATAGTTTTAAAACATTATATTTTGATCGTTTAAACAATAGTTGAACCCTCTCTTCGAGTTTTAGAAAAAATTATTTTCAGAGATTTTCGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29536</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>13475</contig_pos>
        <strand></strand>
        <context>AGTTGAACCC[T/A]CTCTTCGAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CAATAGTTTTAAAACATTATATTTTGATCGTTTAAACAATAGTTGAACCC</left_flank>
        <right_flank>CTCTTCGAGTTTTAGAAAAAATTATTTTCAGAGATTTTCGTCATTTTTTG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTAGATTTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCTTCACGAGGAGCGCCTAATAAGTAAAAAGAAACAAATAATGGAAAACGGGAAGAATTATATACAGTAAAATATATGTGTTAAAAATAAGGATTACAGCTAGTAGCGAGAAATAGATGAACGGGGTGAGGACGGGGTGAGGAATCGGGGTACATTGGCAGTTATGGCATTCCACATTATGACATTCCAAATTCTGTGAACGCCATTCAATTCAAAATACAATATAACCCCCGCTACAATTTTTCATGTCTCTACCTCTTTTTACACTCCCGTACTAACAAAAATACTCTCCTGTAGGCGTCTAATAATTATAGGACCCCCAGAAAAATGAAAAATGTAAAGTTTTTAGGCAACGAAATTGGACGTTTTCTGTTGGAAACTGTTACAATAGTTTTAAAACATTATATTTTGATCGTTTAAACAATAGTTGAACCCTCTCTTCGAGTTTTAGAAAAAATTATTTTCAGAGATTTTCGTCATTTTTTGAGTTTTCGAAACAAATAACTTTGGTCCTGGGTAACATTTTGCCCTGAAATTGATAGTAACTCTTTTTACAGTGGTCTGGATTGCCCAGTAATTGTTTTTAGATCATTCTGAGCCGTTGTTTGTAATTTAAGCAAAACTGTAATTTAAGTTATTTTGTATTTTGAATCGAATGGCGTTTACAAATTTTGATATCATTTTTAGTTTTTTCAGAACCCTCGAAATCGAGGGGGTCCTATAATTATTGGACGCACTGTATAAGAATTTCCGTAATTTCAGTTCAATCAGCCTACTTCTCGTGATGTTGTACCATTGCCATATAGTGAAGGGGTCGAGCAATGCAGTTTGCTTGGAGCTGAGATGGCTAGCTTGGAAACTGAAGCAGAATCTATACTTTGGGCAAACTGTAAGTTTTTGAATGAATTTTACCAAACACCATTGGCTAAAAGCATA</canonical>
            <polymorphic>AGTTAGATTTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCTTCACGAGGAGCGCCTAATAAGTAAAAAGAAACAAATAATGGAAAACGGGAAGAATTATATACAGTAAAATATATGTGTTAAAAATAAGGATTACAGCTAGTAGCGAGAAATAGATGAACGGGGTGAGGACGGGGTGAGGAATCGGGGTACATTGGCAGTTATGGCATTCCACATTATGACATTCCAAATTCTGTGAACGCCATTCAATTCAAAATACAATATAACCCCCGCTACAATTTTTCATGTCTCTACCTCTTTTTACACTCCCGTACTAACAAAAATACTCTCCTGTAGGCGTCTAATAATTATAGGACCCCCAGAAAAATGAAAAATGTAAAGTTTTTAGGCAACGAAATTGGACGTTTTCTGTTGGAAACTGTTACAATAGTTTTAAAACATTATATTTTGATCGTTTAAACAATAGTTGAACCCWCTCTTCGAGTTTTAGAAAAAATTATTTTCAGAGATTTTCGTCATTTTTTGAGTTTTCGAAACAAATAACTTTGGTCCTGGGTAACATTTTGCCCTGAAATTGATAGTAACTCTTTTTACAGTGGTCTGGATTGCCCAGTAATTGTTTTTAGATCATTCTGAGCCGTTGTTTGTAATTTAAGCAAAACTGTAATTTAAGTTATTTTGTATTTTGAATCGAATGGCGTTTACAAATTTTGATATCATTTTTAGTTTTTTCAGAACCCTCGAAATCGAGGGGGTCCTATAATTATTGGACGCACTGTATAAGAATTTCCGTAATTTCAGTTCAATCAGCCTACTTCTCGTGATGTTGTACCATTGCCATATAGTGAAGGGGTCGAGCAATGCAGTTTGCTTGGAGCTGAGATGGCTAGCTTGGAAACTGAAGCAGAATCTATACTTTGGGCAAACTGTAAGTTTTTGAATGAATTTTACCAAACACCATTGGCTAAAAGCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAAACTGAAAATAATATCGAAGT</pcr_primer_p1>
		<pcr_primer_p2>TACCCAGGACCAAAGTTATTT</pcr_primer_p2>
		<pcr_amplicon_size>605</pcr_amplicon_size>
		<canonical_amplicon>CTCTCTTCGAGTTTTAGAAAAAATTATTTTCAGAGATTTTCGTCATTTTTTGAGTTTTCGAAACAAATAACTTTGGTCCTGGGTA</canonical_amplicon>
		<polymorphic_amplicon>CWCTCTTCGAGTTTTAGAAAAAATTATTTTCAGAGATTTTCGTCATTTTTTGAGTTTTCGAAACAAATAACTTTGGTCCTGGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29537</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>13534</contig_pos>
        <strand></strand>
        <context>TGAGTTTTCG[A/G]AACAAATAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTTAGAAAAAATTATTTTCAGAGATTTTCGTCATTTTTTGAGTTTTCG</left_flank>
        <right_flank>AACAAATAACTTTGGTCCTGGGTAACATTTTGCCCTGAAATTGATAGTAA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCCCCCTTCACGAGGAGCGCCTAATAAGTAAAAAGAAACAAATAATGGAAAACGGGAAGAATTATATACAGTAAAATATATGTGTTAAAAATAAGGATTACAGCTAGTAGCGAGAAATAGATGAACGGGGTGAGGACGGGGTGAGGAATCGGGGTACATTGGCAGTTATGGCATTCCACATTATGACATTCCAAATTCTGTGAACGCCATTCAATTCAAAATACAATATAACCCCCGCTACAATTTTTCATGTCTCTACCTCTTTTTACACTCCCGTACTAACAAAAATACTCTCCTGTAGGCGTCTAATAATTATAGGACCCCCAGAAAAATGAAAAATGTAAAGTTTTTAGGCAACGAAATTGGACGTTTTCTGTTGGAAACTGTTACAATAGTTTTAAAACATTATATTTTGATCGTTTAAACAATAGTTGAACCCTCTCTTCGAGTTTTAGAAAAAATTATTTTCAGAGATTTTCGTCATTTTTTGAGTTTTCGAAACAAATAACTTTGGTCCTGGGTAACATTTTGCCCTGAAATTGATAGTAACTCTTTTTACAGTGGTCTGGATTGCCCAGTAATTGTTTTTAGATCATTCTGAGCCGTTGTTTGTAATTTAAGCAAAACTGTAATTTAAGTTATTTTGTATTTTGAATCGAATGGCGTTTACAAATTTTGATATCATTTTTAGTTTTTTCAGAACCCTCGAAATCGAGGGGGTCCTATAATTATTGGACGCACTGTATAAGAATTTCCGTAATTTCAGTTCAATCAGCCTACTTCTCGTGATGTTGTACCATTGCCATATAGTGAAGGGGTCGAGCAATGCAGTTTGCTTGGAGCTGAGATGGCTAGCTTGGAAACTGAAGCAGAATCTATACTTTGGGCAAACTGTAAGTTTTTGAATGAATTTTACCAAACACCATTGGCTAAAAGCATATTTGCAAGGGCCGGGTTTTTTTCAGGATTTTTATGACCTGGCCCACCCGATTAGCTAAT</canonical>
            <polymorphic>AGCCCCCTTCACGAGGAGCGCCTAATAAGTAAAAAGAAACAAATAATGGAAAACGGGAAGAATTATATACAGTAAAATATATGTGTTAAAAATAAGGATTACAGCTAGTAGCGAGAAATAGATGAACGGGGTGAGGACGGGGTGAGGAATCGGGGTACATTGGCAGTTATGGCATTCCACATTATGACATTCCAAATTCTGTGAACGCCATTCAATTCAAAATACAATATAACCCCCGCTACAATTTTTCATGTCTCTACCTCTTTTTACACTCCCGTACTAACAAAAATACTCTCCTGTAGGCGTCTAATAATTATAGGACCCCCAGAAAAATGAAAAATGTAAAGTTTTTAGGCAACGAAATTGGACGTTTTCTGTTGGAAACTGTTACAATAGTTTTAAAACATTATATTTTGATCGTTTAAACAATAGTTGAACCCTCTCTTCGAGTTTTAGAAAAAATTATTTTCAGAGATTTTCGTCATTTTTTGAGTTTTCGRAACAAATAACTTTGGTCCTGGGTAACATTTTGCCCTGAAATTGATAGTAACTCTTTTTACAGTGGTCTGGATTGCCCAGTAATTGTTTTTAGATCATTCTGAGCCGTTGTTTGTAATTTAAGCAAAACTGTAATTTAAGTTATTTTGTATTTTGAATCGAATGGCGTTTACAAATTTTGATATCATTTTTAGTTTTTTCAGAACCCTCGAAATCGAGGGGGTCCTATAATTATTGGACGCACTGTATAAGAATTTCCGTAATTTCAGTTCAATCAGCCTACTTCTCGTGATGTTGTACCATTGCCATATAGTGAAGGGGTCGAGCAATGCAGTTTGCTTGGAGCTGAGATGGCTAGCTTGGAAACTGAAGCAGAATCTATACTTTGGGCAAACTGTAAGTTTTTGAATGAATTTTACCAAACACCATTGGCTAAAAGCATATTTGCAAGGGCCGGGTTTTTTTCAGGATTTTTATGACCTGGCCCACCCGATTAGCTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>447 179 160 107 51 50 6</canonical_bands>
                <polymorphic_bands>447 211 179 107 50 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAAACTGAAAATAATATCGAAGT</pcr_primer_p1>
		<pcr_primer_p2>CCAGACCACTGTAAAAAGAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>651</pcr_amplicon_size>
		<canonical_amplicon>GAAACAAATAACTTTGGTCCTGGGTAACATTTTGCCCTGAAATTGATAGTAACTCTTTTTACAGTGGTCTGG</canonical_amplicon>
		<polymorphic_amplicon>GRAACAAATAACTTTGGTCCTGGGTAACATTTTGCCCTGAAATTGATAGTAACTCTTTTTACAGTGGTCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29538</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>15488</contig_pos>
        <strand></strand>
        <context>TCCAATAACT[G/T]CTGGAACCGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTGAATAAAATTGTTGTTTTCCATCTTTCCTCTTACCAAATCCAATAACT</left_flank>
        <right_flank>CTGGAACCGGTTTTCACTGTGACTGACCCTCCAAAAAAAGGTACGGACCC</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGAAAGTATAGATAGTAGGGACTTACCGATTGTATAGCCAAGGCAGTAGCTGTGCGACATATAACGCTGCTACTAGTTCAACCAGTCCAGAATTCACTTTTAATATGAAAACTCTCGAACCCCATCACGCCCTCCCCAACAATCATTTCAGTAGTACGGCGTCTTTCTCTTGCGTCTTACCCCATCTCTGGTTTTTGGGTCAAATCTGATTACAATGCTACAAGCGAAAGATGGTACTGGAGCGATGGTCAAGCTGATCCGAACATTGATCCACAGCCAACAGTAAGAGACCCAAACGGAAAAATTGCCGCGTTCGTAGGCTCAGACCCAGACACGCCTGCCACACTGGAAGTTGTTTCCCAAAGAGGCACGGGTCCCGGAGTCGTTAATACGGTCTTATGTGGCGTGCCTGGATTGCAGTTTTCCTAGTTATTCTGTTTTTAATTGCTGAATAAAATTGTTGTTTTCCATCTTTCCTCTTACCAAATCCAATAACTGCTGGAACCGGTTTTCACTGTGACTGACCCTCCAAAAAAAGGTACGGACCCCCCCCCCCCCTCATCATCCTGTCAGCTTTTAGCTTTTAAAACCACTCCAAACTCAAACATTTTCCGAGTCCCAAAAATTTGATAAACAGTTGCTTTTATTAAACTTCAATCATTCATAGAATATGAAAACAAACAATTTTCAAAGTGGTTGATTATAAACAACGGACATGCAACCAGCTACTTGCAAGTCAAATGGCACTCCCTTATTTGTGTATTGACCGTCACGGTTGCAATCCAAAAGGATCCTCAAGTCGTCGCCCGCATAATGAGTAGAATTGTATATCTTAAAAAAAAGTCCACATTCGGATACTGAAATCAGTTCTACCTGGTCGTCCGCATTGATTAGAAAAGCTTTAGCTTGGACGAAGGTTGTTTCTACATTGACATAGATGAGACAAGAAATATATACTGAACAACCATCTGGTTGGAAATTACTTCTCATCCTTACTG</canonical>
            <polymorphic>ATTGAAAGTATAGATAGTAGGGACTTACCGATTGTATAGCCAAGGCAGTAGCTGTGCGACATATAACGCTGCTACTAGTTCAACCAGTCCAGAATTCACTTTTAATATGAAAACTCTCGAACCCCATCACGCCCTCCCCAACAATCATTTCAGTAGTACGGCGTCTTTCTCTTGCGTCTTACCCCATCTCTGGTTTTTGGGTCAAATCTGATTACAATGCTACAAGCGAAAGATGGTACTGGAGCGATGGTCAAGCTGATCCGAACATTGATCCACAGCCAACAGTAAGAGACCCAAACGGAAAAATTGCCGCGTTCGTAGGCTCAGACCCAGACACGCCTGCCACACTGGAAGTTGTTTCCCAAAGAGGCACGGGTCCCGGAGTCGTTAATACGGTCTTATGTGGCGTGCCTGGATTGCAGTTTTCCTAGTTATTCTGTTTTTAATTGCTGAATAAAATTGTTGTTTTCCATCTTTCCTCTTACCAAATCCAATAACTKCTGGAACCGGTTTTCACTGTGACTGACCCTCCAAAAAAAGGTACGGACCCCCCCCCCCCCTCATCATCCTGTCAGCTTTTAGCTTTTAAAACCACTCCAAACTCAAACATTTTCCGAGTCCCAAAAATTTGATAAACAGTTGCTTTTATTAAACTTCAATCATTCATAGAATATGAAAACAAACAATTTTCAAAGTGGTTGATTATAAACAACGGACATGCAACCAGCTACTTGCAAGTCAAATGGCACTCCCTTATTTGTGTATTGACCGTCACGGTTGCAATCCAAAAGGATCCTCAAGTCGTCGCCCGCATAATGAGTAGAATTGTATATCTTAAAAAAAAGTCCACATTCGGATACTGAAATCAGTTCTACCTGGTCGTCCGCATTGATTAGAAAAGCTTTAGCTTGGACGAAGGTTGTTTCTACATTGACATAGATGAGACAAGAAATATATACTGAACAACCATCTGGTTGGAAATTACTTCTCATCCTTACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGCTGAATAAAATTGTTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTTGAAAATTGTTTGTTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGCTGAATAAAATTGTTGTTTTCCATCTTTCCTCTTACCAAATCCAATAACTGCTGGAACCGGTTTTCACTGTGACTGACCCTCCAAAAAAAGGTACGGACCCCCCCCCCCCCTCATCATCCTGTCAGCTTTTAGCTTTTAAAACCACTCCAAACTCAAACATTTTCCGAGTCCCAAAAATTTGATAAACAGTTGCTTTTATTAAACTTCAATCATTCATAGAATATGAAAACAAACAATTTTCAAAG</canonical_amplicon>
		<polymorphic_amplicon>TTGCTGAATAAAATTGTTGTTTTCCATCTTTCCTCTTACCAAATCCAATAACTKCTGGAACCGGTTTTCACTGTGACTGACCCTCCAAAAAAAGGTACGGACCCCCCCCCCCCCTCATCATCCTGTCAGCTTTTAGCTTTTAAAACCACTCCAAACTCAAACATTTTCCGAGTCCCAAAAATTTGATAAACAGTTGCTTTTATTAAACTTCAATCATTCATAGAATATGAAAACAAACAATTTTCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29539</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>41818</contig_pos>
        <strand></strand>
        <context>TTTTAAAAAA[A/T]TTCACCTTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACCCTGATTAAAGTATGTTTTCATTCAAAAAAGAATTAATTTTAAAAAA</left_flank>
        <right_flank>TTCACCTTAAATCGACCCCGTAAATCGACACCGATTGCGGGTCTCGCCGC</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATTTTCTGCGTTCTGTAATTTCCTATTATCTGTGAGAATATTTTTCGCCGACGAGAATAACCTTTCTGCTTCGGCCGTTGTTGCAGGAGCAGAAAAAAAACGAAGGTGAAGCCGGTAAAGTGTTGGAAAGACTTCTTGACTGGTTGCTTTTGTCCAAAACTTGATAGGATTCTCATCCATGTCGGTTCGCTCACTAAACCATTTTGTGTGTTCCTGAAGAAAACCACATTTGGCTTTGAACAAATTCTTCGATCTTACTGCAACGACTAGCTCGCTTAGCTTTCCTTTTCTTTCGGTTGTAGGTGTGGCTGGGTATCGAGACTGGGTATAGAGTCTGAAAAAAACCAAGTGTTTTCAGTGAGAGAAGGTAAAAAATCACTGAAAAATAAAAGAAGTCTATTAAGAACAGTATAAACCGAAAAAAAAATGTTGAAAAAGTAATGAAAACCCTGATTAAAGTATGTTTTCATTCAAAAAAGAATTAATTTTAAAAAAATTCACCTTAAATCGACCCCGTAAATCGACACCGATTGCGGGTCTCGCCGCGCTTGGGTTACTGTTGCACCCGTTTCAACTATACAAAGTAGAGATTTCCTCTTCACTTTGAACGCAGCATGATTATTTCGAGAAAAAATTTTCCGAAAAAAATCGGAAAAATCGAGAACTCGATTTTCCGATTCCGACCAAGCCTGGTACCTGACATCCTAGATTTTCAGTCTTCTTTTGGTTTTCTAGGCCACCATAATCATATATAATTAACTTCTTTTGCCTGGTTCCTTTTCTTGGTCGGTTTCCGATTTCAAAAAATTTTCAGAATGACTGAAAATATTGTTTCATTTCCTATTATCATTTCCTTTATGGCTTTATCAATTATCGGTTTGATTGGAAATCTAACTATTCTTTTGGTGACATTTAAAATTAAAACTTTGCAAACGAGATGTTGTATTCTGATTGGGATAATGGCCTTTTTCAATTTTGTAGTTTGTGTCTATGTGG</canonical>
            <polymorphic>AAAAATTTTCTGCGTTCTGTAATTTCCTATTATCTGTGAGAATATTTTTCGCCGACGAGAATAACCTTTCTGCTTCGGCCGTTGTTGCAGGAGCAGAAAAAAAACGAAGGTGAAGCCGGTAAAGTGTTGGAAAGACTTCTTGACTGGTTGCTTTTGTCCAAAACTTGATAGGATTCTCATCCATGTCGGTTCGCTCACTAAACCATTTTGTGTGTTCCTGAAGAAAACCACATTTGGCTTTGAACAAATTCTTCGATCTTACTGCAACGACTAGCTCGCTTAGCTTTCCTTTTCTTTCGGTTGTAGGTGTGGCTGGGTATCGAGACTGGGTATAGAGTCTGAAAAAAACCAAGTGTTTTCAGTGAGAGAAGGTAAAAAATCACTGAAAAATAAAAGAAGTCTATTAAGAACAGTATAAACCGAAAAAAAAATGTTGAAAAAGTAATGAAAACCCTGATTAAAGTATGTTTTCATTCAAAAAAGAATTAATTTTAAAAAAWTTCACCTTAAATCGACCCCGTAAATCGACACCGATTGCGGGTCTCGCCGCGCTTGGGTTACTGTTGCACCCGTTTCAACTATACAAAGTAGAGATTTCCTCTTCACTTTGAACGCAGCATGATTATTTCGAGAAAAAATTTTCCGAAAAAAATCGGAAAAATCGAGAACTCGATTTTCCGATTCCGACCAAGCCTGGTACCTGACATCCTAGATTTTCAGTCTTCTTTTGGTTTTCTAGGCCACCATAATCATATATAATTAACTTCTTTTGCCTGGTTCCTTTTCTTGGTCGGTTTCCGATTTCAAAAAATTTTCAGAATGACTGAAAATATTGTTTCATTTCCTATTATCATTTCCTTTATGGCTTTATCAATTATCGGTTTGATTGGAAATCTAACTATTCTTTTGGTGACATTTAAAATTAAAACTTTGCAAACGAGATGTTGTATTCTGATTGGGATAATGGCCTTTTTCAATTTTGTAGTTTGTGTCTATGTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>252 243 191 173 138 3</canonical_bands>
                <polymorphic_bands>390 243 191 173 3</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>237 226 138 121 63 55 52 48 25 17 11 4 3</canonical_bands>
                <polymorphic_bands>237 226 149 121 63 55 52 48 25 17 4 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAGTGAGAGAAGGTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGTGAAGAGGAAATCTCTACTTTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAGTGAGAGAAGGTAAAAAATCACTGAAAAATAAAAGAAGTCTATTAAGAACAGTATAAACCGAAAAAAAAATGTTGAAAAAGTAATGAAAACCCTGATTAAAGTATGTTTTCATTCAAAAAAGAATTAATTTTAAAAAAATTCACCTTAAATCGACCCCGTAAATCGACACCGATTGCGGGTCTCGCCGCGCTTGGGTTACTGTTGCACCCGTTTCAACTATACAAAGTAGAGATTTCCTCTTCACT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAGTGAGAGAAGGTAAAAAATCACTGAAAAATAAAAGAAGTCTATTAAGAACAGTATAAACCGAAAAAAAAATGTTGAAAAAGTAATGAAAACCCTGATTAAAGTATGTTTTCATTCAAAAAAGAATTAATTTTAAAAAAWTTCACCTTAAATCGACCCCGTAAATCGACACCGATTGCGGGTCTCGCCGCGCTTGGGTTACTGTTGCACCCGTTTCAACTATACAAAGTAGAGATTTCCTCTTCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29540</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>42156</contig_pos>
        <strand>+</strand>
        <context>AAATATTGTT[C/T]CATTTCCTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGTCGGTTTCCGATTTCAAAAAATTTTCAGAATGACTGAAAATATTGTT</left_flank>
        <right_flank>CATTTCCTATTATCATTTCCTTTATGGCTTTATCAATTATCGGTTTGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAAAAAAACCAAGTGTTTTCAGTGAGAGAAGGTAAAAAATCACTGAAAAATAAAAGAAGTCTATTAAGAACAGTATAAACCGAAAAAAAAATGTTGAAAAAGTAATGAAAACCCTGATTAAAGTATGTTTTCATTCAAAAAAGAATTAATTTTAAAAAAATTCACCTTAAATCGACCCCGTAAATCGACACCGATTGCGGGTCTCGCCGCGCTTGGGTTACTGTTGCACCCGTTTCAACTATACAAAGTAGAGATTTCCTCTTCACTTTGAACGCAGCATGATTATTTCGAGAAAAAATTTTCCGAAAAAAATCGGAAAAATCGAGAACTCGATTTTCCGATTCCGACCAAGCCTGGTACCTGACATCCTAGATTTTCAGTCTTCTTTTGGTTTTCTAGGCCACCATAATCATATATAATTAACTTCTTTTGCCTGGTTCCTTTTCTTGGTCGGTTTCCGATTTCAAAAAATTTTCAGAATGACTGAAAATATTGTTTCATTTCCTATTATCATTTCCTTTATGGCTTTATCAATTATCGGTTTGATTGGAAATCTAACTATTCTTTTGGTGACATTTAAAATTAAAACTTTGCAAACGAGATGTTGTATTCTGATTGGGATAATGGCCTTTTTCAATTTTGTAGTTTGTGTCTATGTGGTACGTTTCCTAGGAGAAGCGAAGTTAGCTTCCATCTCCGTTGGTCTAAAATCGTCGACCGCCGACCGACAGCTGGCTGGGTCGGTGGTCGGTCGGTCGGATAAGTTTCCCGACCGAATGGAAGCTTTAGAGCCAATCCGAACTTCGTAATCTATTTCAGACTCAATTAAGAATAATGATGTTGCTTGGATTCTACGATATCTTCAATACCACTTGTTTTCTATTCTCCTTCTATGGAATTTTCGCAATGAATATGCAGAGTATTTTGAGTTTATTTATAGGATTGGACAGGTTGTATAAAGTGTCTTTTCCAGTCAAGTAAGCATTTTTGAGCTTAAA</canonical>
            <polymorphic>CTGAAAAAAACCAAGTGTTTTCAGTGAGAGAAGGTAAAAAATCACTGAAAAATAAAAGAAGTCTATTAAGAACAGTATAAACCGAAAAAAAAATGTTGAAAAAGTAATGAAAACCCTGATTAAAGTATGTTTTCATTCAAAAAAGAATTAATTTTAAAAAAATTCACCTTAAATCGACCCCGTAAATCGACACCGATTGCGGGTCTCGCCGCGCTTGGGTTACTGTTGCACCCGTTTCAACTATACAAAGTAGAGATTTCCTCTTCACTTTGAACGCAGCATGATTATTTCGAGAAAAAATTTTCCGAAAAAAATCGGAAAAATCGAGAACTCGATTTTCCGATTCCGACCAAGCCTGGTACCTGACATCCTAGATTTTCAGTCTTCTTTTGGTTTTCTAGGCCACCATAATCATATATAATTAACTTCTTTTGCCTGGTTCCTTTTCTTGGTCGGTTTCCGATTTCAAAAAATTTTCAGAATGACTGAAAATATTGTTYCATTTCCTATTATCATTTCCTTTATGGCTTTATCAATTATCGGTTTGATTGGAAATCTAACTATTCTTTTGGTGACATTTAAAATTAAAACTTTGCAAACGAGATGTTGTATTCTGATTGGGATAATGGCCTTTTTCAATTTTGTAGTTTGTGTCTATGTGGTACGTTTCCTAGGAGAAGCGAAGTTAGCTTCCATCTCCGTTGGTCTAAAATCGTCGACCGCCGACCGACAGCTGGCTGGGTCGGTGGTCGGTCGGTCGGATAAGTTTCCCGACCGAATGGAAGCTTTAGAGCCAATCCGAACTTCGTAATCTATTTCAGACTCAATTAAGAATAATGATGTTGCTTGGATTCTACGATATCTTCAATACCACTTGTTTTCTATTCTCCTTCTATGGAATTTTCGCAATGAATATGCAGAGTATTTTGAGTTTATTTATAGGATTGGACAGGTTGTATAAAGTGTCTTTTCCAGTCAAGTAAGCATTTTTGAGCTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAGTCTTCTTTTGGTTTTCTA</pcr_primer_p1>
		<pcr_primer_p2>TTATCCCAATCAGAATACAACAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCAGTCTTCTTTTGGTTTTCTAGGCCACCATAATCATATATAATTAACTTCTTTTGCCTGGTTCCTTTTCTTGGTCGGTTTCCGATTTCAAAAAATTTTCAGAATGACTGAAAATATTGTTTCATTTCCTATTATCATTTCCTTTATGGCTTTATCAATTATCGGTTTGATTGGAAATCTAACTATTCTTTTGGTGACATTTAAAATTAAAACTTTGCAAACGAGATGTTGTATTCTGATTGGGATAA</canonical_amplicon>
		<polymorphic_amplicon>TTCAGTCTTCTTTTGGTTTTCTAGGCCACCATAATCATATATAATTAACTTCTTTTGCCTGGTTCCTTTTCTTGGTCGGTTTCCGATTTCAAAAAATTTTCAGAATGACTGAAAATATTGTTYCATTTCCTATTATCATTTCCTTTATGGCTTTATCAATTATCGGTTTGATTGGAAATCTAACTATTCTTTTGGTGACATTTAAAATTAAAACTTTGCAAACGAGATGTTGTATTCTGATTGGGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29541</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>42174</contig_pos>
        <strand>+</strand>
        <context>TATTATCATT[C/T]CCTTTATGGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAATTTTCAGAATGACTGAAAATATTGTTTCATTTCCTATTATCATT</left_flank>
        <right_flank>CCTTTATGGCTTTATCAATTATCGGTTTGATTGGAAATCTAACTATTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAGTGAGAGAAGGTAAAAAATCACTGAAAAATAAAAGAAGTCTATTAAGAACAGTATAAACCGAAAAAAAAATGTTGAAAAAGTAATGAAAACCCTGATTAAAGTATGTTTTCATTCAAAAAAGAATTAATTTTAAAAAAATTCACCTTAAATCGACCCCGTAAATCGACACCGATTGCGGGTCTCGCCGCGCTTGGGTTACTGTTGCACCCGTTTCAACTATACAAAGTAGAGATTTCCTCTTCACTTTGAACGCAGCATGATTATTTCGAGAAAAAATTTTCCGAAAAAAATCGGAAAAATCGAGAACTCGATTTTCCGATTCCGACCAAGCCTGGTACCTGACATCCTAGATTTTCAGTCTTCTTTTGGTTTTCTAGGCCACCATAATCATATATAATTAACTTCTTTTGCCTGGTTCCTTTTCTTGGTCGGTTTCCGATTTCAAAAAATTTTCAGAATGACTGAAAATATTGTTTCATTTCCTATTATCATTTCCTTTATGGCTTTATCAATTATCGGTTTGATTGGAAATCTAACTATTCTTTTGGTGACATTTAAAATTAAAACTTTGCAAACGAGATGTTGTATTCTGATTGGGATAATGGCCTTTTTCAATTTTGTAGTTTGTGTCTATGTGGTACGTTTCCTAGGAGAAGCGAAGTTAGCTTCCATCTCCGTTGGTCTAAAATCGTCGACCGCCGACCGACAGCTGGCTGGGTCGGTGGTCGGTCGGTCGGATAAGTTTCCCGACCGAATGGAAGCTTTAGAGCCAATCCGAACTTCGTAATCTATTTCAGACTCAATTAAGAATAATGATGTTGCTTGGATTCTACGATATCTTCAATACCACTTGTTTTCTATTCTCCTTCTATGGAATTTTCGCAATGAATATGCAGAGTATTTTGAGTTTATTTATAGGATTGGACAGGTTGTATAAAGTGTCTTTTCCAGTCAAGTAAGCATTTTTGAGCTTAAATTGCTAATGAAAACTTCA</canonical>
            <polymorphic>TTTCAGTGAGAGAAGGTAAAAAATCACTGAAAAATAAAAGAAGTCTATTAAGAACAGTATAAACCGAAAAAAAAATGTTGAAAAAGTAATGAAAACCCTGATTAAAGTATGTTTTCATTCAAAAAAGAATTAATTTTAAAAAAATTCACCTTAAATCGACCCCGTAAATCGACACCGATTGCGGGTCTCGCCGCGCTTGGGTTACTGTTGCACCCGTTTCAACTATACAAAGTAGAGATTTCCTCTTCACTTTGAACGCAGCATGATTATTTCGAGAAAAAATTTTCCGAAAAAAATCGGAAAAATCGAGAACTCGATTTTCCGATTCCGACCAAGCCTGGTACCTGACATCCTAGATTTTCAGTCTTCTTTTGGTTTTCTAGGCCACCATAATCATATATAATTAACTTCTTTTGCCTGGTTCCTTTTCTTGGTCGGTTTCCGATTTCAAAAAATTTTCAGAATGACTGAAAATATTGTTTCATTTCCTATTATCATTYCCTTTATGGCTTTATCAATTATCGGTTTGATTGGAAATCTAACTATTCTTTTGGTGACATTTAAAATTAAAACTTTGCAAACGAGATGTTGTATTCTGATTGGGATAATGGCCTTTTTCAATTTTGTAGTTTGTGTCTATGTGGTACGTTTCCTAGGAGAAGCGAAGTTAGCTTCCATCTCCGTTGGTCTAAAATCGTCGACCGCCGACCGACAGCTGGCTGGGTCGGTGGTCGGTCGGTCGGATAAGTTTCCCGACCGAATGGAAGCTTTAGAGCCAATCCGAACTTCGTAATCTATTTCAGACTCAATTAAGAATAATGATGTTGCTTGGATTCTACGATATCTTCAATACCACTTGTTTTCTATTCTCCTTCTATGGAATTTTCGCAATGAATATGCAGAGTATTTTGAGTTTATTTATAGGATTGGACAGGTTGTATAAAGTGTCTTTTCCAGTCAAGTAAGCATTTTTGAGCTTAAATTGCTAATGAAAACTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAGTCTTCTTTTGGTTTTCTA</pcr_primer_p1>
		<pcr_primer_p2>TTATCCCAATCAGAATACAACAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCAGTCTTCTTTTGGTTTTCTAGGCCACCATAATCATATATAATTAACTTCTTTTGCCTGGTTCCTTTTCTTGGTCGGTTTCCGATTTCAAAAAATTTTCAGAATGACTGAAAATATTGTTTCATTTCCTATTATCATTTCCTTTATGGCTTTATCAATTATCGGTTTGATTGGAAATCTAACTATTCTTTTGGTGACATTTAAAATTAAAACTTTGCAAACGAGATGTTGTATTCTGATTGGGATAA</canonical_amplicon>
		<polymorphic_amplicon>TTCAGTCTTCTTTTGGTTTTCTAGGCCACCATAATCATATATAATTAACTTCTTTTGCCTGGTTCCTTTTCTTGGTCGGTTTCCGATTTCAAAAAATTTTCAGAATGACTGAAAATATTGTTTCATTTCCTATTATCATTYCCTTTATGGCTTTATCAATTATCGGTTTGATTGGAAATCTAACTATTCTTTTGGTGACATTTAAAATTAAAACTTTGCAAACGAGATGTTGTATTCTGATTGGGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29542</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>42206</contig_pos>
        <strand>+</strand>
        <context>TCGGTTTGAT[C/T]GGAAATCTMA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATTTCCTATTATCATTTCCTTTATGGCTTTATCAATTATCGGTTTGAT</left_flank>
        <right_flank>GGAAATCTAACTATTCTTTTGGTGACATTTAAAATTAAAACTTTGCAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAAAAGAAGTCTATTAAGAACAGTATAAACCGAAAAAAAAATGTTGAAAAAGTAATGAAAACCCTGATTAAAGTATGTTTTCATTCAAAAAAGAATTAATTTTAAAAAAATTCACCTTAAATCGACCCCGTAAATCGACACCGATTGCGGGTCTCGCCGCGCTTGGGTTACTGTTGCACCCGTTTCAACTATACAAAGTAGAGATTTCCTCTTCACTTTGAACGCAGCATGATTATTTCGAGAAAAAATTTTCCGAAAAAAATCGGAAAAATCGAGAACTCGATTTTCCGATTCCGACCAAGCCTGGTACCTGACATCCTAGATTTTCAGTCTTCTTTTGGTTTTCTAGGCCACCATAATCATATATAATTAACTTCTTTTGCCTGGTTCCTTTTCTTGGTCGGTTTCCGATTTCAAAAAATTTTCAGAATGACTGAAAATATTGTTTCATTTCCTATTATCATTTCCTTTATGGCTTTATCAATTATCGGTTTGATTGGAAATCTAACTATTCTTTTGGTGACATTTAAAATTAAAACTTTGCAAACGAGATGTTGTATTCTGATTGGGATAATGGCCTTTTTCAATTTTGTAGTTTGTGTCTATGTGGTACGTTTCCTAGGAGAAGCGAAGTTAGCTTCCATCTCCGTTGGTCTAAAATCGTCGACCGCCGACCGACAGCTGGCTGGGTCGGTGGTCGGTCGGTCGGATAAGTTTCCCGACCGAATGGAAGCTTTAGAGCCAATCCGAACTTCGTAATCTATTTCAGACTCAATTAAGAATAATGATGTTGCTTGGATTCTACGATATCTTCAATACCACTTGTTTTCTATTCTCCTTCTATGGAATTTTCGCAATGAATATGCAGAGTATTTTGAGTTTATTTATAGGATTGGACAGGTTGTATAAAGTGTCTTTTCCAGTCAAGTAAGCATTTTTGAGCTTAAATTGCTAATGAAAACTTCAGATACTCAAAACTTCCAATATCCCATTACATC</canonical>
            <polymorphic>AATAAAAGAAGTCTATTAAGAACAGTATAAACCGAAAAAAAAATGTTGAAAAAGTAATGAAAACCCTGATTAAAGTATGTTTTCATTCAAAAAAGAATTAATTTTAAAAAAATTCACCTTAAATCGACCCCGTAAATCGACACCGATTGCGGGTCTCGCCGCGCTTGGGTTACTGTTGCACCCGTTTCAACTATACAAAGTAGAGATTTCCTCTTCACTTTGAACGCAGCATGATTATTTCGAGAAAAAATTTTCCGAAAAAAATCGGAAAAATCGAGAACTCGATTTTCCGATTCCGACCAAGCCTGGTACCTGACATCCTAGATTTTCAGTCTTCTTTTGGTTTTCTAGGCCACCATAATCATATATAATTAACTTCTTTTGCCTGGTTCCTTTTCTTGGTCGGTTTCCGATTTCAAAAAATTTTCAGAATGACTGAAAATATTGTTTCATTTCCTATTATCATTTCCTTTATGGCTTTATCAATTATCGGTTTGATYGGAAATCTAACTATTCTTTTGGTGACATTTAAAATTAAAACTTTGCAAACGAGATGTTGTATTCTGATTGGGATAATGGCCTTTTTCAATTTTGTAGTTTGTGTCTATGTGGTACGTTTCCTAGGAGAAGCGAAGTTAGCTTCCATCTCCGTTGGTCTAAAATCGTCGACCGCCGACCGACAGCTGGCTGGGTCGGTGGTCGGTCGGTCGGATAAGTTTCCCGACCGAATGGAAGCTTTAGAGCCAATCCGAACTTCGTAATCTATTTCAGACTCAATTAAGAATAATGATGTTGCTTGGATTCTACGATATCTTCAATACCACTTGTTTTCTATTCTCCTTCTATGGAATTTTCGCAATGAATATGCAGAGTATTTTGAGTTTATTTATAGGATTGGACAGGTTGTATAAAGTGTCTTTTCCAGTCAAGTAAGCATTTTTGAGCTTAAATTGCTAATGAAAACTTCAGATACTCAAAACTTCCAATATCCCATTACATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAGTCTTCTTTTGGTTTTCTA</pcr_primer_p1>
		<pcr_primer_p2>TTATCCCAATCAGAATACAACAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCAGTCTTCTTTTGGTTTTCTAGGCCACCATAATCATATATAATTAACTTCTTTTGCCTGGTTCCTTTTCTTGGTCGGTTTCCGATTTCAAAAAATTTTCAGAATGACTGAAAATATTGTTTCATTTCCTATTATCATTTCCTTTATGGCTTTATCAATTATCGGTTTGATTGGAAATCTAACTATTCTTTTGGTGACATTTAAAATTAAAACTTTGCAAACGAGATGTTGTATTCTGATTGGGATAA</canonical_amplicon>
		<polymorphic_amplicon>TTCAGTCTTCTTTTGGTTTTCTAGGCCACCATAATCATATATAATTAACTTCTTTTGCCTGGTTCCTTTTCTTGGTCGGTTTCCGATTTCAAAAAATTTTCAGAATGACTGAAAATATTGTTTCATTTCCTATTATCATTTCCTTTATGGCTTTATCAATTATCGGTTTGATYGGAAATCTAACTATTCTTTTGGTGACATTTAAAATTAAAACTTTGCAAACGAGATGTTGTATTCTGATTGGGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29543</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>42215</contig_pos>
        <strand>+</strand>
        <context>TYGGAAATCT[A/C]ACTATTCTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTATCATTTCCTTTATGGCTTTATCAATTATCGGTTTGATTGGAAATCT</left_flank>
        <right_flank>ACTATTCTTTTGGTGACATTTAAAATTAAAACTTTGCAAACGAGATGTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCTATTAAGAACAGTATAAACCGAAAAAAAAATGTTGAAAAAGTAATGAAAACCCTGATTAAAGTATGTTTTCATTCAAAAAAGAATTAATTTTAAAAAAATTCACCTTAAATCGACCCCGTAAATCGACACCGATTGCGGGTCTCGCCGCGCTTGGGTTACTGTTGCACCCGTTTCAACTATACAAAGTAGAGATTTCCTCTTCACTTTGAACGCAGCATGATTATTTCGAGAAAAAATTTTCCGAAAAAAATCGGAAAAATCGAGAACTCGATTTTCCGATTCCGACCAAGCCTGGTACCTGACATCCTAGATTTTCAGTCTTCTTTTGGTTTTCTAGGCCACCATAATCATATATAATTAACTTCTTTTGCCTGGTTCCTTTTCTTGGTCGGTTTCCGATTTCAAAAAATTTTCAGAATGACTGAAAATATTGTTTCATTTCCTATTATCATTTCCTTTATGGCTTTATCAATTATCGGTTTGATTGGAAATCTAACTATTCTTTTGGTGACATTTAAAATTAAAACTTTGCAAACGAGATGTTGTATTCTGATTGGGATAATGGCCTTTTTCAATTTTGTAGTTTGTGTCTATGTGGTACGTTTCCTAGGAGAAGCGAAGTTAGCTTCCATCTCCGTTGGTCTAAAATCGTCGACCGCCGACCGACAGCTGGCTGGGTCGGTGGTCGGTCGGTCGGATAAGTTTCCCGACCGAATGGAAGCTTTAGAGCCAATCCGAACTTCGTAATCTATTTCAGACTCAATTAAGAATAATGATGTTGCTTGGATTCTACGATATCTTCAATACCACTTGTTTTCTATTCTCCTTCTATGGAATTTTCGCAATGAATATGCAGAGTATTTTGAGTTTATTTATAGGATTGGACAGGTTGTATAAAGTGTCTTTTCCAGTCAAGTAAGCATTTTTGAGCTTAAATTGCTAATGAAAACTTCAGATACTCAAAACTTCCAATATCCCATTACATCATTGGTTTT</canonical>
            <polymorphic>AGTCTATTAAGAACAGTATAAACCGAAAAAAAAATGTTGAAAAAGTAATGAAAACCCTGATTAAAGTATGTTTTCATTCAAAAAAGAATTAATTTTAAAAAAATTCACCTTAAATCGACCCCGTAAATCGACACCGATTGCGGGTCTCGCCGCGCTTGGGTTACTGTTGCACCCGTTTCAACTATACAAAGTAGAGATTTCCTCTTCACTTTGAACGCAGCATGATTATTTCGAGAAAAAATTTTCCGAAAAAAATCGGAAAAATCGAGAACTCGATTTTCCGATTCCGACCAAGCCTGGTACCTGACATCCTAGATTTTCAGTCTTCTTTTGGTTTTCTAGGCCACCATAATCATATATAATTAACTTCTTTTGCCTGGTTCCTTTTCTTGGTCGGTTTCCGATTTCAAAAAATTTTCAGAATGACTGAAAATATTGTTTCATTTCCTATTATCATTTCCTTTATGGCTTTATCAATTATCGGTTTGATTGGAAATCTMACTATTCTTTTGGTGACATTTAAAATTAAAACTTTGCAAACGAGATGTTGTATTCTGATTGGGATAATGGCCTTTTTCAATTTTGTAGTTTGTGTCTATGTGGTACGTTTCCTAGGAGAAGCGAAGTTAGCTTCCATCTCCGTTGGTCTAAAATCGTCGACCGCCGACCGACAGCTGGCTGGGTCGGTGGTCGGTCGGTCGGATAAGTTTCCCGACCGAATGGAAGCTTTAGAGCCAATCCGAACTTCGTAATCTATTTCAGACTCAATTAAGAATAATGATGTTGCTTGGATTCTACGATATCTTCAATACCACTTGTTTTCTATTCTCCTTCTATGGAATTTTCGCAATGAATATGCAGAGTATTTTGAGTTTATTTATAGGATTGGACAGGTTGTATAAAGTGTCTTTTCCAGTCAAGTAAGCATTTTTGAGCTTAAATTGCTAATGAAAACTTCAGATACTCAAAACTTCCAATATCCCATTACATCATTGGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAGTCTTCTTTTGGTTTTCTA</pcr_primer_p1>
		<pcr_primer_p2>TTATCCCAATCAGAATACAACAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCAGTCTTCTTTTGGTTTTCTAGGCCACCATAATCATATATAATTAACTTCTTTTGCCTGGTTCCTTTTCTTGGTCGGTTTCCGATTTCAAAAAATTTTCAGAATGACTGAAAATATTGTTTCATTTCCTATTATCATTTCCTTTATGGCTTTATCAATTATCGGTTTGATTGGAAATCTAACTATTCTTTTGGTGACATTTAAAATTAAAACTTTGCAAACGAGATGTTGTATTCTGATTGGGATAA</canonical_amplicon>
		<polymorphic_amplicon>TTCAGTCTTCTTTTGGTTTTCTAGGCCACCATAATCATATATAATTAACTTCTTTTGCCTGGTTCCTTTTCTTGGTCGGTTTCCGATTTCAAAAAATTTTCAGAATGACTGAAAATATTGTTTCATTTCCTATTATCATTTCCTTTATGGCTTTATCAATTATCGGTTTGATTGGAAATCTMACTATTCTTTTGGTGACATTTAAAATTAAAACTTTGCAAACGAGATGTTGTATTCTGATTGGGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29544</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>45417</contig_pos>
        <strand></strand>
        <context>TTTTACAGCC[C/A]CTAAAACATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ACAGCGGCGTTTCTTTTAATCTTATCTCTCTAATACCATATTTTACAGCC</left_flank>
        <right_flank>CTAAAACATCTTGTTGACGGTACTCACCAGAACCTGTGTCCTCTTTTTTA</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCTTTTCTCATCATGCAAGAAACCCTCGGAAAAAATAAAATGGTTTCACCGCGAAACAAAACTTTCGGTGACTACTGTAGCGCTACTGTAAAGCGCTGCAAATTTCCTCGAAAAGTGTGGCGTTTTTTTCTAACTTCCGGCGACAGTTTTTCGCTTTCCTTGCCTGATAATTCGTGTCGAATTCGTAGAATATCATTTGAAATTTTATTAAAATTATCTATCTACAAATCCGCTTCAATGCGCGCCAAGAATTTTAGCAAGCATTTTCGTTTGGCGCCAAATTCCTCGCACCTTCGTTTCCTTCGATTTTTGTCTCTTTTTTTCTTGCGCCTTTCTTTTCTGCGAACTCTCTGCCGAAAAAAAAAAAAGCTCTTTGACATGGATTTCAATTTTCTTCGTCATTGCTTCTCTTCGACCGTCTGCTGTAACGTCTGTTGTCTCGAAACAACAGCGGCGTTTCTTTTAATCTTATCTCTCTAATACCATATTTTACAGCCCCTAAAACATCTTGTTGACGGTACTCACCAGAACCTGTGTCCTCTTTTTTAAATCTTTTATTATTATAACTAGGTGAAGGTGGACTTGCTCTTACCCCATTCCCACTTTCTGACCTCTTCCTAGGGGCGGGATCCCACCTCAATAACGCATTCATTTTGCAGAACGCGCGCGGGCACAACCCCCAACAAGCTCCGCCCCCCTGTCTTCGTTCGTCGTTCTCGATCTCGATCCGACGACATCAGAATATTTATTCGTCAGCTATGCTCATCCGATCGCTTCTCGTTTTGGCGTGTCTTCTCGCCTGTGCACCGACGACGGTTAACTCATGGTGGTAAGTGTTTTGAGATATTATTAGGTTGCGTAGTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTC</canonical>
            <polymorphic>CCTCTTTTCTCATCATGCAAGAAACCCTCGGAAAAAATAAAATGGTTTCACCGCGAAACAAAACTTTCGGTGACTACTGTAGCGCTACTGTAAAGCGCTGCAAATTTCCTCGAAAAGTGTGGCGTTTTTTTCTAACTTCCGGCGACAGTTTTTCGCTTTCCTTGCCTGATAATTCGTGTCGAATTCGTAGAATATCATTTGAAATTTTATTAAAATTATCTATCTACAAATCCGCTTCAATGCGCGCCAAGAATTTTAGCAAGCATTTTCGTTTGGCGCCAAATTCCTCGCACCTTCGTTTCCTTCGATTTTTGTCTCTTTTTTTCTTGCGCCTTTCTTTTCTGCGAACTCTCTGCCGAAAAAAAAAAAAGCTCTTTGACATGGATTTCAATTTTCTTCGTCATTGCTTCTCTTCGACCGTCTGCTGTAACGTCTGTTGTCTCGAAACAACAGCGGCGTTTCTTTTAATCTTATCTCTCTAATACCATATTTTACAGCCMCTAAAACATCTTGTTGACGGTACTCACCAGAACCTGTGTCCTCTTTTTTAAATCTTTTATTATTATAACTAGGTGAAGGTGGACTTGCTCTTACCCCATTCCCACTTTCTGACCTCTTCCTAGGGGCGGGATCCCACCTCAATAACGCATTCATTTTGCAGAACGCGCGCGGGCACAACCCCCAACAAGCTCCGCCCCCCTGTCTTCGTTCGTCGTTCTCGATCTCGATCCGACGACATCAGAATATTTATTCGTCAGCTATGCTCATCCGATCGCTTCTCGTTTTGGCGTGTCTTCTCGCCTGTGCACCGACGACGGTTAACTCATGGTGGTAAGTGTTTTGAGATATTATTAGGTTGCGTAGTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTGACATGGATTTCAATTTT</pcr_primer_p1>
		<pcr_primer_p2>TAGGAAGAGGTCAGAAAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTTGACATGGATTTCAATTTTCTTCGTCATTGCTTCTCTTCGACCGTCTGCTGTAACGTCTGTTGTCTCGAAACAACAGCGGCGTTTCTTTTAATCTTATCTCTCTAATACCATATTTTACAGCCCCTAAAACATCTTGTTGACGGTACTCACCAGAACCTGTGTCCTCTTTTTTAAATCTTTTATTATTATAACTAGGTGAAGGTGGACTTGCTCTTACCCCATTCCCACTTTCTGACCTCTTCCTA</canonical_amplicon>
		<polymorphic_amplicon>CTTTGACATGGATTTCAATTTTCTTCGTCATTGCTTCTCTTCGACCGTCTGCTGTAACGTCTGTTGTCTCGAAACAACAGCGGCGTTTCTTTTAATCTTATCTCTCTAATACCATATTTTACAGCCMCTAAAACATCTTGTTGACGGTACTCACCAGAACCTGTGTCCTCTTTTTTAAATCTTTTATTATTATAACTAGGTGAAGGTGGACTTGCTCTTACCCCATTCCCACTTTCTGACCTCTTCCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29545</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>45480</contig_pos>
        <strand></strand>
        <context>TCTTTTATTA[T/C]TATAACTAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTTGACGGTACTCACCAGAACCTGTGTCCTCTTTTTTAAATCTTTTATTA</left_flank>
        <right_flank>TATAACTAGGTGAAGGTGGACTTGCTCTTACCCCATTCCCACTTTCTGAC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTCGGTGACTACTGTAGCGCTACTGTAAAGCGCTGCAAATTTCCTCGAAAAGTGTGGCGTTTTTTTCTAACTTCCGGCGACAGTTTTTCGCTTTCCTTGCCTGATAATTCGTGTCGAATTCGTAGAATATCATTTGAAATTTTATTAAAATTATCTATCTACAAATCCGCTTCAATGCGCGCCAAGAATTTTAGCAAGCATTTTCGTTTGGCGCCAAATTCCTCGCACCTTCGTTTCCTTCGATTTTTGTCTCTTTTTTTCTTGCGCCTTTCTTTTCTGCGAACTCTCTGCCGAAAAAAAAAAAAGCTCTTTGACATGGATTTCAATTTTCTTCGTCATTGCTTCTCTTCGACCGTCTGCTGTAACGTCTGTTGTCTCGAAACAACAGCGGCGTTTCTTTTAATCTTATCTCTCTAATACCATATTTTACAGCCCCTAAAACATCTTGTTGACGGTACTCACCAGAACCTGTGTCCTCTTTTTTAAATCTTTTATTATTATAACTAGGTGAAGGTGGACTTGCTCTTACCCCATTCCCACTTTCTGACCTCTTCCTAGGGGCGGGATCCCACCTCAATAACGCATTCATTTTGCAGAACGCGCGCGGGCACAACCCCCAACAAGCTCCGCCCCCCTGTCTTCGTTCGTCGTTCTCGATCTCGATCCGACGACATCAGAATATTTATTCGTCAGCTATGCTCATCCGATCGCTTCTCGTTTTGGCGTGTCTTCTCGCCTGTGCACCGACGACGGTTAACTCATGGTGGTAAGTGTTTTGAGATATTATTAGGTTGCGTAGTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAA</canonical>
            <polymorphic>CTTTCGGTGACTACTGTAGCGCTACTGTAAAGCGCTGCAAATTTCCTCGAAAAGTGTGGCGTTTTTTTCTAACTTCCGGCGACAGTTTTTCGCTTTCCTTGCCTGATAATTCGTGTCGAATTCGTAGAATATCATTTGAAATTTTATTAAAATTATCTATCTACAAATCCGCTTCAATGCGCGCCAAGAATTTTAGCAAGCATTTTCGTTTGGCGCCAAATTCCTCGCACCTTCGTTTCCTTCGATTTTTGTCTCTTTTTTTCTTGCGCCTTTCTTTTCTGCGAACTCTCTGCCGAAAAAAAAAAAAGCTCTTTGACATGGATTTCAATTTTCTTCGTCATTGCTTCTCTTCGACCGTCTGCTGTAACGTCTGTTGTCTCGAAACAACAGCGGCGTTTCTTTTAATCTTATCTCTCTAATACCATATTTTACAGCCCCTAAAACATCTTGTTGACGGTACTCACCAGAACCTGTGTCCTCTTTTTTAAATCTTTTATTAYTATAACTAGGTGAAGGTGGACTTGCTCTTACCCCATTCCCACTTTCTGACCTCTTCCTAGGGGCGGGATCCCACCTCAATAACGCATTCATTTTGCAGAACGCGCGCGGGCACAACCCCCAACAAGCTCCGCCCCCCTGTCTTCGTTCGTCGTTCTCGATCTCGATCCGACGACATCAGAATATTTATTCGTCAGCTATGCTCATCCGATCGCTTCTCGTTTTGGCGTGTCTTCTCGCCTGTGCACCGACGACGGTTAACTCATGGTGGTAAGTGTTTTGAGATATTATTAGGTTGCGTAGTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTGACATGGATTTCAATTTT</pcr_primer_p1>
		<pcr_primer_p2>TAGGAAGAGGTCAGAAAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTTGACATGGATTTCAATTTTCTTCGTCATTGCTTCTCTTCGACCGTCTGCTGTAACGTCTGTTGTCTCGAAACAACAGCGGCGTTTCTTTTAATCTTATCTCTCTAATACCATATTTTACAGCCCCTAAAACATCTTGTTGACGGTACTCACCAGAACCTGTGTCCTCTTTTTTAAATCTTTTATTATTATAACTAGGTGAAGGTGGACTTGCTCTTACCCCATTCCCACTTTCTGACCTCTTCCTA</canonical_amplicon>
		<polymorphic_amplicon>CTTTGACATGGATTTCAATTTTCTTCGTCATTGCTTCTCTTCGACCGTCTGCTGTAACGTCTGTTGTCTCGAAACAACAGCGGCGTTTCTTTTAATCTTATCTCTCTAATACCATATTTTACAGCCCCTAAAACATCTTGTTGACGGTACTCACCAGAACCTGTGTCCTCTTTTTTAAATCTTTTATTAYTATAACTAGGTGAAGGTGGACTTGCTCTTACCCCATTCCCACTTTCTGACCTCTTCCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29546</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>45666</contig_pos>
        <strand></strand>
        <context>TCAGAATATT[T/C]ATTCGTCAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCTGTCTTCGTTCGTCGTTCTCGATCTCGATCCGACGACATCAGAATATT</left_flank>
        <right_flank>ATTCGTCAGCTATGCTCATCCGATCGCTTCTCGTTTTGGCGTGTCTTCTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATTTTAGCAAGCATTTTCGTTTGGCGCCAAATTCCTCGCACCTTCGTTTCCTTCGATTTTTGTCTCTTTTTTTCTTGCGCCTTTCTTTTCTGCGAACTCTCTGCCGAAAAAAAAAAAAGCTCTTTGACATGGATTTCAATTTTCTTCGTCATTGCTTCTCTTCGACCGTCTGCTGTAACGTCTGTTGTCTCGAAACAACAGCGGCGTTTCTTTTAATCTTATCTCTCTAATACCATATTTTACAGCCCCTAAAACATCTTGTTGACGGTACTCACCAGAACCTGTGTCCTCTTTTTTAAATCTTTTATTATTATAACTAGGTGAAGGTGGACTTGCTCTTACCCCATTCCCACTTTCTGACCTCTTCCTAGGGGCGGGATCCCACCTCAATAACGCATTCATTTTGCAGAACGCGCGCGGGCACAACCCCCAACAAGCTCCGCCCCCCTGTCTTCGTTCGTCGTTCTCGATCTCGATCCGACGACATCAGAATATTTATTCGTCAGCTATGCTCATCCGATCGCTTCTCGTTTTGGCGTGTCTTCTCGCCTGTGCACCGACGACGGTTAACTCATGGTGGTAAGTGTTTTGAGATATTATTAGGTTGCGTAGTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTACTACTCCCTCTTTCATATGTTCCCACAGTACCGCAGATTTCCTTCTGTCATAAAAGCCCCTGCTGTCGGTGAGAACCGAAAGGGTCCCATAGGCGATCGTAAAATTGCGCGCCGCCTAAAATTGTTTGGCAAC</canonical>
            <polymorphic>AGAATTTTAGCAAGCATTTTCGTTTGGCGCCAAATTCCTCGCACCTTCGTTTCCTTCGATTTTTGTCTCTTTTTTTCTTGCGCCTTTCTTTTCTGCGAACTCTCTGCCGAAAAAAAAAAAAGCTCTTTGACATGGATTTCAATTTTCTTCGTCATTGCTTCTCTTCGACCGTCTGCTGTAACGTCTGTTGTCTCGAAACAACAGCGGCGTTTCTTTTAATCTTATCTCTCTAATACCATATTTTACAGCCCCTAAAACATCTTGTTGACGGTACTCACCAGAACCTGTGTCCTCTTTTTTAAATCTTTTATTATTATAACTAGGTGAAGGTGGACTTGCTCTTACCCCATTCCCACTTTCTGACCTCTTCCTAGGGGCGGGATCCCACCTCAATAACGCATTCATTTTGCAGAACGCGCGCGGGCACAACCCCCAACAAGCTCCGCCCCCCTGTCTTCGTTCGTCGTTCTCGATCTCGATCCGACGACATCAGAATATTYATTCGTCAGCTATGCTCATCCGATCGCTTCTCGTTTTGGCGTGTCTTCTCGCCTGTGCACCGACGACGGTTAACTCATGGTGGTAAGTGTTTTGAGATATTATTAGGTTGCGTAGTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTACTACTCCCTCTTTCATATGTTCCCACAGTACCGCAGATTTCCTTCTGTCATAAAAGCCCCTGCTGTCGGTGAGAACCGAAAGGGTCCCATAGGCGATCGTAAAATTGCGCGCCGCCTAAAATTGTTTGGCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACTTTCTGACCTCTTCCTA</pcr_primer_p1>
		<pcr_primer_p2>TATCTCAAAACACTTACCACCAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCACTTTCTGACCTCTTCCTAGGGGCGGGATCCCACCTCAATAACGCATTCATTTTGCAGAACGCGCGCGGGCACAACCCCCAACAAGCTCCGCCCCCCTGTCTTCGTTCGTCGTTCTCGATCTCGATCCGACGACATCAGAATATTTATTCGTCAGCTATGCTCATCCGATCGCTTCTCGTTTTGGCGTGTCTTCTCGCCTGTGCACCGACGACGGTTAACTCATGGTGGTAAGTGTTTTGAGATA</canonical_amplicon>
		<polymorphic_amplicon>CCACTTTCTGACCTCTTCCTAGGGGCGGGATCCCACCTCAATAACGCATTCATTTTGCAGAACGCGCGCGGGCACAACCCCCAACAAGCTCCGCCCCCCTGTCTTCGTTCGTCGTTCTCGATCTCGATCCGACGACATCAGAATATTYATTCGTCAGCTATGCTCATCCGATCGCTTCTCGTTTTGGCGTGTCTTCTCGCCTGTGCACCGACGACGGTTAACTCATGGTGGTAAGTGTTTTGAGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29547</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>45811</contig_pos>
        <strand></strand>
        <context>ATGTCTGTAA[C/T]CTTCAYaggc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGATATTATTAGGTTGCGTAGTAATCAGCAAGGTTCAAAAATGTCTGTAA</left_flank>
        <right_flank>CTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGAC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTCGTCATTGCTTCTCTTCGACCGTCTGCTGTAACGTCTGTTGTCTCGAAACAACAGCGGCGTTTCTTTTAATCTTATCTCTCTAATACCATATTTTACAGCCCCTAAAACATCTTGTTGACGGTACTCACCAGAACCTGTGTCCTCTTTTTTAAATCTTTTATTATTATAACTAGGTGAAGGTGGACTTGCTCTTACCCCATTCCCACTTTCTGACCTCTTCCTAGGGGCGGGATCCCACCTCAATAACGCATTCATTTTGCAGAACGCGCGCGGGCACAACCCCCAACAAGCTCCGCCCCCCTGTCTTCGTTCGTCGTTCTCGATCTCGATCCGACGACATCAGAATATTTATTCGTCAGCTATGCTCATCCGATCGCTTCTCGTTTTGGCGTGTCTTCTCGCCTGTGCACCGACGACGGTTAACTCATGGTGGTAAGTGTTTTGAGATATTATTAGGTTGCGTAGTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTACTACTCCCTCTTTCATATGTTCCCACAGTACCGCAGATTTCCTTCTGTCATAAAAGCCCCTGCTGTCGGTGAGAACCGAAAGGGTCCCATAGGCGATCGTAAAATTGCGCGCCGCCTAAAATTGTTTGGCAACATCACAGTAATCCCCCCGACGACAGCCGTTCTTCGGCACCACCAATAGGATTTTATGAGCTATAAAAATCGTAGACCTTGAACGAACCAAAATTACCTTTTCTAGGTTGCTTTCGAAAGCGGACACGTCGTCACCCACAACGTCC</canonical>
            <polymorphic>TCTTCGTCATTGCTTCTCTTCGACCGTCTGCTGTAACGTCTGTTGTCTCGAAACAACAGCGGCGTTTCTTTTAATCTTATCTCTCTAATACCATATTTTACAGCCCCTAAAACATCTTGTTGACGGTACTCACCAGAACCTGTGTCCTCTTTTTTAAATCTTTTATTATTATAACTAGGTGAAGGTGGACTTGCTCTTACCCCATTCCCACTTTCTGACCTCTTCCTAGGGGCGGGATCCCACCTCAATAACGCATTCATTTTGCAGAACGCGCGCGGGCACAACCCCCAACAAGCTCCGCCCCCCTGTCTTCGTTCGTCGTTCTCGATCTCGATCCGACGACATCAGAATATTTATTCGTCAGCTATGCTCATCCGATCGCTTCTCGTTTTGGCGTGTCTTCTCGCCTGTGCACCGACGACGGTTAACTCATGGTGGTAAGTGTTTTGAGATATTATTAGGTTGCGTAGTAATCAGCAAGGTTCAAAAATGTCTGTAAYCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTACTACTCCCTCTTTCATATGTTCCCACAGTACCGCAGATTTCCTTCTGTCATAAAAGCCCCTGCTGTCGGTGAGAACCGAAAGGGTCCCATAGGCGATCGTAAAATTGCGCGCCGCCTAAAATTGTTTGGCAACATCACAGTAATCCCCCCGACGACAGCCGTTCTTCGGCACCACCAATAGGATTTTATGAGCTATAAAAATCGTAGACCTTGAACGAACCAAAATTACCTTTTCTAGGTTGCTTTCGAAAGCGGACACGTCGTCACCCACAACGTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>463 439 50 32 16</canonical_bands>
                <polymorphic_bands>513 439 32 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAGATATTATTAGGTTGCGTAG</pcr_primer_p1>
		<pcr_primer_p2>GTAGGAAAATTCGGCTAAATG</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>TTGAGATATTATTAGGTTGCGTAGTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTAC</canonical_amplicon>
		<polymorphic_amplicon>TTGAGATATTATTAGGTTGCGTAGTAATCAGCAAGGTTCAAAAATGTCTGTAAYCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29548</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>45817</contig_pos>
        <strand></strand>
        <context>GTAAYCTTCA[T/C]aggcttcgta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TATTAGGTTGCGTAGTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCA</left_flank>
        <right_flank>AGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATTGCTTCTCTTCGACCGTCTGCTGTAACGTCTGTTGTCTCGAAACAACAGCGGCGTTTCTTTTAATCTTATCTCTCTAATACCATATTTTACAGCCCCTAAAACATCTTGTTGACGGTACTCACCAGAACCTGTGTCCTCTTTTTTAAATCTTTTATTATTATAACTAGGTGAAGGTGGACTTGCTCTTACCCCATTCCCACTTTCTGACCTCTTCCTAGGGGCGGGATCCCACCTCAATAACGCATTCATTTTGCAGAACGCGCGCGGGCACAACCCCCAACAAGCTCCGCCCCCCTGTCTTCGTTCGTCGTTCTCGATCTCGATCCGACGACATCAGAATATTTATTCGTCAGCTATGCTCATCCGATCGCTTCTCGTTTTGGCGTGTCTTCTCGCCTGTGCACCGACGACGGTTAACTCATGGTGGTAAGTGTTTTGAGATATTATTAGGTTGCGTAGTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTACTACTCCCTCTTTCATATGTTCCCACAGTACCGCAGATTTCCTTCTGTCATAAAAGCCCCTGCTGTCGGTGAGAACCGAAAGGGTCCCATAGGCGATCGTAAAATTGCGCGCCGCCTAAAATTGTTTGGCAACATCACAGTAATCCCCCCGACGACAGCCGTTCTTCGGCACCACCAATAGGATTTTATGAGCTATAAAAATCGTAGACCTTGAACGAACCAAAATTACCTTTTCTAGGTTGCTTTCGAAAGCGGACACGTCGTCACCCACAACGTCCAACTCG</canonical>
            <polymorphic>TCATTGCTTCTCTTCGACCGTCTGCTGTAACGTCTGTTGTCTCGAAACAACAGCGGCGTTTCTTTTAATCTTATCTCTCTAATACCATATTTTACAGCCCCTAAAACATCTTGTTGACGGTACTCACCAGAACCTGTGTCCTCTTTTTTAAATCTTTTATTATTATAACTAGGTGAAGGTGGACTTGCTCTTACCCCATTCCCACTTTCTGACCTCTTCCTAGGGGCGGGATCCCACCTCAATAACGCATTCATTTTGCAGAACGCGCGCGGGCACAACCCCCAACAAGCTCCGCCCCCCTGTCTTCGTTCGTCGTTCTCGATCTCGATCCGACGACATCAGAATATTTATTCGTCAGCTATGCTCATCCGATCGCTTCTCGTTTTGGCGTGTCTTCTCGCCTGTGCACCGACGACGGTTAACTCATGGTGGTAAGTGTTTTGAGATATTATTAGGTTGCGTAGTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCAYAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTACTACTCCCTCTTTCATATGTTCCCACAGTACCGCAGATTTCCTTCTGTCATAAAAGCCCCTGCTGTCGGTGAGAACCGAAAGGGTCCCATAGGCGATCGTAAAATTGCGCGCCGCCTAAAATTGTTTGGCAACATCACAGTAATCCCCCCGACGACAGCCGTTCTTCGGCACCACCAATAGGATTTTATGAGCTATAAAAATCGTAGACCTTGAACGAACCAAAATTACCTTTTCTAGGTTGCTTTCGAAAGCGGACACGTCGTCACCCACAACGTCCAACTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGATATTATTAGGTTGCGTAG</pcr_primer_p1>
		<pcr_primer_p2>GTAGGAAAATTCGGCTAAATG</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>TTGAGATATTATTAGGTTGCGTAGTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTAC</canonical_amplicon>
		<polymorphic_amplicon>TTGAGATATTATTAGGTTGCGTAGTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCAYAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29549</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>45835</contig_pos>
        <strand></strand>
        <context>gtacagctat[G/A]agcatgctgc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTAT</left_flank>
        <right_flank>AGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTCTGCTGTAACGTCTGTTGTCTCGAAACAACAGCGGCGTTTCTTTTAATCTTATCTCTCTAATACCATATTTTACAGCCCCTAAAACATCTTGTTGACGGTACTCACCAGAACCTGTGTCCTCTTTTTTAAATCTTTTATTATTATAACTAGGTGAAGGTGGACTTGCTCTTACCCCATTCCCACTTTCTGACCTCTTCCTAGGGGCGGGATCCCACCTCAATAACGCATTCATTTTGCAGAACGCGCGCGGGCACAACCCCCAACAAGCTCCGCCCCCCTGTCTTCGTTCGTCGTTCTCGATCTCGATCCGACGACATCAGAATATTTATTCGTCAGCTATGCTCATCCGATCGCTTCTCGTTTTGGCGTGTCTTCTCGCCTGTGCACCGACGACGGTTAACTCATGGTGGTAAGTGTTTTGAGATATTATTAGGTTGCGTAGTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTACTACTCCCTCTTTCATATGTTCCCACAGTACCGCAGATTTCCTTCTGTCATAAAAGCCCCTGCTGTCGGTGAGAACCGAAAGGGTCCCATAGGCGATCGTAAAATTGCGCGCCGCCTAAAATTGTTTGGCAACATCACAGTAATCCCCCCGACGACAGCCGTTCTTCGGCACCACCAATAGGATTTTATGAGCTATAAAAATCGTAGACCTTGAACGAACCAAAATTACCTTTTCTAGGTTGCTTTCGAAAGCGGACACGTCGTCACCCACAACGTCCAACTCGCCGATTCTCTGCAAAAAT</canonical>
            <polymorphic>CGTCTGCTGTAACGTCTGTTGTCTCGAAACAACAGCGGCGTTTCTTTTAATCTTATCTCTCTAATACCATATTTTACAGCCCCTAAAACATCTTGTTGACGGTACTCACCAGAACCTGTGTCCTCTTTTTTAAATCTTTTATTATTATAACTAGGTGAAGGTGGACTTGCTCTTACCCCATTCCCACTTTCTGACCTCTTCCTAGGGGCGGGATCCCACCTCAATAACGCATTCATTTTGCAGAACGCGCGCGGGCACAACCCCCAACAAGCTCCGCCCCCCTGTCTTCGTTCGTCGTTCTCGATCTCGATCCGACGACATCAGAATATTTATTCGTCAGCTATGCTCATCCGATCGCTTCTCGTTTTGGCGTGTCTTCTCGCCTGTGCACCGACGACGGTTAACTCATGGTGGTAAGTGTTTTGAGATATTATTAGGTTGCGTAGTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATRAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTACTACTCCCTCTTTCATATGTTCCCACAGTACCGCAGATTTCCTTCTGTCATAAAAGCCCCTGCTGTCGGTGAGAACCGAAAGGGTCCCATAGGCGATCGTAAAATTGCGCGCCGCCTAAAATTGTTTGGCAACATCACAGTAATCCCCCCGACGACAGCCGTTCTTCGGCACCACCAATAGGATTTTATGAGCTATAAAAATCGTAGACCTTGAACGAACCAAAATTACCTTTTCTAGGTTGCTTTCGAAAGCGGACACGTCGTCACCCACAACGTCCAACTCGCCGATTCTCTGCAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAATCAGCAAGGTTCAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTAGGAAAATTCGGCTAAATG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTAC</canonical_amplicon>
		<polymorphic_amplicon>GTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATRAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29550</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>45899</contig_pos>
        <strand></strand>
        <context>ccaaatttct[C/T]cttttttagt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCT</left_flank>
        <right_flank>CTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACCATATTTTACAGCCCCTAAAACATCTTGTTGACGGTACTCACCAGAACCTGTGTCCTCTTTTTTAAATCTTTTATTATTATAACTAGGTGAAGGTGGACTTGCTCTTACCCCATTCCCACTTTCTGACCTCTTCCTAGGGGCGGGATCCCACCTCAATAACGCATTCATTTTGCAGAACGCGCGCGGGCACAACCCCCAACAAGCTCCGCCCCCCTGTCTTCGTTCGTCGTTCTCGATCTCGATCCGACGACATCAGAATATTTATTCGTCAGCTATGCTCATCCGATCGCTTCTCGTTTTGGCGTGTCTTCTCGCCTGTGCACCGACGACGGTTAACTCATGGTGGTAAGTGTTTTGAGATATTATTAGGTTGCGTAGTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTACTACTCCCTCTTTCATATGTTCCCACAGTACCGCAGATTTCCTTCTGTCATAAAAGCCCCTGCTGTCGGTGAGAACCGAAAGGGTCCCATAGGCGATCGTAAAATTGCGCGCCGCCTAAAATTGTTTGGCAACATCACAGTAATCCCCCCGACGACAGCCGTTCTTCGGCACCACCAATAGGATTTTATGAGCTATAAAAATCGTAGACCTTGAACGAACCAAAATTACCTTTTCTAGGTTGCTTTCGAAAGCGGACACGTCGTCACCCACAACGTCCAACTCGCCGATTCTCTGCAAAAATGTTCCCGGATTGACGCCACAGCAGAAGCGAATGTGCCATGAGAATCCGAACATTATCAAGTACT</canonical>
            <polymorphic>TACCATATTTTACAGCCCCTAAAACATCTTGTTGACGGTACTCACCAGAACCTGTGTCCTCTTTTTTAAATCTTTTATTATTATAACTAGGTGAAGGTGGACTTGCTCTTACCCCATTCCCACTTTCTGACCTCTTCCTAGGGGCGGGATCCCACCTCAATAACGCATTCATTTTGCAGAACGCGCGCGGGCACAACCCCCAACAAGCTCCGCCCCCCTGTCTTCGTTCGTCGTTCTCGATCTCGATCCGACGACATCAGAATATTTATTCGTCAGCTATGCTCATCCGATCGCTTCTCGTTTTGGCGTGTCTTCTCGCCTGTGCACCGACGACGGTTAACTCATGGTGGTAAGTGTTTTGAGATATTATTAGGTTGCGTAGTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTYCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTACTACTCCCTCTTTCATATGTTCCCACAGTACCGCAGATTTCCTTCTGTCATAAAAGCCCCTGCTGTCGGTGAGAACCGAAAGGGTCCCATAGGCGATCGTAAAATTGCGCGCCGCCTAAAATTGTTTGGCAACATCACAGTAATCCCCCCGACGACAGCCGTTCTTCGGCACCACCAATAGGATTTTATGAGCTATAAAAATCGTAGACCTTGAACGAACCAAAATTACCTTTTCTAGGTTGCTTTCGAAAGCGGACACGTCGTCACCCACAACGTCCAACTCGCCGATTCTCTGCAAAAATGTTCCCGGATTGACGCCACAGCAGAAGCGAATGTGCCATGAGAATCCGAACATTATCAAGTACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAATCAGCAAGGTTCAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTAGGAAAATTCGGCTAAATG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTAC</canonical_amplicon>
		<polymorphic_amplicon>GTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTYCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29551</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>45918</contig_pos>
        <strand></strand>
        <context>gttgattttc[C/T]acctaaacgc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTC</left_flank>
        <right_flank>ACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAACATCTTGTTGACGGTACTCACCAGAACCTGTGTCCTCTTTTTTAAATCTTTTATTATTATAACTAGGTGAAGGTGGACTTGCTCTTACCCCATTCCCACTTTCTGACCTCTTCCTAGGGGCGGGATCCCACCTCAATAACGCATTCATTTTGCAGAACGCGCGCGGGCACAACCCCCAACAAGCTCCGCCCCCCTGTCTTCGTTCGTCGTTCTCGATCTCGATCCGACGACATCAGAATATTTATTCGTCAGCTATGCTCATCCGATCGCTTCTCGTTTTGGCGTGTCTTCTCGCCTGTGCACCGACGACGGTTAACTCATGGTGGTAAGTGTTTTGAGATATTATTAGGTTGCGTAGTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTACTACTCCCTCTTTCATATGTTCCCACAGTACCGCAGATTTCCTTCTGTCATAAAAGCCCCTGCTGTCGGTGAGAACCGAAAGGGTCCCATAGGCGATCGTAAAATTGCGCGCCGCCTAAAATTGTTTGGCAACATCACAGTAATCCCCCCGACGACAGCCGTTCTTCGGCACCACCAATAGGATTTTATGAGCTATAAAAATCGTAGACCTTGAACGAACCAAAATTACCTTTTCTAGGTTGCTTTCGAAAGCGGACACGTCGTCACCCACAACGTCCAACTCGCCGATTCTCTGCAAAAATGTTCCCGGATTGACGCCACAGCAGAAGCGAATGTGCCATGAGAATCCGAACATTATCAAGTACTTGGTAAGGATCACAAGCTA</canonical>
            <polymorphic>TAAAACATCTTGTTGACGGTACTCACCAGAACCTGTGTCCTCTTTTTTAAATCTTTTATTATTATAACTAGGTGAAGGTGGACTTGCTCTTACCCCATTCCCACTTTCTGACCTCTTCCTAGGGGCGGGATCCCACCTCAATAACGCATTCATTTTGCAGAACGCGCGCGGGCACAACCCCCAACAAGCTCCGCCCCCCTGTCTTCGTTCGTCGTTCTCGATCTCGATCCGACGACATCAGAATATTTATTCGTCAGCTATGCTCATCCGATCGCTTCTCGTTTTGGCGTGTCTTCTCGCCTGTGCACCGACGACGGTTAACTCATGGTGGTAAGTGTTTTGAGATATTATTAGGTTGCGTAGTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCYACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTACTACTCCCTCTTTCATATGTTCCCACAGTACCGCAGATTTCCTTCTGTCATAAAAGCCCCTGCTGTCGGTGAGAACCGAAAGGGTCCCATAGGCGATCGTAAAATTGCGCGCCGCCTAAAATTGTTTGGCAACATCACAGTAATCCCCCCGACGACAGCCGTTCTTCGGCACCACCAATAGGATTTTATGAGCTATAAAAATCGTAGACCTTGAACGAACCAAAATTACCTTTTCTAGGTTGCTTTCGAAAGCGGACACGTCGTCACCCACAACGTCCAACTCGCCGATTCTCTGCAAAAATGTTCCCGGATTGACGCCACAGCAGAAGCGAATGTGCCATGAGAATCCGAACATTATCAAGTACTTGGTAAGGATCACAAGCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>117 94 84 71 66 55 50 49 46 41 39 37 34 32 25 23 23 17 14 14 12 10 8 7 7 6 5 5 4 3 2</canonical_bands>
                <polymorphic_bands>126 117 94 84 66 50 49 46 41 39 37 34 32 25 23 23 17 14 14 12 10 8 7 7 6 5 5 4 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAATCAGCAAGGTTCAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTAGGAAAATTCGGCTAAATG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTAC</canonical_amplicon>
		<polymorphic_amplicon>GTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCYACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29552</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>45941</contig_pos>
        <strand></strand>
        <context>actttaaacg[G/A]ccgaaacctc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACG</left_flank>
        <right_flank>CCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCAC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACCAGAACCTGTGTCCTCTTTTTTAAATCTTTTATTATTATAACTAGGTGAAGGTGGACTTGCTCTTACCCCATTCCCACTTTCTGACCTCTTCCTAGGGGCGGGATCCCACCTCAATAACGCATTCATTTTGCAGAACGCGCGCGGGCACAACCCCCAACAAGCTCCGCCCCCCTGTCTTCGTTCGTCGTTCTCGATCTCGATCCGACGACATCAGAATATTTATTCGTCAGCTATGCTCATCCGATCGCTTCTCGTTTTGGCGTGTCTTCTCGCCTGTGCACCGACGACGGTTAACTCATGGTGGTAAGTGTTTTGAGATATTATTAGGTTGCGTAGTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTACTACTCCCTCTTTCATATGTTCCCACAGTACCGCAGATTTCCTTCTGTCATAAAAGCCCCTGCTGTCGGTGAGAACCGAAAGGGTCCCATAGGCGATCGTAAAATTGCGCGCCGCCTAAAATTGTTTGGCAACATCACAGTAATCCCCCCGACGACAGCCGTTCTTCGGCACCACCAATAGGATTTTATGAGCTATAAAAATCGTAGACCTTGAACGAACCAAAATTACCTTTTCTAGGTTGCTTTCGAAAGCGGACACGTCGTCACCCACAACGTCCAACTCGCCGATTCTCTGCAAAAATGTTCCCGGATTGACGCCACAGCAGAAGCGAATGTGCCATGAGAATCCGAACATTATCAAGTACTTGGTAAGGATCACAAGCTAGTTTTCATTTTCAAACAATTCAA</canonical>
            <polymorphic>CACCAGAACCTGTGTCCTCTTTTTTAAATCTTTTATTATTATAACTAGGTGAAGGTGGACTTGCTCTTACCCCATTCCCACTTTCTGACCTCTTCCTAGGGGCGGGATCCCACCTCAATAACGCATTCATTTTGCAGAACGCGCGCGGGCACAACCCCCAACAAGCTCCGCCCCCCTGTCTTCGTTCGTCGTTCTCGATCTCGATCCGACGACATCAGAATATTTATTCGTCAGCTATGCTCATCCGATCGCTTCTCGTTTTGGCGTGTCTTCTCGCCTGTGCACCGACGACGGTTAACTCATGGTGGTAAGTGTTTTGAGATATTATTAGGTTGCGTAGTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGRCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTACTACTCCCTCTTTCATATGTTCCCACAGTACCGCAGATTTCCTTCTGTCATAAAAGCCCCTGCTGTCGGTGAGAACCGAAAGGGTCCCATAGGCGATCGTAAAATTGCGCGCCGCCTAAAATTGTTTGGCAACATCACAGTAATCCCCCCGACGACAGCCGTTCTTCGGCACCACCAATAGGATTTTATGAGCTATAAAAATCGTAGACCTTGAACGAACCAAAATTACCTTTTCTAGGTTGCTTTCGAAAGCGGACACGTCGTCACCCACAACGTCCAACTCGCCGATTCTCTGCAAAAATGTTCCCGGATTGACGCCACAGCAGAAGCGAATGTGCCATGAGAATCCGAACATTATCAAGTACTTGGTAAGGATCACAAGCTAGTTTTCATTTTCAAACAATTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>311 252 249 188</canonical_bands>
                <polymorphic_bands>440 311 249</polymorphic_bands>
            </assay>
            <assay>
                <site>CGGCCG</site>
                <isoschizomers>
                    <enzyme>BseX3I</enzyme>
                    <enzyme>BstZI</enzyme>
                    <enzyme>EagI</enzyme>
                    <enzyme>EclXI</enzyme>
                    <enzyme>Eco52I</enzyme>
                    <enzyme>XmaIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 436 64</canonical_bands>
                <polymorphic_bands>564 436</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>190 165 145 102 79 69 69 64 47 34 26 10</canonical_bands>
                <polymorphic_bands>190 165 145 143 102 69 69 47 34 26 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAATCAGCAAGGTTCAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTAGGAAAATTCGGCTAAATG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTAC</canonical_amplicon>
		<polymorphic_amplicon>GTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGRCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29553</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>45955</contig_pos>
        <strand></strand>
        <context>aaacctctgc[T/C]acgtccccta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGC</left_flank>
        <right_flank>ACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACAC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTCTTTTTTAAATCTTTTATTATTATAACTAGGTGAAGGTGGACTTGCTCTTACCCCATTCCCACTTTCTGACCTCTTCCTAGGGGCGGGATCCCACCTCAATAACGCATTCATTTTGCAGAACGCGCGCGGGCACAACCCCCAACAAGCTCCGCCCCCCTGTCTTCGTTCGTCGTTCTCGATCTCGATCCGACGACATCAGAATATTTATTCGTCAGCTATGCTCATCCGATCGCTTCTCGTTTTGGCGTGTCTTCTCGCCTGTGCACCGACGACGGTTAACTCATGGTGGTAAGTGTTTTGAGATATTATTAGGTTGCGTAGTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTACTACTCCCTCTTTCATATGTTCCCACAGTACCGCAGATTTCCTTCTGTCATAAAAGCCCCTGCTGTCGGTGAGAACCGAAAGGGTCCCATAGGCGATCGTAAAATTGCGCGCCGCCTAAAATTGTTTGGCAACATCACAGTAATCCCCCCGACGACAGCCGTTCTTCGGCACCACCAATAGGATTTTATGAGCTATAAAAATCGTAGACCTTGAACGAACCAAAATTACCTTTTCTAGGTTGCTTTCGAAAGCGGACACGTCGTCACCCACAACGTCCAACTCGCCGATTCTCTGCAAAAATGTTCCCGGATTGACGCCACAGCAGAAGCGAATGTGCCATGAGAATCCGAACATTATCAAGTACTTGGTAAGGATCACAAGCTAGTTTTCATTTTCAAACAATTCAATTTCTAGATCTCCG</canonical>
            <polymorphic>TCCTCTTTTTTAAATCTTTTATTATTATAACTAGGTGAAGGTGGACTTGCTCTTACCCCATTCCCACTTTCTGACCTCTTCCTAGGGGCGGGATCCCACCTCAATAACGCATTCATTTTGCAGAACGCGCGCGGGCACAACCCCCAACAAGCTCCGCCCCCCTGTCTTCGTTCGTCGTTCTCGATCTCGATCCGACGACATCAGAATATTTATTCGTCAGCTATGCTCATCCGATCGCTTCTCGTTTTGGCGTGTCTTCTCGCCTGTGCACCGACGACGGTTAACTCATGGTGGTAAGTGTTTTGAGATATTATTAGGTTGCGTAGTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCYACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTACTACTCCCTCTTTCATATGTTCCCACAGTACCGCAGATTTCCTTCTGTCATAAAAGCCCCTGCTGTCGGTGAGAACCGAAAGGGTCCCATAGGCGATCGTAAAATTGCGCGCCGCCTAAAATTGTTTGGCAACATCACAGTAATCCCCCCGACGACAGCCGTTCTTCGGCACCACCAATAGGATTTTATGAGCTATAAAAATCGTAGACCTTGAACGAACCAAAATTACCTTTTCTAGGTTGCTTTCGAAAGCGGACACGTCGTCACCCACAACGTCCAACTCGCCGATTCTCTGCAAAAATGTTCCCGGATTGACGCCACAGCAGAAGCGAATGTGCCATGAGAATCCGAACATTATCAAGTACTTGGTAAGGATCACAAGCTAGTTTTCATTTTCAAACAATTCAATTTCTAGATCTCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAATCAGCAAGGTTCAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTAGGAAAATTCGGCTAAATG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTAC</canonical_amplicon>
		<polymorphic_amplicon>GTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCYACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29554</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>46036</contig_pos>
        <strand></strand>
        <context>TTTTCCTACT[A/T]CTCCCTCTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTACT</left_flank>
        <right_flank>CTCCCTCTTTCATATGTTCCCACAGTACCGCAGATTTCCTTCTGTCATAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGGGGCGGGATCCCACCTCAATAACGCATTCATTTTGCAGAACGCGCGCGGGCACAACCCCCAACAAGCTCCGCCCCCCTGTCTTCGTTCGTCGTTCTCGATCTCGATCCGACGACATCAGAATATTTATTCGTCAGCTATGCTCATCCGATCGCTTCTCGTTTTGGCGTGTCTTCTCGCCTGTGCACCGACGACGGTTAACTCATGGTGGTAAGTGTTTTGAGATATTATTAGGTTGCGTAGTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTACTACTCCCTCTTTCATATGTTCCCACAGTACCGCAGATTTCCTTCTGTCATAAAAGCCCCTGCTGTCGGTGAGAACCGAAAGGGTCCCATAGGCGATCGTAAAATTGCGCGCCGCCTAAAATTGTTTGGCAACATCACAGTAATCCCCCCGACGACAGCCGTTCTTCGGCACCACCAATAGGATTTTATGAGCTATAAAAATCGTAGACCTTGAACGAACCAAAATTACCTTTTCTAGGTTGCTTTCGAAAGCGGACACGTCGTCACCCACAACGTCCAACTCGCCGATTCTCTGCAAAAATGTTCCCGGATTGACGCCACAGCAGAAGCGAATGTGCCATGAGAATCCGAACATTATCAAGTACTTGGTAAGGATCACAAGCTAGTTTTCATTTTCAAACAATTCAATTTCTAGATCTCCGGACTTCGAAGCGCACTGCACACCTGCGAGTACACGTTCCAGCGAGAAGCATGGAACTGCACACTCACACTCCCAGGTGTCG</canonical>
            <polymorphic>CTAGGGGCGGGATCCCACCTCAATAACGCATTCATTTTGCAGAACGCGCGCGGGCACAACCCCCAACAAGCTCCGCCCCCCTGTCTTCGTTCGTCGTTCTCGATCTCGATCCGACGACATCAGAATATTTATTCGTCAGCTATGCTCATCCGATCGCTTCTCGTTTTGGCGTGTCTTCTCGCCTGTGCACCGACGACGGTTAACTCATGGTGGTAAGTGTTTTGAGATATTATTAGGTTGCGTAGTAATCAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTACTWCTCCCTCTTTCATATGTTCCCACAGTACCGCAGATTTCCTTCTGTCATAAAAGCCCCTGCTGTCGGTGAGAACCGAAAGGGTCCCATAGGCGATCGTAAAATTGCGCGCCGCCTAAAATTGTTTGGCAACATCACAGTAATCCCCCCGACGACAGCCGTTCTTCGGCACCACCAATAGGATTTTATGAGCTATAAAAATCGTAGACCTTGAACGAACCAAAATTACCTTTTCTAGGTTGCTTTCGAAAGCGGACACGTCGTCACCCACAACGTCCAACTCGCCGATTCTCTGCAAAAATGTTCCCGGATTGACGCCACAGCAGAAGCGAATGTGCCATGAGAATCCGAACATTATCAAGTACTTGGTAAGGATCACAAGCTAGTTTTCATTTTCAAACAATTCAATTTCTAGATCTCCGGACTTCGAAGCGCACTGCACACCTGCGAGTACACGTTCCAGCGAGAAGCATGGAACTGCACACTCACACTCCCAGGTGTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCAAGGTTCAAAAATGTC</pcr_primer_p1>
		<pcr_primer_p2>GCTTTTATGACAGAAGGAAATCT</pcr_primer_p2>
		<pcr_amplicon_size>305</pcr_amplicon_size>
		<canonical_amplicon>CAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTACTACTCCCTCTTTCATATGTTCCCACAGTACCGCAGATTTCCTTCTGTCATAAAAGC</canonical_amplicon>
		<polymorphic_amplicon>CAGCAAGGTTCAAAAATGTCTGTAACCTTCATAGGCTTCGTACAGCTATGAGCATGCTGCTGTGCTGTAATGTGACGTGGCAAAATTCTAGGCCGTTAGAAATCCAAATTTCTCCTTTTTTAGTTGATTTTCCACCTAAACGCTGACTTTAAACGGCCGAAACCTCTGCTACGTCCCCTACTCATTGAAGCGCAACCGCCTACCACAGCAATTCGAACACTGTGCTTGCATTTAGCCGAATTTTCCTACTWCTCCCTCTTTCATATGTTCCCACAGTACCGCAGATTTCCTTCTGTCATAAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29555</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>52453</contig_pos>
        <strand>+</strand>
        <context>TGGAGTGATA[A/G]GAGTGATAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAAAGAGATGATTTGCATAGCGCTTTGTGGAGTGTTGAGTGGAGTGATA</left_flank>
        <right_flank>GAGTGATAAAGAGTGTTTTCGAAGTTCATGAACATTTTGGCACCTGTCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCCGTATGTAGCATTTATCTGTTTTTTGGTATTTTCAGCGGATTTGACTGGGCCAGGAGAACGGAGCTCAATAACTAAGAAAATGGTGAGAACGATCATGATGAAAATTGGAATAATCTGAAAGTAAGGTTTATTTTTCATTCTATTAAAATGTTCGAAGAGTTATATTTTCTTAACAATTGCGAAAAAGTTCCGAAAAATCCGAAATGCCCGATAAACGCTGCTTAGAAAACCTTGCTGAAAAAAGGTTGTAGGGACAAACCGCTCTCAAAAACTTTGACCTGTGAGAGCACCACTTACCGATATCCAAGTACATCTGAAACATTTCCAGACAATATCGAGGTCCTACAATGATAATAGTTCTGATCATAACCACTTTATATTTTTCTTTTCAACATTTTCCATTTGACTATTCTAACGAGGCCAGCAATGCGAACACAATCCGTATCCAAAGAGATGATTTGCATAGCGCTTTGTGGAGTGTTGAGTGGAGTGATAAGAGTGATAAAGAGTGTTTTCGAAGTTCATGAACATTTTGGCACCTGTCATCATTCGTATCGCTACTATGTTGTAGGGGTTAGCACGGTACATGTAAGACTATGATAGTTCAACTTCATTCCAGCTAATTTATTTCCTCGCCTACCAAATTATCAATCAATTCATTCTATGGCTAATTATCTACATCACCTTCTTGAGAGCTATGGTAATCTTGGAGGTCAAGCGTGGACTGTATGTTTCAACTACCGTGTTTTCTGTAATAGCCACCCTGGAGATGCACTTTGAGCTCAATCATCTCGGTTCCCATAAAATATATCAAAAATTTGTCAACTGTCAAAGTATCGGTGATATTATGATTAACAACTTATCAGTTTACAATTTCTTGAAATCTGTGACAGTAATCGAGATAATTGAGCTCCAAGTGCCTATAGGGTATTACAAAAAAATACGGTCATCCGAGTAACAGAAAATTTAAATTTCCAGGTCCCCACCCGGATCAAA</canonical>
            <polymorphic>GGCCGTATGTAGCATTTATCTGTTTTTTGGTATTTTCAGCGGATTTGACTGGGCCAGGAGAACGGAGCTCAATAACTAAGAAAATGGTGAGAACGATCATGATGAAAATTGGAATAATCTGAAAGTAAGGTTTATTTTTCATTCTATTAAAATGTTCGAAGAGTTATATTTTCTTAACAATTGCGAAAAAGTTCCGAAAAATCCGAAATGCCCGATAAACGCTGCTTAGAAAACCTTGCTGAAAAAAGGTTGTAGGGACAAACCGCTCTCAAAAACTTTGACCTGTGAGAGCACCACTTACCGATATCCAAGTACATCTGAAACATTTCCAGACAATATCGAGGTCCTACAATGATAATAGTTCTGATCATAACCACTTTATATTTTTCTTTTCAACATTTTCCATTTGACTATTCTAACGAGGCCAGCAATGCGAACACAATCCGTATCCAAAGAGATGATTTGCATAGCGCTTTGTGGAGTGTTGAGTGGAGTGATARGAGTGATAAAGAGTGTTTTCGAAGTTCATGAACATTTTGGCACCTGTCATCATTCGTATCGCTACTATGTTGTAGGGGTTAGCACGGTACATGTAAGACTATGATAGTTCAACTTCATTCCAGCTAATTTATTTCCTCGCCTACCAAATTATCAATCAATTCATTCTATGGCTAATTATCTACATCACCTTCTTGAGAGCTATGGTAATCTTGGAGGTCAAGCGTGGACTGTATGTTTCAACTACCGTGTTTTCTGTAATAGCCACCCTGGAGATGCACTTTGAGCTCAATCATCTCGGTTCCCATAAAATATATCAAAAATTTGTCAACTGTCAAAGTATCGGTGATATTATGATTAACAACTTATCAGTTTACAATTTCTTGAAATCTGTGACAGTAATCGAGATAATTGAGCTCCAAGTGCCTATAGGGTATTACAAAAAAATACGGTCATCCGAGTAACAGAAAATTTAAATTTCCAGGTCCCCACCCGGATCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAAACATTTCCAGACAATATC</pcr_primer_p1>
		<pcr_primer_p2>ATAGTAGCGATACGAATGATGAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTGAAACATTTCCAGACAATATCGAGGTCCTACAATGATAATAGTTCTGATCATAACCACTTTATATTTTTCTTTTCAACATTTTCCATTTGACTATTCTAACGAGGCCAGCAATGCGAACACAATCCGTATCCAAAGAGATGATTTGCATAGCGCTTTGTGGAGTGTTGAGTGGAGTGATAAGAGTGATAAAGAGTGTTTTCGAAGTTCATGAACATTTTGGCACCTGTCATCATTCGTATCGCTACTAT</canonical_amplicon>
		<polymorphic_amplicon>CTGAAACATTTCCAGACAATATCGAGGTCCTACAATGATAATAGTTCTGATCATAACCACTTTATATTTTTCTTTTCAACATTTTCCATTTGACTATTCTAACGAGGCCAGCAATGCGAACACAATCCGTATCCAAAGAGATGATTTGCATAGCGCTTTGTGGAGTGTTGAGTGGAGTGATARGAGTGATAAAGAGTGTTTTCGAAGTTCATGAACATTTTGGCACCTGTCATCATTCGTATCGCTACTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29556</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>52536</contig_pos>
        <strand>+</strand>
        <context>TAGGGGTTAG[C/T]ACGGTACATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATTTTGGCACCTGTCATCATTCGTATCGCTACTATGTTGTAGGGGTTAG</left_flank>
        <right_flank>ACGGTACATGTAAGACTATGATAGTTCAACTTCATTCCAGCTAATTTATT</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGTGAGAACGATCATGATGAAAATTGGAATAATCTGAAAGTAAGGTTTATTTTTCATTCTATTAAAATGTTCGAAGAGTTATATTTTCTTAACAATTGCGAAAAAGTTCCGAAAAATCCGAAATGCCCGATAAACGCTGCTTAGAAAACCTTGCTGAAAAAAGGTTGTAGGGACAAACCGCTCTCAAAAACTTTGACCTGTGAGAGCACCACTTACCGATATCCAAGTACATCTGAAACATTTCCAGACAATATCGAGGTCCTACAATGATAATAGTTCTGATCATAACCACTTTATATTTTTCTTTTCAACATTTTCCATTTGACTATTCTAACGAGGCCAGCAATGCGAACACAATCCGTATCCAAAGAGATGATTTGCATAGCGCTTTGTGGAGTGTTGAGTGGAGTGATAAGAGTGATAAAGAGTGTTTTCGAAGTTCATGAACATTTTGGCACCTGTCATCATTCGTATCGCTACTATGTTGTAGGGGTTAGCACGGTACATGTAAGACTATGATAGTTCAACTTCATTCCAGCTAATTTATTTCCTCGCCTACCAAATTATCAATCAATTCATTCTATGGCTAATTATCTACATCACCTTCTTGAGAGCTATGGTAATCTTGGAGGTCAAGCGTGGACTGTATGTTTCAACTACCGTGTTTTCTGTAATAGCCACCCTGGAGATGCACTTTGAGCTCAATCATCTCGGTTCCCATAAAATATATCAAAAATTTGTCAACTGTCAAAGTATCGGTGATATTATGATTAACAACTTATCAGTTTACAATTTCTTGAAATCTGTGACAGTAATCGAGATAATTGAGCTCCAAGTGCCTATAGGGTATTACAAAAAAATACGGTCATCCGAGTAACAGAAAATTTAAATTTCCAGGTCCCCACCCGGATCAAAAATGTTGAAAATCTTCATGATATCTTTTATTTGTTTAATGACGGCCATTTTTTTCTTCAATCACCTGCTAAGAGTATCATACC</canonical>
            <polymorphic>ATGGTGAGAACGATCATGATGAAAATTGGAATAATCTGAAAGTAAGGTTTATTTTTCATTCTATTAAAATGTTCGAAGAGTTATATTTTCTTAACAATTGCGAAAAAGTTCCGAAAAATCCGAAATGCCCGATAAACGCTGCTTAGAAAACCTTGCTGAAAAAAGGTTGTAGGGACAAACCGCTCTCAAAAACTTTGACCTGTGAGAGCACCACTTACCGATATCCAAGTACATCTGAAACATTTCCAGACAATATCGAGGTCCTACAATGATAATAGTTCTGATCATAACCACTTTATATTTTTCTTTTCAACATTTTCCATTTGACTATTCTAACGAGGCCAGCAATGCGAACACAATCCGTATCCAAAGAGATGATTTGCATAGCGCTTTGTGGAGTGTTGAGTGGAGTGATAAGAGTGATAAAGAGTGTTTTCGAAGTTCATGAACATTTTGGCACCTGTCATCATTCGTATCGCTACTATGTTGTAGGGGTTAGYACGGTACATGTAAGACTATGATAGTTCAACTTCATTCCAGCTAATTTATTTCCTCGCCTACCAAATTATCAATCAATTCATTCTATGGCTAATTATCTACATCACCTTCTTGAGAGCTATGGTAATCTTGGAGGTCAAGCGTGGACTGTATGTTTCAACTACCGTGTTTTCTGTAATAGCCACCCTGGAGATGCACTTTGAGCTCAATCATCTCGGTTCCCATAAAATATATCAAAAATTTGTCAACTGTCAAAGTATCGGTGATATTATGATTAACAACTTATCAGTTTACAATTTCTTGAAATCTGTGACAGTAATCGAGATAATTGAGCTCCAAGTGCCTATAGGGTATTACAAAAAAATACGGTCATCCGAGTAACAGAAAATTTAAATTTCCAGGTCCCCACCCGGATCAAAAATGTTGAAAATCTTCATGATATCTTTTATTTGTTTAATGACGGCCATTTTTTTCTTCAATCACCTGCTAAGAGTATCATACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>198 103 80 74 68 66 63 47 42 40 39 30 27 23 20 16 13 10 9 7 6 6 5 5 3</canonical_bands>
                <polymorphic_bands>198 145 80 74 68 66 63 47 40 39 30 27 23 20 16 13 10 9 7 6 6 5 5 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATAAAGAGTGTTTTCGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>GGTAGTTGAAACATACAGTCCAC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TGATAAAGAGTGTTTTCGAAGTTCATGAACATTTTGGCACCTGTCATCATTCGTATCGCTACTATGTTGTAGGGGTTAGCACGGTACATGTAAGACTATGATAGTTCAACTTCATTCCAGCTAATTTATTTCCTCGCCTACCAAATTATCAATCAATTCATTCTATGGCTAATTATCTACATCACCTTCTTGAGAGCTATGGTAATCTTGGAGGTCAAGCGTGGACTGTATGTTTCAACTACC</canonical_amplicon>
		<polymorphic_amplicon>TGATAAAGAGTGTTTTCGAAGTTCATGAACATTTTGGCACCTGTCATCATTCGTATCGCTACTATGTTGTAGGGGTTAGYACGGTACATGTAAGACTATGATAGTTCAACTTCATTCCAGCTAATTTATTTCCTCGCCTACCAAATTATCAATCAATTCATTCTATGGCTAATTATCTACATCACCTTCTTGAGAGCTATGGTAATCTTGGAGGTCAAGCGTGGACTGTATGTTTCAACTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29557</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>53571</contig_pos>
        <strand></strand>
        <context>TCGGGCATTT[C/G]GGATTTTTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTACAACCTTTTTTCAGCAAGGTTTTCTAAGCAGCGTTTATCGGGCATTT</left_flank>
        <right_flank>GGATTTTTCGGAACTTTTTCGCAATTGTTAAGAAAATATAACTCTTCGAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGAGTTGATAAAGGAAAAGAGGTGGGTTCTTATAGTCAGACGAATTCGAAAAATTGAACAATTCAATGTTTCAGATGTAAATACCAAAAAGTGTACAATATTGAAGCGTTTTCTGGAGACTGTCTGAGACGGATATTATTGTCAATTGCCGGTGTGACAGGTTTTGTGAGTTCGGTTTAATCAACAAAAAGTTTTTATTGAATTTAATTTTTTTAAATCTGAAAGCCCCAAAAACGCGACCGAAAATATAGAAAGGCTGCAAAGAGGGACGAGGATTCGAATTACCGGGCAATGAGAAACCTAGGCTAGAAACCGCAGTGAGAAGCCTTTTTCATATAGAAAACTTTCCGGATTGTTTCAGCTGTTATCTCGTCCGCCACCTGATAGGAAGCCCGCCTGCTACCGTTGCCTAAATTTCTCATTGCGCGGGAATTCAAACCCTCGTCCCTACAACCTTTTTTCAGCAAGGTTTTCTAAGCAGCGTTTATCGGGCATTTCGGATTTTTCGGAACTTTTTCGCAATTGTTAAGAAAATATAACTCTTCGAACATTTTAATAGAATGAAAAATAAACCTTACTTTCAGATTATTCCAATTTTCATCATGATCGTTCTCACCATTTTCTTAGTTATTGAGCTCCGTTCTCCTGGCCCAGTCAAATCCGCTGAAAATACCAAAAAACAGATAAATGCTACATACGGCCTTGTTGCCTTTCTCTTCTGCTACATCTTCGCAGAACTTCCATACGTTTTCCTTTTTGCTCTTGGTCTTATAAATCCATCAGATTTCGTGTAAGTTCTGTGAAACCTGTAATAGAAGGACCTGACAACTTTGGCTCAAAGTTGTTGAAGGATCTACTAATCAATAACAATTTCAGACAACTAGACGAATACATCTACAGTCAAGTTGACGCCTTCATATGCTCATCTATGTGTATTGGAATCATTATATACGCTATGATGTCTGCTCAATACAGAGACACAATTTGTGCAACATTCT</canonical>
            <polymorphic>GAAGAGTTGATAAAGGAAAAGAGGTGGGTTCTTATAGTCAGACGAATTCGAAAAATTGAACAATTCAATGTTTCAGATGTAAATACCAAAAAGTGTACAATATTGAAGCGTTTTCTGGAGACTGTCTGAGACGGATATTATTGTCAATTGCCGGTGTGACAGGTTTTGTGAGTTCGGTTTAATCAACAAAAAGTTTTTATTGAATTTAATTTTTTTAAATCTGAAAGCCCCAAAAACGCGACCGAAAATATAGAAAGGCTGCAAAGAGGGACGAGGATTCGAATTACCGGGCAATGAGAAACCTAGGCTAGAAACCGCAGTGAGAAGCCTTTTTCATATAGAAAACTTTCCGGATTGTTTCAGCTGTTATCTCGTCCGCCACCTGATAGGAAGCCCGCCTGCTACCGTTGCCTAAATTTCTCATTGCGCGGGAATTCAAACCCTCGTCCCTACAACCTTTTTTCAGCAAGGTTTTCTAAGCAGCGTTTATCGGGCATTTSGGATTTTTCGGAACTTTTTCGCAATTGTTAAGAAAATATAACTCTTCGAACATTTTAATAGAATGAAAAATAAACCTTACTTTCAGATTATTCCAATTTTCATCATGATCGTTCTCACCATTTTCTTAGTTATTGAGCTCCGTTCTCCTGGCCCAGTCAAATCCGCTGAAAATACCAAAAAACAGATAAATGCTACATACGGCCTTGTTGCCTTTCTCTTCTGCTACATCTTCGCAGAACTTCCATACGTTTTCCTTTTTGCTCTTGGTCTTATAAATCCATCAGATTTCGTGTAAGTTCTGTGAAACCTGTAATAGAAGGACCTGACAACTTTGGCTCAAAGTTGTTGAAGGATCTACTAATCAATAACAATTTCAGACAACTAGACGAATACATCTACAGTCAAGTTGACGCCTTCATATGCTCATCTATGTGTATTGGAATCATTATATACGCTATGATGTCTGCTCAATACAGAGACACAATTTGTGCAACATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>279 199 123 95 93 75 52 40 35 9</canonical_bands>
                <polymorphic_bands>288 199 123 95 93 75 52 40 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTGTTTCAGCTGTTATCTC</pcr_primer_p1>
		<pcr_primer_p2>AATTGGAATAATCTGAAAGTAAGG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGATTGTTTCAGCTGTTATCTCGTCCGCCACCTGATAGGAAGCCCGCCTGCTACCGTTGCCTAAATTTCTCATTGCGCGGGAATTCAAACCCTCGTCCCTACAACCTTTTTTCAGCAAGGTTTTCTAAGCAGCGTTTATCGGGCATTTCGGATTTTTCGGAACTTTTTCGCAATTGTTAAGAAAATATAACTCTTCGAACATTTTAATAGAATGAAAAATAAACCTTACTTTCAGATTATTCCAATT</canonical_amplicon>
		<polymorphic_amplicon>GGATTGTTTCAGCTGTTATCTCGTCCGCCACCTGATAGGAAGCCCGCCTGCTACCGTTGCCTAAATTTCTCATTGCGCGGGAATTCAAACCCTCGTCCCTACAACCTTTTTTCAGCAAGGTTTTCTAAGCAGCGTTTATCGGGCATTTSGGATTTTTCGGAACTTTTTCGCAATTGTTAAGAAAATATAACTCTTCGAACATTTTAATAGAATGAAAAATAAACCTTACTTTCAGATTATTCCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29558</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>69052</contig_pos>
        <strand></strand>
        <context>tcttttagga[T/C]aaatatttct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATGTGCCTTAAACGGGACCTGGCGGAACCTGTCATTGATTCTTTTAGGA</left_flank>
        <right_flank>AAATATTTCTGGACTAATTAAATAAGATATTATAGAACTCGACAAGTACT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGAGAGAAAAATAAATCCAGAAATTCCCAAAAAAAATTGCAGGAGCCGGAGAATGTGGAAAGTCGACAGTTCTGAAACAAATGAGGCTTCTCACTTCGAAGACGTACACGGCAGACGAGCTGGAAGCGCAGGCCAAGGTATGAGAACCACGTGGATGCCTGAAAATCTGAAAAATATGAACATTTTCAGCTGGTCTTTACCAACATTGTCATTGAAATGGATCATATCGTCAAAGCAATGCCATCTGCACATTTCAATTTCACGGATCCCATGAGAGAGGTGAGATTTTTAGCATTTTGGTCTTCTGCACAATTTTTGCACTTTTGTTTTTAGTCATGTCTAGGGAAAAGTATTTTTGCTCTTGATTATGTGATCTGTCACAGTTGGATTTCTGTGTTTAAATTTGAATTTTTGAAGGATGACTACTATTTGATTGCATACTTGAAGAATGTGCCTTAAACGGGACCTGGCGGAACCTGTCATTGATTCTTTTAGGATAAATATTTCTGGACTAATTAAATAAGATATTATAGAACTCGACAAGTACTACAAAATGATACTATTTAGAATACTGTATCTTGTCTATGAATCAAGCCAAAACCGTTTGATCTACGGTGTCACAAACATATGGAATTGTAACTTTGTTCATAGACAAGATACAGCAATCCAAATAGTATCATTTGTAGTACTCGTCGAGTTCTATCATATCTAATGTAATCGATCCAAAATATCAATTCTAAAAGAAACTATAACAGAGCCGGAGAGAGCTCGTTTTCGGCCAAGTCTGCCCCTATTAGATTGAACCTCCAACCTTCAAATTTTCAGCACGACGTTCACATGCTGACCCTCTACATCAAGGACATGCAGCACAAGTCCTTCCATGCAGATGCTGCAGAACACGTGGCAAAACTTTGGAAGGATCCAGTCATCAAGAGACTCTACGCTGAACGACGCGAGCGCAATATCAGAGATATTGGAGACAACACTGAATAGTAAGA</canonical>
            <polymorphic>AGAGAGAGAAAAATAAATCCAGAAATTCCCAAAAAAAATTGCAGGAGCCGGAGAATGTGGAAAGTCGACAGTTCTGAAACAAATGAGGCTTCTCACTTCGAAGACGTACACGGCAGACGAGCTGGAAGCGCAGGCCAAGGTATGAGAACCACGTGGATGCCTGAAAATCTGAAAAATATGAACATTTTCAGCTGGTCTTTACCAACATTGTCATTGAAATGGATCATATCGTCAAAGCAATGCCATCTGCACATTTCAATTTCACGGATCCCATGAGAGAGGTGAGATTTTTAGCATTTTGGTCTTCTGCACAATTTTTGCACTTTTGTTTTTAGTCATGTCTAGGGAAAAGTATTTTTGCTCTTGATTATGTGATCTGTCACAGTTGGATTTCTGTGTTTAAATTTGAATTTTTGAAGGATGACTACTATTTGATTGCATACTTGAAGAATGTGCCTTAAACGGGACCTGGCGGAACCTGTCATTGATTCTTTTAGGAYAAATATTTCTGGACTAATTAAATAAGATATTATAGAACTCGACAAGTACTACAAAATGATACTATTTAGAATACTGTATCTTGTCTATGAATCAAGCCAAAACCGTTTGATCTACGGTGTCACAAACATATGGAATTGTAACTTTGTTCATAGACAAGATACAGCAATCCAAATAGTATCATTTGTAGTACTCGTCGAGTTCTATCATATCTAATGTAATCGATCCAAAATATCAATTCTAAAAGAAACTATAACAGAGCCGGAGAGAGCTCGTTTTCGGCCAAGTCTGCCCCTATTAGATTGAACCTCCAACCTTCAAATTTTCAGCACGACGTTCACATGCTGACCCTCTACATCAAGGACATGCAGCACAAGTCCTTCCATGCAGATGCTGCAGAACACGTGGCAAAACTTTGGAAGGATCCAGTCATCAAGAGACTCTACGCTGAACGACGCGAGCGCAATATCAGAGATATTGGAGACAACACTGAATAGTAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTTGAAGAATGTGCCTTAAAC</pcr_primer_p1>
		<pcr_primer_p2>AATCTAATAGGGGCAGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>362</pcr_amplicon_size>
		<canonical_amplicon>TACTTGAAGAATGTGCCTTAAACGGGACCTGGCGGAACCTGTCATTGATTCTTTTAGGATAAATATTTCTGGACTAATTAAATAAGATATTATAGAACTCGACAAGTACTACAAAATGATACTATTTAGAATACTGTATCTTGTCTATGAATCAAGCCAAAACCGTTTGATCTACGGTGTCACAAACATATGGAATTGTAACTTTGTTCATAGACAAGATACAGCAATCCAAATAGTATCATTTGTAGTACTCGTCGAGTTCTATCATATCTAATGTAATCGATCCAAAATATCAATTCTAAAAGAAACTATAACAGAGCCGGAGAGAGCTCGTTTTCGGCCAAGTCTGCCCCTATTAGATT</canonical_amplicon>
		<polymorphic_amplicon>TACTTGAAGAATGTGCCTTAAACGGGACCTGGCGGAACCTGTCATTGATTCTTTTAGGAYAAATATTTCTGGACTAATTAAATAAGATATTATAGAACTCGACAAGTACTACAAAATGATACTATTTAGAATACTGTATCTTGTCTATGAATCAAGCCAAAACCGTTTGATCTACGGTGTCACAAACATATGGAATTGTAACTTTGTTCATAGACAAGATACAGCAATCCAAATAGTATCATTTGTAGTACTCGTCGAGTTCTATCATATCTAATGTAATCGATCCAAAATATCAATTCTAAAAGAAACTATAACAGAGCCGGAGAGAGCTCGTTTTCGGCCAAGTCTGCCCCTATTAGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29559</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>69076</contig_pos>
        <strand></strand>
        <context>ctaattaaat[A/C]agatattata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGAACCTGTCATTGATTCTTTTAGGATAAATATTTCTGGACTAATTAAAT</left_flank>
        <right_flank>AGATATTATAGAACTCGACAAGTACTACAAAATGATACTATTTAGAATAC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCCCAAAAAAAATTGCAGGAGCCGGAGAATGTGGAAAGTCGACAGTTCTGAAACAAATGAGGCTTCTCACTTCGAAGACGTACACGGCAGACGAGCTGGAAGCGCAGGCCAAGGTATGAGAACCACGTGGATGCCTGAAAATCTGAAAAATATGAACATTTTCAGCTGGTCTTTACCAACATTGTCATTGAAATGGATCATATCGTCAAAGCAATGCCATCTGCACATTTCAATTTCACGGATCCCATGAGAGAGGTGAGATTTTTAGCATTTTGGTCTTCTGCACAATTTTTGCACTTTTGTTTTTAGTCATGTCTAGGGAAAAGTATTTTTGCTCTTGATTATGTGATCTGTCACAGTTGGATTTCTGTGTTTAAATTTGAATTTTTGAAGGATGACTACTATTTGATTGCATACTTGAAGAATGTGCCTTAAACGGGACCTGGCGGAACCTGTCATTGATTCTTTTAGGATAAATATTTCTGGACTAATTAAATAAGATATTATAGAACTCGACAAGTACTACAAAATGATACTATTTAGAATACTGTATCTTGTCTATGAATCAAGCCAAAACCGTTTGATCTACGGTGTCACAAACATATGGAATTGTAACTTTGTTCATAGACAAGATACAGCAATCCAAATAGTATCATTTGTAGTACTCGTCGAGTTCTATCATATCTAATGTAATCGATCCAAAATATCAATTCTAAAAGAAACTATAACAGAGCCGGAGAGAGCTCGTTTTCGGCCAAGTCTGCCCCTATTAGATTGAACCTCCAACCTTCAAATTTTCAGCACGACGTTCACATGCTGACCCTCTACATCAAGGACATGCAGCACAAGTCCTTCCATGCAGATGCTGCAGAACACGTGGCAAAACTTTGGAAGGATCCAGTCATCAAGAGACTCTACGCTGAACGACGCGAGCGCAATATCAGAGATATTGGAGACAACACTGAATAGTAAGATATTGATTTTTAAAACTTCTCCTC</canonical>
            <polymorphic>ATTCCCAAAAAAAATTGCAGGAGCCGGAGAATGTGGAAAGTCGACAGTTCTGAAACAAATGAGGCTTCTCACTTCGAAGACGTACACGGCAGACGAGCTGGAAGCGCAGGCCAAGGTATGAGAACCACGTGGATGCCTGAAAATCTGAAAAATATGAACATTTTCAGCTGGTCTTTACCAACATTGTCATTGAAATGGATCATATCGTCAAAGCAATGCCATCTGCACATTTCAATTTCACGGATCCCATGAGAGAGGTGAGATTTTTAGCATTTTGGTCTTCTGCACAATTTTTGCACTTTTGTTTTTAGTCATGTCTAGGGAAAAGTATTTTTGCTCTTGATTATGTGATCTGTCACAGTTGGATTTCTGTGTTTAAATTTGAATTTTTGAAGGATGACTACTATTTGATTGCATACTTGAAGAATGTGCCTTAAACGGGACCTGGCGGAACCTGTCATTGATTCTTTTAGGATAAATATTTCTGGACTAATTAAATMAGATATTATAGAACTCGACAAGTACTACAAAATGATACTATTTAGAATACTGTATCTTGTCTATGAATCAAGCCAAAACCGTTTGATCTACGGTGTCACAAACATATGGAATTGTAACTTTGTTCATAGACAAGATACAGCAATCCAAATAGTATCATTTGTAGTACTCGTCGAGTTCTATCATATCTAATGTAATCGATCCAAAATATCAATTCTAAAAGAAACTATAACAGAGCCGGAGAGAGCTCGTTTTCGGCCAAGTCTGCCCCTATTAGATTGAACCTCCAACCTTCAAATTTTCAGCACGACGTTCACATGCTGACCCTCTACATCAAGGACATGCAGCACAAGTCCTTCCATGCAGATGCTGCAGAACACGTGGCAAAACTTTGGAAGGATCCAGTCATCAAGAGACTCTACGCTGAACGACGCGAGCGCAATATCAGAGATATTGGAGACAACACTGAATAGTAAGATATTGATTTTTAAAACTTCTCCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTTGAAGAATGTGCCTTAAAC</pcr_primer_p1>
		<pcr_primer_p2>AATCTAATAGGGGCAGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>362</pcr_amplicon_size>
		<canonical_amplicon>TACTTGAAGAATGTGCCTTAAACGGGACCTGGCGGAACCTGTCATTGATTCTTTTAGGATAAATATTTCTGGACTAATTAAATAAGATATTATAGAACTCGACAAGTACTACAAAATGATACTATTTAGAATACTGTATCTTGTCTATGAATCAAGCCAAAACCGTTTGATCTACGGTGTCACAAACATATGGAATTGTAACTTTGTTCATAGACAAGATACAGCAATCCAAATAGTATCATTTGTAGTACTCGTCGAGTTCTATCATATCTAATGTAATCGATCCAAAATATCAATTCTAAAAGAAACTATAACAGAGCCGGAGAGAGCTCGTTTTCGGCCAAGTCTGCCCCTATTAGATT</canonical_amplicon>
		<polymorphic_amplicon>TACTTGAAGAATGTGCCTTAAACGGGACCTGGCGGAACCTGTCATTGATTCTTTTAGGATAAATATTTCTGGACTAATTAAATMAGATATTATAGAACTCGACAAGTACTACAAAATGATACTATTTAGAATACTGTATCTTGTCTATGAATCAAGCCAAAACCGTTTGATCTACGGTGTCACAAACATATGGAATTGTAACTTTGTTCATAGACAAGATACAGCAATCCAAATAGTATCATTTGTAGTACTCGTCGAGTTCTATCATATCTAATGTAATCGATCCAAAATATCAATTCTAAAAGAAACTATAACAGAGCCGGAGAGAGCTCGTTTTCGGCCAAGTCTGCCCCTATTAGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29560</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>69163</contig_pos>
        <strand></strand>
        <context>aaccgtttga[T/G]ctacggtgtc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ACTATTTAGAATACTGTATCTTGTCTATGAATCAAGCCAAAACCGTTTGA</left_flank>
        <right_flank>CTACGGTGTCACAAACATATGGAATTGTAACTTTGTTCATAGACAAGATA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCAGACGAGCTGGAAGCGCAGGCCAAGGTATGAGAACCACGTGGATGCCTGAAAATCTGAAAAATATGAACATTTTCAGCTGGTCTTTACCAACATTGTCATTGAAATGGATCATATCGTCAAAGCAATGCCATCTGCACATTTCAATTTCACGGATCCCATGAGAGAGGTGAGATTTTTAGCATTTTGGTCTTCTGCACAATTTTTGCACTTTTGTTTTTAGTCATGTCTAGGGAAAAGTATTTTTGCTCTTGATTATGTGATCTGTCACAGTTGGATTTCTGTGTTTAAATTTGAATTTTTGAAGGATGACTACTATTTGATTGCATACTTGAAGAATGTGCCTTAAACGGGACCTGGCGGAACCTGTCATTGATTCTTTTAGGATAAATATTTCTGGACTAATTAAATAAGATATTATAGAACTCGACAAGTACTACAAAATGATACTATTTAGAATACTGTATCTTGTCTATGAATCAAGCCAAAACCGTTTGATCTACGGTGTCACAAACATATGGAATTGTAACTTTGTTCATAGACAAGATACAGCAATCCAAATAGTATCATTTGTAGTACTCGTCGAGTTCTATCATATCTAATGTAATCGATCCAAAATATCAATTCTAAAAGAAACTATAACAGAGCCGGAGAGAGCTCGTTTTCGGCCAAGTCTGCCCCTATTAGATTGAACCTCCAACCTTCAAATTTTCAGCACGACGTTCACATGCTGACCCTCTACATCAAGGACATGCAGCACAAGTCCTTCCATGCAGATGCTGCAGAACACGTGGCAAAACTTTGGAAGGATCCAGTCATCAAGAGACTCTACGCTGAACGACGCGAGCGCAATATCAGAGATATTGGAGACAACACTGAATAGTAAGATATTGATTTTTAAAACTTCTCCTCAAAAATTTTCTTCTTTCAGCTTCTTCGAGAATCTCGACAGAATTGCCAAGCCAGACTACAGTCCAAACTCTATGGACACACTTCTCT</canonical>
            <polymorphic>GGCAGACGAGCTGGAAGCGCAGGCCAAGGTATGAGAACCACGTGGATGCCTGAAAATCTGAAAAATATGAACATTTTCAGCTGGTCTTTACCAACATTGTCATTGAAATGGATCATATCGTCAAAGCAATGCCATCTGCACATTTCAATTTCACGGATCCCATGAGAGAGGTGAGATTTTTAGCATTTTGGTCTTCTGCACAATTTTTGCACTTTTGTTTTTAGTCATGTCTAGGGAAAAGTATTTTTGCTCTTGATTATGTGATCTGTCACAGTTGGATTTCTGTGTTTAAATTTGAATTTTTGAAGGATGACTACTATTTGATTGCATACTTGAAGAATGTGCCTTAAACGGGACCTGGCGGAACCTGTCATTGATTCTTTTAGGATAAATATTTCTGGACTAATTAAATAAGATATTATAGAACTCGACAAGTACTACAAAATGATACTATTTAGAATACTGTATCTTGTCTATGAATCAAGCCAAAACCGTTTGAKCTACGGTGTCACAAACATATGGAATTGTAACTTTGTTCATAGACAAGATACAGCAATCCAAATAGTATCATTTGTAGTACTCGTCGAGTTCTATCATATCTAATGTAATCGATCCAAAATATCAATTCTAAAAGAAACTATAACAGAGCCGGAGAGAGCTCGTTTTCGGCCAAGTCTGCCCCTATTAGATTGAACCTCCAACCTTCAAATTTTCAGCACGACGTTCACATGCTGACCCTCTACATCAAGGACATGCAGCACAAGTCCTTCCATGCAGATGCTGCAGAACACGTGGCAAAACTTTGGAAGGATCCAGTCATCAAGAGACTCTACGCTGAACGACGCGAGCGCAATATCAGAGATATTGGAGACAACACTGAATAGTAAGATATTGATTTTTAAAACTTCTCCTCAAAAATTTTCTTCTTTCAGCTTCTTCGAGAATCTCGACAGAATTGCCAAGCCAGACTACAGTCCAAACTCTATGGACACACTTCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>235 199 191 113 110 107 45</canonical_bands>
                <polymorphic_bands>348 199 191 110 107 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACTTGAAGAATGTGCCTTAAAC</pcr_primer_p1>
		<pcr_primer_p2>AATCTAATAGGGGCAGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>362</pcr_amplicon_size>
		<canonical_amplicon>TACTTGAAGAATGTGCCTTAAACGGGACCTGGCGGAACCTGTCATTGATTCTTTTAGGATAAATATTTCTGGACTAATTAAATAAGATATTATAGAACTCGACAAGTACTACAAAATGATACTATTTAGAATACTGTATCTTGTCTATGAATCAAGCCAAAACCGTTTGATCTACGGTGTCACAAACATATGGAATTGTAACTTTGTTCATAGACAAGATACAGCAATCCAAATAGTATCATTTGTAGTACTCGTCGAGTTCTATCATATCTAATGTAATCGATCCAAAATATCAATTCTAAAAGAAACTATAACAGAGCCGGAGAGAGCTCGTTTTCGGCCAAGTCTGCCCCTATTAGATT</canonical_amplicon>
		<polymorphic_amplicon>TACTTGAAGAATGTGCCTTAAACGGGACCTGGCGGAACCTGTCATTGATTCTTTTAGGATAAATATTTCTGGACTAATTAAATAAGATATTATAGAACTCGACAAGTACTACAAAATGATACTATTTAGAATACTGTATCTTGTCTATGAATCAAGCCAAAACCGTTTGAKCTACGGTGTCACAAACATATGGAATTGTAACTTTGTTCATAGACAAGATACAGCAATCCAAATAGTATCATTTGTAGTACTCGTCGAGTTCTATCATATCTAATGTAATCGATCCAAAATATCAATTCTAAAAGAAACTATAACAGAGCCGGAGAGAGCTCGTTTTCGGCCAAGTCTGCCCCTATTAGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29561</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>69217</contig_pos>
        <strand></strand>
        <context>caagatacag[C/T]aatccaaata</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGTGTCACAAACATATGGAATTGTAACTTTGTTCATAGACAAGATACAG</left_flank>
        <right_flank>AATCCAAATAGTATCATTTGTAGTACTCGTCGAGTTCTATCATATCTAAT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCTGAAAAATATGAACATTTTCAGCTGGTCTTTACCAACATTGTCATTGAAATGGATCATATCGTCAAAGCAATGCCATCTGCACATTTCAATTTCACGGATCCCATGAGAGAGGTGAGATTTTTAGCATTTTGGTCTTCTGCACAATTTTTGCACTTTTGTTTTTAGTCATGTCTAGGGAAAAGTATTTTTGCTCTTGATTATGTGATCTGTCACAGTTGGATTTCTGTGTTTAAATTTGAATTTTTGAAGGATGACTACTATTTGATTGCATACTTGAAGAATGTGCCTTAAACGGGACCTGGCGGAACCTGTCATTGATTCTTTTAGGATAAATATTTCTGGACTAATTAAATAAGATATTATAGAACTCGACAAGTACTACAAAATGATACTATTTAGAATACTGTATCTTGTCTATGAATCAAGCCAAAACCGTTTGATCTACGGTGTCACAAACATATGGAATTGTAACTTTGTTCATAGACAAGATACAGCAATCCAAATAGTATCATTTGTAGTACTCGTCGAGTTCTATCATATCTAATGTAATCGATCCAAAATATCAATTCTAAAAGAAACTATAACAGAGCCGGAGAGAGCTCGTTTTCGGCCAAGTCTGCCCCTATTAGATTGAACCTCCAACCTTCAAATTTTCAGCACGACGTTCACATGCTGACCCTCTACATCAAGGACATGCAGCACAAGTCCTTCCATGCAGATGCTGCAGAACACGTGGCAAAACTTTGGAAGGATCCAGTCATCAAGAGACTCTACGCTGAACGACGCGAGCGCAATATCAGAGATATTGGAGACAACACTGAATAGTAAGATATTGATTTTTAAAACTTCTCCTCAAAAATTTTCTTCTTTCAGCTTCTTCGAGAATCTCGACAGAATTGCCAAGCCAGACTACAGTCCAAACTCTATGGACACACTTCTCTTGCGAACGAAAACCACCGGAATTGTGGAGGTTCAATTCGAGATCAAGAAGGTCA</canonical>
            <polymorphic>AATCTGAAAAATATGAACATTTTCAGCTGGTCTTTACCAACATTGTCATTGAAATGGATCATATCGTCAAAGCAATGCCATCTGCACATTTCAATTTCACGGATCCCATGAGAGAGGTGAGATTTTTAGCATTTTGGTCTTCTGCACAATTTTTGCACTTTTGTTTTTAGTCATGTCTAGGGAAAAGTATTTTTGCTCTTGATTATGTGATCTGTCACAGTTGGATTTCTGTGTTTAAATTTGAATTTTTGAAGGATGACTACTATTTGATTGCATACTTGAAGAATGTGCCTTAAACGGGACCTGGCGGAACCTGTCATTGATTCTTTTAGGATAAATATTTCTGGACTAATTAAATAAGATATTATAGAACTCGACAAGTACTACAAAATGATACTATTTAGAATACTGTATCTTGTCTATGAATCAAGCCAAAACCGTTTGATCTACGGTGTCACAAACATATGGAATTGTAACTTTGTTCATAGACAAGATACAGYAATCCAAATAGTATCATTTGTAGTACTCGTCGAGTTCTATCATATCTAATGTAATCGATCCAAAATATCAATTCTAAAAGAAACTATAACAGAGCCGGAGAGAGCTCGTTTTCGGCCAAGTCTGCCCCTATTAGATTGAACCTCCAACCTTCAAATTTTCAGCACGACGTTCACATGCTGACCCTCTACATCAAGGACATGCAGCACAAGTCCTTCCATGCAGATGCTGCAGAACACGTGGCAAAACTTTGGAAGGATCCAGTCATCAAGAGACTCTACGCTGAACGACGCGAGCGCAATATCAGAGATATTGGAGACAACACTGAATAGTAAGATATTGATTTTTAAAACTTCTCCTCAAAAATTTTCTTCTTTCAGCTTCTTCGAGAATCTCGACAGAATTGCCAAGCCAGACTACAGTCCAAACTCTATGGACACACTTCTCTTGCGAACGAAAACCACCGGAATTGTGGAGGTTCAATTCGAGATCAAGAAGGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTTGAAGAATGTGCCTTAAAC</pcr_primer_p1>
		<pcr_primer_p2>AATCTAATAGGGGCAGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>362</pcr_amplicon_size>
		<canonical_amplicon>TACTTGAAGAATGTGCCTTAAACGGGACCTGGCGGAACCTGTCATTGATTCTTTTAGGATAAATATTTCTGGACTAATTAAATAAGATATTATAGAACTCGACAAGTACTACAAAATGATACTATTTAGAATACTGTATCTTGTCTATGAATCAAGCCAAAACCGTTTGATCTACGGTGTCACAAACATATGGAATTGTAACTTTGTTCATAGACAAGATACAGCAATCCAAATAGTATCATTTGTAGTACTCGTCGAGTTCTATCATATCTAATGTAATCGATCCAAAATATCAATTCTAAAAGAAACTATAACAGAGCCGGAGAGAGCTCGTTTTCGGCCAAGTCTGCCCCTATTAGATT</canonical_amplicon>
		<polymorphic_amplicon>TACTTGAAGAATGTGCCTTAAACGGGACCTGGCGGAACCTGTCATTGATTCTTTTAGGATAAATATTTCTGGACTAATTAAATAAGATATTATAGAACTCGACAAGTACTACAAAATGATACTATTTAGAATACTGTATCTTGTCTATGAATCAAGCCAAAACCGTTTGATCTACGGTGTCACAAACATATGGAATTGTAACTTTGTTCATAGACAAGATACAGYAATCCAAATAGTATCATTTGTAGTACTCGTCGAGTTCTATCATATCTAATGTAATCGATCCAAAATATCAATTCTAAAAGAAACTATAACAGAGCCGGAGAGAGCTCGTTTTCGGCCAAGTCTGCCCCTATTAGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29562</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>69254</contig_pos>
        <strand></strand>
        <context>tcgtcgagtt[C/A]tatcatatct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AGACAAGATACAGCAATCCAAATAGTATCATTTGTAGTACTCGTCGAGTT</left_flank>
        <right_flank>TATCATATCTAATGTAATCGATCCAAAATATCAATTCTAAAAGAAACTAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACATTGTCATTGAAATGGATCATATCGTCAAAGCAATGCCATCTGCACATTTCAATTTCACGGATCCCATGAGAGAGGTGAGATTTTTAGCATTTTGGTCTTCTGCACAATTTTTGCACTTTTGTTTTTAGTCATGTCTAGGGAAAAGTATTTTTGCTCTTGATTATGTGATCTGTCACAGTTGGATTTCTGTGTTTAAATTTGAATTTTTGAAGGATGACTACTATTTGATTGCATACTTGAAGAATGTGCCTTAAACGGGACCTGGCGGAACCTGTCATTGATTCTTTTAGGATAAATATTTCTGGACTAATTAAATAAGATATTATAGAACTCGACAAGTACTACAAAATGATACTATTTAGAATACTGTATCTTGTCTATGAATCAAGCCAAAACCGTTTGATCTACGGTGTCACAAACATATGGAATTGTAACTTTGTTCATAGACAAGATACAGCAATCCAAATAGTATCATTTGTAGTACTCGTCGAGTTCTATCATATCTAATGTAATCGATCCAAAATATCAATTCTAAAAGAAACTATAACAGAGCCGGAGAGAGCTCGTTTTCGGCCAAGTCTGCCCCTATTAGATTGAACCTCCAACCTTCAAATTTTCAGCACGACGTTCACATGCTGACCCTCTACATCAAGGACATGCAGCACAAGTCCTTCCATGCAGATGCTGCAGAACACGTGGCAAAACTTTGGAAGGATCCAGTCATCAAGAGACTCTACGCTGAACGACGCGAGCGCAATATCAGAGATATTGGAGACAACACTGAATAGTAAGATATTGATTTTTAAAACTTCTCCTCAAAAATTTTCTTCTTTCAGCTTCTTCGAGAATCTCGACAGAATTGCCAAGCCAGACTACAGTCCAAACTCTATGGACACACTTCTCTTGCGAACGAAAACCACCGGAATTGTGGAGGTTCAATTCGAGATCAAGAAGGTCAAGTTCAGAGTGTTCGATGTGGGAGGTCAGCGATCGGA</canonical>
            <polymorphic>CAACATTGTCATTGAAATGGATCATATCGTCAAAGCAATGCCATCTGCACATTTCAATTTCACGGATCCCATGAGAGAGGTGAGATTTTTAGCATTTTGGTCTTCTGCACAATTTTTGCACTTTTGTTTTTAGTCATGTCTAGGGAAAAGTATTTTTGCTCTTGATTATGTGATCTGTCACAGTTGGATTTCTGTGTTTAAATTTGAATTTTTGAAGGATGACTACTATTTGATTGCATACTTGAAGAATGTGCCTTAAACGGGACCTGGCGGAACCTGTCATTGATTCTTTTAGGATAAATATTTCTGGACTAATTAAATAAGATATTATAGAACTCGACAAGTACTACAAAATGATACTATTTAGAATACTGTATCTTGTCTATGAATCAAGCCAAAACCGTTTGATCTACGGTGTCACAAACATATGGAATTGTAACTTTGTTCATAGACAAGATACAGCAATCCAAATAGTATCATTTGTAGTACTCGTCGAGTTMTATCATATCTAATGTAATCGATCCAAAATATCAATTCTAAAAGAAACTATAACAGAGCCGGAGAGAGCTCGTTTTCGGCCAAGTCTGCCCCTATTAGATTGAACCTCCAACCTTCAAATTTTCAGCACGACGTTCACATGCTGACCCTCTACATCAAGGACATGCAGCACAAGTCCTTCCATGCAGATGCTGCAGAACACGTGGCAAAACTTTGGAAGGATCCAGTCATCAAGAGACTCTACGCTGAACGACGCGAGCGCAATATCAGAGATATTGGAGACAACACTGAATAGTAAGATATTGATTTTTAAAACTTCTCCTCAAAAATTTTCTTCTTTCAGCTTCTTCGAGAATCTCGACAGAATTGCCAAGCCAGACTACAGTCCAAACTCTATGGACACACTTCTCTTGCGAACGAAAACCACCGGAATTGTGGAGGTTCAATTCGAGATCAAGAAGGTCAAGTTCAGAGTGTTCGATGTGGGAGGTCAGCGATCGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTTGAAGAATGTGCCTTAAAC</pcr_primer_p1>
		<pcr_primer_p2>AATCTAATAGGGGCAGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>362</pcr_amplicon_size>
		<canonical_amplicon>TACTTGAAGAATGTGCCTTAAACGGGACCTGGCGGAACCTGTCATTGATTCTTTTAGGATAAATATTTCTGGACTAATTAAATAAGATATTATAGAACTCGACAAGTACTACAAAATGATACTATTTAGAATACTGTATCTTGTCTATGAATCAAGCCAAAACCGTTTGATCTACGGTGTCACAAACATATGGAATTGTAACTTTGTTCATAGACAAGATACAGCAATCCAAATAGTATCATTTGTAGTACTCGTCGAGTTCTATCATATCTAATGTAATCGATCCAAAATATCAATTCTAAAAGAAACTATAACAGAGCCGGAGAGAGCTCGTTTTCGGCCAAGTCTGCCCCTATTAGATT</canonical_amplicon>
		<polymorphic_amplicon>TACTTGAAGAATGTGCCTTAAACGGGACCTGGCGGAACCTGTCATTGATTCTTTTAGGATAAATATTTCTGGACTAATTAAATAAGATATTATAGAACTCGACAAGTACTACAAAATGATACTATTTAGAATACTGTATCTTGTCTATGAATCAAGCCAAAACCGTTTGATCTACGGTGTCACAAACATATGGAATTGTAACTTTGTTCATAGACAAGATACAGCAATCCAAATAGTATCATTTGTAGTACTCGTCGAGTTMTATCATATCTAATGTAATCGATCCAAAATATCAATTCTAAAAGAAACTATAACAGAGCCGGAGAGAGCTCGTTTTCGGCCAAGTCTGCCCCTATTAGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29563</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>76253</contig_pos>
        <strand>+</strand>
        <context>CGGAATTTGC[G/T]GGGTCTCTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCCGGCCACTTTCCCTGGTTTTTTTCCCGATTTTTTCCCCGGAATTTGC</left_flank>
        <right_flank>GGGTCTCTTCCCACAAACCACATAAGCAAACCGTCTAGCGGTCTTCCCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGTGGGCTTATATTATAAGAGATACGGTATTCCAAAATTTTCTAGAATCTTTCAAAAACATAGTTACAAGAAAAGTTGTTTCCAGCCGACTCCTTGACATTAGCATCCACCACACCTACCCTTGAACCGACAACAACGACCACTGAAACAACCACAACCACCACAACCACAACAACAGTTGCTCCCATAACAACAACTGCTCTAACAAGAAAACTGGCCCAAGGACCACCACAATGCATTGTCAACAAAGAATGCTATAAGGATTCTGAATGCCCATCGGTAATTATTAGCAATAGAGCGCATATTCCTCTTTCCCTCTTCCCACAGAGACCCCGCCAATTCCGGGGAAAGAAAAAACCTGGGAAAAAAACCGGGGAAAAGTGGGCGGAGTCGGGGGCGGAGCCTAAATTGCAACCCTGGCACGGTTTTGCCGCACGGTTTTTCTCGACTCCGGCCACTTTCCCTGGTTTTTTTCCCGATTTTTTCCCCGGAATTTGCTGGGTCTCTTCCCACAAACCACATAAGCAAACCGTCTAGCGGTCTTCCCCTTCTCCCGCGTACAGTTCTCTCTCTTCCTCTTCCTCCCCCCCTTAATGTCATAGTATAGACGGACATGTCAATCTCGTGCTGCGATGTCCGAGTGGTTAAGGAGTTGGACTTGAAATCCAATGGGCATTGCCCGCGTAGGTTCGAACCCTGCTCGCAGCGAATTCTTTTTAAAAATTTTTTTCAAAAAATTTTATTATTCCGAATGTTTCTGCTTTCAGGGAAAATGCCTGGGAAGTGAACTTGGAGTATGTGACTGCAACGCGTGCATCACAAACCGTAAATGCGACAGTGACGTGGATTGTGGAGGACTTCGAAACGCTTGTGACTCAACTGGATATTGTGATTGTGTCAAAGCCTTTCACTCTCATGGATACGAACTTTTCGTAAAAGTTCTCCTAACTTTTTGCCACCAAACAAAGTGTACACAAGACACTGATAACTGCTACGGGC</canonical>
            <polymorphic>GGGTGGGCTTATATTATAAGAGATACGGTATTCCAAAATTTTCTAGAATCTTTCAAAAACATAGTTACAAGAAAAGTTGTTTCCAGCCGACTCCTTGACATTAGCATCCACCACACCTACCCTTGAACCGACAACAACGACCACTGAAACAACCACAACCACCACAACCACAACAACAGTTGCTCCCATAACAACAACTGCTCTAACAAGAAAACTGGCCCAAGGACCACCACAATGCATTGTCAACAAAGAATGCTATAAGGATTCTGAATGCCCATCGGTAATTATTAGCAATAGAGCGCATATTCCTCTTTCCCTCTTCCCACAGAGACCCCGCCAATTCCGGGGAAAGAAAAAACCTGGGAAAAAAACCGGGGAAAAGTGGGCGGAGTCGGGGGCGGAGCCTAAATTGCAACCCTGGCACGGTTTTGCCGCACGGTTTTTCTCGACTCCGGCCACTTTCCCTGGTTTTTTTCCCGATTTTTTCCCCGGAATTTGCKGGGTCTCTTCCCACAAACCACATAAGCAAACCGTCTAGCGGTCTTCCCCTTCTCCCGCGTACAGTTCTCTCTCTTCCTCTTCCTCCCCCCCTTAATGTCATAGTATAGACGGACATGTCAATCTCGTGCTGCGATGTCCGAGTGGTTAAGGAGTTGGACTTGAAATCCAATGGGCATTGCCCGCGTAGGTTCGAACCCTGCTCGCAGCGAATTCTTTTTAAAAATTTTTTTCAAAAAATTTTATTATTCCGAATGTTTCTGCTTTCAGGGAAAATGCCTGGGAAGTGAACTTGGAGTATGTGACTGCAACGCGTGCATCACAAACCGTAAATGCGACAGTGACGTGGATTGTGGAGGACTTCGAAACGCTTGTGACTCAACTGGATATTGTGATTGTGTCAAAGCCTTTCACTCTCATGGATACGAACTTTTCGTAAAAGTTCTCCTAACTTTTTGCCACCAAACAAAGTGTACACAAGACACTGATAACTGCTACGGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGGTAATTATTAGCAATAGAGC</pcr_primer_p1>
		<pcr_primer_p2>AGAGGAAGAGAGAGAACTGTACG</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>TCGGTAATTATTAGCAATAGAGCGCATATTCCTCTTTCCCTCTTCCCACAGAGACCCCGCCAATTCCGGGGAAAGAAAAAACCTGGGAAAAAAACCGGGGAAAAGTGGGCGGAGTCGGGGGCGGAGCCTAAATTGCAACCCTGGCACGGTTTTGCCGCACGGTTTTTCTCGACTCCGGCCACTTTCCCTGGTTTTTTTCCCGATTTTTTCCCCGGAATTTGCTGGGTCTCTTCCCACAAACCACATAAGCAAACCGTCTAGCGGTCTTCCCCTTCTCCCGCGTACAGTTCTCTCTCTTCCTCT</canonical_amplicon>
		<polymorphic_amplicon>TCGGTAATTATTAGCAATAGAGCGCATATTCCTCTTTCCCTCTTCCCACAGAGACCCCGCCAATTCCGGGGAAAGAAAAAACCTGGGAAAAAAACCGGGGAAAAGTGGGCGGAGTCGGGGGCGGAGCCTAAATTGCAACCCTGGCACGGTTTTGCCGCACGGTTTTTCTCGACTCCGGCCACTTTCCCTGGTTTTTTTCCCGATTTTTTCCCCGGAATTTGCKGGGTCTCTTCCCACAAACCACATAAGCAAACCGTCTAGCGGTCTTCCCCTTCTCCCGCGTACAGTTCTCTCTCTTCCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29564</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>90298</contig_pos>
        <strand></strand>
        <context>cctgtaagaa[A/G]aamgtccctt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGACGGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAA</left_flank>
        <right_flank>AACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGCATGTTATGGTCCAGCTGAAATTTATTTTTTTAGAAGGGAACTAGTTACTGTAAAACCTGTAATAGAAGGGCCTTTTGACAAGCCGAATTTTCTCAGCTCCTGTTGAAGATATAGAGAAGTTGTCAACTGATAAAATCACTTTTAATATTGTGATAAACAATTTTTCTGTTGACAACTTTTTGATATCTCTCACAGGAACAGAGATAATTGAGCTCAAACCAGACGGAATGTGGCTCTTCTATTGCAGGTTTCCCGGTAATACCAACAAAATACCTCTCTTTGAATATCATACAAATCATTGATATTCCAAAAGTCAATAGATTCCATTCCCGTTGTATTCTGAAGCCACTTGAACATTTGACCATACTCATTGTTGATTTGAGCAGCTATCGGAGATTCTTCTTGCTCGTTGGCCAAGTCGTAAGCTGGACAATCAACTTTTGTGGGACGGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATACGCAGTTTGTATGGGTGTAGGCTGCCAATATCGGAGATACGAAGACTCCCAAACACGATCATCCACTGGTGGAAATAGACCAGCAGACACCCCTTGAGCAGTTTCTATGGCTCTTTCCGAATCGGAAGATAGAATGAACACTTTGTTTTTGTTGAAGACGGGTAGTACTGTAGCTCCATATCGTTGTCGTAACCAGATGCCAAGTTCAACAGCTTGCCAAATTCCTTTCTGAAAATTAAAAAAATCAACTCGTGACCCAAACAATCCCACTCACATTGGTCAACTGATCCCATCCACGTGGCCAGTAGG</canonical>
            <polymorphic>GTGGCATGTTATGGTCCAGCTGAAATTTATTTTTTTAGAAGGGAACTAGTTACTGTAAAACCTGTAATAGAAGGGCCTTTTGACAAGCCGAATTTTCTCAGCTCCTGTTGAAGATATAGAGAAGTTGTCAACTGATAAAATCACTTTTAATATTGTGATAAACAATTTTTCTGTTGACAACTTTTTGATATCTCTCACAGGAACAGAGATAATTGAGCTCAAACCAGACGGAATGTGGCTCTTCTATTGCAGGTTTCCCGGTAATACCAACAAAATACCTCTCTTTGAATATCATACAAATCATTGATATTCCAAAAGTCAATAGATTCCATTCCCGTTGTATTCTGAAGCCACTTGAACATTTGACCATACTCATTGTTGATTTGAGCAGCTATCGGAGATTCTTCTTGCTCGTTGGCCAAGTCGTAAGCTGGACAATCAACTTTTGTGGGACGGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAARAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATACGCAGTTTGTATGGGTGTAGGCTGCCAATATCGGAGATACGAAGACTCCCAAACACGATCATCCACTGGTGGAAATAGACCAGCAGACACCCCTTGAGCAGTTTCTATGGCTCTTTCCGAATCGGAAGATAGAATGAACACTTTGTTTTTGTTGAAGACGGGTAGTACTGTAGCTCCATATCGTTGTCGTAACCAGATGCCAAGTTCAACAGCTTGCCAAATTCCTTTCTGAAAATTAAAAAAATCAACTCGTGACCCAAACAATCCCACTCACATTGGTCAACTGATCCCATCCACGTGGCCAGTAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAAGCTGGACAATCAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>TATGGGACTATAGATGCTGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>266</pcr_amplicon_size>
		<canonical_amplicon>GTAAGCTGGACAATCAACTTTTGTGGGACGGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATA</canonical_amplicon>
		<polymorphic_amplicon>GTAAGCTGGACAATCAACTTTTGTGGGACGGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAARAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29565</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>90301</contig_pos>
        <strand></strand>
        <context>gtaagaaraa[C/A]gtcccttgct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ACGGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAA</left_flank>
        <right_flank>GTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCATGTTATGGTCCAGCTGAAATTTATTTTTTTAGAAGGGAACTAGTTACTGTAAAACCTGTAATAGAAGGGCCTTTTGACAAGCCGAATTTTCTCAGCTCCTGTTGAAGATATAGAGAAGTTGTCAACTGATAAAATCACTTTTAATATTGTGATAAACAATTTTTCTGTTGACAACTTTTTGATATCTCTCACAGGAACAGAGATAATTGAGCTCAAACCAGACGGAATGTGGCTCTTCTATTGCAGGTTTCCCGGTAATACCAACAAAATACCTCTCTTTGAATATCATACAAATCATTGATATTCCAAAAGTCAATAGATTCCATTCCCGTTGTATTCTGAAGCCACTTGAACATTTGACCATACTCATTGTTGATTTGAGCAGCTATCGGAGATTCTTCTTGCTCGTTGGCCAAGTCGTAAGCTGGACAATCAACTTTTGTGGGACGGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATACGCAGTTTGTATGGGTGTAGGCTGCCAATATCGGAGATACGAAGACTCCCAAACACGATCATCCACTGGTGGAAATAGACCAGCAGACACCCCTTGAGCAGTTTCTATGGCTCTTTCCGAATCGGAAGATAGAATGAACACTTTGTTTTTGTTGAAGACGGGTAGTACTGTAGCTCCATATCGTTGTCGTAACCAGATGCCAAGTTCAACAGCTTGCCAAATTCCTTTCTGAAAATTAAAAAAATCAACTCGTGACCCAAACAATCCCACTCACATTGGTCAACTGATCCCATCCACGTGGCCAGTAGGTCT</canonical>
            <polymorphic>GCATGTTATGGTCCAGCTGAAATTTATTTTTTTAGAAGGGAACTAGTTACTGTAAAACCTGTAATAGAAGGGCCTTTTGACAAGCCGAATTTTCTCAGCTCCTGTTGAAGATATAGAGAAGTTGTCAACTGATAAAATCACTTTTAATATTGTGATAAACAATTTTTCTGTTGACAACTTTTTGATATCTCTCACAGGAACAGAGATAATTGAGCTCAAACCAGACGGAATGTGGCTCTTCTATTGCAGGTTTCCCGGTAATACCAACAAAATACCTCTCTTTGAATATCATACAAATCATTGATATTCCAAAAGTCAATAGATTCCATTCCCGTTGTATTCTGAAGCCACTTGAACATTTGACCATACTCATTGTTGATTTGAGCAGCTATCGGAGATTCTTCTTGCTCGTTGGCCAAGTCGTAAGCTGGACAATCAACTTTTGTGGGACGGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAAMGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATACGCAGTTTGTATGGGTGTAGGCTGCCAATATCGGAGATACGAAGACTCCCAAACACGATCATCCACTGGTGGAAATAGACCAGCAGACACCCCTTGAGCAGTTTCTATGGCTCTTTCCGAATCGGAAGATAGAATGAACACTTTGTTTTTGTTGAAGACGGGTAGTACTGTAGCTCCATATCGTTGTCGTAACCAGATGCCAAGTTCAACAGCTTGCCAAATTCCTTTCTGAAAATTAAAAAAATCAACTCGTGACCCAAACAATCCCACTCACATTGGTCAACTGATCCCATCCACGTGGCCAGTAGGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>499 485 16</canonical_bands>
                <polymorphic_bands>984 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAAGCTGGACAATCAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>TATGGGACTATAGATGCTGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>266</pcr_amplicon_size>
		<canonical_amplicon>GTAAGCTGGACAATCAACTTTTGTGGGACGGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATA</canonical_amplicon>
		<polymorphic_amplicon>GTAAGCTGGACAATCAACTTTTGTGGGACGGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAAMGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29566</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>90316</contig_pos>
        <strand></strand>
        <context>cttgctttga[T/G]ccaatttatc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGA</left_flank>
        <right_flank>CCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTGAAATTTATTTTTTTAGAAGGGAACTAGTTACTGTAAAACCTGTAATAGAAGGGCCTTTTGACAAGCCGAATTTTCTCAGCTCCTGTTGAAGATATAGAGAAGTTGTCAACTGATAAAATCACTTTTAATATTGTGATAAACAATTTTTCTGTTGACAACTTTTTGATATCTCTCACAGGAACAGAGATAATTGAGCTCAAACCAGACGGAATGTGGCTCTTCTATTGCAGGTTTCCCGGTAATACCAACAAAATACCTCTCTTTGAATATCATACAAATCATTGATATTCCAAAAGTCAATAGATTCCATTCCCGTTGTATTCTGAAGCCACTTGAACATTTGACCATACTCATTGTTGATTTGAGCAGCTATCGGAGATTCTTCTTGCTCGTTGGCCAAGTCGTAAGCTGGACAATCAACTTTTGTGGGACGGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATACGCAGTTTGTATGGGTGTAGGCTGCCAATATCGGAGATACGAAGACTCCCAAACACGATCATCCACTGGTGGAAATAGACCAGCAGACACCCCTTGAGCAGTTTCTATGGCTCTTTCCGAATCGGAAGATAGAATGAACACTTTGTTTTTGTTGAAGACGGGTAGTACTGTAGCTCCATATCGTTGTCGTAACCAGATGCCAAGTTCAACAGCTTGCCAAATTCCTTTCTGAAAATTAAAAAAATCAACTCGTGACCCAAACAATCCCACTCACATTGGTCAACTGATCCCATCCACGTGGCCAGTAGGTCTCATTGTACCTATCCT</canonical>
            <polymorphic>GCTGAAATTTATTTTTTTAGAAGGGAACTAGTTACTGTAAAACCTGTAATAGAAGGGCCTTTTGACAAGCCGAATTTTCTCAGCTCCTGTTGAAGATATAGAGAAGTTGTCAACTGATAAAATCACTTTTAATATTGTGATAAACAATTTTTCTGTTGACAACTTTTTGATATCTCTCACAGGAACAGAGATAATTGAGCTCAAACCAGACGGAATGTGGCTCTTCTATTGCAGGTTTCCCGGTAATACCAACAAAATACCTCTCTTTGAATATCATACAAATCATTGATATTCCAAAAGTCAATAGATTCCATTCCCGTTGTATTCTGAAGCCACTTGAACATTTGACCATACTCATTGTTGATTTGAGCAGCTATCGGAGATTCTTCTTGCTCGTTGGCCAAGTCGTAAGCTGGACAATCAACTTTTGTGGGACGGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGAKCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATACGCAGTTTGTATGGGTGTAGGCTGCCAATATCGGAGATACGAAGACTCCCAAACACGATCATCCACTGGTGGAAATAGACCAGCAGACACCCCTTGAGCAGTTTCTATGGCTCTTTCCGAATCGGAAGATAGAATGAACACTTTGTTTTTGTTGAAGACGGGTAGTACTGTAGCTCCATATCGTTGTCGTAACCAGATGCCAAGTTCAACAGCTTGCCAAATTCCTTTCTGAAAATTAAAAAAATCAACTCGTGACCCAAACAATCCCACTCACATTGGTCAACTGATCCCATCCACGTGGCCAGTAGGTCTCATTGTACCTATCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>497 232 229 42</canonical_bands>
                <polymorphic_bands>729 229 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAGAAGCTGAAAAAGAGAAATA</pcr_primer_p1>
		<pcr_primer_p2>GTATGGGACTATAGATGCTGTGA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>GGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATAC</canonical_amplicon>
		<polymorphic_amplicon>GGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGAKCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29567</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>90355</contig_pos>
        <strand></strand>
        <context>ttcaaaaaaa[T/A]gtcataaatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAA</left_flank>
        <right_flank>GTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACCTGTAATAGAAGGGCCTTTTGACAAGCCGAATTTTCTCAGCTCCTGTTGAAGATATAGAGAAGTTGTCAACTGATAAAATCACTTTTAATATTGTGATAAACAATTTTTCTGTTGACAACTTTTTGATATCTCTCACAGGAACAGAGATAATTGAGCTCAAACCAGACGGAATGTGGCTCTTCTATTGCAGGTTTCCCGGTAATACCAACAAAATACCTCTCTTTGAATATCATACAAATCATTGATATTCCAAAAGTCAATAGATTCCATTCCCGTTGTATTCTGAAGCCACTTGAACATTTGACCATACTCATTGTTGATTTGAGCAGCTATCGGAGATTCTTCTTGCTCGTTGGCCAAGTCGTAAGCTGGACAATCAACTTTTGTGGGACGGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATACGCAGTTTGTATGGGTGTAGGCTGCCAATATCGGAGATACGAAGACTCCCAAACACGATCATCCACTGGTGGAAATAGACCAGCAGACACCCCTTGAGCAGTTTCTATGGCTCTTTCCGAATCGGAAGATAGAATGAACACTTTGTTTTTGTTGAAGACGGGTAGTACTGTAGCTCCATATCGTTGTCGTAACCAGATGCCAAGTTCAACAGCTTGCCAAATTCCTTTCTGAAAATTAAAAAAATCAACTCGTGACCCAAACAATCCCACTCACATTGGTCAACTGATCCCATCCACGTGGCCAGTAGGTCTCATTGTACCTATCCTTGGGATACGGTAGATCTCCTGGAGCTCGATCTCCGTGCC</canonical>
            <polymorphic>AAACCTGTAATAGAAGGGCCTTTTGACAAGCCGAATTTTCTCAGCTCCTGTTGAAGATATAGAGAAGTTGTCAACTGATAAAATCACTTTTAATATTGTGATAAACAATTTTTCTGTTGACAACTTTTTGATATCTCTCACAGGAACAGAGATAATTGAGCTCAAACCAGACGGAATGTGGCTCTTCTATTGCAGGTTTCCCGGTAATACCAACAAAATACCTCTCTTTGAATATCATACAAATCATTGATATTCCAAAAGTCAATAGATTCCATTCCCGTTGTATTCTGAAGCCACTTGAACATTTGACCATACTCATTGTTGATTTGAGCAGCTATCGGAGATTCTTCTTGCTCGTTGGCCAAGTCGTAAGCTGGACAATCAACTTTTGTGGGACGGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAAWGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATACGCAGTTTGTATGGGTGTAGGCTGCCAATATCGGAGATACGAAGACTCCCAAACACGATCATCCACTGGTGGAAATAGACCAGCAGACACCCCTTGAGCAGTTTCTATGGCTCTTTCCGAATCGGAAGATAGAATGAACACTTTGTTTTTGTTGAAGACGGGTAGTACTGTAGCTCCATATCGTTGTCGTAACCAGATGCCAAGTTCAACAGCTTGCCAAATTCCTTTCTGAAAATTAAAAAAATCAACTCGTGACCCAAACAATCCCACTCACATTGGTCAACTGATCCCATCCACGTGGCCAGTAGGTCTCATTGTACCTATCCTTGGGATACGGTAGATCTCCTGGAGCTCGATCTCCGTGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGAAGCTGAAAAAGAGAAATA</pcr_primer_p1>
		<pcr_primer_p2>GTATGGGACTATAGATGCTGTGA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>GGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATAC</canonical_amplicon>
		<polymorphic_amplicon>GGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAAWGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29568</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>90445</contig_pos>
        <strand></strand>
        <context>aactagctca[A/T]mcttgacaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCA</left_flank>
        <right_flank>ACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATACGCAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATATTGTGATAAACAATTTTTCTGTTGACAACTTTTTGATATCTCTCACAGGAACAGAGATAATTGAGCTCAAACCAGACGGAATGTGGCTCTTCTATTGCAGGTTTCCCGGTAATACCAACAAAATACCTCTCTTTGAATATCATACAAATCATTGATATTCCAAAAGTCAATAGATTCCATTCCCGTTGTATTCTGAAGCCACTTGAACATTTGACCATACTCATTGTTGATTTGAGCAGCTATCGGAGATTCTTCTTGCTCGTTGGCCAAGTCGTAAGCTGGACAATCAACTTTTGTGGGACGGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATACGCAGTTTGTATGGGTGTAGGCTGCCAATATCGGAGATACGAAGACTCCCAAACACGATCATCCACTGGTGGAAATAGACCAGCAGACACCCCTTGAGCAGTTTCTATGGCTCTTTCCGAATCGGAAGATAGAATGAACACTTTGTTTTTGTTGAAGACGGGTAGTACTGTAGCTCCATATCGTTGTCGTAACCAGATGCCAAGTTCAACAGCTTGCCAAATTCCTTTCTGAAAATTAAAAAAATCAACTCGTGACCCAAACAATCCCACTCACATTGGTCAACTGATCCCATCCACGTGGCCAGTAGGTCTCATTGTACCTATCCTTGGGATACGGTAGATCTCCTGGAGCTCGATCTCCGTGCCTCCAAATCGCTTGCATCATGATTAAATTGGCACTATAGACATAGGTGAACACAGAAGAAAGAAGAAGAATGCGAATCATGGCAAGGTTCA</canonical>
            <polymorphic>TAATATTGTGATAAACAATTTTTCTGTTGACAACTTTTTGATATCTCTCACAGGAACAGAGATAATTGAGCTCAAACCAGACGGAATGTGGCTCTTCTATTGCAGGTTTCCCGGTAATACCAACAAAATACCTCTCTTTGAATATCATACAAATCATTGATATTCCAAAAGTCAATAGATTCCATTCCCGTTGTATTCTGAAGCCACTTGAACATTTGACCATACTCATTGTTGATTTGAGCAGCTATCGGAGATTCTTCTTGCTCGTTGGCCAAGTCGTAAGCTGGACAATCAACTTTTGTGGGACGGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAWACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATACGCAGTTTGTATGGGTGTAGGCTGCCAATATCGGAGATACGAAGACTCCCAAACACGATCATCCACTGGTGGAAATAGACCAGCAGACACCCCTTGAGCAGTTTCTATGGCTCTTTCCGAATCGGAAGATAGAATGAACACTTTGTTTTTGTTGAAGACGGGTAGTACTGTAGCTCCATATCGTTGTCGTAACCAGATGCCAAGTTCAACAGCTTGCCAAATTCCTTTCTGAAAATTAAAAAAATCAACTCGTGACCCAAACAATCCCACTCACATTGGTCAACTGATCCCATCCACGTGGCCAGTAGGTCTCATTGTACCTATCCTTGGGATACGGTAGATCTCCTGGAGCTCGATCTCCGTGCCTCCAAATCGCTTGCATCATGATTAAATTGGCACTATAGACATAGGTGAACACAGAAGAAAGAAGAAGAATGCGAATCATGGCAAGGTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGCTGAAAAAGAGAAATAGAT</pcr_primer_p1>
		<pcr_primer_p2>GTTTGGGAGTCTTCGTATCTC</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>AGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATACGCAGTTTGTATGGGTGTAGGCTGCCAATATCGGAGATACGAAGACTCCCAAAC</canonical_amplicon>
		<polymorphic_amplicon>AGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAWACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATACGCAGTTTGTATGGGTGTAGGCTGCCAATATCGGAGATACGAAGACTCCCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29569</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>90446</contig_pos>
        <strand></strand>
        <context>actagctcaw[A/C]cttgacaaag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAA</left_flank>
        <right_flank>CTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATACGCAGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATTGTGATAAACAATTTTTCTGTTGACAACTTTTTGATATCTCTCACAGGAACAGAGATAATTGAGCTCAAACCAGACGGAATGTGGCTCTTCTATTGCAGGTTTCCCGGTAATACCAACAAAATACCTCTCTTTGAATATCATACAAATCATTGATATTCCAAAAGTCAATAGATTCCATTCCCGTTGTATTCTGAAGCCACTTGAACATTTGACCATACTCATTGTTGATTTGAGCAGCTATCGGAGATTCTTCTTGCTCGTTGGCCAAGTCGTAAGCTGGACAATCAACTTTTGTGGGACGGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATACGCAGTTTGTATGGGTGTAGGCTGCCAATATCGGAGATACGAAGACTCCCAAACACGATCATCCACTGGTGGAAATAGACCAGCAGACACCCCTTGAGCAGTTTCTATGGCTCTTTCCGAATCGGAAGATAGAATGAACACTTTGTTTTTGTTGAAGACGGGTAGTACTGTAGCTCCATATCGTTGTCGTAACCAGATGCCAAGTTCAACAGCTTGCCAAATTCCTTTCTGAAAATTAAAAAAATCAACTCGTGACCCAAACAATCCCACTCACATTGGTCAACTGATCCCATCCACGTGGCCAGTAGGTCTCATTGTACCTATCCTTGGGATACGGTAGATCTCCTGGAGCTCGATCTCCGTGCCTCCAAATCGCTTGCATCATGATTAAATTGGCACTATAGACATAGGTGAACACAGAAGAAAGAAGAAGAATGCGAATCATGGCAAGGTTCAC</canonical>
            <polymorphic>AATATTGTGATAAACAATTTTTCTGTTGACAACTTTTTGATATCTCTCACAGGAACAGAGATAATTGAGCTCAAACCAGACGGAATGTGGCTCTTCTATTGCAGGTTTCCCGGTAATACCAACAAAATACCTCTCTTTGAATATCATACAAATCATTGATATTCCAAAAGTCAATAGATTCCATTCCCGTTGTATTCTGAAGCCACTTGAACATTTGACCATACTCATTGTTGATTTGAGCAGCTATCGGAGATTCTTCTTGCTCGTTGGCCAAGTCGTAAGCTGGACAATCAACTTTTGTGGGACGGAGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAMCTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATACGCAGTTTGTATGGGTGTAGGCTGCCAATATCGGAGATACGAAGACTCCCAAACACGATCATCCACTGGTGGAAATAGACCAGCAGACACCCCTTGAGCAGTTTCTATGGCTCTTTCCGAATCGGAAGATAGAATGAACACTTTGTTTTTGTTGAAGACGGGTAGTACTGTAGCTCCATATCGTTGTCGTAACCAGATGCCAAGTTCAACAGCTTGCCAAATTCCTTTCTGAAAATTAAAAAAATCAACTCGTGACCCAAACAATCCCACTCACATTGGTCAACTGATCCCATCCACGTGGCCAGTAGGTCTCATTGTACCTATCCTTGGGATACGGTAGATCTCCTGGAGCTCGATCTCCGTGCCTCCAAATCGCTTGCATCATGATTAAATTGGCACTATAGACATAGGTGAACACAGAAGAAAGAAGAAGAATGCGAATCATGGCAAGGTTCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGCTGAAAAAGAGAAATAGAT</pcr_primer_p1>
		<pcr_primer_p2>GTTTGGGAGTCTTCGTATCTC</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>AGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAACTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATACGCAGTTTGTATGGGTGTAGGCTGCCAATATCGGAGATACGAAGACTCCCAAAC</canonical_amplicon>
		<polymorphic_amplicon>AGAAGCTGAAAAAGAGAAATAGATGCCGTAAAACCTGTAAGAAAAACGTCCCTTGCTTTGATCCAATTTATCTCGGTTCCTATTAACGATTTCAAAAAAATGTCATAAATTGTTTATCATAATTTCCCAAACATTTTATCAGTTGACATATTTTTGATATCTCTCACAGAAATCAAGAAAAACTAGCTCAAMCTTGACAAAGGTATCTGAATCTCACAGCATCTATAGTCCCATACGCAGTTTGTATGGGTGTAGGCTGCCAATATCGGAGATACGAAGACTCCCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29570</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>91954</contig_pos>
        <strand>+</strand>
        <context>CGATCCGTCT[G/T]GTCCAACGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTAAATTCATAATATTTACAGCACATCAGAATGTCCACCGATCCGTCT</left_flank>
        <right_flank>GTCCAACGTCTCCCGAACCAAAGAGAACTAAAATCGAGGAAACTGAGCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATACTGTATTCAATGTTATTAATTTCTGTAAATTTTTGGTCGAATTTTCTGAACCAAATTTTTATTTTTCCATGAAAATATGATCGCTAGCATCTCTCGAACCTTTTCCATGTTGACAATACAAAAATATCTTCTCAAACAAAAATATCTTCTCAATTTCTCTCTAATAGAGTAATCAGATGTTGGAACTCTTTACCCGCCAAAGTGTTTCCGGTGAAGCCCTCGTCAGCGGCTTTCAAAAATCGACTATTATCCTGTGAACTAAAACATTTTCTTGTCTTGAATTCAACTAATTACTAACTCGGTTTTCCTCCATCTCCCATTTAATACAAATGTATGTCCCTGTTATATCTCCTAGTTTCATAGACATTTCACGTGTTAGTATTTTTCTCCCCTTCGTTGAAATAAATAAATAAATAAATAAACAATTGCTGATGTACAGTATCCTTTTTAAATTCATAATATTTACAGCACATCAGAATGTCCACCGATCCGTCTGGTCCAACGTCTCCCGAACCAAAGAGAACTAAAATCGAGGAAACTGAGCAAGAAGAGAAGAATGTGGAAATGGAGACAGCAACAACTACAGAAGTCGCCGAAGAGCCACCAGTCCCATTAAGGAAAGAAGACGTGGAACCAAAGCCGAGCACTGGATCAGAGACGGATCCAAGCTCGGCACGCACCTCGATTCTCCCTTCCAGAACATCAGATACAGTCGGCGAAGAAGTTTCGATCAGTATTAATATCAGTGAAGCCAAAGATGAACCGACCAAAGATGAACCGGATGGTGTTTCTCGAAGTGCCACGACAATCACTGAACACAGTTTGGAGAATTCGGATGAGGAGCGAACAATGGTTGAGTAAGTGCCGCCAGTTCAAGGATCTCAAGTTCAATGGGAAAAAGAGGAGGCTCCAATTCCGGTTATCACCAATCAACCGTTGCCAACGCCAGCTCGTAATCCAGATCGCAGAGAGAGTGCAGCGGGAGACGGATGTTCG</canonical>
            <polymorphic>AATACTGTATTCAATGTTATTAATTTCTGTAAATTTTTGGTCGAATTTTCTGAACCAAATTTTTATTTTTCCATGAAAATATGATCGCTAGCATCTCTCGAACCTTTTCCATGTTGACAATACAAAAATATCTTCTCAAACAAAAATATCTTCTCAATTTCTCTCTAATAGAGTAATCAGATGTTGGAACTCTTTACCCGCCAAAGTGTTTCCGGTGAAGCCCTCGTCAGCGGCTTTCAAAAATCGACTATTATCCTGTGAACTAAAACATTTTCTTGTCTTGAATTCAACTAATTACTAACTCGGTTTTCCTCCATCTCCCATTTAATACAAATGTATGTCCCTGTTATATCTCCTAGTTTCATAGACATTTCACGTGTTAGTATTTTTCTCCCCTTCGTTGAAATAAATAAATAAATAAATAAACAATTGCTGATGTACAGTATCCTTTTTAAATTCATAATATTTACAGCACATCAGAATGTCCACCGATCCGTCTKGTCCAACGTCTCCCGAACCAAAGAGAACTAAAATCGAGGAAACTGAGCAAGAAGAGAAGAATGTGGAAATGGAGACAGCAACAACTACAGAAGTCGCCGAAGAGCCACCAGTCCCATTAAGGAAAGAAGACGTGGAACCAAAGCCGAGCACTGGATCAGAGACGGATCCAAGCTCGGCACGCACCTCGATTCTCCCTTCCAGAACATCAGATACAGTCGGCGAAGAAGTTTCGATCAGTATTAATATCAGTGAAGCCAAAGATGAACCGACCAAAGATGAACCGGATGGTGTTTCTCGAAGTGCCACGACAATCACTGAACACAGTTTGGAGAATTCGGATGAGGAGCGAACAATGGTTGAGTAAGTGCCGCCAGTTCAAGGATCTCAAGTTCAATGGGAAAAAGAGGAGGCTCCAATTCCGGTTATCACCAATCAACCGTTGCCAACGCCAGCTCGTAATCCAGATCGCAGAGAGAGTGCAGCGGGAGACGGATGTTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCATCTCCCATTTAATACAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTCTTCTCTTCTTGCTCAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCATCTCCCATTTAATACAAATGTATGTCCCTGTTATATCTCCTAGTTTCATAGACATTTCACGTGTTAGTATTTTTCTCCCCTTCGTTGAAATAAATAAATAAATAAATAAACAATTGCTGATGTACAGTATCCTTTTTAAATTCATAATATTTACAGCACATCAGAATGTCCACCGATCCGTCTGGTCCAACGTCTCCCGAACCAAAGAGAACTAAAATCGAGGAAACTGAGCAAGAAGAGAAGAAT</canonical_amplicon>
		<polymorphic_amplicon>TCCATCTCCCATTTAATACAAATGTATGTCCCTGTTATATCTCCTAGTTTCATAGACATTTCACGTGTTAGTATTTTTCTCCCCTTCGTTGAAATAAATAAATAAATAAATAAACAATTGCTGATGTACAGTATCCTTTTTAAATTCATAATATTTACAGCACATCAGAATGTCCACCGATCCGTCTKGTCCAACGTCTCCCGAACCAAAGAGAACTAAAATCGAGGAAACTGAGCAAGAAGAGAAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29571</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>124951</contig_pos>
        <strand>+</strand>
        <context>AAAATGAGTA[C/T]CAGGTTCTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGTCCCTTCTATTACAGGTTTTACAGTAATAAACTGTTAAAAATGAGTA</left_flank>
        <right_flank>CAGGTTCTTAACTTCGCATGTAAACGACAATATTGAACCGGAAACTTCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGATAATTATTTTATCAGCTGGTTATGTTTTGATATCTTTTACATTAACCGAGATATAAGGGTTCAAAGTTGGCGGTTGGGGGGCTTTCTATTAGAGTGTCTAGGTTGAATTCCGAGGCTTGCAAATTGTAATTTTGAATCGATAGATTCAGAATTTGTGTTGTGATTTGAAATGTTCCAGAAAATCTTTTTCTCAATTCACAATTCCCAGAATTTTCAGAATCATCATTCCCAAAAATTTACAGAATTTGGATGACCGTAAAACATGTATTATAAGGGCCCCCACATTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATAGCAAAAATGTGTCAACTGGCAAAACATTTCTGATATTATGATAAACAATTTTCAGTTAACAAATCTTTGGTATATTTCACAGGAATCGAGATAATTGAGGTCAAAGTTAAAATTTAGGGGTCCCTTCTATTACAGGTTTTACAGTAATAAACTGTTAAAAATGAGTATCAGGTTCTTAACTTCGCATGTAAACGACAATATTGAACCGGAAACTTCATTCTATACAGTACAAAGTCAAAGCAAAACCCGAAAATTCTTGATTCTTGCGGTTCCTTATCACCTCGAAACGAAAAAACCGCCAAACAACATGTGAAATCGTAAAACTTCAAAAGAAAGAATTCAAAGAATGAAAGCATCCATAAAGTCTCATTGTCTCATATCACAAGGCAACATTCACGAACATGTTTTAAGAAATTGCTATTATCAGTGAGACATACCTTGAAGAGCAGAGACGTCGATCATCGGAGAGACAGTGAGAAGCCAGTGCGAAGCTGGAAATGAAATGGAATTAGGAGAAAAAGGTGATGATGATTCAAGGAAATGGTCGGAAAAAGACCATTGACGAATTGGAAATGAGACGAAAGATGGGGAAGAAGGAGAAAGGAGGAGGTGAACATGAACAGATAGAGAAGGCAAGAAAATGGAGATGGTAATTGGCTCAATCGACA</canonical>
            <polymorphic>TATGATAATTATTTTATCAGCTGGTTATGTTTTGATATCTTTTACATTAACCGAGATATAAGGGTTCAAAGTTGGCGGTTGGGGGGCTTTCTATTAGAGTGTCTAGGTTGAATTCCGAGGCTTGCAAATTGTAATTTTGAATCGATAGATTCAGAATTTGTGTTGTGATTTGAAATGTTCCAGAAAATCTTTTTCTCAATTCACAATTCCCAGAATTTTCAGAATCATCATTCCCAAAAATTTACAGAATTTGGATGACCGTAAAACATGTATTATAAGGGCCCCCACATTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATAGCAAAAATGTGTCAACTGGCAAAACATTTCTGATATTATGATAAACAATTTTCAGTTAACAAATCTTTGGTATATTTCACAGGAATCGAGATAATTGAGGTCAAAGTTAAAATTTAGGGGTCCCTTCTATTACAGGTTTTACAGTAATAAACTGTTAAAAATGAGTAYCAGGTTCTTAACTTCGCATGTAAACGACAATATTGAACCGGAAACTTCATTCTATACAGTACAAAGTCAAAGCAAAACCCGAAAATTCTTGATTCTTGCGGTTCCTTATCACCTCGAAACGAAAAAACCGCCAAACAACATGTGAAATCGTAAAACTTCAAAAGAAAGAATTCAAAGAATGAAAGCATCCATAAAGTCTCATTGTCTCATATCACAAGGCAACATTCACGAACATGTTTTAAGAAATTGCTATTATCAGTGAGACATACCTTGAAGAGCAGAGACGTCGATCATCGGAGAGACAGTGAGAAGCCAGTGCGAAGCTGGAAATGAAATGGAATTAGGAGAAAAAGGTGATGATGATTCAAGGAAATGGTCGGAAAAAGACCATTGACGAATTGGAAATGAGACGAAAGATGGGGAAGAAGGAGAAAGGAGGAGGTGAACATGAACAGATAGAGAAGGCAAGAAAATGGAGATGGTAATTGGCTCAATCGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCATTCCCAAAAATTTACAGA</pcr_primer_p1>
		<pcr_primer_p2>TATAGAATGAAGTTTCCGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>ATCATTCCCAAAAATTTACAGAATTTGGATGACCGTAAAACATGTATTATAAGGGCCCCCACATTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATAGCAAAAATGTGTCAACTGGCAAAACATTTCTGATATTATGATAAACAATTTTCAGTTAACAAATCTTTGGTATATTTCACAGGAATCGAGATAATTGAGGTCAAAGTTAAAATTTAGGGGTCCCTTCTATTACAGGTTTTACAGTAATAAACTGTTAAAAATGAGTATCAGGTTCTTAACTTCGCATGTAAACGACAATATTGAACCGGAAACTTCATTCTATA</canonical_amplicon>
		<polymorphic_amplicon>ATCATTCCCAAAAATTTACAGAATTTGGATGACCGTAAAACATGTATTATAAGGGCCCCCACATTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATAGCAAAAATGTGTCAACTGGCAAAACATTTCTGATATTATGATAAACAATTTTCAGTTAACAAATCTTTGGTATATTTCACAGGAATCGAGATAATTGAGGTCAAAGTTAAAATTTAGGGGTCCCTTCTATTACAGGTTTTACAGTAATAAACTGTTAAAAATGAGTAYCAGGTTCTTAACTTCGCATGTAAACGACAATATTGAACCGGAAACTTCATTCTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29572</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>124971</contig_pos>
        <strand>+</strand>
        <context>AACTTCGCAT[A/G]TAAAYRACAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTACAGTAATAAACTGTTAAAAATGAGTATCAGGTTCTTAACTTCGCAT</left_flank>
        <right_flank>TAAACGACAATATTGAACCGGAAACTTCATTCTATACAGTACAAAGTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGGTTATGTTTTGATATCTTTTACATTAACCGAGATATAAGGGTTCAAAGTTGGCGGTTGGGGGGCTTTCTATTAGAGTGTCTAGGTTGAATTCCGAGGCTTGCAAATTGTAATTTTGAATCGATAGATTCAGAATTTGTGTTGTGATTTGAAATGTTCCAGAAAATCTTTTTCTCAATTCACAATTCCCAGAATTTTCAGAATCATCATTCCCAAAAATTTACAGAATTTGGATGACCGTAAAACATGTATTATAAGGGCCCCCACATTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATAGCAAAAATGTGTCAACTGGCAAAACATTTCTGATATTATGATAAACAATTTTCAGTTAACAAATCTTTGGTATATTTCACAGGAATCGAGATAATTGAGGTCAAAGTTAAAATTTAGGGGTCCCTTCTATTACAGGTTTTACAGTAATAAACTGTTAAAAATGAGTATCAGGTTCTTAACTTCGCATGTAAACGACAATATTGAACCGGAAACTTCATTCTATACAGTACAAAGTCAAAGCAAAACCCGAAAATTCTTGATTCTTGCGGTTCCTTATCACCTCGAAACGAAAAAACCGCCAAACAACATGTGAAATCGTAAAACTTCAAAAGAAAGAATTCAAAGAATGAAAGCATCCATAAAGTCTCATTGTCTCATATCACAAGGCAACATTCACGAACATGTTTTAAGAAATTGCTATTATCAGTGAGACATACCTTGAAGAGCAGAGACGTCGATCATCGGAGAGACAGTGAGAAGCCAGTGCGAAGCTGGAAATGAAATGGAATTAGGAGAAAAAGGTGATGATGATTCAAGGAAATGGTCGGAAAAAGACCATTGACGAATTGGAAATGAGACGAAAGATGGGGAAGAAGGAGAAAGGAGGAGGTGAACATGAACAGATAGAGAAGGCAAGAAAATGGAGATGGTAATTGGCTCAATCGACAAGATAGAAATGCAGGACACA</canonical>
            <polymorphic>CTGGTTATGTTTTGATATCTTTTACATTAACCGAGATATAAGGGTTCAAAGTTGGCGGTTGGGGGGCTTTCTATTAGAGTGTCTAGGTTGAATTCCGAGGCTTGCAAATTGTAATTTTGAATCGATAGATTCAGAATTTGTGTTGTGATTTGAAATGTTCCAGAAAATCTTTTTCTCAATTCACAATTCCCAGAATTTTCAGAATCATCATTCCCAAAAATTTACAGAATTTGGATGACCGTAAAACATGTATTATAAGGGCCCCCACATTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATAGCAAAAATGTGTCAACTGGCAAAACATTTCTGATATTATGATAAACAATTTTCAGTTAACAAATCTTTGGTATATTTCACAGGAATCGAGATAATTGAGGTCAAAGTTAAAATTTAGGGGTCCCTTCTATTACAGGTTTTACAGTAATAAACTGTTAAAAATGAGTATCAGGTTCTTAACTTCGCATRTAAACGACAATATTGAACCGGAAACTTCATTCTATACAGTACAAAGTCAAAGCAAAACCCGAAAATTCTTGATTCTTGCGGTTCCTTATCACCTCGAAACGAAAAAACCGCCAAACAACATGTGAAATCGTAAAACTTCAAAAGAAAGAATTCAAAGAATGAAAGCATCCATAAAGTCTCATTGTCTCATATCACAAGGCAACATTCACGAACATGTTTTAAGAAATTGCTATTATCAGTGAGACATACCTTGAAGAGCAGAGACGTCGATCATCGGAGAGACAGTGAGAAGCCAGTGCGAAGCTGGAAATGAAATGGAATTAGGAGAAAAAGGTGATGATGATTCAAGGAAATGGTCGGAAAAAGACCATTGACGAATTGGAAATGAGACGAAAGATGGGGAAGAAGGAGAAAGGAGGAGGTGAACATGAACAGATAGAGAAGGCAAGAAAATGGAGATGGTAATTGGCTCAATCGACAAGATAGAAATGCAGGACACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>284 250 250 122 94</canonical_bands>
                <polymorphic_bands>372 284 250 94</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>250 247 214 122 94 73</canonical_bands>
                <polymorphic_bands>372 247 214 94 73</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>422 325 133 76 44</canonical_bands>
                <polymorphic_bands>555 325 76 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCATTCCCAAAAATTTACAGA</pcr_primer_p1>
		<pcr_primer_p2>ATCAAGAATTTTCGGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>367</pcr_amplicon_size>
		<canonical_amplicon>ATCATTCCCAAAAATTTACAGAATTTGGATGACCGTAAAACATGTATTATAAGGGCCCCCACATTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATAGCAAAAATGTGTCAACTGGCAAAACATTTCTGATATTATGATAAACAATTTTCAGTTAACAAATCTTTGGTATATTTCACAGGAATCGAGATAATTGAGGTCAAAGTTAAAATTTAGGGGTCCCTTCTATTACAGGTTTTACAGTAATAAACTGTTAAAAATGAGTATCAGGTTCTTAACTTCGCATGTAAACGACAATATTGAACCGGAAACTTCATTCTATACAGTACAAAGTCAAAGCAAAACCCGAAAATTCTTGAT</canonical_amplicon>
		<polymorphic_amplicon>ATCATTCCCAAAAATTTACAGAATTTGGATGACCGTAAAACATGTATTATAAGGGCCCCCACATTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATAGCAAAAATGTGTCAACTGGCAAAACATTTCTGATATTATGATAAACAATTTTCAGTTAACAAATCTTTGGTATATTTCACAGGAATCGAGATAATTGAGGTCAAAGTTAAAATTTAGGGGTCCCTTCTATTACAGGTTTTACAGTAATAAACTGTTAAAAATGAGTATCAGGTTCTTAACTTCGCATRTAAACGACAATATTGAACCGGAAACTTCATTCTATACAGTACAAAGTCAAAGCAAAACCCGAAAATTCTTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29573</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>124976</contig_pos>
        <strand>+</strand>
        <context>CGCATRTAAA[C/T]RACAATATTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTAATAAACTGTTAAAAATGAGTATCAGGTTCTTAACTTCGCATGTAAA</left_flank>
        <right_flank>GACAATATTGAACCGGAAACTTCATTCTATACAGTACAAAGTCAAAGCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGTTTTGATATCTTTTACATTAACCGAGATATAAGGGTTCAAAGTTGGCGGTTGGGGGGCTTTCTATTAGAGTGTCTAGGTTGAATTCCGAGGCTTGCAAATTGTAATTTTGAATCGATAGATTCAGAATTTGTGTTGTGATTTGAAATGTTCCAGAAAATCTTTTTCTCAATTCACAATTCCCAGAATTTTCAGAATCATCATTCCCAAAAATTTACAGAATTTGGATGACCGTAAAACATGTATTATAAGGGCCCCCACATTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATAGCAAAAATGTGTCAACTGGCAAAACATTTCTGATATTATGATAAACAATTTTCAGTTAACAAATCTTTGGTATATTTCACAGGAATCGAGATAATTGAGGTCAAAGTTAAAATTTAGGGGTCCCTTCTATTACAGGTTTTACAGTAATAAACTGTTAAAAATGAGTATCAGGTTCTTAACTTCGCATGTAAACGACAATATTGAACCGGAAACTTCATTCTATACAGTACAAAGTCAAAGCAAAACCCGAAAATTCTTGATTCTTGCGGTTCCTTATCACCTCGAAACGAAAAAACCGCCAAACAACATGTGAAATCGTAAAACTTCAAAAGAAAGAATTCAAAGAATGAAAGCATCCATAAAGTCTCATTGTCTCATATCACAAGGCAACATTCACGAACATGTTTTAAGAAATTGCTATTATCAGTGAGACATACCTTGAAGAGCAGAGACGTCGATCATCGGAGAGACAGTGAGAAGCCAGTGCGAAGCTGGAAATGAAATGGAATTAGGAGAAAAAGGTGATGATGATTCAAGGAAATGGTCGGAAAAAGACCATTGACGAATTGGAAATGAGACGAAAGATGGGGAAGAAGGAGAAAGGAGGAGGTGAACATGAACAGATAGAGAAGGCAAGAAAATGGAGATGGTAATTGGCTCAATCGACAAGATAGAAATGCAGGACACAATTTG</canonical>
            <polymorphic>TATGTTTTGATATCTTTTACATTAACCGAGATATAAGGGTTCAAAGTTGGCGGTTGGGGGGCTTTCTATTAGAGTGTCTAGGTTGAATTCCGAGGCTTGCAAATTGTAATTTTGAATCGATAGATTCAGAATTTGTGTTGTGATTTGAAATGTTCCAGAAAATCTTTTTCTCAATTCACAATTCCCAGAATTTTCAGAATCATCATTCCCAAAAATTTACAGAATTTGGATGACCGTAAAACATGTATTATAAGGGCCCCCACATTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATAGCAAAAATGTGTCAACTGGCAAAACATTTCTGATATTATGATAAACAATTTTCAGTTAACAAATCTTTGGTATATTTCACAGGAATCGAGATAATTGAGGTCAAAGTTAAAATTTAGGGGTCCCTTCTATTACAGGTTTTACAGTAATAAACTGTTAAAAATGAGTATCAGGTTCTTAACTTCGCATGTAAAYGACAATATTGAACCGGAAACTTCATTCTATACAGTACAAAGTCAAAGCAAAACCCGAAAATTCTTGATTCTTGCGGTTCCTTATCACCTCGAAACGAAAAAACCGCCAAACAACATGTGAAATCGTAAAACTTCAAAAGAAAGAATTCAAAGAATGAAAGCATCCATAAAGTCTCATTGTCTCATATCACAAGGCAACATTCACGAACATGTTTTAAGAAATTGCTATTATCAGTGAGACATACCTTGAAGAGCAGAGACGTCGATCATCGGAGAGACAGTGAGAAGCCAGTGCGAAGCTGGAAATGAAATGGAATTAGGAGAAAAAGGTGATGATGATTCAAGGAAATGGTCGGAAAAAGACCATTGACGAATTGGAAATGAGACGAAAGATGGGGAAGAAGGAGAAAGGAGGAGGTGAACATGAACAGATAGAGAAGGCAAGAAAATGGAGATGGTAATTGGCTCAATCGACAAGATAGAAATGCAGGACACAATTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>422 320 133 81 44</canonical_bands>
                <polymorphic_bands>555 320 81 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCATTCCCAAAAATTTACAGA</pcr_primer_p1>
		<pcr_primer_p2>ATCAAGAATTTTCGGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>367</pcr_amplicon_size>
		<canonical_amplicon>ATCATTCCCAAAAATTTACAGAATTTGGATGACCGTAAAACATGTATTATAAGGGCCCCCACATTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATAGCAAAAATGTGTCAACTGGCAAAACATTTCTGATATTATGATAAACAATTTTCAGTTAACAAATCTTTGGTATATTTCACAGGAATCGAGATAATTGAGGTCAAAGTTAAAATTTAGGGGTCCCTTCTATTACAGGTTTTACAGTAATAAACTGTTAAAAATGAGTATCAGGTTCTTAACTTCGCATGTAAACGACAATATTGAACCGGAAACTTCATTCTATACAGTACAAAGTCAAAGCAAAACCCGAAAATTCTTGAT</canonical_amplicon>
		<polymorphic_amplicon>ATCATTCCCAAAAATTTACAGAATTTGGATGACCGTAAAACATGTATTATAAGGGCCCCCACATTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATAGCAAAAATGTGTCAACTGGCAAAACATTTCTGATATTATGATAAACAATTTTCAGTTAACAAATCTTTGGTATATTTCACAGGAATCGAGATAATTGAGGTCAAAGTTAAAATTTAGGGGTCCCTTCTATTACAGGTTTTACAGTAATAAACTGTTAAAAATGAGTATCAGGTTCTTAACTTCGCATGTAAAYGACAATATTGAACCGGAAACTTCATTCTATACAGTACAAAGTCAAAGCAAAACCCGAAAATTCTTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29574</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>124977</contig_pos>
        <strand>+</strand>
        <context>GCATRTAAAY[A/G]ACAATATTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAATAAACTGTTAAAAATGAGTATCAGGTTCTTAACTTCGCATGTAAAC</left_flank>
        <right_flank>ACAATATTGAACCGGAAACTTCATTCTATACAGTACAAAGTCAAAGCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTTTTGATATCTTTTACATTAACCGAGATATAAGGGTTCAAAGTTGGCGGTTGGGGGGCTTTCTATTAGAGTGTCTAGGTTGAATTCCGAGGCTTGCAAATTGTAATTTTGAATCGATAGATTCAGAATTTGTGTTGTGATTTGAAATGTTCCAGAAAATCTTTTTCTCAATTCACAATTCCCAGAATTTTCAGAATCATCATTCCCAAAAATTTACAGAATTTGGATGACCGTAAAACATGTATTATAAGGGCCCCCACATTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATAGCAAAAATGTGTCAACTGGCAAAACATTTCTGATATTATGATAAACAATTTTCAGTTAACAAATCTTTGGTATATTTCACAGGAATCGAGATAATTGAGGTCAAAGTTAAAATTTAGGGGTCCCTTCTATTACAGGTTTTACAGTAATAAACTGTTAAAAATGAGTATCAGGTTCTTAACTTCGCATGTAAACGACAATATTGAACCGGAAACTTCATTCTATACAGTACAAAGTCAAAGCAAAACCCGAAAATTCTTGATTCTTGCGGTTCCTTATCACCTCGAAACGAAAAAACCGCCAAACAACATGTGAAATCGTAAAACTTCAAAAGAAAGAATTCAAAGAATGAAAGCATCCATAAAGTCTCATTGTCTCATATCACAAGGCAACATTCACGAACATGTTTTAAGAAATTGCTATTATCAGTGAGACATACCTTGAAGAGCAGAGACGTCGATCATCGGAGAGACAGTGAGAAGCCAGTGCGAAGCTGGAAATGAAATGGAATTAGGAGAAAAAGGTGATGATGATTCAAGGAAATGGTCGGAAAAAGACCATTGACGAATTGGAAATGAGACGAAAGATGGGGAAGAAGGAGAAAGGAGGAGGTGAACATGAACAGATAGAGAAGGCAAGAAAATGGAGATGGTAATTGGCTCAATCGACAAGATAGAAATGCAGGACACAATTTGA</canonical>
            <polymorphic>ATGTTTTGATATCTTTTACATTAACCGAGATATAAGGGTTCAAAGTTGGCGGTTGGGGGGCTTTCTATTAGAGTGTCTAGGTTGAATTCCGAGGCTTGCAAATTGTAATTTTGAATCGATAGATTCAGAATTTGTGTTGTGATTTGAAATGTTCCAGAAAATCTTTTTCTCAATTCACAATTCCCAGAATTTTCAGAATCATCATTCCCAAAAATTTACAGAATTTGGATGACCGTAAAACATGTATTATAAGGGCCCCCACATTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATAGCAAAAATGTGTCAACTGGCAAAACATTTCTGATATTATGATAAACAATTTTCAGTTAACAAATCTTTGGTATATTTCACAGGAATCGAGATAATTGAGGTCAAAGTTAAAATTTAGGGGTCCCTTCTATTACAGGTTTTACAGTAATAAACTGTTAAAAATGAGTATCAGGTTCTTAACTTCGCATGTAAACRACAATATTGAACCGGAAACTTCATTCTATACAGTACAAAGTCAAAGCAAAACCCGAAAATTCTTGATTCTTGCGGTTCCTTATCACCTCGAAACGAAAAAACCGCCAAACAACATGTGAAATCGTAAAACTTCAAAAGAAAGAATTCAAAGAATGAAAGCATCCATAAAGTCTCATTGTCTCATATCACAAGGCAACATTCACGAACATGTTTTAAGAAATTGCTATTATCAGTGAGACATACCTTGAAGAGCAGAGACGTCGATCATCGGAGAGACAGTGAGAAGCCAGTGCGAAGCTGGAAATGAAATGGAATTAGGAGAAAAAGGTGATGATGATTCAAGGAAATGGTCGGAAAAAGACCATTGACGAATTGGAAATGAGACGAAAGATGGGGAAGAAGGAGAAAGGAGGAGGTGAACATGAACAGATAGAGAAGGCAAGAAAATGGAGATGGTAATTGGCTCAATCGACAAGATAGAAATGCAGGACACAATTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCATTCCCAAAAATTTACAGA</pcr_primer_p1>
		<pcr_primer_p2>ATCAAGAATTTTCGGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>367</pcr_amplicon_size>
		<canonical_amplicon>ATCATTCCCAAAAATTTACAGAATTTGGATGACCGTAAAACATGTATTATAAGGGCCCCCACATTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATAGCAAAAATGTGTCAACTGGCAAAACATTTCTGATATTATGATAAACAATTTTCAGTTAACAAATCTTTGGTATATTTCACAGGAATCGAGATAATTGAGGTCAAAGTTAAAATTTAGGGGTCCCTTCTATTACAGGTTTTACAGTAATAAACTGTTAAAAATGAGTATCAGGTTCTTAACTTCGCATGTAAACGACAATATTGAACCGGAAACTTCATTCTATACAGTACAAAGTCAAAGCAAAACCCGAAAATTCTTGAT</canonical_amplicon>
		<polymorphic_amplicon>ATCATTCCCAAAAATTTACAGAATTTGGATGACCGTAAAACATGTATTATAAGGGCCCCCACATTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATAGCAAAAATGTGTCAACTGGCAAAACATTTCTGATATTATGATAAACAATTTTCAGTTAACAAATCTTTGGTATATTTCACAGGAATCGAGATAATTGAGGTCAAAGTTAAAATTTAGGGGTCCCTTCTATTACAGGTTTTACAGTAATAAACTGTTAAAAATGAGTATCAGGTTCTTAACTTCGCATGTAAACRACAATATTGAACCGGAAACTTCATTCTATACAGTACAAAGTCAAAGCAAAACCCGAAAATTCTTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29575</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>125018</contig_pos>
        <strand>+</strand>
        <context>CAGTACAAAG[G/T]CAAAGCAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATGTAAACGACAATATTGAACCGGAAACTTCATTCTATACAGTACAAAG</left_flank>
        <right_flank>CAAAGCAAAACCCGAAAATTCTTGATTCTTGCGGTTCCTTATCACCTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTTGGCGGTTGGGGGGCTTTCTATTAGAGTGTCTAGGTTGAATTCCGAGGCTTGCAAATTGTAATTTTGAATCGATAGATTCAGAATTTGTGTTGTGATTTGAAATGTTCCAGAAAATCTTTTTCTCAATTCACAATTCCCAGAATTTTCAGAATCATCATTCCCAAAAATTTACAGAATTTGGATGACCGTAAAACATGTATTATAAGGGCCCCCACATTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATAGCAAAAATGTGTCAACTGGCAAAACATTTCTGATATTATGATAAACAATTTTCAGTTAACAAATCTTTGGTATATTTCACAGGAATCGAGATAATTGAGGTCAAAGTTAAAATTTAGGGGTCCCTTCTATTACAGGTTTTACAGTAATAAACTGTTAAAAATGAGTATCAGGTTCTTAACTTCGCATGTAAACGACAATATTGAACCGGAAACTTCATTCTATACAGTACAAAGTCAAAGCAAAACCCGAAAATTCTTGATTCTTGCGGTTCCTTATCACCTCGAAACGAAAAAACCGCCAAACAACATGTGAAATCGTAAAACTTCAAAAGAAAGAATTCAAAGAATGAAAGCATCCATAAAGTCTCATTGTCTCATATCACAAGGCAACATTCACGAACATGTTTTAAGAAATTGCTATTATCAGTGAGACATACCTTGAAGAGCAGAGACGTCGATCATCGGAGAGACAGTGAGAAGCCAGTGCGAAGCTGGAAATGAAATGGAATTAGGAGAAAAAGGTGATGATGATTCAAGGAAATGGTCGGAAAAAGACCATTGACGAATTGGAAATGAGACGAAAGATGGGGAAGAAGGAGAAAGGAGGAGGTGAACATGAACAGATAGAGAAGGCAAGAAAATGGAGATGGTAATTGGCTCAATCGACAAGATAGAAATGCAGGACACAATTTGAATAATGGCGAGAAAGAGAAGAGGATGATACACAATTTTTTT</canonical>
            <polymorphic>AAAGTTGGCGGTTGGGGGGCTTTCTATTAGAGTGTCTAGGTTGAATTCCGAGGCTTGCAAATTGTAATTTTGAATCGATAGATTCAGAATTTGTGTTGTGATTTGAAATGTTCCAGAAAATCTTTTTCTCAATTCACAATTCCCAGAATTTTCAGAATCATCATTCCCAAAAATTTACAGAATTTGGATGACCGTAAAACATGTATTATAAGGGCCCCCACATTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATAGCAAAAATGTGTCAACTGGCAAAACATTTCTGATATTATGATAAACAATTTTCAGTTAACAAATCTTTGGTATATTTCACAGGAATCGAGATAATTGAGGTCAAAGTTAAAATTTAGGGGTCCCTTCTATTACAGGTTTTACAGTAATAAACTGTTAAAAATGAGTATCAGGTTCTTAACTTCGCATGTAAACGACAATATTGAACCGGAAACTTCATTCTATACAGTACAAAGKCAAAGCAAAACCCGAAAATTCTTGATTCTTGCGGTTCCTTATCACCTCGAAACGAAAAAACCGCCAAACAACATGTGAAATCGTAAAACTTCAAAAGAAAGAATTCAAAGAATGAAAGCATCCATAAAGTCTCATTGTCTCATATCACAAGGCAACATTCACGAACATGTTTTAAGAAATTGCTATTATCAGTGAGACATACCTTGAAGAGCAGAGACGTCGATCATCGGAGAGACAGTGAGAAGCCAGTGCGAAGCTGGAAATGAAATGGAATTAGGAGAAAAAGGTGATGATGATTCAAGGAAATGGTCGGAAAAAGACCATTGACGAATTGGAAATGAGACGAAAGATGGGGAAGAAGGAGAAAGGAGGAGGTGAACATGAACAGATAGAGAAGGCAAGAAAATGGAGATGGTAATTGGCTCAATCGACAAGATAGAAATGCAGGACACAATTTGAATAATGGCGAGAAAGAGAAGAGGATGATACACAATTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCATTCCCAAAAATTTACAGA</pcr_primer_p1>
		<pcr_primer_p2>TTTCGTTTCGAGGTGATAAG</pcr_primer_p2>
		<pcr_amplicon_size>398</pcr_amplicon_size>
		<canonical_amplicon>ATCATTCCCAAAAATTTACAGAATTTGGATGACCGTAAAACATGTATTATAAGGGCCCCCACATTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATAGCAAAAATGTGTCAACTGGCAAAACATTTCTGATATTATGATAAACAATTTTCAGTTAACAAATCTTTGGTATATTTCACAGGAATCGAGATAATTGAGGTCAAAGTTAAAATTTAGGGGTCCCTTCTATTACAGGTTTTACAGTAATAAACTGTTAAAAATGAGTATCAGGTTCTTAACTTCGCATGTAAACGACAATATTGAACCGGAAACTTCATTCTATACAGTACAAAGTCAAAGCAAAACCCGAAAATTCTTGATTCTTGCGGTTCCTTATCACCTCGAAACGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATCATTCCCAAAAATTTACAGAATTTGGATGACCGTAAAACATGTATTATAAGGGCCCCCACATTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATAGCAAAAATGTGTCAACTGGCAAAACATTTCTGATATTATGATAAACAATTTTCAGTTAACAAATCTTTGGTATATTTCACAGGAATCGAGATAATTGAGGTCAAAGTTAAAATTTAGGGGTCCCTTCTATTACAGGTTTTACAGTAATAAACTGTTAAAAATGAGTATCAGGTTCTTAACTTCGCATGTAAACGACAATATTGAACCGGAAACTTCATTCTATACAGTACAAAGKCAAAGCAAAACCCGAAAATTCTTGATTCTTGCGGTTCCTTATCACCTCGAAACGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29576</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>125051</contig_pos>
        <strand>+</strand>
        <context>TGATTCTTGC[G/T]GTTCCTTATC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCTATACAGTACAAAGTCAAAGCAAAACCCGAAAATTCTTGATTCTTGC</left_flank>
        <right_flank>GTTCCTTATCACCTCGAAACGAAAAAACCGCCAAACAACATGTGAAATCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCTAGGTTGAATTCCGAGGCTTGCAAATTGTAATTTTGAATCGATAGATTCAGAATTTGTGTTGTGATTTGAAATGTTCCAGAAAATCTTTTTCTCAATTCACAATTCCCAGAATTTTCAGAATCATCATTCCCAAAAATTTACAGAATTTGGATGACCGTAAAACATGTATTATAAGGGCCCCCACATTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATAGCAAAAATGTGTCAACTGGCAAAACATTTCTGATATTATGATAAACAATTTTCAGTTAACAAATCTTTGGTATATTTCACAGGAATCGAGATAATTGAGGTCAAAGTTAAAATTTAGGGGTCCCTTCTATTACAGGTTTTACAGTAATAAACTGTTAAAAATGAGTATCAGGTTCTTAACTTCGCATGTAAACGACAATATTGAACCGGAAACTTCATTCTATACAGTACAAAGTCAAAGCAAAACCCGAAAATTCTTGATTCTTGCGGTTCCTTATCACCTCGAAACGAAAAAACCGCCAAACAACATGTGAAATCGTAAAACTTCAAAAGAAAGAATTCAAAGAATGAAAGCATCCATAAAGTCTCATTGTCTCATATCACAAGGCAACATTCACGAACATGTTTTAAGAAATTGCTATTATCAGTGAGACATACCTTGAAGAGCAGAGACGTCGATCATCGGAGAGACAGTGAGAAGCCAGTGCGAAGCTGGAAATGAAATGGAATTAGGAGAAAAAGGTGATGATGATTCAAGGAAATGGTCGGAAAAAGACCATTGACGAATTGGAAATGAGACGAAAGATGGGGAAGAAGGAGAAAGGAGGAGGTGAACATGAACAGATAGAGAAGGCAAGAAAATGGAGATGGTAATTGGCTCAATCGACAAGATAGAAATGCAGGACACAATTTGAATAATGGCGAGAAAGAGAAGAGGATGATACACAATTTTTTTGCCGTTTCGCTCTGAATATGAAGAAAAAGAAGA</canonical>
            <polymorphic>GTCTAGGTTGAATTCCGAGGCTTGCAAATTGTAATTTTGAATCGATAGATTCAGAATTTGTGTTGTGATTTGAAATGTTCCAGAAAATCTTTTTCTCAATTCACAATTCCCAGAATTTTCAGAATCATCATTCCCAAAAATTTACAGAATTTGGATGACCGTAAAACATGTATTATAAGGGCCCCCACATTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATGCAAGATAGCAAAAATGTGTCAACTGGCAAAACATTTCTGATATTATGATAAACAATTTTCAGTTAACAAATCTTTGGTATATTTCACAGGAATCGAGATAATTGAGGTCAAAGTTAAAATTTAGGGGTCCCTTCTATTACAGGTTTTACAGTAATAAACTGTTAAAAATGAGTATCAGGTTCTTAACTTCGCATGTAAACGACAATATTGAACCGGAAACTTCATTCTATACAGTACAAAGTCAAAGCAAAACCCGAAAATTCTTGATTCTTGCKGTTCCTTATCACCTCGAAACGAAAAAACCGCCAAACAACATGTGAAATCGTAAAACTTCAAAAGAAAGAATTCAAAGAATGAAAGCATCCATAAAGTCTCATTGTCTCATATCACAAGGCAACATTCACGAACATGTTTTAAGAAATTGCTATTATCAGTGAGACATACCTTGAAGAGCAGAGACGTCGATCATCGGAGAGACAGTGAGAAGCCAGTGCGAAGCTGGAAATGAAATGGAATTAGGAGAAAAAGGTGATGATGATTCAAGGAAATGGTCGGAAAAAGACCATTGACGAATTGGAAATGAGACGAAAGATGGGGAAGAAGGAGAAAGGAGGAGGTGAACATGAACAGATAGAGAAGGCAAGAAAATGGAGATGGTAATTGGCTCAATCGACAAGATAGAAATGCAGGACACAATTTGAATAATGGCGAGAAAGAGAAGAGGATGATACACAATTTTTTTGCCGTTTCGCTCTGAATATGAAGAAAAAGAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>498 181 171 150</canonical_bands>
                <polymorphic_bands>648 181 171</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACCGGAAACTTCATTCTATAC</pcr_primer_p1>
		<pcr_primer_p2>CTCTGCTCTTCAAGGTATGTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAACCGGAAACTTCATTCTATACAGTACAAAGTCAAAGCAAAACCCGAAAATTCTTGATTCTTGCGGTTCCTTATCACCTCGAAACGAAAAAACCGCCAAACAACATGTGAAATCGTAAAACTTCAAAAGAAAGAATTCAAAGAATGAAAGCATCCATAAAGTCTCATTGTCTCATATCACAAGGCAACATTCACGAACATGTTTTAAGAAATTGCTATTATCAGTGAGACATACCTTGAAGAGCAGAG</canonical_amplicon>
		<polymorphic_amplicon>GAACCGGAAACTTCATTCTATACAGTACAAAGTCAAAGCAAAACCCGAAAATTCTTGATTCTTGCKGTTCCTTATCACCTCGAAACGAAAAAACCGCCAAACAACATGTGAAATCGTAAAACTTCAAAAGAAAGAATTCAAAGAATGAAAGCATCCATAAAGTCTCATTGTCTCATATCACAAGGCAACATTCACGAACATGTTTTAAGAAATTGCTATTATCAGTGAGACATACCTTGAAGAGCAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29577</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>159712</contig_pos>
        <strand>+</strand>
        <context>TATCATTCTT[G/T]GGGGGTGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTAAATAGCGAGAGAAACCAAGGTTTTTCGGCAGGCGGCGTATCATTCTT</left_flank>
        <right_flank>GGGGGTGAATTCAGCCCAAAAAAGGACAAATTTGCATACAATGTTCAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAGGGCTTATGTGCGCGACGAGAAAAATGATAATCCAGTGTAGCAGCAAGAAGAGACATTTCTTTGCCCACGAGAGATAGGAGAGTTAGACAGAGCGAAAAGGAGTAAAGTAAAATAGAGAAAAGAATGGAACCAATGATTCGATTTGTGAGTCTGTTGTGTTGAAAGAACCAACGAGTCGGCAGAGCTTTTGACAAGACAAAACACTTGTGTTCTTTTTTCTTCGCTAAGCGACACACGGTGTGGTGGTCCGTTTTTCTGCAGAATGCGACACTCTTGAATTTTGAATGAGACGAAAAAAGAAGCGACTGCCTCGATGTGCATCTCGTCCTAATTCACCACACACGCACATTACTTTCTGGGCGCAGAGTCGTCGCCAAATTTTTATGAAAACATTGCCCAAATAAGTATCCTAATAATCTTTGGAGCCTTCTAGCCGAATCGTGACGTAAATAGCGAGAGAAACCAAGGTTTTTCGGCAGGCGGCGTATCATTCTTGGGGGGTGAATTCAGCCCAAAAAAGGACAAATTTGCATACAATGTTCAGTTCTTTTCATGACAATACGATGTGATTTTTGAATAGAATAGACGAAAATTTGGAAAATGTTTGAGAAAAAAAACCTAATTTTTAGAATTTTCGAGATTTTGTTCATCATAAAATTTAGTGCAATTTGATCGCTGTTATCTCTAGAACCTGTTTTTCATAGGACTTGATTGCCGGAGTGGCTCGAACGAGGCTAAAGTCTGAAATAGTACGATTTAGCCGCTCCGCATCGTAGCGACGGATTGCAAGTTCTCAGGTGCCAGTTCTTTTGTTGTAATTCGACAATAATTTTCTTATTTTTTCAAGCAAAATGCTGACTTTCAGCAGTAAATCTCTATTTTTTGCCATTTTTTCATCATAAAAATTGATGCATCCGCAACTTTGCGTAAGCTGCAATGCAGAAGATTACTGTAGGCGTCTAATCGTACGCGCAAACTTCCCATTTTTTTCTCAAT</canonical>
            <polymorphic>GCAGGGCTTATGTGCGCGACGAGAAAAATGATAATCCAGTGTAGCAGCAAGAAGAGACATTTCTTTGCCCACGAGAGATAGGAGAGTTAGACAGAGCGAAAAGGAGTAAAGTAAAATAGAGAAAAGAATGGAACCAATGATTCGATTTGTGAGTCTGTTGTGTTGAAAGAACCAACGAGTCGGCAGAGCTTTTGACAAGACAAAACACTTGTGTTCTTTTTTCTTCGCTAAGCGACACACGGTGTGGTGGTCCGTTTTTCTGCAGAATGCGACACTCTTGAATTTTGAATGAGACGAAAAAAGAAGCGACTGCCTCGATGTGCATCTCGTCCTAATTCACCACACACGCACATTACTTTCTGGGCGCAGAGTCGTCGCCAAATTTTTATGAAAACATTGCCCAAATAAGTATCCTAATAATCTTTGGAGCCTTCTAGCCGAATCGTGACGTAAATAGCGAGAGAAACCAAGGTTTTTCGGCAGGCGGCGTATCATTCTTKGGGGGTGAATTCAGCCCAAAAAAGGACAAATTTGCATACAATGTTCAGTTCTTTTCATGACAATACGATGTGATTTTTGAATAGAATAGACGAAAATTTGGAAAATGTTTGAGAAAAAAAACCTAATTTTTAGAATTTTCGAGATTTTGTTCATCATAAAATTTAGTGCAATTTGATCGCTGTTATCTCTAGAACCTGTTTTTCATAGGACTTGATTGCCGGAGTGGCTCGAACGAGGCTAAAGTCTGAAATAGTACGATTTAGCCGCTCCGCATCGTAGCGACGGATTGCAAGTTCTCAGGTGCCAGTTCTTTTGTTGTAATTCGACAATAATTTTCTTATTTTTTCAAGCAAAATGCTGACTTTCAGCAGTAAATCTCTATTTTTTGCCATTTTTTCATCATAAAAATTGATGCATCCGCAACTTTGCGTAAGCTGCAATGCAGAAGATTACTGTAGGCGTCTAATCGTACGCGCAAACTTCCCATTTTTTTCTCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCCCAAATAAGTATCCTAATAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAATCTCGAAAATTCTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TGCCCAAATAAGTATCCTAATAATCTTTGGAGCCTTCTAGCCGAATCGTGACGTAAATAGCGAGAGAAACCAAGGTTTTTCGGCAGGCGGCGTATCATTCTTGGGGGGTGAATTCAGCCCAAAAAAGGACAAATTTGCATACAATGTTCAGTTCTTTTCATGACAATACGATGTGATTTTTGAATAGAATAGACGAAAATTTGGAAAATGTTTGAGAAAAAAAACCTAATTTTTAGAATTTTCGAGATTTTG</canonical_amplicon>
		<polymorphic_amplicon>TGCCCAAATAAGTATCCTAATAATCTTTGGAGCCTTCTAGCCGAATCGTGACGTAAATAGCGAGAGAAACCAAGGTTTTTCGGCAGGCGGCGTATCATTCTTKGGGGGTGAATTCAGCCCAAAAAAGGACAAATTTGCATACAATGTTCAGTTCTTTTCATGACAATACGATGTGATTTTTGAATAGAATAGACGAAAATTTGGAAAATGTTTGAGAAAAAAAACCTAATTTTTAGAATTTTCGAGATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29578</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>161009</contig_pos>
        <strand></strand>
        <context>AAGAAAAAAG[C/A]AAAAAATATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATTGAAAATGCAGGTTTGTAGTGCGCCTGGCAACAACAGCAAGAAAAAAG</left_flank>
        <right_flank>AAAAAATATAATGAGAGGGGAGAGAACAAGTGCGCACACACACTTATAAA</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTTCTCTCTCTGTGACTTCTTCTCGTCACCTATTCCAATTTACTTCGACATTAGACATCTCTCTCCTTCTAGCAGATAGCGAAAGAGACTGCAGAAAATTAAATGGTCGATAAATAAATACTTGGGAGTCAATTTAGTTGTTGTGTCGTCTTCTCATCATTTAGAACTTTCATAATATCAATTCTAGTCTAGAAGTTCTAGAATGTTCTTTTTTAAACATAAATCGGTTTTCAGATGGACTACACAATAACAGAAACGGACACTCTGGAACGAGTCGCCGCGTCACACGACTGCACAGTCGGCGAGCTCATGAAGCTCAACAAGATGGCGTCACGAATGGTGTTCCCTGGACAGAAGATCCTGGTGCCCTTGGCGAATTCTGACGACGTCTTCGATCCACCCTCTTCCACGTCTTCTTTGAAATCTTCTGGAAATCAAGTATCGGGGATTGAAAATGCAGGTTTGTAGTGCGCCTGGCAACAACAGCAAGAAAAAAGCAAAAAATATAATGAGAGGGGAGAGAACAAGTGCGCACACACACTTATAAAAGCTCATTTTGTCTTTATAAGTGCGCAGAGCACCAGGAAATGAGAAAAAAGAACAAAGATTGTTTCTTTTCAGAAGACGGAATACGAAAAGGTCCGGGCGGTGCGGTTCCAGCGCATGTCCGCCGGGGATCGTTCACCAAAACCCAGTCGGCGCCGATTCCACGTGGCAGTAACGAAGAAGCGGATACTGATTGTCTACAGAGGTTTCTGAAGATCAAAGTGAAACAAGTCACAGAATCCGATGGGACCGTATCGGGAACGCTGCTGGTGACACCGAATTGCTTGATGTTCGATCCGGATGTTTCGCATCCGTTGGTGAAGGAGAACGGACCGGATTTGTATGGAATGGTGGCGAAGTGAGGGATTTCATGAATTATTTTTTTGAAAAATCATAAAAATTGATTTCAGTATGGACGAAATTCAGTCAGTGTCGGTGTACAAAGAGATCAG</canonical>
            <polymorphic>TCCTTCTCTCTCTGTGACTTCTTCTCGTCACCTATTCCAATTTACTTCGACATTAGACATCTCTCTCCTTCTAGCAGATAGCGAAAGAGACTGCAGAAAATTAAATGGTCGATAAATAAATACTTGGGAGTCAATTTAGTTGTTGTGTCGTCTTCTCATCATTTAGAACTTTCATAATATCAATTCTAGTCTAGAAGTTCTAGAATGTTCTTTTTTAAACATAAATCGGTTTTCAGATGGACTACACAATAACAGAAACGGACACTCTGGAACGAGTCGCCGCGTCACACGACTGCACAGTCGGCGAGCTCATGAAGCTCAACAAGATGGCGTCACGAATGGTGTTCCCTGGACAGAAGATCCTGGTGCCCTTGGCGAATTCTGACGACGTCTTCGATCCACCCTCTTCCACGTCTTCTTTGAAATCTTCTGGAAATCAAGTATCGGGGATTGAAAATGCAGGTTTGTAGTGCGCCTGGCAACAACAGCAAGAAAAAAGMAAAAAATATAATGAGAGGGGAGAGAACAAGTGCGCACACACACTTATAAAAGCTCATTTTGTCTTTATAAGTGCGCAGAGCACCAGGAAATGAGAAAAAAGAACAAAGATTGTTTCTTTTCAGAAGACGGAATACGAAAAGGTCCGGGCGGTGCGGTTCCAGCGCATGTCCGCCGGGGATCGTTCACCAAAACCCAGTCGGCGCCGATTCCACGTGGCAGTAACGAAGAAGCGGATACTGATTGTCTACAGAGGTTTCTGAAGATCAAAGTGAAACAAGTCACAGAATCCGATGGGACCGTATCGGGAACGCTGCTGGTGACACCGAATTGCTTGATGTTCGATCCGGATGTTTCGCATCCGTTGGTGAAGGAGAACGGACCGGATTTGTATGGAATGGTGGCGAAGTGAGGGATTTCATGAATTATTTTTTTGAAAAATCATAAAAATTGATTTCAGTATGGACGAAATTCAGTCAGTGTCGGTGTACAAAGAGATCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCATGAAGCTCAACAAGATG</pcr_primer_p1>
		<pcr_primer_p2>AATGAGCTTTTATAAGTGTGTGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCATGAAGCTCAACAAGATGGCGTCACGAATGGTGTTCCCTGGACAGAAGATCCTGGTGCCCTTGGCGAATTCTGACGACGTCTTCGATCCACCCTCTTCCACGTCTTCTTTGAAATCTTCTGGAAATCAAGTATCGGGGATTGAAAATGCAGGTTTGTAGTGCGCCTGGCAACAACAGCAAGAAAAAAGCAAAAAATATAATGAGAGGGGAGAGAACAAGTGCGCACACACACTTATAAAAGCTCATT</canonical_amplicon>
		<polymorphic_amplicon>CTCATGAAGCTCAACAAGATGGCGTCACGAATGGTGTTCCCTGGACAGAAGATCCTGGTGCCCTTGGCGAATTCTGACGACGTCTTCGATCCACCCTCTTCCACGTCTTCTTTGAAATCTTCTGGAAATCAAGTATCGGGGATTGAAAATGCAGGTTTGTAGTGCGCCTGGCAACAACAGCAAGAAAAAAGMAAAAAATATAATGAGAGGGGAGAGAACAAGTGCGCACACACACTTATAAAAGCTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29579</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>168039</contig_pos>
        <strand></strand>
        <context>TATTGAAATT[T/A]MMAGTGCATA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATT</left_flank>
        <right_flank>CAAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAAGTCTCCAAGGTGACGTCTCCTTAGAAGACGTCACATTGAGAATCTGTATTTTGTGTTAGAATCGATCTTTCGATCACTTTATCGTATTTTCATCCCTTTTTGTGTCGTCTTGTTGGTTCAAGAAGAACCCATCACGGCCGAAAAGTTCTCTATCTGTATCTCGTGATGATTATTTTCTCTCATCTTCAAAGAATCATCGCTATCACCGTCGTCACGTCTTCAAAAGAAGTCTTCTTCTTCTTTCTTTTCGCTATCTCTTTTCAATCATCGACCATTGTCCACCTTCTGTTTTACACCCATCATTATCAGTTATCACTTCTTGGCAAAAAAGACAATGACCAGTTGCATGTCCTTTTTTGTGTCTTTGTTCATCGCTTGTATATTGGAAATGTTGTCAAACAGCTGACATTGTTTTAGTATCTGCTACAGTAACCCTCTTTTTTCTAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTTCAAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGATCACTTGATTCCTATCAT</canonical>
            <polymorphic>AGAAAGTCTCCAAGGTGACGTCTCCTTAGAAGACGTCACATTGAGAATCTGTATTTTGTGTTAGAATCGATCTTTCGATCACTTTATCGTATTTTCATCCCTTTTTGTGTCGTCTTGTTGGTTCAAGAAGAACCCATCACGGCCGAAAAGTTCTCTATCTGTATCTCGTGATGATTATTTTCTCTCATCTTCAAAGAATCATCGCTATCACCGTCGTCACGTCTTCAAAAGAAGTCTTCTTCTTCTTTCTTTTCGCTATCTCTTTTCAATCATCGACCATTGTCCACCTTCTGTTTTACACCCATCATTATCAGTTATCACTTCTTGGCAAAAAAGACAATGACCAGTTGCATGTCCTTTTTTGTGTCTTTGTTCATCGCTTGTATATTGGAAATGTTGTCAAACAGCTGACATTGTTTTAGTATCTGCTACAGTAACCCTCTTTTTTCTAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTWCAAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGATCACTTGATTCCTATCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>495 241 233 31</canonical_bands>
                <polymorphic_bands>736 233 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTGTTCATCGCTTGTATATT</pcr_primer_p1>
		<pcr_primer_p2>TGAAGGTAGAACAAAGGACCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTTGTTCATCGCTTGTATATTGGAAATGTTGTCAAACAGCTGACATTGTTTTAGTATCTGCTACAGTAACCCTCTTTTTTCTAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTTCAAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCA</canonical_amplicon>
		<polymorphic_amplicon>TCTTTGTTCATCGCTTGTATATTGGAAATGTTGTCAAACAGCTGACATTGTTTTAGTATCTGCTACAGTAACCCTCTTTTTTCTAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTWCAAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29580</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>168040</contig_pos>
        <strand></strand>
        <context>ATTGAAATTW[C/A]MAGTGCATAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTT</left_flank>
        <right_flank>AAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAGTCTCCAAGGTGACGTCTCCTTAGAAGACGTCACATTGAGAATCTGTATTTTGTGTTAGAATCGATCTTTCGATCACTTTATCGTATTTTCATCCCTTTTTGTGTCGTCTTGTTGGTTCAAGAAGAACCCATCACGGCCGAAAAGTTCTCTATCTGTATCTCGTGATGATTATTTTCTCTCATCTTCAAAGAATCATCGCTATCACCGTCGTCACGTCTTCAAAAGAAGTCTTCTTCTTCTTTCTTTTCGCTATCTCTTTTCAATCATCGACCATTGTCCACCTTCTGTTTTACACCCATCATTATCAGTTATCACTTCTTGGCAAAAAAGACAATGACCAGTTGCATGTCCTTTTTTGTGTCTTTGTTCATCGCTTGTATATTGGAAATGTTGTCAAACAGCTGACATTGTTTTAGTATCTGCTACAGTAACCCTCTTTTTTCTAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTTCAAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGATCACTTGATTCCTATCATC</canonical>
            <polymorphic>GAAAGTCTCCAAGGTGACGTCTCCTTAGAAGACGTCACATTGAGAATCTGTATTTTGTGTTAGAATCGATCTTTCGATCACTTTATCGTATTTTCATCCCTTTTTGTGTCGTCTTGTTGGTTCAAGAAGAACCCATCACGGCCGAAAAGTTCTCTATCTGTATCTCGTGATGATTATTTTCTCTCATCTTCAAAGAATCATCGCTATCACCGTCGTCACGTCTTCAAAAGAAGTCTTCTTCTTCTTTCTTTTCGCTATCTCTTTTCAATCATCGACCATTGTCCACCTTCTGTTTTACACCCATCATTATCAGTTATCACTTCTTGGCAAAAAAGACAATGACCAGTTGCATGTCCTTTTTTGTGTCTTTGTTCATCGCTTGTATATTGGAAATGTTGTCAAACAGCTGACATTGTTTTAGTATCTGCTACAGTAACCCTCTTTTTTCTAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTTMAAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGATCACTTGATTCCTATCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTGTTCATCGCTTGTATATT</pcr_primer_p1>
		<pcr_primer_p2>TGAAGGTAGAACAAAGGACCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTTGTTCATCGCTTGTATATTGGAAATGTTGTCAAACAGCTGACATTGTTTTAGTATCTGCTACAGTAACCCTCTTTTTTCTAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTTCAAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCA</canonical_amplicon>
		<polymorphic_amplicon>TCTTTGTTCATCGCTTGTATATTGGAAATGTTGTCAAACAGCTGACATTGTTTTAGTATCTGCTACAGTAACCCTCTTTTTTCTAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTTMAAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29581</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>168041</contig_pos>
        <strand></strand>
        <context>TTGAAATTWM[A/C]AGTGCATATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTTC</left_flank>
        <right_flank>AGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTCTCCAAGGTGACGTCTCCTTAGAAGACGTCACATTGAGAATCTGTATTTTGTGTTAGAATCGATCTTTCGATCACTTTATCGTATTTTCATCCCTTTTTGTGTCGTCTTGTTGGTTCAAGAAGAACCCATCACGGCCGAAAAGTTCTCTATCTGTATCTCGTGATGATTATTTTCTCTCATCTTCAAAGAATCATCGCTATCACCGTCGTCACGTCTTCAAAAGAAGTCTTCTTCTTCTTTCTTTTCGCTATCTCTTTTCAATCATCGACCATTGTCCACCTTCTGTTTTACACCCATCATTATCAGTTATCACTTCTTGGCAAAAAAGACAATGACCAGTTGCATGTCCTTTTTTGTGTCTTTGTTCATCGCTTGTATATTGGAAATGTTGTCAAACAGCTGACATTGTTTTAGTATCTGCTACAGTAACCCTCTTTTTTCTAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTTCAAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGATCACTTGATTCCTATCATCA</canonical>
            <polymorphic>AAAGTCTCCAAGGTGACGTCTCCTTAGAAGACGTCACATTGAGAATCTGTATTTTGTGTTAGAATCGATCTTTCGATCACTTTATCGTATTTTCATCCCTTTTTGTGTCGTCTTGTTGGTTCAAGAAGAACCCATCACGGCCGAAAAGTTCTCTATCTGTATCTCGTGATGATTATTTTCTCTCATCTTCAAAGAATCATCGCTATCACCGTCGTCACGTCTTCAAAAGAAGTCTTCTTCTTCTTTCTTTTCGCTATCTCTTTTCAATCATCGACCATTGTCCACCTTCTGTTTTACACCCATCATTATCAGTTATCACTTCTTGGCAAAAAAGACAATGACCAGTTGCATGTCCTTTTTTGTGTCTTTGTTCATCGCTTGTATATTGGAAATGTTGTCAAACAGCTGACATTGTTTTAGTATCTGCTACAGTAACCCTCTTTTTTCTAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTTCMAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGATCACTTGATTCCTATCATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTGTTCATCGCTTGTATATT</pcr_primer_p1>
		<pcr_primer_p2>TGAAGGTAGAACAAAGGACCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTTGTTCATCGCTTGTATATTGGAAATGTTGTCAAACAGCTGACATTGTTTTAGTATCTGCTACAGTAACCCTCTTTTTTCTAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTTCAAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCA</canonical_amplicon>
		<polymorphic_amplicon>TCTTTGTTCATCGCTTGTATATTGGAAATGTTGTCAAACAGCTGACATTGTTTTAGTATCTGCTACAGTAACCCTCTTTTTTCTAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTTCMAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29582</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>168290</contig_pos>
        <strand></strand>
        <context>ttgtcaactg[T/A]taaagtattc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTG</left_flank>
        <right_flank>TAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGCTATCTCTTTTCAATCATCGACCATTGTCCACCTTCTGTTTTACACCCATCATTATCAGTTATCACTTCTTGGCAAAAAAGACAATGACCAGTTGCATGTCCTTTTTTGTGTCTTTGTTCATCGCTTGTATATTGGAAATGTTGTCAAACAGCTGACATTGTTTTAGTATCTGCTACAGTAACCCTCTTTTTTCTAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTTCAAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGATCACTTGATTCCTATCATCATCTGACACCGCGAACCTATTCTGAACCCCCCATCAAAAAGAGATTCCAGGAGAGAACAACAACAAAATCATAAAGTGCCACGTGGCAAAAAGTTTTCAAAACATGCGCGGTCTCTTTAATGATGCAAATTGGGTAACAATTTCGAAATGTTTGAACTCTTCTCACTTTCCGATTGGTAATGATCATACTCGCCCCCACCTTTATACAGCCCGGTGCATCATCTCTAATCTTGTGTGCGCGCGCGTATTT</canonical>
            <polymorphic>TTCGCTATCTCTTTTCAATCATCGACCATTGTCCACCTTCTGTTTTACACCCATCATTATCAGTTATCACTTCTTGGCAAAAAAGACAATGACCAGTTGCATGTCCTTTTTTGTGTCTTTGTTCATCGCTTGTATATTGGAAATGTTGTCAAACAGCTGACATTGTTTTAGTATCTGCTACAGTAACCCTCTTTTTTCTAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTTCAAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGWTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGATCACTTGATTCCTATCATCATCTGACACCGCGAACCTATTCTGAACCCCCCATCAAAAAGAGATTCCAGGAGAGAACAACAACAAAATCATAAAGTGCCACGTGGCAAAAAGTTTTCAAAACATGCGCGGTCTCTTTAATGATGCAAATTGGGTAACAATTTCGAAATGTTTGAACTCTTCTCACTTTCCGATTGGTAATGATCATACTCGCCCCCACCTTTATACAGCCCGGTGCATCATCTCTAATCTTGTGTGCGCGCGCGTATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>406 226 182 96 90</canonical_bands>
                <polymorphic_bands>406 226 186 182</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>367 268 219 133 13</canonical_bands>
                <polymorphic_bands>635 219 133 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTTGTTCTACCTTCAGAGG</pcr_primer_p1>
		<pcr_primer_p2>AAAGATCAGAAGACTTTTTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>364</pcr_amplicon_size>
		<canonical_amplicon>CCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTT</canonical_amplicon>
		<polymorphic_amplicon>CCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGWTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29583</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>168324</contig_pos>
        <strand></strand>
        <context>caacatttta[C/T]cagttgacaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTA</left_flank>
        <right_flank>CAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTTCTGTTTTACACCCATCATTATCAGTTATCACTTCTTGGCAAAAAAGACAATGACCAGTTGCATGTCCTTTTTTGTGTCTTTGTTCATCGCTTGTATATTGGAAATGTTGTCAAACAGCTGACATTGTTTTAGTATCTGCTACAGTAACCCTCTTTTTTCTAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTTCAAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGATCACTTGATTCCTATCATCATCTGACACCGCGAACCTATTCTGAACCCCCCATCAAAAAGAGATTCCAGGAGAGAACAACAACAAAATCATAAAGTGCCACGTGGCAAAAAGTTTTCAAAACATGCGCGGTCTCTTTAATGATGCAAATTGGGTAACAATTTCGAAATGTTTGAACTCTTCTCACTTTCCGATTGGTAATGATCATACTCGCCCCCACCTTTATACAGCCCGGTGCATCATCTCTAATCTTGTGTGCGCGCGCGTATTTTTAAAAATGCATCCAACAGTTGGATTCCGACTCT</canonical>
            <polymorphic>ACCTTCTGTTTTACACCCATCATTATCAGTTATCACTTCTTGGCAAAAAAGACAATGACCAGTTGCATGTCCTTTTTTGTGTCTTTGTTCATCGCTTGTATATTGGAAATGTTGTCAAACAGCTGACATTGTTTTAGTATCTGCTACAGTAACCCTCTTTTTTCTAGTTTCCTTGAAATCGATATTAAACAGCATACTTAAGTCTATTGAAATTTCAAGTGCATATAATAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTAYCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGATCACTTGATTCCTATCATCATCTGACACCGCGAACCTATTCTGAACCCCCCATCAAAAAGAGATTCCAGGAGAGAACAACAACAAAATCATAAAGTGCCACGTGGCAAAAAGTTTTCAAAACATGCGCGGTCTCTTTAATGATGCAAATTGGGTAACAATTTCGAAATGTTTGAACTCTTCTCACTTTCCGATTGGTAATGATCATACTCGCCCCCACCTTTATACAGCCCGGTGCATCATCTCTAATCTTGTGTGCGCGCGCGTATTTTTAAAAATGCATCCAACAGTTGGATTCCGACTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTTGTTCTACCTTCAGAGG</pcr_primer_p1>
		<pcr_primer_p2>AAAGATCAGAAGACTTTTTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>364</pcr_amplicon_size>
		<canonical_amplicon>CCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTT</canonical_amplicon>
		<polymorphic_amplicon>CCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTAYCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29584</snp_id>
        <super_contig>c004701113.Contig1</super_contig>
        <contig_pos>168552</contig_pos>
        <strand>+</strand>
        <context>TCTGACACCG[C/G]GAACCTATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTTCGGGGTACTTTTTGATCACTTGATTCCTATCATCATCTGACACCG</left_flank>
        <right_flank>GAACCTATTCTGAACCCCCCATCAAAAAGAGATTCCAGGAGAGAACAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGATCACTTGATTCCTATCATCATCTGACACCGCGAACCTATTCTGAACCCCCCATCAAAAAGAGATTCCAGGAGAGAACAACAACAAAATCATAAAGTGCCACGTGGCAAAAAGTTTTCAAAACATGCGCGGTCTCTTTAATGATGCAAATTGGGTAACAATTTCGAAATGTTTGAACTCTTCTCACTTTCCGATTGGTAATGATCATACTCGCCCCCACCTTTATACAGCCCGGTGCATCATCTCTAATCTTGTGTGCGCGCGCGTATTTTTAAAAATGCATCCAACAGTTGGATTCCGACTCTGACCATATGATGATTTGAACTTGAAATCCCCTGCGTTGCTACTAGAATAACTATGTCCCCGATGTTATTTAGGTAATCCGCGATGGGCGGAGCCTCATTTTTTGGGGATAAAAAAAGGAAGATTTCTAGGCCACCAAGTTTTTTGTCACTTTCATTGTCTTTCTTTGTTGCAGCTGTTGTTTTCTTGTTTTGCAAAAACCATATAAGGTCAAATAATTCACTCCTCCC</canonical>
            <polymorphic>TAATTAGTTCTCGAACATTCTCTATTTGTCTGCGTCTCCTATTCTCTAGCCTCAGAGGGCAAAGAACCTTCTAGAAGCTCCTAGGTCCTTTGTTCTACCTTCAGAGGGCAAAAAATCTTCTAGAAACTCCTAGATCCGTATATACCGTATTTCCTCTAAAAGAAGCCCACCCAACCCGGTCAACTTTAGGCTCAATTATCTCATTTCCTGTGAAAGATATGAAAATTTTGTCAACTGTTAAAGTATTCATCATAAATTCAGCAACATTTTACCAGTTGACAATTTTCAAGTATCACTCACAGGAACCGAGATATATGAGCTCAAAGTTTACGGTTAGGGTGCCATTCTATTAGAATGATCACGGAGTATAACGCACTCTTATTATTCTTCAATTTCCTCCTATTCCCCAAACCGCCATTTTTGTCTCGGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGATCACTTGATTCCTATCATCATCTGACACCGSGAACCTATTCTGAACCCCCCATCAAAAAGAGATTCCAGGAGAGAACAACAACAAAATCATAAAGTGCCACGTGGCAAAAAGTTTTCAAAACATGCGCGGTCTCTTTAATGATGCAAATTGGGTAACAATTTCGAAATGTTTGAACTCTTCTCACTTTCCGATTGGTAATGATCATACTCGCCCCCACCTTTATACAGCCCGGTGCATCATCTCTAATCTTGTGTGCGCGCGCGTATTTTTAAAAATGCATCCAACAGTTGGATTCCGACTCTGACCATATGATGATTTGAACTTGAAATCCCCTGCGTTGCTACTAGAATAACTATGTCCCCGATGTTATTTAGGTAATCCGCGATGGGCGGAGCCTCATTTTTTGGGGATAAAAAAAGGAAGATTTCTAGGCCACCAAGTTTTTTGTCACTTTCATTGTCTTTCTTTGTTGCAGCTGTTGTTTTCTTGTTTTGCAAAAACCATATAAGGTCAAATAATTCACTCCTCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 148 131 121 97 2 2</canonical_bands>
                <polymorphic_bands>596 148 131 121 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>412 353 142 85 8</canonical_bands>
                <polymorphic_bands>438 412 142 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGACAAAAAGTCTTCTGATCTT</pcr_primer_p1>
		<pcr_primer_p2>GCGAGTATGATCATTACCAATC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGATCACTTGATTCCTATCATCATCTGACACCGCGAACCTATTCTGAACCCCCCATCAAAAAGAGATTCCAGGAGAGAACAACAACAAAATCATAAAGTGCCACGTGGCAAAAAGTTTTCAAAACATGCGCGGTCTCTTTAATGATGCAAATTGGGTAACAATTTCGAAATGTTTGAACTCTTCTCACTTTCCGATTGGTAATGATCATACTCGC</canonical_amplicon>
		<polymorphic_amplicon>GGACAAAAAGTCTTCTGATCTTTTTTTCGGGGTACTTTTTGATCACTTGATTCCTATCATCATCTGACACCGSGAACCTATTCTGAACCCCCCATCAAAAAGAGATTCCAGGAGAGAACAACAACAAAATCATAAAGTGCCACGTGGCAAAAAGTTTTCAAAACATGCGCGGTCTCTTTAATGATGCAAATTGGGTAACAATTTCGAAATGTTTGAACTCTTCTCACTTTCCGATTGGTAATGATCATACTCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29585</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>46554</contig_pos>
        <strand>+</strand>
        <context>TCTAAAAACT[C/T]CGTTGAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTAATATTATTGCGAACAAATTCCAGTAAAAATTCGAGATCTAAAAACT</left_flank>
        <right_flank>CGTTGAAAATGAAAATTTTGCTTAAGAAGGTGCTGAATAGGGACGAGGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCCCCCACGCATCGTTTTGGTGAAAAGACGAATGATGTGTCGAAAGTTTTGGAGGCCAACACCCGAAACAGCTTCTTCCCCATTGTAATATTCATGGGTGCTCGTTGAGCACAAACAGAGGCGCAAATGGATGGACGAGATATCAGGGGATTCGATCTGACGAATACCCCTTTTTTCCCCCATTTGGATTCTTTTCGCTTTCGTTTGAGCACCTTTTTTTTTATTCGCAGTGGATGTTTGGTCTCTACTCTTGTGAGAGTAATTCTGAGTATCAGAAAAGATCAAACCGACTTAGTTAGGACATTTGATTCTGAATTTGGGTTATCATTTTTTGGATACAGTAGACCAAAATGCTTCATGATTCGACCTTTCGCCGGAAATAGTTGAAAGAGAGATTCCGACCAAAATATTTCATTGAATCAAAATGTCTTCCATTCTATCTAATTTTCTAATATTATTGCGAACAAATTCCAGTAAAAATTCGAGATCTAAAAACTCCGTTGAAAATGAAAATTTTGCTTAAGAAGGTGCTGAATAGGGACGAGGATTTGAATTCCGGTGCAGTGAGAAACCTATGCCAGGGCGACGGGACGCTTTTTTTCAAGTTGCTGACAGTGGTTTTTAAAGGTTTTTTTTAGGTGCCGGAGATAAAAGCTGAAAAACTCCGGAAAGTCCTAGGTCTCTCACTGAAATCCTGAAATTCTGAAATTCTGAAATTCTTAAATCCTGAAATATTGAAATTCTGAAATTCTAAAATACTGGAATCCAGAAATTCCGAAATCCTGAGATCTTGAGATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTTTGAAGTTCCTAAATATTTTTTTTTTAATTCCAAACAATTCAGAAATTCGAGAATACAAAAACAAGTCAAAATAGCTGGAGTAGTCTTTAAACCAAAGACCCAATGAGATTTCGAATTTTTCAAAATTTAGAAAAGATATTCCAGTTTTATTTTAAGGTC</canonical>
            <polymorphic>ATTCCCCCACGCATCGTTTTGGTGAAAAGACGAATGATGTGTCGAAAGTTTTGGAGGCCAACACCCGAAACAGCTTCTTCCCCATTGTAATATTCATGGGTGCTCGTTGAGCACAAACAGAGGCGCAAATGGATGGACGAGATATCAGGGGATTCGATCTGACGAATACCCCTTTTTTCCCCCATTTGGATTCTTTTCGCTTTCGTTTGAGCACCTTTTTTTTTATTCGCAGTGGATGTTTGGTCTCTACTCTTGTGAGAGTAATTCTGAGTATCAGAAAAGATCAAACCGACTTAGTTAGGACATTTGATTCTGAATTTGGGTTATCATTTTTTGGATACAGTAGACCAAAATGCTTCATGATTCGACCTTTCGCCGGAAATAGTTGAAAGAGAGATTCCGACCAAAATATTTCATTGAATCAAAATGTCTTCCATTCTATCTAATTTTCTAATATTATTGCGAACAAATTCCAGTAAAAATTCGAGATCTAAAAACTYCGTTGAAAATGAAAATTTTGCTTAAGAAGGTGCTGAATAGGGACGAGGATTTGAATTCCGGTGCAGTGAGAAACCTATGCCAGGGCGACGGGACGCTTTTTTTCAAGTTGCTGACAGTGGTTTTTAAAGGTTTTTTTTAGGTGCCGGAGATAAAAGCTGAAAAACTCCGGAAAGTCCTAGGTCTCTCACTGAAATCCTGAAATTCTGAAATTCTGAAATTCTTAAATCCTGAAATATTGAAATTCTGAAATTCTAAAATACTGGAATCCAGAAATTCCGAAATCCTGAGATCTTGAGATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTTTGAAGTTCCTAAATATTTTTTTTTTAATTCCAAACAATTCAGAAATTCGAGAATACAAAAACAAGTCAAAATAGCTGGAGTAGTCTTTAAACCAAAGACCCAATGAGATTTCGAATTTTTCAAAATTTAGAAAAGATATTCCAGTTTTATTTTAAGGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGAGATTCCGACCAAAATA</pcr_primer_p1>
		<pcr_primer_p2>AAAAACCTTTAAAAACCACTGTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGAGAGATTCCGACCAAAATATTTCATTGAATCAAAATGTCTTCCATTCTATCTAATTTTCTAATATTATTGCGAACAAATTCCAGTAAAAATTCGAGATCTAAAAACTCCGTTGAAAATGAAAATTTTGCTTAAGAAGGTGCTGAATAGGGACGAGGATTTGAATTCCGGTGCAGTGAGAAACCTATGCCAGGGCGACGGGACGCTTTTTTTCAAGTTGCTGACAGTGGTTTTTAAAGGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>AGAGAGATTCCGACCAAAATATTTCATTGAATCAAAATGTCTTCCATTCTATCTAATTTTCTAATATTATTGCGAACAAATTCCAGTAAAAATTCGAGATCTAAAAACTYCGTTGAAAATGAAAATTTTGCTTAAGAAGGTGCTGAATAGGGACGAGGATTTGAATTCCGGTGCAGTGAGAAACCTATGCCAGGGCGACGGGACGCTTTTTTTCAAGTTGCTGACAGTGGTTTTTAAAGGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29586</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>50506</contig_pos>
        <strand>+</strand>
        <context>ATACTAAAAT[C/T]TTAGAGTTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCTAAAAAACTCAAAATTCAAACTTTTAATTACTTCCGAATACTAAAAT</left_flank>
        <right_flank>TTAGAGTTATTACACACTGAAATTCCAAACATCTTCCAAAGAAGCAAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTTTCAGAAAATTATGCAAAATTAGGTTTCTTGTATTCTTGTTCACTACAACTCTTATAGCGCCTAAACCCCCCAATGAGCCGGATTAAACAGACGCAAGTTTGTAGTGTCATAACATTTGAGAAAAGCTTCGCACTGGACTGTATTTTGGAATGCACAAATTCAAAGAAATCATCTGTAAATTGAACAAGTTTCAAACCATTTTATTAACTTTGAGCTATTAAATTTTATTTCTACCAATTTTCGGGCTTCCAAGATGCCTATGTCTCCCCGTTTTTTATCAGTCCGGATCATTGGACGCCATCCTCTAGAGCTTCCTAGAGGGCTTCCAGTGACACTGTAAAATATCAAGTACCTGTTCAATTTTCTCAGCTATCCAGATTTCAAGGTAAAATTGTTGTCTGGCTGTCAAAATGTTGAAATGTTCAAAGGAATTTCCTTTTCATTGCCTAAAAAACTCAAAATTCAAACTTTTAATTACTTCCGAATACTAAAATTTTAGAGTTATTACACACTGAAATTCCAAACATCTTCCAAAGAAGCAAATCAACTTCTTCTTCTTCTTCTTCTTCTTTCTCTTTTTTTTTTTCTACGTCGTACTTTAATTGAGCCTCCAATTTTTTTCGTTTCCTCCCCCACCTATTCGCCATTTTTCGGCCCACAAAACGCCCTTGTGCTGTCTTTTTCAAACGCCAGCAATTTCCGGATCGAACATTCGAAGCACTTCTTTTCGAGTTTCTCTGCGTTTTAATGATCTTTCCAAGTGAAGTCAACCTTTCCGTTTTAGAAGAGTCTGAGCCACATAGTTTTCTTTCTCTGCACCTTCTAGAATCTTCATATTATGGAAGTGTGCTTTCAGAATCTAGAATTAAATCAGATCATAAGCCTCATTTGATAAATCTTCCAAAGGAATTTCTGATTTTTTATATTTTCCATTCAGCTCCTGGCTTTGGCAAAAAGTCAGGGAAAAAGTAGTTGTATACATTACAAAGTGTCAC</canonical>
            <polymorphic>TACTTTCAGAAAATTATGCAAAATTAGGTTTCTTGTATTCTTGTTCACTACAACTCTTATAGCGCCTAAACCCCCCAATGAGCCGGATTAAACAGACGCAAGTTTGTAGTGTCATAACATTTGAGAAAAGCTTCGCACTGGACTGTATTTTGGAATGCACAAATTCAAAGAAATCATCTGTAAATTGAACAAGTTTCAAACCATTTTATTAACTTTGAGCTATTAAATTTTATTTCTACCAATTTTCGGGCTTCCAAGATGCCTATGTCTCCCCGTTTTTTATCAGTCCGGATCATTGGACGCCATCCTCTAGAGCTTCCTAGAGGGCTTCCAGTGACACTGTAAAATATCAAGTACCTGTTCAATTTTCTCAGCTATCCAGATTTCAAGGTAAAATTGTTGTCTGGCTGTCAAAATGTTGAAATGTTCAAAGGAATTTCCTTTTCATTGCCTAAAAAACTCAAAATTCAAACTTTTAATTACTTCCGAATACTAAAATYTTAGAGTTATTACACACTGAAATTCCAAACATCTTCCAAAGAAGCAAATCAACTTCTTCTTCTTCTTCTTCTTCTTTCTCTTTTTTTTTTTCTACGTCGTACTTTAATTGAGCCTCCAATTTTTTTCGTTTCCTCCCCCACCTATTCGCCATTTTTCGGCCCACAAAACGCCCTTGTGCTGTCTTTTTCAAACGCCAGCAATTTCCGGATCGAACATTCGAAGCACTTCTTTTCGAGTTTCTCTGCGTTTTAATGATCTTTCCAAGTGAAGTCAACCTTTCCGTTTTAGAAGAGTCTGAGCCACATAGTTTTCTTTCTCTGCACCTTCTAGAATCTTCATATTATGGAAGTGTGCTTTCAGAATCTAGAATTAAATCAGATCATAAGCCTCATTTGATAAATCTTCCAAAGGAATTTCTGATTTTTTATATTTTCCATTCAGCTCCTGGCTTTGGCAAAAAGTCAGGGAAAAAGTAGTTGTATACATTACAAAGTGTCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>392 209 161 88 64 32 30 24</canonical_bands>
                <polymorphic_bands>392 209 161 88 64 56 30</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>169 140 123 88 85 82 44 43 40 31 30 24 21 19 15 13 12 11 10</canonical_bands>
                <polymorphic_bands>169 140 123 88 85 82 44 43 43 40 31 30 21 15 13 12 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCTCAGCTATCCAGATTTC</pcr_primer_p1>
		<pcr_primer_p2>GGAGGCTCAATTAAAGTACGA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCTCAGCTATCCAGATTTCAAGGTAAAATTGTTGTCTGGCTGTCAAAATGTTGAAATGTTCAAAGGAATTTCCTTTTCATTGCCTAAAAAACTCAAAATTCAAACTTTTAATTACTTCCGAATACTAAAATTTTAGAGTTATTACACACTGAAATTCCAAACATCTTCCAAAGAAGCAAATCAACTTCTTCTTCTTCTTCTTCTTCTTTCTCTTTTTTTTTTTCTACGTCGTACTTTAATTGAGCCTCC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCTCAGCTATCCAGATTTCAAGGTAAAATTGTTGTCTGGCTGTCAAAATGTTGAAATGTTCAAAGGAATTTCCTTTTCATTGCCTAAAAAACTCAAAATTCAAACTTTTAATTACTTCCGAATACTAAAATYTTAGAGTTATTACACACTGAAATTCCAAACATCTTCCAAAGAAGCAAATCAACTTCTTCTTCTTCTTCTTCTTCTTTCTCTTTTTTTTTTTCTACGTCGTACTTTAATTGAGCCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29587</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>93636</contig_pos>
        <strand>+</strand>
        <context>CTTGTTGCCA[C/G]TGTGATKSAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGAATCTTTATGTAGTATTGCGTTTTCTACTTCTTCTCTTCTTGTTGCCA</left_flank>
        <right_flank>TGTGATTCATGTCATTTTCGTGCATTTTTTCTCTTCCACATTTTTTTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGGAATCCGTCTTTTCGTTATTACAAACTCCCACTGTTAACGAATAGCATATCATTCAAAAGATTGTAACTTGTATCACCAATTGCTCAATTTTTCGTTTTCAGCCATCGTATAGACCTTCACCGAAGTTCTCCTATAATGGACGGAGTCGTGGACCGTGTATTCACTACATAACGAAACCAAAAGGATGTTTGCACGGAGATAGATGTCGGTTTGAGCATGACGATATTAAGGTGAGGTATAATAATCGTTGGCCTTCGTGACCCAAAACATTTCAGAGAGCCAACTATCAAAAAGATCTTCAAACTGGGACTCTGAGAAGCGACACTTGGCGATACAACAATCCACGACAACGCCGTACTCCATACAGAAATCCAGGAGAACGTCAAAGTCGTTTTGATCGTTCGAGAAGCCCTCAGACTGTTTCATGAACTTTGATGGAATGCCCCGAATCTTTATGTAGTATTGCGTTTTCTACTTCTTCTCTTCTTGTTGCCACTGTGATTCATGTCATTTTCGTGCATTTTTTCTCTTCCACATTTTTTTTCTCTTTCAAAATATCAGAATCATCTCCATCTAATTGTTCAAAATGTTAACTAGAATGTTCTGTTTCATATCCAACCAAATAAAGAAATAAGAGCATAGATAAAGCTTTATTAGCTTATTATTGACATACATCAGAGGAGAAAAAACCCGTTTTAACTGAAAATTGTGCAAAACTGAGATACACTGGAATAAGAAAAACTGAAGACAAGATAAAAACAAAGACATAGAAAAATCCAAGAAAAAAACTAAAACTCTGGGAATCACTTTTGGAGGGAAAGGTCACTTAGAACATGTAAAAATGGAGGAAACCGACTAGAATTGGGACAATTGACACTAGGGATGATGGGCTCAGTGAGCATGGACGACGTTCGTTCTGAAAAAAAAAGAAAATTGAAAGGAAAAACTTCATTGTGTTGAGGATAATCTCAAGAAATAGTTATATAACTCTGGTTC</canonical>
            <polymorphic>GAGGAATCCGTCTTTTCGTTATTACAAACTCCCACTGTTAACGAATAGCATATCATTCAAAAGATTGTAACTTGTATCACCAATTGCTCAATTTTTCGTTTTCAGCCATCGTATAGACCTTCACCGAAGTTCTCCTATAATGGACGGAGTCGTGGACCGTGTATTCACTACATAACGAAACCAAAAGGATGTTTGCACGGAGATAGATGTCGGTTTGAGCATGACGATATTAAGGTGAGGTATAATAATCGTTGGCCTTCGTGACCCAAAACATTTCAGAGAGCCAACTATCAAAAAGATCTTCAAACTGGGACTCTGAGAAGCGACACTTGGCGATACAACAATCCACGACAACGCCGTACTCCATACAGAAATCCAGGAGAACGTCAAAGTCGTTTTGATCGTTCGAGAAGCCCTCAGACTGTTTCATGAACTTTGATGGAATGCCCCGAATCTTTATGTAGTATTGCGTTTTCTACTTCTTCTCTTCTTGTTGCCASTGTGATTCATGTCATTTTCGTGCATTTTTTCTCTTCCACATTTTTTTTCTCTTTCAAAATATCAGAATCATCTCCATCTAATTGTTCAAAATGTTAACTAGAATGTTCTGTTTCATATCCAACCAAATAAAGAAATAAGAGCATAGATAAAGCTTTATTAGCTTATTATTGACATACATCAGAGGAGAAAAAACCCGTTTTAACTGAAAATTGTGCAAAACTGAGATACACTGGAATAAGAAAAACTGAAGACAAGATAAAAACAAAGACATAGAAAAATCCAAGAAAAAAACTAAAACTCTGGGAATCACTTTTGGAGGGAAAGGTCACTTAGAACATGTAAAAATGGAGGAAACCGACTAGAATTGGGACAATTGACACTAGGGATGATGGGCTCAGTGAGCATGGACGACGTTCGTTCTGAAAAAAAAAGAAAATTGAAAGGAAAAACTTCATTGTGTTGAGGATAATCTCAAGAAATAGTTATATAACTCTGGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>499 265 122 78 36</canonical_bands>
                <polymorphic_bands>577 265 122 36</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>177 151 80 65 59 51 45 44 40 40 34 31 30 26 21 20 19 18 16 15 7 6 5</canonical_bands>
                <polymorphic_bands>177 156 80 65 59 51 45 44 40 40 34 31 30 26 21 20 19 18 16 15 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATACAACAATCCACGACAAC</pcr_primer_p1>
		<pcr_primer_p2>CAATTAGATGGAGATGATTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATACAACAATCCACGACAACGCCGTACTCCATACAGAAATCCAGGAGAACGTCAAAGTCGTTTTGATCGTTCGAGAAGCCCTCAGACTGTTTCATGAACTTTGATGGAATGCCCCGAATCTTTATGTAGTATTGCGTTTTCTACTTCTTCTCTTCTTGTTGCCACTGTGATTCATGTCATTTTCGTGCATTTTTTCTCTTCCACATTTTTTTTCTCTTTCAAAATATCAGAATCATCTCCATCTAATTG</canonical_amplicon>
		<polymorphic_amplicon>GATACAACAATCCACGACAACGCCGTACTCCATACAGAAATCCAGGAGAACGTCAAAGTCGTTTTGATCGTTCGAGAAGCCCTCAGACTGTTTCATGAACTTTGATGGAATGCCCCGAATCTTTATGTAGTATTGCGTTTTCTACTTCTTCTCTTCTTGTTGCCASTGTGATTCATGTCATTTTCGTGCATTTTTTCTCTTCCACATTTTTTTTCTCTTTCAAAATATCAGAATCATCTCCATCTAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29588</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>93643</contig_pos>
        <strand>+</strand>
        <context>CCASTGTGAT[G/T]SATGTCATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTATGTAGTATTGCGTTTTCTACTTCTTCTCTTCTTGTTGCCACTGTGAT</left_flank>
        <right_flank>CATGTCATTTTCGTGCATTTTTTCTCTTCCACATTTTTTTTCTCTTTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGTCTTTTCGTTATTACAAACTCCCACTGTTAACGAATAGCATATCATTCAAAAGATTGTAACTTGTATCACCAATTGCTCAATTTTTCGTTTTCAGCCATCGTATAGACCTTCACCGAAGTTCTCCTATAATGGACGGAGTCGTGGACCGTGTATTCACTACATAACGAAACCAAAAGGATGTTTGCACGGAGATAGATGTCGGTTTGAGCATGACGATATTAAGGTGAGGTATAATAATCGTTGGCCTTCGTGACCCAAAACATTTCAGAGAGCCAACTATCAAAAAGATCTTCAAACTGGGACTCTGAGAAGCGACACTTGGCGATACAACAATCCACGACAACGCCGTACTCCATACAGAAATCCAGGAGAACGTCAAAGTCGTTTTGATCGTTCGAGAAGCCCTCAGACTGTTTCATGAACTTTGATGGAATGCCCCGAATCTTTATGTAGTATTGCGTTTTCTACTTCTTCTCTTCTTGTTGCCACTGTGATTCATGTCATTTTCGTGCATTTTTTCTCTTCCACATTTTTTTTCTCTTTCAAAATATCAGAATCATCTCCATCTAATTGTTCAAAATGTTAACTAGAATGTTCTGTTTCATATCCAACCAAATAAAGAAATAAGAGCATAGATAAAGCTTTATTAGCTTATTATTGACATACATCAGAGGAGAAAAAACCCGTTTTAACTGAAAATTGTGCAAAACTGAGATACACTGGAATAAGAAAAACTGAAGACAAGATAAAAACAAAGACATAGAAAAATCCAAGAAAAAAACTAAAACTCTGGGAATCACTTTTGGAGGGAAAGGTCACTTAGAACATGTAAAAATGGAGGAAACCGACTAGAATTGGGACAATTGACACTAGGGATGATGGGCTCAGTGAGCATGGACGACGTTCGTTCTGAAAAAAAAAGAAAATTGAAAGGAAAAACTTCATTGTGTTGAGGATAATCTCAAGAAATAGTTATATAACTCTGGTTCAGGAAAT</canonical>
            <polymorphic>CCGTCTTTTCGTTATTACAAACTCCCACTGTTAACGAATAGCATATCATTCAAAAGATTGTAACTTGTATCACCAATTGCTCAATTTTTCGTTTTCAGCCATCGTATAGACCTTCACCGAAGTTCTCCTATAATGGACGGAGTCGTGGACCGTGTATTCACTACATAACGAAACCAAAAGGATGTTTGCACGGAGATAGATGTCGGTTTGAGCATGACGATATTAAGGTGAGGTATAATAATCGTTGGCCTTCGTGACCCAAAACATTTCAGAGAGCCAACTATCAAAAAGATCTTCAAACTGGGACTCTGAGAAGCGACACTTGGCGATACAACAATCCACGACAACGCCGTACTCCATACAGAAATCCAGGAGAACGTCAAAGTCGTTTTGATCGTTCGAGAAGCCCTCAGACTGTTTCATGAACTTTGATGGAATGCCCCGAATCTTTATGTAGTATTGCGTTTTCTACTTCTTCTCTTCTTGTTGCCACTGTGATKCATGTCATTTTCGTGCATTTTTTCTCTTCCACATTTTTTTTCTCTTTCAAAATATCAGAATCATCTCCATCTAATTGTTCAAAATGTTAACTAGAATGTTCTGTTTCATATCCAACCAAATAAAGAAATAAGAGCATAGATAAAGCTTTATTAGCTTATTATTGACATACATCAGAGGAGAAAAAACCCGTTTTAACTGAAAATTGTGCAAAACTGAGATACACTGGAATAAGAAAAACTGAAGACAAGATAAAAACAAAGACATAGAAAAATCCAAGAAAAAAACTAAAACTCTGGGAATCACTTTTGGAGGGAAAGGTCACTTAGAACATGTAAAAATGGAGGAAACCGACTAGAATTGGGACAATTGACACTAGGGATGATGGGCTCAGTGAGCATGGACGACGTTCGTTCTGAAAAAAAAAGAAAATTGAAAGGAAAAACTTCATTGTGTTGAGGATAATCTCAAGAAATAGTTATATAACTCTGGTTCAGGAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>240 202 165 140 139 61 53</canonical_bands>
                <polymorphic_bands>240 202 165 140 139 114</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>444 240 202 61 53</canonical_bands>
                <polymorphic_bands>444 240 202 114</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATACAACAATCCACGACAAC</pcr_primer_p1>
		<pcr_primer_p2>CAATTAGATGGAGATGATTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATACAACAATCCACGACAACGCCGTACTCCATACAGAAATCCAGGAGAACGTCAAAGTCGTTTTGATCGTTCGAGAAGCCCTCAGACTGTTTCATGAACTTTGATGGAATGCCCCGAATCTTTATGTAGTATTGCGTTTTCTACTTCTTCTCTTCTTGTTGCCACTGTGATTCATGTCATTTTCGTGCATTTTTTCTCTTCCACATTTTTTTTCTCTTTCAAAATATCAGAATCATCTCCATCTAATTG</canonical_amplicon>
		<polymorphic_amplicon>GATACAACAATCCACGACAACGCCGTACTCCATACAGAAATCCAGGAGAACGTCAAAGTCGTTTTGATCGTTCGAGAAGCCCTCAGACTGTTTCATGAACTTTGATGGAATGCCCCGAATCTTTATGTAGTATTGCGTTTTCTACTTCTTCTCTTCTTGTTGCCACTGTGATKCATGTCATTTTCGTGCATTTTTTCTCTTCCACATTTTTTTTCTCTTTCAAAATATCAGAATCATCTCCATCTAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29589</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>93644</contig_pos>
        <strand>+</strand>
        <context>CASTGTGATK[C/G]ATGTCATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TATGTAGTATTGCGTTTTCTACTTCTTCTCTTCTTGTTGCCACTGTGATT</left_flank>
        <right_flank>ATGTCATTTTCGTGCATTTTTTCTCTTCCACATTTTTTTTCTCTTTCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTCTTTTCGTTATTACAAACTCCCACTGTTAACGAATAGCATATCATTCAAAAGATTGTAACTTGTATCACCAATTGCTCAATTTTTCGTTTTCAGCCATCGTATAGACCTTCACCGAAGTTCTCCTATAATGGACGGAGTCGTGGACCGTGTATTCACTACATAACGAAACCAAAAGGATGTTTGCACGGAGATAGATGTCGGTTTGAGCATGACGATATTAAGGTGAGGTATAATAATCGTTGGCCTTCGTGACCCAAAACATTTCAGAGAGCCAACTATCAAAAAGATCTTCAAACTGGGACTCTGAGAAGCGACACTTGGCGATACAACAATCCACGACAACGCCGTACTCCATACAGAAATCCAGGAGAACGTCAAAGTCGTTTTGATCGTTCGAGAAGCCCTCAGACTGTTTCATGAACTTTGATGGAATGCCCCGAATCTTTATGTAGTATTGCGTTTTCTACTTCTTCTCTTCTTGTTGCCACTGTGATTCATGTCATTTTCGTGCATTTTTTCTCTTCCACATTTTTTTTCTCTTTCAAAATATCAGAATCATCTCCATCTAATTGTTCAAAATGTTAACTAGAATGTTCTGTTTCATATCCAACCAAATAAAGAAATAAGAGCATAGATAAAGCTTTATTAGCTTATTATTGACATACATCAGAGGAGAAAAAACCCGTTTTAACTGAAAATTGTGCAAAACTGAGATACACTGGAATAAGAAAAACTGAAGACAAGATAAAAACAAAGACATAGAAAAATCCAAGAAAAAAACTAAAACTCTGGGAATCACTTTTGGAGGGAAAGGTCACTTAGAACATGTAAAAATGGAGGAAACCGACTAGAATTGGGACAATTGACACTAGGGATGATGGGCTCAGTGAGCATGGACGACGTTCGTTCTGAAAAAAAAAGAAAATTGAAAGGAAAAACTTCATTGTGTTGAGGATAATCTCAAGAAATAGTTATATAACTCTGGTTCAGGAAATC</canonical>
            <polymorphic>CGTCTTTTCGTTATTACAAACTCCCACTGTTAACGAATAGCATATCATTCAAAAGATTGTAACTTGTATCACCAATTGCTCAATTTTTCGTTTTCAGCCATCGTATAGACCTTCACCGAAGTTCTCCTATAATGGACGGAGTCGTGGACCGTGTATTCACTACATAACGAAACCAAAAGGATGTTTGCACGGAGATAGATGTCGGTTTGAGCATGACGATATTAAGGTGAGGTATAATAATCGTTGGCCTTCGTGACCCAAAACATTTCAGAGAGCCAACTATCAAAAAGATCTTCAAACTGGGACTCTGAGAAGCGACACTTGGCGATACAACAATCCACGACAACGCCGTACTCCATACAGAAATCCAGGAGAACGTCAAAGTCGTTTTGATCGTTCGAGAAGCCCTCAGACTGTTTCATGAACTTTGATGGAATGCCCCGAATCTTTATGTAGTATTGCGTTTTCTACTTCTTCTCTTCTTGTTGCCACTGTGATTSATGTCATTTTCGTGCATTTTTTCTCTTCCACATTTTTTTTCTCTTTCAAAATATCAGAATCATCTCCATCTAATTGTTCAAAATGTTAACTAGAATGTTCTGTTTCATATCCAACCAAATAAAGAAATAAGAGCATAGATAAAGCTTTATTAGCTTATTATTGACATACATCAGAGGAGAAAAAACCCGTTTTAACTGAAAATTGTGCAAAACTGAGATACACTGGAATAAGAAAAACTGAAGACAAGATAAAAACAAAGACATAGAAAAATCCAAGAAAAAAACTAAAACTCTGGGAATCACTTTTGGAGGGAAAGGTCACTTAGAACATGTAAAAATGGAGGAAACCGACTAGAATTGGGACAATTGACACTAGGGATGATGGGCTCAGTGAGCATGGACGACGTTCGTTCTGAAAAAAAAAGAAAATTGAAAGGAAAAACTTCATTGTGTTGAGGATAATCTCAAGAAATAGTTATATAACTCTGGTTCAGGAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>329 212 208 104 80 67</canonical_bands>
                <polymorphic_bands>409 212 208 104 67</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>240 203 165 139 139 61 53</canonical_bands>
                <polymorphic_bands>240 203 165 139 139 114</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>443 240 203 61 53</canonical_bands>
                <polymorphic_bands>443 240 203 114</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATACAACAATCCACGACAAC</pcr_primer_p1>
		<pcr_primer_p2>CAATTAGATGGAGATGATTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATACAACAATCCACGACAACGCCGTACTCCATACAGAAATCCAGGAGAACGTCAAAGTCGTTTTGATCGTTCGAGAAGCCCTCAGACTGTTTCATGAACTTTGATGGAATGCCCCGAATCTTTATGTAGTATTGCGTTTTCTACTTCTTCTCTTCTTGTTGCCACTGTGATTCATGTCATTTTCGTGCATTTTTTCTCTTCCACATTTTTTTTCTCTTTCAAAATATCAGAATCATCTCCATCTAATTG</canonical_amplicon>
		<polymorphic_amplicon>GATACAACAATCCACGACAACGCCGTACTCCATACAGAAATCCAGGAGAACGTCAAAGTCGTTTTGATCGTTCGAGAAGCCCTCAGACTGTTTCATGAACTTTGATGGAATGCCCCGAATCTTTATGTAGTATTGCGTTTTCTACTTCTTCTCTTCTTGTTGCCACTGTGATTSATGTCATTTTCGTGCATTTTTTCTCTTCCACATTTTTTTTCTCTTTCAAAATATCAGAATCATCTCCATCTAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29590</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>93663</contig_pos>
        <strand>+</strand>
        <context>TTCGTGCATT[G/T]TTTCTCTTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TACTTCTTCTCTTCTTGTTGCCACTGTGATTCATGTCATTTTCGTGCATT</left_flank>
        <right_flank>TTTCTCTTCCACATTTTTTTTCTCTTTCAAAATATCAGAATCATCTCCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCCCACTGTTAACGAATAGCATATCATTCAAAAGATTGTAACTTGTATCACCAATTGCTCAATTTTTCGTTTTCAGCCATCGTATAGACCTTCACCGAAGTTCTCCTATAATGGACGGAGTCGTGGACCGTGTATTCACTACATAACGAAACCAAAAGGATGTTTGCACGGAGATAGATGTCGGTTTGAGCATGACGATATTAAGGTGAGGTATAATAATCGTTGGCCTTCGTGACCCAAAACATTTCAGAGAGCCAACTATCAAAAAGATCTTCAAACTGGGACTCTGAGAAGCGACACTTGGCGATACAACAATCCACGACAACGCCGTACTCCATACAGAAATCCAGGAGAACGTCAAAGTCGTTTTGATCGTTCGAGAAGCCCTCAGACTGTTTCATGAACTTTGATGGAATGCCCCGAATCTTTATGTAGTATTGCGTTTTCTACTTCTTCTCTTCTTGTTGCCACTGTGATTCATGTCATTTTCGTGCATTTTTTCTCTTCCACATTTTTTTTCTCTTTCAAAATATCAGAATCATCTCCATCTAATTGTTCAAAATGTTAACTAGAATGTTCTGTTTCATATCCAACCAAATAAAGAAATAAGAGCATAGATAAAGCTTTATTAGCTTATTATTGACATACATCAGAGGAGAAAAAACCCGTTTTAACTGAAAATTGTGCAAAACTGAGATACACTGGAATAAGAAAAACTGAAGACAAGATAAAAACAAAGACATAGAAAAATCCAAGAAAAAAACTAAAACTCTGGGAATCACTTTTGGAGGGAAAGGTCACTTAGAACATGTAAAAATGGAGGAAACCGACTAGAATTGGGACAATTGACACTAGGGATGATGGGCTCAGTGAGCATGGACGACGTTCGTTCTGAAAAAAAAAGAAAATTGAAAGGAAAAACTTCATTGTGTTGAGGATAATCTCAAGAAATAGTTATATAACTCTGGTTCAGGAAATCGGTACTGTAGAAGAAGGTC</canonical>
            <polymorphic>ACTCCCACTGTTAACGAATAGCATATCATTCAAAAGATTGTAACTTGTATCACCAATTGCTCAATTTTTCGTTTTCAGCCATCGTATAGACCTTCACCGAAGTTCTCCTATAATGGACGGAGTCGTGGACCGTGTATTCACTACATAACGAAACCAAAAGGATGTTTGCACGGAGATAGATGTCGGTTTGAGCATGACGATATTAAGGTGAGGTATAATAATCGTTGGCCTTCGTGACCCAAAACATTTCAGAGAGCCAACTATCAAAAAGATCTTCAAACTGGGACTCTGAGAAGCGACACTTGGCGATACAACAATCCACGACAACGCCGTACTCCATACAGAAATCCAGGAGAACGTCAAAGTCGTTTTGATCGTTCGAGAAGCCCTCAGACTGTTTCATGAACTTTGATGGAATGCCCCGAATCTTTATGTAGTATTGCGTTTTCTACTTCTTCTCTTCTTGTTGCCACTGTGATTCATGTCATTTTCGTGCATTKTTTCTCTTCCACATTTTTTTTCTCTTTCAAAATATCAGAATCATCTCCATCTAATTGTTCAAAATGTTAACTAGAATGTTCTGTTTCATATCCAACCAAATAAAGAAATAAGAGCATAGATAAAGCTTTATTAGCTTATTATTGACATACATCAGAGGAGAAAAAACCCGTTTTAACTGAAAATTGTGCAAAACTGAGATACACTGGAATAAGAAAAACTGAAGACAAGATAAAAACAAAGACATAGAAAAATCCAAGAAAAAAACTAAAACTCTGGGAATCACTTTTGGAGGGAAAGGTCACTTAGAACATGTAAAAATGGAGGAAACCGACTAGAATTGGGACAATTGACACTAGGGATGATGGGCTCAGTGAGCATGGACGACGTTCGTTCTGAAAAAAAAAGAAAATTGAAAGGAAAAACTTCATTGTGTTGAGGATAATCTCAAGAAATAGTTATATAACTCTGGTTCAGGAAATCGGTACTGTAGAAGAAGGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATACAACAATCCACGACAAC</pcr_primer_p1>
		<pcr_primer_p2>CAATTAGATGGAGATGATTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATACAACAATCCACGACAACGCCGTACTCCATACAGAAATCCAGGAGAACGTCAAAGTCGTTTTGATCGTTCGAGAAGCCCTCAGACTGTTTCATGAACTTTGATGGAATGCCCCGAATCTTTATGTAGTATTGCGTTTTCTACTTCTTCTCTTCTTGTTGCCACTGTGATTCATGTCATTTTCGTGCATTTTTTCTCTTCCACATTTTTTTTCTCTTTCAAAATATCAGAATCATCTCCATCTAATTG</canonical_amplicon>
		<polymorphic_amplicon>GATACAACAATCCACGACAACGCCGTACTCCATACAGAAATCCAGGAGAACGTCAAAGTCGTTTTGATCGTTCGAGAAGCCCTCAGACTGTTTCATGAACTTTGATGGAATGCCCCGAATCTTTATGTAGTATTGCGTTTTCTACTTCTTCTCTTCTTGTTGCCACTGTGATTCATGTCATTTTCGTGCATTKTTTCTCTTCCACATTTTTTTTCTCTTTCAAAATATCAGAATCATCTCCATCTAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29591</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>93781</contig_pos>
        <strand>+</strand>
        <context>ATAAGAGCAT[A/T]GATAAAGCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAACTAGAATGTTCTGTTTCATATCCAACCAAATAAAGAAATAAGAGCAT</left_flank>
        <right_flank>GATAAAGCTTTATTAGCTTATTATTGACATACATCAGAGGAGAAAAAACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGTCGTGGACCGTGTATTCACTACATAACGAAACCAAAAGGATGTTTGCACGGAGATAGATGTCGGTTTGAGCATGACGATATTAAGGTGAGGTATAATAATCGTTGGCCTTCGTGACCCAAAACATTTCAGAGAGCCAACTATCAAAAAGATCTTCAAACTGGGACTCTGAGAAGCGACACTTGGCGATACAACAATCCACGACAACGCCGTACTCCATACAGAAATCCAGGAGAACGTCAAAGTCGTTTTGATCGTTCGAGAAGCCCTCAGACTGTTTCATGAACTTTGATGGAATGCCCCGAATCTTTATGTAGTATTGCGTTTTCTACTTCTTCTCTTCTTGTTGCCACTGTGATTCATGTCATTTTCGTGCATTTTTTCTCTTCCACATTTTTTTTCTCTTTCAAAATATCAGAATCATCTCCATCTAATTGTTCAAAATGTTAACTAGAATGTTCTGTTTCATATCCAACCAAATAAAGAAATAAGAGCATAGATAAAGCTTTATTAGCTTATTATTGACATACATCAGAGGAGAAAAAACCCGTTTTAACTGAAAATTGTGCAAAACTGAGATACACTGGAATAAGAAAAACTGAAGACAAGATAAAAACAAAGACATAGAAAAATCCAAGAAAAAAACTAAAACTCTGGGAATCACTTTTGGAGGGAAAGGTCACTTAGAACATGTAAAAATGGAGGAAACCGACTAGAATTGGGACAATTGACACTAGGGATGATGGGCTCAGTGAGCATGGACGACGTTCGTTCTGAAAAAAAAAGAAAATTGAAAGGAAAAACTTCATTGTGTTGAGGATAATCTCAAGAAATAGTTATATAACTCTGGTTCAGGAAATCGGTACTGTAGAAGAAGGTCTCACAACGACAGCTACTGTAAACTAAAATATGTACATTTTTTAAGATTTATTTTCCCCTTTCTCACAGCTTTTCGTCGAGCTTTCTGATATTTTTACCATACAAGTCGAAAAAAAAAA</canonical>
            <polymorphic>GGAGTCGTGGACCGTGTATTCACTACATAACGAAACCAAAAGGATGTTTGCACGGAGATAGATGTCGGTTTGAGCATGACGATATTAAGGTGAGGTATAATAATCGTTGGCCTTCGTGACCCAAAACATTTCAGAGAGCCAACTATCAAAAAGATCTTCAAACTGGGACTCTGAGAAGCGACACTTGGCGATACAACAATCCACGACAACGCCGTACTCCATACAGAAATCCAGGAGAACGTCAAAGTCGTTTTGATCGTTCGAGAAGCCCTCAGACTGTTTCATGAACTTTGATGGAATGCCCCGAATCTTTATGTAGTATTGCGTTTTCTACTTCTTCTCTTCTTGTTGCCACTGTGATTCATGTCATTTTCGTGCATTTTTTCTCTTCCACATTTTTTTTCTCTTTCAAAATATCAGAATCATCTCCATCTAATTGTTCAAAATGTTAACTAGAATGTTCTGTTTCATATCCAACCAAATAAAGAAATAAGAGCATWGATAAAGCTTTATTAGCTTATTATTGACATACATCAGAGGAGAAAAAACCCGTTTTAACTGAAAATTGTGCAAAACTGAGATACACTGGAATAAGAAAAACTGAAGACAAGATAAAAACAAAGACATAGAAAAATCCAAGAAAAAAACTAAAACTCTGGGAATCACTTTTGGAGGGAAAGGTCACTTAGAACATGTAAAAATGGAGGAAACCGACTAGAATTGGGACAATTGACACTAGGGATGATGGGCTCAGTGAGCATGGACGACGTTCGTTCTGAAAAAAAAAGAAAATTGAAAGGAAAAACTTCATTGTGTTGAGGATAATCTCAAGAAATAGTTATATAACTCTGGTTCAGGAAATCGGTACTGTAGAAGAAGGTCTCACAACGACAGCTACTGTAAACTAAAATATGTACATTTTTTAAGATTTATTTTCCCCTTTCTCACAGCTTTTCGTCGAGCTTTCTGATATTTTTACCATACAAGTCGAAAAAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCATCTCCATCTAATTGTTCA</pcr_primer_p1>
		<pcr_primer_p2>AAAGTGATTCCCAGAGTTTTAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATCATCTCCATCTAATTGTTCAAAATGTTAACTAGAATGTTCTGTTTCATATCCAACCAAATAAAGAAATAAGAGCATAGATAAAGCTTTATTAGCTTATTATTGACATACATCAGAGGAGAAAAAACCCGTTTTAACTGAAAATTGTGCAAAACTGAGATACACTGGAATAAGAAAAACTGAAGACAAGATAAAAACAAAGACATAGAAAAATCCAAGAAAAAAACTAAAACTCTGGGAATCACTTT</canonical_amplicon>
		<polymorphic_amplicon>AATCATCTCCATCTAATTGTTCAAAATGTTAACTAGAATGTTCTGTTTCATATCCAACCAAATAAAGAAATAAGAGCATWGATAAAGCTTTATTAGCTTATTATTGACATACATCAGAGGAGAAAAAACCCGTTTTAACTGAAAATTGTGCAAAACTGAGATACACTGGAATAAGAAAAACTGAAGACAAGATAAAAACAAAGACATAGAAAAATCCAAGAAAAAAACTAAAACTCTGGGAATCACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29592</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>94411</contig_pos>
        <strand></strand>
        <context>atcctttttt[A/G]taccagaTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTTCTTTTGTGGGATCTCCCGACGTTTCTCTTCCACTTATCCTTTTTT</left_flank>
        <right_flank>TACCAGATATTCCTCAAAAATATGAATTATGAGCAGTAACACTTACCTCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATCCAAGAAAAAAACTAAAACTCTGGGAATCACTTTTGGAGGGAAAGGTCACTTAGAACATGTAAAAATGGAGGAAACCGACTAGAATTGGGACAATTGACACTAGGGATGATGGGCTCAGTGAGCATGGACGACGTTCGTTCTGAAAAAAAAAGAAAATTGAAAGGAAAAACTTCATTGTGTTGAGGATAATCTCAAGAAATAGTTATATAACTCTGGTTCAGGAAATCGGTACTGTAGAAGAAGGTCTCACAACGACAGCTACTGTAAACTAAAATATGTACATTTTTTAAGATTTATTTTCCCCTTTCTCACAGCTTTTCGTCGAGCTTTCTGATATTTTTACCATACAAGTCGAAAAAAAAAATTTTGACATTAAAAAAATTGACTTAAAATGCACGAAAATCGAGAAAACAAATCCGGAAACTCATTTCTAGGTTACGATAGTTTTCTTTTGTGGGATCTCCCGACGTTTCTCTTCCACTTATCCTTTTTTATACCAGATATTCCTCAAAAATATGAATTATGAGCAGTAACACTTACCTCTGAATCATCATCGTCTATCGAATAACAAACATCGTTCGCTTTCGATTTTCGCTTTTCAAGATTCTCGCACGACTCATCGTTTTTGACTTCTTCGAATCCGAATGGAACCTGCGCACTCGGAATATCCATTGAACATTCCGATTCGTCGTAACAGTTCTCACTGGCTTTATCTTGTGTGATCCACACCATTACTAAATTCGTTCCGTCGACGAAAGCAGCTTCTATTTTGCTGAAAAATCACAAATTTTTATGATTGATAACCGAGGGAAATCGAAATTACACAGAACATTTTGCATTCATCTTGCACGGTCTCTCAGAACGATTTCCAGTGACAAGATGCGTGCTTGTAGGTCGATTCTTGCCGTCTTTGTTCGAAAAGTAAAACGATGATTGTTTGGGACACGGATAGACATCTGTTCCTTCGTGGAATGATGCAGTGTAGGCTGGAAAA</canonical>
            <polymorphic>AAAATCCAAGAAAAAAACTAAAACTCTGGGAATCACTTTTGGAGGGAAAGGTCACTTAGAACATGTAAAAATGGAGGAAACCGACTAGAATTGGGACAATTGACACTAGGGATGATGGGCTCAGTGAGCATGGACGACGTTCGTTCTGAAAAAAAAAGAAAATTGAAAGGAAAAACTTCATTGTGTTGAGGATAATCTCAAGAAATAGTTATATAACTCTGGTTCAGGAAATCGGTACTGTAGAAGAAGGTCTCACAACGACAGCTACTGTAAACTAAAATATGTACATTTTTTAAGATTTATTTTCCCCTTTCTCACAGCTTTTCGTCGAGCTTTCTGATATTTTTACCATACAAGTCGAAAAAAAAAATTTTGACATTAAAAAAATTGACTTAAAATGCACGAAAATCGAGAAAACAAATCCGGAAACTCATTTCTAGGTTACGATAGTTTTCTTTTGTGGGATCTCCCGACGTTTCTCTTCCACTTATCCTTTTTTRTACCAGATATTCCTCAAAAATATGAATTATGAGCAGTAACACTTACCTCTGAATCATCATCGTCTATCGAATAACAAACATCGTTCGCTTTCGATTTTCGCTTTTCAAGATTCTCGCACGACTCATCGTTTTTGACTTCTTCGAATCCGAATGGAACCTGCGCACTCGGAATATCCATTGAACATTCCGATTCGTCGTAACAGTTCTCACTGGCTTTATCTTGTGTGATCCACACCATTACTAAATTCGTTCCGTCGACGAAAGCAGCTTCTATTTTGCTGAAAAATCACAAATTTTTATGATTGATAACCGAGGGAAATCGAAATTACACAGAACATTTTGCATTCATCTTGCACGGTCTCTCAGAACGATTTCCAGTGACAAGATGCGTGCTTGTAGGTCGATTCTTGCCGTCTTTGTTCGAAAAGTAAAACGATGATTGTTTGGGACACGGATAGACATCTGTTCCTTCGTGGAATGATGCAGTGTAGGCTGGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCATTGTGTTGAGGATAATCT</pcr_primer_p1>
		<pcr_primer_p2>GATTCAGAGGTAAGTGTTACTGC</pcr_primer_p2>
		<pcr_amplicon_size>380</pcr_amplicon_size>
		<canonical_amplicon>CTTCATTGTGTTGAGGATAATCTCAAGAAATAGTTATATAACTCTGGTTCAGGAAATCGGTACTGTAGAAGAAGGTCTCACAACGACAGCTACTGTAAACTAAAATATGTACATTTTTTAAGATTTATTTTCCCCTTTCTCACAGCTTTTCGTCGAGCTTTCTGATATTTTTACCATACAAGTCGAAAAAAAAAATTTTGACATTAAAAAAATTGACTTAAAATGCACGAAAATCGAGAAAACAAATCCGGAAACTCATTTCTAGGTTACGATAGTTTTCTTTTGTGGGATCTCCCGACGTTTCTCTTCCACTTATCCTTTTTTATACCAGATATTCCTCAAAAATATGAATTATGAGCAGTAACACTTACCTCTGAATC</canonical_amplicon>
		<polymorphic_amplicon>CTTCATTGTGTTGAGGATAATCTCAAGAAATAGTTATATAACTCTGGTTCAGGAAATCGGTACTGTAGAAGAAGGTCTCACAACGACAGCTACTGTAAACTAAAATATGTACATTTTTTAAGATTTATTTTCCCCTTTCTCACAGCTTTTCGTCGAGCTTTCTGATATTTTTACCATACAAGTCGAAAAAAAAAATTTTGACATTAAAAAAATTGACTTAAAATGCACGAAAATCGAGAAAACAAATCCGGAAACTCATTTCTAGGTTACGATAGTTTTCTTTTGTGGGATCTCCCGACGTTTCTCTTCCACTTATCCTTTTTTRTACCAGATATTCCTCAAAAATATGAATTATGAGCAGTAACACTTACCTCTGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29593</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>97542</contig_pos>
        <strand></strand>
        <context>taaattttgt[G/A]ctagcataaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAATGAAGTCATGTACAGAATTTAACATAATTAACCGGACTAAATTTTGT</left_flank>
        <right_flank>CTAGCATAAAACTTGAGTGAAGAGTTCTGTTGTGCTCAACTTTGGACTGC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATCGAACATTCTGATTTTGGCCAACTTCCAATTCCAATAAATCCATGTTATTGTAATTTTGTTTGTGGTATTTTGTGACAGGATCAATAGGTCGAAGTTGCGGATGAGTCATCACAAATCCATTTTGATCCAACATGAAGAAATAACTCTTTGCTCCAATCTAAAGAATTTAGGTCAACTTTTCATAGAAAAGTTTAAAGGAAATCTTACATTAGCTGGATGGGATTTTTGGGCTATTTCTGTCAGGGGAATGTTGACTGCAGCCACTCCCATAAACGTTTCATTGACAATAACTGGATAAGAAACTGTTGTAACGAACATTCGACTTCTGGCTTCTGATTTTTGGAGTCGAATTTTTCGACGAGATGCCATCTTGTTCATCACGGCAAACGATTGATTGGTGATTGGAACTGGTTCAGCAAAAACTTCGGGACGTGGCAGATACTGAAATGAAGTCATGTACAGAATTTAACATAATTAACCGGACTAAATTTTGTGCTAGCATAAAACTTGAGTGAAGAGTTCTGTTGTGCTCAACTTTGGACTGCTAAAATTCCAATAATTCATCAGAAAAATGGTCAAGTTTCAAATTATTTGATTAGTTTTGAGTTGAGTCATCGCTTGTCAAAGTTGCTTCATCTCATGAAAACTGAAACGGCGTTCAAGACGCATTGTTCATCTTTGGACAATCGATTTGAAAATTTCAGTGGCTTTGAACCAAACGTAAAATTATATTTCTTCCAACTTTCGTGCTTTCAAGATACTTATGTCTAAAGATATACTTTTATCAGTCCGGGTGATTTTGAGCCACCCCTTCTTATGAAATGACATAAATTACGGTAGAACATTTCCTGCCGAAAAAAGATCCCAGAACAAGAAATCAACAAACCAATCGTTCTCTGTATACTCCAGTCCACCATGACAATTGTCCTGATTCCTTATAATGCCTTCCAACCACCCTTGACATCCTTCTGATATAATGATGAATCTTCTCATCA</canonical>
            <polymorphic>GGATCGAACATTCTGATTTTGGCCAACTTCCAATTCCAATAAATCCATGTTATTGTAATTTTGTTTGTGGTATTTTGTGACAGGATCAATAGGTCGAAGTTGCGGATGAGTCATCACAAATCCATTTTGATCCAACATGAAGAAATAACTCTTTGCTCCAATCTAAAGAATTTAGGTCAACTTTTCATAGAAAAGTTTAAAGGAAATCTTACATTAGCTGGATGGGATTTTTGGGCTATTTCTGTCAGGGGAATGTTGACTGCAGCCACTCCCATAAACGTTTCATTGACAATAACTGGATAAGAAACTGTTGTAACGAACATTCGACTTCTGGCTTCTGATTTTTGGAGTCGAATTTTTCGACGAGATGCCATCTTGTTCATCACGGCAAACGATTGATTGGTGATTGGAACTGGTTCAGCAAAAACTTCGGGACGTGGCAGATACTGAAATGAAGTCATGTACAGAATTTAACATAATTAACCGGACTAAATTTTGTRCTAGCATAAAACTTGAGTGAAGAGTTCTGTTGTGCTCAACTTTGGACTGCTAAAATTCCAATAATTCATCAGAAAAATGGTCAAGTTTCAAATTATTTGATTAGTTTTGAGTTGAGTCATCGCTTGTCAAAGTTGCTTCATCTCATGAAAACTGAAACGGCGTTCAAGACGCATTGTTCATCTTTGGACAATCGATTTGAAAATTTCAGTGGCTTTGAACCAAACGTAAAATTATATTTCTTCCAACTTTCGTGCTTTCAAGATACTTATGTCTAAAGATATACTTTTATCAGTCCGGGTGATTTTGAGCCACCCCTTCTTATGAAATGACATAAATTACGGTAGAACATTTCCTGCCGAAAAAAGATCCCAGAACAAGAAATCAACAAACCAATCGTTCTCTGTATACTCCAGTCCACCATGACAATTGTCCTGATTCCTTATAATGCCTTCCAACCACCCTTGACATCCTTCTGATATAATGATGAATCTTCTCATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCTAGC</site>
                <isoschizomers>
                    <enzyme>AsuNHI</enzyme>
                    <enzyme>BmtI</enzyme>
                    <enzyme>NheI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>177 152 117 106 69 61 47 43 41 41 37 34 20 19 15 11 10</canonical_bands>
                <polymorphic_bands>177 152 117 106 80 69 47 43 41 41 37 34 20 15 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGGCAGATACTGAAATGAAGT</pcr_primer_p1>
		<pcr_primer_p2>AGGAAATGTTCTACCGTAATTTAT</pcr_primer_p2>
		<pcr_amplicon_size>419</pcr_amplicon_size>
		<canonical_amplicon>GTGGCAGATACTGAAATGAAGTCATGTACAGAATTTAACATAATTAACCGGACTAAATTTTGTGCTAGCATAAAACTTGAGTGAAGAGTTCTGTTGTGCTCAACTTTGGACTGCTAAAATTCCAATAATTCATCAGAAAAATGGTCAAGTTTCAAATTATTTGATTAGTTTTGAGTTGAGTCATCGCTTGTCAAAGTTGCTTCATCTCATGAAAACTGAAACGGCGTTCAAGACGCATTGTTCATCTTTGGACAATCGATTTGAAAATTTCAGTGGCTTTGAACCAAACGTAAAATTATATTTCTTCCAACTTTCGTGCTTTCAAGATACTTATGTCTAAAGATATACTTTTATCAGTCCGGGTGATTTTGAGCCACCCCTTCTTATGAAATGACATAAATTACGGTAGAACATTTCCT</canonical_amplicon>
		<polymorphic_amplicon>GTGGCAGATACTGAAATGAAGTCATGTACAGAATTTAACATAATTAACCGGACTAAATTTTGTRCTAGCATAAAACTTGAGTGAAGAGTTCTGTTGTGCTCAACTTTGGACTGCTAAAATTCCAATAATTCATCAGAAAAATGGTCAAGTTTCAAATTATTTGATTAGTTTTGAGTTGAGTCATCGCTTGTCAAAGTTGCTTCATCTCATGAAAACTGAAACGGCGTTCAAGACGCATTGTTCATCTTTGGACAATCGATTTGAAAATTTCAGTGGCTTTGAACCAAACGTAAAATTATATTTCTTCCAACTTTCGTGCTTTCAAGATACTTATGTCTAAAGATATACTTTTATCAGTCCGGGTGATTTTGAGCCACCCCTTCTTATGAAATGACATAAATTACGGTAGAACATTTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29594</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>140875</contig_pos>
        <strand>+</strand>
        <context>CGAGACGTGA[C/T]CAAGAAGATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGACGTGAACAAGAAGACAGTAGAAAACGTGAAGAACAATCGAGACGTGA</left_flank>
        <right_flank>CAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATTGTTATTGAAACAAAAGTTTACTCACATTATAATCAAACCAAGCCAACTAATATTATGGCTGAAATGAAAAATTGTAAGTATCAAGACGGTTTTTGTGAGATTAAGAAAAATGAAATCGTCACTTGGGATGTCAACAGAGAGCAAAAATGTCAATACATCTCGATTGGAATACTAGATGGAATGTATAGCAACAAACTTTGGGTTAACAATAAAAACCAAATTGCTCTCAACTTCCAATCAGATAAAACTATACAAGATTGCAATTCGAGTCTAATGATCAGCGATGAAGGCTTTGCTGTAAGAAGAATCAATAGAGCTGCAGCACAATATTCTCCGAGGCAAATTCCAGTATCTATTCCATCACACTCTCAAAGACAACAACTGGAGGAGGACAGAAGAAAACGTGAACAAGAGGAGCAAAGAAAGCAGCAAGAAGATAATAGAAGACGTGAACAAGAAGACAGTAGAAAACGTGAAGAACAATCGAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAAAAAAGCTCAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCAAAAGATAATCGTCATCCACCAAAATCAAACAGAACCAAAAGAGAGATCACAGACCATCGAGCAATCTTCCAACCACTACCCCTACCAGATTACAATGAATACTTAAAAATAAAACAAGACTGTGACAATCTCCCAAGTTATGAAGCTTTCAAGAATAGCAGAGATGGATGTGATTCGCTCACAAGTTATACAAATTTCATCAACAGCATTGCAAACTATGAGAAAAATCAACAACACTTTAATTTATCTCAAACCTGGAGACCTCTACCATTCCCCGGCTACGAAGAATATTTGAG</canonical>
            <polymorphic>GTATTGTTATTGAAACAAAAGTTTACTCACATTATAATCAAACCAAGCCAACTAATATTATGGCTGAAATGAAAAATTGTAAGTATCAAGACGGTTTTTGTGAGATTAAGAAAAATGAAATCGTCACTTGGGATGTCAACAGAGAGCAAAAATGTCAATACATCTCGATTGGAATACTAGATGGAATGTATAGCAACAAACTTTGGGTTAACAATAAAAACCAAATTGCTCTCAACTTCCAATCAGATAAAACTATACAAGATTGCAATTCGAGTCTAATGATCAGCGATGAAGGCTTTGCTGTAAGAAGAATCAATAGAGCTGCAGCACAATATTCTCCGAGGCAAATTCCAGTATCTATTCCATCACACTCTCAAAGACAACAACTGGAGGAGGACAGAAGAAAACGTGAACAAGAGGAGCAAAGAAAGCAGCAAGAAGATAATAGAAGACGTGAACAAGAAGACAGTAGAAAACGTGAAGAACAATCGAGACGTGAYCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAAAAAAGCTCAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCAAAAGATAATCGTCATCCACCAAAATCAAACAGAACCAAAAGAGAGATCACAGACCATCGAGCAATCTTCCAACCACTACCCCTACCAGATTACAATGAATACTTAAAAATAAAACAAGACTGTGACAATCTCCCAAGTTATGAAGCTTTCAAGAATAGCAGAGATGGATGTGATTCGCTCACAAGTTATACAAATTTCATCAACAGCATTGCAAACTATGAGAAAAATCAACAACACTTTAATTTATCTCAAACCTGGAGACCTCTACCATTCCCCGGCTACGAAGAATATTTGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>373 330 175 122</canonical_bands>
                <polymorphic_bands>703 175 122</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>373 330 175 122</canonical_bands>
                <polymorphic_bands>703 175 122</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGACGTGAACAAGAAGACAGT</pcr_primer_p1>
		<pcr_primer_p2>CTCATCATGAACAGTCCAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGACGTGAACAAGAAGACAGTAGAAAACGTGAAGAACAATCGAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAAAAAAGCTCAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAG</canonical_amplicon>
		<polymorphic_amplicon>AAGACGTGAACAAGAAGACAGTAGAAAACGTGAAGAACAATCGAGACGTGAYCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAAAAAAGCTCAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29595</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>140916</contig_pos>
        <strand>+</strand>
        <context>AGACAAAAAC[A/T]GAATGAAGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAAC</left_flank>
        <right_flank>GAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAAGCCAACTAATATTATGGCTGAAATGAAAAATTGTAAGTATCAAGACGGTTTTTGTGAGATTAAGAAAAATGAAATCGTCACTTGGGATGTCAACAGAGAGCAAAAATGTCAATACATCTCGATTGGAATACTAGATGGAATGTATAGCAACAAACTTTGGGTTAACAATAAAAACCAAATTGCTCTCAACTTCCAATCAGATAAAACTATACAAGATTGCAATTCGAGTCTAATGATCAGCGATGAAGGCTTTGCTGTAAGAAGAATCAATAGAGCTGCAGCACAATATTCTCCGAGGCAAATTCCAGTATCTATTCCATCACACTCTCAAAGACAACAACTGGAGGAGGACAGAAGAAAACGTGAACAAGAGGAGCAAAGAAAGCAGCAAGAAGATAATAGAAGACGTGAACAAGAAGACAGTAGAAAACGTGAAGAACAATCGAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAAAAAAGCTCAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCAAAAGATAATCGTCATCCACCAAAATCAAACAGAACCAAAAGAGAGATCACAGACCATCGAGCAATCTTCCAACCACTACCCCTACCAGATTACAATGAATACTTAAAAATAAAACAAGACTGTGACAATCTCCCAAGTTATGAAGCTTTCAAGAATAGCAGAGATGGATGTGATTCGCTCACAAGTTATACAAATTTCATCAACAGCATTGCAAACTATGAGAAAAATCAACAACACTTTAATTTATCTCAAACCTGGAGACCTCTACCATTCCCCGGCTACGAAGAATATTTGAGTATTAAAGAAGATTGCAACATTCTCCCGACTTACGAGGAAT</canonical>
            <polymorphic>ACCAAGCCAACTAATATTATGGCTGAAATGAAAAATTGTAAGTATCAAGACGGTTTTTGTGAGATTAAGAAAAATGAAATCGTCACTTGGGATGTCAACAGAGAGCAAAAATGTCAATACATCTCGATTGGAATACTAGATGGAATGTATAGCAACAAACTTTGGGTTAACAATAAAAACCAAATTGCTCTCAACTTCCAATCAGATAAAACTATACAAGATTGCAATTCGAGTCTAATGATCAGCGATGAAGGCTTTGCTGTAAGAAGAATCAATAGAGCTGCAGCACAATATTCTCCGAGGCAAATTCCAGTATCTATTCCATCACACTCTCAAAGACAACAACTGGAGGAGGACAGAAGAAAACGTGAACAAGAGGAGCAAAGAAAGCAGCAAGAAGATAATAGAAGACGTGAACAAGAAGACAGTAGAAAACGTGAAGAACAATCGAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACWGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAAAAAAGCTCAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCAAAAGATAATCGTCATCCACCAAAATCAAACAGAACCAAAAGAGAGATCACAGACCATCGAGCAATCTTCCAACCACTACCCCTACCAGATTACAATGAATACTTAAAAATAAAACAAGACTGTGACAATCTCCCAAGTTATGAAGCTTTCAAGAATAGCAGAGATGGATGTGATTCGCTCACAAGTTATACAAATTTCATCAACAGCATTGCAAACTATGAGAAAAATCAACAACACTTTAATTTATCTCAAACCTGGAGACCTCTACCATTCCCCGGCTACGAAGAATATTTGAGTATTAAAGAAGATTGCAACATTCTCCCGACTTACGAGGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTAGAAAACGTGAAGAACAAT</pcr_primer_p1>
		<pcr_primer_p2>GATTATCTTTTGGTTTCTCATCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGTAGAAAACGTGAAGAACAATCGAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAAAAAAGCTCAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCAAAAGATAATC</canonical_amplicon>
		<polymorphic_amplicon>CAGTAGAAAACGTGAAGAACAATCGAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACWGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAAAAAAGCTCAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCAAAAGATAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29596</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>141000</contig_pos>
        <strand></strand>
        <context>gaaaagatta[A/G]raaagCYCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTA</left_flank>
        <right_flank>AAAAGCTCAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTGGGATGTCAACAGAGAGCAAAAATGTCAATACATCTCGATTGGAATACTAGATGGAATGTATAGCAACAAACTTTGGGTTAACAATAAAAACCAAATTGCTCTCAACTTCCAATCAGATAAAACTATACAAGATTGCAATTCGAGTCTAATGATCAGCGATGAAGGCTTTGCTGTAAGAAGAATCAATAGAGCTGCAGCACAATATTCTCCGAGGCAAATTCCAGTATCTATTCCATCACACTCTCAAAGACAACAACTGGAGGAGGACAGAAGAAAACGTGAACAAGAGGAGCAAAGAAAGCAGCAAGAAGATAATAGAAGACGTGAACAAGAAGACAGTAGAAAACGTGAAGAACAATCGAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAAAAAAGCTCAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCAAAAGATAATCGTCATCCACCAAAATCAAACAGAACCAAAAGAGAGATCACAGACCATCGAGCAATCTTCCAACCACTACCCCTACCAGATTACAATGAATACTTAAAAATAAAACAAGACTGTGACAATCTCCCAAGTTATGAAGCTTTCAAGAATAGCAGAGATGGATGTGATTCGCTCACAAGTTATACAAATTTCATCAACAGCATTGCAAACTATGAGAAAAATCAACAACACTTTAATTTATCTCAAACCTGGAGACCTCTACCATTCCCCGGCTACGAAGAATATTTGAGTATTAAAGAAGATTGCAACATTCTCCCGACTTACGAGGAATATAAAACAATCAGAGATAGCTGTCATGCATTTCCCAGTTATACAGACTTTATAAAAAGAATAGCAAAATATGAAATGTTCGAAA</canonical>
            <polymorphic>ACTTGGGATGTCAACAGAGAGCAAAAATGTCAATACATCTCGATTGGAATACTAGATGGAATGTATAGCAACAAACTTTGGGTTAACAATAAAAACCAAATTGCTCTCAACTTCCAATCAGATAAAACTATACAAGATTGCAATTCGAGTCTAATGATCAGCGATGAAGGCTTTGCTGTAAGAAGAATCAATAGAGCTGCAGCACAATATTCTCCGAGGCAAATTCCAGTATCTATTCCATCACACTCTCAAAGACAACAACTGGAGGAGGACAGAAGAAAACGTGAACAAGAGGAGCAAAGAAAGCAGCAAGAAGATAATAGAAGACGTGAACAAGAAGACAGTAGAAAACGTGAAGAACAATCGAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTARAAAAGCTCAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCAAAAGATAATCGTCATCCACCAAAATCAAACAGAACCAAAAGAGAGATCACAGACCATCGAGCAATCTTCCAACCACTACCCCTACCAGATTACAATGAATACTTAAAAATAAAACAAGACTGTGACAATCTCCCAAGTTATGAAGCTTTCAAGAATAGCAGAGATGGATGTGATTCGCTCACAAGTTATACAAATTTCATCAACAGCATTGCAAACTATGAGAAAAATCAACAACACTTTAATTTATCTCAAACCTGGAGACCTCTACCATTCCCCGGCTACGAAGAATATTTGAGTATTAAAGAAGATTGCAACATTCTCCCGACTTACGAGGAATATAAAACAATCAGAGATAGCTGTCATGCATTTCCCAGTTATACAGACTTTATAAAAAGAATAGCAAAATATGAAATGTTCGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>414 185 136 122 83 60</canonical_bands>
                <polymorphic_bands>599 136 122 83 60</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTAGAAAACGTGAAGAACAAT</pcr_primer_p1>
		<pcr_primer_p2>GATTATCTTTTGGTTTCTCATCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGTAGAAAACGTGAAGAACAATCGAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAAAAAAGCTCAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCAAAAGATAATC</canonical_amplicon>
		<polymorphic_amplicon>CAGTAGAAAACGTGAAGAACAATCGAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTARAAAAGCTCAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCAAAAGATAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29597</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>141001</contig_pos>
        <strand></strand>
        <context>aaaagattar[A/G]aaagCYCAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAA</left_flank>
        <right_flank>AAAGCTCAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGGGATGTCAACAGAGAGCAAAAATGTCAATACATCTCGATTGGAATACTAGATGGAATGTATAGCAACAAACTTTGGGTTAACAATAAAAACCAAATTGCTCTCAACTTCCAATCAGATAAAACTATACAAGATTGCAATTCGAGTCTAATGATCAGCGATGAAGGCTTTGCTGTAAGAAGAATCAATAGAGCTGCAGCACAATATTCTCCGAGGCAAATTCCAGTATCTATTCCATCACACTCTCAAAGACAACAACTGGAGGAGGACAGAAGAAAACGTGAACAAGAGGAGCAAAGAAAGCAGCAAGAAGATAATAGAAGACGTGAACAAGAAGACAGTAGAAAACGTGAAGAACAATCGAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAAAAAAGCTCAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCAAAAGATAATCGTCATCCACCAAAATCAAACAGAACCAAAAGAGAGATCACAGACCATCGAGCAATCTTCCAACCACTACCCCTACCAGATTACAATGAATACTTAAAAATAAAACAAGACTGTGACAATCTCCCAAGTTATGAAGCTTTCAAGAATAGCAGAGATGGATGTGATTCGCTCACAAGTTATACAAATTTCATCAACAGCATTGCAAACTATGAGAAAAATCAACAACACTTTAATTTATCTCAAACCTGGAGACCTCTACCATTCCCCGGCTACGAAGAATATTTGAGTATTAAAGAAGATTGCAACATTCTCCCGACTTACGAGGAATATAAAACAATCAGAGATAGCTGTCATGCATTTCCCAGTTATACAGACTTTATAAAAAGAATAGCAAAATATGAAATGTTCGAAAC</canonical>
            <polymorphic>CTTGGGATGTCAACAGAGAGCAAAAATGTCAATACATCTCGATTGGAATACTAGATGGAATGTATAGCAACAAACTTTGGGTTAACAATAAAAACCAAATTGCTCTCAACTTCCAATCAGATAAAACTATACAAGATTGCAATTCGAGTCTAATGATCAGCGATGAAGGCTTTGCTGTAAGAAGAATCAATAGAGCTGCAGCACAATATTCTCCGAGGCAAATTCCAGTATCTATTCCATCACACTCTCAAAGACAACAACTGGAGGAGGACAGAAGAAAACGTGAACAAGAGGAGCAAAGAAAGCAGCAAGAAGATAATAGAAGACGTGAACAAGAAGACAGTAGAAAACGTGAAGAACAATCGAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAARAAAGCTCAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCAAAAGATAATCGTCATCCACCAAAATCAAACAGAACCAAAAGAGAGATCACAGACCATCGAGCAATCTTCCAACCACTACCCCTACCAGATTACAATGAATACTTAAAAATAAAACAAGACTGTGACAATCTCCCAAGTTATGAAGCTTTCAAGAATAGCAGAGATGGATGTGATTCGCTCACAAGTTATACAAATTTCATCAACAGCATTGCAAACTATGAGAAAAATCAACAACACTTTAATTTATCTCAAACCTGGAGACCTCTACCATTCCCCGGCTACGAAGAATATTTGAGTATTAAAGAAGATTGCAACATTCTCCCGACTTACGAGGAATATAAAACAATCAGAGATAGCTGTCATGCATTTCCCAGTTATACAGACTTTATAAAAAGAATAGCAAAATATGAAATGTTCGAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTAGAAAACGTGAAGAACAAT</pcr_primer_p1>
		<pcr_primer_p2>GATTATCTTTTGGTTTCTCATCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGTAGAAAACGTGAAGAACAATCGAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAAAAAAGCTCAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCAAAAGATAATC</canonical_amplicon>
		<polymorphic_amplicon>CAGTAGAAAACGTGAAGAACAATCGAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAARAAAGCTCAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCAAAAGATAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29598</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>141007</contig_pos>
        <strand>+</strand>
        <context>ttarraaagC[C/T]CAGGATGARG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAAAAAAGC</left_flank>
        <right_flank>CAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTG</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTCAACAGAGAGCAAAAATGTCAATACATCTCGATTGGAATACTAGATGGAATGTATAGCAACAAACTTTGGGTTAACAATAAAAACCAAATTGCTCTCAACTTCCAATCAGATAAAACTATACAAGATTGCAATTCGAGTCTAATGATCAGCGATGAAGGCTTTGCTGTAAGAAGAATCAATAGAGCTGCAGCACAATATTCTCCGAGGCAAATTCCAGTATCTATTCCATCACACTCTCAAAGACAACAACTGGAGGAGGACAGAAGAAAACGTGAACAAGAGGAGCAAAGAAAGCAGCAAGAAGATAATAGAAGACGTGAACAAGAAGACAGTAGAAAACGTGAAGAACAATCGAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAAAAAAGCTCAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCAAAAGATAATCGTCATCCACCAAAATCAAACAGAACCAAAAGAGAGATCACAGACCATCGAGCAATCTTCCAACCACTACCCCTACCAGATTACAATGAATACTTAAAAATAAAACAAGACTGTGACAATCTCCCAAGTTATGAAGCTTTCAAGAATAGCAGAGATGGATGTGATTCGCTCACAAGTTATACAAATTTCATCAACAGCATTGCAAACTATGAGAAAAATCAACAACACTTTAATTTATCTCAAACCTGGAGACCTCTACCATTCCCCGGCTACGAAGAATATTTGAGTATTAAAGAAGATTGCAACATTCTCCCGACTTACGAGGAATATAAAACAATCAGAGATAGCTGTCATGCATTTCCCAGTTATACAGACTTTATAAAAAGAATAGCAAAATATGAAATGTTCGAAACAGGTAA</canonical>
            <polymorphic>ATGTCAACAGAGAGCAAAAATGTCAATACATCTCGATTGGAATACTAGATGGAATGTATAGCAACAAACTTTGGGTTAACAATAAAAACCAAATTGCTCTCAACTTCCAATCAGATAAAACTATACAAGATTGCAATTCGAGTCTAATGATCAGCGATGAAGGCTTTGCTGTAAGAAGAATCAATAGAGCTGCAGCACAATATTCTCCGAGGCAAATTCCAGTATCTATTCCATCACACTCTCAAAGACAACAACTGGAGGAGGACAGAAGAAAACGTGAACAAGAGGAGCAAAGAAAGCAGCAAGAAGATAATAGAAGACGTGAACAAGAAGACAGTAGAAAACGTGAAGAACAATCGAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAAAAAAGCYCAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCAAAAGATAATCGTCATCCACCAAAATCAAACAGAACCAAAAGAGAGATCACAGACCATCGAGCAATCTTCCAACCACTACCCCTACCAGATTACAATGAATACTTAAAAATAAAACAAGACTGTGACAATCTCCCAAGTTATGAAGCTTTCAAGAATAGCAGAGATGGATGTGATTCGCTCACAAGTTATACAAATTTCATCAACAGCATTGCAAACTATGAGAAAAATCAACAACACTTTAATTTATCTCAAACCTGGAGACCTCTACCATTCCCCGGCTACGAAGAATATTTGAGTATTAAAGAAGATTGCAACATTCTCCCGACTTACGAGGAATATAAAACAATCAGAGATAGCTGTCATGCATTTCCCAGTTATACAGACTTTATAAAAAGAATAGCAAAATATGAAATGTTCGAAACAGGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>309 211 207 189 72 12</canonical_bands>
                <polymorphic_bands>321 211 207 189 72</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>309 207 163 133 78 72 26 12</canonical_bands>
                <polymorphic_bands>321 207 163 133 78 72 26</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>326 171 164 108 107 57 35 32</canonical_bands>
                <polymorphic_bands>326 171 165 164 107 35 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTAGAAAACGTGAAGAACAAT</pcr_primer_p1>
		<pcr_primer_p2>GATTATCTTTTGGTTTCTCATCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGTAGAAAACGTGAAGAACAATCGAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAAAAAAGCTCAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCAAAAGATAATC</canonical_amplicon>
		<polymorphic_amplicon>CAGTAGAAAACGTGAAGAACAATCGAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAAAAAAGCYCAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCAAAAGATAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29599</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>141016</contig_pos>
        <strand></strand>
        <context>CYCAGGATGA[A/G]GCTGAAAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAAAAAAGCTCAGGATGA</left_flank>
        <right_flank>GCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAGCAAAAATGTCAATACATCTCGATTGGAATACTAGATGGAATGTATAGCAACAAACTTTGGGTTAACAATAAAAACCAAATTGCTCTCAACTTCCAATCAGATAAAACTATACAAGATTGCAATTCGAGTCTAATGATCAGCGATGAAGGCTTTGCTGTAAGAAGAATCAATAGAGCTGCAGCACAATATTCTCCGAGGCAAATTCCAGTATCTATTCCATCACACTCTCAAAGACAACAACTGGAGGAGGACAGAAGAAAACGTGAACAAGAGGAGCAAAGAAAGCAGCAAGAAGATAATAGAAGACGTGAACAAGAAGACAGTAGAAAACGTGAAGAACAATCGAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAAAAAAGCTCAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCAAAAGATAATCGTCATCCACCAAAATCAAACAGAACCAAAAGAGAGATCACAGACCATCGAGCAATCTTCCAACCACTACCCCTACCAGATTACAATGAATACTTAAAAATAAAACAAGACTGTGACAATCTCCCAAGTTATGAAGCTTTCAAGAATAGCAGAGATGGATGTGATTCGCTCACAAGTTATACAAATTTCATCAACAGCATTGCAAACTATGAGAAAAATCAACAACACTTTAATTTATCTCAAACCTGGAGACCTCTACCATTCCCCGGCTACGAAGAATATTTGAGTATTAAAGAAGATTGCAACATTCTCCCGACTTACGAGGAATATAAAACAATCAGAGATAGCTGTCATGCATTTCCCAGTTATACAGACTTTATAAAAAGAATAGCAAAATATGAAATGTTCGAAACAGGTAAATTAAGAAG</canonical>
            <polymorphic>GAGAGCAAAAATGTCAATACATCTCGATTGGAATACTAGATGGAATGTATAGCAACAAACTTTGGGTTAACAATAAAAACCAAATTGCTCTCAACTTCCAATCAGATAAAACTATACAAGATTGCAATTCGAGTCTAATGATCAGCGATGAAGGCTTTGCTGTAAGAAGAATCAATAGAGCTGCAGCACAATATTCTCCGAGGCAAATTCCAGTATCTATTCCATCACACTCTCAAAGACAACAACTGGAGGAGGACAGAAGAAAACGTGAACAAGAGGAGCAAAGAAAGCAGCAAGAAGATAATAGAAGACGTGAACAAGAAGACAGTAGAAAACGTGAAGAACAATCGAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAAAAAAGCTCAGGATGARGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCAAAAGATAATCGTCATCCACCAAAATCAAACAGAACCAAAAGAGAGATCACAGACCATCGAGCAATCTTCCAACCACTACCCCTACCAGATTACAATGAATACTTAAAAATAAAACAAGACTGTGACAATCTCCCAAGTTATGAAGCTTTCAAGAATAGCAGAGATGGATGTGATTCGCTCACAAGTTATACAAATTTCATCAACAGCATTGCAAACTATGAGAAAAATCAACAACACTTTAATTTATCTCAAACCTGGAGACCTCTACCATTCCCCGGCTACGAAGAATATTTGAGTATTAAAGAAGATTGCAACATTCTCCCGACTTACGAGGAATATAAAACAATCAGAGATAGCTGTCATGCATTTCCCAGTTATACAGACTTTATAAAAAGAATAGCAAAATATGAAATGTTCGAAACAGGTAAATTAAGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>309 211 207 180 81 12</canonical_bands>
                <polymorphic_bands>309 219 211 180 81</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>309 207 154 133 81 78 26 12</canonical_bands>
                <polymorphic_bands>309 219 154 133 81 78 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTAGAAAACGTGAAGAACAAT</pcr_primer_p1>
		<pcr_primer_p2>GATTATCTTTTGGTTTCTCATCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGTAGAAAACGTGAAGAACAATCGAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAAAAAAGCTCAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCAAAAGATAATC</canonical_amplicon>
		<polymorphic_amplicon>CAGTAGAAAACGTGAAGAACAATCGAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAAAAAAGCTCAGGATGARGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCAAAAGATAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29600</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>141029</contig_pos>
        <strand></strand>
        <context>TGAAAGAAAA[C/T]TAATACAACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAGAAGCAAGAAAAGATTAAAAAAGCTCAGGATGAAGCTGAAAGAAAA</left_flank>
        <right_flank>TAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAATACATCTCGATTGGAATACTAGATGGAATGTATAGCAACAAACTTTGGGTTAACAATAAAAACCAAATTGCTCTCAACTTCCAATCAGATAAAACTATACAAGATTGCAATTCGAGTCTAATGATCAGCGATGAAGGCTTTGCTGTAAGAAGAATCAATAGAGCTGCAGCACAATATTCTCCGAGGCAAATTCCAGTATCTATTCCATCACACTCTCAAAGACAACAACTGGAGGAGGACAGAAGAAAACGTGAACAAGAGGAGCAAAGAAAGCAGCAAGAAGATAATAGAAGACGTGAACAAGAAGACAGTAGAAAACGTGAAGAACAATCGAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAAAAAAGCTCAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCAAAAGATAATCGTCATCCACCAAAATCAAACAGAACCAAAAGAGAGATCACAGACCATCGAGCAATCTTCCAACCACTACCCCTACCAGATTACAATGAATACTTAAAAATAAAACAAGACTGTGACAATCTCCCAAGTTATGAAGCTTTCAAGAATAGCAGAGATGGATGTGATTCGCTCACAAGTTATACAAATTTCATCAACAGCATTGCAAACTATGAGAAAAATCAACAACACTTTAATTTATCTCAAACCTGGAGACCTCTACCATTCCCCGGCTACGAAGAATATTTGAGTATTAAAGAAGATTGCAACATTCTCCCGACTTACGAGGAATATAAAACAATCAGAGATAGCTGTCATGCATTTCCCAGTTATACAGACTTTATAAAAAGAATAGCAAAATATGAAATGTTCGAAACAGGTAAATTAAGAAGAAAAAGAGAATTA</canonical>
            <polymorphic>TCAATACATCTCGATTGGAATACTAGATGGAATGTATAGCAACAAACTTTGGGTTAACAATAAAAACCAAATTGCTCTCAACTTCCAATCAGATAAAACTATACAAGATTGCAATTCGAGTCTAATGATCAGCGATGAAGGCTTTGCTGTAAGAAGAATCAATAGAGCTGCAGCACAATATTCTCCGAGGCAAATTCCAGTATCTATTCCATCACACTCTCAAAGACAACAACTGGAGGAGGACAGAAGAAAACGTGAACAAGAGGAGCAAAGAAAGCAGCAAGAAGATAATAGAAGACGTGAACAAGAAGACAGTAGAAAACGTGAAGAACAATCGAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAAAAAAGCTCAGGATGAAGCTGAAAGAAAAYTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCAAAAGATAATCGTCATCCACCAAAATCAAACAGAACCAAAAGAGAGATCACAGACCATCGAGCAATCTTCCAACCACTACCCCTACCAGATTACAATGAATACTTAAAAATAAAACAAGACTGTGACAATCTCCCAAGTTATGAAGCTTTCAAGAATAGCAGAGATGGATGTGATTCGCTCACAAGTTATACAAATTTCATCAACAGCATTGCAAACTATGAGAAAAATCAACAACACTTTAATTTATCTCAAACCTGGAGACCTCTACCATTCCCCGGCTACGAAGAATATTTGAGTATTAAAGAAGATTGCAACATTCTCCCGACTTACGAGGAATATAAAACAATCAGAGATAGCTGTCATGCATTTCCCAGTTATACAGACTTTATAAAAAGAATAGCAAAATATGAAATGTTCGAAACAGGTAAATTAAGAAGAAAAAGAGAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTAGAAAACGTGAAGAACAAT</pcr_primer_p1>
		<pcr_primer_p2>GATTATCTTTTGGTTTCTCATCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGTAGAAAACGTGAAGAACAATCGAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAAAAAAGCTCAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCAAAAGATAATC</canonical_amplicon>
		<polymorphic_amplicon>CAGTAGAAAACGTGAAGAACAATCGAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAAAAAAGCTCAGGATGAAGCTGAAAGAAAAYTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCAAAAGATAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29601</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>141286</contig_pos>
        <strand>+</strand>
        <context>TCATCAACAG[C/T]ATTGCWAACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCAGAGATGGATGTGATTCGCTCACAAGTTATACAAATTTCATCAACAG</left_flank>
        <right_flank>ATTGCAAACTATGAGAAAAATCAACAACACTTTAATTTATCTCAAACCTG</right_flank>
        <qual_score>130</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAAGAGGAGCAAAGAAAGCAGCAAGAAGATAATAGAAGACGTGAACAAGAAGACAGTAGAAAACGTGAAGAACAATCGAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAAAAAAGCTCAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCAAAAGATAATCGTCATCCACCAAAATCAAACAGAACCAAAAGAGAGATCACAGACCATCGAGCAATCTTCCAACCACTACCCCTACCAGATTACAATGAATACTTAAAAATAAAACAAGACTGTGACAATCTCCCAAGTTATGAAGCTTTCAAGAATAGCAGAGATGGATGTGATTCGCTCACAAGTTATACAAATTTCATCAACAGCATTGCAAACTATGAGAAAAATCAACAACACTTTAATTTATCTCAAACCTGGAGACCTCTACCATTCCCCGGCTACGAAGAATATTTGAGTATTAAAGAAGATTGCAACATTCTCCCGACTTACGAGGAATATAAAACAATCAGAGATAGCTGTCATGCATTTCCCAGTTATACAGACTTTATAAAAAGAATAGCAAAATATGAAATGTTCGAAACAGGTAAATTAAGAAGAAAAAGAGAATTATACTCTGACTTCCAAGCTGCAGGAGAATTTCAATATCTAGAAAACCAATCGAACAATCTAATACGACATACTACTGAAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGA</canonical>
            <polymorphic>AACAAGAGGAGCAAAGAAAGCAGCAAGAAGATAATAGAAGACGTGAACAAGAAGACAGTAGAAAACGTGAAGAACAATCGAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAAAAAAGCTCAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCAAAAGATAATCGTCATCCACCAAAATCAAACAGAACCAAAAGAGAGATCACAGACCATCGAGCAATCTTCCAACCACTACCCCTACCAGATTACAATGAATACTTAAAAATAAAACAAGACTGTGACAATCTCCCAAGTTATGAAGCTTTCAAGAATAGCAGAGATGGATGTGATTCGCTCACAAGTTATACAAATTTCATCAACAGYATTGCAAACTATGAGAAAAATCAACAACACTTTAATTTATCTCAAACCTGGAGACCTCTACCATTCCCCGGCTACGAAGAATATTTGAGTATTAAAGAAGATTGCAACATTCTCCCGACTTACGAGGAATATAAAACAATCAGAGATAGCTGTCATGCATTTCCCAGTTATACAGACTTTATAAAAAGAATAGCAAAATATGAAATGTTCGAAACAGGTAAATTAAGAAGAAAAAGAGAATTATACTCTGACTTCCAAGCTGCAGGAGAATTTCAATATCTAGAAAACCAATCGAACAATCTAATACGACATACTACTGAAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTTCAAGAATAGCAGAGAT</pcr_primer_p1>
		<pcr_primer_p2>AAAGTCTGTATAACTGGGAAATG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAGCTTTCAAGAATAGCAGAGATGGATGTGATTCGCTCACAAGTTATACAAATTTCATCAACAGCATTGCAAACTATGAGAAAAATCAACAACACTTTAATTTATCTCAAACCTGGAGACCTCTACCATTCCCCGGCTACGAAGAATATTTGAGTATTAAAGAAGATTGCAACATTCTCCCGACTTACGAGGAATATAAAACAATCAGAGATAGCTGTCATGCATTTCCCAGTTATACAGACTTT</canonical_amplicon>
		<polymorphic_amplicon>AAGCTTTCAAGAATAGCAGAGATGGATGTGATTCGCTCACAAGTTATACAAATTTCATCAACAGYATTGCAAACTATGAGAAAAATCAACAACACTTTAATTTATCTCAAACCTGGAGACCTCTACCATTCCCCGGCTACGAAGAATATTTGAGTATTAAAGAAGATTGCAACATTCTCCCGACTTACGAGGAATATAAAACAATCAGAGATAGCTGTCATGCATTTCCCAGTTATACAGACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29602</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>141292</contig_pos>
        <strand>+</strand>
        <context>ACAGYATTGC[A/T]AACTATGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATGGATGTGATTCGCTCACAAGTTATACAAATTTCATCAACAGCATTGC</left_flank>
        <right_flank>AACTATGAGAAAAATCAACAACACTTTAATTTATCTCAAACCTGGAGACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAGCAAAGAAAGCAGCAAGAAGATAATAGAAGACGTGAACAAGAAGACAGTAGAAAACGTGAAGAACAATCGAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAAAAAAGCTCAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCAAAAGATAATCGTCATCCACCAAAATCAAACAGAACCAAAAGAGAGATCACAGACCATCGAGCAATCTTCCAACCACTACCCCTACCAGATTACAATGAATACTTAAAAATAAAACAAGACTGTGACAATCTCCCAAGTTATGAAGCTTTCAAGAATAGCAGAGATGGATGTGATTCGCTCACAAGTTATACAAATTTCATCAACAGCATTGCAAACTATGAGAAAAATCAACAACACTTTAATTTATCTCAAACCTGGAGACCTCTACCATTCCCCGGCTACGAAGAATATTTGAGTATTAAAGAAGATTGCAACATTCTCCCGACTTACGAGGAATATAAAACAATCAGAGATAGCTGTCATGCATTTCCCAGTTATACAGACTTTATAAAAAGAATAGCAAAATATGAAATGTTCGAAACAGGTAAATTAAGAAGAAAAAGAGAATTATACTCTGACTTCCAAGCTGCAGGAGAATTTCAATATCTAGAAAACCAATCGAACAATCTAATACGACATACTACTGAAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTAT</canonical>
            <polymorphic>AGGAGCAAAGAAAGCAGCAAGAAGATAATAGAAGACGTGAACAAGAAGACAGTAGAAAACGTGAAGAACAATCGAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAAAAAAGCTCAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCAAAAGATAATCGTCATCCACCAAAATCAAACAGAACCAAAAGAGAGATCACAGACCATCGAGCAATCTTCCAACCACTACCCCTACCAGATTACAATGAATACTTAAAAATAAAACAAGACTGTGACAATCTCCCAAGTTATGAAGCTTTCAAGAATAGCAGAGATGGATGTGATTCGCTCACAAGTTATACAAATTTCATCAACAGCATTGCWAACTATGAGAAAAATCAACAACACTTTAATTTATCTCAAACCTGGAGACCTCTACCATTCCCCGGCTACGAAGAATATTTGAGTATTAAAGAAGATTGCAACATTCTCCCGACTTACGAGGAATATAAAACAATCAGAGATAGCTGTCATGCATTTCCCAGTTATACAGACTTTATAAAAAGAATAGCAAAATATGAAATGTTCGAAACAGGTAAATTAAGAAGAAAAAGAGAATTATACTCTGACTTCCAAGCTGCAGGAGAATTTCAATATCTAGAAAACCAATCGAACAATCTAATACGACATACTACTGAAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>498 211 105 100 53 33</canonical_bands>
                <polymorphic_bands>598 211 105 53 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTTCAAGAATAGCAGAGAT</pcr_primer_p1>
		<pcr_primer_p2>AAAGTCTGTATAACTGGGAAATG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAGCTTTCAAGAATAGCAGAGATGGATGTGATTCGCTCACAAGTTATACAAATTTCATCAACAGCATTGCAAACTATGAGAAAAATCAACAACACTTTAATTTATCTCAAACCTGGAGACCTCTACCATTCCCCGGCTACGAAGAATATTTGAGTATTAAAGAAGATTGCAACATTCTCCCGACTTACGAGGAATATAAAACAATCAGAGATAGCTGTCATGCATTTCCCAGTTATACAGACTTT</canonical_amplicon>
		<polymorphic_amplicon>AAGCTTTCAAGAATAGCAGAGATGGATGTGATTCGCTCACAAGTTATACAAATTTCATCAACAGCATTGCWAACTATGAGAAAAATCAACAACACTTTAATTTATCTCAAACCTGGAGACCTCTACCATTCCCCGGCTACGAAGAATATTTGAGTATTAAAGAAGATTGCAACATTCTCCCGACTTACGAGGAATATAAAACAATCAGAGATAGCTGTCATGCATTTCCCAGTTATACAGACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29603</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>141319</contig_pos>
        <strand></strand>
        <context>AACAACACTT[T/G]AATTTATCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ACAAATTTCATCAACAGCATTGCAAACTATGAGAAAAATCAACAACACTT</left_flank>
        <right_flank>AATTTATCTCAAACCTGGAGACCTCTACCATTCCCCGGCTACGAAGAATA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGAAGACGTGAACAAGAAGACAGTAGAAAACGTGAAGAACAATCGAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAAAAAAGCTCAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCAAAAGATAATCGTCATCCACCAAAATCAAACAGAACCAAAAGAGAGATCACAGACCATCGAGCAATCTTCCAACCACTACCCCTACCAGATTACAATGAATACTTAAAAATAAAACAAGACTGTGACAATCTCCCAAGTTATGAAGCTTTCAAGAATAGCAGAGATGGATGTGATTCGCTCACAAGTTATACAAATTTCATCAACAGCATTGCAAACTATGAGAAAAATCAACAACACTTTAATTTATCTCAAACCTGGAGACCTCTACCATTCCCCGGCTACGAAGAATATTTGAGTATTAAAGAAGATTGCAACATTCTCCCGACTTACGAGGAATATAAAACAATCAGAGATAGCTGTCATGCATTTCCCAGTTATACAGACTTTATAAAAAGAATAGCAAAATATGAAATGTTCGAAACAGGTAAATTAAGAAGAAAAAGAGAATTATACTCTGACTTCCAAGCTGCAGGAGAATTTCAATATCTAGAAAACCAATCGAACAATCTAATACGACATACTACTGAAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAA</canonical>
            <polymorphic>ATAGAAGACGTGAACAAGAAGACAGTAGAAAACGTGAAGAACAATCGAGACGTGACCAAGAAGATGCTAGAAGACGCGATCAAGAAAGACAAAAACTGAATGAAGCAGATTTCGAAAAAAGGAAACAAGAAAAATTGAAGAGAGAAGAAGAAACGGAGAAAAAGAAGCAAGAAAAGATTAAAAAAGCTCAGGATGAAGCTGAAAGAAAACTAATACAACAACGGCAAGAAGAAGATTGGACTGTTCATGATGAGAAACCAAAAGATAATCGTCATCCACCAAAATCAAACAGAACCAAAAGAGAGATCACAGACCATCGAGCAATCTTCCAACCACTACCCCTACCAGATTACAATGAATACTTAAAAATAAAACAAGACTGTGACAATCTCCCAAGTTATGAAGCTTTCAAGAATAGCAGAGATGGATGTGATTCGCTCACAAGTTATACAAATTTCATCAACAGCATTGCAAACTATGAGAAAAATCAACAACACTTKAATTTATCTCAAACCTGGAGACCTCTACCATTCCCCGGCTACGAAGAATATTTGAGTATTAAAGAAGATTGCAACATTCTCCCGACTTACGAGGAATATAAAACAATCAGAGATAGCTGTCATGCATTTCCCAGTTATACAGACTTTATAAAAAGAATAGCAAAATATGAAATGTTCGAAACAGGTAAATTAAGAAGAAAAAGAGAATTATACTCTGACTTCCAAGCTGCAGGAGAATTTCAATATCTAGAAAACCAATCGAACAATCTAATACGACATACTACTGAAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>205 185 178 136 131 105 60</canonical_bands>
                <polymorphic_bands>205 196 185 178 131 105</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATTCGCTCACAAGTTATACA</pcr_primer_p1>
		<pcr_primer_p2>CGAACATTTCATATTTTGCTATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGATTCGCTCACAAGTTATACAAATTTCATCAACAGCATTGCAAACTATGAGAAAAATCAACAACACTTTAATTTATCTCAAACCTGGAGACCTCTACCATTCCCCGGCTACGAAGAATATTTGAGTATTAAAGAAGATTGCAACATTCTCCCGACTTACGAGGAATATAAAACAATCAGAGATAGCTGTCATGCATTTCCCAGTTATACAGACTTTATAAAAAGAATAGCAAAATATGAAATGTTCG</canonical_amplicon>
		<polymorphic_amplicon>TGATTCGCTCACAAGTTATACAAATTTCATCAACAGCATTGCAAACTATGAGAAAAATCAACAACACTTKAATTTATCTCAAACCTGGAGACCTCTACCATTCCCCGGCTACGAAGAATATTTGAGTATTAAAGAAGATTGCAACATTCTCCCGACTTACGAGGAATATAAAACAATCAGAGATAGCTGTCATGCATTTCCCAGTTATACAGACTTTATAAAAAGAATAGCAAAATATGAAATGTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29604</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>141881</contig_pos>
        <strand></strand>
        <context>TGGAGATAAA[G/A]TTTGGTATTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAA</left_flank>
        <right_flank>TTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAGATTGCAACATTCTCCCGACTTACGAGGAATATAAAACAATCAGAGATAGCTGTCATGCATTTCCCAGTTATACAGACTTTATAAAAAGAATAGCAAAATATGAAATGTTCGAAACAGGTAAATTAAGAAGAAAAAGAGAATTATACTCTGACTTCCAAGCTGCAGGAGAATTTCAATATCTAGAAAACCAATCGAACAATCTAATACGACATACTACTGAAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTATTCATTCTCTCA</canonical>
            <polymorphic>AGAAGATTGCAACATTCTCCCGACTTACGAGGAATATAAAACAATCAGAGATAGCTGTCATGCATTTCCCAGTTATACAGACTTTATAAAAAGAATAGCAAAATATGAAATGTTCGAAACAGGTAAATTAAGAAGAAAAAGAGAATTATACTCTGACTTCCAAGCTGCAGGAGAATTTCAATATCTAGAAAACCAATCGAACAATCTAATACGACATACTACTGAAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAARTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTATTCATTCTCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAGTTAAACTCATCGATTCTC</pcr_primer_p1>
		<pcr_primer_p2>TAAAATCAATCATGGGATGAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTA</canonical_amplicon>
		<polymorphic_amplicon>CAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAARTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29605</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>141898</contig_pos>
        <strand></strand>
        <context>ATTATAAGAA[T/A]GATTATTCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAA</left_flank>
        <right_flank>GATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGAT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCCGACTTACGAGGAATATAAAACAATCAGAGATAGCTGTCATGCATTTCCCAGTTATACAGACTTTATAAAAAGAATAGCAAAATATGAAATGTTCGAAACAGGTAAATTAAGAAGAAAAAGAGAATTATACTCTGACTTCCAAGCTGCAGGAGAATTTCAATATCTAGAAAACCAATCGAACAATCTAATACGACATACTACTGAAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTATTCATTCTCTCACTGTCGATTAATTTTTA</canonical>
            <polymorphic>TCCCGACTTACGAGGAATATAAAACAATCAGAGATAGCTGTCATGCATTTCCCAGTTATACAGACTTTATAAAAAGAATAGCAAAATATGAAATGTTCGAAACAGGTAAATTAAGAAGAAAAAGAGAATTATACTCTGACTTCCAAGCTGCAGGAGAATTTCAATATCTAGAAAACCAATCGAACAATCTAATACGACATACTACTGAAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAAWGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTATTCATTCTCTCACTGTCGATTAATTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAGTTAAACTCATCGATTCTC</pcr_primer_p1>
		<pcr_primer_p2>TAAAATCAATCATGGGATGAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTA</canonical_amplicon>
		<polymorphic_amplicon>CAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAAWGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29606</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>142000</contig_pos>
        <strand></strand>
        <context>AGTTTGATTT[G/A]AAATTCYTRG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTT</left_flank>
        <right_flank>AAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGGTAAATTAAGAAGAAAAAGAGAATTATACTCTGACTTCCAAGCTGCAGGAGAATTTCAATATCTAGAAAACCAATCGAACAATCTAATACGACATACTACTGAAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTATTCATTCTCTCACTGTCGATTAATTTTTACCTTATTAAATGAGATTCTTTAACACCCAAGAACAAAGTTCAACTTCTAGTTATGTTATTAATAGTCCAAAAGAAAACAATCAGATAAAATTAATAGAAAAT</canonical>
            <polymorphic>CAGGTAAATTAAGAAGAAAAAGAGAATTATACTCTGACTTCCAAGCTGCAGGAGAATTTCAATATCTAGAAAACCAATCGAACAATCTAATACGACATACTACTGAAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTRAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTATTCATTCTCTCACTGTCGATTAATTTTTACCTTATTAAATGAGATTCTTTAACACCCAAGAACAAAGTTCAACTTCTAGTTATGTTATTAATAGTCCAAAAGAAAACAATCAGATAAAATTAATAGAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTCAGGAGGTGTCATATCAA</pcr_primer_p1>
		<pcr_primer_p2>GGGTAAAGTAGAATCCTGGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCC</canonical_amplicon>
		<polymorphic_amplicon>TTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTRAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29607</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>142007</contig_pos>
        <strand></strand>
        <context>TTTRAAATTC[C/T]TRGATGATAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTC</left_flank>
        <right_flank>TAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTAAGAAGAAAAAGAGAATTATACTCTGACTTCCAAGCTGCAGGAGAATTTCAATATCTAGAAAACCAATCGAACAATCTAATACGACATACTACTGAAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTATTCATTCTCTCACTGTCGATTAATTTTTACCTTATTAAATGAGATTCTTTAACACCCAAGAACAAAGTTCAACTTCTAGTTATGTTATTAATAGTCCAAAAGAAAACAATCAGATAAAATTAATAGAAAATGCAAACC</canonical>
            <polymorphic>ATTAAGAAGAAAAAGAGAATTATACTCTGACTTCCAAGCTGCAGGAGAATTTCAATATCTAGAAAACCAATCGAACAATCTAATACGACATACTACTGAAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCYTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTATTCATTCTCTCACTGTCGATTAATTTTTACCTTATTAAATGAGATTCTTTAACACCCAAGAACAAAGTTCAACTTCTAGTTATGTTATTAATAGTCCAAAAGAAAACAATCAGATAAAATTAATAGAAAATGCAAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>441 368 70 62 59</canonical_bands>
                <polymorphic_bands>511 368 62 59</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATTCAGGAGGTGTCATATCAA</pcr_primer_p1>
		<pcr_primer_p2>GGGTAAAGTAGAATCCTGGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCC</canonical_amplicon>
		<polymorphic_amplicon>TTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCYTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29608</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>142009</contig_pos>
        <strand></strand>
        <context>TRAAATTCYT[A/G]GATGATAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCT</left_flank>
        <right_flank>GATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAGAAGAAAAAGAGAATTATACTCTGACTTCCAAGCTGCAGGAGAATTTCAATATCTAGAAAACCAATCGAACAATCTAATACGACATACTACTGAAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTATTCATTCTCTCACTGTCGATTAATTTTTACCTTATTAAATGAGATTCTTTAACACCCAAGAACAAAGTTCAACTTCTAGTTATGTTATTAATAGTCCAAAAGAAAACAATCAGATAAAATTAATAGAAAATGCAAACCCT</canonical>
            <polymorphic>TAAGAAGAAAAAGAGAATTATACTCTGACTTCCAAGCTGCAGGAGAATTTCAATATCTAGAAAACCAATCGAACAATCTAATACGACATACTACTGAAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTRGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTATTCATTCTCTCACTGTCGATTAATTTTTACCTTATTAAATGAGATTCTTTAACACCCAAGAACAAAGTTCAACTTCTAGTTATGTTATTAATAGTCCAAAAGAAAACAATCAGATAAAATTAATAGAAAATGCAAACCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>441 368 70 64 57</canonical_bands>
                <polymorphic_bands>511 368 64 57</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATTCAGGAGGTGTCATATCAA</pcr_primer_p1>
		<pcr_primer_p2>GGGTAAAGTAGAATCCTGGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCC</canonical_amplicon>
		<polymorphic_amplicon>TTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTRGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29609</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>142030</contig_pos>
        <strand></strand>
        <context>TAGTTTTTCA[T/A]GAACACATYT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCA</left_flank>
        <right_flank>GAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCTGACTTCCAAGCTGCAGGAGAATTTCAATATCTAGAAAACCAATCGAACAATCTAATACGACATACTACTGAAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTATTCATTCTCTCACTGTCGATTAATTTTTACCTTATTAAATGAGATTCTTTAACACCCAAGAACAAAGTTCAACTTCTAGTTATGTTATTAATAGTCCAAAAGAAAACAATCAGATAAAATTAATAGAAAATGCAAACCCTCAAAAAGAATTTCCAAGCACA</canonical>
            <polymorphic>ACTCTGACTTCCAAGCTGCAGGAGAATTTCAATATCTAGAAAACCAATCGAACAATCTAATACGACATACTACTGAAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCAWGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTATTCATTCTCTCACTGTCGATTAATTTTTACCTTATTAAATGAGATTCTTTAACACCCAAGAACAAAGTTCAACTTCTAGTTATGTTATTAATAGTCCAAAAGAAAACAATCAGATAAAATTAATAGAAAATGCAAACCCTCAAAAAGAATTTCCAAGCACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>413 380 122 85</canonical_bands>
                <polymorphic_bands>413 380 207</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATTCAGGAGGTGTCATATCAA</pcr_primer_p1>
		<pcr_primer_p2>GGGTAAAGTAGAATCCTGGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCC</canonical_amplicon>
		<polymorphic_amplicon>TTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCAWGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29610</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>142039</contig_pos>
        <strand></strand>
        <context>AWGAACACAT[C/T]TTGTYAGACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACAT</left_flank>
        <right_flank>TTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAAGCTGCAGGAGAATTTCAATATCTAGAAAACCAATCGAACAATCTAATACGACATACTACTGAAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTATTCATTCTCTCACTGTCGATTAATTTTTACCTTATTAAATGAGATTCTTTAACACCCAAGAACAAAGTTCAACTTCTAGTTATGTTATTAATAGTCCAAAAGAAAACAATCAGATAAAATTAATAGAAAATGCAAACCCTCAAAAAGAATTTCCAAGCACAAAAAACGAG</canonical>
            <polymorphic>TCCAAGCTGCAGGAGAATTTCAATATCTAGAAAACCAATCGAACAATCTAATACGACATACTACTGAAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATYTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTATTCATTCTCTCACTGTCGATTAATTTTTACCTTATTAAATGAGATTCTTTAACACCCAAGAACAAAGTTCAACTTCTAGTTATGTTATTAATAGTCCAAAAGAAAACAATCAGATAAAATTAATAGAAAATGCAAACCCTCAAAAAGAATTTCCAAGCACAAAAAACGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTCAGGAGGTGTCATATCAA</pcr_primer_p1>
		<pcr_primer_p2>GGGTAAAGTAGAATCCTGGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCC</canonical_amplicon>
		<polymorphic_amplicon>TTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATYTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29611</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>142044</contig_pos>
        <strand></strand>
        <context>CACATYTTGT[C/T]AGACTTGWAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGT</left_flank>
        <right_flank>AGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTGCAGGAGAATTTCAATATCTAGAAAACCAATCGAACAATCTAATACGACATACTACTGAAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTATTCATTCTCTCACTGTCGATTAATTTTTACCTTATTAAATGAGATTCTTTAACACCCAAGAACAAAGTTCAACTTCTAGTTATGTTATTAATAGTCCAAAAGAAAACAATCAGATAAAATTAATAGAAAATGCAAACCCTCAAAAAGAATTTCCAAGCACAAAAAACGAGGAAAC</canonical>
            <polymorphic>GCTGCAGGAGAATTTCAATATCTAGAAAACCAATCGAACAATCTAATACGACATACTACTGAAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTYAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTATTCATTCTCTCACTGTCGATTAATTTTTACCTTATTAAATGAGATTCTTTAACACCCAAGAACAAAGTTCAACTTCTAGTTATGTTATTAATAGTCCAAAAGAAAACAATCAGATAAAATTAATAGAAAATGCAAACCCTCAAAAAGAATTTCCAAGCACAAAAAACGAGGAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>436 203 183 115 63</canonical_bands>
                <polymorphic_bands>639 183 115 63</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATTCAGGAGGTGTCATATCAA</pcr_primer_p1>
		<pcr_primer_p2>GGGTAAAGTAGAATCCTGGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCC</canonical_amplicon>
		<polymorphic_amplicon>TTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTYAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29612</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>142052</contig_pos>
        <strand></strand>
        <context>GTYAGACTTG[T/A]AGACCMACAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTG</left_flank>
        <right_flank>AGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAATTTCAATATCTAGAAAACCAATCGAACAATCTAATACGACATACTACTGAAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTATTCATTCTCTCACTGTCGATTAATTTTTACCTTATTAAATGAGATTCTTTAACACCCAAGAACAAAGTTCAACTTCTAGTTATGTTATTAATAGTCCAAAAGAAAACAATCAGATAAAATTAATAGAAAATGCAAACCCTCAAAAAGAATTTCCAAGCACAAAAAACGAGGAAACGGCTATTT</canonical>
            <polymorphic>AGAATTTCAATATCTAGAAAACCAATCGAACAATCTAATACGACATACTACTGAAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGWAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTATTCATTCTCTCACTGTCGATTAATTTTTACCTTATTAAATGAGATTCTTTAACACCCAAGAACAAAGTTCAACTTCTAGTTATGTTATTAATAGTCCAAAAGAAAACAATCAGATAAAATTAATAGAAAATGCAAACCCTCAAAAAGAATTTCCAAGCACAAAAAACGAGGAAACGGCTATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 313 186</canonical_bands>
                <polymorphic_bands>687 313</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATTCAGGAGGTGTCATATCAA</pcr_primer_p1>
		<pcr_primer_p2>GGGTAAAGTAGAATCCTGGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCC</canonical_amplicon>
		<polymorphic_amplicon>TTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGWAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29613</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>142058</contig_pos>
        <strand></strand>
        <context>CTTGWAGACC[C/A]ACATTTGAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACC</left_flank>
        <right_flank>ACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAATATCTAGAAAACCAATCGAACAATCTAATACGACATACTACTGAAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTATTCATTCTCTCACTGTCGATTAATTTTTACCTTATTAAATGAGATTCTTTAACACCCAAGAACAAAGTTCAACTTCTAGTTATGTTATTAATAGTCCAAAAGAAAACAATCAGATAAAATTAATAGAAAATGCAAACCCTCAAAAAGAATTTCCAAGCACAAAAAACGAGGAAACGGCTATTTCTAAGG</canonical>
            <polymorphic>TCAATATCTAGAAAACCAATCGAACAATCTAATACGACATACTACTGAAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCMACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTATTCATTCTCTCACTGTCGATTAATTTTTACCTTATTAAATGAGATTCTTTAACACCCAAGAACAAAGTTCAACTTCTAGTTATGTTATTAATAGTCCAAAAGAAAACAATCAGATAAAATTAATAGAAAATGCAAACCCTCAAAAAGAATTTCCAAGCACAAAAAACGAGGAAACGGCTATTTCTAAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>219 134 121 105 103 76 57 42 39 30 24 23 9 9 5 2 2</canonical_bands>
                <polymorphic_bands>219 158 121 105 103 76 57 42 39 30 23 9 9 5 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATTCAGGAGGTGTCATATCAA</pcr_primer_p1>
		<pcr_primer_p2>GGGTAAAGTAGAATCCTGGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCC</canonical_amplicon>
		<polymorphic_amplicon>TTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCMACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29614</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>142094</contig_pos>
        <strand></strand>
        <context>AAATGCGAGA[T/A]AAWWCTGATG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGA</left_flank>
        <right_flank>AATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATACTACTGAAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTATTCATTCTCTCACTGTCGATTAATTTTTACCTTATTAAATGAGATTCTTTAACACCCAAGAACAAAGTTCAACTTCTAGTTATGTTATTAATAGTCCAAAAGAAAACAATCAGATAAAATTAATAGAAAATGCAAACCCTCAAAAAGAATTTCCAAGCACAAAAAACGAGGAAACGGCTATTTCTAAGGAGTCTTTTCCCTCTAGAAAACCAAAAACCACAAACA</canonical>
            <polymorphic>ACATACTACTGAAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGAWAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTATTCATTCTCTCACTGTCGATTAATTTTTACCTTATTAAATGAGATTCTTTAACACCCAAGAACAAAGTTCAACTTCTAGTTATGTTATTAATAGTCCAAAAGAAAACAATCAGATAAAATTAATAGAAAATGCAAACCCTCAAAAAGAATTTCCAAGCACAAAAAACGAGGAAACGGCTATTTCTAAGGAGTCTTTTCCCTCTAGAAAACCAAAAACCACAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTCAGGAGGTGTCATATCAA</pcr_primer_p1>
		<pcr_primer_p2>GGGTAAAGTAGAATCCTGGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCC</canonical_amplicon>
		<polymorphic_amplicon>TTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGAWAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29615</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>142097</contig_pos>
        <strand></strand>
        <context>TGCGAGAWAA[T/A]WCTGATGYCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAA</left_flank>
        <right_flank>ACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTAC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTACTGAAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTATTCATTCTCTCACTGTCGATTAATTTTTACCTTATTAAATGAGATTCTTTAACACCCAAGAACAAAGTTCAACTTCTAGTTATGTTATTAATAGTCCAAAAGAAAACAATCAGATAAAATTAATAGAAAATGCAAACCCTCAAAAAGAATTTCCAAGCACAAAAAACGAGGAAACGGCTATTTCTAAGGAGTCTTTTCCCTCTAGAAAACCAAAAACCACAAACAAAT</canonical>
            <polymorphic>TACTACTGAAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAAWACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTATTCATTCTCTCACTGTCGATTAATTTTTACCTTATTAAATGAGATTCTTTAACACCCAAGAACAAAGTTCAACTTCTAGTTATGTTATTAATAGTCCAAAAGAAAACAATCAGATAAAATTAATAGAAAATGCAAACCCTCAAAAAGAATTTCCAAGCACAAAAAACGAGGAAACGGCTATTTCTAAGGAGTCTTTTCCCTCTAGAAAACCAAAAACCACAAACAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGTGTCATATCAAGCAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTCATGGGGTAAAGTAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAAT</canonical_amplicon>
		<polymorphic_amplicon>GAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAAWACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29616</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>142098</contig_pos>
        <strand></strand>
        <context>GCGAGAWAAW[A/T]CTGATGYCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAAT</left_flank>
        <right_flank>CTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTACTGAAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTATTCATTCTCTCACTGTCGATTAATTTTTACCTTATTAAATGAGATTCTTTAACACCCAAGAACAAAGTTCAACTTCTAGTTATGTTATTAATAGTCCAAAAGAAAACAATCAGATAAAATTAATAGAAAATGCAAACCCTCAAAAAGAATTTCCAAGCACAAAAAACGAGGAAACGGCTATTTCTAAGGAGTCTTTTCCCTCTAGAAAACCAAAAACCACAAACAAATC</canonical>
            <polymorphic>ACTACTGAAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATWCTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTATTCATTCTCTCACTGTCGATTAATTTTTACCTTATTAAATGAGATTCTTTAACACCCAAGAACAAAGTTCAACTTCTAGTTATGTTATTAATAGTCCAAAAGAAAACAATCAGATAAAATTAATAGAAAATGCAAACCCTCAAAAAGAATTTCCAAGCACAAAAAACGAGGAAACGGCTATTTCTAAGGAGTCTTTTCCCTCTAGAAAACCAAAAACCACAAACAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGTGTCATATCAAGCAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTCATGGGGTAAAGTAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAAT</canonical_amplicon>
		<polymorphic_amplicon>GAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATWCTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29617</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>142105</contig_pos>
        <strand></strand>
        <context>AAWWCTGATG[C/T]CTCTATTTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATG</left_flank>
        <right_flank>CTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTATTCATTCTCTCACTGTCGATTAATTTTTACCTTATTAAATGAGATTCTTTAACACCCAAGAACAAAGTTCAACTTCTAGTTATGTTATTAATAGTCCAAAAGAAAACAATCAGATAAAATTAATAGAAAATGCAAACCCTCAAAAAGAATTTCCAAGCACAAAAAACGAGGAAACGGCTATTTCTAAGGAGTCTTTTCCCTCTAGAAAACCAAAAACCACAAACAAATCGAAGATA</canonical>
            <polymorphic>AAGTTATGTGTGATATCTTCAATGAACAGAATGAAGTTCTTGAAAGCCTTATCAGAGAAAATCCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGYCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTATTCATTCTCTCACTGTCGATTAATTTTTACCTTATTAAATGAGATTCTTTAACACCCAAGAACAAAGTTCAACTTCTAGTTATGTTATTAATAGTCCAAAAGAAAACAATCAGATAAAATTAATAGAAAATGCAAACCCTCAAAAAGAATTTCCAAGCACAAAAAACGAGGAAACGGCTATTTCTAAGGAGTCTTTTCCCTCTAGAAAACCAAAAACCACAAACAAATCGAAGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGTGTCATATCAAGCAAAC</pcr_primer_p1>
		<pcr_primer_p2>AATATTTCATGGGGTAAAGTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATT</canonical_amplicon>
		<polymorphic_amplicon>GAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGYCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29618</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>142167</contig_pos>
        <strand></strand>
        <context>TATTAGATGA[C/T]GTAGAAGGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGA</left_flank>
        <right_flank>GTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTATTCATTCTCTCACTGTCGATTAATTTTTACCTTATTAAATGAGATTCTTTAACACCCAAGAACAAAGTTCAACTTCTAGTTATGTTATTAATAGTCCAAAAGAAAACAATCAGATAAAATTAATAGAAAATGCAAACCCTCAAAAAGAATTTCCAAGCACAAAAAACGAGGAAACGGCTATTTCTAAGGAGTCTTTTCCCTCTAGAAAACCAAAAACCACAAACAAATCGAAGATATCTAAAGATAACAATAATTTTCTGAAGGCCCTTAAAAGTGGATCTGGTTTTAAGAGAATCTA</canonical>
            <polymorphic>CCAAGAAGATATATCCAGAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGAYGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTATTCATTCTCTCACTGTCGATTAATTTTTACCTTATTAAATGAGATTCTTTAACACCCAAGAACAAAGTTCAACTTCTAGTTATGTTATTAATAGTCCAAAAGAAAACAATCAGATAAAATTAATAGAAAATGCAAACCCTCAAAAAGAATTTCCAAGCACAAAAAACGAGGAAACGGCTATTTCTAAGGAGTCTTTTCCCTCTAGAAAACCAAAAACCACAAACAAATCGAAGATATCTAAAGATAACAATAATTTTCTGAAGGCCCTTAAAAGTGGATCTGGTTTTAAGAGAATCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>371 308 193 128</canonical_bands>
                <polymorphic_bands>564 308 128</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATTTGAGGAAGATCTCCTAGT</pcr_primer_p1>
		<pcr_primer_p2>TCTCCTATCAATGAAAGTTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGA</canonical_amplicon>
		<polymorphic_amplicon>ACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGAYGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29619</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>142184</contig_pos>
        <strand></strand>
        <context>GGTTTCTTTG[A/G]AAAATGGTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTG</left_flank>
        <right_flank>AAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTATTCATTCTCTCACTGTCGATTAATTTTTACCTTATTAAATGAGATTCTTTAACACCCAAGAACAAAGTTCAACTTCTAGTTATGTTATTAATAGTCCAAAAGAAAACAATCAGATAAAATTAATAGAAAATGCAAACCCTCAAAAAGAATTTCCAAGCACAAAAAACGAGGAAACGGCTATTTCTAAGGAGTCTTTTCCCTCTAGAAAACCAAAAACCACAAACAAATCGAAGATATCTAAAGATAACAATAATTTTCTGAAGGCCCTTAAAAGTGGATCTGGTTTTAAGAGAATCTAAATAATGTGTAGCTCCA</canonical>
            <polymorphic>GAAACAGTTGAACCATACAGCTATCAAAGTTAAACTCATCGATTCTCAAGAACCAGTTGTTCAAGTTACTTTCTGCAAAGAAATTGATGAAGAAGAGATAGACTTTATAGACGTTACTCATTTCGATGGGCATAAATTAAGTCTTGCTCTCACACTCGGACAAATCCCAATTAAGATTAAAAGCCTTGGAGATAAAGTTTGGTATTATAAGAATGATTATTCAGGAGGTGTCATATCAAGCAAACCGCAGCTTCATCCCATGATTGATTTTAGAACTAACATTACTAATATGAGAAACTTCAAAGAGTTTGATTTGAAATTCCTAGATGATAAAGTAGTTTTTCATGAACACATCTTGTCAGACTTGTAGACCCACATTTGAGGAAGATCTCCTAGTAGAAATGCGAGATAATACTGATGCCTCTATTTAAAGTTTATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGRAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTATTCATTCTCTCACTGTCGATTAATTTTTACCTTATTAAATGAGATTCTTTAACACCCAAGAACAAAGTTCAACTTCTAGTTATGTTATTAATAGTCCAAAAGAAAACAATCAGATAAAATTAATAGAAAATGCAAACCCTCAAAAAGAATTTCCAAGCACAAAAAACGAGGAAACGGCTATTTCTAAGGAGTCTTTTCCCTCTAGAAAACCAAAAACCACAAACAAATCGAAGATATCTAAAGATAACAATAATTTTCTGAAGGCCCTTAAAAGTGGATCTGGTTTTAAGAGAATCTAAATAATGTGTAGCTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGCTGATAACCAGGATTCTAC</pcr_primer_p1>
		<pcr_primer_p2>TAGATGGACGTTGTATCATTTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGAAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTA</canonical_amplicon>
		<polymorphic_amplicon>TATGCTGATAACCAGGATTCTACTTTACCCCATGAAATATTAGATGACGTAGAAGGTTTCTTTGRAAAATGGTGGCTTAGAATTTGGAGAGTTGGTGTAACACTTGGCGTGGCTGTAGTGTACTTATTCGTAGGAAGATCAATTTGGATGATACTTTCACCAAAAACTTTCATTGATAGGAGAAATAATAGAAGAAGAAGGAGAGAATATGAAGCCGTAGAATTAAGACAAATGATACAACGTCCATCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29620</snp_id>
        <super_contig>c004701117.Contig1</super_contig>
        <contig_pos>143412</contig_pos>
        <strand>+</strand>
        <context>TTCCAGATCC[A/C]AGCTCTATAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGGAAATATCTATACACATTTCTGAAAACTGTGATGACATTCCAGATCC</left_flank>
        <right_flank>AGCTCTATAGATCCAAATAGAAAAACGTTGATAATATTCGACGATTTAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCTAATGTTCCTTCAACTTTTACTATGGCAATAGAGTTTACCTTGAAGTCATGTGGAAAATCAAATTGAAACGCTTTTTCGCTGGATTTTAGGTTTAAGAATAAGTGAACCATTTATTAAGTACTAAATTATGAAATCTGATTTCACTGATTATTCGATTCAAAACTATTATTCTAAAAGGAACAACAATCCTCTTCTTCCTAGTTCTTTAAGAGCTTGTATAATAGGAAAGTCTGGATGTGGCAAAACTAATCTTTTAATGAACTTATTATTAGATGAAACTGTGGAGAAGATTATTTAGATTATGATAACTTGTACATATTCTCTACCACTCTTTTCCAGCCATGCTATCAAGCACTTATCAACGGTTTTGCGAATGGTTTGAGTAAAAAAGAAATCAGAGAATGTTTTCGAACGCAAAATTTTATGGTTGACAAAAAAGAAAATAAGGAAATATCTATACACATTTCTGAAAACTGTGATGACATTCCAGATCCCAGCTCTATAGATCCAAATAGAAAAACGTTGATAATATTCGACGATTTAATGCTCGAAAAACAGAATAAAATAGAACAGTATTACACTCGAGGTAGACATAGCAACATTGATTGCTTTTACATTTCACACAATTATATAAAACTACCGAAAAATACTATTAGGTAGAACGCCAACTTTTTCATCGTTTTTTCTCAGGATAAAATGAATTTAGAATATATCTATCGGGATCACTGTGGTGAAGTGGATAAACCCACATTTTTAGAGATGGTTACAGAAATTTGGAAAGAAAAACATAACTTTTTTACTATTGATAAGACTAGCGACTCGGACAACGGAAAGTTTAGAAAGATGTTGAAGTACTTCTTTGTCCTCTGAACACATTTTAGACATGTTTTTCCTGGCGAACATATAAAAATCCGTTTNNNNNNNNNNTAAAACGGAAAACGAAACGGAATACGGAAAACGGAAAACGGATTTTTATATGTTCGCCAGGAAAAACA</canonical>
            <polymorphic>AATCTAATGTTCCTTCAACTTTTACTATGGCAATAGAGTTTACCTTGAAGTCATGTGGAAAATCAAATTGAAACGCTTTTTCGCTGGATTTTAGGTTTAAGAATAAGTGAACCATTTATTAAGTACTAAATTATGAAATCTGATTTCACTGATTATTCGATTCAAAACTATTATTCTAAAAGGAACAACAATCCTCTTCTTCCTAGTTCTTTAAGAGCTTGTATAATAGGAAAGTCTGGATGTGGCAAAACTAATCTTTTAATGAACTTATTATTAGATGAAACTGTGGAGAAGATTATTTAGATTATGATAACTTGTACATATTCTCTACCACTCTTTTCCAGCCATGCTATCAAGCACTTATCAACGGTTTTGCGAATGGTTTGAGTAAAAAAGAAATCAGAGAATGTTTTCGAACGCAAAATTTTATGGTTGACAAAAAAGAAAATAAGGAAATATCTATACACATTTCTGAAAACTGTGATGACATTCCAGATCCMAGCTCTATAGATCCAAATAGAAAAACGTTGATAATATTCGACGATTTAATGCTCGAAAAACAGAATAAAATAGAACAGTATTACACTCGAGGTAGACATAGCAACATTGATTGCTTTTACATTTCACACAATTATATAAAACTACCGAAAAATACTATTAGGTAGAACGCCAACTTTTTCATCGTTTTTTCTCAGGATAAAATGAATTTAGAATATATCTATCGGGATCACTGTGGTGAAGTGGATAAACCCACATTTTTAGAGATGGTTACAGAAATTTGGAAAGAAAAACATAACTTTTTTACTATTGATAAGACTAGCGACTCGGACAACGGAAAGTTTAGAAAGATGTTGAAGTACTTCTTTGTCCTCTGAACACATTTTAGACATGTTTTTCCTGGCGAACATATAAAAATCCGTTTNNNNNNNNNNTAAAACGGAAAACGAAACGGAATACGGAAAACGGAAAACGGATTTTTATATGTTCGCCAGGAAAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGCTATCAAGCACTTATCAA</pcr_primer_p1>
		<pcr_primer_p2>TCTACCTCGAGTGTAATACTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CATGCTATCAAGCACTTATCAACGGTTTTGCGAATGGTTTGAGTAAAAAAGAAATCAGAGAATGTTTTCGAACGCAAAATTTTATGGTTGACAAAAAAGAAAATAAGGAAATATCTATACACATTTCTGAAAACTGTGATGACATTCCAGATCCCAGCTCTATAGATCCAAATAGAAAAACGTTGATAATATTCGACGATTTAATGCTCGAAAAACAGAATAAAATAGAACAGTATTACACTCGAGGTAGA</canonical_amplicon>
		<polymorphic_amplicon>CATGCTATCAAGCACTTATCAACGGTTTTGCGAATGGTTTGAGTAAAAAAGAAATCAGAGAATGTTTTCGAACGCAAAATTTTATGGTTGACAAAAAAGAAAATAAGGAAATATCTATACACATTTCTGAAAACTGTGATGACATTCCAGATCCMAGCTCTATAGATCCAAATAGAAAAACGTTGATAATATTCGACGATTTAATGCTCGAAAAACAGAATAAAATAGAACAGTATTACACTCGAGGTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29621</snp_id>
        <super_contig>c004800432.Contig2</super_contig>
        <contig_pos>10665</contig_pos>
        <strand></strand>
        <context>AATTTTTTTT[A/T]AACTACAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAACCAAAAATATTTAAAGTTTTTAAAAATTATGCTGAAAATTTTTTTT</left_flank>
        <right_flank>AACTACAATAACAATAGAATTCAAAAAAAATGACTATGAATTAGCACATC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCATGAATTGCTCAACAATGGCTTGTATGAGTGCAAATAATACAGTAATCCAAAGAGGTTTTGGTTGAAAAAACAAAAATAAAATTTTTCAGGTCATGGGAGCTTACGCACGTCATCTGTTCGACGTCGTCTATTTATATGGCGTTGCACTGACGCATACGAATTCCACGGATCCTGAAGTCTACTCTAATGTTGATGTGATAGTCCCCCAGTTTATAACTTCGTTTCAAGGTAAGGAAAATAATAAGAATGCAAAAAGAAACAAGCTTCTAGCTCTTCTAGGAGCCGAGATATGCGCGTTTGAAGTTTTGAAGAGACGCAGACAATTAGATTGTCTCGTTGTCTGCGTCTCTCGCCTCCCAAACTTTGAGTGGCTGAATATCGGGTTCCAGGCGTCCTAGAGACTTGATTGTTACACCAAAATGAAGCGGAAAATGTGAGAAATCTGTAAAACCAAAAATATTTAAAGTTTTTAAAAATTATGCTGAAAATTTTTTTTAAACTACAATAACAATAGAATTCAAAAAAAATGACTATGAATTAGCACATCATTATCTCTCATTGGCAAGTTAAAACAAGCTTCTAGCTCTTTTAGGAGCCGAGATATAACGCTTTGAACTTTTGGAGAATAGAGACGCAGACAACAAGATACTCTAACTGCCTGCGTTTCTTCTAAACCTTGAATGGCCGTATCTCGGCTTTCAGGCGTCCTAGAGACTCGATTTTTCCTCCATTCTAAAGACAATGACTTCTGTATTATGCTAAATTTAATTTTCAGGAAATATCATAAAAACTCTAATTCTTTCACAGAATTAAATTATTTAGATTTTTTTTCTGATTCTCTTTTTTCTAATTTGTCATCTTTTCAGATTTTTTTTTCGTCCACAAACCAAGGTTCTAGCACGTCTAGCAGCCGAGATAAAGCCAATTGAAGTTTTGAAGAGACGCAGACAGTTTGAGTGTCTTGTCGTCTGCGTCTCCACCCGTTGAACTTCAAATT</canonical>
            <polymorphic>CCATGAATTGCTCAACAATGGCTTGTATGAGTGCAAATAATACAGTAATCCAAAGAGGTTTTGGTTGAAAAAACAAAAATAAAATTTTTCAGGTCATGGGAGCTTACGCACGTCATCTGTTCGACGTCGTCTATTTATATGGCGTTGCACTGACGCATACGAATTCCACGGATCCTGAAGTCTACTCTAATGTTGATGTGATAGTCCCCCAGTTTATAACTTCGTTTCAAGGTAAGGAAAATAATAAGAATGCAAAAAGAAACAAGCTTCTAGCTCTTCTAGGAGCCGAGATATGCGCGTTTGAAGTTTTGAAGAGACGCAGACAATTAGATTGTCTCGTTGTCTGCGTCTCTCGCCTCCCAAACTTTGAGTGGCTGAATATCGGGTTCCAGGCGTCCTAGAGACTTGATTGTTACACCAAAATGAAGCGGAAAATGTGAGAAATCTGTAAAACCAAAAATATTTAAAGTTTTTAAAAATTATGCTGAAAATTTTTTTTWAACTACAATAACAATAGAATTCAAAAAAAATGACTATGAATTAGCACATCATTATCTCTCATTGGCAAGTTAAAACAAGCTTCTAGCTCTTTTAGGAGCCGAGATATAACGCTTTGAACTTTTGGAGAATAGAGACGCAGACAACAAGATACTCTAACTGCCTGCGTTTCTTCTAAACCTTGAATGGCCGTATCTCGGCTTTCAGGCGTCCTAGAGACTCGATTTTTCCTCCATTCTAAAGACAATGACTTCTGTATTATGCTAAATTTAATTTTCAGGAAATATCATAAAAACTCTAATTCTTTCACAGAATTAAATTATTTAGATTTTTTTTCTGATTCTCTTTTTTCTAATTTGTCATCTTTTCAGATTTTTTTTTCGTCCACAAACCAAGGTTCTAGCACGTCTAGCAGCCGAGATAAAGCCAATTGAAGTTTTGAAGAGACGCAGACAGTTTGAGTGTCTTGTCGTCTGCGTCTCCACCCGTTGAACTTCAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 465 25 9</canonical_bands>
                <polymorphic_bands>526 465 9</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>464 198 187 72 45 25 9</canonical_bands>
                <polymorphic_bands>464 198 187 97 45 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAAATGTGAGAAATCTGTAAA</pcr_primer_p1>
		<pcr_primer_p2>AACTTGCCAATGAGAGATAATG</pcr_primer_p2>
		<pcr_amplicon_size>142</pcr_amplicon_size>
		<canonical_amplicon>GGAAAATGTGAGAAATCTGTAAAACCAAAAATATTTAAAGTTTTTAAAAATTATGCTGAAAATTTTTTTTAAACTACAATAACAATAGAATTCAAAAAAAATGACTATGAATTAGCACATCATTATCTCTCATTGGCAAGTT</canonical_amplicon>
		<polymorphic_amplicon>GGAAAATGTGAGAAATCTGTAAAACCAAAAATATTTAAAGTTTTTAAAAATTATGCTGAAAATTTTTTTTWAACTACAATAACAATAGAATTCAAAAAAAATGACTATGAATTAGCACATCATTATCTCTCATTGGCAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29622</snp_id>
        <super_contig>c004800432.Contig2</super_contig>
        <contig_pos>10688</contig_pos>
        <strand>+</strand>
        <context>AATAGAATTC[A/T]AAAAAAATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAAAAATTATGCTGAAAATTTTTTTTAAACTACAATAACAATAGAATTC</left_flank>
        <right_flank>AAAAAAATGACTATGAATTAGCACATCATTATCTCTCATTGGCAAGTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTATGAGTGCAAATAATACAGTAATCCAAAGAGGTTTTGGTTGAAAAAACAAAAATAAAATTTTTCAGGTCATGGGAGCTTACGCACGTCATCTGTTCGACGTCGTCTATTTATATGGCGTTGCACTGACGCATACGAATTCCACGGATCCTGAAGTCTACTCTAATGTTGATGTGATAGTCCCCCAGTTTATAACTTCGTTTCAAGGTAAGGAAAATAATAAGAATGCAAAAAGAAACAAGCTTCTAGCTCTTCTAGGAGCCGAGATATGCGCGTTTGAAGTTTTGAAGAGACGCAGACAATTAGATTGTCTCGTTGTCTGCGTCTCTCGCCTCCCAAACTTTGAGTGGCTGAATATCGGGTTCCAGGCGTCCTAGAGACTTGATTGTTACACCAAAATGAAGCGGAAAATGTGAGAAATCTGTAAAACCAAAAATATTTAAAGTTTTTAAAAATTATGCTGAAAATTTTTTTTAAACTACAATAACAATAGAATTCAAAAAAAATGACTATGAATTAGCACATCATTATCTCTCATTGGCAAGTTAAAACAAGCTTCTAGCTCTTTTAGGAGCCGAGATATAACGCTTTGAACTTTTGGAGAATAGAGACGCAGACAACAAGATACTCTAACTGCCTGCGTTTCTTCTAAACCTTGAATGGCCGTATCTCGGCTTTCAGGCGTCCTAGAGACTCGATTTTTCCTCCATTCTAAAGACAATGACTTCTGTATTATGCTAAATTTAATTTTCAGGAAATATCATAAAAACTCTAATTCTTTCACAGAATTAAATTATTTAGATTTTTTTTCTGATTCTCTTTTTTCTAATTTGTCATCTTTTCAGATTTTTTTTTCGTCCACAAACCAAGGTTCTAGCACGTCTAGCAGCCGAGATAAAGCCAATTGAAGTTTTGAAGAGACGCAGACAGTTTGAGTGTCTTGTCGTCTGCGTCTCCACCCGTTGAACTTCAAATTACTGTATCTCGGCTTCTAGAAGA</canonical>
            <polymorphic>TGTATGAGTGCAAATAATACAGTAATCCAAAGAGGTTTTGGTTGAAAAAACAAAAATAAAATTTTTCAGGTCATGGGAGCTTACGCACGTCATCTGTTCGACGTCGTCTATTTATATGGCGTTGCACTGACGCATACGAATTCCACGGATCCTGAAGTCTACTCTAATGTTGATGTGATAGTCCCCCAGTTTATAACTTCGTTTCAAGGTAAGGAAAATAATAAGAATGCAAAAAGAAACAAGCTTCTAGCTCTTCTAGGAGCCGAGATATGCGCGTTTGAAGTTTTGAAGAGACGCAGACAATTAGATTGTCTCGTTGTCTGCGTCTCTCGCCTCCCAAACTTTGAGTGGCTGAATATCGGGTTCCAGGCGTCCTAGAGACTTGATTGTTACACCAAAATGAAGCGGAAAATGTGAGAAATCTGTAAAACCAAAAATATTTAAAGTTTTTAAAAATTATGCTGAAAATTTTTTTTAAACTACAATAACAATAGAATTCWAAAAAAATGACTATGAATTAGCACATCATTATCTCTCATTGGCAAGTTAAAACAAGCTTCTAGCTCTTTTAGGAGCCGAGATATAACGCTTTGAACTTTTGGAGAATAGAGACGCAGACAACAAGATACTCTAACTGCCTGCGTTTCTTCTAAACCTTGAATGGCCGTATCTCGGCTTTCAGGCGTCCTAGAGACTCGATTTTTCCTCCATTCTAAAGACAATGACTTCTGTATTATGCTAAATTTAATTTTCAGGAAATATCATAAAAACTCTAATTCTTTCACAGAATTAAATTATTTAGATTTTTTTTCTGATTCTCTTTTTTCTAATTTGTCATCTTTTCAGATTTTTTTTTCGTCCACAAACCAAGGTTCTAGCACGTCTAGCAGCCGAGATAAAGCCAATTGAAGTTTTGAAGAGACGCAGACAGTTTGAGTGTCTTGTCGTCTGCGTCTCCACCCGTTGAACTTCAAATTACTGTATCTCGGCTTCTAGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAATGTGAGAAATCTGTAAA</pcr_primer_p1>
		<pcr_primer_p2>TTAGCATAATACAGAAGTCATTGTC</pcr_primer_p2>
		<pcr_amplicon_size>336</pcr_amplicon_size>
		<canonical_amplicon>GGAAAATGTGAGAAATCTGTAAAACCAAAAATATTTAAAGTTTTTAAAAATTATGCTGAAAATTTTTTTTAAACTACAATAACAATAGAATTCAAAAAAAATGACTATGAATTAGCACATCATTATCTCTCATTGGCAAGTTAAAACAAGCTTCTAGCTCTTTTAGGAGCCGAGATATAACGCTTTGAACTTTTGGAGAATAGAGACGCAGACAACAAGATACTCTAACTGCCTGCGTTTCTTCTAAACCTTGAATGGCCGTATCTCGGCTTTCAGGCGTCCTAGAGACTCGATTTTTCCTCCATTCTAAAGACAATGACTTCTGTATTATGCTAA</canonical_amplicon>
		<polymorphic_amplicon>GGAAAATGTGAGAAATCTGTAAAACCAAAAATATTTAAAGTTTTTAAAAATTATGCTGAAAATTTTTTTTAAACTACAATAACAATAGAATTCWAAAAAAATGACTATGAATTAGCACATCATTATCTCTCATTGGCAAGTTAAAACAAGCTTCTAGCTCTTTTAGGAGCCGAGATATAACGCTTTGAACTTTTGGAGAATAGAGACGCAGACAACAAGATACTCTAACTGCCTGCGTTTCTTCTAAACCTTGAATGGCCGTATCTCGGCTTTCAGGCGTCCTAGAGACTCGATTTTTCCTCCATTCTAAAGACAATGACTTCTGTATTATGCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29623</snp_id>
        <super_contig>c004800432.Contig2</super_contig>
        <contig_pos>10964</contig_pos>
        <strand>+</strand>
        <context>AAAAACTCTA[C/T]TTCTTTCACA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTCTGTATTATGCTAAATTTAATTTTCAGGAAATATCATAAAAACTCTA</left_flank>
        <right_flank>TTCTTTCACAGAATTAAATTATTTAGATTTTTTTTCTGATTCTCTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAAGTTTTGAAGAGACGCAGACAATTAGATTGTCTCGTTGTCTGCGTCTCTCGCCTCCCAAACTTTGAGTGGCTGAATATCGGGTTCCAGGCGTCCTAGAGACTTGATTGTTACACCAAAATGAAGCGGAAAATGTGAGAAATCTGTAAAACCAAAAATATTTAAAGTTTTTAAAAATTATGCTGAAAATTTTTTTTAAACTACAATAACAATAGAATTCAAAAAAAATGACTATGAATTAGCACATCATTATCTCTCATTGGCAAGTTAAAACAAGCTTCTAGCTCTTTTAGGAGCCGAGATATAACGCTTTGAACTTTTGGAGAATAGAGACGCAGACAACAAGATACTCTAACTGCCTGCGTTTCTTCTAAACCTTGAATGGCCGTATCTCGGCTTTCAGGCGTCCTAGAGACTCGATTTTTCCTCCATTCTAAAGACAATGACTTCTGTATTATGCTAAATTTAATTTTCAGGAAATATCATAAAAACTCTAATTCTTTCACAGAATTAAATTATTTAGATTTTTTTTCTGATTCTCTTTTTTCTAATTTGTCATCTTTTCAGATTTTTTTTTCGTCCACAAACCAAGGTTCTAGCACGTCTAGCAGCCGAGATAAAGCCAATTGAAGTTTTGAAGAGACGCAGACAGTTTGAGTGTCTTGTCGTCTGCGTCTCCACCCGTTGAACTTCAAATTACTGTATCTCGGCTTCTAGAAGAGCTAGAGATGTGATTCTTTTATTTATATTCTTTTCTAATTTACAGGAATGACAGGAGAAGTTAAAATATCAACAAATCTAACAAGAATGTCAATTTTTCAATTATACGGATTGAATGAACATTATGATCAAGTGGCTTATATCAATTTTACATTTCTCAATGAGAAAATGGTAATTGGGATCAAAATTTTCAAACAAAAAAAAAGTTAGAATCCTTTTCCAGAACGTCTCCTTGTTCTACAAAGACGAGGGTCCCACCGTATGGCACTTCTACAGT</canonical>
            <polymorphic>TTTGAAGTTTTGAAGAGACGCAGACAATTAGATTGTCTCGTTGTCTGCGTCTCTCGCCTCCCAAACTTTGAGTGGCTGAATATCGGGTTCCAGGCGTCCTAGAGACTTGATTGTTACACCAAAATGAAGCGGAAAATGTGAGAAATCTGTAAAACCAAAAATATTTAAAGTTTTTAAAAATTATGCTGAAAATTTTTTTTAAACTACAATAACAATAGAATTCAAAAAAAATGACTATGAATTAGCACATCATTATCTCTCATTGGCAAGTTAAAACAAGCTTCTAGCTCTTTTAGGAGCCGAGATATAACGCTTTGAACTTTTGGAGAATAGAGACGCAGACAACAAGATACTCTAACTGCCTGCGTTTCTTCTAAACCTTGAATGGCCGTATCTCGGCTTTCAGGCGTCCTAGAGACTCGATTTTTCCTCCATTCTAAAGACAATGACTTCTGTATTATGCTAAATTTAATTTTCAGGAAATATCATAAAAACTCTAYTTCTTTCACAGAATTAAATTATTTAGATTTTTTTTCTGATTCTCTTTTTTCTAATTTGTCATCTTTTCAGATTTTTTTTTCGTCCACAAACCAAGGTTCTAGCACGTCTAGCAGCCGAGATAAAGCCAATTGAAGTTTTGAAGAGACGCAGACAGTTTGAGTGTCTTGTCGTCTGCGTCTCCACCCGTTGAACTTCAAATTACTGTATCTCGGCTTCTAGAAGAGCTAGAGATGTGATTCTTTTATTTATATTCTTTTCTAATTTACAGGAATGACAGGAGAAGTTAAAATATCAACAAATCTAACAAGAATGTCAATTTTTCAATTATACGGATTGAATGAACATTATGATCAAGTGGCTTATATCAATTTTACATTTCTCAATGAGAAAATGGTAATTGGGATCAAAATTTTCAAACAAAAAAAAAGTTAGAATCCTTTTCCAGAACGTCTCCTTGTTCTACAAAGACGAGGGTCCCACCGTATGGCACTTCTACAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>226 153 92 75 70 63 55 44 36 29 28 28 25 21 13 12 12 8 5 5</canonical_bands>
                <polymorphic_bands>226 153 92 75 70 63 55 44 41 36 29 28 25 21 12 12 8 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTCCATTCTAAAGACAATGAC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATCTGAAAAGATGACAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>148</pcr_amplicon_size>
		<canonical_amplicon>CCTCCATTCTAAAGACAATGACTTCTGTATTATGCTAAATTTAATTTTCAGGAAATATCATAAAAACTCTAATTCTTTCACAGAATTAAATTATTTAGATTTTTTTTCTGATTCTCTTTTTTCTAATTTGTCATCTTTTCAGATTTTT</canonical_amplicon>
		<polymorphic_amplicon>CCTCCATTCTAAAGACAATGACTTCTGTATTATGCTAAATTTAATTTTCAGGAAATATCATAAAAACTCTAYTTCTTTCACAGAATTAAATTATTTAGATTTTTTTTCTGATTCTCTTTTTTCTAATTTGTCATCTTTTCAGATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29624</snp_id>
        <super_contig>c004800432.Contig2</super_contig>
        <contig_pos>11015</contig_pos>
        <strand></strand>
        <context>TCTCTTTTTT[C/T]TAATTTGTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTTTCACAGAATTAAATTATTTAGATTTTTTTTCTGATTCTCTTTTTT</left_flank>
        <right_flank>TAATTTGTCATCTTTTCAGATTTTTTTTTCGTCCACAAACCAAGGTTCTA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCGCCTCCCAAACTTTGAGTGGCTGAATATCGGGTTCCAGGCGTCCTAGAGACTTGATTGTTACACCAAAATGAAGCGGAAAATGTGAGAAATCTGTAAAACCAAAAATATTTAAAGTTTTTAAAAATTATGCTGAAAATTTTTTTTAAACTACAATAACAATAGAATTCAAAAAAAATGACTATGAATTAGCACATCATTATCTCTCATTGGCAAGTTAAAACAAGCTTCTAGCTCTTTTAGGAGCCGAGATATAACGCTTTGAACTTTTGGAGAATAGAGACGCAGACAACAAGATACTCTAACTGCCTGCGTTTCTTCTAAACCTTGAATGGCCGTATCTCGGCTTTCAGGCGTCCTAGAGACTCGATTTTTCCTCCATTCTAAAGACAATGACTTCTGTATTATGCTAAATTTAATTTTCAGGAAATATCATAAAAACTCTAATTCTTTCACAGAATTAAATTATTTAGATTTTTTTTCTGATTCTCTTTTTTCTAATTTGTCATCTTTTCAGATTTTTTTTTCGTCCACAAACCAAGGTTCTAGCACGTCTAGCAGCCGAGATAAAGCCAATTGAAGTTTTGAAGAGACGCAGACAGTTTGAGTGTCTTGTCGTCTGCGTCTCCACCCGTTGAACTTCAAATTACTGTATCTCGGCTTCTAGAAGAGCTAGAGATGTGATTCTTTTATTTATATTCTTTTCTAATTTACAGGAATGACAGGAGAAGTTAAAATATCAACAAATCTAACAAGAATGTCAATTTTTCAATTATACGGATTGAATGAACATTATGATCAAGTGGCTTATATCAATTTTACATTTCTCAATGAGAAAATGGTAATTGGGATCAAAATTTTCAAACAAAAAAAAAGTTAGAATCCTTTTCCAGAACGTCTCCTTGTTCTACAAAGACGAGGGTCCCACCGTATGGCACTTCTACAGTAACCACAGGCCTTTGGATATTCCAATCTGTGGATTTCTTGGAAAATCCTGC</canonical>
            <polymorphic>TCTCGCCTCCCAAACTTTGAGTGGCTGAATATCGGGTTCCAGGCGTCCTAGAGACTTGATTGTTACACCAAAATGAAGCGGAAAATGTGAGAAATCTGTAAAACCAAAAATATTTAAAGTTTTTAAAAATTATGCTGAAAATTTTTTTTAAACTACAATAACAATAGAATTCAAAAAAAATGACTATGAATTAGCACATCATTATCTCTCATTGGCAAGTTAAAACAAGCTTCTAGCTCTTTTAGGAGCCGAGATATAACGCTTTGAACTTTTGGAGAATAGAGACGCAGACAACAAGATACTCTAACTGCCTGCGTTTCTTCTAAACCTTGAATGGCCGTATCTCGGCTTTCAGGCGTCCTAGAGACTCGATTTTTCCTCCATTCTAAAGACAATGACTTCTGTATTATGCTAAATTTAATTTTCAGGAAATATCATAAAAACTCTAATTCTTTCACAGAATTAAATTATTTAGATTTTTTTTCTGATTCTCTTTTTTYTAATTTGTCATCTTTTCAGATTTTTTTTTCGTCCACAAACCAAGGTTCTAGCACGTCTAGCAGCCGAGATAAAGCCAATTGAAGTTTTGAAGAGACGCAGACAGTTTGAGTGTCTTGTCGTCTGCGTCTCCACCCGTTGAACTTCAAATTACTGTATCTCGGCTTCTAGAAGAGCTAGAGATGTGATTCTTTTATTTATATTCTTTTCTAATTTACAGGAATGACAGGAGAAGTTAAAATATCAACAAATCTAACAAGAATGTCAATTTTTCAATTATACGGATTGAATGAACATTATGATCAAGTGGCTTATATCAATTTTACATTTCTCAATGAGAAAATGGTAATTGGGATCAAAATTTTCAAACAAAAAAAAAGTTAGAATCCTTTTCCAGAACGTCTCCTTGTTCTACAAAGACGAGGGTCCCACCGTATGGCACTTCTACAGTAACCACAGGCCTTTGGATATTCCAATCTGTGGATTTCTTGGAAAATCCTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGGAAATATCATAAAAACTCT</pcr_primer_p1>
		<pcr_primer_p2>CCTGTCATTCCTGTAAATTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>306</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGGAAATATCATAAAAACTCTAATTCTTTCACAGAATTAAATTATTTAGATTTTTTTTCTGATTCTCTTTTTTCTAATTTGTCATCTTTTCAGATTTTTTTTTCGTCCACAAACCAAGGTTCTAGCACGTCTAGCAGCCGAGATAAAGCCAATTGAAGTTTTGAAGAGACGCAGACAGTTTGAGTGTCTTGTCGTCTGCGTCTCCACCCGTTGAACTTCAAATTACTGTATCTCGGCTTCTAGAAGAGCTAGAGATGTGATTCTTTTATTTATATTCTTTTCTAATTTACAGGAATGACAGG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGGAAATATCATAAAAACTCTAATTCTTTCACAGAATTAAATTATTTAGATTTTTTTTCTGATTCTCTTTTTTYTAATTTGTCATCTTTTCAGATTTTTTTTTCGTCCACAAACCAAGGTTCTAGCACGTCTAGCAGCCGAGATAAAGCCAATTGAAGTTTTGAAGAGACGCAGACAGTTTGAGTGTCTTGTCGTCTGCGTCTCCACCCGTTGAACTTCAAATTACTGTATCTCGGCTTCTAGAAGAGCTAGAGATGTGATTCTTTTATTTATATTCTTTTCTAATTTACAGGAATGACAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29625</snp_id>
        <super_contig>c004800432.Contig2</super_contig>
        <contig_pos>12037</contig_pos>
        <strand></strand>
        <context>TCATGTTTTG[C/T]ATYATMAAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACATTCTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTG</left_flank>
        <right_flank>ATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCAACTTTTGATAATTGTGGCACTTGTCGTAATTATCCTAATGCTAATTACCCTAATCATCGGCTGCTGTTTTATCATGTCCAGTCGACGGGCTGAGCAATTAAGAATCAATTCGGAATGGCAAATCCCGTTTTTGAGTTTAATGGAACCGGAAAATCGCAAAAACGCACATCACACCAGCAAACGGTCCCTACAATCCGCCCAGACTGGGGAATCCAAAACTACGGCAGTTAGTGATTTTTGTGAGAATTACACAATTATGATCTACGAGAAGGATATGGTGTTAACGATGAAGTATCAATATATGAATTTAACAAAATCGGATATGGAGAAATTTGTGAAATTGAGAAAGTTGGAACATGAGAATCTCAACAAATTTATCGGATTATCGATTGACGGATCTCAATTCATCTCGGTCACTAAACTATGTTCCAGAGGATCCCTTCAAGACATTCTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAAAACTTTGAATCCATGCAACTTTTCAAGATTTGGGATTTTTTTTCAAAGTTTTTTTTCAAATGAAAACTACATATATGACCAGAAAACTTGTTCTAAATTGGGTGATTTACAAGAAAAACCAACTTTCTAGCTTTTCTATGAGCGGAGATACAGCGATTCAAAGTTTAGGAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAACCTCGGAAACTTCAAGTGGTCCTATCTTGGGTTCTAGAAGAGCTAGAAGGTTGA</canonical>
            <polymorphic>ACCAACTTTTGATAATTGTGGCACTTGTCGTAATTATCCTAATGCTAATTACCCTAATCATCGGCTGCTGTTTTATCATGTCCAGTCGACGGGCTGAGCAATTAAGAATCAATTCGGAATGGCAAATCCCGTTTTTGAGTTTAATGGAACCGGAAAATCGCAAAAACGCACATCACACCAGCAAACGGTCCCTACAATCCGCCCAGACTGGGGAATCCAAAACTACGGCAGTTAGTGATTTTTGTGAGAATTACACAATTATGATCTACGAGAAGGATATGGTGTTAACGATGAAGTATCAATATATGAATTTAACAAAATCGGATATGGAGAAATTTGTGAAATTGAGAAAGTTGGAACATGAGAATCTCAACAAATTTATCGGATTATCGATTGACGGATCTCAATTCATCTCGGTCACTAAACTATGTTCCAGAGGATCCCTTCAAGACATTCTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGYATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAAAACTTTGAATCCATGCAACTTTTCAAGATTTGGGATTTTTTTTCAAAGTTTTTTTTCAAATGAAAACTACATATATGACCAGAAAACTTGTTCTAAATTGGGTGATTTACAAGAAAAACCAACTTTCTAGCTTTTCTATGAGCGGAGATACAGCGATTCAAAGTTTAGGAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAACCTCGGAAACTTCAAGTGGTCCTATCTTGGGTTCTAGAAGAGCTAGAAGGTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>499 253 248</canonical_bands>
                <polymorphic_bands>752 248</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATTCTGTCTCGTGGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGACAACTGTGAAATAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>ACATTCTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACATTCTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGYATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29626</snp_id>
        <super_contig>c004800432.Contig2</super_contig>
        <contig_pos>12040</contig_pos>
        <strand></strand>
        <context>TGTTTTGYAT[T/C]ATMAAGGATR</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTCTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCAT</left_flank>
        <right_flank>ATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTTTTGATAATTGTGGCACTTGTCGTAATTATCCTAATGCTAATTACCCTAATCATCGGCTGCTGTTTTATCATGTCCAGTCGACGGGCTGAGCAATTAAGAATCAATTCGGAATGGCAAATCCCGTTTTTGAGTTTAATGGAACCGGAAAATCGCAAAAACGCACATCACACCAGCAAACGGTCCCTACAATCCGCCCAGACTGGGGAATCCAAAACTACGGCAGTTAGTGATTTTTGTGAGAATTACACAATTATGATCTACGAGAAGGATATGGTGTTAACGATGAAGTATCAATATATGAATTTAACAAAATCGGATATGGAGAAATTTGTGAAATTGAGAAAGTTGGAACATGAGAATCTCAACAAATTTATCGGATTATCGATTGACGGATCTCAATTCATCTCGGTCACTAAACTATGTTCCAGAGGATCCCTTCAAGACATTCTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAAAACTTTGAATCCATGCAACTTTTCAAGATTTGGGATTTTTTTTCAAAGTTTTTTTTCAAATGAAAACTACATATATGACCAGAAAACTTGTTCTAAATTGGGTGATTTACAAGAAAAACCAACTTTCTAGCTTTTCTATGAGCGGAGATACAGCGATTCAAAGTTTAGGAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAACCTCGGAAACTTCAAGTGGTCCTATCTTGGGTTCTAGAAGAGCTAGAAGGTTGATTT</canonical>
            <polymorphic>AACTTTTGATAATTGTGGCACTTGTCGTAATTATCCTAATGCTAATTACCCTAATCATCGGCTGCTGTTTTATCATGTCCAGTCGACGGGCTGAGCAATTAAGAATCAATTCGGAATGGCAAATCCCGTTTTTGAGTTTAATGGAACCGGAAAATCGCAAAAACGCACATCACACCAGCAAACGGTCCCTACAATCCGCCCAGACTGGGGAATCCAAAACTACGGCAGTTAGTGATTTTTGTGAGAATTACACAATTATGATCTACGAGAAGGATATGGTGTTAACGATGAAGTATCAATATATGAATTTAACAAAATCGGATATGGAGAAATTTGTGAAATTGAGAAAGTTGGAACATGAGAATCTCAACAAATTTATCGGATTATCGATTGACGGATCTCAATTCATCTCGGTCACTAAACTATGTTCCAGAGGATCCCTTCAAGACATTCTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATYATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAAAACTTTGAATCCATGCAACTTTTCAAGATTTGGGATTTTTTTTCAAAGTTTTTTTTCAAATGAAAACTACATATATGACCAGAAAACTTGTTCTAAATTGGGTGATTTACAAGAAAAACCAACTTTCTAGCTTTTCTATGAGCGGAGATACAGCGATTCAAAGTTTAGGAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAACCTCGGAAACTTCAAGTGGTCCTATCTTGGGTTCTAGAAGAGCTAGAAGGTTGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCTGTCTCGTGGAAACT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGACAACTGTGAAATAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>286</pcr_amplicon_size>
		<canonical_amplicon>CATTCTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>CATTCTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATYATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29627</snp_id>
        <super_contig>c004800432.Contig2</super_contig>
        <contig_pos>12043</contig_pos>
        <strand></strand>
        <context>TTTGYATYAT[C/A]AAGGATRTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTAT</left_flank>
        <right_flank>AAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGATAATTGTGGCACTTGTCGTAATTATCCTAATGCTAATTACCCTAATCATCGGCTGCTGTTTTATCATGTCCAGTCGACGGGCTGAGCAATTAAGAATCAATTCGGAATGGCAAATCCCGTTTTTGAGTTTAATGGAACCGGAAAATCGCAAAAACGCACATCACACCAGCAAACGGTCCCTACAATCCGCCCAGACTGGGGAATCCAAAACTACGGCAGTTAGTGATTTTTGTGAGAATTACACAATTATGATCTACGAGAAGGATATGGTGTTAACGATGAAGTATCAATATATGAATTTAACAAAATCGGATATGGAGAAATTTGTGAAATTGAGAAAGTTGGAACATGAGAATCTCAACAAATTTATCGGATTATCGATTGACGGATCTCAATTCATCTCGGTCACTAAACTATGTTCCAGAGGATCCCTTCAAGACATTCTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAAAACTTTGAATCCATGCAACTTTTCAAGATTTGGGATTTTTTTTCAAAGTTTTTTTTCAAATGAAAACTACATATATGACCAGAAAACTTGTTCTAAATTGGGTGATTTACAAGAAAAACCAACTTTCTAGCTTTTCTATGAGCGGAGATACAGCGATTCAAAGTTTAGGAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAACCTCGGAAACTTCAAGTGGTCCTATCTTGGGTTCTAGAAGAGCTAGAAGGTTGATTTTTG</canonical>
            <polymorphic>TTTTGATAATTGTGGCACTTGTCGTAATTATCCTAATGCTAATTACCCTAATCATCGGCTGCTGTTTTATCATGTCCAGTCGACGGGCTGAGCAATTAAGAATCAATTCGGAATGGCAAATCCCGTTTTTGAGTTTAATGGAACCGGAAAATCGCAAAAACGCACATCACACCAGCAAACGGTCCCTACAATCCGCCCAGACTGGGGAATCCAAAACTACGGCAGTTAGTGATTTTTGTGAGAATTACACAATTATGATCTACGAGAAGGATATGGTGTTAACGATGAAGTATCAATATATGAATTTAACAAAATCGGATATGGAGAAATTTGTGAAATTGAGAAAGTTGGAACATGAGAATCTCAACAAATTTATCGGATTATCGATTGACGGATCTCAATTCATCTCGGTCACTAAACTATGTTCCAGAGGATCCCTTCAAGACATTCTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATMAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAAAACTTTGAATCCATGCAACTTTTCAAGATTTGGGATTTTTTTTCAAAGTTTTTTTTCAAATGAAAACTACATATATGACCAGAAAACTTGTTCTAAATTGGGTGATTTACAAGAAAAACCAACTTTCTAGCTTTTCTATGAGCGGAGATACAGCGATTCAAAGTTTAGGAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAACCTCGGAAACTTCAAGTGGTCCTATCTTGGGTTCTAGAAGAGCTAGAAGGTTGATTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTCTCGTGGAAACTTCTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGACAACTGTGAAATAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>282</pcr_amplicon_size>
		<canonical_amplicon>CTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>CTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATMAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29628</snp_id>
        <super_contig>c004800432.Contig2</super_contig>
        <contig_pos>12050</contig_pos>
        <strand>+</strand>
        <context>YATMAAGGAT[A/G]TTGCGGAGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGAT</left_flank>
        <right_flank>TTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGTGGCACTTGTCGTAATTATCCTAATGCTAATTACCCTAATCATCGGCTGCTGTTTTATCATGTCCAGTCGACGGGCTGAGCAATTAAGAATCAATTCGGAATGGCAAATCCCGTTTTTGAGTTTAATGGAACCGGAAAATCGCAAAAACGCACATCACACCAGCAAACGGTCCCTACAATCCGCCCAGACTGGGGAATCCAAAACTACGGCAGTTAGTGATTTTTGTGAGAATTACACAATTATGATCTACGAGAAGGATATGGTGTTAACGATGAAGTATCAATATATGAATTTAACAAAATCGGATATGGAGAAATTTGTGAAATTGAGAAAGTTGGAACATGAGAATCTCAACAAATTTATCGGATTATCGATTGACGGATCTCAATTCATCTCGGTCACTAAACTATGTTCCAGAGGATCCCTTCAAGACATTCTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAAAACTTTGAATCCATGCAACTTTTCAAGATTTGGGATTTTTTTTCAAAGTTTTTTTTCAAATGAAAACTACATATATGACCAGAAAACTTGTTCTAAATTGGGTGATTTACAAGAAAAACCAACTTTCTAGCTTTTCTATGAGCGGAGATACAGCGATTCAAAGTTTAGGAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAACCTCGGAAACTTCAAGTGGTCCTATCTTGGGTTCTAGAAGAGCTAGAAGGTTGATTTTTGCATCAAA</canonical>
            <polymorphic>AATTGTGGCACTTGTCGTAATTATCCTAATGCTAATTACCCTAATCATCGGCTGCTGTTTTATCATGTCCAGTCGACGGGCTGAGCAATTAAGAATCAATTCGGAATGGCAAATCCCGTTTTTGAGTTTAATGGAACCGGAAAATCGCAAAAACGCACATCACACCAGCAAACGGTCCCTACAATCCGCCCAGACTGGGGAATCCAAAACTACGGCAGTTAGTGATTTTTGTGAGAATTACACAATTATGATCTACGAGAAGGATATGGTGTTAACGATGAAGTATCAATATATGAATTTAACAAAATCGGATATGGAGAAATTTGTGAAATTGAGAAAGTTGGAACATGAGAATCTCAACAAATTTATCGGATTATCGATTGACGGATCTCAATTCATCTCGGTCACTAAACTATGTTCCAGAGGATCCCTTCAAGACATTCTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATRTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAAAACTTTGAATCCATGCAACTTTTCAAGATTTGGGATTTTTTTTCAAAGTTTTTTTTCAAATGAAAACTACATATATGACCAGAAAACTTGTTCTAAATTGGGTGATTTACAAGAAAAACCAACTTTCTAGCTTTTCTATGAGCGGAGATACAGCGATTCAAAGTTTAGGAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAACCTCGGAAACTTCAAGTGGTCCTATCTTGGGTTCTAGAAGAGCTAGAAGGTTGATTTTTGCATCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTCTCGTGGAAACTTCTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGACAACTGTGAAATAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>282</pcr_amplicon_size>
		<canonical_amplicon>CTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>CTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATRTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29629</snp_id>
        <super_contig>c004800432.Contig2</super_contig>
        <contig_pos>12067</contig_pos>
        <strand>+</strand>
        <context>AGGTGGGTTT[C/G]GYGAAARMAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTT</left_flank>
        <right_flank>GTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTATCCTAATGCTAATTACCCTAATCATCGGCTGCTGTTTTATCATGTCCAGTCGACGGGCTGAGCAATTAAGAATCAATTCGGAATGGCAAATCCCGTTTTTGAGTTTAATGGAACCGGAAAATCGCAAAAACGCACATCACACCAGCAAACGGTCCCTACAATCCGCCCAGACTGGGGAATCCAAAACTACGGCAGTTAGTGATTTTTGTGAGAATTACACAATTATGATCTACGAGAAGGATATGGTGTTAACGATGAAGTATCAATATATGAATTTAACAAAATCGGATATGGAGAAATTTGTGAAATTGAGAAAGTTGGAACATGAGAATCTCAACAAATTTATCGGATTATCGATTGACGGATCTCAATTCATCTCGGTCACTAAACTATGTTCCAGAGGATCCCTTCAAGACATTCTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAAAACTTTGAATCCATGCAACTTTTCAAGATTTGGGATTTTTTTTCAAAGTTTTTTTTCAAATGAAAACTACATATATGACCAGAAAACTTGTTCTAAATTGGGTGATTTACAAGAAAAACCAACTTTCTAGCTTTTCTATGAGCGGAGATACAGCGATTCAAAGTTTAGGAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAACCTCGGAAACTTCAAGTGGTCCTATCTTGGGTTCTAGAAGAGCTAGAAGGTTGATTTTTGCATCAAATCAACGGCCGAGATAGT</canonical>
            <polymorphic>TAATTATCCTAATGCTAATTACCCTAATCATCGGCTGCTGTTTTATCATGTCCAGTCGACGGGCTGAGCAATTAAGAATCAATTCGGAATGGCAAATCCCGTTTTTGAGTTTAATGGAACCGGAAAATCGCAAAAACGCACATCACACCAGCAAACGGTCCCTACAATCCGCCCAGACTGGGGAATCCAAAACTACGGCAGTTAGTGATTTTTGTGAGAATTACACAATTATGATCTACGAGAAGGATATGGTGTTAACGATGAAGTATCAATATATGAATTTAACAAAATCGGATATGGAGAAATTTGTGAAATTGAGAAAGTTGGAACATGAGAATCTCAACAAATTTATCGGATTATCGATTGACGGATCTCAATTCATCTCGGTCACTAAACTATGTTCCAGAGGATCCCTTCAAGACATTCTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTSGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAAAACTTTGAATCCATGCAACTTTTCAAGATTTGGGATTTTTTTTCAAAGTTTTTTTTCAAATGAAAACTACATATATGACCAGAAAACTTGTTCTAAATTGGGTGATTTACAAGAAAAACCAACTTTCTAGCTTTTCTATGAGCGGAGATACAGCGATTCAAAGTTTAGGAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAACCTCGGAAACTTCAAGTGGTCCTATCTTGGGTTCTAGAAGAGCTAGAAGGTTGATTTTTGCATCAAATCAACGGCCGAGATAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAACTTCTCGATGGATTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGACAACTGTGAAATAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>GGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTSGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29630</snp_id>
        <super_contig>c004800432.Contig2</super_contig>
        <contig_pos>12069</contig_pos>
        <strand>+</strand>
        <context>GTGGGTTTSG[C/T]GAAARMATGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGG</left_flank>
        <right_flank>GAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTATCCTAATGCTAATTACCCTAATCATCGGCTGCTGTTTTATCATGTCCAGTCGACGGGCTGAGCAATTAAGAATCAATTCGGAATGGCAAATCCCGTTTTTGAGTTTAATGGAACCGGAAAATCGCAAAAACGCACATCACACCAGCAAACGGTCCCTACAATCCGCCCAGACTGGGGAATCCAAAACTACGGCAGTTAGTGATTTTTGTGAGAATTACACAATTATGATCTACGAGAAGGATATGGTGTTAACGATGAAGTATCAATATATGAATTTAACAAAATCGGATATGGAGAAATTTGTGAAATTGAGAAAGTTGGAACATGAGAATCTCAACAAATTTATCGGATTATCGATTGACGGATCTCAATTCATCTCGGTCACTAAACTATGTTCCAGAGGATCCCTTCAAGACATTCTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAAAACTTTGAATCCATGCAACTTTTCAAGATTTGGGATTTTTTTTCAAAGTTTTTTTTCAAATGAAAACTACATATATGACCAGAAAACTTGTTCTAAATTGGGTGATTTACAAGAAAAACCAACTTTCTAGCTTTTCTATGAGCGGAGATACAGCGATTCAAAGTTTAGGAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAACCTCGGAAACTTCAAGTGGTCCTATCTTGGGTTCTAGAAGAGCTAGAAGGTTGATTTTTGCATCAAATCAACGGCCGAGATAGTGT</canonical>
            <polymorphic>ATTATCCTAATGCTAATTACCCTAATCATCGGCTGCTGTTTTATCATGTCCAGTCGACGGGCTGAGCAATTAAGAATCAATTCGGAATGGCAAATCCCGTTTTTGAGTTTAATGGAACCGGAAAATCGCAAAAACGCACATCACACCAGCAAACGGTCCCTACAATCCGCCCAGACTGGGGAATCCAAAACTACGGCAGTTAGTGATTTTTGTGAGAATTACACAATTATGATCTACGAGAAGGATATGGTGTTAACGATGAAGTATCAATATATGAATTTAACAAAATCGGATATGGAGAAATTTGTGAAATTGAGAAAGTTGGAACATGAGAATCTCAACAAATTTATCGGATTATCGATTGACGGATCTCAATTCATCTCGGTCACTAAACTATGTTCCAGAGGATCCCTTCAAGACATTCTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGYGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAAAACTTTGAATCCATGCAACTTTTCAAGATTTGGGATTTTTTTTCAAAGTTTTTTTTCAAATGAAAACTACATATATGACCAGAAAACTTGTTCTAAATTGGGTGATTTACAAGAAAAACCAACTTTCTAGCTTTTCTATGAGCGGAGATACAGCGATTCAAAGTTTAGGAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAACCTCGGAAACTTCAAGTGGTCCTATCTTGGGTTCTAGAAGAGCTAGAAGGTTGATTTTTGCATCAAATCAACGGCCGAGATAGTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>138 116 94 91 79 67 62 60 59 57 45 30 29 22 12 9 9 9 5 2 2 2 1</canonical_bands>
                <polymorphic_bands>138 116 94 91 79 71 67 60 59 57 45 30 29 22 12 9 9 5 2 2 2 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAACTTCTCGATGGATTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGACAACTGTGAAATAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>GGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGYGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29631</snp_id>
        <super_contig>c004800432.Contig2</super_contig>
        <contig_pos>12074</contig_pos>
        <strand>+</strand>
        <context>TTTSGYGAAA[A/G]MATGGGGttt</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAA</left_flank>
        <right_flank>AATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTAATGCTAATTACCCTAATCATCGGCTGCTGTTTTATCATGTCCAGTCGACGGGCTGAGCAATTAAGAATCAATTCGGAATGGCAAATCCCGTTTTTGAGTTTAATGGAACCGGAAAATCGCAAAAACGCACATCACACCAGCAAACGGTCCCTACAATCCGCCCAGACTGGGGAATCCAAAACTACGGCAGTTAGTGATTTTTGTGAGAATTACACAATTATGATCTACGAGAAGGATATGGTGTTAACGATGAAGTATCAATATATGAATTTAACAAAATCGGATATGGAGAAATTTGTGAAATTGAGAAAGTTGGAACATGAGAATCTCAACAAATTTATCGGATTATCGATTGACGGATCTCAATTCATCTCGGTCACTAAACTATGTTCCAGAGGATCCCTTCAAGACATTCTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAAAACTTTGAATCCATGCAACTTTTCAAGATTTGGGATTTTTTTTCAAAGTTTTTTTTCAAATGAAAACTACATATATGACCAGAAAACTTGTTCTAAATTGGGTGATTTACAAGAAAAACCAACTTTCTAGCTTTTCTATGAGCGGAGATACAGCGATTCAAAGTTTAGGAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAACCTCGGAAACTTCAAGTGGTCCTATCTTGGGTTCTAGAAGAGCTAGAAGGTTGATTTTTGCATCAAATCAACGGCCGAGATAGTGTTTTGA</canonical>
            <polymorphic>CCTAATGCTAATTACCCTAATCATCGGCTGCTGTTTTATCATGTCCAGTCGACGGGCTGAGCAATTAAGAATCAATTCGGAATGGCAAATCCCGTTTTTGAGTTTAATGGAACCGGAAAATCGCAAAAACGCACATCACACCAGCAAACGGTCCCTACAATCCGCCCAGACTGGGGAATCCAAAACTACGGCAGTTAGTGATTTTTGTGAGAATTACACAATTATGATCTACGAGAAGGATATGGTGTTAACGATGAAGTATCAATATATGAATTTAACAAAATCGGATATGGAGAAATTTGTGAAATTGAGAAAGTTGGAACATGAGAATCTCAACAAATTTATCGGATTATCGATTGACGGATCTCAATTCATCTCGGTCACTAAACTATGTTCCAGAGGATCCCTTCAAGACATTCTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAARAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAAAACTTTGAATCCATGCAACTTTTCAAGATTTGGGATTTTTTTTCAAAGTTTTTTTTCAAATGAAAACTACATATATGACCAGAAAACTTGTTCTAAATTGGGTGATTTACAAGAAAAACCAACTTTCTAGCTTTTCTATGAGCGGAGATACAGCGATTCAAAGTTTAGGAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAACCTCGGAAACTTCAAGTGGTCCTATCTTGGGTTCTAGAAGAGCTAGAAGGTTGATTTTTGCATCAAATCAACGGCCGAGATAGTGTTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAACTTCTCGATGGATTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGACAACTGTGAAATAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>GGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAARAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29632</snp_id>
        <super_contig>c004800432.Contig2</super_contig>
        <contig_pos>12075</contig_pos>
        <strand>+</strand>
        <context>TTSGYGAAAR[A/C]ATGGGGtttc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAG</left_flank>
        <right_flank>ATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAATGCTAATTACCCTAATCATCGGCTGCTGTTTTATCATGTCCAGTCGACGGGCTGAGCAATTAAGAATCAATTCGGAATGGCAAATCCCGTTTTTGAGTTTAATGGAACCGGAAAATCGCAAAAACGCACATCACACCAGCAAACGGTCCCTACAATCCGCCCAGACTGGGGAATCCAAAACTACGGCAGTTAGTGATTTTTGTGAGAATTACACAATTATGATCTACGAGAAGGATATGGTGTTAACGATGAAGTATCAATATATGAATTTAACAAAATCGGATATGGAGAAATTTGTGAAATTGAGAAAGTTGGAACATGAGAATCTCAACAAATTTATCGGATTATCGATTGACGGATCTCAATTCATCTCGGTCACTAAACTATGTTCCAGAGGATCCCTTCAAGACATTCTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAAAACTTTGAATCCATGCAACTTTTCAAGATTTGGGATTTTTTTTCAAAGTTTTTTTTCAAATGAAAACTACATATATGACCAGAAAACTTGTTCTAAATTGGGTGATTTACAAGAAAAACCAACTTTCTAGCTTTTCTATGAGCGGAGATACAGCGATTCAAAGTTTAGGAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAACCTCGGAAACTTCAAGTGGTCCTATCTTGGGTTCTAGAAGAGCTAGAAGGTTGATTTTTGCATCAAATCAACGGCCGAGATAGTGTTTTGAA</canonical>
            <polymorphic>CTAATGCTAATTACCCTAATCATCGGCTGCTGTTTTATCATGTCCAGTCGACGGGCTGAGCAATTAAGAATCAATTCGGAATGGCAAATCCCGTTTTTGAGTTTAATGGAACCGGAAAATCGCAAAAACGCACATCACACCAGCAAACGGTCCCTACAATCCGCCCAGACTGGGGAATCCAAAACTACGGCAGTTAGTGATTTTTGTGAGAATTACACAATTATGATCTACGAGAAGGATATGGTGTTAACGATGAAGTATCAATATATGAATTTAACAAAATCGGATATGGAGAAATTTGTGAAATTGAGAAAGTTGGAACATGAGAATCTCAACAAATTTATCGGATTATCGATTGACGGATCTCAATTCATCTCGGTCACTAAACTATGTTCCAGAGGATCCCTTCAAGACATTCTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGMATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAAAACTTTGAATCCATGCAACTTTTCAAGATTTGGGATTTTTTTTCAAAGTTTTTTTTCAAATGAAAACTACATATATGACCAGAAAACTTGTTCTAAATTGGGTGATTTACAAGAAAAACCAACTTTCTAGCTTTTCTATGAGCGGAGATACAGCGATTCAAAGTTTAGGAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAACCTCGGAAACTTCAAGTGGTCCTATCTTGGGTTCTAGAAGAGCTAGAAGGTTGATTTTTGCATCAAATCAACGGCCGAGATAGTGTTTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAACTTCTCGATGGATTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGACAACTGTGAAATAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>GGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGMATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29633</snp_id>
        <super_contig>c004800432.Contig2</super_contig>
        <contig_pos>12118</contig_pos>
        <strand></strand>
        <context>actggaattt[C/A]aacatctggt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTT</left_flank>
        <right_flank>AACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGTCGACGGGCTGAGCAATTAAGAATCAATTCGGAATGGCAAATCCCGTTTTTGAGTTTAATGGAACCGGAAAATCGCAAAAACGCACATCACACCAGCAAACGGTCCCTACAATCCGCCCAGACTGGGGAATCCAAAACTACGGCAGTTAGTGATTTTTGTGAGAATTACACAATTATGATCTACGAGAAGGATATGGTGTTAACGATGAAGTATCAATATATGAATTTAACAAAATCGGATATGGAGAAATTTGTGAAATTGAGAAAGTTGGAACATGAGAATCTCAACAAATTTATCGGATTATCGATTGACGGATCTCAATTCATCTCGGTCACTAAACTATGTTCCAGAGGATCCCTTCAAGACATTCTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAAAACTTTGAATCCATGCAACTTTTCAAGATTTGGGATTTTTTTTCAAAGTTTTTTTTCAAATGAAAACTACATATATGACCAGAAAACTTGTTCTAAATTGGGTGATTTACAAGAAAAACCAACTTTCTAGCTTTTCTATGAGCGGAGATACAGCGATTCAAAGTTTAGGAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAACCTCGGAAACTTCAAGTGGTCCTATCTTGGGTTCTAGAAGAGCTAGAAGGTTGATTTTTGCATCAAATCAACGGCCGAGATAGTGTTTTGAAGCTTTAGAGACTAGAGACGCAGACAAGGAGACACCCTAACTGC</canonical>
            <polymorphic>CCAGTCGACGGGCTGAGCAATTAAGAATCAATTCGGAATGGCAAATCCCGTTTTTGAGTTTAATGGAACCGGAAAATCGCAAAAACGCACATCACACCAGCAAACGGTCCCTACAATCCGCCCAGACTGGGGAATCCAAAACTACGGCAGTTAGTGATTTTTGTGAGAATTACACAATTATGATCTACGAGAAGGATATGGTGTTAACGATGAAGTATCAATATATGAATTTAACAAAATCGGATATGGAGAAATTTGTGAAATTGAGAAAGTTGGAACATGAGAATCTCAACAAATTTATCGGATTATCGATTGACGGATCTCAATTCATCTCGGTCACTAAACTATGTTCCAGAGGATCCCTTCAAGACATTCTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTMAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAAAACTTTGAATCCATGCAACTTTTCAAGATTTGGGATTTTTTTTCAAAGTTTTTTTTCAAATGAAAACTACATATATGACCAGAAAACTTGTTCTAAATTGGGTGATTTACAAGAAAAACCAACTTTCTAGCTTTTCTATGAGCGGAGATACAGCGATTCAAAGTTTAGGAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAACCTCGGAAACTTCAAGTGGTCCTATCTTGGGTTCTAGAAGAGCTAGAAGGTTGATTTTTGCATCAAATCAACGGCCGAGATAGTGTTTTGAAGCTTTAGAGACTAGAGACGCAGACAAGGAGACACCCTAACTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAACTTCTCGATGGATTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGACAACTGTGAAATAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>GGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTMAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29634</snp_id>
        <super_contig>c004800432.Contig2</super_contig>
        <contig_pos>12206</contig_pos>
        <strand></strand>
        <context>tttcggctcg[C/T]agacatcctr</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCG</left_flank>
        <right_flank>AGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATCACACCAGCAAACGGTCCCTACAATCCGCCCAGACTGGGGAATCCAAAACTACGGCAGTTAGTGATTTTTGTGAGAATTACACAATTATGATCTACGAGAAGGATATGGTGTTAACGATGAAGTATCAATATATGAATTTAACAAAATCGGATATGGAGAAATTTGTGAAATTGAGAAAGTTGGAACATGAGAATCTCAACAAATTTATCGGATTATCGATTGACGGATCTCAATTCATCTCGGTCACTAAACTATGTTCCAGAGGATCCCTTCAAGACATTCTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAAAACTTTGAATCCATGCAACTTTTCAAGATTTGGGATTTTTTTTCAAAGTTTTTTTTCAAATGAAAACTACATATATGACCAGAAAACTTGTTCTAAATTGGGTGATTTACAAGAAAAACCAACTTTCTAGCTTTTCTATGAGCGGAGATACAGCGATTCAAAGTTTAGGAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAACCTCGGAAACTTCAAGTGGTCCTATCTTGGGTTCTAGAAGAGCTAGAAGGTTGATTTTTGCATCAAATCAACGGCCGAGATAGTGTTTTGAAGCTTTAGAGACTAGAGACGCAGACAAGGAGACACCCTAACTGCCTGCGTCTCTTCACAACTTCAATTGGCTATATCTCGACTCCCAGGCGGTCTAGAAAGCTGATTTTTGCGCCAAACAGAGCTGATGACA</canonical>
            <polymorphic>ACATCACACCAGCAAACGGTCCCTACAATCCGCCCAGACTGGGGAATCCAAAACTACGGCAGTTAGTGATTTTTGTGAGAATTACACAATTATGATCTACGAGAAGGATATGGTGTTAACGATGAAGTATCAATATATGAATTTAACAAAATCGGATATGGAGAAATTTGTGAAATTGAGAAAGTTGGAACATGAGAATCTCAACAAATTTATCGGATTATCGATTGACGGATCTCAATTCATCTCGGTCACTAAACTATGTTCCAGAGGATCCCTTCAAGACATTCTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGYAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAAAACTTTGAATCCATGCAACTTTTCAAGATTTGGGATTTTTTTTCAAAGTTTTTTTTCAAATGAAAACTACATATATGACCAGAAAACTTGTTCTAAATTGGGTGATTTACAAGAAAAACCAACTTTCTAGCTTTTCTATGAGCGGAGATACAGCGATTCAAAGTTTAGGAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAACCTCGGAAACTTCAAGTGGTCCTATCTTGGGTTCTAGAAGAGCTAGAAGGTTGATTTTTGCATCAAATCAACGGCCGAGATAGTGTTTTGAAGCTTTAGAGACTAGAGACGCAGACAAGGAGACACCCTAACTGCCTGCGTCTCTTCACAACTTCAATTGGCTATATCTCGACTCCCAGGCGGTCTAGAAAGCTGATTTTTGCGCCAAACAGAGCTGATGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>497 416 87</canonical_bands>
                <polymorphic_bands>913 87</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAACTTCTCGATGGATTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGACAACTGTGAAATAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>GGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGYAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29635</snp_id>
        <super_contig>c004800432.Contig2</super_contig>
        <contig_pos>12216</contig_pos>
        <strand></strand>
        <context>yagacatcct[G/A]gaaagatgat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCT</left_flank>
        <right_flank>GAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCAAACGGTCCCTACAATCCGCCCAGACTGGGGAATCCAAAACTACGGCAGTTAGTGATTTTTGTGAGAATTACACAATTATGATCTACGAGAAGGATATGGTGTTAACGATGAAGTATCAATATATGAATTTAACAAAATCGGATATGGAGAAATTTGTGAAATTGAGAAAGTTGGAACATGAGAATCTCAACAAATTTATCGGATTATCGATTGACGGATCTCAATTCATCTCGGTCACTAAACTATGTTCCAGAGGATCCCTTCAAGACATTCTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAAAACTTTGAATCCATGCAACTTTTCAAGATTTGGGATTTTTTTTCAAAGTTTTTTTTCAAATGAAAACTACATATATGACCAGAAAACTTGTTCTAAATTGGGTGATTTACAAGAAAAACCAACTTTCTAGCTTTTCTATGAGCGGAGATACAGCGATTCAAAGTTTAGGAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAACCTCGGAAACTTCAAGTGGTCCTATCTTGGGTTCTAGAAGAGCTAGAAGGTTGATTTTTGCATCAAATCAACGGCCGAGATAGTGTTTTGAAGCTTTAGAGACTAGAGACGCAGACAAGGAGACACCCTAACTGCCTGCGTCTCTTCACAACTTCAATTGGCTATATCTCGACTCCCAGGCGGTCTAGAAAGCTGATTTTTGCGCCAAACAGAGCTGATGACATGTCAATTTT</canonical>
            <polymorphic>AGCAAACGGTCCCTACAATCCGCCCAGACTGGGGAATCCAAAACTACGGCAGTTAGTGATTTTTGTGAGAATTACACAATTATGATCTACGAGAAGGATATGGTGTTAACGATGAAGTATCAATATATGAATTTAACAAAATCGGATATGGAGAAATTTGTGAAATTGAGAAAGTTGGAACATGAGAATCTCAACAAATTTATCGGATTATCGATTGACGGATCTCAATTCATCTCGGTCACTAAACTATGTTCCAGAGGATCCCTTCAAGACATTCTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTRGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAAAACTTTGAATCCATGCAACTTTTCAAGATTTGGGATTTTTTTTCAAAGTTTTTTTTCAAATGAAAACTACATATATGACCAGAAAACTTGTTCTAAATTGGGTGATTTACAAGAAAAACCAACTTTCTAGCTTTTCTATGAGCGGAGATACAGCGATTCAAAGTTTAGGAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAACCTCGGAAACTTCAAGTGGTCCTATCTTGGGTTCTAGAAGAGCTAGAAGGTTGATTTTTGCATCAAATCAACGGCCGAGATAGTGTTTTGAAGCTTTAGAGACTAGAGACGCAGACAAGGAGACACCCTAACTGCCTGCGTCTCTTCACAACTTCAATTGGCTATATCTCGACTCCCAGGCGGTCTAGAAAGCTGATTTTTGCGCCAAACAGAGCTGATGACATGTCAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>498 446 56</canonical_bands>
                <polymorphic_bands>944 56</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>498 446 56</canonical_bands>
                <polymorphic_bands>944 56</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAACTTCTCGATGGATTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGACAACTGTGAAATAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>GGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTRGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29636</snp_id>
        <super_contig>c004800432.Contig2</super_contig>
        <contig_pos>12251</contig_pos>
        <strand>+</strand>
        <context>AGAATACACA[A/C]TTTCTATTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACA</left_flank>
        <right_flank>TTTCTATTTCACAGTTGTCAAAAAACTTTGAATCCATGCAACTTTTCAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCAAAACTACGGCAGTTAGTGATTTTTGTGAGAATTACACAATTATGATCTACGAGAAGGATATGGTGTTAACGATGAAGTATCAATATATGAATTTAACAAAATCGGATATGGAGAAATTTGTGAAATTGAGAAAGTTGGAACATGAGAATCTCAACAAATTTATCGGATTATCGATTGACGGATCTCAATTCATCTCGGTCACTAAACTATGTTCCAGAGGATCCCTTCAAGACATTCTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAAAACTTTGAATCCATGCAACTTTTCAAGATTTGGGATTTTTTTTCAAAGTTTTTTTTCAAATGAAAACTACATATATGACCAGAAAACTTGTTCTAAATTGGGTGATTTACAAGAAAAACCAACTTTCTAGCTTTTCTATGAGCGGAGATACAGCGATTCAAAGTTTAGGAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAACCTCGGAAACTTCAAGTGGTCCTATCTTGGGTTCTAGAAGAGCTAGAAGGTTGATTTTTGCATCAAATCAACGGCCGAGATAGTGTTTTGAAGCTTTAGAGACTAGAGACGCAGACAAGGAGACACCCTAACTGCCTGCGTCTCTTCACAACTTCAATTGGCTATATCTCGACTCCCAGGCGGTCTAGAAAGCTGATTTTTGCGCCAAACAGAGCTGATGACATGTCAATTTTTTTGAATCCAAAATCACAAGCTCTAATTTTTTTTT</canonical>
            <polymorphic>ATCCAAAACTACGGCAGTTAGTGATTTTTGTGAGAATTACACAATTATGATCTACGAGAAGGATATGGTGTTAACGATGAAGTATCAATATATGAATTTAACAAAATCGGATATGGAGAAATTTGTGAAATTGAGAAAGTTGGAACATGAGAATCTCAACAAATTTATCGGATTATCGATTGACGGATCTCAATTCATCTCGGTCACTAAACTATGTTCCAGAGGATCCCTTCAAGACATTCTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACAMTTTCTATTTCACAGTTGTCAAAAAACTTTGAATCCATGCAACTTTTCAAGATTTGGGATTTTTTTTCAAAGTTTTTTTTCAAATGAAAACTACATATATGACCAGAAAACTTGTTCTAAATTGGGTGATTTACAAGAAAAACCAACTTTCTAGCTTTTCTATGAGCGGAGATACAGCGATTCAAAGTTTAGGAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAACCTCGGAAACTTCAAGTGGTCCTATCTTGGGTTCTAGAAGAGCTAGAAGGTTGATTTTTGCATCAAATCAACGGCCGAGATAGTGTTTTGAAGCTTTAGAGACTAGAGACGCAGACAAGGAGACACCCTAACTGCCTGCGTCTCTTCACAACTTCAATTGGCTATATCTCGACTCCCAGGCGGTCTAGAAAGCTGATTTTTGCGCCAAACAGAGCTGATGACATGTCAATTTTTTTGAATCCAAAATCACAAGCTCTAATTTTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>116 101 94 91 79 67 62 59 57 45 40 30 29 23 23 22 19 12 9 9 9 2 2</canonical_bands>
                <polymorphic_bands>116 101 94 91 79 67 62 59 57 45 40 30 29 23 23 22 19 14 9 9 9 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAACTTCTCGATGGATTAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATCCCAAATCTTGAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>GGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAAAACTTTGAATCCATGCAACTTTTCAAGATTTGGGATTTT</canonical_amplicon>
		<polymorphic_amplicon>GGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACAMTTTCTATTTCACAGTTGTCAAAAAACTTTGAATCCATGCAACTTTTCAAGATTTGGGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29637</snp_id>
        <super_contig>c004800432.Contig2</super_contig>
        <contig_pos>12367</contig_pos>
        <strand></strand>
        <context>AAAACTTGTT[C/T]TAAATTGGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAAAGTTTTTTTTCAAATGAAAACTACATATATGACCAGAAAACTTGTT</left_flank>
        <right_flank>TAAATTGGGTGATTTACAAGAAAAACCAACTTTCTAGCTTTTCTATGAGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAATTTGTGAAATTGAGAAAGTTGGAACATGAGAATCTCAACAAATTTATCGGATTATCGATTGACGGATCTCAATTCATCTCGGTCACTAAACTATGTTCCAGAGGATCCCTTCAAGACATTCTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAAAACTTTGAATCCATGCAACTTTTCAAGATTTGGGATTTTTTTTCAAAGTTTTTTTTCAAATGAAAACTACATATATGACCAGAAAACTTGTTCTAAATTGGGTGATTTACAAGAAAAACCAACTTTCTAGCTTTTCTATGAGCGGAGATACAGCGATTCAAAGTTTAGGAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAACCTCGGAAACTTCAAGTGGTCCTATCTTGGGTTCTAGAAGAGCTAGAAGGTTGATTTTTGCATCAAATCAACGGCCGAGATAGTGTTTTGAAGCTTTAGAGACTAGAGACGCAGACAAGGAGACACCCTAACTGCCTGCGTCTCTTCACAACTTCAATTGGCTATATCTCGACTCCCAGGCGGTCTAGAAAGCTGATTTTTGCGCCAAACAGAGCTGATGACATGTCAATTTTTTTGAATCCAAAATCACAAGCTCTAATTTTTTTTTGAATCTGAAAAAGTCGAAATTATGGACCGCTTGATTTTTCTACTGAATTGTCTGAAATTTTATTGTGTTTTCTATCCTTACATTTTTCAATGCGTTTTTAGCAAGTTGATCTAAAA</canonical>
            <polymorphic>AGAAATTTGTGAAATTGAGAAAGTTGGAACATGAGAATCTCAACAAATTTATCGGATTATCGATTGACGGATCTCAATTCATCTCGGTCACTAAACTATGTTCCAGAGGATCCCTTCAAGACATTCTGTCTCGTGGAAACTTCTCGATGGATTACTTTTTCATGTTTTGCATTATCAAGGATGTTGCGGAGGTGGGTTTGGTGAAAGAATGGGGTTTCTAGGCCTTCTAGGAGCTGAGATACTGGAATTTCAACATCTGGTAGTGAGAGACGCAGACAACGAGAGCACTCTAACTGTCTGCGACTTTCCTAAACTTCAAAACGATGTATTTCGGCTCGCAGACATCCTGGAAAGATGATTTTTTGACAGAAATAGAATACACACTTTCTATTTCACAGTTGTCAAAAAACTTTGAATCCATGCAACTTTTCAAGATTTGGGATTTTTTTTCAAAGTTTTTTTTCAAATGAAAACTACATATATGACCAGAAAACTTGTTYTAAATTGGGTGATTTACAAGAAAAACCAACTTTCTAGCTTTTCTATGAGCGGAGATACAGCGATTCAAAGTTTAGGAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAACCTCGGAAACTTCAAGTGGTCCTATCTTGGGTTCTAGAAGAGCTAGAAGGTTGATTTTTGCATCAAATCAACGGCCGAGATAGTGTTTTGAAGCTTTAGAGACTAGAGACGCAGACAAGGAGACACCCTAACTGCCTGCGTCTCTTCACAACTTCAATTGGCTATATCTCGACTCCCAGGCGGTCTAGAAAGCTGATTTTTGCGCCAAACAGAGCTGATGACATGTCAATTTTTTTGAATCCAAAATCACAAGCTCTAATTTTTTTTTGAATCTGAAAAAGTCGAAATTATGGACCGCTTGATTTTTCTACTGAATTGTCTGAAATTTTATTGTGTTTTCTATCCTTACATTTTTCAATGCGTTTTTAGCAAGTTGATCTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAAGATTTGGGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>GACATGTCATCAGCTCTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>417</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAAGATTTGGGATTTTTTTTCAAAGTTTTTTTTCAAATGAAAACTACATATATGACCAGAAAACTTGTTCTAAATTGGGTGATTTACAAGAAAAACCAACTTTCTAGCTTTTCTATGAGCGGAGATACAGCGATTCAAAGTTTAGGAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAACCTCGGAAACTTCAAGTGGTCCTATCTTGGGTTCTAGAAGAGCTAGAAGGTTGATTTTTGCATCAAATCAACGGCCGAGATAGTGTTTTGAAGCTTTAGAGACTAGAGACGCAGACAAGGAGACACCCTAACTGCCTGCGTCTCTTCACAACTTCAATTGGCTATATCTCGACTCCCAGGCGGTCTAGAAAGCTGATTTTTGCGCCAAACAGAGCTGATGACATGTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAAGATTTGGGATTTTTTTTCAAAGTTTTTTTTCAAATGAAAACTACATATATGACCAGAAAACTTGTTYTAAATTGGGTGATTTACAAGAAAAACCAACTTTCTAGCTTTTCTATGAGCGGAGATACAGCGATTCAAAGTTTAGGAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAACCTCGGAAACTTCAAGTGGTCCTATCTTGGGTTCTAGAAGAGCTAGAAGGTTGATTTTTGCATCAAATCAACGGCCGAGATAGTGTTTTGAAGCTTTAGAGACTAGAGACGCAGACAAGGAGACACCCTAACTGCCTGCGTCTCTTCACAACTTCAATTGGCTATATCTCGACTCCCAGGCGGTCTAGAAAGCTGATTTTTGCGCCAAACAGAGCTGATGACATGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29638</snp_id>
        <super_contig>c004801456.Contig1</super_contig>
        <contig_pos>107979</contig_pos>
        <strand></strand>
        <context>AGCTCATTAA[C/A]TTCAGCTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTGACGTCGCTGGGCTTCTTGTTCTGGGGTAGGTGCAACGAGCTCATTAA</left_flank>
        <right_flank>TTCAGCTTCTGAAGATGGGCAAAGATTCTTATTGAGCATAACGTGAGGGA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTACAAAATATCCGAAACGGGGAAAAAATTAAAAAAGGAAGATCTAGCAAACATAAAAATAAAAATCTACTAAGCACTACGAAACTCATTTTTCTTCATTCCCTTTCCTATACAGCCAGATAACTTCTATATTATCTTTTATCAAATTCCAATGCTCCAAAACGAATTGTCCATTGGATCCAGCGTACAATTGTCCTAAAAGTCCAGTATCTCCGCATCTAATCATTTCCATGTTTGATCCATCCACCTTCTCTTTCATGAGAGTCAATATCGCATCTAATGGCAGAAATTGAATAGCGAACTCTTGAACTTGTTGAGACTGAAAAGAAATTACAAATTAGACCAAAAATAGAGAAAAACACTTACTGTCCAGTCCTCATAGTTTATCGAATGGTTATAAGGAAGGTAAGTATCCTGGAACCATCCATTATACAAATTCATGCGTTCTTGACGTCGCTGGGCTTCTTGTTCTGGGGTAGGTGCAACGAGCTCATTAACTTCAGCTTCTGAAGATGGGCAAAGATTCTTATTGAGCATAACGTGAGGGAGACAAGTAGCTGGAGCAACCAACAATCCATGATTGGTCCGCTTAGCAATAAGAGAAGATACTGTTGGCTTATCAGTGAGAGCGTCTAGAGATGGCGAATATTTTCTCTTGTTGGAAACCTGGATACTCGGAGTGACAGCGACATGTGCTCTCCGGGCTTCTTGTGCGGCTGGCATACGTATTTGACGACAGAGGTCTTGTAGAAGACGCATTTGAGATCTCACATCTTTTTCACTACAAGTTATTTGTTCATTTTGCGCTTGGACTGAATCCTCAGGCGCTGGAGTCATTGGAGAGATGGGGTAGTCCATTTCTTCAGATATGATTGATGAAAGAAGGTGAGGTGGTTTTGAAGCATGCCGGGGGTAATCAACTGGAGCATTCACAGATTGTTTCTGAGCAACGTGAGCATGGAAGGCCGCACAAGCTTCCTGATGTTGTATGAGTAGTT</canonical>
            <polymorphic>ATTTACAAAATATCCGAAACGGGGAAAAAATTAAAAAAGGAAGATCTAGCAAACATAAAAATAAAAATCTACTAAGCACTACGAAACTCATTTTTCTTCATTCCCTTTCCTATACAGCCAGATAACTTCTATATTATCTTTTATCAAATTCCAATGCTCCAAAACGAATTGTCCATTGGATCCAGCGTACAATTGTCCTAAAAGTCCAGTATCTCCGCATCTAATCATTTCCATGTTTGATCCATCCACCTTCTCTTTCATGAGAGTCAATATCGCATCTAATGGCAGAAATTGAATAGCGAACTCTTGAACTTGTTGAGACTGAAAAGAAATTACAAATTAGACCAAAAATAGAGAAAAACACTTACTGTCCAGTCCTCATAGTTTATCGAATGGTTATAAGGAAGGTAAGTATCCTGGAACCATCCATTATACAAATTCATGCGTTCTTGACGTCGCTGGGCTTCTTGTTCTGGGGTAGGTGCAACGAGCTCATTAAMTTCAGCTTCTGAAGATGGGCAAAGATTCTTATTGAGCATAACGTGAGGGAGACAAGTAGCTGGAGCAACCAACAATCCATGATTGGTCCGCTTAGCAATAAGAGAAGATACTGTTGGCTTATCAGTGAGAGCGTCTAGAGATGGCGAATATTTTCTCTTGTTGGAAACCTGGATACTCGGAGTGACAGCGACATGTGCTCTCCGGGCTTCTTGTGCGGCTGGCATACGTATTTGACGACAGAGGTCTTGTAGAAGACGCATTTGAGATCTCACATCTTTTTCACTACAAGTTATTTGTTCATTTTGCGCTTGGACTGAATCCTCAGGCGCTGGAGTCATTGGAGAGATGGGGTAGTCCATTTCTTCAGATATGATTGATGAAAGAAGGTGAGGTGGTTTTGAAGCATGCCGGGGGTAATCAACTGGAGCATTCACAGATTGTTTCTGAGCAACGTGAGCATGGAAGGCCGCACAAGCTTCCTGATGTTGTATGAGTAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTCATAGTTTATCGAATGGTTA</pcr_primer_p1>
		<pcr_primer_p2>TGATAAGCCAACAGTATCTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCTCATAGTTTATCGAATGGTTATAAGGAAGGTAAGTATCCTGGAACCATCCATTATACAAATTCATGCGTTCTTGACGTCGCTGGGCTTCTTGTTCTGGGGTAGGTGCAACGAGCTCATTAACTTCAGCTTCTGAAGATGGGCAAAGATTCTTATTGAGCATAACGTGAGGGAGACAAGTAGCTGGAGCAACCAACAATCCATGATTGGTCCGCTTAGCAATAAGAGAAGATACTGTTGGCTTATCA</canonical_amplicon>
		<polymorphic_amplicon>CCTCATAGTTTATCGAATGGTTATAAGGAAGGTAAGTATCCTGGAACCATCCATTATACAAATTCATGCGTTCTTGACGTCGCTGGGCTTCTTGTTCTGGGGTAGGTGCAACGAGCTCATTAAMTTCAGCTTCTGAAGATGGGCAAAGATTCTTATTGAGCATAACGTGAGGGAGACAAGTAGCTGGAGCAACCAACAATCCATGATTGGTCCGCTTAGCAATAAGAGAAGATACTGTTGGCTTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29639</snp_id>
        <super_contig>c004801456.Contig1</super_contig>
        <contig_pos>109444</contig_pos>
        <strand></strand>
        <context>TTGGAGAGTG[A/T]AAGAATCGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAATGATTATTCGCATATATTGAAAAGAAATCTACTATTTGGAGAGTG</left_flank>
        <right_flank>AAGAATCGTAAATGATAGAGGTGATGAAACAGTCAAAAATGAATATAACA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTATAATCCGCTTCCAGAATCTTCATCTGACAAGGTAAATTTTCAAACGAAATTTCGCCCGCCAAATACGCATCCAGAACGGCTTTTCTTTTTTGAAAGAATAAGCTCAGAATGTGAAAAAACAAGGAAATTCTGGCATGAAAAAAAACAACTAAAATTGACATGCGTTTGTGTTATTCCGAAGTGGTCTGCCAACTTGTCCGCGAATTGTTTCAATATAAACTGTTCCTTTTCGAAATGATCCGAAACTTTTTGTTGAATTTCTATCCAATCAGTTTCATTTCTTCGAATCTGAAGAATGGTTTTTTGAGAACAAAAACTCAGTCAAAAAACTCACTCTTCTAGAATTCTTGATTTTAGTGGTCGCGGATTCTTCAGGATTCTGGTTCTCTTTCAAGGGGTTCTCCGAAGGATTTTCATTGGTTCTATGGAGATTTGACATCGGTAAAAAATGATTATTCGCATATATTGAAAAGAAATCTACTATTTGGAGAGTGAAAGAATCGTAAATGATAGAGGTGATGAAACAGTCAAAAATGAATATAACATCTAAAGTAAGAAAGTTGTCAGTGAGATAAAAAAAAAAGATGGAGAGGGAGAGGCACACACGCAGCAAGGGATCACAAATAACTCTCCTTTCAGACTGGCCCACACCATTGTGCGTATCACGGAGAACGGGTATTGATCGGTGCCTACATGCAGACGCTAACTCATCCCGCGCAAATGTTGGTCACATTTGATCTATTATGTAAATTTTAGTCTCGGCAGGCCTAACAAGGGAATGTCGTTCAGAAAGCTCTTCAGAATTTTCTCTAAAATGGCTCATTTATAGAATCGAGTATGGGCTTTTACGTAATAATAGTCTCTACCTGCAAAAATCGCTGAAAATCGAGAAAAATCGATCTGAAATTATAGCATTTCCACCAGTCTCATCGCCTCTCTTCTCCTCCCCTTTCTTCACTGCGTTGCGTGCAAGAGTAAAACACATCTCGGTAGCC</canonical>
            <polymorphic>TTCTATAATCCGCTTCCAGAATCTTCATCTGACAAGGTAAATTTTCAAACGAAATTTCGCCCGCCAAATACGCATCCAGAACGGCTTTTCTTTTTTGAAAGAATAAGCTCAGAATGTGAAAAAACAAGGAAATTCTGGCATGAAAAAAAACAACTAAAATTGACATGCGTTTGTGTTATTCCGAAGTGGTCTGCCAACTTGTCCGCGAATTGTTTCAATATAAACTGTTCCTTTTCGAAATGATCCGAAACTTTTTGTTGAATTTCTATCCAATCAGTTTCATTTCTTCGAATCTGAAGAATGGTTTTTTGAGAACAAAAACTCAGTCAAAAAACTCACTCTTCTAGAATTCTTGATTTTAGTGGTCGCGGATTCTTCAGGATTCTGGTTCTCTTTCAAGGGGTTCTCCGAAGGATTTTCATTGGTTCTATGGAGATTTGACATCGGTAAAAAATGATTATTCGCATATATTGAAAAGAAATCTACTATTTGGAGAGTGWAAGAATCGTAAATGATAGAGGTGATGAAACAGTCAAAAATGAATATAACATCTAAAGTAAGAAAGTTGTCAGTGAGATAAAAAAAAAAGATGGAGAGGGAGAGGCACACACGCAGCAAGGGATCACAAATAACTCTCCTTTCAGACTGGCCCACACCATTGTGCGTATCACGGAGAACGGGTATTGATCGGTGCCTACATGCAGACGCTAACTCATCCCGCGCAAATGTTGGTCACATTTGATCTATTATGTAAATTTTAGTCTCGGCAGGCCTAACAAGGGAATGTCGTTCAGAAAGCTCTTCAGAATTTTCTCTAAAATGGCTCATTTATAGAATCGAGTATGGGCTTTTACGTAATAATAGTCTCTACCTGCAAAAATCGCTGAAAATCGAGAAAAATCGATCTGAAATTATAGCATTTCCACCAGTCTCATCGCCTCTCTTCTCCTCCCCTTTCTTCACTGCGTTGCGTGCAAGAGTAAAACACATCTCGGTAGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGATTTTCATTGGTTCTATG</pcr_primer_p1>
		<pcr_primer_p2>GCCAGTCTGAAAGGAGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AAGGATTTTCATTGGTTCTATGGAGATTTGACATCGGTAAAAAATGATTATTCGCATATATTGAAAAGAAATCTACTATTTGGAGAGTGAAAGAATCGTAAATGATAGAGGTGATGAAACAGTCAAAAATGAATATAACATCTAAAGTAAGAAAGTTGTCAGTGAGATAAAAAAAAAAGATGGAGAGGGAGAGGCACACACGCAGCAAGGGATCACAAATAACTCTCCTTTCAGACTGGC</canonical_amplicon>
		<polymorphic_amplicon>AAGGATTTTCATTGGTTCTATGGAGATTTGACATCGGTAAAAAATGATTATTCGCATATATTGAAAAGAAATCTACTATTTGGAGAGTGWAAGAATCGTAAATGATAGAGGTGATGAAACAGTCAAAAATGAATATAACATCTAAAGTAAGAAAGTTGTCAGTGAGATAAAAAAAAAAGATGGAGAGGGAGAGGCACACACGCAGCAAGGGATCACAAATAACTCTCCTTTCAGACTGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29640</snp_id>
        <super_contig>c004801456.Contig1</super_contig>
        <contig_pos>109574</contig_pos>
        <strand></strand>
        <context>GGATCACAAA[T/C]AACTCTCCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAAAAAAAGATGGAGAGGGAGAGGCACACACGCAGCAAGGGATCACAAA</left_flank>
        <right_flank>AACTCTCCTTTCAGACTGGCCCACACCATTGTGCGTATCACGGAGAACGG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCTGGCATGAAAAAAAACAACTAAAATTGACATGCGTTTGTGTTATTCCGAAGTGGTCTGCCAACTTGTCCGCGAATTGTTTCAATATAAACTGTTCCTTTTCGAAATGATCCGAAACTTTTTGTTGAATTTCTATCCAATCAGTTTCATTTCTTCGAATCTGAAGAATGGTTTTTTGAGAACAAAAACTCAGTCAAAAAACTCACTCTTCTAGAATTCTTGATTTTAGTGGTCGCGGATTCTTCAGGATTCTGGTTCTCTTTCAAGGGGTTCTCCGAAGGATTTTCATTGGTTCTATGGAGATTTGACATCGGTAAAAAATGATTATTCGCATATATTGAAAAGAAATCTACTATTTGGAGAGTGAAAGAATCGTAAATGATAGAGGTGATGAAACAGTCAAAAATGAATATAACATCTAAAGTAAGAAAGTTGTCAGTGAGATAAAAAAAAAAGATGGAGAGGGAGAGGCACACACGCAGCAAGGGATCACAAATAACTCTCCTTTCAGACTGGCCCACACCATTGTGCGTATCACGGAGAACGGGTATTGATCGGTGCCTACATGCAGACGCTAACTCATCCCGCGCAAATGTTGGTCACATTTGATCTATTATGTAAATTTTAGTCTCGGCAGGCCTAACAAGGGAATGTCGTTCAGAAAGCTCTTCAGAATTTTCTCTAAAATGGCTCATTTATAGAATCGAGTATGGGCTTTTACGTAATAATAGTCTCTACCTGCAAAAATCGCTGAAAATCGAGAAAAATCGATCTGAAATTATAGCATTTCCACCAGTCTCATCGCCTCTCTTCTCCTCCCCTTTCTTCACTGCGTTGCGTGCAAGAGTAAAACACATCTCGGTAGCCTAGTGGCTAGCAGGGAGGACCACGAATGCACACAAGTAGGTTCGGGTCCTCGTTCTTTTATTTTTATTTTTATTTTTCTTATTTTTTCAAACTTAAAAAGCCGTTTTCGAAAGGTTTGGCAAATGGGAAA</canonical>
            <polymorphic>AATTCTGGCATGAAAAAAAACAACTAAAATTGACATGCGTTTGTGTTATTCCGAAGTGGTCTGCCAACTTGTCCGCGAATTGTTTCAATATAAACTGTTCCTTTTCGAAATGATCCGAAACTTTTTGTTGAATTTCTATCCAATCAGTTTCATTTCTTCGAATCTGAAGAATGGTTTTTTGAGAACAAAAACTCAGTCAAAAAACTCACTCTTCTAGAATTCTTGATTTTAGTGGTCGCGGATTCTTCAGGATTCTGGTTCTCTTTCAAGGGGTTCTCCGAAGGATTTTCATTGGTTCTATGGAGATTTGACATCGGTAAAAAATGATTATTCGCATATATTGAAAAGAAATCTACTATTTGGAGAGTGAAAGAATCGTAAATGATAGAGGTGATGAAACAGTCAAAAATGAATATAACATCTAAAGTAAGAAAGTTGTCAGTGAGATAAAAAAAAAAGATGGAGAGGGAGAGGCACACACGCAGCAAGGGATCACAAAYAACTCTCCTTTCAGACTGGCCCACACCATTGTGCGTATCACGGAGAACGGGTATTGATCGGTGCCTACATGCAGACGCTAACTCATCCCGCGCAAATGTTGGTCACATTTGATCTATTATGTAAATTTTAGTCTCGGCAGGCCTAACAAGGGAATGTCGTTCAGAAAGCTCTTCAGAATTTTCTCTAAAATGGCTCATTTATAGAATCGAGTATGGGCTTTTACGTAATAATAGTCTCTACCTGCAAAAATCGCTGAAAATCGAGAAAAATCGATCTGAAATTATAGCATTTCCACCAGTCTCATCGCCTCTCTTCTCCTCCCCTTTCTTCACTGCGTTGCGTGCAAGAGTAAAACACATCTCGGTAGCCTAGTGGCTAGCAGGGAGGACCACGAATGCACACAAGTAGGTTCGGGTCCTCGTTCTTTTATTTTTATTTTTATTTTTCTTATTTTTTCAAACTTAAAAAGCCGTTTTCGAAAGGTTTGGCAAATGGGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGATGAAACAGTCAAAAATGA</pcr_primer_p1>
		<pcr_primer_p2>CTGCCGAGACTAAAATTTACATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGATGAAACAGTCAAAAATGAATATAACATCTAAAGTAAGAAAGTTGTCAGTGAGATAAAAAAAAAAGATGGAGAGGGAGAGGCACACACGCAGCAAGGGATCACAAATAACTCTCCTTTCAGACTGGCCCACACCATTGTGCGTATCACGGAGAACGGGTATTGATCGGTGCCTACATGCAGACGCTAACTCATCCCGCGCAAATGTTGGTCACATTTGATCTATTATGTAAATTTTAGTCTCGGCAG</canonical_amplicon>
		<polymorphic_amplicon>GTGATGAAACAGTCAAAAATGAATATAACATCTAAAGTAAGAAAGTTGTCAGTGAGATAAAAAAAAAAGATGGAGAGGGAGAGGCACACACGCAGCAAGGGATCACAAAYAACTCTCCTTTCAGACTGGCCCACACCATTGTGCGTATCACGGAGAACGGGTATTGATCGGTGCCTACATGCAGACGCTAACTCATCCCGCGCAAATGTTGGTCACATTTGATCTATTATGTAAATTTTAGTCTCGGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29643</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>18592</contig_pos>
        <strand></strand>
        <context>tagtttttct[A/G]ggtcatgacc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCT</left_flank>
        <right_flank>GGTCATGACCCAGATTTTTCTAGGCCATGACCTAGTTTTTTGTAGGTCAT</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAAACTGGGGCATGACCTAAATTTTTCTGGGTCATGACCTAATTTTTCGAGGTCGTGACTTAATTTTTTCTAGGTCATGACCTTGTTTTTTTTTGGGTCATGACCTAGTTTTTTCTGGGTCATAACCCAGATTTTTCTAGGTCATGACCCAGATTTTTCTAGGTCATGACCCAGATTTTTCTAGGTCATGACCTAATTTTTCATGACCTTTTCAGTCTTGACCTTTTTTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTTATTTTTTTTCTAGGCCATGACCTAATTTTTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAATTTTTCTAGGTCATGACCTTGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAGTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTCTGACCTAATTTTTCAAAAAATTCAAAAAATTGAATTTTTCAATTTTTCAAATTCCCAATAAGCCATTTTTCCAGAATCTACCTCTCCAAACACTGTCTGCCGTCTCCAATCTCTCGTTATGCACTCATTTTGACGGGTTTTTTGGTCCATATTCATATGAGCAGGTAGCAATTTTGATTTTGAAATTTGTCTAGGCCATTTAATGTGGTGGCCTAAAAAAATCATGTAGAGAAAGTTAGGCCACCATGTTAAAATGGCATAGAAAACCCACAAGACGAATATTAGGCTATTTTTAGTTCATTTACTACGGTGGCCTAGAAAACTCGATTTGCGAAAGTTAGACCATCGTGTTGAAATTTTTGAAAATTAAAAAAAGTAAAATTCTAGAAGTTATAGGAACTTCTGAAAATCAAA</canonical>
            <polymorphic>AAAAAAAACTGGGGCATGACCTAAATTTTTCTGGGTCATGACCTAATTTTTCGAGGTCGTGACTTAATTTTTTCTAGGTCATGACCTTGTTTTTTTTTGGGTCATGACCTAGTTTTTTCTGGGTCATAACCCAGATTTTTCTAGGTCATGACCCAGATTTTTCTAGGTCATGACCCAGATTTTTCTAGGTCATGACCTAATTTTTCATGACCTTTTCAGTCTTGACCTTTTTTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTTATTTTTTTTCTAGGCCATGACCTAATTTTTTCTAGGTCGTGACCTAGTTTTTCTRGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAATTTTTCTAGGTCATGACCTTGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAGTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTCTGACCTAATTTTTCAAAAAATTCAAAAAATTGAATTTTTCAATTTTTCAAATTCCCAATAAGCCATTTTTCCAGAATCTACCTCTCCAAACACTGTCTGCCGTCTCCAATCTCTCGTTATGCACTCATTTTGACGGGTTTTTTGGTCCATATTCATATGAGCAGGTAGCAATTTTGATTTTGAAATTTGTCTAGGCCATTTAATGTGGTGGCCTAAAAAAATCATGTAGAGAAAGTTAGGCCACCATGTTAAAATGGCATAGAAAACCCACAAGACGAATATTAGGCTATTTTTAGTTCATTTACTACGGTGGCCTAGAAAACTCGATTTGCGAAAGTTAGACCATCGTGTTGAAATTTTTGAAAATTAAAAAAAGTAAAATTCTAGAAGTTATAGGAACTTCTGAAAATCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>201 124 120 74 69 44 35 32 30 22 22 22 22 22 21 21 12 12 12 12 12 12 10 10 9 9 9</canonical_bands>
                <polymorphic_bands>201 124 120 74 69 44 35 32 30 22 22 22 22 22 21 21 21 12 12 12 12 12 10 10 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGTTTAGGGTGAGCAATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAAAAATTAGGTCAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>629</pcr_amplicon_size>
		<canonical_amplicon>TAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAGTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTCTGACCTAATTTTTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAGTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTCTGACCTAATTTTTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29644</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>18603</contig_pos>
        <strand></strand>
        <context>ggtcatgacc[C/T]aratttttct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACC</left_flank>
        <right_flank>AGATTTTTCTAGGCCATGACCTAGTTTTTTGTAGGTCATGACCTAATTTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGCATGACCTAAATTTTTCTGGGTCATGACCTAATTTTTCGAGGTCGTGACTTAATTTTTTCTAGGTCATGACCTTGTTTTTTTTTGGGTCATGACCTAGTTTTTTCTGGGTCATAACCCAGATTTTTCTAGGTCATGACCCAGATTTTTCTAGGTCATGACCCAGATTTTTCTAGGTCATGACCTAATTTTTCATGACCTTTTCAGTCTTGACCTTTTTTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTTATTTTTTTTCTAGGCCATGACCTAATTTTTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAATTTTTCTAGGTCATGACCTTGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAGTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTCTGACCTAATTTTTCAAAAAATTCAAAAAATTGAATTTTTCAATTTTTCAAATTCCCAATAAGCCATTTTTCCAGAATCTACCTCTCCAAACACTGTCTGCCGTCTCCAATCTCTCGTTATGCACTCATTTTGACGGGTTTTTTGGTCCATATTCATATGAGCAGGTAGCAATTTTGATTTTGAAATTTGTCTAGGCCATTTAATGTGGTGGCCTAAAAAAATCATGTAGAGAAAGTTAGGCCACCATGTTAAAATGGCATAGAAAACCCACAAGACGAATATTAGGCTATTTTTAGTTCATTTACTACGGTGGCCTAGAAAACTCGATTTGCGAAAGTTAGACCATCGTGTTGAAATTTTTGAAAATTAAAAAAAGTAAAATTCTAGAAGTTATAGGAACTTCTGAAAATCAAAATTTTTGAATT</canonical>
            <polymorphic>GGGCATGACCTAAATTTTTCTGGGTCATGACCTAATTTTTCGAGGTCGTGACTTAATTTTTTCTAGGTCATGACCTTGTTTTTTTTTGGGTCATGACCTAGTTTTTTCTGGGTCATAACCCAGATTTTTCTAGGTCATGACCYAGATTTTTCTAGGTCATGACCCAGATTTTTCTAGGTCATGACCTAATTTTTCATGACCTTTTCAGTCTTGACCTTTTTTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTTATTTTTTTTCTAGGCCATGACCTAATTTTTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAATTTTTCTAGGTCATGACCTTGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAGTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTCTGACCTAATTTTTCAAAAAATTCAAAAAATTGAATTTTTCAATTTTTCAAATTCCCAATAAGCCATTTTTCCAGAATCTACCTCTCCAAACACTGTCTGCCGTCTCCAATCTCTCGTTATGCACTCATTTTGACGGGTTTTTTGGTCCATATTCATATGAGCAGGTAGCAATTTTGATTTTGAAATTTGTCTAGGCCATTTAATGTGGTGGCCTAAAAAAATCATGTAGAGAAAGTTAGGCCACCATGTTAAAATGGCATAGAAAACCCACAAGACGAATATTAGGCTATTTTTAGTTCATTTACTACGGTGGCCTAGAAAACTCGATTTGCGAAAGTTAGACCATCGTGTTGAAATTTTTGAAAATTAAAAAAAGTAAAATTCTAGAAGTTATAGGAACTTCTGAAAATCAAAATTTTTGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGTTTAGGGTGAGCAATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAAAAATTAGGTCAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>629</pcr_amplicon_size>
		<canonical_amplicon>CCAGATTTTTCTAGGCCATGACCTAGTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTCTGACCTAATTTTTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>CCAGATTTTTCTAGGCCATGACCTAGTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTCTGACCTAATTTTTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29645</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>18605</contig_pos>
        <strand></strand>
        <context>tcatgaccya[G/A]atttttctrg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCA</left_flank>
        <right_flank>ATTTTTCTAGGCCATGACCTAGTTTTTTGTAGGTCATGACCTAATTTTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATGACCTAAATTTTTCTGGGTCATGACCTAATTTTTCGAGGTCGTGACTTAATTTTTTCTAGGTCATGACCTTGTTTTTTTTTGGGTCATGACCTAGTTTTTTCTGGGTCATAACCCAGATTTTTCTAGGTCATGACCCAGATTTTTCTAGGTCATGACCCAGATTTTTCTAGGTCATGACCTAATTTTTCATGACCTTTTCAGTCTTGACCTTTTTTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTTATTTTTTTTCTAGGCCATGACCTAATTTTTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAATTTTTCTAGGTCATGACCTTGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAGTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTCTGACCTAATTTTTCAAAAAATTCAAAAAATTGAATTTTTCAATTTTTCAAATTCCCAATAAGCCATTTTTCCAGAATCTACCTCTCCAAACACTGTCTGCCGTCTCCAATCTCTCGTTATGCACTCATTTTGACGGGTTTTTTGGTCCATATTCATATGAGCAGGTAGCAATTTTGATTTTGAAATTTGTCTAGGCCATTTAATGTGGTGGCCTAAAAAAATCATGTAGAGAAAGTTAGGCCACCATGTTAAAATGGCATAGAAAACCCACAAGACGAATATTAGGCTATTTTTAGTTCATTTACTACGGTGGCCTAGAAAACTCGATTTGCGAAAGTTAGACCATCGTGTTGAAATTTTTGAAAATTAAAAAAAGTAAAATTCTAGAAGTTATAGGAACTTCTGAAAATCAAAATTTTTGAATTTC</canonical>
            <polymorphic>GCATGACCTAAATTTTTCTGGGTCATGACCTAATTTTTCGAGGTCGTGACTTAATTTTTTCTAGGTCATGACCTTGTTTTTTTTTGGGTCATGACCTAGTTTTTTCTGGGTCATAACCCAGATTTTTCTAGGTCATGACCCARATTTTTCTAGGTCATGACCCAGATTTTTCTAGGTCATGACCTAATTTTTCATGACCTTTTCAGTCTTGACCTTTTTTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTTATTTTTTTTCTAGGCCATGACCTAATTTTTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAATTTTTCTAGGTCATGACCTTGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAGTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTCTGACCTAATTTTTCAAAAAATTCAAAAAATTGAATTTTTCAATTTTTCAAATTCCCAATAAGCCATTTTTCCAGAATCTACCTCTCCAAACACTGTCTGCCGTCTCCAATCTCTCGTTATGCACTCATTTTGACGGGTTTTTTGGTCCATATTCATATGAGCAGGTAGCAATTTTGATTTTGAAATTTGTCTAGGCCATTTAATGTGGTGGCCTAAAAAAATCATGTAGAGAAAGTTAGGCCACCATGTTAAAATGGCATAGAAAACCCACAAGACGAATATTAGGCTATTTTTAGTTCATTTACTACGGTGGCCTAGAAAACTCGATTTGCGAAAGTTAGACCATCGTGTTGAAATTTTTGAAAATTAAAAAAAGTAAAATTCTAGAAGTTATAGGAACTTCTGAAAATCAAAATTTTTGAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGTTTAGGGTGAGCAATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAAAAATTAGGTCAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>629</pcr_amplicon_size>
		<canonical_amplicon>AGATTTTTCTAGGCCATGACCTAGTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTCTGACCTAATTTTTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>AGATTTTTCTAGGCCATGACCTAGTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTCTGACCTAATTTTTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29646</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>18614</contig_pos>
        <strand></strand>
        <context>aratttttct[A/G]ggycatgacc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCT</left_flank>
        <right_flank>GGCCATGACCTAGTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTTTCTGGGTCATGACCTAATTTTTCGAGGTCGTGACTTAATTTTTTCTAGGTCATGACCTTGTTTTTTTTTGGGTCATGACCTAGTTTTTTCTGGGTCATAACCCAGATTTTTCTAGGTCATGACCCAGATTTTTCTAGGTCATGACCCAGATTTTTCTAGGTCATGACCTAATTTTTCATGACCTTTTCAGTCTTGACCTTTTTTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTTATTTTTTTTCTAGGCCATGACCTAATTTTTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAATTTTTCTAGGTCATGACCTTGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAGTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTCTGACCTAATTTTTCAAAAAATTCAAAAAATTGAATTTTTCAATTTTTCAAATTCCCAATAAGCCATTTTTCCAGAATCTACCTCTCCAAACACTGTCTGCCGTCTCCAATCTCTCGTTATGCACTCATTTTGACGGGTTTTTTGGTCCATATTCATATGAGCAGGTAGCAATTTTGATTTTGAAATTTGTCTAGGCCATTTAATGTGGTGGCCTAAAAAAATCATGTAGAGAAAGTTAGGCCACCATGTTAAAATGGCATAGAAAACCCACAAGACGAATATTAGGCTATTTTTAGTTCATTTACTACGGTGGCCTAGAAAACTCGATTTGCGAAAGTTAGACCATCGTGTTGAAATTTTTGAAAATTAAAAAAAGTAAAATTCTAGAAGTTATAGGAACTTCTGAAAATCAAAATTTTTGAATTTCCCGCCAAAT</canonical>
            <polymorphic>AAATTTTTCTGGGTCATGACCTAATTTTTCGAGGTCGTGACTTAATTTTTTCTAGGTCATGACCTTGTTTTTTTTTGGGTCATGACCTAGTTTTTTCTGGGTCATAACCCAGATTTTTCTAGGTCATGACCCAGATTTTTCTAGGTCATGACCCAGATTTTTCTAGGTCATGACCTAATTTTTCATGACCTTTTCAGTCTTGACCTTTTTTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTTATTTTTTTTCTAGGCCATGACCTAATTTTTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTRGGCCATGACCTAATTTTTCTAGGTCATGACCTTGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAGTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTCTGACCTAATTTTTCAAAAAATTCAAAAAATTGAATTTTTCAATTTTTCAAATTCCCAATAAGCCATTTTTCCAGAATCTACCTCTCCAAACACTGTCTGCCGTCTCCAATCTCTCGTTATGCACTCATTTTGACGGGTTTTTTGGTCCATATTCATATGAGCAGGTAGCAATTTTGATTTTGAAATTTGTCTAGGCCATTTAATGTGGTGGCCTAAAAAAATCATGTAGAGAAAGTTAGGCCACCATGTTAAAATGGCATAGAAAACCCACAAGACGAATATTAGGCTATTTTTAGTTCATTTACTACGGTGGCCTAGAAAACTCGATTTGCGAAAGTTAGACCATCGTGTTGAAATTTTTGAAAATTAAAAAAAGTAAAATTCTAGAAGTTATAGGAACTTCTGAAAATCAAAATTTTTGAATTTCCCGCCAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>201 124 120 69 52 52 44 35 32 22 22 22 22 22 21 21 12 12 12 12 12 12 10 10 9 9 9</canonical_bands>
                <polymorphic_bands>201 124 120 69 52 52 44 43 35 32 22 22 22 22 21 12 12 12 12 12 12 10 10 9 9 9</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>287 257 123 108 107 73 29 16</canonical_bands>
                <polymorphic_bands>287 257 215 123 73 29 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGTTTAGGGTGAGCAATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAAAAATTAGGTCAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>629</pcr_amplicon_size>
		<canonical_amplicon>TAGGCCATGACCTAGTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTCTGACCTAATTTTTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TAGGCCATGACCTAGTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTCTGACCTAATTTTTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29647</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>18617</contig_pos>
        <strand></strand>
        <context>tttttctrgg[C/T]catgaccyag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGG</left_flank>
        <right_flank>CATGACCTAGTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGAC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTCTGGGTCATGACCTAATTTTTCGAGGTCGTGACTTAATTTTTTCTAGGTCATGACCTTGTTTTTTTTTGGGTCATGACCTAGTTTTTTCTGGGTCATAACCCAGATTTTTCTAGGTCATGACCCAGATTTTTCTAGGTCATGACCCAGATTTTTCTAGGTCATGACCTAATTTTTCATGACCTTTTCAGTCTTGACCTTTTTTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTTATTTTTTTTCTAGGCCATGACCTAATTTTTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAATTTTTCTAGGTCATGACCTTGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAGTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTCTGACCTAATTTTTCAAAAAATTCAAAAAATTGAATTTTTCAATTTTTCAAATTCCCAATAAGCCATTTTTCCAGAATCTACCTCTCCAAACACTGTCTGCCGTCTCCAATCTCTCGTTATGCACTCATTTTGACGGGTTTTTTGGTCCATATTCATATGAGCAGGTAGCAATTTTGATTTTGAAATTTGTCTAGGCCATTTAATGTGGTGGCCTAAAAAAATCATGTAGAGAAAGTTAGGCCACCATGTTAAAATGGCATAGAAAACCCACAAGACGAATATTAGGCTATTTTTAGTTCATTTACTACGGTGGCCTAGAAAACTCGATTTGCGAAAGTTAGACCATCGTGTTGAAATTTTTGAAAATTAAAAAAAGTAAAATTCTAGAAGTTATAGGAACTTCTGAAAATCAAAATTTTTGAATTTCCCGCCAAATCTA</canonical>
            <polymorphic>TTTTTCTGGGTCATGACCTAATTTTTCGAGGTCGTGACTTAATTTTTTCTAGGTCATGACCTTGTTTTTTTTTGGGTCATGACCTAGTTTTTTCTGGGTCATAACCCAGATTTTTCTAGGTCATGACCCAGATTTTTCTAGGTCATGACCCAGATTTTTCTAGGTCATGACCTAATTTTTCATGACCTTTTCAGTCTTGACCTTTTTTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTTATTTTTTTTCTAGGCCATGACCTAATTTTTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAATTTTTCTAGGTCATGACCTTGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGYCATGACCTAGTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTCTGACCTAATTTTTCAAAAAATTCAAAAAATTGAATTTTTCAATTTTTCAAATTCCCAATAAGCCATTTTTCCAGAATCTACCTCTCCAAACACTGTCTGCCGTCTCCAATCTCTCGTTATGCACTCATTTTGACGGGTTTTTTGGTCCATATTCATATGAGCAGGTAGCAATTTTGATTTTGAAATTTGTCTAGGCCATTTAATGTGGTGGCCTAAAAAAATCATGTAGAGAAAGTTAGGCCACCATGTTAAAATGGCATAGAAAACCCACAAGACGAATATTAGGCTATTTTTAGTTCATTTACTACGGTGGCCTAGAAAACTCGATTTGCGAAAGTTAGACCATCGTGTTGAAATTTTTGAAAATTAAAAAAAGTAAAATTCTAGAAGTTATAGGAACTTCTGAAAATCAAAATTTTTGAATTTCCCGCCAAATCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>284 257 126 108 107 73 29 16</canonical_bands>
                <polymorphic_bands>364 284 126 108 73 29 16</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>284 133 126 124 108 107 46 29 27 16</canonical_bands>
                <polymorphic_bands>284 231 133 126 108 46 29 27 16</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>284 257 126 108 107 73 29 16</canonical_bands>
                <polymorphic_bands>364 284 126 108 73 29 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGTTTAGGGTGAGCAATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAAAAATTAGGTCAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>629</pcr_amplicon_size>
		<canonical_amplicon>GCCATGACCTAGTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTCTGACCTAATTTTTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>GYCATGACCTAGTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTCTGACCTAATTTTTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29648</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>18625</contig_pos>
        <strand></strand>
        <context>ggycatgacc[T/C]agwtttttgt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACC</left_flank>
        <right_flank>AGTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTCATGACCTAATTTTTCGAGGTCGTGACTTAATTTTTTCTAGGTCATGACCTTGTTTTTTTTTGGGTCATGACCTAGTTTTTTCTGGGTCATAACCCAGATTTTTCTAGGTCATGACCCAGATTTTTCTAGGTCATGACCCAGATTTTTCTAGGTCATGACCTAATTTTTCATGACCTTTTCAGTCTTGACCTTTTTTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTTATTTTTTTTCTAGGCCATGACCTAATTTTTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAATTTTTCTAGGTCATGACCTTGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAGTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTCTGACCTAATTTTTCAAAAAATTCAAAAAATTGAATTTTTCAATTTTTCAAATTCCCAATAAGCCATTTTTCCAGAATCTACCTCTCCAAACACTGTCTGCCGTCTCCAATCTCTCGTTATGCACTCATTTTGACGGGTTTTTTGGTCCATATTCATATGAGCAGGTAGCAATTTTGATTTTGAAATTTGTCTAGGCCATTTAATGTGGTGGCCTAAAAAAATCATGTAGAGAAAGTTAGGCCACCATGTTAAAATGGCATAGAAAACCCACAAGACGAATATTAGGCTATTTTTAGTTCATTTACTACGGTGGCCTAGAAAACTCGATTTGCGAAAGTTAGACCATCGTGTTGAAATTTTTGAAAATTAAAAAAAGTAAAATTCTAGAAGTTATAGGAACTTCTGAAAATCAAAATTTTTGAATTTCCCGCCAAATCTAAAACCTCT</canonical>
            <polymorphic>GGTCATGACCTAATTTTTCGAGGTCGTGACTTAATTTTTTCTAGGTCATGACCTTGTTTTTTTTTGGGTCATGACCTAGTTTTTTCTGGGTCATAACCCAGATTTTTCTAGGTCATGACCCAGATTTTTCTAGGTCATGACCCAGATTTTTCTAGGTCATGACCTAATTTTTCATGACCTTTTCAGTCTTGACCTTTTTTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTTATTTTTTTTCTAGGCCATGACCTAATTTTTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAATTTTTCTAGGTCATGACCTTGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCYAGTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTCTGACCTAATTTTTCAAAAAATTCAAAAAATTGAATTTTTCAATTTTTCAAATTCCCAATAAGCCATTTTTCCAGAATCTACCTCTCCAAACACTGTCTGCCGTCTCCAATCTCTCGTTATGCACTCATTTTGACGGGTTTTTTGGTCCATATTCATATGAGCAGGTAGCAATTTTGATTTTGAAATTTGTCTAGGCCATTTAATGTGGTGGCCTAAAAAAATCATGTAGAGAAAGTTAGGCCACCATGTTAAAATGGCATAGAAAACCCACAAGACGAATATTAGGCTATTTTTAGTTCATTTACTACGGTGGCCTAGAAAACTCGATTTGCGAAAGTTAGACCATCGTGTTGAAATTTTTGAAAATTAAAAAAAGTAAAATTCTAGAAGTTATAGGAACTTCTGAAAATCAAAATTTTTGAATTTCCCGCCAAATCTAAAACCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>201 124 120 69 63 44 41 35 32 22 22 22 22 22 21 21 12 12 12 12 12 12 10 10 9 9 9</canonical_bands>
                <polymorphic_bands>201 124 120 69 63 56 41 35 32 22 22 22 22 22 21 21 12 12 12 12 12 10 10 9 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGTTTAGGGTGAGCAATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAAAAATTAGGTCAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>629</pcr_amplicon_size>
		<canonical_amplicon>CTAGTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTCTGACCTAATTTTTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>CYAGTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTCTGACCTAATTTTTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29649</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>18628</contig_pos>
        <strand></strand>
        <context>catgaccyag[T/A]tttttgtagg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAG</left_flank>
        <right_flank>TTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGACCTAATTTTTCGAGGTCGTGACTTAATTTTTTCTAGGTCATGACCTTGTTTTTTTTTGGGTCATGACCTAGTTTTTTCTGGGTCATAACCCAGATTTTTCTAGGTCATGACCCAGATTTTTCTAGGTCATGACCCAGATTTTTCTAGGTCATGACCTAATTTTTCATGACCTTTTCAGTCTTGACCTTTTTTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTTATTTTTTTTCTAGGCCATGACCTAATTTTTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAATTTTTCTAGGTCATGACCTTGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAGTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTCTGACCTAATTTTTCAAAAAATTCAAAAAATTGAATTTTTCAATTTTTCAAATTCCCAATAAGCCATTTTTCCAGAATCTACCTCTCCAAACACTGTCTGCCGTCTCCAATCTCTCGTTATGCACTCATTTTGACGGGTTTTTTGGTCCATATTCATATGAGCAGGTAGCAATTTTGATTTTGAAATTTGTCTAGGCCATTTAATGTGGTGGCCTAAAAAAATCATGTAGAGAAAGTTAGGCCACCATGTTAAAATGGCATAGAAAACCCACAAGACGAATATTAGGCTATTTTTAGTTCATTTACTACGGTGGCCTAGAAAACTCGATTTGCGAAAGTTAGACCATCGTGTTGAAATTTTTGAAAATTAAAAAAAGTAAAATTCTAGAAGTTATAGGAACTTCTGAAAATCAAAATTTTTGAATTTCCCGCCAAATCTAAAACCTCTAAA</canonical>
            <polymorphic>CATGACCTAATTTTTCGAGGTCGTGACTTAATTTTTTCTAGGTCATGACCTTGTTTTTTTTTGGGTCATGACCTAGTTTTTTCTGGGTCATAACCCAGATTTTTCTAGGTCATGACCCAGATTTTTCTAGGTCATGACCCAGATTTTTCTAGGTCATGACCTAATTTTTCATGACCTTTTCAGTCTTGACCTTTTTTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTAAATTTTTCTGGGTCATGACCTTATTTTTTTTCTAGGCCATGACCTAATTTTTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAATTTTTCTAGGTCATGACCTTGTTTTTCTAGGTCATGACCTAGTTTGTTCTAGGTCGTGACCTAGTTTTTCTAGGTCATGACCCAGATTTTTCTAGGCCATGACCTAGWTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTCTGACCTAATTTTTCAAAAAATTCAAAAAATTGAATTTTTCAATTTTTCAAATTCCCAATAAGCCATTTTTCCAGAATCTACCTCTCCAAACACTGTCTGCCGTCTCCAATCTCTCGTTATGCACTCATTTTGACGGGTTTTTTGGTCCATATTCATATGAGCAGGTAGCAATTTTGATTTTGAAATTTGTCTAGGCCATTTAATGTGGTGGCCTAAAAAAATCATGTAGAGAAAGTTAGGCCACCATGTTAAAATGGCATAGAAAACCCACAAGACGAATATTAGGCTATTTTTAGTTCATTTACTACGGTGGCCTAGAAAACTCGATTTGCGAAAGTTAGACCATCGTGTTGAAATTTTTGAAAATTAAAAAAAGTAAAATTCTAGAAGTTATAGGAACTTCTGAAAATCAAAATTTTTGAATTTCCCGCCAAATCTAAAACCTCTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGTTTAGGGTGAGCAATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAAAAATTAGGTCAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>629</pcr_amplicon_size>
		<canonical_amplicon>GTTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTCTGACCTAATTTTTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>GWTTTTTGTAGGTCATGACCTAATTTTTTCTACGTCGTGACCTAGATTTTTCTGACCTAATTTTTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29650</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>67783</contig_pos>
        <strand></strand>
        <context>gccacggcgg[C/T]cggctttgac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGACCATAGCAACATGATTATATGGACAATCAAGGCTGTGCCACGGCGG</left_flank>
        <right_flank>CGGCTTTGACTAGGCCTGAGAAAGCCGCGGCCTCAGACGCCTTAAGACGA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTCTGGAAAAAACTCTAAAGTTTTAATTAATTTTTTTTCTATTTTTGAAAAAAGTATGGTGGATAGATTATGAAAATAATGAAGATTTCGTAATTCTGGTCATTTTGAAACACTTTTTTTCGGAAAATTCATAATTTTTCGAAAAAAATTTGAAAAGTTGCGGAAAATTAAAAAAAAAAGATTTTGAAATTCGAAAAATTCTGAAAAAATGGAATGGATGTCTAACCAGAAAAATAATACCACAACAACCTAATATTCATGACCTGAAGCTGATTTTTTGTTCTGAAATTCCTAAATGTTTCAAAATTTTTAACTTGCAAATAAAAATTTTTAAAAACGATTAAAGTTTTGAAAAAAGTTGATTTTAATAGATTTTTTTTTAAAGCCCACAGTATCAAATTTTCAATTTTTTTCAGAAAAACATTGTTTGAAAATTGTAACAAAATTTGGACCATAGCAACATGATTATATGGACAATCAAGGCTGTGCCACGGCGGCCGGCTTTGACTAGGCCTGAGAAAGCCGCGGCCTCAGACGCCTTAAGACGAAAAGCATCGGCCGGCCGCGGCTTTCTCGGCTTTGGATTGAAAAGCCGCGGCCGGCAGCCACTTTGCACAGCCTTGCGGACAATGAACATTTTTGTATTATAGACATTTTGGATTACTTTTTTTGCGAAAATTTTTAATTTTCAAAAAAGGTATAACTTGAAAAAAATCAAAGGACGAACCAGTAAAAAACTGGATTGAATCGCGCCGAAGGCGCACCATCTTGCTGGTTAAATATAACAATGTTGGTTTATGTATTTATTATTAAAATCTGAATTTTTATTTCTGGATTGTATTTTTTTTTCAAAAATCCTTCTAAAAAAGGTGATTTTTGAAAAAAAAAATCATTCAACAACTTCGTGGATCGGAAACACAATACTACAACATCCTAATACCCATATTCTGAAACAGGTTTTTTCAGGATTTTTGGAATTTCATGAAGTTCTGAGAAGA</canonical>
            <polymorphic>AATTCTGGAAAAAACTCTAAAGTTTTAATTAATTTTTTTTCTATTTTTGAAAAAAGTATGGTGGATAGATTATGAAAATAATGAAGATTTCGTAATTCTGGTCATTTTGAAACACTTTTTTTCGGAAAATTCATAATTTTTCGAAAAAAATTTGAAAAGTTGCGGAAAATTAAAAAAAAAAGATTTTGAAATTCGAAAAATTCTGAAAAAATGGAATGGATGTCTAACCAGAAAAATAATACCACAACAACCTAATATTCATGACCTGAAGCTGATTTTTTGTTCTGAAATTCCTAAATGTTTCAAAATTTTTAACTTGCAAATAAAAATTTTTAAAAACGATTAAAGTTTTGAAAAAAGTTGATTTTAATAGATTTTTTTTTAAAGCCCACAGTATCAAATTTTCAATTTTTTTCAGAAAAACATTGTTTGAAAATTGTAACAAAATTTGGACCATAGCAACATGATTATATGGACAATCAAGGCTGTGCCACGGCGGYCGGCTTTGACTAGGCCTGAGAAAGCCGCGGCCTCAGACGCCTTAAGACGAAAAGCATCGGCCGGCCGCGGCTTTCTCGGCTTTGGATTGAAAAGCCGCGGCCGGCAGCCACTTTGCACAGCCTTGCGGACAATGAACATTTTTGTATTATAGACATTTTGGATTACTTTTTTTGCGAAAATTTTTAATTTTCAAAAAAGGTATAACTTGAAAAAAATCAAAGGACGAACCAGTAAAAAACTGGATTGAATCGCGCCGAAGGCGCACCATCTTGCTGGTTAAATATAACAATGTTGGTTTATGTATTTATTATTAAAATCTGAATTTTTATTTCTGGATTGTATTTTTTTTTCAAAAATCCTTCTAAAAAAGGTGATTTTTGAAAAAAAAAATCATTCAACAACTTCGTGGATCGGAAACACAATACTACAACATCCTAATACCCATATTCTGAAACAGGTTTTTTCAGGATTTTTGGAATTTCATGAAGTTCTGAGAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCCNNNNNGGC</site>
                <isoschizomers>
                    <enzyme>BglI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>500 399 61 36 4</canonical_bands>
                <polymorphic_bands>561 399 36 4</polymorphic_bands>
            </assay>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>499 400 61 40</canonical_bands>
                <polymorphic_bands>560 400 40</polymorphic_bands>
            </assay>
            <assay>
                <site>CGGCCG</site>
                <isoschizomers>
                    <enzyme>BseX3I</enzyme>
                    <enzyme>BstZI</enzyme>
                    <enzyme>EagI</enzyme>
                    <enzyme>EclXI</enzyme>
                    <enzyme>Eco52I</enzyme>
                    <enzyme>XmaIII</enzyme>
                </isoschizomers>
                <canonical_bands>497 402 61 36 4</canonical_bands>
                <polymorphic_bands>558 402 36 4</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>499 400 36 30 16 15 4</canonical_bands>
                <polymorphic_bands>514 400 36 30 16 4</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 399 61 40</canonical_bands>
                <polymorphic_bands>561 399 40</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 398 61 40</canonical_bands>
                <polymorphic_bands>562 398 40</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>496 242 182 40 40</canonical_bands>
                <polymorphic_bands>536 242 182 40</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>499 393 40 30 28 10</canonical_bands>
                <polymorphic_bands>527 393 40 30 10</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>497 402 61 36 4</canonical_bands>
                <polymorphic_bands>558 402 36 4</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>380 271 116 98 30 15 14 13 11 10 9 7 6 6 6 4 4</canonical_bands>
                <polymorphic_bands>380 271 116 98 30 18 15 13 11 10 9 7 6 6 6 4</polymorphic_bands>
            </assay>
            <assay>
                <site>GCCGGC</site>
                <isoschizomers>
                    <enzyme>MroNI</enzyme>
                    <enzyme>NaeI</enzyme>
                    <enzyme>NgoAIV</enzyme>
                    <enzyme>NgoMIV</enzyme>
                    <enzyme>PdiI</enzyme>
                </isoschizomers>
                <canonical_bands>499 400 61 40</canonical_bands>
                <polymorphic_bands>560 400 40</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>499 403 40 30 28</canonical_bands>
                <polymorphic_bands>527 403 40 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAACAAAATTTGGACCATAGC</pcr_primer_p1>
		<pcr_primer_p2>TCCAAAATGTCTATAATACAAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>224</pcr_amplicon_size>
		<canonical_amplicon>GTAACAAAATTTGGACCATAGCAACATGATTATATGGACAATCAAGGCTGTGCCACGGCGGCCGGCTTTGACTAGGCCTGAGAAAGCCGCGGCCTCAGACGCCTTAAGACGAAAAGCATCGGCCGGCCGCGGCTTTCTCGGCTTTGGATTGAAAAGCCGCGGCCGGCAGCCACTTTGCACAGCCTTGCGGACAATGAACATTTTTGTATTATAGACATTTTGGA</canonical_amplicon>
		<polymorphic_amplicon>GTAACAAAATTTGGACCATAGCAACATGATTATATGGACAATCAAGGCTGTGCCACGGCGGYCGGCTTTGACTAGGCCTGAGAAAGCCGCGGCCTCAGACGCCTTAAGACGAAAAGCATCGGCCGGCCGCGGCTTTCTCGGCTTTGGATTGAAAAGCCGCGGCCGGCAGCCACTTTGCACAGCCTTGCGGACAATGAACATTTTTGTATTATAGACATTTTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29651</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>71252</contig_pos>
        <strand>+</strand>
        <context>TCCTCCACAA[A/G]TTCTGACACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGACAGCGGCTCGAGCCTCAATCCTCACAGACTCTCCTCCTCCACAA</left_flank>
        <right_flank>TTCTGACACGTCAGCTGCGGGTTGGGCGGCAATTTGAAATTTCCAGGGAA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGTGTGTATTGTTCTGAAAATTCAGTTATAAAGGGGTGAACGAAAATCGTTTTATTATTATTTTTTTTGAAATTCTTGAAAAATTAGTAAGGGTTTTGAAACATTGACGTTTTTCTTTTTTTTTGAAATTTCAAAAATTCAAATTTTGAACTTTTTAAAAATTTAGCTTTTTTGGAGAAATTTCAATATACCTATTCAAGATTTTTCAAAAGTACAGTAGCCTTTTTAAATCAGTTTCAATATTTAAAATTTTGTAATGTTTCAACATCTTCATTTATTCTGTATTAATGCTTAAGTGAAATTCGTCGTTCTGTACAACTGCGCTCTATTTGTAATCTGGCCGAACTTTTCCAATTTCCAAATTTCTAGGCCACCTTGAACAAAAAAGTTTCCAGATGCTTCTACGATCATCATCTCTACTGGGCTCCCTGCTCCTAGTATGCGCCGTTTTGACAGCGGCTCGAGCCTCAATCCTCACAGACTCTCCTCCTCCACAAATTCTGACACGTCAGCTGCGGGTTGGGCGGCAATTTGAAATTTCCAGGGAAATACAAATTTCAGCATTTTCAGAGTTTTCCGTACTCGGTCTCGTTCTACCGTATGCTGGGACACGATCGTCAGTTGCGGCCGTATTATGGTGTCAATGATGAGGTCAGTTGTTGGTCGAGGTGTGAGCAAGGTATGGGCAAGATATGGACAAGACCTTATCCTTGGCCTTGTCCGTGTCCTTGCCTTGGACCGCTCTTGGACCGCCCTTGGTTCGCCCTTGGCTCGCCCTTGGACCACCCTTGGACTGCCCCTTGGACCGCCCTTAGACCGTACTTGGACCGCCCGTGGCTCGCCCTTGGACCGCCCCTGGGCAAGCTATGGGCAAATCATGAGCAATATTTCTTTGCCCATGTCTTGATCAAGCATTGGCCCTAGGCTTAGGTTGTGAACAAGATATGGGTATGACCTTGCCCTTGTCTTGCCTTGCCCTTTCCTTGCCCAACTAAAAG</canonical>
            <polymorphic>AATGTGTGTATTGTTCTGAAAATTCAGTTATAAAGGGGTGAACGAAAATCGTTTTATTATTATTTTTTTTGAAATTCTTGAAAAATTAGTAAGGGTTTTGAAACATTGACGTTTTTCTTTTTTTTTGAAATTTCAAAAATTCAAATTTTGAACTTTTTAAAAATTTAGCTTTTTTGGAGAAATTTCAATATACCTATTCAAGATTTTTCAAAAGTACAGTAGCCTTTTTAAATCAGTTTCAATATTTAAAATTTTGTAATGTTTCAACATCTTCATTTATTCTGTATTAATGCTTAAGTGAAATTCGTCGTTCTGTACAACTGCGCTCTATTTGTAATCTGGCCGAACTTTTCCAATTTCCAAATTTCTAGGCCACCTTGAACAAAAAAGTTTCCAGATGCTTCTACGATCATCATCTCTACTGGGCTCCCTGCTCCTAGTATGCGCCGTTTTGACAGCGGCTCGAGCCTCAATCCTCACAGACTCTCCTCCTCCACAARTTCTGACACGTCAGCTGCGGGTTGGGCGGCAATTTGAAATTTCCAGGGAAATACAAATTTCAGCATTTTCAGAGTTTTCCGTACTCGGTCTCGTTCTACCGTATGCTGGGACACGATCGTCAGTTGCGGCCGTATTATGGTGTCAATGATGAGGTCAGTTGTTGGTCGAGGTGTGAGCAAGGTATGGGCAAGATATGGACAAGACCTTATCCTTGGCCTTGTCCGTGTCCTTGCCTTGGACCGCTCTTGGACCGCCCTTGGTTCGCCCTTGGCTCGCCCTTGGACCACCCTTGGACTGCCCCTTGGACCGCCCTTAGACCGTACTTGGACCGCCCGTGGCTCGCCCTTGGACCGCCCCTGGGCAAGCTATGGGCAAATCATGAGCAATATTTCTTTGCCCATGTCTTGATCAAGCATTGGCCCTAGGCTTAGGTTGTGAACAAGATATGGGTATGACCTTGCCCTTGTCTTGCCTTGCCCTTTCCTTGCCCAACTAAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>445 136 69 61 56 52 52 39 20 19 18 18 9 6</canonical_bands>
                <polymorphic_bands>445 175 69 61 56 52 52 20 19 18 18 9 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>445 136 69 53 52 52 45 32 20 19 18 18 11 9 8 7 6</canonical_bands>
                <polymorphic_bands>445 168 69 53 52 52 45 20 19 18 18 11 9 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTACGATCATCATCTCTACTGG</pcr_primer_p1>
		<pcr_primer_p2>TCATCATTGACACCATAATACG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTACGATCATCATCTCTACTGGGCTCCCTGCTCCTAGTATGCGCCGTTTTGACAGCGGCTCGAGCCTCAATCCTCACAGACTCTCCTCCTCCACAAATTCTGACACGTCAGCTGCGGGTTGGGCGGCAATTTGAAATTTCCAGGGAAATACAAATTTCAGCATTTTCAGAGTTTTCCGTACTCGGTCTCGTTCTACCGTATGCTGGGACACGATCGTCAGTTGCGGCCGTATTATGGTGTCAATGATGA</canonical_amplicon>
		<polymorphic_amplicon>TCTACGATCATCATCTCTACTGGGCTCCCTGCTCCTAGTATGCGCCGTTTTGACAGCGGCTCGAGCCTCAATCCTCACAGACTCTCCTCCTCCACAARTTCTGACACGTCAGCTGCGGGTTGGGCGGCAATTTGAAATTTCCAGGGAAATACAAATTTCAGCATTTTCAGAGTTTTCCGTACTCGGTCTCGTTCTACCGTATGCTGGGACACGATCGTCAGTTGCGGCCGTATTATGGTGTCAATGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29652</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>71609</contig_pos>
        <strand></strand>
        <context>TTGGACCGCC[C/T]CTGGGCAAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCGCCCTTAGACCGTACTTGGACCGCCCGTGGCTCGCCCTTGGACCGCC</left_flank>
        <right_flank>CTGGGCAAGCTATGGGCAAATCATGAGCAATATTTCTTTGCCCATGTCTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCAAATTTCTAGGCCACCTTGAACAAAAAAGTTTCCAGATGCTTCTACGATCATCATCTCTACTGGGCTCCCTGCTCCTAGTATGCGCCGTTTTGACAGCGGCTCGAGCCTCAATCCTCACAGACTCTCCTCCTCCACAAATTCTGACACGTCAGCTGCGGGTTGGGCGGCAATTTGAAATTTCCAGGGAAATACAAATTTCAGCATTTTCAGAGTTTTCCGTACTCGGTCTCGTTCTACCGTATGCTGGGACACGATCGTCAGTTGCGGCCGTATTATGGTGTCAATGATGAGGTCAGTTGTTGGTCGAGGTGTGAGCAAGGTATGGGCAAGATATGGACAAGACCTTATCCTTGGCCTTGTCCGTGTCCTTGCCTTGGACCGCTCTTGGACCGCCCTTGGTTCGCCCTTGGCTCGCCCTTGGACCACCCTTGGACTGCCCCTTGGACCGCCCTTAGACCGTACTTGGACCGCCCGTGGCTCGCCCTTGGACCGCCCCTGGGCAAGCTATGGGCAAATCATGAGCAATATTTCTTTGCCCATGTCTTGATCAAGCATTGGCCCTAGGCTTAGGTTGTGAACAAGATATGGGTATGACCTTGCCCTTGTCTTGCCTTGCCCTTTCCTTGCCCAACTAAAAGTTAGATGTGCAGGTTGCCGCATTGATCGATTCGATGAACAACAATGATGACGTGGCATCATCATCTGGAGAAGAGGTCTATCCGACGAGACCCAGAAGAAGTGACGGTTTGCGAGGTTCGTTTTATTGGGCAAGGTTCGTAGTTTTGTTTAGTGTGCCTTTCTCGTAGGGGTACGGTAGAAAGTGTAGACAATTTTTTTTTCAAAATTTGCAAAACATTTTATGAATCGATCAGAAAGCTTTCAAGCCTTTGGGAATTTGGGAACTTTTTGAAACATTTTTCAAATTTAAAACAAAAATTTTGAAATGTGTTGTATTCCATCTGAAAGCCCTGGAAGTTTTCAACAAATCTGTGTGA</canonical>
            <polymorphic>TTCCAAATTTCTAGGCCACCTTGAACAAAAAAGTTTCCAGATGCTTCTACGATCATCATCTCTACTGGGCTCCCTGCTCCTAGTATGCGCCGTTTTGACAGCGGCTCGAGCCTCAATCCTCACAGACTCTCCTCCTCCACAAATTCTGACACGTCAGCTGCGGGTTGGGCGGCAATTTGAAATTTCCAGGGAAATACAAATTTCAGCATTTTCAGAGTTTTCCGTACTCGGTCTCGTTCTACCGTATGCTGGGACACGATCGTCAGTTGCGGCCGTATTATGGTGTCAATGATGAGGTCAGTTGTTGGTCGAGGTGTGAGCAAGGTATGGGCAAGATATGGACAAGACCTTATCCTTGGCCTTGTCCGTGTCCTTGCCTTGGACCGCTCTTGGACCGCCCTTGGTTCGCCCTTGGCTCGCCCTTGGACCACCCTTGGACTGCCCCTTGGACCGCCCTTAGACCGTACTTGGACCGCCCGTGGCTCGCCCTTGGACCGCCYCTGGGCAAGCTATGGGCAAATCATGAGCAATATTTCTTTGCCCATGTCTTGATCAAGCATTGGCCCTAGGCTTAGGTTGTGAACAAGATATGGGTATGACCTTGCCCTTGTCTTGCCTTGCCCTTTCCTTGCCCAACTAAAAGTTAGATGTGCAGGTTGCCGCATTGATCGATTCGATGAACAACAATGATGACGTGGCATCATCATCTGGAGAAGAGGTCTATCCGACGAGACCCAGAAGAAGTGACGGTTTGCGAGGTTCGTTTTATTGGGCAAGGTTCGTAGTTTTGTTTAGTGTGCCTTTCTCGTAGGGGTACGGTAGAAAGTGTAGACAATTTTTTTTTCAAAATTTGCAAAACATTTTATGAATCGATCAGAAAGCTTTCAAGCCTTTGGGAATTTGGGAACTTTTTGAAACATTTTTCAAATTTAAAACAAAAATTTTGAAATGTGTTGTATTCCATCTGAAAGCCCTGGAAGTTTTCAACAAATCTGTGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>473 314 187 26</canonical_bands>
                <polymorphic_bands>787 187 26</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>407 186 168 65 33 28 23 22 12 11 11 11 11 11 1</canonical_bands>
                <polymorphic_bands>407 186 168 77 33 28 23 22 12 11 11 11 11</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>473 314 187 26</canonical_bands>
                <polymorphic_bands>787 187 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATGAGGTCAGTTGTTGGTC</pcr_primer_p1>
		<pcr_primer_p2>GCAAGGTCATACCCATATCTT</pcr_primer_p2>
		<pcr_amplicon_size>315</pcr_amplicon_size>
		<canonical_amplicon>GATGAGGTCAGTTGTTGGTCGAGGTGTGAGCAAGGTATGGGCAAGATATGGACAAGACCTTATCCTTGGCCTTGTCCGTGTCCTTGCCTTGGACCGCTCTTGGACCGCCCTTGGTTCGCCCTTGGCTCGCCCTTGGACCACCCTTGGACTGCCCCTTGGACCGCCCTTAGACCGTACTTGGACCGCCCGTGGCTCGCCCTTGGACCGCCCCTGGGCAAGCTATGGGCAAATCATGAGCAATATTTCTTTGCCCATGTCTTGATCAAGCATTGGCCCTAGGCTTAGGTTGTGAACAAGATATGGGTATGACCTTGC</canonical_amplicon>
		<polymorphic_amplicon>GATGAGGTCAGTTGTTGGTCGAGGTGTGAGCAAGGTATGGGCAAGATATGGACAAGACCTTATCCTTGGCCTTGTCCGTGTCCTTGCCTTGGACCGCTCTTGGACCGCCCTTGGTTCGCCCTTGGCTCGCCCTTGGACCACCCTTGGACTGCCCCTTGGACCGCCCTTAGACCGTACTTGGACCGCCCGTGGCTCGCCCTTGGACCGCCYCTGGGCAAGCTATGGGCAAATCATGAGCAATATTTCTTTGCCCATGTCTTGATCAAGCATTGGCCCTAGGCTTAGGTTGTGAACAAGATATGGGTATGACCTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29653</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>76943</contig_pos>
        <strand>+</strand>
        <context>GCCACGCGGG[G/T]ARAGAGAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGAGGCGAGTGTTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGG</left_flank>
        <right_flank>AAAGAGAAAGCGGCCGCCCGATTGCATACATAAATAGATTAAAAAGATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTCACGTGAGCTCATCATGAAGCAGGCTCTTACGAGCCTTTTTCGACGCTACGTCAAAGCTCATATAGGCTCATTTGACGAAAATATTGATTTTGAAAAAAGCTCATCGAGGCTCATTTGACGTAATTATTGATTTTGATAAAAGCTCATCAAGGCTCATTTGCAAAAAAGCTCACGTCGACTCTTTTTCAAAAAAAAGGCTCACGGAAGCATAGTTGAAAAAATGAACTGGAAAAATGTTCACGTGGCAAAAATAATAATATTAGGGGTTTGCAAAAGTAATGCGCGTCAAGTTTGGTGTTTTGTATCTCACCCAAAACAAACGGTTTGTGTTCAATTTTTTTTTGTTTTAAAAAGCGCGTTCTTGGGCTTCACTTTGTTATATTTTCATGAAAAAATAATGTTCTCGAAATTCCGTTTGAATATGCCCCTCGGTGACTTGAACTTGTCGAGGCGAGTGTTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGGCCGCCCGATTGCATACATAAATAGATTAAAAAGATTTTTAAAAGTTTTTCAGAAATGCGCAAAACTAAATGAAAGTTTTGAAAATTGACCGAAAATTTAGAAATGTTTTGTCAGAAGTTTCTCTTAAATTCTCGAAAATTGACAATTTAAAAAATTCCAATGCAGTCCATCAGAAACACAATATTACAACATCCCAATCTTAATATTCTGAAACAGTTTTTTTTTCAGAAACATAAAGAATTTTCAAAATTTCGGATAAACAATTTGAAAAACAAATCAGAATTTTCGGAAAAATGTTTTTTTGTGGTTTCCAGTAGTTTTTTGTAAAAAAGTTTCCAAACTTTTGAAACAAATTTCCATGAATATTTAATCAAACTAAAAATCCAGTTTCAGAATTTCCATTTCGAAATTCGAATTTTCGAATTGTTTTGTTGTCATCATTCCTGTGTTTCAAAACCCCAAATGATAAAAGAAATCTCGGAAAATT</canonical>
            <polymorphic>GCTCACGTGAGCTCATCATGAAGCAGGCTCTTACGAGCCTTTTTCGACGCTACGTCAAAGCTCATATAGGCTCATTTGACGAAAATATTGATTTTGAAAAAAGCTCATCGAGGCTCATTTGACGTAATTATTGATTTTGATAAAAGCTCATCAAGGCTCATTTGCAAAAAAGCTCACGTCGACTCTTTTTCAAAAAAAAGGCTCACGGAAGCATAGTTGAAAAAATGAACTGGAAAAATGTTCACGTGGCAAAAATAATAATATTAGGGGTTTGCAAAAGTAATGCGCGTCAAGTTTGGTGTTTTGTATCTCACCCAAAACAAACGGTTTGTGTTCAATTTTTTTTTGTTTTAAAAAGCGCGTTCTTGGGCTTCACTTTGTTATATTTTCATGAAAAAATAATGTTCTCGAAATTCCGTTTGAATATGCCCCTCGGTGACTTGAACTTGTCGAGGCGAGTGTTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGKAAAGAGAAAGCGGCCGCCCGATTGCATACATAAATAGATTAAAAAGATTTTTAAAAGTTTTTCAGAAATGCGCAAAACTAAATGAAAGTTTTGAAAATTGACCGAAAATTTAGAAATGTTTTGTCAGAAGTTTCTCTTAAATTCTCGAAAATTGACAATTTAAAAAATTCCAATGCAGTCCATCAGAAACACAATATTACAACATCCCAATCTTAATATTCTGAAACAGTTTTTTTTTCAGAAACATAAAGAATTTTCAAAATTTCGGATAAACAATTTGAAAAACAAATCAGAATTTTCGGAAAAATGTTTTTTTGTGGTTTCCAGTAGTTTTTTGTAAAAAAGTTTCCAAACTTTTGAAACAAATTTCCATGAATATTTAATCAAACTAAAAATCCAGTTTCAGAATTTCCATTTCGAAATTCGAATTTTCGAATTGTTTTGTTGTCATCATTCCTGTGTTTCAAAACCCCAAATGATAAAAGAAATCTCGGAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCCNNNNNGGC</site>
                <isoschizomers>
                    <enzyme>BglI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>503 472 25</canonical_bands>
                <polymorphic_bands>975 25</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCGAAATTCCGTTTGAATA</pcr_primer_p1>
		<pcr_primer_p2>CATTTCTAAATTTTCGGTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>212</pcr_amplicon_size>
		<canonical_amplicon>CTCGAAATTCCGTTTGAATATGCCCCTCGGTGACTTGAACTTGTCGAGGCGAGTGTTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGGCCGCCCGATTGCATACATAAATAGATTAAAAAGATTTTTAAAAGTTTTTCAGAAATGCGCAAAACTAAATGAAAGTTTTGAAAATTGACCGAAAATTTAGAAATG</canonical_amplicon>
		<polymorphic_amplicon>CTCGAAATTCCGTTTGAATATGCCCCTCGGTGACTTGAACTTGTCGAGGCGAGTGTTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGKAAAGAGAAAGCGGCCGCCCGATTGCATACATAAATAGATTAAAAAGATTTTTAAAAGTTTTTCAGAAATGCGCAAAACTAAATGAAAGTTTTGAAAATTGACCGAAAATTTAGAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29654</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>76945</contig_pos>
        <strand>+</strand>
        <context>CACGCGGGKA[A/G]AGAGAAAGCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGGCGAGTGTTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCA</left_flank>
        <right_flank>AGAGAAAGCGGCCGCCCGATTGCATACATAAATAGATTAAAAAGATTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACGTGAGCTCATCATGAAGCAGGCTCTTACGAGCCTTTTTCGACGCTACGTCAAAGCTCATATAGGCTCATTTGACGAAAATATTGATTTTGAAAAAAGCTCATCGAGGCTCATTTGACGTAATTATTGATTTTGATAAAAGCTCATCAAGGCTCATTTGCAAAAAAGCTCACGTCGACTCTTTTTCAAAAAAAAGGCTCACGGAAGCATAGTTGAAAAAATGAACTGGAAAAATGTTCACGTGGCAAAAATAATAATATTAGGGGTTTGCAAAAGTAATGCGCGTCAAGTTTGGTGTTTTGTATCTCACCCAAAACAAACGGTTTGTGTTCAATTTTTTTTTGTTTTAAAAAGCGCGTTCTTGGGCTTCACTTTGTTATATTTTCATGAAAAAATAATGTTCTCGAAATTCCGTTTGAATATGCCCCTCGGTGACTTGAACTTGTCGAGGCGAGTGTTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGGCCGCCCGATTGCATACATAAATAGATTAAAAAGATTTTTAAAAGTTTTTCAGAAATGCGCAAAACTAAATGAAAGTTTTGAAAATTGACCGAAAATTTAGAAATGTTTTGTCAGAAGTTTCTCTTAAATTCTCGAAAATTGACAATTTAAAAAATTCCAATGCAGTCCATCAGAAACACAATATTACAACATCCCAATCTTAATATTCTGAAACAGTTTTTTTTTCAGAAACATAAAGAATTTTCAAAATTTCGGATAAACAATTTGAAAAACAAATCAGAATTTTCGGAAAAATGTTTTTTTGTGGTTTCCAGTAGTTTTTTGTAAAAAAGTTTCCAAACTTTTGAAACAAATTTCCATGAATATTTAATCAAACTAAAAATCCAGTTTCAGAATTTCCATTTCGAAATTCGAATTTTCGAATTGTTTTGTTGTCATCATTCCTGTGTTTCAAAACCCCAAATGATAAAAGAAATCTCGGAAAATTTT</canonical>
            <polymorphic>TCACGTGAGCTCATCATGAAGCAGGCTCTTACGAGCCTTTTTCGACGCTACGTCAAAGCTCATATAGGCTCATTTGACGAAAATATTGATTTTGAAAAAAGCTCATCGAGGCTCATTTGACGTAATTATTGATTTTGATAAAAGCTCATCAAGGCTCATTTGCAAAAAAGCTCACGTCGACTCTTTTTCAAAAAAAAGGCTCACGGAAGCATAGTTGAAAAAATGAACTGGAAAAATGTTCACGTGGCAAAAATAATAATATTAGGGGTTTGCAAAAGTAATGCGCGTCAAGTTTGGTGTTTTGTATCTCACCCAAAACAAACGGTTTGTGTTCAATTTTTTTTTGTTTTAAAAAGCGCGTTCTTGGGCTTCACTTTGTTATATTTTCATGAAAAAATAATGTTCTCGAAATTCCGTTTGAATATGCCCCTCGGTGACTTGAACTTGTCGAGGCGAGTGTTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCARAGAGAAAGCGGCCGCCCGATTGCATACATAAATAGATTAAAAAGATTTTTAAAAGTTTTTCAGAAATGCGCAAAACTAAATGAAAGTTTTGAAAATTGACCGAAAATTTAGAAATGTTTTGTCAGAAGTTTCTCTTAAATTCTCGAAAATTGACAATTTAAAAAATTCCAATGCAGTCCATCAGAAACACAATATTACAACATCCCAATCTTAATATTCTGAAACAGTTTTTTTTTCAGAAACATAAAGAATTTTCAAAATTTCGGATAAACAATTTGAAAAACAAATCAGAATTTTCGGAAAAATGTTTTTTTGTGGTTTCCAGTAGTTTTTTGTAAAAAAGTTTCCAAACTTTTGAAACAAATTTCCATGAATATTTAATCAAACTAAAAATCCAGTTTCAGAATTTCCATTTCGAAATTCGAATTTTCGAATTGTTTTGTTGTCATCATTCCTGTGTTTCAAAACCCCAAATGATAAAAGAAATCTCGGAAAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGAAATTCCGTTTGAATA</pcr_primer_p1>
		<pcr_primer_p2>CATTTCTAAATTTTCGGTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>212</pcr_amplicon_size>
		<canonical_amplicon>CTCGAAATTCCGTTTGAATATGCCCCTCGGTGACTTGAACTTGTCGAGGCGAGTGTTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGGCCGCCCGATTGCATACATAAATAGATTAAAAAGATTTTTAAAAGTTTTTCAGAAATGCGCAAAACTAAATGAAAGTTTTGAAAATTGACCGAAAATTTAGAAATG</canonical_amplicon>
		<polymorphic_amplicon>CTCGAAATTCCGTTTGAATATGCCCCTCGGTGACTTGAACTTGTCGAGGCGAGTGTTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCARAGAGAAAGCGGCCGCCCGATTGCATACATAAATAGATTAAAAAGATTTTTAAAAGTTTTTCAGAAATGCGCAAAACTAAATGAAAGTTTTGAAAATTGACCGAAAATTTAGAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29655</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>76982</contig_pos>
        <strand>+</strand>
        <context>CATAAATAGA[G/T]TAAAAAGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGCCACGCGGGCAAAGAGAAAGCGGCCGCCCGATTGCATACATAAATAGA</left_flank>
        <right_flank>TAAAAAGATTTTTAAAAGTTTTTCAGAAATGCGCAAAACTAAATGAAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTCGACGCTACGTCAAAGCTCATATAGGCTCATTTGACGAAAATATTGATTTTGAAAAAAGCTCATCGAGGCTCATTTGACGTAATTATTGATTTTGATAAAAGCTCATCAAGGCTCATTTGCAAAAAAGCTCACGTCGACTCTTTTTCAAAAAAAAGGCTCACGGAAGCATAGTTGAAAAAATGAACTGGAAAAATGTTCACGTGGCAAAAATAATAATATTAGGGGTTTGCAAAAGTAATGCGCGTCAAGTTTGGTGTTTTGTATCTCACCCAAAACAAACGGTTTGTGTTCAATTTTTTTTTGTTTTAAAAAGCGCGTTCTTGGGCTTCACTTTGTTATATTTTCATGAAAAAATAATGTTCTCGAAATTCCGTTTGAATATGCCCCTCGGTGACTTGAACTTGTCGAGGCGAGTGTTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGGCCGCCCGATTGCATACATAAATAGATTAAAAAGATTTTTAAAAGTTTTTCAGAAATGCGCAAAACTAAATGAAAGTTTTGAAAATTGACCGAAAATTTAGAAATGTTTTGTCAGAAGTTTCTCTTAAATTCTCGAAAATTGACAATTTAAAAAATTCCAATGCAGTCCATCAGAAACACAATATTACAACATCCCAATCTTAATATTCTGAAACAGTTTTTTTTTCAGAAACATAAAGAATTTTCAAAATTTCGGATAAACAATTTGAAAAACAAATCAGAATTTTCGGAAAAATGTTTTTTTGTGGTTTCCAGTAGTTTTTTGTAAAAAAGTTTCCAAACTTTTGAAACAAATTTCCATGAATATTTAATCAAACTAAAAATCCAGTTTCAGAATTTCCATTTCGAAATTCGAATTTTCGAATTGTTTTGTTGTCATCATTCCTGTGTTTCAAAACCCCAAATGATAAAAGAAATCTCGGAAAATTTTTTAGTTTTAAAATTCTTAAAGGGGGACTCCGACCAAA</canonical>
            <polymorphic>TTTTTCGACGCTACGTCAAAGCTCATATAGGCTCATTTGACGAAAATATTGATTTTGAAAAAAGCTCATCGAGGCTCATTTGACGTAATTATTGATTTTGATAAAAGCTCATCAAGGCTCATTTGCAAAAAAGCTCACGTCGACTCTTTTTCAAAAAAAAGGCTCACGGAAGCATAGTTGAAAAAATGAACTGGAAAAATGTTCACGTGGCAAAAATAATAATATTAGGGGTTTGCAAAAGTAATGCGCGTCAAGTTTGGTGTTTTGTATCTCACCCAAAACAAACGGTTTGTGTTCAATTTTTTTTTGTTTTAAAAAGCGCGTTCTTGGGCTTCACTTTGTTATATTTTCATGAAAAAATAATGTTCTCGAAATTCCGTTTGAATATGCCCCTCGGTGACTTGAACTTGTCGAGGCGAGTGTTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGGCCGCCCGATTGCATACATAAATAGAKTAAAAAGATTTTTAAAAGTTTTTCAGAAATGCGCAAAACTAAATGAAAGTTTTGAAAATTGACCGAAAATTTAGAAATGTTTTGTCAGAAGTTTCTCTTAAATTCTCGAAAATTGACAATTTAAAAAATTCCAATGCAGTCCATCAGAAACACAATATTACAACATCCCAATCTTAATATTCTGAAACAGTTTTTTTTTCAGAAACATAAAGAATTTTCAAAATTTCGGATAAACAATTTGAAAAACAAATCAGAATTTTCGGAAAAATGTTTTTTTGTGGTTTCCAGTAGTTTTTTGTAAAAAAGTTTCCAAACTTTTGAAACAAATTTCCATGAATATTTAATCAAACTAAAAATCCAGTTTCAGAATTTCCATTTCGAAATTCGAATTTTCGAATTGTTTTGTTGTCATCATTCCTGTGTTTCAAAACCCCAAATGATAAAAGAAATCTCGGAAAATTTTTTAGTTTTAAAATTCTTAAAGGGGGACTCCGACCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>312 188 167 129 86 53 23 21 12 9</canonical_bands>
                <polymorphic_bands>312 200 167 129 86 53 23 21 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCGAAATTCCGTTTGAATA</pcr_primer_p1>
		<pcr_primer_p2>CATTTCTAAATTTTCGGTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>212</pcr_amplicon_size>
		<canonical_amplicon>CTCGAAATTCCGTTTGAATATGCCCCTCGGTGACTTGAACTTGTCGAGGCGAGTGTTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGGCCGCCCGATTGCATACATAAATAGATTAAAAAGATTTTTAAAAGTTTTTCAGAAATGCGCAAAACTAAATGAAAGTTTTGAAAATTGACCGAAAATTTAGAAATG</canonical_amplicon>
		<polymorphic_amplicon>CTCGAAATTCCGTTTGAATATGCCCCTCGGTGACTTGAACTTGTCGAGGCGAGTGTTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGGCCGCCCGATTGCATACATAAATAGAKTAAAAAGATTTTTAAAAGTTTTTCAGAAATGCGCAAAACTAAATGAAAGTTTTGAAAATTGACCGAAAATTTAGAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29656</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>76995</contig_pos>
        <strand>+</strand>
        <context>AAAAGATTTT[C/T]AAAAGTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGAGAAAGCGGCCGCCCGATTGCATACATAAATAGATTAAAAAGATTTT</left_flank>
        <right_flank>AAAAGTTTTTCAGAAATGCGCAAAACTAAATGAAAGTTTTGAAAATTGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTCAAAGCTCATATAGGCTCATTTGACGAAAATATTGATTTTGAAAAAAGCTCATCGAGGCTCATTTGACGTAATTATTGATTTTGATAAAAGCTCATCAAGGCTCATTTGCAAAAAAGCTCACGTCGACTCTTTTTCAAAAAAAAGGCTCACGGAAGCATAGTTGAAAAAATGAACTGGAAAAATGTTCACGTGGCAAAAATAATAATATTAGGGGTTTGCAAAAGTAATGCGCGTCAAGTTTGGTGTTTTGTATCTCACCCAAAACAAACGGTTTGTGTTCAATTTTTTTTTGTTTTAAAAAGCGCGTTCTTGGGCTTCACTTTGTTATATTTTCATGAAAAAATAATGTTCTCGAAATTCCGTTTGAATATGCCCCTCGGTGACTTGAACTTGTCGAGGCGAGTGTTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGGCCGCCCGATTGCATACATAAATAGATTAAAAAGATTTTTAAAAGTTTTTCAGAAATGCGCAAAACTAAATGAAAGTTTTGAAAATTGACCGAAAATTTAGAAATGTTTTGTCAGAAGTTTCTCTTAAATTCTCGAAAATTGACAATTTAAAAAATTCCAATGCAGTCCATCAGAAACACAATATTACAACATCCCAATCTTAATATTCTGAAACAGTTTTTTTTTCAGAAACATAAAGAATTTTCAAAATTTCGGATAAACAATTTGAAAAACAAATCAGAATTTTCGGAAAAATGTTTTTTTGTGGTTTCCAGTAGTTTTTTGTAAAAAAGTTTCCAAACTTTTGAAACAAATTTCCATGAATATTTAATCAAACTAAAAATCCAGTTTCAGAATTTCCATTTCGAAATTCGAATTTTCGAATTGTTTTGTTGTCATCATTCCTGTGTTTCAAAACCCCAAATGATAAAAGAAATCTCGGAAAATTTTTTAGTTTTAAAATTCTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCA</canonical>
            <polymorphic>CGTCAAAGCTCATATAGGCTCATTTGACGAAAATATTGATTTTGAAAAAAGCTCATCGAGGCTCATTTGACGTAATTATTGATTTTGATAAAAGCTCATCAAGGCTCATTTGCAAAAAAGCTCACGTCGACTCTTTTTCAAAAAAAAGGCTCACGGAAGCATAGTTGAAAAAATGAACTGGAAAAATGTTCACGTGGCAAAAATAATAATATTAGGGGTTTGCAAAAGTAATGCGCGTCAAGTTTGGTGTTTTGTATCTCACCCAAAACAAACGGTTTGTGTTCAATTTTTTTTTGTTTTAAAAAGCGCGTTCTTGGGCTTCACTTTGTTATATTTTCATGAAAAAATAATGTTCTCGAAATTCCGTTTGAATATGCCCCTCGGTGACTTGAACTTGTCGAGGCGAGTGTTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGGCCGCCCGATTGCATACATAAATAGATTAAAAAGATTTTYAAAAGTTTTTCAGAAATGCGCAAAACTAAATGAAAGTTTTGAAAATTGACCGAAAATTTAGAAATGTTTTGTCAGAAGTTTCTCTTAAATTCTCGAAAATTGACAATTTAAAAAATTCCAATGCAGTCCATCAGAAACACAATATTACAACATCCCAATCTTAATATTCTGAAACAGTTTTTTTTTCAGAAACATAAAGAATTTTCAAAATTTCGGATAAACAATTTGAAAAACAAATCAGAATTTTCGGAAAAATGTTTTTTTGTGGTTTCCAGTAGTTTTTTGTAAAAAAGTTTCCAAACTTTTGAAACAAATTTCCATGAATATTTAATCAAACTAAAAATCCAGTTTCAGAATTTCCATTTCGAAATTCGAATTTTCGAATTGTTTTGTTGTCATCATTCCTGTGTTTCAAAACCCCAAATGATAAAAGAAATCTCGGAAAATTTTTTAGTTTTAAAATTCTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>349 300 200 109 42</canonical_bands>
                <polymorphic_bands>349 309 300 42</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>299 188 167 129 86 53 34 23 12 9</canonical_bands>
                <polymorphic_bands>299 188 167 129 98 53 34 23 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCGAAATTCCGTTTGAATA</pcr_primer_p1>
		<pcr_primer_p2>CATTTCTAAATTTTCGGTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>212</pcr_amplicon_size>
		<canonical_amplicon>CTCGAAATTCCGTTTGAATATGCCCCTCGGTGACTTGAACTTGTCGAGGCGAGTGTTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGGCCGCCCGATTGCATACATAAATAGATTAAAAAGATTTTTAAAAGTTTTTCAGAAATGCGCAAAACTAAATGAAAGTTTTGAAAATTGACCGAAAATTTAGAAATG</canonical_amplicon>
		<polymorphic_amplicon>CTCGAAATTCCGTTTGAATATGCCCCTCGGTGACTTGAACTTGTCGAGGCGAGTGTTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGGCCGCCCGATTGCATACATAAATAGATTAAAAAGATTTTYAAAAGTTTTTCAGAAATGCGCAAAACTAAATGAAAGTTTTGAAAATTGACCGAAAATTTAGAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29657</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>77062</contig_pos>
        <strand>+</strand>
        <context>TTTAGAAATG[G/T]TTTGTCAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGCGCAAAACTAAATGAAAGTTTTGAAAATTGACCGAAAATTTAGAAATG</left_flank>
        <right_flank>TTTGTCAGAAGTTTCTCTTAAATTCTCGAAAATTGACAATTTAAAAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACGTAATTATTGATTTTGATAAAAGCTCATCAAGGCTCATTTGCAAAAAAGCTCACGTCGACTCTTTTTCAAAAAAAAGGCTCACGGAAGCATAGTTGAAAAAATGAACTGGAAAAATGTTCACGTGGCAAAAATAATAATATTAGGGGTTTGCAAAAGTAATGCGCGTCAAGTTTGGTGTTTTGTATCTCACCCAAAACAAACGGTTTGTGTTCAATTTTTTTTTGTTTTAAAAAGCGCGTTCTTGGGCTTCACTTTGTTATATTTTCATGAAAAAATAATGTTCTCGAAATTCCGTTTGAATATGCCCCTCGGTGACTTGAACTTGTCGAGGCGAGTGTTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGGCCGCCCGATTGCATACATAAATAGATTAAAAAGATTTTTAAAAGTTTTTCAGAAATGCGCAAAACTAAATGAAAGTTTTGAAAATTGACCGAAAATTTAGAAATGTTTTGTCAGAAGTTTCTCTTAAATTCTCGAAAATTGACAATTTAAAAAATTCCAATGCAGTCCATCAGAAACACAATATTACAACATCCCAATCTTAATATTCTGAAACAGTTTTTTTTTCAGAAACATAAAGAATTTTCAAAATTTCGGATAAACAATTTGAAAAACAAATCAGAATTTTCGGAAAAATGTTTTTTTGTGGTTTCCAGTAGTTTTTTGTAAAAAAGTTTCCAAACTTTTGAAACAAATTTCCATGAATATTTAATCAAACTAAAAATCCAGTTTCAGAATTTCCATTTCGAAATTCGAATTTTCGAATTGTTTTGTTGTCATCATTCCTGTGTTTCAAAACCCCAAATGATAAAAGAAATCTCGGAAAATTTTTTAGTTTTAAAATTCTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTTTCAAAAAATATGTATTTTCATAATATTATTGCGAAAAAATTCAAAAAAAATCCTAAA</canonical>
            <polymorphic>TGACGTAATTATTGATTTTGATAAAAGCTCATCAAGGCTCATTTGCAAAAAAGCTCACGTCGACTCTTTTTCAAAAAAAAGGCTCACGGAAGCATAGTTGAAAAAATGAACTGGAAAAATGTTCACGTGGCAAAAATAATAATATTAGGGGTTTGCAAAAGTAATGCGCGTCAAGTTTGGTGTTTTGTATCTCACCCAAAACAAACGGTTTGTGTTCAATTTTTTTTTGTTTTAAAAAGCGCGTTCTTGGGCTTCACTTTGTTATATTTTCATGAAAAAATAATGTTCTCGAAATTCCGTTTGAATATGCCCCTCGGTGACTTGAACTTGTCGAGGCGAGTGTTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGGCCGCCCGATTGCATACATAAATAGATTAAAAAGATTTTTAAAAGTTTTTCAGAAATGCGCAAAACTAAATGAAAGTTTTGAAAATTGACCGAAAATTTAGAAATGKTTTGTCAGAAGTTTCTCTTAAATTCTCGAAAATTGACAATTTAAAAAATTCCAATGCAGTCCATCAGAAACACAATATTACAACATCCCAATCTTAATATTCTGAAACAGTTTTTTTTTCAGAAACATAAAGAATTTTCAAAATTTCGGATAAACAATTTGAAAAACAAATCAGAATTTTCGGAAAAATGTTTTTTTGTGGTTTCCAGTAGTTTTTTGTAAAAAAGTTTCCAAACTTTTGAAACAAATTTCCATGAATATTTAATCAAACTAAAAATCCAGTTTCAGAATTTCCATTTCGAAATTCGAATTTTCGAATTGTTTTGTTGTCATCATTCCTGTGTTTCAAAACCCCAAATGATAAAAGAAATCTCGGAAAATTTTTTAGTTTTAAAATTCTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTTTCAAAAAATATGTATTTTCATAATATTATTGCGAAAAAATTCAAAAAAAATCCTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCGATTGCATACATAAATAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAAAATTCTTTATGTTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CCCGATTGCATACATAAATAGATTAAAAAGATTTTTAAAAGTTTTTCAGAAATGCGCAAAACTAAATGAAAGTTTTGAAAATTGACCGAAAATTTAGAAATGTTTTGTCAGAAGTTTCTCTTAAATTCTCGAAAATTGACAATTTAAAAAATTCCAATGCAGTCCATCAGAAACACAATATTACAACATCCCAATCTTAATATTCTGAAACAGTTTTTTTTTCAGAAACATAAAGAATTTTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>CCCGATTGCATACATAAATAGATTAAAAAGATTTTTAAAAGTTTTTCAGAAATGCGCAAAACTAAATGAAAGTTTTGAAAATTGACCGAAAATTTAGAAATGKTTTGTCAGAAGTTTCTCTTAAATTCTCGAAAATTGACAATTTAAAAAATTCCAATGCAGTCCATCAGAAACACAATATTACAACATCCCAATCTTAATATTCTGAAACAGTTTTTTTTTCAGAAACATAAAGAATTTTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29658</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>77081</contig_pos>
        <strand>+</strand>
        <context>AAGTTTCTCT[A/T]AAATTCTCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTTTGAAAATTGACCGAAAATTTAGAAATGTTTTGTCAGAAGTTTCTCT</left_flank>
        <right_flank>AAATTCTCGAAAATTGACAATTTAAAAAATTCCAATGCAGTCCATCAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATAAAAGCTCATCAAGGCTCATTTGCAAAAAAGCTCACGTCGACTCTTTTTCAAAAAAAAGGCTCACGGAAGCATAGTTGAAAAAATGAACTGGAAAAATGTTCACGTGGCAAAAATAATAATATTAGGGGTTTGCAAAAGTAATGCGCGTCAAGTTTGGTGTTTTGTATCTCACCCAAAACAAACGGTTTGTGTTCAATTTTTTTTTGTTTTAAAAAGCGCGTTCTTGGGCTTCACTTTGTTATATTTTCATGAAAAAATAATGTTCTCGAAATTCCGTTTGAATATGCCCCTCGGTGACTTGAACTTGTCGAGGCGAGTGTTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGGCCGCCCGATTGCATACATAAATAGATTAAAAAGATTTTTAAAAGTTTTTCAGAAATGCGCAAAACTAAATGAAAGTTTTGAAAATTGACCGAAAATTTAGAAATGTTTTGTCAGAAGTTTCTCTTAAATTCTCGAAAATTGACAATTTAAAAAATTCCAATGCAGTCCATCAGAAACACAATATTACAACATCCCAATCTTAATATTCTGAAACAGTTTTTTTTTCAGAAACATAAAGAATTTTCAAAATTTCGGATAAACAATTTGAAAAACAAATCAGAATTTTCGGAAAAATGTTTTTTTGTGGTTTCCAGTAGTTTTTTGTAAAAAAGTTTCCAAACTTTTGAAACAAATTTCCATGAATATTTAATCAAACTAAAAATCCAGTTTCAGAATTTCCATTTCGAAATTCGAATTTTCGAATTGTTTTGTTGTCATCATTCCTGTGTTTCAAAACCCCAAATGATAAAAGAAATCTCGGAAAATTTTTTAGTTTTAAAATTCTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTTTCAAAAAATATGTATTTTCATAATATTATTGCGAAAAAATTCAAAAAAAATCCTAAATCCCCGAAAAACGGCGTTG</canonical>
            <polymorphic>GATAAAAGCTCATCAAGGCTCATTTGCAAAAAAGCTCACGTCGACTCTTTTTCAAAAAAAAGGCTCACGGAAGCATAGTTGAAAAAATGAACTGGAAAAATGTTCACGTGGCAAAAATAATAATATTAGGGGTTTGCAAAAGTAATGCGCGTCAAGTTTGGTGTTTTGTATCTCACCCAAAACAAACGGTTTGTGTTCAATTTTTTTTTGTTTTAAAAAGCGCGTTCTTGGGCTTCACTTTGTTATATTTTCATGAAAAAATAATGTTCTCGAAATTCCGTTTGAATATGCCCCTCGGTGACTTGAACTTGTCGAGGCGAGTGTTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGGCCGCCCGATTGCATACATAAATAGATTAAAAAGATTTTTAAAAGTTTTTCAGAAATGCGCAAAACTAAATGAAAGTTTTGAAAATTGACCGAAAATTTAGAAATGTTTTGTCAGAAGTTTCTCTWAAATTCTCGAAAATTGACAATTTAAAAAATTCCAATGCAGTCCATCAGAAACACAATATTACAACATCCCAATCTTAATATTCTGAAACAGTTTTTTTTTCAGAAACATAAAGAATTTTCAAAATTTCGGATAAACAATTTGAAAAACAAATCAGAATTTTCGGAAAAATGTTTTTTTGTGGTTTCCAGTAGTTTTTTGTAAAAAAGTTTCCAAACTTTTGAAACAAATTTCCATGAATATTTAATCAAACTAAAAATCCAGTTTCAGAATTTCCATTTCGAAATTCGAATTTTCGAATTGTTTTGTTGTCATCATTCCTGTGTTTCAAAACCCCAAATGATAAAAGAAATCTCGGAAAATTTTTTAGTTTTAAAATTCTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTTTCAAAAAATATGTATTTTCATAATATTATTGCGAAAAAATTCAAAAAAAATCCTAAATCCCCGAAAAACGGCGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>213 188 167 129 86 85 53 35 23 12 9</canonical_bands>
                <polymorphic_bands>213 188 167 129 109 85 53 35 12 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAAAGTTTTGAAAATTGACC</pcr_primer_p1>
		<pcr_primer_p2>AAACTACTGGAAACCACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATGAAAGTTTTGAAAATTGACCGAAAATTTAGAAATGTTTTGTCAGAAGTTTCTCTTAAATTCTCGAAAATTGACAATTTAAAAAATTCCAATGCAGTCCATCAGAAACACAATATTACAACATCCCAATCTTAATATTCTGAAACAGTTTTTTTTTCAGAAACATAAAGAATTTTCAAAATTTCGGATAAACAATTTGAAAAACAAATCAGAATTTTCGGAAAAATGTTTTTTTGTGGTTTCCAGTAGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATGAAAGTTTTGAAAATTGACCGAAAATTTAGAAATGTTTTGTCAGAAGTTTCTCTWAAATTCTCGAAAATTGACAATTTAAAAAATTCCAATGCAGTCCATCAGAAACACAATATTACAACATCCCAATCTTAATATTCTGAAACAGTTTTTTTTTCAGAAACATAAAGAATTTTCAAAATTTCGGATAAACAATTTGAAAAACAAATCAGAATTTTCGGAAAAATGTTTTTTTGTGGTTTCCAGTAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29659</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>77173</contig_pos>
        <strand>+</strand>
        <context>TCTGAAACAG[A/C]TTTTTTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCATCAGAAACACAATATTACAACATCCCAATCTTAATATTCTGAAACAG</left_flank>
        <right_flank>TTTTTTTTCAGAAACATAAAGAATTTTCAAAATTTCGGATAAACAATTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAAAAATGTTCACGTGGCAAAAATAATAATATTAGGGGTTTGCAAAAGTAATGCGCGTCAAGTTTGGTGTTTTGTATCTCACCCAAAACAAACGGTTTGTGTTCAATTTTTTTTTGTTTTAAAAAGCGCGTTCTTGGGCTTCACTTTGTTATATTTTCATGAAAAAATAATGTTCTCGAAATTCCGTTTGAATATGCCCCTCGGTGACTTGAACTTGTCGAGGCGAGTGTTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGGCCGCCCGATTGCATACATAAATAGATTAAAAAGATTTTTAAAAGTTTTTCAGAAATGCGCAAAACTAAATGAAAGTTTTGAAAATTGACCGAAAATTTAGAAATGTTTTGTCAGAAGTTTCTCTTAAATTCTCGAAAATTGACAATTTAAAAAATTCCAATGCAGTCCATCAGAAACACAATATTACAACATCCCAATCTTAATATTCTGAAACAGTTTTTTTTTCAGAAACATAAAGAATTTTCAAAATTTCGGATAAACAATTTGAAAAACAAATCAGAATTTTCGGAAAAATGTTTTTTTGTGGTTTCCAGTAGTTTTTTGTAAAAAAGTTTCCAAACTTTTGAAACAAATTTCCATGAATATTTAATCAAACTAAAAATCCAGTTTCAGAATTTCCATTTCGAAATTCGAATTTTCGAATTGTTTTGTTGTCATCATTCCTGTGTTTCAAAACCCCAAATGATAAAAGAAATCTCGGAAAATTTTTTAGTTTTAAAATTCTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTTTCAAAAAATATGTATTTTCATAATATTATTGCGAAAAAATTCAAAAAAAATCCTAAATCCCCGAAAAACGGCGTTGAAAAAAAAAGGATTTGAATTCCCGCGCAGTGAGAAACCTAGGCCACGGCATCATAGCGTCTTTCTTACATGGAAATTTTTCCGGATTTTTAC</canonical>
            <polymorphic>TGGAAAAATGTTCACGTGGCAAAAATAATAATATTAGGGGTTTGCAAAAGTAATGCGCGTCAAGTTTGGTGTTTTGTATCTCACCCAAAACAAACGGTTTGTGTTCAATTTTTTTTTGTTTTAAAAAGCGCGTTCTTGGGCTTCACTTTGTTATATTTTCATGAAAAAATAATGTTCTCGAAATTCCGTTTGAATATGCCCCTCGGTGACTTGAACTTGTCGAGGCGAGTGTTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGGCCGCCCGATTGCATACATAAATAGATTAAAAAGATTTTTAAAAGTTTTTCAGAAATGCGCAAAACTAAATGAAAGTTTTGAAAATTGACCGAAAATTTAGAAATGTTTTGTCAGAAGTTTCTCTTAAATTCTCGAAAATTGACAATTTAAAAAATTCCAATGCAGTCCATCAGAAACACAATATTACAACATCCCAATCTTAATATTCTGAAACAGMTTTTTTTTCAGAAACATAAAGAATTTTCAAAATTTCGGATAAACAATTTGAAAAACAAATCAGAATTTTCGGAAAAATGTTTTTTTGTGGTTTCCAGTAGTTTTTTGTAAAAAAGTTTCCAAACTTTTGAAACAAATTTCCATGAATATTTAATCAAACTAAAAATCCAGTTTCAGAATTTCCATTTCGAAATTCGAATTTTCGAATTGTTTTGTTGTCATCATTCCTGTGTTTCAAAACCCCAAATGATAAAAGAAATCTCGGAAAATTTTTTAGTTTTAAAATTCTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTTTCAAAAAATATGTATTTTCATAATATTATTGCGAAAAAATTCAAAAAAAATCCTAAATCCCCGAAAAACGGCGTTGAAAAAAAAAGGATTTGAATTCCCGCGCAGTGAGAAACCTAGGCCACGGCATCATAGCGTCTTTCTTACATGGAAATTTTTCCGGATTTTTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>502 402 96</canonical_bands>
                <polymorphic_bands>904 96</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAAAGTTTTGAAAATTGACC</pcr_primer_p1>
		<pcr_primer_p2>AAACTACTGGAAACCACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATGAAAGTTTTGAAAATTGACCGAAAATTTAGAAATGTTTTGTCAGAAGTTTCTCTTAAATTCTCGAAAATTGACAATTTAAAAAATTCCAATGCAGTCCATCAGAAACACAATATTACAACATCCCAATCTTAATATTCTGAAACAGTTTTTTTTTCAGAAACATAAAGAATTTTCAAAATTTCGGATAAACAATTTGAAAAACAAATCAGAATTTTCGGAAAAATGTTTTTTTGTGGTTTCCAGTAGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATGAAAGTTTTGAAAATTGACCGAAAATTTAGAAATGTTTTGTCAGAAGTTTCTCTTAAATTCTCGAAAATTGACAATTTAAAAAATTCCAATGCAGTCCATCAGAAACACAATATTACAACATCCCAATCTTAATATTCTGAAACAGMTTTTTTTTCAGAAACATAAAGAATTTTCAAAATTTCGGATAAACAATTTGAAAAACAAATCAGAATTTTCGGAAAAATGTTTTTTTGTGGTTTCCAGTAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29660</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>113540</contig_pos>
        <strand></strand>
        <context>CGAGAAAATG[A/C]ATTTTCTTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCGGTAGCTGCGCGGTACTTTCAATATTTAGCTCGTAAGTCGAGAAAATG</left_flank>
        <right_flank>ATTTTCTTGGAAAGATAAAGAACTGAAAAAAAATTGAACATTATGAAAAT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGAAAATGTGCATTATTTGAACTTTAAGTAAAACCAGGAAGTTTTGTTCAATGATAAAAAATTCGAAACAAATTTAACTGTTTTTATAAGAAGATATGAAAAGTATGGAAACATTTTTCTCTACTGCGGCATTCTAATTTTTTGCGATCCAATTAAACCATGTTAAAATTTTCAAAAAAAAAATTAAATTTTTTTTGGGATATTTACTTTTCTTTTGAGCGAAAATTTCTGACAATCTTGTAATTTTCTTCGTAGGTGGAAAGCCTTTTCTTATGCAAAAAGAGGGAAATTCTGTTTCTGGAAACTGTTGAGAATCTGAGAAATGCATTATTGGGAGTGATCTTTTATCTTTCGTATTAAAAAAATCACATATAACTTTTAAAAATTTTATCTAGATTCACAAGGTTAGGAGAATAAAATTTTCGGGATTGCGACCGCGTAGCTCTGCCGGTAGCTGCGCGGTACTTTCAATATTTAGCTCGTAAGTCGAGAAAATGAATTTTCTTGGAAAGATAAAGAACTGAAAAAAAATTGAACATTATGAAAATGCAAAACAGTAATACGCATTTTAGCAGTCTTTTCTTAAATTTCCACTGGAATGTCGAAAATTGAATTTGAAAAATTTTGTTTTAAAAAATCGGTTTCATGAAACTGCAAAATTCGAATATTTATTCGATTGGATAATAAACATTCAGTCTGCTGTTAACGTTTAGAAGTGGTCGAAGCAGTAATCCTTTCTGTCTAATGTTGACTAGTTATACCCACAGAAAACTCAAAAAAAGATAAAATGCCATTATGGTCCTTGAAAGTCTATCAACCAATGCCAAAGTTTTCACTGTTTTCTGATAGACGAAATTAGAAAACTTTGATACTAACTGAGTTGGGTACAAAAATGTGAAAAGCCTTTTCAGATACATAACGAAGAAATTCTGTTTCAGAGAACTGATGAGAATCTGAGAAATTAATTTTTTAGTTGCTTGTTAACTGTAGGTACAAAA</canonical>
            <polymorphic>ATTGAAAATGTGCATTATTTGAACTTTAAGTAAAACCAGGAAGTTTTGTTCAATGATAAAAAATTCGAAACAAATTTAACTGTTTTTATAAGAAGATATGAAAAGTATGGAAACATTTTTCTCTACTGCGGCATTCTAATTTTTTGCGATCCAATTAAACCATGTTAAAATTTTCAAAAAAAAAATTAAATTTTTTTTGGGATATTTACTTTTCTTTTGAGCGAAAATTTCTGACAATCTTGTAATTTTCTTCGTAGGTGGAAAGCCTTTTCTTATGCAAAAAGAGGGAAATTCTGTTTCTGGAAACTGTTGAGAATCTGAGAAATGCATTATTGGGAGTGATCTTTTATCTTTCGTATTAAAAAAATCACATATAACTTTTAAAAATTTTATCTAGATTCACAAGGTTAGGAGAATAAAATTTTCGGGATTGCGACCGCGTAGCTCTGCCGGTAGCTGCGCGGTACTTTCAATATTTAGCTCGTAAGTCGAGAAAATGMATTTTCTTGGAAAGATAAAGAACTGAAAAAAAATTGAACATTATGAAAATGCAAAACAGTAATACGCATTTTAGCAGTCTTTTCTTAAATTTCCACTGGAATGTCGAAAATTGAATTTGAAAAATTTTGTTTTAAAAAATCGGTTTCATGAAACTGCAAAATTCGAATATTTATTCGATTGGATAATAAACATTCAGTCTGCTGTTAACGTTTAGAAGTGGTCGAAGCAGTAATCCTTTCTGTCTAATGTTGACTAGTTATACCCACAGAAAACTCAAAAAAAGATAAAATGCCATTATGGTCCTTGAAAGTCTATCAACCAATGCCAAAGTTTTCACTGTTTTCTGATAGACGAAATTAGAAAACTTTGATACTAACTGAGTTGGGTACAAAAATGTGAAAAGCCTTTTCAGATACATAACGAAGAAATTCTGTTTCAGAGAACTGATGAGAATCTGAGAAATTAATTTTTTAGTTGCTTGTTAACTGTAGGTACAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>268 96 96 88 80 73 64 61 37 37 34 26 20 11 9</canonical_bands>
                <polymorphic_bands>268 168 96 96 73 64 61 37 37 34 26 20 11 9</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>196 96 80 72 65 61 56 46 37 37 35 34 34 32 21 18 16 15 15 11 9 5 5 4</canonical_bands>
                <polymorphic_bands>196 112 96 72 65 61 56 46 37 37 35 34 34 21 18 16 15 15 11 9 5 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGGGAGTGATCTTTTATCTTT</pcr_primer_p1>
		<pcr_primer_p2>AGACTGCTAAAATGCGTATTACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTGGGAGTGATCTTTTATCTTTCGTATTAAAAAAATCACATATAACTTTTAAAAATTTTATCTAGATTCACAAGGTTAGGAGAATAAAATTTTCGGGATTGCGACCGCGTAGCTCTGCCGGTAGCTGCGCGGTACTTTCAATATTTAGCTCGTAAGTCGAGAAAATGAATTTTCTTGGAAAGATAAAGAACTGAAAAAAAATTGAACATTATGAAAATGCAAAACAGTAATACGCATTTTAGCAGTCT</canonical_amplicon>
		<polymorphic_amplicon>ATTGGGAGTGATCTTTTATCTTTCGTATTAAAAAAATCACATATAACTTTTAAAAATTTTATCTAGATTCACAAGGTTAGGAGAATAAAATTTTCGGGATTGCGACCGCGTAGCTCTGCCGGTAGCTGCGCGGTACTTTCAATATTTAGCTCGTAAGTCGAGAAAATGMATTTTCTTGGAAAGATAAAGAACTGAAAAAAAATTGAACATTATGAAAATGCAAAACAGTAATACGCATTTTAGCAGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29661</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>115666</contig_pos>
        <strand></strand>
        <context>aagataagtt[T/C]ccccaaagtt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTAATCAGTTGATCATTTTTTACTATCTTTTACAAGAAATAAGATAAGTT</left_flank>
        <right_flank>CCCCAAAGTTGAACAATAATGGGGGGCTTCAAACGCTGGTAGGCCGTCAT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATTTATTAATACTTACGAGGATTAGTAGGAATTAAAATTAAAACTAGTGTTTTATGGTATTAGAGGAAAGGGAAAATAGGTTCGAGGTGTCTCAACCGCTGTTGGACCGCTCCTGACCCGTTCGTTTGGGAAAAAAACACGGAGAACCTCCAAGAGTTGCTTAAATACAGTAAGATATAATACTTTGATTTTTTCACTAAAAAAATAAAACTTCTGTTTCGTGGGGCTGTGATAATTTGAAACTGTGTGCTAATTTGATTTTTTTTTCGTGTCACAGAAACTGAATTGTAAGAATGTCACAGAAACTGAATTGTAAGAGTACATACGGGAAACACATAAATAGAATGGGCCTAAAACCGACAACTTTGAGCTGATATATCTCTTTTTTGTAAAAGATATCAAAAAATGGTCAACTGATAAAGTAATTTTGGTATCATGATAAACAGTTAATCAGTTGATCATTTTTTACTATCTTTTACAAGAAATAAGATAAGTTTCCCCAAAGTTGAACAATAATGGGGGGCTTCAAACGCTGGTAGGCCGTCATTGGTCCGTTCTTTTGAAAAAAAAAAACGGAAAAACACCCAAGAGCCCATAGGCTACAGTACCGTATAAAAATAAATCATGTTTTGACATTTCAACTGTAAAATTTTTTGTGTTTCTTGGGGCTGTGATAATTTCATATGCTGTAAAAACTGAACTCCATGCTTTTAGTTCAATTGCAGATTTGTTTTTTCCTTGTGCCTCGACATTTTCTTAAAGCGTCGAATTTGAAAAAAATGAATACAAAAGAATCAACGATCACATTGAAGATTGTTTATGAGCAAACGTTTTGAACAAACTTCATTGAAACTGCATTTGAAATTTGAAAATTAGTAACCGGACAAAAAGTGGAAAAAAGTCACTTTCACAGCCGTAAAAATGTAGTTTAGGATTCCCCGATTCATCTGAAATTTTAAGAGTATACTAAACAAAAATAGAGTTTTATTTTTGTAAT</canonical>
            <polymorphic>AATATTTATTAATACTTACGAGGATTAGTAGGAATTAAAATTAAAACTAGTGTTTTATGGTATTAGAGGAAAGGGAAAATAGGTTCGAGGTGTCTCAACCGCTGTTGGACCGCTCCTGACCCGTTCGTTTGGGAAAAAAACACGGAGAACCTCCAAGAGTTGCTTAAATACAGTAAGATATAATACTTTGATTTTTTCACTAAAAAAATAAAACTTCTGTTTCGTGGGGCTGTGATAATTTGAAACTGTGTGCTAATTTGATTTTTTTTTCGTGTCACAGAAACTGAATTGTAAGAATGTCACAGAAACTGAATTGTAAGAGTACATACGGGAAACACATAAATAGAATGGGCCTAAAACCGACAACTTTGAGCTGATATATCTCTTTTTTGTAAAAGATATCAAAAAATGGTCAACTGATAAAGTAATTTTGGTATCATGATAAACAGTTAATCAGTTGATCATTTTTTACTATCTTTTACAAGAAATAAGATAAGTTYCCCCAAAGTTGAACAATAATGGGGGGCTTCAAACGCTGGTAGGCCGTCATTGGTCCGTTCTTTTGAAAAAAAAAAACGGAAAAACACCCAAGAGCCCATAGGCTACAGTACCGTATAAAAATAAATCATGTTTTGACATTTCAACTGTAAAATTTTTTGTGTTTCTTGGGGCTGTGATAATTTCATATGCTGTAAAAACTGAACTCCATGCTTTTAGTTCAATTGCAGATTTGTTTTTTCCTTGTGCCTCGACATTTTCTTAAAGCGTCGAATTTGAAAAAAATGAATACAAAAGAATCAACGATCACATTGAAGATTGTTTATGAGCAAACGTTTTGAACAAACTTCATTGAAACTGCATTTGAAATTTGAAAATTAGTAACCGGACAAAAAGTGGAAAAAAGTCACTTTCACAGCCGTAAAAATGTAGTTTAGGATTCCCCGATTCATCTGAAATTTTAAGAGTATACTAAACAAAAATAGAGTTTTATTTTTGTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATAAATAGAATGGGCCTAAA</pcr_primer_p1>
		<pcr_primer_p2>TACTGTAGCCTATGGGCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>ACATAAATAGAATGGGCCTAAAACCGACAACTTTGAGCTGATATATCTCTTTTTTGTAAAAGATATCAAAAAATGGTCAACTGATAAAGTAATTTTGGTATCATGATAAACAGTTAATCAGTTGATCATTTTTTACTATCTTTTACAAGAAATAAGATAAGTTTCCCCAAAGTTGAACAATAATGGGGGGCTTCAAACGCTGGTAGGCCGTCATTGGTCCGTTCTTTTGAAAAAAAAAAACGGAAAAACACCCAAGAGCCCATAGGCTACAGTA</canonical_amplicon>
		<polymorphic_amplicon>ACATAAATAGAATGGGCCTAAAACCGACAACTTTGAGCTGATATATCTCTTTTTTGTAAAAGATATCAAAAAATGGTCAACTGATAAAGTAATTTTGGTATCATGATAAACAGTTAATCAGTTGATCATTTTTTACTATCTTTTACAAGAAATAAGATAAGTTYCCCCAAAGTTGAACAATAATGGGGGGCTTCAAACGCTGGTAGGCCGTCATTGGTCCGTTCTTTTGAAAAAAAAAAACGGAAAAACACCCAAGAGCCCATAGGCTACAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29662</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>115681</contig_pos>
        <strand></strand>
        <context>aaagttgaac[A/G]wtaatggggg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTACTATCTTTTACAAGAAATAAGATAAGTTTCCCCAAAGTTGAAC</left_flank>
        <right_flank>ATAATGGGGGGCTTCAAACGCTGGTAGGCCGTCATTGGTCCGTTCTTTTG</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTACGAGGATTAGTAGGAATTAAAATTAAAACTAGTGTTTTATGGTATTAGAGGAAAGGGAAAATAGGTTCGAGGTGTCTCAACCGCTGTTGGACCGCTCCTGACCCGTTCGTTTGGGAAAAAAACACGGAGAACCTCCAAGAGTTGCTTAAATACAGTAAGATATAATACTTTGATTTTTTCACTAAAAAAATAAAACTTCTGTTTCGTGGGGCTGTGATAATTTGAAACTGTGTGCTAATTTGATTTTTTTTTCGTGTCACAGAAACTGAATTGTAAGAATGTCACAGAAACTGAATTGTAAGAGTACATACGGGAAACACATAAATAGAATGGGCCTAAAACCGACAACTTTGAGCTGATATATCTCTTTTTTGTAAAAGATATCAAAAAATGGTCAACTGATAAAGTAATTTTGGTATCATGATAAACAGTTAATCAGTTGATCATTTTTTACTATCTTTTACAAGAAATAAGATAAGTTTCCCCAAAGTTGAACAATAATGGGGGGCTTCAAACGCTGGTAGGCCGTCATTGGTCCGTTCTTTTGAAAAAAAAAAACGGAAAAACACCCAAGAGCCCATAGGCTACAGTACCGTATAAAAATAAATCATGTTTTGACATTTCAACTGTAAAATTTTTTGTGTTTCTTGGGGCTGTGATAATTTCATATGCTGTAAAAACTGAACTCCATGCTTTTAGTTCAATTGCAGATTTGTTTTTTCCTTGTGCCTCGACATTTTCTTAAAGCGTCGAATTTGAAAAAAATGAATACAAAAGAATCAACGATCACATTGAAGATTGTTTATGAGCAAACGTTTTGAACAAACTTCATTGAAACTGCATTTGAAATTTGAAAATTAGTAACCGGACAAAAAGTGGAAAAAAGTCACTTTCACAGCCGTAAAAATGTAGTTTAGGATTCCCCGATTCATCTGAAATTTTAAGAGTATACTAAACAAAAATAGAGTTTTATTTTTGTAATGGACAACTCTTTTGT</canonical>
            <polymorphic>TTACGAGGATTAGTAGGAATTAAAATTAAAACTAGTGTTTTATGGTATTAGAGGAAAGGGAAAATAGGTTCGAGGTGTCTCAACCGCTGTTGGACCGCTCCTGACCCGTTCGTTTGGGAAAAAAACACGGAGAACCTCCAAGAGTTGCTTAAATACAGTAAGATATAATACTTTGATTTTTTCACTAAAAAAATAAAACTTCTGTTTCGTGGGGCTGTGATAATTTGAAACTGTGTGCTAATTTGATTTTTTTTTCGTGTCACAGAAACTGAATTGTAAGAATGTCACAGAAACTGAATTGTAAGAGTACATACGGGAAACACATAAATAGAATGGGCCTAAAACCGACAACTTTGAGCTGATATATCTCTTTTTTGTAAAAGATATCAAAAAATGGTCAACTGATAAAGTAATTTTGGTATCATGATAAACAGTTAATCAGTTGATCATTTTTTACTATCTTTTACAAGAAATAAGATAAGTTTCCCCAAAGTTGAACRATAATGGGGGGCTTCAAACGCTGGTAGGCCGTCATTGGTCCGTTCTTTTGAAAAAAAAAAACGGAAAAACACCCAAGAGCCCATAGGCTACAGTACCGTATAAAAATAAATCATGTTTTGACATTTCAACTGTAAAATTTTTTGTGTTTCTTGGGGCTGTGATAATTTCATATGCTGTAAAAACTGAACTCCATGCTTTTAGTTCAATTGCAGATTTGTTTTTTCCTTGTGCCTCGACATTTTCTTAAAGCGTCGAATTTGAAAAAAATGAATACAAAAGAATCAACGATCACATTGAAGATTGTTTATGAGCAAACGTTTTGAACAAACTTCATTGAAACTGCATTTGAAATTTGAAAATTAGTAACCGGACAAAAAGTGGAAAAAAGTCACTTTCACAGCCGTAAAAATGTAGTTTAGGATTCCCCGATTCATCTGAAATTTTAAGAGTATACTAAACAAAAATAGAGTTTTATTTTTGTAATGGACAACTCTTTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATAAATAGAATGGGCCTAAA</pcr_primer_p1>
		<pcr_primer_p2>TACTGTAGCCTATGGGCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>ACATAAATAGAATGGGCCTAAAACCGACAACTTTGAGCTGATATATCTCTTTTTTGTAAAAGATATCAAAAAATGGTCAACTGATAAAGTAATTTTGGTATCATGATAAACAGTTAATCAGTTGATCATTTTTTACTATCTTTTACAAGAAATAAGATAAGTTTCCCCAAAGTTGAACAATAATGGGGGGCTTCAAACGCTGGTAGGCCGTCATTGGTCCGTTCTTTTGAAAAAAAAAAACGGAAAAACACCCAAGAGCCCATAGGCTACAGTA</canonical_amplicon>
		<polymorphic_amplicon>ACATAAATAGAATGGGCCTAAAACCGACAACTTTGAGCTGATATATCTCTTTTTTGTAAAAGATATCAAAAAATGGTCAACTGATAAAGTAATTTTGGTATCATGATAAACAGTTAATCAGTTGATCATTTTTTACTATCTTTTACAAGAAATAAGATAAGTTTCCCCAAAGTTGAACRATAATGGGGGGCTTCAAACGCTGGTAGGCCGTCATTGGTCCGTTCTTTTGAAAAAAAAAAACGGAAAAACACCCAAGAGCCCATAGGCTACAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29663</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>115682</contig_pos>
        <strand></strand>
        <context>aagttgaacr[A/T]taatgggggg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTACTATCTTTTACAAGAAATAAGATAAGTTTCCCCAAAGTTGAACA</left_flank>
        <right_flank>TAATGGGGGGCTTCAAACGCTGGTAGGCCGTCATTGGTCCGTTCTTTTGA</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACGAGGATTAGTAGGAATTAAAATTAAAACTAGTGTTTTATGGTATTAGAGGAAAGGGAAAATAGGTTCGAGGTGTCTCAACCGCTGTTGGACCGCTCCTGACCCGTTCGTTTGGGAAAAAAACACGGAGAACCTCCAAGAGTTGCTTAAATACAGTAAGATATAATACTTTGATTTTTTCACTAAAAAAATAAAACTTCTGTTTCGTGGGGCTGTGATAATTTGAAACTGTGTGCTAATTTGATTTTTTTTTCGTGTCACAGAAACTGAATTGTAAGAATGTCACAGAAACTGAATTGTAAGAGTACATACGGGAAACACATAAATAGAATGGGCCTAAAACCGACAACTTTGAGCTGATATATCTCTTTTTTGTAAAAGATATCAAAAAATGGTCAACTGATAAAGTAATTTTGGTATCATGATAAACAGTTAATCAGTTGATCATTTTTTACTATCTTTTACAAGAAATAAGATAAGTTTCCCCAAAGTTGAACAATAATGGGGGGCTTCAAACGCTGGTAGGCCGTCATTGGTCCGTTCTTTTGAAAAAAAAAAACGGAAAAACACCCAAGAGCCCATAGGCTACAGTACCGTATAAAAATAAATCATGTTTTGACATTTCAACTGTAAAATTTTTTGTGTTTCTTGGGGCTGTGATAATTTCATATGCTGTAAAAACTGAACTCCATGCTTTTAGTTCAATTGCAGATTTGTTTTTTCCTTGTGCCTCGACATTTTCTTAAAGCGTCGAATTTGAAAAAAATGAATACAAAAGAATCAACGATCACATTGAAGATTGTTTATGAGCAAACGTTTTGAACAAACTTCATTGAAACTGCATTTGAAATTTGAAAATTAGTAACCGGACAAAAAGTGGAAAAAAGTCACTTTCACAGCCGTAAAAATGTAGTTTAGGATTCCCCGATTCATCTGAAATTTTAAGAGTATACTAAACAAAAATAGAGTTTTATTTTTGTAATGGACAACTCTTTTGTG</canonical>
            <polymorphic>TACGAGGATTAGTAGGAATTAAAATTAAAACTAGTGTTTTATGGTATTAGAGGAAAGGGAAAATAGGTTCGAGGTGTCTCAACCGCTGTTGGACCGCTCCTGACCCGTTCGTTTGGGAAAAAAACACGGAGAACCTCCAAGAGTTGCTTAAATACAGTAAGATATAATACTTTGATTTTTTCACTAAAAAAATAAAACTTCTGTTTCGTGGGGCTGTGATAATTTGAAACTGTGTGCTAATTTGATTTTTTTTTCGTGTCACAGAAACTGAATTGTAAGAATGTCACAGAAACTGAATTGTAAGAGTACATACGGGAAACACATAAATAGAATGGGCCTAAAACCGACAACTTTGAGCTGATATATCTCTTTTTTGTAAAAGATATCAAAAAATGGTCAACTGATAAAGTAATTTTGGTATCATGATAAACAGTTAATCAGTTGATCATTTTTTACTATCTTTTACAAGAAATAAGATAAGTTTCCCCAAAGTTGAACAWTAATGGGGGGCTTCAAACGCTGGTAGGCCGTCATTGGTCCGTTCTTTTGAAAAAAAAAAACGGAAAAACACCCAAGAGCCCATAGGCTACAGTACCGTATAAAAATAAATCATGTTTTGACATTTCAACTGTAAAATTTTTTGTGTTTCTTGGGGCTGTGATAATTTCATATGCTGTAAAAACTGAACTCCATGCTTTTAGTTCAATTGCAGATTTGTTTTTTCCTTGTGCCTCGACATTTTCTTAAAGCGTCGAATTTGAAAAAAATGAATACAAAAGAATCAACGATCACATTGAAGATTGTTTATGAGCAAACGTTTTGAACAAACTTCATTGAAACTGCATTTGAAATTTGAAAATTAGTAACCGGACAAAAAGTGGAAAAAAGTCACTTTCACAGCCGTAAAAATGTAGTTTAGGATTCCCCGATTCATCTGAAATTTTAAGAGTATACTAAACAAAAATAGAGTTTTATTTTTGTAATGGACAACTCTTTTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATAAATAGAATGGGCCTAAA</pcr_primer_p1>
		<pcr_primer_p2>TACTGTAGCCTATGGGCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>ACATAAATAGAATGGGCCTAAAACCGACAACTTTGAGCTGATATATCTCTTTTTTGTAAAAGATATCAAAAAATGGTCAACTGATAAAGTAATTTTGGTATCATGATAAACAGTTAATCAGTTGATCATTTTTTACTATCTTTTACAAGAAATAAGATAAGTTTCCCCAAAGTTGAACAATAATGGGGGGCTTCAAACGCTGGTAGGCCGTCATTGGTCCGTTCTTTTGAAAAAAAAAAACGGAAAAACACCCAAGAGCCCATAGGCTACAGTA</canonical_amplicon>
		<polymorphic_amplicon>ACATAAATAGAATGGGCCTAAAACCGACAACTTTGAGCTGATATATCTCTTTTTTGTAAAAGATATCAAAAAATGGTCAACTGATAAAGTAATTTTGGTATCATGATAAACAGTTAATCAGTTGATCATTTTTTACTATCTTTTACAAGAAATAAGATAAGTTTCCCCAAAGTTGAACAWTAATGGGGGGCTTCAAACGCTGGTAGGCCGTCATTGGTCCGTTCTTTTGAAAAAAAAAAACGGAAAAACACCCAAGAGCCCATAGGCTACAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29664</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>161202</contig_pos>
        <strand>+</strand>
        <context>acaaatGATA[A/C]AATTCTGAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGAAGCTCTATTTTTGTTTAGTATACTCTGAAATTTTCAGACAAATGATA</left_flank>
        <right_flank>AATTCTGAATTACTTTCGTAGGATCACTTGGCAATTTTCAACTAAAAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGAATAGAGTGTTAATTTTGTAGTTCACAGCTGTTTTGTACAAATTCATCCAATAGAGATATACTGCTTCAAAGTGTCTACAACTCCTATTTCTGGAAGTTTTGACACTTTATTCGCTAAAAGCGCAATATCTCATTTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTAACGGTGTACAACGCCTAATGTCACTCTGCGTACAGCGGTCGTCCTCGCCTTTATGTATGCAATCAGGCGCCCGATCCAGTTTCGCCCGCATGGCTCAGTCGGTAGCGGCGCCGCCCCTTCAATACTCGCCTCGACAAGTTTAACTCCTCGAGGGGCATATTTAAACAGAATTTCGAGAACATTATTTTTTCATGACCCCCCACCTTCAAAAAAAAATTTTCCGGAAAAAGGTGTCAACTACAAAATTGAAGCTCTATTTTTGTTTAGTATACTCTGAAATTTTCAGACAAATGATACAATTCTGAATTACTTTCGTAGGATCACTTGGCAATTTTCAACTAAAAATAGTTAGAATTAAAAAAATTTTGAATACATGGCGATAGGAAAAATTAACTATCAGAAAATCGGGTGAAGATGACGAAATTACGAAACAGTTAAAAAATTATTGCATTCTGTTTCCCGACTGTGTTTTATGAAATTCATTAGATGAATAATATTATGCAGTGTTTGTTGCAAATAGTTCGGAATTTTTAAATTTTTCTGAAAACTTTAGAGTGTACTAAACAAAAATAATTCCATTTTGTAGTTGACAAATTTATCGTACCAATTTGTCCAAATGAGATATATCGCTTCAATGTGTCTACAGCTGCTATTTCTGGAAAAATTCACTCATGGTTTGTTTGAAGCGGTATGTCTCATTCAGATGAACTTTTAGAGAAAAATTGTCAACTACAAAATTGAAGCTCTATTTTTGTTCAGTATACTCTGAAAAATTCAGGCAAATGGGAAAGGTCAAG</canonical>
            <polymorphic>CAAGAATAGAGTGTTAATTTTGTAGTTCACAGCTGTTTTGTACAAATTCATCCAATAGAGATATACTGCTTCAAAGTGTCTACAACTCCTATTTCTGGAAGTTTTGACACTTTATTCGCTAAAAGCGCAATATCTCATTTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTAACGGTGTACAACGCCTAATGTCACTCTGCGTACAGCGGTCGTCCTCGCCTTTATGTATGCAATCAGGCGCCCGATCCAGTTTCGCCCGCATGGCTCAGTCGGTAGCGGCGCCGCCCCTTCAATACTCGCCTCGACAAGTTTAACTCCTCGAGGGGCATATTTAAACAGAATTTCGAGAACATTATTTTTTCATGACCCCCCACCTTCAAAAAAAAATTTTCCGGAAAAAGGTGTCAACTACAAAATTGAAGCTCTATTTTTGTTTAGTATACTCTGAAATTTTCAGACAAATGATAMAATTCTGAATTACTTTCGTAGGATCACTTGGCAATTTTCAACTAAAAATAGTTAGAATTAAAAAAATTTTGAATACATGGCGATAGGAAAAATTAACTATCAGAAAATCGGGTGAAGATGACGAAATTACGAAACAGTTAAAAAATTATTGCATTCTGTTTCCCGACTGTGTTTTATGAAATTCATTAGATGAATAATATTATGCAGTGTTTGTTGCAAATAGTTCGGAATTTTTAAATTTTTCTGAAAACTTTAGAGTGTACTAAACAAAAATAATTCCATTTTGTAGTTGACAAATTTATCGTACCAATTTGTCCAAATGAGATATATCGCTTCAATGTGTCTACAGCTGCTATTTCTGGAAAAATTCACTCATGGTTTGTTTGAAGCGGTATGTCTCATTCAGATGAACTTTTAGAGAAAAATTGTCAACTACAAAATTGAAGCTCTATTTTTGTTCAGTATACTCTGAAAAATTCAGGCAAATGGGAAAGGTCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGCCTTTATGTATGCAATC</pcr_primer_p1>
		<pcr_primer_p2>CTATCGCCATGTATTCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>339</pcr_amplicon_size>
		<canonical_amplicon>TCGCCTTTATGTATGCAATCAGGCGCCCGATCCAGTTTCGCCCGCATGGCTCAGTCGGTAGCGGCGCCGCCCCTTCAATACTCGCCTCGACAAGTTTAACTCCTCGAGGGGCATATTTAAACAGAATTTCGAGAACATTATTTTTTCATGACCCCCCACCTTCAAAAAAAAATTTTCCGGAAAAAGGTGTCAACTACAAAATTGAAGCTCTATTTTTGTTTAGTATACTCTGAAATTTTCAGACAAATGATACAATTCTGAATTACTTTCGTAGGATCACTTGGCAATTTTCAACTAAAAATAGTTAGAATTAAAAAAATTTTGAATACATGGCGATAG</canonical_amplicon>
		<polymorphic_amplicon>TCGCCTTTATGTATGCAATCAGGCGCCCGATCCAGTTTCGCCCGCATGGCTCAGTCGGTAGCGGCGCCGCCCCTTCAATACTCGCCTCGACAAGTTTAACTCCTCGAGGGGCATATTTAAACAGAATTTCGAGAACATTATTTTTTCATGACCCCCCACCTTCAAAAAAAAATTTTCCGGAAAAAGGTGTCAACTACAAAATTGAAGCTCTATTTTTGTTTAGTATACTCTGAAATTTTCAGACAAATGATAMAATTCTGAATTACTTTCGTAGGATCACTTGGCAATTTTCAACTAAAAATAGTTAGAATTAAAAAAATTTTGAATACATGGCGATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29665</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>161265</contig_pos>
        <strand>+</strand>
        <context>TAGAATTAAA[A/C]AAATTTTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTTCGTAGGATCACTTGGCAATTTTCAACTAAAAATAGTTAGAATTAAA</left_flank>
        <right_flank>AAATTTTGAATACATGGCGATAGGAAAAATTAACTATCAGAAAATCGGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTGCTTCAAAGTGTCTACAACTCCTATTTCTGGAAGTTTTGACACTTTATTCGCTAAAAGCGCAATATCTCATTTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTAACGGTGTACAACGCCTAATGTCACTCTGCGTACAGCGGTCGTCCTCGCCTTTATGTATGCAATCAGGCGCCCGATCCAGTTTCGCCCGCATGGCTCAGTCGGTAGCGGCGCCGCCCCTTCAATACTCGCCTCGACAAGTTTAACTCCTCGAGGGGCATATTTAAACAGAATTTCGAGAACATTATTTTTTCATGACCCCCCACCTTCAAAAAAAAATTTTCCGGAAAAAGGTGTCAACTACAAAATTGAAGCTCTATTTTTGTTTAGTATACTCTGAAATTTTCAGACAAATGATACAATTCTGAATTACTTTCGTAGGATCACTTGGCAATTTTCAACTAAAAATAGTTAGAATTAAAAAAATTTTGAATACATGGCGATAGGAAAAATTAACTATCAGAAAATCGGGTGAAGATGACGAAATTACGAAACAGTTAAAAAATTATTGCATTCTGTTTCCCGACTGTGTTTTATGAAATTCATTAGATGAATAATATTATGCAGTGTTTGTTGCAAATAGTTCGGAATTTTTAAATTTTTCTGAAAACTTTAGAGTGTACTAAACAAAAATAATTCCATTTTGTAGTTGACAAATTTATCGTACCAATTTGTCCAAATGAGATATATCGCTTCAATGTGTCTACAGCTGCTATTTCTGGAAAAATTCACTCATGGTTTGTTTGAAGCGGTATGTCTCATTCAGATGAACTTTTAGAGAAAAATTGTCAACTACAAAATTGAAGCTCTATTTTTGTTCAGTATACTCTGAAAAATTCAGGCAAATGGGAAAGGTCAAGGATGCATTGCAATATCAAACCACAGAAGGGAACCAAATTGAGAAACTGGCAAAACATTAATAA</canonical>
            <polymorphic>TACTGCTTCAAAGTGTCTACAACTCCTATTTCTGGAAGTTTTGACACTTTATTCGCTAAAAGCGCAATATCTCATTTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTAACGGTGTACAACGCCTAATGTCACTCTGCGTACAGCGGTCGTCCTCGCCTTTATGTATGCAATCAGGCGCCCGATCCAGTTTCGCCCGCATGGCTCAGTCGGTAGCGGCGCCGCCCCTTCAATACTCGCCTCGACAAGTTTAACTCCTCGAGGGGCATATTTAAACAGAATTTCGAGAACATTATTTTTTCATGACCCCCCACCTTCAAAAAAAAATTTTCCGGAAAAAGGTGTCAACTACAAAATTGAAGCTCTATTTTTGTTTAGTATACTCTGAAATTTTCAGACAAATGATACAATTCTGAATTACTTTCGTAGGATCACTTGGCAATTTTCAACTAAAAATAGTTAGAATTAAAMAAATTTTGAATACATGGCGATAGGAAAAATTAACTATCAGAAAATCGGGTGAAGATGACGAAATTACGAAACAGTTAAAAAATTATTGCATTCTGTTTCCCGACTGTGTTTTATGAAATTCATTAGATGAATAATATTATGCAGTGTTTGTTGCAAATAGTTCGGAATTTTTAAATTTTTCTGAAAACTTTAGAGTGTACTAAACAAAAATAATTCCATTTTGTAGTTGACAAATTTATCGTACCAATTTGTCCAAATGAGATATATCGCTTCAATGTGTCTACAGCTGCTATTTCTGGAAAAATTCACTCATGGTTTGTTTGAAGCGGTATGTCTCATTCAGATGAACTTTTAGAGAAAAATTGTCAACTACAAAATTGAAGCTCTATTTTTGTTCAGTATACTCTGAAAAATTCAGGCAAATGGGAAAGGTCAAGGATGCATTGCAATATCAAACCACAGAAGGGAACCAAATTGAGAAACTGGCAAAACATTAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGAATTACTTTCGTAGGATCA</pcr_primer_p1>
		<pcr_primer_p2>TAACTGTTTCGTAATTTCGTCAT</pcr_primer_p2>
		<pcr_amplicon_size>137</pcr_amplicon_size>
		<canonical_amplicon>TCTGAATTACTTTCGTAGGATCACTTGGCAATTTTCAACTAAAAATAGTTAGAATTAAAAAAATTTTGAATACATGGCGATAGGAAAAATTAACTATCAGAAAATCGGGTGAAGATGACGAAATTACGAAACAGTTA</canonical_amplicon>
		<polymorphic_amplicon>TCTGAATTACTTTCGTAGGATCACTTGGCAATTTTCAACTAAAAATAGTTAGAATTAAAMAAATTTTGAATACATGGCGATAGGAAAAATTAACTATCAGAAAATCGGGTGAAGATGACGAAATTACGAAACAGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29666</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>161397</contig_pos>
        <strand>+</strand>
        <context>ATTAGATGAA[A/T]AATATTATGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTATTGCATTCTGTTTCCCGACTGTGTTTTATGAAATTCATTAGATGAA</left_flank>
        <right_flank>AATATTATGCAGTGTTTGTTGCAAATAGTTCGGAATTTTTAAATTTTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACCGTAACGGTGTACAACGCCTAATGTCACTCTGCGTACAGCGGTCGTCCTCGCCTTTATGTATGCAATCAGGCGCCCGATCCAGTTTCGCCCGCATGGCTCAGTCGGTAGCGGCGCCGCCCCTTCAATACTCGCCTCGACAAGTTTAACTCCTCGAGGGGCATATTTAAACAGAATTTCGAGAACATTATTTTTTCATGACCCCCCACCTTCAAAAAAAAATTTTCCGGAAAAAGGTGTCAACTACAAAATTGAAGCTCTATTTTTGTTTAGTATACTCTGAAATTTTCAGACAAATGATACAATTCTGAATTACTTTCGTAGGATCACTTGGCAATTTTCAACTAAAAATAGTTAGAATTAAAAAAATTTTGAATACATGGCGATAGGAAAAATTAACTATCAGAAAATCGGGTGAAGATGACGAAATTACGAAACAGTTAAAAAATTATTGCATTCTGTTTCCCGACTGTGTTTTATGAAATTCATTAGATGAATAATATTATGCAGTGTTTGTTGCAAATAGTTCGGAATTTTTAAATTTTTCTGAAAACTTTAGAGTGTACTAAACAAAAATAATTCCATTTTGTAGTTGACAAATTTATCGTACCAATTTGTCCAAATGAGATATATCGCTTCAATGTGTCTACAGCTGCTATTTCTGGAAAAATTCACTCATGGTTTGTTTGAAGCGGTATGTCTCATTCAGATGAACTTTTAGAGAAAAATTGTCAACTACAAAATTGAAGCTCTATTTTTGTTCAGTATACTCTGAAAAATTCAGGCAAATGGGAAAGGTCAAGGATGCATTGCAATATCAAACCACAGAAGGGAACCAAATTGAGAAACTGGCAAAACATTAATAATTCAATTTCTTCTGTTTCTCGAATGTGTCGAATGAACATTATTGAAAGAATATGCAGTAAGTCCGGGACATCGTTCAAGATAAAATAACAAAGAAATAAGTACTTTCTCATTAAAAAATTTCAAACAAGATT</canonical>
            <polymorphic>CTACCGTAACGGTGTACAACGCCTAATGTCACTCTGCGTACAGCGGTCGTCCTCGCCTTTATGTATGCAATCAGGCGCCCGATCCAGTTTCGCCCGCATGGCTCAGTCGGTAGCGGCGCCGCCCCTTCAATACTCGCCTCGACAAGTTTAACTCCTCGAGGGGCATATTTAAACAGAATTTCGAGAACATTATTTTTTCATGACCCCCCACCTTCAAAAAAAAATTTTCCGGAAAAAGGTGTCAACTACAAAATTGAAGCTCTATTTTTGTTTAGTATACTCTGAAATTTTCAGACAAATGATACAATTCTGAATTACTTTCGTAGGATCACTTGGCAATTTTCAACTAAAAATAGTTAGAATTAAAAAAATTTTGAATACATGGCGATAGGAAAAATTAACTATCAGAAAATCGGGTGAAGATGACGAAATTACGAAACAGTTAAAAAATTATTGCATTCTGTTTCCCGACTGTGTTTTATGAAATTCATTAGATGAAWAATATTATGCAGTGTTTGTTGCAAATAGTTCGGAATTTTTAAATTTTTCTGAAAACTTTAGAGTGTACTAAACAAAAATAATTCCATTTTGTAGTTGACAAATTTATCGTACCAATTTGTCCAAATGAGATATATCGCTTCAATGTGTCTACAGCTGCTATTTCTGGAAAAATTCACTCATGGTTTGTTTGAAGCGGTATGTCTCATTCAGATGAACTTTTAGAGAAAAATTGTCAACTACAAAATTGAAGCTCTATTTTTGTTCAGTATACTCTGAAAAATTCAGGCAAATGGGAAAGGTCAAGGATGCATTGCAATATCAAACCACAGAAGGGAACCAAATTGAGAAACTGGCAAAACATTAATAATTCAATTTCTTCTGTTTCTCGAATGTGTCGAATGAACATTATTGAAAGAATATGCAGTAAGTCCGGGACATCGTTCAAGATAAAATAACAAAGAAATAAGTACTTTCTCATTAAAAAATTTCAAACAAGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAAATTACGAAACAGTTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TCCCTTCTGTGGTTTGATATT</pcr_primer_p2>
		<pcr_amplicon_size>410</pcr_amplicon_size>
		<canonical_amplicon>CGAAATTACGAAACAGTTAAAAAATTATTGCATTCTGTTTCCCGACTGTGTTTTATGAAATTCATTAGATGAATAATATTATGCAGTGTTTGTTGCAAATAGTTCGGAATTTTTAAATTTTTCTGAAAACTTTAGAGTGTACTAAACAAAAATAATTCCATTTTGTAGTTGACAAATTTATCGTACCAATTTGTCCAAATGAGATATATCGCTTCAATGTGTCTACAGCTGCTATTTCTGGAAAAATTCACTCATGGTTTGTTTGAAGCGGTATGTCTCATTCAGATGAACTTTTAGAGAAAAATTGTCAACTACAAAATTGAAGCTCTATTTTTGTTCAGTATACTCTGAAAAATTCAGGCAAATGGGAAAGGTCAAGGATGCATTGCAATATCAAACCACAGAAGGGA</canonical_amplicon>
		<polymorphic_amplicon>CGAAATTACGAAACAGTTAAAAAATTATTGCATTCTGTTTCCCGACTGTGTTTTATGAAATTCATTAGATGAAWAATATTATGCAGTGTTTGTTGCAAATAGTTCGGAATTTTTAAATTTTTCTGAAAACTTTAGAGTGTACTAAACAAAAATAATTCCATTTTGTAGTTGACAAATTTATCGTACCAATTTGTCCAAATGAGATATATCGCTTCAATGTGTCTACAGCTGCTATTTCTGGAAAAATTCACTCATGGTTTGTTTGAAGCGGTATGTCTCATTCAGATGAACTTTTAGAGAAAAATTGTCAACTACAAAATTGAAGCTCTATTTTTGTTCAGTATACTCTGAAAAATTCAGGCAAATGGGAAAGGTCAAGGATGCATTGCAATATCAAACCACAGAAGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29667</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>169030</contig_pos>
        <strand>+</strand>
        <context>AAGCTGTCGA[A/T]TTTTTTTCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGGGACGGATTTTTGGGATTTTTCACGAAATTAACTATACAAGCTGTCGA</left_flank>
        <right_flank>TTTTTTTCAGTTTTCAGTTTCAAATGATCCTTAATTTGGAACCAAGAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCTAAGGGCTTTCAGCGTATTTTTCGATGCGTTTTTCTCAATGAAGGAATTTTTTTTTGAATTTTTTCTTTATTTTTATGTCAATCTACATGCATTTCTGCACATTTTGACGCAATAAAAAATTTCACCGTACACCACCTTTAAATAATAATAATCGAATTTTAACTTTTGAAATTTCTGAATATCCTTTAAGAGATAGCTCATTTGACCCTATCTCGTTTCCTGGTTGAACTATAAAAAAAAAGTTCAACTAATGAAATGTTTCTGATATCAAACCAAACATCTTTGTCCCTTTTCAAATCAATTAAACTCCGCCCACTTTTTTTAAAAACCTTATTTTGAGATCCAAACTTTTTTTTCTGAAAATTCGGGAATAATTGAGAAATAGGAATTTTTGGGATCCAAAAAAGCATTTTTCTTTCGGGAAATTTTCGAAGTTTGTGATTTTTGGGACGGATTTTTGGGATTTTTCACGAAATTAACTATACAAGCTGTCGATTTTTTTTCAGTTTTCAGTTTCAAATGATCCTTAATTTGGAACCAAGAACATGTTCTTCAATCTCATTCAGAAAGTTTCCTTTAAGAAAAATTCGAAAATTTTACAATTAGATTGAAAAAATTCGAATTTCAAGAAAAATTTTTTTTGCAGTTTCAGTTTACCCATAATTCTATTTAAATTCAGAATGTTTTTCATTATTCGACGGTATTGGAACATTAAAAAAAATGGTTATGATTAAAACTTCAGATTCCAAAAAAAAAATATTCCAAAAAATTCAAAAAAAATTCAAAATTATCGAAGAAACAAAAAAATTTCGTTTCAGTTTGTCTATAATTCTGAGAACAGTGTGTTTACGTCGATTAAAAACCTTTTCCGCTTCACACAATTCGAGAAAACATCTGTTCATCGATCCTATGAAAATTTTGATTTTTCTAGAGATTTCTATGTTCTAAACACTTAAAGGGGGATCACCATTAAAGTTATCAAAAAGTTACTTAACG</canonical>
            <polymorphic>CCCTAAGGGCTTTCAGCGTATTTTTCGATGCGTTTTTCTCAATGAAGGAATTTTTTTTTGAATTTTTTCTTTATTTTTATGTCAATCTACATGCATTTCTGCACATTTTGACGCAATAAAAAATTTCACCGTACACCACCTTTAAATAATAATAATCGAATTTTAACTTTTGAAATTTCTGAATATCCTTTAAGAGATAGCTCATTTGACCCTATCTCGTTTCCTGGTTGAACTATAAAAAAAAAGTTCAACTAATGAAATGTTTCTGATATCAAACCAAACATCTTTGTCCCTTTTCAAATCAATTAAACTCCGCCCACTTTTTTTAAAAACCTTATTTTGAGATCCAAACTTTTTTTTCTGAAAATTCGGGAATAATTGAGAAATAGGAATTTTTGGGATCCAAAAAAGCATTTTTCTTTCGGGAAATTTTCGAAGTTTGTGATTTTTGGGACGGATTTTTGGGATTTTTCACGAAATTAACTATACAAGCTGTCGAWTTTTTTTCAGTTTTCAGTTTCAAATGATCCTTAATTTGGAACCAAGAACATGTTCTTCAATCTCATTCAGAAAGTTTCCTTTAAGAAAAATTCGAAAATTTTACAATTAGATTGAAAAAATTCGAATTTCAAGAAAAATTTTTTTTGCAGTTTCAGTTTACCCATAATTCTATTTAAATTCAGAATGTTTTTCATTATTCGACGGTATTGGAACATTAAAAAAAATGGTTATGATTAAAACTTCAGATTCCAAAAAAAAAATATTCCAAAAAATTCAAAAAAAATTCAAAATTATCGAAGAAACAAAAAAATTTCGTTTCAGTTTGTCTATAATTCTGAGAACAGTGTGTTTACGTCGATTAAAAACCTTTTCCGCTTCACACAATTCGAGAAAACATCTGTTCATCGATCCTATGAAAATTTTGATTTTTCTAGAGATTTCTATGTTCTAAACACTTAAAGGGGGATCACCATTAAAGTTATCAAAAAGTTACTTAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAAAAACCTTATTTTGAGATCC</pcr_primer_p1>
		<pcr_primer_p2>CTTTCTGAATGAGATTGAAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTAAAAACCTTATTTTGAGATCCAAACTTTTTTTTCTGAAAATTCGGGAATAATTGAGAAATAGGAATTTTTGGGATCCAAAAAAGCATTTTTCTTTCGGGAAATTTTCGAAGTTTGTGATTTTTGGGACGGATTTTTGGGATTTTTCACGAAATTAACTATACAAGCTGTCGATTTTTTTTCAGTTTTCAGTTTCAAATGATCCTTAATTTGGAACCAAGAACATGTTCTTCAATCTCATTCAGAAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTAAAAACCTTATTTTGAGATCCAAACTTTTTTTTCTGAAAATTCGGGAATAATTGAGAAATAGGAATTTTTGGGATCCAAAAAAGCATTTTTCTTTCGGGAAATTTTCGAAGTTTGTGATTTTTGGGACGGATTTTTGGGATTTTTCACGAAATTAACTATACAAGCTGTCGAWTTTTTTTCAGTTTTCAGTTTCAAATGATCCTTAATTTGGAACCAAGAACATGTTCTTCAATCTCATTCAGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29668</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>169078</contig_pos>
        <strand>+</strand>
        <context>GGAACCAAGA[A/T]CATGTTCTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATTTTTTTTCAGTTTTCAGTTTCAAATGATCCTTAATTTGGAACCAAGA</left_flank>
        <right_flank>CATGTTCTTCAATCTCATTCAGAAAGTTTCCTTTAAGAAAAATTCGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTTTTTTGAATTTTTTCTTTATTTTTATGTCAATCTACATGCATTTCTGCACATTTTGACGCAATAAAAAATTTCACCGTACACCACCTTTAAATAATAATAATCGAATTTTAACTTTTGAAATTTCTGAATATCCTTTAAGAGATAGCTCATTTGACCCTATCTCGTTTCCTGGTTGAACTATAAAAAAAAAGTTCAACTAATGAAATGTTTCTGATATCAAACCAAACATCTTTGTCCCTTTTCAAATCAATTAAACTCCGCCCACTTTTTTTAAAAACCTTATTTTGAGATCCAAACTTTTTTTTCTGAAAATTCGGGAATAATTGAGAAATAGGAATTTTTGGGATCCAAAAAAGCATTTTTCTTTCGGGAAATTTTCGAAGTTTGTGATTTTTGGGACGGATTTTTGGGATTTTTCACGAAATTAACTATACAAGCTGTCGATTTTTTTTCAGTTTTCAGTTTCAAATGATCCTTAATTTGGAACCAAGAACATGTTCTTCAATCTCATTCAGAAAGTTTCCTTTAAGAAAAATTCGAAAATTTTACAATTAGATTGAAAAAATTCGAATTTCAAGAAAAATTTTTTTTGCAGTTTCAGTTTACCCATAATTCTATTTAAATTCAGAATGTTTTTCATTATTCGACGGTATTGGAACATTAAAAAAAATGGTTATGATTAAAACTTCAGATTCCAAAAAAAAAATATTCCAAAAAATTCAAAAAAAATTCAAAATTATCGAAGAAACAAAAAAATTTCGTTTCAGTTTGTCTATAATTCTGAGAACAGTGTGTTTACGTCGATTAAAAACCTTTTCCGCTTCACACAATTCGAGAAAACATCTGTTCATCGATCCTATGAAAATTTTGATTTTTCTAGAGATTTCTATGTTCTAAACACTTAAAGGGGGATCACCATTAAAGTTATCAAAAAGTTACTTAACGAGTTTTTTTTTCCAAGATAGAGCAATAAAACCAAATCTTTCATATTTT</canonical>
            <polymorphic>AATTTTTTTTTGAATTTTTTCTTTATTTTTATGTCAATCTACATGCATTTCTGCACATTTTGACGCAATAAAAAATTTCACCGTACACCACCTTTAAATAATAATAATCGAATTTTAACTTTTGAAATTTCTGAATATCCTTTAAGAGATAGCTCATTTGACCCTATCTCGTTTCCTGGTTGAACTATAAAAAAAAAGTTCAACTAATGAAATGTTTCTGATATCAAACCAAACATCTTTGTCCCTTTTCAAATCAATTAAACTCCGCCCACTTTTTTTAAAAACCTTATTTTGAGATCCAAACTTTTTTTTCTGAAAATTCGGGAATAATTGAGAAATAGGAATTTTTGGGATCCAAAAAAGCATTTTTCTTTCGGGAAATTTTCGAAGTTTGTGATTTTTGGGACGGATTTTTGGGATTTTTCACGAAATTAACTATACAAGCTGTCGATTTTTTTTCAGTTTTCAGTTTCAAATGATCCTTAATTTGGAACCAAGAWCATGTTCTTCAATCTCATTCAGAAAGTTTCCTTTAAGAAAAATTCGAAAATTTTACAATTAGATTGAAAAAATTCGAATTTCAAGAAAAATTTTTTTTGCAGTTTCAGTTTACCCATAATTCTATTTAAATTCAGAATGTTTTTCATTATTCGACGGTATTGGAACATTAAAAAAAATGGTTATGATTAAAACTTCAGATTCCAAAAAAAAAATATTCCAAAAAATTCAAAAAAAATTCAAAATTATCGAAGAAACAAAAAAATTTCGTTTCAGTTTGTCTATAATTCTGAGAACAGTGTGTTTACGTCGATTAAAAACCTTTTCCGCTTCACACAATTCGAGAAAACATCTGTTCATCGATCCTATGAAAATTTTGATTTTTCTAGAGATTTCTATGTTCTAAACACTTAAAGGGGGATCACCATTAAAGTTATCAAAAAGTTACTTAACGAGTTTTTTTTTCCAAGATAGAGCAATAAAACCAAATCTTTCATATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>430 289 197 68 16</canonical_bands>
                <polymorphic_bands>430 357 197 16</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>496 459 45</canonical_bands>
                <polymorphic_bands>955 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTTCGAAGTTTGTGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAATTATGGGTAAACTGAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AATTTTCGAAGTTTGTGATTTTTGGGACGGATTTTTGGGATTTTTCACGAAATTAACTATACAAGCTGTCGATTTTTTTTCAGTTTTCAGTTTCAAATGATCCTTAATTTGGAACCAAGAACATGTTCTTCAATCTCATTCAGAAAGTTTCCTTTAAGAAAAATTCGAAAATTTTACAATTAGATTGAAAAAATTCGAATTTCAAGAAAAATTTTTTTTGCAGTTTCAGTTTACCCATAATTC</canonical_amplicon>
		<polymorphic_amplicon>AATTTTCGAAGTTTGTGATTTTTGGGACGGATTTTTGGGATTTTTCACGAAATTAACTATACAAGCTGTCGATTTTTTTTCAGTTTTCAGTTTCAAATGATCCTTAATTTGGAACCAAGAWCATGTTCTTCAATCTCATTCAGAAAGTTTCCTTTAAGAAAAATTCGAAAATTTTACAATTAGATTGAAAAAATTCGAATTTCAAGAAAAATTTTTTTTGCAGTTTCAGTTTACCCATAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29669</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>169109</contig_pos>
        <strand>+</strand>
        <context>AGAAAGTTTC[C/T]TTTAAGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTTAATTTGGAACCAAGAACATGTTCTTCAATCTCATTCAGAAAGTTTC</left_flank>
        <right_flank>TTTAAGAAAAATTCGAAAATTTTACAATTAGATTGAAAAAATTCGAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCAATCTACATGCATTTCTGCACATTTTGACGCAATAAAAAATTTCACCGTACACCACCTTTAAATAATAATAATCGAATTTTAACTTTTGAAATTTCTGAATATCCTTTAAGAGATAGCTCATTTGACCCTATCTCGTTTCCTGGTTGAACTATAAAAAAAAAGTTCAACTAATGAAATGTTTCTGATATCAAACCAAACATCTTTGTCCCTTTTCAAATCAATTAAACTCCGCCCACTTTTTTTAAAAACCTTATTTTGAGATCCAAACTTTTTTTTCTGAAAATTCGGGAATAATTGAGAAATAGGAATTTTTGGGATCCAAAAAAGCATTTTTCTTTCGGGAAATTTTCGAAGTTTGTGATTTTTGGGACGGATTTTTGGGATTTTTCACGAAATTAACTATACAAGCTGTCGATTTTTTTTCAGTTTTCAGTTTCAAATGATCCTTAATTTGGAACCAAGAACATGTTCTTCAATCTCATTCAGAAAGTTTCCTTTAAGAAAAATTCGAAAATTTTACAATTAGATTGAAAAAATTCGAATTTCAAGAAAAATTTTTTTTGCAGTTTCAGTTTACCCATAATTCTATTTAAATTCAGAATGTTTTTCATTATTCGACGGTATTGGAACATTAAAAAAAATGGTTATGATTAAAACTTCAGATTCCAAAAAAAAAATATTCCAAAAAATTCAAAAAAAATTCAAAATTATCGAAGAAACAAAAAAATTTCGTTTCAGTTTGTCTATAATTCTGAGAACAGTGTGTTTACGTCGATTAAAAACCTTTTCCGCTTCACACAATTCGAGAAAACATCTGTTCATCGATCCTATGAAAATTTTGATTTTTCTAGAGATTTCTATGTTCTAAACACTTAAAGGGGGATCACCATTAAAGTTATCAAAAAGTTACTTAACGAGTTTTTTTTTCCAAGATAGAGCAATAAAACCAAATCTTTCATATTTTCCAGCTTCAAAAATATCTCTTGAGGACTCTC</canonical>
            <polymorphic>TGTCAATCTACATGCATTTCTGCACATTTTGACGCAATAAAAAATTTCACCGTACACCACCTTTAAATAATAATAATCGAATTTTAACTTTTGAAATTTCTGAATATCCTTTAAGAGATAGCTCATTTGACCCTATCTCGTTTCCTGGTTGAACTATAAAAAAAAAGTTCAACTAATGAAATGTTTCTGATATCAAACCAAACATCTTTGTCCCTTTTCAAATCAATTAAACTCCGCCCACTTTTTTTAAAAACCTTATTTTGAGATCCAAACTTTTTTTTCTGAAAATTCGGGAATAATTGAGAAATAGGAATTTTTGGGATCCAAAAAAGCATTTTTCTTTCGGGAAATTTTCGAAGTTTGTGATTTTTGGGACGGATTTTTGGGATTTTTCACGAAATTAACTATACAAGCTGTCGATTTTTTTTCAGTTTTCAGTTTCAAATGATCCTTAATTTGGAACCAAGAACATGTTCTTCAATCTCATTCAGAAAGTTTCYTTTAAGAAAAATTCGAAAATTTTACAATTAGATTGAAAAAATTCGAATTTCAAGAAAAATTTTTTTTGCAGTTTCAGTTTACCCATAATTCTATTTAAATTCAGAATGTTTTTCATTATTCGACGGTATTGGAACATTAAAAAAAATGGTTATGATTAAAACTTCAGATTCCAAAAAAAAAATATTCCAAAAAATTCAAAAAAAATTCAAAATTATCGAAGAAACAAAAAAATTTCGTTTCAGTTTGTCTATAATTCTGAGAACAGTGTGTTTACGTCGATTAAAAACCTTTTCCGCTTCACACAATTCGAGAAAACATCTGTTCATCGATCCTATGAAAATTTTGATTTTTCTAGAGATTTCTATGTTCTAAACACTTAAAGGGGGATCACCATTAAAGTTATCAAAAAGTTACTTAACGAGTTTTTTTTTCCAAGATAGAGCAATAAAACCAAATCTTTCATATTTTCCAGCTTCAAAAATATCTCTTGAGGACTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTTTCAGTTTCAAATGATCC</pcr_primer_p1>
		<pcr_primer_p2>TTTGGAATCTGAAGTTTTAATCA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGTTTTCAGTTTCAAATGATCCTTAATTTGGAACCAAGAACATGTTCTTCAATCTCATTCAGAAAGTTTCCTTTAAGAAAAATTCGAAAATTTTACAATTAGATTGAAAAAATTCGAATTTCAAGAAAAATTTTTTTTGCAGTTTCAGTTTACCCATAATTCTATTTAAATTCAGAATGTTTTTCATTATTCGACGGTATTGGAACATTAAAAAAAATGGTTATGATTAAAACTTCAGATTCCAAA</canonical_amplicon>
		<polymorphic_amplicon>AGTTTTCAGTTTCAAATGATCCTTAATTTGGAACCAAGAACATGTTCTTCAATCTCATTCAGAAAGTTTCYTTTAAGAAAAATTCGAAAATTTTACAATTAGATTGAAAAAATTCGAATTTCAAGAAAAATTTTTTTTGCAGTTTCAGTTTACCCATAATTCTATTTAAATTCAGAATGTTTTTCATTATTCGACGGTATTGGAACATTAAAAAAAATGGTTATGATTAAAACTTCAGATTCCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29670</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>169169</contig_pos>
        <strand>+</strand>
        <context>TCAAGAAAAA[C/T]TTTTTTTGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTCGAAAATTTTACAATTAGATTGAAAAAATTCGAATTTCAAGAAAAA</left_flank>
        <right_flank>TTTTTTTGCAGTTTCAGTTTACCCATAATTCTATTTAAATTCAGAATGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTAAATAATAATAATCGAATTTTAACTTTTGAAATTTCTGAATATCCTTTAAGAGATAGCTCATTTGACCCTATCTCGTTTCCTGGTTGAACTATAAAAAAAAAGTTCAACTAATGAAATGTTTCTGATATCAAACCAAACATCTTTGTCCCTTTTCAAATCAATTAAACTCCGCCCACTTTTTTTAAAAACCTTATTTTGAGATCCAAACTTTTTTTTCTGAAAATTCGGGAATAATTGAGAAATAGGAATTTTTGGGATCCAAAAAAGCATTTTTCTTTCGGGAAATTTTCGAAGTTTGTGATTTTTGGGACGGATTTTTGGGATTTTTCACGAAATTAACTATACAAGCTGTCGATTTTTTTTCAGTTTTCAGTTTCAAATGATCCTTAATTTGGAACCAAGAACATGTTCTTCAATCTCATTCAGAAAGTTTCCTTTAAGAAAAATTCGAAAATTTTACAATTAGATTGAAAAAATTCGAATTTCAAGAAAAATTTTTTTTGCAGTTTCAGTTTACCCATAATTCTATTTAAATTCAGAATGTTTTTCATTATTCGACGGTATTGGAACATTAAAAAAAATGGTTATGATTAAAACTTCAGATTCCAAAAAAAAAATATTCCAAAAAATTCAAAAAAAATTCAAAATTATCGAAGAAACAAAAAAATTTCGTTTCAGTTTGTCTATAATTCTGAGAACAGTGTGTTTACGTCGATTAAAAACCTTTTCCGCTTCACACAATTCGAGAAAACATCTGTTCATCGATCCTATGAAAATTTTGATTTTTCTAGAGATTTCTATGTTCTAAACACTTAAAGGGGGATCACCATTAAAGTTATCAAAAAGTTACTTAACGAGTTTTTTTTTCCAAGATAGAGCAATAAAACCAAATCTTTCATATTTTCCAGCTTCAAAAATATCTCTTGAGGACTCTCTTGAGGACTGTTAAAAAGGACTGCTACAGATGAAAACTCAAAAAATTGGTCGAAAACATG</canonical>
            <polymorphic>CTTTAAATAATAATAATCGAATTTTAACTTTTGAAATTTCTGAATATCCTTTAAGAGATAGCTCATTTGACCCTATCTCGTTTCCTGGTTGAACTATAAAAAAAAAGTTCAACTAATGAAATGTTTCTGATATCAAACCAAACATCTTTGTCCCTTTTCAAATCAATTAAACTCCGCCCACTTTTTTTAAAAACCTTATTTTGAGATCCAAACTTTTTTTTCTGAAAATTCGGGAATAATTGAGAAATAGGAATTTTTGGGATCCAAAAAAGCATTTTTCTTTCGGGAAATTTTCGAAGTTTGTGATTTTTGGGACGGATTTTTGGGATTTTTCACGAAATTAACTATACAAGCTGTCGATTTTTTTTCAGTTTTCAGTTTCAAATGATCCTTAATTTGGAACCAAGAACATGTTCTTCAATCTCATTCAGAAAGTTTCCTTTAAGAAAAATTCGAAAATTTTACAATTAGATTGAAAAAATTCGAATTTCAAGAAAAAYTTTTTTTGCAGTTTCAGTTTACCCATAATTCTATTTAAATTCAGAATGTTTTTCATTATTCGACGGTATTGGAACATTAAAAAAAATGGTTATGATTAAAACTTCAGATTCCAAAAAAAAAATATTCCAAAAAATTCAAAAAAAATTCAAAATTATCGAAGAAACAAAAAAATTTCGTTTCAGTTTGTCTATAATTCTGAGAACAGTGTGTTTACGTCGATTAAAAACCTTTTCCGCTTCACACAATTCGAGAAAACATCTGTTCATCGATCCTATGAAAATTTTGATTTTTCTAGAGATTTCTATGTTCTAAACACTTAAAGGGGGATCACCATTAAAGTTATCAAAAAGTTACTTAACGAGTTTTTTTTTCCAAGATAGAGCAATAAAACCAAATCTTTCATATTTTCCAGCTTCAAAAATATCTCTTGAGGACTCTCTTGAGGACTGTTAAAAAGGACTGCTACAGATGAAAACTCAAAAAATTGGTCGAAAACATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>221 192 161 109 95 40 37 27 25 22 19 15 12 11 8 6</canonical_bands>
                <polymorphic_bands>221 192 161 109 95 52 37 27 25 22 19 15 11 8 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>204 130 95 62 56 55 52 50 37 35 29 22 20 19 17 15 14 14 12 11 11 11 8 8 7 6</canonical_bands>
                <polymorphic_bands>204 130 95 62 56 55 52 50 41 37 35 22 20 19 17 15 14 14 11 11 11 8 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTTTCAGTTTCAAATGATCC</pcr_primer_p1>
		<pcr_primer_p2>TTTGGAATCTGAAGTTTTAATCA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGTTTTCAGTTTCAAATGATCCTTAATTTGGAACCAAGAACATGTTCTTCAATCTCATTCAGAAAGTTTCCTTTAAGAAAAATTCGAAAATTTTACAATTAGATTGAAAAAATTCGAATTTCAAGAAAAATTTTTTTTGCAGTTTCAGTTTACCCATAATTCTATTTAAATTCAGAATGTTTTTCATTATTCGACGGTATTGGAACATTAAAAAAAATGGTTATGATTAAAACTTCAGATTCCAAA</canonical_amplicon>
		<polymorphic_amplicon>AGTTTTCAGTTTCAAATGATCCTTAATTTGGAACCAAGAACATGTTCTTCAATCTCATTCAGAAAGTTTCCTTTAAGAAAAATTCGAAAATTTTACAATTAGATTGAAAAAATTCGAATTTCAAGAAAAAYTTTTTTTGCAGTTTCAGTTTACCCATAATTCTATTTAAATTCAGAATGTTTTTCATTATTCGACGGTATTGGAACATTAAAAAAAATGGTTATGATTAAAACTTCAGATTCCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29671</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>207312</contig_pos>
        <strand></strand>
        <context>acacaattta[G/A]tagttgatca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAAAAACGCTGAACTACAAAATTGCTCAGCATACAATTTCACACAATTTA</left_flank>
        <right_flank>TAGTTGATCACTTTTTGATAGCTAACGTAGTTTTTGAGATACAAGCTCTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATCAGAATATCAACATTATATCAAATTTCCTTATCAGAAGCAAAGAAAGCGATATATCTTAAAAAGCACGGAAGATATCAAAAAATGATCAACTGCGAAAATGTAGGAAATGATATTTTACACAACTTTATTGTGGACAATTTTTTGATAACTAACGTAGTTGTTGAGATACGAGCGCTGAAAGTTATGTTAAGAAAGAGACGCTTTGGCGTTTTTTAGTCAAACGTCTGTATCTCAAAAGCCGTATAGCTAACTAAAAACAATCAATTGCAAAAATGTTGAGCTTAAAATTTTACACAACTTTGCAATTTACATTTTTTGATTACTAACGTAGTTTTTGAGATATGGATTTTTGAAGTTTAAGCTTGAAGAAGAGCTTCTCGGAGTCGCCTAGTGTGAGGGGAACGCTCGTAAAACACTTATATCTCAAAAAGCGTAACAGCTATCTAAAAACGCTGAACTACAAAATTGCTCAGCATACAATTTCACACAATTTAGTAGTTGATCACTTTTTGATAGCTAACGTAGTTTTTGAGATACAAGCTCTTAAAGTTTCAGCGTGCAAACGCGTTTCTCGGAGTCTCCTAAGGCAGGGAAAAAGCTTGATATCAGCTTCAAACGTTTGTATTTCTAAAACCTATTAGCCAGCTGAAAACGTTCAACTACAAAGATGTTCAACATAAAATTTTTAACAATTTCGGAGTTGACCACTTTTTGATATCTATTTTGGTTCTTGATATATAACCGTTTAAAGTGTATAGACGGCTGACACCGTCTGAAGGATGCTGATCTTCTGATTCTTTTTCACGTCACCTGAAAACACAAAAGGACAAGTATTTTTTGGCAAAAAAAACAAGTTTTTGTTCTCTCTCTGCAAAAGGGAAAAATTAAATATTTACAAGTAGCAAAAAAAAAGAGAATAGGCGCCAAACTATTTTTCCCTCTATTTTTTCTCTATTTTCCAAAATGTTCCATCTCTAGTACACCATTTTTATGAC</canonical>
            <polymorphic>AGATCAGAATATCAACATTATATCAAATTTCCTTATCAGAAGCAAAGAAAGCGATATATCTTAAAAAGCACGGAAGATATCAAAAAATGATCAACTGCGAAAATGTAGGAAATGATATTTTACACAACTTTATTGTGGACAATTTTTTGATAACTAACGTAGTTGTTGAGATACGAGCGCTGAAAGTTATGTTAAGAAAGAGACGCTTTGGCGTTTTTTAGTCAAACGTCTGTATCTCAAAAGCCGTATAGCTAACTAAAAACAATCAATTGCAAAAATGTTGAGCTTAAAATTTTACACAACTTTGCAATTTACATTTTTTGATTACTAACGTAGTTTTTGAGATATGGATTTTTGAAGTTTAAGCTTGAAGAAGAGCTTCTCGGAGTCGCCTAGTGTGAGGGGAACGCTCGTAAAACACTTATATCTCAAAAAGCGTAACAGCTATCTAAAAACGCTGAACTACAAAATTGCTCAGCATACAATTTCACACAATTTARTAGTTGATCACTTTTTGATAGCTAACGTAGTTTTTGAGATACAAGCTCTTAAAGTTTCAGCGTGCAAACGCGTTTCTCGGAGTCTCCTAAGGCAGGGAAAAAGCTTGATATCAGCTTCAAACGTTTGTATTTCTAAAACCTATTAGCCAGCTGAAAACGTTCAACTACAAAGATGTTCAACATAAAATTTTTAACAATTTCGGAGTTGACCACTTTTTGATATCTATTTTGGTTCTTGATATATAACCGTTTAAAGTGTATAGACGGCTGACACCGTCTGAAGGATGCTGATCTTCTGATTCTTTTTCACGTCACCTGAAAACACAAAAGGACAAGTATTTTTTGGCAAAAAAAACAAGTTTTTGTTCTCTCTCTGCAAAAGGGAAAAATTAAATATTTACAAGTAGCAAAAAAAAAGAGAATAGGCGCCAAACTATTTTTCCCTCTATTTTTTCTCTATTTTCCAAAATGTTCCATCTCTAGTACACCATTTTTATGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATTATATCAAATTTCCTTATCAGA</pcr_primer_p1>
		<pcr_primer_p2>GAAGATCAGCATCCTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>782</pcr_amplicon_size>
		<canonical_amplicon>ACATTATATCAAATTTCCTTATCAGAAGCAAAGAAAGCGATATATCTTAAAAAGCACGGAAGATATCAAAAAATGATCAACTGCGAAAATGTAGGAAATGATATTTTACACAACTTTATTGTGGACAATTTTTTGATAACTAACGTAGTTGTTGAGATACGAGCGCTGAAAGTTATGTTAAGAAAGAGACGCTTTGGCGTTTTTTAGTCAAACGTCTGTATCTCAAAAGCCGTATAGCTAACTAAAAACAATCAATTGCAAAAATGTTGAGCTTAAAATTTTACACAACTTTGCAATTTACATTTTTTGATTACTAACGTAGTTTTTGAGATATGGATTTTTGAAGTTTAAGCTTGAAGAAGAGCTTCTCGGAGTCGCCTAGTGTGAGGGGAACGCTCGTAAAACACTTATATCTCAAAAAGCGTAACAGCTATCTAAAAACGCTGAACTACAAAATTGCTCAGCATACAATTTCACACAATTTAGTAGTTGATCACTTTTTGATAGCTAACGTAGTTTTTGAGATACAAGCTCTTAAAGTTTCAGCGTGCAAACGCGTTTCTCGGAGTCTCCTAAGGCAGGGAAAAAGCTTGATATCAGCTTCAAACGTTTGTATTTCTAAAACCTATTAGCCAGCTGAAAACGTTCAACTACAAAGATGTTCAACATAAAATTTTTAACAATTTCGGAGTTGACCACTTTTTGATATCTATTTTGGTTCTTGATATATAACCGTTTAAAGTGTATAGACGGCTGACACCGTCTGAAGGATGCTGATCTTC</canonical_amplicon>
		<polymorphic_amplicon>ACATTATATCAAATTTCCTTATCAGAAGCAAAGAAAGCGATATATCTTAAAAAGCACGGAAGATATCAAAAAATGATCAACTGCGAAAATGTAGGAAATGATATTTTACACAACTTTATTGTGGACAATTTTTTGATAACTAACGTAGTTGTTGAGATACGAGCGCTGAAAGTTATGTTAAGAAAGAGACGCTTTGGCGTTTTTTAGTCAAACGTCTGTATCTCAAAAGCCGTATAGCTAACTAAAAACAATCAATTGCAAAAATGTTGAGCTTAAAATTTTACACAACTTTGCAATTTACATTTTTTGATTACTAACGTAGTTTTTGAGATATGGATTTTTGAAGTTTAAGCTTGAAGAAGAGCTTCTCGGAGTCGCCTAGTGTGAGGGGAACGCTCGTAAAACACTTATATCTCAAAAAGCGTAACAGCTATCTAAAAACGCTGAACTACAAAATTGCTCAGCATACAATTTCACACAATTTARTAGTTGATCACTTTTTGATAGCTAACGTAGTTTTTGAGATACAAGCTCTTAAAGTTTCAGCGTGCAAACGCGTTTCTCGGAGTCTCCTAAGGCAGGGAAAAAGCTTGATATCAGCTTCAAACGTTTGTATTTCTAAAACCTATTAGCCAGCTGAAAACGTTCAACTACAAAGATGTTCAACATAAAATTTTTAACAATTTCGGAGTTGACCACTTTTTGATATCTATTTTGGTTCTTGATATATAACCGTTTAAAGTGTATAGACGGCTGACACCGTCTGAAGGATGCTGATCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29672</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>226080</contig_pos>
        <strand></strand>
        <context>AAAAATTAAA[T/A]AAATATAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATTATCTGAGGCCGAAACTCTGACAAAATCCAAATTTTCTAAAAATTAAA</left_flank>
        <right_flank>AAATATAGTTACAGTTCCAAGTAGGAATTTTCAAAGGTTTAGAAAATTGC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCCATTAATCACATTTTTCTTGAATTGAAAATTTACATCTCATTTTTTAGAAATAGAAAAAAATTCAGAAAAACTGGAACTCGGAATTGAGAAACTAAGATTTTGAAATCACATGAACGTTTGAAATTCCTGTGATTTGAATGCTTATATTAGGCACAATCGGGAAAACAATCATAACTAATTAATTATCAATATCTGAATTTCATGATTACCAGTTGAAACCGGAAAATTGGGAGTTTTCAAATTTGAAAAAAATCTGTTTTCCGACTGCACAGTGAGATATACATATATATTAATAGAAGCTGCACGGAATTCAAAAGTGCTTTTATCGCTAAAATTCAAAAAAGAATTGAAAATTGAAATTTCAAGAGAGAAGAAACTTTGAAAAAAACGTTATATTTTGGTTAAAGTGGGCATCGGACCCGAAATTTGAAACCCTCTCAAAATAATTATCTGAGGCCGAAACTCTGACAAAATCCAAATTTTCTAAAAATTAAATAAATATAGTTACAGTTCCAAGTAGGAATTTTCAAAGGTTTAGAAAATTGCATCTGATTCAGAAAACCTTTTTAATATAGGTCTCGCGGAAAAATTGAAAAACAAACATTATAAATATTAAAAATCGGATACAGACACCAAATTGCTTGAACAGTTTTAATTTTAAAAAATAGCATTTTGAAACAGAAAAAATCGGAAAAACTCAATTTTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGTAAATAAATATAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCCCGATTGTTAAAACTTGTATAAATTTCCACTAAAAATTACAATTTGAAACAGAAAAAATTGGAATAGATTGAAAAATTACAAATTTCAAAAAAATATTCTCTACAAGTCTAGAAATATAAAATTAAGACGATAGGAACAGAAAATTCGTAAAGATTTCCAAATGTTTCCATT</canonical>
            <polymorphic>GGCCATTAATCACATTTTTCTTGAATTGAAAATTTACATCTCATTTTTTAGAAATAGAAAAAAATTCAGAAAAACTGGAACTCGGAATTGAGAAACTAAGATTTTGAAATCACATGAACGTTTGAAATTCCTGTGATTTGAATGCTTATATTAGGCACAATCGGGAAAACAATCATAACTAATTAATTATCAATATCTGAATTTCATGATTACCAGTTGAAACCGGAAAATTGGGAGTTTTCAAATTTGAAAAAAATCTGTTTTCCGACTGCACAGTGAGATATACATATATATTAATAGAAGCTGCACGGAATTCAAAAGTGCTTTTATCGCTAAAATTCAAAAAAGAATTGAAAATTGAAATTTCAAGAGAGAAGAAACTTTGAAAAAAACGTTATATTTTGGTTAAAGTGGGCATCGGACCCGAAATTTGAAACCCTCTCAAAATAATTATCTGAGGCCGAAACTCTGACAAAATCCAAATTTTCTAAAAATTAAAWAAATATAGTTACAGTTCCAAGTAGGAATTTTCAAAGGTTTAGAAAATTGCATCTGATTCAGAAAACCTTTTTAATATAGGTCTCGCGGAAAAATTGAAAAACAAACATTATAAATATTAAAAATCGGATACAGACACCAAATTGCTTGAACAGTTTTAATTTTAAAAAATAGCATTTTGAAACAGAAAAAATCGGAAAAACTCAATTTTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGTAAATAAATATAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCCCGATTGTTAAAACTTGTATAAATTTCCACTAAAAATTACAATTTGAAACAGAAAAAATTGGAATAGATTGAAAAATTACAAATTTCAAAAAAATATTCTCTACAAGTCTAGAAATATAAAATTAAGACGATAGGAACAGAAAATTCGTAAAGATTTCCAAATGTTTCCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAATTCAAAAGTGCTTTTATC</pcr_primer_p1>
		<pcr_primer_p2>GAATCAGATGCAATTTTCTAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAATTCAAAAGTGCTTTTATCGCTAAAATTCAAAAAAGAATTGAAAATTGAAATTTCAAGAGAGAAGAAACTTTGAAAAAAACGTTATATTTTGGTTAAAGTGGGCATCGGACCCGAAATTTGAAACCCTCTCAAAATAATTATCTGAGGCCGAAACTCTGACAAAATCCAAATTTTCTAAAAATTAAATAAATATAGTTACAGTTCCAAGTAGGAATTTTCAAAGGTTTAGAAAATTGCATCTGATTC</canonical_amplicon>
		<polymorphic_amplicon>GGAATTCAAAAGTGCTTTTATCGCTAAAATTCAAAAAAGAATTGAAAATTGAAATTTCAAGAGAGAAGAAACTTTGAAAAAAACGTTATATTTTGGTTAAAGTGGGCATCGGACCCGAAATTTGAAACCCTCTCAAAATAATTATCTGAGGCCGAAACTCTGACAAAATCCAAATTTTCTAAAAATTAAAWAAATATAGTTACAGTTCCAAGTAGGAATTTTCAAAGGTTTAGAAAATTGCATCTGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29673</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>226184</contig_pos>
        <strand></strand>
        <context>TTGAAAAACA[A/G]ACATTATAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATTCAGAAAACCTTTTTAATATAGGTCTCGCGGAAAAATTGAAAAACA</left_flank>
        <right_flank>ACATTATAAATATTAAAAATCGGATACAGACACCAAATTGCTTGAACAGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAATCACATGAACGTTTGAAATTCCTGTGATTTGAATGCTTATATTAGGCACAATCGGGAAAACAATCATAACTAATTAATTATCAATATCTGAATTTCATGATTACCAGTTGAAACCGGAAAATTGGGAGTTTTCAAATTTGAAAAAAATCTGTTTTCCGACTGCACAGTGAGATATACATATATATTAATAGAAGCTGCACGGAATTCAAAAGTGCTTTTATCGCTAAAATTCAAAAAAGAATTGAAAATTGAAATTTCAAGAGAGAAGAAACTTTGAAAAAAACGTTATATTTTGGTTAAAGTGGGCATCGGACCCGAAATTTGAAACCCTCTCAAAATAATTATCTGAGGCCGAAACTCTGACAAAATCCAAATTTTCTAAAAATTAAATAAATATAGTTACAGTTCCAAGTAGGAATTTTCAAAGGTTTAGAAAATTGCATCTGATTCAGAAAACCTTTTTAATATAGGTCTCGCGGAAAAATTGAAAAACAAACATTATAAATATTAAAAATCGGATACAGACACCAAATTGCTTGAACAGTTTTAATTTTAAAAAATAGCATTTTGAAACAGAAAAAATCGGAAAAACTCAATTTTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGTAAATAAATATAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCCCGATTGTTAAAACTTGTATAAATTTCCACTAAAAATTACAATTTGAAACAGAAAAAATTGGAATAGATTGAAAAATTACAAATTTCAAAAAAATATTCTCTACAAGTCTAGAAATATAAAATTAAGACGATAGGAACAGAAAATTCGTAAAGATTTCCAAATGTTTCCATTCTAGATCCTAATCTCTTTTTCTCAAAAATGGAGTGAATTAGAGATTTCGTGTGACCGATTTCAAGAGAAAAAGGGACCACTCTGTAAAAAAACCTGGAAAATTA</canonical>
            <polymorphic>TGAAATCACATGAACGTTTGAAATTCCTGTGATTTGAATGCTTATATTAGGCACAATCGGGAAAACAATCATAACTAATTAATTATCAATATCTGAATTTCATGATTACCAGTTGAAACCGGAAAATTGGGAGTTTTCAAATTTGAAAAAAATCTGTTTTCCGACTGCACAGTGAGATATACATATATATTAATAGAAGCTGCACGGAATTCAAAAGTGCTTTTATCGCTAAAATTCAAAAAAGAATTGAAAATTGAAATTTCAAGAGAGAAGAAACTTTGAAAAAAACGTTATATTTTGGTTAAAGTGGGCATCGGACCCGAAATTTGAAACCCTCTCAAAATAATTATCTGAGGCCGAAACTCTGACAAAATCCAAATTTTCTAAAAATTAAATAAATATAGTTACAGTTCCAAGTAGGAATTTTCAAAGGTTTAGAAAATTGCATCTGATTCAGAAAACCTTTTTAATATAGGTCTCGCGGAAAAATTGAAAAACARACATTATAAATATTAAAAATCGGATACAGACACCAAATTGCTTGAACAGTTTTAATTTTAAAAAATAGCATTTTGAAACAGAAAAAATCGGAAAAACTCAATTTTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGTAAATAAATATAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCCCGATTGTTAAAACTTGTATAAATTTCCACTAAAAATTACAATTTGAAACAGAAAAAATTGGAATAGATTGAAAAATTACAAATTTCAAAAAAATATTCTCTACAAGTCTAGAAATATAAAATTAAGACGATAGGAACAGAAAATTCGTAAAGATTTCCAAATGTTTCCATTCTAGATCCTAATCTCTTTTTCTCAAAAATGGAGTGAATTAGAGATTTCGTGTGACCGATTTCAAGAGAAAAAGGGACCACTCTGTAAAAAAACCTGGAAAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGTTTAGAAAATTGCATCTG</pcr_primer_p1>
		<pcr_primer_p2>ACGTATCGAAATAACACTCTACAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGGTTTAGAAAATTGCATCTGATTCAGAAAACCTTTTTAATATAGGTCTCGCGGAAAAATTGAAAAACAAACATTATAAATATTAAAAATCGGATACAGACACCAAATTGCTTGAACAGTTTTAATTTTAAAAAATAGCATTTTGAAACAGAAAAAATCGGAAAAACTCAATTTTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGT</canonical_amplicon>
		<polymorphic_amplicon>AAGGTTTAGAAAATTGCATCTGATTCAGAAAACCTTTTTAATATAGGTCTCGCGGAAAAATTGAAAAACARACATTATAAATATTAAAAATCGGATACAGACACCAAATTGCTTGAACAGTTTTAATTTTAAAAAATAGCATTTTGAAACAGAAAAAATCGGAAAAACTCAATTTTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29674</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>226253</contig_pos>
        <strand></strand>
        <context>TAAAAAATAG[C/T]ATTTTGAAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCGGATACAGACACCAAATTGCTTGAACAGTTTTAATTTTAAAAAATAG</left_flank>
        <right_flank>ATTTTGAAACAGAAAAAATCGGAAAAACTCAATTTTGAAAATTGTGAGAT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATAACTAATTAATTATCAATATCTGAATTTCATGATTACCAGTTGAAACCGGAAAATTGGGAGTTTTCAAATTTGAAAAAAATCTGTTTTCCGACTGCACAGTGAGATATACATATATATTAATAGAAGCTGCACGGAATTCAAAAGTGCTTTTATCGCTAAAATTCAAAAAAGAATTGAAAATTGAAATTTCAAGAGAGAAGAAACTTTGAAAAAAACGTTATATTTTGGTTAAAGTGGGCATCGGACCCGAAATTTGAAACCCTCTCAAAATAATTATCTGAGGCCGAAACTCTGACAAAATCCAAATTTTCTAAAAATTAAATAAATATAGTTACAGTTCCAAGTAGGAATTTTCAAAGGTTTAGAAAATTGCATCTGATTCAGAAAACCTTTTTAATATAGGTCTCGCGGAAAAATTGAAAAACAAACATTATAAATATTAAAAATCGGATACAGACACCAAATTGCTTGAACAGTTTTAATTTTAAAAAATAGCATTTTGAAACAGAAAAAATCGGAAAAACTCAATTTTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGTAAATAAATATAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCCCGATTGTTAAAACTTGTATAAATTTCCACTAAAAATTACAATTTGAAACAGAAAAAATTGGAATAGATTGAAAAATTACAAATTTCAAAAAAATATTCTCTACAAGTCTAGAAATATAAAATTAAGACGATAGGAACAGAAAATTCGTAAAGATTTCCAAATGTTTCCATTCTAGATCCTAATCTCTTTTTCTCAAAAATGGAGTGAATTAGAGATTTCGTGTGACCGATTTCAAGAGAAAAAGGGACCACTCTGTAAAAAAACCTGGAAAATTAGACGAGGTACATTTTGATCGAAATCTCCTACGTTGCTATCTGGGAGATGCATCGAAAATAATTTTATAG</canonical>
            <polymorphic>CATAACTAATTAATTATCAATATCTGAATTTCATGATTACCAGTTGAAACCGGAAAATTGGGAGTTTTCAAATTTGAAAAAAATCTGTTTTCCGACTGCACAGTGAGATATACATATATATTAATAGAAGCTGCACGGAATTCAAAAGTGCTTTTATCGCTAAAATTCAAAAAAGAATTGAAAATTGAAATTTCAAGAGAGAAGAAACTTTGAAAAAAACGTTATATTTTGGTTAAAGTGGGCATCGGACCCGAAATTTGAAACCCTCTCAAAATAATTATCTGAGGCCGAAACTCTGACAAAATCCAAATTTTCTAAAAATTAAATAAATATAGTTACAGTTCCAAGTAGGAATTTTCAAAGGTTTAGAAAATTGCATCTGATTCAGAAAACCTTTTTAATATAGGTCTCGCGGAAAAATTGAAAAACAAACATTATAAATATTAAAAATCGGATACAGACACCAAATTGCTTGAACAGTTTTAATTTTAAAAAATAGYATTTTGAAACAGAAAAAATCGGAAAAACTCAATTTTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGTAAATAAATATAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCCCGATTGTTAAAACTTGTATAAATTTCCACTAAAAATTACAATTTGAAACAGAAAAAATTGGAATAGATTGAAAAATTACAAATTTCAAAAAAATATTCTCTACAAGTCTAGAAATATAAAATTAAGACGATAGGAACAGAAAATTCGTAAAGATTTCCAAATGTTTCCATTCTAGATCCTAATCTCTTTTTCTCAAAAATGGAGTGAATTAGAGATTTCGTGTGACCGATTTCAAGAGAAAAAGGGACCACTCTGTAAAAAAACCTGGAAAATTAGACGAGGTACATTTTGATCGAAATCTCCTACGTTGCTATCTGGGAGATGCATCGAAAATAATTTTATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGTTTAGAAAATTGCATCTG</pcr_primer_p1>
		<pcr_primer_p2>ACGTATCGAAATAACACTCTACAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGGTTTAGAAAATTGCATCTGATTCAGAAAACCTTTTTAATATAGGTCTCGCGGAAAAATTGAAAAACAAACATTATAAATATTAAAAATCGGATACAGACACCAAATTGCTTGAACAGTTTTAATTTTAAAAAATAGCATTTTGAAACAGAAAAAATCGGAAAAACTCAATTTTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGT</canonical_amplicon>
		<polymorphic_amplicon>AAGGTTTAGAAAATTGCATCTGATTCAGAAAACCTTTTTAATATAGGTCTCGCGGAAAAATTGAAAAACAAACATTATAAATATTAAAAATCGGATACAGACACCAAATTGCTTGAACAGTTTTAATTTTAAAAAATAGYATTTTGAAACAGAAAAAATCGGAAAAACTCAATTTTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29675</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>226337</contig_pos>
        <strand></strand>
        <context>AAAACTTGAG[A/G]TTGTAGAGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAG</left_flank>
        <right_flank>TTGTAGAGTGTTATTTCGATACGTAAATAAATATAAATTAATACTACTAT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTTTTCCGACTGCACAGTGAGATATACATATATATTAATAGAAGCTGCACGGAATTCAAAAGTGCTTTTATCGCTAAAATTCAAAAAAGAATTGAAAATTGAAATTTCAAGAGAGAAGAAACTTTGAAAAAAACGTTATATTTTGGTTAAAGTGGGCATCGGACCCGAAATTTGAAACCCTCTCAAAATAATTATCTGAGGCCGAAACTCTGACAAAATCCAAATTTTCTAAAAATTAAATAAATATAGTTACAGTTCCAAGTAGGAATTTTCAAAGGTTTAGAAAATTGCATCTGATTCAGAAAACCTTTTTAATATAGGTCTCGCGGAAAAATTGAAAAACAAACATTATAAATATTAAAAATCGGATACAGACACCAAATTGCTTGAACAGTTTTAATTTTAAAAAATAGCATTTTGAAACAGAAAAAATCGGAAAAACTCAATTTTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGTAAATAAATATAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCCCGATTGTTAAAACTTGTATAAATTTCCACTAAAAATTACAATTTGAAACAGAAAAAATTGGAATAGATTGAAAAATTACAAATTTCAAAAAAATATTCTCTACAAGTCTAGAAATATAAAATTAAGACGATAGGAACAGAAAATTCGTAAAGATTTCCAAATGTTTCCATTCTAGATCCTAATCTCTTTTTCTCAAAAATGGAGTGAATTAGAGATTTCGTGTGACCGATTTCAAGAGAAAAAGGGACCACTCTGTAAAAAAACCTGGAAAATTAGACGAGGTACATTTTGATCGAAATCTCCTACGTTGCTATCTGGGAGATGCATCGAAAATAATTTTATAGAAATTACATATAAAGGAGGAAGATTCCAAAAAGAGGATTTCGGAATGCAAATTGGGGTTAATGGGGATGAACTTTTTTTTTGAT</canonical>
            <polymorphic>CTGTTTTCCGACTGCACAGTGAGATATACATATATATTAATAGAAGCTGCACGGAATTCAAAAGTGCTTTTATCGCTAAAATTCAAAAAAGAATTGAAAATTGAAATTTCAAGAGAGAAGAAACTTTGAAAAAAACGTTATATTTTGGTTAAAGTGGGCATCGGACCCGAAATTTGAAACCCTCTCAAAATAATTATCTGAGGCCGAAACTCTGACAAAATCCAAATTTTCTAAAAATTAAATAAATATAGTTACAGTTCCAAGTAGGAATTTTCAAAGGTTTAGAAAATTGCATCTGATTCAGAAAACCTTTTTAATATAGGTCTCGCGGAAAAATTGAAAAACAAACATTATAAATATTAAAAATCGGATACAGACACCAAATTGCTTGAACAGTTTTAATTTTAAAAAATAGCATTTTGAAACAGAAAAAATCGGAAAAACTCAATTTTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAGRTTGTAGAGTGTTATTTCGATACGTAAATAAATATAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCCCGATTGTTAAAACTTGTATAAATTTCCACTAAAAATTACAATTTGAAACAGAAAAAATTGGAATAGATTGAAAAATTACAAATTTCAAAAAAATATTCTCTACAAGTCTAGAAATATAAAATTAAGACGATAGGAACAGAAAATTCGTAAAGATTTCCAAATGTTTCCATTCTAGATCCTAATCTCTTTTTCTCAAAAATGGAGTGAATTAGAGATTTCGTGTGACCGATTTCAAGAGAAAAAGGGACCACTCTGTAAAAAAACCTGGAAAATTAGACGAGGTACATTTTGATCGAAATCTCCTACGTTGCTATCTGGGAGATGCATCGAAAATAATTTTATAGAAATTACATATAAAGGAGGAAGATTCCAAAAAGAGGATTTCGGAATGCAAATTGGGGTTAATGGGGATGAACTTTTTTTTTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATATTAAAAATCGGATACAGACA</pcr_primer_p1>
		<pcr_primer_p2>GGCCTCTTTATCCACTAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>218</pcr_amplicon_size>
		<canonical_amplicon>AAATATTAAAAATCGGATACAGACACCAAATTGCTTGAACAGTTTTAATTTTAAAAAATAGCATTTTGAAACAGAAAAAATCGGAAAAACTCAATTTTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGTAAATAAATATAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCC</canonical_amplicon>
		<polymorphic_amplicon>AAATATTAAAAATCGGATACAGACACCAAATTGCTTGAACAGTTTTAATTTTAAAAAATAGCATTTTGAAACAGAAAAAATCGGAAAAACTCAATTTTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAGRTTGTAGAGTGTTATTTCGATACGTAAATAAATATAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29676</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>226371</contig_pos>
        <strand></strand>
        <context>TAAATAAATA[T/A]AAATTAATAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGTAAATAAATA</left_flank>
        <right_flank>AAATTAATACTACTATATTTCTAGTGGATAAAGAGGCCCGATTGTTAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTAATAGAAGCTGCACGGAATTCAAAAGTGCTTTTATCGCTAAAATTCAAAAAAGAATTGAAAATTGAAATTTCAAGAGAGAAGAAACTTTGAAAAAAACGTTATATTTTGGTTAAAGTGGGCATCGGACCCGAAATTTGAAACCCTCTCAAAATAATTATCTGAGGCCGAAACTCTGACAAAATCCAAATTTTCTAAAAATTAAATAAATATAGTTACAGTTCCAAGTAGGAATTTTCAAAGGTTTAGAAAATTGCATCTGATTCAGAAAACCTTTTTAATATAGGTCTCGCGGAAAAATTGAAAAACAAACATTATAAATATTAAAAATCGGATACAGACACCAAATTGCTTGAACAGTTTTAATTTTAAAAAATAGCATTTTGAAACAGAAAAAATCGGAAAAACTCAATTTTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGTAAATAAATATAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCCCGATTGTTAAAACTTGTATAAATTTCCACTAAAAATTACAATTTGAAACAGAAAAAATTGGAATAGATTGAAAAATTACAAATTTCAAAAAAATATTCTCTACAAGTCTAGAAATATAAAATTAAGACGATAGGAACAGAAAATTCGTAAAGATTTCCAAATGTTTCCATTCTAGATCCTAATCTCTTTTTCTCAAAAATGGAGTGAATTAGAGATTTCGTGTGACCGATTTCAAGAGAAAAAGGGACCACTCTGTAAAAAAACCTGGAAAATTAGACGAGGTACATTTTGATCGAAATCTCCTACGTTGCTATCTGGGAGATGCATCGAAAATAATTTTATAGAAATTACATATAAAGGAGGAAGATTCCAAAAAGAGGATTTCGGAATGCAAATTGGGGTTAATGGGGATGAACTTTTTTTTTGATTTATGGGGGGTTTTTCGGAATTTCGGAAAGTAGA</canonical>
            <polymorphic>TATTAATAGAAGCTGCACGGAATTCAAAAGTGCTTTTATCGCTAAAATTCAAAAAAGAATTGAAAATTGAAATTTCAAGAGAGAAGAAACTTTGAAAAAAACGTTATATTTTGGTTAAAGTGGGCATCGGACCCGAAATTTGAAACCCTCTCAAAATAATTATCTGAGGCCGAAACTCTGACAAAATCCAAATTTTCTAAAAATTAAATAAATATAGTTACAGTTCCAAGTAGGAATTTTCAAAGGTTTAGAAAATTGCATCTGATTCAGAAAACCTTTTTAATATAGGTCTCGCGGAAAAATTGAAAAACAAACATTATAAATATTAAAAATCGGATACAGACACCAAATTGCTTGAACAGTTTTAATTTTAAAAAATAGCATTTTGAAACAGAAAAAATCGGAAAAACTCAATTTTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGTAAATAAATAWAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCCCGATTGTTAAAACTTGTATAAATTTCCACTAAAAATTACAATTTGAAACAGAAAAAATTGGAATAGATTGAAAAATTACAAATTTCAAAAAAATATTCTCTACAAGTCTAGAAATATAAAATTAAGACGATAGGAACAGAAAATTCGTAAAGATTTCCAAATGTTTCCATTCTAGATCCTAATCTCTTTTTCTCAAAAATGGAGTGAATTAGAGATTTCGTGTGACCGATTTCAAGAGAAAAAGGGACCACTCTGTAAAAAAACCTGGAAAATTAGACGAGGTACATTTTGATCGAAATCTCCTACGTTGCTATCTGGGAGATGCATCGAAAATAATTTTATAGAAATTACATATAAAGGAGGAAGATTCCAAAAAGAGGATTTCGGAATGCAAATTGGGGTTAATGGGGATGAACTTTTTTTTTGATTTATGGGGGGTTTTTCGGAATTTCGGAAAGTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGCTTGAACAGTTTTAATTTT</pcr_primer_p1>
		<pcr_primer_p2>GTAATTTTTCAATCTATTCCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>ATTGCTTGAACAGTTTTAATTTTAAAAAATAGCATTTTGAAACAGAAAAAATCGGAAAAACTCAATTTTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGTAAATAAATATAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCCCGATTGTTAAAACTTGTATAAATTTCCACTAAAAATTACAATTTGAAACAGAAAAAATTGGAATAGATTGAAAAATTAC</canonical_amplicon>
		<polymorphic_amplicon>ATTGCTTGAACAGTTTTAATTTTAAAAAATAGCATTTTGAAACAGAAAAAATCGGAAAAACTCAATTTTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGTAAATAAATAWAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCCCGATTGTTAAAACTTGTATAAATTTCCACTAAAAATTACAATTTGAAACAGAAAAAATTGGAATAGATTGAAAAATTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29677</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>226418</contig_pos>
        <strand></strand>
        <context>CCCGATTGTT[A/T]AAACTTGTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATATAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCCCGATTGTT</left_flank>
        <right_flank>AAACTTGTATAAATTTCCACTAAAAATTACAATTTGAAACAGAAAAAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAAAAAAGAATTGAAAATTGAAATTTCAAGAGAGAAGAAACTTTGAAAAAAACGTTATATTTTGGTTAAAGTGGGCATCGGACCCGAAATTTGAAACCCTCTCAAAATAATTATCTGAGGCCGAAACTCTGACAAAATCCAAATTTTCTAAAAATTAAATAAATATAGTTACAGTTCCAAGTAGGAATTTTCAAAGGTTTAGAAAATTGCATCTGATTCAGAAAACCTTTTTAATATAGGTCTCGCGGAAAAATTGAAAAACAAACATTATAAATATTAAAAATCGGATACAGACACCAAATTGCTTGAACAGTTTTAATTTTAAAAAATAGCATTTTGAAACAGAAAAAATCGGAAAAACTCAATTTTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGTAAATAAATATAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCCCGATTGTTAAAACTTGTATAAATTTCCACTAAAAATTACAATTTGAAACAGAAAAAATTGGAATAGATTGAAAAATTACAAATTTCAAAAAAATATTCTCTACAAGTCTAGAAATATAAAATTAAGACGATAGGAACAGAAAATTCGTAAAGATTTCCAAATGTTTCCATTCTAGATCCTAATCTCTTTTTCTCAAAAATGGAGTGAATTAGAGATTTCGTGTGACCGATTTCAAGAGAAAAAGGGACCACTCTGTAAAAAAACCTGGAAAATTAGACGAGGTACATTTTGATCGAAATCTCCTACGTTGCTATCTGGGAGATGCATCGAAAATAATTTTATAGAAATTACATATAAAGGAGGAAGATTCCAAAAAGAGGATTTCGGAATGCAAATTGGGGTTAATGGGGATGAACTTTTTTTTTGATTTATGGGGGGTTTTTCGGAATTTCGGAAAGTAGAGTCTAAAAAAGGAAACTGAAAAAAATTGAAGAAAAGAAATTGGCATA</canonical>
            <polymorphic>TTCAAAAAAGAATTGAAAATTGAAATTTCAAGAGAGAAGAAACTTTGAAAAAAACGTTATATTTTGGTTAAAGTGGGCATCGGACCCGAAATTTGAAACCCTCTCAAAATAATTATCTGAGGCCGAAACTCTGACAAAATCCAAATTTTCTAAAAATTAAATAAATATAGTTACAGTTCCAAGTAGGAATTTTCAAAGGTTTAGAAAATTGCATCTGATTCAGAAAACCTTTTTAATATAGGTCTCGCGGAAAAATTGAAAAACAAACATTATAAATATTAAAAATCGGATACAGACACCAAATTGCTTGAACAGTTTTAATTTTAAAAAATAGCATTTTGAAACAGAAAAAATCGGAAAAACTCAATTTTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGTAAATAAATATAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCCCGATTGTTWAAACTTGTATAAATTTCCACTAAAAATTACAATTTGAAACAGAAAAAATTGGAATAGATTGAAAAATTACAAATTTCAAAAAAATATTCTCTACAAGTCTAGAAATATAAAATTAAGACGATAGGAACAGAAAATTCGTAAAGATTTCCAAATGTTTCCATTCTAGATCCTAATCTCTTTTTCTCAAAAATGGAGTGAATTAGAGATTTCGTGTGACCGATTTCAAGAGAAAAAGGGACCACTCTGTAAAAAAACCTGGAAAATTAGACGAGGTACATTTTGATCGAAATCTCCTACGTTGCTATCTGGGAGATGCATCGAAAATAATTTTATAGAAATTACATATAAAGGAGGAAGATTCCAAAAAGAGGATTTCGGAATGCAAATTGGGGTTAATGGGGATGAACTTTTTTTTTGATTTATGGGGGGTTTTTCGGAATTTCGGAAAGTAGAGTCTAAAAAAGGAAACTGAAAAAAATTGAAGAAAAGAAATTGGCATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>280 133 115 107 89 76 68 46 41 39 6</canonical_bands>
                <polymorphic_bands>280 156 133 107 89 76 68 46 39 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGCTTGAACAGTTTTAATTTT</pcr_primer_p1>
		<pcr_primer_p2>GTAATTTTTCAATCTATTCCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>ATTGCTTGAACAGTTTTAATTTTAAAAAATAGCATTTTGAAACAGAAAAAATCGGAAAAACTCAATTTTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGTAAATAAATATAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCCCGATTGTTAAAACTTGTATAAATTTCCACTAAAAATTACAATTTGAAACAGAAAAAATTGGAATAGATTGAAAAATTAC</canonical_amplicon>
		<polymorphic_amplicon>ATTGCTTGAACAGTTTTAATTTTAAAAAATAGCATTTTGAAACAGAAAAAATCGGAAAAACTCAATTTTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGTAAATAAATATAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCCCGATTGTTWAAACTTGTATAAATTTCCACTAAAAATTACAATTTGAAACAGAAAAAATTGGAATAGATTGAAAAATTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29678</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>226450</contig_pos>
        <strand></strand>
        <context>AAAAATTACA[A/C]TTTGAAACAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAAAGAGGCCCGATTGTTAAAACTTGTATAAATTTCCACTAAAAATTACA</left_flank>
        <right_flank>TTTGAAACAGAAAAAATTGGAATAGATTGAAAAATTACAAATTTCAAAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGAAGAAACTTTGAAAAAAACGTTATATTTTGGTTAAAGTGGGCATCGGACCCGAAATTTGAAACCCTCTCAAAATAATTATCTGAGGCCGAAACTCTGACAAAATCCAAATTTTCTAAAAATTAAATAAATATAGTTACAGTTCCAAGTAGGAATTTTCAAAGGTTTAGAAAATTGCATCTGATTCAGAAAACCTTTTTAATATAGGTCTCGCGGAAAAATTGAAAAACAAACATTATAAATATTAAAAATCGGATACAGACACCAAATTGCTTGAACAGTTTTAATTTTAAAAAATAGCATTTTGAAACAGAAAAAATCGGAAAAACTCAATTTTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGTAAATAAATATAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCCCGATTGTTAAAACTTGTATAAATTTCCACTAAAAATTACAATTTGAAACAGAAAAAATTGGAATAGATTGAAAAATTACAAATTTCAAAAAAATATTCTCTACAAGTCTAGAAATATAAAATTAAGACGATAGGAACAGAAAATTCGTAAAGATTTCCAAATGTTTCCATTCTAGATCCTAATCTCTTTTTCTCAAAAATGGAGTGAATTAGAGATTTCGTGTGACCGATTTCAAGAGAAAAAGGGACCACTCTGTAAAAAAACCTGGAAAATTAGACGAGGTACATTTTGATCGAAATCTCCTACGTTGCTATCTGGGAGATGCATCGAAAATAATTTTATAGAAATTACATATAAAGGAGGAAGATTCCAAAAAGAGGATTTCGGAATGCAAATTGGGGTTAATGGGGATGAACTTTTTTTTTGATTTATGGGGGGTTTTTCGGAATTTCGGAAAGTAGAGTCTAAAAAAGGAAACTGAAAAAAATTGAAGAAAAGAAATTGGCATAACTTCATGAGTATATTGAAACAGAGAAATGAA</canonical>
            <polymorphic>AGAGAAGAAACTTTGAAAAAAACGTTATATTTTGGTTAAAGTGGGCATCGGACCCGAAATTTGAAACCCTCTCAAAATAATTATCTGAGGCCGAAACTCTGACAAAATCCAAATTTTCTAAAAATTAAATAAATATAGTTACAGTTCCAAGTAGGAATTTTCAAAGGTTTAGAAAATTGCATCTGATTCAGAAAACCTTTTTAATATAGGTCTCGCGGAAAAATTGAAAAACAAACATTATAAATATTAAAAATCGGATACAGACACCAAATTGCTTGAACAGTTTTAATTTTAAAAAATAGCATTTTGAAACAGAAAAAATCGGAAAAACTCAATTTTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGTAAATAAATATAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCCCGATTGTTAAAACTTGTATAAATTTCCACTAAAAATTACAMTTTGAAACAGAAAAAATTGGAATAGATTGAAAAATTACAAATTTCAAAAAAATATTCTCTACAAGTCTAGAAATATAAAATTAAGACGATAGGAACAGAAAATTCGTAAAGATTTCCAAATGTTTCCATTCTAGATCCTAATCTCTTTTTCTCAAAAATGGAGTGAATTAGAGATTTCGTGTGACCGATTTCAAGAGAAAAAGGGACCACTCTGTAAAAAAACCTGGAAAATTAGACGAGGTACATTTTGATCGAAATCTCCTACGTTGCTATCTGGGAGATGCATCGAAAATAATTTTATAGAAATTACATATAAAGGAGGAAGATTCCAAAAAGAGGATTTCGGAATGCAAATTGGGGTTAATGGGGATGAACTTTTTTTTTGATTTATGGGGGGTTTTTCGGAATTTCGGAAAGTAGAGTCTAAAAAAGGAAACTGAAAAAAATTGAAGAAAAGAAATTGGCATAACTTCATGAGTATATTGAAACAGAGAAATGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>65 64 64 61 57 57 53 48 48 47 46 42 39 39 33 33 22 21 19 19 18 18 16 14 13 11 11 9 7 6</canonical_bands>
                <polymorphic_bands>65 64 64 61 57 57 53 48 48 47 46 42 39 39 33 33 22 22 21 19 19 18 18 14 13 11 11 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAAAATTGTGAGATGATATAAAA</pcr_primer_p1>
		<pcr_primer_p2>CGAATTTTCTGTTCCTATCGT</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>TTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGTAAATAAATATAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCCCGATTGTTAAAACTTGTATAAATTTCCACTAAAAATTACAATTTGAAACAGAAAAAATTGGAATAGATTGAAAAATTACAAATTTCAAAAAAATATTCTCTACAAGTCTAGAAATATAAAATTAAGACGATAGGAACAGAAAATTCG</canonical_amplicon>
		<polymorphic_amplicon>TTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGTAAATAAATATAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCCCGATTGTTAAAACTTGTATAAATTTCCACTAAAAATTACAMTTTGAAACAGAAAAAATTGGAATAGATTGAAAAATTACAAATTTCAAAAAAATATTCTCTACAAGTCTAGAAATATAAAATTAAGACGATAGGAACAGAAAATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29679</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>226533</contig_pos>
        <strand></strand>
        <context>ATATAAAATT[A/G]AGACGATAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTACAAATTTCAAAAAAATATTCTCTACAAGTCTAGAAATATAAAATT</left_flank>
        <right_flank>AGACGATAGGAACAGAAAATTCGTAAAGATTTCCAAATGTTTCCATTCTA</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGAGGCCGAAACTCTGACAAAATCCAAATTTTCTAAAAATTAAATAAATATAGTTACAGTTCCAAGTAGGAATTTTCAAAGGTTTAGAAAATTGCATCTGATTCAGAAAACCTTTTTAATATAGGTCTCGCGGAAAAATTGAAAAACAAACATTATAAATATTAAAAATCGGATACAGACACCAAATTGCTTGAACAGTTTTAATTTTAAAAAATAGCATTTTGAAACAGAAAAAATCGGAAAAACTCAATTTTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGTAAATAAATATAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCCCGATTGTTAAAACTTGTATAAATTTCCACTAAAAATTACAATTTGAAACAGAAAAAATTGGAATAGATTGAAAAATTACAAATTTCAAAAAAATATTCTCTACAAGTCTAGAAATATAAAATTAAGACGATAGGAACAGAAAATTCGTAAAGATTTCCAAATGTTTCCATTCTAGATCCTAATCTCTTTTTCTCAAAAATGGAGTGAATTAGAGATTTCGTGTGACCGATTTCAAGAGAAAAAGGGACCACTCTGTAAAAAAACCTGGAAAATTAGACGAGGTACATTTTGATCGAAATCTCCTACGTTGCTATCTGGGAGATGCATCGAAAATAATTTTATAGAAATTACATATAAAGGAGGAAGATTCCAAAAAGAGGATTTCGGAATGCAAATTGGGGTTAATGGGGATGAACTTTTTTTTTGATTTATGGGGGGTTTTTCGGAATTTCGGAAAGTAGAGTCTAAAAAAGGAAACTGAAAAAAATTGAAGAAAAGAAATTGGCATAACTTCATGAGTATATTGAAACAGAGAAATGAAACCAAAATATTCTTGTGTTTTGCTGTCTCACACAATTGGCTCAAATTATTATTTAGTGCATCAATATGCTGAGTCAACACTGT</canonical>
            <polymorphic>TCTGAGGCCGAAACTCTGACAAAATCCAAATTTTCTAAAAATTAAATAAATATAGTTACAGTTCCAAGTAGGAATTTTCAAAGGTTTAGAAAATTGCATCTGATTCAGAAAACCTTTTTAATATAGGTCTCGCGGAAAAATTGAAAAACAAACATTATAAATATTAAAAATCGGATACAGACACCAAATTGCTTGAACAGTTTTAATTTTAAAAAATAGCATTTTGAAACAGAAAAAATCGGAAAAACTCAATTTTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGTAAATAAATATAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCCCGATTGTTAAAACTTGTATAAATTTCCACTAAAAATTACAATTTGAAACAGAAAAAATTGGAATAGATTGAAAAATTACAAATTTCAAAAAAATATTCTCTACAAGTCTAGAAATATAAAATTRAGACGATAGGAACAGAAAATTCGTAAAGATTTCCAAATGTTTCCATTCTAGATCCTAATCTCTTTTTCTCAAAAATGGAGTGAATTAGAGATTTCGTGTGACCGATTTCAAGAGAAAAAGGGACCACTCTGTAAAAAAACCTGGAAAATTAGACGAGGTACATTTTGATCGAAATCTCCTACGTTGCTATCTGGGAGATGCATCGAAAATAATTTTATAGAAATTACATATAAAGGAGGAAGATTCCAAAAAGAGGATTTCGGAATGCAAATTGGGGTTAATGGGGATGAACTTTTTTTTTGATTTATGGGGGGTTTTTCGGAATTTCGGAAAGTAGAGTCTAAAAAAGGAAACTGAAAAAAATTGAAGAAAAGAAATTGGCATAACTTCATGAGTATATTGAAACAGAGAAATGAAACCAAAATATTCTTGTGTTTTGCTGTCTCACACAATTGGCTCAAATTATTATTTAGTGCATCAATATGCTGAGTCAACACTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>280 222 133 115 76 46 42 41 39 6</canonical_bands>
                <polymorphic_bands>395 222 133 76 46 42 41 39 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTGGAATAGATTGAAAAATTAC</pcr_primer_p1>
		<pcr_primer_p2>AACGTAGGAGATTTCGATCA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>AAATTGGAATAGATTGAAAAATTACAAATTTCAAAAAAATATTCTCTACAAGTCTAGAAATATAAAATTAAGACGATAGGAACAGAAAATTCGTAAAGATTTCCAAATGTTTCCATTCTAGATCCTAATCTCTTTTTCTCAAAAATGGAGTGAATTAGAGATTTCGTGTGACCGATTTCAAGAGAAAAAGGGACCACTCTGTAAAAAAACCTGGAAAATTAGACGAGGTACATTTTGATCGAAATCTCCTACGTT</canonical_amplicon>
		<polymorphic_amplicon>AAATTGGAATAGATTGAAAAATTACAAATTTCAAAAAAATATTCTCTACAAGTCTAGAAATATAAAATTRAGACGATAGGAACAGAAAATTCGTAAAGATTTCCAAATGTTTCCATTCTAGATCCTAATCTCTTTTTCTCAAAAATGGAGTGAATTAGAGATTTCGTGTGACCGATTTCAAGAGAAAAAGGGACCACTCTGTAAAAAAACCTGGAAAATTAGACGAGGTACATTTTGATCGAAATCTCCTACGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29680</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>226571</contig_pos>
        <strand></strand>
        <context>GATTTCCAAA[T/A]GTTTCCATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAATATAAAATTAAGACGATAGGAACAGAAAATTCGTAAAGATTTCCAAA</left_flank>
        <right_flank>GTTTCCATTCTAGATCCTAATCTCTTTTTCTCAAAAATGGAGTGAATTAG</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTAAATAAATATAGTTACAGTTCCAAGTAGGAATTTTCAAAGGTTTAGAAAATTGCATCTGATTCAGAAAACCTTTTTAATATAGGTCTCGCGGAAAAATTGAAAAACAAACATTATAAATATTAAAAATCGGATACAGACACCAAATTGCTTGAACAGTTTTAATTTTAAAAAATAGCATTTTGAAACAGAAAAAATCGGAAAAACTCAATTTTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGTAAATAAATATAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCCCGATTGTTAAAACTTGTATAAATTTCCACTAAAAATTACAATTTGAAACAGAAAAAATTGGAATAGATTGAAAAATTACAAATTTCAAAAAAATATTCTCTACAAGTCTAGAAATATAAAATTAAGACGATAGGAACAGAAAATTCGTAAAGATTTCCAAATGTTTCCATTCTAGATCCTAATCTCTTTTTCTCAAAAATGGAGTGAATTAGAGATTTCGTGTGACCGATTTCAAGAGAAAAAGGGACCACTCTGTAAAAAAACCTGGAAAATTAGACGAGGTACATTTTGATCGAAATCTCCTACGTTGCTATCTGGGAGATGCATCGAAAATAATTTTATAGAAATTACATATAAAGGAGGAAGATTCCAAAAAGAGGATTTCGGAATGCAAATTGGGGTTAATGGGGATGAACTTTTTTTTTGATTTATGGGGGGTTTTTCGGAATTTCGGAAAGTAGAGTCTAAAAAAGGAAACTGAAAAAAATTGAAGAAAAGAAATTGGCATAACTTCATGAGTATATTGAAACAGAGAAATGAAACCAAAATATTCTTGTGTTTTGCTGTCTCACACAATTGGCTCAAATTATTATTTAGTGCATCAATATGCTGAGTCAACACTGTTTGTTTTTCTCTTATCTTCCTTTTTGTTCAAAATAAGT</canonical>
            <polymorphic>AAATTAAATAAATATAGTTACAGTTCCAAGTAGGAATTTTCAAAGGTTTAGAAAATTGCATCTGATTCAGAAAACCTTTTTAATATAGGTCTCGCGGAAAAATTGAAAAACAAACATTATAAATATTAAAAATCGGATACAGACACCAAATTGCTTGAACAGTTTTAATTTTAAAAAATAGCATTTTGAAACAGAAAAAATCGGAAAAACTCAATTTTGAAAATTGTGAGATGATATAAAAATTATAGGTTCCAAAAAACTTGAGATTGTAGAGTGTTATTTCGATACGTAAATAAATATAAATTAATACTACTATATTTCTAGTGGATAAAGAGGCCCGATTGTTAAAACTTGTATAAATTTCCACTAAAAATTACAATTTGAAACAGAAAAAATTGGAATAGATTGAAAAATTACAAATTTCAAAAAAATATTCTCTACAAGTCTAGAAATATAAAATTAAGACGATAGGAACAGAAAATTCGTAAAGATTTCCAAAWGTTTCCATTCTAGATCCTAATCTCTTTTTCTCAAAAATGGAGTGAATTAGAGATTTCGTGTGACCGATTTCAAGAGAAAAAGGGACCACTCTGTAAAAAAACCTGGAAAATTAGACGAGGTACATTTTGATCGAAATCTCCTACGTTGCTATCTGGGAGATGCATCGAAAATAATTTTATAGAAATTACATATAAAGGAGGAAGATTCCAAAAAGAGGATTTCGGAATGCAAATTGGGGTTAATGGGGATGAACTTTTTTTTTGATTTATGGGGGGTTTTTCGGAATTTCGGAAAGTAGAGTCTAAAAAAGGAAACTGAAAAAAATTGAAGAAAAGAAATTGGCATAACTTCATGAGTATATTGAAACAGAGAAATGAAACCAAAATATTCTTGTGTTTTGCTGTCTCACACAATTGGCTCAAATTATTATTTAGTGCATCAATATGCTGAGTCAACACTGTTTGTTTTTCTCTTATCTTCCTTTTTGTTCAAAATAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTGGAATAGATTGAAAAATTAC</pcr_primer_p1>
		<pcr_primer_p2>AACGTAGGAGATTTCGATCA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>AAATTGGAATAGATTGAAAAATTACAAATTTCAAAAAAATATTCTCTACAAGTCTAGAAATATAAAATTAAGACGATAGGAACAGAAAATTCGTAAAGATTTCCAAATGTTTCCATTCTAGATCCTAATCTCTTTTTCTCAAAAATGGAGTGAATTAGAGATTTCGTGTGACCGATTTCAAGAGAAAAAGGGACCACTCTGTAAAAAAACCTGGAAAATTAGACGAGGTACATTTTGATCGAAATCTCCTACGTT</canonical_amplicon>
		<polymorphic_amplicon>AAATTGGAATAGATTGAAAAATTACAAATTTCAAAAAAATATTCTCTACAAGTCTAGAAATATAAAATTAAGACGATAGGAACAGAAAATTCGTAAAGATTTCCAAAWGTTTCCATTCTAGATCCTAATCTCTTTTTCTCAAAAATGGAGTGAATTAGAGATTTCGTGTGACCGATTTCAAGAGAAAAAGGGACCACTCTGTAAAAAAACCTGGAAAATTAGACGAGGTACATTTTGATCGAAATCTCCTACGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29681</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>227349</contig_pos>
        <strand>+</strand>
        <context>AATATTACAG[C/T]TCCGAGAAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCGAGAATTTCAAAAATCCAACATTTATCAAAACCTGAAAATATTACAG</left_flank>
        <right_flank>TCCGAGAAGTTATGTTCAGAGGTTTAGAAAAATGAAATATGTTTGTAGTG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGGAATTTCGGAAAGTAGAGTCTAAAAAAGGAAACTGAAAAAAATTGAAGAAAAGAAATTGGCATAACTTCATGAGTATATTGAAACAGAGAAATGAAACCAAAATATTCTTGTGTTTTGCTGTCTCACACAATTGGCTCAAATTATTATTTAGTGCATCAATATGCTGAGTCAACACTGTTTGTTTTTCTCTTATCTTCCTTTTTGTTCAAAATAAGTTCACAGATCAATTACAAATTTCTTCTCAAAGTCAGAAAACAGAATGAAAGGGACACAATTTTGGAACATGCATCTCAAACTGAAGTGTAACTAAATTCTGAACCTTTCCATTAGGATCTGAAACCGAAAGTTTGAAAATCTGAAACCGAAAGTTCGAATTTTGTTAAAATGAACTTCTTCAAAACAACCCAAATTTTGAAAAAAAAATCAAAAATTTGTTATCTGAAACCGAGAATTTCAAAAATCCAACATTTATCAAAACCTGAAAATATTACAGCTCCGAGAAGTTATGTTCAGAGGTTTAGAAAAATGAAATATGTTTGTAGTGTCCCACGTATCCTGTAGGCTATCAAAAAGTTTCAACTAACAAAATGTTTATCAGATTATCAAAAAAAGAATTTATCAGTTGTCTACTTTTTGATATCAGTTACAGGTACAAAGATAAGTTGCGTCAAAAGTAGAGAACCCATCTATTACAGGAAACTTTGAATAACTGCAAATCAAGAAAAGTCACAAACAAAAATCAGAATTTTGTTGGGATGGGCTACTACAAAACAACCCAAACTTTTAAATCATCTAAAATTATCCTTACAAAATCAGGGCCCGAGTTCTTCAAATTTGAATTTTTTTTTGAAATTTCAGAAAAAAAATTCAAAGCTTTTCGTGAGAAATTTTTTTTTTTCACAAAAGATATCAAAAAGTGATCAACTGACAAAATGTTTATCATATTATCAAAAATATTTTCTGTTTTTTTCATAGGATGCTGTTTAAATGTCAT</canonical>
            <polymorphic>TTTCGGAATTTCGGAAAGTAGAGTCTAAAAAAGGAAACTGAAAAAAATTGAAGAAAAGAAATTGGCATAACTTCATGAGTATATTGAAACAGAGAAATGAAACCAAAATATTCTTGTGTTTTGCTGTCTCACACAATTGGCTCAAATTATTATTTAGTGCATCAATATGCTGAGTCAACACTGTTTGTTTTTCTCTTATCTTCCTTTTTGTTCAAAATAAGTTCACAGATCAATTACAAATTTCTTCTCAAAGTCAGAAAACAGAATGAAAGGGACACAATTTTGGAACATGCATCTCAAACTGAAGTGTAACTAAATTCTGAACCTTTCCATTAGGATCTGAAACCGAAAGTTTGAAAATCTGAAACCGAAAGTTCGAATTTTGTTAAAATGAACTTCTTCAAAACAACCCAAATTTTGAAAAAAAAATCAAAAATTTGTTATCTGAAACCGAGAATTTCAAAAATCCAACATTTATCAAAACCTGAAAATATTACAGYTCCGAGAAGTTATGTTCAGAGGTTTAGAAAAATGAAATATGTTTGTAGTGTCCCACGTATCCTGTAGGCTATCAAAAAGTTTCAACTAACAAAATGTTTATCAGATTATCAAAAAAAGAATTTATCAGTTGTCTACTTTTTGATATCAGTTACAGGTACAAAGATAAGTTGCGTCAAAAGTAGAGAACCCATCTATTACAGGAAACTTTGAATAACTGCAAATCAAGAAAAGTCACAAACAAAAATCAGAATTTTGTTGGGATGGGCTACTACAAAACAACCCAAACTTTTAAATCATCTAAAATTATCCTTACAAAATCAGGGCCCGAGTTCTTCAAATTTGAATTTTTTTTTGAAATTTCAGAAAAAAAATTCAAAGCTTTTCGTGAGAAATTTTTTTTTTTCACAAAAGATATCAAAAAGTGATCAACTGACAAAATGTTTATCATATTATCAAAAATATTTTCTGTTTTTTTCATAGGATGCTGTTTAAATGTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>499 380 121</canonical_bands>
                <polymorphic_bands>879 121</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>359 198 140 121 69 58 55</canonical_bands>
                <polymorphic_bands>428 198 140 121 58 55</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAAATTCTGAACCTTTCCATTA</pcr_primer_p1>
		<pcr_primer_p2>TACGTGGGACACTACAAACATA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTAAATTCTGAACCTTTCCATTAGGATCTGAAACCGAAAGTTTGAAAATCTGAAACCGAAAGTTCGAATTTTGTTAAAATGAACTTCTTCAAAACAACCCAAATTTTGAAAAAAAAATCAAAAATTTGTTATCTGAAACCGAGAATTTCAAAAATCCAACATTTATCAAAACCTGAAAATATTACAGCTCCGAGAAGTTATGTTCAGAGGTTTAGAAAAATGAAATATGTTTGTAGTGTCCCACGTA</canonical_amplicon>
		<polymorphic_amplicon>CTAAATTCTGAACCTTTCCATTAGGATCTGAAACCGAAAGTTTGAAAATCTGAAACCGAAAGTTCGAATTTTGTTAAAATGAACTTCTTCAAAACAACCCAAATTTTGAAAAAAAAATCAAAAATTTGTTATCTGAAACCGAGAATTTCAAAAATCCAACATTTATCAAAACCTGAAAATATTACAGYTCCGAGAAGTTATGTTCAGAGGTTTAGAAAAATGAAATATGTTTGTAGTGTCCCACGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29682</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>243526</contig_pos>
        <strand>+</strand>
        <context>AACTAGTTGG[A/G]GTGGATTCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTAAGGTTGAACTGGAAGTTGAAGATTCGGAAGTCCAGAAACTAGTTGG</left_flank>
        <right_flank>GTGGATTCAGAAGGCGTTAATGATGTCTGAGATTCAGAATTTGTGGATTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAAATTATCGTGGAAAGAGAACCAGCATCGATTAGATACTTGTGGTGGAGCAGATTTAAGTGAGCTATAGAGTTCTTGAATAAGAAATTCCTTTTTTCTATTCAGAACAAAACCTCGAATGGTATTGGAAGTTTTTCGTTCGTGAAGGATCTACTTGTTTTTCCTCGGAAGCTATCGTTATATCTGTTTTTTTTTTCATTTTTTATGGTTCTTAACAAATTCTTATATCTGCATTCATTTATTCAACAAGAAAACCAAAAATAAATCATTAACAGAATCCAGAATTTCTGATTTTCAGAACTATTCCTATAATGAGATTCCTTCCTGGACTCCACTTGTCGATACAAGTAGAAAAATATATCTTCGGTTTTCTGTGCGTTGGATTCTTCTGGAGGATCTTCTGGAGGATCTTCTGGAGGAGGCGTCGAATGCTCAGATGACGTGAAAGGTAAGGTTGAACTGGAAGTTGAAGATTCGGAAGTCCAGAAACTAGTTGGAGTGGATTCAGAAGGCGTTAATGATGTCTGAGATTCAGAATTTGTGGATTCTGAAGTCGTGGTTGTTTCCGGAATACTCGGTGTATCCTCAAATGAGCAGACTCCAGCAGCCGAGCAAATATCCCTATAAAAGTATTCCATGCTTAGTAGAATGCTTTGTTTGGTGTCCGGACGGTAGTAACCTGAATAATTCAAGATTTAGAGTCGATAATAAATTCGTAAGCGTTCACCTGTCGATCCCATGCCCACTATGGTCCATTTTGTTACATTTAATTGCTTTATCAACACACTTCCCTGCACATCCTTATCATAATGAGGTCCACAAGGAAAAAAACTTCCAAACCCTTGAATCTTAATTTCTCACTATTTCTAGCTTCCACAGCAAACTCTCTTACCACACATGGCTCTTCTCTAAAAATCATTGGTTCATTTTCAGAATTGAACGCGTATTTTGTCGCCCAACCGTCCACAGCATTATGGTCTCTCGGATTTACTAAACAT</canonical>
            <polymorphic>GGAAAATTATCGTGGAAAGAGAACCAGCATCGATTAGATACTTGTGGTGGAGCAGATTTAAGTGAGCTATAGAGTTCTTGAATAAGAAATTCCTTTTTTCTATTCAGAACAAAACCTCGAATGGTATTGGAAGTTTTTCGTTCGTGAAGGATCTACTTGTTTTTCCTCGGAAGCTATCGTTATATCTGTTTTTTTTTTCATTTTTTATGGTTCTTAACAAATTCTTATATCTGCATTCATTTATTCAACAAGAAAACCAAAAATAAATCATTAACAGAATCCAGAATTTCTGATTTTCAGAACTATTCCTATAATGAGATTCCTTCCTGGACTCCACTTGTCGATACAAGTAGAAAAATATATCTTCGGTTTTCTGTGCGTTGGATTCTTCTGGAGGATCTTCTGGAGGATCTTCTGGAGGAGGCGTCGAATGCTCAGATGACGTGAAAGGTAAGGTTGAACTGGAAGTTGAAGATTCGGAAGTCCAGAAACTAGTTGGRGTGGATTCAGAAGGCGTTAATGATGTCTGAGATTCAGAATTTGTGGATTCTGAAGTCGTGGTTGTTTCCGGAATACTCGGTGTATCCTCAAATGAGCAGACTCCAGCAGCCGAGCAAATATCCCTATAAAAGTATTCCATGCTTAGTAGAATGCTTTGTTTGGTGTCCGGACGGTAGTAACCTGAATAATTCAAGATTTAGAGTCGATAATAAATTCGTAAGCGTTCACCTGTCGATCCCATGCCCACTATGGTCCATTTTGTTACATTTAATTGCTTTATCAACACACTTCCCTGCACATCCTTATCATAATGAGGTCCACAAGGAAAAAAACTTCCAAACCCTTGAATCTTAATTTCTCACTATTTCTAGCTTCCACAGCAAACTCTCTTACCACACATGGCTCTTCTCTAAAAATCATTGGTTCATTTTCAGAATTGAACGCGTATTTTGTCGCCCAACCGTCCACAGCATTATGGTCTCTCGGATTTACTAAACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAATATATCTTCGGTTTTCTG</pcr_primer_p1>
		<pcr_primer_p2>TCTGCTCATTTGAGGATACAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAAAATATATCTTCGGTTTTCTGTGCGTTGGATTCTTCTGGAGGATCTTCTGGAGGATCTTCTGGAGGAGGCGTCGAATGCTCAGATGACGTGAAAGGTAAGGTTGAACTGGAAGTTGAAGATTCGGAAGTCCAGAAACTAGTTGGAGTGGATTCAGAAGGCGTTAATGATGTCTGAGATTCAGAATTTGTGGATTCTGAAGTCGTGGTTGTTTCCGGAATACTCGGTGTATCCTCAAATGAGCAGA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAATATATCTTCGGTTTTCTGTGCGTTGGATTCTTCTGGAGGATCTTCTGGAGGATCTTCTGGAGGAGGCGTCGAATGCTCAGATGACGTGAAAGGTAAGGTTGAACTGGAAGTTGAAGATTCGGAAGTCCAGAAACTAGTTGGRGTGGATTCAGAAGGCGTTAATGATGTCTGAGATTCAGAATTTGTGGATTCTGAAGTCGTGGTTGTTTCCGGAATACTCGGTGTATCCTCAAATGAGCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29683</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>243743</contig_pos>
        <strand>+</strand>
        <context>ATAATAAATT[A/C]GTAAGCGTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCGGACGGTAGTAACCTGAATAATTCAAGATTTAGAGTCGATAATAAATT</left_flank>
        <right_flank>GTAAGCGTTCACCTGTCGATCCCATGCCCACTATGGTCCATTTTGTTACA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAATTCTTATATCTGCATTCATTTATTCAACAAGAAAACCAAAAATAAATCATTAACAGAATCCAGAATTTCTGATTTTCAGAACTATTCCTATAATGAGATTCCTTCCTGGACTCCACTTGTCGATACAAGTAGAAAAATATATCTTCGGTTTTCTGTGCGTTGGATTCTTCTGGAGGATCTTCTGGAGGATCTTCTGGAGGAGGCGTCGAATGCTCAGATGACGTGAAAGGTAAGGTTGAACTGGAAGTTGAAGATTCGGAAGTCCAGAAACTAGTTGGAGTGGATTCAGAAGGCGTTAATGATGTCTGAGATTCAGAATTTGTGGATTCTGAAGTCGTGGTTGTTTCCGGAATACTCGGTGTATCCTCAAATGAGCAGACTCCAGCAGCCGAGCAAATATCCCTATAAAAGTATTCCATGCTTAGTAGAATGCTTTGTTTGGTGTCCGGACGGTAGTAACCTGAATAATTCAAGATTTAGAGTCGATAATAAATTCGTAAGCGTTCACCTGTCGATCCCATGCCCACTATGGTCCATTTTGTTACATTTAATTGCTTTATCAACACACTTCCCTGCACATCCTTATCATAATGAGGTCCACAAGGAAAAAAACTTCCAAACCCTTGAATCTTAATTTCTCACTATTTCTAGCTTCCACAGCAAACTCTCTTACCACACATGGCTCTTCTCTAAAAATCATTGGTTCATTTTCAGAATTGAACGCGTATTTTGTCGCCCAACCGTCCACAGCATTATGGTCTCTCGGATTTACTAAACATGGATAATTGTAAGTGTGATTAATTTTATCAAGGATTTCGAATTCCACTATCATTTGAGTGTATCGTTGTTCGAAGTAGAGTGGGGATCTAATTGAAGTACTGCAAGCTTTTAGAACGTATCCTTTTGTTGGTGAGACTTTTATAGAATCACATTTCGTGTTGGAGATCTTATAGCACTCTGGAGGTCGGAATACTATATGTTTGACGAAGTCGTCTG</canonical>
            <polymorphic>CAAATTCTTATATCTGCATTCATTTATTCAACAAGAAAACCAAAAATAAATCATTAACAGAATCCAGAATTTCTGATTTTCAGAACTATTCCTATAATGAGATTCCTTCCTGGACTCCACTTGTCGATACAAGTAGAAAAATATATCTTCGGTTTTCTGTGCGTTGGATTCTTCTGGAGGATCTTCTGGAGGATCTTCTGGAGGAGGCGTCGAATGCTCAGATGACGTGAAAGGTAAGGTTGAACTGGAAGTTGAAGATTCGGAAGTCCAGAAACTAGTTGGAGTGGATTCAGAAGGCGTTAATGATGTCTGAGATTCAGAATTTGTGGATTCTGAAGTCGTGGTTGTTTCCGGAATACTCGGTGTATCCTCAAATGAGCAGACTCCAGCAGCCGAGCAAATATCCCTATAAAAGTATTCCATGCTTAGTAGAATGCTTTGTTTGGTGTCCGGACGGTAGTAACCTGAATAATTCAAGATTTAGAGTCGATAATAAATTMGTAAGCGTTCACCTGTCGATCCCATGCCCACTATGGTCCATTTTGTTACATTTAATTGCTTTATCAACACACTTCCCTGCACATCCTTATCATAATGAGGTCCACAAGGAAAAAAACTTCCAAACCCTTGAATCTTAATTTCTCACTATTTCTAGCTTCCACAGCAAACTCTCTTACCACACATGGCTCTTCTCTAAAAATCATTGGTTCATTTTCAGAATTGAACGCGTATTTTGTCGCCCAACCGTCCACAGCATTATGGTCTCTCGGATTTACTAAACATGGATAATTGTAAGTGTGATTAATTTTATCAAGGATTTCGAATTCCACTATCATTTGAGTGTATCGTTGTTCGAAGTAGAGTGGGGATCTAATTGAAGTACTGCAAGCTTTTAGAACGTATCCTTTTGTTGGTGAGACTTTTATAGAATCACATTTCGTGTTGGAGATCTTATAGCACTCTGGAGGTCGGAATACTATATGTTTGACGAAGTCGTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>327 253 178 175 65 2</canonical_bands>
                <polymorphic_bands>502 253 178 65 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAGCAAATATCCCTATAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>AGAAATTAAGATTCAAGGGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGAGCAAATATCCCTATAAAAGTATTCCATGCTTAGTAGAATGCTTTGTTTGGTGTCCGGACGGTAGTAACCTGAATAATTCAAGATTTAGAGTCGATAATAAATTCGTAAGCGTTCACCTGTCGATCCCATGCCCACTATGGTCCATTTTGTTACATTTAATTGCTTTATCAACACACTTCCCTGCACATCCTTATCATAATGAGGTCCACAAGGAAAAAAACTTCCAAACCCTTGAATCTTAATTTCT</canonical_amplicon>
		<polymorphic_amplicon>CGAGCAAATATCCCTATAAAAGTATTCCATGCTTAGTAGAATGCTTTGTTTGGTGTCCGGACGGTAGTAACCTGAATAATTCAAGATTTAGAGTCGATAATAAATTMGTAAGCGTTCACCTGTCGATCCCATGCCCACTATGGTCCATTTTGTTACATTTAATTGCTTTATCAACACACTTCCCTGCACATCCTTATCATAATGAGGTCCACAAGGAAAAAAACTTCCAAACCCTTGAATCTTAATTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29684</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>268730</contig_pos>
        <strand>+</strand>
        <context>ATGATGAATG[C/T]TTTTTTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGAGCATGTATAATATTTTATTTTAAATTTGACAAAAGTATGATGAATG</left_flank>
        <right_flank>TTTTTTTTTCATTTCTATGACTCATAGTATGAATTTCATACCTCTAACCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCGTTCCCATATTCTGGCAACTAGCAGTCACTTCTGTCAGATTTGAATTATAAGACTCGAAACAGTATGTCATATTGTCATCACACACATTTTGGACGAAATTTGAAGAGTCTTCTCCGTTTACAATCCCTCGGGAACCTGCAAAAAAAATAGGGATCATAAAGGGAATAGGAGAATTGGAAAATTATATCTGGTCAAAATTTCAAATGTTAGTGATATTCTAGCTAATAAAATGTAAAGTTTTCGTGTTCGATTAGAGCGCATTTCCTCACCTTCGTAGCACTTTAATGTTGATGCTGATATGATAAAAAGTGTTGATAGAAAGATTAGTGATCGTAGAGACATCTGAAATTAGCGAATTTCAAATCAGCAATATAATCGTCTGGGCTTAAATGAAAAATTGAAGAAAGCGAGAACAATGAAAAAAAGAAAGTCTGAAAATATTGTCTGAGCATGTATAATATTTTATTTTAAATTTGACAAAAGTATGATGAATGTTTTTTTTTTCATTTCTATGACTCATAGTATGAATTTCATACCTCTAACCATAGAAAAGTAACATTTCTAACAGATACGAAATTCTAAAAATATAACTTGTATGTTAAAAATAAACAGAAGAAAAAACTCCCCATGAGCAAACTCACTAGCAGAAGGGAAATTTGTCATTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGGAAACCGCATAGCTCAACCGGTAGATGCGTGACACCTTCAATTTTTGACCCACAGGTTCAACTTCTCGAGGAACTTCTTTTAACAAAACTGTCTAGATGTCGTTCAATGTCCTTCCGCCTTCAAATGTGTCTGACAAGAACTTTTGAAACGGGGAAACTTTAATAAATTGAAACGACACAGTCTTTCGAGATTGAAATTCATAAAAGCTGACTTTATCTTATGCTGATTTTAAAATAGTGATTGTTTGCTTACAATTTAAAAAAAAAAAAAGCGAAAAAAGATTT</canonical>
            <polymorphic>ATCCGTTCCCATATTCTGGCAACTAGCAGTCACTTCTGTCAGATTTGAATTATAAGACTCGAAACAGTATGTCATATTGTCATCACACACATTTTGGACGAAATTTGAAGAGTCTTCTCCGTTTACAATCCCTCGGGAACCTGCAAAAAAAATAGGGATCATAAAGGGAATAGGAGAATTGGAAAATTATATCTGGTCAAAATTTCAAATGTTAGTGATATTCTAGCTAATAAAATGTAAAGTTTTCGTGTTCGATTAGAGCGCATTTCCTCACCTTCGTAGCACTTTAATGTTGATGCTGATATGATAAAAAGTGTTGATAGAAAGATTAGTGATCGTAGAGACATCTGAAATTAGCGAATTTCAAATCAGCAATATAATCGTCTGGGCTTAAATGAAAAATTGAAGAAAGCGAGAACAATGAAAAAAAGAAAGTCTGAAAATATTGTCTGAGCATGTATAATATTTTATTTTAAATTTGACAAAAGTATGATGAATGYTTTTTTTTTCATTTCTATGACTCATAGTATGAATTTCATACCTCTAACCATAGAAAAGTAACATTTCTAACAGATACGAAATTCTAAAAATATAACTTGTATGTTAAAAATAAACAGAAGAAAAAACTCCCCATGAGCAAACTCACTAGCAGAAGGGAAATTTGTCATTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGGAAACCGCATAGCTCAACCGGTAGATGCGTGACACCTTCAATTTTTGACCCACAGGTTCAACTTCTCGAGGAACTTCTTTTAACAAAACTGTCTAGATGTCGTTCAATGTCCTTCCGCCTTCAAATGTGTCTGACAAGAACTTTTGAAACGGGGAAACTTTAATAAATTGAAACGACACAGTCTTTCGAGATTGAAATTCATAAAAGCTGACTTTATCTTATGCTGATTTTAAAATAGTGATTGTTTGCTTACAATTTAAAAAAAAAAAAAGCGAAAAAAGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGATCGTAGAGACATCTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTCGTATCTGTTAGAAATGTTACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGATCGTAGAGACATCTGAAATTAGCGAATTTCAAATCAGCAATATAATCGTCTGGGCTTAAATGAAAAATTGAAGAAAGCGAGAACAATGAAAAAAAGAAAGTCTGAAAATATTGTCTGAGCATGTATAATATTTTATTTTAAATTTGACAAAAGTATGATGAATGTTTTTTTTTTCATTTCTATGACTCATAGTATGAATTTCATACCTCTAACCATAGAAAAGTAACATTTCTAACAGATACGAAA</canonical_amplicon>
		<polymorphic_amplicon>GTGATCGTAGAGACATCTGAAATTAGCGAATTTCAAATCAGCAATATAATCGTCTGGGCTTAAATGAAAAATTGAAGAAAGCGAGAACAATGAAAAAAAGAAAGTCTGAAAATATTGTCTGAGCATGTATAATATTTTATTTTAAATTTGACAAAAGTATGATGAATGYTTTTTTTTTCATTTCTATGACTCATAGTATGAATTTCATACCTCTAACCATAGAAAAGTAACATTTCTAACAGATACGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29685</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>325406</contig_pos>
        <strand>+</strand>
        <context>ATAATTCACA[A/C]CTTTTTTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCAATAATCAGTTCTTGAAAATAATTCATGTTATTTTTGTATAATTCACA</left_flank>
        <right_flank>CTTTTTTTTGTACAAATGCATCCGAAAGAGATTAGCCGCTTCAAAGTTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTCCAATTTGTCCACACCTTCCAAGGGATAGGCAGAATTTTAAGAAACCATTTTTTGCATACTTGTAACGGGCCGGGATTTTTCCGGAATTTCGGAGGCCCGGCCCGGCCCGGCGGGCCCGTCATTTCACTAGTTTTGAAATTTTCAAAAAACACATCAGGGGGGACCCTTATGTGATTTTTTTCGACCAAAATTTTTTTTCGAGTTTTTTCGATATTTTTAGAGCAAACAGACAAACAATCCAAAATAACAAAAAAATGAAGAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACATAATTTTTGAGACCGGGCCTTCCGGGCCGGGCCCGGGCCTTGAGAATTTCCTCAGGCTTTTTTTGAAAATTAATAATGTGCTATCACCCTTCAACTCTGAAATGTTCCGTTTCACTACAATATTCCTTTTTGTATGTTGTTTATTCAATAATCAGTTCTTGAAAATAATTCATGTTATTTTTGTATAATTCACACCTTTTTTTTGTACAAATGCATCCGAAAGAGATTAGCCGCTTCAAAGTTCGGTACTTGATTAGTTTTAAGCGGTATATCTCATTTGGATGAATTTTTACAAGAAAGTTGTCAACTATAAAATTGAAGGTTTCTTTGTTAAAGGAAGCCAGACATTTAAAAAAAAGTTTTCCTGATATTTTGCCTAAAGAACCCCCATGAGGAGTTGAACTCATGCTGGTCAGCTCAGGGGTACACAGGTGATTCGCGCAGCGTCTATAATAGCTGAAATATTGTTCGCGGAAAGTCGCCATGCGTACATCGGAACATGCCTGCTGCAGGCCATTTACAGACCAATCGCGAACGCGCCACCGCAAACGACCAATATTCGCCCTATCGCGAGCAAATCTCCTACAATTGGCTTGTCGCGAGAGCAATAATTGGCATATATTGTTTCGAATCTGGAAGCTAGCAGCTGCTAAAAATTGTTTATTACACAGAAAAAACAATGAAAAGCGAAAAAA</canonical>
            <polymorphic>CCTTCCAATTTGTCCACACCTTCCAAGGGATAGGCAGAATTTTAAGAAACCATTTTTTGCATACTTGTAACGGGCCGGGATTTTTCCGGAATTTCGGAGGCCCGGCCCGGCCCGGCGGGCCCGTCATTTCACTAGTTTTGAAATTTTCAAAAAACACATCAGGGGGGACCCTTATGTGATTTTTTTCGACCAAAATTTTTTTTCGAGTTTTTTCGATATTTTTAGAGCAAACAGACAAACAATCCAAAATAACAAAAAAATGAAGAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACATAATTTTTGAGACCGGGCCTTCCGGGCCGGGCCCGGGCCTTGAGAATTTCCTCAGGCTTTTTTTGAAAATTAATAATGTGCTATCACCCTTCAACTCTGAAATGTTCCGTTTCACTACAATATTCCTTTTTGTATGTTGTTTATTCAATAATCAGTTCTTGAAAATAATTCATGTTATTTTTGTATAATTCACAMCTTTTTTTTGTACAAATGCATCCGAAAGAGATTAGCCGCTTCAAAGTTCGGTACTTGATTAGTTTTAAGCGGTATATCTCATTTGGATGAATTTTTACAAGAAAGTTGTCAACTATAAAATTGAAGGTTTCTTTGTTAAAGGAAGCCAGACATTTAAAAAAAAGTTTTCCTGATATTTTGCCTAAAGAACCCCCATGAGGAGTTGAACTCATGCTGGTCAGCTCAGGGGTACACAGGTGATTCGCGCAGCGTCTATAATAGCTGAAATATTGTTCGCGGAAAGTCGCCATGCGTACATCGGAACATGCCTGCTGCAGGCCATTTACAGACCAATCGCGAACGCGCCACCGCAAACGACCAATATTCGCCCTATCGCGAGCAAATCTCCTACAATTGGCTTGTCGCGAGAGCAATAATTGGCATATATTGTTTCGAATCTGGAAGCTAGCAGCTGCTAAAAATTGTTTATTACACAGAAAAAACAATGAAAAGCGAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>234 207 126 113 108 78 28 27 25 22 16 6 6 2 2</canonical_bands>
                <polymorphic_bands>236 207 126 113 108 78 28 27 25 22 16 6 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTTTTTGTATGTTGTTTATTCA</pcr_primer_p1>
		<pcr_primer_p2>GGCAAAATATCAGGAAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCCTTTTTGTATGTTGTTTATTCAATAATCAGTTCTTGAAAATAATTCATGTTATTTTTGTATAATTCACACCTTTTTTTTGTACAAATGCATCCGAAAGAGATTAGCCGCTTCAAAGTTCGGTACTTGATTAGTTTTAAGCGGTATATCTCATTTGGATGAATTTTTACAAGAAAGTTGTCAACTATAAAATTGAAGGTTTCTTTGTTAAAGGAAGCCAGACATTTAAAAAAAAGTTTTCCTGATATTTTGCC</canonical_amplicon>
		<polymorphic_amplicon>TCCTTTTTGTATGTTGTTTATTCAATAATCAGTTCTTGAAAATAATTCATGTTATTTTTGTATAATTCACAMCTTTTTTTTGTACAAATGCATCCGAAAGAGATTAGCCGCTTCAAAGTTCGGTACTTGATTAGTTTTAAGCGGTATATCTCATTTGGATGAATTTTTACAAGAAAGTTGTCAACTATAAAATTGAAGGTTTCTTTGTTAAAGGAAGCCAGACATTTAAAAAAAAGTTTTCCTGATATTTTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29686</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>325424</contig_pos>
        <strand>+</strand>
        <context>TTGTACAAAT[G/T]CATCCGAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATAATTCATGTTATTTTTGTATAATTCACACCTTTTTTTTGTACAAAT</left_flank>
        <right_flank>CATCCGAAAGAGATTAGCCGCTTCAAAGTTCGGTACTTGATTAGTTTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTCCAAGGGATAGGCAGAATTTTAAGAAACCATTTTTTGCATACTTGTAACGGGCCGGGATTTTTCCGGAATTTCGGAGGCCCGGCCCGGCCCGGCGGGCCCGTCATTTCACTAGTTTTGAAATTTTCAAAAAACACATCAGGGGGGACCCTTATGTGATTTTTTTCGACCAAAATTTTTTTTCGAGTTTTTTCGATATTTTTAGAGCAAACAGACAAACAATCCAAAATAACAAAAAAATGAAGAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACATAATTTTTGAGACCGGGCCTTCCGGGCCGGGCCCGGGCCTTGAGAATTTCCTCAGGCTTTTTTTGAAAATTAATAATGTGCTATCACCCTTCAACTCTGAAATGTTCCGTTTCACTACAATATTCCTTTTTGTATGTTGTTTATTCAATAATCAGTTCTTGAAAATAATTCATGTTATTTTTGTATAATTCACACCTTTTTTTTGTACAAATGCATCCGAAAGAGATTAGCCGCTTCAAAGTTCGGTACTTGATTAGTTTTAAGCGGTATATCTCATTTGGATGAATTTTTACAAGAAAGTTGTCAACTATAAAATTGAAGGTTTCTTTGTTAAAGGAAGCCAGACATTTAAAAAAAAGTTTTCCTGATATTTTGCCTAAAGAACCCCCATGAGGAGTTGAACTCATGCTGGTCAGCTCAGGGGTACACAGGTGATTCGCGCAGCGTCTATAATAGCTGAAATATTGTTCGCGGAAAGTCGCCATGCGTACATCGGAACATGCCTGCTGCAGGCCATTTACAGACCAATCGCGAACGCGCCACCGCAAACGACCAATATTCGCCCTATCGCGAGCAAATCTCCTACAATTGGCTTGTCGCGAGAGCAATAATTGGCATATATTGTTTCGAATCTGGAAGCTAGCAGCTGCTAAAAATTGTTTATTACACAGAAAAAACAATGAAAAGCGAAAAAAACAATTTATTAAGTTATA</canonical>
            <polymorphic>CCTTCCAAGGGATAGGCAGAATTTTAAGAAACCATTTTTTGCATACTTGTAACGGGCCGGGATTTTTCCGGAATTTCGGAGGCCCGGCCCGGCCCGGCGGGCCCGTCATTTCACTAGTTTTGAAATTTTCAAAAAACACATCAGGGGGGACCCTTATGTGATTTTTTTCGACCAAAATTTTTTTTCGAGTTTTTTCGATATTTTTAGAGCAAACAGACAAACAATCCAAAATAACAAAAAAATGAAGAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACATAATTTTTGAGACCGGGCCTTCCGGGCCGGGCCCGGGCCTTGAGAATTTCCTCAGGCTTTTTTTGAAAATTAATAATGTGCTATCACCCTTCAACTCTGAAATGTTCCGTTTCACTACAATATTCCTTTTTGTATGTTGTTTATTCAATAATCAGTTCTTGAAAATAATTCATGTTATTTTTGTATAATTCACACCTTTTTTTTGTACAAATKCATCCGAAAGAGATTAGCCGCTTCAAAGTTCGGTACTTGATTAGTTTTAAGCGGTATATCTCATTTGGATGAATTTTTACAAGAAAGTTGTCAACTATAAAATTGAAGGTTTCTTTGTTAAAGGAAGCCAGACATTTAAAAAAAAGTTTTCCTGATATTTTGCCTAAAGAACCCCCATGAGGAGTTGAACTCATGCTGGTCAGCTCAGGGGTACACAGGTGATTCGCGCAGCGTCTATAATAGCTGAAATATTGTTCGCGGAAAGTCGCCATGCGTACATCGGAACATGCCTGCTGCAGGCCATTTACAGACCAATCGCGAACGCGCCACCGCAAACGACCAATATTCGCCCTATCGCGAGCAAATCTCCTACAATTGGCTTGTCGCGAGAGCAATAATTGGCATATATTGTTTCGAATCTGGAAGCTAGCAGCTGCTAAAAATTGTTTATTACACAGAAAAAACAATGAAAAGCGAAAAAAACAATTTATTAAGTTATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATGCAT</site>
                <isoschizomers>
                    <enzyme>BfrBI</enzyme>
                    <enzyme>EcoT22I</enzyme>
                    <enzyme>Mph1103I</enzyme>
                    <enzyme>NsiI</enzyme>
                    <enzyme>Ppu10I</enzyme>
                    <enzyme>Zsp2I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>459 296 204 41</canonical_bands>
                <polymorphic_bands>755 204 41</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTTTTTGTATGTTGTTTATTCA</pcr_primer_p1>
		<pcr_primer_p2>GGCAAAATATCAGGAAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCCTTTTTGTATGTTGTTTATTCAATAATCAGTTCTTGAAAATAATTCATGTTATTTTTGTATAATTCACACCTTTTTTTTGTACAAATGCATCCGAAAGAGATTAGCCGCTTCAAAGTTCGGTACTTGATTAGTTTTAAGCGGTATATCTCATTTGGATGAATTTTTACAAGAAAGTTGTCAACTATAAAATTGAAGGTTTCTTTGTTAAAGGAAGCCAGACATTTAAAAAAAAGTTTTCCTGATATTTTGCC</canonical_amplicon>
		<polymorphic_amplicon>TCCTTTTTGTATGTTGTTTATTCAATAATCAGTTCTTGAAAATAATTCATGTTATTTTTGTATAATTCACACCTTTTTTTTGTACAAATKCATCCGAAAGAGATTAGCCGCTTCAAAGTTCGGTACTTGATTAGTTTTAAGCGGTATATCTCATTTGGATGAATTTTTACAAGAAAGTTGTCAACTATAAAATTGAAGGTTTCTTTGTTAAAGGAAGCCAGACATTTAAAAAAAAGTTTTCCTGATATTTTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29687</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>325561</contig_pos>
        <strand>+</strand>
        <context>GCCAGACATT[A/T]AAAAAAAAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTGTCAACTATAAAATTGAAGGTTTCTTTGTTAAAGGAAGCCAGACATT</left_flank>
        <right_flank>AAAAAAAAGTTTTCCTGATATTTTGCCTAAAGAACCCCCATGAGGAGTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATCAGGGGGGACCCTTATGTGATTTTTTTCGACCAAAATTTTTTTTCGAGTTTTTTCGATATTTTTAGAGCAAACAGACAAACAATCCAAAATAACAAAAAAATGAAGAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACATAATTTTTGAGACCGGGCCTTCCGGGCCGGGCCCGGGCCTTGAGAATTTCCTCAGGCTTTTTTTGAAAATTAATAATGTGCTATCACCCTTCAACTCTGAAATGTTCCGTTTCACTACAATATTCCTTTTTGTATGTTGTTTATTCAATAATCAGTTCTTGAAAATAATTCATGTTATTTTTGTATAATTCACACCTTTTTTTTGTACAAATGCATCCGAAAGAGATTAGCCGCTTCAAAGTTCGGTACTTGATTAGTTTTAAGCGGTATATCTCATTTGGATGAATTTTTACAAGAAAGTTGTCAACTATAAAATTGAAGGTTTCTTTGTTAAAGGAAGCCAGACATTTAAAAAAAAGTTTTCCTGATATTTTGCCTAAAGAACCCCCATGAGGAGTTGAACTCATGCTGGTCAGCTCAGGGGTACACAGGTGATTCGCGCAGCGTCTATAATAGCTGAAATATTGTTCGCGGAAAGTCGCCATGCGTACATCGGAACATGCCTGCTGCAGGCCATTTACAGACCAATCGCGAACGCGCCACCGCAAACGACCAATATTCGCCCTATCGCGAGCAAATCTCCTACAATTGGCTTGTCGCGAGAGCAATAATTGGCATATATTGTTTCGAATCTGGAAGCTAGCAGCTGCTAAAAATTGTTTATTACACAGAAAAAACAATGAAAAGCGAAAAAAACAATTTATTAAGTTATATTATTCTCTTCCGCTGTTGTCGAACTGGCTGAAACGGCATCGGAGCTTCTCGTTTTGTCCATTTTTGCCTCAGTCGATGACGATGAGCAGAAGATGATGTTGATTGTTGTTTCGAAGTAACTGAACCTCTGACACAA</canonical>
            <polymorphic>ACATCAGGGGGGACCCTTATGTGATTTTTTTCGACCAAAATTTTTTTTCGAGTTTTTTCGATATTTTTAGAGCAAACAGACAAACAATCCAAAATAACAAAAAAATGAAGAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACATAATTTTTGAGACCGGGCCTTCCGGGCCGGGCCCGGGCCTTGAGAATTTCCTCAGGCTTTTTTTGAAAATTAATAATGTGCTATCACCCTTCAACTCTGAAATGTTCCGTTTCACTACAATATTCCTTTTTGTATGTTGTTTATTCAATAATCAGTTCTTGAAAATAATTCATGTTATTTTTGTATAATTCACACCTTTTTTTTGTACAAATGCATCCGAAAGAGATTAGCCGCTTCAAAGTTCGGTACTTGATTAGTTTTAAGCGGTATATCTCATTTGGATGAATTTTTACAAGAAAGTTGTCAACTATAAAATTGAAGGTTTCTTTGTTAAAGGAAGCCAGACATTWAAAAAAAAGTTTTCCTGATATTTTGCCTAAAGAACCCCCATGAGGAGTTGAACTCATGCTGGTCAGCTCAGGGGTACACAGGTGATTCGCGCAGCGTCTATAATAGCTGAAATATTGTTCGCGGAAAGTCGCCATGCGTACATCGGAACATGCCTGCTGCAGGCCATTTACAGACCAATCGCGAACGCGCCACCGCAAACGACCAATATTCGCCCTATCGCGAGCAAATCTCCTACAATTGGCTTGTCGCGAGAGCAATAATTGGCATATATTGTTTCGAATCTGGAAGCTAGCAGCTGCTAAAAATTGTTTATTACACAGAAAAAACAATGAAAAGCGAAAAAAACAATTTATTAAGTTATATTATTCTCTTCCGCTGTTGTCGAACTGGCTGAAACGGCATCGGAGCTTCTCGTTTTGTCCATTTTTGCCTCAGTCGATGACGATGAGCAGAAGATGATGTTGATTGTTGTTTCGAAGTAACTGAACCTCTGACACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>355 220 190 146 71 18</canonical_bands>
                <polymorphic_bands>373 220 190 146 71</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAAAGTTCGGTACTTGATTAG</pcr_primer_p1>
		<pcr_primer_p2>AAGCCAATTGTAGGAGATTTG</pcr_primer_p2>
		<pcr_amplicon_size>361</pcr_amplicon_size>
		<canonical_amplicon>TTCAAAGTTCGGTACTTGATTAGTTTTAAGCGGTATATCTCATTTGGATGAATTTTTACAAGAAAGTTGTCAACTATAAAATTGAAGGTTTCTTTGTTAAAGGAAGCCAGACATTTAAAAAAAAGTTTTCCTGATATTTTGCCTAAAGAACCCCCATGAGGAGTTGAACTCATGCTGGTCAGCTCAGGGGTACACAGGTGATTCGCGCAGCGTCTATAATAGCTGAAATATTGTTCGCGGAAAGTCGCCATGCGTACATCGGAACATGCCTGCTGCAGGCCATTTACAGACCAATCGCGAACGCGCCACCGCAAACGACCAATATTCGCCCTATCGCGAGCAAATCTCCTACAATTGGCTT</canonical_amplicon>
		<polymorphic_amplicon>TTCAAAGTTCGGTACTTGATTAGTTTTAAGCGGTATATCTCATTTGGATGAATTTTTACAAGAAAGTTGTCAACTATAAAATTGAAGGTTTCTTTGTTAAAGGAAGCCAGACATTWAAAAAAAAGTTTTCCTGATATTTTGCCTAAAGAACCCCCATGAGGAGTTGAACTCATGCTGGTCAGCTCAGGGGTACACAGGTGATTCGCGCAGCGTCTATAATAGCTGAAATATTGTTCGCGGAAAGTCGCCATGCGTACATCGGAACATGCCTGCTGCAGGCCATTTACAGACCAATCGCGAACGCGCCACCGCAAACGACCAATATTCGCCCTATCGCGAGCAAATCTCCTACAATTGGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29688</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>325719</contig_pos>
        <strand>+</strand>
        <context>ACATGCCTGC[C/T]GCAGGCCATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAATATTGTTCGCGGAAAGTCGCCATGCGTACATCGGAACATGCCTGC</left_flank>
        <right_flank>GCAGGCCATTTACAGACCAATCGCGAACGCGCCACCGCAAACGACCAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGACCGGGCCTTCCGGGCCGGGCCCGGGCCTTGAGAATTTCCTCAGGCTTTTTTTGAAAATTAATAATGTGCTATCACCCTTCAACTCTGAAATGTTCCGTTTCACTACAATATTCCTTTTTGTATGTTGTTTATTCAATAATCAGTTCTTGAAAATAATTCATGTTATTTTTGTATAATTCACACCTTTTTTTTGTACAAATGCATCCGAAAGAGATTAGCCGCTTCAAAGTTCGGTACTTGATTAGTTTTAAGCGGTATATCTCATTTGGATGAATTTTTACAAGAAAGTTGTCAACTATAAAATTGAAGGTTTCTTTGTTAAAGGAAGCCAGACATTTAAAAAAAAGTTTTCCTGATATTTTGCCTAAAGAACCCCCATGAGGAGTTGAACTCATGCTGGTCAGCTCAGGGGTACACAGGTGATTCGCGCAGCGTCTATAATAGCTGAAATATTGTTCGCGGAAAGTCGCCATGCGTACATCGGAACATGCCTGCTGCAGGCCATTTACAGACCAATCGCGAACGCGCCACCGCAAACGACCAATATTCGCCCTATCGCGAGCAAATCTCCTACAATTGGCTTGTCGCGAGAGCAATAATTGGCATATATTGTTTCGAATCTGGAAGCTAGCAGCTGCTAAAAATTGTTTATTACACAGAAAAAACAATGAAAAGCGAAAAAAACAATTTATTAAGTTATATTATTCTCTTCCGCTGTTGTCGAACTGGCTGAAACGGCATCGGAGCTTCTCGTTTTGTCCATTTTTGCCTCAGTCGATGACGATGAGCAGAAGATGATGTTGATTGTTGTTTCGAAGTAACTGAACCTCTGACACAAGTTATCGACTGGACATTTTTTTCGAAATCCGCGAACTTAACACTTCCGTCTGAAATCAACTTTTTTCTCTGATATTCGTTTTCAAATTTACCCACTGTTCCAGAATTTTTTCCTTCCTCATTCTCAGTTGCATTTTTCCGGAGTGCCCAGTCGACATA</canonical>
            <polymorphic>GAGACCGGGCCTTCCGGGCCGGGCCCGGGCCTTGAGAATTTCCTCAGGCTTTTTTTGAAAATTAATAATGTGCTATCACCCTTCAACTCTGAAATGTTCCGTTTCACTACAATATTCCTTTTTGTATGTTGTTTATTCAATAATCAGTTCTTGAAAATAATTCATGTTATTTTTGTATAATTCACACCTTTTTTTTGTACAAATGCATCCGAAAGAGATTAGCCGCTTCAAAGTTCGGTACTTGATTAGTTTTAAGCGGTATATCTCATTTGGATGAATTTTTACAAGAAAGTTGTCAACTATAAAATTGAAGGTTTCTTTGTTAAAGGAAGCCAGACATTTAAAAAAAAGTTTTCCTGATATTTTGCCTAAAGAACCCCCATGAGGAGTTGAACTCATGCTGGTCAGCTCAGGGGTACACAGGTGATTCGCGCAGCGTCTATAATAGCTGAAATATTGTTCGCGGAAAGTCGCCATGCGTACATCGGAACATGCCTGCYGCAGGCCATTTACAGACCAATCGCGAACGCGCCACCGCAAACGACCAATATTCGCCCTATCGCGAGCAAATCTCCTACAATTGGCTTGTCGCGAGAGCAATAATTGGCATATATTGTTTCGAATCTGGAAGCTAGCAGCTGCTAAAAATTGTTTATTACACAGAAAAAACAATGAAAAGCGAAAAAAACAATTTATTAAGTTATATTATTCTCTTCCGCTGTTGTCGAACTGGCTGAAACGGCATCGGAGCTTCTCGTTTTGTCCATTTTTGCCTCAGTCGATGACGATGAGCAGAAGATGATGTTGATTGTTGTTTCGAAGTAACTGAACCTCTGACACAAGTTATCGACTGGACATTTTTTTCGAAATCCGCGAACTTAACACTTCCGTCTGAAATCAACTTTTTTCTCTGATATTCGTTTTCAAATTTACCCACTGTTCCAGAATTTTTTCCTTCCTCATTCTCAGTTGCATTTTTCCGGAGTGCCCAGTCGACATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTGCAG</site>
                <isoschizomers>
                    <enzyme>BloHII</enzyme>
                    <enzyme>BstMAI</enzyme>
                    <enzyme>PstI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>471 296 205 28</canonical_bands>
                <polymorphic_bands>767 205 28</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>433 365 137 65</canonical_bands>
                <polymorphic_bands>433 365 202</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCCTGATATTTTGCCTAA</pcr_primer_p1>
		<pcr_primer_p2>ACAAGCCAATTGTAGGAGATT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCCTGATATTTTGCCTAAAGAACCCCCATGAGGAGTTGAACTCATGCTGGTCAGCTCAGGGGTACACAGGTGATTCGCGCAGCGTCTATAATAGCTGAAATATTGTTCGCGGAAAGTCGCCATGCGTACATCGGAACATGCCTGCTGCAGGCCATTTACAGACCAATCGCGAACGCGCCACCGCAAACGACCAATATTCGCCCTATCGCGAGCAAATCTCCTACAATTGGCTTGT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCCTGATATTTTGCCTAAAGAACCCCCATGAGGAGTTGAACTCATGCTGGTCAGCTCAGGGGTACACAGGTGATTCGCGCAGCGTCTATAATAGCTGAAATATTGTTCGCGGAAAGTCGCCATGCGTACATCGGAACATGCCTGCYGCAGGCCATTTACAGACCAATCGCGAACGCGCCACCGCAAACGACCAATATTCGCCCTATCGCGAGCAAATCTCCTACAATTGGCTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29689</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>329034</contig_pos>
        <strand>+</strand>
        <context>TTCATATAAT[C/G]AAAATCCTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATGTTCAGTATTTTGCATCAAAGTTCAATTCCTCGAAAGGTTCATATAAT</left_flank>
        <right_flank>AAAATCCTTTTTGAAAGTCTATAGATTTCCAAAACAACTCTTCTCTATTA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGCGTGCTACATAATACAGTTTAGTATATCGTTTTATCTTTAATCTGTATAAAGTTATGCTTTTTTGAATGAACTTGATCCACTTTTTCGGAAAAAACACAAAAAGTTTTGCCATTCTGCTCAACCTGCCTATGGGCACCTTATATTATTTGTTTTGTGCTAGTCCAGCGACGGGACTTTTTTTGCCACCAACATCTAAGAAAAAGCGAAATTTCACTTCGGATACTTCCCCTGTAAGAAGAAAAGATCGCTGTAATTAAATGTTCTATGAACTAGTGGATATCAAAAGTTCTCCTATCTTCAGCTGTTTCTGAAATTTCAGATGATGTGAACATGCTATTTTCTTTAATGGGTCTTCCTTTTGAAATGCATAATCGAAGGTTTTATTGAAGCAATAGTATGCATTTCTGACCGGCGTCTGTGTAGCTCAGCTGGTTGTAGCGCGGCATGTTCAGTATTTTGCATCAAAGTTCAATTCCTCGAAAGGTTCATATAATCAAAATCCTTTTTGAAAGTCTATAGATTTCCAAAACAACTCTTCTCTATTATTTTTCCCATGTTTCTTTCTTTTTTCTTTCATCTCCCCCACCCCCATTCTTTTCATTCACTCCTCGGGATATGTTTGCTCTTCCTTTCAACCATGACTCATTCAATTTTTTTTCTTTCTAACTTTTTTCTGACACCTATAGTCACGTCGTGTGTCCTTTTTTCTCATACAGAAAACACAAAAATCATCATTTTTCCTATTTTTTCGTGGGCGGATGATTCGGAATTCCTGAAATTTGTGGTTCCTGGGTCATTTTTTTTTGGAAAATACGTAATATTTTTCTCCATTTTACGTAGGAGAGATGACGTGAATTCGTGTTAGCTAAGAGTTCCTTATCAGTGTTAAGACCTTATCAGTTTTTAAAAGAATCTTTAGGCAGAAATTTATGTTATTTAAACTATTTAAGCTATTCCATTTTTTCAGTTTCTTGAAAATTAGTTTTTTGATTTTT</canonical>
            <polymorphic>AATGCGTGCTACATAATACAGTTTAGTATATCGTTTTATCTTTAATCTGTATAAAGTTATGCTTTTTTGAATGAACTTGATCCACTTTTTCGGAAAAAACACAAAAAGTTTTGCCATTCTGCTCAACCTGCCTATGGGCACCTTATATTATTTGTTTTGTGCTAGTCCAGCGACGGGACTTTTTTTGCCACCAACATCTAAGAAAAAGCGAAATTTCACTTCGGATACTTCCCCTGTAAGAAGAAAAGATCGCTGTAATTAAATGTTCTATGAACTAGTGGATATCAAAAGTTCTCCTATCTTCAGCTGTTTCTGAAATTTCAGATGATGTGAACATGCTATTTTCTTTAATGGGTCTTCCTTTTGAAATGCATAATCGAAGGTTTTATTGAAGCAATAGTATGCATTTCTGACCGGCGTCTGTGTAGCTCAGCTGGTTGTAGCGCGGCATGTTCAGTATTTTGCATCAAAGTTCAATTCCTCGAAAGGTTCATATAATSAAAATCCTTTTTGAAAGTCTATAGATTTCCAAAACAACTCTTCTCTATTATTTTTCCCATGTTTCTTTCTTTTTTCTTTCATCTCCCCCACCCCCATTCTTTTCATTCACTCCTCGGGATATGTTTGCTCTTCCTTTCAACCATGACTCATTCAATTTTTTTTCTTTCTAACTTTTTTCTGACACCTATAGTCACGTCGTGTGTCCTTTTTTCTCATACAGAAAACACAAAAATCATCATTTTTCCTATTTTTTCGTGGGCGGATGATTCGGAATTCCTGAAATTTGTGGTTCCTGGGTCATTTTTTTTTGGAAAATACGTAATATTTTTCTCCATTTTACGTAGGAGAGATGACGTGAATTCGTGTTAGCTAAGAGTTCCTTATCAGTGTTAAGACCTTATCAGTTTTTAAAAGAATCTTTAGGCAGAAATTTATGTTATTTAAACTATTTAAGCTATTCCATTTTTTCAGTTTCTTGAAAATTAGTTTTTTGATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGATGATGTGAACATGCTATT</pcr_primer_p1>
		<pcr_primer_p2>GAAAGAAACATGGGAAAAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGATGATGTGAACATGCTATTTTCTTTAATGGGTCTTCCTTTTGAAATGCATAATCGAAGGTTTTATTGAAGCAATAGTATGCATTTCTGACCGGCGTCTGTGTAGCTCAGCTGGTTGTAGCGCGGCATGTTCAGTATTTTGCATCAAAGTTCAATTCCTCGAAAGGTTCATATAATCAAAATCCTTTTTGAAAGTCTATAGATTTCCAAAACAACTCTTCTCTATTATTTTTCCCATGTTTCTTTC</canonical_amplicon>
		<polymorphic_amplicon>CAGATGATGTGAACATGCTATTTTCTTTAATGGGTCTTCCTTTTGAAATGCATAATCGAAGGTTTTATTGAAGCAATAGTATGCATTTCTGACCGGCGTCTGTGTAGCTCAGCTGGTTGTAGCGCGGCATGTTCAGTATTTTGCATCAAAGTTCAATTCCTCGAAAGGTTCATATAATSAAAATCCTTTTTGAAAGTCTATAGATTTCCAAAACAACTCTTCTCTATTATTTTTCCCATGTTTCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29690</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>329077</contig_pos>
        <strand>+</strand>
        <context>AACAACTCTT[C/T]TCTATTATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATATAATCAAAATCCTTTTTGAAAGTCTATAGATTTCCAAAACAACTCTT</left_flank>
        <right_flank>TCTATTATTTTTCCCATGTTTCTTTCTTTTTTCTTTCATCTCCCCCACCC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCTGTATAAAGTTATGCTTTTTTGAATGAACTTGATCCACTTTTTCGGAAAAAACACAAAAAGTTTTGCCATTCTGCTCAACCTGCCTATGGGCACCTTATATTATTTGTTTTGTGCTAGTCCAGCGACGGGACTTTTTTTGCCACCAACATCTAAGAAAAAGCGAAATTTCACTTCGGATACTTCCCCTGTAAGAAGAAAAGATCGCTGTAATTAAATGTTCTATGAACTAGTGGATATCAAAAGTTCTCCTATCTTCAGCTGTTTCTGAAATTTCAGATGATGTGAACATGCTATTTTCTTTAATGGGTCTTCCTTTTGAAATGCATAATCGAAGGTTTTATTGAAGCAATAGTATGCATTTCTGACCGGCGTCTGTGTAGCTCAGCTGGTTGTAGCGCGGCATGTTCAGTATTTTGCATCAAAGTTCAATTCCTCGAAAGGTTCATATAATCAAAATCCTTTTTGAAAGTCTATAGATTTCCAAAACAACTCTTCTCTATTATTTTTCCCATGTTTCTTTCTTTTTTCTTTCATCTCCCCCACCCCCATTCTTTTCATTCACTCCTCGGGATATGTTTGCTCTTCCTTTCAACCATGACTCATTCAATTTTTTTTCTTTCTAACTTTTTTCTGACACCTATAGTCACGTCGTGTGTCCTTTTTTCTCATACAGAAAACACAAAAATCATCATTTTTCCTATTTTTTCGTGGGCGGATGATTCGGAATTCCTGAAATTTGTGGTTCCTGGGTCATTTTTTTTTGGAAAATACGTAATATTTTTCTCCATTTTACGTAGGAGAGATGACGTGAATTCGTGTTAGCTAAGAGTTCCTTATCAGTGTTAAGACCTTATCAGTTTTTAAAAGAATCTTTAGGCAGAAATTTATGTTATTTAAACTATTTAAGCTATTCCATTTTTTCAGTTTCTTGAAAATTAGTTTTTTGATTTTTGAGATCTCCTGAAAATCTCAATTCTTATGTGTACTTCCTCCAT</canonical>
            <polymorphic>AATCTGTATAAAGTTATGCTTTTTTGAATGAACTTGATCCACTTTTTCGGAAAAAACACAAAAAGTTTTGCCATTCTGCTCAACCTGCCTATGGGCACCTTATATTATTTGTTTTGTGCTAGTCCAGCGACGGGACTTTTTTTGCCACCAACATCTAAGAAAAAGCGAAATTTCACTTCGGATACTTCCCCTGTAAGAAGAAAAGATCGCTGTAATTAAATGTTCTATGAACTAGTGGATATCAAAAGTTCTCCTATCTTCAGCTGTTTCTGAAATTTCAGATGATGTGAACATGCTATTTTCTTTAATGGGTCTTCCTTTTGAAATGCATAATCGAAGGTTTTATTGAAGCAATAGTATGCATTTCTGACCGGCGTCTGTGTAGCTCAGCTGGTTGTAGCGCGGCATGTTCAGTATTTTGCATCAAAGTTCAATTCCTCGAAAGGTTCATATAATCAAAATCCTTTTTGAAAGTCTATAGATTTCCAAAACAACTCTTYTCTATTATTTTTCCCATGTTTCTTTCTTTTTTCTTTCATCTCCCCCACCCCCATTCTTTTCATTCACTCCTCGGGATATGTTTGCTCTTCCTTTCAACCATGACTCATTCAATTTTTTTTCTTTCTAACTTTTTTCTGACACCTATAGTCACGTCGTGTGTCCTTTTTTCTCATACAGAAAACACAAAAATCATCATTTTTCCTATTTTTTCGTGGGCGGATGATTCGGAATTCCTGAAATTTGTGGTTCCTGGGTCATTTTTTTTTGGAAAATACGTAATATTTTTCTCCATTTTACGTAGGAGAGATGACGTGAATTCGTGTTAGCTAAGAGTTCCTTATCAGTGTTAAGACCTTATCAGTTTTTAAAAGAATCTTTAGGCAGAAATTTATGTTATTTAAACTATTTAAGCTATTCCATTTTTTCAGTTTCTTGAAAATTAGTTTTTTGATTTTTGAGATCTCCTGAAAATCTCAATTCTTATGTGTACTTCCTCCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCAATAGTATGCATTTCTGAC</pcr_primer_p1>
		<pcr_primer_p2>GTTGAAAGGAAGAGCAAACATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGCAATAGTATGCATTTCTGACCGGCGTCTGTGTAGCTCAGCTGGTTGTAGCGCGGCATGTTCAGTATTTTGCATCAAAGTTCAATTCCTCGAAAGGTTCATATAATCAAAATCCTTTTTGAAAGTCTATAGATTTCCAAAACAACTCTTCTCTATTATTTTTCCCATGTTTCTTTCTTTTTTCTTTCATCTCCCCCACCCCCATTCTTTTCATTCACTCCTCGGGATATGTTTGCTCTTCCTTTCAAC</canonical_amplicon>
		<polymorphic_amplicon>AAGCAATAGTATGCATTTCTGACCGGCGTCTGTGTAGCTCAGCTGGTTGTAGCGCGGCATGTTCAGTATTTTGCATCAAAGTTCAATTCCTCGAAAGGTTCATATAATCAAAATCCTTTTTGAAAGTCTATAGATTTCCAAAACAACTCTTYTCTATTATTTTTCCCATGTTTCTTTCTTTTTTCTTTCATCTCCCCCACCCCCATTCTTTTCATTCACTCCTCGGGATATGTTTGCTCTTCCTTTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29691</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>329190</contig_pos>
        <strand>+</strand>
        <context>ACTCATTCAA[G/T]TTTTTTTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCACTCCTCGGGATATGTTTGCTCTTCCTTTCAACCATGACTCATTCAA</left_flank>
        <right_flank>TTTTTTTCTTTCTAACTTTTTTCTGACACCTATAGTCACGTCGTGTGTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTGCTAGTCCAGCGACGGGACTTTTTTTGCCACCAACATCTAAGAAAAAGCGAAATTTCACTTCGGATACTTCCCCTGTAAGAAGAAAAGATCGCTGTAATTAAATGTTCTATGAACTAGTGGATATCAAAAGTTCTCCTATCTTCAGCTGTTTCTGAAATTTCAGATGATGTGAACATGCTATTTTCTTTAATGGGTCTTCCTTTTGAAATGCATAATCGAAGGTTTTATTGAAGCAATAGTATGCATTTCTGACCGGCGTCTGTGTAGCTCAGCTGGTTGTAGCGCGGCATGTTCAGTATTTTGCATCAAAGTTCAATTCCTCGAAAGGTTCATATAATCAAAATCCTTTTTGAAAGTCTATAGATTTCCAAAACAACTCTTCTCTATTATTTTTCCCATGTTTCTTTCTTTTTTCTTTCATCTCCCCCACCCCCATTCTTTTCATTCACTCCTCGGGATATGTTTGCTCTTCCTTTCAACCATGACTCATTCAATTTTTTTTCTTTCTAACTTTTTTCTGACACCTATAGTCACGTCGTGTGTCCTTTTTTCTCATACAGAAAACACAAAAATCATCATTTTTCCTATTTTTTCGTGGGCGGATGATTCGGAATTCCTGAAATTTGTGGTTCCTGGGTCATTTTTTTTTGGAAAATACGTAATATTTTTCTCCATTTTACGTAGGAGAGATGACGTGAATTCGTGTTAGCTAAGAGTTCCTTATCAGTGTTAAGACCTTATCAGTTTTTAAAAGAATCTTTAGGCAGAAATTTATGTTATTTAAACTATTTAAGCTATTCCATTTTTTCAGTTTCTTGAAAATTAGTTTTTTGATTTTTGAGATCTCCTGAAAATCTCAATTCTTATGTGTACTTCCTCCATTCGTACGAAATCATTATTTGAAGTTTGTAATAGTTTTTTAACAATAAGTTGAAACTGGAAAAAATCGAAAAATTTAGTTTTTGAAAATGTATCTTTTTTGGATTTCCAAACTT</canonical>
            <polymorphic>TTGTGCTAGTCCAGCGACGGGACTTTTTTTGCCACCAACATCTAAGAAAAAGCGAAATTTCACTTCGGATACTTCCCCTGTAAGAAGAAAAGATCGCTGTAATTAAATGTTCTATGAACTAGTGGATATCAAAAGTTCTCCTATCTTCAGCTGTTTCTGAAATTTCAGATGATGTGAACATGCTATTTTCTTTAATGGGTCTTCCTTTTGAAATGCATAATCGAAGGTTTTATTGAAGCAATAGTATGCATTTCTGACCGGCGTCTGTGTAGCTCAGCTGGTTGTAGCGCGGCATGTTCAGTATTTTGCATCAAAGTTCAATTCCTCGAAAGGTTCATATAATCAAAATCCTTTTTGAAAGTCTATAGATTTCCAAAACAACTCTTCTCTATTATTTTTCCCATGTTTCTTTCTTTTTTCTTTCATCTCCCCCACCCCCATTCTTTTCATTCACTCCTCGGGATATGTTTGCTCTTCCTTTCAACCATGACTCATTCAAKTTTTTTTCTTTCTAACTTTTTTCTGACACCTATAGTCACGTCGTGTGTCCTTTTTTCTCATACAGAAAACACAAAAATCATCATTTTTCCTATTTTTTCGTGGGCGGATGATTCGGAATTCCTGAAATTTGTGGTTCCTGGGTCATTTTTTTTTGGAAAATACGTAATATTTTTCTCCATTTTACGTAGGAGAGATGACGTGAATTCGTGTTAGCTAAGAGTTCCTTATCAGTGTTAAGACCTTATCAGTTTTTAAAAGAATCTTTAGGCAGAAATTTATGTTATTTAAACTATTTAAGCTATTCCATTTTTTCAGTTTCTTGAAAATTAGTTTTTTGATTTTTGAGATCTCCTGAAAATCTCAATTCTTATGTGTACTTCCTCCATTCGTACGAAATCATTATTTGAAGTTTGTAATAGTTTTTTAACAATAAGTTGAAACTGGAAAAAATCGAAAAATTTAGTTTTTGAAAATGTATCTTTTTTGGATTTCCAAACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>178 159 119 94 77 71 60 55 52 45 43 38 9</canonical_bands>
                <polymorphic_bands>297 159 94 77 71 60 55 52 45 43 38 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATTCTTTTCATTCACTCCT</pcr_primer_p1>
		<pcr_primer_p2>CCTACGTAAAATGGAGAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CCATTCTTTTCATTCACTCCTCGGGATATGTTTGCTCTTCCTTTCAACCATGACTCATTCAATTTTTTTTCTTTCTAACTTTTTTCTGACACCTATAGTCACGTCGTGTGTCCTTTTTTCTCATACAGAAAACACAAAAATCATCATTTTTCCTATTTTTTCGTGGGCGGATGATTCGGAATTCCTGAAATTTGTGGTTCCTGGGTCATTTTTTTTTGGAAAATACGTAATATTTTTCTCCATTTTACGTAGG</canonical_amplicon>
		<polymorphic_amplicon>CCATTCTTTTCATTCACTCCTCGGGATATGTTTGCTCTTCCTTTCAACCATGACTCATTCAAKTTTTTTTCTTTCTAACTTTTTTCTGACACCTATAGTCACGTCGTGTGTCCTTTTTTCTCATACAGAAAACACAAAAATCATCATTTTTCCTATTTTTTCGTGGGCGGATGATTCGGAATTCCTGAAATTTGTGGTTCCTGGGTCATTTTTTTTTGGAAAATACGTAATATTTTTCTCCATTTTACGTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29692</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>329230</contig_pos>
        <strand></strand>
        <context>CTATAGTCAC[G/T]TCGTGTGTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTCATTCAATTTTTTTTCTTTCTAACTTTTTTCTGACACCTATAGTCAC</left_flank>
        <right_flank>TCGTGTGTCCTTTTTTCTCATACAGAAAACACAAAAATCATCATTTTTCC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTAAGAAAAAGCGAAATTTCACTTCGGATACTTCCCCTGTAAGAAGAAAAGATCGCTGTAATTAAATGTTCTATGAACTAGTGGATATCAAAAGTTCTCCTATCTTCAGCTGTTTCTGAAATTTCAGATGATGTGAACATGCTATTTTCTTTAATGGGTCTTCCTTTTGAAATGCATAATCGAAGGTTTTATTGAAGCAATAGTATGCATTTCTGACCGGCGTCTGTGTAGCTCAGCTGGTTGTAGCGCGGCATGTTCAGTATTTTGCATCAAAGTTCAATTCCTCGAAAGGTTCATATAATCAAAATCCTTTTTGAAAGTCTATAGATTTCCAAAACAACTCTTCTCTATTATTTTTCCCATGTTTCTTTCTTTTTTCTTTCATCTCCCCCACCCCCATTCTTTTCATTCACTCCTCGGGATATGTTTGCTCTTCCTTTCAACCATGACTCATTCAATTTTTTTTCTTTCTAACTTTTTTCTGACACCTATAGTCACGTCGTGTGTCCTTTTTTCTCATACAGAAAACACAAAAATCATCATTTTTCCTATTTTTTCGTGGGCGGATGATTCGGAATTCCTGAAATTTGTGGTTCCTGGGTCATTTTTTTTTGGAAAATACGTAATATTTTTCTCCATTTTACGTAGGAGAGATGACGTGAATTCGTGTTAGCTAAGAGTTCCTTATCAGTGTTAAGACCTTATCAGTTTTTAAAAGAATCTTTAGGCAGAAATTTATGTTATTTAAACTATTTAAGCTATTCCATTTTTTCAGTTTCTTGAAAATTAGTTTTTTGATTTTTGAGATCTCCTGAAAATCTCAATTCTTATGTGTACTTCCTCCATTCGTACGAAATCATTATTTGAAGTTTGTAATAGTTTTTTAACAATAAGTTGAAACTGGAAAAAATCGAAAAATTTAGTTTTTGAAAATGTATCTTTTTTGGATTTCCAAACTTTTTCAGTTTCCTAAAATTCATTTAGCAGACAATTTTTTTA</canonical>
            <polymorphic>TCTAAGAAAAAGCGAAATTTCACTTCGGATACTTCCCCTGTAAGAAGAAAAGATCGCTGTAATTAAATGTTCTATGAACTAGTGGATATCAAAAGTTCTCCTATCTTCAGCTGTTTCTGAAATTTCAGATGATGTGAACATGCTATTTTCTTTAATGGGTCTTCCTTTTGAAATGCATAATCGAAGGTTTTATTGAAGCAATAGTATGCATTTCTGACCGGCGTCTGTGTAGCTCAGCTGGTTGTAGCGCGGCATGTTCAGTATTTTGCATCAAAGTTCAATTCCTCGAAAGGTTCATATAATCAAAATCCTTTTTGAAAGTCTATAGATTTCCAAAACAACTCTTCTCTATTATTTTTCCCATGTTTCTTTCTTTTTTCTTTCATCTCCCCCACCCCCATTCTTTTCATTCACTCCTCGGGATATGTTTGCTCTTCCTTTCAACCATGACTCATTCAATTTTTTTTCTTTCTAACTTTTTTCTGACACCTATAGTCACKTCGTGTGTCCTTTTTTCTCATACAGAAAACACAAAAATCATCATTTTTCCTATTTTTTCGTGGGCGGATGATTCGGAATTCCTGAAATTTGTGGTTCCTGGGTCATTTTTTTTTGGAAAATACGTAATATTTTTCTCCATTTTACGTAGGAGAGATGACGTGAATTCGTGTTAGCTAAGAGTTCCTTATCAGTGTTAAGACCTTATCAGTTTTTAAAAGAATCTTTAGGCAGAAATTTATGTTATTTAAACTATTTAAGCTATTCCATTTTTTCAGTTTCTTGAAAATTAGTTTTTTGATTTTTGAGATCTCCTGAAAATCTCAATTCTTATGTGTACTTCCTCCATTCGTACGAAATCATTATTTGAAGTTTGTAATAGTTTTTTAACAATAAGTTGAAACTGGAAAAAATCGAAAAATTTAGTTTTTGAAAATGTATCTTTTTTGGATTTCCAAACTTTTTCAGTTTCCTAAAATTCATTTAGCAGACAATTTTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>498 342 124 22 14</canonical_bands>
                <polymorphic_bands>622 342 22 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATGTTTGCTCTTCCTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>GAATTCACGTCATCTCTCCTAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATATGTTTGCTCTTCCTTTCAACCATGACTCATTCAATTTTTTTTCTTTCTAACTTTTTTCTGACACCTATAGTCACGTCGTGTGTCCTTTTTTCTCATACAGAAAACACAAAAATCATCATTTTTCCTATTTTTTCGTGGGCGGATGATTCGGAATTCCTGAAATTTGTGGTTCCTGGGTCATTTTTTTTTGGAAAATACGTAATATTTTTCTCCATTTTACGTAGGAGAGATGACGTGAATTC</canonical_amplicon>
		<polymorphic_amplicon>ATATGTTTGCTCTTCCTTTCAACCATGACTCATTCAATTTTTTTTCTTTCTAACTTTTTTCTGACACCTATAGTCACKTCGTGTGTCCTTTTTTCTCATACAGAAAACACAAAAATCATCATTTTTCCTATTTTTTCGTGGGCGGATGATTCGGAATTCCTGAAATTTGTGGTTCCTGGGTCATTTTTTTTTGGAAAATACGTAATATTTTTCTCCATTTTACGTAGGAGAGATGACGTGAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29693</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>329261</contig_pos>
        <strand>+</strand>
        <context>TACAGAAAAC[A/C]CAAAAATCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCTGACACCTATAGTCACGTCGTGTGTCCTTTTTTCTCATACAGAAAAC</left_flank>
        <right_flank>CAAAAATCATCATTTTTCCTATTTTTTCGTGGGCGGATGATTCGGAATTC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCCCCTGTAAGAAGAAAAGATCGCTGTAATTAAATGTTCTATGAACTAGTGGATATCAAAAGTTCTCCTATCTTCAGCTGTTTCTGAAATTTCAGATGATGTGAACATGCTATTTTCTTTAATGGGTCTTCCTTTTGAAATGCATAATCGAAGGTTTTATTGAAGCAATAGTATGCATTTCTGACCGGCGTCTGTGTAGCTCAGCTGGTTGTAGCGCGGCATGTTCAGTATTTTGCATCAAAGTTCAATTCCTCGAAAGGTTCATATAATCAAAATCCTTTTTGAAAGTCTATAGATTTCCAAAACAACTCTTCTCTATTATTTTTCCCATGTTTCTTTCTTTTTTCTTTCATCTCCCCCACCCCCATTCTTTTCATTCACTCCTCGGGATATGTTTGCTCTTCCTTTCAACCATGACTCATTCAATTTTTTTTCTTTCTAACTTTTTTCTGACACCTATAGTCACGTCGTGTGTCCTTTTTTCTCATACAGAAAACACAAAAATCATCATTTTTCCTATTTTTTCGTGGGCGGATGATTCGGAATTCCTGAAATTTGTGGTTCCTGGGTCATTTTTTTTTGGAAAATACGTAATATTTTTCTCCATTTTACGTAGGAGAGATGACGTGAATTCGTGTTAGCTAAGAGTTCCTTATCAGTGTTAAGACCTTATCAGTTTTTAAAAGAATCTTTAGGCAGAAATTTATGTTATTTAAACTATTTAAGCTATTCCATTTTTTCAGTTTCTTGAAAATTAGTTTTTTGATTTTTGAGATCTCCTGAAAATCTCAATTCTTATGTGTACTTCCTCCATTCGTACGAAATCATTATTTGAAGTTTGTAATAGTTTTTTAACAATAAGTTGAAACTGGAAAAAATCGAAAAATTTAGTTTTTGAAAATGTATCTTTTTTGGATTTCCAAACTTTTTCAGTTTCCTAAAATTCATTTAGCAGACAATTTTTTTAACATATCAACTTTGACACAATTTATCTGAAC</canonical>
            <polymorphic>CTTCCCCTGTAAGAAGAAAAGATCGCTGTAATTAAATGTTCTATGAACTAGTGGATATCAAAAGTTCTCCTATCTTCAGCTGTTTCTGAAATTTCAGATGATGTGAACATGCTATTTTCTTTAATGGGTCTTCCTTTTGAAATGCATAATCGAAGGTTTTATTGAAGCAATAGTATGCATTTCTGACCGGCGTCTGTGTAGCTCAGCTGGTTGTAGCGCGGCATGTTCAGTATTTTGCATCAAAGTTCAATTCCTCGAAAGGTTCATATAATCAAAATCCTTTTTGAAAGTCTATAGATTTCCAAAACAACTCTTCTCTATTATTTTTCCCATGTTTCTTTCTTTTTTCTTTCATCTCCCCCACCCCCATTCTTTTCATTCACTCCTCGGGATATGTTTGCTCTTCCTTTCAACCATGACTCATTCAATTTTTTTTCTTTCTAACTTTTTTCTGACACCTATAGTCACGTCGTGTGTCCTTTTTTCTCATACAGAAAACMCAAAAATCATCATTTTTCCTATTTTTTCGTGGGCGGATGATTCGGAATTCCTGAAATTTGTGGTTCCTGGGTCATTTTTTTTTGGAAAATACGTAATATTTTTCTCCATTTTACGTAGGAGAGATGACGTGAATTCGTGTTAGCTAAGAGTTCCTTATCAGTGTTAAGACCTTATCAGTTTTTAAAAGAATCTTTAGGCAGAAATTTATGTTATTTAAACTATTTAAGCTATTCCATTTTTTCAGTTTCTTGAAAATTAGTTTTTTGATTTTTGAGATCTCCTGAAAATCTCAATTCTTATGTGTACTTCCTCCATTCGTACGAAATCATTATTTGAAGTTTGTAATAGTTTTTTAACAATAAGTTGAAACTGGAAAAAATCGAAAAATTTAGTTTTTGAAAATGTATCTTTTTTGGATTTCCAAACTTTTTCAGTTTCCTAAAATTCATTTAGCAGACAATTTTTTTAACATATCAACTTTGACACAATTTATCTGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>182 165 141 93 75 69 53 52 31 31 24 24 19 14 10 8 7 2</canonical_bands>
                <polymorphic_bands>182 165 141 93 75 69 55 53 52 31 24 19 14 10 8 7 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATGTTTGCTCTTCCTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>GAATTCACGTCATCTCTCCTAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATATGTTTGCTCTTCCTTTCAACCATGACTCATTCAATTTTTTTTCTTTCTAACTTTTTTCTGACACCTATAGTCACGTCGTGTGTCCTTTTTTCTCATACAGAAAACACAAAAATCATCATTTTTCCTATTTTTTCGTGGGCGGATGATTCGGAATTCCTGAAATTTGTGGTTCCTGGGTCATTTTTTTTTGGAAAATACGTAATATTTTTCTCCATTTTACGTAGGAGAGATGACGTGAATTC</canonical_amplicon>
		<polymorphic_amplicon>ATATGTTTGCTCTTCCTTTCAACCATGACTCATTCAATTTTTTTTCTTTCTAACTTTTTTCTGACACCTATAGTCACGTCGTGTGTCCTTTTTTCTCATACAGAAAACMCAAAAATCATCATTTTTCCTATTTTTTCGTGGGCGGATGATTCGGAATTCCTGAAATTTGTGGTTCCTGGGTCATTTTTTTTTGGAAAATACGTAATATTTTTCTCCATTTTACGTAGGAGAGATGACGTGAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29694</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>357672</contig_pos>
        <strand>+</strand>
        <context>AGACGTGGAA[A/T]ATATGTGTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCATTTTGAAGTTATCAGTTTAGAGTCACTGGATCCAGAAGACGTGGAA</left_flank>
        <right_flank>ATATGTGTCAGGTAATTGAGATTTTCGAGAGTCTCGAAAATTCTAGAATC</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAATATGGAATTGGGAACCCCCCGGTTACTGTAGATACAGTGGAATTCAATCAACTGGCTGCTGCTGACTTTGTTTTCATTCTCAAGGGACCAAATCTTAGACTGCAACTAATGGAGTTTGATATTGAGCCGTTTGACAAGTTACCCACCTTCGAATGCTTTATTGAAAATTTCCTAAACCAGGAACTCAGAAAACAACAAGTCCACGTGGCAAAACTGGCTTATAAATTCAGCAGCTCGGCTCCTGATATCACTTACAGAACAATTCAACAGTACTTGGCGCCAAAAGTTTTGACATATTTGAAATTTTCCGTATGGAAGGATCCAGATGAAAGCGTCGAGTCGCCGAGAATCGACTATTCTGATTTTGTTGAATTTGTTCAGTGGAAACAAGCGACTCATTTGGAAATTCAAGAAACGAATTTAGGGCTCGACTGGCAACATTTTTATCATTTTGAAGTTATCAGTTTAGAGTCACTGGATCCAGAAGACGTGGAAAATATGTGTCAGGTAATTGAGATTTTCGAGAGTCTCGAAAATTCTAGAATCAAAGTTCCAGACATTCAAAGAAGCTCGCTATCAACCAACAAAAGGGATCACTATAAATGTTGAGAGGAAACTCGATTTCGAAGGAATCAAATCCAAATTAGAAGGGATTGGAAACATCGATGATTCGGAAAAATCGATCGAATTTCTGTCGGGTGATAAGAAGATGATTGTGAAGTTTGAGGATTTTTATATTATGGTTAACGTATTGGAGACTTAAGCTTGTTTTATTTATATTTTAGGTTCGAAGTGTTTTGTTCATTTTTATCTTTATCCAACCGAATTTTGGCTCTGCTCATTCGCATTTTTAATTATGCTTTTTTTCAAACAAAGTGTTATTTTTATGATTACCAGAAGTAATTGTTTCTTACTGTTATCTGAAAAACAATTCAGAATGGTAAATTTGTGTGATTAGCTGATACAAACCATGACATATGTATTGGGAGTTAGGTC</canonical>
            <polymorphic>TGAATATGGAATTGGGAACCCCCCGGTTACTGTAGATACAGTGGAATTCAATCAACTGGCTGCTGCTGACTTTGTTTTCATTCTCAAGGGACCAAATCTTAGACTGCAACTAATGGAGTTTGATATTGAGCCGTTTGACAAGTTACCCACCTTCGAATGCTTTATTGAAAATTTCCTAAACCAGGAACTCAGAAAACAACAAGTCCACGTGGCAAAACTGGCTTATAAATTCAGCAGCTCGGCTCCTGATATCACTTACAGAACAATTCAACAGTACTTGGCGCCAAAAGTTTTGACATATTTGAAATTTTCCGTATGGAAGGATCCAGATGAAAGCGTCGAGTCGCCGAGAATCGACTATTCTGATTTTGTTGAATTTGTTCAGTGGAAACAAGCGACTCATTTGGAAATTCAAGAAACGAATTTAGGGCTCGACTGGCAACATTTTTATCATTTTGAAGTTATCAGTTTAGAGTCACTGGATCCAGAAGACGTGGAAWATATGTGTCAGGTAATTGAGATTTTCGAGAGTCTCGAAAATTCTAGAATCAAAGTTCCAGACATTCAAAGAAGCTCGCTATCAACCAACAAAAGGGATCACTATAAATGTTGAGAGGAAACTCGATTTCGAAGGAATCAAATCCAAATTAGAAGGGATTGGAAACATCGATGATTCGGAAAAATCGATCGAATTTCTGTCGGGTGATAAGAAGATGATTGTGAAGTTTGAGGATTTTTATATTATGGTTAACGTATTGGAGACTTAAGCTTGTTTTATTTATATTTTAGGTTCGAAGTGTTTTGTTCATTTTTATCTTTATCCAACCGAATTTTGGCTCTGCTCATTCGCATTTTTAATTATGCTTTTTTTCAAACAAAGTGTTATTTTTATGATTACCAGAAGTAATTGTTTCTTACTGTTATCTGAAAAACAATTCAGAATGGTAAATTTGTGTGATTAGCTGATACAAACCATGACATATGTATTGGGAGTTAGGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGATTTTGTTGAATTTGTT</pcr_primer_p1>
		<pcr_primer_p2>CATTTATAGTGATCCCTTTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGATTTTGTTGAATTTGTTCAGTGGAAACAAGCGACTCATTTGGAAATTCAAGAAACGAATTTAGGGCTCGACTGGCAACATTTTTATCATTTTGAAGTTATCAGTTTAGAGTCACTGGATCCAGAAGACGTGGAAAATATGTGTCAGGTAATTGAGATTTTCGAGAGTCTCGAAAATTCTAGAATCAAAGTTCCAGACATTCAAAGAAGCTCGCTATCAACCAACAAAAGGGATCACTATAAATG</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGATTTTGTTGAATTTGTTCAGTGGAAACAAGCGACTCATTTGGAAATTCAAGAAACGAATTTAGGGCTCGACTGGCAACATTTTTATCATTTTGAAGTTATCAGTTTAGAGTCACTGGATCCAGAAGACGTGGAAWATATGTGTCAGGTAATTGAGATTTTCGAGAGTCTCGAAAATTCTAGAATCAAAGTTCCAGACATTCAAAGAAGCTCGCTATCAACCAACAAAAGGGATCACTATAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29695</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>358128</contig_pos>
        <strand>+</strand>
        <context>TAAATTTGTG[G/T]GATTAGCTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTGTTTCTTACTGTTATCTGAAAAACAATTCAGAATGGTAAATTTGTG</left_flank>
        <right_flank>GATTAGCTGATACAAACCATGACATATGTATTGGGAGTTAGGTCCGGTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAGTTATCAGTTTAGAGTCACTGGATCCAGAAGACGTGGAAAATATGTGTCAGGTAATTGAGATTTTCGAGAGTCTCGAAAATTCTAGAATCAAAGTTCCAGACATTCAAAGAAGCTCGCTATCAACCAACAAAAGGGATCACTATAAATGTTGAGAGGAAACTCGATTTCGAAGGAATCAAATCCAAATTAGAAGGGATTGGAAACATCGATGATTCGGAAAAATCGATCGAATTTCTGTCGGGTGATAAGAAGATGATTGTGAAGTTTGAGGATTTTTATATTATGGTTAACGTATTGGAGACTTAAGCTTGTTTTATTTATATTTTAGGTTCGAAGTGTTTTGTTCATTTTTATCTTTATCCAACCGAATTTTGGCTCTGCTCATTCGCATTTTTAATTATGCTTTTTTTCAAACAAAGTGTTATTTTTATGATTACCAGAAGTAATTGTTTCTTACTGTTATCTGAAAAACAATTCAGAATGGTAAATTTGTGTGATTAGCTGATACAAACCATGACATATGTATTGGGAGTTAGGTCCGGTTCACATGTCAAACTCATCAAAAAACATCTGCCTTTTTGAGGGAACCAATTAAATGTAAAGGCATTCTTTCGAAGAAATCCTTTGGGAAGTTTTTTTAGAGTGATGGTCCCGTGCAGATATGGTTCACATGACAAAAACACTTTTGCCTTCTAAAGAGGACCAATAATGCGGAAAGGCGATTTTGGTTAGATAAAATAATTTTATTCCTGTGAGCAAATATAAAATATCTCCCGAAAACACTCGGAAGTCACGGAAAATGATTTCATTGAATGATTAAAATCCAAGCAAAACTTGTTTCAAACAATATTGAACCTTAATTACAGTATACCGAAAATTTTGATCTACCAACTTTCCAACCCCGCGAATTTTTACAACGATTTTCAAAACTTGTTTTTGTTTTCTATTTTCTGGATTGTTTTCGATGTACAGTTGATTTCTTTGAAAATTTCAAG</canonical>
            <polymorphic>TGAAGTTATCAGTTTAGAGTCACTGGATCCAGAAGACGTGGAAAATATGTGTCAGGTAATTGAGATTTTCGAGAGTCTCGAAAATTCTAGAATCAAAGTTCCAGACATTCAAAGAAGCTCGCTATCAACCAACAAAAGGGATCACTATAAATGTTGAGAGGAAACTCGATTTCGAAGGAATCAAATCCAAATTAGAAGGGATTGGAAACATCGATGATTCGGAAAAATCGATCGAATTTCTGTCGGGTGATAAGAAGATGATTGTGAAGTTTGAGGATTTTTATATTATGGTTAACGTATTGGAGACTTAAGCTTGTTTTATTTATATTTTAGGTTCGAAGTGTTTTGTTCATTTTTATCTTTATCCAACCGAATTTTGGCTCTGCTCATTCGCATTTTTAATTATGCTTTTTTTCAAACAAAGTGTTATTTTTATGATTACCAGAAGTAATTGTTTCTTACTGTTATCTGAAAAACAATTCAGAATGGTAAATTTGTGKGATTAGCTGATACAAACCATGACATATGTATTGGGAGTTAGGTCCGGTTCACATGTCAAACTCATCAAAAAACATCTGCCTTTTTGAGGGAACCAATTAAATGTAAAGGCATTCTTTCGAAGAAATCCTTTGGGAAGTTTTTTTAGAGTGATGGTCCCGTGCAGATATGGTTCACATGACAAAAACACTTTTGCCTTCTAAAGAGGACCAATAATGCGGAAAGGCGATTTTGGTTAGATAAAATAATTTTATTCCTGTGAGCAAATATAAAATATCTCCCGAAAACACTCGGAAGTCACGGAAAATGATTTCATTGAATGATTAAAATCCAAGCAAAACTTGTTTCAAACAATATTGAACCTTAATTACAGTATACCGAAAATTTTGATCTACCAACTTTCCAACCCCGCGAATTTTTACAACGATTTTCAAAACTTGTTTTTGTTTTCTATTTTCTGGATTGTTTTCGATGTACAGTTGATTTCTTTGAAAATTTCAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>202 105 99 93 83 77 73 72 50 28 22 18 17 13 13 11 11 11 2</canonical_bands>
                <polymorphic_bands>202 105 99 93 83 77 73 72 52 28 22 18 17 13 13 11 11 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATCTTTATCCAACCGAATTTT</pcr_primer_p1>
		<pcr_primer_p2>TACATTTAATTGGTTCCCTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTATCTTTATCCAACCGAATTTTGGCTCTGCTCATTCGCATTTTTAATTATGCTTTTTTTCAAACAAAGTGTTATTTTTATGATTACCAGAAGTAATTGTTTCTTACTGTTATCTGAAAAACAATTCAGAATGGTAAATTTGTGTGATTAGCTGATACAAACCATGACATATGTATTGGGAGTTAGGTCCGGTTCACATGTCAAACTCATCAAAAAACATCTGCCTTTTTGAGGGAACCAATTAAATGTA</canonical_amplicon>
		<polymorphic_amplicon>TTATCTTTATCCAACCGAATTTTGGCTCTGCTCATTCGCATTTTTAATTATGCTTTTTTTCAAACAAAGTGTTATTTTTATGATTACCAGAAGTAATTGTTTCTTACTGTTATCTGAAAAACAATTCAGAATGGTAAATTTGTGKGATTAGCTGATACAAACCATGACATATGTATTGGGAGTTAGGTCCGGTTCACATGTCAAACTCATCAAAAAACATCTGCCTTTTTGAGGGAACCAATTAAATGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29696</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>359863</contig_pos>
        <strand>+</strand>
        <context>TTGGAGTGTG[A/G]AYATCTGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATGAAGACCCAATCCAAGTAGATCCCTTAATAAATATGTTGGAGTGTG</left_flank>
        <right_flank>ATATCTGAAGACAATTAAACTTCGTGTTTGGGATGATTCTGAGGTTTATC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCCCCGATGTTGCGCGTCTGCTGAAAAATTTGCCATAAAAAGCATTACAAGGCTGAAAATTGTGATTTTCTTGGACAAAGTTGAAATCAAAATTCAAGATGACGATAGAAAAATGTTGATCGAGTACAGAAGAAACGAACGCGGGAAAGAAGAAGTGAAGAAAAGGAGAATAGGTGAAGAACAGATAATTGAATACGACACTCCTAGCTACAAGATTCTGGCGGCTTGTGATTTCTATTTTCTCCTGAGAATGCCGTTGTTAAAACTGGAAAGACTTGGAATCAAAATGTATGACATGCCAACCCCCACTTTGCCTCGAAGACATCGTCGATATGTTGATATTTCTCTGTTAAGAATTATCATTAGACTGATAGCCGAAAAGAAACCGAGCCCACTGAGAGTGGAGGAGAAGCTCACGTATATGTTCACTCGAGAATTCCTCGTTTTGAATGAAGACCCAATCCAAGTAGATCCCTTAATAAATATGTTGGAGTGTGGATATCTGAAGACAATTAAACTTCGTGTTTGGGATGATTCTGAGGTTTATCTAGCCAACAATTACCCTAACATGACACATTTTCTCGCAAATAGTCGCTTTAGTATTGATTACCTTCGGCCATTTTTCATATGGAAAAATACCGAGACACTGAACCTTCGAGGTTGTTTTATTTTCACACCAAACGACAATTTCGAATGGAAATTTGTGTATTTTTTCCAAAAAATTATAGTCTATGAATTATCTGCTGATGATGTATGGGATGCGCAGCAAGTGAGTTTGTTTTTGGATTATTGATGAAATGAATTTGTTTTTTTAGAATCTCCAATTGGAAGAAAATGAACACCAGCGATACACTGTGATTTGTGATGAGGAAGAGGAATTGATTCCCGATGAAATTGGAAGAACAAGAGGTGCAAGACGAATCCCAGGAAATTTTGATAAACATACTTCACTTGGTTTCCCGTTGAAACATACTCGAAGAGACAGAAATGGAATGACA</canonical>
            <polymorphic>TCTCCCCGATGTTGCGCGTCTGCTGAAAAATTTGCCATAAAAAGCATTACAAGGCTGAAAATTGTGATTTTCTTGGACAAAGTTGAAATCAAAATTCAAGATGACGATAGAAAAATGTTGATCGAGTACAGAAGAAACGAACGCGGGAAAGAAGAAGTGAAGAAAAGGAGAATAGGTGAAGAACAGATAATTGAATACGACACTCCTAGCTACAAGATTCTGGCGGCTTGTGATTTCTATTTTCTCCTGAGAATGCCGTTGTTAAAACTGGAAAGACTTGGAATCAAAATGTATGACATGCCAACCCCCACTTTGCCTCGAAGACATCGTCGATATGTTGATATTTCTCTGTTAAGAATTATCATTAGACTGATAGCCGAAAAGAAACCGAGCCCACTGAGAGTGGAGGAGAAGCTCACGTATATGTTCACTCGAGAATTCCTCGTTTTGAATGAAGACCCAATCCAAGTAGATCCCTTAATAAATATGTTGGAGTGTGRATATCTGAAGACAATTAAACTTCGTGTTTGGGATGATTCTGAGGTTTATCTAGCCAACAATTACCCTAACATGACACATTTTCTCGCAAATAGTCGCTTTAGTATTGATTACCTTCGGCCATTTTTCATATGGAAAAATACCGAGACACTGAACCTTCGAGGTTGTTTTATTTTCACACCAAACGACAATTTCGAATGGAAATTTGTGTATTTTTTCCAAAAAATTATAGTCTATGAATTATCTGCTGATGATGTATGGGATGCGCAGCAAGTGAGTTTGTTTTTGGATTATTGATGAAATGAATTTGTTTTTTTAGAATCTCCAATTGGAAGAAAATGAACACCAGCGATACACTGTGATTTGTGATGAGGAAGAGGAATTGATTCCCGATGAAATTGGAAGAACAAGAGGTGCAAGACGAATCCCAGGAAATTTTGATAAACATACTTCACTTGGTTTCCCGTTGAAACATACTCGAAGAGACAGAAATGGAATGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTCGATATGTTGATATTTCTCT</pcr_primer_p1>
		<pcr_primer_p2>GTGTCATGTTAGGGTAATTGTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTCGATATGTTGATATTTCTCTGTTAAGAATTATCATTAGACTGATAGCCGAAAAGAAACCGAGCCCACTGAGAGTGGAGGAGAAGCTCACGTATATGTTCACTCGAGAATTCCTCGTTTTGAATGAAGACCCAATCCAAGTAGATCCCTTAATAAATATGTTGGAGTGTGGATATCTGAAGACAATTAAACTTCGTGTTTGGGATGATTCTGAGGTTTATCTAGCCAACAATTACCCTAACATGACAC</canonical_amplicon>
		<polymorphic_amplicon>CGTCGATATGTTGATATTTCTCTGTTAAGAATTATCATTAGACTGATAGCCGAAAAGAAACCGAGCCCACTGAGAGTGGAGGAGAAGCTCACGTATATGTTCACTCGAGAATTCCTCGTTTTGAATGAAGACCCAATCCAAGTAGATCCCTTAATAAATATGTTGGAGTGTGRATATCTGAAGACAATTAAACTTCGTGTTTGGGATGATTCTGAGGTTTATCTAGCCAACAATTACCCTAACATGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29697</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>359865</contig_pos>
        <strand>+</strand>
        <context>GGAGTGTGRA[C/T]ATCTGAAGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGAAGACCCAATCCAAGTAGATCCCTTAATAAATATGTTGGAGTGTGGA</left_flank>
        <right_flank>ATCTGAAGACAATTAAACTTCGTGTTTGGGATGATTCTGAGGTTTATCTA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCCCGATGTTGCGCGTCTGCTGAAAAATTTGCCATAAAAAGCATTACAAGGCTGAAAATTGTGATTTTCTTGGACAAAGTTGAAATCAAAATTCAAGATGACGATAGAAAAATGTTGATCGAGTACAGAAGAAACGAACGCGGGAAAGAAGAAGTGAAGAAAAGGAGAATAGGTGAAGAACAGATAATTGAATACGACACTCCTAGCTACAAGATTCTGGCGGCTTGTGATTTCTATTTTCTCCTGAGAATGCCGTTGTTAAAACTGGAAAGACTTGGAATCAAAATGTATGACATGCCAACCCCCACTTTGCCTCGAAGACATCGTCGATATGTTGATATTTCTCTGTTAAGAATTATCATTAGACTGATAGCCGAAAAGAAACCGAGCCCACTGAGAGTGGAGGAGAAGCTCACGTATATGTTCACTCGAGAATTCCTCGTTTTGAATGAAGACCCAATCCAAGTAGATCCCTTAATAAATATGTTGGAGTGTGGATATCTGAAGACAATTAAACTTCGTGTTTGGGATGATTCTGAGGTTTATCTAGCCAACAATTACCCTAACATGACACATTTTCTCGCAAATAGTCGCTTTAGTATTGATTACCTTCGGCCATTTTTCATATGGAAAAATACCGAGACACTGAACCTTCGAGGTTGTTTTATTTTCACACCAAACGACAATTTCGAATGGAAATTTGTGTATTTTTTCCAAAAAATTATAGTCTATGAATTATCTGCTGATGATGTATGGGATGCGCAGCAAGTGAGTTTGTTTTTGGATTATTGATGAAATGAATTTGTTTTTTTAGAATCTCCAATTGGAAGAAAATGAACACCAGCGATACACTGTGATTTGTGATGAGGAAGAGGAATTGATTCCCGATGAAATTGGAAGAACAAGAGGTGCAAGACGAATCCCAGGAAATTTTGATAAACATACTTCACTTGGTTTCCCGTTGAAACATACTCGAAGAGACAGAAATGGAATGACATA</canonical>
            <polymorphic>TCCCCGATGTTGCGCGTCTGCTGAAAAATTTGCCATAAAAAGCATTACAAGGCTGAAAATTGTGATTTTCTTGGACAAAGTTGAAATCAAAATTCAAGATGACGATAGAAAAATGTTGATCGAGTACAGAAGAAACGAACGCGGGAAAGAAGAAGTGAAGAAAAGGAGAATAGGTGAAGAACAGATAATTGAATACGACACTCCTAGCTACAAGATTCTGGCGGCTTGTGATTTCTATTTTCTCCTGAGAATGCCGTTGTTAAAACTGGAAAGACTTGGAATCAAAATGTATGACATGCCAACCCCCACTTTGCCTCGAAGACATCGTCGATATGTTGATATTTCTCTGTTAAGAATTATCATTAGACTGATAGCCGAAAAGAAACCGAGCCCACTGAGAGTGGAGGAGAAGCTCACGTATATGTTCACTCGAGAATTCCTCGTTTTGAATGAAGACCCAATCCAAGTAGATCCCTTAATAAATATGTTGGAGTGTGGAYATCTGAAGACAATTAAACTTCGTGTTTGGGATGATTCTGAGGTTTATCTAGCCAACAATTACCCTAACATGACACATTTTCTCGCAAATAGTCGCTTTAGTATTGATTACCTTCGGCCATTTTTCATATGGAAAAATACCGAGACACTGAACCTTCGAGGTTGTTTTATTTTCACACCAAACGACAATTTCGAATGGAAATTTGTGTATTTTTTCCAAAAAATTATAGTCTATGAATTATCTGCTGATGATGTATGGGATGCGCAGCAAGTGAGTTTGTTTTTGGATTATTGATGAAATGAATTTGTTTTTTTAGAATCTCCAATTGGAAGAAAATGAACACCAGCGATACACTGTGATTTGTGATGAGGAAGAGGAATTGATTCCCGATGAAATTGGAAGAACAAGAGGTGCAAGACGAATCCCAGGAAATTTTGATAAACATACTTCACTTGGTTTCCCGTTGAAACATACTCGAAGAGACAGAAATGGAATGACATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTCGATATGTTGATATTTCTCT</pcr_primer_p1>
		<pcr_primer_p2>GTGTCATGTTAGGGTAATTGTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTCGATATGTTGATATTTCTCTGTTAAGAATTATCATTAGACTGATAGCCGAAAAGAAACCGAGCCCACTGAGAGTGGAGGAGAAGCTCACGTATATGTTCACTCGAGAATTCCTCGTTTTGAATGAAGACCCAATCCAAGTAGATCCCTTAATAAATATGTTGGAGTGTGGATATCTGAAGACAATTAAACTTCGTGTTTGGGATGATTCTGAGGTTTATCTAGCCAACAATTACCCTAACATGACAC</canonical_amplicon>
		<polymorphic_amplicon>CGTCGATATGTTGATATTTCTCTGTTAAGAATTATCATTAGACTGATAGCCGAAAAGAAACCGAGCCCACTGAGAGTGGAGGAGAAGCTCACGTATATGTTCACTCGAGAATTCCTCGTTTTGAATGAAGACCCAATCCAAGTAGATCCCTTAATAAATATGTTGGAGTGTGGAYATCTGAAGACAATTAAACTTCGTGTTTGGGATGATTCTGAGGTTTATCTAGCCAACAATTACCCTAACATGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29698</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>379547</contig_pos>
        <strand>+</strand>
        <context>TCCCTGGACA[A/G]TTCCTTAAYC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGATTATGGCAGCTGTCGACTTCTTCTTCTTCCTCAGAATCCCTGGACA</left_flank>
        <right_flank>TTCCTTAATCAGATCTCCATCGAATTCGAGGAGTACCGATCTGAACAACA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAACAAGAGCGGGTGGAATATTCACCAGAGATTTATGATCCAATCCCTATGCCTGAGCGGGACCCGAACTTGGATATTCAAATGGAAGATATTCAAAAAGTGTATGTCAAAAATGCTCTCGATACATTGGAAGATATAAAACCGGATGATGAGGCTTGCTACTACGTGGACTTGTGAGTATTCGAAATTATTCTTGAGCTTGAAAAATAAAGCGAATTGCAGATTGTACGCCAGAAAGGCCAGCGTAGAATGTCGAGATGCGGCTGATAAACTAGAAAATTTGAAACTTGAGAAATTGAAACTTGTGATTGGTTTTGAAAAAATTCAACTACAAATTTCCCGAAAGTTGGACGAAGATTATGAAACAACTATCACATATGGAAGAAGTGAAGAGGGTTTACATCTGATGGAGTTTGAGAACACATTCTTCCAAGATGGGACTCATTACAAGATTATGGCAGCTGTCGACTTCTTCTTCTTCCTCAGAATCCCTGGACAATTCCTTAATCAGATCTCCATCGAATTCGAGGAGTACCGATCTGAACAACAACCTCCTCAATTCATAGATATGTCGATTCTCGGTGTCATCGCTAAACTGTTCAAGGAAAGACTTGGCGATCGTAAGATCCTTGTGAGAAATTTCAAGTATATGTTCAACAGGGGAGATGATTATCTTGAACCAAAAAAGAGCTACTTCCATGAATTTCTACAAGTTCTGTGGCCCCAAAAACTTCGTCATCTTGTACTTCGAATGTGGGATGATAAAGAAGTTCTTGCAAGTGGATCCTACGACCCAGTGATTCTAAATTGGCCTCGATATTCAGTGGCGTCAAGTTTGGAACAATGGAGAGATGCAAGAACTCTTGATATTTGTGACCCACTTATGTGCAAGTACTGGATAAGTCTTCTTGAAATCCGCAATATCAAAGTGCTGTCGATGACGGCTGCAGACTTGAAGAAGGCTCAAAGTGTGAGTTTTCACCCCTAAAAGGTTTCGAT</canonical>
            <polymorphic>TGAACAAGAGCGGGTGGAATATTCACCAGAGATTTATGATCCAATCCCTATGCCTGAGCGGGACCCGAACTTGGATATTCAAATGGAAGATATTCAAAAAGTGTATGTCAAAAATGCTCTCGATACATTGGAAGATATAAAACCGGATGATGAGGCTTGCTACTACGTGGACTTGTGAGTATTCGAAATTATTCTTGAGCTTGAAAAATAAAGCGAATTGCAGATTGTACGCCAGAAAGGCCAGCGTAGAATGTCGAGATGCGGCTGATAAACTAGAAAATTTGAAACTTGAGAAATTGAAACTTGTGATTGGTTTTGAAAAAATTCAACTACAAATTTCCCGAAAGTTGGACGAAGATTATGAAACAACTATCACATATGGAAGAAGTGAAGAGGGTTTACATCTGATGGAGTTTGAGAACACATTCTTCCAAGATGGGACTCATTACAAGATTATGGCAGCTGTCGACTTCTTCTTCTTCCTCAGAATCCCTGGACARTTCCTTAATCAGATCTCCATCGAATTCGAGGAGTACCGATCTGAACAACAACCTCCTCAATTCATAGATATGTCGATTCTCGGTGTCATCGCTAAACTGTTCAAGGAAAGACTTGGCGATCGTAAGATCCTTGTGAGAAATTTCAAGTATATGTTCAACAGGGGAGATGATTATCTTGAACCAAAAAAGAGCTACTTCCATGAATTTCTACAAGTTCTGTGGCCCCAAAAACTTCGTCATCTTGTACTTCGAATGTGGGATGATAAAGAAGTTCTTGCAAGTGGATCCTACGACCCAGTGATTCTAAATTGGCCTCGATATTCAGTGGCGTCAAGTTTGGAACAATGGAGAGATGCAAGAACTCTTGATATTTGTGACCCACTTATGTGCAAGTACTGGATAAGTCTTCTTGAAATCCGCAATATCAAAGTGCTGTCGATGACGGCTGCAGACTTGAAGAAGGCTCAAAGTGTGAGTTTTCACCCCTAAAAGGTTTCGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>194 186 164 104 80 64 63 36 29 28 24 16 12</canonical_bands>
                <polymorphic_bands>194 188 186 104 80 64 63 36 29 28 16 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACAACTATCACATATGGAAGAA</pcr_primer_p1>
		<pcr_primer_p2>AGTCTTTCCTTGAACAGTTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACAACTATCACATATGGAAGAAGTGAAGAGGGTTTACATCTGATGGAGTTTGAGAACACATTCTTCCAAGATGGGACTCATTACAAGATTATGGCAGCTGTCGACTTCTTCTTCTTCCTCAGAATCCCTGGACAATTCCTTAATCAGATCTCCATCGAATTCGAGGAGTACCGATCTGAACAACAACCTCCTCAATTCATAGATATGTCGATTCTCGGTGTCATCGCTAAACTGTTCAAGGAAAGACT</canonical_amplicon>
		<polymorphic_amplicon>AAACAACTATCACATATGGAAGAAGTGAAGAGGGTTTACATCTGATGGAGTTTGAGAACACATTCTTCCAAGATGGGACTCATTACAAGATTATGGCAGCTGTCGACTTCTTCTTCTTCCTCAGAATCCCTGGACARTTCCTTAATCAGATCTCCATCGAATTCGAGGAGTACCGATCTGAACAACAACCTCCTCAATTCATAGATATGTCGATTCTCGGTGTCATCGCTAAACTGTTCAAGGAAAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29699</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>379556</contig_pos>
        <strand>+</strand>
        <context>ARTTCCTTAA[C/T]CAGATCTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCAGCTGTCGACTTCTTCTTCTTCCTCAGAATCCCTGGACAATTCCTTAA</left_flank>
        <right_flank>CAGATCTCCATCGAATTCGAGGAGTACCGATCTGAACAACAACCTCCTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGGGTGGAATATTCACCAGAGATTTATGATCCAATCCCTATGCCTGAGCGGGACCCGAACTTGGATATTCAAATGGAAGATATTCAAAAAGTGTATGTCAAAAATGCTCTCGATACATTGGAAGATATAAAACCGGATGATGAGGCTTGCTACTACGTGGACTTGTGAGTATTCGAAATTATTCTTGAGCTTGAAAAATAAAGCGAATTGCAGATTGTACGCCAGAAAGGCCAGCGTAGAATGTCGAGATGCGGCTGATAAACTAGAAAATTTGAAACTTGAGAAATTGAAACTTGTGATTGGTTTTGAAAAAATTCAACTACAAATTTCCCGAAAGTTGGACGAAGATTATGAAACAACTATCACATATGGAAGAAGTGAAGAGGGTTTACATCTGATGGAGTTTGAGAACACATTCTTCCAAGATGGGACTCATTACAAGATTATGGCAGCTGTCGACTTCTTCTTCTTCCTCAGAATCCCTGGACAATTCCTTAATCAGATCTCCATCGAATTCGAGGAGTACCGATCTGAACAACAACCTCCTCAATTCATAGATATGTCGATTCTCGGTGTCATCGCTAAACTGTTCAAGGAAAGACTTGGCGATCGTAAGATCCTTGTGAGAAATTTCAAGTATATGTTCAACAGGGGAGATGATTATCTTGAACCAAAAAAGAGCTACTTCCATGAATTTCTACAAGTTCTGTGGCCCCAAAAACTTCGTCATCTTGTACTTCGAATGTGGGATGATAAAGAAGTTCTTGCAAGTGGATCCTACGACCCAGTGATTCTAAATTGGCCTCGATATTCAGTGGCGTCAAGTTTGGAACAATGGAGAGATGCAAGAACTCTTGATATTTGTGACCCACTTATGTGCAAGTACTGGATAAGTCTTCTTGAAATCCGCAATATCAAAGTGCTGTCGATGACGGCTGCAGACTTGAAGAAGGCTCAAAGTGTGAGTTTTCACCCCTAAAAGGTTTCGATTCGAAATTT</canonical>
            <polymorphic>GCGGGTGGAATATTCACCAGAGATTTATGATCCAATCCCTATGCCTGAGCGGGACCCGAACTTGGATATTCAAATGGAAGATATTCAAAAAGTGTATGTCAAAAATGCTCTCGATACATTGGAAGATATAAAACCGGATGATGAGGCTTGCTACTACGTGGACTTGTGAGTATTCGAAATTATTCTTGAGCTTGAAAAATAAAGCGAATTGCAGATTGTACGCCAGAAAGGCCAGCGTAGAATGTCGAGATGCGGCTGATAAACTAGAAAATTTGAAACTTGAGAAATTGAAACTTGTGATTGGTTTTGAAAAAATTCAACTACAAATTTCCCGAAAGTTGGACGAAGATTATGAAACAACTATCACATATGGAAGAAGTGAAGAGGGTTTACATCTGATGGAGTTTGAGAACACATTCTTCCAAGATGGGACTCATTACAAGATTATGGCAGCTGTCGACTTCTTCTTCTTCCTCAGAATCCCTGGACAATTCCTTAAYCAGATCTCCATCGAATTCGAGGAGTACCGATCTGAACAACAACCTCCTCAATTCATAGATATGTCGATTCTCGGTGTCATCGCTAAACTGTTCAAGGAAAGACTTGGCGATCGTAAGATCCTTGTGAGAAATTTCAAGTATATGTTCAACAGGGGAGATGATTATCTTGAACCAAAAAAGAGCTACTTCCATGAATTTCTACAAGTTCTGTGGCCCCAAAAACTTCGTCATCTTGTACTTCGAATGTGGGATGATAAAGAAGTTCTTGCAAGTGGATCCTACGACCCAGTGATTCTAAATTGGCCTCGATATTCAGTGGCGTCAAGTTTGGAACAATGGAGAGATGCAAGAACTCTTGATATTTGTGACCCACTTATGTGCAAGTACTGGATAAGTCTTCTTGAAATCCGCAATATCAAAGTGCTGTCGATGACGGCTGCAGACTTGAAGAAGGCTCAAAGTGTGAGTTTTCACCCCTAAAAGGTTTCGATTCGAAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>467 397 80 31 25</canonical_bands>
                <polymorphic_bands>467 397 80 56</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACAACTATCACATATGGAAGAA</pcr_primer_p1>
		<pcr_primer_p2>AGTCTTTCCTTGAACAGTTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACAACTATCACATATGGAAGAAGTGAAGAGGGTTTACATCTGATGGAGTTTGAGAACACATTCTTCCAAGATGGGACTCATTACAAGATTATGGCAGCTGTCGACTTCTTCTTCTTCCTCAGAATCCCTGGACAATTCCTTAATCAGATCTCCATCGAATTCGAGGAGTACCGATCTGAACAACAACCTCCTCAATTCATAGATATGTCGATTCTCGGTGTCATCGCTAAACTGTTCAAGGAAAGACT</canonical_amplicon>
		<polymorphic_amplicon>AAACAACTATCACATATGGAAGAAGTGAAGAGGGTTTACATCTGATGGAGTTTGAGAACACATTCTTCCAAGATGGGACTCATTACAAGATTATGGCAGCTGTCGACTTCTTCTTCTTCCTCAGAATCCCTGGACAATTCCTTAAYCAGATCTCCATCGAATTCGAGGAGTACCGATCTGAACAACAACCTCCTCAATTCATAGATATGTCGATTCTCGGTGTCATCGCTAAACTGTTCAAGGAAAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29700</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>379580</contig_pos>
        <strand>+</strand>
        <context>AATTCGAGGA[A/G]TACCGATCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCAGAATCCCTGGACAATTCCTTAATCAGATCTCCATCGAATTCGAGGA</left_flank>
        <right_flank>TACCGATCTGAACAACAACCTCCTCAATTCATAGATATGTCGATTCTCGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATGATCCAATCCCTATGCCTGAGCGGGACCCGAACTTGGATATTCAAATGGAAGATATTCAAAAAGTGTATGTCAAAAATGCTCTCGATACATTGGAAGATATAAAACCGGATGATGAGGCTTGCTACTACGTGGACTTGTGAGTATTCGAAATTATTCTTGAGCTTGAAAAATAAAGCGAATTGCAGATTGTACGCCAGAAAGGCCAGCGTAGAATGTCGAGATGCGGCTGATAAACTAGAAAATTTGAAACTTGAGAAATTGAAACTTGTGATTGGTTTTGAAAAAATTCAACTACAAATTTCCCGAAAGTTGGACGAAGATTATGAAACAACTATCACATATGGAAGAAGTGAAGAGGGTTTACATCTGATGGAGTTTGAGAACACATTCTTCCAAGATGGGACTCATTACAAGATTATGGCAGCTGTCGACTTCTTCTTCTTCCTCAGAATCCCTGGACAATTCCTTAATCAGATCTCCATCGAATTCGAGGAGTACCGATCTGAACAACAACCTCCTCAATTCATAGATATGTCGATTCTCGGTGTCATCGCTAAACTGTTCAAGGAAAGACTTGGCGATCGTAAGATCCTTGTGAGAAATTTCAAGTATATGTTCAACAGGGGAGATGATTATCTTGAACCAAAAAAGAGCTACTTCCATGAATTTCTACAAGTTCTGTGGCCCCAAAAACTTCGTCATCTTGTACTTCGAATGTGGGATGATAAAGAAGTTCTTGCAAGTGGATCCTACGACCCAGTGATTCTAAATTGGCCTCGATATTCAGTGGCGTCAAGTTTGGAACAATGGAGAGATGCAAGAACTCTTGATATTTGTGACCCACTTATGTGCAAGTACTGGATAAGTCTTCTTGAAATCCGCAATATCAAAGTGCTGTCGATGACGGCTGCAGACTTGAAGAAGGCTCAAAGTGTGAGTTTTCACCCCTAAAAGGTTTCGATTCGAAATTTTGTATTTTCCAGGTTTCGAGAAAT</canonical>
            <polymorphic>TTATGATCCAATCCCTATGCCTGAGCGGGACCCGAACTTGGATATTCAAATGGAAGATATTCAAAAAGTGTATGTCAAAAATGCTCTCGATACATTGGAAGATATAAAACCGGATGATGAGGCTTGCTACTACGTGGACTTGTGAGTATTCGAAATTATTCTTGAGCTTGAAAAATAAAGCGAATTGCAGATTGTACGCCAGAAAGGCCAGCGTAGAATGTCGAGATGCGGCTGATAAACTAGAAAATTTGAAACTTGAGAAATTGAAACTTGTGATTGGTTTTGAAAAAATTCAACTACAAATTTCCCGAAAGTTGGACGAAGATTATGAAACAACTATCACATATGGAAGAAGTGAAGAGGGTTTACATCTGATGGAGTTTGAGAACACATTCTTCCAAGATGGGACTCATTACAAGATTATGGCAGCTGTCGACTTCTTCTTCTTCCTCAGAATCCCTGGACAATTCCTTAATCAGATCTCCATCGAATTCGAGGARTACCGATCTGAACAACAACCTCCTCAATTCATAGATATGTCGATTCTCGGTGTCATCGCTAAACTGTTCAAGGAAAGACTTGGCGATCGTAAGATCCTTGTGAGAAATTTCAAGTATATGTTCAACAGGGGAGATGATTATCTTGAACCAAAAAAGAGCTACTTCCATGAATTTCTACAAGTTCTGTGGCCCCAAAAACTTCGTCATCTTGTACTTCGAATGTGGGATGATAAAGAAGTTCTTGCAAGTGGATCCTACGACCCAGTGATTCTAAATTGGCCTCGATATTCAGTGGCGTCAAGTTTGGAACAATGGAGAGATGCAAGAACTCTTGATATTTGTGACCCACTTATGTGCAAGTACTGGATAAGTCTTCTTGAAATCCGCAATATCAAAGTGCTGTCGATGACGGCTGCAGACTTGAAGAAGGCTCAAAGTGTGAGTTTTCACCCCTAAAAGGTTTCGATTCGAAATTTTGTATTTTCCAGGTTTCGAGAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>306 211 195 149 139</canonical_bands>
                <polymorphic_bands>517 195 149 139</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACAACTATCACATATGGAAGAA</pcr_primer_p1>
		<pcr_primer_p2>AGTCTTTCCTTGAACAGTTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACAACTATCACATATGGAAGAAGTGAAGAGGGTTTACATCTGATGGAGTTTGAGAACACATTCTTCCAAGATGGGACTCATTACAAGATTATGGCAGCTGTCGACTTCTTCTTCTTCCTCAGAATCCCTGGACAATTCCTTAATCAGATCTCCATCGAATTCGAGGAGTACCGATCTGAACAACAACCTCCTCAATTCATAGATATGTCGATTCTCGGTGTCATCGCTAAACTGTTCAAGGAAAGACT</canonical_amplicon>
		<polymorphic_amplicon>AAACAACTATCACATATGGAAGAAGTGAAGAGGGTTTACATCTGATGGAGTTTGAGAACACATTCTTCCAAGATGGGACTCATTACAAGATTATGGCAGCTGTCGACTTCTTCTTCTTCCTCAGAATCCCTGGACAATTCCTTAATCAGATCTCCATCGAATTCGAGGARTACCGATCTGAACAACAACCTCCTCAATTCATAGATATGTCGATTCTCGGTGTCATCGCTAAACTGTTCAAGGAAAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29701</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>381261</contig_pos>
        <strand>+</strand>
        <context>TGRCGGCCCA[A/G]TGGCRGYCYA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCA</left_flank>
        <right_flank>TGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGG</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACCCAAAACTTTCCAACCCGCCATTTTTTGTATGTTGTTTGTTTTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTC</canonical>
            <polymorphic>TACCCAAAACTTTCCAACCCGCCATTTTTTGTATGTTGTTTGTTTTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCARTGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTATGGGGATTTTGTGATTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAGAGAAGGTGACTCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>CTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCARTGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29702</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>381268</contig_pos>
        <strand>+</strand>
        <context>CCARTGGCRG[C/T]CYAGCGGYGR</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGG</left_flank>
        <right_flank>CTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGAT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTTTCCAACCCGCCATTTTTTGTATGTTGTTTGTTTTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTTGG</canonical>
            <polymorphic>AACTTTCCAACCCGCCATTTTTTGTATGTTGTTTGTTTTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGYCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTATGGGGATTTTGTGATTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAGAGAAGGTGACTCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>CTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGYCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29703</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>381270</contig_pos>
        <strand>+</strand>
        <context>ARTGGCRGYC[C/T]AGCGGYGRYC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTC</left_flank>
        <right_flank>AGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTCCAACCCGCCATTTTTTGTATGTTGTTTGTTTTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTTGGCT</canonical>
            <polymorphic>CTTTCCAACCCGCCATTTTTTGTATGTTGTTTGTTTTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCYAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTTGGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>479 467 32 22</canonical_bands>
                <polymorphic_bands>479 467 54</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTATGGGGATTTTGTGATTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAGAGAAGGTGACTCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>CTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCYAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29704</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>381276</contig_pos>
        <strand>+</strand>
        <context>RGYCYAGCGG[C/T]GRYCCARYGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGG</left_flank>
        <right_flank>GGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCCGCCATTTTTTGTATGTTGTTTGTTTTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTTGGCTGGGATT</canonical>
            <polymorphic>AACCCGCCATTTTTTGTATGTTGTTTGTTTTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGYGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTTGGCTGGGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>222 109 107 88 71 57 56 47 45 35 33 25 22 18 16 13 11 11 9 5</canonical_bands>
                <polymorphic_bands>222 109 107 88 71 57 56 47 45 36 35 33 22 18 16 13 11 9 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTACGCCACTAGTCAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTAGTAATTCTCTTCGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGYGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29705</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>381278</contig_pos>
        <strand>+</strand>
        <context>YCYAGCGGYG[A/G]YCCARYGGYG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTG</left_flank>
        <right_flank>TCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCGCCATTTTTTGTATGTTGTTTGTTTTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTTGGCTGGGATTAT</canonical>
            <polymorphic>CCCGCCATTTTTTGTATGTTGTTTGTTTTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGRTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTTGGCTGGGATTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>499 479 22</canonical_bands>
                <polymorphic_bands>521 479</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>477 468 22 22 11</canonical_bands>
                <polymorphic_bands>477 468 44 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTACGCCACTAGTCAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTAGTAATTCTCTTCGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGRTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29706</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>381279</contig_pos>
        <strand>+</strand>
        <context>CYAGCGGYGR[C/T]CCARYGGYGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGG</left_flank>
        <right_flank>CCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGCCATTTTTTGTATGTTGTTTGTTTTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTTGGCTGGGATTATA</canonical>
            <polymorphic>CCGCCATTTTTTGTATGTTGTTTGTTTTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGYCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTTGGCTGGGATTATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>498 480 22</canonical_bands>
                <polymorphic_bands>520 480</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTACGCCACTAGTCAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTAGTAATTCTCTTCGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGYCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29707</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>381283</contig_pos>
        <strand>+</strand>
        <context>CGGYGRYCCA[A/G]YGGYGGYCYA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCA</left_flank>
        <right_flank>TGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTTTTGTATGTTGTTTGTTTTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTTGGCTGGGATTATATAGA</canonical>
            <polymorphic>CATTTTTTGTATGTTGTTTGTTTTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCARTGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTTGGCTGGGATTATATAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTACGCCACTAGTCAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTAGTAATTCTCTTCGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCARTGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29708</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>381284</contig_pos>
        <strand>+</strand>
        <context>GGYGRYCCAR[C/T]GGYGGYCYAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAA</left_flank>
        <right_flank>GGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTGTATGTTGTTTGTTTTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTTGGCTGGGATTATATAGAA</canonical>
            <polymorphic>ATTTTTTGTATGTTGTTTGTTTTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAAYGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTTGGCTGGGATTATATAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTACGCCACTAGTCAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTAGTAATTCTCTTCGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAAYGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29709</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>381287</contig_pos>
        <strand>+</strand>
        <context>GRYCCARYGG[C/T]GGYCYAGMGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGG</left_flank>
        <right_flank>GGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGTATGTTGTTTGTTTTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTTGGCTGGGATTATATAGAAATC</canonical>
            <polymorphic>TTTTGTATGTTGTTTGTTTTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGYGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTTGGCTGGGATTATATAGAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>222 109 107 88 71 58 57 45 45 35 33 25 22 18 16 13 11 11 9 5</canonical_bands>
                <polymorphic_bands>222 109 107 88 71 58 57 45 45 35 33 25 22 22 18 16 13 9 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTACGCCACTAGTCAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTAGTAATTCTCTTCGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGYGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29710</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>381290</contig_pos>
        <strand>+</strand>
        <context>CCARYGGYGG[C/T]CYAGMGGYGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGG</left_flank>
        <right_flank>CTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTATGTTGTTTGTTTTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTTGGCTGGGATTATATAGAAATCCGA</canonical>
            <polymorphic>TGTATGTTGTTTGTTTTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGYCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTTGGCTGGGATTATATAGAAATCCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTACGCCACTAGTCAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTAGTAATTCTCTTCGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGYCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29711</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>381292</contig_pos>
        <strand>+</strand>
        <context>ARYGGYGGYC[C/T]AGMGGYGGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTC</left_flank>
        <right_flank>AGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGTTGTTTGTTTTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTTGGCTGGGATTATATAGAAATCCGAAT</canonical>
            <polymorphic>TATGTTGTTTGTTTTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCYAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTTGGCTGGGATTATATAGAAATCCGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 445 32 22</canonical_bands>
                <polymorphic_bands>523 445 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTACGCCACTAGTCAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTAGTAATTCTCTTCGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCYAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29712</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>381303</contig_pos>
        <strand>+</strand>
        <context>AGMGGYGGTC[C/T]ARTGGCGGCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTC</left_flank>
        <right_flank>AATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTTGGCTGGGATTATATAGAAATCCGAATTAATGATGTTC</canonical>
            <polymorphic>TTTTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCYAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTTGGCTGGGATTATATAGAAATCCGAATTAATGATGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>504 474 22</canonical_bands>
                <polymorphic_bands>526 474</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>493 452 22 22 11</canonical_bands>
                <polymorphic_bands>493 452 33 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTACGCCACTAGTCAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTAGTAATTCTCTTCGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCYAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29713</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>381305</contig_pos>
        <strand>+</strand>
        <context>MGGYGGTCYA[A/G]TGGCGGCCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCA</left_flank>
        <right_flank>TGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTTGGCTGGGATTATATAGAAATCCGAATTAATGATGTTCAT</canonical>
            <polymorphic>TTTTTTTTGAAAATCCTTCTGGAACCACATTTCTTTTTTTTCTCACTATCAGTTTTCCCCCCAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCARTGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTTGGCTGGGATTATATAGAAATCCGAATTAATGATGTTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTACGCCACTAGTCAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTAGTAATTCTCTTCGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCARTGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29714</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>381366</contig_pos>
        <strand>+</strand>
        <context>GCTCAAAAAA[A/T]TTTTTCAGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAA</left_flank>
        <right_flank>TTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTTGGCTGGGATTATATAGAAATCCGAATTAATGATGTTCATGGGACCAGAATGAGCATATTCTATGAGGATAATCAAGGAAAAACCCTAGTGAAACACCCCA</canonical>
            <polymorphic>CAAGTCTTTTTTTCAATTTTCCAATTCCCAGAATTGTCCAGAATGACTGACTCCGATGACGACATAATCATGGAAACGAAAATTCCTGGCACAGAAATCACGTACAAAGATTTTTTGACGGATCAGTTTGAGCAACGATTCTCCATGGAGAGAGCTCATTTTCTACTGGCACAAGCTGTTGAAGGTAGGAGCTGAAAATATGATCTGTAAATTTAAGAATTTCTTTCCAGAAAAATCTGATCGAAAGCGTCCAAGAACGTCAGAGGGAGAAGAAGTTTCACCAGCCAAAAAACGCTATTATGGGGATTTTGTGATTTCAGGTATTTTATTTTCGAACTTAAGCATGTTCCCCGTTATTTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAAWTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTGCCCTTTACGATCCTGTCGAGTTTATTGGATTTTCTGAAGACCCGATTCCAATGAAAAAAGTTCGAAATCTGTATGGGCAGTTAGCCATGAAGAAATTGAAGGAAATTGAAAAAGACGAGAATGGAGTAGTGAAGGATATCAAGGATTGTTGTGATCTGTAAGGCTTTTGGAAATTTCTGATTTTTTTTTTTCTTTTTTTTCTTTTTTCCAGAATGCTCTACAGACGAATCAACGATGAGTGTTGGGAGAACGTGGAGTGGAGCTACTTGAAAATCAAAAAGCTAAAACTTCTCGTTGGCTGGGATTATATAGAAATCCGAATTAATGATGTTCATGGGACCAGAATGAGCATATTCTATGAGGATAATCAAGGAAAAACCCTAGTGAAACACCCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>280 278 225 129 80 8</canonical_bands>
                <polymorphic_bands>558 225 129 80 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>280 148 129 106 94 77 68 49 14 10 9 8 8</canonical_bands>
                <polymorphic_bands>374 148 129 106 77 68 49 14 10 9 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTACGCCACTAGTCAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTAGTAATTCTCTTCGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAATTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTACGCCACTAGTCAAGCCCAGTGGCGGCCCAATGGCGGTCTAGCGGTGGTCCAATGGTGGTCTAGCGGTGGTCCAATGGCGGCCCAGATTTTTCGACCGCTGTCGGCTGCGTACACAAGCTTTTAGGCTCAAAAAAWTTTTTCAGAGTCACCTTCTCTTTCGTTGGAAGAGCTCAAAAAGCGGACGCCGCGAAGAATAAAAAAATCGATAATCCAGGAAATCGAAGAGAATTACTACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29715</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>429197</contig_pos>
        <strand>+</strand>
        <context>CGATTCTTAA[A/C]AACTGTTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAGAAATGTCAAGTCAGAAGCCGCCACAAAACATGGCATTCGATTCTTAA</left_flank>
        <right_flank>AACTGTTTTGTATAGGACACCGGCTTTCGGGCAATCTTGTTCATTCCAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCGAATATCCAAAGTCATCCTTTGACGCCACTGATCCATCGAAGTAATCGTATCGTTCATAAACATCTTCAATCTTCCTCCTATTTTAGTTTGTTTGAGCCGTTCGTATTTTTCTCGATACTTCTCGCTATTCACCACTTCCTTGTCATCCCATACTCGAAGTGCCAACGTGGCCAGGTTCTCCGTTATCAGATGTTTCAAAATGAACCATAACGCATGAGAGTCTTGCCATTCCTCACTGTCCGGATCCTGGAATCGTTTCTCTCTAGTGAACATGAATGTCAGCTTTTGAACTGGAATCGTTTCAAGACACTTTTTAGCAGATGCTTGAAAAAATTCGTCAAACACTTCTAATGCAGAAATATCGGGGAATTCCAGAGGGTGCGTCTTGCGCCATGTGTCAAGGGTAAACTCCAACTCATCCAATATACCCGAGTGTCTCCTTATGAGAAATGTCAAGTCAGAAGCCGCCACAAAACATGGCATTCGATTCTTAACAACTGTTTTGTATAGGACACCGGCTTTCGGGCAATCTTGTTCATTCCAATAGTAGGCAATGCAGGTATCGGGTCCTTTTGGAAAGTAGATTATACGACCCCATTCGCGTTTTGTTCTTATGTAGATGCGAAGCTCCTTGTTTGGATAAATCGTCACTTTCAATTTTTCCATTTGAATTTCTATCGTTGTTGTTGTTTTTGTTCGCTCTGAGCACCTCTTGGAGAGTCGTCGACAGAACATTCTGGAATTTAATACTTCGTGATAAGGCACTCAAAATGATGAGGACCACTTATTTTAAAGCTAGGAGTGTAAGCTCGTGGCCCGAAATTCATAGACGAATTTTTCGAAAATAGATATTCTAATTGTTTTCATTGAAATTTAGCAAACTTCAAGCTTTTACAATAGTAACTCAAAAGTGTCCGATAATCCTGAAAATTTCAGAGTATATGAAAAAAATAGAGCTTTATTTTAGTAATTAGCACATTTTTGATACTAACGCG</canonical>
            <polymorphic>TCTCGAATATCCAAAGTCATCCTTTGACGCCACTGATCCATCGAAGTAATCGTATCGTTCATAAACATCTTCAATCTTCCTCCTATTTTAGTTTGTTTGAGCCGTTCGTATTTTTCTCGATACTTCTCGCTATTCACCACTTCCTTGTCATCCCATACTCGAAGTGCCAACGTGGCCAGGTTCTCCGTTATCAGATGTTTCAAAATGAACCATAACGCATGAGAGTCTTGCCATTCCTCACTGTCCGGATCCTGGAATCGTTTCTCTCTAGTGAACATGAATGTCAGCTTTTGAACTGGAATCGTTTCAAGACACTTTTTAGCAGATGCTTGAAAAAATTCGTCAAACACTTCTAATGCAGAAATATCGGGGAATTCCAGAGGGTGCGTCTTGCGCCATGTGTCAAGGGTAAACTCCAACTCATCCAATATACCCGAGTGTCTCCTTATGAGAAATGTCAAGTCAGAAGCCGCCACAAAACATGGCATTCGATTCTTAAMAACTGTTTTGTATAGGACACCGGCTTTCGGGCAATCTTGTTCATTCCAATAGTAGGCAATGCAGGTATCGGGTCCTTTTGGAAAGTAGATTATACGACCCCATTCGCGTTTTGTTCTTATGTAGATGCGAAGCTCCTTGTTTGGATAAATCGTCACTTTCAATTTTTCCATTTGAATTTCTATCGTTGTTGTTGTTTTTGTTCGCTCTGAGCACCTCTTGGAGAGTCGTCGACAGAACATTCTGGAATTTAATACTTCGTGATAAGGCACTCAAAATGATGAGGACCACTTATTTTAAAGCTAGGAGTGTAAGCTCGTGGCCCGAAATTCATAGACGAATTTTTCGAAAATAGATATTCTAATTGTTTTCATTGAAATTTAGCAAACTTCAAGCTTTTACAATAGTAACTCAAAAGTGTCCGATAATCCTGAAAATTTCAGAGTATATGAAAAAAATAGAGCTTTATTTTAGTAATTAGCACATTTTTGATACTAACGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTATGAGAAATGTCAAGTCAG</pcr_primer_p1>
		<pcr_primer_p2>AACAACAACGATAGAAATTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTTATGAGAAATGTCAAGTCAGAAGCCGCCACAAAACATGGCATTCGATTCTTAACAACTGTTTTGTATAGGACACCGGCTTTCGGGCAATCTTGTTCATTCCAATAGTAGGCAATGCAGGTATCGGGTCCTTTTGGAAAGTAGATTATACGACCCCATTCGCGTTTTGTTCTTATGTAGATGCGAAGCTCCTTGTTTGGATAAATCGTCACTTTCAATTTTTCCATTTGAATTTCTATCGTTGTTGTT</canonical_amplicon>
		<polymorphic_amplicon>CCTTATGAGAAATGTCAAGTCAGAAGCCGCCACAAAACATGGCATTCGATTCTTAAMAACTGTTTTGTATAGGACACCGGCTTTCGGGCAATCTTGTTCATTCCAATAGTAGGCAATGCAGGTATCGGGTCCTTTTGGAAAGTAGATTATACGACCCCATTCGCGTTTTGTTCTTATGTAGATGCGAAGCTCCTTGTTTGGATAAATCGTCACTTTCAATTTTTCCATTTGAATTTCTATCGTTGTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29716</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>456205</contig_pos>
        <strand>+</strand>
        <context>CCGTTTTCTG[C/T]RGAYACATCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTG</left_flank>
        <right_flank>GGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAATCCCCATGATTTTTTCCGTTTTATATATGTACTGTACTGTTTTGTTAATTTTTCACTACTTCAAATTGTAGGCACGATTCTCACCGCCTAGTTTTTCACCTCGAAATTGCATATTCATCGTTTGAATCGCTAGAAATCATGGTCTATAAAATTTTTAGTCTCATTTTGTTTTCTATTTTTTTATAGTTTCAGTTGGTCATTATTTCCTGCAAAATGATATATCGGCAATACTTCAATGAGAGTTTTTGAAAAATTCGAAGATTTTTTTTGATGCATAATTTTCAGAAACGACAGTAGCTGTGAGTTCGTTAACCCTCCTAATTTTCTTGGGCAGGCGCTTCACCGTTTTTGCTTTGTAAGTGATTTGTTTTCTTTGGATGTCAAAAATTACAATAGCTGTAAAGCCGAAATTCTCTGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAAAACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACCGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGGAAAT</canonical>
            <polymorphic>CAGAATCCCCATGATTTTTTCCGTTTTATATATGTACTGTACTGTTTTGTTAATTTTTCACTACTTCAAATTGTAGGCACGATTCTCACCGCCTAGTTTTTCACCTCGAAATTGCATATTCATCGTTTGAATCGCTAGAAATCATGGTCTATAAAATTTTTAGTCTCATTTTGTTTTCTATTTTTTTATAGTTTCAGTTGGTCATTATTTCCTGCAAAATGATATATCGGCAATACTTCAATGAGAGTTTTTGAAAAATTCGAAGATTTTTTTTGATGCATAATTTTCAGAAACGACAGTAGCTGTGAGTTCGTTAACCCTCCTAATTTTCTTGGGCAGGCGCTTCACCGTTTTTGCTTTGTAAGTGATTTGTTTTCTTTGGATGTCAAAAATTACAATAGCTGTAAAGCCGAAATTCTCTGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGYGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAAAACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACCGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGGAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>204 151 120 109 93 77 60 57 40 20 19 15 14 9 6 4 2</canonical_bands>
                <polymorphic_bands>204 151 120 109 93 77 60 57 40 20 19 18 15 9 6 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>315 237 180 109 77 35 29 18</canonical_bands>
                <polymorphic_bands>315 314 180 109 35 29 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATTCTCTGTAAACCAGTCAA</pcr_primer_p1>
		<pcr_primer_p2>TCACACTTTCTCAAAACTGTACTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAATTCTCTGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGA</canonical_amplicon>
		<polymorphic_amplicon>GAAATTCTCTGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGYGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29717</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>456206</contig_pos>
        <strand>+</strand>
        <context>CGTTTTCTGY[A/G]GAYACATCGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGT</left_flank>
        <right_flank>GACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAATCCCCATGATTTTTTCCGTTTTATATATGTACTGTACTGTTTTGTTAATTTTTCACTACTTCAAATTGTAGGCACGATTCTCACCGCCTAGTTTTTCACCTCGAAATTGCATATTCATCGTTTGAATCGCTAGAAATCATGGTCTATAAAATTTTTAGTCTCATTTTGTTTTCTATTTTTTTATAGTTTCAGTTGGTCATTATTTCCTGCAAAATGATATATCGGCAATACTTCAATGAGAGTTTTTGAAAAATTCGAAGATTTTTTTTGATGCATAATTTTCAGAAACGACAGTAGCTGTGAGTTCGTTAACCCTCCTAATTTTCTTGGGCAGGCGCTTCACCGTTTTTGCTTTGTAAGTGATTTGTTTTCTTTGGATGTCAAAAATTACAATAGCTGTAAAGCCGAAATTCTCTGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAAAACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACCGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGGAAATC</canonical>
            <polymorphic>AGAATCCCCATGATTTTTTCCGTTTTATATATGTACTGTACTGTTTTGTTAATTTTTCACTACTTCAAATTGTAGGCACGATTCTCACCGCCTAGTTTTTCACCTCGAAATTGCATATTCATCGTTTGAATCGCTAGAAATCATGGTCTATAAAATTTTTAGTCTCATTTTGTTTTCTATTTTTTTATAGTTTCAGTTGGTCATTATTTCCTGCAAAATGATATATCGGCAATACTTCAATGAGAGTTTTTGAAAAATTCGAAGATTTTTTTTGATGCATAATTTTCAGAAACGACAGTAGCTGTGAGTTCGTTAACCCTCCTAATTTTCTTGGGCAGGCGCTTCACCGTTTTTGCTTTGTAAGTGATTTGTTTTCTTTGGATGTCAAAAATTACAATAGCTGTAAAGCCGAAATTCTCTGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTRGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAAAACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACCGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGGAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>204 151 120 109 94 77 59 57 40 20 19 15 14 9 6 4 2</canonical_bands>
                <polymorphic_bands>204 151 120 109 94 77 59 57 40 20 19 18 15 9 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATTCTCTGTAAACCAGTCAA</pcr_primer_p1>
		<pcr_primer_p2>TCACACTTTCTCAAAACTGTACTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAATTCTCTGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGA</canonical_amplicon>
		<polymorphic_amplicon>GAAATTCTCTGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTRGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29718</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>456209</contig_pos>
        <strand>+</strand>
        <context>TTTCTGYRGA[C/T]ACATCGTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTGGA</left_flank>
        <right_flank>ACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCCCATGATTTTTTCCGTTTTATATATGTACTGTACTGTTTTGTTAATTTTTCACTACTTCAAATTGTAGGCACGATTCTCACCGCCTAGTTTTTCACCTCGAAATTGCATATTCATCGTTTGAATCGCTAGAAATCATGGTCTATAAAATTTTTAGTCTCATTTTGTTTTCTATTTTTTTATAGTTTCAGTTGGTCATTATTTCCTGCAAAATGATATATCGGCAATACTTCAATGAGAGTTTTTGAAAAATTCGAAGATTTTTTTTGATGCATAATTTTCAGAAACGACAGTAGCTGTGAGTTCGTTAACCCTCCTAATTTTCTTGGGCAGGCGCTTCACCGTTTTTGCTTTGTAAGTGATTTGTTTTCTTTGGATGTCAAAAATTACAATAGCTGTAAAGCCGAAATTCTCTGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAAAACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACCGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGGAAATCTTT</canonical>
            <polymorphic>ATCCCCATGATTTTTTCCGTTTTATATATGTACTGTACTGTTTTGTTAATTTTTCACTACTTCAAATTGTAGGCACGATTCTCACCGCCTAGTTTTTCACCTCGAAATTGCATATTCATCGTTTGAATCGCTAGAAATCATGGTCTATAAAATTTTTAGTCTCATTTTGTTTTCTATTTTTTTATAGTTTCAGTTGGTCATTATTTCCTGCAAAATGATATATCGGCAATACTTCAATGAGAGTTTTTGAAAAATTCGAAGATTTTTTTTGATGCATAATTTTCAGAAACGACAGTAGCTGTGAGTTCGTTAACCCTCCTAATTTTCTTGGGCAGGCGCTTCACCGTTTTTGCTTTGTAAGTGATTTGTTTTCTTTGGATGTCAAAAATTACAATAGCTGTAAAGCCGAAATTCTCTGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTGGAYACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAAAACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACCGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGGAAATCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>204 151 120 109 97 77 57 56 40 20 19 15 14 9 6 4 2</canonical_bands>
                <polymorphic_bands>204 155 120 109 97 77 57 56 40 20 19 15 14 9 6 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>311 237 184 109 77 35 29 18</canonical_bands>
                <polymorphic_bands>314 311 184 109 35 29 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATTCTCTGTAAACCAGTCAA</pcr_primer_p1>
		<pcr_primer_p2>TCACACTTTCTCAAAACTGTACTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAATTCTCTGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGA</canonical_amplicon>
		<polymorphic_amplicon>GAAATTCTCTGTAAACCAGTCAAATTTCGTTTGAAAACCTTTCAGCCGTTTATGTTCATGTCAGTTTATGCCAGTGTTCCGTTTTCTGTGGAYACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29719</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>456676</contig_pos>
        <strand>+</strand>
        <context>TTGAAAGTAG[A/G]AAAAAAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAG</left_flank>
        <right_flank>AAAAAAATTTCATTCGAATTTTTGGAAATCTTTAATAAAAAATGATAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGTTTATGCCAGTGTTCCGTTTTCTGTGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAAAACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACCGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGGAAATCTTTAATAAAAAATGATAAAAATCTACATATTATGCTTCAGACTTGCTAAGATCCCCATTTTTTAAGGTAGATAAAATCTCTCTGTTTAGACGAATTTTAGTGGAAAAGTGGAACTTGTGGACCACCCAATCACCTTCAGTCAGACCTTGCCTGTTTTTTTATACAATTTAGTATACCAGTTTCCCAAAAATACATGTTCTGCTTTTCATATCCATCTGAACCTTTTAAAGGTGGGGGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCTCTTTAACGCGTAGACTTCAATTAAAGGTTCAGTGAAATCAAACAACATATTCATCTGTTTCAACGTATTCATTAGGCCAACATCTCTAATTACCCTAACTCAACCTTATTATTTCATCTATCACCTTCTATCTCTTTGTTTTTTCAAAACAATTCCGTGATTCCATTATCAACTTTTTATATCA</canonical>
            <polymorphic>TCAGTTTATGCCAGTGTTCCGTTTTCTGTGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAAAACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACCGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGRAAAAAAATTTCATTCGAATTTTTGGAAATCTTTAATAAAAAATGATAAAAATCTACATATTATGCTTCAGACTTGCTAAGATCCCCATTTTTTAAGGTAGATAAAATCTCTCTGTTTAGACGAATTTTAGTGGAAAAGTGGAACTTGTGGACCACCCAATCACCTTCAGTCAGACCTTGCCTGTTTTTTTATACAATTTAGTATACCAGTTTCCCAAAAATACATGTTCTGCTTTTCATATCCATCTGAACCTTTTAAAGGTGGGGGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCTCTTTAACGCGTAGACTTCAATTAAAGGTTCAGTGAAATCAAACAACATATTCATCTGTTTCAACGTATTCATTAGGCCAACATCTCTAATTACCCTAACTCAACCTTATTATTTCATCTATCACCTTCTATCTCTTTGTTTTTTCAAAACAATTCCGTGATTCCATTATCAACTTTTTATATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGTTCGTTTTCTGTAGACAC</pcr_primer_p1>
		<pcr_primer_p2>TCTTAGCAAGTCTGAAGCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGGAAATCTTTAATAAAAAATGATAAAAATCTACATATTATGCTTCAGACTTGCTAAGA</canonical_amplicon>
		<polymorphic_amplicon>AATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGRAAAAAAATTTCATTCGAATTTTTGGAAATCTTTAATAAAAAATGATAAAAATCTACATATTATGCTTCAGACTTGCTAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29720</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>456701</contig_pos>
        <strand></strand>
        <context>CGAATTTTTG[G/A]AAATCTTTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTG</left_flank>
        <right_flank>AAATCTTTAATAAAAAATGATAAAAATCTACATATTATGCTTCAGACTTG</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAAAACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACCGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGGAAATCTTTAATAAAAAATGATAAAAATCTACATATTATGCTTCAGACTTGCTAAGATCCCCATTTTTTAAGGTAGATAAAATCTCTCTGTTTAGACGAATTTTAGTGGAAAAGTGGAACTTGTGGACCACCCAATCACCTTCAGTCAGACCTTGCCTGTTTTTTTATACAATTTAGTATACCAGTTTCCCAAAAATACATGTTCTGCTTTTCATATCCATCTGAACCTTTTAAAGGTGGGGGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCTCTTTAACGCGTAGACTTCAATTAAAGGTTCAGTGAAATCAAACAACATATTCATCTGTTTCAACGTATTCATTAGGCCAACATCTCTAATTACCCTAACTCAACCTTATTATTTCATCTATCACCTTCTATCTCTTTGTTTTTTCAAAACAATTCCGTGATTCCATTATCAACTTTTTATATCACTTTTCCTCGTCCATCTTTATGCCA</canonical>
            <polymorphic>CTGTGGACACATCGTTTTTCCAAACTTTGTTTCAAAGAACTAATATTTCAGAATAAACGAAACTGTCATCGTTTTTTTTTTTGAAAAATTTGAAAAATTAATTTTGAAAAATGAATCATAGATTTACAACGAGAAACAGAAGTACAGTTTTGAGAAAGTGTGAGAAAACAGAAATCCGTTGAGCCGTTGTTGATCCGTCAATGGTCCGTTTTCTTTACACATCAGAAGATAGAGTAGCTGTAAACCCGAATTTCTACGTTAACTCTTCTAATTTCTTTGTTCAACCGTCAACGCTTTTGATCCGCCAATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGRAAATCTTTAATAAAAAATGATAAAAATCTACATATTATGCTTCAGACTTGCTAAGATCCCCATTTTTTAAGGTAGATAAAATCTCTCTGTTTAGACGAATTTTAGTGGAAAAGTGGAACTTGTGGACCACCCAATCACCTTCAGTCAGACCTTGCCTGTTTTTTTATACAATTTAGTATACCAGTTTCCCAAAAATACATGTTCTGCTTTTCATATCCATCTGAACCTTTTAAAGGTGGGGGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCTCTTTAACGCGTAGACTTCAATTAAAGGTTCAGTGAAATCAAACAACATATTCATCTGTTTCAACGTATTCATTAGGCCAACATCTCTAATTACCCTAACTCAACCTTATTATTTCATCTATCACCTTCTATCTCTTTGTTTTTTCAAAACAATTCCGTGATTCCATTATCAACTTTTTATATCACTTTTCCTCGTCCATCTTTATGCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGTTCGTTTTCTGTAGACAC</pcr_primer_p1>
		<pcr_primer_p2>TCTTAGCAAGTCTGAAGCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGGAAATCTTTAATAAAAAATGATAAAAATCTACATATTATGCTTCAGACTTGCTAAGA</canonical_amplicon>
		<polymorphic_amplicon>AATTGTTCGTTTTCTGTAGACACATCGTTTTTCCAATCTTTGTTTCAAAGAATTACTGTTTCAAATTTAGAATAACCGTTGTAGTCATTTGAAAAAGTGATAGTGCTTCAAGAATATATGGAAAGTCAGAAATACAATCTGAAATTGATAAAGATGAATTGAAAGTAGAAAAAAAATTTCATTCGAATTTTTGRAAATCTTTAATAAAAAATGATAAAAATCTACATATTATGCTTCAGACTTGCTAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29721</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>460476</contig_pos>
        <strand></strand>
        <context>GCTCAGATTT[T/C]CCTTGTTTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCATATTTTCTGTAAATTTTGGTCAATTGTTTTTTCTTTGCTCAGATTT</left_flank>
        <right_flank>CCTTGTTTAATGTTTTTGTTACTGTAGATTCGAGACACTTTCCCCGATTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGAAATTGTGGCGCCAACACCAGAACGACAGGCCCAGCTGCGTCAGGAACGCCTGAATCTGTACAATGGAGAGTTCGAAGATACATACCTTCCTTTTAACCATTCAATAAACTATAAGAGTTGGACAGTGAGTTTTCTTATATTTGTTGCCTTTAATGTTTACATTTTTTTCCAGAGACAACAATTCGAAGAGTTTGCGGTTCAATTTTTGCCATTGGAAGTAGTAACGGCTCTTGTGAAAATGAAGGTCGACGGCTCAAAAATGGAAAAGATCAGATGTAATAACAAGCTACTGATGGGACGATTGCATGTTGGATCGAATGGGAAATTTTCTCTGGAGCATTGGAATTTGATTAAAAAATATATTGAGGACATTTGGACGTATAAGAGAGATAAGAAGAAGGAGGAGGAGTTGCGTATTGCCATCTGAATTTGTGTTTTTCCTGTTTCATATTTTCTGTAAATTTTGGTCAATTGTTTTTTCTTTGCTCAGATTTTCCTTGTTTAATGTTTTTGTTACTGTAGATTCGAGACACTTTCCCCGATTCTTATCACTGGAAAAGGCTTAAAAGTCCAAAAAGGCTAGAAAAGTCTAGATTCAGTTTTTTGTTTCCTGTTTCAAAATGTTCTAATCATTTTCTTTTTAATTTTGTAGCATTGATTCTCTTATTCTGTCATGTGCACTTTTTCGCTGTCCCTTTAGGTTCTTGAGAATCTCTTTCATTAGTTTTCTTCCTATTCAAGAAGAAGTCCCCCAAATTACTCTCAGTTTCCAAAACGTGTAATTTCAGAATCCTCATGGATTCCTAAACTTTTTTGTTTCCCTGTTCATTTTTTAAGAGTCCTGTCATTTGTTTTTTCAATTTTCACAATTTTAGTCACCCTTCTCACTGCCTAGTTTTTTGCATAGTTGCAAAATCTCGGGCCGGCCCGGGGTACGTACAGACGTTGATTTTTTGAATTTTTTTCAAACATTTAAACAAAAACGACCTATTTTT</canonical>
            <polymorphic>AATGAAATTGTGGCGCCAACACCAGAACGACAGGCCCAGCTGCGTCAGGAACGCCTGAATCTGTACAATGGAGAGTTCGAAGATACATACCTTCCTTTTAACCATTCAATAAACTATAAGAGTTGGACAGTGAGTTTTCTTATATTTGTTGCCTTTAATGTTTACATTTTTTTCCAGAGACAACAATTCGAAGAGTTTGCGGTTCAATTTTTGCCATTGGAAGTAGTAACGGCTCTTGTGAAAATGAAGGTCGACGGCTCAAAAATGGAAAAGATCAGATGTAATAACAAGCTACTGATGGGACGATTGCATGTTGGATCGAATGGGAAATTTTCTCTGGAGCATTGGAATTTGATTAAAAAATATATTGAGGACATTTGGACGTATAAGAGAGATAAGAAGAAGGAGGAGGAGTTGCGTATTGCCATCTGAATTTGTGTTTTTCCTGTTTCATATTTTCTGTAAATTTTGGTCAATTGTTTTTTCTTTGCTCAGATTTYCCTTGTTTAATGTTTTTGTTACTGTAGATTCGAGACACTTTCCCCGATTCTTATCACTGGAAAAGGCTTAAAAGTCCAAAAAGGCTAGAAAAGTCTAGATTCAGTTTTTTGTTTCCTGTTTCAAAATGTTCTAATCATTTTCTTTTTAATTTTGTAGCATTGATTCTCTTATTCTGTCATGTGCACTTTTTCGCTGTCCCTTTAGGTTCTTGAGAATCTCTTTCATTAGTTTTCTTCCTATTCAAGAAGAAGTCCCCCAAATTACTCTCAGTTTCCAAAACGTGTAATTTCAGAATCCTCATGGATTCCTAAACTTTTTTGTTTCCCTGTTCATTTTTTAAGAGTCCTGTCATTTGTTTTTTCAATTTTCACAATTTTAGTCACCCTTCTCACTGCCTAGTTTTTTGCATAGTTGCAAAATCTCGGGCCGGCCCGGGGTACGTACAGACGTTGATTTTTTGAATTTTTTTCAAACATTTAAACAAAAACGACCTATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGTTTTTCCTGTTTCATATTT</pcr_primer_p1>
		<pcr_primer_p2>GCACATGACAGAATAAGAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTGTTTTTCCTGTTTCATATTTTCTGTAAATTTTGGTCAATTGTTTTTTCTTTGCTCAGATTTTCCTTGTTTAATGTTTTTGTTACTGTAGATTCGAGACACTTTCCCCGATTCTTATCACTGGAAAAGGCTTAAAAGTCCAAAAAGGCTAGAAAAGTCTAGATTCAGTTTTTTGTTTCCTGTTTCAAAATGTTCTAATCATTTTCTTTTTAATTTTGTAGCATTGATTCTCTTATTCTGTCATGTGC</canonical_amplicon>
		<polymorphic_amplicon>TGTGTTTTTCCTGTTTCATATTTTCTGTAAATTTTGGTCAATTGTTTTTTCTTTGCTCAGATTTYCCTTGTTTAATGTTTTTGTTACTGTAGATTCGAGACACTTTCCCCGATTCTTATCACTGGAAAAGGCTTAAAAGTCCAAAAAGGCTAGAAAAGTCTAGATTCAGTTTTTTGTTTCCTGTTTCAAAATGTTCTAATCATTTTCTTTTTAATTTTGTAGCATTGATTCTCTTATTCTGTCATGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29722</snp_id>
        <super_contig>c004801558.Contig11</super_contig>
        <contig_pos>460733</contig_pos>
        <strand></strand>
        <context>AAGAAGTCCC[C/T]CAAATTACTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTTGAGAATCTCTTTCATTAGTTTTCTTCCTATTCAAGAAGAAGTCCC</left_flank>
        <right_flank>CAAATTACTCTCAGTTTCCAAAACGTGTAATTTCAGAATCCTCATGGATT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAAAAATGGAAAAGATCAGATGTAATAACAAGCTACTGATGGGACGATTGCATGTTGGATCGAATGGGAAATTTTCTCTGGAGCATTGGAATTTGATTAAAAAATATATTGAGGACATTTGGACGTATAAGAGAGATAAGAAGAAGGAGGAGGAGTTGCGTATTGCCATCTGAATTTGTGTTTTTCCTGTTTCATATTTTCTGTAAATTTTGGTCAATTGTTTTTTCTTTGCTCAGATTTTCCTTGTTTAATGTTTTTGTTACTGTAGATTCGAGACACTTTCCCCGATTCTTATCACTGGAAAAGGCTTAAAAGTCCAAAAAGGCTAGAAAAGTCTAGATTCAGTTTTTTGTTTCCTGTTTCAAAATGTTCTAATCATTTTCTTTTTAATTTTGTAGCATTGATTCTCTTATTCTGTCATGTGCACTTTTTCGCTGTCCCTTTAGGTTCTTGAGAATCTCTTTCATTAGTTTTCTTCCTATTCAAGAAGAAGTCCCCCAAATTACTCTCAGTTTCCAAAACGTGTAATTTCAGAATCCTCATGGATTCCTAAACTTTTTTGTTTCCCTGTTCATTTTTTAAGAGTCCTGTCATTTGTTTTTTCAATTTTCACAATTTTAGTCACCCTTCTCACTGCCTAGTTTTTTGCATAGTTGCAAAATCTCGGGCCGGCCCGGGGTACGTACAGACGTTGATTTTTTGAATTTTTTTCAAACATTTAAACAAAAACGACCTATTTTTCGACTACTTTCTACTTTGTTAATTTTGTTAAATAATGTAACCTTTTTTCTTTTTTAATTCAAAAAAATTACCCGAACTTTCATTGGAAAAATTTCAACTGTCATACATAGGCGGACCGGGCCAAGATAATTTGTCTACCGGCCCGGCCCGGCCTTTTGCGACTGTATTTTTTTTTGCTAGAAATCATGAGTTTTAAACAGTAAAATGTTCTTGTCTCATTTTGTTTAGAGTTTTTTCACAGTTTCATTTGGTTTTCA</canonical>
            <polymorphic>CTCAAAAATGGAAAAGATCAGATGTAATAACAAGCTACTGATGGGACGATTGCATGTTGGATCGAATGGGAAATTTTCTCTGGAGCATTGGAATTTGATTAAAAAATATATTGAGGACATTTGGACGTATAAGAGAGATAAGAAGAAGGAGGAGGAGTTGCGTATTGCCATCTGAATTTGTGTTTTTCCTGTTTCATATTTTCTGTAAATTTTGGTCAATTGTTTTTTCTTTGCTCAGATTTTCCTTGTTTAATGTTTTTGTTACTGTAGATTCGAGACACTTTCCCCGATTCTTATCACTGGAAAAGGCTTAAAAGTCCAAAAAGGCTAGAAAAGTCTAGATTCAGTTTTTTGTTTCCTGTTTCAAAATGTTCTAATCATTTTCTTTTTAATTTTGTAGCATTGATTCTCTTATTCTGTCATGTGCACTTTTTCGCTGTCCCTTTAGGTTCTTGAGAATCTCTTTCATTAGTTTTCTTCCTATTCAAGAAGAAGTCCCYCAAATTACTCTCAGTTTCCAAAACGTGTAATTTCAGAATCCTCATGGATTCCTAAACTTTTTTGTTTCCCTGTTCATTTTTTAAGAGTCCTGTCATTTGTTTTTTCAATTTTCACAATTTTAGTCACCCTTCTCACTGCCTAGTTTTTTGCATAGTTGCAAAATCTCGGGCCGGCCCGGGGTACGTACAGACGTTGATTTTTTGAATTTTTTTCAAACATTTAAACAAAAACGACCTATTTTTCGACTACTTTCTACTTTGTTAATTTTGTTAAATAATGTAACCTTTTTTCTTTTTTAATTCAAAAAAATTACCCGAACTTTCATTGGAAAAATTTCAACTGTCATACATAGGCGGACCGGGCCAAGATAATTTGTCTACCGGCCCGGCCCGGCCTTTTGCGACTGTATTTTTTTTTGCTAGAAATCATGAGTTTTAAACAGTAAAATGTTCTTGTCTCATTTTGTTTAGAGTTTTTTCACAGTTTCATTTGGTTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTCCTGTTTCAAAATGTTCTA</pcr_primer_p1>
		<pcr_primer_p2>AAACAAATGACAGGACTCTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTTCCTGTTTCAAAATGTTCTAATCATTTTCTTTTTAATTTTGTAGCATTGATTCTCTTATTCTGTCATGTGCACTTTTTCGCTGTCCCTTTAGGTTCTTGAGAATCTCTTTCATTAGTTTTCTTCCTATTCAAGAAGAAGTCCCCCAAATTACTCTCAGTTTCCAAAACGTGTAATTTCAGAATCCTCATGGATTCCTAAACTTTTTTGTTTCCCTGTTCATTTTTTAAGAGTCCTGTCATTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>GTTTCCTGTTTCAAAATGTTCTAATCATTTTCTTTTTAATTTTGTAGCATTGATTCTCTTATTCTGTCATGTGCACTTTTTCGCTGTCCCTTTAGGTTCTTGAGAATCTCTTTCATTAGTTTTCTTCCTATTCAAGAAGAAGTCCCYCAAATTACTCTCAGTTTCCAAAACGTGTAATTTCAGAATCCTCATGGATTCCTAAACTTTTTTGTTTCCCTGTTCATTTTTTAAGAGTCCTGTCATTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29723</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>16665</contig_pos>
        <strand>+</strand>
        <context>CTACGAATGG[A/G]AAGGCCGGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATGAGTATGTGTTTGATAGAGAGTGCAGAGAAGTTATTCTACGAATGG</left_flank>
        <right_flank>AAGGCCGGATCGATGTCCTAGAGGCTGTGATCGACGAGCCAGAAAAGAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATATTTTAAGTATAACACAAAAAAATTCATGCTTCGAAACGTCCTAGGACTTGAGAAAATCGTCTTTGAAAACCCGGATATTGCACTGAAAGGCGATTTTTGGTACTGAAACTGATAAATCTCGGCTGAAACTGGCGGGCAGATTCCAAAATTTTCAGAGATGTCTAGATTTCTAACCTATCCCGAAATTTTCACCTAAATATAGGTTTGTTAGGTGTTGAGGTTCCTTGTGAAGGAATAGGCCTGACCAGCAGCTTTCTAGAGATTCTTTGATCTCTAATCATAACTGAGATATCCATGTACTAATCGATTGAACATAGATTAACGCGTGATTAGAGGACCATAACTTGCGGTGTCCGCCGGTTGATGGGCAGCTGTTGTGCCGCGCTAGTCGACACCTCAATGTTATGATTCACGAGAAAGCGAACACTGGTGTTGCGGTTCCATGTAATGAGTATGTGTTTGATAGAGAGTGCAGAGAAGTTATTCTACGAATGGGAAGGCCGGATCGATGTCCTAGAGGCTGTGATCGACGAGCCAGAAAAGAAAAGCTGGTAAGGGTGGAAGAATAAAATCGAAACTTTAGATCCATCAGATGTATCAAAAAGGAATCAACTTAAAATCATGCTCAAATCGCCTTCGTTGGGTATTTCCAAAAAAGTCAGCGATTTACCTATTGGATATGTCTGACAGTGAGAGTAAAGTTTTTCCAAAATAGCCAATTATTATGTCTAGAATAAGCTCTTATAAGGTCTTAAAGAAAAATTAGGAGGTATGGCCAAAAAAGCAGAAAACAAAACATTCTGGGCCTAAAAGGGAGTACTGTATTTGAGATCTGAAAAATCAAGATGTCCCTCAATTTCATTATTGTATTGTATTATGTTGTATTGTATTTCTTACGTAAAAAATTATCTGAGAAAATATGAGAAGGAGAACTTGTAAATACAAGCAAAACCGAGTATCGTATATAAGAGAGGTCATACGCATACATCTGCCTAT</canonical>
            <polymorphic>TATATTTTAAGTATAACACAAAAAAATTCATGCTTCGAAACGTCCTAGGACTTGAGAAAATCGTCTTTGAAAACCCGGATATTGCACTGAAAGGCGATTTTTGGTACTGAAACTGATAAATCTCGGCTGAAACTGGCGGGCAGATTCCAAAATTTTCAGAGATGTCTAGATTTCTAACCTATCCCGAAATTTTCACCTAAATATAGGTTTGTTAGGTGTTGAGGTTCCTTGTGAAGGAATAGGCCTGACCAGCAGCTTTCTAGAGATTCTTTGATCTCTAATCATAACTGAGATATCCATGTACTAATCGATTGAACATAGATTAACGCGTGATTAGAGGACCATAACTTGCGGTGTCCGCCGGTTGATGGGCAGCTGTTGTGCCGCGCTAGTCGACACCTCAATGTTATGATTCACGAGAAAGCGAACACTGGTGTTGCGGTTCCATGTAATGAGTATGTGTTTGATAGAGAGTGCAGAGAAGTTATTCTACGAATGGRAAGGCCGGATCGATGTCCTAGAGGCTGTGATCGACGAGCCAGAAAAGAAAAGCTGGTAAGGGTGGAAGAATAAAATCGAAACTTTAGATCCATCAGATGTATCAAAAAGGAATCAACTTAAAATCATGCTCAAATCGCCTTCGTTGGGTATTTCCAAAAAAGTCAGCGATTTACCTATTGGATATGTCTGACAGTGAGAGTAAAGTTTTTCCAAAATAGCCAATTATTATGTCTAGAATAAGCTCTTATAAGGTCTTAAAGAAAAATTAGGAGGTATGGCCAAAAAAGCAGAAAACAAAACATTCTGGGCCTAAAAGGGAGTACTGTATTTGAGATCTGAAAAATCAAGATGTCCCTCAATTTCATTATTGTATTGTATTATGTTGTATTGTATTTCTTACGTAAAAAATTATCTGAGAAAATATGAGAAGGAGAACTTGTAAATACAAGCAAAACCGAGTATCGTATATAAGAGAGGTCATACGCATACATCTGCCTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTCGACACCTCAATGTTATG</pcr_primer_p1>
		<pcr_primer_p2>TTGAGCATGATTTTAAGTTGATT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TAGTCGACACCTCAATGTTATGATTCACGAGAAAGCGAACACTGGTGTTGCGGTTCCATGTAATGAGTATGTGTTTGATAGAGAGTGCAGAGAAGTTATTCTACGAATGGGAAGGCCGGATCGATGTCCTAGAGGCTGTGATCGACGAGCCAGAAAAGAAAAGCTGGTAAGGGTGGAAGAATAAAATCGAAACTTTAGATCCATCAGATGTATCAAAAAGGAATCAACTTAAAATCATGCTCAA</canonical_amplicon>
		<polymorphic_amplicon>TAGTCGACACCTCAATGTTATGATTCACGAGAAAGCGAACACTGGTGTTGCGGTTCCATGTAATGAGTATGTGTTTGATAGAGAGTGCAGAGAAGTTATTCTACGAATGGRAAGGCCGGATCGATGTCCTAGAGGCTGTGATCGACGAGCCAGAAAAGAAAAGCTGGTAAGGGTGGAAGAATAAAATCGAAACTTTAGATCCATCAGATGTATCAAAAAGGAATCAACTTAAAATCATGCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29724</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>16715</contig_pos>
        <strand>+</strand>
        <context>CAGAAAAGAA[A/C]AGCTGGTAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAGGCCGGATCGATGTCCTAGAGGCTGTGATCGACGAGCCAGAAAAGAA</left_flank>
        <right_flank>AGCTGGTAAGGGTGGAAGAATAAAATCGAAACTTTAGATCCATCAGATGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGAGAAAATCGTCTTTGAAAACCCGGATATTGCACTGAAAGGCGATTTTTGGTACTGAAACTGATAAATCTCGGCTGAAACTGGCGGGCAGATTCCAAAATTTTCAGAGATGTCTAGATTTCTAACCTATCCCGAAATTTTCACCTAAATATAGGTTTGTTAGGTGTTGAGGTTCCTTGTGAAGGAATAGGCCTGACCAGCAGCTTTCTAGAGATTCTTTGATCTCTAATCATAACTGAGATATCCATGTACTAATCGATTGAACATAGATTAACGCGTGATTAGAGGACCATAACTTGCGGTGTCCGCCGGTTGATGGGCAGCTGTTGTGCCGCGCTAGTCGACACCTCAATGTTATGATTCACGAGAAAGCGAACACTGGTGTTGCGGTTCCATGTAATGAGTATGTGTTTGATAGAGAGTGCAGAGAAGTTATTCTACGAATGGGAAGGCCGGATCGATGTCCTAGAGGCTGTGATCGACGAGCCAGAAAAGAAAAGCTGGTAAGGGTGGAAGAATAAAATCGAAACTTTAGATCCATCAGATGTATCAAAAAGGAATCAACTTAAAATCATGCTCAAATCGCCTTCGTTGGGTATTTCCAAAAAAGTCAGCGATTTACCTATTGGATATGTCTGACAGTGAGAGTAAAGTTTTTCCAAAATAGCCAATTATTATGTCTAGAATAAGCTCTTATAAGGTCTTAAAGAAAAATTAGGAGGTATGGCCAAAAAAGCAGAAAACAAAACATTCTGGGCCTAAAAGGGAGTACTGTATTTGAGATCTGAAAAATCAAGATGTCCCTCAATTTCATTATTGTATTGTATTATGTTGTATTGTATTTCTTACGTAAAAAATTATCTGAGAAAATATGAGAAGGAGAACTTGTAAATACAAGCAAAACCGAGTATCGTATATAAGAGAGGTCATACGCATACATCTGCCTATAACCTTCACCCTAGGCCTTGTGGCAACCATCTCACTTTGAGAAGTGCTTG</canonical>
            <polymorphic>CTTGAGAAAATCGTCTTTGAAAACCCGGATATTGCACTGAAAGGCGATTTTTGGTACTGAAACTGATAAATCTCGGCTGAAACTGGCGGGCAGATTCCAAAATTTTCAGAGATGTCTAGATTTCTAACCTATCCCGAAATTTTCACCTAAATATAGGTTTGTTAGGTGTTGAGGTTCCTTGTGAAGGAATAGGCCTGACCAGCAGCTTTCTAGAGATTCTTTGATCTCTAATCATAACTGAGATATCCATGTACTAATCGATTGAACATAGATTAACGCGTGATTAGAGGACCATAACTTGCGGTGTCCGCCGGTTGATGGGCAGCTGTTGTGCCGCGCTAGTCGACACCTCAATGTTATGATTCACGAGAAAGCGAACACTGGTGTTGCGGTTCCATGTAATGAGTATGTGTTTGATAGAGAGTGCAGAGAAGTTATTCTACGAATGGGAAGGCCGGATCGATGTCCTAGAGGCTGTGATCGACGAGCCAGAAAAGAAMAGCTGGTAAGGGTGGAAGAATAAAATCGAAACTTTAGATCCATCAGATGTATCAAAAAGGAATCAACTTAAAATCATGCTCAAATCGCCTTCGTTGGGTATTTCCAAAAAAGTCAGCGATTTACCTATTGGATATGTCTGACAGTGAGAGTAAAGTTTTTCCAAAATAGCCAATTATTATGTCTAGAATAAGCTCTTATAAGGTCTTAAAGAAAAATTAGGAGGTATGGCCAAAAAAGCAGAAAACAAAACATTCTGGGCCTAAAAGGGAGTACTGTATTTGAGATCTGAAAAATCAAGATGTCCCTCAATTTCATTATTGTATTGTATTATGTTGTATTGTATTTCTTACGTAAAAAATTATCTGAGAAAATATGAGAAGGAGAACTTGTAAATACAAGCAAAACCGAGTATCGTATATAAGAGAGGTCATACGCATACATCTGCCTATAACCTTCACCCTAGGCCTTGTGGCAACCATCTCACTTTGAGAAGTGCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTGCAGAGAAGTTATTCTACG</pcr_primer_p1>
		<pcr_primer_p2>TGGCTATTTTGGAAAAACTTTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAGTGCAGAGAAGTTATTCTACGAATGGGAAGGCCGGATCGATGTCCTAGAGGCTGTGATCGACGAGCCAGAAAAGAAAAGCTGGTAAGGGTGGAAGAATAAAATCGAAACTTTAGATCCATCAGATGTATCAAAAAGGAATCAACTTAAAATCATGCTCAAATCGCCTTCGTTGGGTATTTCCAAAAAAGTCAGCGATTTACCTATTGGATATGTCTGACAGTGAGAGTAAAGTTTTTCCAAAATAGCCA</canonical_amplicon>
		<polymorphic_amplicon>GAGTGCAGAGAAGTTATTCTACGAATGGGAAGGCCGGATCGATGTCCTAGAGGCTGTGATCGACGAGCCAGAAAAGAAMAGCTGGTAAGGGTGGAAGAATAAAATCGAAACTTTAGATCCATCAGATGTATCAAAAAGGAATCAACTTAAAATCATGCTCAAATCGCCTTCGTTGGGTATTTCCAAAAAAGTCAGCGATTTACCTATTGGATATGTCTGACAGTGAGAGTAAAGTTTTTCCAAAATAGCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29725</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>16730</contig_pos>
        <strand>+</strand>
        <context>GGTAAGGGTG[A/G]AAGAATAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCCTAGAGGCTGTGATCGACGAGCCAGAAAAGAAAAGCTGGTAAGGGTG</left_flank>
        <right_flank>AAGAATAAAATCGAAACTTTAGATCCATCAGATGTATCAAAAAGGAATCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAAAACCCGGATATTGCACTGAAAGGCGATTTTTGGTACTGAAACTGATAAATCTCGGCTGAAACTGGCGGGCAGATTCCAAAATTTTCAGAGATGTCTAGATTTCTAACCTATCCCGAAATTTTCACCTAAATATAGGTTTGTTAGGTGTTGAGGTTCCTTGTGAAGGAATAGGCCTGACCAGCAGCTTTCTAGAGATTCTTTGATCTCTAATCATAACTGAGATATCCATGTACTAATCGATTGAACATAGATTAACGCGTGATTAGAGGACCATAACTTGCGGTGTCCGCCGGTTGATGGGCAGCTGTTGTGCCGCGCTAGTCGACACCTCAATGTTATGATTCACGAGAAAGCGAACACTGGTGTTGCGGTTCCATGTAATGAGTATGTGTTTGATAGAGAGTGCAGAGAAGTTATTCTACGAATGGGAAGGCCGGATCGATGTCCTAGAGGCTGTGATCGACGAGCCAGAAAAGAAAAGCTGGTAAGGGTGGAAGAATAAAATCGAAACTTTAGATCCATCAGATGTATCAAAAAGGAATCAACTTAAAATCATGCTCAAATCGCCTTCGTTGGGTATTTCCAAAAAAGTCAGCGATTTACCTATTGGATATGTCTGACAGTGAGAGTAAAGTTTTTCCAAAATAGCCAATTATTATGTCTAGAATAAGCTCTTATAAGGTCTTAAAGAAAAATTAGGAGGTATGGCCAAAAAAGCAGAAAACAAAACATTCTGGGCCTAAAAGGGAGTACTGTATTTGAGATCTGAAAAATCAAGATGTCCCTCAATTTCATTATTGTATTGTATTATGTTGTATTGTATTTCTTACGTAAAAAATTATCTGAGAAAATATGAGAAGGAGAACTTGTAAATACAAGCAAAACCGAGTATCGTATATAAGAGAGGTCATACGCATACATCTGCCTATAACCTTCACCCTAGGCCTTGTGGCAACCATCTCACTTTGAGAAGTGCTTGAAAACTATTGTGATT</canonical>
            <polymorphic>TTTGAAAACCCGGATATTGCACTGAAAGGCGATTTTTGGTACTGAAACTGATAAATCTCGGCTGAAACTGGCGGGCAGATTCCAAAATTTTCAGAGATGTCTAGATTTCTAACCTATCCCGAAATTTTCACCTAAATATAGGTTTGTTAGGTGTTGAGGTTCCTTGTGAAGGAATAGGCCTGACCAGCAGCTTTCTAGAGATTCTTTGATCTCTAATCATAACTGAGATATCCATGTACTAATCGATTGAACATAGATTAACGCGTGATTAGAGGACCATAACTTGCGGTGTCCGCCGGTTGATGGGCAGCTGTTGTGCCGCGCTAGTCGACACCTCAATGTTATGATTCACGAGAAAGCGAACACTGGTGTTGCGGTTCCATGTAATGAGTATGTGTTTGATAGAGAGTGCAGAGAAGTTATTCTACGAATGGGAAGGCCGGATCGATGTCCTAGAGGCTGTGATCGACGAGCCAGAAAAGAAAAGCTGGTAAGGGTGRAAGAATAAAATCGAAACTTTAGATCCATCAGATGTATCAAAAAGGAATCAACTTAAAATCATGCTCAAATCGCCTTCGTTGGGTATTTCCAAAAAAGTCAGCGATTTACCTATTGGATATGTCTGACAGTGAGAGTAAAGTTTTTCCAAAATAGCCAATTATTATGTCTAGAATAAGCTCTTATAAGGTCTTAAAGAAAAATTAGGAGGTATGGCCAAAAAAGCAGAAAACAAAACATTCTGGGCCTAAAAGGGAGTACTGTATTTGAGATCTGAAAAATCAAGATGTCCCTCAATTTCATTATTGTATTGTATTATGTTGTATTGTATTTCTTACGTAAAAAATTATCTGAGAAAATATGAGAAGGAGAACTTGTAAATACAAGCAAAACCGAGTATCGTATATAAGAGAGGTCATACGCATACATCTGCCTATAACCTTCACCCTAGGCCTTGTGGCAACCATCTCACTTTGAGAAGTGCTTGAAAACTATTGTGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTGCAGAGAAGTTATTCTACG</pcr_primer_p1>
		<pcr_primer_p2>TGGCTATTTTGGAAAAACTTTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAGTGCAGAGAAGTTATTCTACGAATGGGAAGGCCGGATCGATGTCCTAGAGGCTGTGATCGACGAGCCAGAAAAGAAAAGCTGGTAAGGGTGGAAGAATAAAATCGAAACTTTAGATCCATCAGATGTATCAAAAAGGAATCAACTTAAAATCATGCTCAAATCGCCTTCGTTGGGTATTTCCAAAAAAGTCAGCGATTTACCTATTGGATATGTCTGACAGTGAGAGTAAAGTTTTTCCAAAATAGCCA</canonical_amplicon>
		<polymorphic_amplicon>GAGTGCAGAGAAGTTATTCTACGAATGGGAAGGCCGGATCGATGTCCTAGAGGCTGTGATCGACGAGCCAGAAAAGAAAAGCTGGTAAGGGTGRAAGAATAAAATCGAAACTTTAGATCCATCAGATGTATCAAAAAGGAATCAACTTAAAATCATGCTCAAATCGCCTTCGTTGGGTATTTCCAAAAAAGTCAGCGATTTACCTATTGGATATGTCTGACAGTGAGAGTAAAGTTTTTCCAAAATAGCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29726</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>16841</contig_pos>
        <strand>+</strand>
        <context>GCGATTTACC[C/T]ATTGGATATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGCTCAAATCGCCTTCGTTGGGTATTTCCAAAAAAGTCAGCGATTTACC</left_flank>
        <right_flank>ATTGGATATGTCTGACAGTGAGAGTAAAGTTTTTCCAAAATAGCCAATTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTATCCCGAAATTTTCACCTAAATATAGGTTTGTTAGGTGTTGAGGTTCCTTGTGAAGGAATAGGCCTGACCAGCAGCTTTCTAGAGATTCTTTGATCTCTAATCATAACTGAGATATCCATGTACTAATCGATTGAACATAGATTAACGCGTGATTAGAGGACCATAACTTGCGGTGTCCGCCGGTTGATGGGCAGCTGTTGTGCCGCGCTAGTCGACACCTCAATGTTATGATTCACGAGAAAGCGAACACTGGTGTTGCGGTTCCATGTAATGAGTATGTGTTTGATAGAGAGTGCAGAGAAGTTATTCTACGAATGGGAAGGCCGGATCGATGTCCTAGAGGCTGTGATCGACGAGCCAGAAAAGAAAAGCTGGTAAGGGTGGAAGAATAAAATCGAAACTTTAGATCCATCAGATGTATCAAAAAGGAATCAACTTAAAATCATGCTCAAATCGCCTTCGTTGGGTATTTCCAAAAAAGTCAGCGATTTACCTATTGGATATGTCTGACAGTGAGAGTAAAGTTTTTCCAAAATAGCCAATTATTATGTCTAGAATAAGCTCTTATAAGGTCTTAAAGAAAAATTAGGAGGTATGGCCAAAAAAGCAGAAAACAAAACATTCTGGGCCTAAAAGGGAGTACTGTATTTGAGATCTGAAAAATCAAGATGTCCCTCAATTTCATTATTGTATTGTATTATGTTGTATTGTATTTCTTACGTAAAAAATTATCTGAGAAAATATGAGAAGGAGAACTTGTAAATACAAGCAAAACCGAGTATCGTATATAAGAGAGGTCATACGCATACATCTGCCTATAACCTTCACCCTAGGCCTTGTGGCAACCATCTCACTTTGAGAAGTGCTTGAAAACTATTGTGATTAAACTGGGAATTTTGTAAGGCAAAAAACGCAAATTAAAATAAGATTGAAAAAAAACCTTTTTCGACAAAATTTAGGCCCAAACACTGTATTTCAGGCCTAAAAATATTTCT</canonical>
            <polymorphic>ACCTATCCCGAAATTTTCACCTAAATATAGGTTTGTTAGGTGTTGAGGTTCCTTGTGAAGGAATAGGCCTGACCAGCAGCTTTCTAGAGATTCTTTGATCTCTAATCATAACTGAGATATCCATGTACTAATCGATTGAACATAGATTAACGCGTGATTAGAGGACCATAACTTGCGGTGTCCGCCGGTTGATGGGCAGCTGTTGTGCCGCGCTAGTCGACACCTCAATGTTATGATTCACGAGAAAGCGAACACTGGTGTTGCGGTTCCATGTAATGAGTATGTGTTTGATAGAGAGTGCAGAGAAGTTATTCTACGAATGGGAAGGCCGGATCGATGTCCTAGAGGCTGTGATCGACGAGCCAGAAAAGAAAAGCTGGTAAGGGTGGAAGAATAAAATCGAAACTTTAGATCCATCAGATGTATCAAAAAGGAATCAACTTAAAATCATGCTCAAATCGCCTTCGTTGGGTATTTCCAAAAAAGTCAGCGATTTACCYATTGGATATGTCTGACAGTGAGAGTAAAGTTTTTCCAAAATAGCCAATTATTATGTCTAGAATAAGCTCTTATAAGGTCTTAAAGAAAAATTAGGAGGTATGGCCAAAAAAGCAGAAAACAAAACATTCTGGGCCTAAAAGGGAGTACTGTATTTGAGATCTGAAAAATCAAGATGTCCCTCAATTTCATTATTGTATTGTATTATGTTGTATTGTATTTCTTACGTAAAAAATTATCTGAGAAAATATGAGAAGGAGAACTTGTAAATACAAGCAAAACCGAGTATCGTATATAAGAGAGGTCATACGCATACATCTGCCTATAACCTTCACCCTAGGCCTTGTGGCAACCATCTCACTTTGAGAAGTGCTTGAAAACTATTGTGATTAAACTGGGAATTTTGTAAGGCAAAAAACGCAAATTAAAATAAGATTGAAAAAAAACCTTTTTCGACAAAATTTAGGCCCAAACACTGTATTTCAGGCCTAAAAATATTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAACTTAAAATCATGCTCAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGAGGGACATCTTGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCAACTTAAAATCATGCTCAAATCGCCTTCGTTGGGTATTTCCAAAAAAGTCAGCGATTTACCTATTGGATATGTCTGACAGTGAGAGTAAAGTTTTTCCAAAATAGCCAATTATTATGTCTAGAATAAGCTCTTATAAGGTCTTAAAGAAAAATTAGGAGGTATGGCCAAAAAAGCAGAAAACAAAACATTCTGGGCCTAAAAGGGAGTACTGTATTTGAGATCTGAAAAATCAAGATGTCCCTCAAT</canonical_amplicon>
		<polymorphic_amplicon>ATCAACTTAAAATCATGCTCAAATCGCCTTCGTTGGGTATTTCCAAAAAAGTCAGCGATTTACCYATTGGATATGTCTGACAGTGAGAGTAAAGTTTTTCCAAAATAGCCAATTATTATGTCTAGAATAAGCTCTTATAAGGTCTTAAAGAAAAATTAGGAGGTATGGCCAAAAAAGCAGAAAACAAAACATTCTGGGCCTAAAAGGGAGTACTGTATTTGAGATCTGAAAAATCAAGATGTCCCTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29727</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>17048</contig_pos>
        <strand></strand>
        <context>attgtattat[G/A]ttgtattgta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGATCTGAAAAATCAAGATGTCCCTCAATTTCATTATTGTATTGTATTAT</left_flank>
        <right_flank>TTGTATTGTATTTCTTACGTAAAAAATTATCTGAGAAAATATGAGAAGGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGCGCTAGTCGACACCTCAATGTTATGATTCACGAGAAAGCGAACACTGGTGTTGCGGTTCCATGTAATGAGTATGTGTTTGATAGAGAGTGCAGAGAAGTTATTCTACGAATGGGAAGGCCGGATCGATGTCCTAGAGGCTGTGATCGACGAGCCAGAAAAGAAAAGCTGGTAAGGGTGGAAGAATAAAATCGAAACTTTAGATCCATCAGATGTATCAAAAAGGAATCAACTTAAAATCATGCTCAAATCGCCTTCGTTGGGTATTTCCAAAAAAGTCAGCGATTTACCTATTGGATATGTCTGACAGTGAGAGTAAAGTTTTTCCAAAATAGCCAATTATTATGTCTAGAATAAGCTCTTATAAGGTCTTAAAGAAAAATTAGGAGGTATGGCCAAAAAAGCAGAAAACAAAACATTCTGGGCCTAAAAGGGAGTACTGTATTTGAGATCTGAAAAATCAAGATGTCCCTCAATTTCATTATTGTATTGTATTATGTTGTATTGTATTTCTTACGTAAAAAATTATCTGAGAAAATATGAGAAGGAGAACTTGTAAATACAAGCAAAACCGAGTATCGTATATAAGAGAGGTCATACGCATACATCTGCCTATAACCTTCACCCTAGGCCTTGTGGCAACCATCTCACTTTGAGAAGTGCTTGAAAACTATTGTGATTAAACTGGGAATTTTGTAAGGCAAAAAACGCAAATTAAAATAAGATTGAAAAAAAACCTTTTTCGACAAAATTTAGGCCCAAACACTGTATTTCAGGCCTAAAAATATTTCTGAGAACCAGTATGCTTCTTACAGATATTTCTGAAAATCTAATGATGTGACTCGAGACTGCGATGGCTAAAACAAAACACGGAAAAAGGAACTAAAAGATTTTGGGCCTAAGAGAGGGGGGACAAAGGAGAACCATTCAAAAAACAAGCAACACTGCGTCTCGTGCACAGAAGAGGTCATATGCATCTGGTTCCATGTCTGGCGCCAA</canonical>
            <polymorphic>CCGCGCTAGTCGACACCTCAATGTTATGATTCACGAGAAAGCGAACACTGGTGTTGCGGTTCCATGTAATGAGTATGTGTTTGATAGAGAGTGCAGAGAAGTTATTCTACGAATGGGAAGGCCGGATCGATGTCCTAGAGGCTGTGATCGACGAGCCAGAAAAGAAAAGCTGGTAAGGGTGGAAGAATAAAATCGAAACTTTAGATCCATCAGATGTATCAAAAAGGAATCAACTTAAAATCATGCTCAAATCGCCTTCGTTGGGTATTTCCAAAAAAGTCAGCGATTTACCTATTGGATATGTCTGACAGTGAGAGTAAAGTTTTTCCAAAATAGCCAATTATTATGTCTAGAATAAGCTCTTATAAGGTCTTAAAGAAAAATTAGGAGGTATGGCCAAAAAAGCAGAAAACAAAACATTCTGGGCCTAAAAGGGAGTACTGTATTTGAGATCTGAAAAATCAAGATGTCCCTCAATTTCATTATTGTATTGTATTATRTTGTATTGTATTTCTTACGTAAAAAATTATCTGAGAAAATATGAGAAGGAGAACTTGTAAATACAAGCAAAACCGAGTATCGTATATAAGAGAGGTCATACGCATACATCTGCCTATAACCTTCACCCTAGGCCTTGTGGCAACCATCTCACTTTGAGAAGTGCTTGAAAACTATTGTGATTAAACTGGGAATTTTGTAAGGCAAAAAACGCAAATTAAAATAAGATTGAAAAAAAACCTTTTTCGACAAAATTTAGGCCCAAACACTGTATTTCAGGCCTAAAAATATTTCTGAGAACCAGTATGCTTCTTACAGATATTTCTGAAAATCTAATGATGTGACTCGAGACTGCGATGGCTAAAACAAAACACGGAAAAAGGAACTAAAAGATTTTGGGCCTAAGAGAGGGGGGACAAAGGAGAACCATTCAAAAAACAAGCAACACTGCGTCTCGTGCACAGAAGAGGTCATATGCATCTGGTTCCATGTCTGGCGCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGATCTGAAAAATCAAGATG</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCCCAGTTTAATCACAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGAGATCTGAAAAATCAAGATGTCCCTCAATTTCATTATTGTATTGTATTATGTTGTATTGTATTTCTTACGTAAAAAATTATCTGAGAAAATATGAGAAGGAGAACTTGTAAATACAAGCAAAACCGAGTATCGTATATAAGAGAGGTCATACGCATACATCTGCCTATAACCTTCACCCTAGGCCTTGTGGCAACCATCTCACTTTGAGAAGTGCTTGAAAACTATTGTGATTAAACTGGGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGAGATCTGAAAAATCAAGATGTCCCTCAATTTCATTATTGTATTGTATTATRTTGTATTGTATTTCTTACGTAAAAAATTATCTGAGAAAATATGAGAAGGAGAACTTGTAAATACAAGCAAAACCGAGTATCGTATATAAGAGAGGTCATACGCATACATCTGCCTATAACCTTCACCCTAGGCCTTGTGGCAACCATCTCACTTTGAGAAGTGCTTGAAAACTATTGTGATTAAACTGGGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29728</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>17080</contig_pos>
        <strand>+</strand>
        <context>AAAAATTATC[C/T]GAGAAAATAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTATTGTATTGTATTATGTTGTATTGTATTTCTTACGTAAAAAATTATC</left_flank>
        <right_flank>GAGAAAATATGAGAAGGAGAACTTGTAAATACAAGCAAAACCGAGTATCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGAGAAAGCGAACACTGGTGTTGCGGTTCCATGTAATGAGTATGTGTTTGATAGAGAGTGCAGAGAAGTTATTCTACGAATGGGAAGGCCGGATCGATGTCCTAGAGGCTGTGATCGACGAGCCAGAAAAGAAAAGCTGGTAAGGGTGGAAGAATAAAATCGAAACTTTAGATCCATCAGATGTATCAAAAAGGAATCAACTTAAAATCATGCTCAAATCGCCTTCGTTGGGTATTTCCAAAAAAGTCAGCGATTTACCTATTGGATATGTCTGACAGTGAGAGTAAAGTTTTTCCAAAATAGCCAATTATTATGTCTAGAATAAGCTCTTATAAGGTCTTAAAGAAAAATTAGGAGGTATGGCCAAAAAAGCAGAAAACAAAACATTCTGGGCCTAAAAGGGAGTACTGTATTTGAGATCTGAAAAATCAAGATGTCCCTCAATTTCATTATTGTATTGTATTATGTTGTATTGTATTTCTTACGTAAAAAATTATCTGAGAAAATATGAGAAGGAGAACTTGTAAATACAAGCAAAACCGAGTATCGTATATAAGAGAGGTCATACGCATACATCTGCCTATAACCTTCACCCTAGGCCTTGTGGCAACCATCTCACTTTGAGAAGTGCTTGAAAACTATTGTGATTAAACTGGGAATTTTGTAAGGCAAAAAACGCAAATTAAAATAAGATTGAAAAAAAACCTTTTTCGACAAAATTTAGGCCCAAACACTGTATTTCAGGCCTAAAAATATTTCTGAGAACCAGTATGCTTCTTACAGATATTTCTGAAAATCTAATGATGTGACTCGAGACTGCGATGGCTAAAACAAAACACGGAAAAAGGAACTAAAAGATTTTGGGCCTAAGAGAGGGGGGACAAAGGAGAACCATTCAAAAAACAAGCAACACTGCGTCTCGTGCACAGAAGAGGTCATATGCATCTGGTTCCATGTCTGGCGCCAAATTCAAATGTTGATCGTAAGGGTTTTGGCTTG</canonical>
            <polymorphic>ACGAGAAAGCGAACACTGGTGTTGCGGTTCCATGTAATGAGTATGTGTTTGATAGAGAGTGCAGAGAAGTTATTCTACGAATGGGAAGGCCGGATCGATGTCCTAGAGGCTGTGATCGACGAGCCAGAAAAGAAAAGCTGGTAAGGGTGGAAGAATAAAATCGAAACTTTAGATCCATCAGATGTATCAAAAAGGAATCAACTTAAAATCATGCTCAAATCGCCTTCGTTGGGTATTTCCAAAAAAGTCAGCGATTTACCTATTGGATATGTCTGACAGTGAGAGTAAAGTTTTTCCAAAATAGCCAATTATTATGTCTAGAATAAGCTCTTATAAGGTCTTAAAGAAAAATTAGGAGGTATGGCCAAAAAAGCAGAAAACAAAACATTCTGGGCCTAAAAGGGAGTACTGTATTTGAGATCTGAAAAATCAAGATGTCCCTCAATTTCATTATTGTATTGTATTATGTTGTATTGTATTTCTTACGTAAAAAATTATCYGAGAAAATATGAGAAGGAGAACTTGTAAATACAAGCAAAACCGAGTATCGTATATAAGAGAGGTCATACGCATACATCTGCCTATAACCTTCACCCTAGGCCTTGTGGCAACCATCTCACTTTGAGAAGTGCTTGAAAACTATTGTGATTAAACTGGGAATTTTGTAAGGCAAAAAACGCAAATTAAAATAAGATTGAAAAAAAACCTTTTTCGACAAAATTTAGGCCCAAACACTGTATTTCAGGCCTAAAAATATTTCTGAGAACCAGTATGCTTCTTACAGATATTTCTGAAAATCTAATGATGTGACTCGAGACTGCGATGGCTAAAACAAAACACGGAAAAAGGAACTAAAAGATTTTGGGCCTAAGAGAGGGGGGACAAAGGAGAACCATTCAAAAAACAAGCAACACTGCGTCTCGTGCACAGAAGAGGTCATATGCATCTGGTTCCATGTCTGGCGCCAAATTCAAATGTTGATCGTAAGGGTTTTGGCTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>499 261 132 108</canonical_bands>
                <polymorphic_bands>760 132 108</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCTGAAAAATCAAGATGTCC</pcr_primer_p1>
		<pcr_primer_p2>TTACAAAATTCCCAGTTTAATCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCTGAAAAATCAAGATGTCCCTCAATTTCATTATTGTATTGTATTATGTTGTATTGTATTTCTTACGTAAAAAATTATCTGAGAAAATATGAGAAGGAGAACTTGTAAATACAAGCAAAACCGAGTATCGTATATAAGAGAGGTCATACGCATACATCTGCCTATAACCTTCACCCTAGGCCTTGTGGCAACCATCTCACTTTGAGAAGTGCTTGAAAACTATTGTGATTAAACTGGGAATTTTGTAA</canonical_amplicon>
		<polymorphic_amplicon>GATCTGAAAAATCAAGATGTCCCTCAATTTCATTATTGTATTGTATTATGTTGTATTGTATTTCTTACGTAAAAAATTATCYGAGAAAATATGAGAAGGAGAACTTGTAAATACAAGCAAAACCGAGTATCGTATATAAGAGAGGTCATACGCATACATCTGCCTATAACCTTCACCCTAGGCCTTGTGGCAACCATCTCACTTTGAGAAGTGCTTGAAAACTATTGTGATTAAACTGGGAATTTTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29729</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>18320</contig_pos>
        <strand>+</strand>
        <context>AATGACTCTA[A/G]CCGAAAAGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGCAATCAAGAGACAAATAATCAGAAACCTGAGAAGAAAATGACTCTA</left_flank>
        <right_flank>CCGAAAAGGGTGTCTGCTCTTTCAACTAGAGCTATGTTAAACAATGATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCTTCTCAACTATGGTTACGGTAGATTTCGCAATTTTATCGTTTTTGATTTCGGCTATTTTGAGTAGCATATCGATATTTCATCTTATTTCTTAACTGTTTCTTATTTTCATTTTTTCAGATTCTCCTTCGAATAGGAGTTTTTTGACGACAATTTGTTCCTTGTGTAGTGAAGGTGCACGGTGTATTGCGGATTGCGTGTGTGGATTTACGGAGCAATATTTAGATTTTCGAAAACCCTATTTTTGGCTGAAAAACTTTTTAGTGAGCGAGAAAAAGCTTGAATAAGCGGAAATTAGTTTTGCAAAATTTTTCAGAAACATTTCCGTTCGTTTGGAAGCAATACAATGGAAGATAATTGTCCAATCGAGGCATTTAGAAAATTCGGAGGAGAATTTCGAAAATTATCGGAACATTTATCAAGTACGCGACGTCGTGGAGCACTTCGGAAGCAATCAAGAGACAAATAATCAGAAACCTGAGAAGAAAATGACTCTATCCGAAAAGGGTGTCTGCTCTTTCAACTAGAGCTATGTTAAACAATGATAAAGGCTCGAAAAAATGAATCAATATTTATTCAGACAATATGCTTATTTTAATTCCTGAAACTGATGAAAATCCATATAAAAAAGATAGGGACACTGGAAATAGGCTTCTTTTATTTCCATTGTGACGGAGAAAAAGTTTCAGATGTAGTTTCGTCAGTCAACAAGCGCTTTCACGCCTTTGTTAAGGATTGAGAGAATTTCCGAGCTTTGGATGATATTGAGAATCTGTATCCGCTTTCCAAGATGACGAGGCACTGATTCTAGTCCGTTCACAGCACTTCTTTCATTCAAATTTTAGTCGACAGTCTGAAAATGTAATATTTTTTCATCTGAAGTCTTTGAAAACTCACATTGGCCTACTTCCATAGCTCATACCGACGTCGATCTGATGAAGACGTTGAAACTCAAGTTTTAGTCAGCACTCGATGCTTTCAAATTTTAGTCTATCAAC</canonical>
            <polymorphic>AAGCTTCTCAACTATGGTTACGGTAGATTTCGCAATTTTATCGTTTTTGATTTCGGCTATTTTGAGTAGCATATCGATATTTCATCTTATTTCTTAACTGTTTCTTATTTTCATTTTTTCAGATTCTCCTTCGAATAGGAGTTTTTTGACGACAATTTGTTCCTTGTGTAGTGAAGGTGCACGGTGTATTGCGGATTGCGTGTGTGGATTTACGGAGCAATATTTAGATTTTCGAAAACCCTATTTTTGGCTGAAAAACTTTTTAGTGAGCGAGAAAAAGCTTGAATAAGCGGAAATTAGTTTTGCAAAATTTTTCAGAAACATTTCCGTTCGTTTGGAAGCAATACAATGGAAGATAATTGTCCAATCGAGGCATTTAGAAAATTCGGAGGAGAATTTCGAAAATTATCGGAACATTTATCAAGTACGCGACGTCGTGGAGCACTTCGGAAGCAATCAAGAGACAAATAATCAGAAACCTGAGAAGAAAATGACTCTARCCGAAAAGGGTGTCTGCTCTTTCAACTAGAGCTATGTTAAACAATGATAAAGGCTCGAAAAAATGAATCAATATTTATTCAGACAATATGCTTATTTTAATTCCTGAAACTGATGAAAATCCATATAAAAAAGATAGGGACACTGGAAATAGGCTTCTTTTATTTCCATTGTGACGGAGAAAAAGTTTCAGATGTAGTTTCGTCAGTCAACAAGCGCTTTCACGCCTTTGTTAAGGATTGAGAGAATTTCCGAGCTTTGGATGATATTGAGAATCTGTATCCGCTTTCCAAGATGACGAGGCACTGATTCTAGTCCGTTCACAGCACTTCTTTCATTCAAATTTTAGTCGACAGTCTGAAAATGTAATATTTTTTCATCTGAAGTCTTTGAAAACTCACATTGGCCTACTTCCATAGCTCATACCGACGTCGATCTGATGAAGACGTTGAAACTCAAGTTTTAGTCAGCACTCGATGCTTTCAAATTTTAGTCTATCAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>196 121 109 106 79 71 64 61 56 38 28 25 23 23</canonical_bands>
                <polymorphic_bands>196 121 109 107 106 71 64 61 56 38 25 23 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTATCGGAACATTTATCAAG</pcr_primer_p1>
		<pcr_primer_p2>CTATTTCCAGTGTCCCTATCTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTATCGGAACATTTATCAAGTACGCGACGTCGTGGAGCACTTCGGAAGCAATCAAGAGACAAATAATCAGAAACCTGAGAAGAAAATGACTCTATCCGAAAAGGGTGTCTGCTCTTTCAACTAGAGCTATGTTAAACAATGATAAAGGCTCGAAAAAATGAATCAATATTTATTCAGACAATATGCTTATTTTAATTCCTGAAACTGATGAAAATCCATATAAAAAAGATAGGGACACTGGAAATAG</canonical_amplicon>
		<polymorphic_amplicon>AAATTATCGGAACATTTATCAAGTACGCGACGTCGTGGAGCACTTCGGAAGCAATCAAGAGACAAATAATCAGAAACCTGAGAAGAAAATGACTCTARCCGAAAAGGGTGTCTGCTCTTTCAACTAGAGCTATGTTAAACAATGATAAAGGCTCGAAAAAATGAATCAATATTTATTCAGACAATATGCTTATTTTAATTCCTGAAACTGATGAAAATCCATATAAAAAAGATAGGGACACTGGAAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29730</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>18338</contig_pos>
        <strand>+</strand>
        <context>GGGTGTCTGC[C/T]CTTTCAACTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAATCAGAAACCTGAGAAGAAAATGACTCTATCCGAAAAGGGTGTCTGC</left_flank>
        <right_flank>CTTTCAACTAGAGCTATGTTAAACAATGATAAAGGCTCGAAAAAATGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACGGTAGATTTCGCAATTTTATCGTTTTTGATTTCGGCTATTTTGAGTAGCATATCGATATTTCATCTTATTTCTTAACTGTTTCTTATTTTCATTTTTTCAGATTCTCCTTCGAATAGGAGTTTTTTGACGACAATTTGTTCCTTGTGTAGTGAAGGTGCACGGTGTATTGCGGATTGCGTGTGTGGATTTACGGAGCAATATTTAGATTTTCGAAAACCCTATTTTTGGCTGAAAAACTTTTTAGTGAGCGAGAAAAAGCTTGAATAAGCGGAAATTAGTTTTGCAAAATTTTTCAGAAACATTTCCGTTCGTTTGGAAGCAATACAATGGAAGATAATTGTCCAATCGAGGCATTTAGAAAATTCGGAGGAGAATTTCGAAAATTATCGGAACATTTATCAAGTACGCGACGTCGTGGAGCACTTCGGAAGCAATCAAGAGACAAATAATCAGAAACCTGAGAAGAAAATGACTCTATCCGAAAAGGGTGTCTGCTCTTTCAACTAGAGCTATGTTAAACAATGATAAAGGCTCGAAAAAATGAATCAATATTTATTCAGACAATATGCTTATTTTAATTCCTGAAACTGATGAAAATCCATATAAAAAAGATAGGGACACTGGAAATAGGCTTCTTTTATTTCCATTGTGACGGAGAAAAAGTTTCAGATGTAGTTTCGTCAGTCAACAAGCGCTTTCACGCCTTTGTTAAGGATTGAGAGAATTTCCGAGCTTTGGATGATATTGAGAATCTGTATCCGCTTTCCAAGATGACGAGGCACTGATTCTAGTCCGTTCACAGCACTTCTTTCATTCAAATTTTAGTCGACAGTCTGAAAATGTAATATTTTTTCATCTGAAGTCTTTGAAAACTCACATTGGCCTACTTCCATAGCTCATACCGACGTCGATCTGATGAAGACGTTGAAACTCAAGTTTTAGTCAGCACTCGATGCTTTCAAATTTTAGTCTATCAACCTGTAAACCGAATTTTTT</canonical>
            <polymorphic>TACGGTAGATTTCGCAATTTTATCGTTTTTGATTTCGGCTATTTTGAGTAGCATATCGATATTTCATCTTATTTCTTAACTGTTTCTTATTTTCATTTTTTCAGATTCTCCTTCGAATAGGAGTTTTTTGACGACAATTTGTTCCTTGTGTAGTGAAGGTGCACGGTGTATTGCGGATTGCGTGTGTGGATTTACGGAGCAATATTTAGATTTTCGAAAACCCTATTTTTGGCTGAAAAACTTTTTAGTGAGCGAGAAAAAGCTTGAATAAGCGGAAATTAGTTTTGCAAAATTTTTCAGAAACATTTCCGTTCGTTTGGAAGCAATACAATGGAAGATAATTGTCCAATCGAGGCATTTAGAAAATTCGGAGGAGAATTTCGAAAATTATCGGAACATTTATCAAGTACGCGACGTCGTGGAGCACTTCGGAAGCAATCAAGAGACAAATAATCAGAAACCTGAGAAGAAAATGACTCTATCCGAAAAGGGTGTCTGCYCTTTCAACTAGAGCTATGTTAAACAATGATAAAGGCTCGAAAAAATGAATCAATATTTATTCAGACAATATGCTTATTTTAATTCCTGAAACTGATGAAAATCCATATAAAAAAGATAGGGACACTGGAAATAGGCTTCTTTTATTTCCATTGTGACGGAGAAAAAGTTTCAGATGTAGTTTCGTCAGTCAACAAGCGCTTTCACGCCTTTGTTAAGGATTGAGAGAATTTCCGAGCTTTGGATGATATTGAGAATCTGTATCCGCTTTCCAAGATGACGAGGCACTGATTCTAGTCCGTTCACAGCACTTCTTTCATTCAAATTTTAGTCGACAGTCTGAAAATGTAATATTTTTTCATCTGAAGTCTTTGAAAACTCACATTGGCCTACTTCCATAGCTCATACCGACGTCGATCTGATGAAGACGTTGAAACTCAAGTTTTAGTCAGCACTCGATGCTTTCAAATTTTAGTCTATCAACCTGTAAACCGAATTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAATAATCAGAAACCTGAGAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTGTTGACTGACGAAACTACAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAATAATCAGAAACCTGAGAAGAAAATGACTCTATCCGAAAAGGGTGTCTGCTCTTTCAACTAGAGCTATGTTAAACAATGATAAAGGCTCGAAAAAATGAATCAATATTTATTCAGACAATATGCTTATTTTAATTCCTGAAACTGATGAAAATCCATATAAAAAAGATAGGGACACTGGAAATAGGCTTCTTTTATTTCCATTGTGACGGAGAAAAAGTTTCAGATGTAGTTTCGTCAGTCAACAAG</canonical_amplicon>
		<polymorphic_amplicon>CAAATAATCAGAAACCTGAGAAGAAAATGACTCTATCCGAAAAGGGTGTCTGCYCTTTCAACTAGAGCTATGTTAAACAATGATAAAGGCTCGAAAAAATGAATCAATATTTATTCAGACAATATGCTTATTTTAATTCCTGAAACTGATGAAAATCCATATAAAAAAGATAGGGACACTGGAAATAGGCTTCTTTTATTTCCATTGTGACGGAGAAAAAGTTTCAGATGTAGTTTCGTCAGTCAACAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29731</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>86122</contig_pos>
        <strand>+</strand>
        <context>GGTAAAGCAA[C/T]TGAATTGGGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATTTCGGATGGGGGAAACAAATGGTGACTCTCTAATACGGTAAAGCAA</left_flank>
        <right_flank>TGAATTGGGGGGGGGGGGGGGGATTGGTAGCAAGTTACAGTGTTGAAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAAAAATTTATTAGCAAAAAATTTGAGAAATAACGACAAGAAACAAGCAAAATCTGATGAAAAAAGGTAAAATCTACGTTGCAAATAAATAAAAGAAAGGTCAGTCCGACGGGGCGCGTTTGCATTGCCCTTGTGTTTTGGGGGAGAGTGACGTCATAGAACTGTGGGGAGGAGACCGAACGTTTTGTGTATATGCAAGTATGTGCCACGTGTATTAGTGAAGAAGACACAAAATCAATAAATGTTTATTTGAGCAGAATATCAAACAACAAAAAGGGGAAAGTGTTGGACATTGAATGATAAGAAAACGTTGTGTGAGCTAGGGAAGCAAGAAGAAAATAAGTAGAATCTGAATTCATTGGTTTGAAGGGGACATAAAAAGAATTGTTGAGCAGAAAATACAGAAATAATCACATCACAAAGATGGTTTTGAACTAAATTTTGGCTAATTTCGGATGGGGGAAACAAATGGTGACTCTCTAATACGGTAAAGCAACTGAATTGGGGGGGGGGGGGGGGATTGGTAGCAAGTTACAGTGTTGAAAGAGAAAATTAAATTTTATAAAATCGTTGCGATAGAATTTTTTTCGGCAAAATGTTTTCATGAATAGAAATTTTCTTAAAGACTGTCTACAAGTTTTGACTAAGTTTTTGAAGAGATGTTCTGTGTTTGAGCTGGTGGGGGAAGGGTTAAAAAGAATGAAGAAAAATGAATTTGATAATGCAATGGTGGTTTTTGGAAAACGCGGGGTTGATCACAAGACATATTGAATATGAATTTTGTTTTCTTGACGAGGAAACAATTATTTTTTACAGCACAAGTCACTATAATATAGACACAGGCACACATTACTGGGGAAAATCGGTTTCGTTCAGATTAGAGATTATTTTCATTGATAGTGATGCACCATGGAGCCGACACCACGATTCGAGTCGTTGCTGATTTGAAGATACTGGTCGAATTCGTGTGGATTGATGTCCTGGAAACGGGCTGTTG</canonical>
            <polymorphic>TGAAAAAAATTTATTAGCAAAAAATTTGAGAAATAACGACAAGAAACAAGCAAAATCTGATGAAAAAAGGTAAAATCTACGTTGCAAATAAATAAAAGAAAGGTCAGTCCGACGGGGCGCGTTTGCATTGCCCTTGTGTTTTGGGGGAGAGTGACGTCATAGAACTGTGGGGAGGAGACCGAACGTTTTGTGTATATGCAAGTATGTGCCACGTGTATTAGTGAAGAAGACACAAAATCAATAAATGTTTATTTGAGCAGAATATCAAACAACAAAAAGGGGAAAGTGTTGGACATTGAATGATAAGAAAACGTTGTGTGAGCTAGGGAAGCAAGAAGAAAATAAGTAGAATCTGAATTCATTGGTTTGAAGGGGACATAAAAAGAATTGTTGAGCAGAAAATACAGAAATAATCACATCACAAAGATGGTTTTGAACTAAATTTTGGCTAATTTCGGATGGGGGAAACAAATGGTGACTCTCTAATACGGTAAAGCAAYTGAATTGGGGGGGGGGGGGGGGATTGGTAGCAAGTTACAGTGTTGAAAGAGAAAATTAAATTTTATAAAATCGTTGCGATAGAATTTTTTTCGGCAAAATGTTTTCATGAATAGAAATTTTCTTAAAGACTGTCTACAAGTTTTGACTAAGTTTTTGAAGAGATGTTCTGTGTTTGAGCTGGTGGGGGAAGGGTTAAAAAGAATGAAGAAAAATGAATTTGATAATGCAATGGTGGTTTTTGGAAAACGCGGGGTTGATCACAAGACATATTGAATATGAATTTTGTTTTCTTGACGAGGAAACAATTATTTTTTACAGCACAAGTCACTATAATATAGACACAGGCACACATTACTGGGGAAAATCGGTTTCGTTCAGATTAGAGATTATTTTCATTGATAGTGATGCACCATGGAGCCGACACCACGATTCGAGTCGTTGCTGATTTGAAGATACTGGTCGAATTCGTGTGGATTGATGTCCTGGAAACGGGCTGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAACTAAATTTTGGCTAAT</pcr_primer_p1>
		<pcr_primer_p2>AGCTCAAACACAGAACATCTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAACTAAATTTTGGCTAATTTCGGATGGGGGAAACAAATGGTGACTCTCTAATACGGTAAAGCAACTGAATTGGGGGGGGGGGGGGGGATTGGTAGCAAGTTACAGTGTTGAAAGAGAAAATTAAATTTTATAAAATCGTTGCGATAGAATTTTTTTCGGCAAAATGTTTTCATGAATAGAAATTTTCTTAAAGACTGTCTACAAGTTTTGACTAAGTTTTTGAAGAGATGTTCTGTGTTTGAGCT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAACTAAATTTTGGCTAATTTCGGATGGGGGAAACAAATGGTGACTCTCTAATACGGTAAAGCAAYTGAATTGGGGGGGGGGGGGGGGATTGGTAGCAAGTTACAGTGTTGAAAGAGAAAATTAAATTTTATAAAATCGTTGCGATAGAATTTTTTTCGGCAAAATGTTTTCATGAATAGAAATTTTCTTAAAGACTGTCTACAAGTTTTGACTAAGTTTTTGAAGAGATGTTCTGTGTTTGAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29732</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>130499</contig_pos>
        <strand>+</strand>
        <context>GATATTTTAG[A/G]AAAAAAAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAAAACTAAAAACTTCAAAAACTGAATTTTCCAGAAAACGATATTTTAG</left_flank>
        <right_flank>AAAAAAAACTATTGCAAAATAGTTTTCAGTGAACTGGATTATTTTATCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGATGCGAGAACAGAACTGTCAAAATATTTACTTAAAGGCACATGCTACTTGGATTCTTTTTTTCTGGAGTAGAAACATTCAGAAAGTATACTCGATTTTTGAGCTTGACTGATAGTTCAAATTTTGTAAAAGAACTTTGATAAATTAGAAAATGCGAATGGTCGATATCCAGAGATGACAGTTTCGAAATGAGATATTGTGATTTTTAATATAAATAGAGGGAAAGTCAACGTTCTCTTCTGAAAAATGGGAATTTCATGTAGTTAGGAGAAACTGAAATTTCTATAGAGAAAGGGCTTTTCGATTTTTGGGCTTGATTGATAGGTTTCAAAATTTTGATCGAAATTTAGCAAAAAATCGATATCTGAAGCTTTGAAATGTCCAGATTTACGGTGTTTCAACAACATTCGAATTGTTCATTGGAGCGAAAAAAAAACCTTGAATTTCGAAAACTAAAAACTTCAAAAACTGAATTTTCCAGAAAACGATATTTTAGAAAAAAAAACTATTGCAAAATAGTTTTCAGTGAACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACACTGTACTATAGTAAACTAGTTATGACGTAAGCAATTTGAAACTTTTCTGACTGAAAAAAAAACAAAAAAGTGAATAGTCCTATTAATAAGATAAGGAAGTACAATCGATTGTAACAATGATGGGTGTTTTTGAATTTTCTTTACGACGATTAATGAGGTGAGGAGAGTCTCAAAGTTGAAACTTGGTTGGTCACCAGTTCTATTTTTTTGTTAGGGCCAACGTCTTTTTTTCTCTACCAACAGAAAAAAAAACGACAGAATTCGTCAGTATGTCTCTTTTTCCATAGTTCTTTTTGGCTGTTTTTCAGCCCCGACATGGGGCCCCGGGGGCTATAATCGCTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTT</canonical>
            <polymorphic>TTTGATGCGAGAACAGAACTGTCAAAATATTTACTTAAAGGCACATGCTACTTGGATTCTTTTTTTCTGGAGTAGAAACATTCAGAAAGTATACTCGATTTTTGAGCTTGACTGATAGTTCAAATTTTGTAAAAGAACTTTGATAAATTAGAAAATGCGAATGGTCGATATCCAGAGATGACAGTTTCGAAATGAGATATTGTGATTTTTAATATAAATAGAGGGAAAGTCAACGTTCTCTTCTGAAAAATGGGAATTTCATGTAGTTAGGAGAAACTGAAATTTCTATAGAGAAAGGGCTTTTCGATTTTTGGGCTTGATTGATAGGTTTCAAAATTTTGATCGAAATTTAGCAAAAAATCGATATCTGAAGCTTTGAAATGTCCAGATTTACGGTGTTTCAACAACATTCGAATTGTTCATTGGAGCGAAAAAAAAACCTTGAATTTCGAAAACTAAAAACTTCAAAAACTGAATTTTCCAGAAAACGATATTTTAGRAAAAAAAACTATTGCAAAATAGTTTTCAGTGAACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACACTGTACTATAGTAAACTAGTTATGACGTAAGCAATTTGAAACTTTTCTGACTGAAAAAAAAACAAAAAAGTGAATAGTCCTATTAATAAGATAAGGAAGTACAATCGATTGTAACAATGATGGGTGTTTTTGAATTTTCTTTACGACGATTAATGAGGTGAGGAGAGTCTCAAAGTTGAAACTTGGTTGGTCACCAGTTCTATTTTTTTGTTAGGGCCAACGTCTTTTTTTCTCTACCAACAGAAAAAAAAACGACAGAATTCGTCAGTATGTCTCTTTTTCCATAGTTCTTTTTGGCTGTTTTTCAGCCCCGACATGGGGCCCCGGGGGCTATAATCGCTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAATGTCCAGATTTACG</pcr_primer_p1>
		<pcr_primer_p2>GTGTCGTTAGAGTATATTTCCATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAATGTCCAGATTTACGGTGTTTCAACAACATTCGAATTGTTCATTGGAGCGAAAAAAAAACCTTGAATTTCGAAAACTAAAAACTTCAAAAACTGAATTTTCCAGAAAACGATATTTTAGAAAAAAAAACTATTGCAAAATAGTTTTCAGTGAACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACAC</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAATGTCCAGATTTACGGTGTTTCAACAACATTCGAATTGTTCATTGGAGCGAAAAAAAAACCTTGAATTTCGAAAACTAAAAACTTCAAAAACTGAATTTTCCAGAAAACGATATTTTAGRAAAAAAAACTATTGCAAAATAGTTTTCAGTGAACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29733</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>130675</contig_pos>
        <strand>+</strand>
        <context>TTTCTGACTG[C/G]AAAAAAAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TACTATAGTAAACTAGTTATGACGTAAGCAATTTGAAACTTTTCTGACTG</left_flank>
        <right_flank>AAAAAAAACAAAAAAGTGAATAGTCCTATTAATAAGATAAGGAAGTACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGACAGTTTCGAAATGAGATATTGTGATTTTTAATATAAATAGAGGGAAAGTCAACGTTCTCTTCTGAAAAATGGGAATTTCATGTAGTTAGGAGAAACTGAAATTTCTATAGAGAAAGGGCTTTTCGATTTTTGGGCTTGATTGATAGGTTTCAAAATTTTGATCGAAATTTAGCAAAAAATCGATATCTGAAGCTTTGAAATGTCCAGATTTACGGTGTTTCAACAACATTCGAATTGTTCATTGGAGCGAAAAAAAAACCTTGAATTTCGAAAACTAAAAACTTCAAAAACTGAATTTTCCAGAAAACGATATTTTAGAAAAAAAAACTATTGCAAAATAGTTTTCAGTGAACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACACTGTACTATAGTAAACTAGTTATGACGTAAGCAATTTGAAACTTTTCTGACTGAAAAAAAAACAAAAAAGTGAATAGTCCTATTAATAAGATAAGGAAGTACAATCGATTGTAACAATGATGGGTGTTTTTGAATTTTCTTTACGACGATTAATGAGGTGAGGAGAGTCTCAAAGTTGAAACTTGGTTGGTCACCAGTTCTATTTTTTTGTTAGGGCCAACGTCTTTTTTTCTCTACCAACAGAAAAAAAAACGACAGAATTCGTCAGTATGTCTCTTTTTCCATAGTTCTTTTTGGCTGTTTTTCAGCCCCGACATGGGGCCCCGGGGGCTATAATCGCTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTTTTTTCTTCAGTCAGTTTTTTTGCGACCCTGTCTAGAATTTTTTTCAGCGGTGGCTGAGGATAGAGAACGAGAGACACCCGCACTCCGATTGGCCAGTGTCAGCTCTGGACGTTGGGACAAAAGTACCGCCCAGTTTTTTTCCTCTCCTGCTGTCGCATCGTCGCCATCATCGAGAC</canonical>
            <polymorphic>GATGACAGTTTCGAAATGAGATATTGTGATTTTTAATATAAATAGAGGGAAAGTCAACGTTCTCTTCTGAAAAATGGGAATTTCATGTAGTTAGGAGAAACTGAAATTTCTATAGAGAAAGGGCTTTTCGATTTTTGGGCTTGATTGATAGGTTTCAAAATTTTGATCGAAATTTAGCAAAAAATCGATATCTGAAGCTTTGAAATGTCCAGATTTACGGTGTTTCAACAACATTCGAATTGTTCATTGGAGCGAAAAAAAAACCTTGAATTTCGAAAACTAAAAACTTCAAAAACTGAATTTTCCAGAAAACGATATTTTAGAAAAAAAAACTATTGCAAAATAGTTTTCAGTGAACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACACTGTACTATAGTAAACTAGTTATGACGTAAGCAATTTGAAACTTTTCTGACTGSAAAAAAAACAAAAAAGTGAATAGTCCTATTAATAAGATAAGGAAGTACAATCGATTGTAACAATGATGGGTGTTTTTGAATTTTCTTTACGACGATTAATGAGGTGAGGAGAGTCTCAAAGTTGAAACTTGGTTGGTCACCAGTTCTATTTTTTTGTTAGGGCCAACGTCTTTTTTTCTCTACCAACAGAAAAAAAAACGACAGAATTCGTCAGTATGTCTCTTTTTCCATAGTTCTTTTTGGCTGTTTTTCAGCCCCGACATGGGGCCCCGGGGGCTATAATCGCTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTTTTTTCTTCAGTCAGTTTTTTTGCGACCCTGTCTAGAATTTTTTTCAGCGGTGGCTGAGGATAGAGAACGAGAGACACCCGCACTCCGATTGGCCAGTGTCAGCTCTGGACGTTGGGACAAAAGTACCGCCCAGTTTTTTTCCTCTCCTGCTGTCGCATCGTCGCCATCATCGAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTGGATTATTTTATCAGAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCATTAATCGTCGTAAAGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACACTGTACTATAGTAAACTAGTTATGACGTAAGCAATTTGAAACTTTTCTGACTGAAAAAAAAACAAAAAAGTGAATAGTCCTATTAATAAGATAAGGAAGTACAATCGATTGTAACAATGATGGGTGTTTTTGAATTTTCTTTACGACGATTAATGA</canonical_amplicon>
		<polymorphic_amplicon>AACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACACTGTACTATAGTAAACTAGTTATGACGTAAGCAATTTGAAACTTTTCTGACTGSAAAAAAAACAAAAAAGTGAATAGTCCTATTAATAAGATAAGGAAGTACAATCGATTGTAACAATGATGGGTGTTTTTGAATTTTCTTTACGACGATTAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29734</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>131011</contig_pos>
        <strand>+</strand>
        <context>TYTCTTCAGT[C/T]AGTTTTTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTTTTTTCTTCAGT</left_flank>
        <right_flank>AGTTTTTTTGCGACCCTGTCTAGAATTTTTTTCAGCGGTGGCTGAGGATA</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCAAAATAGTTTTCAGTGAACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACACTGTACTATAGTAAACTAGTTATGACGTAAGCAATTTGAAACTTTTCTGACTGAAAAAAAAACAAAAAAGTGAATAGTCCTATTAATAAGATAAGGAAGTACAATCGATTGTAACAATGATGGGTGTTTTTGAATTTTCTTTACGACGATTAATGAGGTGAGGAGAGTCTCAAAGTTGAAACTTGGTTGGTCACCAGTTCTATTTTTTTGTTAGGGCCAACGTCTTTTTTTCTCTACCAACAGAAAAAAAAACGACAGAATTCGTCAGTATGTCTCTTTTTCCATAGTTCTTTTTGGCTGTTTTTCAGCCCCGACATGGGGCCCCGGGGGCTATAATCGCTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTTTTTTCTTCAGTCAGTTTTTTTGCGACCCTGTCTAGAATTTTTTTCAGCGGTGGCTGAGGATAGAGAACGAGAGACACCCGCACTCCGATTGGCCAGTGTCAGCTCTGGACGTTGGGACAAAAGTACCGCCCAGTTTTTTTCCTCTCCTGCTGTCGCATCGTCGCCATCATCGAGACTACTACTATTTCGCGAGCGACTCTCGCTTTCTAATCTTGCCCCCCGATTCACTTTGCGTGCAGCAAAAACAAAGTATACGGTAAAAAATGGACGTGTTTTACACTGTGCGGGCCTTTTTTTTGAACTTTTAACAAACTTGGAATGAAATTTTTTAGAATGAAATGAAGAAAAGAGACAAAAATTACAATTTGGGTCTTTTTCAAAAAACAACACAGTAATCAAACTTGCACTCTGCAATTTAGAAAGGATGATATAAGTACAGTATCAAGATCCAAAAAAACAGAATTTCGTAATAATAAAACAACGACACTATGCTAGTAAAAAAGTTATGAGCT</canonical>
            <polymorphic>TGCAAAATAGTTTTCAGTGAACTGGATTATTTTATCAGAACTTTTATTTTATCAAATCTGAAAATTTCTTATTCGTTGACAAAAAAAAATGGAAATATACTCTAACGACACTGTACTATAGTAAACTAGTTATGACGTAAGCAATTTGAAACTTTTCTGACTGAAAAAAAAACAAAAAAGTGAATAGTCCTATTAATAAGATAAGGAAGTACAATCGATTGTAACAATGATGGGTGTTTTTGAATTTTCTTTACGACGATTAATGAGGTGAGGAGAGTCTCAAAGTTGAAACTTGGTTGGTCACCAGTTCTATTTTTTTGTTAGGGCCAACGTCTTTTTTTCTCTACCAACAGAAAAAAAAACGACAGAATTCGTCAGTATGTCTCTTTTTCCATAGTTCTTTTTGGCTGTTTTTCAGCCCCGACATGGGGCCCCGGGGGCTATAATCGCTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTTTTTTCTTCAGTYAGTTTTTTTGCGACCCTGTCTAGAATTTTTTTCAGCGGTGGCTGAGGATAGAGAACGAGAGACACCCGCACTCCGATTGGCCAGTGTCAGCTCTGGACGTTGGGACAAAAGTACCGCCCAGTTTTTTTCCTCTCCTGCTGTCGCATCGTCGCCATCATCGAGACTACTACTATTTCGCGAGCGACTCTCGCTTTCTAATCTTGCCCCCCGATTCACTTTGCGTGCAGCAAAAACAAAGTATACGGTAAAAAATGGACGTGTTTTACACTGTGCGGGCCTTTTTTTTGAACTTTTAACAAACTTGGAATGAAATTTTTTAGAATGAAATGAAGAAAAGAGACAAAAATTACAATTTGGGTCTTTTTCAAAAAACAACACAGTAATCAAACTTGCACTCTGCAATTTAGAAAGGATGATATAAGTACAGTATCAAGATCCAAAAAAACAGAATTTCGTAATAATAAAACAACGACACTATGCTAGTAAAAAAGTTATGAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAGAATTCGTCAGTATGTCTC</pcr_primer_p1>
		<pcr_primer_p2>GTGTCTCTCGTTCTCTATCCTC</pcr_primer_p2>
		<pcr_amplicon_size>202</pcr_amplicon_size>
		<canonical_amplicon>GACAGAATTCGTCAGTATGTCTCTTTTTCCATAGTTCTTTTTGGCTGTTTTTCAGCCCCGACATGGGGCCCCGGGGGCTATAATCGCTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTTTTTTCTTCAGTCAGTTTTTTTGCGACCCTGTCTAGAATTTTTTTCAGCGGTGGCTGAGGATAGAGAACGAGAGACAC</canonical_amplicon>
		<polymorphic_amplicon>GACAGAATTCGTCAGTATGTCTCTTTTTCCATAGTTCTTTTTGGCTGTTTTTCAGCCCCGACATGGGGCCCCGGGGGCTATAATCGCTGGTGGTTCGTACTCTCGTCCAGTCCACGTTCCCTTTTTTTTCTTCAGTYAGTTTTTTTGCGACCCTGTCTAGAATTTTTTTCAGCGGTGGCTGAGGATAGAGAACGAGAGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29735</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>178240</contig_pos>
        <strand>+</strand>
        <context>TTGCTAAATW[A/C]YGWGCTYGYA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATT</left_flank>
        <right_flank>CGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCAGTAATTTCACTGTTAACCCCAACACCTGAATTCTGGAATTCTAATTATTCCCTATTCCCCCTGTCTTGTACTATCACTGGTTTTAGTGCCACCAACCCTCCCATCCAAATTGTTTCAATTTTTAACCGCACTAGCATATATTTTACGGTCGTTAAGTGTTATCTTACTCCTTTTTCCCTCTGTCATTTCGTTTTAGCCAGCCGTTTGACGCCACTGATAACTAGCAAAAAAAAATTACTCACCATTTTGAAATTTTTGTTAAACTTTCTGCTTTGTGTTGAGTGACCTTAAAACGTTCCGAAGACAAATCATATTTTTTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTTTTGCTAAACTTTTGATTCTCTCACCGATCACTCTGTTTCCCCGGATCTTACAAAAAACACTGTTTTTAGATGTTCCGTCCGACGTTTGACACTTTTCGACCGCCGAACAGTGACAGCTCGACTTTCCGTGCCAGCCAAAGCAGGTATGTTTGTTTTTCGGAAGAAAATTTTTCGTTTGGAGGAGTGTGGTGTTCGGTTTTGAAAAGTATGGATCAGAAATTTCCTTGGATTTTGGGGCATAAGTTCTTTGAAAAAATGCGATTCAAATTTTCAAAGACACATGAAAGACAAAGCGAACAGAATTAATTCGAGTTCAGTTCACAGCTAATCGTTTTG</canonical>
            <polymorphic>TCTCAGTAATTTCACTGTTAACCCCAACACCTGAATTCTGGAATTCTAATTATTCCCTATTCCCCCTGTCTTGTACTATCACTGGTTTTAGTGCCACCAACCCTCCCATCCAAATTGTTTCAATTTTTAACCGCACTAGCATATATTTTACGGTCGTTAAGTGTTATCTTACTCCTTTTTCCCTCTGTCATTTCGTTTTAGCCAGCCGTTTGACGCCACTGATAACTAGCAAAAAAAAATTACTCACCATTTTGAAATTTTTGTTAAACTTTCTGCTTTGTGTTGAGTGACCTTAAAACGTTCCGAAGACAAATCATATTTTTTGCAGAAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTMCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTTTTGCTAAACTTTTGATTCTCTCACCGATCACTCTGTTTCCCCGGATCTTACAAAAAACACTGTTTTTAGATGTTCCGTCCGACGTTTGACACTTTTCGACCGCCGAACAGTGACAGCTCGACTTTCCGTGCCAGCCAAAGCAGGTATGTTTGTTTTTCGGAAGAAAATTTTTCGTTTGGAGGAGTGTGGTGTTCGGTTTTGAAAAGTATGGATCAGAAATTTCCTTGGATTTTGGGGCATAAGTTCTTTGAAAAAATGCGATTCAAATTTTCAAAGACACATGAAAGACAAAGCGAACAGAATTAATTCGAGTTCAGTTCACAGCTAATCGTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>240 214 194 119 71 52 48 33 21 8</canonical_bands>
                <polymorphic_bands>359 214 194 71 52 48 33 21 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGACAGTGGTTGATGTAAGTT</pcr_primer_p1>
		<pcr_primer_p2>AAAGTGATTCATCGAAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTT</canonical_amplicon>
		<polymorphic_amplicon>CGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTMCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29736</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>178568</contig_pos>
        <strand>+</strand>
        <context>TTTTCGGAAG[A/C]AAATTTTTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAGCTCGACTTTCCGTGCCAGCCAAAGCAGGTATGTTTGTTTTTCGGAAG</left_flank>
        <right_flank>AAATTTTTCGTTTGGAGGAGTGTGGTGTTCGGTTTTGAAAAGTATGGATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTTTTGCTAAACTTTTGATTCTCTCACCGATCACTCTGTTTCCCCGGATCTTACAAAAAACACTGTTTTTAGATGTTCCGTCCGACGTTTGACACTTTTCGACCGCCGAACAGTGACAGCTCGACTTTCCGTGCCAGCCAAAGCAGGTATGTTTGTTTTTCGGAAGAAAATTTTTCGTTTGGAGGAGTGTGGTGTTCGGTTTTGAAAAGTATGGATCAGAAATTTCCTTGGATTTTGGGGCATAAGTTCTTTGAAAAAATGCGATTCAAATTTTCAAAGACACATGAAAGACAAAGCGAACAGAATTAATTCGAGTTCAGTTCACAGCTAATCGTTTTGCATTTGACTCTTACTGCTCTCAATGCTCTTTCCCCAATGAGAAGGACCCCCTTCTCTCATTTCTCGTTTCGAATATATTAAGGGCTTCCTCGTCCCATTTGCTCGTTTTGTCTTCCATGTTCGTTCGTTTTCACTCATTTCCTCGTTGTCCGGTATGTTTGATAGAGCTCTTTCCCATTTTTCCGATCGGCTTTCCATTTCTGTCTCTTCTTCTTCTCTCTATTGTCTTTTGGTGTTTCTCATTTAGTTCTCTCCTAATTTCACATACACACTGTGCTTTTGAGCTCATCTCGGTCAATTCTTCGGTTTTTCGCGCGGCCACCACCAA</canonical>
            <polymorphic>AAGATACTGTCTTTGATCGGCCGGTGGCGAGTCCGAAAACGGAAAACTCGAGCAGGCTAGCCGAAGAAATCGAACGGAGCAAGAGTCCGACAGTGGTTGATGTAAGTTTTTTTAGCTTTAAATTAAAAAAAATATTGATAAAAATTGACTCGCTTCAAAAATTGCTAAATTTCGTGCTTGTAAGTTAAAGACCCGGCCCGCCACGGCCCATGCCCGGGCCGGGTCTGTTCGAAAGAACATTTTTCACTCAAGACTGCCCATTTCCATTTGTTCTTGGGATTAATGAAATTTCGAAACAACCACAAGAAATTTCAAAGGTTTTCGATGAATCACTTTTTGCTAAACTTTTGATTCTCTCACCGATCACTCTGTTTCCCCGGATCTTACAAAAAACACTGTTTTTAGATGTTCCGTCCGACGTTTGACACTTTTCGACCGCCGAACAGTGACAGCTCGACTTTCCGTGCCAGCCAAAGCAGGTATGTTTGTTTTTCGGAAGMAAATTTTTCGTTTGGAGGAGTGTGGTGTTCGGTTTTGAAAAGTATGGATCAGAAATTTCCTTGGATTTTGGGGCATAAGTTCTTTGAAAAAATGCGATTCAAATTTTCAAAGACACATGAAAGACAAAGCGAACAGAATTAATTCGAGTTCAGTTCACAGCTAATCGTTTTGCATTTGACTCTTACTGCTCTCAATGCTCTTTCCCCAATGAGAAGGACCCCCTTCTCTCATTTCTCGTTTCGAATATATTAAGGGCTTCCTCGTCCCATTTGCTCGTTTTGTCTTCCATGTTCGTTCGTTTTCACTCATTTCCTCGTTGTCCGGTATGTTTGATAGAGCTCTTTCCCATTTTTCCGATCGGCTTTCCATTTCTGTCTCTTCTTCTTCTCTCTATTGTCTTTTGGTGTTTCTCATTTAGTTCTCTCCTAATTTCACATACACACTGTGCTTTTGAGCTCATCTCGGTCAATTCTTCGGTTTTTCGCGCGGCCACCACCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGGTTTTCGATGAATCACT</pcr_primer_p1>
		<pcr_primer_p2>AAGGAAATTTCTGATCCATACTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAGGTTTTCGATGAATCACTTTTTGCTAAACTTTTGATTCTCTCACCGATCACTCTGTTTCCCCGGATCTTACAAAAAACACTGTTTTTAGATGTTCCGTCCGACGTTTGACACTTTTCGACCGCCGAACAGTGACAGCTCGACTTTCCGTGCCAGCCAAAGCAGGTATGTTTGTTTTTCGGAAGAAAATTTTTCGTTTGGAGGAGTGTGGTGTTCGGTTTTGAAAAGTATGGATCAGAAATTTCCTT</canonical_amplicon>
		<polymorphic_amplicon>AAAGGTTTTCGATGAATCACTTTTTGCTAAACTTTTGATTCTCTCACCGATCACTCTGTTTCCCCGGATCTTACAAAAAACACTGTTTTTAGATGTTCCGTCCGACGTTTGACACTTTTCGACCGCCGAACAGTGACAGCTCGACTTTCCGTGCCAGCCAAAGCAGGTATGTTTGTTTTTCGGAAGMAAATTTTTCGTTTGGAGGAGTGTGGTGTTCGGTTTTGAAAAGTATGGATCAGAAATTTCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29737</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>179443</contig_pos>
        <strand></strand>
        <context>TCAATCTATT[A/G]AAACTaccgt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACGATTTTTTCATACAAAAACGTTGACTTTCTTCCAACTTCAATCTATT</left_flank>
        <right_flank>AAACTACCGTGAACGCTGTAGTAGAAGCTCAGCGTATACATAAACTTTGA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCTTCTTCTTCTCTCTATTGTCTTTTGGTGTTTCTCATTTAGTTCTCTCCTAATTTCACATACACACTGTGCTTTTGAGCTCATCTCGGTCAATTCTTCGGTTTTTCGCGCGGCCACCACCAACACCAAATATGCAAATACAGTCGTTTTCCGTTTCCGGAGAGATTATTTTTCTGCGGTTGTGTGCAGAAACCCCGCATTTGTAGAAAAGATATGTGATGGGACTGTTTTTAATTTGGTTTTGTTTTTAGTTTTGAAACTTAGACTGAATTAGAATTCTGAAAAATTTATTGAAATTCACTTCATCTATATTCTCACGTGAAAAAAAACGGAAAAATCGAGATTCCATGTTTTCACATCGAGTTTGATAGTTTGTGGTTCTGTCTACATTTTTCATAATTTTGACTAAAATGCTATACTATGTTTGAAATAGTTTTCAGTGATTTTAACGATTTTTTCATACAAAAACGTTGACTTTCTTCCAACTTCAATCTATTAAAACTACCGTGAACGCTGTAGTAGAAGCTCAGCGTATACATAAACTTTGAGCTCAATTATCTCGGTTCTTATAAAATATCATAAATTTGTCAAGTAACAAAATGTTTGTGATAATGTGATAAATAATTTATCAGTTGACCAATTTTCGGTATCTTTCATGAGAACCGAGATTATTGTGCTCAAATTTGACAGCTTGGGTGGGTTTACCATATTTTATTTTTAAATGATTTTCAGTAATTTTTTTCTTCTAAATAGCTTGTTCTTTGTCTAGCTTAATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTGTCCTGCA</canonical>
            <polymorphic>TCTCTTCTTCTTCTCTCTATTGTCTTTTGGTGTTTCTCATTTAGTTCTCTCCTAATTTCACATACACACTGTGCTTTTGAGCTCATCTCGGTCAATTCTTCGGTTTTTCGCGCGGCCACCACCAACACCAAATATGCAAATACAGTCGTTTTCCGTTTCCGGAGAGATTATTTTTCTGCGGTTGTGTGCAGAAACCCCGCATTTGTAGAAAAGATATGTGATGGGACTGTTTTTAATTTGGTTTTGTTTTTAGTTTTGAAACTTAGACTGAATTAGAATTCTGAAAAATTTATTGAAATTCACTTCATCTATATTCTCACGTGAAAAAAAACGGAAAAATCGAGATTCCATGTTTTCACATCGAGTTTGATAGTTTGTGGTTCTGTCTACATTTTTCATAATTTTGACTAAAATGCTATACTATGTTTGAAATAGTTTTCAGTGATTTTAACGATTTTTTCATACAAAAACGTTGACTTTCTTCCAACTTCAATCTATTRAAACTACCGTGAACGCTGTAGTAGAAGCTCAGCGTATACATAAACTTTGAGCTCAATTATCTCGGTTCTTATAAAATATCATAAATTTGTCAAGTAACAAAATGTTTGTGATAATGTGATAAATAATTTATCAGTTGACCAATTTTCGGTATCTTTCATGAGAACCGAGATTATTGTGCTCAAATTTGACAGCTTGGGTGGGTTTACCATATTTTATTTTTAAATGATTTTCAGTAATTTTTTTCTTCTAAATAGCTTGTTCTTTGTCTAGCTTAATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTGTCCTGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>233 222 215 146 81 53 50</canonical_bands>
                <polymorphic_bands>272 233 215 146 81 53</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGTGATTTTAACGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAAAGAACAAGCTATTTAGAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGTGATTTTAACGATTTTTTCATACAAAAACGTTGACTTTCTTCCAACTTCAATCTATTAAAACTACCGTGAACGCTGTAGTAGAAGCTCAGCGTATACATAAACTTTGAGCTCAATTATCTCGGTTCTTATAAAATATCATAAATTTGTCAAGTAACAAAATGTTTGTGATAATGTGATAAATAATTTATCAGTTGACCAATTTTCGGTATCTTTCATGAGAACCGAGATTATTGTGCTCAAATTTGACAGCTTGGGTGGGTTTACCATATTTTATTTTTAAATGATTTTCAGTAATTTTTTTCTTCTAAATAGCTTGTTCTTTG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGTGATTTTAACGATTTTTTCATACAAAAACGTTGACTTTCTTCCAACTTCAATCTATTRAAACTACCGTGAACGCTGTAGTAGAAGCTCAGCGTATACATAAACTTTGAGCTCAATTATCTCGGTTCTTATAAAATATCATAAATTTGTCAAGTAACAAAATGTTTGTGATAATGTGATAAATAATTTATCAGTTGACCAATTTTCGGTATCTTTCATGAGAACCGAGATTATTGTGCTCAAATTTGACAGCTTGGGTGGGTTTACCATATTTTATTTTTAAATGATTTTCAGTAATTTTTTTCTTCTAAATAGCTTGTTCTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29738</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>179615</contig_pos>
        <strand></strand>
        <context>gaaccgagat[T/A]attgtgctca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATAATTTATCAGTTGACCAATTTTCGGTATCTTTCATGAGAACCGAGAT</left_flank>
        <right_flank>ATTGTGCTCAAATTTGACAGCTTGGGTGGGTTTACCATATTTTATTTTTA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTGCGGTTGTGTGCAGAAACCCCGCATTTGTAGAAAAGATATGTGATGGGACTGTTTTTAATTTGGTTTTGTTTTTAGTTTTGAAACTTAGACTGAATTAGAATTCTGAAAAATTTATTGAAATTCACTTCATCTATATTCTCACGTGAAAAAAAACGGAAAAATCGAGATTCCATGTTTTCACATCGAGTTTGATAGTTTGTGGTTCTGTCTACATTTTTCATAATTTTGACTAAAATGCTATACTATGTTTGAAATAGTTTTCAGTGATTTTAACGATTTTTTCATACAAAAACGTTGACTTTCTTCCAACTTCAATCTATTAAAACTACCGTGAACGCTGTAGTAGAAGCTCAGCGTATACATAAACTTTGAGCTCAATTATCTCGGTTCTTATAAAATATCATAAATTTGTCAAGTAACAAAATGTTTGTGATAATGTGATAAATAATTTATCAGTTGACCAATTTTCGGTATCTTTCATGAGAACCGAGATTATTGTGCTCAAATTTGACAGCTTGGGTGGGTTTACCATATTTTATTTTTAAATGATTTTCAGTAATTTTTTTCTTCTAAATAGCTTGTTCTTTGTCTAGCTTAATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTGTCCTGCACCATCAACTGTCTTTCCTTTCATCTCTGACTCTCCCTATTTTGAAATGTATGCAAATTCAGTTCAGCGCTATTCATGTAAATTTGCTTCCCCTGACGTTTACGCACTTTACACTACGACATCATCATTCTTATTAACTTTTAGTAATATATTTCACTCCGTTTTTACAACGA</canonical>
            <polymorphic>TTTCTGCGGTTGTGTGCAGAAACCCCGCATTTGTAGAAAAGATATGTGATGGGACTGTTTTTAATTTGGTTTTGTTTTTAGTTTTGAAACTTAGACTGAATTAGAATTCTGAAAAATTTATTGAAATTCACTTCATCTATATTCTCACGTGAAAAAAAACGGAAAAATCGAGATTCCATGTTTTCACATCGAGTTTGATAGTTTGTGGTTCTGTCTACATTTTTCATAATTTTGACTAAAATGCTATACTATGTTTGAAATAGTTTTCAGTGATTTTAACGATTTTTTCATACAAAAACGTTGACTTTCTTCCAACTTCAATCTATTAAAACTACCGTGAACGCTGTAGTAGAAGCTCAGCGTATACATAAACTTTGAGCTCAATTATCTCGGTTCTTATAAAATATCATAAATTTGTCAAGTAACAAAATGTTTGTGATAATGTGATAAATAATTTATCAGTTGACCAATTTTCGGTATCTTTCATGAGAACCGAGATWATTGTGCTCAAATTTGACAGCTTGGGTGGGTTTACCATATTTTATTTTTAAATGATTTTCAGTAATTTTTTTCTTCTAAATAGCTTGTTCTTTGTCTAGCTTAATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTGTCCTGCACCATCAACTGTCTTTCCTTTCATCTCTGACTCTCCCTATTTTGAAATGTATGCAAATTCAGTTCAGCGCTATTCATGTAAATTTGCTTCCCCTGACGTTTACGCACTTTACACTACGACATCATCATTCTTATTAACTTTTAGTAATATATTTCACTCCGTTTTTACAACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTTTCTTCCAACTTCAATCTA</pcr_primer_p1>
		<pcr_primer_p2>AAGAACAAGCTATTTAGAAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>290</pcr_amplicon_size>
		<canonical_amplicon>GACTTTCTTCCAACTTCAATCTATTAAAACTACCGTGAACGCTGTAGTAGAAGCTCAGCGTATACATAAACTTTGAGCTCAATTATCTCGGTTCTTATAAAATATCATAAATTTGTCAAGTAACAAAATGTTTGTGATAATGTGATAAATAATTTATCAGTTGACCAATTTTCGGTATCTTTCATGAGAACCGAGATTATTGTGCTCAAATTTGACAGCTTGGGTGGGTTTACCATATTTTATTTTTAAATGATTTTCAGTAATTTTTTTCTTCTAAATAGCTTGTTCTT</canonical_amplicon>
		<polymorphic_amplicon>GACTTTCTTCCAACTTCAATCTATTAAAACTACCGTGAACGCTGTAGTAGAAGCTCAGCGTATACATAAACTTTGAGCTCAATTATCTCGGTTCTTATAAAATATCATAAATTTGTCAAGTAACAAAATGTTTGTGATAATGTGATAAATAATTTATCAGTTGACCAATTTTCGGTATCTTTCATGAGAACCGAGATWATTGTGCTCAAATTTGACAGCTTGGGTGGGTTTACCATATTTTATTTTTAAATGATTTTCAGTAATTTTTTTCTTCTAAATAGCTTGTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29739</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>179681</contig_pos>
        <strand>+</strand>
        <context>TTTTCAGTAA[A/C]TTTTTTCTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GACAGCTTGGGTGGGTTTACCATATTTTATTTTTAAATGATTTTCAGTAA</left_flank>
        <right_flank>TTTTTTCTTCTAAATAGCTTGTTCTTTGTCTAGCTTAATTTTGACTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTTTTGTTTTTAGTTTTGAAACTTAGACTGAATTAGAATTCTGAAAAATTTATTGAAATTCACTTCATCTATATTCTCACGTGAAAAAAAACGGAAAAATCGAGATTCCATGTTTTCACATCGAGTTTGATAGTTTGTGGTTCTGTCTACATTTTTCATAATTTTGACTAAAATGCTATACTATGTTTGAAATAGTTTTCAGTGATTTTAACGATTTTTTCATACAAAAACGTTGACTTTCTTCCAACTTCAATCTATTAAAACTACCGTGAACGCTGTAGTAGAAGCTCAGCGTATACATAAACTTTGAGCTCAATTATCTCGGTTCTTATAAAATATCATAAATTTGTCAAGTAACAAAATGTTTGTGATAATGTGATAAATAATTTATCAGTTGACCAATTTTCGGTATCTTTCATGAGAACCGAGATTATTGTGCTCAAATTTGACAGCTTGGGTGGGTTTACCATATTTTATTTTTAAATGATTTTCAGTAATTTTTTTCTTCTAAATAGCTTGTTCTTTGTCTAGCTTAATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTGTCCTGCACCATCAACTGTCTTTCCTTTCATCTCTGACTCTCCCTATTTTGAAATGTATGCAAATTCAGTTCAGCGCTATTCATGTAAATTTGCTTCCCCTGACGTTTACGCACTTTACACTACGACATCATCATTCTTATTAACTTTTAGTAATATATTTCACTCCGTTTTTACAACGATCTATACTCAATTTTACTGCTTTTGGTAGAAGGTTTATAGTCCTCTTGCCATTTTTTTGTTGTAAA</canonical>
            <polymorphic>TGGTTTTGTTTTTAGTTTTGAAACTTAGACTGAATTAGAATTCTGAAAAATTTATTGAAATTCACTTCATCTATATTCTCACGTGAAAAAAAACGGAAAAATCGAGATTCCATGTTTTCACATCGAGTTTGATAGTTTGTGGTTCTGTCTACATTTTTCATAATTTTGACTAAAATGCTATACTATGTTTGAAATAGTTTTCAGTGATTTTAACGATTTTTTCATACAAAAACGTTGACTTTCTTCCAACTTCAATCTATTAAAACTACCGTGAACGCTGTAGTAGAAGCTCAGCGTATACATAAACTTTGAGCTCAATTATCTCGGTTCTTATAAAATATCATAAATTTGTCAAGTAACAAAATGTTTGTGATAATGTGATAAATAATTTATCAGTTGACCAATTTTCGGTATCTTTCATGAGAACCGAGATTATTGTGCTCAAATTTGACAGCTTGGGTGGGTTTACCATATTTTATTTTTAAATGATTTTCAGTAAMTTTTTTCTTCTAAATAGCTTGTTCTTTGTCTAGCTTAATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTGTCCTGCACCATCAACTGTCTTTCCTTTCATCTCTGACTCTCCCTATTTTGAAATGTATGCAAATTCAGTTCAGCGCTATTCATGTAAATTTGCTTCCCCTGACGTTTACGCACTTTACACTACGACATCATCATTCTTATTAACTTTTAGTAATATATTTCACTCCGTTTTTACAACGATCTATACTCAATTTTACTGCTTTTGGTAGAAGGTTTATAGTCCTCTTGCCATTTTTTTGTTGTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>170 155 103 102 57 56 54 53 42 41 39 32 29 25 16 10 10 6</canonical_bands>
                <polymorphic_bands>170 155 103 102 92 57 56 54 42 41 32 29 25 16 10 10 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCATACAAAAACGTTGAC</pcr_primer_p1>
		<pcr_primer_p2>ATAAACTTGGGAAAAGTCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>343</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCATACAAAAACGTTGACTTTCTTCCAACTTCAATCTATTAAAACTACCGTGAACGCTGTAGTAGAAGCTCAGCGTATACATAAACTTTGAGCTCAATTATCTCGGTTCTTATAAAATATCATAAATTTGTCAAGTAACAAAATGTTTGTGATAATGTGATAAATAATTTATCAGTTGACCAATTTTCGGTATCTTTCATGAGAACCGAGATTATTGTGCTCAAATTTGACAGCTTGGGTGGGTTTACCATATTTTATTTTTAAATGATTTTCAGTAATTTTTTTCTTCTAAATAGCTTGTTCTTTGTCTAGCTTAATTTTGACTTTTCCCAAGTTTAT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCATACAAAAACGTTGACTTTCTTCCAACTTCAATCTATTAAAACTACCGTGAACGCTGTAGTAGAAGCTCAGCGTATACATAAACTTTGAGCTCAATTATCTCGGTTCTTATAAAATATCATAAATTTGTCAAGTAACAAAATGTTTGTGATAATGTGATAAATAATTTATCAGTTGACCAATTTTCGGTATCTTTCATGAGAACCGAGATTATTGTGCTCAAATTTGACAGCTTGGGTGGGTTTACCATATTTTATTTTTAAATGATTTTCAGTAAMTTTTTTCTTCTAAATAGCTTGTTCTTTGTCTAGCTTAATTTTGACTTTTCCCAAGTTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29740</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>180012</contig_pos>
        <strand></strand>
        <context>CAGTTCAGCG[C/A]TATTCATGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTCATCTCTGACTCTCCCTATTTTGAAATGTATGCAAATTCAGTTCAGCG</left_flank>
        <right_flank>TATTCATGTAAATTTGCTTCCCCTGACGTTTACGCACTTTACACTACGAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATAAAATATCATAAATTTGTCAAGTAACAAAATGTTTGTGATAATGTGATAAATAATTTATCAGTTGACCAATTTTCGGTATCTTTCATGAGAACCGAGATTATTGTGCTCAAATTTGACAGCTTGGGTGGGTTTACCATATTTTATTTTTAAATGATTTTCAGTAATTTTTTTCTTCTAAATAGCTTGTTCTTTGTCTAGCTTAATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTGTCCTGCACCATCAACTGTCTTTCCTTTCATCTCTGACTCTCCCTATTTTGAAATGTATGCAAATTCAGTTCAGCGCTATTCATGTAAATTTGCTTCCCCTGACGTTTACGCACTTTACACTACGACATCATCATTCTTATTAACTTTTAGTAATATATTTCACTCCGTTTTTACAACGATCTATACTCAATTTTACTGCTTTTGGTAGAAGGTTTATAGTCCTCTTGCCATTTTTTTGTTGTAAACATAATTGTCAAAAAAAACTTGGGTATACTCAACCCTCTTGATATTTTATGTTTCCTTCTTGTGCGGCAATTATTGGCGGATTTTGTGAACGGCAAGTGGTTGAGGACACTTTCGGAAATCTGAGGGGGCGATAATTGAAATGACCTTGCTAAGTGAACCTCGGAATGATGAGGACAACGTTTTGTGAGAGGGAGAAAGATAGAGATAAAAGCCGTCGACAATTAGCGTTCGCTCAAAAGTTCATAAAATGTCCATAAAAGCTATACAACCGTAAAATGGAATGTGGTCGATGGGGGGTCGGGGACGATTTTCGAGATTTGAATTGGAACT</canonical>
            <polymorphic>TATAAAATATCATAAATTTGTCAAGTAACAAAATGTTTGTGATAATGTGATAAATAATTTATCAGTTGACCAATTTTCGGTATCTTTCATGAGAACCGAGATTATTGTGCTCAAATTTGACAGCTTGGGTGGGTTTACCATATTTTATTTTTAAATGATTTTCAGTAATTTTTTTCTTCTAAATAGCTTGTTCTTTGTCTAGCTTAATTTTGACTTTTCCCAAGTTTATTCCAAGTAGACTGAATCTTTATGAATCTCGAGAATTTTTTGTACCTTTTCTGATGCATTACAATCTGTCAAAAATCCAAACTTGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTGTCCTGCACCATCAACTGTCTTTCCTTTCATCTCTGACTCTCCCTATTTTGAAATGTATGCAAATTCAGTTCAGCGMTATTCATGTAAATTTGCTTCCCCTGACGTTTACGCACTTTACACTACGACATCATCATTCTTATTAACTTTTAGTAATATATTTCACTCCGTTTTTACAACGATCTATACTCAATTTTACTGCTTTTGGTAGAAGGTTTATAGTCCTCTTGCCATTTTTTTGTTGTAAACATAATTGTCAAAAAAAACTTGGGTATACTCAACCCTCTTGATATTTTATGTTTCCTTCTTGTGCGGCAATTATTGGCGGATTTTGTGAACGGCAAGTGGTTGAGGACACTTTCGGAAATCTGAGGGGGCGATAATTGAAATGACCTTGCTAAGTGAACCTCGGAATGATGAGGACAACGTTTTGTGAGAGGGAGAAAGATAGAGATAAAAGCCGTCGACAATTAGCGTTCGCTCAAAAGTTCATAAAATGTCCATAAAAGCTATACAACCGTAAAATGGAATGTGGTCGATGGGGGGTCGGGGACGATTTTCGAGATTTGAATTGGAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCGCT</site>
                <isoschizomers>
                    <enzyme>AfeI</enzyme>
                    <enzyme>Aor51HI</enzyme>
                    <enzyme>Eco47III</enzyme>
                    <enzyme>FunI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGACAATTTTATCAAGCTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>TGATGATGTCGTAGTGTAAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTGTCCTGCACCATCAACTGTCTTTCCTTTCATCTCTGACTCTCCCTATTTTGAAATGTATGCAAATTCAGTTCAGCGCTATTCATGTAAATTTGCTTCCCCTGACGTTTACGCACTTTACACTACGACATCATCA</canonical_amplicon>
		<polymorphic_amplicon>TGACAATTTTATCAAGCTTTTCTTTTTTTAGAGTTTGATTAACTTCCAAAAAGCATTGAAGTGTAAAAAAAATGCCTCAAACGTAACATGAGCCTACAAATGCATAGCGTGTGTCCTGCACCATCAACTGTCTTTCCTTTCATCTCTGACTCTCCCTATTTTGAAATGTATGCAAATTCAGTTCAGCGMTATTCATGTAAATTTGCTTCCCCTGACGTTTACGCACTTTACACTACGACATCATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29741</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>192758</contig_pos>
        <strand></strand>
        <context>TCTCTTGGGA[T/C]YGACAATGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACGTCATTGCTTACTAAGGAAGAAAAAAAATTGTACTCAATCTCTTGGGA</left_flank>
        <right_flank>GGACAATGGTCAGAAATCGAGATCATTGTCGCATTCTGTCTGATTGTGTA</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAGACAACTGCAATGATGGTTCATTGTCTAGCCGCTCTAATTTGATGTTTTTGAATTGTTATCTCTAATCTCTGATATCACTATTTTTAGGTTTTATCAAGAAATCATTCTCAACTTGGCTGGGTAGGTTGAAATTTCAGAAAATGCACATGGACCAGGAAGTCCAGCTACCCAAAAAAAAGACGAGTCACTAGATCCTTCCTGGATTCCCTCCATTTTTTTTGCTTCTGCATTGTAATCCAGTTAATTTTGTTTTTAGCCCCTCTATGTCTCATCCCTCGGTAGTAAAAGTGTTATTCGAGAAGCTTCATGAATTTTAATCAATTCCGACACTTGGTCTTTGGCTCGAATTCTACATTCAAAACACAACATATGAAAAATATTGGAAAAATATATTTGAATTCATTTTCGGGGGTACTATAGAAACAAGAATCATATTCCCAAAGACGTCATTGCTTACTAAGGAAGAAAAAAAATTGTACTCAATCTCTTGGGATGGACAATGGTCAGAAATCGAGATCATTGTCGCATTCTGTCTGATTGTGTACTAGTCGTAATCCTGTGAAGTTACATATGATTCATAATTTGAAAAAAAAGGAAAAAAATAAGAAATTATTTTAAGTGATGTAACGAATAAATTAAAAGATCTAATGATTTCGAAATTCTTATCATACCCCTCCTAGGTGGTTAATATGCTGTTGGCTTGTAACTGCTGGTCAGAAGTTCGTAGAAGTTTGGCTATTGGACAAATATTGACCAGGTTTTTGTCGCAAGTTGCCGAAAAAACTTCTGCATAGCGGCATACAATTTTTGTTTAAATTTTGCTCAAAAAACATTTCTAGGATCAAAACACTTCTAGAAAATAATTTCTGATGCCTTACACCTTGATCGAGATCATAATAGCAAGTGGGACGTGGAATTTTTAATTTCCTAAAACTGAAACATCCTTCATTTTTGGCATCCTCTATATAACTGATCCGTGATAAATAAATGATGA</canonical>
            <polymorphic>TTTCAGACAACTGCAATGATGGTTCATTGTCTAGCCGCTCTAATTTGATGTTTTTGAATTGTTATCTCTAATCTCTGATATCACTATTTTTAGGTTTTATCAAGAAATCATTCTCAACTTGGCTGGGTAGGTTGAAATTTCAGAAAATGCACATGGACCAGGAAGTCCAGCTACCCAAAAAAAAGACGAGTCACTAGATCCTTCCTGGATTCCCTCCATTTTTTTTGCTTCTGCATTGTAATCCAGTTAATTTTGTTTTTAGCCCCTCTATGTCTCATCCCTCGGTAGTAAAAGTGTTATTCGAGAAGCTTCATGAATTTTAATCAATTCCGACACTTGGTCTTTGGCTCGAATTCTACATTCAAAACACAACATATGAAAAATATTGGAAAAATATATTTGAATTCATTTTCGGGGGTACTATAGAAACAAGAATCATATTCCCAAAGACGTCATTGCTTACTAAGGAAGAAAAAAAATTGTACTCAATCTCTTGGGAYGGACAATGGTCAGAAATCGAGATCATTGTCGCATTCTGTCTGATTGTGTACTAGTCGTAATCCTGTGAAGTTACATATGATTCATAATTTGAAAAAAAAGGAAAAAAATAAGAAATTATTTTAAGTGATGTAACGAATAAATTAAAAGATCTAATGATTTCGAAATTCTTATCATACCCCTCCTAGGTGGTTAATATGCTGTTGGCTTGTAACTGCTGGTCAGAAGTTCGTAGAAGTTTGGCTATTGGACAAATATTGACCAGGTTTTTGTCGCAAGTTGCCGAAAAAACTTCTGCATAGCGGCATACAATTTTTGTTTAAATTTTGCTCAAAAAACATTTCTAGGATCAAAACACTTCTAGAAAATAATTTCTGATGCCTTACACCTTGATCGAGATCATAATAGCAAGTGGGACGTGGAATTTTTAATTTCCTAAAACTGAAACATCCTTCATTTTTGGCATCCTCTATATAACTGATCCGTGATAAATAAATGATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTAATCAATTCCGACACTT</pcr_primer_p1>
		<pcr_primer_p2>CACAGGATTACGACTAGTACACA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AATTTTAATCAATTCCGACACTTGGTCTTTGGCTCGAATTCTACATTCAAAACACAACATATGAAAAATATTGGAAAAATATATTTGAATTCATTTTCGGGGGTACTATAGAAACAAGAATCATATTCCCAAAGACGTCATTGCTTACTAAGGAAGAAAAAAAATTGTACTCAATCTCTTGGGATGGACAATGGTCAGAAATCGAGATCATTGTCGCATTCTGTCTGATTGTGTACTAGTCGTAATCCTGTG</canonical_amplicon>
		<polymorphic_amplicon>AATTTTAATCAATTCCGACACTTGGTCTTTGGCTCGAATTCTACATTCAAAACACAACATATGAAAAATATTGGAAAAATATATTTGAATTCATTTTCGGGGGTACTATAGAAACAAGAATCATATTCCCAAAGACGTCATTGCTTACTAAGGAAGAAAAAAAATTGTACTCAATCTCTTGGGAYGGACAATGGTCAGAAATCGAGATCATTGTCGCATTCTGTCTGATTGTGTACTAGTCGTAATCCTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29742</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>192759</contig_pos>
        <strand>+</strand>
        <context>CTCTTGGGAY[C/T]GACAATGGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTCATTGCTTACTAAGGAAGAAAAAAAATTGTACTCAATCTCTTGGGAT</left_flank>
        <right_flank>GACAATGGTCAGAAATCGAGATCATTGTCGCATTCTGTCTGATTGTGTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAGACAACTGCAATGATGGTTCATTGTCTAGCCGCTCTAATTTGATGTTTTTGAATTGTTATCTCTAATCTCTGATATCACTATTTTTAGGTTTTATCAAGAAATCATTCTCAACTTGGCTGGGTAGGTTGAAATTTCAGAAAATGCACATGGACCAGGAAGTCCAGCTACCCAAAAAAAAGACGAGTCACTAGATCCTTCCTGGATTCCCTCCATTTTTTTTGCTTCTGCATTGTAATCCAGTTAATTTTGTTTTTAGCCCCTCTATGTCTCATCCCTCGGTAGTAAAAGTGTTATTCGAGAAGCTTCATGAATTTTAATCAATTCCGACACTTGGTCTTTGGCTCGAATTCTACATTCAAAACACAACATATGAAAAATATTGGAAAAATATATTTGAATTCATTTTCGGGGGTACTATAGAAACAAGAATCATATTCCCAAAGACGTCATTGCTTACTAAGGAAGAAAAAAAATTGTACTCAATCTCTTGGGATGGACAATGGTCAGAAATCGAGATCATTGTCGCATTCTGTCTGATTGTGTACTAGTCGTAATCCTGTGAAGTTACATATGATTCATAATTTGAAAAAAAAGGAAAAAAATAAGAAATTATTTTAAGTGATGTAACGAATAAATTAAAAGATCTAATGATTTCGAAATTCTTATCATACCCCTCCTAGGTGGTTAATATGCTGTTGGCTTGTAACTGCTGGTCAGAAGTTCGTAGAAGTTTGGCTATTGGACAAATATTGACCAGGTTTTTGTCGCAAGTTGCCGAAAAAACTTCTGCATAGCGGCATACAATTTTTGTTTAAATTTTGCTCAAAAAACATTTCTAGGATCAAAACACTTCTAGAAAATAATTTCTGATGCCTTACACCTTGATCGAGATCATAATAGCAAGTGGGACGTGGAATTTTTAATTTCCTAAAACTGAAACATCCTTCATTTTTGGCATCCTCTATATAACTGATCCGTGATAAATAAATGATGAT</canonical>
            <polymorphic>TTCAGACAACTGCAATGATGGTTCATTGTCTAGCCGCTCTAATTTGATGTTTTTGAATTGTTATCTCTAATCTCTGATATCACTATTTTTAGGTTTTATCAAGAAATCATTCTCAACTTGGCTGGGTAGGTTGAAATTTCAGAAAATGCACATGGACCAGGAAGTCCAGCTACCCAAAAAAAAGACGAGTCACTAGATCCTTCCTGGATTCCCTCCATTTTTTTTGCTTCTGCATTGTAATCCAGTTAATTTTGTTTTTAGCCCCTCTATGTCTCATCCCTCGGTAGTAAAAGTGTTATTCGAGAAGCTTCATGAATTTTAATCAATTCCGACACTTGGTCTTTGGCTCGAATTCTACATTCAAAACACAACATATGAAAAATATTGGAAAAATATATTTGAATTCATTTTCGGGGGTACTATAGAAACAAGAATCATATTCCCAAAGACGTCATTGCTTACTAAGGAAGAAAAAAAATTGTACTCAATCTCTTGGGATYGACAATGGTCAGAAATCGAGATCATTGTCGCATTCTGTCTGATTGTGTACTAGTCGTAATCCTGTGAAGTTACATATGATTCATAATTTGAAAAAAAAGGAAAAAAATAAGAAATTATTTTAAGTGATGTAACGAATAAATTAAAAGATCTAATGATTTCGAAATTCTTATCATACCCCTCCTAGGTGGTTAATATGCTGTTGGCTTGTAACTGCTGGTCAGAAGTTCGTAGAAGTTTGGCTATTGGACAAATATTGACCAGGTTTTTGTCGCAAGTTGCCGAAAAAACTTCTGCATAGCGGCATACAATTTTTGTTTAAATTTTGCTCAAAAAACATTTCTAGGATCAAAACACTTCTAGAAAATAATTTCTGATGCCTTACACCTTGATCGAGATCATAATAGCAAGTGGGACGTGGAATTTTTAATTTCCTAAAACTGAAACATCCTTCATTTTTGGCATCCTCTATATAACTGATCCGTGATAAATAAATGATGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTAATCAATTCCGACACTT</pcr_primer_p1>
		<pcr_primer_p2>CACAGGATTACGACTAGTACACA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AATTTTAATCAATTCCGACACTTGGTCTTTGGCTCGAATTCTACATTCAAAACACAACATATGAAAAATATTGGAAAAATATATTTGAATTCATTTTCGGGGGTACTATAGAAACAAGAATCATATTCCCAAAGACGTCATTGCTTACTAAGGAAGAAAAAAAATTGTACTCAATCTCTTGGGATGGACAATGGTCAGAAATCGAGATCATTGTCGCATTCTGTCTGATTGTGTACTAGTCGTAATCCTGTG</canonical_amplicon>
		<polymorphic_amplicon>AATTTTAATCAATTCCGACACTTGGTCTTTGGCTCGAATTCTACATTCAAAACACAACATATGAAAAATATTGGAAAAATATATTTGAATTCATTTTCGGGGGTACTATAGAAACAAGAATCATATTCCCAAAGACGTCATTGCTTACTAAGGAAGAAAAAAAATTGTACTCAATCTCTTGGGATYGACAATGGTCAGAAATCGAGATCATTGTCGCATTCTGTCTGATTGTGTACTAGTCGTAATCCTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29743</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>192961</contig_pos>
        <strand></strand>
        <context>AATATGctgt[T/C]ggcttgtaac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATGATTTCGAAATTCTTATCATACCCCTCCTAGGTGGTTAATATGCTGT</left_flank>
        <right_flank>GGCTTGTAACTGCTGGTCAGAAGTTCGTAGAAGTTTGGCTATTGGACAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGGATTCCCTCCATTTTTTTTGCTTCTGCATTGTAATCCAGTTAATTTTGTTTTTAGCCCCTCTATGTCTCATCCCTCGGTAGTAAAAGTGTTATTCGAGAAGCTTCATGAATTTTAATCAATTCCGACACTTGGTCTTTGGCTCGAATTCTACATTCAAAACACAACATATGAAAAATATTGGAAAAATATATTTGAATTCATTTTCGGGGGTACTATAGAAACAAGAATCATATTCCCAAAGACGTCATTGCTTACTAAGGAAGAAAAAAAATTGTACTCAATCTCTTGGGATGGACAATGGTCAGAAATCGAGATCATTGTCGCATTCTGTCTGATTGTGTACTAGTCGTAATCCTGTGAAGTTACATATGATTCATAATTTGAAAAAAAAGGAAAAAAATAAGAAATTATTTTAAGTGATGTAACGAATAAATTAAAAGATCTAATGATTTCGAAATTCTTATCATACCCCTCCTAGGTGGTTAATATGCTGTTGGCTTGTAACTGCTGGTCAGAAGTTCGTAGAAGTTTGGCTATTGGACAAATATTGACCAGGTTTTTGTCGCAAGTTGCCGAAAAAACTTCTGCATAGCGGCATACAATTTTTGTTTAAATTTTGCTCAAAAAACATTTCTAGGATCAAAACACTTCTAGAAAATAATTTCTGATGCCTTACACCTTGATCGAGATCATAATAGCAAGTGGGACGTGGAATTTTTAATTTCCTAAAACTGAAACATCCTTCATTTTTGGCATCCTCTATATAACTGATCCGTGATAAATAAATGATGATATGCCGCTTCCGGTTTTGATGAAGTGACATCAGTTTCATCCTGTTTTCTGATTCTGGATCTCTCAAGATTTTTCGAGTTTCAGATTTTCTCAAAACAATTCTAGATTCTGAATTGACGTCAATGCATTTGTTTTCCGGGGGTTAATAAAAAACAAGCTGAATTATGGAAATACGGTCAAAAGAATATGTATTCCAAAGGCAA</canonical>
            <polymorphic>CCTGGATTCCCTCCATTTTTTTTGCTTCTGCATTGTAATCCAGTTAATTTTGTTTTTAGCCCCTCTATGTCTCATCCCTCGGTAGTAAAAGTGTTATTCGAGAAGCTTCATGAATTTTAATCAATTCCGACACTTGGTCTTTGGCTCGAATTCTACATTCAAAACACAACATATGAAAAATATTGGAAAAATATATTTGAATTCATTTTCGGGGGTACTATAGAAACAAGAATCATATTCCCAAAGACGTCATTGCTTACTAAGGAAGAAAAAAAATTGTACTCAATCTCTTGGGATGGACAATGGTCAGAAATCGAGATCATTGTCGCATTCTGTCTGATTGTGTACTAGTCGTAATCCTGTGAAGTTACATATGATTCATAATTTGAAAAAAAAGGAAAAAAATAAGAAATTATTTTAAGTGATGTAACGAATAAATTAAAAGATCTAATGATTTCGAAATTCTTATCATACCCCTCCTAGGTGGTTAATATGCTGTYGGCTTGTAACTGCTGGTCAGAAGTTCGTAGAAGTTTGGCTATTGGACAAATATTGACCAGGTTTTTGTCGCAAGTTGCCGAAAAAACTTCTGCATAGCGGCATACAATTTTTGTTTAAATTTTGCTCAAAAAACATTTCTAGGATCAAAACACTTCTAGAAAATAATTTCTGATGCCTTACACCTTGATCGAGATCATAATAGCAAGTGGGACGTGGAATTTTTAATTTCCTAAAACTGAAACATCCTTCATTTTTGGCATCCTCTATATAACTGATCCGTGATAAATAAATGATGATATGCCGCTTCCGGTTTTGATGAAGTGACATCAGTTTCATCCTGTTTTCTGATTCTGGATCTCTCAAGATTTTTCGAGTTTCAGATTTTCTCAAAACAATTCTAGATTCTGAATTGACGTCAATGCATTTGTTTTCCGGGGGTTAATAAAAAACAAGCTGAATTATGGAAATACGGTCAAAAGAATATGTATTCCAAAGGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGATGTAACGAATAAATTAAAAGA</pcr_primer_p1>
		<pcr_primer_p2>GGTGTAAGGCATCAGAAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>AGTGATGTAACGAATAAATTAAAAGATCTAATGATTTCGAAATTCTTATCATACCCCTCCTAGGTGGTTAATATGCTGTTGGCTTGTAACTGCTGGTCAGAAGTTCGTAGAAGTTTGGCTATTGGACAAATATTGACCAGGTTTTTGTCGCAAGTTGCCGAAAAAACTTCTGCATAGCGGCATACAATTTTTGTTTAAATTTTGCTCAAAAAACATTTCTAGGATCAAAACACTTCTAGAAAATAATTTCTGATGCCTTACACC</canonical_amplicon>
		<polymorphic_amplicon>AGTGATGTAACGAATAAATTAAAAGATCTAATGATTTCGAAATTCTTATCATACCCCTCCTAGGTGGTTAATATGCTGTYGGCTTGTAACTGCTGGTCAGAAGTTCGTAGAAGTTTGGCTATTGGACAAATATTGACCAGGTTTTTGTCGCAAGTTGCCGAAAAAACTTCTGCATAGCGGCATACAATTTTTGTTTAAATTTTGCTCAAAAAACATTTCTAGGATCAAAACACTTCTAGAAAATAATTTCTGATGCCTTACACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29744</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>192997</contig_pos>
        <strand></strand>
        <context>cgtagaagtt[T/C]ggctattgga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGTTAATATGCTGTTGGCTTGTAACTGCTGGTCAGAAGTTCGTAGAAGTT</left_flank>
        <right_flank>GGCTATTGGACAAATATTGACCAGGTTTTTGTCGCAAGTTGCCGAAAAAA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCCAGTTAATTTTGTTTTTAGCCCCTCTATGTCTCATCCCTCGGTAGTAAAAGTGTTATTCGAGAAGCTTCATGAATTTTAATCAATTCCGACACTTGGTCTTTGGCTCGAATTCTACATTCAAAACACAACATATGAAAAATATTGGAAAAATATATTTGAATTCATTTTCGGGGGTACTATAGAAACAAGAATCATATTCCCAAAGACGTCATTGCTTACTAAGGAAGAAAAAAAATTGTACTCAATCTCTTGGGATGGACAATGGTCAGAAATCGAGATCATTGTCGCATTCTGTCTGATTGTGTACTAGTCGTAATCCTGTGAAGTTACATATGATTCATAATTTGAAAAAAAAGGAAAAAAATAAGAAATTATTTTAAGTGATGTAACGAATAAATTAAAAGATCTAATGATTTCGAAATTCTTATCATACCCCTCCTAGGTGGTTAATATGCTGTTGGCTTGTAACTGCTGGTCAGAAGTTCGTAGAAGTTTGGCTATTGGACAAATATTGACCAGGTTTTTGTCGCAAGTTGCCGAAAAAACTTCTGCATAGCGGCATACAATTTTTGTTTAAATTTTGCTCAAAAAACATTTCTAGGATCAAAACACTTCTAGAAAATAATTTCTGATGCCTTACACCTTGATCGAGATCATAATAGCAAGTGGGACGTGGAATTTTTAATTTCCTAAAACTGAAACATCCTTCATTTTTGGCATCCTCTATATAACTGATCCGTGATAAATAAATGATGATATGCCGCTTCCGGTTTTGATGAAGTGACATCAGTTTCATCCTGTTTTCTGATTCTGGATCTCTCAAGATTTTTCGAGTTTCAGATTTTCTCAAAACAATTCTAGATTCTGAATTGACGTCAATGCATTTGTTTTCCGGGGGTTAATAAAAAACAAGCTGAATTATGGAAATACGGTCAAAAGAATATGTATTCCAAAGGCAATATTCCGAAAGTTTTTTATAATTTTCGAGGGAACCT</canonical>
            <polymorphic>AATCCAGTTAATTTTGTTTTTAGCCCCTCTATGTCTCATCCCTCGGTAGTAAAAGTGTTATTCGAGAAGCTTCATGAATTTTAATCAATTCCGACACTTGGTCTTTGGCTCGAATTCTACATTCAAAACACAACATATGAAAAATATTGGAAAAATATATTTGAATTCATTTTCGGGGGTACTATAGAAACAAGAATCATATTCCCAAAGACGTCATTGCTTACTAAGGAAGAAAAAAAATTGTACTCAATCTCTTGGGATGGACAATGGTCAGAAATCGAGATCATTGTCGCATTCTGTCTGATTGTGTACTAGTCGTAATCCTGTGAAGTTACATATGATTCATAATTTGAAAAAAAAGGAAAAAAATAAGAAATTATTTTAAGTGATGTAACGAATAAATTAAAAGATCTAATGATTTCGAAATTCTTATCATACCCCTCCTAGGTGGTTAATATGCTGTTGGCTTGTAACTGCTGGTCAGAAGTTCGTAGAAGTTYGGCTATTGGACAAATATTGACCAGGTTTTTGTCGCAAGTTGCCGAAAAAACTTCTGCATAGCGGCATACAATTTTTGTTTAAATTTTGCTCAAAAAACATTTCTAGGATCAAAACACTTCTAGAAAATAATTTCTGATGCCTTACACCTTGATCGAGATCATAATAGCAAGTGGGACGTGGAATTTTTAATTTCCTAAAACTGAAACATCCTTCATTTTTGGCATCCTCTATATAACTGATCCGTGATAAATAAATGATGATATGCCGCTTCCGGTTTTGATGAAGTGACATCAGTTTCATCCTGTTTTCTGATTCTGGATCTCTCAAGATTTTTCGAGTTTCAGATTTTCTCAAAACAATTCTAGATTCTGAATTGACGTCAATGCATTTGTTTTCCGGGGGTTAATAAAAAACAAGCTGAATTATGGAAATACGGTCAAAAGAATATGTATTCCAAAGGCAATATTCCGAAAGTTTTTTATAATTTTCGAGGGAACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCTTATCATACCCCTCCTA</pcr_primer_p1>
		<pcr_primer_p2>TATTATGATCTCGATCAAGGTGT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAATTCTTATCATACCCCTCCTAGGTGGTTAATATGCTGTTGGCTTGTAACTGCTGGTCAGAAGTTCGTAGAAGTTTGGCTATTGGACAAATATTGACCAGGTTTTTGTCGCAAGTTGCCGAAAAAACTTCTGCATAGCGGCATACAATTTTTGTTTAAATTTTGCTCAAAAAACATTTCTAGGATCAAAACACTTCTAGAAAATAATTTCTGATGCCTTACACCTTGATCGAGATCATAATA</canonical_amplicon>
		<polymorphic_amplicon>AAATTCTTATCATACCCCTCCTAGGTGGTTAATATGCTGTTGGCTTGTAACTGCTGGTCAGAAGTTCGTAGAAGTTYGGCTATTGGACAAATATTGACCAGGTTTTTGTCGCAAGTTGCCGAAAAAACTTCTGCATAGCGGCATACAATTTTTGTTTAAATTTTGCTCAAAAAACATTTCTAGGATCAAAACACTTCTAGAAAATAATTTCTGATGCCTTACACCTTGATCGAGATCATAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29745</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>193072</contig_pos>
        <strand></strand>
        <context>catacaattt[T/C]tgtttaaatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTTTTTGTCGCAAGTTGCCGAAAAAACTTCTGCATAGCGGCATACAATTT</left_flank>
        <right_flank>TGTTTAAATTTTGCTCAAAAAACATTTCTAGGATCAAAACACTTCTAGAA</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTTTAATCAATTCCGACACTTGGTCTTTGGCTCGAATTCTACATTCAAAACACAACATATGAAAAATATTGGAAAAATATATTTGAATTCATTTTCGGGGGTACTATAGAAACAAGAATCATATTCCCAAAGACGTCATTGCTTACTAAGGAAGAAAAAAAATTGTACTCAATCTCTTGGGATGGACAATGGTCAGAAATCGAGATCATTGTCGCATTCTGTCTGATTGTGTACTAGTCGTAATCCTGTGAAGTTACATATGATTCATAATTTGAAAAAAAAGGAAAAAAATAAGAAATTATTTTAAGTGATGTAACGAATAAATTAAAAGATCTAATGATTTCGAAATTCTTATCATACCCCTCCTAGGTGGTTAATATGCTGTTGGCTTGTAACTGCTGGTCAGAAGTTCGTAGAAGTTTGGCTATTGGACAAATATTGACCAGGTTTTTGTCGCAAGTTGCCGAAAAAACTTCTGCATAGCGGCATACAATTTTTGTTTAAATTTTGCTCAAAAAACATTTCTAGGATCAAAACACTTCTAGAAAATAATTTCTGATGCCTTACACCTTGATCGAGATCATAATAGCAAGTGGGACGTGGAATTTTTAATTTCCTAAAACTGAAACATCCTTCATTTTTGGCATCCTCTATATAACTGATCCGTGATAAATAAATGATGATATGCCGCTTCCGGTTTTGATGAAGTGACATCAGTTTCATCCTGTTTTCTGATTCTGGATCTCTCAAGATTTTTCGAGTTTCAGATTTTCTCAAAACAATTCTAGATTCTGAATTGACGTCAATGCATTTGTTTTCCGGGGGTTAATAAAAAACAAGCTGAATTATGGAAATACGGTCAAAAGAATATGTATTCCAAAGGCAATATTCCGAAAGTTTTTTATAATTTTCGAGGGAACCTAACTTTGTGATTCTTGGAATTTCCAGTGGGCAAAATCAGAGAACTGAAAACTTGGAACCCTGGGTAAACACATGT</canonical>
            <polymorphic>GAATTTTAATCAATTCCGACACTTGGTCTTTGGCTCGAATTCTACATTCAAAACACAACATATGAAAAATATTGGAAAAATATATTTGAATTCATTTTCGGGGGTACTATAGAAACAAGAATCATATTCCCAAAGACGTCATTGCTTACTAAGGAAGAAAAAAAATTGTACTCAATCTCTTGGGATGGACAATGGTCAGAAATCGAGATCATTGTCGCATTCTGTCTGATTGTGTACTAGTCGTAATCCTGTGAAGTTACATATGATTCATAATTTGAAAAAAAAGGAAAAAAATAAGAAATTATTTTAAGTGATGTAACGAATAAATTAAAAGATCTAATGATTTCGAAATTCTTATCATACCCCTCCTAGGTGGTTAATATGCTGTTGGCTTGTAACTGCTGGTCAGAAGTTCGTAGAAGTTTGGCTATTGGACAAATATTGACCAGGTTTTTGTCGCAAGTTGCCGAAAAAACTTCTGCATAGCGGCATACAATTTYTGTTTAAATTTTGCTCAAAAAACATTTCTAGGATCAAAACACTTCTAGAAAATAATTTCTGATGCCTTACACCTTGATCGAGATCATAATAGCAAGTGGGACGTGGAATTTTTAATTTCCTAAAACTGAAACATCCTTCATTTTTGGCATCCTCTATATAACTGATCCGTGATAAATAAATGATGATATGCCGCTTCCGGTTTTGATGAAGTGACATCAGTTTCATCCTGTTTTCTGATTCTGGATCTCTCAAGATTTTTCGAGTTTCAGATTTTCTCAAAACAATTCTAGATTCTGAATTGACGTCAATGCATTTGTTTTCCGGGGGTTAATAAAAAACAAGCTGAATTATGGAAATACGGTCAAAAGAATATGTATTCCAAAGGCAATATTCCGAAAGTTTTTTATAATTTTCGAGGGAACCTAACTTTGTGATTCTTGGAATTTCCAGTGGGCAAAATCAGAGAACTGAAAACTTGGAACCCTGGGTAAACACATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCTTATCATACCCCTCCTA</pcr_primer_p1>
		<pcr_primer_p2>TATTATGATCTCGATCAAGGTGT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAATTCTTATCATACCCCTCCTAGGTGGTTAATATGCTGTTGGCTTGTAACTGCTGGTCAGAAGTTCGTAGAAGTTTGGCTATTGGACAAATATTGACCAGGTTTTTGTCGCAAGTTGCCGAAAAAACTTCTGCATAGCGGCATACAATTTTTGTTTAAATTTTGCTCAAAAAACATTTCTAGGATCAAAACACTTCTAGAAAATAATTTCTGATGCCTTACACCTTGATCGAGATCATAATA</canonical_amplicon>
		<polymorphic_amplicon>AAATTCTTATCATACCCCTCCTAGGTGGTTAATATGCTGTTGGCTTGTAACTGCTGGTCAGAAGTTCGTAGAAGTTTGGCTATTGGACAAATATTGACCAGGTTTTTGTCGCAAGTTGCCGAAAAAACTTCTGCATAGCGGCATACAATTTYTGTTTAAATTTTGCTCAAAAAACATTTCTAGGATCAAAACACTTCTAGAAAATAATTTCTGATGCCTTACACCTTGATCGAGATCATAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29751</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>279086</contig_pos>
        <strand>+</strand>
        <context>atgaaccaat[A/T]tattacaggt</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCAGGGAGTCGAGAAAATTCAGTTTAAAAACGATAGTGCATGAACCAAT</left_flank>
        <right_flank>TATTACAGGTTTTACGGTGTTTTCCACTGAAAAAATAATTTTTCTTCTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTAAAGGGCTGAAAAGTTGTCCAAATTTTTTTTCAAATTTACTGAAAGTTTCAGAGCGTACTGAACAAATATAGAGCTTCAGTTTTGTGATGGGTAACTTTTTGTACAAATCTAACAAAACCAGATACGCGGTTTTTAAGTTGCAACATTGCATTTCAGTGCTAATTTTTTGCATGTTCAATACTTTTTTTGGTTAAAACTTTCATTCCAGCAAAAAAGATGTTATTTTATGTCTAGTATATTCTGAATTTTGCAAAAGTCTCTTAAATTGACTTTGAGGCCTTTGAAGTTGACTACCGTAAGACTTGTAATAGTAGGGCTGCCTAACTTTCAAATTTAAGCCAAATTATCTTCGTTCCTGTGGCAGGTACAAAAAAGTTGTAAACTGGTGAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACACATTTTCGATATCTTGTCAGGGAGTCGAGAAAATTCAGTTTAAAAACGATAGTGCATGAACCAATCTATTACAGGTTTTACGGTGTTTTCCACTGAAAAAATAATTTTTCTTCTCATTCGATACACTGTCGTTGTTATTTTAATTTTGAAAAGTTATTATTTTTCGGAATATTTTTATCGGAAACTATCGGAATCATGTATATTACCTATGTAAAAAACCAAGATTTAACATACCTGGAATTTTGTTTCATCGCGATCGGATAAATTGCCGTTTCCCCATTAAAAATCGCTTTCCTAAATTGTAATACTGCTTTGTTGTTTGAGCAATATCCTTCTGGGAACAAAAGCACTGGATAAGTATCCTTTTCAGTTTTCTTAGAATGCTCAACAATCGCCTGAAGTAGAGCGTTTCGATTCTTATCACATGCTCGATCCACCAAAAGAAGAGGGGTCAATTTGCCGCCATATTTATACAAATATTTGACGAATCCTCCATGGGACTGGCCTGTGATTGTGTAGCCCACTCCATCATAATCACACCCAGAATAGATGGTCATCACATCGTT</canonical>
            <polymorphic>CTCTAAAGGGCTGAAAAGTTGTCCAAATTTTTTTTCAAATTTACTGAAAGTTTCAGAGCGTACTGAACAAATATAGAGCTTCAGTTTTGTGATGGGTAACTTTTTGTACAAATCTAACAAAACCAGATACGCGGTTTTTAAGTTGCAACATTGCATTTCAGTGCTAATTTTTTGCATGTTCAATACTTTTTTTGGTTAAAACTTTCATTCCAGCAAAAAAGATGTTATTTTATGTCTAGTATATTCTGAATTTTGCAAAAGTCTCTTAAATTGACTTTGAGGCCTTTGAAGTTGACTACCGTAAGACTTGTAATAGTAGGGCTGCCTAACTTTCAAATTTAAGCCAAATTATCTTCGTTCCTGTGGCAGGTACAAAAAAGTTGTAAACTGGTGAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACACATTTTCGATATCTTGTCAGGGAGTCGAGAAAATTCAGTTTAAAAACGATAGTGCATGAACCAATWTATTACAGGTTTTACGGTGTTTTCCACTGAAAAAATAATTTTTCTTCTCATTCGATACACTGTCGTTGTTATTTTAATTTTGAAAAGTTATTATTTTTCGGAATATTTTTATCGGAAACTATCGGAATCATGTATATTACCTATGTAAAAAACCAAGATTTAACATACCTGGAATTTTGTTTCATCGCGATCGGATAAATTGCCGTTTCCCCATTAAAAATCGCTTTCCTAAATTGTAATACTGCTTTGTTGTTTGAGCAATATCCTTCTGGGAACAAAAGCACTGGATAAGTATCCTTTTCAGTTTTCTTAGAATGCTCAACAATCGCCTGAAGTAGAGCGTTTCGATTCTTATCACATGCTCGATCCACCAAAAGAAGAGGGGTCAATTTGCCGCCATATTTATACAAATATTTGACGAATCCTCCATGGGACTGGCCTGTGATTGTGTAGCCCACTCCATCATAATCACACCCAGAATAGATGGTCATCACATCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTTTCATTCCAGCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGTATCGAATGAGAAGAAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>360</pcr_amplicon_size>
		<canonical_amplicon>AACTTTCATTCCAGCAAAAAAGATGTTATTTTATGTCTAGTATATTCTGAATTTTGCAAAAGTCTCTTAAATTGACTTTGAGGCCTTTGAAGTTGACTACCGTAAGACTTGTAATAGTAGGGCTGCCTAACTTTCAAATTTAAGCCAAATTATCTTCGTTCCTGTGGCAGGTACAAAAAAGTTGTAAACTGGTGAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACACATTTTCGATATCTTGTCAGGGAGTCGAGAAAATTCAGTTTAAAAACGATAGTGCATGAACCAATCTATTACAGGTTTTACGGTGTTTTCCACTGAAAAAATAATTTTTCTTCTCATTCGATACA</canonical_amplicon>
		<polymorphic_amplicon>AACTTTCATTCCAGCAAAAAAGATGTTATTTTATGTCTAGTATATTCTGAATTTTGCAAAAGTCTCTTAAATTGACTTTGAGGCCTTTGAAGTTGACTACCGTAAGACTTGTAATAGTAGGGCTGCCTAACTTTCAAATTTAAGCCAAATTATCTTCGTTCCTGTGGCAGGTACAAAAAAGTTGTAAACTGGTGAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACACATTTTCGATATCTTGTCAGGGAGTCGAGAAAATTCAGTTTAAAAACGATAGTGCATGAACCAATWTATTACAGGTTTTACGGTGTTTTCCACTGAAAAAATAATTTTTCTTCTCATTCGATACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29752</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>279104</contig_pos>
        <strand>+</strand>
        <context>ggttttacgg[G/T]GTTTTCCACT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCAGTTTAAAAACGATAGTGCATGAACCAATCTATTACAGGTTTTACGG</left_flank>
        <right_flank>GTTTTCCACTGAAAAAATAATTTTTCTTCTCATTCGATACACTGTCGTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTCCAAATTTTTTTTCAAATTTACTGAAAGTTTCAGAGCGTACTGAACAAATATAGAGCTTCAGTTTTGTGATGGGTAACTTTTTGTACAAATCTAACAAAACCAGATACGCGGTTTTTAAGTTGCAACATTGCATTTCAGTGCTAATTTTTTGCATGTTCAATACTTTTTTTGGTTAAAACTTTCATTCCAGCAAAAAAGATGTTATTTTATGTCTAGTATATTCTGAATTTTGCAAAAGTCTCTTAAATTGACTTTGAGGCCTTTGAAGTTGACTACCGTAAGACTTGTAATAGTAGGGCTGCCTAACTTTCAAATTTAAGCCAAATTATCTTCGTTCCTGTGGCAGGTACAAAAAAGTTGTAAACTGGTGAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACACATTTTCGATATCTTGTCAGGGAGTCGAGAAAATTCAGTTTAAAAACGATAGTGCATGAACCAATCTATTACAGGTTTTACGGTGTTTTCCACTGAAAAAATAATTTTTCTTCTCATTCGATACACTGTCGTTGTTATTTTAATTTTGAAAAGTTATTATTTTTCGGAATATTTTTATCGGAAACTATCGGAATCATGTATATTACCTATGTAAAAAACCAAGATTTAACATACCTGGAATTTTGTTTCATCGCGATCGGATAAATTGCCGTTTCCCCATTAAAAATCGCTTTCCTAAATTGTAATACTGCTTTGTTGTTTGAGCAATATCCTTCTGGGAACAAAAGCACTGGATAAGTATCCTTTTCAGTTTTCTTAGAATGCTCAACAATCGCCTGAAGTAGAGCGTTTCGATTCTTATCACATGCTCGATCCACCAAAAGAAGAGGGGTCAATTTGCCGCCATATTTATACAAATATTTGACGAATCCTCCATGGGACTGGCCTGTGATTGTGTAGCCCACTCCATCATAATCACACCCAGAATAGATGGTCATCACATCGTTGGCGCTAAGATGGTTGGC</canonical>
            <polymorphic>TTGTCCAAATTTTTTTTCAAATTTACTGAAAGTTTCAGAGCGTACTGAACAAATATAGAGCTTCAGTTTTGTGATGGGTAACTTTTTGTACAAATCTAACAAAACCAGATACGCGGTTTTTAAGTTGCAACATTGCATTTCAGTGCTAATTTTTTGCATGTTCAATACTTTTTTTGGTTAAAACTTTCATTCCAGCAAAAAAGATGTTATTTTATGTCTAGTATATTCTGAATTTTGCAAAAGTCTCTTAAATTGACTTTGAGGCCTTTGAAGTTGACTACCGTAAGACTTGTAATAGTAGGGCTGCCTAACTTTCAAATTTAAGCCAAATTATCTTCGTTCCTGTGGCAGGTACAAAAAAGTTGTAAACTGGTGAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACACATTTTCGATATCTTGTCAGGGAGTCGAGAAAATTCAGTTTAAAAACGATAGTGCATGAACCAATCTATTACAGGTTTTACGGKGTTTTCCACTGAAAAAATAATTTTTCTTCTCATTCGATACACTGTCGTTGTTATTTTAATTTTGAAAAGTTATTATTTTTCGGAATATTTTTATCGGAAACTATCGGAATCATGTATATTACCTATGTAAAAAACCAAGATTTAACATACCTGGAATTTTGTTTCATCGCGATCGGATAAATTGCCGTTTCCCCATTAAAAATCGCTTTCCTAAATTGTAATACTGCTTTGTTGTTTGAGCAATATCCTTCTGGGAACAAAAGCACTGGATAAGTATCCTTTTCAGTTTTCTTAGAATGCTCAACAATCGCCTGAAGTAGAGCGTTTCGATTCTTATCACATGCTCGATCCACCAAAAGAAGAGGGGTCAATTTGCCGCCATATTTATACAAATATTTGACGAATCCTCCATGGGACTGGCCTGTGATTGTGTAGCCCACTCCATCATAATCACACCCAGAATAGATGGTCATCACATCGTTGGCGCTAAGATGGTTGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>457 282 216 45</canonical_bands>
                <polymorphic_bands>457 282 261</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>224 202 74 74 73 72 54 33 31 28 25 21 20 20 14 13 7 7 6 2</canonical_bands>
                <polymorphic_bands>224 202 74 74 73 72 54 38 33 28 25 21 20 20 14 13 7 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTTTCATTCCAGCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CGATAAAAATATTCCGAAAAATAA</pcr_primer_p2>
		<pcr_amplicon_size>415</pcr_amplicon_size>
		<canonical_amplicon>AACTTTCATTCCAGCAAAAAAGATGTTATTTTATGTCTAGTATATTCTGAATTTTGCAAAAGTCTCTTAAATTGACTTTGAGGCCTTTGAAGTTGACTACCGTAAGACTTGTAATAGTAGGGCTGCCTAACTTTCAAATTTAAGCCAAATTATCTTCGTTCCTGTGGCAGGTACAAAAAAGTTGTAAACTGGTGAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACACATTTTCGATATCTTGTCAGGGAGTCGAGAAAATTCAGTTTAAAAACGATAGTGCATGAACCAATCTATTACAGGTTTTACGGTGTTTTCCACTGAAAAAATAATTTTTCTTCTCATTCGATACACTGTCGTTGTTATTTTAATTTTGAAAAGTTATTATTTTTCGGAATATTTTTATCG</canonical_amplicon>
		<polymorphic_amplicon>AACTTTCATTCCAGCAAAAAAGATGTTATTTTATGTCTAGTATATTCTGAATTTTGCAAAAGTCTCTTAAATTGACTTTGAGGCCTTTGAAGTTGACTACCGTAAGACTTGTAATAGTAGGGCTGCCTAACTTTCAAATTTAAGCCAAATTATCTTCGTTCCTGTGGCAGGTACAAAAAAGTTGTAAACTGGTGAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACACATTTTCGATATCTTGTCAGGGAGTCGAGAAAATTCAGTTTAAAAACGATAGTGCATGAACCAATCTATTACAGGTTTTACGGKGTTTTCCACTGAAAAAATAATTTTTCTTCTCATTCGATACACTGTCGTTGTTATTTTAATTTTGAAAAGTTATTATTTTTCGGAATATTTTTATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29753</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>279156</contig_pos>
        <strand>+</strand>
        <context>CTGTCGTTGT[C/T]ATTTTAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCCACTGAAAAAATAATTTTTCTTCTCATTCGATACACTGTCGTTGT</left_flank>
        <right_flank>ATTTTAATTTTGAAAAGTTATTATTTTTCGGAATATTTTTATCGGAAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATAGAGCTTCAGTTTTGTGATGGGTAACTTTTTGTACAAATCTAACAAAACCAGATACGCGGTTTTTAAGTTGCAACATTGCATTTCAGTGCTAATTTTTTGCATGTTCAATACTTTTTTTGGTTAAAACTTTCATTCCAGCAAAAAAGATGTTATTTTATGTCTAGTATATTCTGAATTTTGCAAAAGTCTCTTAAATTGACTTTGAGGCCTTTGAAGTTGACTACCGTAAGACTTGTAATAGTAGGGCTGCCTAACTTTCAAATTTAAGCCAAATTATCTTCGTTCCTGTGGCAGGTACAAAAAAGTTGTAAACTGGTGAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACACATTTTCGATATCTTGTCAGGGAGTCGAGAAAATTCAGTTTAAAAACGATAGTGCATGAACCAATCTATTACAGGTTTTACGGTGTTTTCCACTGAAAAAATAATTTTTCTTCTCATTCGATACACTGTCGTTGTTATTTTAATTTTGAAAAGTTATTATTTTTCGGAATATTTTTATCGGAAACTATCGGAATCATGTATATTACCTATGTAAAAAACCAAGATTTAACATACCTGGAATTTTGTTTCATCGCGATCGGATAAATTGCCGTTTCCCCATTAAAAATCGCTTTCCTAAATTGTAATACTGCTTTGTTGTTTGAGCAATATCCTTCTGGGAACAAAAGCACTGGATAAGTATCCTTTTCAGTTTTCTTAGAATGCTCAACAATCGCCTGAAGTAGAGCGTTTCGATTCTTATCACATGCTCGATCCACCAAAAGAAGAGGGGTCAATTTGCCGCCATATTTATACAAATATTTGACGAATCCTCCATGGGACTGGCCTGTGATTGTGTAGCCCACTCCATCATAATCACACCCAGAATAGATGGTCATCACATCGTTGGCGCTAAGATGGTTGGCGACTGCCACTCCTGGAAAAGCAATAAAACTGTCAAAACTGTCCGAATCGAGA</canonical>
            <polymorphic>ATATAGAGCTTCAGTTTTGTGATGGGTAACTTTTTGTACAAATCTAACAAAACCAGATACGCGGTTTTTAAGTTGCAACATTGCATTTCAGTGCTAATTTTTTGCATGTTCAATACTTTTTTTGGTTAAAACTTTCATTCCAGCAAAAAAGATGTTATTTTATGTCTAGTATATTCTGAATTTTGCAAAAGTCTCTTAAATTGACTTTGAGGCCTTTGAAGTTGACTACCGTAAGACTTGTAATAGTAGGGCTGCCTAACTTTCAAATTTAAGCCAAATTATCTTCGTTCCTGTGGCAGGTACAAAAAAGTTGTAAACTGGTGAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACACATTTTCGATATCTTGTCAGGGAGTCGAGAAAATTCAGTTTAAAAACGATAGTGCATGAACCAATCTATTACAGGTTTTACGGTGTTTTCCACTGAAAAAATAATTTTTCTTCTCATTCGATACACTGTCGTTGTYATTTTAATTTTGAAAAGTTATTATTTTTCGGAATATTTTTATCGGAAACTATCGGAATCATGTATATTACCTATGTAAAAAACCAAGATTTAACATACCTGGAATTTTGTTTCATCGCGATCGGATAAATTGCCGTTTCCCCATTAAAAATCGCTTTCCTAAATTGTAATACTGCTTTGTTGTTTGAGCAATATCCTTCTGGGAACAAAAGCACTGGATAAGTATCCTTTTCAGTTTTCTTAGAATGCTCAACAATCGCCTGAAGTAGAGCGTTTCGATTCTTATCACATGCTCGATCCACCAAAAGAAGAGGGGTCAATTTGCCGCCATATTTATACAAATATTTGACGAATCCTCCATGGGACTGGCCTGTGATTGTGTAGCCCACTCCATCATAATCACACCCAGAATAGATGGTCATCACATCGTTGGCGCTAAGATGGTTGGCGACTGCCACTCCTGGAAAAGCAATAAAACTGTCAAAACTGTCCGAATCGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTTTCATTCCAGCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAATTCCAGGTATGTTAAATC</pcr_primer_p2>
		<pcr_amplicon_size>480</pcr_amplicon_size>
		<canonical_amplicon>AACTTTCATTCCAGCAAAAAAGATGTTATTTTATGTCTAGTATATTCTGAATTTTGCAAAAGTCTCTTAAATTGACTTTGAGGCCTTTGAAGTTGACTACCGTAAGACTTGTAATAGTAGGGCTGCCTAACTTTCAAATTTAAGCCAAATTATCTTCGTTCCTGTGGCAGGTACAAAAAAGTTGTAAACTGGTGAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACACATTTTCGATATCTTGTCAGGGAGTCGAGAAAATTCAGTTTAAAAACGATAGTGCATGAACCAATCTATTACAGGTTTTACGGTGTTTTCCACTGAAAAAATAATTTTTCTTCTCATTCGATACACTGTCGTTGTTATTTTAATTTTGAAAAGTTATTATTTTTCGGAATATTTTTATCGGAAACTATCGGAATCATGTATATTACCTATGTAAAAAACCAAGATTTAACATACCTGGAATTTTG</canonical_amplicon>
		<polymorphic_amplicon>AACTTTCATTCCAGCAAAAAAGATGTTATTTTATGTCTAGTATATTCTGAATTTTGCAAAAGTCTCTTAAATTGACTTTGAGGCCTTTGAAGTTGACTACCGTAAGACTTGTAATAGTAGGGCTGCCTAACTTTCAAATTTAAGCCAAATTATCTTCGTTCCTGTGGCAGGTACAAAAAAGTTGTAAACTGGTGAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACACATTTTCGATATCTTGTCAGGGAGTCGAGAAAATTCAGTTTAAAAACGATAGTGCATGAACCAATCTATTACAGGTTTTACGGTGTTTTCCACTGAAAAAATAATTTTTCTTCTCATTCGATACACTGTCGTTGTYATTTTAATTTTGAAAAGTTATTATTTTTCGGAATATTTTTATCGGAAACTATCGGAATCATGTATATTACCTATGTAAAAAACCAAGATTTAACATACCTGGAATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29754</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>279205</contig_pos>
        <strand>+</strand>
        <context>TTATCGGAAA[C/T]TATCGGAATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATTTTAATTTTGAAAAGTTATTATTTTTCGGAATATTTTTATCGGAAA</left_flank>
        <right_flank>TATCGGAATCATGTATATTACCTATGTAAAAAACCAAGATTTAACATACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACCAGATACGCGGTTTTTAAGTTGCAACATTGCATTTCAGTGCTAATTTTTTGCATGTTCAATACTTTTTTTGGTTAAAACTTTCATTCCAGCAAAAAAGATGTTATTTTATGTCTAGTATATTCTGAATTTTGCAAAAGTCTCTTAAATTGACTTTGAGGCCTTTGAAGTTGACTACCGTAAGACTTGTAATAGTAGGGCTGCCTAACTTTCAAATTTAAGCCAAATTATCTTCGTTCCTGTGGCAGGTACAAAAAAGTTGTAAACTGGTGAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACACATTTTCGATATCTTGTCAGGGAGTCGAGAAAATTCAGTTTAAAAACGATAGTGCATGAACCAATCTATTACAGGTTTTACGGTGTTTTCCACTGAAAAAATAATTTTTCTTCTCATTCGATACACTGTCGTTGTTATTTTAATTTTGAAAAGTTATTATTTTTCGGAATATTTTTATCGGAAACTATCGGAATCATGTATATTACCTATGTAAAAAACCAAGATTTAACATACCTGGAATTTTGTTTCATCGCGATCGGATAAATTGCCGTTTCCCCATTAAAAATCGCTTTCCTAAATTGTAATACTGCTTTGTTGTTTGAGCAATATCCTTCTGGGAACAAAAGCACTGGATAAGTATCCTTTTCAGTTTTCTTAGAATGCTCAACAATCGCCTGAAGTAGAGCGTTTCGATTCTTATCACATGCTCGATCCACCAAAAGAAGAGGGGTCAATTTGCCGCCATATTTATACAAATATTTGACGAATCCTCCATGGGACTGGCCTGTGATTGTGTAGCCCACTCCATCATAATCACACCCAGAATAGATGGTCATCACATCGTTGGCGCTAAGATGGTTGGCGACTGCCACTCCTGGAAAAGCAATAAAACTGTCAAAACTGTCCGAATCGAGATAGGAAAGGAATCACCTGGGACTCTTGGACGATTTTTCTTATCATGAAA</canonical>
            <polymorphic>AAACCAGATACGCGGTTTTTAAGTTGCAACATTGCATTTCAGTGCTAATTTTTTGCATGTTCAATACTTTTTTTGGTTAAAACTTTCATTCCAGCAAAAAAGATGTTATTTTATGTCTAGTATATTCTGAATTTTGCAAAAGTCTCTTAAATTGACTTTGAGGCCTTTGAAGTTGACTACCGTAAGACTTGTAATAGTAGGGCTGCCTAACTTTCAAATTTAAGCCAAATTATCTTCGTTCCTGTGGCAGGTACAAAAAAGTTGTAAACTGGTGAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACACATTTTCGATATCTTGTCAGGGAGTCGAGAAAATTCAGTTTAAAAACGATAGTGCATGAACCAATCTATTACAGGTTTTACGGTGTTTTCCACTGAAAAAATAATTTTTCTTCTCATTCGATACACTGTCGTTGTTATTTTAATTTTGAAAAGTTATTATTTTTCGGAATATTTTTATCGGAAAYTATCGGAATCATGTATATTACCTATGTAAAAAACCAAGATTTAACATACCTGGAATTTTGTTTCATCGCGATCGGATAAATTGCCGTTTCCCCATTAAAAATCGCTTTCCTAAATTGTAATACTGCTTTGTTGTTTGAGCAATATCCTTCTGGGAACAAAAGCACTGGATAAGTATCCTTTTCAGTTTTCTTAGAATGCTCAACAATCGCCTGAAGTAGAGCGTTTCGATTCTTATCACATGCTCGATCCACCAAAAGAAGAGGGGTCAATTTGCCGCCATATTTATACAAATATTTGACGAATCCTCCATGGGACTGGCCTGTGATTGTGTAGCCCACTCCATCATAATCACACCCAGAATAGATGGTCATCACATCGTTGGCGCTAAGATGGTTGGCGACTGCCACTCCTGGAAAAGCAATAAAACTGTCAAAACTGTCCGAATCGAGATAGGAAAGGAATCACCTGGGACTCTTGGACGATTTTTCTTATCATGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCATTCGATACACTGTCGT</pcr_primer_p1>
		<pcr_primer_p2>ATACTTATCCAGTGCTTTTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTCATTCGATACACTGTCGTTGTTATTTTAATTTTGAAAAGTTATTATTTTTCGGAATATTTTTATCGGAAACTATCGGAATCATGTATATTACCTATGTAAAAAACCAAGATTTAACATACCTGGAATTTTGTTTCATCGCGATCGGATAAATTGCCGTTTCCCCATTAAAAATCGCTTTCCTAAATTGTAATACTGCTTTGTTGTTTGAGCAATATCCTTCTGGGAACAAAAGCACTGGATAAGTAT</canonical_amplicon>
		<polymorphic_amplicon>TCTCATTCGATACACTGTCGTTGTTATTTTAATTTTGAAAAGTTATTATTTTTCGGAATATTTTTATCGGAAAYTATCGGAATCATGTATATTACCTATGTAAAAAACCAAGATTTAACATACCTGGAATTTTGTTTCATCGCGATCGGATAAATTGCCGTTTCCCCATTAAAAATCGCTTTCCTAAATTGTAATACTGCTTTGTTGTTTGAGCAATATCCTTCTGGGAACAAAAGCACTGGATAAGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29755</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>289603</contig_pos>
        <strand>+</strand>
        <context>TACTCTTCTA[A/T]MTATCAATTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAATTTTTTAGTTGTCGTACCCAGTTGATATCGTTTTTGTACTCTTCTA</left_flank>
        <right_flank>ATATCAATTATTGGAATTTAAGGGACTTGTCACTAACCTGCGATATAGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATGACAGTCGACCTCCAGACACCTGAAAATAGTCAAAATGACCGGTAATCAACTGAGAATTCAGTTTTGAATATTATACTACATCTGTTGTTAATTCCTCATATTCGAATCTCATTGTTTTGTATTATTTCAAAATTTTGATATTTCTGTAATTATGTGACGCGCAAACTGCAACAAAAATGAACGAAAAATTTATTTCAACTGTTTAAGAACACATTCCAACAACTTTTTAGTCTGCTTGTCTGCCAAATTCTTGTTCATAAACTCTGGGAAAATCGCCGTCATTTTGATACTAGATCGAACTTCTGGAGACCCATCTTTCTGACTTGAACCCGGTTGTGTAAACTGAAATATAATTTTGAATTCTACATGTAACAAAAAGTCTCTTACGTGATAGATCATAAATTTCCTTCCAGAATTTCCGATGAAGTCACAACTGAATCGATTGGAATTTTTTAGTTGTCGTACCCAGTTGATATCGTTTTTGTACTCTTCTAAATATCAATTATTGGAATTTAAGGGACTTGTCACTAACCTGCGATATAGGTTATTTCCTTTTGTACATCGTCAAATTGAATTCTATACGCGTACATCTCTAAGAAAAATTCGGATGGCTTTAGAAACTTTGCTAACTTTTGCTCTTGATCTTTGGAACCTGAAATATTTGAAAATGCCACTTCACTAATTTTGCCACCAACCTATTTCTAGCGATTCTACGAGTTTAATCGAATTAGGTTTCACGATTTTCTCCAAACACTGATTGAATAGGGGAAGTGTTGATATTCGAGCATTTACTATGCTTATGGAACACAGCTCTTGAATCAATGAGTTGATTTGTTTTTTTCCATAGGAGAGAAGAATGTCCATTTTTTGGGTCATTATCTAAAAATTTGGAAAATGTACTTGGTTTCACAAAAAATGAGATCTACCTTTTCATCCATGGTCACTTTCGTGAATACTGAAGAGTTGATAGAGATTGTGGAAAGTGCACTTCTCCA</canonical>
            <polymorphic>ACATGACAGTCGACCTCCAGACACCTGAAAATAGTCAAAATGACCGGTAATCAACTGAGAATTCAGTTTTGAATATTATACTACATCTGTTGTTAATTCCTCATATTCGAATCTCATTGTTTTGTATTATTTCAAAATTTTGATATTTCTGTAATTATGTGACGCGCAAACTGCAACAAAAATGAACGAAAAATTTATTTCAACTGTTTAAGAACACATTCCAACAACTTTTTAGTCTGCTTGTCTGCCAAATTCTTGTTCATAAACTCTGGGAAAATCGCCGTCATTTTGATACTAGATCGAACTTCTGGAGACCCATCTTTCTGACTTGAACCCGGTTGTGTAAACTGAAATATAATTTTGAATTCTACATGTAACAAAAAGTCTCTTACGTGATAGATCATAAATTTCCTTCCAGAATTTCCGATGAAGTCACAACTGAATCGATTGGAATTTTTTAGTTGTCGTACCCAGTTGATATCGTTTTTGTACTCTTCTAWATATCAATTATTGGAATTTAAGGGACTTGTCACTAACCTGCGATATAGGTTATTTCCTTTTGTACATCGTCAAATTGAATTCTATACGCGTACATCTCTAAGAAAAATTCGGATGGCTTTAGAAACTTTGCTAACTTTTGCTCTTGATCTTTGGAACCTGAAATATTTGAAAATGCCACTTCACTAATTTTGCCACCAACCTATTTCTAGCGATTCTACGAGTTTAATCGAATTAGGTTTCACGATTTTCTCCAAACACTGATTGAATAGGGGAAGTGTTGATATTCGAGCATTTACTATGCTTATGGAACACAGCTCTTGAATCAATGAGTTGATTTGTTTTTTTCCATAGGAGAGAAGAATGTCCATTTTTTGGGTCATTATCTAAAAATTTGGAAAATGTACTTGGTTTCACAAAAAATGAGATCTACCTTTTCATCCATGGTCACTTTCGTGAATACTGAAGAGTTGATAGAGATTGTGGAAAGTGCACTTCTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATAAATTTCCTTCCAGAATTT</pcr_primer_p1>
		<pcr_primer_p2>CAAAGATCAAGAGCAAAAGTTAG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TCATAAATTTCCTTCCAGAATTTCCGATGAAGTCACAACTGAATCGATTGGAATTTTTTAGTTGTCGTACCCAGTTGATATCGTTTTTGTACTCTTCTAAATATCAATTATTGGAATTTAAGGGACTTGTCACTAACCTGCGATATAGGTTATTTCCTTTTGTACATCGTCAAATTGAATTCTATACGCGTACATCTCTAAGAAAAATTCGGATGGCTTTAGAAACTTTGCTAACTTTTGCTCTTGATCTTTG</canonical_amplicon>
		<polymorphic_amplicon>TCATAAATTTCCTTCCAGAATTTCCGATGAAGTCACAACTGAATCGATTGGAATTTTTTAGTTGTCGTACCCAGTTGATATCGTTTTTGTACTCTTCTAWATATCAATTATTGGAATTTAAGGGACTTGTCACTAACCTGCGATATAGGTTATTTCCTTTTGTACATCGTCAAATTGAATTCTATACGCGTACATCTCTAAGAAAAATTCGGATGGCTTTAGAAACTTTGCTAACTTTTGCTCTTGATCTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29756</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>289604</contig_pos>
        <strand>+</strand>
        <context>ACTCTTCTAW[A/C]TATCAATTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAATTTTTTAGTTGTCGTACCCAGTTGATATCGTTTTTGTACTCTTCTAA</left_flank>
        <right_flank>TATCAATTATTGGAATTTAAGGGACTTGTCACTAACCTGCGATATAGGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGACAGTCGACCTCCAGACACCTGAAAATAGTCAAAATGACCGGTAATCAACTGAGAATTCAGTTTTGAATATTATACTACATCTGTTGTTAATTCCTCATATTCGAATCTCATTGTTTTGTATTATTTCAAAATTTTGATATTTCTGTAATTATGTGACGCGCAAACTGCAACAAAAATGAACGAAAAATTTATTTCAACTGTTTAAGAACACATTCCAACAACTTTTTAGTCTGCTTGTCTGCCAAATTCTTGTTCATAAACTCTGGGAAAATCGCCGTCATTTTGATACTAGATCGAACTTCTGGAGACCCATCTTTCTGACTTGAACCCGGTTGTGTAAACTGAAATATAATTTTGAATTCTACATGTAACAAAAAGTCTCTTACGTGATAGATCATAAATTTCCTTCCAGAATTTCCGATGAAGTCACAACTGAATCGATTGGAATTTTTTAGTTGTCGTACCCAGTTGATATCGTTTTTGTACTCTTCTAAATATCAATTATTGGAATTTAAGGGACTTGTCACTAACCTGCGATATAGGTTATTTCCTTTTGTACATCGTCAAATTGAATTCTATACGCGTACATCTCTAAGAAAAATTCGGATGGCTTTAGAAACTTTGCTAACTTTTGCTCTTGATCTTTGGAACCTGAAATATTTGAAAATGCCACTTCACTAATTTTGCCACCAACCTATTTCTAGCGATTCTACGAGTTTAATCGAATTAGGTTTCACGATTTTCTCCAAACACTGATTGAATAGGGGAAGTGTTGATATTCGAGCATTTACTATGCTTATGGAACACAGCTCTTGAATCAATGAGTTGATTTGTTTTTTTCCATAGGAGAGAAGAATGTCCATTTTTTGGGTCATTATCTAAAAATTTGGAAAATGTACTTGGTTTCACAAAAAATGAGATCTACCTTTTCATCCATGGTCACTTTCGTGAATACTGAAGAGTTGATAGAGATTGTGGAAAGTGCACTTCTCCAT</canonical>
            <polymorphic>CATGACAGTCGACCTCCAGACACCTGAAAATAGTCAAAATGACCGGTAATCAACTGAGAATTCAGTTTTGAATATTATACTACATCTGTTGTTAATTCCTCATATTCGAATCTCATTGTTTTGTATTATTTCAAAATTTTGATATTTCTGTAATTATGTGACGCGCAAACTGCAACAAAAATGAACGAAAAATTTATTTCAACTGTTTAAGAACACATTCCAACAACTTTTTAGTCTGCTTGTCTGCCAAATTCTTGTTCATAAACTCTGGGAAAATCGCCGTCATTTTGATACTAGATCGAACTTCTGGAGACCCATCTTTCTGACTTGAACCCGGTTGTGTAAACTGAAATATAATTTTGAATTCTACATGTAACAAAAAGTCTCTTACGTGATAGATCATAAATTTCCTTCCAGAATTTCCGATGAAGTCACAACTGAATCGATTGGAATTTTTTAGTTGTCGTACCCAGTTGATATCGTTTTTGTACTCTTCTAAMTATCAATTATTGGAATTTAAGGGACTTGTCACTAACCTGCGATATAGGTTATTTCCTTTTGTACATCGTCAAATTGAATTCTATACGCGTACATCTCTAAGAAAAATTCGGATGGCTTTAGAAACTTTGCTAACTTTTGCTCTTGATCTTTGGAACCTGAAATATTTGAAAATGCCACTTCACTAATTTTGCCACCAACCTATTTCTAGCGATTCTACGAGTTTAATCGAATTAGGTTTCACGATTTTCTCCAAACACTGATTGAATAGGGGAAGTGTTGATATTCGAGCATTTACTATGCTTATGGAACACAGCTCTTGAATCAATGAGTTGATTTGTTTTTTTCCATAGGAGAGAAGAATGTCCATTTTTTGGGTCATTATCTAAAAATTTGGAAAATGTACTTGGTTTCACAAAAAATGAGATCTACCTTTTCATCCATGGTCACTTTCGTGAATACTGAAGAGTTGATAGAGATTGTGGAAAGTGCACTTCTCCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATAAATTTCCTTCCAGAATTT</pcr_primer_p1>
		<pcr_primer_p2>CAAAGATCAAGAGCAAAAGTTAG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TCATAAATTTCCTTCCAGAATTTCCGATGAAGTCACAACTGAATCGATTGGAATTTTTTAGTTGTCGTACCCAGTTGATATCGTTTTTGTACTCTTCTAAATATCAATTATTGGAATTTAAGGGACTTGTCACTAACCTGCGATATAGGTTATTTCCTTTTGTACATCGTCAAATTGAATTCTATACGCGTACATCTCTAAGAAAAATTCGGATGGCTTTAGAAACTTTGCTAACTTTTGCTCTTGATCTTTG</canonical_amplicon>
		<polymorphic_amplicon>TCATAAATTTCCTTCCAGAATTTCCGATGAAGTCACAACTGAATCGATTGGAATTTTTTAGTTGTCGTACCCAGTTGATATCGTTTTTGTACTCTTCTAAMTATCAATTATTGGAATTTAAGGGACTTGTCACTAACCTGCGATATAGGTTATTTCCTTTTGTACATCGTCAAATTGAATTCTATACGCGTACATCTCTAAGAAAAATTCGGATGGCTTTAGAAACTTTGCTAACTTTTGCTCTTGATCTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29757</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>289630</contig_pos>
        <strand>+</strand>
        <context>TTTAAGGGAC[C/T]WGTCACTAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATATCGTTTTTGTACTCTTCTAAATATCAATTATTGGAATTTAAGGGAC</left_flank>
        <right_flank>TGTCACTAACCTGCGATATAGGTTATTTCCTTTTGTACATCGTCAAATTG</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATAGTCAAAATGACCGGTAATCAACTGAGAATTCAGTTTTGAATATTATACTACATCTGTTGTTAATTCCTCATATTCGAATCTCATTGTTTTGTATTATTTCAAAATTTTGATATTTCTGTAATTATGTGACGCGCAAACTGCAACAAAAATGAACGAAAAATTTATTTCAACTGTTTAAGAACACATTCCAACAACTTTTTAGTCTGCTTGTCTGCCAAATTCTTGTTCATAAACTCTGGGAAAATCGCCGTCATTTTGATACTAGATCGAACTTCTGGAGACCCATCTTTCTGACTTGAACCCGGTTGTGTAAACTGAAATATAATTTTGAATTCTACATGTAACAAAAAGTCTCTTACGTGATAGATCATAAATTTCCTTCCAGAATTTCCGATGAAGTCACAACTGAATCGATTGGAATTTTTTAGTTGTCGTACCCAGTTGATATCGTTTTTGTACTCTTCTAAATATCAATTATTGGAATTTAAGGGACTTGTCACTAACCTGCGATATAGGTTATTTCCTTTTGTACATCGTCAAATTGAATTCTATACGCGTACATCTCTAAGAAAAATTCGGATGGCTTTAGAAACTTTGCTAACTTTTGCTCTTGATCTTTGGAACCTGAAATATTTGAAAATGCCACTTCACTAATTTTGCCACCAACCTATTTCTAGCGATTCTACGAGTTTAATCGAATTAGGTTTCACGATTTTCTCCAAACACTGATTGAATAGGGGAAGTGTTGATATTCGAGCATTTACTATGCTTATGGAACACAGCTCTTGAATCAATGAGTTGATTTGTTTTTTTCCATAGGAGAGAAGAATGTCCATTTTTTGGGTCATTATCTAAAAATTTGGAAAATGTACTTGGTTTCACAAAAAATGAGATCTACCTTTTCATCCATGGTCACTTTCGTGAATACTGAAGAGTTGATAGAGATTGTGGAAAGTGCACTTCTCCATGAGCTGATCGAAAATCGAGAGTCTGA</canonical>
            <polymorphic>AAAATAGTCAAAATGACCGGTAATCAACTGAGAATTCAGTTTTGAATATTATACTACATCTGTTGTTAATTCCTCATATTCGAATCTCATTGTTTTGTATTATTTCAAAATTTTGATATTTCTGTAATTATGTGACGCGCAAACTGCAACAAAAATGAACGAAAAATTTATTTCAACTGTTTAAGAACACATTCCAACAACTTTTTAGTCTGCTTGTCTGCCAAATTCTTGTTCATAAACTCTGGGAAAATCGCCGTCATTTTGATACTAGATCGAACTTCTGGAGACCCATCTTTCTGACTTGAACCCGGTTGTGTAAACTGAAATATAATTTTGAATTCTACATGTAACAAAAAGTCTCTTACGTGATAGATCATAAATTTCCTTCCAGAATTTCCGATGAAGTCACAACTGAATCGATTGGAATTTTTTAGTTGTCGTACCCAGTTGATATCGTTTTTGTACTCTTCTAAATATCAATTATTGGAATTTAAGGGACYTGTCACTAACCTGCGATATAGGTTATTTCCTTTTGTACATCGTCAAATTGAATTCTATACGCGTACATCTCTAAGAAAAATTCGGATGGCTTTAGAAACTTTGCTAACTTTTGCTCTTGATCTTTGGAACCTGAAATATTTGAAAATGCCACTTCACTAATTTTGCCACCAACCTATTTCTAGCGATTCTACGAGTTTAATCGAATTAGGTTTCACGATTTTCTCCAAACACTGATTGAATAGGGGAAGTGTTGATATTCGAGCATTTACTATGCTTATGGAACACAGCTCTTGAATCAATGAGTTGATTTGTTTTTTTCCATAGGAGAGAAGAATGTCCATTTTTTGGGTCATTATCTAAAAATTTGGAAAATGTACTTGGTTTCACAAAAAATGAGATCTACCTTTTCATCCATGGTCACTTTCGTGAATACTGAAGAGTTGATAGAGATTGTGGAAAGTGCACTTCTCCATGAGCTGATCGAAAATCGAGAGTCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGTTGATATCGTTTTTGTACT</pcr_primer_p1>
		<pcr_primer_p2>CGTAGAATCGCTAGAAATAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAGTTGATATCGTTTTTGTACTCTTCTAAATATCAATTATTGGAATTTAAGGGACTTGTCACTAACCTGCGATATAGGTTATTTCCTTTTGTACATCGTCAAATTGAATTCTATACGCGTACATCTCTAAGAAAAATTCGGATGGCTTTAGAAACTTTGCTAACTTTTGCTCTTGATCTTTGGAACCTGAAATATTTGAAAATGCCACTTCACTAATTTTGCCACCAACCTATTTCTAGCGATTCTACG</canonical_amplicon>
		<polymorphic_amplicon>CCAGTTGATATCGTTTTTGTACTCTTCTAAATATCAATTATTGGAATTTAAGGGACYTGTCACTAACCTGCGATATAGGTTATTTCCTTTTGTACATCGTCAAATTGAATTCTATACGCGTACATCTCTAAGAAAAATTCGGATGGCTTTAGAAACTTTGCTAACTTTTGCTCTTGATCTTTGGAACCTGAAATATTTGAAAATGCCACTTCACTAATTTTGCCACCAACCTATTTCTAGCGATTCTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29758</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>289631</contig_pos>
        <strand>+</strand>
        <context>TTAAGGGACY[A/T]GTCACTAACC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATATCGTTTTTGTACTCTTCTAAATATCAATTATTGGAATTTAAGGGACT</left_flank>
        <right_flank>GTCACTAACCTGCGATATAGGTTATTTCCTTTTGTACATCGTCAAATTGA</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATAGTCAAAATGACCGGTAATCAACTGAGAATTCAGTTTTGAATATTATACTACATCTGTTGTTAATTCCTCATATTCGAATCTCATTGTTTTGTATTATTTCAAAATTTTGATATTTCTGTAATTATGTGACGCGCAAACTGCAACAAAAATGAACGAAAAATTTATTTCAACTGTTTAAGAACACATTCCAACAACTTTTTAGTCTGCTTGTCTGCCAAATTCTTGTTCATAAACTCTGGGAAAATCGCCGTCATTTTGATACTAGATCGAACTTCTGGAGACCCATCTTTCTGACTTGAACCCGGTTGTGTAAACTGAAATATAATTTTGAATTCTACATGTAACAAAAAGTCTCTTACGTGATAGATCATAAATTTCCTTCCAGAATTTCCGATGAAGTCACAACTGAATCGATTGGAATTTTTTAGTTGTCGTACCCAGTTGATATCGTTTTTGTACTCTTCTAAATATCAATTATTGGAATTTAAGGGACTTGTCACTAACCTGCGATATAGGTTATTTCCTTTTGTACATCGTCAAATTGAATTCTATACGCGTACATCTCTAAGAAAAATTCGGATGGCTTTAGAAACTTTGCTAACTTTTGCTCTTGATCTTTGGAACCTGAAATATTTGAAAATGCCACTTCACTAATTTTGCCACCAACCTATTTCTAGCGATTCTACGAGTTTAATCGAATTAGGTTTCACGATTTTCTCCAAACACTGATTGAATAGGGGAAGTGTTGATATTCGAGCATTTACTATGCTTATGGAACACAGCTCTTGAATCAATGAGTTGATTTGTTTTTTTCCATAGGAGAGAAGAATGTCCATTTTTTGGGTCATTATCTAAAAATTTGGAAAATGTACTTGGTTTCACAAAAAATGAGATCTACCTTTTCATCCATGGTCACTTTCGTGAATACTGAAGAGTTGATAGAGATTGTGGAAAGTGCACTTCTCCATGAGCTGATCGAAAATCGAGAGTCTGAT</canonical>
            <polymorphic>AAATAGTCAAAATGACCGGTAATCAACTGAGAATTCAGTTTTGAATATTATACTACATCTGTTGTTAATTCCTCATATTCGAATCTCATTGTTTTGTATTATTTCAAAATTTTGATATTTCTGTAATTATGTGACGCGCAAACTGCAACAAAAATGAACGAAAAATTTATTTCAACTGTTTAAGAACACATTCCAACAACTTTTTAGTCTGCTTGTCTGCCAAATTCTTGTTCATAAACTCTGGGAAAATCGCCGTCATTTTGATACTAGATCGAACTTCTGGAGACCCATCTTTCTGACTTGAACCCGGTTGTGTAAACTGAAATATAATTTTGAATTCTACATGTAACAAAAAGTCTCTTACGTGATAGATCATAAATTTCCTTCCAGAATTTCCGATGAAGTCACAACTGAATCGATTGGAATTTTTTAGTTGTCGTACCCAGTTGATATCGTTTTTGTACTCTTCTAAATATCAATTATTGGAATTTAAGGGACTWGTCACTAACCTGCGATATAGGTTATTTCCTTTTGTACATCGTCAAATTGAATTCTATACGCGTACATCTCTAAGAAAAATTCGGATGGCTTTAGAAACTTTGCTAACTTTTGCTCTTGATCTTTGGAACCTGAAATATTTGAAAATGCCACTTCACTAATTTTGCCACCAACCTATTTCTAGCGATTCTACGAGTTTAATCGAATTAGGTTTCACGATTTTCTCCAAACACTGATTGAATAGGGGAAGTGTTGATATTCGAGCATTTACTATGCTTATGGAACACAGCTCTTGAATCAATGAGTTGATTTGTTTTTTTCCATAGGAGAGAAGAATGTCCATTTTTTGGGTCATTATCTAAAAATTTGGAAAATGTACTTGGTTTCACAAAAAATGAGATCTACCTTTTCATCCATGGTCACTTTCGTGAATACTGAAGAGTTGATAGAGATTGTGGAAAGTGCACTTCTCCATGAGCTGATCGAAAATCGAGAGTCTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGTTGATATCGTTTTTGTACT</pcr_primer_p1>
		<pcr_primer_p2>CGTAGAATCGCTAGAAATAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAGTTGATATCGTTTTTGTACTCTTCTAAATATCAATTATTGGAATTTAAGGGACTTGTCACTAACCTGCGATATAGGTTATTTCCTTTTGTACATCGTCAAATTGAATTCTATACGCGTACATCTCTAAGAAAAATTCGGATGGCTTTAGAAACTTTGCTAACTTTTGCTCTTGATCTTTGGAACCTGAAATATTTGAAAATGCCACTTCACTAATTTTGCCACCAACCTATTTCTAGCGATTCTACG</canonical_amplicon>
		<polymorphic_amplicon>CCAGTTGATATCGTTTTTGTACTCTTCTAAATATCAATTATTGGAATTTAAGGGACTWGTCACTAACCTGCGATATAGGTTATTTCCTTTTGTACATCGTCAAATTGAATTCTATACGCGTACATCTCTAAGAAAAATTCGGATGGCTTTAGAAACTTTGCTAACTTTTGCTCTTGATCTTTGGAACCTGAAATATTTGAAAATGCCACTTCACTAATTTTGCCACCAACCTATTTCTAGCGATTCTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29759</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>290005</contig_pos>
        <strand>+</strand>
        <context>TTTGGAAAAT[G/T]TACTYGGTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGAGAGAAGAATGTCCATTTTTTGGGTCATTATCTAAAAATTTGGAAAAT</left_flank>
        <right_flank>TACTTGGTTTCACAAAAAATGAGATCTACCTTTTCATCCATGGTCACTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAATTTCCTTCCAGAATTTCCGATGAAGTCACAACTGAATCGATTGGAATTTTTTAGTTGTCGTACCCAGTTGATATCGTTTTTGTACTCTTCTAAATATCAATTATTGGAATTTAAGGGACTTGTCACTAACCTGCGATATAGGTTATTTCCTTTTGTACATCGTCAAATTGAATTCTATACGCGTACATCTCTAAGAAAAATTCGGATGGCTTTAGAAACTTTGCTAACTTTTGCTCTTGATCTTTGGAACCTGAAATATTTGAAAATGCCACTTCACTAATTTTGCCACCAACCTATTTCTAGCGATTCTACGAGTTTAATCGAATTAGGTTTCACGATTTTCTCCAAACACTGATTGAATAGGGGAAGTGTTGATATTCGAGCATTTACTATGCTTATGGAACACAGCTCTTGAATCAATGAGTTGATTTGTTTTTTTCCATAGGAGAGAAGAATGTCCATTTTTTGGGTCATTATCTAAAAATTTGGAAAATGTACTTGGTTTCACAAAAAATGAGATCTACCTTTTCATCCATGGTCACTTTCGTGAATACTGAAGAGTTGATAGAGATTGTGGAAAGTGCACTTCTCCATGAGCTGATCGAAAATCGAGAGTCTGATCTTGGTTTTGGTGTTGCGGAGTCTCGGTTTATGTGAAGCACTTCTGATTCGATTTGATTCCAGATAGACTGAAAATTTACTTTTATTGACTTGATACCACGTAGCTGTCAGTAAGGTTTAGAGTCAATGTTTTTTCCCATTATTTTCAAACGAGGGGAAATGAAAAAAAAAATTCCACGAAATTTCGTTCATATCCGCCCTTCGAGAAATTGAAATTGCATAAGTAATATTACGTTGGCTTCGGGAACGCAAAGTAAACAATGGAGCACCGGACAATAATACCGAAAACCTATTTTTATTTGATTTTCGGCCTTCCCGATCACTTTGAAAATTTTGGAGGGTGTGAATCAAACCTAGATTGAAATCTTCGCATT</canonical>
            <polymorphic>ATAAATTTCCTTCCAGAATTTCCGATGAAGTCACAACTGAATCGATTGGAATTTTTTAGTTGTCGTACCCAGTTGATATCGTTTTTGTACTCTTCTAAATATCAATTATTGGAATTTAAGGGACTTGTCACTAACCTGCGATATAGGTTATTTCCTTTTGTACATCGTCAAATTGAATTCTATACGCGTACATCTCTAAGAAAAATTCGGATGGCTTTAGAAACTTTGCTAACTTTTGCTCTTGATCTTTGGAACCTGAAATATTTGAAAATGCCACTTCACTAATTTTGCCACCAACCTATTTCTAGCGATTCTACGAGTTTAATCGAATTAGGTTTCACGATTTTCTCCAAACACTGATTGAATAGGGGAAGTGTTGATATTCGAGCATTTACTATGCTTATGGAACACAGCTCTTGAATCAATGAGTTGATTTGTTTTTTTCCATAGGAGAGAAGAATGTCCATTTTTTGGGTCATTATCTAAAAATTTGGAAAATKTACTTGGTTTCACAAAAAATGAGATCTACCTTTTCATCCATGGTCACTTTCGTGAATACTGAAGAGTTGATAGAGATTGTGGAAAGTGCACTTCTCCATGAGCTGATCGAAAATCGAGAGTCTGATCTTGGTTTTGGTGTTGCGGAGTCTCGGTTTATGTGAAGCACTTCTGATTCGATTTGATTCCAGATAGACTGAAAATTTACTTTTATTGACTTGATACCACGTAGCTGTCAGTAAGGTTTAGAGTCAATGTTTTTTCCCATTATTTTCAAACGAGGGGAAATGAAAAAAAAAATTCCACGAAATTTCGTTCATATCCGCCCTTCGAGAAATTGAAATTGCATAAGTAATATTACGTTGGCTTCGGGAACGCAAAGTAAACAATGGAGCACCGGACAATAATACCGAAAACCTATTTTTATTTGATTTTCGGCCTTCCCGATCACTTTGAAAATTTTGGAGGGTGTGAATCAAACCTAGATTGAAATCTTCGCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 312 73 66 28 22</canonical_bands>
                <polymorphic_bands>811 73 66 28 22</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>501 340 86 73</canonical_bands>
                <polymorphic_bands>841 86 73</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATCGAATTAGGTTTCACGAT</pcr_primer_p1>
		<pcr_primer_p2>CAACTCTTCAGTATTCACGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TAATCGAATTAGGTTTCACGATTTTCTCCAAACACTGATTGAATAGGGGAAGTGTTGATATTCGAGCATTTACTATGCTTATGGAACACAGCTCTTGAATCAATGAGTTGATTTGTTTTTTTCCATAGGAGAGAAGAATGTCCATTTTTTGGGTCATTATCTAAAAATTTGGAAAATGTACTTGGTTTCACAAAAAATGAGATCTACCTTTTCATCCATGGTCACTTTCGTGAATACTGAAGAGTTG</canonical_amplicon>
		<polymorphic_amplicon>TAATCGAATTAGGTTTCACGATTTTCTCCAAACACTGATTGAATAGGGGAAGTGTTGATATTCGAGCATTTACTATGCTTATGGAACACAGCTCTTGAATCAATGAGTTGATTTGTTTTTTTCCATAGGAGAGAAGAATGTCCATTTTTTGGGTCATTATCTAAAAATTTGGAAAATKTACTTGGTTTCACAAAAAATGAGATCTACCTTTTCATCCATGGTCACTTTCGTGAATACTGAAGAGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29760</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>290010</contig_pos>
        <strand>+</strand>
        <context>AAAATKTACT[C/T]GGTTTCACRA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAGAATGTCCATTTTTTGGGTCATTATCTAAAAATTTGGAAAATGTACT</left_flank>
        <right_flank>GGTTTCACAAAAAATGAGATCTACCTTTTCATCCATGGTCACTTTCGTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCTTCCAGAATTTCCGATGAAGTCACAACTGAATCGATTGGAATTTTTTAGTTGTCGTACCCAGTTGATATCGTTTTTGTACTCTTCTAAATATCAATTATTGGAATTTAAGGGACTTGTCACTAACCTGCGATATAGGTTATTTCCTTTTGTACATCGTCAAATTGAATTCTATACGCGTACATCTCTAAGAAAAATTCGGATGGCTTTAGAAACTTTGCTAACTTTTGCTCTTGATCTTTGGAACCTGAAATATTTGAAAATGCCACTTCACTAATTTTGCCACCAACCTATTTCTAGCGATTCTACGAGTTTAATCGAATTAGGTTTCACGATTTTCTCCAAACACTGATTGAATAGGGGAAGTGTTGATATTCGAGCATTTACTATGCTTATGGAACACAGCTCTTGAATCAATGAGTTGATTTGTTTTTTTCCATAGGAGAGAAGAATGTCCATTTTTTGGGTCATTATCTAAAAATTTGGAAAATGTACTTGGTTTCACAAAAAATGAGATCTACCTTTTCATCCATGGTCACTTTCGTGAATACTGAAGAGTTGATAGAGATTGTGGAAAGTGCACTTCTCCATGAGCTGATCGAAAATCGAGAGTCTGATCTTGGTTTTGGTGTTGCGGAGTCTCGGTTTATGTGAAGCACTTCTGATTCGATTTGATTCCAGATAGACTGAAAATTTACTTTTATTGACTTGATACCACGTAGCTGTCAGTAAGGTTTAGAGTCAATGTTTTTTCCCATTATTTTCAAACGAGGGGAAATGAAAAAAAAAATTCCACGAAATTTCGTTCATATCCGCCCTTCGAGAAATTGAAATTGCATAAGTAATATTACGTTGGCTTCGGGAACGCAAAGTAAACAATGGAGCACCGGACAATAATACCGAAAACCTATTTTTATTTGATTTTCGGCCTTCCCGATCACTTTGAAAATTTTGGAGGGTGTGAATCAAACCTAGATTGAAATCTTCGCATTTGAAA</canonical>
            <polymorphic>TTTCCTTCCAGAATTTCCGATGAAGTCACAACTGAATCGATTGGAATTTTTTAGTTGTCGTACCCAGTTGATATCGTTTTTGTACTCTTCTAAATATCAATTATTGGAATTTAAGGGACTTGTCACTAACCTGCGATATAGGTTATTTCCTTTTGTACATCGTCAAATTGAATTCTATACGCGTACATCTCTAAGAAAAATTCGGATGGCTTTAGAAACTTTGCTAACTTTTGCTCTTGATCTTTGGAACCTGAAATATTTGAAAATGCCACTTCACTAATTTTGCCACCAACCTATTTCTAGCGATTCTACGAGTTTAATCGAATTAGGTTTCACGATTTTCTCCAAACACTGATTGAATAGGGGAAGTGTTGATATTCGAGCATTTACTATGCTTATGGAACACAGCTCTTGAATCAATGAGTTGATTTGTTTTTTTCCATAGGAGAGAAGAATGTCCATTTTTTGGGTCATTATCTAAAAATTTGGAAAATGTACTYGGTTTCACAAAAAATGAGATCTACCTTTTCATCCATGGTCACTTTCGTGAATACTGAAGAGTTGATAGAGATTGTGGAAAGTGCACTTCTCCATGAGCTGATCGAAAATCGAGAGTCTGATCTTGGTTTTGGTGTTGCGGAGTCTCGGTTTATGTGAAGCACTTCTGATTCGATTTGATTCCAGATAGACTGAAAATTTACTTTTATTGACTTGATACCACGTAGCTGTCAGTAAGGTTTAGAGTCAATGTTTTTTCCCATTATTTTCAAACGAGGGGAAATGAAAAAAAAAATTCCACGAAATTTCGTTCATATCCGCCCTTCGAGAAATTGAAATTGCATAAGTAATATTACGTTGGCTTCGGGAACGCAAAGTAAACAATGGAGCACCGGACAATAATACCGAAAACCTATTTTTATTTGATTTTCGGCCTTCCCGATCACTTTGAAAATTTTGGAGGGTGTGAATCAAACCTAGATTGAAATCTTCGCATTTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATCGAATTAGGTTTCACGAT</pcr_primer_p1>
		<pcr_primer_p2>CAACTCTTCAGTATTCACGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TAATCGAATTAGGTTTCACGATTTTCTCCAAACACTGATTGAATAGGGGAAGTGTTGATATTCGAGCATTTACTATGCTTATGGAACACAGCTCTTGAATCAATGAGTTGATTTGTTTTTTTCCATAGGAGAGAAGAATGTCCATTTTTTGGGTCATTATCTAAAAATTTGGAAAATGTACTTGGTTTCACAAAAAATGAGATCTACCTTTTCATCCATGGTCACTTTCGTGAATACTGAAGAGTTG</canonical_amplicon>
		<polymorphic_amplicon>TAATCGAATTAGGTTTCACGATTTTCTCCAAACACTGATTGAATAGGGGAAGTGTTGATATTCGAGCATTTACTATGCTTATGGAACACAGCTCTTGAATCAATGAGTTGATTTGTTTTTTTCCATAGGAGAGAAGAATGTCCATTTTTTGGGTCATTATCTAAAAATTTGGAAAATGTACTYGGTTTCACAAAAAATGAGATCTACCTTTTCATCCATGGTCACTTTCGTGAATACTGAAGAGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29761</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>290019</contig_pos>
        <strand>+</strand>
        <context>TYGGTTTCAC[A/G]AAAAATGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCATTTTTTGGGTCATTATCTAAAAATTTGGAAAATGTACTTGGTTTCAC</left_flank>
        <right_flank>AAAAATGAGATCTACCTTTTCATCCATGGTCACTTTCGTGAATACTGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATTTCCGATGAAGTCACAACTGAATCGATTGGAATTTTTTAGTTGTCGTACCCAGTTGATATCGTTTTTGTACTCTTCTAAATATCAATTATTGGAATTTAAGGGACTTGTCACTAACCTGCGATATAGGTTATTTCCTTTTGTACATCGTCAAATTGAATTCTATACGCGTACATCTCTAAGAAAAATTCGGATGGCTTTAGAAACTTTGCTAACTTTTGCTCTTGATCTTTGGAACCTGAAATATTTGAAAATGCCACTTCACTAATTTTGCCACCAACCTATTTCTAGCGATTCTACGAGTTTAATCGAATTAGGTTTCACGATTTTCTCCAAACACTGATTGAATAGGGGAAGTGTTGATATTCGAGCATTTACTATGCTTATGGAACACAGCTCTTGAATCAATGAGTTGATTTGTTTTTTTCCATAGGAGAGAAGAATGTCCATTTTTTGGGTCATTATCTAAAAATTTGGAAAATGTACTTGGTTTCACAAAAAATGAGATCTACCTTTTCATCCATGGTCACTTTCGTGAATACTGAAGAGTTGATAGAGATTGTGGAAAGTGCACTTCTCCATGAGCTGATCGAAAATCGAGAGTCTGATCTTGGTTTTGGTGTTGCGGAGTCTCGGTTTATGTGAAGCACTTCTGATTCGATTTGATTCCAGATAGACTGAAAATTTACTTTTATTGACTTGATACCACGTAGCTGTCAGTAAGGTTTAGAGTCAATGTTTTTTCCCATTATTTTCAAACGAGGGGAAATGAAAAAAAAAATTCCACGAAATTTCGTTCATATCCGCCCTTCGAGAAATTGAAATTGCATAAGTAATATTACGTTGGCTTCGGGAACGCAAAGTAAACAATGGAGCACCGGACAATAATACCGAAAACCTATTTTTATTTGATTTTCGGCCTTCCCGATCACTTTGAAAATTTTGGAGGGTGTGAATCAAACCTAGATTGAAATCTTCGCATTTGAAAAATTTTTGA</canonical>
            <polymorphic>AGAATTTCCGATGAAGTCACAACTGAATCGATTGGAATTTTTTAGTTGTCGTACCCAGTTGATATCGTTTTTGTACTCTTCTAAATATCAATTATTGGAATTTAAGGGACTTGTCACTAACCTGCGATATAGGTTATTTCCTTTTGTACATCGTCAAATTGAATTCTATACGCGTACATCTCTAAGAAAAATTCGGATGGCTTTAGAAACTTTGCTAACTTTTGCTCTTGATCTTTGGAACCTGAAATATTTGAAAATGCCACTTCACTAATTTTGCCACCAACCTATTTCTAGCGATTCTACGAGTTTAATCGAATTAGGTTTCACGATTTTCTCCAAACACTGATTGAATAGGGGAAGTGTTGATATTCGAGCATTTACTATGCTTATGGAACACAGCTCTTGAATCAATGAGTTGATTTGTTTTTTTCCATAGGAGAGAAGAATGTCCATTTTTTGGGTCATTATCTAAAAATTTGGAAAATGTACTTGGTTTCACRAAAAATGAGATCTACCTTTTCATCCATGGTCACTTTCGTGAATACTGAAGAGTTGATAGAGATTGTGGAAAGTGCACTTCTCCATGAGCTGATCGAAAATCGAGAGTCTGATCTTGGTTTTGGTGTTGCGGAGTCTCGGTTTATGTGAAGCACTTCTGATTCGATTTGATTCCAGATAGACTGAAAATTTACTTTTATTGACTTGATACCACGTAGCTGTCAGTAAGGTTTAGAGTCAATGTTTTTTCCCATTATTTTCAAACGAGGGGAAATGAAAAAAAAAATTCCACGAAATTTCGTTCATATCCGCCCTTCGAGAAATTGAAATTGCATAAGTAATATTACGTTGGCTTCGGGAACGCAAAGTAAACAATGGAGCACCGGACAATAATACCGAAAACCTATTTTTATTTGATTTTCGGCCTTCCCGATCACTTTGAAAATTTTGGAGGGTGTGAATCAAACCTAGATTGAAATCTTCGCATTTGAAAAATTTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATCGAATTAGGTTTCACGAT</pcr_primer_p1>
		<pcr_primer_p2>CAACTCTTCAGTATTCACGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TAATCGAATTAGGTTTCACGATTTTCTCCAAACACTGATTGAATAGGGGAAGTGTTGATATTCGAGCATTTACTATGCTTATGGAACACAGCTCTTGAATCAATGAGTTGATTTGTTTTTTTCCATAGGAGAGAAGAATGTCCATTTTTTGGGTCATTATCTAAAAATTTGGAAAATGTACTTGGTTTCACAAAAAATGAGATCTACCTTTTCATCCATGGTCACTTTCGTGAATACTGAAGAGTTG</canonical_amplicon>
		<polymorphic_amplicon>TAATCGAATTAGGTTTCACGATTTTCTCCAAACACTGATTGAATAGGGGAAGTGTTGATATTCGAGCATTTACTATGCTTATGGAACACAGCTCTTGAATCAATGAGTTGATTTGTTTTTTTCCATAGGAGAGAAGAATGTCCATTTTTTGGGTCATTATCTAAAAATTTGGAAAATGTACTTGGTTTCACRAAAAATGAGATCTACCTTTTCATCCATGGTCACTTTCGTGAATACTGAAGAGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29762</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>294073</contig_pos>
        <strand>+</strand>
        <context>TGCGAAGCGT[C/G]YGTAACGGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTGCGGTCCGTATGCGGTTCCTATTTCAGCCTCGCGCGAATGCGAAGCGT</left_flank>
        <right_flank>TGTAACGGATCCGTTCGTATTTTACCTGTGTATGAGAAGAGGACTTTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGGTTAAATTTTAGGTTTTTGAGACTTTTGAATTGAAAGTGAAAGTGGTTAGAAAAAACAAAACAAAGCGAAGAAAGAAGTAAAATGAATGTTTGTTTGAGTTAAGCGTCATAAAAGCTTCAAATGATTTGGTTTATGTTATTTTATGATTTTCAAAAATTGGAACAAAAAAAATTTTTTTTTTAAGAAGTTGAAAAATCAGGAAAAAACTGGAAGATTTACACAGGTGATTCGCGATCAATCCGTTACGGACGCTCCGCGTTCGCGCGCGGTTGAAATAGGAACCGCATACGGACCGTACGCGAACCGTTTTTAGTAAATAGCAGTACATNNNNNNNNNNGATCCGTTTGGTCATGATTCGCAATCGGATCGGATACGGAGCTCGCGAACGGACAGGATACGGATCAATCCGAATAATGTACTGTTATTTACTGAAAAAGGTTCGCGTGCGGTCCGTATGCGGTTCCTATTTCAGCCTCGCGCGAATGCGAAGCGTGTGTAACGGATCCGTTCGTATTTTACCTGTGTATGAGAAGAGGACTTTGAACAATAGTTTTATCGATTTGAAATATGTAGAAATGCATGTAGATTCACATAAAAACCAACAAAAGATGTGAAAAAGTTAGGAAAACTTTAAAATTTTCAGATTTTTAATTTTCAGATTTTTCCGAAATTTTCAGATTTTAAAGATTTTTTTAAGCTAAAAAAATAAAACTTAAAGATTTTTTAAGCTAAAAAAATGCTCTCGCTCACTTCTGAAATTTTTGAGTAAGTTCGGAATATTTTTTCAATTACTGAAAAAAAAAACTGAAAAAACTAGCTCAATTTTTTTCTAGAGGTGTCCCAAAATTTTCAGTTAGGCGGGATTTTGAAAAAAGAGTCTAAAACCATTTTCATAGTTTTCAGAAATGAACGAAAACTGCGACTTTTGCTTTTTGAAGCGATTTTTCAAAAATATTCTGGTTTTTTAAATTTCATCCTTTGTTGTCTTGTGGAA</canonical>
            <polymorphic>TCAGGTTAAATTTTAGGTTTTTGAGACTTTTGAATTGAAAGTGAAAGTGGTTAGAAAAAACAAAACAAAGCGAAGAAAGAAGTAAAATGAATGTTTGTTTGAGTTAAGCGTCATAAAAGCTTCAAATGATTTGGTTTATGTTATTTTATGATTTTCAAAAATTGGAACAAAAAAAATTTTTTTTTTAAGAAGTTGAAAAATCAGGAAAAAACTGGAAGATTTACACAGGTGATTCGCGATCAATCCGTTACGGACGCTCCGCGTTCGCGCGCGGTTGAAATAGGAACCGCATACGGACCGTACGCGAACCGTTTTTAGTAAATAGCAGTACATNNNNNNNNNNGATCCGTTTGGTCATGATTCGCAATCGGATCGGATACGGAGCTCGCGAACGGACAGGATACGGATCAATCCGAATAATGTACTGTTATTTACTGAAAAAGGTTCGCGTGCGGTCCGTATGCGGTTCCTATTTCAGCCTCGCGCGAATGCGAAGCGTSTGTAACGGATCCGTTCGTATTTTACCTGTGTATGAGAAGAGGACTTTGAACAATAGTTTTATCGATTTGAAATATGTAGAAATGCATGTAGATTCACATAAAAACCAACAAAAGATGTGAAAAAGTTAGGAAAACTTTAAAATTTTCAGATTTTTAATTTTCAGATTTTTCCGAAATTTTCAGATTTTAAAGATTTTTTTAAGCTAAAAAAATAAAACTTAAAGATTTTTTAAGCTAAAAAAATGCTCTCGCTCACTTCTGAAATTTTTGAGTAAGTTCGGAATATTTTTTCAATTACTGAAAAAAAAAACTGAAAAAACTAGCTCAATTTTTTTCTAGAGGTGTCCCAAAATTTTCAGTTAGGCGGGATTTTGAAAAAAGAGTCTAAAACCATTTTCATAGTTTTCAGAAATGAACGAAAACTGCGACTTTTGCTTTTTGAAGCGATTTTTCAAAAATATTCTGGTTTTTTAAATTTCATCCTTTGTTGTCTTGTGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>221 176 153 136 89 66 48 43 28 23 6 6 3 2</canonical_bands>
                <polymorphic_bands>221 176 153 136 89 78 66 43 23 6 6 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGTTTTTAGTAAATAGCAGTACA</pcr_primer_p1>
		<pcr_primer_p2>TATTGTTCAAAGTCCTCTTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCGTTTTTAGTAAATAGCAGTACATNNNNNNNNNNGATCCGTTTGGTCATGATTCGCAATCGGATCGGATACGGAGCTCGCGAACGGACAGGATACGGATCAATCCGAATAATGTACTGTTATTTACTGAAAAAGGTTCGCGTGCGGTCCGTATGCGGTTCCTATTTCAGCCTCGCGCGAATGCGAAGCGTGTGTAACGGATCCGTTCGTATTTTACCTGTGTATGAGAAGAGGACTTTGAACAATA</canonical_amplicon>
		<polymorphic_amplicon>CCGTTTTTAGTAAATAGCAGTACATNNNNNNNNNNGATCCGTTTGGTCATGATTCGCAATCGGATCGGATACGGAGCTCGCGAACGGACAGGATACGGATCAATCCGAATAATGTACTGTTATTTACTGAAAAAGGTTCGCGTGCGGTCCGTATGCGGTTCCTATTTCAGCCTCGCGCGAATGCGAAGCGTSTGTAACGGATCCGTTCGTATTTTACCTGTGTATGAGAAGAGGACTTTGAACAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29763</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>294074</contig_pos>
        <strand>+</strand>
        <context>GCGAAGCGTS[C/T]GTAACGGATC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCGGTCCGTATGCGGTTCCTATTTCAGCCTCGCGCGAATGCGAAGCGTG</left_flank>
        <right_flank>GTAACGGATCCGTTCGTATTTTACCTGTGTATGAGAAGAGGACTTTGAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGGTTAAATTTTAGGTTTTTGAGACTTTTGAATTGAAAGTGAAAGTGGTTAGAAAAAACAAAACAAAGCGAAGAAAGAAGTAAAATGAATGTTTGTTTGAGTTAAGCGTCATAAAAGCTTCAAATGATTTGGTTTATGTTATTTTATGATTTTCAAAAATTGGAACAAAAAAAATTTTTTTTTTAAGAAGTTGAAAAATCAGGAAAAAACTGGAAGATTTACACAGGTGATTCGCGATCAATCCGTTACGGACGCTCCGCGTTCGCGCGCGGTTGAAATAGGAACCGCATACGGACCGTACGCGAACCGTTTTTAGTAAATAGCAGTACATNNNNNNNNNNGATCCGTTTGGTCATGATTCGCAATCGGATCGGATACGGAGCTCGCGAACGGACAGGATACGGATCAATCCGAATAATGTACTGTTATTTACTGAAAAAGGTTCGCGTGCGGTCCGTATGCGGTTCCTATTTCAGCCTCGCGCGAATGCGAAGCGTGTGTAACGGATCCGTTCGTATTTTACCTGTGTATGAGAAGAGGACTTTGAACAATAGTTTTATCGATTTGAAATATGTAGAAATGCATGTAGATTCACATAAAAACCAACAAAAGATGTGAAAAAGTTAGGAAAACTTTAAAATTTTCAGATTTTTAATTTTCAGATTTTTCCGAAATTTTCAGATTTTAAAGATTTTTTTAAGCTAAAAAAATAAAACTTAAAGATTTTTTAAGCTAAAAAAATGCTCTCGCTCACTTCTGAAATTTTTGAGTAAGTTCGGAATATTTTTTCAATTACTGAAAAAAAAAACTGAAAAAACTAGCTCAATTTTTTTCTAGAGGTGTCCCAAAATTTTCAGTTAGGCGGGATTTTGAAAAAAGAGTCTAAAACCATTTTCATAGTTTTCAGAAATGAACGAAAACTGCGACTTTTGCTTTTTGAAGCGATTTTTCAAAAATATTCTGGTTTTTTAAATTTCATCCTTTGTTGTCTTGTGGAAG</canonical>
            <polymorphic>CAGGTTAAATTTTAGGTTTTTGAGACTTTTGAATTGAAAGTGAAAGTGGTTAGAAAAAACAAAACAAAGCGAAGAAAGAAGTAAAATGAATGTTTGTTTGAGTTAAGCGTCATAAAAGCTTCAAATGATTTGGTTTATGTTATTTTATGATTTTCAAAAATTGGAACAAAAAAAATTTTTTTTTTAAGAAGTTGAAAAATCAGGAAAAAACTGGAAGATTTACACAGGTGATTCGCGATCAATCCGTTACGGACGCTCCGCGTTCGCGCGCGGTTGAAATAGGAACCGCATACGGACCGTACGCGAACCGTTTTTAGTAAATAGCAGTACATNNNNNNNNNNGATCCGTTTGGTCATGATTCGCAATCGGATCGGATACGGAGCTCGCGAACGGACAGGATACGGATCAATCCGAATAATGTACTGTTATTTACTGAAAAAGGTTCGCGTGCGGTCCGTATGCGGTTCCTATTTCAGCCTCGCGCGAATGCGAAGCGTGYGTAACGGATCCGTTCGTATTTTACCTGTGTATGAGAAGAGGACTTTGAACAATAGTTTTATCGATTTGAAATATGTAGAAATGCATGTAGATTCACATAAAAACCAACAAAAGATGTGAAAAAGTTAGGAAAACTTTAAAATTTTCAGATTTTTAATTTTCAGATTTTTCCGAAATTTTCAGATTTTAAAGATTTTTTTAAGCTAAAAAAATAAAACTTAAAGATTTTTTAAGCTAAAAAAATGCTCTCGCTCACTTCTGAAATTTTTGAGTAAGTTCGGAATATTTTTTCAATTACTGAAAAAAAAAACTGAAAAAACTAGCTCAATTTTTTTCTAGAGGTGTCCCAAAATTTTCAGTTAGGCGGGATTTTGAAAAAAGAGTCTAAAACCATTTTCATAGTTTTCAGAAATGAACGAAAACTGCGACTTTTGCTTTTTGAAGCGATTTTTCAAAAATATTCTGGTTTTTTAAATTTCATCCTTTGTTGTCTTGTGGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>221 176 153 136 89 66 48 42 28 23 6 6 4 2</canonical_bands>
                <polymorphic_bands>221 176 153 136 89 66 48 42 30 23 6 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGTTTTTAGTAAATAGCAGTACA</pcr_primer_p1>
		<pcr_primer_p2>TATTGTTCAAAGTCCTCTTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCGTTTTTAGTAAATAGCAGTACATNNNNNNNNNNGATCCGTTTGGTCATGATTCGCAATCGGATCGGATACGGAGCTCGCGAACGGACAGGATACGGATCAATCCGAATAATGTACTGTTATTTACTGAAAAAGGTTCGCGTGCGGTCCGTATGCGGTTCCTATTTCAGCCTCGCGCGAATGCGAAGCGTGTGTAACGGATCCGTTCGTATTTTACCTGTGTATGAGAAGAGGACTTTGAACAATA</canonical_amplicon>
		<polymorphic_amplicon>CCGTTTTTAGTAAATAGCAGTACATNNNNNNNNNNGATCCGTTTGGTCATGATTCGCAATCGGATCGGATACGGAGCTCGCGAACGGACAGGATACGGATCAATCCGAATAATGTACTGTTATTTACTGAAAAAGGTTCGCGTGCGGTCCGTATGCGGTTCCTATTTCAGCCTCGCGCGAATGCGAAGCGTGYGTAACGGATCCGTTCGTATTTTACCTGTGTATGAGAAGAGGACTTTGAACAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29764</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>302117</contig_pos>
        <strand>+</strand>
        <context>TCTTCTGGAA[A/T]TTTTTTGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACGAGATTCCAGCCACCTCGTCGTAGTCGGCATATTCATTTCTTCTGGAA</left_flank>
        <right_flank>TTTTTTGATTAGAGCTAATTAAGTTTAAAAATGACTCGCTTCATTAATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTAAAACGGTCAAAAATTCGTACGATATCTTTTTCGATTTGTATTTATAATCAAACCTCACCTGCGAGAGAAGCTGTGCTGAATTCCAGCCGGTGGCAAAATCCTCTCCGGCGTTTCCACAATTGCAAGCGGCGATGGCATGCGCCTTGTCATGTTAGTCCTTTTTAGGTTGTACAAATCATCTCGGAACGAAATAAGTTCCGAGTTGAGGTTGATGTTCTGGGCTTGAAGACTGTGGACCAATCTGCAACTTAAAAAGTTGATCAGGAGTTTTTTTTATTTCTTTTCACTTAGTGAGCTCCTCGTTCTGTTTGGTAACCGTGAGCACCATACTCTCAGCGTTCAGAAGTCTCTCTTTCATCTCCAACACCTCATCCCATATTCTCCCATTTAATTCATCGACAGTGTTTGATTGAGAGTTTGGTAAGATGCCAGAAGTTGGAGAGCACGAGATTCCAGCCACCTCGTCGTAGTCGGCATATTCATTTCTTCTGGAATTTTTTTGATTAGAGCTAATTAAGTTTAAAAATGACTCGCTTCATTAATCTCATTGGATTCTCATTAGACTTTCTTTGAGTTCTTGGTGCCTCTTGAATCGGGAGTGGGTCTCCGTTGATTCTTCGCTTCTGATCCTTGATAAGGTCGATGAGAAGAATTGTGAACTGAATTGGGGTGAACTTGGCAAGTTTCTGTCTTCTTTGATTACGAGCAGCAGACATGTGTGTCGTGGACTGAAAATTTTCAAGATTTTCTGATCTATTTCGAAGCTTGAACTCACTGGCAAAAATAAGTTAGTTGGTCCTTTGGCGGTTTTAGCCCATTTAGTCATATTCCAGTTCACCTCGTTTTCTCTGCGAACGGTTTCATCAAATGCGTCCTCGCAAAGATCGAAGAATTGACCTTTCGGTAGAACTGAGATCGCCAATCTGGAGTCTTTGGTTTTGATGAGAAATTGTTTCTCAGTGACTTCTGGGATGAAAAAGTCTTGATTATTGCGA</canonical>
            <polymorphic>ATTTAAAACGGTCAAAAATTCGTACGATATCTTTTTCGATTTGTATTTATAATCAAACCTCACCTGCGAGAGAAGCTGTGCTGAATTCCAGCCGGTGGCAAAATCCTCTCCGGCGTTTCCACAATTGCAAGCGGCGATGGCATGCGCCTTGTCATGTTAGTCCTTTTTAGGTTGTACAAATCATCTCGGAACGAAATAAGTTCCGAGTTGAGGTTGATGTTCTGGGCTTGAAGACTGTGGACCAATCTGCAACTTAAAAAGTTGATCAGGAGTTTTTTTTATTTCTTTTCACTTAGTGAGCTCCTCGTTCTGTTTGGTAACCGTGAGCACCATACTCTCAGCGTTCAGAAGTCTCTCTTTCATCTCCAACACCTCATCCCATATTCTCCCATTTAATTCATCGACAGTGTTTGATTGAGAGTTTGGTAAGATGCCAGAAGTTGGAGAGCACGAGATTCCAGCCACCTCGTCGTAGTCGGCATATTCATTTCTTCTGGAAWTTTTTTGATTAGAGCTAATTAAGTTTAAAAATGACTCGCTTCATTAATCTCATTGGATTCTCATTAGACTTTCTTTGAGTTCTTGGTGCCTCTTGAATCGGGAGTGGGTCTCCGTTGATTCTTCGCTTCTGATCCTTGATAAGGTCGATGAGAAGAATTGTGAACTGAATTGGGGTGAACTTGGCAAGTTTCTGTCTTCTTTGATTACGAGCAGCAGACATGTGTGTCGTGGACTGAAAATTTTCAAGATTTTCTGATCTATTTCGAAGCTTGAACTCACTGGCAAAAATAAGTTAGTTGGTCCTTTGGCGGTTTTAGCCCATTTAGTCATATTCCAGTTCACCTCGTTTTCTCTGCGAACGGTTTCATCAAATGCGTCCTCGCAAAGATCGAAGAATTGACCTTTCGGTAGAACTGAGATCGCCAATCTGGAGTCTTTGGTTTTGATGAGAAATTGTTTCTCAGTGACTTCTGGGATGAAAAAGTCTTGATTATTGCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>414 262 241 67 16</canonical_bands>
                <polymorphic_bands>655 262 67 16</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>272 157 139 103 71 67 57 48 39 19 16 12</canonical_bands>
                <polymorphic_bands>272 157 139 122 71 67 57 48 39 16 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGATTGAGAGTTTGGTAAGATG</pcr_primer_p1>
		<pcr_primer_p2>CAATTCTTCTCATCGACCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGATTGAGAGTTTGGTAAGATGCCAGAAGTTGGAGAGCACGAGATTCCAGCCACCTCGTCGTAGTCGGCATATTCATTTCTTCTGGAATTTTTTTGATTAGAGCTAATTAAGTTTAAAAATGACTCGCTTCATTAATCTCATTGGATTCTCATTAGACTTTCTTTGAGTTCTTGGTGCCTCTTGAATCGGGAGTGGGTCTCCGTTGATTCTTCGCTTCTGATCCTTGATAAGGTCGATGAGAAGAATTG</canonical_amplicon>
		<polymorphic_amplicon>TTGATTGAGAGTTTGGTAAGATGCCAGAAGTTGGAGAGCACGAGATTCCAGCCACCTCGTCGTAGTCGGCATATTCATTTCTTCTGGAAWTTTTTTGATTAGAGCTAATTAAGTTTAAAAATGACTCGCTTCATTAATCTCATTGGATTCTCATTAGACTTTCTTTGAGTTCTTGGTGCCTCTTGAATCGGGAGTGGGTCTCCGTTGATTCTTCGCTTCTGATCCTTGATAAGGTCGATGAGAAGAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29765</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>337131</contig_pos>
        <strand></strand>
        <context>ATGGTTGTGC[A/C]CGTGCAAGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTTGATAGTTGTCTACACCATATTCCTATGTCTTCTGCCATGGTTGTGC</left_flank>
        <right_flank>CGTGCAAGCAGGATCGCATCTCGCCGATTGAAGAAGAAGTGCCACGTCAC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAATATCAATCTTAAACGTTTTTTCCCAATCGACAACTCAAATTGAAAATAGACAATTAATGAAATTAAAACGGATTTCTGAGACTTTTTCTTATTATTTCACAATTTCAACATTCTTGATGTTTTCTGTAACATAGCATTTCAACCGGTCGTTGTTTCAGTCACCTTTGTTTAAACTTATTTTCAATATGAAAAAAAAACCTCTTGTCTCTCACCTCTTTTTTATTACCATACCAGGTCGTCCTATGCACATCATCACCCAACCATTCGAACAGATATTTTTCTCACGCAAATGCAAATATCTGCCAGTCAGAGGTGCTTCAATCAATACAACATAGATTTCCCTCTCCTCCGCTTTTCCTCGACATTTTTCGTCAGTTCCAACCAAACTGTCGTCTCCGGAAATGTATGAAGCTTGGATGTACCTGAACCATCCTGCGATTATTTCTTTGATAGTTGTCTACACCATATTCCTATGTCTTCTGCCATGGTTGTGCACGTGCAAGCAGGATCGCATCTCGCCGATTGAAGAAGAAGTGCCACGTCACATTGTTTGATGCGTATGTTCTCTGTTGAGTTTCGCGTTTTTCTTTGAATGAATTCATTTGTTACAAGTTTTTTACATTTTAAAACTTTCAGATTATGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGAACTTTGTTGTTGCGTGCGAGTCTGGGGGCAATCCCTATAAACCGTGAAAACAAATGAGTTTGCAAAAACGATATCTCGAACTGCTCTCATGTATTGATTGCATTGCACAGAACCTATTGCCTTTTCCACAAATGAACCGTCAGATGTCATCTGAGAAACATAAGCAGGGGTAGAAAGCATAAGGTTTTTTATCAATAA</canonical>
            <polymorphic>TGAAATATCAATCTTAAACGTTTTTTCCCAATCGACAACTCAAATTGAAAATAGACAATTAATGAAATTAAAACGGATTTCTGAGACTTTTTCTTATTATTTCACAATTTCAACATTCTTGATGTTTTCTGTAACATAGCATTTCAACCGGTCGTTGTTTCAGTCACCTTTGTTTAAACTTATTTTCAATATGAAAAAAAAACCTCTTGTCTCTCACCTCTTTTTTATTACCATACCAGGTCGTCCTATGCACATCATCACCCAACCATTCGAACAGATATTTTTCTCACGCAAATGCAAATATCTGCCAGTCAGAGGTGCTTCAATCAATACAACATAGATTTCCCTCTCCTCCGCTTTTCCTCGACATTTTTCGTCAGTTCCAACCAAACTGTCGTCTCCGGAAATGTATGAAGCTTGGATGTACCTGAACCATCCTGCGATTATTTCTTTGATAGTTGTCTACACCATATTCCTATGTCTTCTGCCATGGTTGTGCMCGTGCAAGCAGGATCGCATCTCGCCGATTGAAGAAGAAGTGCCACGTCACATTGTTTGATGCGTATGTTCTCTGTTGAGTTTCGCGTTTTTCTTTGAATGAATTCATTTGTTACAAGTTTTTTACATTTTAAAACTTTCAGATTATGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGAACTTTGTTGTTGCGTGCGAGTCTGGGGGCAATCCCTATAAACCGTGAAAACAAATGAGTTTGCAAAAACGATATCTCGAACTGCTCTCATGTATTGATTGCATTGCACAGAACCTATTGCCTTTTCCACAAATGAACCGTCAGATGTCATCTGAGAAACATAAGCAGGGGTAGAAAGCATAAGGTTTTTTATCAATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACGTG</site>
                <isoschizomers>
                    <enzyme>AcvI</enzyme>
                    <enzyme>BbrPI</enzyme>
                    <enzyme>Eco72I</enzyme>
                    <enzyme>PmaCI</enzyme>
                    <enzyme>PmlI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTGCAC</site>
                <isoschizomers>
                    <enzyme>Alw44I</enzyme>
                    <enzyme>ApaLI</enzyme>
                    <enzyme>VneI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>360 250 201 93 47 38 6 5</canonical_bands>
                <polymorphic_bands>360 250 207 93 47 38 5</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>147 104 100 73 70 65 62 61 50 37 36 31 31 30 29 21 18 13 8 5 4 3 2</canonical_bands>
                <polymorphic_bands>147 104 100 73 70 65 62 61 50 37 36 31 31 30 29 21 18 13 8 6 5 3</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 463 35</canonical_bands>
                <polymorphic_bands>537 463</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>482 456 44 18</canonical_bands>
                <polymorphic_bands>526 456 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTATGAAGCTTGGATGTACC</pcr_primer_p1>
		<pcr_primer_p2>GCTATTCCACATAATCTGAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGTATGAAGCTTGGATGTACCTGAACCATCCTGCGATTATTTCTTTGATAGTTGTCTACACCATATTCCTATGTCTTCTGCCATGGTTGTGCACGTGCAAGCAGGATCGCATCTCGCCGATTGAAGAAGAAGTGCCACGTCACATTGTTTGATGCGTATGTTCTCTGTTGAGTTTCGCGTTTTTCTTTGAATGAATTCATTTGTTACAAGTTTTTTACATTTTAAAACTTTCAGATTATGTGGAATAGC</canonical_amplicon>
		<polymorphic_amplicon>ATGTATGAAGCTTGGATGTACCTGAACCATCCTGCGATTATTTCTTTGATAGTTGTCTACACCATATTCCTATGTCTTCTGCCATGGTTGTGCMCGTGCAAGCAGGATCGCATCTCGCCGATTGAAGAAGAAGTGCCACGTCACATTGTTTGATGCGTATGTTCTCTGTTGAGTTTCGCGTTTTTCTTTGAATGAATTCATTTGTTACAAGTTTTTTACATTTTAAAACTTTCAGATTATGTGGAATAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29766</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>337235</contig_pos>
        <strand></strand>
        <context>TTGAATGAAT[T/C]CATTTGTTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTTTGATGCGTATGTTCTCTGTTGAGTTTCGCGTTTTTCTTTGAATGAAT</left_flank>
        <right_flank>CATTTGTTACAAGTTTTTTACATTTTAAAACTTTCAGATTATGTGGAATA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATTTCAACATTCTTGATGTTTTCTGTAACATAGCATTTCAACCGGTCGTTGTTTCAGTCACCTTTGTTTAAACTTATTTTCAATATGAAAAAAAAACCTCTTGTCTCTCACCTCTTTTTTATTACCATACCAGGTCGTCCTATGCACATCATCACCCAACCATTCGAACAGATATTTTTCTCACGCAAATGCAAATATCTGCCAGTCAGAGGTGCTTCAATCAATACAACATAGATTTCCCTCTCCTCCGCTTTTCCTCGACATTTTTCGTCAGTTCCAACCAAACTGTCGTCTCCGGAAATGTATGAAGCTTGGATGTACCTGAACCATCCTGCGATTATTTCTTTGATAGTTGTCTACACCATATTCCTATGTCTTCTGCCATGGTTGTGCACGTGCAAGCAGGATCGCATCTCGCCGATTGAAGAAGAAGTGCCACGTCACATTGTTTGATGCGTATGTTCTCTGTTGAGTTTCGCGTTTTTCTTTGAATGAATTCATTTGTTACAAGTTTTTTACATTTTAAAACTTTCAGATTATGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGAACTTTGTTGTTGCGTGCGAGTCTGGGGGCAATCCCTATAAACCGTGAAAACAAATGAGTTTGCAAAAACGATATCTCGAACTGCTCTCATGTATTGATTGCATTGCACAGAACCTATTGCCTTTTCCACAAATGAACCGTCAGATGTCATCTGAGAAACATAAGCAGGGGTAGAAAGCATAAGGTTTTTTATCAATAAAAGTGGACATTCCACCATCGCACGTTCCGCCATCGAGACACCGCCACCTTGATAATGGTGCATAGATTTTGCATAGAGGAGCTGTAAAAATAGTTTTAGGGTTT</canonical>
            <polymorphic>CAATTTCAACATTCTTGATGTTTTCTGTAACATAGCATTTCAACCGGTCGTTGTTTCAGTCACCTTTGTTTAAACTTATTTTCAATATGAAAAAAAAACCTCTTGTCTCTCACCTCTTTTTTATTACCATACCAGGTCGTCCTATGCACATCATCACCCAACCATTCGAACAGATATTTTTCTCACGCAAATGCAAATATCTGCCAGTCAGAGGTGCTTCAATCAATACAACATAGATTTCCCTCTCCTCCGCTTTTCCTCGACATTTTTCGTCAGTTCCAACCAAACTGTCGTCTCCGGAAATGTATGAAGCTTGGATGTACCTGAACCATCCTGCGATTATTTCTTTGATAGTTGTCTACACCATATTCCTATGTCTTCTGCCATGGTTGTGCACGTGCAAGCAGGATCGCATCTCGCCGATTGAAGAAGAAGTGCCACGTCACATTGTTTGATGCGTATGTTCTCTGTTGAGTTTCGCGTTTTTCTTTGAATGAATYCATTTGTTACAAGTTTTTTACATTTTAAAACTTTCAGATTATGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGAACTTTGTTGTTGCGTGCGAGTCTGGGGGCAATCCCTATAAACCGTGAAAACAAATGAGTTTGCAAAAACGATATCTCGAACTGCTCTCATGTATTGATTGCATTGCACAGAACCTATTGCCTTTTCCACAAATGAACCGTCAGATGTCATCTGAGAAACATAAGCAGGGGTAGAAAGCATAAGGTTTTTTATCAATAAAAGTGGACATTCCACCATCGCACGTTCCGCCATCGAGACACCGCCACCTTGATAATGGTGCATAGATTTTGCATAGAGGAGCTGTAAAAATAGTTTTAGGGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>496 403 101</canonical_bands>
                <polymorphic_bands>597 403</polymorphic_bands>
            </assay>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>495 311 96 92 5 1</canonical_bands>
                <polymorphic_bands>591 311 92 5 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTTGATGCGTATGTTCTCT</pcr_primer_p1>
		<pcr_primer_p2>TCTACAATTAAATCTACGCGATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTTTGATGCGTATGTTCTCTGTTGAGTTTCGCGTTTTTCTTTGAATGAATTCATTTGTTACAAGTTTTTTACATTTTAAAACTTTCAGATTATGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGA</canonical_amplicon>
		<polymorphic_amplicon>TGTTTGATGCGTATGTTCTCTGTTGAGTTTCGCGTTTTTCTTTGAATGAATYCATTTGTTACAAGTTTTTTACATTTTAAAACTTTCAGATTATGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29767</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>337300</contig_pos>
        <strand></strand>
        <context>ATAAAAAGTT[C/T]TAGGAAGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTACATTTTAAAACTTTCAGATTATGTGGAATAGCTGATAAAAAGTT</left_flank>
        <right_flank>TAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTTTAAACTTATTTTCAATATGAAAAAAAAACCTCTTGTCTCTCACCTCTTTTTTATTACCATACCAGGTCGTCCTATGCACATCATCACCCAACCATTCGAACAGATATTTTTCTCACGCAAATGCAAATATCTGCCAGTCAGAGGTGCTTCAATCAATACAACATAGATTTCCCTCTCCTCCGCTTTTCCTCGACATTTTTCGTCAGTTCCAACCAAACTGTCGTCTCCGGAAATGTATGAAGCTTGGATGTACCTGAACCATCCTGCGATTATTTCTTTGATAGTTGTCTACACCATATTCCTATGTCTTCTGCCATGGTTGTGCACGTGCAAGCAGGATCGCATCTCGCCGATTGAAGAAGAAGTGCCACGTCACATTGTTTGATGCGTATGTTCTCTGTTGAGTTTCGCGTTTTTCTTTGAATGAATTCATTTGTTACAAGTTTTTTACATTTTAAAACTTTCAGATTATGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGAACTTTGTTGTTGCGTGCGAGTCTGGGGGCAATCCCTATAAACCGTGAAAACAAATGAGTTTGCAAAAACGATATCTCGAACTGCTCTCATGTATTGATTGCATTGCACAGAACCTATTGCCTTTTCCACAAATGAACCGTCAGATGTCATCTGAGAAACATAAGCAGGGGTAGAAAGCATAAGGTTTTTTATCAATAAAAGTGGACATTCCACCATCGCACGTTCCGCCATCGAGACACCGCCACCTTGATAATGGTGCATAGATTTTGCATAGAGGAGCTGTAAAAATAGTTTTAGGGTTTTTGAGGATGTTCCCCTAACAGCACCTGTATTAAAGTTGGGTTAAGTAAACTTTCGAGAATCCGAA</canonical>
            <polymorphic>TTGTTTAAACTTATTTTCAATATGAAAAAAAAACCTCTTGTCTCTCACCTCTTTTTTATTACCATACCAGGTCGTCCTATGCACATCATCACCCAACCATTCGAACAGATATTTTTCTCACGCAAATGCAAATATCTGCCAGTCAGAGGTGCTTCAATCAATACAACATAGATTTCCCTCTCCTCCGCTTTTCCTCGACATTTTTCGTCAGTTCCAACCAAACTGTCGTCTCCGGAAATGTATGAAGCTTGGATGTACCTGAACCATCCTGCGATTATTTCTTTGATAGTTGTCTACACCATATTCCTATGTCTTCTGCCATGGTTGTGCACGTGCAAGCAGGATCGCATCTCGCCGATTGAAGAAGAAGTGCCACGTCACATTGTTTGATGCGTATGTTCTCTGTTGAGTTTCGCGTTTTTCTTTGAATGAATTCATTTGTTACAAGTTTTTTACATTTTAAAACTTTCAGATTATGTGGAATAGCTGATAAAAAGTTYTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGAACTTTGTTGTTGCGTGCGAGTCTGGGGGCAATCCCTATAAACCGTGAAAACAAATGAGTTTGCAAAAACGATATCTCGAACTGCTCTCATGTATTGATTGCATTGCACAGAACCTATTGCCTTTTCCACAAATGAACCGTCAGATGTCATCTGAGAAACATAAGCAGGGGTAGAAAGCATAAGGTTTTTTATCAATAAAAGTGGACATTCCACCATCGCACGTTCCGCCATCGAGACACCGCCACCTTGATAATGGTGCATAGATTTTGCATAGAGGAGCTGTAAAAATAGTTTTAGGGTTTTTGAGGATGTTCCCCTAACAGCACCTGTATTAAAGTTGGGTTAAGTAAACTTTCGAGAATCCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTTGATGCGTATGTTCTCT</pcr_primer_p1>
		<pcr_primer_p2>TCTACAATTAAATCTACGCGATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTTTGATGCGTATGTTCTCTGTTGAGTTTCGCGTTTTTCTTTGAATGAATTCATTTGTTACAAGTTTTTTACATTTTAAAACTTTCAGATTATGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGA</canonical_amplicon>
		<polymorphic_amplicon>TGTTTGATGCGTATGTTCTCTGTTGAGTTTCGCGTTTTTCTTTGAATGAATTCATTTGTTACAAGTTTTTTACATTTTAAAACTTTCAGATTATGTGGAATAGCTGATAAAAAGTTYTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29768</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>337320</contig_pos>
        <strand></strand>
        <context>TCAAAATGTC[G/A]AAATGTAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAGATTATGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTC</left_flank>
        <right_flank>AAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGAAAAAAAAACCTCTTGTCTCTCACCTCTTTTTTATTACCATACCAGGTCGTCCTATGCACATCATCACCCAACCATTCGAACAGATATTTTTCTCACGCAAATGCAAATATCTGCCAGTCAGAGGTGCTTCAATCAATACAACATAGATTTCCCTCTCCTCCGCTTTTCCTCGACATTTTTCGTCAGTTCCAACCAAACTGTCGTCTCCGGAAATGTATGAAGCTTGGATGTACCTGAACCATCCTGCGATTATTTCTTTGATAGTTGTCTACACCATATTCCTATGTCTTCTGCCATGGTTGTGCACGTGCAAGCAGGATCGCATCTCGCCGATTGAAGAAGAAGTGCCACGTCACATTGTTTGATGCGTATGTTCTCTGTTGAGTTTCGCGTTTTTCTTTGAATGAATTCATTTGTTACAAGTTTTTTACATTTTAAAACTTTCAGATTATGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGAACTTTGTTGTTGCGTGCGAGTCTGGGGGCAATCCCTATAAACCGTGAAAACAAATGAGTTTGCAAAAACGATATCTCGAACTGCTCTCATGTATTGATTGCATTGCACAGAACCTATTGCCTTTTCCACAAATGAACCGTCAGATGTCATCTGAGAAACATAAGCAGGGGTAGAAAGCATAAGGTTTTTTATCAATAAAAGTGGACATTCCACCATCGCACGTTCCGCCATCGAGACACCGCCACCTTGATAATGGTGCATAGATTTTGCATAGAGGAGCTGTAAAAATAGTTTTAGGGTTTTTGAGGATGTTCCCCTAACAGCACCTGTATTAAAGTTGGGTTAAGTAAACTTTCGAGAATCCGAACTTAGAACACCTATTTTTTC</canonical>
            <polymorphic>TATGAAAAAAAAACCTCTTGTCTCTCACCTCTTTTTTATTACCATACCAGGTCGTCCTATGCACATCATCACCCAACCATTCGAACAGATATTTTTCTCACGCAAATGCAAATATCTGCCAGTCAGAGGTGCTTCAATCAATACAACATAGATTTCCCTCTCCTCCGCTTTTCCTCGACATTTTTCGTCAGTTCCAACCAAACTGTCGTCTCCGGAAATGTATGAAGCTTGGATGTACCTGAACCATCCTGCGATTATTTCTTTGATAGTTGTCTACACCATATTCCTATGTCTTCTGCCATGGTTGTGCACGTGCAAGCAGGATCGCATCTCGCCGATTGAAGAAGAAGTGCCACGTCACATTGTTTGATGCGTATGTTCTCTGTTGAGTTTCGCGTTTTTCTTTGAATGAATTCATTTGTTACAAGTTTTTTACATTTTAAAACTTTCAGATTATGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCRAAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGAACTTTGTTGTTGCGTGCGAGTCTGGGGGCAATCCCTATAAACCGTGAAAACAAATGAGTTTGCAAAAACGATATCTCGAACTGCTCTCATGTATTGATTGCATTGCACAGAACCTATTGCCTTTTCCACAAATGAACCGTCAGATGTCATCTGAGAAACATAAGCAGGGGTAGAAAGCATAAGGTTTTTTATCAATAAAAGTGGACATTCCACCATCGCACGTTCCGCCATCGAGACACCGCCACCTTGATAATGGTGCATAGATTTTGCATAGAGGAGCTGTAAAAATAGTTTTAGGGTTTTTGAGGATGTTCCCCTAACAGCACCTGTATTAAAGTTGGGTTAAGTAAACTTTCGAGAATCCGAACTTAGAACACCTATTTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>323 155 124 110 94 82 81 31</canonical_bands>
                <polymorphic_bands>404 155 124 110 94 82 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTTGATGCGTATGTTCTCT</pcr_primer_p1>
		<pcr_primer_p2>TCTACAATTAAATCTACGCGATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTTTGATGCGTATGTTCTCTGTTGAGTTTCGCGTTTTTCTTTGAATGAATTCATTTGTTACAAGTTTTTTACATTTTAAAACTTTCAGATTATGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGA</canonical_amplicon>
		<polymorphic_amplicon>TGTTTGATGCGTATGTTCTCTGTTGAGTTTCGCGTTTTTCTTTGAATGAATTCATTTGTTACAAGTTTTTTACATTTTAAAACTTTCAGATTATGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCRAAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29769</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>337335</contig_pos>
        <strand></strand>
        <context>GTAAATTGAA[T/A]TTTCAAAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAA</left_flank>
        <right_flank>TTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCAC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTGTCTCTCACCTCTTTTTTATTACCATACCAGGTCGTCCTATGCACATCATCACCCAACCATTCGAACAGATATTTTTCTCACGCAAATGCAAATATCTGCCAGTCAGAGGTGCTTCAATCAATACAACATAGATTTCCCTCTCCTCCGCTTTTCCTCGACATTTTTCGTCAGTTCCAACCAAACTGTCGTCTCCGGAAATGTATGAAGCTTGGATGTACCTGAACCATCCTGCGATTATTTCTTTGATAGTTGTCTACACCATATTCCTATGTCTTCTGCCATGGTTGTGCACGTGCAAGCAGGATCGCATCTCGCCGATTGAAGAAGAAGTGCCACGTCACATTGTTTGATGCGTATGTTCTCTGTTGAGTTTCGCGTTTTTCTTTGAATGAATTCATTTGTTACAAGTTTTTTACATTTTAAAACTTTCAGATTATGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGAACTTTGTTGTTGCGTGCGAGTCTGGGGGCAATCCCTATAAACCGTGAAAACAAATGAGTTTGCAAAAACGATATCTCGAACTGCTCTCATGTATTGATTGCATTGCACAGAACCTATTGCCTTTTCCACAAATGAACCGTCAGATGTCATCTGAGAAACATAAGCAGGGGTAGAAAGCATAAGGTTTTTTATCAATAAAAGTGGACATTCCACCATCGCACGTTCCGCCATCGAGACACCGCCACCTTGATAATGGTGCATAGATTTTGCATAGAGGAGCTGTAAAAATAGTTTTAGGGTTTTTGAGGATGTTCCCCTAACAGCACCTGTATTAAAGTTGGGTTAAGTAAACTTTCGAGAATCCGAACTTAGAACACCTATTTTTTCACTATCCTACTCACT</canonical>
            <polymorphic>TCTTGTCTCTCACCTCTTTTTTATTACCATACCAGGTCGTCCTATGCACATCATCACCCAACCATTCGAACAGATATTTTTCTCACGCAAATGCAAATATCTGCCAGTCAGAGGTGCTTCAATCAATACAACATAGATTTCCCTCTCCTCCGCTTTTCCTCGACATTTTTCGTCAGTTCCAACCAAACTGTCGTCTCCGGAAATGTATGAAGCTTGGATGTACCTGAACCATCCTGCGATTATTTCTTTGATAGTTGTCTACACCATATTCCTATGTCTTCTGCCATGGTTGTGCACGTGCAAGCAGGATCGCATCTCGCCGATTGAAGAAGAAGTGCCACGTCACATTGTTTGATGCGTATGTTCTCTGTTGAGTTTCGCGTTTTTCTTTGAATGAATTCATTTGTTACAAGTTTTTTACATTTTAAAACTTTCAGATTATGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAAWTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGAACTTTGTTGTTGCGTGCGAGTCTGGGGGCAATCCCTATAAACCGTGAAAACAAATGAGTTTGCAAAAACGATATCTCGAACTGCTCTCATGTATTGATTGCATTGCACAGAACCTATTGCCTTTTCCACAAATGAACCGTCAGATGTCATCTGAGAAACATAAGCAGGGGTAGAAAGCATAAGGTTTTTTATCAATAAAAGTGGACATTCCACCATCGCACGTTCCGCCATCGAGACACCGCCACCTTGATAATGGTGCATAGATTTTGCATAGAGGAGCTGTAAAAATAGTTTTAGGGTTTTTGAGGATGTTCCCCTAACAGCACCTGTATTAAAGTTGGGTTAAGTAAACTTTCGAGAATCCGAACTTAGAACACCTATTTTTTCACTATCCTACTCACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>503 396 101</canonical_bands>
                <polymorphic_bands>604 396</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>411 396 96 92 5</canonical_bands>
                <polymorphic_bands>411 396 97 96</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGGAATAGCTGATAAAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>ATACATGAGAGCAGTTCGAGATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGAACTTTGTTGTTGCGTGCGAGTCTGGGGGCAATCCCTATAAACCGTGAAAACAAATGAGTTTGCAAAAACGATATCTCGAACTGCTCTCATGTAT</canonical_amplicon>
		<polymorphic_amplicon>TGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAAWTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGAACTTTGTTGTTGCGTGCGAGTCTGGGGGCAATCCCTATAAACCGTGAAAACAAATGAGTTTGCAAAAACGATATCTCGAACTGCTCTCATGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29770</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>337352</contig_pos>
        <strand></strand>
        <context>AGTTAAGTAG[T/G]GGAGACATAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAG</left_flank>
        <right_flank>GGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTATTACCATACCAGGTCGTCCTATGCACATCATCACCCAACCATTCGAACAGATATTTTTCTCACGCAAATGCAAATATCTGCCAGTCAGAGGTGCTTCAATCAATACAACATAGATTTCCCTCTCCTCCGCTTTTCCTCGACATTTTTCGTCAGTTCCAACCAAACTGTCGTCTCCGGAAATGTATGAAGCTTGGATGTACCTGAACCATCCTGCGATTATTTCTTTGATAGTTGTCTACACCATATTCCTATGTCTTCTGCCATGGTTGTGCACGTGCAAGCAGGATCGCATCTCGCCGATTGAAGAAGAAGTGCCACGTCACATTGTTTGATGCGTATGTTCTCTGTTGAGTTTCGCGTTTTTCTTTGAATGAATTCATTTGTTACAAGTTTTTTACATTTTAAAACTTTCAGATTATGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGAACTTTGTTGTTGCGTGCGAGTCTGGGGGCAATCCCTATAAACCGTGAAAACAAATGAGTTTGCAAAAACGATATCTCGAACTGCTCTCATGTATTGATTGCATTGCACAGAACCTATTGCCTTTTCCACAAATGAACCGTCAGATGTCATCTGAGAAACATAAGCAGGGGTAGAAAGCATAAGGTTTTTTATCAATAAAAGTGGACATTCCACCATCGCACGTTCCGCCATCGAGACACCGCCACCTTGATAATGGTGCATAGATTTTGCATAGAGGAGCTGTAAAAATAGTTTTAGGGTTTTTGAGGATGTTCCCCTAACAGCACCTGTATTAAAGTTGGGTTAAGTAAACTTTCGAGAATCCGAACTTAGAACACCTATTTTTTCACTATCCTACTCACTAAAAGTAAAATGTTCAT</canonical>
            <polymorphic>TTTTTATTACCATACCAGGTCGTCCTATGCACATCATCACCCAACCATTCGAACAGATATTTTTCTCACGCAAATGCAAATATCTGCCAGTCAGAGGTGCTTCAATCAATACAACATAGATTTCCCTCTCCTCCGCTTTTCCTCGACATTTTTCGTCAGTTCCAACCAAACTGTCGTCTCCGGAAATGTATGAAGCTTGGATGTACCTGAACCATCCTGCGATTATTTCTTTGATAGTTGTCTACACCATATTCCTATGTCTTCTGCCATGGTTGTGCACGTGCAAGCAGGATCGCATCTCGCCGATTGAAGAAGAAGTGCCACGTCACATTGTTTGATGCGTATGTTCTCTGTTGAGTTTCGCGTTTTTCTTTGAATGAATTCATTTGTTACAAGTTTTTTACATTTTAAAACTTTCAGATTATGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAGKGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGAACTTTGTTGTTGCGTGCGAGTCTGGGGGCAATCCCTATAAACCGTGAAAACAAATGAGTTTGCAAAAACGATATCTCGAACTGCTCTCATGTATTGATTGCATTGCACAGAACCTATTGCCTTTTCCACAAATGAACCGTCAGATGTCATCTGAGAAACATAAGCAGGGGTAGAAAGCATAAGGTTTTTTATCAATAAAAGTGGACATTCCACCATCGCACGTTCCGCCATCGAGACACCGCCACCTTGATAATGGTGCATAGATTTTGCATAGAGGAGCTGTAAAAATAGTTTTAGGGTTTTTGAGGATGTTCCCCTAACAGCACCTGTATTAAAGTTGGGTTAAGTAAACTTTCGAGAATCCGAACTTAGAACACCTATTTTTTCACTATCCTACTCACTAAAAGTAAAATGTTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>147 100 75 73 67 65 61 51 37 31 31 31 30 29 21 19 18 18 14 13 12 12 9 8 8 6 5 4 3 2</canonical_bands>
                <polymorphic_bands>147 100 91 75 67 65 61 51 37 31 31 31 30 29 21 19 18 14 13 12 12 9 8 8 6 5 4 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGGAATAGCTGATAAAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>ATACATGAGAGCAGTTCGAGATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGAACTTTGTTGTTGCGTGCGAGTCTGGGGGCAATCCCTATAAACCGTGAAAACAAATGAGTTTGCAAAAACGATATCTCGAACTGCTCTCATGTAT</canonical_amplicon>
		<polymorphic_amplicon>TGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAGKGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGAACTTTGTTGTTGCGTGCGAGTCTGGGGGCAATCCCTATAAACCGTGAAAACAAATGAGTTTGCAAAAACGATATCTCGAACTGCTCTCATGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29771</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>337405</contig_pos>
        <strand></strand>
        <context>TGTTTCGAAC[A/G]ATAATAATCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAAC</left_flank>
        <right_flank>ATAATAATCGCGTAGATTTAATTGTAGAACTTTGTTGTTGCGTGCGAGTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGATATTTTTCTCACGCAAATGCAAATATCTGCCAGTCAGAGGTGCTTCAATCAATACAACATAGATTTCCCTCTCCTCCGCTTTTCCTCGACATTTTTCGTCAGTTCCAACCAAACTGTCGTCTCCGGAAATGTATGAAGCTTGGATGTACCTGAACCATCCTGCGATTATTTCTTTGATAGTTGTCTACACCATATTCCTATGTCTTCTGCCATGGTTGTGCACGTGCAAGCAGGATCGCATCTCGCCGATTGAAGAAGAAGTGCCACGTCACATTGTTTGATGCGTATGTTCTCTGTTGAGTTTCGCGTTTTTCTTTGAATGAATTCATTTGTTACAAGTTTTTTACATTTTAAAACTTTCAGATTATGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGAACTTTGTTGTTGCGTGCGAGTCTGGGGGCAATCCCTATAAACCGTGAAAACAAATGAGTTTGCAAAAACGATATCTCGAACTGCTCTCATGTATTGATTGCATTGCACAGAACCTATTGCCTTTTCCACAAATGAACCGTCAGATGTCATCTGAGAAACATAAGCAGGGGTAGAAAGCATAAGGTTTTTTATCAATAAAAGTGGACATTCCACCATCGCACGTTCCGCCATCGAGACACCGCCACCTTGATAATGGTGCATAGATTTTGCATAGAGGAGCTGTAAAAATAGTTTTAGGGTTTTTGAGGATGTTCCCCTAACAGCACCTGTATTAAAGTTGGGTTAAGTAAACTTTCGAGAATCCGAACTTAGAACACCTATTTTTTCACTATCCTACTCACTAAAAGTAAAATGTTCATCTATACAGAACGAAAAACAAACTTTTGTGACCTAATTTTTGAAAAATTATTAT</canonical>
            <polymorphic>CAGATATTTTTCTCACGCAAATGCAAATATCTGCCAGTCAGAGGTGCTTCAATCAATACAACATAGATTTCCCTCTCCTCCGCTTTTCCTCGACATTTTTCGTCAGTTCCAACCAAACTGTCGTCTCCGGAAATGTATGAAGCTTGGATGTACCTGAACCATCCTGCGATTATTTCTTTGATAGTTGTCTACACCATATTCCTATGTCTTCTGCCATGGTTGTGCACGTGCAAGCAGGATCGCATCTCGCCGATTGAAGAAGAAGTGCCACGTCACATTGTTTGATGCGTATGTTCTCTGTTGAGTTTCGCGTTTTTCTTTGAATGAATTCATTTGTTACAAGTTTTTTACATTTTAAAACTTTCAGATTATGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACRATAATAATCGCGTAGATTTAATTGTAGAACTTTGTTGTTGCGTGCGAGTCTGGGGGCAATCCCTATAAACCGTGAAAACAAATGAGTTTGCAAAAACGATATCTCGAACTGCTCTCATGTATTGATTGCATTGCACAGAACCTATTGCCTTTTCCACAAATGAACCGTCAGATGTCATCTGAGAAACATAAGCAGGGGTAGAAAGCATAAGGTTTTTTATCAATAAAAGTGGACATTCCACCATCGCACGTTCCGCCATCGAGACACCGCCACCTTGATAATGGTGCATAGATTTTGCATAGAGGAGCTGTAAAAATAGTTTTAGGGTTTTTGAGGATGTTCCCCTAACAGCACCTGTATTAAAGTTGGGTTAAGTAAACTTTCGAGAATCCGAACTTAGAACACCTATTTTTTCACTATCCTACTCACTAAAAGTAAAATGTTCATCTATACAGAACGAAAAACAAACTTTTGTGACCTAATTTTTGAAAAATTATTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGGAATAGCTGATAAAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>ATACATGAGAGCAGTTCGAGATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGAACTTTGTTGTTGCGTGCGAGTCTGGGGGCAATCCCTATAAACCGTGAAAACAAATGAGTTTGCAAAAACGATATCTCGAACTGCTCTCATGTAT</canonical_amplicon>
		<polymorphic_amplicon>TGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACRATAATAATCGCGTAGATTTAATTGTAGAACTTTGTTGTTGCGTGCGAGTCTGGGGGCAATCCCTATAAACCGTGAAAACAAATGAGTTTGCAAAAACGATATCTCGAACTGCTCTCATGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29772</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>337435</contig_pos>
        <strand></strand>
        <context>AATTGTAGAA[C/G]TTTGTTGTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGAA</left_flank>
        <right_flank>TTTGTTGTTGCGTGCGAGTCTGGGGGCAATCCCTATAAACCGTGAAAACA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGCCAGTCAGAGGTGCTTCAATCAATACAACATAGATTTCCCTCTCCTCCGCTTTTCCTCGACATTTTTCGTCAGTTCCAACCAAACTGTCGTCTCCGGAAATGTATGAAGCTTGGATGTACCTGAACCATCCTGCGATTATTTCTTTGATAGTTGTCTACACCATATTCCTATGTCTTCTGCCATGGTTGTGCACGTGCAAGCAGGATCGCATCTCGCCGATTGAAGAAGAAGTGCCACGTCACATTGTTTGATGCGTATGTTCTCTGTTGAGTTTCGCGTTTTTCTTTGAATGAATTCATTTGTTACAAGTTTTTTACATTTTAAAACTTTCAGATTATGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGAACTTTGTTGTTGCGTGCGAGTCTGGGGGCAATCCCTATAAACCGTGAAAACAAATGAGTTTGCAAAAACGATATCTCGAACTGCTCTCATGTATTGATTGCATTGCACAGAACCTATTGCCTTTTCCACAAATGAACCGTCAGATGTCATCTGAGAAACATAAGCAGGGGTAGAAAGCATAAGGTTTTTTATCAATAAAAGTGGACATTCCACCATCGCACGTTCCGCCATCGAGACACCGCCACCTTGATAATGGTGCATAGATTTTGCATAGAGGAGCTGTAAAAATAGTTTTAGGGTTTTTGAGGATGTTCCCCTAACAGCACCTGTATTAAAGTTGGGTTAAGTAAACTTTCGAGAATCCGAACTTAGAACACCTATTTTTTCACTATCCTACTCACTAAAAGTAAAATGTTCATCTATACAGAACGAAAAACAAACTTTTGTGACCTAATTTTTGAAAAATTATTATTAGGCTGAAAGTTCCTATCAGTAGAAGATC</canonical>
            <polymorphic>CTGCCAGTCAGAGGTGCTTCAATCAATACAACATAGATTTCCCTCTCCTCCGCTTTTCCTCGACATTTTTCGTCAGTTCCAACCAAACTGTCGTCTCCGGAAATGTATGAAGCTTGGATGTACCTGAACCATCCTGCGATTATTTCTTTGATAGTTGTCTACACCATATTCCTATGTCTTCTGCCATGGTTGTGCACGTGCAAGCAGGATCGCATCTCGCCGATTGAAGAAGAAGTGCCACGTCACATTGTTTGATGCGTATGTTCTCTGTTGAGTTTCGCGTTTTTCTTTGAATGAATTCATTTGTTACAAGTTTTTTACATTTTAAAACTTTCAGATTATGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGAASTTTGTTGTTGCGTGCGAGTCTGGGGGCAATCCCTATAAACCGTGAAAACAAATGAGTTTGCAAAAACGATATCTCGAACTGCTCTCATGTATTGATTGCATTGCACAGAACCTATTGCCTTTTCCACAAATGAACCGTCAGATGTCATCTGAGAAACATAAGCAGGGGTAGAAAGCATAAGGTTTTTTATCAATAAAAGTGGACATTCCACCATCGCACGTTCCGCCATCGAGACACCGCCACCTTGATAATGGTGCATAGATTTTGCATAGAGGAGCTGTAAAAATAGTTTTAGGGTTTTTGAGGATGTTCCCCTAACAGCACCTGTATTAAAGTTGGGTTAAGTAAACTTTCGAGAATCCGAACTTAGAACACCTATTTTTTCACTATCCTACTCACTAAAAGTAAAATGTTCATCTATACAGAACGAAAAACAAACTTTTGTGACCTAATTTTTGAAAAATTATTATTAGGCTGAAAGTTCCTATCAGTAGAAGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGGAATAGCTGATAAAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>ATACATGAGAGCAGTTCGAGATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGAACTTTGTTGTTGCGTGCGAGTCTGGGGGCAATCCCTATAAACCGTGAAAACAAATGAGTTTGCAAAAACGATATCTCGAACTGCTCTCATGTAT</canonical_amplicon>
		<polymorphic_amplicon>TGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGAASTTTGTTGTTGCGTGCGAGTCTGGGGGCAATCCCTATAAACCGTGAAAACAAATGAGTTTGCAAAAACGATATCTCGAACTGCTCTCATGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29773</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>337635</contig_pos>
        <strand></strand>
        <context>TCAATAAAAG[T/C]GGACATTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGAGAAACATAAGCAGGGGTAGAAAGCATAAGGTTTTTTATCAATAAAAG</left_flank>
        <right_flank>GGACATTCCACCATCGCACGTTCCGCCATCGAGACACCGCCACCTTGATA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAGCAGGATCGCATCTCGCCGATTGAAGAAGAAGTGCCACGTCACATTGTTTGATGCGTATGTTCTCTGTTGAGTTTCGCGTTTTTCTTTGAATGAATTCATTTGTTACAAGTTTTTTACATTTTAAAACTTTCAGATTATGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGAACTTTGTTGTTGCGTGCGAGTCTGGGGGCAATCCCTATAAACCGTGAAAACAAATGAGTTTGCAAAAACGATATCTCGAACTGCTCTCATGTATTGATTGCATTGCACAGAACCTATTGCCTTTTCCACAAATGAACCGTCAGATGTCATCTGAGAAACATAAGCAGGGGTAGAAAGCATAAGGTTTTTTATCAATAAAAGTGGACATTCCACCATCGCACGTTCCGCCATCGAGACACCGCCACCTTGATAATGGTGCATAGATTTTGCATAGAGGAGCTGTAAAAATAGTTTTAGGGTTTTTGAGGATGTTCCCCTAACAGCACCTGTATTAAAGTTGGGTTAAGTAAACTTTCGAGAATCCGAACTTAGAACACCTATTTTTTCACTATCCTACTCACTAAAAGTAAAATGTTCATCTATACAGAACGAAAAACAAACTTTTGTGACCTAATTTTTGAAAAATTATTATTAGGCTGAAAGTTCCTATCAGTAGAAGATCCAACACATCTAATGTGATATCTCTAGCTTTATAGAGCACGACAAAACTTTTGTGACCTATTTTCCTTTTTAACTTGACCTCATTCGAAATTCTCATCCTTCTATGATTTCATCTCTACGAATTTCCTTTTTCAAAATTTGAAATCTTTCCGAATTCCATCCCTCAAGTGTTACCCAGCCCTCCCCATTCACCTAATTTGT</canonical>
            <polymorphic>CAAGCAGGATCGCATCTCGCCGATTGAAGAAGAAGTGCCACGTCACATTGTTTGATGCGTATGTTCTCTGTTGAGTTTCGCGTTTTTCTTTGAATGAATTCATTTGTTACAAGTTTTTTACATTTTAAAACTTTCAGATTATGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGAACTTTGTTGTTGCGTGCGAGTCTGGGGGCAATCCCTATAAACCGTGAAAACAAATGAGTTTGCAAAAACGATATCTCGAACTGCTCTCATGTATTGATTGCATTGCACAGAACCTATTGCCTTTTCCACAAATGAACCGTCAGATGTCATCTGAGAAACATAAGCAGGGGTAGAAAGCATAAGGTTTTTTATCAATAAAAGYGGACATTCCACCATCGCACGTTCCGCCATCGAGACACCGCCACCTTGATAATGGTGCATAGATTTTGCATAGAGGAGCTGTAAAAATAGTTTTAGGGTTTTTGAGGATGTTCCCCTAACAGCACCTGTATTAAAGTTGGGTTAAGTAAACTTTCGAGAATCCGAACTTAGAACACCTATTTTTTCACTATCCTACTCACTAAAAGTAAAATGTTCATCTATACAGAACGAAAAACAAACTTTTGTGACCTAATTTTTGAAAAATTATTATTAGGCTGAAAGTTCCTATCAGTAGAAGATCCAACACATCTAATGTGATATCTCTAGCTTTATAGAGCACGACAAAACTTTTGTGACCTATTTTCCTTTTTAACTTGACCTCATTCGAAATTCTCATCCTTCTATGATTTCATCTCTACGAATTTCCTTTTTCAAAATTTGAAATCTTTCCGAATTCCATCCCTCAAGTGTTACCCAGCCCTCCCCATTCACCTAATTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>115 100 75 73 67 65 61 59 51 48 37 30 22 21 21 18 18 16 14 13 12 12 11 10 9 8 6 5 3</canonical_bands>
                <polymorphic_bands>115 100 84 73 67 65 61 59 51 48 37 30 22 21 21 18 18 16 14 13 12 12 11 10 8 6 5 3</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 353 146</canonical_bands>
                <polymorphic_bands>647 353</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATCTCGAACTGCTCTCATGTA</pcr_primer_p1>
		<pcr_primer_p2>TCCTCAAAAACCCTAAAACTATT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ATATCTCGAACTGCTCTCATGTATTGATTGCATTGCACAGAACCTATTGCCTTTTCCACAAATGAACCGTCAGATGTCATCTGAGAAACATAAGCAGGGGTAGAAAGCATAAGGTTTTTTATCAATAAAAGTGGACATTCCACCATCGCACGTTCCGCCATCGAGACACCGCCACCTTGATAATGGTGCATAGATTTTGCATAGAGGAGCTGTAAAAATAGTTTTAGGGTTTTTGAGGA</canonical_amplicon>
		<polymorphic_amplicon>ATATCTCGAACTGCTCTCATGTATTGATTGCATTGCACAGAACCTATTGCCTTTTCCACAAATGAACCGTCAGATGTCATCTGAGAAACATAAGCAGGGGTAGAAAGCATAAGGTTTTTTATCAATAAAAGYGGACATTCCACCATCGCACGTTCCGCCATCGAGACACCGCCACCTTGATAATGGTGCATAGATTTTGCATAGAGGAGCTGTAAAAATAGTTTTAGGGTTTTTGAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29774</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>337658</contig_pos>
        <strand></strand>
        <context>ATCGCACGTT[C/T]CGCCATCGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGCATAAGGTTTTTTATCAATAAAAGTGGACATTCCACCATCGCACGTT</left_flank>
        <right_flank>CGCCATCGAGACACCGCCACCTTGATAATGGTGCATAGATTTTGCATAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAAGAAGAAGTGCCACGTCACATTGTTTGATGCGTATGTTCTCTGTTGAGTTTCGCGTTTTTCTTTGAATGAATTCATTTGTTACAAGTTTTTTACATTTTAAAACTTTCAGATTATGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGAACTTTGTTGTTGCGTGCGAGTCTGGGGGCAATCCCTATAAACCGTGAAAACAAATGAGTTTGCAAAAACGATATCTCGAACTGCTCTCATGTATTGATTGCATTGCACAGAACCTATTGCCTTTTCCACAAATGAACCGTCAGATGTCATCTGAGAAACATAAGCAGGGGTAGAAAGCATAAGGTTTTTTATCAATAAAAGTGGACATTCCACCATCGCACGTTCCGCCATCGAGACACCGCCACCTTGATAATGGTGCATAGATTTTGCATAGAGGAGCTGTAAAAATAGTTTTAGGGTTTTTGAGGATGTTCCCCTAACAGCACCTGTATTAAAGTTGGGTTAAGTAAACTTTCGAGAATCCGAACTTAGAACACCTATTTTTTCACTATCCTACTCACTAAAAGTAAAATGTTCATCTATACAGAACGAAAAACAAACTTTTGTGACCTAATTTTTGAAAAATTATTATTAGGCTGAAAGTTCCTATCAGTAGAAGATCCAACACATCTAATGTGATATCTCTAGCTTTATAGAGCACGACAAAACTTTTGTGACCTATTTTCCTTTTTAACTTGACCTCATTCGAAATTCTCATCCTTCTATGATTTCATCTCTACGAATTTCCTTTTTCAAAATTTGAAATCTTTCCGAATTCCATCCCTCAAGTGTTACCCAGCCCTCCCCATTCACCTAATTTGTTACCCGGACTTATAAAACCAACA</canonical>
            <polymorphic>TTGAAGAAGAAGTGCCACGTCACATTGTTTGATGCGTATGTTCTCTGTTGAGTTTCGCGTTTTTCTTTGAATGAATTCATTTGTTACAAGTTTTTTACATTTTAAAACTTTCAGATTATGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGAACTTTGTTGTTGCGTGCGAGTCTGGGGGCAATCCCTATAAACCGTGAAAACAAATGAGTTTGCAAAAACGATATCTCGAACTGCTCTCATGTATTGATTGCATTGCACAGAACCTATTGCCTTTTCCACAAATGAACCGTCAGATGTCATCTGAGAAACATAAGCAGGGGTAGAAAGCATAAGGTTTTTTATCAATAAAAGTGGACATTCCACCATCGCACGTTYCGCCATCGAGACACCGCCACCTTGATAATGGTGCATAGATTTTGCATAGAGGAGCTGTAAAAATAGTTTTAGGGTTTTTGAGGATGTTCCCCTAACAGCACCTGTATTAAAGTTGGGTTAAGTAAACTTTCGAGAATCCGAACTTAGAACACCTATTTTTTCACTATCCTACTCACTAAAAGTAAAATGTTCATCTATACAGAACGAAAAACAAACTTTTGTGACCTAATTTTTGAAAAATTATTATTAGGCTGAAAGTTCCTATCAGTAGAAGATCCAACACATCTAATGTGATATCTCTAGCTTTATAGAGCACGACAAAACTTTTGTGACCTATTTTCCTTTTTAACTTGACCTCATTCGAAATTCTCATCCTTCTATGATTTCATCTCTACGAATTTCCTTTTTCAAAATTTGAAATCTTTCCGAATTCCATCCCTCAAGTGTTACCCAGCCCTCCCCATTCACCTAATTTGTTACCCGGACTTATAAAACCAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>500 486 14</canonical_bands>
                <polymorphic_bands>514 486</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATCTCGAACTGCTCTCATGTA</pcr_primer_p1>
		<pcr_primer_p2>TCCTCAAAAACCCTAAAACTATT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ATATCTCGAACTGCTCTCATGTATTGATTGCATTGCACAGAACCTATTGCCTTTTCCACAAATGAACCGTCAGATGTCATCTGAGAAACATAAGCAGGGGTAGAAAGCATAAGGTTTTTTATCAATAAAAGTGGACATTCCACCATCGCACGTTCCGCCATCGAGACACCGCCACCTTGATAATGGTGCATAGATTTTGCATAGAGGAGCTGTAAAAATAGTTTTAGGGTTTTTGAGGA</canonical_amplicon>
		<polymorphic_amplicon>ATATCTCGAACTGCTCTCATGTATTGATTGCATTGCACAGAACCTATTGCCTTTTCCACAAATGAACCGTCAGATGTCATCTGAGAAACATAAGCAGGGGTAGAAAGCATAAGGTTTTTTATCAATAAAAGTGGACATTCCACCATCGCACGTTYCGCCATCGAGACACCGCCACCTTGATAATGGTGCATAGATTTTGCATAGAGGAGCTGTAAAAATAGTTTTAGGGTTTTTGAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29775</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>337710</contig_pos>
        <strand></strand>
        <context>TTGCATAGAG[G/T]AGCTGTAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCCATCGAGACACCGCCACCTTGATAATGGTGCATAGATTTTGCATAGAG</left_flank>
        <right_flank>AGCTGTAAAAATAGTTTTAGGGTTTTTGAGGATGTTCCCCTAACAGCACC</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGCGTTTTTCTTTGAATGAATTCATTTGTTACAAGTTTTTTACATTTTAAAACTTTCAGATTATGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGAACTTTGTTGTTGCGTGCGAGTCTGGGGGCAATCCCTATAAACCGTGAAAACAAATGAGTTTGCAAAAACGATATCTCGAACTGCTCTCATGTATTGATTGCATTGCACAGAACCTATTGCCTTTTCCACAAATGAACCGTCAGATGTCATCTGAGAAACATAAGCAGGGGTAGAAAGCATAAGGTTTTTTATCAATAAAAGTGGACATTCCACCATCGCACGTTCCGCCATCGAGACACCGCCACCTTGATAATGGTGCATAGATTTTGCATAGAGGAGCTGTAAAAATAGTTTTAGGGTTTTTGAGGATGTTCCCCTAACAGCACCTGTATTAAAGTTGGGTTAAGTAAACTTTCGAGAATCCGAACTTAGAACACCTATTTTTTCACTATCCTACTCACTAAAAGTAAAATGTTCATCTATACAGAACGAAAAACAAACTTTTGTGACCTAATTTTTGAAAAATTATTATTAGGCTGAAAGTTCCTATCAGTAGAAGATCCAACACATCTAATGTGATATCTCTAGCTTTATAGAGCACGACAAAACTTTTGTGACCTATTTTCCTTTTTAACTTGACCTCATTCGAAATTCTCATCCTTCTATGATTTCATCTCTACGAATTTCCTTTTTCAAAATTTGAAATCTTTCCGAATTCCATCCCTCAAGTGTTACCCAGCCCTCCCCATTCACCTAATTTGTTACCCGGACTTATAAAACCAACAAAACTACAAAGCTGACTGGAAAAAAGTTACATGTTGACCTATTTTAATTTTA</canonical>
            <polymorphic>TTTCGCGTTTTTCTTTGAATGAATTCATTTGTTACAAGTTTTTTACATTTTAAAACTTTCAGATTATGTGGAATAGCTGATAAAAAGTTCTAGGAAGTTTCAAAATGTCGAAATGTAAATTGAATTTTCAAAGTTAAGTAGTGGAGACATATTCATGAGTGATCTCAAAAGGCACAATAATAGTTGTTTCGAACAATAATAATCGCGTAGATTTAATTGTAGAACTTTGTTGTTGCGTGCGAGTCTGGGGGCAATCCCTATAAACCGTGAAAACAAATGAGTTTGCAAAAACGATATCTCGAACTGCTCTCATGTATTGATTGCATTGCACAGAACCTATTGCCTTTTCCACAAATGAACCGTCAGATGTCATCTGAGAAACATAAGCAGGGGTAGAAAGCATAAGGTTTTTTATCAATAAAAGTGGACATTCCACCATCGCACGTTCCGCCATCGAGACACCGCCACCTTGATAATGGTGCATAGATTTTGCATAGAGKAGCTGTAAAAATAGTTTTAGGGTTTTTGAGGATGTTCCCCTAACAGCACCTGTATTAAAGTTGGGTTAAGTAAACTTTCGAGAATCCGAACTTAGAACACCTATTTTTTCACTATCCTACTCACTAAAAGTAAAATGTTCATCTATACAGAACGAAAAACAAACTTTTGTGACCTAATTTTTGAAAAATTATTATTAGGCTGAAAGTTCCTATCAGTAGAAGATCCAACACATCTAATGTGATATCTCTAGCTTTATAGAGCACGACAAAACTTTTGTGACCTATTTTCCTTTTTAACTTGACCTCATTCGAAATTCTCATCCTTCTATGATTTCATCTCTACGAATTTCCTTTTTCAAAATTTGAAATCTTTCCGAATTCCATCCCTCAAGTGTTACCCAGCCCTCCCCATTCACCTAATTTGTTACCCGGACTTATAAAACCAACAAAACTACAAAGCTGACTGGAAAAAAGTTACATGTTGACCTATTTTAATTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGTCATCTGAGAAACATAAGC</pcr_primer_p1>
		<pcr_primer_p2>ATAGGTGTTCTAAGTTCGGATTC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GATGTCATCTGAGAAACATAAGCAGGGGTAGAAAGCATAAGGTTTTTTATCAATAAAAGTGGACATTCCACCATCGCACGTTCCGCCATCGAGACACCGCCACCTTGATAATGGTGCATAGATTTTGCATAGAGGAGCTGTAAAAATAGTTTTAGGGTTTTTGAGGATGTTCCCCTAACAGCACCTGTATTAAAGTTGGGTTAAGTAAACTTTCGAGAATCCGAACTTAGAACACCTAT</canonical_amplicon>
		<polymorphic_amplicon>GATGTCATCTGAGAAACATAAGCAGGGGTAGAAAGCATAAGGTTTTTTATCAATAAAAGTGGACATTCCACCATCGCACGTTCCGCCATCGAGACACCGCCACCTTGATAATGGTGCATAGATTTTGCATAGAGKAGCTGTAAAAATAGTTTTAGGGTTTTTGAGGATGTTCCCCTAACAGCACCTGTATTAAAGTTGGGTTAAGTAAACTTTCGAGAATCCGAACTTAGAACACCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29776</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>349880</contig_pos>
        <strand></strand>
        <context>TGAGAATTTC[A/G]ATTTCATCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGGATTTTTTCCAAAAGTTTTCCTATTAACAACCGATTTTGAGAATTTC</left_flank>
        <right_flank>ATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCTTCTATTACGGGGGCCCTTCTAATACAGGTTTTACAGTGATTAAACTCAAACTTGCCAGCGCGTGGAGTCTTTTCAAGAAGCCTACAATAAACGTGAACTTTGAGCTCAATTATCTCGATTCCTTCAAAAAATACTGAAAATGTGTTAACTGACAAAACGTTTCTGACGTTATGGTAAACCAGCCTGCTGGCTTCTGCGCCTTTGGCGCAATTCAATATTTTTTACTGGTTGTTCACTCCACCCCTCTATTCGATTTCTCTCAGTTGTTGTGCGACAGGCCGCTGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTAAAAACCCAAAACCAGACAGACTGACACCGGGACCAACAGACGCGTCTAGCGTTCTATATATAAGGAAGATAATTCATCAGTTGACACATTTAAAAGATCTCTTGCAAAAATCGAGATAATTGAGCTCGATGGATTTTTTCCAAAAGTTTTCCTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAAAAGAATAACATTTTTTAAAAAGTTTATTATTCAAAAAAGGTTTGCTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAATAACGT</canonical>
            <polymorphic>CCCTTCTATTACGGGGGCCCTTCTAATACAGGTTTTACAGTGATTAAACTCAAACTTGCCAGCGCGTGGAGTCTTTTCAAGAAGCCTACAATAAACGTGAACTTTGAGCTCAATTATCTCGATTCCTTCAAAAAATACTGAAAATGTGTTAACTGACAAAACGTTTCTGACGTTATGGTAAACCAGCCTGCTGGCTTCTGCGCCTTTGGCGCAATTCAATATTTTTTACTGGTTGTTCACTCCACCCCTCTATTCGATTTCTCTCAGTTGTTGTGCGACAGGCCGCTGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTAAAAACCCAAAACCAGACAGACTGACACCGGGACCAACAGACGCGTCTAGCGTTCTATATATAAGGAAGATAATTCATCAGTTGACACATTTAAAAGATCTCTTGCAAAAATCGAGATAATTGAGCTCGATGGATTTTTTCCAAAAGTTTTCCTATTAACAACCGATTTTGAGAATTTCRATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAAAAGAATAACATTTTTTAAAAAGTTTATTATTCAAAAAAGGTTTGCTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAATAACGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>375 179 126 111 101 55 47 6</canonical_bands>
                <polymorphic_bands>375 179 132 111 101 55 47</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTCATTTAAAAACCCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>ACGGTAGGTTGTCGAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>CTTTCATTTAAAAACCCAAAACCAGACAGACTGACACCGGGACCAACAGACGCGTCTAGCGTTCTATATATAAGGAAGATAATTCATCAGTTGACACATTTAAAAGATCTCTTGCAAAAATCGAGATAATTGAGCTCGATGGATTTTTTCCAAAAGTTTTCCTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGT</canonical_amplicon>
		<polymorphic_amplicon>CTTTCATTTAAAAACCCAAAACCAGACAGACTGACACCGGGACCAACAGACGCGTCTAGCGTTCTATATATAAGGAAGATAATTCATCAGTTGACACATTTAAAAGATCTCTTGCAAAAATCGAGATAATTGAGCTCGATGGATTTTTTCCAAAAGTTTTCCTATTAACAACCGATTTTGAGAATTTCRATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29777</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>349899</contig_pos>
        <strand></strand>
        <context>TTGTCAAAAA[C/T]GCATATAGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCCTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAA</left_flank>
        <right_flank>GCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCTAATACAGGTTTTACAGTGATTAAACTCAAACTTGCCAGCGCGTGGAGTCTTTTCAAGAAGCCTACAATAAACGTGAACTTTGAGCTCAATTATCTCGATTCCTTCAAAAAATACTGAAAATGTGTTAACTGACAAAACGTTTCTGACGTTATGGTAAACCAGCCTGCTGGCTTCTGCGCCTTTGGCGCAATTCAATATTTTTTACTGGTTGTTCACTCCACCCCTCTATTCGATTTCTCTCAGTTGTTGTGCGACAGGCCGCTGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTAAAAACCCAAAACCAGACAGACTGACACCGGGACCAACAGACGCGTCTAGCGTTCTATATATAAGGAAGATAATTCATCAGTTGACACATTTAAAAGATCTCTTGCAAAAATCGAGATAATTGAGCTCGATGGATTTTTTCCAAAAGTTTTCCTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAAAAGAATAACATTTTTTAAAAAGTTTATTATTCAAAAAAGGTTTGCTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAA</canonical>
            <polymorphic>CTTCTAATACAGGTTTTACAGTGATTAAACTCAAACTTGCCAGCGCGTGGAGTCTTTTCAAGAAGCCTACAATAAACGTGAACTTTGAGCTCAATTATCTCGATTCCTTCAAAAAATACTGAAAATGTGTTAACTGACAAAACGTTTCTGACGTTATGGTAAACCAGCCTGCTGGCTTCTGCGCCTTTGGCGCAATTCAATATTTTTTACTGGTTGTTCACTCCACCCCTCTATTCGATTTCTCTCAGTTGTTGTGCGACAGGCCGCTGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTAAAAACCCAAAACCAGACAGACTGACACCGGGACCAACAGACGCGTCTAGCGTTCTATATATAAGGAAGATAATTCATCAGTTGACACATTTAAAAGATCTCTTGCAAAAATCGAGATAATTGAGCTCGATGGATTTTTTCCAAAAGTTTTCCTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAAYGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAAAAGAATAACATTTTTTAAAAAGTTTATTATTCAAAAAAGGTTTGCTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCCTATTAACAACCGATTT</pcr_primer_p1>
		<pcr_primer_p2>GTGTTGTTCAGCTCACTATGTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCCTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACAC</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCCTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAAYGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29778</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>349916</contig_pos>
        <strand></strand>
        <context>AGCTTCAATA[C/T]TAATCAACCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATA</left_flank>
        <right_flank>TAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAAC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGTGATTAAACTCAAACTTGCCAGCGCGTGGAGTCTTTTCAAGAAGCCTACAATAAACGTGAACTTTGAGCTCAATTATCTCGATTCCTTCAAAAAATACTGAAAATGTGTTAACTGACAAAACGTTTCTGACGTTATGGTAAACCAGCCTGCTGGCTTCTGCGCCTTTGGCGCAATTCAATATTTTTTACTGGTTGTTCACTCCACCCCTCTATTCGATTTCTCTCAGTTGTTGTGCGACAGGCCGCTGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTAAAAACCCAAAACCAGACAGACTGACACCGGGACCAACAGACGCGTCTAGCGTTCTATATATAAGGAAGATAATTCATCAGTTGACACATTTAAAAGATCTCTTGCAAAAATCGAGATAATTGAGCTCGATGGATTTTTTCCAAAAGTTTTCCTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAAAAGAATAACATTTTTTAAAAAGTTTATTATTCAAAAAAGGTTTGCTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGACGTTGTT</canonical>
            <polymorphic>ACAGTGATTAAACTCAAACTTGCCAGCGCGTGGAGTCTTTTCAAGAAGCCTACAATAAACGTGAACTTTGAGCTCAATTATCTCGATTCCTTCAAAAAATACTGAAAATGTGTTAACTGACAAAACGTTTCTGACGTTATGGTAAACCAGCCTGCTGGCTTCTGCGCCTTTGGCGCAATTCAATATTTTTTACTGGTTGTTCACTCCACCCCTCTATTCGATTTCTCTCAGTTGTTGTGCGACAGGCCGCTGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTAAAAACCCAAAACCAGACAGACTGACACCGGGACCAACAGACGCGTCTAGCGTTCTATATATAAGGAAGATAATTCATCAGTTGACACATTTAAAAGATCTCTTGCAAAAATCGAGATAATTGAGCTCGATGGATTTTTTCCAAAAGTTTTCCTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATAYTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAAAAGAATAACATTTTTTAAAAAGTTTATTATTCAAAAAAGGTTTGCTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGACGTTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTAACAACCGATTTTGAGAA</pcr_primer_p1>
		<pcr_primer_p2>TAAATGTGTTGTTCAGCTCACTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTA</canonical_amplicon>
		<polymorphic_amplicon>CTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATAYTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29779</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>349928</contig_pos>
        <strand></strand>
        <context>AATCAACCTA[C/G]AGTAACGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTA</left_flank>
        <right_flank>AGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCAAACTTGCCAGCGCGTGGAGTCTTTTCAAGAAGCCTACAATAAACGTGAACTTTGAGCTCAATTATCTCGATTCCTTCAAAAAATACTGAAAATGTGTTAACTGACAAAACGTTTCTGACGTTATGGTAAACCAGCCTGCTGGCTTCTGCGCCTTTGGCGCAATTCAATATTTTTTACTGGTTGTTCACTCCACCCCTCTATTCGATTTCTCTCAGTTGTTGTGCGACAGGCCGCTGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTAAAAACCCAAAACCAGACAGACTGACACCGGGACCAACAGACGCGTCTAGCGTTCTATATATAAGGAAGATAATTCATCAGTTGACACATTTAAAAGATCTCTTGCAAAAATCGAGATAATTGAGCTCGATGGATTTTTTCCAAAAGTTTTCCTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAAAAGAATAACATTTTTTAAAAAGTTTATTATTCAAAAAAGGTTTGCTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGACGTTGTTCCGGTTTCGAGA</canonical>
            <polymorphic>CTCAAACTTGCCAGCGCGTGGAGTCTTTTCAAGAAGCCTACAATAAACGTGAACTTTGAGCTCAATTATCTCGATTCCTTCAAAAAATACTGAAAATGTGTTAACTGACAAAACGTTTCTGACGTTATGGTAAACCAGCCTGCTGGCTTCTGCGCCTTTGGCGCAATTCAATATTTTTTACTGGTTGTTCACTCCACCCCTCTATTCGATTTCTCTCAGTTGTTGTGCGACAGGCCGCTGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTAAAAACCCAAAACCAGACAGACTGACACCGGGACCAACAGACGCGTCTAGCGTTCTATATATAAGGAAGATAATTCATCAGTTGACACATTTAAAAGATCTCTTGCAAAAATCGAGATAATTGAGCTCGATGGATTTTTTCCAAAAGTTTTCCTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTASAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAAAAGAATAACATTTTTTAAAAAGTTTATTATTCAAAAAAGGTTTGCTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGACGTTGTTCCGGTTTCGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 468 31</canonical_bands>
                <polymorphic_bands>532 468</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTAACAACCGATTTTGAGAA</pcr_primer_p1>
		<pcr_primer_p2>TAAATGTGTTGTTCAGCTCACTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTA</canonical_amplicon>
		<polymorphic_amplicon>CTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTASAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29780</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>349941</contig_pos>
        <strand></strand>
        <context>TAACGTTTTC[G/A]AACTTTTCGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTC</left_flank>
        <right_flank>AACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGCGTGGAGTCTTTTCAAGAAGCCTACAATAAACGTGAACTTTGAGCTCAATTATCTCGATTCCTTCAAAAAATACTGAAAATGTGTTAACTGACAAAACGTTTCTGACGTTATGGTAAACCAGCCTGCTGGCTTCTGCGCCTTTGGCGCAATTCAATATTTTTTACTGGTTGTTCACTCCACCCCTCTATTCGATTTCTCTCAGTTGTTGTGCGACAGGCCGCTGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTAAAAACCCAAAACCAGACAGACTGACACCGGGACCAACAGACGCGTCTAGCGTTCTATATATAAGGAAGATAATTCATCAGTTGACACATTTAAAAGATCTCTTGCAAAAATCGAGATAATTGAGCTCGATGGATTTTTTCCAAAAGTTTTCCTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAAAAGAATAACATTTTTTAAAAAGTTTATTATTCAAAAAAGGTTTGCTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGACGTTGTTCCGGTTTCGAGAGACGTTTACTGAA</canonical>
            <polymorphic>GCGCGTGGAGTCTTTTCAAGAAGCCTACAATAAACGTGAACTTTGAGCTCAATTATCTCGATTCCTTCAAAAAATACTGAAAATGTGTTAACTGACAAAACGTTTCTGACGTTATGGTAAACCAGCCTGCTGGCTTCTGCGCCTTTGGCGCAATTCAATATTTTTTACTGGTTGTTCACTCCACCCCTCTATTCGATTTCTCTCAGTTGTTGTGCGACAGGCCGCTGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTAAAAACCCAAAACCAGACAGACTGACACCGGGACCAACAGACGCGTCTAGCGTTCTATATATAAGGAAGATAATTCATCAGTTGACACATTTAAAAGATCTCTTGCAAAAATCGAGATAATTGAGCTCGATGGATTTTTTCCAAAAGTTTTCCTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCRAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAAAAGAATAACATTTTTTAAAAAGTTTATTATTCAAAAAAGGTTTGCTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGACGTTGTTCCGGTTTCGAGAGACGTTTACTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>257 178 135 112 101 65 59 52 17 15 9</canonical_bands>
                <polymorphic_bands>257 178 135 121 101 65 59 52 17 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTAACAACCGATTTTGAGAA</pcr_primer_p1>
		<pcr_primer_p2>TAAATGTGTTGTTCAGCTCACTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTA</canonical_amplicon>
		<polymorphic_amplicon>CTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCRAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29781</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>349981</contig_pos>
        <strand></strand>
        <context>TAATGGTAGC[C/T]CTCCCATACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGC</left_flank>
        <right_flank>CTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTGAGCTCAATTATCTCGATTCCTTCAAAAAATACTGAAAATGTGTTAACTGACAAAACGTTTCTGACGTTATGGTAAACCAGCCTGCTGGCTTCTGCGCCTTTGGCGCAATTCAATATTTTTTACTGGTTGTTCACTCCACCCCTCTATTCGATTTCTCTCAGTTGTTGTGCGACAGGCCGCTGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTAAAAACCCAAAACCAGACAGACTGACACCGGGACCAACAGACGCGTCTAGCGTTCTATATATAAGGAAGATAATTCATCAGTTGACACATTTAAAAGATCTCTTGCAAAAATCGAGATAATTGAGCTCGATGGATTTTTTCCAAAAGTTTTCCTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAAAAGAATAACATTTTTTAAAAAGTTTATTATTCAAAAAAGGTTTGCTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGACGTTGTTCCGGTTTCGAGAGACGTTTACTGAAAATATAAGAAATTAAAAAAAGGAAAATCTATTAAAAAAAA</canonical>
            <polymorphic>CTTTGAGCTCAATTATCTCGATTCCTTCAAAAAATACTGAAAATGTGTTAACTGACAAAACGTTTCTGACGTTATGGTAAACCAGCCTGCTGGCTTCTGCGCCTTTGGCGCAATTCAATATTTTTTACTGGTTGTTCACTCCACCCCTCTATTCGATTTCTCTCAGTTGTTGTGCGACAGGCCGCTGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTAAAAACCCAAAACCAGACAGACTGACACCGGGACCAACAGACGCGTCTAGCGTTCTATATATAAGGAAGATAATTCATCAGTTGACACATTTAAAAGATCTCTTGCAAAAATCGAGATAATTGAGCTCGATGGATTTTTTCCAAAAGTTTTCCTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCYCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAAAAGAATAACATTTTTTAAAAAGTTTATTATTCAAAAAAGGTTTGCTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGACGTTGTTCCGGTTTCGAGAGACGTTTACTGAAAATATAAGAAATTAAAAAAAGGAAAATCTATTAAAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>395 139 88 84 82 78 72 24 23 8 7</canonical_bands>
                <polymorphic_bands>395 139 95 88 84 82 78 24 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTAACAACCGATTTTGAGAA</pcr_primer_p1>
		<pcr_primer_p2>TAAATGTGTTGTTCAGCTCACTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTA</canonical_amplicon>
		<polymorphic_amplicon>CTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCYCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29782</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>350037</contig_pos>
        <strand></strand>
        <context>ACACGATATT[A/G]AACCTACTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATT</left_flank>
        <right_flank>AACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACGTTTCTGACGTTATGGTAAACCAGCCTGCTGGCTTCTGCGCCTTTGGCGCAATTCAATATTTTTTACTGGTTGTTCACTCCACCCCTCTATTCGATTTCTCTCAGTTGTTGTGCGACAGGCCGCTGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTAAAAACCCAAAACCAGACAGACTGACACCGGGACCAACAGACGCGTCTAGCGTTCTATATATAAGGAAGATAATTCATCAGTTGACACATTTAAAAGATCTCTTGCAAAAATCGAGATAATTGAGCTCGATGGATTTTTTCCAAAAGTTTTCCTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAAAAGAATAACATTTTTTAAAAAGTTTATTATTCAAAAAAGGTTTGCTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGACGTTGTTCCGGTTTCGAGAGACGTTTACTGAAAATATAAGAAATTAAAAAAAGGAAAATCTATTAAAAAAAAAAATATAACTGACCTTTGTCTAGCCGTTTTCCTTCGAAGCACCCAGTTCACAGTTT</canonical>
            <polymorphic>AAAACGTTTCTGACGTTATGGTAAACCAGCCTGCTGGCTTCTGCGCCTTTGGCGCAATTCAATATTTTTTACTGGTTGTTCACTCCACCCCTCTATTCGATTTCTCTCAGTTGTTGTGCGACAGGCCGCTGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTAAAAACCCAAAACCAGACAGACTGACACCGGGACCAACAGACGCGTCTAGCGTTCTATATATAAGGAAGATAATTCATCAGTTGACACATTTAAAAGATCTCTTGCAAAAATCGAGATAATTGAGCTCGATGGATTTTTTCCAAAAGTTTTCCTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTRAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAAAAGAATAACATTTTTTAAAAAGTTTATTATTCAAAAAAGGTTTGCTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGACGTTGTTCCGGTTTCGAGAGACGTTTACTGAAAATATAAGAAATTAAAAAAAGGAAAATCTATTAAAAAAAAAAATATAACTGACCTTTGTCTAGCCGTTTTCCTTCGAAGCACCCAGTTCACAGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>179 162 158 92 82 78 65 65 53 25 22 19</canonical_bands>
                <polymorphic_bands>201 162 158 92 82 78 65 65 53 25 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTAACAACCGATTTTGAGAA</pcr_primer_p1>
		<pcr_primer_p2>TAAATGTGTTGTTCAGCTCACTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTA</canonical_amplicon>
		<polymorphic_amplicon>CTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTRAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29783</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>350066</contig_pos>
        <strand></strand>
        <context>TTTAAAACAA[A/G]ACTRCTCATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAA</left_flank>
        <right_flank>ACTGCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGCTGGCTTCTGCGCCTTTGGCGCAATTCAATATTTTTTACTGGTTGTTCACTCCACCCCTCTATTCGATTTCTCTCAGTTGTTGTGCGACAGGCCGCTGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTAAAAACCCAAAACCAGACAGACTGACACCGGGACCAACAGACGCGTCTAGCGTTCTATATATAAGGAAGATAATTCATCAGTTGACACATTTAAAAGATCTCTTGCAAAAATCGAGATAATTGAGCTCGATGGATTTTTTCCAAAAGTTTTCCTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAAAAGAATAACATTTTTTAAAAAGTTTATTATTCAAAAAAGGTTTGCTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGACGTTGTTCCGGTTTCGAGAGACGTTTACTGAAAATATAAGAAATTAAAAAAAGGAAAATCTATTAAAAAAAAAAATATAACTGACCTTTGTCTAGCCGTTTTCCTTCGAAGCACCCAGTTCACAGTTTCCATTCTTTCCTTTTTCTGGCTTCGAGAT</canonical>
            <polymorphic>CCTGCTGGCTTCTGCGCCTTTGGCGCAATTCAATATTTTTTACTGGTTGTTCACTCCACCCCTCTATTCGATTTCTCTCAGTTGTTGTGCGACAGGCCGCTGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTAAAAACCCAAAACCAGACAGACTGACACCGGGACCAACAGACGCGTCTAGCGTTCTATATATAAGGAAGATAATTCATCAGTTGACACATTTAAAAGATCTCTTGCAAAAATCGAGATAATTGAGCTCGATGGATTTTTTCCAAAAGTTTTCCTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAARACTGCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAAAAGAATAACATTTTTTAAAAAGTTTATTATTCAAAAAAGGTTTGCTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGACGTTGTTCCGGTTTCGAGAGACGTTTACTGAAAATATAAGAAATTAAAAAAAGGAAAATCTATTAAAAAAAAAAATATAACTGACCTTTGTCTAGCCGTTTTCCTTCGAAGCACCCAGTTCACAGTTTCCATTCTTTCCTTTTTCTGGCTTCGAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGCTCAATTATCTCGATTACTA</pcr_primer_p1>
		<pcr_primer_p2>AGATGCAGACCGAGAATAAATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAAAAGAATAACATTTTTTAAAAAGTTTATTATTCAAAAAAGGTTTGCTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCT</canonical_amplicon>
		<polymorphic_amplicon>TGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAARACTGCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAAAAGAATAACATTTTTTAAAAAGTTTATTATTCAAAAAAGGTTTGCTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29784</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>350070</contig_pos>
        <strand></strand>
        <context>AAACAARACT[G/A]CTCATGACAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACT</left_flank>
        <right_flank>CTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGCTTCTGCGCCTTTGGCGCAATTCAATATTTTTTACTGGTTGTTCACTCCACCCCTCTATTCGATTTCTCTCAGTTGTTGTGCGACAGGCCGCTGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTAAAAACCCAAAACCAGACAGACTGACACCGGGACCAACAGACGCGTCTAGCGTTCTATATATAAGGAAGATAATTCATCAGTTGACACATTTAAAAGATCTCTTGCAAAAATCGAGATAATTGAGCTCGATGGATTTTTTCCAAAAGTTTTCCTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAAAAGAATAACATTTTTTAAAAAGTTTATTATTCAAAAAAGGTTTGCTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGACGTTGTTCCGGTTTCGAGAGACGTTTACTGAAAATATAAGAAATTAAAAAAAGGAAAATCTATTAAAAAAAAAAATATAACTGACCTTTGTCTAGCCGTTTTCCTTCGAAGCACCCAGTTCACAGTTTCCATTCTTTCCTTTTTCTGGCTTCGAGATGTGC</canonical>
            <polymorphic>CTGGCTTCTGCGCCTTTGGCGCAATTCAATATTTTTTACTGGTTGTTCACTCCACCCCTCTATTCGATTTCTCTCAGTTGTTGTGCGACAGGCCGCTGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTAAAAACCCAAAACCAGACAGACTGACACCGGGACCAACAGACGCGTCTAGCGTTCTATATATAAGGAAGATAATTCATCAGTTGACACATTTAAAAGATCTCTTGCAAAAATCGAGATAATTGAGCTCGATGGATTTTTTCCAAAAGTTTTCCTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTRCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAAAAGAATAACATTTTTTAAAAAGTTTATTATTCAAAAAAGGTTTGCTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGACGTTGTTCCGGTTTCGAGAGACGTTTACTGAAAATATAAGAAATTAAAAAAAGGAAAATCTATTAAAAAAAAAAATATAACTGACCTTTGTCTAGCCGTTTTCCTTCGAAGCACCCAGTTCACAGTTTCCATTCTTTCCTTTTTCTGGCTTCGAGATGTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGCTCAATTATCTCGATTACTA</pcr_primer_p1>
		<pcr_primer_p2>AGATGCAGACCGAGAATAAATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAAAAGAATAACATTTTTTAAAAAGTTTATTATTCAAAAAAGGTTTGCTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCT</canonical_amplicon>
		<polymorphic_amplicon>TGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTRCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAAAAGAATAACATTTTTTAAAAAGTTTATTATTCAAAAAAGGTTTGCTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29785</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>350298</contig_pos>
        <strand></strand>
        <context>ACTGCTTAAA[A/C]TCCGAGCGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAA</left_flank>
        <right_flank>TCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCTTGCAAAAATCGAGATAATTGAGCTCGATGGATTTTTTCCAAAAGTTTTCCTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAAAAGAATAACATTTTTTAAAAAGTTTATTATTCAAAAAAGGTTTGCTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGACGTTGTTCCGGTTTCGAGAGACGTTTACTGAAAATATAAGAAATTAAAAAAAGGAAAATCTATTAAAAAAAAAAATATAACTGACCTTTGTCTAGCCGTTTTCCTTCGAAGCACCCAGTTCACAGTTTCCATTCTTTCCTTTTTCTGGCTTCGAGATGTGCTACAGGAGCTTCAGATGGAGTACCGAAGCTTCAGTTGAAGATCGCACTGGACCGGATTGTTGTCGTCTACTCGGAGCAATCTTTCTGGTTCCTGACTTTATTTGCTTTGGAGCTACTGGAGACTTCTGTACTGTTGAATACGTTGGCAGATTCCAAGCTTCATCACAAGCTTGTTCGTCAATTCTTAGATCTGGTTCTTCACTGGAATCCCGTTCTTCGTAGCGCTTG</canonical>
            <polymorphic>TCTCTTGCAAAAATCGAGATAATTGAGCTCGATGGATTTTTTCCAAAAGTTTTCCTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAAAAGAATAACATTTTTTAAAAAGTTTATTATTCAAAAAAGGTTTGCTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAMTCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGACGTTGTTCCGGTTTCGAGAGACGTTTACTGAAAATATAAGAAATTAAAAAAAGGAAAATCTATTAAAAAAAAAAATATAACTGACCTTTGTCTAGCCGTTTTCCTTCGAAGCACCCAGTTCACAGTTTCCATTCTTTCCTTTTTCTGGCTTCGAGATGTGCTACAGGAGCTTCAGATGGAGTACCGAAGCTTCAGTTGAAGATCGCACTGGACCGGATTGTTGTCGTCTACTCGGAGCAATCTTTCTGGTTCCTGACTTTATTTGCTTTGGAGCTACTGGAGACTTCTGTACTGTTGAATACGTTGGCAGATTCCAAGCTTCATCACAAGCTTGTTCGTCAATTCTTAGATCTGGTTCTTCACTGGAATCCCGTTCTTCGTAGCGCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGAATGAGAAAATGACAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTCAGACAAAGTTCACTGAGGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGAC</canonical_amplicon>
		<polymorphic_amplicon>CTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAMTCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29786</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>350348</contig_pos>
        <strand></strand>
        <context>CAGGGCGGTT[C/T]YTCAGCGACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTT</left_flank>
        <right_flank>TTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAAAAGAATAACATTTTTTAAAAAGTTTATTATTCAAAAAAGGTTTGCTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGACGTTGTTCCGGTTTCGAGAGACGTTTACTGAAAATATAAGAAATTAAAAAAAGGAAAATCTATTAAAAAAAAAAATATAACTGACCTTTGTCTAGCCGTTTTCCTTCGAAGCACCCAGTTCACAGTTTCCATTCTTTCCTTTTTCTGGCTTCGAGATGTGCTACAGGAGCTTCAGATGGAGTACCGAAGCTTCAGTTGAAGATCGCACTGGACCGGATTGTTGTCGTCTACTCGGAGCAATCTTTCTGGTTCCTGACTTTATTTGCTTTGGAGCTACTGGAGACTTCTGTACTGTTGAATACGTTGGCAGATTCCAAGCTTCATCACAAGCTTGTTCGTCAATTCTTAGATCTGGTTCTTCACTGGAATCCCGTTCTTCGTAGCGCTTGGGCACTCTCAGAATCGCCAAAAAATTCGCGAAAACCTTCTCTCGAGAAAT</canonical>
            <polymorphic>TTTCCTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAAAAGAATAACATTTTTTAAAAAGTTTATTATTCAAAAAAGGTTTGCTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTYTTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGACGTTGTTCCGGTTTCGAGAGACGTTTACTGAAAATATAAGAAATTAAAAAAAGGAAAATCTATTAAAAAAAAAAATATAACTGACCTTTGTCTAGCCGTTTTCCTTCGAAGCACCCAGTTCACAGTTTCCATTCTTTCCTTTTTCTGGCTTCGAGATGTGCTACAGGAGCTTCAGATGGAGTACCGAAGCTTCAGTTGAAGATCGCACTGGACCGGATTGTTGTCGTCTACTCGGAGCAATCTTTCTGGTTCCTGACTTTATTTGCTTTGGAGCTACTGGAGACTTCTGTACTGTTGAATACGTTGGCAGATTCCAAGCTTCATCACAAGCTTGTTCGTCAATTCTTAGATCTGGTTCTTCACTGGAATCCCGTTCTTCGTAGCGCTTGGGCACTCTCAGAATCGCCAAAAAATTCGCGAAAACCTTCTCTCGAGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGAATGAGAAAATGACAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTCAGACAAAGTTCACTGAGGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGAC</canonical_amplicon>
		<polymorphic_amplicon>CTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTYTTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29787</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>350349</contig_pos>
        <strand></strand>
        <context>AGGGCGGTTY[T/C]TCAGCGACTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTC</left_flank>
        <right_flank>TCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAAAAGAATAACATTTTTTAAAAAGTTTATTATTCAAAAAAGGTTTGCTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGACGTTGTTCCGGTTTCGAGAGACGTTTACTGAAAATATAAGAAATTAAAAAAAGGAAAATCTATTAAAAAAAAAAATATAACTGACCTTTGTCTAGCCGTTTTCCTTCGAAGCACCCAGTTCACAGTTTCCATTCTTTCCTTTTTCTGGCTTCGAGATGTGCTACAGGAGCTTCAGATGGAGTACCGAAGCTTCAGTTGAAGATCGCACTGGACCGGATTGTTGTCGTCTACTCGGAGCAATCTTTCTGGTTCCTGACTTTATTTGCTTTGGAGCTACTGGAGACTTCTGTACTGTTGAATACGTTGGCAGATTCCAAGCTTCATCACAAGCTTGTTCGTCAATTCTTAGATCTGGTTCTTCACTGGAATCCCGTTCTTCGTAGCGCTTGGGCACTCTCAGAATCGCCAAAAAATTCGCGAAAACCTTCTCTCGAGAAATT</canonical>
            <polymorphic>TTCCTATTAACAACCGATTTTGAGAATTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAAAAGAATAACATTTTTTAAAAAGTTTATTATTCAAAAAAGGTTTGCTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCYTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGACGTTGTTCCGGTTTCGAGAGACGTTTACTGAAAATATAAGAAATTAAAAAAAGGAAAATCTATTAAAAAAAAAAATATAACTGACCTTTGTCTAGCCGTTTTCCTTCGAAGCACCCAGTTCACAGTTTCCATTCTTTCCTTTTTCTGGCTTCGAGATGTGCTACAGGAGCTTCAGATGGAGTACCGAAGCTTCAGTTGAAGATCGCACTGGACCGGATTGTTGTCGTCTACTCGGAGCAATCTTTCTGGTTCCTGACTTTATTTGCTTTGGAGCTACTGGAGACTTCTGTACTGTTGAATACGTTGGCAGATTCCAAGCTTCATCACAAGCTTGTTCGTCAATTCTTAGATCTGGTTCTTCACTGGAATCCCGTTCTTCGTAGCGCTTGGGCACTCTCAGAATCGCCAAAAAATTCGCGAAAACCTTCTCTCGAGAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGAATGAGAAAATGACAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTCAGACAAAGTTCACTGAGGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGAC</canonical_amplicon>
		<polymorphic_amplicon>CTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCYTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29788</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>350375</contig_pos>
        <strand></strand>
        <context>ATTTCGTTAA[T/G]AACGTGCTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAA</left_flank>
        <right_flank>AACGTGCTTTTGAACCTCAGTGAACTTTGTCTGACGTTGTTCCGGTTTCG</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAAAAGAATAACATTTTTTAAAAAGTTTATTATTCAAAAAAGGTTTGCTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGACGTTGTTCCGGTTTCGAGAGACGTTTACTGAAAATATAAGAAATTAAAAAAAGGAAAATCTATTAAAAAAAAAAATATAACTGACCTTTGTCTAGCCGTTTTCCTTCGAAGCACCCAGTTCACAGTTTCCATTCTTTCCTTTTTCTGGCTTCGAGATGTGCTACAGGAGCTTCAGATGGAGTACCGAAGCTTCAGTTGAAGATCGCACTGGACCGGATTGTTGTCGTCTACTCGGAGCAATCTTTCTGGTTCCTGACTTTATTTGCTTTGGAGCTACTGGAGACTTCTGTACTGTTGAATACGTTGGCAGATTCCAAGCTTCATCACAAGCTTGTTCGTCAATTCTTAGATCTGGTTCTTCACTGGAATCCCGTTCTTCGTAGCGCTTGGGCACTCTCAGAATCGCCAAAAAATTCGCGAAAACCTTCTCTCGAGAAATTGAGTCGCAGAGAGACTTTGTGTCCAA</canonical>
            <polymorphic>TTTCAATTTCATCTTGTCAAAAACGCATATAGCTTCAATACTAATCAACCTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAAAAGAATAACATTTTTTAAAAAGTTTATTATTCAAAAAAGGTTTGCTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAAKAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGACGTTGTTCCGGTTTCGAGAGACGTTTACTGAAAATATAAGAAATTAAAAAAAGGAAAATCTATTAAAAAAAAAAATATAACTGACCTTTGTCTAGCCGTTTTCCTTCGAAGCACCCAGTTCACAGTTTCCATTCTTTCCTTTTTCTGGCTTCGAGATGTGCTACAGGAGCTTCAGATGGAGTACCGAAGCTTCAGTTGAAGATCGCACTGGACCGGATTGTTGTCGTCTACTCGGAGCAATCTTTCTGGTTCCTGACTTTATTTGCTTTGGAGCTACTGGAGACTTCTGTACTGTTGAATACGTTGGCAGATTCCAAGCTTCATCACAAGCTTGTTCGTCAATTCTTAGATCTGGTTCTTCACTGGAATCCCGTTCTTCGTAGCGCTTGGGCACTCTCAGAATCGCCAAAAAATTCGCGAAAACCTTCTCTCGAGAAATTGAGTCGCAGAGAGACTTTGTGTCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGTTCTCAGAAATCATGTGTA</pcr_primer_p1>
		<pcr_primer_p2>AGAAAAAGGAAAGAATGGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGACGTTGTTCCGGTTTCGAGAGACGTTTACTGAAAATATAAGAAATTAAAAAAAGGAAAATCTATTAAAAAAAAAAATATAACTGACCTTTGTCTAGCCGTTTTCCTTCGAAGCACCCAGTTCACAGTTTCCATTCTTTCCTTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>CAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAAKAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGACGTTGTTCCGGTTTCGAGAGACGTTTACTGAAAATATAAGAAATTAAAAAAAGGAAAATCTATTAAAAAAAAAAATATAACTGACCTTTGTCTAGCCGTTTTCCTTCGAAGCACCCAGTTCACAGTTTCCATTCTTTCCTTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29789</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>350424</contig_pos>
        <strand></strand>
        <context>GTTCCGGTTT[C/T]GAGAGACGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGACGTTGTTCCGGTTT</left_flank>
        <right_flank>GAGAGACGTTTACTGAAAATATAAGAAATTAAAAAAAGGAAAATCTATTA</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAAAAGAATAACATTTTTTAAAAAGTTTATTATTCAAAAAAGGTTTGCTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGACGTTGTTCCGGTTTCGAGAGACGTTTACTGAAAATATAAGAAATTAAAAAAAGGAAAATCTATTAAAAAAAAAAATATAACTGACCTTTGTCTAGCCGTTTTCCTTCGAAGCACCCAGTTCACAGTTTCCATTCTTTCCTTTTTCTGGCTTCGAGATGTGCTACAGGAGCTTCAGATGGAGTACCGAAGCTTCAGTTGAAGATCGCACTGGACCGGATTGTTGTCGTCTACTCGGAGCAATCTTTCTGGTTCCTGACTTTATTTGCTTTGGAGCTACTGGAGACTTCTGTACTGTTGAATACGTTGGCAGATTCCAAGCTTCATCACAAGCTTGTTCGTCAATTCTTAGATCTGGTTCTTCACTGGAATCCCGTTCTTCGTAGCGCTTGGGCACTCTCAGAATCGCCAAAAAATTCGCGAAAACCTTCTCTCGAGAAATTGAGTCGCAGAGAGACTTTGTGTCCAACACGACGTTGTCTTCAAGGGGGCAATCAGAAAACTTGTATGACGATGCA</canonical>
            <polymorphic>CTACAGTAACGTTTTCGAACTTTTCGACAACCTACCGTAAACGCTCTAATGGTAGCCCTCCCATACATGCACTTTGAGCTCAATTATCTCGATTACTAAAGCACACGATATTAAACCTACTTGAAACTTGTTTTAAAACAAAACTGCTCATGACATAGTGAGCTGAACAACACATTTAGAATGTTTTAATCGAAAAAAGAATAACATTTTTTAAAAAGTTTATTATTCAAAAAAGGTTTGCTCGAATGAGAAAATGACAAATGACAAATGACATGAGAAAAAGCAACAATCATGAAATAATCTTATTTATTCTCGGTCTGCATCTGTCTTCCTCGTTGGCGATTGTTTACGAAATAGTTCAAAACTGCTTAAAATCCGAGCGCAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGACGTTGTTCCGGTTTYGAGAGACGTTTACTGAAAATATAAGAAATTAAAAAAAGGAAAATCTATTAAAAAAAAAAATATAACTGACCTTTGTCTAGCCGTTTTCCTTCGAAGCACCCAGTTCACAGTTTCCATTCTTTCCTTTTTCTGGCTTCGAGATGTGCTACAGGAGCTTCAGATGGAGTACCGAAGCTTCAGTTGAAGATCGCACTGGACCGGATTGTTGTCGTCTACTCGGAGCAATCTTTCTGGTTCCTGACTTTATTTGCTTTGGAGCTACTGGAGACTTCTGTACTGTTGAATACGTTGGCAGATTCCAAGCTTCATCACAAGCTTGTTCGTCAATTCTTAGATCTGGTTCTTCACTGGAATCCCGTTCTTCGTAGCGCTTGGGCACTCTCAGAATCGCCAAAAAATTCGCGAAAACCTTCTCTCGAGAAATTGAGTCGCAGAGAGACTTTGTGTCCAACACGACGTTGTCTTCAAGGGGGCAATCAGAAAACTTGTATGACGATGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>280 257 101 92 83 65 52 45 16 9</canonical_bands>
                <polymorphic_bands>349 280 101 83 65 52 45 16 9</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>209 164 142 137 100 88 85 61 14</canonical_bands>
                <polymorphic_bands>346 164 142 100 88 85 61 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGTTCTCAGAAATCATGTGTA</pcr_primer_p1>
		<pcr_primer_p2>AGAAAAAGGAAAGAATGGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGACGTTGTTCCGGTTTCGAGAGACGTTTACTGAAAATATAAGAAATTAAAAAAAGGAAAATCTATTAAAAAAAAAAATATAACTGACCTTTGTCTAGCCGTTTTCCTTCGAAGCACCCAGTTCACAGTTTCCATTCTTTCCTTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>CAAGTTCTCAGAAATCATGTGTATCGTTTTACAGGGCGGTTCTTCAGCGACTTTGAAGATTTCGTTAATAACGTGCTTTTGAACCTCAGTGAACTTTGTCTGACGTTGTTCCGGTTTYGAGAGACGTTTACTGAAAATATAAGAAATTAAAAAAAGGAAAATCTATTAAAAAAAAAAATATAACTGACCTTTGTCTAGCCGTTTTCCTTCGAAGCACCCAGTTCACAGTTTCCATTCTTTCCTTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29796</snp_id>
        <super_contig>c004801857.Contig1</super_contig>
        <contig_pos>364732</contig_pos>
        <strand></strand>
        <context>GTTTCAAAtt[G/T]ttgatatcac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTAGATGAGCAATGAGGGAGGGATTATCAAAATTTTTGCAGTTTCAAATT</left_flank>
        <right_flank>TTGATATCACTTACAACAACTGAGATAATTGAGCTCAAATTGAGCTCAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTGTGGAAAGAATATCAATAAATTTAGTGAATTTTTCGGAAGGAGAAGGCAAACTACTAAATGAGAGGTCCCAGTCGATGGTGGCGAGATCGGAGTTGAGGGAGCGCAAATTGCATTTCTTGAACCATAAACGAGGGCGAGATATGGATGGAGATAGAGGAGTGAGAGTGGTAGGAAGAATGTGGAACTTGGCGGCAAAGTGGTCAGAGTTAAGCAGTGGAGGCTCGACGGCGACGTTAGAAACAGGAAGATCATCAGAGGAGATTACAAGGTCCAGAATTTTAGCTGAGGTATCGGAGACCCGAGTTGGGAAACAGACATGTTGGTGAAGACCTCTAGAAGTGAGAAAAGAGTCAAACTGATGATTATGGTTAAGGGGATTCCAAGATAAACTGGGGAAAATAAAATCACCCACAAGAATGGAGGAATCAAGAGGGAGGAACTTATCTAGATGAGCAATGAGGGAGGGATTATCAAAATTTTTGCAGTTTCAAATTGTTGATATCACTTACAACAACTGAGATAATTGAGCTCAAATTGAGCTCAAAGTCTAGGTCTGCGTTTAGACATATGTTTTAGTAATTTCTCAGTGAAAAAGCAACATTTCACTATTACCATTAAGAGCAGAAAAAAGTAATAATCAGATTTTAGCCAAACGTTATCAACGCATATTTCGCAAGAAATTACCTTCTTATTTCATTTAAAAAACTCGGCAATTTGGAGATCCTAACACACCTTCTCAAATGAAATCGAAACATAAGTGACACATGACATCGTGTTAAAGAAAAATTATTGAGAAAAAAATGAGTTTGTATTTTTATGAGAAGAAGAAATCATGCGAGACAACAACAGTTGTTTCCAACCAAACGCACCTTATCTGTTCTCCAATTTCCAAATTTCCCTCTTTGAAGCGATTGAACCAGGAAGTCACTTCTTGTGCTGTAGTTGCTGGGAAAGTCTCATCCAGTTTTTTGACTACATCTGAAGCTTCGATTCCT</canonical>
            <polymorphic>AAGTGTGGAAAGAATATCAATAAATTTAGTGAATTTTTCGGAAGGAGAAGGCAAACTACTAAATGAGAGGTCCCAGTCGATGGTGGCGAGATCGGAGTTGAGGGAGCGCAAATTGCATTTCTTGAACCATAAACGAGGGCGAGATATGGATGGAGATAGAGGAGTGAGAGTGGTAGGAAGAATGTGGAACTTGGCGGCAAAGTGGTCAGAGTTAAGCAGTGGAGGCTCGACGGCGACGTTAGAAACAGGAAGATCATCAGAGGAGATTACAAGGTCCAGAATTTTAGCTGAGGTATCGGAGACCCGAGTTGGGAAACAGACATGTTGGTGAAGACCTCTAGAAGTGAGAAAAGAGTCAAACTGATGATTATGGTTAAGGGGATTCCAAGATAAACTGGGGAAAATAAAATCACCCACAAGAATGGAGGAATCAAGAGGGAGGAACTTATCTAGATGAGCAATGAGGGAGGGATTATCAAAATTTTTGCAGTTTCAAATTKTTGATATCACTTACAACAACTGAGATAATTGAGCTCAAATTGAGCTCAAAGTCTAGGTCTGCGTTTAGACATATGTTTTAGTAATTTCTCAGTGAAAAAGCAACATTTCACTATTACCATTAAGAGCAGAAAAAAGTAATAATCAGATTTTAGCCAAACGTTATCAACGCATATTTCGCAAGAAATTACCTTCTTATTTCATTTAAAAAACTCGGCAATTTGGAGATCCTAACACACCTTCTCAAATGAAATCGAAACATAAGTGACACATGACATCGTGTTAAAGAAAAATTATTGAGAAAAAAATGAGTTTGTATTTTTATGAGAAGAAGAAATCATGCGAGACAACAACAGTTGTTTCCAACCAAACGCACCTTATCTGTTCTCCAATTTCCAAATTTCCCTCTTTGAAGCGATTGAACCAGGAAGTCACTTCTTGTGCTGTAGTTGCTGGGAAAGTCTCATCCAGTTTTTTGACTACATCTGAAGCTTCGATTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGATAAACTGGGGAAAATAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCTGCTCTTAATGGTAATAGTGA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAGATAAACTGGGGAAAATAAAATCACCCACAAGAATGGAGGAATCAAGAGGGAGGAACTTATCTAGATGAGCAATGAGGGAGGGATTATCAAAATTTTTGCAGTTTCAAATTGTTGATATCACTTACAACAACTGAGATAATTGAGCTCAAATTGAGCTCAAAGTCTAGGTCTGCGTTTAGACATATGTTTTAGTAATTTCTCAGTGAAAAAGCAACATTTCACTATTACCATTAAGAGCAGAA</canonical_amplicon>
		<polymorphic_amplicon>AAGATAAACTGGGGAAAATAAAATCACCCACAAGAATGGAGGAATCAAGAGGGAGGAACTTATCTAGATGAGCAATGAGGGAGGGATTATCAAAATTTTTGCAGTTTCAAATTKTTGATATCACTTACAACAACTGAGATAATTGAGCTCAAATTGAGCTCAAAGTCTAGGTCTGCGTTTAGACATATGTTTTAGTAATTTCTCAGTGAAAAAGCAACATTTCACTATTACCATTAAGAGCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29797</snp_id>
        <super_contig>c004900897.Contig1</super_contig>
        <contig_pos>5379</contig_pos>
        <strand>+</strand>
        <context>ACACATTTAT[A/G]TAAATTTTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAATTAAAAATATTGCACACCTTCCGTCCGAATTCCGGTACACATTTAT</left_flank>
        <right_flank>TAAATTTTCCAAATATTCCAGAGCATTTGAAGTTTGAATATCTAAAAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATTCCTCCTTATCGACTCTTCTAATTTCTCAAAACTTCTCGGGATTACTGTACCATTCGCATTCTCAAATCTCCTTACTAAAAGCACATTTTTCGACTTTCCATCAATCATTTTATTGGCAATTTTCTTAATTTTCAGAGCCATTCCTTCACTAATTATCATATCTCCATCCATTATAAAATGTATGTCAGATTTGGCTCCCCATCTTGCGACATTTCTCATCAAACTACACGGATACAGTACGAATGGAGCTGATATTTCAGCGCGCAGTGTTTCTTCTGCAATTTTTTATTATTTTGGGATTTCAAAAATCGAATTACGGTTTTTCAAAAAGTAATCACATGAAATTTTGGATTTTGGAATAAAAACTGTTGGACAATCAGTTTGAAAAGCAGATATTCGATAGGCAAAATGAATGGACATCTGGAAATGTCGATTTACAGATGGACAATTAAAAATATTGCACACCTTCCGTCCGAATTCCGGTACACATTTATATAAATTTTCCAAATATTCCAGAGCATTTGAAGTTTGAATATCTAAAAATATTCCAACTGAAATTGGTCCATCCCATAGATTTGGCATATTTTCTAAAGTTTTCAGCATATCTGATGTGGCATGAGTGGATAGAGTGATTGGTTCCAGACCATCCGATTCTCGGAATCTGGAAATCTGGAGTTACAGACACACAGATGGGAAATTTCTGAATTTTTAGATTCTTAAACGTTTTAGGTGTCCGAATTGTTTTTGATATTCGGAATTTCTGAATTTTCAAATTTCCCAAAACTTACGAATCTTTGGCTTCCACGAAATTCAATCCAATACAATATTGCTCATCATATAAATTTGTCGGGATTACTGTATATTCTCGGAATATTTGAAATAGCGACGACGTCGAGTTTTCAGGATTCTGAATTGTGAAATTTTCGTGATTGTGAGGTTTTTGATAGTTTTCAGAAAGATTTGGATTCTGAAATATTTTCCATTCCTTTCAAAAA</canonical>
            <polymorphic>TGATTCCTCCTTATCGACTCTTCTAATTTCTCAAAACTTCTCGGGATTACTGTACCATTCGCATTCTCAAATCTCCTTACTAAAAGCACATTTTTCGACTTTCCATCAATCATTTTATTGGCAATTTTCTTAATTTTCAGAGCCATTCCTTCACTAATTATCATATCTCCATCCATTATAAAATGTATGTCAGATTTGGCTCCCCATCTTGCGACATTTCTCATCAAACTACACGGATACAGTACGAATGGAGCTGATATTTCAGCGCGCAGTGTTTCTTCTGCAATTTTTTATTATTTTGGGATTTCAAAAATCGAATTACGGTTTTTCAAAAAGTAATCACATGAAATTTTGGATTTTGGAATAAAAACTGTTGGACAATCAGTTTGAAAAGCAGATATTCGATAGGCAAAATGAATGGACATCTGGAAATGTCGATTTACAGATGGACAATTAAAAATATTGCACACCTTCCGTCCGAATTCCGGTACACATTTATRTAAATTTTCCAAATATTCCAGAGCATTTGAAGTTTGAATATCTAAAAATATTCCAACTGAAATTGGTCCATCCCATAGATTTGGCATATTTTCTAAAGTTTTCAGCATATCTGATGTGGCATGAGTGGATAGAGTGATTGGTTCCAGACCATCCGATTCTCGGAATCTGGAAATCTGGAGTTACAGACACACAGATGGGAAATTTCTGAATTTTTAGATTCTTAAACGTTTTAGGTGTCCGAATTGTTTTTGATATTCGGAATTTCTGAATTTTCAAATTTCCCAAAACTTACGAATCTTTGGCTTCCACGAAATTCAATCCAATACAATATTGCTCATCATATAAATTTGTCGGGATTACTGTATATTCTCGGAATATTTGAAATAGCGACGACGTCGAGTTTTCAGGATTCTGAATTGTGAAATTTTCGTGATTGTGAGGTTTTTGATAGTTTTCAGAAAGATTTGGATTCTGAAATATTTTCCATTCCTTTCAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGACAATTAAAAATATTGCACAC</pcr_primer_p1>
		<pcr_primer_p2>GTGTGTCTGTAACTCCAGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GGACAATTAAAAATATTGCACACCTTCCGTCCGAATTCCGGTACACATTTATATAAATTTTCCAAATATTCCAGAGCATTTGAAGTTTGAATATCTAAAAATATTCCAACTGAAATTGGTCCATCCCATAGATTTGGCATATTTTCTAAAGTTTTCAGCATATCTGATGTGGCATGAGTGGATAGAGTGATTGGTTCCAGACCATCCGATTCTCGGAATCTGGAAATCTGGAGTTACAGACACAC</canonical_amplicon>
		<polymorphic_amplicon>GGACAATTAAAAATATTGCACACCTTCCGTCCGAATTCCGGTACACATTTATRTAAATTTTCCAAATATTCCAGAGCATTTGAAGTTTGAATATCTAAAAATATTCCAACTGAAATTGGTCCATCCCATAGATTTGGCATATTTTCTAAAGTTTTCAGCATATCTGATGTGGCATGAGTGGATAGAGTGATTGGTTCCAGACCATCCGATTCTCGGAATCTGGAAATCTGGAGTTACAGACACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29798</snp_id>
        <super_contig>c004900897.Contig1</super_contig>
        <contig_pos>6360</contig_pos>
        <strand></strand>
        <context>ctgagattct[A/G]agattctcag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGAAATTCTGAGATTCAGAGATTCAGAGATTCTGAGATTCTGAGATTCT</left_flank>
        <right_flank>AGATTCTCAGATTCTGAGATTCTGAGATTATGAGATTCTGAGATTCTGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCATTCCTTTCAAAAATCTGAAAATTTCAAAACTCACCGCCAAAATTAAGAACAAAACTAGAAAAAATATGACAAAAATTATAAAAATCTGATGGGATAATCGAAATTGTCTGGTCATTTTGAATCCGAAGAAAGATTTTCGAATTCATTTATATACAATTTTTTTCTGAAAAATCCAAAAATGCCGATCCATTTTTTCGATTTCTCTATTTTTTTCAATTCGGTAGACTTCATTTCGGAAATTTTGATTTTTCTTTTTTTCTTGGATAATTTCCGTAGATCAGATAACAAATTTCCATTGCAGGGGAAACGAGAATTGGTAATCAAAAAAATTCATAAAATCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCAGAGATTCAGAGATTCTGAGATTCTGAGATTCTAAGATTCTCAGATTCTGAGATTCTGAGATTATGAGATTCTGAGATTCTGAATTTGTAGCTCAAATTCAGAAAAATATTTATTTTCAAAAACTTGAGATCTAAAATCTATAAAAAGTTAAAAAAAATTCAAAAATTCAGAATCCTAAGCAAATGAAAATTCTCCACATTTTTTCAGTGTCCATGGGTAAACCTCTCCCATTTCCTTCTTGAATTTGTCACGGGCTCTGAAAATCCAACAAATGGAACTTTAGTGATATCAGTCAGTTTTTTTTTTTCAAACTGATGACTCTGGTGTGCCTTCGATGCGATTCTACCCAACTTCTTTCTCCTTCAAAGGAAAATACCGTATTCCCTCTAACAGAATTCAAATCGAGCTCAATTATCTCGATTCCTGTGAAAGATATCAAAAACTTGTCAACTGATAAATTTTTTATCATAACATCACCAATATTTGATGAGTTGACAAAATCTTGATATCTGTCATAAGAATTGAGACAATTG</canonical>
            <polymorphic>TTTCCATTCCTTTCAAAAATCTGAAAATTTCAAAACTCACCGCCAAAATTAAGAACAAAACTAGAAAAAATATGACAAAAATTATAAAAATCTGATGGGATAATCGAAATTGTCTGGTCATTTTGAATCCGAAGAAAGATTTTCGAATTCATTTATATACAATTTTTTTCTGAAAAATCCAAAAATGCCGATCCATTTTTTCGATTTCTCTATTTTTTTCAATTCGGTAGACTTCATTTCGGAAATTTTGATTTTTCTTTTTTTCTTGGATAATTTCCGTAGATCAGATAACAAATTTCCATTGCAGGGGAAACGAGAATTGGTAATCAAAAAAATTCATAAAATCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCAGAGATTCAGAGATTCTGAGATTCTGAGATTCTRAGATTCTCAGATTCTGAGATTCTGAGATTATGAGATTCTGAGATTCTGAATTTGTAGCTCAAATTCAGAAAAATATTTATTTTCAAAAACTTGAGATCTAAAATCTATAAAAAGTTAAAAAAAATTCAAAAATTCAGAATCCTAAGCAAATGAAAATTCTCCACATTTTTTCAGTGTCCATGGGTAAACCTCTCCCATTTCCTTCTTGAATTTGTCACGGGCTCTGAAAATCCAACAAATGGAACTTTAGTGATATCAGTCAGTTTTTTTTTTTCAAACTGATGACTCTGGTGTGCCTTCGATGCGATTCTACCCAACTTCTTTCTCCTTCAAAGGAAAATACCGTATTCCCTCTAACAGAATTCAAATCGAGCTCAATTATCTCGATTCCTGTGAAAGATATCAAAAACTTGTCAACTGATAAATTTTTTATCATAACATCACCAATATTTGATGAGTTGACAAAATCTTGATATCTGTCATAAGAATTGAGACAATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCAGATAACAAATTTCCATTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTCATTTGCTTAGGATTCTG</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>GATCAGATAACAAATTTCCATTGCAGGGGAAACGAGAATTGGTAATCAAAAAAATTCATAAAATCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCAGAGATTCAGAGATTCTGAGATTCTGAGATTCTAAGATTCTCAGATTCTGAGATTCTGAGATTATGAGATTCTGAGATTCTGAATTTGTAGCTCAAATTCAGAAAAATATTTATTTTCAAAAACTTGAGATCTAAAATCTATAAAAAGTTAAAAAAAATTCAAAAATTCAGAATCCTAAGCAAATGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GATCAGATAACAAATTTCCATTGCAGGGGAAACGAGAATTGGTAATCAAAAAAATTCATAAAATCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCAGAGATTCAGAGATTCTGAGATTCTGAGATTCTRAGATTCTCAGATTCTGAGATTCTGAGATTATGAGATTCTGAGATTCTGAATTTGTAGCTCAAATTCAGAAAAATATTTATTTTCAAAAACTTGAGATCTAAAATCTATAAAAAGTTAAAAAAAATTCAAAAATTCAGAATCCTAAGCAAATGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29799</snp_id>
        <super_contig>c004900897.Contig1</super_contig>
        <contig_pos>6487</contig_pos>
        <strand></strand>
        <context>AAAAAAAATT[C/T]AAAAYTTCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATTTTCAAAAACTTGAGATCTAAAATCTATAAAAAGTTAAAAAAAATT</left_flank>
        <right_flank>AAAAATTCAGAATCCTAAGCAAATGAAAATTCTCCACATTTTTTCAGTGT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCGAAGAAAGATTTTCGAATTCATTTATATACAATTTTTTTCTGAAAAATCCAAAAATGCCGATCCATTTTTTCGATTTCTCTATTTTTTTCAATTCGGTAGACTTCATTTCGGAAATTTTGATTTTTCTTTTTTTCTTGGATAATTTCCGTAGATCAGATAACAAATTTCCATTGCAGGGGAAACGAGAATTGGTAATCAAAAAAATTCATAAAATCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCAGAGATTCAGAGATTCTGAGATTCTGAGATTCTAAGATTCTCAGATTCTGAGATTCTGAGATTATGAGATTCTGAGATTCTGAATTTGTAGCTCAAATTCAGAAAAATATTTATTTTCAAAAACTTGAGATCTAAAATCTATAAAAAGTTAAAAAAAATTCAAAAATTCAGAATCCTAAGCAAATGAAAATTCTCCACATTTTTTCAGTGTCCATGGGTAAACCTCTCCCATTTCCTTCTTGAATTTGTCACGGGCTCTGAAAATCCAACAAATGGAACTTTAGTGATATCAGTCAGTTTTTTTTTTTCAAACTGATGACTCTGGTGTGCCTTCGATGCGATTCTACCCAACTTCTTTCTCCTTCAAAGGAAAATACCGTATTCCCTCTAACAGAATTCAAATCGAGCTCAATTATCTCGATTCCTGTGAAAGATATCAAAAACTTGTCAACTGATAAATTTTTTATCATAACATCACCAATATTTGATGAGTTGACAAAATCTTGATATCTGTCATAAGAATTGAGACAATTGAGCTCATAGTTAACGGTTTCGGTGGGCATCTGTTAGAGAAAATACTGTAAGTAAATAATTGTTTGTAATAATTGTTAGTAATTGTAAGTAGTTGTTTCTCAATTATGAAAAATTCCTCACAAAATCA</canonical>
            <polymorphic>TCCGAAGAAAGATTTTCGAATTCATTTATATACAATTTTTTTCTGAAAAATCCAAAAATGCCGATCCATTTTTTCGATTTCTCTATTTTTTTCAATTCGGTAGACTTCATTTCGGAAATTTTGATTTTTCTTTTTTTCTTGGATAATTTCCGTAGATCAGATAACAAATTTCCATTGCAGGGGAAACGAGAATTGGTAATCAAAAAAATTCATAAAATCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCAGAGATTCAGAGATTCTGAGATTCTGAGATTCTAAGATTCTCAGATTCTGAGATTCTGAGATTATGAGATTCTGAGATTCTGAATTTGTAGCTCAAATTCAGAAAAATATTTATTTTCAAAAACTTGAGATCTAAAATCTATAAAAAGTTAAAAAAAATTYAAAAATTCAGAATCCTAAGCAAATGAAAATTCTCCACATTTTTTCAGTGTCCATGGGTAAACCTCTCCCATTTCCTTCTTGAATTTGTCACGGGCTCTGAAAATCCAACAAATGGAACTTTAGTGATATCAGTCAGTTTTTTTTTTTCAAACTGATGACTCTGGTGTGCCTTCGATGCGATTCTACCCAACTTCTTTCTCCTTCAAAGGAAAATACCGTATTCCCTCTAACAGAATTCAAATCGAGCTCAATTATCTCGATTCCTGTGAAAGATATCAAAAACTTGTCAACTGATAAATTTTTTATCATAACATCACCAATATTTGATGAGTTGACAAAATCTTGATATCTGTCATAAGAATTGAGACAATTGAGCTCATAGTTAACGGTTTCGGTGGGCATCTGTTAGAGAAAATACTGTAAGTAAATAATTGTTTGTAATAATTGTTAGTAATTGTAAGTAGTTGTTTCTCAATTATGAAAAATTCCTCACAAAATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>187 152 120 98 95 63 61 54 50 40 24 18 17 13 8</canonical_bands>
                <polymorphic_bands>187 152 120 98 95 69 63 54 50 40 24 18 17 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCAGATAACAAATTTCCATTG</pcr_primer_p1>
		<pcr_primer_p2>GTTTACCCATGGACACTGAA</pcr_primer_p2>
		<pcr_amplicon_size>408</pcr_amplicon_size>
		<canonical_amplicon>GATCAGATAACAAATTTCCATTGCAGGGGAAACGAGAATTGGTAATCAAAAAAATTCATAAAATCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCAGAGATTCAGAGATTCTGAGATTCTGAGATTCTAAGATTCTCAGATTCTGAGATTCTGAGATTATGAGATTCTGAGATTCTGAATTTGTAGCTCAAATTCAGAAAAATATTTATTTTCAAAAACTTGAGATCTAAAATCTATAAAAAGTTAAAAAAAATTCAAAAATTCAGAATCCTAAGCAAATGAAAATTCTCCACATTTTTTCAGTGTCCATGGGTAAAC</canonical_amplicon>
		<polymorphic_amplicon>GATCAGATAACAAATTTCCATTGCAGGGGAAACGAGAATTGGTAATCAAAAAAATTCATAAAATCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCAGAGATTCAGAGATTCTGAGATTCTGAGATTCTAAGATTCTCAGATTCTGAGATTCTGAGATTATGAGATTCTGAGATTCTGAATTTGTAGCTCAAATTCAGAAAAATATTTATTTTCAAAAACTTGAGATCTAAAATCTATAAAAAGTTAAAAAAAATTYAAAAATTCAGAATCCTAAGCAAATGAAAATTCTCCACATTTTTTCAGTGTCCATGGGTAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29800</snp_id>
        <super_contig>c004900897.Contig1</super_contig>
        <contig_pos>6492</contig_pos>
        <strand>+</strand>
        <context>AAATTYAAAA[C/T]TTCAGAATCC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAAAAACTTGAGATCTAAAATCTATAAAAAGTTAAAAAAAATTCAAAA</left_flank>
        <right_flank>TTCAGAATCCTAAGCAAATGAAAATTCTCCACATTTTTTCAGTGTCCATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAAGATTTTCGAATTCATTTATATACAATTTTTTTCTGAAAAATCCAAAAATGCCGATCCATTTTTTCGATTTCTCTATTTTTTTCAATTCGGTAGACTTCATTTCGGAAATTTTGATTTTTCTTTTTTTCTTGGATAATTTCCGTAGATCAGATAACAAATTTCCATTGCAGGGGAAACGAGAATTGGTAATCAAAAAAATTCATAAAATCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCAGAGATTCAGAGATTCTGAGATTCTGAGATTCTAAGATTCTCAGATTCTGAGATTCTGAGATTATGAGATTCTGAGATTCTGAATTTGTAGCTCAAATTCAGAAAAATATTTATTTTCAAAAACTTGAGATCTAAAATCTATAAAAAGTTAAAAAAAATTCAAAAATTCAGAATCCTAAGCAAATGAAAATTCTCCACATTTTTTCAGTGTCCATGGGTAAACCTCTCCCATTTCCTTCTTGAATTTGTCACGGGCTCTGAAAATCCAACAAATGGAACTTTAGTGATATCAGTCAGTTTTTTTTTTTCAAACTGATGACTCTGGTGTGCCTTCGATGCGATTCTACCCAACTTCTTTCTCCTTCAAAGGAAAATACCGTATTCCCTCTAACAGAATTCAAATCGAGCTCAATTATCTCGATTCCTGTGAAAGATATCAAAAACTTGTCAACTGATAAATTTTTTATCATAACATCACCAATATTTGATGAGTTGACAAAATCTTGATATCTGTCATAAGAATTGAGACAATTGAGCTCATAGTTAACGGTTTCGGTGGGCATCTGTTAGAGAAAATACTGTAAGTAAATAATTGTTTGTAATAATTGTTAGTAATTGTAAGTAGTTGTTTCTCAATTATGAAAAATTCCTCACAAAATCATCGCT</canonical>
            <polymorphic>AGAAAGATTTTCGAATTCATTTATATACAATTTTTTTCTGAAAAATCCAAAAATGCCGATCCATTTTTTCGATTTCTCTATTTTTTTCAATTCGGTAGACTTCATTTCGGAAATTTTGATTTTTCTTTTTTTCTTGGATAATTTCCGTAGATCAGATAACAAATTTCCATTGCAGGGGAAACGAGAATTGGTAATCAAAAAAATTCATAAAATCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCAGAGATTCAGAGATTCTGAGATTCTGAGATTCTAAGATTCTCAGATTCTGAGATTCTGAGATTATGAGATTCTGAGATTCTGAATTTGTAGCTCAAATTCAGAAAAATATTTATTTTCAAAAACTTGAGATCTAAAATCTATAAAAAGTTAAAAAAAATTCAAAAYTTCAGAATCCTAAGCAAATGAAAATTCTCCACATTTTTTCAGTGTCCATGGGTAAACCTCTCCCATTTCCTTCTTGAATTTGTCACGGGCTCTGAAAATCCAACAAATGGAACTTTAGTGATATCAGTCAGTTTTTTTTTTTCAAACTGATGACTCTGGTGTGCCTTCGATGCGATTCTACCCAACTTCTTTCTCCTTCAAAGGAAAATACCGTATTCCCTCTAACAGAATTCAAATCGAGCTCAATTATCTCGATTCCTGTGAAAGATATCAAAAACTTGTCAACTGATAAATTTTTTATCATAACATCACCAATATTTGATGAGTTGACAAAATCTTGATATCTGTCATAAGAATTGAGACAATTGAGCTCATAGTTAACGGTTTCGGTGGGCATCTGTTAGAGAAAATACTGTAAGTAAATAATTGTTTGTAATAATTGTTAGTAATTGTAAGTAGTTGTTTCTCAATTATGAAAAATTCCTCACAAAATCATCGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>187 152 120 98 95 63 61 54 50 40 24 22 13 13 8</canonical_bands>
                <polymorphic_bands>187 152 120 98 95 63 61 54 50 40 32 22 13 13</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>152 120 95 63 61 61 60 54 47 28 24 24 23 22 22 21 16 16 15 13 13 13 10 10 9 8</canonical_bands>
                <polymorphic_bands>152 120 95 63 61 61 60 54 47 32 28 24 23 22 22 21 16 16 15 13 13 13 10 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCAGATAACAAATTTCCATTG</pcr_primer_p1>
		<pcr_primer_p2>GTTTACCCATGGACACTGAA</pcr_primer_p2>
		<pcr_amplicon_size>408</pcr_amplicon_size>
		<canonical_amplicon>GATCAGATAACAAATTTCCATTGCAGGGGAAACGAGAATTGGTAATCAAAAAAATTCATAAAATCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCAGAGATTCAGAGATTCTGAGATTCTGAGATTCTAAGATTCTCAGATTCTGAGATTCTGAGATTATGAGATTCTGAGATTCTGAATTTGTAGCTCAAATTCAGAAAAATATTTATTTTCAAAAACTTGAGATCTAAAATCTATAAAAAGTTAAAAAAAATTCAAAAATTCAGAATCCTAAGCAAATGAAAATTCTCCACATTTTTTCAGTGTCCATGGGTAAAC</canonical_amplicon>
		<polymorphic_amplicon>GATCAGATAACAAATTTCCATTGCAGGGGAAACGAGAATTGGTAATCAAAAAAATTCATAAAATCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCAGAGATTCAGAGATTCTGAGATTCTGAGATTCTAAGATTCTCAGATTCTGAGATTCTGAGATTATGAGATTCTGAGATTCTGAATTTGTAGCTCAAATTCAGAAAAATATTTATTTTCAAAAACTTGAGATCTAAAATCTATAAAAAGTTAAAAAAAATTCAAAAYTTCAGAATCCTAAGCAAATGAAAATTCTCCACATTTTTTCAGTGTCCATGGGTAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29801</snp_id>
        <super_contig>c004900897.Contig1</super_contig>
        <contig_pos>6790</contig_pos>
        <strand></strand>
        <context>gataaatttt[T/C]tatcataaca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TATCTCGATTCCTGTGAAAGATATCAAAAACTTGTCAACTGATAAATTTT</left_flank>
        <right_flank>TATCATAACATCACCAATATTTGATGAGTTGACAAAATCTTGATATCTGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCAGAGATTCAGAGATTCTGAGATTCTGAGATTCTAAGATTCTCAGATTCTGAGATTCTGAGATTATGAGATTCTGAGATTCTGAATTTGTAGCTCAAATTCAGAAAAATATTTATTTTCAAAAACTTGAGATCTAAAATCTATAAAAAGTTAAAAAAAATTCAAAAATTCAGAATCCTAAGCAAATGAAAATTCTCCACATTTTTTCAGTGTCCATGGGTAAACCTCTCCCATTTCCTTCTTGAATTTGTCACGGGCTCTGAAAATCCAACAAATGGAACTTTAGTGATATCAGTCAGTTTTTTTTTTTCAAACTGATGACTCTGGTGTGCCTTCGATGCGATTCTACCCAACTTCTTTCTCCTTCAAAGGAAAATACCGTATTCCCTCTAACAGAATTCAAATCGAGCTCAATTATCTCGATTCCTGTGAAAGATATCAAAAACTTGTCAACTGATAAATTTTTTATCATAACATCACCAATATTTGATGAGTTGACAAAATCTTGATATCTGTCATAAGAATTGAGACAATTGAGCTCATAGTTAACGGTTTCGGTGGGCATCTGTTAGAGAAAATACTGTAAGTAAATAATTGTTTGTAATAATTGTTAGTAATTGTAAGTAGTTGTTTCTCAATTATGAAAAATTCCTCACAAAATCATCGCTGCAGCTTCTTGATGAGTGATTGAAGCCTTTGAGTATACTGTATTTGTATGTTTTATCCCATTATGAATACTGAATACGTGGCTGGGTAAGTGGAATGTGTAGCCGTCCCGACACAGCTCGTAGATCTGAAAAATTTGTCATAGGAAACTTGAACCCAATTTATCTTGATTTTCGTGAATAGGGTTGGCTATGGGGCGAAATCAAAATTGCGGACGTGCGGGCCGTGGCGGGCCCTGTCGTAGTTTCTTTTAGGATTGATATTTTTTGACCAACTAAATTAGATATGGTAGAACTCGAC</canonical>
            <polymorphic>ATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCAGAGATTCAGAGATTCTGAGATTCTGAGATTCTAAGATTCTCAGATTCTGAGATTCTGAGATTATGAGATTCTGAGATTCTGAATTTGTAGCTCAAATTCAGAAAAATATTTATTTTCAAAAACTTGAGATCTAAAATCTATAAAAAGTTAAAAAAAATTCAAAAATTCAGAATCCTAAGCAAATGAAAATTCTCCACATTTTTTCAGTGTCCATGGGTAAACCTCTCCCATTTCCTTCTTGAATTTGTCACGGGCTCTGAAAATCCAACAAATGGAACTTTAGTGATATCAGTCAGTTTTTTTTTTTCAAACTGATGACTCTGGTGTGCCTTCGATGCGATTCTACCCAACTTCTTTCTCCTTCAAAGGAAAATACCGTATTCCCTCTAACAGAATTCAAATCGAGCTCAATTATCTCGATTCCTGTGAAAGATATCAAAAACTTGTCAACTGATAAATTTTYTATCATAACATCACCAATATTTGATGAGTTGACAAAATCTTGATATCTGTCATAAGAATTGAGACAATTGAGCTCATAGTTAACGGTTTCGGTGGGCATCTGTTAGAGAAAATACTGTAAGTAAATAATTGTTTGTAATAATTGTTAGTAATTGTAAGTAGTTGTTTCTCAATTATGAAAAATTCCTCACAAAATCATCGCTGCAGCTTCTTGATGAGTGATTGAAGCCTTTGAGTATACTGTATTTGTATGTTTTATCCCATTATGAATACTGAATACGTGGCTGGGTAAGTGGAATGTGTAGCCGTCCCGACACAGCTCGTAGATCTGAAAAATTTGTCATAGGAAACTTGAACCCAATTTATCTTGATTTTCGTGAATAGGGTTGGCTATGGGGCGAAATCAAAATTGCGGACGTGCGGGCCGTGGCGGGCCCTGTCGTAGTTTCTTTTAGGATTGATATTTTTTGACCAACTAAATTAGATATGGTAGAACTCGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCCTTCAAAGGAAAATACC</pcr_primer_p1>
		<pcr_primer_p2>TCATAATTGAGAAACAACTACTTACA</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>TCTCCTTCAAAGGAAAATACCGTATTCCCTCTAACAGAATTCAAATCGAGCTCAATTATCTCGATTCCTGTGAAAGATATCAAAAACTTGTCAACTGATAAATTTTTTATCATAACATCACCAATATTTGATGAGTTGACAAAATCTTGATATCTGTCATAAGAATTGAGACAATTGAGCTCATAGTTAACGGTTTCGGTGGGCATCTGTTAGAGAAAATACTGTAAGTAAATAATTGTTTGTAATAATTGTTAGTAATTGTAAGTAGTTGTTTCTCAATTATGA</canonical_amplicon>
		<polymorphic_amplicon>TCTCCTTCAAAGGAAAATACCGTATTCCCTCTAACAGAATTCAAATCGAGCTCAATTATCTCGATTCCTGTGAAAGATATCAAAAACTTGTCAACTGATAAATTTTYTATCATAACATCACCAATATTTGATGAGTTGACAAAATCTTGATATCTGTCATAAGAATTGAGACAATTGAGCTCATAGTTAACGGTTTCGGTGGGCATCTGTTAGAGAAAATACTGTAAGTAAATAATTGTTTGTAATAATTGTTAGTAATTGTAAGTAGTTGTTTCTCAATTATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29802</snp_id>
        <super_contig>c004900897.Contig1</super_contig>
        <contig_pos>29386</contig_pos>
        <strand>+</strand>
        <context>TTGGATTTTG[A/T]TGATTTTAAR</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CACATACATTTCAAAACTTCTGTAACTTGCTTCAAATATTTTGGATTTTG</left_flank>
        <right_flank>TGATTTTAAAGCTATAAGAAAGCTCTGTTTTCCAGCTTTCTGTTAATATA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAAATGGTAGAGACCAGTAGTTTTGCAGAAGGAGGTGGTCAACAAATTACAATGAGAACTTTGGCAACTTGATTTTTTCTAATTTTTGTCGTTTTATTTTGGTTTTTTTACAAAAATTTTCAGCATGTTTCTCAAGTTCCACTTTTTTCGCATAATTTTGTCAATTAATAAACTGCTTTAGCTTTCTGAATTCATTAAAAACCATTGATTACCATCACTAAATAATGCACAAAATAGCAAAAAAAGAAAAAAAATTTCGCTCCCGGGTGGGCTCGAACCACCAACCTTTCGGTTAACAGCCGAACGCGCTGCCTATTGCGCCACGGAAGCAGGCGAGAGAGGGAGGTGGGCAAGGCGTATATAAAAGAAGGGTCGGCGGAAGAGGCGCAGAGGCGCGAGGCAAGAAGTGGAGAGAGATAAGAGGAAGCGTCGAAGTGTGTACAGGGACACATACATTTCAAAACTTCTGTAACTTGCTTCAAATATTTTGGATTTTGTTGATTTTAAAGCTATAAGAAAGCTCTGTTTTCCAGCTTTCTGTTAATATAAGTATTGATTGAAAATGTTCATGGTAAGTGGCTCAAAAACAGAAAATACTAACAATATCCCTTGTTCGAAACCTAGTCCTTGAGGCTCTCAGGGATTATATAGTAGACGTAGTTTTGTTTATTTAATTAATTTCCAAAAACTTAGAAAAAGTAAGATCCCATGGGCACTATTAGCAAAACTCTAAAACGAACTAAAGTTTCTAGGTAAATGATCTAACCGCTATCAAGGCAGATGCTCTTCACTACTTGCCCCTTTTCAGCTCAACTATCTCCATTACCGTAGAAGATATAAAAAAATCTGCAAACTGCAAAAATGTAGGTGATATTATGGCAAACATTTTATCAGTTGACAAATTTTTGATATCTCTTACAGGAATCGAGATAATTGAGCGCAAAGGGCGAGAACTTTGAACTCAAGTATCTCGGTTACTCTGAGAGAATTGAAAAAAT</canonical>
            <polymorphic>ATAAAATGGTAGAGACCAGTAGTTTTGCAGAAGGAGGTGGTCAACAAATTACAATGAGAACTTTGGCAACTTGATTTTTTCTAATTTTTGTCGTTTTATTTTGGTTTTTTTACAAAAATTTTCAGCATGTTTCTCAAGTTCCACTTTTTTCGCATAATTTTGTCAATTAATAAACTGCTTTAGCTTTCTGAATTCATTAAAAACCATTGATTACCATCACTAAATAATGCACAAAATAGCAAAAAAAGAAAAAAAATTTCGCTCCCGGGTGGGCTCGAACCACCAACCTTTCGGTTAACAGCCGAACGCGCTGCCTATTGCGCCACGGAAGCAGGCGAGAGAGGGAGGTGGGCAAGGCGTATATAAAAGAAGGGTCGGCGGAAGAGGCGCAGAGGCGCGAGGCAAGAAGTGGAGAGAGATAAGAGGAAGCGTCGAAGTGTGTACAGGGACACATACATTTCAAAACTTCTGTAACTTGCTTCAAATATTTTGGATTTTGWTGATTTTAAAGCTATAAGAAAGCTCTGTTTTCCAGCTTTCTGTTAATATAAGTATTGATTGAAAATGTTCATGGTAAGTGGCTCAAAAACAGAAAATACTAACAATATCCCTTGTTCGAAACCTAGTCCTTGAGGCTCTCAGGGATTATATAGTAGACGTAGTTTTGTTTATTTAATTAATTTCCAAAAACTTAGAAAAAGTAAGATCCCATGGGCACTATTAGCAAAACTCTAAAACGAACTAAAGTTTCTAGGTAAATGATCTAACCGCTATCAAGGCAGATGCTCTTCACTACTTGCCCCTTTTCAGCTCAACTATCTCCATTACCGTAGAAGATATAAAAAAATCTGCAAACTGCAAAAATGTAGGTGATATTATGGCAAACATTTTATCAGTTGACAAATTTTTGATATCTCTTACAGGAATCGAGATAATTGAGCGCAAAGGGCGAGAACTTTGAACTCAAGTATCTCGGTTACTCTGAGAGAATTGAAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGTGGAGAGAGATAAGAGGA</pcr_primer_p1>
		<pcr_primer_p2>ACGTCTACTATATAATCCCTGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AGAAGTGGAGAGAGATAAGAGGAAGCGTCGAAGTGTGTACAGGGACACATACATTTCAAAACTTCTGTAACTTGCTTCAAATATTTTGGATTTTGTTGATTTTAAAGCTATAAGAAAGCTCTGTTTTCCAGCTTTCTGTTAATATAAGTATTGATTGAAAATGTTCATGGTAAGTGGCTCAAAAACAGAAAATACTAACAATATCCCTTGTTCGAAACCTAGTCCTTGAGGCTCTCAGGGATTATATAGTAGACGT</canonical_amplicon>
		<polymorphic_amplicon>AGAAGTGGAGAGAGATAAGAGGAAGCGTCGAAGTGTGTACAGGGACACATACATTTCAAAACTTCTGTAACTTGCTTCAAATATTTTGGATTTTGWTGATTTTAAAGCTATAAGAAAGCTCTGTTTTCCAGCTTTCTGTTAATATAAGTATTGATTGAAAATGTTCATGGTAAGTGGCTCAAAAACAGAAAATACTAACAATATCCCTTGTTCGAAACCTAGTCCTTGAGGCTCTCAGGGATTATATAGTAGACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29803</snp_id>
        <super_contig>c004900897.Contig1</super_contig>
        <contig_pos>29396</contig_pos>
        <strand>+</strand>
        <context>WTGATTTTAA[A/G]RCTATAAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAAAACTTCTGTAACTTGCTTCAAATATTTTGGATTTTGTTGATTTTAA</left_flank>
        <right_flank>GCTATAAGAAAGCTCTGTTTTCCAGCTTTCTGTTAATATAAGTATTGATT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGACCAGTAGTTTTGCAGAAGGAGGTGGTCAACAAATTACAATGAGAACTTTGGCAACTTGATTTTTTCTAATTTTTGTCGTTTTATTTTGGTTTTTTTACAAAAATTTTCAGCATGTTTCTCAAGTTCCACTTTTTTCGCATAATTTTGTCAATTAATAAACTGCTTTAGCTTTCTGAATTCATTAAAAACCATTGATTACCATCACTAAATAATGCACAAAATAGCAAAAAAAGAAAAAAAATTTCGCTCCCGGGTGGGCTCGAACCACCAACCTTTCGGTTAACAGCCGAACGCGCTGCCTATTGCGCCACGGAAGCAGGCGAGAGAGGGAGGTGGGCAAGGCGTATATAAAAGAAGGGTCGGCGGAAGAGGCGCAGAGGCGCGAGGCAAGAAGTGGAGAGAGATAAGAGGAAGCGTCGAAGTGTGTACAGGGACACATACATTTCAAAACTTCTGTAACTTGCTTCAAATATTTTGGATTTTGTTGATTTTAAAGCTATAAGAAAGCTCTGTTTTCCAGCTTTCTGTTAATATAAGTATTGATTGAAAATGTTCATGGTAAGTGGCTCAAAAACAGAAAATACTAACAATATCCCTTGTTCGAAACCTAGTCCTTGAGGCTCTCAGGGATTATATAGTAGACGTAGTTTTGTTTATTTAATTAATTTCCAAAAACTTAGAAAAAGTAAGATCCCATGGGCACTATTAGCAAAACTCTAAAACGAACTAAAGTTTCTAGGTAAATGATCTAACCGCTATCAAGGCAGATGCTCTTCACTACTTGCCCCTTTTCAGCTCAACTATCTCCATTACCGTAGAAGATATAAAAAAATCTGCAAACTGCAAAAATGTAGGTGATATTATGGCAAACATTTTATCAGTTGACAAATTTTTGATATCTCTTACAGGAATCGAGATAATTGAGCGCAAAGGGCGAGAACTTTGAACTCAAGTATCTCGGTTACTCTGAGAGAATTGAAAAAATTGTCAACTGA</canonical>
            <polymorphic>AGAGACCAGTAGTTTTGCAGAAGGAGGTGGTCAACAAATTACAATGAGAACTTTGGCAACTTGATTTTTTCTAATTTTTGTCGTTTTATTTTGGTTTTTTTACAAAAATTTTCAGCATGTTTCTCAAGTTCCACTTTTTTCGCATAATTTTGTCAATTAATAAACTGCTTTAGCTTTCTGAATTCATTAAAAACCATTGATTACCATCACTAAATAATGCACAAAATAGCAAAAAAAGAAAAAAAATTTCGCTCCCGGGTGGGCTCGAACCACCAACCTTTCGGTTAACAGCCGAACGCGCTGCCTATTGCGCCACGGAAGCAGGCGAGAGAGGGAGGTGGGCAAGGCGTATATAAAAGAAGGGTCGGCGGAAGAGGCGCAGAGGCGCGAGGCAAGAAGTGGAGAGAGATAAGAGGAAGCGTCGAAGTGTGTACAGGGACACATACATTTCAAAACTTCTGTAACTTGCTTCAAATATTTTGGATTTTGTTGATTTTAARGCTATAAGAAAGCTCTGTTTTCCAGCTTTCTGTTAATATAAGTATTGATTGAAAATGTTCATGGTAAGTGGCTCAAAAACAGAAAATACTAACAATATCCCTTGTTCGAAACCTAGTCCTTGAGGCTCTCAGGGATTATATAGTAGACGTAGTTTTGTTTATTTAATTAATTTCCAAAAACTTAGAAAAAGTAAGATCCCATGGGCACTATTAGCAAAACTCTAAAACGAACTAAAGTTTCTAGGTAAATGATCTAACCGCTATCAAGGCAGATGCTCTTCACTACTTGCCCCTTTTCAGCTCAACTATCTCCATTACCGTAGAAGATATAAAAAAATCTGCAAACTGCAAAAATGTAGGTGATATTATGGCAAACATTTTATCAGTTGACAAATTTTTGATATCTCTTACAGGAATCGAGATAATTGAGCGCAAAGGGCGAGAACTTTGAACTCAAGTATCTCGGTTACTCTGAGAGAATTGAAAAAATTGTCAACTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>328 275 200 173 13 11</canonical_bands>
                <polymorphic_bands>339 275 200 173 13</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>210 200 175 173 90 54 46 28 13 11</canonical_bands>
                <polymorphic_bands>221 200 175 173 90 54 46 28 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAGTGGAGAGAGATAAGAGGA</pcr_primer_p1>
		<pcr_primer_p2>ACGTCTACTATATAATCCCTGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AGAAGTGGAGAGAGATAAGAGGAAGCGTCGAAGTGTGTACAGGGACACATACATTTCAAAACTTCTGTAACTTGCTTCAAATATTTTGGATTTTGTTGATTTTAAAGCTATAAGAAAGCTCTGTTTTCCAGCTTTCTGTTAATATAAGTATTGATTGAAAATGTTCATGGTAAGTGGCTCAAAAACAGAAAATACTAACAATATCCCTTGTTCGAAACCTAGTCCTTGAGGCTCTCAGGGATTATATAGTAGACGT</canonical_amplicon>
		<polymorphic_amplicon>AGAAGTGGAGAGAGATAAGAGGAAGCGTCGAAGTGTGTACAGGGACACATACATTTCAAAACTTCTGTAACTTGCTTCAAATATTTTGGATTTTGTTGATTTTAARGCTATAAGAAAGCTCTGTTTTCCAGCTTTCTGTTAATATAAGTATTGATTGAAAATGTTCATGGTAAGTGGCTCAAAAACAGAAAATACTAACAATATCCCTTGTTCGAAACCTAGTCCTTGAGGCTCTCAGGGATTATATAGTAGACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29804</snp_id>
        <super_contig>c004900897.Contig1</super_contig>
        <contig_pos>29397</contig_pos>
        <strand>+</strand>
        <context>TGATTTTAAR[A/G]CTATAAGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAAACTTCTGTAACTTGCTTCAAATATTTTGGATTTTGTTGATTTTAAA</left_flank>
        <right_flank>CTATAAGAAAGCTCTGTTTTCCAGCTTTCTGTTAATATAAGTATTGATTG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGACCAGTAGTTTTGCAGAAGGAGGTGGTCAACAAATTACAATGAGAACTTTGGCAACTTGATTTTTTCTAATTTTTGTCGTTTTATTTTGGTTTTTTTACAAAAATTTTCAGCATGTTTCTCAAGTTCCACTTTTTTCGCATAATTTTGTCAATTAATAAACTGCTTTAGCTTTCTGAATTCATTAAAAACCATTGATTACCATCACTAAATAATGCACAAAATAGCAAAAAAAGAAAAAAAATTTCGCTCCCGGGTGGGCTCGAACCACCAACCTTTCGGTTAACAGCCGAACGCGCTGCCTATTGCGCCACGGAAGCAGGCGAGAGAGGGAGGTGGGCAAGGCGTATATAAAAGAAGGGTCGGCGGAAGAGGCGCAGAGGCGCGAGGCAAGAAGTGGAGAGAGATAAGAGGAAGCGTCGAAGTGTGTACAGGGACACATACATTTCAAAACTTCTGTAACTTGCTTCAAATATTTTGGATTTTGTTGATTTTAAAGCTATAAGAAAGCTCTGTTTTCCAGCTTTCTGTTAATATAAGTATTGATTGAAAATGTTCATGGTAAGTGGCTCAAAAACAGAAAATACTAACAATATCCCTTGTTCGAAACCTAGTCCTTGAGGCTCTCAGGGATTATATAGTAGACGTAGTTTTGTTTATTTAATTAATTTCCAAAAACTTAGAAAAAGTAAGATCCCATGGGCACTATTAGCAAAACTCTAAAACGAACTAAAGTTTCTAGGTAAATGATCTAACCGCTATCAAGGCAGATGCTCTTCACTACTTGCCCCTTTTCAGCTCAACTATCTCCATTACCGTAGAAGATATAAAAAAATCTGCAAACTGCAAAAATGTAGGTGATATTATGGCAAACATTTTATCAGTTGACAAATTTTTGATATCTCTTACAGGAATCGAGATAATTGAGCGCAAAGGGCGAGAACTTTGAACTCAAGTATCTCGGTTACTCTGAGAGAATTGAAAAAATTGTCAACTGAT</canonical>
            <polymorphic>GAGACCAGTAGTTTTGCAGAAGGAGGTGGTCAACAAATTACAATGAGAACTTTGGCAACTTGATTTTTTCTAATTTTTGTCGTTTTATTTTGGTTTTTTTACAAAAATTTTCAGCATGTTTCTCAAGTTCCACTTTTTTCGCATAATTTTGTCAATTAATAAACTGCTTTAGCTTTCTGAATTCATTAAAAACCATTGATTACCATCACTAAATAATGCACAAAATAGCAAAAAAAGAAAAAAAATTTCGCTCCCGGGTGGGCTCGAACCACCAACCTTTCGGTTAACAGCCGAACGCGCTGCCTATTGCGCCACGGAAGCAGGCGAGAGAGGGAGGTGGGCAAGGCGTATATAAAAGAAGGGTCGGCGGAAGAGGCGCAGAGGCGCGAGGCAAGAAGTGGAGAGAGATAAGAGGAAGCGTCGAAGTGTGTACAGGGACACATACATTTCAAAACTTCTGTAACTTGCTTCAAATATTTTGGATTTTGTTGATTTTAAARCTATAAGAAAGCTCTGTTTTCCAGCTTTCTGTTAATATAAGTATTGATTGAAAATGTTCATGGTAAGTGGCTCAAAAACAGAAAATACTAACAATATCCCTTGTTCGAAACCTAGTCCTTGAGGCTCTCAGGGATTATATAGTAGACGTAGTTTTGTTTATTTAATTAATTTCCAAAAACTTAGAAAAAGTAAGATCCCATGGGCACTATTAGCAAAACTCTAAAACGAACTAAAGTTTCTAGGTAAATGATCTAACCGCTATCAAGGCAGATGCTCTTCACTACTTGCCCCTTTTCAGCTCAACTATCTCCATTACCGTAGAAGATATAAAAAAATCTGCAAACTGCAAAAATGTAGGTGATATTATGGCAAACATTTTATCAGTTGACAAATTTTTGATATCTCTTACAGGAATCGAGATAATTGAGCGCAAAGGGCGAGAACTTTGAACTCAAGTATCTCGGTTACTCTGAGAGAATTGAAAAAATTGTCAACTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>328 275 201 172 13 11</canonical_bands>
                <polymorphic_bands>339 275 201 172 13</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>210 201 175 172 90 54 46 28 13 11</canonical_bands>
                <polymorphic_bands>221 201 175 172 90 54 46 28 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAGTGGAGAGAGATAAGAGGA</pcr_primer_p1>
		<pcr_primer_p2>ACGTCTACTATATAATCCCTGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AGAAGTGGAGAGAGATAAGAGGAAGCGTCGAAGTGTGTACAGGGACACATACATTTCAAAACTTCTGTAACTTGCTTCAAATATTTTGGATTTTGTTGATTTTAAAGCTATAAGAAAGCTCTGTTTTCCAGCTTTCTGTTAATATAAGTATTGATTGAAAATGTTCATGGTAAGTGGCTCAAAAACAGAAAATACTAACAATATCCCTTGTTCGAAACCTAGTCCTTGAGGCTCTCAGGGATTATATAGTAGACGT</canonical_amplicon>
		<polymorphic_amplicon>AGAAGTGGAGAGAGATAAGAGGAAGCGTCGAAGTGTGTACAGGGACACATACATTTCAAAACTTCTGTAACTTGCTTCAAATATTTTGGATTTTGTTGATTTTAAARCTATAAGAAAGCTCTGTTTTCCAGCTTTCTGTTAATATAAGTATTGATTGAAAATGTTCATGGTAAGTGGCTCAAAAACAGAAAATACTAACAATATCCCTTGTTCGAAACCTAGTCCTTGAGGCTCTCAGGGATTATATAGTAGACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29805</snp_id>
        <super_contig>c004900897.Contig1</super_contig>
        <contig_pos>29467</contig_pos>
        <strand>+</strand>
        <context>ATGGTAAGTG[A/G]CTCAAAAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCAGCTTTCTGTTAATATAAGTATTGATTGAAAATGTTCATGGTAAGTG</left_flank>
        <right_flank>CTCAAAAACAGAAAATACTAACAATATCCCTTGTTCGAAACCTAGTCCTT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATTTTTGTCGTTTTATTTTGGTTTTTTTACAAAAATTTTCAGCATGTTTCTCAAGTTCCACTTTTTTCGCATAATTTTGTCAATTAATAAACTGCTTTAGCTTTCTGAATTCATTAAAAACCATTGATTACCATCACTAAATAATGCACAAAATAGCAAAAAAAGAAAAAAAATTTCGCTCCCGGGTGGGCTCGAACCACCAACCTTTCGGTTAACAGCCGAACGCGCTGCCTATTGCGCCACGGAAGCAGGCGAGAGAGGGAGGTGGGCAAGGCGTATATAAAAGAAGGGTCGGCGGAAGAGGCGCAGAGGCGCGAGGCAAGAAGTGGAGAGAGATAAGAGGAAGCGTCGAAGTGTGTACAGGGACACATACATTTCAAAACTTCTGTAACTTGCTTCAAATATTTTGGATTTTGTTGATTTTAAAGCTATAAGAAAGCTCTGTTTTCCAGCTTTCTGTTAATATAAGTATTGATTGAAAATGTTCATGGTAAGTGGCTCAAAAACAGAAAATACTAACAATATCCCTTGTTCGAAACCTAGTCCTTGAGGCTCTCAGGGATTATATAGTAGACGTAGTTTTGTTTATTTAATTAATTTCCAAAAACTTAGAAAAAGTAAGATCCCATGGGCACTATTAGCAAAACTCTAAAACGAACTAAAGTTTCTAGGTAAATGATCTAACCGCTATCAAGGCAGATGCTCTTCACTACTTGCCCCTTTTCAGCTCAACTATCTCCATTACCGTAGAAGATATAAAAAAATCTGCAAACTGCAAAAATGTAGGTGATATTATGGCAAACATTTTATCAGTTGACAAATTTTTGATATCTCTTACAGGAATCGAGATAATTGAGCGCAAAGGGCGAGAACTTTGAACTCAAGTATCTCGGTTACTCTGAGAGAATTGAAAAAATTGTCAACTGATAAAATGTAGAGAACATTATGAAAAACATTTTACCAGTTGATAACTTTTTGATATCTCTTAGAGGAATCGA</canonical>
            <polymorphic>TAATTTTTGTCGTTTTATTTTGGTTTTTTTACAAAAATTTTCAGCATGTTTCTCAAGTTCCACTTTTTTCGCATAATTTTGTCAATTAATAAACTGCTTTAGCTTTCTGAATTCATTAAAAACCATTGATTACCATCACTAAATAATGCACAAAATAGCAAAAAAAGAAAAAAAATTTCGCTCCCGGGTGGGCTCGAACCACCAACCTTTCGGTTAACAGCCGAACGCGCTGCCTATTGCGCCACGGAAGCAGGCGAGAGAGGGAGGTGGGCAAGGCGTATATAAAAGAAGGGTCGGCGGAAGAGGCGCAGAGGCGCGAGGCAAGAAGTGGAGAGAGATAAGAGGAAGCGTCGAAGTGTGTACAGGGACACATACATTTCAAAACTTCTGTAACTTGCTTCAAATATTTTGGATTTTGTTGATTTTAAAGCTATAAGAAAGCTCTGTTTTCCAGCTTTCTGTTAATATAAGTATTGATTGAAAATGTTCATGGTAAGTGRCTCAAAAACAGAAAATACTAACAATATCCCTTGTTCGAAACCTAGTCCTTGAGGCTCTCAGGGATTATATAGTAGACGTAGTTTTGTTTATTTAATTAATTTCCAAAAACTTAGAAAAAGTAAGATCCCATGGGCACTATTAGCAAAACTCTAAAACGAACTAAAGTTTCTAGGTAAATGATCTAACCGCTATCAAGGCAGATGCTCTTCACTACTTGCCCCTTTTCAGCTCAACTATCTCCATTACCGTAGAAGATATAAAAAAATCTGCAAACTGCAAAAATGTAGGTGATATTATGGCAAACATTTTATCAGTTGACAAATTTTTGATATCTCTTACAGGAATCGAGATAATTGAGCGCAAAGGGCGAGAACTTTGAACTCAAGTATCTCGGTTACTCTGAGAGAATTGAAAAAATTGTCAACTGATAAAATGTAGAGAACATTATGAAAAACATTTTACCAGTTGATAACTTTTTGATATCTCTTAGAGGAATCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>271 210 175 102 90 54 46 28 13 11</canonical_bands>
                <polymorphic_bands>271 210 175 102 100 90 28 13 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACTTCTGTAACTTGCTTCAA</pcr_primer_p1>
		<pcr_primer_p2>TGGGATCTTACTTTTTCTAAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAACTTCTGTAACTTGCTTCAAATATTTTGGATTTTGTTGATTTTAAAGCTATAAGAAAGCTCTGTTTTCCAGCTTTCTGTTAATATAAGTATTGATTGAAAATGTTCATGGTAAGTGGCTCAAAAACAGAAAATACTAACAATATCCCTTGTTCGAAACCTAGTCCTTGAGGCTCTCAGGGATTATATAGTAGACGTAGTTTTGTTTATTTAATTAATTTCCAAAAACTTAGAAAAAGTAAGATCCCA</canonical_amplicon>
		<polymorphic_amplicon>AAAACTTCTGTAACTTGCTTCAAATATTTTGGATTTTGTTGATTTTAAAGCTATAAGAAAGCTCTGTTTTCCAGCTTTCTGTTAATATAAGTATTGATTGAAAATGTTCATGGTAAGTGRCTCAAAAACAGAAAATACTAACAATATCCCTTGTTCGAAACCTAGTCCTTGAGGCTCTCAGGGATTATATAGTAGACGTAGTTTTGTTTATTTAATTAATTTCCAAAAACTTAGAAAAAGTAAGATCCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29806</snp_id>
        <super_contig>c004900897.Contig1</super_contig>
        <contig_pos>29674</contig_pos>
        <strand>+</strand>
        <context>GGCAGATGCT[A/C]TTCACTACTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGAACTAAAGTTTCTAGGTAAATGATCTAACCGCTATCAAGGCAGATGCT</left_flank>
        <right_flank>TTCACTACTTGCCCCTTTTCAGCTCAACTATCTCCATTACCGTAGAAGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGGTTAACAGCCGAACGCGCTGCCTATTGCGCCACGGAAGCAGGCGAGAGAGGGAGGTGGGCAAGGCGTATATAAAAGAAGGGTCGGCGGAAGAGGCGCAGAGGCGCGAGGCAAGAAGTGGAGAGAGATAAGAGGAAGCGTCGAAGTGTGTACAGGGACACATACATTTCAAAACTTCTGTAACTTGCTTCAAATATTTTGGATTTTGTTGATTTTAAAGCTATAAGAAAGCTCTGTTTTCCAGCTTTCTGTTAATATAAGTATTGATTGAAAATGTTCATGGTAAGTGGCTCAAAAACAGAAAATACTAACAATATCCCTTGTTCGAAACCTAGTCCTTGAGGCTCTCAGGGATTATATAGTAGACGTAGTTTTGTTTATTTAATTAATTTCCAAAAACTTAGAAAAAGTAAGATCCCATGGGCACTATTAGCAAAACTCTAAAACGAACTAAAGTTTCTAGGTAAATGATCTAACCGCTATCAAGGCAGATGCTCTTCACTACTTGCCCCTTTTCAGCTCAACTATCTCCATTACCGTAGAAGATATAAAAAAATCTGCAAACTGCAAAAATGTAGGTGATATTATGGCAAACATTTTATCAGTTGACAAATTTTTGATATCTCTTACAGGAATCGAGATAATTGAGCGCAAAGGGCGAGAACTTTGAACTCAAGTATCTCGGTTACTCTGAGAGAATTGAAAAAATTGTCAACTGATAAAATGTAGAGAACATTATGAAAAACATTTTACCAGTTGATAACTTTTTGATATCTCTTAGAGGAATCGAGATAATCGAACTCAAAGTGCACGTATTGTATGGAGGTTGAAAATAGAGCATTTATGGTACTATTGAGGTATAAAGATGTTCAGAAAAACAAATGAAAAAAATAGAACAGGTCATTTATTATCCATTCGATGAGTGATAGTAACTGGAAATCCTAGCGAACTCTTCATAATGATTTCCGGAAGAATTTTATTGTCTTCAAATGCCACG</canonical>
            <polymorphic>TTTCGGTTAACAGCCGAACGCGCTGCCTATTGCGCCACGGAAGCAGGCGAGAGAGGGAGGTGGGCAAGGCGTATATAAAAGAAGGGTCGGCGGAAGAGGCGCAGAGGCGCGAGGCAAGAAGTGGAGAGAGATAAGAGGAAGCGTCGAAGTGTGTACAGGGACACATACATTTCAAAACTTCTGTAACTTGCTTCAAATATTTTGGATTTTGTTGATTTTAAAGCTATAAGAAAGCTCTGTTTTCCAGCTTTCTGTTAATATAAGTATTGATTGAAAATGTTCATGGTAAGTGGCTCAAAAACAGAAAATACTAACAATATCCCTTGTTCGAAACCTAGTCCTTGAGGCTCTCAGGGATTATATAGTAGACGTAGTTTTGTTTATTTAATTAATTTCCAAAAACTTAGAAAAAGTAAGATCCCATGGGCACTATTAGCAAAACTCTAAAACGAACTAAAGTTTCTAGGTAAATGATCTAACCGCTATCAAGGCAGATGCTMTTCACTACTTGCCCCTTTTCAGCTCAACTATCTCCATTACCGTAGAAGATATAAAAAAATCTGCAAACTGCAAAAATGTAGGTGATATTATGGCAAACATTTTATCAGTTGACAAATTTTTGATATCTCTTACAGGAATCGAGATAATTGAGCGCAAAGGGCGAGAACTTTGAACTCAAGTATCTCGGTTACTCTGAGAGAATTGAAAAAATTGTCAACTGATAAAATGTAGAGAACATTATGAAAAACATTTTACCAGTTGATAACTTTTTGATATCTCTTAGAGGAATCGAGATAATCGAACTCAAAGTGCACGTATTGTATGGAGGTTGAAAATAGAGCATTTATGGTACTATTGAGGTATAAAGATGTTCAGAAAAACAAATGAAAAAAATAGAACAGGTCATTTATTATCCATTCGATGAGTGATAGTAACTGGAAATCCTAGCGAACTCTTCATAATGATTTCCGGAAGAATTTTATTGTCTTCAAATGCCACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACGAACTAAAGTTTCTAGGTAA</pcr_primer_p1>
		<pcr_primer_p2>TTTCAACCTCCATACAATACG</pcr_primer_p2>
		<pcr_amplicon_size>390</pcr_amplicon_size>
		<canonical_amplicon>AAAACGAACTAAAGTTTCTAGGTAAATGATCTAACCGCTATCAAGGCAGATGCTCTTCACTACTTGCCCCTTTTCAGCTCAACTATCTCCATTACCGTAGAAGATATAAAAAAATCTGCAAACTGCAAAAATGTAGGTGATATTATGGCAAACATTTTATCAGTTGACAAATTTTTGATATCTCTTACAGGAATCGAGATAATTGAGCGCAAAGGGCGAGAACTTTGAACTCAAGTATCTCGGTTACTCTGAGAGAATTGAAAAAATTGTCAACTGATAAAATGTAGAGAACATTATGAAAAACATTTTACCAGTTGATAACTTTTTGATATCTCTTAGAGGAATCGAGATAATCGAACTCAAAGTGCACGTATTGTATGGAGGTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAACGAACTAAAGTTTCTAGGTAAATGATCTAACCGCTATCAAGGCAGATGCTMTTCACTACTTGCCCCTTTTCAGCTCAACTATCTCCATTACCGTAGAAGATATAAAAAAATCTGCAAACTGCAAAAATGTAGGTGATATTATGGCAAACATTTTATCAGTTGACAAATTTTTGATATCTCTTACAGGAATCGAGATAATTGAGCGCAAAGGGCGAGAACTTTGAACTCAAGTATCTCGGTTACTCTGAGAGAATTGAAAAAATTGTCAACTGATAAAATGTAGAGAACATTATGAAAAACATTTTACCAGTTGATAACTTTTTGATATCTCTTAGAGGAATCGAGATAATCGAACTCAAAGTGCACGTATTGTATGGAGGTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29807</snp_id>
        <super_contig>c004900897.Contig1</super_contig>
        <contig_pos>29834</contig_pos>
        <strand>+</strand>
        <context>gagcgcaaag[G/T]GCGAGaactt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGACAAATTTTTGATATCTCTTACAGGAATCGAGATAATTGAGCGCAAAG</left_flank>
        <right_flank>GCGAGAACTTTGAACTCAAGTATCTCGGTTACTCTGAGAGAATTGAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACATACATTTCAAAACTTCTGTAACTTGCTTCAAATATTTTGGATTTTGTTGATTTTAAAGCTATAAGAAAGCTCTGTTTTCCAGCTTTCTGTTAATATAAGTATTGATTGAAAATGTTCATGGTAAGTGGCTCAAAAACAGAAAATACTAACAATATCCCTTGTTCGAAACCTAGTCCTTGAGGCTCTCAGGGATTATATAGTAGACGTAGTTTTGTTTATTTAATTAATTTCCAAAAACTTAGAAAAAGTAAGATCCCATGGGCACTATTAGCAAAACTCTAAAACGAACTAAAGTTTCTAGGTAAATGATCTAACCGCTATCAAGGCAGATGCTCTTCACTACTTGCCCCTTTTCAGCTCAACTATCTCCATTACCGTAGAAGATATAAAAAAATCTGCAAACTGCAAAAATGTAGGTGATATTATGGCAAACATTTTATCAGTTGACAAATTTTTGATATCTCTTACAGGAATCGAGATAATTGAGCGCAAAGGGCGAGAACTTTGAACTCAAGTATCTCGGTTACTCTGAGAGAATTGAAAAAATTGTCAACTGATAAAATGTAGAGAACATTATGAAAAACATTTTACCAGTTGATAACTTTTTGATATCTCTTAGAGGAATCGAGATAATCGAACTCAAAGTGCACGTATTGTATGGAGGTTGAAAATAGAGCATTTATGGTACTATTGAGGTATAAAGATGTTCAGAAAAACAAATGAAAAAAATAGAACAGGTCATTTATTATCCATTCGATGAGTGATAGTAACTGGAAATCCTAGCGAACTCTTCATAATGATTTCCGGAAGAATTTTATTGTCTTCAAATGCCACGTTGGCACTGATACGGTACTTCCGGAAGAACCATGAGATCACTGTTTTCTCTTCCATCATTGCAAATTTCTGACCAATACAATTCCGTGGTCCCGCAGAGAATGGAACATCTGAATAGGCGTGACGACTGCTCATTTTTTCTTCGGAAAAATTTTCGGGAT</canonical>
            <polymorphic>ACACATACATTTCAAAACTTCTGTAACTTGCTTCAAATATTTTGGATTTTGTTGATTTTAAAGCTATAAGAAAGCTCTGTTTTCCAGCTTTCTGTTAATATAAGTATTGATTGAAAATGTTCATGGTAAGTGGCTCAAAAACAGAAAATACTAACAATATCCCTTGTTCGAAACCTAGTCCTTGAGGCTCTCAGGGATTATATAGTAGACGTAGTTTTGTTTATTTAATTAATTTCCAAAAACTTAGAAAAAGTAAGATCCCATGGGCACTATTAGCAAAACTCTAAAACGAACTAAAGTTTCTAGGTAAATGATCTAACCGCTATCAAGGCAGATGCTCTTCACTACTTGCCCCTTTTCAGCTCAACTATCTCCATTACCGTAGAAGATATAAAAAAATCTGCAAACTGCAAAAATGTAGGTGATATTATGGCAAACATTTTATCAGTTGACAAATTTTTGATATCTCTTACAGGAATCGAGATAATTGAGCGCAAAGKGCGAGAACTTTGAACTCAAGTATCTCGGTTACTCTGAGAGAATTGAAAAAATTGTCAACTGATAAAATGTAGAGAACATTATGAAAAACATTTTACCAGTTGATAACTTTTTGATATCTCTTAGAGGAATCGAGATAATCGAACTCAAAGTGCACGTATTGTATGGAGGTTGAAAATAGAGCATTTATGGTACTATTGAGGTATAAAGATGTTCAGAAAAACAAATGAAAAAAATAGAACAGGTCATTTATTATCCATTCGATGAGTGATAGTAACTGGAAATCCTAGCGAACTCTTCATAATGATTTCCGGAAGAATTTTATTGTCTTCAAATGCCACGTTGGCACTGATACGGTACTTCCGGAAGAACCATGAGATCACTGTTTTCTCTTCCATCATTGCAAATTTCTGACCAATACAATTCCGTGGTCCCGCAGAGAATGGAACATCTGAATAGGCGTGACGACTGCTCATTTTTTCTTCGGAAAAATTTTCGGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATGATCTAACCGCTATCAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTCAACCTCCATACAATACG</pcr_primer_p2>
		<pcr_amplicon_size>368</pcr_amplicon_size>
		<canonical_amplicon>TAAATGATCTAACCGCTATCAAGGCAGATGCTCTTCACTACTTGCCCCTTTTCAGCTCAACTATCTCCATTACCGTAGAAGATATAAAAAAATCTGCAAACTGCAAAAATGTAGGTGATATTATGGCAAACATTTTATCAGTTGACAAATTTTTGATATCTCTTACAGGAATCGAGATAATTGAGCGCAAAGGGCGAGAACTTTGAACTCAAGTATCTCGGTTACTCTGAGAGAATTGAAAAAATTGTCAACTGATAAAATGTAGAGAACATTATGAAAAACATTTTACCAGTTGATAACTTTTTGATATCTCTTAGAGGAATCGAGATAATCGAACTCAAAGTGCACGTATTGTATGGAGGTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>TAAATGATCTAACCGCTATCAAGGCAGATGCTCTTCACTACTTGCCCCTTTTCAGCTCAACTATCTCCATTACCGTAGAAGATATAAAAAAATCTGCAAACTGCAAAAATGTAGGTGATATTATGGCAAACATTTTATCAGTTGACAAATTTTTGATATCTCTTACAGGAATCGAGATAATTGAGCGCAAAGKGCGAGAACTTTGAACTCAAGTATCTCGGTTACTCTGAGAGAATTGAAAAAATTGTCAACTGATAAAATGTAGAGAACATTATGAAAAACATTTTACCAGTTGATAACTTTTTGATATCTCTTAGAGGAATCGAGATAATCGAACTCAAAGTGCACGTATTGTATGGAGGTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29808</snp_id>
        <super_contig>c004900897.Contig1</super_contig>
        <contig_pos>29890</contig_pos>
        <strand></strand>
        <context>aaaaaattgt[C/T]aactgataaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACTTTGAACTCAAGTATCTCGGTTACTCTGAGAGAATTGAAAAAATTGT</left_flank>
        <right_flank>AACTGATAAAATGTAGAGAACATTATGAAAAACATTTTACCAGTTGATAA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAAAGCTATAAGAAAGCTCTGTTTTCCAGCTTTCTGTTAATATAAGTATTGATTGAAAATGTTCATGGTAAGTGGCTCAAAAACAGAAAATACTAACAATATCCCTTGTTCGAAACCTAGTCCTTGAGGCTCTCAGGGATTATATAGTAGACGTAGTTTTGTTTATTTAATTAATTTCCAAAAACTTAGAAAAAGTAAGATCCCATGGGCACTATTAGCAAAACTCTAAAACGAACTAAAGTTTCTAGGTAAATGATCTAACCGCTATCAAGGCAGATGCTCTTCACTACTTGCCCCTTTTCAGCTCAACTATCTCCATTACCGTAGAAGATATAAAAAAATCTGCAAACTGCAAAAATGTAGGTGATATTATGGCAAACATTTTATCAGTTGACAAATTTTTGATATCTCTTACAGGAATCGAGATAATTGAGCGCAAAGGGCGAGAACTTTGAACTCAAGTATCTCGGTTACTCTGAGAGAATTGAAAAAATTGTCAACTGATAAAATGTAGAGAACATTATGAAAAACATTTTACCAGTTGATAACTTTTTGATATCTCTTAGAGGAATCGAGATAATCGAACTCAAAGTGCACGTATTGTATGGAGGTTGAAAATAGAGCATTTATGGTACTATTGAGGTATAAAGATGTTCAGAAAAACAAATGAAAAAAATAGAACAGGTCATTTATTATCCATTCGATGAGTGATAGTAACTGGAAATCCTAGCGAACTCTTCATAATGATTTCCGGAAGAATTTTATTGTCTTCAAATGCCACGTTGGCACTGATACGGTACTTCCGGAAGAACCATGAGATCACTGTTTTCTCTTCCATCATTGCAAATTTCTGACCAATACAATTCCGTGGTCCCGCAGAGAATGGAACATCTGAATAGGCGTGACGACTGCTCATTTTTTCTTCGGAAAAATTTTCGGGATCATAGACGTTTGGATTTTCAAAGAGAAGTGGATTTCGTTGTAGGACCAGAGGGACC</canonical>
            <polymorphic>TTTAAAGCTATAAGAAAGCTCTGTTTTCCAGCTTTCTGTTAATATAAGTATTGATTGAAAATGTTCATGGTAAGTGGCTCAAAAACAGAAAATACTAACAATATCCCTTGTTCGAAACCTAGTCCTTGAGGCTCTCAGGGATTATATAGTAGACGTAGTTTTGTTTATTTAATTAATTTCCAAAAACTTAGAAAAAGTAAGATCCCATGGGCACTATTAGCAAAACTCTAAAACGAACTAAAGTTTCTAGGTAAATGATCTAACCGCTATCAAGGCAGATGCTCTTCACTACTTGCCCCTTTTCAGCTCAACTATCTCCATTACCGTAGAAGATATAAAAAAATCTGCAAACTGCAAAAATGTAGGTGATATTATGGCAAACATTTTATCAGTTGACAAATTTTTGATATCTCTTACAGGAATCGAGATAATTGAGCGCAAAGGGCGAGAACTTTGAACTCAAGTATCTCGGTTACTCTGAGAGAATTGAAAAAATTGTYAACTGATAAAATGTAGAGAACATTATGAAAAACATTTTACCAGTTGATAACTTTTTGATATCTCTTAGAGGAATCGAGATAATCGAACTCAAAGTGCACGTATTGTATGGAGGTTGAAAATAGAGCATTTATGGTACTATTGAGGTATAAAGATGTTCAGAAAAACAAATGAAAAAAATAGAACAGGTCATTTATTATCCATTCGATGAGTGATAGTAACTGGAAATCCTAGCGAACTCTTCATAATGATTTCCGGAAGAATTTTATTGTCTTCAAATGCCACGTTGGCACTGATACGGTACTTCCGGAAGAACCATGAGATCACTGTTTTCTCTTCCATCATTGCAAATTTCTGACCAATACAATTCCGTGGTCCCGCAGAGAATGGAACATCTGAATAGGCGTGACGACTGCTCATTTTTTCTTCGGAAAAATTTTCGGGATCATAGACGTTTGGATTTTCAAAGAGAAGTGGATTTCGTTGTAGGACCAGAGGGACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>500 394 106</canonical_bands>
                <polymorphic_bands>606 394</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAATGATCTAACCGCTATCAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTCAACCTCCATACAATACG</pcr_primer_p2>
		<pcr_amplicon_size>368</pcr_amplicon_size>
		<canonical_amplicon>TAAATGATCTAACCGCTATCAAGGCAGATGCTCTTCACTACTTGCCCCTTTTCAGCTCAACTATCTCCATTACCGTAGAAGATATAAAAAAATCTGCAAACTGCAAAAATGTAGGTGATATTATGGCAAACATTTTATCAGTTGACAAATTTTTGATATCTCTTACAGGAATCGAGATAATTGAGCGCAAAGGGCGAGAACTTTGAACTCAAGTATCTCGGTTACTCTGAGAGAATTGAAAAAATTGTCAACTGATAAAATGTAGAGAACATTATGAAAAACATTTTACCAGTTGATAACTTTTTGATATCTCTTAGAGGAATCGAGATAATCGAACTCAAAGTGCACGTATTGTATGGAGGTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>TAAATGATCTAACCGCTATCAAGGCAGATGCTCTTCACTACTTGCCCCTTTTCAGCTCAACTATCTCCATTACCGTAGAAGATATAAAAAAATCTGCAAACTGCAAAAATGTAGGTGATATTATGGCAAACATTTTATCAGTTGACAAATTTTTGATATCTCTTACAGGAATCGAGATAATTGAGCGCAAAGGGCGAGAACTTTGAACTCAAGTATCTCGGTTACTCTGAGAGAATTGAAAAAATTGTYAACTGATAAAATGTAGAGAACATTATGAAAAACATTTTACCAGTTGATAACTTTTTGATATCTCTTAGAGGAATCGAGATAATCGAACTCAAAGTGCACGTATTGTATGGAGGTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29809</snp_id>
        <super_contig>c004900897.Contig1</super_contig>
        <contig_pos>29911</contig_pos>
        <strand></strand>
        <context>atgtagagaa[C/A]attatgaaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GGTTACTCTGAGAGAATTGAAAAAATTGTCAACTGATAAAATGTAGAGAA</left_flank>
        <right_flank>ATTATGAAAAACATTTTACCAGTTGATAACTTTTTGATATCTCTTAGAGG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTTCCAGCTTTCTGTTAATATAAGTATTGATTGAAAATGTTCATGGTAAGTGGCTCAAAAACAGAAAATACTAACAATATCCCTTGTTCGAAACCTAGTCCTTGAGGCTCTCAGGGATTATATAGTAGACGTAGTTTTGTTTATTTAATTAATTTCCAAAAACTTAGAAAAAGTAAGATCCCATGGGCACTATTAGCAAAACTCTAAAACGAACTAAAGTTTCTAGGTAAATGATCTAACCGCTATCAAGGCAGATGCTCTTCACTACTTGCCCCTTTTCAGCTCAACTATCTCCATTACCGTAGAAGATATAAAAAAATCTGCAAACTGCAAAAATGTAGGTGATATTATGGCAAACATTTTATCAGTTGACAAATTTTTGATATCTCTTACAGGAATCGAGATAATTGAGCGCAAAGGGCGAGAACTTTGAACTCAAGTATCTCGGTTACTCTGAGAGAATTGAAAAAATTGTCAACTGATAAAATGTAGAGAACATTATGAAAAACATTTTACCAGTTGATAACTTTTTGATATCTCTTAGAGGAATCGAGATAATCGAACTCAAAGTGCACGTATTGTATGGAGGTTGAAAATAGAGCATTTATGGTACTATTGAGGTATAAAGATGTTCAGAAAAACAAATGAAAAAAATAGAACAGGTCATTTATTATCCATTCGATGAGTGATAGTAACTGGAAATCCTAGCGAACTCTTCATAATGATTTCCGGAAGAATTTTATTGTCTTCAAATGCCACGTTGGCACTGATACGGTACTTCCGGAAGAACCATGAGATCACTGTTTTCTCTTCCATCATTGCAAATTTCTGACCAATACAATTCCGTGGTCCCGCAGAGAATGGAACATCTGAATAGGCGTGACGACTGCTCATTTTTTCTTCGGAAAAATTTTCGGGATCATAGACGTTTGGATTTTCAAAGAGAAGTGGATTTCGTTGTAGGACCAGAGGGACCAGGATGATACGGACTCCTTTT</canonical>
            <polymorphic>TGTTTTCCAGCTTTCTGTTAATATAAGTATTGATTGAAAATGTTCATGGTAAGTGGCTCAAAAACAGAAAATACTAACAATATCCCTTGTTCGAAACCTAGTCCTTGAGGCTCTCAGGGATTATATAGTAGACGTAGTTTTGTTTATTTAATTAATTTCCAAAAACTTAGAAAAAGTAAGATCCCATGGGCACTATTAGCAAAACTCTAAAACGAACTAAAGTTTCTAGGTAAATGATCTAACCGCTATCAAGGCAGATGCTCTTCACTACTTGCCCCTTTTCAGCTCAACTATCTCCATTACCGTAGAAGATATAAAAAAATCTGCAAACTGCAAAAATGTAGGTGATATTATGGCAAACATTTTATCAGTTGACAAATTTTTGATATCTCTTACAGGAATCGAGATAATTGAGCGCAAAGGGCGAGAACTTTGAACTCAAGTATCTCGGTTACTCTGAGAGAATTGAAAAAATTGTCAACTGATAAAATGTAGAGAAMATTATGAAAAACATTTTACCAGTTGATAACTTTTTGATATCTCTTAGAGGAATCGAGATAATCGAACTCAAAGTGCACGTATTGTATGGAGGTTGAAAATAGAGCATTTATGGTACTATTGAGGTATAAAGATGTTCAGAAAAACAAATGAAAAAAATAGAACAGGTCATTTATTATCCATTCGATGAGTGATAGTAACTGGAAATCCTAGCGAACTCTTCATAATGATTTCCGGAAGAATTTTATTGTCTTCAAATGCCACGTTGGCACTGATACGGTACTTCCGGAAGAACCATGAGATCACTGTTTTCTCTTCCATCATTGCAAATTTCTGACCAATACAATTCCGTGGTCCCGCAGAGAATGGAACATCTGAATAGGCGTGACGACTGCTCATTTTTTCTTCGGAAAAATTTTCGGGATCATAGACGTTTGGATTTTCAAAGAGAAGTGGATTTCGTTGTAGGACCAGAGGGACCAGGATGATACGGACTCCTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATGATCTAACCGCTATCAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTCAACCTCCATACAATACG</pcr_primer_p2>
		<pcr_amplicon_size>368</pcr_amplicon_size>
		<canonical_amplicon>TAAATGATCTAACCGCTATCAAGGCAGATGCTCTTCACTACTTGCCCCTTTTCAGCTCAACTATCTCCATTACCGTAGAAGATATAAAAAAATCTGCAAACTGCAAAAATGTAGGTGATATTATGGCAAACATTTTATCAGTTGACAAATTTTTGATATCTCTTACAGGAATCGAGATAATTGAGCGCAAAGGGCGAGAACTTTGAACTCAAGTATCTCGGTTACTCTGAGAGAATTGAAAAAATTGTCAACTGATAAAATGTAGAGAACATTATGAAAAACATTTTACCAGTTGATAACTTTTTGATATCTCTTAGAGGAATCGAGATAATCGAACTCAAAGTGCACGTATTGTATGGAGGTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>TAAATGATCTAACCGCTATCAAGGCAGATGCTCTTCACTACTTGCCCCTTTTCAGCTCAACTATCTCCATTACCGTAGAAGATATAAAAAAATCTGCAAACTGCAAAAATGTAGGTGATATTATGGCAAACATTTTATCAGTTGACAAATTTTTGATATCTCTTACAGGAATCGAGATAATTGAGCGCAAAGGGCGAGAACTTTGAACTCAAGTATCTCGGTTACTCTGAGAGAATTGAAAAAATTGTCAACTGATAAAATGTAGAGAAMATTATGAAAAACATTTTACCAGTTGATAACTTTTTGATATCTCTTAGAGGAATCGAGATAATCGAACTCAAAGTGCACGTATTGTATGGAGGTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29810</snp_id>
        <super_contig>c004900897.Contig1</super_contig>
        <contig_pos>29954</contig_pos>
        <strand></strand>
        <context>tttgatatct[C/T]ttagaggaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGAGAACATTATGAAAAACATTTTACCAGTTGATAACTTTTTGATATCT</left_flank>
        <right_flank>TTAGAGGAATCGAGATAATCGAACTCAAAGTGCACGTATTGTATGGAGGT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATGGTAAGTGGCTCAAAAACAGAAAATACTAACAATATCCCTTGTTCGAAACCTAGTCCTTGAGGCTCTCAGGGATTATATAGTAGACGTAGTTTTGTTTATTTAATTAATTTCCAAAAACTTAGAAAAAGTAAGATCCCATGGGCACTATTAGCAAAACTCTAAAACGAACTAAAGTTTCTAGGTAAATGATCTAACCGCTATCAAGGCAGATGCTCTTCACTACTTGCCCCTTTTCAGCTCAACTATCTCCATTACCGTAGAAGATATAAAAAAATCTGCAAACTGCAAAAATGTAGGTGATATTATGGCAAACATTTTATCAGTTGACAAATTTTTGATATCTCTTACAGGAATCGAGATAATTGAGCGCAAAGGGCGAGAACTTTGAACTCAAGTATCTCGGTTACTCTGAGAGAATTGAAAAAATTGTCAACTGATAAAATGTAGAGAACATTATGAAAAACATTTTACCAGTTGATAACTTTTTGATATCTCTTAGAGGAATCGAGATAATCGAACTCAAAGTGCACGTATTGTATGGAGGTTGAAAATAGAGCATTTATGGTACTATTGAGGTATAAAGATGTTCAGAAAAACAAATGAAAAAAATAGAACAGGTCATTTATTATCCATTCGATGAGTGATAGTAACTGGAAATCCTAGCGAACTCTTCATAATGATTTCCGGAAGAATTTTATTGTCTTCAAATGCCACGTTGGCACTGATACGGTACTTCCGGAAGAACCATGAGATCACTGTTTTCTCTTCCATCATTGCAAATTTCTGACCAATACAATTCCGTGGTCCCGCAGAGAATGGAACATCTGAATAGGCGTGACGACTGCTCATTTTTTCTTCGGAAAAATTTTCGGGATCATAGACGTTTGGATTTTCAAAGAGAAGTGGATTTCGTTGTAGGACCAGAGGGACCAGGATGATACGGACTCCTTTTGGGAGGAAATTTCCGTCTGGCAAATTTTAGATTTTCCAATTTT</canonical>
            <polymorphic>TCATGGTAAGTGGCTCAAAAACAGAAAATACTAACAATATCCCTTGTTCGAAACCTAGTCCTTGAGGCTCTCAGGGATTATATAGTAGACGTAGTTTTGTTTATTTAATTAATTTCCAAAAACTTAGAAAAAGTAAGATCCCATGGGCACTATTAGCAAAACTCTAAAACGAACTAAAGTTTCTAGGTAAATGATCTAACCGCTATCAAGGCAGATGCTCTTCACTACTTGCCCCTTTTCAGCTCAACTATCTCCATTACCGTAGAAGATATAAAAAAATCTGCAAACTGCAAAAATGTAGGTGATATTATGGCAAACATTTTATCAGTTGACAAATTTTTGATATCTCTTACAGGAATCGAGATAATTGAGCGCAAAGGGCGAGAACTTTGAACTCAAGTATCTCGGTTACTCTGAGAGAATTGAAAAAATTGTCAACTGATAAAATGTAGAGAACATTATGAAAAACATTTTACCAGTTGATAACTTTTTGATATCTYTTAGAGGAATCGAGATAATCGAACTCAAAGTGCACGTATTGTATGGAGGTTGAAAATAGAGCATTTATGGTACTATTGAGGTATAAAGATGTTCAGAAAAACAAATGAAAAAAATAGAACAGGTCATTTATTATCCATTCGATGAGTGATAGTAACTGGAAATCCTAGCGAACTCTTCATAATGATTTCCGGAAGAATTTTATTGTCTTCAAATGCCACGTTGGCACTGATACGGTACTTCCGGAAGAACCATGAGATCACTGTTTTCTCTTCCATCATTGCAAATTTCTGACCAATACAATTCCGTGGTCCCGCAGAGAATGGAACATCTGAATAGGCGTGACGACTGCTCATTTTTTCTTCGGAAAAATTTTCGGGATCATAGACGTTTGGATTTTCAAAGAGAAGTGGATTTCGTTGTAGGACCAGAGGGACCAGGATGATACGGACTCCTTTTGGGAGGAAATTTCCGTCTGGCAAATTTTAGATTTTCCAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 291 86 70 53</canonical_bands>
                <polymorphic_bands>586 291 70 53</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAATGATCTAACCGCTATCAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTCAACCTCCATACAATACG</pcr_primer_p2>
		<pcr_amplicon_size>368</pcr_amplicon_size>
		<canonical_amplicon>TAAATGATCTAACCGCTATCAAGGCAGATGCTCTTCACTACTTGCCCCTTTTCAGCTCAACTATCTCCATTACCGTAGAAGATATAAAAAAATCTGCAAACTGCAAAAATGTAGGTGATATTATGGCAAACATTTTATCAGTTGACAAATTTTTGATATCTCTTACAGGAATCGAGATAATTGAGCGCAAAGGGCGAGAACTTTGAACTCAAGTATCTCGGTTACTCTGAGAGAATTGAAAAAATTGTCAACTGATAAAATGTAGAGAACATTATGAAAAACATTTTACCAGTTGATAACTTTTTGATATCTCTTAGAGGAATCGAGATAATCGAACTCAAAGTGCACGTATTGTATGGAGGTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>TAAATGATCTAACCGCTATCAAGGCAGATGCTCTTCACTACTTGCCCCTTTTCAGCTCAACTATCTCCATTACCGTAGAAGATATAAAAAAATCTGCAAACTGCAAAAATGTAGGTGATATTATGGCAAACATTTTATCAGTTGACAAATTTTTGATATCTCTTACAGGAATCGAGATAATTGAGCGCAAAGGGCGAGAACTTTGAACTCAAGTATCTCGGTTACTCTGAGAGAATTGAAAAAATTGTCAACTGATAAAATGTAGAGAACATTATGAAAAACATTTTACCAGTTGATAACTTTTTGATATCTYTTAGAGGAATCGAGATAATCGAACTCAAAGTGCACGTATTGTATGGAGGTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29811</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>3993</contig_pos>
        <strand></strand>
        <context>actgtttcaa[A/G]tttgaaatga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGAACCAGAGTCAAAAGAAAAAATTCAAAACTAGGCCACACTGTTTCAA</left_flank>
        <right_flank>TTTGAAATGATCATAACTTGGCTCAAATGGAAGATTTTTGAAATCTGAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCTAAATAGCATCAAACTTTTCTGTTTTGGGAACGCCTTCGTCAGGTTTTTCTGAAAAAAAAGGAAGAGATGCAGTATCGCTGCTTAGAGAACATCTGGCAATTCAACAATCCGAGAAGAACCAGACTTGCATCGGTTGATCTGATTGGTTTGATGTAGTAATTGCTTTATTGAAAGCTGCTCACCCCGTTTGAGAAAGATTTCTTCTTTTTTGGTTAAAAATATGGAATCTATTGTTAGCTCCCAAGTCTCCTTGTATATTTTTTTTTCTAATTTATGAATTTTTTGAAATCTCATCCTTTAATTCCTATGAAAATTGTTTTTATTGATTTTGAATAAACAGTGAATGGTTATTTTCATACATGTTCCTACTGAAGTGAGTCTCGATCAAACCTGCTCACCTGGCCACGAACACCTGCCCACGCCCACCCTATGGTATATAAACTCGCAGAACCAGAGTCAAAAGAAAAAATTCAAAACTAGGCCACACTGTTTCAAATTTGAAATGATCATAACTTGGCTCAAATGGAAGATTTTTGAAATCTGAAACTAACCATATATATTATGACCTAGTTTTCTGAAATGTTGGTTTTCTAGGCCACCAATCTTCAAGTGGTCATATCTGGTTTCTTAATTGATATTTTAAAGTTTTGAAAGCTGCAGTGACATTTGCGAGATGCACAAATTTCAAAAAAAATGAATTATTAAACTTCTCAAATGAATCATAAATGTAGGTTAAAAACATAAAACATAATAATTTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAGAAAAAAAATTTCAGAACAAACGCAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGATGGAAAACGGGAAACTCCAGGAATAAATGTGAGTGGATTACTGTAGTT</canonical>
            <polymorphic>GTCTAAATAGCATCAAACTTTTCTGTTTTGGGAACGCCTTCGTCAGGTTTTTCTGAAAAAAAAGGAAGAGATGCAGTATCGCTGCTTAGAGAACATCTGGCAATTCAACAATCCGAGAAGAACCAGACTTGCATCGGTTGATCTGATTGGTTTGATGTAGTAATTGCTTTATTGAAAGCTGCTCACCCCGTTTGAGAAAGATTTCTTCTTTTTTGGTTAAAAATATGGAATCTATTGTTAGCTCCCAAGTCTCCTTGTATATTTTTTTTTCTAATTTATGAATTTTTTGAAATCTCATCCTTTAATTCCTATGAAAATTGTTTTTATTGATTTTGAATAAACAGTGAATGGTTATTTTCATACATGTTCCTACTGAAGTGAGTCTCGATCAAACCTGCTCACCTGGCCACGAACACCTGCCCACGCCCACCCTATGGTATATAAACTCGCAGAACCAGAGTCAAAAGAAAAAATTCAAAACTAGGCCACACTGTTTCAARTTTGAAATGATCATAACTTGGCTCAAATGGAAGATTTTTGAAATCTGAAACTAACCATATATATTATGACCTAGTTTTCTGAAATGTTGGTTTTCTAGGCCACCAATCTTCAAGTGGTCATATCTGGTTTCTTAATTGATATTTTAAAGTTTTGAAAGCTGCAGTGACATTTGCGAGATGCACAAATTTCAAAAAAAATGAATTATTAAACTTCTCAAATGAATCATAAATGTAGGTTAAAAACATAAAACATAATAATTTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAGAAAAAAAATTTCAGAACAAACGCAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGATGGAAAACGGGAAACTCCAGGAATAAATGTGAGTGGATTACTGTAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>280 202 191 186 114 27</canonical_bands>
                <polymorphic_bands>280 213 202 191 114</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>156 135 130 114 111 101 60 56 51 27 23 16 12 8</canonical_bands>
                <polymorphic_bands>162 156 130 114 111 101 60 56 51 23 16 12 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAGAACCAGAGTCAAAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAAATTTGTGCATCTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GCAGAACCAGAGTCAAAAGAAAAAATTCAAAACTAGGCCACACTGTTTCAAATTTGAAATGATCATAACTTGGCTCAAATGGAAGATTTTTGAAATCTGAAACTAACCATATATATTATGACCTAGTTTTCTGAAATGTTGGTTTTCTAGGCCACCAATCTTCAAGTGGTCATATCTGGTTTCTTAATTGATATTTTAAAGTTTTGAAAGCTGCAGTGACATTTGCGAGATGCACAAATTTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GCAGAACCAGAGTCAAAAGAAAAAATTCAAAACTAGGCCACACTGTTTCAARTTTGAAATGATCATAACTTGGCTCAAATGGAAGATTTTTGAAATCTGAAACTAACCATATATATTATGACCTAGTTTTCTGAAATGTTGGTTTTCTAGGCCACCAATCTTCAAGTGGTCATATCTGGTTTCTTAATTGATATTTTAAAGTTTTGAAAGCTGCAGTGACATTTGCGAGATGCACAAATTTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29812</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>4091</contig_pos>
        <strand></strand>
        <context>tggttttcta[G/T]gccaccaatc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAACTAACCATATATATTATGACCTAGTTTTCTGAAATGTTGGTTTTCTA</left_flank>
        <right_flank>GCCACCAATCTTCAAGTGGTCATATCTGGTTTCTTAATTGATATTTTAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCAATTCAACAATCCGAGAAGAACCAGACTTGCATCGGTTGATCTGATTGGTTTGATGTAGTAATTGCTTTATTGAAAGCTGCTCACCCCGTTTGAGAAAGATTTCTTCTTTTTTGGTTAAAAATATGGAATCTATTGTTAGCTCCCAAGTCTCCTTGTATATTTTTTTTTCTAATTTATGAATTTTTTGAAATCTCATCCTTTAATTCCTATGAAAATTGTTTTTATTGATTTTGAATAAACAGTGAATGGTTATTTTCATACATGTTCCTACTGAAGTGAGTCTCGATCAAACCTGCTCACCTGGCCACGAACACCTGCCCACGCCCACCCTATGGTATATAAACTCGCAGAACCAGAGTCAAAAGAAAAAATTCAAAACTAGGCCACACTGTTTCAAATTTGAAATGATCATAACTTGGCTCAAATGGAAGATTTTTGAAATCTGAAACTAACCATATATATTATGACCTAGTTTTCTGAAATGTTGGTTTTCTAGGCCACCAATCTTCAAGTGGTCATATCTGGTTTCTTAATTGATATTTTAAAGTTTTGAAAGCTGCAGTGACATTTGCGAGATGCACAAATTTCAAAAAAAATGAATTATTAAACTTCTCAAATGAATCATAAATGTAGGTTAAAAACATAAAACATAATAATTTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAGAAAAAAAATTTCAGAACAAACGCAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGATGGAAAACGGGAAACTCCAGGAATAAATGTGAGTGGATTACTGTAGTTCTGAAAATGTTCCACATTTTCAGATTTATACATGGTCCGATGGATATACAAAAGGGTACAAAGCATTTGAAAAGAAGTGGGCGCGTATTTCTGGAGTA</canonical>
            <polymorphic>GGCAATTCAACAATCCGAGAAGAACCAGACTTGCATCGGTTGATCTGATTGGTTTGATGTAGTAATTGCTTTATTGAAAGCTGCTCACCCCGTTTGAGAAAGATTTCTTCTTTTTTGGTTAAAAATATGGAATCTATTGTTAGCTCCCAAGTCTCCTTGTATATTTTTTTTTCTAATTTATGAATTTTTTGAAATCTCATCCTTTAATTCCTATGAAAATTGTTTTTATTGATTTTGAATAAACAGTGAATGGTTATTTTCATACATGTTCCTACTGAAGTGAGTCTCGATCAAACCTGCTCACCTGGCCACGAACACCTGCCCACGCCCACCCTATGGTATATAAACTCGCAGAACCAGAGTCAAAAGAAAAAATTCAAAACTAGGCCACACTGTTTCAAATTTGAAATGATCATAACTTGGCTCAAATGGAAGATTTTTGAAATCTGAAACTAACCATATATATTATGACCTAGTTTTCTGAAATGTTGGTTTTCTAKGCCACCAATCTTCAAGTGGTCATATCTGGTTTCTTAATTGATATTTTAAAGTTTTGAAAGCTGCAGTGACATTTGCGAGATGCACAAATTTCAAAAAAAATGAATTATTAAACTTCTCAAATGAATCATAAATGTAGGTTAAAAACATAAAACATAATAATTTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAGAAAAAAAATTTCAGAACAAACGCAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGATGGAAAACGGGAAACTCCAGGAATAAATGTGAGTGGATTACTGTAGTTCTGAAAATGTTCCACATTTTCAGATTTATACATGGTCCGATGGATATACAAAAGGGTACAAAGCATTTGAAAAGAAGTGGGCGCGTATTTCTGGAGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 383 90 24</canonical_bands>
                <polymorphic_bands>527 383 90</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>499 308 114 79</canonical_bands>
                <polymorphic_bands>613 308 79</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>186 165 120 80 79 78 72 63 59 52 36 10</canonical_bands>
                <polymorphic_bands>186 165 137 120 80 79 72 63 52 36 10</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>499 308 114 79</canonical_bands>
                <polymorphic_bands>613 308 79</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAGAACCAGAGTCAAAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAAATTTGTGCATCTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GCAGAACCAGAGTCAAAAGAAAAAATTCAAAACTAGGCCACACTGTTTCAAATTTGAAATGATCATAACTTGGCTCAAATGGAAGATTTTTGAAATCTGAAACTAACCATATATATTATGACCTAGTTTTCTGAAATGTTGGTTTTCTAGGCCACCAATCTTCAAGTGGTCATATCTGGTTTCTTAATTGATATTTTAAAGTTTTGAAAGCTGCAGTGACATTTGCGAGATGCACAAATTTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GCAGAACCAGAGTCAAAAGAAAAAATTCAAAACTAGGCCACACTGTTTCAAATTTGAAATGATCATAACTTGGCTCAAATGGAAGATTTTTGAAATCTGAAACTAACCATATATATTATGACCTAGTTTTCTGAAATGTTGGTTTTCTAKGCCACCAATCTTCAAGTGGTCATATCTGGTTTCTTAATTGATATTTTAAAGTTTTGAAAGCTGCAGTGACATTTGCGAGATGCACAAATTTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29813</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>4240</contig_pos>
        <strand>+</strand>
        <context>TTAAAAACAT[A/T]ARACATAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATGAATTATTAAACTTCTCAAATGAATCATAAATGTAGGTTAAAAACAT</left_flank>
        <right_flank>AAACATAATAATTTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCTCCTTGTATATTTTTTTTTCTAATTTATGAATTTTTTGAAATCTCATCCTTTAATTCCTATGAAAATTGTTTTTATTGATTTTGAATAAACAGTGAATGGTTATTTTCATACATGTTCCTACTGAAGTGAGTCTCGATCAAACCTGCTCACCTGGCCACGAACACCTGCCCACGCCCACCCTATGGTATATAAACTCGCAGAACCAGAGTCAAAAGAAAAAATTCAAAACTAGGCCACACTGTTTCAAATTTGAAATGATCATAACTTGGCTCAAATGGAAGATTTTTGAAATCTGAAACTAACCATATATATTATGACCTAGTTTTCTGAAATGTTGGTTTTCTAGGCCACCAATCTTCAAGTGGTCATATCTGGTTTCTTAATTGATATTTTAAAGTTTTGAAAGCTGCAGTGACATTTGCGAGATGCACAAATTTCAAAAAAAATGAATTATTAAACTTCTCAAATGAATCATAAATGTAGGTTAAAAACATAAAACATAATAATTTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAGAAAAAAAATTTCAGAACAAACGCAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGATGGAAAACGGGAAACTCCAGGAATAAATGTGAGTGGATTACTGTAGTTCTGAAAATGTTCCACATTTTCAGATTTATACATGGTCCGATGGATATACAAAAGGGTACAAAGCATTTGAAAAGAAGTGGGCGCGTATTTCTGGAGTAGATCATGAGTGAGTCAGAAAAGTTTTTTCCAAAAATTATAAAACACCCTTTTATAACTTTTAGGGGTTTGATACAAGATTGTTTGGTCGTATCAACCGTTCCAAGCCAAGAAATCCTACACGACGTCGACTGTGAATATGGAGCCGGAA</canonical>
            <polymorphic>AGTCTCCTTGTATATTTTTTTTTCTAATTTATGAATTTTTTGAAATCTCATCCTTTAATTCCTATGAAAATTGTTTTTATTGATTTTGAATAAACAGTGAATGGTTATTTTCATACATGTTCCTACTGAAGTGAGTCTCGATCAAACCTGCTCACCTGGCCACGAACACCTGCCCACGCCCACCCTATGGTATATAAACTCGCAGAACCAGAGTCAAAAGAAAAAATTCAAAACTAGGCCACACTGTTTCAAATTTGAAATGATCATAACTTGGCTCAAATGGAAGATTTTTGAAATCTGAAACTAACCATATATATTATGACCTAGTTTTCTGAAATGTTGGTTTTCTAGGCCACCAATCTTCAAGTGGTCATATCTGGTTTCTTAATTGATATTTTAAAGTTTTGAAAGCTGCAGTGACATTTGCGAGATGCACAAATTTCAAAAAAAATGAATTATTAAACTTCTCAAATGAATCATAAATGTAGGTTAAAAACATWAAACATAATAATTTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAGAAAAAAAATTTCAGAACAAACGCAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGATGGAAAACGGGAAACTCCAGGAATAAATGTGAGTGGATTACTGTAGTTCTGAAAATGTTCCACATTTTCAGATTTATACATGGTCCGATGGATATACAAAAGGGTACAAAGCATTTGAAAAGAAGTGGGCGCGTATTTCTGGAGTAGATCATGAGTGAGTCAGAAAAGTTTTTTCCAAAAATTATAAAACACCCTTTTATAACTTTTAGGGGTTTGATACAAGATTGTTTGGTCGTATCAACCGTTCCAAGCCAAGAAATCCTACACGACGTCGACTGTGAATATGGAGCCGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGATGCACAAATTTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CGATGAAGCGTTACTACATTC</pcr_primer_p2>
		<pcr_amplicon_size>175</pcr_amplicon_size>
		<canonical_amplicon>GAGATGCACAAATTTCAAAAAAAATGAATTATTAAACTTCTCAAATGAATCATAAATGTAGGTTAAAAACATAAAACATAATAATTTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCG</canonical_amplicon>
		<polymorphic_amplicon>GAGATGCACAAATTTCAAAAAAAATGAATTATTAAACTTCTCAAATGAATCATAAATGTAGGTTAAAAACATWAAACATAATAATTTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29814</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>4242</contig_pos>
        <strand>+</strand>
        <context>AAAAACATWA[A/G]ACATAATAAY</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAATTATTAAACTTCTCAAATGAATCATAAATGTAGGTTAAAAACATAA</left_flank>
        <right_flank>ACATAATAATTTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCCTTGTATATTTTTTTTTCTAATTTATGAATTTTTTGAAATCTCATCCTTTAATTCCTATGAAAATTGTTTTTATTGATTTTGAATAAACAGTGAATGGTTATTTTCATACATGTTCCTACTGAAGTGAGTCTCGATCAAACCTGCTCACCTGGCCACGAACACCTGCCCACGCCCACCCTATGGTATATAAACTCGCAGAACCAGAGTCAAAAGAAAAAATTCAAAACTAGGCCACACTGTTTCAAATTTGAAATGATCATAACTTGGCTCAAATGGAAGATTTTTGAAATCTGAAACTAACCATATATATTATGACCTAGTTTTCTGAAATGTTGGTTTTCTAGGCCACCAATCTTCAAGTGGTCATATCTGGTTTCTTAATTGATATTTTAAAGTTTTGAAAGCTGCAGTGACATTTGCGAGATGCACAAATTTCAAAAAAAATGAATTATTAAACTTCTCAAATGAATCATAAATGTAGGTTAAAAACATAAAACATAATAATTTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAGAAAAAAAATTTCAGAACAAACGCAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGATGGAAAACGGGAAACTCCAGGAATAAATGTGAGTGGATTACTGTAGTTCTGAAAATGTTCCACATTTTCAGATTTATACATGGTCCGATGGATATACAAAAGGGTACAAAGCATTTGAAAAGAAGTGGGCGCGTATTTCTGGAGTAGATCATGAGTGAGTCAGAAAAGTTTTTTCCAAAAATTATAAAACACCCTTTTATAACTTTTAGGGGTTTGATACAAGATTGTTTGGTCGTATCAACCGTTCCAAGCCAAGAAATCCTACACGACGTCGACTGTGAATATGGAGCCGGAATT</canonical>
            <polymorphic>TCTCCTTGTATATTTTTTTTTCTAATTTATGAATTTTTTGAAATCTCATCCTTTAATTCCTATGAAAATTGTTTTTATTGATTTTGAATAAACAGTGAATGGTTATTTTCATACATGTTCCTACTGAAGTGAGTCTCGATCAAACCTGCTCACCTGGCCACGAACACCTGCCCACGCCCACCCTATGGTATATAAACTCGCAGAACCAGAGTCAAAAGAAAAAATTCAAAACTAGGCCACACTGTTTCAAATTTGAAATGATCATAACTTGGCTCAAATGGAAGATTTTTGAAATCTGAAACTAACCATATATATTATGACCTAGTTTTCTGAAATGTTGGTTTTCTAGGCCACCAATCTTCAAGTGGTCATATCTGGTTTCTTAATTGATATTTTAAAGTTTTGAAAGCTGCAGTGACATTTGCGAGATGCACAAATTTCAAAAAAAATGAATTATTAAACTTCTCAAATGAATCATAAATGTAGGTTAAAAACATAARACATAATAATTTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAGAAAAAAAATTTCAGAACAAACGCAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGATGGAAAACGGGAAACTCCAGGAATAAATGTGAGTGGATTACTGTAGTTCTGAAAATGTTCCACATTTTCAGATTTATACATGGTCCGATGGATATACAAAAGGGTACAAAGCATTTGAAAAGAAGTGGGCGCGTATTTCTGGAGTAGATCATGAGTGAGTCAGAAAAGTTTTTTCCAAAAATTATAAAACACCCTTTTATAACTTTTAGGGGTTTGATACAAGATTGTTTGGTCGTATCAACCGTTCCAAGCCAAGAAATCCTACACGACGTCGACTGTGAATATGGAGCCGGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGATGCACAAATTTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CGATGAAGCGTTACTACATTC</pcr_primer_p2>
		<pcr_amplicon_size>175</pcr_amplicon_size>
		<canonical_amplicon>GAGATGCACAAATTTCAAAAAAAATGAATTATTAAACTTCTCAAATGAATCATAAATGTAGGTTAAAAACATAAAACATAATAATTTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCG</canonical_amplicon>
		<polymorphic_amplicon>GAGATGCACAAATTTCAAAAAAAATGAATTATTAAACTTCTCAAATGAATCATAAATGTAGGTTAAAAACATAARACATAATAATTTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29815</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>4252</contig_pos>
        <strand>+</strand>
        <context>RACATAATAA[C/T]TTACAGATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACTTCTCAAATGAATCATAAATGTAGGTTAAAAACATAAAACATAATAA</left_flank>
        <right_flank>TTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAAATGAGTTCCTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTTTTTTTCTAATTTATGAATTTTTTGAAATCTCATCCTTTAATTCCTATGAAAATTGTTTTTATTGATTTTGAATAAACAGTGAATGGTTATTTTCATACATGTTCCTACTGAAGTGAGTCTCGATCAAACCTGCTCACCTGGCCACGAACACCTGCCCACGCCCACCCTATGGTATATAAACTCGCAGAACCAGAGTCAAAAGAAAAAATTCAAAACTAGGCCACACTGTTTCAAATTTGAAATGATCATAACTTGGCTCAAATGGAAGATTTTTGAAATCTGAAACTAACCATATATATTATGACCTAGTTTTCTGAAATGTTGGTTTTCTAGGCCACCAATCTTCAAGTGGTCATATCTGGTTTCTTAATTGATATTTTAAAGTTTTGAAAGCTGCAGTGACATTTGCGAGATGCACAAATTTCAAAAAAAATGAATTATTAAACTTCTCAAATGAATCATAAATGTAGGTTAAAAACATAAAACATAATAATTTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAGAAAAAAAATTTCAGAACAAACGCAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGATGGAAAACGGGAAACTCCAGGAATAAATGTGAGTGGATTACTGTAGTTCTGAAAATGTTCCACATTTTCAGATTTATACATGGTCCGATGGATATACAAAAGGGTACAAAGCATTTGAAAAGAAGTGGGCGCGTATTTCTGGAGTAGATCATGAGTGAGTCAGAAAAGTTTTTTCCAAAAATTATAAAACACCCTTTTATAACTTTTAGGGGTTTGATACAAGATTGTTTGGTCGTATCAACCGTTCCAAGCCAAGAAATCCTACACGACGTCGACTGTGAATATGGAGCCGGAATTCAACACGGCG</canonical>
            <polymorphic>TATTTTTTTTTCTAATTTATGAATTTTTTGAAATCTCATCCTTTAATTCCTATGAAAATTGTTTTTATTGATTTTGAATAAACAGTGAATGGTTATTTTCATACATGTTCCTACTGAAGTGAGTCTCGATCAAACCTGCTCACCTGGCCACGAACACCTGCCCACGCCCACCCTATGGTATATAAACTCGCAGAACCAGAGTCAAAAGAAAAAATTCAAAACTAGGCCACACTGTTTCAAATTTGAAATGATCATAACTTGGCTCAAATGGAAGATTTTTGAAATCTGAAACTAACCATATATATTATGACCTAGTTTTCTGAAATGTTGGTTTTCTAGGCCACCAATCTTCAAGTGGTCATATCTGGTTTCTTAATTGATATTTTAAAGTTTTGAAAGCTGCAGTGACATTTGCGAGATGCACAAATTTCAAAAAAAATGAATTATTAAACTTCTCAAATGAATCATAAATGTAGGTTAAAAACATAAAACATAATAAYTTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAGAAAAAAAATTTCAGAACAAACGCAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGATGGAAAACGGGAAACTCCAGGAATAAATGTGAGTGGATTACTGTAGTTCTGAAAATGTTCCACATTTTCAGATTTATACATGGTCCGATGGATATACAAAAGGGTACAAAGCATTTGAAAAGAAGTGGGCGCGTATTTCTGGAGTAGATCATGAGTGAGTCAGAAAAGTTTTTTCCAAAAATTATAAAACACCCTTTTATAACTTTTAGGGGTTTGATACAAGATTGTTTGGTCGTATCAACCGTTCCAAGCCAAGAAATCCTACACGACGTCGACTGTGAATATGGAGCCGGAATTCAACACGGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>245 156 135 130 114 56 51 27 23 16 14 13 12 8</canonical_bands>
                <polymorphic_bands>245 186 156 135 114 51 27 23 16 14 13 12 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAATTATTAAACTTCTCAAATGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTCCATCTATCCAAACTCCT</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>TGAATTATTAAACTTCTCAAATGAATCATAAATGTAGGTTAAAAACATAAAACATAATAATTTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAGAAAAAAAATTTCAGAACAAACGCAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGATGGAAA</canonical_amplicon>
		<polymorphic_amplicon>TGAATTATTAAACTTCTCAAATGAATCATAAATGTAGGTTAAAAACATAAAACATAATAAYTTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAGAAAAAAAATTTCAGAACAAACGCAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGATGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29816</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>4271</contig_pos>
        <strand>+</strand>
        <context>TTTCCGAAAA[A/G]CCATTATCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATGTAGGTTAAAAACATAAAACATAATAATTTACAGATTTTCCGAAAA</left_flank>
        <right_flank>CCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAATTTTTTGAAATCTCATCCTTTAATTCCTATGAAAATTGTTTTTATTGATTTTGAATAAACAGTGAATGGTTATTTTCATACATGTTCCTACTGAAGTGAGTCTCGATCAAACCTGCTCACCTGGCCACGAACACCTGCCCACGCCCACCCTATGGTATATAAACTCGCAGAACCAGAGTCAAAAGAAAAAATTCAAAACTAGGCCACACTGTTTCAAATTTGAAATGATCATAACTTGGCTCAAATGGAAGATTTTTGAAATCTGAAACTAACCATATATATTATGACCTAGTTTTCTGAAATGTTGGTTTTCTAGGCCACCAATCTTCAAGTGGTCATATCTGGTTTCTTAATTGATATTTTAAAGTTTTGAAAGCTGCAGTGACATTTGCGAGATGCACAAATTTCAAAAAAAATGAATTATTAAACTTCTCAAATGAATCATAAATGTAGGTTAAAAACATAAAACATAATAATTTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAGAAAAAAAATTTCAGAACAAACGCAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGATGGAAAACGGGAAACTCCAGGAATAAATGTGAGTGGATTACTGTAGTTCTGAAAATGTTCCACATTTTCAGATTTATACATGGTCCGATGGATATACAAAAGGGTACAAAGCATTTGAAAAGAAGTGGGCGCGTATTTCTGGAGTAGATCATGAGTGAGTCAGAAAAGTTTTTTCCAAAAATTATAAAACACCCTTTTATAACTTTTAGGGGTTTGATACAAGATTGTTTGGTCGTATCAACCGTTCCAAGCCAAGAAATCCTACACGACGTCGACTGTGAATATGGAGCCGGAATTCAACACGGCGTGGTTTGCGGATATAAACT</canonical>
            <polymorphic>TGAATTTTTTGAAATCTCATCCTTTAATTCCTATGAAAATTGTTTTTATTGATTTTGAATAAACAGTGAATGGTTATTTTCATACATGTTCCTACTGAAGTGAGTCTCGATCAAACCTGCTCACCTGGCCACGAACACCTGCCCACGCCCACCCTATGGTATATAAACTCGCAGAACCAGAGTCAAAAGAAAAAATTCAAAACTAGGCCACACTGTTTCAAATTTGAAATGATCATAACTTGGCTCAAATGGAAGATTTTTGAAATCTGAAACTAACCATATATATTATGACCTAGTTTTCTGAAATGTTGGTTTTCTAGGCCACCAATCTTCAAGTGGTCATATCTGGTTTCTTAATTGATATTTTAAAGTTTTGAAAGCTGCAGTGACATTTGCGAGATGCACAAATTTCAAAAAAAATGAATTATTAAACTTCTCAAATGAATCATAAATGTAGGTTAAAAACATAAAACATAATAATTTACAGATTTTCCGAAAARCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAGAAAAAAAATTTCAGAACAAACGCAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGATGGAAAACGGGAAACTCCAGGAATAAATGTGAGTGGATTACTGTAGTTCTGAAAATGTTCCACATTTTCAGATTTATACATGGTCCGATGGATATACAAAAGGGTACAAAGCATTTGAAAAGAAGTGGGCGCGTATTTCTGGAGTAGATCATGAGTGAGTCAGAAAAGTTTTTTCCAAAAATTATAAAACACCCTTTTATAACTTTTAGGGGTTTGATACAAGATTGTTTGGTCGTATCAACCGTTCCAAGCCAAGAAATCCTACACGACGTCGACTGTGAATATGGAGCCGGAATTCAACACGGCGTGGTTTGCGGATATAAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>291 128 120 79 78 72 59 52 38 37 36 10</canonical_bands>
                <polymorphic_bands>291 130 128 79 78 72 59 52 38 37 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTTCTCAAATGAATCATAAATGT</pcr_primer_p1>
		<pcr_primer_p2>TTTCCATCTATCCAAACTCCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACTTCTCAAATGAATCATAAATGTAGGTTAAAAACATAAAACATAATAATTTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAGAAAAAAAATTTCAGAACAAACGCAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGATGGAAA</canonical_amplicon>
		<polymorphic_amplicon>AACTTCTCAAATGAATCATAAATGTAGGTTAAAAACATAAAACATAATAATTTACAGATTTTCCGAAAARCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAGAAAAAAAATTTCAGAACAAACGCAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGATGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29817</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>4308</contig_pos>
        <strand>+</strand>
        <context>CCTGATTGTT[G/T]TTTGGGTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATTTTCCGAAAAGCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTT</left_flank>
        <right_flank>TTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGTTTTTATTGATTTTGAATAAACAGTGAATGGTTATTTTCATACATGTTCCTACTGAAGTGAGTCTCGATCAAACCTGCTCACCTGGCCACGAACACCTGCCCACGCCCACCCTATGGTATATAAACTCGCAGAACCAGAGTCAAAAGAAAAAATTCAAAACTAGGCCACACTGTTTCAAATTTGAAATGATCATAACTTGGCTCAAATGGAAGATTTTTGAAATCTGAAACTAACCATATATATTATGACCTAGTTTTCTGAAATGTTGGTTTTCTAGGCCACCAATCTTCAAGTGGTCATATCTGGTTTCTTAATTGATATTTTAAAGTTTTGAAAGCTGCAGTGACATTTGCGAGATGCACAAATTTCAAAAAAAATGAATTATTAAACTTCTCAAATGAATCATAAATGTAGGTTAAAAACATAAAACATAATAATTTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAGAAAAAAAATTTCAGAACAAACGCAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGATGGAAAACGGGAAACTCCAGGAATAAATGTGAGTGGATTACTGTAGTTCTGAAAATGTTCCACATTTTCAGATTTATACATGGTCCGATGGATATACAAAAGGGTACAAAGCATTTGAAAAGAAGTGGGCGCGTATTTCTGGAGTAGATCATGAGTGAGTCAGAAAAGTTTTTTCCAAAAATTATAAAACACCCTTTTATAACTTTTAGGGGTTTGATACAAGATTGTTTGGTCGTATCAACCGTTCCAAGCCAAGAAATCCTACACGACGTCGACTGTGAATATGGAGCCGGAATTCAACACGGCGTGGTTTGCGGATATAAACTTGAATAATTTTTTGTCCTTTTGTGTATCTGTTTGCCC</canonical>
            <polymorphic>AATTGTTTTTATTGATTTTGAATAAACAGTGAATGGTTATTTTCATACATGTTCCTACTGAAGTGAGTCTCGATCAAACCTGCTCACCTGGCCACGAACACCTGCCCACGCCCACCCTATGGTATATAAACTCGCAGAACCAGAGTCAAAAGAAAAAATTCAAAACTAGGCCACACTGTTTCAAATTTGAAATGATCATAACTTGGCTCAAATGGAAGATTTTTGAAATCTGAAACTAACCATATATATTATGACCTAGTTTTCTGAAATGTTGGTTTTCTAGGCCACCAATCTTCAAGTGGTCATATCTGGTTTCTTAATTGATATTTTAAAGTTTTGAAAGCTGCAGTGACATTTGCGAGATGCACAAATTTCAAAAAAAATGAATTATTAAACTTCTCAAATGAATCATAAATGTAGGTTAAAAACATAAAACATAATAATTTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTKTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAGAAAAAAAATTTCAGAACAAACGCAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGATGGAAAACGGGAAACTCCAGGAATAAATGTGAGTGGATTACTGTAGTTCTGAAAATGTTCCACATTTTCAGATTTATACATGGTCCGATGGATATACAAAAGGGTACAAAGCATTTGAAAAGAAGTGGGCGCGTATTTCTGGAGTAGATCATGAGTGAGTCAGAAAAGTTTTTTCCAAAAATTATAAAACACCCTTTTATAACTTTTAGGGGTTTGATACAAGATTGTTTGGTCGTATCAACCGTTCCAAGCCAAGAAATCCTACACGACGTCGACTGTGAATATGGAGCCGGAATTCAACACGGCGTGGTTTGCGGATATAAACTTGAATAATTTTTTGTCCTTTTGTGTATCTGTTTGCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTTCTCAAATGAATCATAAATGT</pcr_primer_p1>
		<pcr_primer_p2>TTTCCATCTATCCAAACTCCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACTTCTCAAATGAATCATAAATGTAGGTTAAAAACATAAAACATAATAATTTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAGAAAAAAAATTTCAGAACAAACGCAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGATGGAAA</canonical_amplicon>
		<polymorphic_amplicon>AACTTCTCAAATGAATCATAAATGTAGGTTAAAAACATAAAACATAATAATTTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTKTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAGAAAAAAAATTTCAGAACAAACGCAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGATGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29818</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>4374</contig_pos>
        <strand>+</strand>
        <context>CATCGTATAG[A/G]AAAAAAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAG</left_flank>
        <right_flank>AAAAAAATTTCAGAACAAACGCAGGAGAAAGCTCCGACGACACTACCGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTCGATCAAACCTGCTCACCTGGCCACGAACACCTGCCCACGCCCACCCTATGGTATATAAACTCGCAGAACCAGAGTCAAAAGAAAAAATTCAAAACTAGGCCACACTGTTTCAAATTTGAAATGATCATAACTTGGCTCAAATGGAAGATTTTTGAAATCTGAAACTAACCATATATATTATGACCTAGTTTTCTGAAATGTTGGTTTTCTAGGCCACCAATCTTCAAGTGGTCATATCTGGTTTCTTAATTGATATTTTAAAGTTTTGAAAGCTGCAGTGACATTTGCGAGATGCACAAATTTCAAAAAAAATGAATTATTAAACTTCTCAAATGAATCATAAATGTAGGTTAAAAACATAAAACATAATAATTTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAGAAAAAAAATTTCAGAACAAACGCAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGATGGAAAACGGGAAACTCCAGGAATAAATGTGAGTGGATTACTGTAGTTCTGAAAATGTTCCACATTTTCAGATTTATACATGGTCCGATGGATATACAAAAGGGTACAAAGCATTTGAAAAGAAGTGGGCGCGTATTTCTGGAGTAGATCATGAGTGAGTCAGAAAAGTTTTTTCCAAAAATTATAAAACACCCTTTTATAACTTTTAGGGGTTTGATACAAGATTGTTTGGTCGTATCAACCGTTCCAAGCCAAGAAATCCTACACGACGTCGACTGTGAATATGGAGCCGGAATTCAACACGGCGTGGTTTGCGGATATAAACTTGAATAATTTTTTGTCCTTTTGTGTATCTGTTTGCCCTAATAAATGTTATCTTTTTTGTTTGAAAATTGGGTTCTCGAATTGCATAGATTTCAAACGATTCGA</canonical>
            <polymorphic>GTCTCGATCAAACCTGCTCACCTGGCCACGAACACCTGCCCACGCCCACCCTATGGTATATAAACTCGCAGAACCAGAGTCAAAAGAAAAAATTCAAAACTAGGCCACACTGTTTCAAATTTGAAATGATCATAACTTGGCTCAAATGGAAGATTTTTGAAATCTGAAACTAACCATATATATTATGACCTAGTTTTCTGAAATGTTGGTTTTCTAGGCCACCAATCTTCAAGTGGTCATATCTGGTTTCTTAATTGATATTTTAAAGTTTTGAAAGCTGCAGTGACATTTGCGAGATGCACAAATTTCAAAAAAAATGAATTATTAAACTTCTCAAATGAATCATAAATGTAGGTTAAAAACATAAAACATAATAATTTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAGRAAAAAAATTTCAGAACAAACGCAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGATGGAAAACGGGAAACTCCAGGAATAAATGTGAGTGGATTACTGTAGTTCTGAAAATGTTCCACATTTTCAGATTTATACATGGTCCGATGGATATACAAAAGGGTACAAAGCATTTGAAAAGAAGTGGGCGCGTATTTCTGGAGTAGATCATGAGTGAGTCAGAAAAGTTTTTTCCAAAAATTATAAAACACCCTTTTATAACTTTTAGGGGTTTGATACAAGATTGTTTGGTCGTATCAACCGTTCCAAGCCAAGAAATCCTACACGACGTCGACTGTGAATATGGAGCCGGAATTCAACACGGCGTGGTTTGCGGATATAAACTTGAATAATTTTTTGTCCTTTTGTGTATCTGTTTGCCCTAATAAATGTTATCTTTTTTGTTTGAAAATTGGGTTCTCGAATTGCATAGATTTCAAACGATTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTGTATAAAATGAGTTCCTGAT</pcr_primer_p1>
		<pcr_primer_p2>ACCATGTATAAATCTGAAAATGTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAGAAAAAAAATTTCAGAACAAACGCAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGATGGAAAACGGGAAACTCCAGGAATAAATGTGAGTGGATTACTGTAGTTCTGAAAATGTTCCACATTTTCAGATTTATACATGGT</canonical_amplicon>
		<polymorphic_amplicon>GCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAGRAAAAAAATTTCAGAACAAACGCAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGATGGAAAACGGGAAACTCCAGGAATAAATGTGAGTGGATTACTGTAGTTCTGAAAATGTTCCACATTTTCAGATTTATACATGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29819</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>4395</contig_pos>
        <strand></strand>
        <context>CAGAACAAAC[G/A]CAGGAGAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGTCTTGGGCTGACAGAAGCATCGTATAGAAAAAAAATTTCAGAACAAAC</left_flank>
        <right_flank>CAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGCCACGAACACCTGCCCACGCCCACCCTATGGTATATAAACTCGCAGAACCAGAGTCAAAAGAAAAAATTCAAAACTAGGCCACACTGTTTCAAATTTGAAATGATCATAACTTGGCTCAAATGGAAGATTTTTGAAATCTGAAACTAACCATATATATTATGACCTAGTTTTCTGAAATGTTGGTTTTCTAGGCCACCAATCTTCAAGTGGTCATATCTGGTTTCTTAATTGATATTTTAAAGTTTTGAAAGCTGCAGTGACATTTGCGAGATGCACAAATTTCAAAAAAAATGAATTATTAAACTTCTCAAATGAATCATAAATGTAGGTTAAAAACATAAAACATAATAATTTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAGAAAAAAAATTTCAGAACAAACGCAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGATGGAAAACGGGAAACTCCAGGAATAAATGTGAGTGGATTACTGTAGTTCTGAAAATGTTCCACATTTTCAGATTTATACATGGTCCGATGGATATACAAAAGGGTACAAAGCATTTGAAAAGAAGTGGGCGCGTATTTCTGGAGTAGATCATGAGTGAGTCAGAAAAGTTTTTTCCAAAAATTATAAAACACCCTTTTATAACTTTTAGGGGTTTGATACAAGATTGTTTGGTCGTATCAACCGTTCCAAGCCAAGAAATCCTACACGACGTCGACTGTGAATATGGAGCCGGAATTCAACACGGCGTGGTTTGCGGATATAAACTTGAATAATTTTTTGTCCTTTTGTGTATCTGTTTGCCCTAATAAATGTTATCTTTTTTGTTTGAAAATTGGGTTCTCGAATTGCATAGATTTCAAACGATTCGATTCTATGATTTTACGTAGTTA</canonical>
            <polymorphic>CTGGCCACGAACACCTGCCCACGCCCACCCTATGGTATATAAACTCGCAGAACCAGAGTCAAAAGAAAAAATTCAAAACTAGGCCACACTGTTTCAAATTTGAAATGATCATAACTTGGCTCAAATGGAAGATTTTTGAAATCTGAAACTAACCATATATATTATGACCTAGTTTTCTGAAATGTTGGTTTTCTAGGCCACCAATCTTCAAGTGGTCATATCTGGTTTCTTAATTGATATTTTAAAGTTTTGAAAGCTGCAGTGACATTTGCGAGATGCACAAATTTCAAAAAAAATGAATTATTAAACTTCTCAAATGAATCATAAATGTAGGTTAAAAACATAAAACATAATAATTTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAGAAAAAAAATTTCAGAACAAACRCAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGATGGAAAACGGGAAACTCCAGGAATAAATGTGAGTGGATTACTGTAGTTCTGAAAATGTTCCACATTTTCAGATTTATACATGGTCCGATGGATATACAAAAGGGTACAAAGCATTTGAAAAGAAGTGGGCGCGTATTTCTGGAGTAGATCATGAGTGAGTCAGAAAAGTTTTTTCCAAAAATTATAAAACACCCTTTTATAACTTTTAGGGGTTTGATACAAGATTGTTTGGTCGTATCAACCGTTCCAAGCCAAGAAATCCTACACGACGTCGACTGTGAATATGGAGCCGGAATTCAACACGGCGTGGTTTGCGGATATAAACTTGAATAATTTTTTGTCCTTTTGTGTATCTGTTTGCCCTAATAAATGTTATCTTTTTTGTTTGAAAATTGGGTTCTCGAATTGCATAGATTTCAAACGATTCGATTCTATGATTTTACGTAGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTGTATAAAATGAGTTCCTGAT</pcr_primer_p1>
		<pcr_primer_p2>ACCATGTATAAATCTGAAAATGTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAGAAAAAAAATTTCAGAACAAACGCAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGATGGAAAACGGGAAACTCCAGGAATAAATGTGAGTGGATTACTGTAGTTCTGAAAATGTTCCACATTTTCAGATTTATACATGGT</canonical_amplicon>
		<polymorphic_amplicon>GCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAGAAAAAAAATTTCAGAACAAACRCAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGATGGAAAACGGGAAACTCCAGGAATAAATGTGAGTGGATTACTGTAGTTCTGAAAATGTTCCACATTTTCAGATTTATACATGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29820</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>4630</contig_pos>
        <strand>+</strand>
        <context>CCAAAAATTA[C/T]AAAACACCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTCTGGAGTAGATCATGAGTGAGTCAGAAAAGTTTTTTCCAAAAATTA</left_flank>
        <right_flank>AAAACACCCTTTTATAACTTTTAGGGGTTTGATACAAGATTGTTTGGTCG</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATATTTTAAAGTTTTGAAAGCTGCAGTGACATTTGCGAGATGCACAAATTTCAAAAAAAATGAATTATTAAACTTCTCAAATGAATCATAAATGTAGGTTAAAAACATAAAACATAATAATTTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAGAAAAAAAATTTCAGAACAAACGCAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGATGGAAAACGGGAAACTCCAGGAATAAATGTGAGTGGATTACTGTAGTTCTGAAAATGTTCCACATTTTCAGATTTATACATGGTCCGATGGATATACAAAAGGGTACAAAGCATTTGAAAAGAAGTGGGCGCGTATTTCTGGAGTAGATCATGAGTGAGTCAGAAAAGTTTTTTCCAAAAATTATAAAACACCCTTTTATAACTTTTAGGGGTTTGATACAAGATTGTTTGGTCGTATCAACCGTTCCAAGCCAAGAAATCCTACACGACGTCGACTGTGAATATGGAGCCGGAATTCAACACGGCGTGGTTTGCGGATATAAACTTGAATAATTTTTTGTCCTTTTGTGTATCTGTTTGCCCTAATAAATGTTATCTTTTTTGTTTGAAAATTGGGTTCTCGAATTGCATAGATTTCAAACGATTCGATTCTATGATTTTACGTAGTTATAGTGATTTCTGAATTTTTGAAATTTTTTATGTAACGCCAACATTTCTGAGTTTACAAGGAATCACAAAATTCCCAAATAGCTGTGTTCTCTTTGAATTTGAAAAACAGAAGATTCGTCCCCAAATTTCAAGATTTGATTTACCGTAAACACTCTAATAGAACGCCACCCGGACCGTCTAACTTTGAGCCTATATATCTCACTTCTCTTGGAAGATATCAAAAAGTTGTCTGATA</canonical>
            <polymorphic>GATATTTTAAAGTTTTGAAAGCTGCAGTGACATTTGCGAGATGCACAAATTTCAAAAAAAATGAATTATTAAACTTCTCAAATGAATCATAAATGTAGGTTAAAAACATAAAACATAATAATTTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAGAAAAAAAATTTCAGAACAAACGCAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGATGGAAAACGGGAAACTCCAGGAATAAATGTGAGTGGATTACTGTAGTTCTGAAAATGTTCCACATTTTCAGATTTATACATGGTCCGATGGATATACAAAAGGGTACAAAGCATTTGAAAAGAAGTGGGCGCGTATTTCTGGAGTAGATCATGAGTGAGTCAGAAAAGTTTTTTCCAAAAATTAYAAAACACCCTTTTATAACTTTTAGGGGTTTGATACAAGATTGTTTGGTCGTATCAACCGTTCCAAGCCAAGAAATCCTACACGACGTCGACTGTGAATATGGAGCCGGAATTCAACACGGCGTGGTTTGCGGATATAAACTTGAATAATTTTTTGTCCTTTTGTGTATCTGTTTGCCCTAATAAATGTTATCTTTTTTGTTTGAAAATTGGGTTCTCGAATTGCATAGATTTCAAACGATTCGATTCTATGATTTTACGTAGTTATAGTGATTTCTGAATTTTTGAAATTTTTTATGTAACGCCAACATTTCTGAGTTTACAAGGAATCACAAAATTCCCAAATAGCTGTGTTCTCTTTGAATTTGAAAAACAGAAGATTCGTCCCCAAATTTCAAGATTTGATTTACCGTAAACACTCTAATAGAACGCCACCCGGACCGTCTAACTTTGAGCCTATATATCTCACTTCTCTTGGAAGATATCAAAAAGTTGTCTGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>499 486 15</canonical_bands>
                <polymorphic_bands>514 486</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATGGATATACAAAAGGGTACAA</pcr_primer_p1>
		<pcr_primer_p2>TATTCAAGTTTATATCCGCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GATGGATATACAAAAGGGTACAAAGCATTTGAAAAGAAGTGGGCGCGTATTTCTGGAGTAGATCATGAGTGAGTCAGAAAAGTTTTTTCCAAAAATTATAAAACACCCTTTTATAACTTTTAGGGGTTTGATACAAGATTGTTTGGTCGTATCAACCGTTCCAAGCCAAGAAATCCTACACGACGTCGACTGTGAATATGGAGCCGGAATTCAACACGGCGTGGTTTGCGGATATAAACTTGAATA</canonical_amplicon>
		<polymorphic_amplicon>GATGGATATACAAAAGGGTACAAAGCATTTGAAAAGAAGTGGGCGCGTATTTCTGGAGTAGATCATGAGTGAGTCAGAAAAGTTTTTTCCAAAAATTAYAAAACACCCTTTTATAACTTTTAGGGGTTTGATACAAGATTGTTTGGTCGTATCAACCGTTCCAAGCCAAGAAATCCTACACGACGTCGACTGTGAATATGGAGCCGGAATTCAACACGGCGTGGTTTGCGGATATAAACTTGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29821</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>4708</contig_pos>
        <strand>+</strand>
        <context>CAAGAAATCC[A/T]ACACGACGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGATACAAGATTGTTTGGTCGTATCAACCGTTCCAAGCCAAGAAATCC</left_flank>
        <right_flank>ACACGACGTCGACTGTGAATATGGAGCCGGAATTCAACACGGCGTGGTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATGAATCATAAATGTAGGTTAAAAACATAAAACATAATAATTTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAGAAAAAAAATTTCAGAACAAACGCAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGATGGAAAACGGGAAACTCCAGGAATAAATGTGAGTGGATTACTGTAGTTCTGAAAATGTTCCACATTTTCAGATTTATACATGGTCCGATGGATATACAAAAGGGTACAAAGCATTTGAAAAGAAGTGGGCGCGTATTTCTGGAGTAGATCATGAGTGAGTCAGAAAAGTTTTTTCCAAAAATTATAAAACACCCTTTTATAACTTTTAGGGGTTTGATACAAGATTGTTTGGTCGTATCAACCGTTCCAAGCCAAGAAATCCTACACGACGTCGACTGTGAATATGGAGCCGGAATTCAACACGGCGTGGTTTGCGGATATAAACTTGAATAATTTTTTGTCCTTTTGTGTATCTGTTTGCCCTAATAAATGTTATCTTTTTTGTTTGAAAATTGGGTTCTCGAATTGCATAGATTTCAAACGATTCGATTCTATGATTTTACGTAGTTATAGTGATTTCTGAATTTTTGAAATTTTTTATGTAACGCCAACATTTCTGAGTTTACAAGGAATCACAAAATTCCCAAATAGCTGTGTTCTCTTTGAATTTGAAAAACAGAAGATTCGTCCCCAAATTTCAAGATTTGATTTACCGTAAACACTCTAATAGAACGCCACCCGGACCGTCTAACTTTGAGCCTATATATCTCACTTCTCTTGGAAGATATCAAAAAGTTGTCTGATAAATGTTTATCATAATATCAGCAACATTTTACCAATTAACCACTTTTTGATATCTCTCACAGAAAATGAGATACCGTAA</canonical>
            <polymorphic>CAAATGAATCATAAATGTAGGTTAAAAACATAAAACATAATAATTTACAGATTTTCCGAAAAGCCATTATCAGCTGTATAAAATGAGTTCCTGATTGTTTTTTGGGTTTTTTCGAATGTAGTAACGCTTCATCGGAGGTCTTGGGCTGACAGAAGCATCGTATAGAAAAAAAATTTCAGAACAAACGCAGGAGAAAGCTCCGACGACACTACCGGATTGGCAAGGAGTTTGGATAGATGGAAAACGGGAAACTCCAGGAATAAATGTGAGTGGATTACTGTAGTTCTGAAAATGTTCCACATTTTCAGATTTATACATGGTCCGATGGATATACAAAAGGGTACAAAGCATTTGAAAAGAAGTGGGCGCGTATTTCTGGAGTAGATCATGAGTGAGTCAGAAAAGTTTTTTCCAAAAATTATAAAACACCCTTTTATAACTTTTAGGGGTTTGATACAAGATTGTTTGGTCGTATCAACCGTTCCAAGCCAAGAAATCCWACACGACGTCGACTGTGAATATGGAGCCGGAATTCAACACGGCGTGGTTTGCGGATATAAACTTGAATAATTTTTTGTCCTTTTGTGTATCTGTTTGCCCTAATAAATGTTATCTTTTTTGTTTGAAAATTGGGTTCTCGAATTGCATAGATTTCAAACGATTCGATTCTATGATTTTACGTAGTTATAGTGATTTCTGAATTTTTGAAATTTTTTATGTAACGCCAACATTTCTGAGTTTACAAGGAATCACAAAATTCCCAAATAGCTGTGTTCTCTTTGAATTTGAAAAACAGAAGATTCGTCCCCAAATTTCAAGATTTGATTTACCGTAAACACTCTAATAGAACGCCACCCGGACCGTCTAACTTTGAGCCTATATATCTCACTTCTCTTGGAAGATATCAAAAAGTTGTCTGATAAATGTTTATCATAATATCAGCAACATTTTACCAATTAACCACTTTTTGATATCTCTCACAGAAAATGAGATACCGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGGATATACAAAAGGGTACAA</pcr_primer_p1>
		<pcr_primer_p2>TATTCAAGTTTATATCCGCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GATGGATATACAAAAGGGTACAAAGCATTTGAAAAGAAGTGGGCGCGTATTTCTGGAGTAGATCATGAGTGAGTCAGAAAAGTTTTTTCCAAAAATTATAAAACACCCTTTTATAACTTTTAGGGGTTTGATACAAGATTGTTTGGTCGTATCAACCGTTCCAAGCCAAGAAATCCTACACGACGTCGACTGTGAATATGGAGCCGGAATTCAACACGGCGTGGTTTGCGGATATAAACTTGAATA</canonical_amplicon>
		<polymorphic_amplicon>GATGGATATACAAAAGGGTACAAAGCATTTGAAAAGAAGTGGGCGCGTATTTCTGGAGTAGATCATGAGTGAGTCAGAAAAGTTTTTTCCAAAAATTATAAAACACCCTTTTATAACTTTTAGGGGTTTGATACAAGATTGTTTGGTCGTATCAACCGTTCCAAGCCAAGAAATCCWACACGACGTCGACTGTGAATATGGAGCCGGAATTCAACACGGCGTGGTTTGCGGATATAAACTTGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29822</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>5007</contig_pos>
        <strand>+</strand>
        <context>AAAAACAGAA[C/G]ATTCGTCCCC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATCACAAAATTCCCAAATAGCTGTGTTCTCTTTGAATTTGAAAAACAGAA</left_flank>
        <right_flank>ATTCGTCCCCAAATTTCAAGATTTGATTTACCGTAAACACTCTAATAGAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTTCAGATTTATACATGGTCCGATGGATATACAAAAGGGTACAAAGCATTTGAAAAGAAGTGGGCGCGTATTTCTGGAGTAGATCATGAGTGAGTCAGAAAAGTTTTTTCCAAAAATTATAAAACACCCTTTTATAACTTTTAGGGGTTTGATACAAGATTGTTTGGTCGTATCAACCGTTCCAAGCCAAGAAATCCTACACGACGTCGACTGTGAATATGGAGCCGGAATTCAACACGGCGTGGTTTGCGGATATAAACTTGAATAATTTTTTGTCCTTTTGTGTATCTGTTTGCCCTAATAAATGTTATCTTTTTTGTTTGAAAATTGGGTTCTCGAATTGCATAGATTTCAAACGATTCGATTCTATGATTTTACGTAGTTATAGTGATTTCTGAATTTTTGAAATTTTTTATGTAACGCCAACATTTCTGAGTTTACAAGGAATCACAAAATTCCCAAATAGCTGTGTTCTCTTTGAATTTGAAAAACAGAAGATTCGTCCCCAAATTTCAAGATTTGATTTACCGTAAACACTCTAATAGAACGCCACCCGGACCGTCTAACTTTGAGCCTATATATCTCACTTCTCTTGGAAGATATCAAAAAGTTGTCTGATAAATGTTTATCATAATATCAGCAACATTTTACCAATTAACCACTTTTTGATATCTCTCACAGAAAATGAGATACCGTAAAACCTCTAATAGAACGACACCCGGATCGTTTTTGATCGTTTTTGACACCCGGAAATTTCAAGATTTGATTTACCGTAGAGCTTTTACTTTTGAGCCTATATATCTCACTTCTCTTGGAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACACTTCACTAGTTAACCACTTTTTGATATCTTTCAGAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTACATGAGCACAAATTTGACGATTCGGGGGG</canonical>
            <polymorphic>CATTTTCAGATTTATACATGGTCCGATGGATATACAAAAGGGTACAAAGCATTTGAAAAGAAGTGGGCGCGTATTTCTGGAGTAGATCATGAGTGAGTCAGAAAAGTTTTTTCCAAAAATTATAAAACACCCTTTTATAACTTTTAGGGGTTTGATACAAGATTGTTTGGTCGTATCAACCGTTCCAAGCCAAGAAATCCTACACGACGTCGACTGTGAATATGGAGCCGGAATTCAACACGGCGTGGTTTGCGGATATAAACTTGAATAATTTTTTGTCCTTTTGTGTATCTGTTTGCCCTAATAAATGTTATCTTTTTTGTTTGAAAATTGGGTTCTCGAATTGCATAGATTTCAAACGATTCGATTCTATGATTTTACGTAGTTATAGTGATTTCTGAATTTTTGAAATTTTTTATGTAACGCCAACATTTCTGAGTTTACAAGGAATCACAAAATTCCCAAATAGCTGTGTTCTCTTTGAATTTGAAAAACAGAASATTCGTCCCCAAATTTCAAGATTTGATTTACCGTAAACACTCTAATAGAACGCCACCCGGACCGTCTAACTTTGAGCCTATATATCTCACTTCTCTTGGAAGATATCAAAAAGTTGTCTGATAAATGTTTATCATAATATCAGCAACATTTTACCAATTAACCACTTTTTGATATCTCTCACAGAAAATGAGATACCGTAAAACCTCTAATAGAACGACACCCGGATCGTTTTTGATCGTTTTTGACACCCGGAAATTTCAAGATTTGATTTACCGTAGAGCTTTTACTTTTGAGCCTATATATCTCACTTCTCTTGGAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACACTTCACTAGTTAACCACTTTTTGATATCTTTCAGAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTACATGAGCACAAATTTGACGATTCGGGGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>490 266 95 82 52 10 5</canonical_bands>
                <polymorphic_bands>542 266 95 82 10 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>490 361 82 52 10 5</canonical_bands>
                <polymorphic_bands>542 361 82 10 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCACAAAATTCCCAAATAGC</pcr_primer_p1>
		<pcr_primer_p2>GGGTGTCGTTCTATTAGAGGT</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>ATCACAAAATTCCCAAATAGCTGTGTTCTCTTTGAATTTGAAAAACAGAAGATTCGTCCCCAAATTTCAAGATTTGATTTACCGTAAACACTCTAATAGAACGCCACCCGGACCGTCTAACTTTGAGCCTATATATCTCACTTCTCTTGGAAGATATCAAAAAGTTGTCTGATAAATGTTTATCATAATATCAGCAACATTTTACCAATTAACCACTTTTTGATATCTCTCACAGAAAATGAGATACCGTAAAACCTCTAATAGAACGACACCC</canonical_amplicon>
		<polymorphic_amplicon>ATCACAAAATTCCCAAATAGCTGTGTTCTCTTTGAATTTGAAAAACAGAASATTCGTCCCCAAATTTCAAGATTTGATTTACCGTAAACACTCTAATAGAACGCCACCCGGACCGTCTAACTTTGAGCCTATATATCTCACTTCTCTTGGAAGATATCAAAAAGTTGTCTGATAAATGTTTATCATAATATCAGCAACATTTTACCAATTAACCACTTTTTGATATCTCTCACAGAAAATGAGATACCGTAAAACCTCTAATAGAACGACACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29823</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>5047</contig_pos>
        <strand></strand>
        <context>accgtaaaca[C/T]tctaatagaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAACAGAAGATTCGTCCCCAAATTTCAAGATTTGATTTACCGTAAACA</left_flank>
        <right_flank>TCTAATAGAACGCCACCCGGACCGTCTAACTTTGAGCCTATATATCTCAC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTACAAAGCATTTGAAAAGAAGTGGGCGCGTATTTCTGGAGTAGATCATGAGTGAGTCAGAAAAGTTTTTTCCAAAAATTATAAAACACCCTTTTATAACTTTTAGGGGTTTGATACAAGATTGTTTGGTCGTATCAACCGTTCCAAGCCAAGAAATCCTACACGACGTCGACTGTGAATATGGAGCCGGAATTCAACACGGCGTGGTTTGCGGATATAAACTTGAATAATTTTTTGTCCTTTTGTGTATCTGTTTGCCCTAATAAATGTTATCTTTTTTGTTTGAAAATTGGGTTCTCGAATTGCATAGATTTCAAACGATTCGATTCTATGATTTTACGTAGTTATAGTGATTTCTGAATTTTTGAAATTTTTTATGTAACGCCAACATTTCTGAGTTTACAAGGAATCACAAAATTCCCAAATAGCTGTGTTCTCTTTGAATTTGAAAAACAGAAGATTCGTCCCCAAATTTCAAGATTTGATTTACCGTAAACACTCTAATAGAACGCCACCCGGACCGTCTAACTTTGAGCCTATATATCTCACTTCTCTTGGAAGATATCAAAAAGTTGTCTGATAAATGTTTATCATAATATCAGCAACATTTTACCAATTAACCACTTTTTGATATCTCTCACAGAAAATGAGATACCGTAAAACCTCTAATAGAACGACACCCGGATCGTTTTTGATCGTTTTTGACACCCGGAAATTTCAAGATTTGATTTACCGTAGAGCTTTTACTTTTGAGCCTATATATCTCACTTCTCTTGGAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACACTTCACTAGTTAACCACTTTTTGATATCTTTCAGAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTACATGAGCACAAATTTGACGATTCGGGGGGCGTTCTATTATACTGTTTACGGTACATTTGAAACTGCAAA</canonical>
            <polymorphic>GGTACAAAGCATTTGAAAAGAAGTGGGCGCGTATTTCTGGAGTAGATCATGAGTGAGTCAGAAAAGTTTTTTCCAAAAATTATAAAACACCCTTTTATAACTTTTAGGGGTTTGATACAAGATTGTTTGGTCGTATCAACCGTTCCAAGCCAAGAAATCCTACACGACGTCGACTGTGAATATGGAGCCGGAATTCAACACGGCGTGGTTTGCGGATATAAACTTGAATAATTTTTTGTCCTTTTGTGTATCTGTTTGCCCTAATAAATGTTATCTTTTTTGTTTGAAAATTGGGTTCTCGAATTGCATAGATTTCAAACGATTCGATTCTATGATTTTACGTAGTTATAGTGATTTCTGAATTTTTGAAATTTTTTATGTAACGCCAACATTTCTGAGTTTACAAGGAATCACAAAATTCCCAAATAGCTGTGTTCTCTTTGAATTTGAAAAACAGAAGATTCGTCCCCAAATTTCAAGATTTGATTTACCGTAAACAYTCTAATAGAACGCCACCCGGACCGTCTAACTTTGAGCCTATATATCTCACTTCTCTTGGAAGATATCAAAAAGTTGTCTGATAAATGTTTATCATAATATCAGCAACATTTTACCAATTAACCACTTTTTGATATCTCTCACAGAAAATGAGATACCGTAAAACCTCTAATAGAACGACACCCGGATCGTTTTTGATCGTTTTTGACACCCGGAAATTTCAAGATTTGATTTACCGTAGAGCTTTTACTTTTGAGCCTATATATCTCACTTCTCTTGGAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACACTTCACTAGTTAACCACTTTTTGATATCTTTCAGAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTACATGAGCACAAATTTGACGATTCGGGGGGCGTTCTATTATACTGTTTACGGTACATTTGAAACTGCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>105 75 75 65 61 60 60 41 39 37 34 34 33 30 28 26 26 25 22 21 20 17 16 14 13 11 7 5</canonical_bands>
                <polymorphic_bands>105 81 75 75 61 60 60 41 39 37 34 34 33 30 28 26 26 25 22 21 20 17 14 13 11 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTGTGTTCTCTTTGAATTTG</pcr_primer_p1>
		<pcr_primer_p2>GTCGTTCTATTAGAGGTTTTACG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCTGTGTTCTCTTTGAATTTGAAAAACAGAAGATTCGTCCCCAAATTTCAAGATTTGATTTACCGTAAACACTCTAATAGAACGCCACCCGGACCGTCTAACTTTGAGCCTATATATCTCACTTCTCTTGGAAGATATCAAAAAGTTGTCTGATAAATGTTTATCATAATATCAGCAACATTTTACCAATTAACCACTTTTTGATATCTCTCACAGAAAATGAGATACCGTAAAACCTCTAATAGAACGAC</canonical_amplicon>
		<polymorphic_amplicon>GCTGTGTTCTCTTTGAATTTGAAAAACAGAAGATTCGTCCCCAAATTTCAAGATTTGATTTACCGTAAACAYTCTAATAGAACGCCACCCGGACCGTCTAACTTTGAGCCTATATATCTCACTTCTCTTGGAAGATATCAAAAAGTTGTCTGATAAATGTTTATCATAATATCAGCAACATTTTACCAATTAACCACTTTTTGATATCTCTCACAGAAAATGAGATACCGTAAAACCTCTAATAGAACGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29824</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>5074</contig_pos>
        <strand></strand>
        <context>ccggaccgtc[T/C]aactttgagc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAAGATTTGATTTACCGTAAACACTCTAATAGAACGCCACCCGGACCGTC</left_flank>
        <right_flank>AACTTTGAGCCTATATATCTCACTTCTCTTGGAAGATATCAAAAAGTTGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCGTATTTCTGGAGTAGATCATGAGTGAGTCAGAAAAGTTTTTTCCAAAAATTATAAAACACCCTTTTATAACTTTTAGGGGTTTGATACAAGATTGTTTGGTCGTATCAACCGTTCCAAGCCAAGAAATCCTACACGACGTCGACTGTGAATATGGAGCCGGAATTCAACACGGCGTGGTTTGCGGATATAAACTTGAATAATTTTTTGTCCTTTTGTGTATCTGTTTGCCCTAATAAATGTTATCTTTTTTGTTTGAAAATTGGGTTCTCGAATTGCATAGATTTCAAACGATTCGATTCTATGATTTTACGTAGTTATAGTGATTTCTGAATTTTTGAAATTTTTTATGTAACGCCAACATTTCTGAGTTTACAAGGAATCACAAAATTCCCAAATAGCTGTGTTCTCTTTGAATTTGAAAAACAGAAGATTCGTCCCCAAATTTCAAGATTTGATTTACCGTAAACACTCTAATAGAACGCCACCCGGACCGTCTAACTTTGAGCCTATATATCTCACTTCTCTTGGAAGATATCAAAAAGTTGTCTGATAAATGTTTATCATAATATCAGCAACATTTTACCAATTAACCACTTTTTGATATCTCTCACAGAAAATGAGATACCGTAAAACCTCTAATAGAACGACACCCGGATCGTTTTTGATCGTTTTTGACACCCGGAAATTTCAAGATTTGATTTACCGTAGAGCTTTTACTTTTGAGCCTATATATCTCACTTCTCTTGGAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACACTTCACTAGTTAACCACTTTTTGATATCTTTCAGAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTACATGAGCACAAATTTGACGATTCGGGGGGCGTTCTATTATACTGTTTACGGTACATTTGAAACTGCAAAACGGCAATGTTTAACAAGTTGTTCAAT</canonical>
            <polymorphic>CGCGTATTTCTGGAGTAGATCATGAGTGAGTCAGAAAAGTTTTTTCCAAAAATTATAAAACACCCTTTTATAACTTTTAGGGGTTTGATACAAGATTGTTTGGTCGTATCAACCGTTCCAAGCCAAGAAATCCTACACGACGTCGACTGTGAATATGGAGCCGGAATTCAACACGGCGTGGTTTGCGGATATAAACTTGAATAATTTTTTGTCCTTTTGTGTATCTGTTTGCCCTAATAAATGTTATCTTTTTTGTTTGAAAATTGGGTTCTCGAATTGCATAGATTTCAAACGATTCGATTCTATGATTTTACGTAGTTATAGTGATTTCTGAATTTTTGAAATTTTTTATGTAACGCCAACATTTCTGAGTTTACAAGGAATCACAAAATTCCCAAATAGCTGTGTTCTCTTTGAATTTGAAAAACAGAAGATTCGTCCCCAAATTTCAAGATTTGATTTACCGTAAACACTCTAATAGAACGCCACCCGGACCGTCYAACTTTGAGCCTATATATCTCACTTCTCTTGGAAGATATCAAAAAGTTGTCTGATAAATGTTTATCATAATATCAGCAACATTTTACCAATTAACCACTTTTTGATATCTCTCACAGAAAATGAGATACCGTAAAACCTCTAATAGAACGACACCCGGATCGTTTTTGATCGTTTTTGACACCCGGAAATTTCAAGATTTGATTTACCGTAGAGCTTTTACTTTTGAGCCTATATATCTCACTTCTCTTGGAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACACTTCACTAGTTAACCACTTTTTGATATCTTTCAGAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTACATGAGCACAAATTTGACGATTCGGGGGGCGTTCTATTATACTGTTTACGGTACATTTGAAACTGCAAAACGGCAATGTTTAACAAGTTGTTCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTGTGTTCTCTTTGAATTTG</pcr_primer_p1>
		<pcr_primer_p2>GTCGTTCTATTAGAGGTTTTACG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCTGTGTTCTCTTTGAATTTGAAAAACAGAAGATTCGTCCCCAAATTTCAAGATTTGATTTACCGTAAACACTCTAATAGAACGCCACCCGGACCGTCTAACTTTGAGCCTATATATCTCACTTCTCTTGGAAGATATCAAAAAGTTGTCTGATAAATGTTTATCATAATATCAGCAACATTTTACCAATTAACCACTTTTTGATATCTCTCACAGAAAATGAGATACCGTAAAACCTCTAATAGAACGAC</canonical_amplicon>
		<polymorphic_amplicon>GCTGTGTTCTCTTTGAATTTGAAAAACAGAAGATTCGTCCCCAAATTTCAAGATTTGATTTACCGTAAACACTCTAATAGAACGCCACCCGGACCGTCYAACTTTGAGCCTATATATCTCACTTCTCTTGGAAGATATCAAAAAGTTGTCTGATAAATGTTTATCATAATATCAGCAACATTTTACCAATTAACCACTTTTTGATATCTCTCACAGAAAATGAGATACCGTAAAACCTCTAATAGAACGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29825</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>5119</contig_pos>
        <strand></strand>
        <context>gatatcaaaa[A/C]gttgtctgat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCGTCTAACTTTGAGCCTATATATCTCACTTCTCTTGGAAGATATCAAAA</left_flank>
        <right_flank>GTTGTCTGATAAATGTTTATCATAATATCAGCAACATTTTACCAATTAAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAAAATTATAAAACACCCTTTTATAACTTTTAGGGGTTTGATACAAGATTGTTTGGTCGTATCAACCGTTCCAAGCCAAGAAATCCTACACGACGTCGACTGTGAATATGGAGCCGGAATTCAACACGGCGTGGTTTGCGGATATAAACTTGAATAATTTTTTGTCCTTTTGTGTATCTGTTTGCCCTAATAAATGTTATCTTTTTTGTTTGAAAATTGGGTTCTCGAATTGCATAGATTTCAAACGATTCGATTCTATGATTTTACGTAGTTATAGTGATTTCTGAATTTTTGAAATTTTTTATGTAACGCCAACATTTCTGAGTTTACAAGGAATCACAAAATTCCCAAATAGCTGTGTTCTCTTTGAATTTGAAAAACAGAAGATTCGTCCCCAAATTTCAAGATTTGATTTACCGTAAACACTCTAATAGAACGCCACCCGGACCGTCTAACTTTGAGCCTATATATCTCACTTCTCTTGGAAGATATCAAAAAGTTGTCTGATAAATGTTTATCATAATATCAGCAACATTTTACCAATTAACCACTTTTTGATATCTCTCACAGAAAATGAGATACCGTAAAACCTCTAATAGAACGACACCCGGATCGTTTTTGATCGTTTTTGACACCCGGAAATTTCAAGATTTGATTTACCGTAGAGCTTTTACTTTTGAGCCTATATATCTCACTTCTCTTGGAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACACTTCACTAGTTAACCACTTTTTGATATCTTTCAGAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTACATGAGCACAAATTTGACGATTCGGGGGGCGTTCTATTATACTGTTTACGGTACATTTGAAACTGCAAAACGGCAATGTTTAACAAGTTGTTCAATTCGTTCTTCTTCTCTAAGTTTGCTCAAGAAACAAGAAAGAATTTT</canonical>
            <polymorphic>CCAAAAATTATAAAACACCCTTTTATAACTTTTAGGGGTTTGATACAAGATTGTTTGGTCGTATCAACCGTTCCAAGCCAAGAAATCCTACACGACGTCGACTGTGAATATGGAGCCGGAATTCAACACGGCGTGGTTTGCGGATATAAACTTGAATAATTTTTTGTCCTTTTGTGTATCTGTTTGCCCTAATAAATGTTATCTTTTTTGTTTGAAAATTGGGTTCTCGAATTGCATAGATTTCAAACGATTCGATTCTATGATTTTACGTAGTTATAGTGATTTCTGAATTTTTGAAATTTTTTATGTAACGCCAACATTTCTGAGTTTACAAGGAATCACAAAATTCCCAAATAGCTGTGTTCTCTTTGAATTTGAAAAACAGAAGATTCGTCCCCAAATTTCAAGATTTGATTTACCGTAAACACTCTAATAGAACGCCACCCGGACCGTCTAACTTTGAGCCTATATATCTCACTTCTCTTGGAAGATATCAAAAMGTTGTCTGATAAATGTTTATCATAATATCAGCAACATTTTACCAATTAACCACTTTTTGATATCTCTCACAGAAAATGAGATACCGTAAAACCTCTAATAGAACGACACCCGGATCGTTTTTGATCGTTTTTGACACCCGGAAATTTCAAGATTTGATTTACCGTAGAGCTTTTACTTTTGAGCCTATATATCTCACTTCTCTTGGAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACACTTCACTAGTTAACCACTTTTTGATATCTTTCAGAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTACATGAGCACAAATTTGACGATTCGGGGGGCGTTCTATTATACTGTTTACGGTACATTTGAAACTGCAAAACGGCAATGTTTAACAAGTTGTTCAATTCGTTCTTCTTCTCTAAGTTTGCTCAAGAAACAAGAAAGAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTGTGTTCTCTTTGAATTTG</pcr_primer_p1>
		<pcr_primer_p2>GTCGTTCTATTAGAGGTTTTACG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCTGTGTTCTCTTTGAATTTGAAAAACAGAAGATTCGTCCCCAAATTTCAAGATTTGATTTACCGTAAACACTCTAATAGAACGCCACCCGGACCGTCTAACTTTGAGCCTATATATCTCACTTCTCTTGGAAGATATCAAAAAGTTGTCTGATAAATGTTTATCATAATATCAGCAACATTTTACCAATTAACCACTTTTTGATATCTCTCACAGAAAATGAGATACCGTAAAACCTCTAATAGAACGAC</canonical_amplicon>
		<polymorphic_amplicon>GCTGTGTTCTCTTTGAATTTGAAAAACAGAAGATTCGTCCCCAAATTTCAAGATTTGATTTACCGTAAACACTCTAATAGAACGCCACCCGGACCGTCTAACTTTGAGCCTATATATCTCACTTCTCTTGGAAGATATCAAAAMGTTGTCTGATAAATGTTTATCATAATATCAGCAACATTTTACCAATTAACCACTTTTTGATATCTCTCACAGAAAATGAGATACCGTAAAACCTCTAATAGAACGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29826</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>63470</contig_pos>
        <strand>+</strand>
        <context>ATGAAATAGA[A/T]TTTTTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGTTTTAGGGATCTGAAAATTTGGGAAATACAATAATCTATGAAATAGA</left_flank>
        <right_flank>TTTTTTTTTGAATTCTGAAAATTGCCAATTTCTTTTTTCATAGACCAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAACTTGGCATTTTGGGGTTTTTGGGTTGATATGTCAACTTTCGAACCTTAAAACTTGAAAATCTAAAAATTCAAGAATCTCAGAATCTCCGAATCTTCCAGAAAAATCAAAAAGTACACGAGTAAAGTACATAAATTCTGGAGTACAGGGGGTGTAAAACTAAAAGTAGGGAGGAGAAATAAGAAAGGGAGAGATAATTAGTATCTTGGAAAAAAGTGAGAAAAACGACACACACTGTACTACAGAAAATGATGTTCTTTTTCCCTCAAAGAACTGGATCTCTTCTCCTCTAGGATTCAGAAGACGTCACGTCTTCTGAATATGAATCCAGAATTCTGAACCTAGAAATCCCTAATGGTTGGGTTGCGTAACAGTTGGAGAAAGTTCCAGAAAAGGAAAGTGGGGAAGGGAAAAGTTTTTGGAAAGTTTGAAAAGGAAAGAAACTTTTTGTTTTAGGGATCTGAAAATTTGGGAAATACAATAATCTATGAAATAGATTTTTTTTTTGAATTCTGAAAATTGCCAATTTCTTTTTTCATAGACCAATCAAAACTAGTATAAATGAGTTTTTCTATGTTTAAGGTTGTCAAAAAATAGATTTCCGATAAAAAGTTGGTTAGATTAGAAAGTCTGGAATTCGTTAATCAAAAAATTCTGAAAATCTTGGACTTCAGAATCTCAAGATCTTGATAAATCAGTACTCAAAAGGTTTAAAACTTTAAAATGAGTATAAACACGATATATTTTAGCCCATTTCAATTTTCTCTCAAATTTTGGTATGCGCCTTTAAGAAATCGCGGCGAGACCCAAACTTTTTCGTAAAATCTATTGCATGTTTATACTCATTTTGAAGCTGAAAATGTGTTTATTCCAAATCTGTTTAAAAAAAGTTGAATCGAACAAAAATTTTAAAAGTTAGGATTAAAACAAATTTCAATGTTCTGAAATGTTGAACTCAGATTTTGAAAAGTCCATAACTTTGTTCACTTTCATCCGTT</canonical>
            <polymorphic>TCAACTTGGCATTTTGGGGTTTTTGGGTTGATATGTCAACTTTCGAACCTTAAAACTTGAAAATCTAAAAATTCAAGAATCTCAGAATCTCCGAATCTTCCAGAAAAATCAAAAAGTACACGAGTAAAGTACATAAATTCTGGAGTACAGGGGGTGTAAAACTAAAAGTAGGGAGGAGAAATAAGAAAGGGAGAGATAATTAGTATCTTGGAAAAAAGTGAGAAAAACGACACACACTGTACTACAGAAAATGATGTTCTTTTTCCCTCAAAGAACTGGATCTCTTCTCCTCTAGGATTCAGAAGACGTCACGTCTTCTGAATATGAATCCAGAATTCTGAACCTAGAAATCCCTAATGGTTGGGTTGCGTAACAGTTGGAGAAAGTTCCAGAAAAGGAAAGTGGGGAAGGGAAAAGTTTTTGGAAAGTTTGAAAAGGAAAGAAACTTTTTGTTTTAGGGATCTGAAAATTTGGGAAATACAATAATCTATGAAATAGAWTTTTTTTTTGAATTCTGAAAATTGCCAATTTCTTTTTTCATAGACCAATCAAAACTAGTATAAATGAGTTTTTCTATGTTTAAGGTTGTCAAAAAATAGATTTCCGATAAAAAGTTGGTTAGATTAGAAAGTCTGGAATTCGTTAATCAAAAAATTCTGAAAATCTTGGACTTCAGAATCTCAAGATCTTGATAAATCAGTACTCAAAAGGTTTAAAACTTTAAAATGAGTATAAACACGATATATTTTAGCCCATTTCAATTTTCTCTCAAATTTTGGTATGCGCCTTTAAGAAATCGCGGCGAGACCCAAACTTTTTCGTAAAATCTATTGCATGTTTATACTCATTTTGAAGCTGAAAATGTGTTTATTCCAAATCTGTTTAAAAAAAGTTGAATCGAACAAAAATTTTAAAAGTTAGGATTAAAACAAATTTCAATGTTCTGAAATGTTGAACTCAGATTTTGAAAAGTCCATAACTTTGTTCACTTTCATCCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAGAAACTTTTTGTTTTAGG</pcr_primer_p1>
		<pcr_primer_p2>TTGAGATTCTGAAGTCCAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGAAAGAAACTTTTTGTTTTAGGGATCTGAAAATTTGGGAAATACAATAATCTATGAAATAGATTTTTTTTTTGAATTCTGAAAATTGCCAATTTCTTTTTTCATAGACCAATCAAAACTAGTATAAATGAGTTTTTCTATGTTTAAGGTTGTCAAAAAATAGATTTCCGATAAAAAGTTGGTTAGATTAGAAAGTCTGGAATTCGTTAATCAAAAAATTCTGAAAATCTTGGACTTCAGAATCTCAA</canonical_amplicon>
		<polymorphic_amplicon>GGAAAGAAACTTTTTGTTTTAGGGATCTGAAAATTTGGGAAATACAATAATCTATGAAATAGAWTTTTTTTTTGAATTCTGAAAATTGCCAATTTCTTTTTTCATAGACCAATCAAAACTAGTATAAATGAGTTTTTCTATGTTTAAGGTTGTCAAAAAATAGATTTCCGATAAAAAGTTGGTTAGATTAGAAAGTCTGGAATTCGTTAATCAAAAAATTCTGAAAATCTTGGACTTCAGAATCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29827</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>94283</contig_pos>
        <strand>+</strand>
        <context>TTCAATTCTT[C/T]CCCTTTGATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCCCGCAAAAGGAAACAGAGAGCATCTCTCTCGATCTGTTCAATTCTT</left_flank>
        <right_flank>CCCTTTGATCTTGCCGCCACCGAAAATTCTCGGCATGGTGATGCGCGCGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGGAACCAACGAGATATTCAAGTGAAGAACAACGATAAATTGAAATCTAGGAAATTCAGAATCTCTAGCTTCCATATTTCGGAAATTTCAGTATTTTCAGAATCTTATTTTAGAATCTTAGAATCCTAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGCGTCTCAAAACCTCAGGACCTCAGGATCCGGAAATCTCAGAACCTCAGAATCCTAGAATAACAGAATCTCGAAATTTCAAACTTTCAAATTCCCTCCTAACCGGTCCCCCCAAAAACCAACAACAATATCTTCCTTCCCAAATTTACCGCCAAACGGTCCTTCCATGTCCAAATGCTGGTAGTAAATGTATCATCTTTTTGCCTCTTTTCTCGGCTGCCGATTTTACAGCCATACGGGACCTTCTCTTCTTTCAAAACTATAAATCAGTTCGTGTTCCTGTCTCTTTCTCCCGCAAAAGGAAACAGAGAGCATCTCTCTCGATCTGTTCAATTCTTCCCCTTTGATCTTGCCGCCACCGAAAATTCTCGGCATGGTGATGCGCGCGGAGAGACGCAGAGAAAGGAGGAGGTGGAGAGGAGGGGTACTGTAGAAATTTGAAAATCTAGATTCTTTTTATTTGAAGTGCTTTTCTGGTTTGAACCTATTTTAAAGGGACAGCGCTTCTAAATAAAAAAAAACCAATACAAATTTTGGAAAATTTGAATTTTCATGAAAATTCATTTGGCTAGTTAATACCTTAAAACTTGTCGAAGTTCTTCGAACATTTTCATTTATACTAAAAAAATAGAGTTTTCTTTTCGTAGTTGACAGTTTTTTTGTAAAATTGACAGCTGAAGAGATATGCCACGTGGAAGAGCACGTCCCTCAACGGTCTTGCGTTTGGAAACGAGGCGCGCGCTCTTCCAGTTACCGTATCTCCTTAAGGCTTAATTTTACAAGAAATCTATCAACTACAAAAATAAAGCTCTAATTTTGTTTTATACAATTTCAAAAAG</canonical>
            <polymorphic>CCAGGAACCAACGAGATATTCAAGTGAAGAACAACGATAAATTGAAATCTAGGAAATTCAGAATCTCTAGCTTCCATATTTCGGAAATTTCAGTATTTTCAGAATCTTATTTTAGAATCTTAGAATCCTAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGCGTCTCAAAACCTCAGGACCTCAGGATCCGGAAATCTCAGAACCTCAGAATCCTAGAATAACAGAATCTCGAAATTTCAAACTTTCAAATTCCCTCCTAACCGGTCCCCCCAAAAACCAACAACAATATCTTCCTTCCCAAATTTACCGCCAAACGGTCCTTCCATGTCCAAATGCTGGTAGTAAATGTATCATCTTTTTGCCTCTTTTCTCGGCTGCCGATTTTACAGCCATACGGGACCTTCTCTTCTTTCAAAACTATAAATCAGTTCGTGTTCCTGTCTCTTTCTCCCGCAAAAGGAAACAGAGAGCATCTCTCTCGATCTGTTCAATTCTTYCCCTTTGATCTTGCCGCCACCGAAAATTCTCGGCATGGTGATGCGCGCGGAGAGACGCAGAGAAAGGAGGAGGTGGAGAGGAGGGGTACTGTAGAAATTTGAAAATCTAGATTCTTTTTATTTGAAGTGCTTTTCTGGTTTGAACCTATTTTAAAGGGACAGCGCTTCTAAATAAAAAAAAACCAATACAAATTTTGGAAAATTTGAATTTTCATGAAAATTCATTTGGCTAGTTAATACCTTAAAACTTGTCGAAGTTCTTCGAACATTTTCATTTATACTAAAAAAATAGAGTTTTCTTTTCGTAGTTGACAGTTTTTTTGTAAAATTGACAGCTGAAGAGATATGCCACGTGGAAGAGCACGTCCCTCAACGGTCTTGCGTTTGGAAACGAGGCGCGCGCTCTTCCAGTTACCGTATCTCCTTAAGGCTTAATTTTACAAGAAATCTATCAACTACAAAAATAAAGCTCTAATTTTGTTTTATACAATTTCAAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTATCATCTTTTTGCCTCTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTCTACAGTACCCCTCCTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGTATCATCTTTTTGCCTCTTTTCTCGGCTGCCGATTTTACAGCCATACGGGACCTTCTCTTCTTTCAAAACTATAAATCAGTTCGTGTTCCTGTCTCTTTCTCCCGCAAAAGGAAACAGAGAGCATCTCTCTCGATCTGTTCAATTCTTCCCCTTTGATCTTGCCGCCACCGAAAATTCTCGGCATGGTGATGCGCGCGGAGAGACGCAGAGAAAGGAGGAGGTGGAGAGGAGGGGTACTGTAGAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATGTATCATCTTTTTGCCTCTTTTCTCGGCTGCCGATTTTACAGCCATACGGGACCTTCTCTTCTTTCAAAACTATAAATCAGTTCGTGTTCCTGTCTCTTTCTCCCGCAAAAGGAAACAGAGAGCATCTCTCTCGATCTGTTCAATTCTTYCCCTTTGATCTTGCCGCCACCGAAAATTCTCGGCATGGTGATGCGCGCGGAGAGACGCAGAGAAAGGAGGAGGTGGAGAGGAGGGGTACTGTAGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29828</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>94394</contig_pos>
        <strand>+</strand>
        <context>GAAAATCTAG[A/C]TTCTTTTTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAAAGGAGGAGGTGGAGAGGAGGGGTACTGTAGAAATTTGAAAATCTAG</left_flank>
        <right_flank>TTCTTTTTATTTGAAGTGCTTTTCTGGTTTGAACCTATTTTAAAGGGACA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAGAATCTTAGAATCCTAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGCGTCTCAAAACCTCAGGACCTCAGGATCCGGAAATCTCAGAACCTCAGAATCCTAGAATAACAGAATCTCGAAATTTCAAACTTTCAAATTCCCTCCTAACCGGTCCCCCCAAAAACCAACAACAATATCTTCCTTCCCAAATTTACCGCCAAACGGTCCTTCCATGTCCAAATGCTGGTAGTAAATGTATCATCTTTTTGCCTCTTTTCTCGGCTGCCGATTTTACAGCCATACGGGACCTTCTCTTCTTTCAAAACTATAAATCAGTTCGTGTTCCTGTCTCTTTCTCCCGCAAAAGGAAACAGAGAGCATCTCTCTCGATCTGTTCAATTCTTCCCCTTTGATCTTGCCGCCACCGAAAATTCTCGGCATGGTGATGCGCGCGGAGAGACGCAGAGAAAGGAGGAGGTGGAGAGGAGGGGTACTGTAGAAATTTGAAAATCTAGATTCTTTTTATTTGAAGTGCTTTTCTGGTTTGAACCTATTTTAAAGGGACAGCGCTTCTAAATAAAAAAAAACCAATACAAATTTTGGAAAATTTGAATTTTCATGAAAATTCATTTGGCTAGTTAATACCTTAAAACTTGTCGAAGTTCTTCGAACATTTTCATTTATACTAAAAAAATAGAGTTTTCTTTTCGTAGTTGACAGTTTTTTTGTAAAATTGACAGCTGAAGAGATATGCCACGTGGAAGAGCACGTCCCTCAACGGTCTTGCGTTTGGAAACGAGGCGCGCGCTCTTCCAGTTACCGTATCTCCTTAAGGCTTAATTTTACAAGAAATCTATCAACTACAAAAATAAAGCTCTAATTTTGTTTTATACAATTTCAAAAAGTTTCACAAAATTAAAAAATTTCGAAATCCTTTTGTAGGCGTTCAAATATATAACAGTTTTGAATCACTTAGAGGAGTGCTCCTAACTTTGACTCAATTTATCTCGGTTCCT</canonical>
            <polymorphic>TTAGAATCTTAGAATCCTAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGCGTCTCAAAACCTCAGGACCTCAGGATCCGGAAATCTCAGAACCTCAGAATCCTAGAATAACAGAATCTCGAAATTTCAAACTTTCAAATTCCCTCCTAACCGGTCCCCCCAAAAACCAACAACAATATCTTCCTTCCCAAATTTACCGCCAAACGGTCCTTCCATGTCCAAATGCTGGTAGTAAATGTATCATCTTTTTGCCTCTTTTCTCGGCTGCCGATTTTACAGCCATACGGGACCTTCTCTTCTTTCAAAACTATAAATCAGTTCGTGTTCCTGTCTCTTTCTCCCGCAAAAGGAAACAGAGAGCATCTCTCTCGATCTGTTCAATTCTTCCCCTTTGATCTTGCCGCCACCGAAAATTCTCGGCATGGTGATGCGCGCGGAGAGACGCAGAGAAAGGAGGAGGTGGAGAGGAGGGGTACTGTAGAAATTTGAAAATCTAGMTTCTTTTTATTTGAAGTGCTTTTCTGGTTTGAACCTATTTTAAAGGGACAGCGCTTCTAAATAAAAAAAAACCAATACAAATTTTGGAAAATTTGAATTTTCATGAAAATTCATTTGGCTAGTTAATACCTTAAAACTTGTCGAAGTTCTTCGAACATTTTCATTTATACTAAAAAAATAGAGTTTTCTTTTCGTAGTTGACAGTTTTTTTGTAAAATTGACAGCTGAAGAGATATGCCACGTGGAAGAGCACGTCCCTCAACGGTCTTGCGTTTGGAAACGAGGCGCGCGCTCTTCCAGTTACCGTATCTCCTTAAGGCTTAATTTTACAAGAAATCTATCAACTACAAAAATAAAGCTCTAATTTTGTTTTATACAATTTCAAAAAGTTTCACAAAATTAAAAAATTTCGAAATCCTTTTGTAGGCGTTCAAATATATAACAGTTTTGAATCACTTAGAGGAGTGCTCCTAACTTTGACTCAATTTATCTCGGTTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>451 383 56 29 21 16 8 8 8 8 8 4</canonical_bands>
                <polymorphic_bands>834 56 29 21 16 8 8 8 8 8 4</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>398 250 126 106 66 40 8 6</canonical_bands>
                <polymorphic_bands>398 250 232 66 40 8 6</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>451 383 56 50 16 8 8 8 8 8 4</canonical_bands>
                <polymorphic_bands>834 56 50 16 8 8 8 8 8 4</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATAAATCAGTTCGTGTTCCTGT</pcr_primer_p1>
		<pcr_primer_p2>GCTGTCCCTTTAAAATAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TATAAATCAGTTCGTGTTCCTGTCTCTTTCTCCCGCAAAAGGAAACAGAGAGCATCTCTCTCGATCTGTTCAATTCTTCCCCTTTGATCTTGCCGCCACCGAAAATTCTCGGCATGGTGATGCGCGCGGAGAGACGCAGAGAAAGGAGGAGGTGGAGAGGAGGGGTACTGTAGAAATTTGAAAATCTAGATTCTTTTTATTTGAAGTGCTTTTCTGGTTTGAACCTATTTTAAAGGGACAGC</canonical_amplicon>
		<polymorphic_amplicon>TATAAATCAGTTCGTGTTCCTGTCTCTTTCTCCCGCAAAAGGAAACAGAGAGCATCTCTCTCGATCTGTTCAATTCTTCCCCTTTGATCTTGCCGCCACCGAAAATTCTCGGCATGGTGATGCGCGCGGAGAGACGCAGAGAAAGGAGGAGGTGGAGAGGAGGGGTACTGTAGAAATTTGAAAATCTAGMTTCTTTTTATTTGAAGTGCTTTTCTGGTTTGAACCTATTTTAAAGGGACAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29829</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>94457</contig_pos>
        <strand>+</strand>
        <context>GCTTCTAAAT[A/T]AAAAAAAACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAGTGCTTTTCTGGTTTGAACCTATTTTAAAGGGACAGCGCTTCTAAAT</left_flank>
        <right_flank>AAAAAAAACCAATACAAATTTTGGAAAATTTGAATTTTCATGAAAATTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAGGACCTCAGGATCCGGAAATCTCAGAACCTCAGAATCCTAGAATAACAGAATCTCGAAATTTCAAACTTTCAAATTCCCTCCTAACCGGTCCCCCCAAAAACCAACAACAATATCTTCCTTCCCAAATTTACCGCCAAACGGTCCTTCCATGTCCAAATGCTGGTAGTAAATGTATCATCTTTTTGCCTCTTTTCTCGGCTGCCGATTTTACAGCCATACGGGACCTTCTCTTCTTTCAAAACTATAAATCAGTTCGTGTTCCTGTCTCTTTCTCCCGCAAAAGGAAACAGAGAGCATCTCTCTCGATCTGTTCAATTCTTCCCCTTTGATCTTGCCGCCACCGAAAATTCTCGGCATGGTGATGCGCGCGGAGAGACGCAGAGAAAGGAGGAGGTGGAGAGGAGGGGTACTGTAGAAATTTGAAAATCTAGATTCTTTTTATTTGAAGTGCTTTTCTGGTTTGAACCTATTTTAAAGGGACAGCGCTTCTAAATAAAAAAAAACCAATACAAATTTTGGAAAATTTGAATTTTCATGAAAATTCATTTGGCTAGTTAATACCTTAAAACTTGTCGAAGTTCTTCGAACATTTTCATTTATACTAAAAAAATAGAGTTTTCTTTTCGTAGTTGACAGTTTTTTTGTAAAATTGACAGCTGAAGAGATATGCCACGTGGAAGAGCACGTCCCTCAACGGTCTTGCGTTTGGAAACGAGGCGCGCGCTCTTCCAGTTACCGTATCTCCTTAAGGCTTAATTTTACAAGAAATCTATCAACTACAAAAATAAAGCTCTAATTTTGTTTTATACAATTTCAAAAAGTTTCACAAAATTAAAAAATTTCGAAATCCTTTTGTAGGCGTTCAAATATATAACAGTTTTGAATCACTTAGAGGAGTGCTCCTAACTTTGACTCAATTTATCTCGGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTGGTAAAACATTAAACATTTTATGGGCTATACTTTGT</canonical>
            <polymorphic>CTCAGGACCTCAGGATCCGGAAATCTCAGAACCTCAGAATCCTAGAATAACAGAATCTCGAAATTTCAAACTTTCAAATTCCCTCCTAACCGGTCCCCCCAAAAACCAACAACAATATCTTCCTTCCCAAATTTACCGCCAAACGGTCCTTCCATGTCCAAATGCTGGTAGTAAATGTATCATCTTTTTGCCTCTTTTCTCGGCTGCCGATTTTACAGCCATACGGGACCTTCTCTTCTTTCAAAACTATAAATCAGTTCGTGTTCCTGTCTCTTTCTCCCGCAAAAGGAAACAGAGAGCATCTCTCTCGATCTGTTCAATTCTTCCCCTTTGATCTTGCCGCCACCGAAAATTCTCGGCATGGTGATGCGCGCGGAGAGACGCAGAGAAAGGAGGAGGTGGAGAGGAGGGGTACTGTAGAAATTTGAAAATCTAGATTCTTTTTATTTGAAGTGCTTTTCTGGTTTGAACCTATTTTAAAGGGACAGCGCTTCTAAATWAAAAAAAACCAATACAAATTTTGGAAAATTTGAATTTTCATGAAAATTCATTTGGCTAGTTAATACCTTAAAACTTGTCGAAGTTCTTCGAACATTTTCATTTATACTAAAAAAATAGAGTTTTCTTTTCGTAGTTGACAGTTTTTTTGTAAAATTGACAGCTGAAGAGATATGCCACGTGGAAGAGCACGTCCCTCAACGGTCTTGCGTTTGGAAACGAGGCGCGCGCTCTTCCAGTTACCGTATCTCCTTAAGGCTTAATTTTACAAGAAATCTATCAACTACAAAAATAAAGCTCTAATTTTGTTTTATACAATTTCAAAAAGTTTCACAAAATTAAAAAATTTCGAAATCCTTTTGTAGGCGTTCAAATATATAACAGTTTTGAATCACTTAGAGGAGTGCTCCTAACTTTGACTCAATTTATCTCGGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTGGTAAAACATTAAACATTTTATGGGCTATACTTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTTGAAGTGCTTTTCTGGT</pcr_primer_p1>
		<pcr_primer_p2>TCCTCTAAGTGATTCAAAACTGT</pcr_primer_p2>
		<pcr_amplicon_size>458</pcr_amplicon_size>
		<canonical_amplicon>TTATTTGAAGTGCTTTTCTGGTTTGAACCTATTTTAAAGGGACAGCGCTTCTAAATAAAAAAAAACCAATACAAATTTTGGAAAATTTGAATTTTCATGAAAATTCATTTGGCTAGTTAATACCTTAAAACTTGTCGAAGTTCTTCGAACATTTTCATTTATACTAAAAAAATAGAGTTTTCTTTTCGTAGTTGACAGTTTTTTTGTAAAATTGACAGCTGAAGAGATATGCCACGTGGAAGAGCACGTCCCTCAACGGTCTTGCGTTTGGAAACGAGGCGCGCGCTCTTCCAGTTACCGTATCTCCTTAAGGCTTAATTTTACAAGAAATCTATCAACTACAAAAATAAAGCTCTAATTTTGTTTTATACAATTTCAAAAAGTTTCACAAAATTAAAAAATTTCGAAATCCTTTTGTAGGCGTTCAAATATATAACAGTTTTGAATCACTTAGAGGA</canonical_amplicon>
		<polymorphic_amplicon>TTATTTGAAGTGCTTTTCTGGTTTGAACCTATTTTAAAGGGACAGCGCTTCTAAATWAAAAAAAACCAATACAAATTTTGGAAAATTTGAATTTTCATGAAAATTCATTTGGCTAGTTAATACCTTAAAACTTGTCGAAGTTCTTCGAACATTTTCATTTATACTAAAAAAATAGAGTTTTCTTTTCGTAGTTGACAGTTTTTTTGTAAAATTGACAGCTGAAGAGATATGCCACGTGGAAGAGCACGTCCCTCAACGGTCTTGCGTTTGGAAACGAGGCGCGCGCTCTTCCAGTTACCGTATCTCCTTAAGGCTTAATTTTACAAGAAATCTATCAACTACAAAAATAAAGCTCTAATTTTGTTTTATACAATTTCAAAAAGTTTCACAAAATTAAAAAATTTCGAAATCCTTTTGTAGGCGTTCAAATATATAACAGTTTTGAATCACTTAGAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29830</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>94485</contig_pos>
        <strand></strand>
        <context>ATTTTGGAAA[A/T]TTTGAATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAAGGGACAGCGCTTCTAAATAAAAAAAAACCAATACAAATTTTGGAAA</left_flank>
        <right_flank>TTTGAATTTTCATGAAAATTCATTTGGCTAGTTAATACCTTAAAACTTGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACCTCAGAATCCTAGAATAACAGAATCTCGAAATTTCAAACTTTCAAATTCCCTCCTAACCGGTCCCCCCAAAAACCAACAACAATATCTTCCTTCCCAAATTTACCGCCAAACGGTCCTTCCATGTCCAAATGCTGGTAGTAAATGTATCATCTTTTTGCCTCTTTTCTCGGCTGCCGATTTTACAGCCATACGGGACCTTCTCTTCTTTCAAAACTATAAATCAGTTCGTGTTCCTGTCTCTTTCTCCCGCAAAAGGAAACAGAGAGCATCTCTCTCGATCTGTTCAATTCTTCCCCTTTGATCTTGCCGCCACCGAAAATTCTCGGCATGGTGATGCGCGCGGAGAGACGCAGAGAAAGGAGGAGGTGGAGAGGAGGGGTACTGTAGAAATTTGAAAATCTAGATTCTTTTTATTTGAAGTGCTTTTCTGGTTTGAACCTATTTTAAAGGGACAGCGCTTCTAAATAAAAAAAAACCAATACAAATTTTGGAAAATTTGAATTTTCATGAAAATTCATTTGGCTAGTTAATACCTTAAAACTTGTCGAAGTTCTTCGAACATTTTCATTTATACTAAAAAAATAGAGTTTTCTTTTCGTAGTTGACAGTTTTTTTGTAAAATTGACAGCTGAAGAGATATGCCACGTGGAAGAGCACGTCCCTCAACGGTCTTGCGTTTGGAAACGAGGCGCGCGCTCTTCCAGTTACCGTATCTCCTTAAGGCTTAATTTTACAAGAAATCTATCAACTACAAAAATAAAGCTCTAATTTTGTTTTATACAATTTCAAAAAGTTTCACAAAATTAAAAAATTTCGAAATCCTTTTGTAGGCGTTCAAATATATAACAGTTTTGAATCACTTAGAGGAGTGCTCCTAACTTTGACTCAATTTATCTCGGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTGGTAAAACATTAAACATTTTATGGGCTATACTTTGTTAATTGACAAATTTTTTATACCTCTTTC</canonical>
            <polymorphic>GAACCTCAGAATCCTAGAATAACAGAATCTCGAAATTTCAAACTTTCAAATTCCCTCCTAACCGGTCCCCCCAAAAACCAACAACAATATCTTCCTTCCCAAATTTACCGCCAAACGGTCCTTCCATGTCCAAATGCTGGTAGTAAATGTATCATCTTTTTGCCTCTTTTCTCGGCTGCCGATTTTACAGCCATACGGGACCTTCTCTTCTTTCAAAACTATAAATCAGTTCGTGTTCCTGTCTCTTTCTCCCGCAAAAGGAAACAGAGAGCATCTCTCTCGATCTGTTCAATTCTTCCCCTTTGATCTTGCCGCCACCGAAAATTCTCGGCATGGTGATGCGCGCGGAGAGACGCAGAGAAAGGAGGAGGTGGAGAGGAGGGGTACTGTAGAAATTTGAAAATCTAGATTCTTTTTATTTGAAGTGCTTTTCTGGTTTGAACCTATTTTAAAGGGACAGCGCTTCTAAATAAAAAAAAACCAATACAAATTTTGGAAAWTTTGAATTTTCATGAAAATTCATTTGGCTAGTTAATACCTTAAAACTTGTCGAAGTTCTTCGAACATTTTCATTTATACTAAAAAAATAGAGTTTTCTTTTCGTAGTTGACAGTTTTTTTGTAAAATTGACAGCTGAAGAGATATGCCACGTGGAAGAGCACGTCCCTCAACGGTCTTGCGTTTGGAAACGAGGCGCGCGCTCTTCCAGTTACCGTATCTCCTTAAGGCTTAATTTTACAAGAAATCTATCAACTACAAAAATAAAGCTCTAATTTTGTTTTATACAATTTCAAAAAGTTTCACAAAATTAAAAAATTTCGAAATCCTTTTGTAGGCGTTCAAATATATAACAGTTTTGAATCACTTAGAGGAGTGCTCCTAACTTTGACTCAATTTATCTCGGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTGGTAAAACATTAAACATTTTATGGGCTATACTTTGTTAATTGACAAATTTTTTATACCTCTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>298 221 167 95 71 53 33 19 15 12 10 6</canonical_bands>
                <polymorphic_bands>298 221 167 95 71 53 33 19 16 15 12</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>189 108 107 95 81 78 71 53 40 33 32 20 19 15 15 12 10 8 8 6</canonical_bands>
                <polymorphic_bands>189 108 107 95 81 78 71 53 40 33 32 20 19 16 15 15 12 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAACCTATTTTAAAGGGACAG</pcr_primer_p1>
		<pcr_primer_p2>CTCCTCTAAGTGATTCAAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>436</pcr_amplicon_size>
		<canonical_amplicon>TGAACCTATTTTAAAGGGACAGCGCTTCTAAATAAAAAAAAACCAATACAAATTTTGGAAAATTTGAATTTTCATGAAAATTCATTTGGCTAGTTAATACCTTAAAACTTGTCGAAGTTCTTCGAACATTTTCATTTATACTAAAAAAATAGAGTTTTCTTTTCGTAGTTGACAGTTTTTTTGTAAAATTGACAGCTGAAGAGATATGCCACGTGGAAGAGCACGTCCCTCAACGGTCTTGCGTTTGGAAACGAGGCGCGCGCTCTTCCAGTTACCGTATCTCCTTAAGGCTTAATTTTACAAGAAATCTATCAACTACAAAAATAAAGCTCTAATTTTGTTTTATACAATTTCAAAAAGTTTCACAAAATTAAAAAATTTCGAAATCCTTTTGTAGGCGTTCAAATATATAACAGTTTTGAATCACTTAGAGGAG</canonical_amplicon>
		<polymorphic_amplicon>TGAACCTATTTTAAAGGGACAGCGCTTCTAAATAAAAAAAAACCAATACAAATTTTGGAAAWTTTGAATTTTCATGAAAATTCATTTGGCTAGTTAATACCTTAAAACTTGTCGAAGTTCTTCGAACATTTTCATTTATACTAAAAAAATAGAGTTTTCTTTTCGTAGTTGACAGTTTTTTTGTAAAATTGACAGCTGAAGAGATATGCCACGTGGAAGAGCACGTCCCTCAACGGTCTTGCGTTTGGAAACGAGGCGCGCGCTCTTCCAGTTACCGTATCTCCTTAAGGCTTAATTTTACAAGAAATCTATCAACTACAAAAATAAAGCTCTAATTTTGTTTTATACAATTTCAAAAAGTTTCACAAAATTAAAAAATTTCGAAATCCTTTTGTAGGCGTTCAAATATATAACAGTTTTGAATCACTTAGAGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29831</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>94556</contig_pos>
        <strand></strand>
        <context>cgaacatttt[C/T]atttatacta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATTTGGCTAGTTAATACCTTAAAACTTGTCGAAGTTCTTCGAACATTTT</left_flank>
        <right_flank>ATTTATACTAAAAAAATAGAGTTTTCTTTTCGTAGTTGACAGTTTTTTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAAACCAACAACAATATCTTCCTTCCCAAATTTACCGCCAAACGGTCCTTCCATGTCCAAATGCTGGTAGTAAATGTATCATCTTTTTGCCTCTTTTCTCGGCTGCCGATTTTACAGCCATACGGGACCTTCTCTTCTTTCAAAACTATAAATCAGTTCGTGTTCCTGTCTCTTTCTCCCGCAAAAGGAAACAGAGAGCATCTCTCTCGATCTGTTCAATTCTTCCCCTTTGATCTTGCCGCCACCGAAAATTCTCGGCATGGTGATGCGCGCGGAGAGACGCAGAGAAAGGAGGAGGTGGAGAGGAGGGGTACTGTAGAAATTTGAAAATCTAGATTCTTTTTATTTGAAGTGCTTTTCTGGTTTGAACCTATTTTAAAGGGACAGCGCTTCTAAATAAAAAAAAACCAATACAAATTTTGGAAAATTTGAATTTTCATGAAAATTCATTTGGCTAGTTAATACCTTAAAACTTGTCGAAGTTCTTCGAACATTTTCATTTATACTAAAAAAATAGAGTTTTCTTTTCGTAGTTGACAGTTTTTTTGTAAAATTGACAGCTGAAGAGATATGCCACGTGGAAGAGCACGTCCCTCAACGGTCTTGCGTTTGGAAACGAGGCGCGCGCTCTTCCAGTTACCGTATCTCCTTAAGGCTTAATTTTACAAGAAATCTATCAACTACAAAAATAAAGCTCTAATTTTGTTTTATACAATTTCAAAAAGTTTCACAAAATTAAAAAATTTCGAAATCCTTTTGTAGGCGTTCAAATATATAACAGTTTTGAATCACTTAGAGGAGTGCTCCTAACTTTGACTCAATTTATCTCGGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTGGTAAAACATTAAACATTTTATGGGCTATACTTTGTTAATTGACAAATTTTTTATACCTCTTTCAGAAGCCGAGATAAATTTAGTTGAAATTAAGGGTAAATTGAGGGGTTGGGGGCATTTGAGGTTTTACGATA</canonical>
            <polymorphic>CAAAAACCAACAACAATATCTTCCTTCCCAAATTTACCGCCAAACGGTCCTTCCATGTCCAAATGCTGGTAGTAAATGTATCATCTTTTTGCCTCTTTTCTCGGCTGCCGATTTTACAGCCATACGGGACCTTCTCTTCTTTCAAAACTATAAATCAGTTCGTGTTCCTGTCTCTTTCTCCCGCAAAAGGAAACAGAGAGCATCTCTCTCGATCTGTTCAATTCTTCCCCTTTGATCTTGCCGCCACCGAAAATTCTCGGCATGGTGATGCGCGCGGAGAGACGCAGAGAAAGGAGGAGGTGGAGAGGAGGGGTACTGTAGAAATTTGAAAATCTAGATTCTTTTTATTTGAAGTGCTTTTCTGGTTTGAACCTATTTTAAAGGGACAGCGCTTCTAAATAAAAAAAAACCAATACAAATTTTGGAAAATTTGAATTTTCATGAAAATTCATTTGGCTAGTTAATACCTTAAAACTTGTCGAAGTTCTTCGAACATTTTYATTTATACTAAAAAAATAGAGTTTTCTTTTCGTAGTTGACAGTTTTTTTGTAAAATTGACAGCTGAAGAGATATGCCACGTGGAAGAGCACGTCCCTCAACGGTCTTGCGTTTGGAAACGAGGCGCGCGCTCTTCCAGTTACCGTATCTCCTTAAGGCTTAATTTTACAAGAAATCTATCAACTACAAAAATAAAGCTCTAATTTTGTTTTATACAATTTCAAAAAGTTTCACAAAATTAAAAAATTTCGAAATCCTTTTGTAGGCGTTCAAATATATAACAGTTTTGAATCACTTAGAGGAGTGCTCCTAACTTTGACTCAATTTATCTCGGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTGGTAAAACATTAAACATTTTATGGGCTATACTTTGTTAATTGACAAATTTTTTATACCTCTTTCAGAAGCCGAGATAAATTTAGTTGAAATTAAGGGTAAATTGAGGGGTTGGGGGCATTTGAGGTTTTACGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>505 485 10</canonical_bands>
                <polymorphic_bands>515 485</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAAAATTCATTTGGCTAGTTA</pcr_primer_p1>
		<pcr_primer_p2>TCCTCTAAGTGATTCAAAACTGT</pcr_primer_p2>
		<pcr_amplicon_size>362</pcr_amplicon_size>
		<canonical_amplicon>ATGAAAATTCATTTGGCTAGTTAATACCTTAAAACTTGTCGAAGTTCTTCGAACATTTTCATTTATACTAAAAAAATAGAGTTTTCTTTTCGTAGTTGACAGTTTTTTTGTAAAATTGACAGCTGAAGAGATATGCCACGTGGAAGAGCACGTCCCTCAACGGTCTTGCGTTTGGAAACGAGGCGCGCGCTCTTCCAGTTACCGTATCTCCTTAAGGCTTAATTTTACAAGAAATCTATCAACTACAAAAATAAAGCTCTAATTTTGTTTTATACAATTTCAAAAAGTTTCACAAAATTAAAAAATTTCGAAATCCTTTTGTAGGCGTTCAAATATATAACAGTTTTGAATCACTTAGAGGA</canonical_amplicon>
		<polymorphic_amplicon>ATGAAAATTCATTTGGCTAGTTAATACCTTAAAACTTGTCGAAGTTCTTCGAACATTTTYATTTATACTAAAAAAATAGAGTTTTCTTTTCGTAGTTGACAGTTTTTTTGTAAAATTGACAGCTGAAGAGATATGCCACGTGGAAGAGCACGTCCCTCAACGGTCTTGCGTTTGGAAACGAGGCGCGCGCTCTTCCAGTTACCGTATCTCCTTAAGGCTTAATTTTACAAGAAATCTATCAACTACAAAAATAAAGCTCTAATTTTGTTTTATACAATTTCAAAAAGTTTCACAAAATTAAAAAATTTCGAAATCCTTTTGTAGGCGTTCAAATATATAACAGTTTTGAATCACTTAGAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29832</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>94589</contig_pos>
        <strand></strand>
        <context>tttcttttcg[T/C]agttgayagt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGTTCTTCGAACATTTTCATTTATACTAAAAAAATAGAGTTTTCTTTTCG</left_flank>
        <right_flank>AGTTGACAGTTTTTTTGTAAAATTGACAGCTGAAGAGATATGCCACGTGG</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTACCGCCAAACGGTCCTTCCATGTCCAAATGCTGGTAGTAAATGTATCATCTTTTTGCCTCTTTTCTCGGCTGCCGATTTTACAGCCATACGGGACCTTCTCTTCTTTCAAAACTATAAATCAGTTCGTGTTCCTGTCTCTTTCTCCCGCAAAAGGAAACAGAGAGCATCTCTCTCGATCTGTTCAATTCTTCCCCTTTGATCTTGCCGCCACCGAAAATTCTCGGCATGGTGATGCGCGCGGAGAGACGCAGAGAAAGGAGGAGGTGGAGAGGAGGGGTACTGTAGAAATTTGAAAATCTAGATTCTTTTTATTTGAAGTGCTTTTCTGGTTTGAACCTATTTTAAAGGGACAGCGCTTCTAAATAAAAAAAAACCAATACAAATTTTGGAAAATTTGAATTTTCATGAAAATTCATTTGGCTAGTTAATACCTTAAAACTTGTCGAAGTTCTTCGAACATTTTCATTTATACTAAAAAAATAGAGTTTTCTTTTCGTAGTTGACAGTTTTTTTGTAAAATTGACAGCTGAAGAGATATGCCACGTGGAAGAGCACGTCCCTCAACGGTCTTGCGTTTGGAAACGAGGCGCGCGCTCTTCCAGTTACCGTATCTCCTTAAGGCTTAATTTTACAAGAAATCTATCAACTACAAAAATAAAGCTCTAATTTTGTTTTATACAATTTCAAAAAGTTTCACAAAATTAAAAAATTTCGAAATCCTTTTGTAGGCGTTCAAATATATAACAGTTTTGAATCACTTAGAGGAGTGCTCCTAACTTTGACTCAATTTATCTCGGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTGGTAAAACATTAAACATTTTATGGGCTATACTTTGTTAATTGACAAATTTTTTATACCTCTTTCAGAAGCCGAGATAAATTTAGTTGAAATTAAGGGTAAATTGAGGGGTTGGGGGCATTTGAGGTTTTACGATAAATCGGATTTTTTTTTGGTTTTCTGGATATATT</canonical>
            <polymorphic>TTACCGCCAAACGGTCCTTCCATGTCCAAATGCTGGTAGTAAATGTATCATCTTTTTGCCTCTTTTCTCGGCTGCCGATTTTACAGCCATACGGGACCTTCTCTTCTTTCAAAACTATAAATCAGTTCGTGTTCCTGTCTCTTTCTCCCGCAAAAGGAAACAGAGAGCATCTCTCTCGATCTGTTCAATTCTTCCCCTTTGATCTTGCCGCCACCGAAAATTCTCGGCATGGTGATGCGCGCGGAGAGACGCAGAGAAAGGAGGAGGTGGAGAGGAGGGGTACTGTAGAAATTTGAAAATCTAGATTCTTTTTATTTGAAGTGCTTTTCTGGTTTGAACCTATTTTAAAGGGACAGCGCTTCTAAATAAAAAAAAACCAATACAAATTTTGGAAAATTTGAATTTTCATGAAAATTCATTTGGCTAGTTAATACCTTAAAACTTGTCGAAGTTCTTCGAACATTTTCATTTATACTAAAAAAATAGAGTTTTCTTTTCGYAGTTGACAGTTTTTTTGTAAAATTGACAGCTGAAGAGATATGCCACGTGGAAGAGCACGTCCCTCAACGGTCTTGCGTTTGGAAACGAGGCGCGCGCTCTTCCAGTTACCGTATCTCCTTAAGGCTTAATTTTACAAGAAATCTATCAACTACAAAAATAAAGCTCTAATTTTGTTTTATACAATTTCAAAAAGTTTCACAAAATTAAAAAATTTCGAAATCCTTTTGTAGGCGTTCAAATATATAACAGTTTTGAATCACTTAGAGGAGTGCTCCTAACTTTGACTCAATTTATCTCGGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTGGTAAAACATTAAACATTTTATGGGCTATACTTTGTTAATTGACAAATTTTTTATACCTCTTTCAGAAGCCGAGATAAATTTAGTTGAAATTAAGGGTAAATTGAGGGGTTGGGGGCATTTGAGGTTTTACGATAAATCGGATTTTTTTTTGGTTTTCTGGATATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAAAATTCATTTGGCTAGTTA</pcr_primer_p1>
		<pcr_primer_p2>TCCTCTAAGTGATTCAAAACTGT</pcr_primer_p2>
		<pcr_amplicon_size>362</pcr_amplicon_size>
		<canonical_amplicon>ATGAAAATTCATTTGGCTAGTTAATACCTTAAAACTTGTCGAAGTTCTTCGAACATTTTCATTTATACTAAAAAAATAGAGTTTTCTTTTCGTAGTTGACAGTTTTTTTGTAAAATTGACAGCTGAAGAGATATGCCACGTGGAAGAGCACGTCCCTCAACGGTCTTGCGTTTGGAAACGAGGCGCGCGCTCTTCCAGTTACCGTATCTCCTTAAGGCTTAATTTTACAAGAAATCTATCAACTACAAAAATAAAGCTCTAATTTTGTTTTATACAATTTCAAAAAGTTTCACAAAATTAAAAAATTTCGAAATCCTTTTGTAGGCGTTCAAATATATAACAGTTTTGAATCACTTAGAGGA</canonical_amplicon>
		<polymorphic_amplicon>ATGAAAATTCATTTGGCTAGTTAATACCTTAAAACTTGTCGAAGTTCTTCGAACATTTTCATTTATACTAAAAAAATAGAGTTTTCTTTTCGYAGTTGACAGTTTTTTTGTAAAATTGACAGCTGAAGAGATATGCCACGTGGAAGAGCACGTCCCTCAACGGTCTTGCGTTTGGAAACGAGGCGCGCGCTCTTCCAGTTACCGTATCTCCTTAAGGCTTAATTTTACAAGAAATCTATCAACTACAAAAATAAAGCTCTAATTTTGTTTTATACAATTTCAAAAAGTTTCACAAAATTAAAAAATTTCGAAATCCTTTTGTAGGCGTTCAAATATATAACAGTTTTGAATCACTTAGAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29833</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>94596</contig_pos>
        <strand></strand>
        <context>tcgyagttga[C/T]agtttttttg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAACATTTTCATTTATACTAAAAAAATAGAGTTTTCTTTTCGTAGTTGA</left_flank>
        <right_flank>AGTTTTTTTGTAAAATTGACAGCTGAAGAGATATGCCACGTGGAAGAGCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAACGGTCCTTCCATGTCCAAATGCTGGTAGTAAATGTATCATCTTTTTGCCTCTTTTCTCGGCTGCCGATTTTACAGCCATACGGGACCTTCTCTTCTTTCAAAACTATAAATCAGTTCGTGTTCCTGTCTCTTTCTCCCGCAAAAGGAAACAGAGAGCATCTCTCTCGATCTGTTCAATTCTTCCCCTTTGATCTTGCCGCCACCGAAAATTCTCGGCATGGTGATGCGCGCGGAGAGACGCAGAGAAAGGAGGAGGTGGAGAGGAGGGGTACTGTAGAAATTTGAAAATCTAGATTCTTTTTATTTGAAGTGCTTTTCTGGTTTGAACCTATTTTAAAGGGACAGCGCTTCTAAATAAAAAAAAACCAATACAAATTTTGGAAAATTTGAATTTTCATGAAAATTCATTTGGCTAGTTAATACCTTAAAACTTGTCGAAGTTCTTCGAACATTTTCATTTATACTAAAAAAATAGAGTTTTCTTTTCGTAGTTGACAGTTTTTTTGTAAAATTGACAGCTGAAGAGATATGCCACGTGGAAGAGCACGTCCCTCAACGGTCTTGCGTTTGGAAACGAGGCGCGCGCTCTTCCAGTTACCGTATCTCCTTAAGGCTTAATTTTACAAGAAATCTATCAACTACAAAAATAAAGCTCTAATTTTGTTTTATACAATTTCAAAAAGTTTCACAAAATTAAAAAATTTCGAAATCCTTTTGTAGGCGTTCAAATATATAACAGTTTTGAATCACTTAGAGGAGTGCTCCTAACTTTGACTCAATTTATCTCGGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTGGTAAAACATTAAACATTTTATGGGCTATACTTTGTTAATTGACAAATTTTTTATACCTCTTTCAGAAGCCGAGATAAATTTAGTTGAAATTAAGGGTAAATTGAGGGGTTGGGGGCATTTGAGGTTTTACGATAAATCGGATTTTTTTTTGGTTTTCTGGATATATTCCATCCT</canonical>
            <polymorphic>CAAACGGTCCTTCCATGTCCAAATGCTGGTAGTAAATGTATCATCTTTTTGCCTCTTTTCTCGGCTGCCGATTTTACAGCCATACGGGACCTTCTCTTCTTTCAAAACTATAAATCAGTTCGTGTTCCTGTCTCTTTCTCCCGCAAAAGGAAACAGAGAGCATCTCTCTCGATCTGTTCAATTCTTCCCCTTTGATCTTGCCGCCACCGAAAATTCTCGGCATGGTGATGCGCGCGGAGAGACGCAGAGAAAGGAGGAGGTGGAGAGGAGGGGTACTGTAGAAATTTGAAAATCTAGATTCTTTTTATTTGAAGTGCTTTTCTGGTTTGAACCTATTTTAAAGGGACAGCGCTTCTAAATAAAAAAAAACCAATACAAATTTTGGAAAATTTGAATTTTCATGAAAATTCATTTGGCTAGTTAATACCTTAAAACTTGTCGAAGTTCTTCGAACATTTTCATTTATACTAAAAAAATAGAGTTTTCTTTTCGTAGTTGAYAGTTTTTTTGTAAAATTGACAGCTGAAGAGATATGCCACGTGGAAGAGCACGTCCCTCAACGGTCTTGCGTTTGGAAACGAGGCGCGCGCTCTTCCAGTTACCGTATCTCCTTAAGGCTTAATTTTACAAGAAATCTATCAACTACAAAAATAAAGCTCTAATTTTGTTTTATACAATTTCAAAAAGTTTCACAAAATTAAAAAATTTCGAAATCCTTTTGTAGGCGTTCAAATATATAACAGTTTTGAATCACTTAGAGGAGTGCTCCTAACTTTGACTCAATTTATCTCGGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTGGTAAAACATTAAACATTTTATGGGCTATACTTTGTTAATTGACAAATTTTTTATACCTCTTTCAGAAGCCGAGATAAATTTAGTTGAAATTAAGGGTAAATTGAGGGGTTGGGGGCATTTGAGGTTTTACGATAAATCGGATTTTTTTTTGGTTTTCTGGATATATTCCATCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>271 258 224 139 61 41 6</canonical_bands>
                <polymorphic_bands>285 271 258 139 41 6</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>497 324 179</canonical_bands>
                <polymorphic_bands>821 179</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>497 324 179</canonical_bands>
                <polymorphic_bands>821 179</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAAAATTCATTTGGCTAGTTA</pcr_primer_p1>
		<pcr_primer_p2>TCCTCTAAGTGATTCAAAACTGT</pcr_primer_p2>
		<pcr_amplicon_size>362</pcr_amplicon_size>
		<canonical_amplicon>ATGAAAATTCATTTGGCTAGTTAATACCTTAAAACTTGTCGAAGTTCTTCGAACATTTTCATTTATACTAAAAAAATAGAGTTTTCTTTTCGTAGTTGACAGTTTTTTTGTAAAATTGACAGCTGAAGAGATATGCCACGTGGAAGAGCACGTCCCTCAACGGTCTTGCGTTTGGAAACGAGGCGCGCGCTCTTCCAGTTACCGTATCTCCTTAAGGCTTAATTTTACAAGAAATCTATCAACTACAAAAATAAAGCTCTAATTTTGTTTTATACAATTTCAAAAAGTTTCACAAAATTAAAAAATTTCGAAATCCTTTTGTAGGCGTTCAAATATATAACAGTTTTGAATCACTTAGAGGA</canonical_amplicon>
		<polymorphic_amplicon>ATGAAAATTCATTTGGCTAGTTAATACCTTAAAACTTGTCGAAGTTCTTCGAACATTTTCATTTATACTAAAAAAATAGAGTTTTCTTTTCGTAGTTGAYAGTTTTTTTGTAAAATTGACAGCTGAAGAGATATGCCACGTGGAAGAGCACGTCCCTCAACGGTCTTGCGTTTGGAAACGAGGCGCGCGCTCTTCCAGTTACCGTATCTCCTTAAGGCTTAATTTTACAAGAAATCTATCAACTACAAAAATAAAGCTCTAATTTTGTTTTATACAATTTCAAAAAGTTTCACAAAATTAAAAAATTTCGAAATCCTTTTGTAGGCGTTCAAATATATAACAGTTTTGAATCACTTAGAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29834</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>94620</contig_pos>
        <strand></strand>
        <context>aattgacagc[T/G]gaagagatat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AAATAGAGTTTTCTTTTCGTAGTTGACAGTTTTTTTGTAAAATTGACAGC</left_flank>
        <right_flank>GAAGAGATATGCCACGTGGAAGAGCACGTCCCTCAACGGTCTTGCGTTTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTGGTAGTAAATGTATCATCTTTTTGCCTCTTTTCTCGGCTGCCGATTTTACAGCCATACGGGACCTTCTCTTCTTTCAAAACTATAAATCAGTTCGTGTTCCTGTCTCTTTCTCCCGCAAAAGGAAACAGAGAGCATCTCTCTCGATCTGTTCAATTCTTCCCCTTTGATCTTGCCGCCACCGAAAATTCTCGGCATGGTGATGCGCGCGGAGAGACGCAGAGAAAGGAGGAGGTGGAGAGGAGGGGTACTGTAGAAATTTGAAAATCTAGATTCTTTTTATTTGAAGTGCTTTTCTGGTTTGAACCTATTTTAAAGGGACAGCGCTTCTAAATAAAAAAAAACCAATACAAATTTTGGAAAATTTGAATTTTCATGAAAATTCATTTGGCTAGTTAATACCTTAAAACTTGTCGAAGTTCTTCGAACATTTTCATTTATACTAAAAAAATAGAGTTTTCTTTTCGTAGTTGACAGTTTTTTTGTAAAATTGACAGCTGAAGAGATATGCCACGTGGAAGAGCACGTCCCTCAACGGTCTTGCGTTTGGAAACGAGGCGCGCGCTCTTCCAGTTACCGTATCTCCTTAAGGCTTAATTTTACAAGAAATCTATCAACTACAAAAATAAAGCTCTAATTTTGTTTTATACAATTTCAAAAAGTTTCACAAAATTAAAAAATTTCGAAATCCTTTTGTAGGCGTTCAAATATATAACAGTTTTGAATCACTTAGAGGAGTGCTCCTAACTTTGACTCAATTTATCTCGGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTGGTAAAACATTAAACATTTTATGGGCTATACTTTGTTAATTGACAAATTTTTTATACCTCTTTCAGAAGCCGAGATAAATTTAGTTGAAATTAAGGGTAAATTGAGGGGTTGGGGGCATTTGAGGTTTTACGATAAATCGGATTTTTTTTTGGTTTTCTGGATATATTCCATCCTTTACGATAGATCAAAAATGTTAGA</canonical>
            <polymorphic>GCTGGTAGTAAATGTATCATCTTTTTGCCTCTTTTCTCGGCTGCCGATTTTACAGCCATACGGGACCTTCTCTTCTTTCAAAACTATAAATCAGTTCGTGTTCCTGTCTCTTTCTCCCGCAAAAGGAAACAGAGAGCATCTCTCTCGATCTGTTCAATTCTTCCCCTTTGATCTTGCCGCCACCGAAAATTCTCGGCATGGTGATGCGCGCGGAGAGACGCAGAGAAAGGAGGAGGTGGAGAGGAGGGGTACTGTAGAAATTTGAAAATCTAGATTCTTTTTATTTGAAGTGCTTTTCTGGTTTGAACCTATTTTAAAGGGACAGCGCTTCTAAATAAAAAAAAACCAATACAAATTTTGGAAAATTTGAATTTTCATGAAAATTCATTTGGCTAGTTAATACCTTAAAACTTGTCGAAGTTCTTCGAACATTTTCATTTATACTAAAAAAATAGAGTTTTCTTTTCGTAGTTGACAGTTTTTTTGTAAAATTGACAGCKGAAGAGATATGCCACGTGGAAGAGCACGTCCCTCAACGGTCTTGCGTTTGGAAACGAGGCGCGCGCTCTTCCAGTTACCGTATCTCCTTAAGGCTTAATTTTACAAGAAATCTATCAACTACAAAAATAAAGCTCTAATTTTGTTTTATACAATTTCAAAAAGTTTCACAAAATTAAAAAATTTCGAAATCCTTTTGTAGGCGTTCAAATATATAACAGTTTTGAATCACTTAGAGGAGTGCTCCTAACTTTGACTCAATTTATCTCGGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTGGTAAAACATTAAACATTTTATGGGCTATACTTTGTTAATTGACAAATTTTTTATACCTCTTTCAGAAGCCGAGATAAATTTAGTTGAAATTAAGGGTAAATTGAGGGGTTGGGGGCATTTGAGGTTTTACGATAAATCGGATTTTTTTTTGGTTTTCTGGATATATTCCATCCTTTACGATAGATCAAAAATGTTAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>498 368 134</canonical_bands>
                <polymorphic_bands>632 368</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>337 194 130 106 95 44 40 39 15</canonical_bands>
                <polymorphic_bands>337 201 194 130 44 40 39 15</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAAAATTCATTTGGCTAGTTA</pcr_primer_p1>
		<pcr_primer_p2>TCCTCTAAGTGATTCAAAACTGT</pcr_primer_p2>
		<pcr_amplicon_size>362</pcr_amplicon_size>
		<canonical_amplicon>ATGAAAATTCATTTGGCTAGTTAATACCTTAAAACTTGTCGAAGTTCTTCGAACATTTTCATTTATACTAAAAAAATAGAGTTTTCTTTTCGTAGTTGACAGTTTTTTTGTAAAATTGACAGCTGAAGAGATATGCCACGTGGAAGAGCACGTCCCTCAACGGTCTTGCGTTTGGAAACGAGGCGCGCGCTCTTCCAGTTACCGTATCTCCTTAAGGCTTAATTTTACAAGAAATCTATCAACTACAAAAATAAAGCTCTAATTTTGTTTTATACAATTTCAAAAAGTTTCACAAAATTAAAAAATTTCGAAATCCTTTTGTAGGCGTTCAAATATATAACAGTTTTGAATCACTTAGAGGA</canonical_amplicon>
		<polymorphic_amplicon>ATGAAAATTCATTTGGCTAGTTAATACCTTAAAACTTGTCGAAGTTCTTCGAACATTTTCATTTATACTAAAAAAATAGAGTTTTCTTTTCGTAGTTGACAGTTTTTTTGTAAAATTGACAGCKGAAGAGATATGCCACGTGGAAGAGCACGTCCCTCAACGGTCTTGCGTTTGGAAACGAGGCGCGCGCTCTTCCAGTTACCGTATCTCCTTAAGGCTTAATTTTACAAGAAATCTATCAACTACAAAAATAAAGCTCTAATTTTGTTTTATACAATTTCAAAAAGTTTCACAAAATTAAAAAATTTCGAAATCCTTTTGTAGGCGTTCAAATATATAACAGTTTTGAATCACTTAGAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29835</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>97847</contig_pos>
        <strand></strand>
        <context>TAGGATGTTC[A/G]CCGCATGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGCACTTATTCCCGACTTTTTCTCGTTATTCGTCCATTCTAGGATGTTC</left_flank>
        <right_flank>CCGCATGAAAACAGAAAAAAAAAACGAAAACGCACATACAGGATTCGAAC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCATTTTTGCATACAGTAACCGCTGTTTCATTTTTGCGGCTAATTATCTCGGTTCCCAATATAGCCATCAAAAATTTGTTAACTAATGAAATGTGTAGAATTTTAAGGACTACATTTTATTTGTTAAACATTTTTTATATCTTGTACTGTTCCTGAGATATAACACCTTGAAAGAAGCACACCTTAAGGACCTCATGCCTCGCTTGTCCCGACTTCAAACGTATATACCTCATGGACCGTTTAAGTTATCAAAAAGTTGCTCACTTATAAAATATGTGAAATTTTATAAACTACATTTTATTAGTTAAAGGAGGCCAGACACGAAAGTCTACGGGGTTTTCTCGGGGCGAGATCATGTATTCTGACGGAAAATCGTGCGATTGCGACCAATGCGCGCTACTTGACGAGCATTTATTTTTTTTTAGCATACACTAGATTTTTTTACTGTTTGGCACTTATTCCCGACTTTTTCTCGTTATTCGTCCATTCTAGGATGTTCACCGCATGAAAACAGAAAAAAAAAACGAAAACGCACATACAGGATTCGAACCCGCGATGCACGACTGATAGACAAGCACGCTCACCTTCACACTACACAGCGCTTGTCGGCTTCTACCTCTAAAACGATTATGAAACGAGGAGTGGGCGCCGCTTGGAAGAACGGTCGCGTTATCGCTTGTACAGTAACAAGGAGTTATGGTTTTGTGTCCATTGTTATTTTCTGACTGTACTGTGGCATATATAAAAAAAATAGAATTTTGAAAATTTTCATGTTTGGCTTCCTTTAACAACTTTTTGGTATCTTTTATAGTTATTGAGATAATTAGCGTCAAAACAGTACTGTCTAAGTTAGCGCCCGCGTAGCTCAGCCAAGGGATTTCTGTTAACAGATTTCTGACTTTAAAGCTTTAGATTACTGTAGATTTTAACAATTACAAAAATTTTCAGTAAAATCTGATTTTTTGGGTTTCGGCGAAACTAAGAATCTATGTCAAAAATC</canonical>
            <polymorphic>GCATTTTTGCATACAGTAACCGCTGTTTCATTTTTGCGGCTAATTATCTCGGTTCCCAATATAGCCATCAAAAATTTGTTAACTAATGAAATGTGTAGAATTTTAAGGACTACATTTTATTTGTTAAACATTTTTTATATCTTGTACTGTTCCTGAGATATAACACCTTGAAAGAAGCACACCTTAAGGACCTCATGCCTCGCTTGTCCCGACTTCAAACGTATATACCTCATGGACCGTTTAAGTTATCAAAAAGTTGCTCACTTATAAAATATGTGAAATTTTATAAACTACATTTTATTAGTTAAAGGAGGCCAGACACGAAAGTCTACGGGGTTTTCTCGGGGCGAGATCATGTATTCTGACGGAAAATCGTGCGATTGCGACCAATGCGCGCTACTTGACGAGCATTTATTTTTTTTTAGCATACACTAGATTTTTTTACTGTTTGGCACTTATTCCCGACTTTTTCTCGTTATTCGTCCATTCTAGGATGTTCRCCGCATGAAAACAGAAAAAAAAAACGAAAACGCACATACAGGATTCGAACCCGCGATGCACGACTGATAGACAAGCACGCTCACCTTCACACTACACAGCGCTTGTCGGCTTCTACCTCTAAAACGATTATGAAACGAGGAGTGGGCGCCGCTTGGAAGAACGGTCGCGTTATCGCTTGTACAGTAACAAGGAGTTATGGTTTTGTGTCCATTGTTATTTTCTGACTGTACTGTGGCATATATAAAAAAAATAGAATTTTGAAAATTTTCATGTTTGGCTTCCTTTAACAACTTTTTGGTATCTTTTATAGTTATTGAGATAATTAGCGTCAAAACAGTACTGTCTAAGTTAGCGCCCGCGTAGCTCAGCCAAGGGATTTCTGTTAACAGATTTCTGACTTTAAAGCTTTAGATTACTGTAGATTTTAACAATTACAAAAATTTTCAGTAAAATCTGATTTTTTGGGTTTCGGCGAAACTAAGAATCTATGTCAAAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>265 95 82 70 63 56 54 48 46 43 34 28 26 23 17 15 14 6 6 5 2 2</canonical_bands>
                <polymorphic_bands>265 95 82 80 70 63 56 54 48 43 28 26 23 17 15 14 6 6 5 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>387 249 169 115 80</canonical_bands>
                <polymorphic_bands>556 249 115 80</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTACTTGACGAGCATTTATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTCGTTTCATAATCGTTTTAGAG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTACTTGACGAGCATTTATTTTTTTTTAGCATACACTAGATTTTTTTACTGTTTGGCACTTATTCCCGACTTTTTCTCGTTATTCGTCCATTCTAGGATGTTCACCGCATGAAAACAGAAAAAAAAAACGAAAACGCACATACAGGATTCGAACCCGCGATGCACGACTGATAGACAAGCACGCTCACCTTCACACTACACAGCGCTTGTCGGCTTCTACCTCTAAAACGATTATGAAACGAG</canonical_amplicon>
		<polymorphic_amplicon>CTACTTGACGAGCATTTATTTTTTTTTAGCATACACTAGATTTTTTTACTGTTTGGCACTTATTCCCGACTTTTTCTCGTTATTCGTCCATTCTAGGATGTTCRCCGCATGAAAACAGAAAAAAAAAACGAAAACGCACATACAGGATTCGAACCCGCGATGCACGACTGATAGACAAGCACGCTCACCTTCACACTACACAGCGCTTGTCGGCTTCTACCTCTAAAACGATTATGAAACGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29836</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>97886</contig_pos>
        <strand></strand>
        <context>AACGCACATA[C/G]AGGAKTCGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTAGGATGTTCACCGCATGAAAACAGAAAAAAAAAACGAAAACGCACATA</left_flank>
        <right_flank>AGGATTCGAACCCGCGATGCACGACTGATAGACAAGCACGCTCACCTTCA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAATTATCTCGGTTCCCAATATAGCCATCAAAAATTTGTTAACTAATGAAATGTGTAGAATTTTAAGGACTACATTTTATTTGTTAAACATTTTTTATATCTTGTACTGTTCCTGAGATATAACACCTTGAAAGAAGCACACCTTAAGGACCTCATGCCTCGCTTGTCCCGACTTCAAACGTATATACCTCATGGACCGTTTAAGTTATCAAAAAGTTGCTCACTTATAAAATATGTGAAATTTTATAAACTACATTTTATTAGTTAAAGGAGGCCAGACACGAAAGTCTACGGGGTTTTCTCGGGGCGAGATCATGTATTCTGACGGAAAATCGTGCGATTGCGACCAATGCGCGCTACTTGACGAGCATTTATTTTTTTTTAGCATACACTAGATTTTTTTACTGTTTGGCACTTATTCCCGACTTTTTCTCGTTATTCGTCCATTCTAGGATGTTCACCGCATGAAAACAGAAAAAAAAAACGAAAACGCACATACAGGATTCGAACCCGCGATGCACGACTGATAGACAAGCACGCTCACCTTCACACTACACAGCGCTTGTCGGCTTCTACCTCTAAAACGATTATGAAACGAGGAGTGGGCGCCGCTTGGAAGAACGGTCGCGTTATCGCTTGTACAGTAACAAGGAGTTATGGTTTTGTGTCCATTGTTATTTTCTGACTGTACTGTGGCATATATAAAAAAAATAGAATTTTGAAAATTTTCATGTTTGGCTTCCTTTAACAACTTTTTGGTATCTTTTATAGTTATTGAGATAATTAGCGTCAAAACAGTACTGTCTAAGTTAGCGCCCGCGTAGCTCAGCCAAGGGATTTCTGTTAACAGATTTCTGACTTTAAAGCTTTAGATTACTGTAGATTTTAACAATTACAAAAATTTTCAGTAAAATCTGATTTTTTGGGTTTCGGCGAAACTAAGAATCTATGTCAAAAATCTAAAAATCCAAAGATTTCAAAATTCGAAAAAAAAATCTG</canonical>
            <polymorphic>CTAATTATCTCGGTTCCCAATATAGCCATCAAAAATTTGTTAACTAATGAAATGTGTAGAATTTTAAGGACTACATTTTATTTGTTAAACATTTTTTATATCTTGTACTGTTCCTGAGATATAACACCTTGAAAGAAGCACACCTTAAGGACCTCATGCCTCGCTTGTCCCGACTTCAAACGTATATACCTCATGGACCGTTTAAGTTATCAAAAAGTTGCTCACTTATAAAATATGTGAAATTTTATAAACTACATTTTATTAGTTAAAGGAGGCCAGACACGAAAGTCTACGGGGTTTTCTCGGGGCGAGATCATGTATTCTGACGGAAAATCGTGCGATTGCGACCAATGCGCGCTACTTGACGAGCATTTATTTTTTTTTAGCATACACTAGATTTTTTTACTGTTTGGCACTTATTCCCGACTTTTTCTCGTTATTCGTCCATTCTAGGATGTTCACCGCATGAAAACAGAAAAAAAAAACGAAAACGCACATASAGGATTCGAACCCGCGATGCACGACTGATAGACAAGCACGCTCACCTTCACACTACACAGCGCTTGTCGGCTTCTACCTCTAAAACGATTATGAAACGAGGAGTGGGCGCCGCTTGGAAGAACGGTCGCGTTATCGCTTGTACAGTAACAAGGAGTTATGGTTTTGTGTCCATTGTTATTTTCTGACTGTACTGTGGCATATATAAAAAAAATAGAATTTTGAAAATTTTCATGTTTGGCTTCCTTTAACAACTTTTTGGTATCTTTTATAGTTATTGAGATAATTAGCGTCAAAACAGTACTGTCTAAGTTAGCGCCCGCGTAGCTCAGCCAAGGGATTTCTGTTAACAGATTTCTGACTTTAAAGCTTTAGATTACTGTAGATTTTAACAATTACAAAAATTTTCAGTAAAATCTGATTTTTTGGGTTTCGGCGAAACTAAGAATCTATGTCAAAAATCTAAAAATCCAAAGATTTCAAAATTCGAAAAAAAAATCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTACTTGACGAGCATTTATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTCGTTTCATAATCGTTTTAGAG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTACTTGACGAGCATTTATTTTTTTTTAGCATACACTAGATTTTTTTACTGTTTGGCACTTATTCCCGACTTTTTCTCGTTATTCGTCCATTCTAGGATGTTCACCGCATGAAAACAGAAAAAAAAAACGAAAACGCACATACAGGATTCGAACCCGCGATGCACGACTGATAGACAAGCACGCTCACCTTCACACTACACAGCGCTTGTCGGCTTCTACCTCTAAAACGATTATGAAACGAG</canonical_amplicon>
		<polymorphic_amplicon>CTACTTGACGAGCATTTATTTTTTTTTAGCATACACTAGATTTTTTTACTGTTTGGCACTTATTCCCGACTTTTTCTCGTTATTCGTCCATTCTAGGATGTTCACCGCATGAAAACAGAAAAAAAAAACGAAAACGCACATASAGGATTCGAACCCGCGATGCACGACTGATAGACAAGCACGCTCACCTTCACACTACACAGCGCTTGTCGGCTTCTACCTCTAAAACGATTATGAAACGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29837</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>97891</contig_pos>
        <strand></strand>
        <context>ACATASAGGA[T/G]TCGAACCCGC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATGTTCACCGCATGAAAACAGAAAAAAAAAACGAAAACGCACATACAGGA</left_flank>
        <right_flank>TCGAACCCGCGATGCACGACTGATAGACAAGCACGCTCACCTTCACACTA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCTCGGTTCCCAATATAGCCATCAAAAATTTGTTAACTAATGAAATGTGTAGAATTTTAAGGACTACATTTTATTTGTTAAACATTTTTTATATCTTGTACTGTTCCTGAGATATAACACCTTGAAAGAAGCACACCTTAAGGACCTCATGCCTCGCTTGTCCCGACTTCAAACGTATATACCTCATGGACCGTTTAAGTTATCAAAAAGTTGCTCACTTATAAAATATGTGAAATTTTATAAACTACATTTTATTAGTTAAAGGAGGCCAGACACGAAAGTCTACGGGGTTTTCTCGGGGCGAGATCATGTATTCTGACGGAAAATCGTGCGATTGCGACCAATGCGCGCTACTTGACGAGCATTTATTTTTTTTTAGCATACACTAGATTTTTTTACTGTTTGGCACTTATTCCCGACTTTTTCTCGTTATTCGTCCATTCTAGGATGTTCACCGCATGAAAACAGAAAAAAAAAACGAAAACGCACATACAGGATTCGAACCCGCGATGCACGACTGATAGACAAGCACGCTCACCTTCACACTACACAGCGCTTGTCGGCTTCTACCTCTAAAACGATTATGAAACGAGGAGTGGGCGCCGCTTGGAAGAACGGTCGCGTTATCGCTTGTACAGTAACAAGGAGTTATGGTTTTGTGTCCATTGTTATTTTCTGACTGTACTGTGGCATATATAAAAAAAATAGAATTTTGAAAATTTTCATGTTTGGCTTCCTTTAACAACTTTTTGGTATCTTTTATAGTTATTGAGATAATTAGCGTCAAAACAGTACTGTCTAAGTTAGCGCCCGCGTAGCTCAGCCAAGGGATTTCTGTTAACAGATTTCTGACTTTAAAGCTTTAGATTACTGTAGATTTTAACAATTACAAAAATTTTCAGTAAAATCTGATTTTTTGGGTTTCGGCGAAACTAAGAATCTATGTCAAAAATCTAAAAATCCAAAGATTTCAAAATTCGAAAAAAAAATCTGAAAAT</canonical>
            <polymorphic>TATCTCGGTTCCCAATATAGCCATCAAAAATTTGTTAACTAATGAAATGTGTAGAATTTTAAGGACTACATTTTATTTGTTAAACATTTTTTATATCTTGTACTGTTCCTGAGATATAACACCTTGAAAGAAGCACACCTTAAGGACCTCATGCCTCGCTTGTCCCGACTTCAAACGTATATACCTCATGGACCGTTTAAGTTATCAAAAAGTTGCTCACTTATAAAATATGTGAAATTTTATAAACTACATTTTATTAGTTAAAGGAGGCCAGACACGAAAGTCTACGGGGTTTTCTCGGGGCGAGATCATGTATTCTGACGGAAAATCGTGCGATTGCGACCAATGCGCGCTACTTGACGAGCATTTATTTTTTTTTAGCATACACTAGATTTTTTTACTGTTTGGCACTTATTCCCGACTTTTTCTCGTTATTCGTCCATTCTAGGATGTTCACCGCATGAAAACAGAAAAAAAAAACGAAAACGCACATACAGGAKTCGAACCCGCGATGCACGACTGATAGACAAGCACGCTCACCTTCACACTACACAGCGCTTGTCGGCTTCTACCTCTAAAACGATTATGAAACGAGGAGTGGGCGCCGCTTGGAAGAACGGTCGCGTTATCGCTTGTACAGTAACAAGGAGTTATGGTTTTGTGTCCATTGTTATTTTCTGACTGTACTGTGGCATATATAAAAAAAATAGAATTTTGAAAATTTTCATGTTTGGCTTCCTTTAACAACTTTTTGGTATCTTTTATAGTTATTGAGATAATTAGCGTCAAAACAGTACTGTCTAAGTTAGCGCCCGCGTAGCTCAGCCAAGGGATTTCTGTTAACAGATTTCTGACTTTAAAGCTTTAGATTACTGTAGATTTTAACAATTACAAAAATTTTCAGTAAAATCTGATTTTTTGGGTTTCGGCGAAACTAAGAATCTATGTCAAAAATCTAAAAATCCAAAGATTTCAAAATTCGAAAAAAAAATCTGAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 479 20</canonical_bands>
                <polymorphic_bands>980 20</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>498 441 61</canonical_bands>
                <polymorphic_bands>939 61</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTACTTGACGAGCATTTATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTCGTTTCATAATCGTTTTAGAG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTACTTGACGAGCATTTATTTTTTTTTAGCATACACTAGATTTTTTTACTGTTTGGCACTTATTCCCGACTTTTTCTCGTTATTCGTCCATTCTAGGATGTTCACCGCATGAAAACAGAAAAAAAAAACGAAAACGCACATACAGGATTCGAACCCGCGATGCACGACTGATAGACAAGCACGCTCACCTTCACACTACACAGCGCTTGTCGGCTTCTACCTCTAAAACGATTATGAAACGAG</canonical_amplicon>
		<polymorphic_amplicon>CTACTTGACGAGCATTTATTTTTTTTTAGCATACACTAGATTTTTTTACTGTTTGGCACTTATTCCCGACTTTTTCTCGTTATTCGTCCATTCTAGGATGTTCACCGCATGAAAACAGAAAAAAAAAACGAAAACGCACATACAGGAKTCGAACCCGCGATGCACGACTGATAGACAAGCACGCTCACCTTCACACTACACAGCGCTTGTCGGCTTCTACCTCTAAAACGATTATGAAACGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29838</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>99349</contig_pos>
        <strand></strand>
        <context>tctcgataac[C/T]ataaaagata</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCGGTGGCTAATTATAAATAACCTATTCAACTTTAATTATCTCGATAAC</left_flank>
        <right_flank>ATAAAAGATATCAACAATTTGTCAACTATAAAAATGTAGCTCCTAAAATT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGAGATCCTTGGATTCTTAGATTTTGAAAGAGAAATTTTCTTTCAGGCATTTTCTAAGGTTTCCAGTTAAAAATATGTTAAATCGACACAATTTTAGCGCTAGAACGTTTCGAAATATCGGTTTTTGAGATGTTGAGATTCTTCTGAAATTCAGAATATCACAGAATTCTGGAAAATTTAGAAAGTTCAGAATTTCTTTTCTGGTTTTCGCCTTTTCAATATTCTAAGCTTTAAATCGGTAAAATCTAAAAATTCTAAGAAAAAAAAGATTACTGTAGTTAGTTGGTGACAACCAGTCTTTAAACTCCGACACAAAACAACAAATTCGTTGTGTTTTTCTATTGAAATTGATGAAATCTAAAGTAACCGATTAATTGACAATTTTGGAACTCCTTTTGCAGTTGTGGACCAAATAGTAGAGCTGCATGCTCAGCTACGCGGTCGACGCCGGTGGCTAATTATAAATAACCTATTCAACTTTAATTATCTCGATAACCATAAAAGATATCAACAATTTGTCAACTATAAAAATGTAGCTCCTAAAATTTCGCACATTTTATTAATTAGCAGCTTTTAGATAACTCAAATAGCCCATGAGATATAAACGCTTGAATTTGGAGCGTCTTAAAGGTGCGCTCCTTTAAACGCGTTATATCTTAAGAACCAAAAAAGCTATCAAAACGTTGTTAACTAACAAAATGTAGCCCATCAAATTTTACATATTTTGTCAGTTCATAAGATATTAGCGTATGAAGCTAAGGCAAGTGTGGTGTGGCGTCTTTAAGGTGCGCTTACTTCAAAACGTTATATCTCAAAAACCTCAAATATATCAAAAAGTAATTAATTAACAAAATGTAGCTCCAAAAATTTGCAAATTTTGTTAGCTGACAACTGTTTGATAACTAATATGATCCATTAATATGATCCATTAGTTATAAGCGCTTGAAGTGAGGCAACCGAGGCTTGACGTTCTTAAGGTGCGCTTACTTCAAAACGT</canonical>
            <polymorphic>TTTTGAGATCCTTGGATTCTTAGATTTTGAAAGAGAAATTTTCTTTCAGGCATTTTCTAAGGTTTCCAGTTAAAAATATGTTAAATCGACACAATTTTAGCGCTAGAACGTTTCGAAATATCGGTTTTTGAGATGTTGAGATTCTTCTGAAATTCAGAATATCACAGAATTCTGGAAAATTTAGAAAGTTCAGAATTTCTTTTCTGGTTTTCGCCTTTTCAATATTCTAAGCTTTAAATCGGTAAAATCTAAAAATTCTAAGAAAAAAAAGATTACTGTAGTTAGTTGGTGACAACCAGTCTTTAAACTCCGACACAAAACAACAAATTCGTTGTGTTTTTCTATTGAAATTGATGAAATCTAAAGTAACCGATTAATTGACAATTTTGGAACTCCTTTTGCAGTTGTGGACCAAATAGTAGAGCTGCATGCTCAGCTACGCGGTCGACGCCGGTGGCTAATTATAAATAACCTATTCAACTTTAATTATCTCGATAACYATAAAAGATATCAACAATTTGTCAACTATAAAAATGTAGCTCCTAAAATTTCGCACATTTTATTAATTAGCAGCTTTTAGATAACTCAAATAGCCCATGAGATATAAACGCTTGAATTTGGAGCGTCTTAAAGGTGCGCTCCTTTAAACGCGTTATATCTTAAGAACCAAAAAAGCTATCAAAACGTTGTTAACTAACAAAATGTAGCCCATCAAATTTTACATATTTTGTCAGTTCATAAGATATTAGCGTATGAAGCTAAGGCAAGTGTGGTGTGGCGTCTTTAAGGTGCGCTTACTTCAAAACGTTATATCTCAAAAACCTCAAATATATCAAAAAGTAATTAATTAACAAAATGTAGCTCCAAAAATTTGCAAATTTTGTTAGCTGACAACTGTTTGATAACTAATATGATCCATTAATATGATCCATTAGTTATAAGCGCTTGAAGTGAGGCAACCGAGGCTTGACGTTCTTAAGGTGCGCTTACTTCAAAACGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGTGGACCAAATAGTAGAGC</pcr_primer_p1>
		<pcr_primer_p2>TAATCGATGTTCATCACACCT</pcr_primer_p2>
		<pcr_amplicon_size>946</pcr_amplicon_size>
		<canonical_amplicon>GTTGTGGACCAAATAGTAGAGCTGCATGCTCAGCTACGCGGTCGACGCCGGTGGCTAATTATAAATAACCTATTCAACTTTAATTATCTCGATAACCATAAAAGATATCAACAATTT</canonical_amplicon>
		<polymorphic_amplicon>GTTGTGGACCAAATAGTAGAGCTGCATGCTCAGCTACGCGGTCGACGCCGGTGGCTAATTATAAATAACCTATTCAACTTTAATTATCTCGATAACYATAAAAGATATCAACAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29839</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>99678</contig_pos>
        <strand></strand>
        <context>aaacctcaaa[T/A]atatcaaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CGTCTTTAAGGTGCGCTTACTTCAAAACGTTATATCTCAAAAACCTCAAA</left_flank>
        <right_flank>ATATCAAAAAGTAATTAATTAACAAAATGTAGCTCCAAAAATTTGCAAAT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTTGTGTTTTTCTATTGAAATTGATGAAATCTAAAGTAACCGATTAATTGACAATTTTGGAACTCCTTTTGCAGTTGTGGACCAAATAGTAGAGCTGCATGCTCAGCTACGCGGTCGACGCCGGTGGCTAATTATAAATAACCTATTCAACTTTAATTATCTCGATAACCATAAAAGATATCAACAATTTGTCAACTATAAAAATGTAGCTCCTAAAATTTCGCACATTTTATTAATTAGCAGCTTTTAGATAACTCAAATAGCCCATGAGATATAAACGCTTGAATTTGGAGCGTCTTAAAGGTGCGCTCCTTTAAACGCGTTATATCTTAAGAACCAAAAAAGCTATCAAAACGTTGTTAACTAACAAAATGTAGCCCATCAAATTTTACATATTTTGTCAGTTCATAAGATATTAGCGTATGAAGCTAAGGCAAGTGTGGTGTGGCGTCTTTAAGGTGCGCTTACTTCAAAACGTTATATCTCAAAAACCTCAAATATATCAAAAAGTAATTAATTAACAAAATGTAGCTCCAAAAATTTGCAAATTTTGTTAGCTGACAACTGTTTGATAACTAATATGATCCATTAATATGATCCATTAGTTATAAGCGCTTGAAGTGAGGCAACCGAGGCTTGACGTTCTTAAGGTGCGCTTACTTCAAAACGTTGTATCTCAAAAACAAAGACAGTTGTCAAAAAGTAATCAACTAACAAAATCTAGTTCATAAAATTTCACACATTTTGCATGTTAACAACTTTGTGCTAAATTTGATAAACCATAAGATATGAGCGTTTGAAGTGAGGGGCATGTGAGGTGTGACACCATCAAGGTGCGCCTACTTCAACAAGTTATATCTCAAGAAAAATTAATTATATTAAAAAGTAATCAACTACAAGAATGTAGCTCATAAAATTTTACATATTTGAATAGTGAACAACTTTTTGATAGCTTTAATGGACCATGAGATATAGTCATTTGAAATTAAGGCGAACCGA</canonical>
            <polymorphic>CGTTGTGTTTTTCTATTGAAATTGATGAAATCTAAAGTAACCGATTAATTGACAATTTTGGAACTCCTTTTGCAGTTGTGGACCAAATAGTAGAGCTGCATGCTCAGCTACGCGGTCGACGCCGGTGGCTAATTATAAATAACCTATTCAACTTTAATTATCTCGATAACCATAAAAGATATCAACAATTTGTCAACTATAAAAATGTAGCTCCTAAAATTTCGCACATTTTATTAATTAGCAGCTTTTAGATAACTCAAATAGCCCATGAGATATAAACGCTTGAATTTGGAGCGTCTTAAAGGTGCGCTCCTTTAAACGCGTTATATCTTAAGAACCAAAAAAGCTATCAAAACGTTGTTAACTAACAAAATGTAGCCCATCAAATTTTACATATTTTGTCAGTTCATAAGATATTAGCGTATGAAGCTAAGGCAAGTGTGGTGTGGCGTCTTTAAGGTGCGCTTACTTCAAAACGTTATATCTCAAAAACCTCAAAWATATCAAAAAGTAATTAATTAACAAAATGTAGCTCCAAAAATTTGCAAATTTTGTTAGCTGACAACTGTTTGATAACTAATATGATCCATTAATATGATCCATTAGTTATAAGCGCTTGAAGTGAGGCAACCGAGGCTTGACGTTCTTAAGGTGCGCTTACTTCAAAACGTTGTATCTCAAAAACAAAGACAGTTGTCAAAAAGTAATCAACTAACAAAATCTAGTTCATAAAATTTCACACATTTTGCATGTTAACAACTTTGTGCTAAATTTGATAAACCATAAGATATGAGCGTTTGAAGTGAGGGGCATGTGAGGTGTGACACCATCAAGGTGCGCCTACTTCAACAAGTTATATCTCAAGAAAAATTAATTATATTAAAAAGTAATCAACTACAAGAATGTAGCTCATAAAATTTTACATATTTGAATAGTGAACAACTTTTTGATAGCTTTAATGGACCATGAGATATAGTCATTTGAAATTAAGGCGAACCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGTGGACCAAATAGTAGAGC</pcr_primer_p1>
		<pcr_primer_p2>TAATCGATGTTCATCACACCT</pcr_primer_p2>
		<pcr_amplicon_size>946</pcr_amplicon_size>
		<canonical_amplicon>GTTGTGGACCAAATAGTAGAGCTGCATGCTCAGCTACGCGGTCGACGCCGGTGGCTAATTATAAATAACCTATTCAACTTTAATTATCTCGATAACCATAAAAGATATCAACAATTTGTCAACTATAAAAATGTAGCTCCTAAAATTTCGCACATTTTATTAATTAGCAGCTTTTAGATAACTCAAATAGCCCATGAGATATAAACGCTTGAATTTGGAGCGTCTTAAAGGTGCGCTCCTTTAAACGCGTTATATCTTAAGAACCAAAAAAGCTATCAAAACGTTGTTAACTAACAAAATGTAGCCCATCAAATTTTACATATTTTGTCAGTTCATAAGATATTAGCGTATGAAGCTAAGGCAAGTGTGGTGTGGCGTCTTTAAGGTGCGCTTACTTCAAAACGTTATATCTCAAAAACCTCAAATATATCAAAAAGTAATTAATT</canonical_amplicon>
		<polymorphic_amplicon>GTTGTGGACCAAATAGTAGAGCTGCATGCTCAGCTACGCGGTCGACGCCGGTGGCTAATTATAAATAACCTATTCAACTTTAATTATCTCGATAACCATAAAAGATATCAACAATTTGTCAACTATAAAAATGTAGCTCCTAAAATTTCGCACATTTTATTAATTAGCAGCTTTTAGATAACTCAAATAGCCCATGAGATATAAACGCTTGAATTTGGAGCGTCTTAAAGGTGCGCTCCTTTAAACGCGTTATATCTTAAGAACCAAAAAAGCTATCAAAACGTTGTTAACTAACAAAATGTAGCCCATCAAATTTTACATATTTTGTCAGTTCATAAGATATTAGCGTATGAAGCTAAGGCAAGTGTGGTGTGGCGTCTTTAAGGTGCGCTTACTTCAAAACGTTATATCTCAAAAACCTCAAAWATATCAAAAAGTAATTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29840</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>118627</contig_pos>
        <strand>-</strand>
        <context>ATTTCTTATG[A/G]GTTTCTCTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAGTTAAATTTTCATTTATTTTCTCAATTAATTATCCCTATTTCTTATG</left_flank>
        <right_flank>GTTTCTCTTCATTTTTTGTCCTTATCACATTATTATCGGCATTCATTCGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATAAGAATATATAAGAGAAATCCGAAAAATTCCAAGCTCCTCATATTTTATTCATTCATAATTTTCCATTTTAATTACTTGTCATGTTTTTCCATATGTATCTCCTATCTGTTTTCTTTTGTAACTTTTTTTTTCTTTCAACATATTTGTAAATCATTCATAATTGTACATTTTTTTTCTTTTTTTCTTTCCATGAGATTCCAGTTCAATGTTCCCTTCTTCTCTCAACCAATCCACTTCACTTCTTATATATTCATATTCATTTTTTCAAATTTTAAATTTTTATTACTGTTACATTCCTACTACAGATTCCCTTTTATTTCGACCATTTTTTCCATTATTCTTTTATTTCGCCACGGCCTCGCTGAAGGGAACCTAGATTTAAAAATTGGAAAGCGCGCCAAGTTTGGACGCGTTGCGCGGTCGCGTCGCGGCTTTTCATTTTTTCCAGTTAAATTTTCATTTATTTTCTCAATTAATTATCCCTATTTCTTATGTGTTTCTCTTCATTTTTTGTCCTTATCACATTATTATCGGCATTCATTCGTTTTTTATCAAATTTATTCCAGAAATCATCATTTTCCGTCGCCAAAACTTCGTTCACCTCGTTTCCTGAAATATCTGTAAATTTCACATGATTTTTTTTCAATAAATTTGCCGATTTTCAATTAATATCGATAATTTTGATTTGAATACTCGAAGAATTCCAGTTTTCATTCAGTCTTTCAGCACTTCACTTCAGATTTGATAAACCCCGCCCATTTGCAACCTGTGCGCAGAGTTTCCGCAAAGTGGCGCACGGTTCCCCTTTCTTTCCGATTCGTTTCTTTCCGTTTCGTTTCTTTCGCTTTCGTTTCTTACGGTTTCGTTTCTTTCGAATTTCAATTCTTTCCGATCGGTACGGTCTCCATTTTTACGACTCGCGTTTTGCGCGTAGACTTAAATGCCTACTCCGCAGTACTACGGTAAACAACGGTGTTTGCACCTCGCTCAGCCAC</canonical>
            <polymorphic>GAATAAGAATATATAAGAGAAATCCGAAAAATTCCAAGCTCCTCATATTTTATTCATTCATAATTTTCCATTTTAATTACTTGTCATGTTTTTCCATATGTATCTCCTATCTGTTTTCTTTTGTAACTTTTTTTTTCTTTCAACATATTTGTAAATCATTCATAATTGTACATTTTTTTTCTTTTTTTCTTTCCATGAGATTCCAGTTCAATGTTCCCTTCTTCTCTCAACCAATCCACTTCACTTCTTATATATTCATATTCATTTTTTCAAATTTTAAATTTTTATTACTGTTACATTCCTACTACAGATTCCCTTTTATTTCGACCATTTTTTCCATTATTCTTTTATTTCGCCACGGCCTCGCTGAAGGGAACCTAGATTTAAAAATTGGAAAGCGCGCCAAGTTTGGACGCGTTGCGCGGTCGCGTCGCGGCTTTTCATTTTTTCCAGTTAAATTTTCATTTATTTTCTCAATTAATTATCCCTATTTCTTATGRGTTTCTCTTCATTTTTTGTCCTTATCACATTATTATCGGCATTCATTCGTTTTTTATCAAATTTATTCCAGAAATCATCATTTTCCGTCGCCAAAACTTCGTTCACCTCGTTTCCTGAAATATCTGTAAATTTCACATGATTTTTTTTCAATAAATTTGCCGATTTTCAATTAATATCGATAATTTTGATTTGAATACTCGAAGAATTCCAGTTTTCATTCAGTCTTTCAGCACTTCACTTCAGATTTGATAAACCCCGCCCATTTGCAACCTGTGCGCAGAGTTTCCGCAAAGTGGCGCACGGTTCCCCTTTCTTTCCGATTCGTTTCTTTCCGTTTCGTTTCTTTCGCTTTCGTTTCTTACGGTTTCGTTTCTTTCGAATTTCAATTCTTTCCGATCGGTACGGTCTCCATTTTTACGACTCGCGTTTTGCGCGTAGACTTAAATGCCTACTCCGCAGTACTACGGTAAACAACGGTGTTTGCACCTCGCTCAGCCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>238 179 143 115 98 78 38 30 26 20 13 6 5 5 5 1</canonical_bands>
                <polymorphic_bands>238 179 169 115 98 78 38 30 20 13 6 5 5 5 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCTTTTATTTCGACCATTT</pcr_primer_p1>
		<pcr_primer_p2>AAAATGATGATTTCTGGAATAAA</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>CCCTTTTATTTCGACCATTTTTTCCATTATTCTTTTATTTCGCCACGGCCTCGCTGAAGGGAACCTAGATTTAAAAATTGGAAAGCGCGCCAAGTTTGGACGCGTTGCGCGGTCGCGTCGCGGCTTTTCATTTTTTCCAGTTAAATTTTCATTTATTTTCTCAATTAATTATCCCTATTTCTTATGTGTTTCTCTTCATTTTTTGTCCTTATCACATTATTATCGGCATTCATTCGTTTTTTATCAAATTTATTCCAGAAATCATCATTTT</canonical_amplicon>
		<polymorphic_amplicon>CCCTTTTATTTCGACCATTTTTTCCATTATTCTTTTATTTCGCCACGGCCTCGCTGAAGGGAACCTAGATTTAAAAATTGGAAAGCGCGCCAAGTTTGGACGCGTTGCGCGGTCGCGTCGCGGCTTTTCATTTTTTCCAGTTAAATTTTCATTTATTTTCTCAATTAATTATCCCTATTTCTTATGRGTTTCTCTTCATTTTTTGTCCTTATCACATTATTATCGGCATTCATTCGTTTTTTATCAAATTTATTCCAGAAATCATCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29841</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>118808</contig_pos>
        <strand></strand>
        <context>TTAATATCGA[T/A]AATTTTGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTCACATGATTTTTTTTCAATAAATTTGCCGATTTTCAATTAATATCGA</left_flank>
        <right_flank>AATTTTGATTTGAATACTCGAAGAATTCCAGTTTTCATTCAGTCTTTCAG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTTCTTTCCATGAGATTCCAGTTCAATGTTCCCTTCTTCTCTCAACCAATCCACTTCACTTCTTATATATTCATATTCATTTTTTCAAATTTTAAATTTTTATTACTGTTACATTCCTACTACAGATTCCCTTTTATTTCGACCATTTTTTCCATTATTCTTTTATTTCGCCACGGCCTCGCTGAAGGGAACCTAGATTTAAAAATTGGAAAGCGCGCCAAGTTTGGACGCGTTGCGCGGTCGCGTCGCGGCTTTTCATTTTTTCCAGTTAAATTTTCATTTATTTTCTCAATTAATTATCCCTATTTCTTATGTGTTTCTCTTCATTTTTTGTCCTTATCACATTATTATCGGCATTCATTCGTTTTTTATCAAATTTATTCCAGAAATCATCATTTTCCGTCGCCAAAACTTCGTTCACCTCGTTTCCTGAAATATCTGTAAATTTCACATGATTTTTTTTCAATAAATTTGCCGATTTTCAATTAATATCGATAATTTTGATTTGAATACTCGAAGAATTCCAGTTTTCATTCAGTCTTTCAGCACTTCACTTCAGATTTGATAAACCCCGCCCATTTGCAACCTGTGCGCAGAGTTTCCGCAAAGTGGCGCACGGTTCCCCTTTCTTTCCGATTCGTTTCTTTCCGTTTCGTTTCTTTCGCTTTCGTTTCTTACGGTTTCGTTTCTTTCGAATTTCAATTCTTTCCGATCGGTACGGTCTCCATTTTTACGACTCGCGTTTTGCGCGTAGACTTAAATGCCTACTCCGCAGTACTACGGTAAACAACGGTGTTTGCACCTCGCTCAGCCACGTCGAATTTTCAAAGCACTGCTCTCTGGTGTATTGGTTTTCGGGCTCTTTTTTCATCTATTTTTCTAGATTTTTAGAGATTTTTTATTGATTTCTAAGTTTTAAAATCGATTTCGCGGCCTAAAAAACCGTTTTAGTGCAAGGTTTCGGCTGGAAAACGGTTTAAAAAATAGACAATTTTC</canonical>
            <polymorphic>TTTTTTTCTTTCCATGAGATTCCAGTTCAATGTTCCCTTCTTCTCTCAACCAATCCACTTCACTTCTTATATATTCATATTCATTTTTTCAAATTTTAAATTTTTATTACTGTTACATTCCTACTACAGATTCCCTTTTATTTCGACCATTTTTTCCATTATTCTTTTATTTCGCCACGGCCTCGCTGAAGGGAACCTAGATTTAAAAATTGGAAAGCGCGCCAAGTTTGGACGCGTTGCGCGGTCGCGTCGCGGCTTTTCATTTTTTCCAGTTAAATTTTCATTTATTTTCTCAATTAATTATCCCTATTTCTTATGTGTTTCTCTTCATTTTTTGTCCTTATCACATTATTATCGGCATTCATTCGTTTTTTATCAAATTTATTCCAGAAATCATCATTTTCCGTCGCCAAAACTTCGTTCACCTCGTTTCCTGAAATATCTGTAAATTTCACATGATTTTTTTTCAATAAATTTGCCGATTTTCAATTAATATCGAWAATTTTGATTTGAATACTCGAAGAATTCCAGTTTTCATTCAGTCTTTCAGCACTTCACTTCAGATTTGATAAACCCCGCCCATTTGCAACCTGTGCGCAGAGTTTCCGCAAAGTGGCGCACGGTTCCCCTTTCTTTCCGATTCGTTTCTTTCCGTTTCGTTTCTTTCGCTTTCGTTTCTTACGGTTTCGTTTCTTTCGAATTTCAATTCTTTCCGATCGGTACGGTCTCCATTTTTACGACTCGCGTTTTGCGCGTAGACTTAAATGCCTACTCCGCAGTACTACGGTAAACAACGGTGTTTGCACCTCGCTCAGCCACGTCGAATTTTCAAAGCACTGCTCTCTGGTGTATTGGTTTTCGGGCTCTTTTTTCATCTATTTTTCTAGATTTTTAGAGATTTTTTATTGATTTCTAAGTTTTAAAATCGATTTCGCGGCCTAAAAAACCGTTTTAGTGCAAGGTTTCGGCTGGAAAACGGTTTAAAAAATAGACAATTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>496 430 74</canonical_bands>
                <polymorphic_bands>926 74</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCACCTCGTTTCCTGAAATA</pcr_primer_p1>
		<pcr_primer_p2>TTTAAGTCTACGCGCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>344</pcr_amplicon_size>
		<canonical_amplicon>TCACCTCGTTTCCTGAAATATCTGTAAATTTCACATGATTTTTTTTCAATAAATTTGCCGATTTTCAATTAATATCGATAATTTTGATTTGAATACTCGAAGAATTCCAGTTTTCATTCAGTCTTTCAGCACTTCACTTCAGATTTGATAAACCCCGCCCATTTGCAACCTGTGCGCAGAGTTTCCGCAAAGTGGCGCACGGTTCCCCTTTCTTTCCGATTCGTTTCTTTCCGTTTCGTTTCTTTCGCTTTCGTTTCTTACGGTTTCGTTTCTTTCGAATTTCAATTCTTTCCGATCGGTACGGTCTCCATTTTTACGACTCGCGTTTTGCGCGTAGACTTAAA</canonical_amplicon>
		<polymorphic_amplicon>TCACCTCGTTTCCTGAAATATCTGTAAATTTCACATGATTTTTTTTCAATAAATTTGCCGATTTTCAATTAATATCGAWAATTTTGATTTGAATACTCGAAGAATTCCAGTTTTCATTCAGTCTTTCAGCACTTCACTTCAGATTTGATAAACCCCGCCCATTTGCAACCTGTGCGCAGAGTTTCCGCAAAGTGGCGCACGGTTCCCCTTTCTTTCCGATTCGTTTCTTTCCGTTTCGTTTCTTTCGCTTTCGTTTCTTACGGTTTCGTTTCTTTCGAATTTCAATTCTTTCCGATCGGTACGGTCTCCATTTTTACGACTCGCGTTTTGCGCGTAGACTTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29842</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>118857</contig_pos>
        <strand></strand>
        <context>TCAGTCTTTC[A/T]GCACTTYACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATAATTTTGATTTGAATACTCGAAGAATTCCAGTTTTCATTCAGTCTTTC</left_flank>
        <right_flank>GCACTTCACTTCAGATTTGATAAACCCCGCCCATTTGCAACCTGTGCGCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAATCCACTTCACTTCTTATATATTCATATTCATTTTTTCAAATTTTAAATTTTTATTACTGTTACATTCCTACTACAGATTCCCTTTTATTTCGACCATTTTTTCCATTATTCTTTTATTTCGCCACGGCCTCGCTGAAGGGAACCTAGATTTAAAAATTGGAAAGCGCGCCAAGTTTGGACGCGTTGCGCGGTCGCGTCGCGGCTTTTCATTTTTTCCAGTTAAATTTTCATTTATTTTCTCAATTAATTATCCCTATTTCTTATGTGTTTCTCTTCATTTTTTGTCCTTATCACATTATTATCGGCATTCATTCGTTTTTTATCAAATTTATTCCAGAAATCATCATTTTCCGTCGCCAAAACTTCGTTCACCTCGTTTCCTGAAATATCTGTAAATTTCACATGATTTTTTTTCAATAAATTTGCCGATTTTCAATTAATATCGATAATTTTGATTTGAATACTCGAAGAATTCCAGTTTTCATTCAGTCTTTCAGCACTTCACTTCAGATTTGATAAACCCCGCCCATTTGCAACCTGTGCGCAGAGTTTCCGCAAAGTGGCGCACGGTTCCCCTTTCTTTCCGATTCGTTTCTTTCCGTTTCGTTTCTTTCGCTTTCGTTTCTTACGGTTTCGTTTCTTTCGAATTTCAATTCTTTCCGATCGGTACGGTCTCCATTTTTACGACTCGCGTTTTGCGCGTAGACTTAAATGCCTACTCCGCAGTACTACGGTAAACAACGGTGTTTGCACCTCGCTCAGCCACGTCGAATTTTCAAAGCACTGCTCTCTGGTGTATTGGTTTTCGGGCTCTTTTTTCATCTATTTTTCTAGATTTTTAGAGATTTTTTATTGATTTCTAAGTTTTAAAATCGATTTCGCGGCCTAAAAAACCGTTTTAGTGCAAGGTTTCGGCTGGAAAACGGTTTAAAAAATAGACAATTTTCGAAAAAAAAATTGTTTTCAAATTTTTTGTCATCAAAATAGATGTTGCGG</canonical>
            <polymorphic>CCAATCCACTTCACTTCTTATATATTCATATTCATTTTTTCAAATTTTAAATTTTTATTACTGTTACATTCCTACTACAGATTCCCTTTTATTTCGACCATTTTTTCCATTATTCTTTTATTTCGCCACGGCCTCGCTGAAGGGAACCTAGATTTAAAAATTGGAAAGCGCGCCAAGTTTGGACGCGTTGCGCGGTCGCGTCGCGGCTTTTCATTTTTTCCAGTTAAATTTTCATTTATTTTCTCAATTAATTATCCCTATTTCTTATGTGTTTCTCTTCATTTTTTGTCCTTATCACATTATTATCGGCATTCATTCGTTTTTTATCAAATTTATTCCAGAAATCATCATTTTCCGTCGCCAAAACTTCGTTCACCTCGTTTCCTGAAATATCTGTAAATTTCACATGATTTTTTTTCAATAAATTTGCCGATTTTCAATTAATATCGATAATTTTGATTTGAATACTCGAAGAATTCCAGTTTTCATTCAGTCTTTCWGCACTTCACTTCAGATTTGATAAACCCCGCCCATTTGCAACCTGTGCGCAGAGTTTCCGCAAAGTGGCGCACGGTTCCCCTTTCTTTCCGATTCGTTTCTTTCCGTTTCGTTTCTTTCGCTTTCGTTTCTTACGGTTTCGTTTCTTTCGAATTTCAATTCTTTCCGATCGGTACGGTCTCCATTTTTACGACTCGCGTTTTGCGCGTAGACTTAAATGCCTACTCCGCAGTACTACGGTAAACAACGGTGTTTGCACCTCGCTCAGCCACGTCGAATTTTCAAAGCACTGCTCTCTGGTGTATTGGTTTTCGGGCTCTTTTTTCATCTATTTTTCTAGATTTTTAGAGATTTTTTATTGATTTCTAAGTTTTAAAATCGATTTCGCGGCCTAAAAAACCGTTTTAGTGCAAGGTTTCGGCTGGAAAACGGTTTAAAAAATAGACAATTTTCGAAAAAAAAATTGTTTTCAAATTTTTTGTCATCAAAATAGATGTTGCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTGCCGATTTTCAATTA</pcr_primer_p1>
		<pcr_primer_p2>TTTAAGTCTACGCGCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>293</pcr_amplicon_size>
		<canonical_amplicon>AATTTGCCGATTTTCAATTAATATCGATAATTTTGATTTGAATACTCGAAGAATTCCAGTTTTCATTCAGTCTTTCAGCACTTCACTTCAGATTTGATAAACCCCGCCCATTTGCAACCTGTGCGCAGAGTTTCCGCAAAGTGGCGCACGGTTCCCCTTTCTTTCCGATTCGTTTCTTTCCGTTTCGTTTCTTTCGCTTTCGTTTCTTACGGTTTCGTTTCTTTCGAATTTCAATTCTTTCCGATCGGTACGGTCTCCATTTTTACGACTCGCGTTTTGCGCGTAGACTTAAA</canonical_amplicon>
		<polymorphic_amplicon>AATTTGCCGATTTTCAATTAATATCGATAATTTTGATTTGAATACTCGAAGAATTCCAGTTTTCATTCAGTCTTTCWGCACTTCACTTCAGATTTGATAAACCCCGCCCATTTGCAACCTGTGCGCAGAGTTTCCGCAAAGTGGCGCACGGTTCCCCTTTCTTTCCGATTCGTTTCTTTCCGTTTCGTTTCTTTCGCTTTCGTTTCTTACGGTTTCGTTTCTTTCGAATTTCAATTCTTTCCGATCGGTACGGTCTCCATTTTTACGACTCGCGTTTTGCGCGTAGACTTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29843</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>118864</contig_pos>
        <strand></strand>
        <context>TTCWGCACTT[C/T]ACTTCagatt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGATTTGAATACTCGAAGAATTCCAGTTTTCATTCAGTCTTTCAGCACTT</left_flank>
        <right_flank>ACTTCAGATTTGATAAACCCCGCCCATTTGCAACCTGTGCGCAGAGTTTC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTCACTTCTTATATATTCATATTCATTTTTTCAAATTTTAAATTTTTATTACTGTTACATTCCTACTACAGATTCCCTTTTATTTCGACCATTTTTTCCATTATTCTTTTATTTCGCCACGGCCTCGCTGAAGGGAACCTAGATTTAAAAATTGGAAAGCGCGCCAAGTTTGGACGCGTTGCGCGGTCGCGTCGCGGCTTTTCATTTTTTCCAGTTAAATTTTCATTTATTTTCTCAATTAATTATCCCTATTTCTTATGTGTTTCTCTTCATTTTTTGTCCTTATCACATTATTATCGGCATTCATTCGTTTTTTATCAAATTTATTCCAGAAATCATCATTTTCCGTCGCCAAAACTTCGTTCACCTCGTTTCCTGAAATATCTGTAAATTTCACATGATTTTTTTTCAATAAATTTGCCGATTTTCAATTAATATCGATAATTTTGATTTGAATACTCGAAGAATTCCAGTTTTCATTCAGTCTTTCAGCACTTCACTTCAGATTTGATAAACCCCGCCCATTTGCAACCTGTGCGCAGAGTTTCCGCAAAGTGGCGCACGGTTCCCCTTTCTTTCCGATTCGTTTCTTTCCGTTTCGTTTCTTTCGCTTTCGTTTCTTACGGTTTCGTTTCTTTCGAATTTCAATTCTTTCCGATCGGTACGGTCTCCATTTTTACGACTCGCGTTTTGCGCGTAGACTTAAATGCCTACTCCGCAGTACTACGGTAAACAACGGTGTTTGCACCTCGCTCAGCCACGTCGAATTTTCAAAGCACTGCTCTCTGGTGTATTGGTTTTCGGGCTCTTTTTTCATCTATTTTTCTAGATTTTTAGAGATTTTTTATTGATTTCTAAGTTTTAAAATCGATTTCGCGGCCTAAAAAACCGTTTTAGTGCAAGGTTTCGGCTGGAAAACGGTTTAAAAAATAGACAATTTTCGAAAAAAAAATTGTTTTCAAATTTTTTGTCATCAAAATAGATGTTGCGGGCTAATA</canonical>
            <polymorphic>ACTTCACTTCTTATATATTCATATTCATTTTTTCAAATTTTAAATTTTTATTACTGTTACATTCCTACTACAGATTCCCTTTTATTTCGACCATTTTTTCCATTATTCTTTTATTTCGCCACGGCCTCGCTGAAGGGAACCTAGATTTAAAAATTGGAAAGCGCGCCAAGTTTGGACGCGTTGCGCGGTCGCGTCGCGGCTTTTCATTTTTTCCAGTTAAATTTTCATTTATTTTCTCAATTAATTATCCCTATTTCTTATGTGTTTCTCTTCATTTTTTGTCCTTATCACATTATTATCGGCATTCATTCGTTTTTTATCAAATTTATTCCAGAAATCATCATTTTCCGTCGCCAAAACTTCGTTCACCTCGTTTCCTGAAATATCTGTAAATTTCACATGATTTTTTTTCAATAAATTTGCCGATTTTCAATTAATATCGATAATTTTGATTTGAATACTCGAAGAATTCCAGTTTTCATTCAGTCTTTCAGCACTTYACTTCAGATTTGATAAACCCCGCCCATTTGCAACCTGTGCGCAGAGTTTCCGCAAAGTGGCGCACGGTTCCCCTTTCTTTCCGATTCGTTTCTTTCCGTTTCGTTTCTTTCGCTTTCGTTTCTTACGGTTTCGTTTCTTTCGAATTTCAATTCTTTCCGATCGGTACGGTCTCCATTTTTACGACTCGCGTTTTGCGCGTAGACTTAAATGCCTACTCCGCAGTACTACGGTAAACAACGGTGTTTGCACCTCGCTCAGCCACGTCGAATTTTCAAAGCACTGCTCTCTGGTGTATTGGTTTTCGGGCTCTTTTTTCATCTATTTTTCTAGATTTTTAGAGATTTTTTATTGATTTCTAAGTTTTAAAATCGATTTCGCGGCCTAAAAAACCGTTTTAGTGCAAGGTTTCGGCTGGAAAACGGTTTAAAAAATAGACAATTTTCGAAAAAAAAATTGTTTTCAAATTTTTTGTCATCAAAATAGATGTTGCGGGCTAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>179 143 115 108 99 98 78 38 30 26 20 18 13 13 6 6 5 5</canonical_bands>
                <polymorphic_bands>179 143 115 108 99 98 78 43 30 26 20 18 13 13 6 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGATTTGAATACTCGAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTTAAGTCTACGCGCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGATTTGAATACTCGAAGAATTCCAGTTTTCATTCAGTCTTTCAGCACTTCACTTCAGATTTGATAAACCCCGCCCATTTGCAACCTGTGCGCAGAGTTTCCGCAAAGTGGCGCACGGTTCCCCTTTCTTTCCGATTCGTTTCTTTCCGTTTCGTTTCTTTCGCTTTCGTTTCTTACGGTTTCGTTTCTTTCGAATTTCAATTCTTTCCGATCGGTACGGTCTCCATTTTTACGACTCGCGTTTTGCGCGTAGACTTAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGATTTGAATACTCGAAGAATTCCAGTTTTCATTCAGTCTTTCAGCACTTYACTTCAGATTTGATAAACCCCGCCCATTTGCAACCTGTGCGCAGAGTTTCCGCAAAGTGGCGCACGGTTCCCCTTTCTTTCCGATTCGTTTCTTTCCGTTTCGTTTCTTTCGCTTTCGTTTCTTACGGTTTCGTTTCTTTCGAATTTCAATTCTTTCCGATCGGTACGGTCTCCATTTTTACGACTCGCGTTTTGCGCGTAGACTTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29844</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>118897</contig_pos>
        <strand></strand>
        <context>cccatttgca[A/G]cctgtgcgca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAGTCTTTCAGCACTTCACTTCAGATTTGATAAACCCCGCCCATTTGCA</left_flank>
        <right_flank>CCTGTGCGCAGAGTTTCCGCAAAGTGGCGCACGGTTCCCCTTTCTTTCCG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATTTTAAATTTTTATTACTGTTACATTCCTACTACAGATTCCCTTTTATTTCGACCATTTTTTCCATTATTCTTTTATTTCGCCACGGCCTCGCTGAAGGGAACCTAGATTTAAAAATTGGAAAGCGCGCCAAGTTTGGACGCGTTGCGCGGTCGCGTCGCGGCTTTTCATTTTTTCCAGTTAAATTTTCATTTATTTTCTCAATTAATTATCCCTATTTCTTATGTGTTTCTCTTCATTTTTTGTCCTTATCACATTATTATCGGCATTCATTCGTTTTTTATCAAATTTATTCCAGAAATCATCATTTTCCGTCGCCAAAACTTCGTTCACCTCGTTTCCTGAAATATCTGTAAATTTCACATGATTTTTTTTCAATAAATTTGCCGATTTTCAATTAATATCGATAATTTTGATTTGAATACTCGAAGAATTCCAGTTTTCATTCAGTCTTTCAGCACTTCACTTCAGATTTGATAAACCCCGCCCATTTGCAACCTGTGCGCAGAGTTTCCGCAAAGTGGCGCACGGTTCCCCTTTCTTTCCGATTCGTTTCTTTCCGTTTCGTTTCTTTCGCTTTCGTTTCTTACGGTTTCGTTTCTTTCGAATTTCAATTCTTTCCGATCGGTACGGTCTCCATTTTTACGACTCGCGTTTTGCGCGTAGACTTAAATGCCTACTCCGCAGTACTACGGTAAACAACGGTGTTTGCACCTCGCTCAGCCACGTCGAATTTTCAAAGCACTGCTCTCTGGTGTATTGGTTTTCGGGCTCTTTTTTCATCTATTTTTCTAGATTTTTAGAGATTTTTTATTGATTTCTAAGTTTTAAAATCGATTTCGCGGCCTAAAAAACCGTTTTAGTGCAAGGTTTCGGCTGGAAAACGGTTTAAAAAATAGACAATTTTCGAAAAAAAAATTGTTTTCAAATTTTTTGTCATCAAAATAGATGTTGCGGGCTAATATTGAGTATTAATCCGTTTTAGAGAACGTTTTTG</canonical>
            <polymorphic>CAAATTTTAAATTTTTATTACTGTTACATTCCTACTACAGATTCCCTTTTATTTCGACCATTTTTTCCATTATTCTTTTATTTCGCCACGGCCTCGCTGAAGGGAACCTAGATTTAAAAATTGGAAAGCGCGCCAAGTTTGGACGCGTTGCGCGGTCGCGTCGCGGCTTTTCATTTTTTCCAGTTAAATTTTCATTTATTTTCTCAATTAATTATCCCTATTTCTTATGTGTTTCTCTTCATTTTTTGTCCTTATCACATTATTATCGGCATTCATTCGTTTTTTATCAAATTTATTCCAGAAATCATCATTTTCCGTCGCCAAAACTTCGTTCACCTCGTTTCCTGAAATATCTGTAAATTTCACATGATTTTTTTTCAATAAATTTGCCGATTTTCAATTAATATCGATAATTTTGATTTGAATACTCGAAGAATTCCAGTTTTCATTCAGTCTTTCAGCACTTCACTTCAGATTTGATAAACCCCGCCCATTTGCARCCTGTGCGCAGAGTTTCCGCAAAGTGGCGCACGGTTCCCCTTTCTTTCCGATTCGTTTCTTTCCGTTTCGTTTCTTTCGCTTTCGTTTCTTACGGTTTCGTTTCTTTCGAATTTCAATTCTTTCCGATCGGTACGGTCTCCATTTTTACGACTCGCGTTTTGCGCGTAGACTTAAATGCCTACTCCGCAGTACTACGGTAAACAACGGTGTTTGCACCTCGCTCAGCCACGTCGAATTTTCAAAGCACTGCTCTCTGGTGTATTGGTTTTCGGGCTCTTTTTTCATCTATTTTTCTAGATTTTTAGAGATTTTTTATTGATTTCTAAGTTTTAAAATCGATTTCGCGGCCTAAAAAACCGTTTTAGTGCAAGGTTTCGGCTGGAAAACGGTTTAAAAAATAGACAATTTTCGAAAAAAAAATTGTTTTCAAATTTTTTGTCATCAAAATAGATGTTGCGGGCTAATATTGAGTATTAATCCGTTTTAGAGAACGTTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAATTCCAGTTTTCATTCAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTTAAGTCTACGCGCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAGAATTCCAGTTTTCATTCAGTCTTTCAGCACTTCACTTCAGATTTGATAAACCCCGCCCATTTGCAACCTGTGCGCAGAGTTTCCGCAAAGTGGCGCACGGTTCCCCTTTCTTTCCGATTCGTTTCTTTCCGTTTCGTTTCTTTCGCTTTCGTTTCTTACGGTTTCGTTTCTTTCGAATTTCAATTCTTTCCGATCGGTACGGTCTCCATTTTTACGACTCGCGTTTTGCGCGTAGACTTAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAGAATTCCAGTTTTCATTCAGTCTTTCAGCACTTCACTTCAGATTTGATAAACCCCGCCCATTTGCARCCTGTGCGCAGAGTTTCCGCAAAGTGGCGCACGGTTCCCCTTTCTTTCCGATTCGTTTCTTTCCGTTTCGTTTCTTTCGCTTTCGTTTCTTACGGTTTCGTTTCTTTCGAATTTCAATTCTTTCCGATCGGTACGGTCTCCATTTTTACGACTCGCGTTTTGCGCGTAGACTTAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29845</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>122976</contig_pos>
        <strand></strand>
        <context>AAATattaca[A/G]aactggtggc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCTGTTTTAGCCTTGAAAAATCATTATTTTTGGTATTAAAAATATTACA</left_flank>
        <right_flank>AACTGGTGGCCTAGAAAATCCAAAAAATTTTGGTTTCTAGGCCATGGGAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCTTCGTCTCGCTTCTCTTGGGAATGCTCTACGTGAAGAGAAACAGTCTGGACTTCCTTTTCAACAGAACCATGTGGGGATTCGTTTGCATGGCTATCACCTTCATTTTCATGTCTGGACAAATGTGGAATCACATTCGTGGACCACCATTCATGATCACCAATCCAAACACCAAGGAGCCATCGTTCATCCATGGATCCACACAATTCCAGCTGATTGCTGAGACCTACATTGTTGGAATTCTCTATGCTCTCGTCGCCGTTGGATTCATTTGTGTCAACGAGGCAGCTGATCAGGCTAACGGAAAGGATAAGAAGAATCAGCAGAAGAAGGCTAACCCGTTGTCAAGCCTTTTTAGCATTCCAGCTAATAGTGAGTTTTTGGCCTTGAAAGTAGCTATCTTGCTCTAGAAAGAGCTATTTTTGCCCTGAAAATGAGCCTAAAAAGTGCTGTTTTAGCCTTGAAAAATCATTATTTTTGGTATTAAAAATATTACAAAACTGGTGGCCTAGAAAATCCAAAAAATTTTGGTTTCTAGGCCATGGGAATTTTTGACCAAATTGCAGAGTATTCCAAATTCTATTTATTAGTGTTTCGAAGCTAGAAAATATGATTTTTCAATCTAGATACACAAATTTAAAGCTTGTGGCCTAGAAATCCGAAAATTTGGGTTTCTAGGCCATCACTTTCCTAACAGCGTAATCTTTGAAAATGGCTATTTTTAGCCTCGAAAATGTCTATTTTTGCTCAAAATTCGTATAAAACATCCCGAATTGCTCCAATAATGCTGTGAAATTTCCAGCTCTCGCCATCGTCGGACTCGTCTTCATCTGCGTCTTCTTCTCGTTCCTGCTCTCAGTGTTCCGCTCCAAATACCGTGGATACCCATACTCTTTCTTGTTCTCGTAAGCCCCGCCCCCTTCTTTTAGATCCATTGCCGCCAACAGAAATCTGTGTTTTTTCTTCTTAAATTAATAATTTTTTTCTTTTTTCTCTCT</canonical>
            <polymorphic>TCTCTTCGTCTCGCTTCTCTTGGGAATGCTCTACGTGAAGAGAAACAGTCTGGACTTCCTTTTCAACAGAACCATGTGGGGATTCGTTTGCATGGCTATCACCTTCATTTTCATGTCTGGACAAATGTGGAATCACATTCGTGGACCACCATTCATGATCACCAATCCAAACACCAAGGAGCCATCGTTCATCCATGGATCCACACAATTCCAGCTGATTGCTGAGACCTACATTGTTGGAATTCTCTATGCTCTCGTCGCCGTTGGATTCATTTGTGTCAACGAGGCAGCTGATCAGGCTAACGGAAAGGATAAGAAGAATCAGCAGAAGAAGGCTAACCCGTTGTCAAGCCTTTTTAGCATTCCAGCTAATAGTGAGTTTTTGGCCTTGAAAGTAGCTATCTTGCTCTAGAAAGAGCTATTTTTGCCCTGAAAATGAGCCTAAAAAGTGCTGTTTTAGCCTTGAAAAATCATTATTTTTGGTATTAAAAATATTACARAACTGGTGGCCTAGAAAATCCAAAAAATTTTGGTTTCTAGGCCATGGGAATTTTTGACCAAATTGCAGAGTATTCCAAATTCTATTTATTAGTGTTTCGAAGCTAGAAAATATGATTTTTCAATCTAGATACACAAATTTAAAGCTTGTGGCCTAGAAATCCGAAAATTTGGGTTTCTAGGCCATCACTTTCCTAACAGCGTAATCTTTGAAAATGGCTATTTTTAGCCTCGAAAATGTCTATTTTTGCTCAAAATTCGTATAAAACATCCCGAATTGCTCCAATAATGCTGTGAAATTTCCAGCTCTCGCCATCGTCGGACTCGTCTTCATCTGCGTCTTCTTCTCGTTCCTGCTCTCAGTGTTCCGCTCCAAATACCGTGGATACCCATACTCTTTCTTGTTCTCGTAAGCCCCGCCCCCTTCTTTTAGATCCATTGCCGCCAACAGAAATCTGTGTTTTTTCTTCTTAAATTAATAATTTTTTTCTTTTTTCTCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTGTTTTAGCCTTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GGATGTTTTATACGAATTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>GCTGTTTTAGCCTTGAAAAATCATTATTTTTGGTATTAAAAATATTACAAAACTGGTGGCCTAGAAAATCCAAAAAATTTTGGTTTCTAGGCCATGGGAATTTTTGACCAAATTGCAGAGTATTCCAAATTCTATTTATTAGTGTTTCGAAGCTAGAAAATATGATTTTTCAATCTAGATACACAAATTTAAAGCTTGTGGCCTAGAAATCCGAAAATTTGGGTTTCTAGGCCATCACTTTCCTAACAGCGTAATCTTTGAAAATGGCTATTTTTAGCCTCGAAAATGTCTATTTTTGCTCAAAATTCGTATAAAACATCC</canonical_amplicon>
		<polymorphic_amplicon>GCTGTTTTAGCCTTGAAAAATCATTATTTTTGGTATTAAAAATATTACARAACTGGTGGCCTAGAAAATCCAAAAAATTTTGGTTTCTAGGCCATGGGAATTTTTGACCAAATTGCAGAGTATTCCAAATTCTATTTATTAGTGTTTCGAAGCTAGAAAATATGATTTTTCAATCTAGATACACAAATTTAAAGCTTGTGGCCTAGAAATCCGAAAATTTGGGTTTCTAGGCCATCACTTTCCTAACAGCGTAATCTTTGAAAATGGCTATTTTTAGCCTCGAAAATGTCTATTTTTGCTCAAAATTCGTATAAAACATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29846</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>142667</contig_pos>
        <strand>-</strand>
        <context>TTWCATGATT[C/T]TCTGgatccc</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTAGAAGGTGTTGTTCCACATTATTCTGCAAGAATAGAAATTGCATGATT</left_flank>
        <right_flank>TCTGGATCCCTAGCAAAAAGTGGTCAACTAACAAAATGTAGCTCTTTAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTACGTGATTTTCATCACGGGAGAAGTAGCTAAAACTAGAAGAAGTTTCTAGAAGGTGTTTTCAGCCAAAAAGTTACTTACCCCTTGACAATATGTGGATACTTTTGCCTAAACCAAGCGGACAGCATTCCACCGTAAGATCCACCGAAAGAAATGACTTGTGAATCCCTATGGAACGTCTTCCCGAATTGATTATTGTCTCTCTTCAACTCAGTCAAAAGTTCTGCATAATCAGCCAGAGCCTGTTCACTAGTCAAGTATCCAACATTGGCTAGATTAGCATAAGATTGATTTCCGAATGGCTGAGTGGCTCCGTAGAATCTGTGCTCGGCGAAAATGATGGAAGCATTGAACATTGGTGCCAGGTCAAACATCATTCCAGTCGCAACTTCGAATGTCGACACTGCTCCCTCGTTTCCAGTGTAGAAGAAGATGGGACCGCCCGGTTGGTAGAAGGTGTTGTTCCACATTATTCTGCAAGAATAGAAATTGCATGATTATCTGGATCCCTAGCAAAAAGTGGTCAACTAACAAAATGTAGCTCTTTAAATTCTACATATTTTTGTAGTTCACAACTTTTTCATAGCTAGCTTAGTTTTGGAGATATGCGCTTTTAAAGACTACGCACTCATCAGGAGGGAGGAAGTGGCACGATATAGACGCAGAACTCGATAAGCCTATTAACTAGGAAAAATATATCAACTAACAAAGTTTGTAAAATTTCAAGATCTTCAGATTTTTAGTTTACAAATTTACAATAGCTAGCTAACTTTTGGAGATAAGAGGCTTTAAAGATTGCGCGCGCCTCTTGCAGCCCTCCAAGAGAAAGCGGCAAGAGGTGAGCGATCTTTAAAGGCGCATAACTCGCAAACAAGATTAGCTATTTAAAATCTGTCAACTAACAAAATTTGGGAAATTTTAAGGGCTACATGTTTTCAGTTTACAAATGCTTGATATCAAGCTTGGTTCTGGTCTAGGACTTCTGGAGATATGCGCCTTT</canonical>
            <polymorphic>TTACGTGATTTTCATCACGGGAGAAGTAGCTAAAACTAGAAGAAGTTTCTAGAAGGTGTTTTCAGCCAAAAAGTTACTTACCCCTTGACAATATGTGGATACTTTTGCCTAAACCAAGCGGACAGCATTCCACCGTAAGATCCACCGAAAGAAATGACTTGTGAATCCCTATGGAACGTCTTCCCGAATTGATTATTGTCTCTCTTCAACTCAGTCAAAAGTTCTGCATAATCAGCCAGAGCCTGTTCACTAGTCAAGTATCCAACATTGGCTAGATTAGCATAAGATTGATTTCCGAATGGCTGAGTGGCTCCGTAGAATCTGTGCTCGGCGAAAATGATGGAAGCATTGAACATTGGTGCCAGGTCAAACATCATTCCAGTCGCAACTTCGAATGTCGACACTGCTCCCTCGTTTCCAGTGTAGAAGAAGATGGGACCGCCCGGTTGGTAGAAGGTGTTGTTCCACATTATTCTGCAAGAATAGAAATTGCATGATTYTCTGGATCCCTAGCAAAAAGTGGTCAACTAACAAAATGTAGCTCTTTAAATTCTACATATTTTTGTAGTTCACAACTTTTTCATAGCTAGCTTAGTTTTGGAGATATGCGCTTTTAAAGACTACGCACTCATCAGGAGGGAGGAAGTGGCACGATATAGACGCAGAACTCGATAAGCCTATTAACTAGGAAAAATATATCAACTAACAAAGTTTGTAAAATTTCAAGATCTTCAGATTTTTAGTTTACAAATTTACAATAGCTAGCTAACTTTTGGAGATAAGAGGCTTTAAAGATTGCGCGCGCCTCTTGCAGCCCTCCAAGAGAAAGCGGCAAGAGGTGAGCGATCTTTAAAGGCGCATAACTCGCAAACAAGATTAGCTATTTAAAATCTGTCAACTAACAAAATTTGGGAAATTTTAAGGGCTACATGTTTTCAGTTTACAAATGCTTGATATCAAGCTTGGTTCTGGTCTAGGACTTCTGGAGATATGCGCCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTTCCAGTGTAGAAGAAGAT</pcr_primer_p1>
		<pcr_primer_p2>CAGGACTTTTGATATGAGGTTAG</pcr_primer_p2>
		<pcr_amplicon_size>898</pcr_amplicon_size>
		<canonical_amplicon>CGTTTCCAGTGTAGAAGAAGATGGGACCGCCCGGTTGGTAGAAGGTGTTGTTCCACATTATTCTGCAAGAATAGAAATTGCATGATTATCTGGATCCCTAGCAAAAAGTG</canonical_amplicon>
		<polymorphic_amplicon>CGTTTCCAGTGTAGAAGAAGATGGGACCGCCCGGTTGGTAGAAGGTGTTGTTCCACATTATTCTGCAAGAATAGAAATTGCATGATTYTCTGGATCCCTAGCAAAAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29847</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>144303</contig_pos>
        <strand></strand>
        <context>TTTACCAAAA[T/A]GTTGACAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GTATACTTTTGTCCGCATCTCTATCTCTTAGGCAAGTGATTTTACCAAAA</left_flank>
        <right_flank>GTTGACAACTACAAAAAGTTGTAGAGATCGGAGACTCAGAGTAGGCGGCG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAAGAGACAATACTAAACAGACGAATCTTTTTTTTGAGGTTGGTTGATAAGAATTGAAAATTTGAAGAGCAGCGGTAAAAGAACAGGAACCGAGCAGCGCCAAACCAAACCAATAAACTTTGAACCCCCACGAAAATTATCACATTCCATATTCCAATTTTTCTGAAATTTTCAGAATATACTAAACAAAAATAGAGCTTCAATTTTGTAATTGACAACTTTTCAGGATAATCAATACCTGAAGAGATTGAGACGCAGACAGTCAGAGTGTCTCGCTGTCTGGCCAGCAAGGAGCTTCTAGGAAGGCTAGCTTGGCTCCTAGAAAAACTAGAAAAGTGATTTTCGGCCCAAAAGCTAGATTTTGACTATTTTCAAAACATTTCCCAATGAAAACCTCTTTATAGCTCTATAGCCAAGACAGCCAAGATATGGCTTTTTGAAGTTTAAGTATACTTTTGTCCGCATCTCTATCTCTTAGGCAAGTGATTTTACCAAAATGTTGACAACTACAAAAAGTTGTAGAGATCGGAGACTCAGAGTAGGCGGCGGTTTTTTCATGTCTGCAAACAAAAGGGACAGAGGCTGTTTAATAGAAAATGAGGAATTTGAAAAAAAAAAATTTTTTTTGAATTATTTTTGGATTTTCGATTTTTATTCCTTTCGGATTTTTGGATTTTTGAATTTAATGATTTTTAAAACGATTTTTTAAATTCTTGAAACTTTTTCGGAACATTTTTGAAACCTTCTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTCTAGAACTTTTTTGGCTTTTCAAATTTAAGAAATTGAATCTTTATAGCAAATTTTAAAGAAGTAACATAGTTTACATGAAATAAAAAGTAAAGGATAAAGAAAAAAGAAAGCGAATAGGGAAA</canonical>
            <polymorphic>ACAAAGAGACAATACTAAACAGACGAATCTTTTTTTTGAGGTTGGTTGATAAGAATTGAAAATTTGAAGAGCAGCGGTAAAAGAACAGGAACCGAGCAGCGCCAAACCAAACCAATAAACTTTGAACCCCCACGAAAATTATCACATTCCATATTCCAATTTTTCTGAAATTTTCAGAATATACTAAACAAAAATAGAGCTTCAATTTTGTAATTGACAACTTTTCAGGATAATCAATACCTGAAGAGATTGAGACGCAGACAGTCAGAGTGTCTCGCTGTCTGGCCAGCAAGGAGCTTCTAGGAAGGCTAGCTTGGCTCCTAGAAAAACTAGAAAAGTGATTTTCGGCCCAAAAGCTAGATTTTGACTATTTTCAAAACATTTCCCAATGAAAACCTCTTTATAGCTCTATAGCCAAGACAGCCAAGATATGGCTTTTTGAAGTTTAAGTATACTTTTGTCCGCATCTCTATCTCTTAGGCAAGTGATTTTACCAAAAWGTTGACAACTACAAAAAGTTGTAGAGATCGGAGACTCAGAGTAGGCGGCGGTTTTTTCATGTCTGCAAACAAAAGGGACAGAGGCTGTTTAATAGAAAATGAGGAATTTGAAAAAAAAAAATTTTTTTTGAATTATTTTTGGATTTTCGATTTTTATTCCTTTCGGATTTTTGGATTTTTGAATTTAATGATTTTTAAAACGATTTTTTAAATTCTTGAAACTTTTTCGGAACATTTTTGAAACCTTCTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTCTAGAACTTTTTTGGCTTTTCAAATTTAAGAAATTGAATCTTTATAGCAAATTTTAAAGAAGTAACATAGTTTACATGAAATAAAAAGTAAAGGATAAAGAAAAAAGAAAGCGAATAGGGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGATATGGCTTTTTGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>AAAATCCGAAAGGAATAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAAGATATGGCTTTTTGAAGTTTAAGTATACTTTTGTCCGCATCTCTATCTCTTAGGCAAGTGATTTTACCAAAATGTTGACAACTACAAAAAGTTGTAGAGATCGGAGACTCAGAGTAGGCGGCGGTTTTTTCATGTCTGCAAACAAAAGGGACAGAGGCTGTTTAATAGAAAATGAGGAATTTGAAAAAAAAAAATTTTTTTTGAATTATTTTTGGATTTTCGATTTTTATTCCTTTCGGATTTT</canonical_amplicon>
		<polymorphic_amplicon>CAAGATATGGCTTTTTGAAGTTTAAGTATACTTTTGTCCGCATCTCTATCTCTTAGGCAAGTGATTTTACCAAAAWGTTGACAACTACAAAAAGTTGTAGAGATCGGAGACTCAGAGTAGGCGGCGGTTTTTTCATGTCTGCAAACAAAAGGGACAGAGGCTGTTTAATAGAAAATGAGGAATTTGAAAAAAAAAAATTTTTTTTGAATTATTTTTGGATTTTCGATTTTTATTCCTTTCGGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29848</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>144543</contig_pos>
        <strand></strand>
        <context>GAACATTTTT[G/A]AAAYCTTCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GATTTTTAAAACGATTTTTTAAATTCTTGAAACTTTTTCGGAACATTTTT</left_flank>
        <right_flank>AAACCTTCTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAAGAGATTGAGACGCAGACAGTCAGAGTGTCTCGCTGTCTGGCCAGCAAGGAGCTTCTAGGAAGGCTAGCTTGGCTCCTAGAAAAACTAGAAAAGTGATTTTCGGCCCAAAAGCTAGATTTTGACTATTTTCAAAACATTTCCCAATGAAAACCTCTTTATAGCTCTATAGCCAAGACAGCCAAGATATGGCTTTTTGAAGTTTAAGTATACTTTTGTCCGCATCTCTATCTCTTAGGCAAGTGATTTTACCAAAATGTTGACAACTACAAAAAGTTGTAGAGATCGGAGACTCAGAGTAGGCGGCGGTTTTTTCATGTCTGCAAACAAAAGGGACAGAGGCTGTTTAATAGAAAATGAGGAATTTGAAAAAAAAAAATTTTTTTTGAATTATTTTTGGATTTTCGATTTTTATTCCTTTCGGATTTTTGGATTTTTGAATTTAATGATTTTTAAAACGATTTTTTAAATTCTTGAAACTTTTTCGGAACATTTTTGAAACCTTCTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTCTAGAACTTTTTTGGCTTTTCAAATTTAAGAAATTGAATCTTTATAGCAAATTTTAAAGAAGTAACATAGTTTACATGAAATAAAAAGTAAAGGATAAAGAAAAAAGAAAGCGAATAGGGAAAATTGTGTTGGACTTCGGATCGTTGAAGACTCGAAGGATATCCACCTTCTGGGTACTTCAGTTTGATATTGTGATGTCCGTGCATCTTCCTTTTCCAAAACCAAACTAAGCGCTGAAAACGAATTTATTAAACAGAAATATTTCAAAATCTACTTACGTTTTTGCGGATTCCTTGCAAATTCCGTCGATGATCACTGTTCGGTTAGCTTTTGCGTTATCGAGATGAATTGGTCGAACCTCG</canonical>
            <polymorphic>CTGAAGAGATTGAGACGCAGACAGTCAGAGTGTCTCGCTGTCTGGCCAGCAAGGAGCTTCTAGGAAGGCTAGCTTGGCTCCTAGAAAAACTAGAAAAGTGATTTTCGGCCCAAAAGCTAGATTTTGACTATTTTCAAAACATTTCCCAATGAAAACCTCTTTATAGCTCTATAGCCAAGACAGCCAAGATATGGCTTTTTGAAGTTTAAGTATACTTTTGTCCGCATCTCTATCTCTTAGGCAAGTGATTTTACCAAAATGTTGACAACTACAAAAAGTTGTAGAGATCGGAGACTCAGAGTAGGCGGCGGTTTTTTCATGTCTGCAAACAAAAGGGACAGAGGCTGTTTAATAGAAAATGAGGAATTTGAAAAAAAAAAATTTTTTTTGAATTATTTTTGGATTTTCGATTTTTATTCCTTTCGGATTTTTGGATTTTTGAATTTAATGATTTTTAAAACGATTTTTTAAATTCTTGAAACTTTTTCGGAACATTTTTRAAACCTTCTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTCTAGAACTTTTTTGGCTTTTCAAATTTAAGAAATTGAATCTTTATAGCAAATTTTAAAGAAGTAACATAGTTTACATGAAATAAAAAGTAAAGGATAAAGAAAAAAGAAAGCGAATAGGGAAAATTGTGTTGGACTTCGGATCGTTGAAGACTCGAAGGATATCCACCTTCTGGGTACTTCAGTTTGATATTGTGATGTCCGTGCATCTTCCTTTTCCAAAACCAAACTAAGCGCTGAAAACGAATTTATTAAACAGAAATATTTCAAAATCTACTTACGTTTTTGCGGATTCCTTGCAAATTCCGTCGATGATCACTGTTCGGTTAGCTTTTGCGTTATCGAGATGAATTGGTCGAACCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTCGATTTTTATTCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCTAGTGTCTTTCAACTACTG</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GATTTTCGATTTTTATTCCTTTCGGATTTTTGGATTTTTGAATTTAATGATTTTTAAAACGATTTTTTAAATTCTTGAAACTTTTTCGGAACATTTTTGAAACCTTCTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>GATTTTCGATTTTTATTCCTTTCGGATTTTTGGATTTTTGAATTTAATGATTTTTAAAACGATTTTTTAAATTCTTGAAACTTTTTCGGAACATTTTTRAAACCTTCTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29849</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>144547</contig_pos>
        <strand></strand>
        <context>ATTTTTRAAA[C/T]CTTCTTGGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTAAAACGATTTTTTAAATTCTTGAAACTTTTTCGGAACATTTTTGAAA</left_flank>
        <right_flank>CTTCTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTT</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGATTGAGACGCAGACAGTCAGAGTGTCTCGCTGTCTGGCCAGCAAGGAGCTTCTAGGAAGGCTAGCTTGGCTCCTAGAAAAACTAGAAAAGTGATTTTCGGCCCAAAAGCTAGATTTTGACTATTTTCAAAACATTTCCCAATGAAAACCTCTTTATAGCTCTATAGCCAAGACAGCCAAGATATGGCTTTTTGAAGTTTAAGTATACTTTTGTCCGCATCTCTATCTCTTAGGCAAGTGATTTTACCAAAATGTTGACAACTACAAAAAGTTGTAGAGATCGGAGACTCAGAGTAGGCGGCGGTTTTTTCATGTCTGCAAACAAAAGGGACAGAGGCTGTTTAATAGAAAATGAGGAATTTGAAAAAAAAAAATTTTTTTTGAATTATTTTTGGATTTTCGATTTTTATTCCTTTCGGATTTTTGGATTTTTGAATTTAATGATTTTTAAAACGATTTTTTAAATTCTTGAAACTTTTTCGGAACATTTTTGAAACCTTCTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTCTAGAACTTTTTTGGCTTTTCAAATTTAAGAAATTGAATCTTTATAGCAAATTTTAAAGAAGTAACATAGTTTACATGAAATAAAAAGTAAAGGATAAAGAAAAAAGAAAGCGAATAGGGAAAATTGTGTTGGACTTCGGATCGTTGAAGACTCGAAGGATATCCACCTTCTGGGTACTTCAGTTTGATATTGTGATGTCCGTGCATCTTCCTTTTCCAAAACCAAACTAAGCGCTGAAAACGAATTTATTAAACAGAAATATTTCAAAATCTACTTACGTTTTTGCGGATTCCTTGCAAATTCCGTCGATGATCACTGTTCGGTTAGCTTTTGCGTTATCGAGATGAATTGGTCGAACCTCGAGAC</canonical>
            <polymorphic>AGAGATTGAGACGCAGACAGTCAGAGTGTCTCGCTGTCTGGCCAGCAAGGAGCTTCTAGGAAGGCTAGCTTGGCTCCTAGAAAAACTAGAAAAGTGATTTTCGGCCCAAAAGCTAGATTTTGACTATTTTCAAAACATTTCCCAATGAAAACCTCTTTATAGCTCTATAGCCAAGACAGCCAAGATATGGCTTTTTGAAGTTTAAGTATACTTTTGTCCGCATCTCTATCTCTTAGGCAAGTGATTTTACCAAAATGTTGACAACTACAAAAAGTTGTAGAGATCGGAGACTCAGAGTAGGCGGCGGTTTTTTCATGTCTGCAAACAAAAGGGACAGAGGCTGTTTAATAGAAAATGAGGAATTTGAAAAAAAAAAATTTTTTTTGAATTATTTTTGGATTTTCGATTTTTATTCCTTTCGGATTTTTGGATTTTTGAATTTAATGATTTTTAAAACGATTTTTTAAATTCTTGAAACTTTTTCGGAACATTTTTGAAAYCTTCTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTCTAGAACTTTTTTGGCTTTTCAAATTTAAGAAATTGAATCTTTATAGCAAATTTTAAAGAAGTAACATAGTTTACATGAAATAAAAAGTAAAGGATAAAGAAAAAAGAAAGCGAATAGGGAAAATTGTGTTGGACTTCGGATCGTTGAAGACTCGAAGGATATCCACCTTCTGGGTACTTCAGTTTGATATTGTGATGTCCGTGCATCTTCCTTTTCCAAAACCAAACTAAGCGCTGAAAACGAATTTATTAAACAGAAATATTTCAAAATCTACTTACGTTTTTGCGGATTCCTTGCAAATTCCGTCGATGATCACTGTTCGGTTAGCTTTTGCGTTATCGAGATGAATTGGTCGAACCTCGAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTCGATTTTTATTCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCTAGTGTCTTTCAACTACTG</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GATTTTCGATTTTTATTCCTTTCGGATTTTTGGATTTTTGAATTTAATGATTTTTAAAACGATTTTTTAAATTCTTGAAACTTTTTCGGAACATTTTTGAAACCTTCTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>GATTTTCGATTTTTATTCCTTTCGGATTTTTGGATTTTTGAATTTAATGATTTTTAAAACGATTTTTTAAATTCTTGAAACTTTTTCGGAACATTTTTGAAAYCTTCTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29850</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>144585</contig_pos>
        <strand></strand>
        <context>ATTTGGAATT[G/T]TTYATAGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACATTTTTGAAACCTTCTTGGATTTTTGAACATTTTAGAAATTTGGAATT</left_flank>
        <right_flank>TTTATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAAT</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCCAGCAAGGAGCTTCTAGGAAGGCTAGCTTGGCTCCTAGAAAAACTAGAAAAGTGATTTTCGGCCCAAAAGCTAGATTTTGACTATTTTCAAAACATTTCCCAATGAAAACCTCTTTATAGCTCTATAGCCAAGACAGCCAAGATATGGCTTTTTGAAGTTTAAGTATACTTTTGTCCGCATCTCTATCTCTTAGGCAAGTGATTTTACCAAAATGTTGACAACTACAAAAAGTTGTAGAGATCGGAGACTCAGAGTAGGCGGCGGTTTTTTCATGTCTGCAAACAAAAGGGACAGAGGCTGTTTAATAGAAAATGAGGAATTTGAAAAAAAAAAATTTTTTTTGAATTATTTTTGGATTTTCGATTTTTATTCCTTTCGGATTTTTGGATTTTTGAATTTAATGATTTTTAAAACGATTTTTTAAATTCTTGAAACTTTTTCGGAACATTTTTGAAACCTTCTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTCTAGAACTTTTTTGGCTTTTCAAATTTAAGAAATTGAATCTTTATAGCAAATTTTAAAGAAGTAACATAGTTTACATGAAATAAAAAGTAAAGGATAAAGAAAAAAGAAAGCGAATAGGGAAAATTGTGTTGGACTTCGGATCGTTGAAGACTCGAAGGATATCCACCTTCTGGGTACTTCAGTTTGATATTGTGATGTCCGTGCATCTTCCTTTTCCAAAACCAAACTAAGCGCTGAAAACGAATTTATTAAACAGAAATATTTCAAAATCTACTTACGTTTTTGCGGATTCCTTGCAAATTCCGTCGATGATCACTGTTCGGTTAGCTTTTGCGTTATCGAGATGAATTGGTCGAACCTCGAGACCTTTAACCGCGGCATTGAGGTCTGATAGAACGTATCTA</canonical>
            <polymorphic>TGGCCAGCAAGGAGCTTCTAGGAAGGCTAGCTTGGCTCCTAGAAAAACTAGAAAAGTGATTTTCGGCCCAAAAGCTAGATTTTGACTATTTTCAAAACATTTCCCAATGAAAACCTCTTTATAGCTCTATAGCCAAGACAGCCAAGATATGGCTTTTTGAAGTTTAAGTATACTTTTGTCCGCATCTCTATCTCTTAGGCAAGTGATTTTACCAAAATGTTGACAACTACAAAAAGTTGTAGAGATCGGAGACTCAGAGTAGGCGGCGGTTTTTTCATGTCTGCAAACAAAAGGGACAGAGGCTGTTTAATAGAAAATGAGGAATTTGAAAAAAAAAAATTTTTTTTGAATTATTTTTGGATTTTCGATTTTTATTCCTTTCGGATTTTTGGATTTTTGAATTTAATGATTTTTAAAACGATTTTTTAAATTCTTGAAACTTTTTCGGAACATTTTTGAAACCTTCTTGGATTTTTGAACATTTTAGAAATTTGGAATTKTTTATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTCTAGAACTTTTTTGGCTTTTCAAATTTAAGAAATTGAATCTTTATAGCAAATTTTAAAGAAGTAACATAGTTTACATGAAATAAAAAGTAAAGGATAAAGAAAAAAGAAAGCGAATAGGGAAAATTGTGTTGGACTTCGGATCGTTGAAGACTCGAAGGATATCCACCTTCTGGGTACTTCAGTTTGATATTGTGATGTCCGTGCATCTTCCTTTTCCAAAACCAAACTAAGCGCTGAAAACGAATTTATTAAACAGAAATATTTCAAAATCTACTTACGTTTTTGCGGATTCCTTGCAAATTCCGTCGATGATCACTGTTCGGTTAGCTTTTGCGTTATCGAGATGAATTGGTCGAACCTCGAGACCTTTAACCGCGGCATTGAGGTCTGATAGAACGTATCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTCGATTTTTATTCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCTAGTGTCTTTCAACTACTG</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GATTTTCGATTTTTATTCCTTTCGGATTTTTGGATTTTTGAATTTAATGATTTTTAAAACGATTTTTTAAATTCTTGAAACTTTTTCGGAACATTTTTGAAACCTTCTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>GATTTTCGATTTTTATTCCTTTCGGATTTTTGGATTTTTGAATTTAATGATTTTTAAAACGATTTTTTAAATTCTTGAAACTTTTTCGGAACATTTTTGAAACCTTCTTGGATTTTTGAACATTTTAGAAATTTGGAATTKTTTATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29851</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>144588</contig_pos>
        <strand></strand>
        <context>TGGAATTKTT[T/C]ATAGAATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTTGAAACCTTCTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTT</left_flank>
        <right_flank>ATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAATTTA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGCAAGGAGCTTCTAGGAAGGCTAGCTTGGCTCCTAGAAAAACTAGAAAAGTGATTTTCGGCCCAAAAGCTAGATTTTGACTATTTTCAAAACATTTCCCAATGAAAACCTCTTTATAGCTCTATAGCCAAGACAGCCAAGATATGGCTTTTTGAAGTTTAAGTATACTTTTGTCCGCATCTCTATCTCTTAGGCAAGTGATTTTACCAAAATGTTGACAACTACAAAAAGTTGTAGAGATCGGAGACTCAGAGTAGGCGGCGGTTTTTTCATGTCTGCAAACAAAAGGGACAGAGGCTGTTTAATAGAAAATGAGGAATTTGAAAAAAAAAAATTTTTTTTGAATTATTTTTGGATTTTCGATTTTTATTCCTTTCGGATTTTTGGATTTTTGAATTTAATGATTTTTAAAACGATTTTTTAAATTCTTGAAACTTTTTCGGAACATTTTTGAAACCTTCTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTCTAGAACTTTTTTGGCTTTTCAAATTTAAGAAATTGAATCTTTATAGCAAATTTTAAAGAAGTAACATAGTTTACATGAAATAAAAAGTAAAGGATAAAGAAAAAAGAAAGCGAATAGGGAAAATTGTGTTGGACTTCGGATCGTTGAAGACTCGAAGGATATCCACCTTCTGGGTACTTCAGTTTGATATTGTGATGTCCGTGCATCTTCCTTTTCCAAAACCAAACTAAGCGCTGAAAACGAATTTATTAAACAGAAATATTTCAAAATCTACTTACGTTTTTGCGGATTCCTTGCAAATTCCGTCGATGATCACTGTTCGGTTAGCTTTTGCGTTATCGAGATGAATTGGTCGAACCTCGAGACCTTTAACCGCGGCATTGAGGTCTGATAGAACGTATCTATCA</canonical>
            <polymorphic>CCAGCAAGGAGCTTCTAGGAAGGCTAGCTTGGCTCCTAGAAAAACTAGAAAAGTGATTTTCGGCCCAAAAGCTAGATTTTGACTATTTTCAAAACATTTCCCAATGAAAACCTCTTTATAGCTCTATAGCCAAGACAGCCAAGATATGGCTTTTTGAAGTTTAAGTATACTTTTGTCCGCATCTCTATCTCTTAGGCAAGTGATTTTACCAAAATGTTGACAACTACAAAAAGTTGTAGAGATCGGAGACTCAGAGTAGGCGGCGGTTTTTTCATGTCTGCAAACAAAAGGGACAGAGGCTGTTTAATAGAAAATGAGGAATTTGAAAAAAAAAAATTTTTTTTGAATTATTTTTGGATTTTCGATTTTTATTCCTTTCGGATTTTTGGATTTTTGAATTTAATGATTTTTAAAACGATTTTTTAAATTCTTGAAACTTTTTCGGAACATTTTTGAAACCTTCTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTYATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTCTAGAACTTTTTTGGCTTTTCAAATTTAAGAAATTGAATCTTTATAGCAAATTTTAAAGAAGTAACATAGTTTACATGAAATAAAAAGTAAAGGATAAAGAAAAAAGAAAGCGAATAGGGAAAATTGTGTTGGACTTCGGATCGTTGAAGACTCGAAGGATATCCACCTTCTGGGTACTTCAGTTTGATATTGTGATGTCCGTGCATCTTCCTTTTCCAAAACCAAACTAAGCGCTGAAAACGAATTTATTAAACAGAAATATTTCAAAATCTACTTACGTTTTTGCGGATTCCTTGCAAATTCCGTCGATGATCACTGTTCGGTTAGCTTTTGCGTTATCGAGATGAATTGGTCGAACCTCGAGACCTTTAACCGCGGCATTGAGGTCTGATAGAACGTATCTATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTCGATTTTTATTCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCTAGTGTCTTTCAACTACTG</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GATTTTCGATTTTTATTCCTTTCGGATTTTTGGATTTTTGAATTTAATGATTTTTAAAACGATTTTTTAAATTCTTGAAACTTTTTCGGAACATTTTTGAAACCTTCTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>GATTTTCGATTTTTATTCCTTTCGGATTTTTGGATTTTTGAATTTAATGATTTTTAAAACGATTTTTTAAATTCTTGAAACTTTTTCGGAACATTTTTGAAACCTTCTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTYATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29852</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>144608</contig_pos>
        <strand></strand>
        <context>TCAAAATTTC[A/G]RAGGTTKTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTC</left_flank>
        <right_flank>GAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGCTAGCTTGGCTCCTAGAAAAACTAGAAAAGTGATTTTCGGCCCAAAAGCTAGATTTTGACTATTTTCAAAACATTTCCCAATGAAAACCTCTTTATAGCTCTATAGCCAAGACAGCCAAGATATGGCTTTTTGAAGTTTAAGTATACTTTTGTCCGCATCTCTATCTCTTAGGCAAGTGATTTTACCAAAATGTTGACAACTACAAAAAGTTGTAGAGATCGGAGACTCAGAGTAGGCGGCGGTTTTTTCATGTCTGCAAACAAAAGGGACAGAGGCTGTTTAATAGAAAATGAGGAATTTGAAAAAAAAAAATTTTTTTTGAATTATTTTTGGATTTTCGATTTTTATTCCTTTCGGATTTTTGGATTTTTGAATTTAATGATTTTTAAAACGATTTTTTAAATTCTTGAAACTTTTTCGGAACATTTTTGAAACCTTCTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTCTAGAACTTTTTTGGCTTTTCAAATTTAAGAAATTGAATCTTTATAGCAAATTTTAAAGAAGTAACATAGTTTACATGAAATAAAAAGTAAAGGATAAAGAAAAAAGAAAGCGAATAGGGAAAATTGTGTTGGACTTCGGATCGTTGAAGACTCGAAGGATATCCACCTTCTGGGTACTTCAGTTTGATATTGTGATGTCCGTGCATCTTCCTTTTCCAAAACCAAACTAAGCGCTGAAAACGAATTTATTAAACAGAAATATTTCAAAATCTACTTACGTTTTTGCGGATTCCTTGCAAATTCCGTCGATGATCACTGTTCGGTTAGCTTTTGCGTTATCGAGATGAATTGGTCGAACCTCGAGACCTTTAACCGCGGCATTGAGGTCTGATAGAACGTATCTATCAAGACGCCCATTGTGGTAATC</canonical>
            <polymorphic>AGGCTAGCTTGGCTCCTAGAAAAACTAGAAAAGTGATTTTCGGCCCAAAAGCTAGATTTTGACTATTTTCAAAACATTTCCCAATGAAAACCTCTTTATAGCTCTATAGCCAAGACAGCCAAGATATGGCTTTTTGAAGTTTAAGTATACTTTTGTCCGCATCTCTATCTCTTAGGCAAGTGATTTTACCAAAATGTTGACAACTACAAAAAGTTGTAGAGATCGGAGACTCAGAGTAGGCGGCGGTTTTTTCATGTCTGCAAACAAAAGGGACAGAGGCTGTTTAATAGAAAATGAGGAATTTGAAAAAAAAAAATTTTTTTTGAATTATTTTTGGATTTTCGATTTTTATTCCTTTCGGATTTTTGGATTTTTGAATTTAATGATTTTTAAAACGATTTTTTAAATTCTTGAAACTTTTTCGGAACATTTTTGAAACCTTCTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCRGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTCTAGAACTTTTTTGGCTTTTCAAATTTAAGAAATTGAATCTTTATAGCAAATTTTAAAGAAGTAACATAGTTTACATGAAATAAAAAGTAAAGGATAAAGAAAAAAGAAAGCGAATAGGGAAAATTGTGTTGGACTTCGGATCGTTGAAGACTCGAAGGATATCCACCTTCTGGGTACTTCAGTTTGATATTGTGATGTCCGTGCATCTTCCTTTTCCAAAACCAAACTAAGCGCTGAAAACGAATTTATTAAACAGAAATATTTCAAAATCTACTTACGTTTTTGCGGATTCCTTGCAAATTCCGTCGATGATCACTGTTCGGTTAGCTTTTGCGTTATCGAGATGAATTGGTCGAACCTCGAGACCTTTAACCGCGGCATTGAGGTCTGATAGAACGTATCTATCAAGACGCCCATTGTGGTAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGGATTTTTGAACATTTTAGA</pcr_primer_p1>
		<pcr_primer_p2>TCCCTATTCGCTTTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTCTAGAACTTTTTTGGCTTTTCAAATTTAAGAAATTGAATCTTTATAGCAAATTTTAAAGAAGTAACATAGTTTACATGAAATAAAAAGTAAAGGATAAAGAAAAAAGAAAGCGAATAGGGA</canonical_amplicon>
		<polymorphic_amplicon>CTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCRGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTCTAGAACTTTTTTGGCTTTTCAAATTTAAGAAATTGAATCTTTATAGCAAATTTTAAAGAAGTAACATAGTTTACATGAAATAAAAAGTAAAGGATAAAGAAAAAAGAAAGCGAATAGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29853</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>144609</contig_pos>
        <strand></strand>
        <context>CAAAATTTCR[G/A]AGGTTKTGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCA</left_flank>
        <right_flank>AGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCTAGCTTGGCTCCTAGAAAAACTAGAAAAGTGATTTTCGGCCCAAAAGCTAGATTTTGACTATTTTCAAAACATTTCCCAATGAAAACCTCTTTATAGCTCTATAGCCAAGACAGCCAAGATATGGCTTTTTGAAGTTTAAGTATACTTTTGTCCGCATCTCTATCTCTTAGGCAAGTGATTTTACCAAAATGTTGACAACTACAAAAAGTTGTAGAGATCGGAGACTCAGAGTAGGCGGCGGTTTTTTCATGTCTGCAAACAAAAGGGACAGAGGCTGTTTAATAGAAAATGAGGAATTTGAAAAAAAAAAATTTTTTTTGAATTATTTTTGGATTTTCGATTTTTATTCCTTTCGGATTTTTGGATTTTTGAATTTAATGATTTTTAAAACGATTTTTTAAATTCTTGAAACTTTTTCGGAACATTTTTGAAACCTTCTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTCTAGAACTTTTTTGGCTTTTCAAATTTAAGAAATTGAATCTTTATAGCAAATTTTAAAGAAGTAACATAGTTTACATGAAATAAAAAGTAAAGGATAAAGAAAAAAGAAAGCGAATAGGGAAAATTGTGTTGGACTTCGGATCGTTGAAGACTCGAAGGATATCCACCTTCTGGGTACTTCAGTTTGATATTGTGATGTCCGTGCATCTTCCTTTTCCAAAACCAAACTAAGCGCTGAAAACGAATTTATTAAACAGAAATATTTCAAAATCTACTTACGTTTTTGCGGATTCCTTGCAAATTCCGTCGATGATCACTGTTCGGTTAGCTTTTGCGTTATCGAGATGAATTGGTCGAACCTCGAGACCTTTAACCGCGGCATTGAGGTCTGATAGAACGTATCTATCAAGACGCCCATTGTGGTAATCC</canonical>
            <polymorphic>GGCTAGCTTGGCTCCTAGAAAAACTAGAAAAGTGATTTTCGGCCCAAAAGCTAGATTTTGACTATTTTCAAAACATTTCCCAATGAAAACCTCTTTATAGCTCTATAGCCAAGACAGCCAAGATATGGCTTTTTGAAGTTTAAGTATACTTTTGTCCGCATCTCTATCTCTTAGGCAAGTGATTTTACCAAAATGTTGACAACTACAAAAAGTTGTAGAGATCGGAGACTCAGAGTAGGCGGCGGTTTTTTCATGTCTGCAAACAAAAGGGACAGAGGCTGTTTAATAGAAAATGAGGAATTTGAAAAAAAAAAATTTTTTTTGAATTATTTTTGGATTTTCGATTTTTATTCCTTTCGGATTTTTGGATTTTTGAATTTAATGATTTTTAAAACGATTTTTTAAATTCTTGAAACTTTTTCGGAACATTTTTGAAACCTTCTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCARAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTCTAGAACTTTTTTGGCTTTTCAAATTTAAGAAATTGAATCTTTATAGCAAATTTTAAAGAAGTAACATAGTTTACATGAAATAAAAAGTAAAGGATAAAGAAAAAAGAAAGCGAATAGGGAAAATTGTGTTGGACTTCGGATCGTTGAAGACTCGAAGGATATCCACCTTCTGGGTACTTCAGTTTGATATTGTGATGTCCGTGCATCTTCCTTTTCCAAAACCAAACTAAGCGCTGAAAACGAATTTATTAAACAGAAATATTTCAAAATCTACTTACGTTTTTGCGGATTCCTTGCAAATTCCGTCGATGATCACTGTTCGGTTAGCTTTTGCGTTATCGAGATGAATTGGTCGAACCTCGAGACCTTTAACCGCGGCATTGAGGTCTGATAGAACGTATCTATCAAGACGCCCATTGTGGTAATCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>251 224 211 127 76 64 39 8</canonical_bands>
                <polymorphic_bands>287 251 224 127 64 39 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTGGATTTTTGAACATTTTAGA</pcr_primer_p1>
		<pcr_primer_p2>TCCCTATTCGCTTTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTCTAGAACTTTTTTGGCTTTTCAAATTTAAGAAATTGAATCTTTATAGCAAATTTTAAAGAAGTAACATAGTTTACATGAAATAAAAAGTAAAGGATAAAGAAAAAAGAAAGCGAATAGGGA</canonical_amplicon>
		<polymorphic_amplicon>CTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCARAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTCTAGAACTTTTTTGGCTTTTCAAATTTAAGAAATTGAATCTTTATAGCAAATTTTAAAGAAGTAACATAGTTTACATGAAATAAAAAGTAAAGGATAAAGAAAAAAGAAAGCGAATAGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29854</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>144615</contig_pos>
        <strand></strand>
        <context>TTCRRAGGTT[G/T]TGGAATTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCAGAGGTT</left_flank>
        <right_flank>TGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTGGCTCCTAGAAAAACTAGAAAAGTGATTTTCGGCCCAAAAGCTAGATTTTGACTATTTTCAAAACATTTCCCAATGAAAACCTCTTTATAGCTCTATAGCCAAGACAGCCAAGATATGGCTTTTTGAAGTTTAAGTATACTTTTGTCCGCATCTCTATCTCTTAGGCAAGTGATTTTACCAAAATGTTGACAACTACAAAAAGTTGTAGAGATCGGAGACTCAGAGTAGGCGGCGGTTTTTTCATGTCTGCAAACAAAAGGGACAGAGGCTGTTTAATAGAAAATGAGGAATTTGAAAAAAAAAAATTTTTTTTGAATTATTTTTGGATTTTCGATTTTTATTCCTTTCGGATTTTTGGATTTTTGAATTTAATGATTTTTAAAACGATTTTTTAAATTCTTGAAACTTTTTCGGAACATTTTTGAAACCTTCTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTCTAGAACTTTTTTGGCTTTTCAAATTTAAGAAATTGAATCTTTATAGCAAATTTTAAAGAAGTAACATAGTTTACATGAAATAAAAAGTAAAGGATAAAGAAAAAAGAAAGCGAATAGGGAAAATTGTGTTGGACTTCGGATCGTTGAAGACTCGAAGGATATCCACCTTCTGGGTACTTCAGTTTGATATTGTGATGTCCGTGCATCTTCCTTTTCCAAAACCAAACTAAGCGCTGAAAACGAATTTATTAAACAGAAATATTTCAAAATCTACTTACGTTTTTGCGGATTCCTTGCAAATTCCGTCGATGATCACTGTTCGGTTAGCTTTTGCGTTATCGAGATGAATTGGTCGAACCTCGAGACCTTTAACCGCGGCATTGAGGTCTGATAGAACGTATCTATCAAGACGCCCATTGTGGTAATCCTCTTCA</canonical>
            <polymorphic>CTTGGCTCCTAGAAAAACTAGAAAAGTGATTTTCGGCCCAAAAGCTAGATTTTGACTATTTTCAAAACATTTCCCAATGAAAACCTCTTTATAGCTCTATAGCCAAGACAGCCAAGATATGGCTTTTTGAAGTTTAAGTATACTTTTGTCCGCATCTCTATCTCTTAGGCAAGTGATTTTACCAAAATGTTGACAACTACAAAAAGTTGTAGAGATCGGAGACTCAGAGTAGGCGGCGGTTTTTTCATGTCTGCAAACAAAAGGGACAGAGGCTGTTTAATAGAAAATGAGGAATTTGAAAAAAAAAAATTTTTTTTGAATTATTTTTGGATTTTCGATTTTTATTCCTTTCGGATTTTTGGATTTTTGAATTTAATGATTTTTAAAACGATTTTTTAAATTCTTGAAACTTTTTCGGAACATTTTTGAAACCTTCTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCAGAGGTTKTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTCTAGAACTTTTTTGGCTTTTCAAATTTAAGAAATTGAATCTTTATAGCAAATTTTAAAGAAGTAACATAGTTTACATGAAATAAAAAGTAAAGGATAAAGAAAAAAGAAAGCGAATAGGGAAAATTGTGTTGGACTTCGGATCGTTGAAGACTCGAAGGATATCCACCTTCTGGGTACTTCAGTTTGATATTGTGATGTCCGTGCATCTTCCTTTTCCAAAACCAAACTAAGCGCTGAAAACGAATTTATTAAACAGAAATATTTCAAAATCTACTTACGTTTTTGCGGATTCCTTGCAAATTCCGTCGATGATCACTGTTCGGTTAGCTTTTGCGTTATCGAGATGAATTGGTCGAACCTCGAGACCTTTAACCGCGGCATTGAGGTCTGATAGAACGTATCTATCAAGACGCCCATTGTGGTAATCCTCTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>327 147 138 112 106 54 37 29 28 13 9</canonical_bands>
                <polymorphic_bands>381 147 138 112 106 37 29 28 13 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTGGATTTTTGAACATTTTAGA</pcr_primer_p1>
		<pcr_primer_p2>TCCCTATTCGCTTTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTCTAGAACTTTTTTGGCTTTTCAAATTTAAGAAATTGAATCTTTATAGCAAATTTTAAAGAAGTAACATAGTTTACATGAAATAAAAAGTAAAGGATAAAGAAAAAAGAAAGCGAATAGGGA</canonical_amplicon>
		<polymorphic_amplicon>CTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCAGAGGTTKTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTCTAGAACTTTTTTGGCTTTTCAAATTTAAGAAATTGAATCTTTATAGCAAATTTTAAAGAAGTAACATAGTTTACATGAAATAAAAAGTAAAGGATAAAGAAAAAAGAAAGCGAATAGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29855</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>144630</contig_pos>
        <strand></strand>
        <context>ATTTTTTTTT[G/T]CAAATTTATG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAATTGTTTATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTT</left_flank>
        <right_flank>CAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTAGAAAAGTGATTTTCGGCCCAAAAGCTAGATTTTGACTATTTTCAAAACATTTCCCAATGAAAACCTCTTTATAGCTCTATAGCCAAGACAGCCAAGATATGGCTTTTTGAAGTTTAAGTATACTTTTGTCCGCATCTCTATCTCTTAGGCAAGTGATTTTACCAAAATGTTGACAACTACAAAAAGTTGTAGAGATCGGAGACTCAGAGTAGGCGGCGGTTTTTTCATGTCTGCAAACAAAAGGGACAGAGGCTGTTTAATAGAAAATGAGGAATTTGAAAAAAAAAAATTTTTTTTGAATTATTTTTGGATTTTCGATTTTTATTCCTTTCGGATTTTTGGATTTTTGAATTTAATGATTTTTAAAACGATTTTTTAAATTCTTGAAACTTTTTCGGAACATTTTTGAAACCTTCTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTCTAGAACTTTTTTGGCTTTTCAAATTTAAGAAATTGAATCTTTATAGCAAATTTTAAAGAAGTAACATAGTTTACATGAAATAAAAAGTAAAGGATAAAGAAAAAAGAAAGCGAATAGGGAAAATTGTGTTGGACTTCGGATCGTTGAAGACTCGAAGGATATCCACCTTCTGGGTACTTCAGTTTGATATTGTGATGTCCGTGCATCTTCCTTTTCCAAAACCAAACTAAGCGCTGAAAACGAATTTATTAAACAGAAATATTTCAAAATCTACTTACGTTTTTGCGGATTCCTTGCAAATTCCGTCGATGATCACTGTTCGGTTAGCTTTTGCGTTATCGAGATGAATTGGTCGAACCTCGAGACCTTTAACCGCGGCATTGAGGTCTGATAGAACGTATCTATCAAGACGCCCATTGTGGTAATCCTCTTCAAACTTTTTCCAGCTC</canonical>
            <polymorphic>AACTAGAAAAGTGATTTTCGGCCCAAAAGCTAGATTTTGACTATTTTCAAAACATTTCCCAATGAAAACCTCTTTATAGCTCTATAGCCAAGACAGCCAAGATATGGCTTTTTGAAGTTTAAGTATACTTTTGTCCGCATCTCTATCTCTTAGGCAAGTGATTTTACCAAAATGTTGACAACTACAAAAAGTTGTAGAGATCGGAGACTCAGAGTAGGCGGCGGTTTTTTCATGTCTGCAAACAAAAGGGACAGAGGCTGTTTAATAGAAAATGAGGAATTTGAAAAAAAAAAATTTTTTTTGAATTATTTTTGGATTTTCGATTTTTATTCCTTTCGGATTTTTGGATTTTTGAATTTAATGATTTTTAAAACGATTTTTTAAATTCTTGAAACTTTTTCGGAACATTTTTGAAACCTTCTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTKCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTCTAGAACTTTTTTGGCTTTTCAAATTTAAGAAATTGAATCTTTATAGCAAATTTTAAAGAAGTAACATAGTTTACATGAAATAAAAAGTAAAGGATAAAGAAAAAAGAAAGCGAATAGGGAAAATTGTGTTGGACTTCGGATCGTTGAAGACTCGAAGGATATCCACCTTCTGGGTACTTCAGTTTGATATTGTGATGTCCGTGCATCTTCCTTTTCCAAAACCAAACTAAGCGCTGAAAACGAATTTATTAAACAGAAATATTTCAAAATCTACTTACGTTTTTGCGGATTCCTTGCAAATTCCGTCGATGATCACTGTTCGGTTAGCTTTTGCGTTATCGAGATGAATTGGTCGAACCTCGAGACCTTTAACCGCGGCATTGAGGTCTGATAGAACGTATCTATCAAGACGCCCATTGTGGTAATCCTCTTCAAACTTTTTCCAGCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>262 254 238 153 93</canonical_bands>
                <polymorphic_bands>516 238 153 93</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTGGATTTTTGAACATTTTAGA</pcr_primer_p1>
		<pcr_primer_p2>TCCCTATTCGCTTTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTCTAGAACTTTTTTGGCTTTTCAAATTTAAGAAATTGAATCTTTATAGCAAATTTTAAAGAAGTAACATAGTTTACATGAAATAAAAAGTAAAGGATAAAGAAAAAAGAAAGCGAATAGGGA</canonical_amplicon>
		<polymorphic_amplicon>CTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTKCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTCTAGAACTTTTTTGGCTTTTCAAATTTAAGAAATTGAATCTTTATAGCAAATTTTAAAGAAGTAACATAGTTTACATGAAATAAAAAGTAAAGGATAAAGAAAAAAGAAAGCGAATAGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29856</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>144647</contig_pos>
        <strand></strand>
        <context>TATGTATTTT[T/C]TGAATTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTT</left_flank>
        <right_flank>TGAATTTTCAGTAGTTGAAAGACACTAGAATTTCTAGAACTTTTTTGGCT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGCCCAAAAGCTAGATTTTGACTATTTTCAAAACATTTCCCAATGAAAACCTCTTTATAGCTCTATAGCCAAGACAGCCAAGATATGGCTTTTTGAAGTTTAAGTATACTTTTGTCCGCATCTCTATCTCTTAGGCAAGTGATTTTACCAAAATGTTGACAACTACAAAAAGTTGTAGAGATCGGAGACTCAGAGTAGGCGGCGGTTTTTTCATGTCTGCAAACAAAAGGGACAGAGGCTGTTTAATAGAAAATGAGGAATTTGAAAAAAAAAAATTTTTTTTGAATTATTTTTGGATTTTCGATTTTTATTCCTTTCGGATTTTTGGATTTTTGAATTTAATGATTTTTAAAACGATTTTTTAAATTCTTGAAACTTTTTCGGAACATTTTTGAAACCTTCTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTCTAGAACTTTTTTGGCTTTTCAAATTTAAGAAATTGAATCTTTATAGCAAATTTTAAAGAAGTAACATAGTTTACATGAAATAAAAAGTAAAGGATAAAGAAAAAAGAAAGCGAATAGGGAAAATTGTGTTGGACTTCGGATCGTTGAAGACTCGAAGGATATCCACCTTCTGGGTACTTCAGTTTGATATTGTGATGTCCGTGCATCTTCCTTTTCCAAAACCAAACTAAGCGCTGAAAACGAATTTATTAAACAGAAATATTTCAAAATCTACTTACGTTTTTGCGGATTCCTTGCAAATTCCGTCGATGATCACTGTTCGGTTAGCTTTTGCGTTATCGAGATGAATTGGTCGAACCTCGAGACCTTTAACCGCGGCATTGAGGTCTGATAGAACGTATCTATCAAGACGCCCATTGTGGTAATCCTCTTCAAACTTTTTCCAGCTCTTCCGGATCGTAATCGC</canonical>
            <polymorphic>TCGGCCCAAAAGCTAGATTTTGACTATTTTCAAAACATTTCCCAATGAAAACCTCTTTATAGCTCTATAGCCAAGACAGCCAAGATATGGCTTTTTGAAGTTTAAGTATACTTTTGTCCGCATCTCTATCTCTTAGGCAAGTGATTTTACCAAAATGTTGACAACTACAAAAAGTTGTAGAGATCGGAGACTCAGAGTAGGCGGCGGTTTTTTCATGTCTGCAAACAAAAGGGACAGAGGCTGTTTAATAGAAAATGAGGAATTTGAAAAAAAAAAATTTTTTTTGAATTATTTTTGGATTTTCGATTTTTATTCCTTTCGGATTTTTGGATTTTTGAATTTAATGATTTTTAAAACGATTTTTTAAATTCTTGAAACTTTTTCGGAACATTTTTGAAACCTTCTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTYTGAATTTTCAGTAGTTGAAAGACACTAGAATTTCTAGAACTTTTTTGGCTTTTCAAATTTAAGAAATTGAATCTTTATAGCAAATTTTAAAGAAGTAACATAGTTTACATGAAATAAAAAGTAAAGGATAAAGAAAAAAGAAAGCGAATAGGGAAAATTGTGTTGGACTTCGGATCGTTGAAGACTCGAAGGATATCCACCTTCTGGGTACTTCAGTTTGATATTGTGATGTCCGTGCATCTTCCTTTTCCAAAACCAAACTAAGCGCTGAAAACGAATTTATTAAACAGAAATATTTCAAAATCTACTTACGTTTTTGCGGATTCCTTGCAAATTCCGTCGATGATCACTGTTCGGTTAGCTTTTGCGTTATCGAGATGAATTGGTCGAACCTCGAGACCTTTAACCGCGGCATTGAGGTCTGATAGAACGTATCTATCAAGACGCCCATTGTGGTAATCCTCTTCAAACTTTTTCCAGCTCTTCCGGATCGTAATCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGGATTTTTGAACATTTTAGA</pcr_primer_p1>
		<pcr_primer_p2>TCCCTATTCGCTTTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTTTGAATTTTCAGTAGTTGAAAGACACTAGAATTTCTAGAACTTTTTTGGCTTTTCAAATTTAAGAAATTGAATCTTTATAGCAAATTTTAAAGAAGTAACATAGTTTACATGAAATAAAAAGTAAAGGATAAAGAAAAAAGAAAGCGAATAGGGA</canonical_amplicon>
		<polymorphic_amplicon>CTTGGATTTTTGAACATTTTAGAAATTTGGAATTGTTTATAGAATTTTCAAAATTTCAGAGGTTGTGGAATTTTTTTTTGCAAATTTATGTATTTTYTGAATTTTCAGTAGTTGAAAGACACTAGAATTTCTAGAACTTTTTTGGCTTTTCAAATTTAAGAAATTGAATCTTTATAGCAAATTTTAAAGAAGTAACATAGTTTACATGAAATAAAAAGTAAAGGATAAAGAAAAAAGAAAGCGAATAGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29857</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>155052</contig_pos>
        <strand></strand>
        <context>gttaaattcg[G/A]atatattcga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATAGAAAATTGTAGAACTAGAATAAATCTTTAAAATGATGTTAAATTCG</left_flank>
        <right_flank>ATATATTCGAATACCGAGTTTTCGATCCATAACGAGCGCTATCCCGATTT</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATTGATGGATAGGTGGTACCCCACTTATCCAAGAGGGCTTCCGGATTCGACCTTCCAACCCCATATTCCGTATATAGTGTAGCATTAGTGTGACACCTGGTTATGAACATAGGTTTCAATCTTTTTTTTTTTGGGTGGTTTAATTGGCGTATAATATATATCTAGTAGAATATACCTAGCAGATGGGAATAAGTGCTCAATGATGTTTCAGGCTACCATACTTAGCTTTCGCGTTTTTTGGAAAAGATATCAAAAAGTTGTCGACTATCAAAATGTAGCTCATAAAATGTTACACGTTTGGCTAGTTAACAAAATTAAGATAACTTTCATGGTTTTTGAGTTATGCGCCTTTAAACTTACCGCGCGCTAACAGGGGTGGAAGTGACTCATAGAAGTTCGTAAAATGGAGCATAACTCGGTTCAAAATTGGTATTTTTGCGCAAATCAAATAGAAAATTGTAGAACTAGAATAAATCTTTAAAATGATGTTAAATTCGGATATATTCGAATACCGAGTTTTCGATCCATAACGAGCGCTATCCCGATTTTGCAGGCCCCTTTGTTTCTCAGCATCTGGTGTAAAACTCTGTCGTTCAAACTAGGTGAGTTTTATACGATTTTGTAGATTTTTCAAAGTTCGACTAGGTTCTTTTTAATTCACACAAAAATTTACACTTTGAGTCAAGTTAGGCGCCGAGTTGTGCGCTCTAGTAGATTACACCTAGTCTTCAGATTTTGCGACCTCCGATTTCCAAGCCTCTGGTGCAAAGCTTTGACAATAGAATATAGTCGAATTTGTTATTGTTTTGTAGATCTTTTTAAGTTCTGCAAGGTTCTTTTTCATTCAAATTTAAATTCCAATTTTGAACCGAGTTATGCACTAACCTGTGATCCATAGTAGGCGCCACCAGGGCCGACAGATGTTTCGAAGCCTCTGGTGCATAAGTCTGTCCGTCATATATAGTCAAACTTATTATCATTTTGTAGCTCTTTTTCAG</canonical>
            <polymorphic>GGATTGATGGATAGGTGGTACCCCACTTATCCAAGAGGGCTTCCGGATTCGACCTTCCAACCCCATATTCCGTATATAGTGTAGCATTAGTGTGACACCTGGTTATGAACATAGGTTTCAATCTTTTTTTTTTTGGGTGGTTTAATTGGCGTATAATATATATCTAGTAGAATATACCTAGCAGATGGGAATAAGTGCTCAATGATGTTTCAGGCTACCATACTTAGCTTTCGCGTTTTTTGGAAAAGATATCAAAAAGTTGTCGACTATCAAAATGTAGCTCATAAAATGTTACACGTTTGGCTAGTTAACAAAATTAAGATAACTTTCATGGTTTTTGAGTTATGCGCCTTTAAACTTACCGCGCGCTAACAGGGGTGGAAGTGACTCATAGAAGTTCGTAAAATGGAGCATAACTCGGTTCAAAATTGGTATTTTTGCGCAAATCAAATAGAAAATTGTAGAACTAGAATAAATCTTTAAAATGATGTTAAATTCGRATATATTCGAATACCGAGTTTTCGATCCATAACGAGCGCTATCCCGATTTTGCAGGCCCCTTTGTTTCTCAGCATCTGGTGTAAAACTCTGTCGTTCAAACTAGGTGAGTTTTATACGATTTTGTAGATTTTTCAAAGTTCGACTAGGTTCTTTTTAATTCACACAAAAATTTACACTTTGAGTCAAGTTAGGCGCCGAGTTGTGCGCTCTAGTAGATTACACCTAGTCTTCAGATTTTGCGACCTCCGATTTCCAAGCCTCTGGTGCAAAGCTTTGACAATAGAATATAGTCGAATTTGTTATTGTTTTGTAGATCTTTTTAAGTTCTGCAAGGTTCTTTTTCATTCAAATTTAAATTCCAATTTTGAACCGAGTTATGCACTAACCTGTGATCCATAGTAGGCGCCACCAGGGCCGACAGATGTTTCGAAGCCTCTGGTGCATAAGTCTGTCCGTCATATATAGTCAAACTTATTATCATTTTGTAGCTCTTTTTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>499 252 234 15</canonical_bands>
                <polymorphic_bands>733 252 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGGCTACCATACTTAGCTTTC</pcr_primer_p1>
		<pcr_primer_p2>CAAAATCTGAAGACTAGGTGTAATC</pcr_primer_p2>
		<pcr_amplicon_size>530</pcr_amplicon_size>
		<canonical_amplicon>CAGGCTACCATACTTAGCTTTCGCGTTTTTTGGAAAAGATATCAAAAAGTTGTCGACTATCAAAATGTAGCTCATAAAATGTTACACGTTTGGCTAGTTAACAAAATTAAGATAACTTTCATGGTTTTTGAGTTATGCGCCTTTAAACTTACCGCGCGCTAACAGGGGTGGAAGTGACTCATAGAAGTTCGTAAAATGGAGCATAACTCGGTTCAAAATTGGTATTTTTGCGCAAATCAAATAGAAAATTGTAGAACTAGAATAAATCTTTAAAATGATGTTAAATTCGGATATATTCGAATACCGAGTTTTCGATCCATAACGAGCGCTATCCCGATTTTGCAGGCCCCTTTGTTTCTCAGCATCTGGTGTAAAACTCTGTCGTTCAAACTAGGTGAGTTTTATACGATTTTGTAGATTTTTCAAAGTTCGACTAGGTTCTTTTTAATTCACACAAAAATTTACACTTTGAGTCAAGTTAGGCGCCGAGTTGTGCGCTCTAGTAGATTACACCTAGTCTTCAGATTTTG</canonical_amplicon>
		<polymorphic_amplicon>CAGGCTACCATACTTAGCTTTCGCGTTTTTTGGAAAAGATATCAAAAAGTTGTCGACTATCAAAATGTAGCTCATAAAATGTTACACGTTTGGCTAGTTAACAAAATTAAGATAACTTTCATGGTTTTTGAGTTATGCGCCTTTAAACTTACCGCGCGCTAACAGGGGTGGAAGTGACTCATAGAAGTTCGTAAAATGGAGCATAACTCGGTTCAAAATTGGTATTTTTGCGCAAATCAAATAGAAAATTGTAGAACTAGAATAAATCTTTAAAATGATGTTAAATTCGRATATATTCGAATACCGAGTTTTCGATCCATAACGAGCGCTATCCCGATTTTGCAGGCCCCTTTGTTTCTCAGCATCTGGTGTAAAACTCTGTCGTTCAAACTAGGTGAGTTTTATACGATTTTGTAGATTTTTCAAAGTTCGACTAGGTTCTTTTTAATTCACACAAAAATTTACACTTTGAGTCAAGTTAGGCGCCGAGTTGTGCGCTCTAGTAGATTACACCTAGTCTTCAGATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29858</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>155419</contig_pos>
        <strand></strand>
        <context>attccaattt[T/G]gaaccgagtt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CTTTTTAAGTTCTGCAAGGTTCTTTTTCATTCAAATTTAAATTCCAATTT</left_flank>
        <right_flank>GAACCGAGTTATGCACTAACCTGTGATCCATAGTAGGCGCCACCAGGGCC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTAACAGGGGTGGAAGTGACTCATAGAAGTTCGTAAAATGGAGCATAACTCGGTTCAAAATTGGTATTTTTGCGCAAATCAAATAGAAAATTGTAGAACTAGAATAAATCTTTAAAATGATGTTAAATTCGGATATATTCGAATACCGAGTTTTCGATCCATAACGAGCGCTATCCCGATTTTGCAGGCCCCTTTGTTTCTCAGCATCTGGTGTAAAACTCTGTCGTTCAAACTAGGTGAGTTTTATACGATTTTGTAGATTTTTCAAAGTTCGACTAGGTTCTTTTTAATTCACACAAAAATTTACACTTTGAGTCAAGTTAGGCGCCGAGTTGTGCGCTCTAGTAGATTACACCTAGTCTTCAGATTTTGCGACCTCCGATTTCCAAGCCTCTGGTGCAAAGCTTTGACAATAGAATATAGTCGAATTTGTTATTGTTTTGTAGATCTTTTTAAGTTCTGCAAGGTTCTTTTTCATTCAAATTTAAATTCCAATTTTGAACCGAGTTATGCACTAACCTGTGATCCATAGTAGGCGCCACCAGGGCCGACAGATGTTTCGAAGCCTCTGGTGCATAAGTCTGTCCGTCATATATAGTCAAACTTATTATCATTTTGTAGCTCTTTTTCAGTTCTACAGGGTCCTATTTAGTTTTTTTTGCTCAAACAAAAATTCTGACATTGAACAGAGTTATGCGCCGAGTTATGCGCCATAGTAAGCGACATCAATGTCGACTTTGCGACTCCCTCCATTTCACAGCTTCTGGTGCGAAACTTGGCAATTTAATATAGTCGAGTTTATTATCATTTTGTACCTCTTCTTAAGCTCTACAAGACCCTTTATCACTCAAATCAAAGTTCTCATTTTAAACCGAGTTATGCACCTTAGTATGCGTCACCCCTTAGTAGGCGGCACCCCAGCGCTCCGATTTGTGGCTTCTCTGTTTTCCATCCTCTAGCGCAAATCTTTGGCAATCAAATACAGTTGAATGTATTATC</canonical>
            <polymorphic>GCTAACAGGGGTGGAAGTGACTCATAGAAGTTCGTAAAATGGAGCATAACTCGGTTCAAAATTGGTATTTTTGCGCAAATCAAATAGAAAATTGTAGAACTAGAATAAATCTTTAAAATGATGTTAAATTCGGATATATTCGAATACCGAGTTTTCGATCCATAACGAGCGCTATCCCGATTTTGCAGGCCCCTTTGTTTCTCAGCATCTGGTGTAAAACTCTGTCGTTCAAACTAGGTGAGTTTTATACGATTTTGTAGATTTTTCAAAGTTCGACTAGGTTCTTTTTAATTCACACAAAAATTTACACTTTGAGTCAAGTTAGGCGCCGAGTTGTGCGCTCTAGTAGATTACACCTAGTCTTCAGATTTTGCGACCTCCGATTTCCAAGCCTCTGGTGCAAAGCTTTGACAATAGAATATAGTCGAATTTGTTATTGTTTTGTAGATCTTTTTAAGTTCTGCAAGGTTCTTTTTCATTCAAATTTAAATTCCAATTTKGAACCGAGTTATGCACTAACCTGTGATCCATAGTAGGCGCCACCAGGGCCGACAGATGTTTCGAAGCCTCTGGTGCATAAGTCTGTCCGTCATATATAGTCAAACTTATTATCATTTTGTAGCTCTTTTTCAGTTCTACAGGGTCCTATTTAGTTTTTTTTGCTCAAACAAAAATTCTGACATTGAACAGAGTTATGCGCCGAGTTATGCGCCATAGTAAGCGACATCAATGTCGACTTTGCGACTCCCTCCATTTCACAGCTTCTGGTGCGAAACTTGGCAATTTAATATAGTCGAGTTTATTATCATTTTGTACCTCTTCTTAAGCTCTACAAGACCCTTTATCACTCAAATCAAAGTTCTCATTTTAAACCGAGTTATGCACCTTAGTATGCGTCACCCCTTAGTAGGCGGCACCCCAGCGCTCCGATTTGTGGCTTCTCTGTTTTCCATCCTCTAGCGCAAATCTTTGGCAATCAAATACAGTTGAATGTATTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCGCTCTAGTAGATTACACCT</pcr_primer_p1>
		<pcr_primer_p2>ACAGACTTATGCACCAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGCGCTCTAGTAGATTACACCTAGTCTTCAGATTTTGCGACCTCCGATTTCCAAGCCTCTGGTGCAAAGCTTTGACAATAGAATATAGTCGAATTTGTTATTGTTTTGTAGATCTTTTTAAGTTCTGCAAGGTTCTTTTTCATTCAAATTTAAATTCCAATTTTGAACCGAGTTATGCACTAACCTGTGATCCATAGTAGGCGCCACCAGGGCCGACAGATGTTTCGAAGCCTCTGGTGCATAAGTCTGT</canonical_amplicon>
		<polymorphic_amplicon>TGCGCTCTAGTAGATTACACCTAGTCTTCAGATTTTGCGACCTCCGATTTCCAAGCCTCTGGTGCAAAGCTTTGACAATAGAATATAGTCGAATTTGTTATTGTTTTGTAGATCTTTTTAAGTTCTGCAAGGTTCTTTTTCATTCAAATTTAAATTCCAATTTKGAACCGAGTTATGCACTAACCTGTGATCCATAGTAGGCGCCACCAGGGCCGACAGATGTTTCGAAGCCTCTGGTGCATAAGTCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29859</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>220803</contig_pos>
        <strand>+</strand>
        <context>tcggaatttc[C/T]aaatttctga</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGAACTTCTATTTTTCAAAATTTTCGGAATTCTGGAATTTCGGAATTTC</left_flank>
        <right_flank>AAATTTCTGAAGTTTTGTAGTTTTTCGATTTTTTTCCAGATTCTCCTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAGAGCTGAAAACATTTTTCCAAAAAACCAATAAATATGCCGCCTACCTTCATGACTGCCCAACAAAGGCGCCGCCATTGGAGTCTGAAATTGTCGATTTTATCGATTTTCAGTCGAAAAATAAGTCGGAAATTGTGTAGAACAGAGTTGTCGAAAATAATGCATGACTTGCAGCAGAGATTGCAAGCGCGCTCTGTTGGACAAGAAAAAGCGAGGGAGATTTGAATTTTGAAGGCTCGGAGGGGAAAAGGAGACTTTTGGAGTTTGGACGGGTTTTGAACTAGATTTTCGGGTAGAAAAAGTGAAAAATTGGGAAAAAGAAAAAAACAAGAAAATTACACAAAAAATAAGGAAAACGTTGTTTTTGAAAAACTGGAAAATCTATGAGAACTTGAAATTCTTACGAAACAAAAAACAAATTTTTAGAATTTCAAAACTTCTGAATTTCTGAACTTCTATTTTTCAAAATTTTCGGAATTCTGGAATTTCGGAATTTCTAAATTTCTGAAGTTTTGTAGTTTTTCGATTTTTTTCCAGATTCTCCTTTTTTTTTTCATTGAAAAACAACCCTTTTCTGACCATTTTTAATATATATTTTTAATATAATTTATGATATAAATAAGGTTTTTCTGTTTTTGTTCAAATTCGAATATTCCTATTTTCCAGATTTTCCTCCTCCTCCCTCTCCGATTTCTTTCCGCGCGCCACACATTCATATCCGCCTTCCGCCCCTTTGTAAAGAGTTGCACGCGTGGCCGACTAGCTAACGAGCCTGCTTTTGAACCCCACCGGTGGAGAGCCTCCCGGGTTCGACTCCCCGCCTATTTCCTTTTTGTTTTGTTTTTCTGCGCTTGTAGTATTGTAAAATTGCTTTCTTTTGATCATCGGTCGCTCAAAAAAAGTGACCGCCCGTCTTCCTCTTCTTCCCGCACTCACTCAATAAATACCGCCCATCTTTTCTCTGTCACTCATCACACTATTTCGTTGTTGTTTGTGGC</canonical>
            <polymorphic>TCCAGAGCTGAAAACATTTTTCCAAAAAACCAATAAATATGCCGCCTACCTTCATGACTGCCCAACAAAGGCGCCGCCATTGGAGTCTGAAATTGTCGATTTTATCGATTTTCAGTCGAAAAATAAGTCGGAAATTGTGTAGAACAGAGTTGTCGAAAATAATGCATGACTTGCAGCAGAGATTGCAAGCGCGCTCTGTTGGACAAGAAAAAGCGAGGGAGATTTGAATTTTGAAGGCTCGGAGGGGAAAAGGAGACTTTTGGAGTTTGGACGGGTTTTGAACTAGATTTTCGGGTAGAAAAAGTGAAAAATTGGGAAAAAGAAAAAAACAAGAAAATTACACAAAAAATAAGGAAAACGTTGTTTTTGAAAAACTGGAAAATCTATGAGAACTTGAAATTCTTACGAAACAAAAAACAAATTTTTAGAATTTCAAAACTTCTGAATTTCTGAACTTCTATTTTTCAAAATTTTCGGAATTCTGGAATTTCGGAATTTCYAAATTTCTGAAGTTTTGTAGTTTTTCGATTTTTTTCCAGATTCTCCTTTTTTTTTTCATTGAAAAACAACCCTTTTCTGACCATTTTTAATATATATTTTTAATATAATTTATGATATAAATAAGGTTTTTCTGTTTTTGTTCAAATTCGAATATTCCTATTTTCCAGATTTTCCTCCTCCTCCCTCTCCGATTTCTTTCCGCGCGCCACACATTCATATCCGCCTTCCGCCCCTTTGTAAAGAGTTGCACGCGTGGCCGACTAGCTAACGAGCCTGCTTTTGAACCCCACCGGTGGAGAGCCTCCCGGGTTCGACTCCCCGCCTATTTCCTTTTTGTTTTGTTTTTCTGCGCTTGTAGTATTGTAAAATTGCTTTCTTTTGATCATCGGTCGCTCAAAAAAAGTGACCGCCCGTCTTCCTCTTCTTCCCGCACTCACTCAATAAATACCGCCCATCTTTTCTCTGTCACTCATCACACTATTTCGTTGTTGTTTGTGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAAAACTGGAAAATCTATG</pcr_primer_p1>
		<pcr_primer_p2>GTCAGAAAAGGGTTGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>216</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAAAACTGGAAAATCTATGAGAACTTGAAATTCTTACGAAACAAAAAACAAATTTTTAGAATTTCAAAACTTCTGAATTTCTGAACTTCTATTTTTCAAAATTTTCGGAATTCTGGAATTTCGGAATTTCTAAATTTCTGAAGTTTTGTAGTTTTTCGATTTTTTTCCAGATTCTCCTTTTTTTTTTCATTGAAAAACAACCCTTTTCTGAC</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAAAACTGGAAAATCTATGAGAACTTGAAATTCTTACGAAACAAAAAACAAATTTTTAGAATTTCAAAACTTCTGAATTTCTGAACTTCTATTTTTCAAAATTTTCGGAATTCTGGAATTTCGGAATTTCYAAATTTCTGAAGTTTTGTAGTTTTTCGATTTTTTTCCAGATTCTCCTTTTTTTTTTCATTGAAAAACAACCCTTTTCTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29860</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>220859</contig_pos>
        <strand>+</strand>
        <context>CTTTTTTTTT[A/G]CATTGAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGAAGTTTTGTAGTTTTTCGATTTTTTTCCAGATTCTCCTTTTTTTTT</left_flank>
        <right_flank>CATTGAAAAACAACCCTTTTCTGACCATTTTTAATATATATTTTTAATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGCCCAACAAAGGCGCCGCCATTGGAGTCTGAAATTGTCGATTTTATCGATTTTCAGTCGAAAAATAAGTCGGAAATTGTGTAGAACAGAGTTGTCGAAAATAATGCATGACTTGCAGCAGAGATTGCAAGCGCGCTCTGTTGGACAAGAAAAAGCGAGGGAGATTTGAATTTTGAAGGCTCGGAGGGGAAAAGGAGACTTTTGGAGTTTGGACGGGTTTTGAACTAGATTTTCGGGTAGAAAAAGTGAAAAATTGGGAAAAAGAAAAAAACAAGAAAATTACACAAAAAATAAGGAAAACGTTGTTTTTGAAAAACTGGAAAATCTATGAGAACTTGAAATTCTTACGAAACAAAAAACAAATTTTTAGAATTTCAAAACTTCTGAATTTCTGAACTTCTATTTTTCAAAATTTTCGGAATTCTGGAATTTCGGAATTTCTAAATTTCTGAAGTTTTGTAGTTTTTCGATTTTTTTCCAGATTCTCCTTTTTTTTTTCATTGAAAAACAACCCTTTTCTGACCATTTTTAATATATATTTTTAATATAATTTATGATATAAATAAGGTTTTTCTGTTTTTGTTCAAATTCGAATATTCCTATTTTCCAGATTTTCCTCCTCCTCCCTCTCCGATTTCTTTCCGCGCGCCACACATTCATATCCGCCTTCCGCCCCTTTGTAAAGAGTTGCACGCGTGGCCGACTAGCTAACGAGCCTGCTTTTGAACCCCACCGGTGGAGAGCCTCCCGGGTTCGACTCCCCGCCTATTTCCTTTTTGTTTTGTTTTTCTGCGCTTGTAGTATTGTAAAATTGCTTTCTTTTGATCATCGGTCGCTCAAAAAAAGTGACCGCCCGTCTTCCTCTTCTTCCCGCACTCACTCAATAAATACCGCCCATCTTTTCTCTGTCACTCATCACACTATTTCGTTGTTGTTTGTGGCAGAGGGGAAAAAAAGAAGATAGAGTGAGGAGAATGTGTGTCGCCATCGCTATTCAG</canonical>
            <polymorphic>ACTGCCCAACAAAGGCGCCGCCATTGGAGTCTGAAATTGTCGATTTTATCGATTTTCAGTCGAAAAATAAGTCGGAAATTGTGTAGAACAGAGTTGTCGAAAATAATGCATGACTTGCAGCAGAGATTGCAAGCGCGCTCTGTTGGACAAGAAAAAGCGAGGGAGATTTGAATTTTGAAGGCTCGGAGGGGAAAAGGAGACTTTTGGAGTTTGGACGGGTTTTGAACTAGATTTTCGGGTAGAAAAAGTGAAAAATTGGGAAAAAGAAAAAAACAAGAAAATTACACAAAAAATAAGGAAAACGTTGTTTTTGAAAAACTGGAAAATCTATGAGAACTTGAAATTCTTACGAAACAAAAAACAAATTTTTAGAATTTCAAAACTTCTGAATTTCTGAACTTCTATTTTTCAAAATTTTCGGAATTCTGGAATTTCGGAATTTCTAAATTTCTGAAGTTTTGTAGTTTTTCGATTTTTTTCCAGATTCTCCTTTTTTTTTRCATTGAAAAACAACCCTTTTCTGACCATTTTTAATATATATTTTTAATATAATTTATGATATAAATAAGGTTTTTCTGTTTTTGTTCAAATTCGAATATTCCTATTTTCCAGATTTTCCTCCTCCTCCCTCTCCGATTTCTTTCCGCGCGCCACACATTCATATCCGCCTTCCGCCCCTTTGTAAAGAGTTGCACGCGTGGCCGACTAGCTAACGAGCCTGCTTTTGAACCCCACCGGTGGAGAGCCTCCCGGGTTCGACTCCCCGCCTATTTCCTTTTTGTTTTGTTTTTCTGCGCTTGTAGTATTGTAAAATTGCTTTCTTTTGATCATCGGTCGCTCAAAAAAAGTGACCGCCCGTCTTCCTCTTCTTCCCGCACTCACTCAATAAATACCGCCCATCTTTTCTCTGTCACTCATCACACTATTTCGTTGTTGTTTGTGGCAGAGGGGAAAAAAAGAAGATAGAGTGAGGAGAATGTGTGTCGCCATCGCTATTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAATCTATGAGAACTTGAAA</pcr_primer_p1>
		<pcr_primer_p2>GAATTTGAACAAAAACAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>GGAAAATCTATGAGAACTTGAAATTCTTACGAAACAAAAAACAAATTTTTAGAATTTCAAAACTTCTGAATTTCTGAACTTCTATTTTTCAAAATTTTCGGAATTCTGGAATTTCGGAATTTCTAAATTTCTGAAGTTTTGTAGTTTTTCGATTTTTTTCCAGATTCTCCTTTTTTTTTTCATTGAAAAACAACCCTTTTCTGACCATTTTTAATATATATTTTTAATATAATTTATGATATAAATAAGGTTTTTCTGTTTTTGTTCAAATTC</canonical_amplicon>
		<polymorphic_amplicon>GGAAAATCTATGAGAACTTGAAATTCTTACGAAACAAAAAACAAATTTTTAGAATTTCAAAACTTCTGAATTTCTGAACTTCTATTTTTCAAAATTTTCGGAATTCTGGAATTTCGGAATTTCTAAATTTCTGAAGTTTTGTAGTTTTTCGATTTTTTTCCAGATTCTCCTTTTTTTTTRCATTGAAAAACAACCCTTTTCTGACCATTTTTAATATATATTTTTAATATAATTTATGATATAAATAAGGTTTTTCTGTTTTTGTTCAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29861</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>220956</contig_pos>
        <strand>+</strand>
        <context>CAAATTCGAA[A/T]ATTCCTATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATATAATTTATGATATAAATAAGGTTTTTCTGTTTTTGTTCAAATTCGAA</left_flank>
        <right_flank>ATTCCTATTTTCCAGATTTTCCTCCTCCTCCCTCTCCGATTTCTTTCCGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAAAATAATGCATGACTTGCAGCAGAGATTGCAAGCGCGCTCTGTTGGACAAGAAAAAGCGAGGGAGATTTGAATTTTGAAGGCTCGGAGGGGAAAAGGAGACTTTTGGAGTTTGGACGGGTTTTGAACTAGATTTTCGGGTAGAAAAAGTGAAAAATTGGGAAAAAGAAAAAAACAAGAAAATTACACAAAAAATAAGGAAAACGTTGTTTTTGAAAAACTGGAAAATCTATGAGAACTTGAAATTCTTACGAAACAAAAAACAAATTTTTAGAATTTCAAAACTTCTGAATTTCTGAACTTCTATTTTTCAAAATTTTCGGAATTCTGGAATTTCGGAATTTCTAAATTTCTGAAGTTTTGTAGTTTTTCGATTTTTTTCCAGATTCTCCTTTTTTTTTTCATTGAAAAACAACCCTTTTCTGACCATTTTTAATATATATTTTTAATATAATTTATGATATAAATAAGGTTTTTCTGTTTTTGTTCAAATTCGAATATTCCTATTTTCCAGATTTTCCTCCTCCTCCCTCTCCGATTTCTTTCCGCGCGCCACACATTCATATCCGCCTTCCGCCCCTTTGTAAAGAGTTGCACGCGTGGCCGACTAGCTAACGAGCCTGCTTTTGAACCCCACCGGTGGAGAGCCTCCCGGGTTCGACTCCCCGCCTATTTCCTTTTTGTTTTGTTTTTCTGCGCTTGTAGTATTGTAAAATTGCTTTCTTTTGATCATCGGTCGCTCAAAAAAAGTGACCGCCCGTCTTCCTCTTCTTCCCGCACTCACTCAATAAATACCGCCCATCTTTTCTCTGTCACTCATCACACTATTTCGTTGTTGTTTGTGGCAGAGGGGAAAAAAAGAAGATAGAGTGAGGAGAATGTGTGTCGCCATCGCTATTCAGTTTCTATGAAACCTTGATAGGGTTTTCAGGACGTTTTTTGAAACAAAAACTTTTTTTGAAAAATTGGACCTTCTAGAACTTTTTTCCCCAATTGAAA</canonical>
            <polymorphic>CGAAAATAATGCATGACTTGCAGCAGAGATTGCAAGCGCGCTCTGTTGGACAAGAAAAAGCGAGGGAGATTTGAATTTTGAAGGCTCGGAGGGGAAAAGGAGACTTTTGGAGTTTGGACGGGTTTTGAACTAGATTTTCGGGTAGAAAAAGTGAAAAATTGGGAAAAAGAAAAAAACAAGAAAATTACACAAAAAATAAGGAAAACGTTGTTTTTGAAAAACTGGAAAATCTATGAGAACTTGAAATTCTTACGAAACAAAAAACAAATTTTTAGAATTTCAAAACTTCTGAATTTCTGAACTTCTATTTTTCAAAATTTTCGGAATTCTGGAATTTCGGAATTTCTAAATTTCTGAAGTTTTGTAGTTTTTCGATTTTTTTCCAGATTCTCCTTTTTTTTTTCATTGAAAAACAACCCTTTTCTGACCATTTTTAATATATATTTTTAATATAATTTATGATATAAATAAGGTTTTTCTGTTTTTGTTCAAATTCGAAWATTCCTATTTTCCAGATTTTCCTCCTCCTCCCTCTCCGATTTCTTTCCGCGCGCCACACATTCATATCCGCCTTCCGCCCCTTTGTAAAGAGTTGCACGCGTGGCCGACTAGCTAACGAGCCTGCTTTTGAACCCCACCGGTGGAGAGCCTCCCGGGTTCGACTCCCCGCCTATTTCCTTTTTGTTTTGTTTTTCTGCGCTTGTAGTATTGTAAAATTGCTTTCTTTTGATCATCGGTCGCTCAAAAAAAGTGACCGCCCGTCTTCCTCTTCTTCCCGCACTCACTCAATAAATACCGCCCATCTTTTCTCTGTCACTCATCACACTATTTCGTTGTTGTTTGTGGCAGAGGGGAAAAAAAGAAGATAGAGTGAGGAGAATGTGTGTCGCCATCGCTATTCAGTTTCTATGAAACCTTGATAGGGTTTTCAGGACGTTTTTTGAAACAAAAACTTTTTTTGAAAAATTGGACCTTCTAGAACTTTTTTCCCCAATTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACAACCCTTTTCTGAC</pcr_primer_p1>
		<pcr_primer_p2>AAACAAAACAAAAAGGAAATAGG</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACAACCCTTTTCTGACCATTTTTAATATATATTTTTAATATAATTTATGATATAAATAAGGTTTTTCTGTTTTTGTTCAAATTCGAATATTCCTATTTTCCAGATTTTCCTCCTCCTCCCTCTCCGATTTCTTTCCGCGCGCCACACATTCATATCCGCCTTCCGCCCCTTTGTAAAGAGTTGCACGCGTGGCCGACTAGCTAACGAGCCTGCTTTTGAACCCCACCGGTGGAGAGCCTCCCGGGTTCGACTCCCCGCCTATTTCCTTTTTGTTTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACAACCCTTTTCTGACCATTTTTAATATATATTTTTAATATAATTTATGATATAAATAAGGTTTTTCTGTTTTTGTTCAAATTCGAAWATTCCTATTTTCCAGATTTTCCTCCTCCTCCCTCTCCGATTTCTTTCCGCGCGCCACACATTCATATCCGCCTTCCGCCCCTTTGTAAAGAGTTGCACGCGTGGCCGACTAGCTAACGAGCCTGCTTTTGAACCCCACCGGTGGAGAGCCTCCCGGGTTCGACTCCCCGCCTATTTCCTTTTTGTTTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29862</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>220980</contig_pos>
        <strand>+</strand>
        <context>AGATTTTCCT[C/T]CTCCTCCCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTCTGTTTTTGTTCAAATTCGAATATTCCTATTTTCCAGATTTTCCT</left_flank>
        <right_flank>CTCCTCCCTCTCCGATTTCTTTCCGCGCGCCACACATTCATATCCGCCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGATTGCAAGCGCGCTCTGTTGGACAAGAAAAAGCGAGGGAGATTTGAATTTTGAAGGCTCGGAGGGGAAAAGGAGACTTTTGGAGTTTGGACGGGTTTTGAACTAGATTTTCGGGTAGAAAAAGTGAAAAATTGGGAAAAAGAAAAAAACAAGAAAATTACACAAAAAATAAGGAAAACGTTGTTTTTGAAAAACTGGAAAATCTATGAGAACTTGAAATTCTTACGAAACAAAAAACAAATTTTTAGAATTTCAAAACTTCTGAATTTCTGAACTTCTATTTTTCAAAATTTTCGGAATTCTGGAATTTCGGAATTTCTAAATTTCTGAAGTTTTGTAGTTTTTCGATTTTTTTCCAGATTCTCCTTTTTTTTTTCATTGAAAAACAACCCTTTTCTGACCATTTTTAATATATATTTTTAATATAATTTATGATATAAATAAGGTTTTTCTGTTTTTGTTCAAATTCGAATATTCCTATTTTCCAGATTTTCCTCCTCCTCCCTCTCCGATTTCTTTCCGCGCGCCACACATTCATATCCGCCTTCCGCCCCTTTGTAAAGAGTTGCACGCGTGGCCGACTAGCTAACGAGCCTGCTTTTGAACCCCACCGGTGGAGAGCCTCCCGGGTTCGACTCCCCGCCTATTTCCTTTTTGTTTTGTTTTTCTGCGCTTGTAGTATTGTAAAATTGCTTTCTTTTGATCATCGGTCGCTCAAAAAAAGTGACCGCCCGTCTTCCTCTTCTTCCCGCACTCACTCAATAAATACCGCCCATCTTTTCTCTGTCACTCATCACACTATTTCGTTGTTGTTTGTGGCAGAGGGGAAAAAAAGAAGATAGAGTGAGGAGAATGTGTGTCGCCATCGCTATTCAGTTTCTATGAAACCTTGATAGGGTTTTCAGGACGTTTTTTGAAACAAAAACTTTTTTTGAAAAATTGGACCTTCTAGAACTTTTTTCCCCAATTGAAACTTTTTCATAATTCCAGGTACTGT</canonical>
            <polymorphic>AGAGATTGCAAGCGCGCTCTGTTGGACAAGAAAAAGCGAGGGAGATTTGAATTTTGAAGGCTCGGAGGGGAAAAGGAGACTTTTGGAGTTTGGACGGGTTTTGAACTAGATTTTCGGGTAGAAAAAGTGAAAAATTGGGAAAAAGAAAAAAACAAGAAAATTACACAAAAAATAAGGAAAACGTTGTTTTTGAAAAACTGGAAAATCTATGAGAACTTGAAATTCTTACGAAACAAAAAACAAATTTTTAGAATTTCAAAACTTCTGAATTTCTGAACTTCTATTTTTCAAAATTTTCGGAATTCTGGAATTTCGGAATTTCTAAATTTCTGAAGTTTTGTAGTTTTTCGATTTTTTTCCAGATTCTCCTTTTTTTTTTCATTGAAAAACAACCCTTTTCTGACCATTTTTAATATATATTTTTAATATAATTTATGATATAAATAAGGTTTTTCTGTTTTTGTTCAAATTCGAATATTCCTATTTTCCAGATTTTCCTYCTCCTCCCTCTCCGATTTCTTTCCGCGCGCCACACATTCATATCCGCCTTCCGCCCCTTTGTAAAGAGTTGCACGCGTGGCCGACTAGCTAACGAGCCTGCTTTTGAACCCCACCGGTGGAGAGCCTCCCGGGTTCGACTCCCCGCCTATTTCCTTTTTGTTTTGTTTTTCTGCGCTTGTAGTATTGTAAAATTGCTTTCTTTTGATCATCGGTCGCTCAAAAAAAGTGACCGCCCGTCTTCCTCTTCTTCCCGCACTCACTCAATAAATACCGCCCATCTTTTCTCTGTCACTCATCACACTATTTCGTTGTTGTTTGTGGCAGAGGGGAAAAAAAGAAGATAGAGTGAGGAGAATGTGTGTCGCCATCGCTATTCAGTTTCTATGAAACCTTGATAGGGTTTTCAGGACGTTTTTTGAAACAAAAACTTTTTTTGAAAAATTGGACCTTCTAGAACTTTTTTCCCCAATTGAAACTTTTTCATAATTCCAGGTACTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACAACCCTTTTCTGAC</pcr_primer_p1>
		<pcr_primer_p2>AAACAAAACAAAAAGGAAATAGG</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACAACCCTTTTCTGACCATTTTTAATATATATTTTTAATATAATTTATGATATAAATAAGGTTTTTCTGTTTTTGTTCAAATTCGAATATTCCTATTTTCCAGATTTTCCTCCTCCTCCCTCTCCGATTTCTTTCCGCGCGCCACACATTCATATCCGCCTTCCGCCCCTTTGTAAAGAGTTGCACGCGTGGCCGACTAGCTAACGAGCCTGCTTTTGAACCCCACCGGTGGAGAGCCTCCCGGGTTCGACTCCCCGCCTATTTCCTTTTTGTTTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACAACCCTTTTCTGACCATTTTTAATATATATTTTTAATATAATTTATGATATAAATAAGGTTTTTCTGTTTTTGTTCAAATTCGAATATTCCTATTTTCCAGATTTTCCTYCTCCTCCCTCTCCGATTTCTTTCCGCGCGCCACACATTCATATCCGCCTTCCGCCCCTTTGTAAAGAGTTGCACGCGTGGCCGACTAGCTAACGAGCCTGCTTTTGAACCCCACCGGTGGAGAGCCTCCCGGGTTCGACTCCCCGCCTATTTCCTTTTTGTTTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29863</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>221038</contig_pos>
        <strand>+</strand>
        <context>CTTCCGCCCC[C/T]TTGTAAAGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCTCCGATTTCTTTCCGCGCGCCACACATTCATATCCGCCTTCCGCCCC</left_flank>
        <right_flank>TTGTAAAGAGTTGCACGCGTGGCCGACTAGCTAACGAGCCTGCTTTTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTCGGAGGGGAAAAGGAGACTTTTGGAGTTTGGACGGGTTTTGAACTAGATTTTCGGGTAGAAAAAGTGAAAAATTGGGAAAAAGAAAAAAACAAGAAAATTACACAAAAAATAAGGAAAACGTTGTTTTTGAAAAACTGGAAAATCTATGAGAACTTGAAATTCTTACGAAACAAAAAACAAATTTTTAGAATTTCAAAACTTCTGAATTTCTGAACTTCTATTTTTCAAAATTTTCGGAATTCTGGAATTTCGGAATTTCTAAATTTCTGAAGTTTTGTAGTTTTTCGATTTTTTTCCAGATTCTCCTTTTTTTTTTCATTGAAAAACAACCCTTTTCTGACCATTTTTAATATATATTTTTAATATAATTTATGATATAAATAAGGTTTTTCTGTTTTTGTTCAAATTCGAATATTCCTATTTTCCAGATTTTCCTCCTCCTCCCTCTCCGATTTCTTTCCGCGCGCCACACATTCATATCCGCCTTCCGCCCCTTTGTAAAGAGTTGCACGCGTGGCCGACTAGCTAACGAGCCTGCTTTTGAACCCCACCGGTGGAGAGCCTCCCGGGTTCGACTCCCCGCCTATTTCCTTTTTGTTTTGTTTTTCTGCGCTTGTAGTATTGTAAAATTGCTTTCTTTTGATCATCGGTCGCTCAAAAAAAGTGACCGCCCGTCTTCCTCTTCTTCCCGCACTCACTCAATAAATACCGCCCATCTTTTCTCTGTCACTCATCACACTATTTCGTTGTTGTTTGTGGCAGAGGGGAAAAAAAGAAGATAGAGTGAGGAGAATGTGTGTCGCCATCGCTATTCAGTTTCTATGAAACCTTGATAGGGTTTTCAGGACGTTTTTTGAAACAAAAACTTTTTTTGAAAAATTGGACCTTCTAGAACTTTTTTCCCCAATTGAAACTTTTTCATAATTCCAGGTACTGTAGTTCACAATTTTAACAATGACTGATTCAAATTTAAGCATGAGCAATCTCTTCTATAA</canonical>
            <polymorphic>GGCTCGGAGGGGAAAAGGAGACTTTTGGAGTTTGGACGGGTTTTGAACTAGATTTTCGGGTAGAAAAAGTGAAAAATTGGGAAAAAGAAAAAAACAAGAAAATTACACAAAAAATAAGGAAAACGTTGTTTTTGAAAAACTGGAAAATCTATGAGAACTTGAAATTCTTACGAAACAAAAAACAAATTTTTAGAATTTCAAAACTTCTGAATTTCTGAACTTCTATTTTTCAAAATTTTCGGAATTCTGGAATTTCGGAATTTCTAAATTTCTGAAGTTTTGTAGTTTTTCGATTTTTTTCCAGATTCTCCTTTTTTTTTTCATTGAAAAACAACCCTTTTCTGACCATTTTTAATATATATTTTTAATATAATTTATGATATAAATAAGGTTTTTCTGTTTTTGTTCAAATTCGAATATTCCTATTTTCCAGATTTTCCTCCTCCTCCCTCTCCGATTTCTTTCCGCGCGCCACACATTCATATCCGCCTTCCGCCCCYTTGTAAAGAGTTGCACGCGTGGCCGACTAGCTAACGAGCCTGCTTTTGAACCCCACCGGTGGAGAGCCTCCCGGGTTCGACTCCCCGCCTATTTCCTTTTTGTTTTGTTTTTCTGCGCTTGTAGTATTGTAAAATTGCTTTCTTTTGATCATCGGTCGCTCAAAAAAAGTGACCGCCCGTCTTCCTCTTCTTCCCGCACTCACTCAATAAATACCGCCCATCTTTTCTCTGTCACTCATCACACTATTTCGTTGTTGTTTGTGGCAGAGGGGAAAAAAAGAAGATAGAGTGAGGAGAATGTGTGTCGCCATCGCTATTCAGTTTCTATGAAACCTTGATAGGGTTTTCAGGACGTTTTTTGAAACAAAAACTTTTTTTGAAAAATTGGACCTTCTAGAACTTTTTTCCCCAATTGAAACTTTTTCATAATTCCAGGTACTGTAGTTCACAATTTTAACAATGACTGATTCAAATTTAAGCATGAGCAATCTCTTCTATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACAACCCTTTTCTGAC</pcr_primer_p1>
		<pcr_primer_p2>AAACAAAACAAAAAGGAAATAGG</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACAACCCTTTTCTGACCATTTTTAATATATATTTTTAATATAATTTATGATATAAATAAGGTTTTTCTGTTTTTGTTCAAATTCGAATATTCCTATTTTCCAGATTTTCCTCCTCCTCCCTCTCCGATTTCTTTCCGCGCGCCACACATTCATATCCGCCTTCCGCCCCTTTGTAAAGAGTTGCACGCGTGGCCGACTAGCTAACGAGCCTGCTTTTGAACCCCACCGGTGGAGAGCCTCCCGGGTTCGACTCCCCGCCTATTTCCTTTTTGTTTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACAACCCTTTTCTGACCATTTTTAATATATATTTTTAATATAATTTATGATATAAATAAGGTTTTTCTGTTTTTGTTCAAATTCGAATATTCCTATTTTCCAGATTTTCCTCCTCCTCCCTCTCCGATTTCTTTCCGCGCGCCACACATTCATATCCGCCTTCCGCCCCYTTGTAAAGAGTTGCACGCGTGGCCGACTAGCTAACGAGCCTGCTTTTGAACCCCACCGGTGGAGAGCCTCCCGGGTTCGACTCCCCGCCTATTTCCTTTTTGTTTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29864</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>221067</contig_pos>
        <strand>+</strand>
        <context>GTGGCCGACT[A/G]RCTAACGAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCATATCCGCCTTCCGCCCCTTTGTAAAGAGTTGCACGCGTGGCCGACT</left_flank>
        <right_flank>GCTAACGAGCCTGCTTTTGAACCCCACCGGTGGAGAGCCTCCCGGGTTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTGGACGGGTTTTGAACTAGATTTTCGGGTAGAAAAAGTGAAAAATTGGGAAAAAGAAAAAAACAAGAAAATTACACAAAAAATAAGGAAAACGTTGTTTTTGAAAAACTGGAAAATCTATGAGAACTTGAAATTCTTACGAAACAAAAAACAAATTTTTAGAATTTCAAAACTTCTGAATTTCTGAACTTCTATTTTTCAAAATTTTCGGAATTCTGGAATTTCGGAATTTCTAAATTTCTGAAGTTTTGTAGTTTTTCGATTTTTTTCCAGATTCTCCTTTTTTTTTTCATTGAAAAACAACCCTTTTCTGACCATTTTTAATATATATTTTTAATATAATTTATGATATAAATAAGGTTTTTCTGTTTTTGTTCAAATTCGAATATTCCTATTTTCCAGATTTTCCTCCTCCTCCCTCTCCGATTTCTTTCCGCGCGCCACACATTCATATCCGCCTTCCGCCCCTTTGTAAAGAGTTGCACGCGTGGCCGACTAGCTAACGAGCCTGCTTTTGAACCCCACCGGTGGAGAGCCTCCCGGGTTCGACTCCCCGCCTATTTCCTTTTTGTTTTGTTTTTCTGCGCTTGTAGTATTGTAAAATTGCTTTCTTTTGATCATCGGTCGCTCAAAAAAAGTGACCGCCCGTCTTCCTCTTCTTCCCGCACTCACTCAATAAATACCGCCCATCTTTTCTCTGTCACTCATCACACTATTTCGTTGTTGTTTGTGGCAGAGGGGAAAAAAAGAAGATAGAGTGAGGAGAATGTGTGTCGCCATCGCTATTCAGTTTCTATGAAACCTTGATAGGGTTTTCAGGACGTTTTTTGAAACAAAAACTTTTTTTGAAAAATTGGACCTTCTAGAACTTTTTTCCCCAATTGAAACTTTTTCATAATTCCAGGTACTGTAGTTCACAATTTTAACAATGACTGATTCAAATTTAAGCATGAGCAATCTCTTCTATAAATTTTTTGTACGAAAAATACAAAATATTA</canonical>
            <polymorphic>GTTTGGACGGGTTTTGAACTAGATTTTCGGGTAGAAAAAGTGAAAAATTGGGAAAAAGAAAAAAACAAGAAAATTACACAAAAAATAAGGAAAACGTTGTTTTTGAAAAACTGGAAAATCTATGAGAACTTGAAATTCTTACGAAACAAAAAACAAATTTTTAGAATTTCAAAACTTCTGAATTTCTGAACTTCTATTTTTCAAAATTTTCGGAATTCTGGAATTTCGGAATTTCTAAATTTCTGAAGTTTTGTAGTTTTTCGATTTTTTTCCAGATTCTCCTTTTTTTTTTCATTGAAAAACAACCCTTTTCTGACCATTTTTAATATATATTTTTAATATAATTTATGATATAAATAAGGTTTTTCTGTTTTTGTTCAAATTCGAATATTCCTATTTTCCAGATTTTCCTCCTCCTCCCTCTCCGATTTCTTTCCGCGCGCCACACATTCATATCCGCCTTCCGCCCCTTTGTAAAGAGTTGCACGCGTGGCCGACTRGCTAACGAGCCTGCTTTTGAACCCCACCGGTGGAGAGCCTCCCGGGTTCGACTCCCCGCCTATTTCCTTTTTGTTTTGTTTTTCTGCGCTTGTAGTATTGTAAAATTGCTTTCTTTTGATCATCGGTCGCTCAAAAAAAGTGACCGCCCGTCTTCCTCTTCTTCCCGCACTCACTCAATAAATACCGCCCATCTTTTCTCTGTCACTCATCACACTATTTCGTTGTTGTTTGTGGCAGAGGGGAAAAAAAGAAGATAGAGTGAGGAGAATGTGTGTCGCCATCGCTATTCAGTTTCTATGAAACCTTGATAGGGTTTTCAGGACGTTTTTTGAAACAAAAACTTTTTTTGAAAAATTGGACCTTCTAGAACTTTTTTCCCCAATTGAAACTTTTTCATAATTCCAGGTACTGTAGTTCACAATTTTAACAATGACTGATTCAAATTTAAGCATGAGCAATCTCTTCTATAAATTTTTTGTACGAAAAATACAAAATATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>479 367 135 19</canonical_bands>
                <polymorphic_bands>846 135 19</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>493 463 28 8 8</canonical_bands>
                <polymorphic_bands>493 463 28 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACAACCCTTTTCTGAC</pcr_primer_p1>
		<pcr_primer_p2>AAACAAAACAAAAAGGAAATAGG</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACAACCCTTTTCTGACCATTTTTAATATATATTTTTAATATAATTTATGATATAAATAAGGTTTTTCTGTTTTTGTTCAAATTCGAATATTCCTATTTTCCAGATTTTCCTCCTCCTCCCTCTCCGATTTCTTTCCGCGCGCCACACATTCATATCCGCCTTCCGCCCCTTTGTAAAGAGTTGCACGCGTGGCCGACTAGCTAACGAGCCTGCTTTTGAACCCCACCGGTGGAGAGCCTCCCGGGTTCGACTCCCCGCCTATTTCCTTTTTGTTTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACAACCCTTTTCTGACCATTTTTAATATATATTTTTAATATAATTTATGATATAAATAAGGTTTTTCTGTTTTTGTTCAAATTCGAATATTCCTATTTTCCAGATTTTCCTCCTCCTCCCTCTCCGATTTCTTTCCGCGCGCCACACATTCATATCCGCCTTCCGCCCCTTTGTAAAGAGTTGCACGCGTGGCCGACTRGCTAACGAGCCTGCTTTTGAACCCCACCGGTGGAGAGCCTCCCGGGTTCGACTCCCCGCCTATTTCCTTTTTGTTTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29865</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>221068</contig_pos>
        <strand>+</strand>
        <context>TGGCCGACTR[A/G]CTAACGAGCC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATATCCGCCTTCCGCCCCTTTGTAAAGAGTTGCACGCGTGGCCGACTA</left_flank>
        <right_flank>CTAACGAGCCTGCTTTTGAACCCCACCGGTGGAGAGCCTCCCGGGTTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGGACGGGTTTTGAACTAGATTTTCGGGTAGAAAAAGTGAAAAATTGGGAAAAAGAAAAAAACAAGAAAATTACACAAAAAATAAGGAAAACGTTGTTTTTGAAAAACTGGAAAATCTATGAGAACTTGAAATTCTTACGAAACAAAAAACAAATTTTTAGAATTTCAAAACTTCTGAATTTCTGAACTTCTATTTTTCAAAATTTTCGGAATTCTGGAATTTCGGAATTTCTAAATTTCTGAAGTTTTGTAGTTTTTCGATTTTTTTCCAGATTCTCCTTTTTTTTTTCATTGAAAAACAACCCTTTTCTGACCATTTTTAATATATATTTTTAATATAATTTATGATATAAATAAGGTTTTTCTGTTTTTGTTCAAATTCGAATATTCCTATTTTCCAGATTTTCCTCCTCCTCCCTCTCCGATTTCTTTCCGCGCGCCACACATTCATATCCGCCTTCCGCCCCTTTGTAAAGAGTTGCACGCGTGGCCGACTAGCTAACGAGCCTGCTTTTGAACCCCACCGGTGGAGAGCCTCCCGGGTTCGACTCCCCGCCTATTTCCTTTTTGTTTTGTTTTTCTGCGCTTGTAGTATTGTAAAATTGCTTTCTTTTGATCATCGGTCGCTCAAAAAAAGTGACCGCCCGTCTTCCTCTTCTTCCCGCACTCACTCAATAAATACCGCCCATCTTTTCTCTGTCACTCATCACACTATTTCGTTGTTGTTTGTGGCAGAGGGGAAAAAAAGAAGATAGAGTGAGGAGAATGTGTGTCGCCATCGCTATTCAGTTTCTATGAAACCTTGATAGGGTTTTCAGGACGTTTTTTGAAACAAAAACTTTTTTTGAAAAATTGGACCTTCTAGAACTTTTTTCCCCAATTGAAACTTTTTCATAATTCCAGGTACTGTAGTTCACAATTTTAACAATGACTGATTCAAATTTAAGCATGAGCAATCTCTTCTATAAATTTTTTGTACGAAAAATACAAAATATTAG</canonical>
            <polymorphic>TTTGGACGGGTTTTGAACTAGATTTTCGGGTAGAAAAAGTGAAAAATTGGGAAAAAGAAAAAAACAAGAAAATTACACAAAAAATAAGGAAAACGTTGTTTTTGAAAAACTGGAAAATCTATGAGAACTTGAAATTCTTACGAAACAAAAAACAAATTTTTAGAATTTCAAAACTTCTGAATTTCTGAACTTCTATTTTTCAAAATTTTCGGAATTCTGGAATTTCGGAATTTCTAAATTTCTGAAGTTTTGTAGTTTTTCGATTTTTTTCCAGATTCTCCTTTTTTTTTTCATTGAAAAACAACCCTTTTCTGACCATTTTTAATATATATTTTTAATATAATTTATGATATAAATAAGGTTTTTCTGTTTTTGTTCAAATTCGAATATTCCTATTTTCCAGATTTTCCTCCTCCTCCCTCTCCGATTTCTTTCCGCGCGCCACACATTCATATCCGCCTTCCGCCCCTTTGTAAAGAGTTGCACGCGTGGCCGACTARCTAACGAGCCTGCTTTTGAACCCCACCGGTGGAGAGCCTCCCGGGTTCGACTCCCCGCCTATTTCCTTTTTGTTTTGTTTTTCTGCGCTTGTAGTATTGTAAAATTGCTTTCTTTTGATCATCGGTCGCTCAAAAAAAGTGACCGCCCGTCTTCCTCTTCTTCCCGCACTCACTCAATAAATACCGCCCATCTTTTCTCTGTCACTCATCACACTATTTCGTTGTTGTTTGTGGCAGAGGGGAAAAAAAGAAGATAGAGTGAGGAGAATGTGTGTCGCCATCGCTATTCAGTTTCTATGAAACCTTGATAGGGTTTTCAGGACGTTTTTTGAAACAAAAACTTTTTTTGAAAAATTGGACCTTCTAGAACTTTTTTCCCCAATTGAAACTTTTTCATAATTCCAGGTACTGTAGTTCACAATTTTAACAATGACTGATTCAAATTTAAGCATGAGCAATCTCTTCTATAAATTTTTTGTACGAAAAATACAAAATATTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>479 367 136 18</canonical_bands>
                <polymorphic_bands>846 136 18</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>492 464 28 8 8</canonical_bands>
                <polymorphic_bands>492 464 28 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACAACCCTTTTCTGAC</pcr_primer_p1>
		<pcr_primer_p2>AAACAAAACAAAAAGGAAATAGG</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACAACCCTTTTCTGACCATTTTTAATATATATTTTTAATATAATTTATGATATAAATAAGGTTTTTCTGTTTTTGTTCAAATTCGAATATTCCTATTTTCCAGATTTTCCTCCTCCTCCCTCTCCGATTTCTTTCCGCGCGCCACACATTCATATCCGCCTTCCGCCCCTTTGTAAAGAGTTGCACGCGTGGCCGACTAGCTAACGAGCCTGCTTTTGAACCCCACCGGTGGAGAGCCTCCCGGGTTCGACTCCCCGCCTATTTCCTTTTTGTTTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACAACCCTTTTCTGACCATTTTTAATATATATTTTTAATATAATTTATGATATAAATAAGGTTTTTCTGTTTTTGTTCAAATTCGAATATTCCTATTTTCCAGATTTTCCTCCTCCTCCCTCTCCGATTTCTTTCCGCGCGCCACACATTCATATCCGCCTTCCGCCCCTTTGTAAAGAGTTGCACGCGTGGCCGACTARCTAACGAGCCTGCTTTTGAACCCCACCGGTGGAGAGCCTCCCGGGTTCGACTCCCCGCCTATTTCCTTTTTGTTTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29872</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>257880</contig_pos>
        <strand>+</strand>
        <context>TCGTTCCCTT[A/G]TCACGTCTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACAAATTGAGTTTTCTCGAATTCTGGCTAGACTTTCAAATCGTTCCCTT</left_flank>
        <right_flank>TCACGTCTTCTTCCTTGACGCTTTCGGATTCTCTCAAATTCTCTTTTTCC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAAAAAGATGAATCTTCTGAAGCAGAACAGTTCAATAAGGTATACTTTTTTAATAATGAGAGTTTTGTTACAGTTTCGGATGAAATAAGAAACAAAAGAAAACATTAATTAGATTTCAAAATAGTTTGAAAAATATTTAATTAATAAAAGTGTTGGACTAGGCATAAAAACGCCGGCGGCCGCCGCCGTTCGCCGGCTGCAGCCGAGTCGTCGCAGCCGGCTAGCCGGCGAAACGCCGAAATTTTGCCGCCGTTTTTCCGCCGCCGCGCCGCCGGCGTTTGTTTTTCCCAGCCCTGTTCTAAGCTATATATCTCGAGAACTACAAGAGCTACTGAAAAATTTCCAACTAACAAAATGTGTGAAATTGCAAGCTATAAAATTTACAATTTTTGAAAATTCAAAAAACTTTATTATTTTTTGAGATACACCACAAAATACAAAATTATATACAAATTGAGTTTTCTCGAATTCTGGCTAGACTTTCAAATCGTTCCCTTATCACGTCTTCTTCCTTGACGCTTTCGGATTCTCTCAAATTCTCTTTTTCCTTCAATTCCACATCATTCTCTTCGATTTTCGCCCATTCTTGAAGATCTCCAGAGCCAAAAAAGATGAAAATTGCGCCGGAAAGTATATGAAGTAGTGCGAGGATAATGAAAATGTTCTTCCATTCCGAGAGCGTTCCCTTTAATTTTTTAAACCAATTTCATGAAAAGTCTCGTATCTTTAAAACCAGCAGAGCTATTGAAGTTTTTAAAACTACAAAATTGTAGAACATAAAATTTCACACATTTTGTTATTTGAAAATTTTTAGATATCTTTCATGGTTCTCGAGATACAGGGCTTAGAAGATAGGGCGCGTTTGTCGGCGAGGGAAGAAGAGACGCAGAGAAAAATTGGACGCGCCACCATTTCTCTGCGTCTCTCCCTCATTCTCCTTGCGAGGTTGGCTCGGCGCCTTAGCTTTCAAGCGTTATATCTCGAGAACTATAAGAGCT</canonical>
            <polymorphic>ACCAAAAAGATGAATCTTCTGAAGCAGAACAGTTCAATAAGGTATACTTTTTTAATAATGAGAGTTTTGTTACAGTTTCGGATGAAATAAGAAACAAAAGAAAACATTAATTAGATTTCAAAATAGTTTGAAAAATATTTAATTAATAAAAGTGTTGGACTAGGCATAAAAACGCCGGCGGCCGCCGCCGTTCGCCGGCTGCAGCCGAGTCGTCGCAGCCGGCTAGCCGGCGAAACGCCGAAATTTTGCCGCCGTTTTTCCGCCGCCGCGCCGCCGGCGTTTGTTTTTCCCAGCCCTGTTCTAAGCTATATATCTCGAGAACTACAAGAGCTACTGAAAAATTTCCAACTAACAAAATGTGTGAAATTGCAAGCTATAAAATTTACAATTTTTGAAAATTCAAAAAACTTTATTATTTTTTGAGATACACCACAAAATACAAAATTATATACAAATTGAGTTTTCTCGAATTCTGGCTAGACTTTCAAATCGTTCCCTTRTCACGTCTTCTTCCTTGACGCTTTCGGATTCTCTCAAATTCTCTTTTTCCTTCAATTCCACATCATTCTCTTCGATTTTCGCCCATTCTTGAAGATCTCCAGAGCCAAAAAAGATGAAAATTGCGCCGGAAAGTATATGAAGTAGTGCGAGGATAATGAAAATGTTCTTCCATTCCGAGAGCGTTCCCTTTAATTTTTTAAACCAATTTCATGAAAAGTCTCGTATCTTTAAAACCAGCAGAGCTATTGAAGTTTTTAAAACTACAAAATTGTAGAACATAAAATTTCACACATTTTGTTATTTGAAAATTTTTAGATATCTTTCATGGTTCTCGAGATACAGGGCTTAGAAGATAGGGCGCGTTTGTCGGCGAGGGAAGAAGAGACGCAGAGAAAAATTGGACGCGCCACCATTTCTCTGCGTCTCTCCCTCATTCTCCTTGCGAGGTTGGCTCGGCGCCTTAGCTTTCAAGCGTTATATCTCGAGAACTATAAGAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGATACACCACAAAATACAAA</pcr_primer_p1>
		<pcr_primer_p2>GGAAGAACATTTTCATTATCCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGAGATACACCACAAAATACAAAATTATATACAAATTGAGTTTTCTCGAATTCTGGCTAGACTTTCAAATCGTTCCCTTATCACGTCTTCTTCCTTGACGCTTTCGGATTCTCTCAAATTCTCTTTTTCCTTCAATTCCACATCATTCTCTTCGATTTTCGCCCATTCTTGAAGATCTCCAGAGCCAAAAAAGATGAAAATTGCGCCGGAAAGTATATGAAGTAGTGCGAGGATAATGAAAATGTTCTTCC</canonical_amplicon>
		<polymorphic_amplicon>TGAGATACACCACAAAATACAAAATTATATACAAATTGAGTTTTCTCGAATTCTGGCTAGACTTTCAAATCGTTCCCTTRTCACGTCTTCTTCCTTGACGCTTTCGGATTCTCTCAAATTCTCTTTTTCCTTCAATTCCACATCATTCTCTTCGATTTTCGCCCATTCTTGAAGATCTCCAGAGCCAAAAAAGATGAAAATTGCGCCGGAAAGTATATGAAGTAGTGCGAGGATAATGAAAATGTTCTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29873</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>257987</contig_pos>
        <strand>+</strand>
        <context>CTCCAGAGCC[A/G]AAAAAGATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCACATCATTCTCTTCGATTTTCGCCCATTCTTGAAGATCTCCAGAGCC</left_flank>
        <right_flank>AAAAAGATGAAAATTGCGCCGGAAAGTATATGAAGTAGTGCGAGGATAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTAGATTTCAAAATAGTTTGAAAAATATTTAATTAATAAAAGTGTTGGACTAGGCATAAAAACGCCGGCGGCCGCCGCCGTTCGCCGGCTGCAGCCGAGTCGTCGCAGCCGGCTAGCCGGCGAAACGCCGAAATTTTGCCGCCGTTTTTCCGCCGCCGCGCCGCCGGCGTTTGTTTTTCCCAGCCCTGTTCTAAGCTATATATCTCGAGAACTACAAGAGCTACTGAAAAATTTCCAACTAACAAAATGTGTGAAATTGCAAGCTATAAAATTTACAATTTTTGAAAATTCAAAAAACTTTATTATTTTTTGAGATACACCACAAAATACAAAATTATATACAAATTGAGTTTTCTCGAATTCTGGCTAGACTTTCAAATCGTTCCCTTATCACGTCTTCTTCCTTGACGCTTTCGGATTCTCTCAAATTCTCTTTTTCCTTCAATTCCACATCATTCTCTTCGATTTTCGCCCATTCTTGAAGATCTCCAGAGCCAAAAAAGATGAAAATTGCGCCGGAAAGTATATGAAGTAGTGCGAGGATAATGAAAATGTTCTTCCATTCCGAGAGCGTTCCCTTTAATTTTTTAAACCAATTTCATGAAAAGTCTCGTATCTTTAAAACCAGCAGAGCTATTGAAGTTTTTAAAACTACAAAATTGTAGAACATAAAATTTCACACATTTTGTTATTTGAAAATTTTTAGATATCTTTCATGGTTCTCGAGATACAGGGCTTAGAAGATAGGGCGCGTTTGTCGGCGAGGGAAGAAGAGACGCAGAGAAAAATTGGACGCGCCACCATTTCTCTGCGTCTCTCCCTCATTCTCCTTGCGAGGTTGGCTCGGCGCCTTAGCTTTCAAGCGTTATATCTCGAGAACTATAAGAGCTATTAAAGAATTTCCAACTAATGAAATGTTTCAAATTTTATGCTTTACAGTTTCAAATTTTCAAAATGTTTCTAACTTCCATAGTTTTTGAGATATGAGCGTGTATAG</canonical>
            <polymorphic>TAATTAGATTTCAAAATAGTTTGAAAAATATTTAATTAATAAAAGTGTTGGACTAGGCATAAAAACGCCGGCGGCCGCCGCCGTTCGCCGGCTGCAGCCGAGTCGTCGCAGCCGGCTAGCCGGCGAAACGCCGAAATTTTGCCGCCGTTTTTCCGCCGCCGCGCCGCCGGCGTTTGTTTTTCCCAGCCCTGTTCTAAGCTATATATCTCGAGAACTACAAGAGCTACTGAAAAATTTCCAACTAACAAAATGTGTGAAATTGCAAGCTATAAAATTTACAATTTTTGAAAATTCAAAAAACTTTATTATTTTTTGAGATACACCACAAAATACAAAATTATATACAAATTGAGTTTTCTCGAATTCTGGCTAGACTTTCAAATCGTTCCCTTATCACGTCTTCTTCCTTGACGCTTTCGGATTCTCTCAAATTCTCTTTTTCCTTCAATTCCACATCATTCTCTTCGATTTTCGCCCATTCTTGAAGATCTCCAGAGCCRAAAAAGATGAAAATTGCGCCGGAAAGTATATGAAGTAGTGCGAGGATAATGAAAATGTTCTTCCATTCCGAGAGCGTTCCCTTTAATTTTTTAAACCAATTTCATGAAAAGTCTCGTATCTTTAAAACCAGCAGAGCTATTGAAGTTTTTAAAACTACAAAATTGTAGAACATAAAATTTCACACATTTTGTTATTTGAAAATTTTTAGATATCTTTCATGGTTCTCGAGATACAGGGCTTAGAAGATAGGGCGCGTTTGTCGGCGAGGGAAGAAGAGACGCAGAGAAAAATTGGACGCGCCACCATTTCTCTGCGTCTCTCCCTCATTCTCCTTGCGAGGTTGGCTCGGCGCCTTAGCTTTCAAGCGTTATATCTCGAGAACTATAAGAGCTATTAAAGAATTTCCAACTAATGAAATGTTTCAAATTTTATGCTTTACAGTTTCAAATTTTCAAAATGTTTCTAACTTCCATAGTTTTTGAGATATGAGCGTGTATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGATACACCACAAAATACAAA</pcr_primer_p1>
		<pcr_primer_p2>GGAAGAACATTTTCATTATCCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGAGATACACCACAAAATACAAAATTATATACAAATTGAGTTTTCTCGAATTCTGGCTAGACTTTCAAATCGTTCCCTTATCACGTCTTCTTCCTTGACGCTTTCGGATTCTCTCAAATTCTCTTTTTCCTTCAATTCCACATCATTCTCTTCGATTTTCGCCCATTCTTGAAGATCTCCAGAGCCAAAAAAGATGAAAATTGCGCCGGAAAGTATATGAAGTAGTGCGAGGATAATGAAAATGTTCTTCC</canonical_amplicon>
		<polymorphic_amplicon>TGAGATACACCACAAAATACAAAATTATATACAAATTGAGTTTTCTCGAATTCTGGCTAGACTTTCAAATCGTTCCCTTATCACGTCTTCTTCCTTGACGCTTTCGGATTCTCTCAAATTCTCTTTTTCCTTCAATTCCACATCATTCTCTTCGATTTTCGCCCATTCTTGAAGATCTCCAGAGCCRAAAAAGATGAAAATTGCGCCGGAAAGTATATGAAGTAGTGCGAGGATAATGAAAATGTTCTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29874</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>258004</contig_pos>
        <strand>+</strand>
        <context>ATGAAAATTG[A/C]GCCGGAAAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATTTTCGCCCATTCTTGAAGATCTCCAGAGCCAAAAAAGATGAAAATTG</left_flank>
        <right_flank>GCCGGAAAGTATATGAAGTAGTGCGAGGATAATGAAAATGTTCTTCCATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTTGAAAAATATTTAATTAATAAAAGTGTTGGACTAGGCATAAAAACGCCGGCGGCCGCCGCCGTTCGCCGGCTGCAGCCGAGTCGTCGCAGCCGGCTAGCCGGCGAAACGCCGAAATTTTGCCGCCGTTTTTCCGCCGCCGCGCCGCCGGCGTTTGTTTTTCCCAGCCCTGTTCTAAGCTATATATCTCGAGAACTACAAGAGCTACTGAAAAATTTCCAACTAACAAAATGTGTGAAATTGCAAGCTATAAAATTTACAATTTTTGAAAATTCAAAAAACTTTATTATTTTTTGAGATACACCACAAAATACAAAATTATATACAAATTGAGTTTTCTCGAATTCTGGCTAGACTTTCAAATCGTTCCCTTATCACGTCTTCTTCCTTGACGCTTTCGGATTCTCTCAAATTCTCTTTTTCCTTCAATTCCACATCATTCTCTTCGATTTTCGCCCATTCTTGAAGATCTCCAGAGCCAAAAAAGATGAAAATTGCGCCGGAAAGTATATGAAGTAGTGCGAGGATAATGAAAATGTTCTTCCATTCCGAGAGCGTTCCCTTTAATTTTTTAAACCAATTTCATGAAAAGTCTCGTATCTTTAAAACCAGCAGAGCTATTGAAGTTTTTAAAACTACAAAATTGTAGAACATAAAATTTCACACATTTTGTTATTTGAAAATTTTTAGATATCTTTCATGGTTCTCGAGATACAGGGCTTAGAAGATAGGGCGCGTTTGTCGGCGAGGGAAGAAGAGACGCAGAGAAAAATTGGACGCGCCACCATTTCTCTGCGTCTCTCCCTCATTCTCCTTGCGAGGTTGGCTCGGCGCCTTAGCTTTCAAGCGTTATATCTCGAGAACTATAAGAGCTATTAAAGAATTTCCAACTAATGAAATGTTTCAAATTTTATGCTTTACAGTTTCAAATTTTCAAAATGTTTCTAACTTCCATAGTTTTTGAGATATGAGCGTGTATAGCTCGCTAACTTCAAAAC</canonical>
            <polymorphic>AGTTTGAAAAATATTTAATTAATAAAAGTGTTGGACTAGGCATAAAAACGCCGGCGGCCGCCGCCGTTCGCCGGCTGCAGCCGAGTCGTCGCAGCCGGCTAGCCGGCGAAACGCCGAAATTTTGCCGCCGTTTTTCCGCCGCCGCGCCGCCGGCGTTTGTTTTTCCCAGCCCTGTTCTAAGCTATATATCTCGAGAACTACAAGAGCTACTGAAAAATTTCCAACTAACAAAATGTGTGAAATTGCAAGCTATAAAATTTACAATTTTTGAAAATTCAAAAAACTTTATTATTTTTTGAGATACACCACAAAATACAAAATTATATACAAATTGAGTTTTCTCGAATTCTGGCTAGACTTTCAAATCGTTCCCTTATCACGTCTTCTTCCTTGACGCTTTCGGATTCTCTCAAATTCTCTTTTTCCTTCAATTCCACATCATTCTCTTCGATTTTCGCCCATTCTTGAAGATCTCCAGAGCCAAAAAAGATGAAAATTGMGCCGGAAAGTATATGAAGTAGTGCGAGGATAATGAAAATGTTCTTCCATTCCGAGAGCGTTCCCTTTAATTTTTTAAACCAATTTCATGAAAAGTCTCGTATCTTTAAAACCAGCAGAGCTATTGAAGTTTTTAAAACTACAAAATTGTAGAACATAAAATTTCACACATTTTGTTATTTGAAAATTTTTAGATATCTTTCATGGTTCTCGAGATACAGGGCTTAGAAGATAGGGCGCGTTTGTCGGCGAGGGAAGAAGAGACGCAGAGAAAAATTGGACGCGCCACCATTTCTCTGCGTCTCTCCCTCATTCTCCTTGCGAGGTTGGCTCGGCGCCTTAGCTTTCAAGCGTTATATCTCGAGAACTATAAGAGCTATTAAAGAATTTCCAACTAATGAAATGTTTCAAATTTTATGCTTTACAGTTTCAAATTTTCAAAATGTTTCTAACTTCCATAGTTTTTGAGATATGAGCGTGTATAGCTCGCTAACTTCAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>355 236 165 146 52 46</canonical_bands>
                <polymorphic_bands>591 165 146 52 46</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTCTGGCTAGACTTTCAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAATTAAAGGGAACGCTCT</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>GAATTCTGGCTAGACTTTCAAATCGTTCCCTTATCACGTCTTCTTCCTTGACGCTTTCGGATTCTCTCAAATTCTCTTTTTCCTTCAATTCCACATCATTCTCTTCGATTTTCGCCCATTCTTGAAGATCTCCAGAGCCAAAAAAGATGAAAATTGCGCCGGAAAGTATATGAAGTAGTGCGAGGATAATGAAAATGTTCTTCCATTCCGAGAGCGTTCCCTTTAATTTT</canonical_amplicon>
		<polymorphic_amplicon>GAATTCTGGCTAGACTTTCAAATCGTTCCCTTATCACGTCTTCTTCCTTGACGCTTTCGGATTCTCTCAAATTCTCTTTTTCCTTCAATTCCACATCATTCTCTTCGATTTTCGCCCATTCTTGAAGATCTCCAGAGCCAAAAAAGATGAAAATTGMGCCGGAAAGTATATGAAGTAGTGCGAGGATAATGAAAATGTTCTTCCATTCCGAGAGCGTTCCCTTTAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29875</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>269785</contig_pos>
        <strand>+</strand>
        <context>AATTCGTCTT[A/C]ACCCCCTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCCGTTTTCCCTGTTATTTTTAATGCATAAATTTGTTTAAATTCGTCTT</left_flank>
        <right_flank>ACCCCCTTTTCAAGGGGTCTTTTCTCCAGGTCCCACCAGGTCCAGGTCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCCAGAAAGTGATCGCCGAGGCATTCAGAATTCTGAAGCCAGGAGGTCAACTGGCGATTCTCGAATTCTCGCAAGTCAACGCCGCGTTGAAGCCAATCTACGACGCCTACTCGTTCAATGTGATTCCGGTGCTTGGAGAGATACTAGCTAGCGATCGCCAGAGCTATCAATACCTCGTGGAATCGATTAGAAAGTTCCCGAACCAGGACGAATTCGCCAGAATTATCAGGGAGGAGGGATTCGAGAGAGTCACTTATGAGAATATGACTTTTGGAGTTTGCTCGATTCACAAGGGAACTAAGCCAAGGAAATAAAGATTTTTTTGCTGTTTTTTTTTGTAGATTTCCATCCATTTTCATCTATTTCTGCCATGTTTTTCCCCTTTTTTTCATTAAATGCACTATTTTTCTTATTTTCCAGTGATAATTCGAGTAGATTTTTGTCATTTTCCCGTTTTCCCTGTTATTTTTAATGCATAAATTTGTTTAAATTCGTCTTCACCCCCTTTTCAAGGGGTCTTTTCTCCAGGTCCCACCAGGTCCAGGTCACTTTTGATCCTTATTTTCTATCGAAAAAAAAAACTTTTTTTTATTGATTTTCTAGAAATTTAAAGCTATTCAATTTGAATTTTTTGTCGAAAAGTGCCTTGAAAACTTGAATTTTACTGATTTTTTTTTGAGATTTCTGCGATTTTTTTTTCTAGAAATTTCGTTATTTTTTGAGCATTTCAAGTCAAGAAAAAAACCGCTAAAAATCCATTTTCAGAGCCATATCTAGATGAAGCTGCGGAACGTGATTCAGCATGGGCTGAGAAGCTTTTCCAGCGGAAAAGTGGCATTTTCGAGGTAGGGAATTTTTCGAAAAACTTGACTAGACTTTGACCCGAAACATTGGAAATTTCGAAAAAAATGGTCGAAATTAGCCAATTTTTTGAAAATTTTGGCAATTTTCGAGCCTAAAAATTTTGAGAAACTGCTGAAAAATTCGAAAAATCGCCTA</canonical>
            <polymorphic>CCCCAGAAAGTGATCGCCGAGGCATTCAGAATTCTGAAGCCAGGAGGTCAACTGGCGATTCTCGAATTCTCGCAAGTCAACGCCGCGTTGAAGCCAATCTACGACGCCTACTCGTTCAATGTGATTCCGGTGCTTGGAGAGATACTAGCTAGCGATCGCCAGAGCTATCAATACCTCGTGGAATCGATTAGAAAGTTCCCGAACCAGGACGAATTCGCCAGAATTATCAGGGAGGAGGGATTCGAGAGAGTCACTTATGAGAATATGACTTTTGGAGTTTGCTCGATTCACAAGGGAACTAAGCCAAGGAAATAAAGATTTTTTTGCTGTTTTTTTTTGTAGATTTCCATCCATTTTCATCTATTTCTGCCATGTTTTTCCCCTTTTTTTCATTAAATGCACTATTTTTCTTATTTTCCAGTGATAATTCGAGTAGATTTTTGTCATTTTCCCGTTTTCCCTGTTATTTTTAATGCATAAATTTGTTTAAATTCGTCTTMACCCCCTTTTCAAGGGGTCTTTTCTCCAGGTCCCACCAGGTCCAGGTCACTTTTGATCCTTATTTTCTATCGAAAAAAAAAACTTTTTTTTATTGATTTTCTAGAAATTTAAAGCTATTCAATTTGAATTTTTTGTCGAAAAGTGCCTTGAAAACTTGAATTTTACTGATTTTTTTTTGAGATTTCTGCGATTTTTTTTTCTAGAAATTTCGTTATTTTTTGAGCATTTCAAGTCAAGAAAAAAACCGCTAAAAATCCATTTTCAGAGCCATATCTAGATGAAGCTGCGGAACGTGATTCAGCATGGGCTGAGAAGCTTTTCCAGCGGAAAAGTGGCATTTTCGAGGTAGGGAATTTTTCGAAAAACTTGACTAGACTTTGACCCGAAACATTGGAAATTTCGAAAAAAATGGTCGAAATTAGCCAATTTTTTGAAAATTTTGGCAATTTTCGAGCCTAAAAATTTTGAGAAACTGCTGAAAAATTCGAAAAATCGCCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>165 151 111 111 96 78 73 48 39 37 34 22 14 12 9</canonical_bands>
                <polymorphic_bands>165 151 112 111 111 96 73 48 39 37 22 14 12 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCCAGTGATAATTCGAGTAG</pcr_primer_p1>
		<pcr_primer_p2>AATTCAAGTTTTCAAGGCACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTCCAGTGATAATTCGAGTAGATTTTTGTCATTTTCCCGTTTTCCCTGTTATTTTTAATGCATAAATTTGTTTAAATTCGTCTTCACCCCCTTTTCAAGGGGTCTTTTCTCCAGGTCCCACCAGGTCCAGGTCACTTTTGATCCTTATTTTCTATCGAAAAAAAAAACTTTTTTTTATTGATTTTCTAGAAATTTAAAGCTATTCAATTTGAATTTTTTGTCGAAAAGTGCCTTGAAAACTTGAATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCCAGTGATAATTCGAGTAGATTTTTGTCATTTTCCCGTTTTCCCTGTTATTTTTAATGCATAAATTTGTTTAAATTCGTCTTMACCCCCTTTTCAAGGGGTCTTTTCTCCAGGTCCCACCAGGTCCAGGTCACTTTTGATCCTTATTTTCTATCGAAAAAAAAAACTTTTTTTTATTGATTTTCTAGAAATTTAAAGCTATTCAATTTGAATTTTTTGTCGAAAAGTGCCTTGAAAACTTGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29876</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>269858</contig_pos>
        <strand>+</strand>
        <context>TTTTCTATCG[A/T]AAAAAAAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTCCAGGTCCCACCAGGTCCAGGTCACTTTTGATCCTTATTTTCTATCG</left_flank>
        <right_flank>AAAAAAAAACTTTTTTTTATTGATTTTCTAGAAATTTAAAGCTATTCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTCAACGCCGCGTTGAAGCCAATCTACGACGCCTACTCGTTCAATGTGATTCCGGTGCTTGGAGAGATACTAGCTAGCGATCGCCAGAGCTATCAATACCTCGTGGAATCGATTAGAAAGTTCCCGAACCAGGACGAATTCGCCAGAATTATCAGGGAGGAGGGATTCGAGAGAGTCACTTATGAGAATATGACTTTTGGAGTTTGCTCGATTCACAAGGGAACTAAGCCAAGGAAATAAAGATTTTTTTGCTGTTTTTTTTTGTAGATTTCCATCCATTTTCATCTATTTCTGCCATGTTTTTCCCCTTTTTTTCATTAAATGCACTATTTTTCTTATTTTCCAGTGATAATTCGAGTAGATTTTTGTCATTTTCCCGTTTTCCCTGTTATTTTTAATGCATAAATTTGTTTAAATTCGTCTTCACCCCCTTTTCAAGGGGTCTTTTCTCCAGGTCCCACCAGGTCCAGGTCACTTTTGATCCTTATTTTCTATCGAAAAAAAAAACTTTTTTTTATTGATTTTCTAGAAATTTAAAGCTATTCAATTTGAATTTTTTGTCGAAAAGTGCCTTGAAAACTTGAATTTTACTGATTTTTTTTTGAGATTTCTGCGATTTTTTTTTCTAGAAATTTCGTTATTTTTTGAGCATTTCAAGTCAAGAAAAAAACCGCTAAAAATCCATTTTCAGAGCCATATCTAGATGAAGCTGCGGAACGTGATTCAGCATGGGCTGAGAAGCTTTTCCAGCGGAAAAGTGGCATTTTCGAGGTAGGGAATTTTTCGAAAAACTTGACTAGACTTTGACCCGAAACATTGGAAATTTCGAAAAAAATGGTCGAAATTAGCCAATTTTTTGAAAATTTTGGCAATTTTCGAGCCTAAAAATTTTGAGAAACTGCTGAAAAATTCGAAAAATCGCCTATAAAATTGAAAAAAAATCGCTTGAAACCTCGAAAAATTGCTTAAAATCCAAAAAAAATCGGGTAAAAACTCGA</canonical>
            <polymorphic>AAGTCAACGCCGCGTTGAAGCCAATCTACGACGCCTACTCGTTCAATGTGATTCCGGTGCTTGGAGAGATACTAGCTAGCGATCGCCAGAGCTATCAATACCTCGTGGAATCGATTAGAAAGTTCCCGAACCAGGACGAATTCGCCAGAATTATCAGGGAGGAGGGATTCGAGAGAGTCACTTATGAGAATATGACTTTTGGAGTTTGCTCGATTCACAAGGGAACTAAGCCAAGGAAATAAAGATTTTTTTGCTGTTTTTTTTTGTAGATTTCCATCCATTTTCATCTATTTCTGCCATGTTTTTCCCCTTTTTTTCATTAAATGCACTATTTTTCTTATTTTCCAGTGATAATTCGAGTAGATTTTTGTCATTTTCCCGTTTTCCCTGTTATTTTTAATGCATAAATTTGTTTAAATTCGTCTTCACCCCCTTTTCAAGGGGTCTTTTCTCCAGGTCCCACCAGGTCCAGGTCACTTTTGATCCTTATTTTCTATCGWAAAAAAAAACTTTTTTTTATTGATTTTCTAGAAATTTAAAGCTATTCAATTTGAATTTTTTGTCGAAAAGTGCCTTGAAAACTTGAATTTTACTGATTTTTTTTTGAGATTTCTGCGATTTTTTTTTCTAGAAATTTCGTTATTTTTTGAGCATTTCAAGTCAAGAAAAAAACCGCTAAAAATCCATTTTCAGAGCCATATCTAGATGAAGCTGCGGAACGTGATTCAGCATGGGCTGAGAAGCTTTTCCAGCGGAAAAGTGGCATTTTCGAGGTAGGGAATTTTTCGAAAAACTTGACTAGACTTTGACCCGAAACATTGGAAATTTCGAAAAAAATGGTCGAAATTAGCCAATTTTTTGAAAATTTTGGCAATTTTCGAGCCTAAAAATTTTGAGAAACTGCTGAAAAATTCGAAAAATCGCCTATAAAATTGAAAAAAAATCGCTTGAAACCTCGAAAAATTGCTTAAAATCCAAAAAAAATCGGGTAAAAACTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>206 146 141 112 66 58 43 42 41 41 37 35 17 13 2</canonical_bands>
                <polymorphic_bands>207 206 146 112 58 43 42 41 41 37 35 17 13 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCCAGTGATAATTCGAGTAG</pcr_primer_p1>
		<pcr_primer_p2>AATTCAAGTTTTCAAGGCACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTCCAGTGATAATTCGAGTAGATTTTTGTCATTTTCCCGTTTTCCCTGTTATTTTTAATGCATAAATTTGTTTAAATTCGTCTTCACCCCCTTTTCAAGGGGTCTTTTCTCCAGGTCCCACCAGGTCCAGGTCACTTTTGATCCTTATTTTCTATCGAAAAAAAAAACTTTTTTTTATTGATTTTCTAGAAATTTAAAGCTATTCAATTTGAATTTTTTGTCGAAAAGTGCCTTGAAAACTTGAATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCCAGTGATAATTCGAGTAGATTTTTGTCATTTTCCCGTTTTCCCTGTTATTTTTAATGCATAAATTTGTTTAAATTCGTCTTCACCCCCTTTTCAAGGGGTCTTTTCTCCAGGTCCCACCAGGTCCAGGTCACTTTTGATCCTTATTTTCTATCGWAAAAAAAAACTTTTTTTTATTGATTTTCTAGAAATTTAAAGCTATTCAATTTGAATTTTTTGTCGAAAAGTGCCTTGAAAACTTGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29877</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>279236</contig_pos>
        <strand>+</strand>
        <context>GTGATGGAGG[C/T]GCGAAGGTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAGGAACTGTGTGGCTTTCAAATTATAAAGGAGGAAGCGGTGATGGAGG</left_flank>
        <right_flank>GCGAAGGTGGTGGCGCGAAGGTGAGAGAGGGGTGGGTGCACCCTGCGCAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAGACTCATTTTATCATTTTTTATGAGTTTAGAATTCATTTTAGCACATTTAAACAGTTTTCGAAAAATTTAAAATTTCGCAAAGGGTTTAAAATTTCACCATGGCAAAAATTTTTTCAAAAACTTTTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGTAGAGAAACCTTAAAAATTGCGATTGACACTCAAACAATGCCAAAAAACTCCCATTAACCCTTTCAAAAACTCACTCCAAAAGTGAGAAATTAGTACTGAAATCACTTAAACAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACATCACAAGAAAGCCCGTATTTGAAACTATAAATGAGCAAATTTAGAAAAAATTCTGAGATGAAGGCTAAACATGGTTCCCTTGCTAGATTCAAAGGCAAAAGCACAACCACTGCGCCACGGTGTCACTAGAAGGAACTGTGTGGCTTTCAAATTATAAAGGAGGAAGCGGTGATGGAGGCGCGAAGGTGGTGGCGCGAAGGTGAGAGAGGGGTGGGTGCACCCTGCGCACCTGTGGTGTACTGGTTAGCAACTTGATCTACCAATCTCACGACCCGAGTTCGATTCCAAGTGCGGTCAAATCTTTTCTGGTTTTCCTGAGGACCCCGGTAACACATTTTAAATTACTGCAAACCCAACGAAACTATGTTTTTCAAATTTTCCATGTTCCCAGCTGCTATTTCGTACCTAAAATCTCATTAAAGTCGTAAAGAGCAAAAGTACAATACTCTCCTTCTCTCTCTCTCTCTCGAAGACTCTCTATCTCTCGACGACTCCATTACCATTGCTCATTGCAAATGACATCCAGGATAGGCTCCGCCCCTTTTCTTCTGCCCTGGGGCGAAAAAAGAAAAAAGTGTTTGCCATTCCTGACTAATAATTCATCCCTGAGGCTTAACCAATTTTTTTCTCTTCTTCTTCATCTCACCACAGAGAGAAAACTCACATAAATCAGATGGAA</canonical>
            <polymorphic>AAAAGACTCATTTTATCATTTTTTATGAGTTTAGAATTCATTTTAGCACATTTAAACAGTTTTCGAAAAATTTAAAATTTCGCAAAGGGTTTAAAATTTCACCATGGCAAAAATTTTTTCAAAAACTTTTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGTAGAGAAACCTTAAAAATTGCGATTGACACTCAAACAATGCCAAAAAACTCCCATTAACCCTTTCAAAAACTCACTCCAAAAGTGAGAAATTAGTACTGAAATCACTTAAACAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACATCACAAGAAAGCCCGTATTTGAAACTATAAATGAGCAAATTTAGAAAAAATTCTGAGATGAAGGCTAAACATGGTTCCCTTGCTAGATTCAAAGGCAAAAGCACAACCACTGCGCCACGGTGTCACTAGAAGGAACTGTGTGGCTTTCAAATTATAAAGGAGGAAGCGGTGATGGAGGYGCGAAGGTGGTGGCGCGAAGGTGAGAGAGGGGTGGGTGCACCCTGCGCACCTGTGGTGTACTGGTTAGCAACTTGATCTACCAATCTCACGACCCGAGTTCGATTCCAAGTGCGGTCAAATCTTTTCTGGTTTTCCTGAGGACCCCGGTAACACATTTTAAATTACTGCAAACCCAACGAAACTATGTTTTTCAAATTTTCCATGTTCCCAGCTGCTATTTCGTACCTAAAATCTCATTAAAGTCGTAAAGAGCAAAAGTACAATACTCTCCTTCTCTCTCTCTCTCTCGAAGACTCTCTATCTCTCGACGACTCCATTACCATTGCTCATTGCAAATGACATCCAGGATAGGCTCCGCCCCTTTTCTTCTGCCCTGGGGCGAAAAAAGAAAAAAGTGTTTGCCATTCCTGACTAATAATTCATCCCTGAGGCTTAACCAATTTTTTTCTCTTCTTCTTCATCTCACCACAGAGAGAAAACTCACATAAATCAGATGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 485 14</canonical_bands>
                <polymorphic_bands>515 485</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>453 435 66 32 14</canonical_bands>
                <polymorphic_bands>453 435 80 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTCACTAGAAGGAACTGTGTG</pcr_primer_p1>
		<pcr_primer_p2>ACATAGTTTCGTTGGGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGTCACTAGAAGGAACTGTGTGGCTTTCAAATTATAAAGGAGGAAGCGGTGATGGAGGCGCGAAGGTGGTGGCGCGAAGGTGAGAGAGGGGTGGGTGCACCCTGCGCACCTGTGGTGTACTGGTTAGCAACTTGATCTACCAATCTCACGACCCGAGTTCGATTCCAAGTGCGGTCAAATCTTTTCTGGTTTTCCTGAGGACCCCGGTAACACATTTTAAATTACTGCAAACCCAACGAAACTATGT</canonical_amplicon>
		<polymorphic_amplicon>TGTCACTAGAAGGAACTGTGTGGCTTTCAAATTATAAAGGAGGAAGCGGTGATGGAGGYGCGAAGGTGGTGGCGCGAAGGTGAGAGAGGGGTGGGTGCACCCTGCGCACCTGTGGTGTACTGGTTAGCAACTTGATCTACCAATCTCACGACCCGAGTTCGATTCCAAGTGCGGTCAAATCTTTTCTGGTTTTCCTGAGGACCCCGGTAACACATTTTAAATTACTGCAAACCCAACGAAACTATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29878</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>279588</contig_pos>
        <strand>+</strand>
        <context>ATCCAGGATA[A/G]GCTCCGCCCC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTCTCGACGACTCCATTACCATTGCTCATTGCAAATGACATCCAGGATA</left_flank>
        <right_flank>GCTCCGCCCCTTTTCTTCTGCCCTGGGGCGAAAAAAGAAAAAAGTGTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGCAAATTTAGAAAAAATTCTGAGATGAAGGCTAAACATGGTTCCCTTGCTAGATTCAAAGGCAAAAGCACAACCACTGCGCCACGGTGTCACTAGAAGGAACTGTGTGGCTTTCAAATTATAAAGGAGGAAGCGGTGATGGAGGCGCGAAGGTGGTGGCGCGAAGGTGAGAGAGGGGTGGGTGCACCCTGCGCACCTGTGGTGTACTGGTTAGCAACTTGATCTACCAATCTCACGACCCGAGTTCGATTCCAAGTGCGGTCAAATCTTTTCTGGTTTTCCTGAGGACCCCGGTAACACATTTTAAATTACTGCAAACCCAACGAAACTATGTTTTTCAAATTTTCCATGTTCCCAGCTGCTATTTCGTACCTAAAATCTCATTAAAGTCGTAAAGAGCAAAAGTACAATACTCTCCTTCTCTCTCTCTCTCTCGAAGACTCTCTATCTCTCGACGACTCCATTACCATTGCTCATTGCAAATGACATCCAGGATAGGCTCCGCCCCTTTTCTTCTGCCCTGGGGCGAAAAAAGAAAAAAGTGTTTGCCATTCCTGACTAATAATTCATCCCTGAGGCTTAACCAATTTTTTTCTCTTCTTCTTCATCTCACCACAGAGAGAAAACTCACATAAATCAGATGGAAGGTCAAAGACTTTTGGGGAGGAGCAGAGTGTGTTGGATGTTGAGAGAGATCATTCCCCAATCATTTTATCACCTTCTTTCTCTCTTTTTTCGCCGCCTTTTTATCATTTTATCACCTCTGTTTTCGCCGATTTTCTGGTTTTTCTCACCTAGCCTACTTTTTGATGGCCACTTTTTGTGTTGGGAGACTCTACACAAAAACCAAAAACAGTTTGAGCCACCTGGGGTTCGAACCCGGGTAGTGAGATTAGTAGACAGGGTTGTTAGCCAGTAAACCACGGTGGTACGGGCTACCTAGGTAGCGTTACCACCACCACCGCTCGCCACCGCGGCGCTCACCACTGAGGGCGCCG</canonical>
            <polymorphic>TGAGCAAATTTAGAAAAAATTCTGAGATGAAGGCTAAACATGGTTCCCTTGCTAGATTCAAAGGCAAAAGCACAACCACTGCGCCACGGTGTCACTAGAAGGAACTGTGTGGCTTTCAAATTATAAAGGAGGAAGCGGTGATGGAGGCGCGAAGGTGGTGGCGCGAAGGTGAGAGAGGGGTGGGTGCACCCTGCGCACCTGTGGTGTACTGGTTAGCAACTTGATCTACCAATCTCACGACCCGAGTTCGATTCCAAGTGCGGTCAAATCTTTTCTGGTTTTCCTGAGGACCCCGGTAACACATTTTAAATTACTGCAAACCCAACGAAACTATGTTTTTCAAATTTTCCATGTTCCCAGCTGCTATTTCGTACCTAAAATCTCATTAAAGTCGTAAAGAGCAAAAGTACAATACTCTCCTTCTCTCTCTCTCTCTCGAAGACTCTCTATCTCTCGACGACTCCATTACCATTGCTCATTGCAAATGACATCCAGGATARGCTCCGCCCCTTTTCTTCTGCCCTGGGGCGAAAAAAGAAAAAAGTGTTTGCCATTCCTGACTAATAATTCATCCCTGAGGCTTAACCAATTTTTTTCTCTTCTTCTTCATCTCACCACAGAGAGAAAACTCACATAAATCAGATGGAAGGTCAAAGACTTTTGGGGAGGAGCAGAGTGTGTTGGATGTTGAGAGAGATCATTCCCCAATCATTTTATCACCTTCTTTCTCTCTTTTTTCGCCGCCTTTTTATCATTTTATCACCTCTGTTTTCGCCGATTTTCTGGTTTTTCTCACCTAGCCTACTTTTTGATGGCCACTTTTTGTGTTGGGAGACTCTACACAAAAACCAAAAACAGTTTGAGCCACCTGGGGTTCGAACCCGGGTAGTGAGATTAGTAGACAGGGTTGTTAGCCAGTAAACCACGGTGGTACGGGCTACCTAGGTAGCGTTACCACCACCACCGCTCGCCACCGCGGCGCTCACCACTGAGGGCGCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>494 246 212 44 4</canonical_bands>
                <polymorphic_bands>706 246 44 4</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>248 220 141 79 79 63 50 49 33 23 15</canonical_bands>
                <polymorphic_bands>248 220 220 79 63 50 49 33 23 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTCGTAAAGAGCAAAAGTACAA</pcr_primer_p1>
		<pcr_primer_p2>TATGTGAGTTTTCTCTCTGTGGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGTCGTAAAGAGCAAAAGTACAATACTCTCCTTCTCTCTCTCTCTCTCGAAGACTCTCTATCTCTCGACGACTCCATTACCATTGCTCATTGCAAATGACATCCAGGATAGGCTCCGCCCCTTTTCTTCTGCCCTGGGGCGAAAAAAGAAAAAAGTGTTTGCCATTCCTGACTAATAATTCATCCCTGAGGCTTAACCAATTTTTTTCTCTTCTTCTTCATCTCACCACAGAGAGAAAACTCACATA</canonical_amplicon>
		<polymorphic_amplicon>AGTCGTAAAGAGCAAAAGTACAATACTCTCCTTCTCTCTCTCTCTCTCGAAGACTCTCTATCTCTCGACGACTCCATTACCATTGCTCATTGCAAATGACATCCAGGATARGCTCCGCCCCTTTTCTTCTGCCCTGGGGCGAAAAAAGAAAAAAGTGTTTGCCATTCCTGACTAATAATTCATCCCTGAGGCTTAACCAATTTTTTTCTCTTCTTCTTCATCTCACCACAGAGAGAAAACTCACATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29879</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>279869</contig_pos>
        <strand>+</strand>
        <context>TTCGCCGATT[A/T]TCTGGTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTTTTTTCGCCGCCTTTTTATCATTTTATCACCTCTGTTTTCGCCGATT</left_flank>
        <right_flank>TCTGGTTTTTCTCACCTAGCCTACTTTTTGATGGCCACTTTTTGTGTTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTGAGGACCCCGGTAACACATTTTAAATTACTGCAAACCCAACGAAACTATGTTTTTCAAATTTTCCATGTTCCCAGCTGCTATTTCGTACCTAAAATCTCATTAAAGTCGTAAAGAGCAAAAGTACAATACTCTCCTTCTCTCTCTCTCTCTCGAAGACTCTCTATCTCTCGACGACTCCATTACCATTGCTCATTGCAAATGACATCCAGGATAGGCTCCGCCCCTTTTCTTCTGCCCTGGGGCGAAAAAAGAAAAAAGTGTTTGCCATTCCTGACTAATAATTCATCCCTGAGGCTTAACCAATTTTTTTCTCTTCTTCTTCATCTCACCACAGAGAGAAAACTCACATAAATCAGATGGAAGGTCAAAGACTTTTGGGGAGGAGCAGAGTGTGTTGGATGTTGAGAGAGATCATTCCCCAATCATTTTATCACCTTCTTTCTCTCTTTTTTCGCCGCCTTTTTATCATTTTATCACCTCTGTTTTCGCCGATTTTCTGGTTTTTCTCACCTAGCCTACTTTTTGATGGCCACTTTTTGTGTTGGGAGACTCTACACAAAAACCAAAAACAGTTTGAGCCACCTGGGGTTCGAACCCGGGTAGTGAGATTAGTAGACAGGGTTGTTAGCCAGTAAACCACGGTGGTACGGGCTACCTAGGTAGCGTTACCACCACCACCGCTCGCCACCGCGGCGCTCACCACTGAGGGCGCCGCGTCACACCTTCCTATACGCCCTTTACCTCCACCACAACTTTGCGCCCTGTGGCTCACTGGTTACCGTTTTGTCTTTGAATCTAGAGGTCGCGGGTTCGAACCCAACTGGTGCCATTTTCTTTTTTATTGTTTTTTAGGATGAAAGAACAGGGTTTTTCGTGTTTTTTTGCTATTTACAACCAGTTGTTCCATCAATTCCCACTTGTCAAATGGAATGTTAGTAGGTGTTCTTTAGTTTTAGTAGTGTCGTTTGTTCGCAAGTGCTAAATTTTTCTCTAGT</canonical>
            <polymorphic>TCCTGAGGACCCCGGTAACACATTTTAAATTACTGCAAACCCAACGAAACTATGTTTTTCAAATTTTCCATGTTCCCAGCTGCTATTTCGTACCTAAAATCTCATTAAAGTCGTAAAGAGCAAAAGTACAATACTCTCCTTCTCTCTCTCTCTCTCGAAGACTCTCTATCTCTCGACGACTCCATTACCATTGCTCATTGCAAATGACATCCAGGATAGGCTCCGCCCCTTTTCTTCTGCCCTGGGGCGAAAAAAGAAAAAAGTGTTTGCCATTCCTGACTAATAATTCATCCCTGAGGCTTAACCAATTTTTTTCTCTTCTTCTTCATCTCACCACAGAGAGAAAACTCACATAAATCAGATGGAAGGTCAAAGACTTTTGGGGAGGAGCAGAGTGTGTTGGATGTTGAGAGAGATCATTCCCCAATCATTTTATCACCTTCTTTCTCTCTTTTTTCGCCGCCTTTTTATCATTTTATCACCTCTGTTTTCGCCGATTWTCTGGTTTTTCTCACCTAGCCTACTTTTTGATGGCCACTTTTTGTGTTGGGAGACTCTACACAAAAACCAAAAACAGTTTGAGCCACCTGGGGTTCGAACCCGGGTAGTGAGATTAGTAGACAGGGTTGTTAGCCAGTAAACCACGGTGGTACGGGCTACCTAGGTAGCGTTACCACCACCACCGCTCGCCACCGCGGCGCTCACCACTGAGGGCGCCGCGTCACACCTTCCTATACGCCCTTTACCTCCACCACAACTTTGCGCCCTGTGGCTCACTGGTTACCGTTTTGTCTTTGAATCTAGAGGTCGCGGGTTCGAACCCAACTGGTGCCATTTTCTTTTTTATTGTTTTTTAGGATGAAAGAACAGGGTTTTTCGTGTTTTTTTGCTATTTACAACCAGTTGTTCCATCAATTCCCACTTGTCAAATGGAATGTTAGTAGGTGTTCTTTAGTTTTAGTAGTGTCGTTTGTTCGCAAGTGCTAAATTTTTCTCTAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTCTTCTTCTTCATCTCA</pcr_primer_p1>
		<pcr_primer_p2>GTCTCCCAACACAAAAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTCTTCTTCTTCATCTCACCACAGAGAGAAAACTCACATAAATCAGATGGAAGGTCAAAGACTTTTGGGGAGGAGCAGAGTGTGTTGGATGTTGAGAGAGATCATTCCCCAATCATTTTATCACCTTCTTTCTCTCTTTTTTCGCCGCCTTTTTATCATTTTATCACCTCTGTTTTCGCCGATTTTCTGGTTTTTCTCACCTAGCCTACTTTTTGATGGCCACTTTTTGTGTTGGGAGAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTCTTCTTCTTCATCTCACCACAGAGAGAAAACTCACATAAATCAGATGGAAGGTCAAAGACTTTTGGGGAGGAGCAGAGTGTGTTGGATGTTGAGAGAGATCATTCCCCAATCATTTTATCACCTTCTTTCTCTCTTTTTTCGCCGCCTTTTTATCATTTTATCACCTCTGTTTTCGCCGATTWTCTGGTTTTTCTCACCTAGCCTACTTTTTGATGGCCACTTTTTGTGTTGGGAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29880</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>280200</contig_pos>
        <strand></strand>
        <context>cccaactggt[G/T]ccattttctt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTACCGTTTTGTCTTTGAATCTAGAGGTCGCGGGTTCGAACCCAACTGGT</left_flank>
        <right_flank>CCATTTTCTTTTTTATTGTTTTTTAGGATGAAAGAACAGGGTTTTTCGTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACCACAGAGAGAAAACTCACATAAATCAGATGGAAGGTCAAAGACTTTTGGGGAGGAGCAGAGTGTGTTGGATGTTGAGAGAGATCATTCCCCAATCATTTTATCACCTTCTTTCTCTCTTTTTTCGCCGCCTTTTTATCATTTTATCACCTCTGTTTTCGCCGATTTTCTGGTTTTTCTCACCTAGCCTACTTTTTGATGGCCACTTTTTGTGTTGGGAGACTCTACACAAAAACCAAAAACAGTTTGAGCCACCTGGGGTTCGAACCCGGGTAGTGAGATTAGTAGACAGGGTTGTTAGCCAGTAAACCACGGTGGTACGGGCTACCTAGGTAGCGTTACCACCACCACCGCTCGCCACCGCGGCGCTCACCACTGAGGGCGCCGCGTCACACCTTCCTATACGCCCTTTACCTCCACCACAACTTTGCGCCCTGTGGCTCACTGGTTACCGTTTTGTCTTTGAATCTAGAGGTCGCGGGTTCGAACCCAACTGGTGCCATTTTCTTTTTTATTGTTTTTTAGGATGAAAGAACAGGGTTTTTCGTGTTTTTTTGCTATTTACAACCAGTTGTTCCATCAATTCCCACTTGTCAAATGGAATGTTAGTAGGTGTTCTTTAGTTTTAGTAGTGTCGTTTGTTCGCAAGTGCTAAATTTTTCTCTAGTTTTTAGTTTTCTTCTAGAACCTAATTTCGTCTAGAGTAGAGCACATATTTTGCTCTTCTTCCTCTTTTTCTCATTGAAAATATGTTTCATTCCCCATTTTTCCGCCATGCTCTAATGATTTTCCTCCTCTCTTTTCTTTTCTAATGTTTCTGAGACTTCACATAAAGTTTAAATTGAAGGAAAAATCATTAAAAAGAAAAAAAAAGACTTTGGACGAGGGTGGGAGTTGAACCCTCGATGTGAGATTGGTGGGCAAAACTGTAAACCAGTAGGCTAACGCGCATACAGGAATATAGGCCCCGGTTGTCGTATACCACACACCGGGTTTCCT</canonical>
            <polymorphic>CACCACAGAGAGAAAACTCACATAAATCAGATGGAAGGTCAAAGACTTTTGGGGAGGAGCAGAGTGTGTTGGATGTTGAGAGAGATCATTCCCCAATCATTTTATCACCTTCTTTCTCTCTTTTTTCGCCGCCTTTTTATCATTTTATCACCTCTGTTTTCGCCGATTTTCTGGTTTTTCTCACCTAGCCTACTTTTTGATGGCCACTTTTTGTGTTGGGAGACTCTACACAAAAACCAAAAACAGTTTGAGCCACCTGGGGTTCGAACCCGGGTAGTGAGATTAGTAGACAGGGTTGTTAGCCAGTAAACCACGGTGGTACGGGCTACCTAGGTAGCGTTACCACCACCACCGCTCGCCACCGCGGCGCTCACCACTGAGGGCGCCGCGTCACACCTTCCTATACGCCCTTTACCTCCACCACAACTTTGCGCCCTGTGGCTCACTGGTTACCGTTTTGTCTTTGAATCTAGAGGTCGCGGGTTCGAACCCAACTGGTKCCATTTTCTTTTTTATTGTTTTTTAGGATGAAAGAACAGGGTTTTTCGTGTTTTTTTGCTATTTACAACCAGTTGTTCCATCAATTCCCACTTGTCAAATGGAATGTTAGTAGGTGTTCTTTAGTTTTAGTAGTGTCGTTTGTTCGCAAGTGCTAAATTTTTCTCTAGTTTTTAGTTTTCTTCTAGAACCTAATTTCGTCTAGAGTAGAGCACATATTTTGCTCTTCTTCCTCTTTTTCTCATTGAAAATATGTTTCATTCCCCATTTTTCCGCCATGCTCTAATGATTTTCCTCCTCTCTTTTCTTTTCTAATGTTTCTGAGACTTCACATAAAGTTTAAATTGAAGGAAAAATCATTAAAAAGAAAAAAAAAGACTTTGGACGAGGGTGGGAGTTGAACCCTCGATGTGAGATTGGTGGGCAAAACTGTAAACCAGTAGGCTAACGCGCATACAGGAATATAGGCCCCGGTTGTCGTATACCACACACCGGGTTTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>503 382 115</canonical_bands>
                <polymorphic_bands>618 382</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>117 65 62 60 55 50 46 43 40 39 34 33 27 26 25 25 24 23 20 19 17 17 17 15 15 12 11 10 9 9 5 5 3 3 3 3 3 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>117 105 65 62 60 46 43 40 39 34 33 27 26 25 25 24 23 20 19 17 17 17 15 15 12 11 10 9 9 5 5 3 3 3 3 3 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCCTATACGCCCTTTACC</pcr_primer_p1>
		<pcr_primer_p2>CGAACAAACGACACTACTAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCCTATACGCCCTTTACCTCCACCACAACTTTGCGCCCTGTGGCTCACTGGTTACCGTTTTGTCTTTGAATCTAGAGGTCGCGGGTTCGAACCCAACTGGTGCCATTTTCTTTTTTATTGTTTTTTAGGATGAAAGAACAGGGTTTTTCGTGTTTTTTTGCTATTTACAACCAGTTGTTCCATCAATTCCCACTTGTCAAATGGAATGTTAGTAGGTGTTCTTTAGTTTTAGTAGTGTCGTTTGTTCG</canonical_amplicon>
		<polymorphic_amplicon>CTTCCTATACGCCCTTTACCTCCACCACAACTTTGCGCCCTGTGGCTCACTGGTTACCGTTTTGTCTTTGAATCTAGAGGTCGCGGGTTCGAACCCAACTGGTKCCATTTTCTTTTTTATTGTTTTTTAGGATGAAAGAACAGGGTTTTTCGTGTTTTTTTGCTATTTACAACCAGTTGTTCCATCAATTCCCACTTGTCAAATGGAATGTTAGTAGGTGTTCTTTAGTTTTAGTAGTGTCGTTTGTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29881</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>280818</contig_pos>
        <strand>+</strand>
        <context>ACCCGGGTTC[C/G]ATTCCTAGGK</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTGTGGTGTACTGGTAACATCTCTGACTTCTAATCTAGCTACCCGGGTTC</left_flank>
        <right_flank>ATTCCTAGGTGCTTCAAATAGTTTTTTTTTATTTTTGCGAGGACACCTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTAGTTTTAGTAGTGTCGTTTGTTCGCAAGTGCTAAATTTTTCTCTAGTTTTTAGTTTTCTTCTAGAACCTAATTTCGTCTAGAGTAGAGCACATATTTTGCTCTTCTTCCTCTTTTTCTCATTGAAAATATGTTTCATTCCCCATTTTTCCGCCATGCTCTAATGATTTTCCTCCTCTCTTTTCTTTTCTAATGTTTCTGAGACTTCACATAAAGTTTAAATTGAAGGAAAAATCATTAAAAAGAAAAAAAAAGACTTTGGACGAGGGTGGGAGTTGAACCCTCGATGTGAGATTGGTGGGCAAAACTGTAAACCAGTAGGCTAACGCGCATACAGGAATATAGGCCCCGGTTGTCGTATACCACACACCGGGTTTCCTTTTCGTTTCCTGGGCGCCGCCGCGCCGCGGCGACAAGCCTGTCGGCGAGCTAGTCACGCCCGAACACCTGTGGTGTACTGGTAACATCTCTGACTTCTAATCTAGCTACCCGGGTTCGATTCCTAGGTGCTTCAAATAGTTTTTTTTTATTTTTGCGAGGACACCTGTACGCTGTTTGAAACACCCCGTTCTTTTCAAAATTCCAATTTTTTACGAACTGCAAAAGATAAAAAACCCAATTGCCAAATAATACCACAAAATTTATGGGCCTATTTGTGTCTGTGCCGACACACACTTGTTTTTTACTCTTTCTTCTTTCTTTTTTCTTGATTCTTTTTGTCTCTTTTTTCTCTCCAAGACTAGACCTCCCAACTATACAAAAGTAGGTAAAAGTGCTTGCTATTATTATTCATATAAAATTGCGAGGTACTACTAGTAGTACTAGGGAATAATTATAGGTGTCGGTGACACCATTTTGCAAGAAATTGTTTTTCGAAACGTCTAGTTTCTAGGTTCTAGGTACTTTCAATGGGTGTTCCGGGGTCTAAAATAAAAGCAAAAGAAAATAAAAGAGGTTGGGAGTCGAACCTGGGACCTGAGATTGGTAGTCAAACCTCT</canonical>
            <polymorphic>CTTTAGTTTTAGTAGTGTCGTTTGTTCGCAAGTGCTAAATTTTTCTCTAGTTTTTAGTTTTCTTCTAGAACCTAATTTCGTCTAGAGTAGAGCACATATTTTGCTCTTCTTCCTCTTTTTCTCATTGAAAATATGTTTCATTCCCCATTTTTCCGCCATGCTCTAATGATTTTCCTCCTCTCTTTTCTTTTCTAATGTTTCTGAGACTTCACATAAAGTTTAAATTGAAGGAAAAATCATTAAAAAGAAAAAAAAAGACTTTGGACGAGGGTGGGAGTTGAACCCTCGATGTGAGATTGGTGGGCAAAACTGTAAACCAGTAGGCTAACGCGCATACAGGAATATAGGCCCCGGTTGTCGTATACCACACACCGGGTTTCCTTTTCGTTTCCTGGGCGCCGCCGCGCCGCGGCGACAAGCCTGTCGGCGAGCTAGTCACGCCCGAACACCTGTGGTGTACTGGTAACATCTCTGACTTCTAATCTAGCTACCCGGGTTCSATTCCTAGGTGCTTCAAATAGTTTTTTTTTATTTTTGCGAGGACACCTGTACGCTGTTTGAAACACCCCGTTCTTTTCAAAATTCCAATTTTTTACGAACTGCAAAAGATAAAAAACCCAATTGCCAAATAATACCACAAAATTTATGGGCCTATTTGTGTCTGTGCCGACACACACTTGTTTTTTACTCTTTCTTCTTTCTTTTTTCTTGATTCTTTTTGTCTCTTTTTTCTCTCCAAGACTAGACCTCCCAACTATACAAAAGTAGGTAAAAGTGCTTGCTATTATTATTCATATAAAATTGCGAGGTACTACTAGTAGTACTAGGGAATAATTATAGGTGTCGGTGACACCATTTTGCAAGAAATTGTTTTTCGAAACGTCTAGTTTCTAGGTTCTAGGTACTTTCAATGGGTGTTCCGGGGTCTAAAATAAAAGCAAAAGAAAATAAAAGAGGTTGGGAGTCGAACCTGGGACCTGAGATTGGTAGTCAAACCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>377 287 212 90 34</canonical_bands>
                <polymorphic_bands>589 287 90 34</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>500 251 211 38</canonical_bands>
                <polymorphic_bands>711 251 38</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 289 211</canonical_bands>
                <polymorphic_bands>711 289</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTGTAAACCAGTAGGCTAACG</pcr_primer_p1>
		<pcr_primer_p2>GTTTCAAACAGCGTACAGGT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ACTGTAAACCAGTAGGCTAACGCGCATACAGGAATATAGGCCCCGGTTGTCGTATACCACACACCGGGTTTCCTTTTCGTTTCCTGGGCGCCGCCGCGCCGCGGCGACAAGCCTGTCGGCGAGCTAGTCACGCCCGAACACCTGTGGTGTACTGGTAACATCTCTGACTTCTAATCTAGCTACCCGGGTTCGATTCCTAGGTGCTTCAAATAGTTTTTTTTTATTTTTGCGAGGACACCTGTACGCTGTTTGAAAC</canonical_amplicon>
		<polymorphic_amplicon>ACTGTAAACCAGTAGGCTAACGCGCATACAGGAATATAGGCCCCGGTTGTCGTATACCACACACCGGGTTTCCTTTTCGTTTCCTGGGCGCCGCCGCGCCGCGGCGACAAGCCTGTCGGCGAGCTAGTCACGCCCGAACACCTGTGGTGTACTGGTAACATCTCTGACTTCTAATCTAGCTACCCGGGTTCSATTCCTAGGTGCTTCAAATAGTTTTTTTTTATTTTTGCGAGGACACCTGTACGCTGTTTGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29882</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>280828</contig_pos>
        <strand>+</strand>
        <context>SATTCCTAGG[G/T]GCTTCAAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTGGTAACATCTCTGACTTCTAATCTAGCTACCCGGGTTCGATTCCTAGG</left_flank>
        <right_flank>GCTTCAAATAGTTTTTTTTTATTTTTGCGAGGACACCTGTACGCTGTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTAGTGTCGTTTGTTCGCAAGTGCTAAATTTTTCTCTAGTTTTTAGTTTTCTTCTAGAACCTAATTTCGTCTAGAGTAGAGCACATATTTTGCTCTTCTTCCTCTTTTTCTCATTGAAAATATGTTTCATTCCCCATTTTTCCGCCATGCTCTAATGATTTTCCTCCTCTCTTTTCTTTTCTAATGTTTCTGAGACTTCACATAAAGTTTAAATTGAAGGAAAAATCATTAAAAAGAAAAAAAAAGACTTTGGACGAGGGTGGGAGTTGAACCCTCGATGTGAGATTGGTGGGCAAAACTGTAAACCAGTAGGCTAACGCGCATACAGGAATATAGGCCCCGGTTGTCGTATACCACACACCGGGTTTCCTTTTCGTTTCCTGGGCGCCGCCGCGCCGCGGCGACAAGCCTGTCGGCGAGCTAGTCACGCCCGAACACCTGTGGTGTACTGGTAACATCTCTGACTTCTAATCTAGCTACCCGGGTTCGATTCCTAGGTGCTTCAAATAGTTTTTTTTTATTTTTGCGAGGACACCTGTACGCTGTTTGAAACACCCCGTTCTTTTCAAAATTCCAATTTTTTACGAACTGCAAAAGATAAAAAACCCAATTGCCAAATAATACCACAAAATTTATGGGCCTATTTGTGTCTGTGCCGACACACACTTGTTTTTTACTCTTTCTTCTTTCTTTTTTCTTGATTCTTTTTGTCTCTTTTTTCTCTCCAAGACTAGACCTCCCAACTATACAAAAGTAGGTAAAAGTGCTTGCTATTATTATTCATATAAAATTGCGAGGTACTACTAGTAGTACTAGGGAATAATTATAGGTGTCGGTGACACCATTTTGCAAGAAATTGTTTTTCGAAACGTCTAGTTTCTAGGTTCTAGGTACTTTCAATGGGTGTTCCGGGGTCTAAAATAAAAGCAAAAGAAAATAAAAGAGGTTGGGAGTCGAACCTGGGACCTGAGATTGGTAGTCAAACCTCTACGCCAATAG</canonical>
            <polymorphic>AGTAGTGTCGTTTGTTCGCAAGTGCTAAATTTTTCTCTAGTTTTTAGTTTTCTTCTAGAACCTAATTTCGTCTAGAGTAGAGCACATATTTTGCTCTTCTTCCTCTTTTTCTCATTGAAAATATGTTTCATTCCCCATTTTTCCGCCATGCTCTAATGATTTTCCTCCTCTCTTTTCTTTTCTAATGTTTCTGAGACTTCACATAAAGTTTAAATTGAAGGAAAAATCATTAAAAAGAAAAAAAAAGACTTTGGACGAGGGTGGGAGTTGAACCCTCGATGTGAGATTGGTGGGCAAAACTGTAAACCAGTAGGCTAACGCGCATACAGGAATATAGGCCCCGGTTGTCGTATACCACACACCGGGTTTCCTTTTCGTTTCCTGGGCGCCGCCGCGCCGCGGCGACAAGCCTGTCGGCGAGCTAGTCACGCCCGAACACCTGTGGTGTACTGGTAACATCTCTGACTTCTAATCTAGCTACCCGGGTTCGATTCCTAGGKGCTTCAAATAGTTTTTTTTTATTTTTGCGAGGACACCTGTACGCTGTTTGAAACACCCCGTTCTTTTCAAAATTCCAATTTTTTACGAACTGCAAAAGATAAAAAACCCAATTGCCAAATAATACCACAAAATTTATGGGCCTATTTGTGTCTGTGCCGACACACACTTGTTTTTTACTCTTTCTTCTTTCTTTTTTCTTGATTCTTTTTGTCTCTTTTTTCTCTCCAAGACTAGACCTCCCAACTATACAAAAGTAGGTAAAAGTGCTTGCTATTATTATTCATATAAAATTGCGAGGTACTACTAGTAGTACTAGGGAATAATTATAGGTGTCGGTGACACCATTTTGCAAGAAATTGTTTTTCGAAACGTCTAGTTTCTAGGTTCTAGGTACTTTCAATGGGTGTTCCGGGGTCTAAAATAAAAGCAAAAGAAAATAAAAGAGGTTGGGAGTCGAACCTGGGACCTGAGATTGGTAGTCAAACCTCTACGCCAATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>117 101 93 72 67 66 65 65 62 60 54 34 23 20 20 17 10 9 7 6 6 6 6 3 3 2 2 2 2</canonical_bands>
                <polymorphic_bands>117 101 93 88 72 67 66 65 65 62 60 23 20 20 17 10 9 7 6 6 6 6 3 3 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTGTAAACCAGTAGGCTAACG</pcr_primer_p1>
		<pcr_primer_p2>GTTTCAAACAGCGTACAGGT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ACTGTAAACCAGTAGGCTAACGCGCATACAGGAATATAGGCCCCGGTTGTCGTATACCACACACCGGGTTTCCTTTTCGTTTCCTGGGCGCCGCCGCGCCGCGGCGACAAGCCTGTCGGCGAGCTAGTCACGCCCGAACACCTGTGGTGTACTGGTAACATCTCTGACTTCTAATCTAGCTACCCGGGTTCGATTCCTAGGTGCTTCAAATAGTTTTTTTTTATTTTTGCGAGGACACCTGTACGCTGTTTGAAAC</canonical_amplicon>
		<polymorphic_amplicon>ACTGTAAACCAGTAGGCTAACGCGCATACAGGAATATAGGCCCCGGTTGTCGTATACCACACACCGGGTTTCCTTTTCGTTTCCTGGGCGCCGCCGCGCCGCGGCGACAAGCCTGTCGGCGAGCTAGTCACGCCCGAACACCTGTGGTGTACTGGTAACATCTCTGACTTCTAATCTAGCTACCCGGGTTCGATTCCTAGGKGCTTCAAATAGTTTTTTTTTATTTTTGCGAGGACACCTGTACGCTGTTTGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29883</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>284070</contig_pos>
        <strand></strand>
        <context>gccctacctt[A/T]aaaggcayat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTT</left_flank>
        <right_flank>AAAGGCATATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACATTTTTGTTGTAGATGACTTTTTGACAGCTAACTTACTTTTAGAGAGATGTGCCTTTCAAGATTGCGCACCCTTTGTCGACTTCCTGATAGTCAGGAGAAAGCAGCAAGGGGTGCGCGATCTTTAAAGGCGCATAGCTCTAGAACCAAAATAACTAGATAAAAATTGTCAACTAAGAAAATTTGTATAGTTTTGTGTTCTACATTTTTGTAGTGAACAACTTTTTTGTTGGTGCCTTCGTTTTTGAGATACGAGCCTTTAAAGGTGGGGGGACATGAGAAAAATAATGTTGTCGAAATCCCGTTTAAATATGCTCCTCAAGGTGTTGAACTTGTGAGGGCGATGATTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGTAGAATGCATACTCTGGCCCCAAAAATCCCCCGTAAAATCTCCTTTCCCCCCACCTTTAAAGAAAGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTAAAAGGCATATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATGTGAAAAATTTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTGTATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCACAGGCGAGTAGAGGAACTTTAAAGGCGCATAACTCGAGAACCAGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATGCTCTACAATTTTATAATTATAAAAACCGTTAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTATCAAAGGAAATCGAGAACGTGGAGACGCAGACTCGAATCTGGCTCAATGAGCTGCACGATGTGCATGACAAACGAGTGGATATTGATGTAATTTTAAATTTCATTTGCAGTAATTTCGCTCTATTGAGAATTTCCAGTGCCAAATGATTCGTCTGGGCTCGGAGGTCAAGAAGAACGAGACC</canonical>
            <polymorphic>TACATTTTTGTTGTAGATGACTTTTTGACAGCTAACTTACTTTTAGAGAGATGTGCCTTTCAAGATTGCGCACCCTTTGTCGACTTCCTGATAGTCAGGAGAAAGCAGCAAGGGGTGCGCGATCTTTAAAGGCGCATAGCTCTAGAACCAAAATAACTAGATAAAAATTGTCAACTAAGAAAATTTGTATAGTTTTGTGTTCTACATTTTTGTAGTGAACAACTTTTTTGTTGGTGCCTTCGTTTTTGAGATACGAGCCTTTAAAGGTGGGGGGACATGAGAAAAATAATGTTGTCGAAATCCCGTTTAAATATGCTCCTCAAGGTGTTGAACTTGTGAGGGCGATGATTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGTAGAATGCATACTCTGGCCCCAAAAATCCCCCGTAAAATCTCCTTTCCCCCCACCTTTAAAGAAAGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTWAAAGGCATATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATGTGAAAAATTTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTGTATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCACAGGCGAGTAGAGGAACTTTAAAGGCGCATAACTCGAGAACCAGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATGCTCTACAATTTTATAATTATAAAAACCGTTAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTATCAAAGGAAATCGAGAACGTGGAGACGCAGACTCGAATCTGGCTCAATGAGCTGCACGATGTGCATGACAAACGAGTGGATATTGATGTAATTTTAAATTTCATTTGCAGTAATTTCGCTCTATTGAGAATTTCCAGTGCCAAATGATTCGTCTGGGCTCGGAGGTCAAGAAGAACGAGACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>138 136 135 135 126 102 88 56 46 38</canonical_bands>
                <polymorphic_bands>192 138 135 135 126 102 88 46 38</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCCACCTTTAAAGAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATAACTTTTCAAGCTCCTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>386</pcr_amplicon_size>
		<canonical_amplicon>CCCCACCTTTAAAGAAAGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTAAAAGGCATATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATGTGAAAAATTTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTGTATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCACAGGCGAGTAGAGGAACTTTAAAGGCGCATAACTCGAGAACCAGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATGCTCTACAATTTTATAATTATAAAAACCGTTAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTAT</canonical_amplicon>
		<polymorphic_amplicon>CCCCACCTTTAAAGAAAGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTWAAAGGCATATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATGTGAAAAATTTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTGTATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCACAGGCGAGTAGAGGAACTTTAAAGGCGCATAACTCGAGAACCAGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATGCTCTACAATTTTATAATTATAAAAACCGTTAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29884</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>284078</contig_pos>
        <strand></strand>
        <context>ttwaaaggca[T/C]atagctcaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTAAAAGGCA</left_flank>
        <right_flank>ATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTGTAGATGACTTTTTGACAGCTAACTTACTTTTAGAGAGATGTGCCTTTCAAGATTGCGCACCCTTTGTCGACTTCCTGATAGTCAGGAGAAAGCAGCAAGGGGTGCGCGATCTTTAAAGGCGCATAGCTCTAGAACCAAAATAACTAGATAAAAATTGTCAACTAAGAAAATTTGTATAGTTTTGTGTTCTACATTTTTGTAGTGAACAACTTTTTTGTTGGTGCCTTCGTTTTTGAGATACGAGCCTTTAAAGGTGGGGGGACATGAGAAAAATAATGTTGTCGAAATCCCGTTTAAATATGCTCCTCAAGGTGTTGAACTTGTGAGGGCGATGATTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGTAGAATGCATACTCTGGCCCCAAAAATCCCCCGTAAAATCTCCTTTCCCCCCACCTTTAAAGAAAGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTAAAAGGCATATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATGTGAAAAATTTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTGTATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCACAGGCGAGTAGAGGAACTTTAAAGGCGCATAACTCGAGAACCAGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATGCTCTACAATTTTATAATTATAAAAACCGTTAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTATCAAAGGAAATCGAGAACGTGGAGACGCAGACTCGAATCTGGCTCAATGAGCTGCACGATGTGCATGACAAACGAGTGGATATTGATGTAATTTTAAATTTCATTTGCAGTAATTTCGCTCTATTGAGAATTTCCAGTGCCAAATGATTCGTCTGGGCTCGGAGGTCAAGAAGAACGAGACCTACGTTCA</canonical>
            <polymorphic>TGTTGTAGATGACTTTTTGACAGCTAACTTACTTTTAGAGAGATGTGCCTTTCAAGATTGCGCACCCTTTGTCGACTTCCTGATAGTCAGGAGAAAGCAGCAAGGGGTGCGCGATCTTTAAAGGCGCATAGCTCTAGAACCAAAATAACTAGATAAAAATTGTCAACTAAGAAAATTTGTATAGTTTTGTGTTCTACATTTTTGTAGTGAACAACTTTTTTGTTGGTGCCTTCGTTTTTGAGATACGAGCCTTTAAAGGTGGGGGGACATGAGAAAAATAATGTTGTCGAAATCCCGTTTAAATATGCTCCTCAAGGTGTTGAACTTGTGAGGGCGATGATTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGTAGAATGCATACTCTGGCCCCAAAAATCCCCCGTAAAATCTCCTTTCCCCCCACCTTTAAAGAAAGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTAAAAGGCAYATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATGTGAAAAATTTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTGTATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCACAGGCGAGTAGAGGAACTTTAAAGGCGCATAACTCGAGAACCAGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATGCTCTACAATTTTATAATTATAAAAACCGTTAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTATCAAAGGAAATCGAGAACGTGGAGACGCAGACTCGAATCTGGCTCAATGAGCTGCACGATGTGCATGACAAACGAGTGGATATTGATGTAATTTTAAATTTCATTTGCAGTAATTTCGCTCTATTGAGAATTTCCAGTGCCAAATGATTCGTCTGGGCTCGGAGGTCAAGAAGAACGAGACCTACGTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCCACCTTTAAAGAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATAACTTTTCAAGCTCCTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>386</pcr_amplicon_size>
		<canonical_amplicon>CCCCACCTTTAAAGAAAGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTAAAAGGCATATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATGTGAAAAATTTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTGTATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCACAGGCGAGTAGAGGAACTTTAAAGGCGCATAACTCGAGAACCAGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATGCTCTACAATTTTATAATTATAAAAACCGTTAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTAT</canonical_amplicon>
		<polymorphic_amplicon>CCCCACCTTTAAAGAAAGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTAAAAGGCAYATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATGTGAAAAATTTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTGTATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCACAGGCGAGTAGAGGAACTTTAAAGGCGCATAACTCGAGAACCAGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATGCTCTACAATTTTATAATTATAAAAACCGTTAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29885</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>284115</contig_pos>
        <strand></strand>
        <context>agaaagttgc[A/G]aacaaataaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCTTAAAAGGCATATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGC</left_flank>
        <right_flank>AACAAATAAAATGTGAAAAATTTTATGCTCTACATTTTTGTAGTTGACAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAGATGTGCCTTTCAAGATTGCGCACCCTTTGTCGACTTCCTGATAGTCAGGAGAAAGCAGCAAGGGGTGCGCGATCTTTAAAGGCGCATAGCTCTAGAACCAAAATAACTAGATAAAAATTGTCAACTAAGAAAATTTGTATAGTTTTGTGTTCTACATTTTTGTAGTGAACAACTTTTTTGTTGGTGCCTTCGTTTTTGAGATACGAGCCTTTAAAGGTGGGGGGACATGAGAAAAATAATGTTGTCGAAATCCCGTTTAAATATGCTCCTCAAGGTGTTGAACTTGTGAGGGCGATGATTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGTAGAATGCATACTCTGGCCCCAAAAATCCCCCGTAAAATCTCCTTTCCCCCCACCTTTAAAGAAAGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTAAAAGGCATATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATGTGAAAAATTTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTGTATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCACAGGCGAGTAGAGGAACTTTAAAGGCGCATAACTCGAGAACCAGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATGCTCTACAATTTTATAATTATAAAAACCGTTAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTATCAAAGGAAATCGAGAACGTGGAGACGCAGACTCGAATCTGGCTCAATGAGCTGCACGATGTGCATGACAAACGAGTGGATATTGATGTAATTTTAAATTTCATTTGCAGTAATTTCGCTCTATTGAGAATTTCCAGTGCCAAATGATTCGTCTGGGCTCGGAGGTCAAGAAGAACGAGACCTACGTTCAGTTAGCATGCATTGATATCGAGAGAATGGAGATTCGT</canonical>
            <polymorphic>GAGAGATGTGCCTTTCAAGATTGCGCACCCTTTGTCGACTTCCTGATAGTCAGGAGAAAGCAGCAAGGGGTGCGCGATCTTTAAAGGCGCATAGCTCTAGAACCAAAATAACTAGATAAAAATTGTCAACTAAGAAAATTTGTATAGTTTTGTGTTCTACATTTTTGTAGTGAACAACTTTTTTGTTGGTGCCTTCGTTTTTGAGATACGAGCCTTTAAAGGTGGGGGGACATGAGAAAAATAATGTTGTCGAAATCCCGTTTAAATATGCTCCTCAAGGTGTTGAACTTGTGAGGGCGATGATTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGTAGAATGCATACTCTGGCCCCAAAAATCCCCCGTAAAATCTCCTTTCCCCCCACCTTTAAAGAAAGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTAAAAGGCATATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCRAACAAATAAAATGTGAAAAATTTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTGTATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCACAGGCGAGTAGAGGAACTTTAAAGGCGCATAACTCGAGAACCAGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATGCTCTACAATTTTATAATTATAAAAACCGTTAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTATCAAAGGAAATCGAGAACGTGGAGACGCAGACTCGAATCTGGCTCAATGAGCTGCACGATGTGCATGACAAACGAGTGGATATTGATGTAATTTTAAATTTCATTTGCAGTAATTTCGCTCTATTGAGAATTTCCAGTGCCAAATGATTCGTCTGGGCTCGGAGGTCAAGAAGAACGAGACCTACGTTCAGTTAGCATGCATTGATATCGAGAGAATGGAGATTCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>347 329 92 80 71 44 28 9</canonical_bands>
                <polymorphic_bands>409 347 92 71 44 28 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCCACCTTTAAAGAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATAACTTTTCAAGCTCCTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>386</pcr_amplicon_size>
		<canonical_amplicon>CCCCACCTTTAAAGAAAGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTAAAAGGCATATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATGTGAAAAATTTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTGTATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCACAGGCGAGTAGAGGAACTTTAAAGGCGCATAACTCGAGAACCAGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATGCTCTACAATTTTATAATTATAAAAACCGTTAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTAT</canonical_amplicon>
		<polymorphic_amplicon>CCCCACCTTTAAAGAAAGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTAAAAGGCATATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCRAACAAATAAAATGTGAAAAATTTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTGTATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCACAGGCGAGTAGAGGAACTTTAAAGGCGCATAACTCGAGAACCAGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATGCTCTACAATTTTATAATTATAAAAACCGTTAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29886</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>284131</contig_pos>
        <strand></strand>
        <context>ataaaatgtg[A/C]aaaatkttat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATGTG</left_flank>
        <right_flank>AAAATTTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTGTATATTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGATTGCGCACCCTTTGTCGACTTCCTGATAGTCAGGAGAAAGCAGCAAGGGGTGCGCGATCTTTAAAGGCGCATAGCTCTAGAACCAAAATAACTAGATAAAAATTGTCAACTAAGAAAATTTGTATAGTTTTGTGTTCTACATTTTTGTAGTGAACAACTTTTTTGTTGGTGCCTTCGTTTTTGAGATACGAGCCTTTAAAGGTGGGGGGACATGAGAAAAATAATGTTGTCGAAATCCCGTTTAAATATGCTCCTCAAGGTGTTGAACTTGTGAGGGCGATGATTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGTAGAATGCATACTCTGGCCCCAAAAATCCCCCGTAAAATCTCCTTTCCCCCCACCTTTAAAGAAAGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTAAAAGGCATATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATGTGAAAAATTTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTGTATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCACAGGCGAGTAGAGGAACTTTAAAGGCGCATAACTCGAGAACCAGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATGCTCTACAATTTTATAATTATAAAAACCGTTAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTATCAAAGGAAATCGAGAACGTGGAGACGCAGACTCGAATCTGGCTCAATGAGCTGCACGATGTGCATGACAAACGAGTGGATATTGATGTAATTTTAAATTTCATTTGCAGTAATTTCGCTCTATTGAGAATTTCCAGTGCCAAATGATTCGTCTGGGCTCGGAGGTCAAGAAGAACGAGACCTACGTTCAGTTAGCATGCATTGATATCGAGAGAATGGAGATTCGTCATGAAATAAGGTAAA</canonical>
            <polymorphic>AAGATTGCGCACCCTTTGTCGACTTCCTGATAGTCAGGAGAAAGCAGCAAGGGGTGCGCGATCTTTAAAGGCGCATAGCTCTAGAACCAAAATAACTAGATAAAAATTGTCAACTAAGAAAATTTGTATAGTTTTGTGTTCTACATTTTTGTAGTGAACAACTTTTTTGTTGGTGCCTTCGTTTTTGAGATACGAGCCTTTAAAGGTGGGGGGACATGAGAAAAATAATGTTGTCGAAATCCCGTTTAAATATGCTCCTCAAGGTGTTGAACTTGTGAGGGCGATGATTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGTAGAATGCATACTCTGGCCCCAAAAATCCCCCGTAAAATCTCCTTTCCCCCCACCTTTAAAGAAAGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTAAAAGGCATATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATGTGMAAAATTTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTGTATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCACAGGCGAGTAGAGGAACTTTAAAGGCGCATAACTCGAGAACCAGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATGCTCTACAATTTTATAATTATAAAAACCGTTAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTATCAAAGGAAATCGAGAACGTGGAGACGCAGACTCGAATCTGGCTCAATGAGCTGCACGATGTGCATGACAAACGAGTGGATATTGATGTAATTTTAAATTTCATTTGCAGTAATTTCGCTCTATTGAGAATTTCCAGTGCCAAATGATTCGTCTGGGCTCGGAGGTCAAGAAGAACGAGACCTACGTTCAGTTAGCATGCATTGATATCGAGAGAATGGAGATTCGTCATGAAATAAGGTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCCACCTTTAAAGAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATAACTTTTCAAGCTCCTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>386</pcr_amplicon_size>
		<canonical_amplicon>CCCCACCTTTAAAGAAAGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTAAAAGGCATATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATGTGAAAAATTTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTGTATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCACAGGCGAGTAGAGGAACTTTAAAGGCGCATAACTCGAGAACCAGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATGCTCTACAATTTTATAATTATAAAAACCGTTAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTAT</canonical_amplicon>
		<polymorphic_amplicon>CCCCACCTTTAAAGAAAGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTAAAAGGCATATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATGTGMAAAATTTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTGTATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCACAGGCGAGTAGAGGAACTTTAAAGGCGCATAACTCGAGAACCAGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATGCTCTACAATTTTATAATTATAAAAACCGTTAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29887</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>284137</contig_pos>
        <strand></strand>
        <context>tgtgmaaaat[T/G]ttatgctcta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATGTGAAAAAT</left_flank>
        <right_flank>TTATGCTCTACATTTTTGTAGTTGACAACTTTTTTGTATATTTTTTGGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGCACCCTTTGTCGACTTCCTGATAGTCAGGAGAAAGCAGCAAGGGGTGCGCGATCTTTAAAGGCGCATAGCTCTAGAACCAAAATAACTAGATAAAAATTGTCAACTAAGAAAATTTGTATAGTTTTGTGTTCTACATTTTTGTAGTGAACAACTTTTTTGTTGGTGCCTTCGTTTTTGAGATACGAGCCTTTAAAGGTGGGGGGACATGAGAAAAATAATGTTGTCGAAATCCCGTTTAAATATGCTCCTCAAGGTGTTGAACTTGTGAGGGCGATGATTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGTAGAATGCATACTCTGGCCCCAAAAATCCCCCGTAAAATCTCCTTTCCCCCCACCTTTAAAGAAAGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTAAAAGGCATATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATGTGAAAAATTTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTGTATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCACAGGCGAGTAGAGGAACTTTAAAGGCGCATAACTCGAGAACCAGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATGCTCTACAATTTTATAATTATAAAAACCGTTAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTATCAAAGGAAATCGAGAACGTGGAGACGCAGACTCGAATCTGGCTCAATGAGCTGCACGATGTGCATGACAAACGAGTGGATATTGATGTAATTTTAAATTTCATTTGCAGTAATTTCGCTCTATTGAGAATTTCCAGTGCCAAATGATTCGTCTGGGCTCGGAGGTCAAGAAGAACGAGACCTACGTTCAGTTAGCATGCATTGATATCGAGAGAATGGAGATTCGTCATGAAATAAGGTAAATTTACA</canonical>
            <polymorphic>GCGCACCCTTTGTCGACTTCCTGATAGTCAGGAGAAAGCAGCAAGGGGTGCGCGATCTTTAAAGGCGCATAGCTCTAGAACCAAAATAACTAGATAAAAATTGTCAACTAAGAAAATTTGTATAGTTTTGTGTTCTACATTTTTGTAGTGAACAACTTTTTTGTTGGTGCCTTCGTTTTTGAGATACGAGCCTTTAAAGGTGGGGGGACATGAGAAAAATAATGTTGTCGAAATCCCGTTTAAATATGCTCCTCAAGGTGTTGAACTTGTGAGGGCGATGATTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGTAGAATGCATACTCTGGCCCCAAAAATCCCCCGTAAAATCTCCTTTCCCCCCACCTTTAAAGAAAGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTAAAAGGCATATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATGTGAAAAATKTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTGTATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCACAGGCGAGTAGAGGAACTTTAAAGGCGCATAACTCGAGAACCAGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATGCTCTACAATTTTATAATTATAAAAACCGTTAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTATCAAAGGAAATCGAGAACGTGGAGACGCAGACTCGAATCTGGCTCAATGAGCTGCACGATGTGCATGACAAACGAGTGGATATTGATGTAATTTTAAATTTCATTTGCAGTAATTTCGCTCTATTGAGAATTTCCAGTGCCAAATGATTCGTCTGGGCTCGGAGGTCAAGAAGAACGAGACCTACGTTCAGTTAGCATGCATTGATATCGAGAGAATGGAGATTCGTCATGAAATAAGGTAAATTTACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>382 351 114 113 32 8</canonical_bands>
                <polymorphic_bands>733 114 113 32 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>382 148 124 113 98 25 24 17 16 15 15 8 8 7</canonical_bands>
                <polymorphic_bands>530 124 113 98 25 24 17 16 15 15 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCCACCTTTAAAGAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATAACTTTTCAAGCTCCTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>386</pcr_amplicon_size>
		<canonical_amplicon>CCCCACCTTTAAAGAAAGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTAAAAGGCATATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATGTGAAAAATTTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTGTATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCACAGGCGAGTAGAGGAACTTTAAAGGCGCATAACTCGAGAACCAGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATGCTCTACAATTTTATAATTATAAAAACCGTTAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTAT</canonical_amplicon>
		<polymorphic_amplicon>CCCCACCTTTAAAGAAAGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTAAAAGGCATATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATGTGAAAAATKTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTGTATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCACAGGCGAGTAGAGGAACTTTAAAGGCGCATAACTCGAGAACCAGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATGCTCTACAATTTTATAATTATAAAAACCGTTAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29888</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>284173</contig_pos>
        <strand></strand>
        <context>caactttttt[G/A]tatatttttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAATGTGAAAAATTTTATGCTCTACATTTTTGTAGTTGACAACTTTTTT</left_flank>
        <right_flank>TATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCAGCAAGGGGTGCGCGATCTTTAAAGGCGCATAGCTCTAGAACCAAAATAACTAGATAAAAATTGTCAACTAAGAAAATTTGTATAGTTTTGTGTTCTACATTTTTGTAGTGAACAACTTTTTTGTTGGTGCCTTCGTTTTTGAGATACGAGCCTTTAAAGGTGGGGGGACATGAGAAAAATAATGTTGTCGAAATCCCGTTTAAATATGCTCCTCAAGGTGTTGAACTTGTGAGGGCGATGATTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGTAGAATGCATACTCTGGCCCCAAAAATCCCCCGTAAAATCTCCTTTCCCCCCACCTTTAAAGAAAGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTAAAAGGCATATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATGTGAAAAATTTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTGTATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCACAGGCGAGTAGAGGAACTTTAAAGGCGCATAACTCGAGAACCAGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATGCTCTACAATTTTATAATTATAAAAACCGTTAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTATCAAAGGAAATCGAGAACGTGGAGACGCAGACTCGAATCTGGCTCAATGAGCTGCACGATGTGCATGACAAACGAGTGGATATTGATGTAATTTTAAATTTCATTTGCAGTAATTTCGCTCTATTGAGAATTTCCAGTGCCAAATGATTCGTCTGGGCTCGGAGGTCAAGAAGAACGAGACCTACGTTCAGTTAGCATGCATTGATATCGAGAGAATGGAGATTCGTCATGAAATAAGGTAAATTTACAAACTGTGGCTTTTAGATTTAGTCCCTATTTTTTGCT</canonical>
            <polymorphic>AGCAGCAAGGGGTGCGCGATCTTTAAAGGCGCATAGCTCTAGAACCAAAATAACTAGATAAAAATTGTCAACTAAGAAAATTTGTATAGTTTTGTGTTCTACATTTTTGTAGTGAACAACTTTTTTGTTGGTGCCTTCGTTTTTGAGATACGAGCCTTTAAAGGTGGGGGGACATGAGAAAAATAATGTTGTCGAAATCCCGTTTAAATATGCTCCTCAAGGTGTTGAACTTGTGAGGGCGATGATTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGTAGAATGCATACTCTGGCCCCAAAAATCCCCCGTAAAATCTCCTTTCCCCCCACCTTTAAAGAAAGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTAAAAGGCATATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATGTGAAAAATTTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTRTATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCACAGGCGAGTAGAGGAACTTTAAAGGCGCATAACTCGAGAACCAGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATGCTCTACAATTTTATAATTATAAAAACCGTTAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTATCAAAGGAAATCGAGAACGTGGAGACGCAGACTCGAATCTGGCTCAATGAGCTGCACGATGTGCATGACAAACGAGTGGATATTGATGTAATTTTAAATTTCATTTGCAGTAATTTCGCTCTATTGAGAATTTCCAGTGCCAAATGATTCGTCTGGGCTCGGAGGTCAAGAAGAACGAGACCTACGTTCAGTTAGCATGCATTGATATCGAGAGAATGGAGATTCGTCATGAAATAAGGTAAATTTACAAACTGTGGCTTTTAGATTTAGTCCCTATTTTTTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCCACCTTTAAAGAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATAACTTTTCAAGCTCCTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>386</pcr_amplicon_size>
		<canonical_amplicon>CCCCACCTTTAAAGAAAGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTAAAAGGCATATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATGTGAAAAATTTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTGTATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCACAGGCGAGTAGAGGAACTTTAAAGGCGCATAACTCGAGAACCAGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATGCTCTACAATTTTATAATTATAAAAACCGTTAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTAT</canonical_amplicon>
		<polymorphic_amplicon>CCCCACCTTTAAAGAAAGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTAAAAGGCATATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATGTGAAAAATTTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTRTATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCACAGGCGAGTAGAGGAACTTTAAAGGCGCATAACTCGAGAACCAGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATGCTCTACAATTTTATAATTATAAAAACCGTTAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29889</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>284316</contig_pos>
        <strand></strand>
        <context>aaattatatg[C/T]tctacaattt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATG</left_flank>
        <right_flank>TCTACAATTTTATAATTATAAAAACCGTTAACAAACTAATTTTCAGACCA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGATACGAGCCTTTAAAGGTGGGGGGACATGAGAAAAATAATGTTGTCGAAATCCCGTTTAAATATGCTCCTCAAGGTGTTGAACTTGTGAGGGCGATGATTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGTAGAATGCATACTCTGGCCCCAAAAATCCCCCGTAAAATCTCCTTTCCCCCCACCTTTAAAGAAAGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTAAAAGGCATATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATGTGAAAAATTTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTGTATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCACAGGCGAGTAGAGGAACTTTAAAGGCGCATAACTCGAGAACCAGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATGCTCTACAATTTTATAATTATAAAAACCGTTAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTATCAAAGGAAATCGAGAACGTGGAGACGCAGACTCGAATCTGGCTCAATGAGCTGCACGATGTGCATGACAAACGAGTGGATATTGATGTAATTTTAAATTTCATTTGCAGTAATTTCGCTCTATTGAGAATTTCCAGTGCCAAATGATTCGTCTGGGCTCGGAGGTCAAGAAGAACGAGACCTACGTTCAGTTAGCATGCATTGATATCGAGAGAATGGAGATTCGTCATGAAATAAGGTAAATTTACAAACTGTGGCTTTTAGATTTAGTCCCTATTTTTTGCTCTTTGTTCCAGATGGAAGAAATTCCTGCAAAACAGCCCGTGCAAGTAAAAAGTCACTTCATTCTTCTTCTGCAGCAATCCGTCATCGTGATATATCCCATGGAAAACGTCATCACAAATCATCCATTTTTCTTTTTTTCCTTT</canonical>
            <polymorphic>TGAGATACGAGCCTTTAAAGGTGGGGGGACATGAGAAAAATAATGTTGTCGAAATCCCGTTTAAATATGCTCCTCAAGGTGTTGAACTTGTGAGGGCGATGATTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGTAGAATGCATACTCTGGCCCCAAAAATCCCCCGTAAAATCTCCTTTCCCCCCACCTTTAAAGAAAGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTAAAAGGCATATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATGTGAAAAATTTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTGTATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCACAGGCGAGTAGAGGAACTTTAAAGGCGCATAACTCGAGAACCAGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATGYTCTACAATTTTATAATTATAAAAACCGTTAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTATCAAAGGAAATCGAGAACGTGGAGACGCAGACTCGAATCTGGCTCAATGAGCTGCACGATGTGCATGACAAACGAGTGGATATTGATGTAATTTTAAATTTCATTTGCAGTAATTTCGCTCTATTGAGAATTTCCAGTGCCAAATGATTCGTCTGGGCTCGGAGGTCAAGAAGAACGAGACCTACGTTCAGTTAGCATGCATTGATATCGAGAGAATGGAGATTCGTCATGAAATAAGGTAAATTTACAAACTGTGGCTTTTAGATTTAGTCCCTATTTTTTGCTCTTTGTTCCAGATGGAAGAAATTCCTGCAAAACAGCCCGTGCAAGTAAAAAGTCACTTCATTCTTCTTCTGCAGCAATCCGTCATCGTGATATATCCCATGGAAAACGTCATCACAAATCATCCATTTTTCTTTTTTTCCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCCACCTTTAAAGAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATAACTTTTCAAGCTCCTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>386</pcr_amplicon_size>
		<canonical_amplicon>CCCCACCTTTAAAGAAAGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTAAAAGGCATATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATGTGAAAAATTTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTGTATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCACAGGCGAGTAGAGGAACTTTAAAGGCGCATAACTCGAGAACCAGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATGCTCTACAATTTTATAATTATAAAAACCGTTAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTAT</canonical_amplicon>
		<polymorphic_amplicon>CCCCACCTTTAAAGAAAGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTAAAAGGCATATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATGTGAAAAATTTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTGTATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCACAGGCGAGTAGAGGAACTTTAAAGGCGCATAACTCGAGAACCAGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATGYTCTACAATTTTATAATTATAAAAACCGTTAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29890</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>284344</contig_pos>
        <strand></strand>
        <context>ataaaaaccg[T/A]taacaaacta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ACGAAATATGTAAAATTATATGCTCTACAATTTTATAATTATAAAAACCG</left_flank>
        <right_flank>TAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTATCAAAG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATGAGAAAAATAATGTTGTCGAAATCCCGTTTAAATATGCTCCTCAAGGTGTTGAACTTGTGAGGGCGATGATTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGTAGAATGCATACTCTGGCCCCAAAAATCCCCCGTAAAATCTCCTTTCCCCCCACCTTTAAAGAAAGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTAAAAGGCATATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATGTGAAAAATTTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTGTATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCACAGGCGAGTAGAGGAACTTTAAAGGCGCATAACTCGAGAACCAGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATGCTCTACAATTTTATAATTATAAAAACCGTTAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTATCAAAGGAAATCGAGAACGTGGAGACGCAGACTCGAATCTGGCTCAATGAGCTGCACGATGTGCATGACAAACGAGTGGATATTGATGTAATTTTAAATTTCATTTGCAGTAATTTCGCTCTATTGAGAATTTCCAGTGCCAAATGATTCGTCTGGGCTCGGAGGTCAAGAAGAACGAGACCTACGTTCAGTTAGCATGCATTGATATCGAGAGAATGGAGATTCGTCATGAAATAAGGTAAATTTACAAACTGTGGCTTTTAGATTTAGTCCCTATTTTTTGCTCTTTGTTCCAGATGGAAGAAATTCCTGCAAAACAGCCCGTGCAAGTAAAAAGTCACTTCATTCTTCTTCTGCAGCAATCCGTCATCGTGATATATCCCATGGAAAACGTCATCACAAATCATCCATTTTTCTTTTTTTCCTTTTTGATTTTATAACTTTTTTTTCTTTTTA</canonical>
            <polymorphic>ACATGAGAAAAATAATGTTGTCGAAATCCCGTTTAAATATGCTCCTCAAGGTGTTGAACTTGTGAGGGCGATGATTGAAGGTGCGGCGCCGCTACCGACTGAGCCACGCGGTAGAATGCATACTCTGGCCCCAAAAATCCCCCGTAAAATCTCCTTTCCCCCCACCTTTAAAGAAAGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTAAAAGGCATATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATGTGAAAAATTTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTGTATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCACAGGCGAGTAGAGGAACTTTAAAGGCGCATAACTCGAGAACCAGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATGCTCTACAATTTTATAATTATAAAAACCGWTAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTATCAAAGGAAATCGAGAACGTGGAGACGCAGACTCGAATCTGGCTCAATGAGCTGCACGATGTGCATGACAAACGAGTGGATATTGATGTAATTTTAAATTTCATTTGCAGTAATTTCGCTCTATTGAGAATTTCCAGTGCCAAATGATTCGTCTGGGCTCGGAGGTCAAGAAGAACGAGACCTACGTTCAGTTAGCATGCATTGATATCGAGAGAATGGAGATTCGTCATGAAATAAGGTAAATTTACAAACTGTGGCTTTTAGATTTAGTCCCTATTTTTTGCTCTTTGTTCCAGATGGAAGAAATTCCTGCAAAACAGCCCGTGCAAGTAAAAAGTCACTTCATTCTTCTTCTGCAGCAATCCGTCATCGTGATATATCCCATGGAAAACGTCATCACAAATCATCCATTTTTCTTTTTTTCCTTTTTGATTTTATAACTTTTTTTTCTTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>299 254 244 203</canonical_bands>
                <polymorphic_bands>543 254 203</polymorphic_bands>
            </assay>
            <assay>
                <site>GTTAAC</site>
                <isoschizomers>
                    <enzyme>BstHPI</enzyme>
                    <enzyme>HpaI</enzyme>
                    <enzyme>KspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>499 316 185</canonical_bands>
                <polymorphic_bands>684 316</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 316 185</canonical_bands>
                <polymorphic_bands>684 316</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>362 138 136 135 102 56 38 33</canonical_bands>
                <polymorphic_bands>362 240 136 135 56 38 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCCACCTTTAAAGAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>CTCGATTTCCTTTGATAACTTTT</pcr_primer_p2>
		<pcr_amplicon_size>400</pcr_amplicon_size>
		<canonical_amplicon>CCCCACCTTTAAAGAAAGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTAAAAGGCATATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATGTGAAAAATTTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTGTATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCACAGGCGAGTAGAGGAACTTTAAAGGCGCATAACTCGAGAACCAGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATGCTCTACAATTTTATAATTATAAAAACCGTTAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTATCAAAGGAAATCGAG</canonical_amplicon>
		<polymorphic_amplicon>CCCCACCTTTAAAGAAAGAAGGGGCGCTTGCACCATTCTCGTACCTCTAGAAGTGCGCCCTACCTTAAAAGGCATATAGCTCAAAAACGAAAACAGTTATCAGAAAGTTGCAAACAAATAAAATGTGAAAAATTTTATGCTCTACATTTTTGTAGTTGACAACTTTTTTGTATATTTTTTGGTTCGTGAGATACGGACCTTTAAAGTAGGCTAACCCCCACAGGCGAGTAGAGGAACTTTAAAGGCGCATAACTCGAGAACCAGAATAGCTTCAAAAAAATTGACAACTAACGAAATATGTAAAATTATATGCTCTACAATTTTATAATTATAAAAACCGWTAACAAACTAATTTTCAGACCAACAAGAGGAGCTTGAAAAGTTATCAAAGGAAATCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29891</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>401646</contig_pos>
        <strand>+</strand>
        <context>ATGAGTTTAT[A/T]TKKTTCAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGCTCGAGCCAACAATTTGACGGAGACACAGGTTTGTAGTATGAGTTTAT</left_flank>
        <right_flank>TTTTTCAAAGCTGTTCCCCACCGTTTTCTCTTCAAAACAAGCCCAGAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTAGTACTCTACCAGAGCCATTTCAAACGAATTTCATTTCGTTAAAACGATTTCTTTTTGTTTTCCGGTCATTTTGATACCCATATCGACCCAATTCGGAAGTATTCAATTTTTGACGTCTTCTGAATTCAGAATCTTGGAAATATAGGCAATATGGGTATGAAAATGACGGGAATTCGATAAGTATCAGTTCTTACAACATGAAAATTTGATCCAACCGAATTTATTCAACTTTTCAGGTAAAACATTGGTTCCAAAATCGACGTAATGACGAGGAGGTCAAGGAAGATAGGGAGTCTGACTATTCTGATTCTGATAGCGACTATGATTATGATATGGACGGACCGATGGAACAGTATTCAAAGAAATTCTCTTTTCGACAAGTCGAAGCTCTGGAGCAACATTACGCTAAAAACAAGTATCCTGATAGTGAGGTCCGGGAACGATTGGCTCGAGCCAACAATTTGACGGAGACACAGGTTTGTAGTATGAGTTTATTTTTTTCAAAGCTGTTCCCCACCGTTTTCTCTTCAAAACAAGCCCAGAATCACTCAATTCCTTCATTCCTGAGCCAAGAAACACATTTTGCTTCTCTGCGCCCTCCGCTCTCTAGCTTTGACCTCTTTAAAGGTGCATATATAGCTTCAAATTCAACCCTGAAAAATTAAAATCTTATAGTTTTGTAGGAAATTTTGAGAGCTTTCTGGTGATATACAATACCAATACAAAACATGTTTTATCCTGGCTTAAAAATCGCTTTTCTAATTTTTGCCCGTTTTCAGGTGGAGACTTATTTTATAGACCGACGAAGATTCCAAAATGCTGAATCCTTGAACCAGATTGTTAGAAATCAACAAAGCCAAGGAGTGTTTAGAGATAGAACAAGGGATAAAATTGCTACCGTGCCAACCTGGCACTTGAGTCCCACGAAATCTGAACGTTTCGGCATCAGCAAGCCTTCAAGCTCGTCTATCCTCCCTTCTGGAAAGGATCTTCGTC</canonical>
            <polymorphic>GTTAGTACTCTACCAGAGCCATTTCAAACGAATTTCATTTCGTTAAAACGATTTCTTTTTGTTTTCCGGTCATTTTGATACCCATATCGACCCAATTCGGAAGTATTCAATTTTTGACGTCTTCTGAATTCAGAATCTTGGAAATATAGGCAATATGGGTATGAAAATGACGGGAATTCGATAAGTATCAGTTCTTACAACATGAAAATTTGATCCAACCGAATTTATTCAACTTTTCAGGTAAAACATTGGTTCCAAAATCGACGTAATGACGAGGAGGTCAAGGAAGATAGGGAGTCTGACTATTCTGATTCTGATAGCGACTATGATTATGATATGGACGGACCGATGGAACAGTATTCAAAGAAATTCTCTTTTCGACAAGTCGAAGCTCTGGAGCAACATTACGCTAAAAACAAGTATCCTGATAGTGAGGTCCGGGAACGATTGGCTCGAGCCAACAATTTGACGGAGACACAGGTTTGTAGTATGAGTTTATWTTTTTCAAAGCTGTTCCCCACCGTTTTCTCTTCAAAACAAGCCCAGAATCACTCAATTCCTTCATTCCTGAGCCAAGAAACACATTTTGCTTCTCTGCGCCCTCCGCTCTCTAGCTTTGACCTCTTTAAAGGTGCATATATAGCTTCAAATTCAACCCTGAAAAATTAAAATCTTATAGTTTTGTAGGAAATTTTGAGAGCTTTCTGGTGATATACAATACCAATACAAAACATGTTTTATCCTGGCTTAAAAATCGCTTTTCTAATTTTTGCCCGTTTTCAGGTGGAGACTTATTTTATAGACCGACGAAGATTCCAAAATGCTGAATCCTTGAACCAGATTGTTAGAAATCAACAAAGCCAAGGAGTGTTTAGAGATAGAACAAGGGATAAAATTGCTACCGTGCCAACCTGGCACTTGAGTCCCACGAAATCTGAACGTTTCGGCATCAGCAAGCCTTCAAGCTCGTCTATCCTCCCTTCTGGAAAGGATCTTCGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAAGTATCCTGATAGTGAGGTC</pcr_primer_p1>
		<pcr_primer_p2>CGATTTTTAAGCCAGGATAA</pcr_primer_p2>
		<pcr_amplicon_size>343</pcr_amplicon_size>
		<canonical_amplicon>AACAAGTATCCTGATAGTGAGGTCCGGGAACGATTGGCTCGAGCCAACAATTTGACGGAGACACAGGTTTGTAGTATGAGTTTATTTTTTTCAAAGCTGTTCCCCACCGTTTTCTCTTCAAAACAAGCCCAGAATCACTCAATTCCTTCATTCCTGAGCCAAGAAACACATTTTGCTTCTCTGCGCCCTCCGCTCTCTAGCTTTGACCTCTTTAAAGGTGCATATATAGCTTCAAATTCAACCCTGAAAAATTAAAATCTTATAGTTTTGTAGGAAATTTTGAGAGCTTTCTGGTGATATACAATACCAATACAAAACATGTTTTATCCTGGCTTAAAAATCG</canonical_amplicon>
		<polymorphic_amplicon>AACAAGTATCCTGATAGTGAGGTCCGGGAACGATTGGCTCGAGCCAACAATTTGACGGAGACACAGGTTTGTAGTATGAGTTTATWTTTTTCAAAGCTGTTCCCCACCGTTTTCTCTTCAAAACAAGCCCAGAATCACTCAATTCCTTCATTCCTGAGCCAAGAAACACATTTTGCTTCTCTGCGCCCTCCGCTCTCTAGCTTTGACCTCTTTAAAGGTGCATATATAGCTTCAAATTCAACCCTGAAAAATTAAAATCTTATAGTTTTGTAGGAAATTTTGAGAGCTTTCTGGTGATATACAATACCAATACAAAACATGTTTTATCCTGGCTTAAAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29892</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>401648</contig_pos>
        <strand>+</strand>
        <context>GAGTTTATWT[G/T]KTTCAAAGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCGAGCCAACAATTTGACGGAGACACAGGTTTGTAGTATGAGTTTATTT</left_flank>
        <right_flank>TTTCAAAGCTGTTCCCCACCGTTTTCTCTTCAAAACAAGCCCAGAATCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTACTCTACCAGAGCCATTTCAAACGAATTTCATTTCGTTAAAACGATTTCTTTTTGTTTTCCGGTCATTTTGATACCCATATCGACCCAATTCGGAAGTATTCAATTTTTGACGTCTTCTGAATTCAGAATCTTGGAAATATAGGCAATATGGGTATGAAAATGACGGGAATTCGATAAGTATCAGTTCTTACAACATGAAAATTTGATCCAACCGAATTTATTCAACTTTTCAGGTAAAACATTGGTTCCAAAATCGACGTAATGACGAGGAGGTCAAGGAAGATAGGGAGTCTGACTATTCTGATTCTGATAGCGACTATGATTATGATATGGACGGACCGATGGAACAGTATTCAAAGAAATTCTCTTTTCGACAAGTCGAAGCTCTGGAGCAACATTACGCTAAAAACAAGTATCCTGATAGTGAGGTCCGGGAACGATTGGCTCGAGCCAACAATTTGACGGAGACACAGGTTTGTAGTATGAGTTTATTTTTTTCAAAGCTGTTCCCCACCGTTTTCTCTTCAAAACAAGCCCAGAATCACTCAATTCCTTCATTCCTGAGCCAAGAAACACATTTTGCTTCTCTGCGCCCTCCGCTCTCTAGCTTTGACCTCTTTAAAGGTGCATATATAGCTTCAAATTCAACCCTGAAAAATTAAAATCTTATAGTTTTGTAGGAAATTTTGAGAGCTTTCTGGTGATATACAATACCAATACAAAACATGTTTTATCCTGGCTTAAAAATCGCTTTTCTAATTTTTGCCCGTTTTCAGGTGGAGACTTATTTTATAGACCGACGAAGATTCCAAAATGCTGAATCCTTGAACCAGATTGTTAGAAATCAACAAAGCCAAGGAGTGTTTAGAGATAGAACAAGGGATAAAATTGCTACCGTGCCAACCTGGCACTTGAGTCCCACGAAATCTGAACGTTTCGGCATCAGCAAGCCTTCAAGCTCGTCTATCCTCCCTTCTGGAAAGGATCTTCGTCAA</canonical>
            <polymorphic>TAGTACTCTACCAGAGCCATTTCAAACGAATTTCATTTCGTTAAAACGATTTCTTTTTGTTTTCCGGTCATTTTGATACCCATATCGACCCAATTCGGAAGTATTCAATTTTTGACGTCTTCTGAATTCAGAATCTTGGAAATATAGGCAATATGGGTATGAAAATGACGGGAATTCGATAAGTATCAGTTCTTACAACATGAAAATTTGATCCAACCGAATTTATTCAACTTTTCAGGTAAAACATTGGTTCCAAAATCGACGTAATGACGAGGAGGTCAAGGAAGATAGGGAGTCTGACTATTCTGATTCTGATAGCGACTATGATTATGATATGGACGGACCGATGGAACAGTATTCAAAGAAATTCTCTTTTCGACAAGTCGAAGCTCTGGAGCAACATTACGCTAAAAACAAGTATCCTGATAGTGAGGTCCGGGAACGATTGGCTCGAGCCAACAATTTGACGGAGACACAGGTTTGTAGTATGAGTTTATTTKTTTCAAAGCTGTTCCCCACCGTTTTCTCTTCAAAACAAGCCCAGAATCACTCAATTCCTTCATTCCTGAGCCAAGAAACACATTTTGCTTCTCTGCGCCCTCCGCTCTCTAGCTTTGACCTCTTTAAAGGTGCATATATAGCTTCAAATTCAACCCTGAAAAATTAAAATCTTATAGTTTTGTAGGAAATTTTGAGAGCTTTCTGGTGATATACAATACCAATACAAAACATGTTTTATCCTGGCTTAAAAATCGCTTTTCTAATTTTTGCCCGTTTTCAGGTGGAGACTTATTTTATAGACCGACGAAGATTCCAAAATGCTGAATCCTTGAACCAGATTGTTAGAAATCAACAAAGCCAAGGAGTGTTTAGAGATAGAACAAGGGATAAAATTGCTACCGTGCCAACCTGGCACTTGAGTCCCACGAAATCTGAACGTTTCGGCATCAGCAAGCCTTCAAGCTCGTCTATCCTCCCTTCTGGAAAGGATCTTCGTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAAGTATCCTGATAGTGAGGTC</pcr_primer_p1>
		<pcr_primer_p2>CGATTTTTAAGCCAGGATAA</pcr_primer_p2>
		<pcr_amplicon_size>343</pcr_amplicon_size>
		<canonical_amplicon>AACAAGTATCCTGATAGTGAGGTCCGGGAACGATTGGCTCGAGCCAACAATTTGACGGAGACACAGGTTTGTAGTATGAGTTTATTTTTTTCAAAGCTGTTCCCCACCGTTTTCTCTTCAAAACAAGCCCAGAATCACTCAATTCCTTCATTCCTGAGCCAAGAAACACATTTTGCTTCTCTGCGCCCTCCGCTCTCTAGCTTTGACCTCTTTAAAGGTGCATATATAGCTTCAAATTCAACCCTGAAAAATTAAAATCTTATAGTTTTGTAGGAAATTTTGAGAGCTTTCTGGTGATATACAATACCAATACAAAACATGTTTTATCCTGGCTTAAAAATCG</canonical_amplicon>
		<polymorphic_amplicon>AACAAGTATCCTGATAGTGAGGTCCGGGAACGATTGGCTCGAGCCAACAATTTGACGGAGACACAGGTTTGTAGTATGAGTTTATTTKTTTCAAAGCTGTTCCCCACCGTTTTCTCTTCAAAACAAGCCCAGAATCACTCAATTCCTTCATTCCTGAGCCAAGAAACACATTTTGCTTCTCTGCGCCCTCCGCTCTCTAGCTTTGACCTCTTTAAAGGTGCATATATAGCTTCAAATTCAACCCTGAAAAATTAAAATCTTATAGTTTTGTAGGAAATTTTGAGAGCTTTCTGGTGATATACAATACCAATACAAAACATGTTTTATCCTGGCTTAAAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29893</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>401649</contig_pos>
        <strand>+</strand>
        <context>AGTTTATWTK[G/T]TTCAAAGCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGAGCCAACAATTTGACGGAGACACAGGTTTGTAGTATGAGTTTATTTT</left_flank>
        <right_flank>TTCAAAGCTGTTCCCCACCGTTTTCTCTTCAAAACAAGCCCAGAATCACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTACTCTACCAGAGCCATTTCAAACGAATTTCATTTCGTTAAAACGATTTCTTTTTGTTTTCCGGTCATTTTGATACCCATATCGACCCAATTCGGAAGTATTCAATTTTTGACGTCTTCTGAATTCAGAATCTTGGAAATATAGGCAATATGGGTATGAAAATGACGGGAATTCGATAAGTATCAGTTCTTACAACATGAAAATTTGATCCAACCGAATTTATTCAACTTTTCAGGTAAAACATTGGTTCCAAAATCGACGTAATGACGAGGAGGTCAAGGAAGATAGGGAGTCTGACTATTCTGATTCTGATAGCGACTATGATTATGATATGGACGGACCGATGGAACAGTATTCAAAGAAATTCTCTTTTCGACAAGTCGAAGCTCTGGAGCAACATTACGCTAAAAACAAGTATCCTGATAGTGAGGTCCGGGAACGATTGGCTCGAGCCAACAATTTGACGGAGACACAGGTTTGTAGTATGAGTTTATTTTTTTCAAAGCTGTTCCCCACCGTTTTCTCTTCAAAACAAGCCCAGAATCACTCAATTCCTTCATTCCTGAGCCAAGAAACACATTTTGCTTCTCTGCGCCCTCCGCTCTCTAGCTTTGACCTCTTTAAAGGTGCATATATAGCTTCAAATTCAACCCTGAAAAATTAAAATCTTATAGTTTTGTAGGAAATTTTGAGAGCTTTCTGGTGATATACAATACCAATACAAAACATGTTTTATCCTGGCTTAAAAATCGCTTTTCTAATTTTTGCCCGTTTTCAGGTGGAGACTTATTTTATAGACCGACGAAGATTCCAAAATGCTGAATCCTTGAACCAGATTGTTAGAAATCAACAAAGCCAAGGAGTGTTTAGAGATAGAACAAGGGATAAAATTGCTACCGTGCCAACCTGGCACTTGAGTCCCACGAAATCTGAACGTTTCGGCATCAGCAAGCCTTCAAGCTCGTCTATCCTCCCTTCTGGAAAGGATCTTCGTCAAA</canonical>
            <polymorphic>AGTACTCTACCAGAGCCATTTCAAACGAATTTCATTTCGTTAAAACGATTTCTTTTTGTTTTCCGGTCATTTTGATACCCATATCGACCCAATTCGGAAGTATTCAATTTTTGACGTCTTCTGAATTCAGAATCTTGGAAATATAGGCAATATGGGTATGAAAATGACGGGAATTCGATAAGTATCAGTTCTTACAACATGAAAATTTGATCCAACCGAATTTATTCAACTTTTCAGGTAAAACATTGGTTCCAAAATCGACGTAATGACGAGGAGGTCAAGGAAGATAGGGAGTCTGACTATTCTGATTCTGATAGCGACTATGATTATGATATGGACGGACCGATGGAACAGTATTCAAAGAAATTCTCTTTTCGACAAGTCGAAGCTCTGGAGCAACATTACGCTAAAAACAAGTATCCTGATAGTGAGGTCCGGGAACGATTGGCTCGAGCCAACAATTTGACGGAGACACAGGTTTGTAGTATGAGTTTATTTTKTTCAAAGCTGTTCCCCACCGTTTTCTCTTCAAAACAAGCCCAGAATCACTCAATTCCTTCATTCCTGAGCCAAGAAACACATTTTGCTTCTCTGCGCCCTCCGCTCTCTAGCTTTGACCTCTTTAAAGGTGCATATATAGCTTCAAATTCAACCCTGAAAAATTAAAATCTTATAGTTTTGTAGGAAATTTTGAGAGCTTTCTGGTGATATACAATACCAATACAAAACATGTTTTATCCTGGCTTAAAAATCGCTTTTCTAATTTTTGCCCGTTTTCAGGTGGAGACTTATTTTATAGACCGACGAAGATTCCAAAATGCTGAATCCTTGAACCAGATTGTTAGAAATCAACAAAGCCAAGGAGTGTTTAGAGATAGAACAAGGGATAAAATTGCTACCGTGCCAACCTGGCACTTGAGTCCCACGAAATCTGAACGTTTCGGCATCAGCAAGCCTTCAAGCTCGTCTATCCTCCCTTCTGGAAAGGATCTTCGTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAAGTATCCTGATAGTGAGGTC</pcr_primer_p1>
		<pcr_primer_p2>CGATTTTTAAGCCAGGATAA</pcr_primer_p2>
		<pcr_amplicon_size>343</pcr_amplicon_size>
		<canonical_amplicon>AACAAGTATCCTGATAGTGAGGTCCGGGAACGATTGGCTCGAGCCAACAATTTGACGGAGACACAGGTTTGTAGTATGAGTTTATTTTTTTCAAAGCTGTTCCCCACCGTTTTCTCTTCAAAACAAGCCCAGAATCACTCAATTCCTTCATTCCTGAGCCAAGAAACACATTTTGCTTCTCTGCGCCCTCCGCTCTCTAGCTTTGACCTCTTTAAAGGTGCATATATAGCTTCAAATTCAACCCTGAAAAATTAAAATCTTATAGTTTTGTAGGAAATTTTGAGAGCTTTCTGGTGATATACAATACCAATACAAAACATGTTTTATCCTGGCTTAAAAATCG</canonical_amplicon>
		<polymorphic_amplicon>AACAAGTATCCTGATAGTGAGGTCCGGGAACGATTGGCTCGAGCCAACAATTTGACGGAGACACAGGTTTGTAGTATGAGTTTATTTTKTTCAAAGCTGTTCCCCACCGTTTTCTCTTCAAAACAAGCCCAGAATCACTCAATTCCTTCATTCCTGAGCCAAGAAACACATTTTGCTTCTCTGCGCCCTCCGCTCTCTAGCTTTGACCTCTTTAAAGGTGCATATATAGCTTCAAATTCAACCCTGAAAAATTAAAATCTTATAGTTTTGTAGGAAATTTTGAGAGCTTTCTGGTGATATACAATACCAATACAAAACATGTTTTATCCTGGCTTAAAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29894</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>410853</contig_pos>
        <strand></strand>
        <context>GGaaaaaatt[T/A]aaawttttaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATT</left_flank>
        <right_flank>AAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGTGACAAAGACTTCAAGAAGAAAACGAAGAACTTCTGATGATAATGGAGATGTCATCGAACTGGATGATTTTTTCCAAAATTAACTACTGTGCAATTTGTGAAATTTTTAATTTTTCTGAATATATAAAGATTCCAGAAACATTTTGAACAGCTTTCACTTCGTTAAAACAATTTCCTGCCACTTTCCGGTCATTTTGATACCCAGATTGCCTATATTCCATAAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCTCGAAATCTCGAAATGTGGGCAATATGGGTATCAAAATAACGGGAATTCAATGAGTAACAATTCTAACGACATGAAAAGTTGAAAAAGTAAGAAATTCCATTTATTTTTCTATAAAATAAGAAAAAATCATTTGTTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAA</canonical>
            <polymorphic>ACGTGACAAAGACTTCAAGAAGAAAACGAAGAACTTCTGATGATAATGGAGATGTCATCGAACTGGATGATTTTTTCCAAAATTAACTACTGTGCAATTTGTGAAATTTTTAATTTTTCTGAATATATAAAGATTCCAGAAACATTTTGAACAGCTTTCACTTCGTTAAAACAATTTCCTGCCACTTTCCGGTCATTTTGATACCCAGATTGCCTATATTCCATAAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCTCGAAATCTCGAAATGTGGGCAATATGGGTATCAAAATAACGGGAATTCAATGAGTAACAATTCTAACGACATGAAAAGTTGAAAAAGTAAGAAATTCCATTTATTTTTCTATAAAATAAGAAAAAATCATTTGTTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTWAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>141 128 116 116 104 103 87 49 49 30 17 11 11 9 8 8 7 6</canonical_bands>
                <polymorphic_bands>147 128 116 116 104 103 87 49 49 30 17 11 11 9 8 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 473 19 8</canonical_bands>
                <polymorphic_bands>508 473 19</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>230 210 150 103 83 65 56 30 27 19 19 8</canonical_bands>
                <polymorphic_bands>230 210 150 111 83 65 56 30 27 19 19</polymorphic_bands>
            </assay>
            <assay>
                <site>ATTTAAAT</site>
                <isoschizomers>
                    <enzyme>SmiI</enzyme>
                    <enzyme>SwaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTCAGAAGGAGAGAGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTGGAAATTCTTCGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTT</canonical_amplicon>
		<polymorphic_amplicon>CGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTWAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29895</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>410857</contig_pos>
        <strand></strand>
        <context>aaaattwaaa[T/A]ttttaaattt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAA</left_flank>
        <right_flank>TTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATAC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACAAAGACTTCAAGAAGAAAACGAAGAACTTCTGATGATAATGGAGATGTCATCGAACTGGATGATTTTTTCCAAAATTAACTACTGTGCAATTTGTGAAATTTTTAATTTTTCTGAATATATAAAGATTCCAGAAACATTTTGAACAGCTTTCACTTCGTTAAAACAATTTCCTGCCACTTTCCGGTCATTTTGATACCCAGATTGCCTATATTCCATAAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCTCGAAATCTCGAAATGTGGGCAATATGGGTATCAAAATAACGGGAATTCAATGAGTAACAATTCTAACGACATGAAAAGTTGAAAAAGTAAGAAATTCCATTTATTTTTCTATAAAATAAGAAAAAATCATTTGTTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTG</canonical>
            <polymorphic>GACAAAGACTTCAAGAAGAAAACGAAGAACTTCTGATGATAATGGAGATGTCATCGAACTGGATGATTTTTTCCAAAATTAACTACTGTGCAATTTGTGAAATTTTTAATTTTTCTGAATATATAAAGATTCCAGAAACATTTTGAACAGCTTTCACTTCGTTAAAACAATTTCCTGCCACTTTCCGGTCATTTTGATACCCAGATTGCCTATATTCCATAAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCTCGAAATCTCGAAATGTGGGCAATATGGGTATCAAAATAACGGGAATTCAATGAGTAACAATTCTAACGACATGAAAAGTTGAAAAAGTAAGAAATTCCATTTATTTTTCTATAAAATAAGAAAAAATCATTTGTTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAAWTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>141 128 120 116 103 100 87 49 49 30 17 11 11 9 8 8 7 6</canonical_bands>
                <polymorphic_bands>141 128 120 116 103 100 87 49 49 30 17 14 11 11 9 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>ATTTAAAT</site>
                <isoschizomers>
                    <enzyme>SmiI</enzyme>
                    <enzyme>SwaI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>103 84 81 80 76 61 60 59 55 49 38 35 34 30 19 17 15 15 11 11 9 9 8 8 7 7 7 6 6</canonical_bands>
                <polymorphic_bands>103 84 81 80 76 61 60 59 55 49 38 35 34 30 19 17 15 15 14 11 11 9 9 8 7 7 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTCAGAAGGAGAGAGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTGGAAATTCTTCGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTT</canonical_amplicon>
		<polymorphic_amplicon>CGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAAWTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29896</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>410887</contig_pos>
        <strand></strand>
        <context>ttttaaaaaa[T/A]ttCAAAATCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAA</left_flank>
        <right_flank>TTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGATGATAATGGAGATGTCATCGAACTGGATGATTTTTTCCAAAATTAACTACTGTGCAATTTGTGAAATTTTTAATTTTTCTGAATATATAAAGATTCCAGAAACATTTTGAACAGCTTTCACTTCGTTAAAACAATTTCCTGCCACTTTCCGGTCATTTTGATACCCAGATTGCCTATATTCCATAAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCTCGAAATCTCGAAATGTGGGCAATATGGGTATCAAAATAACGGGAATTCAATGAGTAACAATTCTAACGACATGAAAAGTTGAAAAAGTAAGAAATTCCATTTATTTTTCTATAAAATAAGAAAAAATCATTTGTTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAAC</canonical>
            <polymorphic>TTCTGATGATAATGGAGATGTCATCGAACTGGATGATTTTTTCCAAAATTAACTACTGTGCAATTTGTGAAATTTTTAATTTTTCTGAATATATAAAGATTCCAGAAACATTTTGAACAGCTTTCACTTCGTTAAAACAATTTCCTGCCACTTTCCGGTCATTTTGATACCCAGATTGCCTATATTCCATAAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCTCGAAATCTCGAAATGTGGGCAATATGGGTATCAAAATAACGGGAATTCAATGAGTAACAATTCTAACGACATGAAAAGTTGAAAAAGTAAGAAATTCCATTTATTTTTCTATAAAATAAGAAAAAATCATTTGTTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAAWTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>141 128 120 116 103 87 70 49 49 30 30 17 11 11 9 8 8 7 6</canonical_bands>
                <polymorphic_bands>141 128 127 120 103 87 70 49 49 30 30 17 11 9 8 8 7 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>103 84 81 80 61 60 59 55 49 46 38 35 34 30 30 19 17 15 15 11 11 9 9 8 8 7 7 7 6 6</canonical_bands>
                <polymorphic_bands>103 92 84 80 61 60 59 55 49 46 38 35 34 30 30 19 17 15 15 11 9 9 8 8 7 7 7 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTCAGAAGGAGAGAGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTGGAAATTCTTCGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTT</canonical_amplicon>
		<polymorphic_amplicon>CGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAAWTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29897</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>411134</contig_pos>
        <strand></strand>
        <context>caaatttcac[A/T]tcgytaaaac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCAC</left_flank>
        <right_flank>TCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATATGGGTATCAAAATAACGGGAATTCAATGAGTAACAATTCTAACGACATGAAAAGTTGAAAAAGTAAGAAATTCCATTTATTTTTCTATAAAATAAGAAAAAATCATTTGTTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAACCCGAAAAGCATTTTTAGCAAATTTCACTTCGTTGAAATAATTTTTGTAGTTTCACGGTCGTTTTGATACCCATATTGACCCTATTCGGTGAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCACAAAATTTGGAAGTATAGGCAATATGGGTATCAAAATGACGGAAATCTCGTGGGTAACATTTCTAACAAAATGAAAAGTTGAAAAACTGGCAAATAGAAACAAATTGCCAAAAAATTCAA</canonical>
            <polymorphic>CAATATGGGTATCAAAATAACGGGAATTCAATGAGTAACAATTCTAACGACATGAAAAGTTGAAAAAGTAAGAAATTCCATTTATTTTTCTATAAAATAAGAAAAAATCATTTGTTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACWTCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAACCCGAAAAGCATTTTTAGCAAATTTCACTTCGTTGAAATAATTTTTGTAGTTTCACGGTCGTTTTGATACCCATATTGACCCTATTCGGTGAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCACAAAATTTGGAAGTATAGGCAATATGGGTATCAAAATGACGGAAATCTCGTGGGTAACATTTCTAACAAAATGAAAAGTTGAAAAACTGGCAAATAGAAACAAATTGCCAAAAAATTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTATTCGAGCATTTTACCTA</pcr_primer_p1>
		<pcr_primer_p2>TCGAGAATTGCTTTTAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>879</pcr_amplicon_size>
		<canonical_amplicon>TCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTAC</canonical_amplicon>
		<polymorphic_amplicon>TCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACWTCGTTAAAACAATTTCCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29898</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>411138</contig_pos>
        <strand></strand>
        <context>tttcacwtcg[T/C]taaaacaatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCG</left_flank>
        <right_flank>TAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGGTATCAAAATAACGGGAATTCAATGAGTAACAATTCTAACGACATGAAAAGTTGAAAAAGTAAGAAATTCCATTTATTTTTCTATAAAATAAGAAAAAATCATTTGTTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAACCCGAAAAGCATTTTTAGCAAATTTCACTTCGTTGAAATAATTTTTGTAGTTTCACGGTCGTTTTGATACCCATATTGACCCTATTCGGTGAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCACAAAATTTGGAAGTATAGGCAATATGGGTATCAAAATGACGGAAATCTCGTGGGTAACATTTCTAACAAAATGAAAAGTTGAAAAACTGGCAAATAGAAACAAATTGCCAAAAAATTCAAAAAA</canonical>
            <polymorphic>ATGGGTATCAAAATAACGGGAATTCAATGAGTAACAATTCTAACGACATGAAAAGTTGAAAAAGTAAGAAATTCCATTTATTTTTCTATAAAATAAGAAAAAATCATTTGTTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGYTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAACCCGAAAAGCATTTTTAGCAAATTTCACTTCGTTGAAATAATTTTTGTAGTTTCACGGTCGTTTTGATACCCATATTGACCCTATTCGGTGAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCACAAAATTTGGAAGTATAGGCAATATGGGTATCAAAATGACGGAAATCTCGTGGGTAACATTTCTAACAAAATGAAAAGTTGAAAAACTGGCAAATAGAAACAAATTGCCAAAAAATTCAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>255 210 150 111 103 95 30 19 19 8</canonical_bands>
                <polymorphic_bands>255 210 169 111 103 95 30 19 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATTATTCGAGCATTTTACCTA</pcr_primer_p1>
		<pcr_primer_p2>TCGAGAATTGCTTTTAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>879</pcr_amplicon_size>
		<canonical_amplicon>TCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTT</canonical_amplicon>
		<polymorphic_amplicon>TCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGYTAAAACAATTTCCTACAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29899</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>411161</contig_pos>
        <strand></strand>
        <context>ctacagtttt[T/C]cggtcatttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTT</left_flank>
        <right_flank>CGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAATGAGTAACAATTCTAACGACATGAAAAGTTGAAAAAGTAAGAAATTCCATTTATTTTTCTATAAAATAAGAAAAAATCATTTGTTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAACCCGAAAAGCATTTTTAGCAAATTTCACTTCGTTGAAATAATTTTTGTAGTTTCACGGTCGTTTTGATACCCATATTGACCCTATTCGGTGAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCACAAAATTTGGAAGTATAGGCAATATGGGTATCAAAATGACGGAAATCTCGTGGGTAACATTTCTAACAAAATGAAAAGTTGAAAAACTGGCAAATAGAAACAAATTGCCAAAAAATTCAAAAAAAAATATTTTTCCAATTTTGAAGT</canonical>
            <polymorphic>TCAATGAGTAACAATTCTAACGACATGAAAAGTTGAAAAAGTAAGAAATTCCATTTATTTTTCTATAAAATAAGAAAAAATCATTTGTTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTYCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAACCCGAAAAGCATTTTTAGCAAATTTCACTTCGTTGAAATAATTTTTGTAGTTTCACGGTCGTTTTGATACCCATATTGACCCTATTCGGTGAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCACAAAATTTGGAAGTATAGGCAATATGGGTATCAAAATGACGGAAATCTCGTGGGTAACATTTCTAACAAAATGAAAAGTTGAAAAACTGGCAAATAGAAACAAATTGCCAAAAAATTCAAAAAAAAATATTTTTCCAATTTTGAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTATTCGAGCATTTTACCTA</pcr_primer_p1>
		<pcr_primer_p2>TCGAGAATTGCTTTTAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>879</pcr_amplicon_size>
		<canonical_amplicon>TCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATA</canonical_amplicon>
		<polymorphic_amplicon>TCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTYCGGTCATTTTGATACCAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29900</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>411183</contig_pos>
        <strand></strand>
        <context>ataccaatat[T/C]gaccrwattc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATAT</left_flank>
        <right_flank>GACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATGAAAAGTTGAAAAAGTAAGAAATTCCATTTATTTTTCTATAAAATAAGAAAAAATCATTTGTTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAACCCGAAAAGCATTTTTAGCAAATTTCACTTCGTTGAAATAATTTTTGTAGTTTCACGGTCGTTTTGATACCCATATTGACCCTATTCGGTGAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCACAAAATTTGGAAGTATAGGCAATATGGGTATCAAAATGACGGAAATCTCGTGGGTAACATTTCTAACAAAATGAAAAGTTGAAAAACTGGCAAATAGAAACAAATTGCCAAAAAATTCAAAAAAAAATATTTTTCCAATTTTGAAGTTTTCACATTTTCAGACTCCATG</canonical>
            <polymorphic>ACATGAAAAGTTGAAAAAGTAAGAAATTCCATTTATTTTTCTATAAAATAAGAAAAAATCATTTGTTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATYGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAACCCGAAAAGCATTTTTAGCAAATTTCACTTCGTTGAAATAATTTTTGTAGTTTCACGGTCGTTTTGATACCCATATTGACCCTATTCGGTGAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCACAAAATTTGGAAGTATAGGCAATATGGGTATCAAAATGACGGAAATCTCGTGGGTAACATTTCTAACAAAATGAAAAGTTGAAAAACTGGCAAATAGAAACAAATTGCCAAAAAATTCAAAAAAAAATATTTTTCCAATTTTGAAGTTTTCACATTTTCAGACTCCATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>497 462 41</canonical_bands>
                <polymorphic_bands>959 41</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATTATTCGAGCATTTTACCTA</pcr_primer_p1>
		<pcr_primer_p2>TCGAGAATTGCTTTTAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>879</pcr_amplicon_size>
		<canonical_amplicon>TCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTC</canonical_amplicon>
		<polymorphic_amplicon>TCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATYGACCATATTCGGGATGGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29901</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>411188</contig_pos>
        <strand></strand>
        <context>aatatygacc[A/G]wattcgggaw</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACC</left_flank>
        <right_flank>TATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAGTTGAAAAAGTAAGAAATTCCATTTATTTTTCTATAAAATAAGAAAAAATCATTTGTTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAACCCGAAAAGCATTTTTAGCAAATTTCACTTCGTTGAAATAATTTTTGTAGTTTCACGGTCGTTTTGATACCCATATTGACCCTATTCGGTGAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCACAAAATTTGGAAGTATAGGCAATATGGGTATCAAAATGACGGAAATCTCGTGGGTAACATTTCTAACAAAATGAAAAGTTGAAAAACTGGCAAATAGAAACAAATTGCCAAAAAATTCAAAAAAAAATATTTTTCCAATTTTGAAGTTTTCACATTTTCAGACTCCATGATCAT</canonical>
            <polymorphic>AAAAGTTGAAAAAGTAAGAAATTCCATTTATTTTTCTATAAAATAAGAAAAAATCATTTGTTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCRTATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAACCCGAAAAGCATTTTTAGCAAATTTCACTTCGTTGAAATAATTTTTGTAGTTTCACGGTCGTTTTGATACCCATATTGACCCTATTCGGTGAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCACAAAATTTGGAAGTATAGGCAATATGGGTATCAAAATGACGGAAATCTCGTGGGTAACATTTCTAACAAAATGAAAAGTTGAAAAACTGGCAAATAGAAACAAATTGCCAAAAAATTCAAAAAAAAATATTTTTCCAATTTTGAAGTTTTCACATTTTCAGACTCCATGATCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>XcmI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATTATTCGAGCATTTTACCTA</pcr_primer_p1>
		<pcr_primer_p2>TCGAGAATTGCTTTTAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>879</pcr_amplicon_size>
		<canonical_amplicon>TCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTT</canonical_amplicon>
		<polymorphic_amplicon>TCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCRTATTCGGGATGGTTCGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29902</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>411189</contig_pos>
        <strand></strand>
        <context>atatygaccr[T/A]attcgggawg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCA</left_flank>
        <right_flank>ATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTTGAAAAAGTAAGAAATTCCATTTATTTTTCTATAAAATAAGAAAAAATCATTTGTTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAACCCGAAAAGCATTTTTAGCAAATTTCACTTCGTTGAAATAATTTTTGTAGTTTCACGGTCGTTTTGATACCCATATTGACCCTATTCGGTGAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCACAAAATTTGGAAGTATAGGCAATATGGGTATCAAAATGACGGAAATCTCGTGGGTAACATTTCTAACAAAATGAAAAGTTGAAAAACTGGCAAATAGAAACAAATTGCCAAAAAATTCAAAAAAAAATATTTTTCCAATTTTGAAGTTTTCACATTTTCAGACTCCATGATCATT</canonical>
            <polymorphic>AAAGTTGAAAAAGTAAGAAATTCCATTTATTTTTCTATAAAATAAGAAAAAATCATTTGTTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCAWATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAACCCGAAAAGCATTTTTAGCAAATTTCACTTCGTTGAAATAATTTTTGTAGTTTCACGGTCGTTTTGATACCCATATTGACCCTATTCGGTGAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCACAAAATTTGGAAGTATAGGCAATATGGGTATCAAAATGACGGAAATCTCGTGGGTAACATTTCTAACAAAATGAAAAGTTGAAAAACTGGCAAATAGAAACAAATTGCCAAAAAATTCAAAAAAAAATATTTTTCCAATTTTGAAGTTTTCACATTTTCAGACTCCATGATCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTATTCGAGCATTTTACCTA</pcr_primer_p1>
		<pcr_primer_p2>TCGAGAATTGCTTTTAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>879</pcr_amplicon_size>
		<canonical_amplicon>TCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTA</canonical_amplicon>
		<polymorphic_amplicon>TCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCAWATTCGGGATGGTTCGATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29903</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>411198</contig_pos>
        <strand></strand>
        <context>rwattcggga[T/A]grttcgattt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGA</left_flank>
        <right_flank>GGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAAC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGTAAGAAATTCCATTTATTTTTCTATAAAATAAGAAAAAATCATTTGTTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAACCCGAAAAGCATTTTTAGCAAATTTCACTTCGTTGAAATAATTTTTGTAGTTTCACGGTCGTTTTGATACCCATATTGACCCTATTCGGTGAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCACAAAATTTGGAAGTATAGGCAATATGGGTATCAAAATGACGGAAATCTCGTGGGTAACATTTCTAACAAAATGAAAAGTTGAAAAACTGGCAAATAGAAACAAATTGCCAAAAAATTCAAAAAAAAATATTTTTCCAATTTTGAAGTTTTCACATTTTCAGACTCCATGATCATTTCAAGCAAA</canonical>
            <polymorphic>AAAGTAAGAAATTCCATTTATTTTTCTATAAAATAAGAAAAAATCATTTGTTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGAWGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAACCCGAAAAGCATTTTTAGCAAATTTCACTTCGTTGAAATAATTTTTGTAGTTTCACGGTCGTTTTGATACCCATATTGACCCTATTCGGTGAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCACAAAATTTGGAAGTATAGGCAATATGGGTATCAAAATGACGGAAATCTCGTGGGTAACATTTCTAACAAAATGAAAAGTTGAAAAACTGGCAAATAGAAACAAATTGCCAAAAAATTCAAAAAAAAATATTTTTCCAATTTTGAAGTTTTCACATTTTCAGACTCCATGATCATTTCAAGCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>XcmI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATTATTCGAGCATTTTACCTA</pcr_primer_p1>
		<pcr_primer_p2>TCGAGAATTGCTTTTAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>879</pcr_amplicon_size>
		<canonical_amplicon>TCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTT</canonical_amplicon>
		<polymorphic_amplicon>TCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGAWGGTTCGATTTATGACGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29904</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>411200</contig_pos>
        <strand></strand>
        <context>attcgggawg[G/A]ttcgatttwt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATG</left_flank>
        <right_flank>TTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTAAGAAATTCCATTTATTTTTCTATAAAATAAGAAAAAATCATTTGTTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAACCCGAAAAGCATTTTTAGCAAATTTCACTTCGTTGAAATAATTTTTGTAGTTTCACGGTCGTTTTGATACCCATATTGACCCTATTCGGTGAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCACAAAATTTGGAAGTATAGGCAATATGGGTATCAAAATGACGGAAATCTCGTGGGTAACATTTCTAACAAAATGAAAAGTTGAAAAACTGGCAAATAGAAACAAATTGCCAAAAAATTCAAAAAAAAATATTTTTCCAATTTTGAAGTTTTCACATTTTCAGACTCCATGATCATTTCAAGCAAATT</canonical>
            <polymorphic>AGTAAGAAATTCCATTTATTTTTCTATAAAATAAGAAAAAATCATTTGTTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGRTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAACCCGAAAAGCATTTTTAGCAAATTTCACTTCGTTGAAATAATTTTTGTAGTTTCACGGTCGTTTTGATACCCATATTGACCCTATTCGGTGAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCACAAAATTTGGAAGTATAGGCAATATGGGTATCAAAATGACGGAAATCTCGTGGGTAACATTTCTAACAAAATGAAAAGTTGAAAAACTGGCAAATAGAAACAAATTGCCAAAAAATTCAAAAAAAAATATTTTTCCAATTTTGAAGTTTTCACATTTTCAGACTCCATGATCATTTCAAGCAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>XcmI</enzyme>
                </isoschizomers>
                <canonical_bands>507 493</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATTATTCGAGCATTTTACCTA</pcr_primer_p1>
		<pcr_primer_p2>TCGAGAATTGCTTTTAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>879</pcr_amplicon_size>
		<canonical_amplicon>TCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCT</canonical_amplicon>
		<polymorphic_amplicon>TCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGRTTCGATTTATGACGTCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29905</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>411209</contig_pos>
        <strand></strand>
        <context>grttcgattt[A/T]tgacgtcttc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTT</left_flank>
        <right_flank>TGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCATTTATTTTTCTATAAAATAAGAAAAAATCATTTGTTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAACCCGAAAAGCATTTTTAGCAAATTTCACTTCGTTGAAATAATTTTTGTAGTTTCACGGTCGTTTTGATACCCATATTGACCCTATTCGGTGAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCACAAAATTTGGAAGTATAGGCAATATGGGTATCAAAATGACGGAAATCTCGTGGGTAACATTTCTAACAAAATGAAAAGTTGAAAAACTGGCAAATAGAAACAAATTGCCAAAAAATTCAAAAAAAAATATTTTTCCAATTTTGAAGTTTTCACATTTTCAGACTCCATGATCATTTCAAGCAAATTTCGCTTCGT</canonical>
            <polymorphic>TTCCATTTATTTTTCTATAAAATAAGAAAAAATCATTTGTTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTWTGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAACCCGAAAAGCATTTTTAGCAAATTTCACTTCGTTGAAATAATTTTTGTAGTTTCACGGTCGTTTTGATACCCATATTGACCCTATTCGGTGAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCACAAAATTTGGAAGTATAGGCAATATGGGTATCAAAATGACGGAAATCTCGTGGGTAACATTTCTAACAAAATGAAAAGTTGAAAAACTGGCAAATAGAAACAAATTGCCAAAAAATTCAAAAAAAAATATTTTTCCAATTTTGAAGTTTTCACATTTTCAGACTCCATGATCATTTCAAGCAAATTTCGCTTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTATTCGAGCATTTTACCTA</pcr_primer_p1>
		<pcr_primer_p2>TCGAGAATTGCTTTTAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>879</pcr_amplicon_size>
		<canonical_amplicon>TCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGA</canonical_amplicon>
		<polymorphic_amplicon>TCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTWTGACGTCTTCTGACTTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29906</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>411223</contig_pos>
        <strand></strand>
        <context>cgtcttctga[C/A]ttcagaattc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGA</left_flank>
        <right_flank>TTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATAAAATAAGAAAAAATCATTTGTTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAACCCGAAAAGCATTTTTAGCAAATTTCACTTCGTTGAAATAATTTTTGTAGTTTCACGGTCGTTTTGATACCCATATTGACCCTATTCGGTGAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCACAAAATTTGGAAGTATAGGCAATATGGGTATCAAAATGACGGAAATCTCGTGGGTAACATTTCTAACAAAATGAAAAGTTGAAAAACTGGCAAATAGAAACAAATTGCCAAAAAATTCAAAAAAAAATATTTTTCCAATTTTGAAGTTTTCACATTTTCAGACTCCATGATCATTTCAAGCAAATTTCGCTTCGTTAAAACGATTTTCT</canonical>
            <polymorphic>CTATAAAATAAGAAAAAATCATTTGTTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGAMTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAACCCGAAAAGCATTTTTAGCAAATTTCACTTCGTTGAAATAATTTTTGTAGTTTCACGGTCGTTTTGATACCCATATTGACCCTATTCGGTGAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCACAAAATTTGGAAGTATAGGCAATATGGGTATCAAAATGACGGAAATCTCGTGGGTAACATTTCTAACAAAATGAAAAGTTGAAAAACTGGCAAATAGAAACAAATTGCCAAAAAATTCAAAAAAAAATATTTTTCCAATTTTGAAGTTTTCACATTTTCAGACTCCATGATCATTTCAAGCAAATTTCGCTTCGTTAAAACGATTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTATTCGAGCATTTTACCTA</pcr_primer_p1>
		<pcr_primer_p2>TCGAGAATTGCTTTTAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>879</pcr_amplicon_size>
		<canonical_amplicon>TCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTG</canonical_amplicon>
		<polymorphic_amplicon>TCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGAMTTCAGAATTCACGAAATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29907</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>411236</contig_pos>
        <strand></strand>
        <context>cagaattcac[G/A]aaatttggaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCAC</left_flank>
        <right_flank>AAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATCATTTGTTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAACCCGAAAAGCATTTTTAGCAAATTTCACTTCGTTGAAATAATTTTTGTAGTTTCACGGTCGTTTTGATACCCATATTGACCCTATTCGGTGAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCACAAAATTTGGAAGTATAGGCAATATGGGTATCAAAATGACGGAAATCTCGTGGGTAACATTTCTAACAAAATGAAAAGTTGAAAAACTGGCAAATAGAAACAAATTGCCAAAAAATTCAAAAAAAAATATTTTTCCAATTTTGAAGTTTTCACATTTTCAGACTCCATGATCATTTCAAGCAAATTTCGCTTCGTTAAAACGATTTTCTGTATTTTTATGAT</canonical>
            <polymorphic>AAAAATCATTTGTTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACRAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAACCCGAAAAGCATTTTTAGCAAATTTCACTTCGTTGAAATAATTTTTGTAGTTTCACGGTCGTTTTGATACCCATATTGACCCTATTCGGTGAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCACAAAATTTGGAAGTATAGGCAATATGGGTATCAAAATGACGGAAATCTCGTGGGTAACATTTCTAACAAAATGAAAAGTTGAAAAACTGGCAAATAGAAACAAATTGCCAAAAAATTCAAAAAAAAATATTTTTCCAATTTTGAAGTTTTCACATTTTCAGACTCCATGATCATTTCAAGCAAATTTCGCTTCGTTAAAACGATTTTCTGTATTTTTATGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>503 295 162 40</canonical_bands>
                <polymorphic_bands>543 295 162</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATTATTCGAGCATTTTACCTA</pcr_primer_p1>
		<pcr_primer_p2>TCGAGAATTGCTTTTAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>879</pcr_amplicon_size>
		<canonical_amplicon>TCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAA</canonical_amplicon>
		<polymorphic_amplicon>TCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACRAAATTTGGAAACATAGGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29908</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>411247</contig_pos>
        <strand></strand>
        <context>aaatttggaa[A/G]yataggcaak</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAA</left_flank>
        <right_flank>CATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTC</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAACCCGAAAAGCATTTTTAGCAAATTTCACTTCGTTGAAATAATTTTTGTAGTTTCACGGTCGTTTTGATACCCATATTGACCCTATTCGGTGAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCACAAAATTTGGAAGTATAGGCAATATGGGTATCAAAATGACGGAAATCTCGTGGGTAACATTTCTAACAAAATGAAAAGTTGAAAAACTGGCAAATAGAAACAAATTGCCAAAAAATTCAAAAAAAAATATTTTTCCAATTTTGAAGTTTTCACATTTTCAGACTCCATGATCATTTCAAGCAAATTTCGCTTCGTTAAAACGATTTTCTGTATTTTTATGATCATTTTGATAC</canonical>
            <polymorphic>GTTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAARCATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAACCCGAAAAGCATTTTTAGCAAATTTCACTTCGTTGAAATAATTTTTGTAGTTTCACGGTCGTTTTGATACCCATATTGACCCTATTCGGTGAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCACAAAATTTGGAAGTATAGGCAATATGGGTATCAAAATGACGGAAATCTCGTGGGTAACATTTCTAACAAAATGAAAAGTTGAAAAACTGGCAAATAGAAACAAATTGCCAAAAAATTCAAAAAAAAATATTTTTCCAATTTTGAAGTTTTCACATTTTCAGACTCCATGATCATTTCAAGCAAATTTCGCTTCGTTAAAACGATTTTCTGTATTTTTATGATCATTTTGATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTATTCGAGCATTTTACCTA</pcr_primer_p1>
		<pcr_primer_p2>TCGAGAATTGCTTTTAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>879</pcr_amplicon_size>
		<canonical_amplicon>TCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCA</canonical_amplicon>
		<polymorphic_amplicon>TCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAARCATAGGCAAGATGGGTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29909</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>411248</contig_pos>
        <strand></strand>
        <context>aatttggaar[C/T]ataggcaaka</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAA</left_flank>
        <right_flank>ATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCT</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAACCCGAAAAGCATTTTTAGCAAATTTCACTTCGTTGAAATAATTTTTGTAGTTTCACGGTCGTTTTGATACCCATATTGACCCTATTCGGTGAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCACAAAATTTGGAAGTATAGGCAATATGGGTATCAAAATGACGGAAATCTCGTGGGTAACATTTCTAACAAAATGAAAAGTTGAAAAACTGGCAAATAGAAACAAATTGCCAAAAAATTCAAAAAAAAATATTTTTCCAATTTTGAAGTTTTCACATTTTCAGACTCCATGATCATTTCAAGCAAATTTCGCTTCGTTAAAACGATTTTCTGTATTTTTATGATCATTTTGATACT</canonical>
            <polymorphic>TTAATGTCTTCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAAYATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAACCCGAAAAGCATTTTTAGCAAATTTCACTTCGTTGAAATAATTTTTGTAGTTTCACGGTCGTTTTGATACCCATATTGACCCTATTCGGTGAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCACAAAATTTGGAAGTATAGGCAATATGGGTATCAAAATGACGGAAATCTCGTGGGTAACATTTCTAACAAAATGAAAAGTTGAAAAACTGGCAAATAGAAACAAATTGCCAAAAAATTCAAAAAAAAATATTTTTCCAATTTTGAAGTTTTCACATTTTCAGACTCCATGATCATTTCAAGCAAATTTCGCTTCGTTAAAACGATTTTCTGTATTTTTATGATCATTTTGATACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTATTCGAGCATTTTACCTA</pcr_primer_p1>
		<pcr_primer_p2>TCGAGAATTGCTTTTAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>879</pcr_amplicon_size>
		<canonical_amplicon>TCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAA</canonical_amplicon>
		<polymorphic_amplicon>TCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAAYATAGGCAAGATGGGTATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29910</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>411257</contig_pos>
        <strand></strand>
        <context>ryataggcaa[G/T]atgggtatca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAA</left_flank>
        <right_flank>ATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAACCCGAAAAGCATTTTTAGCAAATTTCACTTCGTTGAAATAATTTTTGTAGTTTCACGGTCGTTTTGATACCCATATTGACCCTATTCGGTGAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCACAAAATTTGGAAGTATAGGCAATATGGGTATCAAAATGACGGAAATCTCGTGGGTAACATTTCTAACAAAATGAAAAGTTGAAAAACTGGCAAATAGAAACAAATTGCCAAAAAATTCAAAAAAAAATATTTTTCCAATTTTGAAGTTTTCACATTTTCAGACTCCATGATCATTTCAAGCAAATTTCGCTTCGTTAAAACGATTTTCTGTATTTTTATGATCATTTTGATACTAAATTTGAC</canonical>
            <polymorphic>TCGTTGGTCGTCAGAAGGAGAGAGAAAATCGATTTTCAAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAKATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAACCCGAAAAGCATTTTTAGCAAATTTCACTTCGTTGAAATAATTTTTGTAGTTTCACGGTCGTTTTGATACCCATATTGACCCTATTCGGTGAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCACAAAATTTGGAAGTATAGGCAATATGGGTATCAAAATGACGGAAATCTCGTGGGTAACATTTCTAACAAAATGAAAAGTTGAAAAACTGGCAAATAGAAACAAATTGCCAAAAAATTCAAAAAAAAATATTTTTCCAATTTTGAAGTTTTCACATTTTCAGACTCCATGATCATTTCAAGCAAATTTCGCTTCGTTAAAACGATTTTCTGTATTTTTATGATCATTTTGATACTAAATTTGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATNNNNATC</site>
                <isoschizomers>
                    <enzyme>BsaBI</enzyme>
                    <enzyme>Bse8I</enzyme>
                    <enzyme>BseJI</enzyme>
                    <enzyme>BsiBI</enzyme>
                    <enzyme>BsrBRI</enzyme>
                    <enzyme>MamI</enzyme>
                </isoschizomers>
                <canonical_bands>496 304 200</canonical_bands>
                <polymorphic_bands>696 304</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATTATTCGAGCATTTTACCTA</pcr_primer_p1>
		<pcr_primer_p2>TCGAGAATTGCTTTTAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>879</pcr_amplicon_size>
		<canonical_amplicon>TCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGA</canonical_amplicon>
		<polymorphic_amplicon>TCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAKATGGGTATCAAAATGACGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29911</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>411294</contig_pos>
        <strand></strand>
        <context>aaggttaaca[A/T]ttctaacaam</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACA</left_flank>
        <right_flank>TTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAACCCGAAAAGCATTTTTAGCAAATTTCACTTCGTTGAAATAATTTTTGTAGTTTCACGGTCGTTTTGATACCCATATTGACCCTATTCGGTGAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCACAAAATTTGGAAGTATAGGCAATATGGGTATCAAAATGACGGAAATCTCGTGGGTAACATTTCTAACAAAATGAAAAGTTGAAAAACTGGCAAATAGAAACAAATTGCCAAAAAATTCAAAAAAAAATATTTTTCCAATTTTGAAGTTTTCACATTTTCAGACTCCATGATCATTTCAAGCAAATTTCGCTTCGTTAAAACGATTTTCTGTATTTTTATGATCATTTTGATACTAAATTTGACCCGATTCGGAAAGATTCGAATTTTGACGTCTTCTGAA</canonical>
            <polymorphic>AAGTCGCCTTCAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAWTTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAACCCGAAAAGCATTTTTAGCAAATTTCACTTCGTTGAAATAATTTTTGTAGTTTCACGGTCGTTTTGATACCCATATTGACCCTATTCGGTGAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCACAAAATTTGGAAGTATAGGCAATATGGGTATCAAAATGACGGAAATCTCGTGGGTAACATTTCTAACAAAATGAAAAGTTGAAAAACTGGCAAATAGAAACAAATTGCCAAAAAATTCAAAAAAAAATATTTTTCCAATTTTGAAGTTTTCACATTTTCAGACTCCATGATCATTTCAAGCAAATTTCGCTTCGTTAAAACGATTTTCTGTATTTTTATGATCATTTTGATACTAAATTTGACCCGATTCGGAAAGATTCGAATTTTGACGTCTTCTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>99 84 81 80 59 59 55 53 49 46 38 35 30 26 23 19 19 19 17 16 11 11 11 9 9 8 8 7 7 6 6</canonical_bands>
                <polymorphic_bands>114 99 84 81 80 59 53 49 46 38 35 30 26 23 19 19 19 17 16 11 11 11 9 9 8 8 7 7 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATTATTCGAGCATTTTACCTA</pcr_primer_p1>
		<pcr_primer_p2>TCGAGAATTGCTTTTAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>879</pcr_amplicon_size>
		<canonical_amplicon>TCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAWTTCTAACAACATGGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29912</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>411304</contig_pos>
        <strand></strand>
        <context>wttctaacaa[C/A]atggaaaaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAA</left_flank>
        <right_flank>ATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAAT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAACCCGAAAAGCATTTTTAGCAAATTTCACTTCGTTGAAATAATTTTTGTAGTTTCACGGTCGTTTTGATACCCATATTGACCCTATTCGGTGAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCACAAAATTTGGAAGTATAGGCAATATGGGTATCAAAATGACGGAAATCTCGTGGGTAACATTTCTAACAAAATGAAAAGTTGAAAAACTGGCAAATAGAAACAAATTGCCAAAAAATTCAAAAAAAAATATTTTTCCAATTTTGAAGTTTTCACATTTTCAGACTCCATGATCATTTCAAGCAAATTTCGCTTCGTTAAAACGATTTTCTGTATTTTTATGATCATTTTGATACTAAATTTGACCCGATTCGGAAAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTC</canonical>
            <polymorphic>CAGCTGAATTGTGATGTCGCCCATTTGGGAGCCAGCCTGGAAAAAATTTAAATTTTTAAATTTTTTTGAAATTTTTAAAAAATTTCAAAATCTCAAGAAATACCTTAAACGGAGCCCATGGCTCAATCTCATCGGCAGGAACTTCTGCCCAAAGAACTGCCAATTTATCGTCTTTTGCTGGTCCATCCAAACGAAGAATTTCCAATTTTGTACGCCCTTTTATTTCCAAAAATCCAAACACTGGACGAACACGATACTGATCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAAMATGGAAAAATGGAAAAGCGCAAAATCGGAAAAAATCTAAAAAATGATAATTTGAATTTTTTTTATTTTTCTATTTCTTTTAACCCGAAAAGCATTTTTAGCAAATTTCACTTCGTTGAAATAATTTTTGTAGTTTCACGGTCGTTTTGATACCCATATTGACCCTATTCGGTGAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTCACAAAATTTGGAAGTATAGGCAATATGGGTATCAAAATGACGGAAATCTCGTGGGTAACATTTCTAACAAAATGAAAAGTTGAAAAACTGGCAAATAGAAACAAATTGCCAAAAAATTCAAAAAAAAATATTTTTCCAATTTTGAAGTTTTCACATTTTCAGACTCCATGATCATTTCAAGCAAATTTCGCTTCGTTAAAACGATTTTCTGTATTTTTATGATCATTTTGATACTAAATTTGACCCGATTCGGAAAGATTCGAATTTTGACGTCTTCTGAATTCAGAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>376 195 188 124 117</canonical_bands>
                <polymorphic_bands>571 188 124 117</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATTATTCGAGCATTTTACCTA</pcr_primer_p1>
		<pcr_primer_p2>TCGAGAATTGCTTTTAAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>879</pcr_amplicon_size>
		<canonical_amplicon>TCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAACATGGAAAAATGGAAAAGCGC</canonical_amplicon>
		<polymorphic_amplicon>TCATTATTCGAGCATTTTACCTAAATTTTGGAATTTTCAGACTCCATGATCGTTTTAAGCAAATTTCACATCGTTAAAACAATTTCCTACAGTTTTTCGGTCATTTTGATACCAATATTGACCATATTCGGGATGGTTCGATTTATGACGTCTTCTGACTTCAGAATTCACGAAATTTGGAAACATAGGCAAGATGGGTATCAAAATGACGGAAATCGCAAGGTTAACAATTCTAACAAMATGGAAAAATGGAAAAGCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29913</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>413419</contig_pos>
        <strand></strand>
        <context>aaatgtttat[T/C]ataatatcag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCGGTTACTGAAAGAGATATCGGAATTTTGTTAACTGATAAAATGTTTAT</left_flank>
        <right_flank>ATAATATCAGCAATAATTTATTAGTTAACTACTTTTTGATATCTCTGATA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCAAACTCCCAGTTGGATTCATTGACCCAACAGATGTATTCGAAATTGAAGTTTGGCATGTTCCTGGTCTTTTGGTCCCGAAAAATGATTATCATCATTTTTCTGTCTATCATATCAAGTGTGATAAGAATGCGGTGGTAAGGAAAATTTTAAGCTTCAAAATAAATTTGGCCTGGCGCGAAATTCAAAAAGTTTAAAAATTTCGATTTTTCGAATTTTTTCCGAAAAAATTCCATACTTGCACTTTGAGCTCAATTATCTCAATTTCTAAAAAAGTAATTATAAAGTAGTTAACTGATACAATGTATATCATAACATTTTACGCATTTCATTAGTTTTCAAATTTTAGTTAGCGTTTATGGTTTTTGAGATATGCGCCTTTAAATTTGGAGGCGCCCCTCGATTCTCCGTGAAGGATGCCCATTGTTAACTTTGAGGTTGATTATCTCGGTTACTGAAAGAGATATCGGAATTTTGTTAACTGATAAAATGTTTATTATAATATCAGCAATAATTTATTAGTTAACTACTTTTTGATATCTCTGATAGCAACCGAGATAACGGAGCTGAAAGTTGGGGTGACGATTTTTTGTAAGATTTTTTTTGTTGATATTTTAAAATTTCAAATTTTCAGGACTTTCATCCAATCTGGAAATCTAAGAAACCGGACGGCTGTGCCAATTCGATTTCCAGATTATCGATTGGTCCCAAAATTCGATCCGCCGAAGAAAAAGGGAATTCACGAAGACAAAAAATTGGAAAATCAAAAGGGAAAAAACAAGAAAAATGATGGAAAAAAGATGCCGGAAAAGAAGACGTCGGACGACGGCAAAAAAGGTTTTTTTCAGAATTTTAAAATCCAAATTCTGAACAAATTTTTTTCAGAAGACGTCAACGGCGTCGGAGAATCCTCTGAAGAAGTAATTCCTCAAGATCTCTCGATATCGAGGAAAAGGGTTTTTAAAAAATCATCAATCAGTTTTTCATCCCTAATTTTT</canonical>
            <polymorphic>TATCAAACTCCCAGTTGGATTCATTGACCCAACAGATGTATTCGAAATTGAAGTTTGGCATGTTCCTGGTCTTTTGGTCCCGAAAAATGATTATCATCATTTTTCTGTCTATCATATCAAGTGTGATAAGAATGCGGTGGTAAGGAAAATTTTAAGCTTCAAAATAAATTTGGCCTGGCGCGAAATTCAAAAAGTTTAAAAATTTCGATTTTTCGAATTTTTTCCGAAAAAATTCCATACTTGCACTTTGAGCTCAATTATCTCAATTTCTAAAAAAGTAATTATAAAGTAGTTAACTGATACAATGTATATCATAACATTTTACGCATTTCATTAGTTTTCAAATTTTAGTTAGCGTTTATGGTTTTTGAGATATGCGCCTTTAAATTTGGAGGCGCCCCTCGATTCTCCGTGAAGGATGCCCATTGTTAACTTTGAGGTTGATTATCTCGGTTACTGAAAGAGATATCGGAATTTTGTTAACTGATAAAATGTTTATYATAATATCAGCAATAATTTATTAGTTAACTACTTTTTGATATCTCTGATAGCAACCGAGATAACGGAGCTGAAAGTTGGGGTGACGATTTTTTGTAAGATTTTTTTTGTTGATATTTTAAAATTTCAAATTTTCAGGACTTTCATCCAATCTGGAAATCTAAGAAACCGGACGGCTGTGCCAATTCGATTTCCAGATTATCGATTGGTCCCAAAATTCGATCCGCCGAAGAAAAAGGGAATTCACGAAGACAAAAAATTGGAAAATCAAAAGGGAAAAAACAAGAAAAATGATGGAAAAAAGATGCCGGAAAAGAAGACGTCGGACGACGGCAAAAAAGGTTTTTTTCAGAATTTTAAAATCCAAATTCTGAACAAATTTTTTTCAGAAGACGTCAACGGCGTCGGAGAATCCTCTGAAGAAGTAATTCCTCAAGATCTCTCGATATCGAGGAAAAGGGTTTTTAAAAAATCATCAATCAGTTTTTCATCCCTAATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>499 284 217</canonical_bands>
                <polymorphic_bands>716 284</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCGATTTTTCGAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTCCAGATTGGATGAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>456</pcr_amplicon_size>
		<canonical_amplicon>TTTCGATTTTTCGAATTTTTTCCGAAAAAATTCCATACTTGCACTTTGAGCTCAATTATCTCAATTTCTAAAAAAGTAATTATAAAGTAGTTAACTGATACAATGTATATCATAACATTTTACGCATTTCATTAGTTTTCAAATTTTAGTTAGCGTTTATGGTTTTTGAGATATGCGCCTTTAAATTTGGAGGCGCCCCTCGATTCTCCGTGAAGGATGCCCATTGTTAACTTTGAGGTTGATTATCTCGGTTACTGAAAGAGATATCGGAATTTTGTTAACTGATAAAATGTTTATTATAATATCAGCAATAATTTATTAGTTAACTACTTTTTGATATCTCTGATAGCAACCGAGATAACGGAGCTGAAAGTTGGGGTGACGATTTTTTGTAAGATTTTTTTTGTTGATATTTTAAAATTTCAAATTTTCAGGACTTTCATCCAATCTGGAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCGATTTTTCGAATTTTTTCCGAAAAAATTCCATACTTGCACTTTGAGCTCAATTATCTCAATTTCTAAAAAAGTAATTATAAAGTAGTTAACTGATACAATGTATATCATAACATTTTACGCATTTCATTAGTTTTCAAATTTTAGTTAGCGTTTATGGTTTTTGAGATATGCGCCTTTAAATTTGGAGGCGCCCCTCGATTCTCCGTGAAGGATGCCCATTGTTAACTTTGAGGTTGATTATCTCGGTTACTGAAAGAGATATCGGAATTTTGTTAACTGATAAAATGTTTATYATAATATCAGCAATAATTTATTAGTTAACTACTTTTTGATATCTCTGATAGCAACCGAGATAACGGAGCTGAAAGTTGGGGTGACGATTTTTTGTAAGATTTTTTTTGTTGATATTTTAAAATTTCAAATTTTCAGGACTTTCATCCAATCTGGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29914</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>413552</contig_pos>
        <strand>+</strand>
        <context>TTTCAAATTT[A/G]CAGGACTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACGATTTTTTGTAAGATTTTTTTTGTTGATATTTTAAAATTTCAAATTT</left_flank>
        <right_flank>CAGGACTTTCATCCAATCTGGAAATCTAAGAAACCGGACGGCTGTGCCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGGTGGTAAGGAAAATTTTAAGCTTCAAAATAAATTTGGCCTGGCGCGAAATTCAAAAAGTTTAAAAATTTCGATTTTTCGAATTTTTTCCGAAAAAATTCCATACTTGCACTTTGAGCTCAATTATCTCAATTTCTAAAAAAGTAATTATAAAGTAGTTAACTGATACAATGTATATCATAACATTTTACGCATTTCATTAGTTTTCAAATTTTAGTTAGCGTTTATGGTTTTTGAGATATGCGCCTTTAAATTTGGAGGCGCCCCTCGATTCTCCGTGAAGGATGCCCATTGTTAACTTTGAGGTTGATTATCTCGGTTACTGAAAGAGATATCGGAATTTTGTTAACTGATAAAATGTTTATTATAATATCAGCAATAATTTATTAGTTAACTACTTTTTGATATCTCTGATAGCAACCGAGATAACGGAGCTGAAAGTTGGGGTGACGATTTTTTGTAAGATTTTTTTTGTTGATATTTTAAAATTTCAAATTTTCAGGACTTTCATCCAATCTGGAAATCTAAGAAACCGGACGGCTGTGCCAATTCGATTTCCAGATTATCGATTGGTCCCAAAATTCGATCCGCCGAAGAAAAAGGGAATTCACGAAGACAAAAAATTGGAAAATCAAAAGGGAAAAAACAAGAAAAATGATGGAAAAAAGATGCCGGAAAAGAAGACGTCGGACGACGGCAAAAAAGGTTTTTTTCAGAATTTTAAAATCCAAATTCTGAACAAATTTTTTTCAGAAGACGTCAACGGCGTCGGAGAATCCTCTGAAGAAGTAATTCCTCAAGATCTCTCGATATCGAGGAAAAGGGTTTTTAAAAAATCATCAATCAGTTTTTCATCCCTAATTTTTTTGGAAGTTTTGATTTTTGAAAAAAAAAATCAAAAATTCCAAAATAAATGAAGGAATATTATTGTAACTTTTTATTTGGGTGGAATAAATGAATTTATTTCCTTGTTGTTGGAATTGTTACCCATCGAATTCC</canonical>
            <polymorphic>GCGGTGGTAAGGAAAATTTTAAGCTTCAAAATAAATTTGGCCTGGCGCGAAATTCAAAAAGTTTAAAAATTTCGATTTTTCGAATTTTTTCCGAAAAAATTCCATACTTGCACTTTGAGCTCAATTATCTCAATTTCTAAAAAAGTAATTATAAAGTAGTTAACTGATACAATGTATATCATAACATTTTACGCATTTCATTAGTTTTCAAATTTTAGTTAGCGTTTATGGTTTTTGAGATATGCGCCTTTAAATTTGGAGGCGCCCCTCGATTCTCCGTGAAGGATGCCCATTGTTAACTTTGAGGTTGATTATCTCGGTTACTGAAAGAGATATCGGAATTTTGTTAACTGATAAAATGTTTATTATAATATCAGCAATAATTTATTAGTTAACTACTTTTTGATATCTCTGATAGCAACCGAGATAACGGAGCTGAAAGTTGGGGTGACGATTTTTTGTAAGATTTTTTTTGTTGATATTTTAAAATTTCAAATTTRCAGGACTTTCATCCAATCTGGAAATCTAAGAAACCGGACGGCTGTGCCAATTCGATTTCCAGATTATCGATTGGTCCCAAAATTCGATCCGCCGAAGAAAAAGGGAATTCACGAAGACAAAAAATTGGAAAATCAAAAGGGAAAAAACAAGAAAAATGATGGAAAAAAGATGCCGGAAAAGAAGACGTCGGACGACGGCAAAAAAGGTTTTTTTCAGAATTTTAAAATCCAAATTCTGAACAAATTTTTTTCAGAAGACGTCAACGGCGTCGGAGAATCCTCTGAAGAAGTAATTCCTCAAGATCTCTCGATATCGAGGAAAAGGGTTTTTAAAAAATCATCAATCAGTTTTTCATCCCTAATTTTTTTGGAAGTTTTGATTTTTGAAAAAAAAAATCAAAAATTCCAAAATAAATGAAGGAATATTATTGTAACTTTTTATTTGGGTGGAATAAATGAATTTATTTCCTTGTTGTTGGAATTGTTACCCATCGAATTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>501 193 189 51 41 17 8</canonical_bands>
                <polymorphic_bands>518 193 189 51 41 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCGATTTTTCGAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTGATTTTCCAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>571</pcr_amplicon_size>
		<canonical_amplicon>TTTCGATTTTTCGAATTTTTTCCGAAAAAATTCCATACTTGCACTTTGAGCTCAATTATCTCAATTTCTAAAAAAGTAATTATAAAGTAGTTAACTGATACAATGTATATCATAACATTTTACGCATTTCATTAGTTTTCAAATTTTAGTTAGCGTTTATGGTTTTTGAGATATGCGCCTTTAAATTTGGAGGCGCCCCTCGATTCTCCGTGAAGGATGCCCATTGTTAACTTTGAGGTTGATTATCTCGGTTACTGAAAGAGATATCGGAATTTTGTTAACTGATAAAATGTTTATTATAATATCAGCAATAATTTATTAGTTAACTACTTTTTGATATCTCTGATAGCAACCGAGATAACGGAGCTGAAAGTTGGGGTGACGATTTTTTGTAAGATTTTTTTTGTTGATATTTTAAAATTTCAAATTTTCAGGACTTTCATCCAATCTGGAAATCTAAGAAACCGGACGGCTGTGCCAATTCGATTTCCAGATTATCGATTGGTCCCAAAATTCGATCCGCCGAAGAAAAAGGGAATTCACGAAGACAAAAAATTGGAAAATCAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>TTTCGATTTTTCGAATTTTTTCCGAAAAAATTCCATACTTGCACTTTGAGCTCAATTATCTCAATTTCTAAAAAAGTAATTATAAAGTAGTTAACTGATACAATGTATATCATAACATTTTACGCATTTCATTAGTTTTCAAATTTTAGTTAGCGTTTATGGTTTTTGAGATATGCGCCTTTAAATTTGGAGGCGCCCCTCGATTCTCCGTGAAGGATGCCCATTGTTAACTTTGAGGTTGATTATCTCGGTTACTGAAAGAGATATCGGAATTTTGTTAACTGATAAAATGTTTATTATAATATCAGCAATAATTTATTAGTTAACTACTTTTTGATATCTCTGATAGCAACCGAGATAACGGAGCTGAAAGTTGGGGTGACGATTTTTTGTAAGATTTTTTTTGTTGATATTTTAAAATTTCAAATTTRCAGGACTTTCATCCAATCTGGAAATCTAAGAAACCGGACGGCTGTGCCAATTCGATTTCCAGATTATCGATTGGTCCCAAAATTCGATCCGCCGAAGAAAAAGGGAATTCACGAAGACAAAAAATTGGAAAATCAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29915</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>413613</contig_pos>
        <strand>+</strand>
        <context>TTCGATTTCC[A/C]GATTATCGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCCAATCTGGAAATCTAAGAAACCGGACGGCTGTGCCAATTCGATTTCC</left_flank>
        <right_flank>GATTATCGATTGGTCCCAAAATTCGATCCGCCGAAGAAAAAGGGAATTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAAAAATTTCGATTTTTCGAATTTTTTCCGAAAAAATTCCATACTTGCACTTTGAGCTCAATTATCTCAATTTCTAAAAAAGTAATTATAAAGTAGTTAACTGATACAATGTATATCATAACATTTTACGCATTTCATTAGTTTTCAAATTTTAGTTAGCGTTTATGGTTTTTGAGATATGCGCCTTTAAATTTGGAGGCGCCCCTCGATTCTCCGTGAAGGATGCCCATTGTTAACTTTGAGGTTGATTATCTCGGTTACTGAAAGAGATATCGGAATTTTGTTAACTGATAAAATGTTTATTATAATATCAGCAATAATTTATTAGTTAACTACTTTTTGATATCTCTGATAGCAACCGAGATAACGGAGCTGAAAGTTGGGGTGACGATTTTTTGTAAGATTTTTTTTGTTGATATTTTAAAATTTCAAATTTTCAGGACTTTCATCCAATCTGGAAATCTAAGAAACCGGACGGCTGTGCCAATTCGATTTCCAGATTATCGATTGGTCCCAAAATTCGATCCGCCGAAGAAAAAGGGAATTCACGAAGACAAAAAATTGGAAAATCAAAAGGGAAAAAACAAGAAAAATGATGGAAAAAAGATGCCGGAAAAGAAGACGTCGGACGACGGCAAAAAAGGTTTTTTTCAGAATTTTAAAATCCAAATTCTGAACAAATTTTTTTCAGAAGACGTCAACGGCGTCGGAGAATCCTCTGAAGAAGTAATTCCTCAAGATCTCTCGATATCGAGGAAAAGGGTTTTTAAAAAATCATCAATCAGTTTTTCATCCCTAATTTTTTTGGAAGTTTTGATTTTTGAAAAAAAAAATCAAAAATTCCAAAATAAATGAAGGAATATTATTGTAACTTTTTATTTGGGTGGAATAAATGAATTTATTTCCTTGTTGTTGGAATTGTTACCCATCGAATTCCCGTCATTTTGATACCCATATTGCCTATATTTCCAAATTTTGTGAATTCTGAATTCAGAAGA</canonical>
            <polymorphic>TTTAAAAATTTCGATTTTTCGAATTTTTTCCGAAAAAATTCCATACTTGCACTTTGAGCTCAATTATCTCAATTTCTAAAAAAGTAATTATAAAGTAGTTAACTGATACAATGTATATCATAACATTTTACGCATTTCATTAGTTTTCAAATTTTAGTTAGCGTTTATGGTTTTTGAGATATGCGCCTTTAAATTTGGAGGCGCCCCTCGATTCTCCGTGAAGGATGCCCATTGTTAACTTTGAGGTTGATTATCTCGGTTACTGAAAGAGATATCGGAATTTTGTTAACTGATAAAATGTTTATTATAATATCAGCAATAATTTATTAGTTAACTACTTTTTGATATCTCTGATAGCAACCGAGATAACGGAGCTGAAAGTTGGGGTGACGATTTTTTGTAAGATTTTTTTTGTTGATATTTTAAAATTTCAAATTTTCAGGACTTTCATCCAATCTGGAAATCTAAGAAACCGGACGGCTGTGCCAATTCGATTTCCMGATTATCGATTGGTCCCAAAATTCGATCCGCCGAAGAAAAAGGGAATTCACGAAGACAAAAAATTGGAAAATCAAAAGGGAAAAAACAAGAAAAATGATGGAAAAAAGATGCCGGAAAAGAAGACGTCGGACGACGGCAAAAAAGGTTTTTTTCAGAATTTTAAAATCCAAATTCTGAACAAATTTTTTTCAGAAGACGTCAACGGCGTCGGAGAATCCTCTGAAGAAGTAATTCCTCAAGATCTCTCGATATCGAGGAAAAGGGTTTTTAAAAAATCATCAATCAGTTTTTCATCCCTAATTTTTTTGGAAGTTTTGATTTTTGAAAAAAAAAATCAAAAATTCCAAAATAAATGAAGGAATATTATTGTAACTTTTTATTTGGGTGGAATAAATGAATTTATTTCCTTGTTGTTGGAATTGTTACCCATCGAATTCCCGTCATTTTGATACCCATATTGCCTATATTTCCAAATTTTGTGAATTCTGAATTCAGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTCATCCAATCTGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTGTTCAGAATTTGGATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ACTTTCATCCAATCTGGAAATCTAAGAAACCGGACGGCTGTGCCAATTCGATTTCCAGATTATCGATTGGTCCCAAAATTCGATCCGCCGAAGAAAAAGGGAATTCACGAAGACAAAAAATTGGAAAATCAAAAGGGAAAAAACAAGAAAAATGATGGAAAAAAGATGCCGGAAAAGAAGACGTCGGACGACGGCAAAAAAGGTTTTTTTCAGAATTTTAAAATCCAAATTCTGAACAAAT</canonical_amplicon>
		<polymorphic_amplicon>ACTTTCATCCAATCTGGAAATCTAAGAAACCGGACGGCTGTGCCAATTCGATTTCCMGATTATCGATTGGTCCCAAAATTCGATCCGCCGAAGAAAAAGGGAATTCACGAAGACAAAAAATTGGAAAATCAAAAGGGAAAAAACAAGAAAAATGATGGAAAAAAGATGCCGGAAAAGAAGACGTCGGACGACGGCAAAAAAGGTTTTTTTCAGAATTTTAAAATCCAAATTCTGAACAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29916</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>413736</contig_pos>
        <strand>+</strand>
        <context>CGGAAAAGAA[A/G]ACGTCGGACG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAAAGGGAAAAAACAAGAAAAATGATGGAAAAAAGATGCCGGAAAAGAA</left_flank>
        <right_flank>ACGTCGGACGACGGCAAAAAAGGTTTTTTTCAGAATTTTAAAATCCAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTTACGCATTTCATTAGTTTTCAAATTTTAGTTAGCGTTTATGGTTTTTGAGATATGCGCCTTTAAATTTGGAGGCGCCCCTCGATTCTCCGTGAAGGATGCCCATTGTTAACTTTGAGGTTGATTATCTCGGTTACTGAAAGAGATATCGGAATTTTGTTAACTGATAAAATGTTTATTATAATATCAGCAATAATTTATTAGTTAACTACTTTTTGATATCTCTGATAGCAACCGAGATAACGGAGCTGAAAGTTGGGGTGACGATTTTTTGTAAGATTTTTTTTGTTGATATTTTAAAATTTCAAATTTTCAGGACTTTCATCCAATCTGGAAATCTAAGAAACCGGACGGCTGTGCCAATTCGATTTCCAGATTATCGATTGGTCCCAAAATTCGATCCGCCGAAGAAAAAGGGAATTCACGAAGACAAAAAATTGGAAAATCAAAAGGGAAAAAACAAGAAAAATGATGGAAAAAAGATGCCGGAAAAGAAGACGTCGGACGACGGCAAAAAAGGTTTTTTTCAGAATTTTAAAATCCAAATTCTGAACAAATTTTTTTCAGAAGACGTCAACGGCGTCGGAGAATCCTCTGAAGAAGTAATTCCTCAAGATCTCTCGATATCGAGGAAAAGGGTTTTTAAAAAATCATCAATCAGTTTTTCATCCCTAATTTTTTTGGAAGTTTTGATTTTTGAAAAAAAAAATCAAAAATTCCAAAATAAATGAAGGAATATTATTGTAACTTTTTATTTGGGTGGAATAAATGAATTTATTTCCTTGTTGTTGGAATTGTTACCCATCGAATTCCCGTCATTTTGATACCCATATTGCCTATATTTCCAAATTTTGTGAATTCTGAATTCAGAAGACGTCAAAATTCGAATCTCACCGAATAGGGTCGATATGGGTACCAAAATGACCGGAAAACTGCAGAAAGTTGTTTTAACAGAGAGAAATTTGCTTAAAATGTCTACAGAGGGACACAATTTCAC</canonical>
            <polymorphic>CATTTTACGCATTTCATTAGTTTTCAAATTTTAGTTAGCGTTTATGGTTTTTGAGATATGCGCCTTTAAATTTGGAGGCGCCCCTCGATTCTCCGTGAAGGATGCCCATTGTTAACTTTGAGGTTGATTATCTCGGTTACTGAAAGAGATATCGGAATTTTGTTAACTGATAAAATGTTTATTATAATATCAGCAATAATTTATTAGTTAACTACTTTTTGATATCTCTGATAGCAACCGAGATAACGGAGCTGAAAGTTGGGGTGACGATTTTTTGTAAGATTTTTTTTGTTGATATTTTAAAATTTCAAATTTTCAGGACTTTCATCCAATCTGGAAATCTAAGAAACCGGACGGCTGTGCCAATTCGATTTCCAGATTATCGATTGGTCCCAAAATTCGATCCGCCGAAGAAAAAGGGAATTCACGAAGACAAAAAATTGGAAAATCAAAAGGGAAAAAACAAGAAAAATGATGGAAAAAAGATGCCGGAAAAGAARACGTCGGACGACGGCAAAAAAGGTTTTTTTCAGAATTTTAAAATCCAAATTCTGAACAAATTTTTTTCAGAAGACGTCAACGGCGTCGGAGAATCCTCTGAAGAAGTAATTCCTCAAGATCTCTCGATATCGAGGAAAAGGGTTTTTAAAAAATCATCAATCAGTTTTTCATCCCTAATTTTTTTGGAAGTTTTGATTTTTGAAAAAAAAAATCAAAAATTCCAAAATAAATGAAGGAATATTATTGTAACTTTTTATTTGGGTGGAATAAATGAATTTATTTCCTTGTTGTTGGAATTGTTACCCATCGAATTCCCGTCATTTTGATACCCATATTGCCTATATTTCCAAATTTTGTGAATTCTGAATTCAGAAGACGTCAAAATTCGAATCTCACCGAATAGGGTCGATATGGGTACCAAAATGACCGGAAAACTGCAGAAAGTTGTTTTAACAGAGAGAAATTTGCTTAAAATGTCTACAGAGGGACACAATTTCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACGTC</site>
                <isoschizomers>
                    <enzyme>AatII</enzyme>
                    <enzyme>ZraI</enzyme>
                </isoschizomers>
                <canonical_bands>504 303 120 73</canonical_bands>
                <polymorphic_bands>577 303 120</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>423 294 123 78 73 9</canonical_bands>
                <polymorphic_bands>496 294 123 78 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTTCATCCAATCTGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTGTTCAGAATTTGGATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ACTTTCATCCAATCTGGAAATCTAAGAAACCGGACGGCTGTGCCAATTCGATTTCCAGATTATCGATTGGTCCCAAAATTCGATCCGCCGAAGAAAAAGGGAATTCACGAAGACAAAAAATTGGAAAATCAAAAGGGAAAAAACAAGAAAAATGATGGAAAAAAGATGCCGGAAAAGAAGACGTCGGACGACGGCAAAAAAGGTTTTTTTCAGAATTTTAAAATCCAAATTCTGAACAAAT</canonical_amplicon>
		<polymorphic_amplicon>ACTTTCATCCAATCTGGAAATCTAAGAAACCGGACGGCTGTGCCAATTCGATTTCCAGATTATCGATTGGTCCCAAAATTCGATCCGCCGAAGAAAAAGGGAATTCACGAAGACAAAAAATTGGAAAATCAAAAGGGAAAAAACAAGAAAAATGATGGAAAAAAGATGCCGGAAAAGAARACGTCGGACGACGGCAAAAAAGGTTTTTTTCAGAATTTTAAAATCCAAATTCTGAACAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29917</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>415385</contig_pos>
        <strand></strand>
        <context>CCCACTATTC[A/C]ACTCTCATAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTC</left_flank>
        <right_flank>ACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAAC</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACCGTATGAACCATAAGAATTTTGTACCATTAGAATTAAAAAAAATCTAAAATTTCAAGGTTCATCTTACTGTAGATTGTGTTTCCAAAGCTTTCGCCCCCTATTCTAAGACTTACTATTAGCAGTCATGTAGTCTTTTTTACGCCTACTGTACCTTCGTTCATCGACTAGATACAGTAACCCAAATAACATCATTTTGTAGCTCTTGAGTTGTTCTATTATATCCATTTTAGTTGGTCCAGAAGTATTAAATTTGAAGGAAGTTATGGTCCGTTTTAGGACCTGCTAGAGGTGCTGGACAAATTGAAAATCTACAGTAGTTTTCTCGAATGACGTCATAGAATGAGCAATGTCACACCCATCTGTGAGTAGCTGGTGTTGCCCACAAAATAGCACTATTAAAGGACGCATAGGTCATGAGAACTAGATAGAGAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACA</canonical>
            <polymorphic>TACCGTATGAACCATAAGAATTTTGTACCATTAGAATTAAAAAAAATCTAAAATTTCAAGGTTCATCTTACTGTAGATTGTGTTTCCAAAGCTTTCGCCCCCTATTCTAAGACTTACTATTAGCAGTCATGTAGTCTTTTTTACGCCTACTGTACCTTCGTTCATCGACTAGATACAGTAACCCAAATAACATCATTTTGTAGCTCTTGAGTTGTTCTATTATATCCATTTTAGTTGGTCCAGAAGTATTAAATTTGAAGGAAGTTATGGTCCGTTTTAGGACCTGCTAGAGGTGCTGGACAAATTGAAAATCTACAGTAGTTTTCTCGAATGACGTCATAGAATGAGCAATGTCACACCCATCTGTGAGTAGCTGGTGTTGCCCACAAAATAGCACTATTAAAGGACGCATAGGTCATGAGAACTAGATAGAGAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCMACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGACGCAGACAACAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TAGATGAAATGTGAGAGTTTGTG</pcr_primer_p2>
		<pcr_amplicon_size>561</pcr_amplicon_size>
		<canonical_amplicon>GAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTA</canonical_amplicon>
		<polymorphic_amplicon>GAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCMACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29918</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>415586</contig_pos>
        <strand></strand>
        <context>agccaaattt[T/C]gtmtcgtttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTT</left_flank>
        <right_flank>GTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTCTTGAGTTGTTCTATTATATCCATTTTAGTTGGTCCAGAAGTATTAAATTTGAAGGAAGTTATGGTCCGTTTTAGGACCTGCTAGAGGTGCTGGACAAATTGAAAATCTACAGTAGTTTTCTCGAATGACGTCATAGAATGAGCAATGTCACACCCATCTGTGAGTAGCTGGTGTTGCCCACAAAATAGCACTATTAAAGGACGCATAGGTCATGAGAACTAGATAGAGAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTCTACTCAAATGACGTCATATGAGCAATATCACACCCATATGTGAGTAGCTGGTATTGCCCACTGAATAGGACTATTGGATGAGGCATGTCGAAACAAAAAAGCCACTTGTAACCTTGATGCCTAAGGATAGAGAGACACAGAGAGTCATTTAGTTGTGGTAGAGTACAGTACCCTACTCAAATGACGTCATACCAT</canonical>
            <polymorphic>AGCTCTTGAGTTGTTCTATTATATCCATTTTAGTTGGTCCAGAAGTATTAAATTTGAAGGAAGTTATGGTCCGTTTTAGGACCTGCTAGAGGTGCTGGACAAATTGAAAATCTACAGTAGTTTTCTCGAATGACGTCATAGAATGAGCAATGTCACACCCATCTGTGAGTAGCTGGTGTTGCCCACAAAATAGCACTATTAAAGGACGCATAGGTCATGAGAACTAGATAGAGAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTYGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTCTACTCAAATGACGTCATATGAGCAATATCACACCCATATGTGAGTAGCTGGTATTGCCCACTGAATAGGACTATTGGATGAGGCATGTCGAAACAAAAAAGCCACTTGTAACCTTGATGCCTAAGGATAGAGAGACACAGAGAGTCATTTAGTTGTGGTAGAGTACAGTACCCTACTCAAATGACGTCATACCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCATCTACTTTTATTCCTAAAAATCT</pcr_primer_p1>
		<pcr_primer_p2>GACTACTGTAGATGAAATGTGAGAGT</pcr_primer_p2>
		<pcr_amplicon_size>386</pcr_amplicon_size>
		<canonical_amplicon>GCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTC</canonical_amplicon>
		<polymorphic_amplicon>GCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTYGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29919</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>415589</contig_pos>
        <strand></strand>
        <context>caaatttygt[A/C]tcgttttgta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGT</left_flank>
        <right_flank>TCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTGAGTTGTTCTATTATATCCATTTTAGTTGGTCCAGAAGTATTAAATTTGAAGGAAGTTATGGTCCGTTTTAGGACCTGCTAGAGGTGCTGGACAAATTGAAAATCTACAGTAGTTTTCTCGAATGACGTCATAGAATGAGCAATGTCACACCCATCTGTGAGTAGCTGGTGTTGCCCACAAAATAGCACTATTAAAGGACGCATAGGTCATGAGAACTAGATAGAGAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTCTACTCAAATGACGTCATATGAGCAATATCACACCCATATGTGAGTAGCTGGTATTGCCCACTGAATAGGACTATTGGATGAGGCATGTCGAAACAAAAAAGCCACTTGTAACCTTGATGCCTAAGGATAGAGAGACACAGAGAGTCATTTAGTTGTGGTAGAGTACAGTACCCTACTCAAATGACGTCATACCATGAG</canonical>
            <polymorphic>TCTTGAGTTGTTCTATTATATCCATTTTAGTTGGTCCAGAAGTATTAAATTTGAAGGAAGTTATGGTCCGTTTTAGGACCTGCTAGAGGTGCTGGACAAATTGAAAATCTACAGTAGTTTTCTCGAATGACGTCATAGAATGAGCAATGTCACACCCATCTGTGAGTAGCTGGTGTTGCCCACAAAATAGCACTATTAAAGGACGCATAGGTCATGAGAACTAGATAGAGAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTMTCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTCTACTCAAATGACGTCATATGAGCAATATCACACCCATATGTGAGTAGCTGGTATTGCCCACTGAATAGGACTATTGGATGAGGCATGTCGAAACAAAAAAGCCACTTGTAACCTTGATGCCTAAGGATAGAGAGACACAGAGAGTCATTTAGTTGTGGTAGAGTACAGTACCCTACTCAAATGACGTCATACCATGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCATCTACTTTTATTCCTAAAAATCT</pcr_primer_p1>
		<pcr_primer_p2>GACTACTGTAGATGAAATGTGAGAGT</pcr_primer_p2>
		<pcr_amplicon_size>386</pcr_amplicon_size>
		<canonical_amplicon>GCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTC</canonical_amplicon>
		<polymorphic_amplicon>GCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTMTCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29920</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>415714</contig_pos>
        <strand></strand>
        <context>ctctaacgcg[T/G]ccaactttaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCG</left_flank>
        <right_flank>CCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGACGTCATAGAATGAGCAATGTCACACCCATCTGTGAGTAGCTGGTGTTGCCCACAAAATAGCACTATTAAAGGACGCATAGGTCATGAGAACTAGATAGAGAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTCTACTCAAATGACGTCATATGAGCAATATCACACCCATATGTGAGTAGCTGGTATTGCCCACTGAATAGGACTATTGGATGAGGCATGTCGAAACAAAAAAGCCACTTGTAACCTTGATGCCTAAGGATAGAGAGACACAGAGAGTCATTTAGTTGTGGTAGAGTACAGTACCCTACTCAAATGACGTCATACCATGAGCAATATCACACCCATCTGCGAGTACCAGGTATTGCCCTCTAAAAAGCACTTGTAGATGACGCATAGGCCATGAGAACTAGAGATAGAGAGACGCAGACAACAAAAATGTGTCTCTCTGGTCATTC</canonical>
            <polymorphic>AATGACGTCATAGAATGAGCAATGTCACACCCATCTGTGAGTAGCTGGTGTTGCCCACAAAATAGCACTATTAAAGGACGCATAGGTCATGAGAACTAGATAGAGAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGKCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTCTACTCAAATGACGTCATATGAGCAATATCACACCCATATGTGAGTAGCTGGTATTGCCCACTGAATAGGACTATTGGATGAGGCATGTCGAAACAAAAAAGCCACTTGTAACCTTGATGCCTAAGGATAGAGAGACACAGAGAGTCATTTAGTTGTGGTAGAGTACAGTACCCTACTCAAATGACGTCATACCATGAGCAATATCACACCCATCTGCGAGTACCAGGTATTGCCCTCTAAAAAGCACTTGTAGATGACGCATAGGCCATGAGAACTAGAGATAGAGAGACGCAGACAACAAAAATGTGTCTCTCTGGTCATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGCGT</site>
                <isoschizomers>
                    <enzyme>MluI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCATCTACTTTTATTCCTAAAAATCT</pcr_primer_p1>
		<pcr_primer_p2>GACTACTGTAGATGAAATGTGAGAGT</pcr_primer_p2>
		<pcr_amplicon_size>386</pcr_amplicon_size>
		<canonical_amplicon>GCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTC</canonical_amplicon>
		<polymorphic_amplicon>GCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGKCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29921</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>415789</contig_pos>
        <strand></strand>
        <context>tgcgtaaaat[A/T]tcatgamcta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAAT</left_flank>
        <right_flank>TCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGACGCATAGGTCATGAGAACTAGATAGAGAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTCTACTCAAATGACGTCATATGAGCAATATCACACCCATATGTGAGTAGCTGGTATTGCCCACTGAATAGGACTATTGGATGAGGCATGTCGAAACAAAAAAGCCACTTGTAACCTTGATGCCTAAGGATAGAGAGACACAGAGAGTCATTTAGTTGTGGTAGAGTACAGTACCCTACTCAAATGACGTCATACCATGAGCAATATCACACCCATCTGCGAGTACCAGGTATTGCCCTCTAAAAAGCACTTGTAGATGACGCATAGGCCATGAGAACTAGAGATAGAGAGACGCAGACAACAAAAATGTGTCTCTCTGGTCATTCAACGCGCCCCCAGCTAGTCAGTTCTACTCTCATATTCTCCAAATCGACGACTTGACTGAATAGACGTCTTTGGGG</canonical>
            <polymorphic>GGACGCATAGGTCATGAGAACTAGATAGAGAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATWTCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTCTACTCAAATGACGTCATATGAGCAATATCACACCCATATGTGAGTAGCTGGTATTGCCCACTGAATAGGACTATTGGATGAGGCATGTCGAAACAAAAAAGCCACTTGTAACCTTGATGCCTAAGGATAGAGAGACACAGAGAGTCATTTAGTTGTGGTAGAGTACAGTACCCTACTCAAATGACGTCATACCATGAGCAATATCACACCCATCTGCGAGTACCAGGTATTGCCCTCTAAAAAGCACTTGTAGATGACGCATAGGCCATGAGAACTAGAGATAGAGAGACGCAGACAACAAAAATGTGTCTCTCTGGTCATTCAACGCGCCCCCAGCTAGTCAGTTCTACTCTCATATTCTCCAAATCGACGACTTGACTGAATAGACGTCTTTGGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCATCTACTTTTATTCCTAAAAATCT</pcr_primer_p1>
		<pcr_primer_p2>GACTACTGTAGATGAAATGTGAGAGT</pcr_primer_p2>
		<pcr_amplicon_size>386</pcr_amplicon_size>
		<canonical_amplicon>GCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTC</canonical_amplicon>
		<polymorphic_amplicon>GCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATWTCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29922</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>415796</contig_pos>
        <strand></strand>
        <context>aatwtcatga[C/A]ctatatwttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGA</left_flank>
        <right_flank>CTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGTCATGAGAACTAGATAGAGAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTCTACTCAAATGACGTCATATGAGCAATATCACACCCATATGTGAGTAGCTGGTATTGCCCACTGAATAGGACTATTGGATGAGGCATGTCGAAACAAAAAAGCCACTTGTAACCTTGATGCCTAAGGATAGAGAGACACAGAGAGTCATTTAGTTGTGGTAGAGTACAGTACCCTACTCAAATGACGTCATACCATGAGCAATATCACACCCATCTGCGAGTACCAGGTATTGCCCTCTAAAAAGCACTTGTAGATGACGCATAGGCCATGAGAACTAGAGATAGAGAGACGCAGACAACAAAAATGTGTCTCTCTGGTCATTCAACGCGCCCCCAGCTAGTCAGTTCTACTCTCATATTCTCCAAATCGACGACTTGACTGAATAGACGTCTTTGGGGACTTTCC</canonical>
            <polymorphic>TAGGTCATGAGAACTAGATAGAGAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGAMCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTCTACTCAAATGACGTCATATGAGCAATATCACACCCATATGTGAGTAGCTGGTATTGCCCACTGAATAGGACTATTGGATGAGGCATGTCGAAACAAAAAAGCCACTTGTAACCTTGATGCCTAAGGATAGAGAGACACAGAGAGTCATTTAGTTGTGGTAGAGTACAGTACCCTACTCAAATGACGTCATACCATGAGCAATATCACACCCATCTGCGAGTACCAGGTATTGCCCTCTAAAAAGCACTTGTAGATGACGCATAGGCCATGAGAACTAGAGATAGAGAGACGCAGACAACAAAAATGTGTCTCTCTGGTCATTCAACGCGCCCCCAGCTAGTCAGTTCTACTCTCATATTCTCCAAATCGACGACTTGACTGAATAGACGTCTTTGGGGACTTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCATCTACTTTTATTCCTAAAAATCT</pcr_primer_p1>
		<pcr_primer_p2>GACTACTGTAGATGAAATGTGAGAGT</pcr_primer_p2>
		<pcr_amplicon_size>386</pcr_amplicon_size>
		<canonical_amplicon>GCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTC</canonical_amplicon>
		<polymorphic_amplicon>GCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGAMCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29923</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>415803</contig_pos>
        <strand></strand>
        <context>tgamctatat[T/A]tttgtaattg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATAT</left_flank>
        <right_flank>TTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGAACTAGATAGAGAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTCTACTCAAATGACGTCATATGAGCAATATCACACCCATATGTGAGTAGCTGGTATTGCCCACTGAATAGGACTATTGGATGAGGCATGTCGAAACAAAAAAGCCACTTGTAACCTTGATGCCTAAGGATAGAGAGACACAGAGAGTCATTTAGTTGTGGTAGAGTACAGTACCCTACTCAAATGACGTCATACCATGAGCAATATCACACCCATCTGCGAGTACCAGGTATTGCCCTCTAAAAAGCACTTGTAGATGACGCATAGGCCATGAGAACTAGAGATAGAGAGACGCAGACAACAAAAATGTGTCTCTCTGGTCATTCAACGCGCCCCCAGCTAGTCAGTTCTACTCTCATATTCTCCAAATCGACGACTTGACTGAATAGACGTCTTTGGGGACTTTCCAGAAGAA</canonical>
            <polymorphic>TGAGAACTAGATAGAGAGAGAGACGCAGACAACAAAAGTCTGCGTCTGGTCAGACAACGCGCCACTAACAGCCCACTATTCAACTCTCATATTCTCCAAATTGACGACTTGACTGAATAGACGTCTCTTAACTTCGGAACTTTCCAGAAGAATCCTGATGAATGGATTCTGGAAAGTTCCTACTTATTTTTTCTAAAAATCTGCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATWTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTCTACTCAAATGACGTCATATGAGCAATATCACACCCATATGTGAGTAGCTGGTATTGCCCACTGAATAGGACTATTGGATGAGGCATGTCGAAACAAAAAAGCCACTTGTAACCTTGATGCCTAAGGATAGAGAGACACAGAGAGTCATTTAGTTGTGGTAGAGTACAGTACCCTACTCAAATGACGTCATACCATGAGCAATATCACACCCATCTGCGAGTACCAGGTATTGCCCTCTAAAAAGCACTTGTAGATGACGCATAGGCCATGAGAACTAGAGATAGAGAGACGCAGACAACAAAAATGTGTCTCTCTGGTCATTCAACGCGCCCCCAGCTAGTCAGTTCTACTCTCATATTCTCCAAATCGACGACTTGACTGAATAGACGTCTTTGGGGACTTTCCAGAAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCATCTACTTTTATTCCTAAAAATCT</pcr_primer_p1>
		<pcr_primer_p2>GACTACTGTAGATGAAATGTGAGAGT</pcr_primer_p2>
		<pcr_amplicon_size>386</pcr_amplicon_size>
		<canonical_amplicon>GCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATTTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTC</canonical_amplicon>
		<polymorphic_amplicon>GCATCTACTTTTATTCCTAAAAATCTATGGATTTCCGTTTCAAAATGGTGAGTTTTAAAGCTTCAAATATAGCCAAATTTTGTATCGTTTTGTAGCTTTTCTTAAGTTCTACATTTCACTTTTCGATTCAACCAAAGATTCCAATTTTGAGCCGAGTTATGCGCCTTTAATGTTCGACAAGATCGACAAGGCGCGTATCTCTAACGCGTCCAACTTTAAAGACGCATATCTCGAAAACTACAAAAGCTAGCTAAAATTTAAAATCAAGTAAAATGCGTAAAATATCATGACCTATATWTTTGTAATTGACAAATTTTGTCCGGCGTACCTAGTTTTTGAGTTATGTGTCTTTAAACACAAACTCTCACATTTCATCTACAGTAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29924</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>427347</contig_pos>
        <strand></strand>
        <context>gaataaattg[G/A]tctaaataga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATGCCCAAAAATATATCTAAAAATGTCCCGAAAATTCCAGAATAAATTG</left_flank>
        <right_flank>TCTAAATAGACCTAAAAATGGTCCCAAAATGATCTGAAAATCGAAAATAG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATCTGAAAGAAATGGGGGATTTTAGAGGGTGATTTTGACACATTTTCTGGAATTTTCTAGAGCATTTTGGGTCATTTTTGAGCCAAAACGGCCGAAAATCATTTTTCAGTTCATTCGGGGACCATTTTACTGGATGTTTCGGAGCATTTTTTGGTCCATTTCAGGTCGTTTTGAGGATATTTTGATTCGTATTTAGGTCATTTTCAGTGCATTTTGGTGCCGAAACTCCAAACATTTTCTGGTCTAGATCATTTTAGGACCACATTTAAAGATTCCTTCTGGAACTTTCTGGAATTTTCTGAAGCATTCTCAATATCCCATATCATTCAGATCACTAAAAATGGTCCAAAATCGAGCTTTAATACCAAATTTGGACGTTTGGGTGCACAAAAATGGTCTGGAATGGGTCTAAAAAAGTCTCGAAAATTACCCAAAAATGAACCTGGAAATGCCCAAAAATATATCTAAAAATGTCCCGAAAATTCCAGAATAAATTGGTCTAAATAGACCTAAAAATGGTCCCAAAATGATCTGAAAATCGAAAATAGGGCGTTTGGACACAAAAACGACCCAAAATAGACCTCAATGTGTCCCGAATTCTGGAACTTTCGGGGCATAAATGGTCCATTTTGGGTCACAAAAATGAGCCTAAAACGCCTTGTAAGCTCCAGATGATCGAAAAATACATGAAAATGATCCAGAAATCACCTAGGATAGAAATTTTAGCCGTTTATGATCAAAAATACACTTTTAAATGACCCTGAAATTACCCCACATCGACCTTAAAATGACCGCTACCGTACCTTAACGACCTTCTCGGCACTCTGAGCGGTATCCAACTTCAGACCCTTATCCAAGAAGGACACTCTATCAGTGCTAGCCGTCTCCACTGGATCCCCAATTCGAATGCATCCGAATCCCTTGGTGACCAGCTCATTTAGCATCTGTTGAGCCTTGTCTGATTCCTCAGCTGATCGTTCAATGATCGTATCCCTCGA</canonical>
            <polymorphic>TGATCTGAAAGAAATGGGGGATTTTAGAGGGTGATTTTGACACATTTTCTGGAATTTTCTAGAGCATTTTGGGTCATTTTTGAGCCAAAACGGCCGAAAATCATTTTTCAGTTCATTCGGGGACCATTTTACTGGATGTTTCGGAGCATTTTTTGGTCCATTTCAGGTCGTTTTGAGGATATTTTGATTCGTATTTAGGTCATTTTCAGTGCATTTTGGTGCCGAAACTCCAAACATTTTCTGGTCTAGATCATTTTAGGACCACATTTAAAGATTCCTTCTGGAACTTTCTGGAATTTTCTGAAGCATTCTCAATATCCCATATCATTCAGATCACTAAAAATGGTCCAAAATCGAGCTTTAATACCAAATTTGGACGTTTGGGTGCACAAAAATGGTCTGGAATGGGTCTAAAAAAGTCTCGAAAATTACCCAAAAATGAACCTGGAAATGCCCAAAAATATATCTAAAAATGTCCCGAAAATTCCAGAATAAATTGRTCTAAATAGACCTAAAAATGGTCCCAAAATGATCTGAAAATCGAAAATAGGGCGTTTGGACACAAAAACGACCCAAAATAGACCTCAATGTGTCCCGAATTCTGGAACTTTCGGGGCATAAATGGTCCATTTTGGGTCACAAAAATGAGCCTAAAACGCCTTGTAAGCTCCAGATGATCGAAAAATACATGAAAATGATCCAGAAATCACCTAGGATAGAAATTTTAGCCGTTTATGATCAAAAATACACTTTTAAATGACCCTGAAATTACCCCACATCGACCTTAAAATGACCGCTACCGTACCTTAACGACCTTCTCGGCACTCTGAGCGGTATCCAACTTCAGACCCTTATCCAAGAAGGACACTCTATCAGTGCTAGCCGTCTCCACTGGATCCCCAATTCGAATGCATCCGAATCCCTTGGTGACCAGCTCATTTAGCATCTGTTGAGCCTTGTCTGATTCCTCAGCTGATCGTTCAATGATCGTATCCCTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCGAGCTTTAATACCAAAT</pcr_primer_p1>
		<pcr_primer_p2>GGTCTATTTTGGGTCGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>AAAATCGAGCTTTAATACCAAATTTGGACGTTTGGGTGCACAAAAATGGTCTGGAATGGGTCTAAAAAAGTCTCGAAAATTACCCAAAAATGAACCTGGAAATGCCCAAAAATATATCTAAAAATGTCCCGAAAATTCCAGAATAAATTGGTCTAAATAGACCTAAAAATGGTCCCAAAATGATCTGAAAATCGAAAATAGGGCGTTTGGACACAAAAACGACCCAAAATAGACC</canonical_amplicon>
		<polymorphic_amplicon>AAAATCGAGCTTTAATACCAAATTTGGACGTTTGGGTGCACAAAAATGGTCTGGAATGGGTCTAAAAAAGTCTCGAAAATTACCCAAAAATGAACCTGGAAATGCCCAAAAATATATCTAAAAATGTCCCGAAAATTCCAGAATAAATTGRTCTAAATAGACCTAAAAATGGTCCCAAAATGATCTGAAAATCGAAAATAGGGCGTTTGGACACAAAAACGACCCAAAATAGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29931</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>440059</contig_pos>
        <strand></strand>
        <context>aattggctta[G/T]aatggcccaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGAAGTTCCTGGAATAATTTGAGTTGGGAAAGAGTGAGAAAATTGGCTTA</left_flank>
        <right_flank>AATGGCCCAAAATTGGTGCAAAATGGTCAAAAACAGTCCAAAATAGGCTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATCCAGGATCTCGGAAATCTAATACCTGAGGATTCGAAGATCCGAGGATCTCAGGCTTCGATAATCGGTGTTCAGAAGATTCAAGGATCCGATGAAGCCTCGCAAATTCCAAAAATCGGAGACTTCGTAGAAGATAGGTATTTCAGAGAATCCGAACCATTTTCAACCATTTCCAGCCTAATTTTCAGCCTAAAATCCCTCAAAACCCCTCCCACCTTCAATATCTCTGGTGGAATTCGATTGCGATGCTTCATCTCAGGATATCGTCGTTTATAGAAGTCGAAAACCTCGGAAACGTCCGTCCCGTCTTGACAAATCGACGCACAATAATAGGCACGAGTCAGGAAATCCGAGAATTTCGAAAAACTTTTCGATTCCGCTTCAGCCAAACTCATTAGCGTTAGAGCCGCTTTTCCGAACTGCTTGTTGGCGATTTCTCGTCCGTAACGAAGTTCCTGGAATAATTTGAGTTGGGAAAGAGTGAGAAAATTGGCTTAGAATGGCCCAAAATTGGTGCAAAATGGTCAAAAACAGTCCAAAATAGGCTCAAAATCGTCCAAAATTTGCAAAAAATGGTCAAAAACTCATGAAAAATTGATCCTAAATAGATCTAAATTAGTCAAAAACAGGCTTAAAATAGTTAAAAATTCACTAATTTTTTTAAAGCGAATTTTGAATCTTTTTTATTTGATTTCAGATCATTTTAGGCCGTTTTGGGGCATGTTTTGGATCGATTTTAGTGGATTTTTAGTCATTTTTAGAAGAATTTGGACCATTTTGAGTTATTTTTAGCGAATTTTGGACCGGTTTTGGCCTGTTTCATGAATTTTTAGTGATTTTGAGCCTATTTTGAGGAGATTCGGGCCTGTTCAGGACTGTTTTCGACTATGTTAGGCTTATTTTTGATCATTTTTGACCTATTTCGGACTATTTTAGATTATTTTAGGCTTATTTTCAACCTGTTCAGGCCCATTTTGAATCATTTTCAGCGGATTTTT</canonical>
            <polymorphic>GAATCCAGGATCTCGGAAATCTAATACCTGAGGATTCGAAGATCCGAGGATCTCAGGCTTCGATAATCGGTGTTCAGAAGATTCAAGGATCCGATGAAGCCTCGCAAATTCCAAAAATCGGAGACTTCGTAGAAGATAGGTATTTCAGAGAATCCGAACCATTTTCAACCATTTCCAGCCTAATTTTCAGCCTAAAATCCCTCAAAACCCCTCCCACCTTCAATATCTCTGGTGGAATTCGATTGCGATGCTTCATCTCAGGATATCGTCGTTTATAGAAGTCGAAAACCTCGGAAACGTCCGTCCCGTCTTGACAAATCGACGCACAATAATAGGCACGAGTCAGGAAATCCGAGAATTTCGAAAAACTTTTCGATTCCGCTTCAGCCAAACTCATTAGCGTTAGAGCCGCTTTTCCGAACTGCTTGTTGGCGATTTCTCGTCCGTAACGAAGTTCCTGGAATAATTTGAGTTGGGAAAGAGTGAGAAAATTGGCTTAKAATGGCCCAAAATTGGTGCAAAATGGTCAAAAACAGTCCAAAATAGGCTCAAAATCGTCCAAAATTTGCAAAAAATGGTCAAAAACTCATGAAAAATTGATCCTAAATAGATCTAAATTAGTCAAAAACAGGCTTAAAATAGTTAAAAATTCACTAATTTTTTTAAAGCGAATTTTGAATCTTTTTTATTTGATTTCAGATCATTTTAGGCCGTTTTGGGGCATGTTTTGGATCGATTTTAGTGGATTTTTAGTCATTTTTAGAAGAATTTGGACCATTTTGAGTTATTTTTAGCGAATTTTGGACCGGTTTTGGCCTGTTTCATGAATTTTTAGTGATTTTGAGCCTATTTTGAGGAGATTCGGGCCTGTTCAGGACTGTTTTCGACTATGTTAGGCTTATTTTTGATCATTTTTGACCTATTTCGGACTATTTTAGATTATTTTAGGCTTATTTTCAACCTGTTCAGGCCCATTTTGAATCATTTTCAGCGGATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 239 205 28 24</canonical_bands>
                <polymorphic_bands>743 205 28 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAACTCATTAGCGTTAGAGC</pcr_primer_p1>
		<pcr_primer_p2>TTTGGACAATTTTAAGGTAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>673</pcr_amplicon_size>
		<canonical_amplicon>CAAACTCATTAGCGTTAGAGCCGCTTTTCCGAACTGCTTGTTGGCGATTTCTCGTCCGTAACGAAGTTCCTGGAATAATTTGAGTTGGGAAAGAGTGAGAAAATTGGCTTAGAATGGCCCAAAATTGGTGCAAAA</canonical_amplicon>
		<polymorphic_amplicon>CAAACTCATTAGCGTTAGAGCCGCTTTTCCGAACTGCTTGTTGGCGATTTCTCGTCCGTAACGAAGTTCCTGGAATAATTTGAGTTGGGAAAGAGTGAGAAAATTGGCTTAKAATGGCCCAAAATTGGTGCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29932</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>440109</contig_pos>
        <strand></strand>
        <context>aaaataggct[C/A]aaaatcgtcc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GAATGGCCCAAAATTGGTGCAAAATGGTCAAAAACAGTCCAAAATAGGCT</left_flank>
        <right_flank>AAAATCGTCCAAAATTTGCAAAAAATGGTCAAAAACTCATGAAAAATTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCAGGCTTCGATAATCGGTGTTCAGAAGATTCAAGGATCCGATGAAGCCTCGCAAATTCCAAAAATCGGAGACTTCGTAGAAGATAGGTATTTCAGAGAATCCGAACCATTTTCAACCATTTCCAGCCTAATTTTCAGCCTAAAATCCCTCAAAACCCCTCCCACCTTCAATATCTCTGGTGGAATTCGATTGCGATGCTTCATCTCAGGATATCGTCGTTTATAGAAGTCGAAAACCTCGGAAACGTCCGTCCCGTCTTGACAAATCGACGCACAATAATAGGCACGAGTCAGGAAATCCGAGAATTTCGAAAAACTTTTCGATTCCGCTTCAGCCAAACTCATTAGCGTTAGAGCCGCTTTTCCGAACTGCTTGTTGGCGATTTCTCGTCCGTAACGAAGTTCCTGGAATAATTTGAGTTGGGAAAGAGTGAGAAAATTGGCTTAGAATGGCCCAAAATTGGTGCAAAATGGTCAAAAACAGTCCAAAATAGGCTCAAAATCGTCCAAAATTTGCAAAAAATGGTCAAAAACTCATGAAAAATTGATCCTAAATAGATCTAAATTAGTCAAAAACAGGCTTAAAATAGTTAAAAATTCACTAATTTTTTTAAAGCGAATTTTGAATCTTTTTTATTTGATTTCAGATCATTTTAGGCCGTTTTGGGGCATGTTTTGGATCGATTTTAGTGGATTTTTAGTCATTTTTAGAAGAATTTGGACCATTTTGAGTTATTTTTAGCGAATTTTGGACCGGTTTTGGCCTGTTTCATGAATTTTTAGTGATTTTGAGCCTATTTTGAGGAGATTCGGGCCTGTTCAGGACTGTTTTCGACTATGTTAGGCTTATTTTTGATCATTTTTGACCTATTTCGGACTATTTTAGATTATTTTAGGCTTATTTTCAACCTGTTCAGGCCCATTTTGAATCATTTTCAGCGGATTTTTGACCATTTTAACCGGTTTTCAGCCATTTCCAGCCCCCAAATCTACCTTAA</canonical>
            <polymorphic>TCTCAGGCTTCGATAATCGGTGTTCAGAAGATTCAAGGATCCGATGAAGCCTCGCAAATTCCAAAAATCGGAGACTTCGTAGAAGATAGGTATTTCAGAGAATCCGAACCATTTTCAACCATTTCCAGCCTAATTTTCAGCCTAAAATCCCTCAAAACCCCTCCCACCTTCAATATCTCTGGTGGAATTCGATTGCGATGCTTCATCTCAGGATATCGTCGTTTATAGAAGTCGAAAACCTCGGAAACGTCCGTCCCGTCTTGACAAATCGACGCACAATAATAGGCACGAGTCAGGAAATCCGAGAATTTCGAAAAACTTTTCGATTCCGCTTCAGCCAAACTCATTAGCGTTAGAGCCGCTTTTCCGAACTGCTTGTTGGCGATTTCTCGTCCGTAACGAAGTTCCTGGAATAATTTGAGTTGGGAAAGAGTGAGAAAATTGGCTTAGAATGGCCCAAAATTGGTGCAAAATGGTCAAAAACAGTCCAAAATAGGCTMAAAATCGTCCAAAATTTGCAAAAAATGGTCAAAAACTCATGAAAAATTGATCCTAAATAGATCTAAATTAGTCAAAAACAGGCTTAAAATAGTTAAAAATTCACTAATTTTTTTAAAGCGAATTTTGAATCTTTTTTATTTGATTTCAGATCATTTTAGGCCGTTTTGGGGCATGTTTTGGATCGATTTTAGTGGATTTTTAGTCATTTTTAGAAGAATTTGGACCATTTTGAGTTATTTTTAGCGAATTTTGGACCGGTTTTGGCCTGTTTCATGAATTTTTAGTGATTTTGAGCCTATTTTGAGGAGATTCGGGCCTGTTCAGGACTGTTTTCGACTATGTTAGGCTTATTTTTGATCATTTTTGACCTATTTCGGACTATTTTAGATTATTTTAGGCTTATTTTCAACCTGTTCAGGCCCATTTTGAATCATTTTCAGCGGATTTTTGACCATTTTAACCGGTTTTCAGCCATTTCCAGCCCCCAAATCTACCTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGTTGGGAAAGAGTGAGA</pcr_primer_p1>
		<pcr_primer_p2>TTTGGACAATTTTAAGGTAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>593</pcr_amplicon_size>
		<canonical_amplicon>TGAGTTGGGAAAGAGTGAGAAAATTGGCTTAGAATGGCCCAAAATTGGTGCAAAATGGTCAAAAACAGTCCAAAATAGGCTCAAAATCGTCCAAAATTTGCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGAGTTGGGAAAGAGTGAGAAAATTGGCTTAGAATGGCCCAAAATTGGTGCAAAATGGTCAAAAACAGTCCAAAATAGGCTMAAAATCGTCCAAAATTTGCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29933</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>440123</contig_pos>
        <strand></strand>
        <context>atcgtccaaa[A/G]tttgcwaaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGTGCAAAATGGTCAAAAACAGTCCAAAATAGGCTCAAAATCGTCCAAA</left_flank>
        <right_flank>TTTGCAAAAAATGGTCAAAAACTCATGAAAAATTGATCCTAAATAGATCT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCGGTGTTCAGAAGATTCAAGGATCCGATGAAGCCTCGCAAATTCCAAAAATCGGAGACTTCGTAGAAGATAGGTATTTCAGAGAATCCGAACCATTTTCAACCATTTCCAGCCTAATTTTCAGCCTAAAATCCCTCAAAACCCCTCCCACCTTCAATATCTCTGGTGGAATTCGATTGCGATGCTTCATCTCAGGATATCGTCGTTTATAGAAGTCGAAAACCTCGGAAACGTCCGTCCCGTCTTGACAAATCGACGCACAATAATAGGCACGAGTCAGGAAATCCGAGAATTTCGAAAAACTTTTCGATTCCGCTTCAGCCAAACTCATTAGCGTTAGAGCCGCTTTTCCGAACTGCTTGTTGGCGATTTCTCGTCCGTAACGAAGTTCCTGGAATAATTTGAGTTGGGAAAGAGTGAGAAAATTGGCTTAGAATGGCCCAAAATTGGTGCAAAATGGTCAAAAACAGTCCAAAATAGGCTCAAAATCGTCCAAAATTTGCAAAAAATGGTCAAAAACTCATGAAAAATTGATCCTAAATAGATCTAAATTAGTCAAAAACAGGCTTAAAATAGTTAAAAATTCACTAATTTTTTTAAAGCGAATTTTGAATCTTTTTTATTTGATTTCAGATCATTTTAGGCCGTTTTGGGGCATGTTTTGGATCGATTTTAGTGGATTTTTAGTCATTTTTAGAAGAATTTGGACCATTTTGAGTTATTTTTAGCGAATTTTGGACCGGTTTTGGCCTGTTTCATGAATTTTTAGTGATTTTGAGCCTATTTTGAGGAGATTCGGGCCTGTTCAGGACTGTTTTCGACTATGTTAGGCTTATTTTTGATCATTTTTGACCTATTTCGGACTATTTTAGATTATTTTAGGCTTATTTTCAACCTGTTCAGGCCCATTTTGAATCATTTTCAGCGGATTTTTGACCATTTTAACCGGTTTTCAGCCATTTCCAGCCCCCAAATCTACCTTAAAATTGTCCAAATAG</canonical>
            <polymorphic>AATCGGTGTTCAGAAGATTCAAGGATCCGATGAAGCCTCGCAAATTCCAAAAATCGGAGACTTCGTAGAAGATAGGTATTTCAGAGAATCCGAACCATTTTCAACCATTTCCAGCCTAATTTTCAGCCTAAAATCCCTCAAAACCCCTCCCACCTTCAATATCTCTGGTGGAATTCGATTGCGATGCTTCATCTCAGGATATCGTCGTTTATAGAAGTCGAAAACCTCGGAAACGTCCGTCCCGTCTTGACAAATCGACGCACAATAATAGGCACGAGTCAGGAAATCCGAGAATTTCGAAAAACTTTTCGATTCCGCTTCAGCCAAACTCATTAGCGTTAGAGCCGCTTTTCCGAACTGCTTGTTGGCGATTTCTCGTCCGTAACGAAGTTCCTGGAATAATTTGAGTTGGGAAAGAGTGAGAAAATTGGCTTAGAATGGCCCAAAATTGGTGCAAAATGGTCAAAAACAGTCCAAAATAGGCTCAAAATCGTCCAAARTTTGCAAAAAATGGTCAAAAACTCATGAAAAATTGATCCTAAATAGATCTAAATTAGTCAAAAACAGGCTTAAAATAGTTAAAAATTCACTAATTTTTTTAAAGCGAATTTTGAATCTTTTTTATTTGATTTCAGATCATTTTAGGCCGTTTTGGGGCATGTTTTGGATCGATTTTAGTGGATTTTTAGTCATTTTTAGAAGAATTTGGACCATTTTGAGTTATTTTTAGCGAATTTTGGACCGGTTTTGGCCTGTTTCATGAATTTTTAGTGATTTTGAGCCTATTTTGAGGAGATTCGGGCCTGTTCAGGACTGTTTTCGACTATGTTAGGCTTATTTTTGATCATTTTTGACCTATTTCGGACTATTTTAGATTATTTTAGGCTTATTTTCAACCTGTTCAGGCCCATTTTGAATCATTTTCAGCGGATTTTTGACCATTTTAACCGGTTTTCAGCCATTTCCAGCCCCCAAATCTACCTTAAAATTGTCCAAATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>238 206 129 121 96 85 42 30 30 23</canonical_bands>
                <polymorphic_bands>291 238 129 121 96 42 30 30 23</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>224 121 108 96 75 54 52 42 32 32 30 30 25 21 21 15 14 8</canonical_bands>
                <polymorphic_bands>224 121 108 96 84 75 54 42 32 30 30 25 21 21 15 14 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGTTGGGAAAGAGTGAGA</pcr_primer_p1>
		<pcr_primer_p2>TTTGGACAATTTTAAGGTAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>593</pcr_amplicon_size>
		<canonical_amplicon>TGAGTTGGGAAAGAGTGAGAAAATTGGCTTAGAATGGCCCAAAATTGGTGCAAAATGGTCAAAAACAGTCCAAAATAGGCTCAAAATCGTCCAAAATTTGCAAAAAATGGTCAAAAACTCATGAAAAATTGATCCTAAATAGATCTAAATTAGTCAAAAACAGGCTTAAAATAGTTAAAAATTCACTAATTTTTTTAAAGCGAATTTTGAATCTTTTTTATTTGATTTCAGATCATTTTAGGCCGTTTTGGGGCATGTTTTGGATCGATTTTAGTGGATTTTTAGTCATTTTTAGAAGAATTTGGACCATTTTGAGTTATTTTTAGCGAATTTTGGACCGGTTTTGGCCTGTTTCATGAATTTTTAGTGATTTTGAGCCTATTTTGAGGAGATTCGGGCCTGTTCAGGACTGTTTTCGACTATGTTAGGCTTATTTTTGATCATTTTTGACCTATTTCGGACTATTTTAGATTATTTTAGGCTTATTTTCAACCTGTTCAGGCCCATTTTGAATCATTTTCAGCGGATTTTTGACCATTTTAACCGGTTTTCAGCCATTTCCAGCCCCCAAATCTACCTTAAAATTGTCCAAA</canonical_amplicon>
		<polymorphic_amplicon>TGAGTTGGGAAAGAGTGAGAAAATTGGCTTAGAATGGCCCAAAATTGGTGCAAAATGGTCAAAAACAGTCCAAAATAGGCTCAAAATCGTCCAAARTTTGCAAAAAATGGTCAAAAACTCATGAAAAATTGATCCTAAATAGATCTAAATTAGTCAAAAACAGGCTTAAAATAGTTAAAAATTCACTAATTTTTTTAAAGCGAATTTTGAATCTTTTTTATTTGATTTCAGATCATTTTAGGCCGTTTTGGGGCATGTTTTGGATCGATTTTAGTGGATTTTTAGTCATTTTTAGAAGAATTTGGACCATTTTGAGTTATTTTTAGCGAATTTTGGACCGGTTTTGGCCTGTTTCATGAATTTTTAGTGATTTTGAGCCTATTTTGAGGAGATTCGGGCCTGTTCAGGACTGTTTTCGACTATGTTAGGCTTATTTTTGATCATTTTTGACCTATTTCGGACTATTTTAGATTATTTTAGGCTTATTTTCAACCTGTTCAGGCCCATTTTGAATCATTTTCAGCGGATTTTTGACCATTTTAACCGGTTTTCAGCCATTTCCAGCCCCCAAATCTACCTTAAAATTGTCCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29934</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>440129</contig_pos>
        <strand></strand>
        <context>caaartttgc[A/T]aaaaatggtc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATGGTCAAAAACAGTCCAAAATAGGCTCAAAATCGTCCAAAATTTGC</left_flank>
        <right_flank>AAAAATGGTCAAAAACTCATGAAAAATTGATCCTAAATAGATCTAAATTA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTCAGAAGATTCAAGGATCCGATGAAGCCTCGCAAATTCCAAAAATCGGAGACTTCGTAGAAGATAGGTATTTCAGAGAATCCGAACCATTTTCAACCATTTCCAGCCTAATTTTCAGCCTAAAATCCCTCAAAACCCCTCCCACCTTCAATATCTCTGGTGGAATTCGATTGCGATGCTTCATCTCAGGATATCGTCGTTTATAGAAGTCGAAAACCTCGGAAACGTCCGTCCCGTCTTGACAAATCGACGCACAATAATAGGCACGAGTCAGGAAATCCGAGAATTTCGAAAAACTTTTCGATTCCGCTTCAGCCAAACTCATTAGCGTTAGAGCCGCTTTTCCGAACTGCTTGTTGGCGATTTCTCGTCCGTAACGAAGTTCCTGGAATAATTTGAGTTGGGAAAGAGTGAGAAAATTGGCTTAGAATGGCCCAAAATTGGTGCAAAATGGTCAAAAACAGTCCAAAATAGGCTCAAAATCGTCCAAAATTTGCAAAAAATGGTCAAAAACTCATGAAAAATTGATCCTAAATAGATCTAAATTAGTCAAAAACAGGCTTAAAATAGTTAAAAATTCACTAATTTTTTTAAAGCGAATTTTGAATCTTTTTTATTTGATTTCAGATCATTTTAGGCCGTTTTGGGGCATGTTTTGGATCGATTTTAGTGGATTTTTAGTCATTTTTAGAAGAATTTGGACCATTTTGAGTTATTTTTAGCGAATTTTGGACCGGTTTTGGCCTGTTTCATGAATTTTTAGTGATTTTGAGCCTATTTTGAGGAGATTCGGGCCTGTTCAGGACTGTTTTCGACTATGTTAGGCTTATTTTTGATCATTTTTGACCTATTTCGGACTATTTTAGATTATTTTAGGCTTATTTTCAACCTGTTCAGGCCCATTTTGAATCATTTTCAGCGGATTTTTGACCATTTTAACCGGTTTTCAGCCATTTCCAGCCCCCAAATCTACCTTAAAATTGTCCAAATAGGCATCA</canonical>
            <polymorphic>TGTTCAGAAGATTCAAGGATCCGATGAAGCCTCGCAAATTCCAAAAATCGGAGACTTCGTAGAAGATAGGTATTTCAGAGAATCCGAACCATTTTCAACCATTTCCAGCCTAATTTTCAGCCTAAAATCCCTCAAAACCCCTCCCACCTTCAATATCTCTGGTGGAATTCGATTGCGATGCTTCATCTCAGGATATCGTCGTTTATAGAAGTCGAAAACCTCGGAAACGTCCGTCCCGTCTTGACAAATCGACGCACAATAATAGGCACGAGTCAGGAAATCCGAGAATTTCGAAAAACTTTTCGATTCCGCTTCAGCCAAACTCATTAGCGTTAGAGCCGCTTTTCCGAACTGCTTGTTGGCGATTTCTCGTCCGTAACGAAGTTCCTGGAATAATTTGAGTTGGGAAAGAGTGAGAAAATTGGCTTAGAATGGCCCAAAATTGGTGCAAAATGGTCAAAAACAGTCCAAAATAGGCTCAAAATCGTCCAAAATTTGCWAAAAATGGTCAAAAACTCATGAAAAATTGATCCTAAATAGATCTAAATTAGTCAAAAACAGGCTTAAAATAGTTAAAAATTCACTAATTTTTTTAAAGCGAATTTTGAATCTTTTTTATTTGATTTCAGATCATTTTAGGCCGTTTTGGGGCATGTTTTGGATCGATTTTAGTGGATTTTTAGTCATTTTTAGAAGAATTTGGACCATTTTGAGTTATTTTTAGCGAATTTTGGACCGGTTTTGGCCTGTTTCATGAATTTTTAGTGATTTTGAGCCTATTTTGAGGAGATTCGGGCCTGTTCAGGACTGTTTTCGACTATGTTAGGCTTATTTTTGATCATTTTTGACCTATTTCGGACTATTTTAGATTATTTTAGGCTTATTTTCAACCTGTTCAGGCCCATTTTGAATCATTTTCAGCGGATTTTTGACCATTTTAACCGGTTTTCAGCCATTTCCAGCCCCCAAATCTACCTTAAAATTGTCCAAATAGGCATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>502 448 50</canonical_bands>
                <polymorphic_bands>552 448</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGTTGGGAAAGAGTGAGA</pcr_primer_p1>
		<pcr_primer_p2>TTTGGACAATTTTAAGGTAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>593</pcr_amplicon_size>
		<canonical_amplicon>TGAGTTGGGAAAGAGTGAGAAAATTGGCTTAGAATGGCCCAAAATTGGTGCAAAATGGTCAAAAACAGTCCAAAATAGGCTCAAAATCGTCCAAAATTTGCAAAAAATGGTCAAAAACTCATGAAAAATTGATCCTAAATAGATCTAAATTAGTCAAAAACAGGCTTAAAATAGTTAAAAATTCACTAATTTTTTTAAAGCGAATTTTGAATCTTTTTTATTTGATTTCAGATCATTTTAGGCCGTTTTGGGGCATGTTTTGGATCGATTTTAGTGGATTTTTAGTCATTTTTAGAAGAATTTGGACCATTTTGAGTTATTTTTAGCGAATTTTGGACCGGTTTTGGCCTGTTTCATGAATTTTTAGTGATTTTGAGCCTATTTTGAGGAGATTCGGGCCTGTTCAGGACTGTTTTCGACTATGTTAGGCTTATTTTTGATCATTTTTGACCTATTTCGGACTATTTTAGATTATTTTAGGCTTATTTTCAACCTGTTCAGGCCCATTTTGAATCATTTTCAGCGGATTTTTGACCATTTTAACCGGTTTTCAGCCATTTCCAGCCCCCAAATCTACCTTAAAATTGTCCAAA</canonical_amplicon>
		<polymorphic_amplicon>TGAGTTGGGAAAGAGTGAGAAAATTGGCTTAGAATGGCCCAAAATTGGTGCAAAATGGTCAAAAACAGTCCAAAATAGGCTCAAAATCGTCCAAAATTTGCWAAAAATGGTCAAAAACTCATGAAAAATTGATCCTAAATAGATCTAAATTAGTCAAAAACAGGCTTAAAATAGTTAAAAATTCACTAATTTTTTTAAAGCGAATTTTGAATCTTTTTTATTTGATTTCAGATCATTTTAGGCCGTTTTGGGGCATGTTTTGGATCGATTTTAGTGGATTTTTAGTCATTTTTAGAAGAATTTGGACCATTTTGAGTTATTTTTAGCGAATTTTGGACCGGTTTTGGCCTGTTTCATGAATTTTTAGTGATTTTGAGCCTATTTTGAGGAGATTCGGGCCTGTTCAGGACTGTTTTCGACTATGTTAGGCTTATTTTTGATCATTTTTGACCTATTTCGGACTATTTTAGATTATTTTAGGCTTATTTTCAACCTGTTCAGGCCCATTTTGAATCATTTTCAGCGGATTTTTGACCATTTTAACCGGTTTTCAGCCATTTCCAGCCCCCAAATCTACCTTAAAATTGTCCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29941</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>493053</contig_pos>
        <strand>+</strand>
        <context>AGGCTCTTCA[A/G]AACTATGATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGAACTACGATTTGGTGGATATTTGGGCGATCAAAAGGGAGGCTCTTCA</left_flank>
        <right_flank>AACTATGATAAGGCTGTTAAAGGTGAAAAAACGCTGAAAAATGGATATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAAAAATCGCTGAAAATGAGCTGAAACCCGCTGAAAATCGCTGAAAAATTACTCAAAGACAGCGAAAATTGGCTCTAAATAGTCCAAAATGGGTCGTCTAAATTTGGTGAAATTTGGTCGAAAATGACTCTGAAAAGCTCTAAAAACAACCTAAATTGCATAAAATTGCTTCAAAAAGCCCAAATTTGAAGCGGAATGAGCTCAAATGGCTCAAAATTTGCTTTAAAATAGCGGAAATTAACTCTAAATGGTCCAAAATAGTTCAACTTTGGTGAAAATCGGTCGAAAATGACTGTGAAAAGCCCTAAAAACTCCTAAATTGCTTCGAAAATCCCAAAAATGCAATAATTTTCAGTGATGGACCTGATGGAGAACAAGGAACCTGGAAGTGCTGAAAATGGCGGAAAGCGTGGGCGTGGAGCGAGAAGAGTCGTGAATCTTGGATCAACGAACTACGATTTGGTGGATATTTGGGCGATCAAAAGGGAGGCTCTTCAGAACTATGATAAGGCTGTTAAAGGTGAAAAAACGCTGAAAAATGGATATTTTTAGGGAAAATTCATGAAATTTCTGTAAAAAATAGCCCAAAAATGGTCAGATTTGGCTAGAAAAATCGCTCGAAATGAGTGTTTTTAGCAGAAAATAGGTCAAAAACAGTCGGAAAATCACGGATGTTGTCTTAAAAAGTTAAATTTTCGAGCTCAAAAACGCATTTTTCCAGCTTTTTTAACCTAAAAATCTCACTTTTCGCATCTAAAACCACAAATTCTATCGGAAAATGGCACAAAAATTGTATTTTTCAGCTGAAAAATCGAATTTTCAAGGTTTAAAAACCAAAATTTGCGTCTTAAAACTGCCAAATTTGAATCCCTATTCTATGAAAAATGTTTTTAGGTTGAAATTTAACATTTGAGGCCCTTAAAAATTGAATTTTTGAGCCAAAAAATGAAATTTTGGGTTTTAAAACTCCAATTTTCTTGGATTTTCAGACCCAAAAT</canonical>
            <polymorphic>TGAAAAAATCGCTGAAAATGAGCTGAAACCCGCTGAAAATCGCTGAAAAATTACTCAAAGACAGCGAAAATTGGCTCTAAATAGTCCAAAATGGGTCGTCTAAATTTGGTGAAATTTGGTCGAAAATGACTCTGAAAAGCTCTAAAAACAACCTAAATTGCATAAAATTGCTTCAAAAAGCCCAAATTTGAAGCGGAATGAGCTCAAATGGCTCAAAATTTGCTTTAAAATAGCGGAAATTAACTCTAAATGGTCCAAAATAGTTCAACTTTGGTGAAAATCGGTCGAAAATGACTGTGAAAAGCCCTAAAAACTCCTAAATTGCTTCGAAAATCCCAAAAATGCAATAATTTTCAGTGATGGACCTGATGGAGAACAAGGAACCTGGAAGTGCTGAAAATGGCGGAAAGCGTGGGCGTGGAGCGAGAAGAGTCGTGAATCTTGGATCAACGAACTACGATTTGGTGGATATTTGGGCGATCAAAAGGGAGGCTCTTCARAACTATGATAAGGCTGTTAAAGGTGAAAAAACGCTGAAAAATGGATATTTTTAGGGAAAATTCATGAAATTTCTGTAAAAAATAGCCCAAAAATGGTCAGATTTGGCTAGAAAAATCGCTCGAAATGAGTGTTTTTAGCAGAAAATAGGTCAAAAACAGTCGGAAAATCACGGATGTTGTCTTAAAAAGTTAAATTTTCGAGCTCAAAAACGCATTTTTCCAGCTTTTTTAACCTAAAAATCTCACTTTTCGCATCTAAAACCACAAATTCTATCGGAAAATGGCACAAAAATTGTATTTTTCAGCTGAAAAATCGAATTTTCAAGGTTTAAAAACCAAAATTTGCGTCTTAAAACTGCCAAATTTGAATCCCTATTCTATGAAAAATGTTTTTAGGTTGAAATTTAACATTTGAGGCCCTTAAAAATTGAATTTTTGAGCCAAAAAATGAAATTTTGGGTTTTAAAACTCCAATTTTCTTGGATTTTCAGACCCAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>366 214 133 114 100 63 10</canonical_bands>
                <polymorphic_bands>466 214 133 114 63 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATCTTGGATCAACGAACTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTAAGACAACATCCGTGATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATCTTGGATCAACGAACTACGATTTGGTGGATATTTGGGCGATCAAAAGGGAGGCTCTTCAGAACTATGATAAGGCTGTTAAAGGTGAAAAAACGCTGAAAAATGGATATTTTTAGGGAAAATTCATGAAATTTCTGTAAAAAATAGCCCAAAAATGGTCAGATTTGGCTAGAAAAATCGCTCGAAATGAGTGTTTTTAGCAGAAAATAGGTCAAAAACAGTCGGAAAATCACGGATGTTGTCTTAAA</canonical_amplicon>
		<polymorphic_amplicon>GAATCTTGGATCAACGAACTACGATTTGGTGGATATTTGGGCGATCAAAAGGGAGGCTCTTCARAACTATGATAAGGCTGTTAAAGGTGAAAAAACGCTGAAAAATGGATATTTTTAGGGAAAATTCATGAAATTTCTGTAAAAAATAGCCCAAAAATGGTCAGATTTGGCTAGAAAAATCGCTCGAAATGAGTGTTTTTAGCAGAAAATAGGTCAAAAACAGTCGGAAAATCACGGATGTTGTCTTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29942</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>493176</contig_pos>
        <strand>+</strand>
        <context>AAATCGCTCG[A/G]AATKAGTGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGTAAAAAATAGCCCAAAAATGGTCAGATTTGGCTAGAAAAATCGCTCG</left_flank>
        <right_flank>AATGAGTGTTTTTAGCAGAAAATAGGTCAAAAACAGTCGGAAAATCACGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATGACTCTGAAAAGCTCTAAAAACAACCTAAATTGCATAAAATTGCTTCAAAAAGCCCAAATTTGAAGCGGAATGAGCTCAAATGGCTCAAAATTTGCTTTAAAATAGCGGAAATTAACTCTAAATGGTCCAAAATAGTTCAACTTTGGTGAAAATCGGTCGAAAATGACTGTGAAAAGCCCTAAAAACTCCTAAATTGCTTCGAAAATCCCAAAAATGCAATAATTTTCAGTGATGGACCTGATGGAGAACAAGGAACCTGGAAGTGCTGAAAATGGCGGAAAGCGTGGGCGTGGAGCGAGAAGAGTCGTGAATCTTGGATCAACGAACTACGATTTGGTGGATATTTGGGCGATCAAAAGGGAGGCTCTTCAGAACTATGATAAGGCTGTTAAAGGTGAAAAAACGCTGAAAAATGGATATTTTTAGGGAAAATTCATGAAATTTCTGTAAAAAATAGCCCAAAAATGGTCAGATTTGGCTAGAAAAATCGCTCGAAATGAGTGTTTTTAGCAGAAAATAGGTCAAAAACAGTCGGAAAATCACGGATGTTGTCTTAAAAAGTTAAATTTTCGAGCTCAAAAACGCATTTTTCCAGCTTTTTTAACCTAAAAATCTCACTTTTCGCATCTAAAACCACAAATTCTATCGGAAAATGGCACAAAAATTGTATTTTTCAGCTGAAAAATCGAATTTTCAAGGTTTAAAAACCAAAATTTGCGTCTTAAAACTGCCAAATTTGAATCCCTATTCTATGAAAAATGTTTTTAGGTTGAAATTTAACATTTGAGGCCCTTAAAAATTGAATTTTTGAGCCAAAAAATGAAATTTTGGGTTTTAAAACTCCAATTTTCTTGGATTTTCAGACCCAAAATGACATAATTTTAGTCAAAAATGATGATTTGCGGCATTTTCCAGACCCAAAATTCGGAAAAATACGATTTTCAGACAATTTTAGGTGCCAAAAATTCATATTTTGCCGTAAAATTACGATTTTT</canonical>
            <polymorphic>AAATGACTCTGAAAAGCTCTAAAAACAACCTAAATTGCATAAAATTGCTTCAAAAAGCCCAAATTTGAAGCGGAATGAGCTCAAATGGCTCAAAATTTGCTTTAAAATAGCGGAAATTAACTCTAAATGGTCCAAAATAGTTCAACTTTGGTGAAAATCGGTCGAAAATGACTGTGAAAAGCCCTAAAAACTCCTAAATTGCTTCGAAAATCCCAAAAATGCAATAATTTTCAGTGATGGACCTGATGGAGAACAAGGAACCTGGAAGTGCTGAAAATGGCGGAAAGCGTGGGCGTGGAGCGAGAAGAGTCGTGAATCTTGGATCAACGAACTACGATTTGGTGGATATTTGGGCGATCAAAAGGGAGGCTCTTCAGAACTATGATAAGGCTGTTAAAGGTGAAAAAACGCTGAAAAATGGATATTTTTAGGGAAAATTCATGAAATTTCTGTAAAAAATAGCCCAAAAATGGTCAGATTTGGCTAGAAAAATCGCTCGRAATGAGTGTTTTTAGCAGAAAATAGGTCAAAAACAGTCGGAAAATCACGGATGTTGTCTTAAAAAGTTAAATTTTCGAGCTCAAAAACGCATTTTTCCAGCTTTTTTAACCTAAAAATCTCACTTTTCGCATCTAAAACCACAAATTCTATCGGAAAATGGCACAAAAATTGTATTTTTCAGCTGAAAAATCGAATTTTCAAGGTTTAAAAACCAAAATTTGCGTCTTAAAACTGCCAAATTTGAATCCCTATTCTATGAAAAATGTTTTTAGGTTGAAATTTAACATTTGAGGCCCTTAAAAATTGAATTTTTGAGCCAAAAAATGAAATTTTGGGTTTTAAAACTCCAATTTTCTTGGATTTTCAGACCCAAAATGACATAATTTTAGTCAAAAATGATGATTTGCGGCATTTTCCAGACCCAAAATTCGGAAAAATACGATTTTCAGACAATTTTAGGTGCCAAAAATTCATATTTTGCCGTAAAATTACGATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>308 293 163 116 78 42</canonical_bands>
                <polymorphic_bands>371 308 163 116 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATGATAAGGCTGTTAAAGGTG</pcr_primer_p1>
		<pcr_primer_p2>CGAAAAGTGAGATTTTTAGGTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATGATAAGGCTGTTAAAGGTGAAAAAACGCTGAAAAATGGATATTTTTAGGGAAAATTCATGAAATTTCTGTAAAAAATAGCCCAAAAATGGTCAGATTTGGCTAGAAAAATCGCTCGAAATGAGTGTTTTTAGCAGAAAATAGGTCAAAAACAGTCGGAAAATCACGGATGTTGTCTTAAAAAGTTAAATTTTCGAGCTCAAAAACGCATTTTTCCAGCTTTTTTAACCTAAAAATCTCACTTTTCG</canonical_amplicon>
		<polymorphic_amplicon>CTATGATAAGGCTGTTAAAGGTGAAAAAACGCTGAAAAATGGATATTTTTAGGGAAAATTCATGAAATTTCTGTAAAAAATAGCCCAAAAATGGTCAGATTTGGCTAGAAAAATCGCTCGRAATGAGTGTTTTTAGCAGAAAATAGGTCAAAAACAGTCGGAAAATCACGGATGTTGTCTTAAAAAGTTAAATTTTCGAGCTCAAAAACGCATTTTTCCAGCTTTTTTAACCTAAAAATCTCACTTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29943</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>493180</contig_pos>
        <strand>+</strand>
        <context>CGCTCGRAAT[G/T]AGTGTTTTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAAATAGCCCAAAAATGGTCAGATTTGGCTAGAAAAATCGCTCGAAAT</left_flank>
        <right_flank>AGTGTTTTTAGCAGAAAATAGGTCAAAAACAGTCGGAAAATCACGGATGT</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTCTGAAAAGCTCTAAAAACAACCTAAATTGCATAAAATTGCTTCAAAAAGCCCAAATTTGAAGCGGAATGAGCTCAAATGGCTCAAAATTTGCTTTAAAATAGCGGAAATTAACTCTAAATGGTCCAAAATAGTTCAACTTTGGTGAAAATCGGTCGAAAATGACTGTGAAAAGCCCTAAAAACTCCTAAATTGCTTCGAAAATCCCAAAAATGCAATAATTTTCAGTGATGGACCTGATGGAGAACAAGGAACCTGGAAGTGCTGAAAATGGCGGAAAGCGTGGGCGTGGAGCGAGAAGAGTCGTGAATCTTGGATCAACGAACTACGATTTGGTGGATATTTGGGCGATCAAAAGGGAGGCTCTTCAGAACTATGATAAGGCTGTTAAAGGTGAAAAAACGCTGAAAAATGGATATTTTTAGGGAAAATTCATGAAATTTCTGTAAAAAATAGCCCAAAAATGGTCAGATTTGGCTAGAAAAATCGCTCGAAATGAGTGTTTTTAGCAGAAAATAGGTCAAAAACAGTCGGAAAATCACGGATGTTGTCTTAAAAAGTTAAATTTTCGAGCTCAAAAACGCATTTTTCCAGCTTTTTTAACCTAAAAATCTCACTTTTCGCATCTAAAACCACAAATTCTATCGGAAAATGGCACAAAAATTGTATTTTTCAGCTGAAAAATCGAATTTTCAAGGTTTAAAAACCAAAATTTGCGTCTTAAAACTGCCAAATTTGAATCCCTATTCTATGAAAAATGTTTTTAGGTTGAAATTTAACATTTGAGGCCCTTAAAAATTGAATTTTTGAGCCAAAAAATGAAATTTTGGGTTTTAAAACTCCAATTTTCTTGGATTTTCAGACCCAAAATGACATAATTTTAGTCAAAAATGATGATTTGCGGCATTTTCCAGACCCAAAATTCGGAAAAATACGATTTTCAGACAATTTTAGGTGCCAAAAATTCATATTTTGCCGTAAAATTACGATTTTTGAGT</canonical>
            <polymorphic>GACTCTGAAAAGCTCTAAAAACAACCTAAATTGCATAAAATTGCTTCAAAAAGCCCAAATTTGAAGCGGAATGAGCTCAAATGGCTCAAAATTTGCTTTAAAATAGCGGAAATTAACTCTAAATGGTCCAAAATAGTTCAACTTTGGTGAAAATCGGTCGAAAATGACTGTGAAAAGCCCTAAAAACTCCTAAATTGCTTCGAAAATCCCAAAAATGCAATAATTTTCAGTGATGGACCTGATGGAGAACAAGGAACCTGGAAGTGCTGAAAATGGCGGAAAGCGTGGGCGTGGAGCGAGAAGAGTCGTGAATCTTGGATCAACGAACTACGATTTGGTGGATATTTGGGCGATCAAAAGGGAGGCTCTTCAGAACTATGATAAGGCTGTTAAAGGTGAAAAAACGCTGAAAAATGGATATTTTTAGGGAAAATTCATGAAATTTCTGTAAAAAATAGCCCAAAAATGGTCAGATTTGGCTAGAAAAATCGCTCGAAATKAGTGTTTTTAGCAGAAAATAGGTCAAAAACAGTCGGAAAATCACGGATGTTGTCTTAAAAAGTTAAATTTTCGAGCTCAAAAACGCATTTTTCCAGCTTTTTTAACCTAAAAATCTCACTTTTCGCATCTAAAACCACAAATTCTATCGGAAAATGGCACAAAAATTGTATTTTTCAGCTGAAAAATCGAATTTTCAAGGTTTAAAAACCAAAATTTGCGTCTTAAAACTGCCAAATTTGAATCCCTATTCTATGAAAAATGTTTTTAGGTTGAAATTTAACATTTGAGGCCCTTAAAAATTGAATTTTTGAGCCAAAAAATGAAATTTTGGGTTTTAAAACTCCAATTTTCTTGGATTTTCAGACCCAAAATGACATAATTTTAGTCAAAAATGATGATTTGCGGCATTTTCCAGACCCAAAATTCGGAAAAATACGATTTTCAGACAATTTTAGGTGCCAAAAATTCATATTTTGCCGTAAAATTACGATTTTTGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATGATAAGGCTGTTAAAGGTG</pcr_primer_p1>
		<pcr_primer_p2>CGAAAAGTGAGATTTTTAGGTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATGATAAGGCTGTTAAAGGTGAAAAAACGCTGAAAAATGGATATTTTTAGGGAAAATTCATGAAATTTCTGTAAAAAATAGCCCAAAAATGGTCAGATTTGGCTAGAAAAATCGCTCGAAATGAGTGTTTTTAGCAGAAAATAGGTCAAAAACAGTCGGAAAATCACGGATGTTGTCTTAAAAAGTTAAATTTTCGAGCTCAAAAACGCATTTTTCCAGCTTTTTTAACCTAAAAATCTCACTTTTCG</canonical_amplicon>
		<polymorphic_amplicon>CTATGATAAGGCTGTTAAAGGTGAAAAAACGCTGAAAAATGGATATTTTTAGGGAAAATTCATGAAATTTCTGTAAAAAATAGCCCAAAAATGGTCAGATTTGGCTAGAAAAATCGCTCGAAATKAGTGTTTTTAGCAGAAAATAGGTCAAAAACAGTCGGAAAATCACGGATGTTGTCTTAAAAAGTTAAATTTTCGAGCTCAAAAACGCATTTTTCCAGCTTTTTTAACCTAAAAATCTCACTTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29944</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>494911</contig_pos>
        <strand>+</strand>
        <context>ACGATGACAT[C/T]TACAGTACTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACAGCTCTTTACCCTTCTGAAGTATGATTAACAGTAGCTACGATGACAT</left_flank>
        <right_flank>TACAGTACTCCCAGCCACACAATATCCTCTATTTCCAGATTGTGTACGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGAAATTTCGAAATTTTGATCTTCAAAATCACGAAAATCGCCCAGAAATCATGATTTTCAAAAAAAGTAATTTTAGCTACAGTAACCTTAGAAGATGTGCAATCGAGTTACTGTAGACGACAAAAAAGTTATGATTGGATTACGGTAGGAGAGGAAGGTTACTGATAATGATGATCGTTTTGACATCTACAGTACCTCCCCAGCCACACGACATCCTCCGTTTCCAGATTGTCTACAGTAACCCAAACTGAATAACGATCTACAGTAGTCAAACTTACTGTAACTAGGGTTACTGTAGTTCTAACTGTTAACGTAGACGTCCTAATGCAAGCTACAGTAACCCCAAAATGCTGATAAGGTCTACAGTATCCAAGACAACAGTAAGATATAAAGCTCTGGCTTGGGATACGGTAGATGTTACTCTAGCTAGGATTACTGTAGCCTAGATTACAGCTCTTTACCCTTCTGAAGTATGATTAACAGTAGCTACGATGACATCTACAGTACTCCCAGCCACACAATATCCTCTATTTCCAGATTGTGTACGATCACGAAACGCTGATTTCCCACGACGACTACGCGAAGAATGTGGGCGAATTCACTCTGCCAGGCGCCAGATGGATTCCGGATAACAAGGAGTTGGCGGCGAACTTTGGTGTCGCTGATGTAGAAATCGAGCTGGATGAGGAGCAGGGAAAAGAACAGATCAACGCTTATGGACCGTATACGGATCCCCTGTCGGGTCGTGAAGTCGTCGCACCGCCTCGTTGGTTCGTCGAACAGGAAGCTACTCGACAGCATCTGGAGATTCAGTCACGTGCCACGTCACGAGCCTCGAAAGCAGCGATGAGGGATTCACAGGGAACACAGGTGAGAGATTTTGGAAATTTGAGGCGTTTTGGGTTACTGTAGCTCTTATTGGAGCTACCGTAATCCGATCTACAGTATCCCTGACCACTGTGAGACAAGCTTCGATTACTGTAGATTTTAGTTTGAAAG</canonical>
            <polymorphic>GTGAAATTTCGAAATTTTGATCTTCAAAATCACGAAAATCGCCCAGAAATCATGATTTTCAAAAAAAGTAATTTTAGCTACAGTAACCTTAGAAGATGTGCAATCGAGTTACTGTAGACGACAAAAAAGTTATGATTGGATTACGGTAGGAGAGGAAGGTTACTGATAATGATGATCGTTTTGACATCTACAGTACCTCCCCAGCCACACGACATCCTCCGTTTCCAGATTGTCTACAGTAACCCAAACTGAATAACGATCTACAGTAGTCAAACTTACTGTAACTAGGGTTACTGTAGTTCTAACTGTTAACGTAGACGTCCTAATGCAAGCTACAGTAACCCCAAAATGCTGATAAGGTCTACAGTATCCAAGACAACAGTAAGATATAAAGCTCTGGCTTGGGATACGGTAGATGTTACTCTAGCTAGGATTACTGTAGCCTAGATTACAGCTCTTTACCCTTCTGAAGTATGATTAACAGTAGCTACGATGACATYTACAGTACTCCCAGCCACACAATATCCTCTATTTCCAGATTGTGTACGATCACGAAACGCTGATTTCCCACGACGACTACGCGAAGAATGTGGGCGAATTCACTCTGCCAGGCGCCAGATGGATTCCGGATAACAAGGAGTTGGCGGCGAACTTTGGTGTCGCTGATGTAGAAATCGAGCTGGATGAGGAGCAGGGAAAAGAACAGATCAACGCTTATGGACCGTATACGGATCCCCTGTCGGGTCGTGAAGTCGTCGCACCGCCTCGTTGGTTCGTCGAACAGGAAGCTACTCGACAGCATCTGGAGATTCAGTCACGTGCCACGTCACGAGCCTCGAAAGCAGCGATGAGGGATTCACAGGGAACACAGGTGAGAGATTTTGGAAATTTGAGGCGTTTTGGGTTACTGTAGCTCTTATTGGAGCTACCGTAATCCGATCTACAGTATCCCTGACCACTGTGAGACAAGCTTCGATTACTGTAGATTTTAGTTTGAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>408 78 76 75 63 46 39 39 34 33 33 29 27 20</canonical_bands>
                <polymorphic_bands>471 78 76 75 46 39 39 34 33 33 29 27 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTTAACGTAGACGTCCTAATG</pcr_primer_p1>
		<pcr_primer_p2>TCGTGATCGTACACAATCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGTTAACGTAGACGTCCTAATGCAAGCTACAGTAACCCCAAAATGCTGATAAGGTCTACAGTATCCAAGACAACAGTAAGATATAAAGCTCTGGCTTGGGATACGGTAGATGTTACTCTAGCTAGGATTACTGTAGCCTAGATTACAGCTCTTTACCCTTCTGAAGTATGATTAACAGTAGCTACGATGACATCTACAGTACTCCCAGCCACACAATATCCTCTATTTCCAGATTGTGTACGATCACGA</canonical_amplicon>
		<polymorphic_amplicon>CTGTTAACGTAGACGTCCTAATGCAAGCTACAGTAACCCCAAAATGCTGATAAGGTCTACAGTATCCAAGACAACAGTAAGATATAAAGCTCTGGCTTGGGATACGGTAGATGTTACTCTAGCTAGGATTACTGTAGCCTAGATTACAGCTCTTTACCCTTCTGAAGTATGATTAACAGTAGCTACGATGACATYTACAGTACTCCCAGCCACACAATATCCTCTATTTCCAGATTGTGTACGATCACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29945</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>537448</contig_pos>
        <strand></strand>
        <context>agctatcaaa[A/T]ttttgtcaac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTACGCCAACTTTGAGCTCAATTATCTCACTTCCCATGAGAGCTATCAAA</left_flank>
        <right_flank>TTTTGTCAACTGATAAAATGTTGTTGATATTATGATAAACAATTTATCAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGGACAGCCAGAGCGGGATGGGATGGGAAAAAAAGAAAGTCTTGGCACAATGCCAAAAAGGGGCGGAGTCTCGCCACCTAGTGAGAAAAAAAGGGCGCCGCTGGCCGCGAGGTCATAAATCAGATGGAAACGGATGCGAAGAAGTTTGAAATTTCAAAAAAAAAAAGAAAATTTAAAGGGACAGACAAATTTTAAACAAATTAGAATTCAAAAATTCAGAAAAGGGCTCTTTTCCCCTTCTGCTCCGTTTTGTGCATCTTTTCCGCTTTCTCCAAAATAGGCCACGCCCCCTTTTTAAGGGGAGGGGCCTCTCTTTTTGGGGTGCCCTTTTTGGAGCACTTAAATTAACGAAAATGGGAATTTTTGAGGATTACTGTAGCCAAGTGTACAGTACTTGGGATTACTGTGCCGATCATACAGTCTCGATGTATACCACATCCCGTATTTCCTACGCCAACTTTGAGCTCAATTATCTCACTTCCCATGAGAGCTATCAAAATTTTGTCAACTGATAAAATGTTGTTGATATTATGATAAACAATTTATCAGTTGACAAAACTTTGATATCTTTTGTAGGAGCCGAGATAATTGAGCTCAACGTTGACAGGGGTTCTATTAGAGAGGGTAGAGAGGGGTACGGTGTGTGAGGAATTTTTAAAAGCTTGAAATTCCGAAATTTTGGCAGTTTCTGCCACAAAAACCTCATCTCATTGAAATTGGGAAGGATTAGTAGAAAACAATTGGTGTCCCACACATACTCAGAAAAAGGGTCCACCCGATGAAAAAAGAAAAATTAAAACGGATAGAGAGTATCCGAGCCCGGAGCCCGGGTCGCATTTCAAAGGGGACTACGACAGGTGGCACTATTCGGCGGATACGTGACTCATTGATTGATTGGAAGAAGAGCTCCTCTAGGGGCGGAAGAAAGATAGAGTGATGGATCTACTAGGGACGGGATAGAACAACACTCTTTGGGCCTTCTTCCTTTAAAGGGACATA</canonical>
            <polymorphic>GCGGACAGCCAGAGCGGGATGGGATGGGAAAAAAAGAAAGTCTTGGCACAATGCCAAAAAGGGGCGGAGTCTCGCCACCTAGTGAGAAAAAAAGGGCGCCGCTGGCCGCGAGGTCATAAATCAGATGGAAACGGATGCGAAGAAGTTTGAAATTTCAAAAAAAAAAAGAAAATTTAAAGGGACAGACAAATTTTAAACAAATTAGAATTCAAAAATTCAGAAAAGGGCTCTTTTCCCCTTCTGCTCCGTTTTGTGCATCTTTTCCGCTTTCTCCAAAATAGGCCACGCCCCCTTTTTAAGGGGAGGGGCCTCTCTTTTTGGGGTGCCCTTTTTGGAGCACTTAAATTAACGAAAATGGGAATTTTTGAGGATTACTGTAGCCAAGTGTACAGTACTTGGGATTACTGTGCCGATCATACAGTCTCGATGTATACCACATCCCGTATTTCCTACGCCAACTTTGAGCTCAATTATCTCACTTCCCATGAGAGCTATCAAAWTTTTGTCAACTGATAAAATGTTGTTGATATTATGATAAACAATTTATCAGTTGACAAAACTTTGATATCTTTTGTAGGAGCCGAGATAATTGAGCTCAACGTTGACAGGGGTTCTATTAGAGAGGGTAGAGAGGGGTACGGTGTGTGAGGAATTTTTAAAAGCTTGAAATTCCGAAATTTTGGCAGTTTCTGCCACAAAAACCTCATCTCATTGAAATTGGGAAGGATTAGTAGAAAACAATTGGTGTCCCACACATACTCAGAAAAAGGGTCCACCCGATGAAAAAAGAAAAATTAAAACGGATAGAGAGTATCCGAGCCCGGAGCCCGGGTCGCATTTCAAAGGGGACTACGACAGGTGGCACTATTCGGCGGATACGTGACTCATTGATTGATTGGAAGAAGAGCTCCTCTAGGGGCGGAAGAAAGATAGAGTGATGGATCTACTAGGGACGGGATAGAACAACACTCTTTGGGCCTTCTTCCTTTAAAGGGACATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>325 152 150 146 139 20 18 17 17 8 8</canonical_bands>
                <polymorphic_bands>325 291 150 146 20 18 17 17 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>208 150 130 109 63 53 47 42 40 30 24 20 18 17 16 11 8 8 6</canonical_bands>
                <polymorphic_bands>208 150 130 109 72 63 53 47 40 24 20 18 17 16 11 8 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTATACCACATCCCGTATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAGCTTTTAAAAATTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TGTATACCACATCCCGTATTTCCTACGCCAACTTTGAGCTCAATTATCTCACTTCCCATGAGAGCTATCAAAATTTTGTCAACTGATAAAATGTTGTTGATATTATGATAAACAATTTATCAGTTGACAAAACTTTGATATCTTTTGTAGGAGCCGAGATAATTGAGCTCAACGTTGACAGGGGTTCTATTAGAGAGGGTAGAGAGGGGTACGGTGTGTGAGGAATTTTTAAAAGCTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>TGTATACCACATCCCGTATTTCCTACGCCAACTTTGAGCTCAATTATCTCACTTCCCATGAGAGCTATCAAAWTTTTGTCAACTGATAAAATGTTGTTGATATTATGATAAACAATTTATCAGTTGACAAAACTTTGATATCTTTTGTAGGAGCCGAGATAATTGAGCTCAACGTTGACAGGGGTTCTATTAGAGAGGGTAGAGAGGGGTACGGTGTGTGAGGAATTTTTAAAAGCTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29946</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>537498</contig_pos>
        <strand></strand>
        <context>caatttatca[G/T]ttgacaaaac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTTGTCAACTGATAAAATGTTGTTGATATTATGATAAACAATTTATCA</left_flank>
        <right_flank>TTGACAAAACTTTGATATCTTTTGTAGGAGCCGAGATAATTGAGCTCAAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGCCAAAAAGGGGCGGAGTCTCGCCACCTAGTGAGAAAAAAAGGGCGCCGCTGGCCGCGAGGTCATAAATCAGATGGAAACGGATGCGAAGAAGTTTGAAATTTCAAAAAAAAAAAGAAAATTTAAAGGGACAGACAAATTTTAAACAAATTAGAATTCAAAAATTCAGAAAAGGGCTCTTTTCCCCTTCTGCTCCGTTTTGTGCATCTTTTCCGCTTTCTCCAAAATAGGCCACGCCCCCTTTTTAAGGGGAGGGGCCTCTCTTTTTGGGGTGCCCTTTTTGGAGCACTTAAATTAACGAAAATGGGAATTTTTGAGGATTACTGTAGCCAAGTGTACAGTACTTGGGATTACTGTGCCGATCATACAGTCTCGATGTATACCACATCCCGTATTTCCTACGCCAACTTTGAGCTCAATTATCTCACTTCCCATGAGAGCTATCAAAATTTTGTCAACTGATAAAATGTTGTTGATATTATGATAAACAATTTATCAGTTGACAAAACTTTGATATCTTTTGTAGGAGCCGAGATAATTGAGCTCAACGTTGACAGGGGTTCTATTAGAGAGGGTAGAGAGGGGTACGGTGTGTGAGGAATTTTTAAAAGCTTGAAATTCCGAAATTTTGGCAGTTTCTGCCACAAAAACCTCATCTCATTGAAATTGGGAAGGATTAGTAGAAAACAATTGGTGTCCCACACATACTCAGAAAAAGGGTCCACCCGATGAAAAAAGAAAAATTAAAACGGATAGAGAGTATCCGAGCCCGGAGCCCGGGTCGCATTTCAAAGGGGACTACGACAGGTGGCACTATTCGGCGGATACGTGACTCATTGATTGATTGGAAGAAGAGCTCCTCTAGGGGCGGAAGAAAGATAGAGTGATGGATCTACTAGGGACGGGATAGAACAACACTCTTTGGGCCTTCTTCCTTTAAAGGGACATATCTCTAAAACCAAAAAAGCAATCTGAAAGTGGTTCACTACAAAAATGTAA</canonical>
            <polymorphic>ATGCCAAAAAGGGGCGGAGTCTCGCCACCTAGTGAGAAAAAAAGGGCGCCGCTGGCCGCGAGGTCATAAATCAGATGGAAACGGATGCGAAGAAGTTTGAAATTTCAAAAAAAAAAAGAAAATTTAAAGGGACAGACAAATTTTAAACAAATTAGAATTCAAAAATTCAGAAAAGGGCTCTTTTCCCCTTCTGCTCCGTTTTGTGCATCTTTTCCGCTTTCTCCAAAATAGGCCACGCCCCCTTTTTAAGGGGAGGGGCCTCTCTTTTTGGGGTGCCCTTTTTGGAGCACTTAAATTAACGAAAATGGGAATTTTTGAGGATTACTGTAGCCAAGTGTACAGTACTTGGGATTACTGTGCCGATCATACAGTCTCGATGTATACCACATCCCGTATTTCCTACGCCAACTTTGAGCTCAATTATCTCACTTCCCATGAGAGCTATCAAAATTTTGTCAACTGATAAAATGTTGTTGATATTATGATAAACAATTTATCAKTTGACAAAACTTTGATATCTTTTGTAGGAGCCGAGATAATTGAGCTCAACGTTGACAGGGGTTCTATTAGAGAGGGTAGAGAGGGGTACGGTGTGTGAGGAATTTTTAAAAGCTTGAAATTCCGAAATTTTGGCAGTTTCTGCCACAAAAACCTCATCTCATTGAAATTGGGAAGGATTAGTAGAAAACAATTGGTGTCCCACACATACTCAGAAAAAGGGTCCACCCGATGAAAAAAGAAAAATTAAAACGGATAGAGAGTATCCGAGCCCGGAGCCCGGGTCGCATTTCAAAGGGGACTACGACAGGTGGCACTATTCGGCGGATACGTGACTCATTGATTGATTGGAAGAAGAGCTCCTCTAGGGGCGGAAGAAAGATAGAGTGATGGATCTACTAGGGACGGGATAGAACAACACTCTTTGGGCCTTCTTCCTTTAAAGGGACATATCTCTAAAACCAAAAAAGCAATCTGAAAGTGGTTCACTACAAAAATGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>457 447 51 45</canonical_bands>
                <polymorphic_bands>457 447 96</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>337 261 170 76 51 45 44 16</canonical_bands>
                <polymorphic_bands>337 261 170 96 76 44 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTATACCACATCCCGTATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAGCTTTTAAAAATTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TGTATACCACATCCCGTATTTCCTACGCCAACTTTGAGCTCAATTATCTCACTTCCCATGAGAGCTATCAAAATTTTGTCAACTGATAAAATGTTGTTGATATTATGATAAACAATTTATCAGTTGACAAAACTTTGATATCTTTTGTAGGAGCCGAGATAATTGAGCTCAACGTTGACAGGGGTTCTATTAGAGAGGGTAGAGAGGGGTACGGTGTGTGAGGAATTTTTAAAAGCTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>TGTATACCACATCCCGTATTTCCTACGCCAACTTTGAGCTCAATTATCTCACTTCCCATGAGAGCTATCAAAATTTTGTCAACTGATAAAATGTTGTTGATATTATGATAAACAATTTATCAKTTGACAAAACTTTGATATCTTTTGTAGGAGCCGAGATAATTGAGCTCAACGTTGACAGGGGTTCTATTAGAGAGGGTAGAGAGGGGTACGGTGTGTGAGGAATTTTTAAAAGCTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29947</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>537517</contig_pos>
        <strand></strand>
        <context>actttgatat[C/A]ttttgtagga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TGTTGTTGATATTATGATAAACAATTTATCAGTTGACAAAACTTTGATAT</left_flank>
        <right_flank>TTTTGTAGGAGCCGAGATAATTGAGCTCAACGTTGACAGGGGTTCTATTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCGCCACCTAGTGAGAAAAAAAGGGCGCCGCTGGCCGCGAGGTCATAAATCAGATGGAAACGGATGCGAAGAAGTTTGAAATTTCAAAAAAAAAAAGAAAATTTAAAGGGACAGACAAATTTTAAACAAATTAGAATTCAAAAATTCAGAAAAGGGCTCTTTTCCCCTTCTGCTCCGTTTTGTGCATCTTTTCCGCTTTCTCCAAAATAGGCCACGCCCCCTTTTTAAGGGGAGGGGCCTCTCTTTTTGGGGTGCCCTTTTTGGAGCACTTAAATTAACGAAAATGGGAATTTTTGAGGATTACTGTAGCCAAGTGTACAGTACTTGGGATTACTGTGCCGATCATACAGTCTCGATGTATACCACATCCCGTATTTCCTACGCCAACTTTGAGCTCAATTATCTCACTTCCCATGAGAGCTATCAAAATTTTGTCAACTGATAAAATGTTGTTGATATTATGATAAACAATTTATCAGTTGACAAAACTTTGATATCTTTTGTAGGAGCCGAGATAATTGAGCTCAACGTTGACAGGGGTTCTATTAGAGAGGGTAGAGAGGGGTACGGTGTGTGAGGAATTTTTAAAAGCTTGAAATTCCGAAATTTTGGCAGTTTCTGCCACAAAAACCTCATCTCATTGAAATTGGGAAGGATTAGTAGAAAACAATTGGTGTCCCACACATACTCAGAAAAAGGGTCCACCCGATGAAAAAAGAAAAATTAAAACGGATAGAGAGTATCCGAGCCCGGAGCCCGGGTCGCATTTCAAAGGGGACTACGACAGGTGGCACTATTCGGCGGATACGTGACTCATTGATTGATTGGAAGAAGAGCTCCTCTAGGGGCGGAAGAAAGATAGAGTGATGGATCTACTAGGGACGGGATAGAACAACACTCTTTGGGCCTTCTTCCTTTAAAGGGACATATCTCTAAAACCAAAAAAGCAATCTGAAAGTGGTTCACTACAAAAATGTAAAGCATAAAATTTTGCAATT</canonical>
            <polymorphic>TCTCGCCACCTAGTGAGAAAAAAAGGGCGCCGCTGGCCGCGAGGTCATAAATCAGATGGAAACGGATGCGAAGAAGTTTGAAATTTCAAAAAAAAAAAGAAAATTTAAAGGGACAGACAAATTTTAAACAAATTAGAATTCAAAAATTCAGAAAAGGGCTCTTTTCCCCTTCTGCTCCGTTTTGTGCATCTTTTCCGCTTTCTCCAAAATAGGCCACGCCCCCTTTTTAAGGGGAGGGGCCTCTCTTTTTGGGGTGCCCTTTTTGGAGCACTTAAATTAACGAAAATGGGAATTTTTGAGGATTACTGTAGCCAAGTGTACAGTACTTGGGATTACTGTGCCGATCATACAGTCTCGATGTATACCACATCCCGTATTTCCTACGCCAACTTTGAGCTCAATTATCTCACTTCCCATGAGAGCTATCAAAATTTTGTCAACTGATAAAATGTTGTTGATATTATGATAAACAATTTATCAGTTGACAAAACTTTGATATMTTTTGTAGGAGCCGAGATAATTGAGCTCAACGTTGACAGGGGTTCTATTAGAGAGGGTAGAGAGGGGTACGGTGTGTGAGGAATTTTTAAAAGCTTGAAATTCCGAAATTTTGGCAGTTTCTGCCACAAAAACCTCATCTCATTGAAATTGGGAAGGATTAGTAGAAAACAATTGGTGTCCCACACATACTCAGAAAAAGGGTCCACCCGATGAAAAAAGAAAAATTAAAACGGATAGAGAGTATCCGAGCCCGGAGCCCGGGTCGCATTTCAAAGGGGACTACGACAGGTGGCACTATTCGGCGGATACGTGACTCATTGATTGATTGGAAGAAGAGCTCCTCTAGGGGCGGAAGAAAGATAGAGTGATGGATCTACTAGGGACGGGATAGAACAACACTCTTTGGGCCTTCTTCCTTTAAAGGGACATATCTCTAAAACCAAAAAAGCAATCTGAAAGTGGTTCACTACAAAAATGTAAAGCATAAAATTTTGCAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTATACCACATCCCGTATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAGCTTTTAAAAATTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TGTATACCACATCCCGTATTTCCTACGCCAACTTTGAGCTCAATTATCTCACTTCCCATGAGAGCTATCAAAATTTTGTCAACTGATAAAATGTTGTTGATATTATGATAAACAATTTATCAGTTGACAAAACTTTGATATCTTTTGTAGGAGCCGAGATAATTGAGCTCAACGTTGACAGGGGTTCTATTAGAGAGGGTAGAGAGGGGTACGGTGTGTGAGGAATTTTTAAAAGCTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>TGTATACCACATCCCGTATTTCCTACGCCAACTTTGAGCTCAATTATCTCACTTCCCATGAGAGCTATCAAAATTTTGTCAACTGATAAAATGTTGTTGATATTATGATAAACAATTTATCAGTTGACAAAACTTTGATATMTTTTGTAGGAGCCGAGATAATTGAGCTCAACGTTGACAGGGGTTCTATTAGAGAGGGTAGAGAGGGGTACGGTGTGTGAGGAATTTTTAAAAGCTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29948</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>556570</contig_pos>
        <strand>+</strand>
        <context>GTTTTCATCG[A/G]TTTTCAGTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCG</left_flank>
        <right_flank>TTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGCTATGGAACAGCAGACCATCTCGATTGCTAAGGCTGGAATCACGACAACTCTCAACTCTCGTTGCTCAGTTTTGGCGGCGGCCAACTCGGTGTATGGACGATGGGATGAGAGCAGAGGCGATGAGAATATCGATTTCATGCCGACGATTTTGTCGCGTTTCGATATGATCTATATTGTCAAGGATACGCATGATGTTAATAAGGATTCGGTTAGTAGAAGAGGCTCTTGGCTGGAACATGTCTGAAAATCGGTGAAAAATCCCAGAAAATGAACATTTTTGACCCTATTTTTCAGCAATTTTTTCCCAAATTTCCTTAAAATTCTACTTGAAATTTCCAGCTAATTTAGGAAATTCCTCTAAAAAATCAGACAATTGGGTCCTAAAACTTCAAAATTTAGCATTTTCTGACACAAAAGTTCGGCTAATTTCAGAAGTTTCAGCCTCATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGAGCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAA</canonical>
            <polymorphic>AGGCTATGGAACAGCAGACCATCTCGATTGCTAAGGCTGGAATCACGACAACTCTCAACTCTCGTTGCTCAGTTTTGGCGGCGGCCAACTCGGTGTATGGACGATGGGATGAGAGCAGAGGCGATGAGAATATCGATTTCATGCCGACGATTTTGTCGCGTTTCGATATGATCTATATTGTCAAGGATACGCATGATGTTAATAAGGATTCGGTTAGTAGAAGAGGCTCTTGGCTGGAACATGTCTGAAAATCGGTGAAAAATCCCAGAAAATGAACATTTTTGACCCTATTTTTCAGCAATTTTTTCCCAAATTTCCTTAAAATTCTACTTGAAATTTCCAGCTAATTTAGGAAATTCCTCTAAAAAATCAGACAATTGGGTCCTAAAACTTCAAAATTTAGCATTTTCTGACACAAAAGTTCGGCTAATTTCAGAAGTTTCAGCCTCATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGRTTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGAGCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>410 364 133 93</canonical_bands>
                <polymorphic_bands>457 410 133</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>336 334 109 73 64 30 29 25</canonical_bands>
                <polymorphic_bands>363 336 109 73 64 30 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTCAAAATTTAGCATTTTCTG</pcr_primer_p1>
		<pcr_primer_p2>TTGGATCTTTGAACCCTATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTTCAAAATTTAGCATTTTCTGACACAAAAGTTCGGCTAATTTCAGAAGTTTCAGCCTCATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAA</canonical_amplicon>
		<polymorphic_amplicon>ACTTCAAAATTTAGCATTTTCTGACACAAAAGTTCGGCTAATTTCAGAAGTTTCAGCCTCATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGRTTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29949</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>556602</contig_pos>
        <strand>+</strand>
        <context>AAATTCGACT[C/T]AAAATCGGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACT</left_flank>
        <right_flank>AAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGCTGGAATCACGACAACTCTCAACTCTCGTTGCTCAGTTTTGGCGGCGGCCAACTCGGTGTATGGACGATGGGATGAGAGCAGAGGCGATGAGAATATCGATTTCATGCCGACGATTTTGTCGCGTTTCGATATGATCTATATTGTCAAGGATACGCATGATGTTAATAAGGATTCGGTTAGTAGAAGAGGCTCTTGGCTGGAACATGTCTGAAAATCGGTGAAAAATCCCAGAAAATGAACATTTTTGACCCTATTTTTCAGCAATTTTTTCCCAAATTTCCTTAAAATTCTACTTGAAATTTCCAGCTAATTTAGGAAATTCCTCTAAAAAATCAGACAATTGGGTCCTAAAACTTCAAAATTTAGCATTTTCTGACACAAAAGTTCGGCTAATTTCAGAAGTTTCAGCCTCATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGAGCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAAATCGCTGAAAATTGGGTCCAAA</canonical>
            <polymorphic>AAGGCTGGAATCACGACAACTCTCAACTCTCGTTGCTCAGTTTTGGCGGCGGCCAACTCGGTGTATGGACGATGGGATGAGAGCAGAGGCGATGAGAATATCGATTTCATGCCGACGATTTTGTCGCGTTTCGATATGATCTATATTGTCAAGGATACGCATGATGTTAATAAGGATTCGGTTAGTAGAAGAGGCTCTTGGCTGGAACATGTCTGAAAATCGGTGAAAAATCCCAGAAAATGAACATTTTTGACCCTATTTTTCAGCAATTTTTTCCCAAATTTCCTTAAAATTCTACTTGAAATTTCCAGCTAATTTAGGAAATTCCTCTAAAAAATCAGACAATTGGGTCCTAAAACTTCAAAATTTAGCATTTTCTGACACAAAAGTTCGGCTAATTTCAGAAGTTTCAGCCTCATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACTYAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGAGCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAAATCGCTGAAAATTGGGTCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTCAAAATTTAGCATTTTCTG</pcr_primer_p1>
		<pcr_primer_p2>TTGGATCTTTGAACCCTATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTTCAAAATTTAGCATTTTCTGACACAAAAGTTCGGCTAATTTCAGAAGTTTCAGCCTCATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAA</canonical_amplicon>
		<polymorphic_amplicon>ACTTCAAAATTTAGCATTTTCTGACACAAAAGTTCGGCTAATTTCAGAAGTTTCAGCCTCATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACTYAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29950</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>556653</contig_pos>
        <strand></strand>
        <context>TCCGGAAACA[T/C]GAAAAATCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACA</left_flank>
        <right_flank>GAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCAACTCGGTGTATGGACGATGGGATGAGAGCAGAGGCGATGAGAATATCGATTTCATGCCGACGATTTTGTCGCGTTTCGATATGATCTATATTGTCAAGGATACGCATGATGTTAATAAGGATTCGGTTAGTAGAAGAGGCTCTTGGCTGGAACATGTCTGAAAATCGGTGAAAAATCCCAGAAAATGAACATTTTTGACCCTATTTTTCAGCAATTTTTTCCCAAATTTCCTTAAAATTCTACTTGAAATTTCCAGCTAATTTAGGAAATTCCTCTAAAAAATCAGACAATTGGGTCCTAAAACTTCAAAATTTAGCATTTTCTGACACAAAAGTTCGGCTAATTTCAGAAGTTTCAGCCTCATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGAGCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAAATCGCTGAAAATTGGGTCCAAAAATCCCAGAAAATGAACGTTTTTGGCCCCAAGTTTCAGCAATTTTTCTGCT</canonical>
            <polymorphic>GCCAACTCGGTGTATGGACGATGGGATGAGAGCAGAGGCGATGAGAATATCGATTTCATGCCGACGATTTTGTCGCGTTTCGATATGATCTATATTGTCAAGGATACGCATGATGTTAATAAGGATTCGGTTAGTAGAAGAGGCTCTTGGCTGGAACATGTCTGAAAATCGGTGAAAAATCCCAGAAAATGAACATTTTTGACCCTATTTTTCAGCAATTTTTTCCCAAATTTCCTTAAAATTCTACTTGAAATTTCCAGCTAATTTAGGAAATTCCTCTAAAAAATCAGACAATTGGGTCCTAAAACTTCAAAATTTAGCATTTTCTGACACAAAAGTTCGGCTAATTTCAGAAGTTTCAGCCTCATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACAYGAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGAGCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAAATCGCTGAAAATTGGGTCCAAAAATCCCAGAAAATGAACGTTTTTGGCCCCAAGTTTCAGCAATTTTTCTGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 341 57 52 48</canonical_bands>
                <polymorphic_bands>843 57 52 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTCAAAATTTAGCATTTTCTG</pcr_primer_p1>
		<pcr_primer_p2>TTGGATCTTTGAACCCTATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTTCAAAATTTAGCATTTTCTGACACAAAAGTTCGGCTAATTTCAGAAGTTTCAGCCTCATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAA</canonical_amplicon>
		<polymorphic_amplicon>ACTTCAAAATTTAGCATTTTCTGACACAAAAGTTCGGCTAATTTCAGAAGTTTCAGCCTCATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACAYGAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29951</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>556674</contig_pos>
        <strand>+</strand>
        <context>TCTGAAATTT[A/T]AAAAAAATGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTT</left_flank>
        <right_flank>AAAAAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGGATGAGAGCAGAGGCGATGAGAATATCGATTTCATGCCGACGATTTTGTCGCGTTTCGATATGATCTATATTGTCAAGGATACGCATGATGTTAATAAGGATTCGGTTAGTAGAAGAGGCTCTTGGCTGGAACATGTCTGAAAATCGGTGAAAAATCCCAGAAAATGAACATTTTTGACCCTATTTTTCAGCAATTTTTTCCCAAATTTCCTTAAAATTCTACTTGAAATTTCCAGCTAATTTAGGAAATTCCTCTAAAAAATCAGACAATTGGGTCCTAAAACTTCAAAATTTAGCATTTTCTGACACAAAAGTTCGGCTAATTTCAGAAGTTTCAGCCTCATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGAGCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAAATCGCTGAAAATTGGGTCCAAAAATCCCAGAAAATGAACGTTTTTGGCCCCAAGTTTCAGCAATTTTTCTGCTTAAAAATTGCTTAAAATCAGG</canonical>
            <polymorphic>TGGGATGAGAGCAGAGGCGATGAGAATATCGATTTCATGCCGACGATTTTGTCGCGTTTCGATATGATCTATATTGTCAAGGATACGCATGATGTTAATAAGGATTCGGTTAGTAGAAGAGGCTCTTGGCTGGAACATGTCTGAAAATCGGTGAAAAATCCCAGAAAATGAACATTTTTGACCCTATTTTTCAGCAATTTTTTCCCAAATTTCCTTAAAATTCTACTTGAAATTTCCAGCTAATTTAGGAAATTCCTCTAAAAAATCAGACAATTGGGTCCTAAAACTTCAAAATTTAGCATTTTCTGACACAAAAGTTCGGCTAATTTCAGAAGTTTCAGCCTCATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTTWAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGAGCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAAATCGCTGAAAATTGGGTCCAAAAATCCCAGAAAATGAACGTTTTTGGCCCCAAGTTTCAGCAATTTTTCTGCTTAAAAATTGCTTAAAATCAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 303 198</canonical_bands>
                <polymorphic_bands>802 198</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>283 187 178 120 95 68 48 11 10</canonical_bands>
                <polymorphic_bands>351 187 178 120 95 48 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAGAAGTTTCAGCCTCAT</pcr_primer_p1>
		<pcr_primer_p2>GAAATATTTTAATGGAATTTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCAGAAGTTTCAGCCTCATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTC</canonical_amplicon>
		<polymorphic_amplicon>TTCAGAAGTTTCAGCCTCATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTTWAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29952</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>556761</contig_pos>
        <strand>+</strand>
        <context>CTGAAATTGG[C/T]CCAWAATGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGG</left_flank>
        <right_flank>CCATAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGATGTTAATAAGGATTCGGTTAGTAGAAGAGGCTCTTGGCTGGAACATGTCTGAAAATCGGTGAAAAATCCCAGAAAATGAACATTTTTGACCCTATTTTTCAGCAATTTTTTCCCAAATTTCCTTAAAATTCTACTTGAAATTTCCAGCTAATTTAGGAAATTCCTCTAAAAAATCAGACAATTGGGTCCTAAAACTTCAAAATTTAGCATTTTCTGACACAAAAGTTCGGCTAATTTCAGAAGTTTCAGCCTCATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGAGCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAAATCGCTGAAAATTGGGTCCAAAAATCCCAGAAAATGAACGTTTTTGGCCCCAAGTTTCAGCAATTTTTCTGCTTAAAAATTGCTTAAAATCAGGGTCTCAAATCTAGAAAAGTGCTCTAAAACAGCTGAAAATTGCGCTAGAAACCTGAAAAATTGATCCGAAGATTTCAAAAATCGGAAA</canonical>
            <polymorphic>CATGATGTTAATAAGGATTCGGTTAGTAGAAGAGGCTCTTGGCTGGAACATGTCTGAAAATCGGTGAAAAATCCCAGAAAATGAACATTTTTGACCCTATTTTTCAGCAATTTTTTCCCAAATTTCCTTAAAATTCTACTTGAAATTTCCAGCTAATTTAGGAAATTCCTCTAAAAAATCAGACAATTGGGTCCTAAAACTTCAAAATTTAGCATTTTCTGACACAAAAGTTCGGCTAATTTCAGAAGTTTCAGCCTCATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGYCCATAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGAGCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAAATCGCTGAAAATTGGGTCCAAAAATCCCAGAAAATGAACGTTTTTGGCCCCAAGTTTCAGCAATTTTTCTGCTTAAAAATTGCTTAAAATCAGGGTCTCAAATCTAGAAAAGTGCTCTAAAACAGCTGAAAATTGCGCTAGAAACCTGAAAAATTGATCCGAAGATTTCAAAAATCGGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>499 251 134 116</canonical_bands>
                <polymorphic_bands>750 134 116</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>245 167 110 97 83 78 56 45 39 35 19 19 7</canonical_bands>
                <polymorphic_bands>290 167 110 97 83 78 56 39 35 19 19 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATGCTGAAAATAGGGTTC</pcr_primer_p1>
		<pcr_primer_p2>ATCTGACTGAATTTCCCTCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGAT</canonical_amplicon>
		<polymorphic_amplicon>AAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGYCCATAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29953</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>556765</contig_pos>
        <strand>+</strand>
        <context>AATTGGYCCA[A/T]AATGTTCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCA</left_flank>
        <right_flank>AATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTTAATAAGGATTCGGTTAGTAGAAGAGGCTCTTGGCTGGAACATGTCTGAAAATCGGTGAAAAATCCCAGAAAATGAACATTTTTGACCCTATTTTTCAGCAATTTTTTCCCAAATTTCCTTAAAATTCTACTTGAAATTTCCAGCTAATTTAGGAAATTCCTCTAAAAAATCAGACAATTGGGTCCTAAAACTTCAAAATTTAGCATTTTCTGACACAAAAGTTCGGCTAATTTCAGAAGTTTCAGCCTCATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGAGCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAAATCGCTGAAAATTGGGTCCAAAAATCCCAGAAAATGAACGTTTTTGGCCCCAAGTTTCAGCAATTTTTCTGCTTAAAAATTGCTTAAAATCAGGGTCTCAAATCTAGAAAAGTGCTCTAAAACAGCTGAAAATTGCGCTAGAAACCTGAAAAATTGATCCGAAGATTTCAAAAATCGGAAATTTG</canonical>
            <polymorphic>ATGTTAATAAGGATTCGGTTAGTAGAAGAGGCTCTTGGCTGGAACATGTCTGAAAATCGGTGAAAAATCCCAGAAAATGAACATTTTTGACCCTATTTTTCAGCAATTTTTTCCCAAATTTCCTTAAAATTCTACTTGAAATTTCCAGCTAATTTAGGAAATTCCTCTAAAAAATCAGACAATTGGGTCCTAAAACTTCAAAATTTAGCATTTTCTGACACAAAAGTTCGGCTAATTTCAGAAGTTTCAGCCTCATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCAWAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGAGCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAAATCGCTGAAAATTGGGTCCAAAAATCCCAGAAAATGAACGTTTTTGGCCCCAAGTTTCAGCAATTTTTCTGCTTAAAAATTGCTTAAAATCAGGGTCTCAAATCTAGAAAAGTGCTCTAAAACAGCTGAAAATTGCGCTAGAAACCTGAAAAATTGATCCGAAGATTTCAAAAATCGGAAATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATGCTGAAAATAGGGTTC</pcr_primer_p1>
		<pcr_primer_p2>ATCTGACTGAATTTCCCTCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGAT</canonical_amplicon>
		<polymorphic_amplicon>AAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCAWAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29954</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>556783</contig_pos>
        <strand>+</strand>
        <context>AAAAAATCGC[C/T]GAAATCCCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGC</left_flank>
        <right_flank>GAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGTAGAAGAGGCTCTTGGCTGGAACATGTCTGAAAATCGGTGAAAAATCCCAGAAAATGAACATTTTTGACCCTATTTTTCAGCAATTTTTTCCCAAATTTCCTTAAAATTCTACTTGAAATTTCCAGCTAATTTAGGAAATTCCTCTAAAAAATCAGACAATTGGGTCCTAAAACTTCAAAATTTAGCATTTTCTGACACAAAAGTTCGGCTAATTTCAGAAGTTTCAGCCTCATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGAGCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAAATCGCTGAAAATTGGGTCCAAAAATCCCAGAAAATGAACGTTTTTGGCCCCAAGTTTCAGCAATTTTTCTGCTTAAAAATTGCTTAAAATCAGGGTCTCAAATCTAGAAAAGTGCTCTAAAACAGCTGAAAATTGCGCTAGAAACCTGAAAAATTGATCCGAAGATTTCAAAAATCGGAAATTTGCAGACCCTCGCGAAGCAC</canonical>
            <polymorphic>TTAGTAGAAGAGGCTCTTGGCTGGAACATGTCTGAAAATCGGTGAAAAATCCCAGAAAATGAACATTTTTGACCCTATTTTTCAGCAATTTTTTCCCAAATTTCCTTAAAATTCTACTTGAAATTTCCAGCTAATTTAGGAAATTCCTCTAAAAAATCAGACAATTGGGTCCTAAAACTTCAAAATTTAGCATTTTCTGACACAAAAGTTCGGCTAATTTCAGAAGTTTCAGCCTCATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCYGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGAGCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAAATCGCTGAAAATTGGGTCCAAAAATCCCAGAAAATGAACGTTTTTGGCCCCAAGTTTCAGCAATTTTTCTGCTTAAAAATTGCTTAAAATCAGGGTCTCAAATCTAGAAAAGTGCTCTAAAACAGCTGAAAATTGCGCTAGAAACCTGAAAAATTGATCCGAAGATTTCAAAAATCGGAAATTTGCAGACCCTCGCGAAGCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATGCTGAAAATAGGGTTC</pcr_primer_p1>
		<pcr_primer_p2>ATCTGACTGAATTTCCCTCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGAT</canonical_amplicon>
		<polymorphic_amplicon>AAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCYGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29955</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>556796</contig_pos>
        <strand>+</strand>
        <context>AATCCCTCTG[A/C]AATTTCCAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCTGAAATCCCTCTG</left_flank>
        <right_flank>AATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTTGGCTGGAACATGTCTGAAAATCGGTGAAAAATCCCAGAAAATGAACATTTTTGACCCTATTTTTCAGCAATTTTTTCCCAAATTTCCTTAAAATTCTACTTGAAATTTCCAGCTAATTTAGGAAATTCCTCTAAAAAATCAGACAATTGGGTCCTAAAACTTCAAAATTTAGCATTTTCTGACACAAAAGTTCGGCTAATTTCAGAAGTTTCAGCCTCATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGAGCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAAATCGCTGAAAATTGGGTCCAAAAATCCCAGAAAATGAACGTTTTTGGCCCCAAGTTTCAGCAATTTTTCTGCTTAAAAATTGCTTAAAATCAGGGTCTCAAATCTAGAAAAGTGCTCTAAAACAGCTGAAAATTGCGCTAGAAACCTGAAAAATTGATCCGAAGATTTCAAAAATCGGAAATTTGCAGACCCTCGCGAAGCACGTCATCGAAGTGC</canonical>
            <polymorphic>CTCTTGGCTGGAACATGTCTGAAAATCGGTGAAAAATCCCAGAAAATGAACATTTTTGACCCTATTTTTCAGCAATTTTTTCCCAAATTTCCTTAAAATTCTACTTGAAATTTCCAGCTAATTTAGGAAATTCCTCTAAAAAATCAGACAATTGGGTCCTAAAACTTCAAAATTTAGCATTTTCTGACACAAAAGTTCGGCTAATTTCAGAAGTTTCAGCCTCATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCTGAAATCCCTCTGMAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGAGCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAAATCGCTGAAAATTGGGTCCAAAAATCCCAGAAAATGAACGTTTTTGGCCCCAAGTTTCAGCAATTTTTCTGCTTAAAAATTGCTTAAAATCAGGGTCTCAAATCTAGAAAAGTGCTCTAAAACAGCTGAAAATTGCGCTAGAAACCTGAAAAATTGATCCGAAGATTTCAAAAATCGGAAATTTGCAGACCCTCGCGAAGCACGTCATCGAAGTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>499 470 31</canonical_bands>
                <polymorphic_bands>969 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATGCTGAAAATAGGGTTC</pcr_primer_p1>
		<pcr_primer_p2>ATCTGACTGAATTTCCCTCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGAT</canonical_amplicon>
		<polymorphic_amplicon>AAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCTGAAATCCCTCTGMAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29956</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>556834</contig_pos>
        <strand>+</strand>
        <context>CTAAAAATCT[A/G]AAAATTGGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCT</left_flank>
        <right_flank>AAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGAAAATGAACATTTTTGACCCTATTTTTCAGCAATTTTTTCCCAAATTTCCTTAAAATTCTACTTGAAATTTCCAGCTAATTTAGGAAATTCCTCTAAAAAATCAGACAATTGGGTCCTAAAACTTCAAAATTTAGCATTTTCTGACACAAAAGTTCGGCTAATTTCAGAAGTTTCAGCCTCATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGAGCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAAATCGCTGAAAATTGGGTCCAAAAATCCCAGAAAATGAACGTTTTTGGCCCCAAGTTTCAGCAATTTTTCTGCTTAAAAATTGCTTAAAATCAGGGTCTCAAATCTAGAAAAGTGCTCTAAAACAGCTGAAAATTGCGCTAGAAACCTGAAAAATTGATCCGAAGATTTCAAAAATCGGAAATTTGCAGACCCTCGCGAAGCACGTCATCGAAGTGCACGTCAACGCCTCTGCTGCCAAGGAACGCGACGATGCA</canonical>
            <polymorphic>CCAGAAAATGAACATTTTTGACCCTATTTTTCAGCAATTTTTTCCCAAATTTCCTTAAAATTCTACTTGAAATTTCCAGCTAATTTAGGAAATTCCTCTAAAAAATCAGACAATTGGGTCCTAAAACTTCAAAATTTAGCATTTTCTGACACAAAAGTTCGGCTAATTTCAGAAGTTTCAGCCTCATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTRAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGAGCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAAATCGCTGAAAATTGGGTCCAAAAATCCCAGAAAATGAACGTTTTTGGCCCCAAGTTTCAGCAATTTTTCTGCTTAAAAATTGCTTAAAATCAGGGTCTCAAATCTAGAAAAGTGCTCTAAAACAGCTGAAAATTGCGCTAGAAACCTGAAAAATTGATCCGAAGATTTCAAAAATCGGAAATTTGCAGACCCTCGCGAAGCACGTCATCGAAGTGCACGTCAACGCCTCTGCTGCCAAGGAACGCGACGATGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>194 139 108 90 86 81 77 39 35 32 30 26 24 22 17</canonical_bands>
                <polymorphic_bands>194 171 139 108 86 77 39 35 32 30 26 24 22 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATGCTGAAAATAGGGTTC</pcr_primer_p1>
		<pcr_primer_p2>ATCTGACTGAATTTCCCTCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGAT</canonical_amplicon>
		<polymorphic_amplicon>AAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTRAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29957</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>556936</contig_pos>
        <strand>+</strand>
        <context>TTTAATAAAA[A/T]TTCCCGAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGATTTAATAAAA</left_flank>
        <right_flank>TTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATCAGACAATTGGGTCCTAAAACTTCAAAATTTAGCATTTTCTGACACAAAAGTTCGGCTAATTTCAGAAGTTTCAGCCTCATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGAGCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAAATCGCTGAAAATTGGGTCCAAAAATCCCAGAAAATGAACGTTTTTGGCCCCAAGTTTCAGCAATTTTTCTGCTTAAAAATTGCTTAAAATCAGGGTCTCAAATCTAGAAAAGTGCTCTAAAACAGCTGAAAATTGCGCTAGAAACCTGAAAAATTGATCCGAAGATTTCAAAAATCGGAAATTTGCAGACCCTCGCGAAGCACGTCATCGAAGTGCACGTCAACGCCTCTGCTGCCAAGGAACGCGACGATGCAGGAGTTCCAAAAGCGCCAACCACCGATGCCGATGGAGGAGTGATGCAGATGTACGATACGGATGGATTCCTAACAATCGAATTCCTGAAGAAGTTCGTCACC</canonical>
            <polymorphic>AAATCAGACAATTGGGTCCTAAAACTTCAAAATTTAGCATTTTCTGACACAAAAGTTCGGCTAATTTCAGAAGTTTCAGCCTCATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGATTTAATAAAAWTTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGAGCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAAATCGCTGAAAATTGGGTCCAAAAATCCCAGAAAATGAACGTTTTTGGCCCCAAGTTTCAGCAATTTTTCTGCTTAAAAATTGCTTAAAATCAGGGTCTCAAATCTAGAAAAGTGCTCTAAAACAGCTGAAAATTGCGCTAGAAACCTGAAAAATTGATCCGAAGATTTCAAAAATCGGAAATTTGCAGACCCTCGCGAAGCACGTCATCGAAGTGCACGTCAACGCCTCTGCTGCCAAGGAACGCGACGATGCAGGAGTTCCAAAAGCGCCAACCACCGATGCCGATGGAGGAGTGATGCAGATGTACGATACGGATGGATTCCTAACAATCGAATTCCTGAAGAAGTTCGTCACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>211 154 88 84 76 64 63 44 34 33 30 30 26 23 21 19</canonical_bands>
                <polymorphic_bands>211 154 109 84 76 64 63 44 34 33 30 30 26 23 19</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>154 76 64 53 52 44 43 42 34 32 31 28 25 23 22 21 21 21 21 20 20 20 19 17 16 15 13 13 11 11 9 9</canonical_bands>
                <polymorphic_bands>154 76 64 64 53 52 44 42 34 32 31 28 25 23 22 21 21 21 20 20 20 19 17 16 15 13 13 11 11 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGACTAATTTCTGGTCCAAAT</pcr_primer_p1>
		<pcr_primer_p2>AATTTTCAGCGATTTTAGAGC</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>AATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGAGCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAAATCGCTGAAAATT</canonical_amplicon>
		<polymorphic_amplicon>AATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGATTTAATAAAAWTTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGAGCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAAATCGCTGAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29958</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>556949</contig_pos>
        <strand>+</strand>
        <context>CCCGAACAAA[C/G]TTGTCTGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTTTCTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAA</left_flank>
        <right_flank>TTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGTCCTAAAACTTCAAAATTTAGCATTTTCTGACACAAAAGTTCGGCTAATTTCAGAAGTTTCAGCCTCATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGAGCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAAATCGCTGAAAATTGGGTCCAAAAATCCCAGAAAATGAACGTTTTTGGCCCCAAGTTTCAGCAATTTTTCTGCTTAAAAATTGCTTAAAATCAGGGTCTCAAATCTAGAAAAGTGCTCTAAAACAGCTGAAAATTGCGCTAGAAACCTGAAAAATTGATCCGAAGATTTCAAAAATCGGAAATTTGCAGACCCTCGCGAAGCACGTCATCGAAGTGCACGTCAACGCCTCTGCTGCCAAGGAACGCGACGATGCAGGAGTTCCAAAAGCGCCAACCACCGATGCCGATGGAGGAGTGATGCAGATGTACGATACGGATGGATTCCTAACAATCGAATTCCTGAAGAAGTTCGTCACCTATGCTCGTATGA</canonical>
            <polymorphic>GGGTCCTAAAACTTCAAAATTTAGCATTTTCTGACACAAAAGTTCGGCTAATTTCAGAAGTTTCAGCCTCATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAASTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGAGCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAAATCGCTGAAAATTGGGTCCAAAAATCCCAGAAAATGAACGTTTTTGGCCCCAAGTTTCAGCAATTTTTCTGCTTAAAAATTGCTTAAAATCAGGGTCTCAAATCTAGAAAAGTGCTCTAAAACAGCTGAAAATTGCGCTAGAAACCTGAAAAATTGATCCGAAGATTTCAAAAATCGGAAATTTGCAGACCCTCGCGAAGCACGTCATCGAAGTGCACGTCAACGCCTCTGCTGCCAAGGAACGCGACGATGCAGGAGTTCCAAAAGCGCCAACCACCGATGCCGATGGAGGAGTGATGCAGATGTACGATACGGATGGATTCCTAACAATCGAATTCCTGAAGAAGTTCGTCACCTATGCTCGTATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTTCTTAGAGGGAAATTCA</pcr_primer_p1>
		<pcr_primer_p2>CAGAAAAATTGCTGAAACTTG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CATTTTCTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGAGCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAAATCGCTGAAAATTGGGTCCAAAAATCCCAGAAAATGAACGTTTTTGGCCCCAAGTTTCAGCAATTTTTCTG</canonical_amplicon>
		<polymorphic_amplicon>CATTTTCTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAASTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGAGCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAAATCGCTGAAAATTGGGTCCAAAAATCCCAGAAAATGAACGTTTTTGGCCCCAAGTTTCAGCAATTTTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29959</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>556975</contig_pos>
        <strand>+</strand>
        <context>GAAAATAGCT[C/T]TAAATTATCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTAATAAAAATTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCT</left_flank>
        <right_flank>TAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCTGACACAAAAGTTCGGCTAATTTCAGAAGTTTCAGCCTCATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGAGCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAAATCGCTGAAAATTGGGTCCAAAAATCCCAGAAAATGAACGTTTTTGGCCCCAAGTTTCAGCAATTTTTCTGCTTAAAAATTGCTTAAAATCAGGGTCTCAAATCTAGAAAAGTGCTCTAAAACAGCTGAAAATTGCGCTAGAAACCTGAAAAATTGATCCGAAGATTTCAAAAATCGGAAATTTGCAGACCCTCGCGAAGCACGTCATCGAAGTGCACGTCAACGCCTCTGCTGCCAAGGAACGCGACGATGCAGGAGTTCCAAAAGCGCCAACCACCGATGCCGATGGAGGAGTGATGCAGATGTACGATACGGATGGATTCCTAACAATCGAATTCCTGAAGAAGTTCGTCACCTATGCTCGTATGACATGCGGACCACGTCTCACCCCACAG</canonical>
            <polymorphic>TTTTCTGACACAAAAGTTCGGCTAATTTCAGAAGTTTCAGCCTCATTCCTCAGAAATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTYTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGAGCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAAATCGCTGAAAATTGGGTCCAAAAATCCCAGAAAATGAACGTTTTTGGCCCCAAGTTTCAGCAATTTTTCTGCTTAAAAATTGCTTAAAATCAGGGTCTCAAATCTAGAAAAGTGCTCTAAAACAGCTGAAAATTGCGCTAGAAACCTGAAAAATTGATCCGAAGATTTCAAAAATCGGAAATTTGCAGACCCTCGCGAAGCACGTCATCGAAGTGCACGTCAACGCCTCTGCTGCCAAGGAACGCGACGATGCAGGAGTTCCAAAAGCGCCAACCACCGATGCCGATGGAGGAGTGATGCAGATGTACGATACGGATGGATTCCTAACAATCGAATTCCTGAAGAAGTTCGTCACCTATGCTCGTATGACATGCGGACCACGTCTCACCCCACAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 303 198</canonical_bands>
                <polymorphic_bands>802 198</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>311 197 187 178 68 48 11</canonical_bands>
                <polymorphic_bands>311 226 197 187 68 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTAGAGGGAAATTCAGTCAGAT</pcr_primer_p1>
		<pcr_primer_p2>CAGAAAAATTGCTGAAACTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGAGCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAAATCGCTGAAAATTGGGTCCAAAAATCCCAGAAAATGAACGTTTTTGGCCCCAAGTTTCAGCAATTTTTCTG</canonical_amplicon>
		<polymorphic_amplicon>CTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTYTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGAGCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAAATCGCTGAAAATTGGGTCCAAAAATCCCAGAAAATGAACGTTTTTGGCCCCAAGTTTCAGCAATTTTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29960</snp_id>
        <super_contig>c005001230.Contig2</super_contig>
        <contig_pos>557030</contig_pos>
        <strand>+</strand>
        <context>AGAAATTTGA[A/G]CCTAAATAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGA</left_flank>
        <right_flank>CCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGAGCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAAATCGCTGAAAATTGGGTCCAAAAATCCCAGAAAATGAACGTTTTTGGCCCCAAGTTTCAGCAATTTTTCTGCTTAAAAATTGCTTAAAATCAGGGTCTCAAATCTAGAAAAGTGCTCTAAAACAGCTGAAAATTGCGCTAGAAACCTGAAAAATTGATCCGAAGATTTCAAAAATCGGAAATTTGCAGACCCTCGCGAAGCACGTCATCGAAGTGCACGTCAACGCCTCTGCTGCCAAGGAACGCGACGATGCAGGAGTTCCAAAAGCGCCAACCACCGATGCCGATGGAGGAGTGATGCAGATGTACGATACGGATGGATTCCTAACAATCGAATTCCTGAAGAAGTTCGTCACCTATGCTCGTATGACATGCGGACCACGTCTCACCCCACAGGCATCGGAGAAGCTCGTCAATCACTACGTCAAGATGAGAAACCCGGTCGTCAATG</canonical>
            <polymorphic>ATTTGTGATTTCAAACAGAATTTCCAGAAGTTTTCATCGATTTTCAGTCACTTTTTCTCCCAAATTCGACTGAAAATCGGTGAAAAATAGGTCCTAAAATGCTGAATATTGCTCCGGAAACATGAAAAATCGATCTGAAATTTAAAAAAAATGCTGAAAATAGGGTTCAAAGATCCAAGGAAATGATCATTTTTGACTCAAAAATTCCATTAAAATATTTCTGAAATTGGCCCATAATGTTCAAAAAATCGCTGAAATCCCTCTGCAATTTCCAGCTAATCTAAAAAATTCCTCTAAAAATCTGAAAATTGGGTCCCAAAATTCTCTAAAATGACTAATTTCTGGTCCAAATTTCAAAGCAAATGATCATTTTCTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGARCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAAATCGCTGAAAATTGGGTCCAAAAATCCCAGAAAATGAACGTTTTTGGCCCCAAGTTTCAGCAATTTTTCTGCTTAAAAATTGCTTAAAATCAGGGTCTCAAATCTAGAAAAGTGCTCTAAAACAGCTGAAAATTGCGCTAGAAACCTGAAAAATTGATCCGAAGATTTCAAAAATCGGAAATTTGCAGACCCTCGCGAAGCACGTCATCGAAGTGCACGTCAACGCCTCTGCTGCCAAGGAACGCGACGATGCAGGAGTTCCAAAAGCGCCAACCACCGATGCCGATGGAGGAGTGATGCAGATGTACGATACGGATGGATTCCTAACAATCGAATTCCTGAAGAAGTTCGTCACCTATGCTCGTATGACATGCGGACCACGTCTCACCCCACAGGCATCGGAGAAGCTCGTCAATCACTACGTCAAGATGAGAAACCCGGTCGTCAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>282 230 167 97 78 45 43 39 19</canonical_bands>
                <polymorphic_bands>282 230 167 116 78 45 43 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTAGAGGGAAATTCAGTCAGAT</pcr_primer_p1>
		<pcr_primer_p2>CAGAAAAATTGCTGAAACTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGAGCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAAATCGCTGAAAATTGGGTCCAAAAATCCCAGAAAATGAACGTTTTTGGCCCCAAGTTTCAGCAATTTTTCTG</canonical_amplicon>
		<polymorphic_amplicon>CTTAGAGGGAAATTCAGTCAGATTTAATAAAAATTCCCGAACAAAGTTGTCTGAAAATCTAGAAAATAGCTTTAAATTATCTGAAAATTGATTCGAGAGCATTTTAGGCCAATTTCAGAAATTTGARCCTAAATAATTCCTCTGAAATTTCCTGCTAATCCAGGAAATTGCTCTAAAATCGCTGAAAATTGGGTCCAAAAATCCCAGAAAATGAACGTTTTTGGCCCCAAGTTTCAGCAATTTTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29968</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>46384</contig_pos>
        <strand>+</strand>
        <context>TATGAATTTC[C/T]GATTTACGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGGAAATCCCAATTTTTGAATTTCCAAATTTCTTAATTATGAATTTC</left_flank>
        <right_flank>GATTTACGAATTTCTGGATTTCTGAACTTTTCAAAATTTCGATAAAACCC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAATTGTCTCGAAAGGAATTGAAATTTCTAAAACAAAATTTTTAAGTTTTTGAGATTTTTTGTAGTAAAAAATGTTACCTGTAAAAGTTCCCAACTCGCCGAAGGCTCCGCCCACATTTTTTGAAATTTCTGGTCTTGGAATTCGTCGAAATGGATGTTCTTCTCCGTACAGATATATCAGAAAACCTGGAACAAATTTAATTTTCTTTTGAAAATTACAAATGCGATCTGTTGAAATTCTAGAACTCACTGATTTCATAGGTGACTGAACGTGTACGTTCAGTGATTGAAATACTGTCATCTGGAGTGACAGATCCATTGGCATACAACGCCTCCAAATCTTCCAGACTAATGGGTCTGGAACTTTTTGAATTTCAGGTTTATCAAGATTTTTCTGAAATTTCAAAAATCTGAAATCCAAAAGTTCGATCATTTCGTATTCTAGAGTTTTGGAAATCCCAATTTTTGAATTTCCAAATTTCTTAATTATGAATTTCCGATTTACGAATTTCTGGATTTCTGAACTTTTCAAAATTTCGATAAAACCCTCAAACCAACTTATTCTGAAACTGAAAAAGCGTATTCTTTGTTGTCATTCGTTGAAGATGGAAATTCTGAAAAAAAAGGGAAAATTATATATTTGAAAACCAAATTTTTGGGTGAAAAACAATAAAAAATTTTGACATGGCCTGATAACAAAATGTTCGCATAGATAACAGTAGAAATTATACAAAAAATTACAGTTGTCAAAAAATGTAAACATTGAATGTTCGAATTGCTGAATTTTTGAATTTTTTAAACAAAATTTCAAAAAATTCCGTATTTCCAGAATTTTCTAGAATTTCAAAAAACTCCACTTTTTCCATAAATTCTTCTAAAAATCGATTTTTTTTTTCAATTTTAAATACAAAACAATCGAAATTTTTCGTTTTTTCTCTAATTTTCTTGATTTTGGTTTGAAACTACAGTAACCTGAAATTTTAATTTTTGATAAGAAA</canonical>
            <polymorphic>TGGAATTGTCTCGAAAGGAATTGAAATTTCTAAAACAAAATTTTTAAGTTTTTGAGATTTTTTGTAGTAAAAAATGTTACCTGTAAAAGTTCCCAACTCGCCGAAGGCTCCGCCCACATTTTTTGAAATTTCTGGTCTTGGAATTCGTCGAAATGGATGTTCTTCTCCGTACAGATATATCAGAAAACCTGGAACAAATTTAATTTTCTTTTGAAAATTACAAATGCGATCTGTTGAAATTCTAGAACTCACTGATTTCATAGGTGACTGAACGTGTACGTTCAGTGATTGAAATACTGTCATCTGGAGTGACAGATCCATTGGCATACAACGCCTCCAAATCTTCCAGACTAATGGGTCTGGAACTTTTTGAATTTCAGGTTTATCAAGATTTTTCTGAAATTTCAAAAATCTGAAATCCAAAAGTTCGATCATTTCGTATTCTAGAGTTTTGGAAATCCCAATTTTTGAATTTCCAAATTTCTTAATTATGAATTTCYGATTTACGAATTTCTGGATTTCTGAACTTTTCAAAATTTCGATAAAACCCTCAAACCAACTTATTCTGAAACTGAAAAAGCGTATTCTTTGTTGTCATTCGTTGAAGATGGAAATTCTGAAAAAAAAGGGAAAATTATATATTTGAAAACCAAATTTTTGGGTGAAAAACAATAAAAAATTTTGACATGGCCTGATAACAAAATGTTCGCATAGATAACAGTAGAAATTATACAAAAAATTACAGTTGTCAAAAAATGTAAACATTGAATGTTCGAATTGCTGAATTTTTGAATTTTTTAAACAAAATTTCAAAAAATTCCGTATTTCCAGAATTTTCTAGAATTTCAAAAAACTCCACTTTTTCCATAAATTCTTCTAAAAATCGATTTTTTTTTTCAATTTTAAATACAAAACAATCGAAATTTTTCGTTTTTTCTCTAATTTTCTTGATTTTGGTTTGAAACTACAGTAACCTGAAATTTTAATTTTTGATAAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCAAATCTTCCAGACTAATG</pcr_primer_p1>
		<pcr_primer_p2>TACGCTTTTTCAGTTTCAGAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCCAAATCTTCCAGACTAATGGGTCTGGAACTTTTTGAATTTCAGGTTTATCAAGATTTTTCTGAAATTTCAAAAATCTGAAATCCAAAAGTTCGATCATTTCGTATTCTAGAGTTTTGGAAATCCCAATTTTTGAATTTCCAAATTTCTTAATTATGAATTTCCGATTTACGAATTTCTGGATTTCTGAACTTTTCAAAATTTCGATAAAACCCTCAAACCAACTTATTCTGAAACTGAAAAAGCGTA</canonical_amplicon>
		<polymorphic_amplicon>CTCCAAATCTTCCAGACTAATGGGTCTGGAACTTTTTGAATTTCAGGTTTATCAAGATTTTTCTGAAATTTCAAAAATCTGAAATCCAAAAGTTCGATCATTTCGTATTCTAGAGTTTTGGAAATCCCAATTTTTGAATTTCCAAATTTCTTAATTATGAATTTCYGATTTACGAATTTCTGGATTTCTGAACTTTTCAAAATTTCGATAAAACCCTCAAACCAACTTATTCTGAAACTGAAAAAGCGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29969</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>46401</contig_pos>
        <strand>+</strand>
        <context>CGAATTTCTG[A/G]ATTTCTGAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGAATTTCCAAATTTCTTAATTATGAATTTCCGATTTACGAATTTCTG</left_flank>
        <right_flank>ATTTCTGAACTTTTCAAAATTTCGATAAAACCCTCAAACCAACTTATTCT</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTGAAATTTCTAAAACAAAATTTTTAAGTTTTTGAGATTTTTTGTAGTAAAAAATGTTACCTGTAAAAGTTCCCAACTCGCCGAAGGCTCCGCCCACATTTTTTGAAATTTCTGGTCTTGGAATTCGTCGAAATGGATGTTCTTCTCCGTACAGATATATCAGAAAACCTGGAACAAATTTAATTTTCTTTTGAAAATTACAAATGCGATCTGTTGAAATTCTAGAACTCACTGATTTCATAGGTGACTGAACGTGTACGTTCAGTGATTGAAATACTGTCATCTGGAGTGACAGATCCATTGGCATACAACGCCTCCAAATCTTCCAGACTAATGGGTCTGGAACTTTTTGAATTTCAGGTTTATCAAGATTTTTCTGAAATTTCAAAAATCTGAAATCCAAAAGTTCGATCATTTCGTATTCTAGAGTTTTGGAAATCCCAATTTTTGAATTTCCAAATTTCTTAATTATGAATTTCCGATTTACGAATTTCTGGATTTCTGAACTTTTCAAAATTTCGATAAAACCCTCAAACCAACTTATTCTGAAACTGAAAAAGCGTATTCTTTGTTGTCATTCGTTGAAGATGGAAATTCTGAAAAAAAAGGGAAAATTATATATTTGAAAACCAAATTTTTGGGTGAAAAACAATAAAAAATTTTGACATGGCCTGATAACAAAATGTTCGCATAGATAACAGTAGAAATTATACAAAAAATTACAGTTGTCAAAAAATGTAAACATTGAATGTTCGAATTGCTGAATTTTTGAATTTTTTAAACAAAATTTCAAAAAATTCCGTATTTCCAGAATTTTCTAGAATTTCAAAAAACTCCACTTTTTCCATAAATTCTTCTAAAAATCGATTTTTTTTTTCAATTTTAAATACAAAACAATCGAAATTTTTCGTTTTTTCTCTAATTTTCTTGATTTTGGTTTGAAACTACAGTAACCTGAAATTTTAATTTTTGATAAGAAAAAAAAATAAAAAATCTT</canonical>
            <polymorphic>GAATTGAAATTTCTAAAACAAAATTTTTAAGTTTTTGAGATTTTTTGTAGTAAAAAATGTTACCTGTAAAAGTTCCCAACTCGCCGAAGGCTCCGCCCACATTTTTTGAAATTTCTGGTCTTGGAATTCGTCGAAATGGATGTTCTTCTCCGTACAGATATATCAGAAAACCTGGAACAAATTTAATTTTCTTTTGAAAATTACAAATGCGATCTGTTGAAATTCTAGAACTCACTGATTTCATAGGTGACTGAACGTGTACGTTCAGTGATTGAAATACTGTCATCTGGAGTGACAGATCCATTGGCATACAACGCCTCCAAATCTTCCAGACTAATGGGTCTGGAACTTTTTGAATTTCAGGTTTATCAAGATTTTTCTGAAATTTCAAAAATCTGAAATCCAAAAGTTCGATCATTTCGTATTCTAGAGTTTTGGAAATCCCAATTTTTGAATTTCCAAATTTCTTAATTATGAATTTCCGATTTACGAATTTCTGRATTTCTGAACTTTTCAAAATTTCGATAAAACCCTCAAACCAACTTATTCTGAAACTGAAAAAGCGTATTCTTTGTTGTCATTCGTTGAAGATGGAAATTCTGAAAAAAAAGGGAAAATTATATATTTGAAAACCAAATTTTTGGGTGAAAAACAATAAAAAATTTTGACATGGCCTGATAACAAAATGTTCGCATAGATAACAGTAGAAATTATACAAAAAATTACAGTTGTCAAAAAATGTAAACATTGAATGTTCGAATTGCTGAATTTTTGAATTTTTTAAACAAAATTTCAAAAAATTCCGTATTTCCAGAATTTTCTAGAATTTCAAAAAACTCCACTTTTTCCATAAATTCTTCTAAAAATCGATTTTTTTTTTCAATTTTAAATACAAAACAATCGAAATTTTTCGTTTTTTCTCTAATTTTCTTGATTTTGGTTTGAAACTACAGTAACCTGAAATTTTAATTTTTGATAAGAAAAAAAAATAAAAAATCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>314 225 109 70 70 62 57 42 27 14 10</canonical_bands>
                <polymorphic_bands>384 225 109 70 62 57 42 27 14 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCCAAATCTTCCAGACTAATG</pcr_primer_p1>
		<pcr_primer_p2>TACGCTTTTTCAGTTTCAGAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCCAAATCTTCCAGACTAATGGGTCTGGAACTTTTTGAATTTCAGGTTTATCAAGATTTTTCTGAAATTTCAAAAATCTGAAATCCAAAAGTTCGATCATTTCGTATTCTAGAGTTTTGGAAATCCCAATTTTTGAATTTCCAAATTTCTTAATTATGAATTTCCGATTTACGAATTTCTGGATTTCTGAACTTTTCAAAATTTCGATAAAACCCTCAAACCAACTTATTCTGAAACTGAAAAAGCGTA</canonical_amplicon>
		<polymorphic_amplicon>CTCCAAATCTTCCAGACTAATGGGTCTGGAACTTTTTGAATTTCAGGTTTATCAAGATTTTTCTGAAATTTCAAAAATCTGAAATCCAAAAGTTCGATCATTTCGTATTCTAGAGTTTTGGAAATCCCAATTTTTGAATTTCCAAATTTCTTAATTATGAATTTCCGATTTACGAATTTCTGRATTTCTGAACTTTTCAAAATTTCGATAAAACCCTCAAACCAACTTATTCTGAAACTGAAAAAGCGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29970</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>46512</contig_pos>
        <strand></strand>
        <context>TGAAAAAAAA[G/A]GGAAAATTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAGCGTATTCTTTGTTGTCATTCGTTGAAGATGGAAATTCTGAAAAAAAA</left_flank>
        <right_flank>GGAAAATTATATATTTGAAAACCAAATTTTTGGGTGAAAAACAATAAAAA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTGGTCTTGGAATTCGTCGAAATGGATGTTCTTCTCCGTACAGATATATCAGAAAACCTGGAACAAATTTAATTTTCTTTTGAAAATTACAAATGCGATCTGTTGAAATTCTAGAACTCACTGATTTCATAGGTGACTGAACGTGTACGTTCAGTGATTGAAATACTGTCATCTGGAGTGACAGATCCATTGGCATACAACGCCTCCAAATCTTCCAGACTAATGGGTCTGGAACTTTTTGAATTTCAGGTTTATCAAGATTTTTCTGAAATTTCAAAAATCTGAAATCCAAAAGTTCGATCATTTCGTATTCTAGAGTTTTGGAAATCCCAATTTTTGAATTTCCAAATTTCTTAATTATGAATTTCCGATTTACGAATTTCTGGATTTCTGAACTTTTCAAAATTTCGATAAAACCCTCAAACCAACTTATTCTGAAACTGAAAAAGCGTATTCTTTGTTGTCATTCGTTGAAGATGGAAATTCTGAAAAAAAAGGGAAAATTATATATTTGAAAACCAAATTTTTGGGTGAAAAACAATAAAAAATTTTGACATGGCCTGATAACAAAATGTTCGCATAGATAACAGTAGAAATTATACAAAAAATTACAGTTGTCAAAAAATGTAAACATTGAATGTTCGAATTGCTGAATTTTTGAATTTTTTAAACAAAATTTCAAAAAATTCCGTATTTCCAGAATTTTCTAGAATTTCAAAAAACTCCACTTTTTCCATAAATTCTTCTAAAAATCGATTTTTTTTTTCAATTTTAAATACAAAACAATCGAAATTTTTCGTTTTTTCTCTAATTTTCTTGATTTTGGTTTGAAACTACAGTAACCTGAAATTTTAATTTTTGATAAGAAAAAAAAATAAAAAATCTTTTTAAAAGTAGCAATTTTCCTCCGAGAAAAATGGCCACACACAGTTGTTCTGTTCTCCTCTTTCCCTCATCCTCTCTTTCTCATTTTTGTAAAAAATAATTTTCAAAAAAT</canonical>
            <polymorphic>TTTCTGGTCTTGGAATTCGTCGAAATGGATGTTCTTCTCCGTACAGATATATCAGAAAACCTGGAACAAATTTAATTTTCTTTTGAAAATTACAAATGCGATCTGTTGAAATTCTAGAACTCACTGATTTCATAGGTGACTGAACGTGTACGTTCAGTGATTGAAATACTGTCATCTGGAGTGACAGATCCATTGGCATACAACGCCTCCAAATCTTCCAGACTAATGGGTCTGGAACTTTTTGAATTTCAGGTTTATCAAGATTTTTCTGAAATTTCAAAAATCTGAAATCCAAAAGTTCGATCATTTCGTATTCTAGAGTTTTGGAAATCCCAATTTTTGAATTTCCAAATTTCTTAATTATGAATTTCCGATTTACGAATTTCTGGATTTCTGAACTTTTCAAAATTTCGATAAAACCCTCAAACCAACTTATTCTGAAACTGAAAAAGCGTATTCTTTGTTGTCATTCGTTGAAGATGGAAATTCTGAAAAAAAARGGAAAATTATATATTTGAAAACCAAATTTTTGGGTGAAAAACAATAAAAAATTTTGACATGGCCTGATAACAAAATGTTCGCATAGATAACAGTAGAAATTATACAAAAAATTACAGTTGTCAAAAAATGTAAACATTGAATGTTCGAATTGCTGAATTTTTGAATTTTTTAAACAAAATTTCAAAAAATTCCGTATTTCCAGAATTTTCTAGAATTTCAAAAAACTCCACTTTTTCCATAAATTCTTCTAAAAATCGATTTTTTTTTTCAATTTTAAATACAAAACAATCGAAATTTTTCGTTTTTTCTCTAATTTTCTTGATTTTGGTTTGAAACTACAGTAACCTGAAATTTTAATTTTTGATAAGAAAAAAAAATAAAAAATCTTTTTAAAAGTAGCAATTTTCCTCCGAGAAAAATGGCCACACACAGTTGTTCTGTTCTCCTCTTTCCCTCATCCTCTCTTTCTCATTTTTGTAAAAAATAATTTTCAAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAAACCAACTTATTCTGAAAC</pcr_primer_p1>
		<pcr_primer_p2>AAATTCAAAAATTCAGCAATTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTCAAACCAACTTATTCTGAAACTGAAAAAGCGTATTCTTTGTTGTCATTCGTTGAAGATGGAAATTCTGAAAAAAAAGGGAAAATTATATATTTGAAAACCAAATTTTTGGGTGAAAAACAATAAAAAATTTTGACATGGCCTGATAACAAAATGTTCGCATAGATAACAGTAGAAATTATACAAAAAATTACAGTTGTCAAAAAATGTAAACATTGAATGTTCGAATTGCTGAATTTTTGAATTT</canonical_amplicon>
		<polymorphic_amplicon>CTCAAACCAACTTATTCTGAAACTGAAAAAGCGTATTCTTTGTTGTCATTCGTTGAAGATGGAAATTCTGAAAAAAAARGGAAAATTATATATTTGAAAACCAAATTTTTGGGTGAAAAACAATAAAAAATTTTGACATGGCCTGATAACAAAATGTTCGCATAGATAACAGTAGAAATTATACAAAAAATTACAGTTGTCAAAAAATGTAAACATTGAATGTTCGAATTGCTGAATTTTTGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29971</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>80123</contig_pos>
        <strand></strand>
        <context>taatcttaat[G/A]actacartaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAAT</left_flank>
        <right_flank>ACTACAATAATCCTGATAACTACAGTAATCTTAATAACTACAGTAATCCC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTATTACAGGTTTTGACGGTAACTGAATTTTTGAATTTCAATTTTTCTAATTTGAAATTTTCAGACGAACCACGAGTTCCATTACTTGCTCCAATGCCGAAAAATGAGAATACGGTTCCCAGTAAGTTAGAAAAATTCTAGAATTTCTTCTAAAATTTAAATTTAAAAATTGAAAATTTAAATTTCAGAAAAGCAATTCAACGAAATGCTTGACGAGTGTGCAAAAATGTTCCAAACACACAAAAAACGATTGTCTGCCGCCAAGAATGTTGTAAGTGAATGAGTCTACAGTAGTCCTGGAAAATACAGTAATCCTAATCAGTACAGTAATCCTAATAACTACAGTTATCCCAATAACTACAGTAAACCAATAACTACAGTAATCCCAATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCTTAATAACTACAGTAATCCCAATAACGACAGTAATCCTGATTACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCC</canonical>
            <polymorphic>TCTATTACAGGTTTTGACGGTAACTGAATTTTTGAATTTCAATTTTTCTAATTTGAAATTTTCAGACGAACCACGAGTTCCATTACTTGCTCCAATGCCGAAAAATGAGAATACGGTTCCCAGTAAGTTAGAAAAATTCTAGAATTTCTTCTAAAATTTAAATTTAAAAATTGAAAATTTAAATTTCAGAAAAGCAATTCAACGAAATGCTTGACGAGTGTGCAAAAATGTTCCAAACACACAAAAAACGATTGTCTGCCGCCAAGAATGTTGTAAGTGAATGAGTCTACAGTAGTCCTGGAAAATACAGTAATCCTAATCAGTACAGTAATCCTAATAACTACAGTTATCCCAATAACTACAGTAAACCAATAACTACAGTAATCCCAATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATRACTACAATAATCCTGATAACTACAGTAATCTTAATAACTACAGTAATCCCAATAACGACAGTAATCCTGATTACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATAACGACAGTAATGCTGAT</pcr_primer_p1>
		<pcr_primer_p2>GCTGAAAATATTGTTTTACGATTA</pcr_primer_p2>
		<pcr_amplicon_size>702</pcr_amplicon_size>
		<canonical_amplicon>CAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTAC</canonical_amplicon>
		<polymorphic_amplicon>CAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATRACTACAATAATCCTGATAACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29972</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>80130</contig_pos>
        <strand></strand>
        <context>aatractaca[A/G]taatccyrat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACA</left_flank>
        <right_flank>TAATCCTGATAACTACAGTAATCTTAATAACTACAGTAATCCCAATAACG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGGTTTTGACGGTAACTGAATTTTTGAATTTCAATTTTTCTAATTTGAAATTTTCAGACGAACCACGAGTTCCATTACTTGCTCCAATGCCGAAAAATGAGAATACGGTTCCCAGTAAGTTAGAAAAATTCTAGAATTTCTTCTAAAATTTAAATTTAAAAATTGAAAATTTAAATTTCAGAAAAGCAATTCAACGAAATGCTTGACGAGTGTGCAAAAATGTTCCAAACACACAAAAAACGATTGTCTGCCGCCAAGAATGTTGTAAGTGAATGAGTCTACAGTAGTCCTGGAAAATACAGTAATCCTAATCAGTACAGTAATCCTAATAACTACAGTTATCCCAATAACTACAGTAAACCAATAACTACAGTAATCCCAATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCTTAATAACTACAGTAATCCCAATAACGACAGTAATCCTGATTACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACG</canonical>
            <polymorphic>CAGGTTTTGACGGTAACTGAATTTTTGAATTTCAATTTTTCTAATTTGAAATTTTCAGACGAACCACGAGTTCCATTACTTGCTCCAATGCCGAAAAATGAGAATACGGTTCCCAGTAAGTTAGAAAAATTCTAGAATTTCTTCTAAAATTTAAATTTAAAAATTGAAAATTTAAATTTCAGAAAAGCAATTCAACGAAATGCTTGACGAGTGTGCAAAAATGTTCCAAACACACAAAAAACGATTGTCTGCCGCCAAGAATGTTGTAAGTGAATGAGTCTACAGTAGTCCTGGAAAATACAGTAATCCTAATCAGTACAGTAATCCTAATAACTACAGTTATCCCAATAACTACAGTAAACCAATAACTACAGTAATCCCAATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACARTAATCCTGATAACTACAGTAATCTTAATAACTACAGTAATCCCAATAACGACAGTAATCCTGATTACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATAACGACAGTAATGCTGAT</pcr_primer_p1>
		<pcr_primer_p2>GCTGAAAATATTGTTTTACGATTA</pcr_primer_p2>
		<pcr_amplicon_size>702</pcr_amplicon_size>
		<canonical_amplicon>CAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATC</canonical_amplicon>
		<polymorphic_amplicon>CAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACARTAATCCTGATAACTACAGTAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29973</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>80137</contig_pos>
        <strand></strand>
        <context>acartaatcc[T/C]rataactaca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACAATAATCC</left_flank>
        <right_flank>GATAACTACAGTAATCTTAATAACTACAGTAATCCCAATAACGACAGTAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACGGTAACTGAATTTTTGAATTTCAATTTTTCTAATTTGAAATTTTCAGACGAACCACGAGTTCCATTACTTGCTCCAATGCCGAAAAATGAGAATACGGTTCCCAGTAAGTTAGAAAAATTCTAGAATTTCTTCTAAAATTTAAATTTAAAAATTGAAAATTTAAATTTCAGAAAAGCAATTCAACGAAATGCTTGACGAGTGTGCAAAAATGTTCCAAACACACAAAAAACGATTGTCTGCCGCCAAGAATGTTGTAAGTGAATGAGTCTACAGTAGTCCTGGAAAATACAGTAATCCTAATCAGTACAGTAATCCTAATAACTACAGTTATCCCAATAACTACAGTAAACCAATAACTACAGTAATCCCAATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCTTAATAACTACAGTAATCCCAATAACGACAGTAATCCTGATTACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAA</canonical>
            <polymorphic>TGACGGTAACTGAATTTTTGAATTTCAATTTTTCTAATTTGAAATTTTCAGACGAACCACGAGTTCCATTACTTGCTCCAATGCCGAAAAATGAGAATACGGTTCCCAGTAAGTTAGAAAAATTCTAGAATTTCTTCTAAAATTTAAATTTAAAAATTGAAAATTTAAATTTCAGAAAAGCAATTCAACGAAATGCTTGACGAGTGTGCAAAAATGTTCCAAACACACAAAAAACGATTGTCTGCCGCCAAGAATGTTGTAAGTGAATGAGTCTACAGTAGTCCTGGAAAATACAGTAATCCTAATCAGTACAGTAATCCTAATAACTACAGTTATCCCAATAACTACAGTAAACCAATAACTACAGTAATCCCAATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCYGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCTTAATAACTACAGTAATCCCAATAACGACAGTAATCCTGATTACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATAACGACAGTAATGCTGAT</pcr_primer_p1>
		<pcr_primer_p2>GCTGAAAATATTGTTTTACGATTA</pcr_primer_p2>
		<pcr_amplicon_size>702</pcr_amplicon_size>
		<canonical_amplicon>CAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCYGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCTTAATAA</canonical_amplicon>
		<polymorphic_amplicon>CAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCYGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCTTAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29974</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>80138</contig_pos>
        <strand></strand>
        <context>cartaatccy[G/A]ataactacag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACAATAATCCT</left_flank>
        <right_flank>ATAACTACAGTAATCTTAATAACTACAGTAATCCCAATAACGACAGTAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACGGTAACTGAATTTTTGAATTTCAATTTTTCTAATTTGAAATTTTCAGACGAACCACGAGTTCCATTACTTGCTCCAATGCCGAAAAATGAGAATACGGTTCCCAGTAAGTTAGAAAAATTCTAGAATTTCTTCTAAAATTTAAATTTAAAAATTGAAAATTTAAATTTCAGAAAAGCAATTCAACGAAATGCTTGACGAGTGTGCAAAAATGTTCCAAACACACAAAAAACGATTGTCTGCCGCCAAGAATGTTGTAAGTGAATGAGTCTACAGTAGTCCTGGAAAATACAGTAATCCTAATCAGTACAGTAATCCTAATAACTACAGTTATCCCAATAACTACAGTAAACCAATAACTACAGTAATCCCAATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCTTAATAACTACAGTAATCCCAATAACGACAGTAATCCTGATTACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAAT</canonical>
            <polymorphic>GACGGTAACTGAATTTTTGAATTTCAATTTTTCTAATTTGAAATTTTCAGACGAACCACGAGTTCCATTACTTGCTCCAATGCCGAAAAATGAGAATACGGTTCCCAGTAAGTTAGAAAAATTCTAGAATTTCTTCTAAAATTTAAATTTAAAAATTGAAAATTTAAATTTCAGAAAAGCAATTCAACGAAATGCTTGACGAGTGTGCAAAAATGTTCCAAACACACAAAAAACGATTGTCTGCCGCCAAGAATGTTGTAAGTGAATGAGTCTACAGTAGTCCTGGAAAATACAGTAATCCTAATCAGTACAGTAATCCTAATAACTACAGTTATCCCAATAACTACAGTAAACCAATAACTACAGTAATCCCAATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTRATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCTTAATAACTACAGTAATCCCAATAACGACAGTAATCCTGATTACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>337 215 198 124 54 36 36</canonical_bands>
                <polymorphic_bands>373 215 198 124 54 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATAACGACAGTAATGCTGAT</pcr_primer_p1>
		<pcr_primer_p2>GCTGAAAATATTGTTTTACGATTA</pcr_primer_p2>
		<pcr_amplicon_size>702</pcr_amplicon_size>
		<canonical_amplicon>CAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTRATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCTTAATAAC</canonical_amplicon>
		<polymorphic_amplicon>CAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTRATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCTTAATAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29975</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>80154</contig_pos>
        <strand></strand>
        <context>tacagtaatc[T/C]yaataactac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATC</left_flank>
        <right_flank>TAATAACTACAGTAATCCCAATAACGACAGTAATCCTGATTACTACAGTA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAATTTCAATTTTTCTAATTTGAAATTTTCAGACGAACCACGAGTTCCATTACTTGCTCCAATGCCGAAAAATGAGAATACGGTTCCCAGTAAGTTAGAAAAATTCTAGAATTTCTTCTAAAATTTAAATTTAAAAATTGAAAATTTAAATTTCAGAAAAGCAATTCAACGAAATGCTTGACGAGTGTGCAAAAATGTTCCAAACACACAAAAAACGATTGTCTGCCGCCAAGAATGTTGTAAGTGAATGAGTCTACAGTAGTCCTGGAAAATACAGTAATCCTAATCAGTACAGTAATCCTAATAACTACAGTTATCCCAATAACTACAGTAAACCAATAACTACAGTAATCCCAATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCTTAATAACTACAGTAATCCCAATAACGACAGTAATCCTGATTACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATA</canonical>
            <polymorphic>TTGAATTTCAATTTTTCTAATTTGAAATTTTCAGACGAACCACGAGTTCCATTACTTGCTCCAATGCCGAAAAATGAGAATACGGTTCCCAGTAAGTTAGAAAAATTCTAGAATTTCTTCTAAAATTTAAATTTAAAAATTGAAAATTTAAATTTCAGAAAAGCAATTCAACGAAATGCTTGACGAGTGTGCAAAAATGTTCCAAACACACAAAAAACGATTGTCTGCCGCCAAGAATGTTGTAAGTGAATGAGTCTACAGTAGTCCTGGAAAATACAGTAATCCTAATCAGTACAGTAATCCTAATAACTACAGTTATCCCAATAACTACAGTAAACCAATAACTACAGTAATCCCAATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCYTAATAACTACAGTAATCCCAATAACGACAGTAATCCTGATTACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>316 234 212 127 54 36 15 6</canonical_bands>
                <polymorphic_bands>316 234 212 127 90 15 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATAACGACAGTAATGCTGAT</pcr_primer_p1>
		<pcr_primer_p2>GCTGAAAATATTGTTTTACGATTA</pcr_primer_p2>
		<pcr_amplicon_size>702</pcr_amplicon_size>
		<canonical_amplicon>CAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCTTAATAACTACAGTAATCCCAATA</canonical_amplicon>
		<polymorphic_amplicon>CAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCYTAATAACTACAGTAATCCCAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29976</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>80155</contig_pos>
        <strand></strand>
        <context>acagtaatcy[T/C]aataactaca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCT</left_flank>
        <right_flank>AATAACTACAGTAATCCCAATAACGACAGTAATCCTGATTACTACAGTAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAATTTCAATTTTTCTAATTTGAAATTTTCAGACGAACCACGAGTTCCATTACTTGCTCCAATGCCGAAAAATGAGAATACGGTTCCCAGTAAGTTAGAAAAATTCTAGAATTTCTTCTAAAATTTAAATTTAAAAATTGAAAATTTAAATTTCAGAAAAGCAATTCAACGAAATGCTTGACGAGTGTGCAAAAATGTTCCAAACACACAAAAAACGATTGTCTGCCGCCAAGAATGTTGTAAGTGAATGAGTCTACAGTAGTCCTGGAAAATACAGTAATCCTAATCAGTACAGTAATCCTAATAACTACAGTTATCCCAATAACTACAGTAAACCAATAACTACAGTAATCCCAATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCTTAATAACTACAGTAATCCCAATAACGACAGTAATCCTGATTACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAA</canonical>
            <polymorphic>TGAATTTCAATTTTTCTAATTTGAAATTTTCAGACGAACCACGAGTTCCATTACTTGCTCCAATGCCGAAAAATGAGAATACGGTTCCCAGTAAGTTAGAAAAATTCTAGAATTTCTTCTAAAATTTAAATTTAAAAATTGAAAATTTAAATTTCAGAAAAGCAATTCAACGAAATGCTTGACGAGTGTGCAAAAATGTTCCAAACACACAAAAAACGATTGTCTGCCGCCAAGAATGTTGTAAGTGAATGAGTCTACAGTAGTCCTGGAAAATACAGTAATCCTAATCAGTACAGTAATCCTAATAACTACAGTTATCCCAATAACTACAGTAAACCAATAACTACAGTAATCCCAATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCTYAATAACTACAGTAATCCCAATAACGACAGTAATCCTGATTACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>316 234 213 126 54 36 15 6</canonical_bands>
                <polymorphic_bands>316 234 213 126 90 15 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATAACGACAGTAATGCTGAT</pcr_primer_p1>
		<pcr_primer_p2>GCTGAAAATATTGTTTTACGATTA</pcr_primer_p2>
		<pcr_amplicon_size>702</pcr_amplicon_size>
		<canonical_amplicon>CAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCTTAATAACTACAGTAATCCCAATAA</canonical_amplicon>
		<polymorphic_amplicon>CAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCTYAATAACTACAGTAATCCCAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29977</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>80330</contig_pos>
        <strand></strand>
        <context>taactacagt[C/A]atccyaataa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGT</left_flank>
        <right_flank>ATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAA</right_flank>
        <qual_score>33</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTTGACGAGTGTGCAAAAATGTTCCAAACACACAAAAAACGATTGTCTGCCGCCAAGAATGTTGTAAGTGAATGAGTCTACAGTAGTCCTGGAAAATACAGTAATCCTAATCAGTACAGTAATCCTAATAACTACAGTTATCCCAATAACTACAGTAAACCAATAACTACAGTAATCCCAATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCTTAATAACTACAGTAATCCCAATAACGACAGTAATCCTGATTACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCTAATAACTACAGTAATCGTAAAACAATATTTTCAGCCAGCATTTGTTGCCTGTACGTACTGTAGCAAACCAGATGCGAAACCATTGGCACCCAGCAATGTGCAGGATCAATTATTGCA</canonical>
            <polymorphic>TGCTTGACGAGTGTGCAAAAATGTTCCAAACACACAAAAAACGATTGTCTGCCGCCAAGAATGTTGTAAGTGAATGAGTCTACAGTAGTCCTGGAAAATACAGTAATCCTAATCAGTACAGTAATCCTAATAACTACAGTTATCCCAATAACTACAGTAAACCAATAACTACAGTAATCCCAATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCTTAATAACTACAGTAATCCCAATAACGACAGTAATCCTGATTACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTMATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCTAATAACTACAGTAATCGTAAAACAATATTTTCAGCCAGCATTTGTTGCCTGTACGTACTGTAGCAAACCAGATGCGAAACCATTGGCACCCAGCAATGTGCAGGATCAATTATTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATAACGACAGTAATGCTGAT</pcr_primer_p1>
		<pcr_primer_p2>GCTGAAAATATTGTTTTACGATTA</pcr_primer_p2>
		<pcr_amplicon_size>702</pcr_amplicon_size>
		<canonical_amplicon>CAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCTTAATAACTACAGTAATCCCAATAACGACAGTAATCCTGATTACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCTAATAACTACAGTAATCGTAAAACAATATTTTCAGC</canonical_amplicon>
		<polymorphic_amplicon>CAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCTTAATAACTACAGTAATCCCAATAACGACAGTAATCCTGATTACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTMATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCTAATAACTACAGTAATCGTAAAACAATATTTTCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29978</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>80335</contig_pos>
        <strand></strand>
        <context>acagtmatcc[C/T]aataactama</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCC</left_flank>
        <right_flank>AATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGG</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGAGTGTGCAAAAATGTTCCAAACACACAAAAAACGATTGTCTGCCGCCAAGAATGTTGTAAGTGAATGAGTCTACAGTAGTCCTGGAAAATACAGTAATCCTAATCAGTACAGTAATCCTAATAACTACAGTTATCCCAATAACTACAGTAAACCAATAACTACAGTAATCCCAATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCTTAATAACTACAGTAATCCCAATAACGACAGTAATCCTGATTACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCTAATAACTACAGTAATCGTAAAACAATATTTTCAGCCAGCATTTGTTGCCTGTACGTACTGTAGCAAACCAGATGCGAAACCATTGGCACCCAGCAATGTGCAGGATCAATTATTGCACATTT</canonical>
            <polymorphic>GACGAGTGTGCAAAAATGTTCCAAACACACAAAAAACGATTGTCTGCCGCCAAGAATGTTGTAAGTGAATGAGTCTACAGTAGTCCTGGAAAATACAGTAATCCTAATCAGTACAGTAATCCTAATAACTACAGTTATCCCAATAACTACAGTAAACCAATAACTACAGTAATCCCAATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCTTAATAACTACAGTAATCCCAATAACGACAGTAATCCTGATTACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCYAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCTAATAACTACAGTAATCGTAAAACAATATTTTCAGCCAGCATTTGTTGCCTGTACGTACTGTAGCAAACCAGATGCGAAACCATTGGCACCCAGCAATGTGCAGGATCAATTATTGCACATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATAACGACAGTAATGCTGAT</pcr_primer_p1>
		<pcr_primer_p2>GCTGAAAATATTGTTTTACGATTA</pcr_primer_p2>
		<pcr_amplicon_size>702</pcr_amplicon_size>
		<canonical_amplicon>CAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCTTAATAACTACAGTAATCCCAATAACGACAGTAATCCTGATTACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCTAATAACTACAGTAATCGTAAAACAATATTTTCAGC</canonical_amplicon>
		<polymorphic_amplicon>CAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCTTAATAACTACAGTAATCCCAATAACGACAGTAATCCTGATTACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCYAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCTAATAACTACAGTAATCGTAAAACAATATTTTCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29979</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>80344</contig_pos>
        <strand></strand>
        <context>cyaataacta[C/A]agtaatccca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTA</left_flank>
        <right_flank>AGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAA</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAAAAATGTTCCAAACACACAAAAAACGATTGTCTGCCGCCAAGAATGTTGTAAGTGAATGAGTCTACAGTAGTCCTGGAAAATACAGTAATCCTAATCAGTACAGTAATCCTAATAACTACAGTTATCCCAATAACTACAGTAAACCAATAACTACAGTAATCCCAATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCTTAATAACTACAGTAATCCCAATAACGACAGTAATCCTGATTACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCTAATAACTACAGTAATCGTAAAACAATATTTTCAGCCAGCATTTGTTGCCTGTACGTACTGTAGCAAACCAGATGCGAAACCATTGGCACCCAGCAATGTGCAGGATCAATTATTGCACATTTTGAAATTGA</canonical>
            <polymorphic>GCAAAAATGTTCCAAACACACAAAAAACGATTGTCTGCCGCCAAGAATGTTGTAAGTGAATGAGTCTACAGTAGTCCTGGAAAATACAGTAATCCTAATCAGTACAGTAATCCTAATAACTACAGTTATCCCAATAACTACAGTAAACCAATAACTAMAGTAATCCCAATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCTTAATAACTACAGTAATCCCAATAACGACAGTAATCCTGATTACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCTAATAACTACAGTAATCGTAAAACAATATTTTCAGCCAGCATTTGTTGCCTGTACGTACTGTAGCAAACCAGATGCGAAACCATTGGCACCCAGCAATGTGCAGGATCAATTATTGCACATTTTGAAATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>90 90 73 72 66 54 54 54 52 36 36 36 36 36 18 18 18 18 18 18 18 18 18 18 18 17</canonical_bands>
                <polymorphic_bands>90 90 73 72 66 54 54 54 52 36 36 36 36 36 35 18 18 18 18 18 18 18 18 18 18</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>72 70 54 54 49 36 36 36 36 36 36 36 36 18 18 18 18 18 18 18 18 18 18 18 18 18 18 18 18 18 18 18 18 18 18 17</canonical_bands>
                <polymorphic_bands>72 70 54 54 49 36 36 36 36 36 36 36 36 35 18 18 18 18 18 18 18 18 18 18 18 18 18 18 18 18 18 18 18 18 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATAACGACAGTAATGCTGAT</pcr_primer_p1>
		<pcr_primer_p2>GCTGAAAATATTGTTTTACGATTA</pcr_primer_p2>
		<pcr_amplicon_size>702</pcr_amplicon_size>
		<canonical_amplicon>CAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCTTAATAACTACAGTAATCCCAATAACGACAGTAATCCTGATTACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCTAATAACTACAGTAATCGTAAAACAATATTTTCAGC</canonical_amplicon>
		<polymorphic_amplicon>CAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCTTAATAACTACAGTAATCCCAATAACGACAGTAATCCTGATTACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCTAATAACTACAGTAATCGTAAAACAATATTTTCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29980</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>80360</contig_pos>
        <strand></strand>
        <context>tcccaataac[T/G]acagtaattc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAAC</left_flank>
        <right_flank>ACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTAT</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACACAAAAAACGATTGTCTGCCGCCAAGAATGTTGTAAGTGAATGAGTCTACAGTAGTCCTGGAAAATACAGTAATCCTAATCAGTACAGTAATCCTAATAACTACAGTTATCCCAATAACTACAGTAAACCAATAACTACAGTAATCCCAATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCTTAATAACTACAGTAATCCCAATAACGACAGTAATCCTGATTACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCTAATAACTACAGTAATCGTAAAACAATATTTTCAGCCAGCATTTGTTGCCTGTACGTACTGTAGCAAACCAGATGCGAAACCATTGGCACCCAGCAATGTGCAGGATCAATTATTGCACATTTTGAAATTGACACATCGGGAGAATGT</canonical>
            <polymorphic>CACACAAAAAACGATTGTCTGCCGCCAAGAATGTTGTAAGTGAATGAGTCTACAGTAGTCCTGGAAAATACAGTAATCCTAATCAGTACAGTAATCCTAATAACTACAGTTATCCCAATAACTACAGTAAACCAATAACTACAGTAATCCCAATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCTTAATAACTACAGTAATCCCAATAACGACAGTAATCCTGATTACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACKACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCTAATAACTACAGTAATCGTAAAACAATATTTTCAGCCAGCATTTGTTGCCTGTACGTACTGTAGCAAACCAGATGCGAAACCATTGGCACCCAGCAATGTGCAGGATCAATTATTGCACATTTTGAAATTGACACATCGGGAGAATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>90 90 89 72 54 54 54 52 50 36 36 36 36 36 18 18 18 18 18 18 18 18 18 18 18 17</canonical_bands>
                <polymorphic_bands>108 90 89 72 54 54 54 52 50 36 36 36 36 36 18 18 18 18 18 18 18 18 18 18 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATAACGACAGTAATGCTGAT</pcr_primer_p1>
		<pcr_primer_p2>GCTGAAAATATTGTTTTACGATTA</pcr_primer_p2>
		<pcr_amplicon_size>702</pcr_amplicon_size>
		<canonical_amplicon>CAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCTTAATAACTACAGTAATCCCAATAACGACAGTAATCCTGATTACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCTAATAACTACAGTAATCGTAAAACAATATTTTCAGC</canonical_amplicon>
		<polymorphic_amplicon>CAATAACGACAGTAATGCTGATTACTACAGTAATCCGTATGACTACAATAATCCTGATAACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCTTAATAACTACAGTAATCCCAATAACGACAGTAATCCTGATTACTACAGTAATCTTAATGACTACAATAATCCTGATAACTACAGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACKACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCCAATAACAAAATTGGTCCCAATAACGACAGTAATCCGTATGACTACAGTAATCCCAATAACTACAGTAATCCTAATAACTACAGTCATCCCAATAACTACAGTAATCCCAATAACTACAGTAATTCTAATAACTAAAGTGGTCCCAATAACGACAGTAATCCGTATGACTACAATAATCCTGATAACTAGAGTAATCTTAATAACTACAGTAATCCTTATAACTACCGTAATCCTAATAACTACAGTAATCGTAAAACAATATTTTCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29981</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>109608</contig_pos>
        <strand></strand>
        <context>caaacttgca[A/G]aagttaggcc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGTATTTTTAGGTCGTTTTGAGGTCGTGGCCTAGAAGACCAAACTTGCA</left_flank>
        <right_flank>AAGTTAGGCCACCACTTCAAAGTTAAAAAAAAAAAGCTCTCTAACCATCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGTCGTTTTGGCTCGAAATCCACACTCCAAAAACTGAATTGTCCCAAAAACATAGCCTGGCCGAGTTCCAGGTGATGGCCTAACTTTTGCAAATTTGGTTTTCTAGGCCACCACTTCAAAATGGCCTAGAAAACACACCAGGGTCATGGCAGGCCATTTATAAGCCATTTTAACGTGGTGGCCTTTTGGTGGTTTTCTAGGCCACTGGGCCACCAGTGCTCTTTTTGGTCGTTTTCGCTCGAAATCCACACCCAAAAAATTGAATTTGCCCCACTCTAAAAACTGTAAAATAGAGGTGATGGCCTAACTTTTGCAAGTTTAGTCACGTTAAAATTGCCTATGGTATGGTTTCTAGGTCATTTTGAAGTGGTGGCCTAGAAAACCAACTTTGCAAAAGTTAGGCCACCACTTTAGAATGACCTAGAAAGCACACCTGGGTCATGTTAGGGTATTTTTAGGTCGTTTTGAGGTCGTGGCCTAGAAGACCAAACTTGCAAAAGTTAGGCCACCACTTCAAAGTTAAAAAAAAAAAGCTCTCTAACCATCATTCGCAGTTTCAGCAATTCCAACAACTGGCCGCCGCCGCCGCAGCCTCATCGGTCGCCGTCTCGACGCCGTCCCGCAACCAGTCCACGTCAGGAGCCGCGTCACGAACACGAACCCCTCTGACGCAGTCGGCGACCAACTCGCCCCGCCCCACCACGGAGCTAACGATCAAAGACGAGGAGCCGGAGCAACCGGAGACGAACGGTGTGGCTGCTGCTGCCGCAGTCACCACGGCGGCCGCCTCGATCAAGCAAGAGGAGAATTCGACGGTCGCCGTCGCATAGTCACTTTATCGATTTTTTTCTCTTCTCTTGTTTCTAGTTGTTTTCTCTTGTTTTTTTTTTACGATTTTTGAGTGATTTTAGGCGAAAATTCGGCTGAAATTGGTCTAGAAACCCTGAAAATCCCGTTAAAAATGATCTCAAAATCCAAAAAGTCGATAGAAAGAGCG</canonical>
            <polymorphic>TTTGGTCGTTTTGGCTCGAAATCCACACTCCAAAAACTGAATTGTCCCAAAAACATAGCCTGGCCGAGTTCCAGGTGATGGCCTAACTTTTGCAAATTTGGTTTTCTAGGCCACCACTTCAAAATGGCCTAGAAAACACACCAGGGTCATGGCAGGCCATTTATAAGCCATTTTAACGTGGTGGCCTTTTGGTGGTTTTCTAGGCCACTGGGCCACCAGTGCTCTTTTTGGTCGTTTTCGCTCGAAATCCACACCCAAAAAATTGAATTTGCCCCACTCTAAAAACTGTAAAATAGAGGTGATGGCCTAACTTTTGCAAGTTTAGTCACGTTAAAATTGCCTATGGTATGGTTTCTAGGTCATTTTGAAGTGGTGGCCTAGAAAACCAACTTTGCAAAAGTTAGGCCACCACTTTAGAATGACCTAGAAAGCACACCTGGGTCATGTTAGGGTATTTTTAGGTCGTTTTGAGGTCGTGGCCTAGAAGACCAAACTTGCARAAGTTAGGCCACCACTTCAAAGTTAAAAAAAAAAAGCTCTCTAACCATCATTCGCAGTTTCAGCAATTCCAACAACTGGCCGCCGCCGCCGCAGCCTCATCGGTCGCCGTCTCGACGCCGTCCCGCAACCAGTCCACGTCAGGAGCCGCGTCACGAACACGAACCCCTCTGACGCAGTCGGCGACCAACTCGCCCCGCCCCACCACGGAGCTAACGATCAAAGACGAGGAGCCGGAGCAACCGGAGACGAACGGTGTGGCTGCTGCTGCCGCAGTCACCACGGCGGCCGCCTCGATCAAGCAAGAGGAGAATTCGACGGTCGCCGTCGCATAGTCACTTTATCGATTTTTTTCTCTTCTCTTGTTTCTAGTTGTTTTCTCTTGTTTTTTTTTTACGATTTTTGAGTGATTTTAGGCGAAAATTCGGCTGAAATTGGTCTAGAAACCCTGAAAATCCCGTTAAAAATGATCTCAAAATCCAAAAAGTCGATAGAAAGAGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCACTCTAAAAACTGTAAAATAGA</pcr_primer_p1>
		<pcr_primer_p2>GAATGATGGTTAGAGAGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>281</pcr_amplicon_size>
		<canonical_amplicon>CCCACTCTAAAAACTGTAAAATAGAGGTGATGGCCTAACTTTTGCAAGTTTAGTCACGTTAAAATTGCCTATGGTATGGTTTCTAGGTCATTTTGAAGTGGTGGCCTAGAAAACCAACTTTGCAAAAGTTAGGCCACCACTTTAGAATGACCTAGAAAGCACACCTGGGTCATGTTAGGGTATTTTTAGGTCGTTTTGAGGTCGTGGCCTAGAAGACCAAACTTGCAAAAGTTAGGCCACCACTTCAAAGTTAAAAAAAAAAAGCTCTCTAACCATCATTC</canonical_amplicon>
		<polymorphic_amplicon>CCCACTCTAAAAACTGTAAAATAGAGGTGATGGCCTAACTTTTGCAAGTTTAGTCACGTTAAAATTGCCTATGGTATGGTTTCTAGGTCATTTTGAAGTGGTGGCCTAGAAAACCAACTTTGCAAAAGTTAGGCCACCACTTTAGAATGACCTAGAAAGCACACCTGGGTCATGTTAGGGTATTTTTAGGTCGTTTTGAGGTCGTGGCCTAGAAGACCAAACTTGCARAAGTTAGGCCACCACTTCAAAGTTAAAAAAAAAAAGCTCTCTAACCATCATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29982</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>109632</contig_pos>
        <strand></strand>
        <context>acttcaaaGT[T/G]AMAAAAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TCGTGGCCTAGAAGACCAAACTTGCAAAAGTTAGGCCACCACTTCAAAGT</left_flank>
        <right_flank>AAAAAAAAAAAGCTCTCTAACCATCATTCGCAGTTTCAGCAATTCCAACA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACTCCAAAAACTGAATTGTCCCAAAAACATAGCCTGGCCGAGTTCCAGGTGATGGCCTAACTTTTGCAAATTTGGTTTTCTAGGCCACCACTTCAAAATGGCCTAGAAAACACACCAGGGTCATGGCAGGCCATTTATAAGCCATTTTAACGTGGTGGCCTTTTGGTGGTTTTCTAGGCCACTGGGCCACCAGTGCTCTTTTTGGTCGTTTTCGCTCGAAATCCACACCCAAAAAATTGAATTTGCCCCACTCTAAAAACTGTAAAATAGAGGTGATGGCCTAACTTTTGCAAGTTTAGTCACGTTAAAATTGCCTATGGTATGGTTTCTAGGTCATTTTGAAGTGGTGGCCTAGAAAACCAACTTTGCAAAAGTTAGGCCACCACTTTAGAATGACCTAGAAAGCACACCTGGGTCATGTTAGGGTATTTTTAGGTCGTTTTGAGGTCGTGGCCTAGAAGACCAAACTTGCAAAAGTTAGGCCACCACTTCAAAGTTAAAAAAAAAAAGCTCTCTAACCATCATTCGCAGTTTCAGCAATTCCAACAACTGGCCGCCGCCGCCGCAGCCTCATCGGTCGCCGTCTCGACGCCGTCCCGCAACCAGTCCACGTCAGGAGCCGCGTCACGAACACGAACCCCTCTGACGCAGTCGGCGACCAACTCGCCCCGCCCCACCACGGAGCTAACGATCAAAGACGAGGAGCCGGAGCAACCGGAGACGAACGGTGTGGCTGCTGCTGCCGCAGTCACCACGGCGGCCGCCTCGATCAAGCAAGAGGAGAATTCGACGGTCGCCGTCGCATAGTCACTTTATCGATTTTTTTCTCTTCTCTTGTTTCTAGTTGTTTTCTCTTGTTTTTTTTTTACGATTTTTGAGTGATTTTAGGCGAAAATTCGGCTGAAATTGGTCTAGAAACCCTGAAAATCCCGTTAAAAATGATCTCAAAATCCAAAAAGTCGATAGAAAGAGCGAACTGTTATGGTGGCCTAGAAAAC</canonical>
            <polymorphic>ACACTCCAAAAACTGAATTGTCCCAAAAACATAGCCTGGCCGAGTTCCAGGTGATGGCCTAACTTTTGCAAATTTGGTTTTCTAGGCCACCACTTCAAAATGGCCTAGAAAACACACCAGGGTCATGGCAGGCCATTTATAAGCCATTTTAACGTGGTGGCCTTTTGGTGGTTTTCTAGGCCACTGGGCCACCAGTGCTCTTTTTGGTCGTTTTCGCTCGAAATCCACACCCAAAAAATTGAATTTGCCCCACTCTAAAAACTGTAAAATAGAGGTGATGGCCTAACTTTTGCAAGTTTAGTCACGTTAAAATTGCCTATGGTATGGTTTCTAGGTCATTTTGAAGTGGTGGCCTAGAAAACCAACTTTGCAAAAGTTAGGCCACCACTTTAGAATGACCTAGAAAGCACACCTGGGTCATGTTAGGGTATTTTTAGGTCGTTTTGAGGTCGTGGCCTAGAAGACCAAACTTGCAAAAGTTAGGCCACCACTTCAAAGTKAAAAAAAAAAAGCTCTCTAACCATCATTCGCAGTTTCAGCAATTCCAACAACTGGCCGCCGCCGCCGCAGCCTCATCGGTCGCCGTCTCGACGCCGTCCCGCAACCAGTCCACGTCAGGAGCCGCGTCACGAACACGAACCCCTCTGACGCAGTCGGCGACCAACTCGCCCCGCCCCACCACGGAGCTAACGATCAAAGACGAGGAGCCGGAGCAACCGGAGACGAACGGTGTGGCTGCTGCTGCCGCAGTCACCACGGCGGCCGCCTCGATCAAGCAAGAGGAGAATTCGACGGTCGCCGTCGCATAGTCACTTTATCGATTTTTTTCTCTTCTCTTGTTTCTAGTTGTTTTCTCTTGTTTTTTTTTTACGATTTTTGAGTGATTTTAGGCGAAAATTCGGCTGAAATTGGTCTAGAAACCCTGAAAATCCCGTTAAAAATGATCTCAAAATCCAAAAAGTCGATAGAAAGAGCGAACTGTTATGGTGGCCTAGAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>436 192 158 149 65</canonical_bands>
                <polymorphic_bands>628 158 149 65</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCCACTCTAAAAACTGTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTGTTGGAATTGCTGAAACT</pcr_primer_p2>
		<pcr_amplicon_size>304</pcr_amplicon_size>
		<canonical_amplicon>CCCCACTCTAAAAACTGTAAAATAGAGGTGATGGCCTAACTTTTGCAAGTTTAGTCACGTTAAAATTGCCTATGGTATGGTTTCTAGGTCATTTTGAAGTGGTGGCCTAGAAAACCAACTTTGCAAAAGTTAGGCCACCACTTTAGAATGACCTAGAAAGCACACCTGGGTCATGTTAGGGTATTTTTAGGTCGTTTTGAGGTCGTGGCCTAGAAGACCAAACTTGCAAAAGTTAGGCCACCACTTCAAAGTTAAAAAAAAAAAGCTCTCTAACCATCATTCGCAGTTTCAGCAATTCCAACAA</canonical_amplicon>
		<polymorphic_amplicon>CCCCACTCTAAAAACTGTAAAATAGAGGTGATGGCCTAACTTTTGCAAGTTTAGTCACGTTAAAATTGCCTATGGTATGGTTTCTAGGTCATTTTGAAGTGGTGGCCTAGAAAACCAACTTTGCAAAAGTTAGGCCACCACTTTAGAATGACCTAGAAAGCACACCTGGGTCATGTTAGGGTATTTTTAGGTCGTTTTGAGGTCGTGGCCTAGAAGACCAAACTTGCAAAAGTTAGGCCACCACTTCAAAGTKAAAAAAAAAAAGCTCTCTAACCATCATTCGCAGTTTCAGCAATTCCAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29983</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>109634</contig_pos>
        <strand></strand>
        <context>ttcaaaGTKA[A/C]AAAAAAAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTGGCCTAGAAGACCAAACTTGCAAAAGTTAGGCCACCACTTCAAAGTTA</left_flank>
        <right_flank>AAAAAAAAAGCTCTCTAACCATCATTCGCAGTTTCAGCAATTCCAACAAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCCAAAAACTGAATTGTCCCAAAAACATAGCCTGGCCGAGTTCCAGGTGATGGCCTAACTTTTGCAAATTTGGTTTTCTAGGCCACCACTTCAAAATGGCCTAGAAAACACACCAGGGTCATGGCAGGCCATTTATAAGCCATTTTAACGTGGTGGCCTTTTGGTGGTTTTCTAGGCCACTGGGCCACCAGTGCTCTTTTTGGTCGTTTTCGCTCGAAATCCACACCCAAAAAATTGAATTTGCCCCACTCTAAAAACTGTAAAATAGAGGTGATGGCCTAACTTTTGCAAGTTTAGTCACGTTAAAATTGCCTATGGTATGGTTTCTAGGTCATTTTGAAGTGGTGGCCTAGAAAACCAACTTTGCAAAAGTTAGGCCACCACTTTAGAATGACCTAGAAAGCACACCTGGGTCATGTTAGGGTATTTTTAGGTCGTTTTGAGGTCGTGGCCTAGAAGACCAAACTTGCAAAAGTTAGGCCACCACTTCAAAGTTAAAAAAAAAAAGCTCTCTAACCATCATTCGCAGTTTCAGCAATTCCAACAACTGGCCGCCGCCGCCGCAGCCTCATCGGTCGCCGTCTCGACGCCGTCCCGCAACCAGTCCACGTCAGGAGCCGCGTCACGAACACGAACCCCTCTGACGCAGTCGGCGACCAACTCGCCCCGCCCCACCACGGAGCTAACGATCAAAGACGAGGAGCCGGAGCAACCGGAGACGAACGGTGTGGCTGCTGCTGCCGCAGTCACCACGGCGGCCGCCTCGATCAAGCAAGAGGAGAATTCGACGGTCGCCGTCGCATAGTCACTTTATCGATTTTTTTCTCTTCTCTTGTTTCTAGTTGTTTTCTCTTGTTTTTTTTTTACGATTTTTGAGTGATTTTAGGCGAAAATTCGGCTGAAATTGGTCTAGAAACCCTGAAAATCCCGTTAAAAATGATCTCAAAATCCAAAAAGTCGATAGAAAGAGCGAACTGTTATGGTGGCCTAGAAAACCC</canonical>
            <polymorphic>ACTCCAAAAACTGAATTGTCCCAAAAACATAGCCTGGCCGAGTTCCAGGTGATGGCCTAACTTTTGCAAATTTGGTTTTCTAGGCCACCACTTCAAAATGGCCTAGAAAACACACCAGGGTCATGGCAGGCCATTTATAAGCCATTTTAACGTGGTGGCCTTTTGGTGGTTTTCTAGGCCACTGGGCCACCAGTGCTCTTTTTGGTCGTTTTCGCTCGAAATCCACACCCAAAAAATTGAATTTGCCCCACTCTAAAAACTGTAAAATAGAGGTGATGGCCTAACTTTTGCAAGTTTAGTCACGTTAAAATTGCCTATGGTATGGTTTCTAGGTCATTTTGAAGTGGTGGCCTAGAAAACCAACTTTGCAAAAGTTAGGCCACCACTTTAGAATGACCTAGAAAGCACACCTGGGTCATGTTAGGGTATTTTTAGGTCGTTTTGAGGTCGTGGCCTAGAAGACCAAACTTGCAAAAGTTAGGCCACCACTTCAAAGTTAMAAAAAAAAAGCTCTCTAACCATCATTCGCAGTTTCAGCAATTCCAACAACTGGCCGCCGCCGCCGCAGCCTCATCGGTCGCCGTCTCGACGCCGTCCCGCAACCAGTCCACGTCAGGAGCCGCGTCACGAACACGAACCCCTCTGACGCAGTCGGCGACCAACTCGCCCCGCCCCACCACGGAGCTAACGATCAAAGACGAGGAGCCGGAGCAACCGGAGACGAACGGTGTGGCTGCTGCTGCCGCAGTCACCACGGCGGCCGCCTCGATCAAGCAAGAGGAGAATTCGACGGTCGCCGTCGCATAGTCACTTTATCGATTTTTTTCTCTTCTCTTGTTTCTAGTTGTTTTCTCTTGTTTTTTTTTTACGATTTTTGAGTGATTTTAGGCGAAAATTCGGCTGAAATTGGTCTAGAAACCCTGAAAATCCCGTTAAAAATGATCTCAAAATCCAAAAAGTCGATAGAAAGAGCGAACTGTTATGGTGGCCTAGAAAACCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>436 192 158 147 67</canonical_bands>
                <polymorphic_bands>628 158 147 67</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCCACTCTAAAAACTGTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGTTGTTGGAATTGCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>306</pcr_amplicon_size>
		<canonical_amplicon>CCCCACTCTAAAAACTGTAAAATAGAGGTGATGGCCTAACTTTTGCAAGTTTAGTCACGTTAAAATTGCCTATGGTATGGTTTCTAGGTCATTTTGAAGTGGTGGCCTAGAAAACCAACTTTGCAAAAGTTAGGCCACCACTTTAGAATGACCTAGAAAGCACACCTGGGTCATGTTAGGGTATTTTTAGGTCGTTTTGAGGTCGTGGCCTAGAAGACCAAACTTGCAAAAGTTAGGCCACCACTTCAAAGTTAAAAAAAAAAAGCTCTCTAACCATCATTCGCAGTTTCAGCAATTCCAACAACT</canonical_amplicon>
		<polymorphic_amplicon>CCCCACTCTAAAAACTGTAAAATAGAGGTGATGGCCTAACTTTTGCAAGTTTAGTCACGTTAAAATTGCCTATGGTATGGTTTCTAGGTCATTTTGAAGTGGTGGCCTAGAAAACCAACTTTGCAAAAGTTAGGCCACCACTTTAGAATGACCTAGAAAGCACACCTGGGTCATGTTAGGGTATTTTTAGGTCGTTTTGAGGTCGTGGCCTAGAAGACCAAACTTGCAAAAGTTAGGCCACCACTTCAAAGTTAMAAAAAAAAAGCTCTCTAACCATCATTCGCAGTTTCAGCAATTCCAACAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29984</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>110358</contig_pos>
        <strand>+</strand>
        <context>AATTATTGAY[C/T]TTTGGCTATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGATTTCTAAGAAGCCCCGCCCACTTTTTTCTTATTTAAAATTATTGAC</left_flank>
        <right_flank>TTTGGCTATTTTTATACCTATCGATCTCCCTAAGCCCCGCCCACATTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGGTGTGGCTGCTGCTGCCGCAGTCACCACGGCGGCCGCCTCGATCAAGCAAGAGGAGAATTCGACGGTCGCCGTCGCATAGTCACTTTATCGATTTTTTTCTCTTCTCTTGTTTCTAGTTGTTTTCTCTTGTTTTTTTTTTACGATTTTTGAGTGATTTTAGGCGAAAATTCGGCTGAAATTGGTCTAGAAACCCTGAAAATCCCGTTAAAAATGATCTCAAAATCCAAAAAGTCGATAGAAAGAGCGAACTGTTATGGTGGCCTAGAAAACCCAAACACTCGGCCATATGTTTTTTTTCGATTGTTAAATTTTTGAAAAAAATTCAGTCATTTTTTACCGAATTTTCGCCCCCCTCAAATCACTCGAATATTGGCTCCGCCCCTTTTTTTCCTAAATACTGGTCCTCTCAACCCCCACTCTCTCTCCGTTTTTCAACTGAAAATTATCGATTTCTAAGAAGCCCCGCCCACTTTTTTCTTATTTAAAATTATTGACTTTTGGCTATTTTTATACCTATCGATCTCCCTAAGCCCCGCCCACATTTTTTTTCAGTTGAAAATTATGAAAAATCGCTTTTCTCTCGTTTCTTCTCATCCCAATTTCATTGCAGCGCGGGTACTTTTTTATTTTGTTTAATTTAATTTTTTTTTCCGAAATTCAAAATTTTTAAAAATTTCCCAGTATTTTTTGTCGTTCTCTGCATTTTTTCGCTTTTTTGAGGTTTTTTCGTCGTCCCAAAACCCCCATTATTACACGTATTTTGTCGTTCCTTCCAGTGTTTTTCTTCTTTTGTCCTCCTCATCTTTTTATGGTCCTCTGAAAATACCCCTTGTAAAATATGAATCTCTGAATCTAATTCCTAAAAAAAGCTTTTGAAAGAGCCTTAAAAAGCCTACAAGCGGTCCAAAAAGACAAGAAAAAAATTGAAAAATCAAAAAATCATTTCACAAGGAACACCGCAAAAATCACATAATCCCGACAAATACAAAAAAAATT</canonical>
            <polymorphic>ACGGTGTGGCTGCTGCTGCCGCAGTCACCACGGCGGCCGCCTCGATCAAGCAAGAGGAGAATTCGACGGTCGCCGTCGCATAGTCACTTTATCGATTTTTTTCTCTTCTCTTGTTTCTAGTTGTTTTCTCTTGTTTTTTTTTTACGATTTTTGAGTGATTTTAGGCGAAAATTCGGCTGAAATTGGTCTAGAAACCCTGAAAATCCCGTTAAAAATGATCTCAAAATCCAAAAAGTCGATAGAAAGAGCGAACTGTTATGGTGGCCTAGAAAACCCAAACACTCGGCCATATGTTTTTTTTCGATTGTTAAATTTTTGAAAAAAATTCAGTCATTTTTTACCGAATTTTCGCCCCCCTCAAATCACTCGAATATTGGCTCCGCCCCTTTTTTTCCTAAATACTGGTCCTCTCAACCCCCACTCTCTCTCCGTTTTTCAACTGAAAATTATCGATTTCTAAGAAGCCCCGCCCACTTTTTTCTTATTTAAAATTATTGACYTTTGGCTATTTTTATACCTATCGATCTCCCTAAGCCCCGCCCACATTTTTTTTCAGTTGAAAATTATGAAAAATCGCTTTTCTCTCGTTTCTTCTCATCCCAATTTCATTGCAGCGCGGGTACTTTTTTATTTTGTTTAATTTAATTTTTTTTTCCGAAATTCAAAATTTTTAAAAATTTCCCAGTATTTTTTGTCGTTCTCTGCATTTTTTCGCTTTTTTGAGGTTTTTTCGTCGTCCCAAAACCCCCATTATTACACGTATTTTGTCGTTCCTTCCAGTGTTTTTCTTCTTTTGTCCTCCTCATCTTTTTATGGTCCTCTGAAAATACCCCTTGTAAAATATGAATCTCTGAATCTAATTCCTAAAAAAAGCTTTTGAAAGAGCCTTAAAAAGCCTACAAGCGGTCCAAAAAGACAAGAAAAAAATTGAAAAATCAAAAAATCATTTCACAAGGAACACCGCAAAAATCACATAATCCCGACAAATACAAAAAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCCTAAATACTGGTCCTCT</pcr_primer_p1>
		<pcr_primer_p2>GAAATTGGGATGAGAAGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>219</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCCTAAATACTGGTCCTCTCAACCCCCACTCTCTCTCCGTTTTTCAACTGAAAATTATCGATTTCTAAGAAGCCCCGCCCACTTTTTTCTTATTTAAAATTATTGACTTTTGGCTATTTTTATACCTATCGATCTCCCTAAGCCCCGCCCACATTTTTTTTCAGTTGAAAATTATGAAAAATCGCTTTTCTCTCGTTTCTTCTCATCCCAATTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCCTAAATACTGGTCCTCTCAACCCCCACTCTCTCTCCGTTTTTCAACTGAAAATTATCGATTTCTAAGAAGCCCCGCCCACTTTTTTCTTATTTAAAATTATTGACYTTTGGCTATTTTTATACCTATCGATCTCCCTAAGCCCCGCCCACATTTTTTTTCAGTTGAAAATTATGAAAAATCGCTTTTCTCTCGTTTCTTCTCATCCCAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29985</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>123027</contig_pos>
        <strand>+</strand>
        <context>TTTGTAAAGG[C/T]TGCATTTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGAGTAGGTTATAGCGGTTTTTATTGTTCTTTTTTCGTTTTGTAAAGG</left_flank>
        <right_flank>TGCATTTTCTATTTCGAATTCAATTATTACTGTGAATGCGCTCTGTGTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGCTGTTTTTGCAGTTCCTCGTGTATTTTTTGTTGACTCTTCTCCTCTTCCAGCCATTTTTCGACAGTTTGGAAGCCTTCCAGGGGCGGGATGTATCTGGAAATAGGTTATTTAAAAAAGCAAAAAGGGGCGAATAGGAGTCGAACCCGCGTCCTGGAGATTGAGAGGCAGCGCTGTTGCCGCCTGCGCCACGCGGGCTCAAATGTTAGGTAGTGGGTGCGGGCGTAGAAGAGCGTGTGGGATTTCAAAGCTTTGAGAGGAGAGGGAGGGGGAGGGAGGGGCCTGGTTGGGTTGGGTTTTGAAAAGTAATAGAACCTAAAAGGGTGTAAAAGTACTTGAAAATGGGAATCCTTGTCCTCCTCCATTCAAATGTTGTTTTAAGTGGAGAATATACTAGGTCTTTTTGTGAATACACTTGTAGTACAAAAGGTTTGTTTTCCAATGATGATTGAGTAGGTTATAGCGGTTTTTATTGTTCTTTTTTCGTTTTGTAAAGGTTGCATTTTCTATTTCGAATTCAATTATTACTGTGAATGCGCTCTGTGTTCAGCGGAGCGCGGTTGCGCGGCGCCTTTTTTTTTTGAAAATTTGCTTTTTTCGATTTTTCGTTACTTAAAATAGTTTATCAGGCAAAAACACATATTTTAAGTGGGAAAAAAACCAATTTAGACGAAGAAAGTTAGCAAAAATCAAAATTTTAGAATTTTCCAAAAAAAAATCAATAATTTTTATCGATTTTTTTTGTAATTTTGGCGCCGCGCAATTGCGCTCCACCGAACAAACGTCTCGCATTTCGAATTTTTAGGTTTAAATGCGCTTTAATACCGATCAAAGATACTTATTTGAATTTTCGTGCGTCTGAAAATCGCAAACGCGCTCTAATAGACAGAATTATTTGAATTTTCTATTTTTGCAAACGCGCTCTATCGATAAAAACCTTTTTTTTGGGAAAGTACACAAATTCCAACGGGGATCTTATCAATTTACACGCCCTCCCA</canonical>
            <polymorphic>ATTGCTGTTTTTGCAGTTCCTCGTGTATTTTTTGTTGACTCTTCTCCTCTTCCAGCCATTTTTCGACAGTTTGGAAGCCTTCCAGGGGCGGGATGTATCTGGAAATAGGTTATTTAAAAAAGCAAAAAGGGGCGAATAGGAGTCGAACCCGCGTCCTGGAGATTGAGAGGCAGCGCTGTTGCCGCCTGCGCCACGCGGGCTCAAATGTTAGGTAGTGGGTGCGGGCGTAGAAGAGCGTGTGGGATTTCAAAGCTTTGAGAGGAGAGGGAGGGGGAGGGAGGGGCCTGGTTGGGTTGGGTTTTGAAAAGTAATAGAACCTAAAAGGGTGTAAAAGTACTTGAAAATGGGAATCCTTGTCCTCCTCCATTCAAATGTTGTTTTAAGTGGAGAATATACTAGGTCTTTTTGTGAATACACTTGTAGTACAAAAGGTTTGTTTTCCAATGATGATTGAGTAGGTTATAGCGGTTTTTATTGTTCTTTTTTCGTTTTGTAAAGGYTGCATTTTCTATTTCGAATTCAATTATTACTGTGAATGCGCTCTGTGTTCAGCGGAGCGCGGTTGCGCGGCGCCTTTTTTTTTTGAAAATTTGCTTTTTTCGATTTTTCGTTACTTAAAATAGTTTATCAGGCAAAAACACATATTTTAAGTGGGAAAAAAACCAATTTAGACGAAGAAAGTTAGCAAAAATCAAAATTTTAGAATTTTCCAAAAAAAAATCAATAATTTTTATCGATTTTTTTTGTAATTTTGGCGCCGCGCAATTGCGCTCCACCGAACAAACGTCTCGCATTTCGAATTTTTAGGTTTAAATGCGCTTTAATACCGATCAAAGATACTTATTTGAATTTTCGTGCGTCTGAAAATCGCAAACGCGCTCTAATAGACAGAATTATTTGAATTTTCTATTTTTGCAAACGCGCTCTATCGATAAAAACCTTTTTTTTGGGAAAGTACACAAATTCCAACGGGGATCTTATCAATTTACACGCCCTCCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAATGATGATTGAGTAGGTTAT</pcr_primer_p1>
		<pcr_primer_p2>AAGCGCATTTAAACCTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>381</pcr_amplicon_size>
		<canonical_amplicon>CCAATGATGATTGAGTAGGTTATAGCGGTTTTTATTGTTCTTTTTTCGTTTTGTAAAGGTTGCATTTTCTATTTCGAATTCAATTATTACTGTGAATGCGCTCTGTGTTCAGCGGAGCGCGGTTGCGCGGCGCCTTTTTTTTTTGAAAATTTGCTTTTTTCGATTTTTCGTTACTTAAAATAGTTTATCAGGCAAAAACACATATTTTAAGTGGGAAAAAAACCAATTTAGACGAAGAAAGTTAGCAAAAATCAAAATTTTAGAATTTTCCAAAAAAAAATCAATAATTTTTATCGATTTTTTTTGTAATTTTGGCGCCGCGCAATTGCGCTCCACCGAACAAACGTCTCGCATTTCGAATTTTTAGGTTTAAATGCGCTT</canonical_amplicon>
		<polymorphic_amplicon>CCAATGATGATTGAGTAGGTTATAGCGGTTTTTATTGTTCTTTTTTCGTTTTGTAAAGGYTGCATTTTCTATTTCGAATTCAATTATTACTGTGAATGCGCTCTGTGTTCAGCGGAGCGCGGTTGCGCGGCGCCTTTTTTTTTTGAAAATTTGCTTTTTTCGATTTTTCGTTACTTAAAATAGTTTATCAGGCAAAAACACATATTTTAAGTGGGAAAAAAACCAATTTAGACGAAGAAAGTTAGCAAAAATCAAAATTTTAGAATTTTCCAAAAAAAAATCAATAATTTTTATCGATTTTTTTTGTAATTTTGGCGCCGCGCAATTGCGCTCCACCGAACAAACGTCTCGCATTTCGAATTTTTAGGTTTAAATGCGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29986</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>123141</contig_pos>
        <strand></strand>
        <context>tttttcgtta[C/T]ttaaaatagt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCGCGGCGCCTTTTTTTTTTGAAAATTTGCTTTTTTCGATTTTTCGTTA</left_flank>
        <right_flank>TTAAAATAGTTTATCAGGCAAAAACACATATTTTAAGTGGGAAAAAAACC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAAAAGCAAAAAGGGGCGAATAGGAGTCGAACCCGCGTCCTGGAGATTGAGAGGCAGCGCTGTTGCCGCCTGCGCCACGCGGGCTCAAATGTTAGGTAGTGGGTGCGGGCGTAGAAGAGCGTGTGGGATTTCAAAGCTTTGAGAGGAGAGGGAGGGGGAGGGAGGGGCCTGGTTGGGTTGGGTTTTGAAAAGTAATAGAACCTAAAAGGGTGTAAAAGTACTTGAAAATGGGAATCCTTGTCCTCCTCCATTCAAATGTTGTTTTAAGTGGAGAATATACTAGGTCTTTTTGTGAATACACTTGTAGTACAAAAGGTTTGTTTTCCAATGATGATTGAGTAGGTTATAGCGGTTTTTATTGTTCTTTTTTCGTTTTGTAAAGGTTGCATTTTCTATTTCGAATTCAATTATTACTGTGAATGCGCTCTGTGTTCAGCGGAGCGCGGTTGCGCGGCGCCTTTTTTTTTTGAAAATTTGCTTTTTTCGATTTTTCGTTACTTAAAATAGTTTATCAGGCAAAAACACATATTTTAAGTGGGAAAAAAACCAATTTAGACGAAGAAAGTTAGCAAAAATCAAAATTTTAGAATTTTCCAAAAAAAAATCAATAATTTTTATCGATTTTTTTTGTAATTTTGGCGCCGCGCAATTGCGCTCCACCGAACAAACGTCTCGCATTTCGAATTTTTAGGTTTAAATGCGCTTTAATACCGATCAAAGATACTTATTTGAATTTTCGTGCGTCTGAAAATCGCAAACGCGCTCTAATAGACAGAATTATTTGAATTTTCTATTTTTGCAAACGCGCTCTATCGATAAAAACCTTTTTTTTGGGAAAGTACACAAATTCCAACGGGGATCTTATCAATTTACACGCCCTCCCAGTCAACTGAATCATCCGTTTTTCGATTTGACAAAAAAGGAAATGAGAGAGTGAGAGACGCAGAGAAAGTCAAAAACTGCTGATCCATCCTCTTGACCTACATTCTACCGCAATT</canonical>
            <polymorphic>TAAAAAAGCAAAAAGGGGCGAATAGGAGTCGAACCCGCGTCCTGGAGATTGAGAGGCAGCGCTGTTGCCGCCTGCGCCACGCGGGCTCAAATGTTAGGTAGTGGGTGCGGGCGTAGAAGAGCGTGTGGGATTTCAAAGCTTTGAGAGGAGAGGGAGGGGGAGGGAGGGGCCTGGTTGGGTTGGGTTTTGAAAAGTAATAGAACCTAAAAGGGTGTAAAAGTACTTGAAAATGGGAATCCTTGTCCTCCTCCATTCAAATGTTGTTTTAAGTGGAGAATATACTAGGTCTTTTTGTGAATACACTTGTAGTACAAAAGGTTTGTTTTCCAATGATGATTGAGTAGGTTATAGCGGTTTTTATTGTTCTTTTTTCGTTTTGTAAAGGTTGCATTTTCTATTTCGAATTCAATTATTACTGTGAATGCGCTCTGTGTTCAGCGGAGCGCGGTTGCGCGGCGCCTTTTTTTTTTGAAAATTTGCTTTTTTCGATTTTTCGTTAYTTAAAATAGTTTATCAGGCAAAAACACATATTTTAAGTGGGAAAAAAACCAATTTAGACGAAGAAAGTTAGCAAAAATCAAAATTTTAGAATTTTCCAAAAAAAAATCAATAATTTTTATCGATTTTTTTTGTAATTTTGGCGCCGCGCAATTGCGCTCCACCGAACAAACGTCTCGCATTTCGAATTTTTAGGTTTAAATGCGCTTTAATACCGATCAAAGATACTTATTTGAATTTTCGTGCGTCTGAAAATCGCAAACGCGCTCTAATAGACAGAATTATTTGAATTTTCTATTTTTGCAAACGCGCTCTATCGATAAAAACCTTTTTTTTGGGAAAGTACACAAATTCCAACGGGGATCTTATCAATTTACACGCCCTCCCAGTCAACTGAATCATCCGTTTTTCGATTTGACAAAAAAGGAAATGAGAGAGTGAGAGACGCAGAGAAAGTCAAAAACTGCTGATCCATCCTCTTGACCTACATTCTACCGCAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCGAATTCAATTATTACTGTG</pcr_primer_p1>
		<pcr_primer_p2>AAGCGCATTTAAACCTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>ATTTCGAATTCAATTATTACTGTGAATGCGCTCTGTGTTCAGCGGAGCGCGGTTGCGCGGCGCCTTTTTTTTTTGAAAATTTGCTTTTTTCGATTTTTCGTTACTTAAAATAGTTTATCAGGCAAAAACACATATTTTAAGTGGGAAAAAAACCAATTTAGACGAAGAAAGTTAGCAAAAATCAAAATTTTAGAATTTTCCAAAAAAAAATCAATAATTTTTATCGATTTTTTTTGTAATTTTGGCGCCGCGCAATTGCGCTCCACCGAACAAACGTCTCGCATTTCGAATTTTTAGGTTTAAATGCGCTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTCGAATTCAATTATTACTGTGAATGCGCTCTGTGTTCAGCGGAGCGCGGTTGCGCGGCGCCTTTTTTTTTTGAAAATTTGCTTTTTTCGATTTTTCGTTAYTTAAAATAGTTTATCAGGCAAAAACACATATTTTAAGTGGGAAAAAAACCAATTTAGACGAAGAAAGTTAGCAAAAATCAAAATTTTAGAATTTTCCAAAAAAAAATCAATAATTTTTATCGATTTTTTTTGTAATTTTGGCGCCGCGCAATTGCGCTCCACCGAACAAACGTCTCGCATTTCGAATTTTTAGGTTTAAATGCGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29987</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>123201</contig_pos>
        <strand></strand>
        <context>caatttagac[G/C]aagaaagtta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TTTATCAGGCAAAAACACATATTTTAAGTGGGAAAAAAACCAATTTAGAC</left_flank>
        <right_flank>AAGAAAGTTAGCAAAAATCAAAATTTTAGAATTTTCCAAAAAAAAATCAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTGTTGCCGCCTGCGCCACGCGGGCTCAAATGTTAGGTAGTGGGTGCGGGCGTAGAAGAGCGTGTGGGATTTCAAAGCTTTGAGAGGAGAGGGAGGGGGAGGGAGGGGCCTGGTTGGGTTGGGTTTTGAAAAGTAATAGAACCTAAAAGGGTGTAAAAGTACTTGAAAATGGGAATCCTTGTCCTCCTCCATTCAAATGTTGTTTTAAGTGGAGAATATACTAGGTCTTTTTGTGAATACACTTGTAGTACAAAAGGTTTGTTTTCCAATGATGATTGAGTAGGTTATAGCGGTTTTTATTGTTCTTTTTTCGTTTTGTAAAGGTTGCATTTTCTATTTCGAATTCAATTATTACTGTGAATGCGCTCTGTGTTCAGCGGAGCGCGGTTGCGCGGCGCCTTTTTTTTTTGAAAATTTGCTTTTTTCGATTTTTCGTTACTTAAAATAGTTTATCAGGCAAAAACACATATTTTAAGTGGGAAAAAAACCAATTTAGACGAAGAAAGTTAGCAAAAATCAAAATTTTAGAATTTTCCAAAAAAAAATCAATAATTTTTATCGATTTTTTTTGTAATTTTGGCGCCGCGCAATTGCGCTCCACCGAACAAACGTCTCGCATTTCGAATTTTTAGGTTTAAATGCGCTTTAATACCGATCAAAGATACTTATTTGAATTTTCGTGCGTCTGAAAATCGCAAACGCGCTCTAATAGACAGAATTATTTGAATTTTCTATTTTTGCAAACGCGCTCTATCGATAAAAACCTTTTTTTTGGGAAAGTACACAAATTCCAACGGGGATCTTATCAATTTACACGCCCTCCCAGTCAACTGAATCATCCGTTTTTCGATTTGACAAAAAAGGAAATGAGAGAGTGAGAGACGCAGAGAAAGTCAAAAACTGCTGATCCATCCTCTTGACCTACATTCTACCGCAATTTTTCTTGACATTTAGATGTCAAAAATTCCGAAAAACGTTTTTTTCCGCTCTTGCCCTTCC</canonical>
            <polymorphic>GCTGTTGCCGCCTGCGCCACGCGGGCTCAAATGTTAGGTAGTGGGTGCGGGCGTAGAAGAGCGTGTGGGATTTCAAAGCTTTGAGAGGAGAGGGAGGGGGAGGGAGGGGCCTGGTTGGGTTGGGTTTTGAAAAGTAATAGAACCTAAAAGGGTGTAAAAGTACTTGAAAATGGGAATCCTTGTCCTCCTCCATTCAAATGTTGTTTTAAGTGGAGAATATACTAGGTCTTTTTGTGAATACACTTGTAGTACAAAAGGTTTGTTTTCCAATGATGATTGAGTAGGTTATAGCGGTTTTTATTGTTCTTTTTTCGTTTTGTAAAGGTTGCATTTTCTATTTCGAATTCAATTATTACTGTGAATGCGCTCTGTGTTCAGCGGAGCGCGGTTGCGCGGCGCCTTTTTTTTTTGAAAATTTGCTTTTTTCGATTTTTCGTTACTTAAAATAGTTTATCAGGCAAAAACACATATTTTAAGTGGGAAAAAAACCAATTTAGACSAAGAAAGTTAGCAAAAATCAAAATTTTAGAATTTTCCAAAAAAAAATCAATAATTTTTATCGATTTTTTTTGTAATTTTGGCGCCGCGCAATTGCGCTCCACCGAACAAACGTCTCGCATTTCGAATTTTTAGGTTTAAATGCGCTTTAATACCGATCAAAGATACTTATTTGAATTTTCGTGCGTCTGAAAATCGCAAACGCGCTCTAATAGACAGAATTATTTGAATTTTCTATTTTTGCAAACGCGCTCTATCGATAAAAACCTTTTTTTTGGGAAAGTACACAAATTCCAACGGGGATCTTATCAATTTACACGCCCTCCCAGTCAACTGAATCATCCGTTTTTCGATTTGACAAAAAAGGAAATGAGAGAGTGAGAGACGCAGAGAAAGTCAAAAACTGCTGATCCATCCTCTTGACCTACATTCTACCGCAATTTTTCTTGACATTTAGATGTCAAAAATTCCGAAAAACGTTTTTTTCCGCTCTTGCCCTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCGAATTCAATTATTACTGTG</pcr_primer_p1>
		<pcr_primer_p2>AAGCGCATTTAAACCTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>ATTTCGAATTCAATTATTACTGTGAATGCGCTCTGTGTTCAGCGGAGCGCGGTTGCGCGGCGCCTTTTTTTTTTGAAAATTTGCTTTTTTCGATTTTTCGTTACTTAAAATAGTTTATCAGGCAAAAACACATATTTTAAGTGGGAAAAAAACCAATTTAGACGAAGAAAGTTAGCAAAAATCAAAATTTTAGAATTTTCCAAAAAAAAATCAATAATTTTTATCGATTTTTTTTGTAATTTTGGCGCCGCGCAATTGCGCTCCACCGAACAAACGTCTCGCATTTCGAATTTTTAGGTTTAAATGCGCTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTCGAATTCAATTATTACTGTGAATGCGCTCTGTGTTCAGCGGAGCGCGGTTGCGCGGCGCCTTTTTTTTTTGAAAATTTGCTTTTTTCGATTTTTCGTTACTTAAAATAGTTTATCAGGCAAAAACACATATTTTAAGTGGGAAAAAAACCAATTTAGACSAAGAAAGTTAGCAAAAATCAAAATTTTAGAATTTTCCAAAAAAAAATCAATAATTTTTATCGATTTTTTTTGTAATTTTGGCGCCGCGCAATTGCGCTCCACCGAACAAACGTCTCGCATTTCGAATTTTTAGGTTTAAATGCGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29988</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>123689</contig_pos>
        <strand>+</strand>
        <context>TTTTTTTCCG[C/T]TCTTGCCCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTTCTTGACATTTAGATGTCAAAAATTCCGAAAAACGTTTTTTTCCG</left_flank>
        <right_flank>TCTTGCCCTTCCCTTGCCCATTACTTGCCCATCCCCATTTCTGCCACACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAATTTAGACGAAGAAAGTTAGCAAAAATCAAAATTTTAGAATTTTCCAAAAAAAAATCAATAATTTTTATCGATTTTTTTTGTAATTTTGGCGCCGCGCAATTGCGCTCCACCGAACAAACGTCTCGCATTTCGAATTTTTAGGTTTAAATGCGCTTTAATACCGATCAAAGATACTTATTTGAATTTTCGTGCGTCTGAAAATCGCAAACGCGCTCTAATAGACAGAATTATTTGAATTTTCTATTTTTGCAAACGCGCTCTATCGATAAAAACCTTTTTTTTGGGAAAGTACACAAATTCCAACGGGGATCTTATCAATTTACACGCCCTCCCAGTCAACTGAATCATCCGTTTTTCGATTTGACAAAAAAGGAAATGAGAGAGTGAGAGACGCAGAGAAAGTCAAAAACTGCTGATCCATCCTCTTGACCTACATTCTACCGCAATTTTTCTTGACATTTAGATGTCAAAAATTCCGAAAAACGTTTTTTTCCGCTCTTGCCCTTCCCTTGCCCATTACTTGCCCATCCCCATTTCTGCCACACCTACACCCATATCATATCTAATCAATAGGCTTTTTATATCCCTCTATTTCTTTCTCTGCGTCTCTCCTCCTCTCTCCAGAATCCAGAATGCGTGATCTGATCTGCATAACAGCTTCTTCTTATTCTTTTCCCCATCTTCTTGCCTCATTACATTCATCCCACCCCTAAATGACGCCCTTCTGATAACTTTTGGCATATTTCCCCAAAATGACTAATGTTTGGGATTTATTGGGACTTTTTACCCTAAATTTTCTCCCCCGAAAAATTGCCAAAAATGGCAGTTTTTTCTAGATTTTTCAAATTCTAATGGCGGTTGAATCAAATAAAATTTGAAGAGCATTAATGGGTTTTTTGAGGAGCACAATTTCTCACTCAATTAATCATTCCGGCTATCCGGAGCTAACCAGAGGAGCAGTTGGCGTTTTTTAAGGTTTGAAAAAGAAGCTATAAA</canonical>
            <polymorphic>CCAATTTAGACGAAGAAAGTTAGCAAAAATCAAAATTTTAGAATTTTCCAAAAAAAAATCAATAATTTTTATCGATTTTTTTTGTAATTTTGGCGCCGCGCAATTGCGCTCCACCGAACAAACGTCTCGCATTTCGAATTTTTAGGTTTAAATGCGCTTTAATACCGATCAAAGATACTTATTTGAATTTTCGTGCGTCTGAAAATCGCAAACGCGCTCTAATAGACAGAATTATTTGAATTTTCTATTTTTGCAAACGCGCTCTATCGATAAAAACCTTTTTTTTGGGAAAGTACACAAATTCCAACGGGGATCTTATCAATTTACACGCCCTCCCAGTCAACTGAATCATCCGTTTTTCGATTTGACAAAAAAGGAAATGAGAGAGTGAGAGACGCAGAGAAAGTCAAAAACTGCTGATCCATCCTCTTGACCTACATTCTACCGCAATTTTTCTTGACATTTAGATGTCAAAAATTCCGAAAAACGTTTTTTTCCGYTCTTGCCCTTCCCTTGCCCATTACTTGCCCATCCCCATTTCTGCCACACCTACACCCATATCATATCTAATCAATAGGCTTTTTATATCCCTCTATTTCTTTCTCTGCGTCTCTCCTCCTCTCTCCAGAATCCAGAATGCGTGATCTGATCTGCATAACAGCTTCTTCTTATTCTTTTCCCCATCTTCTTGCCTCATTACATTCATCCCACCCCTAAATGACGCCCTTCTGATAACTTTTGGCATATTTCCCCAAAATGACTAATGTTTGGGATTTATTGGGACTTTTTACCCTAAATTTTCTCCCCCGAAAAATTGCCAAAAATGGCAGTTTTTTCTAGATTTTTCAAATTCTAATGGCGGTTGAATCAAATAAAATTTGAAGAGCATTAATGGGTTTTTTGAGGAGCACAATTTCTCACTCAATTAATCATTCCGGCTATCCGGAGCTAACCAGAGGAGCAGTTGGCGTTTTTTAAGGTTTGAAAAAGAAGCTATAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>361 349 142 96 52</canonical_bands>
                <polymorphic_bands>413 349 142 96</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCTCTTGACCTACATTCTACC</pcr_primer_p1>
		<pcr_primer_p2>TAAGAAGAAGCTGTTATGCAGAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATCCTCTTGACCTACATTCTACCGCAATTTTTCTTGACATTTAGATGTCAAAAATTCCGAAAAACGTTTTTTTCCGCTCTTGCCCTTCCCTTGCCCATTACTTGCCCATCCCCATTTCTGCCACACCTACACCCATATCATATCTAATCAATAGGCTTTTTATATCCCTCTATTTCTTTCTCTGCGTCTCTCCTCCTCTCTCCAGAATCCAGAATGCGTGATCTGATCTGCATAACAGCTTCTTCTTA</canonical_amplicon>
		<polymorphic_amplicon>ATCCTCTTGACCTACATTCTACCGCAATTTTTCTTGACATTTAGATGTCAAAAATTCCGAAAAACGTTTTTTTCCGYTCTTGCCCTTCCCTTGCCCATTACTTGCCCATCCCCATTTCTGCCACACCTACACCCATATCATATCTAATCAATAGGCTTTTTATATCCCTCTATTTCTTTCTCTGCGTCTCTCCTCCTCTCTCCAGAATCCAGAATGCGTGATCTGATCTGCATAACAGCTTCTTCTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29989</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>124013</contig_pos>
        <strand>+</strand>
        <context>ATTGCCAAAA[A/G]TGGCAGTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTATTGGGACTTTTTACCCTAAATTTTCTCCCCCGAAAAATTGCCAAAA</left_flank>
        <right_flank>TGGCAGTTTTTTCTAGATTTTTCAAATTCTAATGGCGGTTGAATCAAATA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACACGCCCTCCCAGTCAACTGAATCATCCGTTTTTCGATTTGACAAAAAAGGAAATGAGAGAGTGAGAGACGCAGAGAAAGTCAAAAACTGCTGATCCATCCTCTTGACCTACATTCTACCGCAATTTTTCTTGACATTTAGATGTCAAAAATTCCGAAAAACGTTTTTTTCCGCTCTTGCCCTTCCCTTGCCCATTACTTGCCCATCCCCATTTCTGCCACACCTACACCCATATCATATCTAATCAATAGGCTTTTTATATCCCTCTATTTCTTTCTCTGCGTCTCTCCTCCTCTCTCCAGAATCCAGAATGCGTGATCTGATCTGCATAACAGCTTCTTCTTATTCTTTTCCCCATCTTCTTGCCTCATTACATTCATCCCACCCCTAAATGACGCCCTTCTGATAACTTTTGGCATATTTCCCCAAAATGACTAATGTTTGGGATTTATTGGGACTTTTTACCCTAAATTTTCTCCCCCGAAAAATTGCCAAAAATGGCAGTTTTTTCTAGATTTTTCAAATTCTAATGGCGGTTGAATCAAATAAAATTTGAAGAGCATTAATGGGTTTTTTGAGGAGCACAATTTCTCACTCAATTAATCATTCCGGCTATCCGGAGCTAACCAGAGGAGCAGTTGGCGTTTTTTAAGGTTTGAAAAAGAAGCTATAAATATTCCAAGAAATGGTTTTTTTTCGAATTTTTAGTGCAATTTTTAGTGCAAAAATCTCCCGTTCACTTTGAGCTCAATTATCTCGGCTCCCATTACAGATATCGAAAAGCTGTTAACTGATAAAATGTTGGTGATATTATGATAAACATTTTATCAGTTGACAGATAGTTGATATCTTTTCTAGGAACCAAGATGATTGAGCTCGAAGTATGCGACCTCAACAGACACCTTGCGTGAGTGGTGGAATCCTAGCTGACGCTTGCAACCGCGTAGCTCAACAGGGCGCAAAGAGAACATGTAATTTCTTATATCATTTTGTAGAAC</canonical>
            <polymorphic>TACACGCCCTCCCAGTCAACTGAATCATCCGTTTTTCGATTTGACAAAAAAGGAAATGAGAGAGTGAGAGACGCAGAGAAAGTCAAAAACTGCTGATCCATCCTCTTGACCTACATTCTACCGCAATTTTTCTTGACATTTAGATGTCAAAAATTCCGAAAAACGTTTTTTTCCGCTCTTGCCCTTCCCTTGCCCATTACTTGCCCATCCCCATTTCTGCCACACCTACACCCATATCATATCTAATCAATAGGCTTTTTATATCCCTCTATTTCTTTCTCTGCGTCTCTCCTCCTCTCTCCAGAATCCAGAATGCGTGATCTGATCTGCATAACAGCTTCTTCTTATTCTTTTCCCCATCTTCTTGCCTCATTACATTCATCCCACCCCTAAATGACGCCCTTCTGATAACTTTTGGCATATTTCCCCAAAATGACTAATGTTTGGGATTTATTGGGACTTTTTACCCTAAATTTTCTCCCCCGAAAAATTGCCAAAARTGGCAGTTTTTTCTAGATTTTTCAAATTCTAATGGCGGTTGAATCAAATAAAATTTGAAGAGCATTAATGGGTTTTTTGAGGAGCACAATTTCTCACTCAATTAATCATTCCGGCTATCCGGAGCTAACCAGAGGAGCAGTTGGCGTTTTTTAAGGTTTGAAAAAGAAGCTATAAATATTCCAAGAAATGGTTTTTTTTCGAATTTTTAGTGCAATTTTTAGTGCAAAAATCTCCCGTTCACTTTGAGCTCAATTATCTCGGCTCCCATTACAGATATCGAAAAGCTGTTAACTGATAAAATGTTGGTGATATTATGATAAACATTTTATCAGTTGACAGATAGTTGATATCTTTTCTAGGAACCAAGATGATTGAGCTCGAAGTATGCGACCTCAACAGACACCTTGCGTGAGTGGTGGAATCCTAGCTGACGCTTGCAACCGCGTAGCTCAACAGGGCGCAAAGAGAACATGTAATTTCTTATATCATTTTGTAGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTGCATAACAGCTTCTTCTTA</pcr_primer_p1>
		<pcr_primer_p2>ACCCATTAATGCTCTTCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCTGCATAACAGCTTCTTCTTATTCTTTTCCCCATCTTCTTGCCTCATTACATTCATCCCACCCCTAAATGACGCCCTTCTGATAACTTTTGGCATATTTCCCCAAAATGACTAATGTTTGGGATTTATTGGGACTTTTTACCCTAAATTTTCTCCCCCGAAAAATTGCCAAAAATGGCAGTTTTTTCTAGATTTTTCAAATTCTAATGGCGGTTGAATCAAATAAAATTTGAAGAGCATTAATGGGT</canonical_amplicon>
		<polymorphic_amplicon>ATCTGCATAACAGCTTCTTCTTATTCTTTTCCCCATCTTCTTGCCTCATTACATTCATCCCACCCCTAAATGACGCCCTTCTGATAACTTTTGGCATATTTCCCCAAAATGACTAATGTTTGGGATTTATTGGGACTTTTTACCCTAAATTTTCTCCCCCGAAAAATTGCCAAAARTGGCAGTTTTTTCTAGATTTTTCAAATTCTAATGGCGGTTGAATCAAATAAAATTTGAAGAGCATTAATGGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29990</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>124130</contig_pos>
        <strand></strand>
        <context>CATTCCGGCT[A/G]TMCGGAGCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGGGTTTTTTGAGGAGCACAATTTCTCACTCAATTAATCATTCCGGCT</left_flank>
        <right_flank>TCCGGAGCTAACCAGAGGAGCAGTTGGCGTTTTTTAAGGTTTGAAAAAGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACCGCAATTTTTCTTGACATTTAGATGTCAAAAATTCCGAAAAACGTTTTTTTCCGCTCTTGCCCTTCCCTTGCCCATTACTTGCCCATCCCCATTTCTGCCACACCTACACCCATATCATATCTAATCAATAGGCTTTTTATATCCCTCTATTTCTTTCTCTGCGTCTCTCCTCCTCTCTCCAGAATCCAGAATGCGTGATCTGATCTGCATAACAGCTTCTTCTTATTCTTTTCCCCATCTTCTTGCCTCATTACATTCATCCCACCCCTAAATGACGCCCTTCTGATAACTTTTGGCATATTTCCCCAAAATGACTAATGTTTGGGATTTATTGGGACTTTTTACCCTAAATTTTCTCCCCCGAAAAATTGCCAAAAATGGCAGTTTTTTCTAGATTTTTCAAATTCTAATGGCGGTTGAATCAAATAAAATTTGAAGAGCATTAATGGGTTTTTTGAGGAGCACAATTTCTCACTCAATTAATCATTCCGGCTATCCGGAGCTAACCAGAGGAGCAGTTGGCGTTTTTTAAGGTTTGAAAAAGAAGCTATAAATATTCCAAGAAATGGTTTTTTTTCGAATTTTTAGTGCAATTTTTAGTGCAAAAATCTCCCGTTCACTTTGAGCTCAATTATCTCGGCTCCCATTACAGATATCGAAAAGCTGTTAACTGATAAAATGTTGGTGATATTATGATAAACATTTTATCAGTTGACAGATAGTTGATATCTTTTCTAGGAACCAAGATGATTGAGCTCGAAGTATGCGACCTCAACAGACACCTTGCGTGAGTGGTGGAATCCTAGCTGACGCTTGCAACCGCGTAGCTCAACAGGGCGCAAAGAGAACATGTAATTTCTTATATCATTTTGTAGAACATTTTAAGACCTACATTTTCCATTTTGATGTTTTTGAAAATGTTGATTTTGAAGCAAGCTATAAGTTCTCAACTAACTGAAGCTCGAAAGTCGTAGTAATTGGCTAATGACAAGGTT</canonical>
            <polymorphic>CTACCGCAATTTTTCTTGACATTTAGATGTCAAAAATTCCGAAAAACGTTTTTTTCCGCTCTTGCCCTTCCCTTGCCCATTACTTGCCCATCCCCATTTCTGCCACACCTACACCCATATCATATCTAATCAATAGGCTTTTTATATCCCTCTATTTCTTTCTCTGCGTCTCTCCTCCTCTCTCCAGAATCCAGAATGCGTGATCTGATCTGCATAACAGCTTCTTCTTATTCTTTTCCCCATCTTCTTGCCTCATTACATTCATCCCACCCCTAAATGACGCCCTTCTGATAACTTTTGGCATATTTCCCCAAAATGACTAATGTTTGGGATTTATTGGGACTTTTTACCCTAAATTTTCTCCCCCGAAAAATTGCCAAAAATGGCAGTTTTTTCTAGATTTTTCAAATTCTAATGGCGGTTGAATCAAATAAAATTTGAAGAGCATTAATGGGTTTTTTGAGGAGCACAATTTCTCACTCAATTAATCATTCCGGCTRTCCGGAGCTAACCAGAGGAGCAGTTGGCGTTTTTTAAGGTTTGAAAAAGAAGCTATAAATATTCCAAGAAATGGTTTTTTTTCGAATTTTTAGTGCAATTTTTAGTGCAAAAATCTCCCGTTCACTTTGAGCTCAATTATCTCGGCTCCCATTACAGATATCGAAAAGCTGTTAACTGATAAAATGTTGGTGATATTATGATAAACATTTTATCAGTTGACAGATAGTTGATATCTTTTCTAGGAACCAAGATGATTGAGCTCGAAGTATGCGACCTCAACAGACACCTTGCGTGAGTGGTGGAATCCTAGCTGACGCTTGCAACCGCGTAGCTCAACAGGGCGCAAAGAGAACATGTAATTTCTTATATCATTTTGTAGAACATTTTAAGACCTACATTTTCCATTTTGATGTTTTTGAAAATGTTGATTTTGAAGCAAGCTATAAGTTCTCAACTAACTGAAGCTCGAAAGTCGTAGTAATTGGCTAATGACAAGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGACTAATGTTTGGGATTTA</pcr_primer_p1>
		<pcr_primer_p2>TTTATAGCTTCTTTTTCAAACCTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAATGACTAATGTTTGGGATTTATTGGGACTTTTTACCCTAAATTTTCTCCCCCGAAAAATTGCCAAAAATGGCAGTTTTTTCTAGATTTTTCAAATTCTAATGGCGGTTGAATCAAATAAAATTTGAAGAGCATTAATGGGTTTTTTGAGGAGCACAATTTCTCACTCAATTAATCATTCCGGCTATCCGGAGCTAACCAGAGGAGCAGTTGGCGTTTTTTAAGGTTTGAAAAAGAAGCTATAAA</canonical_amplicon>
		<polymorphic_amplicon>AAATGACTAATGTTTGGGATTTATTGGGACTTTTTACCCTAAATTTTCTCCCCCGAAAAATTGCCAAAAATGGCAGTTTTTTCTAGATTTTTCAAATTCTAATGGCGGTTGAATCAAATAAAATTTGAAGAGCATTAATGGGTTTTTTGAGGAGCACAATTTCTCACTCAATTAATCATTCCGGCTRTCCGGAGCTAACCAGAGGAGCAGTTGGCGTTTTTTAAGGTTTGAAAAAGAAGCTATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29991</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>124132</contig_pos>
        <strand></strand>
        <context>TTCCGGCTRT[C/A]CGGAGCTAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TGGGTTTTTTGAGGAGCACAATTTCTCACTCAATTAATCATTCCGGCTAT</left_flank>
        <right_flank>CGGAGCTAACCAGAGGAGCAGTTGGCGTTTTTTAAGGTTTGAAAAAGAAG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCGCAATTTTTCTTGACATTTAGATGTCAAAAATTCCGAAAAACGTTTTTTTCCGCTCTTGCCCTTCCCTTGCCCATTACTTGCCCATCCCCATTTCTGCCACACCTACACCCATATCATATCTAATCAATAGGCTTTTTATATCCCTCTATTTCTTTCTCTGCGTCTCTCCTCCTCTCTCCAGAATCCAGAATGCGTGATCTGATCTGCATAACAGCTTCTTCTTATTCTTTTCCCCATCTTCTTGCCTCATTACATTCATCCCACCCCTAAATGACGCCCTTCTGATAACTTTTGGCATATTTCCCCAAAATGACTAATGTTTGGGATTTATTGGGACTTTTTACCCTAAATTTTCTCCCCCGAAAAATTGCCAAAAATGGCAGTTTTTTCTAGATTTTTCAAATTCTAATGGCGGTTGAATCAAATAAAATTTGAAGAGCATTAATGGGTTTTTTGAGGAGCACAATTTCTCACTCAATTAATCATTCCGGCTATCCGGAGCTAACCAGAGGAGCAGTTGGCGTTTTTTAAGGTTTGAAAAAGAAGCTATAAATATTCCAAGAAATGGTTTTTTTTCGAATTTTTAGTGCAATTTTTAGTGCAAAAATCTCCCGTTCACTTTGAGCTCAATTATCTCGGCTCCCATTACAGATATCGAAAAGCTGTTAACTGATAAAATGTTGGTGATATTATGATAAACATTTTATCAGTTGACAGATAGTTGATATCTTTTCTAGGAACCAAGATGATTGAGCTCGAAGTATGCGACCTCAACAGACACCTTGCGTGAGTGGTGGAATCCTAGCTGACGCTTGCAACCGCGTAGCTCAACAGGGCGCAAAGAGAACATGTAATTTCTTATATCATTTTGTAGAACATTTTAAGACCTACATTTTCCATTTTGATGTTTTTGAAAATGTTGATTTTGAAGCAAGCTATAAGTTCTCAACTAACTGAAGCTCGAAAGTCGTAGTAATTGGCTAATGACAAGGTTCT</canonical>
            <polymorphic>ACCGCAATTTTTCTTGACATTTAGATGTCAAAAATTCCGAAAAACGTTTTTTTCCGCTCTTGCCCTTCCCTTGCCCATTACTTGCCCATCCCCATTTCTGCCACACCTACACCCATATCATATCTAATCAATAGGCTTTTTATATCCCTCTATTTCTTTCTCTGCGTCTCTCCTCCTCTCTCCAGAATCCAGAATGCGTGATCTGATCTGCATAACAGCTTCTTCTTATTCTTTTCCCCATCTTCTTGCCTCATTACATTCATCCCACCCCTAAATGACGCCCTTCTGATAACTTTTGGCATATTTCCCCAAAATGACTAATGTTTGGGATTTATTGGGACTTTTTACCCTAAATTTTCTCCCCCGAAAAATTGCCAAAAATGGCAGTTTTTTCTAGATTTTTCAAATTCTAATGGCGGTTGAATCAAATAAAATTTGAAGAGCATTAATGGGTTTTTTGAGGAGCACAATTTCTCACTCAATTAATCATTCCGGCTATMCGGAGCTAACCAGAGGAGCAGTTGGCGTTTTTTAAGGTTTGAAAAAGAAGCTATAAATATTCCAAGAAATGGTTTTTTTTCGAATTTTTAGTGCAATTTTTAGTGCAAAAATCTCCCGTTCACTTTGAGCTCAATTATCTCGGCTCCCATTACAGATATCGAAAAGCTGTTAACTGATAAAATGTTGGTGATATTATGATAAACATTTTATCAGTTGACAGATAGTTGATATCTTTTCTAGGAACCAAGATGATTGAGCTCGAAGTATGCGACCTCAACAGACACCTTGCGTGAGTGGTGGAATCCTAGCTGACGCTTGCAACCGCGTAGCTCAACAGGGCGCAAAGAGAACATGTAATTTCTTATATCATTTTGTAGAACATTTTAAGACCTACATTTTCCATTTTGATGTTTTTGAAAATGTTGATTTTGAAGCAAGCTATAAGTTCTCAACTAACTGAAGCTCGAAAGTCGTAGTAATTGGCTAATGACAAGGTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCCGGA</site>
                <isoschizomers>
                    <enzyme>AccIII</enzyme>
                    <enzyme>BseAI</enzyme>
                    <enzyme>BsiMI</enzyme>
                    <enzyme>Bsp13I</enzyme>
                    <enzyme>BspEI</enzyme>
                    <enzyme>BspMII</enzyme>
                    <enzyme>Kpn2I</enzyme>
                    <enzyme>MroI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 492 8</canonical_bands>
                <polymorphic_bands>508 492</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>500 205 169 106 13 7</canonical_bands>
                <polymorphic_bands>606 205 169 13 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGACTAATGTTTGGGATTTA</pcr_primer_p1>
		<pcr_primer_p2>TTTATAGCTTCTTTTTCAAACCTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAATGACTAATGTTTGGGATTTATTGGGACTTTTTACCCTAAATTTTCTCCCCCGAAAAATTGCCAAAAATGGCAGTTTTTTCTAGATTTTTCAAATTCTAATGGCGGTTGAATCAAATAAAATTTGAAGAGCATTAATGGGTTTTTTGAGGAGCACAATTTCTCACTCAATTAATCATTCCGGCTATCCGGAGCTAACCAGAGGAGCAGTTGGCGTTTTTTAAGGTTTGAAAAAGAAGCTATAAA</canonical_amplicon>
		<polymorphic_amplicon>AAATGACTAATGTTTGGGATTTATTGGGACTTTTTACCCTAAATTTTCTCCCCCGAAAAATTGCCAAAAATGGCAGTTTTTTCTAGATTTTTCAAATTCTAATGGCGGTTGAATCAAATAAAATTTGAAGAGCATTAATGGGTTTTTTGAGGAGCACAATTTCTCACTCAATTAATCATTCCGGCTATMCGGAGCTAACCAGAGGAGCAGTTGGCGTTTTTTAAGGTTTGAAAAAGAAGCTATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29992</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>126456</contig_pos>
        <strand></strand>
        <context>ggtaaactaa[A/T]aaaaagtgtg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGCTTAATTATCTTGGTTCCTATAAGAGGTATCACAAATTGGTAAACTAA</left_flank>
        <right_flank>AAAAAGTGTGGATTTTTATACTTTATATTTTTTCAGTTAACTTTTTTCTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCCTTTTTTCTCTCTTCTTCTCTCTATACATCCCTTTCTCTTCTTCTAATACCGTCGGTCCAATGTTATGTATGTGTCTTCTGGGGTGGCTTCTCATATCTCGTTTCAAATCATCATCTTCTTCTTCTTCACCACTACCTCTTCTTCTTCTCTTTTCTCGGGAGAGGCGATTCTCGTACGTATTACATGTAATTATGATTCATTTATCTCCCATTATTATTATTCCAATCAATTCGAATACTACCCGCGCATGTTTTAGTTAGCCCAATTTATCTAGGTTCCTGTAAGAGGTATCAAGAAGTGGTCAACTGATAAAATGCTGCTGATTTTATGATAAACAATTTGTTAGTTAACAACTTCTTTATATCTTTCAAAGAAACCGAGATAAATTGGGTTGAACATGAAAGCGCGCGCAAATATGTGCGCAATGCCTAGGCTCTAACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGGTATCACAAATTGGTAAACTAAAAAAAAGTGTGGATTTTTATACTTTATATTTTTTCAGTTAACTTTTTTCTGGTAGCTGTCATAGAAAACGAGATAAATTGAGGAAAACTTTGCAACTATATAAGGGAATCCTATTTTTGGTTTATTTCCCTTTAAACTTGACATTTTTGAATGATCAATATTTTTGAATGATCGAAATTGCAGAATGAGCATTTTTGTAGCTCAAAAATTAGATGTTTCATTATGACCACTTTTAAGAACCGTTCATTTTTCTTGCAGCAATCAACATGCCTCGGTGGCTCCTACTTACAAGATCACTGCACATTTGGACCCATAATTTTCTTCAAACTTTATATTTTCTAATGTTTTAAATTGGAAAATGTAGATCTTGAAATTCTCTACAAACTAATATATAACACATTGTGATTACATAACTCCTAACGTTGATTATCAATGGTTGATAAGAACCTTGTAATTAGCCAATTACTACGACTTTTGAGCTTCAGTTAGTTGAGAACTTAT</canonical>
            <polymorphic>CTCCCTTTTTTCTCTCTTCTTCTCTCTATACATCCCTTTCTCTTCTTCTAATACCGTCGGTCCAATGTTATGTATGTGTCTTCTGGGGTGGCTTCTCATATCTCGTTTCAAATCATCATCTTCTTCTTCTTCACCACTACCTCTTCTTCTTCTCTTTTCTCGGGAGAGGCGATTCTCGTACGTATTACATGTAATTATGATTCATTTATCTCCCATTATTATTATTCCAATCAATTCGAATACTACCCGCGCATGTTTTAGTTAGCCCAATTTATCTAGGTTCCTGTAAGAGGTATCAAGAAGTGGTCAACTGATAAAATGCTGCTGATTTTATGATAAACAATTTGTTAGTTAACAACTTCTTTATATCTTTCAAAGAAACCGAGATAAATTGGGTTGAACATGAAAGCGCGCGCAAATATGTGCGCAATGCCTAGGCTCTAACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGGTATCACAAATTGGTAAACTAAWAAAAAGTGTGGATTTTTATACTTTATATTTTTTCAGTTAACTTTTTTCTGGTAGCTGTCATAGAAAACGAGATAAATTGAGGAAAACTTTGCAACTATATAAGGGAATCCTATTTTTGGTTTATTTCCCTTTAAACTTGACATTTTTGAATGATCAATATTTTTGAATGATCGAAATTGCAGAATGAGCATTTTTGTAGCTCAAAAATTAGATGTTTCATTATGACCACTTTTAAGAACCGTTCATTTTTCTTGCAGCAATCAACATGCCTCGGTGGCTCCTACTTACAAGATCACTGCACATTTGGACCCATAATTTTCTTCAAACTTTATATTTTCTAATGTTTTAAATTGGAAAATGTAGATCTTGAAATTCTCTACAAACTAATATATAACACATTGTGATTACATAACTCCTAACGTTGATTATCAATGGTTGATAAGAACCTTGTAATTAGCCAATTACTACGACTTTTGAGCTTCAGTTAGTTGAGAACTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAATCAATTCGAATACTACC</pcr_primer_p1>
		<pcr_primer_p2>ATTCCCTTATATAGTTGCAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>383</pcr_amplicon_size>
		<canonical_amplicon>TCCAATCAATTCGAATACTACCCGCGCATGTTTTAGTTAGCCCAATTTATCTAGGTTCCTGTAAGAGGTATCAAGAAGTGGTCAACTGATAAAATGCTGCTGATTTTATGATAAACAATTTGTTAGTTAACAACTTCTTTATATCTTTCAAAGAAACCGAGATAAATTGGGTTGAACATGAAAGCGCGCGCAAATATGTGCGCAATGCCTAGGCTCTAACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGGTATCACAAATTGGTAAACTAAAAAAAAGTGTGGATTTTTATACTTTATATTTTTTCAGTTAACTTTTTTCTGGTAGCTGTCATAGAAAACGAGATAAATTGAGGAAAACTTTGCAACTATATAAGGGAAT</canonical_amplicon>
		<polymorphic_amplicon>TCCAATCAATTCGAATACTACCCGCGCATGTTTTAGTTAGCCCAATTTATCTAGGTTCCTGTAAGAGGTATCAAGAAGTGGTCAACTGATAAAATGCTGCTGATTTTATGATAAACAATTTGTTAGTTAACAACTTCTTTATATCTTTCAAAGAAACCGAGATAAATTGGGTTGAACATGAAAGCGCGCGCAAATATGTGCGCAATGCCTAGGCTCTAACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGGTATCACAAATTGGTAAACTAAWAAAAAGTGTGGATTTTTATACTTTATATTTTTTCAGTTAACTTTTTTCTGGTAGCTGTCATAGAAAACGAGATAAATTGAGGAAAACTTTGCAACTATATAAGGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29993</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>128533</contig_pos>
        <strand>+</strand>
        <context>aggcttggag[C/G]agataAACGG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGAACTTCATTTTTGTAGTTGACAACTTTTTGGGGAAATTAGGCTTGGAG</left_flank>
        <right_flank>AGATAAACGGTCTAAATTCTAACCTATTTCAGATCAGCATTCAACACATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTTCNTAGAAAAGATATCAACTATCTGTCAACTGATAAAATGTTTATCATCCCCCAAAAATGCAAACTTGATTATAACTCGCTTCAAAGAAGAGCTAGAAGCTTGATGTTTGCACCAAATTGTTTCAAATTTAACTGCAAAAAGTTAGAATCTTGTTTCAACCGATTCAAATTAAAATTTCAGCCAGAACCCAATGACGATGAAAAAGTGGCAATTTCGTGTCTCTACGGATCCAACTTGGACCATCTTATGAAAGCAACAGAAGCAGTGAAGAATGCAAGTCTAGTAACGTCATCGGTGAGATTTTAAATACTTTCTGGTTTTCAATAGAGCGCGTTTGTCAAAAAACCTACTGTTTTAACGGAAATGGTCAACTTTGGAGTCCTACAAAAGGGACCCAAGCTTTTTGGATGTGTCTGAAAATTTCAGAATATACTAAACAAAAATAGAACTTCATTTTTGTAGTTGACAACTTTTTGGGGAAATTAGGCTTGGAGGAGATAAACGGTCTAAATTCTAACCTATTTCAGATCAGCATTCAACACATGGAGTTTCCAGATGGTGGACTTCCAGAATTCTCAAAAATCGCTCCACAACTCCAAAGTTTGGATATTCGAGAATGTTCGGGACAGGACGAGTTGCAAATCGGGGATGACAGTTTTAAGGGGCTAGAGCAGACGCTGAGGAATCTCACCATTCATGCATGTAATCTTATGGTAAGTGATTTTGCTTTGTATTTTGAGCTCAATTATCTCCGTTTCTATAAGAGATATCAAAACGTAGTCAACTGAGAAAATGTAGGCGATAATAAGATAAACATATTCTTAGTTAACAACTTTTTGATATCTGCCACTGGAAATGTGATACAAAGGCTCAAAGTTGGCGCACGGGTGGGGGGTGGGAGGTTCAGCTGGTAGCGGCGCGGCACCTCCAACAGTGGGCGCCACCTTGTACTTGCACACTTTGAGCTCAATTATCTAGGTTGCTATAAGAGATAT</canonical>
            <polymorphic>TGGTTCNTAGAAAAGATATCAACTATCTGTCAACTGATAAAATGTTTATCATCCCCCAAAAATGCAAACTTGATTATAACTCGCTTCAAAGAAGAGCTAGAAGCTTGATGTTTGCACCAAATTGTTTCAAATTTAACTGCAAAAAGTTAGAATCTTGTTTCAACCGATTCAAATTAAAATTTCAGCCAGAACCCAATGACGATGAAAAAGTGGCAATTTCGTGTCTCTACGGATCCAACTTGGACCATCTTATGAAAGCAACAGAAGCAGTGAAGAATGCAAGTCTAGTAACGTCATCGGTGAGATTTTAAATACTTTCTGGTTTTCAATAGAGCGCGTTTGTCAAAAAACCTACTGTTTTAACGGAAATGGTCAACTTTGGAGTCCTACAAAAGGGACCCAAGCTTTTTGGATGTGTCTGAAAATTTCAGAATATACTAAACAAAAATAGAACTTCATTTTTGTAGTTGACAACTTTTTGGGGAAATTAGGCTTGGAGSAGATAAACGGTCTAAATTCTAACCTATTTCAGATCAGCATTCAACACATGGAGTTTCCAGATGGTGGACTTCCAGAATTCTCAAAAATCGCTCCACAACTCCAAAGTTTGGATATTCGAGAATGTTCGGGACAGGACGAGTTGCAAATCGGGGATGACAGTTTTAAGGGGCTAGAGCAGACGCTGAGGAATCTCACCATTCATGCATGTAATCTTATGGTAAGTGATTTTGCTTTGTATTTTGAGCTCAATTATCTCCGTTTCTATAAGAGATATCAAAACGTAGTCAACTGAGAAAATGTAGGCGATAATAAGATAAACATATTCTTAGTTAACAACTTTTTGATATCTGCCACTGGAAATGTGATACAAAGGCTCAAAGTTGGCGCACGGGTGGGGGGTGGGAGGTTCAGCTGGTAGCGGCGCGGCACCTCCAACAGTGGGCGCCACCTTGTACTTGCACACTTTGAGCTCAATTATCTAGGTTGCTATAAGAGATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTTTCTGGTTTTCAATAGAGC</pcr_primer_p1>
		<pcr_primer_p2>CATCTGGAAACTCCATGTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TACTTTCTGGTTTTCAATAGAGCGCGTTTGTCAAAAAACCTACTGTTTTAACGGAAATGGTCAACTTTGGAGTCCTACAAAAGGGACCCAAGCTTTTTGGATGTGTCTGAAAATTTCAGAATATACTAAACAAAAATAGAACTTCATTTTTGTAGTTGACAACTTTTTGGGGAAATTAGGCTTGGAGGAGATAAACGGTCTAAATTCTAACCTATTTCAGATCAGCATTCAACACATGGAGTTTCCAGATG</canonical_amplicon>
		<polymorphic_amplicon>TACTTTCTGGTTTTCAATAGAGCGCGTTTGTCAAAAAACCTACTGTTTTAACGGAAATGGTCAACTTTGGAGTCCTACAAAAGGGACCCAAGCTTTTTGGATGTGTCTGAAAATTTCAGAATATACTAAACAAAAATAGAACTTCATTTTTGTAGTTGACAACTTTTTGGGGAAATTAGGCTTGGAGSAGATAAACGGTCTAAATTCTAACCTATTTCAGATCAGCATTCAACACATGGAGTTTCCAGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29994</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>128846</contig_pos>
        <strand></strand>
        <context>ggcgataata[A/T]gataaacata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTATAAGAGATATCAAAACGTAGTCAACTGAGAAAATGTAGGCGATAATA</left_flank>
        <right_flank>GATAAACATATTCTTAGTTAACAACTTTTTGATATCTGCCACTGGAAATG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTCTGGTTTTCAATAGAGCGCGTTTGTCAAAAAACCTACTGTTTTAACGGAAATGGTCAACTTTGGAGTCCTACAAAAGGGACCCAAGCTTTTTGGATGTGTCTGAAAATTTCAGAATATACTAAACAAAAATAGAACTTCATTTTTGTAGTTGACAACTTTTTGGGGAAATTAGGCTTGGAGGAGATAAACGGTCTAAATTCTAACCTATTTCAGATCAGCATTCAACACATGGAGTTTCCAGATGGTGGACTTCCAGAATTCTCAAAAATCGCTCCACAACTCCAAAGTTTGGATATTCGAGAATGTTCGGGACAGGACGAGTTGCAAATCGGGGATGACAGTTTTAAGGGGCTAGAGCAGACGCTGAGGAATCTCACCATTCATGCATGTAATCTTATGGTAAGTGATTTTGCTTTGTATTTTGAGCTCAATTATCTCCGTTTCTATAAGAGATATCAAAACGTAGTCAACTGAGAAAATGTAGGCGATAATAAGATAAACATATTCTTAGTTAACAACTTTTTGATATCTGCCACTGGAAATGTGATACAAAGGCTCAAAGTTGGCGCACGGGTGGGGGGTGGGAGGTTCAGCTGGTAGCGGCGCGGCACCTCCAACAGTGGGCGCCACCTTGTACTTGCACACTTTGAGCTCAATTATCTAGGTTGCTATAAGAGATATCGTCAATTTGTCAACTAATAAAATGTTAGTGATAATATGATAAACATTTTACCAGTTAACACATTTTCAATATCTTTTATGGGAACTAAGATAATTGAGCCCAAAATACTAGTATAGGGCGATCGATACCTTGTCTCAAGGCCTGTCAACTTCAAGCCAACTTATCTCGGCTGCCATAAAAAATATCAAAAAGTGGTCAACTGATAAAATGTAGGTGATAATATGATAAAAGTTTCACCAGTTGACAACTTTTTGATATCTCTTACAGTAATCTAGGTAAATCAGCTCAAAGATGATAGATCCTTCTATTTTC</canonical>
            <polymorphic>ACTTTCTGGTTTTCAATAGAGCGCGTTTGTCAAAAAACCTACTGTTTTAACGGAAATGGTCAACTTTGGAGTCCTACAAAAGGGACCCAAGCTTTTTGGATGTGTCTGAAAATTTCAGAATATACTAAACAAAAATAGAACTTCATTTTTGTAGTTGACAACTTTTTGGGGAAATTAGGCTTGGAGGAGATAAACGGTCTAAATTCTAACCTATTTCAGATCAGCATTCAACACATGGAGTTTCCAGATGGTGGACTTCCAGAATTCTCAAAAATCGCTCCACAACTCCAAAGTTTGGATATTCGAGAATGTTCGGGACAGGACGAGTTGCAAATCGGGGATGACAGTTTTAAGGGGCTAGAGCAGACGCTGAGGAATCTCACCATTCATGCATGTAATCTTATGGTAAGTGATTTTGCTTTGTATTTTGAGCTCAATTATCTCCGTTTCTATAAGAGATATCAAAACGTAGTCAACTGAGAAAATGTAGGCGATAATAWGATAAACATATTCTTAGTTAACAACTTTTTGATATCTGCCACTGGAAATGTGATACAAAGGCTCAAAGTTGGCGCACGGGTGGGGGGTGGGAGGTTCAGCTGGTAGCGGCGCGGCACCTCCAACAGTGGGCGCCACCTTGTACTTGCACACTTTGAGCTCAATTATCTAGGTTGCTATAAGAGATATCGTCAATTTGTCAACTAATAAAATGTTAGTGATAATATGATAAACATTTTACCAGTTAACACATTTTCAATATCTTTTATGGGAACTAAGATAATTGAGCCCAAAATACTAGTATAGGGCGATCGATACCTTGTCTCAAGGCCTGTCAACTTCAAGCCAACTTATCTCGGCTGCCATAAAAAATATCAAAAAGTGGTCAACTGATAAAATGTAGGTGATAATATGATAAAAGTTTCACCAGTTGACAACTTTTTGATATCTCTTACAGTAATCTAGGTAAATCAGCTCAAAGATGATAGATCCTTCTATTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCATGTAATCTTATGGTAAGTG</pcr_primer_p1>
		<pcr_primer_p2>GGTATCGATCGCCCTATACTA</pcr_primer_p2>
		<pcr_amplicon_size>428</pcr_amplicon_size>
		<canonical_amplicon>TGCATGTAATCTTATGGTAAGTGATTTTGCTTTGTATTTTGAGCTCAATTATCTCCGTTTCTATAAGAGATATCAAAACGTAGTCAACTGAGAAAATGTAGGCGATAATAAGATAAACATATTCTTAGTTAACAACTTTTTGATATCTGCCACTGGAAATGTGATACAAAGGCTCAAAGTTGGCGCACGGGTGGGGGGTGGGAGGTTCAGCTGGTAGCGGCGCGGCACCTCCAACAGTGGGCGCCACCTTGTACTTGCACACTTTGAGCTCAATTATCTAGGTTGCTATAAGAGATATCGTCAATTTGTCAACTAATAAAATGTTAGTGATAATATGATAAACATTTTACCAGTTAACACATTTTCAATATCTTTTATGGGAACTAAGATAATTGAGCCCAAAATACTAGTATAGGGCGATCGATACC</canonical_amplicon>
		<polymorphic_amplicon>TGCATGTAATCTTATGGTAAGTGATTTTGCTTTGTATTTTGAGCTCAATTATCTCCGTTTCTATAAGAGATATCAAAACGTAGTCAACTGAGAAAATGTAGGCGATAATAWGATAAACATATTCTTAGTTAACAACTTTTTGATATCTGCCACTGGAAATGTGATACAAAGGCTCAAAGTTGGCGCACGGGTGGGGGGTGGGAGGTTCAGCTGGTAGCGGCGCGGCACCTCCAACAGTGGGCGCCACCTTGTACTTGCACACTTTGAGCTCAATTATCTAGGTTGCTATAAGAGATATCGTCAATTTGTCAACTAATAAAATGTTAGTGATAATATGATAAACATTTTACCAGTTAACACATTTTCAATATCTTTTATGGGAACTAAGATAATTGAGCCCAAAATACTAGTATAGGGCGATCGATACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29995</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>152053</contig_pos>
        <strand>+</strand>
        <context>TCAGAACTTC[C/G]GAATATCGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTCAGACTTCAAAATCTTAAGAACTAAAGTTTTCAGAATCTCAGAACTTC</left_flank>
        <right_flank>GAATATCGAAATCTTCGCAATCCAAAAAAGGAACCCTACTTGAAGTCGTT</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCCAGAATTTTAAAACCCCTGAATGTTGGAAATTCAGAATCTCACATTTTCTAATCTTCAAACTTCAGAATTTTGGAATATGCGATTTTCTGAAACGTTCAGATTCTGTTTACAGAATCTCAAAGTTCCTGAATTTCAAATTTTTAAAATCTTGAAAGTTCAGAAATTCGATGGTTCTGAATTTCAGAATCACAAAAATCTCGCGCTCCAGAGTTTCTTGCATCTCCGAATCCCCTATTTTCAGATTCTCACGATCTCCAACGTTCAAATTCTTAAAACCTCGGAATTTCAGAATCTCAGAATCTGAAAATATCGAGATCCCAACATTTTAGAATCTCGGAATTTCAGCATCGAAGAATCTCAGAATTTTGGAATCTCAGGATATTGGGATTTCAGGATTTCAGAACCTGACACTATCGGGATCCCAAAACTTCAGAATCTCAAAACCTCAGACTTCAAAATCTTAAGAACTAAAGTTTTCAGAATCTCAGAACTTCCGAATATCGAAATCTTCGCAATCCAAAAAAGGAACCCTACTTGAAGTCGTTCCAACCGAACATTCAACACTTGATTCGTCCTCAACACATCCTCCAACTGCTGCTGCTTCTGTAGCAACATATCCGACAACTGTGTCGTCGTTCCATCATCCTCCTGTTTCGATTGCTCATCCCTCATTCGTGCTCTCATCTCACTCATTACCTTCCGCAGCTCATTCTCCTTTTCGACTAGTTTCGCCTGATGCTGATCTCCTAGCCTCTTCATTTCTTGTTTCGTGAATTCGTTCTCGATTCTCGAACATTCCACTTTCTCATTCAGAAGGCCTATCGTACTGTCCCACGTCTGTTTCTCCTCGAGATGCGTTCGTTTTTGGTCGGATAGCTGCGATTGGAGATCTCTGCAAAACTCGAAAAGTTGACATTGAAAGCATGAAAAATGGCTCAAAAATCATGAAAAATGCTCCTACTCTGTCCTGAAAACTGTCAAAAAAGACACAGAAA</canonical>
            <polymorphic>ATTCCAGAATTTTAAAACCCCTGAATGTTGGAAATTCAGAATCTCACATTTTCTAATCTTCAAACTTCAGAATTTTGGAATATGCGATTTTCTGAAACGTTCAGATTCTGTTTACAGAATCTCAAAGTTCCTGAATTTCAAATTTTTAAAATCTTGAAAGTTCAGAAATTCGATGGTTCTGAATTTCAGAATCACAAAAATCTCGCGCTCCAGAGTTTCTTGCATCTCCGAATCCCCTATTTTCAGATTCTCACGATCTCCAACGTTCAAATTCTTAAAACCTCGGAATTTCAGAATCTCAGAATCTGAAAATATCGAGATCCCAACATTTTAGAATCTCGGAATTTCAGCATCGAAGAATCTCAGAATTTTGGAATCTCAGGATATTGGGATTTCAGGATTTCAGAACCTGACACTATCGGGATCCCAAAACTTCAGAATCTCAAAACCTCAGACTTCAAAATCTTAAGAACTAAAGTTTTCAGAATCTCAGAACTTCSGAATATCGAAATCTTCGCAATCCAAAAAAGGAACCCTACTTGAAGTCGTTCCAACCGAACATTCAACACTTGATTCGTCCTCAACACATCCTCCAACTGCTGCTGCTTCTGTAGCAACATATCCGACAACTGTGTCGTCGTTCCATCATCCTCCTGTTTCGATTGCTCATCCCTCATTCGTGCTCTCATCTCACTCATTACCTTCCGCAGCTCATTCTCCTTTTCGACTAGTTTCGCCTGATGCTGATCTCCTAGCCTCTTCATTTCTTGTTTCGTGAATTCGTTCTCGATTCTCGAACATTCCACTTTCTCATTCAGAAGGCCTATCGTACTGTCCCACGTCTGTTTCTCCTCGAGATGCGTTCGTTTTTGGTCGGATAGCTGCGATTGGAGATCTCTGCAAAACTCGAAAAGTTGACATTGAAAGCATGAAAAATGGCTCAAAAATCATGAAAAATGCTCCTACTCTGTCCTGAAAACTGTCAAAAAAGACACAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAACCTCAGACTTCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GAGATGAGAGCACGAATGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAAAACCTCAGACTTCAAAATCTTAAGAACTAAAGTTTTCAGAATCTCAGAACTTCCGAATATCGAAATCTTCGCAATCCAAAAAAGGAACCCTACTTGAAGTCGTTCCAACCGAACATTCAACACTTGATTCGTCCTCAACACATCCTCCAACTGCTGCTGCTTCTGTAGCAACATATCCGACAACTGTGTCGTCGTTCCATCATCCTCCTGTTTCGATTGCTCATCCCTCATTCGTGCTCTCATCTC</canonical_amplicon>
		<polymorphic_amplicon>TCAAAACCTCAGACTTCAAAATCTTAAGAACTAAAGTTTTCAGAATCTCAGAACTTCSGAATATCGAAATCTTCGCAATCCAAAAAAGGAACCCTACTTGAAGTCGTTCCAACCGAACATTCAACACTTGATTCGTCCTCAACACATCCTCCAACTGCTGCTGCTTCTGTAGCAACATATCCGACAACTGTGTCGTCGTTCCATCATCCTCCTGTTTCGATTGCTCATCCCTCATTCGTGCTCTCATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29996</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>152498</contig_pos>
        <strand>+</strand>
        <context>AATGGCTCAA[A/G]AATCATGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTCTGCAAAACTCGAAAAGTTGACATTGAAAGCATGAAAAATGGCTCAA</left_flank>
        <right_flank>AATCATGAAAAATGCTCCTACTCTGTCCTGAAAACTGTCAAAAAAGACAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACCTCAGACTTCAAAATCTTAAGAACTAAAGTTTTCAGAATCTCAGAACTTCCGAATATCGAAATCTTCGCAATCCAAAAAAGGAACCCTACTTGAAGTCGTTCCAACCGAACATTCAACACTTGATTCGTCCTCAACACATCCTCCAACTGCTGCTGCTTCTGTAGCAACATATCCGACAACTGTGTCGTCGTTCCATCATCCTCCTGTTTCGATTGCTCATCCCTCATTCGTGCTCTCATCTCACTCATTACCTTCCGCAGCTCATTCTCCTTTTCGACTAGTTTCGCCTGATGCTGATCTCCTAGCCTCTTCATTTCTTGTTTCGTGAATTCGTTCTCGATTCTCGAACATTCCACTTTCTCATTCAGAAGGCCTATCGTACTGTCCCACGTCTGTTTCTCCTCGAGATGCGTTCGTTTTTGGTCGGATAGCTGCGATTGGAGATCTCTGCAAAACTCGAAAAGTTGACATTGAAAGCATGAAAAATGGCTCAAAAATCATGAAAAATGCTCCTACTCTGTCCTGAAAACTGTCAAAAAAGACACAGAAATTAGGTATTTTTTCTGGCTAATTTCTAGATTTTTGCACATTTTCTGCTCAATTTTAGCCGATTTGTTAGCCGGTTTTTCGCTGATTTCTACTAAATTATAGTTGGATTCTTCTCATTTTTTGATAATTTTCAGCTCATTTTTTGTTGATTTACTCCCAATTTTCAGCCTTTAATTAGGCTTAATTTCACTCGATTTCACTCGATTTCTGATTTTTTTTTCCATATTTTAAGCCTAATTTTAATCCCATTGTGTATTTTTCAGCCAATTTTGCTCAATTTTAGCTGATTTTTGTTAACCAAAGTATCACTATTTTTAGCTGTTTTCTGCTCGTTTTAGCATATTTTTAAAAACAATTTTAGAGGTCTCTGCAAAATTCGAAAAATGAATTATTCGTAGAAATCGGCATATTTTCTGACAAATTTCGAGATTTTGGGACGATTTTTT</canonical>
            <polymorphic>AAACCTCAGACTTCAAAATCTTAAGAACTAAAGTTTTCAGAATCTCAGAACTTCCGAATATCGAAATCTTCGCAATCCAAAAAAGGAACCCTACTTGAAGTCGTTCCAACCGAACATTCAACACTTGATTCGTCCTCAACACATCCTCCAACTGCTGCTGCTTCTGTAGCAACATATCCGACAACTGTGTCGTCGTTCCATCATCCTCCTGTTTCGATTGCTCATCCCTCATTCGTGCTCTCATCTCACTCATTACCTTCCGCAGCTCATTCTCCTTTTCGACTAGTTTCGCCTGATGCTGATCTCCTAGCCTCTTCATTTCTTGTTTCGTGAATTCGTTCTCGATTCTCGAACATTCCACTTTCTCATTCAGAAGGCCTATCGTACTGTCCCACGTCTGTTTCTCCTCGAGATGCGTTCGTTTTTGGTCGGATAGCTGCGATTGGAGATCTCTGCAAAACTCGAAAAGTTGACATTGAAAGCATGAAAAATGGCTCAARAATCATGAAAAATGCTCCTACTCTGTCCTGAAAACTGTCAAAAAAGACACAGAAATTAGGTATTTTTTCTGGCTAATTTCTAGATTTTTGCACATTTTCTGCTCAATTTTAGCCGATTTGTTAGCCGGTTTTTCGCTGATTTCTACTAAATTATAGTTGGATTCTTCTCATTTTTTGATAATTTTCAGCTCATTTTTTGTTGATTTACTCCCAATTTTCAGCCTTTAATTAGGCTTAATTTCACTCGATTTCACTCGATTTCTGATTTTTTTTTCCATATTTTAAGCCTAATTTTAATCCCATTGTGTATTTTTCAGCCAATTTTGCTCAATTTTAGCTGATTTTTGTTAACCAAAGTATCACTATTTTTAGCTGTTTTCTGCTCGTTTTAGCATATTTTTAAAAACAATTTTAGAGGTCTCTGCAAAATTCGAAAAATGAATTATTCGTAGAAATCGGCATATTTTCTGACAAATTTCGAGATTTTGGGACGATTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACATTCCACTTTCTCATTCAG</pcr_primer_p1>
		<pcr_primer_p2>GAAAATGTGCAAAAATCTAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AACATTCCACTTTCTCATTCAGAAGGCCTATCGTACTGTCCCACGTCTGTTTCTCCTCGAGATGCGTTCGTTTTTGGTCGGATAGCTGCGATTGGAGATCTCTGCAAAACTCGAAAAGTTGACATTGAAAGCATGAAAAATGGCTCAAAAATCATGAAAAATGCTCCTACTCTGTCCTGAAAACTGTCAAAAAAGACACAGAAATTAGGTATTTTTTCTGGCTAATTTCTAGATTTTTGCACATTTTC</canonical_amplicon>
		<polymorphic_amplicon>AACATTCCACTTTCTCATTCAGAAGGCCTATCGTACTGTCCCACGTCTGTTTCTCCTCGAGATGCGTTCGTTTTTGGTCGGATAGCTGCGATTGGAGATCTCTGCAAAACTCGAAAAGTTGACATTGAAAGCATGAAAAATGGCTCAARAATCATGAAAAATGCTCCTACTCTGTCCTGAAAACTGTCAAAAAAGACACAGAAATTAGGTATTTTTTCTGGCTAATTTCTAGATTTTTGCACATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29997</snp_id>
        <super_contig>c005001552.Contig1</super_contig>
        <contig_pos>169182</contig_pos>
        <strand>+</strand>
        <context>TCCTCCTCAG[A/C]TGGAAGCACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATTTACTACCTGCTGAGCTATGTAGGCGTGCGGTCGACATCCTCCTCAG</left_flank>
        <right_flank>TGGAAGCACCGCTTCGAGCTCTATTATCTCGTTTCTTGTGAGAGATATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTCACTGCCCAACCCAACATCACAAGCTAAGAAACTCGAGAGTTAATCTACCAAAGATGAACATTGAGTTTTTCGATTTCGAACGATGGATAGTTCATTGGCTACGCAATCGTCGTCCCATCGGAACCATTTATATTTATAAGAAGGTGAAGGGCGCTCCGCCATATCTTCTGGAGCAGATTAGAAAACGACCGGAGTTGATTGAAGAGACTGAGAAGTGAGATTTTTTTCCAAATCACCAAAAAGCTGAATTTCCTGAAATTTCGAATAAAAACAAGATTTTAAAACCCACTAGTAGCGGCTCTTTGTGCTCATATATCTCGGTTCCTTTGAAAGTTATCAAAAATTGGTGAACTACAAAAATGTAGTTTATATCATAACAAACATTTTTATCAGTTTACAATTTTTTGATATCTCTCTTGAGAATCAAGATAATTGAGCTCAAAGATTTACTACCTGCTGAGCTATGTAGGCGTGCGGTCGACATCCTCCTCAGATGGAAGCACCGCTTCGAGCTCTATTATCTCGTTTCTTGTGAGAGATATCAAAAATTGGTAAACTACAAAAATGTAGTTAATATCATGACAAACATTTTATCAGTTAACAGATTTTTTATATCTTTGAAAAGAACCAAGATAATTGAGATCAAAGGACGGCTAACGGCTGAGCTACGCAGACGACATTCTCCTCAGCTGGAAGCACCGCTGTGAGCTTTATTATCTTGTTTTTTGTAAGAGATATCAAAAATTTGTGAACTACAAAAGTGTAGTTAATATCATAACAAACATTTTATCAGTTGACAGTTTTTCGATATCTCTCTTGAGAATCGAGATAATTGAGCTCAAAGATTTACTACCTGCTGAGCTATGTACGCGGGCGGTCGACATCCTCCTCAGCTGGAAGCACCGCTTCGAGCTCTATTATCTTGTTTTCTGTGAGAGATATCAAAAATTGGTAAACTGCAAAAGTGTAGTTAATATCATAAAAAACATTTTAG</canonical>
            <polymorphic>CTTTTCACTGCCCAACCCAACATCACAAGCTAAGAAACTCGAGAGTTAATCTACCAAAGATGAACATTGAGTTTTTCGATTTCGAACGATGGATAGTTCATTGGCTACGCAATCGTCGTCCCATCGGAACCATTTATATTTATAAGAAGGTGAAGGGCGCTCCGCCATATCTTCTGGAGCAGATTAGAAAACGACCGGAGTTGATTGAAGAGACTGAGAAGTGAGATTTTTTTCCAAATCACCAAAAAGCTGAATTTCCTGAAATTTCGAATAAAAACAAGATTTTAAAACCCACTAGTAGCGGCTCTTTGTGCTCATATATCTCGGTTCCTTTGAAAGTTATCAAAAATTGGTGAACTACAAAAATGTAGTTTATATCATAACAAACATTTTTATCAGTTTACAATTTTTTGATATCTCTCTTGAGAATCAAGATAATTGAGCTCAAAGATTTACTACCTGCTGAGCTATGTAGGCGTGCGGTCGACATCCTCCTCAGMTGGAAGCACCGCTTCGAGCTCTATTATCTCGTTTCTTGTGAGAGATATCAAAAATTGGTAAACTACAAAAATGTAGTTAATATCATGACAAACATTTTATCAGTTAACAGATTTTTTATATCTTTGAAAAGAACCAAGATAATTGAGATCAAAGGACGGCTAACGGCTGAGCTACGCAGACGACATTCTCCTCAGCTGGAAGCACCGCTGTGAGCTTTATTATCTTGTTTTTTGTAAGAGATATCAAAAATTTGTGAACTACAAAAGTGTAGTTAATATCATAACAAACATTTTATCAGTTGACAGTTTTTCGATATCTCTCTTGAGAATCGAGATAATTGAGCTCAAAGATTTACTACCTGCTGAGCTATGTACGCGGGCGGTCGACATCCTCCTCAGCTGGAAGCACCGCTTCGAGCTCTATTATCTTGTTTTCTGTGAGAGATATCAAAAATTGGTAAACTGCAAAAGTGTAGTTAATATCATAAAAAACATTTTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>502 372 126</canonical_bands>
                <polymorphic_bands>874 126</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACAAGATTTTAAAACCCACTA</pcr_primer_p1>
		<pcr_primer_p2>ACATAGCTCAGCAGGTAGTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>600</pcr_amplicon_size>
		<canonical_amplicon>AAAACAAGATTTTAAAACCCACTAGTAGCGGCTCTTTGTGCTCATATATCTCGGTTCCTTTGAAAGTTATCAAAAATTGGTGAACTACAAAAATGTAGTTTATATCATAACAAACATTTTTATCAGTTTACAATTTTTTGATATCTCTCTTGAGAATCAAGATAATTGAGCTCAAAGATTTACTACCTGCTGAGCTATGTAGGCGTGCGGTCGACATCCTCCTCAGATGGAAGCACCGCTTCGAGCTCTATTATCTCGTTTCTTGTGAGAGATATCAAAAATTGGTAAACTACAAAAATGTAGTTAATATCATGACAAACATTTTATCAGTTAACAGATTTTTTATATCTTTGAAAAGAACCAAGATAATTGAGATCAAAGGACGGCTAACGGCTGAGCTACGCAGACGACATTCTCCTCAGCTGGAAGCACCGCTGTGAGCTTTATTATCTTGTTTTTTGTAAGAGATATCAAAAATTTGTGAACTACAAAAGTGTAGTTAATATCATAACAAACATTTTATCAGTTGACAGTTTTTCGATATCTCTCTTGAGAATCGAGATAATTGAGCTCAAAGATTTACTACCTGCTGAGCTATGT</canonical_amplicon>
		<polymorphic_amplicon>AAAACAAGATTTTAAAACCCACTAGTAGCGGCTCTTTGTGCTCATATATCTCGGTTCCTTTGAAAGTTATCAAAAATTGGTGAACTACAAAAATGTAGTTTATATCATAACAAACATTTTTATCAGTTTACAATTTTTTGATATCTCTCTTGAGAATCAAGATAATTGAGCTCAAAGATTTACTACCTGCTGAGCTATGTAGGCGTGCGGTCGACATCCTCCTCAGMTGGAAGCACCGCTTCGAGCTCTATTATCTCGTTTCTTGTGAGAGATATCAAAAATTGGTAAACTACAAAAATGTAGTTAATATCATGACAAACATTTTATCAGTTAACAGATTTTTTATATCTTTGAAAAGAACCAAGATAATTGAGATCAAAGGACGGCTAACGGCTGAGCTACGCAGACGACATTCTCCTCAGCTGGAAGCACCGCTGTGAGCTTTATTATCTTGTTTTTTGTAAGAGATATCAAAAATTTGTGAACTACAAAAGTGTAGTTAATATCATAACAAACATTTTATCAGTTGACAGTTTTTCGATATCTCTCTTGAGAATCGAGATAATTGAGCTCAAAGATTTACTACCTGCTGAGCTATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29998</snp_id>
        <super_contig>c005001586.Contig1</super_contig>
        <contig_pos>4529</contig_pos>
        <strand>+</strand>
        <context>CTCATCCACG[C/T]GCAGTTCCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCCGCCATCAACAACTTGGCCACCATCACTCGGATACCACTCATCCACG</left_flank>
        <right_flank>GCAGTTCCAAAAAACTTTGACCTAAAAACCATAACCGCCTGGAAACCCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGCATGACTGGTAGTACTGGTAGTTTATGAAGCACTGTAGTATCAAGTCACACTTGTTCAACTGCATCATGCGCATTAAAGCAGTCTGATATTCGGTCTTCTTGTTCAGGAACCAATGCCGCCAGATTCTGACGCACGTCTCTACCCGGACTATAAGGGAGACAAAACCTTTAACAAGACGTAAAACAATGTAACGGGAAATCCGTAAATAATTACCACATCTACAGTCTTTCTCTAAAATCTACATCCTTGACATTCTCGACATAAATAGGAATGTCTAGAGCACAAATATACATAAAACGAATTATACAACGAACTACCAACAGTTGTCCCACCAGTCTTCTCCAAAGACGATGAACAGTTCCTACACGAACACAACATTAACCCAAAGAAATTGATGAAAACTCAGTGACAAACCGACGAATTTCATCATTGGGTACAAAAGTTGGCCGCCATCAACAACTTGGCCACCATCACTCGGATACCACTCATCCACGTGCAGTTCCAAAAAACTTTGACCTAAAAACCATAACCGCCTGGAAACCCAGCACATATGCGAAGCTCGCTTGGCATCGAATCTCCGCCGGCGCTTCAAAGCAAAAAAAAAAACCACTAAATGAAAAGCTTACCAAACAGTTCAAATCAACAACAATATGAGACGAACAGAAAGAAACCTACTCACAGTTTCCTTTCAACGGAACATAGCAACAGCTGAGAGACCACAATTTCGTGGCAGGAAAACGTCTTTTTGCGTCGCTAAAAACAATCTCAAAACATTGCCTACCTACAGGCAGATGACAAAATCATACAGTAGCTAACCAATGGAATCATCGTTAGTTCCACAAGACGAGGCAGACATTGTCCTTCACTACTATACCCCACATAAAACGTCAGCTCACACCAAAATAACGAGCTGTCATTGAACCACTTTCTAGGATCATCTATCCTGAAATCAATTCGAGGAATCTTCTCAGTTCGAACACAACGTCATCTGTTCA</canonical>
            <polymorphic>TTTGCATGACTGGTAGTACTGGTAGTTTATGAAGCACTGTAGTATCAAGTCACACTTGTTCAACTGCATCATGCGCATTAAAGCAGTCTGATATTCGGTCTTCTTGTTCAGGAACCAATGCCGCCAGATTCTGACGCACGTCTCTACCCGGACTATAAGGGAGACAAAACCTTTAACAAGACGTAAAACAATGTAACGGGAAATCCGTAAATAATTACCACATCTACAGTCTTTCTCTAAAATCTACATCCTTGACATTCTCGACATAAATAGGAATGTCTAGAGCACAAATATACATAAAACGAATTATACAACGAACTACCAACAGTTGTCCCACCAGTCTTCTCCAAAGACGATGAACAGTTCCTACACGAACACAACATTAACCCAAAGAAATTGATGAAAACTCAGTGACAAACCGACGAATTTCATCATTGGGTACAAAAGTTGGCCGCCATCAACAACTTGGCCACCATCACTCGGATACCACTCATCCACGYGCAGTTCCAAAAAACTTTGACCTAAAAACCATAACCGCCTGGAAACCCAGCACATATGCGAAGCTCGCTTGGCATCGAATCTCCGCCGGCGCTTCAAAGCAAAAAAAAAAACCACTAAATGAAAAGCTTACCAAACAGTTCAAATCAACAACAATATGAGACGAACAGAAAGAAACCTACTCACAGTTTCCTTTCAACGGAACATAGCAACAGCTGAGAGACCACAATTTCGTGGCAGGAAAACGTCTTTTTGCGTCGCTAAAAACAATCTCAAAACATTGCCTACCTACAGGCAGATGACAAAATCATACAGTAGCTAACCAATGGAATCATCGTTAGTTCCACAAGACGAGGCAGACATTGTCCTTCACTACTATACCCCACATAAAACGTCAGCTCACACCAAAATAACGAGCTGTCATTGAACCACTTTCTAGGATCATCTATCCTGAAATCAATTCGAGGAATCTTCTCAGTTCGAACACAACGTCATCTGTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACGTG</site>
                <isoschizomers>
                    <enzyme>AcvI</enzyme>
                    <enzyme>BbrPI</enzyme>
                    <enzyme>Eco72I</enzyme>
                    <enzyme>PmaCI</enzyme>
                    <enzyme>PmlI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>499 435 62 4</canonical_bands>
                <polymorphic_bands>934 62 4</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>110 84 82 69 67 62 59 55 51 49 41 36 36 35 27 26 17 16 16 13 11 10 8 6 6 4 2 2</canonical_bands>
                <polymorphic_bands>110 84 82 69 67 62 59 55 55 49 41 36 36 35 27 26 17 16 16 13 11 10 8 6 6 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>316 246 147 138 97 43 13</canonical_bands>
                <polymorphic_bands>562 147 138 97 43 13</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCATCATTGGGTACAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTTCTGTTCGTCTCATATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTCATCATTGGGTACAAAAGTTGGCCGCCATCAACAACTTGGCCACCATCACTCGGATACCACTCATCCACGTGCAGTTCCAAAAAACTTTGACCTAAAAACCATAACCGCCTGGAAACCCAGCACATATGCGAAGCTCGCTTGGCATCGAATCTCCGCCGGCGCTTCAAAGCAAAAAAAAAAACCACTAAATGAAAAGCTTACCAAACAGTTCAAATCAACAACAATATGAGACGAACAGAAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTCATCATTGGGTACAAAAGTTGGCCGCCATCAACAACTTGGCCACCATCACTCGGATACCACTCATCCACGYGCAGTTCCAAAAAACTTTGACCTAAAAACCATAACCGCCTGGAAACCCAGCACATATGCGAAGCTCGCTTGGCATCGAATCTCCGCCGGCGCTTCAAAGCAAAAAAAAAAACCACTAAATGAAAAGCTTACCAAACAGTTCAAATCAACAACAATATGAGACGAACAGAAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb29999</snp_id>
        <super_contig>c005001586.Contig1</super_contig>
        <contig_pos>4614</contig_pos>
        <strand>+</strand>
        <context>TCGAATCTCC[A/G]CCGGCGCTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGCCTGGAAACCCAGCACATATGCGAAGCTCGCTTGGCATCGAATCTCC</left_flank>
        <right_flank>CCGGCGCTTCAAAGCAAAAAAAAAAACCACTAAATGAAAAGCTTACCAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCTGATATTCGGTCTTCTTGTTCAGGAACCAATGCCGCCAGATTCTGACGCACGTCTCTACCCGGACTATAAGGGAGACAAAACCTTTAACAAGACGTAAAACAATGTAACGGGAAATCCGTAAATAATTACCACATCTACAGTCTTTCTCTAAAATCTACATCCTTGACATTCTCGACATAAATAGGAATGTCTAGAGCACAAATATACATAAAACGAATTATACAACGAACTACCAACAGTTGTCCCACCAGTCTTCTCCAAAGACGATGAACAGTTCCTACACGAACACAACATTAACCCAAAGAAATTGATGAAAACTCAGTGACAAACCGACGAATTTCATCATTGGGTACAAAAGTTGGCCGCCATCAACAACTTGGCCACCATCACTCGGATACCACTCATCCACGTGCAGTTCCAAAAAACTTTGACCTAAAAACCATAACCGCCTGGAAACCCAGCACATATGCGAAGCTCGCTTGGCATCGAATCTCCGCCGGCGCTTCAAAGCAAAAAAAAAAACCACTAAATGAAAAGCTTACCAAACAGTTCAAATCAACAACAATATGAGACGAACAGAAAGAAACCTACTCACAGTTTCCTTTCAACGGAACATAGCAACAGCTGAGAGACCACAATTTCGTGGCAGGAAAACGTCTTTTTGCGTCGCTAAAAACAATCTCAAAACATTGCCTACCTACAGGCAGATGACAAAATCATACAGTAGCTAACCAATGGAATCATCGTTAGTTCCACAAGACGAGGCAGACATTGTCCTTCACTACTATACCCCACATAAAACGTCAGCTCACACCAAAATAACGAGCTGTCATTGAACCACTTTCTAGGATCATCTATCCTGAAATCAATTCGAGGAATCTTCTCAGTTCGAACACAACGTCATCTGTTCACAATAGAAACGTCAAACAGTTCTTGTGGCTGAAAAACACAGCCAAACGATCAATAAACCAACGTAATCAACAGTATTGCGTATTG</canonical>
            <polymorphic>GTCTGATATTCGGTCTTCTTGTTCAGGAACCAATGCCGCCAGATTCTGACGCACGTCTCTACCCGGACTATAAGGGAGACAAAACCTTTAACAAGACGTAAAACAATGTAACGGGAAATCCGTAAATAATTACCACATCTACAGTCTTTCTCTAAAATCTACATCCTTGACATTCTCGACATAAATAGGAATGTCTAGAGCACAAATATACATAAAACGAATTATACAACGAACTACCAACAGTTGTCCCACCAGTCTTCTCCAAAGACGATGAACAGTTCCTACACGAACACAACATTAACCCAAAGAAATTGATGAAAACTCAGTGACAAACCGACGAATTTCATCATTGGGTACAAAAGTTGGCCGCCATCAACAACTTGGCCACCATCACTCGGATACCACTCATCCACGTGCAGTTCCAAAAAACTTTGACCTAAAAACCATAACCGCCTGGAAACCCAGCACATATGCGAAGCTCGCTTGGCATCGAATCTCCRCCGGCGCTTCAAAGCAAAAAAAAAAACCACTAAATGAAAAGCTTACCAAACAGTTCAAATCAACAACAATATGAGACGAACAGAAAGAAACCTACTCACAGTTTCCTTTCAACGGAACATAGCAACAGCTGAGAGACCACAATTTCGTGGCAGGAAAACGTCTTTTTGCGTCGCTAAAAACAATCTCAAAACATTGCCTACCTACAGGCAGATGACAAAATCATACAGTAGCTAACCAATGGAATCATCGTTAGTTCCACAAGACGAGGCAGACATTGTCCTTCACTACTATACCCCACATAAAACGTCAGCTCACACCAAAATAACGAGCTGTCATTGAACCACTTTCTAGGATCATCTATCCTGAAATCAATTCGAGGAATCTTCTCAGTTCGAACACAACGTCATCTGTTCACAATAGAAACGTCAAACAGTTCTTGTGGCTGAAAAACACAGCCAAACGATCAATAAACCAACGTAATCAACAGTATTGCGTATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>502 331 83 48 36</canonical_bands>
                <polymorphic_bands>550 331 83 36</polymorphic_bands>
            </assay>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 480 22</canonical_bands>
                <polymorphic_bands>520 480</polymorphic_bands>
            </assay>
            <assay>
                <site>GCCGGC</site>
                <isoschizomers>
                    <enzyme>MroNI</enzyme>
                    <enzyme>NaeI</enzyme>
                    <enzyme>NgoAIV</enzyme>
                    <enzyme>NgoMIV</enzyme>
                    <enzyme>PdiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CRCCGGYG</site>
                <isoschizomers>
                    <enzyme>SgrAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CGCCGGCG</site>
                <isoschizomers>
                    <enzyme>Sse232I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCATCATTGGGTACAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTTCTGTTCGTCTCATATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTCATCATTGGGTACAAAAGTTGGCCGCCATCAACAACTTGGCCACCATCACTCGGATACCACTCATCCACGTGCAGTTCCAAAAAACTTTGACCTAAAAACCATAACCGCCTGGAAACCCAGCACATATGCGAAGCTCGCTTGGCATCGAATCTCCGCCGGCGCTTCAAAGCAAAAAAAAAAACCACTAAATGAAAAGCTTACCAAACAGTTCAAATCAACAACAATATGAGACGAACAGAAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTCATCATTGGGTACAAAAGTTGGCCGCCATCAACAACTTGGCCACCATCACTCGGATACCACTCATCCACGTGCAGTTCCAAAAAACTTTGACCTAAAAACCATAACCGCCTGGAAACCCAGCACATATGCGAAGCTCGCTTGGCATCGAATCTCCRCCGGCGCTTCAAAGCAAAAAAAAAAACCACTAAATGAAAAGCTTACCAAACAGTTCAAATCAACAACAATATGAGACGAACAGAAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30000</snp_id>
        <super_contig>c005001586.Contig1</super_contig>
        <contig_pos>4630</contig_pos>
        <strand>+</strand>
        <context>GCTTCAAAGC[A/G]AAAAAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACATATGCGAAGCTCGCTTGGCATCGAATCTCCGCCGGCGCTTCAAAGC</left_flank>
        <right_flank>AAAAAAAAAACCACTAAATGAAAAGCTTACCAAACAGTTCAAATCAACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTGTTCAGGAACCAATGCCGCCAGATTCTGACGCACGTCTCTACCCGGACTATAAGGGAGACAAAACCTTTAACAAGACGTAAAACAATGTAACGGGAAATCCGTAAATAATTACCACATCTACAGTCTTTCTCTAAAATCTACATCCTTGACATTCTCGACATAAATAGGAATGTCTAGAGCACAAATATACATAAAACGAATTATACAACGAACTACCAACAGTTGTCCCACCAGTCTTCTCCAAAGACGATGAACAGTTCCTACACGAACACAACATTAACCCAAAGAAATTGATGAAAACTCAGTGACAAACCGACGAATTTCATCATTGGGTACAAAAGTTGGCCGCCATCAACAACTTGGCCACCATCACTCGGATACCACTCATCCACGTGCAGTTCCAAAAAACTTTGACCTAAAAACCATAACCGCCTGGAAACCCAGCACATATGCGAAGCTCGCTTGGCATCGAATCTCCGCCGGCGCTTCAAAGCAAAAAAAAAAACCACTAAATGAAAAGCTTACCAAACAGTTCAAATCAACAACAATATGAGACGAACAGAAAGAAACCTACTCACAGTTTCCTTTCAACGGAACATAGCAACAGCTGAGAGACCACAATTTCGTGGCAGGAAAACGTCTTTTTGCGTCGCTAAAAACAATCTCAAAACATTGCCTACCTACAGGCAGATGACAAAATCATACAGTAGCTAACCAATGGAATCATCGTTAGTTCCACAAGACGAGGCAGACATTGTCCTTCACTACTATACCCCACATAAAACGTCAGCTCACACCAAAATAACGAGCTGTCATTGAACCACTTTCTAGGATCATCTATCCTGAAATCAATTCGAGGAATCTTCTCAGTTCGAACACAACGTCATCTGTTCACAATAGAAACGTCAAACAGTTCTTGTGGCTGAAAAACACAGCCAAACGATCAATAAACCAACGTAATCAACAGTATTGCGTATTGCATTATTGGAAATCAC</canonical>
            <polymorphic>TCTTGTTCAGGAACCAATGCCGCCAGATTCTGACGCACGTCTCTACCCGGACTATAAGGGAGACAAAACCTTTAACAAGACGTAAAACAATGTAACGGGAAATCCGTAAATAATTACCACATCTACAGTCTTTCTCTAAAATCTACATCCTTGACATTCTCGACATAAATAGGAATGTCTAGAGCACAAATATACATAAAACGAATTATACAACGAACTACCAACAGTTGTCCCACCAGTCTTCTCCAAAGACGATGAACAGTTCCTACACGAACACAACATTAACCCAAAGAAATTGATGAAAACTCAGTGACAAACCGACGAATTTCATCATTGGGTACAAAAGTTGGCCGCCATCAACAACTTGGCCACCATCACTCGGATACCACTCATCCACGTGCAGTTCCAAAAAACTTTGACCTAAAAACCATAACCGCCTGGAAACCCAGCACATATGCGAAGCTCGCTTGGCATCGAATCTCCGCCGGCGCTTCAAAGCRAAAAAAAAAACCACTAAATGAAAAGCTTACCAAACAGTTCAAATCAACAACAATATGAGACGAACAGAAAGAAACCTACTCACAGTTTCCTTTCAACGGAACATAGCAACAGCTGAGAGACCACAATTTCGTGGCAGGAAAACGTCTTTTTGCGTCGCTAAAAACAATCTCAAAACATTGCCTACCTACAGGCAGATGACAAAATCATACAGTAGCTAACCAATGGAATCATCGTTAGTTCCACAAGACGAGGCAGACATTGTCCTTCACTACTATACCCCACATAAAACGTCAGCTCACACCAAAATAACGAGCTGTCATTGAACCACTTTCTAGGATCATCTATCCTGAAATCAATTCGAGGAATCTTCTCAGTTCGAACACAACGTCATCTGTTCACAATAGAAACGTCAAACAGTTCTTGTGGCTGAAAAACACAGCCAAACGATCAATAAACCAACGTAATCAACAGTATTGCGTATTGCATTATTGGAAATCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCATCATTGGGTACAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTTCTGTTCGTCTCATATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTCATCATTGGGTACAAAAGTTGGCCGCCATCAACAACTTGGCCACCATCACTCGGATACCACTCATCCACGTGCAGTTCCAAAAAACTTTGACCTAAAAACCATAACCGCCTGGAAACCCAGCACATATGCGAAGCTCGCTTGGCATCGAATCTCCGCCGGCGCTTCAAAGCAAAAAAAAAAACCACTAAATGAAAAGCTTACCAAACAGTTCAAATCAACAACAATATGAGACGAACAGAAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTCATCATTGGGTACAAAAGTTGGCCGCCATCAACAACTTGGCCACCATCACTCGGATACCACTCATCCACGTGCAGTTCCAAAAAACTTTGACCTAAAAACCATAACCGCCTGGAAACCCAGCACATATGCGAAGCTCGCTTGGCATCGAATCTCCGCCGGCGCTTCAAAGCRAAAAAAAAAACCACTAAATGAAAAGCTTACCAAACAGTTCAAATCAACAACAATATGAGACGAACAGAAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30001</snp_id>
        <super_contig>c005001586.Contig1</super_contig>
        <contig_pos>4652</contig_pos>
        <strand></strand>
        <context>CACTAAATGA[A/G]AAGCTTACCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATCGAATCTCCGCCGGCGCTTCAAAGCAAAAAAAAAAACCACTAAATGA</left_flank>
        <right_flank>AAGCTTACCAAACAGTTCAAATCAACAACAATATGAGACGAACAGAAAGA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGATTCTGACGCACGTCTCTACCCGGACTATAAGGGAGACAAAACCTTTAACAAGACGTAAAACAATGTAACGGGAAATCCGTAAATAATTACCACATCTACAGTCTTTCTCTAAAATCTACATCCTTGACATTCTCGACATAAATAGGAATGTCTAGAGCACAAATATACATAAAACGAATTATACAACGAACTACCAACAGTTGTCCCACCAGTCTTCTCCAAAGACGATGAACAGTTCCTACACGAACACAACATTAACCCAAAGAAATTGATGAAAACTCAGTGACAAACCGACGAATTTCATCATTGGGTACAAAAGTTGGCCGCCATCAACAACTTGGCCACCATCACTCGGATACCACTCATCCACGTGCAGTTCCAAAAAACTTTGACCTAAAAACCATAACCGCCTGGAAACCCAGCACATATGCGAAGCTCGCTTGGCATCGAATCTCCGCCGGCGCTTCAAAGCAAAAAAAAAAACCACTAAATGAAAAGCTTACCAAACAGTTCAAATCAACAACAATATGAGACGAACAGAAAGAAACCTACTCACAGTTTCCTTTCAACGGAACATAGCAACAGCTGAGAGACCACAATTTCGTGGCAGGAAAACGTCTTTTTGCGTCGCTAAAAACAATCTCAAAACATTGCCTACCTACAGGCAGATGACAAAATCATACAGTAGCTAACCAATGGAATCATCGTTAGTTCCACAAGACGAGGCAGACATTGTCCTTCACTACTATACCCCACATAAAACGTCAGCTCACACCAAAATAACGAGCTGTCATTGAACCACTTTCTAGGATCATCTATCCTGAAATCAATTCGAGGAATCTTCTCAGTTCGAACACAACGTCATCTGTTCACAATAGAAACGTCAAACAGTTCTTGTGGCTGAAAAACACAGCCAAACGATCAATAAACCAACGTAATCAACAGTATTGCGTATTGCATTATTGGAAATCACAATTTCTCATCTCACTATATTG</canonical>
            <polymorphic>CCAGATTCTGACGCACGTCTCTACCCGGACTATAAGGGAGACAAAACCTTTAACAAGACGTAAAACAATGTAACGGGAAATCCGTAAATAATTACCACATCTACAGTCTTTCTCTAAAATCTACATCCTTGACATTCTCGACATAAATAGGAATGTCTAGAGCACAAATATACATAAAACGAATTATACAACGAACTACCAACAGTTGTCCCACCAGTCTTCTCCAAAGACGATGAACAGTTCCTACACGAACACAACATTAACCCAAAGAAATTGATGAAAACTCAGTGACAAACCGACGAATTTCATCATTGGGTACAAAAGTTGGCCGCCATCAACAACTTGGCCACCATCACTCGGATACCACTCATCCACGTGCAGTTCCAAAAAACTTTGACCTAAAAACCATAACCGCCTGGAAACCCAGCACATATGCGAAGCTCGCTTGGCATCGAATCTCCGCCGGCGCTTCAAAGCAAAAAAAAAAACCACTAAATGARAAGCTTACCAAACAGTTCAAATCAACAACAATATGAGACGAACAGAAAGAAACCTACTCACAGTTTCCTTTCAACGGAACATAGCAACAGCTGAGAGACCACAATTTCGTGGCAGGAAAACGTCTTTTTGCGTCGCTAAAAACAATCTCAAAACATTGCCTACCTACAGGCAGATGACAAAATCATACAGTAGCTAACCAATGGAATCATCGTTAGTTCCACAAGACGAGGCAGACATTGTCCTTCACTACTATACCCCACATAAAACGTCAGCTCACACCAAAATAACGAGCTGTCATTGAACCACTTTCTAGGATCATCTATCCTGAAATCAATTCGAGGAATCTTCTCAGTTCGAACACAACGTCATCTGTTCACAATAGAAACGTCAAACAGTTCTTGTGGCTGAAAAACACAGCCAAACGATCAATAAACCAACGTAATCAACAGTATTGCGTATTGCATTATTGGAAATCACAATTTCTCATCTCACTATATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCATCATTGGGTACAAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TAGGTTTCTTTCTGTTCGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTCATCATTGGGTACAAAAGTTGGCCGCCATCAACAACTTGGCCACCATCACTCGGATACCACTCATCCACGTGCAGTTCCAAAAAACTTTGACCTAAAAACCATAACCGCCTGGAAACCCAGCACATATGCGAAGCTCGCTTGGCATCGAATCTCCGCCGGCGCTTCAAAGCAAAAAAAAAAACCACTAAATGAAAAGCTTACCAAACAGTTCAAATCAACAACAATATGAGACGAACAGAAAGAAACCTA</canonical_amplicon>
		<polymorphic_amplicon>TTCATCATTGGGTACAAAAGTTGGCCGCCATCAACAACTTGGCCACCATCACTCGGATACCACTCATCCACGTGCAGTTCCAAAAAACTTTGACCTAAAAACCATAACCGCCTGGAAACCCAGCACATATGCGAAGCTCGCTTGGCATCGAATCTCCGCCGGCGCTTCAAAGCAAAAAAAAAAACCACTAAATGARAAGCTTACCAAACAGTTCAAATCAACAACAATATGAGACGAACAGAAAGAAACCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30002</snp_id>
        <super_contig>c005001586.Contig1</super_contig>
        <contig_pos>4843</contig_pos>
        <strand></strand>
        <context>AATCATACAG[T/C]AGCTAACCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AACAATCTCAAAACATTGCCTACCTACAGGCAGATGACAAAATCATACAG</left_flank>
        <right_flank>AGCTAACCAATGGAATCATCGTTAGTTCCACAAGACGAGGCAGACATTGT</right_flank>
        <qual_score>33</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAACTACCAACAGTTGTCCCACCAGTCTTCTCCAAAGACGATGAACAGTTCCTACACGAACACAACATTAACCCAAAGAAATTGATGAAAACTCAGTGACAAACCGACGAATTTCATCATTGGGTACAAAAGTTGGCCGCCATCAACAACTTGGCCACCATCACTCGGATACCACTCATCCACGTGCAGTTCCAAAAAACTTTGACCTAAAAACCATAACCGCCTGGAAACCCAGCACATATGCGAAGCTCGCTTGGCATCGAATCTCCGCCGGCGCTTCAAAGCAAAAAAAAAAACCACTAAATGAAAAGCTTACCAAACAGTTCAAATCAACAACAATATGAGACGAACAGAAAGAAACCTACTCACAGTTTCCTTTCAACGGAACATAGCAACAGCTGAGAGACCACAATTTCGTGGCAGGAAAACGTCTTTTTGCGTCGCTAAAAACAATCTCAAAACATTGCCTACCTACAGGCAGATGACAAAATCATACAGTAGCTAACCAATGGAATCATCGTTAGTTCCACAAGACGAGGCAGACATTGTCCTTCACTACTATACCCCACATAAAACGTCAGCTCACACCAAAATAACGAGCTGTCATTGAACCACTTTCTAGGATCATCTATCCTGAAATCAATTCGAGGAATCTTCTCAGTTCGAACACAACGTCATCTGTTCACAATAGAAACGTCAAACAGTTCTTGTGGCTGAAAAACACAGCCAAACGATCAATAAACCAACGTAATCAACAGTATTGCGTATTGCATTATTGGAAATCACAATTTCTCATCTCACTATATTGGAAACTAAAATTAACCATCTAATGTTTTTAGTCAGCAACAAACCGCGAATGTTGCAATTTTATCATCACACATTCATGAGAAATCAGGAAAATTTATTTCATCATCAATCAAATTTTCCAAAACTCCCAAAAGGCTCAAACCACCTTGTAAAAATTAAACAAGAAAAAATTCGGAACTAGTAACATCAAAG</canonical>
            <polymorphic>CGAACTACCAACAGTTGTCCCACCAGTCTTCTCCAAAGACGATGAACAGTTCCTACACGAACACAACATTAACCCAAAGAAATTGATGAAAACTCAGTGACAAACCGACGAATTTCATCATTGGGTACAAAAGTTGGCCGCCATCAACAACTTGGCCACCATCACTCGGATACCACTCATCCACGTGCAGTTCCAAAAAACTTTGACCTAAAAACCATAACCGCCTGGAAACCCAGCACATATGCGAAGCTCGCTTGGCATCGAATCTCCGCCGGCGCTTCAAAGCAAAAAAAAAAACCACTAAATGAAAAGCTTACCAAACAGTTCAAATCAACAACAATATGAGACGAACAGAAAGAAACCTACTCACAGTTTCCTTTCAACGGAACATAGCAACAGCTGAGAGACCACAATTTCGTGGCAGGAAAACGTCTTTTTGCGTCGCTAAAAACAATCTCAAAACATTGCCTACCTACAGGCAGATGACAAAATCATACAGYAGCTAACCAATGGAATCATCGTTAGTTCCACAAGACGAGGCAGACATTGTCCTTCACTACTATACCCCACATAAAACGTCAGCTCACACCAAAATAACGAGCTGTCATTGAACCACTTTCTAGGATCATCTATCCTGAAATCAATTCGAGGAATCTTCTCAGTTCGAACACAACGTCATCTGTTCACAATAGAAACGTCAAACAGTTCTTGTGGCTGAAAAACACAGCCAAACGATCAATAAACCAACGTAATCAACAGTATTGCGTATTGCATTATTGGAAATCACAATTTCTCATCTCACTATATTGGAAACTAAAATTAACCATCTAATGTTTTTAGTCAGCAACAAACCGCGAATGTTGCAATTTTATCATCACACATTCATGAGAAATCAGGAAAATTTATTTCATCATCAATCAAATTTTCCAAAACTCCCAAAAGGCTCAAACCACCTTGTAAAAATTAAACAAGAAAAAATTCGGAACTAGTAACATCAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>275 242 206 127 54 48 35 13</canonical_bands>
                <polymorphic_bands>333 275 242 54 48 35 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACAGTTCAAATCAACAACAAT</pcr_primer_p1>
		<pcr_primer_p2>GGGGTATAGTAGTGAAGGACAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACAGTTCAAATCAACAACAATATGAGACGAACAGAAAGAAACCTACTCACAGTTTCCTTTCAACGGAACATAGCAACAGCTGAGAGACCACAATTTCGTGGCAGGAAAACGTCTTTTTGCGTCGCTAAAAACAATCTCAAAACATTGCCTACCTACAGGCAGATGACAAAATCATACAGTAGCTAACCAATGGAATCATCGTTAGTTCCACAAGACGAGGCAGACATTGTCCTTCACTACTATACCCC</canonical_amplicon>
		<polymorphic_amplicon>AAACAGTTCAAATCAACAACAATATGAGACGAACAGAAAGAAACCTACTCACAGTTTCCTTTCAACGGAACATAGCAACAGCTGAGAGACCACAATTTCGTGGCAGGAAAACGTCTTTTTGCGTCGCTAAAAACAATCTCAAAACATTGCCTACCTACAGGCAGATGACAAAATCATACAGYAGCTAACCAATGGAATCATCGTTAGTTCCACAAGACGAGGCAGACATTGTCCTTCACTACTATACCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30003</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>24381</contig_pos>
        <strand>+</strand>
        <context>ATCATTTATA[A/T]CAAACAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGATATATCGATACAGTTTGCCAGCTATCACTTATGAGGTATCATTTATA</left_flank>
        <right_flank>CAAACAAATTCAATCAGTTGAGTTTTAATTCGATATTTTCAGAAATCAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACAAACGAAGATGAATCTAGAAAAGATTTGGAAATGGACGAAGGACGTCCATCATCCCCATCCCCATCCATATTCTCCATCTATGGAGATGAACCAGGACCATCTACAGTAAGCCAACTTCCCAATTTGAATCAGTTTCCGAATTCCAATTTTCAGATCTGCGAGCAACCGGTTGGAGCTCAAGCCGACGTCTTCATCTCGTCCCTAGGAGAAAAGAAACTGACACAAATCAAGAAATATTTGGATTCCACTCCTCGAGAGGAGCATATGTACTTTTTATGGGTCAAGGATTCAGAGTGCAATAAGGTAAATGATTAGAAAGACTTCTCTATTATAAGTAGTAATTTTCAGATAACAGTGATATCGATAAAAACCTTGGAAAATCATTTGAAAAACGATAGTCGTGTGAGAAGAGTGAAATGGAGACATTTATCGTCTGAACGGGTATCGATATATCGATACAGTTTGCCAGCTATCACTTATGAGGTATCATTTATATCAAACAAATTCAATCAGTTGAGTTTTAATTCGATATTTTCAGAAATCAAAACTCTGCAAGGAATGCTTGTGCCGTCATAAGAAGTTGTGTCTTCTCCTCGTCTGGCTGGCCTTTGTCCTGTTTCTCTGTCTCGTCGTCGTCCTGGGATCCCTTTCTCCAGATGATCGATCCCATCCGTTTGCTCACAATCAATCGAAAACTATCCCGCCACAAGCTATGCTGATTGCACAACATCCACCACCACCACATCTAGCGAACGTTCTTATGAACGCTTCTCTTGTTGGATAACCGATTCTTATCGCAATTTCCTTCTATTTTTTCTTCTAAACTTCATGTTTGAATGCGGAAATAAATGATTAATGGGTACTCTGTAGTTATACGTATTTGAAGAATTCGTAAATTTATATACAAAACAGTTCATTGTTGCTTTATTGTTCAATGAAATTAGGGTTGTTGTTGGCTCCCCAAGAAAGTTCACAGGCCCAATCTTTTTTCATGTT</canonical>
            <polymorphic>TACAAACGAAGATGAATCTAGAAAAGATTTGGAAATGGACGAAGGACGTCCATCATCCCCATCCCCATCCATATTCTCCATCTATGGAGATGAACCAGGACCATCTACAGTAAGCCAACTTCCCAATTTGAATCAGTTTCCGAATTCCAATTTTCAGATCTGCGAGCAACCGGTTGGAGCTCAAGCCGACGTCTTCATCTCGTCCCTAGGAGAAAAGAAACTGACACAAATCAAGAAATATTTGGATTCCACTCCTCGAGAGGAGCATATGTACTTTTTATGGGTCAAGGATTCAGAGTGCAATAAGGTAAATGATTAGAAAGACTTCTCTATTATAAGTAGTAATTTTCAGATAACAGTGATATCGATAAAAACCTTGGAAAATCATTTGAAAAACGATAGTCGTGTGAGAAGAGTGAAATGGAGACATTTATCGTCTGAACGGGTATCGATATATCGATACAGTTTGCCAGCTATCACTTATGAGGTATCATTTATAWCAAACAAATTCAATCAGTTGAGTTTTAATTCGATATTTTCAGAAATCAAAACTCTGCAAGGAATGCTTGTGCCGTCATAAGAAGTTGTGTCTTCTCCTCGTCTGGCTGGCCTTTGTCCTGTTTCTCTGTCTCGTCGTCGTCCTGGGATCCCTTTCTCCAGATGATCGATCCCATCCGTTTGCTCACAATCAATCGAAAACTATCCCGCCACAAGCTATGCTGATTGCACAACATCCACCACCACCACATCTAGCGAACGTTCTTATGAACGCTTCTCTTGTTGGATAACCGATTCTTATCGCAATTTCCTTCTATTTTTTCTTCTAAACTTCATGTTTGAATGCGGAAATAAATGATTAATGGGTACTCTGTAGTTATACGTATTTGAAGAATTCGTAAATTTATATACAAAACAGTTCATTGTTGCTTTATTGTTCAATGAAATTAGGGTTGTTGTTGGCTCCCCAAGAAAGTTCACAGGCCCAATCTTTTTTCATGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCATTTGAAAAACGATAGTC</pcr_primer_p1>
		<pcr_primer_p2>GAGACAGAGAAACAGGACAAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAATCATTTGAAAAACGATAGTCGTGTGAGAAGAGTGAAATGGAGACATTTATCGTCTGAACGGGTATCGATATATCGATACAGTTTGCCAGCTATCACTTATGAGGTATCATTTATATCAAACAAATTCAATCAGTTGAGTTTTAATTCGATATTTTCAGAAATCAAAACTCTGCAAGGAATGCTTGTGCCGTCATAAGAAGTTGTGTCTTCTCCTCGTCTGGCTGGCCTTTGTCCTGTTTCTCTGTCTC</canonical_amplicon>
		<polymorphic_amplicon>AAATCATTTGAAAAACGATAGTCGTGTGAGAAGAGTGAAATGGAGACATTTATCGTCTGAACGGGTATCGATATATCGATACAGTTTGCCAGCTATCACTTATGAGGTATCATTTATAWCAAACAAATTCAATCAGTTGAGTTTTAATTCGATATTTTCAGAAATCAAAACTCTGCAAGGAATGCTTGTGCCGTCATAAGAAGTTGTGTCTTCTCCTCGTCTGGCTGGCCTTTGTCCTGTTTCTCTGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30004</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>26883</contig_pos>
        <strand>+</strand>
        <context>TGCCTGAATT[A/G]GTATTGGTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATGAAAACAGGCGTGAAATGCCTGATACAGGCGTGAAATGCCTGAATT</left_flank>
        <right_flank>GTATTGGTGACCAATGCCAAAAATAAATATTGGCGTGCCTTGCCAAACCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGATCCAGACATAATCACAAAAACTATTGATGGAAGACTAGTGGTAACTTCTCAAATAACAAATTCGTTCTAACATTTTATAATTCCCATTCTCTCCCTTTAAAATCAATTATCTGACTTCTTGTGAAACATACGACCAAACCGTCAACTGCCAAAATGTTTTTCTTGACATTTGGAGCATTTTATCAGTTGACAGTTTTCTGCTATCTTTCATAAGAACTGAGATAATCAAGATTGAAGCTACAGTGATGGGATGGTGAACCAAAAGTGAACCAAAAGGTAAATTCTATTCTCAAAAAGAAAGCGGCGTTTGACGCCGGTTTAAATTTTAAACAGGCAAATATTGCCTGCTTAAAAATTTCGCTGGCTTTTAATGCAAATCACGTTAAATTGAAAGGCCCATAGCTCTGGCACTGGCGGCCAGCAACACCCCTAATCAAAATTCATATTATGAAAACAGGCGTGAAATGCCTGATACAGGCGTGAAATGCCTGAATTGGTATTGGTGACCAATGCCAAAAATAAATATTGGCGTGCCTTGCCAAACCCAAAAATTTCTGGGCGATTGGCGCCAAGAAATGTCAATTTTAACAAGCCTAAATGAAATGAACCTTTCTCCGCATAGCAAAAATCAGAGGCTATCTATTTTGTTTATTTGGCAACCTCTCGAGAAAAACGGTTTTATTCGTATTCTCGTATCAGGTCGTCAATCAGCCCATAGTTAAACCGACCTGACGTATTCGGGAAGTGAAGATCAAGAAGAGAGAAAATCAATAAACAAGATGGTGCACTTTTGAAGAAAACTCCGAAGAGTCAGGGATTTTACAATATGTTCCCGATTATTGTTAAGGATGTTATTATTCATGCTGGTATGCAAAAATCGTAGCTGTGGAAGAGTAACGCCAATGGCCGTAGGTCCCACAACGACAACTACAGCAACCTTGAAATATGTTTATTTTCCGTATTAATTTTTTTGTTTTTCGGTTTTTATTGTCGAGT</canonical>
            <polymorphic>TCGATCCAGACATAATCACAAAAACTATTGATGGAAGACTAGTGGTAACTTCTCAAATAACAAATTCGTTCTAACATTTTATAATTCCCATTCTCTCCCTTTAAAATCAATTATCTGACTTCTTGTGAAACATACGACCAAACCGTCAACTGCCAAAATGTTTTTCTTGACATTTGGAGCATTTTATCAGTTGACAGTTTTCTGCTATCTTTCATAAGAACTGAGATAATCAAGATTGAAGCTACAGTGATGGGATGGTGAACCAAAAGTGAACCAAAAGGTAAATTCTATTCTCAAAAAGAAAGCGGCGTTTGACGCCGGTTTAAATTTTAAACAGGCAAATATTGCCTGCTTAAAAATTTCGCTGGCTTTTAATGCAAATCACGTTAAATTGAAAGGCCCATAGCTCTGGCACTGGCGGCCAGCAACACCCCTAATCAAAATTCATATTATGAAAACAGGCGTGAAATGCCTGATACAGGCGTGAAATGCCTGAATTRGTATTGGTGACCAATGCCAAAAATAAATATTGGCGTGCCTTGCCAAACCCAAAAATTTCTGGGCGATTGGCGCCAAGAAATGTCAATTTTAACAAGCCTAAATGAAATGAACCTTTCTCCGCATAGCAAAAATCAGAGGCTATCTATTTTGTTTATTTGGCAACCTCTCGAGAAAAACGGTTTTATTCGTATTCTCGTATCAGGTCGTCAATCAGCCCATAGTTAAACCGACCTGACGTATTCGGGAAGTGAAGATCAAGAAGAGAGAAAATCAATAAACAAGATGGTGCACTTTTGAAGAAAACTCCGAAGAGTCAGGGATTTTACAATATGTTCCCGATTATTGTTAAGGATGTTATTATTCATGCTGGTATGCAAAAATCGTAGCTGTGGAAGAGTAACGCCAATGGCCGTAGGTCCCACAACGACAACTACAGCAACCTTGAAATATGTTTATTTTCCGTATTAATTTTTTTGTTTTTCGGTTTTTATTGTCGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAATGCAAATCACGTTAAAT</pcr_primer_p1>
		<pcr_primer_p2>GAGAAAGGTTCATTTCATTTAGG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTAATGCAAATCACGTTAAATTGAAAGGCCCATAGCTCTGGCACTGGCGGCCAGCAACACCCCTAATCAAAATTCATATTATGAAAACAGGCGTGAAATGCCTGATACAGGCGTGAAATGCCTGAATTGGTATTGGTGACCAATGCCAAAAATAAATATTGGCGTGCCTTGCCAAACCCAAAAATTTCTGGGCGATTGGCGCCAAGAAATGTCAATTTTAACAAGCCTAAATGAAATGAACCTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>TTTAATGCAAATCACGTTAAATTGAAAGGCCCATAGCTCTGGCACTGGCGGCCAGCAACACCCCTAATCAAAATTCATATTATGAAAACAGGCGTGAAATGCCTGATACAGGCGTGAAATGCCTGAATTRGTATTGGTGACCAATGCCAAAAATAAATATTGGCGTGCCTTGCCAAACCCAAAAATTTCTGGGCGATTGGCGCCAAGAAATGTCAATTTTAACAAGCCTAAATGAAATGAACCTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30005</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>28694</contig_pos>
        <strand>+</strand>
        <context>CTCGAAGACT[C/T]CCTCGAAAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATAGGAATTGTATAGCAATCAATTACGAATCTTGAACTGCTCGAAGACT</left_flank>
        <right_flank>CCTCGAAAGCGGCAATGCTCAAATCCGAATAAACAAACGATGGCAATTTA</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATGCTCTTGCATTCATCGTGCTCATGCTCATGTTTTGAACAGCTTCTGAATAATATCCTAATTAGATTTTCACACTTTGTTTTGCTGTTTTTGGTCCTCTCTTGTTCTTTGTTTTCTCTGCAAATAAGGATTTTCGGTCCTCTCATTATTCTGGAAACCTCGCAGCTTTCTAATGGATGATCTCAATGAATCCGTCGATTACTTGTTATTGTATTTAATGTTGTCAACACTGAATCAAGCACCGTAATATGTTGTTCTTTGATCTCATCGCTAGCCTGCAAAACATGATATGCGGTCACGGCTACTAATTGGGACTGGATTTAGAACAAAAATATATGGAATTCTAAATACATAGATTCATGTCATTACACAAGGGGCGCAAATATATAAAAATACATGAGATAGAGAGAAGAACTCGTGAAGGAAGAGGGGGTTAAAATGGTACAAAATAGGAATTGTATAGCAATCAATTACGAATCTTGAACTGCTCGAAGACTCCCTCGAAAGCGGCAATGCTCAAATCCGAATAAACAAACGATGGCAATTTAGTGGGCTTGTCGGCCAGATAGAATTTTCCAGCTGGCAATGGATTCTTCGCAGCACGAACCAAGTTGGCGCCGGCATCGCTGAGAGAAGTGGTGAACGGACGAGCGAGTTTAATGTAGAATTGCTGGCGAGCCGGGAGATTTGACATGATATTAGTGTAGACAGTTCCCGGATGAACACTTGTCGCTGTCACATTTGGAAGATTTGCGAGAGAAATCGAAGAGGAGAGAGTTGCCAGACCGATCTTCGAGATGGCGTACTTTCCGGGACCAGAGACATCGGAAGGAACTAGAGACTTTTGCCAATCCGACACTTTTTGTGGGTTGAAGAAGCGAAGACCAAGGGGAGTGGAATTGTGGAATCTGTAAAGAATTGCAGGCGTTTTTCACAATTATTGATTCTTCACTCACTTGACAAAAATCGAAGTACTGAAAACAAAGTGAAGCGGACGG</canonical>
            <polymorphic>GAATGCTCTTGCATTCATCGTGCTCATGCTCATGTTTTGAACAGCTTCTGAATAATATCCTAATTAGATTTTCACACTTTGTTTTGCTGTTTTTGGTCCTCTCTTGTTCTTTGTTTTCTCTGCAAATAAGGATTTTCGGTCCTCTCATTATTCTGGAAACCTCGCAGCTTTCTAATGGATGATCTCAATGAATCCGTCGATTACTTGTTATTGTATTTAATGTTGTCAACACTGAATCAAGCACCGTAATATGTTGTTCTTTGATCTCATCGCTAGCCTGCAAAACATGATATGCGGTCACGGCTACTAATTGGGACTGGATTTAGAACAAAAATATATGGAATTCTAAATACATAGATTCATGTCATTACACAAGGGGCGCAAATATATAAAAATACATGAGATAGAGAGAAGAACTCGTGAAGGAAGAGGGGGTTAAAATGGTACAAAATAGGAATTGTATAGCAATCAATTACGAATCTTGAACTGCTCGAAGACTYCCTCGAAAGCGGCAATGCTCAAATCCGAATAAACAAACGATGGCAATTTAGTGGGCTTGTCGGCCAGATAGAATTTTCCAGCTGGCAATGGATTCTTCGCAGCACGAACCAAGTTGGCGCCGGCATCGCTGAGAGAAGTGGTGAACGGACGAGCGAGTTTAATGTAGAATTGCTGGCGAGCCGGGAGATTTGACATGATATTAGTGTAGACAGTTCCCGGATGAACACTTGTCGCTGTCACATTTGGAAGATTTGCGAGAGAAATCGAAGAGGAGAGAGTTGCCAGACCGATCTTCGAGATGGCGTACTTTCCGGGACCAGAGACATCGGAAGGAACTAGAGACTTTTGCCAATCCGACACTTTTTGTGGGTTGAAGAAGCGAAGACCAAGGGGAGTGGAATTGTGGAATCTGTAAAGAATTGCAGGCGTTTTTCACAATTATTGATTCTTCACTCACTTGACAAAAATCGAAGTACTGAAAACAAAGTGAAGCGGACGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>316 190 123 120 95 55 44 38 19</canonical_bands>
                <polymorphic_bands>316 190 123 120 114 55 44 38</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGGTTAAAATGGTACAAAATAG</pcr_primer_p1>
		<pcr_primer_p2>GCCAGCAATTCTACATTAAACT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGGGTTAAAATGGTACAAAATAGGAATTGTATAGCAATCAATTACGAATCTTGAACTGCTCGAAGACTCCCTCGAAAGCGGCAATGCTCAAATCCGAATAAACAAACGATGGCAATTTAGTGGGCTTGTCGGCCAGATAGAATTTTCCAGCTGGCAATGGATTCTTCGCAGCACGAACCAAGTTGGCGCCGGCATCGCTGAGAGAAGTGGTGAACGGACGAGCGAGTTTAATGTAGAATTGCTGGC</canonical_amplicon>
		<polymorphic_amplicon>GGGGTTAAAATGGTACAAAATAGGAATTGTATAGCAATCAATTACGAATCTTGAACTGCTCGAAGACTYCCTCGAAAGCGGCAATGCTCAAATCCGAATAAACAAACGATGGCAATTTAGTGGGCTTGTCGGCCAGATAGAATTTTCCAGCTGGCAATGGATTCTTCGCAGCACGAACCAAGTTGGCGCCGGCATCGCTGAGAGAAGTGGTGAACGGACGAGCGAGTTTAATGTAGAATTGCTGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30006</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>35772</contig_pos>
        <strand>+</strand>
        <context>AGCGAAAAAT[A/G]ATATAAACAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAGTTTGAAGGCTATCTGAAACTCATGATTTAGTAATAGAGCGAAAAAT</left_flank>
        <right_flank>ATATAAACACCATTCTCTGTGGTTTCACAGAGTTTTGTAGTGCTGAAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAGCACCACCGTAAAACCGTAAAACCGTAAAACGTATACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGCAAAAGATATCAAAAAGTGGTAAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATACCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGTTCCGGGTGTCGTTCTATTAAGGTTTTACGGTATCTCATTTTTGCCAGAGATATCAAAAAATGGCCAATTGTCGAAATGTTTATCATAATGTCGCCAATATTTTATTAGTTGGCAGATTTTTGATATGTCTCATATGAACTGAGATAGCTGAGCTCAAAGTGCACGTATAAAGTAGGCTCTCTATCAGAGCAAATACGGTCTACCGTAGTCTACCGGAATAGTAGTTTGAAGGCTATCTGAAACTCATGATTTAGTAATAGAGCGAAAAATAATATAAACACCATTCTCTGTGGTTTCACAGAGTTTTGTAGTGCTGAAATTTTTCCTAGGGCACTTCTAAAGAAAACTCGGCAAACAATCAACTGCGTTAACAATTTCTAGAAGCAAACTTTAAATATGTTCACAATTTGAAACATAAGTCCTTCGAACTAACCTGCTCGAGGAGCACGATCTCAGCATCCTTGGCAGCCTCATTTCCCTCGTTCTTGAGCTCATTGAGACGATAAGCAGCTCCGAGAGCCGTTGGCGCCGCACCAATACACACGATCTTCATCCTATAAGAATTTTCTGAGCAAAAAAACCTGGGGATAATAGCCTCATAAATTACTGAAAACGAATTAAAAGAGAAGCAAGAAAAGGATCTTGTTCATAAAACAAATGAAGAAAGCGAAAAGAGAAAATGGAATCGAAAACGGGAGAGAAATGGATTTTGACCTAGATCCTGAAGTCGAGAGATCGCATTGATAAGGGGCAAAATATCGGATCGGTGAG</canonical>
            <polymorphic>TTTGAGCACCACCGTAAAACCGTAAAACCGTAAAACGTATACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGCAAAAGATATCAAAAAGTGGTAAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATACCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGTTCCGGGTGTCGTTCTATTAAGGTTTTACGGTATCTCATTTTTGCCAGAGATATCAAAAAATGGCCAATTGTCGAAATGTTTATCATAATGTCGCCAATATTTTATTAGTTGGCAGATTTTTGATATGTCTCATATGAACTGAGATAGCTGAGCTCAAAGTGCACGTATAAAGTAGGCTCTCTATCAGAGCAAATACGGTCTACCGTAGTCTACCGGAATAGTAGTTTGAAGGCTATCTGAAACTCATGATTTAGTAATAGAGCGAAAAATRATATAAACACCATTCTCTGTGGTTTCACAGAGTTTTGTAGTGCTGAAATTTTTCCTAGGGCACTTCTAAAGAAAACTCGGCAAACAATCAACTGCGTTAACAATTTCTAGAAGCAAACTTTAAATATGTTCACAATTTGAAACATAAGTCCTTCGAACTAACCTGCTCGAGGAGCACGATCTCAGCATCCTTGGCAGCCTCATTTCCCTCGTTCTTGAGCTCATTGAGACGATAAGCAGCTCCGAGAGCCGTTGGCGCCGCACCAATACACACGATCTTCATCCTATAAGAATTTTCTGAGCAAAAAAACCTGGGGATAATAGCCTCATAAATTACTGAAAACGAATTAAAAGAGAAGCAAGAAAAGGATCTTGTTCATAAAACAAATGAAGAAAGCGAAAAGAGAAAATGGAATCGAAAACGGGAGAGAAATGGATTTTGACCTAGATCCTGAAGTCGAGAGATCGCATTGATAAGGGGCAAAATATCGGATCGGTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCACGTATAAAGTAGGCTCTCT</pcr_primer_p1>
		<pcr_primer_p2>TTTAAAGTTTGCTTCTAGAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>GCACGTATAAAGTAGGCTCTCTATCAGAGCAAATACGGTCTACCGTAGTCTACCGGAATAGTAGTTTGAAGGCTATCTGAAACTCATGATTTAGTAATAGAGCGAAAAATAATATAAACACCATTCTCTGTGGTTTCACAGAGTTTTGTAGTGCTGAAATTTTTCCTAGGGCACTTCTAAAGAAAACTCGGCAAACAATCAACTGCGTTAACAATTTCTAGAAGCAAACTTTAAA</canonical_amplicon>
		<polymorphic_amplicon>GCACGTATAAAGTAGGCTCTCTATCAGAGCAAATACGGTCTACCGTAGTCTACCGGAATAGTAGTTTGAAGGCTATCTGAAACTCATGATTTAGTAATAGAGCGAAAAATRATATAAACACCATTCTCTGTGGTTTCACAGAGTTTTGTAGTGCTGAAATTTTTCCTAGGGCACTTCTAAAGAAAACTCGGCAAACAATCAACTGCGTTAACAATTTCTAGAAGCAAACTTTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30007</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>35918</contig_pos>
        <strand>+</strand>
        <context>TTTGAAACAT[A/G]AGTCCTTCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTAACAATTTCTAGAAGCAAACTTTAAATATGTTCACAATTTGAAACAT</left_flank>
        <right_flank>AGTCCTTCGAACTAACCTGCTCGAGGAGCACGATCTCAGCATCCTTGGCA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATACCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGTTCCGGGTGTCGTTCTATTAAGGTTTTACGGTATCTCATTTTTGCCAGAGATATCAAAAAATGGCCAATTGTCGAAATGTTTATCATAATGTCGCCAATATTTTATTAGTTGGCAGATTTTTGATATGTCTCATATGAACTGAGATAGCTGAGCTCAAAGTGCACGTATAAAGTAGGCTCTCTATCAGAGCAAATACGGTCTACCGTAGTCTACCGGAATAGTAGTTTGAAGGCTATCTGAAACTCATGATTTAGTAATAGAGCGAAAAATAATATAAACACCATTCTCTGTGGTTTCACAGAGTTTTGTAGTGCTGAAATTTTTCCTAGGGCACTTCTAAAGAAAACTCGGCAAACAATCAACTGCGTTAACAATTTCTAGAAGCAAACTTTAAATATGTTCACAATTTGAAACATAAGTCCTTCGAACTAACCTGCTCGAGGAGCACGATCTCAGCATCCTTGGCAGCCTCATTTCCCTCGTTCTTGAGCTCATTGAGACGATAAGCAGCTCCGAGAGCCGTTGGCGCCGCACCAATACACACGATCTTCATCCTATAAGAATTTTCTGAGCAAAAAAACCTGGGGATAATAGCCTCATAAATTACTGAAAACGAATTAAAAGAGAAGCAAGAAAAGGATCTTGTTCATAAAACAAATGAAGAAAGCGAAAAGAGAAAATGGAATCGAAAACGGGAGAGAAATGGATTTTGACCTAGATCCTGAAGTCGAGAGATCGCATTGATAAGGGGCAAAATATCGGATCGGTGAGAGTGAGAATTCAATGTGTGTATGTTATTCTCAAAAGGAGGGATAATGGGCGGAGCCTATTTTGAGAAGGAGAAGACCGTAGAACCTGTCCTTTTGTACTCTTCACAGACTTCTTCACTACGAAAATCTTTCTTCCCACCGCTCTTT</canonical>
            <polymorphic>GATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATACCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGTTCCGGGTGTCGTTCTATTAAGGTTTTACGGTATCTCATTTTTGCCAGAGATATCAAAAAATGGCCAATTGTCGAAATGTTTATCATAATGTCGCCAATATTTTATTAGTTGGCAGATTTTTGATATGTCTCATATGAACTGAGATAGCTGAGCTCAAAGTGCACGTATAAAGTAGGCTCTCTATCAGAGCAAATACGGTCTACCGTAGTCTACCGGAATAGTAGTTTGAAGGCTATCTGAAACTCATGATTTAGTAATAGAGCGAAAAATAATATAAACACCATTCTCTGTGGTTTCACAGAGTTTTGTAGTGCTGAAATTTTTCCTAGGGCACTTCTAAAGAAAACTCGGCAAACAATCAACTGCGTTAACAATTTCTAGAAGCAAACTTTAAATATGTTCACAATTTGAAACATRAGTCCTTCGAACTAACCTGCTCGAGGAGCACGATCTCAGCATCCTTGGCAGCCTCATTTCCCTCGTTCTTGAGCTCATTGAGACGATAAGCAGCTCCGAGAGCCGTTGGCGCCGCACCAATACACACGATCTTCATCCTATAAGAATTTTCTGAGCAAAAAAACCTGGGGATAATAGCCTCATAAATTACTGAAAACGAATTAAAAGAGAAGCAAGAAAAGGATCTTGTTCATAAAACAAATGAAGAAAGCGAAAAGAGAAAATGGAATCGAAAACGGGAGAGAAATGGATTTTGACCTAGATCCTGAAGTCGAGAGATCGCATTGATAAGGGGCAAAATATCGGATCGGTGAGAGTGAGAATTCAATGTGTGTATGTTATTCTCAAAAGGAGGGATAATGGGCGGAGCCTATTTTGAGAAGGAGAAGACCGTAGAACCTGTCCTTTTGTACTCTTCACAGACTTCTTCACTACGAAAATCTTTCTTCCCACCGCTCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGGGCACTTCTAAAGAAAACT</pcr_primer_p1>
		<pcr_primer_p2>GCTCAGAAAATTCTTATAGGATGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTAGGGCACTTCTAAAGAAAACTCGGCAAACAATCAACTGCGTTAACAATTTCTAGAAGCAAACTTTAAATATGTTCACAATTTGAAACATAAGTCCTTCGAACTAACCTGCTCGAGGAGCACGATCTCAGCATCCTTGGCAGCCTCATTTCCCTCGTTCTTGAGCTCATTGAGACGATAAGCAGCTCCGAGAGCCGTTGGCGCCGCACCAATACACACGATCTTCATCCTATAAGAATTTTCTGAGC</canonical_amplicon>
		<polymorphic_amplicon>CTAGGGCACTTCTAAAGAAAACTCGGCAAACAATCAACTGCGTTAACAATTTCTAGAAGCAAACTTTAAATATGTTCACAATTTGAAACATRAGTCCTTCGAACTAACCTGCTCGAGGAGCACGATCTCAGCATCCTTGGCAGCCTCATTTCCCTCGTTCTTGAGCTCATTGAGACGATAAGCAGCTCCGAGAGCCGTTGGCGCCGCACCAATACACACGATCTTCATCCTATAAGAATTTTCTGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30008</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>36083</contig_pos>
        <strand>+</strand>
        <context>GCAAAAAAAC[C/T]TGGGGATAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACCAATACACACGATCTTCATCCTATAAGAATTTTCTGAGCAAAAAAAC</left_flank>
        <right_flank>TGGGGATAATAGCCTCATAAATTACTGAAAACGAATTAAAAGAGAAGCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATAATGTCGCCAATATTTTATTAGTTGGCAGATTTTTGATATGTCTCATATGAACTGAGATAGCTGAGCTCAAAGTGCACGTATAAAGTAGGCTCTCTATCAGAGCAAATACGGTCTACCGTAGTCTACCGGAATAGTAGTTTGAAGGCTATCTGAAACTCATGATTTAGTAATAGAGCGAAAAATAATATAAACACCATTCTCTGTGGTTTCACAGAGTTTTGTAGTGCTGAAATTTTTCCTAGGGCACTTCTAAAGAAAACTCGGCAAACAATCAACTGCGTTAACAATTTCTAGAAGCAAACTTTAAATATGTTCACAATTTGAAACATAAGTCCTTCGAACTAACCTGCTCGAGGAGCACGATCTCAGCATCCTTGGCAGCCTCATTTCCCTCGTTCTTGAGCTCATTGAGACGATAAGCAGCTCCGAGAGCCGTTGGCGCCGCACCAATACACACGATCTTCATCCTATAAGAATTTTCTGAGCAAAAAAACCTGGGGATAATAGCCTCATAAATTACTGAAAACGAATTAAAAGAGAAGCAAGAAAAGGATCTTGTTCATAAAACAAATGAAGAAAGCGAAAAGAGAAAATGGAATCGAAAACGGGAGAGAAATGGATTTTGACCTAGATCCTGAAGTCGAGAGATCGCATTGATAAGGGGCAAAATATCGGATCGGTGAGAGTGAGAATTCAATGTGTGTATGTTATTCTCAAAAGGAGGGATAATGGGCGGAGCCTATTTTGAGAAGGAGAAGACCGTAGAACCTGTCCTTTTGTACTCTTCACAGACTTCTTCACTACGAAAATCTTTCTTCCCACCGCTCTTTTCCGACCGCCCTCCGGTTTTCACTTTCATTCTGTTGTGGATGAACATCAAGTGTAGATTTTTCTTCAAAGGACAAAAACTCTAGGATTCAGATCAAAAAGAGGATCCGTGCCAGCTTTTTAGATTACAATCTTTTCTCCTTGTTCTACCCCGGACGGACGCGGAA</canonical>
            <polymorphic>TCATAATGTCGCCAATATTTTATTAGTTGGCAGATTTTTGATATGTCTCATATGAACTGAGATAGCTGAGCTCAAAGTGCACGTATAAAGTAGGCTCTCTATCAGAGCAAATACGGTCTACCGTAGTCTACCGGAATAGTAGTTTGAAGGCTATCTGAAACTCATGATTTAGTAATAGAGCGAAAAATAATATAAACACCATTCTCTGTGGTTTCACAGAGTTTTGTAGTGCTGAAATTTTTCCTAGGGCACTTCTAAAGAAAACTCGGCAAACAATCAACTGCGTTAACAATTTCTAGAAGCAAACTTTAAATATGTTCACAATTTGAAACATAAGTCCTTCGAACTAACCTGCTCGAGGAGCACGATCTCAGCATCCTTGGCAGCCTCATTTCCCTCGTTCTTGAGCTCATTGAGACGATAAGCAGCTCCGAGAGCCGTTGGCGCCGCACCAATACACACGATCTTCATCCTATAAGAATTTTCTGAGCAAAAAAACYTGGGGATAATAGCCTCATAAATTACTGAAAACGAATTAAAAGAGAAGCAAGAAAAGGATCTTGTTCATAAAACAAATGAAGAAAGCGAAAAGAGAAAATGGAATCGAAAACGGGAGAGAAATGGATTTTGACCTAGATCCTGAAGTCGAGAGATCGCATTGATAAGGGGCAAAATATCGGATCGGTGAGAGTGAGAATTCAATGTGTGTATGTTATTCTCAAAAGGAGGGATAATGGGCGGAGCCTATTTTGAGAAGGAGAAGACCGTAGAACCTGTCCTTTTGTACTCTTCACAGACTTCTTCACTACGAAAATCTTTCTTCCCACCGCTCTTTTCCGACCGCCCTCCGGTTTTCACTTTCATTCTGTTGTGGATGAACATCAAGTGTAGATTTTTCTTCAAAGGACAAAAACTCTAGGATTCAGATCAAAAAGAGGATCCGTGCCAGCTTTTTAGATTACAATCTTTTCTCCTTGTTCTACCCCGGACGGACGCGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>500 485 15</canonical_bands>
                <polymorphic_bands>985 15</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>484 243 135 121 17</canonical_bands>
                <polymorphic_bands>605 243 135 17</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTGAGCTCATTGAGACGATA</pcr_primer_p1>
		<pcr_primer_p2>GACTTCAGGATCTAGGTCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTTGAGCTCATTGAGACGATAAGCAGCTCCGAGAGCCGTTGGCGCCGCACCAATACACACGATCTTCATCCTATAAGAATTTTCTGAGCAAAAAAACCTGGGGATAATAGCCTCATAAATTACTGAAAACGAATTAAAAGAGAAGCAAGAAAAGGATCTTGTTCATAAAACAAATGAAGAAAGCGAAAAGAGAAAATGGAATCGAAAACGGGAGAGAAATGGATTTTGACCTAGATCCTGAAGTC</canonical_amplicon>
		<polymorphic_amplicon>CTTGAGCTCATTGAGACGATAAGCAGCTCCGAGAGCCGTTGGCGCCGCACCAATACACACGATCTTCATCCTATAAGAATTTTCTGAGCAAAAAAACYTGGGGATAATAGCCTCATAAATTACTGAAAACGAATTAAAAGAGAAGCAAGAAAAGGATCTTGTTCATAAAACAAATGAAGAAAGCGAAAAGAGAAAATGGAATCGAAAACGGGAGAGAAATGGATTTTGACCTAGATCCTGAAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30009</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>91369</contig_pos>
        <strand>+</strand>
        <context>AGACCTGCAA[C/T]GTCCTTGTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAGCAGCTGATATAATGATATTTTCAGGATTTGACTACAAGACCTGCAA</left_flank>
        <right_flank>GTCCTTGTCGCTCTTGAACAGCAATCACCAGAAATCGCCGCTGGAGTTCA</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCGAGTAACCTAGTTACTGCGAGCATGAATATCGTTTTGTGTTATTACGAGAGAATCGTTGGTGAACTCGTTTCGTTCGCTAATGTTCTCTCGTTGTTTCGCCTAATCATGTCTTTACTTACAGGCTCTGCGGGTGTTGGATGAAAGGGGATGACGCTTGTCGCAACAATATGTTTTCTTACCTGTTACTATGGTTACTTTGATTACAGAAACGGTGACTAAAACGGGTATGATCATGTTGTGCGTGAGATCACCTCGAAAGCCCACGTTGACTATCAAGTTCTCGTTCGTAACGTCGTCAAGAAAATCGGATACGATGACTCGTCCAAAGGTAAGAAGACTAAAATAGACATTGTTTGCGGAAGGATTGCTATCAACTGACAGTGAACCGTTATCAGCGCGTGGACGGAAAACTCCAGTGATGTTCCCTTGGCGAACTCTACTTCCCTAGCAGCTGATATAATGATATTTTCAGGATTTGACTACAAGACCTGCAACGTCCTTGTCGCTCTTGAACAGCAATCACCAGAAATCGCCGCTGGAGTTCATATGGACAAGAGCAGCGATGATGTTGGAGCTGGAGATCAGGGAATCATGTTTGGGTATGCTACCGATGAAACTGAGGAGGCTATGCCATTGACTCTTCTTCTGTCTCACAAGTTGAACTACAAGCTCCACGAGCTCCGTCGCTCCGGAGAACTCGGATGGGTTCGCCCAGATTCCAAGACTCAAGTCACTATCGAGTACGCTTCCGAGGGAGGTGCCTGTGTTCCACTTCGTGTCCACACTGTTGTCATCTCCACTCAACACTCTCCAGATATTGCGCTCGAGGATTTGAGAAAGGAACTCATCGAGAAGGTAAATCTCATATTTTAAAGTCCGTTCTTATTCCTTCGTTTTTTTACAGGTCATCAAGGCTGTTATCCCAGCTAACCTCATCGATGATGACATCATCTACCACATCAACCCATGTGGATCTTTCATTGTCGGAGGACCAA</canonical>
            <polymorphic>CATCGAGTAACCTAGTTACTGCGAGCATGAATATCGTTTTGTGTTATTACGAGAGAATCGTTGGTGAACTCGTTTCGTTCGCTAATGTTCTCTCGTTGTTTCGCCTAATCATGTCTTTACTTACAGGCTCTGCGGGTGTTGGATGAAAGGGGATGACGCTTGTCGCAACAATATGTTTTCTTACCTGTTACTATGGTTACTTTGATTACAGAAACGGTGACTAAAACGGGTATGATCATGTTGTGCGTGAGATCACCTCGAAAGCCCACGTTGACTATCAAGTTCTCGTTCGTAACGTCGTCAAGAAAATCGGATACGATGACTCGTCCAAAGGTAAGAAGACTAAAATAGACATTGTTTGCGGAAGGATTGCTATCAACTGACAGTGAACCGTTATCAGCGCGTGGACGGAAAACTCCAGTGATGTTCCCTTGGCGAACTCTACTTCCCTAGCAGCTGATATAATGATATTTTCAGGATTTGACTACAAGACCTGCAAYGTCCTTGTCGCTCTTGAACAGCAATCACCAGAAATCGCCGCTGGAGTTCATATGGACAAGAGCAGCGATGATGTTGGAGCTGGAGATCAGGGAATCATGTTTGGGTATGCTACCGATGAAACTGAGGAGGCTATGCCATTGACTCTTCTTCTGTCTCACAAGTTGAACTACAAGCTCCACGAGCTCCGTCGCTCCGGAGAACTCGGATGGGTTCGCCCAGATTCCAAGACTCAAGTCACTATCGAGTACGCTTCCGAGGGAGGTGCCTGTGTTCCACTTCGTGTCCACACTGTTGTCATCTCCACTCAACACTCTCCAGATATTGCGCTCGAGGATTTGAGAAAGGAACTCATCGAGAAGGTAAATCTCATATTTTAAAGTCCGTTCTTATTCCTTCGTTTTTTTACAGGTCATCAAGGCTGTTATCCCAGCTAACCTCATCGATGATGACATCATCTACCACATCAACCCATGTGGATCTTTCATTGTCGGAGGACCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>501 268 204 27</canonical_bands>
                <polymorphic_bands>705 268 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTCCCTAGCAGCTGATATAAT</pcr_primer_p1>
		<pcr_primer_p2>GAGCTTGTAGTTCAACTTGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>ACTTCCCTAGCAGCTGATATAATGATATTTTCAGGATTTGACTACAAGACCTGCAACGTCCTTGTCGCTCTTGAACAGCAATCACCAGAAATCGCCGCTGGAGTTCATATGGACAAGAGCAGCGATGATGTTGGAGCTGGAGATCAGGGAATCATGTTTGGGTATGCTACCGATGAAACTGAGGAGGCTATGCCATTGACTCTTCTTCTGTCTCACAAGTTGAACTACAAGCTC</canonical_amplicon>
		<polymorphic_amplicon>ACTTCCCTAGCAGCTGATATAATGATATTTTCAGGATTTGACTACAAGACCTGCAAYGTCCTTGTCGCTCTTGAACAGCAATCACCAGAAATCGCCGCTGGAGTTCATATGGACAAGAGCAGCGATGATGTTGGAGCTGGAGATCAGGGAATCATGTTTGGGTATGCTACCGATGAAACTGAGGAGGCTATGCCATTGACTCTTCTTCTGTCTCACAAGTTGAACTACAAGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30010</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>95162</contig_pos>
        <strand>+</strand>
        <context>TCCGAAACTC[A/G]AAAAAAAGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCATTTTTTACCTAGTGGTTCTTAAAGAAATGCTCTTCTTCCGAAACTC</left_flank>
        <right_flank>AAAAAAAGATGTCAACTGTTTTACGATTCTATCATAAAGATTGTGTAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGATATACTCGATTTTAACAGTCCGGCTAATAGTGCGCCACCCTGCGAATATACATGTGGTTGATTTAAGGCTTTCATTAATAATCAAGTTCGAAATTCAAATCACATCATTTTGAGAGACCGACTAGATTCACCAAACTACATAAAAATCAAACTGCTGAAACAAAATTTTTCGCAAACAAACCTGAACAGATGATCTCCGAATAGCATGTTTAGTGCGGGAATGTGAACTTCCAGAGTGCATATCCGATTGCTGGCCTGTTTGAATGTTAGGAGGAGTGTGTCGTGGGCCTGGAATGAGTTGATTCAAGGTTAGCCTATCGTCAAAAAAATAATGCTGAATTATACTAACAAGTTTATTTGAGAACTATTTGAAACGGTGAAAACTTTTGATGTGACTTGAAATTCGAAAGGAAATGTATTATTGGGAAGAATACATTTCAATCGAACCATTTTTTACCTAGTGGTTCTTAAAGAAATGCTCTTCTTCCGAAACTCAAAAAAAAGATGTCAACTGTTTTACGATTCTATCATAAAGATTGTGTAAAGAATACTGTACTGGAAATTTATTTTGACAAAAAATACATATTGGAAAAATCTTCATTTCAGTGATATTTTGAAAAAGCTTCAGCGCTTCAGCGCGAAATTAACGTCTGAAATTCCAGCCAAATTTTCAAAGTCGATATTTTGACCCCAAACTTTGACAAAATGTTTCCTATAGTTTTCTCCAGTTTTCCCCAAAGTTTCAGCCAGATTGGAACACTCTCCGAGTTTTCGCGGAGTTTTTTTCCTTATTTGCCGACTCCCTGAATAACCCCATTAGTTTTTTGCAATCTATCCGAGGAAACCACTTCTTGATATCTTCAATAGATGACGAGAAAAATTGGTTTCTATCAGAGACGTAGTTCAAGTTTGAGACAAGTTAGAATTCCAAAACCCATTCATGAAAATTTTGCTTGAAAGCTGGCTACTGTGATAAAAGCTAAACTCACTTTCACG</canonical>
            <polymorphic>GAGATATACTCGATTTTAACAGTCCGGCTAATAGTGCGCCACCCTGCGAATATACATGTGGTTGATTTAAGGCTTTCATTAATAATCAAGTTCGAAATTCAAATCACATCATTTTGAGAGACCGACTAGATTCACCAAACTACATAAAAATCAAACTGCTGAAACAAAATTTTTCGCAAACAAACCTGAACAGATGATCTCCGAATAGCATGTTTAGTGCGGGAATGTGAACTTCCAGAGTGCATATCCGATTGCTGGCCTGTTTGAATGTTAGGAGGAGTGTGTCGTGGGCCTGGAATGAGTTGATTCAAGGTTAGCCTATCGTCAAAAAAATAATGCTGAATTATACTAACAAGTTTATTTGAGAACTATTTGAAACGGTGAAAACTTTTGATGTGACTTGAAATTCGAAAGGAAATGTATTATTGGGAAGAATACATTTCAATCGAACCATTTTTTACCTAGTGGTTCTTAAAGAAATGCTCTTCTTCCGAAACTCRAAAAAAAGATGTCAACTGTTTTACGATTCTATCATAAAGATTGTGTAAAGAATACTGTACTGGAAATTTATTTTGACAAAAAATACATATTGGAAAAATCTTCATTTCAGTGATATTTTGAAAAAGCTTCAGCGCTTCAGCGCGAAATTAACGTCTGAAATTCCAGCCAAATTTTCAAAGTCGATATTTTGACCCCAAACTTTGACAAAATGTTTCCTATAGTTTTCTCCAGTTTTCCCCAAAGTTTCAGCCAGATTGGAACACTCTCCGAGTTTTCGCGGAGTTTTTTTCCTTATTTGCCGACTCCCTGAATAACCCCATTAGTTTTTTGCAATCTATCCGAGGAAACCACTTCTTGATATCTTCAATAGATGACGAGAAAAATTGGTTTCTATCAGAGACGTAGTTCAAGTTTGAGACAAGTTAGAATTCCAAAACCCATTCATGAAAATTTTGCTTGAAAGCTGGCTACTGTGATAAAAGCTAAACTCACTTTCACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAACTTTTGATGTGACTTG</pcr_primer_p1>
		<pcr_primer_p2>TGAAGCTTTTTCAAAATATCACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAAAACTTTTGATGTGACTTGAAATTCGAAAGGAAATGTATTATTGGGAAGAATACATTTCAATCGAACCATTTTTTACCTAGTGGTTCTTAAAGAAATGCTCTTCTTCCGAAACTCAAAAAAAAGATGTCAACTGTTTTACGATTCTATCATAAAGATTGTGTAAAGAATACTGTACTGGAAATTTATTTTGACAAAAAATACATATTGGAAAAATCTTCATTTCAGTGATATTTTGAAAAAGCTTCA</canonical_amplicon>
		<polymorphic_amplicon>TGAAAACTTTTGATGTGACTTGAAATTCGAAAGGAAATGTATTATTGGGAAGAATACATTTCAATCGAACCATTTTTTACCTAGTGGTTCTTAAAGAAATGCTCTTCTTCCGAAACTCRAAAAAAAGATGTCAACTGTTTTACGATTCTATCATAAAGATTGTGTAAAGAATACTGTACTGGAAATTTATTTTGACAAAAAATACATATTGGAAAAATCTTCATTTCAGTGATATTTTGAAAAAGCTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30011</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>100993</contig_pos>
        <strand>+</strand>
        <context>CTTGGAAAAT[A/G]CAAAAGTCCM</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAAT</left_flank>
        <right_flank>CAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATACTGTGATTTCTACTAAAAATAGATTTCCGAGTATAAAAAAAGGCATCGAGTTGTTGGTATACAAGAAGCAATAGAAAACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCGCATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGTTGAAGTACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGATTCTAATACAATTTGAATGAAAGTTAACCGAACTTTTTGAAGAAAACTATCCGGGAAAAATGACCTTAAATGGAAGGGTCCCTAGAATAGAAGGGCCCTCCAGAGGTTCTAGTAAGGTTTTACACGCCTTTCAAAATTCATAAAGAAACCTTCACTCGAAATCTATAGATTTGCAGAAATTTTTTGAAAAAAAGCTGTTTCGCAAATTTGATGAAAAGAGAAGGCCTATTTTTGTTCCCTATTCTTTCTTTATTAGAAATAATAAATATGTATATATTGTCGAAATAAAAAAAAACTGGGACTTGAGAAGTGAAAACCGTCGCTTTTTTGATC</canonical>
            <polymorphic>TGATACTGTGATTTCTACTAAAAATAGATTTCCGAGTATAAAAAAAGGCATCGAGTTGTTGGTATACAAGAAGCAATAGAAAACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCGCATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATRCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGTTGAAGTACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGATTCTAATACAATTTGAATGAAAGTTAACCGAACTTTTTGAAGAAAACTATCCGGGAAAAATGACCTTAAATGGAAGGGTCCCTAGAATAGAAGGGCCCTCCAGAGGTTCTAGTAAGGTTTTACACGCCTTTCAAAATTCATAAAGAAACCTTCACTCGAAATCTATAGATTTGCAGAAATTTTTTGAAAAAAAGCTGTTTCGCAAATTTGATGAAAAGAGAAGGCCTATTTTTGTTCCCTATTCTTTCTTTATTAGAAATAATAAATATGTATATATTGTCGAAATAAAAAAAAACTGGGACTTGAGAAGTGAAAACCGTCGCTTTTTTGATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>394 340 160 106</canonical_bands>
                <polymorphic_bands>734 160 106</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGATTGAGTATCGACATTT</pcr_primer_p1>
		<pcr_primer_p2>AAATATGAAAATTTCCGGAGTA</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>GCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTT</canonical_amplicon>
		<polymorphic_amplicon>GCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATRCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30012</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>101003</contig_pos>
        <strand>+</strand>
        <context>RCAAAAGTCC[A/C]TGTTGAGAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCC</left_flank>
        <right_flank>TGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCTACTAAAAATAGATTTCCGAGTATAAAAAAAGGCATCGAGTTGTTGGTATACAAGAAGCAATAGAAAACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCGCATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGTTGAAGTACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGATTCTAATACAATTTGAATGAAAGTTAACCGAACTTTTTGAAGAAAACTATCCGGGAAAAATGACCTTAAATGGAAGGGTCCCTAGAATAGAAGGGCCCTCCAGAGGTTCTAGTAAGGTTTTACACGCCTTTCAAAATTCATAAAGAAACCTTCACTCGAAATCTATAGATTTGCAGAAATTTTTTGAAAAAAAGCTGTTTCGCAAATTTGATGAAAAGAGAAGGCCTATTTTTGTTCCCTATTCTTTCTTTATTAGAAATAATAAATATGTATATATTGTCGAAATAAAAAAAAACTGGGACTTGAGAAGTGAAAACCGTCGCTTTTTTGATCTACGAAAAAG</canonical>
            <polymorphic>ATTTCTACTAAAAATAGATTTCCGAGTATAAAAAAAGGCATCGAGTTGTTGGTATACAAGAAGCAATAGAAAACGAGTACGCTCAATTTCACACTGCATACAACTAGAGGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCGCATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCMTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGTTGAAGTACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGATTCTAATACAATTTGAATGAAAGTTAACCGAACTTTTTGAAGAAAACTATCCGGGAAAAATGACCTTAAATGGAAGGGTCCCTAGAATAGAAGGGCCCTCCAGAGGTTCTAGTAAGGTTTTACACGCCTTTCAAAATTCATAAAGAAACCTTCACTCGAAATCTATAGATTTGCAGAAATTTTTTGAAAAAAAGCTGTTTCGCAAATTTGATGAAAAGAGAAGGCCTATTTTTGTTCCCTATTCTTTCTTTATTAGAAATAATAAATATGTATATATTGTCGAAATAAAAAAAAACTGGGACTTGAGAAGTGAAAACCGTCGCTTTTTTGATCTACGAAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGATTGAGTATCGACATTT</pcr_primer_p1>
		<pcr_primer_p2>AAATATGAAAATTTCCGGAGTA</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>GCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTT</canonical_amplicon>
		<polymorphic_amplicon>GCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCMTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30013</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>101111</contig_pos>
        <strand>+</strand>
        <context>AAAGYTGAAG[C/T]ACCTTTTTTt</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGTTGAAG</left_flank>
        <right_flank>ACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCGCATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGTTGAAGTACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGATTCTAATACAATTTGAATGAAAGTTAACCGAACTTTTTGAAGAAAACTATCCGGGAAAAATGACCTTAAATGGAAGGGTCCCTAGAATAGAAGGGCCCTCCAGAGGTTCTAGTAAGGTTTTACACGCCTTTCAAAATTCATAAAGAAACCTTCACTCGAAATCTATAGATTTGCAGAAATTTTTTGAAAAAAAGCTGTTTCGCAAATTTGATGAAAAGAGAAGGCCTATTTTTGTTCCCTATTCTTTCTTTATTAGAAATAATAAATATGTATATATTGTCGAAATAAAAAAAAACTGGGACTTGAGAAGTGAAAACCGTCGCTTTTTTGATCTACGAAAAAGTGCGGCAAAATCGTAATATTTCAGACTTTTGCCTCGTCCGAGCTACTTTCGCAATTAAGTCCGGTTTTTCAATAAAAACCAGATTCTAAAAATGCTAATGATCATGTT</canonical>
            <polymorphic>GGAAGGAGGAAAGGGATAGGAAGGGGAGAACAATTGAGAGTGTTTTTCGCATTTTTTGGAGAGAGAGAGAGAGAGCGGGTGACAAGACTTTTGAGTTTTAGTAGAGAGCAATCTAGAAGTTATCAATTGCTCTGGATATGGGATTTTGGCAGATTCACTGTTTCAGGAACTCTAGTTGAAATTGGTTTTATTTTCTGACAAAATAAATCTGAATCAAATACGCAGGTCAAAAGGCTGAAATACGGAATGTTTGCGATTGAGTATCGACATTTTTCAAGAAATAATTTGAAGAATTACTCACCGTGAAACCTGTATTAGAAAGGCATCATTAACAGAAGGGTCCCTCTAACAGAAGGGCACTCCGAGAAAGGCTTGGAAAATGCAAAAGTCCCTGTTGAGAGACCCCCTCGAAATTGTTTTGTTCGAAGTTTAAAATTTCCGCACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGTTGAAGYACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGATTCTAATACAATTTGAATGAAAGTTAACCGAACTTTTTGAAGAAAACTATCCGGGAAAAATGACCTTAAATGGAAGGGTCCCTAGAATAGAAGGGCCCTCCAGAGGTTCTAGTAAGGTTTTACACGCCTTTCAAAATTCATAAAGAAACCTTCACTCGAAATCTATAGATTTGCAGAAATTTTTTGAAAAAAAGCTGTTTCGCAAATTTGATGAAAAGAGAAGGCCTATTTTTGTTCCCTATTCTTTCTTTATTAGAAATAATAAATATGTATATATTGTCGAAATAAAAAAAAACTGGGACTTGAGAAGTGAAAACCGTCGCTTTTTTGATCTACGAAAAAGTGCGGCAAAATCGTAATATTTCAGACTTTTGCCTCGTCCGAGCTACTTTCGCAATTAAGTCCGGTTTTTCAATAAAAACCAGATTCTAAAAATGCTAATGATCATGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACGTTTTCAGTCAAAAATACTC</pcr_primer_p1>
		<pcr_primer_p2>AAAGGCGTGTAAAACCTTACTA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGTTGAAGTACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGATTCTAATACAATTTGAATGAAAGTTAACCGAACTTTTTGAAGAAAACTATCCGGGAAAAATGACCTTAAATGGAAGGGTCCCTAGAATAGAAGGGCCCTCCAGAGGTTCTAGTAAGGTTTTACACGCCTTT</canonical_amplicon>
		<polymorphic_amplicon>CACGTTTTCAGTCAAAAATACTCCGGAAATTTTCATATTTCACAGAAAAAAGTTGAAGYACCTTTTTTTTCGTTCGAAACATTTCTTAATTTTGGCTGAATTGATTGATTCTAATACAATTTGAATGAAAGTTAACCGAACTTTTTGAAGAAAACTATCCGGGAAAAATGACCTTAAATGGAAGGGTCCCTAGAATAGAAGGGCCCTCCAGAGGTTCTAGTAAGGTTTTACACGCCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30014</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>102604</contig_pos>
        <strand>+</strand>
        <context>CTGCTTGTGA[C/T]TATAATATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGAAGAACCATGTAATAAAAAGGCTCCCTCAAAGTTTAGCTGCTTGTGA</left_flank>
        <right_flank>TATAATATTCCTCAAGAATTGAATAAAAAATCGACGTTCCACGATTTCAC</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAAGAAGAATAAGCGAACAATCGCCCGTGTCTTCTCGCTCCCGTCAATCCCATTTGCGGCAGTTGAATGAGCATGAATGGGAATGGAAGAGAAGAGTAGATCAGAAGGAAGAATAAGAGACATCTTTCAACTTTCAACTTGTACTTCTGTTCAACAATTTTCAGGAAGATTTTGGAGGAAAGGTCGACAACTATGTTTTAGTGATATGACTTTTTCATTGATCTGATGAACTACTAAGGCTTTCAGGATCACTTAAGACGTTTCATTTAGTTATGGCATACCGAAACAAAAAATCATATCGGAAATTTTTAGCAGAAATGAGCTGAAATTGAAGTGGTAAAGAAGAATTTCAGAGCTTTTCTAAATATTAATTAACTAGCATGTAAACATAGAAAGAGATTACTGTAAAACCTGTATTAGAAGGGCCTTACGAGAATGATTCGAAAAATGGAAGAACCATGTAATAAAAAGGCTCCCTCAAAGTTTAGCTGCTTGTGATTATAATATTCCTCAAGAATTGAATAAAAAATCGACGTTCCACGATTTCACAGAAATGCTGAAACACTATTTTTAAATTGATGAGGAAAATTACAGAAAAAATAGAAAGGTCCCCTCTAATTGAAGGGCCCCTGTAATCGAAAGGTCCTCCGCAGGTAACTTGGACCAATAGAAGGGCCGAGCCGGCCCTTTTAATACAGGTTTTGCAGTATTCGTGATGAAACGATGGGGTTTTTTTCTGGTTGATGAAGTTTTGGACTGAAATCGTTACGTCTGCTATGAATCGAGGCGAAAATTAATGTAAAAGTTCTGCCATGGCAGTCTATTAGAGGGAATGCGAGTTCTTTTGCAATTTTTATGACATATTTATTTTGAGGCTCATGAAAAGAGAACACTGGATTTAAAATCCGACATCGAATGTTAAACTTTTGAAATAGAAAAAAATTTAAATTCGGAATTTGGAATTTATGCATTTTATGAATTCGACATATCGTATTTGCT</canonical>
            <polymorphic>GGAAGAAGAATAAGCGAACAATCGCCCGTGTCTTCTCGCTCCCGTCAATCCCATTTGCGGCAGTTGAATGAGCATGAATGGGAATGGAAGAGAAGAGTAGATCAGAAGGAAGAATAAGAGACATCTTTCAACTTTCAACTTGTACTTCTGTTCAACAATTTTCAGGAAGATTTTGGAGGAAAGGTCGACAACTATGTTTTAGTGATATGACTTTTTCATTGATCTGATGAACTACTAAGGCTTTCAGGATCACTTAAGACGTTTCATTTAGTTATGGCATACCGAAACAAAAAATCATATCGGAAATTTTTAGCAGAAATGAGCTGAAATTGAAGTGGTAAAGAAGAATTTCAGAGCTTTTCTAAATATTAATTAACTAGCATGTAAACATAGAAAGAGATTACTGTAAAACCTGTATTAGAAGGGCCTTACGAGAATGATTCGAAAAATGGAAGAACCATGTAATAAAAAGGCTCCCTCAAAGTTTAGCTGCTTGTGAYTATAATATTCCTCAAGAATTGAATAAAAAATCGACGTTCCACGATTTCACAGAAATGCTGAAACACTATTTTTAAATTGATGAGGAAAATTACAGAAAAAATAGAAAGGTCCCCTCTAATTGAAGGGCCCCTGTAATCGAAAGGTCCTCCGCAGGTAACTTGGACCAATAGAAGGGCCGAGCCGGCCCTTTTAATACAGGTTTTGCAGTATTCGTGATGAAACGATGGGGTTTTTTTCTGGTTGATGAAGTTTTGGACTGAAATCGTTACGTCTGCTATGAATCGAGGCGAAAATTAATGTAAAAGTTCTGCCATGGCAGTCTATTAGAGGGAATGCGAGTTCTTTTGCAATTTTTATGACATATTTATTTTGAGGCTCATGAAAAGAGAACACTGGATTTAAAATCCGACATCGAATGTTAAACTTTTGAAATAGAAAAAAATTTAAATTCGGAATTTGGAATTTATGCATTTTATGAATTCGACATATCGTATTTGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAAATTGAAGTGGTAAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>AAATAGTGTTTCAGCATTTCTGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTGAAATTGAAGTGGTAAAGAAGAATTTCAGAGCTTTTCTAAATATTAATTAACTAGCATGTAAACATAGAAAGAGATTACTGTAAAACCTGTATTAGAAGGGCCTTACGAGAATGATTCGAAAAATGGAAGAACCATGTAATAAAAAGGCTCCCTCAAAGTTTAGCTGCTTGTGATTATAATATTCCTCAAGAATTGAATAAAAAATCGACGTTCCACGATTTCACAGAAATGCTGAAACACTATTT</canonical_amplicon>
		<polymorphic_amplicon>CTGAAATTGAAGTGGTAAAGAAGAATTTCAGAGCTTTTCTAAATATTAATTAACTAGCATGTAAACATAGAAAGAGATTACTGTAAAACCTGTATTAGAAGGGCCTTACGAGAATGATTCGAAAAATGGAAGAACCATGTAATAAAAAGGCTCCCTCAAAGTTTAGCTGCTTGTGAYTATAATATTCCTCAAGAATTGAATAAAAAATCGACGTTCCACGATTTCACAGAAATGCTGAAACACTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30015</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>102805</contig_pos>
        <strand>+</strand>
        <context>TTAATACAGG[C/T]TTTGCAGTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCAGGTAACTTGGACCAATAGAAGGGCCGAGCCGGCCCTTTTAATACAGG</left_flank>
        <right_flank>TTTGCAGTATTCGTGATGAAACGATGGGGTTTTTTTCTGGTTGATGAAGT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGATATGACTTTTTCATTGATCTGATGAACTACTAAGGCTTTCAGGATCACTTAAGACGTTTCATTTAGTTATGGCATACCGAAACAAAAAATCATATCGGAAATTTTTAGCAGAAATGAGCTGAAATTGAAGTGGTAAAGAAGAATTTCAGAGCTTTTCTAAATATTAATTAACTAGCATGTAAACATAGAAAGAGATTACTGTAAAACCTGTATTAGAAGGGCCTTACGAGAATGATTCGAAAAATGGAAGAACCATGTAATAAAAAGGCTCCCTCAAAGTTTAGCTGCTTGTGATTATAATATTCCTCAAGAATTGAATAAAAAATCGACGTTCCACGATTTCACAGAAATGCTGAAACACTATTTTTAAATTGATGAGGAAAATTACAGAAAAAATAGAAAGGTCCCCTCTAATTGAAGGGCCCCTGTAATCGAAAGGTCCTCCGCAGGTAACTTGGACCAATAGAAGGGCCGAGCCGGCCCTTTTAATACAGGTTTTGCAGTATTCGTGATGAAACGATGGGGTTTTTTTCTGGTTGATGAAGTTTTGGACTGAAATCGTTACGTCTGCTATGAATCGAGGCGAAAATTAATGTAAAAGTTCTGCCATGGCAGTCTATTAGAGGGAATGCGAGTTCTTTTGCAATTTTTATGACATATTTATTTTGAGGCTCATGAAAAGAGAACACTGGATTTAAAATCCGACATCGAATGTTAAACTTTTGAAATAGAAAAAAATTTAAATTCGGAATTTGGAATTTATGCATTTTATGAATTCGACATATCGTATTTGCTCTCATATAAGCTCACCATCCATGTGCATTATAATCGCAATTATATCGGTTTTTCTATCAAAAATCTGTCAACTGATAAGCTGTTAATAATATCATGATTAACATTTTATCAGTTGACTTAGTTTTATATCTTTCCTGGCAACCGGGATAATTTAGATCAAACAGGTGGATAGAGCTAATTCGGCTAAAAACAGTTAAATGC</canonical>
            <polymorphic>GTGATATGACTTTTTCATTGATCTGATGAACTACTAAGGCTTTCAGGATCACTTAAGACGTTTCATTTAGTTATGGCATACCGAAACAAAAAATCATATCGGAAATTTTTAGCAGAAATGAGCTGAAATTGAAGTGGTAAAGAAGAATTTCAGAGCTTTTCTAAATATTAATTAACTAGCATGTAAACATAGAAAGAGATTACTGTAAAACCTGTATTAGAAGGGCCTTACGAGAATGATTCGAAAAATGGAAGAACCATGTAATAAAAAGGCTCCCTCAAAGTTTAGCTGCTTGTGATTATAATATTCCTCAAGAATTGAATAAAAAATCGACGTTCCACGATTTCACAGAAATGCTGAAACACTATTTTTAAATTGATGAGGAAAATTACAGAAAAAATAGAAAGGTCCCCTCTAATTGAAGGGCCCCTGTAATCGAAAGGTCCTCCGCAGGTAACTTGGACCAATAGAAGGGCCGAGCCGGCCCTTTTAATACAGGYTTTGCAGTATTCGTGATGAAACGATGGGGTTTTTTTCTGGTTGATGAAGTTTTGGACTGAAATCGTTACGTCTGCTATGAATCGAGGCGAAAATTAATGTAAAAGTTCTGCCATGGCAGTCTATTAGAGGGAATGCGAGTTCTTTTGCAATTTTTATGACATATTTATTTTGAGGCTCATGAAAAGAGAACACTGGATTTAAAATCCGACATCGAATGTTAAACTTTTGAAATAGAAAAAAATTTAAATTCGGAATTTGGAATTTATGCATTTTATGAATTCGACATATCGTATTTGCTCTCATATAAGCTCACCATCCATGTGCATTATAATCGCAATTATATCGGTTTTTCTATCAAAAATCTGTCAACTGATAAGCTGTTAATAATATCATGATTAACATTTTATCAGTTGACTTAGTTTTATATCTTTCCTGGCAACCGGGATAATTTAGATCAAACAGGTGGATAGAGCTAATTCGGCTAAAAACAGTTAAATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTCCTCAAGAATTGAATAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAACTTCATCAACCAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATTCCTCAAGAATTGAATAAAAAATCGACGTTCCACGATTTCACAGAAATGCTGAAACACTATTTTTAAATTGATGAGGAAAATTACAGAAAAAATAGAAAGGTCCCCTCTAATTGAAGGGCCCCTGTAATCGAAAGGTCCTCCGCAGGTAACTTGGACCAATAGAAGGGCCGAGCCGGCCCTTTTAATACAGGTTTTGCAGTATTCGTGATGAAACGATGGGGTTTTTTTCTGGTTGATGAAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TATTCCTCAAGAATTGAATAAAAAATCGACGTTCCACGATTTCACAGAAATGCTGAAACACTATTTTTAAATTGATGAGGAAAATTACAGAAAAAATAGAAAGGTCCCCTCTAATTGAAGGGCCCCTGTAATCGAAAGGTCCTCCGCAGGTAACTTGGACCAATAGAAGGGCCGAGCCGGCCCTTTTAATACAGGYTTTGCAGTATTCGTGATGAAACGATGGGGTTTTTTTCTGGTTGATGAAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30016</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>111089</contig_pos>
        <strand></strand>
        <context>tctcggttct[T/C]atgagaggta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATAGAAGCCCATCCCATACGTTCACTTTGAACTCAATTATCTCGGTTCT</left_flank>
        <right_flank>ATGAGAGGTATCAAAAGTCTATCAATTAATAAAATACTGGCGATATTTTG</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGATGAGCTCACTGTGTCTGTGTTACAACAAAATAACACAATTACGAAATGTATTGGAAGGTTTTGAACGTCTAGAAGTAGCTTGATCAATAGCTAAGTGGGTATTGAGACATTATTATTTTTTTAGAATTCAAGGAAGTGTTGAAATAGAACATTTTGATTCACAGTAAACATTCTCTGAAACTTCAACAATCCAGAACTTCTGAATCGATTTTGAGGTCCGCAAAAAATCGCCTTCCGCGTTTTCAAATTTAAAAATACAGTTTTTCACAAAGCTGTCTCGAATTTCTTCATTAAAATGACTGCTAAATTAGTAATTTTGGGATCAGCATAGTTATGTTTTTTTGACAGTCATAAACTATTTGAAACAGGGAAATCATAACTTAAACGTAATTTGGTAACGTCAGAACTTTGAAAAGACATTTCATAAAACTACCATATTTGCTTCAATAGAAGCCCATCCCATACGTTCACTTTGAACTCAATTATCTCGGTTCTTATGAGAGGTATCAAAAGTCTATCAATTAATAAAATACTGGCGATATTTTGACTAACATTTTACAAATTCACAAATTCTTGTTATCTCTTACAGAATTGAGATAATTGAGCTCAAAGTGCATAGAGAGGTCGTTTATCTGTGTTTACGGTCTACGATCTGAGTCAGATCATCATCTGACTATGAGTAATTTTATTAAGCATGACTAGTTTTTTAGAATTCAAACTGGGGTTTTGAAACAGGAAATTTTGTTTAAAATCGACCTTTCCTAATTTAAAAAATTTCAGGTCCGCACAAAGCTGTCTTTAAATGCAGATAAGTTCAATTGAAATAATTGTTTAAATGGTAATATGAAGTCAACATAGTTGTGCATGTATATTGGTAAAACCAACTGTTTGAAACAGTGAAAGCTCGCCCAATTTACAAAAACCGCTAAAAGACAGAACTTTGAATATAACATTTCATTAAATCACCGGATTTGCTCTAATGAAAACCCACCCAAA</canonical>
            <polymorphic>GGGATGAGCTCACTGTGTCTGTGTTACAACAAAATAACACAATTACGAAATGTATTGGAAGGTTTTGAACGTCTAGAAGTAGCTTGATCAATAGCTAAGTGGGTATTGAGACATTATTATTTTTTTAGAATTCAAGGAAGTGTTGAAATAGAACATTTTGATTCACAGTAAACATTCTCTGAAACTTCAACAATCCAGAACTTCTGAATCGATTTTGAGGTCCGCAAAAAATCGCCTTCCGCGTTTTCAAATTTAAAAATACAGTTTTTCACAAAGCTGTCTCGAATTTCTTCATTAAAATGACTGCTAAATTAGTAATTTTGGGATCAGCATAGTTATGTTTTTTTGACAGTCATAAACTATTTGAAACAGGGAAATCATAACTTAAACGTAATTTGGTAACGTCAGAACTTTGAAAAGACATTTCATAAAACTACCATATTTGCTTCAATAGAAGCCCATCCCATACGTTCACTTTGAACTCAATTATCTCGGTTCTYATGAGAGGTATCAAAAGTCTATCAATTAATAAAATACTGGCGATATTTTGACTAACATTTTACAAATTCACAAATTCTTGTTATCTCTTACAGAATTGAGATAATTGAGCTCAAAGTGCATAGAGAGGTCGTTTATCTGTGTTTACGGTCTACGATCTGAGTCAGATCATCATCTGACTATGAGTAATTTTATTAAGCATGACTAGTTTTTTAGAATTCAAACTGGGGTTTTGAAACAGGAAATTTTGTTTAAAATCGACCTTTCCTAATTTAAAAAATTTCAGGTCCGCACAAAGCTGTCTTTAAATGCAGATAAGTTCAATTGAAATAATTGTTTAAATGGTAATATGAAGTCAACATAGTTGTGCATGTATATTGGTAAAACCAACTGTTTGAAACAGTGAAAGCTCGCCCAATTTACAAAAACCGCTAAAAGACAGAACTTTGAATATAACATTTCATTAAATCACCGGATTTGCTCTAATGAAAACCCACCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGACATTTCATAAAACTACCAT</pcr_primer_p1>
		<pcr_primer_p2>TAAACAAAATTTCCTGTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>337</pcr_amplicon_size>
		<canonical_amplicon>AAAAGACATTTCATAAAACTACCATATTTGCTTCAATAGAAGCCCATCCCATACGTTCACTTTGAACTCAATTATCTCGGTTCTTATGAGAGGTATCAAAAGTCTATCAATTAATAAAATACTGGCGATATTTTGACTAACATTTTACAAATTCACAAATTCTTGTTATCTCTTACAGAATTGAGATAATTGAGCTCAAAGTGCATAGAGAGGTCGTTTATCTGTGTTTACGGTCTACGATCTGAGTCAGATCATCATCTGACTATGAGTAATTTTATTAAGCATGACTAGTTTTTTAGAATTCAAACTGGGGTTTTGAAACAGGAAATTTTGTTTA</canonical_amplicon>
		<polymorphic_amplicon>AAAAGACATTTCATAAAACTACCATATTTGCTTCAATAGAAGCCCATCCCATACGTTCACTTTGAACTCAATTATCTCGGTTCTYATGAGAGGTATCAAAAGTCTATCAATTAATAAAATACTGGCGATATTTTGACTAACATTTTACAAATTCACAAATTCTTGTTATCTCTTACAGAATTGAGATAATTGAGCTCAAAGTGCATAGAGAGGTCGTTTATCTGTGTTTACGGTCTACGATCTGAGTCAGATCATCATCTGACTATGAGTAATTTTATTAAGCATGACTAGTTTTTTAGAATTCAAACTGGGGTTTTGAAACAGGAAATTTTGTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30017</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>111137</contig_pos>
        <strand></strand>
        <context>tggcgatatt[T/A]tgactracat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CTTATGAGAGGTATCAAAAGTCTATCAATTAATAAAATACTGGCGATATT</left_flank>
        <right_flank>TGACTAACATTTTACAAATTCACAAATTCTTGTTATCTCTTACAGAATTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGTATTGGAAGGTTTTGAACGTCTAGAAGTAGCTTGATCAATAGCTAAGTGGGTATTGAGACATTATTATTTTTTTAGAATTCAAGGAAGTGTTGAAATAGAACATTTTGATTCACAGTAAACATTCTCTGAAACTTCAACAATCCAGAACTTCTGAATCGATTTTGAGGTCCGCAAAAAATCGCCTTCCGCGTTTTCAAATTTAAAAATACAGTTTTTCACAAAGCTGTCTCGAATTTCTTCATTAAAATGACTGCTAAATTAGTAATTTTGGGATCAGCATAGTTATGTTTTTTTGACAGTCATAAACTATTTGAAACAGGGAAATCATAACTTAAACGTAATTTGGTAACGTCAGAACTTTGAAAAGACATTTCATAAAACTACCATATTTGCTTCAATAGAAGCCCATCCCATACGTTCACTTTGAACTCAATTATCTCGGTTCTTATGAGAGGTATCAAAAGTCTATCAATTAATAAAATACTGGCGATATTTTGACTAACATTTTACAAATTCACAAATTCTTGTTATCTCTTACAGAATTGAGATAATTGAGCTCAAAGTGCATAGAGAGGTCGTTTATCTGTGTTTACGGTCTACGATCTGAGTCAGATCATCATCTGACTATGAGTAATTTTATTAAGCATGACTAGTTTTTTAGAATTCAAACTGGGGTTTTGAAACAGGAAATTTTGTTTAAAATCGACCTTTCCTAATTTAAAAAATTTCAGGTCCGCACAAAGCTGTCTTTAAATGCAGATAAGTTCAATTGAAATAATTGTTTAAATGGTAATATGAAGTCAACATAGTTGTGCATGTATATTGGTAAAACCAACTGTTTGAAACAGTGAAAGCTCGCCCAATTTACAAAAACCGCTAAAAGACAGAACTTTGAATATAACATTTCATTAAATCACCGGATTTGCTCTAATGAAAACCCACCCAAAGCACTTTGAGCTCAATTATCTTGGTTGCTATAACAGATATTAAAAAAC</canonical>
            <polymorphic>AATGTATTGGAAGGTTTTGAACGTCTAGAAGTAGCTTGATCAATAGCTAAGTGGGTATTGAGACATTATTATTTTTTTAGAATTCAAGGAAGTGTTGAAATAGAACATTTTGATTCACAGTAAACATTCTCTGAAACTTCAACAATCCAGAACTTCTGAATCGATTTTGAGGTCCGCAAAAAATCGCCTTCCGCGTTTTCAAATTTAAAAATACAGTTTTTCACAAAGCTGTCTCGAATTTCTTCATTAAAATGACTGCTAAATTAGTAATTTTGGGATCAGCATAGTTATGTTTTTTTGACAGTCATAAACTATTTGAAACAGGGAAATCATAACTTAAACGTAATTTGGTAACGTCAGAACTTTGAAAAGACATTTCATAAAACTACCATATTTGCTTCAATAGAAGCCCATCCCATACGTTCACTTTGAACTCAATTATCTCGGTTCTTATGAGAGGTATCAAAAGTCTATCAATTAATAAAATACTGGCGATATTWTGACTAACATTTTACAAATTCACAAATTCTTGTTATCTCTTACAGAATTGAGATAATTGAGCTCAAAGTGCATAGAGAGGTCGTTTATCTGTGTTTACGGTCTACGATCTGAGTCAGATCATCATCTGACTATGAGTAATTTTATTAAGCATGACTAGTTTTTTAGAATTCAAACTGGGGTTTTGAAACAGGAAATTTTGTTTAAAATCGACCTTTCCTAATTTAAAAAATTTCAGGTCCGCACAAAGCTGTCTTTAAATGCAGATAAGTTCAATTGAAATAATTGTTTAAATGGTAATATGAAGTCAACATAGTTGTGCATGTATATTGGTAAAACCAACTGTTTGAAACAGTGAAAGCTCGCCCAATTTACAAAAACCGCTAAAAGACAGAACTTTGAATATAACATTTCATTAAATCACCGGATTTGCTCTAATGAAAACCCACCCAAAGCACTTTGAGCTCAATTATCTTGGTTGCTATAACAGATATTAAAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGACATTTCATAAAACTACCAT</pcr_primer_p1>
		<pcr_primer_p2>TAAACAAAATTTCCTGTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>337</pcr_amplicon_size>
		<canonical_amplicon>AAAAGACATTTCATAAAACTACCATATTTGCTTCAATAGAAGCCCATCCCATACGTTCACTTTGAACTCAATTATCTCGGTTCTTATGAGAGGTATCAAAAGTCTATCAATTAATAAAATACTGGCGATATTTTGACTAACATTTTACAAATTCACAAATTCTTGTTATCTCTTACAGAATTGAGATAATTGAGCTCAAAGTGCATAGAGAGGTCGTTTATCTGTGTTTACGGTCTACGATCTGAGTCAGATCATCATCTGACTATGAGTAATTTTATTAAGCATGACTAGTTTTTTAGAATTCAAACTGGGGTTTTGAAACAGGAAATTTTGTTTA</canonical_amplicon>
		<polymorphic_amplicon>AAAAGACATTTCATAAAACTACCATATTTGCTTCAATAGAAGCCCATCCCATACGTTCACTTTGAACTCAATTATCTCGGTTCTTATGAGAGGTATCAAAAGTCTATCAATTAATAAAATACTGGCGATATTWTGACTAACATTTTACAAATTCACAAATTCTTGTTATCTCTTACAGAATTGAGATAATTGAGCTCAAAGTGCATAGAGAGGTCGTTTATCTGTGTTTACGGTCTACGATCTGAGTCAGATCATCATCTGACTATGAGTAATTTTATTAAGCATGACTAGTTTTTTAGAATTCAAACTGGGGTTTTGAAACAGGAAATTTTGTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30018</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>111143</contig_pos>
        <strand></strand>
        <context>tattwtgact[A/G]acattttaca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAGGTATCAAAAGTCTATCAATTAATAAAATACTGGCGATATTTTGACT</left_flank>
        <right_flank>ACATTTTACAAATTCACAAATTCTTGTTATCTCTTACAGAATTGAGATAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGAAGGTTTTGAACGTCTAGAAGTAGCTTGATCAATAGCTAAGTGGGTATTGAGACATTATTATTTTTTTAGAATTCAAGGAAGTGTTGAAATAGAACATTTTGATTCACAGTAAACATTCTCTGAAACTTCAACAATCCAGAACTTCTGAATCGATTTTGAGGTCCGCAAAAAATCGCCTTCCGCGTTTTCAAATTTAAAAATACAGTTTTTCACAAAGCTGTCTCGAATTTCTTCATTAAAATGACTGCTAAATTAGTAATTTTGGGATCAGCATAGTTATGTTTTTTTGACAGTCATAAACTATTTGAAACAGGGAAATCATAACTTAAACGTAATTTGGTAACGTCAGAACTTTGAAAAGACATTTCATAAAACTACCATATTTGCTTCAATAGAAGCCCATCCCATACGTTCACTTTGAACTCAATTATCTCGGTTCTTATGAGAGGTATCAAAAGTCTATCAATTAATAAAATACTGGCGATATTTTGACTAACATTTTACAAATTCACAAATTCTTGTTATCTCTTACAGAATTGAGATAATTGAGCTCAAAGTGCATAGAGAGGTCGTTTATCTGTGTTTACGGTCTACGATCTGAGTCAGATCATCATCTGACTATGAGTAATTTTATTAAGCATGACTAGTTTTTTAGAATTCAAACTGGGGTTTTGAAACAGGAAATTTTGTTTAAAATCGACCTTTCCTAATTTAAAAAATTTCAGGTCCGCACAAAGCTGTCTTTAAATGCAGATAAGTTCAATTGAAATAATTGTTTAAATGGTAATATGAAGTCAACATAGTTGTGCATGTATATTGGTAAAACCAACTGTTTGAAACAGTGAAAGCTCGCCCAATTTACAAAAACCGCTAAAAGACAGAACTTTGAATATAACATTTCATTAAATCACCGGATTTGCTCTAATGAAAACCCACCCAAAGCACTTTGAGCTCAATTATCTTGGTTGCTATAACAGATATTAAAAAACGGATAA</canonical>
            <polymorphic>TTGGAAGGTTTTGAACGTCTAGAAGTAGCTTGATCAATAGCTAAGTGGGTATTGAGACATTATTATTTTTTTAGAATTCAAGGAAGTGTTGAAATAGAACATTTTGATTCACAGTAAACATTCTCTGAAACTTCAACAATCCAGAACTTCTGAATCGATTTTGAGGTCCGCAAAAAATCGCCTTCCGCGTTTTCAAATTTAAAAATACAGTTTTTCACAAAGCTGTCTCGAATTTCTTCATTAAAATGACTGCTAAATTAGTAATTTTGGGATCAGCATAGTTATGTTTTTTTGACAGTCATAAACTATTTGAAACAGGGAAATCATAACTTAAACGTAATTTGGTAACGTCAGAACTTTGAAAAGACATTTCATAAAACTACCATATTTGCTTCAATAGAAGCCCATCCCATACGTTCACTTTGAACTCAATTATCTCGGTTCTTATGAGAGGTATCAAAAGTCTATCAATTAATAAAATACTGGCGATATTTTGACTRACATTTTACAAATTCACAAATTCTTGTTATCTCTTACAGAATTGAGATAATTGAGCTCAAAGTGCATAGAGAGGTCGTTTATCTGTGTTTACGGTCTACGATCTGAGTCAGATCATCATCTGACTATGAGTAATTTTATTAAGCATGACTAGTTTTTTAGAATTCAAACTGGGGTTTTGAAACAGGAAATTTTGTTTAAAATCGACCTTTCCTAATTTAAAAAATTTCAGGTCCGCACAAAGCTGTCTTTAAATGCAGATAAGTTCAATTGAAATAATTGTTTAAATGGTAATATGAAGTCAACATAGTTGTGCATGTATATTGGTAAAACCAACTGTTTGAAACAGTGAAAGCTCGCCCAATTTACAAAAACCGCTAAAAGACAGAACTTTGAATATAACATTTCATTAAATCACCGGATTTGCTCTAATGAAAACCCACCCAAAGCACTTTGAGCTCAATTATCTTGGTTGCTATAACAGATATTAAAAAACGGATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGACATTTCATAAAACTACCAT</pcr_primer_p1>
		<pcr_primer_p2>TAAACAAAATTTCCTGTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>337</pcr_amplicon_size>
		<canonical_amplicon>AAAAGACATTTCATAAAACTACCATATTTGCTTCAATAGAAGCCCATCCCATACGTTCACTTTGAACTCAATTATCTCGGTTCTTATGAGAGGTATCAAAAGTCTATCAATTAATAAAATACTGGCGATATTTTGACTAACATTTTACAAATTCACAAATTCTTGTTATCTCTTACAGAATTGAGATAATTGAGCTCAAAGTGCATAGAGAGGTCGTTTATCTGTGTTTACGGTCTACGATCTGAGTCAGATCATCATCTGACTATGAGTAATTTTATTAAGCATGACTAGTTTTTTAGAATTCAAACTGGGGTTTTGAAACAGGAAATTTTGTTTA</canonical_amplicon>
		<polymorphic_amplicon>AAAAGACATTTCATAAAACTACCATATTTGCTTCAATAGAAGCCCATCCCATACGTTCACTTTGAACTCAATTATCTCGGTTCTTATGAGAGGTATCAAAAGTCTATCAATTAATAAAATACTGGCGATATTTTGACTRACATTTTACAAATTCACAAATTCTTGTTATCTCTTACAGAATTGAGATAATTGAGCTCAAAGTGCATAGAGAGGTCGTTTATCTGTGTTTACGGTCTACGATCTGAGTCAGATCATCATCTGACTATGAGTAATTTTATTAAGCATGACTAGTTTTTTAGAATTCAAACTGGGGTTTTGAAACAGGAAATTTTGTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30019</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>111162</contig_pos>
        <strand></strand>
        <context>caaattcaca[A/G]attcttgtta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATTAATAAAATACTGGCGATATTTTGACTAACATTTTACAAATTCACA</left_flank>
        <right_flank>ATTCTTGTTATCTCTTACAGAATTGAGATAATTGAGCTCAAAGTGCATAG</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGAAGTAGCTTGATCAATAGCTAAGTGGGTATTGAGACATTATTATTTTTTTAGAATTCAAGGAAGTGTTGAAATAGAACATTTTGATTCACAGTAAACATTCTCTGAAACTTCAACAATCCAGAACTTCTGAATCGATTTTGAGGTCCGCAAAAAATCGCCTTCCGCGTTTTCAAATTTAAAAATACAGTTTTTCACAAAGCTGTCTCGAATTTCTTCATTAAAATGACTGCTAAATTAGTAATTTTGGGATCAGCATAGTTATGTTTTTTTGACAGTCATAAACTATTTGAAACAGGGAAATCATAACTTAAACGTAATTTGGTAACGTCAGAACTTTGAAAAGACATTTCATAAAACTACCATATTTGCTTCAATAGAAGCCCATCCCATACGTTCACTTTGAACTCAATTATCTCGGTTCTTATGAGAGGTATCAAAAGTCTATCAATTAATAAAATACTGGCGATATTTTGACTAACATTTTACAAATTCACAAATTCTTGTTATCTCTTACAGAATTGAGATAATTGAGCTCAAAGTGCATAGAGAGGTCGTTTATCTGTGTTTACGGTCTACGATCTGAGTCAGATCATCATCTGACTATGAGTAATTTTATTAAGCATGACTAGTTTTTTAGAATTCAAACTGGGGTTTTGAAACAGGAAATTTTGTTTAAAATCGACCTTTCCTAATTTAAAAAATTTCAGGTCCGCACAAAGCTGTCTTTAAATGCAGATAAGTTCAATTGAAATAATTGTTTAAATGGTAATATGAAGTCAACATAGTTGTGCATGTATATTGGTAAAACCAACTGTTTGAAACAGTGAAAGCTCGCCCAATTTACAAAAACCGCTAAAAGACAGAACTTTGAATATAACATTTCATTAAATCACCGGATTTGCTCTAATGAAAACCCACCCAAAGCACTTTGAGCTCAATTATCTTGGTTGCTATAACAGATATTAAAAAACGGATAACTCAAAAATACTGATGATA</canonical>
            <polymorphic>TAGAAGTAGCTTGATCAATAGCTAAGTGGGTATTGAGACATTATTATTTTTTTAGAATTCAAGGAAGTGTTGAAATAGAACATTTTGATTCACAGTAAACATTCTCTGAAACTTCAACAATCCAGAACTTCTGAATCGATTTTGAGGTCCGCAAAAAATCGCCTTCCGCGTTTTCAAATTTAAAAATACAGTTTTTCACAAAGCTGTCTCGAATTTCTTCATTAAAATGACTGCTAAATTAGTAATTTTGGGATCAGCATAGTTATGTTTTTTTGACAGTCATAAACTATTTGAAACAGGGAAATCATAACTTAAACGTAATTTGGTAACGTCAGAACTTTGAAAAGACATTTCATAAAACTACCATATTTGCTTCAATAGAAGCCCATCCCATACGTTCACTTTGAACTCAATTATCTCGGTTCTTATGAGAGGTATCAAAAGTCTATCAATTAATAAAATACTGGCGATATTTTGACTAACATTTTACAAATTCACARATTCTTGTTATCTCTTACAGAATTGAGATAATTGAGCTCAAAGTGCATAGAGAGGTCGTTTATCTGTGTTTACGGTCTACGATCTGAGTCAGATCATCATCTGACTATGAGTAATTTTATTAAGCATGACTAGTTTTTTAGAATTCAAACTGGGGTTTTGAAACAGGAAATTTTGTTTAAAATCGACCTTTCCTAATTTAAAAAATTTCAGGTCCGCACAAAGCTGTCTTTAAATGCAGATAAGTTCAATTGAAATAATTGTTTAAATGGTAATATGAAGTCAACATAGTTGTGCATGTATATTGGTAAAACCAACTGTTTGAAACAGTGAAAGCTCGCCCAATTTACAAAAACCGCTAAAAGACAGAACTTTGAATATAACATTTCATTAAATCACCGGATTTGCTCTAATGAAAACCCACCCAAAGCACTTTGAGCTCAATTATCTTGGTTGCTATAACAGATATTAAAAAACGGATAACTCAAAAATACTGATGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>297 280 142 121 55 35 35 27 8</canonical_bands>
                <polymorphic_bands>297 280 150 121 55 35 35 27</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>121 99 92 85 83 76 60 55 44 41 39 35 29 27 26 25 21 9 9 9 8 7</canonical_bands>
                <polymorphic_bands>121 99 92 85 83 76 60 55 44 41 39 35 29 29 27 26 25 9 9 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGACATTTCATAAAACTACCAT</pcr_primer_p1>
		<pcr_primer_p2>TAAACAAAATTTCCTGTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>337</pcr_amplicon_size>
		<canonical_amplicon>AAAAGACATTTCATAAAACTACCATATTTGCTTCAATAGAAGCCCATCCCATACGTTCACTTTGAACTCAATTATCTCGGTTCTTATGAGAGGTATCAAAAGTCTATCAATTAATAAAATACTGGCGATATTTTGACTAACATTTTACAAATTCACAAATTCTTGTTATCTCTTACAGAATTGAGATAATTGAGCTCAAAGTGCATAGAGAGGTCGTTTATCTGTGTTTACGGTCTACGATCTGAGTCAGATCATCATCTGACTATGAGTAATTTTATTAAGCATGACTAGTTTTTTAGAATTCAAACTGGGGTTTTGAAACAGGAAATTTTGTTTA</canonical_amplicon>
		<polymorphic_amplicon>AAAAGACATTTCATAAAACTACCATATTTGCTTCAATAGAAGCCCATCCCATACGTTCACTTTGAACTCAATTATCTCGGTTCTTATGAGAGGTATCAAAAGTCTATCAATTAATAAAATACTGGCGATATTTTGACTAACATTTTACAAATTCACARATTCTTGTTATCTCTTACAGAATTGAGATAATTGAGCTCAAAGTGCATAGAGAGGTCGTTTATCTGTGTTTACGGTCTACGATCTGAGTCAGATCATCATCTGACTATGAGTAATTTTATTAAGCATGACTAGTTTTTTAGAATTCAAACTGGGGTTTTGAAACAGGAAATTTTGTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30020</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>112905</contig_pos>
        <strand>+</strand>
        <context>AACCGCCGAG[A/G]GTYCAATTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTAAAGTTTATACGGTACATTTTGTTTTTTCTAGAGCCCAACCGCCGAG</left_flank>
        <right_flank>GTCCAATTCGGTCGGACGCAAATCTTACATTTCTAGATTCAACACATTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACAATTTCAATGAACAAAATGAACAAAACGGCTAGAGATGGAGAGATGCAGAGAGAAAGGGAAAAACGGGAGAAGAAACATTCGGGAGAGGAGGTTAATATTGCCTGCCATTTCACACTTTTTTCTGTCTGACAATCTTTTCGGTTTGAAGAGGAATGAGAAGAACGTTTGAATCTGACATAAAGAACAAATCATCATTATCAAACTTTCAAAGAGTTGTAATAAAAACTATGAAACAGTAATGTTATTTTTTTTGTATTTTTAAGATAACTTCCAAAGTAGAGAGTAGTACCAAATATAACTACACACAACACTCTAATATTATGCCACCCGCTTGCACGTTGAGCTCAATTATCTCGGTTTCTATGACATATATCAGACTTTTTTGATACCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGAAAGCATAGAGTGATCTTCTATTAAAGTTTATACGGTACATTTTGTTTTTTCTAGAGCCCAACCGCCGAGGGTCCAATTCGGTCGGACGCAAATCTTACATTTCTAGATTCAACACATTCCAGAAACTTGATAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGGCCGCTGAGGAACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGGGAAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAACGGAACGGAAGAAATGAGGAAGAAGAAGATGGATGAGGTGCACCAAGAAGTGATTAGGATGATGTACAGAAAACTTATTTCTTTGATTGATGGATTGGAGGACTG</canonical>
            <polymorphic>CAACAATTTCAATGAACAAAATGAACAAAACGGCTAGAGATGGAGAGATGCAGAGAGAAAGGGAAAAACGGGAGAAGAAACATTCGGGAGAGGAGGTTAATATTGCCTGCCATTTCACACTTTTTTCTGTCTGACAATCTTTTCGGTTTGAAGAGGAATGAGAAGAACGTTTGAATCTGACATAAAGAACAAATCATCATTATCAAACTTTCAAAGAGTTGTAATAAAAACTATGAAACAGTAATGTTATTTTTTTTGTATTTTTAAGATAACTTCCAAAGTAGAGAGTAGTACCAAATATAACTACACACAACACTCTAATATTATGCCACCCGCTTGCACGTTGAGCTCAATTATCTCGGTTTCTATGACATATATCAGACTTTTTTGATACCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGAAAGCATAGAGTGATCTTCTATTAAAGTTTATACGGTACATTTTGTTTTTTCTAGAGCCCAACCGCCGAGRGTCCAATTCGGTCGGACGCAAATCTTACATTTCTAGATTCAACACATTCCAGAAACTTGATAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGGCCGCTGAGGAACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGGGAAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAACGGAACGGAAGAAATGAGGAAGAAGAAGATGGATGAGGTGCACCAAGAAGTGATTAGGATGATGTACAGAAAACTTATTTCTTTGATTGATGGATTGGAGGACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>495 375 130</canonical_bands>
                <polymorphic_bands>625 375</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAATATAACTACACACAACACTC</pcr_primer_p1>
		<pcr_primer_p2>GTTTCTGGAATGTGTTGAATCT</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>CCAAATATAACTACACACAACACTCTAATATTATGCCACCCGCTTGCACGTTGAGCTCAATTATCTCGGTTTCTATGACATATATCAGACTTTTTTGATACCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGAAAGCATAGAGTGATCTTCTATTAAAGTTTATACGGTACATTTTGTTTTTTCTAGAGCCCAACCGCCGAGGGTCCAATTCGGTCGGACGCAAATCTTACATTTCTAGATTCAACACATTCCAGAAAC</canonical_amplicon>
		<polymorphic_amplicon>CCAAATATAACTACACACAACACTCTAATATTATGCCACCCGCTTGCACGTTGAGCTCAATTATCTCGGTTTCTATGACATATATCAGACTTTTTTGATACCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGAAAGCATAGAGTGATCTTCTATTAAAGTTTATACGGTACATTTTGTTTTTTCTAGAGCCCAACCGCCGAGRGTCCAATTCGGTCGGACGCAAATCTTACATTTCTAGATTCAACACATTCCAGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30021</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>112908</contig_pos>
        <strand>+</strand>
        <context>CGCCGAGRGT[C/T]CAATTCGGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGTTTATACGGTACATTTTGTTTTTTCTAGAGCCCAACCGCCGAGGGT</left_flank>
        <right_flank>CAATTCGGTCGGACGCAAATCTTACATTTCTAGATTCAACACATTCCAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATTTCAATGAACAAAATGAACAAAACGGCTAGAGATGGAGAGATGCAGAGAGAAAGGGAAAAACGGGAGAAGAAACATTCGGGAGAGGAGGTTAATATTGCCTGCCATTTCACACTTTTTTCTGTCTGACAATCTTTTCGGTTTGAAGAGGAATGAGAAGAACGTTTGAATCTGACATAAAGAACAAATCATCATTATCAAACTTTCAAAGAGTTGTAATAAAAACTATGAAACAGTAATGTTATTTTTTTTGTATTTTTAAGATAACTTCCAAAGTAGAGAGTAGTACCAAATATAACTACACACAACACTCTAATATTATGCCACCCGCTTGCACGTTGAGCTCAATTATCTCGGTTTCTATGACATATATCAGACTTTTTTGATACCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGAAAGCATAGAGTGATCTTCTATTAAAGTTTATACGGTACATTTTGTTTTTTCTAGAGCCCAACCGCCGAGGGTCCAATTCGGTCGGACGCAAATCTTACATTTCTAGATTCAACACATTCCAGAAACTTGATAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGGCCGCTGAGGAACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGGGAAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAACGGAACGGAAGAAATGAGGAAGAAGAAGATGGATGAGGTGCACCAAGAAGTGATTAGGATGATGTACAGAAAACTTATTTCTTTGATTGATGGATTGGAGGACTGATG</canonical>
            <polymorphic>CAATTTCAATGAACAAAATGAACAAAACGGCTAGAGATGGAGAGATGCAGAGAGAAAGGGAAAAACGGGAGAAGAAACATTCGGGAGAGGAGGTTAATATTGCCTGCCATTTCACACTTTTTTCTGTCTGACAATCTTTTCGGTTTGAAGAGGAATGAGAAGAACGTTTGAATCTGACATAAAGAACAAATCATCATTATCAAACTTTCAAAGAGTTGTAATAAAAACTATGAAACAGTAATGTTATTTTTTTTGTATTTTTAAGATAACTTCCAAAGTAGAGAGTAGTACCAAATATAACTACACACAACACTCTAATATTATGCCACCCGCTTGCACGTTGAGCTCAATTATCTCGGTTTCTATGACATATATCAGACTTTTTTGATACCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGAAAGCATAGAGTGATCTTCTATTAAAGTTTATACGGTACATTTTGTTTTTTCTAGAGCCCAACCGCCGAGGGTYCAATTCGGTCGGACGCAAATCTTACATTTCTAGATTCAACACATTCCAGAAACTTGATAGTTTTTTGTCAAATCAGTGTTTAAAAAAGCTGTGCTTTAAAACTACCCTGCTTCCCACCTGCCCTCGGTTTTCTGGATAATTTCGAAATCTCGAAACCAGATGTGTCACCTCCTCCTCCTCCTCCTCCCACCTCCTAAATCCTAAACATCCCTCACCACTTCAAAATCGCTAACATGTGTCCTCTTCTCACTTTGTCGTGTGGTTTCTGTGTGAGAGGAGGTTGGTTTTGGCCGCTGAGGAACACAAACTACCAGGTGTTTCAATGAATTTTCGAAAGTTTTGATTTCGGGAAGTGAGGCACTGAATTAGTTAGGAAATGGGGAAATATAGAACGGAACGGAAGAAATGAGGAAGAAGAAGATGGATGAGGTGCACCAAGAAGTGATTAGGATGATGTACAGAAAACTTATTTCTTTGATTGATGGATTGGAGGACTGATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAATATAACTACACACAACACTC</pcr_primer_p1>
		<pcr_primer_p2>GTTTCTGGAATGTGTTGAATCT</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>CCAAATATAACTACACACAACACTCTAATATTATGCCACCCGCTTGCACGTTGAGCTCAATTATCTCGGTTTCTATGACATATATCAGACTTTTTTGATACCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGAAAGCATAGAGTGATCTTCTATTAAAGTTTATACGGTACATTTTGTTTTTTCTAGAGCCCAACCGCCGAGGGTCCAATTCGGTCGGACGCAAATCTTACATTTCTAGATTCAACACATTCCAGAAAC</canonical_amplicon>
		<polymorphic_amplicon>CCAAATATAACTACACACAACACTCTAATATTATGCCACCCGCTTGCACGTTGAGCTCAATTATCTCGGTTTCTATGACATATATCAGACTTTTTTGATACCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGAAAGCATAGAGTGATCTTCTATTAAAGTTTATACGGTACATTTTGTTTTTTCTAGAGCCCAACCGCCGAGGGTYCAATTCGGTCGGACGCAAATCTTACATTTCTAGATTCAACACATTCCAGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30022</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>115169</contig_pos>
        <strand>+</strand>
        <context>GTCTCATTTT[G/T]GTAGGTTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCCTCTTCGTTCTTGGGTTTTTCTCACATTTTACACTTTGGTCTCATTTT</left_flank>
        <right_flank>GTAGGTTTTATTAGTATTTGTTAATGGTATCTAGAACTTTCCTGACTGGA</right_flank>
        <qual_score>130</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATATTAACCAAGATATAAAAACAGAGAAACAGAAGAAAATATGTTTAAATCAACATTTATGAAGTTTTTCAGGTGAGGCAAAAACCCCCCGCAAAACCTTTAGAAAAACGAAAAACCTCGCGAAAACTCTGGGGATGAACGAATCTGGGTGAAACTTTGTGGAAAACTGGAGAAAACTATTGGAAACAAATTGCCAATACCTGGGATCAAAATATCAACTTTAAAAATCTGGTTGGAATTTCAGAGTGATTCAAAACCTTACAAAAAAAAACTTATTCTATTCCACTCTAAACTGATATTAATTGTAAGAATCTTCAGGATACAAAAAGAAGAACTAGGCTTCCTCCAGAAAAGGAGTTCAGAGAACTCTGTGAAGGTTGCTAGGCGCGAAAAGCAGTATTTACGGCCCGTTGAACTCATTTAATATGCATCCGTCTGTCGCCTCTCTCCTCTTCGTTCTTGGGTTTTTCTCACATTTTACACTTTGGTCTCATTTTTGTAGGTTTTATTAGTATTTGTTAATGGTATCTAGAACTTTCCTGACTGGAGATCTAAAACTTTGGTCCGAAGGTTTGTAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTCACGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTTAAAAAAACTCGAGAAGTCCAGACAGAGCAAAAAGCGGCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAATATGTGGAAGTCTTTGCCAAGAAAACTCTTTTCTCTTTTTTTACGATGATGGGAAATGGACAATTTGTGGTCAGTTGGGGAGAGATGAAAGGATAAAAGCTGCTCTCTCCAGGATGTTCATTTTGTTTATTAGATGATGAAGAGAGGACAAAAAGTCGAGAAGAGGAAGACAAAGTATCGGATTTCGAATAGGGGATGGGAAGGTGTCCGGTGACTACAGAAAGGCAATTGTAA</canonical>
            <polymorphic>TCATATTAACCAAGATATAAAAACAGAGAAACAGAAGAAAATATGTTTAAATCAACATTTATGAAGTTTTTCAGGTGAGGCAAAAACCCCCCGCAAAACCTTTAGAAAAACGAAAAACCTCGCGAAAACTCTGGGGATGAACGAATCTGGGTGAAACTTTGTGGAAAACTGGAGAAAACTATTGGAAACAAATTGCCAATACCTGGGATCAAAATATCAACTTTAAAAATCTGGTTGGAATTTCAGAGTGATTCAAAACCTTACAAAAAAAAACTTATTCTATTCCACTCTAAACTGATATTAATTGTAAGAATCTTCAGGATACAAAAAGAAGAACTAGGCTTCCTCCAGAAAAGGAGTTCAGAGAACTCTGTGAAGGTTGCTAGGCGCGAAAAGCAGTATTTACGGCCCGTTGAACTCATTTAATATGCATCCGTCTGTCGCCTCTCTCCTCTTCGTTCTTGGGTTTTTCTCACATTTTACACTTTGGTCTCATTTTKGTAGGTTTTATTAGTATTTGTTAATGGTATCTAGAACTTTCCTGACTGGAGATCTAAAACTTTGGTCCGAAGGTTTGTAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTCACGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTTAAAAAAACTCGAGAAGTCCAGACAGAGCAAAAAGCGGCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAATATGTGGAAGTCTTTGCCAAGAAAACTCTTTTCTCTTTTTTTACGATGATGGGAAATGGACAATTTGTGGTCAGTTGGGGAGAGATGAAAGGATAAAAGCTGCTCTCTCCAGGATGTTCATTTTGTTTATTAGATGATGAAGAGAGGACAAAAAGTCGAGAAGAGGAAGACAAAGTATCGGATTTCGAATAGGGGATGGGAAGGTGTCCGGTGACTACAGAAAGGCAATTGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTCAGGATACAAAAAGAAGAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTTTTAGATCTCCAGTCAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTTCAGGATACAAAAAGAAGAACTAGGCTTCCTCCAGAAAAGGAGTTCAGAGAACTCTGTGAAGGTTGCTAGGCGCGAAAAGCAGTATTTACGGCCCGTTGAACTCATTTAATATGCATCCGTCTGTCGCCTCTCTCCTCTTCGTTCTTGGGTTTTTCTCACATTTTACACTTTGGTCTCATTTTTGTAGGTTTTATTAGTATTTGTTAATGGTATCTAGAACTTTCCTGACTGGAGATCTAAAACTTTG</canonical_amplicon>
		<polymorphic_amplicon>TCTTCAGGATACAAAAAGAAGAACTAGGCTTCCTCCAGAAAAGGAGTTCAGAGAACTCTGTGAAGGTTGCTAGGCGCGAAAAGCAGTATTTACGGCCCGTTGAACTCATTTAATATGCATCCGTCTGTCGCCTCTCTCCTCTTCGTTCTTGGGTTTTTCTCACATTTTACACTTTGGTCTCATTTTKGTAGGTTTTATTAGTATTTGTTAATGGTATCTAGAACTTTCCTGACTGGAGATCTAAAACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30023</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>115197</contig_pos>
        <strand>+</strand>
        <context>TTGTTAATGG[A/T]ATCTAGAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTACACTTTGGTCTCATTTTTGTAGGTTTTATTAGTATTTGTTAATGG</left_flank>
        <right_flank>ATCTAGAACTTTCCTGACTGGAGATCTAAAACTTTGGTCCGAAGGTTTGT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACAGAAGAAAATATGTTTAAATCAACATTTATGAAGTTTTTCAGGTGAGGCAAAAACCCCCCGCAAAACCTTTAGAAAAACGAAAAACCTCGCGAAAACTCTGGGGATGAACGAATCTGGGTGAAACTTTGTGGAAAACTGGAGAAAACTATTGGAAACAAATTGCCAATACCTGGGATCAAAATATCAACTTTAAAAATCTGGTTGGAATTTCAGAGTGATTCAAAACCTTACAAAAAAAAACTTATTCTATTCCACTCTAAACTGATATTAATTGTAAGAATCTTCAGGATACAAAAAGAAGAACTAGGCTTCCTCCAGAAAAGGAGTTCAGAGAACTCTGTGAAGGTTGCTAGGCGCGAAAAGCAGTATTTACGGCCCGTTGAACTCATTTAATATGCATCCGTCTGTCGCCTCTCTCCTCTTCGTTCTTGGGTTTTTCTCACATTTTACACTTTGGTCTCATTTTTGTAGGTTTTATTAGTATTTGTTAATGGTATCTAGAACTTTCCTGACTGGAGATCTAAAACTTTGGTCCGAAGGTTTGTAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTCACGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTTAAAAAAACTCGAGAAGTCCAGACAGAGCAAAAAGCGGCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAATATGTGGAAGTCTTTGCCAAGAAAACTCTTTTCTCTTTTTTTACGATGATGGGAAATGGACAATTTGTGGTCAGTTGGGGAGAGATGAAAGGATAAAAGCTGCTCTCTCCAGGATGTTCATTTTGTTTATTAGATGATGAAGAGAGGACAAAAAGTCGAGAAGAGGAAGACAAAGTATCGGATTTCGAATAGGGGATGGGAAGGTGTCCGGTGACTACAGAAAGGCAATTGTAACTGAAATAAAAGAGAAAGAAAGGAATGG</canonical>
            <polymorphic>AAACAGAAGAAAATATGTTTAAATCAACATTTATGAAGTTTTTCAGGTGAGGCAAAAACCCCCCGCAAAACCTTTAGAAAAACGAAAAACCTCGCGAAAACTCTGGGGATGAACGAATCTGGGTGAAACTTTGTGGAAAACTGGAGAAAACTATTGGAAACAAATTGCCAATACCTGGGATCAAAATATCAACTTTAAAAATCTGGTTGGAATTTCAGAGTGATTCAAAACCTTACAAAAAAAAACTTATTCTATTCCACTCTAAACTGATATTAATTGTAAGAATCTTCAGGATACAAAAAGAAGAACTAGGCTTCCTCCAGAAAAGGAGTTCAGAGAACTCTGTGAAGGTTGCTAGGCGCGAAAAGCAGTATTTACGGCCCGTTGAACTCATTTAATATGCATCCGTCTGTCGCCTCTCTCCTCTTCGTTCTTGGGTTTTTCTCACATTTTACACTTTGGTCTCATTTTTGTAGGTTTTATTAGTATTTGTTAATGGWATCTAGAACTTTCCTGACTGGAGATCTAAAACTTTGGTCCGAAGGTTTGTAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTCACGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTTAAAAAAACTCGAGAAGTCCAGACAGAGCAAAAAGCGGCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAATATGTGGAAGTCTTTGCCAAGAAAACTCTTTTCTCTTTTTTTACGATGATGGGAAATGGACAATTTGTGGTCAGTTGGGGAGAGATGAAAGGATAAAAGCTGCTCTCTCCAGGATGTTCATTTTGTTTATTAGATGATGAAGAGAGGACAAAAAGTCGAGAAGAGGAAGACAAAGTATCGGATTTCGAATAGGGGATGGGAAGGTGTCCGGTGACTACAGAAAGGCAATTGTAACTGAAATAAAAGAGAAAGAAAGGAATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTAATATGCATCCGTCTGTC</pcr_primer_p1>
		<pcr_primer_p2>AATTAAATTTTGTCGTGTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATTTAATATGCATCCGTCTGTCGCCTCTCTCCTCTTCGTTCTTGGGTTTTTCTCACATTTTACACTTTGGTCTCATTTTTGTAGGTTTTATTAGTATTTGTTAATGGTATCTAGAACTTTCCTGACTGGAGATCTAAAACTTTGGTCCGAAGGTTTGTAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTCACGAATTATAAAATGAAACACGACAAAATTTAATT</canonical_amplicon>
		<polymorphic_amplicon>ATTTAATATGCATCCGTCTGTCGCCTCTCTCCTCTTCGTTCTTGGGTTTTTCTCACATTTTACACTTTGGTCTCATTTTTGTAGGTTTTATTAGTATTTGTTAATGGWATCTAGAACTTTCCTGACTGGAGATCTAAAACTTTGGTCCGAAGGTTTGTAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTCACGAATTATAAAATGAAACACGACAAAATTTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30024</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>115378</contig_pos>
        <strand>+</strand>
        <context>CAGACAGAGC[A/G]AAAAGCGRCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATTTGAGCCAATTTATAGTTAAAAAAACTCGAGAAGTCCAGACAGAGC</left_flank>
        <right_flank>AAAAGCGGCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAATATCAACTTTAAAAATCTGGTTGGAATTTCAGAGTGATTCAAAACCTTACAAAAAAAAACTTATTCTATTCCACTCTAAACTGATATTAATTGTAAGAATCTTCAGGATACAAAAAGAAGAACTAGGCTTCCTCCAGAAAAGGAGTTCAGAGAACTCTGTGAAGGTTGCTAGGCGCGAAAAGCAGTATTTACGGCCCGTTGAACTCATTTAATATGCATCCGTCTGTCGCCTCTCTCCTCTTCGTTCTTGGGTTTTTCTCACATTTTACACTTTGGTCTCATTTTTGTAGGTTTTATTAGTATTTGTTAATGGTATCTAGAACTTTCCTGACTGGAGATCTAAAACTTTGGTCCGAAGGTTTGTAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTCACGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTTAAAAAAACTCGAGAAGTCCAGACAGAGCAAAAAGCGGCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAATATGTGGAAGTCTTTGCCAAGAAAACTCTTTTCTCTTTTTTTACGATGATGGGAAATGGACAATTTGTGGTCAGTTGGGGAGAGATGAAAGGATAAAAGCTGCTCTCTCCAGGATGTTCATTTTGTTTATTAGATGATGAAGAGAGGACAAAAAGTCGAGAAGAGGAAGACAAAGTATCGGATTTCGAATAGGGGATGGGAAGGTGTCCGGTGACTACAGAAAGGCAATTGTAACTGAAATAAAAGAGAAAGAAAGGAATGGAAAAATATTCAAATTGAATGCAAATTTAGATATTTATTTTGTTGCCACCAACCACCCAAAAATGGTCTCATCCAGAAGAAAAAGAGGAAAGAAGGAATCATGTAGAAATAGAGAAGAGTGATAAGAGAACGAGAGGGAATCACAGCAGGGCGAAGTGATGAAAAGGTAGATGATGCCTTAT</canonical>
            <polymorphic>CAAAATATCAACTTTAAAAATCTGGTTGGAATTTCAGAGTGATTCAAAACCTTACAAAAAAAAACTTATTCTATTCCACTCTAAACTGATATTAATTGTAAGAATCTTCAGGATACAAAAAGAAGAACTAGGCTTCCTCCAGAAAAGGAGTTCAGAGAACTCTGTGAAGGTTGCTAGGCGCGAAAAGCAGTATTTACGGCCCGTTGAACTCATTTAATATGCATCCGTCTGTCGCCTCTCTCCTCTTCGTTCTTGGGTTTTTCTCACATTTTACACTTTGGTCTCATTTTTGTAGGTTTTATTAGTATTTGTTAATGGTATCTAGAACTTTCCTGACTGGAGATCTAAAACTTTGGTCCGAAGGTTTGTAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTCACGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTTAAAAAAACTCGAGAAGTCCAGACAGAGCRAAAAGCGGCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAATATGTGGAAGTCTTTGCCAAGAAAACTCTTTTCTCTTTTTTTACGATGATGGGAAATGGACAATTTGTGGTCAGTTGGGGAGAGATGAAAGGATAAAAGCTGCTCTCTCCAGGATGTTCATTTTGTTTATTAGATGATGAAGAGAGGACAAAAAGTCGAGAAGAGGAAGACAAAGTATCGGATTTCGAATAGGGGATGGGAAGGTGTCCGGTGACTACAGAAAGGCAATTGTAACTGAAATAAAAGAGAAAGAAAGGAATGGAAAAATATTCAAATTGAATGCAAATTTAGATATTTATTTTGTTGCCACCAACCACCCAAAAATGGTCTCATCCAGAAGAAAAAGAGGAAAGAAGGAATCATGTAGAAATAGAGAAGAGTGATAAGAGAACGAGAGGGAATCACAGCAGGGCGAAGTGATGAAAAGGTAGATGATGCCTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGAACTTTCCTGACTGGAGAT</pcr_primer_p1>
		<pcr_primer_p2>ACATATTGTGGGCTGTACTAACT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CTAGAACTTTCCTGACTGGAGATCTAAAACTTTGGTCCGAAGGTTTGTAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTCACGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTTAAAAAAACTCGAGAAGTCCAGACAGAGCAAAAAGCGGCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAATATGT</canonical_amplicon>
		<polymorphic_amplicon>CTAGAACTTTCCTGACTGGAGATCTAAAACTTTGGTCCGAAGGTTTGTAGAAGAAAATCTTGTCAGAAGATTTTTGTAGGAGAATCAAATCAAACCTCACGAATTATAAAATGAAACACGACAAAATTTAATTTGAGCCAATTTATAGTTAAAAAAACTCGAGAAGTCCAGACAGAGCRAAAAGCGGCTGAAAAAAAGAAAAGGTAGAGTGCACGACTAGTTAGTACAGCCCACAATATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30025</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>197792</contig_pos>
        <strand>+</strand>
        <context>CAGGTTTCTA[A/G]AATTTTCCGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCTTCATCGGCCGAAGATCGATACTATTTTAGAGTAATCCAGGTTTCTA</left_flank>
        <right_flank>AATTTTCCGCTGTTTCAAAGTATTCATAAAGATTTCGGAGCTACTTTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTCCAAAATTCTAACATAACGCCATCCTATACTTTCACTTTGAGACCAATTATCTCAATTTCTTTACGAGATATCAAAAATCCGTCAACTTATAACATGTTTGTCATAGTAGCACCAATATTTTATCTGTTGACAGATTTTTCAAAGCTCTACTCAAATTGAGATAACTGAGCTCCGCTTGTGATGACGTAAATAAAGTATTACTTATTGAACTGAGAAATTTCAGCTCTTTTCGATTTTCCGGTTCCCAAGTTTTCCAATTTCGAATACAAGTCTCTCCTAGATATAATCTTTTTAAAAAAACTGCTGAAGATCAGCCTCAAACACCTACACCATTGATCTTCGACATAAAGCAGACATATGTCGCGAAGAAGAAGACCTGAAGAGATAAACGATCTACCGTGAAGAATCTCAACCCATCAAAACAAGCAAATCTTCCCTAGATCTAGCTTCATCGGCCGAAGATCGATACTATTTTAGAGTAATCCAGGTTTCTAAAATTTTCCGCTGTTTCAAAGTATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGAAAAATGAATTATGAAATCAGTTATTAATTTGATTTTACGATTTTCGAGATTTTCAGAGTTCCTCGTACTTATAGATTATAGACCTCTGATCTACTACCAGACCGTAGACACCGATCCCTATCAGCTCTAGATCTTCCCTTTCGTCTCTTCTTTCATGCGAGGGTATCTTATTTTTCCCTTACACTACCGATTCCTGCCCGATTTTTTCATCCAGGCCTCCCATTCCTAGAAAACGAAACTCTAGTCTTTCTATCCTCGGAATATCCGGATATTAGATCTTATGGTATTTCTAATGAGAAAGTCTTTTGAACGGTTTCGAACACTAGTTTTTCGTGCTATCTGGTAGATCAAAAGAGAAATTATGTCAAGATTTTCCGAGAA</canonical>
            <polymorphic>ACCTCCAAAATTCTAACATAACGCCATCCTATACTTTCACTTTGAGACCAATTATCTCAATTTCTTTACGAGATATCAAAAATCCGTCAACTTATAACATGTTTGTCATAGTAGCACCAATATTTTATCTGTTGACAGATTTTTCAAAGCTCTACTCAAATTGAGATAACTGAGCTCCGCTTGTGATGACGTAAATAAAGTATTACTTATTGAACTGAGAAATTTCAGCTCTTTTCGATTTTCCGGTTCCCAAGTTTTCCAATTTCGAATACAAGTCTCTCCTAGATATAATCTTTTTAAAAAAACTGCTGAAGATCAGCCTCAAACACCTACACCATTGATCTTCGACATAAAGCAGACATATGTCGCGAAGAAGAAGACCTGAAGAGATAAACGATCTACCGTGAAGAATCTCAACCCATCAAAACAAGCAAATCTTCCCTAGATCTAGCTTCATCGGCCGAAGATCGATACTATTTTAGAGTAATCCAGGTTTCTARAATTTTCCGCTGTTTCAAAGTATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGAAAAATGAATTATGAAATCAGTTATTAATTTGATTTTACGATTTTCGAGATTTTCAGAGTTCCTCGTACTTATAGATTATAGACCTCTGATCTACTACCAGACCGTAGACACCGATCCCTATCAGCTCTAGATCTTCCCTTTCGTCTCTTCTTTCATGCGAGGGTATCTTATTTTTCCCTTACACTACCGATTCCTGCCCGATTTTTTCATCCAGGCCTCCCATTCCTAGAAAACGAAACTCTAGTCTTTCTATCCTCGGAATATCCGGATATTAGATCTTATGGTATTTCTAATGAGAAAGTCTTTTGAACGGTTTCGAACACTAGTTTTTCGTGCTATCTGGTAGATCAAAAGAGAAATTATGTCAAGATTTTCCGAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>500 280 212 8</canonical_bands>
                <polymorphic_bands>780 212 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGAAGAAGACCTGAAGAGATAA</pcr_primer_p1>
		<pcr_primer_p2>TCTTTTCAAAACTTGATGATAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGAAGAAGACCTGAAGAGATAAACGATCTACCGTGAAGAATCTCAACCCATCAAAACAAGCAAATCTTCCCTAGATCTAGCTTCATCGGCCGAAGATCGATACTATTTTAGAGTAATCCAGGTTTCTAAAATTTTCCGCTGTTTCAAAGTATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GAAGAAGAAGACCTGAAGAGATAAACGATCTACCGTGAAGAATCTCAACCCATCAAAACAAGCAAATCTTCCCTAGATCTAGCTTCATCGGCCGAAGATCGATACTATTTTAGAGTAATCCAGGTTTCTARAATTTTCCGCTGTTTCAAAGTATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30026</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>197807</contig_pos>
        <strand>+</strand>
        <context>TTCCGCTGTT[C/T]CAAAGTATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGATCGATACTATTTTAGAGTAATCCAGGTTTCTAAAATTTTCCGCTGTT</left_flank>
        <right_flank>CAAAGTATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCAC</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATAACGCCATCCTATACTTTCACTTTGAGACCAATTATCTCAATTTCTTTACGAGATATCAAAAATCCGTCAACTTATAACATGTTTGTCATAGTAGCACCAATATTTTATCTGTTGACAGATTTTTCAAAGCTCTACTCAAATTGAGATAACTGAGCTCCGCTTGTGATGACGTAAATAAAGTATTACTTATTGAACTGAGAAATTTCAGCTCTTTTCGATTTTCCGGTTCCCAAGTTTTCCAATTTCGAATACAAGTCTCTCCTAGATATAATCTTTTTAAAAAAACTGCTGAAGATCAGCCTCAAACACCTACACCATTGATCTTCGACATAAAGCAGACATATGTCGCGAAGAAGAAGACCTGAAGAGATAAACGATCTACCGTGAAGAATCTCAACCCATCAAAACAAGCAAATCTTCCCTAGATCTAGCTTCATCGGCCGAAGATCGATACTATTTTAGAGTAATCCAGGTTTCTAAAATTTTCCGCTGTTTCAAAGTATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGAAAAATGAATTATGAAATCAGTTATTAATTTGATTTTACGATTTTCGAGATTTTCAGAGTTCCTCGTACTTATAGATTATAGACCTCTGATCTACTACCAGACCGTAGACACCGATCCCTATCAGCTCTAGATCTTCCCTTTCGTCTCTTCTTTCATGCGAGGGTATCTTATTTTTCCCTTACACTACCGATTCCTGCCCGATTTTTTCATCCAGGCCTCCCATTCCTAGAAAACGAAACTCTAGTCTTTCTATCCTCGGAATATCCGGATATTAGATCTTATGGTATTTCTAATGAGAAAGTCTTTTGAACGGTTTCGAACACTAGTTTTTCGTGCTATCTGGTAGATCAAAAGAGAAATTATGTCAAGATTTTCCGAGAAATTCAAAGTTACTAC</canonical>
            <polymorphic>ACATAACGCCATCCTATACTTTCACTTTGAGACCAATTATCTCAATTTCTTTACGAGATATCAAAAATCCGTCAACTTATAACATGTTTGTCATAGTAGCACCAATATTTTATCTGTTGACAGATTTTTCAAAGCTCTACTCAAATTGAGATAACTGAGCTCCGCTTGTGATGACGTAAATAAAGTATTACTTATTGAACTGAGAAATTTCAGCTCTTTTCGATTTTCCGGTTCCCAAGTTTTCCAATTTCGAATACAAGTCTCTCCTAGATATAATCTTTTTAAAAAAACTGCTGAAGATCAGCCTCAAACACCTACACCATTGATCTTCGACATAAAGCAGACATATGTCGCGAAGAAGAAGACCTGAAGAGATAAACGATCTACCGTGAAGAATCTCAACCCATCAAAACAAGCAAATCTTCCCTAGATCTAGCTTCATCGGCCGAAGATCGATACTATTTTAGAGTAATCCAGGTTTCTAAAATTTTCCGCTGTTYCAAAGTATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGAAAAATGAATTATGAAATCAGTTATTAATTTGATTTTACGATTTTCGAGATTTTCAGAGTTCCTCGTACTTATAGATTATAGACCTCTGATCTACTACCAGACCGTAGACACCGATCCCTATCAGCTCTAGATCTTCCCTTTCGTCTCTTCTTTCATGCGAGGGTATCTTATTTTTCCCTTACACTACCGATTCCTGCCCGATTTTTTCATCCAGGCCTCCCATTCCTAGAAAACGAAACTCTAGTCTTTCTATCCTCGGAATATCCGGATATTAGATCTTATGGTATTTCTAATGAGAAAGTCTTTTGAACGGTTTCGAACACTAGTTTTTCGTGCTATCTGGTAGATCAAAAGAGAAATTATGTCAAGATTTTCCGAGAAATTCAAAGTTACTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGAAGAAGACCTGAAGAGATAA</pcr_primer_p1>
		<pcr_primer_p2>TCTTTTCAAAACTTGATGATAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGAAGAAGACCTGAAGAGATAAACGATCTACCGTGAAGAATCTCAACCCATCAAAACAAGCAAATCTTCCCTAGATCTAGCTTCATCGGCCGAAGATCGATACTATTTTAGAGTAATCCAGGTTTCTAAAATTTTCCGCTGTTTCAAAGTATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GAAGAAGAAGACCTGAAGAGATAAACGATCTACCGTGAAGAATCTCAACCCATCAAAACAAGCAAATCTTCCCTAGATCTAGCTTCATCGGCCGAAGATCGATACTATTTTAGAGTAATCCAGGTTTCTAAAATTTTCCGCTGTTYCAAAGTATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30027</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>197963</contig_pos>
        <strand>+</strand>
        <context>TTTCGAGATT[A/T]TCAGAGTTYC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATGAATTATGAAATCAGTTATTAATTTGATTTTACGATTTTCGAGATT</left_flank>
        <right_flank>TCAGAGTTCCTCGTACTTATAGATTATAGACCTCTGATCTACTACCAGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCTCCGCTTGTGATGACGTAAATAAAGTATTACTTATTGAACTGAGAAATTTCAGCTCTTTTCGATTTTCCGGTTCCCAAGTTTTCCAATTTCGAATACAAGTCTCTCCTAGATATAATCTTTTTAAAAAAACTGCTGAAGATCAGCCTCAAACACCTACACCATTGATCTTCGACATAAAGCAGACATATGTCGCGAAGAAGAAGACCTGAAGAGATAAACGATCTACCGTGAAGAATCTCAACCCATCAAAACAAGCAAATCTTCCCTAGATCTAGCTTCATCGGCCGAAGATCGATACTATTTTAGAGTAATCCAGGTTTCTAAAATTTTCCGCTGTTTCAAAGTATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGAAAAATGAATTATGAAATCAGTTATTAATTTGATTTTACGATTTTCGAGATTTTCAGAGTTCCTCGTACTTATAGATTATAGACCTCTGATCTACTACCAGACCGTAGACACCGATCCCTATCAGCTCTAGATCTTCCCTTTCGTCTCTTCTTTCATGCGAGGGTATCTTATTTTTCCCTTACACTACCGATTCCTGCCCGATTTTTTCATCCAGGCCTCCCATTCCTAGAAAACGAAACTCTAGTCTTTCTATCCTCGGAATATCCGGATATTAGATCTTATGGTATTTCTAATGAGAAAGTCTTTTGAACGGTTTCGAACACTAGTTTTTCGTGCTATCTGGTAGATCAAAAGAGAAATTATGTCAAGATTTTCCGAGAAATTCAAAGTTACTACGGTACCATGCTCCTGTAAAAGTCATCATGGTGTTTCAAAATTTTACGTCATTGTCAGCCTTTTTATCCAGAGGAGCCTTGATTTCTGGAAATGTCATCAAACAAGTTGGGGTGGCTCCAGCACTCGAGACTTGCAATTTTGAATTGTCTAGAATTA</canonical>
            <polymorphic>GAGCTCCGCTTGTGATGACGTAAATAAAGTATTACTTATTGAACTGAGAAATTTCAGCTCTTTTCGATTTTCCGGTTCCCAAGTTTTCCAATTTCGAATACAAGTCTCTCCTAGATATAATCTTTTTAAAAAAACTGCTGAAGATCAGCCTCAAACACCTACACCATTGATCTTCGACATAAAGCAGACATATGTCGCGAAGAAGAAGACCTGAAGAGATAAACGATCTACCGTGAAGAATCTCAACCCATCAAAACAAGCAAATCTTCCCTAGATCTAGCTTCATCGGCCGAAGATCGATACTATTTTAGAGTAATCCAGGTTTCTAAAATTTTCCGCTGTTTCAAAGTATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGAAAAATGAATTATGAAATCAGTTATTAATTTGATTTTACGATTTTCGAGATTWTCAGAGTTCCTCGTACTTATAGATTATAGACCTCTGATCTACTACCAGACCGTAGACACCGATCCCTATCAGCTCTAGATCTTCCCTTTCGTCTCTTCTTTCATGCGAGGGTATCTTATTTTTCCCTTACACTACCGATTCCTGCCCGATTTTTTCATCCAGGCCTCCCATTCCTAGAAAACGAAACTCTAGTCTTTCTATCCTCGGAATATCCGGATATTAGATCTTATGGTATTTCTAATGAGAAAGTCTTTTGAACGGTTTCGAACACTAGTTTTTCGTGCTATCTGGTAGATCAAAAGAGAAATTATGTCAAGATTTTCCGAGAAATTCAAAGTTACTACGGTACCATGCTCCTGTAAAAGTCATCATGGTGTTTCAAAATTTTACGTCATTGTCAGCCTTTTTATCCAGAGGAGCCTTGATTTCTGGAAATGTCATCAAACAAGTTGGGGTGGCTCCAGCACTCGAGACTTGCAATTTTGAATTGTCTAGAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTCATAAAGATTTCGGAGCTA</pcr_primer_p1>
		<pcr_primer_p2>AAAGGGAAGATCTAGAGCTGATA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGAAAAATGAATTATGAAATCAGTTATTAATTTGATTTTACGATTTTCGAGATTTTCAGAGTTCCTCGTACTTATAGATTATAGACCTCTGATCTACTACCAGACCGTAGACACCGATCCCTATCAGCTCTAGATCTTCCCTTT</canonical_amplicon>
		<polymorphic_amplicon>TATTCATAAAGATTTCGGAGCTACTTTGAACATCGTTGACACCACTCCTTTGTGATTCCACTATTAAAATATACCACCTATCATCAAGTTTTGAAAAGAAAAATGAATTATGAAATCAGTTATTAATTTGATTTTACGATTTTCGAGATTWTCAGAGTTCCTCGTACTTATAGATTATAGACCTCTGATCTACTACCAGACCGTAGACACCGATCCCTATCAGCTCTAGATCTTCCCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30028</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>256570</contig_pos>
        <strand></strand>
        <context>gAAATACAGT[A/T]TCTTTGTTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGAGCTCAAATTTGACGGTTTGAGTGGGCTTTTATTAGAGGAAATACAGT</left_flank>
        <right_flank>TCTTTGTTAAAGGATTTGCACACAAAAGATGACAACTACAAAAATGGAGT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGTCTAGTATTTAGTGTCTTTTTTCGAATATCAGGAAGAAAATGAGTCATAAGTCTAGAGGGGAACTGAAAGTCATGGGACAAGTAGTTACAGTTTCAAAATATCAATTCCATAGGTTATACACAGCTAAAGTGCTCAATGTATGGCGCTTTCAGTATCTGAAAAATATTTTTAAGTAAAAAAATCTCTGAAATTTTCAGATTTAGTAATTTTGTAATTGAAGCTTTTTTGATAATTTTGTCCCAATCAAATGTTGTGCATTTTTTAGTTTAAGACGGCACATCTTATTTGCTCCAATGGAAAAAAAACTATCGACTTTGAGATTATATATCTCGGTTCTTTCAAAACGTATCAAAGAGTGGTCAACTGATAAAACATTGGTGTTATTATGATAAATGTTTTGTCAGTATACCACGTTTTGATATCTATTACAGGAGTTGTGACAATCGAGCTCAAATTTGACGGTTTGAGTGGGCTTTTATTAGAGGAAATACAGTATCTTTGTTAAAGGATTTGCACACAAAAGATGACAACTACAAAAATGGAGTTCTATCGTATTTATGTGGTTGTGTCTGAAAAATTTAATCGTCAAATTTCAAAAATTGAAAAATTATATTCCTACACCACGCCAATCGCTTCAGTGACAAAAATTCCGAATAGCGTACCGTAATTCCTTTAATAGAAGCTCAAAAGAAGCACCGTCCACTTTGAGCTCAATTATCTCGGTCCCTTCATAATATGTCAAAATAGTTCAACTAATATGATATTTATCATAACATCACCATCATTTTATCCGTTGACAAAGTTTTGATATCTGTTTCAGAAATTGACATAATTGAGCTCAAATTGCAAATATAGGGTGCGCTTCTATTAGATCAAATACGACAACCATCATTTTCCAGGCAGGTTTTCTCGTTTCCTGTGAAAGATTTTGAGAATTAGTCAACTGATAGAATACGTTTGATGTTACGAGAAACGTTTTTTTAGTTGACTACTTT</canonical>
            <polymorphic>TAAGTCTAGTATTTAGTGTCTTTTTTCGAATATCAGGAAGAAAATGAGTCATAAGTCTAGAGGGGAACTGAAAGTCATGGGACAAGTAGTTACAGTTTCAAAATATCAATTCCATAGGTTATACACAGCTAAAGTGCTCAATGTATGGCGCTTTCAGTATCTGAAAAATATTTTTAAGTAAAAAAATCTCTGAAATTTTCAGATTTAGTAATTTTGTAATTGAAGCTTTTTTGATAATTTTGTCCCAATCAAATGTTGTGCATTTTTTAGTTTAAGACGGCACATCTTATTTGCTCCAATGGAAAAAAAACTATCGACTTTGAGATTATATATCTCGGTTCTTTCAAAACGTATCAAAGAGTGGTCAACTGATAAAACATTGGTGTTATTATGATAAATGTTTTGTCAGTATACCACGTTTTGATATCTATTACAGGAGTTGTGACAATCGAGCTCAAATTTGACGGTTTGAGTGGGCTTTTATTAGAGGAAATACAGTWTCTTTGTTAAAGGATTTGCACACAAAAGATGACAACTACAAAAATGGAGTTCTATCGTATTTATGTGGTTGTGTCTGAAAAATTTAATCGTCAAATTTCAAAAATTGAAAAATTATATTCCTACACCACGCCAATCGCTTCAGTGACAAAAATTCCGAATAGCGTACCGTAATTCCTTTAATAGAAGCTCAAAAGAAGCACCGTCCACTTTGAGCTCAATTATCTCGGTCCCTTCATAATATGTCAAAATAGTTCAACTAATATGATATTTATCATAACATCACCATCATTTTATCCGTTGACAAAGTTTTGATATCTGTTTCAGAAATTGACATAATTGAGCTCAAATTGCAAATATAGGGTGCGCTTCTATTAGATCAAATACGACAACCATCATTTTCCAGGCAGGTTTTCTCGTTTCCTGTGAAAGATTTTGAGAATTAGTCAACTGATAGAATACGTTTGATGTTACGAGAAACGTTTTTTTAGTTGACTACTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACATCTTATTTGCTCCAATG</pcr_primer_p1>
		<pcr_primer_p2>ACGATAGAACTCCATTTTTGTAG</pcr_primer_p2>
		<pcr_amplicon_size>278</pcr_amplicon_size>
		<canonical_amplicon>CACATCTTATTTGCTCCAATGGAAAAAAAACTATCGACTTTGAGATTATATATCTCGGTTCTTTCAAAACGTATCAAAGAGTGGTCAACTGATAAAACATTGGTGTTATTATGATAAATGTTTTGTCAGTATACCACGTTTTGATATCTATTACAGGAGTTGTGACAATCGAGCTCAAATTTGACGGTTTGAGTGGGCTTTTATTAGAGGAAATACAGTATCTTTGTTAAAGGATTTGCACACAAAAGATGACAACTACAAAAATGGAGTTCTATCGT</canonical_amplicon>
		<polymorphic_amplicon>CACATCTTATTTGCTCCAATGGAAAAAAAACTATCGACTTTGAGATTATATATCTCGGTTCTTTCAAAACGTATCAAAGAGTGGTCAACTGATAAAACATTGGTGTTATTATGATAAATGTTTTGTCAGTATACCACGTTTTGATATCTATTACAGGAGTTGTGACAATCGAGCTCAAATTTGACGGTTTGAGTGGGCTTTTATTAGAGGAAATACAGTWTCTTTGTTAAAGGATTTGCACACAAAAGATGACAACTACAAAAATGGAGTTCTATCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30029</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>256807</contig_pos>
        <strand></strand>
        <context>ggtcccttca[T/A]aatatgtcaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GCTCAAAAGAAGCACCGTCCACTTTGAGCTCAATTATCTCGGTCCCTTCA</left_flank>
        <right_flank>AATATGTCAAAATAGTTCAACTAATATGATATTTATCATAACATCACCAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGTCCCAATCAAATGTTGTGCATTTTTTAGTTTAAGACGGCACATCTTATTTGCTCCAATGGAAAAAAAACTATCGACTTTGAGATTATATATCTCGGTTCTTTCAAAACGTATCAAAGAGTGGTCAACTGATAAAACATTGGTGTTATTATGATAAATGTTTTGTCAGTATACCACGTTTTGATATCTATTACAGGAGTTGTGACAATCGAGCTCAAATTTGACGGTTTGAGTGGGCTTTTATTAGAGGAAATACAGTATCTTTGTTAAAGGATTTGCACACAAAAGATGACAACTACAAAAATGGAGTTCTATCGTATTTATGTGGTTGTGTCTGAAAAATTTAATCGTCAAATTTCAAAAATTGAAAAATTATATTCCTACACCACGCCAATCGCTTCAGTGACAAAAATTCCGAATAGCGTACCGTAATTCCTTTAATAGAAGCTCAAAAGAAGCACCGTCCACTTTGAGCTCAATTATCTCGGTCCCTTCATAATATGTCAAAATAGTTCAACTAATATGATATTTATCATAACATCACCATCATTTTATCCGTTGACAAAGTTTTGATATCTGTTTCAGAAATTGACATAATTGAGCTCAAATTGCAAATATAGGGTGCGCTTCTATTAGATCAAATACGACAACCATCATTTTCCAGGCAGGTTTTCTCGTTTCCTGTGAAAGATTTTGAGAATTAGTCAACTGATAGAATACGTTTGATGTTACGAGAAACGTTTTTTTAGTTGACTACTTTTTGCTATCTTTCACAGGGACCAAGATAAATTGGCTTACAGTTAGCGACTAAACGAGGCCGGGCTAAAAATTTGAGTTTCTTTCACAAAAATCCTGAAACCGTAACGTTTTTTTTTTCAACTTTCTAAATTCCGATATTTATACCAACCCAATCGACTTATTGACTAAAATTTTCTGAACTCATAATTCGAAATCACAGATGAATATTGAAATTTCTTACTATTAGTTTATTCCTATT</canonical>
            <polymorphic>TTTTGTCCCAATCAAATGTTGTGCATTTTTTAGTTTAAGACGGCACATCTTATTTGCTCCAATGGAAAAAAAACTATCGACTTTGAGATTATATATCTCGGTTCTTTCAAAACGTATCAAAGAGTGGTCAACTGATAAAACATTGGTGTTATTATGATAAATGTTTTGTCAGTATACCACGTTTTGATATCTATTACAGGAGTTGTGACAATCGAGCTCAAATTTGACGGTTTGAGTGGGCTTTTATTAGAGGAAATACAGTATCTTTGTTAAAGGATTTGCACACAAAAGATGACAACTACAAAAATGGAGTTCTATCGTATTTATGTGGTTGTGTCTGAAAAATTTAATCGTCAAATTTCAAAAATTGAAAAATTATATTCCTACACCACGCCAATCGCTTCAGTGACAAAAATTCCGAATAGCGTACCGTAATTCCTTTAATAGAAGCTCAAAAGAAGCACCGTCCACTTTGAGCTCAATTATCTCGGTCCCTTCAWAATATGTCAAAATAGTTCAACTAATATGATATTTATCATAACATCACCATCATTTTATCCGTTGACAAAGTTTTGATATCTGTTTCAGAAATTGACATAATTGAGCTCAAATTGCAAATATAGGGTGCGCTTCTATTAGATCAAATACGACAACCATCATTTTCCAGGCAGGTTTTCTCGTTTCCTGTGAAAGATTTTGAGAATTAGTCAACTGATAGAATACGTTTGATGTTACGAGAAACGTTTTTTTAGTTGACTACTTTTTGCTATCTTTCACAGGGACCAAGATAAATTGGCTTACAGTTAGCGACTAAACGAGGCCGGGCTAAAAATTTGAGTTTCTTTCACAAAAATCCTGAAACCGTAACGTTTTTTTTTTCAACTTTCTAAATTCCGATATTTATACCAACCCAATCGACTTATTGACTAAAATTTTCTGAACTCATAATTCGAAATCACAGATGAATATTGAAATTTCTTACTATTAGTTTATTCCTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACAAAAATTCCGAATAGC</pcr_primer_p1>
		<pcr_primer_p2>GATTTTTGTGAAAGAAACTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>449</pcr_amplicon_size>
		<canonical_amplicon>TGACAAAAATTCCGAATAGCGTACCGTAATTCCTTTAATAGAAGCTCAAAAGAAGCACCGTCCACTTTGAGCTCAATTATCTCGGTCCCTTCATAATATGTCAAAATAGTTCAACTAATATGATATTTATCATAACATCACCATCATTTTATCCGTTGACAAAGTTTTGATATCTGTTTCAGAAATTGACATAATTGAGCTCAAATTGCAAATATAGGGTGCGCTTCTATTAGATCAAATACGACAACCATCATTTTCCAGGCAGGTTTTCTCGTTTCCTGTGAAAGATTTTGAGAATTAGTCAACTGATAGAATACGTTTGATGTTACGAGAAACGTTTTTTTAGTTGACTACTTTTTGCTATCTTTCACAGGGACCAAGATAAATTGGCTTACAGTTAGCGACTAAACGAGGCCGGGCTAAAAATTTGAGTTTCTTTCACAAAAATC</canonical_amplicon>
		<polymorphic_amplicon>TGACAAAAATTCCGAATAGCGTACCGTAATTCCTTTAATAGAAGCTCAAAAGAAGCACCGTCCACTTTGAGCTCAATTATCTCGGTCCCTTCAWAATATGTCAAAATAGTTCAACTAATATGATATTTATCATAACATCACCATCATTTTATCCGTTGACAAAGTTTTGATATCTGTTTCAGAAATTGACATAATTGAGCTCAAATTGCAAATATAGGGTGCGCTTCTATTAGATCAAATACGACAACCATCATTTTCCAGGCAGGTTTTCTCGTTTCCTGTGAAAGATTTTGAGAATTAGTCAACTGATAGAATACGTTTGATGTTACGAGAAACGTTTTTTTAGTTGACTACTTTTTGCTATCTTTCACAGGGACCAAGATAAATTGGCTTACAGTTAGCGACTAAACGAGGCCGGGCTAAAAATTTGAGTTTCTTTCACAAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30030</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>256907</contig_pos>
        <strand></strand>
        <context>aattgacata[A/T]ttgagctcaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCATTTTATCCGTTGACAAAGTTTTGATATCTGTTTCAGAAATTGACATA</left_flank>
        <right_flank>TTGAGCTCAAATTGCAAATATAGGGTGCGCTTCTATTAGATCAAATACGA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCTTTCAAAACGTATCAAAGAGTGGTCAACTGATAAAACATTGGTGTTATTATGATAAATGTTTTGTCAGTATACCACGTTTTGATATCTATTACAGGAGTTGTGACAATCGAGCTCAAATTTGACGGTTTGAGTGGGCTTTTATTAGAGGAAATACAGTATCTTTGTTAAAGGATTTGCACACAAAAGATGACAACTACAAAAATGGAGTTCTATCGTATTTATGTGGTTGTGTCTGAAAAATTTAATCGTCAAATTTCAAAAATTGAAAAATTATATTCCTACACCACGCCAATCGCTTCAGTGACAAAAATTCCGAATAGCGTACCGTAATTCCTTTAATAGAAGCTCAAAAGAAGCACCGTCCACTTTGAGCTCAATTATCTCGGTCCCTTCATAATATGTCAAAATAGTTCAACTAATATGATATTTATCATAACATCACCATCATTTTATCCGTTGACAAAGTTTTGATATCTGTTTCAGAAATTGACATAATTGAGCTCAAATTGCAAATATAGGGTGCGCTTCTATTAGATCAAATACGACAACCATCATTTTCCAGGCAGGTTTTCTCGTTTCCTGTGAAAGATTTTGAGAATTAGTCAACTGATAGAATACGTTTGATGTTACGAGAAACGTTTTTTTAGTTGACTACTTTTTGCTATCTTTCACAGGGACCAAGATAAATTGGCTTACAGTTAGCGACTAAACGAGGCCGGGCTAAAAATTTGAGTTTCTTTCACAAAAATCCTGAAACCGTAACGTTTTTTTTTTCAACTTTCTAAATTCCGATATTTATACCAACCCAATCGACTTATTGACTAAAATTTTCTGAACTCATAATTCGAAATCACAGATGAATATTGAAATTTCTTACTATTAGTTTATTCCTATTAGCTTGATAATGCGAGGATGCTCGATTCGAAGCCCAAAGATCATTCTAGATAACCAAATGACTCATCCATTACATAGCTAACCAACCATTCCTAAAGCCT</canonical>
            <polymorphic>GTTCTTTCAAAACGTATCAAAGAGTGGTCAACTGATAAAACATTGGTGTTATTATGATAAATGTTTTGTCAGTATACCACGTTTTGATATCTATTACAGGAGTTGTGACAATCGAGCTCAAATTTGACGGTTTGAGTGGGCTTTTATTAGAGGAAATACAGTATCTTTGTTAAAGGATTTGCACACAAAAGATGACAACTACAAAAATGGAGTTCTATCGTATTTATGTGGTTGTGTCTGAAAAATTTAATCGTCAAATTTCAAAAATTGAAAAATTATATTCCTACACCACGCCAATCGCTTCAGTGACAAAAATTCCGAATAGCGTACCGTAATTCCTTTAATAGAAGCTCAAAAGAAGCACCGTCCACTTTGAGCTCAATTATCTCGGTCCCTTCATAATATGTCAAAATAGTTCAACTAATATGATATTTATCATAACATCACCATCATTTTATCCGTTGACAAAGTTTTGATATCTGTTTCAGAAATTGACATAWTTGAGCTCAAATTGCAAATATAGGGTGCGCTTCTATTAGATCAAATACGACAACCATCATTTTCCAGGCAGGTTTTCTCGTTTCCTGTGAAAGATTTTGAGAATTAGTCAACTGATAGAATACGTTTGATGTTACGAGAAACGTTTTTTTAGTTGACTACTTTTTGCTATCTTTCACAGGGACCAAGATAAATTGGCTTACAGTTAGCGACTAAACGAGGCCGGGCTAAAAATTTGAGTTTCTTTCACAAAAATCCTGAAACCGTAACGTTTTTTTTTTCAACTTTCTAAATTCCGATATTTATACCAACCCAATCGACTTATTGACTAAAATTTTCTGAACTCATAATTCGAAATCACAGATGAATATTGAAATTTCTTACTATTAGTTTATTCCTATTAGCTTGATAATGCGAGGATGCTCGATTCGAAGCCCAAAGATCATTCTAGATAACCAAATGACTCATCCATTACATAGCTAACCAACCATTCCTAAAGCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>128 123 120 109 92 89 59 47 41 40 40 26 20 16 13 11 9 9 8</canonical_bands>
                <polymorphic_bands>128 123 120 109 92 89 59 47 41 40 40 26 20 20 16 13 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGACAAAAATTCCGAATAGC</pcr_primer_p1>
		<pcr_primer_p2>GATTTTTGTGAAAGAAACTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>449</pcr_amplicon_size>
		<canonical_amplicon>TGACAAAAATTCCGAATAGCGTACCGTAATTCCTTTAATAGAAGCTCAAAAGAAGCACCGTCCACTTTGAGCTCAATTATCTCGGTCCCTTCATAATATGTCAAAATAGTTCAACTAATATGATATTTATCATAACATCACCATCATTTTATCCGTTGACAAAGTTTTGATATCTGTTTCAGAAATTGACATAATTGAGCTCAAATTGCAAATATAGGGTGCGCTTCTATTAGATCAAATACGACAACCATCATTTTCCAGGCAGGTTTTCTCGTTTCCTGTGAAAGATTTTGAGAATTAGTCAACTGATAGAATACGTTTGATGTTACGAGAAACGTTTTTTTAGTTGACTACTTTTTGCTATCTTTCACAGGGACCAAGATAAATTGGCTTACAGTTAGCGACTAAACGAGGCCGGGCTAAAAATTTGAGTTTCTTTCACAAAAATC</canonical_amplicon>
		<polymorphic_amplicon>TGACAAAAATTCCGAATAGCGTACCGTAATTCCTTTAATAGAAGCTCAAAAGAAGCACCGTCCACTTTGAGCTCAATTATCTCGGTCCCTTCATAATATGTCAAAATAGTTCAACTAATATGATATTTATCATAACATCACCATCATTTTATCCGTTGACAAAGTTTTGATATCTGTTTCAGAAATTGACATAWTTGAGCTCAAATTGCAAATATAGGGTGCGCTTCTATTAGATCAAATACGACAACCATCATTTTCCAGGCAGGTTTTCTCGTTTCCTGTGAAAGATTTTGAGAATTAGTCAACTGATAGAATACGTTTGATGTTACGAGAAACGTTTTTTTAGTTGACTACTTTTTGCTATCTTTCACAGGGACCAAGATAAATTGGCTTACAGTTAGCGACTAAACGAGGCCGGGCTAAAAATTTGAGTTTCTTTCACAAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30031</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>321228</contig_pos>
        <strand>+</strand>
        <context>TAGCATTGGA[G/T]CTCTTCACCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTAAATTCATTTGTATTCTTCTATCTTTTACAGCTCTCTATAGCATTGGA</left_flank>
        <right_flank>CTCTTCACCCATACTTGGTCTTTATCAGTAGAAGTTCAGTTCTGCCTACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATAACTCGAAGCGAAATGATTTGCAATGTATTCGAGGTTTGGCTATTCTCTCGGTTCTTGGTTTCCATTTTTTTTTCCAAATGGATATTTAGGAGTCGATCAGTGAGTTTCAAATTAATTGATTTATTTTTAAATTTTTAAATTTGAGGTTCTTTGTTTTATCGGGTTTTCTAATGTGTATGCTGCTCACAAAATCTCAAGAATTACCGATAATTTCCTTCTTCACCCAATTCTACATTCGTCGTTTAAAACGAATACTTCCCTTGTACTTTCTGTTTATTCTATGTACCGTCATTGCTCTCTACACAGTTTTTTCCGACCGCTGCAATTCTTCAAAAAAAAATGTCTGCTGAAAAAGCTGTAATATTCTTATCAAATAGATCTCCGACTGAAAATGAAAACTATTTCAAAAAAGTGAGTTTTGAATTAATTGTTCTTCTTATTTTTTAAATTCATTTGTATTCTTCTATCTTTTACAGCTCTCTATAGCATTGGAGCTCTTCACCCATACTTGGTCTTTATCAGTAGAAGTTCAGTTCTGCCTACTTGTTCCATTTATCTTTCTCATTGGTCGCCTATTCAAAACACCATTTAGAGAGATATATTTTGTAGCGATAGGTACGTGTGCACAACTTCTGGAGCGTTGTGGGCATGTTCTGGTCGGCGTTTGGTCAGATTCCGAAGACCGCTACTAAACCCGACCAAACTTTGATTAACTCCGGACAAGGTTCCAACGTAGTCGTATTTGATTTCCAATTTCCGACCAAAATCTGAACATGGGTCGCGTACATATATTTTTGGGCAAGTTCCGACCAGAACCTACTCAACATCCGTCCAAAGGCCGAACCCTCTCAACTTCTGACCAGACAAGAAGTTACAATTCGACCGCCGAGTTGGTTTAATGTAAGAGTTCTTATAGTACGTCAATTTGACATAAGCATAAATTGGCCAATGAACCAGATAAAGTGCATATGATATATCTCCGATGTAGATCAAA</canonical>
            <polymorphic>AAAATAACTCGAAGCGAAATGATTTGCAATGTATTCGAGGTTTGGCTATTCTCTCGGTTCTTGGTTTCCATTTTTTTTTCCAAATGGATATTTAGGAGTCGATCAGTGAGTTTCAAATTAATTGATTTATTTTTAAATTTTTAAATTTGAGGTTCTTTGTTTTATCGGGTTTTCTAATGTGTATGCTGCTCACAAAATCTCAAGAATTACCGATAATTTCCTTCTTCACCCAATTCTACATTCGTCGTTTAAAACGAATACTTCCCTTGTACTTTCTGTTTATTCTATGTACCGTCATTGCTCTCTACACAGTTTTTTCCGACCGCTGCAATTCTTCAAAAAAAAATGTCTGCTGAAAAAGCTGTAATATTCTTATCAAATAGATCTCCGACTGAAAATGAAAACTATTTCAAAAAAGTGAGTTTTGAATTAATTGTTCTTCTTATTTTTTAAATTCATTTGTATTCTTCTATCTTTTACAGCTCTCTATAGCATTGGAKCTCTTCACCCATACTTGGTCTTTATCAGTAGAAGTTCAGTTCTGCCTACTTGTTCCATTTATCTTTCTCATTGGTCGCCTATTCAAAACACCATTTAGAGAGATATATTTTGTAGCGATAGGTACGTGTGCACAACTTCTGGAGCGTTGTGGGCATGTTCTGGTCGGCGTTTGGTCAGATTCCGAAGACCGCTACTAAACCCGACCAAACTTTGATTAACTCCGGACAAGGTTCCAACGTAGTCGTATTTGATTTCCAATTTCCGACCAAAATCTGAACATGGGTCGCGTACATATATTTTTGGGCAAGTTCCGACCAGAACCTACTCAACATCCGTCCAAAGGCCGAACCCTCTCAACTTCTGACCAGACAAGAAGTTACAATTCGACCGCCGAGTTGGTTTAATGTAAGAGTTCTTATAGTACGTCAATTTGACATAAGCATAAATTGGCCAATGAACCAGATAAAGTGCATATGATATATCTCCGATGTAGATCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>500 361 121 18</canonical_bands>
                <polymorphic_bands>518 361 121</polymorphic_bands>
            </assay>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 368 130</canonical_bands>
                <polymorphic_bands>632 368</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>502 368 130</canonical_bands>
                <polymorphic_bands>632 368</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>344 316 121 107 49 45 18</canonical_bands>
                <polymorphic_bands>362 316 121 107 49 45</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCTGAAAAAGCTGTAATATTCT</pcr_primer_p1>
		<pcr_primer_p2>CTCTAAATGGTGTTTTGAATAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGCTGAAAAAGCTGTAATATTCTTATCAAATAGATCTCCGACTGAAAATGAAAACTATTTCAAAAAAGTGAGTTTTGAATTAATTGTTCTTCTTATTTTTTAAATTCATTTGTATTCTTCTATCTTTTACAGCTCTCTATAGCATTGGAGCTCTTCACCCATACTTGGTCTTTATCAGTAGAAGTTCAGTTCTGCCTACTTGTTCCATTTATCTTTCTCATTGGTCGCCTATTCAAAACACCATTTAGAG</canonical_amplicon>
		<polymorphic_amplicon>TGCTGAAAAAGCTGTAATATTCTTATCAAATAGATCTCCGACTGAAAATGAAAACTATTTCAAAAAAGTGAGTTTTGAATTAATTGTTCTTCTTATTTTTTAAATTCATTTGTATTCTTCTATCTTTTACAGCTCTCTATAGCATTGGAKCTCTTCACCCATACTTGGTCTTTATCAGTAGAAGTTCAGTTCTGCCTACTTGTTCCATTTATCTTTCTCATTGGTCGCCTATTCAAAACACCATTTAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30032</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>321250</contig_pos>
        <strand>+</strand>
        <context>TACTTGGTCT[C/T]TATCAGTAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTTTTACAGCTCTCTATAGCATTGGAGCTCTTCACCCATACTTGGTCT</left_flank>
        <right_flank>TATCAGTAGAAGTTCAGTTCTGCCTACTTGTTCCATTTATCTTTCTCATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGCAATGTATTCGAGGTTTGGCTATTCTCTCGGTTCTTGGTTTCCATTTTTTTTTCCAAATGGATATTTAGGAGTCGATCAGTGAGTTTCAAATTAATTGATTTATTTTTAAATTTTTAAATTTGAGGTTCTTTGTTTTATCGGGTTTTCTAATGTGTATGCTGCTCACAAAATCTCAAGAATTACCGATAATTTCCTTCTTCACCCAATTCTACATTCGTCGTTTAAAACGAATACTTCCCTTGTACTTTCTGTTTATTCTATGTACCGTCATTGCTCTCTACACAGTTTTTTCCGACCGCTGCAATTCTTCAAAAAAAAATGTCTGCTGAAAAAGCTGTAATATTCTTATCAAATAGATCTCCGACTGAAAATGAAAACTATTTCAAAAAAGTGAGTTTTGAATTAATTGTTCTTCTTATTTTTTAAATTCATTTGTATTCTTCTATCTTTTACAGCTCTCTATAGCATTGGAGCTCTTCACCCATACTTGGTCTTTATCAGTAGAAGTTCAGTTCTGCCTACTTGTTCCATTTATCTTTCTCATTGGTCGCCTATTCAAAACACCATTTAGAGAGATATATTTTGTAGCGATAGGTACGTGTGCACAACTTCTGGAGCGTTGTGGGCATGTTCTGGTCGGCGTTTGGTCAGATTCCGAAGACCGCTACTAAACCCGACCAAACTTTGATTAACTCCGGACAAGGTTCCAACGTAGTCGTATTTGATTTCCAATTTCCGACCAAAATCTGAACATGGGTCGCGTACATATATTTTTGGGCAAGTTCCGACCAGAACCTACTCAACATCCGTCCAAAGGCCGAACCCTCTCAACTTCTGACCAGACAAGAAGTTACAATTCGACCGCCGAGTTGGTTTAATGTAAGAGTTCTTATAGTACGTCAATTTGACATAAGCATAAATTGGCCAATGAACCAGATAAAGTGCATATGATATATCTCCGATGTAGATCAAAAATCGGGAGTTTAGAAGAATAC</canonical>
            <polymorphic>TTTGCAATGTATTCGAGGTTTGGCTATTCTCTCGGTTCTTGGTTTCCATTTTTTTTTCCAAATGGATATTTAGGAGTCGATCAGTGAGTTTCAAATTAATTGATTTATTTTTAAATTTTTAAATTTGAGGTTCTTTGTTTTATCGGGTTTTCTAATGTGTATGCTGCTCACAAAATCTCAAGAATTACCGATAATTTCCTTCTTCACCCAATTCTACATTCGTCGTTTAAAACGAATACTTCCCTTGTACTTTCTGTTTATTCTATGTACCGTCATTGCTCTCTACACAGTTTTTTCCGACCGCTGCAATTCTTCAAAAAAAAATGTCTGCTGAAAAAGCTGTAATATTCTTATCAAATAGATCTCCGACTGAAAATGAAAACTATTTCAAAAAAGTGAGTTTTGAATTAATTGTTCTTCTTATTTTTTAAATTCATTTGTATTCTTCTATCTTTTACAGCTCTCTATAGCATTGGAGCTCTTCACCCATACTTGGTCTYTATCAGTAGAAGTTCAGTTCTGCCTACTTGTTCCATTTATCTTTCTCATTGGTCGCCTATTCAAAACACCATTTAGAGAGATATATTTTGTAGCGATAGGTACGTGTGCACAACTTCTGGAGCGTTGTGGGCATGTTCTGGTCGGCGTTTGGTCAGATTCCGAAGACCGCTACTAAACCCGACCAAACTTTGATTAACTCCGGACAAGGTTCCAACGTAGTCGTATTTGATTTCCAATTTCCGACCAAAATCTGAACATGGGTCGCGTACATATATTTTTGGGCAAGTTCCGACCAGAACCTACTCAACATCCGTCCAAAGGCCGAACCCTCTCAACTTCTGACCAGACAAGAAGTTACAATTCGACCGCCGAGTTGGTTTAATGTAAGAGTTCTTATAGTACGTCAATTTGACATAAGCATAAATTGGCCAATGAACCAGATAAAGTGCATATGATATATCTCCGATGTAGATCAAAAATCGGGAGTTTAGAAGAATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTGAAAAAGCTGTAATATTCT</pcr_primer_p1>
		<pcr_primer_p2>CTCTAAATGGTGTTTTGAATAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGCTGAAAAAGCTGTAATATTCTTATCAAATAGATCTCCGACTGAAAATGAAAACTATTTCAAAAAAGTGAGTTTTGAATTAATTGTTCTTCTTATTTTTTAAATTCATTTGTATTCTTCTATCTTTTACAGCTCTCTATAGCATTGGAGCTCTTCACCCATACTTGGTCTTTATCAGTAGAAGTTCAGTTCTGCCTACTTGTTCCATTTATCTTTCTCATTGGTCGCCTATTCAAAACACCATTTAGAG</canonical_amplicon>
		<polymorphic_amplicon>TGCTGAAAAAGCTGTAATATTCTTATCAAATAGATCTCCGACTGAAAATGAAAACTATTTCAAAAAAGTGAGTTTTGAATTAATTGTTCTTCTTATTTTTTAAATTCATTTGTATTCTTCTATCTTTTACAGCTCTCTATAGCATTGGAGCTCTTCACCCATACTTGGTCTYTATCAGTAGAAGTTCAGTTCTGCCTACTTGTTCCATTTATCTTTCTCATTGGTCGCCTATTCAAAACACCATTTAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30033</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>321345</contig_pos>
        <strand>+</strand>
        <context>ATTTTGTAGC[A/G]ATAGGTACGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCATTGGTCGCCTATTCAAAACACCATTTAGAGAGATATATTTTGTAGC</left_flank>
        <right_flank>ATAGGTACGTGTGCACAACTTCTGGAGCGTTGTGGGCATGTTCTGGTCGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAATTGATTTATTTTTAAATTTTTAAATTTGAGGTTCTTTGTTTTATCGGGTTTTCTAATGTGTATGCTGCTCACAAAATCTCAAGAATTACCGATAATTTCCTTCTTCACCCAATTCTACATTCGTCGTTTAAAACGAATACTTCCCTTGTACTTTCTGTTTATTCTATGTACCGTCATTGCTCTCTACACAGTTTTTTCCGACCGCTGCAATTCTTCAAAAAAAAATGTCTGCTGAAAAAGCTGTAATATTCTTATCAAATAGATCTCCGACTGAAAATGAAAACTATTTCAAAAAAGTGAGTTTTGAATTAATTGTTCTTCTTATTTTTTAAATTCATTTGTATTCTTCTATCTTTTACAGCTCTCTATAGCATTGGAGCTCTTCACCCATACTTGGTCTTTATCAGTAGAAGTTCAGTTCTGCCTACTTGTTCCATTTATCTTTCTCATTGGTCGCCTATTCAAAACACCATTTAGAGAGATATATTTTGTAGCGATAGGTACGTGTGCACAACTTCTGGAGCGTTGTGGGCATGTTCTGGTCGGCGTTTGGTCAGATTCCGAAGACCGCTACTAAACCCGACCAAACTTTGATTAACTCCGGACAAGGTTCCAACGTAGTCGTATTTGATTTCCAATTTCCGACCAAAATCTGAACATGGGTCGCGTACATATATTTTTGGGCAAGTTCCGACCAGAACCTACTCAACATCCGTCCAAAGGCCGAACCCTCTCAACTTCTGACCAGACAAGAAGTTACAATTCGACCGCCGAGTTGGTTTAATGTAAGAGTTCTTATAGTACGTCAATTTGACATAAGCATAAATTGGCCAATGAACCAGATAAAGTGCATATGATATATCTCCGATGTAGATCAAAAATCGGGAGTTTAGAAGAATACTTTCCACATCGAATATAATTAAGCATTCAGTGAAACTGATAATCAATACTCTGGATCAATTTCAATACTTTCTAAACCTTTTTCTAATGACTTAC</canonical>
            <polymorphic>TTAATTGATTTATTTTTAAATTTTTAAATTTGAGGTTCTTTGTTTTATCGGGTTTTCTAATGTGTATGCTGCTCACAAAATCTCAAGAATTACCGATAATTTCCTTCTTCACCCAATTCTACATTCGTCGTTTAAAACGAATACTTCCCTTGTACTTTCTGTTTATTCTATGTACCGTCATTGCTCTCTACACAGTTTTTTCCGACCGCTGCAATTCTTCAAAAAAAAATGTCTGCTGAAAAAGCTGTAATATTCTTATCAAATAGATCTCCGACTGAAAATGAAAACTATTTCAAAAAAGTGAGTTTTGAATTAATTGTTCTTCTTATTTTTTAAATTCATTTGTATTCTTCTATCTTTTACAGCTCTCTATAGCATTGGAGCTCTTCACCCATACTTGGTCTTTATCAGTAGAAGTTCAGTTCTGCCTACTTGTTCCATTTATCTTTCTCATTGGTCGCCTATTCAAAACACCATTTAGAGAGATATATTTTGTAGCRATAGGTACGTGTGCACAACTTCTGGAGCGTTGTGGGCATGTTCTGGTCGGCGTTTGGTCAGATTCCGAAGACCGCTACTAAACCCGACCAAACTTTGATTAACTCCGGACAAGGTTCCAACGTAGTCGTATTTGATTTCCAATTTCCGACCAAAATCTGAACATGGGTCGCGTACATATATTTTTGGGCAAGTTCCGACCAGAACCTACTCAACATCCGTCCAAAGGCCGAACCCTCTCAACTTCTGACCAGACAAGAAGTTACAATTCGACCGCCGAGTTGGTTTAATGTAAGAGTTCTTATAGTACGTCAATTTGACATAAGCATAAATTGGCCAATGAACCAGATAAAGTGCATATGATATATCTCCGATGTAGATCAAAAATCGGGAGTTTAGAAGAATACTTTCCACATCGAATATAATTAAGCATTCAGTGAAACTGATAATCAATACTCTGGATCAATTTCAATACTTTCTAAACCTTTTTCTAATGACTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATTTATCTTTCTCATTGGTC</pcr_primer_p1>
		<pcr_primer_p2>AAGAACTCTTACATTAAACCAACTC</pcr_primer_p2>
		<pcr_amplicon_size>364</pcr_amplicon_size>
		<canonical_amplicon>CCATTTATCTTTCTCATTGGTCGCCTATTCAAAACACCATTTAGAGAGATATATTTTGTAGCGATAGGTACGTGTGCACAACTTCTGGAGCGTTGTGGGCATGTTCTGGTCGGCGTTTGGTCAGATTCCGAAGACCGCTACTAAACCCGACCAAACTTTGATTAACTCCGGACAAGGTTCCAACGTAGTCGTATTTGATTTCCAATTTCCGACCAAAATCTGAACATGGGTCGCGTACATATATTTTTGGGCAAGTTCCGACCAGAACCTACTCAACATCCGTCCAAAGGCCGAACCCTCTCAACTTCTGACCAGACAAGAAGTTACAATTCGACCGCCGAGTTGGTTTAATGTAAGAGTTCTT</canonical_amplicon>
		<polymorphic_amplicon>CCATTTATCTTTCTCATTGGTCGCCTATTCAAAACACCATTTAGAGAGATATATTTTGTAGCRATAGGTACGTGTGCACAACTTCTGGAGCGTTGTGGGCATGTTCTGGTCGGCGTTTGGTCAGATTCCGAAGACCGCTACTAAACCCGACCAAACTTTGATTAACTCCGGACAAGGTTCCAACGTAGTCGTATTTGATTTCCAATTTCCGACCAAAATCTGAACATGGGTCGCGTACATATATTTTTGGGCAAGTTCCGACCAGAACCTACTCAACATCCGTCCAAAGGCCGAACCCTCTCAACTTCTGACCAGACAAGAAGTTACAATTCGACCGCCGAGTTGGTTTAATGTAAGAGTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30034</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>340912</contig_pos>
        <strand>+</strand>
        <context>AGGGTTAATG[G/T]TAAGAGGAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACCTATTCATAAGATTAGGGGGACGAGATTACGGGTACGAGGGTTAATG</left_flank>
        <right_flank>TAAGAGGAGTCCAGCAACGTAAACCGACTGGTGGCTTACATTCCTGATTG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAATTCACTAATTTTGGCCTCTTTGGAAAACTAGTGGCTACCAATTTTATTGCTTTTGTAGCAACCTCAAATTTTCGCAGATGATTTATAGAAAGTTGATCTTGATAAGTGGCAAATTTCAGCCACTCGCTATTATTACTGAAGTTTTTATGGATAGGGAAAGTTGACCTAAAAATACAGATAAGCCGCGTACATTCCAAAGCTTATGTTGTTGGTGATCACAGTACGAGTCCCCTGGTAATTAAAATATCTTCATGTTTAATTTGCACTAAAAGGGCCATTTTCGTGATTTCATAAGTTGCACAAAAAATTTCAGCCCAGTAAAACGCTTCATTCAAATTTTATGATTGCACAAACTTTTGCCACCCTGTATGCTTCCAAATTAACTCTTTCTGAAACTCTGAATTTCTAATTTTCAATTTTTTAACCCAGAATAATAAATGACGAACCTATTCATAAGATTAGGGGGACGAGATTACGGGTACGAGGGTTAATGGTAAGAGGAGTCCAGCAACGTAAACCGACTGGTGGCTTACATTCCTGATTGTCTCTGATTTTCCAGATGTCGTTGTACGAACCGAAACAATTTGAATGGGGACGTCGTCGTCATGCTGAATTGGTAAAAAATGAATGTGGATCAAAATGTGAACTGATTGACTACGTGGATGCATTCTGGAACCAAACAATGAATACGTTTCAGTTTTTTGATTCCAAAGGATTCTTGTATTTCACAACTACTCTTCATGTTTCTGCTCATGGAATTGAACATGTTCGACCTATTTATACAAAGATTTGTGCGGGGTTATAGACTTCTTGAATCGATAAAGAGAATTCGAACTATTGATCTTGGTCATTTCTTTGTTAAATCCCTTCCTTATCCATATGCCCTTTGTGAAGTAAAAATGGACCCAGAGAACAGTTCATGATGATCGTATAATCCATTTGTAGTCATTCGGAGCCCGCTAAAATAGTGATCATCCATCCACGTGAAAATGCA</canonical>
            <polymorphic>TGAAAATTCACTAATTTTGGCCTCTTTGGAAAACTAGTGGCTACCAATTTTATTGCTTTTGTAGCAACCTCAAATTTTCGCAGATGATTTATAGAAAGTTGATCTTGATAAGTGGCAAATTTCAGCCACTCGCTATTATTACTGAAGTTTTTATGGATAGGGAAAGTTGACCTAAAAATACAGATAAGCCGCGTACATTCCAAAGCTTATGTTGTTGGTGATCACAGTACGAGTCCCCTGGTAATTAAAATATCTTCATGTTTAATTTGCACTAAAAGGGCCATTTTCGTGATTTCATAAGTTGCACAAAAAATTTCAGCCCAGTAAAACGCTTCATTCAAATTTTATGATTGCACAAACTTTTGCCACCCTGTATGCTTCCAAATTAACTCTTTCTGAAACTCTGAATTTCTAATTTTCAATTTTTTAACCCAGAATAATAAATGACGAACCTATTCATAAGATTAGGGGGACGAGATTACGGGTACGAGGGTTAATGKTAAGAGGAGTCCAGCAACGTAAACCGACTGGTGGCTTACATTCCTGATTGTCTCTGATTTTCCAGATGTCGTTGTACGAACCGAAACAATTTGAATGGGGACGTCGTCGTCATGCTGAATTGGTAAAAAATGAATGTGGATCAAAATGTGAACTGATTGACTACGTGGATGCATTCTGGAACCAAACAATGAATACGTTTCAGTTTTTTGATTCCAAAGGATTCTTGTATTTCACAACTACTCTTCATGTTTCTGCTCATGGAATTGAACATGTTCGACCTATTTATACAAAGATTTGTGCGGGGTTATAGACTTCTTGAATCGATAAAGAGAATTCGAACTATTGATCTTGGTCATTTCTTTGTTAAATCCCTTCCTTATCCATATGCCCTTTGTGAAGTAAAAATGGACCCAGAGAACAGTTCATGATGATCGTATAATCCATTTGTAGTCATTCGGAGCCCGCTAAAATAGTGATCATCCATCCACGTGAAAATGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAAATTAACTCTTTCTGAAACT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTACCAATTCAGCATGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCAAATTAACTCTTTCTGAAACTCTGAATTTCTAATTTTCAATTTTTTAACCCAGAATAATAAATGACGAACCTATTCATAAGATTAGGGGGACGAGATTACGGGTACGAGGGTTAATGGTAAGAGGAGTCCAGCAACGTAAACCGACTGGTGGCTTACATTCCTGATTGTCTCTGATTTTCCAGATGTCGTTGTACGAACCGAAACAATTTGAATGGGGACGTCGTCGTCATGCTGAATTGGTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCCAAATTAACTCTTTCTGAAACTCTGAATTTCTAATTTTCAATTTTTTAACCCAGAATAATAAATGACGAACCTATTCATAAGATTAGGGGGACGAGATTACGGGTACGAGGGTTAATGKTAAGAGGAGTCCAGCAACGTAAACCGACTGGTGGCTTACATTCCTGATTGTCTCTGATTTTCCAGATGTCGTTGTACGAACCGAAACAATTTGAATGGGGACGTCGTCGTCATGCTGAATTGGTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30035</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>341298</contig_pos>
        <strand>+</strand>
        <context>CCTTATCCAT[A/T]TGCCCTTTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGAACTATTGATCTTGGTCATTTCTTTGTTAAATCCCTTCCTTATCCAT</left_flank>
        <right_flank>TGCCCTTTGTGAAGTAAAAATGGACCCAGAGAACAGTTCATGATGATCGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACTCTTTCTGAAACTCTGAATTTCTAATTTTCAATTTTTTAACCCAGAATAATAAATGACGAACCTATTCATAAGATTAGGGGGACGAGATTACGGGTACGAGGGTTAATGGTAAGAGGAGTCCAGCAACGTAAACCGACTGGTGGCTTACATTCCTGATTGTCTCTGATTTTCCAGATGTCGTTGTACGAACCGAAACAATTTGAATGGGGACGTCGTCGTCATGCTGAATTGGTAAAAAATGAATGTGGATCAAAATGTGAACTGATTGACTACGTGGATGCATTCTGGAACCAAACAATGAATACGTTTCAGTTTTTTGATTCCAAAGGATTCTTGTATTTCACAACTACTCTTCATGTTTCTGCTCATGGAATTGAACATGTTCGACCTATTTATACAAAGATTTGTGCGGGGTTATAGACTTCTTGAATCGATAAAGAGAATTCGAACTATTGATCTTGGTCATTTCTTTGTTAAATCCCTTCCTTATCCATATGCCCTTTGTGAAGTAAAAATGGACCCAGAGAACAGTTCATGATGATCGTATAATCCATTTGTAGTCATTCGGAGCCCGCTAAAATAGTGATCATCCATCCACGTGAAAATGCACAAGATCCTAGATTAAGGAATCACTTAAGTAATATATCTAAACCTACTCTAAATAAATGTATTTATCTTAAGCTTAAGCTAATATTCGATGAGCTCTGAACCTTATCATGAAAGCAACCAAAAAAAAAAGAAATCGACCGATCTTACTCATTAGTCATAAGTACTAAAAGCTACGAACAATACCTTTATTTAGAACAAAAGAATAATAAAAAAGGATTTAAGGAAGGCGGGTGTATAAAAACCAGGGATTGGTGGGTTAGGAGATAATTTATAATTTTTGGGTTTATTTTTTTCTACCTTTGATCTTAGACTTTTGAAAATGAATCACAGTTTTTTTTTGTATCGGGAATTGATTTCTTGATAAAAAATACATTTCTATCAATCTT</canonical>
            <polymorphic>TAACTCTTTCTGAAACTCTGAATTTCTAATTTTCAATTTTTTAACCCAGAATAATAAATGACGAACCTATTCATAAGATTAGGGGGACGAGATTACGGGTACGAGGGTTAATGGTAAGAGGAGTCCAGCAACGTAAACCGACTGGTGGCTTACATTCCTGATTGTCTCTGATTTTCCAGATGTCGTTGTACGAACCGAAACAATTTGAATGGGGACGTCGTCGTCATGCTGAATTGGTAAAAAATGAATGTGGATCAAAATGTGAACTGATTGACTACGTGGATGCATTCTGGAACCAAACAATGAATACGTTTCAGTTTTTTGATTCCAAAGGATTCTTGTATTTCACAACTACTCTTCATGTTTCTGCTCATGGAATTGAACATGTTCGACCTATTTATACAAAGATTTGTGCGGGGTTATAGACTTCTTGAATCGATAAAGAGAATTCGAACTATTGATCTTGGTCATTTCTTTGTTAAATCCCTTCCTTATCCATWTGCCCTTTGTGAAGTAAAAATGGACCCAGAGAACAGTTCATGATGATCGTATAATCCATTTGTAGTCATTCGGAGCCCGCTAAAATAGTGATCATCCATCCACGTGAAAATGCACAAGATCCTAGATTAAGGAATCACTTAAGTAATATATCTAAACCTACTCTAAATAAATGTATTTATCTTAAGCTTAAGCTAATATTCGATGAGCTCTGAACCTTATCATGAAAGCAACCAAAAAAAAAAGAAATCGACCGATCTTACTCATTAGTCATAAGTACTAAAAGCTACGAACAATACCTTTATTTAGAACAAAAGAATAATAAAAAAGGATTTAAGGAAGGCGGGTGTATAAAAACCAGGGATTGGTGGGTTAGGAGATAATTTATAATTTTTGGGTTTATTTTTTTCTACCTTTGATCTTAGACTTTTGAAAATGAATCACAGTTTTTTTTTGTATCGGGAATTGATTTCTTGATAAAAAATACATTTCTATCAATCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATATG</site>
                <isoschizomers>
                    <enzyme>FauNDI</enzyme>
                    <enzyme>NdeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTACTCTTCATGTTTCTGCTCAT</pcr_primer_p1>
		<pcr_primer_p2>TGGATGGATGATCACTATTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTACTCTTCATGTTTCTGCTCATGGAATTGAACATGTTCGACCTATTTATACAAAGATTTGTGCGGGGTTATAGACTTCTTGAATCGATAAAGAGAATTCGAACTATTGATCTTGGTCATTTCTTTGTTAAATCCCTTCCTTATCCATATGCCCTTTGTGAAGTAAAAATGGACCCAGAGAACAGTTCATGATGATCGTATAATCCATTTGTAGTCATTCGGAGCCCGCTAAAATAGTGATCATCCATCCA</canonical_amplicon>
		<polymorphic_amplicon>CTACTCTTCATGTTTCTGCTCATGGAATTGAACATGTTCGACCTATTTATACAAAGATTTGTGCGGGGTTATAGACTTCTTGAATCGATAAAGAGAATTCGAACTATTGATCTTGGTCATTTCTTTGTTAAATCCCTTCCTTATCCATWTGCCCTTTGTGAAGTAAAAATGGACCCAGAGAACAGTTCATGATGATCGTATAATCCATTTGTAGTCATTCGGAGCCCGCTAAAATAGTGATCATCCATCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30036</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>341743</contig_pos>
        <strand>+</strand>
        <context>TGAATCACAG[A/T]TTTTTTTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTTTATTTTTTTCTACCTTTGATCTTAGACTTTTGAAAATGAATCACAG</left_flank>
        <right_flank>TTTTTTTTGTATCGGGAATTGATTTCTTGATAAAAAATACATTTCTATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTCGAACTATTGATCTTGGTCATTTCTTTGTTAAATCCCTTCCTTATCCATATGCCCTTTGTGAAGTAAAAATGGACCCAGAGAACAGTTCATGATGATCGTATAATCCATTTGTAGTCATTCGGAGCCCGCTAAAATAGTGATCATCCATCCACGTGAAAATGCACAAGATCCTAGATTAAGGAATCACTTAAGTAATATATCTAAACCTACTCTAAATAAATGTATTTATCTTAAGCTTAAGCTAATATTCGATGAGCTCTGAACCTTATCATGAAAGCAACCAAAAAAAAAAGAAATCGACCGATCTTACTCATTAGTCATAAGTACTAAAAGCTACGAACAATACCTTTATTTAGAACAAAAGAATAATAAAAAAGGATTTAAGGAAGGCGGGTGTATAAAAACCAGGGATTGGTGGGTTAGGAGATAATTTATAATTTTTGGGTTTATTTTTTTCTACCTTTGATCTTAGACTTTTGAAAATGAATCACAGTTTTTTTTTGTATCGGGAATTGATTTCTTGATAAAAAATACATTTCTATCAATCTTTGAGACTTTCGAAAATTTTTGTAGGTGATCATACTTTATTCATAGACAATCCGATATAAATTCGCTATTTCGTTCATATATAATAGTTACTTTTCTGTTCATCTGAAAATTTGTTCAAAATAAGCTTTCAGAACGATGATCGACTTCGCGATCGTCTTCTCCTCCGCACATGCCATCATCTCGTTCCTCGGAATGACGTTCAATCTTCTTCTAGCCTATCTGGCTCTATTCCAAACTCCTCGGGTCATCAAGTCCTATTCCACACTGATTGTAAACTTTGCTGTCACTGATTTCTTTGCATGCATGTTCGATTTTTTAGTGCAACAAAGACTTATTCCACTGGATTAACACTGGCTTATGTTTCAAATGGTTACTGTAGTCGTTTCGGACCAAGAACGTGTTATGTGGCGTAAGTCTAAAATATGTAATCGCAATACATGACTAG</canonical>
            <polymorphic>GAATTCGAACTATTGATCTTGGTCATTTCTTTGTTAAATCCCTTCCTTATCCATATGCCCTTTGTGAAGTAAAAATGGACCCAGAGAACAGTTCATGATGATCGTATAATCCATTTGTAGTCATTCGGAGCCCGCTAAAATAGTGATCATCCATCCACGTGAAAATGCACAAGATCCTAGATTAAGGAATCACTTAAGTAATATATCTAAACCTACTCTAAATAAATGTATTTATCTTAAGCTTAAGCTAATATTCGATGAGCTCTGAACCTTATCATGAAAGCAACCAAAAAAAAAAGAAATCGACCGATCTTACTCATTAGTCATAAGTACTAAAAGCTACGAACAATACCTTTATTTAGAACAAAAGAATAATAAAAAAGGATTTAAGGAAGGCGGGTGTATAAAAACCAGGGATTGGTGGGTTAGGAGATAATTTATAATTTTTGGGTTTATTTTTTTCTACCTTTGATCTTAGACTTTTGAAAATGAATCACAGWTTTTTTTTGTATCGGGAATTGATTTCTTGATAAAAAATACATTTCTATCAATCTTTGAGACTTTCGAAAATTTTTGTAGGTGATCATACTTTATTCATAGACAATCCGATATAAATTCGCTATTTCGTTCATATATAATAGTTACTTTTCTGTTCATCTGAAAATTTGTTCAAAATAAGCTTTCAGAACGATGATCGACTTCGCGATCGTCTTCTCCTCCGCACATGCCATCATCTCGTTCCTCGGAATGACGTTCAATCTTCTTCTAGCCTATCTGGCTCTATTCCAAACTCCTCGGGTCATCAAGTCCTATTCCACACTGATTGTAAACTTTGCTGTCACTGATTTCTTTGCATGCATGTTCGATTTTTTAGTGCAACAAAGACTTATTCCACTGGATTAACACTGGCTTATGTTTCAAATGGTTACTGTAGTCGTTTCGGACCAAGAACGTGTTATGTGGCGTAAGTCTAAAATATGTAATCGCAATACATGACTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>432 408 90 70</canonical_bands>
                <polymorphic_bands>840 90 70</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTAAAAGCTACGAACAATACCTT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTTTCGAAAGTCTCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACTAAAAGCTACGAACAATACCTTTATTTAGAACAAAAGAATAATAAAAAAGGATTTAAGGAAGGCGGGTGTATAAAAACCAGGGATTGGTGGGTTAGGAGATAATTTATAATTTTTGGGTTTATTTTTTTCTACCTTTGATCTTAGACTTTTGAAAATGAATCACAGTTTTTTTTTGTATCGGGAATTGATTTCTTGATAAAAAATACATTTCTATCAATCTTTGAGACTTTCGAAAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>ACTAAAAGCTACGAACAATACCTTTATTTAGAACAAAAGAATAATAAAAAAGGATTTAAGGAAGGCGGGTGTATAAAAACCAGGGATTGGTGGGTTAGGAGATAATTTATAATTTTTGGGTTTATTTTTTTCTACCTTTGATCTTAGACTTTTGAAAATGAATCACAGWTTTTTTTTGTATCGGGAATTGATTTCTTGATAAAAAATACATTTCTATCAATCTTTGAGACTTTCGAAAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30037</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>341778</contig_pos>
        <strand></strand>
        <context>TCTTGATAAA[A/T]AATACATTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAATGAATCACAGTTTTTTTTTGTATCGGGAATTGATTTCTTGATAAA</left_flank>
        <right_flank>AATACATTTCTATCAATCTTTGAGACTTTCGAAAATTTTTGTAGGTGATC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCCCTTCCTTATCCATATGCCCTTTGTGAAGTAAAAATGGACCCAGAGAACAGTTCATGATGATCGTATAATCCATTTGTAGTCATTCGGAGCCCGCTAAAATAGTGATCATCCATCCACGTGAAAATGCACAAGATCCTAGATTAAGGAATCACTTAAGTAATATATCTAAACCTACTCTAAATAAATGTATTTATCTTAAGCTTAAGCTAATATTCGATGAGCTCTGAACCTTATCATGAAAGCAACCAAAAAAAAAAGAAATCGACCGATCTTACTCATTAGTCATAAGTACTAAAAGCTACGAACAATACCTTTATTTAGAACAAAAGAATAATAAAAAAGGATTTAAGGAAGGCGGGTGTATAAAAACCAGGGATTGGTGGGTTAGGAGATAATTTATAATTTTTGGGTTTATTTTTTTCTACCTTTGATCTTAGACTTTTGAAAATGAATCACAGTTTTTTTTTGTATCGGGAATTGATTTCTTGATAAAAAATACATTTCTATCAATCTTTGAGACTTTCGAAAATTTTTGTAGGTGATCATACTTTATTCATAGACAATCCGATATAAATTCGCTATTTCGTTCATATATAATAGTTACTTTTCTGTTCATCTGAAAATTTGTTCAAAATAAGCTTTCAGAACGATGATCGACTTCGCGATCGTCTTCTCCTCCGCACATGCCATCATCTCGTTCCTCGGAATGACGTTCAATCTTCTTCTAGCCTATCTGGCTCTATTCCAAACTCCTCGGGTCATCAAGTCCTATTCCACACTGATTGTAAACTTTGCTGTCACTGATTTCTTTGCATGCATGTTCGATTTTTTAGTGCAACAAAGACTTATTCCACTGGATTAACACTGGCTTATGTTTCAAATGGTTACTGTAGTCGTTTCGGACCAAGAACGTGTTATGTGGCGTAAGTCTAAAATATGTAATCGCAATACATGACTAGAATTCACTAGCAGAAAAACAGGATCATAGACTTAC</canonical>
            <polymorphic>AAATCCCTTCCTTATCCATATGCCCTTTGTGAAGTAAAAATGGACCCAGAGAACAGTTCATGATGATCGTATAATCCATTTGTAGTCATTCGGAGCCCGCTAAAATAGTGATCATCCATCCACGTGAAAATGCACAAGATCCTAGATTAAGGAATCACTTAAGTAATATATCTAAACCTACTCTAAATAAATGTATTTATCTTAAGCTTAAGCTAATATTCGATGAGCTCTGAACCTTATCATGAAAGCAACCAAAAAAAAAAGAAATCGACCGATCTTACTCATTAGTCATAAGTACTAAAAGCTACGAACAATACCTTTATTTAGAACAAAAGAATAATAAAAAAGGATTTAAGGAAGGCGGGTGTATAAAAACCAGGGATTGGTGGGTTAGGAGATAATTTATAATTTTTGGGTTTATTTTTTTCTACCTTTGATCTTAGACTTTTGAAAATGAATCACAGTTTTTTTTTGTATCGGGAATTGATTTCTTGATAAAWAATACATTTCTATCAATCTTTGAGACTTTCGAAAATTTTTGTAGGTGATCATACTTTATTCATAGACAATCCGATATAAATTCGCTATTTCGTTCATATATAATAGTTACTTTTCTGTTCATCTGAAAATTTGTTCAAAATAAGCTTTCAGAACGATGATCGACTTCGCGATCGTCTTCTCCTCCGCACATGCCATCATCTCGTTCCTCGGAATGACGTTCAATCTTCTTCTAGCCTATCTGGCTCTATTCCAAACTCCTCGGGTCATCAAGTCCTATTCCACACTGATTGTAAACTTTGCTGTCACTGATTTCTTTGCATGCATGTTCGATTTTTTAGTGCAACAAAGACTTATTCCACTGGATTAACACTGGCTTATGTTTCAAATGGTTACTGTAGTCGTTTCGGACCAAGAACGTGTTATGTGGCGTAAGTCTAAAATATGTAATCGCAATACATGACTAGAATTCACTAGCAGAAAAACAGGATCATAGACTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTGGTGGGTTAGGAGATAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTCAGATGAACAGAAAAGTAACTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATTGGTGGGTTAGGAGATAATTTATAATTTTTGGGTTTATTTTTTTCTACCTTTGATCTTAGACTTTTGAAAATGAATCACAGTTTTTTTTTGTATCGGGAATTGATTTCTTGATAAAAAATACATTTCTATCAATCTTTGAGACTTTCGAAAATTTTTGTAGGTGATCATACTTTATTCATAGACAATCCGATATAAATTCGCTATTTCGTTCATATATAATAGTTACTTTTCTGTTCATCTGAAA</canonical_amplicon>
		<polymorphic_amplicon>GATTGGTGGGTTAGGAGATAATTTATAATTTTTGGGTTTATTTTTTTCTACCTTTGATCTTAGACTTTTGAAAATGAATCACAGTTTTTTTTTGTATCGGGAATTGATTTCTTGATAAAWAATACATTTCTATCAATCTTTGAGACTTTCGAAAATTTTTGTAGGTGATCATACTTTATTCATAGACAATCCGATATAAATTCGCTATTTCGTTCATATATAATAGTTACTTTTCTGTTCATCTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30038</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>417862</contig_pos>
        <strand>+</strand>
        <context>ATTATGGGTC[C/T]CTCTAATAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTAAAGTACCGTAAAACCTGTATTAGAGCTACCCATTAAATTATGGGTC</left_flank>
        <right_flank>CTCTAATAAACGGGCCATTTTGAGAGGGTTTGAAGAAATACAAAGGCCCC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTGGTCAGTCGACAGTTTTGAAATATACTCCTCAGTGAATATAAGTCAGGCTCTCCCGATATTGCCTAGATCACTTGTTGAAATTCATACTTGAAACTTGAAACTGGAAAATTTTTCCTCAATTAATTTTTCAACTGAAAGGAACAAACTTTTTACCTATCACAAGTGTGTAGACTCACATAAAAAATTAAAGGAAATCGCAAAATTCCTTTTCAACAGTTTTTCGAGTTTCCGCTTTTTTATATGTGAATTCACATATTGTACTCACATTTTAGTTTTTTTTTTAATCGGAGTCTTCTAAATATTGAAGGCGTGTGTTTTGAACCCAGTATTATTAGAGAGAGAAGATTCAAATACCGGTCAGTTGAAACATGATTTTTTGACTTTTTTTGATGTAACGGAAGATTTATTAACGAATAATTTGCATTCTGTAACTGCAATACTTAATTAAAGTACCGTAAAACCTGTATTAGAGCTACCCATTAAATTATGGGTCCCTCTAATAAACGGGCCATTTTGAGAGGGTTTGAAGAAATACAAAGGCCCCTTCAAAATGTGTGTGTTCTTTTTTCAAAACATAAACTTCCATATGCAGTCTAAAATATTCTGGACATATCAAACTTTTACAGAAAATCGTTGAAGAACATTTGAAGTCTAAAAAATTTACCAATTTTTTATCATTGACAGATCTTTATGAATTTTCGAAAACTCAATAAAATTTTCGATGAAAAAGTTCGGAAAATGGCCAAAGAACTAAAACGGCTCACTCTAATTGGAGGGCTGCTGTGATAGAAGGGCTCTCCGAAAGTTCCTTAGTTTGAATAATAGAAACGTCGGCTCTTCTAAAACAGGTTTTATGGTATTTGACTGGTGTTTGAAATAAACGTTTTTGTTTTTTTACTTTGTAGTAAACTTAACCTCTATTTTTGCCAGCGGAACTCGAAATATCAAAAAAAAACACTTGATTAGCCTTATGGTCATTATTGATATTTAGTTA</canonical>
            <polymorphic>AATTTGGTCAGTCGACAGTTTTGAAATATACTCCTCAGTGAATATAAGTCAGGCTCTCCCGATATTGCCTAGATCACTTGTTGAAATTCATACTTGAAACTTGAAACTGGAAAATTTTTCCTCAATTAATTTTTCAACTGAAAGGAACAAACTTTTTACCTATCACAAGTGTGTAGACTCACATAAAAAATTAAAGGAAATCGCAAAATTCCTTTTCAACAGTTTTTCGAGTTTCCGCTTTTTTATATGTGAATTCACATATTGTACTCACATTTTAGTTTTTTTTTTAATCGGAGTCTTCTAAATATTGAAGGCGTGTGTTTTGAACCCAGTATTATTAGAGAGAGAAGATTCAAATACCGGTCAGTTGAAACATGATTTTTTGACTTTTTTTGATGTAACGGAAGATTTATTAACGAATAATTTGCATTCTGTAACTGCAATACTTAATTAAAGTACCGTAAAACCTGTATTAGAGCTACCCATTAAATTATGGGTCYCTCTAATAAACGGGCCATTTTGAGAGGGTTTGAAGAAATACAAAGGCCCCTTCAAAATGTGTGTGTTCTTTTTTCAAAACATAAACTTCCATATGCAGTCTAAAATATTCTGGACATATCAAACTTTTACAGAAAATCGTTGAAGAACATTTGAAGTCTAAAAAATTTACCAATTTTTTATCATTGACAGATCTTTATGAATTTTCGAAAACTCAATAAAATTTTCGATGAAAAAGTTCGGAAAATGGCCAAAGAACTAAAACGGCTCACTCTAATTGGAGGGCTGCTGTGATAGAAGGGCTCTCCGAAAGTTCCTTAGTTTGAATAATAGAAACGTCGGCTCTTCTAAAACAGGTTTTATGGTATTTGACTGGTGTTTGAAATAAACGTTTTTGTTTTTTTACTTTGTAGTAAACTTAACCTCTATTTTTGCCAGCGGAACTCGAAATATCAAAAAAAAACACTTGATTAGCCTTATGGTCATTATTGATATTTAGTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>496 455 33 16</canonical_bands>
                <polymorphic_bands>512 455 33</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>497 453 50</canonical_bands>
                <polymorphic_bands>547 453</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>496 455 49</canonical_bands>
                <polymorphic_bands>545 455</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGGWCCC</site>
                <isoschizomers>
                    <enzyme>SanDI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTAACGGAAGATTTATTAACG</pcr_primer_p1>
		<pcr_primer_p2>CTTCAACGATTTTCTGTAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGTAACGGAAGATTTATTAACGAATAATTTGCATTCTGTAACTGCAATACTTAATTAAAGTACCGTAAAACCTGTATTAGAGCTACCCATTAAATTATGGGTCCCTCTAATAAACGGGCCATTTTGAGAGGGTTTGAAGAAATACAAAGGCCCCTTCAAAATGTGTGTGTTCTTTTTTCAAAACATAAACTTCCATATGCAGTCTAAAATATTCTGGACATATCAAACTTTTACAGAAAATCGTTGAAG</canonical_amplicon>
		<polymorphic_amplicon>ATGTAACGGAAGATTTATTAACGAATAATTTGCATTCTGTAACTGCAATACTTAATTAAAGTACCGTAAAACCTGTATTAGAGCTACCCATTAAATTATGGGTCYCTCTAATAAACGGGCCATTTTGAGAGGGTTTGAAGAAATACAAAGGCCCCTTCAAAATGTGTGTGTTCTTTTTTCAAAACATAAACTTCCATATGCAGTCTAAAATATTCTGGACATATCAAACTTTTACAGAAAATCGTTGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30039</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>417906</contig_pos>
        <strand>+</strand>
        <context>AGAAATACAA[A/G]GGCCCCTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGGTCCCTCTAATAAACGGGCCATTTTGAGAGGGTTTGAAGAAATACAA</left_flank>
        <right_flank>GGCCCCTTCAAAATGTGTGTGTTCTTTTTTCAAAACATAAACTTCCATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAGTCAGGCTCTCCCGATATTGCCTAGATCACTTGTTGAAATTCATACTTGAAACTTGAAACTGGAAAATTTTTCCTCAATTAATTTTTCAACTGAAAGGAACAAACTTTTTACCTATCACAAGTGTGTAGACTCACATAAAAAATTAAAGGAAATCGCAAAATTCCTTTTCAACAGTTTTTCGAGTTTCCGCTTTTTTATATGTGAATTCACATATTGTACTCACATTTTAGTTTTTTTTTTAATCGGAGTCTTCTAAATATTGAAGGCGTGTGTTTTGAACCCAGTATTATTAGAGAGAGAAGATTCAAATACCGGTCAGTTGAAACATGATTTTTTGACTTTTTTTGATGTAACGGAAGATTTATTAACGAATAATTTGCATTCTGTAACTGCAATACTTAATTAAAGTACCGTAAAACCTGTATTAGAGCTACCCATTAAATTATGGGTCCCTCTAATAAACGGGCCATTTTGAGAGGGTTTGAAGAAATACAAAGGCCCCTTCAAAATGTGTGTGTTCTTTTTTCAAAACATAAACTTCCATATGCAGTCTAAAATATTCTGGACATATCAAACTTTTACAGAAAATCGTTGAAGAACATTTGAAGTCTAAAAAATTTACCAATTTTTTATCATTGACAGATCTTTATGAATTTTCGAAAACTCAATAAAATTTTCGATGAAAAAGTTCGGAAAATGGCCAAAGAACTAAAACGGCTCACTCTAATTGGAGGGCTGCTGTGATAGAAGGGCTCTCCGAAAGTTCCTTAGTTTGAATAATAGAAACGTCGGCTCTTCTAAAACAGGTTTTATGGTATTTGACTGGTGTTTGAAATAAACGTTTTTGTTTTTTTACTTTGTAGTAAACTTAACCTCTATTTTTGCCAGCGGAACTCGAAATATCAAAAAAAAACACTTGATTAGCCTTATGGTCATTATTGATATTTAGTTACTGGACCAAATTTATTTTTACCTTTTACAGAATTACTCAGTTGC</canonical>
            <polymorphic>TAAGTCAGGCTCTCCCGATATTGCCTAGATCACTTGTTGAAATTCATACTTGAAACTTGAAACTGGAAAATTTTTCCTCAATTAATTTTTCAACTGAAAGGAACAAACTTTTTACCTATCACAAGTGTGTAGACTCACATAAAAAATTAAAGGAAATCGCAAAATTCCTTTTCAACAGTTTTTCGAGTTTCCGCTTTTTTATATGTGAATTCACATATTGTACTCACATTTTAGTTTTTTTTTTAATCGGAGTCTTCTAAATATTGAAGGCGTGTGTTTTGAACCCAGTATTATTAGAGAGAGAAGATTCAAATACCGGTCAGTTGAAACATGATTTTTTGACTTTTTTTGATGTAACGGAAGATTTATTAACGAATAATTTGCATTCTGTAACTGCAATACTTAATTAAAGTACCGTAAAACCTGTATTAGAGCTACCCATTAAATTATGGGTCCCTCTAATAAACGGGCCATTTTGAGAGGGTTTGAAGAAATACAARGGCCCCTTCAAAATGTGTGTGTTCTTTTTTCAAAACATAAACTTCCATATGCAGTCTAAAATATTCTGGACATATCAAACTTTTACAGAAAATCGTTGAAGAACATTTGAAGTCTAAAAAATTTACCAATTTTTTATCATTGACAGATCTTTATGAATTTTCGAAAACTCAATAAAATTTTCGATGAAAAAGTTCGGAAAATGGCCAAAGAACTAAAACGGCTCACTCTAATTGGAGGGCTGCTGTGATAGAAGGGCTCTCCGAAAGTTCCTTAGTTTGAATAATAGAAACGTCGGCTCTTCTAAAACAGGTTTTATGGTATTTGACTGGTGTTTGAAATAAACGTTTTTGTTTTTTTACTTTGTAGTAAACTTAACCTCTATTTTTGCCAGCGGAACTCGAAATATCAAAAAAAAACACTTGATTAGCCTTATGGTCATTATTGATATTTAGTTACTGGACCAAATTTATTTTTACCTTTTACAGAATTACTCAGTTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>499 452 49</canonical_bands>
                <polymorphic_bands>548 452</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTAACGGAAGATTTATTAACG</pcr_primer_p1>
		<pcr_primer_p2>CTTCAACGATTTTCTGTAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGTAACGGAAGATTTATTAACGAATAATTTGCATTCTGTAACTGCAATACTTAATTAAAGTACCGTAAAACCTGTATTAGAGCTACCCATTAAATTATGGGTCCCTCTAATAAACGGGCCATTTTGAGAGGGTTTGAAGAAATACAAAGGCCCCTTCAAAATGTGTGTGTTCTTTTTTCAAAACATAAACTTCCATATGCAGTCTAAAATATTCTGGACATATCAAACTTTTACAGAAAATCGTTGAAG</canonical_amplicon>
		<polymorphic_amplicon>ATGTAACGGAAGATTTATTAACGAATAATTTGCATTCTGTAACTGCAATACTTAATTAAAGTACCGTAAAACCTGTATTAGAGCTACCCATTAAATTATGGGTCCCTCTAATAAACGGGCCATTTTGAGAGGGTTTGAAGAAATACAARGGCCCCTTCAAAATGTGTGTGTTCTTTTTTCAAAACATAAACTTCCATATGCAGTCTAAAATATTCTGGACATATCAAACTTTTACAGAAAATCGTTGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30040</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>418041</contig_pos>
        <strand>+</strand>
        <context>ACCAATTTTT[G/T]ATCATTGACA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACAGAAAATCGTTGAAGAACATTTGAAGTCTAAAAAATTTACCAATTTTT</left_flank>
        <right_flank>ATCATTGACAGATCTTTATGAATTTTCGAAAACTCAATAAAATTTTCGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACATAAAAAATTAAAGGAAATCGCAAAATTCCTTTTCAACAGTTTTTCGAGTTTCCGCTTTTTTATATGTGAATTCACATATTGTACTCACATTTTAGTTTTTTTTTTAATCGGAGTCTTCTAAATATTGAAGGCGTGTGTTTTGAACCCAGTATTATTAGAGAGAGAAGATTCAAATACCGGTCAGTTGAAACATGATTTTTTGACTTTTTTTGATGTAACGGAAGATTTATTAACGAATAATTTGCATTCTGTAACTGCAATACTTAATTAAAGTACCGTAAAACCTGTATTAGAGCTACCCATTAAATTATGGGTCCCTCTAATAAACGGGCCATTTTGAGAGGGTTTGAAGAAATACAAAGGCCCCTTCAAAATGTGTGTGTTCTTTTTTCAAAACATAAACTTCCATATGCAGTCTAAAATATTCTGGACATATCAAACTTTTACAGAAAATCGTTGAAGAACATTTGAAGTCTAAAAAATTTACCAATTTTTTATCATTGACAGATCTTTATGAATTTTCGAAAACTCAATAAAATTTTCGATGAAAAAGTTCGGAAAATGGCCAAAGAACTAAAACGGCTCACTCTAATTGGAGGGCTGCTGTGATAGAAGGGCTCTCCGAAAGTTCCTTAGTTTGAATAATAGAAACGTCGGCTCTTCTAAAACAGGTTTTATGGTATTTGACTGGTGTTTGAAATAAACGTTTTTGTTTTTTTACTTTGTAGTAAACTTAACCTCTATTTTTGCCAGCGGAACTCGAAATATCAAAAAAAAACACTTGATTAGCCTTATGGTCATTATTGATATTTAGTTACTGGACCAAATTTATTTTTACCTTTTACAGAATTACTCAGTTGCAAAAATAAGTTTCCCTCTCTTCCCATTCCCTCCAAACCGTTTATTCCGCGAAAAAACCCTCAACCTACATGTCAAAACTACCATCCATCTTTCCATCTTTCTCTCTTTCTTCCACCACTTTTCTACCTCCAAACT</canonical>
            <polymorphic>CACATAAAAAATTAAAGGAAATCGCAAAATTCCTTTTCAACAGTTTTTCGAGTTTCCGCTTTTTTATATGTGAATTCACATATTGTACTCACATTTTAGTTTTTTTTTTAATCGGAGTCTTCTAAATATTGAAGGCGTGTGTTTTGAACCCAGTATTATTAGAGAGAGAAGATTCAAATACCGGTCAGTTGAAACATGATTTTTTGACTTTTTTTGATGTAACGGAAGATTTATTAACGAATAATTTGCATTCTGTAACTGCAATACTTAATTAAAGTACCGTAAAACCTGTATTAGAGCTACCCATTAAATTATGGGTCCCTCTAATAAACGGGCCATTTTGAGAGGGTTTGAAGAAATACAAAGGCCCCTTCAAAATGTGTGTGTTCTTTTTTCAAAACATAAACTTCCATATGCAGTCTAAAATATTCTGGACATATCAAACTTTTACAGAAAATCGTTGAAGAACATTTGAAGTCTAAAAAATTTACCAATTTTTKATCATTGACAGATCTTTATGAATTTTCGAAAACTCAATAAAATTTTCGATGAAAAAGTTCGGAAAATGGCCAAAGAACTAAAACGGCTCACTCTAATTGGAGGGCTGCTGTGATAGAAGGGCTCTCCGAAAGTTCCTTAGTTTGAATAATAGAAACGTCGGCTCTTCTAAAACAGGTTTTATGGTATTTGACTGGTGTTTGAAATAAACGTTTTTGTTTTTTTACTTTGTAGTAAACTTAACCTCTATTTTTGCCAGCGGAACTCGAAATATCAAAAAAAAACACTTGATTAGCCTTATGGTCATTATTGATATTTAGTTACTGGACCAAATTTATTTTTACCTTTTACAGAATTACTCAGTTGCAAAAATAAGTTTCCCTCTCTTCCCATTCCCTCCAAACCGTTTATTCCGCGAAAAAACCCTCAACCTACATGTCAAAACTACCATCCATCTTTCCATCTTTCTCTCTTTCTTCCACCACTTTTCTACCTCCAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTACAGAAAATCGTTGAAGA</pcr_primer_p1>
		<pcr_primer_p2>CAGTCAAATACCATAAAACCTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTTACAGAAAATCGTTGAAGAACATTTGAAGTCTAAAAAATTTACCAATTTTTTATCATTGACAGATCTTTATGAATTTTCGAAAACTCAATAAAATTTTCGATGAAAAAGTTCGGAAAATGGCCAAAGAACTAAAACGGCTCACTCTAATTGGAGGGCTGCTGTGATAGAAGGGCTCTCCGAAAGTTCCTTAGTTTGAATAATAGAAACGTCGGCTCTTCTAAAACAGGTTTTATGGTATTTGACTG</canonical_amplicon>
		<polymorphic_amplicon>CTTTTACAGAAAATCGTTGAAGAACATTTGAAGTCTAAAAAATTTACCAATTTTTKATCATTGACAGATCTTTATGAATTTTCGAAAACTCAATAAAATTTTCGATGAAAAAGTTCGGAAAATGGCCAAAGAACTAAAACGGCTCACTCTAATTGGAGGGCTGCTGTGATAGAAGGGCTCTCCGAAAGTTCCTTAGTTTGAATAATAGAAACGTCGGCTCTTCTAAAACAGGTTTTATGGTATTTGACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30041</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>418079</contig_pos>
        <strand>+</strand>
        <context>GAAAACTCAA[C/T]AAARTTTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTACCAATTTTTTATCATTGACAGATCTTTATGAATTTTCGAAAACTCAA</left_flank>
        <right_flank>AAAATTTTCGATGAAAAAGTTCGGAAAATGGCCAAAGAACTAAAACGGCT</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAGTTTTTCGAGTTTCCGCTTTTTTATATGTGAATTCACATATTGTACTCACATTTTAGTTTTTTTTTTAATCGGAGTCTTCTAAATATTGAAGGCGTGTGTTTTGAACCCAGTATTATTAGAGAGAGAAGATTCAAATACCGGTCAGTTGAAACATGATTTTTTGACTTTTTTTGATGTAACGGAAGATTTATTAACGAATAATTTGCATTCTGTAACTGCAATACTTAATTAAAGTACCGTAAAACCTGTATTAGAGCTACCCATTAAATTATGGGTCCCTCTAATAAACGGGCCATTTTGAGAGGGTTTGAAGAAATACAAAGGCCCCTTCAAAATGTGTGTGTTCTTTTTTCAAAACATAAACTTCCATATGCAGTCTAAAATATTCTGGACATATCAAACTTTTACAGAAAATCGTTGAAGAACATTTGAAGTCTAAAAAATTTACCAATTTTTTATCATTGACAGATCTTTATGAATTTTCGAAAACTCAATAAAATTTTCGATGAAAAAGTTCGGAAAATGGCCAAAGAACTAAAACGGCTCACTCTAATTGGAGGGCTGCTGTGATAGAAGGGCTCTCCGAAAGTTCCTTAGTTTGAATAATAGAAACGTCGGCTCTTCTAAAACAGGTTTTATGGTATTTGACTGGTGTTTGAAATAAACGTTTTTGTTTTTTTACTTTGTAGTAAACTTAACCTCTATTTTTGCCAGCGGAACTCGAAATATCAAAAAAAAACACTTGATTAGCCTTATGGTCATTATTGATATTTAGTTACTGGACCAAATTTATTTTTACCTTTTACAGAATTACTCAGTTGCAAAAATAAGTTTCCCTCTCTTCCCATTCCCTCCAAACCGTTTATTCCGCGAAAAAACCCTCAACCTACATGTCAAAACTACCATCCATCTTTCCATCTTTCTCTCTTTCTTCCACCACTTTTCTACCTCCAAACTGTCCTCAATTTTTATGTATTTCATCGTTTTTCGCCCCC</canonical>
            <polymorphic>AACAGTTTTTCGAGTTTCCGCTTTTTTATATGTGAATTCACATATTGTACTCACATTTTAGTTTTTTTTTTAATCGGAGTCTTCTAAATATTGAAGGCGTGTGTTTTGAACCCAGTATTATTAGAGAGAGAAGATTCAAATACCGGTCAGTTGAAACATGATTTTTTGACTTTTTTTGATGTAACGGAAGATTTATTAACGAATAATTTGCATTCTGTAACTGCAATACTTAATTAAAGTACCGTAAAACCTGTATTAGAGCTACCCATTAAATTATGGGTCCCTCTAATAAACGGGCCATTTTGAGAGGGTTTGAAGAAATACAAAGGCCCCTTCAAAATGTGTGTGTTCTTTTTTCAAAACATAAACTTCCATATGCAGTCTAAAATATTCTGGACATATCAAACTTTTACAGAAAATCGTTGAAGAACATTTGAAGTCTAAAAAATTTACCAATTTTTTATCATTGACAGATCTTTATGAATTTTCGAAAACTCAAYAAAATTTTCGATGAAAAAGTTCGGAAAATGGCCAAAGAACTAAAACGGCTCACTCTAATTGGAGGGCTGCTGTGATAGAAGGGCTCTCCGAAAGTTCCTTAGTTTGAATAATAGAAACGTCGGCTCTTCTAAAACAGGTTTTATGGTATTTGACTGGTGTTTGAAATAAACGTTTTTGTTTTTTTACTTTGTAGTAAACTTAACCTCTATTTTTGCCAGCGGAACTCGAAATATCAAAAAAAAACACTTGATTAGCCTTATGGTCATTATTGATATTTAGTTACTGGACCAAATTTATTTTTACCTTTTACAGAATTACTCAGTTGCAAAAATAAGTTTCCCTCTCTTCCCATTCCCTCCAAACCGTTTATTCCGCGAAAAAACCCTCAACCTACATGTCAAAACTACCATCCATCTTTCCATCTTTCTCTCTTTCTTCCACCACTTTTCTACCTCCAAACTGTCCTCAATTTTTATGTATTTCATCGTTTTTCGCCCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTACAGAAAATCGTTGAAGA</pcr_primer_p1>
		<pcr_primer_p2>CAGTCAAATACCATAAAACCTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTTACAGAAAATCGTTGAAGAACATTTGAAGTCTAAAAAATTTACCAATTTTTTATCATTGACAGATCTTTATGAATTTTCGAAAACTCAATAAAATTTTCGATGAAAAAGTTCGGAAAATGGCCAAAGAACTAAAACGGCTCACTCTAATTGGAGGGCTGCTGTGATAGAAGGGCTCTCCGAAAGTTCCTTAGTTTGAATAATAGAAACGTCGGCTCTTCTAAAACAGGTTTTATGGTATTTGACTG</canonical_amplicon>
		<polymorphic_amplicon>CTTTTACAGAAAATCGTTGAAGAACATTTGAAGTCTAAAAAATTTACCAATTTTTTATCATTGACAGATCTTTATGAATTTTCGAAAACTCAAYAAAATTTTCGATGAAAAAGTTCGGAAAATGGCCAAAGAACTAAAACGGCTCACTCTAATTGGAGGGCTGCTGTGATAGAAGGGCTCTCCGAAAGTTCCTTAGTTTGAATAATAGAAACGTCGGCTCTTCTAAAACAGGTTTTATGGTATTTGACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30042</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>418083</contig_pos>
        <strand>+</strand>
        <context>ACTCAAYAAA[A/G]TTTTCGATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATTTTTTATCATTGACAGATCTTTATGAATTTTCGAAAACTCAATAAA</left_flank>
        <right_flank>TTTTCGATGAAAAAGTTCGGAAAATGGCCAAAGAACTAAAACGGCTCACT</right_flank>
        <qual_score>134</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTTCGAGTTTCCGCTTTTTTATATGTGAATTCACATATTGTACTCACATTTTAGTTTTTTTTTTAATCGGAGTCTTCTAAATATTGAAGGCGTGTGTTTTGAACCCAGTATTATTAGAGAGAGAAGATTCAAATACCGGTCAGTTGAAACATGATTTTTTGACTTTTTTTGATGTAACGGAAGATTTATTAACGAATAATTTGCATTCTGTAACTGCAATACTTAATTAAAGTACCGTAAAACCTGTATTAGAGCTACCCATTAAATTATGGGTCCCTCTAATAAACGGGCCATTTTGAGAGGGTTTGAAGAAATACAAAGGCCCCTTCAAAATGTGTGTGTTCTTTTTTCAAAACATAAACTTCCATATGCAGTCTAAAATATTCTGGACATATCAAACTTTTACAGAAAATCGTTGAAGAACATTTGAAGTCTAAAAAATTTACCAATTTTTTATCATTGACAGATCTTTATGAATTTTCGAAAACTCAATAAAATTTTCGATGAAAAAGTTCGGAAAATGGCCAAAGAACTAAAACGGCTCACTCTAATTGGAGGGCTGCTGTGATAGAAGGGCTCTCCGAAAGTTCCTTAGTTTGAATAATAGAAACGTCGGCTCTTCTAAAACAGGTTTTATGGTATTTGACTGGTGTTTGAAATAAACGTTTTTGTTTTTTTACTTTGTAGTAAACTTAACCTCTATTTTTGCCAGCGGAACTCGAAATATCAAAAAAAAACACTTGATTAGCCTTATGGTCATTATTGATATTTAGTTACTGGACCAAATTTATTTTTACCTTTTACAGAATTACTCAGTTGCAAAAATAAGTTTCCCTCTCTTCCCATTCCCTCCAAACCGTTTATTCCGCGAAAAAACCCTCAACCTACATGTCAAAACTACCATCCATCTTTCCATCTTTCTCTCTTTCTTCCACCACTTTTCTACCTCCAAACTGTCCTCAATTTTTATGTATTTCATCGTTTTTCGCCCCCCCCC</canonical>
            <polymorphic>GTTTTTCGAGTTTCCGCTTTTTTATATGTGAATTCACATATTGTACTCACATTTTAGTTTTTTTTTTAATCGGAGTCTTCTAAATATTGAAGGCGTGTGTTTTGAACCCAGTATTATTAGAGAGAGAAGATTCAAATACCGGTCAGTTGAAACATGATTTTTTGACTTTTTTTGATGTAACGGAAGATTTATTAACGAATAATTTGCATTCTGTAACTGCAATACTTAATTAAAGTACCGTAAAACCTGTATTAGAGCTACCCATTAAATTATGGGTCCCTCTAATAAACGGGCCATTTTGAGAGGGTTTGAAGAAATACAAAGGCCCCTTCAAAATGTGTGTGTTCTTTTTTCAAAACATAAACTTCCATATGCAGTCTAAAATATTCTGGACATATCAAACTTTTACAGAAAATCGTTGAAGAACATTTGAAGTCTAAAAAATTTACCAATTTTTTATCATTGACAGATCTTTATGAATTTTCGAAAACTCAATAAARTTTTCGATGAAAAAGTTCGGAAAATGGCCAAAGAACTAAAACGGCTCACTCTAATTGGAGGGCTGCTGTGATAGAAGGGCTCTCCGAAAGTTCCTTAGTTTGAATAATAGAAACGTCGGCTCTTCTAAAACAGGTTTTATGGTATTTGACTGGTGTTTGAAATAAACGTTTTTGTTTTTTTACTTTGTAGTAAACTTAACCTCTATTTTTGCCAGCGGAACTCGAAATATCAAAAAAAAACACTTGATTAGCCTTATGGTCATTATTGATATTTAGTTACTGGACCAAATTTATTTTTACCTTTTACAGAATTACTCAGTTGCAAAAATAAGTTTCCCTCTCTTCCCATTCCCTCCAAACCGTTTATTCCGCGAAAAAACCCTCAACCTACATGTCAAAACTACCATCCATCTTTCCATCTTTCTCTCTTTCTTCCACCACTTTTCTACCTCCAAACTGTCCTCAATTTTTATGTATTTCATCGTTTTTCGCCCCCCCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>412 289 213 36 30 20</canonical_bands>
                <polymorphic_bands>412 309 213 36 30</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>235 175 170 155 54 40 36 30 28 27 22 20 8</canonical_bands>
                <polymorphic_bands>235 175 170 155 74 40 36 30 28 27 22 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTTACAGAAAATCGTTGAAGA</pcr_primer_p1>
		<pcr_primer_p2>CAGTCAAATACCATAAAACCTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTTACAGAAAATCGTTGAAGAACATTTGAAGTCTAAAAAATTTACCAATTTTTTATCATTGACAGATCTTTATGAATTTTCGAAAACTCAATAAAATTTTCGATGAAAAAGTTCGGAAAATGGCCAAAGAACTAAAACGGCTCACTCTAATTGGAGGGCTGCTGTGATAGAAGGGCTCTCCGAAAGTTCCTTAGTTTGAATAATAGAAACGTCGGCTCTTCTAAAACAGGTTTTATGGTATTTGACTG</canonical_amplicon>
		<polymorphic_amplicon>CTTTTACAGAAAATCGTTGAAGAACATTTGAAGTCTAAAAAATTTACCAATTTTTTATCATTGACAGATCTTTATGAATTTTCGAAAACTCAATAAARTTTTCGATGAAAAAGTTCGGAAAATGGCCAAAGAACTAAAACGGCTCACTCTAATTGGAGGGCTGCTGTGATAGAAGGGCTCTCCGAAAGTTCCTTAGTTTGAATAATAGAAACGTCGGCTCTTCTAAAACAGGTTTTATGGTATTTGACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30043</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>418928</contig_pos>
        <strand>+</strand>
        <context>TATGCCAATA[A/G]GCTATTAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTCCGTTCTAGACATTTTGCAAAGACTTGAAAGTACAGTATGCCAATA</left_flank>
        <right_flank>GCTATTAAAGCAGTCTTATCTTCCAAAAAAGACTTACACCATGACCATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCATTCCCTCCAAACCGTTTATTCCGCGAAAAAACCCTCAACCTACATGTCAAAACTACCATCCATCTTTCCATCTTTCTCTCTTTCTTCCACCACTTTTCTACCTCCAAACTGTCCTCAATTTTTATGTATTTCATCGTTTTTCGCCCCCCCCCCCCTACTTCTTTTTTTCGTGTTGTATTTCTCCCTCCGTATTTGGGTATAAAATGCCGCCCGTTTTTCTCTCCAAATACACACATACAATGATATTTGCGGGGTCCTGGTCTGCCGACTACGCCTCGAAATGCAAACACCTTTCATTCGTTTTTCCCTTTTTATACTGGTTACGGGACGGTGTAGTAGGAAAAAGAGAGGAATGGTTGTGTTTATGCAGGTGTATTTATATGATTCATGTTGTTTATGAGACATTGATTTATTGCTGGAAAAATTCATGCCGAATTAATTTTTATGATTCCGTTCTAGACATTTTGCAAAGACTTGAAAGTACAGTATGCCAATAAGCTATTAAAGCAGTCTTATCTTCCAAAAAAGACTTACACCATGACCATCAACTTTGAACCTATGTATCTCATTTCCTGTAAAAGATATCAAAAATTGGTCAATTGATAAATTGTTTATCATAATATCACAAACATTTTATCAATTGACACATTTTTGATATCTTTCATAGAAAGCGAGATAATCTAGCTCAAAGTTGATAGACAGGTGCTACTCAAATGGAGGTTTGATGGTAATTCTTGAAACATTTATTATTTAATTATTTTTTTTCAGGACAACTTTCGTACAAGATTTTTTGTGCTAAAACTATCCTATCTCAAATTTTGGTTAAGCTTCTATAGATAAAAACACCTTAATAGAAGCATCCTATACTTGCACTTTGAGCTCAATTATCTCAATTTCTAAAAGAGATGCCTAAAATGTGTCAACTAATAAAATACTTTTCATGATAACACTAGCATTTTATTAGTGGACACATTTTTGATATCTCTTATGCGAATTG</canonical>
            <polymorphic>CCATTCCCTCCAAACCGTTTATTCCGCGAAAAAACCCTCAACCTACATGTCAAAACTACCATCCATCTTTCCATCTTTCTCTCTTTCTTCCACCACTTTTCTACCTCCAAACTGTCCTCAATTTTTATGTATTTCATCGTTTTTCGCCCCCCCCCCCCTACTTCTTTTTTTCGTGTTGTATTTCTCCCTCCGTATTTGGGTATAAAATGCCGCCCGTTTTTCTCTCCAAATACACACATACAATGATATTTGCGGGGTCCTGGTCTGCCGACTACGCCTCGAAATGCAAACACCTTTCATTCGTTTTTCCCTTTTTATACTGGTTACGGGACGGTGTAGTAGGAAAAAGAGAGGAATGGTTGTGTTTATGCAGGTGTATTTATATGATTCATGTTGTTTATGAGACATTGATTTATTGCTGGAAAAATTCATGCCGAATTAATTTTTATGATTCCGTTCTAGACATTTTGCAAAGACTTGAAAGTACAGTATGCCAATARGCTATTAAAGCAGTCTTATCTTCCAAAAAAGACTTACACCATGACCATCAACTTTGAACCTATGTATCTCATTTCCTGTAAAAGATATCAAAAATTGGTCAATTGATAAATTGTTTATCATAATATCACAAACATTTTATCAATTGACACATTTTTGATATCTTTCATAGAAAGCGAGATAATCTAGCTCAAAGTTGATAGACAGGTGCTACTCAAATGGAGGTTTGATGGTAATTCTTGAAACATTTATTATTTAATTATTTTTTTTCAGGACAACTTTCGTACAAGATTTTTTGTGCTAAAACTATCCTATCTCAAATTTTGGTTAAGCTTCTATAGATAAAAACACCTTAATAGAAGCATCCTATACTTGCACTTTGAGCTCAATTATCTCAATTTCTAAAAGAGATGCCTAAAATGTGTCAACTAATAAAATACTTTTCATGATAACACTAGCATTTTATTAGTGGACACATTTTTGATATCTCTTATGCGAATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>501 186 143 118 52</canonical_bands>
                <polymorphic_bands>687 143 118 52</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>501 186 143 118 52</canonical_bands>
                <polymorphic_bands>687 143 118 52</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGATTCCGTTCTAGACATTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATCTTGTACGAAAGTTGTCCT</pcr_primer_p2>
		<pcr_amplicon_size>346</pcr_amplicon_size>
		<canonical_amplicon>TATGATTCCGTTCTAGACATTTTGCAAAGACTTGAAAGTACAGTATGCCAATAAGCTATTAAAGCAGTCTTATCTTCCAAAAAAGACTTACACCATGACCATCAACTTTGAACCTATGTATCTCATTTCCTGTAAAAGATATCAAAAATTGGTCAATTGATAAATTGTTTATCATAATATCACAAACATTTTATCAATTGACACATTTTTGATATCTTTCATAGAAAGCGAGATAATCTAGCTCAAAGTTGATAGACAGGTGCTACTCAAATGGAGGTTTGATGGTAATTCTTGAAACATTTATTATTTAATTATTTTTTTTCAGGACAACTTTCGTACAAGATTT</canonical_amplicon>
		<polymorphic_amplicon>TATGATTCCGTTCTAGACATTTTGCAAAGACTTGAAAGTACAGTATGCCAATARGCTATTAAAGCAGTCTTATCTTCCAAAAAAGACTTACACCATGACCATCAACTTTGAACCTATGTATCTCATTTCCTGTAAAAGATATCAAAAATTGGTCAATTGATAAATTGTTTATCATAATATCACAAACATTTTATCAATTGACACATTTTTGATATCTTTCATAGAAAGCGAGATAATCTAGCTCAAAGTTGATAGACAGGTGCTACTCAAATGGAGGTTTGATGGTAATTCTTGAAACATTTATTATTTAATTATTTTTTTTCAGGACAACTTTCGTACAAGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30044</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>420491</contig_pos>
        <strand></strand>
        <context>TTRATTAGGt[A/G]ttgtcggatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGT</left_flank>
        <right_flank>TTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTG</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTAACTCAACTCACAAGGTTTCGGCTCGAAAACTGACGAAGTTAATCTGTTTTTCACTTGTACTTTTTTTCCGTTAAAGCAACCACGTTTGAGTTTCCCAAATCCAAATACTGTAGTAATTTCGTATAACTAGGAAACCCGATTTACAGGGTTTTGAAAAACCAATTTTAACTGTTTCATCGAATACGTGGATGAGTTCGGAATGTTAAACGAAACTACTGAATCATCATGATTCTTCGAAATTATGTTTCTAAATTTAGCGAATCAATTTTGAAAAACACTAACTAGTAAGATCCTCATTTTCAATGTTTGCTAACAATTCAAACCATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATAAAATGAACATGTGTTTTCAAAATTTGATAAGTTGGATGTATTCTCAATTTTCGACAATTCCCATTTCCAACACCTGATGGCATGAGTTTTATTCTTCGTTGGTCTTT</canonical>
            <polymorphic>TTGTTAACTCAACTCACAAGGTTTCGGCTCGAAAACTGACGAAGTTAATCTGTTTTTCACTTGTACTTTTTTTCCGTTAAAGCAACCACGTTTGAGTTTCCCAAATCCAAATACTGTAGTAATTTCGTATAACTAGGAAACCCGATTTACAGGGTTTTGAAAAACCAATTTTAACTGTTTCATCGAATACGTGGATGAGTTCGGAATGTTAAACGAAACTACTGAATCATCATGATTCTTCGAAATTATGTTTCTAAATTTAGCGAATCAATTTTGAAAAACACTAACTAGTAAGATCCTCATTTTCAATGTTTGCTAACAATTCAAACCATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTRTTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATAAAATGAACATGTGTTTTCAAAATTTGATAAGTTGGATGTATTCTCAATTTTCGACAATTCCCATTTCCAACACCTGATGGCATGAGTTTTATTCTTCGTTGGTCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTTTACAAACACCTCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AATTTCGGTATCATAAACTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>422</pcr_amplicon_size>
		<canonical_amplicon>TGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATT</canonical_amplicon>
		<polymorphic_amplicon>TGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTRTTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30045</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>420522</contig_pos>
        <strand></strand>
        <context>ggcacctgag[A/G]attcgaaaag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAG</left_flank>
        <right_flank>ATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTT</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACTGACGAAGTTAATCTGTTTTTCACTTGTACTTTTTTTCCGTTAAAGCAACCACGTTTGAGTTTCCCAAATCCAAATACTGTAGTAATTTCGTATAACTAGGAAACCCGATTTACAGGGTTTTGAAAAACCAATTTTAACTGTTTCATCGAATACGTGGATGAGTTCGGAATGTTAAACGAAACTACTGAATCATCATGATTCTTCGAAATTATGTTTCTAAATTTAGCGAATCAATTTTGAAAAACACTAACTAGTAAGATCCTCATTTTCAATGTTTGCTAACAATTCAAACCATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATAAAATGAACATGTGTTTTCAAAATTTGATAAGTTGGATGTATTCTCAATTTTCGACAATTCCCATTTCCAACACCTGATGGCATGAGTTTTATTCTTCGTTGGTCTTTCTTTCTCTCCGTTTTCTTCTCAATTCAAAAA</canonical>
            <polymorphic>AAAACTGACGAAGTTAATCTGTTTTTCACTTGTACTTTTTTTCCGTTAAAGCAACCACGTTTGAGTTTCCCAAATCCAAATACTGTAGTAATTTCGTATAACTAGGAAACCCGATTTACAGGGTTTTGAAAAACCAATTTTAACTGTTTCATCGAATACGTGGATGAGTTCGGAATGTTAAACGAAACTACTGAATCATCATGATTCTTCGAAATTATGTTTCTAAATTTAGCGAATCAATTTTGAAAAACACTAACTAGTAAGATCCTCATTTTCAATGTTTGCTAACAATTCAAACCATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGRATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATAAAATGAACATGTGTTTTCAAAATTTGATAAGTTGGATGTATTCTCAATTTTCGACAATTCCCATTTCCAACACCTGATGGCATGAGTTTTATTCTTCGTTGGTCTTTCTTTCTCTCCGTTTTCTTCTCAATTCAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>225 210 176 118 86 80 64 41</canonical_bands>
                <polymorphic_bands>240 225 210 118 86 80 41</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>163 114 89 77 73 72 51 48 46 46 41 32 32 25 18 14 13 13 13 10 10</canonical_bands>
                <polymorphic_bands>209 114 89 77 73 72 51 48 46 41 32 32 25 18 14 13 13 13 10 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACACCTCAAAATTTTTCAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTAATCAATTTCGGTATCATAAAC</pcr_primer_p2>
		<pcr_amplicon_size>419</pcr_amplicon_size>
		<canonical_amplicon>AACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAA</canonical_amplicon>
		<polymorphic_amplicon>AACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGRATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30046</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>420572</contig_pos>
        <strand></strand>
        <context>cgtaatactt[T/C]agattttcag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTT</left_flank>
        <right_flank>AGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTT</right_flank>
        <qual_score>50</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAACCACGTTTGAGTTTCCCAAATCCAAATACTGTAGTAATTTCGTATAACTAGGAAACCCGATTTACAGGGTTTTGAAAAACCAATTTTAACTGTTTCATCGAATACGTGGATGAGTTCGGAATGTTAAACGAAACTACTGAATCATCATGATTCTTCGAAATTATGTTTCTAAATTTAGCGAATCAATTTTGAAAAACACTAACTAGTAAGATCCTCATTTTCAATGTTTGCTAACAATTCAAACCATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATAAAATGAACATGTGTTTTCAAAATTTGATAAGTTGGATGTATTCTCAATTTTCGACAATTCCCATTTCCAACACCTGATGGCATGAGTTTTATTCTTCGTTGGTCTTTCTTTCTCTCCGTTTTCTTCTCAATTCAAAAAAGATATATTACCATTATTCTAGACTGTTTCTTCTTGTCGTTTCTCCCCCA</canonical>
            <polymorphic>GCAACCACGTTTGAGTTTCCCAAATCCAAATACTGTAGTAATTTCGTATAACTAGGAAACCCGATTTACAGGGTTTTGAAAAACCAATTTTAACTGTTTCATCGAATACGTGGATGAGTTCGGAATGTTAAACGAAACTACTGAATCATCATGATTCTTCGAAATTATGTTTCTAAATTTAGCGAATCAATTTTGAAAAACACTAACTAGTAAGATCCTCATTTTCAATGTTTGCTAACAATTCAAACCATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTYAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATAAAATGAACATGTGTTTTCAAAATTTGATAAGTTGGATGTATTCTCAATTTTCGACAATTCCCATTTCCAACACCTGATGGCATGAGTTTTATTCTTCGTTGGTCTTTCTTTCTCTCCGTTTTCTTCTCAATTCAAAAAAGATATATTACCATTATTCTAGACTGTTTCTTCTTGTCGTTTCTCCCCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACACCTCAAAATTTTTCAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTAATCAATTTCGGTATCATAAAC</pcr_primer_p2>
		<pcr_amplicon_size>419</pcr_amplicon_size>
		<canonical_amplicon>AACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAA</canonical_amplicon>
		<polymorphic_amplicon>AACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTYAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30047</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>420641</contig_pos>
        <strand></strand>
        <context>aacatattcc[A/G]gagatgctgg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCC</left_flank>
        <right_flank>GAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAA</right_flank>
        <qual_score>49</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGGTTTTGAAAAACCAATTTTAACTGTTTCATCGAATACGTGGATGAGTTCGGAATGTTAAACGAAACTACTGAATCATCATGATTCTTCGAAATTATGTTTCTAAATTTAGCGAATCAATTTTGAAAAACACTAACTAGTAAGATCCTCATTTTCAATGTTTGCTAACAATTCAAACCATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATAAAATGAACATGTGTTTTCAAAATTTGATAAGTTGGATGTATTCTCAATTTTCGACAATTCCCATTTCCAACACCTGATGGCATGAGTTTTATTCTTCGTTGGTCTTTCTTTCTCTCCGTTTTCTTCTCAATTCAAAAAAGATATATTACCATTATTCTAGACTGTTTCTTCTTGTCGTTTCTCCCCCAAAATCCGAAATGTCCCTTTGTCTCTTTCTTTTTTCCCGGGGCATTTCGGCCTCTCTCTCCTGGTTTCTG</canonical>
            <polymorphic>AGGGTTTTGAAAAACCAATTTTAACTGTTTCATCGAATACGTGGATGAGTTCGGAATGTTAAACGAAACTACTGAATCATCATGATTCTTCGAAATTATGTTTCTAAATTTAGCGAATCAATTTTGAAAAACACTAACTAGTAAGATCCTCATTTTCAATGTTTGCTAACAATTCAAACCATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCRGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATAAAATGAACATGTGTTTTCAAAATTTGATAAGTTGGATGTATTCTCAATTTTCGACAATTCCCATTTCCAACACCTGATGGCATGAGTTTTATTCTTCGTTGGTCTTTCTTTCTCTCCGTTTTCTTCTCAATTCAAAAAAGATATATTACCATTATTCTAGACTGTTTCTTCTTGTCGTTTCTCCCCCAAAATCCGAAATGTCCCTTTGTCTCTTTCTTTTTTCCCGGGGCATTTCGGCCTCTCTCTCCTGGTTTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACACCTCAAAATTTTTCAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTAATCAATTTCGGTATCATAAAC</pcr_primer_p2>
		<pcr_amplicon_size>419</pcr_amplicon_size>
		<canonical_amplicon>AACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAA</canonical_amplicon>
		<polymorphic_amplicon>AACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCRGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30048</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>420670</contig_pos>
        <strand></strand>
        <context>ttcatatcaa[G/T]aaatcttttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAA</left_flank>
        <right_flank>AAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTT</right_flank>
        <qual_score>47</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATCGAATACGTGGATGAGTTCGGAATGTTAAACGAAACTACTGAATCATCATGATTCTTCGAAATTATGTTTCTAAATTTAGCGAATCAATTTTGAAAAACACTAACTAGTAAGATCCTCATTTTCAATGTTTGCTAACAATTCAAACCATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATAAAATGAACATGTGTTTTCAAAATTTGATAAGTTGGATGTATTCTCAATTTTCGACAATTCCCATTTCCAACACCTGATGGCATGAGTTTTATTCTTCGTTGGTCTTTCTTTCTCTCCGTTTTCTTCTCAATTCAAAAAAGATATATTACCATTATTCTAGACTGTTTCTTCTTGTCGTTTCTCCCCCAAAATCCGAAATGTCCCTTTGTCTCTTTCTTTTTTCCCGGGGCATTTCGGCCTCTCTCTCCTGGTTTCTGTCTCCGGAGGAGGACGGAGCGACGGTTCG</canonical>
            <polymorphic>TCATCGAATACGTGGATGAGTTCGGAATGTTAAACGAAACTACTGAATCATCATGATTCTTCGAAATTATGTTTCTAAATTTAGCGAATCAATTTTGAAAAACACTAACTAGTAAGATCCTCATTTTCAATGTTTGCTAACAATTCAAACCATGAAGCATGACAAGAAGATGCTGATGTTATTTTCGTTTCCTGATTTTTACTTTGTCGTGCCATATGTAGATCAAGGTATAAACTTGAGATGAAATATTACTATAATTAAAAGTTAATGGTTTACAAACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAKAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAATGTTTCAGTTAGAGGATAAAATGAACATGTGTTTTCAAAATTTGATAAGTTGGATGTATTCTCAATTTTCGACAATTCCCATTTCCAACACCTGATGGCATGAGTTTTATTCTTCGTTGGTCTTTCTTTCTCTCCGTTTTCTTCTCAATTCAAAAAAGATATATTACCATTATTCTAGACTGTTTCTTCTTGTCGTTTCTCCCCCAAAATCCGAAATGTCCCTTTGTCTCTTTCTTTTTTCCCGGGGCATTTCGGCCTCTCTCTCCTGGTTTCTGTCTCCGGAGGAGGACGGAGCGACGGTTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>374 278 139 104 52 28 25</canonical_bands>
                <polymorphic_bands>402 278 139 104 52 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACACCTCAAAATTTTTCAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTAATCAATTTCGGTATCATAAAC</pcr_primer_p2>
		<pcr_amplicon_size>419</pcr_amplicon_size>
		<canonical_amplicon>AACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAGAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAA</canonical_amplicon>
		<polymorphic_amplicon>AACACCTCAAAATTTTTCAAACATTAACAATTATTGATTAGGTATTGTCGGATTTAAAAAAACTGGCACCTGAGAATTCGAAAAGTGTTGCTTGTTTCGCTCTACGCAAAAAATCGTAATACTTTAGATTTTCAGCTCGCTCGTGCGATTTTCACAGTAAGGTTGGTTTTTTTTTCTGTATAAAACATATTCCAGAGATGCTGGGTATCATTTTCATATCAAKAAATCTTTTTTGTTAATTAAAAACCTAAATTCACAGAAATCAATTTCGTTTAATACGGTACCGGATTTTTGGGCGGAGCCTCGTAAATCGACACGAGCGCTGCTTTTTTTCGAAATTTCCAGGTGCCAGTTTTGAAACCGGAGTTATTTTAAAAAATTTTATGATTATGAAAGTTTATGATACCGAAATTGATTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30049</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>428430</contig_pos>
        <strand></strand>
        <context>tcagaatttc[C/T]gaaaatcttc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAGAACTTTCTAGAAGCCTTCAGAACTCTCTAGAATGTCTCAGAATTTC</left_flank>
        <right_flank>GAAAATCTTCAGAATACTCTAGAATTCTCCAGAATCATCAAGAATCTTTC</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCCAAATCTTGCAGAAGTCTCCAGAATTTTTCAGACTCTTCTAGACACTTCTAGAATCTTATAGAATCATCCAGAATCCAGATACCCCTAAGTACCTAAAGAACACTCTAGAATGCTTTAGAACCGTTCAGAATCGTCTAGACACCTTCAGAATCATCTATAAGCTTCCAGATTTACCCAGAATCTTCTCGAAACTTCTAGAACCCTTTAAAATCTTCCGGAAACCGGTAGACACCTCTAGAATCCTTTGGAACCCTCTAGAATCCTTCAAAATCTTCTAGAAACTTTCAAAATCTTACGTAATCTTTTAGAAGCATTTAGAATCATCCAAAATTCTCCAGAAGCCCTGAGAATCCTCTAGAAGCTTTGAGAATCTTTCAGACATCTCCAAAACCCTTCAGAACCCTTCAGAAACCTCGAAAATTTTCCAGAATGTTAACAACTCTTCTAGAACTTTCTAGAAGCCTTCAGAACTCTCTAGAATGTCTCAGAATTTCCGAAAATCTTCAGAATACTCTAGAATTCTCCAGAATCATCAAGAATCTTTCAGTATTTCTCTAGACATCTTTCCTATCTTCTCGAATTCTCAAAATTCTTCTCTGATCAAGATCAAAGGACCATTGTCCTTTCGAGACAGACACACTTCCAATTAGCAACAGCTGCAGGTGTCACGCTGTCTTGTCAAAACATTTCGAGACAGTAACCTAACAACAACATAGCTTGTCTAGGATCTTATCGGCGACTGAGATCAAAGGAACAACTTCAAGACGTAGTATCCGAAAACTGATCTTTGATTCCTACAGTTGCCCAACTTTTGAAAGCAAAGTACATTTCGTTATAGAAAAACAATTTCTAATTAGCATATGAATCACAGGATCTTATGATCGGAGAAGGAGGAAGGGGTGAAAGTTAAAGTTTCGTGGCCAGGTAAGAGGCTGGGGGTACTGTAGTTGAGGGACTGAGAAAGGGGGCTACAGTGATCCTACCTATTTCTTCGT</canonical>
            <polymorphic>CTTCCAAATCTTGCAGAAGTCTCCAGAATTTTTCAGACTCTTCTAGACACTTCTAGAATCTTATAGAATCATCCAGAATCCAGATACCCCTAAGTACCTAAAGAACACTCTAGAATGCTTTAGAACCGTTCAGAATCGTCTAGACACCTTCAGAATCATCTATAAGCTTCCAGATTTACCCAGAATCTTCTCGAAACTTCTAGAACCCTTTAAAATCTTCCGGAAACCGGTAGACACCTCTAGAATCCTTTGGAACCCTCTAGAATCCTTCAAAATCTTCTAGAAACTTTCAAAATCTTACGTAATCTTTTAGAAGCATTTAGAATCATCCAAAATTCTCCAGAAGCCCTGAGAATCCTCTAGAAGCTTTGAGAATCTTTCAGACATCTCCAAAACCCTTCAGAACCCTTCAGAAACCTCGAAAATTTTCCAGAATGTTAACAACTCTTCTAGAACTTTCTAGAAGCCTTCAGAACTCTCTAGAATGTCTCAGAATTTCYGAAAATCTTCAGAATACTCTAGAATTCTCCAGAATCATCAAGAATCTTTCAGTATTTCTCTAGACATCTTTCCTATCTTCTCGAATTCTCAAAATTCTTCTCTGATCAAGATCAAAGGACCATTGTCCTTTCGAGACAGACACACTTCCAATTAGCAACAGCTGCAGGTGTCACGCTGTCTTGTCAAAACATTTCGAGACAGTAACCTAACAACAACATAGCTTGTCTAGGATCTTATCGGCGACTGAGATCAAAGGAACAACTTCAAGACGTAGTATCCGAAAACTGATCTTTGATTCCTACAGTTGCCCAACTTTTGAAAGCAAAGTACATTTCGTTATAGAAAAACAATTTCTAATTAGCATATGAATCACAGGATCTTATGATCGGAGAAGGAGGAAGGGGTGAAAGTTAAAGTTTCGTGGCCAGGTAAGAGGCTGGGGGTACTGTAGTTGAGGGACTGAGAAAGGGGGCTACAGTGATCCTACCTATTTCTTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGGAATTTCAGATTCTTTTA</pcr_primer_p1>
		<pcr_primer_p2>CAATGGTCCTTTGATCTTGA</pcr_primer_p2>
		<pcr_amplicon_size>729</pcr_amplicon_size>
		<canonical_amplicon>CCGAAAATCTTCAGAATACTCTAGAATTCTCCAGAATCATCAAGAATCTTTCAGTATTTCTCTAGACATCTTTCCTATCTTCTCGAATTCTCAAAATTCTTCTCTGATCAAGATCAAAGGACCATTG</canonical_amplicon>
		<polymorphic_amplicon>CYGAAAATCTTCAGAATACTCTAGAATTCTCCAGAATCATCAAGAATCTTTCAGTATTTCTCTAGACATCTTTCCTATCTTCTCGAATTCTCAAAATTCTTCTCTGATCAAGATCAAAGGACCATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30050</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>428485</contig_pos>
        <strand></strand>
        <context>tctttcagta[T/G]ttctctagac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATCTTCAGAATACTCTAGAATTCTCCAGAATCATCAAGAATCTTTCAGTA</left_flank>
        <right_flank>TTCTCTAGACATCTTTCCTATCTTCTCGAATTCTCAAAATTCTTCTCTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATCTTATAGAATCATCCAGAATCCAGATACCCCTAAGTACCTAAAGAACACTCTAGAATGCTTTAGAACCGTTCAGAATCGTCTAGACACCTTCAGAATCATCTATAAGCTTCCAGATTTACCCAGAATCTTCTCGAAACTTCTAGAACCCTTTAAAATCTTCCGGAAACCGGTAGACACCTCTAGAATCCTTTGGAACCCTCTAGAATCCTTCAAAATCTTCTAGAAACTTTCAAAATCTTACGTAATCTTTTAGAAGCATTTAGAATCATCCAAAATTCTCCAGAAGCCCTGAGAATCCTCTAGAAGCTTTGAGAATCTTTCAGACATCTCCAAAACCCTTCAGAACCCTTCAGAAACCTCGAAAATTTTCCAGAATGTTAACAACTCTTCTAGAACTTTCTAGAAGCCTTCAGAACTCTCTAGAATGTCTCAGAATTTCCGAAAATCTTCAGAATACTCTAGAATTCTCCAGAATCATCAAGAATCTTTCAGTATTTCTCTAGACATCTTTCCTATCTTCTCGAATTCTCAAAATTCTTCTCTGATCAAGATCAAAGGACCATTGTCCTTTCGAGACAGACACACTTCCAATTAGCAACAGCTGCAGGTGTCACGCTGTCTTGTCAAAACATTTCGAGACAGTAACCTAACAACAACATAGCTTGTCTAGGATCTTATCGGCGACTGAGATCAAAGGAACAACTTCAAGACGTAGTATCCGAAAACTGATCTTTGATTCCTACAGTTGCCCAACTTTTGAAAGCAAAGTACATTTCGTTATAGAAAAACAATTTCTAATTAGCATATGAATCACAGGATCTTATGATCGGAGAAGGAGGAAGGGGTGAAAGTTAAAGTTTCGTGGCCAGGTAAGAGGCTGGGGGTACTGTAGTTGAGGGACTGAGAAAGGGGGCTACAGTGATCCTACCTATTTCTTCGTTACAGTAATCTTTGTAGTTTTCAAAGAATTTTCACTACAGTAATCCTTTTAATTT</canonical>
            <polymorphic>GAATCTTATAGAATCATCCAGAATCCAGATACCCCTAAGTACCTAAAGAACACTCTAGAATGCTTTAGAACCGTTCAGAATCGTCTAGACACCTTCAGAATCATCTATAAGCTTCCAGATTTACCCAGAATCTTCTCGAAACTTCTAGAACCCTTTAAAATCTTCCGGAAACCGGTAGACACCTCTAGAATCCTTTGGAACCCTCTAGAATCCTTCAAAATCTTCTAGAAACTTTCAAAATCTTACGTAATCTTTTAGAAGCATTTAGAATCATCCAAAATTCTCCAGAAGCCCTGAGAATCCTCTAGAAGCTTTGAGAATCTTTCAGACATCTCCAAAACCCTTCAGAACCCTTCAGAAACCTCGAAAATTTTCCAGAATGTTAACAACTCTTCTAGAACTTTCTAGAAGCCTTCAGAACTCTCTAGAATGTCTCAGAATTTCCGAAAATCTTCAGAATACTCTAGAATTCTCCAGAATCATCAAGAATCTTTCAGTAKTTCTCTAGACATCTTTCCTATCTTCTCGAATTCTCAAAATTCTTCTCTGATCAAGATCAAAGGACCATTGTCCTTTCGAGACAGACACACTTCCAATTAGCAACAGCTGCAGGTGTCACGCTGTCTTGTCAAAACATTTCGAGACAGTAACCTAACAACAACATAGCTTGTCTAGGATCTTATCGGCGACTGAGATCAAAGGAACAACTTCAAGACGTAGTATCCGAAAACTGATCTTTGATTCCTACAGTTGCCCAACTTTTGAAAGCAAAGTACATTTCGTTATAGAAAAACAATTTCTAATTAGCATATGAATCACAGGATCTTATGATCGGAGAAGGAGGAAGGGGTGAAAGTTAAAGTTTCGTGGCCAGGTAAGAGGCTGGGGGTACTGTAGTTGAGGGACTGAGAAAGGGGGCTACAGTGATCCTACCTATTTCTTCGTTACAGTAATCTTTGTAGTTTTCAAAGAATTTTCACTACAGTAATCCTTTTAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGGAATTTCAGATTCTTTTA</pcr_primer_p1>
		<pcr_primer_p2>CAATGGTCCTTTGATCTTGA</pcr_primer_p2>
		<pcr_amplicon_size>729</pcr_amplicon_size>
		<canonical_amplicon>ATTTCTCTAGACATCTTTCCTATCTTCTCGAATTCTCAAAATTCTTCTCTGATCAAGATCAAAGGACCATTG</canonical_amplicon>
		<polymorphic_amplicon>AKTTCTCTAGACATCTTTCCTATCTTCTCGAATTCTCAAAATTCTTCTCTGATCAAGATCAAAGGACCATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30051</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>428527</contig_pos>
        <strand></strand>
        <context>tctcaaaatt[C/T]ttctCTGATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCAGTATTTCTCTAGACATCTTTCCTATCTTCTCGAATTCTCAAAATT</left_flank>
        <right_flank>TTCTCTGATCAAGATCAAAGGACCATTGTCCTTTCGAGACAGACACACTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAAAGAACACTCTAGAATGCTTTAGAACCGTTCAGAATCGTCTAGACACCTTCAGAATCATCTATAAGCTTCCAGATTTACCCAGAATCTTCTCGAAACTTCTAGAACCCTTTAAAATCTTCCGGAAACCGGTAGACACCTCTAGAATCCTTTGGAACCCTCTAGAATCCTTCAAAATCTTCTAGAAACTTTCAAAATCTTACGTAATCTTTTAGAAGCATTTAGAATCATCCAAAATTCTCCAGAAGCCCTGAGAATCCTCTAGAAGCTTTGAGAATCTTTCAGACATCTCCAAAACCCTTCAGAACCCTTCAGAAACCTCGAAAATTTTCCAGAATGTTAACAACTCTTCTAGAACTTTCTAGAAGCCTTCAGAACTCTCTAGAATGTCTCAGAATTTCCGAAAATCTTCAGAATACTCTAGAATTCTCCAGAATCATCAAGAATCTTTCAGTATTTCTCTAGACATCTTTCCTATCTTCTCGAATTCTCAAAATTCTTCTCTGATCAAGATCAAAGGACCATTGTCCTTTCGAGACAGACACACTTCCAATTAGCAACAGCTGCAGGTGTCACGCTGTCTTGTCAAAACATTTCGAGACAGTAACCTAACAACAACATAGCTTGTCTAGGATCTTATCGGCGACTGAGATCAAAGGAACAACTTCAAGACGTAGTATCCGAAAACTGATCTTTGATTCCTACAGTTGCCCAACTTTTGAAAGCAAAGTACATTTCGTTATAGAAAAACAATTTCTAATTAGCATATGAATCACAGGATCTTATGATCGGAGAAGGAGGAAGGGGTGAAAGTTAAAGTTTCGTGGCCAGGTAAGAGGCTGGGGGTACTGTAGTTGAGGGACTGAGAAAGGGGGCTACAGTGATCCTACCTATTTCTTCGTTACAGTAATCTTTGTAGTTTTCAAAGAATTTTCACTACAGTAATCCTTTTAATTTTTGATTTTTTGTCTGTTGCTCAGCTCGGAGAGTCCCCAAATT</canonical>
            <polymorphic>CTAAAGAACACTCTAGAATGCTTTAGAACCGTTCAGAATCGTCTAGACACCTTCAGAATCATCTATAAGCTTCCAGATTTACCCAGAATCTTCTCGAAACTTCTAGAACCCTTTAAAATCTTCCGGAAACCGGTAGACACCTCTAGAATCCTTTGGAACCCTCTAGAATCCTTCAAAATCTTCTAGAAACTTTCAAAATCTTACGTAATCTTTTAGAAGCATTTAGAATCATCCAAAATTCTCCAGAAGCCCTGAGAATCCTCTAGAAGCTTTGAGAATCTTTCAGACATCTCCAAAACCCTTCAGAACCCTTCAGAAACCTCGAAAATTTTCCAGAATGTTAACAACTCTTCTAGAACTTTCTAGAAGCCTTCAGAACTCTCTAGAATGTCTCAGAATTTCCGAAAATCTTCAGAATACTCTAGAATTCTCCAGAATCATCAAGAATCTTTCAGTATTTCTCTAGACATCTTTCCTATCTTCTCGAATTCTCAAAATTYTTCTCTGATCAAGATCAAAGGACCATTGTCCTTTCGAGACAGACACACTTCCAATTAGCAACAGCTGCAGGTGTCACGCTGTCTTGTCAAAACATTTCGAGACAGTAACCTAACAACAACATAGCTTGTCTAGGATCTTATCGGCGACTGAGATCAAAGGAACAACTTCAAGACGTAGTATCCGAAAACTGATCTTTGATTCCTACAGTTGCCCAACTTTTGAAAGCAAAGTACATTTCGTTATAGAAAAACAATTTCTAATTAGCATATGAATCACAGGATCTTATGATCGGAGAAGGAGGAAGGGGTGAAAGTTAAAGTTTCGTGGCCAGGTAAGAGGCTGGGGGTACTGTAGTTGAGGGACTGAGAAAGGGGGCTACAGTGATCCTACCTATTTCTTCGTTACAGTAATCTTTGTAGTTTTCAAAGAATTTTCACTACAGTAATCCTTTTAATTTTTGATTTTTTGTCTGTTGCTCAGCTCGGAGAGTCCCCAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>434 236 90 71 70 61 29 9</canonical_bands>
                <polymorphic_bands>443 236 90 71 70 61 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGGAATTTCAGATTCTTTTA</pcr_primer_p1>
		<pcr_primer_p2>CTAATTGGAAGTGTGTCTGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>759</pcr_amplicon_size>
		<canonical_amplicon>TCTTCTCTGATCAAGATCAAAGGACCATTGTCCTTTCGAGACAGACACACTTCCAATTAG</canonical_amplicon>
		<polymorphic_amplicon>TYTTCTCTGATCAAGATCAAAGGACCATTGTCCTTTCGAGACAGACACACTTCCAATTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30052</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>543772</contig_pos>
        <strand>+</strand>
        <context>CTTTGAAACC[A/C]TTACTGTCCG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAAGGATCTATGTTTTGGAATTCTCATGACTGTCTTAGTCCTTTGAAACC</left_flank>
        <right_flank>TTACTGTCCGTGGCGTTAAATGAACACATGAACACATGTGTCAGTTTAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTAGCTCACTTGGGGGATCTGGAATATCAATATTTCTGTTTCGGGAAGTTGTGAAGAGTAAGCGTTGGGAGCGTTTAGTTGGTAACAAAATAGGAACGGTTCGCTTGCAAACCAACAAGGTAGTAAAAAACTATTCTCACCTTGAACAACTGCAACATGGAAGCAACCATAACACTGACTTGACTTCCAGCTGCTCCAACAACTGCAACCACTGGTTGTCGTGTATATGATCCAGTTGATCCATCTGCACATGTCACACCATCTCCATTCGACATTACAGATTTGATGAATTCCAGTGTCTGTTCCAGGGCATAGCTGTCTACGGAGCTGCAAGGTAATTGAGTTGTCAGATACTTGAACGAACACTTTCTCATTGTTCATGTATGTATTTAAAAACGCGGGGATACCGTGTTTTTTAATATCTCCAAAAACACATTCCAGACAGTCTCAAGGATCTATGTTTTGGAATTCTCATGACTGTCTTAGTCCTTTGAAACCCTTACTGTCCGTGGCGTTAAATGAACACATGAACACATGTGTCAGTTTAATATAACATTTTTTAGCGTTTTGAAACTGAAAAAAATGCATTCAATCATTTTCAGTCATAAAAAACTACTATGAATAAACCCGGTTTCAAACTTTGGAGAAATTTCCTGCATAATATATGAAAAACAGTGTGTACACTAGAAATTAAAACATGAATAATTTTGTAAAATAGGCCAAACTAAAGCTTCCAGAATGATAACTCGTCCCTAGAATACACACCAATGATAGTCTTTTGTTTTTGACAAATTCCACTCGAATCCCAACTTCTCACCACGTATCCAATATCTGTGCTCCTAAACTGGCTTGTGGCAACAGCTGCCTATCTCGATTGACTTTTTCCAATGCAAATAACATTGCCACCATTCTCTGCACTCCCTGATCTGCCTTGATTTTTCCACACTGATGTGATGCATTTCGACCGGCTTCATGAATTGGAAATAGTCCTCCAAGGAC</canonical>
            <polymorphic>TGTAGCTCACTTGGGGGATCTGGAATATCAATATTTCTGTTTCGGGAAGTTGTGAAGAGTAAGCGTTGGGAGCGTTTAGTTGGTAACAAAATAGGAACGGTTCGCTTGCAAACCAACAAGGTAGTAAAAAACTATTCTCACCTTGAACAACTGCAACATGGAAGCAACCATAACACTGACTTGACTTCCAGCTGCTCCAACAACTGCAACCACTGGTTGTCGTGTATATGATCCAGTTGATCCATCTGCACATGTCACACCATCTCCATTCGACATTACAGATTTGATGAATTCCAGTGTCTGTTCCAGGGCATAGCTGTCTACGGAGCTGCAAGGTAATTGAGTTGTCAGATACTTGAACGAACACTTTCTCATTGTTCATGTATGTATTTAAAAACGCGGGGATACCGTGTTTTTTAATATCTCCAAAAACACATTCCAGACAGTCTCAAGGATCTATGTTTTGGAATTCTCATGACTGTCTTAGTCCTTTGAAACCMTTACTGTCCGTGGCGTTAAATGAACACATGAACACATGTGTCAGTTTAATATAACATTTTTTAGCGTTTTGAAACTGAAAAAAATGCATTCAATCATTTTCAGTCATAAAAAACTACTATGAATAAACCCGGTTTCAAACTTTGGAGAAATTTCCTGCATAATATATGAAAAACAGTGTGTACACTAGAAATTAAAACATGAATAATTTTGTAAAATAGGCCAAACTAAAGCTTCCAGAATGATAACTCGTCCCTAGAATACACACCAATGATAGTCTTTTGTTTTTGACAAATTCCACTCGAATCCCAACTTCTCACCACGTATCCAATATCTGTGCTCCTAAACTGGCTTGTGGCAACAGCTGCCTATCTCGATTGACTTTTTCCAATGCAAATAACATTGCCACCATTCTCTGCACTCCCTGATCTGCCTTGATTTTTCCACACTGATGTGATGCATTTCGACCGGCTTCATGAATTGGAAATAGTCCTCCAAGGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGACAGTCTCAAGGATCTATGT</pcr_primer_p1>
		<pcr_primer_p2>TTCTAGTGTACACACTGTTTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAGACAGTCTCAAGGATCTATGTTTTGGAATTCTCATGACTGTCTTAGTCCTTTGAAACCCTTACTGTCCGTGGCGTTAAATGAACACATGAACACATGTGTCAGTTTAATATAACATTTTTTAGCGTTTTGAAACTGAAAAAAATGCATTCAATCATTTTCAGTCATAAAAAACTACTATGAATAAACCCGGTTTCAAACTTTGGAGAAATTTCCTGCATAATATATGAAAAACAGTGTGTACACTAGAA</canonical_amplicon>
		<polymorphic_amplicon>CAGACAGTCTCAAGGATCTATGTTTTGGAATTCTCATGACTGTCTTAGTCCTTTGAAACCMTTACTGTCCGTGGCGTTAAATGAACACATGAACACATGTGTCAGTTTAATATAACATTTTTTAGCGTTTTGAAACTGAAAAAAATGCATTCAATCATTTTCAGTCATAAAAAACTACTATGAATAAACCCGGTTTCAAACTTTGGAGAAATTTCCTGCATAATATATGAAAAACAGTGTGTACACTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30053</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>548130</contig_pos>
        <strand>+</strand>
        <context>TCAGTTGGTA[A/G]TTTTTTGGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTCCCCCTTTAAATGAAAATTATTCACCATGAAATCATATCAGTTGGTA</left_flank>
        <right_flank>TTTTTTGGTTTTCCTATTCAGAACCGAACCAATGTAAAACCTGTAACAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCATGCAAAAATGCATAATCTTGAACATTAACATTCTAAGGGGCCTTTCTGTTACAGGTTTTACATTGGTTCGGTTCTGAATAGGAAAACCAAAAAAATACCAACTGATATGATTTCATGGTGAATAATTTTCATTTAAAGGGGGACTCCGACCAANAATTTTTATTGCATTAAAATGTGTTAAAATTTATCTATTTTTCAAATATTATTGCGAAAAAATTCAANNNNNNNNNNNCACTGTCGGCGACTTGAAAAAAAGGCTGTCAGGTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGCCGTTTTTCGGGGATTTCGGATTTTCTTTGAATTTTTTCGCAATAATATTTGAAAAATAGATAAATTTTAACACATTTTAATGCAATAAAAATTTTTGGTCGGAGTCCCCCTTTAAATGAAAATTATTCACCATGAAATCATATCAGTTGGTATTTTTTTGGTTTTCCTATTCAGAACCGAACCAATGTAAAACCTGTAACAGAAAGGCCCCTTAGAATGTTAATGTTCAAGATTATGCATTTTTGCATGGTTTAAAAAAACTTAATCGCGAAACAATTTTTTTCAACAAAAAATTGGTAAATTTTGTAGAGCTGTTACTGATTGAAAGAATGAAACGGTGAAAAATGGAAATGTTGGACTAAATTATCTCTGTTCTTTTAGAAGAAAATCTCAACGAAAATGATGTATCATATAATCAGTTAACATTTTTTACCTAATCGCCGGTCTACAATGGATATTTTTGTAAAATGCTTCATTATTTACATCCGCCCTATTCTTGAGTATGGTACAATTGTTTTCTCTCCCGTCATCAAGGAGCAAATCAGGCTCCTGGAAAGCGTCCAAAAATCTTTCCTCTATAGATGCTACAAAAAATTTAACTATCCCTATGTATCTTATTTCAATTGTCTCCGTGAGTATAACTTAGAATCTCT</canonical>
            <polymorphic>ACCATGCAAAAATGCATAATCTTGAACATTAACATTCTAAGGGGCCTTTCTGTTACAGGTTTTACATTGGTTCGGTTCTGAATAGGAAAACCAAAAAAATACCAACTGATATGATTTCATGGTGAATAATTTTCATTTAAAGGGGGACTCCGACCAANAATTTTTATTGCATTAAAATGTGTTAAAATTTATCTATTTTTCAAATATTATTGCGAAAAAATTCAANNNNNNNNNNNCACTGTCGGCGACTTGAAAAAAAGGCTGTCAGGTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGCCGTTTTTCGGGGATTTCGGATTTTCTTTGAATTTTTTCGCAATAATATTTGAAAAATAGATAAATTTTAACACATTTTAATGCAATAAAAATTTTTGGTCGGAGTCCCCCTTTAAATGAAAATTATTCACCATGAAATCATATCAGTTGGTARTTTTTTGGTTTTCCTATTCAGAACCGAACCAATGTAAAACCTGTAACAGAAAGGCCCCTTAGAATGTTAATGTTCAAGATTATGCATTTTTGCATGGTTTAAAAAAACTTAATCGCGAAACAATTTTTTTCAACAAAAAATTGGTAAATTTTGTAGAGCTGTTACTGATTGAAAGAATGAAACGGTGAAAAATGGAAATGTTGGACTAAATTATCTCTGTTCTTTTAGAAGAAAATCTCAACGAAAATGATGTATCATATAATCAGTTAACATTTTTTACCTAATCGCCGGTCTACAATGGATATTTTTGTAAAATGCTTCATTATTTACATCCGCCCTATTCTTGAGTATGGTACAATTGTTTTCTCTCCCGTCATCAAGGAGCAAATCAGGCTCCTGGAAAGCGTCCAAAAATCTTTCCTCTATAGATGCTACAAAAAATTTAACTATCCCTATGTATCTTATTTCAATTGTCTCCGTGAGTATAACTTAGAATCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCCCCCTTTAAATGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCACCGTTTCATTCTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AGTCCCCCTTTAAATGAAAATTATTCACCATGAAATCATATCAGTTGGTATTTTTTTGGTTTTCCTATTCAGAACCGAACCAATGTAAAACCTGTAACAGAAAGGCCCCTTAGAATGTTAATGTTCAAGATTATGCATTTTTGCATGGTTTAAAAAAACTTAATCGCGAAACAATTTTTTTCAACAAAAAATTGGTAAATTTTGTAGAGCTGTTACTGATTGAAAGAATGAAACGGTGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AGTCCCCCTTTAAATGAAAATTATTCACCATGAAATCATATCAGTTGGTARTTTTTTGGTTTTCCTATTCAGAACCGAACCAATGTAAAACCTGTAACAGAAAGGCCCCTTAGAATGTTAATGTTCAAGATTATGCATTTTTGCATGGTTTAAAAAAACTTAATCGCGAAACAATTTTTTTCAACAAAAAATTGGTAAATTTTGTAGAGCTGTTACTGATTGAAAGAATGAAACGGTGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30054</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>548177</contig_pos>
        <strand>+</strand>
        <context>AAACCTGTAA[C/T]AGAAAGGCCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTATTTTTTTGGTTTTCCTATTCAGAACCGAACCAATGTAAAACCTGTAA</left_flank>
        <right_flank>AGAAAGGCCCCTTAGAATGTTAATGTTCAAGATTATGCATTTTTGCATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGTTACAGGTTTTACATTGGTTCGGTTCTGAATAGGAAAACCAAAAAAATACCAACTGATATGATTTCATGGTGAATAATTTTCATTTAAAGGGGGACTCCGACCAANAATTTTTATTGCATTAAAATGTGTTAAAATTTATCTATTTTTCAAATATTATTGCGAAAAAATTCAANNNNNNNNNNNCACTGTCGGCGACTTGAAAAAAAGGCTGTCAGGTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGCCGTTTTTCGGGGATTTCGGATTTTCTTTGAATTTTTTCGCAATAATATTTGAAAAATAGATAAATTTTAACACATTTTAATGCAATAAAAATTTTTGGTCGGAGTCCCCCTTTAAATGAAAATTATTCACCATGAAATCATATCAGTTGGTATTTTTTTGGTTTTCCTATTCAGAACCGAACCAATGTAAAACCTGTAACAGAAAGGCCCCTTAGAATGTTAATGTTCAAGATTATGCATTTTTGCATGGTTTAAAAAAACTTAATCGCGAAACAATTTTTTTCAACAAAAAATTGGTAAATTTTGTAGAGCTGTTACTGATTGAAAGAATGAAACGGTGAAAAATGGAAATGTTGGACTAAATTATCTCTGTTCTTTTAGAAGAAAATCTCAACGAAAATGATGTATCATATAATCAGTTAACATTTTTTACCTAATCGCCGGTCTACAATGGATATTTTTGTAAAATGCTTCATTATTTACATCCGCCCTATTCTTGAGTATGGTACAATTGTTTTCTCTCCCGTCATCAAGGAGCAAATCAGGCTCCTGGAAAGCGTCCAAAAATCTTTCCTCTATAGATGCTACAAAAAATTTAACTATCCCTATGTATCTTATTTCAATTGTCTCCGTGAGTATAACTTAGAATCTCTAGAGTATCGTAGACTAATTTCTGATCTAGTTTTCATGTATAAAATAC</canonical>
            <polymorphic>TTCTGTTACAGGTTTTACATTGGTTCGGTTCTGAATAGGAAAACCAAAAAAATACCAACTGATATGATTTCATGGTGAATAATTTTCATTTAAAGGGGGACTCCGACCAANAATTTTTATTGCATTAAAATGTGTTAAAATTTATCTATTTTTCAAATATTATTGCGAAAAAATTCAANNNNNNNNNNNCACTGTCGGCGACTTGAAAAAAAGGCTGTCAGGTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGCCGTTTTTCGGGGATTTCGGATTTTCTTTGAATTTTTTCGCAATAATATTTGAAAAATAGATAAATTTTAACACATTTTAATGCAATAAAAATTTTTGGTCGGAGTCCCCCTTTAAATGAAAATTATTCACCATGAAATCATATCAGTTGGTATTTTTTTGGTTTTCCTATTCAGAACCGAACCAATGTAAAACCTGTAAYAGAAAGGCCCCTTAGAATGTTAATGTTCAAGATTATGCATTTTTGCATGGTTTAAAAAAACTTAATCGCGAAACAATTTTTTTCAACAAAAAATTGGTAAATTTTGTAGAGCTGTTACTGATTGAAAGAATGAAACGGTGAAAAATGGAAATGTTGGACTAAATTATCTCTGTTCTTTTAGAAGAAAATCTCAACGAAAATGATGTATCATATAATCAGTTAACATTTTTTACCTAATCGCCGGTCTACAATGGATATTTTTGTAAAATGCTTCATTATTTACATCCGCCCTATTCTTGAGTATGGTACAATTGTTTTCTCTCCCGTCATCAAGGAGCAAATCAGGCTCCTGGAAAGCGTCCAAAAATCTTTCCTCTATAGATGCTACAAAAAATTTAACTATCCCTATGTATCTTATTTCAATTGTCTCCGTGAGTATAACTTAGAATCTCTAGAGTATCGTAGACTAATTTCTGATCTAGTTTTCATGTATAAAATAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>491 387 118 4</canonical_bands>
                <polymorphic_bands>609 387 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAAATTATTCACCATGAAATC</pcr_primer_p1>
		<pcr_primer_p2>AATTTAGTCCAACATTTCCATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAAAATTATTCACCATGAAATCATATCAGTTGGTATTTTTTTGGTTTTCCTATTCAGAACCGAACCAATGTAAAACCTGTAACAGAAAGGCCCCTTAGAATGTTAATGTTCAAGATTATGCATTTTTGCATGGTTTAAAAAAACTTAATCGCGAAACAATTTTTTTCAACAAAAAATTGGTAAATTTTGTAGAGCTGTTACTGATTGAAAGAATGAAACGGTGAAAAATGGAAATGTTGGACTAAATT</canonical_amplicon>
		<polymorphic_amplicon>TGAAAATTATTCACCATGAAATCATATCAGTTGGTATTTTTTTGGTTTTCCTATTCAGAACCGAACCAATGTAAAACCTGTAAYAGAAAGGCCCCTTAGAATGTTAATGTTCAAGATTATGCATTTTTGCATGGTTTAAAAAAACTTAATCGCGAAACAATTTTTTTCAACAAAAAATTGGTAAATTTTGTAGAGCTGTTACTGATTGAAAGAATGAAACGGTGAAAAATGGAAATGTTGGACTAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30055</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>576047</contig_pos>
        <strand></strand>
        <context>atctttcaca[A/G]raagttagat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACA</left_flank>
        <right_flank>AAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGTACTCGAGTTTAAAGTAACATATATGTAGAGTGGAATTCTAGAGCATTAACCATAATATTGAATTTTCAAAGCCAGCTTACCTCTACCGGAGAAGCCTGTGGACCGCAAACAGGTTGCTCCTGAATTCGATTTTCAGAAACGTTGACTCCTTCAGAAGAACAAGATGCGGTCATAGCTTTGACAAACTGCTCTACCACGTTCAACGCATTTAATGCATTCTCATTTCTGAAGCTAGATGGAGTCGTCAAAAAGAAGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGTTCCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTTGCATACCACATAAAGAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTATTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATTTCCTGGTAACTTAATTCAAATGGCTAAGAATCTTTATTGGGAACTTTTTTGTCAGGTTTTCTCAAGAATAGATTTACCTTTCACTTTTTTTCCAACTTTCCCATAAGATAAGTTATTTGTTTTTTGAAAGTAGGCCAGAAAAGGTATTGATTATCCGAATGAAGGGATTTCAAACGTTTTAGCAAAATCCAGACATCCTACGAAACTCATAGA</canonical>
            <polymorphic>CGGTACTCGAGTTTAAAGTAACATATATGTAGAGTGGAATTCTAGAGCATTAACCATAATATTGAATTTTCAAAGCCAGCTTACCTCTACCGGAGAAGCCTGTGGACCGCAAACAGGTTGCTCCTGAATTCGATTTTCAGAAACGTTGACTCCTTCAGAAGAACAAGATGCGGTCATAGCTTTGACAAACTGCTCTACCACGTTCAACGCATTTAATGCATTCTCATTTCTGAAGCTAGATGGAGTCGTCAAAAAGAAGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGTTCCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACARAAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTTGCATACCACATAAAGAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTATTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATTTCCTGGTAACTTAATTCAAATGGCTAAGAATCTTTATTGGGAACTTTTTTGTCAGGTTTTCTCAAGAATAGATTTACCTTTCACTTTTTTTCCAACTTTCCCATAAGATAAGTTATTTGTTTTTTGAAAGTAGGCCAGAAAAGGTATTGATTATCCGAATGAAGGGATTTCAAACGTTTTAGCAAAATCCAGACATCCTACGAAACTCATAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTGTATATTCATTGCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>CAGCACAAGAATAGAACAAGAGT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTG</canonical_amplicon>
		<polymorphic_amplicon>TGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACARAAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30056</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>576048</contig_pos>
        <strand></strand>
        <context>tctttcacar[A/G]aagttagata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAA</left_flank>
        <right_flank>AAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTACTCGAGTTTAAAGTAACATATATGTAGAGTGGAATTCTAGAGCATTAACCATAATATTGAATTTTCAAAGCCAGCTTACCTCTACCGGAGAAGCCTGTGGACCGCAAACAGGTTGCTCCTGAATTCGATTTTCAGAAACGTTGACTCCTTCAGAAGAACAAGATGCGGTCATAGCTTTGACAAACTGCTCTACCACGTTCAACGCATTTAATGCATTCTCATTTCTGAAGCTAGATGGAGTCGTCAAAAAGAAGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGTTCCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTTGCATACCACATAAAGAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTATTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATTTCCTGGTAACTTAATTCAAATGGCTAAGAATCTTTATTGGGAACTTTTTTGTCAGGTTTTCTCAAGAATAGATTTACCTTTCACTTTTTTTCCAACTTTCCCATAAGATAAGTTATTTGTTTTTTGAAAGTAGGCCAGAAAAGGTATTGATTATCCGAATGAAGGGATTTCAAACGTTTTAGCAAAATCCAGACATCCTACGAAACTCATAGAA</canonical>
            <polymorphic>GGTACTCGAGTTTAAAGTAACATATATGTAGAGTGGAATTCTAGAGCATTAACCATAATATTGAATTTTCAAAGCCAGCTTACCTCTACCGGAGAAGCCTGTGGACCGCAAACAGGTTGCTCCTGAATTCGATTTTCAGAAACGTTGACTCCTTCAGAAGAACAAGATGCGGTCATAGCTTTGACAAACTGCTCTACCACGTTCAACGCATTTAATGCATTCTCATTTCTGAAGCTAGATGGAGTCGTCAAAAAGAAGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGTTCCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAARAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTTGCATACCACATAAAGAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTATTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATTTCCTGGTAACTTAATTCAAATGGCTAAGAATCTTTATTGGGAACTTTTTTGTCAGGTTTTCTCAAGAATAGATTTACCTTTCACTTTTTTTCCAACTTTCCCATAAGATAAGTTATTTGTTTTTTGAAAGTAGGCCAGAAAAGGTATTGATTATCCGAATGAAGGGATTTCAAACGTTTTAGCAAAATCCAGACATCCTACGAAACTCATAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTGTATATTCATTGCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>CAGCACAAGAATAGAACAAGAGT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTG</canonical_amplicon>
		<polymorphic_amplicon>TGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAARAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30057</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>576076</contig_pos>
        <strand></strand>
        <context>tcgaagttga[A/C]ggktTTGGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGA</left_flank>
        <right_flank>GGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAGTGGAATTCTAGAGCATTAACCATAATATTGAATTTTCAAAGCCAGCTTACCTCTACCGGAGAAGCCTGTGGACCGCAAACAGGTTGCTCCTGAATTCGATTTTCAGAAACGTTGACTCCTTCAGAAGAACAAGATGCGGTCATAGCTTTGACAAACTGCTCTACCACGTTCAACGCATTTAATGCATTCTCATTTCTGAAGCTAGATGGAGTCGTCAAAAAGAAGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGTTCCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTTGCATACCACATAAAGAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTATTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATTTCCTGGTAACTTAATTCAAATGGCTAAGAATCTTTATTGGGAACTTTTTTGTCAGGTTTTCTCAAGAATAGATTTACCTTTCACTTTTTTTCCAACTTTCCCATAAGATAAGTTATTTGTTTTTTGAAAGTAGGCCAGAAAAGGTATTGATTATCCGAATGAAGGGATTTCAAACGTTTTAGCAAAATCCAGACATCCTACGAAACTCATAGAAAGCAGAACATTTATCTTTTTCTCTTACA</canonical>
            <polymorphic>TAGAGTGGAATTCTAGAGCATTAACCATAATATTGAATTTTCAAAGCCAGCTTACCTCTACCGGAGAAGCCTGTGGACCGCAAACAGGTTGCTCCTGAATTCGATTTTCAGAAACGTTGACTCCTTCAGAAGAACAAGATGCGGTCATAGCTTTGACAAACTGCTCTACCACGTTCAACGCATTTAATGCATTCTCATTTCTGAAGCTAGATGGAGTCGTCAAAAAGAAGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGTTCCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAMGGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTTGCATACCACATAAAGAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTATTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATTTCCTGGTAACTTAATTCAAATGGCTAAGAATCTTTATTGGGAACTTTTTTGTCAGGTTTTCTCAAGAATAGATTTACCTTTCACTTTTTTTCCAACTTTCCCATAAGATAAGTTATTTGTTTTTTGAAAGTAGGCCAGAAAAGGTATTGATTATCCGAATGAAGGGATTTCAAACGTTTTAGCAAAATCCAGACATCCTACGAAACTCATAGAAAGCAGAACATTTATCTTTTTCTCTTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTGCTGAAAAATAATGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAATACCGAGAAGCTGTTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTT</canonical_amplicon>
		<polymorphic_amplicon>CATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAMGGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30058</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>576079</contig_pos>
        <strand>+</strand>
        <context>aagttgamgg[G/T]tTTGGTTCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAAGG</left_flank>
        <right_flank>TTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGGAATTCTAGAGCATTAACCATAATATTGAATTTTCAAAGCCAGCTTACCTCTACCGGAGAAGCCTGTGGACCGCAAACAGGTTGCTCCTGAATTCGATTTTCAGAAACGTTGACTCCTTCAGAAGAACAAGATGCGGTCATAGCTTTGACAAACTGCTCTACCACGTTCAACGCATTTAATGCATTCTCATTTCTGAAGCTAGATGGAGTCGTCAAAAAGAAGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGTTCCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTTGCATACCACATAAAGAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTATTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATTTCCTGGTAACTTAATTCAAATGGCTAAGAATCTTTATTGGGAACTTTTTTGTCAGGTTTTCTCAAGAATAGATTTACCTTTCACTTTTTTTCCAACTTTCCCATAAGATAAGTTATTTGTTTTTTGAAAGTAGGCCAGAAAAGGTATTGATTATCCGAATGAAGGGATTTCAAACGTTTTAGCAAAATCCAGACATCCTACGAAACTCATAGAAAGCAGAACATTTATCTTTTTCTCTTACATTC</canonical>
            <polymorphic>AGTGGAATTCTAGAGCATTAACCATAATATTGAATTTTCAAAGCCAGCTTACCTCTACCGGAGAAGCCTGTGGACCGCAAACAGGTTGCTCCTGAATTCGATTTTCAGAAACGTTGACTCCTTCAGAAGAACAAGATGCGGTCATAGCTTTGACAAACTGCTCTACCACGTTCAACGCATTTAATGCATTCTCATTTCTGAAGCTAGATGGAGTCGTCAAAAAGAAGTTTGGCTCTTGTGAGATTAGGCTATCGACTCTGTGATGTTCCCGTGGTCGTTTAATTGGTGCTGTATATGCTGTATATTCATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAAGGKTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTTGCATACCACATAAAGAGAGATTTGGTGCCTAAATCGTTCTGAAAATGTTCATTTCTGAATCGCAAGTCGAACTGAAAAAACGATTGAAAACATATATGCTTGTAAATTCGATGAAACCGAAACTTTTGCTAAGAGAAGAAAAGGAAAATCTATTTGTTTTCTAAACATCTTTTTTCTAGTTTAAAAAAATTTGGATTTCCTGGTAACTTAATTCAAATGGCTAAGAATCTTTATTGGGAACTTTTTTGTCAGGTTTTCTCAAGAATAGATTTACCTTTCACTTTTTTTCCAACTTTCCCATAAGATAAGTTATTTGTTTTTTGAAAGTAGGCCAGAAAAGGTATTGATTATCCGAATGAAGGGATTTCAAACGTTTTAGCAAAATCCAGACATCCTACGAAACTCATAGAAAGCAGAACATTTATCTTTTTCTCTTACATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTGCTGAAAAATAATGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAATACCGAGAAGCTGTTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAAGGTTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTT</canonical_amplicon>
		<polymorphic_amplicon>CATTGCTGAAAAATAATGAAAATTAAAATGAGATTTAGATAAATTTTGAGCCAATTTTTTCTCGTTTTCTGTGAAAGATATAAGAAAGTGGTCAACCAACAAAATATCGTTTATATTATAATTAACATTCTATCAGTTGATCACTTTTTATATCTTTCACAAAAAGTTAGATATATGAGCTCGAAGTTGAAGGKTTTGGTTCCTTACTCTTGTTCTATTCTTGTGCTGCTTGCAACAGCTTCTCGGTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30059</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>633450</contig_pos>
        <strand></strand>
        <context>AAAATTAAGG[A/G]AAAARGTAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCAAAAAAATCAAATCACAAATCAAGCCGCAAAAGATTAAAAATTAAGG</left_flank>
        <right_flank>AAAAAGTAGGTCACAAGGCAACAGATTTTCCTCTGGTGTTGCCTGGGGTG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAAAAAGTTGAAAAACGGCAATTTTCTGCTAAATTCTGGGCCTAAAATTTGAGAAAATTCGAAAAAATCGGCGCATCTTTTTGAATTTGATGCAAACGCGCTCTATCGCACCAAGGCGAGAAAATCGATTTTTTCGAATAAAACCGAGGGAATTCGGTTGTTTCAGGTCAAAATCTTGTTTCACATAATTTCCGGTCTAATTTTTGTAAAAACTTTGATTTATGAGGTTAAAAAGAAGCTTTTAAAAGTATAAAAAGCAGTTTCAAAAGTGAAAGGTGACGAAAAATCGCTGAAAACGGCGGATTTAAATTTTTGCCAAAAAAATCAGGAAAGTCTGTATTTTTGTAAATTTTAAAGGTTAAATCGGTTTTTAAGCTCGTTTCAGTGTAATTAAATGTTATTTGCTCATAAAAATAGGCTAAAGAATAGCCAAAAACGACTCAATCTCTCAAAAAAATCAAATCACAAATCAAGCCGCAAAAGATTAAAAATTAAGGAAAAAAGTAGGTCACAAGGCAACAGATTTTCCTCTGGTGTTGCCTGGGGTGAAGAACGTGGGTATATGCGGTGTGGTGGGTGAGAAAAACGAAGGCTGAAGAAAAGCAGGGGGGATTGTTCGAAACGAAGAAAGGGGGGCGTAAATAGTGTATGAAAAAGAGAAGCTACAAAGAAAACGAAGGAGGTTTCTTTCTTTCAAACACACTCCGGTTGCCTTACATCAAATGTTTGAATCGATACACTTCTTTTTTATTCTTCTTCCCAAAAGATCTGATTGATAATACGTACTTTACACCTTCCACTTATCATTACGGCATTTATAACAAGTGCAGCATATAAATATAAATGAATATCACAATTTTTACAAATACAATTTTCGGAATAATACTCTTTAGAAAGATGTCGTATTAATAATGAAGTAGCGTTGCTCGTGCGACTTCAGCGATTTCAGAAGCTTCTCGACGACTTGGAATGAGACGGCGGCAGTGACAAATGGACCA</canonical>
            <polymorphic>GAGAAAAAGTTGAAAAACGGCAATTTTCTGCTAAATTCTGGGCCTAAAATTTGAGAAAATTCGAAAAAATCGGCGCATCTTTTTGAATTTGATGCAAACGCGCTCTATCGCACCAAGGCGAGAAAATCGATTTTTTCGAATAAAACCGAGGGAATTCGGTTGTTTCAGGTCAAAATCTTGTTTCACATAATTTCCGGTCTAATTTTTGTAAAAACTTTGATTTATGAGGTTAAAAAGAAGCTTTTAAAAGTATAAAAAGCAGTTTCAAAAGTGAAAGGTGACGAAAAATCGCTGAAAACGGCGGATTTAAATTTTTGCCAAAAAAATCAGGAAAGTCTGTATTTTTGTAAATTTTAAAGGTTAAATCGGTTTTTAAGCTCGTTTCAGTGTAATTAAATGTTATTTGCTCATAAAAATAGGCTAAAGAATAGCCAAAAACGACTCAATCTCTCAAAAAAATCAAATCACAAATCAAGCCGCAAAAGATTAAAAATTAAGGRAAAAAGTAGGTCACAAGGCAACAGATTTTCCTCTGGTGTTGCCTGGGGTGAAGAACGTGGGTATATGCGGTGTGGTGGGTGAGAAAAACGAAGGCTGAAGAAAAGCAGGGGGGATTGTTCGAAACGAAGAAAGGGGGGCGTAAATAGTGTATGAAAAAGAGAAGCTACAAAGAAAACGAAGGAGGTTTCTTTCTTTCAAACACACTCCGGTTGCCTTACATCAAATGTTTGAATCGATACACTTCTTTTTTATTCTTCTTCCCAAAAGATCTGATTGATAATACGTACTTTACACCTTCCACTTATCATTACGGCATTTATAACAAGTGCAGCATATAAATATAAATGAATATCACAATTTTTACAAATACAATTTTCGGAATAATACTCTTTAGAAAGATGTCGTATTAATAATGAAGTAGCGTTGCTCGTGCGACTTCAGCGATTTCAGAAGCTTCTCGACGACTTGGAATGAGACGGCGGCAGTGACAAATGGACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAAAGAATAGCCAAAAACGAC</pcr_primer_p1>
		<pcr_primer_p2>TTGTAGCTTCTCTTTTTCATACAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAAAGAATAGCCAAAAACGACTCAATCTCTCAAAAAAATCAAATCACAAATCAAGCCGCAAAAGATTAAAAATTAAGGAAAAAAGTAGGTCACAAGGCAACAGATTTTCCTCTGGTGTTGCCTGGGGTGAAGAACGTGGGTATATGCGGTGTGGTGGGTGAGAAAAACGAAGGCTGAAGAAAAGCAGGGGGGATTGTTCGAAACGAAGAAAGGGGGGCGTAAATAGTGTATGAAAAAGAGAAGCTACAA</canonical_amplicon>
		<polymorphic_amplicon>CTAAAGAATAGCCAAAAACGACTCAATCTCTCAAAAAAATCAAATCACAAATCAAGCCGCAAAAGATTAAAAATTAAGGRAAAAAGTAGGTCACAAGGCAACAGATTTTCCTCTGGTGTTGCCTGGGGTGAAGAACGTGGGTATATGCGGTGTGGTGGGTGAGAAAAACGAAGGCTGAAGAAAAGCAGGGGGGATTGTTCGAAACGAAGAAAGGGGGGCGTAAATAGTGTATGAAAAAGAGAAGCTACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30060</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>633455</contig_pos>
        <strand>+</strand>
        <context>TAAGGRAAAA[A/G]GTAGGTCACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAATCAAATCACAAATCAAGCCGCAAAAGATTAAAAATTAAGGAAAAA</left_flank>
        <right_flank>GTAGGTCACAAGGCAACAGATTTTCCTCTGGTGTTGCCTGGGGTGAAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTTGAAAAACGGCAATTTTCTGCTAAATTCTGGGCCTAAAATTTGAGAAAATTCGAAAAAATCGGCGCATCTTTTTGAATTTGATGCAAACGCGCTCTATCGCACCAAGGCGAGAAAATCGATTTTTTCGAATAAAACCGAGGGAATTCGGTTGTTTCAGGTCAAAATCTTGTTTCACATAATTTCCGGTCTAATTTTTGTAAAAACTTTGATTTATGAGGTTAAAAAGAAGCTTTTAAAAGTATAAAAAGCAGTTTCAAAAGTGAAAGGTGACGAAAAATCGCTGAAAACGGCGGATTTAAATTTTTGCCAAAAAAATCAGGAAAGTCTGTATTTTTGTAAATTTTAAAGGTTAAATCGGTTTTTAAGCTCGTTTCAGTGTAATTAAATGTTATTTGCTCATAAAAATAGGCTAAAGAATAGCCAAAAACGACTCAATCTCTCAAAAAAATCAAATCACAAATCAAGCCGCAAAAGATTAAAAATTAAGGAAAAAAGTAGGTCACAAGGCAACAGATTTTCCTCTGGTGTTGCCTGGGGTGAAGAACGTGGGTATATGCGGTGTGGTGGGTGAGAAAAACGAAGGCTGAAGAAAAGCAGGGGGGATTGTTCGAAACGAAGAAAGGGGGGCGTAAATAGTGTATGAAAAAGAGAAGCTACAAAGAAAACGAAGGAGGTTTCTTTCTTTCAAACACACTCCGGTTGCCTTACATCAAATGTTTGAATCGATACACTTCTTTTTTATTCTTCTTCCCAAAAGATCTGATTGATAATACGTACTTTACACCTTCCACTTATCATTACGGCATTTATAACAAGTGCAGCATATAAATATAAATGAATATCACAATTTTTACAAATACAATTTTCGGAATAATACTCTTTAGAAAGATGTCGTATTAATAATGAAGTAGCGTTGCTCGTGCGACTTCAGCGATTTCAGAAGCTTCTCGACGACTTGGAATGAGACGGCGGCAGTGACAAATGGACCAAAGAT</canonical>
            <polymorphic>AAAGTTGAAAAACGGCAATTTTCTGCTAAATTCTGGGCCTAAAATTTGAGAAAATTCGAAAAAATCGGCGCATCTTTTTGAATTTGATGCAAACGCGCTCTATCGCACCAAGGCGAGAAAATCGATTTTTTCGAATAAAACCGAGGGAATTCGGTTGTTTCAGGTCAAAATCTTGTTTCACATAATTTCCGGTCTAATTTTTGTAAAAACTTTGATTTATGAGGTTAAAAAGAAGCTTTTAAAAGTATAAAAAGCAGTTTCAAAAGTGAAAGGTGACGAAAAATCGCTGAAAACGGCGGATTTAAATTTTTGCCAAAAAAATCAGGAAAGTCTGTATTTTTGTAAATTTTAAAGGTTAAATCGGTTTTTAAGCTCGTTTCAGTGTAATTAAATGTTATTTGCTCATAAAAATAGGCTAAAGAATAGCCAAAAACGACTCAATCTCTCAAAAAAATCAAATCACAAATCAAGCCGCAAAAGATTAAAAATTAAGGAAAAARGTAGGTCACAAGGCAACAGATTTTCCTCTGGTGTTGCCTGGGGTGAAGAACGTGGGTATATGCGGTGTGGTGGGTGAGAAAAACGAAGGCTGAAGAAAAGCAGGGGGGATTGTTCGAAACGAAGAAAGGGGGGCGTAAATAGTGTATGAAAAAGAGAAGCTACAAAGAAAACGAAGGAGGTTTCTTTCTTTCAAACACACTCCGGTTGCCTTACATCAAATGTTTGAATCGATACACTTCTTTTTTATTCTTCTTCCCAAAAGATCTGATTGATAATACGTACTTTACACCTTCCACTTATCATTACGGCATTTATAACAAGTGCAGCATATAAATATAAATGAATATCACAATTTTTACAAATACAATTTTCGGAATAATACTCTTTAGAAAGATGTCGTATTAATAATGAAGTAGCGTTGCTCGTGCGACTTCAGCGATTTCAGAAGCTTCTCGACGACTTGGAATGAGACGGCGGCAGTGACAAATGGACCAAAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAAAGAATAGCCAAAAACGAC</pcr_primer_p1>
		<pcr_primer_p2>TTGTAGCTTCTCTTTTTCATACAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAAAGAATAGCCAAAAACGACTCAATCTCTCAAAAAAATCAAATCACAAATCAAGCCGCAAAAGATTAAAAATTAAGGAAAAAAGTAGGTCACAAGGCAACAGATTTTCCTCTGGTGTTGCCTGGGGTGAAGAACGTGGGTATATGCGGTGTGGTGGGTGAGAAAAACGAAGGCTGAAGAAAAGCAGGGGGGATTGTTCGAAACGAAGAAAGGGGGGCGTAAATAGTGTATGAAAAAGAGAAGCTACAA</canonical_amplicon>
		<polymorphic_amplicon>CTAAAGAATAGCCAAAAACGACTCAATCTCTCAAAAAAATCAAATCACAAATCAAGCCGCAAAAGATTAAAAATTAAGGAAAAARGTAGGTCACAAGGCAACAGATTTTCCTCTGGTGTTGCCTGGGGTGAAGAACGTGGGTATATGCGGTGTGGTGGGTGAGAAAAACGAAGGCTGAAGAAAAGCAGGGGGGATTGTTCGAAACGAAGAAAGGGGGGCGTAAATAGTGTATGAAAAAGAGAAGCTACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30061</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>633719</contig_pos>
        <strand>+</strand>
        <context>TTCCCAAAAG[A/G]TCTGATTGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATCAAATGTTTGAATCGATACACTTCTTTTTTATTCTTCTTCCCAAAAG</left_flank>
        <right_flank>TCTGATTGATAATACGTACTTTACACCTTCCACTTATCATTACGGCATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTGAAAGGTGACGAAAAATCGCTGAAAACGGCGGATTTAAATTTTTGCCAAAAAAATCAGGAAAGTCTGTATTTTTGTAAATTTTAAAGGTTAAATCGGTTTTTAAGCTCGTTTCAGTGTAATTAAATGTTATTTGCTCATAAAAATAGGCTAAAGAATAGCCAAAAACGACTCAATCTCTCAAAAAAATCAAATCACAAATCAAGCCGCAAAAGATTAAAAATTAAGGAAAAAAGTAGGTCACAAGGCAACAGATTTTCCTCTGGTGTTGCCTGGGGTGAAGAACGTGGGTATATGCGGTGTGGTGGGTGAGAAAAACGAAGGCTGAAGAAAAGCAGGGGGGATTGTTCGAAACGAAGAAAGGGGGGCGTAAATAGTGTATGAAAAAGAGAAGCTACAAAGAAAACGAAGGAGGTTTCTTTCTTTCAAACACACTCCGGTTGCCTTACATCAAATGTTTGAATCGATACACTTCTTTTTTATTCTTCTTCCCAAAAGATCTGATTGATAATACGTACTTTACACCTTCCACTTATCATTACGGCATTTATAACAAGTGCAGCATATAAATATAAATGAATATCACAATTTTTACAAATACAATTTTCGGAATAATACTCTTTAGAAAGATGTCGTATTAATAATGAAGTAGCGTTGCTCGTGCGACTTCAGCGATTTCAGAAGCTTCTCGACGACTTGGAATGAGACGGCGGCAGTGACAAATGGACCAAAGATGCAGTATAACGAGAAGAGATCCGTCACCCAAACGAAGAGACAGTGCTTTGTGCCACGAACGAAAAGGGTTCGGAGGTGAGGATGACGTGTGGATAGAGCAGAAGAACGTCGCATTTCACAGCGAGCCATCCATCGTTCGGTTCGAGTGATAAGGGGGATTCTGGAAAAACGGGAATTTAAAAGGGGAATATCGACCGGATATTATATTCTAATACATCAAAAAATGTAAGAAAAATATGCACATTCATATAGCAACAACAAAAT</canonical>
            <polymorphic>AGTGAAAGGTGACGAAAAATCGCTGAAAACGGCGGATTTAAATTTTTGCCAAAAAAATCAGGAAAGTCTGTATTTTTGTAAATTTTAAAGGTTAAATCGGTTTTTAAGCTCGTTTCAGTGTAATTAAATGTTATTTGCTCATAAAAATAGGCTAAAGAATAGCCAAAAACGACTCAATCTCTCAAAAAAATCAAATCACAAATCAAGCCGCAAAAGATTAAAAATTAAGGAAAAAAGTAGGTCACAAGGCAACAGATTTTCCTCTGGTGTTGCCTGGGGTGAAGAACGTGGGTATATGCGGTGTGGTGGGTGAGAAAAACGAAGGCTGAAGAAAAGCAGGGGGGATTGTTCGAAACGAAGAAAGGGGGGCGTAAATAGTGTATGAAAAAGAGAAGCTACAAAGAAAACGAAGGAGGTTTCTTTCTTTCAAACACACTCCGGTTGCCTTACATCAAATGTTTGAATCGATACACTTCTTTTTTATTCTTCTTCCCAAAAGRTCTGATTGATAATACGTACTTTACACCTTCCACTTATCATTACGGCATTTATAACAAGTGCAGCATATAAATATAAATGAATATCACAATTTTTACAAATACAATTTTCGGAATAATACTCTTTAGAAAGATGTCGTATTAATAATGAAGTAGCGTTGCTCGTGCGACTTCAGCGATTTCAGAAGCTTCTCGACGACTTGGAATGAGACGGCGGCAGTGACAAATGGACCAAAGATGCAGTATAACGAGAAGAGATCCGTCACCCAAACGAAGAGACAGTGCTTTGTGCCACGAACGAAAAGGGTTCGGAGGTGAGGATGACGTGTGGATAGAGCAGAAGAACGTCGCATTTCACAGCGAGCCATCCATCGTTCGGTTCGAGTGATAAGGGGGATTCTGGAAAAACGGGAATTTAAAAGGGGAATATCGACCGGATATTATATTCTAATACATCAAAAAATGTAAGAAAAATATGCACATTCATATAGCAACAACAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>498 255 247</canonical_bands>
                <polymorphic_bands>753 247</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>498 255 247</canonical_bands>
                <polymorphic_bands>753 247</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCGTAAATAGTGTATGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTATTCCGAAAATTGTATTTGTAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGCGTAAATAGTGTATGAAAAAGAGAAGCTACAAAGAAAACGAAGGAGGTTTCTTTCTTTCAAACACACTCCGGTTGCCTTACATCAAATGTTTGAATCGATACACTTCTTTTTTATTCTTCTTCCCAAAAGATCTGATTGATAATACGTACTTTACACCTTCCACTTATCATTACGGCATTTATAACAAGTGCAGCATATAAATATAAATGAATATCACAATTTTTACAAATACAATTTTCGGAATAA</canonical_amplicon>
		<polymorphic_amplicon>GGCGTAAATAGTGTATGAAAAAGAGAAGCTACAAAGAAAACGAAGGAGGTTTCTTTCTTTCAAACACACTCCGGTTGCCTTACATCAAATGTTTGAATCGATACACTTCTTTTTTATTCTTCTTCCCAAAAGRTCTGATTGATAATACGTACTTTACACCTTCCACTTATCATTACGGCATTTATAACAAGTGCAGCATATAAATATAAATGAATATCACAATTTTTACAAATACAATTTTCGGAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30062</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>633796</contig_pos>
        <strand>+</strand>
        <context>ATAAATATAA[A/T]TGAATATCAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTCCACTTATCATTACGGCATTTATAACAAGTGCAGCATATAAATATAA</left_flank>
        <right_flank>TGAATATCACAATTTTTACAAATACAATTTTCGGAATAATACTCTTTAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAAATTTTAAAGGTTAAATCGGTTTTTAAGCTCGTTTCAGTGTAATTAAATGTTATTTGCTCATAAAAATAGGCTAAAGAATAGCCAAAAACGACTCAATCTCTCAAAAAAATCAAATCACAAATCAAGCCGCAAAAGATTAAAAATTAAGGAAAAAAGTAGGTCACAAGGCAACAGATTTTCCTCTGGTGTTGCCTGGGGTGAAGAACGTGGGTATATGCGGTGTGGTGGGTGAGAAAAACGAAGGCTGAAGAAAAGCAGGGGGGATTGTTCGAAACGAAGAAAGGGGGGCGTAAATAGTGTATGAAAAAGAGAAGCTACAAAGAAAACGAAGGAGGTTTCTTTCTTTCAAACACACTCCGGTTGCCTTACATCAAATGTTTGAATCGATACACTTCTTTTTTATTCTTCTTCCCAAAAGATCTGATTGATAATACGTACTTTACACCTTCCACTTATCATTACGGCATTTATAACAAGTGCAGCATATAAATATAAATGAATATCACAATTTTTACAAATACAATTTTCGGAATAATACTCTTTAGAAAGATGTCGTATTAATAATGAAGTAGCGTTGCTCGTGCGACTTCAGCGATTTCAGAAGCTTCTCGACGACTTGGAATGAGACGGCGGCAGTGACAAATGGACCAAAGATGCAGTATAACGAGAAGAGATCCGTCACCCAAACGAAGAGACAGTGCTTTGTGCCACGAACGAAAAGGGTTCGGAGGTGAGGATGACGTGTGGATAGAGCAGAAGAACGTCGCATTTCACAGCGAGCCATCCATCGTTCGGTTCGAGTGATAAGGGGGATTCTGGAAAAACGGGAATTTAAAAGGGGAATATCGACCGGATATTATATTCTAATACATCAAAAAATGTAAGAAAAATATGCACATTCATATAGCAACAACAAAATATTGAAAATTTCGAAAAATCGCTTCGAAAAATGAAAAATCTCAAAGCGGCTTTTTGCGATTTTTCAGAAAAAAAAAT</canonical>
            <polymorphic>GTAAATTTTAAAGGTTAAATCGGTTTTTAAGCTCGTTTCAGTGTAATTAAATGTTATTTGCTCATAAAAATAGGCTAAAGAATAGCCAAAAACGACTCAATCTCTCAAAAAAATCAAATCACAAATCAAGCCGCAAAAGATTAAAAATTAAGGAAAAAAGTAGGTCACAAGGCAACAGATTTTCCTCTGGTGTTGCCTGGGGTGAAGAACGTGGGTATATGCGGTGTGGTGGGTGAGAAAAACGAAGGCTGAAGAAAAGCAGGGGGGATTGTTCGAAACGAAGAAAGGGGGGCGTAAATAGTGTATGAAAAAGAGAAGCTACAAAGAAAACGAAGGAGGTTTCTTTCTTTCAAACACACTCCGGTTGCCTTACATCAAATGTTTGAATCGATACACTTCTTTTTTATTCTTCTTCCCAAAAGATCTGATTGATAATACGTACTTTACACCTTCCACTTATCATTACGGCATTTATAACAAGTGCAGCATATAAATATAAWTGAATATCACAATTTTTACAAATACAATTTTCGGAATAATACTCTTTAGAAAGATGTCGTATTAATAATGAAGTAGCGTTGCTCGTGCGACTTCAGCGATTTCAGAAGCTTCTCGACGACTTGGAATGAGACGGCGGCAGTGACAAATGGACCAAAGATGCAGTATAACGAGAAGAGATCCGTCACCCAAACGAAGAGACAGTGCTTTGTGCCACGAACGAAAAGGGTTCGGAGGTGAGGATGACGTGTGGATAGAGCAGAAGAACGTCGCATTTCACAGCGAGCCATCCATCGTTCGGTTCGAGTGATAAGGGGGATTCTGGAAAAACGGGAATTTAAAAGGGGAATATCGACCGGATATTATATTCTAATACATCAAAAAATGTAAGAAAAATATGCACATTCATATAGCAACAACAAAATATTGAAAATTTCGAAAAATCGCTTCGAAAAATGAAAAATCTCAAAGCGGCTTTTTGCGATTTTTCAGAAAAAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACGTACTTTACACCTTCCACTT</pcr_primer_p1>
		<pcr_primer_p2>GACGGATCTCTTCTCGTTATACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TACGTACTTTACACCTTCCACTTATCATTACGGCATTTATAACAAGTGCAGCATATAAATATAAATGAATATCACAATTTTTACAAATACAATTTTCGGAATAATACTCTTTAGAAAGATGTCGTATTAATAATGAAGTAGCGTTGCTCGTGCGACTTCAGCGATTTCAGAAGCTTCTCGACGACTTGGAATGAGACGGCGGCAGTGACAAATGGACCAAAGATGCAGTATAACGAGAAGAGATCCGTC</canonical_amplicon>
		<polymorphic_amplicon>TACGTACTTTACACCTTCCACTTATCATTACGGCATTTATAACAAGTGCAGCATATAAATATAAWTGAATATCACAATTTTTACAAATACAATTTTCGGAATAATACTCTTTAGAAAGATGTCGTATTAATAATGAAGTAGCGTTGCTCGTGCGACTTCAGCGATTTCAGAAGCTTCTCGACGACTTGGAATGAGACGGCGGCAGTGACAAATGGACCAAAGATGCAGTATAACGAGAAGAGATCCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30063</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>635077</contig_pos>
        <strand>+</strand>
        <context>ACCAGGGATA[C/T]GAAATGTAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCAGCACTAGACACGCTGGAATGTCTTGATCTTTGTTGCACCAGGGATA</left_flank>
        <right_flank>GAAATGTAGGCGTAGAAGAAGCCGGTGTCATTGAAACGTGGCAAACAGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATTTCAGACAAAACACCGGAACAATCGAAAAACAATCTTTGAAAATAGCTAAAAAGCCGAAAGAGGTCTAAAAATTTGCAAAATAATCGAGGAAAAATCGCAGAAACCCCGAAACTGCGATTTTTTCGCTTTTTGAAGCGATTTTTCGAAATTTTTCTTCGTTGCTGAATCTACATATTTTTCTACACAGAGTGTTCGGTCGAAGTTCCCTTTTATGGAAAAAAACTCACTTCGAAGCGGACATACAAACTTGTCTCGACGAGTGATTCAAGTATAAAAACGACCAAAGTGATTCAGAATTCGATCCGATTTGTGAGATCTGATACAGATTCGGCGTCTTCACAGCTTGACTGAAATTGGTGAAGAATTTCGCATTGTTCTCCAATTTTGTGACAATTTGTTGTCTGACTTCTTTCAACCCATCGAAATGATCTCGTTTCACAGAAAGCAGCACTAGACACGCTGGAATGTCTTGATCTTTGTTGCACCAGGGATACGAAATGTAGGCGTAGAAGAAGCCGGTGTCATTGAAACGTGGCAAACAGATGGGCACCCAGTTTTGAGAATCCGTTTTGAGAGTGGTGTCGGAGACGAGATTGATGAGAATGTTCAAGTCGCGAGGATGGATTACGTATTTCTGGAAAAAATTTGCAAAAAATTATTGAAAAATTTTTTTTTCGATTTTTTAAATAAATTTCATGATTTTCGAATTTTTCATATGAAAAACCGCAAAAAATCGCAATACAATGAAACTTATTGGAAAATCGACAAAATTCATCGGAAAATTGAAAAAAATTGCTCTACAGTACTTCAACGGCACAGCATGGAAAAAATGAACAATCGCTGTGAGACACTTTCAAGTTATCGATGCTGCGCCTTTGAGGATTACGGTAGTTAAAATGCATTTTCTGGCCTAATTTTTCGATGTTTCGTAGATTTTCGACTTTTTTTTTAACAGAAATCTGGAAAATTTACAAAAAAAATCACATAAAGACAA</canonical>
            <polymorphic>CAAATTTCAGACAAAACACCGGAACAATCGAAAAACAATCTTTGAAAATAGCTAAAAAGCCGAAAGAGGTCTAAAAATTTGCAAAATAATCGAGGAAAAATCGCAGAAACCCCGAAACTGCGATTTTTTCGCTTTTTGAAGCGATTTTTCGAAATTTTTCTTCGTTGCTGAATCTACATATTTTTCTACACAGAGTGTTCGGTCGAAGTTCCCTTTTATGGAAAAAAACTCACTTCGAAGCGGACATACAAACTTGTCTCGACGAGTGATTCAAGTATAAAAACGACCAAAGTGATTCAGAATTCGATCCGATTTGTGAGATCTGATACAGATTCGGCGTCTTCACAGCTTGACTGAAATTGGTGAAGAATTTCGCATTGTTCTCCAATTTTGTGACAATTTGTTGTCTGACTTCTTTCAACCCATCGAAATGATCTCGTTTCACAGAAAGCAGCACTAGACACGCTGGAATGTCTTGATCTTTGTTGCACCAGGGATAYGAAATGTAGGCGTAGAAGAAGCCGGTGTCATTGAAACGTGGCAAACAGATGGGCACCCAGTTTTGAGAATCCGTTTTGAGAGTGGTGTCGGAGACGAGATTGATGAGAATGTTCAAGTCGCGAGGATGGATTACGTATTTCTGGAAAAAATTTGCAAAAAATTATTGAAAAATTTTTTTTTCGATTTTTTAAATAAATTTCATGATTTTCGAATTTTTCATATGAAAAACCGCAAAAAATCGCAATACAATGAAACTTATTGGAAAATCGACAAAATTCATCGGAAAATTGAAAAAAATTGCTCTACAGTACTTCAACGGCACAGCATGGAAAAAATGAACAATCGCTGTGAGACACTTTCAAGTTATCGATGCTGCGCCTTTGAGGATTACGGTAGTTAAAATGCATTTTCTGGCCTAATTTTTCGATGTTTCGTAGATTTTCGACTTTTTTTTTAACAGAAATCTGGAAAATTTACAAAAAAAATCACATAAAGACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAATTTGTTGTCTGACTTCTT</pcr_primer_p1>
		<pcr_primer_p2>CAGAAATACGTAATCCATCCTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GACAATTTGTTGTCTGACTTCTTTCAACCCATCGAAATGATCTCGTTTCACAGAAAGCAGCACTAGACACGCTGGAATGTCTTGATCTTTGTTGCACCAGGGATACGAAATGTAGGCGTAGAAGAAGCCGGTGTCATTGAAACGTGGCAAACAGATGGGCACCCAGTTTTGAGAATCCGTTTTGAGAGTGGTGTCGGAGACGAGATTGATGAGAATGTTCAAGTCGCGAGGATGGATTACGTATTTCTG</canonical_amplicon>
		<polymorphic_amplicon>GACAATTTGTTGTCTGACTTCTTTCAACCCATCGAAATGATCTCGTTTCACAGAAAGCAGCACTAGACACGCTGGAATGTCTTGATCTTTGTTGCACCAGGGATAYGAAATGTAGGCGTAGAAGAAGCCGGTGTCATTGAAACGTGGCAAACAGATGGGCACCCAGTTTTGAGAATCCGTTTTGAGAGTGGTGTCGGAGACGAGATTGATGAGAATGTTCAAGTCGCGAGGATGGATTACGTATTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30064</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>635177</contig_pos>
        <strand>+</strand>
        <context>GGAGACGAGA[A/T]TGATGAGAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGGGCACCCAGTTTTGAGAATCCGTTTTGAGAGTGGTGTCGGAGACGAGA</left_flank>
        <right_flank>TGATGAGAATGTTCAAGTCGCGAGGATGGATTACGTATTTCTGGAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGCAGAAACCCCGAAACTGCGATTTTTTCGCTTTTTGAAGCGATTTTTCGAAATTTTTCTTCGTTGCTGAATCTACATATTTTTCTACACAGAGTGTTCGGTCGAAGTTCCCTTTTATGGAAAAAAACTCACTTCGAAGCGGACATACAAACTTGTCTCGACGAGTGATTCAAGTATAAAAACGACCAAAGTGATTCAGAATTCGATCCGATTTGTGAGATCTGATACAGATTCGGCGTCTTCACAGCTTGACTGAAATTGGTGAAGAATTTCGCATTGTTCTCCAATTTTGTGACAATTTGTTGTCTGACTTCTTTCAACCCATCGAAATGATCTCGTTTCACAGAAAGCAGCACTAGACACGCTGGAATGTCTTGATCTTTGTTGCACCAGGGATACGAAATGTAGGCGTAGAAGAAGCCGGTGTCATTGAAACGTGGCAAACAGATGGGCACCCAGTTTTGAGAATCCGTTTTGAGAGTGGTGTCGGAGACGAGATTGATGAGAATGTTCAAGTCGCGAGGATGGATTACGTATTTCTGGAAAAAATTTGCAAAAAATTATTGAAAAATTTTTTTTTCGATTTTTTAAATAAATTTCATGATTTTCGAATTTTTCATATGAAAAACCGCAAAAAATCGCAATACAATGAAACTTATTGGAAAATCGACAAAATTCATCGGAAAATTGAAAAAAATTGCTCTACAGTACTTCAACGGCACAGCATGGAAAAAATGAACAATCGCTGTGAGACACTTTCAAGTTATCGATGCTGCGCCTTTGAGGATTACGGTAGTTAAAATGCATTTTCTGGCCTAATTTTTCGATGTTTCGTAGATTTTCGACTTTTTTTTTAACAGAAATCTGGAAAATTTACAAAAAAAATCACATAAAGACAATGAAAATCATCGGGAAATCGAAGAAAATGGACCAGAAAACAATTATTTACATACTTGTAACGGACCGGGCCGTGCCGGGCTTTTTCCCGAATTTCGGAGA</canonical>
            <polymorphic>TCGCAGAAACCCCGAAACTGCGATTTTTTCGCTTTTTGAAGCGATTTTTCGAAATTTTTCTTCGTTGCTGAATCTACATATTTTTCTACACAGAGTGTTCGGTCGAAGTTCCCTTTTATGGAAAAAAACTCACTTCGAAGCGGACATACAAACTTGTCTCGACGAGTGATTCAAGTATAAAAACGACCAAAGTGATTCAGAATTCGATCCGATTTGTGAGATCTGATACAGATTCGGCGTCTTCACAGCTTGACTGAAATTGGTGAAGAATTTCGCATTGTTCTCCAATTTTGTGACAATTTGTTGTCTGACTTCTTTCAACCCATCGAAATGATCTCGTTTCACAGAAAGCAGCACTAGACACGCTGGAATGTCTTGATCTTTGTTGCACCAGGGATACGAAATGTAGGCGTAGAAGAAGCCGGTGTCATTGAAACGTGGCAAACAGATGGGCACCCAGTTTTGAGAATCCGTTTTGAGAGTGGTGTCGGAGACGAGAWTGATGAGAATGTTCAAGTCGCGAGGATGGATTACGTATTTCTGGAAAAAATTTGCAAAAAATTATTGAAAAATTTTTTTTTCGATTTTTTAAATAAATTTCATGATTTTCGAATTTTTCATATGAAAAACCGCAAAAAATCGCAATACAATGAAACTTATTGGAAAATCGACAAAATTCATCGGAAAATTGAAAAAAATTGCTCTACAGTACTTCAACGGCACAGCATGGAAAAAATGAACAATCGCTGTGAGACACTTTCAAGTTATCGATGCTGCGCCTTTGAGGATTACGGTAGTTAAAATGCATTTTCTGGCCTAATTTTTCGATGTTTCGTAGATTTTCGACTTTTTTTTTAACAGAAATCTGGAAAATTTACAAAAAAAATCACATAAAGACAATGAAAATCATCGGGAAATCGAAGAAAATGGACCAGAAAACAATTATTTACATACTTGTAACGGACCGGGCCGTGCCGGGCTTTTTCCCGAATTTCGGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAATGTCTTGATCTTTGTTG</pcr_primer_p1>
		<pcr_primer_p2>GTGCCGTTGAAGTACTGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>356</pcr_amplicon_size>
		<canonical_amplicon>GGAATGTCTTGATCTTTGTTGCACCAGGGATACGAAATGTAGGCGTAGAAGAAGCCGGTGTCATTGAAACGTGGCAAACAGATGGGCACCCAGTTTTGAGAATCCGTTTTGAGAGTGGTGTCGGAGACGAGATTGATGAGAATGTTCAAGTCGCGAGGATGGATTACGTATTTCTGGAAAAAATTTGCAAAAAATTATTGAAAAATTTTTTTTTCGATTTTTTAAATAAATTTCATGATTTTCGAATTTTTCATATGAAAAACCGCAAAAAATCGCAATACAATGAAACTTATTGGAAAATCGACAAAATTCATCGGAAAATTGAAAAAAATTGCTCTACAGTACTTCAACGGCAC</canonical_amplicon>
		<polymorphic_amplicon>GGAATGTCTTGATCTTTGTTGCACCAGGGATACGAAATGTAGGCGTAGAAGAAGCCGGTGTCATTGAAACGTGGCAAACAGATGGGCACCCAGTTTTGAGAATCCGTTTTGAGAGTGGTGTCGGAGACGAGAWTGATGAGAATGTTCAAGTCGCGAGGATGGATTACGTATTTCTGGAAAAAATTTGCAAAAAATTATTGAAAAATTTTTTTTTCGATTTTTTAAATAAATTTCATGATTTTCGAATTTTTCATATGAAAAACCGCAAAAAATCGCAATACAATGAAACTTATTGGAAAATCGACAAAATTCATCGGAAAATTGAAAAAAATTGCTCTACAGTACTTCAACGGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30065</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>638148</contig_pos>
        <strand></strand>
        <context>atgctgatgc[A/C]agtggttttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATCCCCCATATCCTGGTGCCAGTATTATGCAACTCCCATATGCTGATGC</left_flank>
        <right_flank>AGTGGTTTTTTGTCAGGTTTTTCCGGTAAAACCCAGATTCTCTTTCACGT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGGTGTTGAGGAGTTTTCGGAATGAAACTGAAAGAAAAATTTTAAGAGTCGGACTATTACAAATCGAAATACTCCGAAAAATTTGCAAATTTGGAATATTCCGAAATTCCGAAAACTTTCAATTTCCCGAAGTTTTCAAGAATCGGAACATCCCGGAATCTCTAAGCAGTCCCCGATACGAGTGGTGAATACCTTCTGCCTTTTTCCTGGCTTCTCTATATGAATAATGTTTCTAGACTAATGTGAGTTTTCATCTGAATTTCGAAAAAATGTCGAAAAGGAGCTATTAGGGTTGGAATTTGAAATTCTCCTGATATTTTCCCATGAGATCATATCTATTCTTTTATGACACCTGCCGCGGTTTACAATCTGGGGTGTGAATTCATTTCGCACCTGTTTTTTACGTCTTCGCCTACATTTCACCTACATTCCCTGATGCCAGTGATATGATCCCCCATATCCTGGTGCCAGTATTATGCAACTCCCATATGCTGATGCAAGTGGTTTTTTGTCAGGTTTTTCCGGTAAAACCCAGATTCTCTTTCACGTACTGAGTCTCTACGCGGCGAAAGGGATCAACAGACGAAAAGTCTGGCTAATCAGTACACTTTCGGAGTTTCTCATTAGACATAGTTTTTCTTTCCCGTTAATTTATCCGTAGACCTCGCTTTTTGAAGCGATTTTTCGAAATTTTATGCATTAAAAAAATTTTTCTTTGACTGGGTTGACTGGTAAAACGATAGGCGGACTGTACCAAGCGATTGAGTAGCGACTGAGGACTTACCTTCTATCTTCGGATGCTGCCCAGACCCATTTGGCTGGAATCCAGCTCCCAGTGGTTTCTCGCGAATCAAATTCTCTATCAGCTCTCCTTTCTCAGTGACCTCACGACGCAAGCGACTATTTTCGGATTCCAATTGGAGGATCTGAATGTAAATCGCTATTTATTTGACCTAGGTTTTGATCCTATCTATTACCGTATCTGCGTTCTCCGAGTGT</canonical>
            <polymorphic>AGGGTGTTGAGGAGTTTTCGGAATGAAACTGAAAGAAAAATTTTAAGAGTCGGACTATTACAAATCGAAATACTCCGAAAAATTTGCAAATTTGGAATATTCCGAAATTCCGAAAACTTTCAATTTCCCGAAGTTTTCAAGAATCGGAACATCCCGGAATCTCTAAGCAGTCCCCGATACGAGTGGTGAATACCTTCTGCCTTTTTCCTGGCTTCTCTATATGAATAATGTTTCTAGACTAATGTGAGTTTTCATCTGAATTTCGAAAAAATGTCGAAAAGGAGCTATTAGGGTTGGAATTTGAAATTCTCCTGATATTTTCCCATGAGATCATATCTATTCTTTTATGACACCTGCCGCGGTTTACAATCTGGGGTGTGAATTCATTTCGCACCTGTTTTTTACGTCTTCGCCTACATTTCACCTACATTCCCTGATGCCAGTGATATGATCCCCCATATCCTGGTGCCAGTATTATGCAACTCCCATATGCTGATGCMAGTGGTTTTTTGTCAGGTTTTTCCGGTAAAACCCAGATTCTCTTTCACGTACTGAGTCTCTACGCGGCGAAAGGGATCAACAGACGAAAAGTCTGGCTAATCAGTACACTTTCGGAGTTTCTCATTAGACATAGTTTTTCTTTCCCGTTAATTTATCCGTAGACCTCGCTTTTTGAAGCGATTTTTCGAAATTTTATGCATTAAAAAAATTTTTCTTTGACTGGGTTGACTGGTAAAACGATAGGCGGACTGTACCAAGCGATTGAGTAGCGACTGAGGACTTACCTTCTATCTTCGGATGCTGCCCAGACCCATTTGGCTGGAATCCAGCTCCCAGTGGTTTCTCGCGAATCAAATTCTCTATCAGCTCTCCTTTCTCAGTGACCTCACGACGCAAGCGACTATTTTCGGATTCCAATTGGAGGATCTGAATGTAAATCGCTATTTATTTGACCTAGGTTTTGATCCTATCTATTACCGTATCTGCGTTCTCCGAGTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>393 302 200 86 19</canonical_bands>
                <polymorphic_bands>393 302 219 86</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCACCTACATTCCCTGAT</pcr_primer_p1>
		<pcr_primer_p2>GAGGTCTACGGATAAATTAACG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTCACCTACATTCCCTGATGCCAGTGATATGATCCCCCATATCCTGGTGCCAGTATTATGCAACTCCCATATGCTGATGCAAGTGGTTTTTTGTCAGGTTTTTCCGGTAAAACCCAGATTCTCTTTCACGTACTGAGTCTCTACGCGGCGAAAGGGATCAACAGACGAAAAGTCTGGCTAATCAGTACACTTTCGGAGTTTCTCATTAGACATAGTTTTTCTTTCCCGTTAATTTATCCGTAGACCTC</canonical_amplicon>
		<polymorphic_amplicon>ATTTCACCTACATTCCCTGATGCCAGTGATATGATCCCCCATATCCTGGTGCCAGTATTATGCAACTCCCATATGCTGATGCMAGTGGTTTTTTGTCAGGTTTTTCCGGTAAAACCCAGATTCTCTTTCACGTACTGAGTCTCTACGCGGCGAAAGGGATCAACAGACGAAAAGTCTGGCTAATCAGTACACTTTCGGAGTTTCTCATTAGACATAGTTTTTCTTTCCCGTTAATTTATCCGTAGACCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30066</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>638205</contig_pos>
        <strand></strand>
        <context>acgtactgag[T/C]ctctacgcgg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTTGTCAGGTTTTTCCGGTAAAACCCAGATTCTCTTTCACGTACTGAG</left_flank>
        <right_flank>CTCTACGCGGCGAAAGGGATCAACAGACGAAAAGTCTGGCTAATCAGTAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACAAATCGAAATACTCCGAAAAATTTGCAAATTTGGAATATTCCGAAATTCCGAAAACTTTCAATTTCCCGAAGTTTTCAAGAATCGGAACATCCCGGAATCTCTAAGCAGTCCCCGATACGAGTGGTGAATACCTTCTGCCTTTTTCCTGGCTTCTCTATATGAATAATGTTTCTAGACTAATGTGAGTTTTCATCTGAATTTCGAAAAAATGTCGAAAAGGAGCTATTAGGGTTGGAATTTGAAATTCTCCTGATATTTTCCCATGAGATCATATCTATTCTTTTATGACACCTGCCGCGGTTTACAATCTGGGGTGTGAATTCATTTCGCACCTGTTTTTTACGTCTTCGCCTACATTTCACCTACATTCCCTGATGCCAGTGATATGATCCCCCATATCCTGGTGCCAGTATTATGCAACTCCCATATGCTGATGCAAGTGGTTTTTTGTCAGGTTTTTCCGGTAAAACCCAGATTCTCTTTCACGTACTGAGTCTCTACGCGGCGAAAGGGATCAACAGACGAAAAGTCTGGCTAATCAGTACACTTTCGGAGTTTCTCATTAGACATAGTTTTTCTTTCCCGTTAATTTATCCGTAGACCTCGCTTTTTGAAGCGATTTTTCGAAATTTTATGCATTAAAAAAATTTTTCTTTGACTGGGTTGACTGGTAAAACGATAGGCGGACTGTACCAAGCGATTGAGTAGCGACTGAGGACTTACCTTCTATCTTCGGATGCTGCCCAGACCCATTTGGCTGGAATCCAGCTCCCAGTGGTTTCTCGCGAATCAAATTCTCTATCAGCTCTCCTTTCTCAGTGACCTCACGACGCAAGCGACTATTTTCGGATTCCAATTGGAGGATCTGAATGTAAATCGCTATTTATTTGACCTAGGTTTTGATCCTATCTATTACCGTATCTGCGTTCTCCGAGTGTATCTTCTGCAACGTGGCAAGTCGAGTAATCAGCTCTACGTTCTCTGATTCGATAGCT</canonical>
            <polymorphic>TTACAAATCGAAATACTCCGAAAAATTTGCAAATTTGGAATATTCCGAAATTCCGAAAACTTTCAATTTCCCGAAGTTTTCAAGAATCGGAACATCCCGGAATCTCTAAGCAGTCCCCGATACGAGTGGTGAATACCTTCTGCCTTTTTCCTGGCTTCTCTATATGAATAATGTTTCTAGACTAATGTGAGTTTTCATCTGAATTTCGAAAAAATGTCGAAAAGGAGCTATTAGGGTTGGAATTTGAAATTCTCCTGATATTTTCCCATGAGATCATATCTATTCTTTTATGACACCTGCCGCGGTTTACAATCTGGGGTGTGAATTCATTTCGCACCTGTTTTTTACGTCTTCGCCTACATTTCACCTACATTCCCTGATGCCAGTGATATGATCCCCCATATCCTGGTGCCAGTATTATGCAACTCCCATATGCTGATGCAAGTGGTTTTTTGTCAGGTTTTTCCGGTAAAACCCAGATTCTCTTTCACGTACTGAGYCTCTACGCGGCGAAAGGGATCAACAGACGAAAAGTCTGGCTAATCAGTACACTTTCGGAGTTTCTCATTAGACATAGTTTTTCTTTCCCGTTAATTTATCCGTAGACCTCGCTTTTTGAAGCGATTTTTCGAAATTTTATGCATTAAAAAAATTTTTCTTTGACTGGGTTGACTGGTAAAACGATAGGCGGACTGTACCAAGCGATTGAGTAGCGACTGAGGACTTACCTTCTATCTTCGGATGCTGCCCAGACCCATTTGGCTGGAATCCAGCTCCCAGTGGTTTCTCGCGAATCAAATTCTCTATCAGCTCTCCTTTCTCAGTGACCTCACGACGCAAGCGACTATTTTCGGATTCCAATTGGAGGATCTGAATGTAAATCGCTATTTATTTGACCTAGGTTTTGATCCTATCTATTACCGTATCTGCGTTCTCCGAGTGTATCTTCTGCAACGTGGCAAGTCGAGTAATCAGCTCTACGTTCTCTGATTCGATAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>379 269 135 84 62 26 18 16 11</canonical_bands>
                <polymorphic_bands>379 287 135 84 62 26 16 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCACCTACATTCCCTGAT</pcr_primer_p1>
		<pcr_primer_p2>GAGGTCTACGGATAAATTAACG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTCACCTACATTCCCTGATGCCAGTGATATGATCCCCCATATCCTGGTGCCAGTATTATGCAACTCCCATATGCTGATGCAAGTGGTTTTTTGTCAGGTTTTTCCGGTAAAACCCAGATTCTCTTTCACGTACTGAGTCTCTACGCGGCGAAAGGGATCAACAGACGAAAAGTCTGGCTAATCAGTACACTTTCGGAGTTTCTCATTAGACATAGTTTTTCTTTCCCGTTAATTTATCCGTAGACCTC</canonical_amplicon>
		<polymorphic_amplicon>ATTTCACCTACATTCCCTGATGCCAGTGATATGATCCCCCATATCCTGGTGCCAGTATTATGCAACTCCCATATGCTGATGCAAGTGGTTTTTTGTCAGGTTTTTCCGGTAAAACCCAGATTCTCTTTCACGTACTGAGYCTCTACGCGGCGAAAGGGATCAACAGACGAAAAGTCTGGCTAATCAGTACACTTTCGGAGTTTCTCATTAGACATAGTTTTTCTTTCCCGTTAATTTATCCGTAGACCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30067</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>638263</contig_pos>
        <strand></strand>
        <context>tacactttcg[G/A]agtttctcat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGGCGAAAGGGATCAACAGACGAAAAGTCTGGCTAATCAGTACACTTTCG</left_flank>
        <right_flank>AGTTTCTCATTAGACATAGTTTTTCTTTCCCGTTAATTTATCCGTAGACC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTTCAATTTCCCGAAGTTTTCAAGAATCGGAACATCCCGGAATCTCTAAGCAGTCCCCGATACGAGTGGTGAATACCTTCTGCCTTTTTCCTGGCTTCTCTATATGAATAATGTTTCTAGACTAATGTGAGTTTTCATCTGAATTTCGAAAAAATGTCGAAAAGGAGCTATTAGGGTTGGAATTTGAAATTCTCCTGATATTTTCCCATGAGATCATATCTATTCTTTTATGACACCTGCCGCGGTTTACAATCTGGGGTGTGAATTCATTTCGCACCTGTTTTTTACGTCTTCGCCTACATTTCACCTACATTCCCTGATGCCAGTGATATGATCCCCCATATCCTGGTGCCAGTATTATGCAACTCCCATATGCTGATGCAAGTGGTTTTTTGTCAGGTTTTTCCGGTAAAACCCAGATTCTCTTTCACGTACTGAGTCTCTACGCGGCGAAAGGGATCAACAGACGAAAAGTCTGGCTAATCAGTACACTTTCGGAGTTTCTCATTAGACATAGTTTTTCTTTCCCGTTAATTTATCCGTAGACCTCGCTTTTTGAAGCGATTTTTCGAAATTTTATGCATTAAAAAAATTTTTCTTTGACTGGGTTGACTGGTAAAACGATAGGCGGACTGTACCAAGCGATTGAGTAGCGACTGAGGACTTACCTTCTATCTTCGGATGCTGCCCAGACCCATTTGGCTGGAATCCAGCTCCCAGTGGTTTCTCGCGAATCAAATTCTCTATCAGCTCTCCTTTCTCAGTGACCTCACGACGCAAGCGACTATTTTCGGATTCCAATTGGAGGATCTGAATGTAAATCGCTATTTATTTGACCTAGGTTTTGATCCTATCTATTACCGTATCTGCGTTCTCCGAGTGTATCTTCTGCAACGTGGCAAGTCGAGTAATCAGCTCTACGTTCTCTGATTCGATAGCTGACATCGAGGAGACGCTCTCGTTGCCGTCGAATGTCTGAAATATTCCAATAGTTAGAT</canonical>
            <polymorphic>ACTTTCAATTTCCCGAAGTTTTCAAGAATCGGAACATCCCGGAATCTCTAAGCAGTCCCCGATACGAGTGGTGAATACCTTCTGCCTTTTTCCTGGCTTCTCTATATGAATAATGTTTCTAGACTAATGTGAGTTTTCATCTGAATTTCGAAAAAATGTCGAAAAGGAGCTATTAGGGTTGGAATTTGAAATTCTCCTGATATTTTCCCATGAGATCATATCTATTCTTTTATGACACCTGCCGCGGTTTACAATCTGGGGTGTGAATTCATTTCGCACCTGTTTTTTACGTCTTCGCCTACATTTCACCTACATTCCCTGATGCCAGTGATATGATCCCCCATATCCTGGTGCCAGTATTATGCAACTCCCATATGCTGATGCAAGTGGTTTTTTGTCAGGTTTTTCCGGTAAAACCCAGATTCTCTTTCACGTACTGAGTCTCTACGCGGCGAAAGGGATCAACAGACGAAAAGTCTGGCTAATCAGTACACTTTCGRAGTTTCTCATTAGACATAGTTTTTCTTTCCCGTTAATTTATCCGTAGACCTCGCTTTTTGAAGCGATTTTTCGAAATTTTATGCATTAAAAAAATTTTTCTTTGACTGGGTTGACTGGTAAAACGATAGGCGGACTGTACCAAGCGATTGAGTAGCGACTGAGGACTTACCTTCTATCTTCGGATGCTGCCCAGACCCATTTGGCTGGAATCCAGCTCCCAGTGGTTTCTCGCGAATCAAATTCTCTATCAGCTCTCCTTTCTCAGTGACCTCACGACGCAAGCGACTATTTTCGGATTCCAATTGGAGGATCTGAATGTAAATCGCTATTTATTTGACCTAGGTTTTGATCCTATCTATTACCGTATCTGCGTTCTCCGAGTGTATCTTCTGCAACGTGGCAAGTCGAGTAATCAGCTCTACGTTCTCTGATTCGATAGCTGACATCGAGGAGACGCTCTCGTTGCCGTCGAATGTCTGAAATATTCCAATAGTTAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>357 183 113 111 65 51 49 31 21 19</canonical_bands>
                <polymorphic_bands>540 113 111 65 51 49 31 21 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCACCTACATTCCCTGATG</pcr_primer_p1>
		<pcr_primer_p2>AGCGAGGTCTACGGATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCACCTACATTCCCTGATGCCAGTGATATGATCCCCCATATCCTGGTGCCAGTATTATGCAACTCCCATATGCTGATGCAAGTGGTTTTTTGTCAGGTTTTTCCGGTAAAACCCAGATTCTCTTTCACGTACTGAGTCTCTACGCGGCGAAAGGGATCAACAGACGAAAAGTCTGGCTAATCAGTACACTTTCGGAGTTTCTCATTAGACATAGTTTTTCTTTCCCGTTAATTTATCCGTAGACCTCGCT</canonical_amplicon>
		<polymorphic_amplicon>TTCACCTACATTCCCTGATGCCAGTGATATGATCCCCCATATCCTGGTGCCAGTATTATGCAACTCCCATATGCTGATGCAAGTGGTTTTTTGTCAGGTTTTTCCGGTAAAACCCAGATTCTCTTTCACGTACTGAGTCTCTACGCGGCGAAAGGGATCAACAGACGAAAAGTCTGGCTAATCAGTACACTTTCGRAGTTTCTCATTAGACATAGTTTTTCTTTCCCGTTAATTTATCCGTAGACCTCGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30068</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>638275</contig_pos>
        <strand></strand>
        <context>gtttctcatt[A/T]gacatarttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAACAGACGAAAAGTCTGGCTAATCAGTACACTTTCGGAGTTTCTCATT</left_flank>
        <right_flank>GACATAGTTTTTCTTTCCCGTTAATTTATCCGTAGACCTCGCTTTTTGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGAAGTTTTCAAGAATCGGAACATCCCGGAATCTCTAAGCAGTCCCCGATACGAGTGGTGAATACCTTCTGCCTTTTTCCTGGCTTCTCTATATGAATAATGTTTCTAGACTAATGTGAGTTTTCATCTGAATTTCGAAAAAATGTCGAAAAGGAGCTATTAGGGTTGGAATTTGAAATTCTCCTGATATTTTCCCATGAGATCATATCTATTCTTTTATGACACCTGCCGCGGTTTACAATCTGGGGTGTGAATTCATTTCGCACCTGTTTTTTACGTCTTCGCCTACATTTCACCTACATTCCCTGATGCCAGTGATATGATCCCCCATATCCTGGTGCCAGTATTATGCAACTCCCATATGCTGATGCAAGTGGTTTTTTGTCAGGTTTTTCCGGTAAAACCCAGATTCTCTTTCACGTACTGAGTCTCTACGCGGCGAAAGGGATCAACAGACGAAAAGTCTGGCTAATCAGTACACTTTCGGAGTTTCTCATTAGACATAGTTTTTCTTTCCCGTTAATTTATCCGTAGACCTCGCTTTTTGAAGCGATTTTTCGAAATTTTATGCATTAAAAAAATTTTTCTTTGACTGGGTTGACTGGTAAAACGATAGGCGGACTGTACCAAGCGATTGAGTAGCGACTGAGGACTTACCTTCTATCTTCGGATGCTGCCCAGACCCATTTGGCTGGAATCCAGCTCCCAGTGGTTTCTCGCGAATCAAATTCTCTATCAGCTCTCCTTTCTCAGTGACCTCACGACGCAAGCGACTATTTTCGGATTCCAATTGGAGGATCTGAATGTAAATCGCTATTTATTTGACCTAGGTTTTGATCCTATCTATTACCGTATCTGCGTTCTCCGAGTGTATCTTCTGCAACGTGGCAAGTCGAGTAATCAGCTCTACGTTCTCTGATTCGATAGCTGACATCGAGGAGACGCTCTCGTTGCCGTCGAATGTCTGAAATATTCCAATAGTTAGATGAACGGCCAATG</canonical>
            <polymorphic>CCGAAGTTTTCAAGAATCGGAACATCCCGGAATCTCTAAGCAGTCCCCGATACGAGTGGTGAATACCTTCTGCCTTTTTCCTGGCTTCTCTATATGAATAATGTTTCTAGACTAATGTGAGTTTTCATCTGAATTTCGAAAAAATGTCGAAAAGGAGCTATTAGGGTTGGAATTTGAAATTCTCCTGATATTTTCCCATGAGATCATATCTATTCTTTTATGACACCTGCCGCGGTTTACAATCTGGGGTGTGAATTCATTTCGCACCTGTTTTTTACGTCTTCGCCTACATTTCACCTACATTCCCTGATGCCAGTGATATGATCCCCCATATCCTGGTGCCAGTATTATGCAACTCCCATATGCTGATGCAAGTGGTTTTTTGTCAGGTTTTTCCGGTAAAACCCAGATTCTCTTTCACGTACTGAGTCTCTACGCGGCGAAAGGGATCAACAGACGAAAAGTCTGGCTAATCAGTACACTTTCGGAGTTTCTCATTWGACATAGTTTTTCTTTCCCGTTAATTTATCCGTAGACCTCGCTTTTTGAAGCGATTTTTCGAAATTTTATGCATTAAAAAAATTTTTCTTTGACTGGGTTGACTGGTAAAACGATAGGCGGACTGTACCAAGCGATTGAGTAGCGACTGAGGACTTACCTTCTATCTTCGGATGCTGCCCAGACCCATTTGGCTGGAATCCAGCTCCCAGTGGTTTCTCGCGAATCAAATTCTCTATCAGCTCTCCTTTCTCAGTGACCTCACGACGCAAGCGACTATTTTCGGATTCCAATTGGAGGATCTGAATGTAAATCGCTATTTATTTGACCTAGGTTTTGATCCTATCTATTACCGTATCTGCGTTCTCCGAGTGTATCTTCTGCAACGTGGCAAGTCGAGTAATCAGCTCTACGTTCTCTGATTCGATAGCTGACATCGAGGAGACGCTCTCGTTGCCGTCGAATGTCTGAAATATTCCAATAGTTAGATGAACGGCCAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTGATGCCAGTGATATGAT</pcr_primer_p1>
		<pcr_primer_p2>CTTCAAAAAGCGAGGTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CCTGATGCCAGTGATATGATCCCCCATATCCTGGTGCCAGTATTATGCAACTCCCATATGCTGATGCAAGTGGTTTTTTGTCAGGTTTTTCCGGTAAAACCCAGATTCTCTTTCACGTACTGAGTCTCTACGCGGCGAAAGGGATCAACAGACGAAAAGTCTGGCTAATCAGTACACTTTCGGAGTTTCTCATTAGACATAGTTTTTCTTTCCCGTTAATTTATCCGTAGACCTCGCTTTTTGAAG</canonical_amplicon>
		<polymorphic_amplicon>CCTGATGCCAGTGATATGATCCCCCATATCCTGGTGCCAGTATTATGCAACTCCCATATGCTGATGCAAGTGGTTTTTTGTCAGGTTTTTCCGGTAAAACCCAGATTCTCTTTCACGTACTGAGTCTCTACGCGGCGAAAGGGATCAACAGACGAAAAGTCTGGCTAATCAGTACACTTTCGGAGTTTCTCATTWGACATAGTTTTTCTTTCCCGTTAATTTATCCGTAGACCTCGCTTTTTGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30069</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>638282</contig_pos>
        <strand></strand>
        <context>attwgacata[G/A]tttttcttTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACGAAAAGTCTGGCTAATCAGTACACTTTCGGAGTTTCTCATTAGACATA</left_flank>
        <right_flank>TTTTTCTTTCCCGTTAATTTATCCGTAGACCTCGCTTTTTGAAGCGATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAAGAATCGGAACATCCCGGAATCTCTAAGCAGTCCCCGATACGAGTGGTGAATACCTTCTGCCTTTTTCCTGGCTTCTCTATATGAATAATGTTTCTAGACTAATGTGAGTTTTCATCTGAATTTCGAAAAAATGTCGAAAAGGAGCTATTAGGGTTGGAATTTGAAATTCTCCTGATATTTTCCCATGAGATCATATCTATTCTTTTATGACACCTGCCGCGGTTTACAATCTGGGGTGTGAATTCATTTCGCACCTGTTTTTTACGTCTTCGCCTACATTTCACCTACATTCCCTGATGCCAGTGATATGATCCCCCATATCCTGGTGCCAGTATTATGCAACTCCCATATGCTGATGCAAGTGGTTTTTTGTCAGGTTTTTCCGGTAAAACCCAGATTCTCTTTCACGTACTGAGTCTCTACGCGGCGAAAGGGATCAACAGACGAAAAGTCTGGCTAATCAGTACACTTTCGGAGTTTCTCATTAGACATAGTTTTTCTTTCCCGTTAATTTATCCGTAGACCTCGCTTTTTGAAGCGATTTTTCGAAATTTTATGCATTAAAAAAATTTTTCTTTGACTGGGTTGACTGGTAAAACGATAGGCGGACTGTACCAAGCGATTGAGTAGCGACTGAGGACTTACCTTCTATCTTCGGATGCTGCCCAGACCCATTTGGCTGGAATCCAGCTCCCAGTGGTTTCTCGCGAATCAAATTCTCTATCAGCTCTCCTTTCTCAGTGACCTCACGACGCAAGCGACTATTTTCGGATTCCAATTGGAGGATCTGAATGTAAATCGCTATTTATTTGACCTAGGTTTTGATCCTATCTATTACCGTATCTGCGTTCTCCGAGTGTATCTTCTGCAACGTGGCAAGTCGAGTAATCAGCTCTACGTTCTCTGATTCGATAGCTGACATCGAGGAGACGCTCTCGTTGCCGTCGAATGTCTGAAATATTCCAATAGTTAGATGAACGGCCAATGAGATATA</canonical>
            <polymorphic>TTTCAAGAATCGGAACATCCCGGAATCTCTAAGCAGTCCCCGATACGAGTGGTGAATACCTTCTGCCTTTTTCCTGGCTTCTCTATATGAATAATGTTTCTAGACTAATGTGAGTTTTCATCTGAATTTCGAAAAAATGTCGAAAAGGAGCTATTAGGGTTGGAATTTGAAATTCTCCTGATATTTTCCCATGAGATCATATCTATTCTTTTATGACACCTGCCGCGGTTTACAATCTGGGGTGTGAATTCATTTCGCACCTGTTTTTTACGTCTTCGCCTACATTTCACCTACATTCCCTGATGCCAGTGATATGATCCCCCATATCCTGGTGCCAGTATTATGCAACTCCCATATGCTGATGCAAGTGGTTTTTTGTCAGGTTTTTCCGGTAAAACCCAGATTCTCTTTCACGTACTGAGTCTCTACGCGGCGAAAGGGATCAACAGACGAAAAGTCTGGCTAATCAGTACACTTTCGGAGTTTCTCATTAGACATARTTTTTCTTTCCCGTTAATTTATCCGTAGACCTCGCTTTTTGAAGCGATTTTTCGAAATTTTATGCATTAAAAAAATTTTTCTTTGACTGGGTTGACTGGTAAAACGATAGGCGGACTGTACCAAGCGATTGAGTAGCGACTGAGGACTTACCTTCTATCTTCGGATGCTGCCCAGACCCATTTGGCTGGAATCCAGCTCCCAGTGGTTTCTCGCGAATCAAATTCTCTATCAGCTCTCCTTTCTCAGTGACCTCACGACGCAAGCGACTATTTTCGGATTCCAATTGGAGGATCTGAATGTAAATCGCTATTTATTTGACCTAGGTTTTGATCCTATCTATTACCGTATCTGCGTTCTCCGAGTGTATCTTCTGCAACGTGGCAAGTCGAGTAATCAGCTCTACGTTCTCTGATTCGATAGCTGACATCGAGGAGACGCTCTCGTTGCCGTCGAATGTCTGAAATATTCCAATAGTTAGATGAACGGCCAATGAGATATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTGATGCCAGTGATATGAT</pcr_primer_p1>
		<pcr_primer_p2>TCAACCCAGTCAAAGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>297</pcr_amplicon_size>
		<canonical_amplicon>CCTGATGCCAGTGATATGATCCCCCATATCCTGGTGCCAGTATTATGCAACTCCCATATGCTGATGCAAGTGGTTTTTTGTCAGGTTTTTCCGGTAAAACCCAGATTCTCTTTCACGTACTGAGTCTCTACGCGGCGAAAGGGATCAACAGACGAAAAGTCTGGCTAATCAGTACACTTTCGGAGTTTCTCATTAGACATAGTTTTTCTTTCCCGTTAATTTATCCGTAGACCTCGCTTTTTGAAGCGATTTTTCGAAATTTTATGCATTAAAAAAATTTTTCTTTGACTGGGTTGA</canonical_amplicon>
		<polymorphic_amplicon>CCTGATGCCAGTGATATGATCCCCCATATCCTGGTGCCAGTATTATGCAACTCCCATATGCTGATGCAAGTGGTTTTTTGTCAGGTTTTTCCGGTAAAACCCAGATTCTCTTTCACGTACTGAGTCTCTACGCGGCGAAAGGGATCAACAGACGAAAAGTCTGGCTAATCAGTACACTTTCGGAGTTTCTCATTAGACATARTTTTTCTTTCCCGTTAATTTATCCGTAGACCTCGCTTTTTGAAGCGATTTTTCGAAATTTTATGCATTAAAAAAATTTTTCTTTGACTGGGTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30070</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>638344</contig_pos>
        <strand>+</strand>
        <context>TCGAAATTTT[A/G]TGCATTAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTTAATTTATCCGTAGACCTCGCTTTTTGAAGCGATTTTTCGAAATTTT</left_flank>
        <right_flank>TGCATTAAAAAAATTTTTCTTTGACTGGGTTGACTGGTAAAACGATAGGC</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGCCTTTTTCCTGGCTTCTCTATATGAATAATGTTTCTAGACTAATGTGAGTTTTCATCTGAATTTCGAAAAAATGTCGAAAAGGAGCTATTAGGGTTGGAATTTGAAATTCTCCTGATATTTTCCCATGAGATCATATCTATTCTTTTATGACACCTGCCGCGGTTTACAATCTGGGGTGTGAATTCATTTCGCACCTGTTTTTTACGTCTTCGCCTACATTTCACCTACATTCCCTGATGCCAGTGATATGATCCCCCATATCCTGGTGCCAGTATTATGCAACTCCCATATGCTGATGCAAGTGGTTTTTTGTCAGGTTTTTCCGGTAAAACCCAGATTCTCTTTCACGTACTGAGTCTCTACGCGGCGAAAGGGATCAACAGACGAAAAGTCTGGCTAATCAGTACACTTTCGGAGTTTCTCATTAGACATAGTTTTTCTTTCCCGTTAATTTATCCGTAGACCTCGCTTTTTGAAGCGATTTTTCGAAATTTTATGCATTAAAAAAATTTTTCTTTGACTGGGTTGACTGGTAAAACGATAGGCGGACTGTACCAAGCGATTGAGTAGCGACTGAGGACTTACCTTCTATCTTCGGATGCTGCCCAGACCCATTTGGCTGGAATCCAGCTCCCAGTGGTTTCTCGCGAATCAAATTCTCTATCAGCTCTCCTTTCTCAGTGACCTCACGACGCAAGCGACTATTTTCGGATTCCAATTGGAGGATCTGAATGTAAATCGCTATTTATTTGACCTAGGTTTTGATCCTATCTATTACCGTATCTGCGTTCTCCGAGTGTATCTTCTGCAACGTGGCAAGTCGAGTAATCAGCTCTACGTTCTCTGATTCGATAGCTGACATCGAGGAGACGCTCTCGTTGCCGTCGAATGTCTGAAATATTCCAATAGTTAGATGAACGGCCAATGAGATATACATTGGAATTTCATTTTTTTTTTTGGAATTTTCGAAAATTTTGGAAATTTCAGAATTCTGGA</canonical>
            <polymorphic>CTGCCTTTTTCCTGGCTTCTCTATATGAATAATGTTTCTAGACTAATGTGAGTTTTCATCTGAATTTCGAAAAAATGTCGAAAAGGAGCTATTAGGGTTGGAATTTGAAATTCTCCTGATATTTTCCCATGAGATCATATCTATTCTTTTATGACACCTGCCGCGGTTTACAATCTGGGGTGTGAATTCATTTCGCACCTGTTTTTTACGTCTTCGCCTACATTTCACCTACATTCCCTGATGCCAGTGATATGATCCCCCATATCCTGGTGCCAGTATTATGCAACTCCCATATGCTGATGCAAGTGGTTTTTTGTCAGGTTTTTCCGGTAAAACCCAGATTCTCTTTCACGTACTGAGTCTCTACGCGGCGAAAGGGATCAACAGACGAAAAGTCTGGCTAATCAGTACACTTTCGGAGTTTCTCATTAGACATAGTTTTTCTTTCCCGTTAATTTATCCGTAGACCTCGCTTTTTGAAGCGATTTTTCGAAATTTTRTGCATTAAAAAAATTTTTCTTTGACTGGGTTGACTGGTAAAACGATAGGCGGACTGTACCAAGCGATTGAGTAGCGACTGAGGACTTACCTTCTATCTTCGGATGCTGCCCAGACCCATTTGGCTGGAATCCAGCTCCCAGTGGTTTCTCGCGAATCAAATTCTCTATCAGCTCTCCTTTCTCAGTGACCTCACGACGCAAGCGACTATTTTCGGATTCCAATTGGAGGATCTGAATGTAAATCGCTATTTATTTGACCTAGGTTTTGATCCTATCTATTACCGTATCTGCGTTCTCCGAGTGTATCTTCTGCAACGTGGCAAGTCGAGTAATCAGCTCTACGTTCTCTGATTCGATAGCTGACATCGAGGAGACGCTCTCGTTGCCGTCGAATGTCTGAAATATTCCAATAGTTAGATGAACGGCCAATGAGATATACATTGGAATTTCATTTTTTTTTTTGGAATTTTCGAAAATTTTGGAAATTTCAGAATTCTGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATGCAT</site>
                <isoschizomers>
                    <enzyme>BfrBI</enzyme>
                    <enzyme>EcoT22I</enzyme>
                    <enzyme>Mph1103I</enzyme>
                    <enzyme>NsiI</enzyme>
                    <enzyme>Ppu10I</enzyme>
                    <enzyme>Zsp2I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCGTTAATTTATCCGTAGAC</pcr_primer_p1>
		<pcr_primer_p2>AGAAAGGAGAGCTGATAGAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>CCCGTTAATTTATCCGTAGACCTCGCTTTTTGAAGCGATTTTTCGAAATTTTATGCATTAAAAAAATTTTTCTTTGACTGGGTTGACTGGTAAAACGATAGGCGGACTGTACCAAGCGATTGAGTAGCGACTGAGGACTTACCTTCTATCTTCGGATGCTGCCCAGACCCATTTGGCTGGAATCCAGCTCCCAGTGGTTTCTCGCGAATCAAATTCTCTATCAGCTCTCCTTTCT</canonical_amplicon>
		<polymorphic_amplicon>CCCGTTAATTTATCCGTAGACCTCGCTTTTTGAAGCGATTTTTCGAAATTTTRTGCATTAAAAAAATTTTTCTTTGACTGGGTTGACTGGTAAAACGATAGGCGGACTGTACCAAGCGATTGAGTAGCGACTGAGGACTTACCTTCTATCTTCGGATGCTGCCCAGACCCATTTGGCTGGAATCCAGCTCCCAGTGGTTTCTCGCGAATCAAATTCTCTATCAGCTCTCCTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30071</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>669413</contig_pos>
        <strand>+</strand>
        <context>AACGCCTTGA[A/G]AAAAAACTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGTGGGAATACCATCCACGGCTTCAGTTTTCAATGATACAACGCCTTGA</left_flank>
        <right_flank>AAAAAACTGATGACTCGAAATCAGTACTAATGTTTACGGATCTCCTATCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGGTACAAAAAAGTTGTCAACTACAAAATTGAAGCTCTATTTTTGTTTAGTAGACCTACAAATTTCGAGCATTTTTTACAACAAAATCTAAATTTTATTTGAATTCTCCCATTGGACGAAGTAACTTCAACAATTTTTTATTTTATTTTTGTGTTTCACAATATTCTCAAAAGTAGGGTTTCCATTTGGGCGGGTGAAGAAGCGGGCTACCCGCTACCCACCCGGGGGCTCCCACCCGCGGCCTCCTGCGGCCCACCGCAATTAAATGCGTGTGAATTTTAATAAAATTTTTAAGGATAATCACGTATTTTCCAGGAAAAACTGAGTTTCTCAAATCAAAAAACTACAAAAAAGATAATATTTTCCTCACGTAAATATTCGCGGGGGGGAGCCCCCTCCCAAATGGAAACCCTACTCAAAAGTCTAGCATTTCGACCGTACCCTCGACGTGGGAATACCATCCACGGCTTCAGTTTTCAATGATACAACGCCTTGAAAAAAAACTGATGACTCGAAATCAGTACTAATGTTTACGGATCTCCTATCCTACTTCATGACTTTCCAAAAGACGAATCAACGGAAGTGACCAGACTGATTTATTACCCTCCTGTCACTTTTCGATCATATTTCATTTTGTTGATCATGTCGAAAAAAGTTACTAACCGGTTTATAATAACGATATGTTTTAGTTGATACTTTCTGTTTAACACTGTAAAGAATACTTTACAAGTACATAATACTAAAAAGCATACTTGTGGAAAAGATGGCCGGGCCGGAAAAATTAACACATGGCCGGCCCGCTTTTGGAAAATTTCGAAATTTTAGAGCGAATGTATTTATTTTCTTCTTAATAAAGTATTTATTTTCTTCTTAATAAATGAAAATCCACACTAGAGGCTGATTCTGTGAAAAAAATGATTTGAGGTCGTAATTAGAAAAAATTTTCATCTTTGGCTTAATAAATTTTGATTTTTTCTACTAAAAATTAAATTAAATT</canonical>
            <polymorphic>AATTGGTACAAAAAAGTTGTCAACTACAAAATTGAAGCTCTATTTTTGTTTAGTAGACCTACAAATTTCGAGCATTTTTTACAACAAAATCTAAATTTTATTTGAATTCTCCCATTGGACGAAGTAACTTCAACAATTTTTTATTTTATTTTTGTGTTTCACAATATTCTCAAAAGTAGGGTTTCCATTTGGGCGGGTGAAGAAGCGGGCTACCCGCTACCCACCCGGGGGCTCCCACCCGCGGCCTCCTGCGGCCCACCGCAATTAAATGCGTGTGAATTTTAATAAAATTTTTAAGGATAATCACGTATTTTCCAGGAAAAACTGAGTTTCTCAAATCAAAAAACTACAAAAAAGATAATATTTTCCTCACGTAAATATTCGCGGGGGGGAGCCCCCTCCCAAATGGAAACCCTACTCAAAAGTCTAGCATTTCGACCGTACCCTCGACGTGGGAATACCATCCACGGCTTCAGTTTTCAATGATACAACGCCTTGARAAAAAACTGATGACTCGAAATCAGTACTAATGTTTACGGATCTCCTATCCTACTTCATGACTTTCCAAAAGACGAATCAACGGAAGTGACCAGACTGATTTATTACCCTCCTGTCACTTTTCGATCATATTTCATTTTGTTGATCATGTCGAAAAAAGTTACTAACCGGTTTATAATAACGATATGTTTTAGTTGATACTTTCTGTTTAACACTGTAAAGAATACTTTACAAGTACATAATACTAAAAAGCATACTTGTGGAAAAGATGGCCGGGCCGGAAAAATTAACACATGGCCGGCCCGCTTTTGGAAAATTTCGAAATTTTAGAGCGAATGTATTTATTTTCTTCTTAATAAAGTATTTATTTTCTTCTTAATAAATGAAAATCCACACTAGAGGCTGATTCTGTGAAAAAAATGATTTGAGGTCGTAATTAGAAAAAATTTTCATCTTTGGCTTAATAAATTTTGATTTTTTCTACTAAAAATTAAATTAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACCCTACTCAAAAGTCTAGC</pcr_primer_p1>
		<pcr_primer_p2>CATGATCAACAAAATGAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GAAACCCTACTCAAAAGTCTAGCATTTCGACCGTACCCTCGACGTGGGAATACCATCCACGGCTTCAGTTTTCAATGATACAACGCCTTGAAAAAAAACTGATGACTCGAAATCAGTACTAATGTTTACGGATCTCCTATCCTACTTCATGACTTTCCAAAAGACGAATCAACGGAAGTGACCAGACTGATTTATTACCCTCCTGTCACTTTTCGATCATATTTCATTTTGTTGATCATG</canonical_amplicon>
		<polymorphic_amplicon>GAAACCCTACTCAAAAGTCTAGCATTTCGACCGTACCCTCGACGTGGGAATACCATCCACGGCTTCAGTTTTCAATGATACAACGCCTTGARAAAAAACTGATGACTCGAAATCAGTACTAATGTTTACGGATCTCCTATCCTACTTCATGACTTTCCAAAAGACGAATCAACGGAAGTGACCAGACTGATTTATTACCCTCCTGTCACTTTTCGATCATATTTCATTTTGTTGATCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30072</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>671408</contig_pos>
        <strand>+</strand>
        <context>gaaaaagaag[G/T]aaaagaagga</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCACGGGGGCAAAAAATAATAAAGGAGAATCTAGAAAAAGGAAAAAGAAG</left_flank>
        <right_flank>AAAAGAAGGAGCGTAAGAAAAGAAGAATATGCTAGTGTTTGAAAAAAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTAGTTTGGCAAATTTTTTAGGCAACAGGGCAAATTTTCCAAAATACAACGTAAACGCGCTCAGTAGTGAAAGAATATACTGTACTTGCATTGCTGTGATAAGCAACACGGTATCAGGAAAAGTGGACCAACATTTTTTTTGTGAATTGTTTGAAAGAAATAGCGGTATCTCAATGAAACGTTTATCAATATTGTGCAACAGTGAAAAATGTAAAACATGGAAAATGAACACTTTAGAACCCGTAGTTTCAACATTTAAAAAGAGAGAAAAAGTACTCAGATGGACTTTAGACAATCTACATGACGTACAAAAAAGCAAAGTCCTTTTTTGTTGATTTTTTGAGAAGAGGGGGCGGTTTTTTGTGTCTCATCAACGTATTCTTCTACACTCATCAACTATGATAATCACGTGAAGAAAGAGAAGACGATCTAGTGAGAGTTTGTTTCTCACGGGGGCAAAAAATAATAAAGGAGAATCTAGAAAAAGGAAAAAGAAGAAAAAGAAGGAGCGTAAGAAAAGAAGAATATGCTAGTGTTTGAAAAAAATGATAAATGCATAAGAGAGAAAAAGAAGAGGGAATTGACTCATTTTGCTCGGTTACTCTTCTATCTATTCGTAGAAAAACATTGGGATTCTTATAGCAAAGAAGAAGAAGATTCTTTCTTCTCATTAGTTGAATTGGATGGGATGAAGAAGAAGAAGGAGATGGAAAACGAGAAAGAGCAAAAGAGGGATTCTAGATTTTCACGATTTCCTTCTCCTTTGAATACTTCACAACGCCTCCGTCTTCCGTCCATTTTGCTGGTTGATCCGTAAAGAAAATGAAGGAGAGAATATTCGCCTGAAAAGGGGTACATTTTAAGGTTACAAATAAAAATTAATGACTATCCAGTAGAAATTTTCAAAATTATTGAAATTCAAATAAAGATAGCTTCTCATGTTTTCGAAATTCGGACTCCAACACAGTGAATACTGCTGGAATTTCCAATTTTTTCAA</canonical>
            <polymorphic>AGGTAGTTTGGCAAATTTTTTAGGCAACAGGGCAAATTTTCCAAAATACAACGTAAACGCGCTCAGTAGTGAAAGAATATACTGTACTTGCATTGCTGTGATAAGCAACACGGTATCAGGAAAAGTGGACCAACATTTTTTTTGTGAATTGTTTGAAAGAAATAGCGGTATCTCAATGAAACGTTTATCAATATTGTGCAACAGTGAAAAATGTAAAACATGGAAAATGAACACTTTAGAACCCGTAGTTTCAACATTTAAAAAGAGAGAAAAAGTACTCAGATGGACTTTAGACAATCTACATGACGTACAAAAAAGCAAAGTCCTTTTTTGTTGATTTTTTGAGAAGAGGGGGCGGTTTTTTGTGTCTCATCAACGTATTCTTCTACACTCATCAACTATGATAATCACGTGAAGAAAGAGAAGACGATCTAGTGAGAGTTTGTTTCTCACGGGGGCAAAAAATAATAAAGGAGAATCTAGAAAAAGGAAAAAGAAGKAAAAGAAGGAGCGTAAGAAAAGAAGAATATGCTAGTGTTTGAAAAAAATGATAAATGCATAAGAGAGAAAAAGAAGAGGGAATTGACTCATTTTGCTCGGTTACTCTTCTATCTATTCGTAGAAAAACATTGGGATTCTTATAGCAAAGAAGAAGAAGATTCTTTCTTCTCATTAGTTGAATTGGATGGGATGAAGAAGAAGAAGGAGATGGAAAACGAGAAAGAGCAAAAGAGGGATTCTAGATTTTCACGATTTCCTTCTCCTTTGAATACTTCACAACGCCTCCGTCTTCCGTCCATTTTGCTGGTTGATCCGTAAAGAAAATGAAGGAGAGAATATTCGCCTGAAAAGGGGTACATTTTAAGGTTACAAATAAAAATTAATGACTATCCAGTAGAAATTTTCAAAATTATTGAAATTCAAATAAAGATAGCTTCTCATGTTTTCGAAATTCGGACTCCAACACAGTGAATACTGCTGGAATTTCCAATTTTTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATAATCACGTGAAGAAAGAG</pcr_primer_p1>
		<pcr_primer_p2>GCTATAAGAATCCCAATGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATGATAATCACGTGAAGAAAGAGAAGACGATCTAGTGAGAGTTTGTTTCTCACGGGGGCAAAAAATAATAAAGGAGAATCTAGAAAAAGGAAAAAGAAGAAAAAGAAGGAGCGTAAGAAAAGAAGAATATGCTAGTGTTTGAAAAAAATGATAAATGCATAAGAGAGAAAAAGAAGAGGGAATTGACTCATTTTGCTCGGTTACTCTTCTATCTATTCGTAGAAAAACATTGGGATTCTTATAGC</canonical_amplicon>
		<polymorphic_amplicon>ATGATAATCACGTGAAGAAAGAGAAGACGATCTAGTGAGAGTTTGTTTCTCACGGGGGCAAAAAATAATAAAGGAGAATCTAGAAAAAGGAAAAAGAAGKAAAAGAAGGAGCGTAAGAAAAGAAGAATATGCTAGTGTTTGAAAAAAATGATAAATGCATAAGAGAGAAAAAGAAGAGGGAATTGACTCATTTTGCTCGGTTACTCTTCTATCTATTCGTAGAAAAACATTGGGATTCTTATAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30073</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>671521</contig_pos>
        <strand>+</strand>
        <context>ACTCTTCTAT[A/C]TATTSGTAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAGAGAAAAAGAAGAGGGAATTGACTCATTTTGCTCGGTTACTCTTCTAT</left_flank>
        <right_flank>TATTCGTAGAAAAACATTGGGATTCTTATAGCAAAGAAGAAGAAGATTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCAGGAAAAGTGGACCAACATTTTTTTTGTGAATTGTTTGAAAGAAATAGCGGTATCTCAATGAAACGTTTATCAATATTGTGCAACAGTGAAAAATGTAAAACATGGAAAATGAACACTTTAGAACCCGTAGTTTCAACATTTAAAAAGAGAGAAAAAGTACTCAGATGGACTTTAGACAATCTACATGACGTACAAAAAAGCAAAGTCCTTTTTTGTTGATTTTTTGAGAAGAGGGGGCGGTTTTTTGTGTCTCATCAACGTATTCTTCTACACTCATCAACTATGATAATCACGTGAAGAAAGAGAAGACGATCTAGTGAGAGTTTGTTTCTCACGGGGGCAAAAAATAATAAAGGAGAATCTAGAAAAAGGAAAAAGAAGAAAAAGAAGGAGCGTAAGAAAAGAAGAATATGCTAGTGTTTGAAAAAAATGATAAATGCATAAGAGAGAAAAAGAAGAGGGAATTGACTCATTTTGCTCGGTTACTCTTCTATCTATTCGTAGAAAAACATTGGGATTCTTATAGCAAAGAAGAAGAAGATTCTTTCTTCTCATTAGTTGAATTGGATGGGATGAAGAAGAAGAAGGAGATGGAAAACGAGAAAGAGCAAAAGAGGGATTCTAGATTTTCACGATTTCCTTCTCCTTTGAATACTTCACAACGCCTCCGTCTTCCGTCCATTTTGCTGGTTGATCCGTAAAGAAAATGAAGGAGAGAATATTCGCCTGAAAAGGGGTACATTTTAAGGTTACAAATAAAAATTAATGACTATCCAGTAGAAATTTTCAAAATTATTGAAATTCAAATAAAGATAGCTTCTCATGTTTTCGAAATTCGGACTCCAACACAGTGAATACTGCTGGAATTTCCAATTTTTTCAATTTTTTTAACTTTAGAAAACAGGAAAAATGTAGTGCTAACACTGAATTGGTGGAATGAATGAACCTAACTATTATAGTTTTGTGAAACATTTTTTTTGAATCACCCGAAATTT</canonical>
            <polymorphic>TATCAGGAAAAGTGGACCAACATTTTTTTTGTGAATTGTTTGAAAGAAATAGCGGTATCTCAATGAAACGTTTATCAATATTGTGCAACAGTGAAAAATGTAAAACATGGAAAATGAACACTTTAGAACCCGTAGTTTCAACATTTAAAAAGAGAGAAAAAGTACTCAGATGGACTTTAGACAATCTACATGACGTACAAAAAAGCAAAGTCCTTTTTTGTTGATTTTTTGAGAAGAGGGGGCGGTTTTTTGTGTCTCATCAACGTATTCTTCTACACTCATCAACTATGATAATCACGTGAAGAAAGAGAAGACGATCTAGTGAGAGTTTGTTTCTCACGGGGGCAAAAAATAATAAAGGAGAATCTAGAAAAAGGAAAAAGAAGAAAAAGAAGGAGCGTAAGAAAAGAAGAATATGCTAGTGTTTGAAAAAAATGATAAATGCATAAGAGAGAAAAAGAAGAGGGAATTGACTCATTTTGCTCGGTTACTCTTCTATMTATTCGTAGAAAAACATTGGGATTCTTATAGCAAAGAAGAAGAAGATTCTTTCTTCTCATTAGTTGAATTGGATGGGATGAAGAAGAAGAAGGAGATGGAAAACGAGAAAGAGCAAAAGAGGGATTCTAGATTTTCACGATTTCCTTCTCCTTTGAATACTTCACAACGCCTCCGTCTTCCGTCCATTTTGCTGGTTGATCCGTAAAGAAAATGAAGGAGAGAATATTCGCCTGAAAAGGGGTACATTTTAAGGTTACAAATAAAAATTAATGACTATCCAGTAGAAATTTTCAAAATTATTGAAATTCAAATAAAGATAGCTTCTCATGTTTTCGAAATTCGGACTCCAACACAGTGAATACTGCTGGAATTTCCAATTTTTTCAATTTTTTTAACTTTAGAAAACAGGAAAAATGTAGTGCTAACACTGAATTGGTGGAATGAATGAACCTAACTATTATAGTTTTGTGAAACATTTTTTTTGAATCACCCGAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATAAATGCATAAGAGAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GTTGTGAAGTATTCAAAGGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>TGATAAATGCATAAGAGAGAAAAAGAAGAGGGAATTGACTCATTTTGCTCGGTTACTCTTCTATCTATTCGTAGAAAAACATTGGGATTCTTATAGCAAAGAAGAAGAAGATTCTTTCTTCTCATTAGTTGAATTGGATGGGATGAAGAAGAAGAAGGAGATGGAAAACGAGAAAGAGCAAAAGAGGGATTCTAGATTTTCACGATTTCCTTCTCCTTTGAATACTTCACAAC</canonical_amplicon>
		<polymorphic_amplicon>TGATAAATGCATAAGAGAGAAAAAGAAGAGGGAATTGACTCATTTTGCTCGGTTACTCTTCTATMTATTCGTAGAAAAACATTGGGATTCTTATAGCAAAGAAGAAGAAGATTCTTTCTTCTCATTAGTTGAATTGGATGGGATGAAGAAGAAGAAGGAGATGGAAAACGAGAAAGAGCAAAAGAGGGATTCTAGATTTTCACGATTTCCTTCTCCTTTGAATACTTCACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30074</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>671526</contig_pos>
        <strand>+</strand>
        <context>TCTATMTATT[C/G]GTAGAAAAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAAAGAAGAGGGAATTGACTCATTTTGCTCGGTTACTCTTCTATCTATT</left_flank>
        <right_flank>GTAGAAAAACATTGGGATTCTTATAGCAAAGAAGAAGAAGATTCTTTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAAAGTGGACCAACATTTTTTTTGTGAATTGTTTGAAAGAAATAGCGGTATCTCAATGAAACGTTTATCAATATTGTGCAACAGTGAAAAATGTAAAACATGGAAAATGAACACTTTAGAACCCGTAGTTTCAACATTTAAAAAGAGAGAAAAAGTACTCAGATGGACTTTAGACAATCTACATGACGTACAAAAAAGCAAAGTCCTTTTTTGTTGATTTTTTGAGAAGAGGGGGCGGTTTTTTGTGTCTCATCAACGTATTCTTCTACACTCATCAACTATGATAATCACGTGAAGAAAGAGAAGACGATCTAGTGAGAGTTTGTTTCTCACGGGGGCAAAAAATAATAAAGGAGAATCTAGAAAAAGGAAAAAGAAGAAAAAGAAGGAGCGTAAGAAAAGAAGAATATGCTAGTGTTTGAAAAAAATGATAAATGCATAAGAGAGAAAAAGAAGAGGGAATTGACTCATTTTGCTCGGTTACTCTTCTATCTATTCGTAGAAAAACATTGGGATTCTTATAGCAAAGAAGAAGAAGATTCTTTCTTCTCATTAGTTGAATTGGATGGGATGAAGAAGAAGAAGGAGATGGAAAACGAGAAAGAGCAAAAGAGGGATTCTAGATTTTCACGATTTCCTTCTCCTTTGAATACTTCACAACGCCTCCGTCTTCCGTCCATTTTGCTGGTTGATCCGTAAAGAAAATGAAGGAGAGAATATTCGCCTGAAAAGGGGTACATTTTAAGGTTACAAATAAAAATTAATGACTATCCAGTAGAAATTTTCAAAATTATTGAAATTCAAATAAAGATAGCTTCTCATGTTTTCGAAATTCGGACTCCAACACAGTGAATACTGCTGGAATTTCCAATTTTTTCAATTTTTTTAACTTTAGAAAACAGGAAAAATGTAGTGCTAACACTGAATTGGTGGAATGAATGAACCTAACTATTATAGTTTTGTGAAACATTTTTTTTGAATCACCCGAAATTTATCAA</canonical>
            <polymorphic>GGAAAAGTGGACCAACATTTTTTTTGTGAATTGTTTGAAAGAAATAGCGGTATCTCAATGAAACGTTTATCAATATTGTGCAACAGTGAAAAATGTAAAACATGGAAAATGAACACTTTAGAACCCGTAGTTTCAACATTTAAAAAGAGAGAAAAAGTACTCAGATGGACTTTAGACAATCTACATGACGTACAAAAAAGCAAAGTCCTTTTTTGTTGATTTTTTGAGAAGAGGGGGCGGTTTTTTGTGTCTCATCAACGTATTCTTCTACACTCATCAACTATGATAATCACGTGAAGAAAGAGAAGACGATCTAGTGAGAGTTTGTTTCTCACGGGGGCAAAAAATAATAAAGGAGAATCTAGAAAAAGGAAAAAGAAGAAAAAGAAGGAGCGTAAGAAAAGAAGAATATGCTAGTGTTTGAAAAAAATGATAAATGCATAAGAGAGAAAAAGAAGAGGGAATTGACTCATTTTGCTCGGTTACTCTTCTATCTATTSGTAGAAAAACATTGGGATTCTTATAGCAAAGAAGAAGAAGATTCTTTCTTCTCATTAGTTGAATTGGATGGGATGAAGAAGAAGAAGGAGATGGAAAACGAGAAAGAGCAAAAGAGGGATTCTAGATTTTCACGATTTCCTTCTCCTTTGAATACTTCACAACGCCTCCGTCTTCCGTCCATTTTGCTGGTTGATCCGTAAAGAAAATGAAGGAGAGAATATTCGCCTGAAAAGGGGTACATTTTAAGGTTACAAATAAAAATTAATGACTATCCAGTAGAAATTTTCAAAATTATTGAAATTCAAATAAAGATAGCTTCTCATGTTTTCGAAATTCGGACTCCAACACAGTGAATACTGCTGGAATTTCCAATTTTTTCAATTTTTTTAACTTTAGAAAACAGGAAAAATGTAGTGCTAACACTGAATTGGTGGAATGAATGAACCTAACTATTATAGTTTTGTGAAACATTTTTTTTGAATCACCCGAAATTTATCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATAAATGCATAAGAGAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GTTGTGAAGTATTCAAAGGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>TGATAAATGCATAAGAGAGAAAAAGAAGAGGGAATTGACTCATTTTGCTCGGTTACTCTTCTATCTATTCGTAGAAAAACATTGGGATTCTTATAGCAAAGAAGAAGAAGATTCTTTCTTCTCATTAGTTGAATTGGATGGGATGAAGAAGAAGAAGGAGATGGAAAACGAGAAAGAGCAAAAGAGGGATTCTAGATTTTCACGATTTCCTTCTCCTTTGAATACTTCACAAC</canonical_amplicon>
		<polymorphic_amplicon>TGATAAATGCATAAGAGAGAAAAAGAAGAGGGAATTGACTCATTTTGCTCGGTTACTCTTCTATCTATTSGTAGAAAAACATTGGGATTCTTATAGCAAAGAAGAAGAAGATTCTTTCTTCTCATTAGTTGAATTGGATGGGATGAAGAAGAAGAAGGAGATGGAAAACGAGAAAGAGCAAAAGAGGGATTCTAGATTTTCACGATTTCCTTCTCCTTTGAATACTTCACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30075</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>674299</contig_pos>
        <strand></strand>
        <context>ttaaattatt[T/C]gttatatttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CATGAGTCCCAGGTAGAATCCGATTATTTTGATCTGAAATTTAAATTATT</left_flank>
        <right_flank>GTTATATTTTAAAACTATATTTTCACTTACATCAAATCCTAGGACACTTC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGATAGTTATTTTACGAACCATCTAAAATATCAAACTTTTGAAAAGATGTTAGCCTTTTTGACAATTTTGTGAAACATAATTTTTTTTGAAAAAAAGAGACAAACCTCGCGTGCAGTGTTCCACATTTATAGAATCCTCCACAGTTGAAACTGGTGAAACACTCCAAAACTGCCAAACACACAACTGCAGATATATTGTGCTCTGCTGGGATTTGACTGGAAAACATTTCAGATTTTGAGGATGGTTGTGTCTGTGAAACTTGCCTAAAAACGATGAAAGATATTCCAACACATCCAACGGCTAAAGTGTTGAAAATGTGGATTTTTGAGATTTCGGAGATGCATCTGTAATTTTTTGTGTTGTGGTCTAGGCGAAAAAAAAACCGACTTACTTAGTTTTGTCACTCAAAAATGCGCAAACAAATCGGAATGGAAGATGAATCGCCAACATGAGTCCCAGGTAGAATCCGATTATTTTGATCTGAAATTTAAATTATTTGTTATATTTTAAAACTATATTTTCACTTACATCAAATCCTAGGACACTTCTGAAATAAATTGGAGCATAAGTGGCAATTAGAATCAATGTTGAAAGCTCCGTAAATGCACATAGCCATACTGTAAGCACAACTGGACTTGTGAAAATTTTGACATATGGGATTTCCATGTCATCCTTGATGTGAGATTCGGATTTGTTTCTCTGAATTTTTCCGAGCTCTTTGGCGCTGACACTTTTGTGTAAAGTTGGATCATCTTTGTAGACCAATGCCCAGATGATGAACACAGCGAGACATGCAGCAGCATGAAAGTAGAAGCTCCATTTCCACCCCAAATGACTCTCACAAATCTAAAAAACCACAAAACATTATTTCAAAAAACTGCAAAAAGACATAGGTCCCACCGAGATTTGAACTCGGGTCGCAGGATTCAGAGTCCTGAGTGCTAACCGCTACACCATGGAACCGACGGGAGAGAGGGGAGGCGAGGGGCAAGACAAGG</canonical>
            <polymorphic>TGGATAGTTATTTTACGAACCATCTAAAATATCAAACTTTTGAAAAGATGTTAGCCTTTTTGACAATTTTGTGAAACATAATTTTTTTTGAAAAAAAGAGACAAACCTCGCGTGCAGTGTTCCACATTTATAGAATCCTCCACAGTTGAAACTGGTGAAACACTCCAAAACTGCCAAACACACAACTGCAGATATATTGTGCTCTGCTGGGATTTGACTGGAAAACATTTCAGATTTTGAGGATGGTTGTGTCTGTGAAACTTGCCTAAAAACGATGAAAGATATTCCAACACATCCAACGGCTAAAGTGTTGAAAATGTGGATTTTTGAGATTTCGGAGATGCATCTGTAATTTTTTGTGTTGTGGTCTAGGCGAAAAAAAAACCGACTTACTTAGTTTTGTCACTCAAAAATGCGCAAACAAATCGGAATGGAAGATGAATCGCCAACATGAGTCCCAGGTAGAATCCGATTATTTTGATCTGAAATTTAAATTATTYGTTATATTTTAAAACTATATTTTCACTTACATCAAATCCTAGGACACTTCTGAAATAAATTGGAGCATAAGTGGCAATTAGAATCAATGTTGAAAGCTCCGTAAATGCACATAGCCATACTGTAAGCACAACTGGACTTGTGAAAATTTTGACATATGGGATTTCCATGTCATCCTTGATGTGAGATTCGGATTTGTTTCTCTGAATTTTTCCGAGCTCTTTGGCGCTGACACTTTTGTGTAAAGTTGGATCATCTTTGTAGACCAATGCCCAGATGATGAACACAGCGAGACATGCAGCAGCATGAAAGTAGAAGCTCCATTTCCACCCCAAATGACTCTCACAAATCTAAAAAACCACAAAACATTATTTCAAAAAACTGCAAAAAGACATAGGTCCCACCGAGATTTGAACTCGGGTCGCAGGATTCAGAGTCCTGAGTGCTAACCGCTACACCATGGAACCGACGGGAGAGAGGGGAGGCGAGGGGCAAGACAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCGACTTACTTAGTTTTGTCA</pcr_primer_p1>
		<pcr_primer_p2>TTGTGCTTACAGTATGGCTATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACCGACTTACTTAGTTTTGTCACTCAAAAATGCGCAAACAAATCGGAATGGAAGATGAATCGCCAACATGAGTCCCAGGTAGAATCCGATTATTTTGATCTGAAATTTAAATTATTTGTTATATTTTAAAACTATATTTTCACTTACATCAAATCCTAGGACACTTCTGAAATAAATTGGAGCATAAGTGGCAATTAGAATCAATGTTGAAAGCTCCGTAAATGCACATAGCCATACTGTAAGCACAA</canonical_amplicon>
		<polymorphic_amplicon>AACCGACTTACTTAGTTTTGTCACTCAAAAATGCGCAAACAAATCGGAATGGAAGATGAATCGCCAACATGAGTCCCAGGTAGAATCCGATTATTTTGATCTGAAATTTAAATTATTYGTTATATTTTAAAACTATATTTTCACTTACATCAAATCCTAGGACACTTCTGAAATAAATTGGAGCATAAGTGGCAATTAGAATCAATGTTGAAAGCTCCGTAAATGCACATAGCCATACTGTAAGCACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30076</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>674310</contig_pos>
        <strand></strand>
        <context>gttatatttt[A/G]aaactatatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTAGAATCCGATTATTTTGATCTGAAATTTAAATTATTTGTTATATTTT</left_flank>
        <right_flank>AAACTATATTTTCACTTACATCAAATCCTAGGACACTTCTGAAATAAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTACGAACCATCTAAAATATCAAACTTTTGAAAAGATGTTAGCCTTTTTGACAATTTTGTGAAACATAATTTTTTTTGAAAAAAAGAGACAAACCTCGCGTGCAGTGTTCCACATTTATAGAATCCTCCACAGTTGAAACTGGTGAAACACTCCAAAACTGCCAAACACACAACTGCAGATATATTGTGCTCTGCTGGGATTTGACTGGAAAACATTTCAGATTTTGAGGATGGTTGTGTCTGTGAAACTTGCCTAAAAACGATGAAAGATATTCCAACACATCCAACGGCTAAAGTGTTGAAAATGTGGATTTTTGAGATTTCGGAGATGCATCTGTAATTTTTTGTGTTGTGGTCTAGGCGAAAAAAAAACCGACTTACTTAGTTTTGTCACTCAAAAATGCGCAAACAAATCGGAATGGAAGATGAATCGCCAACATGAGTCCCAGGTAGAATCCGATTATTTTGATCTGAAATTTAAATTATTTGTTATATTTTAAAACTATATTTTCACTTACATCAAATCCTAGGACACTTCTGAAATAAATTGGAGCATAAGTGGCAATTAGAATCAATGTTGAAAGCTCCGTAAATGCACATAGCCATACTGTAAGCACAACTGGACTTGTGAAAATTTTGACATATGGGATTTCCATGTCATCCTTGATGTGAGATTCGGATTTGTTTCTCTGAATTTTTCCGAGCTCTTTGGCGCTGACACTTTTGTGTAAAGTTGGATCATCTTTGTAGACCAATGCCCAGATGATGAACACAGCGAGACATGCAGCAGCATGAAAGTAGAAGCTCCATTTCCACCCCAAATGACTCTCACAAATCTAAAAAACCACAAAACATTATTTCAAAAAACTGCAAAAAGACATAGGTCCCACCGAGATTTGAACTCGGGTCGCAGGATTCAGAGTCCTGAGTGCTAACCGCTACACCATGGAACCGACGGGAGAGAGGGGAGGCGAGGGGCAAGACAAGGCAAGCGCTCCC</canonical>
            <polymorphic>TTTACGAACCATCTAAAATATCAAACTTTTGAAAAGATGTTAGCCTTTTTGACAATTTTGTGAAACATAATTTTTTTTGAAAAAAAGAGACAAACCTCGCGTGCAGTGTTCCACATTTATAGAATCCTCCACAGTTGAAACTGGTGAAACACTCCAAAACTGCCAAACACACAACTGCAGATATATTGTGCTCTGCTGGGATTTGACTGGAAAACATTTCAGATTTTGAGGATGGTTGTGTCTGTGAAACTTGCCTAAAAACGATGAAAGATATTCCAACACATCCAACGGCTAAAGTGTTGAAAATGTGGATTTTTGAGATTTCGGAGATGCATCTGTAATTTTTTGTGTTGTGGTCTAGGCGAAAAAAAAACCGACTTACTTAGTTTTGTCACTCAAAAATGCGCAAACAAATCGGAATGGAAGATGAATCGCCAACATGAGTCCCAGGTAGAATCCGATTATTTTGATCTGAAATTTAAATTATTTGTTATATTTTRAAACTATATTTTCACTTACATCAAATCCTAGGACACTTCTGAAATAAATTGGAGCATAAGTGGCAATTAGAATCAATGTTGAAAGCTCCGTAAATGCACATAGCCATACTGTAAGCACAACTGGACTTGTGAAAATTTTGACATATGGGATTTCCATGTCATCCTTGATGTGAGATTCGGATTTGTTTCTCTGAATTTTTCCGAGCTCTTTGGCGCTGACACTTTTGTGTAAAGTTGGATCATCTTTGTAGACCAATGCCCAGATGATGAACACAGCGAGACATGCAGCAGCATGAAAGTAGAAGCTCCATTTCCACCCCAAATGACTCTCACAAATCTAAAAAACCACAAAACATTATTTCAAAAAACTGCAAAAAGACATAGGTCCCACCGAGATTTGAACTCGGGTCGCAGGATTCAGAGTCCTGAGTGCTAACCGCTACACCATGGAACCGACGGGAGAGAGGGGAGGCGAGGGGCAAGACAAGGCAAGCGCTCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 480 19</canonical_bands>
                <polymorphic_bands>520 480</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 479 19</canonical_bands>
                <polymorphic_bands>521 479</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACCGACTTACTTAGTTTTGTCA</pcr_primer_p1>
		<pcr_primer_p2>TTGTGCTTACAGTATGGCTATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACCGACTTACTTAGTTTTGTCACTCAAAAATGCGCAAACAAATCGGAATGGAAGATGAATCGCCAACATGAGTCCCAGGTAGAATCCGATTATTTTGATCTGAAATTTAAATTATTTGTTATATTTTAAAACTATATTTTCACTTACATCAAATCCTAGGACACTTCTGAAATAAATTGGAGCATAAGTGGCAATTAGAATCAATGTTGAAAGCTCCGTAAATGCACATAGCCATACTGTAAGCACAA</canonical_amplicon>
		<polymorphic_amplicon>AACCGACTTACTTAGTTTTGTCACTCAAAAATGCGCAAACAAATCGGAATGGAAGATGAATCGCCAACATGAGTCCCAGGTAGAATCCGATTATTTTGATCTGAAATTTAAATTATTTGTTATATTTTRAAACTATATTTTCACTTACATCAAATCCTAGGACACTTCTGAAATAAATTGGAGCATAAGTGGCAATTAGAATCAATGTTGAAAGCTCCGTAAATGCACATAGCCATACTGTAAGCACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30077</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>683137</contig_pos>
        <strand>+</strand>
        <context>GGAATTTGAT[C/T]CCAGTCCTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATCAATATATTTTTTCTATTACAAAATGTTTGGTTCTATGGAATTTGAT</left_flank>
        <right_flank>CCAGTCCTCAATCGGATATATTGTAGTTTCGGAAATTGTAGATATTGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGCAAATCGAAACCAGACACAAGAAACTGGTGACCACTATGATGATCCGAAAATAATTTCCCCAGAGCCGGAACATTTGTCTTAAAGTCCTATAACATACGAAAAACACTTGAAAAAACTCAGGGCTGTATTCATGAACATTTACTTTTGTAAATAATTTTCTCTCAAAAATCAACTTCCATTTACCTTTTGGTACATGATTCAGTTGATTTTTTGAGAGTAAATGATTTACAAAAGTAAATTTCATGAATACGGCCTCAGATCTAAAAAGTGTTAGAAACGAAACAGTAATTAAAAAAAACTTTTCTTATGTCATTTTCTTTCTTTTATATGGTTTTCATCGAACAATTGACGAAACGATTGTTATGCTCTGTTTGTATCAAATGTTCCAGAAAAATGTAATCTTTAAGTTTTGATTTTTATAGAATTCATTGTGACAATACATAATATCAATATATTTTTTCTATTACAAAATGTTTGGTTCTATGGAATTTGATCCCAGTCCTCAATCGGATATATTGTAGTTTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCATCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAATACGAAATTCATGAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTG</canonical>
            <polymorphic>TGAGCAAATCGAAACCAGACACAAGAAACTGGTGACCACTATGATGATCCGAAAATAATTTCCCCAGAGCCGGAACATTTGTCTTAAAGTCCTATAACATACGAAAAACACTTGAAAAAACTCAGGGCTGTATTCATGAACATTTACTTTTGTAAATAATTTTCTCTCAAAAATCAACTTCCATTTACCTTTTGGTACATGATTCAGTTGATTTTTTGAGAGTAAATGATTTACAAAAGTAAATTTCATGAATACGGCCTCAGATCTAAAAAGTGTTAGAAACGAAACAGTAATTAAAAAAAACTTTTCTTATGTCATTTTCTTTCTTTTATATGGTTTTCATCGAACAATTGACGAAACGATTGTTATGCTCTGTTTGTATCAAATGTTCCAGAAAAATGTAATCTTTAAGTTTTGATTTTTATAGAATTCATTGTGACAATACATAATATCAATATATTTTTTCTATTACAAAATGTTTGGTTCTATGGAATTTGATYCCAGTCCTCAATCGGATATATTGTAGTTTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAATAATAGTTCTGTTTTCTAAAATTTAACATCCTCTTCCTTTTTTGAATATTTCACAACACTTCCATCGTATTCTGTCCATTTTGCTGGTTTATCGGTGAAAAATATGAAGGACAGAATGTTGGCCTGAAAATGTGTAGAATTATTATTCTCCTTGAAAGAAAAATCGTATTATCTCATAAATCTAATTCTGTCGAATACGAAATTCATGAAACCGGTAACTTACAAAGAATGAGCATCCAGCAAGTGTCATGAATACATGACTCCATTGGGTTTGACTCGATTCGTCGGAGACAAAAAATGCGACAAGAGCGGGACCGGAGAATAGAGAAATACACTTGGTAAATTGGATAGCCGAGATTACGGTAGAGGCGAATTGTCTGGAAAGTTTAGGAGTGTCATTGTCATGAGTGTTACTAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>504 234 217 45</canonical_bands>
                <polymorphic_bands>738 217 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATATGGTTTTCATCGAACAAT</pcr_primer_p1>
		<pcr_primer_p2>TTATTTACGGTTTTCTTTTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTATATGGTTTTCATCGAACAATTGACGAAACGATTGTTATGCTCTGTTTGTATCAAATGTTCCAGAAAAATGTAATCTTTAAGTTTTGATTTTTATAGAATTCATTGTGACAATACATAATATCAATATATTTTTTCTATTACAAAATGTTTGGTTCTATGGAATTTGATCCCAGTCCTCAATCGGATATATTGTAGTTTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAA</canonical_amplicon>
		<polymorphic_amplicon>TTATATGGTTTTCATCGAACAATTGACGAAACGATTGTTATGCTCTGTTTGTATCAAATGTTCCAGAAAAATGTAATCTTTAAGTTTTGATTTTTATAGAATTCATTGTGACAATACATAATATCAATATATTTTTTCTATTACAAAATGTTTGGTTCTATGGAATTTGATYCCAGTCCTCAATCGGATATATTGTAGTTTCGGAAATTGTAGATATTGAAGTTATAAAAGTTGAAAAGAAAACCGTAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30078</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>686744</contig_pos>
        <strand>+</strand>
        <context>TACATCTCTC[A/G]TTTTTTCTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTC</left_flank>
        <right_flank>TTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGTGGACTTTCAATTTTTGAGTAAAATGAAGACTCACCCCATTCCTATCATCAATCGTTACACTGAAATCGTCCTTCATACAAATGAATGTGAAATTTATGATTATATAATTCGAGCATACAGAAACCAAGCACAAAAAACTCATGAGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTTCCACTTGTTTAACTAATATTGCTGTCTCACAACGAAAACTACTGTAATCGGAAAATAACATTGTTTCCCGGTTTTTTTCTTGATTTTTTTCAATCCCCATGTTGATTCTTTTCCATTTAAAAAATTTTTTATTCAGGAATAAATAACAGAAGCATAATATGAACTGAAAATTGAAATGAAATTCTGAAAATAAAAGTAATTTCAGGTTACGGTAGTTTTCTAGTTTTTCTCTTCCACAGCGCTTCAAGTTTATCGTCCGTCACTGTTCAATCCAGAGCTC</canonical>
            <polymorphic>TTGGTGGACTTTCAATTTTTGAGTAAAATGAAGACTCACCCCATTCCTATCATCAATCGTTACACTGAAATCGTCCTTCATACAAATGAATGTGAAATTTATGATTATATAATTCGAGCATACAGAAACCAAGCACAAAAAACTCATGAGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCRTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTTCCACTTGTTTAACTAATATTGCTGTCTCACAACGAAAACTACTGTAATCGGAAAATAACATTGTTTCCCGGTTTTTTTCTTGATTTTTTTCAATCCCCATGTTGATTCTTTTCCATTTAAAAAATTTTTTATTCAGGAATAAATAACAGAAGCATAATATGAACTGAAAATTGAAATGAAATTCTGAAAATAAAAGTAATTTCAGGTTACGGTAGTTTTCTAGTTTTTCTCTTCCACAGCGCTTCAAGTTTATCGTCCGTCACTGTTCAATCCAGAGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCAATGAATTAGGTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAACTCTTCCATTCAACTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>AAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCRTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30079</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>686855</contig_pos>
        <strand>+</strand>
        <context>TTCATRAGAC[C/T]GAAAAGTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGAC</left_flank>
        <right_flank>GAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCGAGCATACAGAAACCAAGCACAAAAAACTCATGAGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTTCCACTTGTTTAACTAATATTGCTGTCTCACAACGAAAACTACTGTAATCGGAAAATAACATTGTTTCCCGGTTTTTTTCTTGATTTTTTTCAATCCCCATGTTGATTCTTTTCCATTTAAAAAATTTTTTATTCAGGAATAAATAACAGAAGCATAATATGAACTGAAAATTGAAATGAAATTCTGAAAATAAAAGTAATTTCAGGTTACGGTAGTTTTCTAGTTTTTCTCTTCCACAGCGCTTCAAGTTTATCGTCCGTCACTGTTCAATCCAGAGCTCTGAATTTTACAGACTAGAAGATAATTTTGACTCTGTAAAACATGAAAACAATGTTTGTGTGAATAATTCCGACTTTAACATTTTTCAATTGGTTTTTTTTTTGAATTTCGG</canonical>
            <polymorphic>ATTCGAGCATACAGAAACCAAGCACAAAAAACTCATGAGCACTATGATGATTCGAAAATAATTTCCCCAAAGTCGCAGCATTATTTTTCGCTGAAAAAATTACAGATTCAAGCATTCTAACTTTTTCAAAACAAATGTAAACTAAAATTTTACAAGGGTAACCACTGAGTATATTTCATCAGTTAAGCATTTTCCAATTTTTTTACAAGTGTACATACAAAATAGATAAATCACCGATGTCTATTTAAAAAGTTACATTTATTAATAAAAATCAATGAATTAGGTCAAAAATCTGTAGAAGACGAAAAAAAGGAAAACAAGTTTCCTTTTGTATCTAAAGAACAAAGATATTAAAGTGATAAATTCACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACYGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTTCCACTTGTTTAACTAATATTGCTGTCTCACAACGAAAACTACTGTAATCGGAAAATAACATTGTTTCCCGGTTTTTTTCTTGATTTTTTTCAATCCCCATGTTGATTCTTTTCCATTTAAAAAATTTTTTATTCAGGAATAAATAACAGAAGCATAATATGAACTGAAAATTGAAATGAAATTCTGAAAATAAAAGTAATTTCAGGTTACGGTAGTTTTCTAGTTTTTCTCTTCCACAGCGCTTCAAGTTTATCGTCCGTCACTGTTCAATCCAGAGCTCTGAATTTTACAGACTAGAAGATAATTTTGACTCTGTAAAACATGAAAACAATGTTTGTGTGAATAATTCCGACTTTAACATTTTTCAATTGGTTTTTTTTTTGAATTTCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATGGTGGTGGTACATCTC</pcr_primer_p1>
		<pcr_primer_p2>CAAGTGGAACAGCAATATTAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACTGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTTCCACTTG</canonical_amplicon>
		<polymorphic_amplicon>ACATGGTGGTGGTACATCTCTCTTTTTTTCTTTTTCTACTTCTTTGGAAAGAACAGAAAACGAATTCGGACGATAAAAAATTTCATTTCCTTGAAGTTTTTGAACAAATTAGCACAATTTTGTTTCATGAGACYGAAAAGTTGAATGGAAGAGTTCAAAGGAATTAAGTTTAGGGACCAAAAAACGTTTGGAAGTTTTCTCGAAACTTTGTAGTTGTATTGTTGTTTAACTAATATTGCTGTTCCACTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30080</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>688211</contig_pos>
        <strand></strand>
        <context>ttgcaagtgc[G/A]gcgtggtgtt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGATTCCCGCCTCCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGC</left_flank>
        <right_flank>GCGTGGTGTTTTAGCGCCACTTGGAGATCATATTTTCTATGAAAATCTCC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTATGTACAAACAAACACACACAGAAATAACCCGCAATTCTGGTCTGATTAGGAGGGAAAATGATGTAACAGCAGAACATTATGAATTTGAGCCTGTTGATGTGACTTCGTCGATGACGTCGTTATGACTATTCAGAATTCCTTCCGACACTTCTGGAGGCGTTTTTCGAACGATGAAGTCGGATGTGCTGGAAACATATTTTTGTAAGAAAATCTACCTAGAGCTGGAAGGTGAAAATATTTTTTCGGTTTCAAATAGATTTAAAGTTAGGATCTAAAGATATGAGATCAATAGCACAATCATTCTGGAAGAACTTTTGTAGTCCAATAGCTACAATAGCGGCCAAGTTTTTAAAACAGTTTAAACTATTTTTCGTTGAAAGTAGCCAAAGTGTACGTCTGGCACTATTGTCGGAAAAAAAGTGGGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTAGCGCCACTTGGAGATCATATTTTCTATGAAAATCTCCTTAAATCCGATGAAACACCGAGTCCCACTTTATTTATTCCGACAATATAATGTTTCAGATTTTGTTCAAAGAGCCTGAAAACTTTTAGGTTTACTACACAAAAAAAGAGCTTCAATTTGGTAGTTAACAATTTTATTCTGCACAAATTCATCCAAATGAGATATACCATTTGAAAACAATCAAGTACCAAGACTTCCAAAGACTTCAGTGATTAAATTTTCGAGCAGTATATCTCGTTTGAAAGAAGTTGTTCAAAAAATTGTCAACTACAAAACTGAAGCCATATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTTCTCCAACAGAATTAATAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAACTGTGAAGTTGAGTACAATGCATCATCTTTCTCACCTGACAATAACAAGTGGAACAAGCAGCAGA</canonical>
            <polymorphic>GTTTTATGTACAAACAAACACACACAGAAATAACCCGCAATTCTGGTCTGATTAGGAGGGAAAATGATGTAACAGCAGAACATTATGAATTTGAGCCTGTTGATGTGACTTCGTCGATGACGTCGTTATGACTATTCAGAATTCCTTCCGACACTTCTGGAGGCGTTTTTCGAACGATGAAGTCGGATGTGCTGGAAACATATTTTTGTAAGAAAATCTACCTAGAGCTGGAAGGTGAAAATATTTTTTCGGTTTCAAATAGATTTAAAGTTAGGATCTAAAGATATGAGATCAATAGCACAATCATTCTGGAAGAACTTTTGTAGTCCAATAGCTACAATAGCGGCCAAGTTTTTAAAACAGTTTAAACTATTTTTCGTTGAAAGTAGCCAAAGTGTACGTCTGGCACTATTGTCGGAAAAAAAGTGGGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCRGCGTGGTGTTTTAGCGCCACTTGGAGATCATATTTTCTATGAAAATCTCCTTAAATCCGATGAAACACCGAGTCCCACTTTATTTATTCCGACAATATAATGTTTCAGATTTTGTTCAAAGAGCCTGAAAACTTTTAGGTTTACTACACAAAAAAAGAGCTTCAATTTGGTAGTTAACAATTTTATTCTGCACAAATTCATCCAAATGAGATATACCATTTGAAAACAATCAAGTACCAAGACTTCCAAAGACTTCAGTGATTAAATTTTCGAGCAGTATATCTCGTTTGAAAGAAGTTGTTCAAAAAATTGTCAACTACAAAACTGAAGCCATATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTTCTCCAACAGAATTAATAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAACTGTGAAGTTGAGTACAATGCATCATCTTTCTCACCTGACAATAACAAGTGGAACAAGCAGCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>499 346 155</canonical_bands>
                <polymorphic_bands>654 346</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAGTAGCCAAAGTGTACGTC</pcr_primer_p1>
		<pcr_primer_p2>CATTGTACTCAACTTCACAGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>574</pcr_amplicon_size>
		<canonical_amplicon>GAAAGTAGCCAAAGTGTACGTCTGGCACTATTGTCGGAAAAAAAGTGGGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTAGCGCCACTTGGAGATCATATTTTCTATGAAAATCTCCTTAAATCCGATGAAACACCGAGTCCCACTTTATTTATTCCGACAATATAATGTTTCAGATTTTGTTCAAAGAGCCTGAAAACTTTTAGGTTTACTACACAAAAAAAGAGCTTCAATTTGGTAGTTAACAATTTTATTCTGCACAAATTCATCCAAATGAGATATACCATTTGAAAACAATCAAGTACCAAGACTTCCAAAGACTTCAGTGATTAAATTTTCGAGCAGTATATCTCGTTTGAAAGAAGTTGTTCAAAAAATTGTCAACTACAAAACTGAAGCCATATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTTCTCCAACAGAATTAATAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAACTGTGAAGTTGAGTACAATG</canonical_amplicon>
		<polymorphic_amplicon>GAAAGTAGCCAAAGTGTACGTCTGGCACTATTGTCGGAAAAAAAGTGGGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCRGCGTGGTGTTTTAGCGCCACTTGGAGATCATATTTTCTATGAAAATCTCCTTAAATCCGATGAAACACCGAGTCCCACTTTATTTATTCCGACAATATAATGTTTCAGATTTTGTTCAAAGAGCCTGAAAACTTTTAGGTTTACTACACAAAAAAAGAGCTTCAATTTGGTAGTTAACAATTTTATTCTGCACAAATTCATCCAAATGAGATATACCATTTGAAAACAATCAAGTACCAAGACTTCCAAAGACTTCAGTGATTAAATTTTCGAGCAGTATATCTCGTTTGAAAGAAGTTGTTCAAAAAATTGTCAACTACAAAACTGAAGCCATATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTTCTCCAACAGAATTAATAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAACTGTGAAGTTGAGTACAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30081</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>688274</contig_pos>
        <strand></strand>
        <context>aaatccgatg[A/G]aacaccgagt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCGCCACTTGGAGATCATATTTTCTATGAAAATCTCCTTAAATCCGATG</left_flank>
        <right_flank>AACACCGAGTCCCACTTTATTTATTCCGACAATATAATGTTTCAGATTTT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGATGTAACAGCAGAACATTATGAATTTGAGCCTGTTGATGTGACTTCGTCGATGACGTCGTTATGACTATTCAGAATTCCTTCCGACACTTCTGGAGGCGTTTTTCGAACGATGAAGTCGGATGTGCTGGAAACATATTTTTGTAAGAAAATCTACCTAGAGCTGGAAGGTGAAAATATTTTTTCGGTTTCAAATAGATTTAAAGTTAGGATCTAAAGATATGAGATCAATAGCACAATCATTCTGGAAGAACTTTTGTAGTCCAATAGCTACAATAGCGGCCAAGTTTTTAAAACAGTTTAAACTATTTTTCGTTGAAAGTAGCCAAAGTGTACGTCTGGCACTATTGTCGGAAAAAAAGTGGGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTAGCGCCACTTGGAGATCATATTTTCTATGAAAATCTCCTTAAATCCGATGAAACACCGAGTCCCACTTTATTTATTCCGACAATATAATGTTTCAGATTTTGTTCAAAGAGCCTGAAAACTTTTAGGTTTACTACACAAAAAAAGAGCTTCAATTTGGTAGTTAACAATTTTATTCTGCACAAATTCATCCAAATGAGATATACCATTTGAAAACAATCAAGTACCAAGACTTCCAAAGACTTCAGTGATTAAATTTTCGAGCAGTATATCTCGTTTGAAAGAAGTTGTTCAAAAAATTGTCAACTACAAAACTGAAGCCATATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTTCTCCAACAGAATTAATAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAACTGTGAAGTTGAGTACAATGCATCATCTTTCTCACCTGACAATAACAAGTGGAACAAGCAGCAGAGCCGCACTGATCAGGTACAGTAATCCTGGGAAGAATTCCAATGTTTTCGGATAGACATTGTTG</canonical>
            <polymorphic>ATGATGTAACAGCAGAACATTATGAATTTGAGCCTGTTGATGTGACTTCGTCGATGACGTCGTTATGACTATTCAGAATTCCTTCCGACACTTCTGGAGGCGTTTTTCGAACGATGAAGTCGGATGTGCTGGAAACATATTTTTGTAAGAAAATCTACCTAGAGCTGGAAGGTGAAAATATTTTTTCGGTTTCAAATAGATTTAAAGTTAGGATCTAAAGATATGAGATCAATAGCACAATCATTCTGGAAGAACTTTTGTAGTCCAATAGCTACAATAGCGGCCAAGTTTTTAAAACAGTTTAAACTATTTTTCGTTGAAAGTAGCCAAAGTGTACGTCTGGCACTATTGTCGGAAAAAAAGTGGGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTAGCGCCACTTGGAGATCATATTTTCTATGAAAATCTCCTTAAATCCGATGRAACACCGAGTCCCACTTTATTTATTCCGACAATATAATGTTTCAGATTTTGTTCAAAGAGCCTGAAAACTTTTAGGTTTACTACACAAAAAAAGAGCTTCAATTTGGTAGTTAACAATTTTATTCTGCACAAATTCATCCAAATGAGATATACCATTTGAAAACAATCAAGTACCAAGACTTCCAAAGACTTCAGTGATTAAATTTTCGAGCAGTATATCTCGTTTGAAAGAAGTTGTTCAAAAAATTGTCAACTACAAAACTGAAGCCATATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTTCTCCAACAGAATTAATAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAACTGTGAAGTTGAGTACAATGCATCATCTTTCTCACCTGACAATAACAAGTGGAACAAGCAGCAGAGCCGCACTGATCAGGTACAGTAATCCTGGGAAGAATTCCAATGTTTTCGGATAGACATTGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGTAGCCAAAGTGTACGTC</pcr_primer_p1>
		<pcr_primer_p2>CATTGTACTCAACTTCACAGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>574</pcr_amplicon_size>
		<canonical_amplicon>GAAAGTAGCCAAAGTGTACGTCTGGCACTATTGTCGGAAAAAAAGTGGGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTAGCGCCACTTGGAGATCATATTTTCTATGAAAATCTCCTTAAATCCGATGAAACACCGAGTCCCACTTTATTTATTCCGACAATATAATGTTTCAGATTTTGTTCAAAGAGCCTGAAAACTTTTAGGTTTACTACACAAAAAAAGAGCTTCAATTTGGTAGTTAACAATTTTATTCTGCACAAATTCATCCAAATGAGATATACCATTTGAAAACAATCAAGTACCAAGACTTCCAAAGACTTCAGTGATTAAATTTTCGAGCAGTATATCTCGTTTGAAAGAAGTTGTTCAAAAAATTGTCAACTACAAAACTGAAGCCATATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTTCTCCAACAGAATTAATAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAACTGTGAAGTTGAGTACAATG</canonical_amplicon>
		<polymorphic_amplicon>GAAAGTAGCCAAAGTGTACGTCTGGCACTATTGTCGGAAAAAAAGTGGGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTAGCGCCACTTGGAGATCATATTTTCTATGAAAATCTCCTTAAATCCGATGRAACACCGAGTCCCACTTTATTTATTCCGACAATATAATGTTTCAGATTTTGTTCAAAGAGCCTGAAAACTTTTAGGTTTACTACACAAAAAAAGAGCTTCAATTTGGTAGTTAACAATTTTATTCTGCACAAATTCATCCAAATGAGATATACCATTTGAAAACAATCAAGTACCAAGACTTCCAAAGACTTCAGTGATTAAATTTTCGAGCAGTATATCTCGTTTGAAAGAAGTTGTTCAAAAAATTGTCAACTACAAAACTGAAGCCATATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTTCTCCAACAGAATTAATAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAACTGTGAAGTTGAGTACAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30082</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>688342</contig_pos>
        <strand></strand>
        <context>gagcctgaaa[A/T]cttttaggtt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATTTATTCCGACAATATAATGTTTCAGATTTTGTTCAAAGAGCCTGAAA</left_flank>
        <right_flank>CTTTTAGGTTTACTACACAAAAAAAGAGCTTCAATTTGGTAGTTAACAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATTCAGAATTCCTTCCGACACTTCTGGAGGCGTTTTTCGAACGATGAAGTCGGATGTGCTGGAAACATATTTTTGTAAGAAAATCTACCTAGAGCTGGAAGGTGAAAATATTTTTTCGGTTTCAAATAGATTTAAAGTTAGGATCTAAAGATATGAGATCAATAGCACAATCATTCTGGAAGAACTTTTGTAGTCCAATAGCTACAATAGCGGCCAAGTTTTTAAAACAGTTTAAACTATTTTTCGTTGAAAGTAGCCAAAGTGTACGTCTGGCACTATTGTCGGAAAAAAAGTGGGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTAGCGCCACTTGGAGATCATATTTTCTATGAAAATCTCCTTAAATCCGATGAAACACCGAGTCCCACTTTATTTATTCCGACAATATAATGTTTCAGATTTTGTTCAAAGAGCCTGAAAACTTTTAGGTTTACTACACAAAAAAAGAGCTTCAATTTGGTAGTTAACAATTTTATTCTGCACAAATTCATCCAAATGAGATATACCATTTGAAAACAATCAAGTACCAAGACTTCCAAAGACTTCAGTGATTAAATTTTCGAGCAGTATATCTCGTTTGAAAGAAGTTGTTCAAAAAATTGTCAACTACAAAACTGAAGCCATATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTTCTCCAACAGAATTAATAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAACTGTGAAGTTGAGTACAATGCATCATCTTTCTCACCTGACAATAACAAGTGGAACAAGCAGCAGAGCCGCACTGATCAGGTACAGTAATCCTGGGAAGAATTCCAATGTTTTCGGATAGACATTGTTGTAAATCGACGTCGCAATTAGTGTGGTGATTCCTTCCAAAAGGGCGATAACCGAGAAGATTTTACCTGT</canonical>
            <polymorphic>CTATTCAGAATTCCTTCCGACACTTCTGGAGGCGTTTTTCGAACGATGAAGTCGGATGTGCTGGAAACATATTTTTGTAAGAAAATCTACCTAGAGCTGGAAGGTGAAAATATTTTTTCGGTTTCAAATAGATTTAAAGTTAGGATCTAAAGATATGAGATCAATAGCACAATCATTCTGGAAGAACTTTTGTAGTCCAATAGCTACAATAGCGGCCAAGTTTTTAAAACAGTTTAAACTATTTTTCGTTGAAAGTAGCCAAAGTGTACGTCTGGCACTATTGTCGGAAAAAAAGTGGGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTAGCGCCACTTGGAGATCATATTTTCTATGAAAATCTCCTTAAATCCGATGAAACACCGAGTCCCACTTTATTTATTCCGACAATATAATGTTTCAGATTTTGTTCAAAGAGCCTGAAAWCTTTTAGGTTTACTACACAAAAAAAGAGCTTCAATTTGGTAGTTAACAATTTTATTCTGCACAAATTCATCCAAATGAGATATACCATTTGAAAACAATCAAGTACCAAGACTTCCAAAGACTTCAGTGATTAAATTTTCGAGCAGTATATCTCGTTTGAAAGAAGTTGTTCAAAAAATTGTCAACTACAAAACTGAAGCCATATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTTCTCCAACAGAATTAATAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAACTGTGAAGTTGAGTACAATGCATCATCTTTCTCACCTGACAATAACAAGTGGAACAAGCAGCAGAGCCGCACTGATCAGGTACAGTAATCCTGGGAAGAATTCCAATGTTTTCGGATAGACATTGTTGTAAATCGACGTCGCAATTAGTGTGGTGATTCCTTCCAAAAGGGCGATAACCGAGAAGATTTTACCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGTAGCCAAAGTGTACGTC</pcr_primer_p1>
		<pcr_primer_p2>CATTGTACTCAACTTCACAGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>574</pcr_amplicon_size>
		<canonical_amplicon>GAAAGTAGCCAAAGTGTACGTCTGGCACTATTGTCGGAAAAAAAGTGGGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTAGCGCCACTTGGAGATCATATTTTCTATGAAAATCTCCTTAAATCCGATGAAACACCGAGTCCCACTTTATTTATTCCGACAATATAATGTTTCAGATTTTGTTCAAAGAGCCTGAAAACTTTTAGGTTTACTACACAAAAAAAGAGCTTCAATTTGGTAGTTAACAATTTTATTCTGCACAAATTCATCCAAATGAGATATACCATTTGAAAACAATCAAGTACCAAGACTTCCAAAGACTTCAGTGATTAAATTTTCGAGCAGTATATCTCGTTTGAAAGAAGTTGTTCAAAAAATTGTCAACTACAAAACTGAAGCCATATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTTCTCCAACAGAATTAATAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAACTGTGAAGTTGAGTACAATG</canonical_amplicon>
		<polymorphic_amplicon>GAAAGTAGCCAAAGTGTACGTCTGGCACTATTGTCGGAAAAAAAGTGGGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTAGCGCCACTTGGAGATCATATTTTCTATGAAAATCTCCTTAAATCCGATGAAACACCGAGTCCCACTTTATTTATTCCGACAATATAATGTTTCAGATTTTGTTCAAAGAGCCTGAAAWCTTTTAGGTTTACTACACAAAAAAAGAGCTTCAATTTGGTAGTTAACAATTTTATTCTGCACAAATTCATCCAAATGAGATATACCATTTGAAAACAATCAAGTACCAAGACTTCCAAAGACTTCAGTGATTAAATTTTCGAGCAGTATATCTCGTTTGAAAGAAGTTGTTCAAAAAATTGTCAACTACAAAACTGAAGCCATATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTTCTCCAACAGAATTAATAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAACTGTGAAGTTGAGTACAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30083</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>688438</contig_pos>
        <strand></strand>
        <context>catttgaaaa[C/A]aatcaagtac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ACAATTTTATTCTGCACAAATTCATCCAAATGAGATATACCATTTGAAAA</left_flank>
        <right_flank>AATCAAGTACCAAGACTTCCAAAGACTTCAGTGATTAAATTTTCGAGCAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGAAGGTGAAAATATTTTTTCGGTTTCAAATAGATTTAAAGTTAGGATCTAAAGATATGAGATCAATAGCACAATCATTCTGGAAGAACTTTTGTAGTCCAATAGCTACAATAGCGGCCAAGTTTTTAAAACAGTTTAAACTATTTTTCGTTGAAAGTAGCCAAAGTGTACGTCTGGCACTATTGTCGGAAAAAAAGTGGGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTAGCGCCACTTGGAGATCATATTTTCTATGAAAATCTCCTTAAATCCGATGAAACACCGAGTCCCACTTTATTTATTCCGACAATATAATGTTTCAGATTTTGTTCAAAGAGCCTGAAAACTTTTAGGTTTACTACACAAAAAAAGAGCTTCAATTTGGTAGTTAACAATTTTATTCTGCACAAATTCATCCAAATGAGATATACCATTTGAAAACAATCAAGTACCAAGACTTCCAAAGACTTCAGTGATTAAATTTTCGAGCAGTATATCTCGTTTGAAAGAAGTTGTTCAAAAAATTGTCAACTACAAAACTGAAGCCATATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTTCTCCAACAGAATTAATAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAACTGTGAAGTTGAGTACAATGCATCATCTTTCTCACCTGACAATAACAAGTGGAACAAGCAGCAGAGCCGCACTGATCAGGTACAGTAATCCTGGGAAGAATTCCAATGTTTTCGGATAGACATTGTTGTAAATCGACGTCGCAATTAGTGTGGTGATTCCTTCCAAAAGGGCGATAACCGAGAAGATTTTACCTGTAAATATGGATGCTTTGGGCTTCCAGAGGAACGTTTTCTGTTACGAAATGTTTTCAAGTGTTTTGAGGCAAATAAAAAGTGGTAGCGTTATAATGAT</canonical>
            <polymorphic>CTGGAAGGTGAAAATATTTTTTCGGTTTCAAATAGATTTAAAGTTAGGATCTAAAGATATGAGATCAATAGCACAATCATTCTGGAAGAACTTTTGTAGTCCAATAGCTACAATAGCGGCCAAGTTTTTAAAACAGTTTAAACTATTTTTCGTTGAAAGTAGCCAAAGTGTACGTCTGGCACTATTGTCGGAAAAAAAGTGGGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTAGCGCCACTTGGAGATCATATTTTCTATGAAAATCTCCTTAAATCCGATGAAACACCGAGTCCCACTTTATTTATTCCGACAATATAATGTTTCAGATTTTGTTCAAAGAGCCTGAAAACTTTTAGGTTTACTACACAAAAAAAGAGCTTCAATTTGGTAGTTAACAATTTTATTCTGCACAAATTCATCCAAATGAGATATACCATTTGAAAAMAATCAAGTACCAAGACTTCCAAAGACTTCAGTGATTAAATTTTCGAGCAGTATATCTCGTTTGAAAGAAGTTGTTCAAAAAATTGTCAACTACAAAACTGAAGCCATATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTTCTCCAACAGAATTAATAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAACTGTGAAGTTGAGTACAATGCATCATCTTTCTCACCTGACAATAACAAGTGGAACAAGCAGCAGAGCCGCACTGATCAGGTACAGTAATCCTGGGAAGAATTCCAATGTTTTCGGATAGACATTGTTGTAAATCGACGTCGCAATTAGTGTGGTGATTCCTTCCAAAAGGGCGATAACCGAGAAGATTTTACCTGTAAATATGGATGCTTTGGGCTTCCAGAGGAACGTTTTCTGTTACGAAATGTTTTCAAGTGTTTTGAGGCAAATAAAAAGTGGTAGCGTTATAATGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGTAGCCAAAGTGTACGTC</pcr_primer_p1>
		<pcr_primer_p2>CATTGTACTCAACTTCACAGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>574</pcr_amplicon_size>
		<canonical_amplicon>GAAAGTAGCCAAAGTGTACGTCTGGCACTATTGTCGGAAAAAAAGTGGGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTAGCGCCACTTGGAGATCATATTTTCTATGAAAATCTCCTTAAATCCGATGAAACACCGAGTCCCACTTTATTTATTCCGACAATATAATGTTTCAGATTTTGTTCAAAGAGCCTGAAAACTTTTAGGTTTACTACACAAAAAAAGAGCTTCAATTTGGTAGTTAACAATTTTATTCTGCACAAATTCATCCAAATGAGATATACCATTTGAAAACAATCAAGTACCAAGACTTCCAAAGACTTCAGTGATTAAATTTTCGAGCAGTATATCTCGTTTGAAAGAAGTTGTTCAAAAAATTGTCAACTACAAAACTGAAGCCATATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTTCTCCAACAGAATTAATAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAACTGTGAAGTTGAGTACAATG</canonical_amplicon>
		<polymorphic_amplicon>GAAAGTAGCCAAAGTGTACGTCTGGCACTATTGTCGGAAAAAAAGTGGGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTAGCGCCACTTGGAGATCATATTTTCTATGAAAATCTCCTTAAATCCGATGAAACACCGAGTCCCACTTTATTTATTCCGACAATATAATGTTTCAGATTTTGTTCAAAGAGCCTGAAAACTTTTAGGTTTACTACACAAAAAAAGAGCTTCAATTTGGTAGTTAACAATTTTATTCTGCACAAATTCATCCAAATGAGATATACCATTTGAAAAMAATCAAGTACCAAGACTTCCAAAGACTTCAGTGATTAAATTTTCGAGCAGTATATCTCGTTTGAAAGAAGTTGTTCAAAAAATTGTCAACTACAAAACTGAAGCCATATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTTCTCCAACAGAATTAATAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAACTGTGAAGTTGAGTACAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30084</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>688524</contig_pos>
        <strand></strand>
        <context>caaaaaattg[T/C]caactacaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAAATTTTCGAGCAGTATATCTCGTTTGAAAGAAGTTGTTCAAAAAATTG</left_flank>
        <right_flank>CAACTACAAAACTGAAGCCATATCACTACTCATTAGAGTTGAAAGTTTTC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAACTTTTGTAGTCCAATAGCTACAATAGCGGCCAAGTTTTTAAAACAGTTTAAACTATTTTTCGTTGAAAGTAGCCAAAGTGTACGTCTGGCACTATTGTCGGAAAAAAAGTGGGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTAGCGCCACTTGGAGATCATATTTTCTATGAAAATCTCCTTAAATCCGATGAAACACCGAGTCCCACTTTATTTATTCCGACAATATAATGTTTCAGATTTTGTTCAAAGAGCCTGAAAACTTTTAGGTTTACTACACAAAAAAAGAGCTTCAATTTGGTAGTTAACAATTTTATTCTGCACAAATTCATCCAAATGAGATATACCATTTGAAAACAATCAAGTACCAAGACTTCCAAAGACTTCAGTGATTAAATTTTCGAGCAGTATATCTCGTTTGAAAGAAGTTGTTCAAAAAATTGTCAACTACAAAACTGAAGCCATATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTTCTCCAACAGAATTAATAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAACTGTGAAGTTGAGTACAATGCATCATCTTTCTCACCTGACAATAACAAGTGGAACAAGCAGCAGAGCCGCACTGATCAGGTACAGTAATCCTGGGAAGAATTCCAATGTTTTCGGATAGACATTGTTGTAAATCGACGTCGCAATTAGTGTGGTGATTCCTTCCAAAAGGGCGATAACCGAGAAGATTTTACCTGTAAATATGGATGCTTTGGGCTTCCAGAGGAACGTTTTCTGTTACGAAATGTTTTCAAGTGTTTTGAGGCAAATAAAAAGTGGTAGCGTTATAATGATAATTACAATGATATGTATTTTTCAAAGATATCTAATTTTTCTGGATTTTTGAAAAATTCAATGGTTGCGTAGAAAACATACCTTGT</canonical>
            <polymorphic>AGAACTTTTGTAGTCCAATAGCTACAATAGCGGCCAAGTTTTTAAAACAGTTTAAACTATTTTTCGTTGAAAGTAGCCAAAGTGTACGTCTGGCACTATTGTCGGAAAAAAAGTGGGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTAGCGCCACTTGGAGATCATATTTTCTATGAAAATCTCCTTAAATCCGATGAAACACCGAGTCCCACTTTATTTATTCCGACAATATAATGTTTCAGATTTTGTTCAAAGAGCCTGAAAACTTTTAGGTTTACTACACAAAAAAAGAGCTTCAATTTGGTAGTTAACAATTTTATTCTGCACAAATTCATCCAAATGAGATATACCATTTGAAAACAATCAAGTACCAAGACTTCCAAAGACTTCAGTGATTAAATTTTCGAGCAGTATATCTCGTTTGAAAGAAGTTGTTCAAAAAATTGYCAACTACAAAACTGAAGCCATATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTTCTCCAACAGAATTAATAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAACTGTGAAGTTGAGTACAATGCATCATCTTTCTCACCTGACAATAACAAGTGGAACAAGCAGCAGAGCCGCACTGATCAGGTACAGTAATCCTGGGAAGAATTCCAATGTTTTCGGATAGACATTGTTGTAAATCGACGTCGCAATTAGTGTGGTGATTCCTTCCAAAAGGGCGATAACCGAGAAGATTTTACCTGTAAATATGGATGCTTTGGGCTTCCAGAGGAACGTTTTCTGTTACGAAATGTTTTCAAGTGTTTTGAGGCAAATAAAAAGTGGTAGCGTTATAATGATAATTACAATGATATGTATTTTTCAAAGATATCTAATTTTTCTGGATTTTTGAAAAATTCAATGGTTGCGTAGAAAACATACCTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>499 362 139</canonical_bands>
                <polymorphic_bands>638 362</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 244 139 84 34</canonical_bands>
                <polymorphic_bands>638 244 84 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAGTAGCCAAAGTGTACGTC</pcr_primer_p1>
		<pcr_primer_p2>CATTGTACTCAACTTCACAGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>574</pcr_amplicon_size>
		<canonical_amplicon>GAAAGTAGCCAAAGTGTACGTCTGGCACTATTGTCGGAAAAAAAGTGGGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTAGCGCCACTTGGAGATCATATTTTCTATGAAAATCTCCTTAAATCCGATGAAACACCGAGTCCCACTTTATTTATTCCGACAATATAATGTTTCAGATTTTGTTCAAAGAGCCTGAAAACTTTTAGGTTTACTACACAAAAAAAGAGCTTCAATTTGGTAGTTAACAATTTTATTCTGCACAAATTCATCCAAATGAGATATACCATTTGAAAACAATCAAGTACCAAGACTTCCAAAGACTTCAGTGATTAAATTTTCGAGCAGTATATCTCGTTTGAAAGAAGTTGTTCAAAAAATTGTCAACTACAAAACTGAAGCCATATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTTCTCCAACAGAATTAATAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAACTGTGAAGTTGAGTACAATG</canonical_amplicon>
		<polymorphic_amplicon>GAAAGTAGCCAAAGTGTACGTCTGGCACTATTGTCGGAAAAAAAGTGGGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTAGCGCCACTTGGAGATCATATTTTCTATGAAAATCTCCTTAAATCCGATGAAACACCGAGTCCCACTTTATTTATTCCGACAATATAATGTTTCAGATTTTGTTCAAAGAGCCTGAAAACTTTTAGGTTTACTACACAAAAAAAGAGCTTCAATTTGGTAGTTAACAATTTTATTCTGCACAAATTCATCCAAATGAGATATACCATTTGAAAACAATCAAGTACCAAGACTTCCAAAGACTTCAGTGATTAAATTTTCGAGCAGTATATCTCGTTTGAAAGAAGTTGTTCAAAAAATTGYCAACTACAAAACTGAAGCCATATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTTCTCCAACAGAATTAATAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAACTGTGAAGTTGAGTACAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30085</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>688581</contig_pos>
        <strand>+</strand>
        <context>tttcagtttt[A/T]tccaacaraa</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAAACTGAAGCCATATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTT</left_flank>
        <right_flank>TCCAACAGAATTAATAACAAACTGACATCTGAAAAAATTCAAAAACTAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTTTCGTTGAAAGTAGCCAAAGTGTACGTCTGGCACTATTGTCGGAAAAAAAGTGGGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTAGCGCCACTTGGAGATCATATTTTCTATGAAAATCTCCTTAAATCCGATGAAACACCGAGTCCCACTTTATTTATTCCGACAATATAATGTTTCAGATTTTGTTCAAAGAGCCTGAAAACTTTTAGGTTTACTACACAAAAAAAGAGCTTCAATTTGGTAGTTAACAATTTTATTCTGCACAAATTCATCCAAATGAGATATACCATTTGAAAACAATCAAGTACCAAGACTTCCAAAGACTTCAGTGATTAAATTTTCGAGCAGTATATCTCGTTTGAAAGAAGTTGTTCAAAAAATTGTCAACTACAAAACTGAAGCCATATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTTCTCCAACAGAATTAATAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAACTGTGAAGTTGAGTACAATGCATCATCTTTCTCACCTGACAATAACAAGTGGAACAAGCAGCAGAGCCGCACTGATCAGGTACAGTAATCCTGGGAAGAATTCCAATGTTTTCGGATAGACATTGTTGTAAATCGACGTCGCAATTAGTGTGGTGATTCCTTCCAAAAGGGCGATAACCGAGAAGATTTTACCTGTAAATATGGATGCTTTGGGCTTCCAGAGGAACGTTTTCTGTTACGAAATGTTTTCAAGTGTTTTGAGGCAAATAAAAAGTGGTAGCGTTATAATGATAATTACAATGATATGTATTTTTCAAAGATATCTAATTTTTCTGGATTTTTGAAAAATTCAATGGTTGCGTAGAAAACATACCTTGTTCTTGAATTTCAATAAGCGATGAGATAAATGCTCGGAATCCGGTAGAGACAAATCGA</canonical>
            <polymorphic>TATTTTTCGTTGAAAGTAGCCAAAGTGTACGTCTGGCACTATTGTCGGAAAAAAAGTGGGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTAGCGCCACTTGGAGATCATATTTTCTATGAAAATCTCCTTAAATCCGATGAAACACCGAGTCCCACTTTATTTATTCCGACAATATAATGTTTCAGATTTTGTTCAAAGAGCCTGAAAACTTTTAGGTTTACTACACAAAAAAAGAGCTTCAATTTGGTAGTTAACAATTTTATTCTGCACAAATTCATCCAAATGAGATATACCATTTGAAAACAATCAAGTACCAAGACTTCCAAAGACTTCAGTGATTAAATTTTCGAGCAGTATATCTCGTTTGAAAGAAGTTGTTCAAAAAATTGTCAACTACAAAACTGAAGCCATATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTTWTCCAACAGAATTAATAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAACTGTGAAGTTGAGTACAATGCATCATCTTTCTCACCTGACAATAACAAGTGGAACAAGCAGCAGAGCCGCACTGATCAGGTACAGTAATCCTGGGAAGAATTCCAATGTTTTCGGATAGACATTGTTGTAAATCGACGTCGCAATTAGTGTGGTGATTCCTTCCAAAAGGGCGATAACCGAGAAGATTTTACCTGTAAATATGGATGCTTTGGGCTTCCAGAGGAACGTTTTCTGTTACGAAATGTTTTCAAGTGTTTTGAGGCAAATAAAAAGTGGTAGCGTTATAATGATAATTACAATGATATGTATTTTTCAAAGATATCTAATTTTTCTGGATTTTTGAAAAATTCAATGGTTGCGTAGAAAACATACCTTGTTCTTGAATTTCAATAAGCGATGAGATAAATGCTCGGAATCCGGTAGAGACAAATCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGTAGCCAAAGTGTACGTC</pcr_primer_p1>
		<pcr_primer_p2>CATTGTACTCAACTTCACAGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>574</pcr_amplicon_size>
		<canonical_amplicon>GAAAGTAGCCAAAGTGTACGTCTGGCACTATTGTCGGAAAAAAAGTGGGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTAGCGCCACTTGGAGATCATATTTTCTATGAAAATCTCCTTAAATCCGATGAAACACCGAGTCCCACTTTATTTATTCCGACAATATAATGTTTCAGATTTTGTTCAAAGAGCCTGAAAACTTTTAGGTTTACTACACAAAAAAAGAGCTTCAATTTGGTAGTTAACAATTTTATTCTGCACAAATTCATCCAAATGAGATATACCATTTGAAAACAATCAAGTACCAAGACTTCCAAAGACTTCAGTGATTAAATTTTCGAGCAGTATATCTCGTTTGAAAGAAGTTGTTCAAAAAATTGTCAACTACAAAACTGAAGCCATATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTTCTCCAACAGAATTAATAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAACTGTGAAGTTGAGTACAATG</canonical_amplicon>
		<polymorphic_amplicon>GAAAGTAGCCAAAGTGTACGTCTGGCACTATTGTCGGAAAAAAAGTGGGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTAGCGCCACTTGGAGATCATATTTTCTATGAAAATCTCCTTAAATCCGATGAAACACCGAGTCCCACTTTATTTATTCCGACAATATAATGTTTCAGATTTTGTTCAAAGAGCCTGAAAACTTTTAGGTTTACTACACAAAAAAAGAGCTTCAATTTGGTAGTTAACAATTTTATTCTGCACAAATTCATCCAAATGAGATATACCATTTGAAAACAATCAAGTACCAAGACTTCCAAAGACTTCAGTGATTAAATTTTCGAGCAGTATATCTCGTTTGAAAGAAGTTGTTCAAAAAATTGTCAACTACAAAACTGAAGCCATATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTTWTCCAACAGAATTAATAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAACTGTGAAGTTGAGTACAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30086</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>688589</contig_pos>
        <strand></strand>
        <context>ttwtccaaca[G/A]aattAAWAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAGCCATATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTTCTCCAACA</left_flank>
        <right_flank>AATTAATAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTG</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGAAAGTAGCCAAAGTGTACGTCTGGCACTATTGTCGGAAAAAAAGTGGGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTAGCGCCACTTGGAGATCATATTTTCTATGAAAATCTCCTTAAATCCGATGAAACACCGAGTCCCACTTTATTTATTCCGACAATATAATGTTTCAGATTTTGTTCAAAGAGCCTGAAAACTTTTAGGTTTACTACACAAAAAAAGAGCTTCAATTTGGTAGTTAACAATTTTATTCTGCACAAATTCATCCAAATGAGATATACCATTTGAAAACAATCAAGTACCAAGACTTCCAAAGACTTCAGTGATTAAATTTTCGAGCAGTATATCTCGTTTGAAAGAAGTTGTTCAAAAAATTGTCAACTACAAAACTGAAGCCATATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTTCTCCAACAGAATTAATAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAACTGTGAAGTTGAGTACAATGCATCATCTTTCTCACCTGACAATAACAAGTGGAACAAGCAGCAGAGCCGCACTGATCAGGTACAGTAATCCTGGGAAGAATTCCAATGTTTTCGGATAGACATTGTTGTAAATCGACGTCGCAATTAGTGTGGTGATTCCTTCCAAAAGGGCGATAACCGAGAAGATTTTACCTGTAAATATGGATGCTTTGGGCTTCCAGAGGAACGTTTTCTGTTACGAAATGTTTTCAAGTGTTTTGAGGCAAATAAAAAGTGGTAGCGTTATAATGATAATTACAATGATATGTATTTTTCAAAGATATCTAATTTTTCTGGATTTTTGAAAAATTCAATGGTTGCGTAGAAAACATACCTTGTTCTTGAATTTCAATAAGCGATGAGATAAATGCTCGGAATCCGGTAGAGACAAATCGATTGAACAT</canonical>
            <polymorphic>GTTGAAAGTAGCCAAAGTGTACGTCTGGCACTATTGTCGGAAAAAAAGTGGGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTAGCGCCACTTGGAGATCATATTTTCTATGAAAATCTCCTTAAATCCGATGAAACACCGAGTCCCACTTTATTTATTCCGACAATATAATGTTTCAGATTTTGTTCAAAGAGCCTGAAAACTTTTAGGTTTACTACACAAAAAAAGAGCTTCAATTTGGTAGTTAACAATTTTATTCTGCACAAATTCATCCAAATGAGATATACCATTTGAAAACAATCAAGTACCAAGACTTCCAAAGACTTCAGTGATTAAATTTTCGAGCAGTATATCTCGTTTGAAAGAAGTTGTTCAAAAAATTGTCAACTACAAAACTGAAGCCATATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTTCTCCAACARAATTAATAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAACTGTGAAGTTGAGTACAATGCATCATCTTTCTCACCTGACAATAACAAGTGGAACAAGCAGCAGAGCCGCACTGATCAGGTACAGTAATCCTGGGAAGAATTCCAATGTTTTCGGATAGACATTGTTGTAAATCGACGTCGCAATTAGTGTGGTGATTCCTTCCAAAAGGGCGATAACCGAGAAGATTTTACCTGTAAATATGGATGCTTTGGGCTTCCAGAGGAACGTTTTCTGTTACGAAATGTTTTCAAGTGTTTTGAGGCAAATAAAAAGTGGTAGCGTTATAATGATAATTACAATGATATGTATTTTTCAAAGATATCTAATTTTTCTGGATTTTTGAAAAATTCAATGGTTGCGTAGAAAACATACCTTGTTCTTGAATTTCAATAAGCGATGAGATAAATGCTCGGAATCCGGTAGAGACAAATCGATTGAACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGTAGCCAAAGTGTACGTC</pcr_primer_p1>
		<pcr_primer_p2>CATTGTACTCAACTTCACAGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>574</pcr_amplicon_size>
		<canonical_amplicon>GAAAGTAGCCAAAGTGTACGTCTGGCACTATTGTCGGAAAAAAAGTGGGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTAGCGCCACTTGGAGATCATATTTTCTATGAAAATCTCCTTAAATCCGATGAAACACCGAGTCCCACTTTATTTATTCCGACAATATAATGTTTCAGATTTTGTTCAAAGAGCCTGAAAACTTTTAGGTTTACTACACAAAAAAAGAGCTTCAATTTGGTAGTTAACAATTTTATTCTGCACAAATTCATCCAAATGAGATATACCATTTGAAAACAATCAAGTACCAAGACTTCCAAAGACTTCAGTGATTAAATTTTCGAGCAGTATATCTCGTTTGAAAGAAGTTGTTCAAAAAATTGTCAACTACAAAACTGAAGCCATATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTTCTCCAACAGAATTAATAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAACTGTGAAGTTGAGTACAATG</canonical_amplicon>
		<polymorphic_amplicon>GAAAGTAGCCAAAGTGTACGTCTGGCACTATTGTCGGAAAAAAAGTGGGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTAGCGCCACTTGGAGATCATATTTTCTATGAAAATCTCCTTAAATCCGATGAAACACCGAGTCCCACTTTATTTATTCCGACAATATAATGTTTCAGATTTTGTTCAAAGAGCCTGAAAACTTTTAGGTTTACTACACAAAAAAAGAGCTTCAATTTGGTAGTTAACAATTTTATTCTGCACAAATTCATCCAAATGAGATATACCATTTGAAAACAATCAAGTACCAAGACTTCCAAAGACTTCAGTGATTAAATTTTCGAGCAGTATATCTCGTTTGAAAGAAGTTGTTCAAAAAATTGTCAACTACAAAACTGAAGCCATATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTTCTCCAACARAATTAATAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAACTGTGAAGTTGAGTACAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30087</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>688596</contig_pos>
        <strand></strand>
        <context>acaraattAA[T/A]AACAAACTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTTCTCCAACAGAATTAA</left_flank>
        <right_flank>AACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAGCCAAAGTGTACGTCTGGCACTATTGTCGGAAAAAAAGTGGGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTAGCGCCACTTGGAGATCATATTTTCTATGAAAATCTCCTTAAATCCGATGAAACACCGAGTCCCACTTTATTTATTCCGACAATATAATGTTTCAGATTTTGTTCAAAGAGCCTGAAAACTTTTAGGTTTACTACACAAAAAAAGAGCTTCAATTTGGTAGTTAACAATTTTATTCTGCACAAATTCATCCAAATGAGATATACCATTTGAAAACAATCAAGTACCAAGACTTCCAAAGACTTCAGTGATTAAATTTTCGAGCAGTATATCTCGTTTGAAAGAAGTTGTTCAAAAAATTGTCAACTACAAAACTGAAGCCATATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTTCTCCAACAGAATTAATAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAACTGTGAAGTTGAGTACAATGCATCATCTTTCTCACCTGACAATAACAAGTGGAACAAGCAGCAGAGCCGCACTGATCAGGTACAGTAATCCTGGGAAGAATTCCAATGTTTTCGGATAGACATTGTTGTAAATCGACGTCGCAATTAGTGTGGTGATTCCTTCCAAAAGGGCGATAACCGAGAAGATTTTACCTGTAAATATGGATGCTTTGGGCTTCCAGAGGAACGTTTTCTGTTACGAAATGTTTTCAAGTGTTTTGAGGCAAATAAAAAGTGGTAGCGTTATAATGATAATTACAATGATATGTATTTTTCAAAGATATCTAATTTTTCTGGATTTTTGAAAAATTCAATGGTTGCGTAGAAAACATACCTTGTTCTTGAATTTCAATAAGCGATGAGATAAATGCTCGGAATCCGGTAGAGACAAATCGATTGAACATGACGATA</canonical>
            <polymorphic>GTAGCCAAAGTGTACGTCTGGCACTATTGTCGGAAAAAAAGTGGGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTAGCGCCACTTGGAGATCATATTTTCTATGAAAATCTCCTTAAATCCGATGAAACACCGAGTCCCACTTTATTTATTCCGACAATATAATGTTTCAGATTTTGTTCAAAGAGCCTGAAAACTTTTAGGTTTACTACACAAAAAAAGAGCTTCAATTTGGTAGTTAACAATTTTATTCTGCACAAATTCATCCAAATGAGATATACCATTTGAAAACAATCAAGTACCAAGACTTCCAAAGACTTCAGTGATTAAATTTTCGAGCAGTATATCTCGTTTGAAAGAAGTTGTTCAAAAAATTGTCAACTACAAAACTGAAGCCATATCACTACTCATTAGAGTTGAAAGTTTTCAGTTTTCTCCAACAGAATTAAWAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAACTGTGAAGTTGAGTACAATGCATCATCTTTCTCACCTGACAATAACAAGTGGAACAAGCAGCAGAGCCGCACTGATCAGGTACAGTAATCCTGGGAAGAATTCCAATGTTTTCGGATAGACATTGTTGTAAATCGACGTCGCAATTAGTGTGGTGATTCCTTCCAAAAGGGCGATAACCGAGAAGATTTTACCTGTAAATATGGATGCTTTGGGCTTCCAGAGGAACGTTTTCTGTTACGAAATGTTTTCAAGTGTTTTGAGGCAAATAAAAAGTGGTAGCGTTATAATGATAATTACAATGATATGTATTTTTCAAAGATATCTAATTTTTCTGGATTTTTGAAAAATTCAATGGTTGCGTAGAAAACATACCTTGTTCTTGAATTTCAATAAGCGATGAGATAAATGCTCGGAATCCGGTAGAGACAAATCGATTGAACATGACGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAGTAGCCAAAGTGTACGTC</pcr_primer_p1>
		<pcr_primer_p2>CATTGTACTCAACTTCACAGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>574</pcr_amplicon_size>
		<canonical_amplicon>ATAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAACTGTGAAGTTGAGTACAATG</canonical_amplicon>
		<polymorphic_amplicon>AWAACAAACTGACATCTGAAAAAATTCAAAAACTAATATTTTGTGTGCGAAACTGTGAAGTTGAGTACAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30088</snp_id>
        <super_contig>c005100830.Contig1</super_contig>
        <contig_pos>760228</contig_pos>
        <strand>+</strand>
        <context>GGGAAGAAGG[C/G]TGAAGAAGGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGGCGATTCGAGGTGGTTTCTGTTTGCTAACGAAGAGTTTGGGAAGAAGG</left_flank>
        <right_flank>TGAAGAAGGGGCGGAGACTTTGTGGTGTCTTGCTGGAGTGAATAAGACAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGGTTTTTGAAAAATTTCAGACACACATTTTCTCCCAATAATCCGACCTTCATTTGTAAATATATTCAAATTGTTAGCCTATTCTTATACAGTTTGAAACCTATTCAACAACACCTGCATTTACAATCTGCCATCATGATTCCACTTTGTTAGTCTCCACCCAAAAAAAGAGAAAGTCTTCTCTCTTTCTTTCTCCACTCTCTCCGATCTTCCTACTATCTCTCCAATCCCCCCCAGATAGCGACACTATCCGCCCCGCGCGGCGCCCTTGGTACGCCAAACACCTCTGCCGCTTCTCTGCACTCTCTCGTCTCCCCACACTATTTTTCCTCAACGGACTGTTTGTCCGATGGGCGCAAGCGCCTTCACCACTTGGTGTCTAGTCACTTTGCCCAAGGCCATTCTGATCAGATTGTCTGCGTCTCTCGGGTCCTGTGTACTATTTCGTGGCGATTCGAGGTGGTTTCTGTTTGCTAACGAAGAGTTTGGGAAGAAGGCTGAAGAAGGGGCGGAGACTTTGTGGTGTCTTGCTGGAGTGAATAAGACATCAGTTTTATTATAGTGGTCGAGAGAGGTGTGGTGTCTTTTGGTGAATTTAGGATTAGAAGGTGTTGATGTAAACACTCTAATAGAAGGTGTCCTGTTTTGAGCCAATTTATATCGATTCTTGTAACAGATATTGGAAATTGGTCAACTGATAAAATGTTTTTGAAGTTATAATGAGTATTTTATCAGTGAACAACTTTTTGATATATTTTACAGGAGCAGAGATAAAGTGGCTCAAAGTGCAAGTATAGGGTGGCCTTCTATTAGAGTGTTTGAGGTGTTTGATTTTTGAGCTTGGAGACAGTATTGGCTCTTAAGTTAGTTAAAAGGTTCTCAATATCAATGATAACAGAGATTACTGATCAAGAACTAGAAAAAGCTTATATTATGGTCCCACAATGACAATTACCGTAACCTAAGAATATTGTTTTCCGGATTTATTTTCTTGTTTT</canonical>
            <polymorphic>TTTGGTTTTTGAAAAATTTCAGACACACATTTTCTCCCAATAATCCGACCTTCATTTGTAAATATATTCAAATTGTTAGCCTATTCTTATACAGTTTGAAACCTATTCAACAACACCTGCATTTACAATCTGCCATCATGATTCCACTTTGTTAGTCTCCACCCAAAAAAAGAGAAAGTCTTCTCTCTTTCTTTCTCCACTCTCTCCGATCTTCCTACTATCTCTCCAATCCCCCCCAGATAGCGACACTATCCGCCCCGCGCGGCGCCCTTGGTACGCCAAACACCTCTGCCGCTTCTCTGCACTCTCTCGTCTCCCCACACTATTTTTCCTCAACGGACTGTTTGTCCGATGGGCGCAAGCGCCTTCACCACTTGGTGTCTAGTCACTTTGCCCAAGGCCATTCTGATCAGATTGTCTGCGTCTCTCGGGTCCTGTGTACTATTTCGTGGCGATTCGAGGTGGTTTCTGTTTGCTAACGAAGAGTTTGGGAAGAAGGSTGAAGAAGGGGCGGAGACTTTGTGGTGTCTTGCTGGAGTGAATAAGACATCAGTTTTATTATAGTGGTCGAGAGAGGTGTGGTGTCTTTTGGTGAATTTAGGATTAGAAGGTGTTGATGTAAACACTCTAATAGAAGGTGTCCTGTTTTGAGCCAATTTATATCGATTCTTGTAACAGATATTGGAAATTGGTCAACTGATAAAATGTTTTTGAAGTTATAATGAGTATTTTATCAGTGAACAACTTTTTGATATATTTTACAGGAGCAGAGATAAAGTGGCTCAAAGTGCAAGTATAGGGTGGCCTTCTATTAGAGTGTTTGAGGTGTTTGATTTTTGAGCTTGGAGACAGTATTGGCTCTTAAGTTAGTTAAAAGGTTCTCAATATCAATGATAACAGAGATTACTGATCAAGAACTAGAAAAAGCTTATATTATGGTCCCACAATGACAATTACCGTAACCTAAGAATATTGTTTTCCGGATTTATTTTCTTGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>321 153 129 99 79 73 69 37 23 17</canonical_bands>
                <polymorphic_bands>321 252 129 79 73 69 37 23 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTATTTTTCCTCAACGGACT</pcr_primer_p1>
		<pcr_primer_p2>TCGACCACTATAATAAAACTGATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTATTTTTCCTCAACGGACTGTTTGTCCGATGGGCGCAAGCGCCTTCACCACTTGGTGTCTAGTCACTTTGCCCAAGGCCATTCTGATCAGATTGTCTGCGTCTCTCGGGTCCTGTGTACTATTTCGTGGCGATTCGAGGTGGTTTCTGTTTGCTAACGAAGAGTTTGGGAAGAAGGCTGAAGAAGGGGCGGAGACTTTGTGGTGTCTTGCTGGAGTGAATAAGACATCAGTTTTATTATAGTGGTCGA</canonical_amplicon>
		<polymorphic_amplicon>ACTATTTTTCCTCAACGGACTGTTTGTCCGATGGGCGCAAGCGCCTTCACCACTTGGTGTCTAGTCACTTTGCCCAAGGCCATTCTGATCAGATTGTCTGCGTCTCTCGGGTCCTGTGTACTATTTCGTGGCGATTCGAGGTGGTTTCTGTTTGCTAACGAAGAGTTTGGGAAGAAGGSTGAAGAAGGGGCGGAGACTTTGTGGTGTCTTGCTGGAGTGAATAAGACATCAGTTTTATTATAGTGGTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30089</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>25583</contig_pos>
        <strand></strand>
        <context>TCCTATCTAG[G/A]CATCCCTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTTTGGATTTTGATGAAATGTTCAGTATATGTCAAGGATATCCTATCTAG</left_flank>
        <right_flank>CATCCCTGAAAATTTTAGAACACGCTCGCCACTTTCAGCCGAGTTATATC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTACAGTTTTTTAGATTTTTGAATTTTTTGAAAAGAAAATTAGCGTTTTTCTAATAGGAAAAAAAAGAAAAATTTTCATTTTGATACTTGAATGTTTAAAAAATCCCGGAAATCCTTAAATTCCCAAATTTTGGAAATTGGACTGTTCCGAAGATTTCGAAAACAAAAAAGTTTTGGAAATAAGAATATCCCGGATATCTGAAAATCCGAAACTATAAAAATCGGTATATTCTAAAATCTCTAATTTCCAATTTTTTCAGAATCTGAATTTTTAATTTGAAAATCCAAAAAGGCCTTTTCGTATTTCTGAGCGGCTGCCCGATTTATTCAAAACATCAGATTTGAGTACATCAAGAAAAAGTTGCTCAATTCAAAGGATCTTCCGTCAGTCTGAAAACTGATGCGGAAAGCTTGGAGATCTTACAAGGGAACCACAACACCTCGTCAGTTTGGATTTTGATGAAATGTTCAGTATATGTCAAGGATATCCTATCTAGGCATCCCTGAAAATTTTAGAACACGCTCGCCACTTTCAGCCGAGTTATATCAGTTTCTGTACCAAAAATCGCGTTTTCAGTGCAAAAATAGCGATTTTCAAAGGCGATTTTCTCCGCTCCCAGGAGGTTCCAGAACATGAAACTTGATTTGCTACACTCAGAATTATGTGTGATATCATTATTCAGACATTTTCTGAAAAAAAAATTTTCGAAAAAATTTTTTCTACCATTTGGGTGGGTGATATTATCGAGCTTTTGTCAATTTGGAAAATCCTTAAAAAAGTAGTGATAATTGTTTGCAAATATTATTTTACAACTGATAGATAGTCTATTTTTGATTGCACGCTTTTCATTATTCATTCATGGTCCGTATAGGTCCAAAAACAAAGCTTCAAAACCACCACATTCCAGTGATTGAATAATTCGAAAAATTTTTGAAAATTTTTTTTCTAAAATTTGTCTCTACTCTTTTGAATTGATAAAATTTTGAAACATATGTCA</canonical>
            <polymorphic>CACTACAGTTTTTTAGATTTTTGAATTTTTTGAAAAGAAAATTAGCGTTTTTCTAATAGGAAAAAAAAGAAAAATTTTCATTTTGATACTTGAATGTTTAAAAAATCCCGGAAATCCTTAAATTCCCAAATTTTGGAAATTGGACTGTTCCGAAGATTTCGAAAACAAAAAAGTTTTGGAAATAAGAATATCCCGGATATCTGAAAATCCGAAACTATAAAAATCGGTATATTCTAAAATCTCTAATTTCCAATTTTTTCAGAATCTGAATTTTTAATTTGAAAATCCAAAAAGGCCTTTTCGTATTTCTGAGCGGCTGCCCGATTTATTCAAAACATCAGATTTGAGTACATCAAGAAAAAGTTGCTCAATTCAAAGGATCTTCCGTCAGTCTGAAAACTGATGCGGAAAGCTTGGAGATCTTACAAGGGAACCACAACACCTCGTCAGTTTGGATTTTGATGAAATGTTCAGTATATGTCAAGGATATCCTATCTAGRCATCCCTGAAAATTTTAGAACACGCTCGCCACTTTCAGCCGAGTTATATCAGTTTCTGTACCAAAAATCGCGTTTTCAGTGCAAAAATAGCGATTTTCAAAGGCGATTTTCTCCGCTCCCAGGAGGTTCCAGAACATGAAACTTGATTTGCTACACTCAGAATTATGTGTGATATCATTATTCAGACATTTTCTGAAAAAAAAATTTTCGAAAAAATTTTTTCTACCATTTGGGTGGGTGATATTATCGAGCTTTTGTCAATTTGGAAAATCCTTAAAAAAGTAGTGATAATTGTTTGCAAATATTATTTTACAACTGATAGATAGTCTATTTTTGATTGCACGCTTTTCATTATTCATTCATGGTCCGTATAGGTCCAAAAACAAAGCTTCAAAACCACCACATTCCAGTGATTGAATAATTCGAAAAATTTTTGAAAATTTTTTTTCTAAAATTTGTCTCTACTCTTTTGAATTGATAAAATTTTGAAACATATGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTTGGATTTTGATGAAATGT</pcr_primer_p1>
		<pcr_primer_p2>GCCAATTTCAGCAGAGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>803</pcr_amplicon_size>
		<canonical_amplicon>AGTTTGGATTTTGATGAAATGTTCAGTATATGTCAAGGATATCCTATCTAGGCATCCCTGAAAATTTTAGA</canonical_amplicon>
		<polymorphic_amplicon>AGTTTGGATTTTGATGAAATGTTCAGTATATGTCAAGGATATCCTATCTAGRCATCCCTGAAAATTTTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30090</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>28161</contig_pos>
        <strand>+</strand>
        <context>TCACTTATTT[A/C]TTCARAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTTTGTCTTCTTCGTCAGTGTCTGTCTCTCTTCACACTTTCACTTATTT</left_flank>
        <right_flank>TTCAGAAAAACATAACCTACAGTACCCACCCAAAATCAACAGAATTCTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGAGGATGGGAACAAAGGGGATAAGTACTTCATTTGTCTGGTTTTGTGTTTCGGAGAATGAGAAGTTGAAAAATTACCGAAATGGACTGATGGAAGAATTTTTGATCCAGAACAATTTCCAAAAAAACATTTTACGGGAATTTTTGTTCTAGAAAATTGAGCAAATTGGGTTTAAATTGAATTTCTTAAAATTTTTACGTCAAGTTTTGTATATTTCTTTAAGTTTCTCATAGGTTATGATGAATCCTCTTCACGAACCACAAAAAGGCAAACAATAGTCAAAAATTGGATAAATCGGGAAAAAATGATGAAAAATTTTTAAGAAAATTCCTGTCGAGAAAAGTTATCGAAATTTTTCGGGAAATCCGAAAGACTGGGGTTCCCAACTTCTCGATTTGAACAAATCTGGTCCCTACAATAAGTTCAAAAGTCTAGAACGCCTCTCGATCTTTGTCTTCTTCGTCAGTGTCTGTCTCTCTTCACACTTTCACTTATTTCTTCAGAAAAACATAACCTACAGTACCCACCCAAAATCAACAGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAAGAATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGATAAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTTGTTAAAAGTGCAACCTCCGGGTGAAAAAAATTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGTAGAATTTCAAAATAAGTCAACACTC</canonical>
            <polymorphic>GAAGAGGATGGGAACAAAGGGGATAAGTACTTCATTTGTCTGGTTTTGTGTTTCGGAGAATGAGAAGTTGAAAAATTACCGAAATGGACTGATGGAAGAATTTTTGATCCAGAACAATTTCCAAAAAAACATTTTACGGGAATTTTTGTTCTAGAAAATTGAGCAAATTGGGTTTAAATTGAATTTCTTAAAATTTTTACGTCAAGTTTTGTATATTTCTTTAAGTTTCTCATAGGTTATGATGAATCCTCTTCACGAACCACAAAAAGGCAAACAATAGTCAAAAATTGGATAAATCGGGAAAAAATGATGAAAAATTTTTAAGAAAATTCCTGTCGAGAAAAGTTATCGAAATTTTTCGGGAAATCCGAAAGACTGGGGTTCCCAACTTCTCGATTTGAACAAATCTGGTCCCTACAATAAGTTCAAAAGTCTAGAACGCCTCTCGATCTTTGTCTTCTTCGTCAGTGTCTGTCTCTCTTCACACTTTCACTTATTTMTTCAGAAAAACATAACCTACAGTACCCACCCAAAATCAACAGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAAGAATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGATAAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTTGTTAAAAGTGCAACCTCCGGGTGAAAAAAATTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGTAGAATTTCAAAATAAGTCAACACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCCTACAATAAGTTCAAAAGTC</pcr_primer_p1>
		<pcr_primer_p2>TAATTCATCCAACCTTTTGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCCCTACAATAAGTTCAAAAGTCTAGAACGCCTCTCGATCTTTGTCTTCTTCGTCAGTGTCTGTCTCTCTTCACACTTTCACTTATTTCTTCAGAAAAACATAACCTACAGTACCCACCCAAAATCAACAGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTA</canonical_amplicon>
		<polymorphic_amplicon>TCCCTACAATAAGTTCAAAAGTCTAGAACGCCTCTCGATCTTTGTCTTCTTCGTCAGTGTCTGTCTCTCTTCACACTTTCACTTATTTMTTCAGAAAAACATAACCTACAGTACCCACCCAAAATCAACAGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30091</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>28497</contig_pos>
        <strand>+</strand>
        <context>GTAGACAGGG[C/G]TTATGGGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGG</left_flank>
        <right_flank>TTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGAAAAGTTATCGAAATTTTTCGGGAAATCCGAAAGACTGGGGTTCCCAACTTCTCGATTTGAACAAATCTGGTCCCTACAATAAGTTCAAAAGTCTAGAACGCCTCTCGATCTTTGTCTTCTTCGTCAGTGTCTGTCTCTCTTCACACTTTCACTTATTTCTTCAGAAAAACATAACCTACAGTACCCACCCAAAATCAACAGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAAGAATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGATAAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTTGTTAAAAGTGCAACCTCCGGGTGAAAAAAATTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGTAGAATTTCAAAATAAGTCAACACTCAATTTTGAAAAAAAAACAAAAAAGTGGGTTAAAAGTTCCAGAGGTAGAGAAATCTTAAAGCTAAATCTAGATTTAGGTGATCGTGAAAAATGATAAAACACTGGGTGGTTTGAATTTTTAGTGGGCGGAATTTTTTCGAACGAGGTTTTTGGGGATATTGGATACAGCTAGAATTATCTTGCGAAGCTAATGAAAAATCAGATTTCCCAATAAAAATTGTCTTTGATTCCCATAAAAATTTGCTTCTTATTAATGGATGGCAGTACACAAAAAGAAACGTTGAAACCAGATAATCCGATTAATGAAGAAGCAATAAAATTGATATTGGGAGGTCTC</canonical>
            <polymorphic>CGAGAAAAGTTATCGAAATTTTTCGGGAAATCCGAAAGACTGGGGTTCCCAACTTCTCGATTTGAACAAATCTGGTCCCTACAATAAGTTCAAAAGTCTAGAACGCCTCTCGATCTTTGTCTTCTTCGTCAGTGTCTGTCTCTCTTCACACTTTCACTTATTTCTTCAGAAAAACATAACCTACAGTACCCACCCAAAATCAACAGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAAGAATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGATAAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGSTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTTGTTAAAAGTGCAACCTCCGGGTGAAAAAAATTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGTAGAATTTCAAAATAAGTCAACACTCAATTTTGAAAAAAAAACAAAAAAGTGGGTTAAAAGTTCCAGAGGTAGAGAAATCTTAAAGCTAAATCTAGATTTAGGTGATCGTGAAAAATGATAAAACACTGGGTGGTTTGAATTTTTAGTGGGCGGAATTTTTTCGAACGAGGTTTTTGGGGATATTGGATACAGCTAGAATTATCTTGCGAAGCTAATGAAAAATCAGATTTCCCAATAAAAATTGTCTTTGATTCCCATAAAAATTTGCTTCTTATTAATGGATGGCAGTACACAAAAAGAAACGTTGAAACCAGATAATCCGATTAATGAAGAAGCAATAAAATTGATATTGGGAGGTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAAAGGTTGGATGAATTATTA</pcr_primer_p1>
		<pcr_primer_p2>AACAAATTTATTCTCATCGCTAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAAGAATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGATAAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTTGTT</canonical_amplicon>
		<polymorphic_amplicon>ACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAAGAATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGATAAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGSTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30092</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>28637</contig_pos>
        <strand>+</strand>
        <context>AAAAGGGAGT[A/T]GAATTTCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGT</left_flank>
        <right_flank>GAATTTCAAAATAAGTCAACACTCAATTTTGAAAAAAAAACAAAAAAGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCTTCACACTTTCACTTATTTCTTCAGAAAAACATAACCTACAGTACCCACCCAAAATCAACAGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAAGAATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGATAAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTTGTTAAAAGTGCAACCTCCGGGTGAAAAAAATTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGTAGAATTTCAAAATAAGTCAACACTCAATTTTGAAAAAAAAACAAAAAAGTGGGTTAAAAGTTCCAGAGGTAGAGAAATCTTAAAGCTAAATCTAGATTTAGGTGATCGTGAAAAATGATAAAACACTGGGTGGTTTGAATTTTTAGTGGGCGGAATTTTTTCGAACGAGGTTTTTGGGGATATTGGATACAGCTAGAATTATCTTGCGAAGCTAATGAAAAATCAGATTTCCCAATAAAAATTGTCTTTGATTCCCATAAAAATTTGCTTCTTATTAATGGATGGCAGTACACAAAAAGAAACGTTGAAACCAGATAATCCGATTAATGAAGAAGCAATAAAATTGATATTGGGAGGTCTCTATCTTCTGTGGAGAAGTTATAATTGCCTATCCGATATCTATATCAATATCAGAGAATTCGTATCGAATATCTTATTCTACTACCCGAAAGAAATCTCACTTTCGGATTCCGAAATATTCTCGCCTCTTGTATCTGATAT</canonical>
            <polymorphic>TCTCTTCACACTTTCACTTATTTCTTCAGAAAAACATAACCTACAGTACCCACCCAAAATCAACAGAATTCTGTTCTCTCGTCATCACTTTCTAATGCCAACCTACTAACCAGGATAAACTGATCAAACTTGTGATCAAAAGGCAACTGTCGATTTCAACGACTAAACAAAAGGTTGGATGAATTATTACCCTATTTTCTTCCAAGAATCTGACAGGTCCAACGGTTCATTGTAGCCAGCGCACCCCTCAAAATTTTGTGTAATTTCCTGTTATGATAAGGCGACACTTTTCTCTCCTATCCCATTCTTTTTTCCTTGACTACCGTATCTTTTTTCCCCATTAACGGCTGTAGACAGGGTTTATGGGTTTGCACTTCCGTAAATGTTCACCTTAGCGATGAGAATAAATTTGTTAAAAGTGCAACCTCCGGGTGAAAAAAATTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGTWGAATTTCAAAATAAGTCAACACTCAATTTTGAAAAAAAAACAAAAAAGTGGGTTAAAAGTTCCAGAGGTAGAGAAATCTTAAAGCTAAATCTAGATTTAGGTGATCGTGAAAAATGATAAAACACTGGGTGGTTTGAATTTTTAGTGGGCGGAATTTTTTCGAACGAGGTTTTTGGGGATATTGGATACAGCTAGAATTATCTTGCGAAGCTAATGAAAAATCAGATTTCCCAATAAAAATTGTCTTTGATTCCCATAAAAATTTGCTTCTTATTAATGGATGGCAGTACACAAAAAGAAACGTTGAAACCAGATAATCCGATTAATGAAGAAGCAATAAAATTGATATTGGGAGGTCTCTATCTTCTGTGGAGAAGTTATAATTGCCTATCCGATATCTATATCAATATCAGAGAATTCGTATCGAATATCTTATTCTACTACCCGAAAGAAATCTCACTTTCGGATTCCGAAATATTCTCGCCTCTTGTATCTGATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGATGAGAATAAATTTGTTAAA</pcr_primer_p1>
		<pcr_primer_p2>TAAAAATTCAAACCACCCAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCGATGAGAATAAATTTGTTAAAAGTGCAACCTCCGGGTGAAAAAAATTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGTAGAATTTCAAAATAAGTCAACACTCAATTTTGAAAAAAAAACAAAAAAGTGGGTTAAAAGTTCCAGAGGTAGAGAAATCTTAAAGCTAAATCTAGATTTAGGTGATCGTGAAAAATGATAAAACACTGGGTGGTTTGAATTTTTA</canonical_amplicon>
		<polymorphic_amplicon>GCGATGAGAATAAATTTGTTAAAAGTGCAACCTCCGGGTGAAAAAAATTAAAAGTGCAAATGAAATATAAGAGGAGCGAAAAGAAAGGCGCGAAAAAAAGGGAGTWGAATTTCAAAATAAGTCAACACTCAATTTTGAAAAAAAAACAAAAAAGTGGGTTAAAAGTTCCAGAGGTAGAGAAATCTTAAAGCTAAATCTAGATTTAGGTGATCGTGAAAAATGATAAAACACTGGGTGGTTTGAATTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30093</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>31288</contig_pos>
        <strand>+</strand>
        <context>AACTTCTGGA[A/C]CATTACCTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTATGATGTCGCAATCTGTCTAGGGGTGTTTAAAAAGCCGAACTTCTGGA</left_flank>
        <right_flank>CATTACCTGATAAGATCCATCGATGGTGGAAGATCATCCGGAAAACTGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGATTGAAAAATGAAAAATCGAGATAGTTTTCTCTAGTTTTGTCACAAAATTCCGTGAGTTATCTGAATCAAATATCGTGCCTCCTACCGAAACAAATGGACATTGACCCTTTGGTGTTCCCGCTTCTTCTTCGTCTTCTTTTTGTTTCTAAAAATCAGGGATTCAATCCCCCCCTTCTTTCCAAATTGTTTATTTATTTATGTATGTACAAGGGCATTTTTGACGAAGAGAGAGAATGCGAATCGGATGAAGAAAAAGAAGAACGCCGCACGTTTACGACTAGGAAGATGGGGGCGAAACAGAAGCAAAGATGAAACAAATGAGTGGTGCGGTATTGGCAAAACGATCGAGCAACTCATTGAAAGTGTGAACAAAAGATGCCGCAGTGAGAATAGGTAACTTGACACGATATGCACAATCTCGATTTTACGGAACATCCGATAGAATCTATGATGTCGCAATCTGTCTAGGGGTGTTTAAAAAGCCGAACTTCTGGAACATTACCTGATAAGATCCATCGATGGTGGAAGATCATCCGGAAAACTGTCCCAGGAAATATCCGACGCGGTATCAAACGCAGAGTCGACGTTTGATAAGCAACTCATTATCTCAGAGTATATCAACAAACGAATAGCTGGCTTGAATTTTCCTGATTTTTTTTGAATGAATACCAATTAGTTCAAACAAACAGTGTGGAAAACACAAAAAAGTACAAAAGAGGGCGGGATTGACAGAGCACATGTTCACGAGACCTGGTGACGAAAAGACAAAAAAGGTGCCGCCGGTAGTGGAAAAGAAAAGTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAGGGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCCAGGAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTAGACAAATCATTTTACCAGGTATCCAGATAAATTAAGTCAAGGCAGACAGAGC</canonical>
            <polymorphic>ATGATTGAAAAATGAAAAATCGAGATAGTTTTCTCTAGTTTTGTCACAAAATTCCGTGAGTTATCTGAATCAAATATCGTGCCTCCTACCGAAACAAATGGACATTGACCCTTTGGTGTTCCCGCTTCTTCTTCGTCTTCTTTTTGTTTCTAAAAATCAGGGATTCAATCCCCCCCTTCTTTCCAAATTGTTTATTTATTTATGTATGTACAAGGGCATTTTTGACGAAGAGAGAGAATGCGAATCGGATGAAGAAAAAGAAGAACGCCGCACGTTTACGACTAGGAAGATGGGGGCGAAACAGAAGCAAAGATGAAACAAATGAGTGGTGCGGTATTGGCAAAACGATCGAGCAACTCATTGAAAGTGTGAACAAAAGATGCCGCAGTGAGAATAGGTAACTTGACACGATATGCACAATCTCGATTTTACGGAACATCCGATAGAATCTATGATGTCGCAATCTGTCTAGGGGTGTTTAAAAAGCCGAACTTCTGGAMCATTACCTGATAAGATCCATCGATGGTGGAAGATCATCCGGAAAACTGTCCCAGGAAATATCCGACGCGGTATCAAACGCAGAGTCGACGTTTGATAAGCAACTCATTATCTCAGAGTATATCAACAAACGAATAGCTGGCTTGAATTTTCCTGATTTTTTTTGAATGAATACCAATTAGTTCAAACAAACAGTGTGGAAAACACAAAAAAGTACAAAAGAGGGCGGGATTGACAGAGCACATGTTCACGAGACCTGGTGACGAAAAGACAAAAAAGGTGCCGCCGGTAGTGGAAAAGAAAAGTGAAGAGGTTTGATTGCATTCCTGGTGTTCCACTTGAAAGTGACGTGAGGGGTAAAAAAGTGCGAAACTATCAATTTCAAAGAGGTTATAGAAGTGTTCCAGGAGGAATATAGGGATCACAGATATTTAGTTATATTCCCATGTAGACAAATCATTTTACCAGGTATCCAGATAAATTAAGTCAAGGCAGACAGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGAAAGTGTGAACAAAAGATG</pcr_primer_p1>
		<pcr_primer_p2>TAATGAGTTGCTTATCAAACGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTGAAAGTGTGAACAAAAGATGCCGCAGTGAGAATAGGTAACTTGACACGATATGCACAATCTCGATTTTACGGAACATCCGATAGAATCTATGATGTCGCAATCTGTCTAGGGGTGTTTAAAAAGCCGAACTTCTGGAACATTACCTGATAAGATCCATCGATGGTGGAAGATCATCCGGAAAACTGTCCCAGGAAATATCCGACGCGGTATCAAACGCAGAGTCGACGTTTGATAAGCAACTCATTA</canonical_amplicon>
		<polymorphic_amplicon>ATTGAAAGTGTGAACAAAAGATGCCGCAGTGAGAATAGGTAACTTGACACGATATGCACAATCTCGATTTTACGGAACATCCGATAGAATCTATGATGTCGCAATCTGTCTAGGGGTGTTTAAAAAGCCGAACTTCTGGAMCATTACCTGATAAGATCCATCGATGGTGGAAGATCATCCGGAAAACTGTCCCAGGAAATATCCGACGCGGTATCAAACGCAGAGTCGACGTTTGATAAGCAACTCATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30094</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>38655</contig_pos>
        <strand>+</strand>
        <context>GCTAGATCCT[C/T]GTTCACTACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTGCATTGCAGTGTCATGCTGTCCTGGTTCCTGTTGGTTGCTAGATCCT</left_flank>
        <right_flank>GTTCACTACTTTCCTGCTGGCCCTGTGTCTGCTGCACTGGTACCTGCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACACCGATACCACTTGAAGAAAAAAAAACACAGCAATTGGACGCGAGAAAAGAACAGCTGTGGTCGATGGTCAGTAATAGATCACAATTTGACGGTGGCAGCTAGGGTTGCTTAATTGACTTACGTTGAGAAATGAGAGAAACAGTAGACGATATGGATTTTGTGGATCATTATTGTCAAATGCAGTCTCGACGATTGTAGAGCAATATCGGATGGCAAGTAGGAACTGAAAGTTTGAAATTGAGATCTTGAAAATTGGCTCGTATGATTTTTTTAGTTTAAATATTTGCAAGGATAATTCAAACTCCTCAGAAACAAATTAAAAACGACCAACCTTGCCGGTTTCCAAAAATGCAGCCACAATAACAATCATATCATTCAGTTTATGAGCCTCAGGTCCGATATTTTTCTTTGACTTCTCCTTATCTGCCTCCAAATCAGAAAAGTTCTGCATTGCAGTGTCATGCTGTCCTGGTTCCTGTTGGTTGCTAGATCCTTGTTCACTACTTTCCTGCTGGCCCTGTGTCTGCTGCACTGGTACCTGCTGATTGTCTCTCTTCGCCGTAATCACCCTTCTAATATTCCCAAGCCAGCGGTCCATCATTGTGCCGATGGCCCGGATAAGGAGGACCGCAAGCTGAAATAAATTTTTTGAGACAAAATTTGTGGGAATGAGAAAGGAGTAAAAGTTTTCTCAAGTACAGTACCAGTCAATAAGATGTACATAAGCTGATTTTCAAGCATTTGATCATTTTCAGAACTTTAGTGCTCAGTAGTTAAGTTCCCGATCACTTTGAAAACCTTGGAGGGTGTAAAGCAAGCCTGAATTGAAAAATTTGCATTCAAAAATATTCGGGAACATTCCTAGTTTTTTCAGCTATTTGCTGATTTCTGAAAACACCCTTTTGTTCCCCGTTTTTTTTCTGAAAACGTGAACAAATAGGTGTTTGCTTCGAAACCAGCAAAAAGGTGAAAAACTAGGAATTTTGAAAAAATTT</canonical>
            <polymorphic>TCACACCGATACCACTTGAAGAAAAAAAAACACAGCAATTGGACGCGAGAAAAGAACAGCTGTGGTCGATGGTCAGTAATAGATCACAATTTGACGGTGGCAGCTAGGGTTGCTTAATTGACTTACGTTGAGAAATGAGAGAAACAGTAGACGATATGGATTTTGTGGATCATTATTGTCAAATGCAGTCTCGACGATTGTAGAGCAATATCGGATGGCAAGTAGGAACTGAAAGTTTGAAATTGAGATCTTGAAAATTGGCTCGTATGATTTTTTTAGTTTAAATATTTGCAAGGATAATTCAAACTCCTCAGAAACAAATTAAAAACGACCAACCTTGCCGGTTTCCAAAAATGCAGCCACAATAACAATCATATCATTCAGTTTATGAGCCTCAGGTCCGATATTTTTCTTTGACTTCTCCTTATCTGCCTCCAAATCAGAAAAGTTCTGCATTGCAGTGTCATGCTGTCCTGGTTCCTGTTGGTTGCTAGATCCTYGTTCACTACTTTCCTGCTGGCCCTGTGTCTGCTGCACTGGTACCTGCTGATTGTCTCTCTTCGCCGTAATCACCCTTCTAATATTCCCAAGCCAGCGGTCCATCATTGTGCCGATGGCCCGGATAAGGAGGACCGCAAGCTGAAATAAATTTTTTGAGACAAAATTTGTGGGAATGAGAAAGGAGTAAAAGTTTTCTCAAGTACAGTACCAGTCAATAAGATGTACATAAGCTGATTTTCAAGCATTTGATCATTTTCAGAACTTTAGTGCTCAGTAGTTAAGTTCCCGATCACTTTGAAAACCTTGGAGGGTGTAAAGCAAGCCTGAATTGAAAAATTTGCATTCAAAAATATTCGGGAACATTCCTAGTTTTTTCAGCTATTTGCTGATTTCTGAAAACACCCTTTTGTTCCCCGTTTTTTTTCTGAAAACGTGAACAAATAGGTGTTTGCTTCGAAACCAGCAAAAAGGTGAAAAACTAGGAATTTTGAAAAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAACAAATTAAAAACGACCA</pcr_primer_p1>
		<pcr_primer_p2>GAAGAGAGACAATCAGCAGGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAACAAATTAAAAACGACCAACCTTGCCGGTTTCCAAAAATGCAGCCACAATAACAATCATATCATTCAGTTTATGAGCCTCAGGTCCGATATTTTTCTTTGACTTCTCCTTATCTGCCTCCAAATCAGAAAAGTTCTGCATTGCAGTGTCATGCTGTCCTGGTTCCTGTTGGTTGCTAGATCCTTGTTCACTACTTTCCTGCTGGCCCTGTGTCTGCTGCACTGGTACCTGCTGATTGTCTCTCTTC</canonical_amplicon>
		<polymorphic_amplicon>AGAAACAAATTAAAAACGACCAACCTTGCCGGTTTCCAAAAATGCAGCCACAATAACAATCATATCATTCAGTTTATGAGCCTCAGGTCCGATATTTTTCTTTGACTTCTCCTTATCTGCCTCCAAATCAGAAAAGTTCTGCATTGCAGTGTCATGCTGTCCTGGTTCCTGTTGGTTGCTAGATCCTYGTTCACTACTTTCCTGCTGGCCCTGTGTCTGCTGCACTGGTACCTGCTGATTGTCTCTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30095</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>38684</contig_pos>
        <strand>+</strand>
        <context>GGCCCTGTGT[A/C]TGCTGCACTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCTGTTGGTTGCTAGATCCTTGTTCACTACTTTCCTGCTGGCCCTGTGT</left_flank>
        <right_flank>TGCTGCACTGGTACCTGCTGATTGTCTCTCTTCGCCGTAATCACCCTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACAGCAATTGGACGCGAGAAAAGAACAGCTGTGGTCGATGGTCAGTAATAGATCACAATTTGACGGTGGCAGCTAGGGTTGCTTAATTGACTTACGTTGAGAAATGAGAGAAACAGTAGACGATATGGATTTTGTGGATCATTATTGTCAAATGCAGTCTCGACGATTGTAGAGCAATATCGGATGGCAAGTAGGAACTGAAAGTTTGAAATTGAGATCTTGAAAATTGGCTCGTATGATTTTTTTAGTTTAAATATTTGCAAGGATAATTCAAACTCCTCAGAAACAAATTAAAAACGACCAACCTTGCCGGTTTCCAAAAATGCAGCCACAATAACAATCATATCATTCAGTTTATGAGCCTCAGGTCCGATATTTTTCTTTGACTTCTCCTTATCTGCCTCCAAATCAGAAAAGTTCTGCATTGCAGTGTCATGCTGTCCTGGTTCCTGTTGGTTGCTAGATCCTTGTTCACTACTTTCCTGCTGGCCCTGTGTCTGCTGCACTGGTACCTGCTGATTGTCTCTCTTCGCCGTAATCACCCTTCTAATATTCCCAAGCCAGCGGTCCATCATTGTGCCGATGGCCCGGATAAGGAGGACCGCAAGCTGAAATAAATTTTTTGAGACAAAATTTGTGGGAATGAGAAAGGAGTAAAAGTTTTCTCAAGTACAGTACCAGTCAATAAGATGTACATAAGCTGATTTTCAAGCATTTGATCATTTTCAGAACTTTAGTGCTCAGTAGTTAAGTTCCCGATCACTTTGAAAACCTTGGAGGGTGTAAAGCAAGCCTGAATTGAAAAATTTGCATTCAAAAATATTCGGGAACATTCCTAGTTTTTTCAGCTATTTGCTGATTTCTGAAAACACCCTTTTGTTCCCCGTTTTTTTTCTGAAAACGTGAACAAATAGGTGTTTGCTTCGAAACCAGCAAAAAGGTGAAAAACTAGGAATTTTGAAAAAATTTTGTGAATGCGAGTTTTTATTCTTGATCTG</canonical>
            <polymorphic>ACACAGCAATTGGACGCGAGAAAAGAACAGCTGTGGTCGATGGTCAGTAATAGATCACAATTTGACGGTGGCAGCTAGGGTTGCTTAATTGACTTACGTTGAGAAATGAGAGAAACAGTAGACGATATGGATTTTGTGGATCATTATTGTCAAATGCAGTCTCGACGATTGTAGAGCAATATCGGATGGCAAGTAGGAACTGAAAGTTTGAAATTGAGATCTTGAAAATTGGCTCGTATGATTTTTTTAGTTTAAATATTTGCAAGGATAATTCAAACTCCTCAGAAACAAATTAAAAACGACCAACCTTGCCGGTTTCCAAAAATGCAGCCACAATAACAATCATATCATTCAGTTTATGAGCCTCAGGTCCGATATTTTTCTTTGACTTCTCCTTATCTGCCTCCAAATCAGAAAAGTTCTGCATTGCAGTGTCATGCTGTCCTGGTTCCTGTTGGTTGCTAGATCCTTGTTCACTACTTTCCTGCTGGCCCTGTGTMTGCTGCACTGGTACCTGCTGATTGTCTCTCTTCGCCGTAATCACCCTTCTAATATTCCCAAGCCAGCGGTCCATCATTGTGCCGATGGCCCGGATAAGGAGGACCGCAAGCTGAAATAAATTTTTTGAGACAAAATTTGTGGGAATGAGAAAGGAGTAAAAGTTTTCTCAAGTACAGTACCAGTCAATAAGATGTACATAAGCTGATTTTCAAGCATTTGATCATTTTCAGAACTTTAGTGCTCAGTAGTTAAGTTCCCGATCACTTTGAAAACCTTGGAGGGTGTAAAGCAAGCCTGAATTGAAAAATTTGCATTCAAAAATATTCGGGAACATTCCTAGTTTTTTCAGCTATTTGCTGATTTCTGAAAACACCCTTTTGTTCCCCGTTTTTTTTCTGAAAACGTGAACAAATAGGTGTTTGCTTCGAAACCAGCAAAAAGGTGAAAAACTAGGAATTTTGAAAAAATTTTGTGAATGCGAGTTTTTATTCTTGATCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCTTATCTGCCTCCAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAACTTTTACTCCTTTCTCATTC</pcr_primer_p2>
		<pcr_amplicon_size>275</pcr_amplicon_size>
		<canonical_amplicon>CTCCTTATCTGCCTCCAAATCAGAAAAGTTCTGCATTGCAGTGTCATGCTGTCCTGGTTCCTGTTGGTTGCTAGATCCTTGTTCACTACTTTCCTGCTGGCCCTGTGTCTGCTGCACTGGTACCTGCTGATTGTCTCTCTTCGCCGTAATCACCCTTCTAATATTCCCAAGCCAGCGGTCCATCATTGTGCCGATGGCCCGGATAAGGAGGACCGCAAGCTGAAATAAATTTTTTGAGACAAAATTTGTGGGAATGAGAAAGGAGTAAAAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>CTCCTTATCTGCCTCCAAATCAGAAAAGTTCTGCATTGCAGTGTCATGCTGTCCTGGTTCCTGTTGGTTGCTAGATCCTTGTTCACTACTTTCCTGCTGGCCCTGTGTMTGCTGCACTGGTACCTGCTGATTGTCTCTCTTCGCCGTAATCACCCTTCTAATATTCCCAAGCCAGCGGTCCATCATTGTGCCGATGGCCCGGATAAGGAGGACCGCAAGCTGAAATAAATTTTTTGAGACAAAATTTGTGGGAATGAGAAAGGAGTAAAAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30096</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>38718</contig_pos>
        <strand>+</strand>
        <context>GTCTCTCTTC[C/G]CCGTAATCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCTGCTGGCCCTGTGTCTGCTGCACTGGTACCTGCTGATTGTCTCTCTTC</left_flank>
        <right_flank>CCGTAATCACCCTTCTAATATTCCCAAGCCAGCGGTCCATCATTGTGCCG</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTCGATGGTCAGTAATAGATCACAATTTGACGGTGGCAGCTAGGGTTGCTTAATTGACTTACGTTGAGAAATGAGAGAAACAGTAGACGATATGGATTTTGTGGATCATTATTGTCAAATGCAGTCTCGACGATTGTAGAGCAATATCGGATGGCAAGTAGGAACTGAAAGTTTGAAATTGAGATCTTGAAAATTGGCTCGTATGATTTTTTTAGTTTAAATATTTGCAAGGATAATTCAAACTCCTCAGAAACAAATTAAAAACGACCAACCTTGCCGGTTTCCAAAAATGCAGCCACAATAACAATCATATCATTCAGTTTATGAGCCTCAGGTCCGATATTTTTCTTTGACTTCTCCTTATCTGCCTCCAAATCAGAAAAGTTCTGCATTGCAGTGTCATGCTGTCCTGGTTCCTGTTGGTTGCTAGATCCTTGTTCACTACTTTCCTGCTGGCCCTGTGTCTGCTGCACTGGTACCTGCTGATTGTCTCTCTTCGCCGTAATCACCCTTCTAATATTCCCAAGCCAGCGGTCCATCATTGTGCCGATGGCCCGGATAAGGAGGACCGCAAGCTGAAATAAATTTTTTGAGACAAAATTTGTGGGAATGAGAAAGGAGTAAAAGTTTTCTCAAGTACAGTACCAGTCAATAAGATGTACATAAGCTGATTTTCAAGCATTTGATCATTTTCAGAACTTTAGTGCTCAGTAGTTAAGTTCCCGATCACTTTGAAAACCTTGGAGGGTGTAAAGCAAGCCTGAATTGAAAAATTTGCATTCAAAAATATTCGGGAACATTCCTAGTTTTTTCAGCTATTTGCTGATTTCTGAAAACACCCTTTTGTTCCCCGTTTTTTTTCTGAAAACGTGAACAAATAGGTGTTTGCTTCGAAACCAGCAAAAAGGTGAAAAACTAGGAATTTTGAAAAAATTTTGTGAATGCGAGTTTTTATTCTTGATCTGTTTTACATTCTCCAAAGTGATTCGAAACTTTACA</canonical>
            <polymorphic>GGTCGATGGTCAGTAATAGATCACAATTTGACGGTGGCAGCTAGGGTTGCTTAATTGACTTACGTTGAGAAATGAGAGAAACAGTAGACGATATGGATTTTGTGGATCATTATTGTCAAATGCAGTCTCGACGATTGTAGAGCAATATCGGATGGCAAGTAGGAACTGAAAGTTTGAAATTGAGATCTTGAAAATTGGCTCGTATGATTTTTTTAGTTTAAATATTTGCAAGGATAATTCAAACTCCTCAGAAACAAATTAAAAACGACCAACCTTGCCGGTTTCCAAAAATGCAGCCACAATAACAATCATATCATTCAGTTTATGAGCCTCAGGTCCGATATTTTTCTTTGACTTCTCCTTATCTGCCTCCAAATCAGAAAAGTTCTGCATTGCAGTGTCATGCTGTCCTGGTTCCTGTTGGTTGCTAGATCCTTGTTCACTACTTTCCTGCTGGCCCTGTGTCTGCTGCACTGGTACCTGCTGATTGTCTCTCTTCSCCGTAATCACCCTTCTAATATTCCCAAGCCAGCGGTCCATCATTGTGCCGATGGCCCGGATAAGGAGGACCGCAAGCTGAAATAAATTTTTTGAGACAAAATTTGTGGGAATGAGAAAGGAGTAAAAGTTTTCTCAAGTACAGTACCAGTCAATAAGATGTACATAAGCTGATTTTCAAGCATTTGATCATTTTCAGAACTTTAGTGCTCAGTAGTTAAGTTCCCGATCACTTTGAAAACCTTGGAGGGTGTAAAGCAAGCCTGAATTGAAAAATTTGCATTCAAAAATATTCGGGAACATTCCTAGTTTTTTCAGCTATTTGCTGATTTCTGAAAACACCCTTTTGTTCCCCGTTTTTTTTCTGAAAACGTGAACAAATAGGTGTTTGCTTCGAAACCAGCAAAAAGGTGAAAAACTAGGAATTTTGAAAAAATTTTGTGAATGCGAGTTTTTATTCTTGATCTGTTTTACATTCTCCAAAGTGATTCGAAACTTTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCTTATCTGCCTCCAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAACTTTTACTCCTTTCTCATTC</pcr_primer_p2>
		<pcr_amplicon_size>275</pcr_amplicon_size>
		<canonical_amplicon>CTCCTTATCTGCCTCCAAATCAGAAAAGTTCTGCATTGCAGTGTCATGCTGTCCTGGTTCCTGTTGGTTGCTAGATCCTTGTTCACTACTTTCCTGCTGGCCCTGTGTCTGCTGCACTGGTACCTGCTGATTGTCTCTCTTCGCCGTAATCACCCTTCTAATATTCCCAAGCCAGCGGTCCATCATTGTGCCGATGGCCCGGATAAGGAGGACCGCAAGCTGAAATAAATTTTTTGAGACAAAATTTGTGGGAATGAGAAAGGAGTAAAAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>CTCCTTATCTGCCTCCAAATCAGAAAAGTTCTGCATTGCAGTGTCATGCTGTCCTGGTTCCTGTTGGTTGCTAGATCCTTGTTCACTACTTTCCTGCTGGCCCTGTGTCTGCTGCACTGGTACCTGCTGATTGTCTCTCTTCSCCGTAATCACCCTTCTAATATTCCCAAGCCAGCGGTCCATCATTGTGCCGATGGCCCGGATAAGGAGGACCGCAAGCTGAAATAAATTTTTTGAGACAAAATTTGTGGGAATGAGAAAGGAGTAAAAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30097</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>38731</contig_pos>
        <strand>+</strand>
        <context>GTAATCACCC[G/T]TCTAATATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTCTGCTGCACTGGTACCTGCTGATTGTCTCTCTTCGCCGTAATCACCC</left_flank>
        <right_flank>TCTAATATTCCCAAGCCAGCGGTCCATCATTGTGCCGATGGCCCGGATAA</right_flank>
        <qual_score>134</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATAGATCACAATTTGACGGTGGCAGCTAGGGTTGCTTAATTGACTTACGTTGAGAAATGAGAGAAACAGTAGACGATATGGATTTTGTGGATCATTATTGTCAAATGCAGTCTCGACGATTGTAGAGCAATATCGGATGGCAAGTAGGAACTGAAAGTTTGAAATTGAGATCTTGAAAATTGGCTCGTATGATTTTTTTAGTTTAAATATTTGCAAGGATAATTCAAACTCCTCAGAAACAAATTAAAAACGACCAACCTTGCCGGTTTCCAAAAATGCAGCCACAATAACAATCATATCATTCAGTTTATGAGCCTCAGGTCCGATATTTTTCTTTGACTTCTCCTTATCTGCCTCCAAATCAGAAAAGTTCTGCATTGCAGTGTCATGCTGTCCTGGTTCCTGTTGGTTGCTAGATCCTTGTTCACTACTTTCCTGCTGGCCCTGTGTCTGCTGCACTGGTACCTGCTGATTGTCTCTCTTCGCCGTAATCACCCTTCTAATATTCCCAAGCCAGCGGTCCATCATTGTGCCGATGGCCCGGATAAGGAGGACCGCAAGCTGAAATAAATTTTTTGAGACAAAATTTGTGGGAATGAGAAAGGAGTAAAAGTTTTCTCAAGTACAGTACCAGTCAATAAGATGTACATAAGCTGATTTTCAAGCATTTGATCATTTTCAGAACTTTAGTGCTCAGTAGTTAAGTTCCCGATCACTTTGAAAACCTTGGAGGGTGTAAAGCAAGCCTGAATTGAAAAATTTGCATTCAAAAATATTCGGGAACATTCCTAGTTTTTTCAGCTATTTGCTGATTTCTGAAAACACCCTTTTGTTCCCCGTTTTTTTTCTGAAAACGTGAACAAATAGGTGTTTGCTTCGAAACCAGCAAAAAGGTGAAAAACTAGGAATTTTGAAAAAATTTTGTGAATGCGAGTTTTTATTCTTGATCTGTTTTACATTCTCCAAAGTGATTCGAAACTTTACAGCCAAGCTTCAGA</canonical>
            <polymorphic>TAATAGATCACAATTTGACGGTGGCAGCTAGGGTTGCTTAATTGACTTACGTTGAGAAATGAGAGAAACAGTAGACGATATGGATTTTGTGGATCATTATTGTCAAATGCAGTCTCGACGATTGTAGAGCAATATCGGATGGCAAGTAGGAACTGAAAGTTTGAAATTGAGATCTTGAAAATTGGCTCGTATGATTTTTTTAGTTTAAATATTTGCAAGGATAATTCAAACTCCTCAGAAACAAATTAAAAACGACCAACCTTGCCGGTTTCCAAAAATGCAGCCACAATAACAATCATATCATTCAGTTTATGAGCCTCAGGTCCGATATTTTTCTTTGACTTCTCCTTATCTGCCTCCAAATCAGAAAAGTTCTGCATTGCAGTGTCATGCTGTCCTGGTTCCTGTTGGTTGCTAGATCCTTGTTCACTACTTTCCTGCTGGCCCTGTGTCTGCTGCACTGGTACCTGCTGATTGTCTCTCTTCGCCGTAATCACCCKTCTAATATTCCCAAGCCAGCGGTCCATCATTGTGCCGATGGCCCGGATAAGGAGGACCGCAAGCTGAAATAAATTTTTTGAGACAAAATTTGTGGGAATGAGAAAGGAGTAAAAGTTTTCTCAAGTACAGTACCAGTCAATAAGATGTACATAAGCTGATTTTCAAGCATTTGATCATTTTCAGAACTTTAGTGCTCAGTAGTTAAGTTCCCGATCACTTTGAAAACCTTGGAGGGTGTAAAGCAAGCCTGAATTGAAAAATTTGCATTCAAAAATATTCGGGAACATTCCTAGTTTTTTCAGCTATTTGCTGATTTCTGAAAACACCCTTTTGTTCCCCGTTTTTTTTCTGAAAACGTGAACAAATAGGTGTTTGCTTCGAAACCAGCAAAAAGGTGAAAAACTAGGAATTTTGAAAAAATTTTGTGAATGCGAGTTTTTATTCTTGATCTGTTTTACATTCTCCAAAGTGATTCGAAACTTTACAGCCAAGCTTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCTTATCTGCCTCCAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAACTTTTACTCCTTTCTCATTC</pcr_primer_p2>
		<pcr_amplicon_size>275</pcr_amplicon_size>
		<canonical_amplicon>CTCCTTATCTGCCTCCAAATCAGAAAAGTTCTGCATTGCAGTGTCATGCTGTCCTGGTTCCTGTTGGTTGCTAGATCCTTGTTCACTACTTTCCTGCTGGCCCTGTGTCTGCTGCACTGGTACCTGCTGATTGTCTCTCTTCGCCGTAATCACCCTTCTAATATTCCCAAGCCAGCGGTCCATCATTGTGCCGATGGCCCGGATAAGGAGGACCGCAAGCTGAAATAAATTTTTTGAGACAAAATTTGTGGGAATGAGAAAGGAGTAAAAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>CTCCTTATCTGCCTCCAAATCAGAAAAGTTCTGCATTGCAGTGTCATGCTGTCCTGGTTCCTGTTGGTTGCTAGATCCTTGTTCACTACTTTCCTGCTGGCCCTGTGTCTGCTGCACTGGTACCTGCTGATTGTCTCTCTTCGCCGTAATCACCCKTCTAATATTCCCAAGCCAGCGGTCCATCATTGTGCCGATGGCCCGGATAAGGAGGACCGCAAGCTGAAATAAATTTTTTGAGACAAAATTTGTGGGAATGAGAAAGGAGTAAAAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30098</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>38773</contig_pos>
        <strand>+</strand>
        <context>GTGCCGATGG[A/C]CCGGATAAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATCACCCTTCTAATATTCCCAAGCCAGCGGTCCATCATTGTGCCGATGG</left_flank>
        <right_flank>CCGGATAAGGAGGACCGCAAGCTGAAATAAATTTTTTGAGACAAAATTTG</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACTTACGTTGAGAAATGAGAGAAACAGTAGACGATATGGATTTTGTGGATCATTATTGTCAAATGCAGTCTCGACGATTGTAGAGCAATATCGGATGGCAAGTAGGAACTGAAAGTTTGAAATTGAGATCTTGAAAATTGGCTCGTATGATTTTTTTAGTTTAAATATTTGCAAGGATAATTCAAACTCCTCAGAAACAAATTAAAAACGACCAACCTTGCCGGTTTCCAAAAATGCAGCCACAATAACAATCATATCATTCAGTTTATGAGCCTCAGGTCCGATATTTTTCTTTGACTTCTCCTTATCTGCCTCCAAATCAGAAAAGTTCTGCATTGCAGTGTCATGCTGTCCTGGTTCCTGTTGGTTGCTAGATCCTTGTTCACTACTTTCCTGCTGGCCCTGTGTCTGCTGCACTGGTACCTGCTGATTGTCTCTCTTCGCCGTAATCACCCTTCTAATATTCCCAAGCCAGCGGTCCATCATTGTGCCGATGGCCCGGATAAGGAGGACCGCAAGCTGAAATAAATTTTTTGAGACAAAATTTGTGGGAATGAGAAAGGAGTAAAAGTTTTCTCAAGTACAGTACCAGTCAATAAGATGTACATAAGCTGATTTTCAAGCATTTGATCATTTTCAGAACTTTAGTGCTCAGTAGTTAAGTTCCCGATCACTTTGAAAACCTTGGAGGGTGTAAAGCAAGCCTGAATTGAAAAATTTGCATTCAAAAATATTCGGGAACATTCCTAGTTTTTTCAGCTATTTGCTGATTTCTGAAAACACCCTTTTGTTCCCCGTTTTTTTTCTGAAAACGTGAACAAATAGGTGTTTGCTTCGAAACCAGCAAAAAGGTGAAAAACTAGGAATTTTGAAAAAATTTTGTGAATGCGAGTTTTTATTCTTGATCTGTTTTACATTCTCCAAAGTGATTCGAAACTTTACAGCCAAGCTTCAGACTCTTGAAAATTGCCGAAAATCGAATGAAAAATAGTTTTTTG</canonical>
            <polymorphic>TGACTTACGTTGAGAAATGAGAGAAACAGTAGACGATATGGATTTTGTGGATCATTATTGTCAAATGCAGTCTCGACGATTGTAGAGCAATATCGGATGGCAAGTAGGAACTGAAAGTTTGAAATTGAGATCTTGAAAATTGGCTCGTATGATTTTTTTAGTTTAAATATTTGCAAGGATAATTCAAACTCCTCAGAAACAAATTAAAAACGACCAACCTTGCCGGTTTCCAAAAATGCAGCCACAATAACAATCATATCATTCAGTTTATGAGCCTCAGGTCCGATATTTTTCTTTGACTTCTCCTTATCTGCCTCCAAATCAGAAAAGTTCTGCATTGCAGTGTCATGCTGTCCTGGTTCCTGTTGGTTGCTAGATCCTTGTTCACTACTTTCCTGCTGGCCCTGTGTCTGCTGCACTGGTACCTGCTGATTGTCTCTCTTCGCCGTAATCACCCTTCTAATATTCCCAAGCCAGCGGTCCATCATTGTGCCGATGGMCCGGATAAGGAGGACCGCAAGCTGAAATAAATTTTTTGAGACAAAATTTGTGGGAATGAGAAAGGAGTAAAAGTTTTCTCAAGTACAGTACCAGTCAATAAGATGTACATAAGCTGATTTTCAAGCATTTGATCATTTTCAGAACTTTAGTGCTCAGTAGTTAAGTTCCCGATCACTTTGAAAACCTTGGAGGGTGTAAAGCAAGCCTGAATTGAAAAATTTGCATTCAAAAATATTCGGGAACATTCCTAGTTTTTTCAGCTATTTGCTGATTTCTGAAAACACCCTTTTGTTCCCCGTTTTTTTTCTGAAAACGTGAACAAATAGGTGTTTGCTTCGAAACCAGCAAAAAGGTGAAAAACTAGGAATTTTGAAAAAATTTTGTGAATGCGAGTTTTTATTCTTGATCTGTTTTACATTCTCCAAAGTGATTCGAAACTTTACAGCCAAGCTTCAGACTCTTGAAAATTGCCGAAAATCGAATGAAAAATAGTTTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>499 356 145</canonical_bands>
                <polymorphic_bands>644 356</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 402 97</canonical_bands>
                <polymorphic_bands>598 402</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>185 143 128 98 92 92 71 56 49 33 26 22 5</canonical_bands>
                <polymorphic_bands>185 143 128 98 92 92 71 56 49 48 33 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCCTTATCTGCCTCCAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAACTTTTACTCCTTTCTCATTC</pcr_primer_p2>
		<pcr_amplicon_size>275</pcr_amplicon_size>
		<canonical_amplicon>CTCCTTATCTGCCTCCAAATCAGAAAAGTTCTGCATTGCAGTGTCATGCTGTCCTGGTTCCTGTTGGTTGCTAGATCCTTGTTCACTACTTTCCTGCTGGCCCTGTGTCTGCTGCACTGGTACCTGCTGATTGTCTCTCTTCGCCGTAATCACCCTTCTAATATTCCCAAGCCAGCGGTCCATCATTGTGCCGATGGCCCGGATAAGGAGGACCGCAAGCTGAAATAAATTTTTTGAGACAAAATTTGTGGGAATGAGAAAGGAGTAAAAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>CTCCTTATCTGCCTCCAAATCAGAAAAGTTCTGCATTGCAGTGTCATGCTGTCCTGGTTCCTGTTGGTTGCTAGATCCTTGTTCACTACTTTCCTGCTGGCCCTGTGTCTGCTGCACTGGTACCTGCTGATTGTCTCTCTTCGCCGTAATCACCCTTCTAATATTCCCAAGCCAGCGGTCCATCATTGTGCCGATGGMCCGGATAAGGAGGACCGCAAGCTGAAATAAATTTTTTGAGACAAAATTTGTGGGAATGAGAAAGGAGTAAAAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30099</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>38808</contig_pos>
        <strand>+</strand>
        <context>AAATAAATTT[C/T]TTGAGACAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATTGTGCCGATGGCCCGGATAAGGAGGACCGCAAGCTGAAATAAATTT</left_flank>
        <right_flank>TTGAGACAAAATTTGTGGGAATGAGAAAGGAGTAAAAGTTTTCTCAAGTA</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATGGATTTTGTGGATCATTATTGTCAAATGCAGTCTCGACGATTGTAGAGCAATATCGGATGGCAAGTAGGAACTGAAAGTTTGAAATTGAGATCTTGAAAATTGGCTCGTATGATTTTTTTAGTTTAAATATTTGCAAGGATAATTCAAACTCCTCAGAAACAAATTAAAAACGACCAACCTTGCCGGTTTCCAAAAATGCAGCCACAATAACAATCATATCATTCAGTTTATGAGCCTCAGGTCCGATATTTTTCTTTGACTTCTCCTTATCTGCCTCCAAATCAGAAAAGTTCTGCATTGCAGTGTCATGCTGTCCTGGTTCCTGTTGGTTGCTAGATCCTTGTTCACTACTTTCCTGCTGGCCCTGTGTCTGCTGCACTGGTACCTGCTGATTGTCTCTCTTCGCCGTAATCACCCTTCTAATATTCCCAAGCCAGCGGTCCATCATTGTGCCGATGGCCCGGATAAGGAGGACCGCAAGCTGAAATAAATTTTTTGAGACAAAATTTGTGGGAATGAGAAAGGAGTAAAAGTTTTCTCAAGTACAGTACCAGTCAATAAGATGTACATAAGCTGATTTTCAAGCATTTGATCATTTTCAGAACTTTAGTGCTCAGTAGTTAAGTTCCCGATCACTTTGAAAACCTTGGAGGGTGTAAAGCAAGCCTGAATTGAAAAATTTGCATTCAAAAATATTCGGGAACATTCCTAGTTTTTTCAGCTATTTGCTGATTTCTGAAAACACCCTTTTGTTCCCCGTTTTTTTTCTGAAAACGTGAACAAATAGGTGTTTGCTTCGAAACCAGCAAAAAGGTGAAAAACTAGGAATTTTGAAAAAATTTTGTGAATGCGAGTTTTTATTCTTGATCTGTTTTACATTCTCCAAAGTGATTCGAAACTTTACAGCCAAGCTTCAGACTCTTGAAAATTGCCGAAAATCGAATGAAAAATAGTTTTTTGTATATTTCATCAACCGTTACTGTAGGTAGGAAAGA</canonical>
            <polymorphic>ATATGGATTTTGTGGATCATTATTGTCAAATGCAGTCTCGACGATTGTAGAGCAATATCGGATGGCAAGTAGGAACTGAAAGTTTGAAATTGAGATCTTGAAAATTGGCTCGTATGATTTTTTTAGTTTAAATATTTGCAAGGATAATTCAAACTCCTCAGAAACAAATTAAAAACGACCAACCTTGCCGGTTTCCAAAAATGCAGCCACAATAACAATCATATCATTCAGTTTATGAGCCTCAGGTCCGATATTTTTCTTTGACTTCTCCTTATCTGCCTCCAAATCAGAAAAGTTCTGCATTGCAGTGTCATGCTGTCCTGGTTCCTGTTGGTTGCTAGATCCTTGTTCACTACTTTCCTGCTGGCCCTGTGTCTGCTGCACTGGTACCTGCTGATTGTCTCTCTTCGCCGTAATCACCCTTCTAATATTCCCAAGCCAGCGGTCCATCATTGTGCCGATGGCCCGGATAAGGAGGACCGCAAGCTGAAATAAATTTYTTGAGACAAAATTTGTGGGAATGAGAAAGGAGTAAAAGTTTTCTCAAGTACAGTACCAGTCAATAAGATGTACATAAGCTGATTTTCAAGCATTTGATCATTTTCAGAACTTTAGTGCTCAGTAGTTAAGTTCCCGATCACTTTGAAAACCTTGGAGGGTGTAAAGCAAGCCTGAATTGAAAAATTTGCATTCAAAAATATTCGGGAACATTCCTAGTTTTTTCAGCTATTTGCTGATTTCTGAAAACACCCTTTTGTTCCCCGTTTTTTTTCTGAAAACGTGAACAAATAGGTGTTTGCTTCGAAACCAGCAAAAAGGTGAAAAACTAGGAATTTTGAAAAAATTTTGTGAATGCGAGTTTTTATTCTTGATCTGTTTTACATTCTCCAAAGTGATTCGAAACTTTACAGCCAAGCTTCAGACTCTTGAAAATTGCCGAAAATCGAATGAAAAATAGTTTTTTGTATATTTCATCAACCGTTACTGTAGGTAGGAAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACCTGCTGATTGTCTCTCTT</pcr_primer_p1>
		<pcr_primer_p2>CCTCTCATATCTCTTTCCTACCT</pcr_primer_p2>
		<pcr_amplicon_size>625</pcr_amplicon_size>
		<canonical_amplicon>GTACCTGCTGATTGTCTCTCTTCGCCGTAATCACCCTTCTAATATTCCCAAGCCAGCGGTCCATCATTGTGCCGATGGCCCGGATAAGGAGGACCGCAAGCTGAAATAAATTTTTTGAGACAAAATTTGTGGGAAT</canonical_amplicon>
		<polymorphic_amplicon>GTACCTGCTGATTGTCTCTCTTCGCCGTAATCACCCTTCTAATATTCCCAAGCCAGCGGTCCATCATTGTGCCGATGGCCCGGATAAGGAGGACCGCAAGCTGAAATAAATTTYTTGAGACAAAATTTGTGGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30100</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>38823</contig_pos>
        <strand>+</strand>
        <context>GACAAAATTT[G/T]TGGGAATGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCCGGATAAGGAGGACCGCAAGCTGAAATAAATTTTTTGAGACAAAATTT</left_flank>
        <right_flank>TGGGAATGAGAAAGGAGTAAAAGTTTTCTCAAGTACAGTACCAGTCAATA</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCATTATTGTCAAATGCAGTCTCGACGATTGTAGAGCAATATCGGATGGCAAGTAGGAACTGAAAGTTTGAAATTGAGATCTTGAAAATTGGCTCGTATGATTTTTTTAGTTTAAATATTTGCAAGGATAATTCAAACTCCTCAGAAACAAATTAAAAACGACCAACCTTGCCGGTTTCCAAAAATGCAGCCACAATAACAATCATATCATTCAGTTTATGAGCCTCAGGTCCGATATTTTTCTTTGACTTCTCCTTATCTGCCTCCAAATCAGAAAAGTTCTGCATTGCAGTGTCATGCTGTCCTGGTTCCTGTTGGTTGCTAGATCCTTGTTCACTACTTTCCTGCTGGCCCTGTGTCTGCTGCACTGGTACCTGCTGATTGTCTCTCTTCGCCGTAATCACCCTTCTAATATTCCCAAGCCAGCGGTCCATCATTGTGCCGATGGCCCGGATAAGGAGGACCGCAAGCTGAAATAAATTTTTTGAGACAAAATTTGTGGGAATGAGAAAGGAGTAAAAGTTTTCTCAAGTACAGTACCAGTCAATAAGATGTACATAAGCTGATTTTCAAGCATTTGATCATTTTCAGAACTTTAGTGCTCAGTAGTTAAGTTCCCGATCACTTTGAAAACCTTGGAGGGTGTAAAGCAAGCCTGAATTGAAAAATTTGCATTCAAAAATATTCGGGAACATTCCTAGTTTTTTCAGCTATTTGCTGATTTCTGAAAACACCCTTTTGTTCCCCGTTTTTTTTCTGAAAACGTGAACAAATAGGTGTTTGCTTCGAAACCAGCAAAAAGGTGAAAAACTAGGAATTTTGAAAAAATTTTGTGAATGCGAGTTTTTATTCTTGATCTGTTTTACATTCTCCAAAGTGATTCGAAACTTTACAGCCAAGCTTCAGACTCTTGAAAATTGCCGAAAATCGAATGAAAAATAGTTTTTTGTATATTTCATCAACCGTTACTGTAGGTAGGAAAGAGATATGAGAGGACCA</canonical>
            <polymorphic>ATCATTATTGTCAAATGCAGTCTCGACGATTGTAGAGCAATATCGGATGGCAAGTAGGAACTGAAAGTTTGAAATTGAGATCTTGAAAATTGGCTCGTATGATTTTTTTAGTTTAAATATTTGCAAGGATAATTCAAACTCCTCAGAAACAAATTAAAAACGACCAACCTTGCCGGTTTCCAAAAATGCAGCCACAATAACAATCATATCATTCAGTTTATGAGCCTCAGGTCCGATATTTTTCTTTGACTTCTCCTTATCTGCCTCCAAATCAGAAAAGTTCTGCATTGCAGTGTCATGCTGTCCTGGTTCCTGTTGGTTGCTAGATCCTTGTTCACTACTTTCCTGCTGGCCCTGTGTCTGCTGCACTGGTACCTGCTGATTGTCTCTCTTCGCCGTAATCACCCTTCTAATATTCCCAAGCCAGCGGTCCATCATTGTGCCGATGGCCCGGATAAGGAGGACCGCAAGCTGAAATAAATTTTTTGAGACAAAATTTKTGGGAATGAGAAAGGAGTAAAAGTTTTCTCAAGTACAGTACCAGTCAATAAGATGTACATAAGCTGATTTTCAAGCATTTGATCATTTTCAGAACTTTAGTGCTCAGTAGTTAAGTTCCCGATCACTTTGAAAACCTTGGAGGGTGTAAAGCAAGCCTGAATTGAAAAATTTGCATTCAAAAATATTCGGGAACATTCCTAGTTTTTTCAGCTATTTGCTGATTTCTGAAAACACCCTTTTGTTCCCCGTTTTTTTTCTGAAAACGTGAACAAATAGGTGTTTGCTTCGAAACCAGCAAAAAGGTGAAAAACTAGGAATTTTGAAAAAATTTTGTGAATGCGAGTTTTTATTCTTGATCTGTTTTACATTCTCCAAAGTGATTCGAAACTTTACAGCCAAGCTTCAGACTCTTGAAAATTGCCGAAAATCGAATGAAAAATAGTTTTTTGTATATTTCATCAACCGTTACTGTAGGTAGGAAAGAGATATGAGAGGACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>194 120 101 100 88 60 44 42 38 36 34 30 26 23 22 21 12 9</canonical_bands>
                <polymorphic_bands>194 160 120 101 88 44 42 38 36 34 30 26 23 22 21 12 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTACCTGCTGATTGTCTCTCTT</pcr_primer_p1>
		<pcr_primer_p2>CCTCTCATATCTCTTTCCTACCT</pcr_primer_p2>
		<pcr_amplicon_size>625</pcr_amplicon_size>
		<canonical_amplicon>GTACCTGCTGATTGTCTCTCTTCGCCGTAATCACCCTTCTAATATTCCCAAGCCAGCGGTCCATCATTGTGCCGATGGCCCGGATAAGGAGGACCGCAAGCTGAAATAAATTTTTTGAGACAAAATTTGTGGGAATGAGAAAGGAGTAAAAGTTTTCTCAAGTACAGTACCAGTCAATAAGATGTACATAAGCTGATTTTCAAGCATTTGATCATTTTCAGAACTTTAGTGCTCAGTAGTTAAGTTCCCGATCACTTTGAAAACCTTGGAGGGTGTAAAGCAAGCCTGAATTGAAAAATTTGCATTCAAAAATATTCGGGAACATTCCTAGTTTTTTCAGCTATTTGCTGATTTCTGAAAACACCCTTTTGTTCCCCGTTTTTTTTCTGAAAACGTGAACAAATAGGTGTTTGCTTCGAAACCAGCAAAAAGGTGAAAAACTAGGAATTTTGAAAAAATTTTGTGAATGCGAGTTTTTATTCTTGATCTGTTTTACATTCTCCAAAGTGATTCGAAACTTTACAGCCAAGCTTCAGACTCTTGAAAATTGCCGAAAATCGAATGAAAAATAGTTTTTTGTATATTTCATCAACCGTTACTGTAGGTAGGAAAGAGATATGAGAGG</canonical_amplicon>
		<polymorphic_amplicon>GTACCTGCTGATTGTCTCTCTTCGCCGTAATCACCCTTCTAATATTCCCAAGCCAGCGGTCCATCATTGTGCCGATGGCCCGGATAAGGAGGACCGCAAGCTGAAATAAATTTTTTGAGACAAAATTTKTGGGAATGAGAAAGGAGTAAAAGTTTTCTCAAGTACAGTACCAGTCAATAAGATGTACATAAGCTGATTTTCAAGCATTTGATCATTTTCAGAACTTTAGTGCTCAGTAGTTAAGTTCCCGATCACTTTGAAAACCTTGGAGGGTGTAAAGCAAGCCTGAATTGAAAAATTTGCATTCAAAAATATTCGGGAACATTCCTAGTTTTTTCAGCTATTTGCTGATTTCTGAAAACACCCTTTTGTTCCCCGTTTTTTTTCTGAAAACGTGAACAAATAGGTGTTTGCTTCGAAACCAGCAAAAAGGTGAAAAACTAGGAATTTTGAAAAAATTTTGTGAATGCGAGTTTTTATTCTTGATCTGTTTTACATTCTCCAAAGTGATTCGAAACTTTACAGCCAAGCTTCAGACTCTTGAAAATTGCCGAAAATCGAATGAAAAATAGTTTTTTGTATATTTCATCAACCGTTACTGTAGGTAGGAAAGAGATATGAGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30101</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>57420</contig_pos>
        <strand></strand>
        <context>TGAATATGAA[G/T]AAGAAAATGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCAAGAAAAAAGAATTTGATGGATAGTAGAAAAAGTGGAATGAATATGAA</left_flank>
        <right_flank>AAGAAAATGTACACCATGCGAGAGCGAGATAAATGTAAGGACTACATTTG</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATGTGAATTGTAGCATACTACTCAGATTGCGTAAAGTGTAGGTTTGAAAACGTGACGGTGATTTTTCGAAGAATTTTTTCTGATTTTAATGTTTCAGTTTTTGTGATAAATGGTTCTAGACACTACTCTATTGTTATCATTAGTCATCGACCGGATTATAACTAGCAATCTGTTCGGTTGTTGACCTGTAAAAGGCGTTGTGAGCTCTCTGTGGCGAAAGTGGAGCCGGCTCTAGGTGCTGCGCCGAGCATGCCCGACTGATCTCGTCCTCGCTTCTCTGAGTGATTTGCACAGGTTTCGGTAGCATACACGTCGTCTCTTGCATTGGAGACGGCACGAATTTTTCTGAAGAAGATCTCGGGTTTTTTATATATTGCTTCTTTTATTGGTTTATTGGAAAAAAGGTCAGAAATGAGCACATACAGGCAAAAGTTATTTTCTCAAAAATCAAGAAAAAAGAATTTGATGGATAGTAGAAAAAGTGGAATGAATATGAAGAAGAAAATGTACACCATGCGAGAGCGAGATAAATGTAAGGACTACATTTGAAACTATTATTGTTGTTGATATTTTTGTATTTTTGGAAAAAAAGGCGTGGCAGTGATCTTGGAGATTTGTTCAACTGCAACAATAGCTCAAATGTGAAGAGTATTTTAGACTAGATTCACAGCATTTCCCGGGAATCAGATTCAGACACTGGACGCTCATAGACAATTTCCTGTTTAAAGCTCTCTTCAACAGTCTCATGCATTCCATGGCGGACCATTGATCCATTATCACTGTCATAAACATTGTTGGATGGTCTTCTAAGATAGTTCTGGGTCACTGCATATTCCCTTCTTCTGTATCCATCATCTGGCCCTCCAGATCGCTCGATATCCAAATTTCTTCCATTTCCATATCCATTTCCATATCCGTTTCTGTATCCTCCGTTACGCGATCCAGTGTCATATTTTCTACCGTACGCACTGTAGATATCATCCGGAGTACTGTACTTT</canonical>
            <polymorphic>TTATGTGAATTGTAGCATACTACTCAGATTGCGTAAAGTGTAGGTTTGAAAACGTGACGGTGATTTTTCGAAGAATTTTTTCTGATTTTAATGTTTCAGTTTTTGTGATAAATGGTTCTAGACACTACTCTATTGTTATCATTAGTCATCGACCGGATTATAACTAGCAATCTGTTCGGTTGTTGACCTGTAAAAGGCGTTGTGAGCTCTCTGTGGCGAAAGTGGAGCCGGCTCTAGGTGCTGCGCCGAGCATGCCCGACTGATCTCGTCCTCGCTTCTCTGAGTGATTTGCACAGGTTTCGGTAGCATACACGTCGTCTCTTGCATTGGAGACGGCACGAATTTTTCTGAAGAAGATCTCGGGTTTTTTATATATTGCTTCTTTTATTGGTTTATTGGAAAAAAGGTCAGAAATGAGCACATACAGGCAAAAGTTATTTTCTCAAAAATCAAGAAAAAAGAATTTGATGGATAGTAGAAAAAGTGGAATGAATATGAAKAAGAAAATGTACACCATGCGAGAGCGAGATAAATGTAAGGACTACATTTGAAACTATTATTGTTGTTGATATTTTTGTATTTTTGGAAAAAAAGGCGTGGCAGTGATCTTGGAGATTTGTTCAACTGCAACAATAGCTCAAATGTGAAGAGTATTTTAGACTAGATTCACAGCATTTCCCGGGAATCAGATTCAGACACTGGACGCTCATAGACAATTTCCTGTTTAAAGCTCTCTTCAACAGTCTCATGCATTCCATGGCGGACCATTGATCCATTATCACTGTCATAAACATTGTTGGATGGTCTTCTAAGATAGTTCTGGGTCACTGCATATTCCCTTCTTCTGTATCCATCATCTGGCCCTCCAGATCGCTCGATATCCAAATTTCTTCCATTTCCATATCCATTTCCATATCCGTTTCTGTATCCTCCGTTACGCGATCCAGTGTCATATTTTCTACCGTACGCACTGTAGATATCATCCGGAGTACTGTACTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGTCAGAAATGAGCACATAC</pcr_primer_p1>
		<pcr_primer_p2>CTCTTCACATTTGAGCTATTGTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGGTCAGAAATGAGCACATACAGGCAAAAGTTATTTTCTCAAAAATCAAGAAAAAAGAATTTGATGGATAGTAGAAAAAGTGGAATGAATATGAAGAAGAAAATGTACACCATGCGAGAGCGAGATAAATGTAAGGACTACATTTGAAACTATTATTGTTGTTGATATTTTTGTATTTTTGGAAAAAAAGGCGTGGCAGTGATCTTGGAGATTTGTTCAACTGCAACAATAGCTCAAATGTGAAGAG</canonical_amplicon>
		<polymorphic_amplicon>AAGGTCAGAAATGAGCACATACAGGCAAAAGTTATTTTCTCAAAAATCAAGAAAAAAGAATTTGATGGATAGTAGAAAAAGTGGAATGAATATGAAKAAGAAAATGTACACCATGCGAGAGCGAGATAAATGTAAGGACTACATTTGAAACTATTATTGTTGTTGATATTTTTGTATTTTTGGAAAAAAAGGCGTGGCAGTGATCTTGGAGATTTGTTCAACTGCAACAATAGCTCAAATGTGAAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30102</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>57507</contig_pos>
        <strand>+</strand>
        <context>GTATTTTTGG[A/G]AAAAAAGGCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGGACTACATTTGAAACTATTATTGTTGTTGATATTTTTGTATTTTTGG</left_flank>
        <right_flank>AAAAAAGGCGTGGCAGTGATCTTGGAGATTTGTTCAACTGCAACAATAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAATGTTTCAGTTTTTGTGATAAATGGTTCTAGACACTACTCTATTGTTATCATTAGTCATCGACCGGATTATAACTAGCAATCTGTTCGGTTGTTGACCTGTAAAAGGCGTTGTGAGCTCTCTGTGGCGAAAGTGGAGCCGGCTCTAGGTGCTGCGCCGAGCATGCCCGACTGATCTCGTCCTCGCTTCTCTGAGTGATTTGCACAGGTTTCGGTAGCATACACGTCGTCTCTTGCATTGGAGACGGCACGAATTTTTCTGAAGAAGATCTCGGGTTTTTTATATATTGCTTCTTTTATTGGTTTATTGGAAAAAAGGTCAGAAATGAGCACATACAGGCAAAAGTTATTTTCTCAAAAATCAAGAAAAAAGAATTTGATGGATAGTAGAAAAAGTGGAATGAATATGAAGAAGAAAATGTACACCATGCGAGAGCGAGATAAATGTAAGGACTACATTTGAAACTATTATTGTTGTTGATATTTTTGTATTTTTGGAAAAAAAGGCGTGGCAGTGATCTTGGAGATTTGTTCAACTGCAACAATAGCTCAAATGTGAAGAGTATTTTAGACTAGATTCACAGCATTTCCCGGGAATCAGATTCAGACACTGGACGCTCATAGACAATTTCCTGTTTAAAGCTCTCTTCAACAGTCTCATGCATTCCATGGCGGACCATTGATCCATTATCACTGTCATAAACATTGTTGGATGGTCTTCTAAGATAGTTCTGGGTCACTGCATATTCCCTTCTTCTGTATCCATCATCTGGCCCTCCAGATCGCTCGATATCCAAATTTCTTCCATTTCCATATCCATTTCCATATCCGTTTCTGTATCCTCCGTTACGCGATCCAGTGTCATATTTTCTACCGTACGCACTGTAGATATCATCCGGAGTACTGTACTTTTGCTCTTGGAATGCGTACTCGTCAACTAGACCATCATTGTTACGAAGGGCAGAATACTTGTTACCGGTAGAGGAGGAAGTAGCATTC</canonical>
            <polymorphic>TTAATGTTTCAGTTTTTGTGATAAATGGTTCTAGACACTACTCTATTGTTATCATTAGTCATCGACCGGATTATAACTAGCAATCTGTTCGGTTGTTGACCTGTAAAAGGCGTTGTGAGCTCTCTGTGGCGAAAGTGGAGCCGGCTCTAGGTGCTGCGCCGAGCATGCCCGACTGATCTCGTCCTCGCTTCTCTGAGTGATTTGCACAGGTTTCGGTAGCATACACGTCGTCTCTTGCATTGGAGACGGCACGAATTTTTCTGAAGAAGATCTCGGGTTTTTTATATATTGCTTCTTTTATTGGTTTATTGGAAAAAAGGTCAGAAATGAGCACATACAGGCAAAAGTTATTTTCTCAAAAATCAAGAAAAAAGAATTTGATGGATAGTAGAAAAAGTGGAATGAATATGAAGAAGAAAATGTACACCATGCGAGAGCGAGATAAATGTAAGGACTACATTTGAAACTATTATTGTTGTTGATATTTTTGTATTTTTGGRAAAAAAGGCGTGGCAGTGATCTTGGAGATTTGTTCAACTGCAACAATAGCTCAAATGTGAAGAGTATTTTAGACTAGATTCACAGCATTTCCCGGGAATCAGATTCAGACACTGGACGCTCATAGACAATTTCCTGTTTAAAGCTCTCTTCAACAGTCTCATGCATTCCATGGCGGACCATTGATCCATTATCACTGTCATAAACATTGTTGGATGGTCTTCTAAGATAGTTCTGGGTCACTGCATATTCCCTTCTTCTGTATCCATCATCTGGCCCTCCAGATCGCTCGATATCCAAATTTCTTCCATTTCCATATCCATTTCCATATCCGTTTCTGTATCCTCCGTTACGCGATCCAGTGTCATATTTTCTACCGTACGCACTGTAGATATCATCCGGAGTACTGTACTTTTGCTCTTGGAATGCGTACTCGTCAACTAGACCATCATTGTTACGAAGGGCAGAATACTTGTTACCGGTAGAGGAGGAAGTAGCATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGTCAGAAATGAGCACATAC</pcr_primer_p1>
		<pcr_primer_p2>CTCTTCACATTTGAGCTATTGTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGGTCAGAAATGAGCACATACAGGCAAAAGTTATTTTCTCAAAAATCAAGAAAAAAGAATTTGATGGATAGTAGAAAAAGTGGAATGAATATGAAGAAGAAAATGTACACCATGCGAGAGCGAGATAAATGTAAGGACTACATTTGAAACTATTATTGTTGTTGATATTTTTGTATTTTTGGAAAAAAAGGCGTGGCAGTGATCTTGGAGATTTGTTCAACTGCAACAATAGCTCAAATGTGAAGAG</canonical_amplicon>
		<polymorphic_amplicon>AAGGTCAGAAATGAGCACATACAGGCAAAAGTTATTTTCTCAAAAATCAAGAAAAAAGAATTTGATGGATAGTAGAAAAAGTGGAATGAATATGAAGAAGAAAATGTACACCATGCGAGAGCGAGATAAATGTAAGGACTACATTTGAAACTATTATTGTTGTTGATATTTTTGTATTTTTGGRAAAAAAGGCGTGGCAGTGATCTTGGAGATTTGTTCAACTGCAACAATAGCTCAAATGTGAAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30103</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>60439</contig_pos>
        <strand></strand>
        <context>gttttcaact[A/T]ttatctgktc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACT</left_flank>
        <right_flank>TTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCCTGGTAAAAAGTTAGGGACCGTGAGTGAGTCACAAGGTCTTATACGTTGATCACAAACCAGATTTCCATTAGACCACCCCCTATCATTTCGGCGCGGTTTATTTTTTTGTGGGGATGATGGAATTTGATAAAGTGTCGAGAATGATAGAGGTAGTGAAAGCTTTCAAAGTACTATTGGAACAGATTTATAGGTCAGAACGGAGACATTAGAATCGTAAAATAAGAGGAGAGAATTTTGGCGCCAGTGTTATCATAAGTGTGATTGATGTGTCTGGCAGTATGTATACTGTAGGCTTTTGTTTTCACAGGAAAAATAAAGATAAAAGAGATAAAGTTAATTTCACAAGTTTTACTTAAAGTGCCGCATTTTGACTATTTTTAGAAGCTCAATTGTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAATTAAAAAAAACAACACACAAGAGAATTGATTCAACTTCGAAAACAAACTTTAAAATCTTAGATTTTTCAATTTTCATACGTATCTAAAATATTTATTCACACCTAAACGTTAGAAAATCTTTAAGAAAAAAAATGCAAAAAAATCAACGAAAAACTGTAGAAATTTGGAAAGCAGGAAGAAGTA</canonical>
            <polymorphic>ATTTCCTGGTAAAAAGTTAGGGACCGTGAGTGAGTCACAAGGTCTTATACGTTGATCACAAACCAGATTTCCATTAGACCACCCCCTATCATTTCGGCGCGGTTTATTTTTTTGTGGGGATGATGGAATTTGATAAAGTGTCGAGAATGATAGAGGTAGTGAAAGCTTTCAAAGTACTATTGGAACAGATTTATAGGTCAGAACGGAGACATTAGAATCGTAAAATAAGAGGAGAGAATTTTGGCGCCAGTGTTATCATAAGTGTGATTGATGTGTCTGGCAGTATGTATACTGTAGGCTTTTGTTTTCACAGGAAAAATAAAGATAAAAGAGATAAAGTTAATTTCACAAGTTTTACTTAAAGTGCCGCATTTTGACTATTTTTAGAAGCTCAATTGTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTWTTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAATTAAAAAAAACAACACACAAGAGAATTGATTCAACTTCGAAAACAAACTTTAAAATCTTAGATTTTTCAATTTTCATACGTATCTAAAATATTTATTCACACCTAAACGTTAGAAAATCTTTAAGAAAAAAAATGCAAAAAAATCAACGAAAAACTGTAGAAATTTGGAAAGCAGGAAGAAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCACAAGTTTTACTTAAAGTGC</pcr_primer_p1>
		<pcr_primer_p2>CGTATTCTTTCGGAAGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>447</pcr_amplicon_size>
		<canonical_amplicon>TTTCACAAGTTTTACTTAAAGTGCCGCATTTTGACTATTTTTAGAAGCTCAATTGTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACG</canonical_amplicon>
		<polymorphic_amplicon>TTTCACAAGTTTTACTTAAAGTGCCGCATTTTGACTATTTTTAGAAGCTCAATTGTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTWTTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30104</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>60447</contig_pos>
        <strand></strand>
        <context>ctwttatctg[G/T]tctttgaaak</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTG</left_flank>
        <right_flank>TCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAAAAAGTTAGGGACCGTGAGTGAGTCACAAGGTCTTATACGTTGATCACAAACCAGATTTCCATTAGACCACCCCCTATCATTTCGGCGCGGTTTATTTTTTTGTGGGGATGATGGAATTTGATAAAGTGTCGAGAATGATAGAGGTAGTGAAAGCTTTCAAAGTACTATTGGAACAGATTTATAGGTCAGAACGGAGACATTAGAATCGTAAAATAAGAGGAGAGAATTTTGGCGCCAGTGTTATCATAAGTGTGATTGATGTGTCTGGCAGTATGTATACTGTAGGCTTTTGTTTTCACAGGAAAAATAAAGATAAAAGAGATAAAGTTAATTTCACAAGTTTTACTTAAAGTGCCGCATTTTGACTATTTTTAGAAGCTCAATTGTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAATTAAAAAAAACAACACACAAGAGAATTGATTCAACTTCGAAAACAAACTTTAAAATCTTAGATTTTTCAATTTTCATACGTATCTAAAATATTTATTCACACCTAAACGTTAGAAAATCTTTAAGAAAAAAAATGCAAAAAAATCAACGAAAAACTGTAGAAATTTGGAAAGCAGGAAGAAGTAGAAGTGTA</canonical>
            <polymorphic>GTAAAAAGTTAGGGACCGTGAGTGAGTCACAAGGTCTTATACGTTGATCACAAACCAGATTTCCATTAGACCACCCCCTATCATTTCGGCGCGGTTTATTTTTTTGTGGGGATGATGGAATTTGATAAAGTGTCGAGAATGATAGAGGTAGTGAAAGCTTTCAAAGTACTATTGGAACAGATTTATAGGTCAGAACGGAGACATTAGAATCGTAAAATAAGAGGAGAGAATTTTGGCGCCAGTGTTATCATAAGTGTGATTGATGTGTCTGGCAGTATGTATACTGTAGGCTTTTGTTTTCACAGGAAAAATAAAGATAAAAGAGATAAAGTTAATTTCACAAGTTTTACTTAAAGTGCCGCATTTTGACTATTTTTAGAAGCTCAATTGTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGKTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAATTAAAAAAAACAACACACAAGAGAATTGATTCAACTTCGAAAACAAACTTTAAAATCTTAGATTTTTCAATTTTCATACGTATCTAAAATATTTATTCACACCTAAACGTTAGAAAATCTTTAAGAAAAAAAATGCAAAAAAATCAACGAAAAACTGTAGAAATTTGGAAAGCAGGAAGAAGTAGAAGTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCACAAGTTTTACTTAAAGTGC</pcr_primer_p1>
		<pcr_primer_p2>CGTATTCTTTCGGAAGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>447</pcr_amplicon_size>
		<canonical_amplicon>TTTCACAAGTTTTACTTAAAGTGCCGCATTTTGACTATTTTTAGAAGCTCAATTGTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACG</canonical_amplicon>
		<polymorphic_amplicon>TTTCACAAGTTTTACTTAAAGTGCCGCATTTTGACTATTTTTAGAAGCTCAATTGTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGKTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30105</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>60457</contig_pos>
        <strand></strand>
        <context>ktctttgaaa[T/G]acaccccgtt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAA</left_flank>
        <right_flank>ACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGGACCGTGAGTGAGTCACAAGGTCTTATACGTTGATCACAAACCAGATTTCCATTAGACCACCCCCTATCATTTCGGCGCGGTTTATTTTTTTGTGGGGATGATGGAATTTGATAAAGTGTCGAGAATGATAGAGGTAGTGAAAGCTTTCAAAGTACTATTGGAACAGATTTATAGGTCAGAACGGAGACATTAGAATCGTAAAATAAGAGGAGAGAATTTTGGCGCCAGTGTTATCATAAGTGTGATTGATGTGTCTGGCAGTATGTATACTGTAGGCTTTTGTTTTCACAGGAAAAATAAAGATAAAAGAGATAAAGTTAATTTCACAAGTTTTACTTAAAGTGCCGCATTTTGACTATTTTTAGAAGCTCAATTGTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAATTAAAAAAAACAACACACAAGAGAATTGATTCAACTTCGAAAACAAACTTTAAAATCTTAGATTTTTCAATTTTCATACGTATCTAAAATATTTATTCACACCTAAACGTTAGAAAATCTTTAAGAAAAAAAATGCAAAAAAATCAACGAAAAACTGTAGAAATTTGGAAAGCAGGAAGAAGTAGAAGTGTATGGACAAACA</canonical>
            <polymorphic>AGGGACCGTGAGTGAGTCACAAGGTCTTATACGTTGATCACAAACCAGATTTCCATTAGACCACCCCCTATCATTTCGGCGCGGTTTATTTTTTTGTGGGGATGATGGAATTTGATAAAGTGTCGAGAATGATAGAGGTAGTGAAAGCTTTCAAAGTACTATTGGAACAGATTTATAGGTCAGAACGGAGACATTAGAATCGTAAAATAAGAGGAGAGAATTTTGGCGCCAGTGTTATCATAAGTGTGATTGATGTGTCTGGCAGTATGTATACTGTAGGCTTTTGTTTTCACAGGAAAAATAAAGATAAAAGAGATAAAGTTAATTTCACAAGTTTTACTTAAAGTGCCGCATTTTGACTATTTTTAGAAGCTCAATTGTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAAKACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAATTAAAAAAAACAACACACAAGAGAATTGATTCAACTTCGAAAACAAACTTTAAAATCTTAGATTTTTCAATTTTCATACGTATCTAAAATATTTATTCACACCTAAACGTTAGAAAATCTTTAAGAAAAAAAATGCAAAAAAATCAACGAAAAACTGTAGAAATTTGGAAAGCAGGAAGAAGTAGAAGTGTATGGACAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCACAAGTTTTACTTAAAGTGC</pcr_primer_p1>
		<pcr_primer_p2>CGTATTCTTTCGGAAGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>447</pcr_amplicon_size>
		<canonical_amplicon>TTTCACAAGTTTTACTTAAAGTGCCGCATTTTGACTATTTTTAGAAGCTCAATTGTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACG</canonical_amplicon>
		<polymorphic_amplicon>TTTCACAAGTTTTACTTAAAGTGCCGCATTTTGACTATTTTTAGAAGCTCAATTGTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAAKACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30106</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>60547</contig_pos>
        <strand></strand>
        <context>gcaattaaaa[A/T]attctgtgaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAA</left_flank>
        <right_flank>ATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTGTGGGGATGATGGAATTTGATAAAGTGTCGAGAATGATAGAGGTAGTGAAAGCTTTCAAAGTACTATTGGAACAGATTTATAGGTCAGAACGGAGACATTAGAATCGTAAAATAAGAGGAGAGAATTTTGGCGCCAGTGTTATCATAAGTGTGATTGATGTGTCTGGCAGTATGTATACTGTAGGCTTTTGTTTTCACAGGAAAAATAAAGATAAAAGAGATAAAGTTAATTTCACAAGTTTTACTTAAAGTGCCGCATTTTGACTATTTTTAGAAGCTCAATTGTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAATTAAAAAAAACAACACACAAGAGAATTGATTCAACTTCGAAAACAAACTTTAAAATCTTAGATTTTTCAATTTTCATACGTATCTAAAATATTTATTCACACCTAAACGTTAGAAAATCTTTAAGAAAAAAAATGCAAAAAAATCAACGAAAAACTGTAGAAATTTGGAAAGCAGGAAGAAGTAGAAGTGTATGGACAAACAAATCAGTAGGAGGGCAACCTAAGAAATAGAGGTAGGGAAGAGAAGAGAGATAAAATGTTTTATTTGGGTAACGAGAACTGTAGGACGCAA</canonical>
            <polymorphic>TTTTTGTGGGGATGATGGAATTTGATAAAGTGTCGAGAATGATAGAGGTAGTGAAAGCTTTCAAAGTACTATTGGAACAGATTTATAGGTCAGAACGGAGACATTAGAATCGTAAAATAAGAGGAGAGAATTTTGGCGCCAGTGTTATCATAAGTGTGATTGATGTGTCTGGCAGTATGTATACTGTAGGCTTTTGTTTTCACAGGAAAAATAAAGATAAAAGAGATAAAGTTAATTTCACAAGTTTTACTTAAAGTGCCGCATTTTGACTATTTTTAGAAGCTCAATTGTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAWATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAATTAAAAAAAACAACACACAAGAGAATTGATTCAACTTCGAAAACAAACTTTAAAATCTTAGATTTTTCAATTTTCATACGTATCTAAAATATTTATTCACACCTAAACGTTAGAAAATCTTTAAGAAAAAAAATGCAAAAAAATCAACGAAAAACTGTAGAAATTTGGAAAGCAGGAAGAAGTAGAAGTGTATGGACAAACAAATCAGTAGGAGGGCAACCTAAGAAATAGAGGTAGGGAAGAGAAGAGAGATAAAATGTTTTATTTGGGTAACGAGAACTGTAGGACGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>212 184 158 131 126 110 50 18 11</canonical_bands>
                <polymorphic_bands>284 212 184 131 110 50 18 11</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>131 118 110 105 93 69 52 50 49 45 43 39 27 25 18 11 8 7</canonical_bands>
                <polymorphic_bands>131 118 110 105 93 77 52 50 49 45 43 39 27 25 18 11 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCACAAGTTTTACTTAAAGTGC</pcr_primer_p1>
		<pcr_primer_p2>CGTATTCTTTCGGAAGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>447</pcr_amplicon_size>
		<canonical_amplicon>TTTCACAAGTTTTACTTAAAGTGCCGCATTTTGACTATTTTTAGAAGCTCAATTGTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACG</canonical_amplicon>
		<polymorphic_amplicon>TTTCACAAGTTTTACTTAAAGTGCCGCATTTTGACTATTTTTAGAAGCTCAATTGTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAWATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30107</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>60632</contig_pos>
        <strand></strand>
        <context>acacccgagc[A/T]tcagagtcaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGC</left_flank>
        <right_flank>TCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGTCAGAACGGAGACATTAGAATCGTAAAATAAGAGGAGAGAATTTTGGCGCCAGTGTTATCATAAGTGTGATTGATGTGTCTGGCAGTATGTATACTGTAGGCTTTTGTTTTCACAGGAAAAATAAAGATAAAAGAGATAAAGTTAATTTCACAAGTTTTACTTAAAGTGCCGCATTTTGACTATTTTTAGAAGCTCAATTGTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAATTAAAAAAAACAACACACAAGAGAATTGATTCAACTTCGAAAACAAACTTTAAAATCTTAGATTTTTCAATTTTCATACGTATCTAAAATATTTATTCACACCTAAACGTTAGAAAATCTTTAAGAAAAAAAATGCAAAAAAATCAACGAAAAACTGTAGAAATTTGGAAAGCAGGAAGAAGTAGAAGTGTATGGACAAACAAATCAGTAGGAGGGCAACCTAAGAAATAGAGGTAGGGAAGAGAAGAGAGATAAAATGTTTTATTTGGGTAACGAGAACTGTAGGACGCAAGCCGAAAGCCGCTTGGCATAAGTGCGTAGGTGCTTTCCTCCTTCCGAGTGGAGCAAACATGAAACAACTTTTTGGCTTCTATATA</canonical>
            <polymorphic>TAGGTCAGAACGGAGACATTAGAATCGTAAAATAAGAGGAGAGAATTTTGGCGCCAGTGTTATCATAAGTGTGATTGATGTGTCTGGCAGTATGTATACTGTAGGCTTTTGTTTTCACAGGAAAAATAAAGATAAAAGAGATAAAGTTAATTTCACAAGTTTTACTTAAAGTGCCGCATTTTGACTATTTTTAGAAGCTCAATTGTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCWTCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAATTAAAAAAAACAACACACAAGAGAATTGATTCAACTTCGAAAACAAACTTTAAAATCTTAGATTTTTCAATTTTCATACGTATCTAAAATATTTATTCACACCTAAACGTTAGAAAATCTTTAAGAAAAAAAATGCAAAAAAATCAACGAAAAACTGTAGAAATTTGGAAAGCAGGAAGAAGTAGAAGTGTATGGACAAACAAATCAGTAGGAGGGCAACCTAAGAAATAGAGGTAGGGAAGAGAAGAGAGATAAAATGTTTTATTTGGGTAACGAGAACTGTAGGACGCAAGCCGAAAGCCGCTTGGCATAAGTGCGTAGGTGCTTTCCTCCTTCCGAGTGGAGCAAACATGAAACAACTTTTTGGCTTCTATATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCACAAGTTTTACTTAAAGTGC</pcr_primer_p1>
		<pcr_primer_p2>CGTATTCTTTCGGAAGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>447</pcr_amplicon_size>
		<canonical_amplicon>TTTCACAAGTTTTACTTAAAGTGCCGCATTTTGACTATTTTTAGAAGCTCAATTGTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACG</canonical_amplicon>
		<polymorphic_amplicon>TTTCACAAGTTTTACTTAAAGTGCCGCATTTTGACTATTTTTAGAAGCTCAATTGTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCWTCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30108</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>60663</contig_pos>
        <strand></strand>
        <context>aaaattgttt[A/G]gccggcactg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTT</left_flank>
        <right_flank>GCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAGAGGAGAGAATTTTGGCGCCAGTGTTATCATAAGTGTGATTGATGTGTCTGGCAGTATGTATACTGTAGGCTTTTGTTTTCACAGGAAAAATAAAGATAAAAGAGATAAAGTTAATTTCACAAGTTTTACTTAAAGTGCCGCATTTTGACTATTTTTAGAAGCTCAATTGTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAATTAAAAAAAACAACACACAAGAGAATTGATTCAACTTCGAAAACAAACTTTAAAATCTTAGATTTTTCAATTTTCATACGTATCTAAAATATTTATTCACACCTAAACGTTAGAAAATCTTTAAGAAAAAAAATGCAAAAAAATCAACGAAAAACTGTAGAAATTTGGAAAGCAGGAAGAAGTAGAAGTGTATGGACAAACAAATCAGTAGGAGGGCAACCTAAGAAATAGAGGTAGGGAAGAGAAGAGAGATAAAATGTTTTATTTGGGTAACGAGAACTGTAGGACGCAAGCCGAAAGCCGCTTGGCATAAGTGCGTAGGTGCTTTCCTCCTTCCGAGTGGAGCAAACATGAAACAACTTTTTGGCTTCTATATATTTTCTTTTCGTCTCTTTTTCTCCTCTTACA</canonical>
            <polymorphic>ATAAGAGGAGAGAATTTTGGCGCCAGTGTTATCATAAGTGTGATTGATGTGTCTGGCAGTATGTATACTGTAGGCTTTTGTTTTCACAGGAAAAATAAAGATAAAAGAGATAAAGTTAATTTCACAAGTTTTACTTAAAGTGCCGCATTTTGACTATTTTTAGAAGCTCAATTGTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTRGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACGGTAGTTATTAAAGACAAAATAATAAATTAAAAAAAACAACACACAAGAGAATTGATTCAACTTCGAAAACAAACTTTAAAATCTTAGATTTTTCAATTTTCATACGTATCTAAAATATTTATTCACACCTAAACGTTAGAAAATCTTTAAGAAAAAAAATGCAAAAAAATCAACGAAAAACTGTAGAAATTTGGAAAGCAGGAAGAAGTAGAAGTGTATGGACAAACAAATCAGTAGGAGGGCAACCTAAGAAATAGAGGTAGGGAAGAGAAGAGAGATAAAATGTTTTATTTGGGTAACGAGAACTGTAGGACGCAAGCCGAAAGCCGCTTGGCATAAGTGCGTAGGTGCTTTCCTCCTTCCGAGTGGAGCAAACATGAAACAACTTTTTGGCTTCTATATATTTTCTTTTCGTCTCTTTTTCTCCTCTTACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>384 196 92 92 74 67 47 41 7</canonical_bands>
                <polymorphic_bands>476 196 92 74 67 47 41 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCACAAGTTTTACTTAAAGTGC</pcr_primer_p1>
		<pcr_primer_p2>CGTATTCTTTCGGAAGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>447</pcr_amplicon_size>
		<canonical_amplicon>TTTCACAAGTTTTACTTAAAGTGCCGCATTTTGACTATTTTTAGAAGCTCAATTGTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTAGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACG</canonical_amplicon>
		<polymorphic_amplicon>TTTCACAAGTTTTACTTAAAGTGCCGCATTTTGACTATTTTTAGAAGCTCAATTGTAAAGTTTCCAAACACTTTGAAAATTCTGGAAAGTGTAAAACAGACCTAGATTGAAAACTTTGCGTTTACAGAATTTTTTGAAAATTCCTAGTTTTCAACTATTATCTGGTCTTTGAAATACACCCCGTTTTGACCCATTTTGGTACTAAAAACATGAAAAATGTTTCTCTCAGAAACCGGCAAACAGCTCGAAAACTAGCAATTAAAAAATTCTGTGAATGCAAAGTTTTCAGGCTAGGGATGTTTTTTAATCTCCATGATTTCAAAAGTGGTCGGCAATTTGACACCCGAGCATCAGAGTCAAAAACAACTGAAAAATTGTTTRGCCGGCACTGTACTAAAGAAATATATTTTTACTAAATTGAAAATTTCAAACTTCCGAAAGAATACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30109</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>63002</contig_pos>
        <strand></strand>
        <context>aagtttcaga[A/T]cttcagaatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGA</left_flank>
        <right_flank>CTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCGTCTTGTGGGCAAAGATGTCGCCGTAAATAATTTATTTTTTGTTTGTCTCTGATGATAAACCGATTGTAATATCTTTATATGCAAATATCAATGTTGCGAAAAGGCTAATAAAATTGACAAGAATGTTTAGCAGGAGATTTATAGACATTGAAAAACCGAATGAACTTTTTGTACAATGATTCGGGGGTACAAGATTGGTGATTCGAGGGTACAAAATTCGTGGGTACAAACTATCAATGATTCTGGGATACAACCTATTTCATTTGGGGGTACAACGCTTGTGATTCGGGAGTACAATTTTTTTTAGGGAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATCTCAGAATTCTTCGAATTTCAAAACTTTGCAATCTCAGTATTTCGGAATTTGAAAATTTCGGAACTTCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAA</canonical>
            <polymorphic>CCCGTCTTGTGGGCAAAGATGTCGCCGTAAATAATTTATTTTTTGTTTGTCTCTGATGATAAACCGATTGTAATATCTTTATATGCAAATATCAATGTTGCGAAAAGGCTAATAAAATTGACAAGAATGTTTAGCAGGAGATTTATAGACATTGAAAAACCGAATGAACTTTTTGTACAATGATTCGGGGGTACAAGATTGGTGATTCGAGGGTACAAAATTCGTGGGTACAAACTATCAATGATTCTGGGATACAACCTATTTCATTTGGGGGTACAACGCTTGTGATTCGGGAGTACAATTTTTTTTAGGGAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATCTCAGAATTCTTCGAATTTCAAAACTTTGCAATCTCAGTATTTCGGAATTTGAAAATTTCGGAACTTCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAWCTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTCTGGGATACAACCTATTTC</pcr_primer_p1>
		<pcr_primer_p2>AGAACAATGTGACAATGAGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>357</pcr_amplicon_size>
		<canonical_amplicon>GATTCTGGGATACAACCTATTTCATTTGGGGGTACAACGCTTGTGATTCGGGAGTACAATTTTTTTTAGGGAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATCTCAGAATTCTTCGAATTTCAAAACTTTGCAATCTCAGTATTTCGGAATTTGAAAATTTCGGAACTTCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCT</canonical_amplicon>
		<polymorphic_amplicon>GATTCTGGGATACAACCTATTTCATTTGGGGGTACAACGCTTGTGATTCGGGAGTACAATTTTTTTTAGGGAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATCTCAGAATTCTTCGAATTTCAAAACTTTGCAATCTCAGTATTTCGGAATTTGAAAATTTCGGAACTTCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAWCTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30110</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>63029</contig_pos>
        <strand></strand>
        <context>cgtcagaatc[T/A]cagtattttg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATC</left_flank>
        <right_flank>CAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAATAATTTATTTTTTGTTTGTCTCTGATGATAAACCGATTGTAATATCTTTATATGCAAATATCAATGTTGCGAAAAGGCTAATAAAATTGACAAGAATGTTTAGCAGGAGATTTATAGACATTGAAAAACCGAATGAACTTTTTGTACAATGATTCGGGGGTACAAGATTGGTGATTCGAGGGTACAAAATTCGTGGGTACAAACTATCAATGATTCTGGGATACAACCTATTTCATTTGGGGGTACAACGCTTGTGATTCGGGAGTACAATTTTTTTTAGGGAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATCTCAGAATTCTTCGAATTTCAAAACTTTGCAATCTCAGTATTTCGGAATTTGAAAATTTCGGAACTTCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAA</canonical>
            <polymorphic>TAAATAATTTATTTTTTGTTTGTCTCTGATGATAAACCGATTGTAATATCTTTATATGCAAATATCAATGTTGCGAAAAGGCTAATAAAATTGACAAGAATGTTTAGCAGGAGATTTATAGACATTGAAAAACCGAATGAACTTTTTGTACAATGATTCGGGGGTACAAGATTGGTGATTCGAGGGTACAAAATTCGTGGGTACAAACTATCAATGATTCTGGGATACAACCTATTTCATTTGGGGGTACAACGCTTGTGATTCGGGAGTACAATTTTTTTTAGGGAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATCTCAGAATTCTTCGAATTTCAAAACTTTGCAATCTCAGTATTTCGGAATTTGAAAATTTCGGAACTTCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCWCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 322 96 48 33</canonical_bands>
                <polymorphic_bands>597 322 48 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTCTGGGATACAACCTATTTC</pcr_primer_p1>
		<pcr_primer_p2>AGAACAATGTGACAATGAGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>357</pcr_amplicon_size>
		<canonical_amplicon>GATTCTGGGATACAACCTATTTCATTTGGGGGTACAACGCTTGTGATTCGGGAGTACAATTTTTTTTAGGGAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATCTCAGAATTCTTCGAATTTCAAAACTTTGCAATCTCAGTATTTCGGAATTTGAAAATTTCGGAACTTCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCT</canonical_amplicon>
		<polymorphic_amplicon>GATTCTGGGATACAACCTATTTCATTTGGGGGTACAACGCTTGTGATTCGGGAGTACAATTTTTTTTAGGGAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATCTCAGAATTCTTCGAATTTCAAAACTTTGCAATCTCAGTATTTCGGAATTTGAAAATTTCGGAACTTCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCWCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30111</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>63040</contig_pos>
        <strand></strand>
        <context>cagtattttg[A/C]aatttctgaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTG</left_flank>
        <right_flank>AATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTGTTTGTCTCTGATGATAAACCGATTGTAATATCTTTATATGCAAATATCAATGTTGCGAAAAGGCTAATAAAATTGACAAGAATGTTTAGCAGGAGATTTATAGACATTGAAAAACCGAATGAACTTTTTGTACAATGATTCGGGGGTACAAGATTGGTGATTCGAGGGTACAAAATTCGTGGGTACAAACTATCAATGATTCTGGGATACAACCTATTTCATTTGGGGGTACAACGCTTGTGATTCGGGAGTACAATTTTTTTTAGGGAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATCTCAGAATTCTTCGAATTTCAAAACTTTGCAATCTCAGTATTTCGGAATTTGAAAATTTCGGAACTTCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATC</canonical>
            <polymorphic>TTTTTTGTTTGTCTCTGATGATAAACCGATTGTAATATCTTTATATGCAAATATCAATGTTGCGAAAAGGCTAATAAAATTGACAAGAATGTTTAGCAGGAGATTTATAGACATTGAAAAACCGAATGAACTTTTTGTACAATGATTCGGGGGTACAAGATTGGTGATTCGAGGGTACAAAATTCGTGGGTACAAACTATCAATGATTCTGGGATACAACCTATTTCATTTGGGGGTACAACGCTTGTGATTCGGGAGTACAATTTTTTTTAGGGAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATCTCAGAATTCTTCGAATTTCAAAACTTTGCAATCTCAGTATTTCGGAATTTGAAAATTTCGGAACTTCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGMAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>180 158 118 103 81 49 44 40 32 32 32 24 24 22 14 9 8 8 8 8 6</canonical_bands>
                <polymorphic_bands>180 158 118 103 81 49 44 40 40 32 32 24 24 22 14 9 8 8 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTCTGGGATACAACCTATTTC</pcr_primer_p1>
		<pcr_primer_p2>AGAACAATGTGACAATGAGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>357</pcr_amplicon_size>
		<canonical_amplicon>GATTCTGGGATACAACCTATTTCATTTGGGGGTACAACGCTTGTGATTCGGGAGTACAATTTTTTTTAGGGAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATCTCAGAATTCTTCGAATTTCAAAACTTTGCAATCTCAGTATTTCGGAATTTGAAAATTTCGGAACTTCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCT</canonical_amplicon>
		<polymorphic_amplicon>GATTCTGGGATACAACCTATTTCATTTGGGGGTACAACGCTTGTGATTCGGGAGTACAATTTTTTTTAGGGAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATCTCAGAATTCTTCGAATTTCAAAACTTTGCAATCTCAGTATTTCGGAATTTGAAAATTTCGGAACTTCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGMAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30112</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>63064</contig_pos>
        <strand></strand>
        <context>ccaaaaattg[T/C]gacaaaagtt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTG</left_flank>
        <right_flank>GACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCGATTGTAATATCTTTATATGCAAATATCAATGTTGCGAAAAGGCTAATAAAATTGACAAGAATGTTTAGCAGGAGATTTATAGACATTGAAAAACCGAATGAACTTTTTGTACAATGATTCGGGGGTACAAGATTGGTGATTCGAGGGTACAAAATTCGTGGGTACAAACTATCAATGATTCTGGGATACAACCTATTTCATTTGGGGGTACAACGCTTGTGATTCGGGAGTACAATTTTTTTTAGGGAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATCTCAGAATTCTTCGAATTTCAAAACTTTGCAATCTCAGTATTTCGGAATTTGAAAATTTCGGAACTTCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTT</canonical>
            <polymorphic>ACCGATTGTAATATCTTTATATGCAAATATCAATGTTGCGAAAAGGCTAATAAAATTGACAAGAATGTTTAGCAGGAGATTTATAGACATTGAAAAACCGAATGAACTTTTTGTACAATGATTCGGGGGTACAAGATTGGTGATTCGAGGGTACAAAATTCGTGGGTACAAACTATCAATGATTCTGGGATACAACCTATTTCATTTGGGGGTACAACGCTTGTGATTCGGGAGTACAATTTTTTTTAGGGAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATCTCAGAATTCTTCGAATTTCAAAACTTTGCAATCTCAGTATTTCGGAATTTGAAAATTTCGGAACTTCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGYGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>276 203 142 115 73 61 34 23 22 22 14 13 2</canonical_bands>
                <polymorphic_bands>290 203 142 115 73 61 34 23 22 22 13 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>498 476 26</canonical_bands>
                <polymorphic_bands>524 476</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>498 476 26</canonical_bands>
                <polymorphic_bands>524 476</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTCTGGGATACAACCTATTTC</pcr_primer_p1>
		<pcr_primer_p2>AATATGATACAAAATCAGAAAGAACA</pcr_primer_p2>
		<pcr_amplicon_size>377</pcr_amplicon_size>
		<canonical_amplicon>GATTCTGGGATACAACCTATTTCATTTGGGGGTACAACGCTTGTGATTCGGGAGTACAATTTTTTTTAGGGAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATCTCAGAATTCTTCGAATTTCAAAACTTTGCAATCTCAGTATTTCGGAATTTGAAAATTTCGGAACTTCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATT</canonical_amplicon>
		<polymorphic_amplicon>GATTCTGGGATACAACCTATTTCATTTGGGGGTACAACGCTTGTGATTCGGGAGTACAATTTTTTTTAGGGAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATCTCAGAATTCTTCGAATTTCAAAACTTTGCAATCTCAGTATTTCGGAATTTGAAAATTTCGGAACTTCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGYGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30113</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>63204</contig_pos>
        <strand>+</strand>
        <context>TTTGAAGTCT[C/T]GAAATTTCCK</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCT</left_flank>
        <right_flank>GAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATTCGAGGGTACAAAATTCGTGGGTACAAACTATCAATGATTCTGGGATACAACCTATTTCATTTGGGGGTACAACGCTTGTGATTCGGGAGTACAATTTTTTTTAGGGAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATCTCAGAATTCTTCGAATTTCAAAACTTTGCAATCTCAGTATTTCGGAATTTGAAAATTTCGGAACTTCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCTCATTTTTCCAACTTTTCTCAATTTTCGTGGTAATTGAAATTTTTCTCATTTCTTTTTTGCCTAAAAGGGTATAGTAA</canonical>
            <polymorphic>TGATTCGAGGGTACAAAATTCGTGGGTACAAACTATCAATGATTCTGGGATACAACCTATTTCATTTGGGGGTACAACGCTTGTGATTCGGGAGTACAATTTTTTTTAGGGAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATCTCAGAATTCTTCGAATTTCAAAACTTTGCAATCTCAGTATTTCGGAATTTGAAAATTTCGGAACTTCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTYGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCTCATTTTTCCAACTTTTCTCAATTTTCGTGGTAATTGAAATTTTTCTCATTTCTTTTTTGCCTAAAAGGGTATAGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTCATTGTCACATTGTTCTT</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCAAATTTGGAGAACC</pcr_primer_p2>
		<pcr_amplicon_size>220</pcr_amplicon_size>
		<canonical_amplicon>CTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>CTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTYGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30114</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>63214</contig_pos>
        <strand>+</strand>
        <context>YGAAATTTCC[G/T]GAAAGCAYAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCC</left_flank>
        <right_flank>GAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACAAAATTCGTGGGTACAAACTATCAATGATTCTGGGATACAACCTATTTCATTTGGGGGTACAACGCTTGTGATTCGGGAGTACAATTTTTTTTAGGGAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATCTCAGAATTCTTCGAATTTCAAAACTTTGCAATCTCAGTATTTCGGAATTTGAAAATTTCGGAACTTCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCTCATTTTTCCAACTTTTCTCAATTTTCGTGGTAATTGAAATTTTTCTCATTTCTTTTTTGCCTAAAAGGGTATAGTAATCCTACATGC</canonical>
            <polymorphic>GTACAAAATTCGTGGGTACAAACTATCAATGATTCTGGGATACAACCTATTTCATTTGGGGGTACAACGCTTGTGATTCGGGAGTACAATTTTTTTTAGGGAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATCTCAGAATTCTTCGAATTTCAAAACTTTGCAATCTCAGTATTTCGGAATTTGAAAATTTCGGAACTTCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCKGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCTCATTTTTCCAACTTTTCTCAATTTTCGTGGTAATTGAAATTTTTCTCATTTCTTTTTTGCCTAAAAGGGTATAGTAATCCTACATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTCATTGTCACATTGTTCTT</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCAAATTTGGAGAACC</pcr_primer_p2>
		<pcr_amplicon_size>220</pcr_amplicon_size>
		<canonical_amplicon>CTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>CTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCKGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30115</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>63222</contig_pos>
        <strand>+</strand>
        <context>CCKGAAAGCA[C/T]ACAATGRAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCA</left_flank>
        <right_flank>ACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGTGGGTACAAACTATCAATGATTCTGGGATACAACCTATTTCATTTGGGGGTACAACGCTTGTGATTCGGGAGTACAATTTTTTTTAGGGAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATCTCAGAATTCTTCGAATTTCAAAACTTTGCAATCTCAGTATTTCGGAATTTGAAAATTTCGGAACTTCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCTCATTTTTCCAACTTTTCTCAATTTTCGTGGTAATTGAAATTTTTCTCATTTCTTTTTTGCCTAAAAGGGTATAGTAATCCTACATGCAACACTTT</canonical>
            <polymorphic>TTCGTGGGTACAAACTATCAATGATTCTGGGATACAACCTATTTCATTTGGGGGTACAACGCTTGTGATTCGGGAGTACAATTTTTTTTAGGGAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATCTCAGAATTCTTCGAATTTCAAAACTTTGCAATCTCAGTATTTCGGAATTTGAAAATTTCGGAACTTCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCAYACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCTCATTTTTCCAACTTTTCTCAATTTTCGTGGTAATTGAAATTTTTCTCATTTCTTTTTTGCCTAAAAGGGTATAGTAATCCTACATGCAACACTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>295 276 115 73 62 61 34 23 22 14 13 6 4 2</canonical_bands>
                <polymorphic_bands>295 276 190 62 61 34 23 22 14 13 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCTCATTGTCACATTGTTCTT</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCAAATTTGGAGAACC</pcr_primer_p2>
		<pcr_amplicon_size>220</pcr_amplicon_size>
		<canonical_amplicon>CTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>CTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCAYACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30116</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>63229</contig_pos>
        <strand>+</strand>
        <context>GCAYACAATG[A/G]AGAACTGTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATG</left_flank>
        <right_flank>AGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACAAACTATCAATGATTCTGGGATACAACCTATTTCATTTGGGGGTACAACGCTTGTGATTCGGGAGTACAATTTTTTTTAGGGAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATCTCAGAATTCTTCGAATTTCAAAACTTTGCAATCTCAGTATTTCGGAATTTGAAAATTTCGGAACTTCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCTCATTTTTCCAACTTTTCTCAATTTTCGTGGTAATTGAAATTTTTCTCATTTCTTTTTTGCCTAAAAGGGTATAGTAATCCTACATGCAACACTTTTGAATAC</canonical>
            <polymorphic>GTACAAACTATCAATGATTCTGGGATACAACCTATTTCATTTGGGGGTACAACGCTTGTGATTCGGGAGTACAATTTTTTTTAGGGAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATCTCAGAATTCTTCGAATTTCAAAACTTTGCAATCTCAGTATTTCGGAATTTGAAAATTTCGGAACTTCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGRAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCTCATTTTTCCAACTTTTCTCAATTTTCGTGGTAATTGAAATTTTTCTCATTTCTTTTTTGCCTAAAAGGGTATAGTAATCCTACATGCAACACTTTTGAATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTCATTGTCACATTGTTCTT</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCAAATTTGGAGAACC</pcr_primer_p2>
		<pcr_amplicon_size>220</pcr_amplicon_size>
		<canonical_amplicon>CTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>CTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGRAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30117</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>63347</contig_pos>
        <strand>+</strand>
        <context>TGAAAAAATC[C/T]TTTTTTTWTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATC</left_flank>
        <right_flank>TTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCTCAGAATTCTTCGAATTTCAAAACTTTGCAATCTCAGTATTTCGGAATTTGAAAATTTCGGAACTTCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCTCATTTTTCCAACTTTTCTCAATTTTCGTGGTAATTGAAATTTTTCTCATTTCTTTTTTGCCTAAAAGGGTATAGTAATCCTACATGCAACACTTTTGAATACCTATGTGTGTGTTGCAAAACAATGTTTTATGGTGCTCCATAAATAATTTCGTTTTTTTCAAAGGCAGTTTTCTCTGCCATGGCTCGTTCTAATTTCAAAAAAATTTTTTCCTTGCACA</canonical>
            <polymorphic>AATCTCAGAATTCTTCGAATTTCAAAACTTTGCAATCTCAGTATTTCGGAATTTGAAAATTTCGGAACTTCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCYTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCTCATTTTTCCAACTTTTCTCAATTTTCGTGGTAATTGAAATTTTTCTCATTTCTTTTTTGCCTAAAAGGGTATAGTAATCCTACATGCAACACTTTTGAATACCTATGTGTGTGTTGCAAAACAATGTTTTATGGTGCTCCATAAATAATTTCGTTTTTTTCAAAGGCAGTTTTCTCTGCCATGGCTCGTTCTAATTTCAAAAAAATTTTTTCCTTGCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTAAAACATACTTGCATAATCAG</pcr_primer_p1>
		<pcr_primer_p2>GCAATTGAGAAAAATTGATAGAA</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>CTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGC</canonical_amplicon>
		<polymorphic_amplicon>CTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCYTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30118</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>63355</contig_pos>
        <strand>+</strand>
        <context>TCYTTTTTTT[A/T]TGGAMACTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTT</left_flank>
        <right_flank>TGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCTTCGAATTTCAAAACTTTGCAATCTCAGTATTTCGGAATTTGAAAATTTCGGAACTTCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCTCATTTTTCCAACTTTTCTCAATTTTCGTGGTAATTGAAATTTTTCTCATTTCTTTTTTGCCTAAAAGGGTATAGTAATCCTACATGCAACACTTTTGAATACCTATGTGTGTGTTGCAAAACAATGTTTTATGGTGCTCCATAAATAATTTCGTTTTTTTCAAAGGCAGTTTTCTCTGCCATGGCTCGTTCTAATTTCAAAAAAATTTTTTCCTTGCACACTCCATTA</canonical>
            <polymorphic>AATTCTTCGAATTTCAAAACTTTGCAATCTCAGTATTTCGGAATTTGAAAATTTCGGAACTTCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTWTGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCTCATTTTTCCAACTTTTCTCAATTTTCGTGGTAATTGAAATTTTTCTCATTTCTTTTTTGCCTAAAAGGGTATAGTAATCCTACATGCAACACTTTTGAATACCTATGTGTGTGTTGCAAAACAATGTTTTATGGTGCTCCATAAATAATTTCGTTTTTTTCAAAGGCAGTTTTCTCTGCCATGGCTCGTTCTAATTTCAAAAAAATTTTTTCCTTGCACACTCCATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTAAAACATACTTGCATAATCAG</pcr_primer_p1>
		<pcr_primer_p2>GCAATTGAGAAAAATTGATAGAA</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>CTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGC</canonical_amplicon>
		<polymorphic_amplicon>CTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTWTGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30119</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>63360</contig_pos>
        <strand>+</strand>
        <context>TTTTTWTGGA[A/C]ACTCTTATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGA</left_flank>
        <right_flank>ACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGAATTTCAAAACTTTGCAATCTCAGTATTTCGGAATTTGAAAATTTCGGAACTTCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCTCATTTTTCCAACTTTTCTCAATTTTCGTGGTAATTGAAATTTTTCTCATTTCTTTTTTGCCTAAAAGGGTATAGTAATCCTACATGCAACACTTTTGAATACCTATGTGTGTGTTGCAAAACAATGTTTTATGGTGCTCCATAAATAATTTCGTTTTTTTCAAAGGCAGTTTTCTCTGCCATGGCTCGTTCTAATTTCAAAAAAATTTTTTCCTTGCACACTCCATTAAGTCA</canonical>
            <polymorphic>TTCGAATTTCAAAACTTTGCAATCTCAGTATTTCGGAATTTGAAAATTTCGGAACTTCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGAMACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCTCATTTTTCCAACTTTTCTCAATTTTCGTGGTAATTGAAATTTTTCTCATTTCTTTTTTGCCTAAAAGGGTATAGTAATCCTACATGCAACACTTTTGAATACCTATGTGTGTGTTGCAAAACAATGTTTTATGGTGCTCCATAAATAATTTCGTTTTTTTCAAAGGCAGTTTTCTCTGCCATGGCTCGTTCTAATTTCAAAAAAATTTTTTCCTTGCACACTCCATTAAGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>295 205 115 82 73 62 34 23 23 22 18 14 13 13 2 2 2 2</canonical_bands>
                <polymorphic_bands>318 205 115 82 73 62 34 23 22 18 14 13 13 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTAAAACATACTTGCATAATCAG</pcr_primer_p1>
		<pcr_primer_p2>GCAATTGAGAAAAATTGATAGAA</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>CTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGC</canonical_amplicon>
		<polymorphic_amplicon>CTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGAMACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30120</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>63380</contig_pos>
        <strand></strand>
        <context>TTGAAAAATG[T/C]TTTACTTGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATG</left_flank>
        <right_flank>TTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCTCAGTATTTCGGAATTTGAAAATTTCGGAACTTCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCTCATTTTTCCAACTTTTCTCAATTTTCGTGGTAATTGAAATTTTTCTCATTTCTTTTTTGCCTAAAAGGGTATAGTAATCCTACATGCAACACTTTTGAATACCTATGTGTGTGTTGCAAAACAATGTTTTATGGTGCTCCATAAATAATTTCGTTTTTTTCAAAGGCAGTTTTCTCTGCCATGGCTCGTTCTAATTTCAAAAAAATTTTTTCCTTGCACACTCCATTAAGTCATTGAAAATCCATATGAAATA</canonical>
            <polymorphic>AATCTCAGTATTTCGGAATTTGAAAATTTCGGAACTTCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGYTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCTCATTTTTCCAACTTTTCTCAATTTTCGTGGTAATTGAAATTTTTCTCATTTCTTTTTTGCCTAAAAGGGTATAGTAATCCTACATGCAACACTTTTGAATACCTATGTGTGTGTTGCAAAACAATGTTTTATGGTGCTCCATAAATAATTTCGTTTTTTTCAAAGGCAGTTTTCTCTGCCATGGCTCGTTCTAATTTCAAAAAAATTTTTTCCTTGCACACTCCATTAAGTCATTGAAAATCCATATGAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTAAAACATACTTGCATAATCAG</pcr_primer_p1>
		<pcr_primer_p2>GCAATTGAGAAAAATTGATAGAA</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>CTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGC</canonical_amplicon>
		<polymorphic_amplicon>CTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGYTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30121</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>63416</contig_pos>
        <strand>+</strand>
        <context>TTTTTTCTAT[A/T]GACCCCAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTAT</left_flank>
        <right_flank>GACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCC</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCTCATTTTTCCAACTTTTCTCAATTTTCGTGGTAATTGAAATTTTTCTCATTTCTTTTTTGCCTAAAAGGGTATAGTAATCCTACATGCAACACTTTTGAATACCTATGTGTGTGTTGCAAAACAATGTTTTATGGTGCTCCATAAATAATTTCGTTTTTTTCAAAGGCAGTTTTCTCTGCCATGGCTCGTTCTAATTTCAAAAAAATTTTTTCCTTGCACACTCCATTAAGTCATTGAAAATCCATATGAAATAAGTGCCAAAACGATTCAGGTTTTCCGAGGAGAAATC</canonical>
            <polymorphic>TCAGAATCTGAAAATCTGAGAATTTGCGAATTTCAAAACTTCAAAATCTCCGAATTTCAGAACTTTTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATWGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCTCATTTTTCCAACTTTTCTCAATTTTCGTGGTAATTGAAATTTTTCTCATTTCTTTTTTGCCTAAAAGGGTATAGTAATCCTACATGCAACACTTTTGAATACCTATGTGTGTGTTGCAAAACAATGTTTTATGGTGCTCCATAAATAATTTCGTTTTTTTCAAAGGCAGTTTTCTCTGCCATGGCTCGTTCTAATTTCAAAAAAATTTTTTCCTTGCACACTCCATTAAGTCATTGAAAATCCATATGAAATAAGTGCCAAAACGATTCAGGTTTTCCGAGGAGAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTAAAACATACTTGCATAATCAG</pcr_primer_p1>
		<pcr_primer_p2>GCAATTGAGAAAAATTGATAGAA</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>CTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGC</canonical_amplicon>
		<polymorphic_amplicon>CTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATWGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30122</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>63481</contig_pos>
        <strand>+</strand>
        <context>CGAGACGGGC[A/C]GGGYSCTGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGC</left_flank>
        <right_flank>GGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCTCATTTTTCCAACTTTTCTCAATTTTCGTGGTAATTGAAATTTTTCTCATTTCTTTTTTGCCTAAAAGGGTATAGTAATCCTACATGCAACACTTTTGAATACCTATGTGTGTGTTGCAAAACAATGTTTTATGGTGCTCCATAAATAATTTCGTTTTTTTCAAAGGCAGTTTTCTCTGCCATGGCTCGTTCTAATTTCAAAAAAATTTTTTCCTTGCACACTCCATTAAGTCATTGAAAATCCATATGAAATAAGTGCCAAAACGATTCAGGTTTTCCGAGGAGAAATCATGGAAGAAAAGTGATTTTTCGCTACTTTTTTGTACGAACTTCTGCTCGGACTAAATGCAACCTA</canonical>
            <polymorphic>TTAAATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCMGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCTCATTTTTCCAACTTTTCTCAATTTTCGTGGTAATTGAAATTTTTCTCATTTCTTTTTTGCCTAAAAGGGTATAGTAATCCTACATGCAACACTTTTGAATACCTATGTGTGTGTTGCAAAACAATGTTTTATGGTGCTCCATAAATAATTTCGTTTTTTTCAAAGGCAGTTTTCTCTGCCATGGCTCGTTCTAATTTCAAAAAAATTTTTTCCTTGCACACTCCATTAAGTCATTGAAAATCCATATGAAATAAGTGCCAAAACGATTCAGGTTTTCCGAGGAGAAATCATGGAAGAAAAGTGATTTTTCGCTACTTTTTTGTACGAACTTCTGCTCGGACTAAATGCAACCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>474 281 188 26 16 10 5</canonical_bands>
                <polymorphic_bands>474 281 188 42 10 5</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>469 281 188 26 16 10 5 5</canonical_bands>
                <polymorphic_bands>469 281 188 42 10 5 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>471 279 204 31 10 5</canonical_bands>
                <polymorphic_bands>471 279 204 41 5</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>474 281 189 27 15 9 5</canonical_bands>
                <polymorphic_bands>474 281 189 42 9 5</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>301 204 185 170 94 31 10 5</canonical_bands>
                <polymorphic_bands>301 204 185 170 94 41 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>495 280 194 10 9 6 6</canonical_bands>
                <polymorphic_bands>495 280 194 16 9 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGATCAAAAAGTTTTCCATTT</pcr_primer_p1>
		<pcr_primer_p2>AGAAAAATTGGGAGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>TTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCMGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30123</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>63485</contig_pos>
        <strand>+</strand>
        <context>ACGGGCMGGG[C/T]SCTGAAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGG</left_flank>
        <right_flank>CCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATT</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCTCATTTTTCCAACTTTTCTCAATTTTCGTGGTAATTGAAATTTTTCTCATTTCTTTTTTGCCTAAAAGGGTATAGTAATCCTACATGCAACACTTTTGAATACCTATGTGTGTGTTGCAAAACAATGTTTTATGGTGCTCCATAAATAATTTCGTTTTTTTCAAAGGCAGTTTTCTCTGCCATGGCTCGTTCTAATTTCAAAAAAATTTTTTCCTTGCACACTCCATTAAGTCATTGAAAATCCATATGAAATAAGTGCCAAAACGATTCAGGTTTTCCGAGGAGAAATCATGGAAGAAAAGTGATTTTTCGCTACTTTTTTGTACGAACTTCTGCTCGGACTAAATGCAACCTAGTTG</canonical>
            <polymorphic>ATCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGYCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCTCATTTTTCCAACTTTTCTCAATTTTCGTGGTAATTGAAATTTTTCTCATTTCTTTTTTGCCTAAAAGGGTATAGTAATCCTACATGCAACACTTTTGAATACCTATGTGTGTGTTGCAAAACAATGTTTTATGGTGCTCCATAAATAATTTCGTTTTTTTCAAAGGCAGTTTTCTCTGCCATGGCTCGTTCTAATTTCAAAAAAATTTTTTCCTTGCACACTCCATTAAGTCATTGAAAATCCATATGAAATAAGTGCCAAAACGATTCAGGTTTTCCGAGGAGAAATCATGGAAGAAAAGTGATTTTTCGCTACTTTTTTGTACGAACTTCTGCTCGGACTAAATGCAACCTAGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>502 288 210</canonical_bands>
                <polymorphic_bands>712 288</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>499 274 147 70 10</canonical_bands>
                <polymorphic_bands>773 147 70 10</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGATCAAAAAGTTTTCCATTT</pcr_primer_p1>
		<pcr_primer_p2>AGAAAAATTGGGAGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>TTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGYCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30124</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>63486</contig_pos>
        <strand>+</strand>
        <context>CGGGCMGGGY[C/G]CTGAAAATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGT</left_flank>
        <right_flank>CTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCTCATTTTTCCAACTTTTCTCAATTTTCGTGGTAATTGAAATTTTTCTCATTTCTTTTTTGCCTAAAAGGGTATAGTAATCCTACATGCAACACTTTTGAATACCTATGTGTGTGTTGCAAAACAATGTTTTATGGTGCTCCATAAATAATTTCGTTTTTTTCAAAGGCAGTTTTCTCTGCCATGGCTCGTTCTAATTTCAAAAAAATTTTTTCCTTGCACACTCCATTAAGTCATTGAAAATCCATATGAAATAAGTGCCAAAACGATTCAGGTTTTCCGAGGAGAAATCATGGAAGAAAAGTGATTTTTCGCTACTTTTTTGTACGAACTTCTGCTCGGACTAAATGCAACCTAGTTGA</canonical>
            <polymorphic>TCTCAAAGTTTCAGAACTTCAGAATTTCAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTSCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCTCATTTTTCCAACTTTTCTCAATTTTCGTGGTAATTGAAATTTTTCTCATTTCTTTTTTGCCTAAAAGGGTATAGTAATCCTACATGCAACACTTTTGAATACCTATGTGTGTGTTGCAAAACAATGTTTTATGGTGCTCCATAAATAATTTCGTTTTTTTCAAAGGCAGTTTTCTCTGCCATGGCTCGTTCTAATTTCAAAAAAATTTTTTCCTTGCACACTCCATTAAGTCATTGAAAATCCATATGAAATAAGTGCCAAAACGATTCAGGTTTTCCGAGGAGAAATCATGGAAGAAAAGTGATTTTTCGCTACTTTTTTGTACGAACTTCTGCTCGGACTAAATGCAACCTAGTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>503 287 210</canonical_bands>
                <polymorphic_bands>713 287</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 274 210 14</canonical_bands>
                <polymorphic_bands>712 274 14</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>503 272 225</canonical_bands>
                <polymorphic_bands>728 272</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 275 194 10 9 6 6</canonical_bands>
                <polymorphic_bands>506 275 194 10 9 6</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>500 274 146 70 10</canonical_bands>
                <polymorphic_bands>774 146 70 10</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGATCAAAAAGTTTTCCATTT</pcr_primer_p1>
		<pcr_primer_p2>AGAAAAATTGGGAGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>TTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTSCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30125</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>63513</contig_pos>
        <strand>+</strand>
        <context>AAACCCGGCC[A/C]GGCAAGTATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCC</left_flank>
        <right_flank>GGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTT</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCTCATTTTTCCAACTTTTCTCAATTTTCGTGGTAATTGAAATTTTTCTCATTTCTTTTTTGCCTAAAAGGGTATAGTAATCCTACATGCAACACTTTTGAATACCTATGTGTGTGTTGCAAAACAATGTTTTATGGTGCTCCATAAATAATTTCGTTTTTTTCAAAGGCAGTTTTCTCTGCCATGGCTCGTTCTAATTTCAAAAAAATTTTTTCCTTGCACACTCCATTAAGTCATTGAAAATCCATATGAAATAAGTGCCAAAACGATTCAGGTTTTCCGAGGAGAAATCATGGAAGAAAAGTGATTTTTCGCTACTTTTTTGTACGAACTTCTGCTCGGACTAAATGCAACCTAGTTGAGCACAAGTATTAGGTTGGTCCTTATGG</canonical>
            <polymorphic>CAGAACGTCAGAATCTCAGTATTTTGAAATTTCTGAATTTCCAAAAATTGTGACAAAAGTTTTTCACTTCTCATTGTCACATTGTTCTTTCTGATTTTGTATCATATTTTTCACTCTTCATGAAAAAAAATTGTGGAAAATGTTGGGCATCGGCTGAAAGGCAGGAAATGTTTTTTTAATTTTGAAGTCTTGAAATTTCCTGAAAGCACACAATGGAGAACTGTAAAACATACTTGCATAATCAGGGCCCGGCCCGGCGGGACCGGGTTCTCCAAATTTGAATTTTTTTTTTGAAATTTCAGTCATTTTTTCAAAATGTTTTGTGAAAAAATCTTTTTTTTATGGACACTCTTATTTTGAAAAATGTTTTACTTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCMGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCTCATTTTTCCAACTTTTCTCAATTTTCGTGGTAATTGAAATTTTTCTCATTTCTTTTTTGCCTAAAAGGGTATAGTAATCCTACATGCAACACTTTTGAATACCTATGTGTGTGTTGCAAAACAATGTTTTATGGTGCTCCATAAATAATTTCGTTTTTTTCAAAGGCAGTTTTCTCTGCCATGGCTCGTTCTAATTTCAAAAAAATTTTTTCCTTGCACACTCCATTAAGTCATTGAAAATCCATATGAAATAAGTGCCAAAACGATTCAGGTTTTCCGAGGAGAAATCATGGAAGAAAAGTGATTTTTCGCTACTTTTTTGTACGAACTTCTGCTCGGACTAAATGCAACCTAGTTGAGCACAAGTATTAGGTTGGTCCTTATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGATCAAAAAGTTTTCCATTT</pcr_primer_p1>
		<pcr_primer_p2>AGAAAAATTGGGAGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCAGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>TTGATCAAAAAGTTTTCCATTTTTTTCTATTGACCCCAAAAATTTTTTCGAAAAGACAGGAAAATTTTCTTCTGAAAACCCGGGCCGAGACGGGCCGGGTCCTGAAAATTCTGAAAAAAACCCGGCCMGGCAAGTATGCTGTAAAATATTCTATCAATTTTTCTCAATTGCTTTCTTTTCTCAATTCTATCTCATTCCTTTTGTTTCTCAATATTCTTTCGTTTTTTCCTCCCAATTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30126</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>149821</contig_pos>
        <strand>+</strand>
        <context>AAGTGGCGAA[A/T]GTGATTAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCGTTCACTCCATCAAATCTGAAAATTAAAACCTATGCTCAAGTGGCGAA</left_flank>
        <right_flank>GTGATTAAAAGCCACCAACCTGGATCTTCATGACTTTTTTCCAGCACTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATCTTAATGGTTGATGAACCTTTTTTTTAGTTAGTGGGAACTGTCTGGAAAAATTGGAGAGTTAACTACCAGGGCGGCAAGGCGTGCGGTGAATAGAGAATATTTGTAGGCGGCAGAAAACGTTGGAATTGTAGATAATAGAGAATAGTTGAACTGTTGACAAGGTGGCCCAGGAAGCTAAGTTAAGGTGGCGAAAGTGTTGAAAATCACTAGCCTGGTTACTCATGTTTTTTTACAGCAGTTTCAAAATTCTTGATGCGACGCACATCCATTGCATACCGCTTGACGCACACCGACGTCTCGAAAATTAAAATTTTTCGAGTCTCTTCCAGAATTTTCCATAAACGAGGTCGCACCAAGGAAATTTGTCTTCAGATGTTCTTGTTTTTCCATGATTGCTTCATTTTTGAGGCGTTTTTGTGTGTTGCTGCAATTTTTGTTTCTCTACCGTTCACTCCATCAAATCTGAAAATTAAAACCTATGCTCAAGTGGCGAAAGTGATTAAAAGCCACCAACCTGGATCTTCATGACTTTTTTCCAGCACTCCCAAGCTTTTTCATGCGATGATCCACCATCCCATATTGCTATTCATATTGCCACCGACATCTTGAAAATCCATTTTTGCAGAAACTTCGCCTCTCTTTCTTTCAAAAATGTAACATAATCGCAAATTAGTCGGAAAATAAGTACACAGGGAATTCAACCCAAAGAATTGAAAATTAAGAAAAATGAAACCAGCTTTATCAAAAACTACTTTACTCGTACAAATAAAAAAAAAAGATCGAGTGAGTTTCAGTTAAAAATGGTAAATTTTGAGAGAGCGAAAGTGAAAGTTTAAAATTCTGAAATTATTTTGAAATTTTGAAATGTTCAAAAAATCTTGCGGATTTCCAAAAATTTAAAACCAGTGAAAAAGCAGAATTTGACATGTATGACTTTTTTTTCAGATTATTAACCTTCAGCAATTTTCGAATTATCTAAATTGACAATTTTAAAC</canonical>
            <polymorphic>GAATCTTAATGGTTGATGAACCTTTTTTTTAGTTAGTGGGAACTGTCTGGAAAAATTGGAGAGTTAACTACCAGGGCGGCAAGGCGTGCGGTGAATAGAGAATATTTGTAGGCGGCAGAAAACGTTGGAATTGTAGATAATAGAGAATAGTTGAACTGTTGACAAGGTGGCCCAGGAAGCTAAGTTAAGGTGGCGAAAGTGTTGAAAATCACTAGCCTGGTTACTCATGTTTTTTTACAGCAGTTTCAAAATTCTTGATGCGACGCACATCCATTGCATACCGCTTGACGCACACCGACGTCTCGAAAATTAAAATTTTTCGAGTCTCTTCCAGAATTTTCCATAAACGAGGTCGCACCAAGGAAATTTGTCTTCAGATGTTCTTGTTTTTCCATGATTGCTTCATTTTTGAGGCGTTTTTGTGTGTTGCTGCAATTTTTGTTTCTCTACCGTTCACTCCATCAAATCTGAAAATTAAAACCTATGCTCAAGTGGCGAAWGTGATTAAAAGCCACCAACCTGGATCTTCATGACTTTTTTCCAGCACTCCCAAGCTTTTTCATGCGATGATCCACCATCCCATATTGCTATTCATATTGCCACCGACATCTTGAAAATCCATTTTTGCAGAAACTTCGCCTCTCTTTCTTTCAAAAATGTAACATAATCGCAAATTAGTCGGAAAATAAGTACACAGGGAATTCAACCCAAAGAATTGAAAATTAAGAAAAATGAAACCAGCTTTATCAAAAACTACTTTACTCGTACAAATAAAAAAAAAAGATCGAGTGAGTTTCAGTTAAAAATGGTAAATTTTGAGAGAGCGAAAGTGAAAGTTTAAAATTCTGAAATTATTTTGAAATTTTGAAATGTTCAAAAAATCTTGCGGATTTCCAAAAATTTAAAACCAGTGAAAAAGCAGAATTTGACATGTATGACTTTTTTTTCAGATTATTAACCTTCAGCAATTTTCGAATTATCTAAATTGACAATTTTAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTGTTTCTCTACCGTTCA</pcr_primer_p1>
		<pcr_primer_p2>CGACTAATTTGCGATTATGTTAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTGTTTCTCTACCGTTCACTCCATCAAATCTGAAAATTAAAACCTATGCTCAAGTGGCGAAAGTGATTAAAAGCCACCAACCTGGATCTTCATGACTTTTTTCCAGCACTCCCAAGCTTTTTCATGCGATGATCCACCATCCCATATTGCTATTCATATTGCCACCGACATCTTGAAAATCCATTTTTGCAGAAACTTCGCCTCTCTTTCTTTCAAAAATGTAACATAATCGCAAATTAGTCG</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTGTTTCTCTACCGTTCACTCCATCAAATCTGAAAATTAAAACCTATGCTCAAGTGGCGAAWGTGATTAAAAGCCACCAACCTGGATCTTCATGACTTTTTTCCAGCACTCCCAAGCTTTTTCATGCGATGATCCACCATCCCATATTGCTATTCATATTGCCACCGACATCTTGAAAATCCATTTTTGCAGAAACTTCGCCTCTCTTTCTTTCAAAAATGTAACATAATCGCAAATTAGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30127</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>149907</contig_pos>
        <strand>+</strand>
        <context>CATCCCATAT[C/T]GCTATTCATA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTCCAGCACTCCCAAGCTTTTTCATGCGATGATCCACCATCCCATAT</left_flank>
        <right_flank>GCTATTCATATTGCCACCGACATCTTGAAAATCCATTTTTGCAGAAACTT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCGGTGAATAGAGAATATTTGTAGGCGGCAGAAAACGTTGGAATTGTAGATAATAGAGAATAGTTGAACTGTTGACAAGGTGGCCCAGGAAGCTAAGTTAAGGTGGCGAAAGTGTTGAAAATCACTAGCCTGGTTACTCATGTTTTTTTACAGCAGTTTCAAAATTCTTGATGCGACGCACATCCATTGCATACCGCTTGACGCACACCGACGTCTCGAAAATTAAAATTTTTCGAGTCTCTTCCAGAATTTTCCATAAACGAGGTCGCACCAAGGAAATTTGTCTTCAGATGTTCTTGTTTTTCCATGATTGCTTCATTTTTGAGGCGTTTTTGTGTGTTGCTGCAATTTTTGTTTCTCTACCGTTCACTCCATCAAATCTGAAAATTAAAACCTATGCTCAAGTGGCGAAAGTGATTAAAAGCCACCAACCTGGATCTTCATGACTTTTTTCCAGCACTCCCAAGCTTTTTCATGCGATGATCCACCATCCCATATTGCTATTCATATTGCCACCGACATCTTGAAAATCCATTTTTGCAGAAACTTCGCCTCTCTTTCTTTCAAAAATGTAACATAATCGCAAATTAGTCGGAAAATAAGTACACAGGGAATTCAACCCAAAGAATTGAAAATTAAGAAAAATGAAACCAGCTTTATCAAAAACTACTTTACTCGTACAAATAAAAAAAAAAGATCGAGTGAGTTTCAGTTAAAAATGGTAAATTTTGAGAGAGCGAAAGTGAAAGTTTAAAATTCTGAAATTATTTTGAAATTTTGAAATGTTCAAAAAATCTTGCGGATTTCCAAAAATTTAAAACCAGTGAAAAAGCAGAATTTGACATGTATGACTTTTTTTTCAGATTATTAACCTTCAGCAATTTTCGAATTATCTAAATTGACAATTTTAAACTGAAAATTGAAACAATATTGAATTTCGCGATCACTTTACTGATTCTTCAAATAGTGGCTCCACTCGATGACCATTTTTTGCGCCTC</canonical>
            <polymorphic>TGCGGTGAATAGAGAATATTTGTAGGCGGCAGAAAACGTTGGAATTGTAGATAATAGAGAATAGTTGAACTGTTGACAAGGTGGCCCAGGAAGCTAAGTTAAGGTGGCGAAAGTGTTGAAAATCACTAGCCTGGTTACTCATGTTTTTTTACAGCAGTTTCAAAATTCTTGATGCGACGCACATCCATTGCATACCGCTTGACGCACACCGACGTCTCGAAAATTAAAATTTTTCGAGTCTCTTCCAGAATTTTCCATAAACGAGGTCGCACCAAGGAAATTTGTCTTCAGATGTTCTTGTTTTTCCATGATTGCTTCATTTTTGAGGCGTTTTTGTGTGTTGCTGCAATTTTTGTTTCTCTACCGTTCACTCCATCAAATCTGAAAATTAAAACCTATGCTCAAGTGGCGAAAGTGATTAAAAGCCACCAACCTGGATCTTCATGACTTTTTTCCAGCACTCCCAAGCTTTTTCATGCGATGATCCACCATCCCATATYGCTATTCATATTGCCACCGACATCTTGAAAATCCATTTTTGCAGAAACTTCGCCTCTCTTTCTTTCAAAAATGTAACATAATCGCAAATTAGTCGGAAAATAAGTACACAGGGAATTCAACCCAAAGAATTGAAAATTAAGAAAAATGAAACCAGCTTTATCAAAAACTACTTTACTCGTACAAATAAAAAAAAAAGATCGAGTGAGTTTCAGTTAAAAATGGTAAATTTTGAGAGAGCGAAAGTGAAAGTTTAAAATTCTGAAATTATTTTGAAATTTTGAAATGTTCAAAAAATCTTGCGGATTTCCAAAAATTTAAAACCAGTGAAAAAGCAGAATTTGACATGTATGACTTTTTTTTCAGATTATTAACCTTCAGCAATTTTCGAATTATCTAAATTGACAATTTTAAACTGAAAATTGAAACAATATTGAATTTCGCGATCACTTTACTGATTCTTCAAATAGTGGCTCCACTCGATGACCATTTTTTGCGCCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCATCAAATCTGAAAATTAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAATTCCCTGTGTACTTATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCCATCAAATCTGAAAATTAAAACCTATGCTCAAGTGGCGAAAGTGATTAAAAGCCACCAACCTGGATCTTCATGACTTTTTTCCAGCACTCCCAAGCTTTTTCATGCGATGATCCACCATCCCATATTGCTATTCATATTGCCACCGACATCTTGAAAATCCATTTTTGCAGAAACTTCGCCTCTCTTTCTTTCAAAAATGTAACATAATCGCAAATTAGTCGGAAAATAAGTACACAGGGAATTCAA</canonical_amplicon>
		<polymorphic_amplicon>CTCCATCAAATCTGAAAATTAAAACCTATGCTCAAGTGGCGAAAGTGATTAAAAGCCACCAACCTGGATCTTCATGACTTTTTTCCAGCACTCCCAAGCTTTTTCATGCGATGATCCACCATCCCATATYGCTATTCATATTGCCACCGACATCTTGAAAATCCATTTTTGCAGAAACTTCGCCTCTCTTTCTTTCAAAAATGTAACATAATCGCAAATTAGTCGGAAAATAAGTACACAGGGAATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30128</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>149958</contig_pos>
        <strand>+</strand>
        <context>GCAGAAACTT[C/T]GCCTCTCTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTATTCATATTGCCACCGACATCTTGAAAATCCATTTTTGCAGAAACTT</left_flank>
        <right_flank>GCCTCTCTTTCTTTCAAAAATGTAACATAATCGCAAATTAGTCGGAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATAGAGAATAGTTGAACTGTTGACAAGGTGGCCCAGGAAGCTAAGTTAAGGTGGCGAAAGTGTTGAAAATCACTAGCCTGGTTACTCATGTTTTTTTACAGCAGTTTCAAAATTCTTGATGCGACGCACATCCATTGCATACCGCTTGACGCACACCGACGTCTCGAAAATTAAAATTTTTCGAGTCTCTTCCAGAATTTTCCATAAACGAGGTCGCACCAAGGAAATTTGTCTTCAGATGTTCTTGTTTTTCCATGATTGCTTCATTTTTGAGGCGTTTTTGTGTGTTGCTGCAATTTTTGTTTCTCTACCGTTCACTCCATCAAATCTGAAAATTAAAACCTATGCTCAAGTGGCGAAAGTGATTAAAAGCCACCAACCTGGATCTTCATGACTTTTTTCCAGCACTCCCAAGCTTTTTCATGCGATGATCCACCATCCCATATTGCTATTCATATTGCCACCGACATCTTGAAAATCCATTTTTGCAGAAACTTCGCCTCTCTTTCTTTCAAAAATGTAACATAATCGCAAATTAGTCGGAAAATAAGTACACAGGGAATTCAACCCAAAGAATTGAAAATTAAGAAAAATGAAACCAGCTTTATCAAAAACTACTTTACTCGTACAAATAAAAAAAAAAGATCGAGTGAGTTTCAGTTAAAAATGGTAAATTTTGAGAGAGCGAAAGTGAAAGTTTAAAATTCTGAAATTATTTTGAAATTTTGAAATGTTCAAAAAATCTTGCGGATTTCCAAAAATTTAAAACCAGTGAAAAAGCAGAATTTGACATGTATGACTTTTTTTTCAGATTATTAACCTTCAGCAATTTTCGAATTATCTAAATTGACAATTTTAAACTGAAAATTGAAACAATATTGAATTTCGCGATCACTTTACTGATTCTTCAAATAGTGGCTCCACTCGATGACCATTTTTTGCGCCTCCACAACATTCTCCTGAAAACGGAATTTACACAAATGAAATAACACGAATGA</canonical>
            <polymorphic>TAATAGAGAATAGTTGAACTGTTGACAAGGTGGCCCAGGAAGCTAAGTTAAGGTGGCGAAAGTGTTGAAAATCACTAGCCTGGTTACTCATGTTTTTTTACAGCAGTTTCAAAATTCTTGATGCGACGCACATCCATTGCATACCGCTTGACGCACACCGACGTCTCGAAAATTAAAATTTTTCGAGTCTCTTCCAGAATTTTCCATAAACGAGGTCGCACCAAGGAAATTTGTCTTCAGATGTTCTTGTTTTTCCATGATTGCTTCATTTTTGAGGCGTTTTTGTGTGTTGCTGCAATTTTTGTTTCTCTACCGTTCACTCCATCAAATCTGAAAATTAAAACCTATGCTCAAGTGGCGAAAGTGATTAAAAGCCACCAACCTGGATCTTCATGACTTTTTTCCAGCACTCCCAAGCTTTTTCATGCGATGATCCACCATCCCATATTGCTATTCATATTGCCACCGACATCTTGAAAATCCATTTTTGCAGAAACTTYGCCTCTCTTTCTTTCAAAAATGTAACATAATCGCAAATTAGTCGGAAAATAAGTACACAGGGAATTCAACCCAAAGAATTGAAAATTAAGAAAAATGAAACCAGCTTTATCAAAAACTACTTTACTCGTACAAATAAAAAAAAAAGATCGAGTGAGTTTCAGTTAAAAATGGTAAATTTTGAGAGAGCGAAAGTGAAAGTTTAAAATTCTGAAATTATTTTGAAATTTTGAAATGTTCAAAAAATCTTGCGGATTTCCAAAAATTTAAAACCAGTGAAAAAGCAGAATTTGACATGTATGACTTTTTTTTCAGATTATTAACCTTCAGCAATTTTCGAATTATCTAAATTGACAATTTTAAACTGAAAATTGAAACAATATTGAATTTCGCGATCACTTTACTGATTCTTCAAATAGTGGCTCCACTCGATGACCATTTTTTGCGCCTCCACAACATTCTCCTGAAAACGGAATTTACACAAATGAAATAACACGAATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCATCAAATCTGAAAATTAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAATTCCCTGTGTACTTATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCCATCAAATCTGAAAATTAAAACCTATGCTCAAGTGGCGAAAGTGATTAAAAGCCACCAACCTGGATCTTCATGACTTTTTTCCAGCACTCCCAAGCTTTTTCATGCGATGATCCACCATCCCATATTGCTATTCATATTGCCACCGACATCTTGAAAATCCATTTTTGCAGAAACTTCGCCTCTCTTTCTTTCAAAAATGTAACATAATCGCAAATTAGTCGGAAAATAAGTACACAGGGAATTCAA</canonical_amplicon>
		<polymorphic_amplicon>CTCCATCAAATCTGAAAATTAAAACCTATGCTCAAGTGGCGAAAGTGATTAAAAGCCACCAACCTGGATCTTCATGACTTTTTTCCAGCACTCCCAAGCTTTTTCATGCGATGATCCACCATCCCATATTGCTATTCATATTGCCACCGACATCTTGAAAATCCATTTTTGCAGAAACTTYGCCTCTCTTTCTTTCAAAAATGTAACATAATCGCAAATTAGTCGGAAAATAAGTACACAGGGAATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30129</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>150030</contig_pos>
        <strand>+</strand>
        <context>GAATTCAACC[C/T]AAAGAATTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTAACATAATCGCAAATTAGTCGGAAAATAAGTACACAGGGAATTCAACC</left_flank>
        <right_flank>AAAGAATTGAAAATTAAGAAAAATGAAACCAGCTTTATCAAAAACTACTT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTAGCCTGGTTACTCATGTTTTTTTACAGCAGTTTCAAAATTCTTGATGCGACGCACATCCATTGCATACCGCTTGACGCACACCGACGTCTCGAAAATTAAAATTTTTCGAGTCTCTTCCAGAATTTTCCATAAACGAGGTCGCACCAAGGAAATTTGTCTTCAGATGTTCTTGTTTTTCCATGATTGCTTCATTTTTGAGGCGTTTTTGTGTGTTGCTGCAATTTTTGTTTCTCTACCGTTCACTCCATCAAATCTGAAAATTAAAACCTATGCTCAAGTGGCGAAAGTGATTAAAAGCCACCAACCTGGATCTTCATGACTTTTTTCCAGCACTCCCAAGCTTTTTCATGCGATGATCCACCATCCCATATTGCTATTCATATTGCCACCGACATCTTGAAAATCCATTTTTGCAGAAACTTCGCCTCTCTTTCTTTCAAAAATGTAACATAATCGCAAATTAGTCGGAAAATAAGTACACAGGGAATTCAACCCAAAGAATTGAAAATTAAGAAAAATGAAACCAGCTTTATCAAAAACTACTTTACTCGTACAAATAAAAAAAAAAGATCGAGTGAGTTTCAGTTAAAAATGGTAAATTTTGAGAGAGCGAAAGTGAAAGTTTAAAATTCTGAAATTATTTTGAAATTTTGAAATGTTCAAAAAATCTTGCGGATTTCCAAAAATTTAAAACCAGTGAAAAAGCAGAATTTGACATGTATGACTTTTTTTTCAGATTATTAACCTTCAGCAATTTTCGAATTATCTAAATTGACAATTTTAAACTGAAAATTGAAACAATATTGAATTTCGCGATCACTTTACTGATTCTTCAAATAGTGGCTCCACTCGATGACCATTTTTTGCGCCTCCACAACATTCTCCTGAAAACGGAATTTACACAAATGAAATAACACGAATGAAAAATTGATTTTTACCTCGCAGAGGCCACAATGCACCATTTCTGCGACACTATCCAAGATCGCTTGTAGAAT</canonical>
            <polymorphic>CACTAGCCTGGTTACTCATGTTTTTTTACAGCAGTTTCAAAATTCTTGATGCGACGCACATCCATTGCATACCGCTTGACGCACACCGACGTCTCGAAAATTAAAATTTTTCGAGTCTCTTCCAGAATTTTCCATAAACGAGGTCGCACCAAGGAAATTTGTCTTCAGATGTTCTTGTTTTTCCATGATTGCTTCATTTTTGAGGCGTTTTTGTGTGTTGCTGCAATTTTTGTTTCTCTACCGTTCACTCCATCAAATCTGAAAATTAAAACCTATGCTCAAGTGGCGAAAGTGATTAAAAGCCACCAACCTGGATCTTCATGACTTTTTTCCAGCACTCCCAAGCTTTTTCATGCGATGATCCACCATCCCATATTGCTATTCATATTGCCACCGACATCTTGAAAATCCATTTTTGCAGAAACTTCGCCTCTCTTTCTTTCAAAAATGTAACATAATCGCAAATTAGTCGGAAAATAAGTACACAGGGAATTCAACCYAAAGAATTGAAAATTAAGAAAAATGAAACCAGCTTTATCAAAAACTACTTTACTCGTACAAATAAAAAAAAAAGATCGAGTGAGTTTCAGTTAAAAATGGTAAATTTTGAGAGAGCGAAAGTGAAAGTTTAAAATTCTGAAATTATTTTGAAATTTTGAAATGTTCAAAAAATCTTGCGGATTTCCAAAAATTTAAAACCAGTGAAAAAGCAGAATTTGACATGTATGACTTTTTTTTCAGATTATTAACCTTCAGCAATTTTCGAATTATCTAAATTGACAATTTTAAACTGAAAATTGAAACAATATTGAATTTCGCGATCACTTTACTGATTCTTCAAATAGTGGCTCCACTCGATGACCATTTTTTGCGCCTCCACAACATTCTCCTGAAAACGGAATTTACACAAATGAAATAACACGAATGAAAAATTGATTTTTACCTCGCAGAGGCCACAATGCACCATTTCTGCGACACTATCCAAGATCGCTTGTAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTGGATCTTCATGACTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTACGAGTAAAGTAGTTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CCTGGATCTTCATGACTTTTTTCCAGCACTCCCAAGCTTTTTCATGCGATGATCCACCATCCCATATTGCTATTCATATTGCCACCGACATCTTGAAAATCCATTTTTGCAGAAACTTCGCCTCTCTTTCTTTCAAAAATGTAACATAATCGCAAATTAGTCGGAAAATAAGTACACAGGGAATTCAACCCAAAGAATTGAAAATTAAGAAAAATGAAACCAGCTTTATCAAAAACTACTTTACTCGTACAAA</canonical_amplicon>
		<polymorphic_amplicon>CCTGGATCTTCATGACTTTTTTCCAGCACTCCCAAGCTTTTTCATGCGATGATCCACCATCCCATATTGCTATTCATATTGCCACCGACATCTTGAAAATCCATTTTTGCAGAAACTTCGCCTCTCTTTCTTTCAAAAATGTAACATAATCGCAAATTAGTCGGAAAATAAGTACACAGGGAATTCAACCYAAAGAATTGAAAATTAAGAAAAATGAAACCAGCTTTATCAAAAACTACTTTACTCGTACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30130</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>150066</contig_pos>
        <strand>+</strand>
        <context>AAACCAGCTT[G/T]ATCAAAAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAGGGAATTCAACCCAAAGAATTGAAAATTAAGAAAAATGAAACCAGCTT</left_flank>
        <right_flank>ATCAAAAACTACTTTACTCGTACAAATAAAAAAAAAAGATCGAGTGAGTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAATTCTTGATGCGACGCACATCCATTGCATACCGCTTGACGCACACCGACGTCTCGAAAATTAAAATTTTTCGAGTCTCTTCCAGAATTTTCCATAAACGAGGTCGCACCAAGGAAATTTGTCTTCAGATGTTCTTGTTTTTCCATGATTGCTTCATTTTTGAGGCGTTTTTGTGTGTTGCTGCAATTTTTGTTTCTCTACCGTTCACTCCATCAAATCTGAAAATTAAAACCTATGCTCAAGTGGCGAAAGTGATTAAAAGCCACCAACCTGGATCTTCATGACTTTTTTCCAGCACTCCCAAGCTTTTTCATGCGATGATCCACCATCCCATATTGCTATTCATATTGCCACCGACATCTTGAAAATCCATTTTTGCAGAAACTTCGCCTCTCTTTCTTTCAAAAATGTAACATAATCGCAAATTAGTCGGAAAATAAGTACACAGGGAATTCAACCCAAAGAATTGAAAATTAAGAAAAATGAAACCAGCTTTATCAAAAACTACTTTACTCGTACAAATAAAAAAAAAAGATCGAGTGAGTTTCAGTTAAAAATGGTAAATTTTGAGAGAGCGAAAGTGAAAGTTTAAAATTCTGAAATTATTTTGAAATTTTGAAATGTTCAAAAAATCTTGCGGATTTCCAAAAATTTAAAACCAGTGAAAAAGCAGAATTTGACATGTATGACTTTTTTTTCAGATTATTAACCTTCAGCAATTTTCGAATTATCTAAATTGACAATTTTAAACTGAAAATTGAAACAATATTGAATTTCGCGATCACTTTACTGATTCTTCAAATAGTGGCTCCACTCGATGACCATTTTTTGCGCCTCCACAACATTCTCCTGAAAACGGAATTTACACAAATGAAATAACACGAATGAAAAATTGATTTTTACCTCGCAGAGGCCACAATGCACCATTTCTGCGACACTATCCAAGATCGCTTGTAGAATCCCATTTCTTTGGGATAGATCTTCGTAAGCCGGGTG</canonical>
            <polymorphic>TCAAAATTCTTGATGCGACGCACATCCATTGCATACCGCTTGACGCACACCGACGTCTCGAAAATTAAAATTTTTCGAGTCTCTTCCAGAATTTTCCATAAACGAGGTCGCACCAAGGAAATTTGTCTTCAGATGTTCTTGTTTTTCCATGATTGCTTCATTTTTGAGGCGTTTTTGTGTGTTGCTGCAATTTTTGTTTCTCTACCGTTCACTCCATCAAATCTGAAAATTAAAACCTATGCTCAAGTGGCGAAAGTGATTAAAAGCCACCAACCTGGATCTTCATGACTTTTTTCCAGCACTCCCAAGCTTTTTCATGCGATGATCCACCATCCCATATTGCTATTCATATTGCCACCGACATCTTGAAAATCCATTTTTGCAGAAACTTCGCCTCTCTTTCTTTCAAAAATGTAACATAATCGCAAATTAGTCGGAAAATAAGTACACAGGGAATTCAACCCAAAGAATTGAAAATTAAGAAAAATGAAACCAGCTTKATCAAAAACTACTTTACTCGTACAAATAAAAAAAAAAGATCGAGTGAGTTTCAGTTAAAAATGGTAAATTTTGAGAGAGCGAAAGTGAAAGTTTAAAATTCTGAAATTATTTTGAAATTTTGAAATGTTCAAAAAATCTTGCGGATTTCCAAAAATTTAAAACCAGTGAAAAAGCAGAATTTGACATGTATGACTTTTTTTTCAGATTATTAACCTTCAGCAATTTTCGAATTATCTAAATTGACAATTTTAAACTGAAAATTGAAACAATATTGAATTTCGCGATCACTTTACTGATTCTTCAAATAGTGGCTCCACTCGATGACCATTTTTTGCGCCTCCACAACATTCTCCTGAAAACGGAATTTACACAAATGAAATAACACGAATGAAAAATTGATTTTTACCTCGCAGAGGCCACAATGCACCATTTCTGCGACACTATCCAAGATCGCTTGTAGAATCCCATTTCTTTGGGATAGATCTTCGTAAGCCGGGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTCTCTTTCTTTCAAAAATGTA</pcr_primer_p1>
		<pcr_primer_p2>TTTAAACTTTCACTTTCGCTCT</pcr_primer_p2>
		<pcr_amplicon_size>204</pcr_amplicon_size>
		<canonical_amplicon>CCTCTCTTTCTTTCAAAAATGTAACATAATCGCAAATTAGTCGGAAAATAAGTACACAGGGAATTCAACCCAAAGAATTGAAAATTAAGAAAAATGAAACCAGCTTTATCAAAAACTACTTTACTCGTACAAATAAAAAAAAAAGATCGAGTGAGTTTCAGTTAAAAATGGTAAATTTTGAGAGAGCGAAAGTGAAAGTTTAAA</canonical_amplicon>
		<polymorphic_amplicon>CCTCTCTTTCTTTCAAAAATGTAACATAATCGCAAATTAGTCGGAAAATAAGTACACAGGGAATTCAACCCAAAGAATTGAAAATTAAGAAAAATGAAACCAGCTTKATCAAAAACTACTTTACTCGTACAAATAAAAAAAAAAGATCGAGTGAGTTTCAGTTAAAAATGGTAAATTTTGAGAGAGCGAAAGTGAAAGTTTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30131</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>150094</contig_pos>
        <strand>+</strand>
        <context>TCGTACAAAT[A/G]AAAAAAAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAAGAAAAATGAAACCAGCTTTATCAAAAACTACTTTACTCGTACAAAT</left_flank>
        <right_flank>AAAAAAAAAGATCGAGTGAGTTTCAGTTAAAAATGGTAAATTTTGAGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCATACCGCTTGACGCACACCGACGTCTCGAAAATTAAAATTTTTCGAGTCTCTTCCAGAATTTTCCATAAACGAGGTCGCACCAAGGAAATTTGTCTTCAGATGTTCTTGTTTTTCCATGATTGCTTCATTTTTGAGGCGTTTTTGTGTGTTGCTGCAATTTTTGTTTCTCTACCGTTCACTCCATCAAATCTGAAAATTAAAACCTATGCTCAAGTGGCGAAAGTGATTAAAAGCCACCAACCTGGATCTTCATGACTTTTTTCCAGCACTCCCAAGCTTTTTCATGCGATGATCCACCATCCCATATTGCTATTCATATTGCCACCGACATCTTGAAAATCCATTTTTGCAGAAACTTCGCCTCTCTTTCTTTCAAAAATGTAACATAATCGCAAATTAGTCGGAAAATAAGTACACAGGGAATTCAACCCAAAGAATTGAAAATTAAGAAAAATGAAACCAGCTTTATCAAAAACTACTTTACTCGTACAAATAAAAAAAAAAGATCGAGTGAGTTTCAGTTAAAAATGGTAAATTTTGAGAGAGCGAAAGTGAAAGTTTAAAATTCTGAAATTATTTTGAAATTTTGAAATGTTCAAAAAATCTTGCGGATTTCCAAAAATTTAAAACCAGTGAAAAAGCAGAATTTGACATGTATGACTTTTTTTTCAGATTATTAACCTTCAGCAATTTTCGAATTATCTAAATTGACAATTTTAAACTGAAAATTGAAACAATATTGAATTTCGCGATCACTTTACTGATTCTTCAAATAGTGGCTCCACTCGATGACCATTTTTTGCGCCTCCACAACATTCTCCTGAAAACGGAATTTACACAAATGAAATAACACGAATGAAAAATTGATTTTTACCTCGCAGAGGCCACAATGCACCATTTCTGCGACACTATCCAAGATCGCTTGTAGAATCCCATTTCTTTGGGATAGATCTTCGTAAGCCGGGTGGCCTTTCTTGGGAACTCCATGGAAGGAG</canonical>
            <polymorphic>TTGCATACCGCTTGACGCACACCGACGTCTCGAAAATTAAAATTTTTCGAGTCTCTTCCAGAATTTTCCATAAACGAGGTCGCACCAAGGAAATTTGTCTTCAGATGTTCTTGTTTTTCCATGATTGCTTCATTTTTGAGGCGTTTTTGTGTGTTGCTGCAATTTTTGTTTCTCTACCGTTCACTCCATCAAATCTGAAAATTAAAACCTATGCTCAAGTGGCGAAAGTGATTAAAAGCCACCAACCTGGATCTTCATGACTTTTTTCCAGCACTCCCAAGCTTTTTCATGCGATGATCCACCATCCCATATTGCTATTCATATTGCCACCGACATCTTGAAAATCCATTTTTGCAGAAACTTCGCCTCTCTTTCTTTCAAAAATGTAACATAATCGCAAATTAGTCGGAAAATAAGTACACAGGGAATTCAACCCAAAGAATTGAAAATTAAGAAAAATGAAACCAGCTTTATCAAAAACTACTTTACTCGTACAAATRAAAAAAAAAGATCGAGTGAGTTTCAGTTAAAAATGGTAAATTTTGAGAGAGCGAAAGTGAAAGTTTAAAATTCTGAAATTATTTTGAAATTTTGAAATGTTCAAAAAATCTTGCGGATTTCCAAAAATTTAAAACCAGTGAAAAAGCAGAATTTGACATGTATGACTTTTTTTTCAGATTATTAACCTTCAGCAATTTTCGAATTATCTAAATTGACAATTTTAAACTGAAAATTGAAACAATATTGAATTTCGCGATCACTTTACTGATTCTTCAAATAGTGGCTCCACTCGATGACCATTTTTTGCGCCTCCACAACATTCTCCTGAAAACGGAATTTACACAAATGAAATAACACGAATGAAAAATTGATTTTTACCTCGCAGAGGCCACAATGCACCATTTCTGCGACACTATCCAAGATCGCTTGTAGAATCCCATTTCTTTGGGATAGATCTTCGTAAGCCGGGTGGCCTTTCTTGGGAACTCCATGGAAGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTAAGAAAAATGAAACCAG</pcr_primer_p1>
		<pcr_primer_p2>TGCTGAAGGTTAATAATCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTAAGAAAAATGAAACCAGCTTTATCAAAAACTACTTTACTCGTACAAATAAAAAAAAAAGATCGAGTGAGTTTCAGTTAAAAATGGTAAATTTTGAGAGAGCGAAAGTGAAAGTTTAAAATTCTGAAATTATTTTGAAATTTTGAAATGTTCAAAAAATCTTGCGGATTTCCAAAAATTTAAAACCAGTGAAAAAGCAGAATTTGACATGTATGACTTTTTTTTCAGATTATTAACCTTCAGCA</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTAAGAAAAATGAAACCAGCTTTATCAAAAACTACTTTACTCGTACAAATRAAAAAAAAAGATCGAGTGAGTTTCAGTTAAAAATGGTAAATTTTGAGAGAGCGAAAGTGAAAGTTTAAAATTCTGAAATTATTTTGAAATTTTGAAATGTTCAAAAAATCTTGCGGATTTCCAAAAATTTAAAACCAGTGAAAAAGCAGAATTTGACATGTATGACTTTTTTTTCAGATTATTAACCTTCAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30132</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>150226</contig_pos>
        <strand>+</strand>
        <context>CAAAAATTTA[A/T]AACCAGTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTGAAATTTTGAAATGTTCAAAAAATCTTGCGGATTTCCAAAAATTTA</left_flank>
        <right_flank>AACCAGTGAAAAAGCAGAATTTGACATGTATGACTTTTTTTTCAGATTAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTGAGGCGTTTTTGTGTGTTGCTGCAATTTTTGTTTCTCTACCGTTCACTCCATCAAATCTGAAAATTAAAACCTATGCTCAAGTGGCGAAAGTGATTAAAAGCCACCAACCTGGATCTTCATGACTTTTTTCCAGCACTCCCAAGCTTTTTCATGCGATGATCCACCATCCCATATTGCTATTCATATTGCCACCGACATCTTGAAAATCCATTTTTGCAGAAACTTCGCCTCTCTTTCTTTCAAAAATGTAACATAATCGCAAATTAGTCGGAAAATAAGTACACAGGGAATTCAACCCAAAGAATTGAAAATTAAGAAAAATGAAACCAGCTTTATCAAAAACTACTTTACTCGTACAAATAAAAAAAAAAGATCGAGTGAGTTTCAGTTAAAAATGGTAAATTTTGAGAGAGCGAAAGTGAAAGTTTAAAATTCTGAAATTATTTTGAAATTTTGAAATGTTCAAAAAATCTTGCGGATTTCCAAAAATTTAAAACCAGTGAAAAAGCAGAATTTGACATGTATGACTTTTTTTTCAGATTATTAACCTTCAGCAATTTTCGAATTATCTAAATTGACAATTTTAAACTGAAAATTGAAACAATATTGAATTTCGCGATCACTTTACTGATTCTTCAAATAGTGGCTCCACTCGATGACCATTTTTTGCGCCTCCACAACATTCTCCTGAAAACGGAATTTACACAAATGAAATAACACGAATGAAAAATTGATTTTTACCTCGCAGAGGCCACAATGCACCATTTCTGCGACACTATCCAAGATCGCTTGTAGAATCCCATTTCTTTGGGATAGATCTTCGTAAGCCGGGTGGCCTTTCTTGGGAACTCCATGGAAGGAGTTCACCTGAAATGAAATTCAATAAGCAACATTTTAAAAAGCCGATAAACTAACAATTTTCTCTCCCAGCATCTCGAGCTGACAATGCAGCTGGAACACTGTGGCCTTCTTTGATTCCATGATGTCTGGAAAA</canonical>
            <polymorphic>TTTTTGAGGCGTTTTTGTGTGTTGCTGCAATTTTTGTTTCTCTACCGTTCACTCCATCAAATCTGAAAATTAAAACCTATGCTCAAGTGGCGAAAGTGATTAAAAGCCACCAACCTGGATCTTCATGACTTTTTTCCAGCACTCCCAAGCTTTTTCATGCGATGATCCACCATCCCATATTGCTATTCATATTGCCACCGACATCTTGAAAATCCATTTTTGCAGAAACTTCGCCTCTCTTTCTTTCAAAAATGTAACATAATCGCAAATTAGTCGGAAAATAAGTACACAGGGAATTCAACCCAAAGAATTGAAAATTAAGAAAAATGAAACCAGCTTTATCAAAAACTACTTTACTCGTACAAATAAAAAAAAAAGATCGAGTGAGTTTCAGTTAAAAATGGTAAATTTTGAGAGAGCGAAAGTGAAAGTTTAAAATTCTGAAATTATTTTGAAATTTTGAAATGTTCAAAAAATCTTGCGGATTTCCAAAAATTTAWAACCAGTGAAAAAGCAGAATTTGACATGTATGACTTTTTTTTCAGATTATTAACCTTCAGCAATTTTCGAATTATCTAAATTGACAATTTTAAACTGAAAATTGAAACAATATTGAATTTCGCGATCACTTTACTGATTCTTCAAATAGTGGCTCCACTCGATGACCATTTTTTGCGCCTCCACAACATTCTCCTGAAAACGGAATTTACACAAATGAAATAACACGAATGAAAAATTGATTTTTACCTCGCAGAGGCCACAATGCACCATTTCTGCGACACTATCCAAGATCGCTTGTAGAATCCCATTTCTTTGGGATAGATCTTCGTAAGCCGGGTGGCCTTTCTTGGGAACTCCATGGAAGGAGTTCACCTGAAATGAAATTCAATAAGCAACATTTTAAAAAGCCGATAAACTAACAATTTTCTCTCCCAGCATCTCGAGCTGACAATGCAGCTGGAACACTGTGGCCTTCTTTGATTCCATGATGTCTGGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>434 311 98 93 64</canonical_bands>
                <polymorphic_bands>434 311 157 98</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>311 218 99 77 70 64 53 40 38 30</canonical_bands>
                <polymorphic_bands>311 218 117 99 77 70 40 38 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAAATTTTGAGAGAGCGAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GCCACTATTTGAAGAATCAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAAATTTTGAGAGAGCGAAAGTGAAAGTTTAAAATTCTGAAATTATTTTGAAATTTTGAAATGTTCAAAAAATCTTGCGGATTTCCAAAAATTTAAAACCAGTGAAAAAGCAGAATTTGACATGTATGACTTTTTTTTCAGATTATTAACCTTCAGCAATTTTCGAATTATCTAAATTGACAATTTTAAACTGAAAATTGAAACAATATTGAATTTCGCGATCACTTTACTGATTCTTCAAATAGTGGC</canonical_amplicon>
		<polymorphic_amplicon>GTAAATTTTGAGAGAGCGAAAGTGAAAGTTTAAAATTCTGAAATTATTTTGAAATTTTGAAATGTTCAAAAAATCTTGCGGATTTCCAAAAATTTAWAACCAGTGAAAAAGCAGAATTTGACATGTATGACTTTTTTTTCAGATTATTAACCTTCAGCAATTTTCGAATTATCTAAATTGACAATTTTAAACTGAAAATTGAAACAATATTGAATTTCGCGATCACTTTACTGATTCTTCAAATAGTGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30133</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>150243</contig_pos>
        <strand>+</strand>
        <context>TGAAAAAGCA[A/G]ARTTTGACAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTCAAAAAATCTTGCGGATTTCCAAAAATTTAAAACCAGTGAAAAAGCA</left_flank>
        <right_flank>AATTTGACATGTATGACTTTTTTTTCAGATTATTAACCTTCAGCAATTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGTTGCTGCAATTTTTGTTTCTCTACCGTTCACTCCATCAAATCTGAAAATTAAAACCTATGCTCAAGTGGCGAAAGTGATTAAAAGCCACCAACCTGGATCTTCATGACTTTTTTCCAGCACTCCCAAGCTTTTTCATGCGATGATCCACCATCCCATATTGCTATTCATATTGCCACCGACATCTTGAAAATCCATTTTTGCAGAAACTTCGCCTCTCTTTCTTTCAAAAATGTAACATAATCGCAAATTAGTCGGAAAATAAGTACACAGGGAATTCAACCCAAAGAATTGAAAATTAAGAAAAATGAAACCAGCTTTATCAAAAACTACTTTACTCGTACAAATAAAAAAAAAAGATCGAGTGAGTTTCAGTTAAAAATGGTAAATTTTGAGAGAGCGAAAGTGAAAGTTTAAAATTCTGAAATTATTTTGAAATTTTGAAATGTTCAAAAAATCTTGCGGATTTCCAAAAATTTAAAACCAGTGAAAAAGCAGAATTTGACATGTATGACTTTTTTTTCAGATTATTAACCTTCAGCAATTTTCGAATTATCTAAATTGACAATTTTAAACTGAAAATTGAAACAATATTGAATTTCGCGATCACTTTACTGATTCTTCAAATAGTGGCTCCACTCGATGACCATTTTTTGCGCCTCCACAACATTCTCCTGAAAACGGAATTTACACAAATGAAATAACACGAATGAAAAATTGATTTTTACCTCGCAGAGGCCACAATGCACCATTTCTGCGACACTATCCAAGATCGCTTGTAGAATCCCATTTCTTTGGGATAGATCTTCGTAAGCCGGGTGGCCTTTCTTGGGAACTCCATGGAAGGAGTTCACCTGAAATGAAATTCAATAAGCAACATTTTAAAAAGCCGATAAACTAACAATTTTCTCTCCCAGCATCTCGAGCTGACAATGCAGCTGGAACACTGTGGCCTTCTTTGATTCCATGATGTCTGGAAAAAGATTATAGTTATTAAA</canonical>
            <polymorphic>TGTGTTGCTGCAATTTTTGTTTCTCTACCGTTCACTCCATCAAATCTGAAAATTAAAACCTATGCTCAAGTGGCGAAAGTGATTAAAAGCCACCAACCTGGATCTTCATGACTTTTTTCCAGCACTCCCAAGCTTTTTCATGCGATGATCCACCATCCCATATTGCTATTCATATTGCCACCGACATCTTGAAAATCCATTTTTGCAGAAACTTCGCCTCTCTTTCTTTCAAAAATGTAACATAATCGCAAATTAGTCGGAAAATAAGTACACAGGGAATTCAACCCAAAGAATTGAAAATTAAGAAAAATGAAACCAGCTTTATCAAAAACTACTTTACTCGTACAAATAAAAAAAAAAGATCGAGTGAGTTTCAGTTAAAAATGGTAAATTTTGAGAGAGCGAAAGTGAAAGTTTAAAATTCTGAAATTATTTTGAAATTTTGAAATGTTCAAAAAATCTTGCGGATTTCCAAAAATTTAAAACCAGTGAAAAAGCARAATTTGACATGTATGACTTTTTTTTCAGATTATTAACCTTCAGCAATTTTCGAATTATCTAAATTGACAATTTTAAACTGAAAATTGAAACAATATTGAATTTCGCGATCACTTTACTGATTCTTCAAATAGTGGCTCCACTCGATGACCATTTTTTGCGCCTCCACAACATTCTCCTGAAAACGGAATTTACACAAATGAAATAACACGAATGAAAAATTGATTTTTACCTCGCAGAGGCCACAATGCACCATTTCTGCGACACTATCCAAGATCGCTTGTAGAATCCCATTTCTTTGGGATAGATCTTCGTAAGCCGGGTGGCCTTTCTTGGGAACTCCATGGAAGGAGTTCACCTGAAATGAAATTCAATAAGCAACATTTTAAAAAGCCGATAAACTAACAATTTTCTCTCCCAGCATCTCGAGCTGACAATGCAGCTGGAACACTGTGGCCTTCTTTGATTCCATGATGTCTGGAAAAAGATTATAGTTATTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>277 179 135 112 98 88 38 30 24 19</canonical_bands>
                <polymorphic_bands>277 179 135 122 112 88 38 30 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAAATTTTGAGAGAGCGAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GCCACTATTTGAAGAATCAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAAATTTTGAGAGAGCGAAAGTGAAAGTTTAAAATTCTGAAATTATTTTGAAATTTTGAAATGTTCAAAAAATCTTGCGGATTTCCAAAAATTTAAAACCAGTGAAAAAGCAGAATTTGACATGTATGACTTTTTTTTCAGATTATTAACCTTCAGCAATTTTCGAATTATCTAAATTGACAATTTTAAACTGAAAATTGAAACAATATTGAATTTCGCGATCACTTTACTGATTCTTCAAATAGTGGC</canonical_amplicon>
		<polymorphic_amplicon>GTAAATTTTGAGAGAGCGAAAGTGAAAGTTTAAAATTCTGAAATTATTTTGAAATTTTGAAATGTTCAAAAAATCTTGCGGATTTCCAAAAATTTAAAACCAGTGAAAAAGCARAATTTGACATGTATGACTTTTTTTTCAGATTATTAACCTTCAGCAATTTTCGAATTATCTAAATTGACAATTTTAAACTGAAAATTGAAACAATATTGAATTTCGCGATCACTTTACTGATTCTTCAAATAGTGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30134</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>150245</contig_pos>
        <strand>+</strand>
        <context>AAAAAGCARA[A/G]TTTGACATGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAAAAAATCTTGCGGATTTCCAAAAATTTAAAACCAGTGAAAAAGCAGA</left_flank>
        <right_flank>TTTGACATGTATGACTTTTTTTTCAGATTATTAACCTTCAGCAATTTTCG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTGCTGCAATTTTTGTTTCTCTACCGTTCACTCCATCAAATCTGAAAATTAAAACCTATGCTCAAGTGGCGAAAGTGATTAAAAGCCACCAACCTGGATCTTCATGACTTTTTTCCAGCACTCCCAAGCTTTTTCATGCGATGATCCACCATCCCATATTGCTATTCATATTGCCACCGACATCTTGAAAATCCATTTTTGCAGAAACTTCGCCTCTCTTTCTTTCAAAAATGTAACATAATCGCAAATTAGTCGGAAAATAAGTACACAGGGAATTCAACCCAAAGAATTGAAAATTAAGAAAAATGAAACCAGCTTTATCAAAAACTACTTTACTCGTACAAATAAAAAAAAAAGATCGAGTGAGTTTCAGTTAAAAATGGTAAATTTTGAGAGAGCGAAAGTGAAAGTTTAAAATTCTGAAATTATTTTGAAATTTTGAAATGTTCAAAAAATCTTGCGGATTTCCAAAAATTTAAAACCAGTGAAAAAGCAGAATTTGACATGTATGACTTTTTTTTCAGATTATTAACCTTCAGCAATTTTCGAATTATCTAAATTGACAATTTTAAACTGAAAATTGAAACAATATTGAATTTCGCGATCACTTTACTGATTCTTCAAATAGTGGCTCCACTCGATGACCATTTTTTGCGCCTCCACAACATTCTCCTGAAAACGGAATTTACACAAATGAAATAACACGAATGAAAAATTGATTTTTACCTCGCAGAGGCCACAATGCACCATTTCTGCGACACTATCCAAGATCGCTTGTAGAATCCCATTTCTTTGGGATAGATCTTCGTAAGCCGGGTGGCCTTTCTTGGGAACTCCATGGAAGGAGTTCACCTGAAATGAAATTCAATAAGCAACATTTTAAAAAGCCGATAAACTAACAATTTTCTCTCCCAGCATCTCGAGCTGACAATGCAGCTGGAACACTGTGGCCTTCTTTGATTCCATGATGTCTGGAAAAAGATTATAGTTATTAAAAG</canonical>
            <polymorphic>TGTTGCTGCAATTTTTGTTTCTCTACCGTTCACTCCATCAAATCTGAAAATTAAAACCTATGCTCAAGTGGCGAAAGTGATTAAAAGCCACCAACCTGGATCTTCATGACTTTTTTCCAGCACTCCCAAGCTTTTTCATGCGATGATCCACCATCCCATATTGCTATTCATATTGCCACCGACATCTTGAAAATCCATTTTTGCAGAAACTTCGCCTCTCTTTCTTTCAAAAATGTAACATAATCGCAAATTAGTCGGAAAATAAGTACACAGGGAATTCAACCCAAAGAATTGAAAATTAAGAAAAATGAAACCAGCTTTATCAAAAACTACTTTACTCGTACAAATAAAAAAAAAAGATCGAGTGAGTTTCAGTTAAAAATGGTAAATTTTGAGAGAGCGAAAGTGAAAGTTTAAAATTCTGAAATTATTTTGAAATTTTGAAATGTTCAAAAAATCTTGCGGATTTCCAAAAATTTAAAACCAGTGAAAAAGCAGARTTTGACATGTATGACTTTTTTTTCAGATTATTAACCTTCAGCAATTTTCGAATTATCTAAATTGACAATTTTAAACTGAAAATTGAAACAATATTGAATTTCGCGATCACTTTACTGATTCTTCAAATAGTGGCTCCACTCGATGACCATTTTTTGCGCCTCCACAACATTCTCCTGAAAACGGAATTTACACAAATGAAATAACACGAATGAAAAATTGATTTTTACCTCGCAGAGGCCACAATGCACCATTTCTGCGACACTATCCAAGATCGCTTGTAGAATCCCATTTCTTTGGGATAGATCTTCGTAAGCCGGGTGGCCTTTCTTGGGAACTCCATGGAAGGAGTTCACCTGAAATGAAATTCAATAAGCAACATTTTAAAAAGCCGATAAACTAACAATTTTCTCTCCCAGCATCTCGAGCTGACAATGCAGCTGGAACACTGTGGCCTTCTTTGATTCCATGATGTCTGGAAAAAGATTATAGTTATTAAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>275 179 137 112 98 88 38 30 24 19</canonical_bands>
                <polymorphic_bands>275 179 137 122 112 88 38 30 19</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>200 148 98 91 88 44 39 39 38 31 30 27 24 16 14 14 11 9 9 8 8 7 7</canonical_bands>
                <polymorphic_bands>200 148 98 91 88 68 39 39 38 31 30 27 16 14 14 11 9 9 8 8 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAAATTTTGAGAGAGCGAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GCCACTATTTGAAGAATCAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAAATTTTGAGAGAGCGAAAGTGAAAGTTTAAAATTCTGAAATTATTTTGAAATTTTGAAATGTTCAAAAAATCTTGCGGATTTCCAAAAATTTAAAACCAGTGAAAAAGCAGAATTTGACATGTATGACTTTTTTTTCAGATTATTAACCTTCAGCAATTTTCGAATTATCTAAATTGACAATTTTAAACTGAAAATTGAAACAATATTGAATTTCGCGATCACTTTACTGATTCTTCAAATAGTGGC</canonical_amplicon>
		<polymorphic_amplicon>GTAAATTTTGAGAGAGCGAAAGTGAAAGTTTAAAATTCTGAAATTATTTTGAAATTTTGAAATGTTCAAAAAATCTTGCGGATTTCCAAAAATTTAAAACCAGTGAAAAAGCAGARTTTGACATGTATGACTTTTTTTTCAGATTATTAACCTTCAGCAATTTTCGAATTATCTAAATTGACAATTTTAAACTGAAAATTGAAACAATATTGAATTTCGCGATCACTTTACTGATTCTTCAAATAGTGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30135</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>158918</contig_pos>
        <strand>+</strand>
        <context>AAAGTGGAAG[A/T]AAAKAGAACA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCATGGGAGCCTTACACAGATTATTGGAAGAAAAAAATGGAAAGTGGAAG</left_flank>
        <right_flank>AAATAGAACACTACTTTCCAACATTTATTCCTCTTGAAAACTAGAAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTATCCAAATTGAGCAGGATTCCTCCAGCAGTAAGTGGGACAGCATTATGTTTGGGAGGCAGTTAAGGGCTTGGGGGATTATATTTTTACTACATACATCCCTAGTGAAATGATCACTCTCTTGGCAAATTCTAAAATCTTACACAGAAGAGAATCGAAAAATAGTCAATGTTATCAACAGGTGATTATTATTGGATACATGACAGTACATACCAAAGAATAAGCTTCAGATTATGTTGTAGATATCGGAAGCTCACTCTCAAACACTTTTTCCACCATCAAACGCTGGCTACTTCCGGCAAATGCAGAAAAAAAAGATGGGCGCCACCACCTAGTCTCTTTGTTTGCTTTACCGAAAAGGAGCTATTTTTGAAACTAATAGAAAAGATGGCAGATGGTGTCCCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATGCCATGGGAGCCTTACACAGATTATTGGAAGAAAAAAATGGAAAGTGGAAGTAAATAGAACACTACTTTCCAACATTTATTCCTCTTGAAAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAAAAGCCCACAGAAACCCCATTTGTCTACTTGTGAATTCAAGACTTTCCTTGCGATATCCCCTACTAACTACTCAAAATTTCAAGAAAACGTACCTCGGATTTTGCTCTCTGGGTTCACAAAATTTCATGATCAGCACAAGCAACCGGTTCGTTGGTCAGACTCATGTTCCAGCTTAAACCTCCTTTGTCTTTCCTCATGATTGGACCTGCGAATCGTTACATAAAAAGCGTTGCATTGACGAATGAATTGATCTGAAAAATGTTGTGGTTAGGAATAAATACCAAAATATTCAACCAGACGGGAAGCAACTGAGAGAGGTAGCCAGAAAGGCGTGCAGAGAGGTGAAAGAACACTAAGCAATGGTCTATCGCTGTTCAGAAAA</canonical>
            <polymorphic>AGTATCCAAATTGAGCAGGATTCCTCCAGCAGTAAGTGGGACAGCATTATGTTTGGGAGGCAGTTAAGGGCTTGGGGGATTATATTTTTACTACATACATCCCTAGTGAAATGATCACTCTCTTGGCAAATTCTAAAATCTTACACAGAAGAGAATCGAAAAATAGTCAATGTTATCAACAGGTGATTATTATTGGATACATGACAGTACATACCAAAGAATAAGCTTCAGATTATGTTGTAGATATCGGAAGCTCACTCTCAAACACTTTTTCCACCATCAAACGCTGGCTACTTCCGGCAAATGCAGAAAAAAAAGATGGGCGCCACCACCTAGTCTCTTTGTTTGCTTTACCGAAAAGGAGCTATTTTTGAAACTAATAGAAAAGATGGCAGATGGTGTCCCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATGCCATGGGAGCCTTACACAGATTATTGGAAGAAAAAAATGGAAAGTGGAAGWAAATAGAACACTACTTTCCAACATTTATTCCTCTTGAAAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAAAAGCCCACAGAAACCCCATTTGTCTACTTGTGAATTCAAGACTTTCCTTGCGATATCCCCTACTAACTACTCAAAATTTCAAGAAAACGTACCTCGGATTTTGCTCTCTGGGTTCACAAAATTTCATGATCAGCACAAGCAACCGGTTCGTTGGTCAGACTCATGTTCCAGCTTAAACCTCCTTTGTCTTTCCTCATGATTGGACCTGCGAATCGTTACATAAAAAGCGTTGCATTGACGAATGAATTGATCTGAAAAATGTTGTGGTTAGGAATAAATACCAAAATATTCAACCAGACGGGAAGCAACTGAGAGAGGTAGCCAGAAAGGCGTGCAGAGAGGTGAAAGAACACTAAGCAATGGTCTATCGCTGTTCAGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTACAAGTGTCCCCAATAAATA</pcr_primer_p1>
		<pcr_primer_p2>TTGAATTCACAAGTAGACAAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATGCCATGGGAGCCTTACACAGATTATTGGAAGAAAAAAATGGAAAGTGGAAGTAAATAGAACACTACTTTCCAACATTTATTCCTCTTGAAAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAAAAGCCCACAGAAACCCCATTTGTCTACTTGTGAATTCAA</canonical_amplicon>
		<polymorphic_amplicon>TGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATGCCATGGGAGCCTTACACAGATTATTGGAAGAAAAAAATGGAAAGTGGAAGWAAATAGAACACTACTTTCCAACATTTATTCCTCTTGAAAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAAAAGCCCACAGAAACCCCATTTGTCTACTTGTGAATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30136</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>158922</contig_pos>
        <strand>+</strand>
        <context>TGGAAGWAAA[G/T]AGAACACTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGGAGCCTTACACAGATTATTGGAAGAAAAAAATGGAAAGTGGAAGTAAA</left_flank>
        <right_flank>AGAACACTACTTTCCAACATTTATTCCTCTTGAAAACTAGAAAAATCAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAAATTGAGCAGGATTCCTCCAGCAGTAAGTGGGACAGCATTATGTTTGGGAGGCAGTTAAGGGCTTGGGGGATTATATTTTTACTACATACATCCCTAGTGAAATGATCACTCTCTTGGCAAATTCTAAAATCTTACACAGAAGAGAATCGAAAAATAGTCAATGTTATCAACAGGTGATTATTATTGGATACATGACAGTACATACCAAAGAATAAGCTTCAGATTATGTTGTAGATATCGGAAGCTCACTCTCAAACACTTTTTCCACCATCAAACGCTGGCTACTTCCGGCAAATGCAGAAAAAAAAGATGGGCGCCACCACCTAGTCTCTTTGTTTGCTTTACCGAAAAGGAGCTATTTTTGAAACTAATAGAAAAGATGGCAGATGGTGTCCCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATGCCATGGGAGCCTTACACAGATTATTGGAAGAAAAAAATGGAAAGTGGAAGTAAATAGAACACTACTTTCCAACATTTATTCCTCTTGAAAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAAAAGCCCACAGAAACCCCATTTGTCTACTTGTGAATTCAAGACTTTCCTTGCGATATCCCCTACTAACTACTCAAAATTTCAAGAAAACGTACCTCGGATTTTGCTCTCTGGGTTCACAAAATTTCATGATCAGCACAAGCAACCGGTTCGTTGGTCAGACTCATGTTCCAGCTTAAACCTCCTTTGTCTTTCCTCATGATTGGACCTGCGAATCGTTACATAAAAAGCGTTGCATTGACGAATGAATTGATCTGAAAAATGTTGTGGTTAGGAATAAATACCAAAATATTCAACCAGACGGGAAGCAACTGAGAGAGGTAGCCAGAAAGGCGTGCAGAGAGGTGAAAGAACACTAAGCAATGGTCTATCGCTGTTCAGAAAATATG</canonical>
            <polymorphic>TCCAAATTGAGCAGGATTCCTCCAGCAGTAAGTGGGACAGCATTATGTTTGGGAGGCAGTTAAGGGCTTGGGGGATTATATTTTTACTACATACATCCCTAGTGAAATGATCACTCTCTTGGCAAATTCTAAAATCTTACACAGAAGAGAATCGAAAAATAGTCAATGTTATCAACAGGTGATTATTATTGGATACATGACAGTACATACCAAAGAATAAGCTTCAGATTATGTTGTAGATATCGGAAGCTCACTCTCAAACACTTTTTCCACCATCAAACGCTGGCTACTTCCGGCAAATGCAGAAAAAAAAGATGGGCGCCACCACCTAGTCTCTTTGTTTGCTTTACCGAAAAGGAGCTATTTTTGAAACTAATAGAAAAGATGGCAGATGGTGTCCCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATGCCATGGGAGCCTTACACAGATTATTGGAAGAAAAAAATGGAAAGTGGAAGTAAAKAGAACACTACTTTCCAACATTTATTCCTCTTGAAAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAAAAGCCCACAGAAACCCCATTTGTCTACTTGTGAATTCAAGACTTTCCTTGCGATATCCCCTACTAACTACTCAAAATTTCAAGAAAACGTACCTCGGATTTTGCTCTCTGGGTTCACAAAATTTCATGATCAGCACAAGCAACCGGTTCGTTGGTCAGACTCATGTTCCAGCTTAAACCTCCTTTGTCTTTCCTCATGATTGGACCTGCGAATCGTTACATAAAAAGCGTTGCATTGACGAATGAATTGATCTGAAAAATGTTGTGGTTAGGAATAAATACCAAAATATTCAACCAGACGGGAAGCAACTGAGAGAGGTAGCCAGAAAGGCGTGCAGAGAGGTGAAAGAACACTAAGCAATGGTCTATCGCTGTTCAGAAAATATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTACAAGTGTCCCCAATAAATA</pcr_primer_p1>
		<pcr_primer_p2>TTGAATTCACAAGTAGACAAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATGCCATGGGAGCCTTACACAGATTATTGGAAGAAAAAAATGGAAAGTGGAAGTAAATAGAACACTACTTTCCAACATTTATTCCTCTTGAAAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAAAAGCCCACAGAAACCCCATTTGTCTACTTGTGAATTCAA</canonical_amplicon>
		<polymorphic_amplicon>TGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATGCCATGGGAGCCTTACACAGATTATTGGAAGAAAAAAATGGAAAGTGGAAGTAAAKAGAACACTACTTTCCAACATTTATTCCTCTTGAAAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAAAAGCCCACAGAAACCCCATTTGTCTACTTGTGAATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30137</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>158943</contig_pos>
        <strand>+</strand>
        <context>TTTCCAACAT[G/T]TATTCCTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGAAGAAAAAAATGGAAAGTGGAAGTAAATAGAACACTACTTTCCAACAT</left_flank>
        <right_flank>TATTCCTCTTGAAAACTAGAAAAATCAGACTTATGTATATACAGCCCTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGCAGTAAGTGGGACAGCATTATGTTTGGGAGGCAGTTAAGGGCTTGGGGGATTATATTTTTACTACATACATCCCTAGTGAAATGATCACTCTCTTGGCAAATTCTAAAATCTTACACAGAAGAGAATCGAAAAATAGTCAATGTTATCAACAGGTGATTATTATTGGATACATGACAGTACATACCAAAGAATAAGCTTCAGATTATGTTGTAGATATCGGAAGCTCACTCTCAAACACTTTTTCCACCATCAAACGCTGGCTACTTCCGGCAAATGCAGAAAAAAAAGATGGGCGCCACCACCTAGTCTCTTTGTTTGCTTTACCGAAAAGGAGCTATTTTTGAAACTAATAGAAAAGATGGCAGATGGTGTCCCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATGCCATGGGAGCCTTACACAGATTATTGGAAGAAAAAAATGGAAAGTGGAAGTAAATAGAACACTACTTTCCAACATTTATTCCTCTTGAAAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAAAAGCCCACAGAAACCCCATTTGTCTACTTGTGAATTCAAGACTTTCCTTGCGATATCCCCTACTAACTACTCAAAATTTCAAGAAAACGTACCTCGGATTTTGCTCTCTGGGTTCACAAAATTTCATGATCAGCACAAGCAACCGGTTCGTTGGTCAGACTCATGTTCCAGCTTAAACCTCCTTTGTCTTTCCTCATGATTGGACCTGCGAATCGTTACATAAAAAGCGTTGCATTGACGAATGAATTGATCTGAAAAATGTTGTGGTTAGGAATAAATACCAAAATATTCAACCAGACGGGAAGCAACTGAGAGAGGTAGCCAGAAAGGCGTGCAGAGAGGTGAAAGAACACTAAGCAATGGTCTATCGCTGTTCAGAAAATATGTATGAGAAATGGCGATAAAAG</canonical>
            <polymorphic>CCAGCAGTAAGTGGGACAGCATTATGTTTGGGAGGCAGTTAAGGGCTTGGGGGATTATATTTTTACTACATACATCCCTAGTGAAATGATCACTCTCTTGGCAAATTCTAAAATCTTACACAGAAGAGAATCGAAAAATAGTCAATGTTATCAACAGGTGATTATTATTGGATACATGACAGTACATACCAAAGAATAAGCTTCAGATTATGTTGTAGATATCGGAAGCTCACTCTCAAACACTTTTTCCACCATCAAACGCTGGCTACTTCCGGCAAATGCAGAAAAAAAAGATGGGCGCCACCACCTAGTCTCTTTGTTTGCTTTACCGAAAAGGAGCTATTTTTGAAACTAATAGAAAAGATGGCAGATGGTGTCCCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATGCCATGGGAGCCTTACACAGATTATTGGAAGAAAAAAATGGAAAGTGGAAGTAAATAGAACACTACTTTCCAACATKTATTCCTCTTGAAAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAAAAGCCCACAGAAACCCCATTTGTCTACTTGTGAATTCAAGACTTTCCTTGCGATATCCCCTACTAACTACTCAAAATTTCAAGAAAACGTACCTCGGATTTTGCTCTCTGGGTTCACAAAATTTCATGATCAGCACAAGCAACCGGTTCGTTGGTCAGACTCATGTTCCAGCTTAAACCTCCTTTGTCTTTCCTCATGATTGGACCTGCGAATCGTTACATAAAAAGCGTTGCATTGACGAATGAATTGATCTGAAAAATGTTGTGGTTAGGAATAAATACCAAAATATTCAACCAGACGGGAAGCAACTGAGAGAGGTAGCCAGAAAGGCGTGCAGAGAGGTGAAAGAACACTAAGCAATGGTCTATCGCTGTTCAGAAAATATGTATGAGAAATGGCGATAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTACAAGTGTCCCCAATAAATA</pcr_primer_p1>
		<pcr_primer_p2>TTGAATTCACAAGTAGACAAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATGCCATGGGAGCCTTACACAGATTATTGGAAGAAAAAAATGGAAAGTGGAAGTAAATAGAACACTACTTTCCAACATTTATTCCTCTTGAAAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAAAAGCCCACAGAAACCCCATTTGTCTACTTGTGAATTCAA</canonical_amplicon>
		<polymorphic_amplicon>TGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATGCCATGGGAGCCTTACACAGATTATTGGAAGAAAAAAATGGAAAGTGGAAGTAAATAGAACACTACTTTCCAACATKTATTCCTCTTGAAAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAAAAGCCCACAGAAACCCCATTTGTCTACTTGTGAATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30138</snp_id>
        <super_contig>c005100849.Contig2</super_contig>
        <contig_pos>158954</contig_pos>
        <strand>+</strand>
        <context>TATTCCTCTT[C/G]AAAACTAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATGGAAAGTGGAAGTAAATAGAACACTACTTTCCAACATTTATTCCTCTT</left_flank>
        <right_flank>AAAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGGACAGCATTATGTTTGGGAGGCAGTTAAGGGCTTGGGGGATTATATTTTTACTACATACATCCCTAGTGAAATGATCACTCTCTTGGCAAATTCTAAAATCTTACACAGAAGAGAATCGAAAAATAGTCAATGTTATCAACAGGTGATTATTATTGGATACATGACAGTACATACCAAAGAATAAGCTTCAGATTATGTTGTAGATATCGGAAGCTCACTCTCAAACACTTTTTCCACCATCAAACGCTGGCTACTTCCGGCAAATGCAGAAAAAAAAGATGGGCGCCACCACCTAGTCTCTTTGTTTGCTTTACCGAAAAGGAGCTATTTTTGAAACTAATAGAAAAGATGGCAGATGGTGTCCCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATGCCATGGGAGCCTTACACAGATTATTGGAAGAAAAAAATGGAAAGTGGAAGTAAATAGAACACTACTTTCCAACATTTATTCCTCTTGAAAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAAAAGCCCACAGAAACCCCATTTGTCTACTTGTGAATTCAAGACTTTCCTTGCGATATCCCCTACTAACTACTCAAAATTTCAAGAAAACGTACCTCGGATTTTGCTCTCTGGGTTCACAAAATTTCATGATCAGCACAAGCAACCGGTTCGTTGGTCAGACTCATGTTCCAGCTTAAACCTCCTTTGTCTTTCCTCATGATTGGACCTGCGAATCGTTACATAAAAAGCGTTGCATTGACGAATGAATTGATCTGAAAAATGTTGTGGTTAGGAATAAATACCAAAATATTCAACCAGACGGGAAGCAACTGAGAGAGGTAGCCAGAAAGGCGTGCAGAGAGGTGAAAGAACACTAAGCAATGGTCTATCGCTGTTCAGAAAATATGTATGAGAAATGGCGATAAAAGACAGAGAGGGA</canonical>
            <polymorphic>TGGGACAGCATTATGTTTGGGAGGCAGTTAAGGGCTTGGGGGATTATATTTTTACTACATACATCCCTAGTGAAATGATCACTCTCTTGGCAAATTCTAAAATCTTACACAGAAGAGAATCGAAAAATAGTCAATGTTATCAACAGGTGATTATTATTGGATACATGACAGTACATACCAAAGAATAAGCTTCAGATTATGTTGTAGATATCGGAAGCTCACTCTCAAACACTTTTTCCACCATCAAACGCTGGCTACTTCCGGCAAATGCAGAAAAAAAAGATGGGCGCCACCACCTAGTCTCTTTGTTTGCTTTACCGAAAAGGAGCTATTTTTGAAACTAATAGAAAAGATGGCAGATGGTGTCCCACTGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATGCCATGGGAGCCTTACACAGATTATTGGAAGAAAAAAATGGAAAGTGGAAGTAAATAGAACACTACTTTCCAACATTTATTCCTCTTSAAAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAAAAGCCCACAGAAACCCCATTTGTCTACTTGTGAATTCAAGACTTTCCTTGCGATATCCCCTACTAACTACTCAAAATTTCAAGAAAACGTACCTCGGATTTTGCTCTCTGGGTTCACAAAATTTCATGATCAGCACAAGCAACCGGTTCGTTGGTCAGACTCATGTTCCAGCTTAAACCTCCTTTGTCTTTCCTCATGATTGGACCTGCGAATCGTTACATAAAAAGCGTTGCATTGACGAATGAATTGATCTGAAAAATGTTGTGGTTAGGAATAAATACCAAAATATTCAACCAGACGGGAAGCAACTGAGAGAGGTAGCCAGAAAGGCGTGCAGAGAGGTGAAAGAACACTAAGCAATGGTCTATCGCTGTTCAGAAAATATGTATGAGAAATGGCGATAAAAGACAGAGAGGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>497 223 72 70 50 45 43</canonical_bands>
                <polymorphic_bands>569 223 70 50 45 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTACAAGTGTCCCCAATAAATA</pcr_primer_p1>
		<pcr_primer_p2>TTGAATTCACAAGTAGACAAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATGCCATGGGAGCCTTACACAGATTATTGGAAGAAAAAAATGGAAAGTGGAAGTAAATAGAACACTACTTTCCAACATTTATTCCTCTTGAAAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAAAAGCCCACAGAAACCCCATTTGTCTACTTGTGAATTCAA</canonical_amplicon>
		<polymorphic_amplicon>TGTACAAGTGTCCCCAATAAATATTCATTTTATATCAAAATGCCATGGGAGCCTTACACAGATTATTGGAAGAAAAAAATGGAAAGTGGAAGTAAATAGAACACTACTTTCCAACATTTATTCCTCTTSAAAACTAGAAAAATCAGACTTATGTATATACAGCCCTGTTTTTGTAGTACTTCATGTATCTTAGAATTCCAGAAGTAATGAAAAGCCCACAGAAACCCCATTTGTCTACTTGTGAATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30139</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9294</contig_pos>
        <strand>+</strand>
        <context>CTCTTCCTCG[A/G]CAATTATGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCG</left_flank>
        <right_flank>CAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGTTCATACAAATATTTCGCCACAAAATACTTCATCGTCTCTCCATCCAATTCATCCAAATTCATTTTTTTCAAAAATTCCCAAATTACTTTTTTCGATTTTTCATTTTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCG</canonical>
            <polymorphic>GAGTTCATACAAATATTTCGCCACAAAATACTTCATCGTCTCTCCATCCAATTCATCCAAATTCATTTTTTTCAAAAATTCCCAAATTACTTTTTTCGATTTTTCATTTTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGRCAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>280 168 157 115 97 75 34 31 29 14</canonical_bands>
                <polymorphic_bands>448 157 115 97 75 34 31 29 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTGAAAATTTTGTTTGCAGT</pcr_primer_p1>
		<pcr_primer_p2>ATGAATTATTTGATCCTGACAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGRCAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30140</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9322</contig_pos>
        <strand>+</strand>
        <context>TCATACTCAA[A/C]YCGAATCCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAA</left_flank>
        <right_flank>CCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTTCATCGTCTCTCCATCCAATTCATCCAAATTCATTTTTTTCAAAAATTCCCAAATTACTTTTTTCGATTTTTCATTTTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTC</canonical>
            <polymorphic>TACTTCATCGTCTCTCCATCCAATTCATCCAAATTCATTTTTTTCAAAAATTCCCAAATTACTTTTTTCGATTTTTCATTTTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAAMCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTGAAAATTTTGTTTGCAGT</pcr_primer_p1>
		<pcr_primer_p2>ATGAATTATTTGATCCTGACAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAAMCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30141</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9323</contig_pos>
        <strand>+</strand>
        <context>CATACTCAAM[C/T]CGAATCCCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAAC</left_flank>
        <right_flank>CGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTCATCGTCTCTCCATCCAATTCATCCAAATTCATTTTTTTCAAAAATTCCCAAATTACTTTTTTCGATTTTTCATTTTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCA</canonical>
            <polymorphic>ACTTCATCGTCTCTCCATCCAATTCATCCAAATTCATTTTTTTCAAAAATTCCCAAATTACTTTTTTCGATTTTTCATTTTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACYCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTGAAAATTTTGTTTGCAGT</pcr_primer_p1>
		<pcr_primer_p2>ATGAATTATTTGATCCTGACAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACYCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30142</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9337</contig_pos>
        <strand>+</strand>
        <context>ATCCCATGTT[C/T]YTTTTCYTKY</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTT</left_flank>
        <right_flank>CTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATCCAATTCATCCAAATTCATTTTTTTCAAAAATTCCCAAATTACTTTTTTCGATTTTTCATTTTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCT</canonical>
            <polymorphic>CCATCCAATTCATCCAAATTCATTTTTTTCAAAAATTCCCAAATTACTTTTTTCGATTTTTCATTTTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTYCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTGAAAATTTTGTTTGCAGT</pcr_primer_p1>
		<pcr_primer_p2>ATGAATTATTTGATCCTGACAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTYCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30143</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9338</contig_pos>
        <strand>+</strand>
        <context>TCCCATGTTY[C/T]TTTTCYTKYC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTC</left_flank>
        <right_flank>TTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCCAATTCATCCAAATTCATTTTTTTCAAAAATTCCCAAATTACTTTTTTCGATTTTTCATTTTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTC</canonical>
            <polymorphic>CATCCAATTCATCCAAATTCATTTTTTTCAAAAATTCCCAAATTACTTTTTTCGATTTTTCATTTTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCYTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTGAAAATTTTGTTTGCAGT</pcr_primer_p1>
		<pcr_primer_p2>ATGAATTATTTGATCCTGACAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCYTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30144</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9344</contig_pos>
        <strand>+</strand>
        <context>GTTYYTTTTC[C/T]TKYCCWTTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTC</left_flank>
        <right_flank>TTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCATCCAAATTCATTTTTTTCAAAAATTCCCAAATTACTTTTTTCGATTTTTCATTTTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATA</canonical>
            <polymorphic>ATTCATCCAAATTCATTTTTTTCAAAAATTCCCAAATTACTTTTTTCGATTTTTCATTTTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCYTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTGAAAATTTTGTTTGCAGT</pcr_primer_p1>
		<pcr_primer_p2>ATGAATTATTTGATCCTGACAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCYTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30145</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9346</contig_pos>
        <strand>+</strand>
        <context>TYYTTTTCYT[G/T]YCCWTTAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTT</left_flank>
        <right_flank>CCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATCCAAATTCATTTTTTTCAAAAATTCCCAAATTACTTTTTTCGATTTTTCATTTTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAAC</canonical>
            <polymorphic>TCATCCAAATTCATTTTTTTCAAAAATTCCCAAATTACTTTTTTCGATTTTTCATTTTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTKCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTGAAAATTTTGTTTGCAGT</pcr_primer_p1>
		<pcr_primer_p2>ATGAATTATTTGATCCTGACAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTKCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30146</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9347</contig_pos>
        <strand>+</strand>
        <context>YYTTTTCYTK[C/T]CCWTTAAAAW</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTT</left_flank>
        <right_flank>CCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCCAAATTCATTTTTTTCAAAAATTCCCAAATTACTTTTTTCGATTTTTCATTTTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACA</canonical>
            <polymorphic>CATCCAAATTCATTTTTTTCAAAAATTCCCAAATTACTTTTTTCGATTTTTCATTTTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTYCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTGAAAATTTTGTTTGCAGT</pcr_primer_p1>
		<pcr_primer_p2>ATGAATTATTTGATCCTGACAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTYCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30147</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9350</contig_pos>
        <strand>+</strand>
        <context>TTTCYTKYCC[A/T]TTAAAAWRKR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCC</left_flank>
        <right_flank>TTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAATTCATTTTTTTCAAAAATTCCCAAATTACTTTTTTCGATTTTTCATTTTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAA</canonical>
            <polymorphic>CCAAATTCATTTTTTTCAAAAATTCCCAAATTACTTTTTTCGATTTTTCATTTTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCWTTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTGAAAATTTTGTTTGCAGT</pcr_primer_p1>
		<pcr_primer_p2>ATGAATTATTTGATCCTGACAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCWTTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30148</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9357</contig_pos>
        <strand>+</strand>
        <context>YCCWTTAAAA[A/T]RKRAATCCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAA</left_flank>
        <right_flank>ATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTTTTTCAAAAATTCCCAAATTACTTTTTTCGATTTTTCATTTTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTA</canonical>
            <polymorphic>CATTTTTTTCAAAAATTCCCAAATTACTTTTTTCGATTTTTCATTTTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAWATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTGAAAATTTTGTTTGCAGT</pcr_primer_p1>
		<pcr_primer_p2>ATGAATTATTTGATCCTGACAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAWATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30149</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9358</contig_pos>
        <strand>+</strand>
        <context>CCWTTAAAAW[A/G]KRAATCCGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAA</left_flank>
        <right_flank>TGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTTCAAAAATTCCCAAATTACTTTTTTCGATTTTTCATTTTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTAT</canonical>
            <polymorphic>ATTTTTTTCAAAAATTCCCAAATTACTTTTTTCGATTTTTCATTTTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAARTGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTGAAAATTTTGTTTGCAGT</pcr_primer_p1>
		<pcr_primer_p2>ATGAATTATTTGATCCTGACAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAARTGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30150</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9359</contig_pos>
        <strand>+</strand>
        <context>CWTTAAAAWR[G/T]RAATCCGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAA</left_flank>
        <right_flank>GAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTCAAAAATTCCCAAATTACTTTTTTCGATTTTTCATTTTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATA</canonical>
            <polymorphic>TTTTTTTCAAAAATTCCCAAATTACTTTTTTCGATTTTTCATTTTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAAKGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTGAAAATTTTGTTTGCAGT</pcr_primer_p1>
		<pcr_primer_p2>ATGAATTATTTGATCCTGACAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAAKGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30151</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9360</contig_pos>
        <strand>+</strand>
        <context>WTTAAAAWRK[A/G]AATCCGAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAAT</left_flank>
        <right_flank>AATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTCAAAAATTCCCAAATTACTTTTTTCGATTTTTCATTTTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAA</canonical>
            <polymorphic>TTTTTTCAAAAATTCCCAAATTACTTTTTTCGATTTTTCATTTTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATRAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>202 164 126 106 95 81 74 56 35 24 23 14</canonical_bands>
                <polymorphic_bands>202 164 126 106 95 81 74 56 49 24 23</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>357 164 126 106 95 56 35 24 23 14</canonical_bands>
                <polymorphic_bands>357 164 126 106 95 56 49 24 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTGAAAATTTTGTTTGCAGT</pcr_primer_p1>
		<pcr_primer_p2>ATGAATTATTTGATCCTGACAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATRAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30152</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9373</contig_pos>
        <strand>+</strand>
        <context>TCCGAAAAGT[G/T]GAATCTCCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGT</left_flank>
        <right_flank>GAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCCAAATTACTTTTTTCGATTTTTCATTTTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAA</canonical>
            <polymorphic>TCCCAAATTACTTTTTTCGATTTTTCATTTTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTKGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>497 411 92</canonical_bands>
                <polymorphic_bands>589 411</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>267 138 133 121 99 91 41 28 26 26 13 11 4 2</canonical_bands>
                <polymorphic_bands>267 229 133 121 99 41 28 26 26 13 11 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTGAAAATTTTGTTTGCAGT</pcr_primer_p1>
		<pcr_primer_p2>ATGAATTATTTGATCCTGACAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTKGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30153</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9388</contig_pos>
        <strand>+</strand>
        <context>CTCCAAATTC[C/T]ATTYTTCTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTC</left_flank>
        <right_flank>ATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGATTTTTCATTTTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATT</canonical>
            <polymorphic>TTCGATTTTTCATTTTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCYATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTGAAAATTTTGTTTGCAGT</pcr_primer_p1>
		<pcr_primer_p2>ATGAATTATTTGATCCTGACAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCYATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30154</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9392</contig_pos>
        <strand>+</strand>
        <context>AAATTCYATT[C/T]TTCTGAATCY</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATT</left_flank>
        <right_flank>TTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTCATTTTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATA</canonical>
            <polymorphic>ATTTTTCATTTTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTYTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTGAAAATTTTGTTTGCAGT</pcr_primer_p1>
		<pcr_primer_p2>ATGAATTATTTGATCCTGACAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTYTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30155</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9402</contig_pos>
        <strand>+</strand>
        <context>YTTCTGAATC[C/T]CATCAATTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATC</left_flank>
        <right_flank>CATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCA</canonical>
            <polymorphic>TTCGAGTAAATATCCCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCYCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTGAAAATTTTGTTTGCAGT</pcr_primer_p1>
		<pcr_primer_p2>ATGAATTATTTGATCCTGACAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCYCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30156</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9416</contig_pos>
        <strand>+</strand>
        <context>CAATTTGAAT[A/T]CCRTATAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAAT</left_flank>
        <right_flank>CCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCA</canonical>
            <polymorphic>CCAAATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATWCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>122 120 117 95 91 66 65 57 43 40 31 30 22 19 16 16 13 12 11 7 7</canonical_bands>
                <polymorphic_bands>122 120 117 95 91 66 65 57 43 42 40 31 22 19 16 16 13 11 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>285 258 238 122 97</canonical_bands>
                <polymorphic_bands>523 258 122 97</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>87 59 56 55 53 50 41 40 39 37 35 32 29 25 25 25 24 22 21 20 19 19 17 16 16 15 13 12 12 11 11 9 9 9 7 7 7 6 6 4</canonical_bands>
                <polymorphic_bands>87 59 56 55 53 50 41 40 39 37 35 32 29 25 25 25 24 22 21 20 19 19 18 17 16 16 15 13 12 11 11 9 9 9 7 7 7 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTGAAAATTTTGTTTGCAGT</pcr_primer_p1>
		<pcr_primer_p2>ATGAATTATTTGATCCTGACAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATWCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30157</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9419</contig_pos>
        <strand>+</strand>
        <context>TTTGAATWCC[A/G]TATAAAATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCC</left_flank>
        <right_flank>TATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTT</canonical>
            <polymorphic>AATAGCGTCTCATTCGATATTTTAAAACCATTTCAATTGGAATTTGTTGACCACGTGGGAATTGTTGAATCAATTTCTGTTCACAATATCGAATCACATTGAATAGTTTCAGGTTATAGGCAATTGGAAGGATTTCTGATATTTTGGAATCTGAAAAATGAATTTTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCRTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTGAAAATTTTGTTTGCAGT</pcr_primer_p1>
		<pcr_primer_p2>ATGAATTATTTGATCCTGACAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCRTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30158</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9583</contig_pos>
        <strand>+</strand>
        <context>GAATTTTCAA[A/C]CAAAACRRAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAA</left_flank>
        <right_flank>CAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATC</canonical>
            <polymorphic>TTTTGAAAATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAAMCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTCCAGTAATCCTGTGTC</pcr_primer_p1>
		<pcr_primer_p2>TTAAAATCAACTTTTAGAAAACTCC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAAMCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30159</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9590</contig_pos>
        <strand>+</strand>
        <context>CAAMCAAAAC[A/G]RAACAAYTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAAC</left_flank>
        <right_flank>GAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCT</canonical>
            <polymorphic>AATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACRGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTCCAGTAATCCTGTGTC</pcr_primer_p1>
		<pcr_primer_p2>TTAAAATCAACTTTTAGAAAACTCC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACRGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30160</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9591</contig_pos>
        <strand>+</strand>
        <context>AAMCAAAACR[A/G]AACAAYTGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACG</left_flank>
        <right_flank>AACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTT</canonical>
            <polymorphic>ATTAATTGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGRAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTCCAGTAATCCTGTGTC</pcr_primer_p1>
		<pcr_primer_p2>TTAAAATCAACTTTTAGAAAACTCC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGRAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30161</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9597</contig_pos>
        <strand>+</strand>
        <context>AACRRAACAA[C/T]TGAGTCGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAA</left_flank>
        <right_flank>TGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGC</canonical>
            <polymorphic>TGTTTTGCGTTTATCAACCGTCAATTCGAACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAAYTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>497 486 17</canonical_bands>
                <polymorphic_bands>514 486</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>87 70 59 56 55 53 48 41 40 38 35 30 29 25 25 24 22 22 21 20 19 17 16 16 15 13 12 11 10 9 9 9 9 8 7 7 7 6</canonical_bands>
                <polymorphic_bands>87 70 59 56 55 53 48 41 40 38 38 35 30 29 25 25 24 22 22 20 19 16 16 15 13 12 11 10 9 9 9 9 8 7 7 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTTCCAGTAATCCTGTGTC</pcr_primer_p1>
		<pcr_primer_p2>TTAAAATCAACTTTTAGAAAACTCC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAAYTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30162</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9626</contig_pos>
        <strand>+</strand>
        <context>GCTCATCGTT[C/T]TCCGWAATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTT</left_flank>
        <right_flank>TCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTG</canonical>
            <polymorphic>ACTCCATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTYTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTCCAGTAATCCTGTGTC</pcr_primer_p1>
		<pcr_primer_p2>TTAAAATCAACTTTTAGAAAACTCC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTYTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30163</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9631</contig_pos>
        <strand>+</strand>
        <context>TCGTTYTCCG[A/T]AATTTYGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCG</left_flank>
        <right_flank>AATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTC</canonical>
            <polymorphic>ATGTGCACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGWAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTCCAGTAATCCTGTGTC</pcr_primer_p1>
		<pcr_primer_p2>TTAAAATCAACTTTTAGAAAACTCC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGWAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30164</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9637</contig_pos>
        <strand>+</strand>
        <context>TCCGWAATTT[C/T]GATTTTTGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTT</left_flank>
        <right_flank>GATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAA</canonical>
            <polymorphic>ACATTGCATACACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTYGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>280 194 156 155 150 34 31</canonical_bands>
                <polymorphic_bands>280 194 190 155 150 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTTCCAGTAATCCTGTGTC</pcr_primer_p1>
		<pcr_primer_p2>TTAAAATCAACTTTTAGAAAACTCC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTYGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30165</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9648</contig_pos>
        <strand>+</strand>
        <context>GATTTTTGGA[C/G]AGATATTGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGA</left_flank>
        <right_flank>AGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAA</canonical>
            <polymorphic>ACTCTTCTAGAAGTTTGAAATCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGASAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTCCAGTAATCCTGTGTC</pcr_primer_p1>
		<pcr_primer_p2>TTAAAATCAACTTTTAGAAAACTCC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGASAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30166</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9668</contig_pos>
        <strand>+</strand>
        <context>GATTTTCGTA[G/T]TWAAYWGTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTA</left_flank>
        <right_flank>TCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTT</canonical>
            <polymorphic>TCTTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTAKTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTCCAGTAATCCTGTGTC</pcr_primer_p1>
		<pcr_primer_p2>TTAAAATCAACTTTTAGAAAACTCC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTAKTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30167</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9670</contig_pos>
        <strand>+</strand>
        <context>TTTTCGTAKT[A/T]AAYWGTCATY</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATT</left_flank>
        <right_flank>AAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTA</canonical>
            <polymorphic>TTTGAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTWAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>500 273 207 20</canonical_bands>
                <polymorphic_bands>707 273 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTTCCAGTAATCCTGTGTC</pcr_primer_p1>
		<pcr_primer_p2>TTAAAATCAACTTTTAGAAAACTCC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTWAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30168</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9673</contig_pos>
        <strand>+</strand>
        <context>TCGTAKTWAA[C/T]WGTCATYTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAA</left_flank>
        <right_flank>AGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAA</canonical>
            <polymorphic>GAATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAYAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>355 202 95 81 74 64 57 35 23 14</canonical_bands>
                <polymorphic_bands>355 202 155 95 64 57 35 23 14</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>503 273 207 17</canonical_bands>
                <polymorphic_bands>710 273 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTTCCAGTAATCCTGTGTC</pcr_primer_p1>
		<pcr_primer_p2>TTAAAATCAACTTTTAGAAAACTCC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAYAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30169</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9674</contig_pos>
        <strand>+</strand>
        <context>CGTAKTWAAY[A/T]GTCATYTTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAG</left_flank>
        <right_flank>GTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAAT</canonical>
            <polymorphic>AATTCTCCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGWGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>355 202 95 81 74 65 56 35 23 14</canonical_bands>
                <polymorphic_bands>355 202 155 95 65 56 35 23 14</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>504 273 207 16</canonical_bands>
                <polymorphic_bands>711 273 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTTCCAGTAATCCTGTGTC</pcr_primer_p1>
		<pcr_primer_p2>TTAAAATCAACTTTTAGAAAACTCC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGWGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30170</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9680</contig_pos>
        <strand>+</strand>
        <context>WAAYWGTCAT[C/T]TTCCTGGAAR</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCAT</left_flank>
        <right_flank>TTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAAT</canonical>
            <polymorphic>CCCAAAAATCCAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATYTTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTCCAGTAATCCTGTGTC</pcr_primer_p1>
		<pcr_primer_p2>TTAAAATCAACTTTTAGAAAACTCC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATYTTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30171</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>9690</contig_pos>
        <strand>+</strand>
        <context>YTTCCTGGAA[A/G]AATTTGGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAA</left_flank>
        <right_flank>AATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATT</canonical>
            <polymorphic>CAGAATTTTCGTCGGAGAAAATTTTGGAATGGAATTTGAGAATCTGAAAATTTTGTTTGCAGTTTTTCAAAATTCTAAAAAATATTGTCCCACCTCTTCCTCGACAATTATGAAATCCTCTTCATACTCAACCCGAATCCCATGTTCCTTTTCTTTCCCATTAAAAAATGAATCCGAAAAGTGGAATCTCCAAATTCCATTTTTCTGAATCGCATCAATTTGAATTCCGTATAAAATTTTCAGCGAATTTTTAGAATTAATCCATCCATTGTCAGGATCAAATAATTCATAAATATTCATTGATTTTCCAGTAATCCTGTGTCCATATTTCAAAAGAATTTTTCCCCAACTGCTAGCAAGTGTTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAARAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>133 125 122 117 91 66 65 40 38 31 30 27 22 16 16 13 12 11 8 7 7 3</canonical_bands>
                <polymorphic_bands>133 125 124 122 91 66 65 40 38 31 30 27 22 16 16 13 12 11 8 7 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGAAAACTCAATTGCTCAT</pcr_primer_p1>
		<pcr_primer_p2>GTTATTTTGAGATTTTTGCATTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAAC</canonical_amplicon>
		<polymorphic_amplicon>TCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAARAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30172</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>10052</contig_pos>
        <strand>+</strand>
        <context>TTTTTGGCAA[C/T]TTTTTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAA</left_flank>
        <right_flank>TTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTTCCACACTTTCCACGTAATTTAAAAGTTGCTCCAATTTTTTGTTAATTCGAAAAATTAATTTTCCAAAATTTCAAAAATCTGAAAAAATACGACTGACATTTATTGCTCAATGTTCCACCTATTCCTTTGCTTCCATCCACGTTTTCCATAAAAGCCTCTGAACGATCTCCTTCAAATTTCTCCTCGAAAAATGAGAAACCCACAGTTATGGATATGCCACATTTAGTGATGACCCAAATATTGGAAAATGTTGGTTTTCTTACAATGTAAGTTTTTTTCGAAGATTGGATTGCTGTAGACGCAATTTTTTTAAATTAACCTTATTATTAATTAACTTAATAGAA</canonical>
            <polymorphic>TTTCCTTTTTCGGAAATTTCGAATTTTCAACCAAAACGGAACAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAAYTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTTCCACACTTTCCACGTAATTTAAAAGTTGCTCCAATTTTTTGTTAATTCGAAAAATTAATTTTCCAAAATTTCAAAAATCTGAAAAAATACGACTGACATTTATTGCTCAATGTTCCACCTATTCCTTTGCTTCCATCCACGTTTTCCATAAAAGCCTCTGAACGATCTCCTTCAAATTTCTCCTCGAAAAATGAGAAACCCACAGTTATGGATATGCCACATTTAGTGATGACCCAAATATTGGAAAATGTTGGTTTTCTTACAATGTAAGTTTTTTTCGAAGATTGGATTGCTGTAGACGCAATTTTTTTAAATTAACCTTATTATTAATTAACTTAATAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>128 108 70 59 56 55 41 38 37 30 28 25 25 21 20 17 17 16 16 15 15 14 14 12 11 10 10 10 9 9 9 9 8 8 7 7 7 5 4</canonical_bands>
                <polymorphic_bands>128 108 70 65 59 56 41 38 37 30 28 25 25 21 20 17 17 16 16 15 15 14 14 12 11 10 10 9 9 9 9 8 8 7 7 7 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTTTCAAATTCGCATGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTAAATTACGTGGAAAGTGTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTTCCACACTTTCCACGTAATTTAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAAYTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTTCCACACTTTCCACGTAATTTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30173</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>10093</contig_pos>
        <strand></strand>
        <context>CCTTCGCTTT[T/C]GGGCAATCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTT</left_flank>
        <right_flank>GGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTTCCACACTTTCCACGTAATTTAAAAGTTGCTCCAATTTTTTGTTAATTCGAAAAATTAATTTTCCAAAATTTCAAAAATCTGAAAAAATACGACTGACATTTATTGCTCAATGTTCCACCTATTCCTTTGCTTCCATCCACGTTTTCCATAAAAGCCTCTGAACGATCTCCTTCAAATTTCTCCTCGAAAAATGAGAAACCCACAGTTATGGATATGCCACATTTAGTGATGACCCAAATATTGGAAAATGTTGGTTTTCTTACAATGTAAGTTTTTTTCGAAGATTGGATTGCTGTAGACGCAATTTTTTTAAATTAACCTTATTATTAATTAACTTAATAGAAGAATATGACAGGCGATCTTATTGTCCTGTCACACTATCATT</canonical>
            <polymorphic>CAATTGAGTCGAAAACTCAATTGCTCATCGTTCTCCGTAATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTYGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTTCCACACTTTCCACGTAATTTAAAAGTTGCTCCAATTTTTTGTTAATTCGAAAAATTAATTTTCCAAAATTTCAAAAATCTGAAAAAATACGACTGACATTTATTGCTCAATGTTCCACCTATTCCTTTGCTTCCATCCACGTTTTCCATAAAAGCCTCTGAACGATCTCCTTCAAATTTCTCCTCGAAAAATGAGAAACCCACAGTTATGGATATGCCACATTTAGTGATGACCCAAATATTGGAAAATGTTGGTTTTCTTACAATGTAAGTTTTTTTCGAAGATTGGATTGCTGTAGACGCAATTTTTTTAAATTAACCTTATTATTAATTAACTTAATAGAAGAATATGACAGGCGATCTTATTGTCCTGTCACACTATCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTTCAAATTCGCATGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTAAATTACGTGGAAAGTGTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTTCCACACTTTCCACGTAATTTAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTYGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTTCCACACTTTCCACGTAATTTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30174</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>10131</contig_pos>
        <strand>+</strand>
        <context>GAATTGATTT[A/C]AARTAATTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTT</left_flank>
        <right_flank>AAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTTCCACACTTTCCACGTAATTTAAAAGTTGCTCCAATTTTTTGTTAATTCGAAAAATTAATTTTCCAAAATTTCAAAAATCTGAAAAAATACGACTGACATTTATTGCTCAATGTTCCACCTATTCCTTTGCTTCCATCCACGTTTTCCATAAAAGCCTCTGAACGATCTCCTTCAAATTTCTCCTCGAAAAATGAGAAACCCACAGTTATGGATATGCCACATTTAGTGATGACCCAAATATTGGAAAATGTTGGTTTTCTTACAATGTAAGTTTTTTTCGAAGATTGGATTGCTGTAGACGCAATTTTTTTAAATTAACCTTATTATTAATTAACTTAATAGAAGAATATGACAGGCGATCTTATTGTCCTGTCACACTATCATTTGGTGTAAAAATCCAAACAAAATCTAAACTATGAAAAA</canonical>
            <polymorphic>AATTTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTMAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTTCCACACTTTCCACGTAATTTAAAAGTTGCTCCAATTTTTTGTTAATTCGAAAAATTAATTTTCCAAAATTTCAAAAATCTGAAAAAATACGACTGACATTTATTGCTCAATGTTCCACCTATTCCTTTGCTTCCATCCACGTTTTCCATAAAAGCCTCTGAACGATCTCCTTCAAATTTCTCCTCGAAAAATGAGAAACCCACAGTTATGGATATGCCACATTTAGTGATGACCCAAATATTGGAAAATGTTGGTTTTCTTACAATGTAAGTTTTTTTCGAAGATTGGATTGCTGTAGACGCAATTTTTTTAAATTAACCTTATTATTAATTAACTTAATAGAAGAATATGACAGGCGATCTTATTGTCCTGTCACACTATCATTTGGTGTAAAAATCCAAACAAAATCTAAACTATGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAACTCACAAATATAATGATCC</pcr_primer_p1>
		<pcr_primer_p2>GCAATAAATGTCAGTCGTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTTCCACACTTTCCACGTAATTTAAAAGTTGCTCCAATTTTTTGTTAATTCGAAAAATTAATTTTCCAAAATTTCAAAAATCTGAAAAAATACGACTGACATTTATTGC</canonical_amplicon>
		<polymorphic_amplicon>TGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTMAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTTCCACACTTTCCACGTAATTTAAAAGTTGCTCCAATTTTTTGTTAATTCGAAAAATTAATTTTCCAAAATTTCAAAAATCTGAAAAAATACGACTGACATTTATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30175</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>10134</contig_pos>
        <strand>+</strand>
        <context>TTGATTTMAA[A/G]TAATTTGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAA</left_flank>
        <right_flank>TAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTTCCACACTTTCCACGTAATTTAAAAGTTGCTCCAATTTTTTGTTAATTCGAAAAATTAATTTTCCAAAATTTCAAAAATCTGAAAAAATACGACTGACATTTATTGCTCAATGTTCCACCTATTCCTTTGCTTCCATCCACGTTTTCCATAAAAGCCTCTGAACGATCTCCTTCAAATTTCTCCTCGAAAAATGAGAAACCCACAGTTATGGATATGCCACATTTAGTGATGACCCAAATATTGGAAAATGTTGGTTTTCTTACAATGTAAGTTTTTTTCGAAGATTGGATTGCTGTAGACGCAATTTTTTTAAATTAACCTTATTATTAATTAACTTAATAGAAGAATATGACAGGCGATCTTATTGTCCTGTCACACTATCATTTGGTGTAAAAATCCAAACAAAATCTAAACTATGAAAAAAGT</canonical>
            <polymorphic>TTCGATTTTTGGAGAGATATTGAGATTTTCGTATTCAAGAGTCATATTCCTGGAAAAATTTGGAATTCTAGTTTTTTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAARTAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTTCCACACTTTCCACGTAATTTAAAAGTTGCTCCAATTTTTTGTTAATTCGAAAAATTAATTTTCCAAAATTTCAAAAATCTGAAAAAATACGACTGACATTTATTGCTCAATGTTCCACCTATTCCTTTGCTTCCATCCACGTTTTCCATAAAAGCCTCTGAACGATCTCCTTCAAATTTCTCCTCGAAAAATGAGAAACCCACAGTTATGGATATGCCACATTTAGTGATGACCCAAATATTGGAAAATGTTGGTTTTCTTACAATGTAAGTTTTTTTCGAAGATTGGATTGCTGTAGACGCAATTTTTTTAAATTAACCTTATTATTAATTAACTTAATAGAAGAATATGACAGGCGATCTTATTGTCCTGTCACACTATCATTTGGTGTAAAAATCCAAACAAAATCTAAACTATGAAAAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAACTCACAAATATAATGATCC</pcr_primer_p1>
		<pcr_primer_p2>GCAATAAATGTCAGTCGTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTTCCACACTTTCCACGTAATTTAAAAGTTGCTCCAATTTTTTGTTAATTCGAAAAATTAATTTTCCAAAATTTCAAAAATCTGAAAAAATACGACTGACATTTATTGC</canonical_amplicon>
		<polymorphic_amplicon>TGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAARTAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTTCCACACTTTCCACGTAATTTAAAAGTTGCTCCAATTTTTTGTTAATTCGAAAAATTAATTTTCCAAAATTTCAAAAATCTGAAAAAATACGACTGACATTTATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30176</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>10209</contig_pos>
        <strand>+</strand>
        <context>TTCTGTGTTT[C/T]CACACTTTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTT</left_flank>
        <right_flank>CACACTTTCCACGTAATTTAAAAGTTGCTCCAATTTTTTGTTAATTCGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTTCCACACTTTCCACGTAATTTAAAAGTTGCTCCAATTTTTTGTTAATTCGAAAAATTAATTTTCCAAAATTTCAAAAATCTGAAAAAATACGACTGACATTTATTGCTCAATGTTCCACCTATTCCTTTGCTTCCATCCACGTTTTCCATAAAAGCCTCTGAACGATCTCCTTCAAATTTCTCCTCGAAAAATGAGAAACCCACAGTTATGGATATGCCACATTTAGTGATGACCCAAATATTGGAAAATGTTGGTTTTCTTACAATGTAAGTTTTTTTCGAAGATTGGATTGCTGTAGACGCAATTTTTTTAAATTAACCTTATTATTAATTAACTTAATAGAAGAATATGACAGGCGATCTTATTGTCCTGTCACACTATCATTTGGTGTAAAAATCCAAACAAAATCTAAACTATGAAAAAAGTTATAGTCGTTTAAAGTTGAATTTAATGAAATTTTGGTGCTGCTTTTGGTACTGCTGAGCAGTACCAAAATCTCAT</canonical>
            <polymorphic>TTTTTTGGAGTTTTCTAAAAGTTGATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTTYCACACTTTCCACGTAATTTAAAAGTTGCTCCAATTTTTTGTTAATTCGAAAAATTAATTTTCCAAAATTTCAAAAATCTGAAAAAATACGACTGACATTTATTGCTCAATGTTCCACCTATTCCTTTGCTTCCATCCACGTTTTCCATAAAAGCCTCTGAACGATCTCCTTCAAATTTCTCCTCGAAAAATGAGAAACCCACAGTTATGGATATGCCACATTTAGTGATGACCCAAATATTGGAAAATGTTGGTTTTCTTACAATGTAAGTTTTTTTCGAAGATTGGATTGCTGTAGACGCAATTTTTTTAAATTAACCTTATTATTAATTAACTTAATAGAAGAATATGACAGGCGATCTTATTGTCCTGTCACACTATCATTTGGTGTAAAAATCCAAACAAAATCTAAACTATGAAAAAAGTTATAGTCGTTTAAAGTTGAATTTAATGAAATTTTGGTGCTGCTTTTGGTACTGCTGAGCAGTACCAAAATCTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAACTCACAAATATAATGATCC</pcr_primer_p1>
		<pcr_primer_p2>GCAATAAATGTCAGTCGTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTTCCACACTTTCCACGTAATTTAAAAGTTGCTCCAATTTTTTGTTAATTCGAAAAATTAATTTTCCAAAATTTCAAAAATCTGAAAAAATACGACTGACATTTATTGC</canonical_amplicon>
		<polymorphic_amplicon>TGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTTYCACACTTTCCACGTAATTTAAAAGTTGCTCCAATTTTTTGTTAATTCGAAAAATTAATTTTCCAAAATTTCAAAAATCTGAAAAAATACGACTGACATTTATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30177</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>10233</contig_pos>
        <strand>+</strand>
        <context>TAATTTAAAA[G/T]KTGCTCCAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACCAAATTTCCCATTTTTCTGTGTTTCCACACTTTCCACGTAATTTAAAA</left_flank>
        <right_flank>TTGCTCCAATTTTTTGTTAATTCGAAAAATTAATTTTCCAAAATTTCAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTTCCACACTTTCCACGTAATTTAAAAGTTGCTCCAATTTTTTGTTAATTCGAAAAATTAATTTTCCAAAATTTCAAAAATCTGAAAAAATACGACTGACATTTATTGCTCAATGTTCCACCTATTCCTTTGCTTCCATCCACGTTTTCCATAAAAGCCTCTGAACGATCTCCTTCAAATTTCTCCTCGAAAAATGAGAAACCCACAGTTATGGATATGCCACATTTAGTGATGACCCAAATATTGGAAAATGTTGGTTTTCTTACAATGTAAGTTTTTTTCGAAGATTGGATTGCTGTAGACGCAATTTTTTTAAATTAACCTTATTATTAATTAACTTAATAGAAGAATATGACAGGCGATCTTATTGTCCTGTCACACTATCATTTGGTGTAAAAATCCAAACAAAATCTAAACTATGAAAAAAGTTATAGTCGTTTAAAGTTGAATTTAATGAAATTTTGGTGCTGCTTTTGGTACTGCTGAGCAGTACCAAAATCTCATTATTATATTTTTAACGTCTATAAC</canonical>
            <polymorphic>ATTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTTCCACACTTTCCACGTAATTTAAAAKTTGCTCCAATTTTTTGTTAATTCGAAAAATTAATTTTCCAAAATTTCAAAAATCTGAAAAAATACGACTGACATTTATTGCTCAATGTTCCACCTATTCCTTTGCTTCCATCCACGTTTTCCATAAAAGCCTCTGAACGATCTCCTTCAAATTTCTCCTCGAAAAATGAGAAACCCACAGTTATGGATATGCCACATTTAGTGATGACCCAAATATTGGAAAATGTTGGTTTTCTTACAATGTAAGTTTTTTTCGAAGATTGGATTGCTGTAGACGCAATTTTTTTAAATTAACCTTATTATTAATTAACTTAATAGAAGAATATGACAGGCGATCTTATTGTCCTGTCACACTATCATTTGGTGTAAAAATCCAAACAAAATCTAAACTATGAAAAAAGTTATAGTCGTTTAAAGTTGAATTTAATGAAATTTTGGTGCTGCTTTTGGTACTGCTGAGCAGTACCAAAATCTCATTATTATATTTTTAACGTCTATAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAACTCACAAATATAATGATCC</pcr_primer_p1>
		<pcr_primer_p2>GCAATAAATGTCAGTCGTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTTCCACACTTTCCACGTAATTTAAAAGTTGCTCCAATTTTTTGTTAATTCGAAAAATTAATTTTCCAAAATTTCAAAAATCTGAAAAAATACGACTGACATTTATTGC</canonical_amplicon>
		<polymorphic_amplicon>TGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTTCCACACTTTCCACGTAATTTAAAAKTTGCTCCAATTTTTTGTTAATTCGAAAAATTAATTTTCCAAAATTTCAAAAATCTGAAAAAATACGACTGACATTTATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30178</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>10234</contig_pos>
        <strand>+</strand>
        <context>AATTTAAAAK[G/T]TGCTCCAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCAAATTTCCCATTTTTCTGTGTTTCCACACTTTCCACGTAATTTAAAAG</left_flank>
        <right_flank>TGCTCCAATTTTTTGTTAATTCGAAAAATTAATTTTCCAAAATTTCAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTTCCACACTTTCCACGTAATTTAAAAGTTGCTCCAATTTTTTGTTAATTCGAAAAATTAATTTTCCAAAATTTCAAAAATCTGAAAAAATACGACTGACATTTATTGCTCAATGTTCCACCTATTCCTTTGCTTCCATCCACGTTTTCCATAAAAGCCTCTGAACGATCTCCTTCAAATTTCTCCTCGAAAAATGAGAAACCCACAGTTATGGATATGCCACATTTAGTGATGACCCAAATATTGGAAAATGTTGGTTTTCTTACAATGTAAGTTTTTTTCGAAGATTGGATTGCTGTAGACGCAATTTTTTTAAATTAACCTTATTATTAATTAACTTAATAGAAGAATATGACAGGCGATCTTATTGTCCTGTCACACTATCATTTGGTGTAAAAATCCAAACAAAATCTAAACTATGAAAAAAGTTATAGTCGTTTAAAGTTGAATTTAATGAAATTTTGGTGCTGCTTTTGGTACTGCTGAGCAGTACCAAAATCTCATTATTATATTTTTAACGTCTATAACT</canonical>
            <polymorphic>TTTTAATTTATCAAAAAAGGATTCAAATAAATTTTTAGTTTCAAAATTGAAATAATTTCGAATTCTTGTAATTCAAATAAGAGTGCTCAGAATGCAAAAATCTCAAAATAACACAAGTTTTTATAAATTTCAAATAAAAACATCTTTTTTAATTCATAAAAAAGTTCAGAAAATACTAACCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTTCCACACTTTCCACGTAATTTAAAAGKTGCTCCAATTTTTTGTTAATTCGAAAAATTAATTTTCCAAAATTTCAAAAATCTGAAAAAATACGACTGACATTTATTGCTCAATGTTCCACCTATTCCTTTGCTTCCATCCACGTTTTCCATAAAAGCCTCTGAACGATCTCCTTCAAATTTCTCCTCGAAAAATGAGAAACCCACAGTTATGGATATGCCACATTTAGTGATGACCCAAATATTGGAAAATGTTGGTTTTCTTACAATGTAAGTTTTTTTCGAAGATTGGATTGCTGTAGACGCAATTTTTTTAAATTAACCTTATTATTAATTAACTTAATAGAAGAATATGACAGGCGATCTTATTGTCCTGTCACACTATCATTTGGTGTAAAAATCCAAACAAAATCTAAACTATGAAAAAAGTTATAGTCGTTTAAAGTTGAATTTAATGAAATTTTGGTGCTGCTTTTGGTACTGCTGAGCAGTACCAAAATCTCATTATTATATTTTTAACGTCTATAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAACTCACAAATATAATGATCC</pcr_primer_p1>
		<pcr_primer_p2>GCAATAAATGTCAGTCGTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTTCCACACTTTCCACGTAATTTAAAAGTTGCTCCAATTTTTTGTTAATTCGAAAAATTAATTTTCCAAAATTTCAAAAATCTGAAAAAATACGACTGACATTTATTGC</canonical_amplicon>
		<polymorphic_amplicon>TGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTTCCACACTTTCCACGTAATTTAAAAGKTGCTCCAATTTTTTGTTAATTCGAAAAATTAATTTTCCAAAATTTCAAAAATCTGAAAAAATACGACTGACATTTATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30179</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>10413</contig_pos>
        <strand>+</strand>
        <context>GAAACCCACA[A/G]TTATGGATAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTCTGAACGATCTCCTTCAAATTTCTCCTCGAAAAATGAGAAACCCACA</left_flank>
        <right_flank>TTATGGATATGCCACATTTAGTGATGACCCAAATATTGGAAAATGTTGGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTTCCACACTTTCCACGTAATTTAAAAGTTGCTCCAATTTTTTGTTAATTCGAAAAATTAATTTTCCAAAATTTCAAAAATCTGAAAAAATACGACTGACATTTATTGCTCAATGTTCCACCTATTCCTTTGCTTCCATCCACGTTTTCCATAAAAGCCTCTGAACGATCTCCTTCAAATTTCTCCTCGAAAAATGAGAAACCCACAGTTATGGATATGCCACATTTAGTGATGACCCAAATATTGGAAAATGTTGGTTTTCTTACAATGTAAGTTTTTTTCGAAGATTGGATTGCTGTAGACGCAATTTTTTTAAATTAACCTTATTATTAATTAACTTAATAGAAGAATATGACAGGCGATCTTATTGTCCTGTCACACTATCATTTGGTGTAAAAATCCAAACAAAATCTAAACTATGAAAAAAGTTATAGTCGTTTAAAGTTGAATTTAATGAAATTTTGGTGCTGCTTTTGGTACTGCTGAGCAGTACCAAAATCTCATTATTATATTTTTAACGTCTATAACTTTTCTCATAGTCTCTCAGAAAGCCGCTGAAACTTTTGAGCCGCTGAAACGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGATTCTGAACCAATTTTTTCAAATTTTCTAACATTTCCCACTCTATATTTACCAAAGAGCCAAAAACTATACAATTTATTGACA</canonical>
            <polymorphic>CCATTTAACTCCTCCAAGGGACAAGATTTCGATTGATGGAAAATTATTTTCTTCTTCAAAAAGTTGATAGAAATTTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTTCCACACTTTCCACGTAATTTAAAAGTTGCTCCAATTTTTTGTTAATTCGAAAAATTAATTTTCCAAAATTTCAAAAATCTGAAAAAATACGACTGACATTTATTGCTCAATGTTCCACCTATTCCTTTGCTTCCATCCACGTTTTCCATAAAAGCCTCTGAACGATCTCCTTCAAATTTCTCCTCGAAAAATGAGAAACCCACARTTATGGATATGCCACATTTAGTGATGACCCAAATATTGGAAAATGTTGGTTTTCTTACAATGTAAGTTTTTTTCGAAGATTGGATTGCTGTAGACGCAATTTTTTTAAATTAACCTTATTATTAATTAACTTAATAGAAGAATATGACAGGCGATCTTATTGTCCTGTCACACTATCATTTGGTGTAAAAATCCAAACAAAATCTAAACTATGAAAAAAGTTATAGTCGTTTAAAGTTGAATTTAATGAAATTTTGGTGCTGCTTTTGGTACTGCTGAGCAGTACCAAAATCTCATTATTATATTTTTAACGTCTATAACTTTTCTCATAGTCTCTCAGAAAGCCGCTGAAACTTTTGAGCCGCTGAAACGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGATTCTGAACCAATTTTTTCAAATTTTCTAACATTTCCCACTCTATATTTACCAAAGAGCCAAAAACTATACAATTTATTGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCCATAAAAGCCTCTGAAC</pcr_primer_p1>
		<pcr_primer_p2>TACACCAAATGATAGTGTGACAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCCATAAAAGCCTCTGAACGATCTCCTTCAAATTTCTCCTCGAAAAATGAGAAACCCACAGTTATGGATATGCCACATTTAGTGATGACCCAAATATTGGAAAATGTTGGTTTTCTTACAATGTAAGTTTTTTTCGAAGATTGGATTGCTGTAGACGCAATTTTTTTAAATTAACCTTATTATTAATTAACTTAATAGAAGAATATGACAGGCGATCTTATTGTCCTGTCACACTATCATTTGGTGTA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCATAAAAGCCTCTGAACGATCTCCTTCAAATTTCTCCTCGAAAAATGAGAAACCCACARTTATGGATATGCCACATTTAGTGATGACCCAAATATTGGAAAATGTTGGTTTTCTTACAATGTAAGTTTTTTTCGAAGATTGGATTGCTGTAGACGCAATTTTTTTAAATTAACCTTATTATTAATTAACTTAATAGAAGAATATGACAGGCGATCTTATTGTCCTGTCACACTATCATTTGGTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30180</snp_id>
        <super_contig>c005100854.Contig2</super_contig>
        <contig_pos>10487</contig_pos>
        <strand>+</strand>
        <context>AAGTTTTTTT[C/T]GAAGATTGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGACCCAAATATTGGAAAATGTTGGTTTTCTTACAATGTAAGTTTTTTT</left_flank>
        <right_flank>GAAGATTGGATTGCTGTAGACGCAATTTTTTTAAATTAACCTTATTATTA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTTCCACACTTTCCACGTAATTTAAAAGTTGCTCCAATTTTTTGTTAATTCGAAAAATTAATTTTCCAAAATTTCAAAAATCTGAAAAAATACGACTGACATTTATTGCTCAATGTTCCACCTATTCCTTTGCTTCCATCCACGTTTTCCATAAAAGCCTCTGAACGATCTCCTTCAAATTTCTCCTCGAAAAATGAGAAACCCACAGTTATGGATATGCCACATTTAGTGATGACCCAAATATTGGAAAATGTTGGTTTTCTTACAATGTAAGTTTTTTTCGAAGATTGGATTGCTGTAGACGCAATTTTTTTAAATTAACCTTATTATTAATTAACTTAATAGAAGAATATGACAGGCGATCTTATTGTCCTGTCACACTATCATTTGGTGTAAAAATCCAAACAAAATCTAAACTATGAAAAAAGTTATAGTCGTTTAAAGTTGAATTTAATGAAATTTTGGTGCTGCTTTTGGTACTGCTGAGCAGTACCAAAATCTCATTATTATATTTTTAACGTCTATAACTTTTCTCATAGTCTCTCAGAAAGCCGCTGAAACTTTTGAGCCGCTGAAACGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGATTCTGAACCAATTTTTTCAAATTTTCTAACATTTCCCACTCTATATTTACCAAAGAGCCAAAAACTATACAATTTATTGACACCTGTGCTATAATTACCATGCTATAATCAAGTTTTCTAGTTAGTCTGGACACGGAAACTTTTTTTTCAGTAGTT</canonical>
            <polymorphic>TTTCAAATTCGCATGATCCATGTTTAGAAACGAAAAAAAAAAGAATTCATTTAATTTTTGGCAATTTTTTTTTTGAAACTCACAAATATAATGATCCTTCGCTTTTGGGCAATCTTCAATTGATTCCATAATTGAATTGATTTCAAATAATTTGAAAAAAAGGAAAGAATATTTTGAATTTTACAATTTAAATCTACCAAATTTCCCATTTTTCTGTGTTTCCACACTTTCCACGTAATTTAAAAGTTGCTCCAATTTTTTGTTAATTCGAAAAATTAATTTTCCAAAATTTCAAAAATCTGAAAAAATACGACTGACATTTATTGCTCAATGTTCCACCTATTCCTTTGCTTCCATCCACGTTTTCCATAAAAGCCTCTGAACGATCTCCTTCAAATTTCTCCTCGAAAAATGAGAAACCCACAGTTATGGATATGCCACATTTAGTGATGACCCAAATATTGGAAAATGTTGGTTTTCTTACAATGTAAGTTTTTTTYGAAGATTGGATTGCTGTAGACGCAATTTTTTTAAATTAACCTTATTATTAATTAACTTAATAGAAGAATATGACAGGCGATCTTATTGTCCTGTCACACTATCATTTGGTGTAAAAATCCAAACAAAATCTAAACTATGAAAAAAGTTATAGTCGTTTAAAGTTGAATTTAATGAAATTTTGGTGCTGCTTTTGGTACTGCTGAGCAGTACCAAAATCTCATTATTATATTTTTAACGTCTATAACTTTTCTCATAGTCTCTCAGAAAGCCGCTGAAACTTTTGAGCCGCTGAAACGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGATTCTGAACCAATTTTTTCAAATTTTCTAACATTTCCCACTCTATATTTACCAAAGAGCCAAAAACTATACAATTTATTGACACCTGTGCTATAATTACCATGCTATAATCAAGTTTTCTAGTTAGTCTGGACACGGAAACTTTTTTTTCAGTAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 268 231</canonical_bands>
                <polymorphic_bands>732 268</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 269 137 94</canonical_bands>
                <polymorphic_bands>594 269 137</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCCATAAAAGCCTCTGAAC</pcr_primer_p1>
		<pcr_primer_p2>TACACCAAATGATAGTGTGACAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCCATAAAAGCCTCTGAACGATCTCCTTCAAATTTCTCCTCGAAAAATGAGAAACCCACAGTTATGGATATGCCACATTTAGTGATGACCCAAATATTGGAAAATGTTGGTTTTCTTACAATGTAAGTTTTTTTCGAAGATTGGATTGCTGTAGACGCAATTTTTTTAAATTAACCTTATTATTAATTAACTTAATAGAAGAATATGACAGGCGATCTTATTGTCCTGTCACACTATCATTTGGTGTA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCATAAAAGCCTCTGAACGATCTCCTTCAAATTTCTCCTCGAAAAATGAGAAACCCACAGTTATGGATATGCCACATTTAGTGATGACCCAAATATTGGAAAATGTTGGTTTTCTTACAATGTAAGTTTTTTTYGAAGATTGGATTGCTGTAGACGCAATTTTTTTAAATTAACCTTATTATTAATTAACTTAATAGAAGAATATGACAGGCGATCTTATTGTCCTGTCACACTATCATTTGGTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30181</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>6249</contig_pos>
        <strand>+</strand>
        <context>TGATCAATTG[G/T]TTTTTTTGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATACCCTTCATCTGATTATGCTTAACAGATCACAAGATATTGATCAATTG</left_flank>
        <right_flank>TTTTTTTGGTGATGACTAATAAAATGTGGTAGAAATGCCCTCTTTTTTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCAGCTTCCGGATACCGAAAAAGTAAACGGAGCTCGGCTGATCAAGAAGATGCTGCAGCTTTGTCCGAGAAAACGAGTCAAGGCGTGTCGTGCCCAAACCAATTCGTGGTTCTTGACAACACCACCACCAGCCGAGACTATTCCGGAAGTTGTGCGAGCCGTCATGGTCAGAAAATTCTATTGAAATCCTCCCTATTATATCTTATTTTCAGACTCAGCGTGATGTTTTAAGAAGGTGAAACTGCAAGTATGGAAGATGCCCACAAAATTAATCAAGGAATCTGGATCTGTTCAATAACTTTCATATTACCAAACATTTGGGCCGCAATTCACTAACAATAATCTAGCTGAGATGTTCTTTATCACCTCTAATAATCAGTTTGCACATTATCATACAGCAATCTTACTTTATTTACTCTCCAACTCTTTCATCCTCCTTTTGTCCCATACCCTTCATCTGATTATGCTTAACAGATCACAAGATATTGATCAATTGTTTTTTTTGGTGATGACTAATAAAATGTGGTAGAAATGCCCTCTTTTTTCCTCTGTTTCTCTTTTCCCTCTCAACAGAACCATGTTCCCATACTGTTTTCACTTAAAACACCCTCGCTCTTTCCCCAGATTTTATTGATATGCAAAAGTCAATTTTCGGTTTTGCCTATGCAAATTCGAATAGCCTGATCATTTCTACTATTTTGTTCTTGTGGAGAGTTGTTTCTGAGAGAAGCATCAACGTGTAAAAAGCTATAATGTATATCCCATTTTTTATTCTGAAGAATAAAAAAATATATATAATGATGTTGTACGGTATTCTACCGTGTTTTCTTTTTTAAAATTCTCTTTCCAAGTCTAAAGGAGAGAAATCTCCCCCCGAACACACGTGCAAGAGGTGTGGATTACTGTATCCGCGCGCGAAACTGTGTGCGCGCCAAAACGCGTCTCCTCTCTCGACAAATTCTTATCGTTTTCTTTAGTTTTCGCTGGTGTTCGCTCA</canonical>
            <polymorphic>ATTTCAGCTTCCGGATACCGAAAAAGTAAACGGAGCTCGGCTGATCAAGAAGATGCTGCAGCTTTGTCCGAGAAAACGAGTCAAGGCGTGTCGTGCCCAAACCAATTCGTGGTTCTTGACAACACCACCACCAGCCGAGACTATTCCGGAAGTTGTGCGAGCCGTCATGGTCAGAAAATTCTATTGAAATCCTCCCTATTATATCTTATTTTCAGACTCAGCGTGATGTTTTAAGAAGGTGAAACTGCAAGTATGGAAGATGCCCACAAAATTAATCAAGGAATCTGGATCTGTTCAATAACTTTCATATTACCAAACATTTGGGCCGCAATTCACTAACAATAATCTAGCTGAGATGTTCTTTATCACCTCTAATAATCAGTTTGCACATTATCATACAGCAATCTTACTTTATTTACTCTCCAACTCTTTCATCCTCCTTTTGTCCCATACCCTTCATCTGATTATGCTTAACAGATCACAAGATATTGATCAATTGKTTTTTTTGGTGATGACTAATAAAATGTGGTAGAAATGCCCTCTTTTTTCCTCTGTTTCTCTTTTCCCTCTCAACAGAACCATGTTCCCATACTGTTTTCACTTAAAACACCCTCGCTCTTTCCCCAGATTTTATTGATATGCAAAAGTCAATTTTCGGTTTTGCCTATGCAAATTCGAATAGCCTGATCATTTCTACTATTTTGTTCTTGTGGAGAGTTGTTTCTGAGAGAAGCATCAACGTGTAAAAAGCTATAATGTATATCCCATTTTTTATTCTGAAGAATAAAAAAATATATATAATGATGTTGTACGGTATTCTACCGTGTTTTCTTTTTTAAAATTCTCTTTCCAAGTCTAAAGGAGAGAAATCTCCCCCCGAACACACGTGCAAGAGGTGTGGATTACTGTATCCGCGCGCGAAACTGTGTGCGCGCCAAAACGCGTCTCCTCTCTCGACAAATTCTTATCGTTTTCTTTAGTTTTCGCTGGTGTTCGCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGCTGAGATGTTCTTTATCACC</pcr_primer_p1>
		<pcr_primer_p2>AGTATGGGAACATGGTTCTGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TAGCTGAGATGTTCTTTATCACCTCTAATAATCAGTTTGCACATTATCATACAGCAATCTTACTTTATTTACTCTCCAACTCTTTCATCCTCCTTTTGTCCCATACCCTTCATCTGATTATGCTTAACAGATCACAAGATATTGATCAATTGTTTTTTTTGGTGATGACTAATAAAATGTGGTAGAAATGCCCTCTTTTTTCCTCTGTTTCTCTTTTCCCTCTCAACAGAACCATGTTCCCATACT</canonical_amplicon>
		<polymorphic_amplicon>TAGCTGAGATGTTCTTTATCACCTCTAATAATCAGTTTGCACATTATCATACAGCAATCTTACTTTATTTACTCTCCAACTCTTTCATCCTCCTTTTGTCCCATACCCTTCATCTGATTATGCTTAACAGATCACAAGATATTGATCAATTGKTTTTTTTGGTGATGACTAATAAAATGTGGTAGAAATGCCCTCTTTTTTCCTCTGTTTCTCTTTTCCCTCTCAACAGAACCATGTTCCCATACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30182</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>6286</contig_pos>
        <strand></strand>
        <context>TGGTAGAAAT[G/T]CCCTCTTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATTGATCAATTGTTTTTTTTGGTGATGACTAATAAAATGTGGTAGAAAT</left_flank>
        <right_flank>CCCTCTTTTTTCCTCTGTTTCTCTTTTCCCTCTCAACAGAACCATGTTCC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGCTGATCAAGAAGATGCTGCAGCTTTGTCCGAGAAAACGAGTCAAGGCGTGTCGTGCCCAAACCAATTCGTGGTTCTTGACAACACCACCACCAGCCGAGACTATTCCGGAAGTTGTGCGAGCCGTCATGGTCAGAAAATTCTATTGAAATCCTCCCTATTATATCTTATTTTCAGACTCAGCGTGATGTTTTAAGAAGGTGAAACTGCAAGTATGGAAGATGCCCACAAAATTAATCAAGGAATCTGGATCTGTTCAATAACTTTCATATTACCAAACATTTGGGCCGCAATTCACTAACAATAATCTAGCTGAGATGTTCTTTATCACCTCTAATAATCAGTTTGCACATTATCATACAGCAATCTTACTTTATTTACTCTCCAACTCTTTCATCCTCCTTTTGTCCCATACCCTTCATCTGATTATGCTTAACAGATCACAAGATATTGATCAATTGTTTTTTTTGGTGATGACTAATAAAATGTGGTAGAAATGCCCTCTTTTTTCCTCTGTTTCTCTTTTCCCTCTCAACAGAACCATGTTCCCATACTGTTTTCACTTAAAACACCCTCGCTCTTTCCCCAGATTTTATTGATATGCAAAAGTCAATTTTCGGTTTTGCCTATGCAAATTCGAATAGCCTGATCATTTCTACTATTTTGTTCTTGTGGAGAGTTGTTTCTGAGAGAAGCATCAACGTGTAAAAAGCTATAATGTATATCCCATTTTTTATTCTGAAGAATAAAAAAATATATATAATGATGTTGTACGGTATTCTACCGTGTTTTCTTTTTTAAAATTCTCTTTCCAAGTCTAAAGGAGAGAAATCTCCCCCCGAACACACGTGCAAGAGGTGTGGATTACTGTATCCGCGCGCGAAACTGTGTGCGCGCCAAAACGCGTCTCCTCTCTCGACAAATTCTTATCGTTTTCTTTAGTTTTCGCTGGTGTTCGCTCACGATTGGTGACGACCCGTTAAAGTGTGGCTCACTAGT</canonical>
            <polymorphic>CGGCTGATCAAGAAGATGCTGCAGCTTTGTCCGAGAAAACGAGTCAAGGCGTGTCGTGCCCAAACCAATTCGTGGTTCTTGACAACACCACCACCAGCCGAGACTATTCCGGAAGTTGTGCGAGCCGTCATGGTCAGAAAATTCTATTGAAATCCTCCCTATTATATCTTATTTTCAGACTCAGCGTGATGTTTTAAGAAGGTGAAACTGCAAGTATGGAAGATGCCCACAAAATTAATCAAGGAATCTGGATCTGTTCAATAACTTTCATATTACCAAACATTTGGGCCGCAATTCACTAACAATAATCTAGCTGAGATGTTCTTTATCACCTCTAATAATCAGTTTGCACATTATCATACAGCAATCTTACTTTATTTACTCTCCAACTCTTTCATCCTCCTTTTGTCCCATACCCTTCATCTGATTATGCTTAACAGATCACAAGATATTGATCAATTGTTTTTTTTGGTGATGACTAATAAAATGTGGTAGAAATKCCCTCTTTTTTCCTCTGTTTCTCTTTTCCCTCTCAACAGAACCATGTTCCCATACTGTTTTCACTTAAAACACCCTCGCTCTTTCCCCAGATTTTATTGATATGCAAAAGTCAATTTTCGGTTTTGCCTATGCAAATTCGAATAGCCTGATCATTTCTACTATTTTGTTCTTGTGGAGAGTTGTTTCTGAGAGAAGCATCAACGTGTAAAAAGCTATAATGTATATCCCATTTTTTATTCTGAAGAATAAAAAAATATATATAATGATGTTGTACGGTATTCTACCGTGTTTTCTTTTTTAAAATTCTCTTTCCAAGTCTAAAGGAGAGAAATCTCCCCCCGAACACACGTGCAAGAGGTGTGGATTACTGTATCCGCGCGCGAAACTGTGTGCGCGCCAAAACGCGTCTCCTCTCTCGACAAATTCTTATCGTTTTCTTTAGTTTTCGCTGGTGTTCGCTCACGATTGGTGACGACCCGTTAAAGTGTGGCTCACTAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATTATGCTTAACAGATCACAA</pcr_primer_p1>
		<pcr_primer_p2>TCCACAAGAACAAAATAGTAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TGATTATGCTTAACAGATCACAAGATATTGATCAATTGTTTTTTTTGGTGATGACTAATAAAATGTGGTAGAAATGCCCTCTTTTTTCCTCTGTTTCTCTTTTCCCTCTCAACAGAACCATGTTCCCATACTGTTTTCACTTAAAACACCCTCGCTCTTTCCCCAGATTTTATTGATATGCAAAAGTCAATTTTCGGTTTTGCCTATGCAAATTCGAATAGCCTGATCATTTCTACTATTTTGTTCTTGTGGA</canonical_amplicon>
		<polymorphic_amplicon>TGATTATGCTTAACAGATCACAAGATATTGATCAATTGTTTTTTTTGGTGATGACTAATAAAATGTGGTAGAAATKCCCTCTTTTTTCCTCTGTTTCTCTTTTCCCTCTCAACAGAACCATGTTCCCATACTGTTTTCACTTAAAACACCCTCGCTCTTTCCCCAGATTTTATTGATATGCAAAAGTCAATTTTCGGTTTTGCCTATGCAAATTCGAATAGCCTGATCATTTCTACTATTTTGTTCTTGTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30183</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>6353</contig_pos>
        <strand>+</strand>
        <context>GTTTTCACTT[A/C]AAACACCCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTTCTCTTTTCCCTCTCAACAGAACCATGTTCCCATACTGTTTTCACTT</left_flank>
        <right_flank>AAACACCCTCGCTCTTTCCCCAGATTTTATTGATATGCAAAAGTCAATTT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCGTGGTTCTTGACAACACCACCACCAGCCGAGACTATTCCGGAAGTTGTGCGAGCCGTCATGGTCAGAAAATTCTATTGAAATCCTCCCTATTATATCTTATTTTCAGACTCAGCGTGATGTTTTAAGAAGGTGAAACTGCAAGTATGGAAGATGCCCACAAAATTAATCAAGGAATCTGGATCTGTTCAATAACTTTCATATTACCAAACATTTGGGCCGCAATTCACTAACAATAATCTAGCTGAGATGTTCTTTATCACCTCTAATAATCAGTTTGCACATTATCATACAGCAATCTTACTTTATTTACTCTCCAACTCTTTCATCCTCCTTTTGTCCCATACCCTTCATCTGATTATGCTTAACAGATCACAAGATATTGATCAATTGTTTTTTTTGGTGATGACTAATAAAATGTGGTAGAAATGCCCTCTTTTTTCCTCTGTTTCTCTTTTCCCTCTCAACAGAACCATGTTCCCATACTGTTTTCACTTAAAACACCCTCGCTCTTTCCCCAGATTTTATTGATATGCAAAAGTCAATTTTCGGTTTTGCCTATGCAAATTCGAATAGCCTGATCATTTCTACTATTTTGTTCTTGTGGAGAGTTGTTTCTGAGAGAAGCATCAACGTGTAAAAAGCTATAATGTATATCCCATTTTTTATTCTGAAGAATAAAAAAATATATATAATGATGTTGTACGGTATTCTACCGTGTTTTCTTTTTTAAAATTCTCTTTCCAAGTCTAAAGGAGAGAAATCTCCCCCCGAACACACGTGCAAGAGGTGTGGATTACTGTATCCGCGCGCGAAACTGTGTGCGCGCCAAAACGCGTCTCCTCTCTCGACAAATTCTTATCGTTTTCTTTAGTTTTCGCTGGTGTTCGCTCACGATTGGTGACGACCCGTTAAAGTGTGGCTCACTAGTTTTAAAGGTTTTATAGTGGTTTATTGAGTAAATTCAATAAATAGTGTTTTATAGGAATTCTGTGTTT</canonical>
            <polymorphic>ATTCGTGGTTCTTGACAACACCACCACCAGCCGAGACTATTCCGGAAGTTGTGCGAGCCGTCATGGTCAGAAAATTCTATTGAAATCCTCCCTATTATATCTTATTTTCAGACTCAGCGTGATGTTTTAAGAAGGTGAAACTGCAAGTATGGAAGATGCCCACAAAATTAATCAAGGAATCTGGATCTGTTCAATAACTTTCATATTACCAAACATTTGGGCCGCAATTCACTAACAATAATCTAGCTGAGATGTTCTTTATCACCTCTAATAATCAGTTTGCACATTATCATACAGCAATCTTACTTTATTTACTCTCCAACTCTTTCATCCTCCTTTTGTCCCATACCCTTCATCTGATTATGCTTAACAGATCACAAGATATTGATCAATTGTTTTTTTTGGTGATGACTAATAAAATGTGGTAGAAATGCCCTCTTTTTTCCTCTGTTTCTCTTTTCCCTCTCAACAGAACCATGTTCCCATACTGTTTTCACTTMAAACACCCTCGCTCTTTCCCCAGATTTTATTGATATGCAAAAGTCAATTTTCGGTTTTGCCTATGCAAATTCGAATAGCCTGATCATTTCTACTATTTTGTTCTTGTGGAGAGTTGTTTCTGAGAGAAGCATCAACGTGTAAAAAGCTATAATGTATATCCCATTTTTTATTCTGAAGAATAAAAAAATATATATAATGATGTTGTACGGTATTCTACCGTGTTTTCTTTTTTAAAATTCTCTTTCCAAGTCTAAAGGAGAGAAATCTCCCCCCGAACACACGTGCAAGAGGTGTGGATTACTGTATCCGCGCGCGAAACTGTGTGCGCGCCAAAACGCGTCTCCTCTCTCGACAAATTCTTATCGTTTTCTTTAGTTTTCGCTGGTGTTCGCTCACGATTGGTGACGACCCGTTAAAGTGTGGCTCACTAGTTTTAAAGGTTTTATAGTGGTTTATTGAGTAAATTCAATAAATAGTGTTTTATAGGAATTCTGTGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>234 199 182 131 127 65 41 21</canonical_bands>
                <polymorphic_bands>365 199 182 127 65 41 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGATGACTAATAAAATGTGGT</pcr_primer_p1>
		<pcr_primer_p2>ATTATAGCTTTTTACACGTTGATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTGATGACTAATAAAATGTGGTAGAAATGCCCTCTTTTTTCCTCTGTTTCTCTTTTCCCTCTCAACAGAACCATGTTCCCATACTGTTTTCACTTAAAACACCCTCGCTCTTTCCCCAGATTTTATTGATATGCAAAAGTCAATTTTCGGTTTTGCCTATGCAAATTCGAATAGCCTGATCATTTCTACTATTTTGTTCTTGTGGAGAGTTGTTTCTGAGAGAAGCATCAACGTGTAAAAAGCTATAAT</canonical_amplicon>
		<polymorphic_amplicon>GGTGATGACTAATAAAATGTGGTAGAAATGCCCTCTTTTTTCCTCTGTTTCTCTTTTCCCTCTCAACAGAACCATGTTCCCATACTGTTTTCACTTMAAACACCCTCGCTCTTTCCCCAGATTTTATTGATATGCAAAAGTCAATTTTCGGTTTTGCCTATGCAAATTCGAATAGCCTGATCATTTCTACTATTTTGTTCTTGTGGAGAGTTGTTTCTGAGAGAAGCATCAACGTGTAAAAAGCTATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30184</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>6411</contig_pos>
        <strand>+</strand>
        <context>TTTTCGGTTT[C/T]GCCTATGCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCGCTCTTTCCCCAGATTTTATTGATATGCAAAAGTCAATTTTCGGTTT</left_flank>
        <right_flank>GCCTATGCAAATTCGAATAGCCTGATCATTTCTACTATTTTGTTCTTGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTCATGGTCAGAAAATTCTATTGAAATCCTCCCTATTATATCTTATTTTCAGACTCAGCGTGATGTTTTAAGAAGGTGAAACTGCAAGTATGGAAGATGCCCACAAAATTAATCAAGGAATCTGGATCTGTTCAATAACTTTCATATTACCAAACATTTGGGCCGCAATTCACTAACAATAATCTAGCTGAGATGTTCTTTATCACCTCTAATAATCAGTTTGCACATTATCATACAGCAATCTTACTTTATTTACTCTCCAACTCTTTCATCCTCCTTTTGTCCCATACCCTTCATCTGATTATGCTTAACAGATCACAAGATATTGATCAATTGTTTTTTTTGGTGATGACTAATAAAATGTGGTAGAAATGCCCTCTTTTTTCCTCTGTTTCTCTTTTCCCTCTCAACAGAACCATGTTCCCATACTGTTTTCACTTAAAACACCCTCGCTCTTTCCCCAGATTTTATTGATATGCAAAAGTCAATTTTCGGTTTTGCCTATGCAAATTCGAATAGCCTGATCATTTCTACTATTTTGTTCTTGTGGAGAGTTGTTTCTGAGAGAAGCATCAACGTGTAAAAAGCTATAATGTATATCCCATTTTTTATTCTGAAGAATAAAAAAATATATATAATGATGTTGTACGGTATTCTACCGTGTTTTCTTTTTTAAAATTCTCTTTCCAAGTCTAAAGGAGAGAAATCTCCCCCCGAACACACGTGCAAGAGGTGTGGATTACTGTATCCGCGCGCGAAACTGTGTGCGCGCCAAAACGCGTCTCCTCTCTCGACAAATTCTTATCGTTTTCTTTAGTTTTCGCTGGTGTTCGCTCACGATTGGTGACGACCCGTTAAAGTGTGGCTCACTAGTTTTAAAGGTTTTATAGTGGTTTATTGAGTAAATTCAATAAATAGTGTTTTATAGGAATTCTGTGTTTTAGTGTCTTCTAGTTTTTCAGGTTACAAAGGTCTCTTTGAGTGCATAGAGGTTCTGTG</canonical>
            <polymorphic>CGTCATGGTCAGAAAATTCTATTGAAATCCTCCCTATTATATCTTATTTTCAGACTCAGCGTGATGTTTTAAGAAGGTGAAACTGCAAGTATGGAAGATGCCCACAAAATTAATCAAGGAATCTGGATCTGTTCAATAACTTTCATATTACCAAACATTTGGGCCGCAATTCACTAACAATAATCTAGCTGAGATGTTCTTTATCACCTCTAATAATCAGTTTGCACATTATCATACAGCAATCTTACTTTATTTACTCTCCAACTCTTTCATCCTCCTTTTGTCCCATACCCTTCATCTGATTATGCTTAACAGATCACAAGATATTGATCAATTGTTTTTTTTGGTGATGACTAATAAAATGTGGTAGAAATGCCCTCTTTTTTCCTCTGTTTCTCTTTTCCCTCTCAACAGAACCATGTTCCCATACTGTTTTCACTTAAAACACCCTCGCTCTTTCCCCAGATTTTATTGATATGCAAAAGTCAATTTTCGGTTTYGCCTATGCAAATTCGAATAGCCTGATCATTTCTACTATTTTGTTCTTGTGGAGAGTTGTTTCTGAGAGAAGCATCAACGTGTAAAAAGCTATAATGTATATCCCATTTTTTATTCTGAAGAATAAAAAAATATATATAATGATGTTGTACGGTATTCTACCGTGTTTTCTTTTTTAAAATTCTCTTTCCAAGTCTAAAGGAGAGAAATCTCCCCCCGAACACACGTGCAAGAGGTGTGGATTACTGTATCCGCGCGCGAAACTGTGTGCGCGCCAAAACGCGTCTCCTCTCTCGACAAATTCTTATCGTTTTCTTTAGTTTTCGCTGGTGTTCGCTCACGATTGGTGACGACCCGTTAAAGTGTGGCTCACTAGTTTTAAAGGTTTTATAGTGGTTTATTGAGTAAATTCAATAAATAGTGTTTTATAGGAATTCTGTGTTTTAGTGTCTTCTAGTTTTTCAGGTTACAAAGGTCTCTTTGAGTGCATAGAGGTTCTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGATGACTAATAAAATGTGGT</pcr_primer_p1>
		<pcr_primer_p2>ATTATAGCTTTTTACACGTTGATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTGATGACTAATAAAATGTGGTAGAAATGCCCTCTTTTTTCCTCTGTTTCTCTTTTCCCTCTCAACAGAACCATGTTCCCATACTGTTTTCACTTAAAACACCCTCGCTCTTTCCCCAGATTTTATTGATATGCAAAAGTCAATTTTCGGTTTTGCCTATGCAAATTCGAATAGCCTGATCATTTCTACTATTTTGTTCTTGTGGAGAGTTGTTTCTGAGAGAAGCATCAACGTGTAAAAAGCTATAAT</canonical_amplicon>
		<polymorphic_amplicon>GGTGATGACTAATAAAATGTGGTAGAAATGCCCTCTTTTTTCCTCTGTTTCTCTTTTCCCTCTCAACAGAACCATGTTCCCATACTGTTTTCACTTAAAACACCCTCGCTCTTTCCCCAGATTTTATTGATATGCAAAAGTCAATTTTCGGTTTYGCCTATGCAAATTCGAATAGCCTGATCATTTCTACTATTTTGTTCTTGTGGAGAGTTGTTTCTGAGAGAAGCATCAACGTGTAAAAAGCTATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30185</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>35503</contig_pos>
        <strand>+</strand>
        <context>TATTCTTGTC[A/G]TTTTGTCTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTGCCCAATCCTTCACATTCTCCTCTTTGTCCTTCATTCTATTCTTGTC</left_flank>
        <right_flank>TTTTGTCTTGATCTGTTCTTATTCTCATCAACATGAGAAGCTCGAATTGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTTCTGAATCGTGATAAATCTCAAAAACTGTTAAGCTTAATATTTTCAAAAATACCATCAATTCCATCATTTTTAACTTTTTCTTATCTCTTGTGACCTCTTGAAAAAGTCTAAAAAGTTCAAACAAACACTTGAAAATGGAACGGACGGTTTTTTTTTTGCCTTCTGATCTTCTATCTTGTATGTTATCATCAACCACATACTTTCTTCAAATCCGTTCTGCTTCAAAATTTCAGCATCTCTTATTTCTAAGCCCGTTGTCTGAAAAGAAGTGTCATTTAGAAAACAAGGATGTACGTGGTGTCTTCGCGCGTAGTGTTTGCTCCCCCATCCAGATATACGGGAACAAAAAAAAATGAAAAGAGGGTAGAAAATAATAATAAAACGCTTCTTCTTCTTTGCCACTTGTCATCCTTTCCTCCCTCTTTCGCCGTTTTACAATAACATGTGCCCAATCCTTCACATTCTCCTCTTTGTCCTTCATTCTATTCTTGTCGTTTTGTCTTGATCTGTTCTTATTCTCATCAACATGAGAAGCTCGAATTGGTAATTCTTTTTTGATGATTCTTTGGAAAATTTCTGATAGATGAGTTCCAGTTTGACTAATATGGAAATTGGACACTTCCTAATAGCAAAGTTAAAACCACAGATTCTTATTTCAGATTTCGCTCAATGAGTGACCTTTGCAACGGTTTTGAACCACAAAACTATCTCAAGGAGCGTTGTAAAAAGTGTTTCCGTCCAAAGGTACTTTTTGAAATTCGAGTCTTCGCCGATCAGACAGCTAATATATTGTTCTTCAGGATAAACATGTCGAAGAAGCTACGGTTACACTGTCTGCACTAAAGAAAGAACGGAGGAGGAGTTGGAAAGCTTCAAGTAATTTGGATAATGGAGGACCTGATGACGGTGGGTTGGGTCGTTAGAATTTAGATGGAAAATATATGAATCAGAAGAAAAAATGTAGTTTCCTGGGTTGTTCAAAGTTTTCCGAAGC</canonical>
            <polymorphic>TTTCTTCTGAATCGTGATAAATCTCAAAAACTGTTAAGCTTAATATTTTCAAAAATACCATCAATTCCATCATTTTTAACTTTTTCTTATCTCTTGTGACCTCTTGAAAAAGTCTAAAAAGTTCAAACAAACACTTGAAAATGGAACGGACGGTTTTTTTTTTGCCTTCTGATCTTCTATCTTGTATGTTATCATCAACCACATACTTTCTTCAAATCCGTTCTGCTTCAAAATTTCAGCATCTCTTATTTCTAAGCCCGTTGTCTGAAAAGAAGTGTCATTTAGAAAACAAGGATGTACGTGGTGTCTTCGCGCGTAGTGTTTGCTCCCCCATCCAGATATACGGGAACAAAAAAAAATGAAAAGAGGGTAGAAAATAATAATAAAACGCTTCTTCTTCTTTGCCACTTGTCATCCTTTCCTCCCTCTTTCGCCGTTTTACAATAACATGTGCCCAATCCTTCACATTCTCCTCTTTGTCCTTCATTCTATTCTTGTCRTTTTGTCTTGATCTGTTCTTATTCTCATCAACATGAGAAGCTCGAATTGGTAATTCTTTTTTGATGATTCTTTGGAAAATTTCTGATAGATGAGTTCCAGTTTGACTAATATGGAAATTGGACACTTCCTAATAGCAAAGTTAAAACCACAGATTCTTATTTCAGATTTCGCTCAATGAGTGACCTTTGCAACGGTTTTGAACCACAAAACTATCTCAAGGAGCGTTGTAAAAAGTGTTTCCGTCCAAAGGTACTTTTTGAAATTCGAGTCTTCGCCGATCAGACAGCTAATATATTGTTCTTCAGGATAAACATGTCGAAGAAGCTACGGTTACACTGTCTGCACTAAAGAAAGAACGGAGGAGGAGTTGGAAAGCTTCAAGTAATTTGGATAATGGAGGACCTGATGACGGTGGGTTGGGTCGTTAGAATTTAGATGGAAAATATATGAATCAGAAGAAAAAATGTAGTTTCCTGGGTTGTTCAAAGTTTTCCGAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGAAAAGAGGGTAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAACTGGAACTCATCTATCAGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGAAAAGAGGGTAGAAAATAATAATAAAACGCTTCTTCTTCTTTGCCACTTGTCATCCTTTCCTCCCTCTTTCGCCGTTTTACAATAACATGTGCCCAATCCTTCACATTCTCCTCTTTGTCCTTCATTCTATTCTTGTCGTTTTGTCTTGATCTGTTCTTATTCTCATCAACATGAGAAGCTCGAATTGGTAATTCTTTTTTGATGATTCTTTGGAAAATTTCTGATAGATGAGTTCCAGTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGAAAAGAGGGTAGAAAATAATAATAAAACGCTTCTTCTTCTTTGCCACTTGTCATCCTTTCCTCCCTCTTTCGCCGTTTTACAATAACATGTGCCCAATCCTTCACATTCTCCTCTTTGTCCTTCATTCTATTCTTGTCRTTTTGTCTTGATCTGTTCTTATTCTCATCAACATGAGAAGCTCGAATTGGTAATTCTTTTTTGATGATTCTTTGGAAAATTTCTGATAGATGAGTTCCAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30186</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>35546</contig_pos>
        <strand>+</strand>
        <context>ATGAGAAGCT[C/T]GAATTGGTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTGTCGTTTTGTCTTGATCTGTTCTTATTCTCATCAACATGAGAAGCT</left_flank>
        <right_flank>GAATTGGTAATTCTTTTTTGATGATTCTTTGGAAAATTTCTGATAGATGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTTCAAAAATACCATCAATTCCATCATTTTTAACTTTTTCTTATCTCTTGTGACCTCTTGAAAAAGTCTAAAAAGTTCAAACAAACACTTGAAAATGGAACGGACGGTTTTTTTTTTGCCTTCTGATCTTCTATCTTGTATGTTATCATCAACCACATACTTTCTTCAAATCCGTTCTGCTTCAAAATTTCAGCATCTCTTATTTCTAAGCCCGTTGTCTGAAAAGAAGTGTCATTTAGAAAACAAGGATGTACGTGGTGTCTTCGCGCGTAGTGTTTGCTCCCCCATCCAGATATACGGGAACAAAAAAAAATGAAAAGAGGGTAGAAAATAATAATAAAACGCTTCTTCTTCTTTGCCACTTGTCATCCTTTCCTCCCTCTTTCGCCGTTTTACAATAACATGTGCCCAATCCTTCACATTCTCCTCTTTGTCCTTCATTCTATTCTTGTCGTTTTGTCTTGATCTGTTCTTATTCTCATCAACATGAGAAGCTCGAATTGGTAATTCTTTTTTGATGATTCTTTGGAAAATTTCTGATAGATGAGTTCCAGTTTGACTAATATGGAAATTGGACACTTCCTAATAGCAAAGTTAAAACCACAGATTCTTATTTCAGATTTCGCTCAATGAGTGACCTTTGCAACGGTTTTGAACCACAAAACTATCTCAAGGAGCGTTGTAAAAAGTGTTTCCGTCCAAAGGTACTTTTTGAAATTCGAGTCTTCGCCGATCAGACAGCTAATATATTGTTCTTCAGGATAAACATGTCGAAGAAGCTACGGTTACACTGTCTGCACTAAAGAAAGAACGGAGGAGGAGTTGGAAAGCTTCAAGTAATTTGGATAATGGAGGACCTGATGACGGTGGGTTGGGTCGTTAGAATTTAGATGGAAAATATATGAATCAGAAGAAAAAATGTAGTTTCCTGGGTTGTTCAAAGTTTTCCGAAGCTCATATATCAGAAGTGACAATCTATTCACATTTGAAACTTTTT</canonical>
            <polymorphic>TATTTTCAAAAATACCATCAATTCCATCATTTTTAACTTTTTCTTATCTCTTGTGACCTCTTGAAAAAGTCTAAAAAGTTCAAACAAACACTTGAAAATGGAACGGACGGTTTTTTTTTTGCCTTCTGATCTTCTATCTTGTATGTTATCATCAACCACATACTTTCTTCAAATCCGTTCTGCTTCAAAATTTCAGCATCTCTTATTTCTAAGCCCGTTGTCTGAAAAGAAGTGTCATTTAGAAAACAAGGATGTACGTGGTGTCTTCGCGCGTAGTGTTTGCTCCCCCATCCAGATATACGGGAACAAAAAAAAATGAAAAGAGGGTAGAAAATAATAATAAAACGCTTCTTCTTCTTTGCCACTTGTCATCCTTTCCTCCCTCTTTCGCCGTTTTACAATAACATGTGCCCAATCCTTCACATTCTCCTCTTTGTCCTTCATTCTATTCTTGTCGTTTTGTCTTGATCTGTTCTTATTCTCATCAACATGAGAAGCTYGAATTGGTAATTCTTTTTTGATGATTCTTTGGAAAATTTCTGATAGATGAGTTCCAGTTTGACTAATATGGAAATTGGACACTTCCTAATAGCAAAGTTAAAACCACAGATTCTTATTTCAGATTTCGCTCAATGAGTGACCTTTGCAACGGTTTTGAACCACAAAACTATCTCAAGGAGCGTTGTAAAAAGTGTTTCCGTCCAAAGGTACTTTTTGAAATTCGAGTCTTCGCCGATCAGACAGCTAATATATTGTTCTTCAGGATAAACATGTCGAAGAAGCTACGGTTACACTGTCTGCACTAAAGAAAGAACGGAGGAGGAGTTGGAAAGCTTCAAGTAATTTGGATAATGGAGGACCTGATGACGGTGGGTTGGGTCGTTAGAATTTAGATGGAAAATATATGAATCAGAAGAAAAAATGTAGTTTCCTGGGTTGTTCAAAGTTTTCCGAAGCTCATATATCAGAAGTGACAATCTATTCACATTTGAAACTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 225 223 52</canonical_bands>
                <polymorphic_bands>723 225 52</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGAAAAGAGGGTAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAACTGGAACTCATCTATCAGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGAAAAGAGGGTAGAAAATAATAATAAAACGCTTCTTCTTCTTTGCCACTTGTCATCCTTTCCTCCCTCTTTCGCCGTTTTACAATAACATGTGCCCAATCCTTCACATTCTCCTCTTTGTCCTTCATTCTATTCTTGTCGTTTTGTCTTGATCTGTTCTTATTCTCATCAACATGAGAAGCTCGAATTGGTAATTCTTTTTTGATGATTCTTTGGAAAATTTCTGATAGATGAGTTCCAGTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGAAAAGAGGGTAGAAAATAATAATAAAACGCTTCTTCTTCTTTGCCACTTGTCATCCTTTCCTCCCTCTTTCGCCGTTTTACAATAACATGTGCCCAATCCTTCACATTCTCCTCTTTGTCCTTCATTCTATTCTTGTCGTTTTGTCTTGATCTGTTCTTATTCTCATCAACATGAGAAGCTYGAATTGGTAATTCTTTTTTGATGATTCTTTGGAAAATTTCTGATAGATGAGTTCCAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30187</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>35617</contig_pos>
        <strand>+</strand>
        <context>GACTAATATG[A/G]AAATTGGACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGATTCTTTGGAAAATTTCTGATAGATGAGTTCCAGTTTGACTAATATG</left_flank>
        <right_flank>AAATTGGACACTTCCTAATAGCAAAGTTAAAACCACAGATTCTTATTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAAAGTTCAAACAAACACTTGAAAATGGAACGGACGGTTTTTTTTTTGCCTTCTGATCTTCTATCTTGTATGTTATCATCAACCACATACTTTCTTCAAATCCGTTCTGCTTCAAAATTTCAGCATCTCTTATTTCTAAGCCCGTTGTCTGAAAAGAAGTGTCATTTAGAAAACAAGGATGTACGTGGTGTCTTCGCGCGTAGTGTTTGCTCCCCCATCCAGATATACGGGAACAAAAAAAAATGAAAAGAGGGTAGAAAATAATAATAAAACGCTTCTTCTTCTTTGCCACTTGTCATCCTTTCCTCCCTCTTTCGCCGTTTTACAATAACATGTGCCCAATCCTTCACATTCTCCTCTTTGTCCTTCATTCTATTCTTGTCGTTTTGTCTTGATCTGTTCTTATTCTCATCAACATGAGAAGCTCGAATTGGTAATTCTTTTTTGATGATTCTTTGGAAAATTTCTGATAGATGAGTTCCAGTTTGACTAATATGGAAATTGGACACTTCCTAATAGCAAAGTTAAAACCACAGATTCTTATTTCAGATTTCGCTCAATGAGTGACCTTTGCAACGGTTTTGAACCACAAAACTATCTCAAGGAGCGTTGTAAAAAGTGTTTCCGTCCAAAGGTACTTTTTGAAATTCGAGTCTTCGCCGATCAGACAGCTAATATATTGTTCTTCAGGATAAACATGTCGAAGAAGCTACGGTTACACTGTCTGCACTAAAGAAAGAACGGAGGAGGAGTTGGAAAGCTTCAAGTAATTTGGATAATGGAGGACCTGATGACGGTGGGTTGGGTCGTTAGAATTTAGATGGAAAATATATGAATCAGAAGAAAAAATGTAGTTTCCTGGGTTGTTCAAAGTTTTCCGAAGCTCATATATCAGAAGTGACAATCTATTCACATTTGAAACTTTTTCGGTTGAATATAAAAGGTCGTCAAAAGATTTCAAAATGAGATTTGCACTTTTTGGCCCTTCGATCACTAAC</canonical>
            <polymorphic>TAAAAAGTTCAAACAAACACTTGAAAATGGAACGGACGGTTTTTTTTTTGCCTTCTGATCTTCTATCTTGTATGTTATCATCAACCACATACTTTCTTCAAATCCGTTCTGCTTCAAAATTTCAGCATCTCTTATTTCTAAGCCCGTTGTCTGAAAAGAAGTGTCATTTAGAAAACAAGGATGTACGTGGTGTCTTCGCGCGTAGTGTTTGCTCCCCCATCCAGATATACGGGAACAAAAAAAAATGAAAAGAGGGTAGAAAATAATAATAAAACGCTTCTTCTTCTTTGCCACTTGTCATCCTTTCCTCCCTCTTTCGCCGTTTTACAATAACATGTGCCCAATCCTTCACATTCTCCTCTTTGTCCTTCATTCTATTCTTGTCGTTTTGTCTTGATCTGTTCTTATTCTCATCAACATGAGAAGCTCGAATTGGTAATTCTTTTTTGATGATTCTTTGGAAAATTTCTGATAGATGAGTTCCAGTTTGACTAATATGRAAATTGGACACTTCCTAATAGCAAAGTTAAAACCACAGATTCTTATTTCAGATTTCGCTCAATGAGTGACCTTTGCAACGGTTTTGAACCACAAAACTATCTCAAGGAGCGTTGTAAAAAGTGTTTCCGTCCAAAGGTACTTTTTGAAATTCGAGTCTTCGCCGATCAGACAGCTAATATATTGTTCTTCAGGATAAACATGTCGAAGAAGCTACGGTTACACTGTCTGCACTAAAGAAAGAACGGAGGAGGAGTTGGAAAGCTTCAAGTAATTTGGATAATGGAGGACCTGATGACGGTGGGTTGGGTCGTTAGAATTTAGATGGAAAATATATGAATCAGAAGAAAAAATGTAGTTTCCTGGGTTGTTCAAAGTTTTCCGAAGCTCATATATCAGAAGTGACAATCTATTCACATTTGAAACTTTTTCGGTTGAATATAAAAGGTCGTCAAAAGATTTCAAAATGAGATTTGCACTTTTTGGCCCTTCGATCACTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTCCTTCATTCTATTCTTGTC</pcr_primer_p1>
		<pcr_primer_p2>TTACAACGCTCCTTGAGATAGT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TTGTCCTTCATTCTATTCTTGTCGTTTTGTCTTGATCTGTTCTTATTCTCATCAACATGAGAAGCTCGAATTGGTAATTCTTTTTTGATGATTCTTTGGAAAATTTCTGATAGATGAGTTCCAGTTTGACTAATATGGAAATTGGACACTTCCTAATAGCAAAGTTAAAACCACAGATTCTTATTTCAGATTTCGCTCAATGAGTGACCTTTGCAACGGTTTTGAACCACAAAACTATCTCAAGGAGCGTTGTAA</canonical_amplicon>
		<polymorphic_amplicon>TTGTCCTTCATTCTATTCTTGTCGTTTTGTCTTGATCTGTTCTTATTCTCATCAACATGAGAAGCTCGAATTGGTAATTCTTTTTTGATGATTCTTTGGAAAATTTCTGATAGATGAGTTCCAGTTTGACTAATATGRAAATTGGACACTTCCTAATAGCAAAGTTAAAACCACAGATTCTTATTTCAGATTTCGCTCAATGAGTGACCTTTGCAACGGTTTTGAACCACAAAACTATCTCAAGGAGCGTTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30188</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>35628</contig_pos>
        <strand>+</strand>
        <context>AAATTGGACA[A/C]TTCCTAATAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAAATTTCTGATAGATGAGTTCCAGTTTGACTAATATGGAAATTGGACA</left_flank>
        <right_flank>TTCCTAATAGCAAAGTTAAAACCACAGATTCTTATTTCAGATTTCGCTCA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAAACACTTGAAAATGGAACGGACGGTTTTTTTTTTGCCTTCTGATCTTCTATCTTGTATGTTATCATCAACCACATACTTTCTTCAAATCCGTTCTGCTTCAAAATTTCAGCATCTCTTATTTCTAAGCCCGTTGTCTGAAAAGAAGTGTCATTTAGAAAACAAGGATGTACGTGGTGTCTTCGCGCGTAGTGTTTGCTCCCCCATCCAGATATACGGGAACAAAAAAAAATGAAAAGAGGGTAGAAAATAATAATAAAACGCTTCTTCTTCTTTGCCACTTGTCATCCTTTCCTCCCTCTTTCGCCGTTTTACAATAACATGTGCCCAATCCTTCACATTCTCCTCTTTGTCCTTCATTCTATTCTTGTCGTTTTGTCTTGATCTGTTCTTATTCTCATCAACATGAGAAGCTCGAATTGGTAATTCTTTTTTGATGATTCTTTGGAAAATTTCTGATAGATGAGTTCCAGTTTGACTAATATGGAAATTGGACACTTCCTAATAGCAAAGTTAAAACCACAGATTCTTATTTCAGATTTCGCTCAATGAGTGACCTTTGCAACGGTTTTGAACCACAAAACTATCTCAAGGAGCGTTGTAAAAAGTGTTTCCGTCCAAAGGTACTTTTTGAAATTCGAGTCTTCGCCGATCAGACAGCTAATATATTGTTCTTCAGGATAAACATGTCGAAGAAGCTACGGTTACACTGTCTGCACTAAAGAAAGAACGGAGGAGGAGTTGGAAAGCTTCAAGTAATTTGGATAATGGAGGACCTGATGACGGTGGGTTGGGTCGTTAGAATTTAGATGGAAAATATATGAATCAGAAGAAAAAATGTAGTTTCCTGGGTTGTTCAAAGTTTTCCGAAGCTCATATATCAGAAGTGACAATCTATTCACATTTGAAACTTTTTCGGTTGAATATAAAAGGTCGTCAAAAGATTTCAAAATGAGATTTGCACTTTTTGGCCCTTCGATCACTAACAAAACTATGCT</canonical>
            <polymorphic>AACAAACACTTGAAAATGGAACGGACGGTTTTTTTTTTGCCTTCTGATCTTCTATCTTGTATGTTATCATCAACCACATACTTTCTTCAAATCCGTTCTGCTTCAAAATTTCAGCATCTCTTATTTCTAAGCCCGTTGTCTGAAAAGAAGTGTCATTTAGAAAACAAGGATGTACGTGGTGTCTTCGCGCGTAGTGTTTGCTCCCCCATCCAGATATACGGGAACAAAAAAAAATGAAAAGAGGGTAGAAAATAATAATAAAACGCTTCTTCTTCTTTGCCACTTGTCATCCTTTCCTCCCTCTTTCGCCGTTTTACAATAACATGTGCCCAATCCTTCACATTCTCCTCTTTGTCCTTCATTCTATTCTTGTCGTTTTGTCTTGATCTGTTCTTATTCTCATCAACATGAGAAGCTCGAATTGGTAATTCTTTTTTGATGATTCTTTGGAAAATTTCTGATAGATGAGTTCCAGTTTGACTAATATGGAAATTGGACAMTTCCTAATAGCAAAGTTAAAACCACAGATTCTTATTTCAGATTTCGCTCAATGAGTGACCTTTGCAACGGTTTTGAACCACAAAACTATCTCAAGGAGCGTTGTAAAAAGTGTTTCCGTCCAAAGGTACTTTTTGAAATTCGAGTCTTCGCCGATCAGACAGCTAATATATTGTTCTTCAGGATAAACATGTCGAAGAAGCTACGGTTACACTGTCTGCACTAAAGAAAGAACGGAGGAGGAGTTGGAAAGCTTCAAGTAATTTGGATAATGGAGGACCTGATGACGGTGGGTTGGGTCGTTAGAATTTAGATGGAAAATATATGAATCAGAAGAAAAAATGTAGTTTCCTGGGTTGTTCAAAGTTTTCCGAAGCTCATATATCAGAAGTGACAATCTATTCACATTTGAAACTTTTTCGGTTGAATATAAAAGGTCGTCAAAAGATTTCAAAATGAGATTTGCACTTTTTGGCCCTTCGATCACTAACAAAACTATGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>159 101 99 86 76 70 68 62 46 33 32 26 25 23 19 16 15 12 12 9 8 3</canonical_bands>
                <polymorphic_bands>184 101 99 86 76 70 68 62 46 33 32 26 23 19 16 15 12 12 9 8 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTGGAAAATTTCTGATAGATG</pcr_primer_p1>
		<pcr_primer_p2>ACATGTTTATCCTGAAGAACAATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTTTGGAAAATTTCTGATAGATGAGTTCCAGTTTGACTAATATGGAAATTGGACACTTCCTAATAGCAAAGTTAAAACCACAGATTCTTATTTCAGATTTCGCTCAATGAGTGACCTTTGCAACGGTTTTGAACCACAAAACTATCTCAAGGAGCGTTGTAAAAAGTGTTTCCGTCCAAAGGTACTTTTTGAAATTCGAGTCTTCGCCGATCAGACAGCTAATATATTGTTCTTCAGGATAAACATGT</canonical_amplicon>
		<polymorphic_amplicon>CTTTGGAAAATTTCTGATAGATGAGTTCCAGTTTGACTAATATGGAAATTGGACAMTTCCTAATAGCAAAGTTAAAACCACAGATTCTTATTTCAGATTTCGCTCAATGAGTGACCTTTGCAACGGTTTTGAACCACAAAACTATCTCAAGGAGCGTTGTAAAAAGTGTTTCCGTCCAAAGGTACTTTTTGAAATTCGAGTCTTCGCCGATCAGACAGCTAATATATTGTTCTTCAGGATAAACATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30189</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>35712</contig_pos>
        <strand>+</strand>
        <context>TGAACCACAA[A/C]ACTATCTCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTCAGATTTCGCTCAATGAGTGACCTTTGCAACGGTTTTGAACCACAA</left_flank>
        <right_flank>ACTATCTCAAGGAGCGTTGTAAAAAGTGTTTCCGTCCAAAGGTACTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCAAATCCGTTCTGCTTCAAAATTTCAGCATCTCTTATTTCTAAGCCCGTTGTCTGAAAAGAAGTGTCATTTAGAAAACAAGGATGTACGTGGTGTCTTCGCGCGTAGTGTTTGCTCCCCCATCCAGATATACGGGAACAAAAAAAAATGAAAAGAGGGTAGAAAATAATAATAAAACGCTTCTTCTTCTTTGCCACTTGTCATCCTTTCCTCCCTCTTTCGCCGTTTTACAATAACATGTGCCCAATCCTTCACATTCTCCTCTTTGTCCTTCATTCTATTCTTGTCGTTTTGTCTTGATCTGTTCTTATTCTCATCAACATGAGAAGCTCGAATTGGTAATTCTTTTTTGATGATTCTTTGGAAAATTTCTGATAGATGAGTTCCAGTTTGACTAATATGGAAATTGGACACTTCCTAATAGCAAAGTTAAAACCACAGATTCTTATTTCAGATTTCGCTCAATGAGTGACCTTTGCAACGGTTTTGAACCACAAAACTATCTCAAGGAGCGTTGTAAAAAGTGTTTCCGTCCAAAGGTACTTTTTGAAATTCGAGTCTTCGCCGATCAGACAGCTAATATATTGTTCTTCAGGATAAACATGTCGAAGAAGCTACGGTTACACTGTCTGCACTAAAGAAAGAACGGAGGAGGAGTTGGAAAGCTTCAAGTAATTTGGATAATGGAGGACCTGATGACGGTGGGTTGGGTCGTTAGAATTTAGATGGAAAATATATGAATCAGAAGAAAAAATGTAGTTTCCTGGGTTGTTCAAAGTTTTCCGAAGCTCATATATCAGAAGTGACAATCTATTCACATTTGAAACTTTTTCGGTTGAATATAAAAGGTCGTCAAAAGATTTCAAAATGAGATTTGCACTTTTTGGCCCTTCGATCACTAACAAAACTATGCTTTCATATCCGGTAAAACAAAACATGAATTTTATCACCTAAACTGCAAAGTGCATATCCTCTCACACGTCATCTGTCAGATTCCC</canonical>
            <polymorphic>CTTCAAATCCGTTCTGCTTCAAAATTTCAGCATCTCTTATTTCTAAGCCCGTTGTCTGAAAAGAAGTGTCATTTAGAAAACAAGGATGTACGTGGTGTCTTCGCGCGTAGTGTTTGCTCCCCCATCCAGATATACGGGAACAAAAAAAAATGAAAAGAGGGTAGAAAATAATAATAAAACGCTTCTTCTTCTTTGCCACTTGTCATCCTTTCCTCCCTCTTTCGCCGTTTTACAATAACATGTGCCCAATCCTTCACATTCTCCTCTTTGTCCTTCATTCTATTCTTGTCGTTTTGTCTTGATCTGTTCTTATTCTCATCAACATGAGAAGCTCGAATTGGTAATTCTTTTTTGATGATTCTTTGGAAAATTTCTGATAGATGAGTTCCAGTTTGACTAATATGGAAATTGGACACTTCCTAATAGCAAAGTTAAAACCACAGATTCTTATTTCAGATTTCGCTCAATGAGTGACCTTTGCAACGGTTTTGAACCACAAMACTATCTCAAGGAGCGTTGTAAAAAGTGTTTCCGTCCAAAGGTACTTTTTGAAATTCGAGTCTTCGCCGATCAGACAGCTAATATATTGTTCTTCAGGATAAACATGTCGAAGAAGCTACGGTTACACTGTCTGCACTAAAGAAAGAACGGAGGAGGAGTTGGAAAGCTTCAAGTAATTTGGATAATGGAGGACCTGATGACGGTGGGTTGGGTCGTTAGAATTTAGATGGAAAATATATGAATCAGAAGAAAAAATGTAGTTTCCTGGGTTGTTCAAAGTTTTCCGAAGCTCATATATCAGAAGTGACAATCTATTCACATTTGAAACTTTTTCGGTTGAATATAAAAGGTCGTCAAAAGATTTCAAAATGAGATTTGCACTTTTTGGCCCTTCGATCACTAACAAAACTATGCTTTCATATCCGGTAAAACAAAACATGAATTTTATCACCTAAACTGCAAAGTGCATATCCTCTCACACGTCATCTGTCAGATTCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTGATAGATGAGTTCCAGTT</pcr_primer_p1>
		<pcr_primer_p2>GTAGCTTCTTCGACATGTTTATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCTGATAGATGAGTTCCAGTTTGACTAATATGGAAATTGGACACTTCCTAATAGCAAAGTTAAAACCACAGATTCTTATTTCAGATTTCGCTCAATGAGTGACCTTTGCAACGGTTTTGAACCACAAAACTATCTCAAGGAGCGTTGTAAAAAGTGTTTCCGTCCAAAGGTACTTTTTGAAATTCGAGTCTTCGCCGATCAGACAGCTAATATATTGTTCTTCAGGATAAACATGTCGAAGAAGCTAC</canonical_amplicon>
		<polymorphic_amplicon>TTTCTGATAGATGAGTTCCAGTTTGACTAATATGGAAATTGGACACTTCCTAATAGCAAAGTTAAAACCACAGATTCTTATTTCAGATTTCGCTCAATGAGTGACCTTTGCAACGGTTTTGAACCACAAMACTATCTCAAGGAGCGTTGTAAAAAGTGTTTCCGTCCAAAGGTACTTTTTGAAATTCGAGTCTTCGCCGATCAGACAGCTAATATATTGTTCTTCAGGATAAACATGTCGAAGAAGCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30190</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>65736</contig_pos>
        <strand>-</strand>
        <context>TATTAGGACT[C/T]CAGTAACCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAACCTATGTGTCCCCTGAATCAAGTACCAGTCAAGTTTATTAGGACT</left_flank>
        <right_flank>CAGTAACCAAAAGTCTCTCTGCACACCGCGTCATAATGATAGCACCACCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAATTAGTCTACTGTAAAAATCAAATTCTGGATTTTGTTCAGTATACATTTACAGAAAGACGGAAAAAAACTGCCAGTCTTTTGAATGGGTTCCGATTTCGGTATTTTTCTCAGAAGATTTTTAAAATTAAATTTACTATACTTCTGACTTGTAGTCTTTTTGATAATTCTACATGCTTTAAACACTTTACTAGTGACTTTTCCCTCAAAATTCTGTTTGAGCCAAGTTGACTCGATTCTTGTGAAAGATATCGAAAAGTGGTCAGCTGACAAAATATTTTTGATACTATGATAGACATTTTTTCAACTGACTCCTTTTTGATATATTCTAGAGGAAAGGAGATACAGTGCGCGTCATAATGATAGCACCACCCCATTTTTTGAGGTTTTCACAAAAACTAAAAATTTTTGAGAAAAACGGCTAATGCCATTAGATTCATCACCCCAAAAAACCTATGTGTCCCCTGAATCAAGTACCAGTCAAGTTTATTAGGACTGCAGTAACCAAAAGTCTCTCTGCACACCGCGTCATAATGATAGCACCACCCTGGAAAACGGAAAGTCTCATGTTTTTTTGAGAAATAAATTGCGATATTTTTGTTGGAATTTGTTAAAATAGTCTTAAAACAGTCTGTTTTGACAGTCTGGACAAAAATTGATGTCTCTATCCAAGTTTTAGAAAAATTTATTTTCAGACATTTTCGAACTTTTTTGGGTTTCTGGAATAAATCTTGAGTAACTTTGCTCCTAGGTAACATTTTGAGCTGAATTTCATAGGAAATATTTTTTCAGTGTTCTGAAGTGTCTACTAGTTGTTTTCATGCTATTCTGAGTCGTCGTTTGTAATTTGAGGAAAACCGAAAATTCGAAAACGAACCTCGAATTTCGGGGATACTGATTTTTTTTAAAAAACTGAATTTGTCAAGAAAAAGTTGTTTTTCTGTACGAAATTATAATTTCAAAAGCGATTTTGGTTACTGGCAACATCTTTTGAACGT</canonical>
            <polymorphic>AATAATTAGTCTACTGTAAAAATCAAATTCTGGATTTTGTTCAGTATACATTTACAGAAAGACGGAAAAAAACTGCCAGTCTTTTGAATGGGTTCCGATTTCGGTATTTTTCTCAGAAGATTTTTAAAATTAAATTTACTATACTTCTGACTTGTAGTCTTTTTGATAATTCTACATGCTTTAAACACTTTACTAGTGACTTTTCCCTCAAAATTCTGTTTGAGCCAAGTTGACTCGATTCTTGTGAAAGATATCGAAAAGTGGTCAGCTGACAAAATATTTTTGATACTATGATAGACATTTTTTCAACTGACTCCTTTTTGATATATTCTAGAGGAAAGGAGATACAGTGCGCGTCATAATGATAGCACCACCCCATTTTTTGAGGTTTTCACAAAAACTAAAAATTTTTGAGAAAAACGGCTAATGCCATTAGATTCATCACCCCAAAAAACCTATGTGTCCCCTGAATCAAGTACCAGTCAAGTTTATTAGGACTYCAGTAACCAAAAGTCTCTCTGCACACCGCGTCATAATGATAGCACCACCCTGGAAAACGGAAAGTCTCATGTTTTTTTGAGAAATAAATTGCGATATTTTTGTTGGAATTTGTTAAAATAGTCTTAAAACAGTCTGTTTTGACAGTCTGGACAAAAATTGATGTCTCTATCCAAGTTTTAGAAAAATTTATTTTCAGACATTTTCGAACTTTTTTGGGTTTCTGGAATAAATCTTGAGTAACTTTGCTCCTAGGTAACATTTTGAGCTGAATTTCATAGGAAATATTTTTTCAGTGTTCTGAAGTGTCTACTAGTTGTTTTCATGCTATTCTGAGTCGTCGTTTGTAATTTGAGGAAAACCGAAAATTCGAAAACGAACCTCGAATTTCGGGGATACTGATTTTTTTTAAAAAACTGAATTTGTCAAGAAAAAGTTGTTTTTCTGTACGAAATTATAATTTCAAAAGCGATTTTGGTTACTGGCAACATCTTTTGAACGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTGCAG</site>
                <isoschizomers>
                    <enzyme>BloHII</enzyme>
                    <enzyme>BstMAI</enzyme>
                    <enzyme>PstI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 479 21</canonical_bands>
                <polymorphic_bands>521 479</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGGTTTTCACAAAAACTAAAA</pcr_primer_p1>
		<pcr_primer_p2>GACTATTTTAACAAATTCCAACAA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TGAGGTTTTCACAAAAACTAAAAATTTTTGAGAAAAACGGCTAATGCCATTAGATTCATCACCCCAAAAAACCTATGTGTCCCCTGAATCAAGTACCAGTCAAGTTTATTAGGACTGCAGTAACCAAAAGTCTCTCTGCACACCGCGTCATAATGATAGCACCACCCTGGAAAACGGAAAGTCTCATGTTTTTTTGAGAAATAAATTGCGATATTTTTGTTGGAATTTGTTAAAATAGTC</canonical_amplicon>
		<polymorphic_amplicon>TGAGGTTTTCACAAAAACTAAAAATTTTTGAGAAAAACGGCTAATGCCATTAGATTCATCACCCCAAAAAACCTATGTGTCCCCTGAATCAAGTACCAGTCAAGTTTATTAGGACTYCAGTAACCAAAAGTCTCTCTGCACACCGCGTCATAATGATAGCACCACCCTGGAAAACGGAAAGTCTCATGTTTTTTTGAGAAATAAATTGCGATATTTTTGTTGGAATTTGTTAAAATAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30191</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>65800</contig_pos>
        <strand>-</strand>
        <context>AAAACGGAAA[C/T]TCTCATGTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCTCTGCACACCGCGTCATAATGATAGCACCACCCTGGAAAACGGAAA</left_flank>
        <right_flank>TCTCATGTTTTTTTGAGAAATAAATTGCGATATTTTTGTTGGAATTTGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAAAACTGCCAGTCTTTTGAATGGGTTCCGATTTCGGTATTTTTCTCAGAAGATTTTTAAAATTAAATTTACTATACTTCTGACTTGTAGTCTTTTTGATAATTCTACATGCTTTAAACACTTTACTAGTGACTTTTCCCTCAAAATTCTGTTTGAGCCAAGTTGACTCGATTCTTGTGAAAGATATCGAAAAGTGGTCAGCTGACAAAATATTTTTGATACTATGATAGACATTTTTTCAACTGACTCCTTTTTGATATATTCTAGAGGAAAGGAGATACAGTGCGCGTCATAATGATAGCACCACCCCATTTTTTGAGGTTTTCACAAAAACTAAAAATTTTTGAGAAAAACGGCTAATGCCATTAGATTCATCACCCCAAAAAACCTATGTGTCCCCTGAATCAAGTACCAGTCAAGTTTATTAGGACTGCAGTAACCAAAAGTCTCTCTGCACACCGCGTCATAATGATAGCACCACCCTGGAAAACGGAAAGTCTCATGTTTTTTTGAGAAATAAATTGCGATATTTTTGTTGGAATTTGTTAAAATAGTCTTAAAACAGTCTGTTTTGACAGTCTGGACAAAAATTGATGTCTCTATCCAAGTTTTAGAAAAATTTATTTTCAGACATTTTCGAACTTTTTTGGGTTTCTGGAATAAATCTTGAGTAACTTTGCTCCTAGGTAACATTTTGAGCTGAATTTCATAGGAAATATTTTTTCAGTGTTCTGAAGTGTCTACTAGTTGTTTTCATGCTATTCTGAGTCGTCGTTTGTAATTTGAGGAAAACCGAAAATTCGAAAACGAACCTCGAATTTCGGGGATACTGATTTTTTTTAAAAAACTGAATTTGTCAAGAAAAAGTTGTTTTTCTGTACGAAATTATAATTTCAAAAGCGATTTTGGTTACTGGCAACATCTTTTGAACGTTTTACACTTCTTTGAAAAATTTCATTTTGGCATAATTTTTCAGTTCAAAGCTCGAGCTCAATTA</canonical>
            <polymorphic>GAAAAAAACTGCCAGTCTTTTGAATGGGTTCCGATTTCGGTATTTTTCTCAGAAGATTTTTAAAATTAAATTTACTATACTTCTGACTTGTAGTCTTTTTGATAATTCTACATGCTTTAAACACTTTACTAGTGACTTTTCCCTCAAAATTCTGTTTGAGCCAAGTTGACTCGATTCTTGTGAAAGATATCGAAAAGTGGTCAGCTGACAAAATATTTTTGATACTATGATAGACATTTTTTCAACTGACTCCTTTTTGATATATTCTAGAGGAAAGGAGATACAGTGCGCGTCATAATGATAGCACCACCCCATTTTTTGAGGTTTTCACAAAAACTAAAAATTTTTGAGAAAAACGGCTAATGCCATTAGATTCATCACCCCAAAAAACCTATGTGTCCCCTGAATCAAGTACCAGTCAAGTTTATTAGGACTGCAGTAACCAAAAGTCTCTCTGCACACCGCGTCATAATGATAGCACCACCCTGGAAAACGGAAAYTCTCATGTTTTTTTGAGAAATAAATTGCGATATTTTTGTTGGAATTTGTTAAAATAGTCTTAAAACAGTCTGTTTTGACAGTCTGGACAAAAATTGATGTCTCTATCCAAGTTTTAGAAAAATTTATTTTCAGACATTTTCGAACTTTTTTGGGTTTCTGGAATAAATCTTGAGTAACTTTGCTCCTAGGTAACATTTTGAGCTGAATTTCATAGGAAATATTTTTTCAGTGTTCTGAAGTGTCTACTAGTTGTTTTCATGCTATTCTGAGTCGTCGTTTGTAATTTGAGGAAAACCGAAAATTCGAAAACGAACCTCGAATTTCGGGGATACTGATTTTTTTTAAAAAACTGAATTTGTCAAGAAAAAGTTGTTTTTCTGTACGAAATTATAATTTCAAAAGCGATTTTGGTTACTGGCAACATCTTTTGAACGTTTTACACTTCTTTGAAAAATTTCATTTTGGCATAATTTTTCAGTTCAAAGCTCGAGCTCAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAATCAAGTACCAGTCAAGTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTCGAAAATGTCTGAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTGAATCAAGTACCAGTCAAGTTTATTAGGACTGCAGTAACCAAAAGTCTCTCTGCACACCGCGTCATAATGATAGCACCACCCTGGAAAACGGAAAGTCTCATGTTTTTTTGAGAAATAAATTGCGATATTTTTGTTGGAATTTGTTAAAATAGTCTTAAAACAGTCTGTTTTGACAGTCTGGACAAAAATTGATGTCTCTATCCAAGTTTTAGAAAAATTTATTTTCAGACATTTTCGAACTT</canonical_amplicon>
		<polymorphic_amplicon>CTGAATCAAGTACCAGTCAAGTTTATTAGGACTGCAGTAACCAAAAGTCTCTCTGCACACCGCGTCATAATGATAGCACCACCCTGGAAAACGGAAAYTCTCATGTTTTTTTGAGAAATAAATTGCGATATTTTTGTTGGAATTTGTTAAAATAGTCTTAAAACAGTCTGTTTTGACAGTCTGGACAAAAATTGATGTCTCTATCCAAGTTTTAGAAAAATTTATTTTCAGACATTTTCGAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30192</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>66639</contig_pos>
        <strand></strand>
        <context>TTGGTTACTG[C/T]AGTCCTAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGTGGTGCTATCATTATGACGCGGTGTGCAGAGAGACTTTTGGTTACTG</left_flank>
        <right_flank>AGTCCTAATAAACTTGACTGGTACTTGATTCAGGGGACACATAGGTTTTT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTAAAAAACTGAATTTGTCAAGAAAAAGTTGTTTTTCTGTACGAAATTATAATTTCAAAAGCGATTTTGGTTACTGGCAACATCTTTTGAACGTTTTACACTTCTTTGAAAAATTTCATTTTGGCATAATTTTTCAGTTCAAAGCTCGAGCTCAATTATGAGCTACCAGAGCTCATGAATGTCATGAACAGTTGCAACGTGACTACGAGCATTTTCAAGATATTTCCTATGAATTTCAGCTCAAAATTTTACCTAAAAGCAAAGTCATTCAAGATTTATTCCAGAAACCCAAAAAAGTTCGAAAATGTTTGAAAATAAATTTTTCTAAAACTTGGAAAGAGTATTTTTTTATTTTTTGTCCAGACTGTTTTAAGACTATTTTAACAAATTCCAACAAAAATATCGCAATTTATTTCTCAAAAAAACATGAGACTTTCCGTTTTCCAGGGTGGTGCTATCATTATGACGCGGTGTGCAGAGAGACTTTTGGTTACTGCAGTCCTAATAAACTTGACTGGTACTTGATTCAGGGGACACATAGGTTTTTTGGGGTGCTGAATCTAATGGCATTAGCCGTTTTTCTCCAAAGTTTTTAGTTTTTCTGAAAACCACGAAAAATGGGGTGGTGCTATCATTATGACGCGCACTGTATATGGGCTTAAAGTGGACGGTTTGAAGACATTCTTTTCATTTTTGGAAAAATTTTCTCTAAATGTTTTGGAAGATATAATATTTTTTTCCAAAAAAACTAATTTCTGTTTTCAATTCGAATCTTCCAATTGTTTCCTTCCAATTGTGGTACCTGCACAACACTTTTTTCGAACAATGTCCAATATGTTGGTGATTCACTTTTTTGTCTCTTCCATCTCAAAAAAAGTGGGAAGGTTTTTGTTGTGATGTCTTGTCACTGTTTCCTTGTATGATTTTTTTCCTTCTTTTTCTGTGCTTTCGAATTATACTAGCAGTTGATGTGGAGCCCACTGAAATTCCAGTTGTA</canonical>
            <polymorphic>TTTTTAAAAAACTGAATTTGTCAAGAAAAAGTTGTTTTTCTGTACGAAATTATAATTTCAAAAGCGATTTTGGTTACTGGCAACATCTTTTGAACGTTTTACACTTCTTTGAAAAATTTCATTTTGGCATAATTTTTCAGTTCAAAGCTCGAGCTCAATTATGAGCTACCAGAGCTCATGAATGTCATGAACAGTTGCAACGTGACTACGAGCATTTTCAAGATATTTCCTATGAATTTCAGCTCAAAATTTTACCTAAAAGCAAAGTCATTCAAGATTTATTCCAGAAACCCAAAAAAGTTCGAAAATGTTTGAAAATAAATTTTTCTAAAACTTGGAAAGAGTATTTTTTTATTTTTTGTCCAGACTGTTTTAAGACTATTTTAACAAATTCCAACAAAAATATCGCAATTTATTTCTCAAAAAAACATGAGACTTTCCGTTTTCCAGGGTGGTGCTATCATTATGACGCGGTGTGCAGAGAGACTTTTGGTTACTGYAGTCCTAATAAACTTGACTGGTACTTGATTCAGGGGACACATAGGTTTTTTGGGGTGCTGAATCTAATGGCATTAGCCGTTTTTCTCCAAAGTTTTTAGTTTTTCTGAAAACCACGAAAAATGGGGTGGTGCTATCATTATGACGCGCACTGTATATGGGCTTAAAGTGGACGGTTTGAAGACATTCTTTTCATTTTTGGAAAAATTTTCTCTAAATGTTTTGGAAGATATAATATTTTTTTCCAAAAAAACTAATTTCTGTTTTCAATTCGAATCTTCCAATTGTTTCCTTCCAATTGTGGTACCTGCACAACACTTTTTTCGAACAATGTCCAATATGTTGGTGATTCACTTTTTTGTCTCTTCCATCTCAAAAAAAGTGGGAAGGTTTTTGTTGTGATGTCTTGTCACTGTTTCCTTGTATGATTTTTTTCCTTCTTTTTCTGTGCTTTCGAATTATACTAGCAGTTGATGTGGAGCCCACTGAAATTCCAGTTGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTGCAG</site>
                <isoschizomers>
                    <enzyme>BloHII</enzyme>
                    <enzyme>BstMAI</enzyme>
                    <enzyme>PstI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>309 281 197 192 21</canonical_bands>
                <polymorphic_bands>330 281 197 192</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACATGAGACTTTCCGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CCACTTTAAGCCCATATACAGT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AACATGAGACTTTCCGTTTTCCAGGGTGGTGCTATCATTATGACGCGGTGTGCAGAGAGACTTTTGGTTACTGCAGTCCTAATAAACTTGACTGGTACTTGATTCAGGGGACACATAGGTTTTTTGGGGTGCTGAATCTAATGGCATTAGCCGTTTTTCTCCAAAGTTTTTAGTTTTTCTGAAAACCACGAAAAATGGGGTGGTGCTATCATTATGACGCGCACTGTATATGGGCTTAAAGTGG</canonical_amplicon>
		<polymorphic_amplicon>AACATGAGACTTTCCGTTTTCCAGGGTGGTGCTATCATTATGACGCGGTGTGCAGAGAGACTTTTGGTTACTGYAGTCCTAATAAACTTGACTGGTACTTGATTCAGGGGACACATAGGTTTTTTGGGGTGCTGAATCTAATGGCATTAGCCGTTTTTCTCCAAAGTTTTTAGTTTTTCTGAAAACCACGAAAAATGGGGTGGTGCTATCATTATGACGCGCACTGTATATGGGCTTAAAGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30193</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>66844</contig_pos>
        <strand>+</strand>
        <context>TTTTGGAAAA[A/C]TTTTCTCTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATGGGCTTAAAGTGGACGGTTTGAAGACATTCTTTTCATTTTTGGAAAA</left_flank>
        <right_flank>TTTTCTCTAAATGTTTTGGAAGATATAATATTTTTTTCCAAAAAAACTAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTACGAGCATTTTCAAGATATTTCCTATGAATTTCAGCTCAAAATTTTACCTAAAAGCAAAGTCATTCAAGATTTATTCCAGAAACCCAAAAAAGTTCGAAAATGTTTGAAAATAAATTTTTCTAAAACTTGGAAAGAGTATTTTTTTATTTTTTGTCCAGACTGTTTTAAGACTATTTTAACAAATTCCAACAAAAATATCGCAATTTATTTCTCAAAAAAACATGAGACTTTCCGTTTTCCAGGGTGGTGCTATCATTATGACGCGGTGTGCAGAGAGACTTTTGGTTACTGCAGTCCTAATAAACTTGACTGGTACTTGATTCAGGGGACACATAGGTTTTTTGGGGTGCTGAATCTAATGGCATTAGCCGTTTTTCTCCAAAGTTTTTAGTTTTTCTGAAAACCACGAAAAATGGGGTGGTGCTATCATTATGACGCGCACTGTATATGGGCTTAAAGTGGACGGTTTGAAGACATTCTTTTCATTTTTGGAAAAATTTTCTCTAAATGTTTTGGAAGATATAATATTTTTTTCCAAAAAAACTAATTTCTGTTTTCAATTCGAATCTTCCAATTGTTTCCTTCCAATTGTGGTACCTGCACAACACTTTTTTCGAACAATGTCCAATATGTTGGTGATTCACTTTTTTGTCTCTTCCATCTCAAAAAAAGTGGGAAGGTTTTTGTTGTGATGTCTTGTCACTGTTTCCTTGTATGATTTTTTTCCTTCTTTTTCTGTGCTTTCGAATTATACTAGCAGTTGATGTGGAGCCCACTGAAATTCCAGTTGTATTTGACCTACATCTAAATATATCGATTCAGCTGTGAGTTTTTGTATCTGAATTACTCATAGTTAATTATTTCTTTCAGAAATGAGACTGAATTTTCATTATTCAAATTGAAAGGAGAAACCGTTTCAAGTCCACAAGAGGCGGCTATTAACACAGCGCGAGCAGTTACATGGTTCTCTGACAAAACAGTAATTATCGTTGCTATT</canonical>
            <polymorphic>CTACGAGCATTTTCAAGATATTTCCTATGAATTTCAGCTCAAAATTTTACCTAAAAGCAAAGTCATTCAAGATTTATTCCAGAAACCCAAAAAAGTTCGAAAATGTTTGAAAATAAATTTTTCTAAAACTTGGAAAGAGTATTTTTTTATTTTTTGTCCAGACTGTTTTAAGACTATTTTAACAAATTCCAACAAAAATATCGCAATTTATTTCTCAAAAAAACATGAGACTTTCCGTTTTCCAGGGTGGTGCTATCATTATGACGCGGTGTGCAGAGAGACTTTTGGTTACTGCAGTCCTAATAAACTTGACTGGTACTTGATTCAGGGGACACATAGGTTTTTTGGGGTGCTGAATCTAATGGCATTAGCCGTTTTTCTCCAAAGTTTTTAGTTTTTCTGAAAACCACGAAAAATGGGGTGGTGCTATCATTATGACGCGCACTGTATATGGGCTTAAAGTGGACGGTTTGAAGACATTCTTTTCATTTTTGGAAAAMTTTTCTCTAAATGTTTTGGAAGATATAATATTTTTTTCCAAAAAAACTAATTTCTGTTTTCAATTCGAATCTTCCAATTGTTTCCTTCCAATTGTGGTACCTGCACAACACTTTTTTCGAACAATGTCCAATATGTTGGTGATTCACTTTTTTGTCTCTTCCATCTCAAAAAAAGTGGGAAGGTTTTTGTTGTGATGTCTTGTCACTGTTTCCTTGTATGATTTTTTTCCTTCTTTTTCTGTGCTTTCGAATTATACTAGCAGTTGATGTGGAGCCCACTGAAATTCCAGTTGTATTTGACCTACATCTAAATATATCGATTCAGCTGTGAGTTTTTGTATCTGAATTACTCATAGTTAATTATTTCTTTCAGAAATGAGACTGAATTTTCATTATTCAAATTGAAAGGAGAAACCGTTTCAAGTCCACAAGAGGCGGCTATTAACACAGCGCGAGCAGTTACATGGTTCTCTGACAAAACAGTAATTATCGTTGCTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>314 284 116 102 73 69 29 13</canonical_bands>
                <polymorphic_bands>598 116 102 73 69 29 13</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>294 160 85 73 69 62 50 33 29 26 20 16 15 14 14 14 13 13</canonical_bands>
                <polymorphic_bands>344 160 85 73 69 62 33 29 26 20 16 15 14 14 14 13 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGATTCAGGGGACACATAG</pcr_primer_p1>
		<pcr_primer_p2>TTCGAATTGAAAACAGAAATTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGATTCAGGGGACACATAGGTTTTTTGGGGTGCTGAATCTAATGGCATTAGCCGTTTTTCTCCAAAGTTTTTAGTTTTTCTGAAAACCACGAAAAATGGGGTGGTGCTATCATTATGACGCGCACTGTATATGGGCTTAAAGTGGACGGTTTGAAGACATTCTTTTCATTTTTGGAAAAATTTTCTCTAAATGTTTTGGAAGATATAATATTTTTTTCCAAAAAAACTAATTTCTGTTTTCAATTCGAA</canonical_amplicon>
		<polymorphic_amplicon>TTGATTCAGGGGACACATAGGTTTTTTGGGGTGCTGAATCTAATGGCATTAGCCGTTTTTCTCCAAAGTTTTTAGTTTTTCTGAAAACCACGAAAAATGGGGTGGTGCTATCATTATGACGCGCACTGTATATGGGCTTAAAGTGGACGGTTTGAAGACATTCTTTTCATTTTTGGAAAAMTTTTCTCTAAATGTTTTGGAAGATATAATATTTTTTTCCAAAAAAACTAATTTCTGTTTTCAATTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30194</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>66864</contig_pos>
        <strand>+</strand>
        <context>AATGTTTTGG[A/G]AGATATMATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGAAGACATTCTTTTCATTTTTGGAAAAATTTTCTCTAAATGTTTTGG</left_flank>
        <right_flank>AGATATAATATTTTTTTCCAAAAAAACTAATTTCTGTTTTCAATTCGAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCTATGAATTTCAGCTCAAAATTTTACCTAAAAGCAAAGTCATTCAAGATTTATTCCAGAAACCCAAAAAAGTTCGAAAATGTTTGAAAATAAATTTTTCTAAAACTTGGAAAGAGTATTTTTTTATTTTTTGTCCAGACTGTTTTAAGACTATTTTAACAAATTCCAACAAAAATATCGCAATTTATTTCTCAAAAAAACATGAGACTTTCCGTTTTCCAGGGTGGTGCTATCATTATGACGCGGTGTGCAGAGAGACTTTTGGTTACTGCAGTCCTAATAAACTTGACTGGTACTTGATTCAGGGGACACATAGGTTTTTTGGGGTGCTGAATCTAATGGCATTAGCCGTTTTTCTCCAAAGTTTTTAGTTTTTCTGAAAACCACGAAAAATGGGGTGGTGCTATCATTATGACGCGCACTGTATATGGGCTTAAAGTGGACGGTTTGAAGACATTCTTTTCATTTTTGGAAAAATTTTCTCTAAATGTTTTGGAAGATATAATATTTTTTTCCAAAAAAACTAATTTCTGTTTTCAATTCGAATCTTCCAATTGTTTCCTTCCAATTGTGGTACCTGCACAACACTTTTTTCGAACAATGTCCAATATGTTGGTGATTCACTTTTTTGTCTCTTCCATCTCAAAAAAAGTGGGAAGGTTTTTGTTGTGATGTCTTGTCACTGTTTCCTTGTATGATTTTTTTCCTTCTTTTTCTGTGCTTTCGAATTATACTAGCAGTTGATGTGGAGCCCACTGAAATTCCAGTTGTATTTGACCTACATCTAAATATATCGATTCAGCTGTGAGTTTTTGTATCTGAATTACTCATAGTTAATTATTTCTTTCAGAAATGAGACTGAATTTTCATTATTCAAATTGAAAGGAGAAACCGTTTCAAGTCCACAAGAGGCGGCTATTAACACAGCGCGAGCAGTTACATGGTTCTCTGACAAAACAGTAATTATCGTTGCTATTTGTGTTTTCTTATTTGTAAT</canonical>
            <polymorphic>TTTCCTATGAATTTCAGCTCAAAATTTTACCTAAAAGCAAAGTCATTCAAGATTTATTCCAGAAACCCAAAAAAGTTCGAAAATGTTTGAAAATAAATTTTTCTAAAACTTGGAAAGAGTATTTTTTTATTTTTTGTCCAGACTGTTTTAAGACTATTTTAACAAATTCCAACAAAAATATCGCAATTTATTTCTCAAAAAAACATGAGACTTTCCGTTTTCCAGGGTGGTGCTATCATTATGACGCGGTGTGCAGAGAGACTTTTGGTTACTGCAGTCCTAATAAACTTGACTGGTACTTGATTCAGGGGACACATAGGTTTTTTGGGGTGCTGAATCTAATGGCATTAGCCGTTTTTCTCCAAAGTTTTTAGTTTTTCTGAAAACCACGAAAAATGGGGTGGTGCTATCATTATGACGCGCACTGTATATGGGCTTAAAGTGGACGGTTTGAAGACATTCTTTTCATTTTTGGAAAAATTTTCTCTAAATGTTTTGGRAGATATAATATTTTTTTCCAAAAAAACTAATTTCTGTTTTCAATTCGAATCTTCCAATTGTTTCCTTCCAATTGTGGTACCTGCACAACACTTTTTTCGAACAATGTCCAATATGTTGGTGATTCACTTTTTTGTCTCTTCCATCTCAAAAAAAGTGGGAAGGTTTTTGTTGTGATGTCTTGTCACTGTTTCCTTGTATGATTTTTTTCCTTCTTTTTCTGTGCTTTCGAATTATACTAGCAGTTGATGTGGAGCCCACTGAAATTCCAGTTGTATTTGACCTACATCTAAATATATCGATTCAGCTGTGAGTTTTTGTATCTGAATTACTCATAGTTAATTATTTCTTTCAGAAATGAGACTGAATTTTCATTATTCAAATTGAAAGGAGAAACCGTTTCAAGTCCACAAGAGGCGGCTATTAACACAGCGCGAGCAGTTACATGGTTCTCTGACAAAACAGTAATTATCGTTGCTATTTGTGTTTTCTTATTTGTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGGTTTGAAGACATTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGGAAACAGTGACAAGACATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGGTTTGAAGACATTCTTTTCATTTTTGGAAAAATTTTCTCTAAATGTTTTGGAAGATATAATATTTTTTTCCAAAAAAACTAATTTCTGTTTTCAATTCGAATCTTCCAATTGTTTCCTTCCAATTGTGGTACCTGCACAACACTTTTTTCGAACAATGTCCAATATGTTGGTGATTCACTTTTTTGTCTCTTCCATCTCAAAAAAAGTGGGAAGGTTTTTGTTGTGATGTCTTGTCACTGTTTCCTT</canonical_amplicon>
		<polymorphic_amplicon>ACGGTTTGAAGACATTCTTTTCATTTTTGGAAAAATTTTCTCTAAATGTTTTGGRAGATATAATATTTTTTTCCAAAAAAACTAATTTCTGTTTTCAATTCGAATCTTCCAATTGTTTCCTTCCAATTGTGGTACCTGCACAACACTTTTTTCGAACAATGTCCAATATGTTGGTGATTCACTTTTTTGTCTCTTCCATCTCAAAAAAAGTGGGAAGGTTTTTGTTGTGATGTCTTGTCACTGTTTCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30195</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>66871</contig_pos>
        <strand>+</strand>
        <context>TGGRAGATAT[A/C]ATATTTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACATTCTTTTCATTTTTGGAAAAATTTTCTCTAAATGTTTTGGAAGATAT</left_flank>
        <right_flank>ATATTTTTTTCCAAAAAAACTAATTTCTGTTTTCAATTCGAATCTTCCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAATTTCAGCTCAAAATTTTACCTAAAAGCAAAGTCATTCAAGATTTATTCCAGAAACCCAAAAAAGTTCGAAAATGTTTGAAAATAAATTTTTCTAAAACTTGGAAAGAGTATTTTTTTATTTTTTGTCCAGACTGTTTTAAGACTATTTTAACAAATTCCAACAAAAATATCGCAATTTATTTCTCAAAAAAACATGAGACTTTCCGTTTTCCAGGGTGGTGCTATCATTATGACGCGGTGTGCAGAGAGACTTTTGGTTACTGCAGTCCTAATAAACTTGACTGGTACTTGATTCAGGGGACACATAGGTTTTTTGGGGTGCTGAATCTAATGGCATTAGCCGTTTTTCTCCAAAGTTTTTAGTTTTTCTGAAAACCACGAAAAATGGGGTGGTGCTATCATTATGACGCGCACTGTATATGGGCTTAAAGTGGACGGTTTGAAGACATTCTTTTCATTTTTGGAAAAATTTTCTCTAAATGTTTTGGAAGATATAATATTTTTTTCCAAAAAAACTAATTTCTGTTTTCAATTCGAATCTTCCAATTGTTTCCTTCCAATTGTGGTACCTGCACAACACTTTTTTCGAACAATGTCCAATATGTTGGTGATTCACTTTTTTGTCTCTTCCATCTCAAAAAAAGTGGGAAGGTTTTTGTTGTGATGTCTTGTCACTGTTTCCTTGTATGATTTTTTTCCTTCTTTTTCTGTGCTTTCGAATTATACTAGCAGTTGATGTGGAGCCCACTGAAATTCCAGTTGTATTTGACCTACATCTAAATATATCGATTCAGCTGTGAGTTTTTGTATCTGAATTACTCATAGTTAATTATTTCTTTCAGAAATGAGACTGAATTTTCATTATTCAAATTGAAAGGAGAAACCGTTTCAAGTCCACAAGAGGCGGCTATTAACACAGCGCGAGCAGTTACATGGTTCTCTGACAAAACAGTAATTATCGTTGCTATTTGTGTTTTCTTATTTGTAATTATTTTA</canonical>
            <polymorphic>TGAATTTCAGCTCAAAATTTTACCTAAAAGCAAAGTCATTCAAGATTTATTCCAGAAACCCAAAAAAGTTCGAAAATGTTTGAAAATAAATTTTTCTAAAACTTGGAAAGAGTATTTTTTTATTTTTTGTCCAGACTGTTTTAAGACTATTTTAACAAATTCCAACAAAAATATCGCAATTTATTTCTCAAAAAAACATGAGACTTTCCGTTTTCCAGGGTGGTGCTATCATTATGACGCGGTGTGCAGAGAGACTTTTGGTTACTGCAGTCCTAATAAACTTGACTGGTACTTGATTCAGGGGACACATAGGTTTTTTGGGGTGCTGAATCTAATGGCATTAGCCGTTTTTCTCCAAAGTTTTTAGTTTTTCTGAAAACCACGAAAAATGGGGTGGTGCTATCATTATGACGCGCACTGTATATGGGCTTAAAGTGGACGGTTTGAAGACATTCTTTTCATTTTTGGAAAAATTTTCTCTAAATGTTTTGGAAGATATMATATTTTTTTCCAAAAAAACTAATTTCTGTTTTCAATTCGAATCTTCCAATTGTTTCCTTCCAATTGTGGTACCTGCACAACACTTTTTTCGAACAATGTCCAATATGTTGGTGATTCACTTTTTTGTCTCTTCCATCTCAAAAAAAGTGGGAAGGTTTTTGTTGTGATGTCTTGTCACTGTTTCCTTGTATGATTTTTTTCCTTCTTTTTCTGTGCTTTCGAATTATACTAGCAGTTGATGTGGAGCCCACTGAAATTCCAGTTGTATTTGACCTACATCTAAATATATCGATTCAGCTGTGAGTTTTTGTATCTGAATTACTCATAGTTAATTATTTCTTTCAGAAATGAGACTGAATTTTCATTATTCAAATTGAAAGGAGAAACCGTTTCAAGTCCACAAGAGGCGGCTATTAACACAGCGCGAGCAGTTACATGGTTCTCTGACAAAACAGTAATTATCGTTGCTATTTGTGTTTTCTTATTTGTAATTATTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAGACATTCTTTTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATCATACAAGGAAACAGTGACA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAGACATTCTTTTCATTTTTGGAAAAATTTTCTCTAAATGTTTTGGAAGATATAATATTTTTTTCCAAAAAAACTAATTTCTGTTTTCAATTCGAATCTTCCAATTGTTTCCTTCCAATTGTGGTACCTGCACAACACTTTTTTCGAACAATGTCCAATATGTTGGTGATTCACTTTTTTGTCTCTTCCATCTCAAAAAAAGTGGGAAGGTTTTTGTTGTGATGTCTTGTCACTGTTTCCTTGTATGATT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAGACATTCTTTTCATTTTTGGAAAAATTTTCTCTAAATGTTTTGGAAGATATMATATTTTTTTCCAAAAAAACTAATTTCTGTTTTCAATTCGAATCTTCCAATTGTTTCCTTCCAATTGTGGTACCTGCACAACACTTTTTTCGAACAATGTCCAATATGTTGGTGATTCACTTTTTTGTCTCTTCCATCTCAAAAAAAGTGGGAAGGTTTTTGTTGTGATGTCTTGTCACTGTTTCCTTGTATGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30196</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>68842</contig_pos>
        <strand></strand>
        <context>tcatttcgaa[G/A]tttttgagga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TATCCGGAATGTGTTGAACGAAACTTTTTAGATTTTGGAATCATTTCGAA</left_flank>
        <right_flank>TTTTTGAGGATTTCCGATTTTCGAAACTCGGAATTTTCGGAATTTGAAAA</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAATGGATTCATTATTTGTGGCAGAAGTGGTAGTTGTCCTGAAAGAATGTCCACGTACGGGTTGATCCCGATTGTTGGTGGTGGCAATCGAAGAGCTGAAGGATTGAGAAGAGGATCCATATGTTGTTGTTGGATCTGTAGTTGCTGTAGTTGTGCCAATTGAGAGCGGGGAGACAGAGGTGCTGGTGGTGGGAATTGTTGAATTGGTGGAGTCGGTGCAATAACTGGGACTTGTGGGGGCATTTGGTTCATTGGAGGTGGAAACGGTGGAACGTTTGGCACATACACAATCGGATGACCATTTGATAGCATTCGAACATCAAGATTGTGAGCCATTCTGAGGAACTTAGAAATATTATGTGAAAAGAGGAAAGGTGCAATGAAATATCTAGACCAGATGAAAATTTCAGCAAAGTTATTTTTCAACTGAATCAGCCGGCAAGTGTTTATCCGGAATGTGTTGAACGAAACTTTTTAGATTTTGGAATCATTTCGAAGTTTTTGAGGATTTCCGATTTTCGAAACTCGGAATTTTCGGAATTTGAAAAATTTTAGAGTAATCGAAAGTTTTAATACTTTTGAATTTCATAAATCGAAACTTGGAAAGTATTCAGATTTTCAAATTTCGTGATTTCGGAATTTCGAAATGTTGCGAGTTTTTGAAAATCCGATTTCCGAAAAATTGGAATATTCCGAACATTTCAAATCTCCGAAAACTAGTTTCGGAAATTTAGAATGTTTTGAGTTATCGAGAAAAGAGCATTCGAATATTGGAAAAATTCTGAATTTTCAAAAATCATAATTTTTGAATTTAAAAATGTTTCGGATTTTTTAATTTTTTTAAAATTTGCATTTCGAAATTTCGGAACATCCCGAATATATTCCAAAATAGCTCTTTTGAATGTTCAAACTGTGTGAATTTTCAAAAATTAGTATTTTCAAGTCTTTTGATATTCCGAATTTTCGATAAACAGAGTTTCAAAATTTCTGAATATTCC</canonical>
            <polymorphic>ATGAATGGATTCATTATTTGTGGCAGAAGTGGTAGTTGTCCTGAAAGAATGTCCACGTACGGGTTGATCCCGATTGTTGGTGGTGGCAATCGAAGAGCTGAAGGATTGAGAAGAGGATCCATATGTTGTTGTTGGATCTGTAGTTGCTGTAGTTGTGCCAATTGAGAGCGGGGAGACAGAGGTGCTGGTGGTGGGAATTGTTGAATTGGTGGAGTCGGTGCAATAACTGGGACTTGTGGGGGCATTTGGTTCATTGGAGGTGGAAACGGTGGAACGTTTGGCACATACACAATCGGATGACCATTTGATAGCATTCGAACATCAAGATTGTGAGCCATTCTGAGGAACTTAGAAATATTATGTGAAAAGAGGAAAGGTGCAATGAAATATCTAGACCAGATGAAAATTTCAGCAAAGTTATTTTTCAACTGAATCAGCCGGCAAGTGTTTATCCGGAATGTGTTGAACGAAACTTTTTAGATTTTGGAATCATTTCGAARTTTTTGAGGATTTCCGATTTTCGAAACTCGGAATTTTCGGAATTTGAAAAATTTTAGAGTAATCGAAAGTTTTAATACTTTTGAATTTCATAAATCGAAACTTGGAAAGTATTCAGATTTTCAAATTTCGTGATTTCGGAATTTCGAAATGTTGCGAGTTTTTGAAAATCCGATTTCCGAAAAATTGGAATATTCCGAACATTTCAAATCTCCGAAAACTAGTTTCGGAAATTTAGAATGTTTTGAGTTATCGAGAAAAGAGCATTCGAATATTGGAAAAATTCTGAATTTTCAAAAATCATAATTTTTGAATTTAAAAATGTTTCGGATTTTTTAATTTTTTTAAAATTTGCATTTCGAAATTTCGGAACATCCCGAATATATTCCAAAATAGCTCTTTTGAATGTTCAAACTGTGTGAATTTTCAAAAATTAGTATTTTCAAGTCTTTTGATATTCCGAATTTTCGATAAACAGAGTTTCAAAATTTCTGAATATTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAGCAAAGTTATTTTTCAACT</pcr_primer_p1>
		<pcr_primer_p2>CAATATTCGAATGCTCTTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>368</pcr_amplicon_size>
		<canonical_amplicon>TTCAGCAAAGTTATTTTTCAACTGAATCAGCCGGCAAGTGTTTATCCGGAATGTGTTGAACGAAACTTTTTAGATTTTGGAATCATTTCGAAGTTTTTGAGGATTTCCGATTTTCGAAACTCGGAATTTTCGGAATTTGAAAAATTTTAGAGTAATCGAAAGTTTTAATACTTTTGAATTTCATAAATCGAAACTTGGAAAGTATTCAGATTTTCAAATTTCGTGATTTCGGAATTTCGAAATGTTGCGAGTTTTTGAAAATCCGATTTCCGAAAAATTGGAATATTCCGAACATTTCAAATCTCCGAAAACTAGTTTCGGAAATTTAGAATGTTTTGAGTTATCGAGAAAAGAGCATTCGAATATTG</canonical_amplicon>
		<polymorphic_amplicon>TTCAGCAAAGTTATTTTTCAACTGAATCAGCCGGCAAGTGTTTATCCGGAATGTGTTGAACGAAACTTTTTAGATTTTGGAATCATTTCGAARTTTTTGAGGATTTCCGATTTTCGAAACTCGGAATTTTCGGAATTTGAAAAATTTTAGAGTAATCGAAAGTTTTAATACTTTTGAATTTCATAAATCGAAACTTGGAAAGTATTCAGATTTTCAAATTTCGTGATTTCGGAATTTCGAAATGTTGCGAGTTTTTGAAAATCCGATTTCCGAAAAATTGGAATATTCCGAACATTTCAAATCTCCGAAAACTAGTTTCGGAAATTTAGAATGTTTTGAGTTATCGAGAAAAGAGCATTCGAATATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30197</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>69121</contig_pos>
        <strand>+</strand>
        <context>AATATTGGAA[A/C]AATTCTGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATTTAGAATGTTTTGAGTTATCGAGAAAAGAGCATTCGAATATTGGAA</left_flank>
        <right_flank>AATTCTGAATTTTCAAAAATCATAATTTTTGAATTTAAAAATGTTTCGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCACATACACAATCGGATGACCATTTGATAGCATTCGAACATCAAGATTGTGAGCCATTCTGAGGAACTTAGAAATATTATGTGAAAAGAGGAAAGGTGCAATGAAATATCTAGACCAGATGAAAATTTCAGCAAAGTTATTTTTCAACTGAATCAGCCGGCAAGTGTTTATCCGGAATGTGTTGAACGAAACTTTTTAGATTTTGGAATCATTTCGAAGTTTTTGAGGATTTCCGATTTTCGAAACTCGGAATTTTCGGAATTTGAAAAATTTTAGAGTAATCGAAAGTTTTAATACTTTTGAATTTCATAAATCGAAACTTGGAAAGTATTCAGATTTTCAAATTTCGTGATTTCGGAATTTCGAAATGTTGCGAGTTTTTGAAAATCCGATTTCCGAAAAATTGGAATATTCCGAACATTTCAAATCTCCGAAAACTAGTTTCGGAAATTTAGAATGTTTTGAGTTATCGAGAAAAGAGCATTCGAATATTGGAAAAATTCTGAATTTTCAAAAATCATAATTTTTGAATTTAAAAATGTTTCGGATTTTTTAATTTTTTTAAAATTTGCATTTCGAAATTTCGGAACATCCCGAATATATTCCAAAATAGCTCTTTTGAATGTTCAAACTGTGTGAATTTTCAAAAATTAGTATTTTCAAGTCTTTTGATATTCCGAATTTTCGATAAACAGAGTTTCAAAATTTCTGAATATTCCAAATTATCAAAACTCGGATTTTCGAAATTATTCGGGTTTTCGAAAATCGGGATTTCGTATTGGATTTCCTGAAAAGTCAAAATTTTTGGCAACCCGGAATTTTGAAATATTCCAAATCTCCGAAAATCGAAAATTTCGTATAGTCCGAATTCTCAAAAACAAAATTTCTGAAAATGCTTAATTTTTTAAACTATTGTTATTAAAAGCTTTTTTTCAAGTTTGGTGAATTCTAAAAACCACAGGTCCTTCGAAAAACCAGAACTTTAGAAAATTTGAACT</canonical>
            <polymorphic>GGCACATACACAATCGGATGACCATTTGATAGCATTCGAACATCAAGATTGTGAGCCATTCTGAGGAACTTAGAAATATTATGTGAAAAGAGGAAAGGTGCAATGAAATATCTAGACCAGATGAAAATTTCAGCAAAGTTATTTTTCAACTGAATCAGCCGGCAAGTGTTTATCCGGAATGTGTTGAACGAAACTTTTTAGATTTTGGAATCATTTCGAAGTTTTTGAGGATTTCCGATTTTCGAAACTCGGAATTTTCGGAATTTGAAAAATTTTAGAGTAATCGAAAGTTTTAATACTTTTGAATTTCATAAATCGAAACTTGGAAAGTATTCAGATTTTCAAATTTCGTGATTTCGGAATTTCGAAATGTTGCGAGTTTTTGAAAATCCGATTTCCGAAAAATTGGAATATTCCGAACATTTCAAATCTCCGAAAACTAGTTTCGGAAATTTAGAATGTTTTGAGTTATCGAGAAAAGAGCATTCGAATATTGGAAMAATTCTGAATTTTCAAAAATCATAATTTTTGAATTTAAAAATGTTTCGGATTTTTTAATTTTTTTAAAATTTGCATTTCGAAATTTCGGAACATCCCGAATATATTCCAAAATAGCTCTTTTGAATGTTCAAACTGTGTGAATTTTCAAAAATTAGTATTTTCAAGTCTTTTGATATTCCGAATTTTCGATAAACAGAGTTTCAAAATTTCTGAATATTCCAAATTATCAAAACTCGGATTTTCGAAATTATTCGGGTTTTCGAAAATCGGGATTTCGTATTGGATTTCCTGAAAAGTCAAAATTTTTGGCAACCCGGAATTTTGAAATATTCCAAATCTCCGAAAATCGAAAATTTCGTATAGTCCGAATTCTCAAAAACAAAATTTCTGAAAATGCTTAATTTTTTAAACTATTGTTATTAAAAGCTTTTTTTCAAGTTTGGTGAATTCTAAAAACCACAGGTCCTTCGAAAAACCAGAACTTTAGAAAATTTGAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>127 125 96 90 63 59 50 44 41 40 36 34 34 24 24 17 16 16 15 14 10 9 9 7</canonical_bands>
                <polymorphic_bands>127 125 96 90 63 59 57 44 41 40 36 34 34 24 24 17 16 16 15 14 10 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAGCAAAGTTATTTTTCAACT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTGAAAATTCACACAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>525</pcr_amplicon_size>
		<canonical_amplicon>TTCAGCAAAGTTATTTTTCAACTGAATCAGCCGGCAAGTGTTTATCCGGAATGTGTTGAACGAAACTTTTTAGATTTTGGAATCATTTCGAAGTTTTTGAGGATTTCCGATTTTCGAAACTCGGAATTTTCGGAATTTGAAAAATTTTAGAGTAATCGAAAGTTTTAATACTTTTGAATTTCATAAATCGAAACTTGGAAAGTATTCAGATTTTCAAATTTCGTGATTTCGGAATTTCGAAATGTTGCGAGTTTTTGAAAATCCGATTTCCGAAAAATTGGAATATTCCGAACATTTCAAATCTCCGAAAACTAGTTTCGGAAATTTAGAATGTTTTGAGTTATCGAGAAAAGAGCATTCGAATATTGGAAAAATTCTGAATTTTCAAAAATCATAATTTTTGAATTTAAAAATGTTTCGGATTTTTTAATTTTTTTAAAATTTGCATTTCGAAATTTCGGAACATCCCGAATATATTCCAAAATAGCTCTTTTGAATGTTCAAACTGTGTGAATTTTCAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTCAGCAAAGTTATTTTTCAACTGAATCAGCCGGCAAGTGTTTATCCGGAATGTGTTGAACGAAACTTTTTAGATTTTGGAATCATTTCGAAGTTTTTGAGGATTTCCGATTTTCGAAACTCGGAATTTTCGGAATTTGAAAAATTTTAGAGTAATCGAAAGTTTTAATACTTTTGAATTTCATAAATCGAAACTTGGAAAGTATTCAGATTTTCAAATTTCGTGATTTCGGAATTTCGAAATGTTGCGAGTTTTTGAAAATCCGATTTCCGAAAAATTGGAATATTCCGAACATTTCAAATCTCCGAAAACTAGTTTCGGAAATTTAGAATGTTTTGAGTTATCGAGAAAAGAGCATTCGAATATTGGAAMAATTCTGAATTTTCAAAAATCATAATTTTTGAATTTAAAAATGTTTCGGATTTTTTAATTTTTTTAAAATTTGCATTTCGAAATTTCGGAACATCCCGAATATATTCCAAAATAGCTCTTTTGAATGTTCAAACTGTGTGAATTTTCAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30198</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>69172</contig_pos>
        <strand>+</strand>
        <context>ATGTTTCGGa[A/G]tttttaattt</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTCTGAATTTTCAAAAATCATAATTTTTGAATTTAAAAATGTTTCGGA</left_flank>
        <right_flank>TTTTTAATTTTTTTAAAATTTGCATTTCGAAATTTCGGAACATCCCGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGCCATTCTGAGGAACTTAGAAATATTATGTGAAAAGAGGAAAGGTGCAATGAAATATCTAGACCAGATGAAAATTTCAGCAAAGTTATTTTTCAACTGAATCAGCCGGCAAGTGTTTATCCGGAATGTGTTGAACGAAACTTTTTAGATTTTGGAATCATTTCGAAGTTTTTGAGGATTTCCGATTTTCGAAACTCGGAATTTTCGGAATTTGAAAAATTTTAGAGTAATCGAAAGTTTTAATACTTTTGAATTTCATAAATCGAAACTTGGAAAGTATTCAGATTTTCAAATTTCGTGATTTCGGAATTTCGAAATGTTGCGAGTTTTTGAAAATCCGATTTCCGAAAAATTGGAATATTCCGAACATTTCAAATCTCCGAAAACTAGTTTCGGAAATTTAGAATGTTTTGAGTTATCGAGAAAAGAGCATTCGAATATTGGAAAAATTCTGAATTTTCAAAAATCATAATTTTTGAATTTAAAAATGTTTCGGATTTTTTAATTTTTTTAAAATTTGCATTTCGAAATTTCGGAACATCCCGAATATATTCCAAAATAGCTCTTTTGAATGTTCAAACTGTGTGAATTTTCAAAAATTAGTATTTTCAAGTCTTTTGATATTCCGAATTTTCGATAAACAGAGTTTCAAAATTTCTGAATATTCCAAATTATCAAAACTCGGATTTTCGAAATTATTCGGGTTTTCGAAAATCGGGATTTCGTATTGGATTTCCTGAAAAGTCAAAATTTTTGGCAACCCGGAATTTTGAAATATTCCAAATCTCCGAAAATCGAAAATTTCGTATAGTCCGAATTCTCAAAAACAAAATTTCTGAAAATGCTTAATTTTTTAAACTATTGTTATTAAAAGCTTTTTTTCAAGTTTGGTGAATTCTAAAAACCACAGGTCCTTCGAAAAACCAGAACTTTAGAAAATTTGAACTTCCAAAAAAGTCGCAAAATCCAAATTTTTTTGAGAGAAATTCTAAAAACGA</canonical>
            <polymorphic>TGAGCCATTCTGAGGAACTTAGAAATATTATGTGAAAAGAGGAAAGGTGCAATGAAATATCTAGACCAGATGAAAATTTCAGCAAAGTTATTTTTCAACTGAATCAGCCGGCAAGTGTTTATCCGGAATGTGTTGAACGAAACTTTTTAGATTTTGGAATCATTTCGAAGTTTTTGAGGATTTCCGATTTTCGAAACTCGGAATTTTCGGAATTTGAAAAATTTTAGAGTAATCGAAAGTTTTAATACTTTTGAATTTCATAAATCGAAACTTGGAAAGTATTCAGATTTTCAAATTTCGTGATTTCGGAATTTCGAAATGTTGCGAGTTTTTGAAAATCCGATTTCCGAAAAATTGGAATATTCCGAACATTTCAAATCTCCGAAAACTAGTTTCGGAAATTTAGAATGTTTTGAGTTATCGAGAAAAGAGCATTCGAATATTGGAAAAATTCTGAATTTTCAAAAATCATAATTTTTGAATTTAAAAATGTTTCGGARTTTTTAATTTTTTTAAAATTTGCATTTCGAAATTTCGGAACATCCCGAATATATTCCAAAATAGCTCTTTTGAATGTTCAAACTGTGTGAATTTTCAAAAATTAGTATTTTCAAGTCTTTTGATATTCCGAATTTTCGATAAACAGAGTTTCAAAATTTCTGAATATTCCAAATTATCAAAACTCGGATTTTCGAAATTATTCGGGTTTTCGAAAATCGGGATTTCGTATTGGATTTCCTGAAAAGTCAAAATTTTTGGCAACCCGGAATTTTGAAATATTCCAAATCTCCGAAAATCGAAAATTTCGTATAGTCCGAATTCTCAAAAACAAAATTTCTGAAAATGCTTAATTTTTTAAACTATTGTTATTAAAAGCTTTTTTTCAAGTTTGGTGAATTCTAAAAACCACAGGTCCTTCGAAAAACCAGAACTTTAGAAAATTTGAACTTCCAAAAAAGTCGCAAAATCCAAATTTTTTTGAGAGAAATTCTAAAAACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAGCAAAGTTATTTTTCAACT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTGAAAATTCACACAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>525</pcr_amplicon_size>
		<canonical_amplicon>TTCAGCAAAGTTATTTTTCAACTGAATCAGCCGGCAAGTGTTTATCCGGAATGTGTTGAACGAAACTTTTTAGATTTTGGAATCATTTCGAAGTTTTTGAGGATTTCCGATTTTCGAAACTCGGAATTTTCGGAATTTGAAAAATTTTAGAGTAATCGAAAGTTTTAATACTTTTGAATTTCATAAATCGAAACTTGGAAAGTATTCAGATTTTCAAATTTCGTGATTTCGGAATTTCGAAATGTTGCGAGTTTTTGAAAATCCGATTTCCGAAAAATTGGAATATTCCGAACATTTCAAATCTCCGAAAACTAGTTTCGGAAATTTAGAATGTTTTGAGTTATCGAGAAAAGAGCATTCGAATATTGGAAAAATTCTGAATTTTCAAAAATCATAATTTTTGAATTTAAAAATGTTTCGGATTTTTTAATTTTTTTAAAATTTGCATTTCGAAATTTCGGAACATCCCGAATATATTCCAAAATAGCTCTTTTGAATGTTCAAACTGTGTGAATTTTCAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTCAGCAAAGTTATTTTTCAACTGAATCAGCCGGCAAGTGTTTATCCGGAATGTGTTGAACGAAACTTTTTAGATTTTGGAATCATTTCGAAGTTTTTGAGGATTTCCGATTTTCGAAACTCGGAATTTTCGGAATTTGAAAAATTTTAGAGTAATCGAAAGTTTTAATACTTTTGAATTTCATAAATCGAAACTTGGAAAGTATTCAGATTTTCAAATTTCGTGATTTCGGAATTTCGAAATGTTGCGAGTTTTTGAAAATCCGATTTCCGAAAAATTGGAATATTCCGAACATTTCAAATCTCCGAAAACTAGTTTCGGAAATTTAGAATGTTTTGAGTTATCGAGAAAAGAGCATTCGAATATTGGAAAAATTCTGAATTTTCAAAAATCATAATTTTTGAATTTAAAAATGTTTCGGARTTTTTAATTTTTTTAAAATTTGCATTTCGAAATTTCGGAACATCCCGAATATATTCCAAAATAGCTCTTTTGAATGTTCAAACTGTGTGAATTTTCAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30199</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>69202</contig_pos>
        <strand></strand>
        <context>ttGCATTTCG[A/G]AATTTCGGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATTTAAAAATGTTTCGGATTTTTTAATTTTTTTAAAATTTGCATTTCG</left_flank>
        <right_flank>AATTTCGGAACATCCCGAATATATTCCAAAATAGCTCTTTTGAATGTTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGAAAAGAGGAAAGGTGCAATGAAATATCTAGACCAGATGAAAATTTCAGCAAAGTTATTTTTCAACTGAATCAGCCGGCAAGTGTTTATCCGGAATGTGTTGAACGAAACTTTTTAGATTTTGGAATCATTTCGAAGTTTTTGAGGATTTCCGATTTTCGAAACTCGGAATTTTCGGAATTTGAAAAATTTTAGAGTAATCGAAAGTTTTAATACTTTTGAATTTCATAAATCGAAACTTGGAAAGTATTCAGATTTTCAAATTTCGTGATTTCGGAATTTCGAAATGTTGCGAGTTTTTGAAAATCCGATTTCCGAAAAATTGGAATATTCCGAACATTTCAAATCTCCGAAAACTAGTTTCGGAAATTTAGAATGTTTTGAGTTATCGAGAAAAGAGCATTCGAATATTGGAAAAATTCTGAATTTTCAAAAATCATAATTTTTGAATTTAAAAATGTTTCGGATTTTTTAATTTTTTTAAAATTTGCATTTCGAAATTTCGGAACATCCCGAATATATTCCAAAATAGCTCTTTTGAATGTTCAAACTGTGTGAATTTTCAAAAATTAGTATTTTCAAGTCTTTTGATATTCCGAATTTTCGATAAACAGAGTTTCAAAATTTCTGAATATTCCAAATTATCAAAACTCGGATTTTCGAAATTATTCGGGTTTTCGAAAATCGGGATTTCGTATTGGATTTCCTGAAAAGTCAAAATTTTTGGCAACCCGGAATTTTGAAATATTCCAAATCTCCGAAAATCGAAAATTTCGTATAGTCCGAATTCTCAAAAACAAAATTTCTGAAAATGCTTAATTTTTTAAACTATTGTTATTAAAAGCTTTTTTTCAAGTTTGGTGAATTCTAAAAACCACAGGTCCTTCGAAAAACCAGAACTTTAGAAAATTTGAACTTCCAAAAAAGTCGCAAAATCCAAATTTTTTTGAGAGAAATTCTAAAAACGAAATTCTAAAAACTCATGAAAACCAAAAATT</canonical>
            <polymorphic>TGTGAAAAGAGGAAAGGTGCAATGAAATATCTAGACCAGATGAAAATTTCAGCAAAGTTATTTTTCAACTGAATCAGCCGGCAAGTGTTTATCCGGAATGTGTTGAACGAAACTTTTTAGATTTTGGAATCATTTCGAAGTTTTTGAGGATTTCCGATTTTCGAAACTCGGAATTTTCGGAATTTGAAAAATTTTAGAGTAATCGAAAGTTTTAATACTTTTGAATTTCATAAATCGAAACTTGGAAAGTATTCAGATTTTCAAATTTCGTGATTTCGGAATTTCGAAATGTTGCGAGTTTTTGAAAATCCGATTTCCGAAAAATTGGAATATTCCGAACATTTCAAATCTCCGAAAACTAGTTTCGGAAATTTAGAATGTTTTGAGTTATCGAGAAAAGAGCATTCGAATATTGGAAAAATTCTGAATTTTCAAAAATCATAATTTTTGAATTTAAAAATGTTTCGGATTTTTTAATTTTTTTAAAATTTGCATTTCGRAATTTCGGAACATCCCGAATATATTCCAAAATAGCTCTTTTGAATGTTCAAACTGTGTGAATTTTCAAAAATTAGTATTTTCAAGTCTTTTGATATTCCGAATTTTCGATAAACAGAGTTTCAAAATTTCTGAATATTCCAAATTATCAAAACTCGGATTTTCGAAATTATTCGGGTTTTCGAAAATCGGGATTTCGTATTGGATTTCCTGAAAAGTCAAAATTTTTGGCAACCCGGAATTTTGAAATATTCCAAATCTCCGAAAATCGAAAATTTCGTATAGTCCGAATTCTCAAAAACAAAATTTCTGAAAATGCTTAATTTTTTAAACTATTGTTATTAAAAGCTTTTTTTCAAGTTTGGTGAATTCTAAAAACCACAGGTCCTTCGAAAAACCAGAACTTTAGAAAATTTGAACTTCCAAAAAAGTCGCAAAATCCAAATTTTTTTGAGAGAAATTCTAAAAACGAAATTCTAAAAACTCATGAAAACCAAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>127 96 90 63 59 50 44 44 41 40 36 34 34 32 30 24 24 17 16 16 15 15 14 14 9 9 7</canonical_bands>
                <polymorphic_bands>127 96 90 73 63 50 44 44 41 40 36 34 34 32 30 24 24 17 16 16 15 15 14 9 9 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>208 165 135 123 122 112 91 26 18</canonical_bands>
                <polymorphic_bands>256 208 135 123 122 112 26 18</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>136 121 111 109 107 91 87 56 49 42 32 26 18 15</canonical_bands>
                <polymorphic_bands>200 136 121 111 107 87 56 49 42 32 26 18 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAGCAAAGTTATTTTTCAACT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTGAAAATTCACACAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>525</pcr_amplicon_size>
		<canonical_amplicon>TTCAGCAAAGTTATTTTTCAACTGAATCAGCCGGCAAGTGTTTATCCGGAATGTGTTGAACGAAACTTTTTAGATTTTGGAATCATTTCGAAGTTTTTGAGGATTTCCGATTTTCGAAACTCGGAATTTTCGGAATTTGAAAAATTTTAGAGTAATCGAAAGTTTTAATACTTTTGAATTTCATAAATCGAAACTTGGAAAGTATTCAGATTTTCAAATTTCGTGATTTCGGAATTTCGAAATGTTGCGAGTTTTTGAAAATCCGATTTCCGAAAAATTGGAATATTCCGAACATTTCAAATCTCCGAAAACTAGTTTCGGAAATTTAGAATGTTTTGAGTTATCGAGAAAAGAGCATTCGAATATTGGAAAAATTCTGAATTTTCAAAAATCATAATTTTTGAATTTAAAAATGTTTCGGATTTTTTAATTTTTTTAAAATTTGCATTTCGAAATTTCGGAACATCCCGAATATATTCCAAAATAGCTCTTTTGAATGTTCAAACTGTGTGAATTTTCAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTCAGCAAAGTTATTTTTCAACTGAATCAGCCGGCAAGTGTTTATCCGGAATGTGTTGAACGAAACTTTTTAGATTTTGGAATCATTTCGAAGTTTTTGAGGATTTCCGATTTTCGAAACTCGGAATTTTCGGAATTTGAAAAATTTTAGAGTAATCGAAAGTTTTAATACTTTTGAATTTCATAAATCGAAACTTGGAAAGTATTCAGATTTTCAAATTTCGTGATTTCGGAATTTCGAAATGTTGCGAGTTTTTGAAAATCCGATTTCCGAAAAATTGGAATATTCCGAACATTTCAAATCTCCGAAAACTAGTTTCGGAAATTTAGAATGTTTTGAGTTATCGAGAAAAGAGCATTCGAATATTGGAAAAATTCTGAATTTTCAAAAATCATAATTTTTGAATTTAAAAATGTTTCGGATTTTTTAATTTTTTTAAAATTTGCATTTCGRAATTTCGGAACATCCCGAATATATTCCAAAATAGCTCTTTTGAATGTTCAAACTGTGTGAATTTTCAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30200</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>69240</contig_pos>
        <strand>+</strand>
        <context>AAAATAGCTC[G/T]TTTGAATGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTGCATTTCGAAATTTCGGAACATCCCGAATATATTCCAAAATAGCTC</left_flank>
        <right_flank>TTTGAATGTTCAAACTGTGTGAATTTTCAAAAATTAGTATTTTCAAGTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGAAAATTTCAGCAAAGTTATTTTTCAACTGAATCAGCCGGCAAGTGTTTATCCGGAATGTGTTGAACGAAACTTTTTAGATTTTGGAATCATTTCGAAGTTTTTGAGGATTTCCGATTTTCGAAACTCGGAATTTTCGGAATTTGAAAAATTTTAGAGTAATCGAAAGTTTTAATACTTTTGAATTTCATAAATCGAAACTTGGAAAGTATTCAGATTTTCAAATTTCGTGATTTCGGAATTTCGAAATGTTGCGAGTTTTTGAAAATCCGATTTCCGAAAAATTGGAATATTCCGAACATTTCAAATCTCCGAAAACTAGTTTCGGAAATTTAGAATGTTTTGAGTTATCGAGAAAAGAGCATTCGAATATTGGAAAAATTCTGAATTTTCAAAAATCATAATTTTTGAATTTAAAAATGTTTCGGATTTTTTAATTTTTTTAAAATTTGCATTTCGAAATTTCGGAACATCCCGAATATATTCCAAAATAGCTCTTTTGAATGTTCAAACTGTGTGAATTTTCAAAAATTAGTATTTTCAAGTCTTTTGATATTCCGAATTTTCGATAAACAGAGTTTCAAAATTTCTGAATATTCCAAATTATCAAAACTCGGATTTTCGAAATTATTCGGGTTTTCGAAAATCGGGATTTCGTATTGGATTTCCTGAAAAGTCAAAATTTTTGGCAACCCGGAATTTTGAAATATTCCAAATCTCCGAAAATCGAAAATTTCGTATAGTCCGAATTCTCAAAAACAAAATTTCTGAAAATGCTTAATTTTTTAAACTATTGTTATTAAAAGCTTTTTTTCAAGTTTGGTGAATTCTAAAAACCACAGGTCCTTCGAAAAACCAGAACTTTAGAAAATTTGAACTTCCAAAAAAGTCGCAAAATCCAAATTTTTTTGAGAGAAATTCTAAAAACGAAATTCTAAAAACTCATGAAAACCAAAAATTTTGTGAATGCGTGAAACCAAAACACGGTTTTTCGAAAA</canonical>
            <polymorphic>GATGAAAATTTCAGCAAAGTTATTTTTCAACTGAATCAGCCGGCAAGTGTTTATCCGGAATGTGTTGAACGAAACTTTTTAGATTTTGGAATCATTTCGAAGTTTTTGAGGATTTCCGATTTTCGAAACTCGGAATTTTCGGAATTTGAAAAATTTTAGAGTAATCGAAAGTTTTAATACTTTTGAATTTCATAAATCGAAACTTGGAAAGTATTCAGATTTTCAAATTTCGTGATTTCGGAATTTCGAAATGTTGCGAGTTTTTGAAAATCCGATTTCCGAAAAATTGGAATATTCCGAACATTTCAAATCTCCGAAAACTAGTTTCGGAAATTTAGAATGTTTTGAGTTATCGAGAAAAGAGCATTCGAATATTGGAAAAATTCTGAATTTTCAAAAATCATAATTTTTGAATTTAAAAATGTTTCGGATTTTTTAATTTTTTTAAAATTTGCATTTCGAAATTTCGGAACATCCCGAATATATTCCAAAATAGCTCKTTTGAATGTTCAAACTGTGTGAATTTTCAAAAATTAGTATTTTCAAGTCTTTTGATATTCCGAATTTTCGATAAACAGAGTTTCAAAATTTCTGAATATTCCAAATTATCAAAACTCGGATTTTCGAAATTATTCGGGTTTTCGAAAATCGGGATTTCGTATTGGATTTCCTGAAAAGTCAAAATTTTTGGCAACCCGGAATTTTGAAATATTCCAAATCTCCGAAAATCGAAAATTTCGTATAGTCCGAATTCTCAAAAACAAAATTTCTGAAAATGCTTAATTTTTTAAACTATTGTTATTAAAAGCTTTTTTTCAAGTTTGGTGAATTCTAAAAACCACAGGTCCTTCGAAAAACCAGAACTTTAGAAAATTTGAACTTCCAAAAAAGTCGCAAAATCCAAATTTTTTTGAGAGAAATTCTAAAAACGAAATTCTAAAAACTCATGAAAACCAAAAATTTTGTGAATGCGTGAAACCAAAACACGGTTTTTCGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCAAAGTTATTTTTCAACTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTAGAATTCACCAAACTTGA</pcr_primer_p2>
		<pcr_amplicon_size>827</pcr_amplicon_size>
		<canonical_amplicon>CAGCAAAGTTATTTTTCAACTGAATCAGCCGGCAAGTGTTTATCCGGAATGTGTTGAACGAAACTTTTTAGATTTTGGAATCATTTCGAAGTTTTTGAGGATTTCCGATTTTCGAAACTCGGAATTTTCGGAATTTGAAAAATTTTAGAGTAATCGAAAGTTTTAATACTTTTGAATTTCATAAATCGAAACTTGGAAAGTATTCAGATTTTCAAATTTCGTGATTTCGGAATTTCGAAATGTTGCGAGTTTTTGAAAATCCGATTTCCGAAAAATTGGAATATTCCGAACATTTCAAATCTCCGAAAACTAGTTTCGGAAATTTAGAATGTTTTGAGTTATCGAGAAAAGAGCATTCGAATATTGGAAAAATTCTGAATTTTCAAAAATCATAATTTTTGAATTTAAAAATGTTTCGGATTTTTTAATTTTTTTAAAATTTGCATTTCGAAATTTCGGAACATCCCGAATATATTCCAAAATAGCTCTTTTGAATGTTCAAACTGTGTGAATTTTCAAAAATTAGTATTTTCAAGTCTTTTGATATTCCGAATTTTCGATAAACAGAGTTTCAAAATTTCTGAATATTCCAAATTATCAAAACTCGGATTTTCGAAATTATTCGGGTTTTCGAAAATCGGGATTTCGTATTGGATTTCCTGAAAAGTCAAAATTTTTGGCAACCCGGAATTTTGAAATATTCCAAATCTCCGAAAATCGAAAATTTCGTATAGTCCGAATTCTCAAAAACAAAATTTCTGAAAATGCTTAATTTTTTAAACTATTGTTATTAAAAGCTTTTTTTCAAGTTTGGTGAATTCTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CAGCAAAGTTATTTTTCAACTGAATCAGCCGGCAAGTGTTTATCCGGAATGTGTTGAACGAAACTTTTTAGATTTTGGAATCATTTCGAAGTTTTTGAGGATTTCCGATTTTCGAAACTCGGAATTTTCGGAATTTGAAAAATTTTAGAGTAATCGAAAGTTTTAATACTTTTGAATTTCATAAATCGAAACTTGGAAAGTATTCAGATTTTCAAATTTCGTGATTTCGGAATTTCGAAATGTTGCGAGTTTTTGAAAATCCGATTTCCGAAAAATTGGAATATTCCGAACATTTCAAATCTCCGAAAACTAGTTTCGGAAATTTAGAATGTTTTGAGTTATCGAGAAAAGAGCATTCGAATATTGGAAAAATTCTGAATTTTCAAAAATCATAATTTTTGAATTTAAAAATGTTTCGGATTTTTTAATTTTTTTAAAATTTGCATTTCGAAATTTCGGAACATCCCGAATATATTCCAAAATAGCTCKTTTGAATGTTCAAACTGTGTGAATTTTCAAAAATTAGTATTTTCAAGTCTTTTGATATTCCGAATTTTCGATAAACAGAGTTTCAAAATTTCTGAATATTCCAAATTATCAAAACTCGGATTTTCGAAATTATTCGGGTTTTCGAAAATCGGGATTTCGTATTGGATTTCCTGAAAAGTCAAAATTTTTGGCAACCCGGAATTTTGAAATATTCCAAATCTCCGAAAATCGAAAATTTCGTATAGTCCGAATTCTCAAAAACAAAATTTCTGAAAATGCTTAATTTTTTAAACTATTGTTATTAAAAGCTTTTTTTCAAGTTTGGTGAATTCTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30201</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>69310</contig_pos>
        <strand></strand>
        <context>ccgaattttc[G/A]ataaacagag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGAATTTTCAAAAATTAGTATTTTCAAGTCTTTTGATATTCCGAATTTTC</left_flank>
        <right_flank>ATAAACAGAGTTTCAAAATTTCTGAATATTCCAAATTATCAAAACTCGGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAACTTTTTAGATTTTGGAATCATTTCGAAGTTTTTGAGGATTTCCGATTTTCGAAACTCGGAATTTTCGGAATTTGAAAAATTTTAGAGTAATCGAAAGTTTTAATACTTTTGAATTTCATAAATCGAAACTTGGAAAGTATTCAGATTTTCAAATTTCGTGATTTCGGAATTTCGAAATGTTGCGAGTTTTTGAAAATCCGATTTCCGAAAAATTGGAATATTCCGAACATTTCAAATCTCCGAAAACTAGTTTCGGAAATTTAGAATGTTTTGAGTTATCGAGAAAAGAGCATTCGAATATTGGAAAAATTCTGAATTTTCAAAAATCATAATTTTTGAATTTAAAAATGTTTCGGATTTTTTAATTTTTTTAAAATTTGCATTTCGAAATTTCGGAACATCCCGAATATATTCCAAAATAGCTCTTTTGAATGTTCAAACTGTGTGAATTTTCAAAAATTAGTATTTTCAAGTCTTTTGATATTCCGAATTTTCGATAAACAGAGTTTCAAAATTTCTGAATATTCCAAATTATCAAAACTCGGATTTTCGAAATTATTCGGGTTTTCGAAAATCGGGATTTCGTATTGGATTTCCTGAAAAGTCAAAATTTTTGGCAACCCGGAATTTTGAAATATTCCAAATCTCCGAAAATCGAAAATTTCGTATAGTCCGAATTCTCAAAAACAAAATTTCTGAAAATGCTTAATTTTTTAAACTATTGTTATTAAAAGCTTTTTTTCAAGTTTGGTGAATTCTAAAAACCACAGGTCCTTCGAAAAACCAGAACTTTAGAAAATTTGAACTTCCAAAAAAGTCGCAAAATCCAAATTTTTTTGAGAGAAATTCTAAAAACGAAATTCTAAAAACTCATGAAAACCAAAAATTTTGTGAATGCGTGAAACCAAAACACGGTTTTTCGAAAATTTTATATTTGAATAATCCAATTTCGAAGACAAAAAATTGTTCAACCTGACTGACGAAAAAAAATTGAGG</canonical>
            <polymorphic>GAAACTTTTTAGATTTTGGAATCATTTCGAAGTTTTTGAGGATTTCCGATTTTCGAAACTCGGAATTTTCGGAATTTGAAAAATTTTAGAGTAATCGAAAGTTTTAATACTTTTGAATTTCATAAATCGAAACTTGGAAAGTATTCAGATTTTCAAATTTCGTGATTTCGGAATTTCGAAATGTTGCGAGTTTTTGAAAATCCGATTTCCGAAAAATTGGAATATTCCGAACATTTCAAATCTCCGAAAACTAGTTTCGGAAATTTAGAATGTTTTGAGTTATCGAGAAAAGAGCATTCGAATATTGGAAAAATTCTGAATTTTCAAAAATCATAATTTTTGAATTTAAAAATGTTTCGGATTTTTTAATTTTTTTAAAATTTGCATTTCGAAATTTCGGAACATCCCGAATATATTCCAAAATAGCTCTTTTGAATGTTCAAACTGTGTGAATTTTCAAAAATTAGTATTTTCAAGTCTTTTGATATTCCGAATTTTCRATAAACAGAGTTTCAAAATTTCTGAATATTCCAAATTATCAAAACTCGGATTTTCGAAATTATTCGGGTTTTCGAAAATCGGGATTTCGTATTGGATTTCCTGAAAAGTCAAAATTTTTGGCAACCCGGAATTTTGAAATATTCCAAATCTCCGAAAATCGAAAATTTCGTATAGTCCGAATTCTCAAAAACAAAATTTCTGAAAATGCTTAATTTTTTAAACTATTGTTATTAAAAGCTTTTTTTCAAGTTTGGTGAATTCTAAAAACCACAGGTCCTTCGAAAAACCAGAACTTTAGAAAATTTGAACTTCCAAAAAAGTCGCAAAATCCAAATTTTTTTGAGAGAAATTCTAAAAACGAAATTCTAAAAACTCATGAAAACCAAAAATTTTGTGAATGCGTGAAACCAAAACACGGTTTTTCGAAAATTTTATATTTGAATAATCCAATTTCGAAGACAAAAAATTGTTCAACCTGACTGACGAAAAAAAATTGAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>144 121 109 107 91 87 56 49 45 42 32 30 28 26 18 15</canonical_bands>
                <polymorphic_bands>165 144 121 107 91 87 49 45 42 32 30 28 26 18 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGCAAAGTTATTTTTCAACTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTAGAATTCACCAAACTTGA</pcr_primer_p2>
		<pcr_amplicon_size>827</pcr_amplicon_size>
		<canonical_amplicon>CGATAAACAGAGTTTCAAAATTTCTGAATATTCCAAATTATCAAAACTCGGATTTTCGAAATTATTCGGGTTTTCGAAAATCGGGATTTCGTATTGGATTTCCTGAAAAGTCAAAATTTTTGGCAACCCGGAATTTTGAAATATTCCAAATCTCCGAAAATCGAAAATTTCGTATAGTCCGAATTCTCAAAAACAAAATTTCTGAAAATGCTTAATTTTTTAAACTATTGTTATTAAAAGCTTTTTTTCAAGTTTGGTGAATTCTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CRATAAACAGAGTTTCAAAATTTCTGAATATTCCAAATTATCAAAACTCGGATTTTCGAAATTATTCGGGTTTTCGAAAATCGGGATTTCGTATTGGATTTCCTGAAAAGTCAAAATTTTTGGCAACCCGGAATTTTGAAATATTCCAAATCTCCGAAAATCGAAAATTTCGTATAGTCCGAATTCTCAAAAACAAAATTTCTGAAAATGCTTAATTTTTTAAACTATTGTTATTAAAAGCTTTTTTTCAAGTTTGGTGAATTCTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30202</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>192738</contig_pos>
        <strand></strand>
        <context>AATGGAAAAA[G/A]TGAAGTCTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GCGGGGTCGTTAGGTGGTTTGATGGGAGAGGACTATACAAAATGGAAAAA</left_flank>
        <right_flank>TGAAGTCTTTTAAAATAATAGATTTTGTAGAAAATAGCTTGAAAGGAGTT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGACTAAAGTATAGTTTTAAGCCCTCATGAGATAACTAATCATGGTTGTTTTCTTTTGCTACAACTCAAAACATGGAAAACTTTTGAATGGAAAATTTCAAAACTTTAGAAAATCCTCATAGTTGACCATTAAGACTAACTTATGTTTGCAAGAGGACGCGCATTAGCGAGTTTTCTTGGAAATCAGTCATGTTAATGAAAATTTAAACACGGAGTGCTCCTATTCACTCAAGTGTAAATCTCACCTGCTCATTAATTTGTTTATTTTTTAGACTAGAATTGGAAACACAAATACACTCCCAAAAATTCAAGGAAAAAACTACTCCATAGGAAGAGCGAAGAAATGAGAATTTGGTTGCGTCGAGGATTCTAGAATAAGGTGGAGAGAGCTTCTAGCCACGCCCACAAGTCATCTTAAGGGTAATAAACTGCTCTTTGGAGCGAGGGGCGGGGTCGTTAGGTGGTTTGATGGGAGAGGACTATACAAAATGGAAAAAGTGAAGTCTTTTAAAATAATAGATTTTGTAGAAAATAGCTTGAAAGGAGTTGGAAAAACCGCCTACACATATTAAAAAGAAAAAGAATCTAATTATGATGAGGCGGAAAATATACTTAAACGGAAGTCTCGAAGTACGAGGGGCAGGAAAATGAGTTGTTTGTGTTGGAATTGTTAGAAACACTCTGGAGTCTCAAAAACTGTAGATTTTTGAAATCAAATTTCATATTCTATTTTGCTAATTTAATGGAGGGGAGATATGAAAAAATAATTTTCTCGAATTACCGTTTATTCCTGCTCTTTAAGGAGTTGAACTTGAGAGGGGCAAGTATTGAAGGTGCGACTCTGCTACCGACTGAGCCATAGCTAAAGCCGGCGTCCGCTGGTATACTAAAGGCGGGCACGATGGCTCCACGCAAAGTGACGCTAAGCGTTGTACACCGTTTACCACAAAATGCATATCATTATTCCAAAGAATCTCCGAAAAGTCTCCTGTCCCCCC</canonical>
            <polymorphic>ATTGACTAAAGTATAGTTTTAAGCCCTCATGAGATAACTAATCATGGTTGTTTTCTTTTGCTACAACTCAAAACATGGAAAACTTTTGAATGGAAAATTTCAAAACTTTAGAAAATCCTCATAGTTGACCATTAAGACTAACTTATGTTTGCAAGAGGACGCGCATTAGCGAGTTTTCTTGGAAATCAGTCATGTTAATGAAAATTTAAACACGGAGTGCTCCTATTCACTCAAGTGTAAATCTCACCTGCTCATTAATTTGTTTATTTTTTAGACTAGAATTGGAAACACAAATACACTCCCAAAAATTCAAGGAAAAAACTACTCCATAGGAAGAGCGAAGAAATGAGAATTTGGTTGCGTCGAGGATTCTAGAATAAGGTGGAGAGAGCTTCTAGCCACGCCCACAAGTCATCTTAAGGGTAATAAACTGCTCTTTGGAGCGAGGGGCGGGGTCGTTAGGTGGTTTGATGGGAGAGGACTATACAAAATGGAAAAARTGAAGTCTTTTAAAATAATAGATTTTGTAGAAAATAGCTTGAAAGGAGTTGGAAAAACCGCCTACACATATTAAAAAGAAAAAGAATCTAATTATGATGAGGCGGAAAATATACTTAAACGGAAGTCTCGAAGTACGAGGGGCAGGAAAATGAGTTGTTTGTGTTGGAATTGTTAGAAACACTCTGGAGTCTCAAAAACTGTAGATTTTTGAAATCAAATTTCATATTCTATTTTGCTAATTTAATGGAGGGGAGATATGAAAAAATAATTTTCTCGAATTACCGTTTATTCCTGCTCTTTAAGGAGTTGAACTTGAGAGGGGCAAGTATTGAAGGTGCGACTCTGCTACCGACTGAGCCATAGCTAAAGCCGGCGTCCGCTGGTATACTAAAGGCGGGCACGATGGCTCCACGCAAAGTGACGCTAAGCGTTGTACACCGTTTACCACAAAATGCATATCATTATTCCAAAGAATCTCCGAAAAGTCTCCTGTCCCCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>212 157 97 86 64 63 58 52 44 37 18 17 17 11 10 10 9 9 8 8 7 6</canonical_bands>
                <polymorphic_bands>212 157 101 97 86 63 58 52 44 18 17 17 11 10 10 9 9 8 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTAGAATAAGGTGGAGAGAGC</pcr_primer_p1>
		<pcr_primer_p2>TAAGTATATTTTCCGCCTCATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTCTAGAATAAGGTGGAGAGAGCTTCTAGCCACGCCCACAAGTCATCTTAAGGGTAATAAACTGCTCTTTGGAGCGAGGGGCGGGGTCGTTAGGTGGTTTGATGGGAGAGGACTATACAAAATGGAAAAAGTGAAGTCTTTTAAAATAATAGATTTTGTAGAAAATAGCTTGAAAGGAGTTGGAAAAACCGCCTACACATATTAAAAAGAAAAAGAATCTAATTATGATGAGGCGGAAAATATACTTA</canonical_amplicon>
		<polymorphic_amplicon>TTCTAGAATAAGGTGGAGAGAGCTTCTAGCCACGCCCACAAGTCATCTTAAGGGTAATAAACTGCTCTTTGGAGCGAGGGGCGGGGTCGTTAGGTGGTTTGATGGGAGAGGACTATACAAAATGGAAAAARTGAAGTCTTTTAAAATAATAGATTTTGTAGAAAATAGCTTGAAAGGAGTTGGAAAAACCGCCTACACATATTAAAAAGAAAAAGAATCTAATTATGATGAGGCGGAAAATATACTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30203</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>194083</contig_pos>
        <strand>+</strand>
        <context>GTGATGCGAC[C/G]ATAAAAATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACGCGCTTATCATTCGTGACAAAGTTTTGTTCAGAAACTCGTGATGCGAC</left_flank>
        <right_flank>ATAAAAATGAAATAAAAATGAAGAAGAAAAAAGGAAATTTGATTTTCATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATATAAGTAGGGTTTTCGAAGAGGGTAGAAGTTATATATATACTTTTCTCGTTTTCCACAGCTTTGTACGAATGACATTTCATTTAAAGAAGAGATTCAACCTTTTGTTGAATAAAGCCGTGAGAAATGATATTTCCAGAATCCAAAACTTTCCGACAACTTACTTTTGGAAATCAGTTCGCAGGAAACGGTGTTGGTAGAATAAATTTCAAAACTAATCAAGACGAGTTTCTAGGCCTGAGTTATATATGGACCTTTAGATATGATCTTTCTTCAAATTTCAGGTGAATTGCATGCTCCGCCCACATTCCGTTGCTAGTTTTTTCTCTTTTTTTCAAACCAGCCATATACTTTCTCAGACTAGTGTGAAGAAAAACCAAAAAAATGACTCGCTTTTCTTCAAGTACATAGATTTCGATCTTGACACTTACAGTTCCATGAAAAAAGACGCGCTTATCATTCGTGACAAAGTTTTGTTCAGAAACTCGTGATGCGACAATAAAAATGAAATAAAAATGAAGAAGAAAAAAGGAAATTTGATTTTCATAAAAGGATAAATATAGAGTAAGAGGTGCTTAAATGTGATATTTGGAAACAAGAAAGGCTCTCAATTTTCATAAAATATGACACCCTATTTTGTTGATGACGTTTCCGAGTACTAACCAGACTCTACTTATTTGCGAATTAGTGTTTTACACATTCCCGCCGATTCTTGGATGAAGAAAAATCTGCTTCGAGGGGACATGCTTTTTTTTACTTCATTCACTCGCGCTTTGAGCTCGAATATCTCAATTGCTGTGAGAGATATCAAATATTTCTCAACTGAAAAAATATTGATGATACTGTGATAAACAATTTATCAGTTGACAGATTTTTTCAATTTTTTCAAAAAATCGAGATAATTGAGCTCAAAGTTGACAGTTTGCGTGGGCTTTTCTCAGAGGAGTTACCGTAGCCAAAGTCTGATTTGCGTTTCCGGTTTTTGTGTCACTGTACCG</canonical>
            <polymorphic>TTATATAAGTAGGGTTTTCGAAGAGGGTAGAAGTTATATATATACTTTTCTCGTTTTCCACAGCTTTGTACGAATGACATTTCATTTAAAGAAGAGATTCAACCTTTTGTTGAATAAAGCCGTGAGAAATGATATTTCCAGAATCCAAAACTTTCCGACAACTTACTTTTGGAAATCAGTTCGCAGGAAACGGTGTTGGTAGAATAAATTTCAAAACTAATCAAGACGAGTTTCTAGGCCTGAGTTATATATGGACCTTTAGATATGATCTTTCTTCAAATTTCAGGTGAATTGCATGCTCCGCCCACATTCCGTTGCTAGTTTTTTCTCTTTTTTTCAAACCAGCCATATACTTTCTCAGACTAGTGTGAAGAAAAACCAAAAAAATGACTCGCTTTTCTTCAAGTACATAGATTTCGATCTTGACACTTACAGTTCCATGAAAAAAGACGCGCTTATCATTCGTGACAAAGTTTTGTTCAGAAACTCGTGATGCGACSATAAAAATGAAATAAAAATGAAGAAGAAAAAAGGAAATTTGATTTTCATAAAAGGATAAATATAGAGTAAGAGGTGCTTAAATGTGATATTTGGAAACAAGAAAGGCTCTCAATTTTCATAAAATATGACACCCTATTTTGTTGATGACGTTTCCGAGTACTAACCAGACTCTACTTATTTGCGAATTAGTGTTTTACACATTCCCGCCGATTCTTGGATGAAGAAAAATCTGCTTCGAGGGGACATGCTTTTTTTTACTTCATTCACTCGCGCTTTGAGCTCGAATATCTCAATTGCTGTGAGAGATATCAAATATTTCTCAACTGAAAAAATATTGATGATACTGTGATAAACAATTTATCAGTTGACAGATTTTTTCAATTTTTTCAAAAAATCGAGATAATTGAGCTCAAAGTTGACAGTTTGCGTGGGCTTTTCTCAGAGGAGTTACCGTAGCCAAAGTCTGATTTGCGTTTCCGGTTTTTGTGTCACTGTACCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAACCAGCCATATACTTTCTC</pcr_primer_p1>
		<pcr_primer_p2>TCACATTTAAGCACCTCTTACTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAACCAGCCATATACTTTCTCAGACTAGTGTGAAGAAAAACCAAAAAAATGACTCGCTTTTCTTCAAGTACATAGATTTCGATCTTGACACTTACAGTTCCATGAAAAAAGACGCGCTTATCATTCGTGACAAAGTTTTGTTCAGAAACTCGTGATGCGACAATAAAAATGAAATAAAAATGAAGAAGAAAAAAGGAAATTTGATTTTCATAAAAGGATAAATATAGAGTAAGAGGTGCTTAAATGTGA</canonical_amplicon>
		<polymorphic_amplicon>CAAACCAGCCATATACTTTCTCAGACTAGTGTGAAGAAAAACCAAAAAAATGACTCGCTTTTCTTCAAGTACATAGATTTCGATCTTGACACTTACAGTTCCATGAAAAAAGACGCGCTTATCATTCGTGACAAAGTTTTGTTCAGAAACTCGTGATGCGACSATAAAAATGAAATAAAAATGAAGAAGAAAAAAGGAAATTTGATTTTCATAAAAGGATAAATATAGAGTAAGAGGTGCTTAAATGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30204</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>234020</contig_pos>
        <strand></strand>
        <context>agccgaaaat[C/G]aaatgcaaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTTGACAGCCAAGCTCCAGGTTTCTGAATATAGTCGAAATAGCCGAAAAT</left_flank>
        <right_flank>AAATGCAAATAATGTTTTTGTATATCTAACTGATCGGTACTGTATAAAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAATTATACTAAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTAACACCGGGCCTTCCGGCCGGGCCCGGGCCTTGAAAATTTCCTCAGGCCCGGGCCGGGCTGGAATTTTACAAGTATGAAATAATCTACTATTTTCAGAAGTTTGTAGCTTGGGTGTCAAGTTTCAGATCCCATGAAAAATTTTTGAGGGCTCAAAACAAGCCTAGATTGAAAATTTTGCTTTTACGGAAGTTTTTGACAATTTCTAGTTTTTCATATGATTGCCGATTTCTGAAAGACATTTATTTTTTCCGTTTTGGGTACAAAAACGGGCCAAAAAGGATGTCTTTCAGAAATCGGCAAATAGCTGAAAATCTAGGAATTTTTGAAAATTTGGTAAATGCGAGATATGCATTTCAGGTCTGTTTTGCATTATTCAGTTCTTTTTCAGTGATCGAAAGCTTGACAGCCAAGCTCCAGGTTTCTGAATATAGTCGAAATAGCCGAAAATCAAATGCAAATAATGTTTTTGTATATCTAACTGATCGGTACTGTATAAAAATTTGTTTTTTACACACTTACCGTCGTCATACATTGCTTTGTGCTTTGCTTCCTTCTTCTCTTTTGCTTTCTCGGCATTGATGCGTTCAGCCTGGACCCGCTTAAAAAACTCTGTCCACTTCTCGTCGTCTCTCTTCTCGTAGATCCTGTGGGGATACTGCAAGTGCGCCGCATCGTAGTACGTCTTTTCGTACATACATAACTGCTGAAAGTTTAGAAAACTCAAAAATGTCCTAATAAGTTTCAAACATACCCACGAGTATACTAGTGGCGTCGTAGCGACGACCTTTTCGTCCCCTCGAAGTCTTGGTCTTTGACCATCGGCTGCAATTGAAGAGGTTGAATAATTTTTTAAAAAAATTTTTGTAATATACCTTCGACTTCGACCTGTGGAAGCTTTGGAGCCTTTGACTTCGACTTCTCTTTCTTTTGTTTTTTCGGTTTATATTGT</canonical>
            <polymorphic>AAAAAATTATACTAAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTAACACCGGGCCTTCCGGCCGGGCCCGGGCCTTGAAAATTTCCTCAGGCCCGGGCCGGGCTGGAATTTTACAAGTATGAAATAATCTACTATTTTCAGAAGTTTGTAGCTTGGGTGTCAAGTTTCAGATCCCATGAAAAATTTTTGAGGGCTCAAAACAAGCCTAGATTGAAAATTTTGCTTTTACGGAAGTTTTTGACAATTTCTAGTTTTTCATATGATTGCCGATTTCTGAAAGACATTTATTTTTTCCGTTTTGGGTACAAAAACGGGCCAAAAAGGATGTCTTTCAGAAATCGGCAAATAGCTGAAAATCTAGGAATTTTTGAAAATTTGGTAAATGCGAGATATGCATTTCAGGTCTGTTTTGCATTATTCAGTTCTTTTTCAGTGATCGAAAGCTTGACAGCCAAGCTCCAGGTTTCTGAATATAGTCGAAATAGCCGAAAATSAAATGCAAATAATGTTTTTGTATATCTAACTGATCGGTACTGTATAAAAATTTGTTTTTTACACACTTACCGTCGTCATACATTGCTTTGTGCTTTGCTTCCTTCTTCTCTTTTGCTTTCTCGGCATTGATGCGTTCAGCCTGGACCCGCTTAAAAAACTCTGTCCACTTCTCGTCGTCTCTCTTCTCGTAGATCCTGTGGGGATACTGCAAGTGCGCCGCATCGTAGTACGTCTTTTCGTACATACATAACTGCTGAAAGTTTAGAAAACTCAAAAATGTCCTAATAAGTTTCAAACATACCCACGAGTATACTAGTGGCGTCGTAGCGACGACCTTTTCGTCCCCTCGAAGTCTTGGTCTTTGACCATCGGCTGCAATTGAAGAGGTTGAATAATTTTTTAAAAAAATTTTTGTAATATACCTTCGACTTCGACCTGTGGAAGCTTTGGAGCCTTTGACTTCGACTTCTCTTTCTTTTGTTTTTTCGGTTTATATTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCTGGAATTTTACAAGTATGA</pcr_primer_p1>
		<pcr_primer_p2>ACGACGGTAAGTGTGTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>470</pcr_amplicon_size>
		<canonical_amplicon>GGCTGGAATTTTACAAGTATGAAATAATCTACTATTTTCAGAAGTTTGTAGCTTGGGTGTCAAGTTTCAGATCCCATGAAAAATTTTTGAGGGCTCAAAACAAGCCTAGATTGAAAATTTTGCTTTTACGGAAGTTTTTGACAATTTCTAGTTTTTCATATGATTGCCGATTTCTGAAAGACATTTATTTTTTCCGTTTTGGGTACAAAAACGGGCCAAAAAGGATGTCTTTCAGAAATCGGCAAATAGCTGAAAATCTAGGAATTTTTGAAAATTTGGTAAATGCGAGATATGCATTTCAGGTCTGTTTTGCATTATTCAGTTCTTTTTCAGTGATCGAAAGCTTGACAGCCAAGCTCCAGGTTTCTGAATATAGTCGAAATAGCCGAAAATCAAATGCAAATAATGTTTTTGTATATCTAACTGATCGGTACTGTATAAAAATTTGTTTTTTACACACTTACCGTCGT</canonical_amplicon>
		<polymorphic_amplicon>GGCTGGAATTTTACAAGTATGAAATAATCTACTATTTTCAGAAGTTTGTAGCTTGGGTGTCAAGTTTCAGATCCCATGAAAAATTTTTGAGGGCTCAAAACAAGCCTAGATTGAAAATTTTGCTTTTACGGAAGTTTTTGACAATTTCTAGTTTTTCATATGATTGCCGATTTCTGAAAGACATTTATTTTTTCCGTTTTGGGTACAAAAACGGGCCAAAAAGGATGTCTTTCAGAAATCGGCAAATAGCTGAAAATCTAGGAATTTTTGAAAATTTGGTAAATGCGAGATATGCATTTCAGGTCTGTTTTGCATTATTCAGTTCTTTTTCAGTGATCGAAAGCTTGACAGCCAAGCTCCAGGTTTCTGAATATAGTCGAAATAGCCGAAAATSAAATGCAAATAATGTTTTTGTATATCTAACTGATCGGTACTGTATAAAAATTTGTTTTTTACACACTTACCGTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30205</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>235913</contig_pos>
        <strand>+</strand>
        <context>TCATTAAAAA[A/T]ATTCGCGGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGTTTATGGGATTTTTATTGGCCAATGTAGATTTTATGATCATTAAAAA</left_flank>
        <right_flank>ATTCGCGGGTTACTGTAGAAAATTTTTTTGAAAATATGTAAAATACTAAG</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTACGAAAAATGATTTTTTTTTCTTCTTATTGTGTTTTTTTTTGTAAATTTTACGAATAACAAAAAGAGAGCTCCAATAATTTCATCTAATCAGGCAATGATCGGAGCATGTCACAAGGGACGAAAACAACTAGACAAGAGTGACTGTTTCTAATGATGGAAATTTGGATAACACGACTAATAGGAAAGTATAAAAATCGAAGAAGTCATTCTTTTCAGAATTACTATTTCTGAATCTGTATTCTAATTTTCATACAAAAAAGGTGAGCAGAGCACTAGAAAAAGAAGAAGAATCTCACTATTATTCACCTCTTCCCCTATTGAGATGAATGAGGAGGAATGATAAAAAGGTATGCTACTCGCAATGTACACAATGAGGGAGGGATCCAGGTAGAAGTTCTTACGTTTCATTGCTTGAGATTCTATGAATTTTTAATCATTTATTTGGGTGTTTATGGGATTTTTATTGGCCAATGTAGATTTTATGATCATTAAAAAAATTCGCGGGTTACTGTAGAAAATTTTTTTGAAAATATGTAAAATACTAAGAACGGTCTCCTACTTCCGAAAAATTCAATGAAAGAATACCTTGAAAGCGGCAACAAAAGTTCATCAAGTAAAAACTGGGATTTTATACACATTTTTCGGGTCGCTATCAAACAAACTGATTACATGAATCCCATTCCATTACTTAAAACAAATGTTGAGAAACTGTAGATTGCTAGCAAACAAGCAGTTTTTGATGAGATTGATGAGGTCATTACTAAGGTGGTAATGAAAGTGTGGGAATCTTCAGTCGGTAATTGAGATATTTTCAAGGATGGGATTCACTTGTAAATTTATTGATACCATTATCCTTGTCTGAGAAAAAAGATTGAAGATCTCGTTTACCTTTTTAAGACACAAGAGAAAACTACCGTATTCTTTGAGCCTATTTTAAACTTTTTTTTTTTTTTTCTTTTTTTTTTTCCTTGGTCTACCGATTTTTCGAGGACATTT</canonical>
            <polymorphic>TCTACGAAAAATGATTTTTTTTTCTTCTTATTGTGTTTTTTTTTGTAAATTTTACGAATAACAAAAAGAGAGCTCCAATAATTTCATCTAATCAGGCAATGATCGGAGCATGTCACAAGGGACGAAAACAACTAGACAAGAGTGACTGTTTCTAATGATGGAAATTTGGATAACACGACTAATAGGAAAGTATAAAAATCGAAGAAGTCATTCTTTTCAGAATTACTATTTCTGAATCTGTATTCTAATTTTCATACAAAAAAGGTGAGCAGAGCACTAGAAAAAGAAGAAGAATCTCACTATTATTCACCTCTTCCCCTATTGAGATGAATGAGGAGGAATGATAAAAAGGTATGCTACTCGCAATGTACACAATGAGGGAGGGATCCAGGTAGAAGTTCTTACGTTTCATTGCTTGAGATTCTATGAATTTTTAATCATTTATTTGGGTGTTTATGGGATTTTTATTGGCCAATGTAGATTTTATGATCATTAAAAAWATTCGCGGGTTACTGTAGAAAATTTTTTTGAAAATATGTAAAATACTAAGAACGGTCTCCTACTTCCGAAAAATTCAATGAAAGAATACCTTGAAAGCGGCAACAAAAGTTCATCAAGTAAAAACTGGGATTTTATACACATTTTTCGGGTCGCTATCAAACAAACTGATTACATGAATCCCATTCCATTACTTAAAACAAATGTTGAGAAACTGTAGATTGCTAGCAAACAAGCAGTTTTTGATGAGATTGATGAGGTCATTACTAAGGTGGTAATGAAAGTGTGGGAATCTTCAGTCGGTAATTGAGATATTTTCAAGGATGGGATTCACTTGTAAATTTATTGATACCATTATCCTTGTCTGAGAAAAAAGATTGAAGATCTCGTTTACCTTTTTAAGACACAAGAGAAAACTACCGTATTCTTTGAGCCTATTTTAAACTTTTTTTTTTTTTTTCTTTTTTTTTTTCCTTGGTCTACCGATTTTTCGAGGACATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>266 266 163 115 71 51 47 21</canonical_bands>
                <polymorphic_bands>266 266 163 115 92 51 47</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>231 182 163 83 71 58 51 47 35 32 26 21</canonical_bands>
                <polymorphic_bands>231 182 163 92 83 58 51 47 35 32 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTAATCATTTATTTGGGTGTT</pcr_primer_p1>
		<pcr_primer_p2>GGATTCATGTAATCAGTTTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTAATCATTTATTTGGGTGTTTATGGGATTTTTATTGGCCAATGTAGATTTTATGATCATTAAAAAAATTCGCGGGTTACTGTAGAAAATTTTTTTGAAAATATGTAAAATACTAAGAACGGTCTCCTACTTCCGAAAAATTCAATGAAAGAATACCTTGAAAGCGGCAACAAAAGTTCATCAAGTAAAAACTGGGATTTTATACACATTTTTCGGGTCGCTATCAAACAAACTGATTACATGAATCC</canonical_amplicon>
		<polymorphic_amplicon>TTTTAATCATTTATTTGGGTGTTTATGGGATTTTTATTGGCCAATGTAGATTTTATGATCATTAAAAAWATTCGCGGGTTACTGTAGAAAATTTTTTTGAAAATATGTAAAATACTAAGAACGGTCTCCTACTTCCGAAAAATTCAATGAAAGAATACCTTGAAAGCGGCAACAAAAGTTCATCAAGTAAAAACTGGGATTTTATACACATTTTTCGGGTCGCTATCAAACAAACTGATTACATGAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30206</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>236177</contig_pos>
        <strand>+</strand>
        <context>TGAGGTCATT[A/G]CTAAGGTGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTAGATTGCTAGCAAACAAGCAGTTTTTGATGAGATTGATGAGGTCATT</left_flank>
        <right_flank>CTAAGGTGGTAATGAAAGTGTGGGAATCTTCAGTCGGTAATTGAGATATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGAGCAGAGCACTAGAAAAAGAAGAAGAATCTCACTATTATTCACCTCTTCCCCTATTGAGATGAATGAGGAGGAATGATAAAAAGGTATGCTACTCGCAATGTACACAATGAGGGAGGGATCCAGGTAGAAGTTCTTACGTTTCATTGCTTGAGATTCTATGAATTTTTAATCATTTATTTGGGTGTTTATGGGATTTTTATTGGCCAATGTAGATTTTATGATCATTAAAAAAATTCGCGGGTTACTGTAGAAAATTTTTTTGAAAATATGTAAAATACTAAGAACGGTCTCCTACTTCCGAAAAATTCAATGAAAGAATACCTTGAAAGCGGCAACAAAAGTTCATCAAGTAAAAACTGGGATTTTATACACATTTTTCGGGTCGCTATCAAACAAACTGATTACATGAATCCCATTCCATTACTTAAAACAAATGTTGAGAAACTGTAGATTGCTAGCAAACAAGCAGTTTTTGATGAGATTGATGAGGTCATTACTAAGGTGGTAATGAAAGTGTGGGAATCTTCAGTCGGTAATTGAGATATTTTCAAGGATGGGATTCACTTGTAAATTTATTGATACCATTATCCTTGTCTGAGAAAAAAGATTGAAGATCTCGTTTACCTTTTTAAGACACAAGAGAAAACTACCGTATTCTTTGAGCCTATTTTAAACTTTTTTTTTTTTTTTCTTTTTTTTTTTCCTTGGTCTACCGATTTTTCGAGGACATTTTATTTTTAAAATGTAAACCTGAAAAAATCCAATTGTGAAAATCATTGAAAAAAAGAATAACGACCGTCAAAAACTTGAGCAAATAGAAAATAATATTTAAAATAGATTCAAAAATACGGTTTTGCTCTTGATACCAAAAATTTGAATATTTAAATTTTTGAAATTCATGAAATTTTGAGAATAAATATAAGTAAAAAAGTTTCTGATTAAATTTGGAGGTCTTGATGAACTGAAATTTCAATAGGGTTCCGGAATATTCCAAAT</canonical>
            <polymorphic>GTGAGCAGAGCACTAGAAAAAGAAGAAGAATCTCACTATTATTCACCTCTTCCCCTATTGAGATGAATGAGGAGGAATGATAAAAAGGTATGCTACTCGCAATGTACACAATGAGGGAGGGATCCAGGTAGAAGTTCTTACGTTTCATTGCTTGAGATTCTATGAATTTTTAATCATTTATTTGGGTGTTTATGGGATTTTTATTGGCCAATGTAGATTTTATGATCATTAAAAAAATTCGCGGGTTACTGTAGAAAATTTTTTTGAAAATATGTAAAATACTAAGAACGGTCTCCTACTTCCGAAAAATTCAATGAAAGAATACCTTGAAAGCGGCAACAAAAGTTCATCAAGTAAAAACTGGGATTTTATACACATTTTTCGGGTCGCTATCAAACAAACTGATTACATGAATCCCATTCCATTACTTAAAACAAATGTTGAGAAACTGTAGATTGCTAGCAAACAAGCAGTTTTTGATGAGATTGATGAGGTCATTRCTAAGGTGGTAATGAAAGTGTGGGAATCTTCAGTCGGTAATTGAGATATTTTCAAGGATGGGATTCACTTGTAAATTTATTGATACCATTATCCTTGTCTGAGAAAAAAGATTGAAGATCTCGTTTACCTTTTTAAGACACAAGAGAAAACTACCGTATTCTTTGAGCCTATTTTAAACTTTTTTTTTTTTTTTCTTTTTTTTTTTCCTTGGTCTACCGATTTTTCGAGGACATTTTATTTTTAAAATGTAAACCTGAAAAAATCCAATTGTGAAAATCATTGAAAAAAAGAATAACGACCGTCAAAAACTTGAGCAAATAGAAAATAATATTTAAAATAGATTCAAAAATACGGTTTTGCTCTTGATACCAAAAATTTGAATATTTAAATTTTTGAAATTCATGAAATTTTGAGAATAAATATAAGTAAAAAAGTTTCTGATTAAATTTGGAGGTCTTGATGAACTGAAATTTCAATAGGGTTCCGGAATATTCCAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCCCATTCCATTACTTAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GAATACGGTAGTTTTCTCTTGTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATCCCATTCCATTACTTAAAACAAATGTTGAGAAACTGTAGATTGCTAGCAAACAAGCAGTTTTTGATGAGATTGATGAGGTCATTACTAAGGTGGTAATGAAAGTGTGGGAATCTTCAGTCGGTAATTGAGATATTTTCAAGGATGGGATTCACTTGTAAATTTATTGATACCATTATCCTTGTCTGAGAAAAAAGATTGAAGATCTCGTTTACCTTTTTAAGACACAAGAGAAAACTACCGTATTC</canonical_amplicon>
		<polymorphic_amplicon>AATCCCATTCCATTACTTAAAACAAATGTTGAGAAACTGTAGATTGCTAGCAAACAAGCAGTTTTTGATGAGATTGATGAGGTCATTRCTAAGGTGGTAATGAAAGTGTGGGAATCTTCAGTCGGTAATTGAGATATTTTCAAGGATGGGATTCACTTGTAAATTTATTGATACCATTATCCTTGTCTGAGAAAAAAGATTGAAGATCTCGTTTACCTTTTTAAGACACAAGAGAAAACTACCGTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30207</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>236357</contig_pos>
        <strand></strand>
        <context>TATTTTAAAC[T/A]tttttttttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTTTAAGACACAAGAGAAAACTACCGTATTCTTTGAGCCTATTTTAAAC</left_flank>
        <right_flank>TTTTTTTTTTTTTTCTTTTTTTTTTTCCTTGGTCTACCGATTTTTCGAGG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGGTGTTTATGGGATTTTTATTGGCCAATGTAGATTTTATGATCATTAAAAAAATTCGCGGGTTACTGTAGAAAATTTTTTTGAAAATATGTAAAATACTAAGAACGGTCTCCTACTTCCGAAAAATTCAATGAAAGAATACCTTGAAAGCGGCAACAAAAGTTCATCAAGTAAAAACTGGGATTTTATACACATTTTTCGGGTCGCTATCAAACAAACTGATTACATGAATCCCATTCCATTACTTAAAACAAATGTTGAGAAACTGTAGATTGCTAGCAAACAAGCAGTTTTTGATGAGATTGATGAGGTCATTACTAAGGTGGTAATGAAAGTGTGGGAATCTTCAGTCGGTAATTGAGATATTTTCAAGGATGGGATTCACTTGTAAATTTATTGATACCATTATCCTTGTCTGAGAAAAAAGATTGAAGATCTCGTTTACCTTTTTAAGACACAAGAGAAAACTACCGTATTCTTTGAGCCTATTTTAAACTTTTTTTTTTTTTTTCTTTTTTTTTTTCCTTGGTCTACCGATTTTTCGAGGACATTTTATTTTTAAAATGTAAACCTGAAAAAATCCAATTGTGAAAATCATTGAAAAAAAGAATAACGACCGTCAAAAACTTGAGCAAATAGAAAATAATATTTAAAATAGATTCAAAAATACGGTTTTGCTCTTGATACCAAAAATTTGAATATTTAAATTTTTGAAATTCATGAAATTTTGAGAATAAATATAAGTAAAAAAGTTTCTGATTAAATTTGGAGGTCTTGATGAACTGAAATTTCAATAGGGTTCCGGAATATTCCAAATACATGAAGTAAACCATTCCTTTTCTTTCTTAAGACTCATTTTGGTTCCTGTTCCTAAGACCAAAACTTTGACTTTGTGAAATTGAGTTGTGGTGTCCGTTTGAAGTCTCACAGTTTTTAATTCCTTTGGAGGGTTCCAGGAAAAACCCTCCAGAAAAAAACCCTCCAAATCGAGAGGGGT</canonical>
            <polymorphic>TTTGGGTGTTTATGGGATTTTTATTGGCCAATGTAGATTTTATGATCATTAAAAAAATTCGCGGGTTACTGTAGAAAATTTTTTTGAAAATATGTAAAATACTAAGAACGGTCTCCTACTTCCGAAAAATTCAATGAAAGAATACCTTGAAAGCGGCAACAAAAGTTCATCAAGTAAAAACTGGGATTTTATACACATTTTTCGGGTCGCTATCAAACAAACTGATTACATGAATCCCATTCCATTACTTAAAACAAATGTTGAGAAACTGTAGATTGCTAGCAAACAAGCAGTTTTTGATGAGATTGATGAGGTCATTACTAAGGTGGTAATGAAAGTGTGGGAATCTTCAGTCGGTAATTGAGATATTTTCAAGGATGGGATTCACTTGTAAATTTATTGATACCATTATCCTTGTCTGAGAAAAAAGATTGAAGATCTCGTTTACCTTTTTAAGACACAAGAGAAAACTACCGTATTCTTTGAGCCTATTTTAAACWTTTTTTTTTTTTTTCTTTTTTTTTTTCCTTGGTCTACCGATTTTTCGAGGACATTTTATTTTTAAAATGTAAACCTGAAAAAATCCAATTGTGAAAATCATTGAAAAAAAGAATAACGACCGTCAAAAACTTGAGCAAATAGAAAATAATATTTAAAATAGATTCAAAAATACGGTTTTGCTCTTGATACCAAAAATTTGAATATTTAAATTTTTGAAATTCATGAAATTTTGAGAATAAATATAAGTAAAAAAGTTTCTGATTAAATTTGGAGGTCTTGATGAACTGAAATTTCAATAGGGTTCCGGAATATTCCAAATACATGAAGTAAACCATTCCTTTTCTTTCTTAAGACTCATTTTGGTTCCTGTTCCTAAGACCAAAACTTTGACTTTGTGAAATTGAGTTGTGGTGTCCGTTTGAAGTCTCACAGTTTTTAATTCCTTTGGAGGGTTCCAGGAAAAACCCTCCAGAAAAAAACCCTCCAAATCGAGAGGGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGAAGATCTCGTTTACCTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAAAACCGTATTTTTGAATCTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTGAAGATCTCGTTTACCTTTTTAAGACACAAGAGAAAACTACCGTATTCTTTGAGCCTATTTTAAACTTTTTTTTTTTTTTTCTTTTTTTTTTTCCTTGGTCTACCGATTTTTCGAGGACATTTTATTTTTAAAATGTAAACCTGAAAAAATCCAATTGTGAAAATCATTGAAAAAAAGAATAACGACCGTCAAAAACTTGAGCAAATAGAAAATAATATTTAAAATAGATTCAAAAATACGGTTTTG</canonical_amplicon>
		<polymorphic_amplicon>ATTGAAGATCTCGTTTACCTTTTTAAGACACAAGAGAAAACTACCGTATTCTTTGAGCCTATTTTAAACWTTTTTTTTTTTTTTCTTTTTTTTTTTCCTTGGTCTACCGATTTTTCGAGGACATTTTATTTTTAAAATGTAAACCTGAAAAAATCCAATTGTGAAAATCATTGAAAAAAAGAATAACGACCGTCAAAAACTTGAGCAAATAGAAAATAATATTTAAAATAGATTCAAAAATACGGTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30208</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>236413</contig_pos>
        <strand>+</strand>
        <context>CGAGGACATT[C/T]TATTTTTAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTTTTCTTTTTTTTTTTCCTTGGTCTACCGATTTTTCGAGGACATT</left_flank>
        <right_flank>TATTTTTAAAATGTAAACCTGAAAAAATCCAATTGTGAAAATCATTGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCGCGGGTTACTGTAGAAAATTTTTTTGAAAATATGTAAAATACTAAGAACGGTCTCCTACTTCCGAAAAATTCAATGAAAGAATACCTTGAAAGCGGCAACAAAAGTTCATCAAGTAAAAACTGGGATTTTATACACATTTTTCGGGTCGCTATCAAACAAACTGATTACATGAATCCCATTCCATTACTTAAAACAAATGTTGAGAAACTGTAGATTGCTAGCAAACAAGCAGTTTTTGATGAGATTGATGAGGTCATTACTAAGGTGGTAATGAAAGTGTGGGAATCTTCAGTCGGTAATTGAGATATTTTCAAGGATGGGATTCACTTGTAAATTTATTGATACCATTATCCTTGTCTGAGAAAAAAGATTGAAGATCTCGTTTACCTTTTTAAGACACAAGAGAAAACTACCGTATTCTTTGAGCCTATTTTAAACTTTTTTTTTTTTTTTCTTTTTTTTTTTCCTTGGTCTACCGATTTTTCGAGGACATTTTATTTTTAAAATGTAAACCTGAAAAAATCCAATTGTGAAAATCATTGAAAAAAAGAATAACGACCGTCAAAAACTTGAGCAAATAGAAAATAATATTTAAAATAGATTCAAAAATACGGTTTTGCTCTTGATACCAAAAATTTGAATATTTAAATTTTTGAAATTCATGAAATTTTGAGAATAAATATAAGTAAAAAAGTTTCTGATTAAATTTGGAGGTCTTGATGAACTGAAATTTCAATAGGGTTCCGGAATATTCCAAATACATGAAGTAAACCATTCCTTTTCTTTCTTAAGACTCATTTTGGTTCCTGTTCCTAAGACCAAAACTTTGACTTTGTGAAATTGAGTTGTGGTGTCCGTTTGAAGTCTCACAGTTTTTAATTCCTTTGGAGGGTTCCAGGAAAAACCCTCCAGAAAAAAACCCTCCAAATCGAGAGGGGTCCTATCCTTATTAAACGCACGTATTGTCAAAATTTTTAAAATTTCCCGTAGATTTC</canonical>
            <polymorphic>ATTCGCGGGTTACTGTAGAAAATTTTTTTGAAAATATGTAAAATACTAAGAACGGTCTCCTACTTCCGAAAAATTCAATGAAAGAATACCTTGAAAGCGGCAACAAAAGTTCATCAAGTAAAAACTGGGATTTTATACACATTTTTCGGGTCGCTATCAAACAAACTGATTACATGAATCCCATTCCATTACTTAAAACAAATGTTGAGAAACTGTAGATTGCTAGCAAACAAGCAGTTTTTGATGAGATTGATGAGGTCATTACTAAGGTGGTAATGAAAGTGTGGGAATCTTCAGTCGGTAATTGAGATATTTTCAAGGATGGGATTCACTTGTAAATTTATTGATACCATTATCCTTGTCTGAGAAAAAAGATTGAAGATCTCGTTTACCTTTTTAAGACACAAGAGAAAACTACCGTATTCTTTGAGCCTATTTTAAACTTTTTTTTTTTTTTTCTTTTTTTTTTTCCTTGGTCTACCGATTTTTCGAGGACATTYTATTTTTAAAATGTAAACCTGAAAAAATCCAATTGTGAAAATCATTGAAAAAAAGAATAACGACCGTCAAAAACTTGAGCAAATAGAAAATAATATTTAAAATAGATTCAAAAATACGGTTTTGCTCTTGATACCAAAAATTTGAATATTTAAATTTTTGAAATTCATGAAATTTTGAGAATAAATATAAGTAAAAAAGTTTCTGATTAAATTTGGAGGTCTTGATGAACTGAAATTTCAATAGGGTTCCGGAATATTCCAAATACATGAAGTAAACCATTCCTTTTCTTTCTTAAGACTCATTTTGGTTCCTGTTCCTAAGACCAAAACTTTGACTTTGTGAAATTGAGTTGTGGTGTCCGTTTGAAGTCTCACAGTTTTTAATTCCTTTGGAGGGTTCCAGGAAAAACCCTCCAGAAAAAAACCCTCCAAATCGAGAGGGGTCCTATCCTTATTAAACGCACGTATTGTCAAAATTTTTAAAATTTCCCGTAGATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGAAGATCTCGTTTACCTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAAAACCGTATTTTTGAATCTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTGAAGATCTCGTTTACCTTTTTAAGACACAAGAGAAAACTACCGTATTCTTTGAGCCTATTTTAAACTTTTTTTTTTTTTTTCTTTTTTTTTTTCCTTGGTCTACCGATTTTTCGAGGACATTTTATTTTTAAAATGTAAACCTGAAAAAATCCAATTGTGAAAATCATTGAAAAAAAGAATAACGACCGTCAAAAACTTGAGCAAATAGAAAATAATATTTAAAATAGATTCAAAAATACGGTTTTG</canonical_amplicon>
		<polymorphic_amplicon>ATTGAAGATCTCGTTTACCTTTTTAAGACACAAGAGAAAACTACCGTATTCTTTGAGCCTATTTTAAACTTTTTTTTTTTTTTTCTTTTTTTTTTTCCTTGGTCTACCGATTTTTCGAGGACATTYTATTTTTAAAATGTAAACCTGAAAAAATCCAATTGTGAAAATCATTGAAAAAAAGAATAACGACCGTCAAAAACTTGAGCAAATAGAAAATAATATTTAAAATAGATTCAAAAATACGGTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30209</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>236572</contig_pos>
        <strand>+</strand>
        <context>TTTAAATTTT[G/T]RAAATYCATG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAAAAATACGGTTTTGCTCTTGATACCAAAAATTTGAATATTTAAATTTT</left_flank>
        <right_flank>GAAATTCATGAAATTTTGAGAATAAATATAAGTAAAAAAGTTTCTGATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAAACTGATTACATGAATCCCATTCCATTACTTAAAACAAATGTTGAGAAACTGTAGATTGCTAGCAAACAAGCAGTTTTTGATGAGATTGATGAGGTCATTACTAAGGTGGTAATGAAAGTGTGGGAATCTTCAGTCGGTAATTGAGATATTTTCAAGGATGGGATTCACTTGTAAATTTATTGATACCATTATCCTTGTCTGAGAAAAAAGATTGAAGATCTCGTTTACCTTTTTAAGACACAAGAGAAAACTACCGTATTCTTTGAGCCTATTTTAAACTTTTTTTTTTTTTTTCTTTTTTTTTTTCCTTGGTCTACCGATTTTTCGAGGACATTTTATTTTTAAAATGTAAACCTGAAAAAATCCAATTGTGAAAATCATTGAAAAAAAGAATAACGACCGTCAAAAACTTGAGCAAATAGAAAATAATATTTAAAATAGATTCAAAAATACGGTTTTGCTCTTGATACCAAAAATTTGAATATTTAAATTTTTGAAATTCATGAAATTTTGAGAATAAATATAAGTAAAAAAGTTTCTGATTAAATTTGGAGGTCTTGATGAACTGAAATTTCAATAGGGTTCCGGAATATTCCAAATACATGAAGTAAACCATTCCTTTTCTTTCTTAAGACTCATTTTGGTTCCTGTTCCTAAGACCAAAACTTTGACTTTGTGAAATTGAGTTGTGGTGTCCGTTTGAAGTCTCACAGTTTTTAATTCCTTTGGAGGGTTCCAGGAAAAACCCTCCAGAAAAAAACCCTCCAAATCGAGAGGGGTCCTATCCTTATTAAACGCACGTATTGTCAAAATTTTTAAAATTTCCCGTAGATTTCACGGATTCTTTTTAGGGCTTTAGAGAACTTGTTTCAAAACAACTTCTCCAGTGGCCTTTTTTTGAAAATGAATATTCTGCAACTTATTTCGGTGTGACATTGCCCACTGAATTTCATGGTGTGCCGTGAAAAGACGTGCCTTACAAAAACAACAAGACC</canonical>
            <polymorphic>AACAAACTGATTACATGAATCCCATTCCATTACTTAAAACAAATGTTGAGAAACTGTAGATTGCTAGCAAACAAGCAGTTTTTGATGAGATTGATGAGGTCATTACTAAGGTGGTAATGAAAGTGTGGGAATCTTCAGTCGGTAATTGAGATATTTTCAAGGATGGGATTCACTTGTAAATTTATTGATACCATTATCCTTGTCTGAGAAAAAAGATTGAAGATCTCGTTTACCTTTTTAAGACACAAGAGAAAACTACCGTATTCTTTGAGCCTATTTTAAACTTTTTTTTTTTTTTTCTTTTTTTTTTTCCTTGGTCTACCGATTTTTCGAGGACATTTTATTTTTAAAATGTAAACCTGAAAAAATCCAATTGTGAAAATCATTGAAAAAAAGAATAACGACCGTCAAAAACTTGAGCAAATAGAAAATAATATTTAAAATAGATTCAAAAATACGGTTTTGCTCTTGATACCAAAAATTTGAATATTTAAATTTTKGAAATTCATGAAATTTTGAGAATAAATATAAGTAAAAAAGTTTCTGATTAAATTTGGAGGTCTTGATGAACTGAAATTTCAATAGGGTTCCGGAATATTCCAAATACATGAAGTAAACCATTCCTTTTCTTTCTTAAGACTCATTTTGGTTCCTGTTCCTAAGACCAAAACTTTGACTTTGTGAAATTGAGTTGTGGTGTCCGTTTGAAGTCTCACAGTTTTTAATTCCTTTGGAGGGTTCCAGGAAAAACCCTCCAGAAAAAAACCCTCCAAATCGAGAGGGGTCCTATCCTTATTAAACGCACGTATTGTCAAAATTTTTAAAATTTCCCGTAGATTTCACGGATTCTTTTTAGGGCTTTAGAGAACTTGTTTCAAAACAACTTCTCCAGTGGCCTTTTTTTGAAAATGAATATTCTGCAACTTATTTCGGTGTGACATTGCCCACTGAATTTCATGGTGTGCCGTGAAAAGACGTGCCTTACAAAAACAACAAGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAAAAACTTGAGCAAATAGAA</pcr_primer_p1>
		<pcr_primer_p2>ACAGGAACCAAAATGAGTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCAAAAACTTGAGCAAATAGAAAATAATATTTAAAATAGATTCAAAAATACGGTTTTGCTCTTGATACCAAAAATTTGAATATTTAAATTTTTGAAATTCATGAAATTTTGAGAATAAATATAAGTAAAAAAGTTTCTGATTAAATTTGGAGGTCTTGATGAACTGAAATTTCAATAGGGTTCCGGAATATTCCAAATACATGAAGTAAACCATTCCTTTTCTTTCTTAAGACTCATTTTGGTTCCTGT</canonical_amplicon>
		<polymorphic_amplicon>GTCAAAAACTTGAGCAAATAGAAAATAATATTTAAAATAGATTCAAAAATACGGTTTTGCTCTTGATACCAAAAATTTGAATATTTAAATTTTKGAAATTCATGAAATTTTGAGAATAAATATAAGTAAAAAAGTTTCTGATTAAATTTGGAGGTCTTGATGAACTGAAATTTCAATAGGGTTCCGGAATATTCCAAATACATGAAGTAAACCATTCCTTTTCTTTCTTAAGACTCATTTTGGTTCCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30210</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>236573</contig_pos>
        <strand>+</strand>
        <context>TTAAATTTTK[A/G]AAATYCATGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAATACGGTTTTGCTCTTGATACCAAAAATTTGAATATTTAAATTTTT</left_flank>
        <right_flank>AAATTCATGAAATTTTGAGAATAAATATAAGTAAAAAAGTTTCTGATTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAACTGATTACATGAATCCCATTCCATTACTTAAAACAAATGTTGAGAAACTGTAGATTGCTAGCAAACAAGCAGTTTTTGATGAGATTGATGAGGTCATTACTAAGGTGGTAATGAAAGTGTGGGAATCTTCAGTCGGTAATTGAGATATTTTCAAGGATGGGATTCACTTGTAAATTTATTGATACCATTATCCTTGTCTGAGAAAAAAGATTGAAGATCTCGTTTACCTTTTTAAGACACAAGAGAAAACTACCGTATTCTTTGAGCCTATTTTAAACTTTTTTTTTTTTTTTCTTTTTTTTTTTCCTTGGTCTACCGATTTTTCGAGGACATTTTATTTTTAAAATGTAAACCTGAAAAAATCCAATTGTGAAAATCATTGAAAAAAAGAATAACGACCGTCAAAAACTTGAGCAAATAGAAAATAATATTTAAAATAGATTCAAAAATACGGTTTTGCTCTTGATACCAAAAATTTGAATATTTAAATTTTTGAAATTCATGAAATTTTGAGAATAAATATAAGTAAAAAAGTTTCTGATTAAATTTGGAGGTCTTGATGAACTGAAATTTCAATAGGGTTCCGGAATATTCCAAATACATGAAGTAAACCATTCCTTTTCTTTCTTAAGACTCATTTTGGTTCCTGTTCCTAAGACCAAAACTTTGACTTTGTGAAATTGAGTTGTGGTGTCCGTTTGAAGTCTCACAGTTTTTAATTCCTTTGGAGGGTTCCAGGAAAAACCCTCCAGAAAAAAACCCTCCAAATCGAGAGGGGTCCTATCCTTATTAAACGCACGTATTGTCAAAATTTTTAAAATTTCCCGTAGATTTCACGGATTCTTTTTAGGGCTTTAGAGAACTTGTTTCAAAACAACTTCTCCAGTGGCCTTTTTTTGAAAATGAATATTCTGCAACTTATTTCGGTGTGACATTGCCCACTGAATTTCATGGTGTGCCGTGAAAAGACGTGCCTTACAAAAACAACAAGACCC</canonical>
            <polymorphic>ACAAACTGATTACATGAATCCCATTCCATTACTTAAAACAAATGTTGAGAAACTGTAGATTGCTAGCAAACAAGCAGTTTTTGATGAGATTGATGAGGTCATTACTAAGGTGGTAATGAAAGTGTGGGAATCTTCAGTCGGTAATTGAGATATTTTCAAGGATGGGATTCACTTGTAAATTTATTGATACCATTATCCTTGTCTGAGAAAAAAGATTGAAGATCTCGTTTACCTTTTTAAGACACAAGAGAAAACTACCGTATTCTTTGAGCCTATTTTAAACTTTTTTTTTTTTTTTCTTTTTTTTTTTCCTTGGTCTACCGATTTTTCGAGGACATTTTATTTTTAAAATGTAAACCTGAAAAAATCCAATTGTGAAAATCATTGAAAAAAAGAATAACGACCGTCAAAAACTTGAGCAAATAGAAAATAATATTTAAAATAGATTCAAAAATACGGTTTTGCTCTTGATACCAAAAATTTGAATATTTAAATTTTTRAAATTCATGAAATTTTGAGAATAAATATAAGTAAAAAAGTTTCTGATTAAATTTGGAGGTCTTGATGAACTGAAATTTCAATAGGGTTCCGGAATATTCCAAATACATGAAGTAAACCATTCCTTTTCTTTCTTAAGACTCATTTTGGTTCCTGTTCCTAAGACCAAAACTTTGACTTTGTGAAATTGAGTTGTGGTGTCCGTTTGAAGTCTCACAGTTTTTAATTCCTTTGGAGGGTTCCAGGAAAAACCCTCCAGAAAAAAACCCTCCAAATCGAGAGGGGTCCTATCCTTATTAAACGCACGTATTGTCAAAATTTTTAAAATTTCCCGTAGATTTCACGGATTCTTTTTAGGGCTTTAGAGAACTTGTTTCAAAACAACTTCTCCAGTGGCCTTTTTTTGAAAATGAATATTCTGCAACTTATTTCGGTGTGACATTGCCCACTGAATTTCATGGTGTGCCGTGAAAAGACGTGCCTTACAAAAACAACAAGACCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAAAAACTTGAGCAAATAGAA</pcr_primer_p1>
		<pcr_primer_p2>ACAGGAACCAAAATGAGTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCAAAAACTTGAGCAAATAGAAAATAATATTTAAAATAGATTCAAAAATACGGTTTTGCTCTTGATACCAAAAATTTGAATATTTAAATTTTTGAAATTCATGAAATTTTGAGAATAAATATAAGTAAAAAAGTTTCTGATTAAATTTGGAGGTCTTGATGAACTGAAATTTCAATAGGGTTCCGGAATATTCCAAATACATGAAGTAAACCATTCCTTTTCTTTCTTAAGACTCATTTTGGTTCCTGT</canonical_amplicon>
		<polymorphic_amplicon>GTCAAAAACTTGAGCAAATAGAAAATAATATTTAAAATAGATTCAAAAATACGGTTTTGCTCTTGATACCAAAAATTTGAATATTTAAATTTTTRAAATTCATGAAATTTTGAGAATAAATATAAGTAAAAAAGTTTCTGATTAAATTTGGAGGTCTTGATGAACTGAAATTTCAATAGGGTTCCGGAATATTCCAAATACATGAAGTAAACCATTCCTTTTCTTTCTTAAGACTCATTTTGGTTCCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30211</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>236578</contig_pos>
        <strand>+</strand>
        <context>TTTTKRAAAT[C/T]CATGAAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACGGTTTTGCTCTTGATACCAAAAATTTGAATATTTAAATTTTTGAAAT</left_flank>
        <right_flank>CATGAAATTTTGAGAATAAATATAAGTAAAAAAGTTTCTGATTAAATTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGATTACATGAATCCCATTCCATTACTTAAAACAAATGTTGAGAAACTGTAGATTGCTAGCAAACAAGCAGTTTTTGATGAGATTGATGAGGTCATTACTAAGGTGGTAATGAAAGTGTGGGAATCTTCAGTCGGTAATTGAGATATTTTCAAGGATGGGATTCACTTGTAAATTTATTGATACCATTATCCTTGTCTGAGAAAAAAGATTGAAGATCTCGTTTACCTTTTTAAGACACAAGAGAAAACTACCGTATTCTTTGAGCCTATTTTAAACTTTTTTTTTTTTTTTCTTTTTTTTTTTCCTTGGTCTACCGATTTTTCGAGGACATTTTATTTTTAAAATGTAAACCTGAAAAAATCCAATTGTGAAAATCATTGAAAAAAAGAATAACGACCGTCAAAAACTTGAGCAAATAGAAAATAATATTTAAAATAGATTCAAAAATACGGTTTTGCTCTTGATACCAAAAATTTGAATATTTAAATTTTTGAAATTCATGAAATTTTGAGAATAAATATAAGTAAAAAAGTTTCTGATTAAATTTGGAGGTCTTGATGAACTGAAATTTCAATAGGGTTCCGGAATATTCCAAATACATGAAGTAAACCATTCCTTTTCTTTCTTAAGACTCATTTTGGTTCCTGTTCCTAAGACCAAAACTTTGACTTTGTGAAATTGAGTTGTGGTGTCCGTTTGAAGTCTCACAGTTTTTAATTCCTTTGGAGGGTTCCAGGAAAAACCCTCCAGAAAAAAACCCTCCAAATCGAGAGGGGTCCTATCCTTATTAAACGCACGTATTGTCAAAATTTTTAAAATTTCCCGTAGATTTCACGGATTCTTTTTAGGGCTTTAGAGAACTTGTTTCAAAACAACTTCTCCAGTGGCCTTTTTTTGAAAATGAATATTCTGCAACTTATTTCGGTGTGACATTGCCCACTGAATTTCATGGTGTGCCGTGAAAAGACGTGCCTTACAAAAACAACAAGACCCGATAA</canonical>
            <polymorphic>CTGATTACATGAATCCCATTCCATTACTTAAAACAAATGTTGAGAAACTGTAGATTGCTAGCAAACAAGCAGTTTTTGATGAGATTGATGAGGTCATTACTAAGGTGGTAATGAAAGTGTGGGAATCTTCAGTCGGTAATTGAGATATTTTCAAGGATGGGATTCACTTGTAAATTTATTGATACCATTATCCTTGTCTGAGAAAAAAGATTGAAGATCTCGTTTACCTTTTTAAGACACAAGAGAAAACTACCGTATTCTTTGAGCCTATTTTAAACTTTTTTTTTTTTTTTCTTTTTTTTTTTCCTTGGTCTACCGATTTTTCGAGGACATTTTATTTTTAAAATGTAAACCTGAAAAAATCCAATTGTGAAAATCATTGAAAAAAAGAATAACGACCGTCAAAAACTTGAGCAAATAGAAAATAATATTTAAAATAGATTCAAAAATACGGTTTTGCTCTTGATACCAAAAATTTGAATATTTAAATTTTTGAAATYCATGAAATTTTGAGAATAAATATAAGTAAAAAAGTTTCTGATTAAATTTGGAGGTCTTGATGAACTGAAATTTCAATAGGGTTCCGGAATATTCCAAATACATGAAGTAAACCATTCCTTTTCTTTCTTAAGACTCATTTTGGTTCCTGTTCCTAAGACCAAAACTTTGACTTTGTGAAATTGAGTTGTGGTGTCCGTTTGAAGTCTCACAGTTTTTAATTCCTTTGGAGGGTTCCAGGAAAAACCCTCCAGAAAAAAACCCTCCAAATCGAGAGGGGTCCTATCCTTATTAAACGCACGTATTGTCAAAATTTTTAAAATTTCCCGTAGATTTCACGGATTCTTTTTAGGGCTTTAGAGAACTTGTTTCAAAACAACTTCTCCAGTGGCCTTTTTTTGAAAATGAATATTCTGCAACTTATTTCGGTGTGACATTGCCCACTGAATTTCATGGTGTGCCGTGAAAAGACGTGCCTTACAAAAACAACAAGACCCGATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>301 241 172 126 56 39 24 14 9 9 9</canonical_bands>
                <polymorphic_bands>301 241 172 126 56 39 24 18 14 9</polymorphic_bands>
            </assay>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>462 230 165 55 39 28 21</canonical_bands>
                <polymorphic_bands>462 230 165 94 28 21</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>193 137 126 110 108 92 56 39 39 35 24 14 9 9 9</canonical_bands>
                <polymorphic_bands>193 137 126 110 108 92 56 39 39 35 24 18 14 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCAAAAACTTGAGCAAATAGAA</pcr_primer_p1>
		<pcr_primer_p2>ACAGGAACCAAAATGAGTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCAAAAACTTGAGCAAATAGAAAATAATATTTAAAATAGATTCAAAAATACGGTTTTGCTCTTGATACCAAAAATTTGAATATTTAAATTTTTGAAATTCATGAAATTTTGAGAATAAATATAAGTAAAAAAGTTTCTGATTAAATTTGGAGGTCTTGATGAACTGAAATTTCAATAGGGTTCCGGAATATTCCAAATACATGAAGTAAACCATTCCTTTTCTTTCTTAAGACTCATTTTGGTTCCTGT</canonical_amplicon>
		<polymorphic_amplicon>GTCAAAAACTTGAGCAAATAGAAAATAATATTTAAAATAGATTCAAAAATACGGTTTTGCTCTTGATACCAAAAATTTGAATATTTAAATTTTTGAAATYCATGAAATTTTGAGAATAAATATAAGTAAAAAAGTTTCTGATTAAATTTGGAGGTCTTGATGAACTGAAATTTCAATAGGGTTCCGGAATATTCCAAATACATGAAGTAAACCATTCCTTTTCTTTCTTAAGACTCATTTTGGTTCCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30212</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>336191</contig_pos>
        <strand></strand>
        <context>ttagtttttt[T/A]aatgtttgcc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ACCTAGATCACTGTGAATTCACAGAATTGTTAGAAAGTTCTTAGTTTTTT</left_flank>
        <right_flank>AATGTTTGCCGATTTCTGAAAAACGCTCATTTTTTTACATATTCAGAACA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAGAGGAGCTGCTTTCAGATTACGGAGAGACTGTTGTCTTACAGGATCTTTCGTTTTTGTTCCATAAATATTTATCAGACTACAACCGAAATGTGCTTTACAAGCGTTACATGGAAATGGTCATCACGTTTCCAATGTGGAAACCAGTAGTAGATCCCGAGTTTTCTGTGGTACTTAAAGATTTAGAACAATATCCTGTACAAATTGAGAAAGAGTATCAAATTAATTTTGTGAATCATATAAATCTTCAAAATAATTTAAGAAATGGAGAAGATATCAAAAAAGGTTTGTGTCAAAAGTATATACTAAAATGTACAAACAGTAACGGTCAATAAAATATAAAACATTTTTTCAGTTTATGTTCTGCTATTTTGACAATTTTCAGGATTTGCGAGCTTGGTTGTCAAGTTTCCGATCACTTTGAAAATTTACGAGAGTGTGAAACATACCTAGATCACTGTGAATTCACAGAATTGTTAGAAAGTTCTTAGTTTTTTTAATGTTTGCCGATTTCTGAAAAACGCTCATTTTTTTACATATTCAGAACAAAGCAAGCCAAAAAAAGTCGTTCATAAAACTGCAAAAAGCTGAAAAATCAGGAATTTCAAAATTTTCTGGATGCGAAATTTCTACTCTGGGTCTGTTGAAGACCCTCAAAAAAATTTTTGATGTGTTCGGAAACTTGACAGCCAAGCTCGAGACTAATGAAAATGGCCGAAAATGAACTGAAAAATATTTTTTGTGTATTTTATTGACTGGTGATGTATATAACTTTTCTTTCAGAAAACGTTAGCTTTTTTGATGGTGATATTTTCAATGTATATCGAGAAATGATAAACAATAATATAAGTTGGTCCCCTCAAAAAACCAAAGAACTCTTTCAAAAGCGACTCGATCATTTTTTGGCCAATAGAGAGAAATCGGAGACTGATCAGACGTTTATCAATTTTTATCAGTTCCTTCTACAAATCAAGTCAAGCATTTTGGATTTTGATGCT</canonical>
            <polymorphic>CAAAGAGGAGCTGCTTTCAGATTACGGAGAGACTGTTGTCTTACAGGATCTTTCGTTTTTGTTCCATAAATATTTATCAGACTACAACCGAAATGTGCTTTACAAGCGTTACATGGAAATGGTCATCACGTTTCCAATGTGGAAACCAGTAGTAGATCCCGAGTTTTCTGTGGTACTTAAAGATTTAGAACAATATCCTGTACAAATTGAGAAAGAGTATCAAATTAATTTTGTGAATCATATAAATCTTCAAAATAATTTAAGAAATGGAGAAGATATCAAAAAAGGTTTGTGTCAAAAGTATATACTAAAATGTACAAACAGTAACGGTCAATAAAATATAAAACATTTTTTCAGTTTATGTTCTGCTATTTTGACAATTTTCAGGATTTGCGAGCTTGGTTGTCAAGTTTCCGATCACTTTGAAAATTTACGAGAGTGTGAAACATACCTAGATCACTGTGAATTCACAGAATTGTTAGAAAGTTCTTAGTTTTTTWAATGTTTGCCGATTTCTGAAAAACGCTCATTTTTTTACATATTCAGAACAAAGCAAGCCAAAAAAAGTCGTTCATAAAACTGCAAAAAGCTGAAAAATCAGGAATTTCAAAATTTTCTGGATGCGAAATTTCTACTCTGGGTCTGTTGAAGACCCTCAAAAAAATTTTTGATGTGTTCGGAAACTTGACAGCCAAGCTCGAGACTAATGAAAATGGCCGAAAATGAACTGAAAAATATTTTTTGTGTATTTTATTGACTGGTGATGTATATAACTTTTCTTTCAGAAAACGTTAGCTTTTTTGATGGTGATATTTTCAATGTATATCGAGAAATGATAAACAATAATATAAGTTGGTCCCCTCAAAAAACCAAAGAACTCTTTCAAAAGCGACTCGATCATTTTTTGGCCAATAGAGAGAAATCGGAGACTGATCAGACGTTTATCAATTTTTATCAGTTCCTTCTACAAATCAAGTCAAGCATTTTGGATTTTGATGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>501 239 177 48 35</canonical_bands>
                <polymorphic_bands>740 177 48 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAAATGGAGAAGATATCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGAAAATATCACCATCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>559</pcr_amplicon_size>
		<canonical_amplicon>AAGAAATGGAGAAGATATCAAAAAAGGTTTGTGTCAAAAGTATATACTAAAATGTACAAACAGTAACGGTCAATAAAATATAAAACATTTTTTCAGTTTATGTTCTGCTATTTTGACAATTTTCAGGATTTGCGAGCTTGGTTGTCAAGTTTCCGATCACTTTGAAAATTTACGAGAGTGTGAAACATACCTAGATCACTGTGAATTCACAGAATTGTTAGAAAGTTCTTAGTTTTTTTAATGTTTGCCGATTTCTGAAAAACGCTCATTTTTTTACATATTCAGAACAAAGCAAGCCAAAAAAAGTCGTTCATAAAACTGCAAAAAGCTGAAAAATCAGGAATTTCAAAATTTTCTGGATGCGAAATTTCTACTCTGGGTCTGTTGAAGACCCTCAAAAAAATTTTTGATGTGTTCGGAAACTTGACAGCCAAGCTCGAGACTAATGAAAATGGCCGAAAATGAACTGAAAAATATTTTTTGTGTATTTTATTGACTGGTGATGTATATAACTTTTCTTTCAGAAAACGTTAGCTTTTTTGATGGTGATATTTTCAAT</canonical_amplicon>
		<polymorphic_amplicon>AAGAAATGGAGAAGATATCAAAAAAGGTTTGTGTCAAAAGTATATACTAAAATGTACAAACAGTAACGGTCAATAAAATATAAAACATTTTTTCAGTTTATGTTCTGCTATTTTGACAATTTTCAGGATTTGCGAGCTTGGTTGTCAAGTTTCCGATCACTTTGAAAATTTACGAGAGTGTGAAACATACCTAGATCACTGTGAATTCACAGAATTGTTAGAAAGTTCTTAGTTTTTTWAATGTTTGCCGATTTCTGAAAAACGCTCATTTTTTTACATATTCAGAACAAAGCAAGCCAAAAAAAGTCGTTCATAAAACTGCAAAAAGCTGAAAAATCAGGAATTTCAAAATTTTCTGGATGCGAAATTTCTACTCTGGGTCTGTTGAAGACCCTCAAAAAAATTTTTGATGTGTTCGGAAACTTGACAGCCAAGCTCGAGACTAATGAAAATGGCCGAAAATGAACTGAAAAATATTTTTTGTGTATTTTATTGACTGGTGATGTATATAACTTTTCTTTCAGAAAACGTTAGCTTTTTTGATGGTGATATTTTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30213</snp_id>
        <super_contig>c005101066.Contig1</super_contig>
        <contig_pos>336295</contig_pos>
        <strand></strand>
        <context>aaaatcagga[A/T]tttcaaaatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAGCCAAAAAAAGTCGTTCATAAAACTGCAAAAAGCTGAAAAATCAGGA</left_flank>
        <right_flank>TTTCAAAATTTTCTGGATGCGAAATTTCTACTCTGGGTCTGTTGAAGACC</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCGTTACATGGAAATGGTCATCACGTTTCCAATGTGGAAACCAGTAGTAGATCCCGAGTTTTCTGTGGTACTTAAAGATTTAGAACAATATCCTGTACAAATTGAGAAAGAGTATCAAATTAATTTTGTGAATCATATAAATCTTCAAAATAATTTAAGAAATGGAGAAGATATCAAAAAAGGTTTGTGTCAAAAGTATATACTAAAATGTACAAACAGTAACGGTCAATAAAATATAAAACATTTTTTCAGTTTATGTTCTGCTATTTTGACAATTTTCAGGATTTGCGAGCTTGGTTGTCAAGTTTCCGATCACTTTGAAAATTTACGAGAGTGTGAAACATACCTAGATCACTGTGAATTCACAGAATTGTTAGAAAGTTCTTAGTTTTTTTAATGTTTGCCGATTTCTGAAAAACGCTCATTTTTTTACATATTCAGAACAAAGCAAGCCAAAAAAAGTCGTTCATAAAACTGCAAAAAGCTGAAAAATCAGGAATTTCAAAATTTTCTGGATGCGAAATTTCTACTCTGGGTCTGTTGAAGACCCTCAAAAAAATTTTTGATGTGTTCGGAAACTTGACAGCCAAGCTCGAGACTAATGAAAATGGCCGAAAATGAACTGAAAAATATTTTTTGTGTATTTTATTGACTGGTGATGTATATAACTTTTCTTTCAGAAAACGTTAGCTTTTTTGATGGTGATATTTTCAATGTATATCGAGAAATGATAAACAATAATATAAGTTGGTCCCCTCAAAAAACCAAAGAACTCTTTCAAAAGCGACTCGATCATTTTTTGGCCAATAGAGAGAAATCGGAGACTGATCAGACGTTTATCAATTTTTATCAGTTCCTTCTACAAATCAAGTCAAGCATTTTGGATTTTGATGCTTTCTGGTTCCACGCCTGCACTTTCCCCATGGTGATTGAAGGATTTGGTTTCCACCTAACGAACGATAAGAAGTTCTTCAGTCTGGTTTTCAAATGGGAGGAAAA</canonical>
            <polymorphic>AGCGTTACATGGAAATGGTCATCACGTTTCCAATGTGGAAACCAGTAGTAGATCCCGAGTTTTCTGTGGTACTTAAAGATTTAGAACAATATCCTGTACAAATTGAGAAAGAGTATCAAATTAATTTTGTGAATCATATAAATCTTCAAAATAATTTAAGAAATGGAGAAGATATCAAAAAAGGTTTGTGTCAAAAGTATATACTAAAATGTACAAACAGTAACGGTCAATAAAATATAAAACATTTTTTCAGTTTATGTTCTGCTATTTTGACAATTTTCAGGATTTGCGAGCTTGGTTGTCAAGTTTCCGATCACTTTGAAAATTTACGAGAGTGTGAAACATACCTAGATCACTGTGAATTCACAGAATTGTTAGAAAGTTCTTAGTTTTTTTAATGTTTGCCGATTTCTGAAAAACGCTCATTTTTTTACATATTCAGAACAAAGCAAGCCAAAAAAAGTCGTTCATAAAACTGCAAAAAGCTGAAAAATCAGGAWTTTCAAAATTTTCTGGATGCGAAATTTCTACTCTGGGTCTGTTGAAGACCCTCAAAAAAATTTTTGATGTGTTCGGAAACTTGACAGCCAAGCTCGAGACTAATGAAAATGGCCGAAAATGAACTGAAAAATATTTTTTGTGTATTTTATTGACTGGTGATGTATATAACTTTTCTTTCAGAAAACGTTAGCTTTTTTGATGGTGATATTTTCAATGTATATCGAGAAATGATAAACAATAATATAAGTTGGTCCCCTCAAAAAACCAAAGAACTCTTTCAAAAGCGACTCGATCATTTTTTGGCCAATAGAGAGAAATCGGAGACTGATCAGACGTTTATCAATTTTTATCAGTTCCTTCTACAAATCAAGTCAAGCATTTTGGATTTTGATGCTTTCTGGTTCCACGCCTGCACTTTCCCCATGGTGATTGAAGGATTTGGTTTCCACCTAACGAACGATAAGAAGTTCTTCAGTCTGGTTTTCAAATGGGAGGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>442 323 138 37 36 16 8</canonical_bands>
                <polymorphic_bands>442 323 146 37 36 16</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>284 158 129 122 100 49 37 36 30 18 16 9 8 4</canonical_bands>
                <polymorphic_bands>284 158 137 122 100 49 37 36 30 18 16 9 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAAATGGAGAAGATATCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGAAAATATCACCATCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>559</pcr_amplicon_size>
		<canonical_amplicon>AAGAAATGGAGAAGATATCAAAAAAGGTTTGTGTCAAAAGTATATACTAAAATGTACAAACAGTAACGGTCAATAAAATATAAAACATTTTTTCAGTTTATGTTCTGCTATTTTGACAATTTTCAGGATTTGCGAGCTTGGTTGTCAAGTTTCCGATCACTTTGAAAATTTACGAGAGTGTGAAACATACCTAGATCACTGTGAATTCACAGAATTGTTAGAAAGTTCTTAGTTTTTTTAATGTTTGCCGATTTCTGAAAAACGCTCATTTTTTTACATATTCAGAACAAAGCAAGCCAAAAAAAGTCGTTCATAAAACTGCAAAAAGCTGAAAAATCAGGAATTTCAAAATTTTCTGGATGCGAAATTTCTACTCTGGGTCTGTTGAAGACCCTCAAAAAAATTTTTGATGTGTTCGGAAACTTGACAGCCAAGCTCGAGACTAATGAAAATGGCCGAAAATGAACTGAAAAATATTTTTTGTGTATTTTATTGACTGGTGATGTATATAACTTTTCTTTCAGAAAACGTTAGCTTTTTTGATGGTGATATTTTCAAT</canonical_amplicon>
		<polymorphic_amplicon>AAGAAATGGAGAAGATATCAAAAAAGGTTTGTGTCAAAAGTATATACTAAAATGTACAAACAGTAACGGTCAATAAAATATAAAACATTTTTTCAGTTTATGTTCTGCTATTTTGACAATTTTCAGGATTTGCGAGCTTGGTTGTCAAGTTTCCGATCACTTTGAAAATTTACGAGAGTGTGAAACATACCTAGATCACTGTGAATTCACAGAATTGTTAGAAAGTTCTTAGTTTTTTTAATGTTTGCCGATTTCTGAAAAACGCTCATTTTTTTACATATTCAGAACAAAGCAAGCCAAAAAAAGTCGTTCATAAAACTGCAAAAAGCTGAAAAATCAGGAWTTTCAAAATTTTCTGGATGCGAAATTTCTACTCTGGGTCTGTTGAAGACCCTCAAAAAAATTTTTGATGTGTTCGGAAACTTGACAGCCAAGCTCGAGACTAATGAAAATGGCCGAAAATGAACTGAAAAATATTTTTTGTGTATTTTATTGACTGGTGATGTATATAACTTTTCTTTCAGAAAACGTTAGCTTTTTTGATGGTGATATTTTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30214</snp_id>
        <super_contig>c005200843.Contig2</super_contig>
        <contig_pos>17796</contig_pos>
        <strand>+</strand>
        <context>TGTTCCCCTT[C/G]TTCCAGAATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCACTTGTAGACAGCCCGCTCTGGCCCCTTCCCTTCCCGCTGTTCCCCTT</left_flank>
        <right_flank>TTCCAGAATGTAAATGCGGGGGTCGTAATCAGCAACATGTGATACTGCAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGAAACCACGAAAATTGAAAAAAAATGTGTCAAACGCCAAACTTTTTTCTTAACACTCTGCATAGCTCAAAAACTACGGTAGTTGGAAAAACCTTGAAGCCTGTAATAGAAGGAATGAATTTTTTGAATTTGAACCTATATAACTCCGTTCCTGTAAAAGATTTGAAAAAGTTGTCAACTGATAAAATGTTTTTCATGATATCAGTAACATTTTATTAATTAGCAATTTTTTGATATCTCCTACAGTAACCGAGAAAAATTTGGTTAAACTTGAAAAGTTGGCGTTTTCATGCATCGTCTGACTGCCTCTTAACTTTGACCCACTCGGTAAATGTGGGCAACTTCTTCCCCAACTTTGGGCAGCTATTGTCCTAACTCCAGGCAACTTCTAGCATTTCATAGGTCAAACGCTGCCCAGCTTTAGGAGAGCTTCTACCCAGCGTTTGCCCACTTGTAGACAGCCCGCTCTGGCCCCTTCCCTTCCCGCTGTTCCCCTTCTTCCAGAATGTAAATGCGGGGGTCGTAATCAGCAACATGTGATACTGCATATTCAACGTCTGAATTACATACAGTTACAGACAACGCGTCTACAAAACTTTCGCTTCTACAACGCTTACAAATTTGAACTGAAACTAACTGAAGATGTCCATCGTCGGCTCGTTTGCGTCTTCAGGACCACTACTCTCAAACGCTTCATCCTCTTCCATTACATCGTCCTTTAAATCGTTCGTAATTGGGTTGTCATAAATTTCTTCTTTTTCAAGTTGACTGTTCCGTTTCGTCGGAGGTTCTAAAATTGAGTCAATGTGAGCCTTAATTTAGAAAAAAAATCATACCTCCTGGGTGGGATACTTCTGATGGGATTTCGTAGATTTCTCCTCTTGCCATCTGATATTCCATCTCTTAAAATGAAACATGGCAAAACTCATCCTTTTCTATGCTCACCAATGGCTTCCCGTTTTTTGTTCGCTTCACCCGATTCCACTCATCGATGACAC</canonical>
            <polymorphic>GAAGAAACCACGAAAATTGAAAAAAAATGTGTCAAACGCCAAACTTTTTTCTTAACACTCTGCATAGCTCAAAAACTACGGTAGTTGGAAAAACCTTGAAGCCTGTAATAGAAGGAATGAATTTTTTGAATTTGAACCTATATAACTCCGTTCCTGTAAAAGATTTGAAAAAGTTGTCAACTGATAAAATGTTTTTCATGATATCAGTAACATTTTATTAATTAGCAATTTTTTGATATCTCCTACAGTAACCGAGAAAAATTTGGTTAAACTTGAAAAGTTGGCGTTTTCATGCATCGTCTGACTGCCTCTTAACTTTGACCCACTCGGTAAATGTGGGCAACTTCTTCCCCAACTTTGGGCAGCTATTGTCCTAACTCCAGGCAACTTCTAGCATTTCATAGGTCAAACGCTGCCCAGCTTTAGGAGAGCTTCTACCCAGCGTTTGCCCACTTGTAGACAGCCCGCTCTGGCCCCTTCCCTTCCCGCTGTTCCCCTTSTTCCAGAATGTAAATGCGGGGGTCGTAATCAGCAACATGTGATACTGCATATTCAACGTCTGAATTACATACAGTTACAGACAACGCGTCTACAAAACTTTCGCTTCTACAACGCTTACAAATTTGAACTGAAACTAACTGAAGATGTCCATCGTCGGCTCGTTTGCGTCTTCAGGACCACTACTCTCAAACGCTTCATCCTCTTCCATTACATCGTCCTTTAAATCGTTCGTAATTGGGTTGTCATAAATTTCTTCTTTTTCAAGTTGACTGTTCCGTTTCGTCGGAGGTTCTAAAATTGAGTCAATGTGAGCCTTAATTTAGAAAAAAAATCATACCTCCTGGGTGGGATACTTCTGATGGGATTTCGTAGATTTCTCCTCTTGCCATCTGATATTCCATCTCTTAAAATGAAACATGGCAAAACTCATCCTTTTCTATGCTCACCAATGGCTTCCCGTTTTTTGTTCGCTTCACCCGATTCCACTCATCGATGACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACTTCTAGCATTTCATAGGTC</pcr_primer_p1>
		<pcr_primer_p2>AGTTCAAATTTGTAAGCGTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAACTTCTAGCATTTCATAGGTCAAACGCTGCCCAGCTTTAGGAGAGCTTCTACCCAGCGTTTGCCCACTTGTAGACAGCCCGCTCTGGCCCCTTCCCTTCCCGCTGTTCCCCTTCTTCCAGAATGTAAATGCGGGGGTCGTAATCAGCAACATGTGATACTGCATATTCAACGTCTGAATTACATACAGTTACAGACAACGCGTCTACAAAACTTTCGCTTCTACAACGCTTACAAATTTGAACT</canonical_amplicon>
		<polymorphic_amplicon>CAACTTCTAGCATTTCATAGGTCAAACGCTGCCCAGCTTTAGGAGAGCTTCTACCCAGCGTTTGCCCACTTGTAGACAGCCCGCTCTGGCCCCTTCCCTTCCCGCTGTTCCCCTTSTTCCAGAATGTAAATGCGGGGGTCGTAATCAGCAACATGTGATACTGCATATTCAACGTCTGAATTACATACAGTTACAGACAACGCGTCTACAAAACTTTCGCTTCTACAACGCTTACAAATTTGAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30215</snp_id>
        <super_contig>c005200843.Contig2</super_contig>
        <contig_pos>17836</contig_pos>
        <strand>+</strand>
        <context>CAGCAACATG[C/T]GATACTGCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTTCCCCTTCTTCCAGAATGTAAATGCGGGGGTCGTAATCAGCAACATG</left_flank>
        <right_flank>GATACTGCATATTCAACGTCTGAATTACATACAGTTACAGACAACGCGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTTTTTTCTTAACACTCTGCATAGCTCAAAAACTACGGTAGTTGGAAAAACCTTGAAGCCTGTAATAGAAGGAATGAATTTTTTGAATTTGAACCTATATAACTCCGTTCCTGTAAAAGATTTGAAAAAGTTGTCAACTGATAAAATGTTTTTCATGATATCAGTAACATTTTATTAATTAGCAATTTTTTGATATCTCCTACAGTAACCGAGAAAAATTTGGTTAAACTTGAAAAGTTGGCGTTTTCATGCATCGTCTGACTGCCTCTTAACTTTGACCCACTCGGTAAATGTGGGCAACTTCTTCCCCAACTTTGGGCAGCTATTGTCCTAACTCCAGGCAACTTCTAGCATTTCATAGGTCAAACGCTGCCCAGCTTTAGGAGAGCTTCTACCCAGCGTTTGCCCACTTGTAGACAGCCCGCTCTGGCCCCTTCCCTTCCCGCTGTTCCCCTTCTTCCAGAATGTAAATGCGGGGGTCGTAATCAGCAACATGTGATACTGCATATTCAACGTCTGAATTACATACAGTTACAGACAACGCGTCTACAAAACTTTCGCTTCTACAACGCTTACAAATTTGAACTGAAACTAACTGAAGATGTCCATCGTCGGCTCGTTTGCGTCTTCAGGACCACTACTCTCAAACGCTTCATCCTCTTCCATTACATCGTCCTTTAAATCGTTCGTAATTGGGTTGTCATAAATTTCTTCTTTTTCAAGTTGACTGTTCCGTTTCGTCGGAGGTTCTAAAATTGAGTCAATGTGAGCCTTAATTTAGAAAAAAAATCATACCTCCTGGGTGGGATACTTCTGATGGGATTTCGTAGATTTCTCCTCTTGCCATCTGATATTCCATCTCTTAAAATGAAACATGGCAAAACTCATCCTTTTCTATGCTCACCAATGGCTTCCCGTTTTTTGTTCGCTTCACCCGATTCCACTCATCGATGACACTAATCGATGACACCTACTGTTCTCTCGTTGAAAACTGATA</canonical>
            <polymorphic>AAACTTTTTTCTTAACACTCTGCATAGCTCAAAAACTACGGTAGTTGGAAAAACCTTGAAGCCTGTAATAGAAGGAATGAATTTTTTGAATTTGAACCTATATAACTCCGTTCCTGTAAAAGATTTGAAAAAGTTGTCAACTGATAAAATGTTTTTCATGATATCAGTAACATTTTATTAATTAGCAATTTTTTGATATCTCCTACAGTAACCGAGAAAAATTTGGTTAAACTTGAAAAGTTGGCGTTTTCATGCATCGTCTGACTGCCTCTTAACTTTGACCCACTCGGTAAATGTGGGCAACTTCTTCCCCAACTTTGGGCAGCTATTGTCCTAACTCCAGGCAACTTCTAGCATTTCATAGGTCAAACGCTGCCCAGCTTTAGGAGAGCTTCTACCCAGCGTTTGCCCACTTGTAGACAGCCCGCTCTGGCCCCTTCCCTTCCCGCTGTTCCCCTTCTTCCAGAATGTAAATGCGGGGGTCGTAATCAGCAACATGYGATACTGCATATTCAACGTCTGAATTACATACAGTTACAGACAACGCGTCTACAAAACTTTCGCTTCTACAACGCTTACAAATTTGAACTGAAACTAACTGAAGATGTCCATCGTCGGCTCGTTTGCGTCTTCAGGACCACTACTCTCAAACGCTTCATCCTCTTCCATTACATCGTCCTTTAAATCGTTCGTAATTGGGTTGTCATAAATTTCTTCTTTTTCAAGTTGACTGTTCCGTTTCGTCGGAGGTTCTAAAATTGAGTCAATGTGAGCCTTAATTTAGAAAAAAAATCATACCTCCTGGGTGGGATACTTCTGATGGGATTTCGTAGATTTCTCCTCTTGCCATCTGATATTCCATCTCTTAAAATGAAACATGGCAAAACTCATCCTTTTCTATGCTCACCAATGGCTTCCCGTTTTTTGTTCGCTTCACCCGATTCCACTCATCGATGACACTAATCGATGACACCTACTGTTCTCTCGTTGAAAACTGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>495 456 49</canonical_bands>
                <polymorphic_bands>544 456</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>268 139 131 114 98 89 37 30 28 17 13 13 13 10</canonical_bands>
                <polymorphic_bands>268 228 131 114 98 37 30 28 17 13 13 13 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACTTCTAGCATTTCATAGGTC</pcr_primer_p1>
		<pcr_primer_p2>AGTTCAAATTTGTAAGCGTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAACTTCTAGCATTTCATAGGTCAAACGCTGCCCAGCTTTAGGAGAGCTTCTACCCAGCGTTTGCCCACTTGTAGACAGCCCGCTCTGGCCCCTTCCCTTCCCGCTGTTCCCCTTCTTCCAGAATGTAAATGCGGGGGTCGTAATCAGCAACATGTGATACTGCATATTCAACGTCTGAATTACATACAGTTACAGACAACGCGTCTACAAAACTTTCGCTTCTACAACGCTTACAAATTTGAACT</canonical_amplicon>
		<polymorphic_amplicon>CAACTTCTAGCATTTCATAGGTCAAACGCTGCCCAGCTTTAGGAGAGCTTCTACCCAGCGTTTGCCCACTTGTAGACAGCCCGCTCTGGCCCCTTCCCTTCCCGCTGTTCCCCTTCTTCCAGAATGTAAATGCGGGGGTCGTAATCAGCAACATGYGATACTGCATATTCAACGTCTGAATTACATACAGTTACAGACAACGCGTCTACAAAACTTTCGCTTCTACAACGCTTACAAATTTGAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30216</snp_id>
        <super_contig>c005200843.Contig2</super_contig>
        <contig_pos>17942</contig_pos>
        <strand>+</strand>
        <context>TAACTGAAGA[A/T]GTCCAYCGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACTTTCGCTTCTACAACGCTTACAAATTTGAACTGAAACTAACTGAAGA</left_flank>
        <right_flank>GTCCATCGTCGGCTCGTTTGCGTCTTCAGGACCACTACTCTCAAACGCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCGTTCCTGTAAAAGATTTGAAAAAGTTGTCAACTGATAAAATGTTTTTCATGATATCAGTAACATTTTATTAATTAGCAATTTTTTGATATCTCCTACAGTAACCGAGAAAAATTTGGTTAAACTTGAAAAGTTGGCGTTTTCATGCATCGTCTGACTGCCTCTTAACTTTGACCCACTCGGTAAATGTGGGCAACTTCTTCCCCAACTTTGGGCAGCTATTGTCCTAACTCCAGGCAACTTCTAGCATTTCATAGGTCAAACGCTGCCCAGCTTTAGGAGAGCTTCTACCCAGCGTTTGCCCACTTGTAGACAGCCCGCTCTGGCCCCTTCCCTTCCCGCTGTTCCCCTTCTTCCAGAATGTAAATGCGGGGGTCGTAATCAGCAACATGTGATACTGCATATTCAACGTCTGAATTACATACAGTTACAGACAACGCGTCTACAAAACTTTCGCTTCTACAACGCTTACAAATTTGAACTGAAACTAACTGAAGATGTCCATCGTCGGCTCGTTTGCGTCTTCAGGACCACTACTCTCAAACGCTTCATCCTCTTCCATTACATCGTCCTTTAAATCGTTCGTAATTGGGTTGTCATAAATTTCTTCTTTTTCAAGTTGACTGTTCCGTTTCGTCGGAGGTTCTAAAATTGAGTCAATGTGAGCCTTAATTTAGAAAAAAAATCATACCTCCTGGGTGGGATACTTCTGATGGGATTTCGTAGATTTCTCCTCTTGCCATCTGATATTCCATCTCTTAAAATGAAACATGGCAAAACTCATCCTTTTCTATGCTCACCAATGGCTTCCCGTTTTTTGTTCGCTTCACCCGATTCCACTCATCGATGACACTAATCGATGACACCTACTGTTCTCTCGTTGAAAACTGATAAAAGGATAAGAAACTGACAGTATTTGAAAAAAATTCAGAGATAATCGTAAGCAAATTCATAGAAAACGTATGAAAAATATGTTTAAAACTTATAACCGTAAAAAAT</canonical>
            <polymorphic>TCCGTTCCTGTAAAAGATTTGAAAAAGTTGTCAACTGATAAAATGTTTTTCATGATATCAGTAACATTTTATTAATTAGCAATTTTTTGATATCTCCTACAGTAACCGAGAAAAATTTGGTTAAACTTGAAAAGTTGGCGTTTTCATGCATCGTCTGACTGCCTCTTAACTTTGACCCACTCGGTAAATGTGGGCAACTTCTTCCCCAACTTTGGGCAGCTATTGTCCTAACTCCAGGCAACTTCTAGCATTTCATAGGTCAAACGCTGCCCAGCTTTAGGAGAGCTTCTACCCAGCGTTTGCCCACTTGTAGACAGCCCGCTCTGGCCCCTTCCCTTCCCGCTGTTCCCCTTCTTCCAGAATGTAAATGCGGGGGTCGTAATCAGCAACATGTGATACTGCATATTCAACGTCTGAATTACATACAGTTACAGACAACGCGTCTACAAAACTTTCGCTTCTACAACGCTTACAAATTTGAACTGAAACTAACTGAAGAWGTCCATCGTCGGCTCGTTTGCGTCTTCAGGACCACTACTCTCAAACGCTTCATCCTCTTCCATTACATCGTCCTTTAAATCGTTCGTAATTGGGTTGTCATAAATTTCTTCTTTTTCAAGTTGACTGTTCCGTTTCGTCGGAGGTTCTAAAATTGAGTCAATGTGAGCCTTAATTTAGAAAAAAAATCATACCTCCTGGGTGGGATACTTCTGATGGGATTTCGTAGATTTCTCCTCTTGCCATCTGATATTCCATCTCTTAAAATGAAACATGGCAAAACTCATCCTTTTCTATGCTCACCAATGGCTTCCCGTTTTTTGTTCGCTTCACCCGATTCCACTCATCGATGACACTAATCGATGACACCTACTGTTCTCTCGTTGAAAACTGATAAAAGGATAAGAAACTGACAGTATTTGAAAAAAATTCAGAGATAATCGTAAGCAAATTCATAGAAAACGTATGAAAAATATGTTTAAAACTTATAACCGTAAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATNNNNATC</site>
                <isoschizomers>
                    <enzyme>BsaBI</enzyme>
                    <enzyme>Bse8I</enzyme>
                    <enzyme>BseJI</enzyme>
                    <enzyme>BsiBI</enzyme>
                    <enzyme>BsrBRI</enzyme>
                    <enzyme>MamI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTACAAAACTTTCGCTTCTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTCTAAATTAAGGCTCACATTG</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GTCTACAAAACTTTCGCTTCTACAACGCTTACAAATTTGAACTGAAACTAACTGAAGATGTCCATCGTCGGCTCGTTTGCGTCTTCAGGACCACTACTCTCAAACGCTTCATCCTCTTCCATTACATCGTCCTTTAAATCGTTCGTAATTGGGTTGTCATAAATTTCTTCTTTTTCAAGTTGACTGTTCCGTTTCGTCGGAGGTTCTAAAATTGAGTCAATGTGAGCCTTAATTTAGAAA</canonical_amplicon>
		<polymorphic_amplicon>GTCTACAAAACTTTCGCTTCTACAACGCTTACAAATTTGAACTGAAACTAACTGAAGAWGTCCATCGTCGGCTCGTTTGCGTCTTCAGGACCACTACTCTCAAACGCTTCATCCTCTTCCATTACATCGTCCTTTAAATCGTTCGTAATTGGGTTGTCATAAATTTCTTCTTTTTCAAGTTGACTGTTCCGTTTCGTCGGAGGTTCTAAAATTGAGTCAATGTGAGCCTTAATTTAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30217</snp_id>
        <super_contig>c005200843.Contig2</super_contig>
        <contig_pos>17948</contig_pos>
        <strand></strand>
        <context>AAGAWGTCCA[T/C]CGTCGGCTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CGCTTCTACAACGCTTACAAATTTGAACTGAAACTAACTGAAGATGTCCA</left_flank>
        <right_flank>CGTCGGCTCGTTTGCGTCTTCAGGACCACTACTCTCAAACGCTTCATCCT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTGTAAAAGATTTGAAAAAGTTGTCAACTGATAAAATGTTTTTCATGATATCAGTAACATTTTATTAATTAGCAATTTTTTGATATCTCCTACAGTAACCGAGAAAAATTTGGTTAAACTTGAAAAGTTGGCGTTTTCATGCATCGTCTGACTGCCTCTTAACTTTGACCCACTCGGTAAATGTGGGCAACTTCTTCCCCAACTTTGGGCAGCTATTGTCCTAACTCCAGGCAACTTCTAGCATTTCATAGGTCAAACGCTGCCCAGCTTTAGGAGAGCTTCTACCCAGCGTTTGCCCACTTGTAGACAGCCCGCTCTGGCCCCTTCCCTTCCCGCTGTTCCCCTTCTTCCAGAATGTAAATGCGGGGGTCGTAATCAGCAACATGTGATACTGCATATTCAACGTCTGAATTACATACAGTTACAGACAACGCGTCTACAAAACTTTCGCTTCTACAACGCTTACAAATTTGAACTGAAACTAACTGAAGATGTCCATCGTCGGCTCGTTTGCGTCTTCAGGACCACTACTCTCAAACGCTTCATCCTCTTCCATTACATCGTCCTTTAAATCGTTCGTAATTGGGTTGTCATAAATTTCTTCTTTTTCAAGTTGACTGTTCCGTTTCGTCGGAGGTTCTAAAATTGAGTCAATGTGAGCCTTAATTTAGAAAAAAAATCATACCTCCTGGGTGGGATACTTCTGATGGGATTTCGTAGATTTCTCCTCTTGCCATCTGATATTCCATCTCTTAAAATGAAACATGGCAAAACTCATCCTTTTCTATGCTCACCAATGGCTTCCCGTTTTTTGTTCGCTTCACCCGATTCCACTCATCGATGACACTAATCGATGACACCTACTGTTCTCTCGTTGAAAACTGATAAAAGGATAAGAAACTGACAGTATTTGAAAAAAATTCAGAGATAATCGTAAGCAAATTCATAGAAAACGTATGAAAAATATGTTTAAAACTTATAACCGTAAAAAATGTTGCA</canonical>
            <polymorphic>CCTGTAAAAGATTTGAAAAAGTTGTCAACTGATAAAATGTTTTTCATGATATCAGTAACATTTTATTAATTAGCAATTTTTTGATATCTCCTACAGTAACCGAGAAAAATTTGGTTAAACTTGAAAAGTTGGCGTTTTCATGCATCGTCTGACTGCCTCTTAACTTTGACCCACTCGGTAAATGTGGGCAACTTCTTCCCCAACTTTGGGCAGCTATTGTCCTAACTCCAGGCAACTTCTAGCATTTCATAGGTCAAACGCTGCCCAGCTTTAGGAGAGCTTCTACCCAGCGTTTGCCCACTTGTAGACAGCCCGCTCTGGCCCCTTCCCTTCCCGCTGTTCCCCTTCTTCCAGAATGTAAATGCGGGGGTCGTAATCAGCAACATGTGATACTGCATATTCAACGTCTGAATTACATACAGTTACAGACAACGCGTCTACAAAACTTTCGCTTCTACAACGCTTACAAATTTGAACTGAAACTAACTGAAGATGTCCAYCGTCGGCTCGTTTGCGTCTTCAGGACCACTACTCTCAAACGCTTCATCCTCTTCCATTACATCGTCCTTTAAATCGTTCGTAATTGGGTTGTCATAAATTTCTTCTTTTTCAAGTTGACTGTTCCGTTTCGTCGGAGGTTCTAAAATTGAGTCAATGTGAGCCTTAATTTAGAAAAAAAATCATACCTCCTGGGTGGGATACTTCTGATGGGATTTCGTAGATTTCTCCTCTTGCCATCTGATATTCCATCTCTTAAAATGAAACATGGCAAAACTCATCCTTTTCTATGCTCACCAATGGCTTCCCGTTTTTTGTTCGCTTCACCCGATTCCACTCATCGATGACACTAATCGATGACACCTACTGTTCTCTCGTTGAAAACTGATAAAAGGATAAGAAACTGACAGTATTTGAAAAAAATTCAGAGATAATCGTAAGCAAATTCATAGAAAACGTATGAAAAATATGTTTAAAACTTATAACCGTAAAAAATGTTGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATNNNNATC</site>
                <isoschizomers>
                    <enzyme>BsaBI</enzyme>
                    <enzyme>Bse8I</enzyme>
                    <enzyme>BseJI</enzyme>
                    <enzyme>BsiBI</enzyme>
                    <enzyme>BsrBRI</enzyme>
                    <enzyme>MamI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTACAAAACTTTCGCTTCTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTCTAAATTAAGGCTCACATTG</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GTCTACAAAACTTTCGCTTCTACAACGCTTACAAATTTGAACTGAAACTAACTGAAGATGTCCATCGTCGGCTCGTTTGCGTCTTCAGGACCACTACTCTCAAACGCTTCATCCTCTTCCATTACATCGTCCTTTAAATCGTTCGTAATTGGGTTGTCATAAATTTCTTCTTTTTCAAGTTGACTGTTCCGTTTCGTCGGAGGTTCTAAAATTGAGTCAATGTGAGCCTTAATTTAGAAA</canonical_amplicon>
		<polymorphic_amplicon>GTCTACAAAACTTTCGCTTCTACAACGCTTACAAATTTGAACTGAAACTAACTGAAGATGTCCAYCGTCGGCTCGTTTGCGTCTTCAGGACCACTACTCTCAAACGCTTCATCCTCTTCCATTACATCGTCCTTTAAATCGTTCGTAATTGGGTTGTCATAAATTTCTTCTTTTTCAAGTTGACTGTTCCGTTTCGTCGGAGGTTCTAAAATTGAGTCAATGTGAGCCTTAATTTAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30218</snp_id>
        <super_contig>c005200843.Contig2</super_contig>
        <contig_pos>20970</contig_pos>
        <strand>+</strand>
        <context>ACATCGAGGA[A/G]TTTGACAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTAGCGGGGCTGGAAAAACTACACTTTTGAACGTTTTAACATCGAGGA</left_flank>
        <right_flank>TTTGACAAATTTGGATGTTCAAGGATCCATTTTGATTGATGGGAAACGAG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGTATTTTTGCATGCTGGAATTCTGGAATTCTGGAATATTGGAATTCTGGAATTCTAGAATTCTAGAATTCTAGAATTCTAGAATTCTGAATTTCTGACTACTCAAAAATTTTGCTGAAAATTTAATTTTCAGAAAAATCATGATGCTGGCCGAAATGATGACTAGCGATCATCTGGAATTGCTGAAAAATCAAGAACCTCGAATTCCGCACATATTTCCAGAGGGGTGAGTTTTTTCTGAAATTTTCAGTACTTTCCTTGTAATTTTATCACAAAAATTGCAGAATAAATCTCTACTGGTCCTCGCTAAACGTTACTGGTCCTGAAACGAAATCCACAAACTTTCTAGAAAAATTTCGAAATAATGGATCAAAAAAACGAGTAAAAGAGATATTACATAACGTTTCTGGAATGGCTGAATCTGGAAAGTTATTAGCGATAATGGGAAGTAGCGGGGCTGGAAAAACTACACTTTTGAACGTTTTAACATCGAGGAGTTTGACAAATTTGGATGTTCAAGGATCCATTTTGATTGATGGGAAACGAGCGAATAGATGGAAAATTCGAGAGGTAAGAATTTTTTTTGAATTTTTGGCAAATTTGGAAAAAATGTTTCTGATTATGAAATATATATTTTTTTTTCAAAAACTCCTTTTTTATAACCTCCAGAAGCGCACGAGAGGGCGAGGAACGGGCGGTTTTGTATACGACAAGTTGCTCGCCTTTCCTTATTGGCTGTCGTGGTGTAGTGGCTAGTGCTTTATGTTTTTGCCCACGAGGTCCGGGGTTCGAGACCGGTGGGCGACAACTTTCTTTTTATTATTTTTTGAACATGTTCAAGAATTATTAAAGACATTTTTTTGGTTTTTTTGGGATTCAGAAACCCAAAAAGTTCAAAATTTTATGATTTTTGATCTAAATTTTTCGAAAGATTCTAAAATTCTGAAATTCCAATTTCCAGATGTCCGCATTTGTCCAGCAACACGATATGTTTGTT</canonical>
            <polymorphic>TTCTGTATTTTTGCATGCTGGAATTCTGGAATTCTGGAATATTGGAATTCTGGAATTCTAGAATTCTAGAATTCTAGAATTCTAGAATTCTGAATTTCTGACTACTCAAAAATTTTGCTGAAAATTTAATTTTCAGAAAAATCATGATGCTGGCCGAAATGATGACTAGCGATCATCTGGAATTGCTGAAAAATCAAGAACCTCGAATTCCGCACATATTTCCAGAGGGGTGAGTTTTTTCTGAAATTTTCAGTACTTTCCTTGTAATTTTATCACAAAAATTGCAGAATAAATCTCTACTGGTCCTCGCTAAACGTTACTGGTCCTGAAACGAAATCCACAAACTTTCTAGAAAAATTTCGAAATAATGGATCAAAAAAACGAGTAAAAGAGATATTACATAACGTTTCTGGAATGGCTGAATCTGGAAAGTTATTAGCGATAATGGGAAGTAGCGGGGCTGGAAAAACTACACTTTTGAACGTTTTAACATCGAGGARTTTGACAAATTTGGATGTTCAAGGATCCATTTTGATTGATGGGAAACGAGCGAATAGATGGAAAATTCGAGAGGTAAGAATTTTTTTTGAATTTTTGGCAAATTTGGAAAAAATGTTTCTGATTATGAAATATATATTTTTTTTTCAAAAACTCCTTTTTTATAACCTCCAGAAGCGCACGAGAGGGCGAGGAACGGGCGGTTTTGTATACGACAAGTTGCTCGCCTTTCCTTATTGGCTGTCGTGGTGTAGTGGCTAGTGCTTTATGTTTTTGCCCACGAGGTCCGGGGTTCGAGACCGGTGGGCGACAACTTTCTTTTTATTATTTTTTGAACATGTTCAAGAATTATTAAAGACATTTTTTTGGTTTTTTTGGGATTCAGAAACCCAAAAAGTTCAAAATTTTATGATTTTTGATCTAAATTTTTCGAAAGATTCTAAAATTCTGAAATTCCAATTTCCAGATGTCCGCATTTGTCCAGCAACACGATATGTTTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACGAAATCCACAAACTTTCTA</pcr_primer_p1>
		<pcr_primer_p2>TACCTCTCGAATTTTCCATCTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AACGAAATCCACAAACTTTCTAGAAAAATTTCGAAATAATGGATCAAAAAAACGAGTAAAAGAGATATTACATAACGTTTCTGGAATGGCTGAATCTGGAAAGTTATTAGCGATAATGGGAAGTAGCGGGGCTGGAAAAACTACACTTTTGAACGTTTTAACATCGAGGAGTTTGACAAATTTGGATGTTCAAGGATCCATTTTGATTGATGGGAAACGAGCGAATAGATGGAAAATTCGAGAGGTA</canonical_amplicon>
		<polymorphic_amplicon>AACGAAATCCACAAACTTTCTAGAAAAATTTCGAAATAATGGATCAAAAAAACGAGTAAAAGAGATATTACATAACGTTTCTGGAATGGCTGAATCTGGAAAGTTATTAGCGATAATGGGAAGTAGCGGGGCTGGAAAAACTACACTTTTGAACGTTTTAACATCGAGGARTTTGACAAATTTGGATGTTCAAGGATCCATTTTGATTGATGGGAAACGAGCGAATAGATGGAAAATTCGAGAGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30219</snp_id>
        <super_contig>c005200843.Contig2</super_contig>
        <contig_pos>21104</contig_pos>
        <strand>+</strand>
        <context>TATGAAATAT[A/T]TWTTTTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTGAATTTTTGGCAAATTTGGAAAAAATGTTTCTGATTATGAAATAT</left_flank>
        <right_flank>TATTTTTTTTTCAAAAACTCCTTTTTTATAACCTCCAGAAGCGCACGAGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAAAATCATGATGCTGGCCGAAATGATGACTAGCGATCATCTGGAATTGCTGAAAAATCAAGAACCTCGAATTCCGCACATATTTCCAGAGGGGTGAGTTTTTTCTGAAATTTTCAGTACTTTCCTTGTAATTTTATCACAAAAATTGCAGAATAAATCTCTACTGGTCCTCGCTAAACGTTACTGGTCCTGAAACGAAATCCACAAACTTTCTAGAAAAATTTCGAAATAATGGATCAAAAAAACGAGTAAAAGAGATATTACATAACGTTTCTGGAATGGCTGAATCTGGAAAGTTATTAGCGATAATGGGAAGTAGCGGGGCTGGAAAAACTACACTTTTGAACGTTTTAACATCGAGGAGTTTGACAAATTTGGATGTTCAAGGATCCATTTTGATTGATGGGAAACGAGCGAATAGATGGAAAATTCGAGAGGTAAGAATTTTTTTTGAATTTTTGGCAAATTTGGAAAAAATGTTTCTGATTATGAAATATATATTTTTTTTTCAAAAACTCCTTTTTTATAACCTCCAGAAGCGCACGAGAGGGCGAGGAACGGGCGGTTTTGTATACGACAAGTTGCTCGCCTTTCCTTATTGGCTGTCGTGGTGTAGTGGCTAGTGCTTTATGTTTTTGCCCACGAGGTCCGGGGTTCGAGACCGGTGGGCGACAACTTTCTTTTTATTATTTTTTGAACATGTTCAAGAATTATTAAAGACATTTTTTTGGTTTTTTTGGGATTCAGAAACCCAAAAAGTTCAAAATTTTATGATTTTTGATCTAAATTTTTCGAAAGATTCTAAAATTCTGAAATTCCAATTTCCAGATGTCCGCATTTGTCCAGCAACACGATATGTTTGTTGGAACAATGACTGCTCGTGAGCATCTTCAATTCATGGCACGCCTTCGGATGGGTTCAGAATACTATTCAGAAGAAGAACGAGAATCTCGTGTGGACCAGGTTCTAACCCAAATGGGACTACAAAAGTGTGCAGA</canonical>
            <polymorphic>AGAAAAATCATGATGCTGGCCGAAATGATGACTAGCGATCATCTGGAATTGCTGAAAAATCAAGAACCTCGAATTCCGCACATATTTCCAGAGGGGTGAGTTTTTTCTGAAATTTTCAGTACTTTCCTTGTAATTTTATCACAAAAATTGCAGAATAAATCTCTACTGGTCCTCGCTAAACGTTACTGGTCCTGAAACGAAATCCACAAACTTTCTAGAAAAATTTCGAAATAATGGATCAAAAAAACGAGTAAAAGAGATATTACATAACGTTTCTGGAATGGCTGAATCTGGAAAGTTATTAGCGATAATGGGAAGTAGCGGGGCTGGAAAAACTACACTTTTGAACGTTTTAACATCGAGGAGTTTGACAAATTTGGATGTTCAAGGATCCATTTTGATTGATGGGAAACGAGCGAATAGATGGAAAATTCGAGAGGTAAGAATTTTTTTTGAATTTTTGGCAAATTTGGAAAAAATGTTTCTGATTATGAAATATWTATTTTTTTTTCAAAAACTCCTTTTTTATAACCTCCAGAAGCGCACGAGAGGGCGAGGAACGGGCGGTTTTGTATACGACAAGTTGCTCGCCTTTCCTTATTGGCTGTCGTGGTGTAGTGGCTAGTGCTTTATGTTTTTGCCCACGAGGTCCGGGGTTCGAGACCGGTGGGCGACAACTTTCTTTTTATTATTTTTTGAACATGTTCAAGAATTATTAAAGACATTTTTTTGGTTTTTTTGGGATTCAGAAACCCAAAAAGTTCAAAATTTTATGATTTTTGATCTAAATTTTTCGAAAGATTCTAAAATTCTGAAATTCCAATTTCCAGATGTCCGCATTTGTCCAGCAACACGATATGTTTGTTGGAACAATGACTGCTCGTGAGCATCTTCAATTCATGGCACGCCTTCGGATGGGTTCAGAATACTATTCAGAAGAAGAACGAGAATCTCGTGTGGACCAGGTTCTAACCCAAATGGGACTACAAAAGTGTGCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAATTCGAGAGGTAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>GAACTTTTTGGGTTTCTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>339</pcr_amplicon_size>
		<canonical_amplicon>GGAAAATTCGAGAGGTAAGAATTTTTTTTGAATTTTTGGCAAATTTGGAAAAAATGTTTCTGATTATGAAATATATATTTTTTTTTCAAAAACTCCTTTTTTATAACCTCCAGAAGCGCACGAGAGGGCGAGGAACGGGCGGTTTTGTATACGACAAGTTGCTCGCCTTTCCTTATTGGCTGTCGTGGTGTAGTGGCTAGTGCTTTATGTTTTTGCCCACGAGGTCCGGGGTTCGAGACCGGTGGGCGACAACTTTCTTTTTATTATTTTTTGAACATGTTCAAGAATTATTAAAGACATTTTTTTGGTTTTTTTGGGATTCAGAAACCCAAAAAGTTC</canonical_amplicon>
		<polymorphic_amplicon>GGAAAATTCGAGAGGTAAGAATTTTTTTTGAATTTTTGGCAAATTTGGAAAAAATGTTTCTGATTATGAAATATWTATTTTTTTTTCAAAAACTCCTTTTTTATAACCTCCAGAAGCGCACGAGAGGGCGAGGAACGGGCGGTTTTGTATACGACAAGTTGCTCGCCTTTCCTTATTGGCTGTCGTGGTGTAGTGGCTAGTGCTTTATGTTTTTGCCCACGAGGTCCGGGGTTCGAGACCGGTGGGCGACAACTTTCTTTTTATTATTTTTTGAACATGTTCAAGAATTATTAAAGACATTTTTTTGGTTTTTTTGGGATTCAGAAACCCAAAAAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30220</snp_id>
        <super_contig>c005200843.Contig2</super_contig>
        <contig_pos>21106</contig_pos>
        <strand>+</strand>
        <context>TGAAATATWT[A/T]TTTTTTTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGAATTTTTGGCAAATTTGGAAAAAATGTTTCTGATTATGAAATATAT</left_flank>
        <right_flank>TTTTTTTTTCAAAAACTCCTTTTTTATAACCTCCAGAAGCGCACGAGAGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATCATGATGCTGGCCGAAATGATGACTAGCGATCATCTGGAATTGCTGAAAAATCAAGAACCTCGAATTCCGCACATATTTCCAGAGGGGTGAGTTTTTTCTGAAATTTTCAGTACTTTCCTTGTAATTTTATCACAAAAATTGCAGAATAAATCTCTACTGGTCCTCGCTAAACGTTACTGGTCCTGAAACGAAATCCACAAACTTTCTAGAAAAATTTCGAAATAATGGATCAAAAAAACGAGTAAAAGAGATATTACATAACGTTTCTGGAATGGCTGAATCTGGAAAGTTATTAGCGATAATGGGAAGTAGCGGGGCTGGAAAAACTACACTTTTGAACGTTTTAACATCGAGGAGTTTGACAAATTTGGATGTTCAAGGATCCATTTTGATTGATGGGAAACGAGCGAATAGATGGAAAATTCGAGAGGTAAGAATTTTTTTTGAATTTTTGGCAAATTTGGAAAAAATGTTTCTGATTATGAAATATATATTTTTTTTTCAAAAACTCCTTTTTTATAACCTCCAGAAGCGCACGAGAGGGCGAGGAACGGGCGGTTTTGTATACGACAAGTTGCTCGCCTTTCCTTATTGGCTGTCGTGGTGTAGTGGCTAGTGCTTTATGTTTTTGCCCACGAGGTCCGGGGTTCGAGACCGGTGGGCGACAACTTTCTTTTTATTATTTTTTGAACATGTTCAAGAATTATTAAAGACATTTTTTTGGTTTTTTTGGGATTCAGAAACCCAAAAAGTTCAAAATTTTATGATTTTTGATCTAAATTTTTCGAAAGATTCTAAAATTCTGAAATTCCAATTTCCAGATGTCCGCATTTGTCCAGCAACACGATATGTTTGTTGGAACAATGACTGCTCGTGAGCATCTTCAATTCATGGCACGCCTTCGGATGGGTTCAGAATACTATTCAGAAGAAGAACGAGAATCTCGTGTGGACCAGGTTCTAACCCAAATGGGACTACAAAAGTGTGCAGATA</canonical>
            <polymorphic>AAAAATCATGATGCTGGCCGAAATGATGACTAGCGATCATCTGGAATTGCTGAAAAATCAAGAACCTCGAATTCCGCACATATTTCCAGAGGGGTGAGTTTTTTCTGAAATTTTCAGTACTTTCCTTGTAATTTTATCACAAAAATTGCAGAATAAATCTCTACTGGTCCTCGCTAAACGTTACTGGTCCTGAAACGAAATCCACAAACTTTCTAGAAAAATTTCGAAATAATGGATCAAAAAAACGAGTAAAAGAGATATTACATAACGTTTCTGGAATGGCTGAATCTGGAAAGTTATTAGCGATAATGGGAAGTAGCGGGGCTGGAAAAACTACACTTTTGAACGTTTTAACATCGAGGAGTTTGACAAATTTGGATGTTCAAGGATCCATTTTGATTGATGGGAAACGAGCGAATAGATGGAAAATTCGAGAGGTAAGAATTTTTTTTGAATTTTTGGCAAATTTGGAAAAAATGTTTCTGATTATGAAATATATWTTTTTTTTTCAAAAACTCCTTTTTTATAACCTCCAGAAGCGCACGAGAGGGCGAGGAACGGGCGGTTTTGTATACGACAAGTTGCTCGCCTTTCCTTATTGGCTGTCGTGGTGTAGTGGCTAGTGCTTTATGTTTTTGCCCACGAGGTCCGGGGTTCGAGACCGGTGGGCGACAACTTTCTTTTTATTATTTTTTGAACATGTTCAAGAATTATTAAAGACATTTTTTTGGTTTTTTTGGGATTCAGAAACCCAAAAAGTTCAAAATTTTATGATTTTTGATCTAAATTTTTCGAAAGATTCTAAAATTCTGAAATTCCAATTTCCAGATGTCCGCATTTGTCCAGCAACACGATATGTTTGTTGGAACAATGACTGCTCGTGAGCATCTTCAATTCATGGCACGCCTTCGGATGGGTTCAGAATACTATTCAGAAGAAGAACGAGAATCTCGTGTGGACCAGGTTCTAACCCAAATGGGACTACAAAAGTGTGCAGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAATTCGAGAGGTAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>GAACTTTTTGGGTTTCTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>339</pcr_amplicon_size>
		<canonical_amplicon>GGAAAATTCGAGAGGTAAGAATTTTTTTTGAATTTTTGGCAAATTTGGAAAAAATGTTTCTGATTATGAAATATATATTTTTTTTTCAAAAACTCCTTTTTTATAACCTCCAGAAGCGCACGAGAGGGCGAGGAACGGGCGGTTTTGTATACGACAAGTTGCTCGCCTTTCCTTATTGGCTGTCGTGGTGTAGTGGCTAGTGCTTTATGTTTTTGCCCACGAGGTCCGGGGTTCGAGACCGGTGGGCGACAACTTTCTTTTTATTATTTTTTGAACATGTTCAAGAATTATTAAAGACATTTTTTTGGTTTTTTTGGGATTCAGAAACCCAAAAAGTTC</canonical_amplicon>
		<polymorphic_amplicon>GGAAAATTCGAGAGGTAAGAATTTTTTTTGAATTTTTGGCAAATTTGGAAAAAATGTTTCTGATTATGAAATATATWTTTTTTTTTCAAAAACTCCTTTTTTATAACCTCCAGAAGCGCACGAGAGGGCGAGGAACGGGCGGTTTTGTATACGACAAGTTGCTCGCCTTTCCTTATTGGCTGTCGTGGTGTAGTGGCTAGTGCTTTATGTTTTTGCCCACGAGGTCCGGGGTTCGAGACCGGTGGGCGACAACTTTCTTTTTATTATTTTTTGAACATGTTCAAGAATTATTAAAGACATTTTTTTGGTTTTTTTGGGATTCAGAAACCCAAAAAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30221</snp_id>
        <super_contig>c005200843.Contig2</super_contig>
        <contig_pos>21208</contig_pos>
        <strand></strand>
        <context>ttccttattg[G/T]ctgtcgtggt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGAGGAACGGGCGGTTTTGTATACGACAAGTTGCTCGCCTTTCCTTATTG</left_flank>
        <right_flank>CTGTCGTGGTGTAGTGGCTAGTGCTTTATGTTTTTGCCCACGAGGTCCGG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGAAATTTTCAGTACTTTCCTTGTAATTTTATCACAAAAATTGCAGAATAAATCTCTACTGGTCCTCGCTAAACGTTACTGGTCCTGAAACGAAATCCACAAACTTTCTAGAAAAATTTCGAAATAATGGATCAAAAAAACGAGTAAAAGAGATATTACATAACGTTTCTGGAATGGCTGAATCTGGAAAGTTATTAGCGATAATGGGAAGTAGCGGGGCTGGAAAAACTACACTTTTGAACGTTTTAACATCGAGGAGTTTGACAAATTTGGATGTTCAAGGATCCATTTTGATTGATGGGAAACGAGCGAATAGATGGAAAATTCGAGAGGTAAGAATTTTTTTTGAATTTTTGGCAAATTTGGAAAAAATGTTTCTGATTATGAAATATATATTTTTTTTTCAAAAACTCCTTTTTTATAACCTCCAGAAGCGCACGAGAGGGCGAGGAACGGGCGGTTTTGTATACGACAAGTTGCTCGCCTTTCCTTATTGGCTGTCGTGGTGTAGTGGCTAGTGCTTTATGTTTTTGCCCACGAGGTCCGGGGTTCGAGACCGGTGGGCGACAACTTTCTTTTTATTATTTTTTGAACATGTTCAAGAATTATTAAAGACATTTTTTTGGTTTTTTTGGGATTCAGAAACCCAAAAAGTTCAAAATTTTATGATTTTTGATCTAAATTTTTCGAAAGATTCTAAAATTCTGAAATTCCAATTTCCAGATGTCCGCATTTGTCCAGCAACACGATATGTTTGTTGGAACAATGACTGCTCGTGAGCATCTTCAATTCATGGCACGCCTTCGGATGGGTTCAGAATACTATTCAGAAGAAGAACGAGAATCTCGTGTGGACCAGGTTCTAACCCAAATGGGACTACAAAAGTGTGCAGATACAGTAATCGGAATTCCAAATCAATTGAAGGACTCTCATGTGGAGAGAAGAAGAGATTATCGTTTGCTTCTGAGATTCTGACATGTCCAAAAATTCTATTTTG</canonical>
            <polymorphic>TTCTGAAATTTTCAGTACTTTCCTTGTAATTTTATCACAAAAATTGCAGAATAAATCTCTACTGGTCCTCGCTAAACGTTACTGGTCCTGAAACGAAATCCACAAACTTTCTAGAAAAATTTCGAAATAATGGATCAAAAAAACGAGTAAAAGAGATATTACATAACGTTTCTGGAATGGCTGAATCTGGAAAGTTATTAGCGATAATGGGAAGTAGCGGGGCTGGAAAAACTACACTTTTGAACGTTTTAACATCGAGGAGTTTGACAAATTTGGATGTTCAAGGATCCATTTTGATTGATGGGAAACGAGCGAATAGATGGAAAATTCGAGAGGTAAGAATTTTTTTTGAATTTTTGGCAAATTTGGAAAAAATGTTTCTGATTATGAAATATATATTTTTTTTTCAAAAACTCCTTTTTTATAACCTCCAGAAGCGCACGAGAGGGCGAGGAACGGGCGGTTTTGTATACGACAAGTTGCTCGCCTTTCCTTATTGKCTGTCGTGGTGTAGTGGCTAGTGCTTTATGTTTTTGCCCACGAGGTCCGGGGTTCGAGACCGGTGGGCGACAACTTTCTTTTTATTATTTTTTGAACATGTTCAAGAATTATTAAAGACATTTTTTTGGTTTTTTTGGGATTCAGAAACCCAAAAAGTTCAAAATTTTATGATTTTTGATCTAAATTTTTCGAAAGATTCTAAAATTCTGAAATTCCAATTTCCAGATGTCCGCATTTGTCCAGCAACACGATATGTTTGTTGGAACAATGACTGCTCGTGAGCATCTTCAATTCATGGCACGCCTTCGGATGGGTTCAGAATACTATTCAGAAGAAGAACGAGAATCTCGTGTGGACCAGGTTCTAACCCAAATGGGACTACAAAAGTGTGCAGATACAGTAATCGGAATTCCAAATCAATTGAAGGACTCTCATGTGGAGAGAAGAAGAGATTATCGTTTGCTTCTGAGATTCTGACATGTCCAAAAATTCTATTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>483 278 180 42 17</canonical_bands>
                <polymorphic_bands>483 295 180 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAAATTCGAGAGGTAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>GAACTTTTTGGGTTTCTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>339</pcr_amplicon_size>
		<canonical_amplicon>GGAAAATTCGAGAGGTAAGAATTTTTTTTGAATTTTTGGCAAATTTGGAAAAAATGTTTCTGATTATGAAATATATATTTTTTTTTCAAAAACTCCTTTTTTATAACCTCCAGAAGCGCACGAGAGGGCGAGGAACGGGCGGTTTTGTATACGACAAGTTGCTCGCCTTTCCTTATTGGCTGTCGTGGTGTAGTGGCTAGTGCTTTATGTTTTTGCCCACGAGGTCCGGGGTTCGAGACCGGTGGGCGACAACTTTCTTTTTATTATTTTTTGAACATGTTCAAGAATTATTAAAGACATTTTTTTGGTTTTTTTGGGATTCAGAAACCCAAAAAGTTC</canonical_amplicon>
		<polymorphic_amplicon>GGAAAATTCGAGAGGTAAGAATTTTTTTTGAATTTTTGGCAAATTTGGAAAAAATGTTTCTGATTATGAAATATATATTTTTTTTTCAAAAACTCCTTTTTTATAACCTCCAGAAGCGCACGAGAGGGCGAGGAACGGGCGGTTTTGTATACGACAAGTTGCTCGCCTTTCCTTATTGKCTGTCGTGGTGTAGTGGCTAGTGCTTTATGTTTTTGCCCACGAGGTCCGGGGTTCGAGACCGGTGGGCGACAACTTTCTTTTTATTATTTTTTGAACATGTTCAAGAATTATTAAAGACATTTTTTTGGTTTTTTTGGGATTCAGAAACCCAAAAAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30222</snp_id>
        <super_contig>c005200843.Contig2</super_contig>
        <contig_pos>21295</contig_pos>
        <strand></strand>
        <context>tctttttatt[A/G]ttttttgaac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCACGAGGTCCGGGGTTCGAGACCGGTGGGCGACAACTTTCTTTTTATT</left_flank>
        <right_flank>TTTTTTGAACATGTTCAAGAATTATTAAAGACATTTTTTTGGTTTTTTTG</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAAACGAAATCCACAAACTTTCTAGAAAAATTTCGAAATAATGGATCAAAAAAACGAGTAAAAGAGATATTACATAACGTTTCTGGAATGGCTGAATCTGGAAAGTTATTAGCGATAATGGGAAGTAGCGGGGCTGGAAAAACTACACTTTTGAACGTTTTAACATCGAGGAGTTTGACAAATTTGGATGTTCAAGGATCCATTTTGATTGATGGGAAACGAGCGAATAGATGGAAAATTCGAGAGGTAAGAATTTTTTTTGAATTTTTGGCAAATTTGGAAAAAATGTTTCTGATTATGAAATATATATTTTTTTTTCAAAAACTCCTTTTTTATAACCTCCAGAAGCGCACGAGAGGGCGAGGAACGGGCGGTTTTGTATACGACAAGTTGCTCGCCTTTCCTTATTGGCTGTCGTGGTGTAGTGGCTAGTGCTTTATGTTTTTGCCCACGAGGTCCGGGGTTCGAGACCGGTGGGCGACAACTTTCTTTTTATTATTTTTTGAACATGTTCAAGAATTATTAAAGACATTTTTTTGGTTTTTTTGGGATTCAGAAACCCAAAAAGTTCAAAATTTTATGATTTTTGATCTAAATTTTTCGAAAGATTCTAAAATTCTGAAATTCCAATTTCCAGATGTCCGCATTTGTCCAGCAACACGATATGTTTGTTGGAACAATGACTGCTCGTGAGCATCTTCAATTCATGGCACGCCTTCGGATGGGTTCAGAATACTATTCAGAAGAAGAACGAGAATCTCGTGTGGACCAGGTTCTAACCCAAATGGGACTACAAAAGTGTGCAGATACAGTAATCGGAATTCCAAATCAATTGAAGGACTCTCATGTGGAGAGAAGAAGAGATTATCGTTTGCTTCTGAGATTCTGACATGTCCAAAAATTCTATTTTGTGATGAACCGACGTCTGGATTGGATGCTTTCATGGCTGGTACTGTTTTTAAAGGCACATATCTCAAAAACTACAGTAGCTACCAAAT</canonical>
            <polymorphic>CTGAAACGAAATCCACAAACTTTCTAGAAAAATTTCGAAATAATGGATCAAAAAAACGAGTAAAAGAGATATTACATAACGTTTCTGGAATGGCTGAATCTGGAAAGTTATTAGCGATAATGGGAAGTAGCGGGGCTGGAAAAACTACACTTTTGAACGTTTTAACATCGAGGAGTTTGACAAATTTGGATGTTCAAGGATCCATTTTGATTGATGGGAAACGAGCGAATAGATGGAAAATTCGAGAGGTAAGAATTTTTTTTGAATTTTTGGCAAATTTGGAAAAAATGTTTCTGATTATGAAATATATATTTTTTTTTCAAAAACTCCTTTTTTATAACCTCCAGAAGCGCACGAGAGGGCGAGGAACGGGCGGTTTTGTATACGACAAGTTGCTCGCCTTTCCTTATTGGCTGTCGTGGTGTAGTGGCTAGTGCTTTATGTTTTTGCCCACGAGGTCCGGGGTTCGAGACCGGTGGGCGACAACTTTCTTTTTATTRTTTTTTGAACATGTTCAAGAATTATTAAAGACATTTTTTTGGTTTTTTTGGGATTCAGAAACCCAAAAAGTTCAAAATTTTATGATTTTTGATCTAAATTTTTCGAAAGATTCTAAAATTCTGAAATTCCAATTTCCAGATGTCCGCATTTGTCCAGCAACACGATATGTTTGTTGGAACAATGACTGCTCGTGAGCATCTTCAATTCATGGCACGCCTTCGGATGGGTTCAGAATACTATTCAGAAGAAGAACGAGAATCTCGTGTGGACCAGGTTCTAACCCAAATGGGACTACAAAAGTGTGCAGATACAGTAATCGGAATTCCAAATCAATTGAAGGACTCTCATGTGGAGAGAAGAAGAGATTATCGTTTGCTTCTGAGATTCTGACATGTCCAAAAATTCTATTTTGTGATGAACCGACGTCTGGATTGGATGCTTTCATGGCTGGTACTGTTTTTAAAGGCACATATCTCAAAAACTACAGTAGCTACCAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAATTCGAGAGGTAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>GAACTTTTTGGGTTTCTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>339</pcr_amplicon_size>
		<canonical_amplicon>GGAAAATTCGAGAGGTAAGAATTTTTTTTGAATTTTTGGCAAATTTGGAAAAAATGTTTCTGATTATGAAATATATATTTTTTTTTCAAAAACTCCTTTTTTATAACCTCCAGAAGCGCACGAGAGGGCGAGGAACGGGCGGTTTTGTATACGACAAGTTGCTCGCCTTTCCTTATTGGCTGTCGTGGTGTAGTGGCTAGTGCTTTATGTTTTTGCCCACGAGGTCCGGGGTTCGAGACCGGTGGGCGACAACTTTCTTTTTATTATTTTTTGAACATGTTCAAGAATTATTAAAGACATTTTTTTGGTTTTTTTGGGATTCAGAAACCCAAAAAGTTC</canonical_amplicon>
		<polymorphic_amplicon>GGAAAATTCGAGAGGTAAGAATTTTTTTTGAATTTTTGGCAAATTTGGAAAAAATGTTTCTGATTATGAAATATATATTTTTTTTTCAAAAACTCCTTTTTTATAACCTCCAGAAGCGCACGAGAGGGCGAGGAACGGGCGGTTTTGTATACGACAAGTTGCTCGCCTTTCCTTATTGGCTGTCGTGGTGTAGTGGCTAGTGCTTTATGTTTTTGCCCACGAGGTCCGGGGTTCGAGACCGGTGGGCGACAACTTTCTTTTTATTRTTTTTTGAACATGTTCAAGAATTATTAAAGACATTTTTTTGGTTTTTTTGGGATTCAGAAACCCAAAAAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30223</snp_id>
        <super_contig>c005200843.Contig2</super_contig>
        <contig_pos>21323</contig_pos>
        <strand></strand>
        <context>agaattatta[A/C]agacattttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGGCGACAACTTTCTTTTTATTATTTTTTGAACATGTTCAAGAATTATTA</left_flank>
        <right_flank>AGACATTTTTTTGGTTTTTTTGGGATTCAGAAACCCAAAAAGTTCAAAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATTTCGAAATAATGGATCAAAAAAACGAGTAAAAGAGATATTACATAACGTTTCTGGAATGGCTGAATCTGGAAAGTTATTAGCGATAATGGGAAGTAGCGGGGCTGGAAAAACTACACTTTTGAACGTTTTAACATCGAGGAGTTTGACAAATTTGGATGTTCAAGGATCCATTTTGATTGATGGGAAACGAGCGAATAGATGGAAAATTCGAGAGGTAAGAATTTTTTTTGAATTTTTGGCAAATTTGGAAAAAATGTTTCTGATTATGAAATATATATTTTTTTTTCAAAAACTCCTTTTTTATAACCTCCAGAAGCGCACGAGAGGGCGAGGAACGGGCGGTTTTGTATACGACAAGTTGCTCGCCTTTCCTTATTGGCTGTCGTGGTGTAGTGGCTAGTGCTTTATGTTTTTGCCCACGAGGTCCGGGGTTCGAGACCGGTGGGCGACAACTTTCTTTTTATTATTTTTTGAACATGTTCAAGAATTATTAAAGACATTTTTTTGGTTTTTTTGGGATTCAGAAACCCAAAAAGTTCAAAATTTTATGATTTTTGATCTAAATTTTTCGAAAGATTCTAAAATTCTGAAATTCCAATTTCCAGATGTCCGCATTTGTCCAGCAACACGATATGTTTGTTGGAACAATGACTGCTCGTGAGCATCTTCAATTCATGGCACGCCTTCGGATGGGTTCAGAATACTATTCAGAAGAAGAACGAGAATCTCGTGTGGACCAGGTTCTAACCCAAATGGGACTACAAAAGTGTGCAGATACAGTAATCGGAATTCCAAATCAATTGAAGGACTCTCATGTGGAGAGAAGAAGAGATTATCGTTTGCTTCTGAGATTCTGACATGTCCAAAAATTCTATTTTGTGATGAACCGACGTCTGGATTGGATGCTTTCATGGCTGGTACTGTTTTTAAAGGCACATATCTCAAAAACTACAGTAGCTACCAAATAAGGTGTCAATTAATAAAATTTAAAAAA</canonical>
            <polymorphic>AAAATTTCGAAATAATGGATCAAAAAAACGAGTAAAAGAGATATTACATAACGTTTCTGGAATGGCTGAATCTGGAAAGTTATTAGCGATAATGGGAAGTAGCGGGGCTGGAAAAACTACACTTTTGAACGTTTTAACATCGAGGAGTTTGACAAATTTGGATGTTCAAGGATCCATTTTGATTGATGGGAAACGAGCGAATAGATGGAAAATTCGAGAGGTAAGAATTTTTTTTGAATTTTTGGCAAATTTGGAAAAAATGTTTCTGATTATGAAATATATATTTTTTTTTCAAAAACTCCTTTTTTATAACCTCCAGAAGCGCACGAGAGGGCGAGGAACGGGCGGTTTTGTATACGACAAGTTGCTCGCCTTTCCTTATTGGCTGTCGTGGTGTAGTGGCTAGTGCTTTATGTTTTTGCCCACGAGGTCCGGGGTTCGAGACCGGTGGGCGACAACTTTCTTTTTATTATTTTTTGAACATGTTCAAGAATTATTAMAGACATTTTTTTGGTTTTTTTGGGATTCAGAAACCCAAAAAGTTCAAAATTTTATGATTTTTGATCTAAATTTTTCGAAAGATTCTAAAATTCTGAAATTCCAATTTCCAGATGTCCGCATTTGTCCAGCAACACGATATGTTTGTTGGAACAATGACTGCTCGTGAGCATCTTCAATTCATGGCACGCCTTCGGATGGGTTCAGAATACTATTCAGAAGAAGAACGAGAATCTCGTGTGGACCAGGTTCTAACCCAAATGGGACTACAAAAGTGTGCAGATACAGTAATCGGAATTCCAAATCAATTGAAGGACTCTCATGTGGAGAGAAGAAGAGATTATCGTTTGCTTCTGAGATTCTGACATGTCCAAAAATTCTATTTTGTGATGAACCGACGTCTGGATTGGATGCTTTCATGGCTGGTACTGTTTTTAAAGGCACATATCTCAAAAACTACAGTAGCTACCAAATAAGGTGTCAATTAATAAAATTTAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>436 363 134 50 10 7</canonical_bands>
                <polymorphic_bands>799 134 50 10 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAAATTCGAGAGGTAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>AACATATCGTGTTGCTGGAC</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>GGAAAATTCGAGAGGTAAGAATTTTTTTTGAATTTTTGGCAAATTTGGAAAAAATGTTTCTGATTATGAAATATATATTTTTTTTTCAAAAACTCCTTTTTTATAACCTCCAGAAGCGCACGAGAGGGCGAGGAACGGGCGGTTTTGTATACGACAAGTTGCTCGCCTTTCCTTATTGGCTGTCGTGGTGTAGTGGCTAGTGCTTTATGTTTTTGCCCACGAGGTCCGGGGTTCGAGACCGGTGGGCGACAACTTTCTTTTTATTATTTTTTGAACATGTTCAAGAATTATTAAAGACATTTTTTTGGTTTTTTTGGGATTCAGAAACCCAAAAAGTTCAAAATTTTATGATTTTTGATCTAAATTTTTCGAAAGATTCTAAAATTCTGAAATTCCAATTTCCAGATGTCCGCATTTGTCCAGCAACACGATATGTT</canonical_amplicon>
		<polymorphic_amplicon>GGAAAATTCGAGAGGTAAGAATTTTTTTTGAATTTTTGGCAAATTTGGAAAAAATGTTTCTGATTATGAAATATATATTTTTTTTTCAAAAACTCCTTTTTTATAACCTCCAGAAGCGCACGAGAGGGCGAGGAACGGGCGGTTTTGTATACGACAAGTTGCTCGCCTTTCCTTATTGGCTGTCGTGGTGTAGTGGCTAGTGCTTTATGTTTTTGCCCACGAGGTCCGGGGTTCGAGACCGGTGGGCGACAACTTTCTTTTTATTATTTTTTGAACATGTTCAAGAATTATTAMAGACATTTTTTTGGTTTTTTTGGGATTCAGAAACCCAAAAAGTTCAAAATTTTATGATTTTTGATCTAAATTTTTCGAAAGATTCTAAAATTCTGAAATTCCAATTTCCAGATGTCCGCATTTGTCCAGCAACACGATATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30224</snp_id>
        <super_contig>c005201060.Contig1</super_contig>
        <contig_pos>14207</contig_pos>
        <strand>+</strand>
        <context>ACTCAGCCAT[A/T]TCTYTGCTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTAGGTATCTTAAAAATCAAAAAATGGGATTTTTGAGAGACTCAGCCAT</left_flank>
        <right_flank>TCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAATTTTAATTCG</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAAACTGAAAAATCTGATAATACATTCTAACTTCTCAATACAAAAAAACTTCGAATTCAGAAAAATTGTCGAAATTCCAAATTTTTTGCAATAAGCGAGAACTTTAATTATTCTAATTTCCCAGTTCTCGAGCTTCAATTCAATGCAGAAATCAACTTTCTAGCTGTTCTAGGAGCCGAGATACAGACGATTGAAATTTCCACTGTCTGCGTCTCGCCGACGGTTAGAGAAGCAGTGTGTCTCGCCGTCTGCGTCTCTCCCGAAACTTCAAATTGCTGTATCTCGGCTTGTAGAAGGGCTGGGAACGTGGTTCTTTTTGTATTTTGTATATTGTTGAACTTCCTATCTTCTCCAAGATATTCGAGTTCAGAATTCGGATCTCTTGATAGCTTACAAGAAGAGACATGGAAGTTTAGACGCTCTAGCTGTCTAATTTAGAATCTCAATCCTTAGGTATCTTAAAAATCAAAAAATGGGATTTTTGAGAGACTCAGCCATTTCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAATTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAAATGAGAATTTCAGAGAAATGAAGAAAACATAATTAAAAAATCCGAATTTCATAATAACTCCAAAATTCTAATTTTTCAGGCAAACTTCACGGACCAACTGGAAATCTGGGTGTTTGGTGGAGTCAGGATTCTCAGAGAAAATTCAAAACTCGTGAGCAATGTTTCATCAAACAGTACGCCGGATTGATGGATTCGCATGATGTAACTTTTTTTTTAATTCAGAATTTTCTAAAAACTGTGTTTTTTCAGATGAACGCCGCCAAAGAAGGCCTCTACGAGAATATTGCCGATCATGTGGGACTGAAAGTGGCTTATGAGGTAGATTTTTTGTTTGAAAATTTTAAGAAATGTCAAAACATAGAAGAGAGAAATTGATTTCAGCCAACAACC</canonical>
            <polymorphic>CTAAACTGAAAAATCTGATAATACATTCTAACTTCTCAATACAAAAAAACTTCGAATTCAGAAAAATTGTCGAAATTCCAAATTTTTTGCAATAAGCGAGAACTTTAATTATTCTAATTTCCCAGTTCTCGAGCTTCAATTCAATGCAGAAATCAACTTTCTAGCTGTTCTAGGAGCCGAGATACAGACGATTGAAATTTCCACTGTCTGCGTCTCGCCGACGGTTAGAGAAGCAGTGTGTCTCGCCGTCTGCGTCTCTCCCGAAACTTCAAATTGCTGTATCTCGGCTTGTAGAAGGGCTGGGAACGTGGTTCTTTTTGTATTTTGTATATTGTTGAACTTCCTATCTTCTCCAAGATATTCGAGTTCAGAATTCGGATCTCTTGATAGCTTACAAGAAGAGACATGGAAGTTTAGACGCTCTAGCTGTCTAATTTAGAATCTCAATCCTTAGGTATCTTAAAAATCAAAAAATGGGATTTTTGAGAGACTCAGCCATWTCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAATTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAAATGAGAATTTCAGAGAAATGAAGAAAACATAATTAAAAAATCCGAATTTCATAATAACTCCAAAATTCTAATTTTTCAGGCAAACTTCACGGACCAACTGGAAATCTGGGTGTTTGGTGGAGTCAGGATTCTCAGAGAAAATTCAAAACTCGTGAGCAATGTTTCATCAAACAGTACGCCGGATTGATGGATTCGCATGATGTAACTTTTTTTTTAATTCAGAATTTTCTAAAAACTGTGTTTTTTCAGATGAACGCCGCCAAAGAAGGCCTCTACGAGAATATTGCCGATCATGTGGGACTGAAAGTGGCTTATGAGGTAGATTTTTTGTTTGAAAATTTTAAGAAATGTCAAAACATAGAAGAGAGAAATTGATTTCAGCCAACAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACAAGAAGAGACATGGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTTCATTTCTCTGAAATTCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTACAAGAAGAGACATGGAAGTTTAGACGCTCTAGCTGTCTAATTTAGAATCTCAATCCTTAGGTATCTTAAAAATCAAAAAATGGGATTTTTGAGAGACTCAGCCATTTCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAATTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAAATGAGAATTTCAGAGAAATGAAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTACAAGAAGAGACATGGAAGTTTAGACGCTCTAGCTGTCTAATTTAGAATCTCAATCCTTAGGTATCTTAAAAATCAAAAAATGGGATTTTTGAGAGACTCAGCCATWTCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAATTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAAATGAGAATTTCAGAGAAATGAAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30225</snp_id>
        <super_contig>c005201060.Contig1</super_contig>
        <contig_pos>14211</contig_pos>
        <strand>+</strand>
        <context>AGCCATWTCT[C/T]TGCTCGAATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTATCTTAAAAATCAAAAAATGGGATTTTTGAGAGACTCAGCCATTTCT</left_flank>
        <right_flank>TGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAATTTTAATTCGGCTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGAAAAATCTGATAATACATTCTAACTTCTCAATACAAAAAAACTTCGAATTCAGAAAAATTGTCGAAATTCCAAATTTTTTGCAATAAGCGAGAACTTTAATTATTCTAATTTCCCAGTTCTCGAGCTTCAATTCAATGCAGAAATCAACTTTCTAGCTGTTCTAGGAGCCGAGATACAGACGATTGAAATTTCCACTGTCTGCGTCTCGCCGACGGTTAGAGAAGCAGTGTGTCTCGCCGTCTGCGTCTCTCCCGAAACTTCAAATTGCTGTATCTCGGCTTGTAGAAGGGCTGGGAACGTGGTTCTTTTTGTATTTTGTATATTGTTGAACTTCCTATCTTCTCCAAGATATTCGAGTTCAGAATTCGGATCTCTTGATAGCTTACAAGAAGAGACATGGAAGTTTAGACGCTCTAGCTGTCTAATTTAGAATCTCAATCCTTAGGTATCTTAAAAATCAAAAAATGGGATTTTTGAGAGACTCAGCCATTTCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAATTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAAATGAGAATTTCAGAGAAATGAAGAAAACATAATTAAAAAATCCGAATTTCATAATAACTCCAAAATTCTAATTTTTCAGGCAAACTTCACGGACCAACTGGAAATCTGGGTGTTTGGTGGAGTCAGGATTCTCAGAGAAAATTCAAAACTCGTGAGCAATGTTTCATCAAACAGTACGCCGGATTGATGGATTCGCATGATGTAACTTTTTTTTTAATTCAGAATTTTCTAAAAACTGTGTTTTTTCAGATGAACGCCGCCAAAGAAGGCCTCTACGAGAATATTGCCGATCATGTGGGACTGAAAGTGGCTTATGAGGTAGATTTTTTGTTTGAAAATTTTAAGAAATGTCAAAACATAGAAGAGAGAAATTGATTTCAGCCAACAACCACAT</canonical>
            <polymorphic>ACTGAAAAATCTGATAATACATTCTAACTTCTCAATACAAAAAAACTTCGAATTCAGAAAAATTGTCGAAATTCCAAATTTTTTGCAATAAGCGAGAACTTTAATTATTCTAATTTCCCAGTTCTCGAGCTTCAATTCAATGCAGAAATCAACTTTCTAGCTGTTCTAGGAGCCGAGATACAGACGATTGAAATTTCCACTGTCTGCGTCTCGCCGACGGTTAGAGAAGCAGTGTGTCTCGCCGTCTGCGTCTCTCCCGAAACTTCAAATTGCTGTATCTCGGCTTGTAGAAGGGCTGGGAACGTGGTTCTTTTTGTATTTTGTATATTGTTGAACTTCCTATCTTCTCCAAGATATTCGAGTTCAGAATTCGGATCTCTTGATAGCTTACAAGAAGAGACATGGAAGTTTAGACGCTCTAGCTGTCTAATTTAGAATCTCAATCCTTAGGTATCTTAAAAATCAAAAAATGGGATTTTTGAGAGACTCAGCCATTTCTYTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAATTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAAATGAGAATTTCAGAGAAATGAAGAAAACATAATTAAAAAATCCGAATTTCATAATAACTCCAAAATTCTAATTTTTCAGGCAAACTTCACGGACCAACTGGAAATCTGGGTGTTTGGTGGAGTCAGGATTCTCAGAGAAAATTCAAAACTCGTGAGCAATGTTTCATCAAACAGTACGCCGGATTGATGGATTCGCATGATGTAACTTTTTTTTTAATTCAGAATTTTCTAAAAACTGTGTTTTTTCAGATGAACGCCGCCAAAGAAGGCCTCTACGAGAATATTGCCGATCATGTGGGACTGAAAGTGGCTTATGAGGTAGATTTTTTGTTTGAAAATTTTAAGAAATGTCAAAACATAGAAGAGAGAAATTGATTTCAGCCAACAACCACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACAAGAAGAGACATGGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTTCATTTCTCTGAAATTCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTACAAGAAGAGACATGGAAGTTTAGACGCTCTAGCTGTCTAATTTAGAATCTCAATCCTTAGGTATCTTAAAAATCAAAAAATGGGATTTTTGAGAGACTCAGCCATTTCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAATTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAAATGAGAATTTCAGAGAAATGAAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTACAAGAAGAGACATGGAAGTTTAGACGCTCTAGCTGTCTAATTTAGAATCTCAATCCTTAGGTATCTTAAAAATCAAAAAATGGGATTTTTGAGAGACTCAGCCATTTCTYTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAATTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAAATGAGAATTTCAGAGAAATGAAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30226</snp_id>
        <super_contig>c005201060.Contig1</super_contig>
        <contig_pos>14246</contig_pos>
        <strand>+</strand>
        <context>AATTTTAAAC[A/C]AYTTTAATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GACTCAGCCATTTCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAAC</left_flank>
        <right_flank>ATTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACAAAAAAACTTCGAATTCAGAAAAATTGTCGAAATTCCAAATTTTTTGCAATAAGCGAGAACTTTAATTATTCTAATTTCCCAGTTCTCGAGCTTCAATTCAATGCAGAAATCAACTTTCTAGCTGTTCTAGGAGCCGAGATACAGACGATTGAAATTTCCACTGTCTGCGTCTCGCCGACGGTTAGAGAAGCAGTGTGTCTCGCCGTCTGCGTCTCTCCCGAAACTTCAAATTGCTGTATCTCGGCTTGTAGAAGGGCTGGGAACGTGGTTCTTTTTGTATTTTGTATATTGTTGAACTTCCTATCTTCTCCAAGATATTCGAGTTCAGAATTCGGATCTCTTGATAGCTTACAAGAAGAGACATGGAAGTTTAGACGCTCTAGCTGTCTAATTTAGAATCTCAATCCTTAGGTATCTTAAAAATCAAAAAATGGGATTTTTGAGAGACTCAGCCATTTCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAATTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAAATGAGAATTTCAGAGAAATGAAGAAAACATAATTAAAAAATCCGAATTTCATAATAACTCCAAAATTCTAATTTTTCAGGCAAACTTCACGGACCAACTGGAAATCTGGGTGTTTGGTGGAGTCAGGATTCTCAGAGAAAATTCAAAACTCGTGAGCAATGTTTCATCAAACAGTACGCCGGATTGATGGATTCGCATGATGTAACTTTTTTTTTAATTCAGAATTTTCTAAAAACTGTGTTTTTTCAGATGAACGCCGCCAAAGAAGGCCTCTACGAGAATATTGCCGATCATGTGGGACTGAAAGTGGCTTATGAGGTAGATTTTTTGTTTGAAAATTTTAAGAAATGTCAAAACATAGAAGAGAGAAATTGATTTCAGCCAACAACCACATTTCTAGCTTTCCTAGAAGCCGAGATACAGCCATTT</canonical>
            <polymorphic>TACAAAAAAACTTCGAATTCAGAAAAATTGTCGAAATTCCAAATTTTTTGCAATAAGCGAGAACTTTAATTATTCTAATTTCCCAGTTCTCGAGCTTCAATTCAATGCAGAAATCAACTTTCTAGCTGTTCTAGGAGCCGAGATACAGACGATTGAAATTTCCACTGTCTGCGTCTCGCCGACGGTTAGAGAAGCAGTGTGTCTCGCCGTCTGCGTCTCTCCCGAAACTTCAAATTGCTGTATCTCGGCTTGTAGAAGGGCTGGGAACGTGGTTCTTTTTGTATTTTGTATATTGTTGAACTTCCTATCTTCTCCAAGATATTCGAGTTCAGAATTCGGATCTCTTGATAGCTTACAAGAAGAGACATGGAAGTTTAGACGCTCTAGCTGTCTAATTTAGAATCTCAATCCTTAGGTATCTTAAAAATCAAAAAATGGGATTTTTGAGAGACTCAGCCATTTCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACMATTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAAATGAGAATTTCAGAGAAATGAAGAAAACATAATTAAAAAATCCGAATTTCATAATAACTCCAAAATTCTAATTTTTCAGGCAAACTTCACGGACCAACTGGAAATCTGGGTGTTTGGTGGAGTCAGGATTCTCAGAGAAAATTCAAAACTCGTGAGCAATGTTTCATCAAACAGTACGCCGGATTGATGGATTCGCATGATGTAACTTTTTTTTTAATTCAGAATTTTCTAAAAACTGTGTTTTTTCAGATGAACGCCGCCAAAGAAGGCCTCTACGAGAATATTGCCGATCATGTGGGACTGAAAGTGGCTTATGAGGTAGATTTTTTGTTTGAAAATTTTAAGAAATGTCAAAACATAGAAGAGAGAAATTGATTTCAGCCAACAACCACATTTCTAGCTTTCCTAGAAGCCGAGATACAGCCATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>114 100 96 76 76 70 61 60 58 49 33 26 25 22 22 19 15 14 10 10 9 9 7 7 6 6</canonical_bands>
                <polymorphic_bands>114 100 96 76 76 70 61 60 58 49 33 26 25 22 22 19 16 15 14 10 9 9 7 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACAAGAAGAGACATGGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTTCATTTCTCTGAAATTCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTACAAGAAGAGACATGGAAGTTTAGACGCTCTAGCTGTCTAATTTAGAATCTCAATCCTTAGGTATCTTAAAAATCAAAAAATGGGATTTTTGAGAGACTCAGCCATTTCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAATTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAAATGAGAATTTCAGAGAAATGAAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTACAAGAAGAGACATGGAAGTTTAGACGCTCTAGCTGTCTAATTTAGAATCTCAATCCTTAGGTATCTTAAAAATCAAAAAATGGGATTTTTGAGAGACTCAGCCATTTCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACMATTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAAATGAGAATTTCAGAGAAATGAAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30227</snp_id>
        <super_contig>c005201060.Contig1</super_contig>
        <contig_pos>14248</contig_pos>
        <strand>+</strand>
        <context>TTTTAAACMA[C/T]TTTAATTCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCAGCCATTTCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAA</left_flank>
        <right_flank>TTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAAAAACTTCGAATTCAGAAAAATTGTCGAAATTCCAAATTTTTTGCAATAAGCGAGAACTTTAATTATTCTAATTTCCCAGTTCTCGAGCTTCAATTCAATGCAGAAATCAACTTTCTAGCTGTTCTAGGAGCCGAGATACAGACGATTGAAATTTCCACTGTCTGCGTCTCGCCGACGGTTAGAGAAGCAGTGTGTCTCGCCGTCTGCGTCTCTCCCGAAACTTCAAATTGCTGTATCTCGGCTTGTAGAAGGGCTGGGAACGTGGTTCTTTTTGTATTTTGTATATTGTTGAACTTCCTATCTTCTCCAAGATATTCGAGTTCAGAATTCGGATCTCTTGATAGCTTACAAGAAGAGACATGGAAGTTTAGACGCTCTAGCTGTCTAATTTAGAATCTCAATCCTTAGGTATCTTAAAAATCAAAAAATGGGATTTTTGAGAGACTCAGCCATTTCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAATTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAAATGAGAATTTCAGAGAAATGAAGAAAACATAATTAAAAAATCCGAATTTCATAATAACTCCAAAATTCTAATTTTTCAGGCAAACTTCACGGACCAACTGGAAATCTGGGTGTTTGGTGGAGTCAGGATTCTCAGAGAAAATTCAAAACTCGTGAGCAATGTTTCATCAAACAGTACGCCGGATTGATGGATTCGCATGATGTAACTTTTTTTTTAATTCAGAATTTTCTAAAAACTGTGTTTTTTCAGATGAACGCCGCCAAAGAAGGCCTCTACGAGAATATTGCCGATCATGTGGGACTGAAAGTGGCTTATGAGGTAGATTTTTTGTTTGAAAATTTTAAGAAATGTCAAAACATAGAAGAGAGAAATTGATTTCAGCCAACAACCACATTTCTAGCTTTCCTAGAAGCCGAGATACAGCCATTTGA</canonical>
            <polymorphic>CAAAAAAACTTCGAATTCAGAAAAATTGTCGAAATTCCAAATTTTTTGCAATAAGCGAGAACTTTAATTATTCTAATTTCCCAGTTCTCGAGCTTCAATTCAATGCAGAAATCAACTTTCTAGCTGTTCTAGGAGCCGAGATACAGACGATTGAAATTTCCACTGTCTGCGTCTCGCCGACGGTTAGAGAAGCAGTGTGTCTCGCCGTCTGCGTCTCTCCCGAAACTTCAAATTGCTGTATCTCGGCTTGTAGAAGGGCTGGGAACGTGGTTCTTTTTGTATTTTGTATATTGTTGAACTTCCTATCTTCTCCAAGATATTCGAGTTCAGAATTCGGATCTCTTGATAGCTTACAAGAAGAGACATGGAAGTTTAGACGCTCTAGCTGTCTAATTTAGAATCTCAATCCTTAGGTATCTTAAAAATCAAAAAATGGGATTTTTGAGAGACTCAGCCATTTCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAAYTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAAATGAGAATTTCAGAGAAATGAAGAAAACATAATTAAAAAATCCGAATTTCATAATAACTCCAAAATTCTAATTTTTCAGGCAAACTTCACGGACCAACTGGAAATCTGGGTGTTTGGTGGAGTCAGGATTCTCAGAGAAAATTCAAAACTCGTGAGCAATGTTTCATCAAACAGTACGCCGGATTGATGGATTCGCATGATGTAACTTTTTTTTTAATTCAGAATTTTCTAAAAACTGTGTTTTTTCAGATGAACGCCGCCAAAGAAGGCCTCTACGAGAATATTGCCGATCATGTGGGACTGAAAGTGGCTTATGAGGTAGATTTTTTGTTTGAAAATTTTAAGAAATGTCAAAACATAGAAGAGAGAAATTGATTTCAGCCAACAACCACATTTCTAGCTTTCCTAGAAGCCGAGATACAGCCATTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>114 100 96 76 76 70 62 61 58 49 33 26 25 22 22 19 14 13 10 10 9 9 7 7 6 6</canonical_bands>
                <polymorphic_bands>114 100 96 76 76 70 62 61 58 49 33 26 25 22 22 19 16 14 13 10 9 9 7 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACAAGAAGAGACATGGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTTCATTTCTCTGAAATTCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTACAAGAAGAGACATGGAAGTTTAGACGCTCTAGCTGTCTAATTTAGAATCTCAATCCTTAGGTATCTTAAAAATCAAAAAATGGGATTTTTGAGAGACTCAGCCATTTCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAATTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAAATGAGAATTTCAGAGAAATGAAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTACAAGAAGAGACATGGAAGTTTAGACGCTCTAGCTGTCTAATTTAGAATCTCAATCCTTAGGTATCTTAAAAATCAAAAAATGGGATTTTTGAGAGACTCAGCCATTTCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAAYTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAAATGAGAATTTCAGAGAAATGAAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30228</snp_id>
        <super_contig>c005201060.Contig1</super_contig>
        <contig_pos>14318</contig_pos>
        <strand>+</strand>
        <context>ATTTTAAAAA[A/G]TGAGAATTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAA</left_flank>
        <right_flank>TGAGAATTTCAGAGAAATGAAGAAAACATAATTAAAAAATCCGAATTTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTAATTTCCCAGTTCTCGAGCTTCAATTCAATGCAGAAATCAACTTTCTAGCTGTTCTAGGAGCCGAGATACAGACGATTGAAATTTCCACTGTCTGCGTCTCGCCGACGGTTAGAGAAGCAGTGTGTCTCGCCGTCTGCGTCTCTCCCGAAACTTCAAATTGCTGTATCTCGGCTTGTAGAAGGGCTGGGAACGTGGTTCTTTTTGTATTTTGTATATTGTTGAACTTCCTATCTTCTCCAAGATATTCGAGTTCAGAATTCGGATCTCTTGATAGCTTACAAGAAGAGACATGGAAGTTTAGACGCTCTAGCTGTCTAATTTAGAATCTCAATCCTTAGGTATCTTAAAAATCAAAAAATGGGATTTTTGAGAGACTCAGCCATTTCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAATTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAAATGAGAATTTCAGAGAAATGAAGAAAACATAATTAAAAAATCCGAATTTCATAATAACTCCAAAATTCTAATTTTTCAGGCAAACTTCACGGACCAACTGGAAATCTGGGTGTTTGGTGGAGTCAGGATTCTCAGAGAAAATTCAAAACTCGTGAGCAATGTTTCATCAAACAGTACGCCGGATTGATGGATTCGCATGATGTAACTTTTTTTTTAATTCAGAATTTTCTAAAAACTGTGTTTTTTCAGATGAACGCCGCCAAAGAAGGCCTCTACGAGAATATTGCCGATCATGTGGGACTGAAAGTGGCTTATGAGGTAGATTTTTTGTTTGAAAATTTTAAGAAATGTCAAAACATAGAAGAGAGAAATTGATTTCAGCCAACAACCACATTTCTAGCTTTCCTAGAAGCCGAGATACAGCCATTTGAAGTTTTGNNNNNNNNNNGCTGTATCTGGGCTTCCAGATGAGCTAGAAACCTGGTTTTTGGACCATAATGA</canonical>
            <polymorphic>TTCTAATTTCCCAGTTCTCGAGCTTCAATTCAATGCAGAAATCAACTTTCTAGCTGTTCTAGGAGCCGAGATACAGACGATTGAAATTTCCACTGTCTGCGTCTCGCCGACGGTTAGAGAAGCAGTGTGTCTCGCCGTCTGCGTCTCTCCCGAAACTTCAAATTGCTGTATCTCGGCTTGTAGAAGGGCTGGGAACGTGGTTCTTTTTGTATTTTGTATATTGTTGAACTTCCTATCTTCTCCAAGATATTCGAGTTCAGAATTCGGATCTCTTGATAGCTTACAAGAAGAGACATGGAAGTTTAGACGCTCTAGCTGTCTAATTTAGAATCTCAATCCTTAGGTATCTTAAAAATCAAAAAATGGGATTTTTGAGAGACTCAGCCATTTCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAATTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAARTGAGAATTTCAGAGAAATGAAGAAAACATAATTAAAAAATCCGAATTTCATAATAACTCCAAAATTCTAATTTTTCAGGCAAACTTCACGGACCAACTGGAAATCTGGGTGTTTGGTGGAGTCAGGATTCTCAGAGAAAATTCAAAACTCGTGAGCAATGTTTCATCAAACAGTACGCCGGATTGATGGATTCGCATGATGTAACTTTTTTTTTAATTCAGAATTTTCTAAAAACTGTGTTTTTTCAGATGAACGCCGCCAAAGAAGGCCTCTACGAGAATATTGCCGATCATGTGGGACTGAAAGTGGCTTATGAGGTAGATTTTTTGTTTGAAAATTTTAAGAAATGTCAAAACATAGAAGAGAGAAATTGATTTCAGCCAACAACCACATTTCTAGCTTTCCTAGAAGCCGAGATACAGCCATTTGAAGTTTTGNNNNNNNNNNGCTGTATCTGGGCTTCCAGATGAGCTAGAAACCTGGTTTTTGGACCATAATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTTAGGTATCTTAAAAATCAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTGCCTGAAAAATTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCTTAGGTATCTTAAAAATCAAAAAATGGGATTTTTGAGAGACTCAGCCATTTCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAATTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAAATGAGAATTTCAGAGAAATGAAGAAAACATAATTAAAAAATCCGAATTTCATAATAACTCCAAAATTCTAATTTTTCAGGCAAACTT</canonical_amplicon>
		<polymorphic_amplicon>TCCTTAGGTATCTTAAAAATCAAAAAATGGGATTTTTGAGAGACTCAGCCATTTCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAATTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAARTGAGAATTTCAGAGAAATGAAGAAAACATAATTAAAAAATCCGAATTTCATAATAACTCCAAAATTCTAATTTTTCAGGCAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30229</snp_id>
        <super_contig>c005201060.Contig1</super_contig>
        <contig_pos>14348</contig_pos>
        <strand>+</strand>
        <context>AAGAAAACAT[A/T]ATWAAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCGAATTTTTATTTTAAAAAATGAGAATTTCAGAGAAATGAAGAAAACAT</left_flank>
        <right_flank>ATTAAAAAATCCGAATTTCATAATAACTCCAAAATTCTAATTTTTCAGGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATGCAGAAATCAACTTTCTAGCTGTTCTAGGAGCCGAGATACAGACGATTGAAATTTCCACTGTCTGCGTCTCGCCGACGGTTAGAGAAGCAGTGTGTCTCGCCGTCTGCGTCTCTCCCGAAACTTCAAATTGCTGTATCTCGGCTTGTAGAAGGGCTGGGAACGTGGTTCTTTTTGTATTTTGTATATTGTTGAACTTCCTATCTTCTCCAAGATATTCGAGTTCAGAATTCGGATCTCTTGATAGCTTACAAGAAGAGACATGGAAGTTTAGACGCTCTAGCTGTCTAATTTAGAATCTCAATCCTTAGGTATCTTAAAAATCAAAAAATGGGATTTTTGAGAGACTCAGCCATTTCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAATTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAAATGAGAATTTCAGAGAAATGAAGAAAACATAATTAAAAAATCCGAATTTCATAATAACTCCAAAATTCTAATTTTTCAGGCAAACTTCACGGACCAACTGGAAATCTGGGTGTTTGGTGGAGTCAGGATTCTCAGAGAAAATTCAAAACTCGTGAGCAATGTTTCATCAAACAGTACGCCGGATTGATGGATTCGCATGATGTAACTTTTTTTTTAATTCAGAATTTTCTAAAAACTGTGTTTTTTCAGATGAACGCCGCCAAAGAAGGCCTCTACGAGAATATTGCCGATCATGTGGGACTGAAAGTGGCTTATGAGGTAGATTTTTTGTTTGAAAATTTTAAGAAATGTCAAAACATAGAAGAGAGAAATTGATTTCAGCCAACAACCACATTTCTAGCTTTCCTAGAAGCCGAGATACAGCCATTTGAAGTTTTGNNNNNNNNNNGCTGTATCTGGGCTTCCAGATGAGCTAGAAACCTGGTTTTTGGACCATAATGAGAGACGCAGACCACAAGATACCCTAACCGT</canonical>
            <polymorphic>CAATGCAGAAATCAACTTTCTAGCTGTTCTAGGAGCCGAGATACAGACGATTGAAATTTCCACTGTCTGCGTCTCGCCGACGGTTAGAGAAGCAGTGTGTCTCGCCGTCTGCGTCTCTCCCGAAACTTCAAATTGCTGTATCTCGGCTTGTAGAAGGGCTGGGAACGTGGTTCTTTTTGTATTTTGTATATTGTTGAACTTCCTATCTTCTCCAAGATATTCGAGTTCAGAATTCGGATCTCTTGATAGCTTACAAGAAGAGACATGGAAGTTTAGACGCTCTAGCTGTCTAATTTAGAATCTCAATCCTTAGGTATCTTAAAAATCAAAAAATGGGATTTTTGAGAGACTCAGCCATTTCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAATTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAAATGAGAATTTCAGAGAAATGAAGAAAACATWATTAAAAAATCCGAATTTCATAATAACTCCAAAATTCTAATTTTTCAGGCAAACTTCACGGACCAACTGGAAATCTGGGTGTTTGGTGGAGTCAGGATTCTCAGAGAAAATTCAAAACTCGTGAGCAATGTTTCATCAAACAGTACGCCGGATTGATGGATTCGCATGATGTAACTTTTTTTTTAATTCAGAATTTTCTAAAAACTGTGTTTTTTCAGATGAACGCCGCCAAAGAAGGCCTCTACGAGAATATTGCCGATCATGTGGGACTGAAAGTGGCTTATGAGGTAGATTTTTTGTTTGAAAATTTTAAGAAATGTCAAAACATAGAAGAGAGAAATTGATTTCAGCCAACAACCACATTTCTAGCTTTCCTAGAAGCCGAGATACAGCCATTTGAAGTTTTGNNNNNNNNNNGCTGTATCTGGGCTTCCAGATGAGCTAGAAACCTGGTTTTTGGACCATAATGAGAGACGCAGACCACAAGATACCCTAACCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>162 114 100 96 76 76 70 61 54 49 33 25 22 19 14 10 7 6 6</canonical_bands>
                <polymorphic_bands>162 114 100 96 76 76 70 61 54 49 39 33 22 19 10 7 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTTAGGTATCTTAAAAATCAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTGCCTGAAAAATTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCTTAGGTATCTTAAAAATCAAAAAATGGGATTTTTGAGAGACTCAGCCATTTCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAATTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAAATGAGAATTTCAGAGAAATGAAGAAAACATAATTAAAAAATCCGAATTTCATAATAACTCCAAAATTCTAATTTTTCAGGCAAACTT</canonical_amplicon>
		<polymorphic_amplicon>TCCTTAGGTATCTTAAAAATCAAAAAATGGGATTTTTGAGAGACTCAGCCATTTCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAATTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAAATGAGAATTTCAGAGAAATGAAGAAAACATWATTAAAAAATCCGAATTTCATAATAACTCCAAAATTCTAATTTTTCAGGCAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30230</snp_id>
        <super_contig>c005201060.Contig1</super_contig>
        <contig_pos>14351</contig_pos>
        <strand>+</strand>
        <context>AAAACATWAT[A/T]AAAAAATCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTTTATTTTAAAAAATGAGAATTTCAGAGAAATGAAGAAAACATAAT</left_flank>
        <right_flank>AAAAAATCCGAATTTCATAATAACTCCAAAATTCTAATTTTTCAGGCAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCAGAAATCAACTTTCTAGCTGTTCTAGGAGCCGAGATACAGACGATTGAAATTTCCACTGTCTGCGTCTCGCCGACGGTTAGAGAAGCAGTGTGTCTCGCCGTCTGCGTCTCTCCCGAAACTTCAAATTGCTGTATCTCGGCTTGTAGAAGGGCTGGGAACGTGGTTCTTTTTGTATTTTGTATATTGTTGAACTTCCTATCTTCTCCAAGATATTCGAGTTCAGAATTCGGATCTCTTGATAGCTTACAAGAAGAGACATGGAAGTTTAGACGCTCTAGCTGTCTAATTTAGAATCTCAATCCTTAGGTATCTTAAAAATCAAAAAATGGGATTTTTGAGAGACTCAGCCATTTCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAATTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAAATGAGAATTTCAGAGAAATGAAGAAAACATAATTAAAAAATCCGAATTTCATAATAACTCCAAAATTCTAATTTTTCAGGCAAACTTCACGGACCAACTGGAAATCTGGGTGTTTGGTGGAGTCAGGATTCTCAGAGAAAATTCAAAACTCGTGAGCAATGTTTCATCAAACAGTACGCCGGATTGATGGATTCGCATGATGTAACTTTTTTTTTAATTCAGAATTTTCTAAAAACTGTGTTTTTTCAGATGAACGCCGCCAAAGAAGGCCTCTACGAGAATATTGCCGATCATGTGGGACTGAAAGTGGCTTATGAGGTAGATTTTTTGTTTGAAAATTTTAAGAAATGTCAAAACATAGAAGAGAGAAATTGATTTCAGCCAACAACCACATTTCTAGCTTTCCTAGAAGCCGAGATACAGCCATTTGAAGTTTTGNNNNNNNNNNGCTGTATCTGGGCTTCCAGATGAGCTAGAAACCTGGTTTTTGGACCATAATGAGAGACGCAGACCACAAGATACCCTAACCGTTAT</canonical>
            <polymorphic>TGCAGAAATCAACTTTCTAGCTGTTCTAGGAGCCGAGATACAGACGATTGAAATTTCCACTGTCTGCGTCTCGCCGACGGTTAGAGAAGCAGTGTGTCTCGCCGTCTGCGTCTCTCCCGAAACTTCAAATTGCTGTATCTCGGCTTGTAGAAGGGCTGGGAACGTGGTTCTTTTTGTATTTTGTATATTGTTGAACTTCCTATCTTCTCCAAGATATTCGAGTTCAGAATTCGGATCTCTTGATAGCTTACAAGAAGAGACATGGAAGTTTAGACGCTCTAGCTGTCTAATTTAGAATCTCAATCCTTAGGTATCTTAAAAATCAAAAAATGGGATTTTTGAGAGACTCAGCCATTTCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAATTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAAATGAGAATTTCAGAGAAATGAAGAAAACATAATWAAAAAATCCGAATTTCATAATAACTCCAAAATTCTAATTTTTCAGGCAAACTTCACGGACCAACTGGAAATCTGGGTGTTTGGTGGAGTCAGGATTCTCAGAGAAAATTCAAAACTCGTGAGCAATGTTTCATCAAACAGTACGCCGGATTGATGGATTCGCATGATGTAACTTTTTTTTTAATTCAGAATTTTCTAAAAACTGTGTTTTTTCAGATGAACGCCGCCAAAGAAGGCCTCTACGAGAATATTGCCGATCATGTGGGACTGAAAGTGGCTTATGAGGTAGATTTTTTGTTTGAAAATTTTAAGAAATGTCAAAACATAGAAGAGAGAAATTGATTTCAGCCAACAACCACATTTCTAGCTTTCCTAGAAGCCGAGATACAGCCATTTGAAGTTTTGNNNNNNNNNNGCTGTATCTGGGCTTCCAGATGAGCTAGAAACCTGGTTTTTGGACCATAATGAGAGACGCAGACCACAAGATACCCTAACCGTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>316 193 181 127 73 61 39 10</canonical_bands>
                <polymorphic_bands>316 220 193 127 73 61 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>165 114 100 96 76 76 70 61 51 49 33 25 22 19 14 10 7 6 6</canonical_bands>
                <polymorphic_bands>165 114 100 96 76 76 70 61 51 49 39 33 22 19 10 7 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTTAGGTATCTTAAAAATCAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTGCCTGAAAAATTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCTTAGGTATCTTAAAAATCAAAAAATGGGATTTTTGAGAGACTCAGCCATTTCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAATTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAAATGAGAATTTCAGAGAAATGAAGAAAACATAATTAAAAAATCCGAATTTCATAATAACTCCAAAATTCTAATTTTTCAGGCAAACTT</canonical_amplicon>
		<polymorphic_amplicon>TCCTTAGGTATCTTAAAAATCAAAAAATGGGATTTTTGAGAGACTCAGCCATTTCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAATTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAAATGAGAATTTCAGAGAAATGAAGAAAACATAATWAAAAAATCCGAATTTCATAATAACTCCAAAATTCTAATTTTTCAGGCAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30231</snp_id>
        <super_contig>c005201060.Contig1</super_contig>
        <contig_pos>14527</contig_pos>
        <strand>+</strand>
        <context>ATGTAACTTT[A/T]TTTTTAATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTTTCATCAAACAGTACGCCGGATTGATGGATTCGCATGATGTAACTTT</left_flank>
        <right_flank>TTTTTAATTCAGAATTTTCTAAAAACTGTGTTTTTTCAGATGAACGCCGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTTGTATATTGTTGAACTTCCTATCTTCTCCAAGATATTCGAGTTCAGAATTCGGATCTCTTGATAGCTTACAAGAAGAGACATGGAAGTTTAGACGCTCTAGCTGTCTAATTTAGAATCTCAATCCTTAGGTATCTTAAAAATCAAAAAATGGGATTTTTGAGAGACTCAGCCATTTCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAATTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAAATGAGAATTTCAGAGAAATGAAGAAAACATAATTAAAAAATCCGAATTTCATAATAACTCCAAAATTCTAATTTTTCAGGCAAACTTCACGGACCAACTGGAAATCTGGGTGTTTGGTGGAGTCAGGATTCTCAGAGAAAATTCAAAACTCGTGAGCAATGTTTCATCAAACAGTACGCCGGATTGATGGATTCGCATGATGTAACTTTTTTTTTAATTCAGAATTTTCTAAAAACTGTGTTTTTTCAGATGAACGCCGCCAAAGAAGGCCTCTACGAGAATATTGCCGATCATGTGGGACTGAAAGTGGCTTATGAGGTAGATTTTTTGTTTGAAAATTTTAAGAAATGTCAAAACATAGAAGAGAGAAATTGATTTCAGCCAACAACCACATTTCTAGCTTTCCTAGAAGCCGAGATACAGCCATTTGAAGTTTTGNNNNNNNNNNGCTGTATCTGGGCTTCCAGATGAGCTAGAAACCTGGTTTTTGGACCATAATGAGAGACGCAGACCACAAGATACCCTAACCGTTATCCTATTTTCAGGCTTGGAAACATTCTGGAACTCTGAATTCCGCCCGTATGCCTGGCCTAGAAAAGTACTCGCAAGACCAATTATTCTTCTTAGCGTACACCCAAGGATGGTGTGCTTTAAGATCAAAAACCTACAAACTACAACCACATATGGAGGAGAGAATACGGTAATTTTGG</canonical>
            <polymorphic>TATTTTGTATATTGTTGAACTTCCTATCTTCTCCAAGATATTCGAGTTCAGAATTCGGATCTCTTGATAGCTTACAAGAAGAGACATGGAAGTTTAGACGCTCTAGCTGTCTAATTTAGAATCTCAATCCTTAGGTATCTTAAAAATCAAAAAATGGGATTTTTGAGAGACTCAGCCATTTCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAATTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAAATGAGAATTTCAGAGAAATGAAGAAAACATAATTAAAAAATCCGAATTTCATAATAACTCCAAAATTCTAATTTTTCAGGCAAACTTCACGGACCAACTGGAAATCTGGGTGTTTGGTGGAGTCAGGATTCTCAGAGAAAATTCAAAACTCGTGAGCAATGTTTCATCAAACAGTACGCCGGATTGATGGATTCGCATGATGTAACTTTWTTTTTAATTCAGAATTTTCTAAAAACTGTGTTTTTTCAGATGAACGCCGCCAAAGAAGGCCTCTACGAGAATATTGCCGATCATGTGGGACTGAAAGTGGCTTATGAGGTAGATTTTTTGTTTGAAAATTTTAAGAAATGTCAAAACATAGAAGAGAGAAATTGATTTCAGCCAACAACCACATTTCTAGCTTTCCTAGAAGCCGAGATACAGCCATTTGAAGTTTTGNNNNNNNNNNGCTGTATCTGGGCTTCCAGATGAGCTAGAAACCTGGTTTTTGGACCATAATGAGAGACGCAGACCACAAGATACCCTAACCGTTATCCTATTTTCAGGCTTGGAAACATTCTGGAACTCTGAATTCCGCCCGTATGCCTGGCCTAGAAAAGTACTCGCAAGACCAATTATTCTTCTTAGCGTACACCCAAGGATGGTGTGCTTTAAGATCAAAAACCTACAAACTACAACCACATATGGAGGAGAGAATACGGTAATTTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATTTCATAATAACTCCAAAA</pcr_primer_p1>
		<pcr_primer_p2>GATCGGCAATATTCTCGTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGAATTTCATAATAACTCCAAAATTCTAATTTTTCAGGCAAACTTCACGGACCAACTGGAAATCTGGGTGTTTGGTGGAGTCAGGATTCTCAGAGAAAATTCAAAACTCGTGAGCAATGTTTCATCAAACAGTACGCCGGATTGATGGATTCGCATGATGTAACTTTTTTTTTAATTCAGAATTTTCTAAAAACTGTGTTTTTTCAGATGAACGCCGCCAAAGAAGGCCTCTACGAGAATATTGCCGATC</canonical_amplicon>
		<polymorphic_amplicon>CGAATTTCATAATAACTCCAAAATTCTAATTTTTCAGGCAAACTTCACGGACCAACTGGAAATCTGGGTGTTTGGTGGAGTCAGGATTCTCAGAGAAAATTCAAAACTCGTGAGCAATGTTTCATCAAACAGTACGCCGGATTGATGGATTCGCATGATGTAACTTTWTTTTTAATTCAGAATTTTCTAAAAACTGTGTTTTTTCAGATGAACGCCGCCAAAGAAGGCCTCTACGAGAATATTGCCGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30232</snp_id>
        <super_contig>c005201060.Contig1</super_contig>
        <contig_pos>14678</contig_pos>
        <strand>+</strand>
        <context>TCAAAACATA[A/G]AAGAGAGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTATGAGGTAGATTTTTTGTTTGAAAATTTTAAGAAATGTCAAAACATA</left_flank>
        <right_flank>AAGAGAGAAATTGATTTCAGCCAACAACCACATTTCTAGCTTTCCTAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGGGATTTTTGAGAGACTCAGCCATTTCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAATTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAAATGAGAATTTCAGAGAAATGAAGAAAACATAATTAAAAAATCCGAATTTCATAATAACTCCAAAATTCTAATTTTTCAGGCAAACTTCACGGACCAACTGGAAATCTGGGTGTTTGGTGGAGTCAGGATTCTCAGAGAAAATTCAAAACTCGTGAGCAATGTTTCATCAAACAGTACGCCGGATTGATGGATTCGCATGATGTAACTTTTTTTTTAATTCAGAATTTTCTAAAAACTGTGTTTTTTCAGATGAACGCCGCCAAAGAAGGCCTCTACGAGAATATTGCCGATCATGTGGGACTGAAAGTGGCTTATGAGGTAGATTTTTTGTTTGAAAATTTTAAGAAATGTCAAAACATAGAAGAGAGAAATTGATTTCAGCCAACAACCACATTTCTAGCTTTCCTAGAAGCCGAGATACAGCCATTTGAAGTTTTGNNNNNNNNNNGCTGTATCTGGGCTTCCAGATGAGCTAGAAACCTGGTTTTTGGACCATAATGAGAGACGCAGACCACAAGATACCCTAACCGTTATCCTATTTTCAGGCTTGGAAACATTCTGGAACTCTGAATTCCGCCCGTATGCCTGGCCTAGAAAAGTACTCGCAAGACCAATTATTCTTCTTAGCGTACACCCAAGGATGGTGTGCTTTAAGATCAAAAACCTACAAACTACAACCACATATGGAGGAGAGAATACGGTAATTTTGGAAATTCTACTAAAAATGATGAAAGAATCGCGGTTTTACCGTCTCTAGGAGCTGAGATACAGCGAATTAAAGTTTAGGAGGCTAGAGACGCAGACGGCGAGACACTCTAGCCTTCTTGAAGAGACGCAGACATTGGAAACTTCAAACGGCTG</canonical>
            <polymorphic>AAATGGGATTTTTGAGAGACTCAGCCATTTCTCTGCTCGAATCCCTCCCTCTCGCCAAATTTTAAACAATTTTAATTCGGCTTTTAGAAATGCTAGAAGCTTGGCTCTTTGTGAGTTTTGCGAATTTTTATTTTAAAAAATGAGAATTTCAGAGAAATGAAGAAAACATAATTAAAAAATCCGAATTTCATAATAACTCCAAAATTCTAATTTTTCAGGCAAACTTCACGGACCAACTGGAAATCTGGGTGTTTGGTGGAGTCAGGATTCTCAGAGAAAATTCAAAACTCGTGAGCAATGTTTCATCAAACAGTACGCCGGATTGATGGATTCGCATGATGTAACTTTTTTTTTAATTCAGAATTTTCTAAAAACTGTGTTTTTTCAGATGAACGCCGCCAAAGAAGGCCTCTACGAGAATATTGCCGATCATGTGGGACTGAAAGTGGCTTATGAGGTAGATTTTTTGTTTGAAAATTTTAAGAAATGTCAAAACATARAAGAGAGAAATTGATTTCAGCCAACAACCACATTTCTAGCTTTCCTAGAAGCCGAGATACAGCCATTTGAAGTTTTGNNNNNNNNNNGCTGTATCTGGGCTTCCAGATGAGCTAGAAACCTGGTTTTTGGACCATAATGAGAGACGCAGACCACAAGATACCCTAACCGTTATCCTATTTTCAGGCTTGGAAACATTCTGGAACTCTGAATTCCGCCCGTATGCCTGGCCTAGAAAAGTACTCGCAAGACCAATTATTCTTCTTAGCGTACACCCAAGGATGGTGTGCTTTAAGATCAAAAACCTACAAACTACAACCACATATGGAGGAGAGAATACGGTAATTTTGGAAATTCTACTAAAAATGATGAAAGAATCGCGGTTTTACCGTCTCTAGGAGCTGAGATACAGCGAATTAAAGTTTAGGAGGCTAGAGACGCAGACGGCGAGACACTCTAGCCTTCTTGAAGAGACGCAGACATTGGAAACTTCAAACGGCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGTGGCTTATGAGGTAGATTT</pcr_primer_p1>
		<pcr_primer_p2>CTGAAAATAGGATAACGGTTAGG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AAAGTGGCTTATGAGGTAGATTTTTTGTTTGAAAATTTTAAGAAATGTCAAAACATAGAAGAGAGAAATTGATTTCAGCCAACAACCACATTTCTAGCTTTCCTAGAAGCCGAGATACAGCCATTTGAAGTTTTGNNNNNNNNNNGCTGTATCTGGGCTTCCAGATGAGCTAGAAACCTGGTTTTTGGACCATAATGAGAGACGCAGACCACAAGATACCCTAACCGTTATCCTATTTTCAG</canonical_amplicon>
		<polymorphic_amplicon>AAAGTGGCTTATGAGGTAGATTTTTTGTTTGAAAATTTTAAGAAATGTCAAAACATARAAGAGAGAAATTGATTTCAGCCAACAACCACATTTCTAGCTTTCCTAGAAGCCGAGATACAGCCATTTGAAGTTTTGNNNNNNNNNNGCTGTATCTGGGCTTCCAGATGAGCTAGAAACCTGGTTTTTGGACCATAATGAGAGACGCAGACCACAAGATACCCTAACCGTTATCCTATTTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30233</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>29790</contig_pos>
        <strand></strand>
        <context>ttatgatcta[C/A]aatttatcag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AGATGTCGAAAAGTAGTCAACTGATAAAACGTTGGTGACATTATGATCTA</left_flank>
        <right_flank>AATTTATCAGTTGATAAATTTTTCATATCTTGAACAGAAACGGAGATGCA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAAAGGAATAATCGGTGAGATGTTCATCTGAAAAGGAAGAAAACACAGTCTGTCAGTTATGTTGCCATCTTCATTTCGTTTTCGTTCGATAGGGACTGTGTAAAATTAGGAGACAAATACTTTCCAACAAATTGTTGTTTGTTTTTTGACCTGTCGTCAGCTGGCCTTTCTGTGTGATTGGAATTCGGTAAAATTTGAACCTCGGCGAAATGCGGTATACAGAACTGTGTAAAAGAGGTTTATTTGTCATAATCCGTACAATACATATTCGAGCAGAACATTTATTTTCAAGCACAATAAAACACACCCATCACCAAAACGAACAGCATTGCAAAGCATCCCATTCTGAAAACCAACTATTAGAGTTTTAATTAAATACCGTAAAACAAGTATTAGAAGGGCGCCCGCACTGTCAAGTCTGAGGTCAATTAATTTAATTCCTATGCAAGATGTCGAAAAGTAGTCAACTGATAAAACGTTGGTGACATTATGATCTACAATTTATCAGTTGATAAATTTTTCATATCTTGAACAGAAACGGAGATGCATTGGCTTAAAGTTGAAAGTTGGGGGCCCTTATATTACAGGTTTTACGGGAAATTAATCCCATACGTAATAAGAAACCCAGTAATGTTATTGCAACATTTGGTCCCACAGCATTCATCCCATTTACTGCATTCAAAAACAAGTGCGGTGGGGTTGGTTCCATTAGAAAATCTCGTATTGAAAAGCTCCACATCCAGTTCTGTCAGACCATATTTACAAACTTTTTCAGCTTCTTCACTCTTTCGGAATAAGCCATTCCAATGATAGGAAGTGTTGTCAAATCTAAATCAGATGTATATTATTTTTCAAGCTTCCGTCCTATAGATGCATACGTAATAGGAACTGATGGTTTTTTAATAATGTAGATCTGTGCTTCTGAGTCAAAATATGTAGAAGTAACATTGGGATCACTGAATAGATACCCCCGTAATTGAGATGAGTCGTACCGAATT</canonical>
            <polymorphic>AGAAAAGGAATAATCGGTGAGATGTTCATCTGAAAAGGAAGAAAACACAGTCTGTCAGTTATGTTGCCATCTTCATTTCGTTTTCGTTCGATAGGGACTGTGTAAAATTAGGAGACAAATACTTTCCAACAAATTGTTGTTTGTTTTTTGACCTGTCGTCAGCTGGCCTTTCTGTGTGATTGGAATTCGGTAAAATTTGAACCTCGGCGAAATGCGGTATACAGAACTGTGTAAAAGAGGTTTATTTGTCATAATCCGTACAATACATATTCGAGCAGAACATTTATTTTCAAGCACAATAAAACACACCCATCACCAAAACGAACAGCATTGCAAAGCATCCCATTCTGAAAACCAACTATTAGAGTTTTAATTAAATACCGTAAAACAAGTATTAGAAGGGCGCCCGCACTGTCAAGTCTGAGGTCAATTAATTTAATTCCTATGCAAGATGTCGAAAAGTAGTCAACTGATAAAACGTTGGTGACATTATGATCTAMAATTTATCAGTTGATAAATTTTTCATATCTTGAACAGAAACGGAGATGCATTGGCTTAAAGTTGAAAGTTGGGGGCCCTTATATTACAGGTTTTACGGGAAATTAATCCCATACGTAATAAGAAACCCAGTAATGTTATTGCAACATTTGGTCCCACAGCATTCATCCCATTTACTGCATTCAAAAACAAGTGCGGTGGGGTTGGTTCCATTAGAAAATCTCGTATTGAAAAGCTCCACATCCAGTTCTGTCAGACCATATTTACAAACTTTTTCAGCTTCTTCACTCTTTCGGAATAAGCCATTCCAATGATAGGAAGTGTTGTCAAATCTAAATCAGATGTATATTATTTTTCAAGCTTCCGTCCTATAGATGCATACGTAATAGGAACTGATGGTTTTTTAATAATGTAGATCTGTGCTTCTGAGTCAAAATATGTAGAAGTAACATTGGGATCACTGAATAGATACCCCCGTAATTGAGATGAGTCGTACCGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCTGAAAACCAACTATTAGAG</pcr_primer_p1>
		<pcr_primer_p2>TTCTTATTACGTATGGGATTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>281</pcr_amplicon_size>
		<canonical_amplicon>CATTCTGAAAACCAACTATTAGAGTTTTAATTAAATACCGTAAAACAAGTATTAGAAGGGCGCCCGCACTGTCAAGTCTGAGGTCAATTAATTTAATTCCTATGCAAGATGTCGAAAAGTAGTCAACTGATAAAACGTTGGTGACATTATGATCTACAATTTATCAGTTGATAAATTTTTCATATCTTGAACAGAAACGGAGATGCATTGGCTTAAAGTTGAAAGTTGGGGGCCCTTATATTACAGGTTTTACGGGAAATTAATCCCATACGTAATAAGAA</canonical_amplicon>
		<polymorphic_amplicon>CATTCTGAAAACCAACTATTAGAGTTTTAATTAAATACCGTAAAACAAGTATTAGAAGGGCGCCCGCACTGTCAAGTCTGAGGTCAATTAATTTAATTCCTATGCAAGATGTCGAAAAGTAGTCAACTGATAAAACGTTGGTGACATTATGATCTAMAATTTATCAGTTGATAAATTTTTCATATCTTGAACAGAAACGGAGATGCATTGGCTTAAAGTTGAAAGTTGGGGGCCCTTATATTACAGGTTTTACGGGAAATTAATCCCATACGTAATAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30234</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>56517</contig_pos>
        <strand>+</strand>
        <context>ACTTTCCCTT[C/T]TTCAAAATGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGTGTGCCAATTTCTTTCGAACTTTGTGTAGTTCTTGGCACTTTCCCTT</left_flank>
        <right_flank>TTCAAAATGTGCCAGACAGTGAACGTCAAGTCTCTCCCCGGTAATTGCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACTATCATTTTTAACTGAACTACTCAACTATCGGGGAAAGGTTAATAAATCATTTGATTTATGACAGTCATAAGAAATTTCAGAGTTCTTTTCCAGAACTTGTGTTTTGCTCAAAACTTTTCAAATTGAAAAAAGCTACATTTCAGATTCAGCTGCTCTTTTGAGCCATTGGATCATAGCTCTCATTTCCTCTTTATTTCCTTCTATTCACCGTTTTAGAATCCATCCTAGGATTGCTATTTCTAGAATTGAACTCAGTTTGAATAGATCGAAATTCTGTTTCAGAATCTACCACACTAAAGAACCTCTTCCTTTAAAGGGGAAATTTCGGAAAATATTTTTTTAATAAAAGAGGAAACCAATGTTGGGATCTCCTTCCTTTTTCCCTACTTCCTTCTTCTCACCTATCATTTGCCGATCAGATTTCAACTTTTTCTCATTCTTTATTTGTGTGCCAATTTCTTTCGAACTTTGTGTAGTTCTTGGCACTTTCCCTTCTTCAAAATGTGCCAGACAGTGAACGTCAAGTCTCTCCCCGGTAATTGCCATTCTCTTTTAATTACCATTTTCCTTTCTGTTTTTAAATAAAACGTCTCGATGTGTCGTCTGATGTGTTTTCGAGTTATCCCTCTTCTAACAGCAGAAGAGAAAAATAGTTGAAAAGTTCCTGGGCACAATGGAATCACAAATGTTCCAAAATATTTACTCGCCGACGCTTTTTTCTCGCTTTCATCCATATGTTTCCTTGTCTGCTATTTTTTATTATATTCTTTTTGAATTCCTCATCTCTTGATATTTCCCACAAGTGCAACTGACACATTCTCGAAGCTTTCAGAATCCAGTTGAATTAATTAGAATTCCATTTTCAGACTTGGCTCCAAGTTTAGAATGCAATTGACAGGATGGCCGGAATACGTCTCTATGATATATTTACCCATAATATTGGTAGGATTGATAGGAAATGGGCTTTCTTTATATGTCTACACTACTCCAAACAT</canonical>
            <polymorphic>TCACTATCATTTTTAACTGAACTACTCAACTATCGGGGAAAGGTTAATAAATCATTTGATTTATGACAGTCATAAGAAATTTCAGAGTTCTTTTCCAGAACTTGTGTTTTGCTCAAAACTTTTCAAATTGAAAAAAGCTACATTTCAGATTCAGCTGCTCTTTTGAGCCATTGGATCATAGCTCTCATTTCCTCTTTATTTCCTTCTATTCACCGTTTTAGAATCCATCCTAGGATTGCTATTTCTAGAATTGAACTCAGTTTGAATAGATCGAAATTCTGTTTCAGAATCTACCACACTAAAGAACCTCTTCCTTTAAAGGGGAAATTTCGGAAAATATTTTTTTAATAAAAGAGGAAACCAATGTTGGGATCTCCTTCCTTTTTCCCTACTTCCTTCTTCTCACCTATCATTTGCCGATCAGATTTCAACTTTTTCTCATTCTTTATTTGTGTGCCAATTTCTTTCGAACTTTGTGTAGTTCTTGGCACTTTCCCTTYTTCAAAATGTGCCAGACAGTGAACGTCAAGTCTCTCCCCGGTAATTGCCATTCTCTTTTAATTACCATTTTCCTTTCTGTTTTTAAATAAAACGTCTCGATGTGTCGTCTGATGTGTTTTCGAGTTATCCCTCTTCTAACAGCAGAAGAGAAAAATAGTTGAAAAGTTCCTGGGCACAATGGAATCACAAATGTTCCAAAATATTTACTCGCCGACGCTTTTTTCTCGCTTTCATCCATATGTTTCCTTGTCTGCTATTTTTTATTATATTCTTTTTGAATTCCTCATCTCTTGATATTTCCCACAAGTGCAACTGACACATTCTCGAAGCTTTCAGAATCCAGTTGAATTAATTAGAATTCCATTTTCAGACTTGGCTCCAAGTTTAGAATGCAATTGACAGGATGGCCGGAATACGTCTCTATGATATATTTACCCATAATATTGGTAGGATTGATAGGAAATGGGCTTTCTTTATATGTCTACACTACTCCAAACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTCCTTCTTCTCACCTATCAT</pcr_primer_p1>
		<pcr_primer_p2>TAGAAGAGGGATAACTCGAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACTTCCTTCTTCTCACCTATCATTTGCCGATCAGATTTCAACTTTTTCTCATTCTTTATTTGTGTGCCAATTTCTTTCGAACTTTGTGTAGTTCTTGGCACTTTCCCTTCTTCAAAATGTGCCAGACAGTGAACGTCAAGTCTCTCCCCGGTAATTGCCATTCTCTTTTAATTACCATTTTCCTTTCTGTTTTTAAATAAAACGTCTCGATGTGTCGTCTGATGTGTTTTCGAGTTATCCCTCTTCTA</canonical_amplicon>
		<polymorphic_amplicon>ACTTCCTTCTTCTCACCTATCATTTGCCGATCAGATTTCAACTTTTTCTCATTCTTTATTTGTGTGCCAATTTCTTTCGAACTTTGTGTAGTTCTTGGCACTTTCCCTTYTTCAAAATGTGCCAGACAGTGAACGTCAAGTCTCTCCCCGGTAATTGCCATTCTCTTTTAATTACCATTTTCCTTTCTGTTTTTAAATAAAACGTCTCGATGTGTCGTCTGATGTGTTTTCGAGTTATCCCTCTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30235</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>163196</contig_pos>
        <strand>+</strand>
        <context>GACWGCAAAT[G/T]GGAAGAATGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATCCTTCGAAATTGTGTCATTCCTTATAATCGTTCGGAAGACTGCAAAT</left_flank>
        <right_flank>GGAAGAATGTAGGATGAACTTATTATTTTCCTTGCTATCGCTTAGCATCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCGGTTAGCATTACACTATAGACCAAAAATAAATTTATGAAATAAAAAGGGATCTGATTCCAATCTTCACTACATGCGTGTCGTTTACATAATTTATGGATCAAGTGGCAGAGAACAACTAGACAAAATACGGTAGCCTGAAAATCTTTGAACATTCGGTATTTATTGAATCGATTTCCACGGCTTTGCGTCGAGTTTTCTATTATTTTTCCCCCAAACAACTCGGAAAAGTTAATTTTGTAAAGTGAAAAAAATCGACTGAAAACGCACGAAAATCAAGAAAATAAATCCGGAAATTAAAAATGCTCTTAGGTTGCGTTGTGAGACATTCGGCCATGGCCGTTTTTTTTCCATATCTCCGATTGTTATATCAAAGTTATAATAGTCTCGAAGTAATCCTAAATAGTTCATATTCAATCAAAAGATTTGTGAAGTTTATAGTTCAGCCATCCTTCGAAATTGTGTCATTCCTTATAATCGTTCGGAAGACTGCAAATTGGAAGAATGTAGGATGAACTTATTATTTTCCTTGCTATCGCTTAGCATCGCTCTACACAGAAAACACGGACTTACTATAGGTCAAAAATAACTGTATGAAACAAAAAAGGGACCTGATTTGAATTCTTACTACATGCGCGCCTTTTTACAAATTTCATGAATTACGGGTGTGTGAAAATTAGACGAAAACCGAAGACTTGCTTTAGGAAAATTTTTAGCTGTTCCCAAATGTTTAAATTCATTCAGGAGAATCTTGTCTCTATAATACCTCGTTATTATTCTGGATGTAGTCCTAGTTCATATTCAATCGAAAGATATTTCATGCAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCAAGGCGGAAAACTTGTTTACTTCTTTCCGCTTGTGAGTTTTC</canonical>
            <polymorphic>TATCGGTTAGCATTACACTATAGACCAAAAATAAATTTATGAAATAAAAAGGGATCTGATTCCAATCTTCACTACATGCGTGTCGTTTACATAATTTATGGATCAAGTGGCAGAGAACAACTAGACAAAATACGGTAGCCTGAAAATCTTTGAACATTCGGTATTTATTGAATCGATTTCCACGGCTTTGCGTCGAGTTTTCTATTATTTTTCCCCCAAACAACTCGGAAAAGTTAATTTTGTAAAGTGAAAAAAATCGACTGAAAACGCACGAAAATCAAGAAAATAAATCCGGAAATTAAAAATGCTCTTAGGTTGCGTTGTGAGACATTCGGCCATGGCCGTTTTTTTTCCATATCTCCGATTGTTATATCAAAGTTATAATAGTCTCGAAGTAATCCTAAATAGTTCATATTCAATCAAAAGATTTGTGAAGTTTATAGTTCAGCCATCCTTCGAAATTGTGTCATTCCTTATAATCGTTCGGAAGACTGCAAATKGGAAGAATGTAGGATGAACTTATTATTTTCCTTGCTATCGCTTAGCATCGCTCTACACAGAAAACACGGACTTACTATAGGTCAAAAATAACTGTATGAAACAAAAAAGGGACCTGATTTGAATTCTTACTACATGCGCGCCTTTTTACAAATTTCATGAATTACGGGTGTGTGAAAATTAGACGAAAACCGAAGACTTGCTTTAGGAAAATTTTTAGCTGTTCCCAAATGTTTAAATTCATTCAGGAGAATCTTGTCTCTATAATACCTCGTTATTATTCTGGATGTAGTCCTAGTTCATATTCAATCGAAAGATATTTCATGCAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCAAGGCGGAAAACTTGTTTACTTCTTTCCGCTTGTGAGTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>163 143 125 121 76 68 61 59 37 33 33 29 26 17 9</canonical_bands>
                <polymorphic_bands>163 162 143 121 76 68 61 59 33 33 29 26 17 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGTTTATAGTTCAGCCATCCT</pcr_primer_p1>
		<pcr_primer_p2>CTAATTTTCACACACCCGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGTTTATAGTTCAGCCATCCTTCGAAATTGTGTCATTCCTTATAATCGTTCGGAAGACTGCAAATTGGAAGAATGTAGGATGAACTTATTATTTTCCTTGCTATCGCTTAGCATCGCTCTACACAGAAAACACGGACTTACTATAGGTCAAAAATAACTGTATGAAACAAAAAAGGGACCTGATTTGAATTCTTACTACATGCGCGCCTTTTTACAAATTTCATGAATTACGGGTGTGTGAAAATTAG</canonical_amplicon>
		<polymorphic_amplicon>GAAGTTTATAGTTCAGCCATCCTTCGAAATTGTGTCATTCCTTATAATCGTTCGGAAGACTGCAAATKGGAAGAATGTAGGATGAACTTATTATTTTCCTTGCTATCGCTTAGCATCGCTCTACACAGAAAACACGGACTTACTATAGGTCAAAAATAACTGTATGAAACAAAAAAGGGACCTGATTTGAATTCTTACTACATGCGCGCCTTTTTACAAATTTCATGAATTACGGGTGTGTGAAAATTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30236</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>163232</contig_pos>
        <strand>+</strand>
        <context>TTTTCCTTGC[A/T]ATCGCTTAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAAGACTGCAAATTGGAAGAATGTAGGATGAACTTATTATTTTCCTTGC</left_flank>
        <right_flank>ATCGCTTAGCATCGCTCTACACAGAAAACACGGACTTACTATAGGTCAAA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATGAAATAAAAAGGGATCTGATTCCAATCTTCACTACATGCGTGTCGTTTACATAATTTATGGATCAAGTGGCAGAGAACAACTAGACAAAATACGGTAGCCTGAAAATCTTTGAACATTCGGTATTTATTGAATCGATTTCCACGGCTTTGCGTCGAGTTTTCTATTATTTTTCCCCCAAACAACTCGGAAAAGTTAATTTTGTAAAGTGAAAAAAATCGACTGAAAACGCACGAAAATCAAGAAAATAAATCCGGAAATTAAAAATGCTCTTAGGTTGCGTTGTGAGACATTCGGCCATGGCCGTTTTTTTTCCATATCTCCGATTGTTATATCAAAGTTATAATAGTCTCGAAGTAATCCTAAATAGTTCATATTCAATCAAAAGATTTGTGAAGTTTATAGTTCAGCCATCCTTCGAAATTGTGTCATTCCTTATAATCGTTCGGAAGACTGCAAATTGGAAGAATGTAGGATGAACTTATTATTTTCCTTGCTATCGCTTAGCATCGCTCTACACAGAAAACACGGACTTACTATAGGTCAAAAATAACTGTATGAAACAAAAAAGGGACCTGATTTGAATTCTTACTACATGCGCGCCTTTTTACAAATTTCATGAATTACGGGTGTGTGAAAATTAGACGAAAACCGAAGACTTGCTTTAGGAAAATTTTTAGCTGTTCCCAAATGTTTAAATTCATTCAGGAGAATCTTGTCTCTATAATACCTCGTTATTATTCTGGATGTAGTCCTAGTTCATATTCAATCGAAAGATATTTCATGCAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCAAGGCGGAAAACTTGTTTACTTCTTTCCGCTTGTGAGTTTTCTACATCATTCCGCTTCAACAGCCTGTAAACATCACT</canonical>
            <polymorphic>TTATGAAATAAAAAGGGATCTGATTCCAATCTTCACTACATGCGTGTCGTTTACATAATTTATGGATCAAGTGGCAGAGAACAACTAGACAAAATACGGTAGCCTGAAAATCTTTGAACATTCGGTATTTATTGAATCGATTTCCACGGCTTTGCGTCGAGTTTTCTATTATTTTTCCCCCAAACAACTCGGAAAAGTTAATTTTGTAAAGTGAAAAAAATCGACTGAAAACGCACGAAAATCAAGAAAATAAATCCGGAAATTAAAAATGCTCTTAGGTTGCGTTGTGAGACATTCGGCCATGGCCGTTTTTTTTCCATATCTCCGATTGTTATATCAAAGTTATAATAGTCTCGAAGTAATCCTAAATAGTTCATATTCAATCAAAAGATTTGTGAAGTTTATAGTTCAGCCATCCTTCGAAATTGTGTCATTCCTTATAATCGTTCGGAAGACTGCAAATTGGAAGAATGTAGGATGAACTTATTATTTTCCTTGCWATCGCTTAGCATCGCTCTACACAGAAAACACGGACTTACTATAGGTCAAAAATAACTGTATGAAACAAAAAAGGGACCTGATTTGAATTCTTACTACATGCGCGCCTTTTTACAAATTTCATGAATTACGGGTGTGTGAAAATTAGACGAAAACCGAAGACTTGCTTTAGGAAAATTTTTAGCTGTTCCCAAATGTTTAAATTCATTCAGGAGAATCTTGTCTCTATAATACCTCGTTATTATTCTGGATGTAGTCCTAGTTCATATTCAATCGAAAGATATTTCATGCAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCAAGGCGGAAAACTTGTTTACTTCTTTCCGCTTGTGAGTTTTCTACATCATTCCGCTTCAACAGCCTGTAAACATCACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTTTATAGTTCAGCCATCCT</pcr_primer_p1>
		<pcr_primer_p2>CTAATTTTCACACACCCGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGTTTATAGTTCAGCCATCCTTCGAAATTGTGTCATTCCTTATAATCGTTCGGAAGACTGCAAATTGGAAGAATGTAGGATGAACTTATTATTTTCCTTGCTATCGCTTAGCATCGCTCTACACAGAAAACACGGACTTACTATAGGTCAAAAATAACTGTATGAAACAAAAAAGGGACCTGATTTGAATTCTTACTACATGCGCGCCTTTTTACAAATTTCATGAATTACGGGTGTGTGAAAATTAG</canonical_amplicon>
		<polymorphic_amplicon>GAAGTTTATAGTTCAGCCATCCTTCGAAATTGTGTCATTCCTTATAATCGTTCGGAAGACTGCAAATTGGAAGAATGTAGGATGAACTTATTATTTTCCTTGCWATCGCTTAGCATCGCTCTACACAGAAAACACGGACTTACTATAGGTCAAAAATAACTGTATGAAACAAAAAAGGGACCTGATTTGAATTCTTACTACATGCGCGCCTTTTTACAAATTTCATGAATTACGGGTGTGTGAAAATTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30237</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>163575</contig_pos>
        <strand>+</strand>
        <context>GGGATTGTTC[A/G]AAAAACAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTC</left_flank>
        <right_flank>AAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAATAGTCTCGAAGTAATCCTAAATAGTTCATATTCAATCAAAAGATTTGTGAAGTTTATAGTTCAGCCATCCTTCGAAATTGTGTCATTCCTTATAATCGTTCGGAAGACTGCAAATTGGAAGAATGTAGGATGAACTTATTATTTTCCTTGCTATCGCTTAGCATCGCTCTACACAGAAAACACGGACTTACTATAGGTCAAAAATAACTGTATGAAACAAAAAAGGGACCTGATTTGAATTCTTACTACATGCGCGCCTTTTTACAAATTTCATGAATTACGGGTGTGTGAAAATTAGACGAAAACCGAAGACTTGCTTTAGGAAAATTTTTAGCTGTTCCCAAATGTTTAAATTCATTCAGGAGAATCTTGTCTCTATAATACCTCGTTATTATTCTGGATGTAGTCCTAGTTCATATTCAATCGAAAGATATTTCATGCAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCAAGGCGGAAAACTTGTTTACTTCTTTCCGCTTGTGAGTTTTCTACATCATTCCGCTTCAACAGCCTGTAAACATCACTGTTTTTATAATAAGCAACTAGAATGTGACCTCAAGCAAAACATTCGGTATGGCCGAATGTACAGTAGATATGTAAATGGAGAAAACATGGGCATAGGGAGAGTGCAAGCAAAAATTGAATATTCCAGAATCGGATGAGTGAAAATTCCAAGTTGTGCACTCAAGTACGAAATTACGCCAATCACGAAAATCATTGGAATGGCGGCTTGAATTGTGAGACACTAAAAAATGCTTTTTAGAAAAAGAATAAAAGAAAACTCTCACTTTTAGAATTTGAGAATGATACGATTTTAAATCATTAGAAAGCATTTCCGTCTTTCTTAATAAATTGTTCATAACCTCAT</canonical>
            <polymorphic>TATAATAGTCTCGAAGTAATCCTAAATAGTTCATATTCAATCAAAAGATTTGTGAAGTTTATAGTTCAGCCATCCTTCGAAATTGTGTCATTCCTTATAATCGTTCGGAAGACTGCAAATTGGAAGAATGTAGGATGAACTTATTATTTTCCTTGCTATCGCTTAGCATCGCTCTACACAGAAAACACGGACTTACTATAGGTCAAAAATAACTGTATGAAACAAAAAAGGGACCTGATTTGAATTCTTACTACATGCGCGCCTTTTTACAAATTTCATGAATTACGGGTGTGTGAAAATTAGACGAAAACCGAAGACTTGCTTTAGGAAAATTTTTAGCTGTTCCCAAATGTTTAAATTCATTCAGGAGAATCTTGTCTCTATAATACCTCGTTATTATTCTGGATGTAGTCCTAGTTCATATTCAATCGAAAGATATTTCATGCAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCRAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCAAGGCGGAAAACTTGTTTACTTCTTTCCGCTTGTGAGTTTTCTACATCATTCCGCTTCAACAGCCTGTAAACATCACTGTTTTTATAATAAGCAACTAGAATGTGACCTCAAGCAAAACATTCGGTATGGCCGAATGTACAGTAGATATGTAAATGGAGAAAACATGGGCATAGGGAGAGTGCAAGCAAAAATTGAATATTCCAGAATCGGATGAGTGAAAATTCCAAGTTGTGCACTCAAGTACGAAATTACGCCAATCACGAAAATCATTGGAATGGCGGCTTGAATTGTGAGACACTAAAAAATGCTTTTTAGAAAAAGAATAAAAGAAAACTCTCACTTTTAGAATTTGAGAATGATACGATTTTAAATCATTAGAAAGCATTTCCGTCTTTCTTAATAAATTGTTCATAACCTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCAGGAGAATCTTGTCTCTA</pcr_primer_p1>
		<pcr_primer_p2>AGCGGAAAGAAGTAAACAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTCAGGAGAATCTTGTCTCTATAATACCTCGTTATTATTCTGGATGTAGTCCTAGTTCATATTCAATCGAAAGATATTTCATGCAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCAAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCAAGGCGGAAAACTTGTTTACTTCTTTCCGCT</canonical_amplicon>
		<polymorphic_amplicon>CATTCAGGAGAATCTTGTCTCTATAATACCTCGTTATTATTCTGGATGTAGTCCTAGTTCATATTCAATCGAAAGATATTTCATGCAAAGACAATAGCTCTTCATTCTTGATACAGAAATTTATCATTAGGGATTGTTCRAAAAACAAAAAAGAGTTCTACATGGGAAAGAAATAGCATGCCAGTCCACAAAAAATTAACGAATCTTGCATTTTCAGCCAAGGCGGAAAACTTGTTTACTTCTTTCCGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30238</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>201191</contig_pos>
        <strand>+</strand>
        <context>ACCTCATTCG[A/G]TACTTTATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCACACTGGCATTTCAGACAGTGGAAAAATTCGTTGGAGTACCTCATTCG</left_flank>
        <right_flank>TACTTTATTTCAAGCGAGAAAAACTGCCCAAAAAGATGTGGACTTATATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATTTTGGTGTGAATGCATGCAGAGCATGTGCGGCCTTTTTCAGGTAAGAAACAAGAAAGGAAAAAAAATTCAAGTTTGAAATTTCAGACGAATGATTCTTGGCACTGGATTCCGACAAAAGTGCCGACTGACGAAGAATTGTAAGCCTAAAGATGGACGGTAATTGTTTTTTATTCTTCTTGAAAATCTCAAATGTTTGTTATAGATGGTTTTGCAAGAAATGCCGATTGGATAAATGCTACCGTTTAGGAATGACACCAGATAGTTAGTCCAGATTTTTGAACGAATCCAAGTAGTAAAGTACTGAATTCAGATATCCAGCATGACAGAGACGCCCATCTCAGTTCCGAGTTGTTTCTGGAAAATCATAACAAACGGAAACTACAAGTGAGTGTTTTACCAACTGTGAGTTTTTTTACCAACTGCGAGCATAAATTGAAAAATGAGCCACACTGGCATTTCAGACAGTGGAAAAATTCGTTGGAGTACCTCATTCGGTACTTTATTTCAAGCGAGAAAAACTGCCCAAAAAGATGTGGACTTATATTGATTTAAGCAAACTTGTTCAAAGAACCGAGAAGATTCTGAAGACAGAACCTAGTTTTGATTCTGAGACATTCAACATGACGACGTTGGAAAAGCTCACGTTTGGATTAAGAGAAGCTAGAAAAAATCAGCAACAATTCCCGGCCATAATGAAATCAATGGGAAAAGAGGAAAATTGTTTTATATGGGAGCAACAACTGATGACTGCTGCCAATTGGATAATGTACTTTGATGAATTCCGAGCGCTTCCATTCGACCAAAAATTCGCAATGATCAAGTGTATGTGGCATCTATGGGGACGATTGGAACGGTTAGCAATGACCGCTGAAATGAGAGTTAATGGATATTGTGGAAAAAGAGTAGGTTGAAGTTCAGCTGGGATGATTGTATGTCGATTTTTAGGATTTCGTAATTTCACATGATGCCCTGTTAGACTATGATAACGTGGACTA</canonical>
            <polymorphic>TCATTTTGGTGTGAATGCATGCAGAGCATGTGCGGCCTTTTTCAGGTAAGAAACAAGAAAGGAAAAAAAATTCAAGTTTGAAATTTCAGACGAATGATTCTTGGCACTGGATTCCGACAAAAGTGCCGACTGACGAAGAATTGTAAGCCTAAAGATGGACGGTAATTGTTTTTTATTCTTCTTGAAAATCTCAAATGTTTGTTATAGATGGTTTTGCAAGAAATGCCGATTGGATAAATGCTACCGTTTAGGAATGACACCAGATAGTTAGTCCAGATTTTTGAACGAATCCAAGTAGTAAAGTACTGAATTCAGATATCCAGCATGACAGAGACGCCCATCTCAGTTCCGAGTTGTTTCTGGAAAATCATAACAAACGGAAACTACAAGTGAGTGTTTTACCAACTGTGAGTTTTTTTACCAACTGCGAGCATAAATTGAAAAATGAGCCACACTGGCATTTCAGACAGTGGAAAAATTCGTTGGAGTACCTCATTCGRTACTTTATTTCAAGCGAGAAAAACTGCCCAAAAAGATGTGGACTTATATTGATTTAAGCAAACTTGTTCAAAGAACCGAGAAGATTCTGAAGACAGAACCTAGTTTTGATTCTGAGACATTCAACATGACGACGTTGGAAAAGCTCACGTTTGGATTAAGAGAAGCTAGAAAAAATCAGCAACAATTCCCGGCCATAATGAAATCAATGGGAAAAGAGGAAAATTGTTTTATATGGGAGCAACAACTGATGACTGCTGCCAATTGGATAATGTACTTTGATGAATTCCGAGCGCTTCCATTCGACCAAAAATTCGCAATGATCAAGTGTATGTGGCATCTATGGGGACGATTGGAACGGTTAGCAATGACCGCTGAAATGAGAGTTAATGGATATTGTGGAAAAAGAGTAGGTTGAAGTTCAGCTGGGATGATTGTATGTCGATTTTTAGGATTTCGTAATTTCACATGATGCCCTGTTAGACTATGATAACGTGGACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>304 272 227 185 12</canonical_bands>
                <polymorphic_bands>304 284 227 185</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCATAACAAACGGAAACTACA</pcr_primer_p1>
		<pcr_primer_p2>CAGAATCAAAACTAGGTTCTGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATCATAACAAACGGAAACTACAAGTGAGTGTTTTACCAACTGTGAGTTTTTTTACCAACTGCGAGCATAAATTGAAAAATGAGCCACACTGGCATTTCAGACAGTGGAAAAATTCGTTGGAGTACCTCATTCGGTACTTTATTTCAAGCGAGAAAAACTGCCCAAAAAGATGTGGACTTATATTGATTTAAGCAAACTTGTTCAAAGAACCGAGAAGATTCTGAAGACAGAACCTAGTTTTGATTCTG</canonical_amplicon>
		<polymorphic_amplicon>AATCATAACAAACGGAAACTACAAGTGAGTGTTTTACCAACTGTGAGTTTTTTTACCAACTGCGAGCATAAATTGAAAAATGAGCCACACTGGCATTTCAGACAGTGGAAAAATTCGTTGGAGTACCTCATTCGRTACTTTATTTCAAGCGAGAAAAACTGCCCAAAAAGATGTGGACTTATATTGATTTAAGCAAACTTGTTCAAAGAACCGAGAAGATTCTGAAGACAGAACCTAGTTTTGATTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30239</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>201251</contig_pos>
        <strand>+</strand>
        <context>TGATTTAAGC[A/C]AACTTGTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCAAGCGAGAAAAACTGCCCAAAAAGATGTGGACTTATATTGATTTAAGC</left_flank>
        <right_flank>AACTTGTTCAAAGAACCGAGAAGATTCTGAAGACAGAACCTAGTTTTGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAAAAAAATTCAAGTTTGAAATTTCAGACGAATGATTCTTGGCACTGGATTCCGACAAAAGTGCCGACTGACGAAGAATTGTAAGCCTAAAGATGGACGGTAATTGTTTTTTATTCTTCTTGAAAATCTCAAATGTTTGTTATAGATGGTTTTGCAAGAAATGCCGATTGGATAAATGCTACCGTTTAGGAATGACACCAGATAGTTAGTCCAGATTTTTGAACGAATCCAAGTAGTAAAGTACTGAATTCAGATATCCAGCATGACAGAGACGCCCATCTCAGTTCCGAGTTGTTTCTGGAAAATCATAACAAACGGAAACTACAAGTGAGTGTTTTACCAACTGTGAGTTTTTTTACCAACTGCGAGCATAAATTGAAAAATGAGCCACACTGGCATTTCAGACAGTGGAAAAATTCGTTGGAGTACCTCATTCGGTACTTTATTTCAAGCGAGAAAAACTGCCCAAAAAGATGTGGACTTATATTGATTTAAGCAAACTTGTTCAAAGAACCGAGAAGATTCTGAAGACAGAACCTAGTTTTGATTCTGAGACATTCAACATGACGACGTTGGAAAAGCTCACGTTTGGATTAAGAGAAGCTAGAAAAAATCAGCAACAATTCCCGGCCATAATGAAATCAATGGGAAAAGAGGAAAATTGTTTTATATGGGAGCAACAACTGATGACTGCTGCCAATTGGATAATGTACTTTGATGAATTCCGAGCGCTTCCATTCGACCAAAAATTCGCAATGATCAAGTGTATGTGGCATCTATGGGGACGATTGGAACGGTTAGCAATGACCGCTGAAATGAGAGTTAATGGATATTGTGGAAAAAGAGTAGGTTGAAGTTCAGCTGGGATGATTGTATGTCGATTTTTAGGATTTCGTAATTTCACATGATGCCCTGTTAGACTATGATAACGTGGACTACGATCCTTCGTGGAGCACTTCGTATTCGAAAGACGAGTTGTTGTAGTGAGTGATTTTCAG</canonical>
            <polymorphic>GGAAAAAAAATTCAAGTTTGAAATTTCAGACGAATGATTCTTGGCACTGGATTCCGACAAAAGTGCCGACTGACGAAGAATTGTAAGCCTAAAGATGGACGGTAATTGTTTTTTATTCTTCTTGAAAATCTCAAATGTTTGTTATAGATGGTTTTGCAAGAAATGCCGATTGGATAAATGCTACCGTTTAGGAATGACACCAGATAGTTAGTCCAGATTTTTGAACGAATCCAAGTAGTAAAGTACTGAATTCAGATATCCAGCATGACAGAGACGCCCATCTCAGTTCCGAGTTGTTTCTGGAAAATCATAACAAACGGAAACTACAAGTGAGTGTTTTACCAACTGTGAGTTTTTTTACCAACTGCGAGCATAAATTGAAAAATGAGCCACACTGGCATTTCAGACAGTGGAAAAATTCGTTGGAGTACCTCATTCGGTACTTTATTTCAAGCGAGAAAAACTGCCCAAAAAGATGTGGACTTATATTGATTTAAGCMAACTTGTTCAAAGAACCGAGAAGATTCTGAAGACAGAACCTAGTTTTGATTCTGAGACATTCAACATGACGACGTTGGAAAAGCTCACGTTTGGATTAAGAGAAGCTAGAAAAAATCAGCAACAATTCCCGGCCATAATGAAATCAATGGGAAAAGAGGAAAATTGTTTTATATGGGAGCAACAACTGATGACTGCTGCCAATTGGATAATGTACTTTGATGAATTCCGAGCGCTTCCATTCGACCAAAAATTCGCAATGATCAAGTGTATGTGGCATCTATGGGGACGATTGGAACGGTTAGCAATGACCGCTGAAATGAGAGTTAATGGATATTGTGGAAAAAGAGTAGGTTGAAGTTCAGCTGGGATGATTGTATGTCGATTTTTAGGATTTCGTAATTTCACATGATGCCCTGTTAGACTATGATAACGTGGACTACGATCCTTCGTGGAGCACTTCGTATTCGAAAGACGAGTTGTTGTAGTGAGTGATTTTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCATAACAAACGGAAACTACA</pcr_primer_p1>
		<pcr_primer_p2>CAGAATCAAAACTAGGTTCTGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATCATAACAAACGGAAACTACAAGTGAGTGTTTTACCAACTGTGAGTTTTTTTACCAACTGCGAGCATAAATTGAAAAATGAGCCACACTGGCATTTCAGACAGTGGAAAAATTCGTTGGAGTACCTCATTCGGTACTTTATTTCAAGCGAGAAAAACTGCCCAAAAAGATGTGGACTTATATTGATTTAAGCAAACTTGTTCAAAGAACCGAGAAGATTCTGAAGACAGAACCTAGTTTTGATTCTG</canonical_amplicon>
		<polymorphic_amplicon>AATCATAACAAACGGAAACTACAAGTGAGTGTTTTACCAACTGTGAGTTTTTTTACCAACTGCGAGCATAAATTGAAAAATGAGCCACACTGGCATTTCAGACAGTGGAAAAATTCGTTGGAGTACCTCATTCGGTACTTTATTTCAAGCGAGAAAAACTGCCCAAAAAGATGTGGACTTATATTGATTTAAGCMAACTTGTTCAAAGAACCGAGAAGATTCTGAAGACAGAACCTAGTTTTGATTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30240</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>294858</contig_pos>
        <strand>+</strand>
        <context>ACGTTAGATT[C/T]GTASGAGATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGAACTTGAGATGCTGACTTGTTCGACATCGACGGAAGACGTTAGATT</left_flank>
        <right_flank>GTAGGAGATGCTGAAACATCTGATGGATATTGTCAAACAGCTTTAGAGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGTCTAGACGAACTTGAACTGTATACCACTGATGCGGGAATGCAAACTGAACCAAAGATGATGGTGGATCAGCAAGATTTTGCAACTCCAAAGAGTTTGGACATTATCAAAAATTGCAGTACACAAACTACTTTCAGGTAACCTTTTTTGAATATTTATTTTCGTACAAATTCAAAATATTCTTTCAGTACATTCCATCTACCACAAAAGGTTTATGAATCAGCAAGCACTTCAAGTGATGAGGAAGATGTGAAATCGGAGAGTGATAAAGACAAGAAATCAGAAAACGAAGTGTTCTTTATGACAAACGCGGGAGTACAAACTATGCATACGTCATTCCATTTGGAGGATAAACCGAAGATAGTTGAAGAAGAGAAACTTCAGAAAGAAGAAAAAACAGATATGGAGGAGATGCCGTTGTTTTTGAAAAATTCAGAATGCCAGACGTTTGAACTTGAGATGCTGACTTGTTCGACATCGACGGAAGACGTTAGATTCGTAGGAGATGCTGAAACATCTGATGGATATTGTCAAACAGCTTTAGAGACGAAGAATTTTGAAGTTCAGACAGTCGTGAAAGATTGTAAGCAATACTAAAATTCAGAGTTTCAATTTTTCAATTTTTCAGATCTCGAAACCACAATGCAAACTGAAGATCCATCTCTGGTAACAGATGCATGCCAAACAGAGTCGATCGAAGGAACTACAGTTCATTCACAAACTGATGCTCCCAACACAAGATCGTTCATTTGTCAAACTGAGAGTGCCGTTGAGCCAGAAGTTCCTCCTGTGCCTTCAGTAGAATCTGTTCCTGTGGAATGTCAAACTGACACGTTAGATCTAGAAGAAATAGAAGTGCAAACGGAAATAGAAACATCGGTAACCGAATCGCAGACAGAAAATGCCATAGTTGATGATGTAGAAATGCAGACAGAATTAGTGAGTTTATTGTAAAACCTGTAATAGAAATTCCCAATGATTTTTAACTTTGAGCCAAT</canonical>
            <polymorphic>AAAGTCTAGACGAACTTGAACTGTATACCACTGATGCGGGAATGCAAACTGAACCAAAGATGATGGTGGATCAGCAAGATTTTGCAACTCCAAAGAGTTTGGACATTATCAAAAATTGCAGTACACAAACTACTTTCAGGTAACCTTTTTTGAATATTTATTTTCGTACAAATTCAAAATATTCTTTCAGTACATTCCATCTACCACAAAAGGTTTATGAATCAGCAAGCACTTCAAGTGATGAGGAAGATGTGAAATCGGAGAGTGATAAAGACAAGAAATCAGAAAACGAAGTGTTCTTTATGACAAACGCGGGAGTACAAACTATGCATACGTCATTCCATTTGGAGGATAAACCGAAGATAGTTGAAGAAGAGAAACTTCAGAAAGAAGAAAAAACAGATATGGAGGAGATGCCGTTGTTTTTGAAAAATTCAGAATGCCAGACGTTTGAACTTGAGATGCTGACTTGTTCGACATCGACGGAAGACGTTAGATTYGTAGGAGATGCTGAAACATCTGATGGATATTGTCAAACAGCTTTAGAGACGAAGAATTTTGAAGTTCAGACAGTCGTGAAAGATTGTAAGCAATACTAAAATTCAGAGTTTCAATTTTTCAATTTTTCAGATCTCGAAACCACAATGCAAACTGAAGATCCATCTCTGGTAACAGATGCATGCCAAACAGAGTCGATCGAAGGAACTACAGTTCATTCACAAACTGATGCTCCCAACACAAGATCGTTCATTTGTCAAACTGAGAGTGCCGTTGAGCCAGAAGTTCCTCCTGTGCCTTCAGTAGAATCTGTTCCTGTGGAATGTCAAACTGACACGTTAGATCTAGAAGAAATAGAAGTGCAAACGGAAATAGAAACATCGGTAACCGAATCGCAGACAGAAAATGCCATAGTTGATGATGTAGAAATGCAGACAGAATTAGTGAGTTTATTGTAAAACCTGTAATAGAAATTCCCAATGATTTTTAACTTTGAGCCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>277 219 194 114 112 84</canonical_bands>
                <polymorphic_bands>471 219 114 112 84</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>308 277 219 112 84</canonical_bands>
                <polymorphic_bands>585 219 112 84</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAAACTTCAGAAAGAAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATTGAAAAATTGAAACTCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGAAACTTCAGAAAGAAGAAAAAACAGATATGGAGGAGATGCCGTTGTTTTTGAAAAATTCAGAATGCCAGACGTTTGAACTTGAGATGCTGACTTGTTCGACATCGACGGAAGACGTTAGATTCGTAGGAGATGCTGAAACATCTGATGGATATTGTCAAACAGCTTTAGAGACGAAGAATTTTGAAGTTCAGACAGTCGTGAAAGATTGTAAGCAATACTAAAATTCAGAGTTTCAATTTTTCAATT</canonical_amplicon>
		<polymorphic_amplicon>GAGAAACTTCAGAAAGAAGAAAAAACAGATATGGAGGAGATGCCGTTGTTTTTGAAAAATTCAGAATGCCAGACGTTTGAACTTGAGATGCTGACTTGTTCGACATCGACGGAAGACGTTAGATTYGTAGGAGATGCTGAAACATCTGATGGATATTGTCAAACAGCTTTAGAGACGAAGAATTTTGAAGTTCAGACAGTCGTGAAAGATTGTAAGCAATACTAAAATTCAGAGTTTCAATTTTTCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30241</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>294862</contig_pos>
        <strand>+</strand>
        <context>TAGATTYGTA[C/G]GAGATGCTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AACTTGAGATGCTGACTTGTTCGACATCGACGGAAGACGTTAGATTCGTA</left_flank>
        <right_flank>GAGATGCTGAAACATCTGATGGATATTGTCAAACAGCTTTAGAGACGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAGACGAACTTGAACTGTATACCACTGATGCGGGAATGCAAACTGAACCAAAGATGATGGTGGATCAGCAAGATTTTGCAACTCCAAAGAGTTTGGACATTATCAAAAATTGCAGTACACAAACTACTTTCAGGTAACCTTTTTTGAATATTTATTTTCGTACAAATTCAAAATATTCTTTCAGTACATTCCATCTACCACAAAAGGTTTATGAATCAGCAAGCACTTCAAGTGATGAGGAAGATGTGAAATCGGAGAGTGATAAAGACAAGAAATCAGAAAACGAAGTGTTCTTTATGACAAACGCGGGAGTACAAACTATGCATACGTCATTCCATTTGGAGGATAAACCGAAGATAGTTGAAGAAGAGAAACTTCAGAAAGAAGAAAAAACAGATATGGAGGAGATGCCGTTGTTTTTGAAAAATTCAGAATGCCAGACGTTTGAACTTGAGATGCTGACTTGTTCGACATCGACGGAAGACGTTAGATTCGTAGGAGATGCTGAAACATCTGATGGATATTGTCAAACAGCTTTAGAGACGAAGAATTTTGAAGTTCAGACAGTCGTGAAAGATTGTAAGCAATACTAAAATTCAGAGTTTCAATTTTTCAATTTTTCAGATCTCGAAACCACAATGCAAACTGAAGATCCATCTCTGGTAACAGATGCATGCCAAACAGAGTCGATCGAAGGAACTACAGTTCATTCACAAACTGATGCTCCCAACACAAGATCGTTCATTTGTCAAACTGAGAGTGCCGTTGAGCCAGAAGTTCCTCCTGTGCCTTCAGTAGAATCTGTTCCTGTGGAATGTCAAACTGACACGTTAGATCTAGAAGAAATAGAAGTGCAAACGGAAATAGAAACATCGGTAACCGAATCGCAGACAGAAAATGCCATAGTTGATGATGTAGAAATGCAGACAGAATTAGTGAGTTTATTGTAAAACCTGTAATAGAAATTCCCAATGATTTTTAACTTTGAGCCAATTTAT</canonical>
            <polymorphic>TCTAGACGAACTTGAACTGTATACCACTGATGCGGGAATGCAAACTGAACCAAAGATGATGGTGGATCAGCAAGATTTTGCAACTCCAAAGAGTTTGGACATTATCAAAAATTGCAGTACACAAACTACTTTCAGGTAACCTTTTTTGAATATTTATTTTCGTACAAATTCAAAATATTCTTTCAGTACATTCCATCTACCACAAAAGGTTTATGAATCAGCAAGCACTTCAAGTGATGAGGAAGATGTGAAATCGGAGAGTGATAAAGACAAGAAATCAGAAAACGAAGTGTTCTTTATGACAAACGCGGGAGTACAAACTATGCATACGTCATTCCATTTGGAGGATAAACCGAAGATAGTTGAAGAAGAGAAACTTCAGAAAGAAGAAAAAACAGATATGGAGGAGATGCCGTTGTTTTTGAAAAATTCAGAATGCCAGACGTTTGAACTTGAGATGCTGACTTGTTCGACATCGACGGAAGACGTTAGATTCGTASGAGATGCTGAAACATCTGATGGATATTGTCAAACAGCTTTAGAGACGAAGAATTTTGAAGTTCAGACAGTCGTGAAAGATTGTAAGCAATACTAAAATTCAGAGTTTCAATTTTTCAATTTTTCAGATCTCGAAACCACAATGCAAACTGAAGATCCATCTCTGGTAACAGATGCATGCCAAACAGAGTCGATCGAAGGAACTACAGTTCATTCACAAACTGATGCTCCCAACACAAGATCGTTCATTTGTCAAACTGAGAGTGCCGTTGAGCCAGAAGTTCCTCCTGTGCCTTCAGTAGAATCTGTTCCTGTGGAATGTCAAACTGACACGTTAGATCTAGAAGAAATAGAAGTGCAAACGGAAATAGAAACATCGGTAACCGAATCGCAGACAGAAAATGCCATAGTTGATGATGTAGAAATGCAGACAGAATTAGTGAGTTTATTGTAAAACCTGTAATAGAAATTCCCAATGATTTTTAACTTTGAGCCAATTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAACTTCAGAAAGAAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATTGAAAAATTGAAACTCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGAAACTTCAGAAAGAAGAAAAAACAGATATGGAGGAGATGCCGTTGTTTTTGAAAAATTCAGAATGCCAGACGTTTGAACTTGAGATGCTGACTTGTTCGACATCGACGGAAGACGTTAGATTCGTAGGAGATGCTGAAACATCTGATGGATATTGTCAAACAGCTTTAGAGACGAAGAATTTTGAAGTTCAGACAGTCGTGAAAGATTGTAAGCAATACTAAAATTCAGAGTTTCAATTTTTCAATT</canonical_amplicon>
		<polymorphic_amplicon>GAGAAACTTCAGAAAGAAGAAAAAACAGATATGGAGGAGATGCCGTTGTTTTTGAAAAATTCAGAATGCCAGACGTTTGAACTTGAGATGCTGACTTGTTCGACATCGACGGAAGACGTTAGATTCGTASGAGATGCTGAAACATCTGATGGATATTGTCAAACAGCTTTAGAGACGAAGAATTTTGAAGTTCAGACAGTCGTGAAAGATTGTAAGCAATACTAAAATTCAGAGTTTCAATTTTTCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30242</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>294890</contig_pos>
        <strand>+</strand>
        <context>GATGGATATT[A/G]TCAAACAGCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACGGAAGACGTTAGATTCGTAGGAGATGCTGAAACATCTGATGGATATT</left_flank>
        <right_flank>TCAAACAGCTTTAGAGACGAAGAATTTTGAAGTTCAGACAGTCGTGAAAG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGCGGGAATGCAAACTGAACCAAAGATGATGGTGGATCAGCAAGATTTTGCAACTCCAAAGAGTTTGGACATTATCAAAAATTGCAGTACACAAACTACTTTCAGGTAACCTTTTTTGAATATTTATTTTCGTACAAATTCAAAATATTCTTTCAGTACATTCCATCTACCACAAAAGGTTTATGAATCAGCAAGCACTTCAAGTGATGAGGAAGATGTGAAATCGGAGAGTGATAAAGACAAGAAATCAGAAAACGAAGTGTTCTTTATGACAAACGCGGGAGTACAAACTATGCATACGTCATTCCATTTGGAGGATAAACCGAAGATAGTTGAAGAAGAGAAACTTCAGAAAGAAGAAAAAACAGATATGGAGGAGATGCCGTTGTTTTTGAAAAATTCAGAATGCCAGACGTTTGAACTTGAGATGCTGACTTGTTCGACATCGACGGAAGACGTTAGATTCGTAGGAGATGCTGAAACATCTGATGGATATTGTCAAACAGCTTTAGAGACGAAGAATTTTGAAGTTCAGACAGTCGTGAAAGATTGTAAGCAATACTAAAATTCAGAGTTTCAATTTTTCAATTTTTCAGATCTCGAAACCACAATGCAAACTGAAGATCCATCTCTGGTAACAGATGCATGCCAAACAGAGTCGATCGAAGGAACTACAGTTCATTCACAAACTGATGCTCCCAACACAAGATCGTTCATTTGTCAAACTGAGAGTGCCGTTGAGCCAGAAGTTCCTCCTGTGCCTTCAGTAGAATCTGTTCCTGTGGAATGTCAAACTGACACGTTAGATCTAGAAGAAATAGAAGTGCAAACGGAAATAGAAACATCGGTAACCGAATCGCAGACAGAAAATGCCATAGTTGATGATGTAGAAATGCAGACAGAATTAGTGAGTTTATTGTAAAACCTGTAATAGAAATTCCCAATGATTTTTAACTTTGAGCCAATTTATCTCGGTGCCTGTTACAGATAACAAACAG</canonical>
            <polymorphic>GATGCGGGAATGCAAACTGAACCAAAGATGATGGTGGATCAGCAAGATTTTGCAACTCCAAAGAGTTTGGACATTATCAAAAATTGCAGTACACAAACTACTTTCAGGTAACCTTTTTTGAATATTTATTTTCGTACAAATTCAAAATATTCTTTCAGTACATTCCATCTACCACAAAAGGTTTATGAATCAGCAAGCACTTCAAGTGATGAGGAAGATGTGAAATCGGAGAGTGATAAAGACAAGAAATCAGAAAACGAAGTGTTCTTTATGACAAACGCGGGAGTACAAACTATGCATACGTCATTCCATTTGGAGGATAAACCGAAGATAGTTGAAGAAGAGAAACTTCAGAAAGAAGAAAAAACAGATATGGAGGAGATGCCGTTGTTTTTGAAAAATTCAGAATGCCAGACGTTTGAACTTGAGATGCTGACTTGTTCGACATCGACGGAAGACGTTAGATTCGTAGGAGATGCTGAAACATCTGATGGATATTRTCAAACAGCTTTAGAGACGAAGAATTTTGAAGTTCAGACAGTCGTGAAAGATTGTAAGCAATACTAAAATTCAGAGTTTCAATTTTTCAATTTTTCAGATCTCGAAACCACAATGCAAACTGAAGATCCATCTCTGGTAACAGATGCATGCCAAACAGAGTCGATCGAAGGAACTACAGTTCATTCACAAACTGATGCTCCCAACACAAGATCGTTCATTTGTCAAACTGAGAGTGCCGTTGAGCCAGAAGTTCCTCCTGTGCCTTCAGTAGAATCTGTTCCTGTGGAATGTCAAACTGACACGTTAGATCTAGAAGAAATAGAAGTGCAAACGGAAATAGAAACATCGGTAACCGAATCGCAGACAGAAAATGCCATAGTTGATGATGTAGAAATGCAGACAGAATTAGTGAGTTTATTGTAAAACCTGTAATAGAAATTCCCAATGATTTTTAACTTTGAGCCAATTTATCTCGGTGCCTGTTACAGATAACAAACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAACTTCAGAAAGAAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATTGAAAAATTGAAACTCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGAAACTTCAGAAAGAAGAAAAAACAGATATGGAGGAGATGCCGTTGTTTTTGAAAAATTCAGAATGCCAGACGTTTGAACTTGAGATGCTGACTTGTTCGACATCGACGGAAGACGTTAGATTCGTAGGAGATGCTGAAACATCTGATGGATATTGTCAAACAGCTTTAGAGACGAAGAATTTTGAAGTTCAGACAGTCGTGAAAGATTGTAAGCAATACTAAAATTCAGAGTTTCAATTTTTCAATT</canonical_amplicon>
		<polymorphic_amplicon>GAGAAACTTCAGAAAGAAGAAAAAACAGATATGGAGGAGATGCCGTTGTTTTTGAAAAATTCAGAATGCCAGACGTTTGAACTTGAGATGCTGACTTGTTCGACATCGACGGAAGACGTTAGATTCGTAGGAGATGCTGAAACATCTGATGGATATTRTCAAACAGCTTTAGAGACGAAGAATTTTGAAGTTCAGACAGTCGTGAAAGATTGTAAGCAATACTAAAATTCAGAGTTTCAATTTTTCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30243</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>295090</contig_pos>
        <strand>+</strand>
        <context>AACTGATGCT[C/T]CCAACACAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCAAACAGAGTCGATCGAAGGAACTACAGTTCATTCACAAACTGATGCT</left_flank>
        <right_flank>CCAACACAAGATCGTTCATTTGTCAAACTGAGAGTGCCGTTGAGCCAGAA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAAGTGATGAGGAAGATGTGAAATCGGAGAGTGATAAAGACAAGAAATCAGAAAACGAAGTGTTCTTTATGACAAACGCGGGAGTACAAACTATGCATACGTCATTCCATTTGGAGGATAAACCGAAGATAGTTGAAGAAGAGAAACTTCAGAAAGAAGAAAAAACAGATATGGAGGAGATGCCGTTGTTTTTGAAAAATTCAGAATGCCAGACGTTTGAACTTGAGATGCTGACTTGTTCGACATCGACGGAAGACGTTAGATTCGTAGGAGATGCTGAAACATCTGATGGATATTGTCAAACAGCTTTAGAGACGAAGAATTTTGAAGTTCAGACAGTCGTGAAAGATTGTAAGCAATACTAAAATTCAGAGTTTCAATTTTTCAATTTTTCAGATCTCGAAACCACAATGCAAACTGAAGATCCATCTCTGGTAACAGATGCATGCCAAACAGAGTCGATCGAAGGAACTACAGTTCATTCACAAACTGATGCTCCCAACACAAGATCGTTCATTTGTCAAACTGAGAGTGCCGTTGAGCCAGAAGTTCCTCCTGTGCCTTCAGTAGAATCTGTTCCTGTGGAATGTCAAACTGACACGTTAGATCTAGAAGAAATAGAAGTGCAAACGGAAATAGAAACATCGGTAACCGAATCGCAGACAGAAAATGCCATAGTTGATGATGTAGAAATGCAGACAGAATTAGTGAGTTTATTGTAAAACCTGTAATAGAAATTCCCAATGATTTTTAACTTTGAGCCAATTTATCTCGGTGCCTGTTACAGATAACAAACAGTGTACAACTGATAATTTTAACCATAAACGCTTCTATCACAGGCCTTATGGTATAAAACTGAAATTTAGGAAATCATACACCGTTTCAGACTGAAACAATAACTTCCGAATCCCAGACAGAAAAAGTGACTGTTGGTGATCTGGAGATGCAGACTGACCAGGTGAGTCTTTTGAGAATTTGCATCATAGTAACCGTGGTTT</canonical>
            <polymorphic>TTCAAGTGATGAGGAAGATGTGAAATCGGAGAGTGATAAAGACAAGAAATCAGAAAACGAAGTGTTCTTTATGACAAACGCGGGAGTACAAACTATGCATACGTCATTCCATTTGGAGGATAAACCGAAGATAGTTGAAGAAGAGAAACTTCAGAAAGAAGAAAAAACAGATATGGAGGAGATGCCGTTGTTTTTGAAAAATTCAGAATGCCAGACGTTTGAACTTGAGATGCTGACTTGTTCGACATCGACGGAAGACGTTAGATTCGTAGGAGATGCTGAAACATCTGATGGATATTGTCAAACAGCTTTAGAGACGAAGAATTTTGAAGTTCAGACAGTCGTGAAAGATTGTAAGCAATACTAAAATTCAGAGTTTCAATTTTTCAATTTTTCAGATCTCGAAACCACAATGCAAACTGAAGATCCATCTCTGGTAACAGATGCATGCCAAACAGAGTCGATCGAAGGAACTACAGTTCATTCACAAACTGATGCTYCCAACACAAGATCGTTCATTTGTCAAACTGAGAGTGCCGTTGAGCCAGAAGTTCCTCCTGTGCCTTCAGTAGAATCTGTTCCTGTGGAATGTCAAACTGACACGTTAGATCTAGAAGAAATAGAAGTGCAAACGGAAATAGAAACATCGGTAACCGAATCGCAGACAGAAAATGCCATAGTTGATGATGTAGAAATGCAGACAGAATTAGTGAGTTTATTGTAAAACCTGTAATAGAAATTCCCAATGATTTTTAACTTTGAGCCAATTTATCTCGGTGCCTGTTACAGATAACAAACAGTGTACAACTGATAATTTTAACCATAAACGCTTCTATCACAGGCCTTATGGTATAAAACTGAAATTTAGGAAATCATACACCGTTTCAGACTGAAACAATAACTTCCGAATCCCAGACAGAAAAAGTGACTGTTGGTGATCTGGAGATGCAGACTGACCAGGTGAGTCTTTTGAGAATTTGCATCATAGTAACCGTGGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGACAGTCGTGAAAGATTGTAAG</pcr_primer_p1>
		<pcr_primer_p2>CACAGGAACAGATTCTACTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGACAGTCGTGAAAGATTGTAAGCAATACTAAAATTCAGAGTTTCAATTTTTCAATTTTTCAGATCTCGAAACCACAATGCAAACTGAAGATCCATCTCTGGTAACAGATGCATGCCAAACAGAGTCGATCGAAGGAACTACAGTTCATTCACAAACTGATGCTCCCAACACAAGATCGTTCATTTGTCAAACTGAGAGTGCCGTTGAGCCAGAAGTTCCTCCTGTGCCTTCAGTAGAATCTGTTCCTGTG</canonical_amplicon>
		<polymorphic_amplicon>AGACAGTCGTGAAAGATTGTAAGCAATACTAAAATTCAGAGTTTCAATTTTTCAATTTTTCAGATCTCGAAACCACAATGCAAACTGAAGATCCATCTCTGGTAACAGATGCATGCCAAACAGAGTCGATCGAAGGAACTACAGTTCATTCACAAACTGATGCTYCCAACACAAGATCGTTCATTTGTCAAACTGAGAGTGCCGTTGAGCCAGAAGTTCCTCCTGTGCCTTCAGTAGAATCTGTTCCTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30244</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>295122</contig_pos>
        <strand>+</strand>
        <context>GTCAAACTGA[A/G]AGTGCCGTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTCACAAACTGATGCTCCCAACACAAGATCGTTCATTTGTCAAACTGA</left_flank>
        <right_flank>AGTGCCGTTGAGCCAGAAGTTCCTCCTGTGCCTTCAGTAGAATCTGTTCC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGATAAAGACAAGAAATCAGAAAACGAAGTGTTCTTTATGACAAACGCGGGAGTACAAACTATGCATACGTCATTCCATTTGGAGGATAAACCGAAGATAGTTGAAGAAGAGAAACTTCAGAAAGAAGAAAAAACAGATATGGAGGAGATGCCGTTGTTTTTGAAAAATTCAGAATGCCAGACGTTTGAACTTGAGATGCTGACTTGTTCGACATCGACGGAAGACGTTAGATTCGTAGGAGATGCTGAAACATCTGATGGATATTGTCAAACAGCTTTAGAGACGAAGAATTTTGAAGTTCAGACAGTCGTGAAAGATTGTAAGCAATACTAAAATTCAGAGTTTCAATTTTTCAATTTTTCAGATCTCGAAACCACAATGCAAACTGAAGATCCATCTCTGGTAACAGATGCATGCCAAACAGAGTCGATCGAAGGAACTACAGTTCATTCACAAACTGATGCTCCCAACACAAGATCGTTCATTTGTCAAACTGAGAGTGCCGTTGAGCCAGAAGTTCCTCCTGTGCCTTCAGTAGAATCTGTTCCTGTGGAATGTCAAACTGACACGTTAGATCTAGAAGAAATAGAAGTGCAAACGGAAATAGAAACATCGGTAACCGAATCGCAGACAGAAAATGCCATAGTTGATGATGTAGAAATGCAGACAGAATTAGTGAGTTTATTGTAAAACCTGTAATAGAAATTCCCAATGATTTTTAACTTTGAGCCAATTTATCTCGGTGCCTGTTACAGATAACAAACAGTGTACAACTGATAATTTTAACCATAAACGCTTCTATCACAGGCCTTATGGTATAAAACTGAAATTTAGGAAATCATACACCGTTTCAGACTGAAACAATAACTTCCGAATCCCAGACAGAAAAAGTGACTGTTGGTGATCTGGAGATGCAGACTGACCAGGTGAGTCTTTTGAGAATTTGCATCATAGTAACCGTGGTTTCAGACTGAAAACACAACTTCGGAATCACAAAC</canonical>
            <polymorphic>GTGATAAAGACAAGAAATCAGAAAACGAAGTGTTCTTTATGACAAACGCGGGAGTACAAACTATGCATACGTCATTCCATTTGGAGGATAAACCGAAGATAGTTGAAGAAGAGAAACTTCAGAAAGAAGAAAAAACAGATATGGAGGAGATGCCGTTGTTTTTGAAAAATTCAGAATGCCAGACGTTTGAACTTGAGATGCTGACTTGTTCGACATCGACGGAAGACGTTAGATTCGTAGGAGATGCTGAAACATCTGATGGATATTGTCAAACAGCTTTAGAGACGAAGAATTTTGAAGTTCAGACAGTCGTGAAAGATTGTAAGCAATACTAAAATTCAGAGTTTCAATTTTTCAATTTTTCAGATCTCGAAACCACAATGCAAACTGAAGATCCATCTCTGGTAACAGATGCATGCCAAACAGAGTCGATCGAAGGAACTACAGTTCATTCACAAACTGATGCTCCCAACACAAGATCGTTCATTTGTCAAACTGARAGTGCCGTTGAGCCAGAAGTTCCTCCTGTGCCTTCAGTAGAATCTGTTCCTGTGGAATGTCAAACTGACACGTTAGATCTAGAAGAAATAGAAGTGCAAACGGAAATAGAAACATCGGTAACCGAATCGCAGACAGAAAATGCCATAGTTGATGATGTAGAAATGCAGACAGAATTAGTGAGTTTATTGTAAAACCTGTAATAGAAATTCCCAATGATTTTTAACTTTGAGCCAATTTATCTCGGTGCCTGTTACAGATAACAAACAGTGTACAACTGATAATTTTAACCATAAACGCTTCTATCACAGGCCTTATGGTATAAAACTGAAATTTAGGAAATCATACACCGTTTCAGACTGAAACAATAACTTCCGAATCCCAGACAGAAAAAGTGACTGTTGGTGATCTGGAGATGCAGACTGACCAGGTGAGTCTTTTGAGAATTTGCATCATAGTAACCGTGGTTTCAGACTGAAAACACAACTTCGGAATCACAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACAGTCGTGAAAGATTGTAAG</pcr_primer_p1>
		<pcr_primer_p2>CACAGGAACAGATTCTACTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGACAGTCGTGAAAGATTGTAAGCAATACTAAAATTCAGAGTTTCAATTTTTCAATTTTTCAGATCTCGAAACCACAATGCAAACTGAAGATCCATCTCTGGTAACAGATGCATGCCAAACAGAGTCGATCGAAGGAACTACAGTTCATTCACAAACTGATGCTCCCAACACAAGATCGTTCATTTGTCAAACTGAGAGTGCCGTTGAGCCAGAAGTTCCTCCTGTGCCTTCAGTAGAATCTGTTCCTGTG</canonical_amplicon>
		<polymorphic_amplicon>AGACAGTCGTGAAAGATTGTAAGCAATACTAAAATTCAGAGTTTCAATTTTTCAATTTTTCAGATCTCGAAACCACAATGCAAACTGAAGATCCATCTCTGGTAACAGATGCATGCCAAACAGAGTCGATCGAAGGAACTACAGTTCATTCACAAACTGATGCTCCCAACACAAGATCGTTCATTTGTCAAACTGARAGTGCCGTTGAGCCAGAAGTTCCTCCTGTGCCTTCAGTAGAATCTGTTCCTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30245</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>312978</contig_pos>
        <strand>+</strand>
        <context>GGAAATTGTC[A/T]TTTGGGTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATATGTAGAGAGCTGGACGTTCTAGTAGCGCACGATATCTGGAAATTGTC</left_flank>
        <right_flank>TTTGGGTTTTGCTTTCTTGTTCCTAAAATCTGCTATTTTTGACTCTCTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACACAAAGAAATTGCTTGCACATGCCATATTTACACCGATTCCAGCGTAAATAGCAATGAGCTTTCGGGTTGTAGCATCTTTGGCGACAAATATGGCGAATTGATTAGCAATTGTAACACTACTCCATCCGATTATAACAAGAACAACTGTCCAAAGAATAGAACGAAAAACCACTTTCATTTGGGTGGCTCCTGCATAGCTTCGAAGTTGCAGAAATGTAAAAAAATAGACGATAACTATTGCAACGTTAACAAAGATTCCACTGGTGTTGAATTGGGAAAATGTGGATCCAGCGAAAGCAAGAGGGACGGTACAGTAAATTTTTCTGAAAATGGAAGATTGGTACTTGAATTTGGAAGGATTAGAGTACGATATGGGATCTCTTTGAATGAAACCGGAAACCATGAGAAAAGACGTGTACGTTGCTGGGAGCACCAGTTGGGCGCATATGTAGAGAGCTGGACGTTCTAGTAGCGCACGATATCTGGAAATTGTCTTTTGGGTTTTGCTTTCTTGTTCCTAAAATCTGCTATTTTTGACTCTCTAATTTCCAAAACTGCCACTTACACAACGGGTGACTTGCAAGCAATAAACCTGTCTATACCAGTCATAAGTCTCAACGGATTGGCCATACACTTCCCGATACTCGTGAAAAATAACATCCAATAGCAATTAGCTTGTGTATCCGTTACTGAAAATATTCTGAGAATAAGAGCGAATCAAATTTCCGAAGGGAGTTGTACCGTCTGCAAAGATGTGGTAATTAAAAACAAAGTGTCCGCAGAGATGTAGCATGTCAGCTAAGCAGCCAAATGTGATCATGTAATGACATGGGGAATGGAAGTTTCTGAAAAATAATTGATATCAGGGATATGCACTTTGAAGCTTTCTACCGTTCTTTTATGAACAAGATTATCATTATTGAGTTTCCGATACAGCTGACAATAGCGCAGCATAAATAAAAAATAACAACTGGTACGAGAGGGATATTAGCTTC</canonical>
            <polymorphic>AAACACAAAGAAATTGCTTGCACATGCCATATTTACACCGATTCCAGCGTAAATAGCAATGAGCTTTCGGGTTGTAGCATCTTTGGCGACAAATATGGCGAATTGATTAGCAATTGTAACACTACTCCATCCGATTATAACAAGAACAACTGTCCAAAGAATAGAACGAAAAACCACTTTCATTTGGGTGGCTCCTGCATAGCTTCGAAGTTGCAGAAATGTAAAAAAATAGACGATAACTATTGCAACGTTAACAAAGATTCCACTGGTGTTGAATTGGGAAAATGTGGATCCAGCGAAAGCAAGAGGGACGGTACAGTAAATTTTTCTGAAAATGGAAGATTGGTACTTGAATTTGGAAGGATTAGAGTACGATATGGGATCTCTTTGAATGAAACCGGAAACCATGAGAAAAGACGTGTACGTTGCTGGGAGCACCAGTTGGGCGCATATGTAGAGAGCTGGACGTTCTAGTAGCGCACGATATCTGGAAATTGTCWTTTGGGTTTTGCTTTCTTGTTCCTAAAATCTGCTATTTTTGACTCTCTAATTTCCAAAACTGCCACTTACACAACGGGTGACTTGCAAGCAATAAACCTGTCTATACCAGTCATAAGTCTCAACGGATTGGCCATACACTTCCCGATACTCGTGAAAAATAACATCCAATAGCAATTAGCTTGTGTATCCGTTACTGAAAATATTCTGAGAATAAGAGCGAATCAAATTTCCGAAGGGAGTTGTACCGTCTGCAAAGATGTGGTAATTAAAAACAAAGTGTCCGCAGAGATGTAGCATGTCAGCTAAGCAGCCAAATGTGATCATGTAATGACATGGGGAATGGAAGTTTCTGAAAAATAATTGATATCAGGGATATGCACTTTGAAGCTTTCTACCGTTCTTTTATGAACAAGATTATCATTATTGAGTTTCCGATACAGCTGACAATAGCGCAGCATAAATAAAAAATAACAACTGGTACGAGAGGGATATTAGCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGTACGATATGGGATCTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TGACTGGTATAGACAGGTTTATTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGAGTACGATATGGGATCTCTTTGAATGAAACCGGAAACCATGAGAAAAGACGTGTACGTTGCTGGGAGCACCAGTTGGGCGCATATGTAGAGAGCTGGACGTTCTAGTAGCGCACGATATCTGGAAATTGTCTTTTGGGTTTTGCTTTCTTGTTCCTAAAATCTGCTATTTTTGACTCTCTAATTTCCAAAACTGCCACTTACACAACGGGTGACTTGCAAGCAATAAACCTGTCTATACCAGTCA</canonical_amplicon>
		<polymorphic_amplicon>AGAGTACGATATGGGATCTCTTTGAATGAAACCGGAAACCATGAGAAAAGACGTGTACGTTGCTGGGAGCACCAGTTGGGCGCATATGTAGAGAGCTGGACGTTCTAGTAGCGCACGATATCTGGAAATTGTCWTTTGGGTTTTGCTTTCTTGTTCCTAAAATCTGCTATTTTTGACTCTCTAATTTCCAAAACTGCCACTTACACAACGGGTGACTTGCAAGCAATAAACCTGTCTATACCAGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30246</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>354428</contig_pos>
        <strand>+</strand>
        <context>TCAGAATCTC[C/G]TTCTCCTCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTCGTGATGCGCATAATAAGCTCCTTTTACACTTATTTTTTCAGAATCTC</left_flank>
        <right_flank>TTCTCCTCTCACTGACCATCCATTCCATATACGTCTTGTACACTGTACCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCGCGCCTTCTCGCGCCTCACGCTTTTCCCTTCTTCTTCTTCTTCACGTCTTCTTCTTCTTATTCTCAACCATTACGGCGATGGCGCATCTGCGACCCGACTTTTTCTCGCTTCTACTTTTTCTTTTTTCGAGTTTTTCTTCTTTGCGAAATTCGAGCCCATTGGTGGTGTGCTTTCTCCTTCCAATCGGGTGCTCTCTGAGCCGTTGGTAGCCTGCCCCAAATTGAGTTACACTTTTCTGGTCTTCTCTTCGTCATACATCCATCTCCGTGCCCAGAATAAGCAGCCACACTCTTTTTTGGTAGAGTAAGACCCCAGAAAAAAAAACGTTTGTTTATGTTGACCGAACCCTCTTTGACTTATATACTATGAAGGAACCTTCACCATTTTTTTCCGTGAGAGCAAAAGAAAATCGAAGCTAAGTAGTTCAACTTACAACTTGTTATTGCTCGTGATGCGCATAATAAGCTCCTTTTACACTTATTTTTTCAGAATCTCCTTCTCCTCTCACTGACCATCCATTCCATATACGTCTTGTACACTGTACCATAATTCATTCTTCTTCTTTTATCTGGTGTTTCTTTCAAATGTGATTTTTTGTATTCATATGGGTTTTGTATTCTTTGTCATGTATAAAACTTTTTTTGAAACTTTAATCTTGCGACGTTCTATTTGTATGGTATCCGGATCCATCGTCTCTATCTTCTCCTTTCTAACCGTCTCTTCTCATAAATGTTCTTTTACAGATTCAAAAGTTTCATGGATGAAACCCATAGTTTGTTACTGAACGAGGAAGCTCTTGAGGCTTGTCCTGAGCAGAAGCGTCCAGTTTTCATATACGAATGGCTTCGATACTTAGATCGGATACTTCCCATCACACAGAGGGAAGACCTCAAAAATGTGCAGAAGGAGTTACAGAGACAGTTAGAAGATCGACTGTATACTGTAGTGGGTCCACCGACGAGGAAACTGCTGACACGATGTATAGCACGGGTTTAC</canonical>
            <polymorphic>GTCGCGCCTTCTCGCGCCTCACGCTTTTCCCTTCTTCTTCTTCTTCACGTCTTCTTCTTCTTATTCTCAACCATTACGGCGATGGCGCATCTGCGACCCGACTTTTTCTCGCTTCTACTTTTTCTTTTTTCGAGTTTTTCTTCTTTGCGAAATTCGAGCCCATTGGTGGTGTGCTTTCTCCTTCCAATCGGGTGCTCTCTGAGCCGTTGGTAGCCTGCCCCAAATTGAGTTACACTTTTCTGGTCTTCTCTTCGTCATACATCCATCTCCGTGCCCAGAATAAGCAGCCACACTCTTTTTTGGTAGAGTAAGACCCCAGAAAAAAAAACGTTTGTTTATGTTGACCGAACCCTCTTTGACTTATATACTATGAAGGAACCTTCACCATTTTTTTCCGTGAGAGCAAAAGAAAATCGAAGCTAAGTAGTTCAACTTACAACTTGTTATTGCTCGTGATGCGCATAATAAGCTCCTTTTACACTTATTTTTTCAGAATCTCSTTCTCCTCTCACTGACCATCCATTCCATATACGTCTTGTACACTGTACCATAATTCATTCTTCTTCTTTTATCTGGTGTTTCTTTCAAATGTGATTTTTTGTATTCATATGGGTTTTGTATTCTTTGTCATGTATAAAACTTTTTTTGAAACTTTAATCTTGCGACGTTCTATTTGTATGGTATCCGGATCCATCGTCTCTATCTTCTCCTTTCTAACCGTCTCTTCTCATAAATGTTCTTTTACAGATTCAAAAGTTTCATGGATGAAACCCATAGTTTGTTACTGAACGAGGAAGCTCTTGAGGCTTGTCCTGAGCAGAAGCGTCCAGTTTTCATATACGAATGGCTTCGATACTTAGATCGGATACTTCCCATCACACAGAGGGAAGACCTCAAAAATGTGCAGAAGGAGTTACAGAGACAGTTAGAAGATCGACTGTATACTGTAGTGGGTCCACCGACGAGGAAACTGCTGACACGATGTATAGCACGGGTTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAACCCTCTTTGACTTATATACT</pcr_primer_p1>
		<pcr_primer_p2>ACATTTGAAAGAAACACCAGATA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CGAACCCTCTTTGACTTATATACTATGAAGGAACCTTCACCATTTTTTTCCGTGAGAGCAAAAGAAAATCGAAGCTAAGTAGTTCAACTTACAACTTGTTATTGCTCGTGATGCGCATAATAAGCTCCTTTTACACTTATTTTTTCAGAATCTCCTTCTCCTCTCACTGACCATCCATTCCATATACGTCTTGTACACTGTACCATAATTCATTCTTCTTCTTTTATCTGGTGTTTCTTTCAAATGT</canonical_amplicon>
		<polymorphic_amplicon>CGAACCCTCTTTGACTTATATACTATGAAGGAACCTTCACCATTTTTTTCCGTGAGAGCAAAAGAAAATCGAAGCTAAGTAGTTCAACTTACAACTTGTTATTGCTCGTGATGCGCATAATAAGCTCCTTTTACACTTATTTTTTCAGAATCTCSTTCTCCTCTCACTGACCATCCATTCCATATACGTCTTGTACACTGTACCATAATTCATTCTTCTTCTTTTATCTGGTGTTTCTTTCAAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30247</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>461480</contig_pos>
        <strand></strand>
        <context>gaggggttac[G/A]CTATTTTTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATTGAGCTGAAAGTGTACTTATATAGTGGGCTTCTATTAGAGGGGTTAC</left_flank>
        <right_flank>CTATTTTTGTATAGCTCATCGCCTATTCGAAACAATATGGAAGTAAAACC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTGTAGCTTATGAAGTGTTCAGAAGATCAGTTCAAAACCGAAATGGATGAACTGGTGAACTTATGTTCGGTTGGGTTGAATCATTTTACAGACAAAGCAGACTAGATAGATGCTAGATGTCCGCTGAAAAGGTGCGGGGTGAACCGTCTAGTCGCCAAGGTGGCAATGCTGCCGGGCCATTAGCGGCTGGTCGACGGACTTTTGAACGAGAATCTCCTAGACATGTGCTCACTAATTTCGAAAAAATCGGTTTAGAAGTTTTGTTAAATTTGAGTTTGCAGTGTTTCAAGTGTTTGAAAAATCCATTCTAAACGTTCGCTTTAAATGCAATTATTTCGGTTCCTATAAGAGATATCAAAATTTTGTCAACAAATCAAATGTTGAAAATAACATGATAAACAATTTATCAGTGGACATCTTTCTGAAATCTTTGACAGGTGCCAAGATAATTGAGCTGAAAGTGTACTTATATAGTGGGCTTCTATTAGAGGGGTTACGCTATTTTTGTATAGCTCATCGCCTATTCGAAACAATATGGAAGTAAAACCGAAAATGACTGAGACAAAAGGAAAATGAATATAATGAGAATGACACCCATTTTGACTGGAATGGTCAGTTTGAGCCATTTGAGTGTCAATCAGTCCGTCTACCTTCATGATGCAAAACCAGAATAGTCTCCTTCTAACCAACCTCCTTTCAGAAAATATTTTTTCACATTCTCACTGTTACTCTAAATTTCAAAAATGACATCCTAGAAACTTACAGCAACAAGTAGGAGTAATAATAGAGCTGGCCTCCTGACGGCCATCTTTCGGTGTGAAATGAGAGACCAATAGCGAGGTGCTCGCTTGTGTATCACTTATCAATTCCCCTTTGTTATCAGTCACACAAATTTCGGACTGTTTTCAATATACAAACAAGAGTTTGTGTCAAACAAGGTTTATCAACGGAAACTGGACAGAGAAATATAATTAAATGAGATGCGTGGAAATGGAGAG</canonical>
            <polymorphic>GTTTGTAGCTTATGAAGTGTTCAGAAGATCAGTTCAAAACCGAAATGGATGAACTGGTGAACTTATGTTCGGTTGGGTTGAATCATTTTACAGACAAAGCAGACTAGATAGATGCTAGATGTCCGCTGAAAAGGTGCGGGGTGAACCGTCTAGTCGCCAAGGTGGCAATGCTGCCGGGCCATTAGCGGCTGGTCGACGGACTTTTGAACGAGAATCTCCTAGACATGTGCTCACTAATTTCGAAAAAATCGGTTTAGAAGTTTTGTTAAATTTGAGTTTGCAGTGTTTCAAGTGTTTGAAAAATCCATTCTAAACGTTCGCTTTAAATGCAATTATTTCGGTTCCTATAAGAGATATCAAAATTTTGTCAACAAATCAAATGTTGAAAATAACATGATAAACAATTTATCAGTGGACATCTTTCTGAAATCTTTGACAGGTGCCAAGATAATTGAGCTGAAAGTGTACTTATATAGTGGGCTTCTATTAGAGGGGTTACRCTATTTTTGTATAGCTCATCGCCTATTCGAAACAATATGGAAGTAAAACCGAAAATGACTGAGACAAAAGGAAAATGAATATAATGAGAATGACACCCATTTTGACTGGAATGGTCAGTTTGAGCCATTTGAGTGTCAATCAGTCCGTCTACCTTCATGATGCAAAACCAGAATAGTCTCCTTCTAACCAACCTCCTTTCAGAAAATATTTTTTCACATTCTCACTGTTACTCTAAATTTCAAAAATGACATCCTAGAAACTTACAGCAACAAGTAGGAGTAATAATAGAGCTGGCCTCCTGACGGCCATCTTTCGGTGTGAAATGAGAGACCAATAGCGAGGTGCTCGCTTGTGTATCACTTATCAATTCCCCTTTGTTATCAGTCACACAAATTTCGGACTGTTTTCAATATACAAACAAGAGTTTGTGTCAAACAAGGTTTATCAACGGAAACTGGACAGAGAAATATAATTAAATGAGATGCGTGGAAATGGAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTTTGAAAAATCCATTCTAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCGGTTTTACTTCCATATTGT</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>GTGTTTGAAAAATCCATTCTAAACGTTCGCTTTAAATGCAATTATTTCGGTTCCTATAAGAGATATCAAAATTTTGTCAACAAATCAAATGTTGAAAATAACATGATAAACAATTTATCAGTGGACATCTTTCTGAAATCTTTGACAGGTGCCAAGATAATTGAGCTGAAAGTGTACTTATATAGTGGGCTTCTATTAGAGGGGTTACGCTATTTTTGTATAGCTCATCGCCTATTCGAAACAATATGGAAGTAAAACCGAA</canonical_amplicon>
		<polymorphic_amplicon>GTGTTTGAAAAATCCATTCTAAACGTTCGCTTTAAATGCAATTATTTCGGTTCCTATAAGAGATATCAAAATTTTGTCAACAAATCAAATGTTGAAAATAACATGATAAACAATTTATCAGTGGACATCTTTCTGAAATCTTTGACAGGTGCCAAGATAATTGAGCTGAAAGTGTACTTATATAGTGGGCTTCTATTAGAGGGGTTACRCTATTTTTGTATAGCTCATCGCCTATTCGAAACAATATGGAAGTAAAACCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30248</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>529995</contig_pos>
        <strand>+</strand>
        <context>TCTGAATTAR[A/G]AAAAACTAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGAACGTTTAGCACTGTATCTCTCCCAGAGACATTGTATCTGAATTAG</left_flank>
        <right_flank>AAAAACTAGATTTGAAAACCGTCCCGATGTGATGAACCTGTATCCGTAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTGTTCTCGTAGTTGGCACTGGATTCTTCCATGGACTCATCATACTTCCAATCATCATCAGGTCCTTCGCTACTAACGCAAAAGCCCATGTCCCCACACATCCTCATTGATTTTTAGATTTTTGGTTTTTTTTTTCAGAATGCGGGTTTCTAGAGAATCAAATGAATTTGTTTTATTAGAAAAGAACACTCATATTATCCTAACAAATCTCATGACATTGATTAGCTCGCAACACGAGAATTGCAGCAATCGTCTCATTTTTTCGCTGAATTCGTCCGGATAAACCATCTTTAGGGCGATACATTGGGTTCACCGAGTCTAATCCAAAGTAGAAAGAATACAAGTTTTGCCCTCGTAAAAATGGTCTGATAATGTTACAAAACTCTTCTCCCTCCGTAGTTCGGTAACTTTCGCTGATGCAATCAGAAGATCCTTGAATTGAGCAATAATGAACGTTTAGCACTGTATCTCTCCCAGAGACATTGTATCTGAATTAGAAAAAACTAGATTTGAAAACCGTCCCGATGTGATGAACCTGTATCCGTAACAAGAAGTGTAGTCCATCCACTGGGGTTCGGATTTGAAATAGGTTTGATTTAATCCATTCAAATTAATGTGTCTGAGCATTGGAGTTTTGTCTTTTGGCTTTGATCCGGAGTCTGAAACAATTTATGGAACTTTGAAAACAGCTGATGCGCACATCCAACTGGAAGTTTTACTTTTGCCTTTTTTTTTGAAGGTGGAGCTGCACGAGGGAATCGTTTTTCACATCTTAAATCAGGAAATCTTGAATAAAAAAACTGCAATATTCCGATTACTCACTTTGTTTGACATTCTTCTTTTGTTAAAAAATTATTTCCGCTTTTTCCACACCCCGTATAATGAAATCCTTTGCATTGTCGAGCTCTCTTATTGAAGTAGTATCGATTCGACATTGCTTCACACCAACTTCCTCTGTCCAGTGATTCCATACACGGATCTGTTCCAGTCACTTCACA</canonical>
            <polymorphic>CAGTGTTCTCGTAGTTGGCACTGGATTCTTCCATGGACTCATCATACTTCCAATCATCATCAGGTCCTTCGCTACTAACGCAAAAGCCCATGTCCCCACACATCCTCATTGATTTTTAGATTTTTGGTTTTTTTTTTCAGAATGCGGGTTTCTAGAGAATCAAATGAATTTGTTTTATTAGAAAAGAACACTCATATTATCCTAACAAATCTCATGACATTGATTAGCTCGCAACACGAGAATTGCAGCAATCGTCTCATTTTTTCGCTGAATTCGTCCGGATAAACCATCTTTAGGGCGATACATTGGGTTCACCGAGTCTAATCCAAAGTAGAAAGAATACAAGTTTTGCCCTCGTAAAAATGGTCTGATAATGTTACAAAACTCTTCTCCCTCCGTAGTTCGGTAACTTTCGCTGATGCAATCAGAAGATCCTTGAATTGAGCAATAATGAACGTTTAGCACTGTATCTCTCCCAGAGACATTGTATCTGAATTAGRAAAAACTAGATTTGAAAACCGTCCCGATGTGATGAACCTGTATCCGTAACAAGAAGTGTAGTCCATCCACTGGGGTTCGGATTTGAAATAGGTTTGATTTAATCCATTCAAATTAATGTGTCTGAGCATTGGAGTTTTGTCTTTTGGCTTTGATCCGGAGTCTGAAACAATTTATGGAACTTTGAAAACAGCTGATGCGCACATCCAACTGGAAGTTTTACTTTTGCCTTTTTTTTTGAAGGTGGAGCTGCACGAGGGAATCGTTTTTCACATCTTAAATCAGGAAATCTTGAATAAAAAAACTGCAATATTCCGATTACTCACTTTGTTTGACATTCTTCTTTTGTTAAAAAATTATTTCCGCTTTTTCCACACCCCGTATAATGAAATCCTTTGCATTGTCGAGCTCTCTTATTGAAGTAGTATCGATTCGACATTGCTTCACACCAACTTCCTCTGTCCAGTGATTCCATACACGGATCTGTTCCAGTCACTTCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCCTTGAATTGAGCAATAAT</pcr_primer_p1>
		<pcr_primer_p2>GTTCCATAAATTGTTTCAGACTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCCTTGAATTGAGCAATAATGAACGTTTAGCACTGTATCTCTCCCAGAGACATTGTATCTGAATTAGAAAAAACTAGATTTGAAAACCGTCCCGATGTGATGAACCTGTATCCGTAACAAGAAGTGTAGTCCATCCACTGGGGTTCGGATTTGAAATAGGTTTGATTTAATCCATTCAAATTAATGTGTCTGAGCATTGGAGTTTTGTCTTTTGGCTTTGATCCGGAGTCTGAAACAATTTATGGAAC</canonical_amplicon>
		<polymorphic_amplicon>GATCCTTGAATTGAGCAATAATGAACGTTTAGCACTGTATCTCTCCCAGAGACATTGTATCTGAATTAGRAAAAACTAGATTTGAAAACCGTCCCGATGTGATGAACCTGTATCCGTAACAAGAAGTGTAGTCCATCCACTGGGGTTCGGATTTGAAATAGGTTTGATTTAATCCATTCAAATTAATGTGTCTGAGCATTGGAGTTTTGTCTTTTGGCTTTGATCCGGAGTCTGAAACAATTTATGGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30249</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>530329</contig_pos>
        <strand>+</strand>
        <context>CTTTGTTTGA[A/C]ATTCTTCTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAATCTTGAATAAAAAAACTGCAATATTCCGATTACTCACTTTGTTTGA</left_flank>
        <right_flank>ATTCTTCTTTTGTTAAAAAATTATTTCCGCTTTTTCCACACCCCGTATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGAATACAAGTTTTGCCCTCGTAAAAATGGTCTGATAATGTTACAAAACTCTTCTCCCTCCGTAGTTCGGTAACTTTCGCTGATGCAATCAGAAGATCCTTGAATTGAGCAATAATGAACGTTTAGCACTGTATCTCTCCCAGAGACATTGTATCTGAATTAGAAAAAACTAGATTTGAAAACCGTCCCGATGTGATGAACCTGTATCCGTAACAAGAAGTGTAGTCCATCCACTGGGGTTCGGATTTGAAATAGGTTTGATTTAATCCATTCAAATTAATGTGTCTGAGCATTGGAGTTTTGTCTTTTGGCTTTGATCCGGAGTCTGAAACAATTTATGGAACTTTGAAAACAGCTGATGCGCACATCCAACTGGAAGTTTTACTTTTGCCTTTTTTTTTGAAGGTGGAGCTGCACGAGGGAATCGTTTTTCACATCTTAAATCAGGAAATCTTGAATAAAAAAACTGCAATATTCCGATTACTCACTTTGTTTGACATTCTTCTTTTGTTAAAAAATTATTTCCGCTTTTTCCACACCCCGTATAATGAAATCCTTTGCATTGTCGAGCTCTCTTATTGAAGTAGTATCGATTCGACATTGCTTCACACCAACTTCCTCTGTCCAGTGATTCCATACACGGATCTGTTCCAGTCACTTCACACGCCTTCTGGCAAATTTCAAAAGTTTCAAATCTATTTGGGTTTCCTCCACATCCTCCATACAAAAATTGATCGCAAGTACCACGGGTTAAGTTGTAGAACCAGACATAACGCAATTGATTACAAGATCCCCAATCGGGTGGGAAGGAACAGATACCTGAAGTTCAACATTCTTCTGTACTTCTTTGATGGAAACACTCACGTGGATCATTACTATTCAATAGTCCCTTGCAAGTCTGTTCACAAGAGTTTTGAGTCGCAAATCGATTTCTATTCCCTCCGCATCCAGAATAAGTGAATGAAGTACACTTCTGAGCTCCGTATGTCCATCTCTGC</canonical>
            <polymorphic>AAAGAATACAAGTTTTGCCCTCGTAAAAATGGTCTGATAATGTTACAAAACTCTTCTCCCTCCGTAGTTCGGTAACTTTCGCTGATGCAATCAGAAGATCCTTGAATTGAGCAATAATGAACGTTTAGCACTGTATCTCTCCCAGAGACATTGTATCTGAATTAGAAAAAACTAGATTTGAAAACCGTCCCGATGTGATGAACCTGTATCCGTAACAAGAAGTGTAGTCCATCCACTGGGGTTCGGATTTGAAATAGGTTTGATTTAATCCATTCAAATTAATGTGTCTGAGCATTGGAGTTTTGTCTTTTGGCTTTGATCCGGAGTCTGAAACAATTTATGGAACTTTGAAAACAGCTGATGCGCACATCCAACTGGAAGTTTTACTTTTGCCTTTTTTTTTGAAGGTGGAGCTGCACGAGGGAATCGTTTTTCACATCTTAAATCAGGAAATCTTGAATAAAAAAACTGCAATATTCCGATTACTCACTTTGTTTGAMATTCTTCTTTTGTTAAAAAATTATTTCCGCTTTTTCCACACCCCGTATAATGAAATCCTTTGCATTGTCGAGCTCTCTTATTGAAGTAGTATCGATTCGACATTGCTTCACACCAACTTCCTCTGTCCAGTGATTCCATACACGGATCTGTTCCAGTCACTTCACACGCCTTCTGGCAAATTTCAAAAGTTTCAAATCTATTTGGGTTTCCTCCACATCCTCCATACAAAAATTGATCGCAAGTACCACGGGTTAAGTTGTAGAACCAGACATAACGCAATTGATTACAAGATCCCCAATCGGGTGGGAAGGAACAGATACCTGAAGTTCAACATTCTTCTGTACTTCTTTGATGGAAACACTCACGTGGATCATTACTATTCAATAGTCCCTTGCAAGTCTGTTCACAAGAGTTTTGAGTCGCAAATCGATTTCTATTCCCTCCGCATCCAGAATAAGTGAATGAAGTACACTTCTGAGCTCCGTATGTCCATCTCTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTCTGAAACAATTTATGGAAC</pcr_primer_p1>
		<pcr_primer_p2>CAATGCAAAGGATTTCATTATAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GAGTCTGAAACAATTTATGGAACTTTGAAAACAGCTGATGCGCACATCCAACTGGAAGTTTTACTTTTGCCTTTTTTTTTGAAGGTGGAGCTGCACGAGGGAATCGTTTTTCACATCTTAAATCAGGAAATCTTGAATAAAAAAACTGCAATATTCCGATTACTCACTTTGTTTGACATTCTTCTTTTGTTAAAAAATTATTTCCGCTTTTTCCACACCCCGTATAATGAAATCCTTTGCATTG</canonical_amplicon>
		<polymorphic_amplicon>GAGTCTGAAACAATTTATGGAACTTTGAAAACAGCTGATGCGCACATCCAACTGGAAGTTTTACTTTTGCCTTTTTTTTTGAAGGTGGAGCTGCACGAGGGAATCGTTTTTCACATCTTAAATCAGGAAATCTTGAATAAAAAAACTGCAATATTCCGATTACTCACTTTGTTTGAMATTCTTCTTTTGTTAAAAAATTATTTCCGCTTTTTCCACACCCCGTATAATGAAATCCTTTGCATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30250</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>530343</contig_pos>
        <strand>+</strand>
        <context>CTTCTTTTGT[C/T]AAAAAATTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAACTGCAATATTCCGATTACTCACTTTGTTTGACATTCTTCTTTTGT</left_flank>
        <right_flank>AAAAAATTATTTCCGCTTTTTCCACACCCCGTATAATGAAATCCTTTGCA</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCCCTCGTAAAAATGGTCTGATAATGTTACAAAACTCTTCTCCCTCCGTAGTTCGGTAACTTTCGCTGATGCAATCAGAAGATCCTTGAATTGAGCAATAATGAACGTTTAGCACTGTATCTCTCCCAGAGACATTGTATCTGAATTAGAAAAAACTAGATTTGAAAACCGTCCCGATGTGATGAACCTGTATCCGTAACAAGAAGTGTAGTCCATCCACTGGGGTTCGGATTTGAAATAGGTTTGATTTAATCCATTCAAATTAATGTGTCTGAGCATTGGAGTTTTGTCTTTTGGCTTTGATCCGGAGTCTGAAACAATTTATGGAACTTTGAAAACAGCTGATGCGCACATCCAACTGGAAGTTTTACTTTTGCCTTTTTTTTTGAAGGTGGAGCTGCACGAGGGAATCGTTTTTCACATCTTAAATCAGGAAATCTTGAATAAAAAAACTGCAATATTCCGATTACTCACTTTGTTTGACATTCTTCTTTTGTTAAAAAATTATTTCCGCTTTTTCCACACCCCGTATAATGAAATCCTTTGCATTGTCGAGCTCTCTTATTGAAGTAGTATCGATTCGACATTGCTTCACACCAACTTCCTCTGTCCAGTGATTCCATACACGGATCTGTTCCAGTCACTTCACACGCCTTCTGGCAAATTTCAAAAGTTTCAAATCTATTTGGGTTTCCTCCACATCCTCCATACAAAAATTGATCGCAAGTACCACGGGTTAAGTTGTAGAACCAGACATAACGCAATTGATTACAAGATCCCCAATCGGGTGGGAAGGAACAGATACCTGAAGTTCAACATTCTTCTGTACTTCTTTGATGGAAACACTCACGTGGATCATTACTATTCAATAGTCCCTTGCAAGTCTGTTCACAAGAGTTTTGAGTCGCAAATCGATTTCTATTCCCTCCGCATCCAGAATAAGTGAATGAAGTACACTTCTGAGCTCCGTATGTCCATCTCTGCAGCGGATAGGAACT</canonical>
            <polymorphic>TTGCCCTCGTAAAAATGGTCTGATAATGTTACAAAACTCTTCTCCCTCCGTAGTTCGGTAACTTTCGCTGATGCAATCAGAAGATCCTTGAATTGAGCAATAATGAACGTTTAGCACTGTATCTCTCCCAGAGACATTGTATCTGAATTAGAAAAAACTAGATTTGAAAACCGTCCCGATGTGATGAACCTGTATCCGTAACAAGAAGTGTAGTCCATCCACTGGGGTTCGGATTTGAAATAGGTTTGATTTAATCCATTCAAATTAATGTGTCTGAGCATTGGAGTTTTGTCTTTTGGCTTTGATCCGGAGTCTGAAACAATTTATGGAACTTTGAAAACAGCTGATGCGCACATCCAACTGGAAGTTTTACTTTTGCCTTTTTTTTTGAAGGTGGAGCTGCACGAGGGAATCGTTTTTCACATCTTAAATCAGGAAATCTTGAATAAAAAAACTGCAATATTCCGATTACTCACTTTGTTTGACATTCTTCTTTTGTYAAAAAATTATTTCCGCTTTTTCCACACCCCGTATAATGAAATCCTTTGCATTGTCGAGCTCTCTTATTGAAGTAGTATCGATTCGACATTGCTTCACACCAACTTCCTCTGTCCAGTGATTCCATACACGGATCTGTTCCAGTCACTTCACACGCCTTCTGGCAAATTTCAAAAGTTTCAAATCTATTTGGGTTTCCTCCACATCCTCCATACAAAAATTGATCGCAAGTACCACGGGTTAAGTTGTAGAACCAGACATAACGCAATTGATTACAAGATCCCCAATCGGGTGGGAAGGAACAGATACCTGAAGTTCAACATTCTTCTGTACTTCTTTGATGGAAACACTCACGTGGATCATTACTATTCAATAGTCCCTTGCAAGTCTGTTCACAAGAGTTTTGAGTCGCAAATCGATTTCTATTCCCTCCGCATCCAGAATAAGTGAATGAAGTACACTTCTGAGCTCCGTATGTCCATCTCTGCAGCGGATAGGAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>261 251 240 162 72 14</canonical_bands>
                <polymorphic_bands>312 261 251 162 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATTTATGGAACTTTGAAAACA</pcr_primer_p1>
		<pcr_primer_p2>CAATAAGAGAGCTCGACAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAATTTATGGAACTTTGAAAACAGCTGATGCGCACATCCAACTGGAAGTTTTACTTTTGCCTTTTTTTTTGAAGGTGGAGCTGCACGAGGGAATCGTTTTTCACATCTTAAATCAGGAAATCTTGAATAAAAAAACTGCAATATTCCGATTACTCACTTTGTTTGACATTCTTCTTTTGTTAAAAAATTATTTCCGCTTTTTCCACACCCCGTATAATGAAATCCTTTGCATTGTCGAGCTCTCTTATTG</canonical_amplicon>
		<polymorphic_amplicon>CAATTTATGGAACTTTGAAAACAGCTGATGCGCACATCCAACTGGAAGTTTTACTTTTGCCTTTTTTTTTGAAGGTGGAGCTGCACGAGGGAATCGTTTTTCACATCTTAAATCAGGAAATCTTGAATAAAAAAACTGCAATATTCCGATTACTCACTTTGTTTGACATTCTTCTTTTGTYAAAAAATTATTTCCGCTTTTTCCACACCCCGTATAATGAAATCCTTTGCATTGTCGAGCTCTCTTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30251</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>531103</contig_pos>
        <strand>+</strand>
        <context>CAAAAGCGGA[A/C]AAAAAACACA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACTGAAATGACAGACATACGAAAATCAGAAAAAGTAAGACAAAAGCGGA</left_flank>
        <right_flank>AAAAAACACACACACAACCGGGAAATTTTCTAAGATCAGATGGCAATAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGCAATTGATTACAAGATCCCCAATCGGGTGGGAAGGAACAGATACCTGAAGTTCAACATTCTTCTGTACTTCTTTGATGGAAACACTCACGTGGATCATTACTATTCAATAGTCCCTTGCAAGTCTGTTCACAAGAGTTTTGAGTCGCAAATCGATTTCTATTCCCTCCGCATCCAGAATAAGTGAATGAAGTACACTTCTGAGCTCCGTATGTCCATCTCTGCAGCGGATAGGAACTCGAATTCTTTCCGCAGATTCCCTTGTCTCCCGGTGCTTCGAAGCACACTGTAATATTGGATTGACTATTTTCTATGTTTTTTCCCTTGTCTGATTTTCTGTTTTCTTGTATTGTCATATCACTTCAATCAGTCCATCAGAGAAACCATTTATTATAAAAGGGGTTGGACATAAAATACTTTCGTTAGTAGAAGCTCAATACGTGGATCAAACTGAAATGACAGACATACGAAAATCAGAAAAAGTAAGACAAAAGCGGACAAAAAACACACACACAACCGGGAAATTTTCTAAGATCAGATGGCAATAGAGATTCAAAAAGAAATGAGAAGAAAACGAATCAATTAAAGTTGTTGCACTCTAGCACGGATCTTTCGAATTCCAAACTTTGGCCTACCCTCGCTGCTTGCTCGAGTTTTCCGTTCCAATTCTCTGGGCTGATTGGATCGAGAACAAGTTCGCTGACAAATTTCGTACGAGTAGAAGTTATTCGCATTACCTCCACATCCCAGATACCACATTTGAGAACATTTTCCTGGAAAACAAAGCTTCGAATCATACCAGATTCAGTGATATTTTACCATAACTCCGATCGTAATAAAATCTGAATCCAGCTTGTGGCAAACAACTATCTTCGTTCTTTCCATATCCAATGTGCATGGGTAAGTGGCAATCTACTTCTGCTTCATTCATTGAATTGAATGCGAAACACAAGTTTTCACATTGAGATACCGTCATGAATCGGTTGGAATTTCCTCCAC</canonical>
            <polymorphic>ACGCAATTGATTACAAGATCCCCAATCGGGTGGGAAGGAACAGATACCTGAAGTTCAACATTCTTCTGTACTTCTTTGATGGAAACACTCACGTGGATCATTACTATTCAATAGTCCCTTGCAAGTCTGTTCACAAGAGTTTTGAGTCGCAAATCGATTTCTATTCCCTCCGCATCCAGAATAAGTGAATGAAGTACACTTCTGAGCTCCGTATGTCCATCTCTGCAGCGGATAGGAACTCGAATTCTTTCCGCAGATTCCCTTGTCTCCCGGTGCTTCGAAGCACACTGTAATATTGGATTGACTATTTTCTATGTTTTTTCCCTTGTCTGATTTTCTGTTTTCTTGTATTGTCATATCACTTCAATCAGTCCATCAGAGAAACCATTTATTATAAAAGGGGTTGGACATAAAATACTTTCGTTAGTAGAAGCTCAATACGTGGATCAAACTGAAATGACAGACATACGAAAATCAGAAAAAGTAAGACAAAAGCGGAMAAAAAACACACACACAACCGGGAAATTTTCTAAGATCAGATGGCAATAGAGATTCAAAAAGAAATGAGAAGAAAACGAATCAATTAAAGTTGTTGCACTCTAGCACGGATCTTTCGAATTCCAAACTTTGGCCTACCCTCGCTGCTTGCTCGAGTTTTCCGTTCCAATTCTCTGGGCTGATTGGATCGAGAACAAGTTCGCTGACAAATTTCGTACGAGTAGAAGTTATTCGCATTACCTCCACATCCCAGATACCACATTTGAGAACATTTTCCTGGAAAACAAAGCTTCGAATCATACCAGATTCAGTGATATTTTACCATAACTCCGATCGTAATAAAATCTGAATCCAGCTTGTGGCAAACAACTATCTTCGTTCTTTCCATATCCAATGTGCATGGGTAAGTGGCAATCTACTTCTGCTTCATTCATTGAATTGAATGCGAAACACAAGTTTTCACATTGAGATACCGTCATGAATCGGTTGGAATTTCCTCCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATCACTTCAATCAGTCCATCA</pcr_primer_p1>
		<pcr_primer_p2>TGCTAGAGTGCAACAACTTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATCACTTCAATCAGTCCATCAGAGAAACCATTTATTATAAAAGGGGTTGGACATAAAATACTTTCGTTAGTAGAAGCTCAATACGTGGATCAAACTGAAATGACAGACATACGAAAATCAGAAAAAGTAAGACAAAAGCGGACAAAAAACACACACACAACCGGGAAATTTTCTAAGATCAGATGGCAATAGAGATTCAAAAAGAAATGAGAAGAAAACGAATCAATTAAAGTTGTTGCACTCTAGCA</canonical_amplicon>
		<polymorphic_amplicon>ATATCACTTCAATCAGTCCATCAGAGAAACCATTTATTATAAAAGGGGTTGGACATAAAATACTTTCGTTAGTAGAAGCTCAATACGTGGATCAAACTGAAATGACAGACATACGAAAATCAGAAAAAGTAAGACAAAAGCGGAMAAAAAACACACACACAACCGGGAAATTTTCTAAGATCAGATGGCAATAGAGATTCAAAAAGAAATGAGAAGAAAACGAATCAATTAAAGTTGTTGCACTCTAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30252</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>533493</contig_pos>
        <strand>+</strand>
        <context>CAAGAATCTC[C/T]TAAACAATCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAAGCTTTGGCTTTTGCATCGTAGTAACTTCTCACAACCCAAGAATCTC</left_flank>
        <right_flank>TAAACAATCTTCATCCCACTTCGGATCATATTCGTCGTCACATGGATCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGTGTGCCTTTATTTTCAGAATGATTGGACTTGATAATTTTGAGGCAGCGGGCACCAAATGCGCGGATCCCGAAACGAAAATTACCGTGTTAGATGAAGCAGAATCTGATGATGATGAAGATGAAGTTGACGACTCTTGGATTTCAGAAGATGACGAGATGACTTCTTTGGAATGATCTTCTGGATAGTCCTTGATAAAAAATGAACTTTATCAGAGAACCTACCGCCTGTCATAGGAAAATCAGTTGCAAATTTATGAGCGCAAGATGTCCGACAAGTCTGAAAACCAAAATTTTTAGTTTGATTATTACATTGTTACCGATTTCCAAATGCTTCTCACAACCCGAAACGATCACATTAAGCGTTTCATCCTTTCGTTCAATAATACCTCCTTATCAAACCAAATATTTCTGCTACTTGTATGACATCCTCCATACCAGAACGCCTTACAAGCTTTGGCTTTTGCATCGTAGTAACTTCTCACAACCCAAGAATCTCCTAAACAATCTTCATCCCACTTCGGATCATATTCGTCGTCACATGGATCATTAATGGATCGAGTAGTAGGTGTCTTATTAGTTGGTTCTGACTTCAGTGGTGTTGTCTGTTTCGTTTGTTCCATCCATGTGATAGTGGGTACTGTGGGTGGAGATTTATCAATGATTGTCACAACTTCTGGTTTTTGAAAGTCGTATTTGATGTAATCATTACTAGCCGATTCAATTCTTCTCACGAACTCCTCTGGTTTTGTGTACCCTGGATGTCCTCCAGACTTCATATCGTGAACAACCCTATCAATGTGACTATAAAACGCCGGTTCGATTTCCGCTTTATCTCCTTCTGATACATTCACAATGTTCCCAGCAGTTGGAAGGGGTCCCTTTGTTTTGAATGATGGTGTCGGAAGAAGGCGGAGAAGTCGTTGCTCTTCTAAGCGCTGGAAATTTCCATCTAATTCGACGACTTTTCTATGCTTTTGTTCGGGGAAAAGATCTTCAG</canonical>
            <polymorphic>ACGTGTGCCTTTATTTTCAGAATGATTGGACTTGATAATTTTGAGGCAGCGGGCACCAAATGCGCGGATCCCGAAACGAAAATTACCGTGTTAGATGAAGCAGAATCTGATGATGATGAAGATGAAGTTGACGACTCTTGGATTTCAGAAGATGACGAGATGACTTCTTTGGAATGATCTTCTGGATAGTCCTTGATAAAAAATGAACTTTATCAGAGAACCTACCGCCTGTCATAGGAAAATCAGTTGCAAATTTATGAGCGCAAGATGTCCGACAAGTCTGAAAACCAAAATTTTTAGTTTGATTATTACATTGTTACCGATTTCCAAATGCTTCTCACAACCCGAAACGATCACATTAAGCGTTTCATCCTTTCGTTCAATAATACCTCCTTATCAAACCAAATATTTCTGCTACTTGTATGACATCCTCCATACCAGAACGCCTTACAAGCTTTGGCTTTTGCATCGTAGTAACTTCTCACAACCCAAGAATCTCYTAAACAATCTTCATCCCACTTCGGATCATATTCGTCGTCACATGGATCATTAATGGATCGAGTAGTAGGTGTCTTATTAGTTGGTTCTGACTTCAGTGGTGTTGTCTGTTTCGTTTGTTCCATCCATGTGATAGTGGGTACTGTGGGTGGAGATTTATCAATGATTGTCACAACTTCTGGTTTTTGAAAGTCGTATTTGATGTAATCATTACTAGCCGATTCAATTCTTCTCACGAACTCCTCTGGTTTTGTGTACCCTGGATGTCCTCCAGACTTCATATCGTGAACAACCCTATCAATGTGACTATAAAACGCCGGTTCGATTTCCGCTTTATCTCCTTCTGATACATTCACAATGTTCCCAGCAGTTGGAAGGGGTCCCTTTGTTTTGAATGATGGTGTCGGAAGAAGGCGGAGAAGTCGTTGCTCTTCTAAGCGCTGGAAATTTCCATCTAATTCGACGACTTTTCTATGCTTTTGTTCGGGGAAAAGATCTTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCTTTCGTTCAATAATACCTC</pcr_primer_p1>
		<pcr_primer_p2>AACAAACGAAACAGACAACAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCCTTTCGTTCAATAATACCTCCTTATCAAACCAAATATTTCTGCTACTTGTATGACATCCTCCATACCAGAACGCCTTACAAGCTTTGGCTTTTGCATCGTAGTAACTTCTCACAACCCAAGAATCTCCTAAACAATCTTCATCCCACTTCGGATCATATTCGTCGTCACATGGATCATTAATGGATCGAGTAGTAGGTGTCTTATTAGTTGGTTCTGACTTCAGTGGTGTTGTCTGTTTCGTTTGTT</canonical_amplicon>
		<polymorphic_amplicon>ATCCTTTCGTTCAATAATACCTCCTTATCAAACCAAATATTTCTGCTACTTGTATGACATCCTCCATACCAGAACGCCTTACAAGCTTTGGCTTTTGCATCGTAGTAACTTCTCACAACCCAAGAATCTCYTAAACAATCTTCATCCCACTTCGGATCATATTCGTCGTCACATGGATCATTAATGGATCGAGTAGTAGGTGTCTTATTAGTTGGTTCTGACTTCAGTGGTGTTGTCTGTTTCGTTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30253</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>683013</contig_pos>
        <strand>+</strand>
        <context>ACTCTTCTCA[G/T]TTAACGCTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTCATTTTTTTCAAATAAGATTCACTTCTATAACTAAAAACTCTTCTCA</left_flank>
        <right_flank>TTAACGCTGAATCCTCATTTTTTATCTACTGCTCAAGAACAGGTTTCTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAGCTCCGAGTTACGCTGAAAATTCAACTGGAAGAGTGGATATTCTCTTGATTATAGAACATCAGAAGCTGTTGACACTGGTGGGTTTTCGATTCTGTATCTTTCTAAAATAGTATTCACAAAACTGATTATTCAGAATGAAGAAAAATCGTCAGTTGATATTTCGTTTGAAATTTGCTTTGAATGGGAAACAAGAAGTAGGAAAGTCCCAAGAAGTCGAGAGCTAGCAACATGGAATGAGTTGGACGCATTCGGAATCATCACTGAGAATCTGTAAAAAATGTTTATCTGTAAATCAGTAAATTCGGATATAATATTTTTCAGAGAGAGCTCCCAAATTTCCAAAAGTATCATAACGAAAGAGAATCAGGTTCAAAATGTGCGATCCATCCGTTTTGTATCAATTCAGTCCGAGAAGCCATTGGATTTTTCTGCTTTCCCAAGTGATTCTCATTTTTTTCAAATAAGATTCACTTCTATAACTAAAAACTCTTCTCAGTTAACGCTGAATCCTCATTTTTTATCTACTGCTCAAGAACAGGTTTCTATTTTGCTTTGAAAATCGAAATTTTCATTATTTTCAGACAGAATCCCACTACAAATTCGAAGTTTCAAAAGCATTCGTACAGTGGGTTGTACACAAAAATGAATCCTTTGAACAGGCAATTTTTGAATTCCGTGTTATTCGAAGACCTTCTCCATCTCTTCGAGTTTCCATGTTTCTATTGTTCCTAGTCAATGTAGCCATGACCTTCGATTACTTTCCAGTGTCAAGATTATTTCAAAAAAGGCCCAAATCGGTTAGTACTGAACTTGGATTTTAAATATGATCGAAACTTATGGGGTTATTGAGTGGGAAACAAATCAGCAAATTTCTGGTTTTTTCCTTATTTAACCCATCAATTTGCTGGGGCCGTTTGCTGGAGTTTTCTAGGCCATTTCTGGTGGAGCTACACAGCCAGTCTAAGCGAGATTCAAGCAGGGAACTCCGTGCGCCTT</canonical>
            <polymorphic>TTAGCTCCGAGTTACGCTGAAAATTCAACTGGAAGAGTGGATATTCTCTTGATTATAGAACATCAGAAGCTGTTGACACTGGTGGGTTTTCGATTCTGTATCTTTCTAAAATAGTATTCACAAAACTGATTATTCAGAATGAAGAAAAATCGTCAGTTGATATTTCGTTTGAAATTTGCTTTGAATGGGAAACAAGAAGTAGGAAAGTCCCAAGAAGTCGAGAGCTAGCAACATGGAATGAGTTGGACGCATTCGGAATCATCACTGAGAATCTGTAAAAAATGTTTATCTGTAAATCAGTAAATTCGGATATAATATTTTTCAGAGAGAGCTCCCAAATTTCCAAAAGTATCATAACGAAAGAGAATCAGGTTCAAAATGTGCGATCCATCCGTTTTGTATCAATTCAGTCCGAGAAGCCATTGGATTTTTCTGCTTTCCCAAGTGATTCTCATTTTTTTCAAATAAGATTCACTTCTATAACTAAAAACTCTTCTCAKTTAACGCTGAATCCTCATTTTTTATCTACTGCTCAAGAACAGGTTTCTATTTTGCTTTGAAAATCGAAATTTTCATTATTTTCAGACAGAATCCCACTACAAATTCGAAGTTTCAAAAGCATTCGTACAGTGGGTTGTACACAAAAATGAATCCTTTGAACAGGCAATTTTTGAATTCCGTGTTATTCGAAGACCTTCTCCATCTCTTCGAGTTTCCATGTTTCTATTGTTCCTAGTCAATGTAGCCATGACCTTCGATTACTTTCCAGTGTCAAGATTATTTCAAAAAAGGCCCAAATCGGTTAGTACTGAACTTGGATTTTAAATATGATCGAAACTTATGGGGTTATTGAGTGGGAAACAAATCAGCAAATTTCTGGTTTTTTCCTTATTTAACCCATCAATTTGCTGGGGCCGTTTGCTGGAGTTTTCTAGGCCATTTCTGGTGGAGCTACACAGCCAGTCTAAGCGAGATTCAAGCAGGGAACTCCGTGCGCCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>469 265 231 35</canonical_bands>
                <polymorphic_bands>700 265 35</polymorphic_bands>
            </assay>
            <assay>
                <site>GTTAAC</site>
                <isoschizomers>
                    <enzyme>BstHPI</enzyme>
                    <enzyme>HpaI</enzyme>
                    <enzyme>KspAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>498 428 74</canonical_bands>
                <polymorphic_bands>926 74</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>428 361 137 74</canonical_bands>
                <polymorphic_bands>565 361 74</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCATAACGAAAGAGAATCAGGT</pcr_primer_p1>
		<pcr_primer_p2>TAGTGGGATTCTGTCTGAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCATAACGAAAGAGAATCAGGTTCAAAATGTGCGATCCATCCGTTTTGTATCAATTCAGTCCGAGAAGCCATTGGATTTTTCTGCTTTCCCAAGTGATTCTCATTTTTTTCAAATAAGATTCACTTCTATAACTAAAAACTCTTCTCAGTTAACGCTGAATCCTCATTTTTTATCTACTGCTCAAGAACAGGTTTCTATTTTGCTTTGAAAATCGAAATTTTCATTATTTTCAGACAGAATCCCACTA</canonical_amplicon>
		<polymorphic_amplicon>ATCATAACGAAAGAGAATCAGGTTCAAAATGTGCGATCCATCCGTTTTGTATCAATTCAGTCCGAGAAGCCATTGGATTTTTCTGCTTTCCCAAGTGATTCTCATTTTTTTCAAATAAGATTCACTTCTATAACTAAAAACTCTTCTCAKTTAACGCTGAATCCTCATTTTTTATCTACTGCTCAAGAACAGGTTTCTATTTTGCTTTGAAAATCGAAATTTTCATTATTTTCAGACAGAATCCCACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30254</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>683371</contig_pos>
        <strand></strand>
        <context>tattgagtgg[G/A]aaacaaatca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACTGAACTTGGATTTTAAATATGATCGAAACTTATGGGGTTATTGAGTGG</left_flank>
        <right_flank>AAACAAATCAGCAAATTTCTGGTTTTTTCCTTATTTAACCCATCAATTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAGAGAATCAGGTTCAAAATGTGCGATCCATCCGTTTTGTATCAATTCAGTCCGAGAAGCCATTGGATTTTTCTGCTTTCCCAAGTGATTCTCATTTTTTTCAAATAAGATTCACTTCTATAACTAAAAACTCTTCTCAGTTAACGCTGAATCCTCATTTTTTATCTACTGCTCAAGAACAGGTTTCTATTTTGCTTTGAAAATCGAAATTTTCATTATTTTCAGACAGAATCCCACTACAAATTCGAAGTTTCAAAAGCATTCGTACAGTGGGTTGTACACAAAAATGAATCCTTTGAACAGGCAATTTTTGAATTCCGTGTTATTCGAAGACCTTCTCCATCTCTTCGAGTTTCCATGTTTCTATTGTTCCTAGTCAATGTAGCCATGACCTTCGATTACTTTCCAGTGTCAAGATTATTTCAAAAAAGGCCCAAATCGGTTAGTACTGAACTTGGATTTTAAATATGATCGAAACTTATGGGGTTATTGAGTGGGAAACAAATCAGCAAATTTCTGGTTTTTTCCTTATTTAACCCATCAATTTGCTGGGGCCGTTTGCTGGAGTTTTCTAGGCCATTTCTGGTGGAGCTACACAGCCAGTCTAAGCGAGATTCAAGCAGGGAACTCCGTGCGCCTTTAATTTTCGAGCTCGTAAATCGCTGGTCGTGTAGCTCCACGAGAACAAGCCATGGCTTAGAAAACTCCAGCAAACGGCCTCAGCAAGTTGCTGGGTTTCGGCATAAGGAAAAAACTAGACATTTGCTGATTATTCAGGGATTCTATCTATGTTGTGGATTGCTCATAAGTATGGTGGCTGCTAGACAAAGTCCCAAGTTTGGAGAGTTGACCAGTTACGGTGAGAAAATTATTTTGAAGATATATTAAAAACAAATAAGTTCCAGATTACCAACTAATGGCTCTTCTCCTCCTCGGACTTCTCATTGAAATACTGCATCAGCTTCTTCCATTTCTAGTTTTTCATTTGAGATGTTGTC</canonical>
            <polymorphic>GAAAGAGAATCAGGTTCAAAATGTGCGATCCATCCGTTTTGTATCAATTCAGTCCGAGAAGCCATTGGATTTTTCTGCTTTCCCAAGTGATTCTCATTTTTTTCAAATAAGATTCACTTCTATAACTAAAAACTCTTCTCAGTTAACGCTGAATCCTCATTTTTTATCTACTGCTCAAGAACAGGTTTCTATTTTGCTTTGAAAATCGAAATTTTCATTATTTTCAGACAGAATCCCACTACAAATTCGAAGTTTCAAAAGCATTCGTACAGTGGGTTGTACACAAAAATGAATCCTTTGAACAGGCAATTTTTGAATTCCGTGTTATTCGAAGACCTTCTCCATCTCTTCGAGTTTCCATGTTTCTATTGTTCCTAGTCAATGTAGCCATGACCTTCGATTACTTTCCAGTGTCAAGATTATTTCAAAAAAGGCCCAAATCGGTTAGTACTGAACTTGGATTTTAAATATGATCGAAACTTATGGGGTTATTGAGTGGRAAACAAATCAGCAAATTTCTGGTTTTTTCCTTATTTAACCCATCAATTTGCTGGGGCCGTTTGCTGGAGTTTTCTAGGCCATTTCTGGTGGAGCTACACAGCCAGTCTAAGCGAGATTCAAGCAGGGAACTCCGTGCGCCTTTAATTTTCGAGCTCGTAAATCGCTGGTCGTGTAGCTCCACGAGAACAAGCCATGGCTTAGAAAACTCCAGCAAACGGCCTCAGCAAGTTGCTGGGTTTCGGCATAAGGAAAAAACTAGACATTTGCTGATTATTCAGGGATTCTATCTATGTTGTGGATTGCTCATAAGTATGGTGGCTGCTAGACAAAGTCCCAAGTTTGGAGAGTTGACCAGTTACGGTGAGAAAATTATTTTGAAGATATATTAAAAACAAATAAGTTCCAGATTACCAACTAATGGCTCTTCTCCTCCTCGGACTTCTCATTGAAATACTGCATCAGCTTCTTCCATTTCTAGTTTTTCATTTGAGATGTTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAGTGTCAAGATTATTTCAA</pcr_primer_p1>
		<pcr_primer_p2>ACAACATAGATAGAATCCCTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>391</pcr_amplicon_size>
		<canonical_amplicon>TCCAGTGTCAAGATTATTTCAAAAAAGGCCCAAATCGGTTAGTACTGAACTTGGATTTTAAATATGATCGAAACTTATGGGGTTATTGAGTGGGAAACAAATCAGCAAATTTCTGGTTTTTTCCTTATTTAACCCATCAATTTGCTGGGGCCGTTTGCTGGAGTTTTCTAGGCCATTTCTGGTGGAGCTACACAGCCAGTCTAAGCGAGATTCAAGCAGGGAACTCCGTGCGCCTTTAATTTTCGAGCTCGTAAATCGCTGGTCGTGTAGCTCCACGAGAACAAGCCATGGCTTAGAAAACTCCAGCAAACGGCCTCAGCAAGTTGCTGGGTTTCGGCATAAGGAAAAAACTAGACATTTGCTGATTATTCAGGGATTCTATCTATGTTGT</canonical_amplicon>
		<polymorphic_amplicon>TCCAGTGTCAAGATTATTTCAAAAAAGGCCCAAATCGGTTAGTACTGAACTTGGATTTTAAATATGATCGAAACTTATGGGGTTATTGAGTGGRAAACAAATCAGCAAATTTCTGGTTTTTTCCTTATTTAACCCATCAATTTGCTGGGGCCGTTTGCTGGAGTTTTCTAGGCCATTTCTGGTGGAGCTACACAGCCAGTCTAAGCGAGATTCAAGCAGGGAACTCCGTGCGCCTTTAATTTTCGAGCTCGTAAATCGCTGGTCGTGTAGCTCCACGAGAACAAGCCATGGCTTAGAAAACTCCAGCAAACGGCCTCAGCAAGTTGCTGGGTTTCGGCATAAGGAAAAAACTAGACATTTGCTGATTATTCAGGGATTCTATCTATGTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30255</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>761568</contig_pos>
        <strand>+</strand>
        <context>GTCCAAATAT[G/T]GTCACATTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTAAGGATAGAAGATCCACGCTTACACCTCCGGCACTCTGTCCAAATAT</left_flank>
        <right_flank>GTCACATTATTAGGATCTCCTCCAAACGATGCGATGTGTTTTTGGACCCA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGTAGAGAGCTAAACCAAAAAGCAATCCCTCATGCTCTGCCATTCCAATCATCACTGGCTTATTTGATGCTTCAATTCTCAATTCTTCCAGTGGTTTGGGAAAGAAGTCATAATCAAGGTTTGGTCCAAAAGAGACCATTCCAGATGCCGAATGCTCAAAACCTGACCTTTCCAGAAGTTTCTCCACTGGCAAGTTTTTCATAAACTCGAACAACTCTGTTGATCCTAAAGTTCAAATTTAATGTTCATTGTGAAAGAAGCGAGTACCTGATCCAGTGAATCCTTTGTTCCGAGCGTATTCCAGTGATACCTCAAGCTGGTATCTGGCGGTTCTGATTGCAAATGGAACATGAGCACTGCCGGACATTGGTAAGAATTTATGGAATAGGTCTGAATTATTCATGTTTTTTTTAAATCTAACTTCTGAAAGTACCTCTGGAATGTGGACTTAAGGATAGAAGATCCACGCTTACACCTCCGGCACTCTGTCCAAATATTGTCACATTATTAGGATCTCCTCCAAACGATGCGATGTGTTTTTGGACCCACTTCAGAGCAAGTGTTTGGTCCCATAAACCAAAGTTTCCCGGACAAGTTTCGTCTCCTGTGGAGAAAAAACCGAGTGCTCCAAGACGATAGTTTATGGTTACTACCAAAACATCTTTTAGAGGTAAAGTTCCTGTCAACGAGTAGTCACAATAATCTCGAGAAGCACAAAGTTCGAAACCTCCACCATGAATGAATACCATGACAGGTCTCTTGATCTGAAAAATTGGTTGTCCCCTACTATAACTGTTCGAGCTTATTACATATTCTTTACATTGCCATCTTGGACGAAACACATTCAACGTCAAACAGTTCGCTTCATCCGGCACGTCTTGATTTTTAAGATCGATCTTTTCATAAAACATTCCAGAAGACGGACATCGTGGACCATATTCAAAGCAATCTCTGGGTTCCGACCAGACATCTACCAAAACTGGTTTCCTAAATCTCAA</canonical>
            <polymorphic>TGTGTAGAGAGCTAAACCAAAAAGCAATCCCTCATGCTCTGCCATTCCAATCATCACTGGCTTATTTGATGCTTCAATTCTCAATTCTTCCAGTGGTTTGGGAAAGAAGTCATAATCAAGGTTTGGTCCAAAAGAGACCATTCCAGATGCCGAATGCTCAAAACCTGACCTTTCCAGAAGTTTCTCCACTGGCAAGTTTTTCATAAACTCGAACAACTCTGTTGATCCTAAAGTTCAAATTTAATGTTCATTGTGAAAGAAGCGAGTACCTGATCCAGTGAATCCTTTGTTCCGAGCGTATTCCAGTGATACCTCAAGCTGGTATCTGGCGGTTCTGATTGCAAATGGAACATGAGCACTGCCGGACATTGGTAAGAATTTATGGAATAGGTCTGAATTATTCATGTTTTTTTTAAATCTAACTTCTGAAAGTACCTCTGGAATGTGGACTTAAGGATAGAAGATCCACGCTTACACCTCCGGCACTCTGTCCAAATATKGTCACATTATTAGGATCTCCTCCAAACGATGCGATGTGTTTTTGGACCCACTTCAGAGCAAGTGTTTGGTCCCATAAACCAAAGTTTCCCGGACAAGTTTCGTCTCCTGTGGAGAAAAAACCGAGTGCTCCAAGACGATAGTTTATGGTTACTACCAAAACATCTTTTAGAGGTAAAGTTCCTGTCAACGAGTAGTCACAATAATCTCGAGAAGCACAAAGTTCGAAACCTCCACCATGAATGAATACCATGACAGGTCTCTTGATCTGAAAAATTGGTTGTCCCCTACTATAACTGTTCGAGCTTATTACATATTCTTTACATTGCCATCTTGGACGAAACACATTCAACGTCAAACAGTTCGCTTCATCCGGCACGTCTTGATTTTTAAGATCGATCTTTTCATAAAACATTCCAGAAGACGGACATCGTGGACCATATTCAAAGCAATCTCTGGGTTCCGACCAGACATCTACCAAAACTGGTTTCCTAAATCTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGACTTAAGGATAGAAGATCCAC</pcr_primer_p1>
		<pcr_primer_p2>ACTACTCGTTGACAGGAACTTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGACTTAAGGATAGAAGATCCACGCTTACACCTCCGGCACTCTGTCCAAATATTGTCACATTATTAGGATCTCCTCCAAACGATGCGATGTGTTTTTGGACCCACTTCAGAGCAAGTGTTTGGTCCCATAAACCAAAGTTTCCCGGACAAGTTTCGTCTCCTGTGGAGAAAAAACCGAGTGCTCCAAGACGATAGTTTATGGTTACTACCAAAACATCTTTTAGAGGTAAAGTTCCTGTCAACGAGTAGT</canonical_amplicon>
		<polymorphic_amplicon>GGACTTAAGGATAGAAGATCCACGCTTACACCTCCGGCACTCTGTCCAAATATKGTCACATTATTAGGATCTCCTCCAAACGATGCGATGTGTTTTTGGACCCACTTCAGAGCAAGTGTTTGGTCCCATAAACCAAAGTTTCCCGGACAAGTTTCGTCTCCTGTGGAGAAAAAACCGAGTGCTCCAAGACGATAGTTTATGGTTACTACCAAAACATCTTTTAGAGGTAAAGTTCCTGTCAACGAGTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30256</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>761702</contig_pos>
        <strand>+</strand>
        <context>AGTGCTCCAA[G/T]ACGATAGTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTTCCCGGACAAGTTTCGTCTCCTGTGGAGAAAAAACCGAGTGCTCCAA</left_flank>
        <right_flank>ACGATAGTTTATGGTTACTACCAAAACATCTTTTAGAGGTAAAGTTCCTG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACCATTCCAGATGCCGAATGCTCAAAACCTGACCTTTCCAGAAGTTTCTCCACTGGCAAGTTTTTCATAAACTCGAACAACTCTGTTGATCCTAAAGTTCAAATTTAATGTTCATTGTGAAAGAAGCGAGTACCTGATCCAGTGAATCCTTTGTTCCGAGCGTATTCCAGTGATACCTCAAGCTGGTATCTGGCGGTTCTGATTGCAAATGGAACATGAGCACTGCCGGACATTGGTAAGAATTTATGGAATAGGTCTGAATTATTCATGTTTTTTTTAAATCTAACTTCTGAAAGTACCTCTGGAATGTGGACTTAAGGATAGAAGATCCACGCTTACACCTCCGGCACTCTGTCCAAATATTGTCACATTATTAGGATCTCCTCCAAACGATGCGATGTGTTTTTGGACCCACTTCAGAGCAAGTGTTTGGTCCCATAAACCAAAGTTTCCCGGACAAGTTTCGTCTCCTGTGGAGAAAAAACCGAGTGCTCCAAGACGATAGTTTATGGTTACTACCAAAACATCTTTTAGAGGTAAAGTTCCTGTCAACGAGTAGTCACAATAATCTCGAGAAGCACAAAGTTCGAAACCTCCACCATGAATGAATACCATGACAGGTCTCTTGATCTGAAAAATTGGTTGTCCCCTACTATAACTGTTCGAGCTTATTACATATTCTTTACATTGCCATCTTGGACGAAACACATTCAACGTCAAACAGTTCGCTTCATCCGGCACGTCTTGATTTTTAAGATCGATCTTTTCATAAAACATTCCAGAAGACGGACATCGTGGACCATATTCAAAGCAATCTCTGGGTTCCGACCAGACATCTACCAAAACTGGTTTCCTAAATCTCAACTCTCCTATTGGTGGTTTGGCATACGGGATGCCTAAAAATCCGTCCTTTCATTTCTCCCCCTAAATGACAAAAATAGAAAAGTTCAGAACCAAAAAACCTACATGTCGATAAAAATTTCCACGAACCGGACCAC</canonical>
            <polymorphic>AGACCATTCCAGATGCCGAATGCTCAAAACCTGACCTTTCCAGAAGTTTCTCCACTGGCAAGTTTTTCATAAACTCGAACAACTCTGTTGATCCTAAAGTTCAAATTTAATGTTCATTGTGAAAGAAGCGAGTACCTGATCCAGTGAATCCTTTGTTCCGAGCGTATTCCAGTGATACCTCAAGCTGGTATCTGGCGGTTCTGATTGCAAATGGAACATGAGCACTGCCGGACATTGGTAAGAATTTATGGAATAGGTCTGAATTATTCATGTTTTTTTTAAATCTAACTTCTGAAAGTACCTCTGGAATGTGGACTTAAGGATAGAAGATCCACGCTTACACCTCCGGCACTCTGTCCAAATATTGTCACATTATTAGGATCTCCTCCAAACGATGCGATGTGTTTTTGGACCCACTTCAGAGCAAGTGTTTGGTCCCATAAACCAAAGTTTCCCGGACAAGTTTCGTCTCCTGTGGAGAAAAAACCGAGTGCTCCAAKACGATAGTTTATGGTTACTACCAAAACATCTTTTAGAGGTAAAGTTCCTGTCAACGAGTAGTCACAATAATCTCGAGAAGCACAAAGTTCGAAACCTCCACCATGAATGAATACCATGACAGGTCTCTTGATCTGAAAAATTGGTTGTCCCCTACTATAACTGTTCGAGCTTATTACATATTCTTTACATTGCCATCTTGGACGAAACACATTCAACGTCAAACAGTTCGCTTCATCCGGCACGTCTTGATTTTTAAGATCGATCTTTTCATAAAACATTCCAGAAGACGGACATCGTGGACCATATTCAAAGCAATCTCTGGGTTCCGACCAGACATCTACCAAAACTGGTTTCCTAAATCTCAACTCTCCTATTGGTGGTTTGGCATACGGGATGCCTAAAAATCCGTCCTTTCATTTCTCCCCCTAAATGACAAAAATAGAAAAGTTCAGAACCAAAAAACCTACATGTCGATAAAAATTTCCACGAACCGGACCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGACTTAAGGATAGAAGATCCAC</pcr_primer_p1>
		<pcr_primer_p2>ACTACTCGTTGACAGGAACTTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGACTTAAGGATAGAAGATCCACGCTTACACCTCCGGCACTCTGTCCAAATATTGTCACATTATTAGGATCTCCTCCAAACGATGCGATGTGTTTTTGGACCCACTTCAGAGCAAGTGTTTGGTCCCATAAACCAAAGTTTCCCGGACAAGTTTCGTCTCCTGTGGAGAAAAAACCGAGTGCTCCAAGACGATAGTTTATGGTTACTACCAAAACATCTTTTAGAGGTAAAGTTCCTGTCAACGAGTAGT</canonical_amplicon>
		<polymorphic_amplicon>GGACTTAAGGATAGAAGATCCACGCTTACACCTCCGGCACTCTGTCCAAATATTGTCACATTATTAGGATCTCCTCCAAACGATGCGATGTGTTTTTGGACCCACTTCAGAGCAAGTGTTTGGTCCCATAAACCAAAGTTTCCCGGACAAGTTTCGTCTCCTGTGGAGAAAAAACCGAGTGCTCCAAKACGATAGTTTATGGTTACTACCAAAACATCTTTTAGAGGTAAAGTTCCTGTCAACGAGTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30257</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>762115</contig_pos>
        <strand>+</strand>
        <context>AAATCCGTCC[A/T]YTSATTTCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAACTCTCCTATTGGTGGTTTGGCATACGGGATGCCTAAAAATCCGTCC</left_flank>
        <right_flank>TTCATTTCTCCCCCTAAATGACAAAAATAGAAAAGTTCAGAACCAAAAAA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACTTCAGAGCAAGTGTTTGGTCCCATAAACCAAAGTTTCCCGGACAAGTTTCGTCTCCTGTGGAGAAAAAACCGAGTGCTCCAAGACGATAGTTTATGGTTACTACCAAAACATCTTTTAGAGGTAAAGTTCCTGTCAACGAGTAGTCACAATAATCTCGAGAAGCACAAAGTTCGAAACCTCCACCATGAATGAATACCATGACAGGTCTCTTGATCTGAAAAATTGGTTGTCCCCTACTATAACTGTTCGAGCTTATTACATATTCTTTACATTGCCATCTTGGACGAAACACATTCAACGTCAAACAGTTCGCTTCATCCGGCACGTCTTGATTTTTAAGATCGATCTTTTCATAAAACATTCCAGAAGACGGACATCGTGGACCATATTCAAAGCAATCTCTGGGTTCCGACCAGACATCTACCAAAACTGGTTTCCTAAATCTCAACTCTCCTATTGGTGGTTTGGCATACGGGATGCCTAAAAATCCGTCCTTTCATTTCTCCCCCTAAATGACAAAAATAGAAAAGTTCAGAACCAAAAAACCTACATGTCGATAAAAATTTCCACGAACCGGACCACACGATGCGAAGAATACATTCGAATGGTGTTCCGGTTTGAGATGTGAGAGATGGCCACCCATTTCTGTTTTATCCTATTAGTACAAGTCTCCTTTTATATTGAAACCGAACAGGGAGGGACTGGAACACTAACGAGGTGAACAAATCAACAAAAAAAATCGTCTGGATTTTCTCTACCAAAACCTATTTGTGTTGGACTAATACATCAGCGGTAGTGGAGGTCTGTCTCGTGGTTTTTGAGTGGTTTCTTTGAAAAATTGGAACGTTGTTTGTTGAGGTTTACTGTCAGAATCGTAACAAATTTATTGAAAAGTACAAAATACAAAAGTTGGTGTTGAATTGTTGGTGTTGAATTTAACAAGTCAATTAGGATCTTCCATAAACCACGGTTTCCAGATTCTTGTTGTTCTTTCT</canonical>
            <polymorphic>CCACTTCAGAGCAAGTGTTTGGTCCCATAAACCAAAGTTTCCCGGACAAGTTTCGTCTCCTGTGGAGAAAAAACCGAGTGCTCCAAGACGATAGTTTATGGTTACTACCAAAACATCTTTTAGAGGTAAAGTTCCTGTCAACGAGTAGTCACAATAATCTCGAGAAGCACAAAGTTCGAAACCTCCACCATGAATGAATACCATGACAGGTCTCTTGATCTGAAAAATTGGTTGTCCCCTACTATAACTGTTCGAGCTTATTACATATTCTTTACATTGCCATCTTGGACGAAACACATTCAACGTCAAACAGTTCGCTTCATCCGGCACGTCTTGATTTTTAAGATCGATCTTTTCATAAAACATTCCAGAAGACGGACATCGTGGACCATATTCAAAGCAATCTCTGGGTTCCGACCAGACATCTACCAAAACTGGTTTCCTAAATCTCAACTCTCCTATTGGTGGTTTGGCATACGGGATGCCTAAAAATCCGTCCWTTCATTTCTCCCCCTAAATGACAAAAATAGAAAAGTTCAGAACCAAAAAACCTACATGTCGATAAAAATTTCCACGAACCGGACCACACGATGCGAAGAATACATTCGAATGGTGTTCCGGTTTGAGATGTGAGAGATGGCCACCCATTTCTGTTTTATCCTATTAGTACAAGTCTCCTTTTATATTGAAACCGAACAGGGAGGGACTGGAACACTAACGAGGTGAACAAATCAACAAAAAAAATCGTCTGGATTTTCTCTACCAAAACCTATTTGTGTTGGACTAATACATCAGCGGTAGTGGAGGTCTGTCTCGTGGTTTTTGAGTGGTTTCTTTGAAAAATTGGAACGTTGTTTGTTGAGGTTTACTGTCAGAATCGTAACAAATTTATTGAAAAGTACAAAATACAAAAGTTGGTGTTGAATTGTTGGTGTTGAATTTAACAAGTCAATTAGGATCTTCCATAAACCACGGTTTCCAGATTCTTGTTGTTCTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCACGTCTTGATTTTTAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTATCGACATGTAGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GGCACGTCTTGATTTTTAAGATCGATCTTTTCATAAAACATTCCAGAAGACGGACATCGTGGACCATATTCAAAGCAATCTCTGGGTTCCGACCAGACATCTACCAAAACTGGTTTCCTAAATCTCAACTCTCCTATTGGTGGTTTGGCATACGGGATGCCTAAAAATCCGTCCTTTCATTTCTCCCCCTAAATGACAAAAATAGAAAAGTTCAGAACCAAAAAACCTACATGTCGATAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGCACGTCTTGATTTTTAAGATCGATCTTTTCATAAAACATTCCAGAAGACGGACATCGTGGACCATATTCAAAGCAATCTCTGGGTTCCGACCAGACATCTACCAAAACTGGTTTCCTAAATCTCAACTCTCCTATTGGTGGTTTGGCATACGGGATGCCTAAAAATCCGTCCWTTCATTTCTCCCCCTAAATGACAAAAATAGAAAAGTTCAGAACCAAAAAACCTACATGTCGATAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30258</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>762118</contig_pos>
        <strand>+</strand>
        <context>TCCGTCCWYT[C/G]ATTTCTCCCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACTCTCCTATTGGTGGTTTGGCATACGGGATGCCTAAAAATCCGTCCTTT</left_flank>
        <right_flank>ATTTCTCCCCCTAAATGACAAAAATAGAAAAGTTCAGAACCAAAAAACCT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCAGAGCAAGTGTTTGGTCCCATAAACCAAAGTTTCCCGGACAAGTTTCGTCTCCTGTGGAGAAAAAACCGAGTGCTCCAAGACGATAGTTTATGGTTACTACCAAAACATCTTTTAGAGGTAAAGTTCCTGTCAACGAGTAGTCACAATAATCTCGAGAAGCACAAAGTTCGAAACCTCCACCATGAATGAATACCATGACAGGTCTCTTGATCTGAAAAATTGGTTGTCCCCTACTATAACTGTTCGAGCTTATTACATATTCTTTACATTGCCATCTTGGACGAAACACATTCAACGTCAAACAGTTCGCTTCATCCGGCACGTCTTGATTTTTAAGATCGATCTTTTCATAAAACATTCCAGAAGACGGACATCGTGGACCATATTCAAAGCAATCTCTGGGTTCCGACCAGACATCTACCAAAACTGGTTTCCTAAATCTCAACTCTCCTATTGGTGGTTTGGCATACGGGATGCCTAAAAATCCGTCCTTTCATTTCTCCCCCTAAATGACAAAAATAGAAAAGTTCAGAACCAAAAAACCTACATGTCGATAAAAATTTCCACGAACCGGACCACACGATGCGAAGAATACATTCGAATGGTGTTCCGGTTTGAGATGTGAGAGATGGCCACCCATTTCTGTTTTATCCTATTAGTACAAGTCTCCTTTTATATTGAAACCGAACAGGGAGGGACTGGAACACTAACGAGGTGAACAAATCAACAAAAAAAATCGTCTGGATTTTCTCTACCAAAACCTATTTGTGTTGGACTAATACATCAGCGGTAGTGGAGGTCTGTCTCGTGGTTTTTGAGTGGTTTCTTTGAAAAATTGGAACGTTGTTTGTTGAGGTTTACTGTCAGAATCGTAACAAATTTATTGAAAAGTACAAAATACAAAAGTTGGTGTTGAATTGTTGGTGTTGAATTTAACAAGTCAATTAGGATCTTCCATAAACCACGGTTTCCAGATTCTTGTTGTTCTTTCTCAC</canonical>
            <polymorphic>CTTCAGAGCAAGTGTTTGGTCCCATAAACCAAAGTTTCCCGGACAAGTTTCGTCTCCTGTGGAGAAAAAACCGAGTGCTCCAAGACGATAGTTTATGGTTACTACCAAAACATCTTTTAGAGGTAAAGTTCCTGTCAACGAGTAGTCACAATAATCTCGAGAAGCACAAAGTTCGAAACCTCCACCATGAATGAATACCATGACAGGTCTCTTGATCTGAAAAATTGGTTGTCCCCTACTATAACTGTTCGAGCTTATTACATATTCTTTACATTGCCATCTTGGACGAAACACATTCAACGTCAAACAGTTCGCTTCATCCGGCACGTCTTGATTTTTAAGATCGATCTTTTCATAAAACATTCCAGAAGACGGACATCGTGGACCATATTCAAAGCAATCTCTGGGTTCCGACCAGACATCTACCAAAACTGGTTTCCTAAATCTCAACTCTCCTATTGGTGGTTTGGCATACGGGATGCCTAAAAATCCGTCCTTTSATTTCTCCCCCTAAATGACAAAAATAGAAAAGTTCAGAACCAAAAAACCTACATGTCGATAAAAATTTCCACGAACCGGACCACACGATGCGAAGAATACATTCGAATGGTGTTCCGGTTTGAGATGTGAGAGATGGCCACCCATTTCTGTTTTATCCTATTAGTACAAGTCTCCTTTTATATTGAAACCGAACAGGGAGGGACTGGAACACTAACGAGGTGAACAAATCAACAAAAAAAATCGTCTGGATTTTCTCTACCAAAACCTATTTGTGTTGGACTAATACATCAGCGGTAGTGGAGGTCTGTCTCGTGGTTTTTGAGTGGTTTCTTTGAAAAATTGGAACGTTGTTTGTTGAGGTTTACTGTCAGAATCGTAACAAATTTATTGAAAAGTACAAAATACAAAAGTTGGTGTTGAATTGTTGGTGTTGAATTTAACAAGTCAATTAGGATCTTCCATAAACCACGGTTTCCAGATTCTTGTTGTTCTTTCTCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTCTCCTATTGGTGGTTTG</pcr_primer_p1>
		<pcr_primer_p2>GTTCGGTTTCAATATAAAAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AACTCTCCTATTGGTGGTTTGGCATACGGGATGCCTAAAAATCCGTCCTTTCATTTCTCCCCCTAAATGACAAAAATAGAAAAGTTCAGAACCAAAAAACCTACATGTCGATAAAAATTTCCACGAACCGGACCACACGATGCGAAGAATACATTCGAATGGTGTTCCGGTTTGAGATGTGAGAGATGGCCACCCATTTCTGTTTTATCCTATTAGTACAAGTCTCCTTTTATATTGAAACCGAAC</canonical_amplicon>
		<polymorphic_amplicon>AACTCTCCTATTGGTGGTTTGGCATACGGGATGCCTAAAAATCCGTCCTTTSATTTCTCCCCCTAAATGACAAAAATAGAAAAGTTCAGAACCAAAAAACCTACATGTCGATAAAAATTTCCACGAACCGGACCACACGATGCGAAGAATACATTCGAATGGTGTTCCGGTTTGAGATGTGAGAGATGGCCACCCATTTCTGTTTTATCCTATTAGTACAAGTCTCCTTTTATATTGAAACCGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30259</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>762313</contig_pos>
        <strand>+</strand>
        <context>GAAACCGAAC[A/G]GGGAGGGACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCTGTTTTATCCTATTAGTACAAGTCTCCTTTTATATTGAAACCGAAC</left_flank>
        <right_flank>GGGAGGGACTGGAACACTAACGAGGTGAACAAATCAACAAAAAAAATCGT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACCATGACAGGTCTCTTGATCTGAAAAATTGGTTGTCCCCTACTATAACTGTTCGAGCTTATTACATATTCTTTACATTGCCATCTTGGACGAAACACATTCAACGTCAAACAGTTCGCTTCATCCGGCACGTCTTGATTTTTAAGATCGATCTTTTCATAAAACATTCCAGAAGACGGACATCGTGGACCATATTCAAAGCAATCTCTGGGTTCCGACCAGACATCTACCAAAACTGGTTTCCTAAATCTCAACTCTCCTATTGGTGGTTTGGCATACGGGATGCCTAAAAATCCGTCCTTTCATTTCTCCCCCTAAATGACAAAAATAGAAAAGTTCAGAACCAAAAAACCTACATGTCGATAAAAATTTCCACGAACCGGACCACACGATGCGAAGAATACATTCGAATGGTGTTCCGGTTTGAGATGTGAGAGATGGCCACCCATTTCTGTTTTATCCTATTAGTACAAGTCTCCTTTTATATTGAAACCGAACAGGGAGGGACTGGAACACTAACGAGGTGAACAAATCAACAAAAAAAATCGTCTGGATTTTCTCTACCAAAACCTATTTGTGTTGGACTAATACATCAGCGGTAGTGGAGGTCTGTCTCGTGGTTTTTGAGTGGTTTCTTTGAAAAATTGGAACGTTGTTTGTTGAGGTTTACTGTCAGAATCGTAACAAATTTATTGAAAAGTACAAAATACAAAAGTTGGTGTTGAATTGTTGGTGTTGAATTTAACAAGTCAATTAGGATCTTCCATAAACCACGGTTTCCAGATTCTTGTTGTTCTTTCTCACTTCTTTCAGGTATTCCATTCTTTCCGGACAATACTCATCTCTCATATTGCCACGTGGATAACTAATTCGATAATGTCTCCGTTGGTGTTCCGGATTGTATCGTTCCCATTCTTGTGATCCAGTTTCATTTGGATTTCTGAAAAAAGTGGTTAAATTGTCCTTGAACATAAGAAAATGATTACCCATATTTTCCAA</canonical>
            <polymorphic>TACCATGACAGGTCTCTTGATCTGAAAAATTGGTTGTCCCCTACTATAACTGTTCGAGCTTATTACATATTCTTTACATTGCCATCTTGGACGAAACACATTCAACGTCAAACAGTTCGCTTCATCCGGCACGTCTTGATTTTTAAGATCGATCTTTTCATAAAACATTCCAGAAGACGGACATCGTGGACCATATTCAAAGCAATCTCTGGGTTCCGACCAGACATCTACCAAAACTGGTTTCCTAAATCTCAACTCTCCTATTGGTGGTTTGGCATACGGGATGCCTAAAAATCCGTCCTTTCATTTCTCCCCCTAAATGACAAAAATAGAAAAGTTCAGAACCAAAAAACCTACATGTCGATAAAAATTTCCACGAACCGGACCACACGATGCGAAGAATACATTCGAATGGTGTTCCGGTTTGAGATGTGAGAGATGGCCACCCATTTCTGTTTTATCCTATTAGTACAAGTCTCCTTTTATATTGAAACCGAACRGGGAGGGACTGGAACACTAACGAGGTGAACAAATCAACAAAAAAAATCGTCTGGATTTTCTCTACCAAAACCTATTTGTGTTGGACTAATACATCAGCGGTAGTGGAGGTCTGTCTCGTGGTTTTTGAGTGGTTTCTTTGAAAAATTGGAACGTTGTTTGTTGAGGTTTACTGTCAGAATCGTAACAAATTTATTGAAAAGTACAAAATACAAAAGTTGGTGTTGAATTGTTGGTGTTGAATTTAACAAGTCAATTAGGATCTTCCATAAACCACGGTTTCCAGATTCTTGTTGTTCTTTCTCACTTCTTTCAGGTATTCCATTCTTTCCGGACAATACTCATCTCTCATATTGCCACGTGGATAACTAATTCGATAATGTCTCCGTTGGTGTTCCGGATTGTATCGTTCCCATTCTTGTGATCCAGTTTCATTTGGATTTCTGAAAAAAGTGGTTAAATTGTCCTTGAACATAAGAAAATGATTACCCATATTTTCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCCATTTCTGTTTTATCCTATT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTGTTACGATTCTGACAGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACCCATTTCTGTTTTATCCTATTAGTACAAGTCTCCTTTTATATTGAAACCGAACAGGGAGGGACTGGAACACTAACGAGGTGAACAAATCAACAAAAAAAATCGTCTGGATTTTCTCTACCAAAACCTATTTGTGTTGGACTAATACATCAGCGGTAGTGGAGGTCTGTCTCGTGGTTTTTGAGTGGTTTCTTTGAAAAATTGGAACGTTGTTTGTTGAGGTTTACTGTCAGAATCGTAACAAATTT</canonical_amplicon>
		<polymorphic_amplicon>ACCCATTTCTGTTTTATCCTATTAGTACAAGTCTCCTTTTATATTGAAACCGAACRGGGAGGGACTGGAACACTAACGAGGTGAACAAATCAACAAAAAAAATCGTCTGGATTTTCTCTACCAAAACCTATTTGTGTTGGACTAATACATCAGCGGTAGTGGAGGTCTGTCTCGTGGTTTTTGAGTGGTTTCTTTGAAAAATTGGAACGTTGTTTGTTGAGGTTTACTGTCAGAATCGTAACAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30260</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>762352</contig_pos>
        <strand>+</strand>
        <context>ACAAATCAAC[A/C]AAAAAAATCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGAAACCGAACAGGGAGGGACTGGAACACTAACGAGGTGAACAAATCAAC</left_flank>
        <right_flank>AAAAAAATCGTCTGGATTTTCTCTACCAAAACCTATTTGTGTTGGACTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTACTATAACTGTTCGAGCTTATTACATATTCTTTACATTGCCATCTTGGACGAAACACATTCAACGTCAAACAGTTCGCTTCATCCGGCACGTCTTGATTTTTAAGATCGATCTTTTCATAAAACATTCCAGAAGACGGACATCGTGGACCATATTCAAAGCAATCTCTGGGTTCCGACCAGACATCTACCAAAACTGGTTTCCTAAATCTCAACTCTCCTATTGGTGGTTTGGCATACGGGATGCCTAAAAATCCGTCCTTTCATTTCTCCCCCTAAATGACAAAAATAGAAAAGTTCAGAACCAAAAAACCTACATGTCGATAAAAATTTCCACGAACCGGACCACACGATGCGAAGAATACATTCGAATGGTGTTCCGGTTTGAGATGTGAGAGATGGCCACCCATTTCTGTTTTATCCTATTAGTACAAGTCTCCTTTTATATTGAAACCGAACAGGGAGGGACTGGAACACTAACGAGGTGAACAAATCAACAAAAAAAATCGTCTGGATTTTCTCTACCAAAACCTATTTGTGTTGGACTAATACATCAGCGGTAGTGGAGGTCTGTCTCGTGGTTTTTGAGTGGTTTCTTTGAAAAATTGGAACGTTGTTTGTTGAGGTTTACTGTCAGAATCGTAACAAATTTATTGAAAAGTACAAAATACAAAAGTTGGTGTTGAATTGTTGGTGTTGAATTTAACAAGTCAATTAGGATCTTCCATAAACCACGGTTTCCAGATTCTTGTTGTTCTTTCTCACTTCTTTCAGGTATTCCATTCTTTCCGGACAATACTCATCTCTCATATTGCCACGTGGATAACTAATTCGATAATGTCTCCGTTGGTGTTCCGGATTGTATCGTTCCCATTCTTGTGATCCAGTTTCATTTGGATTTCTGAAAAAAGTGGTTAAATTGTCCTTGAACATAAGAAAATGATTACCCATATTTTCCAAAATTCGAATAGATTTCAGTAATTTTATCAATCATCTTGA</canonical>
            <polymorphic>CCTACTATAACTGTTCGAGCTTATTACATATTCTTTACATTGCCATCTTGGACGAAACACATTCAACGTCAAACAGTTCGCTTCATCCGGCACGTCTTGATTTTTAAGATCGATCTTTTCATAAAACATTCCAGAAGACGGACATCGTGGACCATATTCAAAGCAATCTCTGGGTTCCGACCAGACATCTACCAAAACTGGTTTCCTAAATCTCAACTCTCCTATTGGTGGTTTGGCATACGGGATGCCTAAAAATCCGTCCTTTCATTTCTCCCCCTAAATGACAAAAATAGAAAAGTTCAGAACCAAAAAACCTACATGTCGATAAAAATTTCCACGAACCGGACCACACGATGCGAAGAATACATTCGAATGGTGTTCCGGTTTGAGATGTGAGAGATGGCCACCCATTTCTGTTTTATCCTATTAGTACAAGTCTCCTTTTATATTGAAACCGAACAGGGAGGGACTGGAACACTAACGAGGTGAACAAATCAACMAAAAAAATCGTCTGGATTTTCTCTACCAAAACCTATTTGTGTTGGACTAATACATCAGCGGTAGTGGAGGTCTGTCTCGTGGTTTTTGAGTGGTTTCTTTGAAAAATTGGAACGTTGTTTGTTGAGGTTTACTGTCAGAATCGTAACAAATTTATTGAAAAGTACAAAATACAAAAGTTGGTGTTGAATTGTTGGTGTTGAATTTAACAAGTCAATTAGGATCTTCCATAAACCACGGTTTCCAGATTCTTGTTGTTCTTTCTCACTTCTTTCAGGTATTCCATTCTTTCCGGACAATACTCATCTCTCATATTGCCACGTGGATAACTAATTCGATAATGTCTCCGTTGGTGTTCCGGATTGTATCGTTCCCATTCTTGTGATCCAGTTTCATTTGGATTTCTGAAAAAAGTGGTTAAATTGTCCTTGAACATAAGAAAATGATTACCCATATTTTCCAAAATTCGAATAGATTTCAGTAATTTTATCAATCATCTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCCATTTCTGTTTTATCCTATT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTGTTACGATTCTGACAGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACCCATTTCTGTTTTATCCTATTAGTACAAGTCTCCTTTTATATTGAAACCGAACAGGGAGGGACTGGAACACTAACGAGGTGAACAAATCAACAAAAAAAATCGTCTGGATTTTCTCTACCAAAACCTATTTGTGTTGGACTAATACATCAGCGGTAGTGGAGGTCTGTCTCGTGGTTTTTGAGTGGTTTCTTTGAAAAATTGGAACGTTGTTTGTTGAGGTTTACTGTCAGAATCGTAACAAATTT</canonical_amplicon>
		<polymorphic_amplicon>ACCCATTTCTGTTTTATCCTATTAGTACAAGTCTCCTTTTATATTGAAACCGAACAGGGAGGGACTGGAACACTAACGAGGTGAACAAATCAACMAAAAAAATCGTCTGGATTTTCTCTACCAAAACCTATTTGTGTTGGACTAATACATCAGCGGTAGTGGAGGTCTGTCTCGTGGTTTTTGAGTGGTTTCTTTGAAAAATTGGAACGTTGTTTGTTGAGGTTTACTGTCAGAATCGTAACAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30261</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>762368</contig_pos>
        <strand></strand>
        <context>AATCGTCTGG[A/C]TTTTCTCTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGGACTGGAACACTAACGAGGTGAACAAATCAACAAAAAAAATCGTCTGG</left_flank>
        <right_flank>TTTTCTCTACCAAAACCTATTTGTGTTGGACTAATACATCAGCGGTAGTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGCTTATTACATATTCTTTACATTGCCATCTTGGACGAAACACATTCAACGTCAAACAGTTCGCTTCATCCGGCACGTCTTGATTTTTAAGATCGATCTTTTCATAAAACATTCCAGAAGACGGACATCGTGGACCATATTCAAAGCAATCTCTGGGTTCCGACCAGACATCTACCAAAACTGGTTTCCTAAATCTCAACTCTCCTATTGGTGGTTTGGCATACGGGATGCCTAAAAATCCGTCCTTTCATTTCTCCCCCTAAATGACAAAAATAGAAAAGTTCAGAACCAAAAAACCTACATGTCGATAAAAATTTCCACGAACCGGACCACACGATGCGAAGAATACATTCGAATGGTGTTCCGGTTTGAGATGTGAGAGATGGCCACCCATTTCTGTTTTATCCTATTAGTACAAGTCTCCTTTTATATTGAAACCGAACAGGGAGGGACTGGAACACTAACGAGGTGAACAAATCAACAAAAAAAATCGTCTGGATTTTCTCTACCAAAACCTATTTGTGTTGGACTAATACATCAGCGGTAGTGGAGGTCTGTCTCGTGGTTTTTGAGTGGTTTCTTTGAAAAATTGGAACGTTGTTTGTTGAGGTTTACTGTCAGAATCGTAACAAATTTATTGAAAAGTACAAAATACAAAAGTTGGTGTTGAATTGTTGGTGTTGAATTTAACAAGTCAATTAGGATCTTCCATAAACCACGGTTTCCAGATTCTTGTTGTTCTTTCTCACTTCTTTCAGGTATTCCATTCTTTCCGGACAATACTCATCTCTCATATTGCCACGTGGATAACTAATTCGATAATGTCTCCGTTGGTGTTCCGGATTGTATCGTTCCCATTCTTGTGATCCAGTTTCATTTGGATTTCTGAAAAAAGTGGTTAAATTGTCCTTGAACATAAGAAAATGATTACCCATATTTTCCAAAATTCGAATAGATTTCAGTAATTTTATCAATCATCTTGATCTCATCATCTGTTGG</canonical>
            <polymorphic>GAGCTTATTACATATTCTTTACATTGCCATCTTGGACGAAACACATTCAACGTCAAACAGTTCGCTTCATCCGGCACGTCTTGATTTTTAAGATCGATCTTTTCATAAAACATTCCAGAAGACGGACATCGTGGACCATATTCAAAGCAATCTCTGGGTTCCGACCAGACATCTACCAAAACTGGTTTCCTAAATCTCAACTCTCCTATTGGTGGTTTGGCATACGGGATGCCTAAAAATCCGTCCTTTCATTTCTCCCCCTAAATGACAAAAATAGAAAAGTTCAGAACCAAAAAACCTACATGTCGATAAAAATTTCCACGAACCGGACCACACGATGCGAAGAATACATTCGAATGGTGTTCCGGTTTGAGATGTGAGAGATGGCCACCCATTTCTGTTTTATCCTATTAGTACAAGTCTCCTTTTATATTGAAACCGAACAGGGAGGGACTGGAACACTAACGAGGTGAACAAATCAACAAAAAAAATCGTCTGGMTTTTCTCTACCAAAACCTATTTGTGTTGGACTAATACATCAGCGGTAGTGGAGGTCTGTCTCGTGGTTTTTGAGTGGTTTCTTTGAAAAATTGGAACGTTGTTTGTTGAGGTTTACTGTCAGAATCGTAACAAATTTATTGAAAAGTACAAAATACAAAAGTTGGTGTTGAATTGTTGGTGTTGAATTTAACAAGTCAATTAGGATCTTCCATAAACCACGGTTTCCAGATTCTTGTTGTTCTTTCTCACTTCTTTCAGGTATTCCATTCTTTCCGGACAATACTCATCTCTCATATTGCCACGTGGATAACTAATTCGATAATGTCTCCGTTGGTGTTCCGGATTGTATCGTTCCCATTCTTGTGATCCAGTTTCATTTGGATTTCTGAAAAAAGTGGTTAAATTGTCCTTGAACATAAGAAAATGATTACCCATATTTTCCAAAATTCGAATAGATTTCAGTAATTTTATCAATCATCTTGATCTCATCATCTGTTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>381 230 140 80 66 48 35 20</canonical_bands>
                <polymorphic_bands>611 140 80 66 48 35 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCCATTTCTGTTTTATCCTATT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTGTTACGATTCTGACAGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACCCATTTCTGTTTTATCCTATTAGTACAAGTCTCCTTTTATATTGAAACCGAACAGGGAGGGACTGGAACACTAACGAGGTGAACAAATCAACAAAAAAAATCGTCTGGATTTTCTCTACCAAAACCTATTTGTGTTGGACTAATACATCAGCGGTAGTGGAGGTCTGTCTCGTGGTTTTTGAGTGGTTTCTTTGAAAAATTGGAACGTTGTTTGTTGAGGTTTACTGTCAGAATCGTAACAAATTT</canonical_amplicon>
		<polymorphic_amplicon>ACCCATTTCTGTTTTATCCTATTAGTACAAGTCTCCTTTTATATTGAAACCGAACAGGGAGGGACTGGAACACTAACGAGGTGAACAAATCAACAAAAAAAATCGTCTGGMTTTTCTCTACCAAAACCTATTTGTGTTGGACTAATACATCAGCGGTAGTGGAGGTCTGTCTCGTGGTTTTTGAGTGGTTTCTTTGAAAAATTGGAACGTTGTTTGTTGAGGTTTACTGTCAGAATCGTAACAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30262</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>765354</contig_pos>
        <strand>+</strand>
        <context>TGATTTCCAG[A/T]TTTTGAAGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCCATCCGGGTTACAATAATCGAATGAATACAAGAAAACATGATTTCCAG</left_flank>
        <right_flank>TTTTGAAGCAGCTTGAGCCGAATTTAGAATACCAACATTGAAAACTGCAT</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTTAGTACAAAAGCTGGAGGAACATTTATTTTGAAAATATCTGTATTTCTATACAACAATATATGTCAGTTAAATCGAAATTTTCTTTCTTCCAATTGTCCTCAACTTTTTCAATCGATTATTCAAAATATCATCTTCTATTCGGCTTGTTAGATAATCAATTTTGAAATAATATCCAGGCAATTCGATGGTATAGTTTTTCCACTTTCCGACGACATCATTCCCATTTGGATTCCTAAAAACCAAATTTTGGGTTGAGCATTGTTAATACCTAGCCACTAACCCGTAATTGGAAAAATTGGAAAACCAAGTTGCCATACTTTCCATCATTTGAAAATCGTTTTCAGTTGGTACAAACGTATCATATCCACCGCTCCCGAATATGTATCGAAAATCGTTTCCATGGCTGGATGCTTTAAAATCAAGAAGATTACCTAGAGGACCATAGCCATCCGGGTTACAATAATCGAATGAATACAAGAAAACATGATTTCCAGATTTTGAAGCAGCTTGAGCCGAATTTAGAATACCAACATTGAAAACTGCATCACCAAGGAACTGAAAACTATGACTGATATTGTTTAGACGTTTAAAGCAAACCTCAATAAATCTCTTCCTGACAGCTGCCACATCGGATTTGTCTATTCCTTCTGAATACCAATTCTCCAACTTTTCGTGAACGTCTTCTGGTTTCGGGACAACATCCAATTTGAACAATTTCTTCGATGAGGCTTCAATAGAGTCGCCGATTCGAGAATAAATTGGATCAGGAACAGCTGAATTTGAAGATGTAAAAATGAAATATATTGAAAACTCACCCATGATAAGTCCTTCAAACTCAGTTCTCCCAAAAATAAAATTTTTTTTGGGTGCATTTTTTCTCAATTCATCCAACGATTCTGTGAAGAAATCACCGTCCGCATTAGGTCCACATGACATAAATCCTGATGGGGAGAACTTGAAGGTACTCAATTTATTCAAAAGCTCAATGCTTTGCT</canonical>
            <polymorphic>TGTTTAGTACAAAAGCTGGAGGAACATTTATTTTGAAAATATCTGTATTTCTATACAACAATATATGTCAGTTAAATCGAAATTTTCTTTCTTCCAATTGTCCTCAACTTTTTCAATCGATTATTCAAAATATCATCTTCTATTCGGCTTGTTAGATAATCAATTTTGAAATAATATCCAGGCAATTCGATGGTATAGTTTTTCCACTTTCCGACGACATCATTCCCATTTGGATTCCTAAAAACCAAATTTTGGGTTGAGCATTGTTAATACCTAGCCACTAACCCGTAATTGGAAAAATTGGAAAACCAAGTTGCCATACTTTCCATCATTTGAAAATCGTTTTCAGTTGGTACAAACGTATCATATCCACCGCTCCCGAATATGTATCGAAAATCGTTTCCATGGCTGGATGCTTTAAAATCAAGAAGATTACCTAGAGGACCATAGCCATCCGGGTTACAATAATCGAATGAATACAAGAAAACATGATTTCCAGWTTTTGAAGCAGCTTGAGCCGAATTTAGAATACCAACATTGAAAACTGCATCACCAAGGAACTGAAAACTATGACTGATATTGTTTAGACGTTTAAAGCAAACCTCAATAAATCTCTTCCTGACAGCTGCCACATCGGATTTGTCTATTCCTTCTGAATACCAATTCTCCAACTTTTCGTGAACGTCTTCTGGTTTCGGGACAACATCCAATTTGAACAATTTCTTCGATGAGGCTTCAATAGAGTCGCCGATTCGAGAATAAATTGGATCAGGAACAGCTGAATTTGAAGATGTAAAAATGAAATATATTGAAAACTCACCCATGATAAGTCCTTCAAACTCAGTTCTCCCAAAAATAAAATTTTTTTTGGGTGCATTTTTTCTCAATTCATCCAACGATTCTGTGAAGAAATCACCGTCCGCATTAGGTCCACATGACATAAATCCTGATGGGGAGAACTTGAAGGTACTCAATTTATTCAAAAGCTCAATGCTTTGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>378 176 122 71 59 58 54 47 19 16</canonical_bands>
                <polymorphic_bands>378 193 176 59 58 54 47 19 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATGCTTTAAAATCAAGAAGAT</pcr_primer_p1>
		<pcr_primer_p2>TGGTATTCAGAAGGAATAGACAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGATGCTTTAAAATCAAGAAGATTACCTAGAGGACCATAGCCATCCGGGTTACAATAATCGAATGAATACAAGAAAACATGATTTCCAGATTTTGAAGCAGCTTGAGCCGAATTTAGAATACCAACATTGAAAACTGCATCACCAAGGAACTGAAAACTATGACTGATATTGTTTAGACGTTTAAAGCAAACCTCAATAAATCTCTTCCTGACAGCTGCCACATCGGATTTGTCTATTCCTTCTGAATACCA</canonical_amplicon>
		<polymorphic_amplicon>GGATGCTTTAAAATCAAGAAGATTACCTAGAGGACCATAGCCATCCGGGTTACAATAATCGAATGAATACAAGAAAACATGATTTCCAGWTTTTGAAGCAGCTTGAGCCGAATTTAGAATACCAACATTGAAAACTGCATCACCAAGGAACTGAAAACTATGACTGATATTGTTTAGACGTTTAAAGCAAACCTCAATAAATCTCTTCCTGACAGCTGCCACATCGGATTTGTCTATTCCTTCTGAATACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30263</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>765716</contig_pos>
        <strand>+</strand>
        <context>AAAAATAAAA[G/T]TTTTTTTGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAACTCACCCATGATAAGTCCTTCAAACTCAGTTCTCCCAAAAATAAAA</left_flank>
        <right_flank>TTTTTTTGGGTGCATTTTTTCTCAATTCATCCAACGATTCTGTGAAGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCATATCCACCGCTCCCGAATATGTATCGAAAATCGTTTCCATGGCTGGATGCTTTAAAATCAAGAAGATTACCTAGAGGACCATAGCCATCCGGGTTACAATAATCGAATGAATACAAGAAAACATGATTTCCAGATTTTGAAGCAGCTTGAGCCGAATTTAGAATACCAACATTGAAAACTGCATCACCAAGGAACTGAAAACTATGACTGATATTGTTTAGACGTTTAAAGCAAACCTCAATAAATCTCTTCCTGACAGCTGCCACATCGGATTTGTCTATTCCTTCTGAATACCAATTCTCCAACTTTTCGTGAACGTCTTCTGGTTTCGGGACAACATCCAATTTGAACAATTTCTTCGATGAGGCTTCAATAGAGTCGCCGATTCGAGAATAAATTGGATCAGGAACAGCTGAATTTGAAGATGTAAAAATGAAATATATTGAAAACTCACCCATGATAAGTCCTTCAAACTCAGTTCTCCCAAAAATAAAATTTTTTTTGGGTGCATTTTTTCTCAATTCATCCAACGATTCTGTGAAGAAATCACCGTCCGCATTAGGTCCACATGACATAAATCCTGATGGGGAGAACTTGAAGGTACTCAATTTATTCAAAAGCTCAATGCTTTGCTCTTGATACCATTTCATTAGATTAGAAGAGTCTGAAACCTATTTGTAGTTAAGAACGACTATAAAGTTAAGCTTTCACCAGTTTGTGAACATCCATTTTCTATCGCAAACTCTTTGAAAATAAGTGCTTGATTCGCTTTGGATCGACATGCCATTTCACAATCAGCGCTTCCAGACATTGCTATGCATTTTTGGAAGAGGTCTGAATTTCAACTAAAATGTGAATATTGAAACACACCGATTACCTCTAGAACGAGTACTGAGGGTCAATAAATCAGCACAAACTCCTCCAGCACTACATCCGAAAACTGTAACGTTGTTGGGATCACCTCCAAATGATCTTATATGTTTCTGAACCCATTTT</canonical>
            <polymorphic>ATCATATCCACCGCTCCCGAATATGTATCGAAAATCGTTTCCATGGCTGGATGCTTTAAAATCAAGAAGATTACCTAGAGGACCATAGCCATCCGGGTTACAATAATCGAATGAATACAAGAAAACATGATTTCCAGATTTTGAAGCAGCTTGAGCCGAATTTAGAATACCAACATTGAAAACTGCATCACCAAGGAACTGAAAACTATGACTGATATTGTTTAGACGTTTAAAGCAAACCTCAATAAATCTCTTCCTGACAGCTGCCACATCGGATTTGTCTATTCCTTCTGAATACCAATTCTCCAACTTTTCGTGAACGTCTTCTGGTTTCGGGACAACATCCAATTTGAACAATTTCTTCGATGAGGCTTCAATAGAGTCGCCGATTCGAGAATAAATTGGATCAGGAACAGCTGAATTTGAAGATGTAAAAATGAAATATATTGAAAACTCACCCATGATAAGTCCTTCAAACTCAGTTCTCCCAAAAATAAAAKTTTTTTTGGGTGCATTTTTTCTCAATTCATCCAACGATTCTGTGAAGAAATCACCGTCCGCATTAGGTCCACATGACATAAATCCTGATGGGGAGAACTTGAAGGTACTCAATTTATTCAAAAGCTCAATGCTTTGCTCTTGATACCATTTCATTAGATTAGAAGAGTCTGAAACCTATTTGTAGTTAAGAACGACTATAAAGTTAAGCTTTCACCAGTTTGTGAACATCCATTTTCTATCGCAAACTCTTTGAAAATAAGTGCTTGATTCGCTTTGGATCGACATGCCATTTCACAATCAGCGCTTCCAGACATTGCTATGCATTTTTGGAAGAGGTCTGAATTTCAACTAAAATGTGAATATTGAAACACACCGATTACCTCTAGAACGAGTACTGAGGGTCAATAAATCAGCACAAACTCCTCCAGCACTACATCCGAAAACTGTAACGTTGTTGGGATCACCTCCAAATGATCTTATATGTTTCTGAACCCATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>344 261 159 158 78</canonical_bands>
                <polymorphic_bands>422 261 159 158</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>231 159 158 141 87 78 47 44 26 20 9</canonical_bands>
                <polymorphic_bands>231 159 158 141 104 87 47 44 20 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAGCTGAATTTGAAGATGTAA</pcr_primer_p1>
		<pcr_primer_p2>TCTAATGAAATGGTATCAAGAGC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AACAGCTGAATTTGAAGATGTAAAAATGAAATATATTGAAAACTCACCCATGATAAGTCCTTCAAACTCAGTTCTCCCAAAAATAAAATTTTTTTTGGGTGCATTTTTTCTCAATTCATCCAACGATTCTGTGAAGAAATCACCGTCCGCATTAGGTCCACATGACATAAATCCTGATGGGGAGAACTTGAAGGTACTCAATTTATTCAAAAGCTCAATGCTTTGCTCTTGATACCATTTCATTAGA</canonical_amplicon>
		<polymorphic_amplicon>AACAGCTGAATTTGAAGATGTAAAAATGAAATATATTGAAAACTCACCCATGATAAGTCCTTCAAACTCAGTTCTCCCAAAAATAAAAKTTTTTTTGGGTGCATTTTTTCTCAATTCATCCAACGATTCTGTGAAGAAATCACCGTCCGCATTAGGTCCACATGACATAAATCCTGATGGGGAGAACTTGAAGGTACTCAATTTATTCAAAAGCTCAATGCTTTGCTCTTGATACCATTTCATTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30264</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>775107</contig_pos>
        <strand>+</strand>
        <context>TCTATGTTTC[C/T]TCTTCTATAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACAAAAAAAAACAAAAAAAACCCCCCCCCCCCTAATTTTTCTATGTTTC</left_flank>
        <right_flank>TCTTCTATAAATGCAATCTCATGGTAGATACATGATGGAGGACCTCTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAAAAATGAAGAATCAGGTGTAGACTTTCAGAAAGAAGCATTATCTGTTTTGAAATGAATTGCCGAAGGTCCCACAATGACAATTATCGTAAAAATTTTAGACCACTGTAGTTGTCGTTGTGGACCTTCGGCCACGGTCACCGCCGTTCTCTTCCACAGCCCCAACACGTGCCAATAGAAAGCGAAAAATAGCAATAACAAGAGATAAAGCTTATAGGTGTTTGGCTAATTCCTCGATTACAGTAATCCATCTATATCTTCTTTCTCCTTCTTCTTTCCCCTTCCATGTGTTTTTTGAGGAAAATCTCACATGTTTTGGTTTCTAGAACAGTCTTTTTCTTCTTTTCTCTCGCCCCCTCACTGATCACACTCGCCCCTTGAATTCTCAGTCAAAAAAAACAGAATGGGAAACATTATGTTGATTCTTCCCCTTGTTTTCTCCTCACATACAAAAAAAAACAAAAAAAACCCCCCCCCCCCTAATTTTTCTATGTTTCTTCTTCTATAAATGCAATCTCATGGTAGATACATGATGGAGGACCTCTTCTACCAATTCGTGTCTCCAAAATAAAGATGCAGTTGTATTACTCATTGTCAATCTTCTAAGCCTCTCTTTCTCTTTGTATATCTTCAAGTCTGAAAAATGAAATTTGAGATTTCACAATATCCCAGCTTTTTTTCTCTTCTCTTCTCCTGGTTTCGCTTCGTTCACCCGTAGTTTGTGGCTTTCTTTTTTTCAACGGCGCGAAGAAATGGGCAAAAAAGAGAAGAAGCCGAAGCACGTCTTCCATCTACATACGCATACACACTCGTCGACGTCTTCTGCCCATATAATCCTTGTGCTACAGCCTCTGCCGACGATGGCTGCTCCGTCGAGCCCGAAAGCACCCACTGCTCTTTTCTTTTTCTTCTTCTTCTTGGTACTCTCAGTTTTTCGCGCATGCCCACTTTTTTTTCTTTTTCTCGTTTCTTGTGTCCTTCCTCTCATTCTTCGGGCT</canonical>
            <polymorphic>ATAAAAAATGAAGAATCAGGTGTAGACTTTCAGAAAGAAGCATTATCTGTTTTGAAATGAATTGCCGAAGGTCCCACAATGACAATTATCGTAAAAATTTTAGACCACTGTAGTTGTCGTTGTGGACCTTCGGCCACGGTCACCGCCGTTCTCTTCCACAGCCCCAACACGTGCCAATAGAAAGCGAAAAATAGCAATAACAAGAGATAAAGCTTATAGGTGTTTGGCTAATTCCTCGATTACAGTAATCCATCTATATCTTCTTTCTCCTTCTTCTTTCCCCTTCCATGTGTTTTTTGAGGAAAATCTCACATGTTTTGGTTTCTAGAACAGTCTTTTTCTTCTTTTCTCTCGCCCCCTCACTGATCACACTCGCCCCTTGAATTCTCAGTCAAAAAAAACAGAATGGGAAACATTATGTTGATTCTTCCCCTTGTTTTCTCCTCACATACAAAAAAAAACAAAAAAAACCCCCCCCCCCCTAATTTTTCTATGTTTCYTCTTCTATAAATGCAATCTCATGGTAGATACATGATGGAGGACCTCTTCTACCAATTCGTGTCTCCAAAATAAAGATGCAGTTGTATTACTCATTGTCAATCTTCTAAGCCTCTCTTTCTCTTTGTATATCTTCAAGTCTGAAAAATGAAATTTGAGATTTCACAATATCCCAGCTTTTTTTCTCTTCTCTTCTCCTGGTTTCGCTTCGTTCACCCGTAGTTTGTGGCTTTCTTTTTTTCAACGGCGCGAAGAAATGGGCAAAAAAGAGAAGAAGCCGAAGCACGTCTTCCATCTACATACGCATACACACTCGTCGACGTCTTCTGCCCATATAATCCTTGTGCTACAGCCTCTGCCGACGATGGCTGCTCCGTCGAGCCCGAAAGCACCCACTGCTCTTTTCTTTTTCTTCTTCTTCTTGGTACTCTCAGTTTTTCGCGCATGCCCACTTTTTTTTCTTTTTCTCGTTTCTTGTGTCCTTCCTCTCATTCTTCGGGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGGTTTCTAGAACAGTCTTT</pcr_primer_p1>
		<pcr_primer_p2>GAGACACGAATTGGTAGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTGGTTTCTAGAACAGTCTTTTTCTTCTTTTCTCTCGCCCCCTCACTGATCACACTCGCCCCTTGAATTCTCAGTCAAAAAAAACAGAATGGGAAACATTATGTTGATTCTTCCCCTTGTTTTCTCCTCACATACAAAAAAAAACAAAAAAAACCCCCCCCCCCCTAATTTTTCTATGTTTCTTCTTCTATAAATGCAATCTCATGGTAGATACATGATGGAGGACCTCTTCTACCAATTCGTGTCTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGGTTTCTAGAACAGTCTTTTTCTTCTTTTCTCTCGCCCCCTCACTGATCACACTCGCCCCTTGAATTCTCAGTCAAAAAAAACAGAATGGGAAACATTATGTTGATTCTTCCCCTTGTTTTCTCCTCACATACAAAAAAAAACAAAAAAAACCCCCCCCCCCCTAATTTTTCTATGTTTCYTCTTCTATAAATGCAATCTCATGGTAGATACATGATGGAGGACCTCTTCTACCAATTCGTGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30265</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>806401</contig_pos>
        <strand>+</strand>
        <context>CCAGAGCTGG[A/C]AAACGGCTAC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGAGCTCGTTTACATGGCATGCATCAAGATTAAAAACGATCCAGAGCTGG</left_flank>
        <right_flank>AAACGGCTACAATGCTATCGGATTCTCACAAGGTGCACAATTTCTACGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTCATTCCACTAGTTGTTTTCTCAATCAATAATCGCCCCACTCTTTCTCTTATCTTATCATCTGAGCCCCCAACAGGTGACCTCTGTCCAGTCAATCTGATCCCATTTTCTTCTTCAACCCCATTCACTCTTCTACCGAATGGCTAGTACACTTCTTCCCTTTCTACTGATATTCCCTCTAGTATTTGTCACTTCAACAGTGGCAGATGTTCGAGCTGGAAATGGAACGAAACAGGTTCCAGTTGTTATGTGGCATGGAATGGGTTTGCTAATATTTGATTTTTTGAATCAATTTATTTTTCAAGGTGACTGCTGTTGTAATCCATTATCCATGGGATCGGTGAAAAAACTGATTGAGCAAGAAGTTCCAGGAGTGTATGTTCACAGTCTAGAATTGGGTGGAAGTATCACAAAAGATATCGAGCACGGATTTTTTGCAAATGTCAATGAGCTCGTTTACATGGCATGCATCAAGATTAAAAACGATCCAGAGCTGGCAAACGGCTACAATGCTATCGGATTCTCACAAGGTGCACAATTTCTACGAGCCGTTGCTCAAAGATGTCCACATCCTCCAATGAAGAACTTTGTATCAATCGGGGGTCAACAACAAGGAGTTTTCGGAGCCCCGTATTGCATCGGGGATAACGTAATGTGCAACAGTGTGAGACGTCTGATTGATATGGGAGCATATCTTCCATTTGTTCAGAAAAGGTATCCAACGATTGATTTGAATGATGAAATTTGATCTATCAAATTTTCTAGGGTTGTCCAAGCGCAGTATTGGCACGATCCAAACCAGCCAGATGAGTACAAAAAGAGATCAATCTTTCTTGCCGACATTAACAACGAAAATGTAAGAAATTGATAAGATAACAACATTCGATAGATCAAAGAATCCATTCGTTCAGAAAAACAATCCGACCTACAAACGAAATCTTCTGAATTTGAAAAATATATTACTCGTGAAGTTCAATCAAGATCACATGGTTGTACCA</canonical>
            <polymorphic>TTCTCATTCCACTAGTTGTTTTCTCAATCAATAATCGCCCCACTCTTTCTCTTATCTTATCATCTGAGCCCCCAACAGGTGACCTCTGTCCAGTCAATCTGATCCCATTTTCTTCTTCAACCCCATTCACTCTTCTACCGAATGGCTAGTACACTTCTTCCCTTTCTACTGATATTCCCTCTAGTATTTGTCACTTCAACAGTGGCAGATGTTCGAGCTGGAAATGGAACGAAACAGGTTCCAGTTGTTATGTGGCATGGAATGGGTTTGCTAATATTTGATTTTTTGAATCAATTTATTTTTCAAGGTGACTGCTGTTGTAATCCATTATCCATGGGATCGGTGAAAAAACTGATTGAGCAAGAAGTTCCAGGAGTGTATGTTCACAGTCTAGAATTGGGTGGAAGTATCACAAAAGATATCGAGCACGGATTTTTTGCAAATGTCAATGAGCTCGTTTACATGGCATGCATCAAGATTAAAAACGATCCAGAGCTGGMAAACGGCTACAATGCTATCGGATTCTCACAAGGTGCACAATTTCTACGAGCCGTTGCTCAAAGATGTCCACATCCTCCAATGAAGAACTTTGTATCAATCGGGGGTCAACAACAAGGAGTTTTCGGAGCCCCGTATTGCATCGGGGATAACGTAATGTGCAACAGTGTGAGACGTCTGATTGATATGGGAGCATATCTTCCATTTGTTCAGAAAAGGTATCCAACGATTGATTTGAATGATGAAATTTGATCTATCAAATTTTCTAGGGTTGTCCAAGCGCAGTATTGGCACGATCCAAACCAGCCAGATGAGTACAAAAAGAGATCAATCTTTCTTGCCGACATTAACAACGAAAATGTAAGAAATTGATAAGATAACAACATTCGATAGATCAAAGAATCCATTCGTTCAGAAAAACAATCCGACCTACAAACGAAATCTTCTGAATTTGAAAAATATATTACTCGTGAAGTTCAATCAAGATCACATGGTTGTACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>503 468 29</canonical_bands>
                <polymorphic_bands>532 468</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGCAAATGTCAATGAG</pcr_primer_p1>
		<pcr_primer_p2>ATATCAATCAGACGTCTCACACT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGCAAATGTCAATGAGCTCGTTTACATGGCATGCATCAAGATTAAAAACGATCCAGAGCTGGCAAACGGCTACAATGCTATCGGATTCTCACAAGGTGCACAATTTCTACGAGCCGTTGCTCAAAGATGTCCACATCCTCCAATGAAGAACTTTGTATCAATCGGGGGTCAACAACAAGGAGTTTTCGGAGCCCCGTATTGCATCGGGGATAACGTAATGTGCAACAGTGTGAGACGTCTGATTGATAT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGCAAATGTCAATGAGCTCGTTTACATGGCATGCATCAAGATTAAAAACGATCCAGAGCTGGMAAACGGCTACAATGCTATCGGATTCTCACAAGGTGCACAATTTCTACGAGCCGTTGCTCAAAGATGTCCACATCCTCCAATGAAGAACTTTGTATCAATCGGGGGTCAACAACAAGGAGTTTTCGGAGCCCCGTATTGCATCGGGGATAACGTAATGTGCAACAGTGTGAGACGTCTGATTGATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30267</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>896134</contig_pos>
        <strand></strand>
        <context>TTATTCAGTT[C/A]TCTAATATCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CAGCGCCTGATTGATAGTGTTTTCAATTTTGTTTTCAATTTTATTCAGTT</left_flank>
        <right_flank>TCTAATATCTTCCGAAGTTCTCCTCTATACAACTCTCCGAATATTCCAGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCGTGCGTTTTCAGTCAATTTTCACCCAATCAAATGTTATGCTTGTTCCGGGAAAAATAACAGAAACTCGACGAAAAACAATAAAAACGAGAAAATTATATTTTTAGGTTACGGTAGTTGTCGTTGTGGGCATCACGGCCACCGGCTTTTCTCTTCCACAGCTCCATTTTTTGTACCAGGATAATAACGAGAAACGAATTTTCCGGTTTTCCGCAATTTTGAAAATTTCGAGTTATCCCATTCAGCAAAGAATCATATGATCATGTCTAGTCATTGATCCTTTCCTCTTTTTTCCTCGTTTTTCGACACCCAACCGAATCCACGTGACAGAATTGGAATCCAAAACGCCTCCTTTTTTCCAGCCTCCGCCTTTTTTCTTCGTCCCCCTTCTCCCTGTCCTCCGTATCAGTAAACCATCATAAAAATACAGTGGCCACCAGCATGTGTCAGCGCCTGATTGATAGTGTTTTCAATTTTGTTTTCAATTTTATTCAGTTCTCTAATATCTTCCGAAGTTCTCCTCTATACAACTCTCCGAATATTCCAGAATGCGTCGAAATTCTTTGACCAACATGCTCGGCGAGTTTGTCGGATTCAACCGATCGCCTGGAGCACGACTCTCTTCCCTCTCGAATCAAGAACTCAATCATGCAGTGAAGGAAGAGAAAAGAACATTCCTGGTAAGAGTCTCATTCATCTGAAACCATGTCTCATATCTACTTCAGGAACAAGAAGCCGTCGTTCGTCCGGAAAAGAGAAAGCCACGTCAGAGATATTTGTCAGAAGGAGATATCCGAGTGGTTTCATCACATCCAGTTTCAGTCAGCGAATTGAAAAGAGGACTTTCTGGTGGACAGCAGACAACTGTGGTAAGTACTTGGGTGAGAAGTTAGATGAAATTTTTTGATTTTCAGAAAGTTTCTGCGAACCCTGCTGGTGGTGATGAAGCTTCAGTTGATGTGGTCTTAAGATCAAAGAATCCAAAACGAAAGGATCGA</canonical>
            <polymorphic>GTTCGTGCGTTTTCAGTCAATTTTCACCCAATCAAATGTTATGCTTGTTCCGGGAAAAATAACAGAAACTCGACGAAAAACAATAAAAACGAGAAAATTATATTTTTAGGTTACGGTAGTTGTCGTTGTGGGCATCACGGCCACCGGCTTTTCTCTTCCACAGCTCCATTTTTTGTACCAGGATAATAACGAGAAACGAATTTTCCGGTTTTCCGCAATTTTGAAAATTTCGAGTTATCCCATTCAGCAAAGAATCATATGATCATGTCTAGTCATTGATCCTTTCCTCTTTTTTCCTCGTTTTTCGACACCCAACCGAATCCACGTGACAGAATTGGAATCCAAAACGCCTCCTTTTTTCCAGCCTCCGCCTTTTTTCTTCGTCCCCCTTCTCCCTGTCCTCCGTATCAGTAAACCATCATAAAAATACAGTGGCCACCAGCATGTGTCAGCGCCTGATTGATAGTGTTTTCAATTTTGTTTTCAATTTTATTCAGTTMTCTAATATCTTCCGAAGTTCTCCTCTATACAACTCTCCGAATATTCCAGAATGCGTCGAAATTCTTTGACCAACATGCTCGGCGAGTTTGTCGGATTCAACCGATCGCCTGGAGCACGACTCTCTTCCCTCTCGAATCAAGAACTCAATCATGCAGTGAAGGAAGAGAAAAGAACATTCCTGGTAAGAGTCTCATTCATCTGAAACCATGTCTCATATCTACTTCAGGAACAAGAAGCCGTCGTTCGTCCGGAAAAGAGAAAGCCACGTCAGAGATATTTGTCAGAAGGAGATATCCGAGTGGTTTCATCACATCCAGTTTCAGTCAGCGAATTGAAAAGAGGACTTTCTGGTGGACAGCAGACAACTGTGGTAAGTACTTGGGTGAGAAGTTAGATGAAATTTTTTGATTTTCAGAAAGTTTCTGCGAACCCTGCTGGTGGTGATGAAGCTTCAGTTGATGTGGTCTTAAGATCAAAGAATCCAAAACGAAAGGATCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACCATCATAAAAATACAGTGG</pcr_primer_p1>
		<pcr_primer_p2>CTTCACTGCATGATTGAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAACCATCATAAAAATACAGTGGCCACCAGCATGTGTCAGCGCCTGATTGATAGTGTTTTCAATTTTGTTTTCAATTTTATTCAGTTCTCTAATATCTTCCGAAGTTCTCCTCTATACAACTCTCCGAATATTCCAGAATGCGTCGAAATTCTTTGACCAACATGCTCGGCGAGTTTGTCGGATTCAACCGATCGCCTGGAGCACGACTCTCTTCCCTCTCGAATCAAGAACTCAATCATGCAGTGAAG</canonical_amplicon>
		<polymorphic_amplicon>AAACCATCATAAAAATACAGTGGCCACCAGCATGTGTCAGCGCCTGATTGATAGTGTTTTCAATTTTGTTTTCAATTTTATTCAGTTMTCTAATATCTTCCGAAGTTCTCCTCTATACAACTCTCCGAATATTCCAGAATGCGTCGAAATTCTTTGACCAACATGCTCGGCGAGTTTGTCGGATTCAACCGATCGCCTGGAGCACGACTCTCTTCCCTCTCGAATCAAGAACTCAATCATGCAGTGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30268</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>896176</contig_pos>
        <strand></strand>
        <context>ACTCTCCGAA[T/C]ATTCCAGAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTCAGTTCTCTAATATCTTCCGAAGTTCTCCTCTATACAACTCTCCGAA</left_flank>
        <right_flank>ATTCCAGAATGCGTCGAAATTCTTTGACCAACATGCTCGGCGAGTTTGTC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTTGTTCCGGGAAAAATAACAGAAACTCGACGAAAAACAATAAAAACGAGAAAATTATATTTTTAGGTTACGGTAGTTGTCGTTGTGGGCATCACGGCCACCGGCTTTTCTCTTCCACAGCTCCATTTTTTGTACCAGGATAATAACGAGAAACGAATTTTCCGGTTTTCCGCAATTTTGAAAATTTCGAGTTATCCCATTCAGCAAAGAATCATATGATCATGTCTAGTCATTGATCCTTTCCTCTTTTTTCCTCGTTTTTCGACACCCAACCGAATCCACGTGACAGAATTGGAATCCAAAACGCCTCCTTTTTTCCAGCCTCCGCCTTTTTTCTTCGTCCCCCTTCTCCCTGTCCTCCGTATCAGTAAACCATCATAAAAATACAGTGGCCACCAGCATGTGTCAGCGCCTGATTGATAGTGTTTTCAATTTTGTTTTCAATTTTATTCAGTTCTCTAATATCTTCCGAAGTTCTCCTCTATACAACTCTCCGAATATTCCAGAATGCGTCGAAATTCTTTGACCAACATGCTCGGCGAGTTTGTCGGATTCAACCGATCGCCTGGAGCACGACTCTCTTCCCTCTCGAATCAAGAACTCAATCATGCAGTGAAGGAAGAGAAAAGAACATTCCTGGTAAGAGTCTCATTCATCTGAAACCATGTCTCATATCTACTTCAGGAACAAGAAGCCGTCGTTCGTCCGGAAAAGAGAAAGCCACGTCAGAGATATTTGTCAGAAGGAGATATCCGAGTGGTTTCATCACATCCAGTTTCAGTCAGCGAATTGAAAAGAGGACTTTCTGGTGGACAGCAGACAACTGTGGTAAGTACTTGGGTGAGAAGTTAGATGAAATTTTTTGATTTTCAGAAAGTTTCTGCGAACCCTGCTGGTGGTGATGAAGCTTCAGTTGATGTGGTCTTAAGATCAAAGAATCCAAAACGAAAGGATCGACCAACGAGCTTGATTGAGAGAATCCGGAGAAAGATTAGCTAC</canonical>
            <polymorphic>GCTTGTTCCGGGAAAAATAACAGAAACTCGACGAAAAACAATAAAAACGAGAAAATTATATTTTTAGGTTACGGTAGTTGTCGTTGTGGGCATCACGGCCACCGGCTTTTCTCTTCCACAGCTCCATTTTTTGTACCAGGATAATAACGAGAAACGAATTTTCCGGTTTTCCGCAATTTTGAAAATTTCGAGTTATCCCATTCAGCAAAGAATCATATGATCATGTCTAGTCATTGATCCTTTCCTCTTTTTTCCTCGTTTTTCGACACCCAACCGAATCCACGTGACAGAATTGGAATCCAAAACGCCTCCTTTTTTCCAGCCTCCGCCTTTTTTCTTCGTCCCCCTTCTCCCTGTCCTCCGTATCAGTAAACCATCATAAAAATACAGTGGCCACCAGCATGTGTCAGCGCCTGATTGATAGTGTTTTCAATTTTGTTTTCAATTTTATTCAGTTCTCTAATATCTTCCGAAGTTCTCCTCTATACAACTCTCCGAAYATTCCAGAATGCGTCGAAATTCTTTGACCAACATGCTCGGCGAGTTTGTCGGATTCAACCGATCGCCTGGAGCACGACTCTCTTCCCTCTCGAATCAAGAACTCAATCATGCAGTGAAGGAAGAGAAAAGAACATTCCTGGTAAGAGTCTCATTCATCTGAAACCATGTCTCATATCTACTTCAGGAACAAGAAGCCGTCGTTCGTCCGGAAAAGAGAAAGCCACGTCAGAGATATTTGTCAGAAGGAGATATCCGAGTGGTTTCATCACATCCAGTTTCAGTCAGCGAATTGAAAAGAGGACTTTCTGGTGGACAGCAGACAACTGTGGTAAGTACTTGGGTGAGAAGTTAGATGAAATTTTTTGATTTTCAGAAAGTTTCTGCGAACCCTGCTGGTGGTGATGAAGCTTCAGTTGATGTGGTCTTAAGATCAAAGAATCCAAAACGAAAGGATCGACCAACGAGCTTGATTGAGAGAATCCGGAGAAAGATTAGCTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGATTGATAGTGTTTTCAATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCAGATGAATGAGACTCTTACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTGATTGATAGTGTTTTCAATTTTGTTTTCAATTTTATTCAGTTCTCTAATATCTTCCGAAGTTCTCCTCTATACAACTCTCCGAATATTCCAGAATGCGTCGAAATTCTTTGACCAACATGCTCGGCGAGTTTGTCGGATTCAACCGATCGCCTGGAGCACGACTCTCTTCCCTCTCGAATCAAGAACTCAATCATGCAGTGAAGGAAGAGAAAAGAACATTCCTGGTAAGAGTCTCATTCATCTGAA</canonical_amplicon>
		<polymorphic_amplicon>CTGATTGATAGTGTTTTCAATTTTGTTTTCAATTTTATTCAGTTCTCTAATATCTTCCGAAGTTCTCCTCTATACAACTCTCCGAAYATTCCAGAATGCGTCGAAATTCTTTGACCAACATGCTCGGCGAGTTTGTCGGATTCAACCGATCGCCTGGAGCACGACTCTCTTCCCTCTCGAATCAAGAACTCAATCATGCAGTGAAGGAAGAGAAAAGAACATTCCTGGTAAGAGTCTCATTCATCTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30269</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>982491</contig_pos>
        <strand>+</strand>
        <context>AGCTCTTCGA[C/T]TTTTTTTGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATTAGACTTGTTGGTCCAAAAATCGCATCTCGGTATCCAGCTCTTCGA</left_flank>
        <right_flank>TTTTTTTGGATGGTTCCCAATCTCCAGTTACAATTTGATGCATAGATGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTAGGTTTATGCTTCAAGCAAGGCGAGTTTCCATCATCCAAACGAAACGTTTCTGGACTCTCATACATGCTGTACACACATCGTAGTCGATTCCGATCGTTTTGTTTTGTGAATTCGTGGGGATAAAGTTTGGGATCATAATAGGGCAGTGGGCCTCCATAGGGAGCTGGTGCACAGTCGCAGGATTGAGATTTCCACATAGTTGCCCAATCCGGATGCCATGAATACATGTGCTGGACTGCATCAAAACCGTCGAGCATTCCTGAAAACCATTCTCAATACTCTCTAACTTGAAAGATCTTTCAACTTACCTTTACAACTGAGAGTTCTTTCAGATCCAACAGGAACTTTGAAATATTTACAAAACCATTTGAATGCCTTGATTCTTCTTGATTCTCCGGGACCTCCTGGTTCATCTGGATCCTCACCTCCGCACTCGTTATTGATTATTAGACTTGTTGGTCCAAAAATCGCATCTCGGTATCCAGCTCTTCGATTTTTTTTGGATGGTTCCCAATCTCCAGTTACAATTTGATGCATAGATGGTTTCGGGGGTTGAGGTGTCATATAAAACCAAAGAGAAGCCATCATAGCCAATGGAGGATCCATTTTTGTCATTACAAGATTTGGATTCTCTAGCAAGTCGACTTTGACACCTTTTGTGAGTAGAAACTGTTGAAAAAGACCGTAGTTGTAGTTCCATGAGAGTTGAAGAGCACCTCGTCCAAAATAACATCCTTTGTGATAATCTTGGTCCGCATGAGATTCGATATCAGAATTACATGGATACCAGAAATCCAACATTGGATCACTCTTACAGTATCTTCCCTCTTCCACGCAGCGTTTTCCGTCGGCTGGTGAGAATCCAGGAGATGTCGGCGAAAGGAACGAAGAGTTTGGTCCTCGTTCAAACCAATTATAGAATCCACCTCGATAGAAACATTCATGAGCTTGTTCCAGGGTTAGGTCGGTGTTGCTGGAAAAATGAACAATTTTC</canonical>
            <polymorphic>ATTTTAGGTTTATGCTTCAAGCAAGGCGAGTTTCCATCATCCAAACGAAACGTTTCTGGACTCTCATACATGCTGTACACACATCGTAGTCGATTCCGATCGTTTTGTTTTGTGAATTCGTGGGGATAAAGTTTGGGATCATAATAGGGCAGTGGGCCTCCATAGGGAGCTGGTGCACAGTCGCAGGATTGAGATTTCCACATAGTTGCCCAATCCGGATGCCATGAATACATGTGCTGGACTGCATCAAAACCGTCGAGCATTCCTGAAAACCATTCTCAATACTCTCTAACTTGAAAGATCTTTCAACTTACCTTTACAACTGAGAGTTCTTTCAGATCCAACAGGAACTTTGAAATATTTACAAAACCATTTGAATGCCTTGATTCTTCTTGATTCTCCGGGACCTCCTGGTTCATCTGGATCCTCACCTCCGCACTCGTTATTGATTATTAGACTTGTTGGTCCAAAAATCGCATCTCGGTATCCAGCTCTTCGAYTTTTTTTGGATGGTTCCCAATCTCCAGTTACAATTTGATGCATAGATGGTTTCGGGGGTTGAGGTGTCATATAAAACCAAAGAGAAGCCATCATAGCCAATGGAGGATCCATTTTTGTCATTACAAGATTTGGATTCTCTAGCAAGTCGACTTTGACACCTTTTGTGAGTAGAAACTGTTGAAAAAGACCGTAGTTGTAGTTCCATGAGAGTTGAAGAGCACCTCGTCCAAAATAACATCCTTTGTGATAATCTTGGTCCGCATGAGATTCGATATCAGAATTACATGGATACCAGAAATCCAACATTGGATCACTCTTACAGTATCTTCCCTCTTCCACGCAGCGTTTTCCGTCGGCTGGTGAGAATCCAGGAGATGTCGGCGAAAGGAACGAAGAGTTTGGTCCTCGTTCAAACCAATTATAGAATCCACCTCGATAGAAACATTCATGAGCTTGTTCCAGGGTTAGGTCGGTGTTGCTGGAAAAATGAACAATTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCACTCGTTATTGATTATTAG</pcr_primer_p1>
		<pcr_primer_p2>TTTCAACAGTTTCTACTCACAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGCACTCGTTATTGATTATTAGACTTGTTGGTCCAAAAATCGCATCTCGGTATCCAGCTCTTCGATTTTTTTTGGATGGTTCCCAATCTCCAGTTACAATTTGATGCATAGATGGTTTCGGGGGTTGAGGTGTCATATAAAACCAAAGAGAAGCCATCATAGCCAATGGAGGATCCATTTTTGTCATTACAAGATTTGGATTCTCTAGCAAGTCGACTTTGACACCTTTTGTGAGTAGAAACTGTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>CGCACTCGTTATTGATTATTAGACTTGTTGGTCCAAAAATCGCATCTCGGTATCCAGCTCTTCGAYTTTTTTTGGATGGTTCCCAATCTCCAGTTACAATTTGATGCATAGATGGTTTCGGGGGTTGAGGTGTCATATAAAACCAAAGAGAAGCCATCATAGCCAATGGAGGATCCATTTTTGTCATTACAAGATTTGGATTCTCTAGCAAGTCGACTTTGACACCTTTTGTGAGTAGAAACTGTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30270</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>1038129</contig_pos>
        <strand>+</strand>
        <context>TTGGGAGGGA[A/G]AAGGAGAGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTATTTCAAGACAAAACGGGAAAGAATAAACGGGTGGAGTTGGGAGGGA</left_flank>
        <right_flank>AAGGAGAGGGAAAATAGCGTCACAAGTTTCAAAGTACACCAGCTAACCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGTCAGGGTTTTTCTTCAGATTTTTCGTCAGGTTCGACCGTTTGGCGACGTCACGCGGTCGAATCTGACAAAGAAACCTGACGAAGAAACCTGATGAAAAAAAAACCTGACGGACGGACCTCGCGGACCTCACGGACGGACCTCACGGACGAACCTCACGGACCTTACGGACGAACCTGACGGAACGAACCTCACGGACGGACCACACGGCCGACCCGAAGTGTGGGCCTAAAAATTTTAGCAAACAAGACTCTGAAAATAGGGAACTTTTAGCACATGAGACAAACGATATTCTAGAATCTGCCAAATGTATGTGACAGATGAGCGGGACTCTTCTCTCCTTCTTTCGGATGATTTTTTTTTCATTCCGTCTTTCAGAATTGTCATTTCATTCCTGTTATTGCTACCAACTCGTGAGAAAAGTTCCTTTAAATAGTAAGATTGCAATTTATTTCAAGACAAAACGGGAAAGAATAAACGGGTGGAGTTGGGAGGGAGAAGGAGAGGGAAAATAGCGTCACAAGTTTCAAAGTACACCAGCTAACCGAAGAAAATTAAAATCGGTCTTCCCAAGGATCTCTTCAAAAATGAAAAGATATGGAATGGACCATCTAAACGAAAGCGGGAGCAGCAACTAGAAGAAAATAATACACTAAAATATTAAGAGGTTGAAAGAAGATGAAGAAAGAAGAAAAAGAAATAAAATAATGGAATAATTGAAAGAGGTGTTGGGTTTGTGTGAAGGCTTATGTATATATAAATTGTATGTATAAATGGTACAATTCTATCAGTCGGACTAAAAAAATACTACTTCCATGGGGTAACTATGGGTGGGGGGCCAAAGAGTGTGGGGGAACAGGGTCTGTACAACAAAATCACCGGGGGTTACTGCAGAAAAAAAGAGCTGGACGACGCCAGGAAAGAATAATTATGGGTATTATGTTGGATAATAATAGCAGTGAATAAGATTTTTTGAACAGAAGAAAGACGATTGAATT</canonical>
            <polymorphic>TTCGTCAGGGTTTTTCTTCAGATTTTTCGTCAGGTTCGACCGTTTGGCGACGTCACGCGGTCGAATCTGACAAAGAAACCTGACGAAGAAACCTGATGAAAAAAAAACCTGACGGACGGACCTCGCGGACCTCACGGACGGACCTCACGGACGAACCTCACGGACCTTACGGACGAACCTGACGGAACGAACCTCACGGACGGACCACACGGCCGACCCGAAGTGTGGGCCTAAAAATTTTAGCAAACAAGACTCTGAAAATAGGGAACTTTTAGCACATGAGACAAACGATATTCTAGAATCTGCCAAATGTATGTGACAGATGAGCGGGACTCTTCTCTCCTTCTTTCGGATGATTTTTTTTTCATTCCGTCTTTCAGAATTGTCATTTCATTCCTGTTATTGCTACCAACTCGTGAGAAAAGTTCCTTTAAATAGTAAGATTGCAATTTATTTCAAGACAAAACGGGAAAGAATAAACGGGTGGAGTTGGGAGGGARAAGGAGAGGGAAAATAGCGTCACAAGTTTCAAAGTACACCAGCTAACCGAAGAAAATTAAAATCGGTCTTCCCAAGGATCTCTTCAAAAATGAAAAGATATGGAATGGACCATCTAAACGAAAGCGGGAGCAGCAACTAGAAGAAAATAATACACTAAAATATTAAGAGGTTGAAAGAAGATGAAGAAAGAAGAAAAAGAAATAAAATAATGGAATAATTGAAAGAGGTGTTGGGTTTGTGTGAAGGCTTATGTATATATAAATTGTATGTATAAATGGTACAATTCTATCAGTCGGACTAAAAAAATACTACTTCCATGGGGTAACTATGGGTGGGGGGCCAAAGAGTGTGGGGGAACAGGGTCTGTACAACAAAATCACCGGGGGTTACTGCAGAAAAAAAGAGCTGGACGACGCCAGGAAAGAATAATTATGGGTATTATGTTGGATAATAATAGCAGTGAATAAGATTTTTTGAACAGAAGAAAGACGATTGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCAATTTATTTCAAGACAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TCTTCTTTCTTCATCTTCTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGCAATTTATTTCAAGACAAAACGGGAAAGAATAAACGGGTGGAGTTGGGAGGGAGAAGGAGAGGGAAAATAGCGTCACAAGTTTCAAAGTACACCAGCTAACCGAAGAAAATTAAAATCGGTCTTCCCAAGGATCTCTTCAAAAATGAAAAGATATGGAATGGACCATCTAAACGAAAGCGGGAGCAGCAACTAGAAGAAAATAATACACTAAAATATTAAGAGGTTGAAAGAAGATGAAGAAAGAAGA</canonical_amplicon>
		<polymorphic_amplicon>TGCAATTTATTTCAAGACAAAACGGGAAAGAATAAACGGGTGGAGTTGGGAGGGARAAGGAGAGGGAAAATAGCGTCACAAGTTTCAAAGTACACCAGCTAACCGAAGAAAATTAAAATCGGTCTTCCCAAGGATCTCTTCAAAAATGAAAAGATATGGAATGGACCATCTAAACGAAAGCGGGAGCAGCAACTAGAAGAAAATAATACACTAAAATATTAAGAGGTTGAAAGAAGATGAAGAAAGAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30271</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>1083188</contig_pos>
        <strand></strand>
        <context>cttttattct[C/G]ctttactact</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AACGAAAATTTAAAATATTTTCGAATTCCCATTTCCTCACCTTTTATTCT</left_flank>
        <right_flank>CTTTACTACTCCTGTCATCTGAACTCCTGCCAATTTCAGAAAGTGTCCTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATAACAGGGATAATTTAGCCATAGTTCAAATTTCTCTGTTAATTTCTTCGCAAAGGTTGCCCATAAAATTGCCTTTTTCCAAAAAAAGAATAGTCAATGGGAGTTGAAAGGTGGTACTCAACTTTTGGATCTTTGTTTTTTGCGTGACCTTTTTCTGTGTGGTCTTGTGTGGCCGGTCGTACTTTATAAAACAAAAGTTTAATTAGAAAATTAAATTTTACACATTTTTTCTATTTTTTAAAAAATATTTGCACGTGAAAATACACCCCCTAAATTTCAAGGTAGCCGTTAAAAGTATTTTTAGTTCTCAAACTTTTTTTCCAATCCCCACTTCCTCACCTTTTATTTTCTACTTTGGTGTATTGAATTCGGAATTTTTTAAAATCCCGATTTCGCCCCAATGGTTCAAAAGTTTTATATCAAAAGTTTACGAAATACAGATCAAGAAACGAAAATTTAAAATATTTTCGAATTCCCATTTCCTCACCTTTTATTCTCCTTTACTACTCCTGTCATCTGAACTCCTGCCAATTTCAGAAAGTGTCCTGGATGGTGTCCTTGAAGTCCTGAGTTCCCGGGAACCAAGAAGCACCTAAAACATAAATATTGAAATTGATCTGAATCCCGATTTCACCCCCATTATTTTTATCACTGGTTTCTCGAACTGAATTTTTAAATTTAAAATTTTTCCGGAAAAAAAGTGGTTCAGAAGTTTACAAAAAACCAGGGCTGTCCAAAACGAAGGCCGGGCCTCGGCCGGCCTCGAAAAAGCCTCGGCCGAAGAAAAAAAGGCCTCGGCGCGCTCCATTGAGAAAAAGCCTCGCGAGGCCGGCCTCGCAAATGTGACTACGGTCAGCAAGTCGCATATTTTACGACAAGTTGCGTATTTTTTTTAATTTTTTGTTTTTTCTCGCTCTTTTTCAGCAAATCACGATTTTTCGAGAGTTTTCTCGATTTTTCCATCGATCTGTGGCGACATGAACATTTCGAACGCCAGT</canonical>
            <polymorphic>CTATAACAGGGATAATTTAGCCATAGTTCAAATTTCTCTGTTAATTTCTTCGCAAAGGTTGCCCATAAAATTGCCTTTTTCCAAAAAAAGAATAGTCAATGGGAGTTGAAAGGTGGTACTCAACTTTTGGATCTTTGTTTTTTGCGTGACCTTTTTCTGTGTGGTCTTGTGTGGCCGGTCGTACTTTATAAAACAAAAGTTTAATTAGAAAATTAAATTTTACACATTTTTTCTATTTTTTAAAAAATATTTGCACGTGAAAATACACCCCCTAAATTTCAAGGTAGCCGTTAAAAGTATTTTTAGTTCTCAAACTTTTTTTCCAATCCCCACTTCCTCACCTTTTATTTTCTACTTTGGTGTATTGAATTCGGAATTTTTTAAAATCCCGATTTCGCCCCAATGGTTCAAAAGTTTTATATCAAAAGTTTACGAAATACAGATCAAGAAACGAAAATTTAAAATATTTTCGAATTCCCATTTCCTCACCTTTTATTCTSCTTTACTACTCCTGTCATCTGAACTCCTGCCAATTTCAGAAAGTGTCCTGGATGGTGTCCTTGAAGTCCTGAGTTCCCGGGAACCAAGAAGCACCTAAAACATAAATATTGAAATTGATCTGAATCCCGATTTCACCCCCATTATTTTTATCACTGGTTTCTCGAACTGAATTTTTAAATTTAAAATTTTTCCGGAAAAAAAGTGGTTCAGAAGTTTACAAAAAACCAGGGCTGTCCAAAACGAAGGCCGGGCCTCGGCCGGCCTCGAAAAAGCCTCGGCCGAAGAAAAAAAGGCCTCGGCGCGCTCCATTGAGAAAAAGCCTCGCGAGGCCGGCCTCGCAAATGTGACTACGGTCAGCAAGTCGCATATTTTACGACAAGTTGCGTATTTTTTTTAATTTTTTGTTTTTTCTCGCTCTTTTTCAGCAAATCACGATTTTTCGAGAGTTTTCTCGATTTTTCCATCGATCTGTGGCGACATGAACATTTCGAACGCCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTACGAAATACAGATCAAGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TGTAAACTTCTGAACCACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>292</pcr_amplicon_size>
		<canonical_amplicon>TTTACGAAATACAGATCAAGAAACGAAAATTTAAAATATTTTCGAATTCCCATTTCCTCACCTTTTATTCTCCTTTACTACTCCTGTCATCTGAACTCCTGCCAATTTCAGAAAGTGTCCTGGATGGTGTCCTTGAAGTCCTGAGTTCCCGGGAACCAAGAAGCACCTAAAACATAAATATTGAAATTGATCTGAATCCCGATTTCACCCCCATTATTTTTATCACTGGTTTCTCGAACTGAATTTTTAAATTTAAAATTTTTCCGGAAAAAAAGTGGTTCAGAAGTTTACA</canonical_amplicon>
		<polymorphic_amplicon>TTTACGAAATACAGATCAAGAAACGAAAATTTAAAATATTTTCGAATTCCCATTTCCTCACCTTTTATTCTSCTTTACTACTCCTGTCATCTGAACTCCTGCCAATTTCAGAAAGTGTCCTGGATGGTGTCCTTGAAGTCCTGAGTTCCCGGGAACCAAGAAGCACCTAAAACATAAATATTGAAATTGATCTGAATCCCGATTTCACCCCCATTATTTTTATCACTGGTTTCTCGAACTGAATTTTTAAATTTAAAATTTTTCCGGAAAAAAAGTGGTTCAGAAGTTTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30272</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>1095272</contig_pos>
        <strand>+</strand>
        <context>AAACATTTAG[C/G]AGCGGAGCGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTAGCTGTCAGGTTTGTAGCGAATCCTCGGATTTCACGGAAAACATTTAG</left_flank>
        <right_flank>AGCGGAGCGTGATTGGGGTGGAAAAGTGTGGTTTTCACTGAAAAAGTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTGAAATTTCTTTTCTATTACTTGAAATCACTCTGTGCGTAATCTACCAACCTTTATTAGGTCAGCTTGTACTTTCGCCTCCATCTGTTGTGTTTTGACTATCTGCTTATCACAGAAAGTCAACAATTCAACAGGAATCAATCGCCCTCCTCTTGCTCCCATTACCACTACGGTGAAGAGGTCCGGAAATTTGAGAATCTTCTCGTATCTTCCTTTGAAGTAGTCAAAAACTGACGACACTTTACCATCCGATTTTTCGAACTTTTGGTTCCTCGCTGTTTCTCCAAACGAATGGATTTTTACCATTTTTCGGTCGTTTTCTAATCCTTCCGAGCTACCGTAATCCAAATAACAACATAGGCCTGAAAATTCGATGTTCCTTAAAAATGTGTTTCATTGAAATATTTACCTTTGTAGTTTTGAATATGTTCACGAGCCCACCCGGAAGTAGCTGTCAGGTTTGTAGCGAATCCTCGGATTTCACGGAAAACATTTAGCAGCGGAGCGTGATTGGGGTGGAAAAGTGTGGTTTTCACTGAAAAAGTTTCATATTGATCAATTAAATTTCCAGACGTATACTTACACTCAGTGATGAGATATGCAGTTGGGGTCGGGTTTTTTCCTTGGAGAACTCGAACTGCTTTTGTTGCTCCAACCGAGGAAGCTTGCATTCCTTGTCCTCTGACTTCCCCAATGGCAATGTTCCTGTCGGGATGCGACAAGTAGTGAATACAATTGTTTTTAGTAAAGACGTTCGGACTGCAAAGCAAAATGAAATTTATTCAAATTTAGACTTTTATTCACTTACTTTTCCAGAGCGTGTCCCGAAGCCATCATATTAAGAGATTCGAGAAGAGTGACATCTGCTCGAGCTGGTCTAATATTCACGGCCTTCCCGATTTCGTTAGATGATGTTTGGAAGGATTCGGCCACATTCGTGATCTTGAACTCAGCTTTCACGAAATTCGGGAATCCTTCAATCTTCTTTCCCGCGATTG</canonical>
            <polymorphic>ATCTGAAATTTCTTTTCTATTACTTGAAATCACTCTGTGCGTAATCTACCAACCTTTATTAGGTCAGCTTGTACTTTCGCCTCCATCTGTTGTGTTTTGACTATCTGCTTATCACAGAAAGTCAACAATTCAACAGGAATCAATCGCCCTCCTCTTGCTCCCATTACCACTACGGTGAAGAGGTCCGGAAATTTGAGAATCTTCTCGTATCTTCCTTTGAAGTAGTCAAAAACTGACGACACTTTACCATCCGATTTTTCGAACTTTTGGTTCCTCGCTGTTTCTCCAAACGAATGGATTTTTACCATTTTTCGGTCGTTTTCTAATCCTTCCGAGCTACCGTAATCCAAATAACAACATAGGCCTGAAAATTCGATGTTCCTTAAAAATGTGTTTCATTGAAATATTTACCTTTGTAGTTTTGAATATGTTCACGAGCCCACCCGGAAGTAGCTGTCAGGTTTGTAGCGAATCCTCGGATTTCACGGAAAACATTTAGSAGCGGAGCGTGATTGGGGTGGAAAAGTGTGGTTTTCACTGAAAAAGTTTCATATTGATCAATTAAATTTCCAGACGTATACTTACACTCAGTGATGAGATATGCAGTTGGGGTCGGGTTTTTTCCTTGGAGAACTCGAACTGCTTTTGTTGCTCCAACCGAGGAAGCTTGCATTCCTTGTCCTCTGACTTCCCCAATGGCAATGTTCCTGTCGGGATGCGACAAGTAGTGAATACAATTGTTTTTAGTAAAGACGTTCGGACTGCAAAGCAAAATGAAATTTATTCAAATTTAGACTTTTATTCACTTACTTTTCCAGAGCGTGTCCCGAAGCCATCATATTAAGAGATTCGAGAAGAGTGACATCTGCTCGAGCTGGTCTAATATTCACGGCCTTCCCGATTTCGTTAGATGATGTTTGGAAGGATTCGGCCACATTCGTGATCTTGAACTCAGCTTTCACGAAATTCGGGAATCCTTCAATCTTCTTTCCCGCGATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTAATCCAAATAACAACATAGG</pcr_primer_p1>
		<pcr_primer_p2>TGAGTGTAAGTATACGTCTGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTAATCCAAATAACAACATAGGCCTGAAAATTCGATGTTCCTTAAAAATGTGTTTCATTGAAATATTTACCTTTGTAGTTTTGAATATGTTCACGAGCCCACCCGGAAGTAGCTGTCAGGTTTGTAGCGAATCCTCGGATTTCACGGAAAACATTTAGCAGCGGAGCGTGATTGGGGTGGAAAAGTGTGGTTTTCACTGAAAAAGTTTCATATTGATCAATTAAATTTCCAGACGTATACTTACACTCA</canonical_amplicon>
		<polymorphic_amplicon>CGTAATCCAAATAACAACATAGGCCTGAAAATTCGATGTTCCTTAAAAATGTGTTTCATTGAAATATTTACCTTTGTAGTTTTGAATATGTTCACGAGCCCACCCGGAAGTAGCTGTCAGGTTTGTAGCGAATCCTCGGATTTCACGGAAAACATTTAGSAGCGGAGCGTGATTGGGGTGGAAAAGTGTGGTTTTCACTGAAAAAGTTTCATATTGATCAATTAAATTTCCAGACGTATACTTACACTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30273</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>1185238</contig_pos>
        <strand>+</strand>
        <context>TGACAAATTA[A/T]AAAGATCATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAAAAGTAGACAAAATTCAGTAGATGTTGAACTTAAGAATGACAAATTA</left_flank>
        <right_flank>AAAGATCATCTAGTAGTTTAAATAGGAAGGGATGACTTTATGATCTGAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGACGTCCTCCATGAGAAAGTTGAACAACGGCAAGTGCTCCATCCTGTTTGATTGTCTGAGCCCATTTTGTGTAGGCTTCACGACGAGCCGGAGTTTCACCTTCTTTGAAGATCATAGCATTTCCTGGAGCCTCAAGATGAACCTGAAATACATTCTTGAAAATAGTCCAAACTATGAAAACCCACCGGTGACACCTGGACGTTTCCAGTGAGGACCAATCCAAACTTTCCGTTTCCCCATTTATCATATACATTGAGAATTTCTTGAGTGGGAACTCCATTCACTTTTGGATTTGAATGATCGAAAACGGACAACATTTCGGTAAGAGCAGCTTTCAAAAAACGATTTTGGGCATACTTTCCACTTGGGAACTTCAAACGTTCCCCAAGAATTGCTTTTGCAGATTCAGGAGCAGCAATTGAAAAACGACGGACCATTTTGGAAAGTTAAAAAGTAGACAAAATTCAGTAGATGTTGAACTTAAGAATGACAAATTAAAAAGATCATCTAGTAGTTTAAATAGGAAGGGATGACTTTATGATCTGAGAGAACGAGAAAGATATCTGACGAAATAGGATGATATTATATGATAAGAAAAAGAGACCGCCGGTGTTTTGCTGACAATTCCCAAATTGTTCTTTGCTGTTAACATAGTTGAGCACAGTGTATTGAGGTTCTGAACGTGTTTTTTTTCACAGACTACCTACTCAATTCACTAGACTTCAGGAATTCCCGAAATGATTTTGTTTTGAAAAAAAAATCCAGCTTCAGGAATGAAACTGTTTTCCCGAAATCCGGAAAGAGGAATTCGGAATTTCGAGGTTTCCAATGGAAGGAAAAAATGTGTAGCTCAAAAACATATTTCTCGCGGCAGAGAATTCTTGCTGAACGTGTTTGTTGAAATGAAAAAAATCACGGAATCCTCTCATCTCTGCTAAACTTGTAGTCGTCTCTAAAGAATCTAAATTGTACCTGTCCTCCAAATTATTCAATATATT</canonical>
            <polymorphic>TTGACGTCCTCCATGAGAAAGTTGAACAACGGCAAGTGCTCCATCCTGTTTGATTGTCTGAGCCCATTTTGTGTAGGCTTCACGACGAGCCGGAGTTTCACCTTCTTTGAAGATCATAGCATTTCCTGGAGCCTCAAGATGAACCTGAAATACATTCTTGAAAATAGTCCAAACTATGAAAACCCACCGGTGACACCTGGACGTTTCCAGTGAGGACCAATCCAAACTTTCCGTTTCCCCATTTATCATATACATTGAGAATTTCTTGAGTGGGAACTCCATTCACTTTTGGATTTGAATGATCGAAAACGGACAACATTTCGGTAAGAGCAGCTTTCAAAAAACGATTTTGGGCATACTTTCCACTTGGGAACTTCAAACGTTCCCCAAGAATTGCTTTTGCAGATTCAGGAGCAGCAATTGAAAAACGACGGACCATTTTGGAAAGTTAAAAAGTAGACAAAATTCAGTAGATGTTGAACTTAAGAATGACAAATTAWAAAGATCATCTAGTAGTTTAAATAGGAAGGGATGACTTTATGATCTGAGAGAACGAGAAAGATATCTGACGAAATAGGATGATATTATATGATAAGAAAAAGAGACCGCCGGTGTTTTGCTGACAATTCCCAAATTGTTCTTTGCTGTTAACATAGTTGAGCACAGTGTATTGAGGTTCTGAACGTGTTTTTTTTCACAGACTACCTACTCAATTCACTAGACTTCAGGAATTCCCGAAATGATTTTGTTTTGAAAAAAAAATCCAGCTTCAGGAATGAAACTGTTTTCCCGAAATCCGGAAAGAGGAATTCGGAATTTCGAGGTTTCCAATGGAAGGAAAAAATGTGTAGCTCAAAAACATATTTCTCGCGGCAGAGAATTCTTGCTGAACGTGTTTGTTGAAATGAAAAAAATCACGGAATCCTCTCATCTCTGCTAAACTTGTAGTCGTCTCTAAAGAATCTAAATTGTACCTGTCCTCCAAATTATTCAATATATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>449 352 130 34 21 14</canonical_bands>
                <polymorphic_bands>449 352 130 35 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATTTTGGAAAGTTAAAAAGTA</pcr_primer_p1>
		<pcr_primer_p2>ACGTTCAGAACCTCAATACACT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCATTTTGGAAAGTTAAAAAGTAGACAAAATTCAGTAGATGTTGAACTTAAGAATGACAAATTAAAAAGATCATCTAGTAGTTTAAATAGGAAGGGATGACTTTATGATCTGAGAGAACGAGAAAGATATCTGACGAAATAGGATGATATTATATGATAAGAAAAAGAGACCGCCGGTGTTTTGCTGACAATTCCCAAATTGTTCTTTGCTGTTAACATAGTTGAGCACAGTGTATTGAGGTTCTGAACGT</canonical_amplicon>
		<polymorphic_amplicon>CCATTTTGGAAAGTTAAAAAGTAGACAAAATTCAGTAGATGTTGAACTTAAGAATGACAAATTAWAAAGATCATCTAGTAGTTTAAATAGGAAGGGATGACTTTATGATCTGAGAGAACGAGAAAGATATCTGACGAAATAGGATGATATTATATGATAAGAAAAAGAGACCGCCGGTGTTTTGCTGACAATTCCCAAATTGTTCTTTGCTGTTAACATAGTTGAGCACAGTGTATTGAGGTTCTGAACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30274</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>1185302</contig_pos>
        <strand>+</strand>
        <context>CGAGAAAGAT[A/G]TCTGACGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGTTTAAATAGGAAGGGATGACTTTATGATCTGAGAGAACGAGAAAGAT</left_flank>
        <right_flank>TCTGACGAAATAGGATGATATTATATGATAAGAAAAAGAGACCGCCGGTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTTGTGTAGGCTTCACGACGAGCCGGAGTTTCACCTTCTTTGAAGATCATAGCATTTCCTGGAGCCTCAAGATGAACCTGAAATACATTCTTGAAAATAGTCCAAACTATGAAAACCCACCGGTGACACCTGGACGTTTCCAGTGAGGACCAATCCAAACTTTCCGTTTCCCCATTTATCATATACATTGAGAATTTCTTGAGTGGGAACTCCATTCACTTTTGGATTTGAATGATCGAAAACGGACAACATTTCGGTAAGAGCAGCTTTCAAAAAACGATTTTGGGCATACTTTCCACTTGGGAACTTCAAACGTTCCCCAAGAATTGCTTTTGCAGATTCAGGAGCAGCAATTGAAAAACGACGGACCATTTTGGAAAGTTAAAAAGTAGACAAAATTCAGTAGATGTTGAACTTAAGAATGACAAATTAAAAAGATCATCTAGTAGTTTAAATAGGAAGGGATGACTTTATGATCTGAGAGAACGAGAAAGATATCTGACGAAATAGGATGATATTATATGATAAGAAAAAGAGACCGCCGGTGTTTTGCTGACAATTCCCAAATTGTTCTTTGCTGTTAACATAGTTGAGCACAGTGTATTGAGGTTCTGAACGTGTTTTTTTTCACAGACTACCTACTCAATTCACTAGACTTCAGGAATTCCCGAAATGATTTTGTTTTGAAAAAAAAATCCAGCTTCAGGAATGAAACTGTTTTCCCGAAATCCGGAAAGAGGAATTCGGAATTTCGAGGTTTCCAATGGAAGGAAAAAATGTGTAGCTCAAAAACATATTTCTCGCGGCAGAGAATTCTTGCTGAACGTGTTTGTTGAAATGAAAAAAATCACGGAATCCTCTCATCTCTGCTAAACTTGTAGTCGTCTCTAAAGAATCTAAATTGTACCTGTCCTCCAAATTATTCAATATATTCGTGAACTCTCAGTCAACACAGAATGCCTCACTTCCTCAGCCATCACATGTGGATACCTTCCTT</canonical>
            <polymorphic>CATTTTGTGTAGGCTTCACGACGAGCCGGAGTTTCACCTTCTTTGAAGATCATAGCATTTCCTGGAGCCTCAAGATGAACCTGAAATACATTCTTGAAAATAGTCCAAACTATGAAAACCCACCGGTGACACCTGGACGTTTCCAGTGAGGACCAATCCAAACTTTCCGTTTCCCCATTTATCATATACATTGAGAATTTCTTGAGTGGGAACTCCATTCACTTTTGGATTTGAATGATCGAAAACGGACAACATTTCGGTAAGAGCAGCTTTCAAAAAACGATTTTGGGCATACTTTCCACTTGGGAACTTCAAACGTTCCCCAAGAATTGCTTTTGCAGATTCAGGAGCAGCAATTGAAAAACGACGGACCATTTTGGAAAGTTAAAAAGTAGACAAAATTCAGTAGATGTTGAACTTAAGAATGACAAATTAAAAAGATCATCTAGTAGTTTAAATAGGAAGGGATGACTTTATGATCTGAGAGAACGAGAAAGATRTCTGACGAAATAGGATGATATTATATGATAAGAAAAAGAGACCGCCGGTGTTTTGCTGACAATTCCCAAATTGTTCTTTGCTGTTAACATAGTTGAGCACAGTGTATTGAGGTTCTGAACGTGTTTTTTTTCACAGACTACCTACTCAATTCACTAGACTTCAGGAATTCCCGAAATGATTTTGTTTTGAAAAAAAAATCCAGCTTCAGGAATGAAACTGTTTTCCCGAAATCCGGAAAGAGGAATTCGGAATTTCGAGGTTTCCAATGGAAGGAAAAAATGTGTAGCTCAAAAACATATTTCTCGCGGCAGAGAATTCTTGCTGAACGTGTTTGTTGAAATGAAAAAAATCACGGAATCCTCTCATCTCTGCTAAACTTGTAGTCGTCTCTAAAGAATCTAAATTGTACCTGTCCTCCAAATTATTCAATATATTCGTGAACTCTCAGTCAACACAGAATGCCTCACTTCCTCAGCCATCACATGTGGATACCTTCCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATTTTGGAAAGTTAAAAAGTA</pcr_primer_p1>
		<pcr_primer_p2>ACGTTCAGAACCTCAATACACT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCATTTTGGAAAGTTAAAAAGTAGACAAAATTCAGTAGATGTTGAACTTAAGAATGACAAATTAAAAAGATCATCTAGTAGTTTAAATAGGAAGGGATGACTTTATGATCTGAGAGAACGAGAAAGATATCTGACGAAATAGGATGATATTATATGATAAGAAAAAGAGACCGCCGGTGTTTTGCTGACAATTCCCAAATTGTTCTTTGCTGTTAACATAGTTGAGCACAGTGTATTGAGGTTCTGAACGT</canonical_amplicon>
		<polymorphic_amplicon>CCATTTTGGAAAGTTAAAAAGTAGACAAAATTCAGTAGATGTTGAACTTAAGAATGACAAATTAAAAAGATCATCTAGTAGTTTAAATAGGAAGGGATGACTTTATGATCTGAGAGAACGAGAAAGATRTCTGACGAAATAGGATGATATTATATGATAAGAAAAAGAGACCGCCGGTGTTTTGCTGACAATTCCCAAATTGTTCTTTGCTGTTAACATAGTTGAGCACAGTGTATTGAGGTTCTGAACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30275</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>1185388</contig_pos>
        <strand>+</strand>
        <context>CTTTGCTGTT[A/T]ACATAGTTSA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGAGACCGCCGGTGTTTTGCTGACAATTCCCAAATTGTTCTTTGCTGTT</left_flank>
        <right_flank>ACATAGTTGAGCACAGTGTATTGAGGTTCTGAACGTGTTTTTTTTCACAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACATTCTTGAAAATAGTCCAAACTATGAAAACCCACCGGTGACACCTGGACGTTTCCAGTGAGGACCAATCCAAACTTTCCGTTTCCCCATTTATCATATACATTGAGAATTTCTTGAGTGGGAACTCCATTCACTTTTGGATTTGAATGATCGAAAACGGACAACATTTCGGTAAGAGCAGCTTTCAAAAAACGATTTTGGGCATACTTTCCACTTGGGAACTTCAAACGTTCCCCAAGAATTGCTTTTGCAGATTCAGGAGCAGCAATTGAAAAACGACGGACCATTTTGGAAAGTTAAAAAGTAGACAAAATTCAGTAGATGTTGAACTTAAGAATGACAAATTAAAAAGATCATCTAGTAGTTTAAATAGGAAGGGATGACTTTATGATCTGAGAGAACGAGAAAGATATCTGACGAAATAGGATGATATTATATGATAAGAAAAAGAGACCGCCGGTGTTTTGCTGACAATTCCCAAATTGTTCTTTGCTGTTAACATAGTTGAGCACAGTGTATTGAGGTTCTGAACGTGTTTTTTTTCACAGACTACCTACTCAATTCACTAGACTTCAGGAATTCCCGAAATGATTTTGTTTTGAAAAAAAAATCCAGCTTCAGGAATGAAACTGTTTTCCCGAAATCCGGAAAGAGGAATTCGGAATTTCGAGGTTTCCAATGGAAGGAAAAAATGTGTAGCTCAAAAACATATTTCTCGCGGCAGAGAATTCTTGCTGAACGTGTTTGTTGAAATGAAAAAAATCACGGAATCCTCTCATCTCTGCTAAACTTGTAGTCGTCTCTAAAGAATCTAAATTGTACCTGTCCTCCAAATTATTCAATATATTCGTGAACTCTCAGTCAACACAGAATGCCTCACTTCCTCAGCCATCACATGTGGATACCTTCCTTGCTTATGATCAGGTAACAACGATGTGGTTTCTCTAACTCCTGGTTTTCACTTGTCATGTTTTCATAACGGATGCTCTAGATACTTC</canonical>
            <polymorphic>TACATTCTTGAAAATAGTCCAAACTATGAAAACCCACCGGTGACACCTGGACGTTTCCAGTGAGGACCAATCCAAACTTTCCGTTTCCCCATTTATCATATACATTGAGAATTTCTTGAGTGGGAACTCCATTCACTTTTGGATTTGAATGATCGAAAACGGACAACATTTCGGTAAGAGCAGCTTTCAAAAAACGATTTTGGGCATACTTTCCACTTGGGAACTTCAAACGTTCCCCAAGAATTGCTTTTGCAGATTCAGGAGCAGCAATTGAAAAACGACGGACCATTTTGGAAAGTTAAAAAGTAGACAAAATTCAGTAGATGTTGAACTTAAGAATGACAAATTAAAAAGATCATCTAGTAGTTTAAATAGGAAGGGATGACTTTATGATCTGAGAGAACGAGAAAGATATCTGACGAAATAGGATGATATTATATGATAAGAAAAAGAGACCGCCGGTGTTTTGCTGACAATTCCCAAATTGTTCTTTGCTGTTWACATAGTTGAGCACAGTGTATTGAGGTTCTGAACGTGTTTTTTTTCACAGACTACCTACTCAATTCACTAGACTTCAGGAATTCCCGAAATGATTTTGTTTTGAAAAAAAAATCCAGCTTCAGGAATGAAACTGTTTTCCCGAAATCCGGAAAGAGGAATTCGGAATTTCGAGGTTTCCAATGGAAGGAAAAAATGTGTAGCTCAAAAACATATTTCTCGCGGCAGAGAATTCTTGCTGAACGTGTTTGTTGAAATGAAAAAAATCACGGAATCCTCTCATCTCTGCTAAACTTGTAGTCGTCTCTAAAGAATCTAAATTGTACCTGTCCTCCAAATTATTCAATATATTCGTGAACTCTCAGTCAACACAGAATGCCTCACTTCCTCAGCCATCACATGTGGATACCTTCCTTGCTTATGATCAGGTAACAACGATGTGGTTTCTCTAACTCCTGGTTTTCACTTGTCATGTTTTCATAACGGATGCTCTAGATACTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTTAAC</site>
                <isoschizomers>
                    <enzyme>BstHPI</enzyme>
                    <enzyme>HpaI</enzyme>
                    <enzyme>KspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>499 366 135</canonical_bands>
                <polymorphic_bands>865 135</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 299 130 34 21 14</canonical_bands>
                <polymorphic_bands>632 299 34 21 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATGTTGAACTTAAGAATGACAAA</pcr_primer_p1>
		<pcr_primer_p2>GTGAATTGAGTAGGTAGTCTGTGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GATGTTGAACTTAAGAATGACAAATTAAAAAGATCATCTAGTAGTTTAAATAGGAAGGGATGACTTTATGATCTGAGAGAACGAGAAAGATATCTGACGAAATAGGATGATATTATATGATAAGAAAAAGAGACCGCCGGTGTTTTGCTGACAATTCCCAAATTGTTCTTTGCTGTTAACATAGTTGAGCACAGTGTATTGAGGTTCTGAACGTGTTTTTTTTCACAGACTACCTACTCAATTCAC</canonical_amplicon>
		<polymorphic_amplicon>GATGTTGAACTTAAGAATGACAAATTAAAAAGATCATCTAGTAGTTTAAATAGGAAGGGATGACTTTATGATCTGAGAGAACGAGAAAGATATCTGACGAAATAGGATGATATTATATGATAAGAAAAAGAGACCGCCGGTGTTTTGCTGACAATTCCCAAATTGTTCTTTGCTGTTWACATAGTTGAGCACAGTGTATTGAGGTTCTGAACGTGTTTTTTTTCACAGACTACCTACTCAATTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30276</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>1185397</contig_pos>
        <strand>+</strand>
        <context>TWACATAGTT[C/G]AGCACAGTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCGGTGTTTTGCTGACAATTCCCAAATTGTTCTTTGCTGTTAACATAGTT</left_flank>
        <right_flank>AGCACAGTGTATTGAGGTTCTGAACGTGTTTTTTTTCACAGACTACCTAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAATAGTCCAAACTATGAAAACCCACCGGTGACACCTGGACGTTTCCAGTGAGGACCAATCCAAACTTTCCGTTTCCCCATTTATCATATACATTGAGAATTTCTTGAGTGGGAACTCCATTCACTTTTGGATTTGAATGATCGAAAACGGACAACATTTCGGTAAGAGCAGCTTTCAAAAAACGATTTTGGGCATACTTTCCACTTGGGAACTTCAAACGTTCCCCAAGAATTGCTTTTGCAGATTCAGGAGCAGCAATTGAAAAACGACGGACCATTTTGGAAAGTTAAAAAGTAGACAAAATTCAGTAGATGTTGAACTTAAGAATGACAAATTAAAAAGATCATCTAGTAGTTTAAATAGGAAGGGATGACTTTATGATCTGAGAGAACGAGAAAGATATCTGACGAAATAGGATGATATTATATGATAAGAAAAAGAGACCGCCGGTGTTTTGCTGACAATTCCCAAATTGTTCTTTGCTGTTAACATAGTTGAGCACAGTGTATTGAGGTTCTGAACGTGTTTTTTTTCACAGACTACCTACTCAATTCACTAGACTTCAGGAATTCCCGAAATGATTTTGTTTTGAAAAAAAAATCCAGCTTCAGGAATGAAACTGTTTTCCCGAAATCCGGAAAGAGGAATTCGGAATTTCGAGGTTTCCAATGGAAGGAAAAAATGTGTAGCTCAAAAACATATTTCTCGCGGCAGAGAATTCTTGCTGAACGTGTTTGTTGAAATGAAAAAAATCACGGAATCCTCTCATCTCTGCTAAACTTGTAGTCGTCTCTAAAGAATCTAAATTGTACCTGTCCTCCAAATTATTCAATATATTCGTGAACTCTCAGTCAACACAGAATGCCTCACTTCCTCAGCCATCACATGTGGATACCTTCCTTGCTTATGATCAGGTAACAACGATGTGGTTTCTCTAACTCCTGGTTTTCACTTGTCATGTTTTCATAACGGATGCTCTAGATACTTCTACAGTATC</canonical>
            <polymorphic>GAAAATAGTCCAAACTATGAAAACCCACCGGTGACACCTGGACGTTTCCAGTGAGGACCAATCCAAACTTTCCGTTTCCCCATTTATCATATACATTGAGAATTTCTTGAGTGGGAACTCCATTCACTTTTGGATTTGAATGATCGAAAACGGACAACATTTCGGTAAGAGCAGCTTTCAAAAAACGATTTTGGGCATACTTTCCACTTGGGAACTTCAAACGTTCCCCAAGAATTGCTTTTGCAGATTCAGGAGCAGCAATTGAAAAACGACGGACCATTTTGGAAAGTTAAAAAGTAGACAAAATTCAGTAGATGTTGAACTTAAGAATGACAAATTAAAAAGATCATCTAGTAGTTTAAATAGGAAGGGATGACTTTATGATCTGAGAGAACGAGAAAGATATCTGACGAAATAGGATGATATTATATGATAAGAAAAAGAGACCGCCGGTGTTTTGCTGACAATTCCCAAATTGTTCTTTGCTGTTAACATAGTTSAGCACAGTGTATTGAGGTTCTGAACGTGTTTTTTTTCACAGACTACCTACTCAATTCACTAGACTTCAGGAATTCCCGAAATGATTTTGTTTTGAAAAAAAAATCCAGCTTCAGGAATGAAACTGTTTTCCCGAAATCCGGAAAGAGGAATTCGGAATTTCGAGGTTTCCAATGGAAGGAAAAAATGTGTAGCTCAAAAACATATTTCTCGCGGCAGAGAATTCTTGCTGAACGTGTTTGTTGAAATGAAAAAAATCACGGAATCCTCTCATCTCTGCTAAACTTGTAGTCGTCTCTAAAGAATCTAAATTGTACCTGTCCTCCAAATTATTCAATATATTCGTGAACTCTCAGTCAACACAGAATGCCTCACTTCCTCAGCCATCACATGTGGATACCTTCCTTGCTTATGATCAGGTAACAACGATGTGGTTTCTCTAACTCCTGGTTTTCACTTGTCATGTTTTCATAACGGATGCTCTAGATACTTCTACAGTATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATGTTGAACTTAAGAATGACAAA</pcr_primer_p1>
		<pcr_primer_p2>GTGAATTGAGTAGGTAGTCTGTGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GATGTTGAACTTAAGAATGACAAATTAAAAAGATCATCTAGTAGTTTAAATAGGAAGGGATGACTTTATGATCTGAGAGAACGAGAAAGATATCTGACGAAATAGGATGATATTATATGATAAGAAAAAGAGACCGCCGGTGTTTTGCTGACAATTCCCAAATTGTTCTTTGCTGTTAACATAGTTGAGCACAGTGTATTGAGGTTCTGAACGTGTTTTTTTTCACAGACTACCTACTCAATTCAC</canonical_amplicon>
		<polymorphic_amplicon>GATGTTGAACTTAAGAATGACAAATTAAAAAGATCATCTAGTAGTTTAAATAGGAAGGGATGACTTTATGATCTGAGAGAACGAGAAAGATATCTGACGAAATAGGATGATATTATATGATAAGAAAAAGAGACCGCCGGTGTTTTGCTGACAATTCCCAAATTGTTCTTTGCTGTTAACATAGTTSAGCACAGTGTATTGAGGTTCTGAACGTGTTTTTTTTCACAGACTACCTACTCAATTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30277</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>1186742</contig_pos>
        <strand>+</strand>
        <context>TACAGTGTCA[C/T]CAAAGAAGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGAGTCAGCGCCAAGTCTCCAGTTCTCACACTTCAATTGTACAGTGTCA</left_flank>
        <right_flank>CAAAGAAGCTGAGCTTCAAGCATATGATATTTATGGAGGGGAGGAGCTGA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCTGTTTGCAAAGCGAAGCACTGTTGTCCAAACTGTAGGTTCGCCTGGATGTTAGTTTCTAGCGGGATGTTTAATTTTTTAGTTCACTACATAACCAATGAACCTCTTCTTCTACGTCAGTAACTTTTCGTGTGTACCCGGAAAGCCAATCCCTCCCGGATTTCAATTCAGTTACTGTTCTGAGATATCTAATACAGTCGCCTATTTAGGAGTTGTTAACAGCTGTGGAGACATCCAGAACATTCACAAATATTCAAAATGTCGCAGAGATTCTGATTGTTATCCTGGTTACATTTGCGTACGGACCATTGACGAAGGAATGTGCTTCAAGAATCCAGAAGACTGTTCCAACTCCCCATACTATTACATAGCTGTTATGTCATGCTACCTTTCATTCGTCTTGATGCTACTTTACTTTTTCACAAGAGCCTGTTACGAACATCCTCTGAGAGTCAGCGCCAAGTCTCCAGTTCTCACACTTCAATTGTACAGTGTCATCAAAGAAGCTGAGCTTCAAGCATATGATATTTATGGAGGGGAGGAGCTGAGTAAAATGCAAATCGAGCACATTTCAAAGGAAGCTGCTCGTAAAGCATGGATCGAAAATGAGTAATCATCTAATGCACCTGCTTTGGAACATCTTTTGGTGAGATTTTGATACAGTTGGAAAGAAACTTAAAAACTTTTTTATTACAGAATTGGTTCGGGTACGTGGTCTAATGTTCAGAGGACGAGGAGACAGATGAAGAGGAGACTGCTAACGAATTGGAACCTGAATTTATTGAATAATCTAGAAAAGTGTCAAATTTTTTTCTGAAAACTGTTTTATCTTATACAAAATGTTATTTACATAAGTTTTAATAAACGTTTATTGCAATTATTGGAAAAAATATATTCATCGTAGAACCTGTAATAGAAGGGCCCCAACATTGTCAAGTTTGAGCTAATTTATCTTGGTACCAATAAAAGATAAAAAAAACCAACCTATATAAATTGAC</canonical>
            <polymorphic>GAGCTGTTTGCAAAGCGAAGCACTGTTGTCCAAACTGTAGGTTCGCCTGGATGTTAGTTTCTAGCGGGATGTTTAATTTTTTAGTTCACTACATAACCAATGAACCTCTTCTTCTACGTCAGTAACTTTTCGTGTGTACCCGGAAAGCCAATCCCTCCCGGATTTCAATTCAGTTACTGTTCTGAGATATCTAATACAGTCGCCTATTTAGGAGTTGTTAACAGCTGTGGAGACATCCAGAACATTCACAAATATTCAAAATGTCGCAGAGATTCTGATTGTTATCCTGGTTACATTTGCGTACGGACCATTGACGAAGGAATGTGCTTCAAGAATCCAGAAGACTGTTCCAACTCCCCATACTATTACATAGCTGTTATGTCATGCTACCTTTCATTCGTCTTGATGCTACTTTACTTTTTCACAAGAGCCTGTTACGAACATCCTCTGAGAGTCAGCGCCAAGTCTCCAGTTCTCACACTTCAATTGTACAGTGTCAYCAAAGAAGCTGAGCTTCAAGCATATGATATTTATGGAGGGGAGGAGCTGAGTAAAATGCAAATCGAGCACATTTCAAAGGAAGCTGCTCGTAAAGCATGGATCGAAAATGAGTAATCATCTAATGCACCTGCTTTGGAACATCTTTTGGTGAGATTTTGATACAGTTGGAAAGAAACTTAAAAACTTTTTTATTACAGAATTGGTTCGGGTACGTGGTCTAATGTTCAGAGGACGAGGAGACAGATGAAGAGGAGACTGCTAACGAATTGGAACCTGAATTTATTGAATAATCTAGAAAAGTGTCAAATTTTTTTCTGAAAACTGTTTTATCTTATACAAAATGTTATTTACATAAGTTTTAATAAACGTTTATTGCAATTATTGGAAAAAATATATTCATCGTAGAACCTGTAATAGAAGGGCCCCAACATTGTCAAGTTTGAGCTAATTTATCTTGGTACCAATAAAAGATAAAAAAAACCAACCTATATAAATTGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGCTGTTATGTCATGCTACCTT</pcr_primer_p1>
		<pcr_primer_p2>GATGATTACTCATTTTCGATCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGCTGTTATGTCATGCTACCTTTCATTCGTCTTGATGCTACTTTACTTTTTCACAAGAGCCTGTTACGAACATCCTCTGAGAGTCAGCGCCAAGTCTCCAGTTCTCACACTTCAATTGTACAGTGTCATCAAAGAAGCTGAGCTTCAAGCATATGATATTTATGGAGGGGAGGAGCTGAGTAAAATGCAAATCGAGCACATTTCAAAGGAAGCTGCTCGTAAAGCATGGATCGAAAATGAGTAATCATC</canonical_amplicon>
		<polymorphic_amplicon>TAGCTGTTATGTCATGCTACCTTTCATTCGTCTTGATGCTACTTTACTTTTTCACAAGAGCCTGTTACGAACATCCTCTGAGAGTCAGCGCCAAGTCTCCAGTTCTCACACTTCAATTGTACAGTGTCAYCAAAGAAGCTGAGCTTCAAGCATATGATATTTATGGAGGGGAGGAGCTGAGTAAAATGCAAATCGAGCACATTTCAAAGGAAGCTGCTCGTAAAGCATGGATCGAAAATGAGTAATCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30278</snp_id>
        <super_contig>c005300880.Contig1</super_contig>
        <contig_pos>1186835</contig_pos>
        <strand>+</strand>
        <context>GCTGCTCGTA[A/G]AGCATGGATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAGCTGAGTAAAATGCAAATCGAGCACATTTCAAAGGAAGCTGCTCGTA</left_flank>
        <right_flank>AGCATGGATCGAAAATGAGTAATCATCTAATGCACCTGCTTTGGAACATC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACCAATGAACCTCTTCTTCTACGTCAGTAACTTTTCGTGTGTACCCGGAAAGCCAATCCCTCCCGGATTTCAATTCAGTTACTGTTCTGAGATATCTAATACAGTCGCCTATTTAGGAGTTGTTAACAGCTGTGGAGACATCCAGAACATTCACAAATATTCAAAATGTCGCAGAGATTCTGATTGTTATCCTGGTTACATTTGCGTACGGACCATTGACGAAGGAATGTGCTTCAAGAATCCAGAAGACTGTTCCAACTCCCCATACTATTACATAGCTGTTATGTCATGCTACCTTTCATTCGTCTTGATGCTACTTTACTTTTTCACAAGAGCCTGTTACGAACATCCTCTGAGAGTCAGCGCCAAGTCTCCAGTTCTCACACTTCAATTGTACAGTGTCATCAAAGAAGCTGAGCTTCAAGCATATGATATTTATGGAGGGGAGGAGCTGAGTAAAATGCAAATCGAGCACATTTCAAAGGAAGCTGCTCGTAAAGCATGGATCGAAAATGAGTAATCATCTAATGCACCTGCTTTGGAACATCTTTTGGTGAGATTTTGATACAGTTGGAAAGAAACTTAAAAACTTTTTTATTACAGAATTGGTTCGGGTACGTGGTCTAATGTTCAGAGGACGAGGAGACAGATGAAGAGGAGACTGCTAACGAATTGGAACCTGAATTTATTGAATAATCTAGAAAAGTGTCAAATTTTTTTCTGAAAACTGTTTTATCTTATACAAAATGTTATTTACATAAGTTTTAATAAACGTTTATTGCAATTATTGGAAAAAATATATTCATCGTAGAACCTGTAATAGAAGGGCCCCAACATTGTCAAGTTTGAGCTAATTTATCTTGGTACCAATAAAAGATAAAAAAAACCAACCTATATAAATTGACCCAAAAAATTGAAAGTTAGGGGGCTTTTCTATTAAATGTTTTACGGCATTTTATAATGAAACCTTCTCACTAAATTTATACTTGATTTTTTCA</canonical>
            <polymorphic>TAACCAATGAACCTCTTCTTCTACGTCAGTAACTTTTCGTGTGTACCCGGAAAGCCAATCCCTCCCGGATTTCAATTCAGTTACTGTTCTGAGATATCTAATACAGTCGCCTATTTAGGAGTTGTTAACAGCTGTGGAGACATCCAGAACATTCACAAATATTCAAAATGTCGCAGAGATTCTGATTGTTATCCTGGTTACATTTGCGTACGGACCATTGACGAAGGAATGTGCTTCAAGAATCCAGAAGACTGTTCCAACTCCCCATACTATTACATAGCTGTTATGTCATGCTACCTTTCATTCGTCTTGATGCTACTTTACTTTTTCACAAGAGCCTGTTACGAACATCCTCTGAGAGTCAGCGCCAAGTCTCCAGTTCTCACACTTCAATTGTACAGTGTCATCAAAGAAGCTGAGCTTCAAGCATATGATATTTATGGAGGGGAGGAGCTGAGTAAAATGCAAATCGAGCACATTTCAAAGGAAGCTGCTCGTARAGCATGGATCGAAAATGAGTAATCATCTAATGCACCTGCTTTGGAACATCTTTTGGTGAGATTTTGATACAGTTGGAAAGAAACTTAAAAACTTTTTTATTACAGAATTGGTTCGGGTACGTGGTCTAATGTTCAGAGGACGAGGAGACAGATGAAGAGGAGACTGCTAACGAATTGGAACCTGAATTTATTGAATAATCTAGAAAAGTGTCAAATTTTTTTCTGAAAACTGTTTTATCTTATACAAAATGTTATTTACATAAGTTTTAATAAACGTTTATTGCAATTATTGGAAAAAATATATTCATCGTAGAACCTGTAATAGAAGGGCCCCAACATTGTCAAGTTTGAGCTAATTTATCTTGGTACCAATAAAAGATAAAAAAAACCAACCTATATAAATTGACCCAAAAAATTGAAAGTTAGGGGGCTTTTCTATTAAATGTTTTACGGCATTTTATAATGAAACCTTCTCACTAAATTTATACTTGATTTTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGCTTCAAGCATATGATATTT</pcr_primer_p1>
		<pcr_primer_p2>CAGTCTCCTCTTCATCTGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAGCTTCAAGCATATGATATTTATGGAGGGGAGGAGCTGAGTAAAATGCAAATCGAGCACATTTCAAAGGAAGCTGCTCGTAAAGCATGGATCGAAAATGAGTAATCATCTAATGCACCTGCTTTGGAACATCTTTTGGTGAGATTTTGATACAGTTGGAAAGAAACTTAAAAACTTTTTTATTACAGAATTGGTTCGGGTACGTGGTCTAATGTTCAGAGGACGAGGAGACAGATGAAGAGGAGACTG</canonical_amplicon>
		<polymorphic_amplicon>TGAGCTTCAAGCATATGATATTTATGGAGGGGAGGAGCTGAGTAAAATGCAAATCGAGCACATTTCAAAGGAAGCTGCTCGTARAGCATGGATCGAAAATGAGTAATCATCTAATGCACCTGCTTTGGAACATCTTTTGGTGAGATTTTGATACAGTTGGAAAGAAACTTAAAAACTTTTTTATTACAGAATTGGTTCGGGTACGTGGTCTAATGTTCAGAGGACGAGGAGACAGATGAAGAGGAGACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30279</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>27936</contig_pos>
        <strand>+</strand>
        <context>CCTTCCACCT[C/G]YTGATYCGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCT</left_flank>
        <right_flank>CTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTGTTTGAAATTTCAGAGTTTCTAGGATTTTTCGGGAAAACTCAAAATTTAGAAATTTGTAAAACTTGGAATTTTTTGAAAATTTGCAAAATTCAGATTTTTTAGAATTCTTGATTTTCTATTTTTTGAAAATTTCGAAAAGTTGAAAAAGAAATTTTTTTAAATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGA</canonical>
            <polymorphic>TATTTGTTTGAAATTTCAGAGTTTCTAGGATTTTTCGGGAAAACTCAAAATTTAGAAATTTGTAAAACTTGGAATTTTTTGAAAATTTGCAAAATTCAGATTTTTTAGAATTCTTGATTTTCTATTTTTTGAAAATTTCGAAAAGTTGAAAAAGAAATTTTTTTAAATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTSCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACCATCAACAAGATCATTC</pcr_primer_p1>
		<pcr_primer_p2>CAGAGTTTAAGTCGATTTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>GAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTG</canonical_amplicon>
		<polymorphic_amplicon>GAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTSCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30280</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>27937</contig_pos>
        <strand>+</strand>
        <context>CTTCCACCTS[C/T]TGATYCGAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTG</left_flank>
        <right_flank>TGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGTTTGAAATTTCAGAGTTTCTAGGATTTTTCGGGAAAACTCAAAATTTAGAAATTTGTAAAACTTGGAATTTTTTGAAAATTTGCAAAATTCAGATTTTTTAGAATTCTTGATTTTCTATTTTTTGAAAATTTCGAAAAGTTGAAAAAGAAATTTTTTTAAATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGAT</canonical>
            <polymorphic>ATTTGTTTGAAATTTCAGAGTTTCTAGGATTTTTCGGGAAAACTCAAAATTTAGAAATTTGTAAAACTTGGAATTTTTTGAAAATTTGCAAAATTCAGATTTTTTAGAATTCTTGATTTTCTATTTTTTGAAAATTTCGAAAAGTTGAAAAAGAAATTTTTTTAAATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGYTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACCATCAACAAGATCATTC</pcr_primer_p1>
		<pcr_primer_p2>CAGAGTTTAAGTCGATTTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>GAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTG</canonical_amplicon>
		<polymorphic_amplicon>GAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGYTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30281</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>27942</contig_pos>
        <strand>+</strand>
        <context>ACCTSYTGAT[C/T]CGAACCCTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGAT</left_flank>
        <right_flank>CGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAAATTTCAGAGTTTCTAGGATTTTTCGGGAAAACTCAAAATTTAGAAATTTGTAAAACTTGGAATTTTTTGAAAATTTGCAAAATTCAGATTTTTTAGAATTCTTGATTTTCTATTTTTTGAAAATTTCGAAAAGTTGAAAAAGAAATTTTTTTAAATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGC</canonical>
            <polymorphic>TTTGAAATTTCAGAGTTTCTAGGATTTTTCGGGAAAACTCAAAATTTAGAAATTTGTAAAACTTGGAATTTTTTGAAAATTTGCAAAATTCAGATTTTTTAGAATTCTTGATTTTCTATTTTTTGAAAATTTCGAAAAGTTGAAAAAGAAATTTTTTTAAATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATYCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>448 268 186 50 48</canonical_bands>
                <polymorphic_bands>448 316 186 50</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>214 199 195 168 89 80 23 20 12</canonical_bands>
                <polymorphic_bands>303 199 195 168 80 23 20 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATCATTCTGTCCCAACCT</pcr_primer_p1>
		<pcr_primer_p2>CAGAGTTTAAGTCGATTTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>AGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTG</canonical_amplicon>
		<polymorphic_amplicon>AGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATYCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30282</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>27960</contig_pos>
        <strand>+</strand>
        <context>TAAGACGTAC[A/T]CGAGACGAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTAC</left_flank>
        <right_flank>CGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAGGATTTTTCGGGAAAACTCAAAATTTAGAAATTTGTAAAACTTGGAATTTTTTGAAAATTTGCAAAATTCAGATTTTTTAGAATTCTTGATTTTCTATTTTTTGAAAATTTCGAAAAGTTGAAAAAGAAATTTTTTTAAATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAA</canonical>
            <polymorphic>CTAGGATTTTTCGGGAAAACTCAAAATTTAGAAATTTGTAAAACTTGGAATTTTTTGAAAATTTGCAAAATTCAGATTTTTTAGAATTCTTGATTTTCTATTTTTTGAAAATTTCGAAAAGTTGAAAAAGAAATTTTTTTAAATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACWCGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>174 156 144 99 78 76 66 55 28 24 22 18 15 15 11 7 7 3 2</canonical_bands>
                <polymorphic_bands>174 156 144 99 78 76 66 55 50 24 18 15 15 11 7 7 3 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 344 154</canonical_bands>
                <polymorphic_bands>846 154</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGTCCCAACCTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CAGAGTTTAAGTCGATTTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTG</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACWCGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30283</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>27987</contig_pos>
        <strand>+</strand>
        <context>AGGGTGATGC[A/C]TCGTTGGAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGC</left_flank>
        <right_flank>TCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAGAAATTTGTAAAACTTGGAATTTTTTGAAAATTTGCAAAATTCAGATTTTTTAGAATTCTTGATTTTCTATTTTTTGAAAATTTCGAAAAGTTGAAAAAGAAATTTTTTTAAATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAAGCTGAATCGATCGGATGAGGAAACTGG</canonical>
            <polymorphic>TTAGAAATTTGTAAAACTTGGAATTTTTTGAAAATTTGCAAAATTCAGATTTTTTAGAATTCTTGATTTTCTATTTTTTGAAAATTTCGAAAAGTTGAAAAAGAAATTTTTTTAAATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCMTCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAAGCTGAATCGATCGGATGAGGAAACTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATGCAT</site>
                <isoschizomers>
                    <enzyme>BfrBI</enzyme>
                    <enzyme>EcoT22I</enzyme>
                    <enzyme>Mph1103I</enzyme>
                    <enzyme>NsiI</enzyme>
                    <enzyme>Ppu10I</enzyme>
                    <enzyme>Zsp2I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>502 363 97 38</canonical_bands>
                <polymorphic_bands>865 97 38</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGTCCCAACCTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CAGAGTTTAAGTCGATTTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTG</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCMTCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30284</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>28014</contig_pos>
        <strand>+</strand>
        <context>ACACTCAATT[A/G]GAGGGAACAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATT</left_flank>
        <right_flank>GAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAAAATTTGCAAAATTCAGATTTTTTAGAATTCTTGATTTTCTATTTTTTGAAAATTTCGAAAAGTTGAAAAAGAAATTTTTTTAAATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAAGCTGAATCGATCGGATGAGGAAACTGGAAGACCCGGATACTCGTACATCTTTGA</canonical>
            <polymorphic>TTGAAAATTTGCAAAATTCAGATTTTTTAGAATTCTTGATTTTCTATTTTTTGAAAATTTCGAAAAGTTGAAAAAGAAATTTTTTTAAATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTRGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAAGCTGAATCGATCGGATGAGGAAACTGGAAGACCCGGATACTCGTACATCTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>505 392 103</canonical_bands>
                <polymorphic_bands>897 103</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGTCCCAACCTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CAGAGTTTAAGTCGATTTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTG</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTRGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30285</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>28026</contig_pos>
        <strand>+</strand>
        <context>AGGGAACAAC[A/G]GAYTCAGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAAC</left_flank>
        <right_flank>GACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTCAGATTTTTTAGAATTCTTGATTTTCTATTTTTTGAAAATTTCGAAAAGTTGAAAAAGAAATTTTTTTAAATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAAGCTGAATCGATCGGATGAGGAAACTGGAAGACCCGGATACTCGTACATCTTTGAATCCTTCTTCGA</canonical>
            <polymorphic>AAAATTCAGATTTTTTAGAATTCTTGATTTTCTATTTTTTGAAAATTTCGAAAAGTTGAAAAAGAAATTTTTTTAAATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACRGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAAGCTGAATCGATCGGATGAGGAAACTGGAAGACCCGGATACTCGTACATCTTTGAATCCTTCTTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGTCCCAACCTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CAGAGTTTAAGTCGATTTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTG</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACRGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30286</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>28029</contig_pos>
        <strand>+</strand>
        <context>GAACAACRGA[C/T]TCAGAATTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGA</left_flank>
        <right_flank>TCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCAGATTTTTTAGAATTCTTGATTTTCTATTTTTTGAAAATTTCGAAAAGTTGAAAAAGAAATTTTTTTAAATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAAGCTGAATCGATCGGATGAGGAAACTGGAAGACCCGGATACTCGTACATCTTTGAATCCTTCTTCGATGA</canonical>
            <polymorphic>ATTCAGATTTTTTAGAATTCTTGATTTTCTATTTTTTGAAAATTTCGAAAAGTTGAAAAAGAAATTTTTTTAAATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGAYTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAAGCTGAATCGATCGGATGAGGAAACTGGAAGACCCGGATACTCGTACATCTTTGAATCCTTCTTCGATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>420 258 164 80 78</canonical_bands>
                <polymorphic_bands>420 258 244 78</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGTCCCAACCTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CAGAGTTTAAGTCGATTTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTG</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGAYTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30287</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>28041</contig_pos>
        <strand>+</strand>
        <context>CAGAATTGAC[C/T]CAAAAACTWY</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGAC</left_flank>
        <right_flank>CAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGAATTCTTGATTTTCTATTTTTTGAAAATTTCGAAAAGTTGAAAAAGAAATTTTTTTAAATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAAGCTGAATCGATCGGATGAGGAAACTGGAAGACCCGGATACTCGTACATCTTTGAATCCTTCTTCGATGACGTGGCTCCTGA</canonical>
            <polymorphic>TAGAATTCTTGATTTTCTATTTTTTGAAAATTTCGAAAAGTTGAAAAAGAAATTTTTTTAAATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACYCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAAGCTGAATCGATCGGATGAGGAAACTGGAAGACCCGGATACTCGTACATCTTTGAATCCTTCTTCGATGACGTGGCTCCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>322 227 199 164 49 28 11</canonical_bands>
                <polymorphic_bands>322 227 210 164 49 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGTCCCAACCTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CAGAGTTTAAGTCGATTTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTG</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACYCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30288</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>28050</contig_pos>
        <strand>+</strand>
        <context>CYCAAAAACT[A/T]YTGAAAGCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACT</left_flank>
        <right_flank>CTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATTTTCTATTTTTTGAAAATTTCGAAAAGTTGAAAAAGAAATTTTTTTAAATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAAGCTGAATCGATCGGATGAGGAAACTGGAAGACCCGGATACTCGTACATCTTTGAATCCTTCTTCGATGACGTGGCTCCTGAAGGCCAACT</canonical>
            <polymorphic>TGATTTTCTATTTTTTGAAAATTTCGAAAAGTTGAAAAAGAAATTTTTTTAAATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTWCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAAGCTGAATCGATCGGATGAGGAAACTGGAAGACCCGGATACTCGTACATCTTTGAATCCTTCTTCGATGACGTGGCTCCTGAAGGCCAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>214 199 199 179 89 77 23 20</canonical_bands>
                <polymorphic_bands>214 199 199 179 89 77 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGTCCCAACCTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CAGAGTTTAAGTCGATTTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTG</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTWCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30289</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>28051</contig_pos>
        <strand>+</strand>
        <context>YCAAAAACTW[C/T]TGAAAGCTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTT</left_flank>
        <right_flank>TGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTTCTATTTTTTGAAAATTTCGAAAAGTTGAAAAAGAAATTTTTTTAAATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAAGCTGAATCGATCGGATGAGGAAACTGGAAGACCCGGATACTCGTACATCTTTGAATCCTTCTTCGATGACGTGGCTCCTGAAGGCCAACTC</canonical>
            <polymorphic>GATTTTCTATTTTTTGAAAATTTCGAAAAGTTGAAAAAGAAATTTTTTTAAATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTYTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAAGCTGAATCGATCGGATGAGGAAACTGGAAGACCCGGATACTCGTACATCTTTGAATCCTTCTTCGATGACGTGGCTCCTGAAGGCCAACTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>214 199 199 178 89 78 23 20</canonical_bands>
                <polymorphic_bands>214 199 199 178 89 78 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGTCCCAACCTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CAGAGTTTAAGTCGATTTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTG</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTYTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30290</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>28087</contig_pos>
        <strand>+</strand>
        <context>AAATGCCACA[A/C]AAACMAYAGR</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACA</left_flank>
        <right_flank>AAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAAATTTTTTTAAATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAAGCTGAATCGATCGGATGAGGAAACTGGAAGACCCGGATACTCGTACATCTTTGAATCCTTCTTCGATGACGTGGCTCCTGAAGGCCAACTCATCTTTTCGCCCTCTAAAATGTTGAAGATTCGAACA</canonical>
            <polymorphic>AAGAAATTTTTTTAAATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACAMAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAAGCTGAATCGATCGGATGAGGAAACTGGAAGACCCGGATACTCGTACATCTTTGAATCCTTCTTCGATGACGTGGCTCCTGAAGGCCAACTCATCTTTTCGCCCTCTAAAATGTTGAAGATTCGAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>174 149 144 99 78 66 55 54 29 28 24 22 18 15 15 11 7 7 3 2</canonical_bands>
                <polymorphic_bands>174 149 144 99 78 66 55 54 29 28 24 22 18 15 15 11 9 7 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGTCCCAACCTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CAGAGTTTAAGTCGATTTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTG</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACAMAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30291</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>28092</contig_pos>
        <strand>+</strand>
        <context>CCACAMAAAC[A/C]AYAGRTKCMG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAAC</left_flank>
        <right_flank>ACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTTTAAATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAAGCTGAATCGATCGGATGAGGAAACTGGAAGACCCGGATACTCGTACATCTTTGAATCCTTCTTCGATGACGTGGCTCCTGAAGGCCAACTCATCTTTTCGCCCTCTAAAATGTTGAAGATTCGAACAATGCT</canonical>
            <polymorphic>ATTTTTTTAAATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACMACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAAGCTGAATCGATCGGATGAGGAAACTGGAAGACCCGGATACTCGTACATCTTTGAATCCTTCTTCGATGACGTGGCTCCTGAAGGCCAACTCATCTTTTCGCCCTCTAAAATGTTGAAGATTCGAACAATGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>174 149 144 99 78 66 59 55 28 24 24 22 18 15 15 11 7 7 3 2</canonical_bands>
                <polymorphic_bands>181 149 144 99 78 66 59 55 28 24 24 22 18 15 15 11 7 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGTCCCAACCTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CAGAGTTTAAGTCGATTTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTG</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACMACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30292</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>28094</contig_pos>
        <strand>+</strand>
        <context>ACAMAAACMA[C/T]AGRTKCMGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCA</left_flank>
        <right_flank>AGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTAAATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAAGCTGAATCGATCGGATGAGGAAACTGGAAGACCCGGATACTCGTACATCTTTGAATCCTTCTTCGATGACGTGGCTCCTGAAGGCCAACTCATCTTTTCGCCCTCTAAAATGTTGAAGATTCGAACAATGCTCC</canonical>
            <polymorphic>TTTTTTAAATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCAYAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAAGCTGAATCGATCGGATGAGGAAACTGGAAGACCCGGATACTCGTACATCTTTGAATCCTTCTTCGATGACGTGGCTCCTGAAGGCCAACTCATCTTTTCGCCCTCTAAAATGTTGAAGATTCGAACAATGCTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>174 149 144 99 78 66 61 55 28 24 22 22 18 15 15 11 7 7 3 2</canonical_bands>
                <polymorphic_bands>181 149 144 99 78 66 61 55 28 24 22 22 18 15 15 11 7 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGTCCCAACCTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CAGAGTTTAAGTCGATTTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTG</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCAYAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30293</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>28097</contig_pos>
        <strand>+</strand>
        <context>MAAACMAYAG[A/G]TKCMGAAGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAG</left_flank>
        <right_flank>TGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAAATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAAGCTGAATCGATCGGATGAGGAAACTGGAAGACCCGGATACTCGTACATCTTTGAATCCTTCTTCGATGACGTGGCTCCTGAAGGCCAACTCATCTTTTCGCCCTCTAAAATGTTGAAGATTCGAACAATGCTCCCAT</canonical>
            <polymorphic>TTTAAATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGRTGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAAGCTGAATCGATCGGATGAGGAAACTGGAAGACCCGGATACTCGTACATCTTTGAATCCTTCTTCGATGACGTGGCTCCTGAAGGCCAACTCATCTTTTCGCCCTCTAAAATGTTGAAGATTCGAACAATGCTCCCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGTCCCAACCTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>ACAGAGTTTAAGTCGATTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGT</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGRTGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30294</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>28099</contig_pos>
        <strand>+</strand>
        <context>AACMAYAGRT[G/T]CMGAAGAGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGAT</left_flank>
        <right_flank>CCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAAGCTGAATCGATCGGATGAGGAAACTGGAAGACCCGGATACTCGTACATCTTTGAATCCTTCTTCGATGACGTGGCTCCTGAAGGCCAACTCATCTTTTCGCCCTCTAAAATGTTGAAGATTCGAACAATGCTCCCATTT</canonical>
            <polymorphic>TAAATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATKCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAAGCTGAATCGATCGGATGAGGAAACTGGAAGACCCGGATACTCGTACATCTTTGAATCCTTCTTCGATGACGTGGCTCCTGAAGGCCAACTCATCTTTTCGCCCTCTAAAATGTTGAAGATTCGAACAATGCTCCCATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGTCCCAACCTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CAACAGAGTTTAAGTCGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTG</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATKCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30295</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>28101</contig_pos>
        <strand>+</strand>
        <context>CMAYAGRTKC[A/C]GAAGAGACMY</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGC</left_flank>
        <right_flank>GAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAAGCTGAATCGATCGGATGAGGAAACTGGAAGACCCGGATACTCGTACATCTTTGAATCCTTCTTCGATGACGTGGCTCCTGAAGGCCAACTCATCTTTTCGCCCTCTAAAATGTTGAAGATTCGAACAATGCTCCCATTTTT</canonical>
            <polymorphic>AATATAAAAAGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCMGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAAGCTGAATCGATCGGATGAGGAAACTGGAAGACCCGGATACTCGTACATCTTTGAATCCTTCTTCGATGACGTGGCTCCTGAAGGCCAACTCATCTTTTCGCCCTCTAAAATGTTGAAGATTCGAACAATGCTCCCATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAGAGCTGAACACTCAAT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTAGCTGCTCCAGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>GGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCMGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30296</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>28110</contig_pos>
        <strand>+</strand>
        <context>CMGAAGAGAC[A/C]YCCTGGCTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGAC</left_flank>
        <right_flank>TCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAAGCTGAATCGATCGGATGAGGAAACTGGAAGACCCGGATACTCGTACATCTTTGAATCCTTCTTCGATGACGTGGCTCCTGAAGGCCAACTCATCTTTTCGCCCTCTAAAATGTTGAAGATTCGAACAATGCTCCCATTTTTAAAGGATTT</canonical>
            <polymorphic>AGTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACMTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAAGCTGAATCGATCGGATGAGGAAACTGGAAGACCCGGATACTCGTACATCTTTGAATCCTTCTTCGATGACGTGGCTCCTGAAGGCCAACTCATCTTTTCGCCCTCTAAAATGTTGAAGATTCGAACAATGCTCCCATTTTTAAAGGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAGAGCTGAACACTCAAT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTAGCTGCTCCAGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>GGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACMTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30297</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>28111</contig_pos>
        <strand>+</strand>
        <context>MGAAGAGACM[C/T]CCTGGCTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACC</left_flank>
        <right_flank>CCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAAGCTGAATCGATCGGATGAGGAAACTGGAAGACCCGGATACTCGTACATCTTTGAATCCTTCTTCGATGACGTGGCTCCTGAAGGCCAACTCATCTTTTCGCCCTCTAAAATGTTGAAGATTCGAACAATGCTCCCATTTTTAAAGGATTTG</canonical>
            <polymorphic>GTCCACAATTGCAAAACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCYCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAAGCTGAATCGATCGGATGAGGAAACTGGAAGACCCGGATACTCGTACATCTTTGAATCCTTCTTCGATGACGTGGCTCCTGAAGGCCAACTCATCTTTTCGCCCTCTAAAATGTTGAAGATTCGAACAATGCTCCCATTTTTAAAGGATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAGAGCTGAACACTCAAT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTAGCTGCTCCAGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>GGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCYCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30298</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>28125</contig_pos>
        <strand>+</strand>
        <context>GGCTCCAAAA[A/G]ATCTCAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAA</left_flank>
        <right_flank>ATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAAGCTGAATCGATCGGATGAGGAAACTGGAAGACCCGGATACTCGTACATCTTTGAATCCTTCTTCGATGACGTGGCTCCTGAAGGCCAACTCATCTTTTCGCCCTCTAAAATGTTGAAGATTCGAACAATGCTCCCATTTTTAAAGGATTTGGAAAGTGTGGAAGA</canonical>
            <polymorphic>AACCTTTTATGAAAAAAAAAACCTTTCATCTACCAAAATACCCGGTCCAAAAAGCCACGGCCCCTTTTACTTATTTTTCAAATTCTCCATTTTTCTTTGTTTCAGAACTCTACCTAAACCCCCTCTACGCCGAATTCGACGAACCATCCAAAACCACCATTGACAACTTGTATCGCCTAAAAGGTCTCCGCGTTTTGGAATTCTATCAAGCCCTCAACGAATTGTACCTAACTGGAGGATTCGAGAAATCTGGAACCATCAACAAGATCATTCTGTCCCAACCTGAAATCCCCAATGACACCTTCCACCTGCTGATCCGAACCCTAAGACGTACACGAGACGAGTTAAAGGAGGGTGATGCATCGTTGGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAARATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAGCCAAATTGGATTCTGGAGACTTCAAAAAGATCAGCAGTGCCACTCAGAACGCTTTCTACACTGGCGTCGGGGGTGTCGATGATGTGAGAGCTACTGTAGTGGGCGGAGCCCGATTGATTTACAATATGGGACTAGACAATGGAAAGGAACAATGTGTCAAGCTCAAAAATGCCGTTTCAACTGATATCAAGTTTTATAAACGGCTAGATTGGGCGATGGAGATTGTAAAGAAGCTGAATCGATCGGATGAGGAAACTGGAAGACCCGGATACTCGTACATCTTTGAATCCTTCTTCGATGACGTGGCTCCTGAAGGCCAACTCATCTTTTCGCCCTCTAAAATGTTGAAGATTCGAACAATGCTCCCATTTTTAAAGGATTTGGAAAGTGTGGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAGAGCTGAACACTCAAT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTAGCTGCTCCAGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>GGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAAAATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GGAAGAGCTGAACACTCAATTGGAGGGAACAACAGACTCAGAATTGACTCAAAAACTTCTGAAAGCTGTCAAGCTTGCCGTCAGAAATGCCACACAAACCACAGATGCCGAAGAGACCTCCTGGCTCCAAAARATCTCAAAAATCGACTTAAACTCTGTTGAAGACCTGAAGGCCCTGAATGAAGGAAACGGAGAGGACGCTAAGCTCCTCGCTGATCTTCTGGAGCAGCTAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30299</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>32257</contig_pos>
        <strand>+</strand>
        <context>GATATCGWGA[A/T]GAATCARMRA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGA</left_flank>
        <right_flank>GAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGATTTTCATGAAATATGTAAAAAAATGAATTTTAGAGAATTCATCTACCGTAAAACCTGTATTAGAAGGGCCGGTCTATGAGAGGGGCTTTTCTATTACGGGGGCCCTTCTATTACAGGGGCCCTTCTAATACATGACCTACGGTAATTGTTCAATGAACATTTTCGGAAAAAATGGCCGGAAACAAAGAAAGGCCATCCAGAAGTTTCTTGTACCAATAGACGGGCCGGCCCTTCTAATAGAGATTTTACAGTAATTCAAAGAATTATTTTCAGATAAAATTCTCCAGCTCTCCGTTGATCGTATGGAAAAAATCGCAAGAATCACATATGGAATTTATGTTCAAAAAGGATTAACCGACGGTGAAATTTCCATTGACGAGATTTTCAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTCCGAAGGTTGAGAGCTTCTTGGAATATTGTGGAAAATTGGATGAGGCATTCGTATTTCTAACGGGCAGGAAGAATTTGGATGACGCTGCGGATAAACTTTTAGCCACCGGATACTTTTCGGTTTTAAAAAATCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATCAAGACGTCAAGACTGTCTTCGGTATCAAAAGTGTCAAGGATCCATTATCAGTGATTTTCCAAGCCACGGATGCTTCCAAAGAATTCAATAAACAAACCAAATCGTTTACTGTAGATCCTGATGCTAGAAACAAGAATTTTGAGAATTTCAAGGATATTTGGGAATATTCTCAAAAGTCTAATACAA</canonical>
            <polymorphic>TAGATTTTCATGAAATATGTAAAAAAATGAATTTTAGAGAATTCATCTACCGTAAAACCTGTATTAGAAGGGCCGGTCTATGAGAGGGGCTTTTCTATTACGGGGGCCCTTCTATTACAGGGGCCCTTCTAATACATGACCTACGGTAATTGTTCAATGAACATTTTCGGAAAAAATGGCCGGAAACAAAGAAAGGCCATCCAGAAGTTTCTTGTACCAATAGACGGGCCGGCCCTTCTAATAGAGATTTTACAGTAATTCAAAGAATTATTTTCAGATAAAATTCTCCAGCTCTCCGTTGATCGTATGGAAAAAATCGCAAGAATCACATATGGAATTTATGTTCAAAAAGGATTAACCGACGGTGAAATTTCCATTGACGAGATTTTCAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAWGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTCCGAAGGTTGAGAGCTTCTTGGAATATTGTGGAAAATTGGATGAGGCATTCGTATTTCTAACGGGCAGGAAGAATTTGGATGACGCTGCGGATAAACTTTTAGCCACCGGATACTTTTCGGTTTTAAAAAATCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATCAAGACGTCAAGACTGTCTTCGGTATCAAAAGTGTCAAGGATCCATTATCAGTGATTTTCCAAGCCACGGATGCTTCCAAAGAATTCAATAAACAAACCAAATCGTTTACTGTAGATCCTGATGCTAGAAACAAGAATTTTGAGAATTTCAAGGATATTTGGGAATATTCTCAAAAGTCTAATACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATCAAGAATCTGAATCAAG</pcr_primer_p1>
		<pcr_primer_p2>GAAGATCGATTTCCTTATCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTC</canonical_amplicon>
		<polymorphic_amplicon>CAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAWGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30300</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>32279</contig_pos>
        <strand>+</strand>
        <context>ATTTYCTRGC[C/T]YTGGAAGCWA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGC</left_flank>
        <right_flank>CTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATGAATTTTAGAGAATTCATCTACCGTAAAACCTGTATTAGAAGGGCCGGTCTATGAGAGGGGCTTTTCTATTACGGGGGCCCTTCTATTACAGGGGCCCTTCTAATACATGACCTACGGTAATTGTTCAATGAACATTTTCGGAAAAAATGGCCGGAAACAAAGAAAGGCCATCCAGAAGTTTCTTGTACCAATAGACGGGCCGGCCCTTCTAATAGAGATTTTACAGTAATTCAAAGAATTATTTTCAGATAAAATTCTCCAGCTCTCCGTTGATCGTATGGAAAAAATCGCAAGAATCACATATGGAATTTATGTTCAAAAAGGATTAACCGACGGTGAAATTTCCATTGACGAGATTTTCAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTCCGAAGGTTGAGAGCTTCTTGGAATATTGTGGAAAATTGGATGAGGCATTCGTATTTCTAACGGGCAGGAAGAATTTGGATGACGCTGCGGATAAACTTTTAGCCACCGGATACTTTTCGGTTTTAAAAAATCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATCAAGACGTCAAGACTGTCTTCGGTATCAAAAGTGTCAAGGATCCATTATCAGTGATTTTCCAAGCCACGGATGCTTCCAAAGAATTCAATAAACAAACCAAATCGTTTACTGTAGATCCTGATGCTAGAAACAAGAATTTTGAGAATTTCAAGGATATTTGGGAATATTCTCAAAAGTCTAATACAAATATTCAAGCTCTAAAATCAAT</canonical>
            <polymorphic>AAAAATGAATTTTAGAGAATTCATCTACCGTAAAACCTGTATTAGAAGGGCCGGTCTATGAGAGGGGCTTTTCTATTACGGGGGCCCTTCTATTACAGGGGCCCTTCTAATACATGACCTACGGTAATTGTTCAATGAACATTTTCGGAAAAAATGGCCGGAAACAAAGAAAGGCCATCCAGAAGTTTCTTGTACCAATAGACGGGCCGGCCCTTCTAATAGAGATTTTACAGTAATTCAAAGAATTATTTTCAGATAAAATTCTCCAGCTCTCCGTTGATCGTATGGAAAAAATCGCAAGAATCACATATGGAATTTATGTTCAAAAAGGATTAACCGACGGTGAAATTTCCATTGACGAGATTTTCAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCYCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTCCGAAGGTTGAGAGCTTCTTGGAATATTGTGGAAAATTGGATGAGGCATTCGTATTTCTAACGGGCAGGAAGAATTTGGATGACGCTGCGGATAAACTTTTAGCCACCGGATACTTTTCGGTTTTAAAAAATCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATCAAGACGTCAAGACTGTCTTCGGTATCAAAAGTGTCAAGGATCCATTATCAGTGATTTTCCAAGCCACGGATGCTTCCAAAGAATTCAATAAACAAACCAAATCGTTTACTGTAGATCCTGATGCTAGAAACAAGAATTTTGAGAATTTCAAGGATATTTGGGAATATTCTCAAAAGTCTAATACAAATATTCAAGCTCTAAAATCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>139 132 118 96 90 89 59 56 50 45 32 17 17 17 17 13 9 4</canonical_bands>
                <polymorphic_bands>139 132 118 99 96 89 59 56 50 45 32 17 17 17 17 13 4</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>233 195 179 109 91 62 58 29 28 8 8</canonical_bands>
                <polymorphic_bands>233 195 179 109 91 86 62 29 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAATCAAGAATCTGAATCAAG</pcr_primer_p1>
		<pcr_primer_p2>GAAGATCGATTTCCTTATCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTC</canonical_amplicon>
		<polymorphic_amplicon>CAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCYCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30301</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>32280</contig_pos>
        <strand>+</strand>
        <context>TTTYCTRGCY[C/T]TGGAAGCWAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCT</left_flank>
        <right_flank>TGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGG</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATGAATTTTAGAGAATTCATCTACCGTAAAACCTGTATTAGAAGGGCCGGTCTATGAGAGGGGCTTTTCTATTACGGGGGCCCTTCTATTACAGGGGCCCTTCTAATACATGACCTACGGTAATTGTTCAATGAACATTTTCGGAAAAAATGGCCGGAAACAAAGAAAGGCCATCCAGAAGTTTCTTGTACCAATAGACGGGCCGGCCCTTCTAATAGAGATTTTACAGTAATTCAAAGAATTATTTTCAGATAAAATTCTCCAGCTCTCCGTTGATCGTATGGAAAAAATCGCAAGAATCACATATGGAATTTATGTTCAAAAAGGATTAACCGACGGTGAAATTTCCATTGACGAGATTTTCAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTCCGAAGGTTGAGAGCTTCTTGGAATATTGTGGAAAATTGGATGAGGCATTCGTATTTCTAACGGGCAGGAAGAATTTGGATGACGCTGCGGATAAACTTTTAGCCACCGGATACTTTTCGGTTTTAAAAAATCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATCAAGACGTCAAGACTGTCTTCGGTATCAAAAGTGTCAAGGATCCATTATCAGTGATTTTCCAAGCCACGGATGCTTCCAAAGAATTCAATAAACAAACCAAATCGTTTACTGTAGATCCTGATGCTAGAAACAAGAATTTTGAGAATTTCAAGGATATTTGGGAATATTCTCAAAAGTCTAATACAAATATTCAAGCTCTAAAATCAATT</canonical>
            <polymorphic>AAAATGAATTTTAGAGAATTCATCTACCGTAAAACCTGTATTAGAAGGGCCGGTCTATGAGAGGGGCTTTTCTATTACGGGGGCCCTTCTATTACAGGGGCCCTTCTAATACATGACCTACGGTAATTGTTCAATGAACATTTTCGGAAAAAATGGCCGGAAACAAAGAAAGGCCATCCAGAAGTTTCTTGTACCAATAGACGGGCCGGCCCTTCTAATAGAGATTTTACAGTAATTCAAAGAATTATTTTCAGATAAAATTCTCCAGCTCTCCGTTGATCGTATGGAAAAAATCGCAAGAATCACATATGGAATTTATGTTCAAAAAGGATTAACCGACGGTGAAATTTCCATTGACGAGATTTTCAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTYTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTCCGAAGGTTGAGAGCTTCTTGGAATATTGTGGAAAATTGGATGAGGCATTCGTATTTCTAACGGGCAGGAAGAATTTGGATGACGCTGCGGATAAACTTTTAGCCACCGGATACTTTTCGGTTTTAAAAAATCGAGGAAATTCGCTGGCTTCTGAAATGAAACTTCTGAATTCCGATCATCAAGACGTCAAGACTGTCTTCGGTATCAAAAGTGTCAAGGATCCATTATCAGTGATTTTCCAAGCCACGGATGCTTCCAAAGAATTCAATAAACAAACCAAATCGTTTACTGTAGATCCTGATGCTAGAAACAAGAATTTTGAGAATTTCAAGGATATTTGGGAATATTCTCAAAAGTCTAATACAAATATTCAAGCTCTAAAATCAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>233 195 178 109 92 62 58 29 28 8 8</canonical_bands>
                <polymorphic_bands>233 195 178 109 92 86 62 29 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAATCAAGAATCTGAATCAAG</pcr_primer_p1>
		<pcr_primer_p2>GAAGATCGATTTCCTTATCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTCTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTC</canonical_amplicon>
		<polymorphic_amplicon>CAAAATCAAGAATCTGAATCAAGTTTTCGAAGATTCTGGAGCCCTGGAAAACGAATTGAAATCTCTGGTTACTGTATCCCAATCGCTGAGAAAAAGTCCAGATATCGAGAAGAATCAGCAATATTTCCTGGCTYTGGAAGCTATTCGAAAGAAAGTTGATGGATTGGGTGATGTGGAAAAGTGGGCGGAGTCGGGAGAGATTCAGAAGATAACCCAGAGTTTGAAAGATAAGGAAATCGATCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30302</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>70449</contig_pos>
        <strand>+</strand>
        <context>AAAATTGAGG[A/G]RTATAKAYGW</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGG</left_flank>
        <right_flank>ATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAAGCTTCAAAAATCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTTGTTCTTGAATTTTTGAATCTGCAGTAACCAAAAATATAGAAATTTTTTCACCCCCATTTGAGTCCTGTGGCCAGATCATTAAAAGAAAAATTCTGAGACTTTAGCGATTTCAGAATTTCAGAAGAATTAAGATTCTGAACTTCGGAATTTTCGATTTTCAGAATTTCTAAGTTTTTGAGTTTCC</canonical>
            <polymorphic>TAAAAGCTTCAAAAATCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGRATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTTGTTCTTGAATTTTTGAATCTGCAGTAACCAAAAATATAGAAATTTTTTCACCCCCATTTGAGTCCTGTGGCCAGATCATTAAAAGAAAAATTCTGAGACTTTAGCGATTTCAGAATTTCAGAAGAATTAAGATTCTGAACTTCGGAATTTTCGATTTTCAGAATTTCTAAGTTTTTGAGTTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTCCAAATTTTGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>GAATTTTCAGGGTCTCCTACTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGRATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30303</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>70450</contig_pos>
        <strand>+</strand>
        <context>AAATTGAGGR[A/G]TATAKAYGWA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGA</left_flank>
        <right_flank>TATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGCTTCAAAAATCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTTGTTCTTGAATTTTTGAATCTGCAGTAACCAAAAATATAGAAATTTTTTCACCCCCATTTGAGTCCTGTGGCCAGATCATTAAAAGAAAAATTCTGAGACTTTAGCGATTTCAGAATTTCAGAAGAATTAAGATTCTGAACTTCGGAATTTTCGATTTTCAGAATTTCTAAGTTTTTGAGTTTCCA</canonical>
            <polymorphic>AAAAGCTTCAAAAATCGCTGGAATAAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGARTATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTTGTTCTTGAATTTTTGAATCTGCAGTAACCAAAAATATAGAAATTTTTTCACCCCCATTTGAGTCCTGTGGCCAGATCATTAAAAGAAAAATTCTGAGACTTTAGCGATTTCAGAATTTCAGAAGAATTAAGATTCTGAACTTCGGAATTTTCGATTTTCAGAATTTCTAAGTTTTTGAGTTTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTCCAAATTTTGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>GAATTTTCAGGGTCTCCTACTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGARTATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30304</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>70547</contig_pos>
        <strand>+</strand>
        <context>TGATCGTTTT[C/T]GGACTTGCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTT</left_flank>
        <right_flank>GGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTTGTTCTTGAATTTTTGAATCTGCAGTAACCAAAAATATAGAAATTTTTTCACCCCCATTTGAGTCCTGTGGCCAGATCATTAAAAGAAAAATTCTGAGACTTTAGCGATTTCAGAATTTCAGAAGAATTAAGATTCTGAACTTCGGAATTTTCGATTTTCAGAATTTCTAAGTTTTTGAGTTTCCAAATTTTAGTTTTCGATTTGCCGAATTTGTTTTTATCCCCCAATTATCTCTTAATTAACCAAAAACCCACCACCACACTATCCATTGAATAAATCACA</canonical>
            <polymorphic>TTTGTCATTTTCCAAAATGTGATTACTGTAGAAACTACAGTAATCCCAACTGCTATCGATCGAAGAATCATCAGAAATAGAGACATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATGTAAAATCCGCCAAAATAGAAAATCAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGGGTGATTAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGAAGGTAATTAAGAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGGAAGAATTTGGAGCTAGATTCACAAAATTGAGGAATATATACGTAAAATCTAGTGATGAAAATGTCAAGGAGAAGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTYGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTTGTTCTTGAATTTTTGAATCTGCAGTAACCAAAAATATAGAAATTTTTTCACCCCCATTTGAGTCCTGTGGCCAGATCATTAAAAGAAAAATTCTGAGACTTTAGCGATTTCAGAATTTCAGAAGAATTAAGATTCTGAACTTCGGAATTTTCGATTTTCAGAATTTCTAAGTTTTTGAGTTTCCAAATTTTAGTTTTCGATTTGCCGAATTTGTTTTTATCCCCCAATTATCTCTTAATTAACCAAAAACCCACCACCACACTATCCATTGAATAAATCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGTAGGAGACCCTGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTCAAGAACAAACGACAA</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>AGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTTGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTTGTTCTTGAATTT</canonical_amplicon>
		<polymorphic_amplicon>AGAAGTAGGAGACCCTGAAAATTCAATTTTTTTAAAATTTTGGGAATTTGATCGTTTTYGGACTTGCGGCGCATTTTGAATAGGTTTCAATGCCAGATTCGGGTTACACACCCCCAAACTAGATTCCAAATTTTAGCTCTTTCGCTTACAATCGTTGTTTGCGTACTTTTGAAGCTACAGTAATCCGAAAAACTCGAAAATTTTCAAAATTGAGCTAGAGAGGCCTAGTTTTTTGTGCCAATTGATAAATTCTGCGGCGATTTTGAATTTGTCGTTTGTTCTTGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30305</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>72189</contig_pos>
        <strand>+</strand>
        <context>TAGAGTCATT[C/G]CAGCCCAYGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATT</left_flank>
        <right_flank>CAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAG</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGGAAATCTAAAATTTTATAATTCTAAAATTCTAAAACTCTAAAATTCTAAAATCTATTCGATTGTAGAGCTTACAATAACCAAACTACAGTATCCAAAAAAAATCCGTATTCTAAAATCTAGATTTTTTAGGCGATGACCTAGATTTTTTTAGGTCATGACCTAGATTTTTTCAGGTCATGAATTAGAATTTTTGAAGTTTAGAATTTTGAAATTACGAAAACTGCCTTACCCAACATTCAAAACATCCCATGCAAATGGTTGTAAAACATCAGACATCCAATGTTTCGCCCAAAACGAATTCCAAGTTTTAAATGCTGCGAAAATCGCTGGAATCAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGACATTTTCCAAAATGTGATTACTGTAGAGACTACAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGG</canonical>
            <polymorphic>TTCTGGAAATCTAAAATTTTATAATTCTAAAATTCTAAAACTCTAAAATTCTAAAATCTATTCGATTGTAGAGCTTACAATAACCAAACTACAGTATCCAAAAAAAATCCGTATTCTAAAATCTAGATTTTTTAGGCGATGACCTAGATTTTTTTAGGTCATGACCTAGATTTTTTCAGGTCATGAATTAGAATTTTTGAAGTTTAGAATTTTGAAATTACGAAAACTGCCTTACCCAACATTCAAAACATCCCATGCAAATGGTTGTAAAACATCAGACATCCAATGTTTCGCCCAAAACGAATTCCAAGTTTTAAATGCTGCGAAAATCGCTGGAATCAAAAAACAAATCGAAGTTCCGGCACATGCAAAACACAACGTCTTCTCTGATTTCTTCAATCGATTCCTCATTTTTGACATTTTCCAAAATGTGATTACTGTAGAGACTACAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTSCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCAAAATGTGATTACTGTAGAGA</pcr_primer_p1>
		<pcr_primer_p2>GATCATAACAAAATTTGGAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TCCAAAATGTGATTACTGTAGAGACTACAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATC</canonical_amplicon>
		<polymorphic_amplicon>TCCAAAATGTGATTACTGTAGAGACTACAGTAATCCCAGCTGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTSCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30306</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>72651</contig_pos>
        <strand></strand>
        <context>ttagagtttt[C/T]cactcycgaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTT</left_flank>
        <right_flank>CACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGAATTAAAAACGTTGAAAACCAATGAGTCCACTGACCAGTCTGAAGGTGTGAATTTCCTCTAAATTTTTGAATTATCGAACATTTGGATTTCTGAATTGAAAAATTGAAATATGGCCACAAATAAAGGAATTACGACCATAATTATCCATTAATTAATTACCCAATTAACCAAATAACCCACCATCAGACTATCCATTGAATAAATCACAAAAAACTGATGTTGAATATAAATTTTTCGATTTTTCACCCAAATTACATACAGTATCCGGGCGTATAGAATAGCAGGAGGTACCATATAAGCAC</canonical>
            <polymorphic>TGCAATTGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTYCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGAATTAAAAACGTTGAAAACCAATGAGTCCACTGACCAGTCTGAAGGTGTGAATTTCCTCTAAATTTTTGAATTATCGAACATTTGGATTTCTGAATTGAAAAATTGAAATATGGCCACAAATAAAGGAATTACGACCATAATTATCCATTAATTAATTACCCAATTAACCAAATAACCCACCATCAGACTATCCATTGAATAAATCACAAAAAACTGATGTTGAATATAAATTTTTCGATTTTTCACCCAAATTACATACAGTATCCGGGCGTATAGAATAGCAGGAGGTACCATATAAGCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCATTCGTTGTCTAGATTTCTG</pcr_primer_p1>
		<pcr_primer_p2>TCATTTTTGGGTCACTGTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>TTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGA</canonical_amplicon>
		<polymorphic_amplicon>TTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTYCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30307</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>72657</contig_pos>
        <strand></strand>
        <context>ttttycactc[C/T]cgaaccagtc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTC</left_flank>
        <right_flank>CGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGAATTAAAAACGTTGAAAACCAATGAGTCCACTGACCAGTCTGAAGGTGTGAATTTCCTCTAAATTTTTGAATTATCGAACATTTGGATTTCTGAATTGAAAAATTGAAATATGGCCACAAATAAAGGAATTACGACCATAATTATCCATTAATTAATTACCCAATTAACCAAATAACCCACCATCAGACTATCCATTGAATAAATCACAAAAAACTGATGTTGAATATAAATTTTTCGATTTTTCACCCAAATTACATACAGTATCCGGGCGTATAGAATAGCAGGAGGTACCATATAAGCACATTGTA</canonical>
            <polymorphic>TGATCGAAGAATCATCAAAAATAGAGTCATTCCAGCCCACGGAACTAGCTTCTGGTAGTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCYCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGAATTAAAAACGTTGAAAACCAATGAGTCCACTGACCAGTCTGAAGGTGTGAATTTCCTCTAAATTTTTGAATTATCGAACATTTGGATTTCTGAATTGAAAAATTGAAATATGGCCACAAATAAAGGAATTACGACCATAATTATCCATTAATTAATTACCCAATTAACCAAATAACCCACCATCAGACTATCCATTGAATAAATCACAAAAAACTGATGTTGAATATAAATTTTTCGATTTTTCACCCAAATTACATACAGTATCCGGGCGTATAGAATAGCAGGAGGTACCATATAAGCACATTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCATTCGTTGTCTAGATTTCTG</pcr_primer_p1>
		<pcr_primer_p2>TCATTTTTGGGTCACTGTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>TTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGA</canonical_amplicon>
		<polymorphic_amplicon>TTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCYCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30308</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>72714</contig_pos>
        <strand></strand>
        <context>tgaagctaca[G/A]kaacccaaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACA</left_flank>
        <right_flank>TAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGAATTAAAAACGTTGAAAACCAATGAGTCCACTGACCAGTCTGAAGGTGTGAATTTCCTCTAAATTTTTGAATTATCGAACATTTGGATTTCTGAATTGAAAAATTGAAATATGGCCACAAATAAAGGAATTACGACCATAATTATCCATTAATTAATTACCCAATTAACCAAATAACCCACCATCAGACTATCCATTGAATAAATCACAAAAAACTGATGTTGAATATAAATTTTTCGATTTTTCACCCAAATTACATACAGTATCCGGGCGTATAGAATAGCAGGAGGTACCATATAAGCACATTGTAATAAATATTTCAAATTTTCGAAAATTCCAGAATAACTCAAATCACAACTGAAACCCG</canonical>
            <polymorphic>GTTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACARTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGAATTAAAAACGTTGAAAACCAATGAGTCCACTGACCAGTCTGAAGGTGTGAATTTCCTCTAAATTTTTGAATTATCGAACATTTGGATTTCTGAATTGAAAAATTGAAATATGGCCACAAATAAAGGAATTACGACCATAATTATCCATTAATTAATTACCCAATTAACCAAATAACCCACCATCAGACTATCCATTGAATAAATCACAAAAAACTGATGTTGAATATAAATTTTTCGATTTTTCACCCAAATTACATACAGTATCCGGGCGTATAGAATAGCAGGAGGTACCATATAAGCACATTGTAATAAATATTTCAAATTTTCGAAAATTCCAGAATAACTCAAATCACAACTGAAACCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>447 275 121 105 52</canonical_bands>
                <polymorphic_bands>568 275 105 52</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>499 380 121</canonical_bands>
                <polymorphic_bands>620 380</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCATTCGTTGTCTAGATTTCTG</pcr_primer_p1>
		<pcr_primer_p2>TCATTTTTGGGTCACTGTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>TTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGA</canonical_amplicon>
		<polymorphic_amplicon>TTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACARTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30309</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>72715</contig_pos>
        <strand></strand>
        <context>gaagctacar[T/G]aacccaaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAG</left_flank>
        <right_flank>AACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGAATTAAAAACGTTGAAAACCAATGAGTCCACTGACCAGTCTGAAGGTGTGAATTTCCTCTAAATTTTTGAATTATCGAACATTTGGATTTCTGAATTGAAAAATTGAAATATGGCCACAAATAAAGGAATTACGACCATAATTATCCATTAATTAATTACCCAATTAACCAAATAACCCACCATCAGACTATCCATTGAATAAATCACAAAAAACTGATGTTGAATATAAATTTTTCGATTTTTCACCCAAATTACATACAGTATCCGGGCGTATAGAATAGCAGGAGGTACCATATAAGCACATTGTAATAAATATTTCAAATTTTCGAAAATTCCAGAATAACTCAAATCACAACTGAAACCCGG</canonical>
            <polymorphic>TTTATAGAAAATCCGCCAAAATAGGAAATTAGAATTTTTGGAGAAATTACAGTATTCCAGATAAATAAAAAGGGAGTGATAAGGATGAATATGATAATAAATGACAGATTTTTTCTCCAAATTTTGTTATGATCAACTGGCCAAACGACTGAAGACATTCGATTTAGGGTCAGAAATATTTGAATTAATGGTTGACAACAATGGAGATAATTAAAAAATGGATAATAAATATCCATTAAAATAGGGTGGGACAGAAAGAATTTGGAGCCAGATTCACAAAATTGAGGGGTATAGATGAAGAAACGAATGATGAATATGTCAAGGAGAAGGAGAAAGAGGCCCTGAAACGTTTGATTTTTTCAATTTCAAGGAATTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGKAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGAATTAAAAACGTTGAAAACCAATGAGTCCACTGACCAGTCTGAAGGTGTGAATTTCCTCTAAATTTTTGAATTATCGAACATTTGGATTTCTGAATTGAAAAATTGAAATATGGCCACAAATAAAGGAATTACGACCATAATTATCCATTAATTAATTACCCAATTAACCAAATAACCCACCATCAGACTATCCATTGAATAAATCACAAAAAACTGATGTTGAATATAAATTTTTCGATTTTTCACCCAAATTACATACAGTATCCGGGCGTATAGAATAGCAGGAGGTACCATATAAGCACATTGTAATAAATATTTCAAATTTTCGAAAATTCCAGAATAACTCAAATCACAACTGAAACCCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>447 275 121 106 51</canonical_bands>
                <polymorphic_bands>568 275 106 51</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>498 381 121</canonical_bands>
                <polymorphic_bands>619 381</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCATTCGTTGTCTAGATTTCTG</pcr_primer_p1>
		<pcr_primer_p2>TCATTTTTGGGTCACTGTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>TTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGTAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGA</canonical_amplicon>
		<polymorphic_amplicon>TTCATTCGTTGTCTAGATTTCTGGTAAATTTTCAAAAAATTTAAACGTCAGATTAGAGTTTTCCACTCCCGAACCAGTCTATATCCCAATTTTCCGCTCGGTGTTTGCGTACTTTTGAAGCTACAGKAACCCAAAAATCTCAAAAATCTTCAAAACCGAGATAGAAACTTCTGGTTTTTTGTGTCAAGTGTTAAATTTTGCAGCGATTTCAAATTCGTTGTTTGTTCTTGAATTTCTAAATTTACAGTGACCCAAAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30310</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>84238</contig_pos>
        <strand>+</strand>
        <context>gataCAAACG[A/C]Tcaaagatac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACG</left_flank>
        <right_flank>TCAAAGATACAACCGCTCAAAATTTTTAGAAAAGACGCAGAGAAAGCAGA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTTTAGAATTTTAGAATTCTAGAATTCTAAAATTCCAGAATTTTAAAGTTTTAAAATTCTTGCTCTCTTACCCAATGTTGAGCAAATCAAAAGAGACACACTGTAACATATAGAAAGTCTCCGCCCACTCGTGATTTTCTCGAAACCATGCAAAATGAGCCTGAGCAATCATTGCGATCGCAAATCCTACAGTAATCCATGACGTCGCAATGCACAATTGTTTCTCTCCAGAAATCATCCGTTTTTTCAGTTTACACATTTTTGATAAAACGATTCCATTGGAAATTAGGGTGATAGAAAATGTGAAAACAAAGGAAATTATTTGAAATCTCGATAGACTGGCCTGGAAAACCCACTTCATTGCGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTACAAAAATATAGAGCATAAAATTTTGCACATTTTATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACGATCAAAGATACAACCGCTCAAAATTTTTAGAAAAGACGCAGAGAAAGCAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTTTGTTATAACTGATCACAAATCCTCCGAAAACATAATCCAGATATTTTTCGGAAATAATCACATTCCATATTAACAGAAACGGATATAAAGCTACGAAAATCACAACTTTTCTCATGTGCTTTGACCAAATCTGAAGTTTTCTGATTTTCTATTTTTCCAGCACATTTTCAGTGGTTTTGATGTTGTATTCGTTTTCTACGGCTCAAAATTAGTCTCGATTTTAATTTTCAGCCCTCTAGCTCGCAATCGGTGTTTGCGTACTTTCGAAGCTACAGTAACACGAAAAAACTCAAAAATCTTTGAAATGGAGCTAGAGAAATTTAGTTTTTTGGCTTTGTACTAAAATTTCATAGGGATATAGAATATAATTTAGTTTTGAACAATTCCAACTTTTTTTTTGAAAG</canonical>
            <polymorphic>GAATTTTAGAATTTTAGAATTCTAGAATTCTAAAATTCCAGAATTTTAAAGTTTTAAAATTCTTGCTCTCTTACCCAATGTTGAGCAAATCAAAAGAGACACACTGTAACATATAGAAAGTCTCCGCCCACTCGTGATTTTCTCGAAACCATGCAAAATGAGCCTGAGCAATCATTGCGATCGCAAATCCTACAGTAATCCATGACGTCGCAATGCACAATTGTTTCTCTCCAGAAATCATCCGTTTTTTCAGTTTACACATTTTTGATAAAACGATTCCATTGGAAATTAGGGTGATAGAAAATGTGAAAACAAAGGAAATTATTTGAAATCTCGATAGACTGGCCTGGAAAACCCACTTCATTGCGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTACAAAAATATAGAGCATAAAATTTTGCACATTTTATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACGMTCAAAGATACAACCGCTCAAAATTTTTAGAAAAGACGCAGAGAAAGCAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTTTGTTATAACTGATCACAAATCCTCCGAAAACATAATCCAGATATTTTTCGGAAATAATCACATTCCATATTAACAGAAACGGATATAAAGCTACGAAAATCACAACTTTTCTCATGTGCTTTGACCAAATCTGAAGTTTTCTGATTTTCTATTTTTCCAGCACATTTTCAGTGGTTTTGATGTTGTATTCGTTTTCTACGGCTCAAAATTAGTCTCGATTTTAATTTTCAGCCCTCTAGCTCGCAATCGGTGTTTGCGTACTTTCGAAGCTACAGTAACACGAAAAAACTCAAAAATCTTTGAAATGGAGCTAGAGAAATTTAGTTTTTTGGCTTTGTACTAAAATTTCATAGGGATATAGAATATAATTTAGTTTTGAACAATTCCAACTTTTTTTTTGAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>394 320 178 108</canonical_bands>
                <polymorphic_bands>428 394 178</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAATTATTTGAAATCTCGATAG</pcr_primer_p1>
		<pcr_primer_p2>TCAGTTATAACAAAAGAGTGATATGG</pcr_primer_p2>
		<pcr_amplicon_size>292</pcr_amplicon_size>
		<canonical_amplicon>GGAAATTATTTGAAATCTCGATAGACTGGCCTGGAAAACCCACTTCATTGCGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTACAAAAATATAGAGCATAAAATTTTGCACATTTTATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACGATCAAAGATACAACCGCTCAAAATTTTTAGAAAAGACGCAGAGAAAGCAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTTTGTTATAACTGA</canonical_amplicon>
		<polymorphic_amplicon>GGAAATTATTTGAAATCTCGATAGACTGGCCTGGAAAACCCACTTCATTGCGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTACAAAAATATAGAGCATAAAATTTTGCACATTTTATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACGMTCAAAGATACAACCGCTCAAAATTTTTAGAAAAGACGCAGAGAAAGCAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTTTGTTATAACTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30311</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>84260</contig_pos>
        <strand></strand>
        <context>accgctcaaa[A/C]tttttagaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCTTTTTTAGTTCGCGAGATACAAACGATCAAAGATACAACCGCTCAAA</left_flank>
        <right_flank>TTTTTAGAAAAGACGCAGAGAAAGCAGACTCTCTCGTTTCTCTGCGTCTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGAATTCTAAAATTCCAGAATTTTAAAGTTTTAAAATTCTTGCTCTCTTACCCAATGTTGAGCAAATCAAAAGAGACACACTGTAACATATAGAAAGTCTCCGCCCACTCGTGATTTTCTCGAAACCATGCAAAATGAGCCTGAGCAATCATTGCGATCGCAAATCCTACAGTAATCCATGACGTCGCAATGCACAATTGTTTCTCTCCAGAAATCATCCGTTTTTTCAGTTTACACATTTTTGATAAAACGATTCCATTGGAAATTAGGGTGATAGAAAATGTGAAAACAAAGGAAATTATTTGAAATCTCGATAGACTGGCCTGGAAAACCCACTTCATTGCGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTACAAAAATATAGAGCATAAAATTTTGCACATTTTATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACGATCAAAGATACAACCGCTCAAAATTTTTAGAAAAGACGCAGAGAAAGCAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTTTGTTATAACTGATCACAAATCCTCCGAAAACATAATCCAGATATTTTTCGGAAATAATCACATTCCATATTAACAGAAACGGATATAAAGCTACGAAAATCACAACTTTTCTCATGTGCTTTGACCAAATCTGAAGTTTTCTGATTTTCTATTTTTCCAGCACATTTTCAGTGGTTTTGATGTTGTATTCGTTTTCTACGGCTCAAAATTAGTCTCGATTTTAATTTTCAGCCCTCTAGCTCGCAATCGGTGTTTGCGTACTTTCGAAGCTACAGTAACACGAAAAAACTCAAAAATCTTTGAAATGGAGCTAGAGAAATTTAGTTTTTTGGCTTTGTACTAAAATTTCATAGGGATATAGAATATAATTTAGTTTTGAACAATTCCAACTTTTTTTTTGAAAGTTACAGTACTCCTGGAACTACA</canonical>
            <polymorphic>TAGAATTCTAAAATTCCAGAATTTTAAAGTTTTAAAATTCTTGCTCTCTTACCCAATGTTGAGCAAATCAAAAGAGACACACTGTAACATATAGAAAGTCTCCGCCCACTCGTGATTTTCTCGAAACCATGCAAAATGAGCCTGAGCAATCATTGCGATCGCAAATCCTACAGTAATCCATGACGTCGCAATGCACAATTGTTTCTCTCCAGAAATCATCCGTTTTTTCAGTTTACACATTTTTGATAAAACGATTCCATTGGAAATTAGGGTGATAGAAAATGTGAAAACAAAGGAAATTATTTGAAATCTCGATAGACTGGCCTGGAAAACCCACTTCATTGCGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTACAAAAATATAGAGCATAAAATTTTGCACATTTTATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACGATCAAAGATACAACCGCTCAAAMTTTTTAGAAAAGACGCAGAGAAAGCAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTTTGTTATAACTGATCACAAATCCTCCGAAAACATAATCCAGATATTTTTCGGAAATAATCACATTCCATATTAACAGAAACGGATATAAAGCTACGAAAATCACAACTTTTCTCATGTGCTTTGACCAAATCTGAAGTTTTCTGATTTTCTATTTTTCCAGCACATTTTCAGTGGTTTTGATGTTGTATTCGTTTTCTACGGCTCAAAATTAGTCTCGATTTTAATTTTCAGCCCTCTAGCTCGCAATCGGTGTTTGCGTACTTTCGAAGCTACAGTAACACGAAAAAACTCAAAAATCTTTGAAATGGAGCTAGAGAAATTTAGTTTTTTGGCTTTGTACTAAAATTTCATAGGGATATAGAATATAATTTAGTTTTGAACAATTCCAACTTTTTTTTTGAAAGTTACAGTACTCCTGGAACTACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>393 378 85 83 26 16 8 8 3</canonical_bands>
                <polymorphic_bands>478 378 83 26 16 8 8 3</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>282 161 116 95 85 68 45 33 26 23 16 16 15 8 8 3</canonical_bands>
                <polymorphic_bands>367 161 116 95 68 45 33 26 23 16 16 15 8 8 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAATTATTTGAAATCTCGATAG</pcr_primer_p1>
		<pcr_primer_p2>TCAGTTATAACAAAAGAGTGATATGG</pcr_primer_p2>
		<pcr_amplicon_size>292</pcr_amplicon_size>
		<canonical_amplicon>GGAAATTATTTGAAATCTCGATAGACTGGCCTGGAAAACCCACTTCATTGCGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTACAAAAATATAGAGCATAAAATTTTGCACATTTTATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACGATCAAAGATACAACCGCTCAAAATTTTTAGAAAAGACGCAGAGAAAGCAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTTTGTTATAACTGA</canonical_amplicon>
		<polymorphic_amplicon>GGAAATTATTTGAAATCTCGATAGACTGGCCTGGAAAACCCACTTCATTGCGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTACAAAAATATAGAGCATAAAATTTTGCACATTTTATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACGATCAAAGATACAACCGCTCAAAMTTTTTAGAAAAGACGCAGAGAAAGCAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTTTGTTATAACTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30312</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>84284</contig_pos>
        <strand></strand>
        <context>cgcagagaaa[G/A]cagactctct</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AACGATCAAAGATACAACCGCTCAAAATTTTTAGAAAAGACGCAGAGAAA</left_flank>
        <right_flank>CAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAGTTTTAAAATTCTTGCTCTCTTACCCAATGTTGAGCAAATCAAAAGAGACACACTGTAACATATAGAAAGTCTCCGCCCACTCGTGATTTTCTCGAAACCATGCAAAATGAGCCTGAGCAATCATTGCGATCGCAAATCCTACAGTAATCCATGACGTCGCAATGCACAATTGTTTCTCTCCAGAAATCATCCGTTTTTTCAGTTTACACATTTTTGATAAAACGATTCCATTGGAAATTAGGGTGATAGAAAATGTGAAAACAAAGGAAATTATTTGAAATCTCGATAGACTGGCCTGGAAAACCCACTTCATTGCGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTACAAAAATATAGAGCATAAAATTTTGCACATTTTATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACGATCAAAGATACAACCGCTCAAAATTTTTAGAAAAGACGCAGAGAAAGCAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTTTGTTATAACTGATCACAAATCCTCCGAAAACATAATCCAGATATTTTTCGGAAATAATCACATTCCATATTAACAGAAACGGATATAAAGCTACGAAAATCACAACTTTTCTCATGTGCTTTGACCAAATCTGAAGTTTTCTGATTTTCTATTTTTCCAGCACATTTTCAGTGGTTTTGATGTTGTATTCGTTTTCTACGGCTCAAAATTAGTCTCGATTTTAATTTTCAGCCCTCTAGCTCGCAATCGGTGTTTGCGTACTTTCGAAGCTACAGTAACACGAAAAAACTCAAAAATCTTTGAAATGGAGCTAGAGAAATTTAGTTTTTTGGCTTTGTACTAAAATTTCATAGGGATATAGAATATAATTTAGTTTTGAACAATTCCAACTTTTTTTTTGAAAGTTACAGTACTCCTGGAACTACAAAACCATATTAGTGTCTTCGGGTG</canonical>
            <polymorphic>TAAAGTTTTAAAATTCTTGCTCTCTTACCCAATGTTGAGCAAATCAAAAGAGACACACTGTAACATATAGAAAGTCTCCGCCCACTCGTGATTTTCTCGAAACCATGCAAAATGAGCCTGAGCAATCATTGCGATCGCAAATCCTACAGTAATCCATGACGTCGCAATGCACAATTGTTTCTCTCCAGAAATCATCCGTTTTTTCAGTTTACACATTTTTGATAAAACGATTCCATTGGAAATTAGGGTGATAGAAAATGTGAAAACAAAGGAAATTATTTGAAATCTCGATAGACTGGCCTGGAAAACCCACTTCATTGCGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTACAAAAATATAGAGCATAAAATTTTGCACATTTTATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACGATCAAAGATACAACCGCTCAAAATTTTTAGAAAAGACGCAGAGAAARCAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTTTGTTATAACTGATCACAAATCCTCCGAAAACATAATCCAGATATTTTTCGGAAATAATCACATTCCATATTAACAGAAACGGATATAAAGCTACGAAAATCACAACTTTTCTCATGTGCTTTGACCAAATCTGAAGTTTTCTGATTTTCTATTTTTCCAGCACATTTTCAGTGGTTTTGATGTTGTATTCGTTTTCTACGGCTCAAAATTAGTCTCGATTTTAATTTTCAGCCCTCTAGCTCGCAATCGGTGTTTGCGTACTTTCGAAGCTACAGTAACACGAAAAAACTCAAAAATCTTTGAAATGGAGCTAGAGAAATTTAGTTTTTTGGCTTTGTACTAAAATTTCATAGGGATATAGAATATAATTTAGTTTTGAACAATTCCAACTTTTTTTTTGAAAGTTACAGTACTCCTGGAACTACAAAACCATATTAGTGTCTTCGGGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 369 113 15</canonical_bands>
                <polymorphic_bands>872 113 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAATTATTTGAAATCTCGATAG</pcr_primer_p1>
		<pcr_primer_p2>TCAGTTATAACAAAAGAGTGATATGG</pcr_primer_p2>
		<pcr_amplicon_size>292</pcr_amplicon_size>
		<canonical_amplicon>GGAAATTATTTGAAATCTCGATAGACTGGCCTGGAAAACCCACTTCATTGCGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTACAAAAATATAGAGCATAAAATTTTGCACATTTTATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACGATCAAAGATACAACCGCTCAAAATTTTTAGAAAAGACGCAGAGAAAGCAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTTTGTTATAACTGA</canonical_amplicon>
		<polymorphic_amplicon>GGAAATTATTTGAAATCTCGATAGACTGGCCTGGAAAACCCACTTCATTGCGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTACAAAAATATAGAGCATAAAATTTTGCACATTTTATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACGATCAAAGATACAACCGCTCAAAATTTTTAGAAAAGACGCAGAGAAARCAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTTTGTTATAACTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30313</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>84549</contig_pos>
        <strand></strand>
        <context>aaaattagtc[T/C]mgatttwaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTCAGTGGTTTTGATGTTGTATTCGTTTTCTACGGCTCAAAATTAGTC</left_flank>
        <right_flank>CGATTTTAATTTTCAGCCCTCTAGCTCGCAATCGGTGTTTGCGTACTTTC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAAAGGAAATTATTTGAAATCTCGATAGACTGGCCTGGAAAACCCACTTCATTGCGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTACAAAAATATAGAGCATAAAATTTTGCACATTTTATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACGATCAAAGATACAACCGCTCAAAATTTTTAGAAAAGACGCAGAGAAAGCAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTTTGTTATAACTGATCACAAATCCTCCGAAAACATAATCCAGATATTTTTCGGAAATAATCACATTCCATATTAACAGAAACGGATATAAAGCTACGAAAATCACAACTTTTCTCATGTGCTTTGACCAAATCTGAAGTTTTCTGATTTTCTATTTTTCCAGCACATTTTCAGTGGTTTTGATGTTGTATTCGTTTTCTACGGCTCAAAATTAGTCTCGATTTTAATTTTCAGCCCTCTAGCTCGCAATCGGTGTTTGCGTACTTTCGAAGCTACAGTAACACGAAAAAACTCAAAAATCTTTGAAATGGAGCTAGAGAAATTTAGTTTTTTGGCTTTGTACTAAAATTTCATAGGGATATAGAATATAATTTAGTTTTGAACAATTCCAACTTTTTTTTTGAAAGTTACAGTACTCCTGGAACTACAAAACCATATTAGTGTCTTCGGGTGCCTTTCTAAGCAATTTCAGCATTAAAAACGTATTTCTTTCCCTTTAATTAGTCTAGGTTCCAATTTTCAGCCGTCTAGTTCACCATCGGTGTTTGCGTACTTTTGAAGCTACAGTAATCCAAAAAAACTCAAAAATCTTCAAAATAAAGCTAGAGAGATCTAGTTTTTTGTGACACGTGCCAAATTTTACGGCTAATTCAAATCTGTAACTCACTTGAGTATATTTTAATGGCATCAAGACACAACTGGCTCGATTTATAGACAA</canonical>
            <polymorphic>ACAAAGGAAATTATTTGAAATCTCGATAGACTGGCCTGGAAAACCCACTTCATTGCGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTACAAAAATATAGAGCATAAAATTTTGCACATTTTATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACGATCAAAGATACAACCGCTCAAAATTTTTAGAAAAGACGCAGAGAAAGCAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTTTGTTATAACTGATCACAAATCCTCCGAAAACATAATCCAGATATTTTTCGGAAATAATCACATTCCATATTAACAGAAACGGATATAAAGCTACGAAAATCACAACTTTTCTCATGTGCTTTGACCAAATCTGAAGTTTTCTGATTTTCTATTTTTCCAGCACATTTTCAGTGGTTTTGATGTTGTATTCGTTTTCTACGGCTCAAAATTAGTCYCGATTTTAATTTTCAGCCCTCTAGCTCGCAATCGGTGTTTGCGTACTTTCGAAGCTACAGTAACACGAAAAAACTCAAAAATCTTTGAAATGGAGCTAGAGAAATTTAGTTTTTTGGCTTTGTACTAAAATTTCATAGGGATATAGAATATAATTTAGTTTTGAACAATTCCAACTTTTTTTTTGAAAGTTACAGTACTCCTGGAACTACAAAACCATATTAGTGTCTTCGGGTGCCTTTCTAAGCAATTTCAGCATTAAAAACGTATTTCTTTCCCTTTAATTAGTCTAGGTTCCAATTTTCAGCCGTCTAGTTCACCATCGGTGTTTGCGTACTTTTGAAGCTACAGTAATCCAAAAAAACTCAAAAATCTTCAAAATAAAGCTAGAGAGATCTAGTTTTTTGTGACACGTGCCAAATTTTACGGCTAATTCAAATCTGTAACTCACTTGAGTATATTTTAATGGCATCAAGACACAACTGGCTCGATTTATAGACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>477 437 49 24 13</canonical_bands>
                <polymorphic_bands>526 437 24 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATTTTCTATTTTTCCAGCAC</pcr_primer_p1>
		<pcr_primer_p2>AGTTGGAATTGTTCAAAACTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGATTTTCTATTTTTCCAGCACATTTTCAGTGGTTTTGATGTTGTATTCGTTTTCTACGGCTCAAAATTAGTCTCGATTTTAATTTTCAGCCCTCTAGCTCGCAATCGGTGTTTGCGTACTTTCGAAGCTACAGTAACACGAAAAAACTCAAAAATCTTTGAAATGGAGCTAGAGAAATTTAGTTTTTTGGCTTTGTACTAAAATTTCATAGGGATATAGAATATAATTTAGTTTTGAACAATTCCAACT</canonical_amplicon>
		<polymorphic_amplicon>TGATTTTCTATTTTTCCAGCACATTTTCAGTGGTTTTGATGTTGTATTCGTTTTCTACGGCTCAAAATTAGTCYCGATTTTAATTTTCAGCCCTCTAGCTCGCAATCGGTGTTTGCGTACTTTCGAAGCTACAGTAACACGAAAAAACTCAAAAATCTTTGAAATGGAGCTAGAGAAATTTAGTTTTTTGGCTTTGTACTAAAATTTCATAGGGATATAGAATATAATTTAGTTTTGAACAATTCCAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30314</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>84550</contig_pos>
        <strand></strand>
        <context>aaattagtcy[C/A]gatttwaatt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTCAGTGGTTTTGATGTTGTATTCGTTTTCTACGGCTCAAAATTAGTCT</left_flank>
        <right_flank>GATTTTAATTTTCAGCCCTCTAGCTCGCAATCGGTGTTTGCGTACTTTCG</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAGGAAATTATTTGAAATCTCGATAGACTGGCCTGGAAAACCCACTTCATTGCGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTACAAAAATATAGAGCATAAAATTTTGCACATTTTATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACGATCAAAGATACAACCGCTCAAAATTTTTAGAAAAGACGCAGAGAAAGCAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTTTGTTATAACTGATCACAAATCCTCCGAAAACATAATCCAGATATTTTTCGGAAATAATCACATTCCATATTAACAGAAACGGATATAAAGCTACGAAAATCACAACTTTTCTCATGTGCTTTGACCAAATCTGAAGTTTTCTGATTTTCTATTTTTCCAGCACATTTTCAGTGGTTTTGATGTTGTATTCGTTTTCTACGGCTCAAAATTAGTCTCGATTTTAATTTTCAGCCCTCTAGCTCGCAATCGGTGTTTGCGTACTTTCGAAGCTACAGTAACACGAAAAAACTCAAAAATCTTTGAAATGGAGCTAGAGAAATTTAGTTTTTTGGCTTTGTACTAAAATTTCATAGGGATATAGAATATAATTTAGTTTTGAACAATTCCAACTTTTTTTTTGAAAGTTACAGTACTCCTGGAACTACAAAACCATATTAGTGTCTTCGGGTGCCTTTCTAAGCAATTTCAGCATTAAAAACGTATTTCTTTCCCTTTAATTAGTCTAGGTTCCAATTTTCAGCCGTCTAGTTCACCATCGGTGTTTGCGTACTTTTGAAGCTACAGTAATCCAAAAAAACTCAAAAATCTTCAAAATAAAGCTAGAGAGATCTAGTTTTTTGTGACACGTGCCAAATTTTACGGCTAATTCAAATCTGTAACTCACTTGAGTATATTTTAATGGCATCAAGACACAACTGGCTCGATTTATAGACAAG</canonical>
            <polymorphic>CAAAGGAAATTATTTGAAATCTCGATAGACTGGCCTGGAAAACCCACTTCATTGCGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTACAAAAATATAGAGCATAAAATTTTGCACATTTTATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACGATCAAAGATACAACCGCTCAAAATTTTTAGAAAAGACGCAGAGAAAGCAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTTTGTTATAACTGATCACAAATCCTCCGAAAACATAATCCAGATATTTTTCGGAAATAATCACATTCCATATTAACAGAAACGGATATAAAGCTACGAAAATCACAACTTTTCTCATGTGCTTTGACCAAATCTGAAGTTTTCTGATTTTCTATTTTTCCAGCACATTTTCAGTGGTTTTGATGTTGTATTCGTTTTCTACGGCTCAAAATTAGTCTMGATTTTAATTTTCAGCCCTCTAGCTCGCAATCGGTGTTTGCGTACTTTCGAAGCTACAGTAACACGAAAAAACTCAAAAATCTTTGAAATGGAGCTAGAGAAATTTAGTTTTTTGGCTTTGTACTAAAATTTCATAGGGATATAGAATATAATTTAGTTTTGAACAATTCCAACTTTTTTTTTGAAAGTTACAGTACTCCTGGAACTACAAAACCATATTAGTGTCTTCGGGTGCCTTTCTAAGCAATTTCAGCATTAAAAACGTATTTCTTTCCCTTTAATTAGTCTAGGTTCCAATTTTCAGCCGTCTAGTTCACCATCGGTGTTTGCGTACTTTTGAAGCTACAGTAATCCAAAAAAACTCAAAAATCTTCAAAATAAAGCTAGAGAGATCTAGTTTTTTGTGACACGTGCCAAATTTTACGGCTAATTCAAATCTGTAACTCACTTGAGTATATTTTAATGGCATCAAGACACAACTGGCTCGATTTATAGACAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>477 437 49 23 14</canonical_bands>
                <polymorphic_bands>526 437 23 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATTTTCTATTTTTCCAGCAC</pcr_primer_p1>
		<pcr_primer_p2>AGTTGGAATTGTTCAAAACTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGATTTTCTATTTTTCCAGCACATTTTCAGTGGTTTTGATGTTGTATTCGTTTTCTACGGCTCAAAATTAGTCTCGATTTTAATTTTCAGCCCTCTAGCTCGCAATCGGTGTTTGCGTACTTTCGAAGCTACAGTAACACGAAAAAACTCAAAAATCTTTGAAATGGAGCTAGAGAAATTTAGTTTTTTGGCTTTGTACTAAAATTTCATAGGGATATAGAATATAATTTAGTTTTGAACAATTCCAACT</canonical_amplicon>
		<polymorphic_amplicon>TGATTTTCTATTTTTCCAGCACATTTTCAGTGGTTTTGATGTTGTATTCGTTTTCTACGGCTCAAAATTAGTCTMGATTTTAATTTTCAGCCCTCTAGCTCGCAATCGGTGTTTGCGTACTTTCGAAGCTACAGTAACACGAAAAAACTCAAAAATCTTTGAAATGGAGCTAGAGAAATTTAGTTTTTTGGCTTTGTACTAAAATTTCATAGGGATATAGAATATAATTTAGTTTTGAACAATTCCAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30315</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>84556</contig_pos>
        <strand></strand>
        <context>gtcymgattt[T/A]aattttcagc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGGTTTTGATGTTGTATTCGTTTTCTACGGCTCAAAATTAGTCTCGATTT</left_flank>
        <right_flank>AATTTTCAGCCCTCTAGCTCGCAATCGGTGTTTGCGTACTTTCGAAGCTA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTATTTGAAATCTCGATAGACTGGCCTGGAAAACCCACTTCATTGCGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTACAAAAATATAGAGCATAAAATTTTGCACATTTTATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACGATCAAAGATACAACCGCTCAAAATTTTTAGAAAAGACGCAGAGAAAGCAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTTTGTTATAACTGATCACAAATCCTCCGAAAACATAATCCAGATATTTTTCGGAAATAATCACATTCCATATTAACAGAAACGGATATAAAGCTACGAAAATCACAACTTTTCTCATGTGCTTTGACCAAATCTGAAGTTTTCTGATTTTCTATTTTTCCAGCACATTTTCAGTGGTTTTGATGTTGTATTCGTTTTCTACGGCTCAAAATTAGTCTCGATTTTAATTTTCAGCCCTCTAGCTCGCAATCGGTGTTTGCGTACTTTCGAAGCTACAGTAACACGAAAAAACTCAAAAATCTTTGAAATGGAGCTAGAGAAATTTAGTTTTTTGGCTTTGTACTAAAATTTCATAGGGATATAGAATATAATTTAGTTTTGAACAATTCCAACTTTTTTTTTGAAAGTTACAGTACTCCTGGAACTACAAAACCATATTAGTGTCTTCGGGTGCCTTTCTAAGCAATTTCAGCATTAAAAACGTATTTCTTTCCCTTTAATTAGTCTAGGTTCCAATTTTCAGCCGTCTAGTTCACCATCGGTGTTTGCGTACTTTTGAAGCTACAGTAATCCAAAAAAACTCAAAAATCTTCAAAATAAAGCTAGAGAGATCTAGTTTTTTGTGACACGTGCCAAATTTTACGGCTAATTCAAATCTGTAACTCACTTGAGTATATTTTAATGGCATCAAGACACAACTGGCTCGATTTATAGACAAGTATGAG</canonical>
            <polymorphic>AAATTATTTGAAATCTCGATAGACTGGCCTGGAAAACCCACTTCATTGCGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTACAAAAATATAGAGCATAAAATTTTGCACATTTTATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACGATCAAAGATACAACCGCTCAAAATTTTTAGAAAAGACGCAGAGAAAGCAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTTTGTTATAACTGATCACAAATCCTCCGAAAACATAATCCAGATATTTTTCGGAAATAATCACATTCCATATTAACAGAAACGGATATAAAGCTACGAAAATCACAACTTTTCTCATGTGCTTTGACCAAATCTGAAGTTTTCTGATTTTCTATTTTTCCAGCACATTTTCAGTGGTTTTGATGTTGTATTCGTTTTCTACGGCTCAAAATTAGTCTCGATTTWAATTTTCAGCCCTCTAGCTCGCAATCGGTGTTTGCGTACTTTCGAAGCTACAGTAACACGAAAAAACTCAAAAATCTTTGAAATGGAGCTAGAGAAATTTAGTTTTTTGGCTTTGTACTAAAATTTCATAGGGATATAGAATATAATTTAGTTTTGAACAATTCCAACTTTTTTTTTGAAAGTTACAGTACTCCTGGAACTACAAAACCATATTAGTGTCTTCGGGTGCCTTTCTAAGCAATTTCAGCATTAAAAACGTATTTCTTTCCCTTTAATTAGTCTAGGTTCCAATTTTCAGCCGTCTAGTTCACCATCGGTGTTTGCGTACTTTTGAAGCTACAGTAATCCAAAAAAACTCAAAAATCTTCAAAATAAAGCTAGAGAGATCTAGTTTTTTGTGACACGTGCCAAATTTTACGGCTAATTCAAATCTGTAACTCACTTGAGTATATTTTAATGGCATCAAGACACAACTGGCTCGATTTATAGACAAGTATGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>348 251 182 151 46 22</canonical_bands>
                <polymorphic_bands>402 348 182 46 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATTTTCTATTTTTCCAGCAC</pcr_primer_p1>
		<pcr_primer_p2>AGTTGGAATTGTTCAAAACTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGATTTTCTATTTTTCCAGCACATTTTCAGTGGTTTTGATGTTGTATTCGTTTTCTACGGCTCAAAATTAGTCTCGATTTTAATTTTCAGCCCTCTAGCTCGCAATCGGTGTTTGCGTACTTTCGAAGCTACAGTAACACGAAAAAACTCAAAAATCTTTGAAATGGAGCTAGAGAAATTTAGTTTTTTGGCTTTGTACTAAAATTTCATAGGGATATAGAATATAATTTAGTTTTGAACAATTCCAACT</canonical_amplicon>
		<polymorphic_amplicon>TGATTTTCTATTTTTCCAGCACATTTTCAGTGGTTTTGATGTTGTATTCGTTTTCTACGGCTCAAAATTAGTCTCGATTTWAATTTTCAGCCCTCTAGCTCGCAATCGGTGTTTGCGTACTTTCGAAGCTACAGTAACACGAAAAAACTCAAAAATCTTTGAAATGGAGCTAGAGAAATTTAGTTTTTTGGCTTTGTACTAAAATTTCATAGGGATATAGAATATAATTTAGTTTTGAACAATTCCAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30316</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>84599</contig_pos>
        <strand></strand>
        <context>tgcgtacttt[C/T]gaagctacag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGATTTTAATTTTCAGCCCTCTAGCTCGCAATCGGTGTTTGCGTACTTT</left_flank>
        <right_flank>GAAGCTACAGTAACACGAAAAAACTCAAAAATCTTTGAAATGGAGCTAGA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTGCGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTACAAAAATATAGAGCATAAAATTTTGCACATTTTATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACGATCAAAGATACAACCGCTCAAAATTTTTAGAAAAGACGCAGAGAAAGCAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTTTGTTATAACTGATCACAAATCCTCCGAAAACATAATCCAGATATTTTTCGGAAATAATCACATTCCATATTAACAGAAACGGATATAAAGCTACGAAAATCACAACTTTTCTCATGTGCTTTGACCAAATCTGAAGTTTTCTGATTTTCTATTTTTCCAGCACATTTTCAGTGGTTTTGATGTTGTATTCGTTTTCTACGGCTCAAAATTAGTCTCGATTTTAATTTTCAGCCCTCTAGCTCGCAATCGGTGTTTGCGTACTTTCGAAGCTACAGTAACACGAAAAAACTCAAAAATCTTTGAAATGGAGCTAGAGAAATTTAGTTTTTTGGCTTTGTACTAAAATTTCATAGGGATATAGAATATAATTTAGTTTTGAACAATTCCAACTTTTTTTTTGAAAGTTACAGTACTCCTGGAACTACAAAACCATATTAGTGTCTTCGGGTGCCTTTCTAAGCAATTTCAGCATTAAAAACGTATTTCTTTCCCTTTAATTAGTCTAGGTTCCAATTTTCAGCCGTCTAGTTCACCATCGGTGTTTGCGTACTTTTGAAGCTACAGTAATCCAAAAAAACTCAAAAATCTTCAAAATAAAGCTAGAGAGATCTAGTTTTTTGTGACACGTGCCAAATTTTACGGCTAATTCAAATCTGTAACTCACTTGAGTATATTTTAATGGCATCAAGACACAACTGGCTCGATTTATAGACAAGTATGAGTGAATCACAGTTTTCGCAGTTGCACAATAAATATAGAGAGGAT</canonical>
            <polymorphic>CATTGCGAACAACTGTATCTCAAAAACTAAAAAAGCTAGACAGAACGTTTTTTTTACAAAAATATAGAGCATAAAATTTTGCACATTTTATCAGTTGACAACTTTTTTCTATCTTTTTTAGTTCGCGAGATACAAACGATCAAAGATACAACCGCTCAAAATTTTTAGAAAAGACGCAGAGAAAGCAGACTCTCTCGTTTCTCTGCGTCTCTCTCACCCACCCATATCACTCTTTTGTTATAACTGATCACAAATCCTCCGAAAACATAATCCAGATATTTTTCGGAAATAATCACATTCCATATTAACAGAAACGGATATAAAGCTACGAAAATCACAACTTTTCTCATGTGCTTTGACCAAATCTGAAGTTTTCTGATTTTCTATTTTTCCAGCACATTTTCAGTGGTTTTGATGTTGTATTCGTTTTCTACGGCTCAAAATTAGTCTCGATTTTAATTTTCAGCCCTCTAGCTCGCAATCGGTGTTTGCGTACTTTYGAAGCTACAGTAACACGAAAAAACTCAAAAATCTTTGAAATGGAGCTAGAGAAATTTAGTTTTTTGGCTTTGTACTAAAATTTCATAGGGATATAGAATATAATTTAGTTTTGAACAATTCCAACTTTTTTTTTGAAAGTTACAGTACTCCTGGAACTACAAAACCATATTAGTGTCTTCGGGTGCCTTTCTAAGCAATTTCAGCATTAAAAACGTATTTCTTTCCCTTTAATTAGTCTAGGTTCCAATTTTCAGCCGTCTAGTTCACCATCGGTGTTTGCGTACTTTTGAAGCTACAGTAATCCAAAAAAACTCAAAAATCTTCAAAATAAAGCTAGAGAGATCTAGTTTTTTGTGACACGTGCCAAATTTTACGGCTAATTCAAATCTGTAACTCACTTGAGTATATTTTAATGGCATCAAGACACAACTGGCTCGATTTATAGACAAGTATGAGTGAATCACAGTTTTCGCAGTTGCACAATAAATATAGAGAGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>451 437 63 49</canonical_bands>
                <polymorphic_bands>486 451 63</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATTTTCTATTTTTCCAGCAC</pcr_primer_p1>
		<pcr_primer_p2>AGTTGGAATTGTTCAAAACTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGATTTTCTATTTTTCCAGCACATTTTCAGTGGTTTTGATGTTGTATTCGTTTTCTACGGCTCAAAATTAGTCTCGATTTTAATTTTCAGCCCTCTAGCTCGCAATCGGTGTTTGCGTACTTTCGAAGCTACAGTAACACGAAAAAACTCAAAAATCTTTGAAATGGAGCTAGAGAAATTTAGTTTTTTGGCTTTGTACTAAAATTTCATAGGGATATAGAATATAATTTAGTTTTGAACAATTCCAACT</canonical_amplicon>
		<polymorphic_amplicon>TGATTTTCTATTTTTCCAGCACATTTTCAGTGGTTTTGATGTTGTATTCGTTTTCTACGGCTCAAAATTAGTCTCGATTTTAATTTTCAGCCCTCTAGCTCGCAATCGGTGTTTGCGTACTTTYGAAGCTACAGTAACACGAAAAAACTCAAAAATCTTTGAAATGGAGCTAGAGAAATTTAGTTTTTTGGCTTTGTACTAAAATTTCATAGGGATATAGAATATAATTTAGTTTTGAACAATTCCAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30317</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>96907</contig_pos>
        <strand></strand>
        <context>gagaatggcg[C/T]gccaacttta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGCGCCTCTAAAGTTGACGCGACTGTCATCCCATAGAAAGAGAATGGCG</left_flank>
        <right_flank>GCCAACTTTAAAGGCGCACATCTCAAAAACTAATGTAACTAGATAAATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATGTTTAAAACTTTATGAAGATCATTTTTGCAGCTGTCAACTTTTTTCTAGCTGTAACAGTTCTAGAGATAATAGCCTCCAAAGATAGCACGTTAAAAAAGACGCAGAGAAACCAGAGTGCTTTCGTTTCTCTACATATCTCCCATCTTTAAAGCGTTATATCTCTAGAAATACGATAGCTATGAAAAATTTGTAAATTGCAAAAATAATCAGCATAAAATTTCACACAACTTGGCAAAAATTAAATTTGGATAGCTTTTGCTTTTCTTAAGACAGAGCGTTCCATGGACAAGCTATCATTTTTTCAAGTGTTTCAGAGTTAAGACTCTTTATCTCCATAACGGGGACGGATATCAAAAACTTGTTCATTAATAAAATTTATAAAATTTTATAAGAAACATTTTTGGAGTTGACAACTTTTTTCTAGCTATTGTAGTTTTAGAGATATGCGCCTCTAAAGTTGACGCGACTGTCATCCCATAGAAAGAGAATGGCGCGCCAACTTTAAAGGCGCACATCTCAAAAACTAATGTAACTAGATAAATTTATCAAATCGTAAACATGTTTAAAATTTTATAAGAAACATTTTGCAATTGACAACTTTTTCCTAGCTATGATCGTTTTCGAGATATATGTCTTCGAAAGAAACGAGAGAGCTCTCGCTTCTCTGCATCTCTTCCCATCTTTCAAGCTCTATATCTCGGAAACGGTAAAAGTTATTGAAAAACTACTAACTAATAAAATGTCTCTGCAATTTTATGCTGATAATTATTGCGATTGATAAATTTTTCAAAGCTATCATAGTTTTAGAGAAATGAGTCTTTAAAGATAGCATTCTCGCTTCTCTGTGCCTCACTAAACCCACCAACAACAAATCGATCGAATAAAACCCCCAAAAAATGTTATGATCATTATAATCATCATTATATTTCACATTTATCACAAAAATCATTCGGGCAATCAATAAAAACGACGGGACCAAATACAATAATTGACC</canonical>
            <polymorphic>AAAATGTTTAAAACTTTATGAAGATCATTTTTGCAGCTGTCAACTTTTTTCTAGCTGTAACAGTTCTAGAGATAATAGCCTCCAAAGATAGCACGTTAAAAAAGACGCAGAGAAACCAGAGTGCTTTCGTTTCTCTACATATCTCCCATCTTTAAAGCGTTATATCTCTAGAAATACGATAGCTATGAAAAATTTGTAAATTGCAAAAATAATCAGCATAAAATTTCACACAACTTGGCAAAAATTAAATTTGGATAGCTTTTGCTTTTCTTAAGACAGAGCGTTCCATGGACAAGCTATCATTTTTTCAAGTGTTTCAGAGTTAAGACTCTTTATCTCCATAACGGGGACGGATATCAAAAACTTGTTCATTAATAAAATTTATAAAATTTTATAAGAAACATTTTTGGAGTTGACAACTTTTTTCTAGCTATTGTAGTTTTAGAGATATGCGCCTCTAAAGTTGACGCGACTGTCATCCCATAGAAAGAGAATGGCGYGCCAACTTTAAAGGCGCACATCTCAAAAACTAATGTAACTAGATAAATTTATCAAATCGTAAACATGTTTAAAATTTTATAAGAAACATTTTGCAATTGACAACTTTTTCCTAGCTATGATCGTTTTCGAGATATATGTCTTCGAAAGAAACGAGAGAGCTCTCGCTTCTCTGCATCTCTTCCCATCTTTCAAGCTCTATATCTCGGAAACGGTAAAAGTTATTGAAAAACTACTAACTAATAAAATGTCTCTGCAATTTTATGCTGATAATTATTGCGATTGATAAATTTTTCAAAGCTATCATAGTTTTAGAGAAATGAGTCTTTAAAGATAGCATTCTCGCTTCTCTGTGCCTCACTAAACCCACCAACAACAAATCGATCGAATAAAACCCCCAAAAAATGTTATGATCATTATAATCATCATTATATTTCACATTTATCACAAAAATCATTCGGGCAATCAATAAAAACGACGGGACCAAATACAATAATTGACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 469 30</canonical_bands>
                <polymorphic_bands>531 469</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCGCGCC</site>
                <isoschizomers>
                    <enzyme>AscI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>484 454 45 15 2</canonical_bands>
                <polymorphic_bands>484 454 62</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGCGC</site>
                <isoschizomers>
                    <enzyme>BsePI</enzyme>
                    <enzyme>BssHII</enzyme>
                    <enzyme>PauI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTCTGAAAATAGAAGTTTTGAGT</pcr_primer_p1>
		<pcr_primer_p2>TTGTTGTTGGTGGGTTTAGT</pcr_primer_p2>
		<pcr_amplicon_size>943</pcr_amplicon_size>
		<canonical_amplicon>GCGCCAACTTTAAAGGCGCACATCTCAAAAACTAATGTAACTAGATAAATTTATCAAATCGTAAACATGTTTAAAATTTTATAAGAAACATTTTGCAATTGACAACTTTTTCCTAGCTATGATCGTTTTCGAGATATATGTCTTCGAAAGAAACGAGAGAGCTCTCGCTTCTCTGCATCTCTTCCCATCTTTCAAGCTCTATATCTCGGAAACGGTAAAAGTTATTGAAAAACTACTAACTAATAAAATGTCTCTGCAATTTTATGCTGATAATTATTGCGATTGATAAATTTTTCAAAGCTATCATAGTTTTAGAGAAATGAGTCTTTAAAGATAGCATTCTCGCTTCTCTGTGCCTCACTAAACCCACCAACAACAA</canonical_amplicon>
		<polymorphic_amplicon>GYGCCAACTTTAAAGGCGCACATCTCAAAAACTAATGTAACTAGATAAATTTATCAAATCGTAAACATGTTTAAAATTTTATAAGAAACATTTTGCAATTGACAACTTTTTCCTAGCTATGATCGTTTTCGAGATATATGTCTTCGAAAGAAACGAGAGAGCTCTCGCTTCTCTGCATCTCTTCCCATCTTTCAAGCTCTATATCTCGGAAACGGTAAAAGTTATTGAAAAACTACTAACTAATAAAATGTCTCTGCAATTTTATGCTGATAATTATTGCGATTGATAAATTTTTCAAAGCTATCATAGTTTTAGAGAAATGAGTCTTTAAAGATAGCATTCTCGCTTCTCTGTGCCTCACTAAACCCACCAACAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30318</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>97107</contig_pos>
        <strand></strand>
        <context>tcaagctcta[T/A]atctcggaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AACGAGAGAGCTCTCGCTTCTCTGCATCTCTTCCCATCTTTCAAGCTCTA</left_flank>
        <right_flank>ATCTCGGAAACGGTAAAAGTTATTGAAAAACTACTAACTAATAAAATGTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCAAAAATAATCAGCATAAAATTTCACACAACTTGGCAAAAATTAAATTTGGATAGCTTTTGCTTTTCTTAAGACAGAGCGTTCCATGGACAAGCTATCATTTTTTCAAGTGTTTCAGAGTTAAGACTCTTTATCTCCATAACGGGGACGGATATCAAAAACTTGTTCATTAATAAAATTTATAAAATTTTATAAGAAACATTTTTGGAGTTGACAACTTTTTTCTAGCTATTGTAGTTTTAGAGATATGCGCCTCTAAAGTTGACGCGACTGTCATCCCATAGAAAGAGAATGGCGCGCCAACTTTAAAGGCGCACATCTCAAAAACTAATGTAACTAGATAAATTTATCAAATCGTAAACATGTTTAAAATTTTATAAGAAACATTTTGCAATTGACAACTTTTTCCTAGCTATGATCGTTTTCGAGATATATGTCTTCGAAAGAAACGAGAGAGCTCTCGCTTCTCTGCATCTCTTCCCATCTTTCAAGCTCTATATCTCGGAAACGGTAAAAGTTATTGAAAAACTACTAACTAATAAAATGTCTCTGCAATTTTATGCTGATAATTATTGCGATTGATAAATTTTTCAAAGCTATCATAGTTTTAGAGAAATGAGTCTTTAAAGATAGCATTCTCGCTTCTCTGTGCCTCACTAAACCCACCAACAACAAATCGATCGAATAAAACCCCCAAAAAATGTTATGATCATTATAATCATCATTATATTTCACATTTATCACAAAAATCATTCGGGCAATCAATAAAAACGACGGGACCAAATACAATAATTGACCGAAATATTTCAAATTCTCAATTGTATCCGAGTAGGCATGGCTACAGCCCAAAAACGCTGTGGAATTGGCCATTTTTTGTACAAAAAGGAGTAATGGGAAGTAGAAGTCACGAAAAATATGTTTGAAAAAATTATGACAAAAAATTTTGATACAAAAATTTTAGAGAAAATCAGATCATGCTTCAGTGAATCTGTCAGTCT</canonical>
            <polymorphic>TTGCAAAAATAATCAGCATAAAATTTCACACAACTTGGCAAAAATTAAATTTGGATAGCTTTTGCTTTTCTTAAGACAGAGCGTTCCATGGACAAGCTATCATTTTTTCAAGTGTTTCAGAGTTAAGACTCTTTATCTCCATAACGGGGACGGATATCAAAAACTTGTTCATTAATAAAATTTATAAAATTTTATAAGAAACATTTTTGGAGTTGACAACTTTTTTCTAGCTATTGTAGTTTTAGAGATATGCGCCTCTAAAGTTGACGCGACTGTCATCCCATAGAAAGAGAATGGCGCGCCAACTTTAAAGGCGCACATCTCAAAAACTAATGTAACTAGATAAATTTATCAAATCGTAAACATGTTTAAAATTTTATAAGAAACATTTTGCAATTGACAACTTTTTCCTAGCTATGATCGTTTTCGAGATATATGTCTTCGAAAGAAACGAGAGAGCTCTCGCTTCTCTGCATCTCTTCCCATCTTTCAAGCTCTAWATCTCGGAAACGGTAAAAGTTATTGAAAAACTACTAACTAATAAAATGTCTCTGCAATTTTATGCTGATAATTATTGCGATTGATAAATTTTTCAAAGCTATCATAGTTTTAGAGAAATGAGTCTTTAAAGATAGCATTCTCGCTTCTCTGTGCCTCACTAAACCCACCAACAACAAATCGATCGAATAAAACCCCCAAAAAATGTTATGATCATTATAATCATCATTATATTTCACATTTATCACAAAAATCATTCGGGCAATCAATAAAAACGACGGGACCAAATACAATAATTGACCGAAATATTTCAAATTCTCAATTGTATCCGAGTAGGCATGGCTACAGCCCAAAAACGCTGTGGAATTGGCCATTTTTTGTACAAAAAGGAGTAATGGGAAGTAGAAGTCACGAAAAATATGTTTGAAAAAATTATGACAAAAAATTTTGATACAAAAATTTTAGAGAAAATCAGATCATGCTTCAGTGAATCTGTCAGTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCTGAAAATAGAAGTTTTGAGT</pcr_primer_p1>
		<pcr_primer_p2>TTGTTGTTGGTGGGTTTAGT</pcr_primer_p2>
		<pcr_amplicon_size>943</pcr_amplicon_size>
		<canonical_amplicon>ATATCTCGGAAACGGTAAAAGTTATTGAAAAACTACTAACTAATAAAATGTCTCTGCAATTTTATGCTGATAATTATTGCGATTGATAAATTTTTCAAAGCTATCATAGTTTTAGAGAAATGAGTCTTTAAAGATAGCATTCTCGCTTCTCTGTGCCTCACTAAACCCACCAACAACAA</canonical_amplicon>
		<polymorphic_amplicon>AWATCTCGGAAACGGTAAAAGTTATTGAAAAACTACTAACTAATAAAATGTCTCTGCAATTTTATGCTGATAATTATTGCGATTGATAAATTTTTCAAAGCTATCATAGTTTTAGAGAAATGAGTCTTTAAAGATAGCATTCTCGCTTCTCTGTGCCTCACTAAACCCACCAACAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30319</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>97148</contig_pos>
        <strand></strand>
        <context>ctactaacta[A/C]taaaatgtct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAAGCTCTATATCTCGGAAACGGTAAAAGTTATTGAAAAACTACTAACTA</left_flank>
        <right_flank>TAAAATGTCTCTGCAATTTTATGCTGATAATTATTGCGATTGATAAATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTAAATTTGGATAGCTTTTGCTTTTCTTAAGACAGAGCGTTCCATGGACAAGCTATCATTTTTTCAAGTGTTTCAGAGTTAAGACTCTTTATCTCCATAACGGGGACGGATATCAAAAACTTGTTCATTAATAAAATTTATAAAATTTTATAAGAAACATTTTTGGAGTTGACAACTTTTTTCTAGCTATTGTAGTTTTAGAGATATGCGCCTCTAAAGTTGACGCGACTGTCATCCCATAGAAAGAGAATGGCGCGCCAACTTTAAAGGCGCACATCTCAAAAACTAATGTAACTAGATAAATTTATCAAATCGTAAACATGTTTAAAATTTTATAAGAAACATTTTGCAATTGACAACTTTTTCCTAGCTATGATCGTTTTCGAGATATATGTCTTCGAAAGAAACGAGAGAGCTCTCGCTTCTCTGCATCTCTTCCCATCTTTCAAGCTCTATATCTCGGAAACGGTAAAAGTTATTGAAAAACTACTAACTAATAAAATGTCTCTGCAATTTTATGCTGATAATTATTGCGATTGATAAATTTTTCAAAGCTATCATAGTTTTAGAGAAATGAGTCTTTAAAGATAGCATTCTCGCTTCTCTGTGCCTCACTAAACCCACCAACAACAAATCGATCGAATAAAACCCCCAAAAAATGTTATGATCATTATAATCATCATTATATTTCACATTTATCACAAAAATCATTCGGGCAATCAATAAAAACGACGGGACCAAATACAATAATTGACCGAAATATTTCAAATTCTCAATTGTATCCGAGTAGGCATGGCTACAGCCCAAAAACGCTGTGGAATTGGCCATTTTTTGTACAAAAAGGAGTAATGGGAAGTAGAAGTCACGAAAAATATGTTTGAAAAAATTATGACAAAAAATTTTGATACAAAAATTTTAGAGAAAATCAGATCATGCTTCAGTGAATCTGTCAGTCTCAAAATCAGGTGTGCTCATTAGCATATCTCAGAAACTGGAA</canonical>
            <polymorphic>AAATTAAATTTGGATAGCTTTTGCTTTTCTTAAGACAGAGCGTTCCATGGACAAGCTATCATTTTTTCAAGTGTTTCAGAGTTAAGACTCTTTATCTCCATAACGGGGACGGATATCAAAAACTTGTTCATTAATAAAATTTATAAAATTTTATAAGAAACATTTTTGGAGTTGACAACTTTTTTCTAGCTATTGTAGTTTTAGAGATATGCGCCTCTAAAGTTGACGCGACTGTCATCCCATAGAAAGAGAATGGCGCGCCAACTTTAAAGGCGCACATCTCAAAAACTAATGTAACTAGATAAATTTATCAAATCGTAAACATGTTTAAAATTTTATAAGAAACATTTTGCAATTGACAACTTTTTCCTAGCTATGATCGTTTTCGAGATATATGTCTTCGAAAGAAACGAGAGAGCTCTCGCTTCTCTGCATCTCTTCCCATCTTTCAAGCTCTATATCTCGGAAACGGTAAAAGTTATTGAAAAACTACTAACTAMTAAAATGTCTCTGCAATTTTATGCTGATAATTATTGCGATTGATAAATTTTTCAAAGCTATCATAGTTTTAGAGAAATGAGTCTTTAAAGATAGCATTCTCGCTTCTCTGTGCCTCACTAAACCCACCAACAACAAATCGATCGAATAAAACCCCCAAAAAATGTTATGATCATTATAATCATCATTATATTTCACATTTATCACAAAAATCATTCGGGCAATCAATAAAAACGACGGGACCAAATACAATAATTGACCGAAATATTTCAAATTCTCAATTGTATCCGAGTAGGCATGGCTACAGCCCAAAAACGCTGTGGAATTGGCCATTTTTTGTACAAAAAGGAGTAATGGGAAGTAGAAGTCACGAAAAATATGTTTGAAAAAATTATGACAAAAAATTTTGATACAAAAATTTTAGAGAAAATCAGATCATGCTTCAGTGAATCTGTCAGTCTCAAAATCAGGTGTGCTCATTAGCATATCTCAGAAACTGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCTGAAAATAGAAGTTTTGAGT</pcr_primer_p1>
		<pcr_primer_p2>TTGTTGTTGGTGGGTTTAGT</pcr_primer_p2>
		<pcr_amplicon_size>943</pcr_amplicon_size>
		<canonical_amplicon>AATAAAATGTCTCTGCAATTTTATGCTGATAATTATTGCGATTGATAAATTTTTCAAAGCTATCATAGTTTTAGAGAAATGAGTCTTTAAAGATAGCATTCTCGCTTCTCTGTGCCTCACTAAACCCACCAACAACAA</canonical_amplicon>
		<polymorphic_amplicon>AMTAAAATGTCTCTGCAATTTTATGCTGATAATTATTGCGATTGATAAATTTTTCAAAGCTATCATAGTTTTAGAGAAATGAGTCTTTAAAGATAGCATTCTCGCTTCTCTGTGCCTCACTAAACCCACCAACAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30320</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>97192</contig_pos>
        <strand></strand>
        <context>ttgcgattga[T/C]aaatttktca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAACTAATAAAATGTCTCTGCAATTTTATGCTGATAATTATTGCGATTGA</left_flank>
        <right_flank>AAATTTTTCAAAGCTATCATAGTTTTAGAGAAATGAGTCTTTAAAGATAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATGGACAAGCTATCATTTTTTCAAGTGTTTCAGAGTTAAGACTCTTTATCTCCATAACGGGGACGGATATCAAAAACTTGTTCATTAATAAAATTTATAAAATTTTATAAGAAACATTTTTGGAGTTGACAACTTTTTTCTAGCTATTGTAGTTTTAGAGATATGCGCCTCTAAAGTTGACGCGACTGTCATCCCATAGAAAGAGAATGGCGCGCCAACTTTAAAGGCGCACATCTCAAAAACTAATGTAACTAGATAAATTTATCAAATCGTAAACATGTTTAAAATTTTATAAGAAACATTTTGCAATTGACAACTTTTTCCTAGCTATGATCGTTTTCGAGATATATGTCTTCGAAAGAAACGAGAGAGCTCTCGCTTCTCTGCATCTCTTCCCATCTTTCAAGCTCTATATCTCGGAAACGGTAAAAGTTATTGAAAAACTACTAACTAATAAAATGTCTCTGCAATTTTATGCTGATAATTATTGCGATTGATAAATTTTTCAAAGCTATCATAGTTTTAGAGAAATGAGTCTTTAAAGATAGCATTCTCGCTTCTCTGTGCCTCACTAAACCCACCAACAACAAATCGATCGAATAAAACCCCCAAAAAATGTTATGATCATTATAATCATCATTATATTTCACATTTATCACAAAAATCATTCGGGCAATCAATAAAAACGACGGGACCAAATACAATAATTGACCGAAATATTTCAAATTCTCAATTGTATCCGAGTAGGCATGGCTACAGCCCAAAAACGCTGTGGAATTGGCCATTTTTTGTACAAAAAGGAGTAATGGGAAGTAGAAGTCACGAAAAATATGTTTGAAAAAATTATGACAAAAAATTTTGATACAAAAATTTTAGAGAAAATCAGATCATGCTTCAGTGAATCTGTCAGTCTCAAAATCAGGTGTGCTCATTAGCATATCTCAGAAACTGGAAACTTTCGAAAAAAGTTGTCAATTAGCAAAATATTTAGCATAAAG</canonical>
            <polymorphic>CCATGGACAAGCTATCATTTTTTCAAGTGTTTCAGAGTTAAGACTCTTTATCTCCATAACGGGGACGGATATCAAAAACTTGTTCATTAATAAAATTTATAAAATTTTATAAGAAACATTTTTGGAGTTGACAACTTTTTTCTAGCTATTGTAGTTTTAGAGATATGCGCCTCTAAAGTTGACGCGACTGTCATCCCATAGAAAGAGAATGGCGCGCCAACTTTAAAGGCGCACATCTCAAAAACTAATGTAACTAGATAAATTTATCAAATCGTAAACATGTTTAAAATTTTATAAGAAACATTTTGCAATTGACAACTTTTTCCTAGCTATGATCGTTTTCGAGATATATGTCTTCGAAAGAAACGAGAGAGCTCTCGCTTCTCTGCATCTCTTCCCATCTTTCAAGCTCTATATCTCGGAAACGGTAAAAGTTATTGAAAAACTACTAACTAATAAAATGTCTCTGCAATTTTATGCTGATAATTATTGCGATTGAYAAATTTTTCAAAGCTATCATAGTTTTAGAGAAATGAGTCTTTAAAGATAGCATTCTCGCTTCTCTGTGCCTCACTAAACCCACCAACAACAAATCGATCGAATAAAACCCCCAAAAAATGTTATGATCATTATAATCATCATTATATTTCACATTTATCACAAAAATCATTCGGGCAATCAATAAAAACGACGGGACCAAATACAATAATTGACCGAAATATTTCAAATTCTCAATTGTATCCGAGTAGGCATGGCTACAGCCCAAAAACGCTGTGGAATTGGCCATTTTTTGTACAAAAAGGAGTAATGGGAAGTAGAAGTCACGAAAAATATGTTTGAAAAAATTATGACAAAAAATTTTGATACAAAAATTTTAGAGAAAATCAGATCATGCTTCAGTGAATCTGTCAGTCTCAAAATCAGGTGTGCTCATTAGCATATCTCAGAAACTGGAAACTTTCGAAAAAAGTTGTCAATTAGCAAAATATTTAGCATAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCTGAAAATAGAAGTTTTGAGT</pcr_primer_p1>
		<pcr_primer_p2>TTGTTGTTGGTGGGTTTAGT</pcr_primer_p2>
		<pcr_amplicon_size>943</pcr_amplicon_size>
		<canonical_amplicon>ATAAATTTTTCAAAGCTATCATAGTTTTAGAGAAATGAGTCTTTAAAGATAGCATTCTCGCTTCTCTGTGCCTCACTAAACCCACCAACAACAA</canonical_amplicon>
		<polymorphic_amplicon>AYAAATTTTTCAAAGCTATCATAGTTTTAGAGAAATGAGTCTTTAAAGATAGCATTCTCGCTTCTCTGTGCCTCACTAAACCCACCAACAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30321</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>97199</contig_pos>
        <strand></strand>
        <context>tgayaaattt[T/G]tcaaagctat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TAAAATGTCTCTGCAATTTTATGCTGATAATTATTGCGATTGATAAATTT</left_flank>
        <right_flank>TCAAAGCTATCATAGTTTTAGAGAAATGAGTCTTTAAAGATAGCATTCTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGCTATCATTTTTTCAAGTGTTTCAGAGTTAAGACTCTTTATCTCCATAACGGGGACGGATATCAAAAACTTGTTCATTAATAAAATTTATAAAATTTTATAAGAAACATTTTTGGAGTTGACAACTTTTTTCTAGCTATTGTAGTTTTAGAGATATGCGCCTCTAAAGTTGACGCGACTGTCATCCCATAGAAAGAGAATGGCGCGCCAACTTTAAAGGCGCACATCTCAAAAACTAATGTAACTAGATAAATTTATCAAATCGTAAACATGTTTAAAATTTTATAAGAAACATTTTGCAATTGACAACTTTTTCCTAGCTATGATCGTTTTCGAGATATATGTCTTCGAAAGAAACGAGAGAGCTCTCGCTTCTCTGCATCTCTTCCCATCTTTCAAGCTCTATATCTCGGAAACGGTAAAAGTTATTGAAAAACTACTAACTAATAAAATGTCTCTGCAATTTTATGCTGATAATTATTGCGATTGATAAATTTTTCAAAGCTATCATAGTTTTAGAGAAATGAGTCTTTAAAGATAGCATTCTCGCTTCTCTGTGCCTCACTAAACCCACCAACAACAAATCGATCGAATAAAACCCCCAAAAAATGTTATGATCATTATAATCATCATTATATTTCACATTTATCACAAAAATCATTCGGGCAATCAATAAAAACGACGGGACCAAATACAATAATTGACCGAAATATTTCAAATTCTCAATTGTATCCGAGTAGGCATGGCTACAGCCCAAAAACGCTGTGGAATTGGCCATTTTTTGTACAAAAAGGAGTAATGGGAAGTAGAAGTCACGAAAAATATGTTTGAAAAAATTATGACAAAAAATTTTGATACAAAAATTTTAGAGAAAATCAGATCATGCTTCAGTGAATCTGTCAGTCTCAAAATCAGGTGTGCTCATTAGCATATCTCAGAAACTGGAAACTTTCGAAAAAAGTTGTCAATTAGCAAAATATTTAGCATAAAGTGTTATA</canonical>
            <polymorphic>CAAGCTATCATTTTTTCAAGTGTTTCAGAGTTAAGACTCTTTATCTCCATAACGGGGACGGATATCAAAAACTTGTTCATTAATAAAATTTATAAAATTTTATAAGAAACATTTTTGGAGTTGACAACTTTTTTCTAGCTATTGTAGTTTTAGAGATATGCGCCTCTAAAGTTGACGCGACTGTCATCCCATAGAAAGAGAATGGCGCGCCAACTTTAAAGGCGCACATCTCAAAAACTAATGTAACTAGATAAATTTATCAAATCGTAAACATGTTTAAAATTTTATAAGAAACATTTTGCAATTGACAACTTTTTCCTAGCTATGATCGTTTTCGAGATATATGTCTTCGAAAGAAACGAGAGAGCTCTCGCTTCTCTGCATCTCTTCCCATCTTTCAAGCTCTATATCTCGGAAACGGTAAAAGTTATTGAAAAACTACTAACTAATAAAATGTCTCTGCAATTTTATGCTGATAATTATTGCGATTGATAAATTTKTCAAAGCTATCATAGTTTTAGAGAAATGAGTCTTTAAAGATAGCATTCTCGCTTCTCTGTGCCTCACTAAACCCACCAACAACAAATCGATCGAATAAAACCCCCAAAAAATGTTATGATCATTATAATCATCATTATATTTCACATTTATCACAAAAATCATTCGGGCAATCAATAAAAACGACGGGACCAAATACAATAATTGACCGAAATATTTCAAATTCTCAATTGTATCCGAGTAGGCATGGCTACAGCCCAAAAACGCTGTGGAATTGGCCATTTTTTGTACAAAAAGGAGTAATGGGAAGTAGAAGTCACGAAAAATATGTTTGAAAAAATTATGACAAAAAATTTTGATACAAAAATTTTAGAGAAAATCAGATCATGCTTCAGTGAATCTGTCAGTCTCAAAATCAGGTGTGCTCATTAGCATATCTCAGAAACTGGAAACTTTCGAAAAAAGTTGTCAATTAGCAAAATATTTAGCATAAAGTGTTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCTGAAAATAGAAGTTTTGAGT</pcr_primer_p1>
		<pcr_primer_p2>TTGTTGTTGGTGGGTTTAGT</pcr_primer_p2>
		<pcr_amplicon_size>943</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAAGCTATCATAGTTTTAGAGAAATGAGTCTTTAAAGATAGCATTCTCGCTTCTCTGTGCCTCACTAAACCCACCAACAACAA</canonical_amplicon>
		<polymorphic_amplicon>TKTCAAAGCTATCATAGTTTTAGAGAAATGAGTCTTTAAAGATAGCATTCTCGCTTCTCTGTGCCTCACTAAACCCACCAACAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30322</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>97363</contig_pos>
        <strand></strand>
        <context>CAAAAATCAT[T/C]CGGGCAATCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTATGATCATTATAATCATCATTATATTTCACATTTATCACAAAAATCAT</left_flank>
        <right_flank>CGGGCAATCAATAAAAACGACGGGACCAAATACAATAATTGACCGAAATA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAAAGTTGACGCGACTGTCATCCCATAGAAAGAGAATGGCGCGCCAACTTTAAAGGCGCACATCTCAAAAACTAATGTAACTAGATAAATTTATCAAATCGTAAACATGTTTAAAATTTTATAAGAAACATTTTGCAATTGACAACTTTTTCCTAGCTATGATCGTTTTCGAGATATATGTCTTCGAAAGAAACGAGAGAGCTCTCGCTTCTCTGCATCTCTTCCCATCTTTCAAGCTCTATATCTCGGAAACGGTAAAAGTTATTGAAAAACTACTAACTAATAAAATGTCTCTGCAATTTTATGCTGATAATTATTGCGATTGATAAATTTTTCAAAGCTATCATAGTTTTAGAGAAATGAGTCTTTAAAGATAGCATTCTCGCTTCTCTGTGCCTCACTAAACCCACCAACAACAAATCGATCGAATAAAACCCCCAAAAAATGTTATGATCATTATAATCATCATTATATTTCACATTTATCACAAAAATCATTCGGGCAATCAATAAAAACGACGGGACCAAATACAATAATTGACCGAAATATTTCAAATTCTCAATTGTATCCGAGTAGGCATGGCTACAGCCCAAAAACGCTGTGGAATTGGCCATTTTTTGTACAAAAAGGAGTAATGGGAAGTAGAAGTCACGAAAAATATGTTTGAAAAAATTATGACAAAAAATTTTGATACAAAAATTTTAGAGAAAATCAGATCATGCTTCAGTGAATCTGTCAGTCTCAAAATCAGGTGTGCTCATTAGCATATCTCAGAAACTGGAAACTTTCGAAAAAAGTTGTCAATTAGCAAAATATTTAGCATAAAGTGTTATACATTTTTACAGTTGAGCAATTTTATCTAGCTGAAATAGTTTTTGAGTTATGCGCTTTTAAAGTTGGCGCGCCTTCCTCCTCTCTTGGACGCAAGGCGGAGAGTCCTACAACTTCAAAGACGCATGGCTCAAAAACTACAGTAGATAAAAAATGTTGTTAACTAC</canonical>
            <polymorphic>TCTAAAGTTGACGCGACTGTCATCCCATAGAAAGAGAATGGCGCGCCAACTTTAAAGGCGCACATCTCAAAAACTAATGTAACTAGATAAATTTATCAAATCGTAAACATGTTTAAAATTTTATAAGAAACATTTTGCAATTGACAACTTTTTCCTAGCTATGATCGTTTTCGAGATATATGTCTTCGAAAGAAACGAGAGAGCTCTCGCTTCTCTGCATCTCTTCCCATCTTTCAAGCTCTATATCTCGGAAACGGTAAAAGTTATTGAAAAACTACTAACTAATAAAATGTCTCTGCAATTTTATGCTGATAATTATTGCGATTGATAAATTTTTCAAAGCTATCATAGTTTTAGAGAAATGAGTCTTTAAAGATAGCATTCTCGCTTCTCTGTGCCTCACTAAACCCACCAACAACAAATCGATCGAATAAAACCCCCAAAAAATGTTATGATCATTATAATCATCATTATATTTCACATTTATCACAAAAATCATYCGGGCAATCAATAAAAACGACGGGACCAAATACAATAATTGACCGAAATATTTCAAATTCTCAATTGTATCCGAGTAGGCATGGCTACAGCCCAAAAACGCTGTGGAATTGGCCATTTTTTGTACAAAAAGGAGTAATGGGAAGTAGAAGTCACGAAAAATATGTTTGAAAAAATTATGACAAAAAATTTTGATACAAAAATTTTAGAGAAAATCAGATCATGCTTCAGTGAATCTGTCAGTCTCAAAATCAGGTGTGCTCATTAGCATATCTCAGAAACTGGAAACTTTCGAAAAAAGTTGTCAATTAGCAAAATATTTAGCATAAAGTGTTATACATTTTTACAGTTGAGCAATTTTATCTAGCTGAAATAGTTTTTGAGTTATGCGCTTTTAAAGTTGGCGCGCCTTCCTCCTCTCTTGGACGCAAGGCGGAGAGTCCTACAACTTCAAAGACGCATGGCTCAAAAACTACAGTAGATAAAAAATGTTGTTAACTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAACCCACCAACAACAAAT</pcr_primer_p1>
		<pcr_primer_p2>GACTTCTACTTCCCATTACTCCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAAACCCACCAACAACAAATCGATCGAATAAAACCCCCAAAAAATGTTATGATCATTATAATCATCATTATATTTCACATTTATCACAAAAATCATTCGGGCAATCAATAAAAACGACGGGACCAAATACAATAATTGACCGAAATATTTCAAATTCTCAATTGTATCCGAGTAGGCATGGCTACAGCCCAAAAACGCTGTGGAATTGGCCATTTTTTGTACAAAAAGGAGTAATGGGAAGTAGAAGTC</canonical_amplicon>
		<polymorphic_amplicon>TAAACCCACCAACAACAAATCGATCGAATAAAACCCCCAAAAAATGTTATGATCATTATAATCATCATTATATTTCACATTTATCACAAAAATCATYCGGGCAATCAATAAAAACGACGGGACCAAATACAATAATTGACCGAAATATTTCAAATTCTCAATTGTATCCGAGTAGGCATGGCTACAGCCCAAAAACGCTGTGGAATTGGCCATTTTTTGTACAAAAAGGAGTAATGGGAAGTAGAAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30323</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>101444</contig_pos>
        <strand>+</strand>
        <context>tttatgATAA[A/C]AAAGCtaaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGCTAGAAAAATGTACTCAGCTGGTAAAATGTGTGAAATTTTATGATAA</left_flank>
        <right_flank>AAAGCTAAATTTTAAAAATTTTAAATTGCTCAAGCCCTTTACGAGATACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGATCAGAAGACATAATGTACAGAATAAATAGAAAAATTGAATCAGATATTTGAAATTTTCAAGATGAGGCGAGTATTCCGAACTGCAGTTTTTCCCGTAACTTGCATATTCCAGTTCTGTGGAGAGCAGCATTTTTATAATCAGGGGATGATTTGAGAGCTGAAAATTATTTTTTTTTTTGAAGATGAGAGTGAGAGGAAGTGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGACAAGAAACTTCAAATCGCTGTATCTCAAGAATGGTTGTAGCTATGAAAATTTTGTCAACTACGAAAATTAACCTTATAAAATTTTACATACTTTCACAGTTTAACTAATTTATCTAGCTACTGTAGGTTTTGAGCTGTGTGATTTTAAAGTTGACGCAGACATTTCGACGGCGTGTGGCACTTTGAAGCGCTATATCTCGAGGACTACCAAAGCTAGAAAAATGTACTCAGCTGGTAAAATGTGTGAAATTTTATGATAAAAAAGCTAAATTTTAAAAATTTTAAATTGCTCAAGCCCTTTACGAGATACAGAGCCGCAAAAAAGTACCCTTTTTTGGCTCTGGATCTAGTTTAATCCGCCCGGGGGTCTGGCCGGGCCCTGATTTTTGTTGCAAATATGGTTTAAAACAGCCCAAAAACTTCTAGAAACGAATTGTTGACAACAAGAGCTAACTAAAAAGCTAGTAATCAGTAGAAAGAATAAAAATAGAGAACCCCGACAGAGAGAAAGAGAGACTTCAGAGAAAAAATAGAGAGAATAATTTAATTTATGGTTAGAAGAAACGTGTTACGCGTTCTGCCTAGCAACCGCTTCAGAAGACGTGAAAATCAGAATTTCCAGAAAAATCGAAAATTTCTAATTTTCCATTTACGAGACAGTGAAAGCCCCCCCCCCTGCTTGCCAAAAGGCGCACTCTCTTGTACACCCTCCGTCACCTTTGCTCCATTGCACCCGGTGGCCTTAAGGCTAACGCGCCTGA</canonical>
            <polymorphic>TAGATCAGAAGACATAATGTACAGAATAAATAGAAAAATTGAATCAGATATTTGAAATTTTCAAGATGAGGCGAGTATTCCGAACTGCAGTTTTTCCCGTAACTTGCATATTCCAGTTCTGTGGAGAGCAGCATTTTTATAATCAGGGGATGATTTGAGAGCTGAAAATTATTTTTTTTTTTGAAGATGAGAGTGAGAGGAAGTGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGACAAGAAACTTCAAATCGCTGTATCTCAAGAATGGTTGTAGCTATGAAAATTTTGTCAACTACGAAAATTAACCTTATAAAATTTTACATACTTTCACAGTTTAACTAATTTATCTAGCTACTGTAGGTTTTGAGCTGTGTGATTTTAAAGTTGACGCAGACATTTCGACGGCGTGTGGCACTTTGAAGCGCTATATCTCGAGGACTACCAAAGCTAGAAAAATGTACTCAGCTGGTAAAATGTGTGAAATTTTATGATAAMAAAGCTAAATTTTAAAAATTTTAAATTGCTCAAGCCCTTTACGAGATACAGAGCCGCAAAAAAGTACCCTTTTTTGGCTCTGGATCTAGTTTAATCCGCCCGGGGGTCTGGCCGGGCCCTGATTTTTGTTGCAAATATGGTTTAAAACAGCCCAAAAACTTCTAGAAACGAATTGTTGACAACAAGAGCTAACTAAAAAGCTAGTAATCAGTAGAAAGAATAAAAATAGAGAACCCCGACAGAGAGAAAGAGAGACTTCAGAGAAAAAATAGAGAGAATAATTTAATTTATGGTTAGAAGAAACGTGTTACGCGTTCTGCCTAGCAACCGCTTCAGAAGACGTGAAAATCAGAATTTCCAGAAAAATCGAAAATTTCTAATTTTCCATTTACGAGACAGTGAAAGCCCCCCCCCCTGCTTGCCAAAAGGCGCACTCTCTTGTACACCCTCCGTCACCTTTGCTCCATTGCACCCGGTGGCCTTAAGGCTAACGCGCCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTGCGAGAGAGAGAGAGA</pcr_primer_p1>
		<pcr_primer_p2>AACTAGATCCAGAGCCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>391</pcr_amplicon_size>
		<canonical_amplicon>AAGTGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGACAAGAAACTTCAAATCGCTGTATCTCAAGAATGGTTGTAGCTATGAAAATTTTGTCAACTACGAAAATTAACCTTATAAAATTTTACATACTTTCACAGTTTAACTAATTTATCTAGCTACTGTAGGTTTTGAGCTGTGTGATTTTAAAGTTGACGCAGACATTTCGACGGCGTGTGGCACTTTGAAGCGCTATATCTCGAGGACTACCAAAGCTAGAAAAATGTACTCAGCTGGTAAAATGTGTGAAATTTTATGATAAAAAAGCTAAATTTTAAAAATTTTAAATTGCTCAAGCCCTTTACGAGATACAGAGCCGCAAAAAAGTACCCTTTTTTGGCTCTGGATCTAGTT</canonical_amplicon>
		<polymorphic_amplicon>AAGTGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGACAAGAAACTTCAAATCGCTGTATCTCAAGAATGGTTGTAGCTATGAAAATTTTGTCAACTACGAAAATTAACCTTATAAAATTTTACATACTTTCACAGTTTAACTAATTTATCTAGCTACTGTAGGTTTTGAGCTGTGTGATTTTAAAGTTGACGCAGACATTTCGACGGCGTGTGGCACTTTGAAGCGCTATATCTCGAGGACTACCAAAGCTAGAAAAATGTACTCAGCTGGTAAAATGTGTGAAATTTTATGATAAMAAAGCTAAATTTTAAAAATTTTAAATTGCTCAAGCCCTTTACGAGATACAGAGCCGCAAAAAAGTACCCTTTTTTGGCTCTGGATCTAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30324</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>101498</contig_pos>
        <strand>+</strand>
        <context>AGATACAGAG[C/T]CGCWAAAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTAAATTTTAAAAATTTTAAATTGCTCAAGCCCTTTACGAGATACAGAG</left_flank>
        <right_flank>CGCAAAAAAGTACCCTTTTTTGGCTCTGGATCTAGTTTAATCCGCCCGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTTCAAGATGAGGCGAGTATTCCGAACTGCAGTTTTTCCCGTAACTTGCATATTCCAGTTCTGTGGAGAGCAGCATTTTTATAATCAGGGGATGATTTGAGAGCTGAAAATTATTTTTTTTTTTGAAGATGAGAGTGAGAGGAAGTGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGACAAGAAACTTCAAATCGCTGTATCTCAAGAATGGTTGTAGCTATGAAAATTTTGTCAACTACGAAAATTAACCTTATAAAATTTTACATACTTTCACAGTTTAACTAATTTATCTAGCTACTGTAGGTTTTGAGCTGTGTGATTTTAAAGTTGACGCAGACATTTCGACGGCGTGTGGCACTTTGAAGCGCTATATCTCGAGGACTACCAAAGCTAGAAAAATGTACTCAGCTGGTAAAATGTGTGAAATTTTATGATAAAAAAGCTAAATTTTAAAAATTTTAAATTGCTCAAGCCCTTTACGAGATACAGAGCCGCAAAAAAGTACCCTTTTTTGGCTCTGGATCTAGTTTAATCCGCCCGGGGGTCTGGCCGGGCCCTGATTTTTGTTGCAAATATGGTTTAAAACAGCCCAAAAACTTCTAGAAACGAATTGTTGACAACAAGAGCTAACTAAAAAGCTAGTAATCAGTAGAAAGAATAAAAATAGAGAACCCCGACAGAGAGAAAGAGAGACTTCAGAGAAAAAATAGAGAGAATAATTTAATTTATGGTTAGAAGAAACGTGTTACGCGTTCTGCCTAGCAACCGCTTCAGAAGACGTGAAAATCAGAATTTCCAGAAAAATCGAAAATTTCTAATTTTCCATTTACGAGACAGTGAAAGCCCCCCCCCCTGCTTGCCAAAAGGCGCACTCTCTTGTACACCCTCCGTCACCTTTGCTCCATTGCACCCGGTGGCCTTAAGGCTAACGCGCCTGACTGCCGTTCAGAAGGTCGCGGGTTCGAGTCCGCATGGGAACGAAGGCTTTTTTC</canonical>
            <polymorphic>AAATTTTCAAGATGAGGCGAGTATTCCGAACTGCAGTTTTTCCCGTAACTTGCATATTCCAGTTCTGTGGAGAGCAGCATTTTTATAATCAGGGGATGATTTGAGAGCTGAAAATTATTTTTTTTTTTGAAGATGAGAGTGAGAGGAAGTGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGACAAGAAACTTCAAATCGCTGTATCTCAAGAATGGTTGTAGCTATGAAAATTTTGTCAACTACGAAAATTAACCTTATAAAATTTTACATACTTTCACAGTTTAACTAATTTATCTAGCTACTGTAGGTTTTGAGCTGTGTGATTTTAAAGTTGACGCAGACATTTCGACGGCGTGTGGCACTTTGAAGCGCTATATCTCGAGGACTACCAAAGCTAGAAAAATGTACTCAGCTGGTAAAATGTGTGAAATTTTATGATAAAAAAGCTAAATTTTAAAAATTTTAAATTGCTCAAGCCCTTTACGAGATACAGAGYCGCAAAAAAGTACCCTTTTTTGGCTCTGGATCTAGTTTAATCCGCCCGGGGGTCTGGCCGGGCCCTGATTTTTGTTGCAAATATGGTTTAAAACAGCCCAAAAACTTCTAGAAACGAATTGTTGACAACAAGAGCTAACTAAAAAGCTAGTAATCAGTAGAAAGAATAAAAATAGAGAACCCCGACAGAGAGAAAGAGAGACTTCAGAGAAAAAATAGAGAGAATAATTTAATTTATGGTTAGAAGAAACGTGTTACGCGTTCTGCCTAGCAACCGCTTCAGAAGACGTGAAAATCAGAATTTCCAGAAAAATCGAAAATTTCTAATTTTCCATTTACGAGACAGTGAAAGCCCCCCCCCCTGCTTGCCAAAAGGCGCACTCTCTTGTACACCCTCCGTCACCTTTGCTCCATTGCACCCGGTGGCCTTAAGGCTAACGCGCCTGACTGCCGTTCAGAAGGTCGCGGGTTCGAGTCCGCATGGGAACGAAGGCTTTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>500 232 202 42 24</canonical_bands>
                <polymorphic_bands>542 232 202 24</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>498 425 77</canonical_bands>
                <polymorphic_bands>923 77</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>205 118 107 79 77 74 59 38 34 34 34 30 24 19 18 17 12 8 8 5</canonical_bands>
                <polymorphic_bands>205 118 107 79 77 74 59 43 38 34 34 34 30 18 17 12 8 8 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTGCGAGAGAGAGAGAGA</pcr_primer_p1>
		<pcr_primer_p2>CCATATTTGCAACAAAAATCA</pcr_primer_p2>
		<pcr_amplicon_size>440</pcr_amplicon_size>
		<canonical_amplicon>AAGTGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGACAAGAAACTTCAAATCGCTGTATCTCAAGAATGGTTGTAGCTATGAAAATTTTGTCAACTACGAAAATTAACCTTATAAAATTTTACATACTTTCACAGTTTAACTAATTTATCTAGCTACTGTAGGTTTTGAGCTGTGTGATTTTAAAGTTGACGCAGACATTTCGACGGCGTGTGGCACTTTGAAGCGCTATATCTCGAGGACTACCAAAGCTAGAAAAATGTACTCAGCTGGTAAAATGTGTGAAATTTTATGATAAAAAAGCTAAATTTTAAAAATTTTAAATTGCTCAAGCCCTTTACGAGATACAGAGCCGCAAAAAAGTACCCTTTTTTGGCTCTGGATCTAGTTTAATCCGCCCGGGGGTCTGGCCGGGCCCTGATTTTTGTTGCAAATATGG</canonical_amplicon>
		<polymorphic_amplicon>AAGTGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGACAAGAAACTTCAAATCGCTGTATCTCAAGAATGGTTGTAGCTATGAAAATTTTGTCAACTACGAAAATTAACCTTATAAAATTTTACATACTTTCACAGTTTAACTAATTTATCTAGCTACTGTAGGTTTTGAGCTGTGTGATTTTAAAGTTGACGCAGACATTTCGACGGCGTGTGGCACTTTGAAGCGCTATATCTCGAGGACTACCAAAGCTAGAAAAATGTACTCAGCTGGTAAAATGTGTGAAATTTTATGATAAAAAAGCTAAATTTTAAAAATTTTAAATTGCTCAAGCCCTTTACGAGATACAGAGYCGCAAAAAAGTACCCTTTTTTGGCTCTGGATCTAGTTTAATCCGCCCGGGGGTCTGGCCGGGCCCTGATTTTTGTTGCAAATATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30325</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>101502</contig_pos>
        <strand>+</strand>
        <context>ACAGAGYCGC[A/T]AAAAAGTACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTTAAAAATTTTAAATTGCTCAAGCCCTTTACGAGATACAGAGCCGC</left_flank>
        <right_flank>AAAAAGTACCCTTTTTTGGCTCTGGATCTAGTTTAATCCGCCCGGGGGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAAGATGAGGCGAGTATTCCGAACTGCAGTTTTTCCCGTAACTTGCATATTCCAGTTCTGTGGAGAGCAGCATTTTTATAATCAGGGGATGATTTGAGAGCTGAAAATTATTTTTTTTTTTGAAGATGAGAGTGAGAGGAAGTGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGACAAGAAACTTCAAATCGCTGTATCTCAAGAATGGTTGTAGCTATGAAAATTTTGTCAACTACGAAAATTAACCTTATAAAATTTTACATACTTTCACAGTTTAACTAATTTATCTAGCTACTGTAGGTTTTGAGCTGTGTGATTTTAAAGTTGACGCAGACATTTCGACGGCGTGTGGCACTTTGAAGCGCTATATCTCGAGGACTACCAAAGCTAGAAAAATGTACTCAGCTGGTAAAATGTGTGAAATTTTATGATAAAAAAGCTAAATTTTAAAAATTTTAAATTGCTCAAGCCCTTTACGAGATACAGAGCCGCAAAAAAGTACCCTTTTTTGGCTCTGGATCTAGTTTAATCCGCCCGGGGGTCTGGCCGGGCCCTGATTTTTGTTGCAAATATGGTTTAAAACAGCCCAAAAACTTCTAGAAACGAATTGTTGACAACAAGAGCTAACTAAAAAGCTAGTAATCAGTAGAAAGAATAAAAATAGAGAACCCCGACAGAGAGAAAGAGAGACTTCAGAGAAAAAATAGAGAGAATAATTTAATTTATGGTTAGAAGAAACGTGTTACGCGTTCTGCCTAGCAACCGCTTCAGAAGACGTGAAAATCAGAATTTCCAGAAAAATCGAAAATTTCTAATTTTCCATTTACGAGACAGTGAAAGCCCCCCCCCCTGCTTGCCAAAAGGCGCACTCTCTTGTACACCCTCCGTCACCTTTGCTCCATTGCACCCGGTGGCCTTAAGGCTAACGCGCCTGACTGCCGTTCAGAAGGTCGCGGGTTCGAGTCCGCATGGGAACGAAGGCTTTTTTCTTTT</canonical>
            <polymorphic>TTTCAAGATGAGGCGAGTATTCCGAACTGCAGTTTTTCCCGTAACTTGCATATTCCAGTTCTGTGGAGAGCAGCATTTTTATAATCAGGGGATGATTTGAGAGCTGAAAATTATTTTTTTTTTTGAAGATGAGAGTGAGAGGAAGTGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGACAAGAAACTTCAAATCGCTGTATCTCAAGAATGGTTGTAGCTATGAAAATTTTGTCAACTACGAAAATTAACCTTATAAAATTTTACATACTTTCACAGTTTAACTAATTTATCTAGCTACTGTAGGTTTTGAGCTGTGTGATTTTAAAGTTGACGCAGACATTTCGACGGCGTGTGGCACTTTGAAGCGCTATATCTCGAGGACTACCAAAGCTAGAAAAATGTACTCAGCTGGTAAAATGTGTGAAATTTTATGATAAAAAAGCTAAATTTTAAAAATTTTAAATTGCTCAAGCCCTTTACGAGATACAGAGCCGCWAAAAAGTACCCTTTTTTGGCTCTGGATCTAGTTTAATCCGCCCGGGGGTCTGGCCGGGCCCTGATTTTTGTTGCAAATATGGTTTAAAACAGCCCAAAAACTTCTAGAAACGAATTGTTGACAACAAGAGCTAACTAAAAAGCTAGTAATCAGTAGAAAGAATAAAAATAGAGAACCCCGACAGAGAGAAAGAGAGACTTCAGAGAAAAAATAGAGAGAATAATTTAATTTATGGTTAGAAGAAACGTGTTACGCGTTCTGCCTAGCAACCGCTTCAGAAGACGTGAAAATCAGAATTTCCAGAAAAATCGAAAATTTCTAATTTTCCATTTACGAGACAGTGAAAGCCCCCCCCCCTGCTTGCCAAAAGGCGCACTCTCTTGTACACCCTCCGTCACCTTTGCTCCATTGCACCCGGTGGCCTTAAGGCTAACGCGCCTGACTGCCGTTCAGAAGGTCGCGGGTTCGAGTCCGCATGGGAACGAAGGCTTTTTTCTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTGCGAGAGAGAGAGAGA</pcr_primer_p1>
		<pcr_primer_p2>CCATATTTGCAACAAAAATCA</pcr_primer_p2>
		<pcr_amplicon_size>440</pcr_amplicon_size>
		<canonical_amplicon>AAGTGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGACAAGAAACTTCAAATCGCTGTATCTCAAGAATGGTTGTAGCTATGAAAATTTTGTCAACTACGAAAATTAACCTTATAAAATTTTACATACTTTCACAGTTTAACTAATTTATCTAGCTACTGTAGGTTTTGAGCTGTGTGATTTTAAAGTTGACGCAGACATTTCGACGGCGTGTGGCACTTTGAAGCGCTATATCTCGAGGACTACCAAAGCTAGAAAAATGTACTCAGCTGGTAAAATGTGTGAAATTTTATGATAAAAAAGCTAAATTTTAAAAATTTTAAATTGCTCAAGCCCTTTACGAGATACAGAGCCGCAAAAAAGTACCCTTTTTTGGCTCTGGATCTAGTTTAATCCGCCCGGGGGTCTGGCCGGGCCCTGATTTTTGTTGCAAATATGG</canonical_amplicon>
		<polymorphic_amplicon>AAGTGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGACAAGAAACTTCAAATCGCTGTATCTCAAGAATGGTTGTAGCTATGAAAATTTTGTCAACTACGAAAATTAACCTTATAAAATTTTACATACTTTCACAGTTTAACTAATTTATCTAGCTACTGTAGGTTTTGAGCTGTGTGATTTTAAAGTTGACGCAGACATTTCGACGGCGTGTGGCACTTTGAAGCGCTATATCTCGAGGACTACCAAAGCTAGAAAAATGTACTCAGCTGGTAAAATGTGTGAAATTTTATGATAAAAAAGCTAAATTTTAAAAATTTTAAATTGCTCAAGCCCTTTACGAGATACAGAGCCGCWAAAAAGTACCCTTTTTTGGCTCTGGATCTAGTTTAATCCGCCCGGGGGTCTGGCCGGGCCCTGATTTTTGTTGCAAATATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30326</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>109549</contig_pos>
        <strand>+</strand>
        <context>AACATTTCAA[A/G]AAAGCCAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGGTTCACAGTTTTAGCTGATTAATGGTTTGTCCTACAAACATTTCAA</left_flank>
        <right_flank>AAAGCCAAAAATTCAGAAAATATAGAAATTCAGAAGTTCCGAATTTTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGGTTTTTATATTCTTGGAAGTTTCAAAATTCTCAAATTTTTAGACTTGGAAGTTCAAAAACTAAAAATTTTGAATTCTGAAAATCTGGAACTTCAGGATTCTGAGTATCTGGAAATTCTAAAATTCTGAAATTCTGAAATGATGGAATTTCCAAACTAAAAAGATTTCACAATTCCCTGAAGAGAGCGAAAAGTCTCATCTTTTTTTCAATTGTTTTGCTCCATTTCCCCCTTATCATTGATAAATTGATAAAATTTGAAAAATTCTGACTCATCAATTTTTCCCTATTTTTTCTAATTCTCTCTGTTCTCTCTTAACGATCAATTTGTCCTTCTTTTTTTCGCTTTTTTCATTTTCTCAAAAGCCTTTCGTACTCCCTTTTTTCCTTGTTCTTTATGACCCATTCTCTTTTTTCTTCTTCTTTTCTTTGACCCTTATCATTTTTCATTCGGTTCACAGTTTTAGCTGATTAATGGTTTGTCCTACAAACATTTCAAGAAAGCCAAAAATTCAGAAAATATAGAAATTCAGAAGTTCCGAATTTTTGAAATTCAGAATCTCAAATATCTGAATTTCAGTAATTTGGAGTTCCAAAATACTTCTGAAAAGTCTAAGAAATCTAGAAATTTCAAAATTTCAAAACATTATTATATTTTTTTTGAAATTTTTCAAAAAACGGAGCTTCCGGTGGTGTAAAAATAGGATTTTTATCATTGTTTCTTATCTAGTCTTCTACCTTTTTTCCCCCATTAAATCGAGAATAAATAAACAGAGAAAATGAGAGAAAGAAGAAGAAAAAAATGCATAAATATAAATCATCTGGTTTATGTGACTAATTTATTGGCTTCTTTCGTTTTTCTTCAGATTTTCGGATTTTCGGATATTTAGAAATTTATAACATGAATATATGAGAAACCCGGTAATAATCTGAAGATTCAATGAATCTGAACTGTGATTATATTTTAAATCTTTCTGAAATAATGGAAATTCAAAAATCC</canonical>
            <polymorphic>GAGGTTTTTATATTCTTGGAAGTTTCAAAATTCTCAAATTTTTAGACTTGGAAGTTCAAAAACTAAAAATTTTGAATTCTGAAAATCTGGAACTTCAGGATTCTGAGTATCTGGAAATTCTAAAATTCTGAAATTCTGAAATGATGGAATTTCCAAACTAAAAAGATTTCACAATTCCCTGAAGAGAGCGAAAAGTCTCATCTTTTTTTCAATTGTTTTGCTCCATTTCCCCCTTATCATTGATAAATTGATAAAATTTGAAAAATTCTGACTCATCAATTTTTCCCTATTTTTTCTAATTCTCTCTGTTCTCTCTTAACGATCAATTTGTCCTTCTTTTTTTCGCTTTTTTCATTTTCTCAAAAGCCTTTCGTACTCCCTTTTTTCCTTGTTCTTTATGACCCATTCTCTTTTTTCTTCTTCTTTTCTTTGACCCTTATCATTTTTCATTCGGTTCACAGTTTTAGCTGATTAATGGTTTGTCCTACAAACATTTCAARAAAGCCAAAAATTCAGAAAATATAGAAATTCAGAAGTTCCGAATTTTTGAAATTCAGAATCTCAAATATCTGAATTTCAGTAATTTGGAGTTCCAAAATACTTCTGAAAAGTCTAAGAAATCTAGAAATTTCAAAATTTCAAAACATTATTATATTTTTTTTGAAATTTTTCAAAAAACGGAGCTTCCGGTGGTGTAAAAATAGGATTTTTATCATTGTTTCTTATCTAGTCTTCTACCTTTTTTCCCCCATTAAATCGAGAATAAATAAACAGAGAAAATGAGAGAAAGAAGAAGAAAAAAATGCATAAATATAAATCATCTGGTTTATGTGACTAATTTATTGGCTTCTTTCGTTTTTCTTCAGATTTTCGGATTTTCGGATATTTAGAAATTTATAACATGAATATATGAGAAACCCGGTAATAATCTGAAGATTCAATGAATCTGAACTGTGATTATATTTTAAATCTTTCTGAAATAATGGAAATTCAAAAATCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>386 242 136 125 87 15 9</canonical_bands>
                <polymorphic_bands>511 242 136 87 15 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTATCATTTTTCATTCGGTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAGAAGTATTTTGGAACTC</pcr_primer_p2>
		<pcr_amplicon_size>175</pcr_amplicon_size>
		<canonical_amplicon>CTTATCATTTTTCATTCGGTTCACAGTTTTAGCTGATTAATGGTTTGTCCTACAAACATTTCAAGAAAGCCAAAAATTCAGAAAATATAGAAATTCAGAAGTTCCGAATTTTTGAAATTCAGAATCTCAAATATCTGAATTTCAGTAATTTGGAGTTCCAAAATACTTCTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>CTTATCATTTTTCATTCGGTTCACAGTTTTAGCTGATTAATGGTTTGTCCTACAAACATTTCAARAAAGCCAAAAATTCAGAAAATATAGAAATTCAGAAGTTCCGAATTTTTGAAATTCAGAATCTCAAATATCTGAATTTCAGTAATTTGGAGTTCCAAAATACTTCTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30327</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>110345</contig_pos>
        <strand>-</strand>
        <context>ACTTTTAAAA[A/T]TTATATGATA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATAGTTACTAAAACGTGAGGAAAAATCTTTAAAAAACAAACTTTTAAAA</left_flank>
        <right_flank>TTATATGATAAAAAGGATACGTAGAAACACACAGTACTTGGTGCCACATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAATGCATAAATATAAATCATCTGGTTTATGTGACTAATTTATTGGCTTCTTTCGTTTTTCTTCAGATTTTCGGATTTTCGGATATTTAGAAATTTATAACATGAATATATGAGAAACCCGGTAATAATCTGAAGATTCAATGAATCTGAACTGTGATTATATTTTAAATCTTTCTGAAATAATGGAAATTCAAAAATCCGGAAAGCCGGAACTCTCCTGAAACTCAAGAAAAATCGATAGGAAAATGTGAGATTACTTTGGGTCAATGTATCTTGGTTACTGTAAAAGATACCAAAAACCTTTTAAGACCAAAAATGTTTGATTTAAAATCAGCAACATTTCATTAGTTGACAATTTTTAGATAACTAAAATAGGAAACGAGATAATTAGGGTCAAAGAGAGGATCTTTTTAAGGAGTCTCGCAGATTTCAAAAGTGAAAATACAATAGTTACTAAAACGTGAGGAAAAATCTTTAAAAAACAAACTTTTAAAATTTATATGATAAAAAGGATACGTAGAAACACACAGTACTTGGTGCCACATTGACCTCTCGAAGAATACTATAAAGGAAGAGAGAATTGGAAGTACAAATCAGTTCTTGCCTTCTCCGGACTCCAGAATAGGGACCCGGGGAAGGCTCCGGGAATCCAGGAATCCGGAATTCCGATGATCCGGGAATCCGGACATCCGGAAATCCGGTGATCCGGGATTCCGGGATTCCGGTGATCCCGAAATCCGGGATTCCGGGATTCCGGTGATCCGGAAATCCGGTGATCCGGTGATCCGGTAATCCCCGGTTATTCGGTGATCCAGGAATCCGGACATCCGGGGATCGGATGTACGGATTTCTGGATTTCCGGATGTCCGGATTTCCGGATTCCCGGATGTCCGGATTTCCGGATCACCGGAATCCCGGATCACCGGATTTCCGGAATCCCGGATCACCGGATTTCAGGATTCCCGAAATCCCGGATCTCCGAATGCCGGATTTCCG</canonical>
            <polymorphic>AAAAAAATGCATAAATATAAATCATCTGGTTTATGTGACTAATTTATTGGCTTCTTTCGTTTTTCTTCAGATTTTCGGATTTTCGGATATTTAGAAATTTATAACATGAATATATGAGAAACCCGGTAATAATCTGAAGATTCAATGAATCTGAACTGTGATTATATTTTAAATCTTTCTGAAATAATGGAAATTCAAAAATCCGGAAAGCCGGAACTCTCCTGAAACTCAAGAAAAATCGATAGGAAAATGTGAGATTACTTTGGGTCAATGTATCTTGGTTACTGTAAAAGATACCAAAAACCTTTTAAGACCAAAAATGTTTGATTTAAAATCAGCAACATTTCATTAGTTGACAATTTTTAGATAACTAAAATAGGAAACGAGATAATTAGGGTCAAAGAGAGGATCTTTTTAAGGAGTCTCGCAGATTTCAAAAGTGAAAATACAATAGTTACTAAAACGTGAGGAAAAATCTTTAAAAAACAAACTTTTAAAAWTTATATGATAAAAAGGATACGTAGAAACACACAGTACTTGGTGCCACATTGACCTCTCGAAGAATACTATAAAGGAAGAGAGAATTGGAAGTACAAATCAGTTCTTGCCTTCTCCGGACTCCAGAATAGGGACCCGGGGAAGGCTCCGGGAATCCAGGAATCCGGAATTCCGATGATCCGGGAATCCGGACATCCGGAAATCCGGTGATCCGGGATTCCGGGATTCCGGTGATCCCGAAATCCGGGATTCCGGGATTCCGGTGATCCGGAAATCCGGTGATCCGGTGATCCGGTAATCCCCGGTTATTCGGTGATCCAGGAATCCGGACATCCGGGGATCGGATGTACGGATTTCTGGATTTCCGGATGTCCGGATTTCCGGATTCCCGGATGTCCGGATTTCCGGATCACCGGAATCCCGGATCACCGGATTTCCGGAATCCCGGATCACCGGATTTCAGGATTCCCGAAATCCCGGATCTCCGAATGCCGGATTTCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>335 306 168 96 95</canonical_bands>
                <polymorphic_bands>474 335 96 95</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>335 166 108 96 85 83 55 40 32</canonical_bands>
                <polymorphic_bands>335 193 166 96 83 55 40 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCGATAGGAAAATGTGAGAT</pcr_primer_p1>
		<pcr_primer_p2>TAGTATTCTTCGAGAGGTCAATG</pcr_primer_p2>
		<pcr_amplicon_size>334</pcr_amplicon_size>
		<canonical_amplicon>AAATCGATAGGAAAATGTGAGATTACTTTGGGTCAATGTATCTTGGTTACTGTAAAAGATACCAAAAACCTTTTAAGACCAAAAATGTTTGATTTAAAATCAGCAACATTTCATTAGTTGACAATTTTTAGATAACTAAAATAGGAAACGAGATAATTAGGGTCAAAGAGAGGATCTTTTTAAGGAGTCTCGCAGATTTCAAAAGTGAAAATACAATAGTTACTAAAACGTGAGGAAAAATCTTTAAAAAACAAACTTTTAAAATTTATATGATAAAAAGGATACGTAGAAACACACAGTACTTGGTGCCACATTGACCTCTCGAAGAATACTA</canonical_amplicon>
		<polymorphic_amplicon>AAATCGATAGGAAAATGTGAGATTACTTTGGGTCAATGTATCTTGGTTACTGTAAAAGATACCAAAAACCTTTTAAGACCAAAAATGTTTGATTTAAAATCAGCAACATTTCATTAGTTGACAATTTTTAGATAACTAAAATAGGAAACGAGATAATTAGGGTCAAAGAGAGGATCTTTTTAAGGAGTCTCGCAGATTTCAAAAGTGAAAATACAATAGTTACTAAAACGTGAGGAAAAATCTTTAAAAAACAAACTTTTAAAAWTTATATGATAAAAAGGATACGTAGAAACACACAGTACTTGGTGCCACATTGACCTCTCGAAGAATACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30328</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>110951</contig_pos>
        <strand>+</strand>
        <context>AGTATTATTC[C/G]AGAGGTCATA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCGAGAACTGATTTGTCCTTCCAATTCTCTCTTCCTTTATAGTATTATTC</left_flank>
        <right_flank>AGAGGTCATAGGACACCAAGGGCCGTGTGTTTCTACGTATCTTTTTTATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCTTCTCCGGACTCCAGAATAGGGACCCGGGGAAGGCTCCGGGAATCCAGGAATCCGGAATTCCGATGATCCGGGAATCCGGACATCCGGAAATCCGGTGATCCGGGATTCCGGGATTCCGGTGATCCCGAAATCCGGGATTCCGGGATTCCGGTGATCCGGAAATCCGGTGATCCGGTGATCCGGTAATCCCCGGTTATTCGGTGATCCAGGAATCCGGACATCCGGGGATCGGATGTACGGATTTCTGGATTTCCGGATGTCCGGATTTCCGGATTCCCGGATGTCCGGATTTCCGGATCACCGGAATCCCGGATCACCGGATTTCCGGAATCCCGGATCACCGGATTTCAGGATTCCCGAAATCCCGGATCTCCGAATGCCGGATTTCCGGATTCCTGGATGTCCGGGGCCCTCTCCCGTGCCCCTATTCTGGAGCCCGGAGAAAGCGAGAACTGATTTGTCCTTCCAATTCTCTCTTCCTTTATAGTATTATTCAAGAGGTCATAGGACACCAAGGGCCGTGTGTTTCTACGTATCTTTTTTATGATATAATTTTTTAAAGTTTGTTTTTTGAAGATTTTTCCTCACGTTTTAATAACTATCGAATTTTCACTTTTGAAATCTGCGAGACTCCTTAAAAAGATCCTCCCTTTGACCCTAATTAACTCCTATTAGAAATATCTAAAAATTGTCGACTAATGAAATGTTTCTGATATCAAGACAATAATTTCTGCACTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGTATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGACGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGAGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATG</canonical>
            <polymorphic>GCCTTCTCCGGACTCCAGAATAGGGACCCGGGGAAGGCTCCGGGAATCCAGGAATCCGGAATTCCGATGATCCGGGAATCCGGACATCCGGAAATCCGGTGATCCGGGATTCCGGGATTCCGGTGATCCCGAAATCCGGGATTCCGGGATTCCGGTGATCCGGAAATCCGGTGATCCGGTGATCCGGTAATCCCCGGTTATTCGGTGATCCAGGAATCCGGACATCCGGGGATCGGATGTACGGATTTCTGGATTTCCGGATGTCCGGATTTCCGGATTCCCGGATGTCCGGATTTCCGGATCACCGGAATCCCGGATCACCGGATTTCCGGAATCCCGGATCACCGGATTTCAGGATTCCCGAAATCCCGGATCTCCGAATGCCGGATTTCCGGATTCCTGGATGTCCGGGGCCCTCTCCCGTGCCCCTATTCTGGAGCCCGGAGAAAGCGAGAACTGATTTGTCCTTCCAATTCTCTCTTCCTTTATAGTATTATTCSAGAGGTCATAGGACACCAAGGGCCGTGTGTTTCTACGTATCTTTTTTATGATATAATTTTTTAAAGTTTGTTTTTTGAAGATTTTTCCTCACGTTTTAATAACTATCGAATTTTCACTTTTGAAATCTGCGAGACTCCTTAAAAAGATCCTCCCTTTGACCCTAATTAACTCCTATTAGAAATATCTAAAAATTGTCGACTAATGAAATGTTTCTGATATCAAGACAATAATTTCTGCACTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGTATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGACGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGAGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGCGAGAACTGATTTGT</pcr_primer_p1>
		<pcr_primer_p2>AAAAACTACGAAAAATCTCCTGT</pcr_primer_p2>
		<pcr_amplicon_size>332</pcr_amplicon_size>
		<canonical_amplicon>GAAAGCGAGAACTGATTTGTCCTTCCAATTCTCTCTTCCTTTATAGTATTATTCAAGAGGTCATAGGACACCAAGGGCCGTGTGTTTCTACGTATCTTTTTTATGATATAATTTTTTAAAGTTTGTTTTTTGAAGATTTTTCCTCACGTTTTAATAACTATCGAATTTTCACTTTTGAAATCTGCGAGACTCCTTAAAAAGATCCTCCCTTTGACCCTAATTAACTCCTATTAGAAATATCTAAAAATTGTCGACTAATGAAATGTTTCTGATATCAAGACAATAATTTCTGCACTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAAAGCGAGAACTGATTTGTCCTTCCAATTCTCTCTTCCTTTATAGTATTATTCSAGAGGTCATAGGACACCAAGGGCCGTGTGTTTCTACGTATCTTTTTTATGATATAATTTTTTAAAGTTTGTTTTTTGAAGATTTTTCCTCACGTTTTAATAACTATCGAATTTTCACTTTTGAAATCTGCGAGACTCCTTAAAAAGATCCTCCCTTTGACCCTAATTAACTCCTATTAGAAATATCTAAAAATTGTCGACTAATGAAATGTTTCTGATATCAAGACAATAATTTCTGCACTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30329</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>110962</contig_pos>
        <strand>+</strand>
        <context>AGAGGTCATA[A/G]GACACCAAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGTCCTTCCAATTCTCTCTTCCTTTATAGTATTATTCAAGAGGTCATA</left_flank>
        <right_flank>GACACCAAGGGCCGTGTGTTTCTACGTATCTTTTTTATGATATAATTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCCAGAATAGGGACCCGGGGAAGGCTCCGGGAATCCAGGAATCCGGAATTCCGATGATCCGGGAATCCGGACATCCGGAAATCCGGTGATCCGGGATTCCGGGATTCCGGTGATCCCGAAATCCGGGATTCCGGGATTCCGGTGATCCGGAAATCCGGTGATCCGGTGATCCGGTAATCCCCGGTTATTCGGTGATCCAGGAATCCGGACATCCGGGGATCGGATGTACGGATTTCTGGATTTCCGGATGTCCGGATTTCCGGATTCCCGGATGTCCGGATTTCCGGATCACCGGAATCCCGGATCACCGGATTTCCGGAATCCCGGATCACCGGATTTCAGGATTCCCGAAATCCCGGATCTCCGAATGCCGGATTTCCGGATTCCTGGATGTCCGGGGCCCTCTCCCGTGCCCCTATTCTGGAGCCCGGAGAAAGCGAGAACTGATTTGTCCTTCCAATTCTCTCTTCCTTTATAGTATTATTCAAGAGGTCATAGGACACCAAGGGCCGTGTGTTTCTACGTATCTTTTTTATGATATAATTTTTTAAAGTTTGTTTTTTGAAGATTTTTCCTCACGTTTTAATAACTATCGAATTTTCACTTTTGAAATCTGCGAGACTCCTTAAAAAGATCCTCCCTTTGACCCTAATTAACTCCTATTAGAAATATCTAAAAATTGTCGACTAATGAAATGTTTCTGATATCAAGACAATAATTTCTGCACTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGTATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGACGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGAGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCT</canonical>
            <polymorphic>ACTCCAGAATAGGGACCCGGGGAAGGCTCCGGGAATCCAGGAATCCGGAATTCCGATGATCCGGGAATCCGGACATCCGGAAATCCGGTGATCCGGGATTCCGGGATTCCGGTGATCCCGAAATCCGGGATTCCGGGATTCCGGTGATCCGGAAATCCGGTGATCCGGTGATCCGGTAATCCCCGGTTATTCGGTGATCCAGGAATCCGGACATCCGGGGATCGGATGTACGGATTTCTGGATTTCCGGATGTCCGGATTTCCGGATTCCCGGATGTCCGGATTTCCGGATCACCGGAATCCCGGATCACCGGATTTCCGGAATCCCGGATCACCGGATTTCAGGATTCCCGAAATCCCGGATCTCCGAATGCCGGATTTCCGGATTCCTGGATGTCCGGGGCCCTCTCCCGTGCCCCTATTCTGGAGCCCGGAGAAAGCGAGAACTGATTTGTCCTTCCAATTCTCTCTTCCTTTATAGTATTATTCAAGAGGTCATARGACACCAAGGGCCGTGTGTTTCTACGTATCTTTTTTATGATATAATTTTTTAAAGTTTGTTTTTTGAAGATTTTTCCTCACGTTTTAATAACTATCGAATTTTCACTTTTGAAATCTGCGAGACTCCTTAAAAAGATCCTCCCTTTGACCCTAATTAACTCCTATTAGAAATATCTAAAAATTGTCGACTAATGAAATGTTTCTGATATCAAGACAATAATTTCTGCACTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGTATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGACGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGAGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTCCTTCCAATTCTCTCT</pcr_primer_p1>
		<pcr_primer_p2>AAAACTACGAAAAATCTCCTGTC</pcr_primer_p2>
		<pcr_amplicon_size>316</pcr_amplicon_size>
		<canonical_amplicon>TTTGTCCTTCCAATTCTCTCTTCCTTTATAGTATTATTCAAGAGGTCATAGGACACCAAGGGCCGTGTGTTTCTACGTATCTTTTTTATGATATAATTTTTTAAAGTTTGTTTTTTGAAGATTTTTCCTCACGTTTTAATAACTATCGAATTTTCACTTTTGAAATCTGCGAGACTCCTTAAAAAGATCCTCCCTTTGACCCTAATTAACTCCTATTAGAAATATCTAAAAATTGTCGACTAATGAAATGTTTCTGATATCAAGACAATAATTTCTGCACTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTGTCCTTCCAATTCTCTCTTCCTTTATAGTATTATTCAAGAGGTCATARGACACCAAGGGCCGTGTGTTTCTACGTATCTTTTTTATGATATAATTTTTTAAAGTTTGTTTTTTGAAGATTTTTCCTCACGTTTTAATAACTATCGAATTTTCACTTTTGAAATCTGCGAGACTCCTTAAAAAGATCCTCCCTTTGACCCTAATTAACTCCTATTAGAAATATCTAAAAATTGTCGACTAATGAAATGTTTCTGATATCAAGACAATAATTTCTGCACTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30330</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>111013</contig_pos>
        <strand>+</strand>
        <context>TATAATTTTT[A/T]AAAGTTTGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACACCAAGGGCCGTGTGTTTCTACGTATCTTTTTTATGATATAATTTTT</left_flank>
        <right_flank>AAAGTTTGTTTTTTGAAGATTTTTCCTCACGTTTTAATAACTATCGAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCGATGATCCGGGAATCCGGACATCCGGAAATCCGGTGATCCGGGATTCCGGGATTCCGGTGATCCCGAAATCCGGGATTCCGGGATTCCGGTGATCCGGAAATCCGGTGATCCGGTGATCCGGTAATCCCCGGTTATTCGGTGATCCAGGAATCCGGACATCCGGGGATCGGATGTACGGATTTCTGGATTTCCGGATGTCCGGATTTCCGGATTCCCGGATGTCCGGATTTCCGGATCACCGGAATCCCGGATCACCGGATTTCCGGAATCCCGGATCACCGGATTTCAGGATTCCCGAAATCCCGGATCTCCGAATGCCGGATTTCCGGATTCCTGGATGTCCGGGGCCCTCTCCCGTGCCCCTATTCTGGAGCCCGGAGAAAGCGAGAACTGATTTGTCCTTCCAATTCTCTCTTCCTTTATAGTATTATTCAAGAGGTCATAGGACACCAAGGGCCGTGTGTTTCTACGTATCTTTTTTATGATATAATTTTTTAAAGTTTGTTTTTTGAAGATTTTTCCTCACGTTTTAATAACTATCGAATTTTCACTTTTGAAATCTGCGAGACTCCTTAAAAAGATCCTCCCTTTGACCCTAATTAACTCCTATTAGAAATATCTAAAAATTGTCGACTAATGAAATGTTTCTGATATCAAGACAATAATTTCTGCACTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGTATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGACGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGAGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAAGTTTTTTTGATTTTTTTTACAAGAACAAAGATACGCTCAAAGACT</canonical>
            <polymorphic>TCCGATGATCCGGGAATCCGGACATCCGGAAATCCGGTGATCCGGGATTCCGGGATTCCGGTGATCCCGAAATCCGGGATTCCGGGATTCCGGTGATCCGGAAATCCGGTGATCCGGTGATCCGGTAATCCCCGGTTATTCGGTGATCCAGGAATCCGGACATCCGGGGATCGGATGTACGGATTTCTGGATTTCCGGATGTCCGGATTTCCGGATTCCCGGATGTCCGGATTTCCGGATCACCGGAATCCCGGATCACCGGATTTCCGGAATCCCGGATCACCGGATTTCAGGATTCCCGAAATCCCGGATCTCCGAATGCCGGATTTCCGGATTCCTGGATGTCCGGGGCCCTCTCCCGTGCCCCTATTCTGGAGCCCGGAGAAAGCGAGAACTGATTTGTCCTTCCAATTCTCTCTTCCTTTATAGTATTATTCAAGAGGTCATAGGACACCAAGGGCCGTGTGTTTCTACGTATCTTTTTTATGATATAATTTTTWAAAGTTTGTTTTTTGAAGATTTTTCCTCACGTTTTAATAACTATCGAATTTTCACTTTTGAAATCTGCGAGACTCCTTAAAAAGATCCTCCCTTTGACCCTAATTAACTCCTATTAGAAATATCTAAAAATTGTCGACTAATGAAATGTTTCTGATATCAAGACAATAATTTCTGCACTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGTATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGACGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGAGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAAGTTTTTTTGATTTTTTTTACAAGAACAAAGATACGCTCAAAGACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 451 49</canonical_bands>
                <polymorphic_bands>951 49</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>499 192 79 75 50 43 35 27</canonical_bands>
                <polymorphic_bands>534 192 79 75 50 43 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCCAATTCTCTCTTCCTTTAT</pcr_primer_p1>
		<pcr_primer_p2>AAAACTACGAAAAATCTCCTGTC</pcr_primer_p2>
		<pcr_amplicon_size>310</pcr_amplicon_size>
		<canonical_amplicon>CTTCCAATTCTCTCTTCCTTTATAGTATTATTCAAGAGGTCATAGGACACCAAGGGCCGTGTGTTTCTACGTATCTTTTTTATGATATAATTTTTTAAAGTTTGTTTTTTGAAGATTTTTCCTCACGTTTTAATAACTATCGAATTTTCACTTTTGAAATCTGCGAGACTCCTTAAAAAGATCCTCCCTTTGACCCTAATTAACTCCTATTAGAAATATCTAAAAATTGTCGACTAATGAAATGTTTCTGATATCAAGACAATAATTTCTGCACTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>CTTCCAATTCTCTCTTCCTTTATAGTATTATTCAAGAGGTCATAGGACACCAAGGGCCGTGTGTTTCTACGTATCTTTTTTATGATATAATTTTTWAAAGTTTGTTTTTTGAAGATTTTTCCTCACGTTTTAATAACTATCGAATTTTCACTTTTGAAATCTGCGAGACTCCTTAAAAAGATCCTCCCTTTGACCCTAATTAACTCCTATTAGAAATATCTAAAAATTGTCGACTAATGAAATGTTTCTGATATCAAGACAATAATTTCTGCACTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30331</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>112990</contig_pos>
        <strand></strand>
        <context>ttttgaaaga[G/T]atctaaaagt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCACCCGGACCGTTTACTCTGAGTCTATATATCTCAATTCTTTTGAAAGA</left_flank>
        <right_flank>ATCTAAAAGTTGTCAACTAATAAAATGTTTATCATGATATCAGCAACATT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTAAAATTCTCAGTTGCCTTTCTTTTTTCCAAAATACAGTTACCTCTCTTCCTCTAATAAATAAATAAATCCCTTTTCCCTTCTTCAGGTGTGGTCTTGTTTGTCACTCTGTAAGTGCCAACTACCGTTTTTCAAGTGTTGTTTCCTTTTTTTCTTTTCCCTCTCTTCTCAATTTGATTCTCTAGATTTTTGTCCATTTATAGTGTATTTTTCAAATTGTTGTCTTTTTTCACACCCAATTTTTTTTTATTTGGATAGGTGCTCGATTCGCTTGAATGGTTTTGGTTTTTTTTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACAATCAATAGTTCTTACTAAAAATAATTGCAGATCGAAGGTTCTAGAAGCTTGAATATTCGACAATCTGGATCTTCTTGTTACAACACAAGTTCATACACCGGAACGCCACCCGGACCGTTTACTCTGAGTCTATATATCTCAATTCTTTTGAAAGAGATCTAAAAGTTGTCAACTAATAAAATGTTTATCATGATATCAGCAACATTTTATTAGTTTACCAATTTTCAATATCTTCCACAGGAATCGAGATAATCGACCTCAAAGTTGATGATTCGTGTCTATTAGAGTGTTTACGGTGTTCTAACTATTCATGTACTTTAAGCTCAGTTATCTCGATTTACGGAAGTGATATCAAAAATTTGTTAACTCATAAAATGTTTATCATCAAATTATCAACATTTGATCAGCTGACAGCTTTTTGATATCTATTACAGTATTCGAGATAATTGAGCTCTAAGTGCAAAAAAAAAACGATATATTGATTACCTAGTGAAGGTTGAAGTTCTGAAAGTTTTTCTCATTTTTCAAAAAAAAAGAGAGAATTGACAGCTATCGGATTTCTCTGTGTGACAGTTAAAAGGGGACATCAATTTCGCGAAAAAAAAGTGCAAAGCCATTATTTTTGATGTTCACTCTTCTCTCTTTTTCATCCGCAA</canonical>
            <polymorphic>TTCTAAAATTCTCAGTTGCCTTTCTTTTTTCCAAAATACAGTTACCTCTCTTCCTCTAATAAATAAATAAATCCCTTTTCCCTTCTTCAGGTGTGGTCTTGTTTGTCACTCTGTAAGTGCCAACTACCGTTTTTCAAGTGTTGTTTCCTTTTTTTCTTTTCCCTCTCTTCTCAATTTGATTCTCTAGATTTTTGTCCATTTATAGTGTATTTTTCAAATTGTTGTCTTTTTTCACACCCAATTTTTTTTTATTTGGATAGGTGCTCGATTCGCTTGAATGGTTTTGGTTTTTTTTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACAATCAATAGTTCTTACTAAAAATAATTGCAGATCGAAGGTTCTAGAAGCTTGAATATTCGACAATCTGGATCTTCTTGTTACAACACAAGTTCATACACCGGAACGCCACCCGGACCGTTTACTCTGAGTCTATATATCTCAATTCTTTTGAAAGAKATCTAAAAGTTGTCAACTAATAAAATGTTTATCATGATATCAGCAACATTTTATTAGTTTACCAATTTTCAATATCTTCCACAGGAATCGAGATAATCGACCTCAAAGTTGATGATTCGTGTCTATTAGAGTGTTTACGGTGTTCTAACTATTCATGTACTTTAAGCTCAGTTATCTCGATTTACGGAAGTGATATCAAAAATTTGTTAACTCATAAAATGTTTATCATCAAATTATCAACATTTGATCAGCTGACAGCTTTTTGATATCTATTACAGTATTCGAGATAATTGAGCTCTAAGTGCAAAAAAAAAACGATATATTGATTACCTAGTGAAGGTTGAAGTTCTGAAAGTTTTTCTCATTTTTCAAAAAAAAAGAGAGAATTGACAGCTATCGGATTTCTCTGTGTGACAGTTAAAAGGGGACATCAATTTCGCGAAAAAAAAGTGCAAAGCCATTATTTTTGATGTTCACTCTTCTCTCTTTTTCATCCGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>373 255 246 88 38</canonical_bands>
                <polymorphic_bands>373 334 255 38</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>501 411 88</canonical_bands>
                <polymorphic_bands>589 411</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTTACAACACAAGTTCATACAC</pcr_primer_p1>
		<pcr_primer_p2>TCAACCTTCACTAGGTAATCAAT</pcr_primer_p2>
		<pcr_amplicon_size>426</pcr_amplicon_size>
		<canonical_amplicon>TTGTTACAACACAAGTTCATACACCGGAACGCCACCCGGACCGTTTACTCTGAGTCTATATATCTCAATTCTTTTGAAAGAGATCTAAAAGTTGTCAACTAATAAAATGTTTATCATGATATCAGCAACATTTTATTAGTTTACCAATTTTCAATATCTTCCACAGGAATCGAGATAATCGACCTCAAAGTTGATGATTCGTGTCTATTAGAGTGTTTACGGTGTTCTAACTATTCATGTACTTTAAGCTCAGTTATCTCGATTTACGGAAGTGATATCAAAAATTTGTTAACTCATAAAATGTTTATCATCAAATTATCAACATTTGATCAGCTGACAGCTTTTTGATATCTATTACAGTATTCGAGATAATTGAGCTCTAAGTGCAAAAAAAAAACGATATATTGATTACCTAGTGAAGGTTGA</canonical_amplicon>
		<polymorphic_amplicon>TTGTTACAACACAAGTTCATACACCGGAACGCCACCCGGACCGTTTACTCTGAGTCTATATATCTCAATTCTTTTGAAAGAKATCTAAAAGTTGTCAACTAATAAAATGTTTATCATGATATCAGCAACATTTTATTAGTTTACCAATTTTCAATATCTTCCACAGGAATCGAGATAATCGACCTCAAAGTTGATGATTCGTGTCTATTAGAGTGTTTACGGTGTTCTAACTATTCATGTACTTTAAGCTCAGTTATCTCGATTTACGGAAGTGATATCAAAAATTTGTTAACTCATAAAATGTTTATCATCAAATTATCAACATTTGATCAGCTGACAGCTTTTTGATATCTATTACAGTATTCGAGATAATTGAGCTCTAAGTGCAAAAAAAAAACGATATATTGATTACCTAGTGAAGGTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30332</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>113174</contig_pos>
        <strand></strand>
        <context>atctcgattt[A/C]cggaagtgat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTACGGTGTTCTAACTATTCATGTACTTTAAGCTCAGTTATCTCGATTT</left_flank>
        <right_flank>CGGAAGTGATATCAAAAATTTGTTAACTCATAAAATGTTTATCATCAAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGATTTTTGTCCATTTATAGTGTATTTTTCAAATTGTTGTCTTTTTTCACACCCAATTTTTTTTTATTTGGATAGGTGCTCGATTCGCTTGAATGGTTTTGGTTTTTTTTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACAATCAATAGTTCTTACTAAAAATAATTGCAGATCGAAGGTTCTAGAAGCTTGAATATTCGACAATCTGGATCTTCTTGTTACAACACAAGTTCATACACCGGAACGCCACCCGGACCGTTTACTCTGAGTCTATATATCTCAATTCTTTTGAAAGAGATCTAAAAGTTGTCAACTAATAAAATGTTTATCATGATATCAGCAACATTTTATTAGTTTACCAATTTTCAATATCTTCCACAGGAATCGAGATAATCGACCTCAAAGTTGATGATTCGTGTCTATTAGAGTGTTTACGGTGTTCTAACTATTCATGTACTTTAAGCTCAGTTATCTCGATTTACGGAAGTGATATCAAAAATTTGTTAACTCATAAAATGTTTATCATCAAATTATCAACATTTGATCAGCTGACAGCTTTTTGATATCTATTACAGTATTCGAGATAATTGAGCTCTAAGTGCAAAAAAAAAACGATATATTGATTACCTAGTGAAGGTTGAAGTTCTGAAAGTTTTTCTCATTTTTCAAAAAAAAAGAGAGAATTGACAGCTATCGGATTTCTCTGTGTGACAGTTAAAAGGGGACATCAATTTCGCGAAAAAAAAGTGCAAAGCCATTATTTTTGATGTTCACTCTTCTCTCTTTTTCATCCGCAAAACTGACAACTGACAACTTTTTTTCTAGGGTTTTTAGTGGTCATTTCAGAGGAAAATTGGGAGATTTTGGAGTTCAAGAGGGTCTTAGGAAGGTTGAGTTCTTATTTGGAAACGATAGAAATTGAAAAAATCATTCAATTTTGTTTTTTTTAATTAACGGGAAGTCGTAATTTCCGAAAAATTG</canonical>
            <polymorphic>TAGATTTTTGTCCATTTATAGTGTATTTTTCAAATTGTTGTCTTTTTTCACACCCAATTTTTTTTTATTTGGATAGGTGCTCGATTCGCTTGAATGGTTTTGGTTTTTTTTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACAATCAATAGTTCTTACTAAAAATAATTGCAGATCGAAGGTTCTAGAAGCTTGAATATTCGACAATCTGGATCTTCTTGTTACAACACAAGTTCATACACCGGAACGCCACCCGGACCGTTTACTCTGAGTCTATATATCTCAATTCTTTTGAAAGAGATCTAAAAGTTGTCAACTAATAAAATGTTTATCATGATATCAGCAACATTTTATTAGTTTACCAATTTTCAATATCTTCCACAGGAATCGAGATAATCGACCTCAAAGTTGATGATTCGTGTCTATTAGAGTGTTTACGGTGTTCTAACTATTCATGTACTTTAAGCTCAGTTATCTCGATTTMCGGAAGTGATATCAAAAATTTGTTAACTCATAAAATGTTTATCATCAAATTATCAACATTTGATCAGCTGACAGCTTTTTGATATCTATTACAGTATTCGAGATAATTGAGCTCTAAGTGCAAAAAAAAAACGATATATTGATTACCTAGTGAAGGTTGAAGTTCTGAAAGTTTTTCTCATTTTTCAAAAAAAAAGAGAGAATTGACAGCTATCGGATTTCTCTGTGTGACAGTTAAAAGGGGACATCAATTTCGCGAAAAAAAAGTGCAAAGCCATTATTTTTGATGTTCACTCTTCTCTCTTTTTCATCCGCAAAACTGACAACTGACAACTTTTTTTCTAGGGTTTTTAGTGGTCATTTCAGAGGAAAATTGGGAGATTTTGGAGTTCAAGAGGGTCTTAGGAAGGTTGAGTTCTTATTTGGAAACGATAGAAATTGAAAAAATCATTCAATTTTGTTTTTTTTAATTAACGGGAAGTCGTAATTTCCGAAAAATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTTACAACACAAGTTCATACAC</pcr_primer_p1>
		<pcr_primer_p2>TCAACCTTCACTAGGTAATCAAT</pcr_primer_p2>
		<pcr_amplicon_size>426</pcr_amplicon_size>
		<canonical_amplicon>TTGTTACAACACAAGTTCATACACCGGAACGCCACCCGGACCGTTTACTCTGAGTCTATATATCTCAATTCTTTTGAAAGAGATCTAAAAGTTGTCAACTAATAAAATGTTTATCATGATATCAGCAACATTTTATTAGTTTACCAATTTTCAATATCTTCCACAGGAATCGAGATAATCGACCTCAAAGTTGATGATTCGTGTCTATTAGAGTGTTTACGGTGTTCTAACTATTCATGTACTTTAAGCTCAGTTATCTCGATTTACGGAAGTGATATCAAAAATTTGTTAACTCATAAAATGTTTATCATCAAATTATCAACATTTGATCAGCTGACAGCTTTTTGATATCTATTACAGTATTCGAGATAATTGAGCTCTAAGTGCAAAAAAAAAACGATATATTGATTACCTAGTGAAGGTTGA</canonical_amplicon>
		<polymorphic_amplicon>TTGTTACAACACAAGTTCATACACCGGAACGCCACCCGGACCGTTTACTCTGAGTCTATATATCTCAATTCTTTTGAAAGAGATCTAAAAGTTGTCAACTAATAAAATGTTTATCATGATATCAGCAACATTTTATTAGTTTACCAATTTTCAATATCTTCCACAGGAATCGAGATAATCGACCTCAAAGTTGATGATTCGTGTCTATTAGAGTGTTTACGGTGTTCTAACTATTCATGTACTTTAAGCTCAGTTATCTCGATTTMCGGAAGTGATATCAAAAATTTGTTAACTCATAAAATGTTTATCATCAAATTATCAACATTTGATCAGCTGACAGCTTTTTGATATCTATTACAGTATTCGAGATAATTGAGCTCTAAGTGCAAAAAAAAAACGATATATTGATTACCTAGTGAAGGTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30333</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>113212</contig_pos>
        <strand></strand>
        <context>tcataaaatg[T/A]ttatcatcaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTATCTCGATTTACGGAAGTGATATCAAAAATTTGTTAACTCATAAAATG</left_flank>
        <right_flank>TTATCATCAAATTATCAACATTTGATCAGCTGACAGCTTTTTGATATCTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCTTTTTTCACACCCAATTTTTTTTTATTTGGATAGGTGCTCGATTCGCTTGAATGGTTTTGGTTTTTTTTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACAATCAATAGTTCTTACTAAAAATAATTGCAGATCGAAGGTTCTAGAAGCTTGAATATTCGACAATCTGGATCTTCTTGTTACAACACAAGTTCATACACCGGAACGCCACCCGGACCGTTTACTCTGAGTCTATATATCTCAATTCTTTTGAAAGAGATCTAAAAGTTGTCAACTAATAAAATGTTTATCATGATATCAGCAACATTTTATTAGTTTACCAATTTTCAATATCTTCCACAGGAATCGAGATAATCGACCTCAAAGTTGATGATTCGTGTCTATTAGAGTGTTTACGGTGTTCTAACTATTCATGTACTTTAAGCTCAGTTATCTCGATTTACGGAAGTGATATCAAAAATTTGTTAACTCATAAAATGTTTATCATCAAATTATCAACATTTGATCAGCTGACAGCTTTTTGATATCTATTACAGTATTCGAGATAATTGAGCTCTAAGTGCAAAAAAAAAACGATATATTGATTACCTAGTGAAGGTTGAAGTTCTGAAAGTTTTTCTCATTTTTCAAAAAAAAAGAGAGAATTGACAGCTATCGGATTTCTCTGTGTGACAGTTAAAAGGGGACATCAATTTCGCGAAAAAAAAGTGCAAAGCCATTATTTTTGATGTTCACTCTTCTCTCTTTTTCATCCGCAAAACTGACAACTGACAACTTTTTTTCTAGGGTTTTTAGTGGTCATTTCAGAGGAAAATTGGGAGATTTTGGAGTTCAAGAGGGTCTTAGGAAGGTTGAGTTCTTATTTGGAAACGATAGAAATTGAAAAAATCATTCAATTTTGTTTTTTTTAATTAACGGGAAGTCGTAATTTCCGAAAAATTGAAATTCGGGAACTCTCTCTTCCATCACAAGTTCACTTC</canonical>
            <polymorphic>TGTCTTTTTTCACACCCAATTTTTTTTTATTTGGATAGGTGCTCGATTCGCTTGAATGGTTTTGGTTTTTTTTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAACAATCAATAGTTCTTACTAAAAATAATTGCAGATCGAAGGTTCTAGAAGCTTGAATATTCGACAATCTGGATCTTCTTGTTACAACACAAGTTCATACACCGGAACGCCACCCGGACCGTTTACTCTGAGTCTATATATCTCAATTCTTTTGAAAGAGATCTAAAAGTTGTCAACTAATAAAATGTTTATCATGATATCAGCAACATTTTATTAGTTTACCAATTTTCAATATCTTCCACAGGAATCGAGATAATCGACCTCAAAGTTGATGATTCGTGTCTATTAGAGTGTTTACGGTGTTCTAACTATTCATGTACTTTAAGCTCAGTTATCTCGATTTACGGAAGTGATATCAAAAATTTGTTAACTCATAAAATGWTTATCATCAAATTATCAACATTTGATCAGCTGACAGCTTTTTGATATCTATTACAGTATTCGAGATAATTGAGCTCTAAGTGCAAAAAAAAAACGATATATTGATTACCTAGTGAAGGTTGAAGTTCTGAAAGTTTTTCTCATTTTTCAAAAAAAAAGAGAGAATTGACAGCTATCGGATTTCTCTGTGTGACAGTTAAAAGGGGACATCAATTTCGCGAAAAAAAAGTGCAAAGCCATTATTTTTGATGTTCACTCTTCTCTCTTTTTCATCCGCAAAACTGACAACTGACAACTTTTTTTCTAGGGTTTTTAGTGGTCATTTCAGAGGAAAATTGGGAGATTTTGGAGTTCAAGAGGGTCTTAGGAAGGTTGAGTTCTTATTTGGAAACGATAGAAATTGAAAAAATCATTCAATTTTGTTTTTTTTAATTAACGGGAAGTCGTAATTTCCGAAAAATTGAAATTCGGGAACTCTCTCTTCCATCACAAGTTCACTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTTACAACACAAGTTCATACAC</pcr_primer_p1>
		<pcr_primer_p2>TCAACCTTCACTAGGTAATCAAT</pcr_primer_p2>
		<pcr_amplicon_size>426</pcr_amplicon_size>
		<canonical_amplicon>TTGTTACAACACAAGTTCATACACCGGAACGCCACCCGGACCGTTTACTCTGAGTCTATATATCTCAATTCTTTTGAAAGAGATCTAAAAGTTGTCAACTAATAAAATGTTTATCATGATATCAGCAACATTTTATTAGTTTACCAATTTTCAATATCTTCCACAGGAATCGAGATAATCGACCTCAAAGTTGATGATTCGTGTCTATTAGAGTGTTTACGGTGTTCTAACTATTCATGTACTTTAAGCTCAGTTATCTCGATTTACGGAAGTGATATCAAAAATTTGTTAACTCATAAAATGTTTATCATCAAATTATCAACATTTGATCAGCTGACAGCTTTTTGATATCTATTACAGTATTCGAGATAATTGAGCTCTAAGTGCAAAAAAAAAACGATATATTGATTACCTAGTGAAGGTTGA</canonical_amplicon>
		<polymorphic_amplicon>TTGTTACAACACAAGTTCATACACCGGAACGCCACCCGGACCGTTTACTCTGAGTCTATATATCTCAATTCTTTTGAAAGAGATCTAAAAGTTGTCAACTAATAAAATGTTTATCATGATATCAGCAACATTTTATTAGTTTACCAATTTTCAATATCTTCCACAGGAATCGAGATAATCGACCTCAAAGTTGATGATTCGTGTCTATTAGAGTGTTTACGGTGTTCTAACTATTCATGTACTTTAAGCTCAGTTATCTCGATTTACGGAAGTGATATCAAAAATTTGTTAACTCATAAAATGWTTATCATCAAATTATCAACATTTGATCAGCTGACAGCTTTTTGATATCTATTACAGTATTCGAGATAATTGAGCTCTAAGTGCAAAAAAAAAACGATATATTGATTACCTAGTGAAGGTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30334</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>113303</contig_pos>
        <strand>+</strand>
        <context>tGCAAAAAAA[A/C]AACGATATAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGATATCTATTACAGTATTCGAGATAATTGAGCTCTAAGTGCAAAAAAA</left_flank>
        <right_flank>AACGATATATTGATTACCTAGTGAAGGTTGAAGTTCTGAAAGTTTTTCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGAGAGAGAGAGAGAGAGAGAGAGAAACAATCAATAGTTCTTACTAAAAATAATTGCAGATCGAAGGTTCTAGAAGCTTGAATATTCGACAATCTGGATCTTCTTGTTACAACACAAGTTCATACACCGGAACGCCACCCGGACCGTTTACTCTGAGTCTATATATCTCAATTCTTTTGAAAGAGATCTAAAAGTTGTCAACTAATAAAATGTTTATCATGATATCAGCAACATTTTATTAGTTTACCAATTTTCAATATCTTCCACAGGAATCGAGATAATCGACCTCAAAGTTGATGATTCGTGTCTATTAGAGTGTTTACGGTGTTCTAACTATTCATGTACTTTAAGCTCAGTTATCTCGATTTACGGAAGTGATATCAAAAATTTGTTAACTCATAAAATGTTTATCATCAAATTATCAACATTTGATCAGCTGACAGCTTTTTGATATCTATTACAGTATTCGAGATAATTGAGCTCTAAGTGCAAAAAAAAAACGATATATTGATTACCTAGTGAAGGTTGAAGTTCTGAAAGTTTTTCTCATTTTTCAAAAAAAAAGAGAGAATTGACAGCTATCGGATTTCTCTGTGTGACAGTTAAAAGGGGACATCAATTTCGCGAAAAAAAAGTGCAAAGCCATTATTTTTGATGTTCACTCTTCTCTCTTTTTCATCCGCAAAACTGACAACTGACAACTTTTTTTCTAGGGTTTTTAGTGGTCATTTCAGAGGAAAATTGGGAGATTTTGGAGTTCAAGAGGGTCTTAGGAAGGTTGAGTTCTTATTTGGAAACGATAGAAATTGAAAAAATCATTCAATTTTGTTTTTTTTAATTAACGGGAAGTCGTAATTTCCGAAAAATTGAAATTCGGGAACTCTCTCTTCCATCACAAGTTCACTTCTCTGAGCTGCTTTTTTTTTGTGAAAAAAAGTCCATCCCTTCTAAAAATAAATTTACTAAATCCAGTACTTTTAATCTCCCATGGATAATCC</canonical>
            <polymorphic>AGAGAGAGAGAGAGAGAGAGAGAGAGAAACAATCAATAGTTCTTACTAAAAATAATTGCAGATCGAAGGTTCTAGAAGCTTGAATATTCGACAATCTGGATCTTCTTGTTACAACACAAGTTCATACACCGGAACGCCACCCGGACCGTTTACTCTGAGTCTATATATCTCAATTCTTTTGAAAGAGATCTAAAAGTTGTCAACTAATAAAATGTTTATCATGATATCAGCAACATTTTATTAGTTTACCAATTTTCAATATCTTCCACAGGAATCGAGATAATCGACCTCAAAGTTGATGATTCGTGTCTATTAGAGTGTTTACGGTGTTCTAACTATTCATGTACTTTAAGCTCAGTTATCTCGATTTACGGAAGTGATATCAAAAATTTGTTAACTCATAAAATGTTTATCATCAAATTATCAACATTTGATCAGCTGACAGCTTTTTGATATCTATTACAGTATTCGAGATAATTGAGCTCTAAGTGCAAAAAAAMAACGATATATTGATTACCTAGTGAAGGTTGAAGTTCTGAAAGTTTTTCTCATTTTTCAAAAAAAAAGAGAGAATTGACAGCTATCGGATTTCTCTGTGTGACAGTTAAAAGGGGACATCAATTTCGCGAAAAAAAAGTGCAAAGCCATTATTTTTGATGTTCACTCTTCTCTCTTTTTCATCCGCAAAACTGACAACTGACAACTTTTTTTCTAGGGTTTTTAGTGGTCATTTCAGAGGAAAATTGGGAGATTTTGGAGTTCAAGAGGGTCTTAGGAAGGTTGAGTTCTTATTTGGAAACGATAGAAATTGAAAAAATCATTCAATTTTGTTTTTTTTAATTAACGGGAAGTCGTAATTTCCGAAAAATTGAAATTCGGGAACTCTCTCTTCCATCACAAGTTCACTTCTCTGAGCTGCTTTTTTTTTGTGAAAAAAAGTCCATCCCTTCTAAAAATAAATTTACTAAATCCAGTACTTTTAATCTCCCATGGATAATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTTACAACACAAGTTCATACAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATGAGAAAAACTTTCAGAACT</pcr_primer_p2>
		<pcr_amplicon_size>450</pcr_amplicon_size>
		<canonical_amplicon>TTGTTACAACACAAGTTCATACACCGGAACGCCACCCGGACCGTTTACTCTGAGTCTATATATCTCAATTCTTTTGAAAGAGATCTAAAAGTTGTCAACTAATAAAATGTTTATCATGATATCAGCAACATTTTATTAGTTTACCAATTTTCAATATCTTCCACAGGAATCGAGATAATCGACCTCAAAGTTGATGATTCGTGTCTATTAGAGTGTTTACGGTGTTCTAACTATTCATGTACTTTAAGCTCAGTTATCTCGATTTACGGAAGTGATATCAAAAATTTGTTAACTCATAAAATGTTTATCATCAAATTATCAACATTTGATCAGCTGACAGCTTTTTGATATCTATTACAGTATTCGAGATAATTGAGCTCTAAGTGCAAAAAAAAAACGATATATTGATTACCTAGTGAAGGTTGAAGTTCTGAAAGTTTTTCTCATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGTTACAACACAAGTTCATACACCGGAACGCCACCCGGACCGTTTACTCTGAGTCTATATATCTCAATTCTTTTGAAAGAGATCTAAAAGTTGTCAACTAATAAAATGTTTATCATGATATCAGCAACATTTTATTAGTTTACCAATTTTCAATATCTTCCACAGGAATCGAGATAATCGACCTCAAAGTTGATGATTCGTGTCTATTAGAGTGTTTACGGTGTTCTAACTATTCATGTACTTTAAGCTCAGTTATCTCGATTTACGGAAGTGATATCAAAAATTTGTTAACTCATAAAATGTTTATCATCAAATTATCAACATTTGATCAGCTGACAGCTTTTTGATATCTATTACAGTATTCGAGATAATTGAGCTCTAAGTGCAAAAAAAMAACGATATATTGATTACCTAGTGAAGGTTGAAGTTCTGAAAGTTTTTCTCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30335</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>113432</contig_pos>
        <strand>+</strand>
        <context>CAATTTCGCG[C/T]AAAAAAAGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCTATCGGATTTCTCTGTGTGACAGTTAAAAGGGGACATCAATTTCGCG</left_flank>
        <right_flank>AAAAAAAGTGCAAAGCCATTATTTTTGATGTTCACTCTTCTCTCTTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGAACGCCACCCGGACCGTTTACTCTGAGTCTATATATCTCAATTCTTTTGAAAGAGATCTAAAAGTTGTCAACTAATAAAATGTTTATCATGATATCAGCAACATTTTATTAGTTTACCAATTTTCAATATCTTCCACAGGAATCGAGATAATCGACCTCAAAGTTGATGATTCGTGTCTATTAGAGTGTTTACGGTGTTCTAACTATTCATGTACTTTAAGCTCAGTTATCTCGATTTACGGAAGTGATATCAAAAATTTGTTAACTCATAAAATGTTTATCATCAAATTATCAACATTTGATCAGCTGACAGCTTTTTGATATCTATTACAGTATTCGAGATAATTGAGCTCTAAGTGCAAAAAAAAAACGATATATTGATTACCTAGTGAAGGTTGAAGTTCTGAAAGTTTTTCTCATTTTTCAAAAAAAAAGAGAGAATTGACAGCTATCGGATTTCTCTGTGTGACAGTTAAAAGGGGACATCAATTTCGCGAAAAAAAAGTGCAAAGCCATTATTTTTGATGTTCACTCTTCTCTCTTTTTCATCCGCAAAACTGACAACTGACAACTTTTTTTCTAGGGTTTTTAGTGGTCATTTCAGAGGAAAATTGGGAGATTTTGGAGTTCAAGAGGGTCTTAGGAAGGTTGAGTTCTTATTTGGAAACGATAGAAATTGAAAAAATCATTCAATTTTGTTTTTTTTAATTAACGGGAAGTCGTAATTTCCGAAAAATTGAAATTCGGGAACTCTCTCTTCCATCACAAGTTCACTTCTCTGAGCTGCTTTTTTTTTGTGAAAAAAAGTCCATCCCTTCTAAAAATAAATTTACTAAATCCAGTACTTTTAATCTCCCATGGATAATCCGAAATTCGATTTTTTATGTCATAATAAAATTTTGGCAACATTCTCCTCTCACCCAATTTAATCCCAAAAATGTTGATCCAATAATCCACTCATATTTTTGATGAGAATATCTTCAATATTTTGATTCCA</canonical>
            <polymorphic>CGGAACGCCACCCGGACCGTTTACTCTGAGTCTATATATCTCAATTCTTTTGAAAGAGATCTAAAAGTTGTCAACTAATAAAATGTTTATCATGATATCAGCAACATTTTATTAGTTTACCAATTTTCAATATCTTCCACAGGAATCGAGATAATCGACCTCAAAGTTGATGATTCGTGTCTATTAGAGTGTTTACGGTGTTCTAACTATTCATGTACTTTAAGCTCAGTTATCTCGATTTACGGAAGTGATATCAAAAATTTGTTAACTCATAAAATGTTTATCATCAAATTATCAACATTTGATCAGCTGACAGCTTTTTGATATCTATTACAGTATTCGAGATAATTGAGCTCTAAGTGCAAAAAAAAAACGATATATTGATTACCTAGTGAAGGTTGAAGTTCTGAAAGTTTTTCTCATTTTTCAAAAAAAAAGAGAGAATTGACAGCTATCGGATTTCTCTGTGTGACAGTTAAAAGGGGACATCAATTTCGCGYAAAAAAAGTGCAAAGCCATTATTTTTGATGTTCACTCTTCTCTCTTTTTCATCCGCAAAACTGACAACTGACAACTTTTTTTCTAGGGTTTTTAGTGGTCATTTCAGAGGAAAATTGGGAGATTTTGGAGTTCAAGAGGGTCTTAGGAAGGTTGAGTTCTTATTTGGAAACGATAGAAATTGAAAAAATCATTCAATTTTGTTTTTTTTAATTAACGGGAAGTCGTAATTTCCGAAAAATTGAAATTCGGGAACTCTCTCTTCCATCACAAGTTCACTTCTCTGAGCTGCTTTTTTTTTGTGAAAAAAAGTCCATCCCTTCTAAAAATAAATTTACTAAATCCAGTACTTTTAATCTCCCATGGATAATCCGAAATTCGATTTTTTATGTCATAATAAAATTTTGGCAACATTCTCCTCTCACCCAATTTAATCCCAAAAATGTTGATCCAATAATCCACTCATATTTTTGATGAGAATATCTTCAATATTTTGATTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGCGA</site>
                <isoschizomers>
                    <enzyme>Bsp68I</enzyme>
                    <enzyme>NruI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>252 155 137 115 107 91 87 56</canonical_bands>
                <polymorphic_bands>292 252 115 107 91 87 56</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGTTCTGAAAGTTTTTCTCATT</pcr_primer_p1>
		<pcr_primer_p2>CTTCCTAAGACCCTCTTGAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGTTCTGAAAGTTTTTCTCATTTTTCAAAAAAAAAGAGAGAATTGACAGCTATCGGATTTCTCTGTGTGACAGTTAAAAGGGGACATCAATTTCGCGAAAAAAAAGTGCAAAGCCATTATTTTTGATGTTCACTCTTCTCTCTTTTTCATCCGCAAAACTGACAACTGACAACTTTTTTTCTAGGGTTTTTAGTGGTCATTTCAGAGGAAAATTGGGAGATTTTGGAGTTCAAGAGGGTCTTAGGAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAGTTCTGAAAGTTTTTCTCATTTTTCAAAAAAAAAGAGAGAATTGACAGCTATCGGATTTCTCTGTGTGACAGTTAAAAGGGGACATCAATTTCGCGYAAAAAAAGTGCAAAGCCATTATTTTTGATGTTCACTCTTCTCTCTTTTTCATCCGCAAAACTGACAACTGACAACTTTTTTTCTAGGGTTTTTAGTGGTCATTTCAGAGGAAAATTGGGAGATTTTGGAGTTCAAGAGGGTCTTAGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30336</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>113472</contig_pos>
        <strand></strand>
        <context>GTTCACTCTT[C/T]TCTCTTTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATTTCGCGAAAAAAAAGTGCAAAGCCATTATTTTTGATGTTCACTCTT</left_flank>
        <right_flank>TCTCTTTTTCATCCGCAAAACTGACAACTGACAACTTTTTTTCTAGGGTT</right_flank>
        <qual_score>50</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAATTCTTTTGAAAGAGATCTAAAAGTTGTCAACTAATAAAATGTTTATCATGATATCAGCAACATTTTATTAGTTTACCAATTTTCAATATCTTCCACAGGAATCGAGATAATCGACCTCAAAGTTGATGATTCGTGTCTATTAGAGTGTTTACGGTGTTCTAACTATTCATGTACTTTAAGCTCAGTTATCTCGATTTACGGAAGTGATATCAAAAATTTGTTAACTCATAAAATGTTTATCATCAAATTATCAACATTTGATCAGCTGACAGCTTTTTGATATCTATTACAGTATTCGAGATAATTGAGCTCTAAGTGCAAAAAAAAAACGATATATTGATTACCTAGTGAAGGTTGAAGTTCTGAAAGTTTTTCTCATTTTTCAAAAAAAAAGAGAGAATTGACAGCTATCGGATTTCTCTGTGTGACAGTTAAAAGGGGACATCAATTTCGCGAAAAAAAAGTGCAAAGCCATTATTTTTGATGTTCACTCTTCTCTCTTTTTCATCCGCAAAACTGACAACTGACAACTTTTTTTCTAGGGTTTTTAGTGGTCATTTCAGAGGAAAATTGGGAGATTTTGGAGTTCAAGAGGGTCTTAGGAAGGTTGAGTTCTTATTTGGAAACGATAGAAATTGAAAAAATCATTCAATTTTGTTTTTTTTAATTAACGGGAAGTCGTAATTTCCGAAAAATTGAAATTCGGGAACTCTCTCTTCCATCACAAGTTCACTTCTCTGAGCTGCTTTTTTTTTGTGAAAAAAAGTCCATCCCTTCTAAAAATAAATTTACTAAATCCAGTACTTTTAATCTCCCATGGATAATCCGAAATTCGATTTTTTATGTCATAATAAAATTTTGGCAACATTCTCCTCTCACCCAATTTAATCCCAAAAATGTTGATCCAATAATCCACTCATATTTTTGATGAGAATATCTTCAATATTTTGATTCCATCTACCAGAAATTCAAAATTTTCATATTTTAGAATTTTAG</canonical>
            <polymorphic>TCAATTCTTTTGAAAGAGATCTAAAAGTTGTCAACTAATAAAATGTTTATCATGATATCAGCAACATTTTATTAGTTTACCAATTTTCAATATCTTCCACAGGAATCGAGATAATCGACCTCAAAGTTGATGATTCGTGTCTATTAGAGTGTTTACGGTGTTCTAACTATTCATGTACTTTAAGCTCAGTTATCTCGATTTACGGAAGTGATATCAAAAATTTGTTAACTCATAAAATGTTTATCATCAAATTATCAACATTTGATCAGCTGACAGCTTTTTGATATCTATTACAGTATTCGAGATAATTGAGCTCTAAGTGCAAAAAAAAAACGATATATTGATTACCTAGTGAAGGTTGAAGTTCTGAAAGTTTTTCTCATTTTTCAAAAAAAAAGAGAGAATTGACAGCTATCGGATTTCTCTGTGTGACAGTTAAAAGGGGACATCAATTTCGCGAAAAAAAAGTGCAAAGCCATTATTTTTGATGTTCACTCTTYTCTCTTTTTCATCCGCAAAACTGACAACTGACAACTTTTTTTCTAGGGTTTTTAGTGGTCATTTCAGAGGAAAATTGGGAGATTTTGGAGTTCAAGAGGGTCTTAGGAAGGTTGAGTTCTTATTTGGAAACGATAGAAATTGAAAAAATCATTCAATTTTGTTTTTTTTAATTAACGGGAAGTCGTAATTTCCGAAAAATTGAAATTCGGGAACTCTCTCTTCCATCACAAGTTCACTTCTCTGAGCTGCTTTTTTTTTGTGAAAAAAAGTCCATCCCTTCTAAAAATAAATTTACTAAATCCAGTACTTTTAATCTCCCATGGATAATCCGAAATTCGATTTTTTATGTCATAATAAAATTTTGGCAACATTCTCCTCTCACCCAATTTAATCCCAAAAATGTTGATCCAATAATCCACTCATATTTTTGATGAGAATATCTTCAATATTTTGATTCCATCTACCAGAAATTCAAAATTTTCATATTTTAGAATTTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTTCTGAAAGTTTTTCTCATT</pcr_primer_p1>
		<pcr_primer_p2>CTTCCTAAGACCCTCTTGAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGTTCTGAAAGTTTTTCTCATTTTTCAAAAAAAAAGAGAGAATTGACAGCTATCGGATTTCTCTGTGTGACAGTTAAAAGGGGACATCAATTTCGCGAAAAAAAAGTGCAAAGCCATTATTTTTGATGTTCACTCTTCTCTCTTTTTCATCCGCAAAACTGACAACTGACAACTTTTTTTCTAGGGTTTTTAGTGGTCATTTCAGAGGAAAATTGGGAGATTTTGGAGTTCAAGAGGGTCTTAGGAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAGTTCTGAAAGTTTTTCTCATTTTTCAAAAAAAAAGAGAGAATTGACAGCTATCGGATTTCTCTGTGTGACAGTTAAAAGGGGACATCAATTTCGCGAAAAAAAAGTGCAAAGCCATTATTTTTGATGTTCACTCTTYTCTCTTTTTCATCCGCAAAACTGACAACTGACAACTTTTTTTCTAGGGTTTTTAGTGGTCATTTCAGAGGAAAATTGGGAGATTTTGGAGTTCAAGAGGGTCTTAGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30337</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>113723</contig_pos>
        <strand>+</strand>
        <context>TCTGAGCTGC[C/T]TTTTTTTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAATTCGGGAACTCTCTCTTCCATCACAAGTTCACTTCTCTGAGCTGC</left_flank>
        <right_flank>TTTTTTTTGTGAAAAAAAGTCCATCCCTTCTAAAAATAAATTTACTAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATCAACATTTGATCAGCTGACAGCTTTTTGATATCTATTACAGTATTCGAGATAATTGAGCTCTAAGTGCAAAAAAAAAACGATATATTGATTACCTAGTGAAGGTTGAAGTTCTGAAAGTTTTTCTCATTTTTCAAAAAAAAAGAGAGAATTGACAGCTATCGGATTTCTCTGTGTGACAGTTAAAAGGGGACATCAATTTCGCGAAAAAAAAGTGCAAAGCCATTATTTTTGATGTTCACTCTTCTCTCTTTTTCATCCGCAAAACTGACAACTGACAACTTTTTTTCTAGGGTTTTTAGTGGTCATTTCAGAGGAAAATTGGGAGATTTTGGAGTTCAAGAGGGTCTTAGGAAGGTTGAGTTCTTATTTGGAAACGATAGAAATTGAAAAAATCATTCAATTTTGTTTTTTTTAATTAACGGGAAGTCGTAATTTCCGAAAAATTGAAATTCGGGAACTCTCTCTTCCATCACAAGTTCACTTCTCTGAGCTGCTTTTTTTTTGTGAAAAAAAGTCCATCCCTTCTAAAAATAAATTTACTAAATCCAGTACTTTTAATCTCCCATGGATAATCCGAAATTCGATTTTTTATGTCATAATAAAATTTTGGCAACATTCTCCTCTCACCCAATTTAATCCCAAAAATGTTGATCCAATAATCCACTCATATTTTTGATGAGAATATCTTCAATATTTTGATTCCATCTACCAGAAATTCAAAATTTTCATATTTTAGAATTTTAGAATTTTAGAATTCCTAAATTTTCAAATAATTTGGAATTGGTTTAAAAATCTCGGATTTTGGAAATTTTCGGATTCAAAACATCTCAAAATTTCGAATTTACAACCCGTCTTTTTTATCCTTTGCCGCCTGTGAATCATTTTTTTTCTCTTCCTCTTCTTTTCTTTCTTCTCCTCCAGATTTCACAAAATTTTCGGAACATGACATCTCGAGCGAGTAGCCGGCCGGGTCCTCCAAGAGGTGTGATTTAGCA</canonical>
            <polymorphic>TTATCAACATTTGATCAGCTGACAGCTTTTTGATATCTATTACAGTATTCGAGATAATTGAGCTCTAAGTGCAAAAAAAAAACGATATATTGATTACCTAGTGAAGGTTGAAGTTCTGAAAGTTTTTCTCATTTTTCAAAAAAAAAGAGAGAATTGACAGCTATCGGATTTCTCTGTGTGACAGTTAAAAGGGGACATCAATTTCGCGAAAAAAAAGTGCAAAGCCATTATTTTTGATGTTCACTCTTCTCTCTTTTTCATCCGCAAAACTGACAACTGACAACTTTTTTTCTAGGGTTTTTAGTGGTCATTTCAGAGGAAAATTGGGAGATTTTGGAGTTCAAGAGGGTCTTAGGAAGGTTGAGTTCTTATTTGGAAACGATAGAAATTGAAAAAATCATTCAATTTTGTTTTTTTTAATTAACGGGAAGTCGTAATTTCCGAAAAATTGAAATTCGGGAACTCTCTCTTCCATCACAAGTTCACTTCTCTGAGCTGCYTTTTTTTTGTGAAAAAAAGTCCATCCCTTCTAAAAATAAATTTACTAAATCCAGTACTTTTAATCTCCCATGGATAATCCGAAATTCGATTTTTTATGTCATAATAAAATTTTGGCAACATTCTCCTCTCACCCAATTTAATCCCAAAAATGTTGATCCAATAATCCACTCATATTTTTGATGAGAATATCTTCAATATTTTGATTCCATCTACCAGAAATTCAAAATTTTCATATTTTAGAATTTTAGAATTTTAGAATTCCTAAATTTTCAAATAATTTGGAATTGGTTTAAAAATCTCGGATTTTGGAAATTTTCGGATTCAAAACATCTCAAAATTTCGAATTTACAACCCGTCTTTTTTATCCTTTGCCGCCTGTGAATCATTTTTTTTCTCTTCCTCTTCTTTTCTTTCTTCTCCTCCAGATTTCACAAAATTTTCGGAACATGACATCTCGAGCGAGTAGCCGGCCGGGTCCTCCAAGAGGTGTGATTTAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTGGAAACGATAGAAATTGA</pcr_primer_p1>
		<pcr_primer_p2>ATGTTGCCAAAATTTTATTATGA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATTTGGAAACGATAGAAATTGAAAAAATCATTCAATTTTGTTTTTTTTAATTAACGGGAAGTCGTAATTTCCGAAAAATTGAAATTCGGGAACTCTCTCTTCCATCACAAGTTCACTTCTCTGAGCTGCTTTTTTTTTGTGAAAAAAAGTCCATCCCTTCTAAAAATAAATTTACTAAATCCAGTACTTTTAATCTCCCATGGATAATCCGAAATTCGATTTTTTATGTCATAATAAAATTTTGGCAACAT</canonical_amplicon>
		<polymorphic_amplicon>TATTTGGAAACGATAGAAATTGAAAAAATCATTCAATTTTGTTTTTTTTAATTAACGGGAAGTCGTAATTTCCGAAAAATTGAAATTCGGGAACTCTCTCTTCCATCACAAGTTCACTTCTCTGAGCTGCYTTTTTTTTGTGAAAAAAAGTCCATCCCTTCTAAAAATAAATTTACTAAATCCAGTACTTTTAATCTCCCATGGATAATCCGAAATTCGATTTTTTATGTCATAATAAAATTTTGGCAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30338</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>113743</contig_pos>
        <strand></strand>
        <context>TGAAAAAAAG[T/C]CCATCCCTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCCATCACAAGTTCACTTCTCTGAGCTGCTTTTTTTTTGTGAAAAAAAG</left_flank>
        <right_flank>CCATCCCTTCTAAAAATAAATTTACTAAATCCAGTACTTTTAATCTCCCA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACAGCTTTTTGATATCTATTACAGTATTCGAGATAATTGAGCTCTAAGTGCAAAAAAAAAACGATATATTGATTACCTAGTGAAGGTTGAAGTTCTGAAAGTTTTTCTCATTTTTCAAAAAAAAAGAGAGAATTGACAGCTATCGGATTTCTCTGTGTGACAGTTAAAAGGGGACATCAATTTCGCGAAAAAAAAGTGCAAAGCCATTATTTTTGATGTTCACTCTTCTCTCTTTTTCATCCGCAAAACTGACAACTGACAACTTTTTTTCTAGGGTTTTTAGTGGTCATTTCAGAGGAAAATTGGGAGATTTTGGAGTTCAAGAGGGTCTTAGGAAGGTTGAGTTCTTATTTGGAAACGATAGAAATTGAAAAAATCATTCAATTTTGTTTTTTTTAATTAACGGGAAGTCGTAATTTCCGAAAAATTGAAATTCGGGAACTCTCTCTTCCATCACAAGTTCACTTCTCTGAGCTGCTTTTTTTTTGTGAAAAAAAGTCCATCCCTTCTAAAAATAAATTTACTAAATCCAGTACTTTTAATCTCCCATGGATAATCCGAAATTCGATTTTTTATGTCATAATAAAATTTTGGCAACATTCTCCTCTCACCCAATTTAATCCCAAAAATGTTGATCCAATAATCCACTCATATTTTTGATGAGAATATCTTCAATATTTTGATTCCATCTACCAGAAATTCAAAATTTTCATATTTTAGAATTTTAGAATTTTAGAATTCCTAAATTTTCAAATAATTTGGAATTGGTTTAAAAATCTCGGATTTTGGAAATTTTCGGATTCAAAACATCTCAAAATTTCGAATTTACAACCCGTCTTTTTTATCCTTTGCCGCCTGTGAATCATTTTTTTTCTCTTCCTCTTCTTTTCTTTCTTCTCCTCCAGATTTCACAAAATTTTCGGAACATGACATCTCGAGCGAGTAGCCGGCCGGGTCCTCCAAGAGGTGTGATTTAGCAACATTTGTTACAAAAAAGAA</canonical>
            <polymorphic>GACAGCTTTTTGATATCTATTACAGTATTCGAGATAATTGAGCTCTAAGTGCAAAAAAAAAACGATATATTGATTACCTAGTGAAGGTTGAAGTTCTGAAAGTTTTTCTCATTTTTCAAAAAAAAAGAGAGAATTGACAGCTATCGGATTTCTCTGTGTGACAGTTAAAAGGGGACATCAATTTCGCGAAAAAAAAGTGCAAAGCCATTATTTTTGATGTTCACTCTTCTCTCTTTTTCATCCGCAAAACTGACAACTGACAACTTTTTTTCTAGGGTTTTTAGTGGTCATTTCAGAGGAAAATTGGGAGATTTTGGAGTTCAAGAGGGTCTTAGGAAGGTTGAGTTCTTATTTGGAAACGATAGAAATTGAAAAAATCATTCAATTTTGTTTTTTTTAATTAACGGGAAGTCGTAATTTCCGAAAAATTGAAATTCGGGAACTCTCTCTTCCATCACAAGTTCACTTCTCTGAGCTGCTTTTTTTTTGTGAAAAAAAGYCCATCCCTTCTAAAAATAAATTTACTAAATCCAGTACTTTTAATCTCCCATGGATAATCCGAAATTCGATTTTTTATGTCATAATAAAATTTTGGCAACATTCTCCTCTCACCCAATTTAATCCCAAAAATGTTGATCCAATAATCCACTCATATTTTTGATGAGAATATCTTCAATATTTTGATTCCATCTACCAGAAATTCAAAATTTTCATATTTTAGAATTTTAGAATTTTAGAATTCCTAAATTTTCAAATAATTTGGAATTGGTTTAAAAATCTCGGATTTTGGAAATTTTCGGATTCAAAACATCTCAAAATTTCGAATTTACAACCCGTCTTTTTTATCCTTTGCCGCCTGTGAATCATTTTTTTTCTCTTCCTCTTCTTTTCTTTCTTCTCCTCCAGATTTCACAAAATTTTCGGAACATGACATCTCGAGCGAGTAGCCGGCCGGGTCCTCCAAGAGGTGTGATTTAGCAACATTTGTTACAAAAAAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTGGAAACGATAGAAATTGA</pcr_primer_p1>
		<pcr_primer_p2>ATGTTGCCAAAATTTTATTATGA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATTTGGAAACGATAGAAATTGAAAAAATCATTCAATTTTGTTTTTTTTAATTAACGGGAAGTCGTAATTTCCGAAAAATTGAAATTCGGGAACTCTCTCTTCCATCACAAGTTCACTTCTCTGAGCTGCTTTTTTTTTGTGAAAAAAAGTCCATCCCTTCTAAAAATAAATTTACTAAATCCAGTACTTTTAATCTCCCATGGATAATCCGAAATTCGATTTTTTATGTCATAATAAAATTTTGGCAACAT</canonical_amplicon>
		<polymorphic_amplicon>TATTTGGAAACGATAGAAATTGAAAAAATCATTCAATTTTGTTTTTTTTAATTAACGGGAAGTCGTAATTTCCGAAAAATTGAAATTCGGGAACTCTCTCTTCCATCACAAGTTCACTTCTCTGAGCTGCTTTTTTTTTGTGAAAAAAAGYCCATCCCTTCTAAAAATAAATTTACTAAATCCAGTACTTTTAATCTCCCATGGATAATCCGAAATTCGATTTTTTATGTCATAATAAAATTTTGGCAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30339</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>171338</contig_pos>
        <strand>+</strand>
        <context>GATTCACTGG[A/G]TCTCCTCAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCGCCTCTCCAACTCTTATCCTGCTTCAATATCTCTATGGATTCACTGG</left_flank>
        <right_flank>TCTCCTCAAATCTCTCTCCAGCCAAACCATCGGCTCAATCGGATGCACCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCTTTGAGCAATCGTCTTCAAAATCTAGTGGATTTTTTGCCAGAAGGAGAGACAAAACGGAAAGTTGAGGTGAGGAACTTTCAAAAAACAAAAAACAAACGAAAACCCCTACAGAGGGATTGAACCCCTGACCTCGCATAGCGTCCCCACACACATCCTTGACACCACGCAGCCCGCAACAACAGAGGGTGGGAATTGCGCTTAAGTGTGTGGCTCTTTTTGTCGGCGGGCGGTTAATTGAAATCAAAAAAATGGAAAGATAAATTTCAGGTCTACCACTCCCAACTTCTCCAGATGAGCACTCATGAGCAGGATAATTCTACCACACCACCTATTGCGGAGAACTACAATACACCTCAAAGCTACAGTAACCCTCCGAGCTACAGTACTCCTTCAAGCTACAGTACCCCTTCAAGCTACAGTAACCCTTCAAAATCCCGAAAATTCTCGCCTCTCCAACTCTTATCCTGCTTCAATATCTCTATGGATTCACTGGGTCTCCTCAAATCTCTCTCCAGCCAAACCATCGGCTCAATCGGATGCACCAAATTCCAGATTTGCTCATTTTCAGATTTGTCTGAAAATTGGTGTCTTTCCCATTTGAATATCACAGAAAATCAATACAATTCAGTGATTGGGGAAACTATTGGAGAGGTTTTAAAAGATAATATGAGCCCTGAAAAGCAGTTTGGAGCACTCTTTGGCGGAATTTCGAGATTCAGAAGGACGCCGGAACCGGATTATGAAGAAGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAA</canonical>
            <polymorphic>AATTCTTTGAGCAATCGTCTTCAAAATCTAGTGGATTTTTTGCCAGAAGGAGAGACAAAACGGAAAGTTGAGGTGAGGAACTTTCAAAAAACAAAAAACAAACGAAAACCCCTACAGAGGGATTGAACCCCTGACCTCGCATAGCGTCCCCACACACATCCTTGACACCACGCAGCCCGCAACAACAGAGGGTGGGAATTGCGCTTAAGTGTGTGGCTCTTTTTGTCGGCGGGCGGTTAATTGAAATCAAAAAAATGGAAAGATAAATTTCAGGTCTACCACTCCCAACTTCTCCAGATGAGCACTCATGAGCAGGATAATTCTACCACACCACCTATTGCGGAGAACTACAATACACCTCAAAGCTACAGTAACCCTCCGAGCTACAGTACTCCTTCAAGCTACAGTACCCCTTCAAGCTACAGTAACCCTTCAAAATCCCGAAAATTCTCGCCTCTCCAACTCTTATCCTGCTTCAATATCTCTATGGATTCACTGGRTCTCCTCAAATCTCTCTCCAGCCAAACCATCGGCTCAATCGGATGCACCAAATTCCAGATTTGCTCATTTTCAGATTTGTCTGAAAATTGGTGTCTTTCCCATTTGAATATCACAGAAAATCAATACAATTCAGTGATTGGGGAAACTATTGGAGAGGTTTTAAAAGATAATATGAGCCCTGAAAAGCAGTTTGGAGCACTCTTTGGCGGAATTTCGAGATTCAGAAGGACGCCGGAACCGGATTATGAAGAAGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCTACAGTAACCCTTCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTAAAACCTCTCCAATAGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGCTACAGTAACCCTTCAAAATCCCGAAAATTCTCGCCTCTCCAACTCTTATCCTGCTTCAATATCTCTATGGATTCACTGGGTCTCCTCAAATCTCTCTCCAGCCAAACCATCGGCTCAATCGGATGCACCAAATTCCAGATTTGCTCATTTTCAGATTTGTCTGAAAATTGGTGTCTTTCCCATTTGAATATCACAGAAAATCAATACAATTCAGTGATTGGGGAAACTATTGGAGAGGTTTTAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAGCTACAGTAACCCTTCAAAATCCCGAAAATTCTCGCCTCTCCAACTCTTATCCTGCTTCAATATCTCTATGGATTCACTGGRTCTCCTCAAATCTCTCTCCAGCCAAACCATCGGCTCAATCGGATGCACCAAATTCCAGATTTGCTCATTTTCAGATTTGTCTGAAAATTGGTGTCTTTCCCATTTGAATATCACAGAAAATCAATACAATTCAGTGATTGGGGAAACTATTGGAGAGGTTTTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30340</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>171527</contig_pos>
        <strand>+</strand>
        <context>CCTGAAAAGC[A/T]GTTTGGAGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGGGGAAACTATTGGAGAGGTTTTAAAAGATAATATGAGCCCTGAAAAGC</left_flank>
        <right_flank>GTTTGGAGCACTCTTTGGCGGAATTTCGAGATTCAGAAGGACGCCGGAAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGTGGGAATTGCGCTTAAGTGTGTGGCTCTTTTTGTCGGCGGGCGGTTAATTGAAATCAAAAAAATGGAAAGATAAATTTCAGGTCTACCACTCCCAACTTCTCCAGATGAGCACTCATGAGCAGGATAATTCTACCACACCACCTATTGCGGAGAACTACAATACACCTCAAAGCTACAGTAACCCTCCGAGCTACAGTACTCCTTCAAGCTACAGTACCCCTTCAAGCTACAGTAACCCTTCAAAATCCCGAAAATTCTCGCCTCTCCAACTCTTATCCTGCTTCAATATCTCTATGGATTCACTGGGTCTCCTCAAATCTCTCTCCAGCCAAACCATCGGCTCAATCGGATGCACCAAATTCCAGATTTGCTCATTTTCAGATTTGTCTGAAAATTGGTGTCTTTCCCATTTGAATATCACAGAAAATCAATACAATTCAGTGATTGGGGAAACTATTGGAGAGGTTTTAAAAGATAATATGAGCCCTGAAAAGCAGTTTGGAGCACTCTTTGGCGGAATTTCGAGATTCAGAAGGACGCCGGAACCGGATTATGAAGAAGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCA</canonical>
            <polymorphic>GGGTGGGAATTGCGCTTAAGTGTGTGGCTCTTTTTGTCGGCGGGCGGTTAATTGAAATCAAAAAAATGGAAAGATAAATTTCAGGTCTACCACTCCCAACTTCTCCAGATGAGCACTCATGAGCAGGATAATTCTACCACACCACCTATTGCGGAGAACTACAATACACCTCAAAGCTACAGTAACCCTCCGAGCTACAGTACTCCTTCAAGCTACAGTACCCCTTCAAGCTACAGTAACCCTTCAAAATCCCGAAAATTCTCGCCTCTCCAACTCTTATCCTGCTTCAATATCTCTATGGATTCACTGGGTCTCCTCAAATCTCTCTCCAGCCAAACCATCGGCTCAATCGGATGCACCAAATTCCAGATTTGCTCATTTTCAGATTTGTCTGAAAATTGGTGTCTTTCCCATTTGAATATCACAGAAAATCAATACAATTCAGTGATTGGGGAAACTATTGGAGAGGTTTTAAAAGATAATATGAGCCCTGAAAAGCWGTTTGGAGCACTCTTTGGCGGAATTTCGAGATTCAGAAGGACGCCGGAACCGGATTATGAAGAAGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTCTTTCCCATTTGAATATC</pcr_primer_p1>
		<pcr_primer_p2>CTTATTCCTTCCAGAATCTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTGTCTTTCCCATTTGAATATCACAGAAAATCAATACAATTCAGTGATTGGGGAAACTATTGGAGAGGTTTTAAAAGATAATATGAGCCCTGAAAAGCAGTTTGGAGCACTCTTTGGCGGAATTTCGAGATTCAGAAGGACGCCGGAACCGGATTATGAAGAAGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAG</canonical_amplicon>
		<polymorphic_amplicon>GTGTCTTTCCCATTTGAATATCACAGAAAATCAATACAATTCAGTGATTGGGGAAACTATTGGAGAGGTTTTAAAAGATAATATGAGCCCTGAAAAGCWGTTTGGAGCACTCTTTGGCGGAATTTCGAGATTCAGAAGGACGCCGGAACCGGATTATGAAGAAGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30341</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>171591</contig_pos>
        <strand>+</strand>
        <context>ATTATGAAGA[A/C]GTGACGCTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTGGCGGAATTTCGAGATTCAGAAGGACGCCGGAACCGGATTATGAAGA</left_flank>
        <right_flank>GTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGGAAAGATAAATTTCAGGTCTACCACTCCCAACTTCTCCAGATGAGCACTCATGAGCAGGATAATTCTACCACACCACCTATTGCGGAGAACTACAATACACCTCAAAGCTACAGTAACCCTCCGAGCTACAGTACTCCTTCAAGCTACAGTACCCCTTCAAGCTACAGTAACCCTTCAAAATCCCGAAAATTCTCGCCTCTCCAACTCTTATCCTGCTTCAATATCTCTATGGATTCACTGGGTCTCCTCAAATCTCTCTCCAGCCAAACCATCGGCTCAATCGGATGCACCAAATTCCAGATTTGCTCATTTTCAGATTTGTCTGAAAATTGGTGTCTTTCCCATTTGAATATCACAGAAAATCAATACAATTCAGTGATTGGGGAAACTATTGGAGAGGTTTTAAAAGATAATATGAGCCCTGAAAAGCAGTTTGGAGCACTCTTTGGCGGAATTTCGAGATTCAGAAGGACGCCGGAACCGGATTATGAAGAAGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTC</canonical>
            <polymorphic>AATGGAAAGATAAATTTCAGGTCTACCACTCCCAACTTCTCCAGATGAGCACTCATGAGCAGGATAATTCTACCACACCACCTATTGCGGAGAACTACAATACACCTCAAAGCTACAGTAACCCTCCGAGCTACAGTACTCCTTCAAGCTACAGTACCCCTTCAAGCTACAGTAACCCTTCAAAATCCCGAAAATTCTCGCCTCTCCAACTCTTATCCTGCTTCAATATCTCTATGGATTCACTGGGTCTCCTCAAATCTCTCTCCAGCCAAACCATCGGCTCAATCGGATGCACCAAATTCCAGATTTGCTCATTTTCAGATTTGTCTGAAAATTGGTGTCTTTCCCATTTGAATATCACAGAAAATCAATACAATTCAGTGATTGGGGAAACTATTGGAGAGGTTTTAAAAGATAATATGAGCCCTGAAAAGCAGTTTGGAGCACTCTTTGGCGGAATTTCGAGATTCAGAAGGACGCCGGAACCGGATTATGAAGAMGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTCTTTCCCATTTGAATATC</pcr_primer_p1>
		<pcr_primer_p2>CTTATTCCTTCCAGAATCTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTGTCTTTCCCATTTGAATATCACAGAAAATCAATACAATTCAGTGATTGGGGAAACTATTGGAGAGGTTTTAAAAGATAATATGAGCCCTGAAAAGCAGTTTGGAGCACTCTTTGGCGGAATTTCGAGATTCAGAAGGACGCCGGAACCGGATTATGAAGAAGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAG</canonical_amplicon>
		<polymorphic_amplicon>GTGTCTTTCCCATTTGAATATCACAGAAAATCAATACAATTCAGTGATTGGGGAAACTATTGGAGAGGTTTTAAAAGATAATATGAGCCCTGAAAAGCAGTTTGGAGCACTCTTTGGCGGAATTTCGAGATTCAGAAGGACGCCGGAACCGGATTATGAAGAMGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30342</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>171637</contig_pos>
        <strand>+</strand>
        <context>AATTATGGAA[A/G]AAAGAGGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGAAGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAA</left_flank>
        <right_flank>AAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCACTCATGAGCAGGATAATTCTACCACACCACCTATTGCGGAGAACTACAATACACCTCAAAGCTACAGTAACCCTCCGAGCTACAGTACTCCTTCAAGCTACAGTACCCCTTCAAGCTACAGTAACCCTTCAAAATCCCGAAAATTCTCGCCTCTCCAACTCTTATCCTGCTTCAATATCTCTATGGATTCACTGGGTCTCCTCAAATCTCTCTCCAGCCAAACCATCGGCTCAATCGGATGCACCAAATTCCAGATTTGCTCATTTTCAGATTTGTCTGAAAATTGGTGTCTTTCCCATTTGAATATCACAGAAAATCAATACAATTCAGTGATTGGGGAAACTATTGGAGAGGTTTTAAAAGATAATATGAGCCCTGAAAAGCAGTTTGGAGCACTCTTTGGCGGAATTTCGAGATTCAGAAGGACGCCGGAACCGGATTATGAAGAAGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAA</canonical>
            <polymorphic>GAGCACTCATGAGCAGGATAATTCTACCACACCACCTATTGCGGAGAACTACAATACACCTCAAAGCTACAGTAACCCTCCGAGCTACAGTACTCCTTCAAGCTACAGTACCCCTTCAAGCTACAGTAACCCTTCAAAATCCCGAAAATTCTCGCCTCTCCAACTCTTATCCTGCTTCAATATCTCTATGGATTCACTGGGTCTCCTCAAATCTCTCTCCAGCCAAACCATCGGCTCAATCGGATGCACCAAATTCCAGATTTGCTCATTTTCAGATTTGTCTGAAAATTGGTGTCTTTCCCATTTGAATATCACAGAAAATCAATACAATTCAGTGATTGGGGAAACTATTGGAGAGGTTTTAAAAGATAATATGAGCCCTGAAAAGCAGTTTGGAGCACTCTTTGGCGGAATTTCGAGATTCAGAAGGACGCCGGAACCGGATTATGAAGAAGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAARAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAAGATAATATGAGCCCTGAA</pcr_primer_p1>
		<pcr_primer_p2>ATCATCGTTTCCTCTGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAAAAGATAATATGAGCCCTGAAAAGCAGTTTGGAGCACTCTTTGGCGGAATTTCGAGATTCAGAAGGACGCCGGAACCGGATTATGAAGAAGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGAT</canonical_amplicon>
		<polymorphic_amplicon>TAAAAGATAATATGAGCCCTGAAAAGCAGTTTGGAGCACTCTTTGGCGGAATTTCGAGATTCAGAAGGACGCCGGAACCGGATTATGAAGAAGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAARAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30343</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>171704</contig_pos>
        <strand>+</strand>
        <context>GAAGGTTCAG[A/C]ATATCCAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAG</left_flank>
        <right_flank>ATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACAGTAACCCTCCGAGCTACAGTACTCCTTCAAGCTACAGTACCCCTTCAAGCTACAGTAACCCTTCAAAATCCCGAAAATTCTCGCCTCTCCAACTCTTATCCTGCTTCAATATCTCTATGGATTCACTGGGTCTCCTCAAATCTCTCTCCAGCCAAACCATCGGCTCAATCGGATGCACCAAATTCCAGATTTGCTCATTTTCAGATTTGTCTGAAAATTGGTGTCTTTCCCATTTGAATATCACAGAAAATCAATACAATTCAGTGATTGGGGAAACTATTGGAGAGGTTTTAAAAGATAATATGAGCCCTGAAAAGCAGTTTGGAGCACTCTTTGGCGGAATTTCGAGATTCAGAAGGACGCCGGAACCGGATTATGAAGAAGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTG</canonical>
            <polymorphic>TACAGTAACCCTCCGAGCTACAGTACTCCTTCAAGCTACAGTACCCCTTCAAGCTACAGTAACCCTTCAAAATCCCGAAAATTCTCGCCTCTCCAACTCTTATCCTGCTTCAATATCTCTATGGATTCACTGGGTCTCCTCAAATCTCTCTCCAGCCAAACCATCGGCTCAATCGGATGCACCAAATTCCAGATTTGCTCATTTTCAGATTTGTCTGAAAATTGGTGTCTTTCCCATTTGAATATCACAGAAAATCAATACAATTCAGTGATTGGGGAAACTATTGGAGAGGTTTTAAAAGATAATATGAGCCCTGAAAAGCAGTTTGGAGCACTCTTTGGCGGAATTTCGAGATTCAGAAGGACGCCGGAACCGGATTATGAAGAAGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGMATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGACGTCAGGAGAATTATGG</pcr_primer_p1>
		<pcr_primer_p2>GACGTCTTCTGAATTTTTAAGTCT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTC</canonical_amplicon>
		<polymorphic_amplicon>AAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGMATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30344</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>171882</contig_pos>
        <strand>+</strand>
        <context>AAAATCCAGA[A/G]ATCAACAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGA</left_flank>
        <right_flank>ATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCACCAAATTCCAGATTTGCTCATTTTCAGATTTGTCTGAAAATTGGTGTCTTTCCCATTTGAATATCACAGAAAATCAATACAATTCAGTGATTGGGGAAACTATTGGAGAGGTTTTAAAAGATAATATGAGCCCTGAAAAGCAGTTTGGAGCACTCTTTGGCGGAATTTCGAGATTCAGAAGGACGCCGGAACCGGATTATGAAGAAGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAATCCAGAAGAAACGATAATTCAGAAGATGTACCAGACTCTGGAGAGACTGCGGAAGACGTCACACCTTCAAGAAGTTCCAAAAATCCGAAAATCGAAAAGAGAGAAGATTCAGAAGAAGTCGATTTTTC</canonical>
            <polymorphic>GCACCAAATTCCAGATTTGCTCATTTTCAGATTTGTCTGAAAATTGGTGTCTTTCCCATTTGAATATCACAGAAAATCAATACAATTCAGTGATTGGGGAAACTATTGGAGAGGTTTTAAAAGATAATATGAGCCCTGAAAAGCAGTTTGGAGCACTCTTTGGCGGAATTTCGAGATTCAGAAGGACGCCGGAACCGGATTATGAAGAAGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGARATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAATCCAGAAGAAACGATAATTCAGAAGATGTACCAGACTCTGGAGAGACTGCGGAAGACGTCACACCTTCAAGAAGTTCCAAAAATCCGAAAATCGAAAAGAGAGAAGATTCAGAAGAAGTCGATTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCGGAAGACTTAAAAATTCA</pcr_primer_p1>
		<pcr_primer_p2>CTACAACTTCTCCAGAATCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAG</canonical_amplicon>
		<polymorphic_amplicon>ATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGARATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30345</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>171922</contig_pos>
        <strand>+</strand>
        <context>GACGCCGTCA[A/G]GAAATTTCMA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCA</left_flank>
        <right_flank>GAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTGGTGTCTTTCCCATTTGAATATCACAGAAAATCAATACAATTCAGTGATTGGGGAAACTATTGGAGAGGTTTTAAAAGATAATATGAGCCCTGAAAAGCAGTTTGGAGCACTCTTTGGCGGAATTTCGAGATTCAGAAGGACGCCGGAACCGGATTATGAAGAAGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAATCCAGAAGAAACGATAATTCAGAAGATGTACCAGACTCTGGAGAGACTGCGGAAGACGTCACACCTTCAAGAAGTTCCAAAAATCCGAAAATCGAAAAGAGAGAAGATTCAGAAGAAGTCGATTTTTCCAGAAGCTCAGAAACCCCAAAATTGAAAGGTAACGATGAT</canonical>
            <polymorphic>AAATTGGTGTCTTTCCCATTTGAATATCACAGAAAATCAATACAATTCAGTGATTGGGGAAACTATTGGAGAGGTTTTAAAAGATAATATGAGCCCTGAAAAGCAGTTTGGAGCACTCTTTGGCGGAATTTCGAGATTCAGAAGGACGCCGGAACCGGATTATGAAGAAGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCARGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAATCCAGAAGAAACGATAATTCAGAAGATGTACCAGACTCTGGAGAGACTGCGGAAGACGTCACACCTTCAAGAAGTTCCAAAAATCCGAAAATCGAAAAGAGAGAAGATTCAGAAGAAGTCGATTTTTCCAGAAGCTCAGAAACCCCAAAATTGAAAGGTAACGATGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCGGAAGACTTAAAAATTCA</pcr_primer_p1>
		<pcr_primer_p2>CTACAACTTCTCCAGAATCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAG</canonical_amplicon>
		<polymorphic_amplicon>ATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCARGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30346</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>171931</contig_pos>
        <strand>+</strand>
        <context>ARGAAATTTC[A/C]AAAMCCCGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTC</left_flank>
        <right_flank>AAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTTCCCATTTGAATATCACAGAAAATCAATACAATTCAGTGATTGGGGAAACTATTGGAGAGGTTTTAAAAGATAATATGAGCCCTGAAAAGCAGTTTGGAGCACTCTTTGGCGGAATTTCGAGATTCAGAAGGACGCCGGAACCGGATTATGAAGAAGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAATCCAGAAGAAACGATAATTCAGAAGATGTACCAGACTCTGGAGAGACTGCGGAAGACGTCACACCTTCAAGAAGTTCCAAAAATCCGAAAATCGAAAAGAGAGAAGATTCAGAAGAAGTCGATTTTTCCAGAAGCTCAGAAACCCCAAAATTGAAAGGTAACGATGATTCAGAAGAC</canonical>
            <polymorphic>TCTTTCCCATTTGAATATCACAGAAAATCAATACAATTCAGTGATTGGGGAAACTATTGGAGAGGTTTTAAAAGATAATATGAGCCCTGAAAAGCAGTTTGGAGCACTCTTTGGCGGAATTTCGAGATTCAGAAGGACGCCGGAACCGGATTATGAAGAAGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCMAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAATCCAGAAGAAACGATAATTCAGAAGATGTACCAGACTCTGGAGAGACTGCGGAAGACGTCACACCTTCAAGAAGTTCCAAAAATCCGAAAATCGAAAAGAGAGAAGATTCAGAAGAAGTCGATTTTTCCAGAAGCTCAGAAACCCCAAAATTGAAAGGTAACGATGATTCAGAAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCGGAAGACTTAAAAATTCA</pcr_primer_p1>
		<pcr_primer_p2>CTACAACTTCTCCAGAATCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAG</canonical_amplicon>
		<polymorphic_amplicon>ATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCMAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30347</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>171935</contig_pos>
        <strand>+</strand>
        <context>AATTTCMAAA[A/C]CCCGAAATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAA</left_flank>
        <right_flank>CCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCCATTTGAATATCACAGAAAATCAATACAATTCAGTGATTGGGGAAACTATTGGAGAGGTTTTAAAAGATAATATGAGCCCTGAAAAGCAGTTTGGAGCACTCTTTGGCGGAATTTCGAGATTCAGAAGGACGCCGGAACCGGATTATGAAGAAGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAATCCAGAAGAAACGATAATTCAGAAGATGTACCAGACTCTGGAGAGACTGCGGAAGACGTCACACCTTCAAGAAGTTCCAAAAATCCGAAAATCGAAAAGAGAGAAGATTCAGAAGAAGTCGATTTTTCCAGAAGCTCAGAAACCCCAAAATTGAAAGGTAACGATGATTCAGAAGACGTCA</canonical>
            <polymorphic>TCCCATTTGAATATCACAGAAAATCAATACAATTCAGTGATTGGGGAAACTATTGGAGAGGTTTTAAAAGATAATATGAGCCCTGAAAAGCAGTTTGGAGCACTCTTTGGCGGAATTTCGAGATTCAGAAGGACGCCGGAACCGGATTATGAAGAAGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAMCCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAATCCAGAAGAAACGATAATTCAGAAGATGTACCAGACTCTGGAGAGACTGCGGAAGACGTCACACCTTCAAGAAGTTCCAAAAATCCGAAAATCGAAAAGAGAGAAGATTCAGAAGAAGTCGATTTTTCCAGAAGCTCAGAAACCCCAAAATTGAAAGGTAACGATGATTCAGAAGACGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCGGAAGACTTAAAAATTCA</pcr_primer_p1>
		<pcr_primer_p2>CTACAACTTCTCCAGAATCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAG</canonical_amplicon>
		<polymorphic_amplicon>ATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAMCCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30348</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>171993</contig_pos>
        <strand>+</strand>
        <context>TAGAAGACGT[A/C]AAGCTGTCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGT</left_flank>
        <right_flank>AAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTTTTAAAAGATAATATGAGCCCTGAAAAGCAGTTTGGAGCACTCTTTGGCGGAATTTCGAGATTCAGAAGGACGCCGGAACCGGATTATGAAGAAGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAATCCAGAAGAAACGATAATTCAGAAGATGTACCAGACTCTGGAGAGACTGCGGAAGACGTCACACCTTCAAGAAGTTCCAAAAATCCGAAAATCGAAAAGAGAGAAGATTCAGAAGAAGTCGATTTTTCCAGAAGCTCAGAAACCCCAAAATTGAAAGGTAACGATGATTCAGAAGACGTCACTAGTTTACGAGAACCTCCAGAAGACGTCACGCCTTCAGAAACCCCAAAAACTACAAA</canonical>
            <polymorphic>AGGTTTTAAAAGATAATATGAGCCCTGAAAAGCAGTTTGGAGCACTCTTTGGCGGAATTTCGAGATTCAGAAGGACGCCGGAACCGGATTATGAAGAAGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTMAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAATCCAGAAGAAACGATAATTCAGAAGATGTACCAGACTCTGGAGAGACTGCGGAAGACGTCACACCTTCAAGAAGTTCCAAAAATCCGAAAATCGAAAAGAGAGAAGATTCAGAAGAAGTCGATTTTTCCAGAAGCTCAGAAACCCCAAAATTGAAAGGTAACGATGATTCAGAAGACGTCACTAGTTTACGAGAACCTCCAGAAGACGTCACGCCTTCAGAAACCCCAAAAACTACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCGGAAGACTTAAAAATTCA</pcr_primer_p1>
		<pcr_primer_p2>CTACAACTTCTCCAGAATCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAG</canonical_amplicon>
		<polymorphic_amplicon>ATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTMAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30349</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>172077</contig_pos>
        <strand>+</strand>
        <context>AAGTTGTAGA[A/G]GAMGTCACGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGA</left_flank>
        <right_flank>GAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGATTATGAAGAAGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAATCCAGAAGAAACGATAATTCAGAAGATGTACCAGACTCTGGAGAGACTGCGGAAGACGTCACACCTTCAAGAAGTTCCAAAAATCCGAAAATCGAAAAGAGAGAAGATTCAGAAGAAGTCGATTTTTCCAGAAGCTCAGAAACCCCAAAATTGAAAGGTAACGATGATTCAGAAGACGTCACTAGTTTACGAGAACCTCCAGAAGACGTCACGCCTTCAGAAACCCCAAAAACTACAAATTCAAAGAATTGTGGCACTTCTGGAAACCTTGTCACAGTCGATGGAGTGACTATTTTCAACTGCGAAGATTCTGAAGACGTCAC</canonical>
            <polymorphic>CGGATTATGAAGAAGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGARGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAATCCAGAAGAAACGATAATTCAGAAGATGTACCAGACTCTGGAGAGACTGCGGAAGACGTCACACCTTCAAGAAGTTCCAAAAATCCGAAAATCGAAAAGAGAGAAGATTCAGAAGAAGTCGATTTTTCCAGAAGCTCAGAAACCCCAAAATTGAAAGGTAACGATGATTCAGAAGACGTCACTAGTTTACGAGAACCTCCAGAAGACGTCACGCCTTCAGAAACCCCAAAAACTACAAATTCAAAGAATTGTGGCACTTCTGGAAACCTTGTCACAGTCGATGGAGTGACTATTTTCAACTGCGAAGATTCTGAAGACGTCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTTCAAAATCCAGAAGAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTCGGAGTTTTAAGGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAAT</canonical_amplicon>
		<polymorphic_amplicon>AACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGARGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30350</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>172080</contig_pos>
        <strand>+</strand>
        <context>TTGTAGARGA[A/C]GTCACGCTGY</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGA</left_flank>
        <right_flank>GTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATGAAGAAGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAATCCAGAAGAAACGATAATTCAGAAGATGTACCAGACTCTGGAGAGACTGCGGAAGACGTCACACCTTCAAGAAGTTCCAAAAATCCGAAAATCGAAAAGAGAGAAGATTCAGAAGAAGTCGATTTTTCCAGAAGCTCAGAAACCCCAAAATTGAAAGGTAACGATGATTCAGAAGACGTCACTAGTTTACGAGAACCTCCAGAAGACGTCACGCCTTCAGAAACCCCAAAAACTACAAATTCAAAGAATTGTGGCACTTCTGGAAACCTTGTCACAGTCGATGGAGTGACTATTTTCAACTGCGAAGATTCTGAAGACGTCACGAA</canonical>
            <polymorphic>ATTATGAAGAAGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAMGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAATCCAGAAGAAACGATAATTCAGAAGATGTACCAGACTCTGGAGAGACTGCGGAAGACGTCACACCTTCAAGAAGTTCCAAAAATCCGAAAATCGAAAAGAGAGAAGATTCAGAAGAAGTCGATTTTTCCAGAAGCTCAGAAACCCCAAAATTGAAAGGTAACGATGATTCAGAAGACGTCACTAGTTTACGAGAACCTCCAGAAGACGTCACGCCTTCAGAAACCCCAAAAACTACAAATTCAAAGAATTGTGGCACTTCTGGAAACCTTGTCACAGTCGATGGAGTGACTATTTTCAACTGCGAAGATTCTGAAGACGTCACGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTTCAAAATCCAGAAGAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTCGGAGTTTTAAGGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAAT</canonical_amplicon>
		<polymorphic_amplicon>AACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAMGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30351</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>172090</contig_pos>
        <strand>+</strand>
        <context>MGTCACGCTG[C/T]CTGGAAWTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTG</left_flank>
        <right_flank>CTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAATCCAGAAGAAACGATAATTCAGAAGATGTACCAGACTCTGGAGAGACTGCGGAAGACGTCACACCTTCAAGAAGTTCCAAAAATCCGAAAATCGAAAAGAGAGAAGATTCAGAAGAAGTCGATTTTTCCAGAAGCTCAGAAACCCCAAAATTGAAAGGTAACGATGATTCAGAAGACGTCACTAGTTTACGAGAACCTCCAGAAGACGTCACGCCTTCAGAAACCCCAAAAACTACAAATTCAAAGAATTGTGGCACTTCTGGAAACCTTGTCACAGTCGATGGAGTGACTATTTTCAACTGCGAAGATTCTGAAGACGTCACGAATCCTTCGATT</canonical>
            <polymorphic>AGTGACGCTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGYCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAATCCAGAAGAAACGATAATTCAGAAGATGTACCAGACTCTGGAGAGACTGCGGAAGACGTCACACCTTCAAGAAGTTCCAAAAATCCGAAAATCGAAAAGAGAGAAGATTCAGAAGAAGTCGATTTTTCCAGAAGCTCAGAAACCCCAAAATTGAAAGGTAACGATGATTCAGAAGACGTCACTAGTTTACGAGAACCTCCAGAAGACGTCACGCCTTCAGAAACCCCAAAAACTACAAATTCAAAGAATTGTGGCACTTCTGGAAACCTTGTCACAGTCGATGGAGTGACTATTTTCAACTGCGAAGATTCTGAAGACGTCACGAATCCTTCGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>105 96 71 61 61 60 60 54 51 45 43 36 36 32 31 30 30 25 18 18 15 11 11</canonical_bands>
                <polymorphic_bands>105 96 90 71 61 61 60 54 51 45 43 36 36 32 31 30 25 18 18 15 11 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTTCAAAATCCAGAAGAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTCGGAGTTTTAAGGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAAT</canonical_amplicon>
		<polymorphic_amplicon>AACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGYCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30352</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>172097</contig_pos>
        <strand>+</strand>
        <context>CTGYCTGGAA[A/T]TTTGAGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAA</left_flank>
        <right_flank>TTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAATCCAGAAGAAACGATAATTCAGAAGATGTACCAGACTCTGGAGAGACTGCGGAAGACGTCACACCTTCAAGAAGTTCCAAAAATCCGAAAATCGAAAAGAGAGAAGATTCAGAAGAAGTCGATTTTTCCAGAAGCTCAGAAACCCCAAAATTGAAAGGTAACGATGATTCAGAAGACGTCACTAGTTTACGAGAACCTCCAGAAGACGTCACGCCTTCAGAAACCCCAAAAACTACAAATTCAAAGAATTGTGGCACTTCTGGAAACCTTGTCACAGTCGATGGAGTGACTATTTTCAACTGCGAAGATTCTGAAGACGTCACGAATCCTTCGATTCAAAATC</canonical>
            <polymorphic>CTGCCTGCAAATTCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAWTTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAATCCAGAAGAAACGATAATTCAGAAGATGTACCAGACTCTGGAGAGACTGCGGAAGACGTCACACCTTCAAGAAGTTCCAAAAATCCGAAAATCGAAAAGAGAGAAGATTCAGAAGAAGTCGATTTTTCCAGAAGCTCAGAAACCCCAAAATTGAAAGGTAACGATGATTCAGAAGACGTCACTAGTTTACGAGAACCTCCAGAAGACGTCACGCCTTCAGAAACCCCAAAAACTACAAATTCAAAGAATTGTGGCACTTCTGGAAACCTTGTCACAGTCGATGGAGTGACTATTTTCAACTGCGAAGATTCTGAAGACGTCACGAATCCTTCGATTCAAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>328 155 124 106 87 74 60 17 16 16 9 8</canonical_bands>
                <polymorphic_bands>328 215 124 106 87 74 17 16 16 9 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>138 133 106 97 89 87 80 74 50 24 20 17 17 16 16 10 9 9 8</canonical_bands>
                <polymorphic_bands>148 133 106 97 89 87 80 74 50 24 20 17 17 16 16 9 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTTCAAAATCCAGAAGAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTCGGAGTTTTAAGGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAAT</canonical_amplicon>
		<polymorphic_amplicon>AACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAWTTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30353</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>172109</contig_pos>
        <strand>+</strand>
        <context>TTGAGAAAAT[C/T]GGATTTCAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAAT</left_flank>
        <right_flank>GGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAATCCAGAAGAAACGATAATTCAGAAGATGTACCAGACTCTGGAGAGACTGCGGAAGACGTCACACCTTCAAGAAGTTCCAAAAATCCGAAAATCGAAAAGAGAGAAGATTCAGAAGAAGTCGATTTTTCCAGAAGCTCAGAAACCCCAAAATTGAAAGGTAACGATGATTCAGAAGACGTCACTAGTTTACGAGAACCTCCAGAAGACGTCACGCCTTCAGAAACCCCAAAAACTACAAATTCAAAGAATTGTGGCACTTCTGGAAACCTTGTCACAGTCGATGGAGTGACTATTTTCAACTGCGAAGATTCTGAAGACGTCACGAATCCTTCGATTCAAAATCTTGAAATTTCAA</canonical>
            <polymorphic>TCAGAAGACGTCAGGAGAATTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATYGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAATCCAGAAGAAACGATAATTCAGAAGATGTACCAGACTCTGGAGAGACTGCGGAAGACGTCACACCTTCAAGAAGTTCCAAAAATCCGAAAATCGAAAAGAGAGAAGATTCAGAAGAAGTCGATTTTTCCAGAAGCTCAGAAACCCCAAAATTGAAAGGTAACGATGATTCAGAAGACGTCACTAGTTTACGAGAACCTCCAGAAGACGTCACGCCTTCAGAAACCCCAAAAACTACAAATTCAAAGAATTGTGGCACTTCTGGAAACCTTGTCACAGTCGATGGAGTGACTATTTTCAACTGCGAAGATTCTGAAGACGTCACGAATCCTTCGATTCAAAATCTTGAAATTTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>138 133 106 101 89 87 80 74 50 24 17 17 17 16 16 10 9 8 8</canonical_bands>
                <polymorphic_bands>138 133 106 101 89 87 80 74 60 24 17 17 17 16 16 9 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTTCAAAATCCAGAAGAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTCGGAGTTTTAAGGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAAT</canonical_amplicon>
		<polymorphic_amplicon>AACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATYGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30354</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>172128</contig_pos>
        <strand>+</strand>
        <context>GAAAACTTGA[A/G]GATTCAGAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGA</left_flank>
        <right_flank>GATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAATCCAGAAGAAACGATAATTCAGAAGATGTACCAGACTCTGGAGAGACTGCGGAAGACGTCACACCTTCAAGAAGTTCCAAAAATCCGAAAATCGAAAAGAGAGAAGATTCAGAAGAAGTCGATTTTTCCAGAAGCTCAGAAACCCCAAAATTGAAAGGTAACGATGATTCAGAAGACGTCACTAGTTTACGAGAACCTCCAGAAGACGTCACGCCTTCAGAAACCCCAAAAACTACAAATTCAAAGAATTGTGGCACTTCTGGAAACCTTGTCACAGTCGATGGAGTGACTATTTTCAACTGCGAAGATTCTGAAGACGTCACGAATCCTTCGATTCAAAATCTTGAAATTTCAAAATTCCTTTCTGAAATCAA</canonical>
            <polymorphic>TTATGGAAAAAAGAGGAGATAAAATTGAAAAGATTCTGGAAGGAATAAGCGAAGAAGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGARGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAATCCAGAAGAAACGATAATTCAGAAGATGTACCAGACTCTGGAGAGACTGCGGAAGACGTCACACCTTCAAGAAGTTCCAAAAATCCGAAAATCGAAAAGAGAGAAGATTCAGAAGAAGTCGATTTTTCCAGAAGCTCAGAAACCCCAAAATTGAAAGGTAACGATGATTCAGAAGACGTCACTAGTTTACGAGAACCTCCAGAAGACGTCACGCCTTCAGAAACCCCAAAAACTACAAATTCAAAGAATTGTGGCACTTCTGGAAACCTTGTCACAGTCGATGGAGTGACTATTTTCAACTGCGAAGATTCTGAAGACGTCACGAATCCTTCGATTCAAAATCTTGAAATTTCAAAATTCCTTTCTGAAATCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTTCAAAATCCAGAAGAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTCGGAGTTTTAAGGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAAT</canonical_amplicon>
		<polymorphic_amplicon>AACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGARGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30355</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>172183</contig_pos>
        <strand>+</strand>
        <context>TAACGACGAA[A/G]AGAATGATGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAA</left_flank>
        <right_flank>AGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAATCCAGAAGAAACGATAATTCAGAAGATGTACCAGACTCTGGAGAGACTGCGGAAGACGTCACACCTTCAAGAAGTTCCAAAAATCCGAAAATCGAAAAGAGAGAAGATTCAGAAGAAGTCGATTTTTCCAGAAGCTCAGAAACCCCAAAATTGAAAGGTAACGATGATTCAGAAGACGTCACTAGTTTACGAGAACCTCCAGAAGACGTCACGCCTTCAGAAACCCCAAAAACTACAAATTCAAAGAATTGTGGCACTTCTGGAAACCTTGTCACAGTCGATGGAGTGACTATTTTCAACTGCGAAGATTCTGAAGACGTCACGAATCCTTCGATTCAAAATCTTGAAATTTCAAAATTCCTTTCTGAAATCAACGAAACCGTCCTGGAAGATTCTTCAAAAAATCATTTCGATGAAGCCCTCAATTTC</canonical>
            <polymorphic>AGGAGAAAAGGAAGGTTCAGCATATCCAGAAGACGTCAGGAACTCAAAATTCAGAGGAAACGATGATTCAGGAGACGTCACTGGTTCTGGAGCAGCTCCGGAAGATGCAACGCTGTCAGGGAATTTCAAAAACCTGGAATTCGGAAGACTTAAAAATTCAGAAGACGTCATATCTACGAAAATCCTAAAAAATCCAGAGATCAACAGAAGAGGAGGTTCAGGAGACGTGACGCCGTCAGGAAATTTCAAAAACCCGAAATTCGACAAAAACAATAATTCAGAAGGTTCTGGAGAACTTTTAGAAGACGTAAAGCTGTCAGAAACCCTCAAAACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAARAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAATCCAGAAGAAACGATAATTCAGAAGATGTACCAGACTCTGGAGAGACTGCGGAAGACGTCACACCTTCAAGAAGTTCCAAAAATCCGAAAATCGAAAAGAGAGAAGATTCAGAAGAAGTCGATTTTTCCAGAAGCTCAGAAACCCCAAAATTGAAAGGTAACGATGATTCAGAAGACGTCACTAGTTTACGAGAACCTCCAGAAGACGTCACGCCTTCAGAAACCCCAAAAACTACAAATTCAAAGAATTGTGGCACTTCTGGAAACCTTGTCACAGTCGATGGAGTGACTATTTTCAACTGCGAAGATTCTGAAGACGTCACGAATCCTTCGATTCAAAATCTTGAAATTTCAAAATTCCTTTCTGAAATCAACGAAACCGTCCTGGAAGATTCTTCAAAAAATCATTTCGATGAAGCCCTCAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTTCAAAATCCAGAAGAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTCGGAGTTTTAAGGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAAGAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAAT</canonical_amplicon>
		<polymorphic_amplicon>AACTTCAAAATCCAGAAGAAACGAGGATTCAGAAGACGTCACTGATTCTGGAGAAGTTGTAGAAGAAGTCACGCTGTCTGGAAATTTGAGAAAATTGGATTTCAGAAAACTTGAAGATTCAGAAGTCGTCACGGCTTCTGGAAATTCCAAAATTTCAAATAACGACGAARAGAATGATGTAAAAGTATCTGAAGAAGCTTTAGAAGATGTCACGCCATCAGAAAACCTTAAAACTCCGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30358</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>199117</contig_pos>
        <strand>+</strand>
        <context>GTGGAACAGA[A/G]TTTTTTTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTGAACTGATGTATTTCATGTGTGGAGGGAAAACGAGAAGTGGAACAGA</left_flank>
        <right_flank>TTTTTTTGAAGAGAAGAAGTGACGTGGCATGAGAAAAAATCGAAAATTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCTCTATTTTTGTTTAATATACTCTGAAATTTTCAGACAATTTGAAAAAGTTCGAAGTACTTTTGTAGGGCCTCAAAAATGACTATTTTTCCATGGTGTCTCTGAAAGAATATTTCTAGTCAACAATTTTTCAGATTAGTACAGTTTCTCTGCGTCTCCCAATTTGTTCTAAAAACCAAATCCTTTATAATACATGTGTATACAAATATTCTGAAGATGTGCTTCTTCTTCTCCTCAAGAGAGAAAAAAGTGGTTGGGATTCGTTCCGTTCTTCAGTGCCTCTTGGCACCCCCTCTCCTCTTTTTCTCCCCTTCCAGTTGAGCCCCATATGATGATTTATGGGTTATGCACAGTAGTTTGTAGAAGAAGAAGAAGAAGGGACGAATGAATTCGGCGAAAAAAGCCTCTCTTCCGATTTAGGTCCTGATTTCCGGTCGGGAAGAGAGAAGTGAACTGATGTATTTCATGTGTGGAGGGAAAACGAGAAGTGGAACAGATTTTTTTTGAAGAGAAGAAGTGACGTGGCATGAGAAAAAATCGAAAATTCAGGTGGACCTGAAAAAAAACAGGGATCAGGTTTCTAGCTTGGAATCGAGATCTAGGACTACAGTTAGAGCCGAATGCTCCAGAAGATATGTGAACTTTGAGCTAAATTATCTCGTCTCCTTCAAAAGATATCAAAAATTTGTCAACTAATAAAATGTTTATCATAGAATTATCAACATTTAGTCAATTTTCAATTTTTTGATATCTTCCTTAGGAGGCGAGATAATTGAGCTCAAAGTTGACGGTTAAGGTGAGCTTCTATTTAAGAAGATATGCTATCTGTTCTTTGAGCTCAATTATCTTGATTTCTATCAGAGATATCAAAAATATGTCGACTGATGAAATATTTTTCATAAAATTGTCAACATTTTATCAATTGACAAATTTTGATATCCCTTACAGTAATCAAGTTAATTGAGCTCGAAGTAAAAGTATGGGGTGGCGGCAGTTGT</canonical>
            <polymorphic>AAGCTCTATTTTTGTTTAATATACTCTGAAATTTTCAGACAATTTGAAAAAGTTCGAAGTACTTTTGTAGGGCCTCAAAAATGACTATTTTTCCATGGTGTCTCTGAAAGAATATTTCTAGTCAACAATTTTTCAGATTAGTACAGTTTCTCTGCGTCTCCCAATTTGTTCTAAAAACCAAATCCTTTATAATACATGTGTATACAAATATTCTGAAGATGTGCTTCTTCTTCTCCTCAAGAGAGAAAAAAGTGGTTGGGATTCGTTCCGTTCTTCAGTGCCTCTTGGCACCCCCTCTCCTCTTTTTCTCCCCTTCCAGTTGAGCCCCATATGATGATTTATGGGTTATGCACAGTAGTTTGTAGAAGAAGAAGAAGAAGGGACGAATGAATTCGGCGAAAAAAGCCTCTCTTCCGATTTAGGTCCTGATTTCCGGTCGGGAAGAGAGAAGTGAACTGATGTATTTCATGTGTGGAGGGAAAACGAGAAGTGGAACAGARTTTTTTTGAAGAGAAGAAGTGACGTGGCATGAGAAAAAATCGAAAATTCAGGTGGACCTGAAAAAAAACAGGGATCAGGTTTCTAGCTTGGAATCGAGATCTAGGACTACAGTTAGAGCCGAATGCTCCAGAAGATATGTGAACTTTGAGCTAAATTATCTCGTCTCCTTCAAAAGATATCAAAAATTTGTCAACTAATAAAATGTTTATCATAGAATTATCAACATTTAGTCAATTTTCAATTTTTTGATATCTTCCTTAGGAGGCGAGATAATTGAGCTCAAAGTTGACGGTTAAGGTGAGCTTCTATTTAAGAAGATATGCTATCTGTTCTTTGAGCTCAATTATCTTGATTTCTATCAGAGATATCAAAAATATGTCGACTGATGAAATATTTTTCATAAAATTGTCAACATTTTATCAATTGACAAATTTTGATATCCCTTACAGTAATCAAGTTAATTGAGCTCGAAGTAAAAGTATGGGGTGGCGGCAGTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTATGGGTTATGCACAGTAG</pcr_primer_p1>
		<pcr_primer_p2>TAGAAACCTGATCCCTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATTTATGGGTTATGCACAGTAGTTTGTAGAAGAAGAAGAAGAAGGGACGAATGAATTCGGCGAAAAAAGCCTCTCTTCCGATTTAGGTCCTGATTTCCGGTCGGGAAGAGAGAAGTGAACTGATGTATTTCATGTGTGGAGGGAAAACGAGAAGTGGAACAGATTTTTTTTGAAGAGAAGAAGTGACGTGGCATGAGAAAAAATCGAAAATTCAGGTGGACCTGAAAAAAAACAGGGATCAGGTTTCTA</canonical_amplicon>
		<polymorphic_amplicon>GATTTATGGGTTATGCACAGTAGTTTGTAGAAGAAGAAGAAGAAGGGACGAATGAATTCGGCGAAAAAAGCCTCTCTTCCGATTTAGGTCCTGATTTCCGGTCGGGAAGAGAGAAGTGAACTGATGTATTTCATGTGTGGAGGGAAAACGAGAAGTGGAACAGARTTTTTTTGAAGAGAAGAAGTGACGTGGCATGAGAAAAAATCGAAAATTCAGGTGGACCTGAAAAAAAACAGGGATCAGGTTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30359</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>210958</contig_pos>
        <strand></strand>
        <context>gctgattcta[T/A]tggtatagtt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAATTAAACATGAGTATAGTCATTCGAAAGCTCTTTTTTAGCTGATTCTA</left_flank>
        <right_flank>TGGTATAGTTTTAACACAATTCTGAACAAAAAAAAAGAGTTACGGTAGTT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAACGTAAAAAGGTAACACAAAAAGAGGCGCTTTTTGGTTTAGACGCTTGGCTTCTACCCACTTCTAAAAACAACATTTTTCCTTTTATACTACTTTTCTACAAAAAAGTTTTGCATGTTTTTCTAGAACTTTCTGGGGGAATGGGGATTTCAAGAACTCTAGGATTCGAAAAAAATGCTATTTATTCTGCTTACAGTAACCTTTTTTGAAATTATGGGTCAGTCTATGTTATTTGCGTCTTTGAACATTCTTTTTTGGGTTACTGTATTTTTCCAATGATGACCCTTTTTTCTGAAATGTGGCATGATTATATTCATTCGAAAGCTCTTTTTGAGTTTATTCTAATGATATAATTGACATAAGATTGTGAGCAAAACTGAGCAAGTTACAGTAGTTTAAAGTTTTCTTGTCATTAGAGCGCATTTTATAAAGAACAAATTTAAAAAAATTAAACATGAGTATAGTCATTCGAAAGCTCTTTTTTAGCTGATTCTATTGGTATAGTTTTAACACAATTCTGAACAAAAAAAAAGAGTTACGGTAGTTTAAAGTTTCCGTTGTAACATATTTTCATTAGAGCGCATTTTCTGAAAATTTTCAAATTGAGCCATGATTATACTCATTTAAAAGCTCTTTTCTAGCCAATTTTTATGATATAAACTTTTCACAAAATTCTGAGCAAAACTGAGAGAGTTACAGTACTATGATGTTCTTATTAACATTAGAGCGCATTTGCTCCCAAAATCTCCCAAATGTTCTGAAAAATAGTTGCTAAAATTTTCTTTTCTTTGAAAATGTTATGCTTTTGACAGCTATGATGTTGGTTAACGTATTTCAAACTTTTTGTTGCACTTTTAAACTTTTGTCTTCGGATTACTGTAGTTTTCCAGACGGGTCCCTTTTGTACTCGTTTGAAAACTCTTTTTAAGCTGAATCTGATGGTATAGTTTTAATAAGAATCTGAGCAAAACTGCCGAAGTTACAGTAGCTTGAAGT</canonical>
            <polymorphic>TTTCAACGTAAAAAGGTAACACAAAAAGAGGCGCTTTTTGGTTTAGACGCTTGGCTTCTACCCACTTCTAAAAACAACATTTTTCCTTTTATACTACTTTTCTACAAAAAAGTTTTGCATGTTTTTCTAGAACTTTCTGGGGGAATGGGGATTTCAAGAACTCTAGGATTCGAAAAAAATGCTATTTATTCTGCTTACAGTAACCTTTTTTGAAATTATGGGTCAGTCTATGTTATTTGCGTCTTTGAACATTCTTTTTTGGGTTACTGTATTTTTCCAATGATGACCCTTTTTTCTGAAATGTGGCATGATTATATTCATTCGAAAGCTCTTTTTGAGTTTATTCTAATGATATAATTGACATAAGATTGTGAGCAAAACTGAGCAAGTTACAGTAGTTTAAAGTTTTCTTGTCATTAGAGCGCATTTTATAAAGAACAAATTTAAAAAAATTAAACATGAGTATAGTCATTCGAAAGCTCTTTTTTAGCTGATTCTAWTGGTATAGTTTTAACACAATTCTGAACAAAAAAAAAGAGTTACGGTAGTTTAAAGTTTCCGTTGTAACATATTTTCATTAGAGCGCATTTTCTGAAAATTTTCAAATTGAGCCATGATTATACTCATTTAAAAGCTCTTTTCTAGCCAATTTTTATGATATAAACTTTTCACAAAATTCTGAGCAAAACTGAGAGAGTTACAGTACTATGATGTTCTTATTAACATTAGAGCGCATTTGCTCCCAAAATCTCCCAAATGTTCTGAAAAATAGTTGCTAAAATTTTCTTTTCTTTGAAAATGTTATGCTTTTGACAGCTATGATGTTGGTTAACGTATTTCAAACTTTTTGTTGCACTTTTAAACTTTTGTCTTCGGATTACTGTAGTTTTCCAGACGGGTCCCTTTTGTACTCGTTTGAAAACTCTTTTTAAGCTGAATCTGATGGTATAGTTTTAATAAGAATCTGAGCAAAACTGCCGAAGTTACAGTAGCTTGAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAGCGCATTTTATAAAGAACA</pcr_primer_p1>
		<pcr_primer_p2>TCAGAACATTTGGGAGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>348</pcr_amplicon_size>
		<canonical_amplicon>TAGAGCGCATTTTATAAAGAACAAATTTAAAAAAATTAAACATGAGTATAGTCATTCGAAAGCTCTTTTTTAGCTGATTCTATTGGTATAGTTTTAACACAATTCTGAACAAAAAAAAAGAGTTACGGTAGTTTAAAGTTTCCGTTGTAACATATTTTCATTAGAGCGCATTTTCTGAAAATTTTCAAATTGAGCCATGATTATACTCATTTAAAAGCTCTTTTCTAGCCAATTTTTATGATATAAACTTTTCACAAAATTCTGAGCAAAACTGAGAGAGTTACAGTACTATGATGTTCTTATTAACATTAGAGCGCATTTGCTCCCAAAATCTCCCAAATGTTCTGA</canonical_amplicon>
		<polymorphic_amplicon>TAGAGCGCATTTTATAAAGAACAAATTTAAAAAAATTAAACATGAGTATAGTCATTCGAAAGCTCTTTTTTAGCTGATTCTAWTGGTATAGTTTTAACACAATTCTGAACAAAAAAAAAGAGTTACGGTAGTTTAAAGTTTCCGTTGTAACATATTTTCATTAGAGCGCATTTTCTGAAAATTTTCAAATTGAGCCATGATTATACTCATTTAAAAGCTCTTTTCTAGCCAATTTTTATGATATAAACTTTTCACAAAATTCTGAGCAAAACTGAGAGAGTTACAGTACTATGATGTTCTTATTAACATTAGAGCGCATTTGCTCCCAAAATCTCCCAAATGTTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30360</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>211032</contig_pos>
        <strand></strand>
        <context>gtaacatatt[T/A]tcattagagc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GAACAAAAAAAAAGAGTTACGGTAGTTTAAAGTTTCCGTTGTAACATATT</left_flank>
        <right_flank>TCATTAGAGCGCATTTTCTGAAAATTTTCAAATTGAGCCATGATTATACT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACATTTTTCCTTTTATACTACTTTTCTACAAAAAAGTTTTGCATGTTTTTCTAGAACTTTCTGGGGGAATGGGGATTTCAAGAACTCTAGGATTCGAAAAAAATGCTATTTATTCTGCTTACAGTAACCTTTTTTGAAATTATGGGTCAGTCTATGTTATTTGCGTCTTTGAACATTCTTTTTTGGGTTACTGTATTTTTCCAATGATGACCCTTTTTTCTGAAATGTGGCATGATTATATTCATTCGAAAGCTCTTTTTGAGTTTATTCTAATGATATAATTGACATAAGATTGTGAGCAAAACTGAGCAAGTTACAGTAGTTTAAAGTTTTCTTGTCATTAGAGCGCATTTTATAAAGAACAAATTTAAAAAAATTAAACATGAGTATAGTCATTCGAAAGCTCTTTTTTAGCTGATTCTATTGGTATAGTTTTAACACAATTCTGAACAAAAAAAAAGAGTTACGGTAGTTTAAAGTTTCCGTTGTAACATATTTTCATTAGAGCGCATTTTCTGAAAATTTTCAAATTGAGCCATGATTATACTCATTTAAAAGCTCTTTTCTAGCCAATTTTTATGATATAAACTTTTCACAAAATTCTGAGCAAAACTGAGAGAGTTACAGTACTATGATGTTCTTATTAACATTAGAGCGCATTTGCTCCCAAAATCTCCCAAATGTTCTGAAAAATAGTTGCTAAAATTTTCTTTTCTTTGAAAATGTTATGCTTTTGACAGCTATGATGTTGGTTAACGTATTTCAAACTTTTTGTTGCACTTTTAAACTTTTGTCTTCGGATTACTGTAGTTTTCCAGACGGGTCCCTTTTGTACTCGTTTGAAAACTCTTTTTAAGCTGAATCTGATGGTATAGTTTTAATAAGAATCTGAGCAAAACTGCCGAAGTTACAGTAGCTTGAAGTTTCTGTTTTCATAAATTATCATTAGAGCGAATTTTCTTCCAAAAACTAAATTCGCAATGATTATACTCATTGGA</canonical>
            <polymorphic>CAACATTTTTCCTTTTATACTACTTTTCTACAAAAAAGTTTTGCATGTTTTTCTAGAACTTTCTGGGGGAATGGGGATTTCAAGAACTCTAGGATTCGAAAAAAATGCTATTTATTCTGCTTACAGTAACCTTTTTTGAAATTATGGGTCAGTCTATGTTATTTGCGTCTTTGAACATTCTTTTTTGGGTTACTGTATTTTTCCAATGATGACCCTTTTTTCTGAAATGTGGCATGATTATATTCATTCGAAAGCTCTTTTTGAGTTTATTCTAATGATATAATTGACATAAGATTGTGAGCAAAACTGAGCAAGTTACAGTAGTTTAAAGTTTTCTTGTCATTAGAGCGCATTTTATAAAGAACAAATTTAAAAAAATTAAACATGAGTATAGTCATTCGAAAGCTCTTTTTTAGCTGATTCTATTGGTATAGTTTTAACACAATTCTGAACAAAAAAAAAGAGTTACGGTAGTTTAAAGTTTCCGTTGTAACATATTWTCATTAGAGCGCATTTTCTGAAAATTTTCAAATTGAGCCATGATTATACTCATTTAAAAGCTCTTTTCTAGCCAATTTTTATGATATAAACTTTTCACAAAATTCTGAGCAAAACTGAGAGAGTTACAGTACTATGATGTTCTTATTAACATTAGAGCGCATTTGCTCCCAAAATCTCCCAAATGTTCTGAAAAATAGTTGCTAAAATTTTCTTTTCTTTGAAAATGTTATGCTTTTGACAGCTATGATGTTGGTTAACGTATTTCAAACTTTTTGTTGCACTTTTAAACTTTTGTCTTCGGATTACTGTAGTTTTCCAGACGGGTCCCTTTTGTACTCGTTTGAAAACTCTTTTTAAGCTGAATCTGATGGTATAGTTTTAATAAGAATCTGAGCAAAACTGCCGAAGTTACAGTAGCTTGAAGTTTCTGTTTTCATAAATTATCATTAGAGCGAATTTTCTTCCAAAAACTAAATTCGCAATGATTATACTCATTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAGCGCATTTTATAAAGAACA</pcr_primer_p1>
		<pcr_primer_p2>TCAGAACATTTGGGAGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>348</pcr_amplicon_size>
		<canonical_amplicon>TAGAGCGCATTTTATAAAGAACAAATTTAAAAAAATTAAACATGAGTATAGTCATTCGAAAGCTCTTTTTTAGCTGATTCTATTGGTATAGTTTTAACACAATTCTGAACAAAAAAAAAGAGTTACGGTAGTTTAAAGTTTCCGTTGTAACATATTTTCATTAGAGCGCATTTTCTGAAAATTTTCAAATTGAGCCATGATTATACTCATTTAAAAGCTCTTTTCTAGCCAATTTTTATGATATAAACTTTTCACAAAATTCTGAGCAAAACTGAGAGAGTTACAGTACTATGATGTTCTTATTAACATTAGAGCGCATTTGCTCCCAAAATCTCCCAAATGTTCTGA</canonical_amplicon>
		<polymorphic_amplicon>TAGAGCGCATTTTATAAAGAACAAATTTAAAAAAATTAAACATGAGTATAGTCATTCGAAAGCTCTTTTTTAGCTGATTCTATTGGTATAGTTTTAACACAATTCTGAACAAAAAAAAAGAGTTACGGTAGTTTAAAGTTTCCGTTGTAACATATTWTCATTAGAGCGCATTTTCTGAAAATTTTCAAATTGAGCCATGATTATACTCATTTAAAAGCTCTTTTCTAGCCAATTTTTATGATATAAACTTTTCACAAAATTCTGAGCAAAACTGAGAGAGTTACAGTACTATGATGTTCTTATTAACATTAGAGCGCATTTGCTCCCAAAATCTCCCAAATGTTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30361</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>211386</contig_pos>
        <strand></strand>
        <context>gaaaactctt[T/C]ttaagctgaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTACTGTAGTTTTCCAGACGGGTCCCTTTTGTACTCGTTTGAAAACTCTT</left_flank>
        <right_flank>TTAAGCTGAATCTGATGGTATAGTTTTAATAAGAATCTGAGCAAAACTGC</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATAAAGAACAAATTTAAAAAAATTAAACATGAGTATAGTCATTCGAAAGCTCTTTTTTAGCTGATTCTATTGGTATAGTTTTAACACAATTCTGAACAAAAAAAAAGAGTTACGGTAGTTTAAAGTTTCCGTTGTAACATATTTTCATTAGAGCGCATTTTCTGAAAATTTTCAAATTGAGCCATGATTATACTCATTTAAAAGCTCTTTTCTAGCCAATTTTTATGATATAAACTTTTCACAAAATTCTGAGCAAAACTGAGAGAGTTACAGTACTATGATGTTCTTATTAACATTAGAGCGCATTTGCTCCCAAAATCTCCCAAATGTTCTGAAAAATAGTTGCTAAAATTTTCTTTTCTTTGAAAATGTTATGCTTTTGACAGCTATGATGTTGGTTAACGTATTTCAAACTTTTTGTTGCACTTTTAAACTTTTGTCTTCGGATTACTGTAGTTTTCCAGACGGGTCCCTTTTGTACTCGTTTGAAAACTCTTTTTAAGCTGAATCTGATGGTATAGTTTTAATAAGAATCTGAGCAAAACTGCCGAAGTTACAGTAGCTTGAAGTTTCTGTTTTCATAAATTATCATTAGAGCGAATTTTCTTCCAAAAACTAAATTCGCAATGATTATACTCATTGGAAAGCTCTTTTTTAAGTTTAATCTGATGATACATGTTTTATAAAATTCTGAACAATTTTTAGGGAGTTACGGTACTTTTACCATAGGATTACTGTAGTTTTTCAAAAAAAGAAAGTTAGAAAAAATTCAGCCATTATTACTCATTGTAAAGCTCCTTTTGAGCTGAATCCAATTATATAAATATTCGCTTATCGATTTTTAGGCAAAAGTAAAAAGTTACTGTAGTTTTCCACTCGGGACACTTTTCGCTCGAAATATGCCATGATAATACTTATTTCAAAGCTTATTTTGAGTTAAATCTAATTATTTATATTTTAAAATTCTGAACAAAATTTAGGGAGTTACAGACATTTTC</canonical>
            <polymorphic>TTATAAAGAACAAATTTAAAAAAATTAAACATGAGTATAGTCATTCGAAAGCTCTTTTTTAGCTGATTCTATTGGTATAGTTTTAACACAATTCTGAACAAAAAAAAAGAGTTACGGTAGTTTAAAGTTTCCGTTGTAACATATTTTCATTAGAGCGCATTTTCTGAAAATTTTCAAATTGAGCCATGATTATACTCATTTAAAAGCTCTTTTCTAGCCAATTTTTATGATATAAACTTTTCACAAAATTCTGAGCAAAACTGAGAGAGTTACAGTACTATGATGTTCTTATTAACATTAGAGCGCATTTGCTCCCAAAATCTCCCAAATGTTCTGAAAAATAGTTGCTAAAATTTTCTTTTCTTTGAAAATGTTATGCTTTTGACAGCTATGATGTTGGTTAACGTATTTCAAACTTTTTGTTGCACTTTTAAACTTTTGTCTTCGGATTACTGTAGTTTTCCAGACGGGTCCCTTTTGTACTCGTTTGAAAACTCTTYTTAAGCTGAATCTGATGGTATAGTTTTAATAAGAATCTGAGCAAAACTGCCGAAGTTACAGTAGCTTGAAGTTTCTGTTTTCATAAATTATCATTAGAGCGAATTTTCTTCCAAAAACTAAATTCGCAATGATTATACTCATTGGAAAGCTCTTTTTTAAGTTTAATCTGATGATACATGTTTTATAAAATTCTGAACAATTTTTAGGGAGTTACGGTACTTTTACCATAGGATTACTGTAGTTTTTCAAAAAAAGAAAGTTAGAAAAAATTCAGCCATTATTACTCATTGTAAAGCTCCTTTTGAGCTGAATCCAATTATATAAATATTCGCTTATCGATTTTTAGGCAAAAGTAAAAAGTTACTGTAGTTTTCCACTCGGGACACTTTTCGCTCGAAATATGCCATGATAATACTTATTTCAAAGCTTATTTTGAGTTAAATCTAATTATTTATATTTTAAAATTCTGAACAAAATTTAGGGAGTTACAGACATTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTATGATGTTGGTTAACGTATT</pcr_primer_p1>
		<pcr_primer_p2>TAATCATTGCGAATTTAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCTATGATGTTGGTTAACGTATTTCAAACTTTTTGTTGCACTTTTAAACTTTTGTCTTCGGATTACTGTAGTTTTCCAGACGGGTCCCTTTTGTACTCGTTTGAAAACTCTTTTTAAGCTGAATCTGATGGTATAGTTTTAATAAGAATCTGAGCAAAACTGCCGAAGTTACAGTAGCTTGAAGTTTCTGTTTTCATAAATTATCATTAGAGCGAATTTTCTTCCAAAAACTAAATTCGCAATGATTA</canonical_amplicon>
		<polymorphic_amplicon>GCTATGATGTTGGTTAACGTATTTCAAACTTTTTGTTGCACTTTTAAACTTTTGTCTTCGGATTACTGTAGTTTTCCAGACGGGTCCCTTTTGTACTCGTTTGAAAACTCTTYTTAAGCTGAATCTGATGGTATAGTTTTAATAAGAATCTGAGCAAAACTGCCGAAGTTACAGTAGCTTGAAGTTTCTGTTTTCATAAATTATCATTAGAGCGAATTTTCTTCCAAAAACTAAATTCGCAATGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30362</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>211406</contig_pos>
        <strand></strand>
        <context>atctgatggt[A/G]tagttwtaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTCCCTTTTGTACTCGTTTGAAAACTCTTTTTAAGCTGAATCTGATGGT</left_flank>
        <right_flank>TAGTTTTAATAAGAATCTGAGCAAAACTGCCGAAGTTACAGTAGCTTGAA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTAAACATGAGTATAGTCATTCGAAAGCTCTTTTTTAGCTGATTCTATTGGTATAGTTTTAACACAATTCTGAACAAAAAAAAAGAGTTACGGTAGTTTAAAGTTTCCGTTGTAACATATTTTCATTAGAGCGCATTTTCTGAAAATTTTCAAATTGAGCCATGATTATACTCATTTAAAAGCTCTTTTCTAGCCAATTTTTATGATATAAACTTTTCACAAAATTCTGAGCAAAACTGAGAGAGTTACAGTACTATGATGTTCTTATTAACATTAGAGCGCATTTGCTCCCAAAATCTCCCAAATGTTCTGAAAAATAGTTGCTAAAATTTTCTTTTCTTTGAAAATGTTATGCTTTTGACAGCTATGATGTTGGTTAACGTATTTCAAACTTTTTGTTGCACTTTTAAACTTTTGTCTTCGGATTACTGTAGTTTTCCAGACGGGTCCCTTTTGTACTCGTTTGAAAACTCTTTTTAAGCTGAATCTGATGGTATAGTTTTAATAAGAATCTGAGCAAAACTGCCGAAGTTACAGTAGCTTGAAGTTTCTGTTTTCATAAATTATCATTAGAGCGAATTTTCTTCCAAAAACTAAATTCGCAATGATTATACTCATTGGAAAGCTCTTTTTTAAGTTTAATCTGATGATACATGTTTTATAAAATTCTGAACAATTTTTAGGGAGTTACGGTACTTTTACCATAGGATTACTGTAGTTTTTCAAAAAAAGAAAGTTAGAAAAAATTCAGCCATTATTACTCATTGTAAAGCTCCTTTTGAGCTGAATCCAATTATATAAATATTCGCTTATCGATTTTTAGGCAAAAGTAAAAAGTTACTGTAGTTTTCCACTCGGGACACTTTTCGCTCGAAATATGCCATGATAATACTTATTTCAAAGCTTATTTTGAGTTAAATCTAATTATTTATATTTTAAAATTCTGAACAAAATTTAGGGAGTTACAGACATTTTCAAAAAAATTGGCTTTGATTT</canonical>
            <polymorphic>AAAATTAAACATGAGTATAGTCATTCGAAAGCTCTTTTTTAGCTGATTCTATTGGTATAGTTTTAACACAATTCTGAACAAAAAAAAAGAGTTACGGTAGTTTAAAGTTTCCGTTGTAACATATTTTCATTAGAGCGCATTTTCTGAAAATTTTCAAATTGAGCCATGATTATACTCATTTAAAAGCTCTTTTCTAGCCAATTTTTATGATATAAACTTTTCACAAAATTCTGAGCAAAACTGAGAGAGTTACAGTACTATGATGTTCTTATTAACATTAGAGCGCATTTGCTCCCAAAATCTCCCAAATGTTCTGAAAAATAGTTGCTAAAATTTTCTTTTCTTTGAAAATGTTATGCTTTTGACAGCTATGATGTTGGTTAACGTATTTCAAACTTTTTGTTGCACTTTTAAACTTTTGTCTTCGGATTACTGTAGTTTTCCAGACGGGTCCCTTTTGTACTCGTTTGAAAACTCTTTTTAAGCTGAATCTGATGGTRTAGTTTTAATAAGAATCTGAGCAAAACTGCCGAAGTTACAGTAGCTTGAAGTTTCTGTTTTCATAAATTATCATTAGAGCGAATTTTCTTCCAAAAACTAAATTCGCAATGATTATACTCATTGGAAAGCTCTTTTTTAAGTTTAATCTGATGATACATGTTTTATAAAATTCTGAACAATTTTTAGGGAGTTACGGTACTTTTACCATAGGATTACTGTAGTTTTTCAAAAAAAGAAAGTTAGAAAAAATTCAGCCATTATTACTCATTGTAAAGCTCCTTTTGAGCTGAATCCAATTATATAAATATTCGCTTATCGATTTTTAGGCAAAAGTAAAAAGTTACTGTAGTTTTCCACTCGGGACACTTTTCGCTCGAAATATGCCATGATAATACTTATTTCAAAGCTTATTTTGAGTTAAATCTAATTATTTATATTTTAAAATTCTGAACAAAATTTAGGGAGTTACAGACATTTTCAAAAAAATTGGCTTTGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTATGATGTTGGTTAACGTATT</pcr_primer_p1>
		<pcr_primer_p2>TAATCATTGCGAATTTAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCTATGATGTTGGTTAACGTATTTCAAACTTTTTGTTGCACTTTTAAACTTTTGTCTTCGGATTACTGTAGTTTTCCAGACGGGTCCCTTTTGTACTCGTTTGAAAACTCTTTTTAAGCTGAATCTGATGGTATAGTTTTAATAAGAATCTGAGCAAAACTGCCGAAGTTACAGTAGCTTGAAGTTTCTGTTTTCATAAATTATCATTAGAGCGAATTTTCTTCCAAAAACTAAATTCGCAATGATTA</canonical_amplicon>
		<polymorphic_amplicon>GCTATGATGTTGGTTAACGTATTTCAAACTTTTTGTTGCACTTTTAAACTTTTGTCTTCGGATTACTGTAGTTTTCCAGACGGGTCCCTTTTGTACTCGTTTGAAAACTCTTTTTAAGCTGAATCTGATGGTRTAGTTTTAATAAGAATCTGAGCAAAACTGCCGAAGTTACAGTAGCTTGAAGTTTCTGTTTTCATAAATTATCATTAGAGCGAATTTTCTTCCAAAAACTAAATTCGCAATGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30363</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>211412</contig_pos>
        <strand></strand>
        <context>tggtrtagtt[T/A]taataagaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTTGTACTCGTTTGAAAACTCTTTTTAAGCTGAATCTGATGGTATAGTT</left_flank>
        <right_flank>TAATAAGAATCTGAGCAAAACTGCCGAAGTTACAGTAGCTTGAAGTTTCT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACATGAGTATAGTCATTCGAAAGCTCTTTTTTAGCTGATTCTATTGGTATAGTTTTAACACAATTCTGAACAAAAAAAAAGAGTTACGGTAGTTTAAAGTTTCCGTTGTAACATATTTTCATTAGAGCGCATTTTCTGAAAATTTTCAAATTGAGCCATGATTATACTCATTTAAAAGCTCTTTTCTAGCCAATTTTTATGATATAAACTTTTCACAAAATTCTGAGCAAAACTGAGAGAGTTACAGTACTATGATGTTCTTATTAACATTAGAGCGCATTTGCTCCCAAAATCTCCCAAATGTTCTGAAAAATAGTTGCTAAAATTTTCTTTTCTTTGAAAATGTTATGCTTTTGACAGCTATGATGTTGGTTAACGTATTTCAAACTTTTTGTTGCACTTTTAAACTTTTGTCTTCGGATTACTGTAGTTTTCCAGACGGGTCCCTTTTGTACTCGTTTGAAAACTCTTTTTAAGCTGAATCTGATGGTATAGTTTTAATAAGAATCTGAGCAAAACTGCCGAAGTTACAGTAGCTTGAAGTTTCTGTTTTCATAAATTATCATTAGAGCGAATTTTCTTCCAAAAACTAAATTCGCAATGATTATACTCATTGGAAAGCTCTTTTTTAAGTTTAATCTGATGATACATGTTTTATAAAATTCTGAACAATTTTTAGGGAGTTACGGTACTTTTACCATAGGATTACTGTAGTTTTTCAAAAAAAGAAAGTTAGAAAAAATTCAGCCATTATTACTCATTGTAAAGCTCCTTTTGAGCTGAATCCAATTATATAAATATTCGCTTATCGATTTTTAGGCAAAAGTAAAAAGTTACTGTAGTTTTCCACTCGGGACACTTTTCGCTCGAAATATGCCATGATAATACTTATTTCAAAGCTTATTTTGAGTTAAATCTAATTATTTATATTTTAAAATTCTGAACAAAATTTAGGGAGTTACAGACATTTTCAAAAAAATTGGCTTTGATTTTTTGTC</canonical>
            <polymorphic>AAACATGAGTATAGTCATTCGAAAGCTCTTTTTTAGCTGATTCTATTGGTATAGTTTTAACACAATTCTGAACAAAAAAAAAGAGTTACGGTAGTTTAAAGTTTCCGTTGTAACATATTTTCATTAGAGCGCATTTTCTGAAAATTTTCAAATTGAGCCATGATTATACTCATTTAAAAGCTCTTTTCTAGCCAATTTTTATGATATAAACTTTTCACAAAATTCTGAGCAAAACTGAGAGAGTTACAGTACTATGATGTTCTTATTAACATTAGAGCGCATTTGCTCCCAAAATCTCCCAAATGTTCTGAAAAATAGTTGCTAAAATTTTCTTTTCTTTGAAAATGTTATGCTTTTGACAGCTATGATGTTGGTTAACGTATTTCAAACTTTTTGTTGCACTTTTAAACTTTTGTCTTCGGATTACTGTAGTTTTCCAGACGGGTCCCTTTTGTACTCGTTTGAAAACTCTTTTTAAGCTGAATCTGATGGTATAGTTWTAATAAGAATCTGAGCAAAACTGCCGAAGTTACAGTAGCTTGAAGTTTCTGTTTTCATAAATTATCATTAGAGCGAATTTTCTTCCAAAAACTAAATTCGCAATGATTATACTCATTGGAAAGCTCTTTTTTAAGTTTAATCTGATGATACATGTTTTATAAAATTCTGAACAATTTTTAGGGAGTTACGGTACTTTTACCATAGGATTACTGTAGTTTTTCAAAAAAAGAAAGTTAGAAAAAATTCAGCCATTATTACTCATTGTAAAGCTCCTTTTGAGCTGAATCCAATTATATAAATATTCGCTTATCGATTTTTAGGCAAAAGTAAAAAGTTACTGTAGTTTTCCACTCGGGACACTTTTCGCTCGAAATATGCCATGATAATACTTATTTCAAAGCTTATTTTGAGTTAAATCTAATTATTTATATTTTAAAATTCTGAACAAAATTTAGGGAGTTACAGACATTTTCAAAAAAATTGGCTTTGATTTTTTGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>276 131 109 92 78 70 66 57 39 30 25 21 6</canonical_bands>
                <polymorphic_bands>276 156 109 92 78 70 66 57 39 30 21 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTATGATGTTGGTTAACGTATT</pcr_primer_p1>
		<pcr_primer_p2>TAATCATTGCGAATTTAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCTATGATGTTGGTTAACGTATTTCAAACTTTTTGTTGCACTTTTAAACTTTTGTCTTCGGATTACTGTAGTTTTCCAGACGGGTCCCTTTTGTACTCGTTTGAAAACTCTTTTTAAGCTGAATCTGATGGTATAGTTTTAATAAGAATCTGAGCAAAACTGCCGAAGTTACAGTAGCTTGAAGTTTCTGTTTTCATAAATTATCATTAGAGCGAATTTTCTTCCAAAAACTAAATTCGCAATGATTA</canonical_amplicon>
		<polymorphic_amplicon>GCTATGATGTTGGTTAACGTATTTCAAACTTTTTGTTGCACTTTTAAACTTTTGTCTTCGGATTACTGTAGTTTTCCAGACGGGTCCCTTTTGTACTCGTTTGAAAACTCTTTTTAAGCTGAATCTGATGGTATAGTTWTAATAAGAATCTGAGCAAAACTGCCGAAGTTACAGTAGCTTGAAGTTTCTGTTTTCATAAATTATCATTAGAGCGAATTTTCTTCCAAAAACTAAATTCGCAATGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30364</snp_id>
        <super_contig>c005301152.Contig1</super_contig>
        <contig_pos>211437</contig_pos>
        <strand></strand>
        <context>gcaaaactgc[C/T]gaagttacag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAGCTGAATCTGATGGTATAGTTTTAATAAGAATCTGAGCAAAACTGC</left_flank>
        <right_flank>GAAGTTACAGTAGCTTGAAGTTTCTGTTTTCATAAATTATCATTAGAGCG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTTTTTTAGCTGATTCTATTGGTATAGTTTTAACACAATTCTGAACAAAAAAAAAGAGTTACGGTAGTTTAAAGTTTCCGTTGTAACATATTTTCATTAGAGCGCATTTTCTGAAAATTTTCAAATTGAGCCATGATTATACTCATTTAAAAGCTCTTTTCTAGCCAATTTTTATGATATAAACTTTTCACAAAATTCTGAGCAAAACTGAGAGAGTTACAGTACTATGATGTTCTTATTAACATTAGAGCGCATTTGCTCCCAAAATCTCCCAAATGTTCTGAAAAATAGTTGCTAAAATTTTCTTTTCTTTGAAAATGTTATGCTTTTGACAGCTATGATGTTGGTTAACGTATTTCAAACTTTTTGTTGCACTTTTAAACTTTTGTCTTCGGATTACTGTAGTTTTCCAGACGGGTCCCTTTTGTACTCGTTTGAAAACTCTTTTTAAGCTGAATCTGATGGTATAGTTTTAATAAGAATCTGAGCAAAACTGCCGAAGTTACAGTAGCTTGAAGTTTCTGTTTTCATAAATTATCATTAGAGCGAATTTTCTTCCAAAAACTAAATTCGCAATGATTATACTCATTGGAAAGCTCTTTTTTAAGTTTAATCTGATGATACATGTTTTATAAAATTCTGAACAATTTTTAGGGAGTTACGGTACTTTTACCATAGGATTACTGTAGTTTTTCAAAAAAAGAAAGTTAGAAAAAATTCAGCCATTATTACTCATTGTAAAGCTCCTTTTGAGCTGAATCCAATTATATAAATATTCGCTTATCGATTTTTAGGCAAAAGTAAAAAGTTACTGTAGTTTTCCACTCGGGACACTTTTCGCTCGAAATATGCCATGATAATACTTATTTCAAAGCTTATTTTGAGTTAAATCTAATTATTTATATTTTAAAATTCTGAACAAAATTTAGGGAGTTACAGACATTTTCAAAAAAATTGGCTTTGATTTTTTGTCTTAATGTCCTTGTCTAGTGTTTTTT</canonical>
            <polymorphic>CTCTTTTTTAGCTGATTCTATTGGTATAGTTTTAACACAATTCTGAACAAAAAAAAAGAGTTACGGTAGTTTAAAGTTTCCGTTGTAACATATTTTCATTAGAGCGCATTTTCTGAAAATTTTCAAATTGAGCCATGATTATACTCATTTAAAAGCTCTTTTCTAGCCAATTTTTATGATATAAACTTTTCACAAAATTCTGAGCAAAACTGAGAGAGTTACAGTACTATGATGTTCTTATTAACATTAGAGCGCATTTGCTCCCAAAATCTCCCAAATGTTCTGAAAAATAGTTGCTAAAATTTTCTTTTCTTTGAAAATGTTATGCTTTTGACAGCTATGATGTTGGTTAACGTATTTCAAACTTTTTGTTGCACTTTTAAACTTTTGTCTTCGGATTACTGTAGTTTTCCAGACGGGTCCCTTTTGTACTCGTTTGAAAACTCTTTTTAAGCTGAATCTGATGGTATAGTTTTAATAAGAATCTGAGCAAAACTGCYGAAGTTACAGTAGCTTGAAGTTTCTGTTTTCATAAATTATCATTAGAGCGAATTTTCTTCCAAAAACTAAATTCGCAATGATTATACTCATTGGAAAGCTCTTTTTTAAGTTTAATCTGATGATACATGTTTTATAAAATTCTGAACAATTTTTAGGGAGTTACGGTACTTTTACCATAGGATTACTGTAGTTTTTCAAAAAAAGAAAGTTAGAAAAAATTCAGCCATTATTACTCATTGTAAAGCTCCTTTTGAGCTGAATCCAATTATATAAATATTCGCTTATCGATTTTTAGGCAAAAGTAAAAAGTTACTGTAGTTTTCCACTCGGGACACTTTTCGCTCGAAATATGCCATGATAATACTTATTTCAAAGCTTATTTTGAGTTAAATCTAATTATTTATATTTTAAAATTCTGAACAAAATTTAGGGAGTTACAGACATTTTCAAAAAAATTGGCTTTGATTTTTTGTCTTAATGTCCTTGTCTAGTGTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTATGATGTTGGTTAACGTATT</pcr_primer_p1>
		<pcr_primer_p2>TAATCATTGCGAATTTAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCTATGATGTTGGTTAACGTATTTCAAACTTTTTGTTGCACTTTTAAACTTTTGTCTTCGGATTACTGTAGTTTTCCAGACGGGTCCCTTTTGTACTCGTTTGAAAACTCTTTTTAAGCTGAATCTGATGGTATAGTTTTAATAAGAATCTGAGCAAAACTGCCGAAGTTACAGTAGCTTGAAGTTTCTGTTTTCATAAATTATCATTAGAGCGAATTTTCTTCCAAAAACTAAATTCGCAATGATTA</canonical_amplicon>
		<polymorphic_amplicon>GCTATGATGTTGGTTAACGTATTTCAAACTTTTTGTTGCACTTTTAAACTTTTGTCTTCGGATTACTGTAGTTTTCCAGACGGGTCCCTTTTGTACTCGTTTGAAAACTCTTTTTAAGCTGAATCTGATGGTATAGTTTTAATAAGAATCTGAGCAAAACTGCYGAAGTTACAGTAGCTTGAAGTTTCTGTTTTCATAAATTATCATTAGAGCGAATTTTCTTCCAAAAACTAAATTCGCAATGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30365</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>91358</contig_pos>
        <strand>+</strand>
        <context>CTGCTGATCM[A/C]TGTACTTTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGTCCTCAGAAGACTTGAACAATGTCTGAAGACAAAGATCTGCTGATCA</left_flank>
        <right_flank>TGTACTTTGACTCAAAAGAGTTCCTTCGTCTAACTGGGCTATGAAAGATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAAAGAGCAGACAAAAATAGAGAGAAAACCCGGGTTGTGTCCCAATTTGTTTCTTTTCAAGTTTTTTCTCCTTATTTTTTTCTTTGTCGCCATGTTTTGATGTATCATGTTTTTGCATTCTCCATTCTTTTTTCGCTGTTTTTTTTAAAGAATCAACACAGAGAAACACAGGAAACAATTTTTGGGAAAAAGACAAGGAAGGTGAATCGAAAATGAAACTGATTCTGTCAAAAAATGTGTGAAATCGGAGAGAAATGGAATCCTCCCAGACATTTGTTTGTTCCAGAAGAGATTAGCCATTTCGTGTAAACTTTCAGAAATAGATGTATGTTTTCTGAAAAATATGAAGGCACGAAGCAAAGAAGAAGAAGAAGAAGGACCAAAAATGAAAGAAAATGAGAAAATGGGTGGTAACGTGAGTAGGGGTTTAGAAAGTTGATGAAGTGAACTGTCCTCAGAAGACTTGAACAATGTCTGAAGACAAAGATCTGCTGATCACTGTACTTTGACTCAAAAGAGTTCCTTCGTCTAACTGGGCTATGAAAGATACAAACTTGCTCTCAAAACCCTAGTAGATAAAGAAAGCCATACAGTAGGAAATCTAGACATCTTCTTCTTCTTCTTATTCATCCGAACCGACCCGCCTACCACTGAATGAAAGTGAATACCAAAAAAAATAGCTTAAGAAATCTCATTGAGTCTGACGACGCCGTCGTTGTGTTCAACGAGCACATCCGCTGTCGATGTGTGATTAGCATACGCGTGGCAGAATGCCTTTTCTTTCTCCTAGAACAGTATGTCACATACCACTCCCAGGGGCTCAATTCCTCATTCTCCGCTATTTTTCTGCTCAAAAGAATGTCAACCAAAAATAACGGGCGGTGTCGGTGAAGAAAAAAAAAACATAACAATGACAAACATGAGCATTTACTGTGATGGAAGATTCCCTCTGTAATCTAACACTTCCGTTCTGTCTTCTCAAATAAAAATTACCACTGT</canonical>
            <polymorphic>GCAAAGAGCAGACAAAAATAGAGAGAAAACCCGGGTTGTGTCCCAATTTGTTTCTTTTCAAGTTTTTTCTCCTTATTTTTTTCTTTGTCGCCATGTTTTGATGTATCATGTTTTTGCATTCTCCATTCTTTTTTCGCTGTTTTTTTTAAAGAATCAACACAGAGAAACACAGGAAACAATTTTTGGGAAAAAGACAAGGAAGGTGAATCGAAAATGAAACTGATTCTGTCAAAAAATGTGTGAAATCGGAGAGAAATGGAATCCTCCCAGACATTTGTTTGTTCCAGAAGAGATTAGCCATTTCGTGTAAACTTTCAGAAATAGATGTATGTTTTCTGAAAAATATGAAGGCACGAAGCAAAGAAGAAGAAGAAGAAGGACCAAAAATGAAAGAAAATGAGAAAATGGGTGGTAACGTGAGTAGGGGTTTAGAAAGTTGATGAAGTGAACTGTCCTCAGAAGACTTGAACAATGTCTGAAGACAAAGATCTGCTGATCAMTGTACTTTGACTCAAAAGAGTTCCTTCGTCTAACTGGGCTATGAAAGATACAAACTTGCTCTCAAAACCCTAGTAGATAAAGAAAGCCATACAGTAGGAAATCTAGACATCTTCTTCTTCTTCTTATTCATCCGAACCGACCCGCCTACCACTGAATGAAAGTGAATACCAAAAAAAATAGCTTAAGAAATCTCATTGAGTCTGACGACGCCGTCGTTGTGTTCAACGAGCACATCCGCTGTCGATGTGTGATTAGCATACGCGTGGCAGAATGCCTTTTCTTTCTCCTAGAACAGTATGTCACATACCACTCCCAGGGGCTCAATTCCTCATTCTCCGCTATTTTTCTGCTCAAAAGAATGTCAACCAAAAATAACGGGCGGTGTCGGTGAAGAAAAAAAAAACATAACAATGACAAACATGAGCATTTACTGTGATGGAAGATTCCCTCTGTAATCTAACACTTCCGTTCTGTCTTCTCAAATAAAAATTACCACTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>451 202 138 92 65 50 2</canonical_bands>
                <polymorphic_bands>451 202 142 138 65 2</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>152 119 75 65 58 57 52 46 45 40 37 36 35 33 28 27 17 15 13 11 10 8 7 6 4 2 2</canonical_bands>
                <polymorphic_bands>204 119 75 65 58 57 46 45 40 37 36 35 33 28 27 17 15 13 11 10 8 7 6 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCAAAGAAGAAGAAGAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>AGATTTCCTACTGTATGGCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGCAAAGAAGAAGAAGAAGAAGGACCAAAAATGAAAGAAAATGAGAAAATGGGTGGTAACGTGAGTAGGGGTTTAGAAAGTTGATGAAGTGAACTGTCCTCAGAAGACTTGAACAATGTCTGAAGACAAAGATCTGCTGATCACTGTACTTTGACTCAAAAGAGTTCCTTCGTCTAACTGGGCTATGAAAGATACAAACTTGCTCTCAAAACCCTAGTAGATAAAGAAAGCCATACAGTAGGAAATCT</canonical_amplicon>
		<polymorphic_amplicon>AAGCAAAGAAGAAGAAGAAGAAGGACCAAAAATGAAAGAAAATGAGAAAATGGGTGGTAACGTGAGTAGGGGTTTAGAAAGTTGATGAAGTGAACTGTCCTCAGAAGACTTGAACAATGTCTGAAGACAAAGATCTGCTGATCAMTGTACTTTGACTCAAAAGAGTTCCTTCGTCTAACTGGGCTATGAAAGATACAAACTTGCTCTCAAAACCCTAGTAGATAAAGAAAGCCATACAGTAGGAAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30366</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>109423</contig_pos>
        <strand>+</strand>
        <context>AGATGAAACA[A/G]TAATGCCTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAGCTATCAGATGAATCACAGGCTCGTCTTGTTCTGGCAGATGAAACA</left_flank>
        <right_flank>TAATGCCTTGTGATGCAAATTGGCATCAGTATGCGGATAATGGTTGTTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTATCCTTATTGTCTCTTTCCTTATCTTCAAAGCATAAATACTATTAAAATCCGTTGTATCCTTGACGTCTTCTTATTTAATACTCTCTTTTTTTTCAATTTTAAGTCCGAGTTCAACCACCGACGATCAGCCGATTACTGGGGTTGAAGAGGTGTTGAAATTAAATAGTCTAAATTCGGTTCATTCGAAAAAATTTCATGTTCATCCTCTCGTTCTTTTTTGTGTCTCGTTTCGTTTTAGTTTATTGTGATACAGGTAGGAAAGTGCATTACTTAAAAAAAAGAAAGATCTCAAATTTTAGATGATCATATCCAAGAGTTCCTTCGAAACAAAACGTTCCACGATGTCATCGGATGTAAGATTGGTATTTACTATGTTTTAGTATGAGAATAATTGAAGTTTCAGTGAGTCAAAAATATCAAAGAACGAAGTATCTCGAATCTCAGCAGAAGCTATCAGATGAATCACAGGCTCGTCTTGTTCTGGCAGATGAAACAGTAATGCCTTGTGATGCAAATTGGCATCAGTATGCGGATAATGGTTGTTGCTATCGGGTAAGATGATTTTGGGTCAAAATAAACCGATGTAATTTTTCCGGAACGTTTCTAAAAATACAATTTATTTAAAATAAAACTTTTTTAACGCTTTTTTTCGGTTGGAATTCACAACGTTTCGAAAAAATCCATCTTTCTTATATATAAAACGCTAGATGCGTCTGTCCGTCCCGATGTCAGTCTGTCAACTTTTAAAAAGCTTGAAAAATAAATATAGATTTACGTGATCCAAAAAGTGAAGAGCGAAGCTACGAACCAGTAAAAAACTAGATTGAATCGCGCCGAAGGCACACCAGCTTGCTGGTGTTTAAATGAAAAGACTGGGCCAAAACGCTACAACTCTTTTGCAGATATCTGACGAGAAAAGTGACTGGTACGGTGGTACAAATATATGCAAGGCTTTGAACCCAGATGCTCACATGGGCTCTTTTCACAGTCAAGCTG</canonical>
            <polymorphic>ATTATCCTTATTGTCTCTTTCCTTATCTTCAAAGCATAAATACTATTAAAATCCGTTGTATCCTTGACGTCTTCTTATTTAATACTCTCTTTTTTTTCAATTTTAAGTCCGAGTTCAACCACCGACGATCAGCCGATTACTGGGGTTGAAGAGGTGTTGAAATTAAATAGTCTAAATTCGGTTCATTCGAAAAAATTTCATGTTCATCCTCTCGTTCTTTTTTGTGTCTCGTTTCGTTTTAGTTTATTGTGATACAGGTAGGAAAGTGCATTACTTAAAAAAAAGAAAGATCTCAAATTTTAGATGATCATATCCAAGAGTTCCTTCGAAACAAAACGTTCCACGATGTCATCGGATGTAAGATTGGTATTTACTATGTTTTAGTATGAGAATAATTGAAGTTTCAGTGAGTCAAAAATATCAAAGAACGAAGTATCTCGAATCTCAGCAGAAGCTATCAGATGAATCACAGGCTCGTCTTGTTCTGGCAGATGAAACARTAATGCCTTGTGATGCAAATTGGCATCAGTATGCGGATAATGGTTGTTGCTATCGGGTAAGATGATTTTGGGTCAAAATAAACCGATGTAATTTTTCCGGAACGTTTCTAAAAATACAATTTATTTAAAATAAAACTTTTTTAACGCTTTTTTTCGGTTGGAATTCACAACGTTTCGAAAAAATCCATCTTTCTTATATATAAAACGCTAGATGCGTCTGTCCGTCCCGATGTCAGTCTGTCAACTTTTAAAAAGCTTGAAAAATAAATATAGATTTACGTGATCCAAAAAGTGAAGAGCGAAGCTACGAACCAGTAAAAAACTAGATTGAATCGCGCCGAAGGCACACCAGCTTGCTGGTGTTTAAATGAAAAGACTGGGCCAAAACGCTACAACTCTTTTGCAGATATCTGACGAGAAAAGTGACTGGTACGGTGGTACAAATATATGCAAGGCTTTGAACCCAGATGCTCACATGGGCTCTTTTCACAGTCAAGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>499 435 57 9</canonical_bands>
                <polymorphic_bands>934 57 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCGGATGTAAGATTGGTATTTA</pcr_primer_p1>
		<pcr_primer_p2>AAATTACATCGGTTTATTTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATCGGATGTAAGATTGGTATTTACTATGTTTTAGTATGAGAATAATTGAAGTTTCAGTGAGTCAAAAATATCAAAGAACGAAGTATCTCGAATCTCAGCAGAAGCTATCAGATGAATCACAGGCTCGTCTTGTTCTGGCAGATGAAACAGTAATGCCTTGTGATGCAAATTGGCATCAGTATGCGGATAATGGTTGTTGCTATCGGGTAAGATGATTTTGGGTCAAAATAAACCGATGTAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATCGGATGTAAGATTGGTATTTACTATGTTTTAGTATGAGAATAATTGAAGTTTCAGTGAGTCAAAAATATCAAAGAACGAAGTATCTCGAATCTCAGCAGAAGCTATCAGATGAATCACAGGCTCGTCTTGTTCTGGCAGATGAAACARTAATGCCTTGTGATGCAAATTGGCATCAGTATGCGGATAATGGTTGTTGCTATCGGGTAAGATGATTTTGGGTCAAAATAAACCGATGTAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30367</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>147746</contig_pos>
        <strand>+</strand>
        <context>AAACATGATG[A/G]AACAATCAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTCGCATAATCGAAGTTTTCATCAAGAAAGGAGTTAGAAAACATGATG</left_flank>
        <right_flank>AACAATCAACAGGAACGTTTTCCTTGTTATCATTTTATCCCAACTAACAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAACTTTGGTCCGTATTTGAAGAAAAACACAAATATACTCATTTTCGTAACTTCCCATTTTTTAAAGACGTATATATATATATATATATATATATATATATATCCTTCGTTCTTTTTCGCAAAAATAAAAACAAAATAAATGTTTTTTCTGTGTTCCTCTATGTTTTCATGAGCATCGTCGATTCTTTCACCTTGGCTTGTGTTTTCGAGCATGTGTTCACTCAAAGTCACAACAAATTAAATTTACTAGAAAGGGATCCAATTACTTTTCTTAGGTTCCCTTTCGAGATCTCGTCTGTCTTACCTTATAAAAAATGTTGAACGAAGATGTGGGAGTTATAATAAACTTGAATTCCAACTACTCTAATTATCAGTTTGACTTTCGAACATTTCCCGTTCTTCTGTCTATTTTCCCATTTTTGTACATGATTCCAACTTGTTTTGTTACATTTCGCATAATCGAAGTTTTCATCAAGAAAGGAGTTAGAAAACATGATGAAACAATCAACAGGAACGTTTTCCTTGTTATCATTTTATCCCAACTAACAGTAAGTTCAAGAATATTCCTTGATTTTTATACCTTTCTGTTTTTAGTGTCTCTGTTATTTCTTCTGTGATTTCGTGATGATCCGTCTTCCATCCACAGGAATTTTGACTTCTTGGTGCCAACGAAACCCACCAAACCTCAACCTGACGATTTTCTTCACATCCCACATGTATTTCAGCTATCCTCTAATGATTTACCCAGTTTTACTCGCTATAGTGAGATACACTCCTATTCATTACCCTCATAAACACCATCTAGTAAGTTTGGAACTAATCAACAACAAAAAAAATTCAACCATTTTCTTCCAGCTCAACACTAAAATCCTCTCCTTCAGTATTCCAATAATCCACTTCTATCCATTTCCCTTTCTATTTTTCATGTTCCCAGCTCTTGGTGTCTGCCGTCAATTAAAACCACCGTATCCATTTGGATCTGCATTCATTCATTTCATT</canonical>
            <polymorphic>ACAACTTTGGTCCGTATTTGAAGAAAAACACAAATATACTCATTTTCGTAACTTCCCATTTTTTAAAGACGTATATATATATATATATATATATATATATATATCCTTCGTTCTTTTTCGCAAAAATAAAAACAAAATAAATGTTTTTTCTGTGTTCCTCTATGTTTTCATGAGCATCGTCGATTCTTTCACCTTGGCTTGTGTTTTCGAGCATGTGTTCACTCAAAGTCACAACAAATTAAATTTACTAGAAAGGGATCCAATTACTTTTCTTAGGTTCCCTTTCGAGATCTCGTCTGTCTTACCTTATAAAAAATGTTGAACGAAGATGTGGGAGTTATAATAAACTTGAATTCCAACTACTCTAATTATCAGTTTGACTTTCGAACATTTCCCGTTCTTCTGTCTATTTTCCCATTTTTGTACATGATTCCAACTTGTTTTGTTACATTTCGCATAATCGAAGTTTTCATCAAGAAAGGAGTTAGAAAACATGATGRAACAATCAACAGGAACGTTTTCCTTGTTATCATTTTATCCCAACTAACAGTAAGTTCAAGAATATTCCTTGATTTTTATACCTTTCTGTTTTTAGTGTCTCTGTTATTTCTTCTGTGATTTCGTGATGATCCGTCTTCCATCCACAGGAATTTTGACTTCTTGGTGCCAACGAAACCCACCAAACCTCAACCTGACGATTTTCTTCACATCCCACATGTATTTCAGCTATCCTCTAATGATTTACCCAGTTTTACTCGCTATAGTGAGATACACTCCTATTCATTACCCTCATAAACACCATCTAGTAAGTTTGGAACTAATCAACAACAAAAAAAATTCAACCATTTTCTTCCAGCTCAACACTAAAATCCTCTCCTTCAGTATTCCAATAATCCACTTCTATCCATTTCCCTTTCTATTTTTCATGTTCCCAGCTCTTGGTGTCTGCCGTCAATTAAAACCACCGTATCCATTTGGATCTGCATTCATTCATTTCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTTTGTACATGATTCCAACT</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAGTCAAAATTCCTGTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CATTTTTGTACATGATTCCAACTTGTTTTGTTACATTTCGCATAATCGAAGTTTTCATCAAGAAAGGAGTTAGAAAACATGATGAAACAATCAACAGGAACGTTTTCCTTGTTATCATTTTATCCCAACTAACAGTAAGTTCAAGAATATTCCTTGATTTTTATACCTTTCTGTTTTTAGTGTCTCTGTTATTTCTTCTGTGATTTCGTGATGATCCGTCTTCCATCCACAGGAATTTTGACTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>CATTTTTGTACATGATTCCAACTTGTTTTGTTACATTTCGCATAATCGAAGTTTTCATCAAGAAAGGAGTTAGAAAACATGATGRAACAATCAACAGGAACGTTTTCCTTGTTATCATTTTATCCCAACTAACAGTAAGTTCAAGAATATTCCTTGATTTTTATACCTTTCTGTTTTTAGTGTCTCTGTTATTTCTTCTGTGATTTCGTGATGATCCGTCTTCCATCCACAGGAATTTTGACTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30368</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>150581</contig_pos>
        <strand></strand>
        <context>gaagcaataa[A/C]atttttcacc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTATTTTTATGGGAATCTACATGGATTTCTGCACAAAATGAAGCAATAA</left_flank>
        <right_flank>ATTTTTCACCGCACACCACCTTTAATTGCACAGTCCTTCTCCAAATCTTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTGTGCGGTGAAAAATTTTATTGCTTCATTTTGTGCAAAAACCCATGTAGATTCCCATAAAAATCAAGAAAAAATTCAAAAAAATTCCTTCAGTGAGAAAAACGGCATCGAAAAATCAAAGTCGTATCTGGTGGCCTAGCGGCCAGGTGAGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGATTTTTTTATAGATTTTCAGTGTTTTCTCTAGCGTTTTTAAAGATTTCAAAGTTTTATTGTTAATTTCCTCCCAGGTGTATGAAAAAACCTGACAAAAATCAGAGAAAACACTGAAAATCAATAAAAATTCGAACTTCGCGCGCTTTTACCGGCAGTTGGCCTAGAAAACTCTCACCTGGTCGCTAGGCCATCAGATACAACTTTGACTTTTCGATGCCGTTTTTCTCAAGGAAGGCATTTTTTTGAACTTTTTCTTTATTTTTATGGGAATCTACATGGATTTCTGCACAAAATGAAGCAATAAAATTTTTCACCGCACACCACCTTTAATTGCACAGTCCTTCTCCAAATCTTTGGCGTTATGTCTAGCTTCTTTTTTTTCAAGAAATATTCTGAAATTGCAGCAGCTCGGTGTATCTCTTTTTCTATTTGTGTTCTTTATTCTGAAGTTGTTCTAATAAAAATCTAGCGTTTTTGATCATCCTGATTTTTTTCCAAGAATTAGTCAAACTGAAAATACGCAGACAGAAAAAAAAACAGCGATTTAATCAGTGCGAGGCAATAAGGAAATAAAAATAACTCAATAAAAAGCTAAAAGGATTTAATTCCGTCGGGTGAGTCCTTTTTAGTCTTCAACCTTTTTTCTAAATCAATAAATATTTTTTTCATCGGGGAAGTGTTTGGAAACTTCTGACAACGTGCGTTTTTGAAAACGTCATGAGGCATTTTGTAAGTATCAATTAGAGTCAGGTTTCAACTCAAAATGCACTCAAAATGTCTTCGTTTTTCTTTCTATCATGCTTTT</canonical>
            <polymorphic>TGGTGTGCGGTGAAAAATTTTATTGCTTCATTTTGTGCAAAAACCCATGTAGATTCCCATAAAAATCAAGAAAAAATTCAAAAAAATTCCTTCAGTGAGAAAAACGGCATCGAAAAATCAAAGTCGTATCTGGTGGCCTAGCGGCCAGGTGAGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGATTTTTTTATAGATTTTCAGTGTTTTCTCTAGCGTTTTTAAAGATTTCAAAGTTTTATTGTTAATTTCCTCCCAGGTGTATGAAAAAACCTGACAAAAATCAGAGAAAACACTGAAAATCAATAAAAATTCGAACTTCGCGCGCTTTTACCGGCAGTTGGCCTAGAAAACTCTCACCTGGTCGCTAGGCCATCAGATACAACTTTGACTTTTCGATGCCGTTTTTCTCAAGGAAGGCATTTTTTTGAACTTTTTCTTTATTTTTATGGGAATCTACATGGATTTCTGCACAAAATGAAGCAATAAMATTTTTCACCGCACACCACCTTTAATTGCACAGTCCTTCTCCAAATCTTTGGCGTTATGTCTAGCTTCTTTTTTTTCAAGAAATATTCTGAAATTGCAGCAGCTCGGTGTATCTCTTTTTCTATTTGTGTTCTTTATTCTGAAGTTGTTCTAATAAAAATCTAGCGTTTTTGATCATCCTGATTTTTTTCCAAGAATTAGTCAAACTGAAAATACGCAGACAGAAAAAAAAACAGCGATTTAATCAGTGCGAGGCAATAAGGAAATAAAAATAACTCAATAAAAAGCTAAAAGGATTTAATTCCGTCGGGTGAGTCCTTTTTAGTCTTCAACCTTTTTTCTAAATCAATAAATATTTTTTTCATCGGGGAAGTGTTTGGAAACTTCTGACAACGTGCGTTTTTGAAAACGTCATGAGGCATTTTGTAAGTATCAATTAGAGTCAGGTTTCAACTCAAAATGCACTCAAAATGTCTTCGTTTTTCTTTCTATCATGCTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>501 179 132 104 59 15 10</canonical_bands>
                <polymorphic_bands>680 132 104 59 15 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>179 135 104 104 103 68 68 67 64 59 24 15 10</canonical_bands>
                <polymorphic_bands>203 135 104 104 103 68 68 67 64 59 15 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATTCATTTTTGTGTTAATATCAT</pcr_primer_p1>
		<pcr_primer_p2>CCAAAGATTTGGAGAAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>588</pcr_amplicon_size>
		<canonical_amplicon>AAATTTTTCACCGCACACCACCTTTAATTGCACAGTCCTTCTCCAAATCTTTGG</canonical_amplicon>
		<polymorphic_amplicon>AMATTTTTCACCGCACACCACCTTTAATTGCACAGTCCTTCTCCAAATCTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30369</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>150805</contig_pos>
        <strand>+</strand>
        <context>ACGCAGACAG[A/T]AAAAAAAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCATCCTGATTTTTTTCCAAGAATTAGTCAAACTGAAAATACGCAGACAG</left_flank>
        <right_flank>AAAAAAAACAGCGATTTAATCAGTGCGAGGCAATAAGGAAATAAAAATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCGTTTTTAAAGATTTCAAAGTTTTATTGTTAATTTCCTCCCAGGTGTATGAAAAAACCTGACAAAAATCAGAGAAAACACTGAAAATCAATAAAAATTCGAACTTCGCGCGCTTTTACCGGCAGTTGGCCTAGAAAACTCTCACCTGGTCGCTAGGCCATCAGATACAACTTTGACTTTTCGATGCCGTTTTTCTCAAGGAAGGCATTTTTTTGAACTTTTTCTTTATTTTTATGGGAATCTACATGGATTTCTGCACAAAATGAAGCAATAAAATTTTTCACCGCACACCACCTTTAATTGCACAGTCCTTCTCCAAATCTTTGGCGTTATGTCTAGCTTCTTTTTTTTCAAGAAATATTCTGAAATTGCAGCAGCTCGGTGTATCTCTTTTTCTATTTGTGTTCTTTATTCTGAAGTTGTTCTAATAAAAATCTAGCGTTTTTGATCATCCTGATTTTTTTCCAAGAATTAGTCAAACTGAAAATACGCAGACAGAAAAAAAAACAGCGATTTAATCAGTGCGAGGCAATAAGGAAATAAAAATAACTCAATAAAAAGCTAAAAGGATTTAATTCCGTCGGGTGAGTCCTTTTTAGTCTTCAACCTTTTTTCTAAATCAATAAATATTTTTTTCATCGGGGAAGTGTTTGGAAACTTCTGACAACGTGCGTTTTTGAAAACGTCATGAGGCATTTTGTAAGTATCAATTAGAGTCAGGTTTCAACTCAAAATGCACTCAAAATGTCTTCGTTTTTCTTTCTATCATGCTTTTCTATAATTTTTGTCAAGTATAGAAAACAACGATTTTCAGTAGCTCATTTATGGATATGAACAATGTATCAATTCAAGGAAATCTTTTTTATATCAATTACGAATTCAACTTTTTCACATTTCCAGTTCTTGTGGCTTGTATCCCATTGTCCTATCTCATTCCAACTTTTTTTATTATATTCAAAGTATTCAAAGTTTACATTCGACAATTTTTGGGAAAAAGAG</canonical>
            <polymorphic>AGCGTTTTTAAAGATTTCAAAGTTTTATTGTTAATTTCCTCCCAGGTGTATGAAAAAACCTGACAAAAATCAGAGAAAACACTGAAAATCAATAAAAATTCGAACTTCGCGCGCTTTTACCGGCAGTTGGCCTAGAAAACTCTCACCTGGTCGCTAGGCCATCAGATACAACTTTGACTTTTCGATGCCGTTTTTCTCAAGGAAGGCATTTTTTTGAACTTTTTCTTTATTTTTATGGGAATCTACATGGATTTCTGCACAAAATGAAGCAATAAAATTTTTCACCGCACACCACCTTTAATTGCACAGTCCTTCTCCAAATCTTTGGCGTTATGTCTAGCTTCTTTTTTTTCAAGAAATATTCTGAAATTGCAGCAGCTCGGTGTATCTCTTTTTCTATTTGTGTTCTTTATTCTGAAGTTGTTCTAATAAAAATCTAGCGTTTTTGATCATCCTGATTTTTTTCCAAGAATTAGTCAAACTGAAAATACGCAGACAGWAAAAAAAACAGCGATTTAATCAGTGCGAGGCAATAAGGAAATAAAAATAACTCAATAAAAAGCTAAAAGGATTTAATTCCGTCGGGTGAGTCCTTTTTAGTCTTCAACCTTTTTTCTAAATCAATAAATATTTTTTTCATCGGGGAAGTGTTTGGAAACTTCTGACAACGTGCGTTTTTGAAAACGTCATGAGGCATTTTGTAAGTATCAATTAGAGTCAGGTTTCAACTCAAAATGCACTCAAAATGTCTTCGTTTTTCTTTCTATCATGCTTTTCTATAATTTTTGTCAAGTATAGAAAACAACGATTTTCAGTAGCTCATTTATGGATATGAACAATGTATCAATTCAAGGAAATCTTTTTTATATCAATTACGAATTCAACTTTTTCACATTTCCAGTTCTTGTGGCTTGTATCCCATTGTCCTATCTCATTCCAACTTTTTTTATTATATTCAAAGTATTCAAAGTTTACATTCGACAATTTTTGGGAAAAAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGTTATGTCTAGCTTCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GGAATTAAATCCTTTTAGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GCGTTATGTCTAGCTTCTTTTTTTTCAAGAAATATTCTGAAATTGCAGCAGCTCGGTGTATCTCTTTTTCTATTTGTGTTCTTTATTCTGAAGTTGTTCTAATAAAAATCTAGCGTTTTTGATCATCCTGATTTTTTTCCAAGAATTAGTCAAACTGAAAATACGCAGACAGAAAAAAAAACAGCGATTTAATCAGTGCGAGGCAATAAGGAAATAAAAATAACTCAATAAAAAGCTAAAAGGATTTAATTCC</canonical_amplicon>
		<polymorphic_amplicon>GCGTTATGTCTAGCTTCTTTTTTTTCAAGAAATATTCTGAAATTGCAGCAGCTCGGTGTATCTCTTTTTCTATTTGTGTTCTTTATTCTGAAGTTGTTCTAATAAAAATCTAGCGTTTTTGATCATCCTGATTTTTTTCCAAGAATTAGTCAAACTGAAAATACGCAGACAGWAAAAAAAACAGCGATTTAATCAGTGCGAGGCAATAAGGAAATAAAAATAACTCAATAAAAAGCTAAAAGGATTTAATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30370</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>150844</contig_pos>
        <strand>+</strand>
        <context>GGCAATAAGG[C/T]ARWAAAAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACGCAGACAGAAAAAAAAACAGCGATTTAATCAGTGCGAGGCAATAAGG</left_flank>
        <right_flank>AATAAAAATAACTCAATAAAAAGCTAAAAGGATTTAATTCCGTCGGGTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCCAGGTGTATGAAAAAACCTGACAAAAATCAGAGAAAACACTGAAAATCAATAAAAATTCGAACTTCGCGCGCTTTTACCGGCAGTTGGCCTAGAAAACTCTCACCTGGTCGCTAGGCCATCAGATACAACTTTGACTTTTCGATGCCGTTTTTCTCAAGGAAGGCATTTTTTTGAACTTTTTCTTTATTTTTATGGGAATCTACATGGATTTCTGCACAAAATGAAGCAATAAAATTTTTCACCGCACACCACCTTTAATTGCACAGTCCTTCTCCAAATCTTTGGCGTTATGTCTAGCTTCTTTTTTTTCAAGAAATATTCTGAAATTGCAGCAGCTCGGTGTATCTCTTTTTCTATTTGTGTTCTTTATTCTGAAGTTGTTCTAATAAAAATCTAGCGTTTTTGATCATCCTGATTTTTTTCCAAGAATTAGTCAAACTGAAAATACGCAGACAGAAAAAAAAACAGCGATTTAATCAGTGCGAGGCAATAAGGAAATAAAAATAACTCAATAAAAAGCTAAAAGGATTTAATTCCGTCGGGTGAGTCCTTTTTAGTCTTCAACCTTTTTTCTAAATCAATAAATATTTTTTTCATCGGGGAAGTGTTTGGAAACTTCTGACAACGTGCGTTTTTGAAAACGTCATGAGGCATTTTGTAAGTATCAATTAGAGTCAGGTTTCAACTCAAAATGCACTCAAAATGTCTTCGTTTTTCTTTCTATCATGCTTTTCTATAATTTTTGTCAAGTATAGAAAACAACGATTTTCAGTAGCTCATTTATGGATATGAACAATGTATCAATTCAAGGAAATCTTTTTTATATCAATTACGAATTCAACTTTTTCACATTTCCAGTTCTTGTGGCTTGTATCCCATTGTCCTATCTCATTCCAACTTTTTTTATTATATTCAAAGTATTCAAAGTTTACATTCGACAATTTTTGGGAAAAAGAGATGACACTATAAACCCCCATGTGTTTTTGGTTATTGTTG</canonical>
            <polymorphic>TCCCAGGTGTATGAAAAAACCTGACAAAAATCAGAGAAAACACTGAAAATCAATAAAAATTCGAACTTCGCGCGCTTTTACCGGCAGTTGGCCTAGAAAACTCTCACCTGGTCGCTAGGCCATCAGATACAACTTTGACTTTTCGATGCCGTTTTTCTCAAGGAAGGCATTTTTTTGAACTTTTTCTTTATTTTTATGGGAATCTACATGGATTTCTGCACAAAATGAAGCAATAAAATTTTTCACCGCACACCACCTTTAATTGCACAGTCCTTCTCCAAATCTTTGGCGTTATGTCTAGCTTCTTTTTTTTCAAGAAATATTCTGAAATTGCAGCAGCTCGGTGTATCTCTTTTTCTATTTGTGTTCTTTATTCTGAAGTTGTTCTAATAAAAATCTAGCGTTTTTGATCATCCTGATTTTTTTCCAAGAATTAGTCAAACTGAAAATACGCAGACAGAAAAAAAAACAGCGATTTAATCAGTGCGAGGCAATAAGGYAATAAAAATAACTCAATAAAAAGCTAAAAGGATTTAATTCCGTCGGGTGAGTCCTTTTTAGTCTTCAACCTTTTTTCTAAATCAATAAATATTTTTTTCATCGGGGAAGTGTTTGGAAACTTCTGACAACGTGCGTTTTTGAAAACGTCATGAGGCATTTTGTAAGTATCAATTAGAGTCAGGTTTCAACTCAAAATGCACTCAAAATGTCTTCGTTTTTCTTTCTATCATGCTTTTCTATAATTTTTGTCAAGTATAGAAAACAACGATTTTCAGTAGCTCATTTATGGATATGAACAATGTATCAATTCAAGGAAATCTTTTTTATATCAATTACGAATTCAACTTTTTCACATTTCCAGTTCTTGTGGCTTGTATCCCATTGTCCTATCTCATTCCAACTTTTTTTATTATATTCAAAGTATTCAAAGTTTACATTCGACAATTTTTGGGAAAAAGAGATGACACTATAAACCCCCATGTGTTTTTGGTTATTGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCCAAGAATTAGTCAAACTG</pcr_primer_p1>
		<pcr_primer_p2>TTGATACTTACAAAATGCCTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCCAAGAATTAGTCAAACTGAAAATACGCAGACAGAAAAAAAAACAGCGATTTAATCAGTGCGAGGCAATAAGGAAATAAAAATAACTCAATAAAAAGCTAAAAGGATTTAATTCCGTCGGGTGAGTCCTTTTTAGTCTTCAACCTTTTTTCTAAATCAATAAATATTTTTTTCATCGGGGAAGTGTTTGGAAACTTCTGACAACGTGCGTTTTTGAAAACGTCATGAGGCATTTTGTAAGTATCAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCCAAGAATTAGTCAAACTGAAAATACGCAGACAGAAAAAAAAACAGCGATTTAATCAGTGCGAGGCAATAAGGYAATAAAAATAACTCAATAAAAAGCTAAAAGGATTTAATTCCGTCGGGTGAGTCCTTTTTAGTCTTCAACCTTTTTTCTAAATCAATAAATATTTTTTTCATCGGGGAAGTGTTTGGAAACTTCTGACAACGTGCGTTTTTGAAAACGTCATGAGGCATTTTGTAAGTATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30371</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>150846</contig_pos>
        <strand></strand>
        <context>CAATAAGGYA[A/G]WAAAAATAAY</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCAGACAGAAAAAAAAACAGCGATTTAATCAGTGCGAGGCAATAAGGAA</left_flank>
        <right_flank>TAAAAATAACTCAATAAAAAGCTAAAAGGATTTAATTCCGTCGGGTGAGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGGTGTATGAAAAAACCTGACAAAAATCAGAGAAAACACTGAAAATCAATAAAAATTCGAACTTCGCGCGCTTTTACCGGCAGTTGGCCTAGAAAACTCTCACCTGGTCGCTAGGCCATCAGATACAACTTTGACTTTTCGATGCCGTTTTTCTCAAGGAAGGCATTTTTTTGAACTTTTTCTTTATTTTTATGGGAATCTACATGGATTTCTGCACAAAATGAAGCAATAAAATTTTTCACCGCACACCACCTTTAATTGCACAGTCCTTCTCCAAATCTTTGGCGTTATGTCTAGCTTCTTTTTTTTCAAGAAATATTCTGAAATTGCAGCAGCTCGGTGTATCTCTTTTTCTATTTGTGTTCTTTATTCTGAAGTTGTTCTAATAAAAATCTAGCGTTTTTGATCATCCTGATTTTTTTCCAAGAATTAGTCAAACTGAAAATACGCAGACAGAAAAAAAAACAGCGATTTAATCAGTGCGAGGCAATAAGGAAATAAAAATAACTCAATAAAAAGCTAAAAGGATTTAATTCCGTCGGGTGAGTCCTTTTTAGTCTTCAACCTTTTTTCTAAATCAATAAATATTTTTTTCATCGGGGAAGTGTTTGGAAACTTCTGACAACGTGCGTTTTTGAAAACGTCATGAGGCATTTTGTAAGTATCAATTAGAGTCAGGTTTCAACTCAAAATGCACTCAAAATGTCTTCGTTTTTCTTTCTATCATGCTTTTCTATAATTTTTGTCAAGTATAGAAAACAACGATTTTCAGTAGCTCATTTATGGATATGAACAATGTATCAATTCAAGGAAATCTTTTTTATATCAATTACGAATTCAACTTTTTCACATTTCCAGTTCTTGTGGCTTGTATCCCATTGTCCTATCTCATTCCAACTTTTTTTATTATATTCAAAGTATTCAAAGTTTACATTCGACAATTTTTGGGAAAAAGAGATGACACTATAAACCCCCATGTGTTTTTGGTTATTGTTGCT</canonical>
            <polymorphic>CCAGGTGTATGAAAAAACCTGACAAAAATCAGAGAAAACACTGAAAATCAATAAAAATTCGAACTTCGCGCGCTTTTACCGGCAGTTGGCCTAGAAAACTCTCACCTGGTCGCTAGGCCATCAGATACAACTTTGACTTTTCGATGCCGTTTTTCTCAAGGAAGGCATTTTTTTGAACTTTTTCTTTATTTTTATGGGAATCTACATGGATTTCTGCACAAAATGAAGCAATAAAATTTTTCACCGCACACCACCTTTAATTGCACAGTCCTTCTCCAAATCTTTGGCGTTATGTCTAGCTTCTTTTTTTTCAAGAAATATTCTGAAATTGCAGCAGCTCGGTGTATCTCTTTTTCTATTTGTGTTCTTTATTCTGAAGTTGTTCTAATAAAAATCTAGCGTTTTTGATCATCCTGATTTTTTTCCAAGAATTAGTCAAACTGAAAATACGCAGACAGAAAAAAAAACAGCGATTTAATCAGTGCGAGGCAATAAGGAARTAAAAATAACTCAATAAAAAGCTAAAAGGATTTAATTCCGTCGGGTGAGTCCTTTTTAGTCTTCAACCTTTTTTCTAAATCAATAAATATTTTTTTCATCGGGGAAGTGTTTGGAAACTTCTGACAACGTGCGTTTTTGAAAACGTCATGAGGCATTTTGTAAGTATCAATTAGAGTCAGGTTTCAACTCAAAATGCACTCAAAATGTCTTCGTTTTTCTTTCTATCATGCTTTTCTATAATTTTTGTCAAGTATAGAAAACAACGATTTTCAGTAGCTCATTTATGGATATGAACAATGTATCAATTCAAGGAAATCTTTTTTATATCAATTACGAATTCAACTTTTTCACATTTCCAGTTCTTGTGGCTTGTATCCCATTGTCCTATCTCATTCCAACTTTTTTTATTATATTCAAAGTATTCAAAGTTTACATTCGACAATTTTTGGGAAAAAGAGATGACACTATAAACCCCCATGTGTTTTTGGTTATTGTTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCCAAGAATTAGTCAAACTG</pcr_primer_p1>
		<pcr_primer_p2>TTGATACTTACAAAATGCCTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCCAAGAATTAGTCAAACTGAAAATACGCAGACAGAAAAAAAAACAGCGATTTAATCAGTGCGAGGCAATAAGGAAATAAAAATAACTCAATAAAAAGCTAAAAGGATTTAATTCCGTCGGGTGAGTCCTTTTTAGTCTTCAACCTTTTTTCTAAATCAATAAATATTTTTTTCATCGGGGAAGTGTTTGGAAACTTCTGACAACGTGCGTTTTTGAAAACGTCATGAGGCATTTTGTAAGTATCAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCCAAGAATTAGTCAAACTGAAAATACGCAGACAGAAAAAAAAACAGCGATTTAATCAGTGCGAGGCAATAAGGAARTAAAAATAACTCAATAAAAAGCTAAAAGGATTTAATTCCGTCGGGTGAGTCCTTTTTAGTCTTCAACCTTTTTTCTAAATCAATAAATATTTTTTTCATCGGGGAAGTGTTTGGAAACTTCTGACAACGTGCGTTTTTGAAAACGTCATGAGGCATTTTGTAAGTATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30372</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>150847</contig_pos>
        <strand></strand>
        <context>AATAAGGYAR[T/A]AAAAATAAYT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GCAGACAGAAAAAAAAACAGCGATTTAATCAGTGCGAGGCAATAAGGAAA</left_flank>
        <right_flank>AAAAATAACTCAATAAAAAGCTAAAAGGATTTAATTCCGTCGGGTGAGTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGGTGTATGAAAAAACCTGACAAAAATCAGAGAAAACACTGAAAATCAATAAAAATTCGAACTTCGCGCGCTTTTACCGGCAGTTGGCCTAGAAAACTCTCACCTGGTCGCTAGGCCATCAGATACAACTTTGACTTTTCGATGCCGTTTTTCTCAAGGAAGGCATTTTTTTGAACTTTTTCTTTATTTTTATGGGAATCTACATGGATTTCTGCACAAAATGAAGCAATAAAATTTTTCACCGCACACCACCTTTAATTGCACAGTCCTTCTCCAAATCTTTGGCGTTATGTCTAGCTTCTTTTTTTTCAAGAAATATTCTGAAATTGCAGCAGCTCGGTGTATCTCTTTTTCTATTTGTGTTCTTTATTCTGAAGTTGTTCTAATAAAAATCTAGCGTTTTTGATCATCCTGATTTTTTTCCAAGAATTAGTCAAACTGAAAATACGCAGACAGAAAAAAAAACAGCGATTTAATCAGTGCGAGGCAATAAGGAAATAAAAATAACTCAATAAAAAGCTAAAAGGATTTAATTCCGTCGGGTGAGTCCTTTTTAGTCTTCAACCTTTTTTCTAAATCAATAAATATTTTTTTCATCGGGGAAGTGTTTGGAAACTTCTGACAACGTGCGTTTTTGAAAACGTCATGAGGCATTTTGTAAGTATCAATTAGAGTCAGGTTTCAACTCAAAATGCACTCAAAATGTCTTCGTTTTTCTTTCTATCATGCTTTTCTATAATTTTTGTCAAGTATAGAAAACAACGATTTTCAGTAGCTCATTTATGGATATGAACAATGTATCAATTCAAGGAAATCTTTTTTATATCAATTACGAATTCAACTTTTTCACATTTCCAGTTCTTGTGGCTTGTATCCCATTGTCCTATCTCATTCCAACTTTTTTTATTATATTCAAAGTATTCAAAGTTTACATTCGACAATTTTTGGGAAAAAGAGATGACACTATAAACCCCCATGTGTTTTTGGTTATTGTTGCTT</canonical>
            <polymorphic>CAGGTGTATGAAAAAACCTGACAAAAATCAGAGAAAACACTGAAAATCAATAAAAATTCGAACTTCGCGCGCTTTTACCGGCAGTTGGCCTAGAAAACTCTCACCTGGTCGCTAGGCCATCAGATACAACTTTGACTTTTCGATGCCGTTTTTCTCAAGGAAGGCATTTTTTTGAACTTTTTCTTTATTTTTATGGGAATCTACATGGATTTCTGCACAAAATGAAGCAATAAAATTTTTCACCGCACACCACCTTTAATTGCACAGTCCTTCTCCAAATCTTTGGCGTTATGTCTAGCTTCTTTTTTTTCAAGAAATATTCTGAAATTGCAGCAGCTCGGTGTATCTCTTTTTCTATTTGTGTTCTTTATTCTGAAGTTGTTCTAATAAAAATCTAGCGTTTTTGATCATCCTGATTTTTTTCCAAGAATTAGTCAAACTGAAAATACGCAGACAGAAAAAAAAACAGCGATTTAATCAGTGCGAGGCAATAAGGAAAWAAAAATAACTCAATAAAAAGCTAAAAGGATTTAATTCCGTCGGGTGAGTCCTTTTTAGTCTTCAACCTTTTTTCTAAATCAATAAATATTTTTTTCATCGGGGAAGTGTTTGGAAACTTCTGACAACGTGCGTTTTTGAAAACGTCATGAGGCATTTTGTAAGTATCAATTAGAGTCAGGTTTCAACTCAAAATGCACTCAAAATGTCTTCGTTTTTCTTTCTATCATGCTTTTCTATAATTTTTGTCAAGTATAGAAAACAACGATTTTCAGTAGCTCATTTATGGATATGAACAATGTATCAATTCAAGGAAATCTTTTTTATATCAATTACGAATTCAACTTTTTCACATTTCCAGTTCTTGTGGCTTGTATCCCATTGTCCTATCTCATTCCAACTTTTTTTATTATATTCAAAGTATTCAAAGTTTACATTCGACAATTTTTGGGAAAAAGAGATGACACTATAAACCCCCATGTGTTTTTGGTTATTGTTGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCCAAGAATTAGTCAAACTG</pcr_primer_p1>
		<pcr_primer_p2>TTGATACTTACAAAATGCCTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCCAAGAATTAGTCAAACTGAAAATACGCAGACAGAAAAAAAAACAGCGATTTAATCAGTGCGAGGCAATAAGGAAATAAAAATAACTCAATAAAAAGCTAAAAGGATTTAATTCCGTCGGGTGAGTCCTTTTTAGTCTTCAACCTTTTTTCTAAATCAATAAATATTTTTTTCATCGGGGAAGTGTTTGGAAACTTCTGACAACGTGCGTTTTTGAAAACGTCATGAGGCATTTTGTAAGTATCAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCCAAGAATTAGTCAAACTGAAAATACGCAGACAGAAAAAAAAACAGCGATTTAATCAGTGCGAGGCAATAAGGAAAWAAAAATAACTCAATAAAAAGCTAAAAGGATTTAATTCCGTCGGGTGAGTCCTTTTTAGTCTTCAACCTTTTTTCTAAATCAATAAATATTTTTTTCATCGGGGAAGTGTTTGGAAACTTCTGACAACGTGCGTTTTTGAAAACGTCATGAGGCATTTTGTAAGTATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30373</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>150856</contig_pos>
        <strand></strand>
        <context>RWAAAAATAA[C/T]TCAATAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAAAACAGCGATTTAATCAGTGCGAGGCAATAAGGAAATAAAAATAA</left_flank>
        <right_flank>TCAATAAAAAGCTAAAAGGATTTAATTCCGTCGGGTGAGTCCTTTTTAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAAACCTGACAAAAATCAGAGAAAACACTGAAAATCAATAAAAATTCGAACTTCGCGCGCTTTTACCGGCAGTTGGCCTAGAAAACTCTCACCTGGTCGCTAGGCCATCAGATACAACTTTGACTTTTCGATGCCGTTTTTCTCAAGGAAGGCATTTTTTTGAACTTTTTCTTTATTTTTATGGGAATCTACATGGATTTCTGCACAAAATGAAGCAATAAAATTTTTCACCGCACACCACCTTTAATTGCACAGTCCTTCTCCAAATCTTTGGCGTTATGTCTAGCTTCTTTTTTTTCAAGAAATATTCTGAAATTGCAGCAGCTCGGTGTATCTCTTTTTCTATTTGTGTTCTTTATTCTGAAGTTGTTCTAATAAAAATCTAGCGTTTTTGATCATCCTGATTTTTTTCCAAGAATTAGTCAAACTGAAAATACGCAGACAGAAAAAAAAACAGCGATTTAATCAGTGCGAGGCAATAAGGAAATAAAAATAACTCAATAAAAAGCTAAAAGGATTTAATTCCGTCGGGTGAGTCCTTTTTAGTCTTCAACCTTTTTTCTAAATCAATAAATATTTTTTTCATCGGGGAAGTGTTTGGAAACTTCTGACAACGTGCGTTTTTGAAAACGTCATGAGGCATTTTGTAAGTATCAATTAGAGTCAGGTTTCAACTCAAAATGCACTCAAAATGTCTTCGTTTTTCTTTCTATCATGCTTTTCTATAATTTTTGTCAAGTATAGAAAACAACGATTTTCAGTAGCTCATTTATGGATATGAACAATGTATCAATTCAAGGAAATCTTTTTTATATCAATTACGAATTCAACTTTTTCACATTTCCAGTTCTTGTGGCTTGTATCCCATTGTCCTATCTCATTCCAACTTTTTTTATTATATTCAAAGTATTCAAAGTTTACATTCGACAATTTTTGGGAAAAAGAGATGACACTATAAACCCCCATGTGTTTTTGGTTATTGTTGCTTCACAGATTA</canonical>
            <polymorphic>GAAAAAACCTGACAAAAATCAGAGAAAACACTGAAAATCAATAAAAATTCGAACTTCGCGCGCTTTTACCGGCAGTTGGCCTAGAAAACTCTCACCTGGTCGCTAGGCCATCAGATACAACTTTGACTTTTCGATGCCGTTTTTCTCAAGGAAGGCATTTTTTTGAACTTTTTCTTTATTTTTATGGGAATCTACATGGATTTCTGCACAAAATGAAGCAATAAAATTTTTCACCGCACACCACCTTTAATTGCACAGTCCTTCTCCAAATCTTTGGCGTTATGTCTAGCTTCTTTTTTTTCAAGAAATATTCTGAAATTGCAGCAGCTCGGTGTATCTCTTTTTCTATTTGTGTTCTTTATTCTGAAGTTGTTCTAATAAAAATCTAGCGTTTTTGATCATCCTGATTTTTTTCCAAGAATTAGTCAAACTGAAAATACGCAGACAGAAAAAAAAACAGCGATTTAATCAGTGCGAGGCAATAAGGAAATAAAAATAAYTCAATAAAAAGCTAAAAGGATTTAATTCCGTCGGGTGAGTCCTTTTTAGTCTTCAACCTTTTTTCTAAATCAATAAATATTTTTTTCATCGGGGAAGTGTTTGGAAACTTCTGACAACGTGCGTTTTTGAAAACGTCATGAGGCATTTTGTAAGTATCAATTAGAGTCAGGTTTCAACTCAAAATGCACTCAAAATGTCTTCGTTTTTCTTTCTATCATGCTTTTCTATAATTTTTGTCAAGTATAGAAAACAACGATTTTCAGTAGCTCATTTATGGATATGAACAATGTATCAATTCAAGGAAATCTTTTTTATATCAATTACGAATTCAACTTTTTCACATTTCCAGTTCTTGTGGCTTGTATCCCATTGTCCTATCTCATTCCAACTTTTTTTATTATATTCAAAGTATTCAAAGTTTACATTCGACAATTTTTGGGAAAAAGAGATGACACTATAAACCCCCATGTGTTTTTGGTTATTGTTGCTTCACAGATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCCAAGAATTAGTCAAACTG</pcr_primer_p1>
		<pcr_primer_p2>TTGATACTTACAAAATGCCTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCCAAGAATTAGTCAAACTGAAAATACGCAGACAGAAAAAAAAACAGCGATTTAATCAGTGCGAGGCAATAAGGAAATAAAAATAACTCAATAAAAAGCTAAAAGGATTTAATTCCGTCGGGTGAGTCCTTTTTAGTCTTCAACCTTTTTTCTAAATCAATAAATATTTTTTTCATCGGGGAAGTGTTTGGAAACTTCTGACAACGTGCGTTTTTGAAAACGTCATGAGGCATTTTGTAAGTATCAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCCAAGAATTAGTCAAACTGAAAATACGCAGACAGAAAAAAAAACAGCGATTTAATCAGTGCGAGGCAATAAGGAAATAAAAATAAYTCAATAAAAAGCTAAAAGGATTTAATTCCGTCGGGTGAGTCCTTTTTAGTCTTCAACCTTTTTTCTAAATCAATAAATATTTTTTTCATCGGGGAAGTGTTTGGAAACTTCTGACAACGTGCGTTTTTGAAAACGTCATGAGGCATTTTGTAAGTATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30374</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>155076</contig_pos>
        <strand>+</strand>
        <context>AGTCATTCTC[G/T]TTTCTCCCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGGAAATGCGCCCGCTTTTGGGATCAATTTATACTCTTCAGTCATTCTC</left_flank>
        <right_flank>TTTCTCCCCAAAAACCCATGTTTCTCGTTCCTATTTTTACCTATATTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGATGCCAATGTCAACCTTATCGCTTCTTGATTTTTCTGATATTTTTTCTCATTCTTGATCTTCTTTATATTTCTTAAATAAGGTTAAACTTTTCTCTGTTTCTTTCTTTTTGATCTCATTCTTGTTATCCAAGTTCAAAGAATTAAATATTCTCGAACAATCGAGCAATTATTCAATGAAAATACAGGATTTGTAACATGTGTCTGCTCTTCTAAAGTGTATGTGAAACTTCCTGAAAAGCGACCATTGAAAAATTGTCGCGAATTCAGGTGACCGAATATCACCTCTTCACGACTTTTTCTCCTTTTTAATTAATTCTTCTTTTATTCCCTGTATTTTATGTAATTATATTCACCAACGCCGACGCGGCCCACAACAATGCCGATTTGAATCACCCGCCAATTTGAGGATTACTGTACCCTGCACATCTAACTGTCGACGCGAACCAAGGAAATGCGCCCGCTTTTGGGATCAATTTATACTCTTCAGTCATTCTCGTTTCTCCCCAAAAACCCATGTTTCTCGTTCCTATTTTTACCTATATTTTTATATAATATTATTCTGGTGTATTCTTGTCGGCAGAGATGATTCTGGCAACAGAATCGTTTCCGTTGTAGGCAAAATTAGGCCAATAAATTCGGTGTGTCTTAAATTCTGTGTTCTTGTTGTCTTTTCTCTCTTTTAAGGTTTGTTGTGTCTCTAGGGCTGTTTTAGAGCAGTATGACTGCAAAATAAAAATTGAGCACCATGGGAGTAATAGTTTGGGGCGGAAAATGAAAATAATGAATTTTTGGAGAGCTGTGCATTTTTCCATTTTTTTTTCTCGCATAAACTGCAATCGTACTCTTTCAGGATTTTCGATGCTTCCTTATATGTTCTTCATAGTAACTATGTCTTGCTGTAGAGTCGATCTTTCGATCTTATGATCATTAGAAAAATACTTCCTTCTGGATCGTCAGAATCCTTAATTTCATCCTGTCTTGATTCTGTTAGTTTAA</canonical>
            <polymorphic>ACGATGCCAATGTCAACCTTATCGCTTCTTGATTTTTCTGATATTTTTTCTCATTCTTGATCTTCTTTATATTTCTTAAATAAGGTTAAACTTTTCTCTGTTTCTTTCTTTTTGATCTCATTCTTGTTATCCAAGTTCAAAGAATTAAATATTCTCGAACAATCGAGCAATTATTCAATGAAAATACAGGATTTGTAACATGTGTCTGCTCTTCTAAAGTGTATGTGAAACTTCCTGAAAAGCGACCATTGAAAAATTGTCGCGAATTCAGGTGACCGAATATCACCTCTTCACGACTTTTTCTCCTTTTTAATTAATTCTTCTTTTATTCCCTGTATTTTATGTAATTATATTCACCAACGCCGACGCGGCCCACAACAATGCCGATTTGAATCACCCGCCAATTTGAGGATTACTGTACCCTGCACATCTAACTGTCGACGCGAACCAAGGAAATGCGCCCGCTTTTGGGATCAATTTATACTCTTCAGTCATTCTCKTTTCTCCCCAAAAACCCATGTTTCTCGTTCCTATTTTTACCTATATTTTTATATAATATTATTCTGGTGTATTCTTGTCGGCAGAGATGATTCTGGCAACAGAATCGTTTCCGTTGTAGGCAAAATTAGGCCAATAAATTCGGTGTGTCTTAAATTCTGTGTTCTTGTTGTCTTTTCTCTCTTTTAAGGTTTGTTGTGTCTCTAGGGCTGTTTTAGAGCAGTATGACTGCAAAATAAAAATTGAGCACCATGGGAGTAATAGTTTGGGGCGGAAAATGAAAATAATGAATTTTTGGAGAGCTGTGCATTTTTCCATTTTTTTTTCTCGCATAAACTGCAATCGTACTCTTTCAGGATTTTCGATGCTTCCTTATATGTTCTTCATAGTAACTATGTCTTGCTGTAGAGTCGATCTTTCGATCTTATGATCATTAGAAAAATACTTCCTTCTGGATCGTCAGAATCCTTAATTTCATCCTGTCTTGATTCTGTTAGTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTGTACCCTGCACATCTAACT</pcr_primer_p1>
		<pcr_primer_p2>GAACACAGAATTTAAGACACACC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TACTGTACCCTGCACATCTAACTGTCGACGCGAACCAAGGAAATGCGCCCGCTTTTGGGATCAATTTATACTCTTCAGTCATTCTCGTTTCTCCCCAAAAACCCATGTTTCTCGTTCCTATTTTTACCTATATTTTTATATAATATTATTCTGGTGTATTCTTGTCGGCAGAGATGATTCTGGCAACAGAATCGTTTCCGTTGTAGGCAAAATTAGGCCAATAAATTCGGTGTGTCTTAAATTCTGTGTTC</canonical_amplicon>
		<polymorphic_amplicon>TACTGTACCCTGCACATCTAACTGTCGACGCGAACCAAGGAAATGCGCCCGCTTTTGGGATCAATTTATACTCTTCAGTCATTCTCKTTTCTCCCCAAAAACCCATGTTTCTCGTTCCTATTTTTACCTATATTTTTATATAATATTATTCTGGTGTATTCTTGTCGGCAGAGATGATTCTGGCAACAGAATCGTTTCCGTTGTAGGCAAAATTAGGCCAATAAATTCGGTGTGTCTTAAATTCTGTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30375</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>168494</contig_pos>
        <strand>+</strand>
        <context>CATACTTCCA[A/T]TTTTTTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAAGGTGCAAAAATCAACGAACCGCTACATTCTATTATTCATACTTCCA</left_flank>
        <right_flank>TTTTTTTTTCGTTTAAATTTAAGCAAGGTGATGTAACGAAAAACAAAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGCAGTGTAATTGACGAAGAACGCGGCTCCGGGCATCTTCCAAACACTGTGATTATTGGGAAGCCACTCGACGACAAATGAGTCTAATGAGATGTTTTTGACTCGGAAAGTAGGAGCATCCGGAACTGAAAATTCGGGGAATTTAAGGTTTGATTAAAATCAATTCTTGTTTTTCAGAATAGGAAACATGTGACTTGAATTTCAGAGTCTTTTTAGAATTTTGAGGGATTCAGAATACTCACTTCTCGGTGGCCACGTCCTCACAGGTCTCAACGTCGTCGGCCCTTCTCCAGCTCTGGTTTCTGCCCAAACGGTTACTTTATATCCGGTATCAGGTTCACTTTTCTCATGTAGGTAGTATTTTTGTCGATGAATGACGTACGTTTCTTCGGTTTCATCTGAAAATTATTCATCTGGAAAACGATTAGGGAAACGCAGAAGAAATAAAGAAGGTGCAAAAATCAACGAACCGCTACATTCTATTATTCATACTTCCATTTTTTTTTTCGTTTAAATTTAAGCAAGGTGATGTAACGAAAAACAAAAGAAGATTATTGATAAGACGCCTGCTAACTCACTTTTATCATTTTGGAAAGAGATAAAATATCCTCTTATTCTTCCGTTTGGTTGCAAAGGAGCATCCCATTGAAGAAGAATTGCAGTCGATCCAACGGAATAAACACGAAGATTGTGAACTTTTCCAGGGGCTGAAAAACAATGGAGTGTCTTAAATATGATGTAAGATTTCTATTAGAAGGCCCTGATCTTATATTGTTTCAAGATACTTTTGGAGGACCCTACTTATACAGGGGACCTTCAATTAGAGGGGCCCTCCTATTTTTCGCTCATTTGTTTCCGAAAATTTAAATTTTAAAAATCTATGAATTTGTGTTTGAAATTCAAGACAATTCTAACAATTTCACCAAAATTGAGTAAGTTTTTGATTTTTCCCTTCCACTAAATATGGCCCTATTATTAAAGGGACCCTTCTAATACAG</canonical>
            <polymorphic>TCAGCAGTGTAATTGACGAAGAACGCGGCTCCGGGCATCTTCCAAACACTGTGATTATTGGGAAGCCACTCGACGACAAATGAGTCTAATGAGATGTTTTTGACTCGGAAAGTAGGAGCATCCGGAACTGAAAATTCGGGGAATTTAAGGTTTGATTAAAATCAATTCTTGTTTTTCAGAATAGGAAACATGTGACTTGAATTTCAGAGTCTTTTTAGAATTTTGAGGGATTCAGAATACTCACTTCTCGGTGGCCACGTCCTCACAGGTCTCAACGTCGTCGGCCCTTCTCCAGCTCTGGTTTCTGCCCAAACGGTTACTTTATATCCGGTATCAGGTTCACTTTTCTCATGTAGGTAGTATTTTTGTCGATGAATGACGTACGTTTCTTCGGTTTCATCTGAAAATTATTCATCTGGAAAACGATTAGGGAAACGCAGAAGAAATAAAGAAGGTGCAAAAATCAACGAACCGCTACATTCTATTATTCATACTTCCAWTTTTTTTTTCGTTTAAATTTAAGCAAGGTGATGTAACGAAAAACAAAAGAAGATTATTGATAAGACGCCTGCTAACTCACTTTTATCATTTTGGAAAGAGATAAAATATCCTCTTATTCTTCCGTTTGGTTGCAAAGGAGCATCCCATTGAAGAAGAATTGCAGTCGATCCAACGGAATAAACACGAAGATTGTGAACTTTTCCAGGGGCTGAAAAACAATGGAGTGTCTTAAATATGATGTAAGATTTCTATTAGAAGGCCCTGATCTTATATTGTTTCAAGATACTTTTGGAGGACCCTACTTATACAGGGGACCTTCAATTAGAGGGGCCCTCCTATTTTTCGCTCATTTGTTTCCGAAAATTTAAATTTTAAAAATCTATGAATTTGTGTTTGAAATTCAAGACAATTCTAACAATTTCACCAAAATTGAGTAAGTTTTTGATTTTTCCCTTCCACTAAATATGGCCCTATTATTAAAGGGACCCTTCTAATACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTATATCCGGTATCAGGTTC</pcr_primer_p1>
		<pcr_primer_p2>GCGTCTTATCAATAATCTTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTTATATCCGGTATCAGGTTCACTTTTCTCATGTAGGTAGTATTTTTGTCGATGAATGACGTACGTTTCTTCGGTTTCATCTGAAAATTATTCATCTGGAAAACGATTAGGGAAACGCAGAAGAAATAAAGAAGGTGCAAAAATCAACGAACCGCTACATTCTATTATTCATACTTCCATTTTTTTTTTCGTTTAAATTTAAGCAAGGTGATGTAACGAAAAACAAAAGAAGATTATTGATAAGACGC</canonical_amplicon>
		<polymorphic_amplicon>ACTTTATATCCGGTATCAGGTTCACTTTTCTCATGTAGGTAGTATTTTTGTCGATGAATGACGTACGTTTCTTCGGTTTCATCTGAAAATTATTCATCTGGAAAACGATTAGGGAAACGCAGAAGAAATAAAGAAGGTGCAAAAATCAACGAACCGCTACATTCTATTATTCATACTTCCAWTTTTTTTTTCGTTTAAATTTAAGCAAGGTGATGTAACGAAAAACAAAAGAAGATTATTGATAAGACGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30376</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>202977</contig_pos>
        <strand>+</strand>
        <context>GGGGTAGGTA[G/T]TAAACTCCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAGGATAAAAGTCAGTTGTCAGTCGATTGATGACGTCAATGGGGTAGGTA</left_flank>
        <right_flank>TAAACTCCATATGATAGGGGAGAAGAGAGGTTATTTTGGGGAACAATTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACAGTATTTCAAATGCTCATCCTGACCACGCATCCATTGAATTGTTGCAGAGTCACATTTTCGGTTAACCACTTTCACACTGAAAAAGAAAACAATGAATTTCTATAGAAGTTCGAATTTTCCAAACCTAGTGTCATCCGGAAGATTTGGATAAGGAGATTGGGCTGCGTTGGTGCTGGTCCAAACTCGGATAGTTTTTTTGGCATCATCATCATTGATGATCTGGTAACGAAGGTGTCCAGCTTTGAAATTGCTCACAACAAACCTGAAATTTCCTTTATTGTTTCCCCCATCATTTGTATGTTATCACACCTTTTGAATCCAGAAAATGATTCACTTCTTTTCAAAAGTTTTCCGTTCCTGAACAAATTGAGACGAATGAGTCCATCGCAAGCGTGCACAATGAGATATGCCTGCAAAAAGAGATAGATTGTGGAATGTGGAATTGAGGATAAAAGTCAGTTGTCAGTCGATTGATGACGTCAATGGGGTAGGTATTAAACTCCATATGATAGGGGAGAAGAGAGGTTATTTTGGGGAACAATTGAGAAGATAAAAATAGAACGAAAACGGATTGGATTTCCCATCTTTTTTGCTCGAATTGAGAAGTTGATGACGTCTTTTGAAAATTTGAAGAAAGCTATCAACTTTAGCTACCGTAAACTCTCTAATAGAACGCCTCGCAAACTTTGTGCCCTTATATCTCAGTTCTTGTGAAAGGTATCAAAAAGTAGTCCACTGACCAAATGCTTATCAAAATATGAAAATTATTTTATCAGCCAACAACTTTTCAATATCTTTCACAGGAACCGAGATAAATTCGCTCAAATTTGAAATGTTGGAGTGATTTCCTGATACGAAGCAGATAAGCTCGCACGCAACACACAGGATGTGGGAGAAAAACAGAAATTTCGTATAGAAATTTTGAAATCTTAAGCATATTCTTGAATTCATAGACATATAGCTCACCGTTTGTGATTGATTGCTCGGAAGAGGGT</canonical>
            <polymorphic>ACACAGTATTTCAAATGCTCATCCTGACCACGCATCCATTGAATTGTTGCAGAGTCACATTTTCGGTTAACCACTTTCACACTGAAAAAGAAAACAATGAATTTCTATAGAAGTTCGAATTTTCCAAACCTAGTGTCATCCGGAAGATTTGGATAAGGAGATTGGGCTGCGTTGGTGCTGGTCCAAACTCGGATAGTTTTTTTGGCATCATCATCATTGATGATCTGGTAACGAAGGTGTCCAGCTTTGAAATTGCTCACAACAAACCTGAAATTTCCTTTATTGTTTCCCCCATCATTTGTATGTTATCACACCTTTTGAATCCAGAAAATGATTCACTTCTTTTCAAAAGTTTTCCGTTCCTGAACAAATTGAGACGAATGAGTCCATCGCAAGCGTGCACAATGAGATATGCCTGCAAAAAGAGATAGATTGTGGAATGTGGAATTGAGGATAAAAGTCAGTTGTCAGTCGATTGATGACGTCAATGGGGTAGGTAKTAAACTCCATATGATAGGGGAGAAGAGAGGTTATTTTGGGGAACAATTGAGAAGATAAAAATAGAACGAAAACGGATTGGATTTCCCATCTTTTTTGCTCGAATTGAGAAGTTGATGACGTCTTTTGAAAATTTGAAGAAAGCTATCAACTTTAGCTACCGTAAACTCTCTAATAGAACGCCTCGCAAACTTTGTGCCCTTATATCTCAGTTCTTGTGAAAGGTATCAAAAAGTAGTCCACTGACCAAATGCTTATCAAAATATGAAAATTATTTTATCAGCCAACAACTTTTCAATATCTTTCACAGGAACCGAGATAAATTCGCTCAAATTTGAAATGTTGGAGTGATTTCCTGATACGAAGCAGATAAGCTCGCACGCAACACACAGGATGTGGGAGAAAAACAGAAATTTCGTATAGAAATTTTGAAATCTTAAGCATATTCTTGAATTCATAGACATATAGCTCACCGTTTGTGATTGATTGCTCGGAAGAGGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>435 433 67 65</canonical_bands>
                <polymorphic_bands>868 67 65</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATGATTCACTTCTTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>ATCCGTTTTCGTTCTATTTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAAAATGATTCACTTCTTTTCAAAAGTTTTCCGTTCCTGAACAAATTGAGACGAATGAGTCCATCGCAAGCGTGCACAATGAGATATGCCTGCAAAAAGAGATAGATTGTGGAATGTGGAATTGAGGATAAAAGTCAGTTGTCAGTCGATTGATGACGTCAATGGGGTAGGTATTAAACTCCATATGATAGGGGAGAAGAGAGGTTATTTTGGGGAACAATTGAGAAGATAAAAATAGAACGAAAACGGAT</canonical_amplicon>
		<polymorphic_amplicon>GAAAATGATTCACTTCTTTTCAAAAGTTTTCCGTTCCTGAACAAATTGAGACGAATGAGTCCATCGCAAGCGTGCACAATGAGATATGCCTGCAAAAAGAGATAGATTGTGGAATGTGGAATTGAGGATAAAAGTCAGTTGTCAGTCGATTGATGACGTCAATGGGGTAGGTAKTAAACTCCATATGATAGGGGAGAAGAGAGGTTATTTTGGGGAACAATTGAGAAGATAAAAATAGAACGAAAACGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30377</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>203271</contig_pos>
        <strand></strand>
        <context>aacaactttt[C/T]ratatctttc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCAAATGCTTATCAAAATATGAAAATTATTTTATCAGCCAACAACTTTT</left_flank>
        <right_flank>AATATCTTTCACAGGAACCGAGATAAATTCGCTCAAATTTGAAATGTTGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATTTGTATGTTATCACACCTTTTGAATCCAGAAAATGATTCACTTCTTTTCAAAAGTTTTCCGTTCCTGAACAAATTGAGACGAATGAGTCCATCGCAAGCGTGCACAATGAGATATGCCTGCAAAAAGAGATAGATTGTGGAATGTGGAATTGAGGATAAAAGTCAGTTGTCAGTCGATTGATGACGTCAATGGGGTAGGTATTAAACTCCATATGATAGGGGAGAAGAGAGGTTATTTTGGGGAACAATTGAGAAGATAAAAATAGAACGAAAACGGATTGGATTTCCCATCTTTTTTGCTCGAATTGAGAAGTTGATGACGTCTTTTGAAAATTTGAAGAAAGCTATCAACTTTAGCTACCGTAAACTCTCTAATAGAACGCCTCGCAAACTTTGTGCCCTTATATCTCAGTTCTTGTGAAAGGTATCAAAAAGTAGTCCACTGACCAAATGCTTATCAAAATATGAAAATTATTTTATCAGCCAACAACTTTTCAATATCTTTCACAGGAACCGAGATAAATTCGCTCAAATTTGAAATGTTGGAGTGATTTCCTGATACGAAGCAGATAAGCTCGCACGCAACACACAGGATGTGGGAGAAAAACAGAAATTTCGTATAGAAATTTTGAAATCTTAAGCATATTCTTGAATTCATAGACATATAGCTCACCGTTTGTGATTGATTGCTCGGAAGAGGGTGTACAAAGAACTTCATATTGAGTACAGATGCCTTCCGTGGTTCCAATTCAACTTGTCCCATGATCCCATCAGTTAATATGATTGGAGCATTTTTCTTCTGTTTTCTTGGAATATTTCTTGGCACTTTTCTACGAGATACCATTTCGTTGACTGGTGATGGTGGTGTTTGGATCGTTTGAACTTCATAAGCAGAGGAAGATCCTCGCTTCTGGTCTCTCACGAATACAGTTACGTAATAGGTTCTATCTCTCCATAATTGTCCCATAACAACTGAATTATTCATTTGTGGAACAC</canonical>
            <polymorphic>TCATTTGTATGTTATCACACCTTTTGAATCCAGAAAATGATTCACTTCTTTTCAAAAGTTTTCCGTTCCTGAACAAATTGAGACGAATGAGTCCATCGCAAGCGTGCACAATGAGATATGCCTGCAAAAAGAGATAGATTGTGGAATGTGGAATTGAGGATAAAAGTCAGTTGTCAGTCGATTGATGACGTCAATGGGGTAGGTATTAAACTCCATATGATAGGGGAGAAGAGAGGTTATTTTGGGGAACAATTGAGAAGATAAAAATAGAACGAAAACGGATTGGATTTCCCATCTTTTTTGCTCGAATTGAGAAGTTGATGACGTCTTTTGAAAATTTGAAGAAAGCTATCAACTTTAGCTACCGTAAACTCTCTAATAGAACGCCTCGCAAACTTTGTGCCCTTATATCTCAGTTCTTGTGAAAGGTATCAAAAAGTAGTCCACTGACCAAATGCTTATCAAAATATGAAAATTATTTTATCAGCCAACAACTTTTYAATATCTTTCACAGGAACCGAGATAAATTCGCTCAAATTTGAAATGTTGGAGTGATTTCCTGATACGAAGCAGATAAGCTCGCACGCAACACACAGGATGTGGGAGAAAAACAGAAATTTCGTATAGAAATTTTGAAATCTTAAGCATATTCTTGAATTCATAGACATATAGCTCACCGTTTGTGATTGATTGCTCGGAAGAGGGTGTACAAAGAACTTCATATTGAGTACAGATGCCTTCCGTGGTTCCAATTCAACTTGTCCCATGATCCCATCAGTTAATATGATTGGAGCATTTTTCTTCTGTTTTCTTGGAATATTTCTTGGCACTTTTCTACGAGATACCATTTCGTTGACTGGTGATGGTGGTGTTTGGATCGTTTGAACTTCATAAGCAGAGGAAGATCCTCGCTTCTGGTCTCTCACGAATACAGTTACGTAATAGGTTCTATCTCTCCATAATTGTCCCATAACAACTGAATTATTCATTTGTGGAACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAAAATTTGAAGAAAGCTA</pcr_primer_p1>
		<pcr_primer_p2>TATCTGCTTCGTATCAGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAAAATTTGAAGAAAGCTATCAACTTTAGCTACCGTAAACTCTCTAATAGAACGCCTCGCAAACTTTGTGCCCTTATATCTCAGTTCTTGTGAAAGGTATCAAAAAGTAGTCCACTGACCAAATGCTTATCAAAATATGAAAATTATTTTATCAGCCAACAACTTTTCAATATCTTTCACAGGAACCGAGATAAATTCGCTCAAATTTGAAATGTTGGAGTGATTTCCTGATACGAAGCAGATA</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAAAATTTGAAGAAAGCTATCAACTTTAGCTACCGTAAACTCTCTAATAGAACGCCTCGCAAACTTTGTGCCCTTATATCTCAGTTCTTGTGAAAGGTATCAAAAAGTAGTCCACTGACCAAATGCTTATCAAAATATGAAAATTATTTTATCAGCCAACAACTTTTYAATATCTTTCACAGGAACCGAGATAAATTCGCTCAAATTTGAAATGTTGGAGTGATTTCCTGATACGAAGCAGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30378</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>203272</contig_pos>
        <strand></strand>
        <context>acaactttty[A/G]atatctttca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAAATGCTTATCAAAATATGAAAATTATTTTATCAGCCAACAACTTTTC</left_flank>
        <right_flank>ATATCTTTCACAGGAACCGAGATAAATTCGCTCAAATTTGAAATGTTGGA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTGTATGTTATCACACCTTTTGAATCCAGAAAATGATTCACTTCTTTTCAAAAGTTTTCCGTTCCTGAACAAATTGAGACGAATGAGTCCATCGCAAGCGTGCACAATGAGATATGCCTGCAAAAAGAGATAGATTGTGGAATGTGGAATTGAGGATAAAAGTCAGTTGTCAGTCGATTGATGACGTCAATGGGGTAGGTATTAAACTCCATATGATAGGGGAGAAGAGAGGTTATTTTGGGGAACAATTGAGAAGATAAAAATAGAACGAAAACGGATTGGATTTCCCATCTTTTTTGCTCGAATTGAGAAGTTGATGACGTCTTTTGAAAATTTGAAGAAAGCTATCAACTTTAGCTACCGTAAACTCTCTAATAGAACGCCTCGCAAACTTTGTGCCCTTATATCTCAGTTCTTGTGAAAGGTATCAAAAAGTAGTCCACTGACCAAATGCTTATCAAAATATGAAAATTATTTTATCAGCCAACAACTTTTCAATATCTTTCACAGGAACCGAGATAAATTCGCTCAAATTTGAAATGTTGGAGTGATTTCCTGATACGAAGCAGATAAGCTCGCACGCAACACACAGGATGTGGGAGAAAAACAGAAATTTCGTATAGAAATTTTGAAATCTTAAGCATATTCTTGAATTCATAGACATATAGCTCACCGTTTGTGATTGATTGCTCGGAAGAGGGTGTACAAAGAACTTCATATTGAGTACAGATGCCTTCCGTGGTTCCAATTCAACTTGTCCCATGATCCCATCAGTTAATATGATTGGAGCATTTTTCTTCTGTTTTCTTGGAATATTTCTTGGCACTTTTCTACGAGATACCATTTCGTTGACTGGTGATGGTGGTGTTTGGATCGTTTGAACTTCATAAGCAGAGGAAGATCCTCGCTTCTGGTCTCTCACGAATACAGTTACGTAATAGGTTCTATCTCTCCATAATTGTCCCATAACAACTGAATTATTCATTTGTGGAACACA</canonical>
            <polymorphic>CATTTGTATGTTATCACACCTTTTGAATCCAGAAAATGATTCACTTCTTTTCAAAAGTTTTCCGTTCCTGAACAAATTGAGACGAATGAGTCCATCGCAAGCGTGCACAATGAGATATGCCTGCAAAAAGAGATAGATTGTGGAATGTGGAATTGAGGATAAAAGTCAGTTGTCAGTCGATTGATGACGTCAATGGGGTAGGTATTAAACTCCATATGATAGGGGAGAAGAGAGGTTATTTTGGGGAACAATTGAGAAGATAAAAATAGAACGAAAACGGATTGGATTTCCCATCTTTTTTGCTCGAATTGAGAAGTTGATGACGTCTTTTGAAAATTTGAAGAAAGCTATCAACTTTAGCTACCGTAAACTCTCTAATAGAACGCCTCGCAAACTTTGTGCCCTTATATCTCAGTTCTTGTGAAAGGTATCAAAAAGTAGTCCACTGACCAAATGCTTATCAAAATATGAAAATTATTTTATCAGCCAACAACTTTTCRATATCTTTCACAGGAACCGAGATAAATTCGCTCAAATTTGAAATGTTGGAGTGATTTCCTGATACGAAGCAGATAAGCTCGCACGCAACACACAGGATGTGGGAGAAAAACAGAAATTTCGTATAGAAATTTTGAAATCTTAAGCATATTCTTGAATTCATAGACATATAGCTCACCGTTTGTGATTGATTGCTCGGAAGAGGGTGTACAAAGAACTTCATATTGAGTACAGATGCCTTCCGTGGTTCCAATTCAACTTGTCCCATGATCCCATCAGTTAATATGATTGGAGCATTTTTCTTCTGTTTTCTTGGAATATTTCTTGGCACTTTTCTACGAGATACCATTTCGTTGACTGGTGATGGTGGTGTTTGGATCGTTTGAACTTCATAAGCAGAGGAAGATCCTCGCTTCTGGTCTCTCACGAATACAGTTACGTAATAGGTTCTATCTCTCCATAATTGTCCCATAACAACTGAATTATTCATTTGTGGAACACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAAAATTTGAAGAAAGCTA</pcr_primer_p1>
		<pcr_primer_p2>TATCTGCTTCGTATCAGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAAAATTTGAAGAAAGCTATCAACTTTAGCTACCGTAAACTCTCTAATAGAACGCCTCGCAAACTTTGTGCCCTTATATCTCAGTTCTTGTGAAAGGTATCAAAAAGTAGTCCACTGACCAAATGCTTATCAAAATATGAAAATTATTTTATCAGCCAACAACTTTTCAATATCTTTCACAGGAACCGAGATAAATTCGCTCAAATTTGAAATGTTGGAGTGATTTCCTGATACGAAGCAGATA</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAAAATTTGAAGAAAGCTATCAACTTTAGCTACCGTAAACTCTCTAATAGAACGCCTCGCAAACTTTGTGCCCTTATATCTCAGTTCTTGTGAAAGGTATCAAAAAGTAGTCCACTGACCAAATGCTTATCAAAATATGAAAATTATTTTATCAGCCAACAACTTTTCRATATCTTTCACAGGAACCGAGATAAATTCGCTCAAATTTGAAATGTTGGAGTGATTTCCTGATACGAAGCAGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30379</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>205641</contig_pos>
        <strand>+</strand>
        <context>TATCACTCAC[C/T]CGAAAAGTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCGAGAGATGACTCCTCTTATCTTCCTTATCTTTTTGTTATCACTCAC</left_flank>
        <right_flank>CGAAAAGTCAGTCAGGAGTAATACTATTAGAGTACGTGAGACGAAAAAAA</right_flank>
        <qual_score>148</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTATCAGCCCAAGTAATTGTGCGCCACCCAAAAACCATTTGGATGACTGAAAAGTATCATTGTTTAATGGGAACCCAGAATAGTTTAGCTTTACAAGGGTAACTGTAATAAAAAGTAGGAAATGATATCAAAACTTCGATGCCATAGTATAAAATTGTTATCAGGAATCATAAAAGTCAGAACACAAGAATTTTAGCTCTATCAAAAACTGTTCGAATGGGCTCGTTTCCTCTTCCCCTTCGGCGATTTTTGAATGAAATCATAAGAGGCGGGGCTGGGTTGTCCCTCCTGTGAAGGGACCCCAACGGGAGGTCAGACAACATTCCTCCGTCGTCGTCGTCTCGTTTCTCATTTCGTTATCTATCCACAACTCTCGGTGTCCGCCTAGAAAAAGCTGGAATGTTAGGAATGTGACAGTTGTCATTTCGATCCCAGCCAGCTCTCTTTCTTTCGAGAGATGACTCCTCTTATCTTCCTTATCTTTTTGTTATCACTCACTCGAAAAGTCAGTCAGGAGTAATACTATTAGAGTACGTGAGACGAAAAAAAAGAGAAAGAAAAGAATGAAAAAGAACATGAACAACGTCATAAAAATATTATGTTGCAGAATCGGAAGAAGAGAAGTTCCGTAGAGGAATGCGGAAAGTTGATTTAGAAGTTTAGAGTGAAGAGTACTGATGGATCAAAGCATCACAGGTGACTAGAGCTCACTAGCAACTCAAGAACAGATAAAAATCTAATCTAAATGTCCAGAGAGATCGGCGCTTACCATAAACACTCTGATAGAACGACACCCCTTTAACTTTCAAGCCGATTTATCCCGATTCCTGTGAAAGATGTCAAAAAATCGTAAACTGATAAAATGTTAATTATAATATCAAAAATATTTTGTCAGTTAGCCACTTTTTGATATCTTTCACAGGAAAGGAGATATATGGGCTCAAAGTTCAAAATTAGAGGAGGGGGAGGGCGTTCTATTTGAGTGTTTACGGTGTATGA</canonical>
            <polymorphic>TTTATCAGCCCAAGTAATTGTGCGCCACCCAAAAACCATTTGGATGACTGAAAAGTATCATTGTTTAATGGGAACCCAGAATAGTTTAGCTTTACAAGGGTAACTGTAATAAAAAGTAGGAAATGATATCAAAACTTCGATGCCATAGTATAAAATTGTTATCAGGAATCATAAAAGTCAGAACACAAGAATTTTAGCTCTATCAAAAACTGTTCGAATGGGCTCGTTTCCTCTTCCCCTTCGGCGATTTTTGAATGAAATCATAAGAGGCGGGGCTGGGTTGTCCCTCCTGTGAAGGGACCCCAACGGGAGGTCAGACAACATTCCTCCGTCGTCGTCGTCTCGTTTCTCATTTCGTTATCTATCCACAACTCTCGGTGTCCGCCTAGAAAAAGCTGGAATGTTAGGAATGTGACAGTTGTCATTTCGATCCCAGCCAGCTCTCTTTCTTTCGAGAGATGACTCCTCTTATCTTCCTTATCTTTTTGTTATCACTCACYCGAAAAGTCAGTCAGGAGTAATACTATTAGAGTACGTGAGACGAAAAAAAAGAGAAAGAAAAGAATGAAAAAGAACATGAACAACGTCATAAAAATATTATGTTGCAGAATCGGAAGAAGAGAAGTTCCGTAGAGGAATGCGGAAAGTTGATTTAGAAGTTTAGAGTGAAGAGTACTGATGGATCAAAGCATCACAGGTGACTAGAGCTCACTAGCAACTCAAGAACAGATAAAAATCTAATCTAAATGTCCAGAGAGATCGGCGCTTACCATAAACACTCTGATAGAACGACACCCCTTTAACTTTCAAGCCGATTTATCCCGATTCCTGTGAAAGATGTCAAAAAATCGTAAACTGATAAAATGTTAATTATAATATCAAAAATATTTTGTCAGTTAGCCACTTTTTGATATCTTTCACAGGAAAGGAGATATATGGGCTCAAAGTTCAAAATTAGAGGAGGGGGAGGGCGTTCTATTTGAGTGTTTACGGTGTATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 213 138 77 48 25</canonical_bands>
                <polymorphic_bands>547 213 138 77 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTCATTTCGTTATCTATCCAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTATGACGTTGTTCATGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTCATTTCGTTATCTATCCACAACTCTCGGTGTCCGCCTAGAAAAAGCTGGAATGTTAGGAATGTGACAGTTGTCATTTCGATCCCAGCCAGCTCTCTTTCTTTCGAGAGATGACTCCTCTTATCTTCCTTATCTTTTTGTTATCACTCACTCGAAAAGTCAGTCAGGAGTAATACTATTAGAGTACGTGAGACGAAAAAAAAGAGAAAGAAAAGAATGAAAAAGAACATGAACAACGTCATAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTCTCATTTCGTTATCTATCCACAACTCTCGGTGTCCGCCTAGAAAAAGCTGGAATGTTAGGAATGTGACAGTTGTCATTTCGATCCCAGCCAGCTCTCTTTCTTTCGAGAGATGACTCCTCTTATCTTCCTTATCTTTTTGTTATCACTCACYCGAAAAGTCAGTCAGGAGTAATACTATTAGAGTACGTGAGACGAAAAAAAAGAGAAAGAAAAGAATGAAAAAGAACATGAACAACGTCATAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30380</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>230144</contig_pos>
        <strand></strand>
        <context>aacccgtgtg[G/A]gcttctatta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATCTTTTACAGAAACTGAGATAATTGAGCTCAAAGTTGACAACCCGTGTG</left_flank>
        <right_flank>GCTTCTATTAGAGGAAATTCGGTATTTCTCATTGGTAATCCCCAGTTACT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACCATAACTTTCCAGATGAATTGATATGTTGGCACGGATGAAGAGATTTGTATCGAATTGAGAGAAATCCAACTGAAAATGATTTTATGATAGATGAATCCTGAAATGATCATTCGTCTACCTGCAGATCATAGTGGTACGGTAGAATATACAATGGTAGTGGAACTAATAAAGCATCAGTCGACAGTTTGTTTGATCTAACCGCATGAAGTTGTTCTGCGATTCCAAATCCGCCATCAGCCGGAGGTGGAAAAACATCCAATATCGTGAAGTTGCGTTTCTTTTCAAGCTGAAATAATTCCCATTTTGCTTTATTTTGCCCCATACCGGAACCGACAACTTTGAGCTCAATTATCTCGATTCCTATAAGAGATATCAGAATTTTGTCAACTCATAAAATATTGGTAATTTCATGATCAATAATTTATCAGTTGTCAAGTTTCTGATATCTTTTACAGAAACTGAGATAATTGAGCTCAAAGTTGACAACCCGTGTGGGCTTCTATTAGAGGAAATTCGGTATTTCTCATTGGTAATCCCCAGTTACTGTCCCATTTTCTTCAGGTTCCCACACCCCTAGTCTCAGTTGACAAAACCAAAAACTATTTAGCATAATCGTATTACAGTGAAATGTGTCCTTGATGTTAGTCATTTTTGCGGGTTTTTGGCAGTGTCACTGGGTGGCAGTAATTTGCATGCGAAATGGGTAAAATGAGTGAAATCGGAGGAGAGAAATCAGTGACGATGGTGGTGGTGATTGACAGTATAATTCGTCATTATGACACGGAAACCTATTACAATAATCTGTCAGTTTAGCAATTAGGCAGTGAGATTTATGATGCTTCCGTAGAAAGCTGTAGACATGGAAAAGATCTTTTTTTCTATCGAAAAGCCGTCACATAATAGTTTGAGAAGTTCTATAGGGTGGCGTAACCAGCACTAAAGTTTGAACTATCATACAGTTTGAGTAAGCATTGAACTGGGCTCAAATTTAGAGT</canonical>
            <polymorphic>TTACCATAACTTTCCAGATGAATTGATATGTTGGCACGGATGAAGAGATTTGTATCGAATTGAGAGAAATCCAACTGAAAATGATTTTATGATAGATGAATCCTGAAATGATCATTCGTCTACCTGCAGATCATAGTGGTACGGTAGAATATACAATGGTAGTGGAACTAATAAAGCATCAGTCGACAGTTTGTTTGATCTAACCGCATGAAGTTGTTCTGCGATTCCAAATCCGCCATCAGCCGGAGGTGGAAAAACATCCAATATCGTGAAGTTGCGTTTCTTTTCAAGCTGAAATAATTCCCATTTTGCTTTATTTTGCCCCATACCGGAACCGACAACTTTGAGCTCAATTATCTCGATTCCTATAAGAGATATCAGAATTTTGTCAACTCATAAAATATTGGTAATTTCATGATCAATAATTTATCAGTTGTCAAGTTTCTGATATCTTTTACAGAAACTGAGATAATTGAGCTCAAAGTTGACAACCCGTGTGRGCTTCTATTAGAGGAAATTCGGTATTTCTCATTGGTAATCCCCAGTTACTGTCCCATTTTCTTCAGGTTCCCACACCCCTAGTCTCAGTTGACAAAACCAAAAACTATTTAGCATAATCGTATTACAGTGAAATGTGTCCTTGATGTTAGTCATTTTTGCGGGTTTTTGGCAGTGTCACTGGGTGGCAGTAATTTGCATGCGAAATGGGTAAAATGAGTGAAATCGGAGGAGAGAAATCAGTGACGATGGTGGTGGTGATTGACAGTATAATTCGTCATTATGACACGGAAACCTATTACAATAATCTGTCAGTTTAGCAATTAGGCAGTGAGATTTATGATGCTTCCGTAGAAAGCTGTAGACATGGAAAAGATCTTTTTTTCTATCGAAAAGCCGTCACATAATAGTTTGAGAAGTTCTATAGGGTGGCGTAACCAGCACTAAAGTTTGAACTATCATACAGTTTGAGTAAGCATTGAACTGGGCTCAAATTTAGAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>355 242 129 92 57 49 38 24 14</canonical_bands>
                <polymorphic_bands>379 242 129 92 57 49 38 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAATTCCCATTTTGCTTTATTT</pcr_primer_p1>
		<pcr_primer_p2>TCAACTGAGACTAGGGGTGT</pcr_primer_p2>
		<pcr_amplicon_size>296</pcr_amplicon_size>
		<canonical_amplicon>ATAATTCCCATTTTGCTTTATTTTGCCCCATACCGGAACCGACAACTTTGAGCTCAATTATCTCGATTCCTATAAGAGATATCAGAATTTTGTCAACTCATAAAATATTGGTAATTTCATGATCAATAATTTATCAGTTGTCAAGTTTCTGATATCTTTTACAGAAACTGAGATAATTGAGCTCAAAGTTGACAACCCGTGTGGGCTTCTATTAGAGGAAATTCGGTATTTCTCATTGGTAATCCCCAGTTACTGTCCCATTTTCTTCAGGTTCCCACACCCCTAGTCTCAGTTGA</canonical_amplicon>
		<polymorphic_amplicon>ATAATTCCCATTTTGCTTTATTTTGCCCCATACCGGAACCGACAACTTTGAGCTCAATTATCTCGATTCCTATAAGAGATATCAGAATTTTGTCAACTCATAAAATATTGGTAATTTCATGATCAATAATTTATCAGTTGTCAAGTTTCTGATATCTTTTACAGAAACTGAGATAATTGAGCTCAAAGTTGACAACCCGTGTGRGCTTCTATTAGAGGAAATTCGGTATTTCTCATTGGTAATCCCCAGTTACTGTCCCATTTTCTTCAGGTTCCCACACCCCTAGTCTCAGTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30381</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>230159</contig_pos>
        <strand></strand>
        <context>ctattagagg[A/G]AATTCGGTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAGATAATTGAGCTCAAAGTTGACAACCCGTGTGGGCTTCTATTAGAGG</left_flank>
        <right_flank>AATTCGGTATTTCTCATTGGTAATCCCCAGTTACTGTCCCATTTTCTTCA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATGAATTGATATGTTGGCACGGATGAAGAGATTTGTATCGAATTGAGAGAAATCCAACTGAAAATGATTTTATGATAGATGAATCCTGAAATGATCATTCGTCTACCTGCAGATCATAGTGGTACGGTAGAATATACAATGGTAGTGGAACTAATAAAGCATCAGTCGACAGTTTGTTTGATCTAACCGCATGAAGTTGTTCTGCGATTCCAAATCCGCCATCAGCCGGAGGTGGAAAAACATCCAATATCGTGAAGTTGCGTTTCTTTTCAAGCTGAAATAATTCCCATTTTGCTTTATTTTGCCCCATACCGGAACCGACAACTTTGAGCTCAATTATCTCGATTCCTATAAGAGATATCAGAATTTTGTCAACTCATAAAATATTGGTAATTTCATGATCAATAATTTATCAGTTGTCAAGTTTCTGATATCTTTTACAGAAACTGAGATAATTGAGCTCAAAGTTGACAACCCGTGTGGGCTTCTATTAGAGGAAATTCGGTATTTCTCATTGGTAATCCCCAGTTACTGTCCCATTTTCTTCAGGTTCCCACACCCCTAGTCTCAGTTGACAAAACCAAAAACTATTTAGCATAATCGTATTACAGTGAAATGTGTCCTTGATGTTAGTCATTTTTGCGGGTTTTTGGCAGTGTCACTGGGTGGCAGTAATTTGCATGCGAAATGGGTAAAATGAGTGAAATCGGAGGAGAGAAATCAGTGACGATGGTGGTGGTGATTGACAGTATAATTCGTCATTATGACACGGAAACCTATTACAATAATCTGTCAGTTTAGCAATTAGGCAGTGAGATTTATGATGCTTCCGTAGAAAGCTGTAGACATGGAAAAGATCTTTTTTTCTATCGAAAAGCCGTCACATAATAGTTTGAGAAGTTCTATAGGGTGGCGTAACCAGCACTAAAGTTTGAACTATCATACAGTTTGAGTAAGCATTGAACTGGGCTCAAATTTAGAGTGCAGAAATTCAGATG</canonical>
            <polymorphic>AGATGAATTGATATGTTGGCACGGATGAAGAGATTTGTATCGAATTGAGAGAAATCCAACTGAAAATGATTTTATGATAGATGAATCCTGAAATGATCATTCGTCTACCTGCAGATCATAGTGGTACGGTAGAATATACAATGGTAGTGGAACTAATAAAGCATCAGTCGACAGTTTGTTTGATCTAACCGCATGAAGTTGTTCTGCGATTCCAAATCCGCCATCAGCCGGAGGTGGAAAAACATCCAATATCGTGAAGTTGCGTTTCTTTTCAAGCTGAAATAATTCCCATTTTGCTTTATTTTGCCCCATACCGGAACCGACAACTTTGAGCTCAATTATCTCGATTCCTATAAGAGATATCAGAATTTTGTCAACTCATAAAATATTGGTAATTTCATGATCAATAATTTATCAGTTGTCAAGTTTCTGATATCTTTTACAGAAACTGAGATAATTGAGCTCAAAGTTGACAACCCGTGTGGGCTTCTATTAGAGGRAATTCGGTATTTCTCATTGGTAATCCCCAGTTACTGTCCCATTTTCTTCAGGTTCCCACACCCCTAGTCTCAGTTGACAAAACCAAAAACTATTTAGCATAATCGTATTACAGTGAAATGTGTCCTTGATGTTAGTCATTTTTGCGGGTTTTTGGCAGTGTCACTGGGTGGCAGTAATTTGCATGCGAAATGGGTAAAATGAGTGAAATCGGAGGAGAGAAATCAGTGACGATGGTGGTGGTGATTGACAGTATAATTCGTCATTATGACACGGAAACCTATTACAATAATCTGTCAGTTTAGCAATTAGGCAGTGAGATTTATGATGCTTCCGTAGAAAGCTGTAGACATGGAAAAGATCTTTTTTTCTATCGAAAAGCCGTCACATAATAGTTTGAGAAGTTCTATAGGGTGGCGTAACCAGCACTAAAGTTTGAACTATCATACAGTTTGAGTAAGCATTGAACTGGGCTCAAATTTAGAGTGCAGAAATTCAGATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>475 366 134 15 10</canonical_bands>
                <polymorphic_bands>609 366 15 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAATTCCCATTTTGCTTTATTT</pcr_primer_p1>
		<pcr_primer_p2>TCAACTGAGACTAGGGGTGT</pcr_primer_p2>
		<pcr_amplicon_size>296</pcr_amplicon_size>
		<canonical_amplicon>ATAATTCCCATTTTGCTTTATTTTGCCCCATACCGGAACCGACAACTTTGAGCTCAATTATCTCGATTCCTATAAGAGATATCAGAATTTTGTCAACTCATAAAATATTGGTAATTTCATGATCAATAATTTATCAGTTGTCAAGTTTCTGATATCTTTTACAGAAACTGAGATAATTGAGCTCAAAGTTGACAACCCGTGTGGGCTTCTATTAGAGGAAATTCGGTATTTCTCATTGGTAATCCCCAGTTACTGTCCCATTTTCTTCAGGTTCCCACACCCCTAGTCTCAGTTGA</canonical_amplicon>
		<polymorphic_amplicon>ATAATTCCCATTTTGCTTTATTTTGCCCCATACCGGAACCGACAACTTTGAGCTCAATTATCTCGATTCCTATAAGAGATATCAGAATTTTGTCAACTCATAAAATATTGGTAATTTCATGATCAATAATTTATCAGTTGTCAAGTTTCTGATATCTTTTACAGAAACTGAGATAATTGAGCTCAAAGTTGACAACCCGTGTGGGCTTCTATTAGAGGRAATTCGGTATTTCTCATTGGTAATCCCCAGTTACTGTCCCATTTTCTTCAGGTTCCCACACCCCTAGTCTCAGTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30382</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>232202</contig_pos>
        <strand>+</strand>
        <context>TATTAATTGT[A/G]AGAGCGATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGATTTCTAAAGGTGAAAAGAGGGAGGAGAAAAATGTATATTAATTGT</left_flank>
        <right_flank>AGAGCGATTTTAGAAAAAAATGACTTTTTGAAGTGTAAGAAAAATGAGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACCACCAGATGTATGATTGTATAGAGAATCAAAATTCGAGATGTATAGTAGTTCTGAACAATAATAAAACAAAACTTAAAAATGAATTTAAAATTTGGATGCCAGTTGAAAAAATATTATATTTTGTTCGCACTTAATACCTCGAAAAAGTGGAAATTAGTGCAAATAAATGGTAGCAAAAAGAGGACGACAAACAACGGACAAATCCGCCGCAAAGCAATGGAAAATCCCTAGTAAAAACACTGTATCAAATTTCCAAATACACATTCACGAAGGAGTATCAAGACAAAGAAAATCTCTGGAAAACTGAGAGCTTGAAGAGAGAAAAAAGAAAGCAAAAAGAAGGGAAAGATATACATCTTCTAAAAGAATGCAAATGTTTCTATTGTTTTGAAAATGAATGAGGAGGCAAAAAAAGGAAGAGAAATGTAAAGAAAAAGGAGGTGGAGAAGATTTCTAAAGGTGAAAAGAGGGAGGAGAAAAATGTATATTAATTGTGAGAGCGATTTTAGAAAAAAATGACTTTTTGAAGTGTAAGAAAAATGAGATTTTGTGCTCTAATCGGTTATTTTGGTCTGTAGATTTTTTTTTAACTTTGGAATTTTTCCTTGGTTAATGGTTTTAGGTTTTTGGCCCTTTGAAGTTTCTGAAAAAATCAAAAACTCCAAATATCCAAGAATCCAAGAAAATGCTAACAATCTGATAGTTTCGAAAATTCGGAAACTTCAGTAAATTCAGATTTTCCGAAAAGAAATATATCAAAATTTTCAAAAAAAAATCAGAAAGTTGGAATAATCCAAAAAAAGTTGGCTTCTCTGAACTGTTCTAGAAAAGGAGGAAAATTCTAGAAACGAAAATTCTAGAAAGGAGAAAATTCTAAAAAAAATAATGTTTCCTGATTTTTTTCTCTTGTAACTGAATTTAACGAAGTTTTTGGATTTTCCAAATTATGGGATTTTTCAATTTTGATTTTTTTATAAATTTTTAATATTTCTATAA</canonical>
            <polymorphic>GACCACCAGATGTATGATTGTATAGAGAATCAAAATTCGAGATGTATAGTAGTTCTGAACAATAATAAAACAAAACTTAAAAATGAATTTAAAATTTGGATGCCAGTTGAAAAAATATTATATTTTGTTCGCACTTAATACCTCGAAAAAGTGGAAATTAGTGCAAATAAATGGTAGCAAAAAGAGGACGACAAACAACGGACAAATCCGCCGCAAAGCAATGGAAAATCCCTAGTAAAAACACTGTATCAAATTTCCAAATACACATTCACGAAGGAGTATCAAGACAAAGAAAATCTCTGGAAAACTGAGAGCTTGAAGAGAGAAAAAAGAAAGCAAAAAGAAGGGAAAGATATACATCTTCTAAAAGAATGCAAATGTTTCTATTGTTTTGAAAATGAATGAGGAGGCAAAAAAAGGAAGAGAAATGTAAAGAAAAAGGAGGTGGAGAAGATTTCTAAAGGTGAAAAGAGGGAGGAGAAAAATGTATATTAATTGTRAGAGCGATTTTAGAAAAAAATGACTTTTTGAAGTGTAAGAAAAATGAGATTTTGTGCTCTAATCGGTTATTTTGGTCTGTAGATTTTTTTTTAACTTTGGAATTTTTCCTTGGTTAATGGTTTTAGGTTTTTGGCCCTTTGAAGTTTCTGAAAAAATCAAAAACTCCAAATATCCAAGAATCCAAGAAAATGCTAACAATCTGATAGTTTCGAAAATTCGGAAACTTCAGTAAATTCAGATTTTCCGAAAAGAAATATATCAAAATTTTCAAAAAAAAATCAGAAAGTTGGAATAATCCAAAAAAAGTTGGCTTCTCTGAACTGTTCTAGAAAAGGAGGAAAATTCTAGAAACGAAAATTCTAGAAAGGAGAAAATTCTAAAAAAAATAATGTTTCCTGATTTTTTTCTCTTGTAACTGAATTTAACGAAGTTTTTGGATTTTCCAAATTATGGGATTTTTCAATTTTGATTTTTTTATAAATTTTTAATATTTCTATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>444 176 128 80 35 34 22 21 20 19 10 6 5</canonical_bands>
                <polymorphic_bands>444 176 128 80 69 22 21 20 19 10 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTAAAAGAATGCAAATGTTTC</pcr_primer_p1>
		<pcr_primer_p2>AAGGAAAAATTCCAAAGTTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTAAAAGAATGCAAATGTTTCTATTGTTTTGAAAATGAATGAGGAGGCAAAAAAAGGAAGAGAAATGTAAAGAAAAAGGAGGTGGAGAAGATTTCTAAAGGTGAAAAGAGGGAGGAGAAAAATGTATATTAATTGTGAGAGCGATTTTAGAAAAAAATGACTTTTTGAAGTGTAAGAAAAATGAGATTTTGTGCTCTAATCGGTTATTTTGGTCTGTAGATTTTTTTTTAACTTTGGAATTTTTCCTT</canonical_amplicon>
		<polymorphic_amplicon>TTCTAAAAGAATGCAAATGTTTCTATTGTTTTGAAAATGAATGAGGAGGCAAAAAAAGGAAGAGAAATGTAAAGAAAAAGGAGGTGGAGAAGATTTCTAAAGGTGAAAAGAGGGAGGAGAAAAATGTATATTAATTGTRAGAGCGATTTTAGAAAAAAATGACTTTTTGAAGTGTAAGAAAAATGAGATTTTGTGCTCTAATCGGTTATTTTGGTCTGTAGATTTTTTTTTAACTTTGGAATTTTTCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30383</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>265383</contig_pos>
        <strand>+</strand>
        <context>AACACAATCC[A/G]AAGACAATCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATCACCTGGGGTTCAATTTCCGCTAGAAATAACATCTAAACACAATCC</left_flank>
        <right_flank>AAGACAATCATTGCAGTATCGTCTATAATAGCCCTCGAAAAAAGACAATT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTAAAGAAAGAAACCAAAAAAAAACTGGCATCAACACAGAAGTACGGTACTATTTTTATAAGTTCTTTGATCTCGAAAAGCACAAAACATGACCAAATATGCAAAATTTTGAAAATTTTCATACGATTTTAGGGAGGCGAGGGTGTTAAATTTCGCGCAAATCGGATCAGTTTCTGTGTGAGGGTGGAGGGAGAGAGAGAGAAATGGAGGGAGTAGAACAGAGACAAAATTGAAATGCAAATGGACTGTGTCCAAAAAGAGAGAGAGAAAAAAACGATTAGTCTGACCTCTCCATTTTTGCCAATACCAATGAGGTTCTAAGCCGATTCGGCACATCACTTTGTTTGTATGGAAATGGTCATTCTGAAGAGGGCAACGGGTAGAAGATCTAACCCAAAAAATCAAGTGCATTGGCAAATATTGTCTCGGGGCCCTTTTTGATATAAGAAAATCACCTGGGGTTCAATTTCCGCTAGAAATAACATCTAAACACAATCCGAAGACAATCATTGCAGTATCGTCTATAATAGCCCTCGAAAAAAGACAATTGATGTCAATTTGAATAAATTGGCTCGTTTTTTCTCCCCAAAAGTGATGTTTCCTCTAATATCGTATCCTTAAGTCTAAAACAGTGGAACTAAAATTGTTAAGAAATAAATAATAAGAAGATTAGTATAAGCCAAAAGACTTTGCTTTTCTGAGCTGCAGAGGCAAGCTTCGGGGAAAAACATTCCAGTCACACTGATTAAAAAAGCATATCACCGGAAAGTAATCAAAATATCTTATAGATTCTGATTAGATTATTTTGGCTGTTCCGAGCTTGATTTTTACAAACTGCCTACTGTAGTTGATTCCTTCGAAAAAAACCAAACAAAAAAGAAGAAGAAGAAGACGATTCTAAACAAACTTGCACTATATGTCTTAACGTCTGGAGCATTTGGCTCTTTTCTTTTCTCTCTAACAGGTTGTGCAAAAGGGTATTGCGTGTGTCCCAGCCAG</canonical>
            <polymorphic>ACTAAAGAAAGAAACCAAAAAAAAACTGGCATCAACACAGAAGTACGGTACTATTTTTATAAGTTCTTTGATCTCGAAAAGCACAAAACATGACCAAATATGCAAAATTTTGAAAATTTTCATACGATTTTAGGGAGGCGAGGGTGTTAAATTTCGCGCAAATCGGATCAGTTTCTGTGTGAGGGTGGAGGGAGAGAGAGAGAAATGGAGGGAGTAGAACAGAGACAAAATTGAAATGCAAATGGACTGTGTCCAAAAAGAGAGAGAGAAAAAAACGATTAGTCTGACCTCTCCATTTTTGCCAATACCAATGAGGTTCTAAGCCGATTCGGCACATCACTTTGTTTGTATGGAAATGGTCATTCTGAAGAGGGCAACGGGTAGAAGATCTAACCCAAAAAATCAAGTGCATTGGCAAATATTGTCTCGGGGCCCTTTTTGATATAAGAAAATCACCTGGGGTTCAATTTCCGCTAGAAATAACATCTAAACACAATCCRAAGACAATCATTGCAGTATCGTCTATAATAGCCCTCGAAAAAAGACAATTGATGTCAATTTGAATAAATTGGCTCGTTTTTTCTCCCCAAAAGTGATGTTTCCTCTAATATCGTATCCTTAAGTCTAAAACAGTGGAACTAAAATTGTTAAGAAATAAATAATAAGAAGATTAGTATAAGCCAAAAGACTTTGCTTTTCTGAGCTGCAGAGGCAAGCTTCGGGGAAAAACATTCCAGTCACACTGATTAAAAAAGCATATCACCGGAAAGTAATCAAAATATCTTATAGATTCTGATTAGATTATTTTGGCTGTTCCGAGCTTGATTTTTACAAACTGCCTACTGTAGTTGATTCCTTCGAAAAAAACCAAACAAAAAAGAAGAAGAAGAAGACGATTCTAAACAAACTTGCACTATATGTCTTAACGTCTGGAGCATTTGGCTCTTTTCTTTTCTCTCTAACAGGTTGTGCAAAAGGGTATTGCGTGTGTCCCAGCCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>201 183 165 133 120 94 81 23</canonical_bands>
                <polymorphic_bands>334 183 165 120 94 81 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATCACTTTGTTTGTATGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAACGAGCCAATTTATTCA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CATCACTTTGTTTGTATGGAAATGGTCATTCTGAAGAGGGCAACGGGTAGAAGATCTAACCCAAAAAATCAAGTGCATTGGCAAATATTGTCTCGGGGCCCTTTTTGATATAAGAAAATCACCTGGGGTTCAATTTCCGCTAGAAATAACATCTAAACACAATCCGAAGACAATCATTGCAGTATCGTCTATAATAGCCCTCGAAAAAAGACAATTGATGTCAATTTGAATAAATTGGCTCGTTTT</canonical_amplicon>
		<polymorphic_amplicon>CATCACTTTGTTTGTATGGAAATGGTCATTCTGAAGAGGGCAACGGGTAGAAGATCTAACCCAAAAAATCAAGTGCATTGGCAAATATTGTCTCGGGGCCCTTTTTGATATAAGAAAATCACCTGGGGTTCAATTTCCGCTAGAAATAACATCTAAACACAATCCRAAGACAATCATTGCAGTATCGTCTATAATAGCCCTCGAAAAAAGACAATTGATGTCAATTTGAATAAATTGGCTCGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30384</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>265510</contig_pos>
        <strand>+</strand>
        <context>CCTTAAGTCT[A/G]AAACAGTGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTCTCCCCAAAAGTGATGTTTCCTCTAATATCGTATCCTTAAGTCT</left_flank>
        <right_flank>AAACAGTGGAACTAAAATTGTTAAGAAATAAATAATAAGAAGATTAGTAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTAGGGAGGCGAGGGTGTTAAATTTCGCGCAAATCGGATCAGTTTCTGTGTGAGGGTGGAGGGAGAGAGAGAGAAATGGAGGGAGTAGAACAGAGACAAAATTGAAATGCAAATGGACTGTGTCCAAAAAGAGAGAGAGAAAAAAACGATTAGTCTGACCTCTCCATTTTTGCCAATACCAATGAGGTTCTAAGCCGATTCGGCACATCACTTTGTTTGTATGGAAATGGTCATTCTGAAGAGGGCAACGGGTAGAAGATCTAACCCAAAAAATCAAGTGCATTGGCAAATATTGTCTCGGGGCCCTTTTTGATATAAGAAAATCACCTGGGGTTCAATTTCCGCTAGAAATAACATCTAAACACAATCCGAAGACAATCATTGCAGTATCGTCTATAATAGCCCTCGAAAAAAGACAATTGATGTCAATTTGAATAAATTGGCTCGTTTTTTCTCCCCAAAAGTGATGTTTCCTCTAATATCGTATCCTTAAGTCTAAAACAGTGGAACTAAAATTGTTAAGAAATAAATAATAAGAAGATTAGTATAAGCCAAAAGACTTTGCTTTTCTGAGCTGCAGAGGCAAGCTTCGGGGAAAAACATTCCAGTCACACTGATTAAAAAAGCATATCACCGGAAAGTAATCAAAATATCTTATAGATTCTGATTAGATTATTTTGGCTGTTCCGAGCTTGATTTTTACAAACTGCCTACTGTAGTTGATTCCTTCGAAAAAAACCAAACAAAAAAGAAGAAGAAGAAGACGATTCTAAACAAACTTGCACTATATGTCTTAACGTCTGGAGCATTTGGCTCTTTTCTTTTCTCTCTAACAGGTTGTGCAAAAGGGTATTGCGTGTGTCCCAGCCAGGCACTCATTTCTCTATTCTACTCTCTCGCCCCCGGAGACGCAGAGAAACGACGGACAGTTAGAGGAAATAGGAAATGAGAGGGAAAGGTCAACTAGAGAGATGAAAAAGATGTATGAGACAAACGCT</canonical>
            <polymorphic>TTTTAGGGAGGCGAGGGTGTTAAATTTCGCGCAAATCGGATCAGTTTCTGTGTGAGGGTGGAGGGAGAGAGAGAGAAATGGAGGGAGTAGAACAGAGACAAAATTGAAATGCAAATGGACTGTGTCCAAAAAGAGAGAGAGAAAAAAACGATTAGTCTGACCTCTCCATTTTTGCCAATACCAATGAGGTTCTAAGCCGATTCGGCACATCACTTTGTTTGTATGGAAATGGTCATTCTGAAGAGGGCAACGGGTAGAAGATCTAACCCAAAAAATCAAGTGCATTGGCAAATATTGTCTCGGGGCCCTTTTTGATATAAGAAAATCACCTGGGGTTCAATTTCCGCTAGAAATAACATCTAAACACAATCCGAAGACAATCATTGCAGTATCGTCTATAATAGCCCTCGAAAAAAGACAATTGATGTCAATTTGAATAAATTGGCTCGTTTTTTCTCCCCAAAAGTGATGTTTCCTCTAATATCGTATCCTTAAGTCTRAAACAGTGGAACTAAAATTGTTAAGAAATAAATAATAAGAAGATTAGTATAAGCCAAAAGACTTTGCTTTTCTGAGCTGCAGAGGCAAGCTTCGGGGAAAAACATTCCAGTCACACTGATTAAAAAAGCATATCACCGGAAAGTAATCAAAATATCTTATAGATTCTGATTAGATTATTTTGGCTGTTCCGAGCTTGATTTTTACAAACTGCCTACTGTAGTTGATTCCTTCGAAAAAAACCAAACAAAAAAGAAGAAGAAGAAGACGATTCTAAACAAACTTGCACTATATGTCTTAACGTCTGGAGCATTTGGCTCTTTTCTTTTCTCTCTAACAGGTTGTGCAAAAGGGTATTGCGTGTGTCCCAGCCAGGCACTCATTTCTCTATTCTACTCTCTCGCCCCCGGAGACGCAGAGAAACGACGGACAGTTAGAGGAAATAGGAAATGAGAGGGAAAGGTCAACTAGAGAGATGAAAAAGATGTATGAGACAAACGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAATCATTGCAGTATCGTCTA</pcr_primer_p1>
		<pcr_primer_p2>TTTAATCAGTGTGACTGGAATGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACAATCATTGCAGTATCGTCTATAATAGCCCTCGAAAAAAGACAATTGATGTCAATTTGAATAAATTGGCTCGTTTTTTCTCCCCAAAAGTGATGTTTCCTCTAATATCGTATCCTTAAGTCTAAAACAGTGGAACTAAAATTGTTAAGAAATAAATAATAAGAAGATTAGTATAAGCCAAAAGACTTTGCTTTTCTGAGCTGCAGAGGCAAGCTTCGGGGAAAAACATTCCAGTCACACTGATTAAA</canonical_amplicon>
		<polymorphic_amplicon>ACAATCATTGCAGTATCGTCTATAATAGCCCTCGAAAAAAGACAATTGATGTCAATTTGAATAAATTGGCTCGTTTTTTCTCCCCAAAAGTGATGTTTCCTCTAATATCGTATCCTTAAGTCTRAAACAGTGGAACTAAAATTGTTAAGAAATAAATAATAAGAAGATTAGTATAAGCCAAAAGACTTTGCTTTTCTGAGCTGCAGAGGCAAGCTTCGGGGAAAAACATTCCAGTCACACTGATTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30385</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>265540</contig_pos>
        <strand>+</strand>
        <context>GTTAAGAAAT[A/G]AATAATAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATATCGTATCCTTAAGTCTAAAACAGTGGAACTAAAATTGTTAAGAAAT</left_flank>
        <right_flank>AATAATAAGAAGATTAGTATAAGCCAAAAGACTTTGCTTTTCTGAGCTGC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAAATCGGATCAGTTTCTGTGTGAGGGTGGAGGGAGAGAGAGAGAAATGGAGGGAGTAGAACAGAGACAAAATTGAAATGCAAATGGACTGTGTCCAAAAAGAGAGAGAGAAAAAAACGATTAGTCTGACCTCTCCATTTTTGCCAATACCAATGAGGTTCTAAGCCGATTCGGCACATCACTTTGTTTGTATGGAAATGGTCATTCTGAAGAGGGCAACGGGTAGAAGATCTAACCCAAAAAATCAAGTGCATTGGCAAATATTGTCTCGGGGCCCTTTTTGATATAAGAAAATCACCTGGGGTTCAATTTCCGCTAGAAATAACATCTAAACACAATCCGAAGACAATCATTGCAGTATCGTCTATAATAGCCCTCGAAAAAAGACAATTGATGTCAATTTGAATAAATTGGCTCGTTTTTTCTCCCCAAAAGTGATGTTTCCTCTAATATCGTATCCTTAAGTCTAAAACAGTGGAACTAAAATTGTTAAGAAATAAATAATAAGAAGATTAGTATAAGCCAAAAGACTTTGCTTTTCTGAGCTGCAGAGGCAAGCTTCGGGGAAAAACATTCCAGTCACACTGATTAAAAAAGCATATCACCGGAAAGTAATCAAAATATCTTATAGATTCTGATTAGATTATTTTGGCTGTTCCGAGCTTGATTTTTACAAACTGCCTACTGTAGTTGATTCCTTCGAAAAAAACCAAACAAAAAAGAAGAAGAAGAAGACGATTCTAAACAAACTTGCACTATATGTCTTAACGTCTGGAGCATTTGGCTCTTTTCTTTTCTCTCTAACAGGTTGTGCAAAAGGGTATTGCGTGTGTCCCAGCCAGGCACTCATTTCTCTATTCTACTCTCTCGCCCCCGGAGACGCAGAGAAACGACGGACAGTTAGAGGAAATAGGAAATGAGAGGGAAAGGTCAACTAGAGAGATGAAAAAGATGTATGAGACAAACGCTTATTGCTTTTTGTTTTCCATAGTAGCGAGT</canonical>
            <polymorphic>GCAAATCGGATCAGTTTCTGTGTGAGGGTGGAGGGAGAGAGAGAGAAATGGAGGGAGTAGAACAGAGACAAAATTGAAATGCAAATGGACTGTGTCCAAAAAGAGAGAGAGAAAAAAACGATTAGTCTGACCTCTCCATTTTTGCCAATACCAATGAGGTTCTAAGCCGATTCGGCACATCACTTTGTTTGTATGGAAATGGTCATTCTGAAGAGGGCAACGGGTAGAAGATCTAACCCAAAAAATCAAGTGCATTGGCAAATATTGTCTCGGGGCCCTTTTTGATATAAGAAAATCACCTGGGGTTCAATTTCCGCTAGAAATAACATCTAAACACAATCCGAAGACAATCATTGCAGTATCGTCTATAATAGCCCTCGAAAAAAGACAATTGATGTCAATTTGAATAAATTGGCTCGTTTTTTCTCCCCAAAAGTGATGTTTCCTCTAATATCGTATCCTTAAGTCTAAAACAGTGGAACTAAAATTGTTAAGAAATRAATAATAAGAAGATTAGTATAAGCCAAAAGACTTTGCTTTTCTGAGCTGCAGAGGCAAGCTTCGGGGAAAAACATTCCAGTCACACTGATTAAAAAAGCATATCACCGGAAAGTAATCAAAATATCTTATAGATTCTGATTAGATTATTTTGGCTGTTCCGAGCTTGATTTTTACAAACTGCCTACTGTAGTTGATTCCTTCGAAAAAAACCAAACAAAAAAGAAGAAGAAGAAGACGATTCTAAACAAACTTGCACTATATGTCTTAACGTCTGGAGCATTTGGCTCTTTTCTTTTCTCTCTAACAGGTTGTGCAAAAGGGTATTGCGTGTGTCCCAGCCAGGCACTCATTTCTCTATTCTACTCTCTCGCCCCCGGAGACGCAGAGAAACGACGGACAGTTAGAGGAAATAGGAAATGAGAGGGAAAGGTCAACTAGAGAGATGAAAAAGATGTATGAGACAAACGCTTATTGCTTTTTGTTTTCCATAGTAGCGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAATCATTGCAGTATCGTCTA</pcr_primer_p1>
		<pcr_primer_p2>TTTAATCAGTGTGACTGGAATGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACAATCATTGCAGTATCGTCTATAATAGCCCTCGAAAAAAGACAATTGATGTCAATTTGAATAAATTGGCTCGTTTTTTCTCCCCAAAAGTGATGTTTCCTCTAATATCGTATCCTTAAGTCTAAAACAGTGGAACTAAAATTGTTAAGAAATAAATAATAAGAAGATTAGTATAAGCCAAAAGACTTTGCTTTTCTGAGCTGCAGAGGCAAGCTTCGGGGAAAAACATTCCAGTCACACTGATTAAA</canonical_amplicon>
		<polymorphic_amplicon>ACAATCATTGCAGTATCGTCTATAATAGCCCTCGAAAAAAGACAATTGATGTCAATTTGAATAAATTGGCTCGTTTTTTCTCCCCAAAAGTGATGTTTCCTCTAATATCGTATCCTTAAGTCTAAAACAGTGGAACTAAAATTGTTAAGAAATRAATAATAAGAAGATTAGTATAAGCCAAAAGACTTTGCTTTTCTGAGCTGCAGAGGCAAGCTTCGGGGAAAAACATTCCAGTCACACTGATTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30386</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>265711</contig_pos>
        <strand>+</strand>
        <context>GAGCTTGATT[C/T]TTACAAACTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATATCTTATAGATTCTGATTAGATTATTTTGGCTGTTCCGAGCTTGATT</left_flank>
        <right_flank>TTACAAACTGCCTACTGTAGTTGATTCCTTCGAAAAAAACCAAACAAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGCACATCACTTTGTTTGTATGGAAATGGTCATTCTGAAGAGGGCAACGGGTAGAAGATCTAACCCAAAAAATCAAGTGCATTGGCAAATATTGTCTCGGGGCCCTTTTTGATATAAGAAAATCACCTGGGGTTCAATTTCCGCTAGAAATAACATCTAAACACAATCCGAAGACAATCATTGCAGTATCGTCTATAATAGCCCTCGAAAAAAGACAATTGATGTCAATTTGAATAAATTGGCTCGTTTTTTCTCCCCAAAAGTGATGTTTCCTCTAATATCGTATCCTTAAGTCTAAAACAGTGGAACTAAAATTGTTAAGAAATAAATAATAAGAAGATTAGTATAAGCCAAAAGACTTTGCTTTTCTGAGCTGCAGAGGCAAGCTTCGGGGAAAAACATTCCAGTCACACTGATTAAAAAAGCATATCACCGGAAAGTAATCAAAATATCTTATAGATTCTGATTAGATTATTTTGGCTGTTCCGAGCTTGATTTTTACAAACTGCCTACTGTAGTTGATTCCTTCGAAAAAAACCAAACAAAAAAGAAGAAGAAGAAGACGATTCTAAACAAACTTGCACTATATGTCTTAACGTCTGGAGCATTTGGCTCTTTTCTTTTCTCTCTAACAGGTTGTGCAAAAGGGTATTGCGTGTGTCCCAGCCAGGCACTCATTTCTCTATTCTACTCTCTCGCCCCCGGAGACGCAGAGAAACGACGGACAGTTAGAGGAAATAGGAAATGAGAGGGAAAGGTCAACTAGAGAGATGAAAAAGATGTATGAGACAAACGCTTATTGCTTTTTGTTTTCCATAGTAGCGAGTACATGAGAAGAAGAGATTTAGAGTGGATGGGTAGATAAGAGCATTACAGACTAAGAGGAGCAGAAAAAGGCCTGTTGTTGTTGTTATCGATTAGCTCTGGTCGCGCCTTCATGTGTGTCTGTGCCCAACAGACGCAGTTTGGTTTGCTGTCGTCGTTTTTTTTTCTACTGC</canonical>
            <polymorphic>TCGGCACATCACTTTGTTTGTATGGAAATGGTCATTCTGAAGAGGGCAACGGGTAGAAGATCTAACCCAAAAAATCAAGTGCATTGGCAAATATTGTCTCGGGGCCCTTTTTGATATAAGAAAATCACCTGGGGTTCAATTTCCGCTAGAAATAACATCTAAACACAATCCGAAGACAATCATTGCAGTATCGTCTATAATAGCCCTCGAAAAAAGACAATTGATGTCAATTTGAATAAATTGGCTCGTTTTTTCTCCCCAAAAGTGATGTTTCCTCTAATATCGTATCCTTAAGTCTAAAACAGTGGAACTAAAATTGTTAAGAAATAAATAATAAGAAGATTAGTATAAGCCAAAAGACTTTGCTTTTCTGAGCTGCAGAGGCAAGCTTCGGGGAAAAACATTCCAGTCACACTGATTAAAAAAGCATATCACCGGAAAGTAATCAAAATATCTTATAGATTCTGATTAGATTATTTTGGCTGTTCCGAGCTTGATTYTTACAAACTGCCTACTGTAGTTGATTCCTTCGAAAAAAACCAAACAAAAAAGAAGAAGAAGAAGACGATTCTAAACAAACTTGCACTATATGTCTTAACGTCTGGAGCATTTGGCTCTTTTCTTTTCTCTCTAACAGGTTGTGCAAAAGGGTATTGCGTGTGTCCCAGCCAGGCACTCATTTCTCTATTCTACTCTCTCGCCCCCGGAGACGCAGAGAAACGACGGACAGTTAGAGGAAATAGGAAATGAGAGGGAAAGGTCAACTAGAGAGATGAAAAAGATGTATGAGACAAACGCTTATTGCTTTTTGTTTTCCATAGTAGCGAGTACATGAGAAGAAGAGATTTAGAGTGGATGGGTAGATAAGAGCATTACAGACTAAGAGGAGCAGAAAAAGGCCTGTTGTTGTTGTTATCGATTAGCTCTGGTCGCGCCTTCATGTGTGTCTGTGCCCAACAGACGCAGTTTGGTTTGCTGTCGTCGTTTTTTTTTCTACTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACATTCCAGTCACACTGATTA</pcr_primer_p1>
		<pcr_primer_p2>CACAACCTGTTAGAGAGAAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAACATTCCAGTCACACTGATTAAAAAAGCATATCACCGGAAAGTAATCAAAATATCTTATAGATTCTGATTAGATTATTTTGGCTGTTCCGAGCTTGATTTTTACAAACTGCCTACTGTAGTTGATTCCTTCGAAAAAAACCAAACAAAAAAGAAGAAGAAGAAGACGATTCTAAACAAACTTGCACTATATGTCTTAACGTCTGGAGCATTTGGCTCTTTTCTTTTCTCTCTAACAGGTTGTG</canonical_amplicon>
		<polymorphic_amplicon>AAACATTCCAGTCACACTGATTAAAAAAGCATATCACCGGAAAGTAATCAAAATATCTTATAGATTCTGATTAGATTATTTTGGCTGTTCCGAGCTTGATTYTTACAAACTGCCTACTGTAGTTGATTCCTTCGAAAAAAACCAAACAAAAAAGAAGAAGAAGAAGACGATTCTAAACAAACTTGCACTATATGTCTTAACGTCTGGAGCATTTGGCTCTTTTCTTTTCTCTCTAACAGGTTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30387</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>265757</contig_pos>
        <strand>+</strand>
        <context>AAAACCAAAC[A/G]AAAAAGAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTTTTACAAACTGCCTACTGTAGTTGATTCCTTCGAAAAAAACCAAAC</left_flank>
        <right_flank>AAAAAGAAGAAGAAGAAGACGATTCTAAACAAACTTGCACTATATGTCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACGGGTAGAAGATCTAACCCAAAAAATCAAGTGCATTGGCAAATATTGTCTCGGGGCCCTTTTTGATATAAGAAAATCACCTGGGGTTCAATTTCCGCTAGAAATAACATCTAAACACAATCCGAAGACAATCATTGCAGTATCGTCTATAATAGCCCTCGAAAAAAGACAATTGATGTCAATTTGAATAAATTGGCTCGTTTTTTCTCCCCAAAAGTGATGTTTCCTCTAATATCGTATCCTTAAGTCTAAAACAGTGGAACTAAAATTGTTAAGAAATAAATAATAAGAAGATTAGTATAAGCCAAAAGACTTTGCTTTTCTGAGCTGCAGAGGCAAGCTTCGGGGAAAAACATTCCAGTCACACTGATTAAAAAAGCATATCACCGGAAAGTAATCAAAATATCTTATAGATTCTGATTAGATTATTTTGGCTGTTCCGAGCTTGATTTTTACAAACTGCCTACTGTAGTTGATTCCTTCGAAAAAAACCAAACAAAAAAGAAGAAGAAGAAGACGATTCTAAACAAACTTGCACTATATGTCTTAACGTCTGGAGCATTTGGCTCTTTTCTTTTCTCTCTAACAGGTTGTGCAAAAGGGTATTGCGTGTGTCCCAGCCAGGCACTCATTTCTCTATTCTACTCTCTCGCCCCCGGAGACGCAGAGAAACGACGGACAGTTAGAGGAAATAGGAAATGAGAGGGAAAGGTCAACTAGAGAGATGAAAAAGATGTATGAGACAAACGCTTATTGCTTTTTGTTTTCCATAGTAGCGAGTACATGAGAAGAAGAGATTTAGAGTGGATGGGTAGATAAGAGCATTACAGACTAAGAGGAGCAGAAAAAGGCCTGTTGTTGTTGTTATCGATTAGCTCTGGTCGCGCCTTCATGTGTGTCTGTGCCCAACAGACGCAGTTTGGTTTGCTGTCGTCGTTTTTTTTTCTACTGCCTTCACACATCTTGAAAATAATATGAAAGAAGAAGAGACACAGACA</canonical>
            <polymorphic>CAACGGGTAGAAGATCTAACCCAAAAAATCAAGTGCATTGGCAAATATTGTCTCGGGGCCCTTTTTGATATAAGAAAATCACCTGGGGTTCAATTTCCGCTAGAAATAACATCTAAACACAATCCGAAGACAATCATTGCAGTATCGTCTATAATAGCCCTCGAAAAAAGACAATTGATGTCAATTTGAATAAATTGGCTCGTTTTTTCTCCCCAAAAGTGATGTTTCCTCTAATATCGTATCCTTAAGTCTAAAACAGTGGAACTAAAATTGTTAAGAAATAAATAATAAGAAGATTAGTATAAGCCAAAAGACTTTGCTTTTCTGAGCTGCAGAGGCAAGCTTCGGGGAAAAACATTCCAGTCACACTGATTAAAAAAGCATATCACCGGAAAGTAATCAAAATATCTTATAGATTCTGATTAGATTATTTTGGCTGTTCCGAGCTTGATTTTTACAAACTGCCTACTGTAGTTGATTCCTTCGAAAAAAACCAAACRAAAAAGAAGAAGAAGAAGACGATTCTAAACAAACTTGCACTATATGTCTTAACGTCTGGAGCATTTGGCTCTTTTCTTTTCTCTCTAACAGGTTGTGCAAAAGGGTATTGCGTGTGTCCCAGCCAGGCACTCATTTCTCTATTCTACTCTCTCGCCCCCGGAGACGCAGAGAAACGACGGACAGTTAGAGGAAATAGGAAATGAGAGGGAAAGGTCAACTAGAGAGATGAAAAAGATGTATGAGACAAACGCTTATTGCTTTTTGTTTTCCATAGTAGCGAGTACATGAGAAGAAGAGATTTAGAGTGGATGGGTAGATAAGAGCATTACAGACTAAGAGGAGCAGAAAAAGGCCTGTTGTTGTTGTTATCGATTAGCTCTGGTCGCGCCTTCATGTGTGTCTGTGCCCAACAGACGCAGTTTGGTTTGCTGTCGTCGTTTTTTTTTCTACTGCCTTCACACATCTTGAAAATAATATGAAAGAAGAAGAGACACAGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACATTCCAGTCACACTGATTA</pcr_primer_p1>
		<pcr_primer_p2>CACAACCTGTTAGAGAGAAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAACATTCCAGTCACACTGATTAAAAAAGCATATCACCGGAAAGTAATCAAAATATCTTATAGATTCTGATTAGATTATTTTGGCTGTTCCGAGCTTGATTTTTACAAACTGCCTACTGTAGTTGATTCCTTCGAAAAAAACCAAACAAAAAAGAAGAAGAAGAAGACGATTCTAAACAAACTTGCACTATATGTCTTAACGTCTGGAGCATTTGGCTCTTTTCTTTTCTCTCTAACAGGTTGTG</canonical_amplicon>
		<polymorphic_amplicon>AAACATTCCAGTCACACTGATTAAAAAAGCATATCACCGGAAAGTAATCAAAATATCTTATAGATTCTGATTAGATTATTTTGGCTGTTCCGAGCTTGATTTTTACAAACTGCCTACTGTAGTTGATTCCTTCGAAAAAAACCAAACRAAAAAGAAGAAGAAGAAGACGATTCTAAACAAACTTGCACTATATGTCTTAACGTCTGGAGCATTTGGCTCTTTTCTTTTCTCTCTAACAGGTTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30388</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>280393</contig_pos>
        <strand>+</strand>
        <context>CATACTTGAT[A/G]TGTGgtattg</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTTCCACTGAACTGTATGCATTCTGTTCGTACCTGAAAACATACTTGAT</left_flank>
        <right_flank>TGTGGTATTGTATTGTATTGTATTTATTACGTAAGAAATAAGTGGAAAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAGACCTTCGACCACGGCCACCAAAGTTTCTCTTTTCAAACTATGTTTCAATCAGAATAATAATAATAATAATACTCACTCTCTGAAAATGATTTTTTCAAAATGTACTGTATTCTGTCGTTCTCCGTGGCTATTATAAAAGTGTGAAGAAATGGACAAATAGATTTCGTCAGCTTTCCGCACAGCTTCAATTGTTATACCCAATGGTCCTAGATTTCGCAAGTATTTGATATCCGGCTAAAAGCAATTCCGTAATAATTTCTCCCTAAAATAACAGGAAAGCATACCCTAGTTTCAGTCATTGCTCTCGTTGTCATATATGATGGTTCCGGTGGGTTTCTCGTGGGATTTAGGTGATGGAGAAATTTAAGGAATGGGGGATCGTTGATAGTTTCTAGCGATCTCCCATTTCCCAAAAAGAATCTCATCGCCAGCTCTTCATTATATCGTTCCACTGAACTGTATGCATTCTGTTCGTACCTGAAAACATACTTGATGTGTGGTATTGTATTGTATTGTATTTATTACGTAAGAAATAAGTGGAAAAATAAAAAGAATGAAAAAGAGAATAAGTAGACAAAAAGGGACATGGTGACATAAAAATGATATTTCTTAACCTAGACATGAATAATGGTGGATAATAACAAATCTTTTTCCGAACTTCTGACAGCAGCAGGCTTTTAGATCCGTTTTGTAGAGCTCATCATTTTACTAAGAACCCAATGTGTGAAGAAGTTTTGTTTAAGTTTAGACTTTGGAGTTTTCCATTGGTAGGTGTGGCGACTGCGCGTTTTTGTCGATCTAATTTTTAAATATGATAAATGATTATTATTAATTTTACCTAGAATGAGTTTGTTGAAAAATTTCAGATCAAGCTTTTCCCGTCTAGATTGTAGTGATTCTAGGCTGAATTCGTACAATCTGTCTAGAGATGTTTTGTAATCCTTATCAATTCTCGTTAAGTTTCTACCCACTATTCTATTCTTCAATTTTCTAGT</canonical>
            <polymorphic>TTGAGACCTTCGACCACGGCCACCAAAGTTTCTCTTTTCAAACTATGTTTCAATCAGAATAATAATAATAATAATACTCACTCTCTGAAAATGATTTTTTCAAAATGTACTGTATTCTGTCGTTCTCCGTGGCTATTATAAAAGTGTGAAGAAATGGACAAATAGATTTCGTCAGCTTTCCGCACAGCTTCAATTGTTATACCCAATGGTCCTAGATTTCGCAAGTATTTGATATCCGGCTAAAAGCAATTCCGTAATAATTTCTCCCTAAAATAACAGGAAAGCATACCCTAGTTTCAGTCATTGCTCTCGTTGTCATATATGATGGTTCCGGTGGGTTTCTCGTGGGATTTAGGTGATGGAGAAATTTAAGGAATGGGGGATCGTTGATAGTTTCTAGCGATCTCCCATTTCCCAAAAAGAATCTCATCGCCAGCTCTTCATTATATCGTTCCACTGAACTGTATGCATTCTGTTCGTACCTGAAAACATACTTGATRTGTGGTATTGTATTGTATTGTATTTATTACGTAAGAAATAAGTGGAAAAATAAAAAGAATGAAAAAGAGAATAAGTAGACAAAAAGGGACATGGTGACATAAAAATGATATTTCTTAACCTAGACATGAATAATGGTGGATAATAACAAATCTTTTTCCGAACTTCTGACAGCAGCAGGCTTTTAGATCCGTTTTGTAGAGCTCATCATTTTACTAAGAACCCAATGTGTGAAGAAGTTTTGTTTAAGTTTAGACTTTGGAGTTTTCCATTGGTAGGTGTGGCGACTGCGCGTTTTTGTCGATCTAATTTTTAAATATGATAAATGATTATTATTAATTTTACCTAGAATGAGTTTGTTGAAAAATTTCAGATCAAGCTTTTCCCGTCTAGATTGTAGTGATTCTAGGCTGAATTCGTACAATCTGTCTAGAGATGTTTTGTAATCCTTATCAATTCTCGTTAAGTTTCTACCCACTATTCTATTCTTCAATTTTCTAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>152 119 98 91 75 58 52 51 48 46 42 40 36 25 16 15 11 11 6 2 2 2 2</canonical_bands>
                <polymorphic_bands>152 119 98 91 75 58 52 51 48 48 42 40 36 25 16 15 11 11 6 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGATAGTTTCTAGCGATCTCC</pcr_primer_p1>
		<pcr_primer_p2>CCATTATTCATGTCTAGGTTAAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGATAGTTTCTAGCGATCTCCCATTTCCCAAAAAGAATCTCATCGCCAGCTCTTCATTATATCGTTCCACTGAACTGTATGCATTCTGTTCGTACCTGAAAACATACTTGATGTGTGGTATTGTATTGTATTGTATTTATTACGTAAGAAATAAGTGGAAAAATAAAAAGAATGAAAAAGAGAATAAGTAGACAAAAAGGGACATGGTGACATAAAAATGATATTTCTTAACCTAGACATGAATAATGG</canonical_amplicon>
		<polymorphic_amplicon>TTGATAGTTTCTAGCGATCTCCCATTTCCCAAAAAGAATCTCATCGCCAGCTCTTCATTATATCGTTCCACTGAACTGTATGCATTCTGTTCGTACCTGAAAACATACTTGATRTGTGGTATTGTATTGTATTGTATTTATTACGTAAGAAATAAGTGGAAAAATAAAAAGAATGAAAAAGAGAATAAGTAGACAAAAAGGGACATGGTGACATAAAAATGATATTTCTTAACCTAGACATGAATAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30389</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>366441</contig_pos>
        <strand>+</strand>
        <context>GGTCATTATC[A/C]ACGTTGAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGCTGCCTGATGACATGTATTTTTCCCTCTGTTTTATTGGGGTCATTATC</left_flank>
        <right_flank>ACGTTGAATCTGATTTCCGATGAATCTGTTTATCTTCGGTAACGTTGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGGACGTCTTGATTTCCGCGTTGTAGTAGGAATAGAGCAGTTCTGTACAGATTGACAAAAACTGTAATCCTCATTACTCTCGTACGTGTAAGAACAGGAGGGTTTCTGTTCATCGATCATCTCCTTCTTAACAGACGAATTTGCAGAATTCTTTGAAGTATCTTTGGTGCATTCTAATTTGCGAGCTGCTTTCGAAGAACGAGAAGGTTTTGTTTTCTGTGCAACATTCTCTGTTTCTGGTGCCGTGCTCAGTTTCATCGGGGTAGGGTTTTTACGACGGTTCGAACTCTAAAATGTCTCGAATATGAAAAATAACTGAAAAGATAATGAAACCTACCTTGACGTAATTGAGTTTCTCTACAAGCTCTTCAACATGTGCGGTATTCATCTTTATCGTACGTCCATCTGGCCCTTTTCCAATATCTACGTACTCGGGTTTATCGTCGTGGCTGCCTGATGACATGTATTTTTCCCTCTGTTTTATTGGGGTCATTATCAACGTTGAATCTGATTTCCGATGAATCTGTTTATCTTCGGTAACGTTGAAAACTTTTTTGAATTCACGGAACCATCCTGGTTGAGATACTGAAGGCCATGTATAAATCGGAGAGTCGGTTTGTCTCCATGTCTTAGCAGGTATTGTTATTTTGGAAATTCCCTGTTCTGCTGCCTGGAAATTGAATAATTGAAAAAATATATGTGTTAGCGTAATTCTTACCTGAATGATTTGATGAATCGGGTTTTTACTCTCTTTTCTCATTGATTTCAAATGAGACCGAATTTTGTAGGGATCCCTTGCGGGCAGACAATGCTTGTGAATCATTGTGTATCTATCAGGAACTTCTTTATCAGCGCGCCTGGGAAGATGATGAAACTGAAGTATTGCGACTGCCAACATAACATCTTCTTCGTTCAGGAACGGTAGTGGTTTTTCAATATAAATCGGTTGGCACGGTGGTAGTAGTCCAGGATAGCGGATAGCTTCACTTCTAGAAAGC</canonical>
            <polymorphic>TGAGGACGTCTTGATTTCCGCGTTGTAGTAGGAATAGAGCAGTTCTGTACAGATTGACAAAAACTGTAATCCTCATTACTCTCGTACGTGTAAGAACAGGAGGGTTTCTGTTCATCGATCATCTCCTTCTTAACAGACGAATTTGCAGAATTCTTTGAAGTATCTTTGGTGCATTCTAATTTGCGAGCTGCTTTCGAAGAACGAGAAGGTTTTGTTTTCTGTGCAACATTCTCTGTTTCTGGTGCCGTGCTCAGTTTCATCGGGGTAGGGTTTTTACGACGGTTCGAACTCTAAAATGTCTCGAATATGAAAAATAACTGAAAAGATAATGAAACCTACCTTGACGTAATTGAGTTTCTCTACAAGCTCTTCAACATGTGCGGTATTCATCTTTATCGTACGTCCATCTGGCCCTTTTCCAATATCTACGTACTCGGGTTTATCGTCGTGGCTGCCTGATGACATGTATTTTTCCCTCTGTTTTATTGGGGTCATTATCMACGTTGAATCTGATTTCCGATGAATCTGTTTATCTTCGGTAACGTTGAAAACTTTTTTGAATTCACGGAACCATCCTGGTTGAGATACTGAAGGCCATGTATAAATCGGAGAGTCGGTTTGTCTCCATGTCTTAGCAGGTATTGTTATTTTGGAAATTCCCTGTTCTGCTGCCTGGAAATTGAATAATTGAAAAAATATATGTGTTAGCGTAATTCTTACCTGAATGATTTGATGAATCGGGTTTTTACTCTCTTTTCTCATTGATTTCAAATGAGACCGAATTTTGTAGGGATCCCTTGCGGGCAGACAATGCTTGTGAATCATTGTGTATCTATCAGGAACTTCTTTATCAGCGCGCCTGGGAAGATGATGAAACTGAAGTATTGCGACTGCCAACATAACATCTTCTTCGTTCAGGAACGGTAGTGGTTTTTCAATATAAATCGGTTGGCACGGTGGTAGTAGTCCAGGATAGCGGATAGCTTCACTTCTAGAAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>501 458 41</canonical_bands>
                <polymorphic_bands>542 458</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCTACAAGCTCTTCAACAT</pcr_primer_p1>
		<pcr_primer_p2>TTATACATGGCCTTCAGTATCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCTACAAGCTCTTCAACATGTGCGGTATTCATCTTTATCGTACGTCCATCTGGCCCTTTTCCAATATCTACGTACTCGGGTTTATCGTCGTGGCTGCCTGATGACATGTATTTTTCCCTCTGTTTTATTGGGGTCATTATCAACGTTGAATCTGATTTCCGATGAATCTGTTTATCTTCGGTAACGTTGAAAACTTTTTTGAATTCACGGAACCATCCTGGTTGAGATACTGAAGGCCATGTATAA</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCTACAAGCTCTTCAACATGTGCGGTATTCATCTTTATCGTACGTCCATCTGGCCCTTTTCCAATATCTACGTACTCGGGTTTATCGTCGTGGCTGCCTGATGACATGTATTTTTCCCTCTGTTTTATTGGGGTCATTATCMACGTTGAATCTGATTTCCGATGAATCTGTTTATCTTCGGTAACGTTGAAAACTTTTTTGAATTCACGGAACCATCCTGGTTGAGATACTGAAGGCCATGTATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30390</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>366514</contig_pos>
        <strand>+</strand>
        <context>TCACGGAACC[A/C]TCCTGGTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATCTGTTTATCTTCGGTAACGTTGAAAACTTTTTTGAATTCACGGAACC</left_flank>
        <right_flank>TCCTGGTTGAGATACTGAAGGCCATGTATAAATCGGAGAGTCGGTTTGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTACTCTCGTACGTGTAAGAACAGGAGGGTTTCTGTTCATCGATCATCTCCTTCTTAACAGACGAATTTGCAGAATTCTTTGAAGTATCTTTGGTGCATTCTAATTTGCGAGCTGCTTTCGAAGAACGAGAAGGTTTTGTTTTCTGTGCAACATTCTCTGTTTCTGGTGCCGTGCTCAGTTTCATCGGGGTAGGGTTTTTACGACGGTTCGAACTCTAAAATGTCTCGAATATGAAAAATAACTGAAAAGATAATGAAACCTACCTTGACGTAATTGAGTTTCTCTACAAGCTCTTCAACATGTGCGGTATTCATCTTTATCGTACGTCCATCTGGCCCTTTTCCAATATCTACGTACTCGGGTTTATCGTCGTGGCTGCCTGATGACATGTATTTTTCCCTCTGTTTTATTGGGGTCATTATCAACGTTGAATCTGATTTCCGATGAATCTGTTTATCTTCGGTAACGTTGAAAACTTTTTTGAATTCACGGAACCATCCTGGTTGAGATACTGAAGGCCATGTATAAATCGGAGAGTCGGTTTGTCTCCATGTCTTAGCAGGTATTGTTATTTTGGAAATTCCCTGTTCTGCTGCCTGGAAATTGAATAATTGAAAAAATATATGTGTTAGCGTAATTCTTACCTGAATGATTTGATGAATCGGGTTTTTACTCTCTTTTCTCATTGATTTCAAATGAGACCGAATTTTGTAGGGATCCCTTGCGGGCAGACAATGCTTGTGAATCATTGTGTATCTATCAGGAACTTCTTTATCAGCGCGCCTGGGAAGATGATGAAACTGAAGTATTGCGACTGCCAACATAACATCTTCTTCGTTCAGGAACGGTAGTGGTTTTTCAATATAAATCGGTTGGCACGGTGGTAGTAGTCCAGGATAGCGGATAGCTTCACTTCTAGAAAGCACAGCTGCAGCTTCTGGTCTCAGTGCTTGTCCTCCACATCGATCCGTATTTTGCGCATAGTTTAGCAAGCTAT</canonical>
            <polymorphic>CATTACTCTCGTACGTGTAAGAACAGGAGGGTTTCTGTTCATCGATCATCTCCTTCTTAACAGACGAATTTGCAGAATTCTTTGAAGTATCTTTGGTGCATTCTAATTTGCGAGCTGCTTTCGAAGAACGAGAAGGTTTTGTTTTCTGTGCAACATTCTCTGTTTCTGGTGCCGTGCTCAGTTTCATCGGGGTAGGGTTTTTACGACGGTTCGAACTCTAAAATGTCTCGAATATGAAAAATAACTGAAAAGATAATGAAACCTACCTTGACGTAATTGAGTTTCTCTACAAGCTCTTCAACATGTGCGGTATTCATCTTTATCGTACGTCCATCTGGCCCTTTTCCAATATCTACGTACTCGGGTTTATCGTCGTGGCTGCCTGATGACATGTATTTTTCCCTCTGTTTTATTGGGGTCATTATCAACGTTGAATCTGATTTCCGATGAATCTGTTTATCTTCGGTAACGTTGAAAACTTTTTTGAATTCACGGAACCMTCCTGGTTGAGATACTGAAGGCCATGTATAAATCGGAGAGTCGGTTTGTCTCCATGTCTTAGCAGGTATTGTTATTTTGGAAATTCCCTGTTCTGCTGCCTGGAAATTGAATAATTGAAAAAATATATGTGTTAGCGTAATTCTTACCTGAATGATTTGATGAATCGGGTTTTTACTCTCTTTTCTCATTGATTTCAAATGAGACCGAATTTTGTAGGGATCCCTTGCGGGCAGACAATGCTTGTGAATCATTGTGTATCTATCAGGAACTTCTTTATCAGCGCGCCTGGGAAGATGATGAAACTGAAGTATTGCGACTGCCAACATAACATCTTCTTCGTTCAGGAACGGTAGTGGTTTTTCAATATAAATCGGTTGGCACGGTGGTAGTAGTCCAGGATAGCGGATAGCTTCACTTCTAGAAAGCACAGCTGCAGCTTCTGGTCTCAGTGCTTGTCCTCCACATCGATCCGTATTTTGCGCATAGTTTAGCAAGCTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCTTTTCCAATATCTACGTACT</pcr_primer_p1>
		<pcr_primer_p2>GGGAATTTCCAAAATAACAATAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCCTTTTCCAATATCTACGTACTCGGGTTTATCGTCGTGGCTGCCTGATGACATGTATTTTTCCCTCTGTTTTATTGGGGTCATTATCAACGTTGAATCTGATTTCCGATGAATCTGTTTATCTTCGGTAACGTTGAAAACTTTTTTGAATTCACGGAACCATCCTGGTTGAGATACTGAAGGCCATGTATAAATCGGAGAGTCGGTTTGTCTCCATGTCTTAGCAGGTATTGTTATTTTGGAAATTCCC</canonical_amplicon>
		<polymorphic_amplicon>CCCTTTTCCAATATCTACGTACTCGGGTTTATCGTCGTGGCTGCCTGATGACATGTATTTTTCCCTCTGTTTTATTGGGGTCATTATCAACGTTGAATCTGATTTCCGATGAATCTGTTTATCTTCGGTAACGTTGAAAACTTTTTTGAATTCACGGAACCMTCCTGGTTGAGATACTGAAGGCCATGTATAAATCGGAGAGTCGGTTTGTCTCCATGTCTTAGCAGGTATTGTTATTTTGGAAATTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30391</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>366696</contig_pos>
        <strand>+</strand>
        <context>TTTACTCTCT[C/T]TTCTCATTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAGCGTAATTCTTACCTGAATGATTTGATGAATCGGGTTTTTACTCTCT</left_flank>
        <right_flank>TTCTCATTGATTTCAAATGAGACCGAATTTTGTAGGGATCCCTTGCGGGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCATCGGGGTAGGGTTTTTACGACGGTTCGAACTCTAAAATGTCTCGAATATGAAAAATAACTGAAAAGATAATGAAACCTACCTTGACGTAATTGAGTTTCTCTACAAGCTCTTCAACATGTGCGGTATTCATCTTTATCGTACGTCCATCTGGCCCTTTTCCAATATCTACGTACTCGGGTTTATCGTCGTGGCTGCCTGATGACATGTATTTTTCCCTCTGTTTTATTGGGGTCATTATCAACGTTGAATCTGATTTCCGATGAATCTGTTTATCTTCGGTAACGTTGAAAACTTTTTTGAATTCACGGAACCATCCTGGTTGAGATACTGAAGGCCATGTATAAATCGGAGAGTCGGTTTGTCTCCATGTCTTAGCAGGTATTGTTATTTTGGAAATTCCCTGTTCTGCTGCCTGGAAATTGAATAATTGAAAAAATATATGTGTTAGCGTAATTCTTACCTGAATGATTTGATGAATCGGGTTTTTACTCTCTTTTCTCATTGATTTCAAATGAGACCGAATTTTGTAGGGATCCCTTGCGGGCAGACAATGCTTGTGAATCATTGTGTATCTATCAGGAACTTCTTTATCAGCGCGCCTGGGAAGATGATGAAACTGAAGTATTGCGACTGCCAACATAACATCTTCTTCGTTCAGGAACGGTAGTGGTTTTTCAATATAAATCGGTTGGCACGGTGGTAGTAGTCCAGGATAGCGGATAGCTTCACTTCTAGAAAGCACAGCTGCAGCTTCTGGTCTCAGTGCTTGTCCTCCACATCGATCCGTATTTTGCGCATAGTTTAGCAAGCTATCATCAACTTTTGGAAAATCATTGATATCGTGGCAAGATGTGATAGCTGCATCTAGGTTTGACACATTGAAAACAGATGTCGATGGTTTTTGCTGCCGAATATCATCAAGCTCATTTAACATCAACTGTGAATCGTTTCGCACGTGACTAAGTGTGTCATCATGGTGGCAGGTGACAACAAAT</canonical>
            <polymorphic>TTCATCGGGGTAGGGTTTTTACGACGGTTCGAACTCTAAAATGTCTCGAATATGAAAAATAACTGAAAAGATAATGAAACCTACCTTGACGTAATTGAGTTTCTCTACAAGCTCTTCAACATGTGCGGTATTCATCTTTATCGTACGTCCATCTGGCCCTTTTCCAATATCTACGTACTCGGGTTTATCGTCGTGGCTGCCTGATGACATGTATTTTTCCCTCTGTTTTATTGGGGTCATTATCAACGTTGAATCTGATTTCCGATGAATCTGTTTATCTTCGGTAACGTTGAAAACTTTTTTGAATTCACGGAACCATCCTGGTTGAGATACTGAAGGCCATGTATAAATCGGAGAGTCGGTTTGTCTCCATGTCTTAGCAGGTATTGTTATTTTGGAAATTCCCTGTTCTGCTGCCTGGAAATTGAATAATTGAAAAAATATATGTGTTAGCGTAATTCTTACCTGAATGATTTGATGAATCGGGTTTTTACTCTCTYTTCTCATTGATTTCAAATGAGACCGAATTTTGTAGGGATCCCTTGCGGGCAGACAATGCTTGTGAATCATTGTGTATCTATCAGGAACTTCTTTATCAGCGCGCCTGGGAAGATGATGAAACTGAAGTATTGCGACTGCCAACATAACATCTTCTTCGTTCAGGAACGGTAGTGGTTTTTCAATATAAATCGGTTGGCACGGTGGTAGTAGTCCAGGATAGCGGATAGCTTCACTTCTAGAAAGCACAGCTGCAGCTTCTGGTCTCAGTGCTTGTCCTCCACATCGATCCGTATTTTGCGCATAGTTTAGCAAGCTATCATCAACTTTTGGAAAATCATTGATATCGTGGCAAGATGTGATAGCTGCATCTAGGTTTGACACATTGAAAACAGATGTCGATGGTTTTTGCTGCCGAATATCATCAAGCTCATTTAACATCAACTGTGAATCGTTTCGCACGTGACTAAGTGTGTCATCATGGTGGCAGGTGACAACAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGGAAATTGAATAATTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTGAACGAAGAAGATGTTATGTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTGGAAATTGAATAATTGAAAAAATATATGTGTTAGCGTAATTCTTACCTGAATGATTTGATGAATCGGGTTTTTACTCTCTTTTCTCATTGATTTCAAATGAGACCGAATTTTGTAGGGATCCCTTGCGGGCAGACAATGCTTGTGAATCATTGTGTATCTATCAGGAACTTCTTTATCAGCGCGCCTGGGAAGATGATGAAACTGAAGTATTGCGACTGCCAACATAACATCTTCTTCGTTCAG</canonical_amplicon>
		<polymorphic_amplicon>CTGGAAATTGAATAATTGAAAAAATATATGTGTTAGCGTAATTCTTACCTGAATGATTTGATGAATCGGGTTTTTACTCTCTYTTCTCATTGATTTCAAATGAGACCGAATTTTGTAGGGATCCCTTGCGGGCAGACAATGCTTGTGAATCATTGTGTATCTATCAGGAACTTCTTTATCAGCGCGCCTGGGAAGATGATGAAACTGAAGTATTGCGACTGCCAACATAACATCTTCTTCGTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30392</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>380735</contig_pos>
        <strand></strand>
        <context>gcaaccacgc[T/G]ttacctgGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CCAAGTCATAGGTCTTCAGCCGCCGTTTTTATACTTTTCGGCAACCACGC</left_flank>
        <right_flank>TTACCTGGGACCTCCAGCGTTAGGTACACAAGTTCAACTCCTCGATAAAT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATAATGAAGATCAATGGAAGATAGAGCATCTGAATGTGAATCCAAATGAAGTAAAATCGAAAATGTTCAAATATCGACTAGTGGATCTTAGTAAGTCCTTAGTTTATAAGACTTTAATATCCAACCTTACAATTTAGATCCAAACACTCTCTATCGTATTCGTGTATCTGCCTCAACATCAAAAGGAGAAGGAAGCCAAAGTGCAGATAGTCTCGCTCAAACAGATGTTGGAGAGCCTGGAACTGTCATTTTCAAGGATCTCAACTTTGATTGTAAAAATGGAGTAAAACTTAGTTGGAACTATGAACCAAGTGTCAAGTGAGTTTTTGGCCCAAAATAATTTTTATAGAGGGGGGAATAGGAGGTTTTTTGGTTTTATGCTAAAGATTGCTTTTCATACTTTTTGACACCGATTTTCCCCATTTGCTTGAATATACAAGTTATAGCCAAGTCATAGGTCTTCAGCCGCCGTTTTTATACTTTTCGGCAACCACGCTTTACCTGGGACCTCCAGCGTTAGGTACACAAGTTCAACTCCTCGATAAATGGAATTTTAAGACAGTTATTTTTTTCATGTCCTCCCACCTTTAACCAAAATTATTCAGCTCGAAAAAGTCGCCAACCTTCACTGTAAAAATAACAAATCAGACGACATCTCTCCAATTCAACACCACTCGCCAAACTGTAAGCTTTTTCTGATTATACTTTTCTAATATAAAGATTTCTAGCTGGATATAATTGATCTCTCCCTTTATGACGAGTATTCTCTGCGAATAATTGTTTTGGAAAGGAGCACAATCGACAATACCACAATTCTGATTGGAAAATACAGCGACAATCATAGATTCATATTGAAAGGTAGTCTTTTTCAAACTCTTTTATTTCAAAAATGAAATTTTCAGACAAATGTGCTTATCAAAGTTCATTCTGTTCTCCAGGAGAAAAATGTGCGAAATTGACATCATCTGCAGCGAATCCACAGTATATTTCGGTGCTG</canonical>
            <polymorphic>CAAATAATGAAGATCAATGGAAGATAGAGCATCTGAATGTGAATCCAAATGAAGTAAAATCGAAAATGTTCAAATATCGACTAGTGGATCTTAGTAAGTCCTTAGTTTATAAGACTTTAATATCCAACCTTACAATTTAGATCCAAACACTCTCTATCGTATTCGTGTATCTGCCTCAACATCAAAAGGAGAAGGAAGCCAAAGTGCAGATAGTCTCGCTCAAACAGATGTTGGAGAGCCTGGAACTGTCATTTTCAAGGATCTCAACTTTGATTGTAAAAATGGAGTAAAACTTAGTTGGAACTATGAACCAAGTGTCAAGTGAGTTTTTGGCCCAAAATAATTTTTATAGAGGGGGGAATAGGAGGTTTTTTGGTTTTATGCTAAAGATTGCTTTTCATACTTTTTGACACCGATTTTCCCCATTTGCTTGAATATACAAGTTATAGCCAAGTCATAGGTCTTCAGCCGCCGTTTTTATACTTTTCGGCAACCACGCKTTACCTGGGACCTCCAGCGTTAGGTACACAAGTTCAACTCCTCGATAAATGGAATTTTAAGACAGTTATTTTTTTCATGTCCTCCCACCTTTAACCAAAATTATTCAGCTCGAAAAAGTCGCCAACCTTCACTGTAAAAATAACAAATCAGACGACATCTCTCCAATTCAACACCACTCGCCAAACTGTAAGCTTTTTCTGATTATACTTTTCTAATATAAAGATTTCTAGCTGGATATAATTGATCTCTCCCTTTATGACGAGTATTCTCTGCGAATAATTGTTTTGGAAAGGAGCACAATCGACAATACCACAATTCTGATTGGAAAATACAGCGACAATCATAGATTCATATTGAAAGGTAGTCTTTTTCAAACTCTTTTATTTCAAAAATGAAATTTTCAGACAAATGTGCTTATCAAAGTTCATTCTGTTCTCCAGGAGAAAAATGTGCGAAATTGACATCATCTGCAGCGAATCCACAGTATATTTCGGTGCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCAAGTGTCAAGTGAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TAAAATTCCATTTATCGAGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCAAGTGTCAAGTGAGTTTTTGGCCCAAAATAATTTTTATAGAGGGGGGAATAGGAGGTTTTTTGGTTTTATGCTAAAGATTGCTTTTCATACTTTTTGACACCGATTTTCCCCATTTGCTTGAATATACAAGTTATAGCCAAGTCATAGGTCTTCAGCCGCCGTTTTTATACTTTTCGGCAACCACGCTTTACCTGGGACCTCCAGCGTTAGGTACACAAGTTCAACTCCTCGATAAATGGAATTTTA</canonical_amplicon>
		<polymorphic_amplicon>ACCAAGTGTCAAGTGAGTTTTTGGCCCAAAATAATTTTTATAGAGGGGGGAATAGGAGGTTTTTTGGTTTTATGCTAAAGATTGCTTTTCATACTTTTTGACACCGATTTTCCCCATTTGCTTGAATATACAAGTTATAGCCAAGTCATAGGTCTTCAGCCGCCGTTTTTATACTTTTCGGCAACCACGCKTTACCTGGGACCTCCAGCGTTAGGTACACAAGTTCAACTCCTCGATAAATGGAATTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30393</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>404406</contig_pos>
        <strand>+</strand>
        <context>TTGAATTGAA[A/T]TTTTTTTGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTCCAGGACATCCGAAAGCTGAAATTTCGAAAATAACTTTTGAATTGAA</left_flank>
        <right_flank>TTTTTTTGTTACCTCATTTTTATTACCGATTTTCGAAACTTGAAGTGCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCAAATAAATACTTATTTTCACGTGAAAGAAGCTCTATGAATTATGTATTCGAAACGTACGCGTGATGACCTAAAAACGCAAAAATTGAAAAAATAAATCCATTCCTACGGAAATTCTAGTCTTCCGTTTTTGGACATTTATTTGGAAAACGGAAGACAACAGACGGAAATAAAAGTTTTTTCTTCAGAAGGCATAGAACGGAAGACGGAACGAAAAAAACCACGGAAGACGGAAAGCGGAAGACTGAATTTCGCTCAAAATTGAGAGCTACTGAAAACGAGTACAACGAAGAAGTCAGAATTAGAAGAGGAAAAACAAATGTCGATGACAAACGCGCGCACAAAAATAGAAATAGTGGATTCCCAAAAAAAAACAATCAAGTTCACGAAGTCTTTTCAACTGCCATAGAACCGATCACGAATGCTCCTTGAGCATATTGACTTGTTGCTCCAGGACATCCGAAAGCTGAAATTTCGAAAATAACTTTTGAATTGAATTTTTTTTGTTACCTCATTTTTATTACCGATTTTCGAAACTTGAAGTGCAACAAACAACTGTTTACGAGCGTTCTAAATTCTTTTAATAGCTAATTTTTCAGAACTTGTGAACTTCTGTTAAAATTTATTGAAAACTGGAATTTTAGAGTTATAAGGAGGGAAAAAATAACAATATATCTCAATTTTGGTGGTCGGAAAAAAAAGATTCAAATATTGGCATTTTAACATTTTCATTCATTAATTTTAAAAAATTCGTGCTAGAAAATGTTCCTAGATTTTTACTCAGGAAATATGCTTTTTTTTGGGAAAACGGAAAAAGGTCTGTTAATTTTTAAACTTTGCTAATATCCTCACCTTTAATTCTGCTCTGCTATCTCGATCCTTTGAAGTCACCGATCCTGGAAGTTGTCGTCGACGTCCTATGTCTTATGAAACGGGGGCTTCGCAATACTGGAAAATCCTGGAACTTGAACGTTGCAACGAAGTACTGATTCTTTCTG</canonical>
            <polymorphic>TCTCAAATAAATACTTATTTTCACGTGAAAGAAGCTCTATGAATTATGTATTCGAAACGTACGCGTGATGACCTAAAAACGCAAAAATTGAAAAAATAAATCCATTCCTACGGAAATTCTAGTCTTCCGTTTTTGGACATTTATTTGGAAAACGGAAGACAACAGACGGAAATAAAAGTTTTTTCTTCAGAAGGCATAGAACGGAAGACGGAACGAAAAAAACCACGGAAGACGGAAAGCGGAAGACTGAATTTCGCTCAAAATTGAGAGCTACTGAAAACGAGTACAACGAAGAAGTCAGAATTAGAAGAGGAAAAACAAATGTCGATGACAAACGCGCGCACAAAAATAGAAATAGTGGATTCCCAAAAAAAAACAATCAAGTTCACGAAGTCTTTTCAACTGCCATAGAACCGATCACGAATGCTCCTTGAGCATATTGACTTGTTGCTCCAGGACATCCGAAAGCTGAAATTTCGAAAATAACTTTTGAATTGAAWTTTTTTTGTTACCTCATTTTTATTACCGATTTTCGAAACTTGAAGTGCAACAAACAACTGTTTACGAGCGTTCTAAATTCTTTTAATAGCTAATTTTTCAGAACTTGTGAACTTCTGTTAAAATTTATTGAAAACTGGAATTTTAGAGTTATAAGGAGGGAAAAAATAACAATATATCTCAATTTTGGTGGTCGGAAAAAAAAGATTCAAATATTGGCATTTTAACATTTTCATTCATTAATTTTAAAAAATTCGTGCTAGAAAATGTTCCTAGATTTTTACTCAGGAAATATGCTTTTTTTTGGGAAAACGGAAAAAGGTCTGTTAATTTTTAAACTTTGCTAATATCCTCACCTTTAATTCTGCTCTGCTATCTCGATCCTTTGAAGTCACCGATCCTGGAAGTTGTCGTCGACGTCCTATGTCTTATGAAACGGGGGCTTCGCAATACTGGAAAATCCTGGAACTTGAACGTTGCAACGAAGTACTGATTCTTTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>251 223 135 114 111 78 46 25 17</canonical_bands>
                <polymorphic_bands>251 223 135 114 111 103 46 17</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>171 142 135 78 77 59 44 42 41 40 32 30 29 20 17 16 12 10 5</canonical_bands>
                <polymorphic_bands>171 142 135 83 77 59 44 42 41 40 32 30 29 20 17 16 12 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACAAATGTCGATGACAAAC</pcr_primer_p1>
		<pcr_primer_p2>GTAAACAGTTGTTTGTTGCACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACAAATGTCGATGACAAACGCGCGCACAAAAATAGAAATAGTGGATTCCCAAAAAAAAACAATCAAGTTCACGAAGTCTTTTCAACTGCCATAGAACCGATCACGAATGCTCCTTGAGCATATTGACTTGTTGCTCCAGGACATCCGAAAGCTGAAATTTCGAAAATAACTTTTGAATTGAATTTTTTTTGTTACCTCATTTTTATTACCGATTTTCGAAACTTGAAGTGCAACAAACAACTGTTTAC</canonical_amplicon>
		<polymorphic_amplicon>AAACAAATGTCGATGACAAACGCGCGCACAAAAATAGAAATAGTGGATTCCCAAAAAAAAACAATCAAGTTCACGAAGTCTTTTCAACTGCCATAGAACCGATCACGAATGCTCCTTGAGCATATTGACTTGTTGCTCCAGGACATCCGAAAGCTGAAATTTCGAAAATAACTTTTGAATTGAAWTTTTTTTGTTACCTCATTTTTATTACCGATTTTCGAAACTTGAAGTGCAACAAACAACTGTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30394</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>417697</contig_pos>
        <strand>+</strand>
        <context>TAGAAGGAAC[G/T]SACWGATACC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGTCATGCAGAAAATTGGATAGGTTAACTAAATGGTATAATAGAAGGAAC</left_flank>
        <right_flank>GACAGATACCAATCACGAGACAACACTTTTTAGATTACCTCCTTTTGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTAGCCTCAGTTCTTCCGATCGGTTCTCCTTGCTGAATGATGTAGATCAACTTAGTCAGGCTATGGGTGCATTTTTTGATATTAATCGGTGTTTCGTTGAAAGCACGGCATTCCTGCAGCACCGAAGTTTTGTCTAGGTGGGCATAGACGTTTCCGCCTGACTCCTCGTCTTTCTTGTTTGTCTTCATTCTAGAAGATTGAGCTGAAATAGACAAGATAATGATGTAGATTTAGAAGAATGTTCAAATGGTCAAAGGATATAGAAGCTCTATAGAAGTCTGAATACTAAAAAATTAATGAAAAGGACTGTTCTATGTTATGGAATAAATCCTATAGAACCGTTGAAAGTTTAATATAAATAACAGTGTCTTGATTTTTTATTAAATATAAAAGGGTCAACTTAAATGGGTAAAAACGAACTACGAATGTTGTGTAGGAGCAATAAGAGAGTCATGCAGAAAATTGGATAGGTTAACTAAATGGTATAATAGAAGGAACGGACAGATACCAATCACGAGACAACACTTTTTAGATTACCTCCTTTTGTTTTTGGAGCTCCGCTCATTTTCACGTGAAAAGGACCTTTCACCTAAATTTATCTGTAATTAGGTTCGGATATAATAATCACCACATTCAGTTAGAGTTAATGAAAAAAGTTTGTTAACAATTTAGAAAATTTTCGGCTTGTTAGGAACTTTATCTATGTTAAAAAGGCAAAACCTTAGTCGAAAAAGCAGCGCCGATGCTACGTGTAATGTCTGTGATCCGACGTTGTGTGTTGGGTCCTGGACGCAAACACTCGCTGCTGACCGTAATCTTGTTGGAAATTAGTCATTTCTATGTTTCAGCTGTGGACCTTCGATTTTCTTCTTTTTGGCTCCGCTTTGTTGTTATGAGCGTTAATTTTTTTTTCCTGAATAAAACTCTTGAGTATCTAAGTAATTAGGTCATGTAAGCATGCACACTTGTGCAAAGTGCAATTCGTTCATAATTCAAAAG</canonical>
            <polymorphic>CGTAGCCTCAGTTCTTCCGATCGGTTCTCCTTGCTGAATGATGTAGATCAACTTAGTCAGGCTATGGGTGCATTTTTTGATATTAATCGGTGTTTCGTTGAAAGCACGGCATTCCTGCAGCACCGAAGTTTTGTCTAGGTGGGCATAGACGTTTCCGCCTGACTCCTCGTCTTTCTTGTTTGTCTTCATTCTAGAAGATTGAGCTGAAATAGACAAGATAATGATGTAGATTTAGAAGAATGTTCAAATGGTCAAAGGATATAGAAGCTCTATAGAAGTCTGAATACTAAAAAATTAATGAAAAGGACTGTTCTATGTTATGGAATAAATCCTATAGAACCGTTGAAAGTTTAATATAAATAACAGTGTCTTGATTTTTTATTAAATATAAAAGGGTCAACTTAAATGGGTAAAAACGAACTACGAATGTTGTGTAGGAGCAATAAGAGAGTCATGCAGAAAATTGGATAGGTTAACTAAATGGTATAATAGAAGGAACKGACAGATACCAATCACGAGACAACACTTTTTAGATTACCTCCTTTTGTTTTTGGAGCTCCGCTCATTTTCACGTGAAAAGGACCTTTCACCTAAATTTATCTGTAATTAGGTTCGGATATAATAATCACCACATTCAGTTAGAGTTAATGAAAAAAGTTTGTTAACAATTTAGAAAATTTTCGGCTTGTTAGGAACTTTATCTATGTTAAAAAGGCAAAACCTTAGTCGAAAAAGCAGCGCCGATGCTACGTGTAATGTCTGTGATCCGACGTTGTGTGTTGGGTCCTGGACGCAAACACTCGCTGCTGACCGTAATCTTGTTGGAAATTAGTCATTTCTATGTTTCAGCTGTGGACCTTCGATTTTCTTCTTTTTGGCTCCGCTTTGTTGTTATGAGCGTTAATTTTTTTTTCCTGAATAAAACTCTTGAGTATCTAAGTAATTAGGTCATGTAAGCATGCACACTTGTGCAAAGTGCAATTCGTTCATAATTCAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTAAATGGGTAAAAACGAACT</pcr_primer_p1>
		<pcr_primer_p2>AACTCTAACTGAATGTGGTGATT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTTAAATGGGTAAAAACGAACTACGAATGTTGTGTAGGAGCAATAAGAGAGTCATGCAGAAAATTGGATAGGTTAACTAAATGGTATAATAGAAGGAACGGACAGATACCAATCACGAGACAACACTTTTTAGATTACCTCCTTTTGTTTTTGGAGCTCCGCTCATTTTCACGTGAAAAGGACCTTTCACCTAAATTTATCTGTAATTAGGTTCGGATATAATAATCACCACATTCAGTTAGAGTT</canonical_amplicon>
		<polymorphic_amplicon>ACTTAAATGGGTAAAAACGAACTACGAATGTTGTGTAGGAGCAATAAGAGAGTCATGCAGAAAATTGGATAGGTTAACTAAATGGTATAATAGAAGGAACKGACAGATACCAATCACGAGACAACACTTTTTAGATTACCTCCTTTTGTTTTTGGAGCTCCGCTCATTTTCACGTGAAAAGGACCTTTCACCTAAATTTATCTGTAATTAGGTTCGGATATAATAATCACCACATTCAGTTAGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30395</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>417698</contig_pos>
        <strand>+</strand>
        <context>AGAAGGAACK[C/G]ACWGATACCA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTCATGCAGAAAATTGGATAGGTTAACTAAATGGTATAATAGAAGGAACG</left_flank>
        <right_flank>ACAGATACCAATCACGAGACAACACTTTTTAGATTACCTCCTTTTGTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAGCCTCAGTTCTTCCGATCGGTTCTCCTTGCTGAATGATGTAGATCAACTTAGTCAGGCTATGGGTGCATTTTTTGATATTAATCGGTGTTTCGTTGAAAGCACGGCATTCCTGCAGCACCGAAGTTTTGTCTAGGTGGGCATAGACGTTTCCGCCTGACTCCTCGTCTTTCTTGTTTGTCTTCATTCTAGAAGATTGAGCTGAAATAGACAAGATAATGATGTAGATTTAGAAGAATGTTCAAATGGTCAAAGGATATAGAAGCTCTATAGAAGTCTGAATACTAAAAAATTAATGAAAAGGACTGTTCTATGTTATGGAATAAATCCTATAGAACCGTTGAAAGTTTAATATAAATAACAGTGTCTTGATTTTTTATTAAATATAAAAGGGTCAACTTAAATGGGTAAAAACGAACTACGAATGTTGTGTAGGAGCAATAAGAGAGTCATGCAGAAAATTGGATAGGTTAACTAAATGGTATAATAGAAGGAACGGACAGATACCAATCACGAGACAACACTTTTTAGATTACCTCCTTTTGTTTTTGGAGCTCCGCTCATTTTCACGTGAAAAGGACCTTTCACCTAAATTTATCTGTAATTAGGTTCGGATATAATAATCACCACATTCAGTTAGAGTTAATGAAAAAAGTTTGTTAACAATTTAGAAAATTTTCGGCTTGTTAGGAACTTTATCTATGTTAAAAAGGCAAAACCTTAGTCGAAAAAGCAGCGCCGATGCTACGTGTAATGTCTGTGATCCGACGTTGTGTGTTGGGTCCTGGACGCAAACACTCGCTGCTGACCGTAATCTTGTTGGAAATTAGTCATTTCTATGTTTCAGCTGTGGACCTTCGATTTTCTTCTTTTTGGCTCCGCTTTGTTGTTATGAGCGTTAATTTTTTTTTCCTGAATAAAACTCTTGAGTATCTAAGTAATTAGGTCATGTAAGCATGCACACTTGTGCAAAGTGCAATTCGTTCATAATTCAAAAGT</canonical>
            <polymorphic>GTAGCCTCAGTTCTTCCGATCGGTTCTCCTTGCTGAATGATGTAGATCAACTTAGTCAGGCTATGGGTGCATTTTTTGATATTAATCGGTGTTTCGTTGAAAGCACGGCATTCCTGCAGCACCGAAGTTTTGTCTAGGTGGGCATAGACGTTTCCGCCTGACTCCTCGTCTTTCTTGTTTGTCTTCATTCTAGAAGATTGAGCTGAAATAGACAAGATAATGATGTAGATTTAGAAGAATGTTCAAATGGTCAAAGGATATAGAAGCTCTATAGAAGTCTGAATACTAAAAAATTAATGAAAAGGACTGTTCTATGTTATGGAATAAATCCTATAGAACCGTTGAAAGTTTAATATAAATAACAGTGTCTTGATTTTTTATTAAATATAAAAGGGTCAACTTAAATGGGTAAAAACGAACTACGAATGTTGTGTAGGAGCAATAAGAGAGTCATGCAGAAAATTGGATAGGTTAACTAAATGGTATAATAGAAGGAACGSACAGATACCAATCACGAGACAACACTTTTTAGATTACCTCCTTTTGTTTTTGGAGCTCCGCTCATTTTCACGTGAAAAGGACCTTTCACCTAAATTTATCTGTAATTAGGTTCGGATATAATAATCACCACATTCAGTTAGAGTTAATGAAAAAAGTTTGTTAACAATTTAGAAAATTTTCGGCTTGTTAGGAACTTTATCTATGTTAAAAAGGCAAAACCTTAGTCGAAAAAGCAGCGCCGATGCTACGTGTAATGTCTGTGATCCGACGTTGTGTGTTGGGTCCTGGACGCAAACACTCGCTGCTGACCGTAATCTTGTTGGAAATTAGTCATTTCTATGTTTCAGCTGTGGACCTTCGATTTTCTTCTTTTTGGCTCCGCTTTGTTGTTATGAGCGTTAATTTTTTTTTCCTGAATAAAACTCTTGAGTATCTAAGTAATTAGGTCATGTAAGCATGCACACTTGTGCAAAGTGCAATTCGTTCATAATTCAAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTAAATGGGTAAAAACGAACT</pcr_primer_p1>
		<pcr_primer_p2>AACTCTAACTGAATGTGGTGATT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTTAAATGGGTAAAAACGAACTACGAATGTTGTGTAGGAGCAATAAGAGAGTCATGCAGAAAATTGGATAGGTTAACTAAATGGTATAATAGAAGGAACGGACAGATACCAATCACGAGACAACACTTTTTAGATTACCTCCTTTTGTTTTTGGAGCTCCGCTCATTTTCACGTGAAAAGGACCTTTCACCTAAATTTATCTGTAATTAGGTTCGGATATAATAATCACCACATTCAGTTAGAGTT</canonical_amplicon>
		<polymorphic_amplicon>ACTTAAATGGGTAAAAACGAACTACGAATGTTGTGTAGGAGCAATAAGAGAGTCATGCAGAAAATTGGATAGGTTAACTAAATGGTATAATAGAAGGAACGSACAGATACCAATCACGAGACAACACTTTTTAGATTACCTCCTTTTGTTTTTGGAGCTCCGCTCATTTTCACGTGAAAAGGACCTTTCACCTAAATTTATCTGTAATTAGGTTCGGATATAATAATCACCACATTCAGTTAGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30396</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>417701</contig_pos>
        <strand>+</strand>
        <context>AGGAACKSAC[A/T]GATACCAAYC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGCAGAAAATTGGATAGGTTAACTAAATGGTATAATAGAAGGAACGGAC</left_flank>
        <right_flank>GATACCAATCACGAGACAACACTTTTTAGATTACCTCCTTTTGTTTTTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCTCAGTTCTTCCGATCGGTTCTCCTTGCTGAATGATGTAGATCAACTTAGTCAGGCTATGGGTGCATTTTTTGATATTAATCGGTGTTTCGTTGAAAGCACGGCATTCCTGCAGCACCGAAGTTTTGTCTAGGTGGGCATAGACGTTTCCGCCTGACTCCTCGTCTTTCTTGTTTGTCTTCATTCTAGAAGATTGAGCTGAAATAGACAAGATAATGATGTAGATTTAGAAGAATGTTCAAATGGTCAAAGGATATAGAAGCTCTATAGAAGTCTGAATACTAAAAAATTAATGAAAAGGACTGTTCTATGTTATGGAATAAATCCTATAGAACCGTTGAAAGTTTAATATAAATAACAGTGTCTTGATTTTTTATTAAATATAAAAGGGTCAACTTAAATGGGTAAAAACGAACTACGAATGTTGTGTAGGAGCAATAAGAGAGTCATGCAGAAAATTGGATAGGTTAACTAAATGGTATAATAGAAGGAACGGACAGATACCAATCACGAGACAACACTTTTTAGATTACCTCCTTTTGTTTTTGGAGCTCCGCTCATTTTCACGTGAAAAGGACCTTTCACCTAAATTTATCTGTAATTAGGTTCGGATATAATAATCACCACATTCAGTTAGAGTTAATGAAAAAAGTTTGTTAACAATTTAGAAAATTTTCGGCTTGTTAGGAACTTTATCTATGTTAAAAAGGCAAAACCTTAGTCGAAAAAGCAGCGCCGATGCTACGTGTAATGTCTGTGATCCGACGTTGTGTGTTGGGTCCTGGACGCAAACACTCGCTGCTGACCGTAATCTTGTTGGAAATTAGTCATTTCTATGTTTCAGCTGTGGACCTTCGATTTTCTTCTTTTTGGCTCCGCTTTGTTGTTATGAGCGTTAATTTTTTTTTCCTGAATAAAACTCTTGAGTATCTAAGTAATTAGGTCATGTAAGCATGCACACTTGTGCAAAGTGCAATTCGTTCATAATTCAAAAGTCTC</canonical>
            <polymorphic>GCCTCAGTTCTTCCGATCGGTTCTCCTTGCTGAATGATGTAGATCAACTTAGTCAGGCTATGGGTGCATTTTTTGATATTAATCGGTGTTTCGTTGAAAGCACGGCATTCCTGCAGCACCGAAGTTTTGTCTAGGTGGGCATAGACGTTTCCGCCTGACTCCTCGTCTTTCTTGTTTGTCTTCATTCTAGAAGATTGAGCTGAAATAGACAAGATAATGATGTAGATTTAGAAGAATGTTCAAATGGTCAAAGGATATAGAAGCTCTATAGAAGTCTGAATACTAAAAAATTAATGAAAAGGACTGTTCTATGTTATGGAATAAATCCTATAGAACCGTTGAAAGTTTAATATAAATAACAGTGTCTTGATTTTTTATTAAATATAAAAGGGTCAACTTAAATGGGTAAAAACGAACTACGAATGTTGTGTAGGAGCAATAAGAGAGTCATGCAGAAAATTGGATAGGTTAACTAAATGGTATAATAGAAGGAACGGACWGATACCAATCACGAGACAACACTTTTTAGATTACCTCCTTTTGTTTTTGGAGCTCCGCTCATTTTCACGTGAAAAGGACCTTTCACCTAAATTTATCTGTAATTAGGTTCGGATATAATAATCACCACATTCAGTTAGAGTTAATGAAAAAAGTTTGTTAACAATTTAGAAAATTTTCGGCTTGTTAGGAACTTTATCTATGTTAAAAAGGCAAAACCTTAGTCGAAAAAGCAGCGCCGATGCTACGTGTAATGTCTGTGATCCGACGTTGTGTGTTGGGTCCTGGACGCAAACACTCGCTGCTGACCGTAATCTTGTTGGAAATTAGTCATTTCTATGTTTCAGCTGTGGACCTTCGATTTTCTTCTTTTTGGCTCCGCTTTGTTGTTATGAGCGTTAATTTTTTTTTCCTGAATAAAACTCTTGAGTATCTAAGTAATTAGGTCATGTAAGCATGCACACTTGTGCAAAGTGCAATTCGTTCATAATTCAAAAGTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTAAATGGGTAAAAACGAACT</pcr_primer_p1>
		<pcr_primer_p2>AACTCTAACTGAATGTGGTGATT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTTAAATGGGTAAAAACGAACTACGAATGTTGTGTAGGAGCAATAAGAGAGTCATGCAGAAAATTGGATAGGTTAACTAAATGGTATAATAGAAGGAACGGACAGATACCAATCACGAGACAACACTTTTTAGATTACCTCCTTTTGTTTTTGGAGCTCCGCTCATTTTCACGTGAAAAGGACCTTTCACCTAAATTTATCTGTAATTAGGTTCGGATATAATAATCACCACATTCAGTTAGAGTT</canonical_amplicon>
		<polymorphic_amplicon>ACTTAAATGGGTAAAAACGAACTACGAATGTTGTGTAGGAGCAATAAGAGAGTCATGCAGAAAATTGGATAGGTTAACTAAATGGTATAATAGAAGGAACGGACWGATACCAATCACGAGACAACACTTTTTAGATTACCTCCTTTTGTTTTTGGAGCTCCGCTCATTTTCACGTGAAAAGGACCTTTCACCTAAATTTATCTGTAATTAGGTTCGGATATAATAATCACCACATTCAGTTAGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30397</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>417710</contig_pos>
        <strand>+</strand>
        <context>CWGATACCAA[C/T]CACGAGACAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGGATAGGTTAACTAAATGGTATAATAGAAGGAACGGACAGATACCAA</left_flank>
        <right_flank>CACGAGACAACACTTTTTAGATTACCTCCTTTTGTTTTTGGAGCTCCGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCCGATCGGTTCTCCTTGCTGAATGATGTAGATCAACTTAGTCAGGCTATGGGTGCATTTTTTGATATTAATCGGTGTTTCGTTGAAAGCACGGCATTCCTGCAGCACCGAAGTTTTGTCTAGGTGGGCATAGACGTTTCCGCCTGACTCCTCGTCTTTCTTGTTTGTCTTCATTCTAGAAGATTGAGCTGAAATAGACAAGATAATGATGTAGATTTAGAAGAATGTTCAAATGGTCAAAGGATATAGAAGCTCTATAGAAGTCTGAATACTAAAAAATTAATGAAAAGGACTGTTCTATGTTATGGAATAAATCCTATAGAACCGTTGAAAGTTTAATATAAATAACAGTGTCTTGATTTTTTATTAAATATAAAAGGGTCAACTTAAATGGGTAAAAACGAACTACGAATGTTGTGTAGGAGCAATAAGAGAGTCATGCAGAAAATTGGATAGGTTAACTAAATGGTATAATAGAAGGAACGGACAGATACCAATCACGAGACAACACTTTTTAGATTACCTCCTTTTGTTTTTGGAGCTCCGCTCATTTTCACGTGAAAAGGACCTTTCACCTAAATTTATCTGTAATTAGGTTCGGATATAATAATCACCACATTCAGTTAGAGTTAATGAAAAAAGTTTGTTAACAATTTAGAAAATTTTCGGCTTGTTAGGAACTTTATCTATGTTAAAAAGGCAAAACCTTAGTCGAAAAAGCAGCGCCGATGCTACGTGTAATGTCTGTGATCCGACGTTGTGTGTTGGGTCCTGGACGCAAACACTCGCTGCTGACCGTAATCTTGTTGGAAATTAGTCATTTCTATGTTTCAGCTGTGGACCTTCGATTTTCTTCTTTTTGGCTCCGCTTTGTTGTTATGAGCGTTAATTTTTTTTTCCTGAATAAAACTCTTGAGTATCTAAGTAATTAGGTCATGTAAGCATGCACACTTGTGCAAAGTGCAATTCGTTCATAATTCAAAAGTCTCATGAATTAT</canonical>
            <polymorphic>CTTCCGATCGGTTCTCCTTGCTGAATGATGTAGATCAACTTAGTCAGGCTATGGGTGCATTTTTTGATATTAATCGGTGTTTCGTTGAAAGCACGGCATTCCTGCAGCACCGAAGTTTTGTCTAGGTGGGCATAGACGTTTCCGCCTGACTCCTCGTCTTTCTTGTTTGTCTTCATTCTAGAAGATTGAGCTGAAATAGACAAGATAATGATGTAGATTTAGAAGAATGTTCAAATGGTCAAAGGATATAGAAGCTCTATAGAAGTCTGAATACTAAAAAATTAATGAAAAGGACTGTTCTATGTTATGGAATAAATCCTATAGAACCGTTGAAAGTTTAATATAAATAACAGTGTCTTGATTTTTTATTAAATATAAAAGGGTCAACTTAAATGGGTAAAAACGAACTACGAATGTTGTGTAGGAGCAATAAGAGAGTCATGCAGAAAATTGGATAGGTTAACTAAATGGTATAATAGAAGGAACGGACAGATACCAAYCACGAGACAACACTTTTTAGATTACCTCCTTTTGTTTTTGGAGCTCCGCTCATTTTCACGTGAAAAGGACCTTTCACCTAAATTTATCTGTAATTAGGTTCGGATATAATAATCACCACATTCAGTTAGAGTTAATGAAAAAAGTTTGTTAACAATTTAGAAAATTTTCGGCTTGTTAGGAACTTTATCTATGTTAAAAAGGCAAAACCTTAGTCGAAAAAGCAGCGCCGATGCTACGTGTAATGTCTGTGATCCGACGTTGTGTGTTGGGTCCTGGACGCAAACACTCGCTGCTGACCGTAATCTTGTTGGAAATTAGTCATTTCTATGTTTCAGCTGTGGACCTTCGATTTTCTTCTTTTTGGCTCCGCTTTGTTGTTATGAGCGTTAATTTTTTTTTCCTGAATAAAACTCTTGAGTATCTAAGTAATTAGGTCATGTAAGCATGCACACTTGTGCAAAGTGCAATTCGTTCATAATTCAAAAGTCTCATGAATTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATNNNNATC</site>
                <isoschizomers>
                    <enzyme>BsaBI</enzyme>
                    <enzyme>Bse8I</enzyme>
                    <enzyme>BseJI</enzyme>
                    <enzyme>BsiBI</enzyme>
                    <enzyme>BsrBRI</enzyme>
                    <enzyme>MamI</enzyme>
                </isoschizomers>
                <canonical_bands>504 426 39 31</canonical_bands>
                <polymorphic_bands>930 39 31</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>400 179 178 144 77 13 9</canonical_bands>
                <polymorphic_bands>544 179 178 77 13 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTAAATGGGTAAAAACGAACT</pcr_primer_p1>
		<pcr_primer_p2>AACTCTAACTGAATGTGGTGATT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTTAAATGGGTAAAAACGAACTACGAATGTTGTGTAGGAGCAATAAGAGAGTCATGCAGAAAATTGGATAGGTTAACTAAATGGTATAATAGAAGGAACGGACAGATACCAATCACGAGACAACACTTTTTAGATTACCTCCTTTTGTTTTTGGAGCTCCGCTCATTTTCACGTGAAAAGGACCTTTCACCTAAATTTATCTGTAATTAGGTTCGGATATAATAATCACCACATTCAGTTAGAGTT</canonical_amplicon>
		<polymorphic_amplicon>ACTTAAATGGGTAAAAACGAACTACGAATGTTGTGTAGGAGCAATAAGAGAGTCATGCAGAAAATTGGATAGGTTAACTAAATGGTATAATAGAAGGAACGGACAGATACCAAYCACGAGACAACACTTTTTAGATTACCTCCTTTTGTTTTTGGAGCTCCGCTCATTTTCACGTGAAAAGGACCTTTCACCTAAATTTATCTGTAATTAGGTTCGGATATAATAATCACCACATTCAGTTAGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30398</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>417730</contig_pos>
        <strand>+</strand>
        <context>ACACTTTTTA[C/G]ATTACCTCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGTATAATAGAAGGAACGGACAGATACCAATCACGAGACAACACTTTTTA</left_flank>
        <right_flank>ATTACCTCCTTTTGTTTTTGGAGCTCCGCTCATTTTCACGTGAAAAGGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAATGATGTAGATCAACTTAGTCAGGCTATGGGTGCATTTTTTGATATTAATCGGTGTTTCGTTGAAAGCACGGCATTCCTGCAGCACCGAAGTTTTGTCTAGGTGGGCATAGACGTTTCCGCCTGACTCCTCGTCTTTCTTGTTTGTCTTCATTCTAGAAGATTGAGCTGAAATAGACAAGATAATGATGTAGATTTAGAAGAATGTTCAAATGGTCAAAGGATATAGAAGCTCTATAGAAGTCTGAATACTAAAAAATTAATGAAAAGGACTGTTCTATGTTATGGAATAAATCCTATAGAACCGTTGAAAGTTTAATATAAATAACAGTGTCTTGATTTTTTATTAAATATAAAAGGGTCAACTTAAATGGGTAAAAACGAACTACGAATGTTGTGTAGGAGCAATAAGAGAGTCATGCAGAAAATTGGATAGGTTAACTAAATGGTATAATAGAAGGAACGGACAGATACCAATCACGAGACAACACTTTTTAGATTACCTCCTTTTGTTTTTGGAGCTCCGCTCATTTTCACGTGAAAAGGACCTTTCACCTAAATTTATCTGTAATTAGGTTCGGATATAATAATCACCACATTCAGTTAGAGTTAATGAAAAAAGTTTGTTAACAATTTAGAAAATTTTCGGCTTGTTAGGAACTTTATCTATGTTAAAAAGGCAAAACCTTAGTCGAAAAAGCAGCGCCGATGCTACGTGTAATGTCTGTGATCCGACGTTGTGTGTTGGGTCCTGGACGCAAACACTCGCTGCTGACCGTAATCTTGTTGGAAATTAGTCATTTCTATGTTTCAGCTGTGGACCTTCGATTTTCTTCTTTTTGGCTCCGCTTTGTTGTTATGAGCGTTAATTTTTTTTTCCTGAATAAAACTCTTGAGTATCTAAGTAATTAGGTCATGTAAGCATGCACACTTGTGCAAAGTGCAATTCGTTCATAATTCAAAAGTCTCATGAATTATTGAAAAGTTTCTCCGTATTC</canonical>
            <polymorphic>CTGAATGATGTAGATCAACTTAGTCAGGCTATGGGTGCATTTTTTGATATTAATCGGTGTTTCGTTGAAAGCACGGCATTCCTGCAGCACCGAAGTTTTGTCTAGGTGGGCATAGACGTTTCCGCCTGACTCCTCGTCTTTCTTGTTTGTCTTCATTCTAGAAGATTGAGCTGAAATAGACAAGATAATGATGTAGATTTAGAAGAATGTTCAAATGGTCAAAGGATATAGAAGCTCTATAGAAGTCTGAATACTAAAAAATTAATGAAAAGGACTGTTCTATGTTATGGAATAAATCCTATAGAACCGTTGAAAGTTTAATATAAATAACAGTGTCTTGATTTTTTATTAAATATAAAAGGGTCAACTTAAATGGGTAAAAACGAACTACGAATGTTGTGTAGGAGCAATAAGAGAGTCATGCAGAAAATTGGATAGGTTAACTAAATGGTATAATAGAAGGAACGGACAGATACCAATCACGAGACAACACTTTTTASATTACCTCCTTTTGTTTTTGGAGCTCCGCTCATTTTCACGTGAAAAGGACCTTTCACCTAAATTTATCTGTAATTAGGTTCGGATATAATAATCACCACATTCAGTTAGAGTTAATGAAAAAAGTTTGTTAACAATTTAGAAAATTTTCGGCTTGTTAGGAACTTTATCTATGTTAAAAAGGCAAAACCTTAGTCGAAAAAGCAGCGCCGATGCTACGTGTAATGTCTGTGATCCGACGTTGTGTGTTGGGTCCTGGACGCAAACACTCGCTGCTGACCGTAATCTTGTTGGAAATTAGTCATTTCTATGTTTCAGCTGTGGACCTTCGATTTTCTTCTTTTTGGCTCCGCTTTGTTGTTATGAGCGTTAATTTTTTTTTCCTGAATAAAACTCTTGAGTATCTAAGTAATTAGGTCATGTAAGCATGCACACTTGTGCAAAGTGCAATTCGTTCATAATTCAAAAGTCTCATGAATTATTGAAAAGTTTCTCCGTATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTAAATGGGTAAAAACGAACT</pcr_primer_p1>
		<pcr_primer_p2>AACTCTAACTGAATGTGGTGATT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTTAAATGGGTAAAAACGAACTACGAATGTTGTGTAGGAGCAATAAGAGAGTCATGCAGAAAATTGGATAGGTTAACTAAATGGTATAATAGAAGGAACGGACAGATACCAATCACGAGACAACACTTTTTAGATTACCTCCTTTTGTTTTTGGAGCTCCGCTCATTTTCACGTGAAAAGGACCTTTCACCTAAATTTATCTGTAATTAGGTTCGGATATAATAATCACCACATTCAGTTAGAGTT</canonical_amplicon>
		<polymorphic_amplicon>ACTTAAATGGGTAAAAACGAACTACGAATGTTGTGTAGGAGCAATAAGAGAGTCATGCAGAAAATTGGATAGGTTAACTAAATGGTATAATAGAAGGAACGGACAGATACCAATCACGAGACAACACTTTTTASATTACCTCCTTTTGTTTTTGGAGCTCCGCTCATTTTCACGTGAAAAGGACCTTTCACCTAAATTTATCTGTAATTAGGTTCGGATATAATAATCACCACATTCAGTTAGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30399</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>420664</contig_pos>
        <strand>+</strand>
        <context>GAAAGTAGCA[A/C]CGKATGATCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATGGCTGGTTATGAGTGACATTTGAAGAATGACGGAAGAGAAAGTAGCA</left_flank>
        <right_flank>CGTATGATCCGCCAACGAGTTTGAAGCAAACAATTTTCAATTTCATATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGATGGTTATCATTGCAATAATACAGGTAAGCATCAATTTTTCAATCATTAAACAAAATACAAAATTGCAGGTGCTCGGTATTTGTTTCGCTCAAAATCTCAAATCGGATATTCTGGCTCAACGGGCGAAATGGTACTACACTCATTAATAAATTAATCAACGATTTCTTGCACATCCTCTATGATATTCACTTCTACACAGCTTCGAATTACCAAAAAATGCCGGTCACACATCATCGCACACTTTGCAAAATACTATCACGATTCTCTCATTTTTCTTTATGTCACAATTTCATCAATTTGTTCCATTCTTGTTCCAAACTCCACATTTTTACTGGTACCATACTTGTGAGATTTCAATAAAGAATACTTTCGTTTTCATTGTTGATAAATTTAATAGTATTATGTAGTCCCTAGAAGCTCAGTCAGTATATAATAATTGTTTAAATGGCTGGTTATGAGTGACATTTGAAGAATGACGGAAGAGAAAGTAGCAACGTATGATCCGCCAACGAGTTTGAAGCAAACAATTTTCAATTTCATATTAGGACGACAAATAGATTCAGAAGAAAAAAATGAAGGAAAAATTACGGTATAGTCTGAAAGTCATAACAAAATAAAACGGGTTTTGAAGGAATCTTTCATCAAATACGTGCGAGCTGAGCGTTTTTACAAGCTCTCCGCTTCGCTTTCCTTTGTGATTCTCGTTTTTCTCATTGGAATGCCAATGTGGTACCTCACAACGTCGACTTATCGTGCTCCATTTCCAACCTTCCCTGCAAATAGATCAATCACTGTTGAAGTTCGTATAAACTTTGCAATAGCATCCGATGAAATGGGTGAAGATGTTCAAAAAGTAATGCCGGAGTTAGAATACAACATGACAACGAAGGAAGTTGTGGCTCCGTTGGATTTTCAATGGAGAACTCGTTTCATTGGAGTACGAAAGTTTGACGATCTTGAACGAGATCATTCATTGAAAGTTGAAGAAAAAGAA</canonical>
            <polymorphic>TTTCGATGGTTATCATTGCAATAATACAGGTAAGCATCAATTTTTCAATCATTAAACAAAATACAAAATTGCAGGTGCTCGGTATTTGTTTCGCTCAAAATCTCAAATCGGATATTCTGGCTCAACGGGCGAAATGGTACTACACTCATTAATAAATTAATCAACGATTTCTTGCACATCCTCTATGATATTCACTTCTACACAGCTTCGAATTACCAAAAAATGCCGGTCACACATCATCGCACACTTTGCAAAATACTATCACGATTCTCTCATTTTTCTTTATGTCACAATTTCATCAATTTGTTCCATTCTTGTTCCAAACTCCACATTTTTACTGGTACCATACTTGTGAGATTTCAATAAAGAATACTTTCGTTTTCATTGTTGATAAATTTAATAGTATTATGTAGTCCCTAGAAGCTCAGTCAGTATATAATAATTGTTTAAATGGCTGGTTATGAGTGACATTTGAAGAATGACGGAAGAGAAAGTAGCAMCGTATGATCCGCCAACGAGTTTGAAGCAAACAATTTTCAATTTCATATTAGGACGACAAATAGATTCAGAAGAAAAAAATGAAGGAAAAATTACGGTATAGTCTGAAAGTCATAACAAAATAAAACGGGTTTTGAAGGAATCTTTCATCAAATACGTGCGAGCTGAGCGTTTTTACAAGCTCTCCGCTTCGCTTTCCTTTGTGATTCTCGTTTTTCTCATTGGAATGCCAATGTGGTACCTCACAACGTCGACTTATCGTGCTCCATTTCCAACCTTCCCTGCAAATAGATCAATCACTGTTGAAGTTCGTATAAACTTTGCAATAGCATCCGATGAAATGGGTGAAGATGTTCAAAAAGTAATGCCGGAGTTAGAATACAACATGACAACGAAGGAAGTTGTGGCTCCGTTGGATTTTCAATGGAGAACTCGTTTCATTGGAGTACGAAAGTTTGACGATCTTGAACGAGATCATTCATTGAAAGTTGAAGAAAAAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>500 254 154 92</canonical_bands>
                <polymorphic_bands>654 254 92</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAACTCCACATTTTTACTGGT</pcr_primer_p1>
		<pcr_primer_p2>TCTGAATCTATTTGTCGTCCTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAACTCCACATTTTTACTGGTACCATACTTGTGAGATTTCAATAAAGAATACTTTCGTTTTCATTGTTGATAAATTTAATAGTATTATGTAGTCCCTAGAAGCTCAGTCAGTATATAATAATTGTTTAAATGGCTGGTTATGAGTGACATTTGAAGAATGACGGAAGAGAAAGTAGCAACGTATGATCCGCCAACGAGTTTGAAGCAAACAATTTTCAATTTCATATTAGGACGACAAATAGATTCAGA</canonical_amplicon>
		<polymorphic_amplicon>CAAACTCCACATTTTTACTGGTACCATACTTGTGAGATTTCAATAAAGAATACTTTCGTTTTCATTGTTGATAAATTTAATAGTATTATGTAGTCCCTAGAAGCTCAGTCAGTATATAATAATTGTTTAAATGGCTGGTTATGAGTGACATTTGAAGAATGACGGAAGAGAAAGTAGCAMCGTATGATCCGCCAACGAGTTTGAAGCAAACAATTTTCAATTTCATATTAGGACGACAAATAGATTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30400</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>420667</contig_pos>
        <strand>+</strand>
        <context>AGTAGCAMCG[G/T]ATGATCCGCC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGCTGGTTATGAGTGACATTTGAAGAATGACGGAAGAGAAAGTAGCAACG</left_flank>
        <right_flank>ATGATCCGCCAACGAGTTTGAAGCAAACAATTTTCAATTTCATATTAGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATGGTTATCATTGCAATAATACAGGTAAGCATCAATTTTTCAATCATTAAACAAAATACAAAATTGCAGGTGCTCGGTATTTGTTTCGCTCAAAATCTCAAATCGGATATTCTGGCTCAACGGGCGAAATGGTACTACACTCATTAATAAATTAATCAACGATTTCTTGCACATCCTCTATGATATTCACTTCTACACAGCTTCGAATTACCAAAAAATGCCGGTCACACATCATCGCACACTTTGCAAAATACTATCACGATTCTCTCATTTTTCTTTATGTCACAATTTCATCAATTTGTTCCATTCTTGTTCCAAACTCCACATTTTTACTGGTACCATACTTGTGAGATTTCAATAAAGAATACTTTCGTTTTCATTGTTGATAAATTTAATAGTATTATGTAGTCCCTAGAAGCTCAGTCAGTATATAATAATTGTTTAAATGGCTGGTTATGAGTGACATTTGAAGAATGACGGAAGAGAAAGTAGCAACGTATGATCCGCCAACGAGTTTGAAGCAAACAATTTTCAATTTCATATTAGGACGACAAATAGATTCAGAAGAAAAAAATGAAGGAAAAATTACGGTATAGTCTGAAAGTCATAACAAAATAAAACGGGTTTTGAAGGAATCTTTCATCAAATACGTGCGAGCTGAGCGTTTTTACAAGCTCTCCGCTTCGCTTTCCTTTGTGATTCTCGTTTTTCTCATTGGAATGCCAATGTGGTACCTCACAACGTCGACTTATCGTGCTCCATTTCCAACCTTCCCTGCAAATAGATCAATCACTGTTGAAGTTCGTATAAACTTTGCAATAGCATCCGATGAAATGGGTGAAGATGTTCAAAAAGTAATGCCGGAGTTAGAATACAACATGACAACGAAGGAAGTTGTGGCTCCGTTGGATTTTCAATGGAGAACTCGTTTCATTGGAGTACGAAAGTTTGACGATCTTGAACGAGATCATTCATTGAAAGTTGAAGAAAAAGAAGAG</canonical>
            <polymorphic>CGATGGTTATCATTGCAATAATACAGGTAAGCATCAATTTTTCAATCATTAAACAAAATACAAAATTGCAGGTGCTCGGTATTTGTTTCGCTCAAAATCTCAAATCGGATATTCTGGCTCAACGGGCGAAATGGTACTACACTCATTAATAAATTAATCAACGATTTCTTGCACATCCTCTATGATATTCACTTCTACACAGCTTCGAATTACCAAAAAATGCCGGTCACACATCATCGCACACTTTGCAAAATACTATCACGATTCTCTCATTTTTCTTTATGTCACAATTTCATCAATTTGTTCCATTCTTGTTCCAAACTCCACATTTTTACTGGTACCATACTTGTGAGATTTCAATAAAGAATACTTTCGTTTTCATTGTTGATAAATTTAATAGTATTATGTAGTCCCTAGAAGCTCAGTCAGTATATAATAATTGTTTAAATGGCTGGTTATGAGTGACATTTGAAGAATGACGGAAGAGAAAGTAGCAACGKATGATCCGCCAACGAGTTTGAAGCAAACAATTTTCAATTTCATATTAGGACGACAAATAGATTCAGAAGAAAAAAATGAAGGAAAAATTACGGTATAGTCTGAAAGTCATAACAAAATAAAACGGGTTTTGAAGGAATCTTTCATCAAATACGTGCGAGCTGAGCGTTTTTACAAGCTCTCCGCTTCGCTTTCCTTTGTGATTCTCGTTTTTCTCATTGGAATGCCAATGTGGTACCTCACAACGTCGACTTATCGTGCTCCATTTCCAACCTTCCCTGCAAATAGATCAATCACTGTTGAAGTTCGTATAAACTTTGCAATAGCATCCGATGAAATGGGTGAAGATGTTCAAAAAGTAATGCCGGAGTTAGAATACAACATGACAACGAAGGAAGTTGTGGCTCCGTTGGATTTTCAATGGAGAACTCGTTTCATTGGAGTACGAAAGTTTGACGATCTTGAACGAGATCATTCATTGAAAGTTGAAGAAAAAGAAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>497 257 154 92</canonical_bands>
                <polymorphic_bands>651 257 92</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAACTCCACATTTTTACTGGT</pcr_primer_p1>
		<pcr_primer_p2>TCTGAATCTATTTGTCGTCCTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAACTCCACATTTTTACTGGTACCATACTTGTGAGATTTCAATAAAGAATACTTTCGTTTTCATTGTTGATAAATTTAATAGTATTATGTAGTCCCTAGAAGCTCAGTCAGTATATAATAATTGTTTAAATGGCTGGTTATGAGTGACATTTGAAGAATGACGGAAGAGAAAGTAGCAACGTATGATCCGCCAACGAGTTTGAAGCAAACAATTTTCAATTTCATATTAGGACGACAAATAGATTCAGA</canonical_amplicon>
		<polymorphic_amplicon>CAAACTCCACATTTTTACTGGTACCATACTTGTGAGATTTCAATAAAGAATACTTTCGTTTTCATTGTTGATAAATTTAATAGTATTATGTAGTCCCTAGAAGCTCAGTCAGTATATAATAATTGTTTAAATGGCTGGTTATGAGTGACATTTGAAGAATGACGGAAGAGAAAGTAGCAACGKATGATCCGCCAACGAGTTTGAAGCAAACAATTTTCAATTTCATATTAGGACGACAAATAGATTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30401</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>420678</contig_pos>
        <strand>+</strand>
        <context>ATGATCCGCC[A/C]ACGAGTTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTGACATTTGAAGAATGACGGAAGAGAAAGTAGCAACGTATGATCCGCC</left_flank>
        <right_flank>ACGAGTTTGAAGCAAACAATTTTCAATTTCATATTAGGACGACAAATAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGCAATAATACAGGTAAGCATCAATTTTTCAATCATTAAACAAAATACAAAATTGCAGGTGCTCGGTATTTGTTTCGCTCAAAATCTCAAATCGGATATTCTGGCTCAACGGGCGAAATGGTACTACACTCATTAATAAATTAATCAACGATTTCTTGCACATCCTCTATGATATTCACTTCTACACAGCTTCGAATTACCAAAAAATGCCGGTCACACATCATCGCACACTTTGCAAAATACTATCACGATTCTCTCATTTTTCTTTATGTCACAATTTCATCAATTTGTTCCATTCTTGTTCCAAACTCCACATTTTTACTGGTACCATACTTGTGAGATTTCAATAAAGAATACTTTCGTTTTCATTGTTGATAAATTTAATAGTATTATGTAGTCCCTAGAAGCTCAGTCAGTATATAATAATTGTTTAAATGGCTGGTTATGAGTGACATTTGAAGAATGACGGAAGAGAAAGTAGCAACGTATGATCCGCCAACGAGTTTGAAGCAAACAATTTTCAATTTCATATTAGGACGACAAATAGATTCAGAAGAAAAAAATGAAGGAAAAATTACGGTATAGTCTGAAAGTCATAACAAAATAAAACGGGTTTTGAAGGAATCTTTCATCAAATACGTGCGAGCTGAGCGTTTTTACAAGCTCTCCGCTTCGCTTTCCTTTGTGATTCTCGTTTTTCTCATTGGAATGCCAATGTGGTACCTCACAACGTCGACTTATCGTGCTCCATTTCCAACCTTCCCTGCAAATAGATCAATCACTGTTGAAGTTCGTATAAACTTTGCAATAGCATCCGATGAAATGGGTGAAGATGTTCAAAAAGTAATGCCGGAGTTAGAATACAACATGACAACGAAGGAAGTTGTGGCTCCGTTGGATTTTCAATGGAGAACTCGTTTCATTGGAGTACGAAAGTTTGACGATCTTGAACGAGATCATTCATTGAAAGTTGAAGAAAAAGAAGAGTTCTTCGATGT</canonical>
            <polymorphic>ATTGCAATAATACAGGTAAGCATCAATTTTTCAATCATTAAACAAAATACAAAATTGCAGGTGCTCGGTATTTGTTTCGCTCAAAATCTCAAATCGGATATTCTGGCTCAACGGGCGAAATGGTACTACACTCATTAATAAATTAATCAACGATTTCTTGCACATCCTCTATGATATTCACTTCTACACAGCTTCGAATTACCAAAAAATGCCGGTCACACATCATCGCACACTTTGCAAAATACTATCACGATTCTCTCATTTTTCTTTATGTCACAATTTCATCAATTTGTTCCATTCTTGTTCCAAACTCCACATTTTTACTGGTACCATACTTGTGAGATTTCAATAAAGAATACTTTCGTTTTCATTGTTGATAAATTTAATAGTATTATGTAGTCCCTAGAAGCTCAGTCAGTATATAATAATTGTTTAAATGGCTGGTTATGAGTGACATTTGAAGAATGACGGAAGAGAAAGTAGCAACGTATGATCCGCCMACGAGTTTGAAGCAAACAATTTTCAATTTCATATTAGGACGACAAATAGATTCAGAAGAAAAAAATGAAGGAAAAATTACGGTATAGTCTGAAAGTCATAACAAAATAAAACGGGTTTTGAAGGAATCTTTCATCAAATACGTGCGAGCTGAGCGTTTTTACAAGCTCTCCGCTTCGCTTTCCTTTGTGATTCTCGTTTTTCTCATTGGAATGCCAATGTGGTACCTCACAACGTCGACTTATCGTGCTCCATTTCCAACCTTCCCTGCAAATAGATCAATCACTGTTGAAGTTCGTATAAACTTTGCAATAGCATCCGATGAAATGGGTGAAGATGTTCAAAAAGTAATGCCGGAGTTAGAATACAACATGACAACGAAGGAAGTTGTGGCTCCGTTGGATTTTCAATGGAGAACTCGTTTCATTGGAGTACGAAAGTTTGACGATCTTGAACGAGATCATTCATTGAAAGTTGAAGAAAAAGAAGAGTTCTTCGATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAACTCCACATTTTTACTGGT</pcr_primer_p1>
		<pcr_primer_p2>TCTGAATCTATTTGTCGTCCTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAACTCCACATTTTTACTGGTACCATACTTGTGAGATTTCAATAAAGAATACTTTCGTTTTCATTGTTGATAAATTTAATAGTATTATGTAGTCCCTAGAAGCTCAGTCAGTATATAATAATTGTTTAAATGGCTGGTTATGAGTGACATTTGAAGAATGACGGAAGAGAAAGTAGCAACGTATGATCCGCCAACGAGTTTGAAGCAAACAATTTTCAATTTCATATTAGGACGACAAATAGATTCAGA</canonical_amplicon>
		<polymorphic_amplicon>CAAACTCCACATTTTTACTGGTACCATACTTGTGAGATTTCAATAAAGAATACTTTCGTTTTCATTGTTGATAAATTTAATAGTATTATGTAGTCCCTAGAAGCTCAGTCAGTATATAATAATTGTTTAAATGGCTGGTTATGAGTGACATTTGAAGAATGACGGAAGAGAAAGTAGCAACGTATGATCCGCCMACGAGTTTGAAGCAAACAATTTTCAATTTCATATTAGGACGACAAATAGATTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30402</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>442428</contig_pos>
        <strand>+</strand>
        <context>CTCCTTCCTC[C/T]ATGTCGATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGATGACCAATTTGTCGTTAGGAGTAGCTCCCAATGGTTCTCCTTCCTC</left_flank>
        <right_flank>ATGTCGATTTTAACTTCGATCATCTTCTCGGATCCCATGTTGTCTGGACG</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACAGGAATTCCGTCAACATCGCACAAGTGGTCACCAAGAACCAAGCATTTCTCCGCAAGTGAACCTGGATCGACACGGGAAACCAGAACGCGATTCTGAAAGTAGTTATTGATTATCAGGCGATATAGAAGTAACTCTGGTAACCTGATAATGCTTGATTCCCAAACCCAACTTTGGTCCGTTCTGCACCCAAACCAATGTAGCCATCTCGTAGACGTATCCCTCACGACGTTGAATGATCTTGGCACGATCTTCTGGAATGTGCACACGTGCTTCCAACTCCTCCGCTTTCTTCTCATCGCGGTTGACCAGAATACGAGCAAGTGGAGTAGCATAACGAAGAGCACGGAAGAAGTCGTTTGCATCCTTACACTCGACGTCGTTCACCTTCTTCACTTGATCACCGACTCTCAATTTTCCTTCCGAGATGGTTCCGCTTTGAATCTTAGTGATGACCAATTTGTCGTTAGGAGTAGCTCCCAATGGTTCTCCTTCCTCCATGTCGATTTTAACTTCGATCATCTTCTCGGATCCCATGTTGTCTGGACGAGTGACGTTCTTGCTTTTCGAGTTCTTTCGATATGCACTAAACTGGTCGTTTTTCTCTTAATCAGTTATTTTTATATGAAAAAAAATGAACTATTTATAGTTGGATCTTATAAAAGAGTTCAAGTTTCAATTGAAATTTCAAATTACAGATACACGCCAGCCCTTCGAGATCTGCGCGGAGTTGCATGGTGTGTTCAGCTGAGTGCCACCAAGCAAGATGCACTTGCCAAACGTCTTGAACAGATTTGCGACATGGAAAACCTCCGTTGTGATTTGAGCACACTGAGAAAGTTATGTGATTTGTGTGCAAACGATATGAGACATTCCATCAACACACTACAATGGGCCGCTGTTGCTTCAAACAAAACGAAACGATCCATCACTATGAAGCTGATTCACGAGGTTTCAGTGTCTGAAAAATGTCTTGCAGAAAATGATTTTTACAGGTTG</canonical>
            <polymorphic>GACAGGAATTCCGTCAACATCGCACAAGTGGTCACCAAGAACCAAGCATTTCTCCGCAAGTGAACCTGGATCGACACGGGAAACCAGAACGCGATTCTGAAAGTAGTTATTGATTATCAGGCGATATAGAAGTAACTCTGGTAACCTGATAATGCTTGATTCCCAAACCCAACTTTGGTCCGTTCTGCACCCAAACCAATGTAGCCATCTCGTAGACGTATCCCTCACGACGTTGAATGATCTTGGCACGATCTTCTGGAATGTGCACACGTGCTTCCAACTCCTCCGCTTTCTTCTCATCGCGGTTGACCAGAATACGAGCAAGTGGAGTAGCATAACGAAGAGCACGGAAGAAGTCGTTTGCATCCTTACACTCGACGTCGTTCACCTTCTTCACTTGATCACCGACTCTCAATTTTCCTTCCGAGATGGTTCCGCTTTGAATCTTAGTGATGACCAATTTGTCGTTAGGAGTAGCTCCCAATGGTTCTCCTTCCTCYATGTCGATTTTAACTTCGATCATCTTCTCGGATCCCATGTTGTCTGGACGAGTGACGTTCTTGCTTTTCGAGTTCTTTCGATATGCACTAAACTGGTCGTTTTTCTCTTAATCAGTTATTTTTATATGAAAAAAAATGAACTATTTATAGTTGGATCTTATAAAAGAGTTCAAGTTTCAATTGAAATTTCAAATTACAGATACACGCCAGCCCTTCGAGATCTGCGCGGAGTTGCATGGTGTGTTCAGCTGAGTGCCACCAAGCAAGATGCACTTGCCAAACGTCTTGAACAGATTTGCGACATGGAAAACCTCCGTTGTGATTTGAGCACACTGAGAAAGTTATGTGATTTGTGTGCAAACGATATGAGACATTCCATCAACACACTACAATGGGCCGCTGTTGCTTCAAACAAAACGAAACGATCCATCACTATGAAGCTGATTCACGAGGTTTCAGTGTCTGAAAAATGTCTTGCAGAAAATGATTTTTACAGGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 199 198 67 36</canonical_bands>
                <polymorphic_bands>536 199 198 67</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTTGAATCTTAGTGATGACC</pcr_primer_p1>
		<pcr_primer_p2>TCAATTGAAACTTGAACTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCTTTGAATCTTAGTGATGACCAATTTGTCGTTAGGAGTAGCTCCCAATGGTTCTCCTTCCTCCATGTCGATTTTAACTTCGATCATCTTCTCGGATCCCATGTTGTCTGGACGAGTGACGTTCTTGCTTTTCGAGTTCTTTCGATATGCACTAAACTGGTCGTTTTTCTCTTAATCAGTTATTTTTATATGAAAAAAAATGAACTATTTATAGTTGGATCTTATAAAAGAGTTCAAGTTTCAATTGA</canonical_amplicon>
		<polymorphic_amplicon>GCTTTGAATCTTAGTGATGACCAATTTGTCGTTAGGAGTAGCTCCCAATGGTTCTCCTTCCTCYATGTCGATTTTAACTTCGATCATCTTCTCGGATCCCATGTTGTCTGGACGAGTGACGTTCTTGCTTTTCGAGTTCTTTCGATATGCACTAAACTGGTCGTTTTTCTCTTAATCAGTTATTTTTATATGAAAAAAAATGAACTATTTATAGTTGGATCTTATAAAAGAGTTCAAGTTTCAATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30403</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>444088</contig_pos>
        <strand></strand>
        <context>gattactgta[T/G]attactgtag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTTTGTCTGAATTTTGATTGAACGGTGTTTGATTACTGTAGATTACTGTA</left_flank>
        <right_flank>ATTACTGTAGATTACTGTAGAAAACTCATTTCCTTTTTTGTTTTTTGCAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAACGGTTTCTGTCATGTGTGATTACGGATTAACATATACGGCCACTATGATCAAGGATCAAATCAACTGGCTCTTCACTCCTGCTATTGATGTTCTCACAATGTTTCCATTGGAAGAACCAAAACGGCCCTACCTCGCCAACGCCACAAGGCAGTTGATTGCTCATAAGGTATTTTTCGAAAGCATTCTAGGCCCTGAAACGGTAAAGACCTACTGATGTACACAGTGTAGAAAATATGTAGTTCATATAGAAACAAAGAAAAAACAATTCAAAAGGATGTGCAAAATCTCGAAAAATCGTTTCTCGCCCTTTTCTGAAAACTCCGAAAAATGCGCAACTTTTTCGAAAGAAAAATGTATTTTTTATTAAATATTTGCAAAATATTTTTGACCTTTTTAGGTTTTTCAGCTATTTTCAAAGATTCTTTTTCGATTGTTCCAGTTTTTTTTGTCTGAATTTTGATTGAACGGTGTTTGATTACTGTAGATTACTGTATATTACTGTAGATTACTGTAGAAAACTCATTTCCTTTTTTGTTTTTTGCAAACACAATCACGTCAAAATGCTGAAAAAAACTTTTTTTGAAAAAAAAAACTACAAAATAGAAGGTTTTCTACATTAATCTACAGTAATCTTTGCGAACACTGTCCTGTCAAATTTAAGACAAAAAATTCGGAATAATCAAAGAAGAATTATGAAAATTAGTTGAAAAACCAAAAAAGGTCTAAAAAGCTTGCAAAAAATTGAGGAATAAAACTTTTTTTTCTCGAGAGAGAAATATCGGGAATCAAGGGGGGATGTAATTTTTTACTTTCTGATATTTCGTCACCCAGATTTTCAGTTCTAGGGCCTGCGAGTATTCCAAGTGAGACAACAAATTTCAGATTACACTGACACGTGTTCGACTAGCTGATCACACTCCACAGCAGCAGTCCGAACGAATCACGACTAATACGGACAAAATCAAGGAGATTATCGACACAGAAAATCAGAAGA</canonical>
            <polymorphic>TCAAACGGTTTCTGTCATGTGTGATTACGGATTAACATATACGGCCACTATGATCAAGGATCAAATCAACTGGCTCTTCACTCCTGCTATTGATGTTCTCACAATGTTTCCATTGGAAGAACCAAAACGGCCCTACCTCGCCAACGCCACAAGGCAGTTGATTGCTCATAAGGTATTTTTCGAAAGCATTCTAGGCCCTGAAACGGTAAAGACCTACTGATGTACACAGTGTAGAAAATATGTAGTTCATATAGAAACAAAGAAAAAACAATTCAAAAGGATGTGCAAAATCTCGAAAAATCGTTTCTCGCCCTTTTCTGAAAACTCCGAAAAATGCGCAACTTTTTCGAAAGAAAAATGTATTTTTTATTAAATATTTGCAAAATATTTTTGACCTTTTTAGGTTTTTCAGCTATTTTCAAAGATTCTTTTTCGATTGTTCCAGTTTTTTTTGTCTGAATTTTGATTGAACGGTGTTTGATTACTGTAGATTACTGTAKATTACTGTAGATTACTGTAGAAAACTCATTTCCTTTTTTGTTTTTTGCAAACACAATCACGTCAAAATGCTGAAAAAAACTTTTTTTGAAAAAAAAAACTACAAAATAGAAGGTTTTCTACATTAATCTACAGTAATCTTTGCGAACACTGTCCTGTCAAATTTAAGACAAAAAATTCGGAATAATCAAAGAAGAATTATGAAAATTAGTTGAAAAACCAAAAAAGGTCTAAAAAGCTTGCAAAAAATTGAGGAATAAAACTTTTTTTTCTCGAGAGAGAAATATCGGGAATCAAGGGGGGATGTAATTTTTTACTTTCTGATATTTCGTCACCCAGATTTTCAGTTCTAGGGCCTGCGAGTATTCCAAGTGAGACAACAAATTTCAGATTACACTGACACGTGTTCGACTAGCTGATCACACTCCACAGCAGCAGTCCGAACGAATCACGACTAATACGGACAAAATCAAGGAGATTATCGACACAGAAAATCAGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACGGTAAAGACCTACTGATGTA</pcr_primer_p1>
		<pcr_primer_p2>TTTGTTGTCTCACTTGGAATACT</pcr_primer_p2>
		<pcr_amplicon_size>681</pcr_amplicon_size>
		<canonical_amplicon>AACGGTAAAGACCTACTGATGTACACAGTGTAGAAAATATGTAGTTCATATAGAAACAAAGAAAAAACAATTCAAAAGGATGTGCAAAATCTCGAAAAATCGTTTCTCGCCCTTTTCTGAAAACTCCGAAAAATGCGCAACTTTTTCGAAAGAAAAATGTATTTTTTATTAAATATTTGCAAAATATTTTTGACCTTTTTAGGTTTTTCAGCTATTTTCAAAGATTCTTTTTCGATTGTTCCAGTTTTTTTTGTCTGAATTTTGATTGAACGGTGTTTGATTACTGTAGATTACTGTATATTACTGTAGATTACTGTAGAAAACTCATTTCCTTTTTTGTTTTTTGCAAACACAATCACGTCAAAATGCTGAAAAAAACTTTTTTTGAAAAAAAAAACTACAAAATAGAAGGTTTTCTACATTAATCTACAGTAATCTTTGCGAACACTGTCCTGTCAAATTTAAGACAAAAAATTCGGAATAATCAAAGAAGAATTATGAAAATTAGTTGAAAAACCAAAAAAGGTCTAAAAAGCTTGCAAAAAATTGAGGAATAAAACTTTTTTTTCTCGAGAGAGAAATATCGGGAATCAAGGGGGGATGTAATTTTTTACTTTCTGATATTTCGTCACCCAGATTTTCAGTTCTAGGGCCTGCGAGTATTCCAAGTGAGACAACAAA</canonical_amplicon>
		<polymorphic_amplicon>AACGGTAAAGACCTACTGATGTACACAGTGTAGAAAATATGTAGTTCATATAGAAACAAAGAAAAAACAATTCAAAAGGATGTGCAAAATCTCGAAAAATCGTTTCTCGCCCTTTTCTGAAAACTCCGAAAAATGCGCAACTTTTTCGAAAGAAAAATGTATTTTTTATTAAATATTTGCAAAATATTTTTGACCTTTTTAGGTTTTTCAGCTATTTTCAAAGATTCTTTTTCGATTGTTCCAGTTTTTTTTGTCTGAATTTTGATTGAACGGTGTTTGATTACTGTAGATTACTGTAKATTACTGTAGATTACTGTAGAAAACTCATTTCCTTTTTTGTTTTTTGCAAACACAATCACGTCAAAATGCTGAAAAAAACTTTTTTTGAAAAAAAAAACTACAAAATAGAAGGTTTTCTACATTAATCTACAGTAATCTTTGCGAACACTGTCCTGTCAAATTTAAGACAAAAAATTCGGAATAATCAAAGAAGAATTATGAAAATTAGTTGAAAAACCAAAAAAGGTCTAAAAAGCTTGCAAAAAATTGAGGAATAAAACTTTTTTTTCTCGAGAGAGAAATATCGGGAATCAAGGGGGGATGTAATTTTTTACTTTCTGATATTTCGTCACCCAGATTTTCAGTTCTAGGGCCTGCGAGTATTCCAAGTGAGACAACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30404</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>444821</contig_pos>
        <strand>+</strand>
        <context>TTCCCATGCA[A/G]AWCTATTTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATTTTGATTCTATTGTGAATACTTATCCTATTTTCTCTTTCCCATGCA</left_flank>
        <right_flank>AACTATTTAATAGAGCGATTTTTGCTCATTTTTCATTCATATCATCATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCTTGCAAAAAATTGAGGAATAAAACTTTTTTTTCTCGAGAGAGAAATATCGGGAATCAAGGGGGGATGTAATTTTTTACTTTCTGATATTTCGTCACCCAGATTTTCAGTTCTAGGGCCTGCGAGTATTCCAAGTGAGACAACAAATTTCAGATTACACTGACACGTGTTCGACTAGCTGATCACACTCCACAGCAGCAGTCCGAACGAATCACGACTAATACGGACAAAATCAAGGAGATTATCGACACAGAAAATCAGAAGAAGAAAAAGCGTCTTTCAGCTGGAGCCATGAAGCGTAAAGAACAAGGAAAACATTCCGATGTCATTTTCACACATCAGGATGGAGACAGTAATGCTGTGAAGAAGAAGGTCACGATTCAACAGCTGAATTCGATAATTTTTGGAGAATCGTAAATTGAATTGTAAACGAGTTGTAATTTTTTTTCATTTTGATTCTATTGTGAATACTTATCCTATTTTCTCTTTCCCATGCAAAACTATTTAATAGAGCGATTTTTGCTCATTTTTCATTCATATCATCATTCAAATTCCACTTAACGAATGCAATAAAACCTTTTGAATTTCATAATTTCCATTTTTAAAAAGAGCCTTTTGCCATTAGAAAAGTTCGTCGAGTGGGCGAGCTGTAATTTGCTTAAATTCCAACATTTTCCGAGAAATTTGGGGGATAATGAATGGTGAGGTGACATATTTGAAATTCTAAAATAACAACCTTAAGTCGAGATGTGTAGCATATAATTTATTCTTCTAAACTTCAATTTTTCTTCATTTTCTCTCAATTTCGATGTTGAGATTAGGCCAATTCCTTCTTTTATTCAACCTAATTTCCAATATTTTTTCTTCTGAAAACTGCAATTTTAATGTGCATTATCTAACATCATCAAGTCAATTTCCATCCAATTGTTCTCAGCTGATTGGAAGATTCCGAATCGATCAAAATACTGATCTGACGAGTGATCAACTTGTGAAGCTTT</canonical>
            <polymorphic>AAGCTTGCAAAAAATTGAGGAATAAAACTTTTTTTTCTCGAGAGAGAAATATCGGGAATCAAGGGGGGATGTAATTTTTTACTTTCTGATATTTCGTCACCCAGATTTTCAGTTCTAGGGCCTGCGAGTATTCCAAGTGAGACAACAAATTTCAGATTACACTGACACGTGTTCGACTAGCTGATCACACTCCACAGCAGCAGTCCGAACGAATCACGACTAATACGGACAAAATCAAGGAGATTATCGACACAGAAAATCAGAAGAAGAAAAAGCGTCTTTCAGCTGGAGCCATGAAGCGTAAAGAACAAGGAAAACATTCCGATGTCATTTTCACACATCAGGATGGAGACAGTAATGCTGTGAAGAAGAAGGTCACGATTCAACAGCTGAATTCGATAATTTTTGGAGAATCGTAAATTGAATTGTAAACGAGTTGTAATTTTTTTTCATTTTGATTCTATTGTGAATACTTATCCTATTTTCTCTTTCCCATGCARAACTATTTAATAGAGCGATTTTTGCTCATTTTTCATTCATATCATCATTCAAATTCCACTTAACGAATGCAATAAAACCTTTTGAATTTCATAATTTCCATTTTTAAAAAGAGCCTTTTGCCATTAGAAAAGTTCGTCGAGTGGGCGAGCTGTAATTTGCTTAAATTCCAACATTTTCCGAGAAATTTGGGGGATAATGAATGGTGAGGTGACATATTTGAAATTCTAAAATAACAACCTTAAGTCGAGATGTGTAGCATATAATTTATTCTTCTAAACTTCAATTTTTCTTCATTTTCTCTCAATTTCGATGTTGAGATTAGGCCAATTCCTTCTTTTATTCAACCTAATTTCCAATATTTTTTCTTCTGAAAACTGCAATTTTAATGTGCATTATCTAACATCATCAAGTCAATTTCCATCCAATTGTTCTCAGCTGATTGGAAGATTCCGAATCGATCAAAATACTGATCTGACGAGTGATCAACTTGTGAAGCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGACAGTAATGCTGTGAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>ATGAAATTCAAAAGGTTTTATTG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GAGACAGTAATGCTGTGAAGAAGAAGGTCACGATTCAACAGCTGAATTCGATAATTTTTGGAGAATCGTAAATTGAATTGTAAACGAGTTGTAATTTTTTTTCATTTTGATTCTATTGTGAATACTTATCCTATTTTCTCTTTCCCATGCAAAACTATTTAATAGAGCGATTTTTGCTCATTTTTCATTCATATCATCATTCAAATTCCACTTAACGAATGCAATAAAACCTTTTGAATTTCAT</canonical_amplicon>
		<polymorphic_amplicon>GAGACAGTAATGCTGTGAAGAAGAAGGTCACGATTCAACAGCTGAATTCGATAATTTTTGGAGAATCGTAAATTGAATTGTAAACGAGTTGTAATTTTTTTTCATTTTGATTCTATTGTGAATACTTATCCTATTTTCTCTTTCCCATGCARAACTATTTAATAGAGCGATTTTTGCTCATTTTTCATTCATATCATCATTCAAATTCCACTTAACGAATGCAATAAAACCTTTTGAATTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30405</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>444823</contig_pos>
        <strand>+</strand>
        <context>CCCATGCARA[A/T]CTATTTAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTGATTCTATTGTGAATACTTATCCTATTTTCTCTTTCCCATGCAAA</left_flank>
        <right_flank>CTATTTAATAGAGCGATTTTTGCTCATTTTTCATTCATATCATCATTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTGCAAAAAATTGAGGAATAAAACTTTTTTTTCTCGAGAGAGAAATATCGGGAATCAAGGGGGGATGTAATTTTTTACTTTCTGATATTTCGTCACCCAGATTTTCAGTTCTAGGGCCTGCGAGTATTCCAAGTGAGACAACAAATTTCAGATTACACTGACACGTGTTCGACTAGCTGATCACACTCCACAGCAGCAGTCCGAACGAATCACGACTAATACGGACAAAATCAAGGAGATTATCGACACAGAAAATCAGAAGAAGAAAAAGCGTCTTTCAGCTGGAGCCATGAAGCGTAAAGAACAAGGAAAACATTCCGATGTCATTTTCACACATCAGGATGGAGACAGTAATGCTGTGAAGAAGAAGGTCACGATTCAACAGCTGAATTCGATAATTTTTGGAGAATCGTAAATTGAATTGTAAACGAGTTGTAATTTTTTTTCATTTTGATTCTATTGTGAATACTTATCCTATTTTCTCTTTCCCATGCAAAACTATTTAATAGAGCGATTTTTGCTCATTTTTCATTCATATCATCATTCAAATTCCACTTAACGAATGCAATAAAACCTTTTGAATTTCATAATTTCCATTTTTAAAAAGAGCCTTTTGCCATTAGAAAAGTTCGTCGAGTGGGCGAGCTGTAATTTGCTTAAATTCCAACATTTTCCGAGAAATTTGGGGGATAATGAATGGTGAGGTGACATATTTGAAATTCTAAAATAACAACCTTAAGTCGAGATGTGTAGCATATAATTTATTCTTCTAAACTTCAATTTTTCTTCATTTTCTCTCAATTTCGATGTTGAGATTAGGCCAATTCCTTCTTTTATTCAACCTAATTTCCAATATTTTTTCTTCTGAAAACTGCAATTTTAATGTGCATTATCTAACATCATCAAGTCAATTTCCATCCAATTGTTCTCAGCTGATTGGAAGATTCCGAATCGATCAAAATACTGATCTGACGAGTGATCAACTTGTGAAGCTTTTC</canonical>
            <polymorphic>GCTTGCAAAAAATTGAGGAATAAAACTTTTTTTTCTCGAGAGAGAAATATCGGGAATCAAGGGGGGATGTAATTTTTTACTTTCTGATATTTCGTCACCCAGATTTTCAGTTCTAGGGCCTGCGAGTATTCCAAGTGAGACAACAAATTTCAGATTACACTGACACGTGTTCGACTAGCTGATCACACTCCACAGCAGCAGTCCGAACGAATCACGACTAATACGGACAAAATCAAGGAGATTATCGACACAGAAAATCAGAAGAAGAAAAAGCGTCTTTCAGCTGGAGCCATGAAGCGTAAAGAACAAGGAAAACATTCCGATGTCATTTTCACACATCAGGATGGAGACAGTAATGCTGTGAAGAAGAAGGTCACGATTCAACAGCTGAATTCGATAATTTTTGGAGAATCGTAAATTGAATTGTAAACGAGTTGTAATTTTTTTTCATTTTGATTCTATTGTGAATACTTATCCTATTTTCTCTTTCCCATGCAAAWCTATTTAATAGAGCGATTTTTGCTCATTTTTCATTCATATCATCATTCAAATTCCACTTAACGAATGCAATAAAACCTTTTGAATTTCATAATTTCCATTTTTAAAAAGAGCCTTTTGCCATTAGAAAAGTTCGTCGAGTGGGCGAGCTGTAATTTGCTTAAATTCCAACATTTTCCGAGAAATTTGGGGGATAATGAATGGTGAGGTGACATATTTGAAATTCTAAAATAACAACCTTAAGTCGAGATGTGTAGCATATAATTTATTCTTCTAAACTTCAATTTTTCTTCATTTTCTCTCAATTTCGATGTTGAGATTAGGCCAATTCCTTCTTTTATTCAACCTAATTTCCAATATTTTTTCTTCTGAAAACTGCAATTTTAATGTGCATTATCTAACATCATCAAGTCAATTTCCATCCAATTGTTCTCAGCTGATTGGAAGATTCCGAATCGATCAAAATACTGATCTGACGAGTGATCAACTTGTGAAGCTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGACAGTAATGCTGTGAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>ATGAAATTCAAAAGGTTTTATTG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GAGACAGTAATGCTGTGAAGAAGAAGGTCACGATTCAACAGCTGAATTCGATAATTTTTGGAGAATCGTAAATTGAATTGTAAACGAGTTGTAATTTTTTTTCATTTTGATTCTATTGTGAATACTTATCCTATTTTCTCTTTCCCATGCAAAACTATTTAATAGAGCGATTTTTGCTCATTTTTCATTCATATCATCATTCAAATTCCACTTAACGAATGCAATAAAACCTTTTGAATTTCAT</canonical_amplicon>
		<polymorphic_amplicon>GAGACAGTAATGCTGTGAAGAAGAAGGTCACGATTCAACAGCTGAATTCGATAATTTTTGGAGAATCGTAAATTGAATTGTAAACGAGTTGTAATTTTTTTTCATTTTGATTCTATTGTGAATACTTATCCTATTTTCTCTTTCCCATGCAAAWCTATTTAATAGAGCGATTTTTGCTCATTTTTCATTCATATCATCATTCAAATTCCACTTAACGAATGCAATAAAACCTTTTGAATTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30406</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>592632</contig_pos>
        <strand>+</strand>
        <context>AAAGAGTTCC[A/G]GGAAAATGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGATACTGAAAAAGAAGGATTGTACTTTGAATACCGGGAAAAGAGTTCC</left_flank>
        <right_flank>GGAAAATGAAGAGGTCGAATTTGATGAAAGGAGTCTTGAGATTCAAACAA</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACTTGAATCTCAGAATACTTTAACCTAATCCTGCATTTGTATAAAAAACTGTTAGTCACTACTACTAGAGATTATGATACTAAACGAAAAATCTACGAAATAACTGATAGAAGTTAATTTCTCAAAAGTCTCTGGGGGTTAGTCTTACATGGGGAAACGAGTCATTTCCAATGTAATGAATGAACGAAGCAATTGCATCACACGTGTCGTTGTCCATTGAAGATGAAGCTGATGATGTGTCATCTTCGATCTGAAATTTGTACTTTCCAGAAGATTCTATAATTGAAAAACCAGTTGTATTATCACCTCTACGTTCTCTTCCTCTTCCAGTTCTTCCTCCAATAATTCTCCCTCTTCATCTGCAATATGTGGTTCAGCCGTTTGTGATTCGTTTACTGAATTATCTTCGTATGATGATGTGGCAGAGGATGACGTCATCACTTGGTCAGGGATACTGAAAAAGAAGGATTGTACTTTGAATACCGGGAAAAGAGTTCCAGGAAAATGAAGAGGTCGAATTTGATGAAAGGAGTCTTGAGATTCAAACAAAGACAATAAATTTTCATTGGGGAGAACTGAGAAGAAGGCCGGGAAGAGAGGAGGACAGGGAAACGAACAACGTACCAGACTTTCGGAGACAAATTGATTTGACTATGTATTTGGAAAAGACTCGGATTAATTTTAAACTGATTGGAATGATGCTCCGGGTTTTCACTTTCTTCTCAAAACGTTGAATTCGAACTGCAACCGGTGGCACTTCATTTTTCCTCTTACAGGCACGTAACTACCCGGACTAAAATTTGGAATGTCCTCCAATTTTAGTGAAGTGTTGTAATGGGTTCAAAGTTGGAGTTCAAAAATTCAAATAACTCATCAGTAAACTGTCCAAATTTCAAATTATTTGATCAATTTTGAGCTGAGTTATCGTTTTTCAATGTTGCTTCATCTCAAATCAGACATTACATCTTTGGACTATCATAACTAAACCTAGACTCGAGG</canonical>
            <polymorphic>GACTTGAATCTCAGAATACTTTAACCTAATCCTGCATTTGTATAAAAAACTGTTAGTCACTACTACTAGAGATTATGATACTAAACGAAAAATCTACGAAATAACTGATAGAAGTTAATTTCTCAAAAGTCTCTGGGGGTTAGTCTTACATGGGGAAACGAGTCATTTCCAATGTAATGAATGAACGAAGCAATTGCATCACACGTGTCGTTGTCCATTGAAGATGAAGCTGATGATGTGTCATCTTCGATCTGAAATTTGTACTTTCCAGAAGATTCTATAATTGAAAAACCAGTTGTATTATCACCTCTACGTTCTCTTCCTCTTCCAGTTCTTCCTCCAATAATTCTCCCTCTTCATCTGCAATATGTGGTTCAGCCGTTTGTGATTCGTTTACTGAATTATCTTCGTATGATGATGTGGCAGAGGATGACGTCATCACTTGGTCAGGGATACTGAAAAAGAAGGATTGTACTTTGAATACCGGGAAAAGAGTTCCRGGAAAATGAAGAGGTCGAATTTGATGAAAGGAGTCTTGAGATTCAAACAAAGACAATAAATTTTCATTGGGGAGAACTGAGAAGAAGGCCGGGAAGAGAGGAGGACAGGGAAACGAACAACGTACCAGACTTTCGGAGACAAATTGATTTGACTATGTATTTGGAAAAGACTCGGATTAATTTTAAACTGATTGGAATGATGCTCCGGGTTTTCACTTTCTTCTCAAAACGTTGAATTCGAACTGCAACCGGTGGCACTTCATTTTTCCTCTTACAGGCACGTAACTACCCGGACTAAAATTTGGAATGTCCTCCAATTTTAGTGAAGTGTTGTAATGGGTTCAAAGTTGGAGTTCAAAAATTCAAATAACTCATCAGTAAACTGTCCAAATTTCAAATTATTTGATCAATTTTGAGCTGAGTTATCGTTTTTCAATGTTGCTTCATCTCAAATCAGACATTACATCTTTGGACTATCATAACTAAACCTAGACTCGAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCAGGGATACTGAAAAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TCAGTTTAAAATTAATCCGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTCAGGGATACTGAAAAAGAAGGATTGTACTTTGAATACCGGGAAAAGAGTTCCAGGAAAATGAAGAGGTCGAATTTGATGAAAGGAGTCTTGAGATTCAAACAAAGACAATAAATTTTCATTGGGGAGAACTGAGAAGAAGGCCGGGAAGAGAGGAGGACAGGGAAACGAACAACGTACCAGACTTTCGGAGACAAATTGATTTGACTATGTATTTGGAAAAGACTCGGATTAATTTTAAACTGA</canonical_amplicon>
		<polymorphic_amplicon>GTCAGGGATACTGAAAAAGAAGGATTGTACTTTGAATACCGGGAAAAGAGTTCCRGGAAAATGAAGAGGTCGAATTTGATGAAAGGAGTCTTGAGATTCAAACAAAGACAATAAATTTTCATTGGGGAGAACTGAGAAGAAGGCCGGGAAGAGAGGAGGACAGGGAAACGAACAACGTACCAGACTTTCGGAGACAAATTGATTTGACTATGTATTTGGAAAAGACTCGGATTAATTTTAAACTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30407</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>620450</contig_pos>
        <strand>+</strand>
        <context>ATGATTCAGA[C/T]CAACGGAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCCCAACTTCCATGTACCAGTATTATAATCAAAGTAAAAATGATTCAGA</left_flank>
        <right_flank>CAACGGAGAAGAGAAATACGAACACCGTCGAGCTGCAAATAAGCTCCGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGTGAAATAAAAGGGAAAATAGGAGATAAGTTTAAAAAATCAAATGTTTCAGATGGAAAGGGAAAAGAACAGAACCAAACTACTGTATGAGCTCAAACCTGTAAGCGTCTTCTAAATATTTTTTATTATTCTAGTACAAAAAAATAGGAGCTCAAATCGGAAGCAAAACACCGGTGGCCGACCGAAGGTCTCGCAACGACAACTACCGTAATCTGAAAATATTTTTATATTCCGTATTTATCTTCGATTTTCGTGCGTTTTCAGTCAATTTTTTAATTTTGTCAGAAATCAGAAAATCAATTTTCGGACTTTTTTTGGAAACGTAACAGAAAGCTCGACGGAAGGAAATGAAAAACGAGAAAACAAATACGGAAATAAAAATAATTCAAGTTACGGTAGTTGTCGTTGTGGAACATTCGGCCACGGCCACCGGAGATTCTCTTCCATGCCCCAACTTCCATGTACCAGTATTATAATCAAAGTAAAAATGATTCAGACCAACGGAGAAGAGAAATACGAACACCGTCGAGCTGCAAATAAGCTCCGAGCTGACCATGATTTGAAGCGTGAAAAGGGAAAGATTTTCGGAGGAAAAAAGAAAAAAGAAGGCGAATACATGGCATGTGAATCTCTTCGGGAAAGAGGAGAAAAGCACGAAAACGAGAAGGAAGAAAATATTCCGATTGGCGAACATTTGGATATCAAGAAAAGATCGTTGGCTTACCGAGAAATGCTCAATACCGGAGAAGAAATGAAATTCGAGGGCAGTCCACAGATCGACGACGCATCCTTGGATCAGGATGGTCCGTAGAAAGCTTATTGAATAAAGAATTGAACTATTCACATAACTTTATTCTAAAAAGGCACATAAAAGTCTGAGCTTCACAACCGTACTCAAAATTAATTACACTTGATATTATCGAAAAAAAGCCATAACAAAAAAAGAAAAGCTCTTGAATAACCGGAGGTCCTACAAAAAAAAACTAAAAAATCTAAAT</canonical>
            <polymorphic>AAGGTGAAATAAAAGGGAAAATAGGAGATAAGTTTAAAAAATCAAATGTTTCAGATGGAAAGGGAAAAGAACAGAACCAAACTACTGTATGAGCTCAAACCTGTAAGCGTCTTCTAAATATTTTTTATTATTCTAGTACAAAAAAATAGGAGCTCAAATCGGAAGCAAAACACCGGTGGCCGACCGAAGGTCTCGCAACGACAACTACCGTAATCTGAAAATATTTTTATATTCCGTATTTATCTTCGATTTTCGTGCGTTTTCAGTCAATTTTTTAATTTTGTCAGAAATCAGAAAATCAATTTTCGGACTTTTTTTGGAAACGTAACAGAAAGCTCGACGGAAGGAAATGAAAAACGAGAAAACAAATACGGAAATAAAAATAATTCAAGTTACGGTAGTTGTCGTTGTGGAACATTCGGCCACGGCCACCGGAGATTCTCTTCCATGCCCCAACTTCCATGTACCAGTATTATAATCAAAGTAAAAATGATTCAGAYCAACGGAGAAGAGAAATACGAACACCGTCGAGCTGCAAATAAGCTCCGAGCTGACCATGATTTGAAGCGTGAAAAGGGAAAGATTTTCGGAGGAAAAAAGAAAAAAGAAGGCGAATACATGGCATGTGAATCTCTTCGGGAAAGAGGAGAAAAGCACGAAAACGAGAAGGAAGAAAATATTCCGATTGGCGAACATTTGGATATCAAGAAAAGATCGTTGGCTTACCGAGAAATGCTCAATACCGGAGAAGAAATGAAATTCGAGGGCAGTCCACAGATCGACGACGCATCCTTGGATCAGGATGGTCCGTAGAAAGCTTATTGAATAAAGAATTGAACTATTCACATAACTTTATTCTAAAAAGGCACATAAAAGTCTGAGCTTCACAACCGTACTCAAAATTAATTACACTTGATATTATCGAAAAAAAGCCATAACAAAAAAAGAAAAGCTCTTGAATAACCGGAGGTCCTACAAAAAAAAACTAAAAAATCTAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCTGTAAGCGTCTTCTAAATA</pcr_primer_p1>
		<pcr_primer_p2>CTTCAAATCATGGTCAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>470</pcr_amplicon_size>
		<canonical_amplicon>AACCTGTAAGCGTCTTCTAAATATTTTTTATTATTCTAGTACAAAAAAATAGGAGCTCAAATCGGAAGCAAAACACCGGTGGCCGACCGAAGGTCTCGCAACGACAACTACCGTAATCTGAAAATATTTTTATATTCCGTATTTATCTTCGATTTTCGTGCGTTTTCAGTCAATTTTTTAATTTTGTCAGAAATCAGAAAATCAATTTTCGGACTTTTTTTGGAAACGTAACAGAAAGCTCGACGGAAGGAAATGAAAAACGAGAAAACAAATACGGAAATAAAAATAATTCAAGTTACGGTAGTTGTCGTTGTGGAACATTCGGCCACGGCCACCGGAGATTCTCTTCCATGCCCCAACTTCCATGTACCAGTATTATAATCAAAGTAAAAATGATTCAGACCAACGGAGAAGAGAAATACGAACACCGTCGAGCTGCAAATAAGCTCCGAGCTGACCATGATTTGAAG</canonical_amplicon>
		<polymorphic_amplicon>AACCTGTAAGCGTCTTCTAAATATTTTTTATTATTCTAGTACAAAAAAATAGGAGCTCAAATCGGAAGCAAAACACCGGTGGCCGACCGAAGGTCTCGCAACGACAACTACCGTAATCTGAAAATATTTTTATATTCCGTATTTATCTTCGATTTTCGTGCGTTTTCAGTCAATTTTTTAATTTTGTCAGAAATCAGAAAATCAATTTTCGGACTTTTTTTGGAAACGTAACAGAAAGCTCGACGGAAGGAAATGAAAAACGAGAAAACAAATACGGAAATAAAAATAATTCAAGTTACGGTAGTTGTCGTTGTGGAACATTCGGCCACGGCCACCGGAGATTCTCTTCCATGCCCCAACTTCCATGTACCAGTATTATAATCAAAGTAAAAATGATTCAGAYCAACGGAGAAGAGAAATACGAACACCGTCGAGCTGCAAATAAGCTCCGAGCTGACCATGATTTGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30408</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>704419</contig_pos>
        <strand>+</strand>
        <context>AATAACATAA[A/T]TTTGTAGTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTCTTATAGCTTGGTCGGTAGACAAGATACAGTTTATCAAATAACATAA</left_flank>
        <right_flank>TTTGTAGTACTCGTCAAGTTCTATCATATCTAATTTAGTTGGTCCAAAAA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATGATACTATTTGGAAAATTGTATCATGTCCATGAACAAAGTTTCCTCGGATCAGCCACTTTATGGTTTCACAGGTTAAGCTGGGTTGCCCAAAGGCGAACGAACGGCGGTTGAAAGTTTCAAAATTCGCTATAACTTCGGTTTTTCAGTGAATGGGCGAAATTTTTTGTCAAAAACTTTTTAATCAGTAATCGGAAGTTTATAAAAAAATATATGTTTTTCGGTGAAATGATCTTGGAAAACTGAAAAAAAGTAGTAAAAAACCAATTTTTCTTATATTTTTCCTGAAAAAGAAAATAGTTTTTTTTCACAATAATTTGATTACTATTTTTAGCTTTTCATAATTTTTGTCAAAAAATTTTTCCGTTAGCTCAAATGCTCAATTTATTACCGATTAGCAAACCTTCCGCTGCCATTTGTCCGCCATTGGGCCGTCCCGCTTCACCTGTCTTATAGCTTGGTCGGTAGACAAGATACAGTTTATCAAATAACATAAATTTGTAGTACTCGTCAAGTTCTATCATATCTAATTTAGTTGGTCCAAAAATATTAGTTCTAAAAGAAACTATGGCAGGGCCTGCGAAGGCCCACCAGGGCCCCGTTTACAAGAGGATGCCTAAAATAGCTGAAAATGTTTTTTAAAAGTTTTCGAACTTCAATTTCTGACAATAATTTTTCAGGTCATGTCCATGTATACACCTCAACAACTCGTAGCAGAATTCAAAGAAGTAGTCCATTTTGCAACATTTTTATGCAGTGTTCTAGTTAAAGAAGTCCGGCAAAGAGCAGCAAGCACAGGAACAATCGAAGCTGCTCAGAGCATTGCAGAGTTCCTTCGTCCAGGAACCGATCTCAAAGGATTCTCGATTTTGGATGCGATTCGATTCCTTTTATCTTCGTAAGTTCTGGGTCTTTGAAATTTTAATTTAAAAAATGATTCCAGAGACGATGAAGTGATGATTGATGCGGCATGTAAAGTTTCACTTCCATCCACACT</canonical>
            <polymorphic>AAAATGATACTATTTGGAAAATTGTATCATGTCCATGAACAAAGTTTCCTCGGATCAGCCACTTTATGGTTTCACAGGTTAAGCTGGGTTGCCCAAAGGCGAACGAACGGCGGTTGAAAGTTTCAAAATTCGCTATAACTTCGGTTTTTCAGTGAATGGGCGAAATTTTTTGTCAAAAACTTTTTAATCAGTAATCGGAAGTTTATAAAAAAATATATGTTTTTCGGTGAAATGATCTTGGAAAACTGAAAAAAAGTAGTAAAAAACCAATTTTTCTTATATTTTTCCTGAAAAAGAAAATAGTTTTTTTTCACAATAATTTGATTACTATTTTTAGCTTTTCATAATTTTTGTCAAAAAATTTTTCCGTTAGCTCAAATGCTCAATTTATTACCGATTAGCAAACCTTCCGCTGCCATTTGTCCGCCATTGGGCCGTCCCGCTTCACCTGTCTTATAGCTTGGTCGGTAGACAAGATACAGTTTATCAAATAACATAAWTTTGTAGTACTCGTCAAGTTCTATCATATCTAATTTAGTTGGTCCAAAAATATTAGTTCTAAAAGAAACTATGGCAGGGCCTGCGAAGGCCCACCAGGGCCCCGTTTACAAGAGGATGCCTAAAATAGCTGAAAATGTTTTTTAAAAGTTTTCGAACTTCAATTTCTGACAATAATTTTTCAGGTCATGTCCATGTATACACCTCAACAACTCGTAGCAGAATTCAAAGAAGTAGTCCATTTTGCAACATTTTTATGCAGTGTTCTAGTTAAAGAAGTCCGGCAAAGAGCAGCAAGCACAGGAACAATCGAAGCTGCTCAGAGCATTGCAGAGTTCCTTCGTCCAGGAACCGATCTCAAAGGATTCTCGATTTTGGATGCGATTCGATTCCTTTTATCTTCGTAAGTTCTGGGTCTTTGAAATTTTAATTTAAAAAATGATTCCAGAGACGATGAAGTGATGATTGATGCGGCATGTAAAGTTTCACTTCCATCCACACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>222 200 196 139 126 80 37</canonical_bands>
                <polymorphic_bands>361 200 196 126 80 37</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>200 129 114 107 105 74 49 47 37 33 28 25 19 14 13 6</canonical_bands>
                <polymorphic_bands>200 147 129 107 105 74 49 47 37 28 25 19 14 13 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGATCTTGGAAAACTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTAGGCATCCTCTTGTAAAC</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>ATGATCTTGGAAAACTGAAAAAAAGTAGTAAAAAACCAATTTTTCTTATATTTTTCCTGAAAAAGAAAATAGTTTTTTTTCACAATAATTTGATTACTATTTTTAGCTTTTCATAATTTTTGTCAAAAAATTTTTCCGTTAGCTCAAATGCTCAATTTATTACCGATTAGCAAACCTTCCGCTGCCATTTGTCCGCCATTGGGCCGTCCCGCTTCACCTGTCTTATAGCTTGGTCGGTAGACAAGATACAGTTTATCAAATAACATAAATTTGTAGTACTCGTCAAGTTCTATCATATCTAATTTAGTTGGTCCAAAAATATTAGTTCTAAAAGAAACTATGGCAGGGCCTGCGAAGGCCCACCAGGGCCCCGTTTACAAGAGGATGCCTAAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATGATCTTGGAAAACTGAAAAAAAGTAGTAAAAAACCAATTTTTCTTATATTTTTCCTGAAAAAGAAAATAGTTTTTTTTCACAATAATTTGATTACTATTTTTAGCTTTTCATAATTTTTGTCAAAAAATTTTTCCGTTAGCTCAAATGCTCAATTTATTACCGATTAGCAAACCTTCCGCTGCCATTTGTCCGCCATTGGGCCGTCCCGCTTCACCTGTCTTATAGCTTGGTCGGTAGACAAGATACAGTTTATCAAATAACATAAWTTTGTAGTACTCGTCAAGTTCTATCATATCTAATTTAGTTGGTCCAAAAATATTAGTTCTAAAAGAAACTATGGCAGGGCCTGCGAAGGCCCACCAGGGCCCCGTTTACAAGAGGATGCCTAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30409</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>705134</contig_pos>
        <strand></strand>
        <context>Tattttggta[C/T]gaaaaaatcg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGTGATTCAATTAAAAAAAAGATTAACTGATTAGATATTATTTTGGTA</left_flank>
        <right_flank>GAAAAAATCGGAGCTGTGGTAGAAAATTTGGTGGCCGTGGCCGAAGCTGC</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCAGAATTCAAAGAAGTAGTCCATTTTGCAACATTTTTATGCAGTGTTCTAGTTAAAGAAGTCCGGCAAAGAGCAGCAAGCACAGGAACAATCGAAGCTGCTCAGAGCATTGCAGAGTTCCTTCGTCCAGGAACCGATCTCAAAGGATTCTCGATTTTGGATGCGATTCGATTCCTTTTATCTTCGTAAGTTCTGGGTCTTTGAAATTTTAATTTAAAAAATGATTCCAGAGACGATGAAGTGATGATTGATGCGGCATGTAAAGTTTCACTTCCATCCACACTTGTGAAGACAATTTACTTGTTTTTTGATTTACCAAATGTGGCTACTGTAACTCCAGAAAACTCTGAAAGTAGCTCAGAATCTGAAGATAGTATTAGGATCAATAATGAGAAGTTGTTCGATATGATTTCTCAAATCATGGAAGGACTCTGCAAGTTCAAGTGAGTTGGTGATTCAATTAAAAAAAAGATTAACTGATTAGATATTATTTTGGTACGAAAAAATCGGAGCTGTGGTAGAAAATTTGGTGGCCGTGGCCGAAGCTGCCACAATTAAAACTATCGTAATTCTGAAAAACCTTTATTTTCCGAACCTTCAGCAGGAAAATTAGTTCAGGGAATAAAAGTATTTTTAGGTCACGGTAATTGTCGTTGTGGGACCTTCGGCCACGGTCACCAGATTTTTCTTTTACAGCTCCCGAAAAAACATAATAAAACAGCTCTGAAAATTTCATCCTCTCCAATCAAAATGGCAATCGACCAAATCATTTTGAAGCATTTAAGGAACAAAAAAAACAGTTTCATCTAGAATTCGGATTAACCGAAAAAATAATTATCAGATGTGTCAGTGAAGAATTGGTTCGAAAAGATGATCTTCTGTTATTATTTGTTGGAACAACATCACAAGTGGCAGATGCAAACAACTGTTGGAGAAAACTTTGTTCAAGGCTTTTGGAAGTTATAGCTGATAAGGTAATAAATAAGGTAATTATAAAAA</canonical>
            <polymorphic>AGCAGAATTCAAAGAAGTAGTCCATTTTGCAACATTTTTATGCAGTGTTCTAGTTAAAGAAGTCCGGCAAAGAGCAGCAAGCACAGGAACAATCGAAGCTGCTCAGAGCATTGCAGAGTTCCTTCGTCCAGGAACCGATCTCAAAGGATTCTCGATTTTGGATGCGATTCGATTCCTTTTATCTTCGTAAGTTCTGGGTCTTTGAAATTTTAATTTAAAAAATGATTCCAGAGACGATGAAGTGATGATTGATGCGGCATGTAAAGTTTCACTTCCATCCACACTTGTGAAGACAATTTACTTGTTTTTTGATTTACCAAATGTGGCTACTGTAACTCCAGAAAACTCTGAAAGTAGCTCAGAATCTGAAGATAGTATTAGGATCAATAATGAGAAGTTGTTCGATATGATTTCTCAAATCATGGAAGGACTCTGCAAGTTCAAGTGAGTTGGTGATTCAATTAAAAAAAAGATTAACTGATTAGATATTATTTTGGTAYGAAAAAATCGGAGCTGTGGTAGAAAATTTGGTGGCCGTGGCCGAAGCTGCCACAATTAAAACTATCGTAATTCTGAAAAACCTTTATTTTCCGAACCTTCAGCAGGAAAATTAGTTCAGGGAATAAAAGTATTTTTAGGTCACGGTAATTGTCGTTGTGGGACCTTCGGCCACGGTCACCAGATTTTTCTTTTACAGCTCCCGAAAAAACATAATAAAACAGCTCTGAAAATTTCATCCTCTCCAATCAAAATGGCAATCGACCAAATCATTTTGAAGCATTTAAGGAACAAAAAAAACAGTTTCATCTAGAATTCGGATTAACCGAAAAAATAATTATCAGATGTGTCAGTGAAGAATTGGTTCGAAAAGATGATCTTCTGTTATTATTTGTTGGAACAACATCACAAGTGGCAGATGCAAACAACTGTTGGAGAAAACTTTGTTCAAGGCTTTTGGAAGTTATAGCTGATAAGGTAATAAATAAGGTAATTATAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTCAAGTGAGTTGGTGATTC</pcr_primer_p1>
		<pcr_primer_p2>TCAGAGCTGTTTTATTATGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>AGTTCAAGTGAGTTGGTGATTCAATTAAAAAAAAGATTAACTGATTAGATATTATTTTGGTACGAAAAAATCGGAGCTGTGGTAGAAAATTTGGTGGCCGTGGCCGAAGCTGCCACAATTAAAACTATCGTAATTCTGAAAAACCTTTATTTTCCGAACCTTCAGCAGGAAAATTAGTTCAGGGAATAAAAGTATTTTTAGGTCACGGTAATTGTCGTTGTGGGACCTTCGGCCACGGTCACCAGATTTTTCTTTTACAGCTCCCGAAAAAACATAATAAAACAGCTCTGA</canonical_amplicon>
		<polymorphic_amplicon>AGTTCAAGTGAGTTGGTGATTCAATTAAAAAAAAGATTAACTGATTAGATATTATTTTGGTAYGAAAAAATCGGAGCTGTGGTAGAAAATTTGGTGGCCGTGGCCGAAGCTGCCACAATTAAAACTATCGTAATTCTGAAAAACCTTTATTTTCCGAACCTTCAGCAGGAAAATTAGTTCAGGGAATAAAAGTATTTTTAGGTCACGGTAATTGTCGTTGTGGGACCTTCGGCCACGGTCACCAGATTTTTCTTTTACAGCTCCCGAAAAAACATAATAAAACAGCTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30410</snp_id>
        <super_contig>c005301221.Contig1</super_contig>
        <contig_pos>707032</contig_pos>
        <strand></strand>
        <context>ttatctagat[T/G]cctgtgaaag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TGTGATGGACGGGTCCAAACACCGTCAAGTTTGAGCTCAATTATCTAGAT</left_flank>
        <right_flank>CCTGTGAAAGATATCAAAATTTTGTCAACTGATGACATATTGGTGATTGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTTTCAGTCTTTGCGTACTTCTTAAAACCGAAATTTCGGCTGGAAAAACTGCAATGTGCACAATTATTGTACAGATGTGTTTCAAGTTGATTACGGTAGATGCAATTATAAAAGTAAGAGTTTTACGATTTCAAGTGTTTTCTATTTTTGGAATTTTGAAGGATGCATTTCGAGAAGTTGGACTGCTGGATGCCCTGTGTTATATCATTCGTCGGATGTATGAAATGTATGAAAAAAGTGGGCAAGCTTCATCATTCACTGCCACATCGACCAACTCTCGAACTCAGGATCAACTGAAATTGTCACTTTTGACTACGGACCTTTTGACTATCATCATCAAGAACAATACGGAAAATGGGAAATTGTTCACAGAATGCTTCGGTGCAAAACTTTTGGTGGAGATTGTCTGTGGTGAGTTTTGGCAGGAAATGCATACCTTCAACCCTGTGATGGACGGGTCCAAACACCGTCAAGTTTGAGCTCAATTATCTAGATTCCTGTGAAAGATATCAAAATTTTGTCAACTGATGACATATTGGTGATTGTACGAGGAAAATTAGCCAGGTGACAATTTTTGATACCTTTACCAAGAATCGAGATGATTGAGCTCAAAGTTGACAATTTGGGTTTTCTATTAAAGGTAATTCCTCCAAACGTTCTATTTCAGAAGTCAACGAGGAATGGAGAAGTTCTTTATTGCAATTAGTCAAACAACTACTGATCGTAGCTCCTTCTGACCAATATATTGTACATTTGGTTAATGTGAGTTCTGAATTTATTTTAACAGTGCAATTTAAGTAATTAATTTACATTTTAGACTCTTCAAGATCGGATCCCAATAGAAAACTTGGAAGTGATGTTTAGTCTTCTCAAGGTATGGTTCAACTAATTTTTCTATTTTTATCCTCAACATTCAGGCACTGCTTGGTGTTGTTCGTGAGTCTCACAAAGTTCGAATACAATTCCGAAAGTCTGGAGGATTCTTGGCTCTCTCTG</canonical>
            <polymorphic>ATTTTTTTCAGTCTTTGCGTACTTCTTAAAACCGAAATTTCGGCTGGAAAAACTGCAATGTGCACAATTATTGTACAGATGTGTTTCAAGTTGATTACGGTAGATGCAATTATAAAAGTAAGAGTTTTACGATTTCAAGTGTTTTCTATTTTTGGAATTTTGAAGGATGCATTTCGAGAAGTTGGACTGCTGGATGCCCTGTGTTATATCATTCGTCGGATGTATGAAATGTATGAAAAAAGTGGGCAAGCTTCATCATTCACTGCCACATCGACCAACTCTCGAACTCAGGATCAACTGAAATTGTCACTTTTGACTACGGACCTTTTGACTATCATCATCAAGAACAATACGGAAAATGGGAAATTGTTCACAGAATGCTTCGGTGCAAAACTTTTGGTGGAGATTGTCTGTGGTGAGTTTTGGCAGGAAATGCATACCTTCAACCCTGTGATGGACGGGTCCAAACACCGTCAAGTTTGAGCTCAATTATCTAGATKCCTGTGAAAGATATCAAAATTTTGTCAACTGATGACATATTGGTGATTGTACGAGGAAAATTAGCCAGGTGACAATTTTTGATACCTTTACCAAGAATCGAGATGATTGAGCTCAAAGTTGACAATTTGGGTTTTCTATTAAAGGTAATTCCTCCAAACGTTCTATTTCAGAAGTCAACGAGGAATGGAGAAGTTCTTTATTGCAATTAGTCAAACAACTACTGATCGTAGCTCCTTCTGACCAATATATTGTACATTTGGTTAATGTGAGTTCTGAATTTATTTTAACAGTGCAATTTAAGTAATTAATTTACATTTTAGACTCTTCAAGATCGGATCCCAATAGAAAACTTGGAAGTGATGTTTAGTCTTCTCAAGGTATGGTTCAACTAATTTTTCTATTTTTATCCTCAACATTCAGGCACTGCTTGGTGTTGTTCGTGAGTCTCACAAAGTTCGAATACAATTCCGAAAGTCTGGAGGATTCTTGGCTCTCTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>497 226 122 98 40 17</canonical_bands>
                <polymorphic_bands>595 226 122 40 17</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>497 388 98 17</canonical_bands>
                <polymorphic_bands>595 388 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTGTCTGTGGTGAGTTTTG</pcr_primer_p1>
		<pcr_primer_p2>GAAATAGAACGTTTGGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>GATTGTCTGTGGTGAGTTTTGGCAGGAAATGCATACCTTCAACCCTGTGATGGACGGGTCCAAACACCGTCAAGTTTGAGCTCAATTATCTAGATTCCTGTGAAAGATATCAAAATTTTGTCAACTGATGACATATTGGTGATTGTACGAGGAAAATTAGCCAGGTGACAATTTTTGATACCTTTACCAAGAATCGAGATGATTGAGCTCAAAGTTGACAATTTGGGTTTTCTATTAAAGGTAATTCCTCCAAACGTTCTATTTC</canonical_amplicon>
		<polymorphic_amplicon>GATTGTCTGTGGTGAGTTTTGGCAGGAAATGCATACCTTCAACCCTGTGATGGACGGGTCCAAACACCGTCAAGTTTGAGCTCAATTATCTAGATKCCTGTGAAAGATATCAAAATTTTGTCAACTGATGACATATTGGTGATTGTACGAGGAAAATTAGCCAGGTGACAATTTTTGATACCTTTACCAAGAATCGAGATGATTGAGCTCAAAGTTGACAATTTGGGTTTTCTATTAAAGGTAATTCCTCCAAACGTTCTATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30411</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>36086</contig_pos>
        <strand></strand>
        <context>ataatatgat[A/G]artaatttat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAGATATCGAAAATTTGCCAATTGATAAAATATTGCTGATAATATGAT</left_flank>
        <right_flank>AATAATTTATCATTTGACACCTTTTTGATATCTGTTACAGGAAATGGGAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTAAATTTGGTGTATTTTGGTCTAAAAACGACTGATTTTTGGATTGAAAAATGATCGAGTTTGGTCAGAATTTCGGAAGAATCAGGAGACGAAAATTGGGAGGAAAAGCATAAAAGTTGCTCAAAATCTCTAACATTAGGACTTCAACTGATCGCAACCTAACCTAATTAGAATCATAATGAATGCGAAATTACCGTAATAGAAGCCCACATAGGGATTAGTGAACTTTGAGCTCAATTATCTCGGTTCCTATGAGAGATATCAAAACTAATAAAATGTTTATCATAACATCACAAACATTTTATCAGTTGACAATATTTTGAAATCTCTTCCAGGGACGGATATAATGAGGTACAAAGTGATAAGCCCCTCTCCCTCCCCCTTTTTCTATGGTGGTGGTGTTTTGTTAGACTGTCACACTTTGAGCTCAATTATCTCGACTCCTATAAAAGATATCGAAAATTTGCCAATTGATAAAATATTGCTGATAATATGATAAATAATTTATCATTTGACACCTTTTTGATATCTGTTACAGGAAATGGGATAAATGAGCTCAAAGAGCACTGGGATTCTATTAAAGAATTTACGGCGACTAAATTAATCTAGCCTAAAAAACGGCTACATTTAGCTTGAAACTCACCAATTTTTAGTCCATAACAATTTTTTAAAAACTCACAATCAAGTCCGCAACTGCCAAGGAGAAGATCAGATAATACTGTGGTCGTCCTCTCAAATCCCTTTCCATGATGATCGCCAAAATCACAAATAGGTTACCAATGAAACAGGAGAGTATGAGCAATAGCAGCACTGACGCAAGGATCACAGTCTGAAAATTAAAAGTGTTATAACTCAATCAGTTCTTGTTCAAATCGGATAAAATCTAAATCTTCAAGTTTAGCATGAGAAGCGCTTTAAATGATTATAGTCTTAATTCGGTTTCGGAAATTTTGAAGTACCATCAAACCTGCCTCGAGTTTGAGCACAATTATCTCGGC</canonical>
            <polymorphic>CACTAAATTTGGTGTATTTTGGTCTAAAAACGACTGATTTTTGGATTGAAAAATGATCGAGTTTGGTCAGAATTTCGGAAGAATCAGGAGACGAAAATTGGGAGGAAAAGCATAAAAGTTGCTCAAAATCTCTAACATTAGGACTTCAACTGATCGCAACCTAACCTAATTAGAATCATAATGAATGCGAAATTACCGTAATAGAAGCCCACATAGGGATTAGTGAACTTTGAGCTCAATTATCTCGGTTCCTATGAGAGATATCAAAACTAATAAAATGTTTATCATAACATCACAAACATTTTATCAGTTGACAATATTTTGAAATCTCTTCCAGGGACGGATATAATGAGGTACAAAGTGATAAGCCCCTCTCCCTCCCCCTTTTTCTATGGTGGTGGTGTTTTGTTAGACTGTCACACTTTGAGCTCAATTATCTCGACTCCTATAAAAGATATCGAAAATTTGCCAATTGATAAAATATTGCTGATAATATGATRAATAATTTATCATTTGACACCTTTTTGATATCTGTTACAGGAAATGGGATAAATGAGCTCAAAGAGCACTGGGATTCTATTAAAGAATTTACGGCGACTAAATTAATCTAGCCTAAAAAACGGCTACATTTAGCTTGAAACTCACCAATTTTTAGTCCATAACAATTTTTTAAAAACTCACAATCAAGTCCGCAACTGCCAAGGAGAAGATCAGATAATACTGTGGTCGTCCTCTCAAATCCCTTTCCATGATGATCGCCAAAATCACAAATAGGTTACCAATGAAACAGGAGAGTATGAGCAATAGCAGCACTGACGCAAGGATCACAGTCTGAAAATTAAAAGTGTTATAACTCAATCAGTTCTTGTTCAAATCGGATAAAATCTAAATCTTCAAGTTTAGCATGAGAAGCGCTTTAAATGATTATAGTCTTAATTCGGTTTCGGAAATTTTGAAGTACCATCAAACCTGCCTCGAGTTTGAGCACAATTATCTCGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTATGGTGGTGGTGTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGCTAAATGTAGCCGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCTATGGTGGTGGTGTTTTGTTAGACTGTCACACTTTGAGCTCAATTATCTCGACTCCTATAAAAGATATCGAAAATTTGCCAATTGATAAAATATTGCTGATAATATGATAAATAATTTATCATTTGACACCTTTTTGATATCTGTTACAGGAAATGGGATAAATGAGCTCAAAGAGCACTGGGATTCTATTAAAGAATTTACGGCGACTAAATTAATCTAGCCTAAAAAACGGCTACATTTAGCTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTATGGTGGTGGTGTTTTGTTAGACTGTCACACTTTGAGCTCAATTATCTCGACTCCTATAAAAGATATCGAAAATTTGCCAATTGATAAAATATTGCTGATAATATGATRAATAATTTATCATTTGACACCTTTTTGATATCTGTTACAGGAAATGGGATAAATGAGCTCAAAGAGCACTGGGATTCTATTAAAGAATTTACGGCGACTAAATTAATCTAGCCTAAAAAACGGCTACATTTAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30412</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>36088</contig_pos>
        <strand></strand>
        <context>aatatgatra[A/G]taatttatca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGATATCGAAAATTTGCCAATTGATAAAATATTGCTGATAATATGATAA</left_flank>
        <right_flank>TAATTTATCATTTGACACCTTTTTGATATCTGTTACAGGAAATGGGATAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAAATTTGGTGTATTTTGGTCTAAAAACGACTGATTTTTGGATTGAAAAATGATCGAGTTTGGTCAGAATTTCGGAAGAATCAGGAGACGAAAATTGGGAGGAAAAGCATAAAAGTTGCTCAAAATCTCTAACATTAGGACTTCAACTGATCGCAACCTAACCTAATTAGAATCATAATGAATGCGAAATTACCGTAATAGAAGCCCACATAGGGATTAGTGAACTTTGAGCTCAATTATCTCGGTTCCTATGAGAGATATCAAAACTAATAAAATGTTTATCATAACATCACAAACATTTTATCAGTTGACAATATTTTGAAATCTCTTCCAGGGACGGATATAATGAGGTACAAAGTGATAAGCCCCTCTCCCTCCCCCTTTTTCTATGGTGGTGGTGTTTTGTTAGACTGTCACACTTTGAGCTCAATTATCTCGACTCCTATAAAAGATATCGAAAATTTGCCAATTGATAAAATATTGCTGATAATATGATAAATAATTTATCATTTGACACCTTTTTGATATCTGTTACAGGAAATGGGATAAATGAGCTCAAAGAGCACTGGGATTCTATTAAAGAATTTACGGCGACTAAATTAATCTAGCCTAAAAAACGGCTACATTTAGCTTGAAACTCACCAATTTTTAGTCCATAACAATTTTTTAAAAACTCACAATCAAGTCCGCAACTGCCAAGGAGAAGATCAGATAATACTGTGGTCGTCCTCTCAAATCCCTTTCCATGATGATCGCCAAAATCACAAATAGGTTACCAATGAAACAGGAGAGTATGAGCAATAGCAGCACTGACGCAAGGATCACAGTCTGAAAATTAAAAGTGTTATAACTCAATCAGTTCTTGTTCAAATCGGATAAAATCTAAATCTTCAAGTTTAGCATGAGAAGCGCTTTAAATGATTATAGTCTTAATTCGGTTTCGGAAATTTTGAAGTACCATCAAACCTGCCTCGAGTTTGAGCACAATTATCTCGGCTC</canonical>
            <polymorphic>CTAAATTTGGTGTATTTTGGTCTAAAAACGACTGATTTTTGGATTGAAAAATGATCGAGTTTGGTCAGAATTTCGGAAGAATCAGGAGACGAAAATTGGGAGGAAAAGCATAAAAGTTGCTCAAAATCTCTAACATTAGGACTTCAACTGATCGCAACCTAACCTAATTAGAATCATAATGAATGCGAAATTACCGTAATAGAAGCCCACATAGGGATTAGTGAACTTTGAGCTCAATTATCTCGGTTCCTATGAGAGATATCAAAACTAATAAAATGTTTATCATAACATCACAAACATTTTATCAGTTGACAATATTTTGAAATCTCTTCCAGGGACGGATATAATGAGGTACAAAGTGATAAGCCCCTCTCCCTCCCCCTTTTTCTATGGTGGTGGTGTTTTGTTAGACTGTCACACTTTGAGCTCAATTATCTCGACTCCTATAAAAGATATCGAAAATTTGCCAATTGATAAAATATTGCTGATAATATGATAARTAATTTATCATTTGACACCTTTTTGATATCTGTTACAGGAAATGGGATAAATGAGCTCAAAGAGCACTGGGATTCTATTAAAGAATTTACGGCGACTAAATTAATCTAGCCTAAAAAACGGCTACATTTAGCTTGAAACTCACCAATTTTTAGTCCATAACAATTTTTTAAAAACTCACAATCAAGTCCGCAACTGCCAAGGAGAAGATCAGATAATACTGTGGTCGTCCTCTCAAATCCCTTTCCATGATGATCGCCAAAATCACAAATAGGTTACCAATGAAACAGGAGAGTATGAGCAATAGCAGCACTGACGCAAGGATCACAGTCTGAAAATTAAAAGTGTTATAACTCAATCAGTTCTTGTTCAAATCGGATAAAATCTAAATCTTCAAGTTTAGCATGAGAAGCGCTTTAAATGATTATAGTCTTAATTCGGTTTCGGAAATTTTGAAGTACCATCAAACCTGCCTCGAGTTTGAGCACAATTATCTCGGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTATGGTGGTGGTGTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGCTAAATGTAGCCGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCTATGGTGGTGGTGTTTTGTTAGACTGTCACACTTTGAGCTCAATTATCTCGACTCCTATAAAAGATATCGAAAATTTGCCAATTGATAAAATATTGCTGATAATATGATAAATAATTTATCATTTGACACCTTTTTGATATCTGTTACAGGAAATGGGATAAATGAGCTCAAAGAGCACTGGGATTCTATTAAAGAATTTACGGCGACTAAATTAATCTAGCCTAAAAAACGGCTACATTTAGCTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTATGGTGGTGGTGTTTTGTTAGACTGTCACACTTTGAGCTCAATTATCTCGACTCCTATAAAAGATATCGAAAATTTGCCAATTGATAAAATATTGCTGATAATATGATAARTAATTTATCATTTGACACCTTTTTGATATCTGTTACAGGAAATGGGATAAATGAGCTCAAAGAGCACTGGGATTCTATTAAAGAATTTACGGCGACTAAATTAATCTAGCCTAAAAAACGGCTACATTTAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30413</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>36573</contig_pos>
        <strand></strand>
        <context>gagtttgagc[A/T]saattatctc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCGGTTTCGGAAATTTTGAAGTACCATCAAACCTGCCTCGAGTTTGAGC</left_flank>
        <right_flank>CAATTATCTCGGCTCCTTTGAGAGCTTTTATAAATTTGTCAACTAATAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATAATATGATAAATAATTTATCATTTGACACCTTTTTGATATCTGTTACAGGAAATGGGATAAATGAGCTCAAAGAGCACTGGGATTCTATTAAAGAATTTACGGCGACTAAATTAATCTAGCCTAAAAAACGGCTACATTTAGCTTGAAACTCACCAATTTTTAGTCCATAACAATTTTTTAAAAACTCACAATCAAGTCCGCAACTGCCAAGGAGAAGATCAGATAATACTGTGGTCGTCCTCTCAAATCCCTTTCCATGATGATCGCCAAAATCACAAATAGGTTACCAATGAAACAGGAGAGTATGAGCAATAGCAGCACTGACGCAAGGATCACAGTCTGAAAATTAAAAGTGTTATAACTCAATCAGTTCTTGTTCAAATCGGATAAAATCTAAATCTTCAAGTTTAGCATGAGAAGCGCTTTAAATGATTATAGTCTTAATTCGGTTTCGGAAATTTTGAAGTACCATCAAACCTGCCTCGAGTTTGAGCACAATTATCTCGGCTCCTTTGAGAGCTTTTATAAATTTGTCAACTAATAAAATATTGCTGATAATGTGATTAACAATTTATTCTCGGGGTTCATTTAATTGAGTACAATTAAGACCACCAAGGTGATCGCTGAGAATTTAGAATCCAAAATTTAGAAATCCAGTTCGGACCTTTTTAAAGGTTCCTGAAGTCTTAAAAAGATCCCAATTTTGAATCCTGGATCCTTGGATCCCTTACCTGCACCAACGGTCTCTCGACATCACTAAAAATCTCGGCATGTGCTGGAAACTGATCTACCAGATGTGTTCCCCTGGCGGCCGCCGACAGAATCGTCTGCGGTGTGATCGCCGCCGTCGAAGACGACGTCGTGAAATTCCAAAACTGCTCGTCGATCATCATCTTCATCACGATTCATCGTCTCATCACGACGACGACGACGACGTCTTCTGCAAACGACGTGGGATGAGAATAACGGTGGGAGATGAAGCAGCAATTGGTAAA</canonical>
            <polymorphic>TGATAATATGATAAATAATTTATCATTTGACACCTTTTTGATATCTGTTACAGGAAATGGGATAAATGAGCTCAAAGAGCACTGGGATTCTATTAAAGAATTTACGGCGACTAAATTAATCTAGCCTAAAAAACGGCTACATTTAGCTTGAAACTCACCAATTTTTAGTCCATAACAATTTTTTAAAAACTCACAATCAAGTCCGCAACTGCCAAGGAGAAGATCAGATAATACTGTGGTCGTCCTCTCAAATCCCTTTCCATGATGATCGCCAAAATCACAAATAGGTTACCAATGAAACAGGAGAGTATGAGCAATAGCAGCACTGACGCAAGGATCACAGTCTGAAAATTAAAAGTGTTATAACTCAATCAGTTCTTGTTCAAATCGGATAAAATCTAAATCTTCAAGTTTAGCATGAGAAGCGCTTTAAATGATTATAGTCTTAATTCGGTTTCGGAAATTTTGAAGTACCATCAAACCTGCCTCGAGTTTGAGCWCAATTATCTCGGCTCCTTTGAGAGCTTTTATAAATTTGTCAACTAATAAAATATTGCTGATAATGTGATTAACAATTTATTCTCGGGGTTCATTTAATTGAGTACAATTAAGACCACCAAGGTGATCGCTGAGAATTTAGAATCCAAAATTTAGAAATCCAGTTCGGACCTTTTTAAAGGTTCCTGAAGTCTTAAAAAGATCCCAATTTTGAATCCTGGATCCTTGGATCCCTTACCTGCACCAACGGTCTCTCGACATCACTAAAAATCTCGGCATGTGCTGGAAACTGATCTACCAGATGTGTTCCCCTGGCGGCCGCCGACAGAATCGTCTGCGGTGTGATCGCCGCCGTCGAAGACGACGTCGTGAAATTCCAAAACTGCTCGTCGATCATCATCTTCATCACGATTCATCGTCTCATCACGACGACGACGACGACGTCTTCTGCAAACGACGTGGGATGAGAATAACGGTGGGAGATGAAGCAGCAATTGGTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 419 72 9</canonical_bands>
                <polymorphic_bands>919 72 9</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>500 419 72 9</canonical_bands>
                <polymorphic_bands>919 72 9</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>140 117 76 67 49 49 45 45 42 37 36 36 35 32 27 24 24 20 20 19 18 17 15 8 2</canonical_bands>
                <polymorphic_bands>207 117 76 49 49 45 45 42 37 36 36 35 32 27 24 24 20 20 19 18 17 15 8 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTCTTGTTCAAATCGGATAA</pcr_primer_p1>
		<pcr_primer_p2>ACCTTGGTGGTCTTAATTGTACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTTCTTGTTCAAATCGGATAAAATCTAAATCTTCAAGTTTAGCATGAGAAGCGCTTTAAATGATTATAGTCTTAATTCGGTTTCGGAAATTTTGAAGTACCATCAAACCTGCCTCGAGTTTGAGCACAATTATCTCGGCTCCTTTGAGAGCTTTTATAAATTTGTCAACTAATAAAATATTGCTGATAATGTGATTAACAATTTATTCTCGGGGTTCATTTAATTGAGTACAATTAAGACCACCAAGGT</canonical_amplicon>
		<polymorphic_amplicon>AGTTCTTGTTCAAATCGGATAAAATCTAAATCTTCAAGTTTAGCATGAGAAGCGCTTTAAATGATTATAGTCTTAATTCGGTTTCGGAAATTTTGAAGTACCATCAAACCTGCCTCGAGTTTGAGCWCAATTATCTCGGCTCCTTTGAGAGCTTTTATAAATTTGTCAACTAATAAAATATTGCTGATAATGTGATTAACAATTTATTCTCGGGGTTCATTTAATTGAGTACAATTAAGACCACCAAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30414</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>36574</contig_pos>
        <strand></strand>
        <context>agtttgagcw[C/G]aattatctcg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCGGTTTCGGAAATTTTGAAGTACCATCAAACCTGCCTCGAGTTTGAGCA</left_flank>
        <right_flank>AATTATCTCGGCTCCTTTGAGAGCTTTTATAAATTTGTCAACTAATAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATAATATGATAAATAATTTATCATTTGACACCTTTTTGATATCTGTTACAGGAAATGGGATAAATGAGCTCAAAGAGCACTGGGATTCTATTAAAGAATTTACGGCGACTAAATTAATCTAGCCTAAAAAACGGCTACATTTAGCTTGAAACTCACCAATTTTTAGTCCATAACAATTTTTTAAAAACTCACAATCAAGTCCGCAACTGCCAAGGAGAAGATCAGATAATACTGTGGTCGTCCTCTCAAATCCCTTTCCATGATGATCGCCAAAATCACAAATAGGTTACCAATGAAACAGGAGAGTATGAGCAATAGCAGCACTGACGCAAGGATCACAGTCTGAAAATTAAAAGTGTTATAACTCAATCAGTTCTTGTTCAAATCGGATAAAATCTAAATCTTCAAGTTTAGCATGAGAAGCGCTTTAAATGATTATAGTCTTAATTCGGTTTCGGAAATTTTGAAGTACCATCAAACCTGCCTCGAGTTTGAGCACAATTATCTCGGCTCCTTTGAGAGCTTTTATAAATTTGTCAACTAATAAAATATTGCTGATAATGTGATTAACAATTTATTCTCGGGGTTCATTTAATTGAGTACAATTAAGACCACCAAGGTGATCGCTGAGAATTTAGAATCCAAAATTTAGAAATCCAGTTCGGACCTTTTTAAAGGTTCCTGAAGTCTTAAAAAGATCCCAATTTTGAATCCTGGATCCTTGGATCCCTTACCTGCACCAACGGTCTCTCGACATCACTAAAAATCTCGGCATGTGCTGGAAACTGATCTACCAGATGTGTTCCCCTGGCGGCCGCCGACAGAATCGTCTGCGGTGTGATCGCCGCCGTCGAAGACGACGTCGTGAAATTCCAAAACTGCTCGTCGATCATCATCTTCATCACGATTCATCGTCTCATCACGACGACGACGACGACGTCTTCTGCAAACGACGTGGGATGAGAATAACGGTGGGAGATGAAGCAGCAATTGGTAAAG</canonical>
            <polymorphic>GATAATATGATAAATAATTTATCATTTGACACCTTTTTGATATCTGTTACAGGAAATGGGATAAATGAGCTCAAAGAGCACTGGGATTCTATTAAAGAATTTACGGCGACTAAATTAATCTAGCCTAAAAAACGGCTACATTTAGCTTGAAACTCACCAATTTTTAGTCCATAACAATTTTTTAAAAACTCACAATCAAGTCCGCAACTGCCAAGGAGAAGATCAGATAATACTGTGGTCGTCCTCTCAAATCCCTTTCCATGATGATCGCCAAAATCACAAATAGGTTACCAATGAAACAGGAGAGTATGAGCAATAGCAGCACTGACGCAAGGATCACAGTCTGAAAATTAAAAGTGTTATAACTCAATCAGTTCTTGTTCAAATCGGATAAAATCTAAATCTTCAAGTTTAGCATGAGAAGCGCTTTAAATGATTATAGTCTTAATTCGGTTTCGGAAATTTTGAAGTACCATCAAACCTGCCTCGAGTTTGAGCASAATTATCTCGGCTCCTTTGAGAGCTTTTATAAATTTGTCAACTAATAAAATATTGCTGATAATGTGATTAACAATTTATTCTCGGGGTTCATTTAATTGAGTACAATTAAGACCACCAAGGTGATCGCTGAGAATTTAGAATCCAAAATTTAGAAATCCAGTTCGGACCTTTTTAAAGGTTCCTGAAGTCTTAAAAAGATCCCAATTTTGAATCCTGGATCCTTGGATCCCTTACCTGCACCAACGGTCTCTCGACATCACTAAAAATCTCGGCATGTGCTGGAAACTGATCTACCAGATGTGTTCCCCTGGCGGCCGCCGACAGAATCGTCTGCGGTGTGATCGCCGCCGTCGAAGACGACGTCGTGAAATTCCAAAACTGCTCGTCGATCATCATCTTCATCACGATTCATCGTCTCATCACGACGACGACGACGACGTCTTCTGCAAACGACGTGGGATGAGAATAACGGTGGGAGATGAAGCAGCAATTGGTAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 419 71 9</canonical_bands>
                <polymorphic_bands>920 71 9</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 419 71 9</canonical_bands>
                <polymorphic_bands>920 71 9</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>140 117 76 67 49 49 45 45 42 37 36 36 35 31 27 25 24 20 20 19 18 17 15 8 2</canonical_bands>
                <polymorphic_bands>207 117 76 49 49 45 45 42 37 36 36 35 31 27 25 24 20 20 19 18 17 15 8 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTCTTGTTCAAATCGGATAA</pcr_primer_p1>
		<pcr_primer_p2>ACCTTGGTGGTCTTAATTGTACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTTCTTGTTCAAATCGGATAAAATCTAAATCTTCAAGTTTAGCATGAGAAGCGCTTTAAATGATTATAGTCTTAATTCGGTTTCGGAAATTTTGAAGTACCATCAAACCTGCCTCGAGTTTGAGCACAATTATCTCGGCTCCTTTGAGAGCTTTTATAAATTTGTCAACTAATAAAATATTGCTGATAATGTGATTAACAATTTATTCTCGGGGTTCATTTAATTGAGTACAATTAAGACCACCAAGGT</canonical_amplicon>
		<polymorphic_amplicon>AGTTCTTGTTCAAATCGGATAAAATCTAAATCTTCAAGTTTAGCATGAGAAGCGCTTTAAATGATTATAGTCTTAATTCGGTTTCGGAAATTTTGAAGTACCATCAAACCTGCCTCGAGTTTGAGCASAATTATCTCGGCTCCTTTGAGAGCTTTTATAAATTTGTCAACTAATAAAATATTGCTGATAATGTGATTAACAATTTATTCTCGGGGTTCATTTAATTGAGTACAATTAAGACCACCAAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30415</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>117779</contig_pos>
        <strand>+</strand>
        <context>cctaCGCATG[A/G]CTCAAGAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTCTCAGGAAAAATGAGTTTGAAAAAATCGTTGTGGTGCCTACGCATG</left_flank>
        <right_flank>CTCAAGAACAAAAAGCGCTAGACCGTTTTTGTTAACTATTGTCTATTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGGCGCATAGCTAGGCACCGCAACGCGAGGGGGCGGAGCCTAATTTTTTTTCTCTTGGGGGGTATCTGGCATGTTTGAAGGCGTAGAACTCGAGACTGGATGGACCGATTTTTATGAAATTTGGTCTCGTTATGTAAAAAAAACACGTAGAATCGACTGATGTAAAGCGTTTGCGTTGAAAATCAACGACTTTCAAAATACTCGTGAAAAACAGAAATCGACATGAGAAATTTGGTCTGAAAAGTGTAATAAAAGTCGATGTCGCTTCTTTTTATGATTGTTCTAAATACTGTTCTAAATACACAATACGCCCACTGCAACCCCCTCAGAGAAAATGGATGAAAAAGGGGGTTACAAAAAAGGGTGTATCTCGAGAACGGATGAACATTTTCGAAAAAAAATTCGGAATTATACTAATATTGATATGGTGAATACGATAATATAAACAATTCTCAGGAAAAATGAGTTTGAAAAAATCGTTGTGGTGCCTACGCATGGCTCAAGAACAAAAAGCGCTAGACCGTTTTTGTTAACTATTGTCTATTCAAAATAATCGCGCGGATGAACGAGTAAAAAACGTGTAGAGAGTATCAAAACCTGTAGAGGCGCTGTAGAGACGCAGACATTTTCACTCGTTCACTCGCGCGATTATTTTAAATACACAATAATGAAATGTTTGAAATCAAATTTAAAATAGTTTTGTAGTTAAAAACTTTTTCTAGCTACTGTAGTTTTAGAGTTATGCGCCTTTAGCTAAATTTGGCTGCTAGTCGTGGAATCCGAAGAACTCGGCCGCGAAGTTGAGTTTCTAGGACTAGGTTTGGAATTTTCTGGACCATGAAATTCAACAAATTTTCATAGTTTTTGAAACTTCTGGGTTAATTTCAAAAATTTATTCAATCTTTAAACTAGATTAAAACTTCCTAGTACTCGAAATTGTCATAGAAACAAAAATAAATTACAGCATTTTTTTCCAAACCCTATAACTTTGTCAGGGT</canonical>
            <polymorphic>AAAGGCGCATAGCTAGGCACCGCAACGCGAGGGGGCGGAGCCTAATTTTTTTTCTCTTGGGGGGTATCTGGCATGTTTGAAGGCGTAGAACTCGAGACTGGATGGACCGATTTTTATGAAATTTGGTCTCGTTATGTAAAAAAAACACGTAGAATCGACTGATGTAAAGCGTTTGCGTTGAAAATCAACGACTTTCAAAATACTCGTGAAAAACAGAAATCGACATGAGAAATTTGGTCTGAAAAGTGTAATAAAAGTCGATGTCGCTTCTTTTTATGATTGTTCTAAATACTGTTCTAAATACACAATACGCCCACTGCAACCCCCTCAGAGAAAATGGATGAAAAAGGGGGTTACAAAAAAGGGTGTATCTCGAGAACGGATGAACATTTTCGAAAAAAAATTCGGAATTATACTAATATTGATATGGTGAATACGATAATATAAACAATTCTCAGGAAAAATGAGTTTGAAAAAATCGTTGTGGTGCCTACGCATGRCTCAAGAACAAAAAGCGCTAGACCGTTTTTGTTAACTATTGTCTATTCAAAATAATCGCGCGGATGAACGAGTAAAAAACGTGTAGAGAGTATCAAAACCTGTAGAGGCGCTGTAGAGACGCAGACATTTTCACTCGTTCACTCGCGCGATTATTTTAAATACACAATAATGAAATGTTTGAAATCAAATTTAAAATAGTTTTGTAGTTAAAAACTTTTTCTAGCTACTGTAGTTTTAGAGTTATGCGCCTTTAGCTAAATTTGGCTGCTAGTCGTGGAATCCGAAGAACTCGGCCGCGAAGTTGAGTTTCTAGGACTAGGTTTGGAATTTTCTGGACCATGAAATTCAACAAATTTTCATAGTTTTTGAAACTTCTGGGTTAATTTCAAAAATTTATTCAATCTTTAAACTAGATTAAAACTTCCTAGTACTCGAAATTGTCATAGAAACAAAAATAAATTACAGCATTTTTTTCCAAACCCTATAACTTTGTCAGGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>460 224 206 31 29 28 12 10</canonical_bands>
                <polymorphic_bands>684 206 31 29 28 12 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGCTTCTTTTTATGATTGTTCTA</pcr_primer_p1>
		<pcr_primer_p2>ACCTAGTCCTAGAAACTCAACTTC</pcr_primer_p2>
		<pcr_amplicon_size>558</pcr_amplicon_size>
		<canonical_amplicon>CGCTTCTTTTTATGATTGTTCTAAATACTGTTCTAAATACACAATACGCCCACTGCAACCCCCTCAGAGAAAATGGATGAAAAAGGGGGTTACAAAAAAGGGTGTATCTCGAGAACGGATGAACATTTTCGAAAAAAAATTCGGAATTATACTAATATTGATATGGTGAATACGATAATATAAACAATTCTCAGGAAAAATGAGTTTGAAAAAATCGTTGTGGTGCCTACGCATGGCTCAAGAACAAAAAGCGCTAGACCGTTTTTGTTAACTATTGTCTATTCAAAATAATCGCGCGGATGAACGAGTAAAAAACGTGTAGAGAGTATCAAAACCTGTAGAGGCGCTGTAGAGACGCAGACATTTTCACTCGTTCACTCGCGCGATTATTTTAAATACACAATAATGAAATGTTTGAAATCAAATTTAAAATAGTTTTGTAGTTAAAAACTTTTTCTAGCTACTGTAGTTTTAGAGTTATGCGCCTTTAGCTAAATTTGGCTGCTAGTCGTGGAATCCGAAGAACTCGGCCGCGAAGTTGAGTTTCTAGGACTAGGT</canonical_amplicon>
		<polymorphic_amplicon>CGCTTCTTTTTATGATTGTTCTAAATACTGTTCTAAATACACAATACGCCCACTGCAACCCCCTCAGAGAAAATGGATGAAAAAGGGGGTTACAAAAAAGGGTGTATCTCGAGAACGGATGAACATTTTCGAAAAAAAATTCGGAATTATACTAATATTGATATGGTGAATACGATAATATAAACAATTCTCAGGAAAAATGAGTTTGAAAAAATCGTTGTGGTGCCTACGCATGRCTCAAGAACAAAAAGCGCTAGACCGTTTTTGTTAACTATTGTCTATTCAAAATAATCGCGCGGATGAACGAGTAAAAAACGTGTAGAGAGTATCAAAACCTGTAGAGGCGCTGTAGAGACGCAGACATTTTCACTCGTTCACTCGCGCGATTATTTTAAATACACAATAATGAAATGTTTGAAATCAAATTTAAAATAGTTTTGTAGTTAAAAACTTTTTCTAGCTACTGTAGTTTTAGAGTTATGCGCCTTTAGCTAAATTTGGCTGCTAGTCGTGGAATCCGAAGAACTCGGCCGCGAAGTTGAGTTTCTAGGACTAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30416</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>151575</contig_pos>
        <strand>+</strand>
        <context>TTTGAGCAAA[G/T]TTACATAGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAAGCAACCTGTGACATACTCAGGATCCCCAGTCATGATTTTTGAGCAAA</left_flank>
        <right_flank>TTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCAACCTAAATTTATTGTTCAAAATCTTACATCTCGATATCCCGGAGACAAAATGTCCAATGGGCTCATTCCATAGTTTTGGATTGGAATCGGATGGACCACTGGTTGAGTGTGGACTGGAATCGGTGCAATTGGAATTGGAGCTGGCTCGGATTTTCTGAACTTTCATTAACCAGTCCGAAATTGTTTAAAAGCCATACATTTTAAGCTAAAAATCATGTAAATCGGTTGATTTTGAGCAGAGTTACAAGGTTTTGAAAATTTGTGGGGGATGCTGGCCTAGAAATTCTGAACTGTTGGCCATCGGTAGCAGTTTTTTGAACCTAGTCGTGATTATACTTATTTCGAAGCTCTTGACTTGCTGAATTCAAGTATGTAAACTTCATGGACGAATTTTGGGTTTCTAGGCCATGCGGGTCTATTATATGGTCTTGGAATTCAGAAAACTAAGCAACCTGTGACATACTCAGGATCCCCAGTCATGATTTTTGAGCAAATTTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCATTTTGAAGGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCATGGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTTCTAGGCCACTAACCTCTTTCTCATTTTCTTCGGGGGCTTCTCTTCTACGTCAAGTGGAAAACTCTCAACAATCACATTCATTGATCTAATCCTTTTTCGCTTTTTCGGCTCAATCTTTCTGCATACTGTAGTTTTTATAGTTTGGGGTACTGTAGACGTTGTGGATGATGTTGGTGAGAGGAATGTTGAAGAAGACGTCGAGGAAGCTTCTAGAACCTTCGGTGGATCCTTTTTTCTGAGCAATGCCGCTAAAATCGGCCTCTCCACTTCTAGTTTCGATGGAGGTGGTGATTTTGGAGGCGTCATTTGAGTTGTCGTTGGGG</canonical>
            <polymorphic>TATCAACCTAAATTTATTGTTCAAAATCTTACATCTCGATATCCCGGAGACAAAATGTCCAATGGGCTCATTCCATAGTTTTGGATTGGAATCGGATGGACCACTGGTTGAGTGTGGACTGGAATCGGTGCAATTGGAATTGGAGCTGGCTCGGATTTTCTGAACTTTCATTAACCAGTCCGAAATTGTTTAAAAGCCATACATTTTAAGCTAAAAATCATGTAAATCGGTTGATTTTGAGCAGAGTTACAAGGTTTTGAAAATTTGTGGGGGATGCTGGCCTAGAAATTCTGAACTGTTGGCCATCGGTAGCAGTTTTTTGAACCTAGTCGTGATTATACTTATTTCGAAGCTCTTGACTTGCTGAATTCAAGTATGTAAACTTCATGGACGAATTTTGGGTTTCTAGGCCATGCGGGTCTATTATATGGTCTTGGAATTCAGAAAACTAAGCAACCTGTGACATACTCAGGATCCCCAGTCATGATTTTTGAGCAAAKTTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCATTTTGAAGGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCATGGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTTCTAGGCCACTAACCTCTTTCTCATTTTCTTCGGGGGCTTCTCTTCTACGTCAAGTGGAAAACTCTCAACAATCACATTCATTGATCTAATCCTTTTTCGCTTTTTCGGCTCAATCTTTCTGCATACTGTAGTTTTTATAGTTTGGGGTACTGTAGACGTTGTGGATGATGTTGGTGAGAGGAATGTTGAAGAAGACGTCGAGGAAGCTTCTAGAACCTTCGGTGGATCCTTTTTTCTGAGCAATGCCGCTAAAATCGGCCTCTCCACTTCTAGTTTCGATGGAGGTGGTGATTTTGGAGGCGTCATTTGAGTTGTCGTTGGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>355 251 107 80 60 44 41 27 25 10</canonical_bands>
                <polymorphic_bands>355 251 107 101 80 44 27 25 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>329 121 107 80 78 60 46 44 41 27 25 22 10 6 4</canonical_bands>
                <polymorphic_bands>329 121 107 101 80 78 46 44 27 25 22 10 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTCTTGGAATTCAGAAAACTA</pcr_primer_p1>
		<pcr_primer_p2>AAAATTAATTGGTGGCCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGTCTTGGAATTCAGAAAACTAAGCAACCTGTGACATACTCAGGATCCCCAGTCATGATTTTTGAGCAAATTTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCATTTTGAAGGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCATGGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTT</canonical_amplicon>
		<polymorphic_amplicon>GGTCTTGGAATTCAGAAAACTAAGCAACCTGTGACATACTCAGGATCCCCAGTCATGATTTTTGAGCAAAKTTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCATTTTGAAGGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCATGGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30417</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>151671</contig_pos>
        <strand></strand>
        <context>ggttatgctc[A/G]ttttgaaggt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTC</left_flank>
        <right_flank>TTTTGAAGGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCATGGCCAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGACCACTGGTTGAGTGTGGACTGGAATCGGTGCAATTGGAATTGGAGCTGGCTCGGATTTTCTGAACTTTCATTAACCAGTCCGAAATTGTTTAAAAGCCATACATTTTAAGCTAAAAATCATGTAAATCGGTTGATTTTGAGCAGAGTTACAAGGTTTTGAAAATTTGTGGGGGATGCTGGCCTAGAAATTCTGAACTGTTGGCCATCGGTAGCAGTTTTTTGAACCTAGTCGTGATTATACTTATTTCGAAGCTCTTGACTTGCTGAATTCAAGTATGTAAACTTCATGGACGAATTTTGGGTTTCTAGGCCATGCGGGTCTATTATATGGTCTTGGAATTCAGAAAACTAAGCAACCTGTGACATACTCAGGATCCCCAGTCATGATTTTTGAGCAAATTTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCATTTTGAAGGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCATGGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTTCTAGGCCACTAACCTCTTTCTCATTTTCTTCGGGGGCTTCTCTTCTACGTCAAGTGGAAAACTCTCAACAATCACATTCATTGATCTAATCCTTTTTCGCTTTTTCGGCTCAATCTTTCTGCATACTGTAGTTTTTATAGTTTGGGGTACTGTAGACGTTGTGGATGATGTTGGTGAGAGGAATGTTGAAGAAGACGTCGAGGAAGCTTCTAGAACCTTCGGTGGATCCTTTTTTCTGAGCAATGCCGCTAAAATCGGCCTCTCCACTTCTAGTTTCGATGGAGGTGGTGATTTTGGAGGCGTCATTTGAGTTGTCGTTGGGGGCGGAGCTTCTGAAAGTGGGCGTGGCTCGATTTGATTGAGCTCATGGGGAACACAGACAAGCACTGATTCTGAGGGATTCTGAAAAAATATTTTTG</canonical>
            <polymorphic>TGGACCACTGGTTGAGTGTGGACTGGAATCGGTGCAATTGGAATTGGAGCTGGCTCGGATTTTCTGAACTTTCATTAACCAGTCCGAAATTGTTTAAAAGCCATACATTTTAAGCTAAAAATCATGTAAATCGGTTGATTTTGAGCAGAGTTACAAGGTTTTGAAAATTTGTGGGGGATGCTGGCCTAGAAATTCTGAACTGTTGGCCATCGGTAGCAGTTTTTTGAACCTAGTCGTGATTATACTTATTTCGAAGCTCTTGACTTGCTGAATTCAAGTATGTAAACTTCATGGACGAATTTTGGGTTTCTAGGCCATGCGGGTCTATTATATGGTCTTGGAATTCAGAAAACTAAGCAACCTGTGACATACTCAGGATCCCCAGTCATGATTTTTGAGCAAATTTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCRTTTTGAAGGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCATGGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTTCTAGGCCACTAACCTCTTTCTCATTTTCTTCGGGGGCTTCTCTTCTACGTCAAGTGGAAAACTCTCAACAATCACATTCATTGATCTAATCCTTTTTCGCTTTTTCGGCTCAATCTTTCTGCATACTGTAGTTTTTATAGTTTGGGGTACTGTAGACGTTGTGGATGATGTTGGTGAGAGGAATGTTGAAGAAGACGTCGAGGAAGCTTCTAGAACCTTCGGTGGATCCTTTTTTCTGAGCAATGCCGCTAAAATCGGCCTCTCCACTTCTAGTTTCGATGGAGGTGGTGATTTTGGAGGCGTCATTTGAGTTGTCGTTGGGGGCGGAGCTTCTGAAAGTGGGCGTGGCTCGATTTGATTGAGCTCATGGGGAACACAGACAAGCACTGATTCTGAGGGATTCTGAAAAAATATTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCTTGGAATTCAGAAAACTA</pcr_primer_p1>
		<pcr_primer_p2>AAAATTAATTGGTGGCCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGTCTTGGAATTCAGAAAACTAAGCAACCTGTGACATACTCAGGATCCCCAGTCATGATTTTTGAGCAAATTTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCATTTTGAAGGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCATGGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTT</canonical_amplicon>
		<polymorphic_amplicon>GGTCTTGGAATTCAGAAAACTAAGCAACCTGTGACATACTCAGGATCCCCAGTCATGATTTTTGAGCAAATTTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCRTTTTGAAGGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCATGGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30418</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>151685</contig_pos>
        <strand></strand>
        <context>tgaaggtctt[A/C]acctgctgat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCATTTTGAAGGTCTT</left_flank>
        <right_flank>ACCTGCTGATTTTGAAAATGAACGTTTCATGGCCAAATTTCGGGGTTTTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTGTGGACTGGAATCGGTGCAATTGGAATTGGAGCTGGCTCGGATTTTCTGAACTTTCATTAACCAGTCCGAAATTGTTTAAAAGCCATACATTTTAAGCTAAAAATCATGTAAATCGGTTGATTTTGAGCAGAGTTACAAGGTTTTGAAAATTTGTGGGGGATGCTGGCCTAGAAATTCTGAACTGTTGGCCATCGGTAGCAGTTTTTTGAACCTAGTCGTGATTATACTTATTTCGAAGCTCTTGACTTGCTGAATTCAAGTATGTAAACTTCATGGACGAATTTTGGGTTTCTAGGCCATGCGGGTCTATTATATGGTCTTGGAATTCAGAAAACTAAGCAACCTGTGACATACTCAGGATCCCCAGTCATGATTTTTGAGCAAATTTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCATTTTGAAGGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCATGGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTTCTAGGCCACTAACCTCTTTCTCATTTTCTTCGGGGGCTTCTCTTCTACGTCAAGTGGAAAACTCTCAACAATCACATTCATTGATCTAATCCTTTTTCGCTTTTTCGGCTCAATCTTTCTGCATACTGTAGTTTTTATAGTTTGGGGTACTGTAGACGTTGTGGATGATGTTGGTGAGAGGAATGTTGAAGAAGACGTCGAGGAAGCTTCTAGAACCTTCGGTGGATCCTTTTTTCTGAGCAATGCCGCTAAAATCGGCCTCTCCACTTCTAGTTTCGATGGAGGTGGTGATTTTGGAGGCGTCATTTGAGTTGTCGTTGGGGGCGGAGCTTCTGAAAGTGGGCGTGGCTCGATTTGATTGAGCTCATGGGGAACACAGACAAGCACTGATTCTGAGGGATTCTGAAAAAATATTTTTGGAATCGGAAAATTT</canonical>
            <polymorphic>AGTGTGGACTGGAATCGGTGCAATTGGAATTGGAGCTGGCTCGGATTTTCTGAACTTTCATTAACCAGTCCGAAATTGTTTAAAAGCCATACATTTTAAGCTAAAAATCATGTAAATCGGTTGATTTTGAGCAGAGTTACAAGGTTTTGAAAATTTGTGGGGGATGCTGGCCTAGAAATTCTGAACTGTTGGCCATCGGTAGCAGTTTTTTGAACCTAGTCGTGATTATACTTATTTCGAAGCTCTTGACTTGCTGAATTCAAGTATGTAAACTTCATGGACGAATTTTGGGTTTCTAGGCCATGCGGGTCTATTATATGGTCTTGGAATTCAGAAAACTAAGCAACCTGTGACATACTCAGGATCCCCAGTCATGATTTTTGAGCAAATTTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCATTTTGAAGGTCTTMACCTGCTGATTTTGAAAATGAACGTTTCATGGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTTCTAGGCCACTAACCTCTTTCTCATTTTCTTCGGGGGCTTCTCTTCTACGTCAAGTGGAAAACTCTCAACAATCACATTCATTGATCTAATCCTTTTTCGCTTTTTCGGCTCAATCTTTCTGCATACTGTAGTTTTTATAGTTTGGGGTACTGTAGACGTTGTGGATGATGTTGGTGAGAGGAATGTTGAAGAAGACGTCGAGGAAGCTTCTAGAACCTTCGGTGGATCCTTTTTTCTGAGCAATGCCGCTAAAATCGGCCTCTCCACTTCTAGTTTCGATGGAGGTGGTGATTTTGGAGGCGTCATTTGAGTTGTCGTTGGGGGCGGAGCTTCTGAAAGTGGGCGTGGCTCGATTTGATTGAGCTCATGGGGAACACAGACAAGCACTGATTCTGAGGGATTCTGAAAAAATATTTTTGGAATCGGAAAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>440 308 94 62 61 19 16</canonical_bands>
                <polymorphic_bands>440 308 156 61 19 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTCTTGGAATTCAGAAAACTA</pcr_primer_p1>
		<pcr_primer_p2>AAAATTAATTGGTGGCCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGTCTTGGAATTCAGAAAACTAAGCAACCTGTGACATACTCAGGATCCCCAGTCATGATTTTTGAGCAAATTTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCATTTTGAAGGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCATGGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTT</canonical_amplicon>
		<polymorphic_amplicon>GGTCTTGGAATTCAGAAAACTAAGCAACCTGTGACATACTCAGGATCCCCAGTCATGATTTTTGAGCAAATTTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCATTTTGAAGGTCTTMACCTGCTGATTTTGAAAATGAACGTTTCATGGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30419</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>151697</contig_pos>
        <strand></strand>
        <context>cctgctgatt[T/A]tgaaaatgaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCAAACCTAGTCATGGTTATGCTCATTTTGAAGGTCTTAACCTGCTGATT</left_flank>
        <right_flank>TGAAAATGAACGTTTCATGGCCAAATTTCGGGGTTTTAGGCCACCAATTA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCGGTGCAATTGGAATTGGAGCTGGCTCGGATTTTCTGAACTTTCATTAACCAGTCCGAAATTGTTTAAAAGCCATACATTTTAAGCTAAAAATCATGTAAATCGGTTGATTTTGAGCAGAGTTACAAGGTTTTGAAAATTTGTGGGGGATGCTGGCCTAGAAATTCTGAACTGTTGGCCATCGGTAGCAGTTTTTTGAACCTAGTCGTGATTATACTTATTTCGAAGCTCTTGACTTGCTGAATTCAAGTATGTAAACTTCATGGACGAATTTTGGGTTTCTAGGCCATGCGGGTCTATTATATGGTCTTGGAATTCAGAAAACTAAGCAACCTGTGACATACTCAGGATCCCCAGTCATGATTTTTGAGCAAATTTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCATTTTGAAGGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCATGGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTTCTAGGCCACTAACCTCTTTCTCATTTTCTTCGGGGGCTTCTCTTCTACGTCAAGTGGAAAACTCTCAACAATCACATTCATTGATCTAATCCTTTTTCGCTTTTTCGGCTCAATCTTTCTGCATACTGTAGTTTTTATAGTTTGGGGTACTGTAGACGTTGTGGATGATGTTGGTGAGAGGAATGTTGAAGAAGACGTCGAGGAAGCTTCTAGAACCTTCGGTGGATCCTTTTTTCTGAGCAATGCCGCTAAAATCGGCCTCTCCACTTCTAGTTTCGATGGAGGTGGTGATTTTGGAGGCGTCATTTGAGTTGTCGTTGGGGGCGGAGCTTCTGAAAGTGGGCGTGGCTCGATTTGATTGAGCTCATGGGGAACACAGACAAGCACTGATTCTGAGGGATTCTGAAAAAATATTTTTGGAATCGGAAAATTTAATTCAATTAAT</canonical>
            <polymorphic>AATCGGTGCAATTGGAATTGGAGCTGGCTCGGATTTTCTGAACTTTCATTAACCAGTCCGAAATTGTTTAAAAGCCATACATTTTAAGCTAAAAATCATGTAAATCGGTTGATTTTGAGCAGAGTTACAAGGTTTTGAAAATTTGTGGGGGATGCTGGCCTAGAAATTCTGAACTGTTGGCCATCGGTAGCAGTTTTTTGAACCTAGTCGTGATTATACTTATTTCGAAGCTCTTGACTTGCTGAATTCAAGTATGTAAACTTCATGGACGAATTTTGGGTTTCTAGGCCATGCGGGTCTATTATATGGTCTTGGAATTCAGAAAACTAAGCAACCTGTGACATACTCAGGATCCCCAGTCATGATTTTTGAGCAAATTTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCATTTTGAAGGTCTTAACCTGCTGATTWTGAAAATGAACGTTTCATGGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTTCTAGGCCACTAACCTCTTTCTCATTTTCTTCGGGGGCTTCTCTTCTACGTCAAGTGGAAAACTCTCAACAATCACATTCATTGATCTAATCCTTTTTCGCTTTTTCGGCTCAATCTTTCTGCATACTGTAGTTTTTATAGTTTGGGGTACTGTAGACGTTGTGGATGATGTTGGTGAGAGGAATGTTGAAGAAGACGTCGAGGAAGCTTCTAGAACCTTCGGTGGATCCTTTTTTCTGAGCAATGCCGCTAAAATCGGCCTCTCCACTTCTAGTTTCGATGGAGGTGGTGATTTTGGAGGCGTCATTTGAGTTGTCGTTGGGGGCGGAGCTTCTGAAAGTGGGCGTGGCTCGATTTGATTGAGCTCATGGGGAACACAGACAAGCACTGATTCTGAGGGATTCTGAAAAAATATTTTTGGAATCGGAAAATTTAATTCAATTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCTTGGAATTCAGAAAACTA</pcr_primer_p1>
		<pcr_primer_p2>AAAATTAATTGGTGGCCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGTCTTGGAATTCAGAAAACTAAGCAACCTGTGACATACTCAGGATCCCCAGTCATGATTTTTGAGCAAATTTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCATTTTGAAGGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCATGGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTT</canonical_amplicon>
		<polymorphic_amplicon>GGTCTTGGAATTCAGAAAACTAAGCAACCTGTGACATACTCAGGATCCCCAGTCATGATTTTTGAGCAAATTTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCATTTTGAAGGTCTTAACCTGCTGATTWTGAAAATGAACGTTTCATGGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30420</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>151716</contig_pos>
        <strand></strand>
        <context>aacgtttcat[G/A]rccaaatttc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGCTCATTTTGAAGGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCAT</left_flank>
        <right_flank>GCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTTCTAGGCCACTAACC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGCTGGCTCGGATTTTCTGAACTTTCATTAACCAGTCCGAAATTGTTTAAAAGCCATACATTTTAAGCTAAAAATCATGTAAATCGGTTGATTTTGAGCAGAGTTACAAGGTTTTGAAAATTTGTGGGGGATGCTGGCCTAGAAATTCTGAACTGTTGGCCATCGGTAGCAGTTTTTTGAACCTAGTCGTGATTATACTTATTTCGAAGCTCTTGACTTGCTGAATTCAAGTATGTAAACTTCATGGACGAATTTTGGGTTTCTAGGCCATGCGGGTCTATTATATGGTCTTGGAATTCAGAAAACTAAGCAACCTGTGACATACTCAGGATCCCCAGTCATGATTTTTGAGCAAATTTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCATTTTGAAGGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCATGGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTTCTAGGCCACTAACCTCTTTCTCATTTTCTTCGGGGGCTTCTCTTCTACGTCAAGTGGAAAACTCTCAACAATCACATTCATTGATCTAATCCTTTTTCGCTTTTTCGGCTCAATCTTTCTGCATACTGTAGTTTTTATAGTTTGGGGTACTGTAGACGTTGTGGATGATGTTGGTGAGAGGAATGTTGAAGAAGACGTCGAGGAAGCTTCTAGAACCTTCGGTGGATCCTTTTTTCTGAGCAATGCCGCTAAAATCGGCCTCTCCACTTCTAGTTTCGATGGAGGTGGTGATTTTGGAGGCGTCATTTGAGTTGTCGTTGGGGGCGGAGCTTCTGAAAGTGGGCGTGGCTCGATTTGATTGAGCTCATGGGGAACACAGACAAGCACTGATTCTGAGGGATTCTGAAAAAATATTTTTGGAATCGGAAAATTTAATTCAATTAATTACCTCCGCTGAATTTTTA</canonical>
            <polymorphic>GGAGCTGGCTCGGATTTTCTGAACTTTCATTAACCAGTCCGAAATTGTTTAAAAGCCATACATTTTAAGCTAAAAATCATGTAAATCGGTTGATTTTGAGCAGAGTTACAAGGTTTTGAAAATTTGTGGGGGATGCTGGCCTAGAAATTCTGAACTGTTGGCCATCGGTAGCAGTTTTTTGAACCTAGTCGTGATTATACTTATTTCGAAGCTCTTGACTTGCTGAATTCAAGTATGTAAACTTCATGGACGAATTTTGGGTTTCTAGGCCATGCGGGTCTATTATATGGTCTTGGAATTCAGAAAACTAAGCAACCTGTGACATACTCAGGATCCCCAGTCATGATTTTTGAGCAAATTTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCATTTTGAAGGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCATRGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTTCTAGGCCACTAACCTCTTTCTCATTTTCTTCGGGGGCTTCTCTTCTACGTCAAGTGGAAAACTCTCAACAATCACATTCATTGATCTAATCCTTTTTCGCTTTTTCGGCTCAATCTTTCTGCATACTGTAGTTTTTATAGTTTGGGGTACTGTAGACGTTGTGGATGATGTTGGTGAGAGGAATGTTGAAGAAGACGTCGAGGAAGCTTCTAGAACCTTCGGTGGATCCTTTTTTCTGAGCAATGCCGCTAAAATCGGCCTCTCCACTTCTAGTTTCGATGGAGGTGGTGATTTTGGAGGCGTCATTTGAGTTGTCGTTGGGGGCGGAGCTTCTGAAAGTGGGCGTGGCTCGATTTGATTGAGCTCATGGGGAACACAGACAAGCACTGATTCTGAGGGATTCTGAAAAAATATTTTTGGAATCGGAAAATTTAATTCAATTAATTACCTCCGCTGAATTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGGCCA</site>
                <isoschizomers>
                    <enzyme>BalI</enzyme>
                    <enzyme>MlsI</enzyme>
                    <enzyme>MluNI</enzyme>
                    <enzyme>MscI</enzyme>
                    <enzyme>Msp20I</enzyme>
                </isoschizomers>
                <canonical_bands>499 340 161</canonical_bands>
                <polymorphic_bands>839 161</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>253 206 139 122 108 88 22 22 20 20</canonical_bands>
                <polymorphic_bands>253 206 139 122 108 108 22 22 20</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 252 159 88</canonical_bands>
                <polymorphic_bands>589 252 159</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>405 167 100 98 78 71 55 26</canonical_bands>
                <polymorphic_bands>460 167 100 98 78 71 26</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>122 101 98 88 72 71 70 58 52 50 47 31 22 22 20 20 19 15 14 4 4</canonical_bands>
                <polymorphic_bands>122 108 101 98 72 71 70 58 52 50 47 31 22 22 20 19 15 14 4 4</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>459 139 122 110 108 22 20 20</canonical_bands>
                <polymorphic_bands>459 139 130 122 108 22 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCAACCTGTGACATACTCAG</pcr_primer_p1>
		<pcr_primer_p2>GAAAATGAGAAAGAGGTTAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AGCAACCTGTGACATACTCAGGATCCCCAGTCATGATTTTTGAGCAAATTTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCATTTTGAAGGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCATGGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTTCTAGGCCACTAACCTCTTTCTCATTTTC</canonical_amplicon>
		<polymorphic_amplicon>AGCAACCTGTGACATACTCAGGATCCCCAGTCATGATTTTTGAGCAAATTTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCATTTTGAAGGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCATRGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTTCTAGGCCACTAACCTCTTTCTCATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30421</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>151717</contig_pos>
        <strand></strand>
        <context>acgtttcatr[G/A]ccaaatttcg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GCTCATTTTGAAGGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCATG</left_flank>
        <right_flank>CCAAATTTCGGGGTTTTAGGCCACCAATTAATTTTCTAGGCCACTAACCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGCTGGCTCGGATTTTCTGAACTTTCATTAACCAGTCCGAAATTGTTTAAAAGCCATACATTTTAAGCTAAAAATCATGTAAATCGGTTGATTTTGAGCAGAGTTACAAGGTTTTGAAAATTTGTGGGGGATGCTGGCCTAGAAATTCTGAACTGTTGGCCATCGGTAGCAGTTTTTTGAACCTAGTCGTGATTATACTTATTTCGAAGCTCTTGACTTGCTGAATTCAAGTATGTAAACTTCATGGACGAATTTTGGGTTTCTAGGCCATGCGGGTCTATTATATGGTCTTGGAATTCAGAAAACTAAGCAACCTGTGACATACTCAGGATCCCCAGTCATGATTTTTGAGCAAATTTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCATTTTGAAGGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCATGGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTTCTAGGCCACTAACCTCTTTCTCATTTTCTTCGGGGGCTTCTCTTCTACGTCAAGTGGAAAACTCTCAACAATCACATTCATTGATCTAATCCTTTTTCGCTTTTTCGGCTCAATCTTTCTGCATACTGTAGTTTTTATAGTTTGGGGTACTGTAGACGTTGTGGATGATGTTGGTGAGAGGAATGTTGAAGAAGACGTCGAGGAAGCTTCTAGAACCTTCGGTGGATCCTTTTTTCTGAGCAATGCCGCTAAAATCGGCCTCTCCACTTCTAGTTTCGATGGAGGTGGTGATTTTGGAGGCGTCATTTGAGTTGTCGTTGGGGGCGGAGCTTCTGAAAGTGGGCGTGGCTCGATTTGATTGAGCTCATGGGGAACACAGACAAGCACTGATTCTGAGGGATTCTGAAAAAATATTTTTGGAATCGGAAAATTTAATTCAATTAATTACCTCCGCTGAATTTTTAA</canonical>
            <polymorphic>GAGCTGGCTCGGATTTTCTGAACTTTCATTAACCAGTCCGAAATTGTTTAAAAGCCATACATTTTAAGCTAAAAATCATGTAAATCGGTTGATTTTGAGCAGAGTTACAAGGTTTTGAAAATTTGTGGGGGATGCTGGCCTAGAAATTCTGAACTGTTGGCCATCGGTAGCAGTTTTTTGAACCTAGTCGTGATTATACTTATTTCGAAGCTCTTGACTTGCTGAATTCAAGTATGTAAACTTCATGGACGAATTTTGGGTTTCTAGGCCATGCGGGTCTATTATATGGTCTTGGAATTCAGAAAACTAAGCAACCTGTGACATACTCAGGATCCCCAGTCATGATTTTTGAGCAAATTTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCATTTTGAAGGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCATGRCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTTCTAGGCCACTAACCTCTTTCTCATTTTCTTCGGGGGCTTCTCTTCTACGTCAAGTGGAAAACTCTCAACAATCACATTCATTGATCTAATCCTTTTTCGCTTTTTCGGCTCAATCTTTCTGCATACTGTAGTTTTTATAGTTTGGGGTACTGTAGACGTTGTGGATGATGTTGGTGAGAGGAATGTTGAAGAAGACGTCGAGGAAGCTTCTAGAACCTTCGGTGGATCCTTTTTTCTGAGCAATGCCGCTAAAATCGGCCTCTCCACTTCTAGTTTCGATGGAGGTGGTGATTTTGGAGGCGTCATTTGAGTTGTCGTTGGGGGCGGAGCTTCTGAAAGTGGGCGTGGCTCGATTTGATTGAGCTCATGGGGAACACAGACAAGCACTGATTCTGAGGGATTCTGAAAAAATATTTTTGGAATCGGAAAATTTAATTCAATTAATTACCTCCGCTGAATTTTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGGCCA</site>
                <isoschizomers>
                    <enzyme>BalI</enzyme>
                    <enzyme>MlsI</enzyme>
                    <enzyme>MluNI</enzyme>
                    <enzyme>MscI</enzyme>
                    <enzyme>Msp20I</enzyme>
                </isoschizomers>
                <canonical_bands>500 340 160</canonical_bands>
                <polymorphic_bands>840 160</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>253 207 138 122 108 88 22 22 20 20</canonical_bands>
                <polymorphic_bands>253 207 138 122 108 108 22 22 20</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 252 158 88</canonical_bands>
                <polymorphic_bands>590 252 158</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>122 102 98 88 72 71 70 58 52 50 47 31 22 22 20 20 19 15 14 4 3</canonical_bands>
                <polymorphic_bands>122 108 102 98 72 71 70 58 52 50 47 31 22 22 20 19 15 14 4 3</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>460 138 122 110 108 22 20 20</canonical_bands>
                <polymorphic_bands>460 138 130 122 108 22 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCAACCTGTGACATACTCAG</pcr_primer_p1>
		<pcr_primer_p2>GAAAATGAGAAAGAGGTTAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AGCAACCTGTGACATACTCAGGATCCCCAGTCATGATTTTTGAGCAAATTTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCATTTTGAAGGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCATGGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTTCTAGGCCACTAACCTCTTTCTCATTTTC</canonical_amplicon>
		<polymorphic_amplicon>AGCAACCTGTGACATACTCAGGATCCCCAGTCATGATTTTTGAGCAAATTTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCATTTTGAAGGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCATGRCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTTCTAGGCCACTAACCTCTTTCTCATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30422</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>151757</contig_pos>
        <strand>+</strand>
        <context>AATTTTCTAG[A/G]CCACTAACCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGTTTCATGGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTTCTAG</left_flank>
        <right_flank>CCACTAACCTCTTTCTCATTTTCTTCGGGGGCTTCTCTTCTACGTCAAGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTGTTTAAAAGCCATACATTTTAAGCTAAAAATCATGTAAATCGGTTGATTTTGAGCAGAGTTACAAGGTTTTGAAAATTTGTGGGGGATGCTGGCCTAGAAATTCTGAACTGTTGGCCATCGGTAGCAGTTTTTTGAACCTAGTCGTGATTATACTTATTTCGAAGCTCTTGACTTGCTGAATTCAAGTATGTAAACTTCATGGACGAATTTTGGGTTTCTAGGCCATGCGGGTCTATTATATGGTCTTGGAATTCAGAAAACTAAGCAACCTGTGACATACTCAGGATCCCCAGTCATGATTTTTGAGCAAATTTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCATTTTGAAGGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCATGGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTTCTAGGCCACTAACCTCTTTCTCATTTTCTTCGGGGGCTTCTCTTCTACGTCAAGTGGAAAACTCTCAACAATCACATTCATTGATCTAATCCTTTTTCGCTTTTTCGGCTCAATCTTTCTGCATACTGTAGTTTTTATAGTTTGGGGTACTGTAGACGTTGTGGATGATGTTGGTGAGAGGAATGTTGAAGAAGACGTCGAGGAAGCTTCTAGAACCTTCGGTGGATCCTTTTTTCTGAGCAATGCCGCTAAAATCGGCCTCTCCACTTCTAGTTTCGATGGAGGTGGTGATTTTGGAGGCGTCATTTGAGTTGTCGTTGGGGGCGGAGCTTCTGAAAGTGGGCGTGGCTCGATTTGATTGAGCTCATGGGGAACACAGACAAGCACTGATTCTGAGGGATTCTGAAAAAATATTTTTGGAATCGGAAAATTTAATTCAATTAATTACCTCCGCTGAATTTTTAAGTTTACACGACATGGACTTTGCTAGAAAACTGCTCAACTG</canonical>
            <polymorphic>AAATTGTTTAAAAGCCATACATTTTAAGCTAAAAATCATGTAAATCGGTTGATTTTGAGCAGAGTTACAAGGTTTTGAAAATTTGTGGGGGATGCTGGCCTAGAAATTCTGAACTGTTGGCCATCGGTAGCAGTTTTTTGAACCTAGTCGTGATTATACTTATTTCGAAGCTCTTGACTTGCTGAATTCAAGTATGTAAACTTCATGGACGAATTTTGGGTTTCTAGGCCATGCGGGTCTATTATATGGTCTTGGAATTCAGAAAACTAAGCAACCTGTGACATACTCAGGATCCCCAGTCATGATTTTTGAGCAAATTTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCATTTTGAAGGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCATGGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTTCTAGRCCACTAACCTCTTTCTCATTTTCTTCGGGGGCTTCTCTTCTACGTCAAGTGGAAAACTCTCAACAATCACATTCATTGATCTAATCCTTTTTCGCTTTTTCGGCTCAATCTTTCTGCATACTGTAGTTTTTATAGTTTGGGGTACTGTAGACGTTGTGGATGATGTTGGTGAGAGGAATGTTGAAGAAGACGTCGAGGAAGCTTCTAGAACCTTCGGTGGATCCTTTTTTCTGAGCAATGCCGCTAAAATCGGCCTCTCCACTTCTAGTTTCGATGGAGGTGGTGATTTTGGAGGCGTCATTTGAGTTGTCGTTGGGGGCGGAGCTTCTGAAAGTGGGCGTGGCTCGATTTGATTGAGCTCATGGGGAACACAGACAAGCACTGATTCTGAGGGATTCTGAAAAAATATTTTTGGAATCGGAAAATTTAATTCAATTAATTACCTCCGCTGAATTTTTAAGTTTACACGACATGGACTTTGCTAGAAAACTGCTCAACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>253 247 122 108 98 88 22 22 20 20</canonical_bands>
                <polymorphic_bands>273 247 122 108 98 88 22 22 20</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>142 122 98 88 72 71 70 58 52 50 31 22 22 20 20 19 15 14 14</canonical_bands>
                <polymorphic_bands>142 122 98 88 72 71 70 58 52 51 50 22 22 20 19 15 14 14</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 122 110 108 98 22 20 20</canonical_bands>
                <polymorphic_bands>520 122 110 108 98 22 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCCCCAGTCATGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCCACTTGACGTAGAAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>GATCCCCAGTCATGATTTTTGAGCAAATTTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCATTTTGAAGGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCATGGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTTCTAGGCCACTAACCTCTTTCTCATTTTCTTCGGGGGCTTCTCTTCTACGTCAAGTGGAA</canonical_amplicon>
		<polymorphic_amplicon>GATCCCCAGTCATGATTTTTGAGCAAATTTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCATTTTGAAGGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCATGGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTTCTAGRCCACTAACCTCTTTCTCATTTTCTTCGGGGGCTTCTCTTCTACGTCAAGTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30423</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>151956</contig_pos>
        <strand>+</strand>
        <context>GACGTCGAGG[A/G]AGCTTCTAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGACGTTGTGGATGATGTTGGTGAGAGGAATGTTGAAGAAGACGTCGAGG</left_flank>
        <right_flank>AGCTTCTAGAACCTTCGGTGGATCCTTTTTTCTGAGCAATGCCGCTAAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTCATGGACGAATTTTGGGTTTCTAGGCCATGCGGGTCTATTATATGGTCTTGGAATTCAGAAAACTAAGCAACCTGTGACATACTCAGGATCCCCAGTCATGATTTTTGAGCAAATTTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCATTTTGAAGGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCATGGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTTCTAGGCCACTAACCTCTTTCTCATTTTCTTCGGGGGCTTCTCTTCTACGTCAAGTGGAAAACTCTCAACAATCACATTCATTGATCTAATCCTTTTTCGCTTTTTCGGCTCAATCTTTCTGCATACTGTAGTTTTTATAGTTTGGGGTACTGTAGACGTTGTGGATGATGTTGGTGAGAGGAATGTTGAAGAAGACGTCGAGGAAGCTTCTAGAACCTTCGGTGGATCCTTTTTTCTGAGCAATGCCGCTAAAATCGGCCTCTCCACTTCTAGTTTCGATGGAGGTGGTGATTTTGGAGGCGTCATTTGAGTTGTCGTTGGGGGCGGAGCTTCTGAAAGTGGGCGTGGCTCGATTTGATTGAGCTCATGGGGAACACAGACAAGCACTGATTCTGAGGGATTCTGAAAAAATATTTTTGGAATCGGAAAATTTAATTCAATTAATTACCTCCGCTGAATTTTTAAGTTTACACGACATGGACTTTGCTAGAAAACTGCTCAACTGGATTTGAGCCAAAAGAAGGTTGTTAGGGTCCAGAAATGACAATTTTGAAGCTGATTCGAAATCCAAGAAACATCGAATATCTTTACCGAGCATCTTTTTCTGAAAAATATTTTTTTTTGGGAATTTTCAGCTACTTTTATATAATTTTTAGAAAACCGAAAATTTTGAGAAAAAGTGAACGTTTTAGAAAATATAAAAT</canonical>
            <polymorphic>ACTTCATGGACGAATTTTGGGTTTCTAGGCCATGCGGGTCTATTATATGGTCTTGGAATTCAGAAAACTAAGCAACCTGTGACATACTCAGGATCCCCAGTCATGATTTTTGAGCAAATTTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCATTTTGAAGGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCATGGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTTCTAGGCCACTAACCTCTTTCTCATTTTCTTCGGGGGCTTCTCTTCTACGTCAAGTGGAAAACTCTCAACAATCACATTCATTGATCTAATCCTTTTTCGCTTTTTCGGCTCAATCTTTCTGCATACTGTAGTTTTTATAGTTTGGGGTACTGTAGACGTTGTGGATGATGTTGGTGAGAGGAATGTTGAAGAAGACGTCGAGGRAGCTTCTAGAACCTTCGGTGGATCCTTTTTTCTGAGCAATGCCGCTAAAATCGGCCTCTCCACTTCTAGTTTCGATGGAGGTGGTGATTTTGGAGGCGTCATTTGAGTTGTCGTTGGGGGCGGAGCTTCTGAAAGTGGGCGTGGCTCGATTTGATTGAGCTCATGGGGAACACAGACAAGCACTGATTCTGAGGGATTCTGAAAAAATATTTTTGGAATCGGAAAATTTAATTCAATTAATTACCTCCGCTGAATTTTTAAGTTTACACGACATGGACTTTGCTAGAAAACTGCTCAACTGGATTTGAGCCAAAAGAAGGTTGTTAGGGTCCAGAAATGACAATTTTGAAGCTGATTCGAAATCCAAGAAACATCGAATATCTTTACCGAGCATCTTTTTCTGAAAAATATTTTTTTTTGGGAATTTTCAGCTACTTTTATATAATTTTTAGAAAACCGAAAATTTTGAGAAAAAGTGAACGTTTTAGAAAATATAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTACTGTAGACGTTGTGGATGAT</pcr_primer_p1>
		<pcr_primer_p2>TCAGAATCAGTGCTTGTCTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTACTGTAGACGTTGTGGATGATGTTGGTGAGAGGAATGTTGAAGAAGACGTCGAGGAAGCTTCTAGAACCTTCGGTGGATCCTTTTTTCTGAGCAATGCCGCTAAAATCGGCCTCTCCACTTCTAGTTTCGATGGAGGTGGTGATTTTGGAGGCGTCATTTGAGTTGTCGTTGGGGGCGGAGCTTCTGAAAGTGGGCGTGGCTCGATTTGATTGAGCTCATGGGGAACACAGACAAGCACTGATTCTGA</canonical_amplicon>
		<polymorphic_amplicon>GTACTGTAGACGTTGTGGATGATGTTGGTGAGAGGAATGTTGAAGAAGACGTCGAGGRAGCTTCTAGAACCTTCGGTGGATCCTTTTTTCTGAGCAATGCCGCTAAAATCGGCCTCTCCACTTCTAGTTTCGATGGAGGTGGTGATTTTGGAGGCGTCATTTGAGTTGTCGTTGGGGGCGGAGCTTCTGAAAGTGGGCGTGGCTCGATTTGATTGAGCTCATGGGGAACACAGACAAGCACTGATTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30424</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>152041</contig_pos>
        <strand>+</strand>
        <context>ATGGAGGTGG[G/T]GATTTTGGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGCAATGCCGCTAAAATCGGCCTCTCCACTTCTAGTTTCGATGGAGGTGG</left_flank>
        <right_flank>GATTTTGGAGGCGTCATTTGAGTTGTCGTTGGGGGCGGAGCTTCTGAAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCAGGATCCCCAGTCATGATTTTTGAGCAAATTTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCATTTTGAAGGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCATGGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTTCTAGGCCACTAACCTCTTTCTCATTTTCTTCGGGGGCTTCTCTTCTACGTCAAGTGGAAAACTCTCAACAATCACATTCATTGATCTAATCCTTTTTCGCTTTTTCGGCTCAATCTTTCTGCATACTGTAGTTTTTATAGTTTGGGGTACTGTAGACGTTGTGGATGATGTTGGTGAGAGGAATGTTGAAGAAGACGTCGAGGAAGCTTCTAGAACCTTCGGTGGATCCTTTTTTCTGAGCAATGCCGCTAAAATCGGCCTCTCCACTTCTAGTTTCGATGGAGGTGGTGATTTTGGAGGCGTCATTTGAGTTGTCGTTGGGGGCGGAGCTTCTGAAAGTGGGCGTGGCTCGATTTGATTGAGCTCATGGGGAACACAGACAAGCACTGATTCTGAGGGATTCTGAAAAAATATTTTTGGAATCGGAAAATTTAATTCAATTAATTACCTCCGCTGAATTTTTAAGTTTACACGACATGGACTTTGCTAGAAAACTGCTCAACTGGATTTGAGCCAAAAGAAGGTTGTTAGGGTCCAGAAATGACAATTTTGAAGCTGATTCGAAATCCAAGAAACATCGAATATCTTTACCGAGCATCTTTTTCTGAAAAATATTTTTTTTTGGGAATTTTCAGCTACTTTTATATAATTTTTAGAAAACCGAAAATTTTGAGAAAAAGTGAACGTTTTAGAAAATATAAAATATATACAAACTGTTCAGGCACAAATCATTAAAATCTGTTGATTTTGAGAAAAGTTACAGGGTTTTGAGAAAATAAGGGTTAGCTG</canonical>
            <polymorphic>ACTCAGGATCCCCAGTCATGATTTTTGAGCAAATTTACATAGCAAAGTTAAATAGGGTTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACAGGTAACAGTTTTTCAAACCTAGTCATGGTTATGCTCATTTTGAAGGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCATGGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTTCTAGGCCACTAACCTCTTTCTCATTTTCTTCGGGGGCTTCTCTTCTACGTCAAGTGGAAAACTCTCAACAATCACATTCATTGATCTAATCCTTTTTCGCTTTTTCGGCTCAATCTTTCTGCATACTGTAGTTTTTATAGTTTGGGGTACTGTAGACGTTGTGGATGATGTTGGTGAGAGGAATGTTGAAGAAGACGTCGAGGAAGCTTCTAGAACCTTCGGTGGATCCTTTTTTCTGAGCAATGCCGCTAAAATCGGCCTCTCCACTTCTAGTTTCGATGGAGGTGGKGATTTTGGAGGCGTCATTTGAGTTGTCGTTGGGGGCGGAGCTTCTGAAAGTGGGCGTGGCTCGATTTGATTGAGCTCATGGGGAACACAGACAAGCACTGATTCTGAGGGATTCTGAAAAAATATTTTTGGAATCGGAAAATTTAATTCAATTAATTACCTCCGCTGAATTTTTAAGTTTACACGACATGGACTTTGCTAGAAAACTGCTCAACTGGATTTGAGCCAAAAGAAGGTTGTTAGGGTCCAGAAATGACAATTTTGAAGCTGATTCGAAATCCAAGAAACATCGAATATCTTTACCGAGCATCTTTTTCTGAAAAATATTTTTTTTTGGGAATTTTCAGCTACTTTTATATAATTTTTAGAAAACCGAAAATTTTGAGAAAAAGTGAACGTTTTAGAAAATATAAAATATATACAAACTGTTCAGGCACAAATCATTAAAATCTGTTGATTTTGAGAAAAGTTACAGGGTTTTGAGAAAATAAGGGTTAGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>210 108 89 86 65 65 51 48 48 42 42 29 26 21 20 18 13 10 6 3</canonical_bands>
                <polymorphic_bands>210 108 89 86 65 65 54 48 48 42 42 29 26 21 20 18 13 10 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTACTGTAGACGTTGTGGATGAT</pcr_primer_p1>
		<pcr_primer_p2>TCAGAATCAGTGCTTGTCTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTACTGTAGACGTTGTGGATGATGTTGGTGAGAGGAATGTTGAAGAAGACGTCGAGGAAGCTTCTAGAACCTTCGGTGGATCCTTTTTTCTGAGCAATGCCGCTAAAATCGGCCTCTCCACTTCTAGTTTCGATGGAGGTGGTGATTTTGGAGGCGTCATTTGAGTTGTCGTTGGGGGCGGAGCTTCTGAAAGTGGGCGTGGCTCGATTTGATTGAGCTCATGGGGAACACAGACAAGCACTGATTCTGA</canonical_amplicon>
		<polymorphic_amplicon>GTACTGTAGACGTTGTGGATGATGTTGGTGAGAGGAATGTTGAAGAAGACGTCGAGGAAGCTTCTAGAACCTTCGGTGGATCCTTTTTTCTGAGCAATGCCGCTAAAATCGGCCTCTCCACTTCTAGTTTCGATGGAGGTGGKGATTTTGGAGGCGTCATTTGAGTTGTCGTTGGGGGCGGAGCTTCTGAAAGTGGGCGTGGCTCGATTTGATTGAGCTCATGGGGAACACAGACAAGCACTGATTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30425</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>152178</contig_pos>
        <strand>+</strand>
        <context>TTTGGAATCG[A/G]AAAATTTAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAGACAAGCACTGATTCTGAGGGATTCTGAAAAAATATTTTTGGAATCG</left_flank>
        <right_flank>AAAATTTAATTCAATTAATTACCTCCGCTGAATTTTTAAGTTTACACGAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCATGGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTTCTAGGCCACTAACCTCTTTCTCATTTTCTTCGGGGGCTTCTCTTCTACGTCAAGTGGAAAACTCTCAACAATCACATTCATTGATCTAATCCTTTTTCGCTTTTTCGGCTCAATCTTTCTGCATACTGTAGTTTTTATAGTTTGGGGTACTGTAGACGTTGTGGATGATGTTGGTGAGAGGAATGTTGAAGAAGACGTCGAGGAAGCTTCTAGAACCTTCGGTGGATCCTTTTTTCTGAGCAATGCCGCTAAAATCGGCCTCTCCACTTCTAGTTTCGATGGAGGTGGTGATTTTGGAGGCGTCATTTGAGTTGTCGTTGGGGGCGGAGCTTCTGAAAGTGGGCGTGGCTCGATTTGATTGAGCTCATGGGGAACACAGACAAGCACTGATTCTGAGGGATTCTGAAAAAATATTTTTGGAATCGGAAAATTTAATTCAATTAATTACCTCCGCTGAATTTTTAAGTTTACACGACATGGACTTTGCTAGAAAACTGCTCAACTGGATTTGAGCCAAAAGAAGGTTGTTAGGGTCCAGAAATGACAATTTTGAAGCTGATTCGAAATCCAAGAAACATCGAATATCTTTACCGAGCATCTTTTTCTGAAAAATATTTTTTTTTGGGAATTTTCAGCTACTTTTATATAATTTTTAGAAAACCGAAAATTTTGAGAAAAAGTGAACGTTTTAGAAAATATAAAATATATACAAACTGTTCAGGCACAAATCATTAAAATCTGTTGATTTTGAGAAAAGTTACAGGGTTTTGAGAAAATAAGGGTTAGCTGGCCTAGAAATTCCGAAAAGTCGGCCATTGGTAAAAATTTTTAGAACCTAGTCATGATTATACTCATTTTGAAGCTCTTGGCATGCTTAATTCAAAAATTTAAGCTTCGTTGCCGAATTTTGGGTTTCTAGGCCATGG</canonical>
            <polymorphic>GGTCTTAACCTGCTGATTTTGAAAATGAACGTTTCATGGCCAAATTTCGGGGTTTTAGGCCACCAATTAATTTTCTAGGCCACTAACCTCTTTCTCATTTTCTTCGGGGGCTTCTCTTCTACGTCAAGTGGAAAACTCTCAACAATCACATTCATTGATCTAATCCTTTTTCGCTTTTTCGGCTCAATCTTTCTGCATACTGTAGTTTTTATAGTTTGGGGTACTGTAGACGTTGTGGATGATGTTGGTGAGAGGAATGTTGAAGAAGACGTCGAGGAAGCTTCTAGAACCTTCGGTGGATCCTTTTTTCTGAGCAATGCCGCTAAAATCGGCCTCTCCACTTCTAGTTTCGATGGAGGTGGTGATTTTGGAGGCGTCATTTGAGTTGTCGTTGGGGGCGGAGCTTCTGAAAGTGGGCGTGGCTCGATTTGATTGAGCTCATGGGGAACACAGACAAGCACTGATTCTGAGGGATTCTGAAAAAATATTTTTGGAATCGRAAAATTTAATTCAATTAATTACCTCCGCTGAATTTTTAAGTTTACACGACATGGACTTTGCTAGAAAACTGCTCAACTGGATTTGAGCCAAAAGAAGGTTGTTAGGGTCCAGAAATGACAATTTTGAAGCTGATTCGAAATCCAAGAAACATCGAATATCTTTACCGAGCATCTTTTTCTGAAAAATATTTTTTTTTGGGAATTTTCAGCTACTTTTATATAATTTTTAGAAAACCGAAAATTTTGAGAAAAAGTGAACGTTTTAGAAAATATAAAATATATACAAACTGTTCAGGCACAAATCATTAAAATCTGTTGATTTTGAGAAAAGTTACAGGGTTTTGAGAAAATAAGGGTTAGCTGGCCTAGAAATTCCGAAAAGTCGGCCATTGGTAAAAATTTTTAGAACCTAGTCATGATTATACTCATTTTGAAGCTCTTGGCATGCTTAATTCAAAAATTTAAGCTTCGTTGCCGAATTTTGGGTTTCTAGGCCATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>311 196 181 124 97 60 21 10</canonical_bands>
                <polymorphic_bands>311 202 196 124 97 60 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTCTAGTTTCGATGGAGGT</pcr_primer_p1>
		<pcr_primer_p2>AATCCAGTTGAGCAGTTTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACTTCTAGTTTCGATGGAGGTGGTGATTTTGGAGGCGTCATTTGAGTTGTCGTTGGGGGCGGAGCTTCTGAAAGTGGGCGTGGCTCGATTTGATTGAGCTCATGGGGAACACAGACAAGCACTGATTCTGAGGGATTCTGAAAAAATATTTTTGGAATCGGAAAATTTAATTCAATTAATTACCTCCGCTGAATTTTTAAGTTTACACGACATGGACTTTGCTAGAAAACTGCTCAACTGGATT</canonical_amplicon>
		<polymorphic_amplicon>ACTTCTAGTTTCGATGGAGGTGGTGATTTTGGAGGCGTCATTTGAGTTGTCGTTGGGGGCGGAGCTTCTGAAAGTGGGCGTGGCTCGATTTGATTGAGCTCATGGGGAACACAGACAAGCACTGATTCTGAGGGATTCTGAAAAAATATTTTTGGAATCGRAAAATTTAATTCAATTAATTACCTCCGCTGAATTTTTAAGTTTACACGACATGGACTTTGCTAGAAAACTGCTCAACTGGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30426</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>182283</contig_pos>
        <strand>+</strand>
        <context>TGAGACGACG[C/T]TCCGCCATCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAGGTACTGGAAACTCTTGGTGGAGAAGAGCCGAATTTTTGAGACGACG</left_flank>
        <right_flank>TCCGCCATCGCGGTTTTTTTCTTGTTTCGAGCTGAAAATGTTCTTTTTTT</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAAAAAAAAACTACAGTAATCCAAAAATCCAGGTTCTCGAGAGTATTACCTTAAGGCTTGTAACCGGGTCACATCTAGATGTGTAGTATCGATTGATTTGGATTTCGAAAGACGGGAGGCTTTGACTTTTAGGTTGTTCCAGCTCAGTTTTGAGGTGCTCGGGAGGAATGAAAGTTTTCTGAAATGAAATTAAATTGCGCTAAAATTACCATAACTCTGAGGTCAATTATCTCTGTTCCTATGAAAGATAACAAAAAGTGGTTAACTGATAAAATAGTTCTGATATTATGATTAACATTTTATCAGTTACCCACTTTTTGGTATCTTTCGAAAGAAATGAGATATATGCTCTCAAAGTTGCCGGCTTGGATAATTTCAAAAACTCACAATCTGCCATTGGAATGTATAGAGGATATACTCATATTCCTTTGACCAGACTGAAACATTTGAGGTACTGGAAACTCTTGGTGGAGAAGAGCCGAATTTTTGAGACGACGTTCCGCCATCGCGGTTTTTTTCTTGTTTCGAGCTGAAAATGTTCTTTTTTTTCTGAAAATTTCGATTTTCAAAAATTATTACACGACGTCTTCTGATTGATATCGGTATGACCTGTCTGGTAGCCAGCGTTTCGAAGGATTCCAAGAAGTTCGTAGCGAAACGCGCTGATGTCCTGAAAATTGCGATTTTTTGGATTTCTTGATTATTTCGAAATTAAAAAACTCCAAAAATCAATTCTCGGAGAGCCAAGTTAGTGTATATTTTTAGCTCAATTATCTCGATTTCTGTAAAAGATATCAAAAAGTGGCCAACCGAGAAAATGTTTATCATAATATCCTTAACATTTTATCAGTTTACCACTTTTTGATATCTCTCATAAGAAAAAAAATCTAGGTCACGACCCAAAAAATCTAGGTCATGACCTAAAAAATATAGGTCATGACCTAAAAAATATAGGTCATGACCTAAAAAATCTAGGTCACGACCTAAAAAATCTCGGT</canonical>
            <polymorphic>TGAAAAAAAAAACTACAGTAATCCAAAAATCCAGGTTCTCGAGAGTATTACCTTAAGGCTTGTAACCGGGTCACATCTAGATGTGTAGTATCGATTGATTTGGATTTCGAAAGACGGGAGGCTTTGACTTTTAGGTTGTTCCAGCTCAGTTTTGAGGTGCTCGGGAGGAATGAAAGTTTTCTGAAATGAAATTAAATTGCGCTAAAATTACCATAACTCTGAGGTCAATTATCTCTGTTCCTATGAAAGATAACAAAAAGTGGTTAACTGATAAAATAGTTCTGATATTATGATTAACATTTTATCAGTTACCCACTTTTTGGTATCTTTCGAAAGAAATGAGATATATGCTCTCAAAGTTGCCGGCTTGGATAATTTCAAAAACTCACAATCTGCCATTGGAATGTATAGAGGATATACTCATATTCCTTTGACCAGACTGAAACATTTGAGGTACTGGAAACTCTTGGTGGAGAAGAGCCGAATTTTTGAGACGACGYTCCGCCATCGCGGTTTTTTTCTTGTTTCGAGCTGAAAATGTTCTTTTTTTTCTGAAAATTTCGATTTTCAAAAATTATTACACGACGTCTTCTGATTGATATCGGTATGACCTGTCTGGTAGCCAGCGTTTCGAAGGATTCCAAGAAGTTCGTAGCGAAACGCGCTGATGTCCTGAAAATTGCGATTTTTTGGATTTCTTGATTATTTCGAAATTAAAAAACTCCAAAAATCAATTCTCGGAGAGCCAAGTTAGTGTATATTTTTAGCTCAATTATCTCGATTTCTGTAAAAGATATCAAAAAGTGGCCAACCGAGAAAATGTTTATCATAATATCCTTAACATTTTATCAGTTTACCACTTTTTGATATCTCTCATAAGAAAAAAAATCTAGGTCACGACCCAAAAAATCTAGGTCATGACCTAAAAAATATAGGTCATGACCTAAAAAATATAGGTCATGACCTAAAAAATCTAGGTCACGACCTAAAAAATCTCGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>497 415 88</canonical_bands>
                <polymorphic_bands>585 415</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTGGATAATTTCAAAAACTCAC</pcr_primer_p1>
		<pcr_primer_p2>GTCATACCGATATCAATCAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTTGGATAATTTCAAAAACTCACAATCTGCCATTGGAATGTATAGAGGATATACTCATATTCCTTTGACCAGACTGAAACATTTGAGGTACTGGAAACTCTTGGTGGAGAAGAGCCGAATTTTTGAGACGACGTTCCGCCATCGCGGTTTTTTTCTTGTTTCGAGCTGAAAATGTTCTTTTTTTTCTGAAAATTTCGATTTTCAAAAATTATTACACGACGTCTTCTGATTGATATCGGTATGAC</canonical_amplicon>
		<polymorphic_amplicon>CTTGGATAATTTCAAAAACTCACAATCTGCCATTGGAATGTATAGAGGATATACTCATATTCCTTTGACCAGACTGAAACATTTGAGGTACTGGAAACTCTTGGTGGAGAAGAGCCGAATTTTTGAGACGACGYTCCGCCATCGCGGTTTTTTTCTTGTTTCGAGCTGAAAATGTTCTTTTTTTTCTGAAAATTTCGATTTTCAAAAATTATTACACGACGTCTTCTGATTGATATCGGTATGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30427</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>182332</contig_pos>
        <strand>+</strand>
        <context>TKTTCTTTTT[C/T]TTCTGAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTCCGCCATCGCGGTTTTTTTCTTGTTTCGAGCTGAAAATGTTCTTTTT</left_flank>
        <right_flank>TTCTGAAAATTTCGATTTTCAAAAATTATTACACGACGTCTTCTGATTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTTAAGGCTTGTAACCGGGTCACATCTAGATGTGTAGTATCGATTGATTTGGATTTCGAAAGACGGGAGGCTTTGACTTTTAGGTTGTTCCAGCTCAGTTTTGAGGTGCTCGGGAGGAATGAAAGTTTTCTGAAATGAAATTAAATTGCGCTAAAATTACCATAACTCTGAGGTCAATTATCTCTGTTCCTATGAAAGATAACAAAAAGTGGTTAACTGATAAAATAGTTCTGATATTATGATTAACATTTTATCAGTTACCCACTTTTTGGTATCTTTCGAAAGAAATGAGATATATGCTCTCAAAGTTGCCGGCTTGGATAATTTCAAAAACTCACAATCTGCCATTGGAATGTATAGAGGATATACTCATATTCCTTTGACCAGACTGAAACATTTGAGGTACTGGAAACTCTTGGTGGAGAAGAGCCGAATTTTTGAGACGACGTTCCGCCATCGCGGTTTTTTTCTTGTTTCGAGCTGAAAATGTTCTTTTTTTTCTGAAAATTTCGATTTTCAAAAATTATTACACGACGTCTTCTGATTGATATCGGTATGACCTGTCTGGTAGCCAGCGTTTCGAAGGATTCCAAGAAGTTCGTAGCGAAACGCGCTGATGTCCTGAAAATTGCGATTTTTTGGATTTCTTGATTATTTCGAAATTAAAAAACTCCAAAAATCAATTCTCGGAGAGCCAAGTTAGTGTATATTTTTAGCTCAATTATCTCGATTTCTGTAAAAGATATCAAAAAGTGGCCAACCGAGAAAATGTTTATCATAATATCCTTAACATTTTATCAGTTTACCACTTTTTGATATCTCTCATAAGAAAAAAAATCTAGGTCACGACCCAAAAAATCTAGGTCATGACCTAAAAAATATAGGTCATGACCTAAAAAATATAGGTCATGACCTAAAAAATCTAGGTCACGACCTAAAAAATCTCGGTCATGACCTAAAAAATATAGGTCATGGCCTAAAAAATATAGGTCACGACA</canonical>
            <polymorphic>ACCTTAAGGCTTGTAACCGGGTCACATCTAGATGTGTAGTATCGATTGATTTGGATTTCGAAAGACGGGAGGCTTTGACTTTTAGGTTGTTCCAGCTCAGTTTTGAGGTGCTCGGGAGGAATGAAAGTTTTCTGAAATGAAATTAAATTGCGCTAAAATTACCATAACTCTGAGGTCAATTATCTCTGTTCCTATGAAAGATAACAAAAAGTGGTTAACTGATAAAATAGTTCTGATATTATGATTAACATTTTATCAGTTACCCACTTTTTGGTATCTTTCGAAAGAAATGAGATATATGCTCTCAAAGTTGCCGGCTTGGATAATTTCAAAAACTCACAATCTGCCATTGGAATGTATAGAGGATATACTCATATTCCTTTGACCAGACTGAAACATTTGAGGTACTGGAAACTCTTGGTGGAGAAGAGCCGAATTTTTGAGACGACGTTCCGCCATCGCGGTTTTTTTCTTGTTTCGAGCTGAAAATGTTCTTTTTYTTCTGAAAATTTCGATTTTCAAAAATTATTACACGACGTCTTCTGATTGATATCGGTATGACCTGTCTGGTAGCCAGCGTTTCGAAGGATTCCAAGAAGTTCGTAGCGAAACGCGCTGATGTCCTGAAAATTGCGATTTTTTGGATTTCTTGATTATTTCGAAATTAAAAAACTCCAAAAATCAATTCTCGGAGAGCCAAGTTAGTGTATATTTTTAGCTCAATTATCTCGATTTCTGTAAAAGATATCAAAAAGTGGCCAACCGAGAAAATGTTTATCATAATATCCTTAACATTTTATCAGTTTACCACTTTTTGATATCTCTCATAAGAAAAAAAATCTAGGTCACGACCCAAAAAATCTAGGTCATGACCTAAAAAATATAGGTCATGACCTAAAAAATATAGGTCATGACCTAAAAAATCTAGGTCACGACCTAAAAAATCTCGGTCATGACCTAAAAAATATAGGTCATGGCCTAAAAAATATAGGTCACGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGGATAATTTCAAAAACTCAC</pcr_primer_p1>
		<pcr_primer_p2>GTCATACCGATATCAATCAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTTGGATAATTTCAAAAACTCACAATCTGCCATTGGAATGTATAGAGGATATACTCATATTCCTTTGACCAGACTGAAACATTTGAGGTACTGGAAACTCTTGGTGGAGAAGAGCCGAATTTTTGAGACGACGTTCCGCCATCGCGGTTTTTTTCTTGTTTCGAGCTGAAAATGTTCTTTTTTTTCTGAAAATTTCGATTTTCAAAAATTATTACACGACGTCTTCTGATTGATATCGGTATGAC</canonical_amplicon>
		<polymorphic_amplicon>CTTGGATAATTTCAAAAACTCACAATCTGCCATTGGAATGTATAGAGGATATACTCATATTCCTTTGACCAGACTGAAACATTTGAGGTACTGGAAACTCTTGGTGGAGAAGAGCCGAATTTTTGAGACGACGTTCCGCCATCGCGGTTTTTTTCTTGTTTCGAGCTGAAAATGTTCTTTTTYTTCTGAAAATTTCGATTTTCAAAAATTATTACACGACGTCTTCTGATTGATATCGGTATGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30428</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>182355</contig_pos>
        <strand>+</strand>
        <context>CGATTTTCAA[A/G]AATTATTACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGTTTCGAGCTGAAAATGTTCTTTTTTTTCTGAAAATTTCGATTTTCAA</left_flank>
        <right_flank>AATTATTACACGACGTCTTCTGATTGATATCGGTATGACCTGTCTGGTAG</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATCTAGATGTGTAGTATCGATTGATTTGGATTTCGAAAGACGGGAGGCTTTGACTTTTAGGTTGTTCCAGCTCAGTTTTGAGGTGCTCGGGAGGAATGAAAGTTTTCTGAAATGAAATTAAATTGCGCTAAAATTACCATAACTCTGAGGTCAATTATCTCTGTTCCTATGAAAGATAACAAAAAGTGGTTAACTGATAAAATAGTTCTGATATTATGATTAACATTTTATCAGTTACCCACTTTTTGGTATCTTTCGAAAGAAATGAGATATATGCTCTCAAAGTTGCCGGCTTGGATAATTTCAAAAACTCACAATCTGCCATTGGAATGTATAGAGGATATACTCATATTCCTTTGACCAGACTGAAACATTTGAGGTACTGGAAACTCTTGGTGGAGAAGAGCCGAATTTTTGAGACGACGTTCCGCCATCGCGGTTTTTTTCTTGTTTCGAGCTGAAAATGTTCTTTTTTTTCTGAAAATTTCGATTTTCAAAAATTATTACACGACGTCTTCTGATTGATATCGGTATGACCTGTCTGGTAGCCAGCGTTTCGAAGGATTCCAAGAAGTTCGTAGCGAAACGCGCTGATGTCCTGAAAATTGCGATTTTTTGGATTTCTTGATTATTTCGAAATTAAAAAACTCCAAAAATCAATTCTCGGAGAGCCAAGTTAGTGTATATTTTTAGCTCAATTATCTCGATTTCTGTAAAAGATATCAAAAAGTGGCCAACCGAGAAAATGTTTATCATAATATCCTTAACATTTTATCAGTTTACCACTTTTTGATATCTCTCATAAGAAAAAAAATCTAGGTCACGACCCAAAAAATCTAGGTCATGACCTAAAAAATATAGGTCATGACCTAAAAAATATAGGTCATGACCTAAAAAATCTAGGTCACGACCTAAAAAATCTCGGTCATGACCTAAAAAATATAGGTCATGGCCTAAAAAATATAGGTCACGACACAAAAAATTCTAGGTCATGACCT</canonical>
            <polymorphic>ACATCTAGATGTGTAGTATCGATTGATTTGGATTTCGAAAGACGGGAGGCTTTGACTTTTAGGTTGTTCCAGCTCAGTTTTGAGGTGCTCGGGAGGAATGAAAGTTTTCTGAAATGAAATTAAATTGCGCTAAAATTACCATAACTCTGAGGTCAATTATCTCTGTTCCTATGAAAGATAACAAAAAGTGGTTAACTGATAAAATAGTTCTGATATTATGATTAACATTTTATCAGTTACCCACTTTTTGGTATCTTTCGAAAGAAATGAGATATATGCTCTCAAAGTTGCCGGCTTGGATAATTTCAAAAACTCACAATCTGCCATTGGAATGTATAGAGGATATACTCATATTCCTTTGACCAGACTGAAACATTTGAGGTACTGGAAACTCTTGGTGGAGAAGAGCCGAATTTTTGAGACGACGTTCCGCCATCGCGGTTTTTTTCTTGTTTCGAGCTGAAAATGTTCTTTTTTTTCTGAAAATTTCGATTTTCAARAATTATTACACGACGTCTTCTGATTGATATCGGTATGACCTGTCTGGTAGCCAGCGTTTCGAAGGATTCCAAGAAGTTCGTAGCGAAACGCGCTGATGTCCTGAAAATTGCGATTTTTTGGATTTCTTGATTATTTCGAAATTAAAAAACTCCAAAAATCAATTCTCGGAGAGCCAAGTTAGTGTATATTTTTAGCTCAATTATCTCGATTTCTGTAAAAGATATCAAAAAGTGGCCAACCGAGAAAATGTTTATCATAATATCCTTAACATTTTATCAGTTTACCACTTTTTGATATCTCTCATAAGAAAAAAAATCTAGGTCACGACCCAAAAAATCTAGGTCATGACCTAAAAAATATAGGTCATGACCTAAAAAATATAGGTCATGACCTAAAAAATCTAGGTCACGACCTAAAAAATCTCGGTCATGACCTAAAAAATATAGGTCATGGCCTAAAAAATATAGGTCACGACACAAAAAATTCTAGGTCATGACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATATACTCATATTCCTTTGACC</pcr_primer_p1>
		<pcr_primer_p2>GTTTCGCTACGAACTTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGATATACTCATATTCCTTTGACCAGACTGAAACATTTGAGGTACTGGAAACTCTTGGTGGAGAAGAGCCGAATTTTTGAGACGACGTTCCGCCATCGCGGTTTTTTTCTTGTTTCGAGCTGAAAATGTTCTTTTTTTTCTGAAAATTTCGATTTTCAAAAATTATTACACGACGTCTTCTGATTGATATCGGTATGACCTGTCTGGTAGCCAGCGTTTCGAAGGATTCCAAGAAGTTCGTAGCGAAAC</canonical_amplicon>
		<polymorphic_amplicon>GGATATACTCATATTCCTTTGACCAGACTGAAACATTTGAGGTACTGGAAACTCTTGGTGGAGAAGAGCCGAATTTTTGAGACGACGTTCCGCCATCGCGGTTTTTTTCTTGTTTCGAGCTGAAAATGTTCTTTTTTTTCTGAAAATTTCGATTTTCAARAATTATTACACGACGTCTTCTGATTGATATCGGTATGACCTGTCTGGTAGCCAGCGTTTCGAAGGATTCCAAGAAGTTCGTAGCGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30429</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>183788</contig_pos>
        <strand></strand>
        <context>tatcaaaaat[T/C]tgtaaactta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAAT</left_flank>
        <right_flank>TGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAAATATTGCTGATATTATGATAAATATTTTATCAGTTGACAGATTTTTGATATCTTTTACAGGAATCGAGATAATCAAGCTCAAAGTTGGCTGTTCGAGTGGGCTTCTAAGAGAGTAGTACTGTAATCACTGCAAAAACCAAAAACGATAAATTTACAAGTTCCCAAAAACAAAAAACAGGTGTTTTACAATAAAATTGTGCTCTGCAGTGGCTAGTTTCCGCACAGTTCTCTGAAAAATTCAAATTGTTTCTAGATTTCTAAAATTTTGAAAAAATTTTTGAATCCTTTTTTTTTCAAAAAAAAAATCTAATACTCACCCGATAATTGTTCTCTCTATCGTTCACCGATCGCAGAATTTTTTGATTCTGAAAATTGAAATTTTAAAAAAATTTGAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATTTGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTTCTGCTATCTTTCATAGGAACCGAAATATATGCGTTCAAGTTGACAAGTGGGCGCTTGTCGGCTGAGGAGCTACGCGGGCGGCTAACTTTGAGCCAATTTATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATTACTGATAATCTGATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTTGAGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCAAGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCATCTAATGAAATATACTTGATAACCTGATAAAAATTTTATCAGTTGGCAATTTTTTGCTATCTTTCATAGCAACCGAGATAATTGAGCTCAAACCAACCCTCATGCTTTTCTGCTTGCTA</canonical>
            <polymorphic>ATAAAATATTGCTGATATTATGATAAATATTTTATCAGTTGACAGATTTTTGATATCTTTTACAGGAATCGAGATAATCAAGCTCAAAGTTGGCTGTTCGAGTGGGCTTCTAAGAGAGTAGTACTGTAATCACTGCAAAAACCAAAAACGATAAATTTACAAGTTCCCAAAAACAAAAAACAGGTGTTTTACAATAAAATTGTGCTCTGCAGTGGCTAGTTTCCGCACAGTTCTCTGAAAAATTCAAATTGTTTCTAGATTTCTAAAATTTTGAAAAAATTTTTGAATCCTTTTTTTTTCAAAAAAAAAATCTAATACTCACCCGATAATTGTTCTCTCTATCGTTCACCGATCGCAGAATTTTTTGATTCTGAAAATTGAAATTTTAAAAAAATTTGAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATYTGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTTCTGCTATCTTTCATAGGAACCGAAATATATGCGTTCAAGTTGACAAGTGGGCGCTTGTCGGCTGAGGAGCTACGCGGGCGGCTAACTTTGAGCCAATTTATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATTACTGATAATCTGATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTTGAGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCAAGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCATCTAATGAAATATACTTGATAACCTGATAAAAATTTTATCAGTTGGCAATTTTTTGCTATCTTTCATAGCAACCGAGATAATTGAGCTCAAACCAACCCTCATGCTTTTCTGCTTGCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>376 153 104 88 87 81 40 26 23 11 11</canonical_bands>
                <polymorphic_bands>480 153 88 87 81 40 26 23 11 11</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>153 148 88 76 61 50 44 43 40 40 32 32 32 31 31 20 17 16 12 11 11 6 6</canonical_bands>
                <polymorphic_bands>179 153 88 76 61 50 44 43 40 40 32 32 32 31 20 17 16 12 11 11 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATCCGTATTACCGCATAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAACTACAACAGCCTAGCA</pcr_primer_p2>
		<pcr_amplicon_size>619</pcr_amplicon_size>
		<canonical_amplicon>GAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATTTGTAAACTTATAAAATACTA</canonical_amplicon>
		<polymorphic_amplicon>GAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATYTGTAAACTTATAAAATACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30430</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>183987</contig_pos>
        <strand></strand>
        <context>tataaaacat[T/C]aytgataatc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACAT</left_flank>
        <right_flank>ACTGATAATCTGATAAATATTTTATCAATAGACAATTTTTTGATATCTTC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTGCTCTGCAGTGGCTAGTTTCCGCACAGTTCTCTGAAAAATTCAAATTGTTTCTAGATTTCTAAAATTTTGAAAAAATTTTTGAATCCTTTTTTTTTCAAAAAAAAAATCTAATACTCACCCGATAATTGTTCTCTCTATCGTTCACCGATCGCAGAATTTTTTGATTCTGAAAATTGAAATTTTAAAAAAATTTGAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATTTGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTTCTGCTATCTTTCATAGGAACCGAAATATATGCGTTCAAGTTGACAAGTGGGCGCTTGTCGGCTGAGGAGCTACGCGGGCGGCTAACTTTGAGCCAATTTATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATTACTGATAATCTGATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTTGAGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCAAGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCATCTAATGAAATATACTTGATAACCTGATAAAAATTTTATCAGTTGGCAATTTTTTGCTATCTTTCATAGCAACCGAGATAATTGAGCTCAAACCAACCCTCATGCTTTTCTGCTTGCTAGGCTGTTGTAGTTTTGTGCAGTTACACAGCTTTTTTGTCAGATAGTTCAAGCCTGGAATTTTCTTATTATTCTTTCTAGAATTAAATTTTTAAAATTACAGTAATATATCGATTTTGGAGATGGGACAATGTTAAAAGGAGGTGGTAGAGTGGCAGTGTCATCGAAGTATTCTGAAAATTGAAAAATTAAAAAATCTGG</canonical>
            <polymorphic>TTGTGCTCTGCAGTGGCTAGTTTCCGCACAGTTCTCTGAAAAATTCAAATTGTTTCTAGATTTCTAAAATTTTGAAAAAATTTTTGAATCCTTTTTTTTTCAAAAAAAAAATCTAATACTCACCCGATAATTGTTCTCTCTATCGTTCACCGATCGCAGAATTTTTTGATTCTGAAAATTGAAATTTTAAAAAAATTTGAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATTTGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTTCTGCTATCTTTCATAGGAACCGAAATATATGCGTTCAAGTTGACAAGTGGGCGCTTGTCGGCTGAGGAGCTACGCGGGCGGCTAACTTTGAGCCAATTTATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATYACTGATAATCTGATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTTGAGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCAAGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCATCTAATGAAATATACTTGATAACCTGATAAAAATTTTATCAGTTGGCAATTTTTTGCTATCTTTCATAGCAACCGAGATAATTGAGCTCAAACCAACCCTCATGCTTTTCTGCTTGCTAGGCTGTTGTAGTTTTGTGCAGTTACACAGCTTTTTTGTCAGATAGTTCAAGCCTGGAATTTTCTTATTATTCTTTCTAGAATTAAATTTTTAAAATTACAGTAATATATCGATTTTGGAGATGGGACAATGTTAAAAGGAGGTGGTAGAGTGGCAGTGTCATCGAAGTATTCTGAAAATTGAAAAATTAAAAAATCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATCCGTATTACCGCATAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAACTACAACAGCCTAGCA</pcr_primer_p2>
		<pcr_amplicon_size>619</pcr_amplicon_size>
		<canonical_amplicon>GAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATTTGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTTCTGCTATCTTTCATAGGAACCGAAATATATGCGTTCAAGTTGACAAGTGGGCGCTTGTCGGCTGAGGAGCTACGCGGGCGGCTAACTTTGAGCCAATTTATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATTACTGATAATCTGATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTTGAGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCAAGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCATCTAATGAAATATACTTGATAACCTGATAAAAATTTTATCAGTTGGCAATTTTTTGCTATCTTTCATAGCAACCGAGATAATTGAGCTCAAACCAACCCTCATGCTTTTCTGCTTGCTAGGCTGTTGTAGTTTTG</canonical_amplicon>
		<polymorphic_amplicon>GAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATTTGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTTCTGCTATCTTTCATAGGAACCGAAATATATGCGTTCAAGTTGACAAGTGGGCGCTTGTCGGCTGAGGAGCTACGCGGGCGGCTAACTTTGAGCCAATTTATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATYACTGATAATCTGATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTTGAGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCAAGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCATCTAATGAAATATACTTGATAACCTGATAAAAATTTTATCAGTTGGCAATTTTTTGCTATCTTTCATAGCAACCGAGATAATTGAGCTCAAACCAACCCTCATGCTTTTCTGCTTGCTAGGCTGTTGTAGTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30431</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>183989</contig_pos>
        <strand></strand>
        <context>taaaacatya[C/T]tgataatcts</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATTA</left_flank>
        <right_flank>TGATAATCTGATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGCTCTGCAGTGGCTAGTTTCCGCACAGTTCTCTGAAAAATTCAAATTGTTTCTAGATTTCTAAAATTTTGAAAAAATTTTTGAATCCTTTTTTTTTCAAAAAAAAAATCTAATACTCACCCGATAATTGTTCTCTCTATCGTTCACCGATCGCAGAATTTTTTGATTCTGAAAATTGAAATTTTAAAAAAATTTGAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATTTGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTTCTGCTATCTTTCATAGGAACCGAAATATATGCGTTCAAGTTGACAAGTGGGCGCTTGTCGGCTGAGGAGCTACGCGGGCGGCTAACTTTGAGCCAATTTATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATTACTGATAATCTGATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTTGAGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCAAGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCATCTAATGAAATATACTTGATAACCTGATAAAAATTTTATCAGTTGGCAATTTTTTGCTATCTTTCATAGCAACCGAGATAATTGAGCTCAAACCAACCCTCATGCTTTTCTGCTTGCTAGGCTGTTGTAGTTTTGTGCAGTTACACAGCTTTTTTGTCAGATAGTTCAAGCCTGGAATTTTCTTATTATTCTTTCTAGAATTAAATTTTTAAAATTACAGTAATATATCGATTTTGGAGATGGGACAATGTTAAAAGGAGGTGGTAGAGTGGCAGTGTCATCGAAGTATTCTGAAAATTGAAAAATTAAAAAATCTGGAA</canonical>
            <polymorphic>GTGCTCTGCAGTGGCTAGTTTCCGCACAGTTCTCTGAAAAATTCAAATTGTTTCTAGATTTCTAAAATTTTGAAAAAATTTTTGAATCCTTTTTTTTTCAAAAAAAAAATCTAATACTCACCCGATAATTGTTCTCTCTATCGTTCACCGATCGCAGAATTTTTTGATTCTGAAAATTGAAATTTTAAAAAAATTTGAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATTTGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTTCTGCTATCTTTCATAGGAACCGAAATATATGCGTTCAAGTTGACAAGTGGGCGCTTGTCGGCTGAGGAGCTACGCGGGCGGCTAACTTTGAGCCAATTTATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATTAYTGATAATCTGATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTTGAGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCAAGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCATCTAATGAAATATACTTGATAACCTGATAAAAATTTTATCAGTTGGCAATTTTTTGCTATCTTTCATAGCAACCGAGATAATTGAGCTCAAACCAACCCTCATGCTTTTCTGCTTGCTAGGCTGTTGTAGTTTTGTGCAGTTACACAGCTTTTTTGTCAGATAGTTCAAGCCTGGAATTTTCTTATTATTCTTTCTAGAATTAAATTTTTAAAATTACAGTAATATATCGATTTTGGAGATGGGACAATGTTAAAAGGAGGTGGTAGAGTGGCAGTGTCATCGAAGTATTCTGAAAATTGAAAAATTAAAAAATCTGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATCCGTATTACCGCATAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAACTACAACAGCCTAGCA</pcr_primer_p2>
		<pcr_amplicon_size>619</pcr_amplicon_size>
		<canonical_amplicon>GAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATTTGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTTCTGCTATCTTTCATAGGAACCGAAATATATGCGTTCAAGTTGACAAGTGGGCGCTTGTCGGCTGAGGAGCTACGCGGGCGGCTAACTTTGAGCCAATTTATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATTACTGATAATCTGATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTTGAGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCAAGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCATCTAATGAAATATACTTGATAACCTGATAAAAATTTTATCAGTTGGCAATTTTTTGCTATCTTTCATAGCAACCGAGATAATTGAGCTCAAACCAACCCTCATGCTTTTCTGCTTGCTAGGCTGTTGTAGTTTTG</canonical_amplicon>
		<polymorphic_amplicon>GAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATTTGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTTCTGCTATCTTTCATAGGAACCGAAATATATGCGTTCAAGTTGACAAGTGGGCGCTTGTCGGCTGAGGAGCTACGCGGGCGGCTAACTTTGAGCCAATTTATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATTAYTGATAATCTGATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTTGAGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCAAGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCATCTAATGAAATATACTTGATAACCTGATAAAAATTTTATCAGTTGGCAATTTTTTGCTATCTTTCATAGCAACCGAGATAATTGAGCTCAAACCAACCCTCATGCTTTTCTGCTTGCTAGGCTGTTGTAGTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30432</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>183999</contig_pos>
        <strand></strand>
        <context>ytgataatct[G/C]ataaatattt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATTACTGATAATCT</left_flank>
        <right_flank>ATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGGCTAGTTTCCGCACAGTTCTCTGAAAAATTCAAATTGTTTCTAGATTTCTAAAATTTTGAAAAAATTTTTGAATCCTTTTTTTTTCAAAAAAAAAATCTAATACTCACCCGATAATTGTTCTCTCTATCGTTCACCGATCGCAGAATTTTTTGATTCTGAAAATTGAAATTTTAAAAAAATTTGAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATTTGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTTCTGCTATCTTTCATAGGAACCGAAATATATGCGTTCAAGTTGACAAGTGGGCGCTTGTCGGCTGAGGAGCTACGCGGGCGGCTAACTTTGAGCCAATTTATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATTACTGATAATCTGATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTTGAGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCAAGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCATCTAATGAAATATACTTGATAACCTGATAAAAATTTTATCAGTTGGCAATTTTTTGCTATCTTTCATAGCAACCGAGATAATTGAGCTCAAACCAACCCTCATGCTTTTCTGCTTGCTAGGCTGTTGTAGTTTTGTGCAGTTACACAGCTTTTTTGTCAGATAGTTCAAGCCTGGAATTTTCTTATTATTCTTTCTAGAATTAAATTTTTAAAATTACAGTAATATATCGATTTTGGAGATGGGACAATGTTAAAAGGAGGTGGTAGAGTGGCAGTGTCATCGAAGTATTCTGAAAATTGAAAAATTAAAAAATCTGGAACTTCAGTCAA</canonical>
            <polymorphic>GTGGCTAGTTTCCGCACAGTTCTCTGAAAAATTCAAATTGTTTCTAGATTTCTAAAATTTTGAAAAAATTTTTGAATCCTTTTTTTTTCAAAAAAAAAATCTAATACTCACCCGATAATTGTTCTCTCTATCGTTCACCGATCGCAGAATTTTTTGATTCTGAAAATTGAAATTTTAAAAAAATTTGAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATTTGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTTCTGCTATCTTTCATAGGAACCGAAATATATGCGTTCAAGTTGACAAGTGGGCGCTTGTCGGCTGAGGAGCTACGCGGGCGGCTAACTTTGAGCCAATTTATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATTACTGATAATCTSATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTTGAGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCAAGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCATCTAATGAAATATACTTGATAACCTGATAAAAATTTTATCAGTTGGCAATTTTTTGCTATCTTTCATAGCAACCGAGATAATTGAGCTCAAACCAACCCTCATGCTTTTCTGCTTGCTAGGCTGTTGTAGTTTTGTGCAGTTACACAGCTTTTTTGTCAGATAGTTCAAGCCTGGAATTTTCTTATTATTCTTTCTAGAATTAAATTTTTAAAATTACAGTAATATATCGATTTTGGAGATGGGACAATGTTAAAAGGAGGTGGTAGAGTGGCAGTGTCATCGAAGTATTCTGAAAATTGAAAAATTAAAAAATCTGGAACTTCAGTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>338 330 136 133 38 25</canonical_bands>
                <polymorphic_bands>668 136 133 38 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATCCGTATTACCGCATAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAACTACAACAGCCTAGCA</pcr_primer_p2>
		<pcr_amplicon_size>619</pcr_amplicon_size>
		<canonical_amplicon>GAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATTTGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTTCTGCTATCTTTCATAGGAACCGAAATATATGCGTTCAAGTTGACAAGTGGGCGCTTGTCGGCTGAGGAGCTACGCGGGCGGCTAACTTTGAGCCAATTTATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATTACTGATAATCTGATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTTGAGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCAAGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCATCTAATGAAATATACTTGATAACCTGATAAAAATTTTATCAGTTGGCAATTTTTTGCTATCTTTCATAGCAACCGAGATAATTGAGCTCAAACCAACCCTCATGCTTTTCTGCTTGCTAGGCTGTTGTAGTTTTG</canonical_amplicon>
		<polymorphic_amplicon>GAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATTTGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTTCTGCTATCTTTCATAGGAACCGAAATATATGCGTTCAAGTTGACAAGTGGGCGCTTGTCGGCTGAGGAGCTACGCGGGCGGCTAACTTTGAGCCAATTTATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATTACTGATAATCTSATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTTGAGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCAAGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCATCTAATGAAATATACTTGATAACCTGATAAAAATTTTATCAGTTGGCAATTTTTTGCTATCTTTCATAGCAACCGAGATAATTGAGCTCAAACCAACCCTCATGCTTTTCTGCTTGCTAGGCTGTTGTAGTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30433</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>184069</contig_pos>
        <strand></strand>
        <context>gctcaaagtt[G/T]aGAAGGCAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTT</left_flank>
        <right_flank>AGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAATCCTTTTTTTTTCAAAAAAAAAATCTAATACTCACCCGATAATTGTTCTCTCTATCGTTCACCGATCGCAGAATTTTTTGATTCTGAAAATTGAAATTTTAAAAAAATTTGAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATTTGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTTCTGCTATCTTTCATAGGAACCGAAATATATGCGTTCAAGTTGACAAGTGGGCGCTTGTCGGCTGAGGAGCTACGCGGGCGGCTAACTTTGAGCCAATTTATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATTACTGATAATCTGATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTTGAGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCAAGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCATCTAATGAAATATACTTGATAACCTGATAAAAATTTTATCAGTTGGCAATTTTTTGCTATCTTTCATAGCAACCGAGATAATTGAGCTCAAACCAACCCTCATGCTTTTCTGCTTGCTAGGCTGTTGTAGTTTTGTGCAGTTACACAGCTTTTTTGTCAGATAGTTCAAGCCTGGAATTTTCTTATTATTCTTTCTAGAATTAAATTTTTAAAATTACAGTAATATATCGATTTTGGAGATGGGACAATGTTAAAAGGAGGTGGTAGAGTGGCAGTGTCATCGAAGTATTCTGAAAATTGAAAAATTAAAAAATCTGGAACTTCAGTCAAACCCAAAAACAATCGACTCCTGGCGAATTTCCATTCGATATCAGCCTGATCCGAAATGTATTGATATGAA</canonical>
            <polymorphic>TTTGAATCCTTTTTTTTTCAAAAAAAAAATCTAATACTCACCCGATAATTGTTCTCTCTATCGTTCACCGATCGCAGAATTTTTTGATTCTGAAAATTGAAATTTTAAAAAAATTTGAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATTTGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTTCTGCTATCTTTCATAGGAACCGAAATATATGCGTTCAAGTTGACAAGTGGGCGCTTGTCGGCTGAGGAGCTACGCGGGCGGCTAACTTTGAGCCAATTTATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATTACTGATAATCTGATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTTKAGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCAAGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCATCTAATGAAATATACTTGATAACCTGATAAAAATTTTATCAGTTGGCAATTTTTTGCTATCTTTCATAGCAACCGAGATAATTGAGCTCAAACCAACCCTCATGCTTTTCTGCTTGCTAGGCTGTTGTAGTTTTGTGCAGTTACACAGCTTTTTTGTCAGATAGTTCAAGCCTGGAATTTTCTTATTATTCTTTCTAGAATTAAATTTTTAAAATTACAGTAATATATCGATTTTGGAGATGGGACAATGTTAAAAGGAGGTGGTAGAGTGGCAGTGTCATCGAAGTATTCTGAAAATTGAAAAATTAAAAAATCTGGAACTTCAGTCAAACCCAAAAACAATCGACTCCTGGCGAATTTCCATTCGATATCAGCCTGATCCGAAATGTATTGATATGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATCCGTATTACCGCATAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAACTACAACAGCCTAGCA</pcr_primer_p2>
		<pcr_amplicon_size>619</pcr_amplicon_size>
		<canonical_amplicon>GAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATTTGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTTCTGCTATCTTTCATAGGAACCGAAATATATGCGTTCAAGTTGACAAGTGGGCGCTTGTCGGCTGAGGAGCTACGCGGGCGGCTAACTTTGAGCCAATTTATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATTACTGATAATCTGATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTTGAGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCAAGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCATCTAATGAAATATACTTGATAACCTGATAAAAATTTTATCAGTTGGCAATTTTTTGCTATCTTTCATAGCAACCGAGATAATTGAGCTCAAACCAACCCTCATGCTTTTCTGCTTGCTAGGCTGTTGTAGTTTTG</canonical_amplicon>
		<polymorphic_amplicon>GAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATTTGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTTCTGCTATCTTTCATAGGAACCGAAATATATGCGTTCAAGTTGACAAGTGGGCGCTTGTCGGCTGAGGAGCTACGCGGGCGGCTAACTTTGAGCCAATTTATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATTACTGATAATCTGATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTTKAGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCAAGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCATCTAATGAAATATACTTGATAACCTGATAAAAATTTTATCAGTTGGCAATTTTTTGCTATCTTTCATAGCAACCGAGATAATTGAGCTCAAACCAACCCTCATGCTTTTCTGCTTGCTAGGCTGTTGTAGTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30434</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>184125</contig_pos>
        <strand></strand>
        <context>ttgaacatca[A/T]ggcaatttat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCA</left_flank>
        <right_flank>GGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCATCTAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTATCGTTCACCGATCGCAGAATTTTTTGATTCTGAAAATTGAAATTTTAAAAAAATTTGAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATTTGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTTCTGCTATCTTTCATAGGAACCGAAATATATGCGTTCAAGTTGACAAGTGGGCGCTTGTCGGCTGAGGAGCTACGCGGGCGGCTAACTTTGAGCCAATTTATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATTACTGATAATCTGATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTTGAGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCAAGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCATCTAATGAAATATACTTGATAACCTGATAAAAATTTTATCAGTTGGCAATTTTTTGCTATCTTTCATAGCAACCGAGATAATTGAGCTCAAACCAACCCTCATGCTTTTCTGCTTGCTAGGCTGTTGTAGTTTTGTGCAGTTACACAGCTTTTTTGTCAGATAGTTCAAGCCTGGAATTTTCTTATTATTCTTTCTAGAATTAAATTTTTAAAATTACAGTAATATATCGATTTTGGAGATGGGACAATGTTAAAAGGAGGTGGTAGAGTGGCAGTGTCATCGAAGTATTCTGAAAATTGAAAAATTAAAAAATCTGGAACTTCAGTCAAACCCAAAAACAATCGACTCCTGGCGAATTTCCATTCGATATCAGCCTGATCCGAAATGTATTGATATGAATTGCTCATCATAGCAATTAGCATATTTAATAGAACTATAATTGAACAACAACAATA</canonical>
            <polymorphic>TCTATCGTTCACCGATCGCAGAATTTTTTGATTCTGAAAATTGAAATTTTAAAAAAATTTGAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATTTGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTTCTGCTATCTTTCATAGGAACCGAAATATATGCGTTCAAGTTGACAAGTGGGCGCTTGTCGGCTGAGGAGCTACGCGGGCGGCTAACTTTGAGCCAATTTATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATTACTGATAATCTGATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTTGAGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCAWGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCATCTAATGAAATATACTTGATAACCTGATAAAAATTTTATCAGTTGGCAATTTTTTGCTATCTTTCATAGCAACCGAGATAATTGAGCTCAAACCAACCCTCATGCTTTTCTGCTTGCTAGGCTGTTGTAGTTTTGTGCAGTTACACAGCTTTTTTGTCAGATAGTTCAAGCCTGGAATTTTCTTATTATTCTTTCTAGAATTAAATTTTTAAAATTACAGTAATATATCGATTTTGGAGATGGGACAATGTTAAAAGGAGGTGGTAGAGTGGCAGTGTCATCGAAGTATTCTGAAAATTGAAAAATTAAAAAATCTGGAACTTCAGTCAAACCCAAAAACAATCGACTCCTGGCGAATTTCCATTCGATATCAGCCTGATCCGAAATGTATTGATATGAATTGCTCATCATAGCAATTAGCATATTTAATAGAACTATAATTGAACAACAACAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATCCGTATTACCGCATAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAACTACAACAGCCTAGCA</pcr_primer_p2>
		<pcr_amplicon_size>619</pcr_amplicon_size>
		<canonical_amplicon>GAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATTTGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTTCTGCTATCTTTCATAGGAACCGAAATATATGCGTTCAAGTTGACAAGTGGGCGCTTGTCGGCTGAGGAGCTACGCGGGCGGCTAACTTTGAGCCAATTTATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATTACTGATAATCTGATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTTGAGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCAAGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCATCTAATGAAATATACTTGATAACCTGATAAAAATTTTATCAGTTGGCAATTTTTTGCTATCTTTCATAGCAACCGAGATAATTGAGCTCAAACCAACCCTCATGCTTTTCTGCTTGCTAGGCTGTTGTAGTTTTG</canonical_amplicon>
		<polymorphic_amplicon>GAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATTTGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTTCTGCTATCTTTCATAGGAACCGAAATATATGCGTTCAAGTTGACAAGTGGGCGCTTGTCGGCTGAGGAGCTACGCGGGCGGCTAACTTTGAGCCAATTTATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATTACTGATAATCTGATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTTGAGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCAWGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCATCTAATGAAATATACTTGATAACCTGATAAAAATTTTATCAGTTGGCAATTTTTTGCTATCTTTCATAGCAACCGAGATAATTGAGCTCAAACCAACCCTCATGCTTTTCTGCTTGCTAGGCTGTTGTAGTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30435</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>184170</contig_pos>
        <strand></strand>
        <context>aaatttgtca[T/A]ctaatgaaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CATCAAGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCA</left_flank>
        <right_flank>CTAATGAAATATACTTGATAACCTGATAAAAATTTTATCAGTTGGCAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTAAAAAAATTTGAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATTTGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTTCTGCTATCTTTCATAGGAACCGAAATATATGCGTTCAAGTTGACAAGTGGGCGCTTGTCGGCTGAGGAGCTACGCGGGCGGCTAACTTTGAGCCAATTTATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATTACTGATAATCTGATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTTGAGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCAAGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCATCTAATGAAATATACTTGATAACCTGATAAAAATTTTATCAGTTGGCAATTTTTTGCTATCTTTCATAGCAACCGAGATAATTGAGCTCAAACCAACCCTCATGCTTTTCTGCTTGCTAGGCTGTTGTAGTTTTGTGCAGTTACACAGCTTTTTTGTCAGATAGTTCAAGCCTGGAATTTTCTTATTATTCTTTCTAGAATTAAATTTTTAAAATTACAGTAATATATCGATTTTGGAGATGGGACAATGTTAAAAGGAGGTGGTAGAGTGGCAGTGTCATCGAAGTATTCTGAAAATTGAAAAATTAAAAAATCTGGAACTTCAGTCAAACCCAAAAACAATCGACTCCTGGCGAATTTCCATTCGATATCAGCCTGATCCGAAATGTATTGATATGAATTGCTCATCATAGCAATTAGCATATTTAATAGAACTATAATTGAACAACAACAATAACTTCCAAATATCGTTTTCCCCGTCCATTCGGACAAAAAATGGTC</canonical>
            <polymorphic>ATTTTAAAAAAATTTGAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATTTGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTTCTGCTATCTTTCATAGGAACCGAAATATATGCGTTCAAGTTGACAAGTGGGCGCTTGTCGGCTGAGGAGCTACGCGGGCGGCTAACTTTGAGCCAATTTATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATTACTGATAATCTGATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTTGAGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCAAGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCAWCTAATGAAATATACTTGATAACCTGATAAAAATTTTATCAGTTGGCAATTTTTTGCTATCTTTCATAGCAACCGAGATAATTGAGCTCAAACCAACCCTCATGCTTTTCTGCTTGCTAGGCTGTTGTAGTTTTGTGCAGTTACACAGCTTTTTTGTCAGATAGTTCAAGCCTGGAATTTTCTTATTATTCTTTCTAGAATTAAATTTTTAAAATTACAGTAATATATCGATTTTGGAGATGGGACAATGTTAAAAGGAGGTGGTAGAGTGGCAGTGTCATCGAAGTATTCTGAAAATTGAAAAATTAAAAAATCTGGAACTTCAGTCAAACCCAAAAACAATCGACTCCTGGCGAATTTCCATTCGATATCAGCCTGATCCGAAATGTATTGATATGAATTGCTCATCATAGCAATTAGCATATTTAATAGAACTATAATTGAACAACAACAATAACTTCCAAATATCGTTTTCCCCGTCCATTCGGACAAAAAATGGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATCCGTATTACCGCATAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAACTACAACAGCCTAGCA</pcr_primer_p2>
		<pcr_amplicon_size>619</pcr_amplicon_size>
		<canonical_amplicon>GAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATTTGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTTCTGCTATCTTTCATAGGAACCGAAATATATGCGTTCAAGTTGACAAGTGGGCGCTTGTCGGCTGAGGAGCTACGCGGGCGGCTAACTTTGAGCCAATTTATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATTACTGATAATCTGATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTTGAGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCAAGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCATCTAATGAAATATACTTGATAACCTGATAAAAATTTTATCAGTTGGCAATTTTTTGCTATCTTTCATAGCAACCGAGATAATTGAGCTCAAACCAACCCTCATGCTTTTCTGCTTGCTAGGCTGTTGTAGTTTTG</canonical_amplicon>
		<polymorphic_amplicon>GAATCCGTATTACCGCATAAGCAGACCGTATAAGCTCTAGCACAAGCCCAACCGTCAATTTTGAGCTAAATTATCTCGGTTTTTTTAAAATATATCAAAAATTTGTAAACTTATAAAATACTACTGATAATATGATAAACAGTAGACTACTTTCTGCTATCTTTCATAGGAACCGAAATATATGCGTTCAAGTTGACAAGTGGGCGCTTGTCGGCTGAGGAGCTACGCGGGCGGCTAACTTTGAGCCAATTTATCTCGGTTCTTTTAAAAGATATCGAAAGCTTGTTAACCTATAAAACATTACTGATAATCTGATAAATATTTTATCAATAGACAATTTTTTGATATCTTCCACAGGAACGGAGATAATTGAGCTCAAAGTTGAGAAGGCAGCGCTTGCCGGCTGAGCTACGAGGTGGCTGCCGAGCTTTGAACATCAAGGCAATTTATCTCGGCTCCTGTAGATGGTATCAAAAATTTGTCAWCTAATGAAATATACTTGATAACCTGATAAAAATTTTATCAGTTGGCAATTTTTTGCTATCTTTCATAGCAACCGAGATAATTGAGCTCAAACCAACCCTCATGCTTTTCTGCTTGCTAGGCTGTTGTAGTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30436</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>202355</contig_pos>
        <strand></strand>
        <context>tatatctcat[G/T]gaccggtact</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTAAAAATACCAAAAATCAGCTAAAAAATTCGTTTTTTCTATATCTCAT</left_flank>
        <right_flank>GACCGGTACTGTAGGTATTTAAAGTGGGGGGAGATTTGAGTGATTTTGAC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCAGATTTTTGAGCTTTTTAAGCCAAAGTTTCCAGAATTTCAGAGTTTTCTAGCTTAAAATTTTTAAAATTTTCAGATTTCTCGGGTCATAGATATCCATTTTTATGAATTTTCAAGTCGAAAATTTCAGATTTTTGAGTTTTTCAGACCGTAATTTTGCGATTTTCTGATTTTTTGACGGACAAAAATCTCGATTTTTTAGGTATTTTCAGTCATTTTTCAGCAAAAAAAAGCGAGAATTTCGAAAAACCAGCATTTTTTTCAGAATTAAAAAAAAAGATTTTAAATTTTCAGGGGTTTTGTTTAGTTTTTCGTGAAAAATGGGTCTATTGGAAATCTAGGAATTTTCAAAAAATTCTATAAATGCAAAATTTTCAATTTAGGTCAGTTTTACATCCTTCAAAGTTTTCAAAGTGATTGGAAACTTGAAAATCGAGTTCTAGACTCTTAAAAATACCAAAAATCAGCTAAAAAATTCGTTTTTTCTATATCTCATGGACCGGTACTGTAGGTATTTAAAGTGGGGGGAGATTTGAGTGATTTTGACAATAGAAAATTGAAAAAAATTATGCAAAATTACTGGATTCGTAGGGGGGAAGGGGAAAAAAGCACACAAGATTGATATGTACCCGAAAAATATTTTTTAAAAATGCATTTAAAAATTGTATATAAAGTGGGCGGAGCCTCCTGGATTCTAACGATGCTTCGGCACGACACGTGGATTGTTGATGAGAAAATGGAGCAACTGATGGTTGGGCATCGCCGGAATGCTGCCCGAACAGAATAGTGTCGGCGAGAAGATCGTCGCCAGGTTCTCAACGGTCATTTTGTTTTTGGAACTGTGATCGGCGACCTGGAAATGGGGGAAAACTCGCTTTTTAGGACTGTTTGGGGCTTTTTGGAGCTTTTTAGAGCCTTTTAAGGAGCTGTTTAGCAGCTTTTTAGGACTTTTTAGAGCTTTTTGGGAGCTTTTAGGAGCTGTTTAGGAGCTTTTCAG</canonical>
            <polymorphic>TTTTCAGATTTTTGAGCTTTTTAAGCCAAAGTTTCCAGAATTTCAGAGTTTTCTAGCTTAAAATTTTTAAAATTTTCAGATTTCTCGGGTCATAGATATCCATTTTTATGAATTTTCAAGTCGAAAATTTCAGATTTTTGAGTTTTTCAGACCGTAATTTTGCGATTTTCTGATTTTTTGACGGACAAAAATCTCGATTTTTTAGGTATTTTCAGTCATTTTTCAGCAAAAAAAAGCGAGAATTTCGAAAAACCAGCATTTTTTTCAGAATTAAAAAAAAAGATTTTAAATTTTCAGGGGTTTTGTTTAGTTTTTCGTGAAAAATGGGTCTATTGGAAATCTAGGAATTTTCAAAAAATTCTATAAATGCAAAATTTTCAATTTAGGTCAGTTTTACATCCTTCAAAGTTTTCAAAGTGATTGGAAACTTGAAAATCGAGTTCTAGACTCTTAAAAATACCAAAAATCAGCTAAAAAATTCGTTTTTTCTATATCTCATKGACCGGTACTGTAGGTATTTAAAGTGGGGGGAGATTTGAGTGATTTTGACAATAGAAAATTGAAAAAAATTATGCAAAATTACTGGATTCGTAGGGGGGAAGGGGAAAAAAGCACACAAGATTGATATGTACCCGAAAAATATTTTTTAAAAATGCATTTAAAAATTGTATATAAAGTGGGCGGAGCCTCCTGGATTCTAACGATGCTTCGGCACGACACGTGGATTGTTGATGAGAAAATGGAGCAACTGATGGTTGGGCATCGCCGGAATGCTGCCCGAACAGAATAGTGTCGGCGAGAAGATCGTCGCCAGGTTCTCAACGGTCATTTTGTTTTTGGAACTGTGATCGGCGACCTGGAAATGGGGGAAAACTCGCTTTTTAGGACTGTTTGGGGCTTTTTGGAGCTTTTTAGAGCCTTTTAAGGAGCTGTTTAGCAGCTTTTTAGGACTTTTTAGAGCTTTTTGGGAGCTTTTAGGAGCTGTTTAGGAGCTTTTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCGTGAAAAATGGGTCTAT</pcr_primer_p1>
		<pcr_primer_p2>TCAATTTTCTATTGTCAAAATCAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTCGTGAAAAATGGGTCTATTGGAAATCTAGGAATTTTCAAAAAATTCTATAAATGCAAAATTTTCAATTTAGGTCAGTTTTACATCCTTCAAAGTTTTCAAAGTGATTGGAAACTTGAAAATCGAGTTCTAGACTCTTAAAAATACCAAAAATCAGCTAAAAAATTCGTTTTTTCTATATCTCATGGACCGGTACTGTAGGTATTTAAAGTGGGGGGAGATTTGAGTGATTTTGACAATAGAAAATTGA</canonical_amplicon>
		<polymorphic_amplicon>TTTCGTGAAAAATGGGTCTATTGGAAATCTAGGAATTTTCAAAAAATTCTATAAATGCAAAATTTTCAATTTAGGTCAGTTTTACATCCTTCAAAGTTTTCAAAGTGATTGGAAACTTGAAAATCGAGTTCTAGACTCTTAAAAATACCAAAAATCAGCTAAAAAATTCGTTTTTTCTATATCTCATKGACCGGTACTGTAGGTATTTAAAGTGGGGGGAGATTTGAGTGATTTTGACAATAGAAAATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30437</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>202367</contig_pos>
        <strand></strand>
        <context>accggtactg[T/A]AGGTATTTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAAAATCAGCTAAAAAATTCGTTTTTTCTATATCTCATGGACCGGTACTG</left_flank>
        <right_flank>AGGTATTTAAAGTGGGGGGAGATTTGAGTGATTTTGACAATAGAAAATTG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGCTTTTTAAGCCAAAGTTTCCAGAATTTCAGAGTTTTCTAGCTTAAAATTTTTAAAATTTTCAGATTTCTCGGGTCATAGATATCCATTTTTATGAATTTTCAAGTCGAAAATTTCAGATTTTTGAGTTTTTCAGACCGTAATTTTGCGATTTTCTGATTTTTTGACGGACAAAAATCTCGATTTTTTAGGTATTTTCAGTCATTTTTCAGCAAAAAAAAGCGAGAATTTCGAAAAACCAGCATTTTTTTCAGAATTAAAAAAAAAGATTTTAAATTTTCAGGGGTTTTGTTTAGTTTTTCGTGAAAAATGGGTCTATTGGAAATCTAGGAATTTTCAAAAAATTCTATAAATGCAAAATTTTCAATTTAGGTCAGTTTTACATCCTTCAAAGTTTTCAAAGTGATTGGAAACTTGAAAATCGAGTTCTAGACTCTTAAAAATACCAAAAATCAGCTAAAAAATTCGTTTTTTCTATATCTCATGGACCGGTACTGTAGGTATTTAAAGTGGGGGGAGATTTGAGTGATTTTGACAATAGAAAATTGAAAAAAATTATGCAAAATTACTGGATTCGTAGGGGGGAAGGGGAAAAAAGCACACAAGATTGATATGTACCCGAAAAATATTTTTTAAAAATGCATTTAAAAATTGTATATAAAGTGGGCGGAGCCTCCTGGATTCTAACGATGCTTCGGCACGACACGTGGATTGTTGATGAGAAAATGGAGCAACTGATGGTTGGGCATCGCCGGAATGCTGCCCGAACAGAATAGTGTCGGCGAGAAGATCGTCGCCAGGTTCTCAACGGTCATTTTGTTTTTGGAACTGTGATCGGCGACCTGGAAATGGGGGAAAACTCGCTTTTTAGGACTGTTTGGGGCTTTTTGGAGCTTTTTAGAGCCTTTTAAGGAGCTGTTTAGCAGCTTTTTAGGACTTTTTAGAGCTTTTTGGGAGCTTTTAGGAGCTGTTTAGGAGCTTTTCAGGACATTTTATGG</canonical>
            <polymorphic>TGAGCTTTTTAAGCCAAAGTTTCCAGAATTTCAGAGTTTTCTAGCTTAAAATTTTTAAAATTTTCAGATTTCTCGGGTCATAGATATCCATTTTTATGAATTTTCAAGTCGAAAATTTCAGATTTTTGAGTTTTTCAGACCGTAATTTTGCGATTTTCTGATTTTTTGACGGACAAAAATCTCGATTTTTTAGGTATTTTCAGTCATTTTTCAGCAAAAAAAAGCGAGAATTTCGAAAAACCAGCATTTTTTTCAGAATTAAAAAAAAAGATTTTAAATTTTCAGGGGTTTTGTTTAGTTTTTCGTGAAAAATGGGTCTATTGGAAATCTAGGAATTTTCAAAAAATTCTATAAATGCAAAATTTTCAATTTAGGTCAGTTTTACATCCTTCAAAGTTTTCAAAGTGATTGGAAACTTGAAAATCGAGTTCTAGACTCTTAAAAATACCAAAAATCAGCTAAAAAATTCGTTTTTTCTATATCTCATGGACCGGTACTGWAGGTATTTAAAGTGGGGGGAGATTTGAGTGATTTTGACAATAGAAAATTGAAAAAAATTATGCAAAATTACTGGATTCGTAGGGGGGAAGGGGAAAAAAGCACACAAGATTGATATGTACCCGAAAAATATTTTTTAAAAATGCATTTAAAAATTGTATATAAAGTGGGCGGAGCCTCCTGGATTCTAACGATGCTTCGGCACGACACGTGGATTGTTGATGAGAAAATGGAGCAACTGATGGTTGGGCATCGCCGGAATGCTGCCCGAACAGAATAGTGTCGGCGAGAAGATCGTCGCCAGGTTCTCAACGGTCATTTTGTTTTTGGAACTGTGATCGGCGACCTGGAAATGGGGGAAAACTCGCTTTTTAGGACTGTTTGGGGCTTTTTGGAGCTTTTTAGAGCCTTTTAAGGAGCTGTTTAGCAGCTTTTTAGGACTTTTTAGAGCTTTTTGGGAGCTTTTAGGAGCTGTTTAGGAGCTTTTCAGGACATTTTATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>357 314 141 123 45 20</canonical_bands>
                <polymorphic_bands>671 141 123 45 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCGTGAAAAATGGGTCTAT</pcr_primer_p1>
		<pcr_primer_p2>CCCTACGAATCCAGTAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>TTTCGTGAAAAATGGGTCTATTGGAAATCTAGGAATTTTCAAAAAATTCTATAAATGCAAAATTTTCAATTTAGGTCAGTTTTACATCCTTCAAAGTTTTCAAAGTGATTGGAAACTTGAAAATCGAGTTCTAGACTCTTAAAAATACCAAAAATCAGCTAAAAAATTCGTTTTTTCTATATCTCATGGACCGGTACTGTAGGTATTTAAAGTGGGGGGAGATTTGAGTGATTTTGACAATAGAAAATTGAAAAAAATTATGCAAAATTACTGGATTCGTAGGG</canonical_amplicon>
		<polymorphic_amplicon>TTTCGTGAAAAATGGGTCTATTGGAAATCTAGGAATTTTCAAAAAATTCTATAAATGCAAAATTTTCAATTTAGGTCAGTTTTACATCCTTCAAAGTTTTCAAAGTGATTGGAAACTTGAAAATCGAGTTCTAGACTCTTAAAAATACCAAAAATCAGCTAAAAAATTCGTTTTTTCTATATCTCATGGACCGGTACTGWAGGTATTTAAAGTGGGGGGAGATTTGAGTGATTTTGACAATAGAAAATTGAAAAAAATTATGCAAAATTACTGGATTCGTAGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30438</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>202723</contig_pos>
        <strand>+</strand>
        <context>TGGAAAYGGG[A/G]GAAAACTCGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCAACGGTCATTTTGTTTTTGGAACTGTGATCGGCGACCTGGAAATGGG</left_flank>
        <right_flank>GAAAACTCGCTTTTTAGGACTGTTTGGGGCTTTTTGGAGCTTTTTAGAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAAAATTTTCAATTTAGGTCAGTTTTACATCCTTCAAAGTTTTCAAAGTGATTGGAAACTTGAAAATCGAGTTCTAGACTCTTAAAAATACCAAAAATCAGCTAAAAAATTCGTTTTTTCTATATCTCATGGACCGGTACTGTAGGTATTTAAAGTGGGGGGAGATTTGAGTGATTTTGACAATAGAAAATTGAAAAAAATTATGCAAAATTACTGGATTCGTAGGGGGGAAGGGGAAAAAAGCACACAAGATTGATATGTACCCGAAAAATATTTTTTAAAAATGCATTTAAAAATTGTATATAAAGTGGGCGGAGCCTCCTGGATTCTAACGATGCTTCGGCACGACACGTGGATTGTTGATGAGAAAATGGAGCAACTGATGGTTGGGCATCGCCGGAATGCTGCCCGAACAGAATAGTGTCGGCGAGAAGATCGTCGCCAGGTTCTCAACGGTCATTTTGTTTTTGGAACTGTGATCGGCGACCTGGAAATGGGGGAAAACTCGCTTTTTAGGACTGTTTGGGGCTTTTTGGAGCTTTTTAGAGCCTTTTAAGGAGCTGTTTAGCAGCTTTTTAGGACTTTTTAGAGCTTTTTGGGAGCTTTTAGGAGCTGTTTAGGAGCTTTTCAGGACATTTTATGGCTTTTTAGACAATTTTTTGAGCTTCTAAGAAACTTTTTTGGAGCTTTCAAGAGCTTTTTTGGGCCTTTTTAGGACTATTCAGGACTTTTTCGAACATTTAGGAGTTTTTTAGGAGCTCTTCAGTACTTTATAGGGTCTTTTAGGTGTTCTAGGACCTTTTTAAGACTTTTTAGGAGCTTTTCAGGACTTCTTAGAAGTTTTTTAGGATTTTTTAGGACTAAAAATAGCCTTGAATAGTCTGAAATTAGTATAAAATGGCTAAAAATAGACCGAAAATTGGATTTGTAGGCCTATTTCAGGCCTATCTTGCCCCCATTTTACCTTCTTCAAATGCGCCAAAACCGCTCCAAGCGTGA</canonical>
            <polymorphic>GCAAAATTTTCAATTTAGGTCAGTTTTACATCCTTCAAAGTTTTCAAAGTGATTGGAAACTTGAAAATCGAGTTCTAGACTCTTAAAAATACCAAAAATCAGCTAAAAAATTCGTTTTTTCTATATCTCATGGACCGGTACTGTAGGTATTTAAAGTGGGGGGAGATTTGAGTGATTTTGACAATAGAAAATTGAAAAAAATTATGCAAAATTACTGGATTCGTAGGGGGGAAGGGGAAAAAAGCACACAAGATTGATATGTACCCGAAAAATATTTTTTAAAAATGCATTTAAAAATTGTATATAAAGTGGGCGGAGCCTCCTGGATTCTAACGATGCTTCGGCACGACACGTGGATTGTTGATGAGAAAATGGAGCAACTGATGGTTGGGCATCGCCGGAATGCTGCCCGAACAGAATAGTGTCGGCGAGAAGATCGTCGCCAGGTTCTCAACGGTCATTTTGTTTTTGGAACTGTGATCGGCGACCTGGAAATGGGRGAAAACTCGCTTTTTAGGACTGTTTGGGGCTTTTTGGAGCTTTTTAGAGCCTTTTAAGGAGCTGTTTAGCAGCTTTTTAGGACTTTTTAGAGCTTTTTGGGAGCTTTTAGGAGCTGTTTAGGAGCTTTTCAGGACATTTTATGGCTTTTTAGACAATTTTTTGAGCTTCTAAGAAACTTTTTTGGAGCTTTCAAGAGCTTTTTTGGGCCTTTTTAGGACTATTCAGGACTTTTTCGAACATTTAGGAGTTTTTTAGGAGCTCTTCAGTACTTTATAGGGTCTTTTAGGTGTTCTAGGACCTTTTTAAGACTTTTTAGGAGCTTTTCAGGACTTCTTAGAAGTTTTTTAGGATTTTTTAGGACTAAAAATAGCCTTGAATAGTCTGAAATTAGTATAAAATGGCTAAAAATAGACCGAAAATTGGATTTGTAGGCCTATTTCAGGCCTATCTTGCCCCCATTTTACCTTCTTCAAATGCGCCAAAACCGCTCCAAGCGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAACGGTCATTTTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTATTCAAGGCTATTTTTAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>432</pcr_amplicon_size>
		<canonical_amplicon>TCAACGGTCATTTTGTTTTTGGAACTGTGATCGGCGACCTGGAAATGGGGGAAAACTCGCTTTTTAGGACTGTTTGGGGCTTTTTGGAGCTTTTTAGAGCCTTTTAAGGAGCTGTTTAGCAGCTTTTTAGGACTTTTTAGAGCTTTTTGGGAGCTTTTAGGAGCTGTTTAGGAGCTTTTCAGGACATTTTATGGCTTTTTAGACAATTTTTTGAGCTTCTAAGAAACTTTTTTGGAGCTTTCAAGAGCTTTTTTGGGCCTTTTTAGGACTATTCAGGACTTTTTCGAACATTTAGGAGTTTTTTAGGAGCTCTTCAGTACTTTATAGGGTCTTTTAGGTGTTCTAGGACCTTTTTAAGACTTTTTAGGAGCTTTTCAGGACTTCTTAGAAGTTTTTTAGGATTTTTTAGGACTAAAAATAGCCTTGAATAGT</canonical_amplicon>
		<polymorphic_amplicon>TCAACGGTCATTTTGTTTTTGGAACTGTGATCGGCGACCTGGAAATGGGRGAAAACTCGCTTTTTAGGACTGTTTGGGGCTTTTTGGAGCTTTTTAGAGCCTTTTAAGGAGCTGTTTAGCAGCTTTTTAGGACTTTTTAGAGCTTTTTGGGAGCTTTTAGGAGCTGTTTAGGAGCTTTTCAGGACATTTTATGGCTTTTTAGACAATTTTTTGAGCTTCTAAGAAACTTTTTTGGAGCTTTCAAGAGCTTTTTTGGGCCTTTTTAGGACTATTCAGGACTTTTTCGAACATTTAGGAGTTTTTTAGGAGCTCTTCAGTACTTTATAGGGTCTTTTAGGTGTTCTAGGACCTTTTTAAGACTTTTTAGGAGCTTTTCAGGACTTCTTAGAAGTTTTTTAGGATTTTTTAGGACTAAAAATAGCCTTGAATAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30439</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>202808</contig_pos>
        <strand></strand>
        <context>ttttaggact[T/G]tttrgrgctt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TGGAGCTTTTTAGAGCCTTTTAAGGAGCTGTTTAGCAGCTTTTTAGGACT</left_flank>
        <right_flank>TTTAGAGCTTTTTGGGAGCTTTTAGGAGCTGTTTAGGAGCTTTTCAGGAC</right_flank>
        <qual_score>33</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATACCAAAAATCAGCTAAAAAATTCGTTTTTTCTATATCTCATGGACCGGTACTGTAGGTATTTAAAGTGGGGGGAGATTTGAGTGATTTTGACAATAGAAAATTGAAAAAAATTATGCAAAATTACTGGATTCGTAGGGGGGAAGGGGAAAAAAGCACACAAGATTGATATGTACCCGAAAAATATTTTTTAAAAATGCATTTAAAAATTGTATATAAAGTGGGCGGAGCCTCCTGGATTCTAACGATGCTTCGGCACGACACGTGGATTGTTGATGAGAAAATGGAGCAACTGATGGTTGGGCATCGCCGGAATGCTGCCCGAACAGAATAGTGTCGGCGAGAAGATCGTCGCCAGGTTCTCAACGGTCATTTTGTTTTTGGAACTGTGATCGGCGACCTGGAAATGGGGGAAAACTCGCTTTTTAGGACTGTTTGGGGCTTTTTGGAGCTTTTTAGAGCCTTTTAAGGAGCTGTTTAGCAGCTTTTTAGGACTTTTTAGAGCTTTTTGGGAGCTTTTAGGAGCTGTTTAGGAGCTTTTCAGGACATTTTATGGCTTTTTAGACAATTTTTTGAGCTTCTAAGAAACTTTTTTGGAGCTTTCAAGAGCTTTTTTGGGCCTTTTTAGGACTATTCAGGACTTTTTCGAACATTTAGGAGTTTTTTAGGAGCTCTTCAGTACTTTATAGGGTCTTTTAGGTGTTCTAGGACCTTTTTAAGACTTTTTAGGAGCTTTTCAGGACTTCTTAGAAGTTTTTTAGGATTTTTTAGGACTAAAAATAGCCTTGAATAGTCTGAAATTAGTATAAAATGGCTAAAAATAGACCGAAAATTGGATTTGTAGGCCTATTTCAGGCCTATCTTGCCCCCATTTTACCTTCTTCAAATGCGCCAAAACCGCTCCAAGCGTGATAATATTGGCATCTGACAGCTCCATCATCACCTTCCTCAGCCCTCGTTCTCTCTCGTGTGTCGCCCGTTGATTCGTCTCCTGATA</canonical>
            <polymorphic>AAAATACCAAAAATCAGCTAAAAAATTCGTTTTTTCTATATCTCATGGACCGGTACTGTAGGTATTTAAAGTGGGGGGAGATTTGAGTGATTTTGACAATAGAAAATTGAAAAAAATTATGCAAAATTACTGGATTCGTAGGGGGGAAGGGGAAAAAAGCACACAAGATTGATATGTACCCGAAAAATATTTTTTAAAAATGCATTTAAAAATTGTATATAAAGTGGGCGGAGCCTCCTGGATTCTAACGATGCTTCGGCACGACACGTGGATTGTTGATGAGAAAATGGAGCAACTGATGGTTGGGCATCGCCGGAATGCTGCCCGAACAGAATAGTGTCGGCGAGAAGATCGTCGCCAGGTTCTCAACGGTCATTTTGTTTTTGGAACTGTGATCGGCGACCTGGAAATGGGGGAAAACTCGCTTTTTAGGACTGTTTGGGGCTTTTTGGAGCTTTTTAGAGCCTTTTAAGGAGCTGTTTAGCAGCTTTTTAGGACTKTTTAGAGCTTTTTGGGAGCTTTTAGGAGCTGTTTAGGAGCTTTTCAGGACATTTTATGGCTTTTTAGACAATTTTTTGAGCTTCTAAGAAACTTTTTTGGAGCTTTCAAGAGCTTTTTTGGGCCTTTTTAGGACTATTCAGGACTTTTTCGAACATTTAGGAGTTTTTTAGGAGCTCTTCAGTACTTTATAGGGTCTTTTAGGTGTTCTAGGACCTTTTTAAGACTTTTTAGGAGCTTTTCAGGACTTCTTAGAAGTTTTTTAGGATTTTTTAGGACTAAAAATAGCCTTGAATAGTCTGAAATTAGTATAAAATGGCTAAAAATAGACCGAAAATTGGATTTGTAGGCCTATTTCAGGCCTATCTTGCCCCCATTTTACCTTCTTCAAATGCGCCAAAACCGCTCCAAGCGTGATAATATTGGCATCTGACAGCTCCATCATCACCTTCCTCAGCCCTCGTTCTCTCTCGTGTGTCGCCCGTTGATTCGTCTCCTGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGTTTTTGGAACTGTGAT</pcr_primer_p1>
		<pcr_primer_p2>ACTATTCAAGGCTATTTTTAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>423</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGTTTTTGGAACTGTGATCGGCGACCTGGAAATGGGGGAAAACTCGCTTTTTAGGACTGTTTGGGGCTTTTTGGAGCTTTTTAGAGCCTTTTAAGGAGCTGTTTAGCAGCTTTTTAGGACTTTTTAGAGCTTTTTGGGAGCTTTTAGGAGCTGTTTAGGAGCTTTTCAGGACATTTTATGGCTTTTTAGACAATTTTTTGAGCTTCTAAGAAACTTTTTTGGAGCTTTCAAGAGCTTTTTTGGGCCTTTTTAGGACTATTCAGGACTTTTTCGAACATTTAGGAGTTTTTTAGGAGCTCTTCAGTACTTTATAGGGTCTTTTAGGTGTTCTAGGACCTTTTTAAGACTTTTTAGGAGCTTTTCAGGACTTCTTAGAAGTTTTTTAGGATTTTTTAGGACTAAAAATAGCCTTGAATAGT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGTTTTTGGAACTGTGATCGGCGACCTGGAAATGGGGGAAAACTCGCTTTTTAGGACTGTTTGGGGCTTTTTGGAGCTTTTTAGAGCCTTTTAAGGAGCTGTTTAGCAGCTTTTTAGGACTKTTTAGAGCTTTTTGGGAGCTTTTAGGAGCTGTTTAGGAGCTTTTCAGGACATTTTATGGCTTTTTAGACAATTTTTTGAGCTTCTAAGAAACTTTTTTGGAGCTTTCAAGAGCTTTTTTGGGCCTTTTTAGGACTATTCAGGACTTTTTCGAACATTTAGGAGTTTTTTAGGAGCTCTTCAGTACTTTATAGGGTCTTTTAGGTGTTCTAGGACCTTTTTAAGACTTTTTAGGAGCTTTTCAGGACTTCTTAGAAGTTTTTTAGGATTTTTTAGGACTAAAAATAGCCTTGAATAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30440</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>202812</contig_pos>
        <strand></strand>
        <context>aggactkttt[A/G]grgctttttg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTTTTTAGAGCCTTTTAAGGAGCTGTTTAGCAGCTTTTTAGGACTTTTT</left_flank>
        <right_flank>GAGCTTTTTGGGAGCTTTTAGGAGCTGTTTAGGAGCTTTTCAGGACATTT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACCAAAAATCAGCTAAAAAATTCGTTTTTTCTATATCTCATGGACCGGTACTGTAGGTATTTAAAGTGGGGGGAGATTTGAGTGATTTTGACAATAGAAAATTGAAAAAAATTATGCAAAATTACTGGATTCGTAGGGGGGAAGGGGAAAAAAGCACACAAGATTGATATGTACCCGAAAAATATTTTTTAAAAATGCATTTAAAAATTGTATATAAAGTGGGCGGAGCCTCCTGGATTCTAACGATGCTTCGGCACGACACGTGGATTGTTGATGAGAAAATGGAGCAACTGATGGTTGGGCATCGCCGGAATGCTGCCCGAACAGAATAGTGTCGGCGAGAAGATCGTCGCCAGGTTCTCAACGGTCATTTTGTTTTTGGAACTGTGATCGGCGACCTGGAAATGGGGGAAAACTCGCTTTTTAGGACTGTTTGGGGCTTTTTGGAGCTTTTTAGAGCCTTTTAAGGAGCTGTTTAGCAGCTTTTTAGGACTTTTTAGAGCTTTTTGGGAGCTTTTAGGAGCTGTTTAGGAGCTTTTCAGGACATTTTATGGCTTTTTAGACAATTTTTTGAGCTTCTAAGAAACTTTTTTGGAGCTTTCAAGAGCTTTTTTGGGCCTTTTTAGGACTATTCAGGACTTTTTCGAACATTTAGGAGTTTTTTAGGAGCTCTTCAGTACTTTATAGGGTCTTTTAGGTGTTCTAGGACCTTTTTAAGACTTTTTAGGAGCTTTTCAGGACTTCTTAGAAGTTTTTTAGGATTTTTTAGGACTAAAAATAGCCTTGAATAGTCTGAAATTAGTATAAAATGGCTAAAAATAGACCGAAAATTGGATTTGTAGGCCTATTTCAGGCCTATCTTGCCCCCATTTTACCTTCTTCAAATGCGCCAAAACCGCTCCAAGCGTGATAATATTGGCATCTGACAGCTCCATCATCACCTTCCTCAGCCCTCGTTCTCTCTCGTGTGTCGCCCGTTGATTCGTCTCCTGATAAGCG</canonical>
            <polymorphic>TACCAAAAATCAGCTAAAAAATTCGTTTTTTCTATATCTCATGGACCGGTACTGTAGGTATTTAAAGTGGGGGGAGATTTGAGTGATTTTGACAATAGAAAATTGAAAAAAATTATGCAAAATTACTGGATTCGTAGGGGGGAAGGGGAAAAAAGCACACAAGATTGATATGTACCCGAAAAATATTTTTTAAAAATGCATTTAAAAATTGTATATAAAGTGGGCGGAGCCTCCTGGATTCTAACGATGCTTCGGCACGACACGTGGATTGTTGATGAGAAAATGGAGCAACTGATGGTTGGGCATCGCCGGAATGCTGCCCGAACAGAATAGTGTCGGCGAGAAGATCGTCGCCAGGTTCTCAACGGTCATTTTGTTTTTGGAACTGTGATCGGCGACCTGGAAATGGGGGAAAACTCGCTTTTTAGGACTGTTTGGGGCTTTTTGGAGCTTTTTAGAGCCTTTTAAGGAGCTGTTTAGCAGCTTTTTAGGACTTTTTRGAGCTTTTTGGGAGCTTTTAGGAGCTGTTTAGGAGCTTTTCAGGACATTTTATGGCTTTTTAGACAATTTTTTGAGCTTCTAAGAAACTTTTTTGGAGCTTTCAAGAGCTTTTTTGGGCCTTTTTAGGACTATTCAGGACTTTTTCGAACATTTAGGAGTTTTTTAGGAGCTCTTCAGTACTTTATAGGGTCTTTTAGGTGTTCTAGGACCTTTTTAAGACTTTTTAGGAGCTTTTCAGGACTTCTTAGAAGTTTTTTAGGATTTTTTAGGACTAAAAATAGCCTTGAATAGTCTGAAATTAGTATAAAATGGCTAAAAATAGACCGAAAATTGGATTTGTAGGCCTATTTCAGGCCTATCTTGCCCCCATTTTACCTTCTTCAAATGCGCCAAAACCGCTCCAAGCGTGATAATATTGGCATCTGACAGCTCCATCATCACCTTCCTCAGCCCTCGTTCTCTCTCGTGTGTCGCCCGTTGATTCGTCTCCTGATAAGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGTTTTTGGAACTGTGAT</pcr_primer_p1>
		<pcr_primer_p2>ACTATTCAAGGCTATTTTTAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>423</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGTTTTTGGAACTGTGATCGGCGACCTGGAAATGGGGGAAAACTCGCTTTTTAGGACTGTTTGGGGCTTTTTGGAGCTTTTTAGAGCCTTTTAAGGAGCTGTTTAGCAGCTTTTTAGGACTTTTTAGAGCTTTTTGGGAGCTTTTAGGAGCTGTTTAGGAGCTTTTCAGGACATTTTATGGCTTTTTAGACAATTTTTTGAGCTTCTAAGAAACTTTTTTGGAGCTTTCAAGAGCTTTTTTGGGCCTTTTTAGGACTATTCAGGACTTTTTCGAACATTTAGGAGTTTTTTAGGAGCTCTTCAGTACTTTATAGGGTCTTTTAGGTGTTCTAGGACCTTTTTAAGACTTTTTAGGAGCTTTTCAGGACTTCTTAGAAGTTTTTTAGGATTTTTTAGGACTAAAAATAGCCTTGAATAGT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGTTTTTGGAACTGTGATCGGCGACCTGGAAATGGGGGAAAACTCGCTTTTTAGGACTGTTTGGGGCTTTTTGGAGCTTTTTAGAGCCTTTTAAGGAGCTGTTTAGCAGCTTTTTAGGACTTTTTRGAGCTTTTTGGGAGCTTTTAGGAGCTGTTTAGGAGCTTTTCAGGACATTTTATGGCTTTTTAGACAATTTTTTGAGCTTCTAAGAAACTTTTTTGGAGCTTTCAAGAGCTTTTTTGGGCCTTTTTAGGACTATTCAGGACTTTTTCGAACATTTAGGAGTTTTTTAGGAGCTCTTCAGTACTTTATAGGGTCTTTTAGGTGTTCTAGGACCTTTTTAAGACTTTTTAGGAGCTTTTCAGGACTTCTTAGAAGTTTTTTAGGATTTTTTAGGACTAAAAATAGCCTTGAATAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30441</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>202814</contig_pos>
        <strand></strand>
        <context>gactktttrg[A/G]gctttttggg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTAGAGCCTTTTAAGGAGCTGTTTAGCAGCTTTTTAGGACTTTTTAG</left_flank>
        <right_flank>GCTTTTTGGGAGCTTTTAGGAGCTGTTTAGGAGCTTTTCAGGACATTTTA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAAAATCAGCTAAAAAATTCGTTTTTTCTATATCTCATGGACCGGTACTGTAGGTATTTAAAGTGGGGGGAGATTTGAGTGATTTTGACAATAGAAAATTGAAAAAAATTATGCAAAATTACTGGATTCGTAGGGGGGAAGGGGAAAAAAGCACACAAGATTGATATGTACCCGAAAAATATTTTTTAAAAATGCATTTAAAAATTGTATATAAAGTGGGCGGAGCCTCCTGGATTCTAACGATGCTTCGGCACGACACGTGGATTGTTGATGAGAAAATGGAGCAACTGATGGTTGGGCATCGCCGGAATGCTGCCCGAACAGAATAGTGTCGGCGAGAAGATCGTCGCCAGGTTCTCAACGGTCATTTTGTTTTTGGAACTGTGATCGGCGACCTGGAAATGGGGGAAAACTCGCTTTTTAGGACTGTTTGGGGCTTTTTGGAGCTTTTTAGAGCCTTTTAAGGAGCTGTTTAGCAGCTTTTTAGGACTTTTTAGAGCTTTTTGGGAGCTTTTAGGAGCTGTTTAGGAGCTTTTCAGGACATTTTATGGCTTTTTAGACAATTTTTTGAGCTTCTAAGAAACTTTTTTGGAGCTTTCAAGAGCTTTTTTGGGCCTTTTTAGGACTATTCAGGACTTTTTCGAACATTTAGGAGTTTTTTAGGAGCTCTTCAGTACTTTATAGGGTCTTTTAGGTGTTCTAGGACCTTTTTAAGACTTTTTAGGAGCTTTTCAGGACTTCTTAGAAGTTTTTTAGGATTTTTTAGGACTAAAAATAGCCTTGAATAGTCTGAAATTAGTATAAAATGGCTAAAAATAGACCGAAAATTGGATTTGTAGGCCTATTTCAGGCCTATCTTGCCCCCATTTTACCTTCTTCAAATGCGCCAAAACCGCTCCAAGCGTGATAATATTGGCATCTGACAGCTCCATCATCACCTTCCTCAGCCCTCGTTCTCTCTCGTGTGTCGCCCGTTGATTCGTCTCCTGATAAGCGAC</canonical>
            <polymorphic>CCAAAAATCAGCTAAAAAATTCGTTTTTTCTATATCTCATGGACCGGTACTGTAGGTATTTAAAGTGGGGGGAGATTTGAGTGATTTTGACAATAGAAAATTGAAAAAAATTATGCAAAATTACTGGATTCGTAGGGGGGAAGGGGAAAAAAGCACACAAGATTGATATGTACCCGAAAAATATTTTTTAAAAATGCATTTAAAAATTGTATATAAAGTGGGCGGAGCCTCCTGGATTCTAACGATGCTTCGGCACGACACGTGGATTGTTGATGAGAAAATGGAGCAACTGATGGTTGGGCATCGCCGGAATGCTGCCCGAACAGAATAGTGTCGGCGAGAAGATCGTCGCCAGGTTCTCAACGGTCATTTTGTTTTTGGAACTGTGATCGGCGACCTGGAAATGGGGGAAAACTCGCTTTTTAGGACTGTTTGGGGCTTTTTGGAGCTTTTTAGAGCCTTTTAAGGAGCTGTTTAGCAGCTTTTTAGGACTTTTTAGRGCTTTTTGGGAGCTTTTAGGAGCTGTTTAGGAGCTTTTCAGGACATTTTATGGCTTTTTAGACAATTTTTTGAGCTTCTAAGAAACTTTTTTGGAGCTTTCAAGAGCTTTTTTGGGCCTTTTTAGGACTATTCAGGACTTTTTCGAACATTTAGGAGTTTTTTAGGAGCTCTTCAGTACTTTATAGGGTCTTTTAGGTGTTCTAGGACCTTTTTAAGACTTTTTAGGAGCTTTTCAGGACTTCTTAGAAGTTTTTTAGGATTTTTTAGGACTAAAAATAGCCTTGAATAGTCTGAAATTAGTATAAAATGGCTAAAAATAGACCGAAAATTGGATTTGTAGGCCTATTTCAGGCCTATCTTGCCCCCATTTTACCTTCTTCAAATGCGCCAAAACCGCTCCAAGCGTGATAATATTGGCATCTGACAGCTCCATCATCACCTTCCTCAGCCCTCGTTCTCTCTCGTGTGTCGCCCGTTGATTCGTCTCCTGATAAGCGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>437 199 72 62 61 41 22 22 20 11 11 11 11 10 10</canonical_bands>
                <polymorphic_bands>437 199 72 62 61 41 31 22 22 11 11 11 10 10</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>216 211 75 61 52 51 51 31 31 22 21 21 20 20 12 11 11 11 11 11 10 10 10 10 10</canonical_bands>
                <polymorphic_bands>216 211 75 61 52 51 51 31 31 31 22 21 21 20 12 11 11 11 11 10 10 10 10 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGTTTTTGGAACTGTGAT</pcr_primer_p1>
		<pcr_primer_p2>ACTATTCAAGGCTATTTTTAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>423</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGTTTTTGGAACTGTGATCGGCGACCTGGAAATGGGGGAAAACTCGCTTTTTAGGACTGTTTGGGGCTTTTTGGAGCTTTTTAGAGCCTTTTAAGGAGCTGTTTAGCAGCTTTTTAGGACTTTTTAGAGCTTTTTGGGAGCTTTTAGGAGCTGTTTAGGAGCTTTTCAGGACATTTTATGGCTTTTTAGACAATTTTTTGAGCTTCTAAGAAACTTTTTTGGAGCTTTCAAGAGCTTTTTTGGGCCTTTTTAGGACTATTCAGGACTTTTTCGAACATTTAGGAGTTTTTTAGGAGCTCTTCAGTACTTTATAGGGTCTTTTAGGTGTTCTAGGACCTTTTTAAGACTTTTTAGGAGCTTTTCAGGACTTCTTAGAAGTTTTTTAGGATTTTTTAGGACTAAAAATAGCCTTGAATAGT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGTTTTTGGAACTGTGATCGGCGACCTGGAAATGGGGGAAAACTCGCTTTTTAGGACTGTTTGGGGCTTTTTGGAGCTTTTTAGAGCCTTTTAAGGAGCTGTTTAGCAGCTTTTTAGGACTTTTTAGRGCTTTTTGGGAGCTTTTAGGAGCTGTTTAGGAGCTTTTCAGGACATTTTATGGCTTTTTAGACAATTTTTTGAGCTTCTAAGAAACTTTTTTGGAGCTTTCAAGAGCTTTTTTGGGCCTTTTTAGGACTATTCAGGACTTTTTCGAACATTTAGGAGTTTTTTAGGAGCTCTTCAGTACTTTATAGGGTCTTTTAGGTGTTCTAGGACCTTTTTAAGACTTTTTAGGAGCTTTTCAGGACTTCTTAGAAGTTTTTTAGGATTTTTTAGGACTAAAAATAGCCTTGAATAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30442</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>217701</contig_pos>
        <strand></strand>
        <context>ttccaaaatt[G/C]tggaattttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CATTTTTTTGTCGAAATTTGAAAAAAAAAAATTTTCAAAATTCCAAAATT</left_flank>
        <right_flank>TGGAATTTTTTCACATCATATTGATTTTTATGCCATTTCAGATCGTGATA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGAAATTCAGAATTTTGACGTCTTCTGAAAATTCAAATTATCTAAACATGGGCAATATGGGTATCAAAATCTTGAGAATTGTCTGAAGAACACTGCTCAAAAAACGATAATAATGAATTTTCAGCGGTTTCAGAATTTTCAGAATATAGAAATAGAAAAAAAATCAGAATTCTGAGTTTTGACGTCTTCTGAAATTTGGGTTTTTCCAGAATCTTCTAGAAACTGGCCATGCATTGCTGCAGTTCTCCAAACCAAAGAGGACATGCTCAATCAGTGTCGTCAGACGTATAATGATGCCTTGAAGAAGGTAAAAATTCAAAAATTCGAAAAATGAAAAATTTTCAAATTGGTCCCATTTTGAGAAAAATTGATATCACGATCTAAAATTGCATGAAAACTACTATGCTGTGAATAAATTCCGAAAAATCGAAATTTTGAAAAAAAAAACATTTTTTTGTCGAAATTTGAAAAAAAAAAATTTTCAAAATTCCAAAATTGTGGAATTTTTTCACATCATATTGATTTTTATGCCATTTCAGATCGTGATATCAATTTTCATCAGTATTGGATCATTTTGAAATTTTCGAAAAAAACATCTTTCCAGGATCCCTCCTCTCTCTGCCAATCGTCCGCCGACTACGAGACTTGCTACCGTCACTTCTTCTTCACCACGTGTGGTCCAGAAGTCTCCTGGTGGGCTTGCGAACGCACCCGACGTGGCTTATCAATCGATACCGACTGCCCAATGGACACTTGTAGTCTGGTGGCTTCTGGAGTCTCTTCTGGAGACGCAACTTCTTCTGAAGGCGTTCAGAAGGTGTTCGAAATGAAAACAAATGCTGCTCTGGTGATGAGACAGCTTGCTGCTGGCAAACATTGATTTTTAAACTTTTTATTGAATAAATTTATAGCATCTACACAGTTTATAATTCCAAAAATAGCAAAAAAAAAAAACAACTACAAATTCTAAAAAAATTAGAATCCAGCGGTCCTCCTCT</canonical>
            <polymorphic>ATCGAAATTCAGAATTTTGACGTCTTCTGAAAATTCAAATTATCTAAACATGGGCAATATGGGTATCAAAATCTTGAGAATTGTCTGAAGAACACTGCTCAAAAAACGATAATAATGAATTTTCAGCGGTTTCAGAATTTTCAGAATATAGAAATAGAAAAAAAATCAGAATTCTGAGTTTTGACGTCTTCTGAAATTTGGGTTTTTCCAGAATCTTCTAGAAACTGGCCATGCATTGCTGCAGTTCTCCAAACCAAAGAGGACATGCTCAATCAGTGTCGTCAGACGTATAATGATGCCTTGAAGAAGGTAAAAATTCAAAAATTCGAAAAATGAAAAATTTTCAAATTGGTCCCATTTTGAGAAAAATTGATATCACGATCTAAAATTGCATGAAAACTACTATGCTGTGAATAAATTCCGAAAAATCGAAATTTTGAAAAAAAAAACATTTTTTTGTCGAAATTTGAAAAAAAAAAATTTTCAAAATTCCAAAATTSTGGAATTTTTTCACATCATATTGATTTTTATGCCATTTCAGATCGTGATATCAATTTTCATCAGTATTGGATCATTTTGAAATTTTCGAAAAAAACATCTTTCCAGGATCCCTCCTCTCTCTGCCAATCGTCCGCCGACTACGAGACTTGCTACCGTCACTTCTTCTTCACCACGTGTGGTCCAGAAGTCTCCTGGTGGGCTTGCGAACGCACCCGACGTGGCTTATCAATCGATACCGACTGCCCAATGGACACTTGTAGTCTGGTGGCTTCTGGAGTCTCTTCTGGAGACGCAACTTCTTCTGAAGGCGTTCAGAAGGTGTTCGAAATGAAAACAAATGCTGCTCTGGTGATGAGACAGCTTGCTGCTGGCAAACATTGATTTTTAAACTTTTTATTGAATAAATTTATAGCATCTACACAGTTTATAATTCCAAAAATAGCAAAAAAAAAAAACAACTACAAATTCTAAAAAAATTAGAATCCAGCGGTCCTCCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>184 112 100 94 90 79 69 54 34 34 33 30 19 14 14 11 11 9 4 3 2</canonical_bands>
                <polymorphic_bands>184 112 101 100 94 79 69 54 34 34 33 30 19 14 14 11 9 4 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAGAAGGTAAAAATTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAGTGACGGTAGCAAGTCT</pcr_primer_p2>
		<pcr_amplicon_size>363</pcr_amplicon_size>
		<canonical_amplicon>TGAAGAAGGTAAAAATTCAAAAATTCGAAAAATGAAAAATTTTCAAATTGGTCCCATTTTGAGAAAAATTGATATCACGATCTAAAATTGCATGAAAACTACTATGCTGTGAATAAATTCCGAAAAATCGAAATTTTGAAAAAAAAAACATTTTTTTGTCGAAATTTGAAAAAAAAAAATTTTCAAAATTCCAAAATTGTGGAATTTTTTCACATCATATTGATTTTTATGCCATTTCAGATCGTGATATCAATTTTCATCAGTATTGGATCATTTTGAAATTTTCGAAAAAAACATCTTTCCAGGATCCCTCCTCTCTCTGCCAATCGTCCGCCGACTACGAGACTTGCTACCGTCACTTCT</canonical_amplicon>
		<polymorphic_amplicon>TGAAGAAGGTAAAAATTCAAAAATTCGAAAAATGAAAAATTTTCAAATTGGTCCCATTTTGAGAAAAATTGATATCACGATCTAAAATTGCATGAAAACTACTATGCTGTGAATAAATTCCGAAAAATCGAAATTTTGAAAAAAAAAACATTTTTTTGTCGAAATTTGAAAAAAAAAAATTTTCAAAATTCCAAAATTSTGGAATTTTTTCACATCATATTGATTTTTATGCCATTTCAGATCGTGATATCAATTTTCATCAGTATTGGATCATTTTGAAATTTTCGAAAAAAACATCTTTCCAGGATCCCTCCTCTCTCTGCCAATCGTCCGCCGACTACGAGACTTGCTACCGTCACTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30443</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>217903</contig_pos>
        <strand></strand>
        <context>CCTGGTGGGC[T/G]TGCGAACGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TACCGTCACTTCTTCTTCACCACGTGTGGTCCAGAAGTCTCCTGGTGGGC</left_flank>
        <right_flank>TGCGAACGCACCCGACGTGGCTTATCAATCGATACCGACTGCCCAATGGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTCCAGAATCTTCTAGAAACTGGCCATGCATTGCTGCAGTTCTCCAAACCAAAGAGGACATGCTCAATCAGTGTCGTCAGACGTATAATGATGCCTTGAAGAAGGTAAAAATTCAAAAATTCGAAAAATGAAAAATTTTCAAATTGGTCCCATTTTGAGAAAAATTGATATCACGATCTAAAATTGCATGAAAACTACTATGCTGTGAATAAATTCCGAAAAATCGAAATTTTGAAAAAAAAAACATTTTTTTGTCGAAATTTGAAAAAAAAAAATTTTCAAAATTCCAAAATTGTGGAATTTTTTCACATCATATTGATTTTTATGCCATTTCAGATCGTGATATCAATTTTCATCAGTATTGGATCATTTTGAAATTTTCGAAAAAAACATCTTTCCAGGATCCCTCCTCTCTCTGCCAATCGTCCGCCGACTACGAGACTTGCTACCGTCACTTCTTCTTCACCACGTGTGGTCCAGAAGTCTCCTGGTGGGCTTGCGAACGCACCCGACGTGGCTTATCAATCGATACCGACTGCCCAATGGACACTTGTAGTCTGGTGGCTTCTGGAGTCTCTTCTGGAGACGCAACTTCTTCTGAAGGCGTTCAGAAGGTGTTCGAAATGAAAACAAATGCTGCTCTGGTGATGAGACAGCTTGCTGCTGGCAAACATTGATTTTTAAACTTTTTATTGAATAAATTTATAGCATCTACACAGTTTATAATTCCAAAAATAGCAAAAAAAAAAAACAACTACAAATTCTAAAAAAATTAGAATCCAGCGGTCCTCCTCTGTAGAATATTGTTCAATTCGTGATCTCCAACTTGTTGATATCCCCGGAACTGCACACTTATATCCCCGAATCCACTTGTCAACGTCCGCACCGTCTTCGATAGATTCTCAGTTTCCGAAAGTGGCAGAATCGCTGAGATCCGTCGATATTCTGAAGAAGATTGCGCCTCAAATTGGGCTCTTCGTCGGATGAGCTCGTTTAG</canonical>
            <polymorphic>TTTTTCCAGAATCTTCTAGAAACTGGCCATGCATTGCTGCAGTTCTCCAAACCAAAGAGGACATGCTCAATCAGTGTCGTCAGACGTATAATGATGCCTTGAAGAAGGTAAAAATTCAAAAATTCGAAAAATGAAAAATTTTCAAATTGGTCCCATTTTGAGAAAAATTGATATCACGATCTAAAATTGCATGAAAACTACTATGCTGTGAATAAATTCCGAAAAATCGAAATTTTGAAAAAAAAAACATTTTTTTGTCGAAATTTGAAAAAAAAAAATTTTCAAAATTCCAAAATTGTGGAATTTTTTCACATCATATTGATTTTTATGCCATTTCAGATCGTGATATCAATTTTCATCAGTATTGGATCATTTTGAAATTTTCGAAAAAAACATCTTTCCAGGATCCCTCCTCTCTCTGCCAATCGTCCGCCGACTACGAGACTTGCTACCGTCACTTCTTCTTCACCACGTGTGGTCCAGAAGTCTCCTGGTGGGCKTGCGAACGCACCCGACGTGGCTTATCAATCGATACCGACTGCCCAATGGACACTTGTAGTCTGGTGGCTTCTGGAGTCTCTTCTGGAGACGCAACTTCTTCTGAAGGCGTTCAGAAGGTGTTCGAAATGAAAACAAATGCTGCTCTGGTGATGAGACAGCTTGCTGCTGGCAAACATTGATTTTTAAACTTTTTATTGAATAAATTTATAGCATCTACACAGTTTATAATTCCAAAAATAGCAAAAAAAAAAAACAACTACAAATTCTAAAAAAATTAGAATCCAGCGGTCCTCCTCTGTAGAATATTGTTCAATTCGTGATCTCCAACTTGTTGATATCCCCGGAACTGCACACTTATATCCCCGAATCCACTTGTCAACGTCCGCACCGTCTTCGATAGATTCTCAGTTTCCGAAAGTGGCAGAATCGCTGAGATCCGTCGATATTCTGAAGAAGATTGCGCCTCAAATTGGGCTCTTCGTCGGATGAGCTCGTTTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>472 316 92 47 26 22 16 9</canonical_bands>
                <polymorphic_bands>494 316 92 47 26 16 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACTTGCTACCGTCACTTCT</pcr_primer_p1>
		<pcr_primer_p2>AAGCTGTCTCATCACCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>221</pcr_amplicon_size>
		<canonical_amplicon>AGACTTGCTACCGTCACTTCTTCTTCACCACGTGTGGTCCAGAAGTCTCCTGGTGGGCTTGCGAACGCACCCGACGTGGCTTATCAATCGATACCGACTGCCCAATGGACACTTGTAGTCTGGTGGCTTCTGGAGTCTCTTCTGGAGACGCAACTTCTTCTGAAGGCGTTCAGAAGGTGTTCGAAATGAAAACAAATGCTGCTCTGGTGATGAGACAGCTT</canonical_amplicon>
		<polymorphic_amplicon>AGACTTGCTACCGTCACTTCTTCTTCACCACGTGTGGTCCAGAAGTCTCCTGGTGGGCKTGCGAACGCACCCGACGTGGCTTATCAATCGATACCGACTGCCCAATGGACACTTGTAGTCTGGTGGCTTCTGGAGTCTCTTCTGGAGACGCAACTTCTTCTGAAGGCGTTCAGAAGGTGTTCGAAATGAAAACAAATGCTGCTCTGGTGATGAGACAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30444</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>278337</contig_pos>
        <strand></strand>
        <context>ttgtacaaga[G/A]ttgagatata</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATATCAGCTATGTTTTATCAGTTGATCATTTTTTGATATCTTGTACAAGA</left_flank>
        <right_flank>TTGAGATATATGAGCTCAAAGTTGAACAGTCGCGCCTTTCTAATACAGGT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAAAAGTATAGAAAATTAACATTATACCAATTTATCTCGGTCCCTGTCATAGAAATACAAACTAGTTGCTAATTGATAAAATGTTGATTACATTATGATGAACAATTTATCAGTTGACACATTTTTAATTTCTTGCACAGGAACCGAAGTAATTGAGCTTAAACTTGACAGTTTGGTAGCCATTCTAATACAGATATTACTGTAACTGAATGTCTAATTTACAAATTACTGGTCAAACAGTGAATTGAGCTTTTTATCACAACCAGCTTTATGTGAAATTTGAGCTCAGAAAACCTAAAAAGCTCATTCAAATTGCGACGTGAGCTGACTAATATGGATCATCAGCCGTAAAACCTTTAATAGAAATGCTCGTTAACTTTGAGACTGTTTCTTTTGGTTCCTGTCAAAGATATAAAAAAATTATCAACTGATAAATTGTTTAATATAATATCAGCTATGTTTTATCAGTTGATCATTTTTTGATATCTTGTACAAGAGTTGAGATATATGAGCTCAAAGTTGAACAGTCGCGCCTTTCTAATACAGGTGTATGGTATCTAGATTAGAACAAAATTATGAATATCATTCATTCAAAACCTTACACAAAAGTCCAGATGCCAATCATTCATACATTCCAGCCTCCTTCAACAACTTCTCCGCATCCTTGGCACCGGCATCAAAGTACTGTTGAAGCATGCCACGTGGCGGAGGGAACAACGCATTCGAGACGCGCTTCATGTTGGAGAAGGTGACTTTCATGTTCTGATTGAAGAATGCAAACATCCAATCATTGAAAAGTGCCGATTTTTCAGTCGGACAAATATCGGCGTCTCCAGCGAAAGCCGTCACGGATACGGTACGTTTGTCAAGGAATTCTGGGAGGATGTTCGAGTAGCCACCGTCGATGTAGGGCTGGAAATTTGGGATTGAGTTTTATGAAATTCCTAAAATAGGTTGGTAGACCAATGGGTGAAGTTATGAGAAACCATAAGCATAGA</canonical>
            <polymorphic>GGAAAAAGTATAGAAAATTAACATTATACCAATTTATCTCGGTCCCTGTCATAGAAATACAAACTAGTTGCTAATTGATAAAATGTTGATTACATTATGATGAACAATTTATCAGTTGACACATTTTTAATTTCTTGCACAGGAACCGAAGTAATTGAGCTTAAACTTGACAGTTTGGTAGCCATTCTAATACAGATATTACTGTAACTGAATGTCTAATTTACAAATTACTGGTCAAACAGTGAATTGAGCTTTTTATCACAACCAGCTTTATGTGAAATTTGAGCTCAGAAAACCTAAAAAGCTCATTCAAATTGCGACGTGAGCTGACTAATATGGATCATCAGCCGTAAAACCTTTAATAGAAATGCTCGTTAACTTTGAGACTGTTTCTTTTGGTTCCTGTCAAAGATATAAAAAAATTATCAACTGATAAATTGTTTAATATAATATCAGCTATGTTTTATCAGTTGATCATTTTTTGATATCTTGTACAAGARTTGAGATATATGAGCTCAAAGTTGAACAGTCGCGCCTTTCTAATACAGGTGTATGGTATCTAGATTAGAACAAAATTATGAATATCATTCATTCAAAACCTTACACAAAAGTCCAGATGCCAATCATTCATACATTCCAGCCTCCTTCAACAACTTCTCCGCATCCTTGGCACCGGCATCAAAGTACTGTTGAAGCATGCCACGTGGCGGAGGGAACAACGCATTCGAGACGCGCTTCATGTTGGAGAAGGTGACTTTCATGTTCTGATTGAAGAATGCAAACATCCAATCATTGAAAAGTGCCGATTTTTCAGTCGGACAAATATCGGCGTCTCCAGCGAAAGCCGTCACGGATACGGTACGTTTGTCAAGGAATTCTGGGAGGATGTTCGAGTAGCCACCGTCGATGTAGGGCTGGAAATTTGGGATTGAGTTTTATGAAATTCCTAAAATAGGTTGGTAGACCAATGGGTGAAGTTATGAGAAACCATAAGCATAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCTGACTAATATGGATCATCA</pcr_primer_p1>
		<pcr_primer_p2>GGCATCTGGACTTTTGTGTA</pcr_primer_p2>
		<pcr_amplicon_size>298</pcr_amplicon_size>
		<canonical_amplicon>GAGCTGACTAATATGGATCATCAGCCGTAAAACCTTTAATAGAAATGCTCGTTAACTTTGAGACTGTTTCTTTTGGTTCCTGTCAAAGATATAAAAAAATTATCAACTGATAAATTGTTTAATATAATATCAGCTATGTTTTATCAGTTGATCATTTTTTGATATCTTGTACAAGAGTTGAGATATATGAGCTCAAAGTTGAACAGTCGCGCCTTTCTAATACAGGTGTATGGTATCTAGATTAGAACAAAATTATGAATATCATTCATTCAAAACCTTACACAAAAGTCCAGATGCC</canonical_amplicon>
		<polymorphic_amplicon>GAGCTGACTAATATGGATCATCAGCCGTAAAACCTTTAATAGAAATGCTCGTTAACTTTGAGACTGTTTCTTTTGGTTCCTGTCAAAGATATAAAAAAATTATCAACTGATAAATTGTTTAATATAATATCAGCTATGTTTTATCAGTTGATCATTTTTTGATATCTTGTACAAGARTTGAGATATATGAGCTCAAAGTTGAACAGTCGCGCCTTTCTAATACAGGTGTATGGTATCTAGATTAGAACAAAATTATGAATATCATTCATTCAAAACCTTACACAAAAGTCCAGATGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30445</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>278438</contig_pos>
        <strand>+</strand>
        <context>ATTCAAAACC[A/T]TACACAAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTATGGTATCTAGATTAGAACAAAATTATGAATATCATTCATTCAAAACC</left_flank>
        <right_flank>TACACAAAAGTCCAGATGCCAATCATTCATACATTCCAGCCTCCTTCAAC</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACAATTTATCAGTTGACACATTTTTAATTTCTTGCACAGGAACCGAAGTAATTGAGCTTAAACTTGACAGTTTGGTAGCCATTCTAATACAGATATTACTGTAACTGAATGTCTAATTTACAAATTACTGGTCAAACAGTGAATTGAGCTTTTTATCACAACCAGCTTTATGTGAAATTTGAGCTCAGAAAACCTAAAAAGCTCATTCAAATTGCGACGTGAGCTGACTAATATGGATCATCAGCCGTAAAACCTTTAATAGAAATGCTCGTTAACTTTGAGACTGTTTCTTTTGGTTCCTGTCAAAGATATAAAAAAATTATCAACTGATAAATTGTTTAATATAATATCAGCTATGTTTTATCAGTTGATCATTTTTTGATATCTTGTACAAGAGTTGAGATATATGAGCTCAAAGTTGAACAGTCGCGCCTTTCTAATACAGGTGTATGGTATCTAGATTAGAACAAAATTATGAATATCATTCATTCAAAACCTTACACAAAAGTCCAGATGCCAATCATTCATACATTCCAGCCTCCTTCAACAACTTCTCCGCATCCTTGGCACCGGCATCAAAGTACTGTTGAAGCATGCCACGTGGCGGAGGGAACAACGCATTCGAGACGCGCTTCATGTTGGAGAAGGTGACTTTCATGTTCTGATTGAAGAATGCAAACATCCAATCATTGAAAAGTGCCGATTTTTCAGTCGGACAAATATCGGCGTCTCCAGCGAAAGCCGTCACGGATACGGTACGTTTGTCAAGGAATTCTGGGAGGATGTTCGAGTAGCCACCGTCGATGTAGGGCTGGAAATTTGGGATTGAGTTTTATGAAATTCCTAAAATAGGTTGGTAGACCAATGGGTGAAGTTATGAGAAACCATAAGCATAGAGTGTCCCTCACACTGTCAACTTTGAGCAAATTTATCTCGATTCCTGTGAAAGATATCAAAAATCTGTCAACTGATAAAACATTTCTAACATTATGATAAAC</canonical>
            <polymorphic>GAACAATTTATCAGTTGACACATTTTTAATTTCTTGCACAGGAACCGAAGTAATTGAGCTTAAACTTGACAGTTTGGTAGCCATTCTAATACAGATATTACTGTAACTGAATGTCTAATTTACAAATTACTGGTCAAACAGTGAATTGAGCTTTTTATCACAACCAGCTTTATGTGAAATTTGAGCTCAGAAAACCTAAAAAGCTCATTCAAATTGCGACGTGAGCTGACTAATATGGATCATCAGCCGTAAAACCTTTAATAGAAATGCTCGTTAACTTTGAGACTGTTTCTTTTGGTTCCTGTCAAAGATATAAAAAAATTATCAACTGATAAATTGTTTAATATAATATCAGCTATGTTTTATCAGTTGATCATTTTTTGATATCTTGTACAAGAGTTGAGATATATGAGCTCAAAGTTGAACAGTCGCGCCTTTCTAATACAGGTGTATGGTATCTAGATTAGAACAAAATTATGAATATCATTCATTCAAAACCWTACACAAAAGTCCAGATGCCAATCATTCATACATTCCAGCCTCCTTCAACAACTTCTCCGCATCCTTGGCACCGGCATCAAAGTACTGTTGAAGCATGCCACGTGGCGGAGGGAACAACGCATTCGAGACGCGCTTCATGTTGGAGAAGGTGACTTTCATGTTCTGATTGAAGAATGCAAACATCCAATCATTGAAAAGTGCCGATTTTTCAGTCGGACAAATATCGGCGTCTCCAGCGAAAGCCGTCACGGATACGGTACGTTTGTCAAGGAATTCTGGGAGGATGTTCGAGTAGCCACCGTCGATGTAGGGCTGGAAATTTGGGATTGAGTTTTATGAAATTCCTAAAATAGGTTGGTAGACCAATGGGTGAAGTTATGAGAAACCATAAGCATAGAGTGTCCCTCACACTGTCAACTTTGAGCAAATTTATCTCGATTCCTGTGAAAGATATCAAAAATCTGTCAACTGATAAAACATTTCTAACATTATGATAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCTGACTAATATGGATCATCA</pcr_primer_p1>
		<pcr_primer_p2>TCACCTTCTCCAACATGAAG</pcr_primer_p2>
		<pcr_amplicon_size>431</pcr_amplicon_size>
		<canonical_amplicon>GAGCTGACTAATATGGATCATCAGCCGTAAAACCTTTAATAGAAATGCTCGTTAACTTTGAGACTGTTTCTTTTGGTTCCTGTCAAAGATATAAAAAAATTATCAACTGATAAATTGTTTAATATAATATCAGCTATGTTTTATCAGTTGATCATTTTTTGATATCTTGTACAAGAGTTGAGATATATGAGCTCAAAGTTGAACAGTCGCGCCTTTCTAATACAGGTGTATGGTATCTAGATTAGAACAAAATTATGAATATCATTCATTCAAAACCTTACACAAAAGTCCAGATGCCAATCATTCATACATTCCAGCCTCCTTCAACAACTTCTCCGCATCCTTGGCACCGGCATCAAAGTACTGTTGAAGCATGCCACGTGGCGGAGGGAACAACGCATTCGAGACGCGCTTCATGTTGGAGAAGGTGA</canonical_amplicon>
		<polymorphic_amplicon>GAGCTGACTAATATGGATCATCAGCCGTAAAACCTTTAATAGAAATGCTCGTTAACTTTGAGACTGTTTCTTTTGGTTCCTGTCAAAGATATAAAAAAATTATCAACTGATAAATTGTTTAATATAATATCAGCTATGTTTTATCAGTTGATCATTTTTTGATATCTTGTACAAGAGTTGAGATATATGAGCTCAAAGTTGAACAGTCGCGCCTTTCTAATACAGGTGTATGGTATCTAGATTAGAACAAAATTATGAATATCATTCATTCAAAACCWTACACAAAAGTCCAGATGCCAATCATTCATACATTCCAGCCTCCTTCAACAACTTCTCCGCATCCTTGGCACCGGCATCAAAGTACTGTTGAAGCATGCCACGTGGCGGAGGGAACAACGCATTCGAGACGCGCTTCATGTTGGAGAAGGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30446</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>279845</contig_pos>
        <strand>+</strand>
        <context>CCCGATGAGC[A/C]CCCGGAATAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTCTCCGGATTGAAAATGAGCATCGTGGTCACTAGACTTCCCGATGAGC</left_flank>
        <right_flank>CCCGGAATATCTATCAACTCTCTTCAGCAACTCTTTTCCATGATCGTAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATGCGCCATTGAATTAGGCGCGGCTCCCCTCCTGTCAGGCGCAGTGCAAAAAGAGGCGTCAACTTTAAAGGCGCATATCTCAAGAATATAAAAAGCAATTAAAATTTTATCAAATACAAAATTACTCGGCATAAAATTTTAAATACTTTTGTAATTGACCACTTTTTGCAAGCTACCGTAGTTTTTAAGATATGCGCCTTCAAAGTTCCCGCCTTACCTTCAATCTAGTAACCGAGACAAAAAGTAAATCATTAGCTTTCGAGATATCATCAGGCACAAATCTTTCAACAACTTTTCGAAGACGATCCCCAATCACAAATCCTGGAGACATTGCTCCAAGAGCGGTCTCATTGACTTCATCAGCCATTTTATAGATTTCTTCAACGGCTTCAGATATTCTAAAAATCAAAATCTTTAATTTCAAAACTTCAAATTCGTTAAATCCAACTTCTCCGGATTGAAAATGAGCATCGTGGTCACTAGACTTCCCGATGAGCACCCGGAATATCTATCAACTCTCTTCAGCAACTCTTTTCCATGATCGTAGATCATTTTGGCTGCTCCAAACTGGTAGGATCCCAAAAATCCACATCCACCAAAAGAGAGGCATAGTTCGGAGGCATCTGGAATTTGCAAGCTCAATTTTCTTGGTTCCTGTGAGAGATACCAAAGATTTGTCAACTGATAAAATATTTATCATATTATCGTCAACATTTTATCAGTCATAGCACATTTTTGAAATCTTTCATAGCAACCGAGATAAATTGTCTTAAAGCTATTAGGTCGGCAGGCGATCACTTAGCTCAGCCGCTCATCTAACTTTGAGCCAATTTATCTCGGCTCCTGTGAGAGATACCAACAATCTGTAAATGATAAATGATTTATCATATTATCACCAATGTTTTATCAGTTCAAAAGTTTTTGATATCTTTTACAGGGACCGAGATAAATTGGTTTAAAATAAAGGAGCCGGCGCTTGCAGGGGTCGCCTGCCGGCC</canonical>
            <polymorphic>ATATGCGCCATTGAATTAGGCGCGGCTCCCCTCCTGTCAGGCGCAGTGCAAAAAGAGGCGTCAACTTTAAAGGCGCATATCTCAAGAATATAAAAAGCAATTAAAATTTTATCAAATACAAAATTACTCGGCATAAAATTTTAAATACTTTTGTAATTGACCACTTTTTGCAAGCTACCGTAGTTTTTAAGATATGCGCCTTCAAAGTTCCCGCCTTACCTTCAATCTAGTAACCGAGACAAAAAGTAAATCATTAGCTTTCGAGATATCATCAGGCACAAATCTTTCAACAACTTTTCGAAGACGATCCCCAATCACAAATCCTGGAGACATTGCTCCAAGAGCGGTCTCATTGACTTCATCAGCCATTTTATAGATTTCTTCAACGGCTTCAGATATTCTAAAAATCAAAATCTTTAATTTCAAAACTTCAAATTCGTTAAATCCAACTTCTCCGGATTGAAAATGAGCATCGTGGTCACTAGACTTCCCGATGAGCMCCCGGAATATCTATCAACTCTCTTCAGCAACTCTTTTCCATGATCGTAGATCATTTTGGCTGCTCCAAACTGGTAGGATCCCAAAAATCCACATCCACCAAAAGAGAGGCATAGTTCGGAGGCATCTGGAATTTGCAAGCTCAATTTTCTTGGTTCCTGTGAGAGATACCAAAGATTTGTCAACTGATAAAATATTTATCATATTATCGTCAACATTTTATCAGTCATAGCACATTTTTGAAATCTTTCATAGCAACCGAGATAAATTGTCTTAAAGCTATTAGGTCGGCAGGCGATCACTTAGCTCAGCCGCTCATCTAACTTTGAGCCAATTTATCTCGGCTCCTGTGAGAGATACCAACAATCTGTAAATGATAAATGATTTATCATATTATCACCAATGTTTTATCAGTTCAAAAGTTTTTGATATCTTTTACAGGGACCGAGATAAATTGGTTTAAAATAAAGGAGCCGGCGCTTGCAGGGGTCGCCTGCCGGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>160 115 115 103 91 71 67 64 51 48 47 39 19 6 4</canonical_bands>
                <polymorphic_bands>160 115 115 110 103 71 67 64 51 48 47 39 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGCCATTTTATAGATTTCTTCA</pcr_primer_p1>
		<pcr_primer_p2>CGAACTATGCCTCTCTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CAGCCATTTTATAGATTTCTTCAACGGCTTCAGATATTCTAAAAATCAAAATCTTTAATTTCAAAACTTCAAATTCGTTAAATCCAACTTCTCCGGATTGAAAATGAGCATCGTGGTCACTAGACTTCCCGATGAGCACCCGGAATATCTATCAACTCTCTTCAGCAACTCTTTTCCATGATCGTAGATCATTTTGGCTGCTCCAAACTGGTAGGATCCCAAAAATCCACATCCACCAAAAGAGAGGCATAGTTCG</canonical_amplicon>
		<polymorphic_amplicon>CAGCCATTTTATAGATTTCTTCAACGGCTTCAGATATTCTAAAAATCAAAATCTTTAATTTCAAAACTTCAAATTCGTTAAATCCAACTTCTCCGGATTGAAAATGAGCATCGTGGTCACTAGACTTCCCGATGAGCMCCCGGAATATCTATCAACTCTCTTCAGCAACTCTTTTCCATGATCGTAGATCATTTTGGCTGCTCCAAACTGGTAGGATCCCAAAAATCCACATCCACCAAAAGAGAGGCATAGTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30447</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>280207</contig_pos>
        <strand></strand>
        <context>gagataccaa[C/A]aatctgtaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GCTCATCTAACTTTGAGCCAATTTATCTCGGCTCCTGTGAGAGATACCAA</left_flank>
        <right_flank>AATCTGTAAATGATAAATGATTTATCATATTATCACCAATGTTTTATCAG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCCATTTTATAGATTTCTTCAACGGCTTCAGATATTCTAAAAATCAAAATCTTTAATTTCAAAACTTCAAATTCGTTAAATCCAACTTCTCCGGATTGAAAATGAGCATCGTGGTCACTAGACTTCCCGATGAGCACCCGGAATATCTATCAACTCTCTTCAGCAACTCTTTTCCATGATCGTAGATCATTTTGGCTGCTCCAAACTGGTAGGATCCCAAAAATCCACATCCACCAAAAGAGAGGCATAGTTCGGAGGCATCTGGAATTTGCAAGCTCAATTTTCTTGGTTCCTGTGAGAGATACCAAAGATTTGTCAACTGATAAAATATTTATCATATTATCGTCAACATTTTATCAGTCATAGCACATTTTTGAAATCTTTCATAGCAACCGAGATAAATTGTCTTAAAGCTATTAGGTCGGCAGGCGATCACTTAGCTCAGCCGCTCATCTAACTTTGAGCCAATTTATCTCGGCTCCTGTGAGAGATACCAACAATCTGTAAATGATAAATGATTTATCATATTATCACCAATGTTTTATCAGTTCAAAAGTTTTTGATATCTTTTACAGGGACCGAGATAAATTGGTTTAAAATAAAGGAGCCGGCGCTTGCAGGGGTCGCCTGCCGGCCGACTTTTTTACTTTGAGCCAATTCATCTCGATTTCTGTGAAAGATATCAAAAATCTATCAACTGATAAAATGTTTATCATATTATCAGCAATATTTTATCAATTGACACATTTCTCGTAATTCTCATAGGAACCTAGATAATTGAGCTCCAATTAGAGCAACAACAGTACCTTGCAACGGTGTCCGATTTGCTGGATCTCTTGCCTTTCTCAATGGAAATTGTCGCTTTTTACGAATCTCCAATTCATCCATCTCCTTCTTTTTTTTATCTTCCGGTTCTTCATTTTCCTTATTGGATTCAGAGACCGAATCTGAAGACGTTGGGCTCTTCTCACTTGTCTCATCGTTACTTCCTGCGGACT</canonical>
            <polymorphic>CAGCCATTTTATAGATTTCTTCAACGGCTTCAGATATTCTAAAAATCAAAATCTTTAATTTCAAAACTTCAAATTCGTTAAATCCAACTTCTCCGGATTGAAAATGAGCATCGTGGTCACTAGACTTCCCGATGAGCACCCGGAATATCTATCAACTCTCTTCAGCAACTCTTTTCCATGATCGTAGATCATTTTGGCTGCTCCAAACTGGTAGGATCCCAAAAATCCACATCCACCAAAAGAGAGGCATAGTTCGGAGGCATCTGGAATTTGCAAGCTCAATTTTCTTGGTTCCTGTGAGAGATACCAAAGATTTGTCAACTGATAAAATATTTATCATATTATCGTCAACATTTTATCAGTCATAGCACATTTTTGAAATCTTTCATAGCAACCGAGATAAATTGTCTTAAAGCTATTAGGTCGGCAGGCGATCACTTAGCTCAGCCGCTCATCTAACTTTGAGCCAATTTATCTCGGCTCCTGTGAGAGATACCAAMAATCTGTAAATGATAAATGATTTATCATATTATCACCAATGTTTTATCAGTTCAAAAGTTTTTGATATCTTTTACAGGGACCGAGATAAATTGGTTTAAAATAAAGGAGCCGGCGCTTGCAGGGGTCGCCTGCCGGCCGACTTTTTTACTTTGAGCCAATTCATCTCGATTTCTGTGAAAGATATCAAAAATCTATCAACTGATAAAATGTTTATCATATTATCAGCAATATTTTATCAATTGACACATTTCTCGTAATTCTCATAGGAACCTAGATAATTGAGCTCCAATTAGAGCAACAACAGTACCTTGCAACGGTGTCCGATTTGCTGGATCTCTTGCCTTTCTCAATGGAAATTGTCGCTTTTTACGAATCTCCAATTCATCCATCTCCTTCTTTTTTTTATCTTCCGGTTCTTCATTTTCCTTATTGGATTCAGAGACCGAATCTGAAGACGTTGGGCTCTTCTCACTTGTCTCATCGTTACTTCCTGCGGACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCAAAAGAGAGGCATAGTTC</pcr_primer_p1>
		<pcr_primer_p2>CATTGAGAAAGGCAAGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>619</pcr_amplicon_size>
		<canonical_amplicon>ACCAAAAGAGAGGCATAGTTCGGAGGCATCTGGAATTTGCAAGCTCAATTTTCTTGGTTCCTGTGAGAGATACCAAAGATTTGTCAACTGATAAAATATTTATCATATTATCGTCAACATTTTATCAGTCATAGCACATTTTTGAAATCTTTCATAGCAACCGAGATAAATTGTCTTAAAGCTATTAGGTCGGCAGGCGATCACTTAGCTCAGCCGCTCATCTAACTTTGAGCCAATTTATCTCGGCTCCTGTGAGAGATACCAACAATCTGTAAATGATAAATGATTTATCATATTATCACCAATGTTTTATCAGTTCAAAAGTTTTTGATATCTTTTACAGGGACCGAGATAAATTGGTTTAAAATAAAGGAGCCGGCGCTTGCAGGGGTCGCCTGCCGGCCGACTTTTTTACTTTGAGCCAATTCATCTCGATTTCTGTGAAAGATATCAAAAATCTATCAACTGATAAAATGTTTATCATATTATCAGCAATATTTTATCAATTGACACATTTCTCGTAATTCTCATAGGAACCTAGATAATTGAGCTCCAATTAGAGCAACAACAGTACCTTGCAACGGTGTCCGATTTGCTGGATCTCTTGCCTTTCTCAATG</canonical_amplicon>
		<polymorphic_amplicon>ACCAAAAGAGAGGCATAGTTCGGAGGCATCTGGAATTTGCAAGCTCAATTTTCTTGGTTCCTGTGAGAGATACCAAAGATTTGTCAACTGATAAAATATTTATCATATTATCGTCAACATTTTATCAGTCATAGCACATTTTTGAAATCTTTCATAGCAACCGAGATAAATTGTCTTAAAGCTATTAGGTCGGCAGGCGATCACTTAGCTCAGCCGCTCATCTAACTTTGAGCCAATTTATCTCGGCTCCTGTGAGAGATACCAAMAATCTGTAAATGATAAATGATTTATCATATTATCACCAATGTTTTATCAGTTCAAAAGTTTTTGATATCTTTTACAGGGACCGAGATAAATTGGTTTAAAATAAAGGAGCCGGCGCTTGCAGGGGTCGCCTGCCGGCCGACTTTTTTACTTTGAGCCAATTCATCTCGATTTCTGTGAAAGATATCAAAAATCTATCAACTGATAAAATGTTTATCATATTATCAGCAATATTTTATCAATTGACACATTTCTCGTAATTCTCATAGGAACCTAGATAATTGAGCTCCAATTAGAGCAACAACAGTACCTTGCAACGGTGTCCGATTTGCTGGATCTCTTGCCTTTCTCAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30448</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>323661</contig_pos>
        <strand>+</strand>
        <context>CAGATGACAC[G/T]AAGAAAGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATCCTCCTGTTTTCTCAATCTCATCTAAATCTTGTTTAATCAGATGACAC</left_flank>
        <right_flank>AAGAAAGAAAAAGATAATTAGAGAAAAAGAGAAAAAAGATAGTGGTCCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTCCGGTTTGTGAGGAATTTGATCTTTTTATCATTTTTTTTTAAATCTTGCTTATCCAAAATGACCATGTTCTTTTAGTAAAAAAAGTAATGAAAAATTGTTTAAAATGCTTATCATAATATCAGCAACATTTTATCAGTTAACAGTTTCTAATATCTTTTACAGGAAATGAGAAACATGAGTTCAAAGCGGGTGGGTTGGGTGGCGTTCTAATAGAGCATGTTGTCAAATTAAGGAATCTCAATTTTTCGAAATGAATAATTTTCAATTTTGAATATTCCTTCAAAAAATAAGTGTGTCAAAGATTTTTGAAAACCGATGGCTGTCTAAACTATAGAATAAAAATCGTCCAAAAAAAAGATTACTTTTCAAATTCTATGGAATGGAATTAGCTAGTCAAGGAAAAAGAAAAAAAGAAAAAATAATAATTGCTATTATTATTTTTGATCCTCCTGTTTTCTCAATCTCATCTAAATCTTGTTTAATCAGATGACACAAAGAAAGAAAAAGATAATTAGAGAAAAAGAGAAAAAAGATAGTGGTCCCCACCCCGAGTCTCTCGTAACAACTGTTTAGATGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAAAAAGAATCATCTGTGAACTTTTCCCCACAAGATGGGTGGATCTGGGAAACAACATGATGATGAGAAGAGACAAGAATTATGATGGGAGAGAAAGATTTTGAAATTTTTGGAAATTTTTGGAAATTAGCTACCGCGCTCCACTGCTAACCACATTATTTTTAATTTAGCAACTTCAAAATAAAACAAAAAAAACACATTTTGAAGGCCAAAAAGGGGGAAATTGGAAAAAAAATGGGCAAAACTAAATATCACATTACGGAAATGGAATGGCAGCACATCATGCACTTTTTGGAGGGGAAATATGATTCATTTTTTTATCTAGAAAAAATGACAAAAAAGATGCAAAATCGCTCTGAAGAACAATCTGAAT</canonical>
            <polymorphic>AAATTCCGGTTTGTGAGGAATTTGATCTTTTTATCATTTTTTTTTAAATCTTGCTTATCCAAAATGACCATGTTCTTTTAGTAAAAAAAGTAATGAAAAATTGTTTAAAATGCTTATCATAATATCAGCAACATTTTATCAGTTAACAGTTTCTAATATCTTTTACAGGAAATGAGAAACATGAGTTCAAAGCGGGTGGGTTGGGTGGCGTTCTAATAGAGCATGTTGTCAAATTAAGGAATCTCAATTTTTCGAAATGAATAATTTTCAATTTTGAATATTCCTTCAAAAAATAAGTGTGTCAAAGATTTTTGAAAACCGATGGCTGTCTAAACTATAGAATAAAAATCGTCCAAAAAAAAGATTACTTTTCAAATTCTATGGAATGGAATTAGCTAGTCAAGGAAAAAGAAAAAAAGAAAAAATAATAATTGCTATTATTATTTTTGATCCTCCTGTTTTCTCAATCTCATCTAAATCTTGTTTAATCAGATGACACKAAGAAAGAAAAAGATAATTAGAGAAAAAGAGAAAAAAGATAGTGGTCCCCACCCCGAGTCTCTCGTAACAACTGTTTAGATGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAAAAAGAATCATCTGTGAACTTTTCCCCACAAGATGGGTGGATCTGGGAAACAACATGATGATGAGAAGAGACAAGAATTATGATGGGAGAGAAAGATTTTGAAATTTTTGGAAATTTTTGGAAATTAGCTACCGCGCTCCACTGCTAACCACATTATTTTTAATTTAGCAACTTCAAAATAAAACAAAAAAAACACATTTTGAAGGCCAAAAAGGGGGAAATTGGAAAAAAAATGGGCAAAACTAAATATCACATTACGGAAATGGAATGGCAGCACATCATGCACTTTTTGGAGGGGAAATATGATTCATTTTTTTATCTAGAAAAAATGACAAAAAAGATGCAAAATCGCTCTGAAGAACAATCTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTATTTTTGATCCTCCTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>CATCATGTTGTTTCCCAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTATTTTTGATCCTCCTGTTTTCTCAATCTCATCTAAATCTTGTTTAATCAGATGACACAAAGAAAGAAAAAGATAATTAGAGAAAAAGAGAAAAAAGATAGTGGTCCCCACCCCGAGTCTCTCGTAACAACTGTTTAGATGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAAAAAGAATCATCTGTGAACTTTTCCCCACAAGATGGGTGGATCTGGGAAACAACATGATG</canonical_amplicon>
		<polymorphic_amplicon>ATTATTTTTGATCCTCCTGTTTTCTCAATCTCATCTAAATCTTGTTTAATCAGATGACACKAAGAAAGAAAAAGATAATTAGAGAAAAAGAGAAAAAAGATAGTGGTCCCCACCCCGAGTCTCTCGTAACAACTGTTTAGATGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAAAAAGAATCATCTGTGAACTTTTCCCCACAAGATGGGTGGATCTGGGAAACAACATGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30449</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>368034</contig_pos>
        <strand></strand>
        <context>CGTCGGAAGC[A/T]CGACGGTCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTGTCACGAAATCGGCCGAATAGCTCCTCGCTGAGCGGCGTCGGAAGC</left_flank>
        <right_flank>CGACGGTCTCCATGAATTCCTGTAACTTCTGATGGCGAAATTTTAGAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGGCGAAATTCACCTTTTCACTAAATTCTCTTCAAAATTTTATAATTTTTGTTCAAAATTGAAAGCTTAGGCTGAAACGCCTTGATTCCCTTCCACTGTGACATCCGAAAAAAGGCGCCAACATCAAAAAATTGGCAAAAAACTAAATTTTCAGATTTGAAGACCTTATTTCGTGGCGAGACCCAATAATTTGGAAATTTCGGAAATTTTATGAGCAGACCCAACGCCTCCTTACCGTCGCTCCTGTCAAATCCAGTTTCTGCAGCGGCAATCTTGTAGAATCTGACCAAACTCTGAACACTTGTCGGATCATATCCAAATTCCCCTGATCGACTCTCTCCTGACCATCAGGCGGTCCTAAACGCTCCACGTGTTGAGCGCCCTGTAATTATTTAATTAGGTATAATTAGAACATCAATCTAACTCACATGCTGATTATAATAATTCCATTTGTCACGAAATCGGCCGAATAGCTCCTCGCTGAGCGGCGTCGGAAGCACGACGGTCTCCATGAATTCCTGTAACTTCTGATGGCGAAATTTTAGAAAATCTTTTTTTAAATTTTCTTCTTACATCATTCTCGAGTTGCGTCATTACCGCCGCCGATGCGAGCCGAATCATCGTTGGCGCTTCCAGCGGAACATCCGCCGTATGTGACATTTTTGCGATTTCAGTCTGGAAATTTTTTGGTTTTTAGGGATTATTAAAAGGTTTTAGACACCAAAAACAGCGAGTGAATCAATAGAAAATCGGGAGGGACTGGTGATTTACAAGGAGAAGGGATATAAGGAAATAGGAAGAATTGGCGGACAAGGAGAGCGAGCGAGAGAGATAGAATCGAAAAGTGCAAGTTTCGGTGGCCCACTTTTTTAATGTGACTGGTTTTAGGTGATAAAAACAGATGGGAAAAATACGGCGGTTTGATTAGATTGAGAGGATTTTCGCGCGGTGCTTTGAGAAGAGGAGAGAGAGAGAGAGAGACGCAGAGAAAAGTGGTCT</canonical>
            <polymorphic>TCGGCGAAATTCACCTTTTCACTAAATTCTCTTCAAAATTTTATAATTTTTGTTCAAAATTGAAAGCTTAGGCTGAAACGCCTTGATTCCCTTCCACTGTGACATCCGAAAAAAGGCGCCAACATCAAAAAATTGGCAAAAAACTAAATTTTCAGATTTGAAGACCTTATTTCGTGGCGAGACCCAATAATTTGGAAATTTCGGAAATTTTATGAGCAGACCCAACGCCTCCTTACCGTCGCTCCTGTCAAATCCAGTTTCTGCAGCGGCAATCTTGTAGAATCTGACCAAACTCTGAACACTTGTCGGATCATATCCAAATTCCCCTGATCGACTCTCTCCTGACCATCAGGCGGTCCTAAACGCTCCACGTGTTGAGCGCCCTGTAATTATTTAATTAGGTATAATTAGAACATCAATCTAACTCACATGCTGATTATAATAATTCCATTTGTCACGAAATCGGCCGAATAGCTCCTCGCTGAGCGGCGTCGGAAGCWCGACGGTCTCCATGAATTCCTGTAACTTCTGATGGCGAAATTTTAGAAAATCTTTTTTTAAATTTTCTTCTTACATCATTCTCGAGTTGCGTCATTACCGCCGCCGATGCGAGCCGAATCATCGTTGGCGCTTCCAGCGGAACATCCGCCGTATGTGACATTTTTGCGATTTCAGTCTGGAAATTTTTTGGTTTTTAGGGATTATTAAAAGGTTTTAGACACCAAAAACAGCGAGTGAATCAATAGAAAATCGGGAGGGACTGGTGATTTACAAGGAGAAGGGATATAAGGAAATAGGAAGAATTGGCGGACAAGGAGAGCGAGCGAGAGAGATAGAATCGAAAAGTGCAAGTTTCGGTGGCCCACTTTTTTAATGTGACTGGTTTTAGGTGATAAAAACAGATGGGAAAAATACGGCGGTTTGATTAGATTGAGAGGATTTTCGCGCGGTGCTTTGAGAAGAGGAGAGAGAGAGAGAGAGACGCAGAGAAAAGTGGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>157 125 82 75 75 69 64 60 54 44 43 29 29 16 14 13 13 12 8 5 5 4 4</canonical_bands>
                <polymorphic_bands>200 125 82 75 75 69 64 60 54 44 29 29 16 14 13 13 12 8 5 5 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCGACTCTCTCCTGACCAT</pcr_primer_p1>
		<pcr_primer_p2>CAACTCGAGAATGATGTAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>ATCGACTCTCTCCTGACCATCAGGCGGTCCTAAACGCTCCACGTGTTGAGCGCCCTGTAATTATTTAATTAGGTATAATTAGAACATCAATCTAACTCACATGCTGATTATAATAATTCCATTTGTCACGAAATCGGCCGAATAGCTCCTCGCTGAGCGGCGTCGGAAGCACGACGGTCTCCATGAATTCCTGTAACTTCTGATGGCGAAATTTTAGAAAATCTTTTTTTAAATTTTCTTCTTACATCATTCTCGAGTTG</canonical_amplicon>
		<polymorphic_amplicon>ATCGACTCTCTCCTGACCATCAGGCGGTCCTAAACGCTCCACGTGTTGAGCGCCCTGTAATTATTTAATTAGGTATAATTAGAACATCAATCTAACTCACATGCTGATTATAATAATTCCATTTGTCACGAAATCGGCCGAATAGCTCCTCGCTGAGCGGCGTCGGAAGCWCGACGGTCTCCATGAATTCCTGTAACTTCTGATGGCGAAATTTTAGAAAATCTTTTTTTAAATTTTCTTCTTACATCATTCTCGAGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30450</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>368126</contig_pos>
        <strand></strand>
        <context>TCGAGTTGCG[T/C]CATTACCGCC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTAGAAAATCTTTTTTTAAATTTTCTTCTTACATCATTCTCGAGTTGCG</left_flank>
        <right_flank>CATTACCGCCGCCGATGCGAGCCGAATCATCGTTGGCGCTTCCAGCGGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCACTGTGACATCCGAAAAAAGGCGCCAACATCAAAAAATTGGCAAAAAACTAAATTTTCAGATTTGAAGACCTTATTTCGTGGCGAGACCCAATAATTTGGAAATTTCGGAAATTTTATGAGCAGACCCAACGCCTCCTTACCGTCGCTCCTGTCAAATCCAGTTTCTGCAGCGGCAATCTTGTAGAATCTGACCAAACTCTGAACACTTGTCGGATCATATCCAAATTCCCCTGATCGACTCTCTCCTGACCATCAGGCGGTCCTAAACGCTCCACGTGTTGAGCGCCCTGTAATTATTTAATTAGGTATAATTAGAACATCAATCTAACTCACATGCTGATTATAATAATTCCATTTGTCACGAAATCGGCCGAATAGCTCCTCGCTGAGCGGCGTCGGAAGCACGACGGTCTCCATGAATTCCTGTAACTTCTGATGGCGAAATTTTAGAAAATCTTTTTTTAAATTTTCTTCTTACATCATTCTCGAGTTGCGTCATTACCGCCGCCGATGCGAGCCGAATCATCGTTGGCGCTTCCAGCGGAACATCCGCCGTATGTGACATTTTTGCGATTTCAGTCTGGAAATTTTTTGGTTTTTAGGGATTATTAAAAGGTTTTAGACACCAAAAACAGCGAGTGAATCAATAGAAAATCGGGAGGGACTGGTGATTTACAAGGAGAAGGGATATAAGGAAATAGGAAGAATTGGCGGACAAGGAGAGCGAGCGAGAGAGATAGAATCGAAAAGTGCAAGTTTCGGTGGCCCACTTTTTTAATGTGACTGGTTTTAGGTGATAAAAACAGATGGGAAAAATACGGCGGTTTGATTAGATTGAGAGGATTTTCGCGCGGTGCTTTGAGAAGAGGAGAGAGAGAGAGAGAGACGCAGAGAAAAGTGGTCTGCTAATTATTTGGCAGGCCAACGTATGAAACATTAGCAGACCCAAATGTCAAGTTTCCAAACATTAGCAGACCCAAATTCCACGTTTTCAAG</canonical>
            <polymorphic>TCCACTGTGACATCCGAAAAAAGGCGCCAACATCAAAAAATTGGCAAAAAACTAAATTTTCAGATTTGAAGACCTTATTTCGTGGCGAGACCCAATAATTTGGAAATTTCGGAAATTTTATGAGCAGACCCAACGCCTCCTTACCGTCGCTCCTGTCAAATCCAGTTTCTGCAGCGGCAATCTTGTAGAATCTGACCAAACTCTGAACACTTGTCGGATCATATCCAAATTCCCCTGATCGACTCTCTCCTGACCATCAGGCGGTCCTAAACGCTCCACGTGTTGAGCGCCCTGTAATTATTTAATTAGGTATAATTAGAACATCAATCTAACTCACATGCTGATTATAATAATTCCATTTGTCACGAAATCGGCCGAATAGCTCCTCGCTGAGCGGCGTCGGAAGCACGACGGTCTCCATGAATTCCTGTAACTTCTGATGGCGAAATTTTAGAAAATCTTTTTTTAAATTTTCTTCTTACATCATTCTCGAGTTGCGYCATTACCGCCGCCGATGCGAGCCGAATCATCGTTGGCGCTTCCAGCGGAACATCCGCCGTATGTGACATTTTTGCGATTTCAGTCTGGAAATTTTTTGGTTTTTAGGGATTATTAAAAGGTTTTAGACACCAAAAACAGCGAGTGAATCAATAGAAAATCGGGAGGGACTGGTGATTTACAAGGAGAAGGGATATAAGGAAATAGGAAGAATTGGCGGACAAGGAGAGCGAGCGAGAGAGATAGAATCGAAAAGTGCAAGTTTCGGTGGCCCACTTTTTTAATGTGACTGGTTTTAGGTGATAAAAACAGATGGGAAAAATACGGCGGTTTGATTAGATTGAGAGGATTTTCGCGCGGTGCTTTGAGAAGAGGAGAGAGAGAGAGAGAGACGCAGAGAAAAGTGGTCTGCTAATTATTTGGCAGGCCAACGTATGAAACATTAGCAGACCCAAATGTCAAGTTTCCAAACATTAGCAGACCCAAATTCCACGTTTTCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGAATTCCTGTAACTTCTGAT</pcr_primer_p1>
		<pcr_primer_p2>CCGATTTTCTATTGATTCACTC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CATGAATTCCTGTAACTTCTGATGGCGAAATTTTAGAAAATCTTTTTTTAAATTTTCTTCTTACATCATTCTCGAGTTGCGTCATTACCGCCGCCGATGCGAGCCGAATCATCGTTGGCGCTTCCAGCGGAACATCCGCCGTATGTGACATTTTTGCGATTTCAGTCTGGAAATTTTTTGGTTTTTAGGGATTATTAAAAGGTTTTAGACACCAAAAACAGCGAGTGAATCAATAGAAAATCGG</canonical_amplicon>
		<polymorphic_amplicon>CATGAATTCCTGTAACTTCTGATGGCGAAATTTTAGAAAATCTTTTTTTAAATTTTCTTCTTACATCATTCTCGAGTTGCGYCATTACCGCCGCCGATGCGAGCCGAATCATCGTTGGCGCTTCCAGCGGAACATCCGCCGTATGTGACATTTTTGCGATTTCAGTCTGGAAATTTTTTGGTTTTTAGGGATTATTAAAAGGTTTTAGACACCAAAAACAGCGAGTGAATCAATAGAAAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30451</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>368518</contig_pos>
        <strand>-</strand>
        <context>AGAgagagac[A/G]cagagaaaag</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAGGATTTTCGCGCGGTGCTTTGAGAAGAGGAGAGAGAGAGAGAGAGAC</left_flank>
        <right_flank>CAGAGAAAAGTGGTCTGCTAATTATTTGGCAGGCCAACGTATGAAACATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCGGCGTCGGAAGCACGACGGTCTCCATGAATTCCTGTAACTTCTGATGGCGAAATTTTAGAAAATCTTTTTTTAAATTTTCTTCTTACATCATTCTCGAGTTGCGTCATTACCGCCGCCGATGCGAGCCGAATCATCGTTGGCGCTTCCAGCGGAACATCCGCCGTATGTGACATTTTTGCGATTTCAGTCTGGAAATTTTTTGGTTTTTAGGGATTATTAAAAGGTTTTAGACACCAAAAACAGCGAGTGAATCAATAGAAAATCGGGAGGGACTGGTGATTTACAAGGAGAAGGGATATAAGGAAATAGGAAGAATTGGCGGACAAGGAGAGCGAGCGAGAGAGATAGAATCGAAAAGTGCAAGTTTCGGTGGCCCACTTTTTTAATGTGACTGGTTTTAGGTGATAAAAACAGATGGGAAAAATACGGCGGTTTGATTAGATTGAGAGGATTTTCGCGCGGTGCTTTGAGAAGAGGAGAGAGAGAGAGAGAGACGCAGAGAAAAGTGGTCTGCTAATTATTTGGCAGGCCAACGTATGAAACATTAGCAGACCCAAATGTCAAGTTTCCAAACATTAGCAGACCCAAATTCCACGTTTTCAAGCATTAGCAGGCCAACGAGACGCAGAGAGTCAGAGAGCAGTAGTCTGCTAAATACGAATTCGCGTCTCGAGAGCCTAAAAGACTCCTGCTCCGTGGCAAGTTTCATCCGTCAAGTCTTAAATTTTTGCTATATTTCGAAAAAAAAATTGTGTCGAAATTAGAGTCAATCGTGAGGAAGAATTTTTCGAAAAACATTGAATAACGAAGAACAAGGATTTGAGATTTACATACGCATGAACAAAAGCTCTAGCGAATATATTGAAAAAATGACTTTTTTCGTTACGAGACCCAATAATTTCGAAAACCCGCAAAAAAAAAAACTTTTGGAAGGAAATGAGCAAAACAAAAACACATCTTTACTGCATTTTCGCGGCAAGAGAAACTAAACTACAG</canonical>
            <polymorphic>AGCGGCGTCGGAAGCACGACGGTCTCCATGAATTCCTGTAACTTCTGATGGCGAAATTTTAGAAAATCTTTTTTTAAATTTTCTTCTTACATCATTCTCGAGTTGCGTCATTACCGCCGCCGATGCGAGCCGAATCATCGTTGGCGCTTCCAGCGGAACATCCGCCGTATGTGACATTTTTGCGATTTCAGTCTGGAAATTTTTTGGTTTTTAGGGATTATTAAAAGGTTTTAGACACCAAAAACAGCGAGTGAATCAATAGAAAATCGGGAGGGACTGGTGATTTACAAGGAGAAGGGATATAAGGAAATAGGAAGAATTGGCGGACAAGGAGAGCGAGCGAGAGAGATAGAATCGAAAAGTGCAAGTTTCGGTGGCCCACTTTTTTAATGTGACTGGTTTTAGGTGATAAAAACAGATGGGAAAAATACGGCGGTTTGATTAGATTGAGAGGATTTTCGCGCGGTGCTTTGAGAAGAGGAGAGAGAGAGAGAGAGACRCAGAGAAAAGTGGTCTGCTAATTATTTGGCAGGCCAACGTATGAAACATTAGCAGACCCAAATGTCAAGTTTCCAAACATTAGCAGACCCAAATTCCACGTTTTCAAGCATTAGCAGGCCAACGAGACGCAGAGAGTCAGAGAGCAGTAGTCTGCTAAATACGAATTCGCGTCTCGAGAGCCTAAAAGACTCCTGCTCCGTGGCAAGTTTCATCCGTCAAGTCTTAAATTTTTGCTATATTTCGAAAAAAAAATTGTGTCGAAATTAGAGTCAATCGTGAGGAAGAATTTTTCGAAAAACATTGAATAACGAAGAACAAGGATTTGAGATTTACATACGCATGAACAAAAGCTCTAGCGAATATATTGAAAAAATGACTTTTTTCGTTACGAGACCCAATAATTTCGAAAACCCGCAAAAAAAAAAACTTTTGGAAGGAAATGAGCAAAACAAAAACACATCTTTACTGCATTTTCGCGGCAAGAGAAACTAAACTACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATAAAAACAGATGGGAAAAATA</pcr_primer_p1>
		<pcr_primer_p2>TAGCAGACTACTGCTCTCTGACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATAAAAACAGATGGGAAAAATACGGCGGTTTGATTAGATTGAGAGGATTTTCGCGCGGTGCTTTGAGAAGAGGAGAGAGAGAGAGAGAGACGCAGAGAAAAGTGGTCTGCTAATTATTTGGCAGGCCAACGTATGAAACATTAGCAGACCCAAATGTCAAGTTTCCAAACATTAGCAGACCCAAATTCCACGTTTTCAAGCATTAGCAGGCCAACGAGACGCAGAGAGTCAGAGAGCAGTAGTCTGCTA</canonical_amplicon>
		<polymorphic_amplicon>GATAAAAACAGATGGGAAAAATACGGCGGTTTGATTAGATTGAGAGGATTTTCGCGCGGTGCTTTGAGAAGAGGAGAGAGAGAGAGAGAGACRCAGAGAAAAGTGGTCTGCTAATTATTTGGCAGGCCAACGTATGAAACATTAGCAGACCCAAATGTCAAGTTTCCAAACATTAGCAGACCCAAATTCCACGTTTTCAAGCATTAGCAGGCCAACGAGACGCAGAGAGTCAGAGAGCAGTAGTCTGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30452</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>408232</contig_pos>
        <strand></strand>
        <context>GTGTTGGCGT[C/T]GGATCAGGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACAGTAACCGTTTTTCGATTAAAAGATGAGCGAGTGGTAGTGTTGGCGT</left_flank>
        <right_flank>GGATCAGGAGTGGAGGTGGGAAAACAGGAGAATTCAAAAAATTTGATTTT</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACACTGGCAGCACAGAATCGAGTGGTTTCAGCAGTCACAGGGACTAAAATTGTAAGGATTTTTGAGAAAAAATTTATGAAAAAACGTTTTTTTCAGCTTTTTTTTTTCGAAAATTTCGATTTTCAGCCTAACCGCGGAAATTGAAAAAAAAAACCAAAAAATAGCAGAAAAATTTGAAAAATTTGGAAATTTTAAAAATCTGAAAATTGCGAGGCAAAAAATGTTTTTTTTCTGAAAATATCGATTTTCAGCCAAACCCAGACTACTCCTCTGATATTCTAACGCCTCTCCAAATGTGGTACGTCCAATCCTGCCTTCCGAATTTTTATTTTCCCGCCAAACCAATGGAAACTCCTGGAGCCGGACATTGGACACCGCTATACACGTCTCTACAGCACGGAATCAGTACAAATCGCTTTGAGACCCTTGTATTCGATTATCGTGGGCCTACAGTAACCGTTTTTCGATTAAAAGATGAGCGAGTGGTAGTGTTGGCGTCGGATCAGGAGTGGAGGTGGGAAAACAGGAGAATTCAAAAAATTTGATTTTTCAGATTTTCGAAAATTTCAAAACTCCCGAAAATCATAAAATTCCGAAAAATATGAAAATTCCGAATATCTGAAAATTTGAAAATCTCGGAATTTCGAAATTCTCAAGGTTTTTCAAATTCGGAAAATCTCAAAATTCCATAAATTTCGAAAAATCCAAATATCTGAAAATTGTGAAAATCTTAAAATTTTGGAAATTTCGTAAATCCAAAAAATCTAAAAACCCCAAAAACCGAATATTCCGAAATTTTGAAAAGGAAATTAAGATGTAAGAGGAAATGAGTTTCTTTTTTTAAAATACGCTTTCTTTAAAGCTTAAAATGTGACAAAGGACCTTAAAGAGCCAAAAATGTGAACAAAAAACGGAAAAAAAAATGTTTTTTGGAAAAGTTTGAAAATTCCAAAAATCTAAGAATCCCAAAATCTGAAAAAAAGTTTAAATCCGATTTTC</canonical>
            <polymorphic>CACACTGGCAGCACAGAATCGAGTGGTTTCAGCAGTCACAGGGACTAAAATTGTAAGGATTTTTGAGAAAAAATTTATGAAAAAACGTTTTTTTCAGCTTTTTTTTTTCGAAAATTTCGATTTTCAGCCTAACCGCGGAAATTGAAAAAAAAAACCAAAAAATAGCAGAAAAATTTGAAAAATTTGGAAATTTTAAAAATCTGAAAATTGCGAGGCAAAAAATGTTTTTTTTCTGAAAATATCGATTTTCAGCCAAACCCAGACTACTCCTCTGATATTCTAACGCCTCTCCAAATGTGGTACGTCCAATCCTGCCTTCCGAATTTTTATTTTCCCGCCAAACCAATGGAAACTCCTGGAGCCGGACATTGGACACCGCTATACACGTCTCTACAGCACGGAATCAGTACAAATCGCTTTGAGACCCTTGTATTCGATTATCGTGGGCCTACAGTAACCGTTTTTCGATTAAAAGATGAGCGAGTGGTAGTGTTGGCGTYGGATCAGGAGTGGAGGTGGGAAAACAGGAGAATTCAAAAAATTTGATTTTTCAGATTTTCGAAAATTTCAAAACTCCCGAAAATCATAAAATTCCGAAAAATATGAAAATTCCGAATATCTGAAAATTTGAAAATCTCGGAATTTCGAAATTCTCAAGGTTTTTCAAATTCGGAAAATCTCAAAATTCCATAAATTTCGAAAAATCCAAATATCTGAAAATTGTGAAAATCTTAAAATTTTGGAAATTTCGTAAATCCAAAAAATCTAAAAACCCCAAAAACCGAATATTCCGAAATTTTGAAAAGGAAATTAAGATGTAAGAGGAAATGAGTTTCTTTTTTTAAAATACGCTTTCTTTAAAGCTTAAAATGTGACAAAGGACCTTAAAGAGCCAAAAATGTGAACAAAAAACGGAAAAAAAAATGTTTTTTGGAAAAGTTTGAAAATTCCAAAAATCTAAGAATCCCAAAATCTGAAAAAAAGTTTAAATCCGATTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>202 183 181 77 52 47 43 42 39 33 32 18 18 18 8 7</canonical_bands>
                <polymorphic_bands>233 202 183 77 47 43 42 39 33 32 18 18 18 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCCTACAGTAACCGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAACTCATTTCCTCTTACATCTT</pcr_primer_p2>
		<pcr_amplicon_size>391</pcr_amplicon_size>
		<canonical_amplicon>GGCCTACAGTAACCGTTTTTCGATTAAAAGATGAGCGAGTGGTAGTGTTGGCGTCGGATCAGGAGTGGAGGTGGGAAAACAGGAGAATTCAAAAAATTTGATTTTTCAGATTTTCGAAAATTTCAAAACTCCCGAAAATCATAAAATTCCGAAAAATATGAAAATTCCGAATATCTGAAAATTTGAAAATCTCGGAATTTCGAAATTCTCAAGGTTTTTCAAATTCGGAAAATCTCAAAATTCCATAAATTTCGAAAAATCCAAATATCTGAAAATTGTGAAAATCTTAAAATTTTGGAAATTTCGTAAATCCAAAAAATCTAAAAACCCCAAAAACCGAATATTCCGAAATTTTGAAAAGGAAATTAAGATGTAAGAGGAAATGAGTTTC</canonical_amplicon>
		<polymorphic_amplicon>GGCCTACAGTAACCGTTTTTCGATTAAAAGATGAGCGAGTGGTAGTGTTGGCGTYGGATCAGGAGTGGAGGTGGGAAAACAGGAGAATTCAAAAAATTTGATTTTTCAGATTTTCGAAAATTTCAAAACTCCCGAAAATCATAAAATTCCGAAAAATATGAAAATTCCGAATATCTGAAAATTTGAAAATCTCGGAATTTCGAAATTCTCAAGGTTTTTCAAATTCGGAAAATCTCAAAATTCCATAAATTTCGAAAAATCCAAATATCTGAAAATTGTGAAAATCTTAAAATTTTGGAAATTTCGTAAATCCAAAAAATCTAAAAACCCCAAAAACCGAATATTCCGAAATTTTGAAAAGGAAATTAAGATGTAAGAGGAAATGAGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30453</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>455561</contig_pos>
        <strand>+</strand>
        <context>AACTTATTTT[C/T]AGCACTATTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACGAGGTCGGTAGCTTCTGAGCTGAAAATTTTAGTTATTAACTTATTTT</left_flank>
        <right_flank>AGCACTATTATCTACCGTTTCTCCTTTTTTGCTCCCTGGACCTTCTATTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTATTAATTTAGCTTTTCACTATTAGTTTTTATCATCATTCTTATAATAAATGAATGGAGTGGTGGAATGGGGCCTTCACTGTCAACTTTGAGCTCAATTATCTCGATTTCGGTACAAGCTATCTAAAAGTGGTTAACTGATAAAATGTCTGTGATGTTATGATGAACATTTTATTAGTTAACAACTTCTTCATATGTCCGACAAGAACCGAGAAAAATGGCTCAAAGTTCACAATAAGAGCGCCCTTCTATTACAGGTTTTAGACTAGTTATTGGAAGTTTGAAAAAATGAAAATCGTTTTCATTGGGTACTGCAGAACAAACTCACCTTTCACGTTTTGTGCCTGCAGAGCTGGTGGCTCATCGACGGAGCAGCGTCGGTCCAAGTGCTTGGTGATGGGATTGAATGGCCCCTTGGTGTCTGCTGGGTCGCGCCAAGAAGGGTATGACGAGGTCGGTAGCTTCTGAGCTGAAAATTTTAGTTATTAACTTATTTTCAGCACTATTATCTACCGTTTCTCCTTTTTTGCTCCCTGGACCTTCTATTTGGCTTTGCGGCAGGTAATCAACTGGATGGGTTTGCGATGTTGACGAATGTGCTTGGGCTGCCGATAGACGACGATTGGATTGGACCTGAAAAGTCATATCTTTTTTGAATTTTAAGTTTCATAAATCCACAAAAATCTAAAAATTGAAATTCATTGGAAGAAGCACAAAAAAAAGTGATTTTTTGCCTAAAAATTCGTTCTTTTTAATTCTAAAAATGTGTCTATTTGAAAATATTCGATCCGTTTTTTAATGATTTTCAAATATGTTAAACCAATACTAGACTCATATTTCTCTGAGAAAAATTTTAATTTTAAAAACAGTCCGTCTATTTTCAAATGATGTCAAGAAGGTCTTCCGGAAAAAAAATTTTTATAATCTTTTTTTTGTGATTTTCAACTTTTTCTTTTTACTATTTCATCTTTTGAAAATAAAAAAAAAAGTACAAAAAA</canonical>
            <polymorphic>TGGTATTAATTTAGCTTTTCACTATTAGTTTTTATCATCATTCTTATAATAAATGAATGGAGTGGTGGAATGGGGCCTTCACTGTCAACTTTGAGCTCAATTATCTCGATTTCGGTACAAGCTATCTAAAAGTGGTTAACTGATAAAATGTCTGTGATGTTATGATGAACATTTTATTAGTTAACAACTTCTTCATATGTCCGACAAGAACCGAGAAAAATGGCTCAAAGTTCACAATAAGAGCGCCCTTCTATTACAGGTTTTAGACTAGTTATTGGAAGTTTGAAAAAATGAAAATCGTTTTCATTGGGTACTGCAGAACAAACTCACCTTTCACGTTTTGTGCCTGCAGAGCTGGTGGCTCATCGACGGAGCAGCGTCGGTCCAAGTGCTTGGTGATGGGATTGAATGGCCCCTTGGTGTCTGCTGGGTCGCGCCAAGAAGGGTATGACGAGGTCGGTAGCTTCTGAGCTGAAAATTTTAGTTATTAACTTATTTTYAGCACTATTATCTACCGTTTCTCCTTTTTTGCTCCCTGGACCTTCTATTTGGCTTTGCGGCAGGTAATCAACTGGATGGGTTTGCGATGTTGACGAATGTGCTTGGGCTGCCGATAGACGACGATTGGATTGGACCTGAAAAGTCATATCTTTTTTGAATTTTAAGTTTCATAAATCCACAAAAATCTAAAAATTGAAATTCATTGGAAGAAGCACAAAAAAAAGTGATTTTTTGCCTAAAAATTCGTTCTTTTTAATTCTAAAAATGTGTCTATTTGAAAATATTCGATCCGTTTTTTAATGATTTTCAAATATGTTAAACCAATACTAGACTCATATTTCTCTGAGAAAAATTTTAATTTTAAAAACAGTCCGTCTATTTTCAAATGATGTCAAGAAGGTCTTCCGGAAAAAAAATTTTTATAATCTTTTTTTTGTGATTTTCAACTTTTTCTTTTTACTATTTCATCTTTTGAAAATAAAAAAAAAAGTACAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAGGGTATGACGAGGTC</pcr_primer_p1>
		<pcr_primer_p2>AGATTTTTGTGGATTTATGAAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAAGGGTATGACGAGGTCGGTAGCTTCTGAGCTGAAAATTTTAGTTATTAACTTATTTTCAGCACTATTATCTACCGTTTCTCCTTTTTTGCTCCCTGGACCTTCTATTTGGCTTTGCGGCAGGTAATCAACTGGATGGGTTTGCGATGTTGACGAATGTGCTTGGGCTGCCGATAGACGACGATTGGATTGGACCTGAAAAGTCATATCTTTTTTGAATTTTAAGTTTCATAAATCCACAAAAATCT</canonical_amplicon>
		<polymorphic_amplicon>AAGAAGGGTATGACGAGGTCGGTAGCTTCTGAGCTGAAAATTTTAGTTATTAACTTATTTTYAGCACTATTATCTACCGTTTCTCCTTTTTTGCTCCCTGGACCTTCTATTTGGCTTTGCGGCAGGTAATCAACTGGATGGGTTTGCGATGTTGACGAATGTGCTTGGGCTGCCGATAGACGACGATTGGATTGGACCTGAAAAGTCATATCTTTTTTGAATTTTAAGTTTCATAAATCCACAAAAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30454</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>461816</contig_pos>
        <strand></strand>
        <context>GGCGAGCGGT[T/A]TCAGCTCACT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGT</left_flank>
        <right_flank>TCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGTTTTCCGTTTTCCGCCCGGTTTTTAGAGATTTTTTTCCGTTTCCGTTTCCGCGGAAAACATATTTACGATTCCGTTTCCATTTTCCGTAAAAATCTCCATTTTTTACAGCGGAAACGGAAAAAAAATGTAAAAAACAACGAAAACATCAAACTGGCTTGAAAAAAGCATGCAAAGTGATGCAAATATGGTCTTTCAACGTTGAAAAGTCTAAATATTTTTGTTTGAAGGGAAAAAAATCCTGAAAATATATACGAAATATAGAAATTTCCGTTTCCGCTTTAGTTTTCCGTTTTCCGCCCAATTTTTAAAGTTTTTTTTTTCCGTTTCCGTTTCCGCGGAAAAAATTTCCTTTCCGTTTCCGTTTTCCGTGTTTCGGAAAAATGCGTTTCCTCCAATCACTGCTATGTATTAGTTAAGGCTTGTGGGTATTGNGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTTTCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCCGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTTAGTCAAAGTAGATCGTAGACCGTAGTTTTTGTTTGATGTTTTGTGAAAATTTTAACATTTTCCAAAAAACAAAATCCAAAAAACACCAGCTTCTCTACAAACAGCGAGCGGTGCCCGGATTTTTGCAAGTTCGGTTTTTTTTCA</canonical>
            <polymorphic>CCGTTTTCCGTTTTCCGCCCGGTTTTTAGAGATTTTTTTCCGTTTCCGTTTCCGCGGAAAACATATTTACGATTCCGTTTCCATTTTCCGTAAAAATCTCCATTTTTTACAGCGGAAACGGAAAAAAAATGTAAAAAACAACGAAAACATCAAACTGGCTTGAAAAAAGCATGCAAAGTGATGCAAATATGGTCTTTCAACGTTGAAAAGTCTAAATATTTTTGTTTGAAGGGAAAAAAATCCTGAAAATATATACGAAATATAGAAATTTCCGTTTCCGCTTTAGTTTTCCGTTTTCCGCCCAATTTTTAAAGTTTTTTTTTTCCGTTTCCGTTTCCGCGGAAAAAATTTCCTTTCCGTTTCCGTTTTCCGTGTTTCGGAAAAATGCGTTTCCTCCAATCACTGCTATGTATTAGTTAAGGCTTGTGGGTATTGNGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTWTCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCCGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTTAGTCAAAGTAGATCGTAGACCGTAGTTTTTGTTTGATGTTTTGTGAAAATTTTAACATTTTCCAAAAAACAAAATCCAAAAAACACCAGCTTCTCTACAAACAGCGAGCGGTGCCCGGATTTTTGCAAGTTCGGTTTTTTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAAAACGGCAAAAAGTTAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGCTCACATGTTCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>688</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCCGGAAAGAACATGTGAGCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>TWTCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCCGGAAAGAACATGTGAGCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30455</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>461828</contig_pos>
        <strand>+</strand>
        <context>CAGCTCACTC[A/G]AAGGCGGTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTTTCAGCTCACTC</left_flank>
        <right_flank>AAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCCGGAAAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCGCCCGGTTTTTAGAGATTTTTTTCCGTTTCCGTTTCCGCGGAAAACATATTTACGATTCCGTTTCCATTTTCCGTAAAAATCTCCATTTTTTACAGCGGAAACGGAAAAAAAATGTAAAAAACAACGAAAACATCAAACTGGCTTGAAAAAAGCATGCAAAGTGATGCAAATATGGTCTTTCAACGTTGAAAAGTCTAAATATTTTTGTTTGAAGGGAAAAAAATCCTGAAAATATATACGAAATATAGAAATTTCCGTTTCCGCTTTAGTTTTCCGTTTTCCGCCCAATTTTTAAAGTTTTTTTTTTCCGTTTCCGTTTCCGCGGAAAAAATTTCCTTTCCGTTTCCGTTTTCCGTGTTTCGGAAAAATGCGTTTCCTCCAATCACTGCTATGTATTAGTTAAGGCTTGTGGGTATTGNGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTTTCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCCGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTTAGTCAAAGTAGATCGTAGACCGTAGTTTTTGTTTGATGTTTTGTGAAAATTTTAACATTTTCCAAAAAACAAAATCCAAAAAACACCAGCTTCTCTACAAACAGCGAGCGGTGCCCGGATTTTTGCAAGTTCGGTTTTTTTTCAGGTTCTATTCTA</canonical>
            <polymorphic>TTCCGCCCGGTTTTTAGAGATTTTTTTCCGTTTCCGTTTCCGCGGAAAACATATTTACGATTCCGTTTCCATTTTCCGTAAAAATCTCCATTTTTTACAGCGGAAACGGAAAAAAAATGTAAAAAACAACGAAAACATCAAACTGGCTTGAAAAAAGCATGCAAAGTGATGCAAATATGGTCTTTCAACGTTGAAAAGTCTAAATATTTTTGTTTGAAGGGAAAAAAATCCTGAAAATATATACGAAATATAGAAATTTCCGTTTCCGCTTTAGTTTTCCGTTTTCCGCCCAATTTTTAAAGTTTTTTTTTTCCGTTTCCGTTTCCGCGGAAAAAATTTCCTTTCCGTTTCCGTTTTCCGTGTTTCGGAAAAATGCGTTTCCTCCAATCACTGCTATGTATTAGTTAAGGCTTGTGGGTATTGNGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTTTCAGCTCACTCRAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCCGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTTAGTCAAAGTAGATCGTAGACCGTAGTTTTTGTTTGATGTTTTGTGAAAATTTTAACATTTTCCAAAAAACAAAATCCAAAAAACACCAGCTTCTCTACAAACAGCGAGCGGTGCCCGGATTTTTGCAAGTTCGGTTTTTTTTCAGGTTCTATTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAAAACGGCAAAAAGTTAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGCTCACATGTTCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>688</pcr_amplicon_size>
		<canonical_amplicon>CAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCCGGAAAGAACATGTGAGCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>CRAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCCGGAAAGAACATGTGAGCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30456</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>461842</contig_pos>
        <strand>+</strand>
        <context>GCGGTAATAC[A/G]GTTATCCACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTCGTTCGGCTGCGGCGAGCGGTTTCAGCTCACTCAAAGGCGGTAATAC</left_flank>
        <right_flank>GTTATCCACAGAATCAGGGGATAACGCCGGAAAGAACATGTGAGCAAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAGATTTTTTTCCGTTTCCGTTTCCGCGGAAAACATATTTACGATTCCGTTTCCATTTTCCGTAAAAATCTCCATTTTTTACAGCGGAAACGGAAAAAAAATGTAAAAAACAACGAAAACATCAAACTGGCTTGAAAAAAGCATGCAAAGTGATGCAAATATGGTCTTTCAACGTTGAAAAGTCTAAATATTTTTGTTTGAAGGGAAAAAAATCCTGAAAATATATACGAAATATAGAAATTTCCGTTTCCGCTTTAGTTTTCCGTTTTCCGCCCAATTTTTAAAGTTTTTTTTTTCCGTTTCCGTTTCCGCGGAAAAAATTTCCTTTCCGTTTCCGTTTTCCGTGTTTCGGAAAAATGCGTTTCCTCCAATCACTGCTATGTATTAGTTAAGGCTTGTGGGTATTGNGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTTTCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCCGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTTAGTCAAAGTAGATCGTAGACCGTAGTTTTTGTTTGATGTTTTGTGAAAATTTTAACATTTTCCAAAAAACAAAATCCAAAAAACACCAGCTTCTCTACAAACAGCGAGCGGTGCCCGGATTTTTGCAAGTTCGGTTTTTTTTCAGGTTCTATTCTATATATTCTTCACGT</canonical>
            <polymorphic>TAGAGATTTTTTTCCGTTTCCGTTTCCGCGGAAAACATATTTACGATTCCGTTTCCATTTTCCGTAAAAATCTCCATTTTTTACAGCGGAAACGGAAAAAAAATGTAAAAAACAACGAAAACATCAAACTGGCTTGAAAAAAGCATGCAAAGTGATGCAAATATGGTCTTTCAACGTTGAAAAGTCTAAATATTTTTGTTTGAAGGGAAAAAAATCCTGAAAATATATACGAAATATAGAAATTTCCGTTTCCGCTTTAGTTTTCCGTTTTCCGCCCAATTTTTAAAGTTTTTTTTTTCCGTTTCCGTTTCCGCGGAAAAAATTTCCTTTCCGTTTCCGTTTTCCGTGTTTCGGAAAAATGCGTTTCCTCCAATCACTGCTATGTATTAGTTAAGGCTTGTGGGTATTGNGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTTTCAGCTCACTCAAAGGCGGTAATACRGTTATCCACAGAATCAGGGGATAACGCCGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTTAGTCAAAGTAGATCGTAGACCGTAGTTTTTGTTTGATGTTTTGTGAAAATTTTAACATTTTCCAAAAAACAAAATCCAAAAAACACCAGCTTCTCTACAAACAGCGAGCGGTGCCCGGATTTTTGCAAGTTCGGTTTTTTTTCAGGTTCTATTCTATATATTCTTCACGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAAAACGGCAAAAAGTTAAA</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTGCTCACATGTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>689</pcr_amplicon_size>
		<canonical_amplicon>CGGTTATCCACAGAATCAGGGGATAACGCCGGAAAGAACATGTGAGCAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>CRGTTATCCACAGAATCAGGGGATAACGCCGGAAAGAACATGTGAGCAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30457</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>461870</contig_pos>
        <strand>+</strand>
        <context>GGGATAACGC[A/C]RGAAAGAACA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGC</left_flank>
        <right_flank>GGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGAAAACATATTTACGATTCCGTTTCCATTTTCCGTAAAAATCTCCATTTTTTACAGCGGAAACGGAAAAAAAATGTAAAAAACAACGAAAACATCAAACTGGCTTGAAAAAAGCATGCAAAGTGATGCAAATATGGTCTTTCAACGTTGAAAAGTCTAAATATTTTTGTTTGAAGGGAAAAAAATCCTGAAAATATATACGAAATATAGAAATTTCCGTTTCCGCTTTAGTTTTCCGTTTTCCGCCCAATTTTTAAAGTTTTTTTTTTCCGTTTCCGTTTCCGCGGAAAAAATTTCCTTTCCGTTTCCGTTTTCCGTGTTTCGGAAAAATGCGTTTCCTCCAATCACTGCTATGTATTAGTTAAGGCTTGTGGGTATTGNGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTTTCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCCGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTTAGTCAAAGTAGATCGTAGACCGTAGTTTTTGTTTGATGTTTTGTGAAAATTTTAACATTTTCCAAAAAACAAAATCCAAAAAACACCAGCTTCTCTACAAACAGCGAGCGGTGCCCGGATTTTTGCAAGTTCGGTTTTTTTTCAGGTTCTATTCTATATATTCTTCACGTTCAATGTTATTTCTGCATTCCTCTATTC</canonical>
            <polymorphic>CGGAAAACATATTTACGATTCCGTTTCCATTTTCCGTAAAAATCTCCATTTTTTACAGCGGAAACGGAAAAAAAATGTAAAAAACAACGAAAACATCAAACTGGCTTGAAAAAAGCATGCAAAGTGATGCAAATATGGTCTTTCAACGTTGAAAAGTCTAAATATTTTTGTTTGAAGGGAAAAAAATCCTGAAAATATATACGAAATATAGAAATTTCCGTTTCCGCTTTAGTTTTCCGTTTTCCGCCCAATTTTTAAAGTTTTTTTTTTCCGTTTCCGTTTCCGCGGAAAAAATTTCCTTTCCGTTTCCGTTTTCCGTGTTTCGGAAAAATGCGTTTCCTCCAATCACTGCTATGTATTAGTTAAGGCTTGTGGGTATTGNGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTTTCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCMGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTTAGTCAAAGTAGATCGTAGACCGTAGTTTTTGTTTGATGTTTTGTGAAAATTTTAACATTTTCCAAAAAACAAAATCCAAAAAACACCAGCTTCTCTACAAACAGCGAGCGGTGCCCGGATTTTTGCAAGTTCGGTTTTTTTTCAGGTTCTATTCTATATATTCTTCACGTTCAATGTTATTTCTGCATTCCTCTATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 418 83</canonical_bands>
                <polymorphic_bands>917 83</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAAAACGGCAAAAAGTTAAA</pcr_primer_p1>
		<pcr_primer_p2>AAGACTTTTACTCGACTACTTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>968</pcr_amplicon_size>
		<canonical_amplicon>CCGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTT</canonical_amplicon>
		<polymorphic_amplicon>CMGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30458</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>461871</contig_pos>
        <strand>+</strand>
        <context>GGATAACGCM[A/G]GAAAGAACAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCC</left_flank>
        <right_flank>GAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAAAACATATTTACGATTCCGTTTCCATTTTCCGTAAAAATCTCCATTTTTTACAGCGGAAACGGAAAAAAAATGTAAAAAACAACGAAAACATCAAACTGGCTTGAAAAAAGCATGCAAAGTGATGCAAATATGGTCTTTCAACGTTGAAAAGTCTAAATATTTTTGTTTGAAGGGAAAAAAATCCTGAAAATATATACGAAATATAGAAATTTCCGTTTCCGCTTTAGTTTTCCGTTTTCCGCCCAATTTTTAAAGTTTTTTTTTTCCGTTTCCGTTTCCGCGGAAAAAATTTCCTTTCCGTTTCCGTTTTCCGTGTTTCGGAAAAATGCGTTTCCTCCAATCACTGCTATGTATTAGTTAAGGCTTGTGGGTATTGNGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTTTCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCCGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTTAGTCAAAGTAGATCGTAGACCGTAGTTTTTGTTTGATGTTTTGTGAAAATTTTAACATTTTCCAAAAAACAAAATCCAAAAAACACCAGCTTCTCTACAAACAGCGAGCGGTGCCCGGATTTTTGCAAGTTCGGTTTTTTTTCAGGTTCTATTCTATATATTCTTCACGTTCAATGTTATTTCTGCATTCCTCTATTCC</canonical>
            <polymorphic>GGAAAACATATTTACGATTCCGTTTCCATTTTCCGTAAAAATCTCCATTTTTTACAGCGGAAACGGAAAAAAAATGTAAAAAACAACGAAAACATCAAACTGGCTTGAAAAAAGCATGCAAAGTGATGCAAATATGGTCTTTCAACGTTGAAAAGTCTAAATATTTTTGTTTGAAGGGAAAAAAATCCTGAAAATATATACGAAATATAGAAATTTCCGTTTCCGCTTTAGTTTTCCGTTTTCCGCCCAATTTTTAAAGTTTTTTTTTTCCGTTTCCGTTTCCGCGGAAAAAATTTCCTTTCCGTTTCCGTTTTCCGTGTTTCGGAAAAATGCGTTTCCTCCAATCACTGCTATGTATTAGTTAAGGCTTGTGGGTATTGNGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTTTCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCCRGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTTAGTCAAAGTAGATCGTAGACCGTAGTTTTTGTTTGATGTTTTGTGAAAATTTTAACATTTTCCAAAAAACAAAATCCAAAAAACACCAGCTTCTCTACAAACAGCGAGCGGTGCCCGGATTTTTGCAAGTTCGGTTTTTTTTCAGGTTCTATTCTATATATTCTTCACGTTCAATGTTATTTCTGCATTCCTCTATTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>498 418 84</canonical_bands>
                <polymorphic_bands>916 84</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAAAACGGCAAAAAGTTAAA</pcr_primer_p1>
		<pcr_primer_p2>AAGACTTTTACTCGACTACTTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>968</pcr_amplicon_size>
		<canonical_amplicon>CGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTT</canonical_amplicon>
		<polymorphic_amplicon>CRGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30459</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>461908</contig_pos>
        <strand>+</strand>
        <context>CAAAAGGCCA[G/T]GAACYGTAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGGGGATAACGCCGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCA</left_flank>
        <right_flank>GAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCC</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATCTCCATTTTTTACAGCGGAAACGGAAAAAAAATGTAAAAAACAACGAAAACATCAAACTGGCTTGAAAAAAGCATGCAAAGTGATGCAAATATGGTCTTTCAACGTTGAAAAGTCTAAATATTTTTGTTTGAAGGGAAAAAAATCCTGAAAATATATACGAAATATAGAAATTTCCGTTTCCGCTTTAGTTTTCCGTTTTCCGCCCAATTTTTAAAGTTTTTTTTTTCCGTTTCCGTTTCCGCGGAAAAAATTTCCTTTCCGTTTCCGTTTTCCGTGTTTCGGAAAAATGCGTTTCCTCCAATCACTGCTATGTATTAGTTAAGGCTTGTGGGTATTGNGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTTTCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCCGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTTAGTCAAAGTAGATCGTAGACCGTAGTTTTTGTTTGATGTTTTGTGAAAATTTTAACATTTTCCAAAAAACAAAATCCAAAAAACACCAGCTTCTCTACAAACAGCGAGCGGTGCCCGGATTTTTGCAAGTTCGGTTTTTTTTCAGGTTCTATTCTATATATTCTTCACGTTCAATGTTATTTCTGCATTCCTCTATTCCATTGTCCATAAACATATTCGCATATACCAAATGAAGT</canonical>
            <polymorphic>AAAATCTCCATTTTTTACAGCGGAAACGGAAAAAAAATGTAAAAAACAACGAAAACATCAAACTGGCTTGAAAAAAGCATGCAAAGTGATGCAAATATGGTCTTTCAACGTTGAAAAGTCTAAATATTTTTGTTTGAAGGGAAAAAAATCCTGAAAATATATACGAAATATAGAAATTTCCGTTTCCGCTTTAGTTTTCCGTTTTCCGCCCAATTTTTAAAGTTTTTTTTTTCCGTTTCCGTTTCCGCGGAAAAAATTTCCTTTCCGTTTCCGTTTTCCGTGTTTCGGAAAAATGCGTTTCCTCCAATCACTGCTATGTATTAGTTAAGGCTTGTGGGTATTGNGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTTTCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCCGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAKGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTTAGTCAAAGTAGATCGTAGACCGTAGTTTTTGTTTGATGTTTTGTGAAAATTTTAACATTTTCCAAAAAACAAAATCCAAAAAACACCAGCTTCTCTACAAACAGCGAGCGGTGCCCGGATTTTTGCAAGTTCGGTTTTTTTTCAGGTTCTATTCTATATATTCTTCACGTTCAATGTTATTTCTGCATTCCTCTATTCCATTGTCCATAAACATATTCGCATATACCAAATGAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 393 78 27</canonical_bands>
                <polymorphic_bands>529 393 78</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAAAACGGCAAAAAGTTAAA</pcr_primer_p1>
		<pcr_primer_p2>AAGACTTTTACTCGACTACTTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>968</pcr_amplicon_size>
		<canonical_amplicon>ATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTT</canonical_amplicon>
		<polymorphic_amplicon>AKGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30460</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>461913</contig_pos>
        <strand>+</strand>
        <context>GGCCAKGAAC[C/T]GTAAAAARGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAACGCCGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAAC</left_flank>
        <right_flank>GTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCATTTTTTACAGCGGAAACGGAAAAAAAATGTAAAAAACAACGAAAACATCAAACTGGCTTGAAAAAAGCATGCAAAGTGATGCAAATATGGTCTTTCAACGTTGAAAAGTCTAAATATTTTTGTTTGAAGGGAAAAAAATCCTGAAAATATATACGAAATATAGAAATTTCCGTTTCCGCTTTAGTTTTCCGTTTTCCGCCCAATTTTTAAAGTTTTTTTTTTCCGTTTCCGTTTCCGCGGAAAAAATTTCCTTTCCGTTTCCGTTTTCCGTGTTTCGGAAAAATGCGTTTCCTCCAATCACTGCTATGTATTAGTTAAGGCTTGTGGGTATTGNGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTTTCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCCGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTTAGTCAAAGTAGATCGTAGACCGTAGTTTTTGTTTGATGTTTTGTGAAAATTTTAACATTTTCCAAAAAACAAAATCCAAAAAACACCAGCTTCTCTACAAACAGCGAGCGGTGCCCGGATTTTTGCAAGTTCGGTTTTTTTTCAGGTTCTATTCTATATATTCTTCACGTTCAATGTTATTTCTGCATTCCTCTATTCCATTGTCCATAAACATATTCGCATATACCAAATGAAGTACCGA</canonical>
            <polymorphic>CTCCATTTTTTACAGCGGAAACGGAAAAAAAATGTAAAAAACAACGAAAACATCAAACTGGCTTGAAAAAAGCATGCAAAGTGATGCAAATATGGTCTTTCAACGTTGAAAAGTCTAAATATTTTTGTTTGAAGGGAAAAAAATCCTGAAAATATATACGAAATATAGAAATTTCCGTTTCCGCTTTAGTTTTCCGTTTTCCGCCCAATTTTTAAAGTTTTTTTTTTCCGTTTCCGTTTCCGCGGAAAAAATTTCCTTTCCGTTTCCGTTTTCCGTGTTTCGGAAAAATGCGTTTCCTCCAATCACTGCTATGTATTAGTTAAGGCTTGTGGGTATTGNGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTTTCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCCGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACYGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTTAGTCAAAGTAGATCGTAGACCGTAGTTTTTGTTTGATGTTTTGTGAAAATTTTAACATTTTCCAAAAAACAAAATCCAAAAAACACCAGCTTCTCTACAAACAGCGAGCGGTGCCCGGATTTTTGCAAGTTCGGTTTTTTTTCAGGTTCTATTCTATATATTCTTCACGTTCAATGTTATTTCTGCATTCCTCTATTCCATTGTCCATAAACATATTCGCATATACCAAATGAAGTACCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>495 279 208 18</canonical_bands>
                <polymorphic_bands>513 279 208</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAAAACGGCAAAAAGTTAAA</pcr_primer_p1>
		<pcr_primer_p2>AAGACTTTTACTCGACTACTTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>968</pcr_amplicon_size>
		<canonical_amplicon>CCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTT</canonical_amplicon>
		<polymorphic_amplicon>CYGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30461</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>461921</contig_pos>
        <strand>+</strand>
        <context>ACYGTAAAAA[A/G]GCCGCGTTGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAA</left_flank>
        <right_flank>GCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTACAGCGGAAACGGAAAAAAAATGTAAAAAACAACGAAAACATCAAACTGGCTTGAAAAAAGCATGCAAAGTGATGCAAATATGGTCTTTCAACGTTGAAAAGTCTAAATATTTTTGTTTGAAGGGAAAAAAATCCTGAAAATATATACGAAATATAGAAATTTCCGTTTCCGCTTTAGTTTTCCGTTTTCCGCCCAATTTTTAAAGTTTTTTTTTTCCGTTTCCGTTTCCGCGGAAAAAATTTCCTTTCCGTTTCCGTTTTCCGTGTTTCGGAAAAATGCGTTTCCTCCAATCACTGCTATGTATTAGTTAAGGCTTGTGGGTATTGNGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTTTCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCCGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTTAGTCAAAGTAGATCGTAGACCGTAGTTTTTGTTTGATGTTTTGTGAAAATTTTAACATTTTCCAAAAAACAAAATCCAAAAAACACCAGCTTCTCTACAAACAGCGAGCGGTGCCCGGATTTTTGCAAGTTCGGTTTTTTTTCAGGTTCTATTCTATATATTCTTCACGTTCAATGTTATTTCTGCATTCCTCTATTCCATTGTCCATAAACATATTCGCATATACCAAATGAAGTACCGAGGCAGGTT</canonical>
            <polymorphic>TTTACAGCGGAAACGGAAAAAAAATGTAAAAAACAACGAAAACATCAAACTGGCTTGAAAAAAGCATGCAAAGTGATGCAAATATGGTCTTTCAACGTTGAAAAGTCTAAATATTTTTGTTTGAAGGGAAAAAAATCCTGAAAATATATACGAAATATAGAAATTTCCGTTTCCGCTTTAGTTTTCCGTTTTCCGCCCAATTTTTAAAGTTTTTTTTTTCCGTTTCCGTTTCCGCGGAAAAAATTTCCTTTCCGTTTCCGTTTTCCGTGTTTCGGAAAAATGCGTTTCCTCCAATCACTGCTATGTATTAGTTAAGGCTTGTGGGTATTGNGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTTTCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCCGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAARGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTTAGTCAAAGTAGATCGTAGACCGTAGTTTTTGTTTGATGTTTTGTGAAAATTTTAACATTTTCCAAAAAACAAAATCCAAAAAACACCAGCTTCTCTACAAACAGCGAGCGGTGCCCGGATTTTTGCAAGTTCGGTTTTTTTTCAGGTTCTATTCTATATATTCTTCACGTTCAATGTTATTTCTGCATTCCTCTATTCCATTGTCCATAAACATATTCGCATATACCAAATGAAGTACCGAGGCAGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>503 271 208 18</canonical_bands>
                <polymorphic_bands>521 271 208</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>472 385 114 18 11</canonical_bands>
                <polymorphic_bands>472 385 132 11</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>264 160 128 73 70 70 63 53 26 22 19 18 18 11 5</canonical_bands>
                <polymorphic_bands>264 160 128 73 70 70 63 53 44 22 19 18 11 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAAAACGGCAAAAAGTTAAA</pcr_primer_p1>
		<pcr_primer_p2>AAGACTTTTACTCGACTACTTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>968</pcr_amplicon_size>
		<canonical_amplicon>AGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTT</canonical_amplicon>
		<polymorphic_amplicon>ARGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30462</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>461947</contig_pos>
        <strand>+</strand>
        <context>TTTTTCCATA[G/T]GCTYCGCCCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATA</left_flank>
        <right_flank>GCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAAAACAACGAAAACATCAAACTGGCTTGAAAAAAGCATGCAAAGTGATGCAAATATGGTCTTTCAACGTTGAAAAGTCTAAATATTTTTGTTTGAAGGGAAAAAAATCCTGAAAATATATACGAAATATAGAAATTTCCGTTTCCGCTTTAGTTTTCCGTTTTCCGCCCAATTTTTAAAGTTTTTTTTTTCCGTTTCCGTTTCCGCGGAAAAAATTTCCTTTCCGTTTCCGTTTTCCGTGTTTCGGAAAAATGCGTTTCCTCCAATCACTGCTATGTATTAGTTAAGGCTTGTGGGTATTGNGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTTTCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCCGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTTAGTCAAAGTAGATCGTAGACCGTAGTTTTTGTTTGATGTTTTGTGAAAATTTTAACATTTTCCAAAAAACAAAATCCAAAAAACACCAGCTTCTCTACAAACAGCGAGCGGTGCCCGGATTTTTGCAAGTTCGGTTTTTTTTCAGGTTCTATTCTATATATTCTTCACGTTCAATGTTATTTCTGCATTCCTCTATTCCATTGTCCATAAACATATTCGCATATACCAAATGAAGTACCGAGGCAGGTTTGGTATCATTTTCTTTGGGATTTTGG</canonical>
            <polymorphic>TAAAAAACAACGAAAACATCAAACTGGCTTGAAAAAAGCATGCAAAGTGATGCAAATATGGTCTTTCAACGTTGAAAAGTCTAAATATTTTTGTTTGAAGGGAAAAAAATCCTGAAAATATATACGAAATATAGAAATTTCCGTTTCCGCTTTAGTTTTCCGTTTTCCGCCCAATTTTTAAAGTTTTTTTTTTCCGTTTCCGTTTCCGCGGAAAAAATTTCCTTTCCGTTTCCGTTTTCCGTGTTTCGGAAAAATGCGTTTCCTCCAATCACTGCTATGTATTAGTTAAGGCTTGTGGGTATTGNGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTTTCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCCGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAKGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTTAGTCAAAGTAGATCGTAGACCGTAGTTTTTGTTTGATGTTTTGTGAAAATTTTAACATTTTCCAAAAAACAAAATCCAAAAAACACCAGCTTCTCTACAAACAGCGAGCGGTGCCCGGATTTTTGCAAGTTCGGTTTTTTTTCAGGTTCTATTCTATATATTCTTCACGTTCAATGTTATTTCTGCATTCCTCTATTCCATTGTCCATAAACATATTCGCATATACCAAATGAAGTACCGAGGCAGGTTTGGTATCATTTTCTTTGGGATTTTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>264 186 128 73 70 70 63 27 26 22 19 18 18 11 5</canonical_bands>
                <polymorphic_bands>264 186 128 73 70 70 63 44 27 22 19 18 11 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAGAACATGTGAGCAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTACTCGACTACTTTGTTATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>296</pcr_amplicon_size>
		<canonical_amplicon>GAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAKGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30463</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>461951</contig_pos>
        <strand>+</strand>
        <context>TCCATAKGCT[C/T]CGCCCCCCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCT</left_flank>
        <right_flank>CGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGT</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACAACGAAAACATCAAACTGGCTTGAAAAAAGCATGCAAAGTGATGCAAATATGGTCTTTCAACGTTGAAAAGTCTAAATATTTTTGTTTGAAGGGAAAAAAATCCTGAAAATATATACGAAATATAGAAATTTCCGTTTCCGCTTTAGTTTTCCGTTTTCCGCCCAATTTTTAAAGTTTTTTTTTTCCGTTTCCGTTTCCGCGGAAAAAATTTCCTTTCCGTTTCCGTTTTCCGTGTTTCGGAAAAATGCGTTTCCTCCAATCACTGCTATGTATTAGTTAAGGCTTGTGGGTATTGNGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTTTCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCCGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTTAGTCAAAGTAGATCGTAGACCGTAGTTTTTGTTTGATGTTTTGTGAAAATTTTAACATTTTCCAAAAAACAAAATCCAAAAAACACCAGCTTCTCTACAAACAGCGAGCGGTGCCCGGATTTTTGCAAGTTCGGTTTTTTTTCAGGTTCTATTCTATATATTCTTCACGTTCAATGTTATTTCTGCATTCCTCTATTCCATTGTCCATAAACATATTCGCATATACCAAATGAAGTACCGAGGCAGGTTTGGTATCATTTTCTTTGGGATTTTGGTAAA</canonical>
            <polymorphic>AAACAACGAAAACATCAAACTGGCTTGAAAAAAGCATGCAAAGTGATGCAAATATGGTCTTTCAACGTTGAAAAGTCTAAATATTTTTGTTTGAAGGGAAAAAAATCCTGAAAATATATACGAAATATAGAAATTTCCGTTTCCGCTTTAGTTTTCCGTTTTCCGCCCAATTTTTAAAGTTTTTTTTTTCCGTTTCCGTTTCCGCGGAAAAAATTTCCTTTCCGTTTCCGTTTTCCGTGTTTCGGAAAAATGCGTTTCCTCCAATCACTGCTATGTATTAGTTAAGGCTTGTGGGTATTGNGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTTTCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCCGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTYCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTTAGTCAAAGTAGATCGTAGACCGTAGTTTTTGTTTGATGTTTTGTGAAAATTTTAACATTTTCCAAAAAACAAAATCCAAAAAACACCAGCTTCTCTACAAACAGCGAGCGGTGCCCGGATTTTTGCAAGTTCGGTTTTTTTTCAGGTTCTATTCTATATATTCTTCACGTTCAATGTTATTTCTGCATTCCTCTATTCCATTGTCCATAAACATATTCGCATATACCAAATGAAGTACCGAGGCAGGTTTGGTATCATTTTCTTTGGGATTTTGGTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGAACATGTGAGCAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTACTCGACTACTTTGTTATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>296</pcr_amplicon_size>
		<canonical_amplicon>GAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTYCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30464</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>461962</contig_pos>
        <strand>+</strand>
        <context>CGCCCCCCTG[A/C]CGAGCMTCAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTG</left_flank>
        <right_flank>CGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATCAAACTGGCTTGAAAAAAGCATGCAAAGTGATGCAAATATGGTCTTTCAACGTTGAAAAGTCTAAATATTTTTGTTTGAAGGGAAAAAAATCCTGAAAATATATACGAAATATAGAAATTTCCGTTTCCGCTTTAGTTTTCCGTTTTCCGCCCAATTTTTAAAGTTTTTTTTTTCCGTTTCCGTTTCCGCGGAAAAAATTTCCTTTCCGTTTCCGTTTTCCGTGTTTCGGAAAAATGCGTTTCCTCCAATCACTGCTATGTATTAGTTAAGGCTTGTGGGTATTGNGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTTTCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCCGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTTAGTCAAAGTAGATCGTAGACCGTAGTTTTTGTTTGATGTTTTGTGAAAATTTTAACATTTTCCAAAAAACAAAATCCAAAAAACACCAGCTTCTCTACAAACAGCGAGCGGTGCCCGGATTTTTGCAAGTTCGGTTTTTTTTCAGGTTCTATTCTATATATTCTTCACGTTCAATGTTATTTCTGCATTCCTCTATTCCATTGTCCATAAACATATTCGCATATACCAAATGAAGTACCGAGGCAGGTTTGGTATCATTTTCTTTGGGATTTTGGTAAATGGGTTGGCAC</canonical>
            <polymorphic>ACATCAAACTGGCTTGAAAAAAGCATGCAAAGTGATGCAAATATGGTCTTTCAACGTTGAAAAGTCTAAATATTTTTGTTTGAAGGGAAAAAAATCCTGAAAATATATACGAAATATAGAAATTTCCGTTTCCGCTTTAGTTTTCCGTTTTCCGCCCAATTTTTAAAGTTTTTTTTTTCCGTTTCCGTTTCCGCGGAAAAAATTTCCTTTCCGTTTCCGTTTTCCGTGTTTCGGAAAAATGCGTTTCCTCCAATCACTGCTATGTATTAGTTAAGGCTTGTGGGTATTGNGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTTTCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCCGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGMCGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTTAGTCAAAGTAGATCGTAGACCGTAGTTTTTGTTTGATGTTTTGTGAAAATTTTAACATTTTCCAAAAAACAAAATCCAAAAAACACCAGCTTCTCTACAAACAGCGAGCGGTGCCCGGATTTTTGCAAGTTCGGTTTTTTTTCAGGTTCTATTCTATATATTCTTCACGTTCAATGTTATTTCTGCATTCCTCTATTCCATTGTCCATAAACATATTCGCATATACCAAATGAAGTACCGAGGCAGGTTTGGTATCATTTTCTTTGGGATTTTGGTAAATGGGTTGGCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGAACATGTGAGCAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTACTCGACTACTTTGTTATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>296</pcr_amplicon_size>
		<canonical_amplicon>GAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGMCGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30465</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>461968</contig_pos>
        <strand>+</strand>
        <context>CCTGMCGAGC[A/C]TCACAAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGC</left_flank>
        <right_flank>TCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATA</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTGGCTTGAAAAAAGCATGCAAAGTGATGCAAATATGGTCTTTCAACGTTGAAAAGTCTAAATATTTTTGTTTGAAGGGAAAAAAATCCTGAAAATATATACGAAATATAGAAATTTCCGTTTCCGCTTTAGTTTTCCGTTTTCCGCCCAATTTTTAAAGTTTTTTTTTTCCGTTTCCGTTTCCGCGGAAAAAATTTCCTTTCCGTTTCCGTTTTCCGTGTTTCGGAAAAATGCGTTTCCTCCAATCACTGCTATGTATTAGTTAAGGCTTGTGGGTATTGNGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTTTCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCCGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTTAGTCAAAGTAGATCGTAGACCGTAGTTTTTGTTTGATGTTTTGTGAAAATTTTAACATTTTCCAAAAAACAAAATCCAAAAAACACCAGCTTCTCTACAAACAGCGAGCGGTGCCCGGATTTTTGCAAGTTCGGTTTTTTTTCAGGTTCTATTCTATATATTCTTCACGTTCAATGTTATTTCTGCATTCCTCTATTCCATTGTCCATAAACATATTCGCATATACCAAATGAAGTACCGAGGCAGGTTTGGTATCATTTTCTTTGGGATTTTGGTAAATGGGTTGGCACTTGTAC</canonical>
            <polymorphic>AACTGGCTTGAAAAAAGCATGCAAAGTGATGCAAATATGGTCTTTCAACGTTGAAAAGTCTAAATATTTTTGTTTGAAGGGAAAAAAATCCTGAAAATATATACGAAATATAGAAATTTCCGTTTCCGCTTTAGTTTTCCGTTTTCCGCCCAATTTTTAAAGTTTTTTTTTTCCGTTTCCGTTTCCGCGGAAAAAATTTCCTTTCCGTTTCCGTTTTCCGTGTTTCGGAAAAATGCGTTTCCTCCAATCACTGCTATGTATTAGTTAAGGCTTGTGGGTATTGNGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTCGGTCGTTCGGCTGCGGCGAGCGGTTTCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCCGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCMTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAAGTCTTAGTCAAAGTAGATCGTAGACCGTAGTTTTTGTTTGATGTTTTGTGAAAATTTTAACATTTTCCAAAAAACAAAATCCAAAAAACACCAGCTTCTCTACAAACAGCGAGCGGTGCCCGGATTTTTGCAAGTTCGGTTTTTTTTCAGGTTCTATTCTATATATTCTTCACGTTCAATGTTATTTCTGCATTCCTCTATTCCATTGTCCATAAACATATTCGCATATACCAAATGAAGTACCGAGGCAGGTTTGGTATCATTTTCTTTGGGATTTTGGTAAATGGGTTGGCACTTGTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>264 207 128 73 70 70 63 26 22 19 18 18 11 6 5</canonical_bands>
                <polymorphic_bands>264 207 128 88 73 70 63 26 22 19 18 11 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAGAACATGTGAGCAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTACTCGACTACTTTGTTATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>296</pcr_amplicon_size>
		<canonical_amplicon>GAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCCTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCATGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTTCGCCCCCCTGACGAGCMTCACAAAAATCGACGCNNNNNNNNNNGCCAAGTCTTGTGTCGTTACAATAACAGAATACAAGACTTGGCCAAGCCTCCCACAAGTTTAGGAGAAGCTTACCACAATTCTTAACTAATACATAGAACAATGTGATCAAATACTTGTGCAAGTATTGGCGTCGACAGCCGAGAAAAAAAATAACAAAGTAGTCGAGTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30466</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>491027</contig_pos>
        <strand>+</strand>
        <context>AGAGCCCCCC[C/T]CCCCTGTAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCATTTTGAGCGCTTTTTTTAAAAAATGGTCGGAAAAATAGAGCCCCCC</left_flank>
        <right_flank>CCCCTGTAATTAAAGGGACCCTCTAATAGAAGGGCCCTCCGGAGGTACCT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGACAGGGCGATTAATTTTTTGCATAGAGGATAAAAGGCAAATTGAAGCCGGCATCCCAGGAAATGATAGAAAATGCACGCAAGATCATTAAACTTTGGTATGTTATGTTCATTTATGCTTGACAGGTATCATTCTCCACTCCCTATTTCTTTTTAATGGTCACTCTAGTTCTAGTTCATTCTATTATTTTACTTGCAATCGTAAATAAATAAATAAATAAATAAATGTTTTTCAGAGCAAAGTTTAGCAATTATGGAATATTGAACTTTCAAGCTAGCTTTCATAACTGCCGAAAAACCTGTATTAGAAGAGCTCCTTTAATGAAAAAAAAATCATCCGTTTTCAGTGATAAATGTCCCAGAAACTCCGAATTTTTATAGAACTCATTTGAAACAGCGTTTTCGCTCAAAAACTTGCCTCATGTTGGTGAAGTTGATGAATTTTCATGCATTTTGAGCGCTTTTTTTAAAAAATGGTCGGAAAAATAGAGCCCCCCTCCCCTGTAATTAAAGGGACCCTCTAATAGAAGGGCCCTCCGGAGGTACCTTGGATCAATAGAAGGGCCAGACCTTCTATTACAGGTTCTACGGTATCCATTTTCGCAGACCAGGAATTGTATTTTTTAGAACAAAAACATTTTCCTGGGATTACTGTAGACAAAAATATGCAATATCGCGTTCGGTGTACTGCACGGAAATGTTTTTTAGCTCTCTATTTTTTTCAACTTGCAGACTAAAAGTTGTTTTTTTTTTCTGCATTCTTTCTTAGAAAACCTTCTCGCTCGCTTGCTTCCAAACGTTCAGAGTTCAAGTGAATTAGGTTTCCCAGAAAGTCAATTAGTTCTCAGAGGGTCATTAACAAGAGGCTTAACGGCTTTGTACCTTGTTTTAAATTTTTATGTGTGTAAGAGCTCTCTCTTTTCATGAGGCAAGCATGATTGAGGTTAAAAATAGCTTACCTTGGAGGTCTACTCGTATGTGGAATGGCGTTGGTGAAT</canonical>
            <polymorphic>GATGACAGGGCGATTAATTTTTTGCATAGAGGATAAAAGGCAAATTGAAGCCGGCATCCCAGGAAATGATAGAAAATGCACGCAAGATCATTAAACTTTGGTATGTTATGTTCATTTATGCTTGACAGGTATCATTCTCCACTCCCTATTTCTTTTTAATGGTCACTCTAGTTCTAGTTCATTCTATTATTTTACTTGCAATCGTAAATAAATAAATAAATAAATAAATGTTTTTCAGAGCAAAGTTTAGCAATTATGGAATATTGAACTTTCAAGCTAGCTTTCATAACTGCCGAAAAACCTGTATTAGAAGAGCTCCTTTAATGAAAAAAAAATCATCCGTTTTCAGTGATAAATGTCCCAGAAACTCCGAATTTTTATAGAACTCATTTGAAACAGCGTTTTCGCTCAAAAACTTGCCTCATGTTGGTGAAGTTGATGAATTTTCATGCATTTTGAGCGCTTTTTTTAAAAAATGGTCGGAAAAATAGAGCCCCCCYCCCCTGTAATTAAAGGGACCCTCTAATAGAAGGGCCCTCCGGAGGTACCTTGGATCAATAGAAGGGCCAGACCTTCTATTACAGGTTCTACGGTATCCATTTTCGCAGACCAGGAATTGTATTTTTTAGAACAAAAACATTTTCCTGGGATTACTGTAGACAAAAATATGCAATATCGCGTTCGGTGTACTGCACGGAAATGTTTTTTAGCTCTCTATTTTTTTCAACTTGCAGACTAAAAGTTGTTTTTTTTTTCTGCATTCTTTCTTAGAAAACCTTCTCGCTCGCTTGCTTCCAAACGTTCAGAGTTCAAGTGAATTAGGTTTCCCAGAAAGTCAATTAGTTCTCAGAGGGTCATTAACAAGAGGCTTAACGGCTTTGTACCTTGTTTTAAATTTTTATGTGTGTAAGAGCTCTCTCTTTTCATGAGGCAAGCATGATTGAGGTTAAAAATAGCTTACCTTGGAGGTCTACTCGTATGTGGAATGGCGTTGGTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGATAAATGTCCCAGAAACTC</pcr_primer_p1>
		<pcr_primer_p2>TGGATACCGTAGAACCTGTAATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTGATAAATGTCCCAGAAACTCCGAATTTTTATAGAACTCATTTGAAACAGCGTTTTCGCTCAAAAACTTGCCTCATGTTGGTGAAGTTGATGAATTTTCATGCATTTTGAGCGCTTTTTTTAAAAAATGGTCGGAAAAATAGAGCCCCCCTCCCCTGTAATTAAAGGGACCCTCTAATAGAAGGGCCCTCCGGAGGTACCTTGGATCAATAGAAGGGCCAGACCTTCTATTACAGGTTCTACGGTATCCA</canonical_amplicon>
		<polymorphic_amplicon>GTGATAAATGTCCCAGAAACTCCGAATTTTTATAGAACTCATTTGAAACAGCGTTTTCGCTCAAAAACTTGCCTCATGTTGGTGAAGTTGATGAATTTTCATGCATTTTGAGCGCTTTTTTTAAAAAATGGTCGGAAAAATAGAGCCCCCCYCCCCTGTAATTAAAGGGACCCTCTAATAGAAGGGCCCTCCGGAGGTACCTTGGATCAATAGAAGGGCCAGACCTTCTATTACAGGTTCTACGGTATCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30467</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>491177</contig_pos>
        <strand>+</strand>
        <context>TTTTCCTGGG[A/G]TTACTGTAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCGCAGACCAGGAATTGTATTTTTTAGAACAAAAACATTTTCCTGGG</left_flank>
        <right_flank>TTACTGTAGACAAAAATATGCAATATCGCGTTCGGTGTACTGCACGGAAA</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTTTTAATGGTCACTCTAGTTCTAGTTCATTCTATTATTTTACTTGCAATCGTAAATAAATAAATAAATAAATAAATGTTTTTCAGAGCAAAGTTTAGCAATTATGGAATATTGAACTTTCAAGCTAGCTTTCATAACTGCCGAAAAACCTGTATTAGAAGAGCTCCTTTAATGAAAAAAAAATCATCCGTTTTCAGTGATAAATGTCCCAGAAACTCCGAATTTTTATAGAACTCATTTGAAACAGCGTTTTCGCTCAAAAACTTGCCTCATGTTGGTGAAGTTGATGAATTTTCATGCATTTTGAGCGCTTTTTTTAAAAAATGGTCGGAAAAATAGAGCCCCCCTCCCCTGTAATTAAAGGGACCCTCTAATAGAAGGGCCCTCCGGAGGTACCTTGGATCAATAGAAGGGCCAGACCTTCTATTACAGGTTCTACGGTATCCATTTTCGCAGACCAGGAATTGTATTTTTTAGAACAAAAACATTTTCCTGGGATTACTGTAGACAAAAATATGCAATATCGCGTTCGGTGTACTGCACGGAAATGTTTTTTAGCTCTCTATTTTTTTCAACTTGCAGACTAAAAGTTGTTTTTTTTTTCTGCATTCTTTCTTAGAAAACCTTCTCGCTCGCTTGCTTCCAAACGTTCAGAGTTCAAGTGAATTAGGTTTCCCAGAAAGTCAATTAGTTCTCAGAGGGTCATTAACAAGAGGCTTAACGGCTTTGTACCTTGTTTTAAATTTTTATGTGTGTAAGAGCTCTCTCTTTTCATGAGGCAAGCATGATTGAGGTTAAAAATAGCTTACCTTGGAGGTCTACTCGTATGTGGAATGGCGTTGGTGAATCTATCAGCGAAAACTTTAAAGAACTGCCTTCGAATCTCGTTGCGTCCAACGCCGGGAGCTCCCAAAAGCACCACTACTCGTCGTCGCTTCTTTTTGTTCCGCCATCGAAACACGCCTTCGTAGTAGCGATCTTTATGACTCTGGAAATAC</canonical>
            <polymorphic>TCTTTTTAATGGTCACTCTAGTTCTAGTTCATTCTATTATTTTACTTGCAATCGTAAATAAATAAATAAATAAATAAATGTTTTTCAGAGCAAAGTTTAGCAATTATGGAATATTGAACTTTCAAGCTAGCTTTCATAACTGCCGAAAAACCTGTATTAGAAGAGCTCCTTTAATGAAAAAAAAATCATCCGTTTTCAGTGATAAATGTCCCAGAAACTCCGAATTTTTATAGAACTCATTTGAAACAGCGTTTTCGCTCAAAAACTTGCCTCATGTTGGTGAAGTTGATGAATTTTCATGCATTTTGAGCGCTTTTTTTAAAAAATGGTCGGAAAAATAGAGCCCCCCTCCCCTGTAATTAAAGGGACCCTCTAATAGAAGGGCCCTCCGGAGGTACCTTGGATCAATAGAAGGGCCAGACCTTCTATTACAGGTTCTACGGTATCCATTTTCGCAGACCAGGAATTGTATTTTTTAGAACAAAAACATTTTCCTGGGRTTACTGTAGACAAAAATATGCAATATCGCGTTCGGTGTACTGCACGGAAATGTTTTTTAGCTCTCTATTTTTTTCAACTTGCAGACTAAAAGTTGTTTTTTTTTTCTGCATTCTTTCTTAGAAAACCTTCTCGCTCGCTTGCTTCCAAACGTTCAGAGTTCAAGTGAATTAGGTTTCCCAGAAAGTCAATTAGTTCTCAGAGGGTCATTAACAAGAGGCTTAACGGCTTTGTACCTTGTTTTAAATTTTTATGTGTGTAAGAGCTCTCTCTTTTCATGAGGCAAGCATGATTGAGGTTAAAAATAGCTTACCTTGGAGGTCTACTCGTATGTGGAATGGCGTTGGTGAATCTATCAGCGAAAACTTTAAAGAACTGCCTTCGAATCTCGTTGCGTCCAACGCCGGGAGCTCCCAAAAGCACCACTACTCGTCGTCGCTTCTTTTTGTTCCGCCATCGAAACACGCCTTCGTAGTAGCGATCTTTATGACTCTGGAAATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATTACAGGTTCTACGGTATCC</pcr_primer_p1>
		<pcr_primer_p2>ACCTAATTCACTTGAACTCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTATTACAGGTTCTACGGTATCCATTTTCGCAGACCAGGAATTGTATTTTTTAGAACAAAAACATTTTCCTGGGATTACTGTAGACAAAAATATGCAATATCGCGTTCGGTGTACTGCACGGAAATGTTTTTTAGCTCTCTATTTTTTTCAACTTGCAGACTAAAAGTTGTTTTTTTTTTCTGCATTCTTTCTTAGAAAACCTTCTCGCTCGCTTGCTTCCAAACGTTCAGAGTTCAAGTGAATTAGGT</canonical_amplicon>
		<polymorphic_amplicon>TCTATTACAGGTTCTACGGTATCCATTTTCGCAGACCAGGAATTGTATTTTTTAGAACAAAAACATTTTCCTGGGRTTACTGTAGACAAAAATATGCAATATCGCGTTCGGTGTACTGCACGGAAATGTTTTTTAGCTCTCTATTTTTTTCAACTTGCAGACTAAAAGTTGTTTTTTTTTTCTGCATTCTTTCTTAGAAAACCTTCTCGCTCGCTTGCTTCCAAACGTTCAGAGTTCAAGTGAATTAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30468</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>498088</contig_pos>
        <strand>+</strand>
        <context>ACTCTTTACG[A/G]GGAGGACATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCGCGCTACTCTATAAGATACTGTCCTCGCAAGTTCAGACTCTTTACG</left_flank>
        <right_flank>GGAGGACATGGAGAAGATCTATCAGCTCAACGTGGATATCTCGCCGCTGG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAACAGTCAGACGAGCCGCCACACCAGGACCCAGCAATCAGCAAGCACCTGAGGAGGGAGATGCAGAAGTCGTCGAAGGCGGCGAAGAGGAGATGTCGGAGGGCGAGGATGAGCTTACTTTCTAATGGATCTCGATTTCTGTATTTTTAATAACTCTTGTACTTTTAAGCTACTAATAAATGTATATAATAATTTTATAGGTCTTGATATGCCACGCATTGGCAACAAATCTGAAAAATGTGATGAAATGTTGAAATTTTAGTTCCCAAGATTTTGCATAAACAAAACAAGATGGCTTCGATGATGGAGGTAACTGCGCTCCAATGAGAAGGTTCACGTGGCTTCTTCGCCACGTCACTTTCTCAATAAAGCGCAACTGCATAGCACATCAGTTCGAAGTTCCCTATGATTCCAGAAAATCCCAAAGATCAACCACGACGATGAGATTTTCGCGCTACTCTATAAGATACTGTCCTCGCAAGTTCAGACTCTTTACGAGGAGGACATGGAGAAGATCTATCAGCTCAACGTGGATATCTCGCCGCTGGAAATCTCGAAATTGACTGAAAAAATGAAAAAAGTGTTTCTCGAGCAACCGTGTCTTCTGGTAATTGGCGCTGAGCCAATCACCGTAGTCGCCGATATGCACGGACAATCCATTCATCTCCTGCGGATTCTGATGACTTGTGACGCTCCGCCCACCCAGAAATTTCTGTTTTTAGGGGATTATGTGGATCGTGGATCACAAAGTGTTGCTGTGATTTGTCTTCTGTTTTGTCTGAAACATCGCTATCCGAATCATGTCTACTTGCTACGTGGCAATCATGAAGATGTGAATACGACACTGAATTATGGGTAAGTTTGGACGCGTCGCGTTTCGGCGTAGCGGTCGCCGGCTGGATTTTCTAAAACTGGGACGCAGACAAATTTCACGACAAGAAAGTGCGTTCTATTTAAACAAATAAGAAAATTCAGGTTCTATGACGAGTGTCTCGATC</canonical>
            <polymorphic>CTCAACAGTCAGACGAGCCGCCACACCAGGACCCAGCAATCAGCAAGCACCTGAGGAGGGAGATGCAGAAGTCGTCGAAGGCGGCGAAGAGGAGATGTCGGAGGGCGAGGATGAGCTTACTTTCTAATGGATCTCGATTTCTGTATTTTTAATAACTCTTGTACTTTTAAGCTACTAATAAATGTATATAATAATTTTATAGGTCTTGATATGCCACGCATTGGCAACAAATCTGAAAAATGTGATGAAATGTTGAAATTTTAGTTCCCAAGATTTTGCATAAACAAAACAAGATGGCTTCGATGATGGAGGTAACTGCGCTCCAATGAGAAGGTTCACGTGGCTTCTTCGCCACGTCACTTTCTCAATAAAGCGCAACTGCATAGCACATCAGTTCGAAGTTCCCTATGATTCCAGAAAATCCCAAAGATCAACCACGACGATGAGATTTTCGCGCTACTCTATAAGATACTGTCCTCGCAAGTTCAGACTCTTTACGRGGAGGACATGGAGAAGATCTATCAGCTCAACGTGGATATCTCGCCGCTGGAAATCTCGAAATTGACTGAAAAAATGAAAAAAGTGTTTCTCGAGCAACCGTGTCTTCTGGTAATTGGCGCTGAGCCAATCACCGTAGTCGCCGATATGCACGGACAATCCATTCATCTCCTGCGGATTCTGATGACTTGTGACGCTCCGCCCACCCAGAAATTTCTGTTTTTAGGGGATTATGTGGATCGTGGATCACAAAGTGTTGCTGTGATTTGTCTTCTGTTTTGTCTGAAACATCGCTATCCGAATCATGTCTACTTGCTACGTGGCAATCATGAAGATGTGAATACGACACTGAATTATGGGTAAGTTTGGACGCGTCGCGTTTCGGCGTAGCGGTCGCCGGCTGGATTTTCTAAAACTGGGACGCAGACAAATTTCACGACAAGAAAGTGCGTTCTATTTAAACAAATAAGAAAATTCAGGTTCTATGACGAGTGTCTCGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCGCGCTACTCTATAAGAT</pcr_primer_p1>
		<pcr_primer_p2>GCGTCACAAGTCATCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCGCGCTACTCTATAAGATACTGTCCTCGCAAGTTCAGACTCTTTACGAGGAGGACATGGAGAAGATCTATCAGCTCAACGTGGATATCTCGCCGCTGGAAATCTCGAAATTGACTGAAAAAATGAAAAAAGTGTTTCTCGAGCAACCGTGTCTTCTGGTAATTGGCGCTGAGCCAATCACCGTAGTCGCCGATATGCACGGACAATCCATTCATCTCCTGCGGATTCTGATGACTTGTGACGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCGCGCTACTCTATAAGATACTGTCCTCGCAAGTTCAGACTCTTTACGRGGAGGACATGGAGAAGATCTATCAGCTCAACGTGGATATCTCGCCGCTGGAAATCTCGAAATTGACTGAAAAAATGAAAAAAGTGTTTCTCGAGCAACCGTGTCTTCTGGTAATTGGCGCTGAGCCAATCACCGTAGTCGCCGATATGCACGGACAATCCATTCATCTCCTGCGGATTCTGATGACTTGTGACGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30469</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>498344</contig_pos>
        <strand>+</strand>
        <context>CACAAAGTGT[C/T]GCTGTGATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGAAATTTCTGTTTTTAGGGGATTATGTGGATCGTGGATCACAAAGTGT</left_flank>
        <right_flank>GCTGTGATTTGTCTTCTGTTTTGTCTGAAACATCGCTATCCGAATCATGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTAGTTCCCAAGATTTTGCATAAACAAAACAAGATGGCTTCGATGATGGAGGTAACTGCGCTCCAATGAGAAGGTTCACGTGGCTTCTTCGCCACGTCACTTTCTCAATAAAGCGCAACTGCATAGCACATCAGTTCGAAGTTCCCTATGATTCCAGAAAATCCCAAAGATCAACCACGACGATGAGATTTTCGCGCTACTCTATAAGATACTGTCCTCGCAAGTTCAGACTCTTTACGAGGAGGACATGGAGAAGATCTATCAGCTCAACGTGGATATCTCGCCGCTGGAAATCTCGAAATTGACTGAAAAAATGAAAAAAGTGTTTCTCGAGCAACCGTGTCTTCTGGTAATTGGCGCTGAGCCAATCACCGTAGTCGCCGATATGCACGGACAATCCATTCATCTCCTGCGGATTCTGATGACTTGTGACGCTCCGCCCACCCAGAAATTTCTGTTTTTAGGGGATTATGTGGATCGTGGATCACAAAGTGTTGCTGTGATTTGTCTTCTGTTTTGTCTGAAACATCGCTATCCGAATCATGTCTACTTGCTACGTGGCAATCATGAAGATGTGAATACGACACTGAATTATGGGTAAGTTTGGACGCGTCGCGTTTCGGCGTAGCGGTCGCCGGCTGGATTTTCTAAAACTGGGACGCAGACAAATTTCACGACAAGAAAGTGCGTTCTATTTAAACAAATAAGAAAATTCAGGTTCTATGACGAGTGTCTCGATCAATGGAAGAGCGAGGAGATAGGAGAAACTGTGTGGAAAATGTTCATCGAAACGTTCAACTGTATGCCGCTGGCCGCTGTGATTGGCTCAAAAGTCTTCTGCTCACACGGAGGACTCTCCCCAAACATGGAATCAATCGAAGAGATCAATGTCATCGACCGCCCATCTGTAGTGCCACCATACGGTTTGGCGTGTGACCTACTTTGGTCGGACCCAGCACAACCGGAAAGGAATGGCTGGGGACTTAGTCATCGTGG</canonical>
            <polymorphic>AATTTTAGTTCCCAAGATTTTGCATAAACAAAACAAGATGGCTTCGATGATGGAGGTAACTGCGCTCCAATGAGAAGGTTCACGTGGCTTCTTCGCCACGTCACTTTCTCAATAAAGCGCAACTGCATAGCACATCAGTTCGAAGTTCCCTATGATTCCAGAAAATCCCAAAGATCAACCACGACGATGAGATTTTCGCGCTACTCTATAAGATACTGTCCTCGCAAGTTCAGACTCTTTACGAGGAGGACATGGAGAAGATCTATCAGCTCAACGTGGATATCTCGCCGCTGGAAATCTCGAAATTGACTGAAAAAATGAAAAAAGTGTTTCTCGAGCAACCGTGTCTTCTGGTAATTGGCGCTGAGCCAATCACCGTAGTCGCCGATATGCACGGACAATCCATTCATCTCCTGCGGATTCTGATGACTTGTGACGCTCCGCCCACCCAGAAATTTCTGTTTTTAGGGGATTATGTGGATCGTGGATCACAAAGTGTYGCTGTGATTTGTCTTCTGTTTTGTCTGAAACATCGCTATCCGAATCATGTCTACTTGCTACGTGGCAATCATGAAGATGTGAATACGACACTGAATTATGGGTAAGTTTGGACGCGTCGCGTTTCGGCGTAGCGGTCGCCGGCTGGATTTTCTAAAACTGGGACGCAGACAAATTTCACGACAAGAAAGTGCGTTCTATTTAAACAAATAAGAAAATTCAGGTTCTATGACGAGTGTCTCGATCAATGGAAGAGCGAGGAGATAGGAGAAACTGTGTGGAAAATGTTCATCGAAACGTTCAACTGTATGCCGCTGGCCGCTGTGATTGGCTCAAAAGTCTTCTGCTCACACGGAGGACTCTCCCCAAACATGGAATCAATCGAAGAGATCAATGTCATCGACCGCCCATCTGTAGTGCCACCATACGGTTTGGCGTGTGACCTACTTTGGTCGGACCCAGCACAACCGGAAAGGAATGGCTGGGGACTTAGTCATCGTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCGTGTCTTCTGGTAATTG</pcr_primer_p1>
		<pcr_primer_p2>GTCGTATTCACATCTTCATGATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACCGTGTCTTCTGGTAATTGGCGCTGAGCCAATCACCGTAGTCGCCGATATGCACGGACAATCCATTCATCTCCTGCGGATTCTGATGACTTGTGACGCTCCGCCCACCCAGAAATTTCTGTTTTTAGGGGATTATGTGGATCGTGGATCACAAAGTGTTGCTGTGATTTGTCTTCTGTTTTGTCTGAAACATCGCTATCCGAATCATGTCTACTTGCTACGTGGCAATCATGAAGATGTGAATACGAC</canonical_amplicon>
		<polymorphic_amplicon>ACCGTGTCTTCTGGTAATTGGCGCTGAGCCAATCACCGTAGTCGCCGATATGCACGGACAATCCATTCATCTCCTGCGGATTCTGATGACTTGTGACGCTCCGCCCACCCAGAAATTTCTGTTTTTAGGGGATTATGTGGATCGTGGATCACAAAGTGTYGCTGTGATTTGTCTTCTGTTTTGTCTGAAACATCGCTATCCGAATCATGTCTACTTGCTACGTGGCAATCATGAAGATGTGAATACGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30470</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>629364</contig_pos>
        <strand></strand>
        <context>GAAGAAGTCA[A/C]MACGGAAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTTGAAATGAGGGGGCGCCATATTAGACAAGAAGAAGAAGAAGAAGTCA</left_flank>
        <right_flank>AACGGAAAGAAGAGAAGATATGCGATTGCGCAGTACGTGATGGACATATG</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGACGGCGTTCGTTAAAATTAAAAATTGAAAATCGAATGCTTTTTGAGCAAGATTATGTATCAGTAGACGGTGTGGCCCGAATTCCCTAGTTTTCGAATTCAAAATATTTTTTAGCAATTATGGGTCATTCTAATTTAGCTGTTCAAATTAAATATGAAGTGGTTCACAATGGTGGGATCATGTTACCGTAAACAATTTATCACTTGGCAACTTTTTCATATCTTTTACGAAAACTGAGAAAAATTGTCCAGAAGATAAAGTTAAGGGCCCTTCTATTACAGGTTTTACGGTATCTTTTTTCCTGACCATTCAGAAATTCATGTTGGCAACTTTCTATATGGACTCTCGCATATCTTATAACCGCTTTGAAAACCACACGAAATGGTTTTTTTTTGTCGATTACGCAATTGATAGATTGTTGTTTAGAAAGATGTCGATGACATTGTTGTTTGAAATGAGGGGGCGCCATATTAGACAAGAAGAAGAAGAAGAAGTCAAAACGGAAAGAAGAGAAGATATGCGATTGCGCAGTACGTGATGGACATATGGAAGTGATTAGGTGAGATGAGATGGGACAAGGAGGCAACACAAACCGATTGGAAAAATTTCCAAAAGGTAAAATGAGAAGATGAAGGCATTTTGTGGGTGAGGGGTAGCGGCTAGCAAAGAATACGAACATTGACCGAAAGGATGAATTACGGGTTAGAAACAAGAATCAACCATGGGAACCGATTGGAACAAAAATAGGGAGGGAGGGGAGAGGATGAGACCATAGGGGTTTTGGTTCAAATTATTGCGAAGCAGAGGAAAGGCTGATTACCCCATTTCTTCAGATAAAAGAAGAGTCCAAAAGTTAGTTCATAATTATCTCAATTAGTTAAATATTGGTCAGTTTATAAAATGCATTAAAGTGTACGAGAAAGATTTGGGTCTTTGAAAATCAATATTACCGTATTTGTTCCAATAGAATCCCACCCACTTTGATATCAATTATCTCG</canonical>
            <polymorphic>TTGACGGCGTTCGTTAAAATTAAAAATTGAAAATCGAATGCTTTTTGAGCAAGATTATGTATCAGTAGACGGTGTGGCCCGAATTCCCTAGTTTTCGAATTCAAAATATTTTTTAGCAATTATGGGTCATTCTAATTTAGCTGTTCAAATTAAATATGAAGTGGTTCACAATGGTGGGATCATGTTACCGTAAACAATTTATCACTTGGCAACTTTTTCATATCTTTTACGAAAACTGAGAAAAATTGTCCAGAAGATAAAGTTAAGGGCCCTTCTATTACAGGTTTTACGGTATCTTTTTTCCTGACCATTCAGAAATTCATGTTGGCAACTTTCTATATGGACTCTCGCATATCTTATAACCGCTTTGAAAACCACACGAAATGGTTTTTTTTTGTCGATTACGCAATTGATAGATTGTTGTTTAGAAAGATGTCGATGACATTGTTGTTTGAAATGAGGGGGCGCCATATTAGACAAGAAGAAGAAGAAGAAGTCAMAACGGAAAGAAGAGAAGATATGCGATTGCGCAGTACGTGATGGACATATGGAAGTGATTAGGTGAGATGAGATGGGACAAGGAGGCAACACAAACCGATTGGAAAAATTTCCAAAAGGTAAAATGAGAAGATGAAGGCATTTTGTGGGTGAGGGGTAGCGGCTAGCAAAGAATACGAACATTGACCGAAAGGATGAATTACGGGTTAGAAACAAGAATCAACCATGGGAACCGATTGGAACAAAAATAGGGAGGGAGGGGAGAGGATGAGACCATAGGGGTTTTGGTTCAAATTATTGCGAAGCAGAGGAAAGGCTGATTACCCCATTTCTTCAGATAAAAGAAGAGTCCAAAAGTTAGTTCATAATTATCTCAATTAGTTAAATATTGGTCAGTTTATAAAATGCATTAAAGTGTACGAGAAAGATTTGGGTCTTTGAAAATCAATATTACCGTATTTGTTCCAATAGAATCCCACCCACTTTGATATCAATTATCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCAACTTTCTATATGGACTCTC</pcr_primer_p1>
		<pcr_primer_p2>CATCTCATCTCACCTAATCACTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGCAACTTTCTATATGGACTCTCGCATATCTTATAACCGCTTTGAAAACCACACGAAATGGTTTTTTTTTGTCGATTACGCAATTGATAGATTGTTGTTTAGAAAGATGTCGATGACATTGTTGTTTGAAATGAGGGGGCGCCATATTAGACAAGAAGAAGAAGAAGAAGTCAAAACGGAAAGAAGAGAAGATATGCGATTGCGCAGTACGTGATGGACATATGGAAGTGATTAGGTGAGATGAGATG</canonical_amplicon>
		<polymorphic_amplicon>GGCAACTTTCTATATGGACTCTCGCATATCTTATAACCGCTTTGAAAACCACACGAAATGGTTTTTTTTTGTCGATTACGCAATTGATAGATTGTTGTTTAGAAAGATGTCGATGACATTGTTGTTTGAAATGAGGGGGCGCCATATTAGACAAGAAGAAGAAGAAGAAGTCAMAACGGAAAGAAGAGAAGATATGCGATTGCGCAGTACGTGATGGACATATGGAAGTGATTAGGTGAGATGAGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30471</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>629365</contig_pos>
        <strand>+</strand>
        <context>AAGAAGTCAM[A/C]ACGGAAAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTGAAATGAGGGGGCGCCATATTAGACAAGAAGAAGAAGAAGAAGTCAA</left_flank>
        <right_flank>ACGGAAAGAAGAGAAGATATGCGATTGCGCAGTACGTGATGGACATATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACGGCGTTCGTTAAAATTAAAAATTGAAAATCGAATGCTTTTTGAGCAAGATTATGTATCAGTAGACGGTGTGGCCCGAATTCCCTAGTTTTCGAATTCAAAATATTTTTTAGCAATTATGGGTCATTCTAATTTAGCTGTTCAAATTAAATATGAAGTGGTTCACAATGGTGGGATCATGTTACCGTAAACAATTTATCACTTGGCAACTTTTTCATATCTTTTACGAAAACTGAGAAAAATTGTCCAGAAGATAAAGTTAAGGGCCCTTCTATTACAGGTTTTACGGTATCTTTTTTCCTGACCATTCAGAAATTCATGTTGGCAACTTTCTATATGGACTCTCGCATATCTTATAACCGCTTTGAAAACCACACGAAATGGTTTTTTTTTGTCGATTACGCAATTGATAGATTGTTGTTTAGAAAGATGTCGATGACATTGTTGTTTGAAATGAGGGGGCGCCATATTAGACAAGAAGAAGAAGAAGAAGTCAAAACGGAAAGAAGAGAAGATATGCGATTGCGCAGTACGTGATGGACATATGGAAGTGATTAGGTGAGATGAGATGGGACAAGGAGGCAACACAAACCGATTGGAAAAATTTCCAAAAGGTAAAATGAGAAGATGAAGGCATTTTGTGGGTGAGGGGTAGCGGCTAGCAAAGAATACGAACATTGACCGAAAGGATGAATTACGGGTTAGAAACAAGAATCAACCATGGGAACCGATTGGAACAAAAATAGGGAGGGAGGGGAGAGGATGAGACCATAGGGGTTTTGGTTCAAATTATTGCGAAGCAGAGGAAAGGCTGATTACCCCATTTCTTCAGATAAAAGAAGAGTCCAAAAGTTAGTTCATAATTATCTCAATTAGTTAAATATTGGTCAGTTTATAAAATGCATTAAAGTGTACGAGAAAGATTTGGGTCTTTGAAAATCAATATTACCGTATTTGTTCCAATAGAATCCCACCCACTTTGATATCAATTATCTCGG</canonical>
            <polymorphic>TGACGGCGTTCGTTAAAATTAAAAATTGAAAATCGAATGCTTTTTGAGCAAGATTATGTATCAGTAGACGGTGTGGCCCGAATTCCCTAGTTTTCGAATTCAAAATATTTTTTAGCAATTATGGGTCATTCTAATTTAGCTGTTCAAATTAAATATGAAGTGGTTCACAATGGTGGGATCATGTTACCGTAAACAATTTATCACTTGGCAACTTTTTCATATCTTTTACGAAAACTGAGAAAAATTGTCCAGAAGATAAAGTTAAGGGCCCTTCTATTACAGGTTTTACGGTATCTTTTTTCCTGACCATTCAGAAATTCATGTTGGCAACTTTCTATATGGACTCTCGCATATCTTATAACCGCTTTGAAAACCACACGAAATGGTTTTTTTTTGTCGATTACGCAATTGATAGATTGTTGTTTAGAAAGATGTCGATGACATTGTTGTTTGAAATGAGGGGGCGCCATATTAGACAAGAAGAAGAAGAAGAAGTCAAMACGGAAAGAAGAGAAGATATGCGATTGCGCAGTACGTGATGGACATATGGAAGTGATTAGGTGAGATGAGATGGGACAAGGAGGCAACACAAACCGATTGGAAAAATTTCCAAAAGGTAAAATGAGAAGATGAAGGCATTTTGTGGGTGAGGGGTAGCGGCTAGCAAAGAATACGAACATTGACCGAAAGGATGAATTACGGGTTAGAAACAAGAATCAACCATGGGAACCGATTGGAACAAAAATAGGGAGGGAGGGGAGAGGATGAGACCATAGGGGTTTTGGTTCAAATTATTGCGAAGCAGAGGAAAGGCTGATTACCCCATTTCTTCAGATAAAAGAAGAGTCCAAAAGTTAGTTCATAATTATCTCAATTAGTTAAATATTGGTCAGTTTATAAAATGCATTAAAGTGTACGAGAAAGATTTGGGTCTTTGAAAATCAATATTACCGTATTTGTTCCAATAGAATCCCACCCACTTTGATATCAATTATCTCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCAACTTTCTATATGGACTCTC</pcr_primer_p1>
		<pcr_primer_p2>CATCTCATCTCACCTAATCACTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGCAACTTTCTATATGGACTCTCGCATATCTTATAACCGCTTTGAAAACCACACGAAATGGTTTTTTTTTGTCGATTACGCAATTGATAGATTGTTGTTTAGAAAGATGTCGATGACATTGTTGTTTGAAATGAGGGGGCGCCATATTAGACAAGAAGAAGAAGAAGAAGTCAAAACGGAAAGAAGAGAAGATATGCGATTGCGCAGTACGTGATGGACATATGGAAGTGATTAGGTGAGATGAGATG</canonical_amplicon>
		<polymorphic_amplicon>GGCAACTTTCTATATGGACTCTCGCATATCTTATAACCGCTTTGAAAACCACACGAAATGGTTTTTTTTTGTCGATTACGCAATTGATAGATTGTTGTTTAGAAAGATGTCGATGACATTGTTGTTTGAAATGAGGGGGCGCCATATTAGACAAGAAGAAGAAGAAGAAGTCAAMACGGAAAGAAGAGAAGATATGCGATTGCGCAGTACGTGATGGACATATGGAAGTGATTAGGTGAGATGAGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30472</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>629520</contig_pos>
        <strand>+</strand>
        <context>GGGTGAGGGG[C/T]AGCGGCTAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTCCAAAAGGTAAAATGAGAAGATGAAGGCATTTTGTGGGTGAGGGG</left_flank>
        <right_flank>AGCGGCTAGCAAAGAATACGAACATTGACCGAAAGGATGAATTACGGGTT</right_flank>
        <qual_score>149</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAGTGGTTCACAATGGTGGGATCATGTTACCGTAAACAATTTATCACTTGGCAACTTTTTCATATCTTTTACGAAAACTGAGAAAAATTGTCCAGAAGATAAAGTTAAGGGCCCTTCTATTACAGGTTTTACGGTATCTTTTTTCCTGACCATTCAGAAATTCATGTTGGCAACTTTCTATATGGACTCTCGCATATCTTATAACCGCTTTGAAAACCACACGAAATGGTTTTTTTTTGTCGATTACGCAATTGATAGATTGTTGTTTAGAAAGATGTCGATGACATTGTTGTTTGAAATGAGGGGGCGCCATATTAGACAAGAAGAAGAAGAAGAAGTCAAAACGGAAAGAAGAGAAGATATGCGATTGCGCAGTACGTGATGGACATATGGAAGTGATTAGGTGAGATGAGATGGGACAAGGAGGCAACACAAACCGATTGGAAAAATTTCCAAAAGGTAAAATGAGAAGATGAAGGCATTTTGTGGGTGAGGGGTAGCGGCTAGCAAAGAATACGAACATTGACCGAAAGGATGAATTACGGGTTAGAAACAAGAATCAACCATGGGAACCGATTGGAACAAAAATAGGGAGGGAGGGGAGAGGATGAGACCATAGGGGTTTTGGTTCAAATTATTGCGAAGCAGAGGAAAGGCTGATTACCCCATTTCTTCAGATAAAAGAAGAGTCCAAAAGTTAGTTCATAATTATCTCAATTAGTTAAATATTGGTCAGTTTATAAAATGCATTAAAGTGTACGAGAAAGATTTGGGTCTTTGAAAATCAATATTACCGTATTTGTTCCAATAGAATCCCACCCACTTTGATATCAATTATCTCGGTTCCTGTGAGAGATATCAAAAATTGGTCAACTGATAAAATGTTTGTGACATTACAGTTTGGCTGTAAACAACTTTTGTATATCTTTTACGGGAACCGAGAAACATTGGCTCAAAGTTAAAGTGAGAGGAGCTCTAGAAAAATGGTAGCTTACCAC</canonical>
            <polymorphic>TGAAGTGGTTCACAATGGTGGGATCATGTTACCGTAAACAATTTATCACTTGGCAACTTTTTCATATCTTTTACGAAAACTGAGAAAAATTGTCCAGAAGATAAAGTTAAGGGCCCTTCTATTACAGGTTTTACGGTATCTTTTTTCCTGACCATTCAGAAATTCATGTTGGCAACTTTCTATATGGACTCTCGCATATCTTATAACCGCTTTGAAAACCACACGAAATGGTTTTTTTTTGTCGATTACGCAATTGATAGATTGTTGTTTAGAAAGATGTCGATGACATTGTTGTTTGAAATGAGGGGGCGCCATATTAGACAAGAAGAAGAAGAAGAAGTCAAAACGGAAAGAAGAGAAGATATGCGATTGCGCAGTACGTGATGGACATATGGAAGTGATTAGGTGAGATGAGATGGGACAAGGAGGCAACACAAACCGATTGGAAAAATTTCCAAAAGGTAAAATGAGAAGATGAAGGCATTTTGTGGGTGAGGGGYAGCGGCTAGCAAAGAATACGAACATTGACCGAAAGGATGAATTACGGGTTAGAAACAAGAATCAACCATGGGAACCGATTGGAACAAAAATAGGGAGGGAGGGGAGAGGATGAGACCATAGGGGTTTTGGTTCAAATTATTGCGAAGCAGAGGAAAGGCTGATTACCCCATTTCTTCAGATAAAAGAAGAGTCCAAAAGTTAGTTCATAATTATCTCAATTAGTTAAATATTGGTCAGTTTATAAAATGCATTAAAGTGTACGAGAAAGATTTGGGTCTTTGAAAATCAATATTACCGTATTTGTTCCAATAGAATCCCACCCACTTTGATATCAATTATCTCGGTTCCTGTGAGAGATATCAAAAATTGGTCAACTGATAAAATGTTTGTGACATTACAGTTTGGCTGTAAACAACTTTTGTATATCTTTTACGGGAACCGAGAAACATTGGCTCAAAGTTAAAGTGAGAGGAGCTCTAGAAAAATGGTAGCTTACCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTTCCAAAAGGTAAAATGA</pcr_primer_p1>
		<pcr_primer_p2>TTTGGACTCTTCTTTTATCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATTTCCAAAAGGTAAAATGAGAAGATGAAGGCATTTTGTGGGTGAGGGGTAGCGGCTAGCAAAGAATACGAACATTGACCGAAAGGATGAATTACGGGTTAGAAACAAGAATCAACCATGGGAACCGATTGGAACAAAAATAGGGAGGGAGGGGAGAGGATGAGACCATAGGGGTTTTGGTTCAAATTATTGCGAAGCAGAGGAAAGGCTGATTACCCCATTTCTTCAGATAAAAGAAGAGTCCAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAATTTCCAAAAGGTAAAATGAGAAGATGAAGGCATTTTGTGGGTGAGGGGYAGCGGCTAGCAAAGAATACGAACATTGACCGAAAGGATGAATTACGGGTTAGAAACAAGAATCAACCATGGGAACCGATTGGAACAAAAATAGGGAGGGAGGGGAGAGGATGAGACCATAGGGGTTTTGGTTCAAATTATTGCGAAGCAGAGGAAAGGCTGATTACCCCATTTCTTCAGATAAAAGAAGAGTCCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30473</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>629657</contig_pos>
        <strand>+</strand>
        <context>TTGGTTCAAA[A/T]TATTGYGAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATAGGGAGGGAGGGGAGAGGATGAGACCATAGGGGTTTTGGTTCAAA</left_flank>
        <right_flank>TATTGCGAAGCAGAGGAAAGGCTGATTACCCCATTTCTTCAGATAAAAGA</right_flank>
        <qual_score>146</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTTTTTTCCTGACCATTCAGAAATTCATGTTGGCAACTTTCTATATGGACTCTCGCATATCTTATAACCGCTTTGAAAACCACACGAAATGGTTTTTTTTTGTCGATTACGCAATTGATAGATTGTTGTTTAGAAAGATGTCGATGACATTGTTGTTTGAAATGAGGGGGCGCCATATTAGACAAGAAGAAGAAGAAGAAGTCAAAACGGAAAGAAGAGAAGATATGCGATTGCGCAGTACGTGATGGACATATGGAAGTGATTAGGTGAGATGAGATGGGACAAGGAGGCAACACAAACCGATTGGAAAAATTTCCAAAAGGTAAAATGAGAAGATGAAGGCATTTTGTGGGTGAGGGGTAGCGGCTAGCAAAGAATACGAACATTGACCGAAAGGATGAATTACGGGTTAGAAACAAGAATCAACCATGGGAACCGATTGGAACAAAAATAGGGAGGGAGGGGAGAGGATGAGACCATAGGGGTTTTGGTTCAAATTATTGCGAAGCAGAGGAAAGGCTGATTACCCCATTTCTTCAGATAAAAGAAGAGTCCAAAAGTTAGTTCATAATTATCTCAATTAGTTAAATATTGGTCAGTTTATAAAATGCATTAAAGTGTACGAGAAAGATTTGGGTCTTTGAAAATCAATATTACCGTATTTGTTCCAATAGAATCCCACCCACTTTGATATCAATTATCTCGGTTCCTGTGAGAGATATCAAAAATTGGTCAACTGATAAAATGTTTGTGACATTACAGTTTGGCTGTAAACAACTTTTGTATATCTTTTACGGGAACCGAGAAACATTGGCTCAAAGTTAAAGTGAGAGGAGCTCTAGAAAAATGGTAGCTTACCACCCCTAATTAGGAAGAAAAAACTCATTTGGTCCATACTTAAATATTAATAAGGATATCAAAACTGATTTCACCTATTTACAGACCCTAACCAATAATCAAATCAAAATTTCGGCATTACGAAAAAATTTATGCCTGGT</canonical>
            <polymorphic>ATCTTTTTTCCTGACCATTCAGAAATTCATGTTGGCAACTTTCTATATGGACTCTCGCATATCTTATAACCGCTTTGAAAACCACACGAAATGGTTTTTTTTTGTCGATTACGCAATTGATAGATTGTTGTTTAGAAAGATGTCGATGACATTGTTGTTTGAAATGAGGGGGCGCCATATTAGACAAGAAGAAGAAGAAGAAGTCAAAACGGAAAGAAGAGAAGATATGCGATTGCGCAGTACGTGATGGACATATGGAAGTGATTAGGTGAGATGAGATGGGACAAGGAGGCAACACAAACCGATTGGAAAAATTTCCAAAAGGTAAAATGAGAAGATGAAGGCATTTTGTGGGTGAGGGGTAGCGGCTAGCAAAGAATACGAACATTGACCGAAAGGATGAATTACGGGTTAGAAACAAGAATCAACCATGGGAACCGATTGGAACAAAAATAGGGAGGGAGGGGAGAGGATGAGACCATAGGGGTTTTGGTTCAAAWTATTGCGAAGCAGAGGAAAGGCTGATTACCCCATTTCTTCAGATAAAAGAAGAGTCCAAAAGTTAGTTCATAATTATCTCAATTAGTTAAATATTGGTCAGTTTATAAAATGCATTAAAGTGTACGAGAAAGATTTGGGTCTTTGAAAATCAATATTACCGTATTTGTTCCAATAGAATCCCACCCACTTTGATATCAATTATCTCGGTTCCTGTGAGAGATATCAAAAATTGGTCAACTGATAAAATGTTTGTGACATTACAGTTTGGCTGTAAACAACTTTTGTATATCTTTTACGGGAACCGAGAAACATTGGCTCAAAGTTAAAGTGAGAGGAGCTCTAGAAAAATGGTAGCTTACCACCCCTAATTAGGAAGAAAAAACTCATTTGGTCCATACTTAAATATTAATAAGGATATCAAAACTGATTTCACCTATTTACAGACCCTAACCAATAATCAAATCAAAATTTCGGCATTACGAAAAAATTTATGCCTGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>198 139 117 100 95 91 90 74 31 23 19 14 9</canonical_bands>
                <polymorphic_bands>198 169 139 117 100 91 90 31 23 19 14 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTTCCAAAAGGTAAAATGAG</pcr_primer_p1>
		<pcr_primer_p2>TTTGGACTCTTCTTTTATCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATTTCCAAAAGGTAAAATGAGAAGATGAAGGCATTTTGTGGGTGAGGGGTAGCGGCTAGCAAAGAATACGAACATTGACCGAAAGGATGAATTACGGGTTAGAAACAAGAATCAACCATGGGAACCGATTGGAACAAAAATAGGGAGGGAGGGGAGAGGATGAGACCATAGGGGTTTTGGTTCAAATTATTGCGAAGCAGAGGAAAGGCTGATTACCCCATTTCTTCAGATAAAAGAAGAGTCCAAA</canonical_amplicon>
		<polymorphic_amplicon>AAATTTCCAAAAGGTAAAATGAGAAGATGAAGGCATTTTGTGGGTGAGGGGTAGCGGCTAGCAAAGAATACGAACATTGACCGAAAGGATGAATTACGGGTTAGAAACAAGAATCAACCATGGGAACCGATTGGAACAAAAATAGGGAGGGAGGGGAGAGGATGAGACCATAGGGGTTTTGGTTCAAAWTATTGCGAAGCAGAGGAAAGGCTGATTACCCCATTTCTTCAGATAAAAGAAGAGTCCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30474</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>629663</contig_pos>
        <strand>+</strand>
        <context>CAAAWTATTG[C/T]GAAGCAGAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGAGGGAGGGGAGAGGATGAGACCATAGGGGTTTTGGTTCAAATTATTG</left_flank>
        <right_flank>GAAGCAGAGGAAAGGCTGATTACCCCATTTCTTCAGATAAAAGAAGAGTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCTGACCATTCAGAAATTCATGTTGGCAACTTTCTATATGGACTCTCGCATATCTTATAACCGCTTTGAAAACCACACGAAATGGTTTTTTTTTGTCGATTACGCAATTGATAGATTGTTGTTTAGAAAGATGTCGATGACATTGTTGTTTGAAATGAGGGGGCGCCATATTAGACAAGAAGAAGAAGAAGAAGTCAAAACGGAAAGAAGAGAAGATATGCGATTGCGCAGTACGTGATGGACATATGGAAGTGATTAGGTGAGATGAGATGGGACAAGGAGGCAACACAAACCGATTGGAAAAATTTCCAAAAGGTAAAATGAGAAGATGAAGGCATTTTGTGGGTGAGGGGTAGCGGCTAGCAAAGAATACGAACATTGACCGAAAGGATGAATTACGGGTTAGAAACAAGAATCAACCATGGGAACCGATTGGAACAAAAATAGGGAGGGAGGGGAGAGGATGAGACCATAGGGGTTTTGGTTCAAATTATTGCGAAGCAGAGGAAAGGCTGATTACCCCATTTCTTCAGATAAAAGAAGAGTCCAAAAGTTAGTTCATAATTATCTCAATTAGTTAAATATTGGTCAGTTTATAAAATGCATTAAAGTGTACGAGAAAGATTTGGGTCTTTGAAAATCAATATTACCGTATTTGTTCCAATAGAATCCCACCCACTTTGATATCAATTATCTCGGTTCCTGTGAGAGATATCAAAAATTGGTCAACTGATAAAATGTTTGTGACATTACAGTTTGGCTGTAAACAACTTTTGTATATCTTTTACGGGAACCGAGAAACATTGGCTCAAAGTTAAAGTGAGAGGAGCTCTAGAAAAATGGTAGCTTACCACCCCTAATTAGGAAGAAAAAACTCATTTGGTCCATACTTAAATATTAATAAGGATATCAAAACTGATTTCACCTATTTACAGACCCTAACCAATAATCAAATCAAAATTTCGGCATTACGAAAAAATTTATGCCTGGTAAAAAT</canonical>
            <polymorphic>TTTCCTGACCATTCAGAAATTCATGTTGGCAACTTTCTATATGGACTCTCGCATATCTTATAACCGCTTTGAAAACCACACGAAATGGTTTTTTTTTGTCGATTACGCAATTGATAGATTGTTGTTTAGAAAGATGTCGATGACATTGTTGTTTGAAATGAGGGGGCGCCATATTAGACAAGAAGAAGAAGAAGAAGTCAAAACGGAAAGAAGAGAAGATATGCGATTGCGCAGTACGTGATGGACATATGGAAGTGATTAGGTGAGATGAGATGGGACAAGGAGGCAACACAAACCGATTGGAAAAATTTCCAAAAGGTAAAATGAGAAGATGAAGGCATTTTGTGGGTGAGGGGTAGCGGCTAGCAAAGAATACGAACATTGACCGAAAGGATGAATTACGGGTTAGAAACAAGAATCAACCATGGGAACCGATTGGAACAAAAATAGGGAGGGAGGGGAGAGGATGAGACCATAGGGGTTTTGGTTCAAATTATTGYGAAGCAGAGGAAAGGCTGATTACCCCATTTCTTCAGATAAAAGAAGAGTCCAAAAGTTAGTTCATAATTATCTCAATTAGTTAAATATTGGTCAGTTTATAAAATGCATTAAAGTGTACGAGAAAGATTTGGGTCTTTGAAAATCAATATTACCGTATTTGTTCCAATAGAATCCCACCCACTTTGATATCAATTATCTCGGTTCCTGTGAGAGATATCAAAAATTGGTCAACTGATAAAATGTTTGTGACATTACAGTTTGGCTGTAAACAACTTTTGTATATCTTTTACGGGAACCGAGAAACATTGGCTCAAAGTTAAAGTGAGAGGAGCTCTAGAAAAATGGTAGCTTACCACCCCTAATTAGGAAGAAAAAACTCATTTGGTCCATACTTAAATATTAATAAGGATATCAAAACTGATTTCACCTATTTACAGACCCTAACCAATAATCAAATCAAAATTTCGGCATTACGAAAAAATTTATGCCTGGTAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTCCAAAAGGTAAAATGAG</pcr_primer_p1>
		<pcr_primer_p2>TTTGGACTCTTCTTTTATCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATTTCCAAAAGGTAAAATGAGAAGATGAAGGCATTTTGTGGGTGAGGGGTAGCGGCTAGCAAAGAATACGAACATTGACCGAAAGGATGAATTACGGGTTAGAAACAAGAATCAACCATGGGAACCGATTGGAACAAAAATAGGGAGGGAGGGGAGAGGATGAGACCATAGGGGTTTTGGTTCAAATTATTGCGAAGCAGAGGAAAGGCTGATTACCCCATTTCTTCAGATAAAAGAAGAGTCCAAA</canonical_amplicon>
		<polymorphic_amplicon>AAATTTCCAAAAGGTAAAATGAGAAGATGAAGGCATTTTGTGGGTGAGGGGTAGCGGCTAGCAAAGAATACGAACATTGACCGAAAGGATGAATTACGGGTTAGAAACAAGAATCAACCATGGGAACCGATTGGAACAAAAATAGGGAGGGAGGGGAGAGGATGAGACCATAGGGGTTTTGGTTCAAATTATTGYGAAGCAGAGGAAAGGCTGATTACCCCATTTCTTCAGATAAAAGAAGAGTCCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30475</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>629739</contig_pos>
        <strand>+</strand>
        <context>AATTATCTCA[A/C]TTARTTAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATTTCTTCAGATAAAAGAAGAGTCCAAAAGTTAGTTCATAATTATCTCA</left_flank>
        <right_flank>TTAGTTAAATATTGGTCAGTTTATAAAATGCATTAAAGTGTACGAGAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACACGAAATGGTTTTTTTTTGTCGATTACGCAATTGATAGATTGTTGTTTAGAAAGATGTCGATGACATTGTTGTTTGAAATGAGGGGGCGCCATATTAGACAAGAAGAAGAAGAAGAAGTCAAAACGGAAAGAAGAGAAGATATGCGATTGCGCAGTACGTGATGGACATATGGAAGTGATTAGGTGAGATGAGATGGGACAAGGAGGCAACACAAACCGATTGGAAAAATTTCCAAAAGGTAAAATGAGAAGATGAAGGCATTTTGTGGGTGAGGGGTAGCGGCTAGCAAAGAATACGAACATTGACCGAAAGGATGAATTACGGGTTAGAAACAAGAATCAACCATGGGAACCGATTGGAACAAAAATAGGGAGGGAGGGGAGAGGATGAGACCATAGGGGTTTTGGTTCAAATTATTGCGAAGCAGAGGAAAGGCTGATTACCCCATTTCTTCAGATAAAAGAAGAGTCCAAAAGTTAGTTCATAATTATCTCAATTAGTTAAATATTGGTCAGTTTATAAAATGCATTAAAGTGTACGAGAAAGATTTGGGTCTTTGAAAATCAATATTACCGTATTTGTTCCAATAGAATCCCACCCACTTTGATATCAATTATCTCGGTTCCTGTGAGAGATATCAAAAATTGGTCAACTGATAAAATGTTTGTGACATTACAGTTTGGCTGTAAACAACTTTTGTATATCTTTTACGGGAACCGAGAAACATTGGCTCAAAGTTAAAGTGAGAGGAGCTCTAGAAAAATGGTAGCTTACCACCCCTAATTAGGAAGAAAAAACTCATTTGGTCCATACTTAAATATTAATAAGGATATCAAAACTGATTTCACCTATTTACAGACCCTAACCAATAATCAAATCAAAATTTCGGCATTACGAAAAAATTTATGCCTGGTAAAAATGATAAACCTCATCAAAAACAAAAGTTAGGACAAGGAGGTTTATGTTTTTGTAACTATCGTAAAATACCAAAATCTA</canonical>
            <polymorphic>CACACGAAATGGTTTTTTTTTGTCGATTACGCAATTGATAGATTGTTGTTTAGAAAGATGTCGATGACATTGTTGTTTGAAATGAGGGGGCGCCATATTAGACAAGAAGAAGAAGAAGAAGTCAAAACGGAAAGAAGAGAAGATATGCGATTGCGCAGTACGTGATGGACATATGGAAGTGATTAGGTGAGATGAGATGGGACAAGGAGGCAACACAAACCGATTGGAAAAATTTCCAAAAGGTAAAATGAGAAGATGAAGGCATTTTGTGGGTGAGGGGTAGCGGCTAGCAAAGAATACGAACATTGACCGAAAGGATGAATTACGGGTTAGAAACAAGAATCAACCATGGGAACCGATTGGAACAAAAATAGGGAGGGAGGGGAGAGGATGAGACCATAGGGGTTTTGGTTCAAATTATTGCGAAGCAGAGGAAAGGCTGATTACCCCATTTCTTCAGATAAAAGAAGAGTCCAAAAGTTAGTTCATAATTATCTCAMTTAGTTAAATATTGGTCAGTTTATAAAATGCATTAAAGTGTACGAGAAAGATTTGGGTCTTTGAAAATCAATATTACCGTATTTGTTCCAATAGAATCCCACCCACTTTGATATCAATTATCTCGGTTCCTGTGAGAGATATCAAAAATTGGTCAACTGATAAAATGTTTGTGACATTACAGTTTGGCTGTAAACAACTTTTGTATATCTTTTACGGGAACCGAGAAACATTGGCTCAAAGTTAAAGTGAGAGGAGCTCTAGAAAAATGGTAGCTTACCACCCCTAATTAGGAAGAAAAAACTCATTTGGTCCATACTTAAATATTAATAAGGATATCAAAACTGATTTCACCTATTTACAGACCCTAACCAATAATCAAATCAAAATTTCGGCATTACGAAAAAATTTATGCCTGGTAAAAATGATAAACCTCATCAAAAACAAAAGTTAGGACAAGGAGGTTTATGTTTTTGTAACTATCGTAAAATACCAAAATCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>198 139 117 100 96 95 90 74 32 31 19 9</canonical_bands>
                <polymorphic_bands>198 139 126 100 96 95 90 74 32 31 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTACGGGTTAGAAACAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>GATTTTCAAAGACCCAAATCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTACGGGTTAGAAACAAGAATCAACCATGGGAACCGATTGGAACAAAAATAGGGAGGGAGGGGAGAGGATGAGACCATAGGGGTTTTGGTTCAAATTATTGCGAAGCAGAGGAAAGGCTGATTACCCCATTTCTTCAGATAAAAGAAGAGTCCAAAAGTTAGTTCATAATTATCTCAATTAGTTAAATATTGGTCAGTTTATAAAATGCATTAAAGTGTACGAGAAAGATTTGGGTCTTTGAAAATC</canonical_amplicon>
		<polymorphic_amplicon>AATTACGGGTTAGAAACAAGAATCAACCATGGGAACCGATTGGAACAAAAATAGGGAGGGAGGGGAGAGGATGAGACCATAGGGGTTTTGGTTCAAATTATTGCGAAGCAGAGGAAAGGCTGATTACCCCATTTCTTCAGATAAAAGAAGAGTCCAAAAGTTAGTTCATAATTATCTCAMTTAGTTAAATATTGGTCAGTTTATAAAATGCATTAAAGTGTACGAGAAAGATTTGGGTCTTTGAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30476</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>629743</contig_pos>
        <strand>+</strand>
        <context>ATCTCAMTTA[A/G]TTAAATATTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTCAGATAAAAGAAGAGTCCAAAAGTTAGTTCATAATTATCTCAATTA</left_flank>
        <right_flank>TTAAATATTGGTCAGTTTATAAAATGCATTAAAGTGTACGAGAAAGATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAAATGGTTTTTTTTTGTCGATTACGCAATTGATAGATTGTTGTTTAGAAAGATGTCGATGACATTGTTGTTTGAAATGAGGGGGCGCCATATTAGACAAGAAGAAGAAGAAGAAGTCAAAACGGAAAGAAGAGAAGATATGCGATTGCGCAGTACGTGATGGACATATGGAAGTGATTAGGTGAGATGAGATGGGACAAGGAGGCAACACAAACCGATTGGAAAAATTTCCAAAAGGTAAAATGAGAAGATGAAGGCATTTTGTGGGTGAGGGGTAGCGGCTAGCAAAGAATACGAACATTGACCGAAAGGATGAATTACGGGTTAGAAACAAGAATCAACCATGGGAACCGATTGGAACAAAAATAGGGAGGGAGGGGAGAGGATGAGACCATAGGGGTTTTGGTTCAAATTATTGCGAAGCAGAGGAAAGGCTGATTACCCCATTTCTTCAGATAAAAGAAGAGTCCAAAAGTTAGTTCATAATTATCTCAATTAGTTAAATATTGGTCAGTTTATAAAATGCATTAAAGTGTACGAGAAAGATTTGGGTCTTTGAAAATCAATATTACCGTATTTGTTCCAATAGAATCCCACCCACTTTGATATCAATTATCTCGGTTCCTGTGAGAGATATCAAAAATTGGTCAACTGATAAAATGTTTGTGACATTACAGTTTGGCTGTAAACAACTTTTGTATATCTTTTACGGGAACCGAGAAACATTGGCTCAAAGTTAAAGTGAGAGGAGCTCTAGAAAAATGGTAGCTTACCACCCCTAATTAGGAAGAAAAAACTCATTTGGTCCATACTTAAATATTAATAAGGATATCAAAACTGATTTCACCTATTTACAGACCCTAACCAATAATCAAATCAAAATTTCGGCATTACGAAAAAATTTATGCCTGGTAAAAATGATAAACCTCATCAAAAACAAAAGTTAGGACAAGGAGGTTTATGTTTTTGTAACTATCGTAAAATACCAAAATCTATTAT</canonical>
            <polymorphic>CGAAATGGTTTTTTTTTGTCGATTACGCAATTGATAGATTGTTGTTTAGAAAGATGTCGATGACATTGTTGTTTGAAATGAGGGGGCGCCATATTAGACAAGAAGAAGAAGAAGAAGTCAAAACGGAAAGAAGAGAAGATATGCGATTGCGCAGTACGTGATGGACATATGGAAGTGATTAGGTGAGATGAGATGGGACAAGGAGGCAACACAAACCGATTGGAAAAATTTCCAAAAGGTAAAATGAGAAGATGAAGGCATTTTGTGGGTGAGGGGTAGCGGCTAGCAAAGAATACGAACATTGACCGAAAGGATGAATTACGGGTTAGAAACAAGAATCAACCATGGGAACCGATTGGAACAAAAATAGGGAGGGAGGGGAGAGGATGAGACCATAGGGGTTTTGGTTCAAATTATTGCGAAGCAGAGGAAAGGCTGATTACCCCATTTCTTCAGATAAAAGAAGAGTCCAAAAGTTAGTTCATAATTATCTCAATTARTTAAATATTGGTCAGTTTATAAAATGCATTAAAGTGTACGAGAAAGATTTGGGTCTTTGAAAATCAATATTACCGTATTTGTTCCAATAGAATCCCACCCACTTTGATATCAATTATCTCGGTTCCTGTGAGAGATATCAAAAATTGGTCAACTGATAAAATGTTTGTGACATTACAGTTTGGCTGTAAACAACTTTTGTATATCTTTTACGGGAACCGAGAAACATTGGCTCAAAGTTAAAGTGAGAGGAGCTCTAGAAAAATGGTAGCTTACCACCCCTAATTAGGAAGAAAAAACTCATTTGGTCCATACTTAAATATTAATAAGGATATCAAAACTGATTTCACCTATTTACAGACCCTAACCAATAATCAAATCAAAATTTCGGCATTACGAAAAAATTTATGCCTGGTAAAAATGATAAACCTCATCAAAAACAAAAGTTAGGACAAGGAGGTTTATGTTTTTGTAACTATCGTAAAATACCAAAATCTATTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTACGGGTTAGAAACAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>GATTTTCAAAGACCCAAATCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTACGGGTTAGAAACAAGAATCAACCATGGGAACCGATTGGAACAAAAATAGGGAGGGAGGGGAGAGGATGAGACCATAGGGGTTTTGGTTCAAATTATTGCGAAGCAGAGGAAAGGCTGATTACCCCATTTCTTCAGATAAAAGAAGAGTCCAAAAGTTAGTTCATAATTATCTCAATTAGTTAAATATTGGTCAGTTTATAAAATGCATTAAAGTGTACGAGAAAGATTTGGGTCTTTGAAAATC</canonical_amplicon>
		<polymorphic_amplicon>AATTACGGGTTAGAAACAAGAATCAACCATGGGAACCGATTGGAACAAAAATAGGGAGGGAGGGGAGAGGATGAGACCATAGGGGTTTTGGTTCAAATTATTGCGAAGCAGAGGAAAGGCTGATTACCCCATTTCTTCAGATAAAAGAAGAGTCCAAAAGTTAGTTCATAATTATCTCAATTARTTAAATATTGGTCAGTTTATAAAATGCATTAAAGTGTACGAGAAAGATTTGGGTCTTTGAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30477</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>645384</contig_pos>
        <strand>+</strand>
        <context>TTCTACGTCT[G/T]GTACCTCTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTATGGGCGGTACTATAACTGCCTTCTTGATTGTTAACTTCTACGTCT</left_flank>
        <right_flank>GTACCTCTAGCTTTCTGACAGGACATCGAAACCTCGAAAATCCCTATCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGTCCTTGAACCGGAAGACGTCGACTTCTCCTCTTTTCGTTTGATTAGTGGAATATATCCATGAGAACGCCTTCTTCTCACAAAACGGAACAAAATGAGGGATGGGTGATGTCTAATGGGCGGTCTGTGAGATGAAAAACATAGAAAGAGAGGGAGAATTAGTTGTTGTTTGTGTGGTTCTCATAATGTTTCCATTCTCTTCTTATCTCCCTTATCCCTCACTTATTTTTCCCTCTTAGCCGGGTTATCCGTTCTTTTTTCTCTAGTTCCTTGTGGTCAAGAGGTCCTAACTTTAGTTTTTTGAAGCTAGATACGGTACCATTAAAACTTATGAATCTCATTTCAGAACCTTGAAGCTGTACTAAAAACAAAAAACTGCGTCTTATATTCTTACCTTTGGAGAACTCAAAACCAAATGTTCTTTTCCTTTTTTTTCTTTTTTTTTAAATTTTATGGGCGGTACTATAACTGCCTTCTTGATTGTTAACTTCTACGTCTGGTACCTCTAGCTTTCTGACAGGACATCGAAACCTCGAAAATCCCTATCAGGCCACTTATTCCCAAATTAAGCACGCCTGACTAACTCCTCTCTTAACATTGACCATCCATCTTACACAATTTTTTTCATTTTATTACTATTGGTAAACATCACCTGGCCTCAACTTTTTACCTACCATCTGCTGAGATATTAGCCATTTTTTGGTGTCTAATTCTCGTTTTCTCCTTTTCCTACCCGCTTCTCCTTGATTTATTGACATAAGAAAGACAGGAAAGAAGGCAAAAAAAATCAGATCATCGGTTTTCTCTTTAGTTCACTCTATTTGAGTTGTTTGAATTTCGACCCAGTTTGAGAAAGAGCATCTAGTCGGTGTGATCGGTTGTTTTTTTCCTATGGACCTGTGGTTTTACCAGGGTTAACCAGACTGTCAAAAGACACACTTCATTCTCTATTCTTCACATTTCGAATTAGAGAATCCCACCGACGTCGTCCTCTTTGGA</canonical>
            <polymorphic>CCGTCCTTGAACCGGAAGACGTCGACTTCTCCTCTTTTCGTTTGATTAGTGGAATATATCCATGAGAACGCCTTCTTCTCACAAAACGGAACAAAATGAGGGATGGGTGATGTCTAATGGGCGGTCTGTGAGATGAAAAACATAGAAAGAGAGGGAGAATTAGTTGTTGTTTGTGTGGTTCTCATAATGTTTCCATTCTCTTCTTATCTCCCTTATCCCTCACTTATTTTTCCCTCTTAGCCGGGTTATCCGTTCTTTTTTCTCTAGTTCCTTGTGGTCAAGAGGTCCTAACTTTAGTTTTTTGAAGCTAGATACGGTACCATTAAAACTTATGAATCTCATTTCAGAACCTTGAAGCTGTACTAAAAACAAAAAACTGCGTCTTATATTCTTACCTTTGGAGAACTCAAAACCAAATGTTCTTTTCCTTTTTTTTCTTTTTTTTTAAATTTTATGGGCGGTACTATAACTGCCTTCTTGATTGTTAACTTCTACGTCTKGTACCTCTAGCTTTCTGACAGGACATCGAAACCTCGAAAATCCCTATCAGGCCACTTATTCCCAAATTAAGCACGCCTGACTAACTCCTCTCTTAACATTGACCATCCATCTTACACAATTTTTTTCATTTTATTACTATTGGTAAACATCACCTGGCCTCAACTTTTTACCTACCATCTGCTGAGATATTAGCCATTTTTTGGTGTCTAATTCTCGTTTTCTCCTTTTCCTACCCGCTTCTCCTTGATTTATTGACATAAGAAAGACAGGAAAGAAGGCAAAAAAAATCAGATCATCGGTTTTCTCTTTAGTTCACTCTATTTGAGTTGTTTGAATTTCGACCCAGTTTGAGAAAGAGCATCTAGTCGGTGTGATCGGTTGTTTTTTTCCTATGGACCTGTGGTTTTACCAGGGTTAACCAGACTGTCAAAAGACACACTTCATTCTCTATTCTTCACATTTCGAATTAGAGAATCCCACCGACGTCGTCCTCTTTGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGTACC</site>
                <isoschizomers>
                    <enzyme>Acc65I</enzyme>
                    <enzyme>Asp718I</enzyme>
                    <enzyme>KpnI</enzyme>
                </isoschizomers>
                <canonical_bands>500 316 184</canonical_bands>
                <polymorphic_bands>684 316</polymorphic_bands>
            </assay>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>500 316 184</canonical_bands>
                <polymorphic_bands>684 316</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>498 318 184</canonical_bands>
                <polymorphic_bands>682 318</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTTATGGGCGGTACTATAAC</pcr_primer_p1>
		<pcr_primer_p2>TAATATCTCAGCAGATGGTAGGT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATTTTATGGGCGGTACTATAACTGCCTTCTTGATTGTTAACTTCTACGTCTGGTACCTCTAGCTTTCTGACAGGACATCGAAACCTCGAAAATCCCTATCAGGCCACTTATTCCCAAATTAAGCACGCCTGACTAACTCCTCTCTTAACATTGACCATCCATCTTACACAATTTTTTTCATTTTATTACTATTGGTAAACATCACCTGGCCTCAACTTTTTACCTACCATCTGCTGAGATATTA</canonical_amplicon>
		<polymorphic_amplicon>AATTTTATGGGCGGTACTATAACTGCCTTCTTGATTGTTAACTTCTACGTCTKGTACCTCTAGCTTTCTGACAGGACATCGAAACCTCGAAAATCCCTATCAGGCCACTTATTCCCAAATTAAGCACGCCTGACTAACTCCTCTCTTAACATTGACCATCCATCTTACACAATTTTTTTCATTTTATTACTATTGGTAAACATCACCTGGCCTCAACTTTTTACCTACCATCTGCTGAGATATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30478</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>645419</contig_pos>
        <strand>+</strand>
        <context>ATCGAAACCT[C/T]GAAAATCCCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAACTTCTACGTCTGGTACCTCTAGCTTTCTGACAGGACATCGAAACCT</left_flank>
        <right_flank>GAAAATCCCTATCAGGCCACTTATTCCCAAATTAAGCACGCCTGACTAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGTTTGATTAGTGGAATATATCCATGAGAACGCCTTCTTCTCACAAAACGGAACAAAATGAGGGATGGGTGATGTCTAATGGGCGGTCTGTGAGATGAAAAACATAGAAAGAGAGGGAGAATTAGTTGTTGTTTGTGTGGTTCTCATAATGTTTCCATTCTCTTCTTATCTCCCTTATCCCTCACTTATTTTTCCCTCTTAGCCGGGTTATCCGTTCTTTTTTCTCTAGTTCCTTGTGGTCAAGAGGTCCTAACTTTAGTTTTTTGAAGCTAGATACGGTACCATTAAAACTTATGAATCTCATTTCAGAACCTTGAAGCTGTACTAAAAACAAAAAACTGCGTCTTATATTCTTACCTTTGGAGAACTCAAAACCAAATGTTCTTTTCCTTTTTTTTCTTTTTTTTTAAATTTTATGGGCGGTACTATAACTGCCTTCTTGATTGTTAACTTCTACGTCTGGTACCTCTAGCTTTCTGACAGGACATCGAAACCTCGAAAATCCCTATCAGGCCACTTATTCCCAAATTAAGCACGCCTGACTAACTCCTCTCTTAACATTGACCATCCATCTTACACAATTTTTTTCATTTTATTACTATTGGTAAACATCACCTGGCCTCAACTTTTTACCTACCATCTGCTGAGATATTAGCCATTTTTTGGTGTCTAATTCTCGTTTTCTCCTTTTCCTACCCGCTTCTCCTTGATTTATTGACATAAGAAAGACAGGAAAGAAGGCAAAAAAAATCAGATCATCGGTTTTCTCTTTAGTTCACTCTATTTGAGTTGTTTGAATTTCGACCCAGTTTGAGAAAGAGCATCTAGTCGGTGTGATCGGTTGTTTTTTTCCTATGGACCTGTGGTTTTACCAGGGTTAACCAGACTGTCAAAAGACACACTTCATTCTCTATTCTTCACATTTCGAATTAGAGAATCCCACCGACGTCGTCCTCTTTGGAAGAGGATGAATTGAGTGTCTTCCTTAAGAGAAATA</canonical>
            <polymorphic>TTTCGTTTGATTAGTGGAATATATCCATGAGAACGCCTTCTTCTCACAAAACGGAACAAAATGAGGGATGGGTGATGTCTAATGGGCGGTCTGTGAGATGAAAAACATAGAAAGAGAGGGAGAATTAGTTGTTGTTTGTGTGGTTCTCATAATGTTTCCATTCTCTTCTTATCTCCCTTATCCCTCACTTATTTTTCCCTCTTAGCCGGGTTATCCGTTCTTTTTTCTCTAGTTCCTTGTGGTCAAGAGGTCCTAACTTTAGTTTTTTGAAGCTAGATACGGTACCATTAAAACTTATGAATCTCATTTCAGAACCTTGAAGCTGTACTAAAAACAAAAAACTGCGTCTTATATTCTTACCTTTGGAGAACTCAAAACCAAATGTTCTTTTCCTTTTTTTTCTTTTTTTTTAAATTTTATGGGCGGTACTATAACTGCCTTCTTGATTGTTAACTTCTACGTCTGGTACCTCTAGCTTTCTGACAGGACATCGAAACCTYGAAAATCCCTATCAGGCCACTTATTCCCAAATTAAGCACGCCTGACTAACTCCTCTCTTAACATTGACCATCCATCTTACACAATTTTTTTCATTTTATTACTATTGGTAAACATCACCTGGCCTCAACTTTTTACCTACCATCTGCTGAGATATTAGCCATTTTTTGGTGTCTAATTCTCGTTTTCTCCTTTTCCTACCCGCTTCTCCTTGATTTATTGACATAAGAAAGACAGGAAAGAAGGCAAAAAAAATCAGATCATCGGTTTTCTCTTTAGTTCACTCTATTTGAGTTGTTTGAATTTCGACCCAGTTTGAGAAAGAGCATCTAGTCGGTGTGATCGGTTGTTTTTTTCCTATGGACCTGTGGTTTTACCAGGGTTAACCAGACTGTCAAAAGACACACTTCATTCTCTATTCTTCACATTTCGAATTAGAGAATCCCACCGACGTCGTCCTCTTTGGAAGAGGATGAATTGAGTGTCTTCCTTAAGAGAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>492 305 124 71 8</canonical_bands>
                <polymorphic_bands>492 313 124 71</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTATGGGCGGTACTATAACT</pcr_primer_p1>
		<pcr_primer_p2>TAATATCTCAGCAGATGGTAGGT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATTTTATGGGCGGTACTATAACTGCCTTCTTGATTGTTAACTTCTACGTCTGGTACCTCTAGCTTTCTGACAGGACATCGAAACCTCGAAAATCCCTATCAGGCCACTTATTCCCAAATTAAGCACGCCTGACTAACTCCTCTCTTAACATTGACCATCCATCTTACACAATTTTTTTCATTTTATTACTATTGGTAAACATCACCTGGCCTCAACTTTTTACCTACCATCTGCTGAGATATTA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTATGGGCGGTACTATAACTGCCTTCTTGATTGTTAACTTCTACGTCTGGTACCTCTAGCTTTCTGACAGGACATCGAAACCTYGAAAATCCCTATCAGGCCACTTATTCCCAAATTAAGCACGCCTGACTAACTCCTCTCTTAACATTGACCATCCATCTTACACAATTTTTTTCATTTTATTACTATTGGTAAACATCACCTGGCCTCAACTTTTTACCTACCATCTGCTGAGATATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30479</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>645831</contig_pos>
        <strand>+</strand>
        <context>ACACTTCATT[A/C]TCTATTCTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACCTGTGGTTTTACCAGGGTTAACCAGACTGTCAAAAGACACACTTCATT</left_flank>
        <right_flank>TCTATTCTTCACATTTCGAATTAGAGAATCCCACCGACGTCGTCCTCTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTATGGGCGGTACTATAACTGCCTTCTTGATTGTTAACTTCTACGTCTGGTACCTCTAGCTTTCTGACAGGACATCGAAACCTCGAAAATCCCTATCAGGCCACTTATTCCCAAATTAAGCACGCCTGACTAACTCCTCTCTTAACATTGACCATCCATCTTACACAATTTTTTTCATTTTATTACTATTGGTAAACATCACCTGGCCTCAACTTTTTACCTACCATCTGCTGAGATATTAGCCATTTTTTGGTGTCTAATTCTCGTTTTCTCCTTTTCCTACCCGCTTCTCCTTGATTTATTGACATAAGAAAGACAGGAAAGAAGGCAAAAAAAATCAGATCATCGGTTTTCTCTTTAGTTCACTCTATTTGAGTTGTTTGAATTTCGACCCAGTTTGAGAAAGAGCATCTAGTCGGTGTGATCGGTTGTTTTTTTCCTATGGACCTGTGGTTTTACCAGGGTTAACCAGACTGTCAAAAGACACACTTCATTCTCTATTCTTCACATTTCGAATTAGAGAATCCCACCGACGTCGTCCTCTTTGGAAGAGGATGAATTGAGTGTCTTCCTTAAGAGAAATAGTATAAGTTTTAGAGAGAATTAGACACGAATAGGGGTGTCCTTCTTTTTTGTCCGACAACAGTAATCATCTTCGAAAGGGAGAAAAACGGACGTACATAGAGAGACTTACACACATACACCGAAATTTAAAATCGTGAATGAGTTTTCAATGGATGAGGCTTTAGTGGGTTTTGAGAAGTTTGTGGTTTGAGAGTTTATAGAAAATATATCTGGCTATTTATGCAATTAGTGGTTTTGAGGATTTCGAGGTTGTTGGATTTTTAAAGGATTTTTGGAGCATTTCTAGGTTTTTAGGTCATTAAGCTCAAATGTTTTCCAGTTAGGTTTGATTAGGAGACGACTTCAAACCTTTTAAACTTTCCTAATTTGTGGATTTCCAGTTCGTTTTCAAAACATTTCAGACAATAAGTC</canonical>
            <polymorphic>AATTTTATGGGCGGTACTATAACTGCCTTCTTGATTGTTAACTTCTACGTCTGGTACCTCTAGCTTTCTGACAGGACATCGAAACCTCGAAAATCCCTATCAGGCCACTTATTCCCAAATTAAGCACGCCTGACTAACTCCTCTCTTAACATTGACCATCCATCTTACACAATTTTTTTCATTTTATTACTATTGGTAAACATCACCTGGCCTCAACTTTTTACCTACCATCTGCTGAGATATTAGCCATTTTTTGGTGTCTAATTCTCGTTTTCTCCTTTTCCTACCCGCTTCTCCTTGATTTATTGACATAAGAAAGACAGGAAAGAAGGCAAAAAAAATCAGATCATCGGTTTTCTCTTTAGTTCACTCTATTTGAGTTGTTTGAATTTCGACCCAGTTTGAGAAAGAGCATCTAGTCGGTGTGATCGGTTGTTTTTTTCCTATGGACCTGTGGTTTTACCAGGGTTAACCAGACTGTCAAAAGACACACTTCATTMTCTATTCTTCACATTTCGAATTAGAGAATCCCACCGACGTCGTCCTCTTTGGAAGAGGATGAATTGAGTGTCTTCCTTAAGAGAAATAGTATAAGTTTTAGAGAGAATTAGACACGAATAGGGGTGTCCTTCTTTTTTGTCCGACAACAGTAATCATCTTCGAAAGGGAGAAAAACGGACGTACATAGAGAGACTTACACACATACACCGAAATTTAAAATCGTGAATGAGTTTTCAATGGATGAGGCTTTAGTGGGTTTTGAGAAGTTTGTGGTTTGAGAGTTTATAGAAAATATATCTGGCTATTTATGCAATTAGTGGTTTTGAGGATTTCGAGGTTGTTGGATTTTTAAAGGATTTTTGGAGCATTTCTAGGTTTTTAGGTCATTAAGCTCAAATGTTTTCCAGTTAGGTTTGATTAGGAGACGACTTCAAACCTTTTAAACTTTCCTAATTTGTGGATTTCCAGTTCGTTTTCAAAACATTTCAGACAATAAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCATCGGTTTTCTCTTTAGTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCTTAAGGAAGACACTCAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GATCATCGGTTTTCTCTTTAGTTCACTCTATTTGAGTTGTTTGAATTTCGACCCAGTTTGAGAAAGAGCATCTAGTCGGTGTGATCGGTTGTTTTTTTCCTATGGACCTGTGGTTTTACCAGGGTTAACCAGACTGTCAAAAGACACACTTCATTCTCTATTCTTCACATTTCGAATTAGAGAATCCCACCGACGTCGTCCTCTTTGGAAGAGGATGAATTGAGTGTCTTCCTTAAGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>GATCATCGGTTTTCTCTTTAGTTCACTCTATTTGAGTTGTTTGAATTTCGACCCAGTTTGAGAAAGAGCATCTAGTCGGTGTGATCGGTTGTTTTTTTCCTATGGACCTGTGGTTTTACCAGGGTTAACCAGACTGTCAAAAGACACACTTCATTMTCTATTCTTCACATTTCGAATTAGAGAATCCCACCGACGTCGTCCTCTTTGGAAGAGGATGAATTGAGTGTCTTCCTTAAGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30480</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>646098</contig_pos>
        <strand>+</strand>
        <context>GTTTTGAGAA[A/G]KTTGTGGTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATCGTGAATGAGTTTTCAATGGATGAGGCTTTAGTGGGTTTTGAGAA</left_flank>
        <right_flank>TTTGTGGTTTGAGAGTTTATAGAAAATATATCTGGCTATTTATGCAATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTTTTCTCCTTTTCCTACCCGCTTCTCCTTGATTTATTGACATAAGAAAGACAGGAAAGAAGGCAAAAAAAATCAGATCATCGGTTTTCTCTTTAGTTCACTCTATTTGAGTTGTTTGAATTTCGACCCAGTTTGAGAAAGAGCATCTAGTCGGTGTGATCGGTTGTTTTTTTCCTATGGACCTGTGGTTTTACCAGGGTTAACCAGACTGTCAAAAGACACACTTCATTCTCTATTCTTCACATTTCGAATTAGAGAATCCCACCGACGTCGTCCTCTTTGGAAGAGGATGAATTGAGTGTCTTCCTTAAGAGAAATAGTATAAGTTTTAGAGAGAATTAGACACGAATAGGGGTGTCCTTCTTTTTTGTCCGACAACAGTAATCATCTTCGAAAGGGAGAAAAACGGACGTACATAGAGAGACTTACACACATACACCGAAATTTAAAATCGTGAATGAGTTTTCAATGGATGAGGCTTTAGTGGGTTTTGAGAAGTTTGTGGTTTGAGAGTTTATAGAAAATATATCTGGCTATTTATGCAATTAGTGGTTTTGAGGATTTCGAGGTTGTTGGATTTTTAAAGGATTTTTGGAGCATTTCTAGGTTTTTAGGTCATTAAGCTCAAATGTTTTCCAGTTAGGTTTGATTAGGAGACGACTTCAAACCTTTTAAACTTTCCTAATTTGTGGATTTCCAGTTCGTTTTCAAAACATTTCAGACAATAAGTCAGATCAAAAAGTTACCAACATCTTCCAAAAAATCGCCGTTATAATATGTTTTCCCTTTTCATTTGCGTTTTTGAGTGGCTGTGTTTCTTTAGCTTATTGTCCCCTCACAGGTAGTTCCTCTCACTATTTGTTTGTATTTTTTCGGCAACAAAACACTATTCCAAATACAAATACACACACTTTTTTCTCGCTTTTCGTTAGCGTAGCAGCTAGGAAAAAACGAAGAAAAAAACGCTAAATTTTTATGGATACTTACTCTATCACTCT</canonical>
            <polymorphic>TCGTTTTCTCCTTTTCCTACCCGCTTCTCCTTGATTTATTGACATAAGAAAGACAGGAAAGAAGGCAAAAAAAATCAGATCATCGGTTTTCTCTTTAGTTCACTCTATTTGAGTTGTTTGAATTTCGACCCAGTTTGAGAAAGAGCATCTAGTCGGTGTGATCGGTTGTTTTTTTCCTATGGACCTGTGGTTTTACCAGGGTTAACCAGACTGTCAAAAGACACACTTCATTCTCTATTCTTCACATTTCGAATTAGAGAATCCCACCGACGTCGTCCTCTTTGGAAGAGGATGAATTGAGTGTCTTCCTTAAGAGAAATAGTATAAGTTTTAGAGAGAATTAGACACGAATAGGGGTGTCCTTCTTTTTTGTCCGACAACAGTAATCATCTTCGAAAGGGAGAAAAACGGACGTACATAGAGAGACTTACACACATACACCGAAATTTAAAATCGTGAATGAGTTTTCAATGGATGAGGCTTTAGTGGGTTTTGAGAARTTTGTGGTTTGAGAGTTTATAGAAAATATATCTGGCTATTTATGCAATTAGTGGTTTTGAGGATTTCGAGGTTGTTGGATTTTTAAAGGATTTTTGGAGCATTTCTAGGTTTTTAGGTCATTAAGCTCAAATGTTTTCCAGTTAGGTTTGATTAGGAGACGACTTCAAACCTTTTAAACTTTCCTAATTTGTGGATTTCCAGTTCGTTTTCAAAACATTTCAGACAATAAGTCAGATCAAAAAGTTACCAACATCTTCCAAAAAATCGCCGTTATAATATGTTTTCCCTTTTCATTTGCGTTTTTGAGTGGCTGTGTTTCTTTAGCTTATTGTCCCCTCACAGGTAGTTCCTCTCACTATTTGTTTGTATTTTTTCGGCAACAAAACACTATTCCAAATACAAATACACACACTTTTTTCTCGCTTTTCGTTAGCGTAGCAGCTAGGAAAAAACGAAGAAAAAAACGCTAAATTTTTATGGATACTTACTCTATCACTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGGACGTACATAGAGAGACTTA</pcr_primer_p1>
		<pcr_primer_p2>TAATCAAACCTAACTGGAAAACA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACGGACGTACATAGAGAGACTTACACACATACACCGAAATTTAAAATCGTGAATGAGTTTTCAATGGATGAGGCTTTAGTGGGTTTTGAGAAGTTTGTGGTTTGAGAGTTTATAGAAAATATATCTGGCTATTTATGCAATTAGTGGTTTTGAGGATTTCGAGGTTGTTGGATTTTTAAAGGATTTTTGGAGCATTTCTAGGTTTTTAGGTCATTAAGCTCAAATGTTTTCCAGTTAGGTTTGATTA</canonical_amplicon>
		<polymorphic_amplicon>ACGGACGTACATAGAGAGACTTACACACATACACCGAAATTTAAAATCGTGAATGAGTTTTCAATGGATGAGGCTTTAGTGGGTTTTGAGAARTTTGTGGTTTGAGAGTTTATAGAAAATATATCTGGCTATTTATGCAATTAGTGGTTTTGAGGATTTCGAGGTTGTTGGATTTTTAAAGGATTTTTGGAGCATTTCTAGGTTTTTAGGTCATTAAGCTCAAATGTTTTCCAGTTAGGTTTGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30481</snp_id>
        <super_contig>c005301227.Contig1</super_contig>
        <contig_pos>646099</contig_pos>
        <strand>+</strand>
        <context>TTTTGAGAAR[G/T]TTGTGGTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATCGTGAATGAGTTTTCAATGGATGAGGCTTTAGTGGGTTTTGAGAAG</left_flank>
        <right_flank>TTGTGGTTTGAGAGTTTATAGAAAATATATCTGGCTATTTATGCAATTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTTTTCTCCTTTTCCTACCCGCTTCTCCTTGATTTATTGACATAAGAAAGACAGGAAAGAAGGCAAAAAAAATCAGATCATCGGTTTTCTCTTTAGTTCACTCTATTTGAGTTGTTTGAATTTCGACCCAGTTTGAGAAAGAGCATCTAGTCGGTGTGATCGGTTGTTTTTTTCCTATGGACCTGTGGTTTTACCAGGGTTAACCAGACTGTCAAAAGACACACTTCATTCTCTATTCTTCACATTTCGAATTAGAGAATCCCACCGACGTCGTCCTCTTTGGAAGAGGATGAATTGAGTGTCTTCCTTAAGAGAAATAGTATAAGTTTTAGAGAGAATTAGACACGAATAGGGGTGTCCTTCTTTTTTGTCCGACAACAGTAATCATCTTCGAAAGGGAGAAAAACGGACGTACATAGAGAGACTTACACACATACACCGAAATTTAAAATCGTGAATGAGTTTTCAATGGATGAGGCTTTAGTGGGTTTTGAGAAGTTTGTGGTTTGAGAGTTTATAGAAAATATATCTGGCTATTTATGCAATTAGTGGTTTTGAGGATTTCGAGGTTGTTGGATTTTTAAAGGATTTTTGGAGCATTTCTAGGTTTTTAGGTCATTAAGCTCAAATGTTTTCCAGTTAGGTTTGATTAGGAGACGACTTCAAACCTTTTAAACTTTCCTAATTTGTGGATTTCCAGTTCGTTTTCAAAACATTTCAGACAATAAGTCAGATCAAAAAGTTACCAACATCTTCCAAAAAATCGCCGTTATAATATGTTTTCCCTTTTCATTTGCGTTTTTGAGTGGCTGTGTTTCTTTAGCTTATTGTCCCCTCACAGGTAGTTCCTCTCACTATTTGTTTGTATTTTTTCGGCAACAAAACACTATTCCAAATACAAATACACACACTTTTTTCTCGCTTTTCGTTAGCGTAGCAGCTAGGAAAAAACGAAGAAAAAAACGCTAAATTTTTATGGATACTTACTCTATCACTCTT</canonical>
            <polymorphic>CGTTTTCTCCTTTTCCTACCCGCTTCTCCTTGATTTATTGACATAAGAAAGACAGGAAAGAAGGCAAAAAAAATCAGATCATCGGTTTTCTCTTTAGTTCACTCTATTTGAGTTGTTTGAATTTCGACCCAGTTTGAGAAAGAGCATCTAGTCGGTGTGATCGGTTGTTTTTTTCCTATGGACCTGTGGTTTTACCAGGGTTAACCAGACTGTCAAAAGACACACTTCATTCTCTATTCTTCACATTTCGAATTAGAGAATCCCACCGACGTCGTCCTCTTTGGAAGAGGATGAATTGAGTGTCTTCCTTAAGAGAAATAGTATAAGTTTTAGAGAGAATTAGACACGAATAGGGGTGTCCTTCTTTTTTGTCCGACAACAGTAATCATCTTCGAAAGGGAGAAAAACGGACGTACATAGAGAGACTTACACACATACACCGAAATTTAAAATCGTGAATGAGTTTTCAATGGATGAGGCTTTAGTGGGTTTTGAGAAGKTTGTGGTTTGAGAGTTTATAGAAAATATATCTGGCTATTTATGCAATTAGTGGTTTTGAGGATTTCGAGGTTGTTGGATTTTTAAAGGATTTTTGGAGCATTTCTAGGTTTTTAGGTCATTAAGCTCAAATGTTTTCCAGTTAGGTTTGATTAGGAGACGACTTCAAACCTTTTAAACTTTCCTAATTTGTGGATTTCCAGTTCGTTTTCAAAACATTTCAGACAATAAGTCAGATCAAAAAGTTACCAACATCTTCCAAAAAATCGCCGTTATAATATGTTTTCCCTTTTCATTTGCGTTTTTGAGTGGCTGTGTTTCTTTAGCTTATTGTCCCCTCACAGGTAGTTCCTCTCACTATTTGTTTGTATTTTTTCGGCAACAAAACACTATTCCAAATACAAATACACACACTTTTTTCTCGCTTTTCGTTAGCGTAGCAGCTAGGAAAAAACGAAGAAAAAAACGCTAAATTTTTATGGATACTTACTCTATCACTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGGACGTACATAGAGAGACTTA</pcr_primer_p1>
		<pcr_primer_p2>TAATCAAACCTAACTGGAAAACA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACGGACGTACATAGAGAGACTTACACACATACACCGAAATTTAAAATCGTGAATGAGTTTTCAATGGATGAGGCTTTAGTGGGTTTTGAGAAGTTTGTGGTTTGAGAGTTTATAGAAAATATATCTGGCTATTTATGCAATTAGTGGTTTTGAGGATTTCGAGGTTGTTGGATTTTTAAAGGATTTTTGGAGCATTTCTAGGTTTTTAGGTCATTAAGCTCAAATGTTTTCCAGTTAGGTTTGATTA</canonical_amplicon>
		<polymorphic_amplicon>ACGGACGTACATAGAGAGACTTACACACATACACCGAAATTTAAAATCGTGAATGAGTTTTCAATGGATGAGGCTTTAGTGGGTTTTGAGAAGKTTGTGGTTTGAGAGTTTATAGAAAATATATCTGGCTATTTATGCAATTAGTGGTTTTGAGGATTTCGAGGTTGTTGGATTTTTAAAGGATTTTTGGAGCATTTCTAGGTTTTTAGGTCATTAAGCTCAAATGTTTTCCAGTTAGGTTTGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30482</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>7910</contig_pos>
        <strand>+</strand>
        <context>AAWATTCTCT[G/T]TTTTCTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCATATTTTCTGACTCACGGAATATAATTCTGTAAACAAAAAATTCTCT</left_flank>
        <right_flank>TTTTCTTTTTCCTGTTTTCAAAACTCAAATTGTATATAAAGACGATTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCCAAAAATAGGAAAAATAAATCATTTACTATACCGTAAACTGATAGAACGCCACCCAAATCGTGAACTTTGAGCTCATGTATCTCATTTTGTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGGTGATATCATGATAAACATTTTATCAGTTAACAACTTTTTGATATCTTCCAAAAGAAGTGAGATATATAAATTCAAAGCGGATGGTCCGGGTGGCGTTCTACTAGTGTGTTTACGGTAACTTTTATTATAGAAAATTGATGAAAAATTCAGCAGGAAAGTTAAAATTTTCAGATGTTCAATCAACAAGTTGTTTGCATAATCCTTCCAAATTCAGAACCAAACTTCAGAATCACGTCATCTGGTTCTCTTTCTAGAACTTTTTTTTGTTCCATTCAACGTTTTTTTGGTTTTGTCCCAAACTTTTTTCCTATTTGATTCATATTTTCTGACTCACGGAATATAATTCTGTAAACAAAAAATTCTCTTTTTTCTTTTTCCTGTTTTCAAAACTCAAATTGTATATAAAGACGATTTTCAGACTGAAAATCATAGGCAACGTTTTGAGCTTGGTATTTCCGTATATCCTCTAATAGATGCCCAGAGAAACCGTCAACTTGAGCTTAACTATCTCAATTCCTGTGAAAGATATCAAGAAGTGGTTAACTGATAAAATATTGATAATATTATGATAAACATTTTACCAATTGAGCACTTTTTGATATCTTTTACAGGAACTGAGATATATGGGCTCAAATTTGACGGTTTGAGTGGTTCACAGGAATCGAGATAATTGAGCTTGAAGTTGACACAATTCGAGTGGGCTTCTGATAGAGGTTATACGATAATGCTATTTATTGAGAAACCCTAAACTTTATCAATATCATTATCGAAAACTCCAGATTCCTAGAAATTGAAAACAATTTTTTTTTGAAATTTGTGCAGCTTTTCTGGTTTGGTCGTAACTTTTAAAATATTGCTTCAAATTT</canonical>
            <polymorphic>TCCCAAAAATAGGAAAAATAAATCATTTACTATACCGTAAACTGATAGAACGCCACCCAAATCGTGAACTTTGAGCTCATGTATCTCATTTTGTGTGAGAGATATCAAAAAGTGGTTAACTAATAAAATGTTGGTGATATCATGATAAACATTTTATCAGTTAACAACTTTTTGATATCTTCCAAAAGAAGTGAGATATATAAATTCAAAGCGGATGGTCCGGGTGGCGTTCTACTAGTGTGTTTACGGTAACTTTTATTATAGAAAATTGATGAAAAATTCAGCAGGAAAGTTAAAATTTTCAGATGTTCAATCAACAAGTTGTTTGCATAATCCTTCCAAATTCAGAACCAAACTTCAGAATCACGTCATCTGGTTCTCTTTCTAGAACTTTTTTTTGTTCCATTCAACGTTTTTTTGGTTTTGTCCCAAACTTTTTTCCTATTTGATTCATATTTTCTGACTCACGGAATATAATTCTGTAAACAAAAAATTCTCTKTTTTCTTTTTCCTGTTTTCAAAACTCAAATTGTATATAAAGACGATTTTCAGACTGAAAATCATAGGCAACGTTTTGAGCTTGGTATTTCCGTATATCCTCTAATAGATGCCCAGAGAAACCGTCAACTTGAGCTTAACTATCTCAATTCCTGTGAAAGATATCAAGAAGTGGTTAACTGATAAAATATTGATAATATTATGATAAACATTTTACCAATTGAGCACTTTTTGATATCTTTTACAGGAACTGAGATATATGGGCTCAAATTTGACGGTTTGAGTGGTTCACAGGAATCGAGATAATTGAGCTTGAAGTTGACACAATTCGAGTGGGCTTCTGATAGAGGTTATACGATAATGCTATTTATTGAGAAACCCTAAACTTTATCAATATCATTATCGAAAACTCCAGATTCCTAGAAATTGAAAACAATTTTTTTTTGAAATTTGTGCAGCTTTTCTGGTTTGGTCGTAACTTTTAAAATATTGCTTCAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTGCATAATCCTTCCAAAT</pcr_primer_p1>
		<pcr_primer_p2>ACGTTGCCTATGATTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTGCATAATCCTTCCAAATTCAGAACCAAACTTCAGAATCACGTCATCTGGTTCTCTTTCTAGAACTTTTTTTTGTTCCATTCAACGTTTTTTTGGTTTTGTCCCAAACTTTTTTCCTATTTGATTCATATTTTCTGACTCACGGAATATAATTCTGTAAACAAAAAATTCTCTTTTTTCTTTTTCCTGTTTTCAAAACTCAAATTGTATATAAAGACGATTTTCAGACTGAAAATCATAGGCAACGT</canonical_amplicon>
		<polymorphic_amplicon>GTTTGCATAATCCTTCCAAATTCAGAACCAAACTTCAGAATCACGTCATCTGGTTCTCTTTCTAGAACTTTTTTTTGTTCCATTCAACGTTTTTTTGGTTTTGTCCCAAACTTTTTTCCTATTTGATTCATATTTTCTGACTCACGGAATATAATTCTGTAAACAAAAAATTCTCTKTTTTCTTTTTCCTGTTTTCAAAACTCAAATTGTATATAAAGACGATTTTCAGACTGAAAATCATAGGCAACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30483</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>8077</contig_pos>
        <strand></strand>
        <context>aagatatcaa[G/A]aagtggttaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAAACCGTCAACTTGAGCTTAACTATCTCAATTCCTGTGAAAGATATCAA</left_flank>
        <right_flank>AAGTGGTTAACTGATAAAATATTGATAATATTATGATAAACATTTTACCA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTTGATATCTTCCAAAAGAAGTGAGATATATAAATTCAAAGCGGATGGTCCGGGTGGCGTTCTACTAGTGTGTTTACGGTAACTTTTATTATAGAAAATTGATGAAAAATTCAGCAGGAAAGTTAAAATTTTCAGATGTTCAATCAACAAGTTGTTTGCATAATCCTTCCAAATTCAGAACCAAACTTCAGAATCACGTCATCTGGTTCTCTTTCTAGAACTTTTTTTTGTTCCATTCAACGTTTTTTTGGTTTTGTCCCAAACTTTTTTCCTATTTGATTCATATTTTCTGACTCACGGAATATAATTCTGTAAACAAAAAATTCTCTTTTTTCTTTTTCCTGTTTTCAAAACTCAAATTGTATATAAAGACGATTTTCAGACTGAAAATCATAGGCAACGTTTTGAGCTTGGTATTTCCGTATATCCTCTAATAGATGCCCAGAGAAACCGTCAACTTGAGCTTAACTATCTCAATTCCTGTGAAAGATATCAAGAAGTGGTTAACTGATAAAATATTGATAATATTATGATAAACATTTTACCAATTGAGCACTTTTTGATATCTTTTACAGGAACTGAGATATATGGGCTCAAATTTGACGGTTTGAGTGGTTCACAGGAATCGAGATAATTGAGCTTGAAGTTGACACAATTCGAGTGGGCTTCTGATAGAGGTTATACGATAATGCTATTTATTGAGAAACCCTAAACTTTATCAATATCATTATCGAAAACTCCAGATTCCTAGAAATTGAAAACAATTTTTTTTTGAAATTTGTGCAGCTTTTCTGGTTTGGTCGTAACTTTTAAAATATTGCTTCAAATTTTGTGTAACCTATATTTCTGAATTTGTCTTGTTATGAGCTTCAAAATGAGAATAATCACAGCTGTGTTCAGATTTTTTTGGTTCTCTCGCTGGACCCATGCGCCTTTAAGACCAACAATAAGTCGTGTGACGTACGATTTGAAAGCTGAAAATCTCACAATTCTAACA</canonical>
            <polymorphic>CTTTTTGATATCTTCCAAAAGAAGTGAGATATATAAATTCAAAGCGGATGGTCCGGGTGGCGTTCTACTAGTGTGTTTACGGTAACTTTTATTATAGAAAATTGATGAAAAATTCAGCAGGAAAGTTAAAATTTTCAGATGTTCAATCAACAAGTTGTTTGCATAATCCTTCCAAATTCAGAACCAAACTTCAGAATCACGTCATCTGGTTCTCTTTCTAGAACTTTTTTTTGTTCCATTCAACGTTTTTTTGGTTTTGTCCCAAACTTTTTTCCTATTTGATTCATATTTTCTGACTCACGGAATATAATTCTGTAAACAAAAAATTCTCTTTTTTCTTTTTCCTGTTTTCAAAACTCAAATTGTATATAAAGACGATTTTCAGACTGAAAATCATAGGCAACGTTTTGAGCTTGGTATTTCCGTATATCCTCTAATAGATGCCCAGAGAAACCGTCAACTTGAGCTTAACTATCTCAATTCCTGTGAAAGATATCAARAAGTGGTTAACTGATAAAATATTGATAATATTATGATAAACATTTTACCAATTGAGCACTTTTTGATATCTTTTACAGGAACTGAGATATATGGGCTCAAATTTGACGGTTTGAGTGGTTCACAGGAATCGAGATAATTGAGCTTGAAGTTGACACAATTCGAGTGGGCTTCTGATAGAGGTTATACGATAATGCTATTTATTGAGAAACCCTAAACTTTATCAATATCATTATCGAAAACTCCAGATTCCTAGAAATTGAAAACAATTTTTTTTTGAAATTTGTGCAGCTTTTCTGGTTTGGTCGTAACTTTTAAAATATTGCTTCAAATTTTGTGTAACCTATATTTCTGAATTTGTCTTGTTATGAGCTTCAAAATGAGAATAATCACAGCTGTGTTCAGATTTTTTTGGTTCTCTCGCTGGACCCATGCGCCTTTAAGACCAACAATAAGTCGTGTGACGTACGATTTGAAAGCTGAAAATCTCACAATTCTAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>279 257 218 133 113</canonical_bands>
                <polymorphic_bands>412 257 218 113</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACGTTTTGAGCTTGGTAT</pcr_primer_p1>
		<pcr_primer_p2>GTTTAGGGTTTCTCAATAAATAGC</pcr_primer_p2>
		<pcr_amplicon_size>317</pcr_amplicon_size>
		<canonical_amplicon>CAACGTTTTGAGCTTGGTATTTCCGTATATCCTCTAATAGATGCCCAGAGAAACCGTCAACTTGAGCTTAACTATCTCAATTCCTGTGAAAGATATCAAGAAGTGGTTAACTGATAAAATATTGATAATATTATGATAAACATTTTACCAATTGAGCACTTTTTGATATCTTTTACAGGAACTGAGATATATGGGCTCAAATTTGACGGTTTGAGTGGTTCACAGGAATCGAGATAATTGAGCTTGAAGTTGACACAATTCGAGTGGGCTTCTGATAGAGGTTATACGATAATGCTATTTATTGAGAAACCCTAAAC</canonical_amplicon>
		<polymorphic_amplicon>CAACGTTTTGAGCTTGGTATTTCCGTATATCCTCTAATAGATGCCCAGAGAAACCGTCAACTTGAGCTTAACTATCTCAATTCCTGTGAAAGATATCAARAAGTGGTTAACTGATAAAATATTGATAATATTATGATAAACATTTTACCAATTGAGCACTTTTTGATATCTTTTACAGGAACTGAGATATATGGGCTCAAATTTGACGGTTTGAGTGGTTCACAGGAATCGAGATAATTGAGCTTGAAGTTGACACAATTCGAGTGGGCTTCTGATAGAGGTTATACGATAATGCTATTTATTGAGAAACCCTAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30484</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>15472</contig_pos>
        <strand>+</strand>
        <context>TTGGATTCTC[A/G]AAAAAAAAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCAAGTTTTTGATTTTAAAATCTACAATTTGTCAGTTTTGGATTCTC</left_flank>
        <right_flank>AAAAAAAAGCAAAAAAATCTGAACAAATTTCAAAAAGAATCGAAATTCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTCAAGCTAGAAGGGAACACATCTCAATAAGAATGAAATCCGAGAAGCCCCGCGCCCGTTTTTTTTGTGTGTATGGGGATATGTAGAGCACAAAAAAGGGCAGTTATGAGACAGAATAACACATTTTTATTGCGTTTTTTATTTCGTTTTTTATTTCTAAAATTGGAAAAAGAGGATATGCGTTTTGGGAACCTGAAGATGTATTGTTTTTACCGTTAAAACCAATGGAAGGCTACCCAAACCATTAAGTTTGAACCCATATAATTCAATTCTTGTGAAAGATATCAAAAAGTTGTTAACTGATAAAATATTGCTGATATTATGATAAACAATTTGTTAGTTAACCACTCTTTGATATCTTCTACAGAAAGTGAGATATATGGACTCAAAGTTAACAATCTGAGTGGCGTTATAGCAGAGTTTATACGGTAGATTTATTAATTTTTTTTTTCAAGTTTTTGATTTTAAAATCTACAATTTGTCAGTTTTGGATTCTCAAAAAAAAAGCAAAAAAATCTGAACAAATTTCAAAAAGAATCGAAATTCCAGCTCCTAGGAGCCCTTCCTTCTAGGAGCCGAGTTACAGCCTCTCGAAGTTTTGGAGAGACGCAGACAGTTAGAGTGTCTCGTCGTCTGCGCCTCTAGCCTCCGAAACTTCAAATGGCTGTTTCTCGGCTTCTATAACAGCTAGAAAAAAGAAAATTGAATGAAAATAATGAAAAATGTTTTGAAACAAAAAGAAACTTAGCTCATTTTTCTAGGATATGACCTTTTTTGGAATTGGAAAATGTTTTTAGAAATTTTTAGGTCCTTCACATTTCCTGGACCTGCCCAAAAAAGGTGGATTAGCTTCAAGAAAAAAGAAAGGTGTGAAACAATAGAAACAAAGCTTAAAAAGTCGAAAAAAAATGTGAAAAAAAATATTTTCTCCACTAGGAGCCAAAAATCTCATAACGCACATTTCCTCTGTCATTTTCCACTAGAAATGGGACGGGATT</canonical>
            <polymorphic>GTGTCAAGCTAGAAGGGAACACATCTCAATAAGAATGAAATCCGAGAAGCCCCGCGCCCGTTTTTTTTGTGTGTATGGGGATATGTAGAGCACAAAAAAGGGCAGTTATGAGACAGAATAACACATTTTTATTGCGTTTTTTATTTCGTTTTTTATTTCTAAAATTGGAAAAAGAGGATATGCGTTTTGGGAACCTGAAGATGTATTGTTTTTACCGTTAAAACCAATGGAAGGCTACCCAAACCATTAAGTTTGAACCCATATAATTCAATTCTTGTGAAAGATATCAAAAAGTTGTTAACTGATAAAATATTGCTGATATTATGATAAACAATTTGTTAGTTAACCACTCTTTGATATCTTCTACAGAAAGTGAGATATATGGACTCAAAGTTAACAATCTGAGTGGCGTTATAGCAGAGTTTATACGGTAGATTTATTAATTTTTTTTTTCAAGTTTTTGATTTTAAAATCTACAATTTGTCAGTTTTGGATTCTCRAAAAAAAAGCAAAAAAATCTGAACAAATTTCAAAAAGAATCGAAATTCCAGCTCCTAGGAGCCCTTCCTTCTAGGAGCCGAGTTACAGCCTCTCGAAGTTTTGGAGAGACGCAGACAGTTAGAGTGTCTCGTCGTCTGCGCCTCTAGCCTCCGAAACTTCAAATGGCTGTTTCTCGGCTTCTATAACAGCTAGAAAAAAGAAAATTGAATGAAAATAATGAAAAATGTTTTGAAACAAAAAGAAACTTAGCTCATTTTTCTAGGATATGACCTTTTTTGGAATTGGAAAATGTTTTTAGAAATTTTTAGGTCCTTCACATTTCCTGGACCTGCCCAAAAAAGGTGGATTAGCTTCAAGAAAAAAGAAAGGTGTGAAACAATAGAAACAAAGCTTAAAAAGTCGAAAAAAAATGTGAAAAAAAATATTTTCTCCACTAGGAGCCAAAAATCTCATAACGCACATTTCCTCTGTCATTTTCCACTAGAAATGGGACGGGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACCTGAAGATGTATTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GCTGGAATTTCGATTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>362</pcr_amplicon_size>
		<canonical_amplicon>GAACCTGAAGATGTATTGTTTTTACCGTTAAAACCAATGGAAGGCTACCCAAACCATTAAGTTTGAACCCATATAATTCAATTCTTGTGAAAGATATCAAAAAGTTGTTAACTGATAAAATATTGCTGATATTATGATAAACAATTTGTTAGTTAACCACTCTTTGATATCTTCTACAGAAAGTGAGATATATGGACTCAAAGTTAACAATCTGAGTGGCGTTATAGCAGAGTTTATACGGTAGATTTATTAATTTTTTTTTTCAAGTTTTTGATTTTAAAATCTACAATTTGTCAGTTTTGGATTCTCAAAAAAAAAGCAAAAAAATCTGAACAAATTTCAAAAAGAATCGAAATTCCAGC</canonical_amplicon>
		<polymorphic_amplicon>GAACCTGAAGATGTATTGTTTTTACCGTTAAAACCAATGGAAGGCTACCCAAACCATTAAGTTTGAACCCATATAATTCAATTCTTGTGAAAGATATCAAAAAGTTGTTAACTGATAAAATATTGCTGATATTATGATAAACAATTTGTTAGTTAACCACTCTTTGATATCTTCTACAGAAAGTGAGATATATGGACTCAAAGTTAACAATCTGAGTGGCGTTATAGCAGAGTTTATACGGTAGATTTATTAATTTTTTTTTTCAAGTTTTTGATTTTAAAATCTACAATTTGTCAGTTTTGGATTCTCRAAAAAAAAGCAAAAAAATCTGAACAAATTTCAAAAAGAATCGAAATTCCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30485</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>15498</contig_pos>
        <strand></strand>
        <context>AATCTGAACA[A/G]ATTTCAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAATTTGTCAGTTTTGGATTCTCAAAAAAAAAGCAAAAAAATCTGAACA</left_flank>
        <right_flank>ATTTCAAAAAGAATCGAAATTCCAGCTCCTAGGAGCCCTTCCTTCTAGGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATAAGAATGAAATCCGAGAAGCCCCGCGCCCGTTTTTTTTGTGTGTATGGGGATATGTAGAGCACAAAAAAGGGCAGTTATGAGACAGAATAACACATTTTTATTGCGTTTTTTATTTCGTTTTTTATTTCTAAAATTGGAAAAAGAGGATATGCGTTTTGGGAACCTGAAGATGTATTGTTTTTACCGTTAAAACCAATGGAAGGCTACCCAAACCATTAAGTTTGAACCCATATAATTCAATTCTTGTGAAAGATATCAAAAAGTTGTTAACTGATAAAATATTGCTGATATTATGATAAACAATTTGTTAGTTAACCACTCTTTGATATCTTCTACAGAAAGTGAGATATATGGACTCAAAGTTAACAATCTGAGTGGCGTTATAGCAGAGTTTATACGGTAGATTTATTAATTTTTTTTTTCAAGTTTTTGATTTTAAAATCTACAATTTGTCAGTTTTGGATTCTCAAAAAAAAAGCAAAAAAATCTGAACAAATTTCAAAAAGAATCGAAATTCCAGCTCCTAGGAGCCCTTCCTTCTAGGAGCCGAGTTACAGCCTCTCGAAGTTTTGGAGAGACGCAGACAGTTAGAGTGTCTCGTCGTCTGCGCCTCTAGCCTCCGAAACTTCAAATGGCTGTTTCTCGGCTTCTATAACAGCTAGAAAAAAGAAAATTGAATGAAAATAATGAAAAATGTTTTGAAACAAAAAGAAACTTAGCTCATTTTTCTAGGATATGACCTTTTTTGGAATTGGAAAATGTTTTTAGAAATTTTTAGGTCCTTCACATTTCCTGGACCTGCCCAAAAAAGGTGGATTAGCTTCAAGAAAAAAGAAAGGTGTGAAACAATAGAAACAAAGCTTAAAAAGTCGAAAAAAAATGTGAAAAAAAATATTTTCTCCACTAGGAGCCAAAAATCTCATAACGCACATTTCCTCTGTCATTTTCCACTAGAAATGGGACGGGATTTCCTCTCCGGATTTCCGATTTTTATG</canonical>
            <polymorphic>CAATAAGAATGAAATCCGAGAAGCCCCGCGCCCGTTTTTTTTGTGTGTATGGGGATATGTAGAGCACAAAAAAGGGCAGTTATGAGACAGAATAACACATTTTTATTGCGTTTTTTATTTCGTTTTTTATTTCTAAAATTGGAAAAAGAGGATATGCGTTTTGGGAACCTGAAGATGTATTGTTTTTACCGTTAAAACCAATGGAAGGCTACCCAAACCATTAAGTTTGAACCCATATAATTCAATTCTTGTGAAAGATATCAAAAAGTTGTTAACTGATAAAATATTGCTGATATTATGATAAACAATTTGTTAGTTAACCACTCTTTGATATCTTCTACAGAAAGTGAGATATATGGACTCAAAGTTAACAATCTGAGTGGCGTTATAGCAGAGTTTATACGGTAGATTTATTAATTTTTTTTTTCAAGTTTTTGATTTTAAAATCTACAATTTGTCAGTTTTGGATTCTCAAAAAAAAAGCAAAAAAATCTGAACARATTTCAAAAAGAATCGAAATTCCAGCTCCTAGGAGCCCTTCCTTCTAGGAGCCGAGTTACAGCCTCTCGAAGTTTTGGAGAGACGCAGACAGTTAGAGTGTCTCGTCGTCTGCGCCTCTAGCCTCCGAAACTTCAAATGGCTGTTTCTCGGCTTCTATAACAGCTAGAAAAAAGAAAATTGAATGAAAATAATGAAAAATGTTTTGAAACAAAAAGAAACTTAGCTCATTTTTCTAGGATATGACCTTTTTTGGAATTGGAAAATGTTTTTAGAAATTTTTAGGTCCTTCACATTTCCTGGACCTGCCCAAAAAAGGTGGATTAGCTTCAAGAAAAAAGAAAGGTGTGAAACAATAGAAACAAAGCTTAAAAAGTCGAAAAAAAATGTGAAAAAAAATATTTTCTCCACTAGGAGCCAAAAATCTCATAACGCACATTTCCTCTGTCATTTTCCACTAGAAATGGGACGGGATTTCCTCTCCGGATTTCCGATTTTTATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>499 257 226 18</canonical_bands>
                <polymorphic_bands>517 257 226</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>226 159 136 109 102 78 63 48 36 20 18 5</canonical_bands>
                <polymorphic_bands>226 159 136 109 102 78 66 63 36 20 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACCTGAAGATGTATTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AGCTAAGTTTCTTTTTGTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>562</pcr_amplicon_size>
		<canonical_amplicon>GAACCTGAAGATGTATTGTTTTTACCGTTAAAACCAATGGAAGGCTACCCAAACCATTAAGTTTGAACCCATATAATTCAATTCTTGTGAAAGATATCAAAAAGTTGTTAACTGATAAAATATTGCTGATATTATGATAAACAATTTGTTAGTTAACCACTCTTTGATATCTTCTACAGAAAGTGAGATATATGGACTCAAAGTTAACAATCTGAGTGGCGTTATAGCAGAGTTTATACGGTAGATTTATTAATTTTTTTTTTCAAGTTTTTGATTTTAAAATCTACAATTTGTCAGTTTTGGATTCTCAAAAAAAAAGCAAAAAAATCTGAACAAATTTCAAAAAGAATCGAAATTCCAGCTCCTAGGAGCCCTTCCTTCTAGGAGCCGAGTTACAGCCTCTCGAAGTTTTGGAGAGACGCAGACAGTTAGAGTGTCTCGTCGTCTGCGCCTCTAGCCTCCGAAACTTCAAATGGCTGTTTCTCGGCTTCTATAACAGCTAGAAAAAAGAAAATTGAATGAAAATAATGAAAAATGTTTTGAAACAAAAAGAAACTTAGCT</canonical_amplicon>
		<polymorphic_amplicon>GAACCTGAAGATGTATTGTTTTTACCGTTAAAACCAATGGAAGGCTACCCAAACCATTAAGTTTGAACCCATATAATTCAATTCTTGTGAAAGATATCAAAAAGTTGTTAACTGATAAAATATTGCTGATATTATGATAAACAATTTGTTAGTTAACCACTCTTTGATATCTTCTACAGAAAGTGAGATATATGGACTCAAAGTTAACAATCTGAGTGGCGTTATAGCAGAGTTTATACGGTAGATTTATTAATTTTTTTTTTCAAGTTTTTGATTTTAAAATCTACAATTTGTCAGTTTTGGATTCTCAAAAAAAAAGCAAAAAAATCTGAACARATTTCAAAAAGAATCGAAATTCCAGCTCCTAGGAGCCCTTCCTTCTAGGAGCCGAGTTACAGCCTCTCGAAGTTTTGGAGAGACGCAGACAGTTAGAGTGTCTCGTCGTCTGCGCCTCTAGCCTCCGAAACTTCAAATGGCTGTTTCTCGGCTTCTATAACAGCTAGAAAAAAGAAAATTGAATGAAAATAATGAAAAATGTTTTGAAACAAAAAGAAACTTAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30486</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>15542</contig_pos>
        <strand></strand>
        <context>AGCCCTTCCt[T/A]ctaggagccg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGAACAAATTTCAAAAAGAATCGAAATTCCAGCTCCTAGGAGCCCTTCCT</left_flank>
        <right_flank>CTAGGAGCCGAGTTACAGCCTCTCGAAGTTTTGGAGAGACGCAGACAGTT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTATGGGGATATGTAGAGCACAAAAAAGGGCAGTTATGAGACAGAATAACACATTTTTATTGCGTTTTTTATTTCGTTTTTTATTTCTAAAATTGGAAAAAGAGGATATGCGTTTTGGGAACCTGAAGATGTATTGTTTTTACCGTTAAAACCAATGGAAGGCTACCCAAACCATTAAGTTTGAACCCATATAATTCAATTCTTGTGAAAGATATCAAAAAGTTGTTAACTGATAAAATATTGCTGATATTATGATAAACAATTTGTTAGTTAACCACTCTTTGATATCTTCTACAGAAAGTGAGATATATGGACTCAAAGTTAACAATCTGAGTGGCGTTATAGCAGAGTTTATACGGTAGATTTATTAATTTTTTTTTTCAAGTTTTTGATTTTAAAATCTACAATTTGTCAGTTTTGGATTCTCAAAAAAAAAGCAAAAAAATCTGAACAAATTTCAAAAAGAATCGAAATTCCAGCTCCTAGGAGCCCTTCCTTCTAGGAGCCGAGTTACAGCCTCTCGAAGTTTTGGAGAGACGCAGACAGTTAGAGTGTCTCGTCGTCTGCGCCTCTAGCCTCCGAAACTTCAAATGGCTGTTTCTCGGCTTCTATAACAGCTAGAAAAAAGAAAATTGAATGAAAATAATGAAAAATGTTTTGAAACAAAAAGAAACTTAGCTCATTTTTCTAGGATATGACCTTTTTTGGAATTGGAAAATGTTTTTAGAAATTTTTAGGTCCTTCACATTTCCTGGACCTGCCCAAAAAAGGTGGATTAGCTTCAAGAAAAAAGAAAGGTGTGAAACAATAGAAACAAAGCTTAAAAAGTCGAAAAAAAATGTGAAAAAAAATATTTTCTCCACTAGGAGCCAAAAATCTCATAACGCACATTTCCTCTGTCATTTTCCACTAGAAATGGGACGGGATTTCCTCTCCGGATTTCCGATTTTTATGAGTGTGTGGGAAGGTCATAAATTTTGTTGTTTTGGTTTTTAGCG</canonical>
            <polymorphic>GTGTATGGGGATATGTAGAGCACAAAAAAGGGCAGTTATGAGACAGAATAACACATTTTTATTGCGTTTTTTATTTCGTTTTTTATTTCTAAAATTGGAAAAAGAGGATATGCGTTTTGGGAACCTGAAGATGTATTGTTTTTACCGTTAAAACCAATGGAAGGCTACCCAAACCATTAAGTTTGAACCCATATAATTCAATTCTTGTGAAAGATATCAAAAAGTTGTTAACTGATAAAATATTGCTGATATTATGATAAACAATTTGTTAGTTAACCACTCTTTGATATCTTCTACAGAAAGTGAGATATATGGACTCAAAGTTAACAATCTGAGTGGCGTTATAGCAGAGTTTATACGGTAGATTTATTAATTTTTTTTTTCAAGTTTTTGATTTTAAAATCTACAATTTGTCAGTTTTGGATTCTCAAAAAAAAAGCAAAAAAATCTGAACAAATTTCAAAAAGAATCGAAATTCCAGCTCCTAGGAGCCCTTCCTWCTAGGAGCCGAGTTACAGCCTCTCGAAGTTTTGGAGAGACGCAGACAGTTAGAGTGTCTCGTCGTCTGCGCCTCTAGCCTCCGAAACTTCAAATGGCTGTTTCTCGGCTTCTATAACAGCTAGAAAAAAGAAAATTGAATGAAAATAATGAAAAATGTTTTGAAACAAAAAGAAACTTAGCTCATTTTTCTAGGATATGACCTTTTTTGGAATTGGAAAATGTTTTTAGAAATTTTTAGGTCCTTCACATTTCCTGGACCTGCCCAAAAAAGGTGGATTAGCTTCAAGAAAAAAGAAAGGTGTGAAACAATAGAAACAAAGCTTAAAAAGTCGAAAAAAAATGTGAAAAAAAATATTTTCTCCACTAGGAGCCAAAAATCTCATAACGCACATTTCCTCTGTCATTTTCCACTAGAAATGGGACGGGATTTCCTCTCCGGATTTCCGATTTTTATGAGTGTGTGGGAAGGTCATAAATTTTGTTGTTTTGGTTTTTAGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTGTCAGTTTTGGATTCTC</pcr_primer_p1>
		<pcr_primer_p2>AGCTAAGTTTCTTTTTGTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>275</pcr_amplicon_size>
		<canonical_amplicon>AATTTGTCAGTTTTGGATTCTCAAAAAAAAAGCAAAAAAATCTGAACAAATTTCAAAAAGAATCGAAATTCCAGCTCCTAGGAGCCCTTCCTTCTAGGAGCCGAGTTACAGCCTCTCGAAGTTTTGGAGAGACGCAGACAGTTAGAGTGTCTCGTCGTCTGCGCCTCTAGCCTCCGAAACTTCAAATGGCTGTTTCTCGGCTTCTATAACAGCTAGAAAAAAGAAAATTGAATGAAAATAATGAAAAATGTTTTGAAACAAAAAGAAACTTAGCT</canonical_amplicon>
		<polymorphic_amplicon>AATTTGTCAGTTTTGGATTCTCAAAAAAAAAGCAAAAAAATCTGAACAAATTTCAAAAAGAATCGAAATTCCAGCTCCTAGGAGCCCTTCCTWCTAGGAGCCGAGTTACAGCCTCTCGAAGTTTTGGAGAGACGCAGACAGTTAGAGTGTCTCGTCGTCTGCGCCTCTAGCCTCCGAAACTTCAAATGGCTGTTTCTCGGCTTCTATAACAGCTAGAAAAAAGAAAATTGAATGAAAATAATGAAAAATGTTTTGAAACAAAAAGAAACTTAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30487</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>15642</contig_pos>
        <strand></strand>
        <context>caaatggctg[T/C]wtctcggctt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAGAGTGTCTCGTCGTCTGCGCCTCTAGCCTCCGAAACTTCAAATGGCTG</left_flank>
        <right_flank>TTCTCGGCTTCTATAACAGCTAGAAAAAAGAAAATTGAATGAAAATAATG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGAGGATATGCGTTTTGGGAACCTGAAGATGTATTGTTTTTACCGTTAAAACCAATGGAAGGCTACCCAAACCATTAAGTTTGAACCCATATAATTCAATTCTTGTGAAAGATATCAAAAAGTTGTTAACTGATAAAATATTGCTGATATTATGATAAACAATTTGTTAGTTAACCACTCTTTGATATCTTCTACAGAAAGTGAGATATATGGACTCAAAGTTAACAATCTGAGTGGCGTTATAGCAGAGTTTATACGGTAGATTTATTAATTTTTTTTTTCAAGTTTTTGATTTTAAAATCTACAATTTGTCAGTTTTGGATTCTCAAAAAAAAAGCAAAAAAATCTGAACAAATTTCAAAAAGAATCGAAATTCCAGCTCCTAGGAGCCCTTCCTTCTAGGAGCCGAGTTACAGCCTCTCGAAGTTTTGGAGAGACGCAGACAGTTAGAGTGTCTCGTCGTCTGCGCCTCTAGCCTCCGAAACTTCAAATGGCTGTTTCTCGGCTTCTATAACAGCTAGAAAAAAGAAAATTGAATGAAAATAATGAAAAATGTTTTGAAACAAAAAGAAACTTAGCTCATTTTTCTAGGATATGACCTTTTTTGGAATTGGAAAATGTTTTTAGAAATTTTTAGGTCCTTCACATTTCCTGGACCTGCCCAAAAAAGGTGGATTAGCTTCAAGAAAAAAGAAAGGTGTGAAACAATAGAAACAAAGCTTAAAAAGTCGAAAAAAAATGTGAAAAAAAATATTTTCTCCACTAGGAGCCAAAAATCTCATAACGCACATTTCCTCTGTCATTTTCCACTAGAAATGGGACGGGATTTCCTCTCCGGATTTCCGATTTTTATGAGTGTGTGGGAAGGTCATAAATTTTGTTGTTTTGGTTTTTAGCGAAGAAAAAACAAAGTAATTATTTCCATAAAACTACCGTATACCTGAGCATCGAGAAGAAGTAATTTGCTCCGAAATCGGGTAATCGTTCGGCGCGTGATC</canonical>
            <polymorphic>AAAGAGGATATGCGTTTTGGGAACCTGAAGATGTATTGTTTTTACCGTTAAAACCAATGGAAGGCTACCCAAACCATTAAGTTTGAACCCATATAATTCAATTCTTGTGAAAGATATCAAAAAGTTGTTAACTGATAAAATATTGCTGATATTATGATAAACAATTTGTTAGTTAACCACTCTTTGATATCTTCTACAGAAAGTGAGATATATGGACTCAAAGTTAACAATCTGAGTGGCGTTATAGCAGAGTTTATACGGTAGATTTATTAATTTTTTTTTTCAAGTTTTTGATTTTAAAATCTACAATTTGTCAGTTTTGGATTCTCAAAAAAAAAGCAAAAAAATCTGAACAAATTTCAAAAAGAATCGAAATTCCAGCTCCTAGGAGCCCTTCCTTCTAGGAGCCGAGTTACAGCCTCTCGAAGTTTTGGAGAGACGCAGACAGTTAGAGTGTCTCGTCGTCTGCGCCTCTAGCCTCCGAAACTTCAAATGGCTGYTTCTCGGCTTCTATAACAGCTAGAAAAAAGAAAATTGAATGAAAATAATGAAAAATGTTTTGAAACAAAAAGAAACTTAGCTCATTTTTCTAGGATATGACCTTTTTTGGAATTGGAAAATGTTTTTAGAAATTTTTAGGTCCTTCACATTTCCTGGACCTGCCCAAAAAAGGTGGATTAGCTTCAAGAAAAAAGAAAGGTGTGAAACAATAGAAACAAAGCTTAAAAAGTCGAAAAAAAATGTGAAAAAAAATATTTTCTCCACTAGGAGCCAAAAATCTCATAACGCACATTTCCTCTGTCATTTTCCACTAGAAATGGGACGGGATTTCCTCTCCGGATTTCCGATTTTTATGAGTGTGTGGGAAGGTCATAAATTTTGTTGTTTTGGTTTTTAGCGAAGAAAAAACAAAGTAATTATTTCCATAAAACTACCGTATACCTGAGCATCGAGAAGAAGTAATTTGCTCCGAAATCGGGTAATCGTTCGGCGCGTGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAATCGAAATTCCAGCTC</pcr_primer_p1>
		<pcr_primer_p2>TCATATCCTAGAAAAATGAGCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>AAGAATCGAAATTCCAGCTCCTAGGAGCCCTTCCTTCTAGGAGCCGAGTTACAGCCTCTCGAAGTTTTGGAGAGACGCAGACAGTTAGAGTGTCTCGTCGTCTGCGCCTCTAGCCTCCGAAACTTCAAATGGCTGTTTCTCGGCTTCTATAACAGCTAGAAAAAAGAAAATTGAATGAAAATAATGAAAAATGTTTTGAAACAAAAAGAAACTTAGCTCATTTTTCTAGGATATGA</canonical_amplicon>
		<polymorphic_amplicon>AAGAATCGAAATTCCAGCTCCTAGGAGCCCTTCCTTCTAGGAGCCGAGTTACAGCCTCTCGAAGTTTTGGAGAGACGCAGACAGTTAGAGTGTCTCGTCGTCTGCGCCTCTAGCCTCCGAAACTTCAAATGGCTGYTTCTCGGCTTCTATAACAGCTAGAAAAAAGAAAATTGAATGAAAATAATGAAAAATGTTTTGAAACAAAAAGAAACTTAGCTCATTTTTCTAGGATATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30488</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>15643</contig_pos>
        <strand></strand>
        <context>aaatggctgy[T/A]tctcggcttc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGAGTGTCTCGTCGTCTGCGCCTCTAGCCTCCGAAACTTCAAATGGCTGT</left_flank>
        <right_flank>TCTCGGCTTCTATAACAGCTAGAAAAAAGAAAATTGAATGAAAATAATGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAGGATATGCGTTTTGGGAACCTGAAGATGTATTGTTTTTACCGTTAAAACCAATGGAAGGCTACCCAAACCATTAAGTTTGAACCCATATAATTCAATTCTTGTGAAAGATATCAAAAAGTTGTTAACTGATAAAATATTGCTGATATTATGATAAACAATTTGTTAGTTAACCACTCTTTGATATCTTCTACAGAAAGTGAGATATATGGACTCAAAGTTAACAATCTGAGTGGCGTTATAGCAGAGTTTATACGGTAGATTTATTAATTTTTTTTTTCAAGTTTTTGATTTTAAAATCTACAATTTGTCAGTTTTGGATTCTCAAAAAAAAAGCAAAAAAATCTGAACAAATTTCAAAAAGAATCGAAATTCCAGCTCCTAGGAGCCCTTCCTTCTAGGAGCCGAGTTACAGCCTCTCGAAGTTTTGGAGAGACGCAGACAGTTAGAGTGTCTCGTCGTCTGCGCCTCTAGCCTCCGAAACTTCAAATGGCTGTTTCTCGGCTTCTATAACAGCTAGAAAAAAGAAAATTGAATGAAAATAATGAAAAATGTTTTGAAACAAAAAGAAACTTAGCTCATTTTTCTAGGATATGACCTTTTTTGGAATTGGAAAATGTTTTTAGAAATTTTTAGGTCCTTCACATTTCCTGGACCTGCCCAAAAAAGGTGGATTAGCTTCAAGAAAAAAGAAAGGTGTGAAACAATAGAAACAAAGCTTAAAAAGTCGAAAAAAAATGTGAAAAAAAATATTTTCTCCACTAGGAGCCAAAAATCTCATAACGCACATTTCCTCTGTCATTTTCCACTAGAAATGGGACGGGATTTCCTCTCCGGATTTCCGATTTTTATGAGTGTGTGGGAAGGTCATAAATTTTGTTGTTTTGGTTTTTAGCGAAGAAAAAACAAAGTAATTATTTCCATAAAACTACCGTATACCTGAGCATCGAGAAGAAGTAATTTGCTCCGAAATCGGGTAATCGTTCGGCGCGTGATCG</canonical>
            <polymorphic>AAGAGGATATGCGTTTTGGGAACCTGAAGATGTATTGTTTTTACCGTTAAAACCAATGGAAGGCTACCCAAACCATTAAGTTTGAACCCATATAATTCAATTCTTGTGAAAGATATCAAAAAGTTGTTAACTGATAAAATATTGCTGATATTATGATAAACAATTTGTTAGTTAACCACTCTTTGATATCTTCTACAGAAAGTGAGATATATGGACTCAAAGTTAACAATCTGAGTGGCGTTATAGCAGAGTTTATACGGTAGATTTATTAATTTTTTTTTTCAAGTTTTTGATTTTAAAATCTACAATTTGTCAGTTTTGGATTCTCAAAAAAAAAGCAAAAAAATCTGAACAAATTTCAAAAAGAATCGAAATTCCAGCTCCTAGGAGCCCTTCCTTCTAGGAGCCGAGTTACAGCCTCTCGAAGTTTTGGAGAGACGCAGACAGTTAGAGTGTCTCGTCGTCTGCGCCTCTAGCCTCCGAAACTTCAAATGGCTGTWTCTCGGCTTCTATAACAGCTAGAAAAAAGAAAATTGAATGAAAATAATGAAAAATGTTTTGAAACAAAAAGAAACTTAGCTCATTTTTCTAGGATATGACCTTTTTTGGAATTGGAAAATGTTTTTAGAAATTTTTAGGTCCTTCACATTTCCTGGACCTGCCCAAAAAAGGTGGATTAGCTTCAAGAAAAAAGAAAGGTGTGAAACAATAGAAACAAAGCTTAAAAAGTCGAAAAAAAATGTGAAAAAAAATATTTTCTCCACTAGGAGCCAAAAATCTCATAACGCACATTTCCTCTGTCATTTTCCACTAGAAATGGGACGGGATTTCCTCTCCGGATTTCCGATTTTTATGAGTGTGTGGGAAGGTCATAAATTTTGTTGTTTTGGTTTTTAGCGAAGAAAAAACAAAGTAATTATTTCCATAAAACTACCGTATACCTGAGCATCGAGAAGAAGTAATTTGCTCCGAAATCGGGTAATCGTTCGGCGCGTGATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAATCGAAATTCCAGCTC</pcr_primer_p1>
		<pcr_primer_p2>TCATATCCTAGAAAAATGAGCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>AAGAATCGAAATTCCAGCTCCTAGGAGCCCTTCCTTCTAGGAGCCGAGTTACAGCCTCTCGAAGTTTTGGAGAGACGCAGACAGTTAGAGTGTCTCGTCGTCTGCGCCTCTAGCCTCCGAAACTTCAAATGGCTGTTTCTCGGCTTCTATAACAGCTAGAAAAAAGAAAATTGAATGAAAATAATGAAAAATGTTTTGAAACAAAAAGAAACTTAGCTCATTTTTCTAGGATATGA</canonical_amplicon>
		<polymorphic_amplicon>AAGAATCGAAATTCCAGCTCCTAGGAGCCCTTCCTTCTAGGAGCCGAGTTACAGCCTCTCGAAGTTTTGGAGAGACGCAGACAGTTAGAGTGTCTCGTCGTCTGCGCCTCTAGCCTCCGAAACTTCAAATGGCTGTWTCTCGGCTTCTATAACAGCTAGAAAAAAGAAAATTGAATGAAAATAATGAAAAATGTTTTGAAACAAAAAGAAACTTAGCTCATTTTTCTAGGATATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30489</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>15671</contig_pos>
        <strand></strand>
        <context>gctagaaaaa[A/T]gaaaattgaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCCGAAACTTCAAATGGCTGTTTCTCGGCTTCTATAACAGCTAGAAAAA</left_flank>
        <right_flank>GAAAATTGAATGAAAATAATGAAAAATGTTTTGAAACAAAAAGAAACTTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGTATTGTTTTTACCGTTAAAACCAATGGAAGGCTACCCAAACCATTAAGTTTGAACCCATATAATTCAATTCTTGTGAAAGATATCAAAAAGTTGTTAACTGATAAAATATTGCTGATATTATGATAAACAATTTGTTAGTTAACCACTCTTTGATATCTTCTACAGAAAGTGAGATATATGGACTCAAAGTTAACAATCTGAGTGGCGTTATAGCAGAGTTTATACGGTAGATTTATTAATTTTTTTTTTCAAGTTTTTGATTTTAAAATCTACAATTTGTCAGTTTTGGATTCTCAAAAAAAAAGCAAAAAAATCTGAACAAATTTCAAAAAGAATCGAAATTCCAGCTCCTAGGAGCCCTTCCTTCTAGGAGCCGAGTTACAGCCTCTCGAAGTTTTGGAGAGACGCAGACAGTTAGAGTGTCTCGTCGTCTGCGCCTCTAGCCTCCGAAACTTCAAATGGCTGTTTCTCGGCTTCTATAACAGCTAGAAAAAAGAAAATTGAATGAAAATAATGAAAAATGTTTTGAAACAAAAAGAAACTTAGCTCATTTTTCTAGGATATGACCTTTTTTGGAATTGGAAAATGTTTTTAGAAATTTTTAGGTCCTTCACATTTCCTGGACCTGCCCAAAAAAGGTGGATTAGCTTCAAGAAAAAAGAAAGGTGTGAAACAATAGAAACAAAGCTTAAAAAGTCGAAAAAAAATGTGAAAAAAAATATTTTCTCCACTAGGAGCCAAAAATCTCATAACGCACATTTCCTCTGTCATTTTCCACTAGAAATGGGACGGGATTTCCTCTCCGGATTTCCGATTTTTATGAGTGTGTGGGAAGGTCATAAATTTTGTTGTTTTGGTTTTTAGCGAAGAAAAAACAAAGTAATTATTTCCATAAAACTACCGTATACCTGAGCATCGAGAAGAAGTAATTTGCTCCGAAATCGGGTAATCGTTCGGCGCGTGATCGAAAAACTCCGGTCGTCGGTTCGGCGGTG</canonical>
            <polymorphic>GATGTATTGTTTTTACCGTTAAAACCAATGGAAGGCTACCCAAACCATTAAGTTTGAACCCATATAATTCAATTCTTGTGAAAGATATCAAAAAGTTGTTAACTGATAAAATATTGCTGATATTATGATAAACAATTTGTTAGTTAACCACTCTTTGATATCTTCTACAGAAAGTGAGATATATGGACTCAAAGTTAACAATCTGAGTGGCGTTATAGCAGAGTTTATACGGTAGATTTATTAATTTTTTTTTTCAAGTTTTTGATTTTAAAATCTACAATTTGTCAGTTTTGGATTCTCAAAAAAAAAGCAAAAAAATCTGAACAAATTTCAAAAAGAATCGAAATTCCAGCTCCTAGGAGCCCTTCCTTCTAGGAGCCGAGTTACAGCCTCTCGAAGTTTTGGAGAGACGCAGACAGTTAGAGTGTCTCGTCGTCTGCGCCTCTAGCCTCCGAAACTTCAAATGGCTGTTTCTCGGCTTCTATAACAGCTAGAAAAAWGAAAATTGAATGAAAATAATGAAAAATGTTTTGAAACAAAAAGAAACTTAGCTCATTTTTCTAGGATATGACCTTTTTTGGAATTGGAAAATGTTTTTAGAAATTTTTAGGTCCTTCACATTTCCTGGACCTGCCCAAAAAAGGTGGATTAGCTTCAAGAAAAAAGAAAGGTGTGAAACAATAGAAACAAAGCTTAAAAAGTCGAAAAAAAATGTGAAAAAAAATATTTTCTCCACTAGGAGCCAAAAATCTCATAACGCACATTTCCTCTGTCATTTTCCACTAGAAATGGGACGGGATTTCCTCTCCGGATTTCCGATTTTTATGAGTGTGTGGGAAGGTCATAAATTTTGTTGTTTTGGTTTTTAGCGAAGAAAAAACAAAGTAATTATTTCCATAAAACTACCGTATACCTGAGCATCGAGAAGAAGTAATTTGCTCCGAAATCGGGTAATCGTTCGGCGCGTGATCGAAAAACTCCGGTCGTCGGTTCGGCGGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAATCGAAATTCCAGCTC</pcr_primer_p1>
		<pcr_primer_p2>TCATATCCTAGAAAAATGAGCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>AAGAATCGAAATTCCAGCTCCTAGGAGCCCTTCCTTCTAGGAGCCGAGTTACAGCCTCTCGAAGTTTTGGAGAGACGCAGACAGTTAGAGTGTCTCGTCGTCTGCGCCTCTAGCCTCCGAAACTTCAAATGGCTGTTTCTCGGCTTCTATAACAGCTAGAAAAAAGAAAATTGAATGAAAATAATGAAAAATGTTTTGAAACAAAAAGAAACTTAGCTCATTTTTCTAGGATATGA</canonical_amplicon>
		<polymorphic_amplicon>AAGAATCGAAATTCCAGCTCCTAGGAGCCCTTCCTTCTAGGAGCCGAGTTACAGCCTCTCGAAGTTTTGGAGAGACGCAGACAGTTAGAGTGTCTCGTCGTCTGCGCCTCTAGCCTCCGAAACTTCAAATGGCTGTTTCTCGGCTTCTATAACAGCTAGAAAAAWGAAAATTGAATGAAAATAATGAAAAATGTTTTGAAACAAAAAGAAACTTAGCTCATTTTTCTAGGATATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30490</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>15895</contig_pos>
        <strand>+</strand>
        <context>GTGAAAAAAA[A/G]TATTTTCTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAACAATAGAAACAAAGCTTAAAAAGTCGAAAAAAAATGTGAAAAAAA</left_flank>
        <right_flank>TATTTTCTCCACTAGGAGCCAAAAATCTCATAACGCACATTTCCTCTGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATACGGTAGATTTATTAATTTTTTTTTTCAAGTTTTTGATTTTAAAATCTACAATTTGTCAGTTTTGGATTCTCAAAAAAAAAGCAAAAAAATCTGAACAAATTTCAAAAAGAATCGAAATTCCAGCTCCTAGGAGCCCTTCCTTCTAGGAGCCGAGTTACAGCCTCTCGAAGTTTTGGAGAGACGCAGACAGTTAGAGTGTCTCGTCGTCTGCGCCTCTAGCCTCCGAAACTTCAAATGGCTGTTTCTCGGCTTCTATAACAGCTAGAAAAAAGAAAATTGAATGAAAATAATGAAAAATGTTTTGAAACAAAAAGAAACTTAGCTCATTTTTCTAGGATATGACCTTTTTTGGAATTGGAAAATGTTTTTAGAAATTTTTAGGTCCTTCACATTTCCTGGACCTGCCCAAAAAAGGTGGATTAGCTTCAAGAAAAAAGAAAGGTGTGAAACAATAGAAACAAAGCTTAAAAAGTCGAAAAAAAATGTGAAAAAAAATATTTTCTCCACTAGGAGCCAAAAATCTCATAACGCACATTTCCTCTGTCATTTTCCACTAGAAATGGGACGGGATTTCCTCTCCGGATTTCCGATTTTTATGAGTGTGTGGGAAGGTCATAAATTTTGTTGTTTTGGTTTTTAGCGAAGAAAAAACAAAGTAATTATTTCCATAAAACTACCGTATACCTGAGCATCGAGAAGAAGTAATTTGCTCCGAAATCGGGTAATCGTTCGGCGCGTGATCGAAAAACTCCGGTCGTCGGTTCGGCGGTGGGCGCGGTTCAGAGACTTCTGGAAGTAATTAGGGGTAATTAGGGTAATTAAGGTTGAAGGAGGGGGAGATTTTCAGGGCTTTTGGAGAGTATGCATTCTCACGGGTTTTCAAGTTTCCGATCAATTGAACATTTTTGAGGGATTAAAACTGACATAGATTGAAAATTTCGTGGTTTTTTGGATTTTTCAAGCAGAAAACCCTTATTTTTCCATCTATTTTTAGC</canonical>
            <polymorphic>TTATACGGTAGATTTATTAATTTTTTTTTTCAAGTTTTTGATTTTAAAATCTACAATTTGTCAGTTTTGGATTCTCAAAAAAAAAGCAAAAAAATCTGAACAAATTTCAAAAAGAATCGAAATTCCAGCTCCTAGGAGCCCTTCCTTCTAGGAGCCGAGTTACAGCCTCTCGAAGTTTTGGAGAGACGCAGACAGTTAGAGTGTCTCGTCGTCTGCGCCTCTAGCCTCCGAAACTTCAAATGGCTGTTTCTCGGCTTCTATAACAGCTAGAAAAAAGAAAATTGAATGAAAATAATGAAAAATGTTTTGAAACAAAAAGAAACTTAGCTCATTTTTCTAGGATATGACCTTTTTTGGAATTGGAAAATGTTTTTAGAAATTTTTAGGTCCTTCACATTTCCTGGACCTGCCCAAAAAAGGTGGATTAGCTTCAAGAAAAAAGAAAGGTGTGAAACAATAGAAACAAAGCTTAAAAAGTCGAAAAAAAATGTGAAAAAAARTATTTTCTCCACTAGGAGCCAAAAATCTCATAACGCACATTTCCTCTGTCATTTTCCACTAGAAATGGGACGGGATTTCCTCTCCGGATTTCCGATTTTTATGAGTGTGTGGGAAGGTCATAAATTTTGTTGTTTTGGTTTTTAGCGAAGAAAAAACAAAGTAATTATTTCCATAAAACTACCGTATACCTGAGCATCGAGAAGAAGTAATTTGCTCCGAAATCGGGTAATCGTTCGGCGCGTGATCGAAAAACTCCGGTCGTCGGTTCGGCGGTGGGCGCGGTTCAGAGACTTCTGGAAGTAATTAGGGGTAATTAGGGTAATTAAGGTTGAAGGAGGGGGAGATTTTCAGGGCTTTTGGAGAGTATGCATTCTCACGGGTTTTCAAGTTTCCGATCAATTGAACATTTTTGAGGGATTAAAACTGACATAGATTGAAAATTTCGTGGTTTTTTGGATTTTTCAAGCAGAAAACCCTTATTTTTCCATCTATTTTTAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGTGAAACAATAGAAACAAAG</pcr_primer_p1>
		<pcr_primer_p2>TCAGGTATACGGTAGTTTTATGG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGTGTGAAACAATAGAAACAAAGCTTAAAAAGTCGAAAAAAAATGTGAAAAAAAATATTTTCTCCACTAGGAGCCAAAAATCTCATAACGCACATTTCCTCTGTCATTTTCCACTAGAAATGGGACGGGATTTCCTCTCCGGATTTCCGATTTTTATGAGTGTGTGGGAAGGTCATAAATTTTGTTGTTTTGGTTTTTAGCGAAGAAAAAACAAAGTAATTATTTCCATAAAACTACCGTATACCTGA</canonical_amplicon>
		<polymorphic_amplicon>GGTGTGAAACAATAGAAACAAAGCTTAAAAAGTCGAAAAAAAATGTGAAAAAAARTATTTTCTCCACTAGGAGCCAAAAATCTCATAACGCACATTTCCTCTGTCATTTTCCACTAGAAATGGGACGGGATTTCCTCTCCGGATTTCCGATTTTTATGAGTGTGTGGGAAGGTCATAAATTTTGTTGTTTTGGTTTTTAGCGAAGAAAAAACAAAGTAATTATTTCCATAAAACTACCGTATACCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30491</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>39743</contig_pos>
        <strand></strand>
        <context>cggtttttga[T/C]ttttaacttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAGTTTCAAGGCTTTATAGCTAGGACCCCAAAGCTCCGACGGTTTTTGA</left_flank>
        <right_flank>TTTTAACTTTGTTCATAGACAAGATACAGTATTCCAAATAGTATGATTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGATCGGATTCCTCGTCTTTCGGCTTGTGCAGAAGTTTGGTCTGTTTATCGAACTCATCGTAGTCGGCTGGATGTAAAAAGTCGCGAAGAGCACGGCCAGTGAGGTCAGTCTGAAAGTTCAGTAAGTGTTGAAACTTCAAAAACCTTCTAGGCTTACCTGTGTTAATCCCAAATACAACGCGACACTCTCTGTGACATACAAAATCGACGAATCGCTATCCACAATCAGGACGAATCCATCTAAACACTCTGCTATCGTCTCCTCATTCCACACTTCATTGTTGAACTCGTTGTCCAGGTCGTTTTCGAGAACTGGAAATCCTTGTTTTCGTGCTTGTATATATTCTTTTAGAATCAATATTTTTGAACCAACTAAATTAGATGGCATAAAACTAAACGAGTGCTACAAAATGATATTATTTGGAATGCTATATCTTGTCTATGAACAAAGTTTCAAGGCTTTATAGCTAGGACCCCAAAGCTCCGACGGTTTTTGATTTTTAACTTTGTTCATAGACAAGATACAGTATTCCAAATAGTATGATTTTGTAGATCTTGAATTTTTCTATCATGTTTATTTATTCAGTTCAAAAACTTTGATTCTAAAATAAACTATGCGGGCCCCAACTGTTAATCTTAATTTGAGAAAAAAATCTGATCTCTGATCATACCCCCCAACTAATTCCTTTCTAATTCAATTTGATGTATTTCCAATGTCACTTACCATTACCGGCTGTCTTTCGAAGACGGCAAATCGTGGCGGCGACGCGTAGAAGTGCTATTCGGTCGAGATGGGTTACTGTACCCTCTTCAACAATCGGTACCACTTGTTTGAGTTCATCGAAAATCTCTCCTTCCTTAAAACGACGATCTCGTGCCGCGTATCGAGATGTTTCTCGTCGGCGTTCCATGTTTCTGGAATTTTAATTAATTTTTTTTTCACTGGAATCGTTGGCTCTTTATGGCAAGCCCCTATTTTTTTTAAACATCTAATCCGA</canonical>
            <polymorphic>TTGGATCGGATTCCTCGTCTTTCGGCTTGTGCAGAAGTTTGGTCTGTTTATCGAACTCATCGTAGTCGGCTGGATGTAAAAAGTCGCGAAGAGCACGGCCAGTGAGGTCAGTCTGAAAGTTCAGTAAGTGTTGAAACTTCAAAAACCTTCTAGGCTTACCTGTGTTAATCCCAAATACAACGCGACACTCTCTGTGACATACAAAATCGACGAATCGCTATCCACAATCAGGACGAATCCATCTAAACACTCTGCTATCGTCTCCTCATTCCACACTTCATTGTTGAACTCGTTGTCCAGGTCGTTTTCGAGAACTGGAAATCCTTGTTTTCGTGCTTGTATATATTCTTTTAGAATCAATATTTTTGAACCAACTAAATTAGATGGCATAAAACTAAACGAGTGCTACAAAATGATATTATTTGGAATGCTATATCTTGTCTATGAACAAAGTTTCAAGGCTTTATAGCTAGGACCCCAAAGCTCCGACGGTTTTTGAYTTTTAACTTTGTTCATAGACAAGATACAGTATTCCAAATAGTATGATTTTGTAGATCTTGAATTTTTCTATCATGTTTATTTATTCAGTTCAAAAACTTTGATTCTAAAATAAACTATGCGGGCCCCAACTGTTAATCTTAATTTGAGAAAAAAATCTGATCTCTGATCATACCCCCCAACTAATTCCTTTCTAATTCAATTTGATGTATTTCCAATGTCACTTACCATTACCGGCTGTCTTTCGAAGACGGCAAATCGTGGCGGCGACGCGTAGAAGTGCTATTCGGTCGAGATGGGTTACTGTACCCTCTTCAACAATCGGTACCACTTGTTTGAGTTCATCGAAAATCTCTCCTTCCTTAAAACGACGATCTCGTGCCGCGTATCGAGATGTTTCTCGTCGGCGTTCCATGTTTCTGGAATTTTAATTAATTTTTTTTTCACTGGAATCGTTGGCTCTTTATGGCAAGCCCCTATTTTTTTTAAACATCTAATCCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTGTTTTCGTGCTTGTAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTCAAATTAAGATTAACAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>CCTTGTTTTCGTGCTTGTATATATTCTTTTAGAATCAATATTTTTGAACCAACTAAATTAGATGGCATAAAACTAAACGAGTGCTACAAAATGATATTATTTGGAATGCTATATCTTGTCTATGAACAAAGTTTCAAGGCTTTATAGCTAGGACCCCAAAGCTCCGACGGTTTTTGATTTTTAACTTTGTTCATAGACAAGATACAGTATTCCAAATAGTATGATTTTGTAGATCTTGAATTTTTCTATCATGTTTATTTATTCAGTTCAAAAACTTTGATTCTAAAATAAACTATGCGGGCCCCAACTGTTAATCTTAATTTGAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>CCTTGTTTTCGTGCTTGTATATATTCTTTTAGAATCAATATTTTTGAACCAACTAAATTAGATGGCATAAAACTAAACGAGTGCTACAAAATGATATTATTTGGAATGCTATATCTTGTCTATGAACAAAGTTTCAAGGCTTTATAGCTAGGACCCCAAAGCTCCGACGGTTTTTGAYTTTTAACTTTGTTCATAGACAAGATACAGTATTCCAAATAGTATGATTTTGTAGATCTTGAATTTTTCTATCATGTTTATTTATTCAGTTCAAAAACTTTGATTCTAAAATAAACTATGCGGGCCCCAACTGTTAATCTTAATTTGAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30492</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>67108</contig_pos>
        <strand>+</strand>
        <context>ATTTAATTTG[A/T]AAAACAAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCAAGAAATTTGAAGATTTTGGAAAAACTAGAATTTCAATTTAATTTG</left_flank>
        <right_flank>AAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACAAATCAAAACGGGTTAATGGGCTTTTTTTGAAGTAGAAGTTTCCGAGAGGTGAGGAAGAGAAAGATGGGGCCACATGAGGTGAGACGTTGAGTTGGAAATGAGGTGTGACAGAAGAGCTATTGGGTAGTGGAAAGCGTTTAAAGAAGAAGAAGAAGAACAGTGGAAAGGAGAATTTATGAGTTTCGACGAATGGCTGAGAGGGTCAGTGGTTTTTCTTGGAAGTTGGGTAGGAAAAAGTGGGGAAGTTTGACCGTTTCCCACTAGTTTCATTAAAAAATGGTAAAAATTGGCTTTGAAAGTATTTAATTTCCAGTGCTAAAAATGAGCGGAAACGCTGAAAAAAGCTGAAAATATTCAGAAGACTCATATTAAAGAGAACATCCAATTTCAGCCATTTTCAGCTTAAAAATTATAGATAAAAAAACTCTTTGTTTAGCATGAAAATTTTCAAGAAATTTGAAGATTTTGGAAAAACTAGAATTTCAATTTAATTTGAAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGAGAT</canonical>
            <polymorphic>CACAAATCAAAACGGGTTAATGGGCTTTTTTTGAAGTAGAAGTTTCCGAGAGGTGAGGAAGAGAAAGATGGGGCCACATGAGGTGAGACGTTGAGTTGGAAATGAGGTGTGACAGAAGAGCTATTGGGTAGTGGAAAGCGTTTAAAGAAGAAGAAGAAGAACAGTGGAAAGGAGAATTTATGAGTTTCGACGAATGGCTGAGAGGGTCAGTGGTTTTTCTTGGAAGTTGGGTAGGAAAAAGTGGGGAAGTTTGACCGTTTCCCACTAGTTTCATTAAAAAATGGTAAAAATTGGCTTTGAAAGTATTTAATTTCCAGTGCTAAAAATGAGCGGAAACGCTGAAAAAAGCTGAAAATATTCAGAAGACTCATATTAAAGAGAACATCCAATTTCAGCCATTTTCAGCTTAAAAATTATAGATAAAAAAACTCTTTGTTTAGCATGAAAATTTTCAAGAAATTTGAAGATTTTGGAAAAACTAGAATTTCAATTTAATTTGWAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTCTTTGTTTAGCATGAAA</pcr_primer_p1>
		<pcr_primer_p2>TATCATAGAAGCCATCCCTATAC</pcr_primer_p2>
		<pcr_amplicon_size>325</pcr_amplicon_size>
		<canonical_amplicon>AAAACTCTTTGTTTAGCATGAAAATTTTCAAGAAATTTGAAGATTTTGGAAAAACTAGAATTTCAATTTAATTTGAAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATA</canonical_amplicon>
		<polymorphic_amplicon>AAAACTCTTTGTTTAGCATGAAAATTTTCAAGAAATTTGAAGATTTTGGAAAAACTAGAATTTCAATTTAATTTGWAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30493</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>67251</contig_pos>
        <strand></strand>
        <context>tatcacaata[A/T]cagcaacatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATA</left_flank>
        <right_flank>CAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGAAGAAGAAGAAGAACAGTGGAAAGGAGAATTTATGAGTTTCGACGAATGGCTGAGAGGGTCAGTGGTTTTTCTTGGAAGTTGGGTAGGAAAAAGTGGGGAAGTTTGACCGTTTCCCACTAGTTTCATTAAAAAATGGTAAAAATTGGCTTTGAAAGTATTTAATTTCCAGTGCTAAAAATGAGCGGAAACGCTGAAAAAAGCTGAAAATATTCAGAAGACTCATATTAAAGAGAACATCCAATTTCAGCCATTTTCAGCTTAAAAATTATAGATAAAAAAACTCTTTGTTTAGCATGAAAATTTTCAAGAAATTTGAAGATTTTGGAAAAACTAGAATTTCAATTTAATTTGAAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCTGTCACGTTTTTCTAACCCATTTCTCATGACTCTCCCAAAAAAAGACAAAAAGAGGGTAAGACCCTCCGGTGGGGTCGATTTGGAAGATTAAGGGGGGACTCAAT</canonical>
            <polymorphic>AAAGAAGAAGAAGAAGAACAGTGGAAAGGAGAATTTATGAGTTTCGACGAATGGCTGAGAGGGTCAGTGGTTTTTCTTGGAAGTTGGGTAGGAAAAAGTGGGGAAGTTTGACCGTTTCCCACTAGTTTCATTAAAAAATGGTAAAAATTGGCTTTGAAAGTATTTAATTTCCAGTGCTAAAAATGAGCGGAAACGCTGAAAAAAGCTGAAAATATTCAGAAGACTCATATTAAAGAGAACATCCAATTTCAGCCATTTTCAGCTTAAAAATTATAGATAAAAAAACTCTTTGTTTAGCATGAAAATTTTCAAGAAATTTGAAGATTTTGGAAAAACTAGAATTTCAATTTAATTTGAAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAWCAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCTGTCACGTTTTTCTAACCCATTTCTCATGACTCTCCCAAAAAAAGACAAAAAGAGGGTAAGACCCTCCGGTGGGGTCGATTTGGAAGATTAAGGGGGGACTCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACAAAAGGCGCTAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTATCATAGAAGCCATCCCTATAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAG</canonical_amplicon>
		<polymorphic_amplicon>AAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAWCAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30494</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>67309</contig_pos>
        <strand></strand>
        <context>accgagataa[A/T]gaaactcaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAA</left_flank>
        <right_flank>GAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGGTCAGTGGTTTTTCTTGGAAGTTGGGTAGGAAAAAGTGGGGAAGTTTGACCGTTTCCCACTAGTTTCATTAAAAAATGGTAAAAATTGGCTTTGAAAGTATTTAATTTCCAGTGCTAAAAATGAGCGGAAACGCTGAAAAAAGCTGAAAATATTCAGAAGACTCATATTAAAGAGAACATCCAATTTCAGCCATTTTCAGCTTAAAAATTATAGATAAAAAAACTCTTTGTTTAGCATGAAAATTTTCAAGAAATTTGAAGATTTTGGAAAAACTAGAATTTCAATTTAATTTGAAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCTGTCACGTTTTTCTAACCCATTTCTCATGACTCTCCCAAAAAAAGACAAAAAGAGGGTAAGACCCTCCGGTGGGGTCGATTTGGAAGATTAAGGGGGGACTCAATTTGCACCCCCTCCAAAATTGAATGATCGTTGCTTACGTCGGAAGAGAAGCAGGATAAT</canonical>
            <polymorphic>GAGGGTCAGTGGTTTTTCTTGGAAGTTGGGTAGGAAAAAGTGGGGAAGTTTGACCGTTTCCCACTAGTTTCATTAAAAAATGGTAAAAATTGGCTTTGAAAGTATTTAATTTCCAGTGCTAAAAATGAGCGGAAACGCTGAAAAAAGCTGAAAATATTCAGAAGACTCATATTAAAGAGAACATCCAATTTCAGCCATTTTCAGCTTAAAAATTATAGATAAAAAAACTCTTTGTTTAGCATGAAAATTTTCAAGAAATTTGAAGATTTTGGAAAAACTAGAATTTCAATTTAATTTGAAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAWGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCTGTCACGTTTTTCTAACCCATTTCTCATGACTCTCCCAAAAAAAGACAAAAAGAGGGTAAGACCCTCCGGTGGGGTCGATTTGGAAGATTAAGGGGGGACTCAATTTGCACCCCCTCCAAAATTGAATGATCGTTGCTTACGTCGGAAGAGAAGCAGGATAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAAAAGGCGCTAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>CATAGTTGAAAACTGGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>451</pcr_amplicon_size>
		<canonical_amplicon>AACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATG</canonical_amplicon>
		<polymorphic_amplicon>AACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAWGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30495</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>67369</contig_pos>
        <strand>+</strand>
        <context>AGKGTAACTC[A/T]agctcaatta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTC</left_flank>
        <right_flank>AGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCACTAGTTTCATTAAAAAATGGTAAAAATTGGCTTTGAAAGTATTTAATTTCCAGTGCTAAAAATGAGCGGAAACGCTGAAAAAAGCTGAAAATATTCAGAAGACTCATATTAAAGAGAACATCCAATTTCAGCCATTTTCAGCTTAAAAATTATAGATAAAAAAACTCTTTGTTTAGCATGAAAATTTTCAAGAAATTTGAAGATTTTGGAAAAACTAGAATTTCAATTTAATTTGAAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCTGTCACGTTTTTCTAACCCATTTCTCATGACTCTCCCAAAAAAAGACAAAAAGAGGGTAAGACCCTCCGGTGGGGTCGATTTGGAAGATTAAGGGGGGACTCAATTTGCACCCCCTCCAAAATTGAATGATCGTTGCTTACGTCGGAAGAGAAGCAGGATAATTTAAATATCCCAAATTTTTGTGGTGAGGTTTGGTCCCCTTCCGGCTTTGCTCGAGTCAAA</canonical>
            <polymorphic>CCACTAGTTTCATTAAAAAATGGTAAAAATTGGCTTTGAAAGTATTTAATTTCCAGTGCTAAAAATGAGCGGAAACGCTGAAAAAAGCTGAAAATATTCAGAAGACTCATATTAAAGAGAACATCCAATTTCAGCCATTTTCAGCTTAAAAATTATAGATAAAAAAACTCTTTGTTTAGCATGAAAATTTTCAAGAAATTTGAAGATTTTGGAAAAACTAGAATTTCAATTTAATTTGAAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCWAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCTGTCACGTTTTTCTAACCCATTTCTCATGACTCTCCCAAAAAAAGACAAAAAGAGGGTAAGACCCTCCGGTGGGGTCGATTTGGAAGATTAAGGGGGGACTCAATTTGCACCCCCTCCAAAATTGAATGATCGTTGCTTACGTCGGAAGAGAAGCAGGATAATTTAAATATCCCAAATTTTTGTGGTGAGGTTTGGTCCCCTTCCGGCTTTGCTCGAGTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>497 493 10</canonical_bands>
                <polymorphic_bands>990 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAAAAGGCGCTAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>CATAGTTGAAAACTGGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>451</pcr_amplicon_size>
		<canonical_amplicon>AACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATG</canonical_amplicon>
		<polymorphic_amplicon>AACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCWAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30496</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>67462</contig_pos>
        <strand></strand>
        <context>attagttgac[T/C]aactttttat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGAC</left_flank>
        <right_flank>AACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCAC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATTCAGAAGACTCATATTAAAGAGAACATCCAATTTCAGCCATTTTCAGCTTAAAAATTATAGATAAAAAAACTCTTTGTTTAGCATGAAAATTTTCAAGAAATTTGAAGATTTTGGAAAAACTAGAATTTCAATTTAATTTGAAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCTGTCACGTTTTTCTAACCCATTTCTCATGACTCTCCCAAAAAAAGACAAAAAGAGGGTAAGACCCTCCGGTGGGGTCGATTTGGAAGATTAAGGGGGGACTCAATTTGCACCCCCTCCAAAATTGAATGATCGTTGCTTACGTCGGAAGAGAAGCAGGATAATTTAAATATCCCAAATTTTTGTGGTGAGGTTTGGTCCCCTTCCGGCTTTGCTCGAGTCAAAAAAAAATGTTTTGAATTTATCACTTTTTGCTCACAACTAAAAAAAATCATCAATTTTTTGCCTCAATCTCCCTGGAGACTAAAAGTGGCAACA</canonical>
            <polymorphic>ATATTCAGAAGACTCATATTAAAGAGAACATCCAATTTCAGCCATTTTCAGCTTAAAAATTATAGATAAAAAAACTCTTTGTTTAGCATGAAAATTTTCAAGAAATTTGAAGATTTTGGAAAAACTAGAATTTCAATTTAATTTGAAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACYAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCTGTCACGTTTTTCTAACCCATTTCTCATGACTCTCCCAAAAAAAGACAAAAAGAGGGTAAGACCCTCCGGTGGGGTCGATTTGGAAGATTAAGGGGGGACTCAATTTGCACCCCCTCCAAAATTGAATGATCGTTGCTTACGTCGGAAGAGAAGCAGGATAATTTAAATATCCCAAATTTTTGTGGTGAGGTTTGGTCCCCTTCCGGCTTTGCTCGAGTCAAAAAAAAATGTTTTGAATTTATCACTTTTTGCTCACAACTAAAAAAAATCATCAATTTTTTGCCTCAATCTCCCTGGAGACTAAAAGTGGCAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAAAAGGCGCTAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>CATAGTTGAAAACTGGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>451</pcr_amplicon_size>
		<canonical_amplicon>AACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATG</canonical_amplicon>
		<polymorphic_amplicon>AACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACYAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30497</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>67484</contig_pos>
        <strand></strand>
        <context>tctataatag[G/A]aactgagata</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAG</left_flank>
        <right_flank>AACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGAACATCCAATTTCAGCCATTTTCAGCTTAAAAATTATAGATAAAAAAACTCTTTGTTTAGCATGAAAATTTTCAAGAAATTTGAAGATTTTGGAAAAACTAGAATTTCAATTTAATTTGAAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCTGTCACGTTTTTCTAACCCATTTCTCATGACTCTCCCAAAAAAAGACAAAAAGAGGGTAAGACCCTCCGGTGGGGTCGATTTGGAAGATTAAGGGGGGACTCAATTTGCACCCCCTCCAAAATTGAATGATCGTTGCTTACGTCGGAAGAGAAGCAGGATAATTTAAATATCCCAAATTTTTGTGGTGAGGTTTGGTCCCCTTCCGGCTTTGCTCGAGTCAAAAAAAAATGTTTTGAATTTATCACTTTTTGCTCACAACTAAAAAAAATCATCAATTTTTTGCCTCAATCTCCCTGGAGACTAAAAGTGGCAACATTTTGGAAAAATATGATTTTTC</canonical>
            <polymorphic>AGAGAACATCCAATTTCAGCCATTTTCAGCTTAAAAATTATAGATAAAAAAACTCTTTGTTTAGCATGAAAATTTTCAAGAAATTTGAAGATTTTGGAAAAACTAGAATTTCAATTTAATTTGAAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGRAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCTGTCACGTTTTTCTAACCCATTTCTCATGACTCTCCCAAAAAAAGACAAAAAGAGGGTAAGACCCTCCGGTGGGGTCGATTTGGAAGATTAAGGGGGGACTCAATTTGCACCCCCTCCAAAATTGAATGATCGTTGCTTACGTCGGAAGAGAAGCAGGATAATTTAAATATCCCAAATTTTTGTGGTGAGGTTTGGTCCCCTTCCGGCTTTGCTCGAGTCAAAAAAAAATGTTTTGAATTTATCACTTTTTGCTCACAACTAAAAAAAATCATCAATTTTTTGCCTCAATCTCCCTGGAGACTAAAAGTGGCAACATTTTGGAAAAATATGATTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAAAAGGCGCTAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>CATAGTTGAAAACTGGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>451</pcr_amplicon_size>
		<canonical_amplicon>AACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATG</canonical_amplicon>
		<polymorphic_amplicon>AACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGRAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30498</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>67521</contig_pos>
        <strand>+</strand>
        <context>acatataggg[A/G]atATGGGCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGG</left_flank>
        <right_flank>ATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATAGATAAAAAAACTCTTTGTTTAGCATGAAAATTTTCAAGAAATTTGAAGATTTTGGAAAAACTAGAATTTCAATTTAATTTGAAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCTGTCACGTTTTTCTAACCCATTTCTCATGACTCTCCCAAAAAAAGACAAAAAGAGGGTAAGACCCTCCGGTGGGGTCGATTTGGAAGATTAAGGGGGGACTCAATTTGCACCCCCTCCAAAATTGAATGATCGTTGCTTACGTCGGAAGAGAAGCAGGATAATTTAAATATCCCAAATTTTTGTGGTGAGGTTTGGTCCCCTTCCGGCTTTGCTCGAGTCAAAAAAAAATGTTTTGAATTTATCACTTTTTGCTCACAACTAAAAAAAATCATCAATTTTTTGCCTCAATCTCCCTGGAGACTAAAAGTGGCAACATTTTGGAAAAATATGATTTTTCGATAATTTATTGTTCCCTTTGGATTCATAAAAAAGTA</canonical>
            <polymorphic>TTATAGATAAAAAAACTCTTTGTTTAGCATGAAAATTTTCAAGAAATTTGAAGATTTTGGAAAAACTAGAATTTCAATTTAATTTGAAAAACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGRATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCTGTCACGTTTTTCTAACCCATTTCTCATGACTCTCCCAAAAAAAGACAAAAAGAGGGTAAGACCCTCCGGTGGGGTCGATTTGGAAGATTAAGGGGGGACTCAATTTGCACCCCCTCCAAAATTGAATGATCGTTGCTTACGTCGGAAGAGAAGCAGGATAATTTAAATATCCCAAATTTTTGTGGTGAGGTTTGGTCCCCTTCCGGCTTTGCTCGAGTCAAAAAAAAATGTTTTGAATTTATCACTTTTTGCTCACAACTAAAAAAAATCATCAATTTTTTGCCTCAATCTCCCTGGAGACTAAAAGTGGCAACATTTTGGAAAAATATGATTTTTCGATAATTTATTGTTCCCTTTGGATTCATAAAAAAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAAAAGGCGCTAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AGAGGAGATAGAACATGGAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>537</pcr_amplicon_size>
		<canonical_amplicon>AACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGTATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCT</canonical_amplicon>
		<polymorphic_amplicon>AACAAAAGGCGCTAAAAATCCAGAAAAAAAGATAAGCACCTAATTGAAGCCCATCCTATATGTGCACTTTGAGCTCAATTATCTCGGTTCCCATAAGAGATATCAGAAAATTTTCAACTGATAAAATTTTTATCACAATAACAGCAACATTTTATTAGTTGACAAATTTTTTGATATCTCTCATTGGAACCGAGATAAAGAAACTCAAAGTTTGAGCTCAAAGCGTATAGGGATGGCTTCTATGATAGAGGGTAACTCAAGCTCAATTATCTCGGCTCCTTTAAAAGATATCAAAAAGTTGTCAACTGATAAAAAGTAAATGATAATATGATTAACATTTTATTAGTTGACTAACTTTTTATATCTATAATAGGAACTGAGATAATTGAGCTCAAAGTGCACATATAGGGRATATGGGCTTCTAGTAGATCATTTCCAGTTTTCAACTATGTTCATTTTTGTATTCACAATTTTTCGGAATTCCAGAAACTTCGAGATCTCCCATGCTTTTCCGATCTTCCATGTTCTATCTCCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30499</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>70035</contig_pos>
        <strand></strand>
        <context>ttattagttg[G/A]ctacttctcg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATCAACTGATAAAATATTTATGACATTATGATAAGCATTTTATTAGTTG</left_flank>
        <right_flank>CTACTTCTCGATATCTTTATAGGACCCGAGATATATGGGTTTAAAGCTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACACCACTCTCTCTCTCTCTCTCTGTCCCTCCCAAATCCCAAAAAATCTAACAGCTGATCGATCATGAAAAGGTGATTAAATTTCAGACAGCTATGTCGTGTCGACAAACGAGACTCTCTAATTTTCGTGATTCAGATTTTGATGGTGCACTTTTAATGACCGCCGTCTGACGACACATGCATTGGGAAAAGGAGGAGGAGGATCAAGACACACTGTAATGACAACTCACCCAATCTCAAATTCAACTGCGCTCCGAAAAACGGCTGAGCATGTCTTGCCACTTTGCATAATTCCACAGGCTTGCTATTCCGCACCAAAATGTCAAATCCACCGATTTGGTTCTCGTTTCCCAGAAGTCTGAAAAATTAGCTAAATTTGTTAAGAATTACCGTAAACCATAAACTTTAAGTCCATATATCTCCGTTCATATAAGAGGTATCAAAAGGTAATCAACTGATAAAATATTTATGACATTATGATAAGCATTTTATTAGTTGGCTACTTCTCGATATCTTTATAGGACCCGAGATATATGGGTTTAAAGCTGACGGCATGGCTAGTCTTCTAATATATAGTAGAGGGCCTACGGTATTTGAAAACCCACTTTTTCTCAATATCCAAAACATCAATCATATGATTAAGAACTCGATACTTGAGTTCGAAATCTTCCTGAGACGATGCGGTAAGTGATGGACTGGCGTTCACCTAAAAAAAGAATCTTAAAAACCCATAAATCTCTTGCTTATCTTCACAGCTCAATGAGCACAAAAAGCCAATTGTTCGAAACGAAAAAAAAAATGTTTTTCAATTTTTGAAGTTAATGTCCAAGACAAATGGGAAATCAGATAACAACCTCTAACAGCCATGGCTTCAGATTTTCATCAAAGAGGATGTCGTAGCCGTAGAGTTCGAAGCAGTGGGTGTCCTGGAAAAAAAAGATAATTGAAAGCCCAATTATCTCGGCTCCTATGAGAGATATTAAAAATCTGTCAACTGAT</canonical>
            <polymorphic>AACACCACTCTCTCTCTCTCTCTCTGTCCCTCCCAAATCCCAAAAAATCTAACAGCTGATCGATCATGAAAAGGTGATTAAATTTCAGACAGCTATGTCGTGTCGACAAACGAGACTCTCTAATTTTCGTGATTCAGATTTTGATGGTGCACTTTTAATGACCGCCGTCTGACGACACATGCATTGGGAAAAGGAGGAGGAGGATCAAGACACACTGTAATGACAACTCACCCAATCTCAAATTCAACTGCGCTCCGAAAAACGGCTGAGCATGTCTTGCCACTTTGCATAATTCCACAGGCTTGCTATTCCGCACCAAAATGTCAAATCCACCGATTTGGTTCTCGTTTCCCAGAAGTCTGAAAAATTAGCTAAATTTGTTAAGAATTACCGTAAACCATAAACTTTAAGTCCATATATCTCCGTTCATATAAGAGGTATCAAAAGGTAATCAACTGATAAAATATTTATGACATTATGATAAGCATTTTATTAGTTGRCTACTTCTCGATATCTTTATAGGACCCGAGATATATGGGTTTAAAGCTGACGGCATGGCTAGTCTTCTAATATATAGTAGAGGGCCTACGGTATTTGAAAACCCACTTTTTCTCAATATCCAAAACATCAATCATATGATTAAGAACTCGATACTTGAGTTCGAAATCTTCCTGAGACGATGCGGTAAGTGATGGACTGGCGTTCACCTAAAAAAAGAATCTTAAAAACCCATAAATCTCTTGCTTATCTTCACAGCTCAATGAGCACAAAAAGCCAATTGTTCGAAACGAAAAAAAAAATGTTTTTCAATTTTTGAAGTTAATGTCCAAGACAAATGGGAAATCAGATAACAACCTCTAACAGCCATGGCTTCAGATTTTCATCAAAGAGGATGTCGTAGCCGTAGAGTTCGAAGCAGTGGGTGTCCTGGAAAAAAAAGATAATTGAAAGCCCAATTATCTCGGCTCCTATGAGAGATATTAAAAATCTGTCAACTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>173 172 129 90 70 55 50 46 37 36 35 31 26 18 14 12 6</canonical_bands>
                <polymorphic_bands>175 173 172 90 70 55 50 37 36 35 31 26 18 14 12 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCCAGAAGTCTGAAAAATTAG</pcr_primer_p1>
		<pcr_primer_p2>AAATACCGTAGGCCCTCTACTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCCCAGAAGTCTGAAAAATTAGCTAAATTTGTTAAGAATTACCGTAAACCATAAACTTTAAGTCCATATATCTCCGTTCATATAAGAGGTATCAAAAGGTAATCAACTGATAAAATATTTATGACATTATGATAAGCATTTTATTAGTTGGCTACTTCTCGATATCTTTATAGGACCCGAGATATATGGGTTTAAAGCTGACGGCATGGCTAGTCTTCTAATATATAGTAGAGGGCCTACGGTATTT</canonical_amplicon>
		<polymorphic_amplicon>TCCCAGAAGTCTGAAAAATTAGCTAAATTTGTTAAGAATTACCGTAAACCATAAACTTTAAGTCCATATATCTCCGTTCATATAAGAGGTATCAAAAGGTAATCAACTGATAAAATATTTATGACATTATGATAAGCATTTTATTAGTTGRCTACTTCTCGATATCTTTATAGGACCCGAGATATATGGGTTTAAAGCTGACGGCATGGCTAGTCTTCTAATATATAGTAGAGGGCCTACGGTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30500</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>73060</contig_pos>
        <strand>+</strand>
        <context>accaaaatct[G/T]ccywtggccm</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCT</left_flank>
        <right_flank>CCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCAGTTTCATTTCGTTGACAGATTTTTTTCTCTGGCACAAAAAACCCCAAAAAAAGTTTGATTGACAGAAAGGCAAGGTCCGTAGTCCCACTATCAGTAGAGAGCAGCTAGAAAAAATGCTAGAAAAAATGGCCATAATGACAACTATAAAAAAGAGGCCCCTAATCGAAAGAATTACGACTCAATGTCAGAGTACTCGCCATTTGTGCAAATTGCTTCATTATTGCCTACTTCTAATATGAATCGATATATTCGGGATGGAGACAATCCGGATATCACTGAGGAGAGAATGAAGGCGACATTCGATGCGGATAGGTTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCCGACGTCCTAGATCATTAATTATTTCCAGTCCCGCCGAGAAGTCGAAAAGTACATCGAAGATCACAAAGAGCTTCAGGACACCCATCCGACGCCATTCATGAGTCGAGAAGAATTAATCGACAATTCGGTTCGGAAGCTAGCTGGAATGGCAAAGTACCACAAGATGATCGACATGACCAATATTGAGAAGACCACTTATTTTTTGCAGTGAGCCCTAAAAACAGCTAAACACATTTTCCTTCATCCTTAAAGGAGTTTTTTCTTAATGAGAATCTTTCTCATTGAGAATCTCTCTTAATAAGGTTCTTAATGTATATTTCGT</canonical>
            <polymorphic>CCCAGTTTCATTTCGTTGACAGATTTTTTTCTCTGGCACAAAAAACCCCAAAAAAAGTTTGATTGACAGAAAGGCAAGGTCCGTAGTCCCACTATCAGTAGAGAGCAGCTAGAAAAAATGCTAGAAAAAATGGCCATAATGACAACTATAAAAAAGAGGCCCCTAATCGAAAGAATTACGACTCAATGTCAGAGTACTCGCCATTTGTGCAAATTGCTTCATTATTGCCTACTTCTAATATGAATCGATATATTCGGGATGGAGACAATCCGGATATCACTGAGGAGAGAATGAAGGCGACATTCGATGCGGATAGGTTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTKCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCCGACGTCCTAGATCATTAATTATTTCCAGTCCCGCCGAGAAGTCGAAAAGTACATCGAAGATCACAAAGAGCTTCAGGACACCCATCCGACGCCATTCATGAGTCGAGAAGAATTAATCGACAATTCGGTTCGGAAGCTAGCTGGAATGGCAAAGTACCACAAGATGATCGACATGACCAATATTGAGAAGACCACTTATTTTTTGCAGTGAGCCCTAAAAACAGCTAAACACATTTTCCTTCATCCTTAAAGGAGTTTTTTCTTAATGAGAATCTTTCTCATTGAGAATCTCTCTTAATAAGGTTCTTAATGTATATTTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAAAAGATTGAAGGTGAGTTA</pcr_primer_p1>
		<pcr_primer_p2>GGCTTGTATCTTGTGATAGGA</pcr_primer_p2>
		<pcr_amplicon_size>337</pcr_amplicon_size>
		<canonical_amplicon>GCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCC</canonical_amplicon>
		<polymorphic_amplicon>GCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTKCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30501</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>73063</contig_pos>
        <strand></strand>
        <context>aaaatctkcc[T/C]wtggccmgct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCC</left_flank>
        <right_flank>TTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTTCATTTCGTTGACAGATTTTTTTCTCTGGCACAAAAAACCCCAAAAAAAGTTTGATTGACAGAAAGGCAAGGTCCGTAGTCCCACTATCAGTAGAGAGCAGCTAGAAAAAATGCTAGAAAAAATGGCCATAATGACAACTATAAAAAAGAGGCCCCTAATCGAAAGAATTACGACTCAATGTCAGAGTACTCGCCATTTGTGCAAATTGCTTCATTATTGCCTACTTCTAATATGAATCGATATATTCGGGATGGAGACAATCCGGATATCACTGAGGAGAGAATGAAGGCGACATTCGATGCGGATAGGTTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCCGACGTCCTAGATCATTAATTATTTCCAGTCCCGCCGAGAAGTCGAAAAGTACATCGAAGATCACAAAGAGCTTCAGGACACCCATCCGACGCCATTCATGAGTCGAGAAGAATTAATCGACAATTCGGTTCGGAAGCTAGCTGGAATGGCAAAGTACCACAAGATGATCGACATGACCAATATTGAGAAGACCACTTATTTTTTGCAGTGAGCCCTAAAAACAGCTAAACACATTTTCCTTCATCCTTAAAGGAGTTTTTTCTTAATGAGAATCTTTCTCATTGAGAATCTCTCTTAATAAGGTTCTTAATGTATATTTCGTTCC</canonical>
            <polymorphic>AGTTTCATTTCGTTGACAGATTTTTTTCTCTGGCACAAAAAACCCCAAAAAAAGTTTGATTGACAGAAAGGCAAGGTCCGTAGTCCCACTATCAGTAGAGAGCAGCTAGAAAAAATGCTAGAAAAAATGGCCATAATGACAACTATAAAAAAGAGGCCCCTAATCGAAAGAATTACGACTCAATGTCAGAGTACTCGCCATTTGTGCAAATTGCTTCATTATTGCCTACTTCTAATATGAATCGATATATTCGGGATGGAGACAATCCGGATATCACTGAGGAGAGAATGAAGGCGACATTCGATGCGGATAGGTTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCYTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCCGACGTCCTAGATCATTAATTATTTCCAGTCCCGCCGAGAAGTCGAAAAGTACATCGAAGATCACAAAGAGCTTCAGGACACCCATCCGACGCCATTCATGAGTCGAGAAGAATTAATCGACAATTCGGTTCGGAAGCTAGCTGGAATGGCAAAGTACCACAAGATGATCGACATGACCAATATTGAGAAGACCACTTATTTTTTGCAGTGAGCCCTAAAAACAGCTAAACACATTTTCCTTCATCCTTAAAGGAGTTTTTTCTTAATGAGAATCTTTCTCATTGAGAATCTCTCTTAATAAGGTTCTTAATGTATATTTCGTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAAAAGATTGAAGGTGAGTTA</pcr_primer_p1>
		<pcr_primer_p2>GGCTTGTATCTTGTGATAGGA</pcr_primer_p2>
		<pcr_amplicon_size>337</pcr_amplicon_size>
		<canonical_amplicon>GCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCC</canonical_amplicon>
		<polymorphic_amplicon>GCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCYTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30502</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>73064</contig_pos>
        <strand></strand>
        <context>aaatctkccy[T/A]tggccmgcta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCT</left_flank>
        <right_flank>TGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTCATTTCGTTGACAGATTTTTTTCTCTGGCACAAAAAACCCCAAAAAAAGTTTGATTGACAGAAAGGCAAGGTCCGTAGTCCCACTATCAGTAGAGAGCAGCTAGAAAAAATGCTAGAAAAAATGGCCATAATGACAACTATAAAAAAGAGGCCCCTAATCGAAAGAATTACGACTCAATGTCAGAGTACTCGCCATTTGTGCAAATTGCTTCATTATTGCCTACTTCTAATATGAATCGATATATTCGGGATGGAGACAATCCGGATATCACTGAGGAGAGAATGAAGGCGACATTCGATGCGGATAGGTTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCCGACGTCCTAGATCATTAATTATTTCCAGTCCCGCCGAGAAGTCGAAAAGTACATCGAAGATCACAAAGAGCTTCAGGACACCCATCCGACGCCATTCATGAGTCGAGAAGAATTAATCGACAATTCGGTTCGGAAGCTAGCTGGAATGGCAAAGTACCACAAGATGATCGACATGACCAATATTGAGAAGACCACTTATTTTTTGCAGTGAGCCCTAAAAACAGCTAAACACATTTTCCTTCATCCTTAAAGGAGTTTTTTCTTAATGAGAATCTTTCTCATTGAGAATCTCTCTTAATAAGGTTCTTAATGTATATTTCGTTCCC</canonical>
            <polymorphic>GTTTCATTTCGTTGACAGATTTTTTTCTCTGGCACAAAAAACCCCAAAAAAAGTTTGATTGACAGAAAGGCAAGGTCCGTAGTCCCACTATCAGTAGAGAGCAGCTAGAAAAAATGCTAGAAAAAATGGCCATAATGACAACTATAAAAAAGAGGCCCCTAATCGAAAGAATTACGACTCAATGTCAGAGTACTCGCCATTTGTGCAAATTGCTTCATTATTGCCTACTTCTAATATGAATCGATATATTCGGGATGGAGACAATCCGGATATCACTGAGGAGAGAATGAAGGCGACATTCGATGCGGATAGGTTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTWTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCCGACGTCCTAGATCATTAATTATTTCCAGTCCCGCCGAGAAGTCGAAAAGTACATCGAAGATCACAAAGAGCTTCAGGACACCCATCCGACGCCATTCATGAGTCGAGAAGAATTAATCGACAATTCGGTTCGGAAGCTAGCTGGAATGGCAAAGTACCACAAGATGATCGACATGACCAATATTGAGAAGACCACTTATTTTTTGCAGTGAGCCCTAAAAACAGCTAAACACATTTTCCTTCATCCTTAAAGGAGTTTTTTCTTAATGAGAATCTTTCTCATTGAGAATCTCTCTTAATAAGGTTCTTAATGTATATTTCGTTCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAAAAGATTGAAGGTGAGTTA</pcr_primer_p1>
		<pcr_primer_p2>GGCTTGTATCTTGTGATAGGA</pcr_primer_p2>
		<pcr_amplicon_size>337</pcr_amplicon_size>
		<canonical_amplicon>GCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCC</canonical_amplicon>
		<polymorphic_amplicon>GCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTWTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30503</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>73070</contig_pos>
        <strand>+</strand>
        <context>kccywtggcc[A/C/T]gctatwcarc</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C/T</alleles>
        <left_flank>CCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCC</left_flank>
        <right_flank>GCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGTTGACAGATTTTTTTCTCTGGCACAAAAAACCCCAAAAAAAGTTTGATTGACAGAAAGGCAAGGTCCGTAGTCCCACTATCAGTAGAGAGCAGCTAGAAAAAATGCTAGAAAAAATGGCCATAATGACAACTATAAAAAAGAGGCCCCTAATCGAAAGAATTACGACTCAATGTCAGAGTACTCGCCATTTGTGCAAATTGCTTCATTATTGCCTACTTCTAATATGAATCGATATATTCGGGATGGAGACAATCCGGATATCACTGAGGAGAGAATGAAGGCGACATTCGATGCGGATAGGTTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCCGACGTCCTAGATCATTAATTATTTCCAGTCCCGCCGAGAAGTCGAAAAGTACATCGAAGATCACAAAGAGCTTCAGGACACCCATCCGACGCCATTCATGAGTCGAGAAGAATTAATCGACAATTCGGTTCGGAAGCTAGCTGGAATGGCAAAGTACCACAAGATGATCGACATGACCAATATTGAGAAGACCACTTATTTTTTGCAGTGAGCCCTAAAAACAGCTAAACACATTTTCCTTCATCCTTAAAGGAGTTTTTTCTTAATGAGAATCTTTCTCATTGAGAATCTCTCTTAATAAGGTTCTTAATGTATATTTCGTTCCCCATACT</canonical>
            <polymorphic>TTTCGTTGACAGATTTTTTTCTCTGGCACAAAAAACCCCAAAAAAAGTTTGATTGACAGAAAGGCAAGGTCCGTAGTCCCACTATCAGTAGAGAGCAGCTAGAAAAAATGCTAGAAAAAATGGCCATAATGACAACTATAAAAAAGAGGCCCCTAATCGAAAGAATTACGACTCAATGTCAGAGTACTCGCCATTTGTGCAAATTGCTTCATTATTGCCTACTTCTAATATGAATCGATATATTCGGGATGGAGACAATCCGGATATCACTGAGGAGAGAATGAAGGCGACATTCGATGCGGATAGGTTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCMGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCCGACGTCCTAGATCATTAATTATTTCCAGTCCCGCCGAGAAGTCGAAAAGTACATCGAAGATCACAAAGAGCTTCAGGACACCCATCCGACGCCATTCATGAGTCGAGAAGAATTAATCGACAATTCGGTTCGGAAGCTAGCTGGAATGGCAAAGTACCACAAGATGATCGACATGACCAATATTGAGAAGACCACTTATTTTTTGCAGTGAGCCCTAAAAACAGCTAAACACATTTTCCTTCATCCTTAAAGGAGTTTTTTCTTAATGAGAATCTTTCTCATTGAGAATCTCTCTTAATAAGGTTCTTAATGTATATTTCGTTCCCCATACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>454 258 123 116 49</canonical_bands>
                <polymorphic_bands>454 258 165 123</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTAAAAGATTGAAGGTGAGTTA</pcr_primer_p1>
		<pcr_primer_p2>GGCTTGTATCTTGTGATAGGA</pcr_primer_p2>
		<pcr_amplicon_size>337</pcr_amplicon_size>
		<canonical_amplicon>GCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCC</canonical_amplicon>
		<polymorphic_amplicon>GCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCMGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30504</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>73076</contig_pos>
        <strand>+</strand>
        <context>ggccmgctat[A/T]carccgtttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTAT</left_flank>
        <right_flank>CAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACAGATTTTTTTCTCTGGCACAAAAAACCCCAAAAAAAGTTTGATTGACAGAAAGGCAAGGTCCGTAGTCCCACTATCAGTAGAGAGCAGCTAGAAAAAATGCTAGAAAAAATGGCCATAATGACAACTATAAAAAAGAGGCCCCTAATCGAAAGAATTACGACTCAATGTCAGAGTACTCGCCATTTGTGCAAATTGCTTCATTATTGCCTACTTCTAATATGAATCGATATATTCGGGATGGAGACAATCCGGATATCACTGAGGAGAGAATGAAGGCGACATTCGATGCGGATAGGTTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCCGACGTCCTAGATCATTAATTATTTCCAGTCCCGCCGAGAAGTCGAAAAGTACATCGAAGATCACAAAGAGCTTCAGGACACCCATCCGACGCCATTCATGAGTCGAGAAGAATTAATCGACAATTCGGTTCGGAAGCTAGCTGGAATGGCAAAGTACCACAAGATGATCGACATGACCAATATTGAGAAGACCACTTATTTTTTGCAGTGAGCCCTAAAAACAGCTAAACACATTTTCCTTCATCCTTAAAGGAGTTTTTTCTTAATGAGAATCTTTCTCATTGAGAATCTCTCTTAATAAGGTTCTTAATGTATATTTCGTTCCCCATACTGTCGCC</canonical>
            <polymorphic>TGACAGATTTTTTTCTCTGGCACAAAAAACCCCAAAAAAAGTTTGATTGACAGAAAGGCAAGGTCCGTAGTCCCACTATCAGTAGAGAGCAGCTAGAAAAAATGCTAGAAAAAATGGCCATAATGACAACTATAAAAAAGAGGCCCCTAATCGAAAGAATTACGACTCAATGTCAGAGTACTCGCCATTTGTGCAAATTGCTTCATTATTGCCTACTTCTAATATGAATCGATATATTCGGGATGGAGACAATCCGGATATCACTGAGGAGAGAATGAAGGCGACATTCGATGCGGATAGGTTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATWCAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCCGACGTCCTAGATCATTAATTATTTCCAGTCCCGCCGAGAAGTCGAAAAGTACATCGAAGATCACAAAGAGCTTCAGGACACCCATCCGACGCCATTCATGAGTCGAGAAGAATTAATCGACAATTCGGTTCGGAAGCTAGCTGGAATGGCAAAGTACCACAAGATGATCGACATGACCAATATTGAGAAGACCACTTATTTTTTGCAGTGAGCCCTAAAAACAGCTAAACACATTTTCCTTCATCCTTAAAGGAGTTTTTTCTTAATGAGAATCTTTCTCATTGAGAATCTCTCTTAATAAGGTTCTTAATGTATATTTCGTTCCCCATACTGTCGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAAAAGATTGAAGGTGAGTTA</pcr_primer_p1>
		<pcr_primer_p2>GGCTTGTATCTTGTGATAGGA</pcr_primer_p2>
		<pcr_amplicon_size>337</pcr_amplicon_size>
		<canonical_amplicon>GCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCC</canonical_amplicon>
		<polymorphic_amplicon>GCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATWCAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30505</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>73079</contig_pos>
        <strand>+</strand>
        <context>cmgctatwca[A/G]ccgtttttga</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACA</left_flank>
        <right_flank>CCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGATTTTTTTCTCTGGCACAAAAAACCCCAAAAAAAGTTTGATTGACAGAAAGGCAAGGTCCGTAGTCCCACTATCAGTAGAGAGCAGCTAGAAAAAATGCTAGAAAAAATGGCCATAATGACAACTATAAAAAAGAGGCCCCTAATCGAAAGAATTACGACTCAATGTCAGAGTACTCGCCATTTGTGCAAATTGCTTCATTATTGCCTACTTCTAATATGAATCGATATATTCGGGATGGAGACAATCCGGATATCACTGAGGAGAGAATGAAGGCGACATTCGATGCGGATAGGTTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCCGACGTCCTAGATCATTAATTATTTCCAGTCCCGCCGAGAAGTCGAAAAGTACATCGAAGATCACAAAGAGCTTCAGGACACCCATCCGACGCCATTCATGAGTCGAGAAGAATTAATCGACAATTCGGTTCGGAAGCTAGCTGGAATGGCAAAGTACCACAAGATGATCGACATGACCAATATTGAGAAGACCACTTATTTTTTGCAGTGAGCCCTAAAAACAGCTAAACACATTTTCCTTCATCCTTAAAGGAGTTTTTTCTTAATGAGAATCTTTCTCATTGAGAATCTCTCTTAATAAGGTTCTTAATGTATATTTCGTTCCCCATACTGTCGCCCAA</canonical>
            <polymorphic>CAGATTTTTTTCTCTGGCACAAAAAACCCCAAAAAAAGTTTGATTGACAGAAAGGCAAGGTCCGTAGTCCCACTATCAGTAGAGAGCAGCTAGAAAAAATGCTAGAAAAAATGGCCATAATGACAACTATAAAAAAGAGGCCCCTAATCGAAAGAATTACGACTCAATGTCAGAGTACTCGCCATTTGTGCAAATTGCTTCATTATTGCCTACTTCTAATATGAATCGATATATTCGGGATGGAGACAATCCGGATATCACTGAGGAGAGAATGAAGGCGACATTCGATGCGGATAGGTTCACAGAGTTCTATCATGGAGGTGCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACARCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCCGACGTCCTAGATCATTAATTATTTCCAGTCCCGCCGAGAAGTCGAAAAGTACATCGAAGATCACAAAGAGCTTCAGGACACCCATCCGACGCCATTCATGAGTCGAGAAGAATTAATCGACAATTCGGTTCGGAAGCTAGCTGGAATGGCAAAGTACCACAAGATGATCGACATGACCAATATTGAGAAGACCACTTATTTTTTGCAGTGAGCCCTAAAAACAGCTAAACACATTTTCCTTCATCCTTAAAGGAGTTTTTTCTTAATGAGAATCTTTCTCATTGAGAATCTCTCTTAATAAGGTTCTTAATGTATATTTCGTTCCCCATACTGTCGCCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>232 117 89 72 72 66 50 46 37 37 37 26 25 21 17 12 12 12 12 4 4</canonical_bands>
                <polymorphic_bands>232 117 89 72 72 66 50 49 46 37 37 26 25 21 17 12 12 12 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTAAAAGATTGAAGGTGAGTTA</pcr_primer_p1>
		<pcr_primer_p2>GGCTTGTATCTTGTGATAGGA</pcr_primer_p2>
		<pcr_amplicon_size>337</pcr_amplicon_size>
		<canonical_amplicon>GCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACAGCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCC</canonical_amplicon>
		<polymorphic_amplicon>GCTAAAAGATTGAAGGTGAGTTATACAAGTCGGGTTTGGGCAAGTAGAGGCCAAAATCTGCACTTGGCCCGCTAAACATCCGTTTTTGGGCATTTTTAGACCAAGATCTGCCTTTGGCCCGCTATACAGCCATTATTGGCAGGTTAAGACCAAAATCTGCCTTTGGCCTGCTATACARCCGTTTTTGAACCAGTTCAACCAAACTCTGTCTTTGGCCAGCTATTCAACCGTTTAAGGGCAAATTCCAACAAAAATCTGCCCATGGCCCGTCATACAGCCGTTTTGGGCATTTCCTTATCAAAATCTGCCCATGGCTTCCTATCACAAGATACAAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30506</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>100565</contig_pos>
        <strand></strand>
        <context>atgggaattt[C/T]gtcaactcat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATAACTTTGAGTCCAATTATCTCGGTTCCATGAAAAGATATGGGAATTT</left_flank>
        <right_flank>GTCAACTCATAAAACGTTCTTCGTAAAATTATCAACATTTAATCAGTTAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCTCTTTCTCTTTCTCCTTCTCCTGTTGCATCTTCTCCATCAACATCATCTTGATAGCCTTGCTAGCAAACTCTGGCTGTCCAACCATAGCGGACTCTCTTCGTGGAACTGCTGTAGATTGACGTGCATGGATACTCTGGAATGATTTATAATAGGTTGGGTTTGAAGAAGTCGAATGGAAACTTCTGGAATTCTAGTTAAAAATTCCAGAAGCCCTCATTCAAAGAAACTATTAGGTATGAAGACTGAGGCGCAAAATGCGAACATTTTGGGTGAGAGCAATAGTAGAGAGAAGTGGGTATAGTGAGAAAATACGATGAGTTTACGATTGTATTGGGTGGATTATGAATACAAAATAGAGGTGGATAAAGTTACATGTCTCTGAAACTTACCGCTCGTGCCGAACTCGTTTCGGTTTGCTTAAATTGTTTTATTAGAATAGAGGACCATAACTTTGAGTCCAATTATCTCGGTTCCATGAAAAGATATGGGAATTTCGTCAACTCATAAAACGTTCTTCGTAAAATTATCAACATTTAATCAGTTAGCCACATTTTGATATCTTTTAGATAAACCGAGATAATTGAGCTTAAAAGAATAGCCATAAAGGCTGTGATAGGACGCCACCTTAGTCTTGCCGTTTGAGCTCAATTATCTCAGCTCCTGTTTGAGATATAAAAAAGTTGTCAACTGATAAATTATTTCTCATATTATCAACAACATTTTATCAGTTGACAAAAATTTGATATCATTTATAGGAATTGAGATAAATTAGCTCAAAGCTCAACGTCTAGGGTGGGGTCTATTAAAGCATTTACGGTATTACGGTAGTTAAGACAGATTTTTTTCAAAATTTGAAAAATATTAATCTAATGCTAATAAATCAAAAAACTCACTCTTCTCAATGCTTGCTGTTTGGACTGCCAATCATCTGCTAGAAGTTTCCTCTTGTCGATTCTAGTTGACACATTTCTGAAATTTCCCAATTTAAGGTACCG</canonical>
            <polymorphic>CTTCTCTTTCTCTTTCTCCTTCTCCTGTTGCATCTTCTCCATCAACATCATCTTGATAGCCTTGCTAGCAAACTCTGGCTGTCCAACCATAGCGGACTCTCTTCGTGGAACTGCTGTAGATTGACGTGCATGGATACTCTGGAATGATTTATAATAGGTTGGGTTTGAAGAAGTCGAATGGAAACTTCTGGAATTCTAGTTAAAAATTCCAGAAGCCCTCATTCAAAGAAACTATTAGGTATGAAGACTGAGGCGCAAAATGCGAACATTTTGGGTGAGAGCAATAGTAGAGAGAAGTGGGTATAGTGAGAAAATACGATGAGTTTACGATTGTATTGGGTGGATTATGAATACAAAATAGAGGTGGATAAAGTTACATGTCTCTGAAACTTACCGCTCGTGCCGAACTCGTTTCGGTTTGCTTAAATTGTTTTATTAGAATAGAGGACCATAACTTTGAGTCCAATTATCTCGGTTCCATGAAAAGATATGGGAATTTYGTCAACTCATAAAACGTTCTTCGTAAAATTATCAACATTTAATCAGTTAGCCACATTTTGATATCTTTTAGATAAACCGAGATAATTGAGCTTAAAAGAATAGCCATAAAGGCTGTGATAGGACGCCACCTTAGTCTTGCCGTTTGAGCTCAATTATCTCAGCTCCTGTTTGAGATATAAAAAAGTTGTCAACTGATAAATTATTTCTCATATTATCAACAACATTTTATCAGTTGACAAAAATTTGATATCATTTATAGGAATTGAGATAAATTAGCTCAAAGCTCAACGTCTAGGGTGGGGTCTATTAAAGCATTTACGGTATTACGGTAGTTAAGACAGATTTTTTTCAAAATTTGAAAAATATTAATCTAATGCTAATAAATCAAAAAACTCACTCTTCTCAATGCTTGCTGTTTGGACTGCCAATCATCTGCTAGAAGTTTCCTCTTGTCGATTCTAGTTGACACATTTCTGAAATTTCCCAATTTAAGGTACCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTTTTATTAGAATAGAGGACCAT</pcr_primer_p1>
		<pcr_primer_p2>GCATTGAGAAGAGTGAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>483</pcr_amplicon_size>
		<canonical_amplicon>TTGTTTTATTAGAATAGAGGACCATAACTTTGAGTCCAATTATCTCGGTTCCATGAAAAGATATGGGAATTTCGTCAACTCATAAAACGTTCTTCGTAAAATTATCAACATTTAATCAGTTAGCCACATTTTGATATCTTTTAGATAAACCGAGATAATTGAGCTTAAAAGAATAGCCATAAAGGCTGTGATAGGACGCCACCTTAGTCTTGCCGTTTGAGCTCAATTATCTCAGCTCCTGTTTGAGATATAAAAAAGTTGTCAACTGATAAATTATTTCTCATATTATCAACAACATTTTATCAGTTGACAAAAATTTGATATCATTTATAGGAATTGAGATAAATTAGCTCAAAGCTCAACGTCTAGGGTGGGGTCTATTAAAGCATTTACGGTATTACGGTAGTTAAGACAGATTTTTTTCAAAATTTGAAAAATATTAATCTAATGCTAATAAATCAAAAAACTCACTCTTCTCAATGC</canonical_amplicon>
		<polymorphic_amplicon>TTGTTTTATTAGAATAGAGGACCATAACTTTGAGTCCAATTATCTCGGTTCCATGAAAAGATATGGGAATTTYGTCAACTCATAAAACGTTCTTCGTAAAATTATCAACATTTAATCAGTTAGCCACATTTTGATATCTTTTAGATAAACCGAGATAATTGAGCTTAAAAGAATAGCCATAAAGGCTGTGATAGGACGCCACCTTAGTCTTGCCGTTTGAGCTCAATTATCTCAGCTCCTGTTTGAGATATAAAAAAGTTGTCAACTGATAAATTATTTCTCATATTATCAACAACATTTTATCAGTTGACAAAAATTTGATATCATTTATAGGAATTGAGATAAATTAGCTCAAAGCTCAACGTCTAGGGTGGGGTCTATTAAAGCATTTACGGTATTACGGTAGTTAAGACAGATTTTTTTCAAAATTTGAAAAATATTAATCTAATGCTAATAAATCAAAAAACTCACTCTTCTCAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30507</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>100594</contig_pos>
        <strand></strand>
        <context>cttcgtaaaa[T/G]tatcaacatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CATGAAAAGATATGGGAATTTCGTCAACTCATAAAACGTTCTTCGTAAAA</left_flank>
        <right_flank>TATCAACATTTAATCAGTTAGCCACATTTTGATATCTTTTAGATAAACCG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCATCTTCTCCATCAACATCATCTTGATAGCCTTGCTAGCAAACTCTGGCTGTCCAACCATAGCGGACTCTCTTCGTGGAACTGCTGTAGATTGACGTGCATGGATACTCTGGAATGATTTATAATAGGTTGGGTTTGAAGAAGTCGAATGGAAACTTCTGGAATTCTAGTTAAAAATTCCAGAAGCCCTCATTCAAAGAAACTATTAGGTATGAAGACTGAGGCGCAAAATGCGAACATTTTGGGTGAGAGCAATAGTAGAGAGAAGTGGGTATAGTGAGAAAATACGATGAGTTTACGATTGTATTGGGTGGATTATGAATACAAAATAGAGGTGGATAAAGTTACATGTCTCTGAAACTTACCGCTCGTGCCGAACTCGTTTCGGTTTGCTTAAATTGTTTTATTAGAATAGAGGACCATAACTTTGAGTCCAATTATCTCGGTTCCATGAAAAGATATGGGAATTTCGTCAACTCATAAAACGTTCTTCGTAAAATTATCAACATTTAATCAGTTAGCCACATTTTGATATCTTTTAGATAAACCGAGATAATTGAGCTTAAAAGAATAGCCATAAAGGCTGTGATAGGACGCCACCTTAGTCTTGCCGTTTGAGCTCAATTATCTCAGCTCCTGTTTGAGATATAAAAAAGTTGTCAACTGATAAATTATTTCTCATATTATCAACAACATTTTATCAGTTGACAAAAATTTGATATCATTTATAGGAATTGAGATAAATTAGCTCAAAGCTCAACGTCTAGGGTGGGGTCTATTAAAGCATTTACGGTATTACGGTAGTTAAGACAGATTTTTTTCAAAATTTGAAAAATATTAATCTAATGCTAATAAATCAAAAAACTCACTCTTCTCAATGCTTGCTGTTTGGACTGCCAATCATCTGCTAGAAGTTTCCTCTTGTCGATTCTAGTTGACACATTTCTGAAATTTCCCAATTTAAGGTACCGTACACCCTCTAGGACACCTTGCACTTCGC</canonical>
            <polymorphic>GCATCTTCTCCATCAACATCATCTTGATAGCCTTGCTAGCAAACTCTGGCTGTCCAACCATAGCGGACTCTCTTCGTGGAACTGCTGTAGATTGACGTGCATGGATACTCTGGAATGATTTATAATAGGTTGGGTTTGAAGAAGTCGAATGGAAACTTCTGGAATTCTAGTTAAAAATTCCAGAAGCCCTCATTCAAAGAAACTATTAGGTATGAAGACTGAGGCGCAAAATGCGAACATTTTGGGTGAGAGCAATAGTAGAGAGAAGTGGGTATAGTGAGAAAATACGATGAGTTTACGATTGTATTGGGTGGATTATGAATACAAAATAGAGGTGGATAAAGTTACATGTCTCTGAAACTTACCGCTCGTGCCGAACTCGTTTCGGTTTGCTTAAATTGTTTTATTAGAATAGAGGACCATAACTTTGAGTCCAATTATCTCGGTTCCATGAAAAGATATGGGAATTTCGTCAACTCATAAAACGTTCTTCGTAAAAKTATCAACATTTAATCAGTTAGCCACATTTTGATATCTTTTAGATAAACCGAGATAATTGAGCTTAAAAGAATAGCCATAAAGGCTGTGATAGGACGCCACCTTAGTCTTGCCGTTTGAGCTCAATTATCTCAGCTCCTGTTTGAGATATAAAAAAGTTGTCAACTGATAAATTATTTCTCATATTATCAACAACATTTTATCAGTTGACAAAAATTTGATATCATTTATAGGAATTGAGATAAATTAGCTCAAAGCTCAACGTCTAGGGTGGGGTCTATTAAAGCATTTACGGTATTACGGTAGTTAAGACAGATTTTTTTCAAAATTTGAAAAATATTAATCTAATGCTAATAAATCAAAAAACTCACTCTTCTCAATGCTTGCTGTTTGGACTGCCAATCATCTGCTAGAAGTTTCCTCTTGTCGATTCTAGTTGACACATTTCTGAAATTTCCCAATTTAAGGTACCGTACACCCTCTAGGACACCTTGCACTTCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>221 162 125 82 68 57 47 43 43 39 32 30 20 13 10 8</canonical_bands>
                <polymorphic_bands>221 162 125 89 82 68 47 43 43 39 30 20 13 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTTTTATTAGAATAGAGGACCAT</pcr_primer_p1>
		<pcr_primer_p2>GCATTGAGAAGAGTGAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>483</pcr_amplicon_size>
		<canonical_amplicon>TTGTTTTATTAGAATAGAGGACCATAACTTTGAGTCCAATTATCTCGGTTCCATGAAAAGATATGGGAATTTCGTCAACTCATAAAACGTTCTTCGTAAAATTATCAACATTTAATCAGTTAGCCACATTTTGATATCTTTTAGATAAACCGAGATAATTGAGCTTAAAAGAATAGCCATAAAGGCTGTGATAGGACGCCACCTTAGTCTTGCCGTTTGAGCTCAATTATCTCAGCTCCTGTTTGAGATATAAAAAAGTTGTCAACTGATAAATTATTTCTCATATTATCAACAACATTTTATCAGTTGACAAAAATTTGATATCATTTATAGGAATTGAGATAAATTAGCTCAAAGCTCAACGTCTAGGGTGGGGTCTATTAAAGCATTTACGGTATTACGGTAGTTAAGACAGATTTTTTTCAAAATTTGAAAAATATTAATCTAATGCTAATAAATCAAAAAACTCACTCTTCTCAATGC</canonical_amplicon>
		<polymorphic_amplicon>TTGTTTTATTAGAATAGAGGACCATAACTTTGAGTCCAATTATCTCGGTTCCATGAAAAGATATGGGAATTTCGTCAACTCATAAAACGTTCTTCGTAAAAKTATCAACATTTAATCAGTTAGCCACATTTTGATATCTTTTAGATAAACCGAGATAATTGAGCTTAAAAGAATAGCCATAAAGGCTGTGATAGGACGCCACCTTAGTCTTGCCGTTTGAGCTCAATTATCTCAGCTCCTGTTTGAGATATAAAAAAGTTGTCAACTGATAAATTATTTCTCATATTATCAACAACATTTTATCAGTTGACAAAAATTTGATATCATTTATAGGAATTGAGATAAATTAGCTCAAAGCTCAACGTCTAGGGTGGGGTCTATTAAAGCATTTACGGTATTACGGTAGTTAAGACAGATTTTTTTCAAAATTTGAAAAATATTAATCTAATGCTAATAAATCAAAAAACTCACTCTTCTCAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30508</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>100743</contig_pos>
        <strand></strand>
        <context>gtttgagata[T/G]aaaaaagttg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ACCTTAGTCTTGCCGTTTGAGCTCAATTATCTCAGCTCCTGTTTGAGATA</left_flank>
        <right_flank>AAAAAAGTTGTCAACTGATAAATTATTTCTCATATTATCAACAACATTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAAACTTCTGGAATTCTAGTTAAAAATTCCAGAAGCCCTCATTCAAAGAAACTATTAGGTATGAAGACTGAGGCGCAAAATGCGAACATTTTGGGTGAGAGCAATAGTAGAGAGAAGTGGGTATAGTGAGAAAATACGATGAGTTTACGATTGTATTGGGTGGATTATGAATACAAAATAGAGGTGGATAAAGTTACATGTCTCTGAAACTTACCGCTCGTGCCGAACTCGTTTCGGTTTGCTTAAATTGTTTTATTAGAATAGAGGACCATAACTTTGAGTCCAATTATCTCGGTTCCATGAAAAGATATGGGAATTTCGTCAACTCATAAAACGTTCTTCGTAAAATTATCAACATTTAATCAGTTAGCCACATTTTGATATCTTTTAGATAAACCGAGATAATTGAGCTTAAAAGAATAGCCATAAAGGCTGTGATAGGACGCCACCTTAGTCTTGCCGTTTGAGCTCAATTATCTCAGCTCCTGTTTGAGATATAAAAAAGTTGTCAACTGATAAATTATTTCTCATATTATCAACAACATTTTATCAGTTGACAAAAATTTGATATCATTTATAGGAATTGAGATAAATTAGCTCAAAGCTCAACGTCTAGGGTGGGGTCTATTAAAGCATTTACGGTATTACGGTAGTTAAGACAGATTTTTTTCAAAATTTGAAAAATATTAATCTAATGCTAATAAATCAAAAAACTCACTCTTCTCAATGCTTGCTGTTTGGACTGCCAATCATCTGCTAGAAGTTTCCTCTTGTCGATTCTAGTTGACACATTTCTGAAATTTCCCAATTTAAGGTACCGTACACCCTCTAGGACACCTTGCACTTCGCGCTCAATTACCTCGATTTCTGTGAAAGATATCAAAAAATTGTCAACTGATATAATATTGGTGATATTATGGTAAACAATTTATCAGTTGACAACTTTTTGATATCTTGCATAGGAACTGAGATAATTGAAATCAAAGTTCAAGTGTAGG</canonical>
            <polymorphic>TGGAAACTTCTGGAATTCTAGTTAAAAATTCCAGAAGCCCTCATTCAAAGAAACTATTAGGTATGAAGACTGAGGCGCAAAATGCGAACATTTTGGGTGAGAGCAATAGTAGAGAGAAGTGGGTATAGTGAGAAAATACGATGAGTTTACGATTGTATTGGGTGGATTATGAATACAAAATAGAGGTGGATAAAGTTACATGTCTCTGAAACTTACCGCTCGTGCCGAACTCGTTTCGGTTTGCTTAAATTGTTTTATTAGAATAGAGGACCATAACTTTGAGTCCAATTATCTCGGTTCCATGAAAAGATATGGGAATTTCGTCAACTCATAAAACGTTCTTCGTAAAATTATCAACATTTAATCAGTTAGCCACATTTTGATATCTTTTAGATAAACCGAGATAATTGAGCTTAAAAGAATAGCCATAAAGGCTGTGATAGGACGCCACCTTAGTCTTGCCGTTTGAGCTCAATTATCTCAGCTCCTGTTTGAGATAKAAAAAAGTTGTCAACTGATAAATTATTTCTCATATTATCAACAACATTTTATCAGTTGACAAAAATTTGATATCATTTATAGGAATTGAGATAAATTAGCTCAAAGCTCAACGTCTAGGGTGGGGTCTATTAAAGCATTTACGGTATTACGGTAGTTAAGACAGATTTTTTTCAAAATTTGAAAAATATTAATCTAATGCTAATAAATCAAAAAACTCACTCTTCTCAATGCTTGCTGTTTGGACTGCCAATCATCTGCTAGAAGTTTCCTCTTGTCGATTCTAGTTGACACATTTCTGAAATTTCCCAATTTAAGGTACCGTACACCCTCTAGGACACCTTGCACTTCGCGCTCAATTACCTCGATTTCTGTGAAAGATATCAAAAAATTGTCAACTGATATAATATTGGTGATATTATGGTAAACAATTTATCAGTTGACAACTTTTTGATATCTTGCATAGGAACTGAGATAATTGAAATCAAAGTTCAAGTGTAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTTTTATTAGAATAGAGGACCAT</pcr_primer_p1>
		<pcr_primer_p2>GCATTGAGAAGAGTGAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>483</pcr_amplicon_size>
		<canonical_amplicon>TTGTTTTATTAGAATAGAGGACCATAACTTTGAGTCCAATTATCTCGGTTCCATGAAAAGATATGGGAATTTCGTCAACTCATAAAACGTTCTTCGTAAAATTATCAACATTTAATCAGTTAGCCACATTTTGATATCTTTTAGATAAACCGAGATAATTGAGCTTAAAAGAATAGCCATAAAGGCTGTGATAGGACGCCACCTTAGTCTTGCCGTTTGAGCTCAATTATCTCAGCTCCTGTTTGAGATATAAAAAAGTTGTCAACTGATAAATTATTTCTCATATTATCAACAACATTTTATCAGTTGACAAAAATTTGATATCATTTATAGGAATTGAGATAAATTAGCTCAAAGCTCAACGTCTAGGGTGGGGTCTATTAAAGCATTTACGGTATTACGGTAGTTAAGACAGATTTTTTTCAAAATTTGAAAAATATTAATCTAATGCTAATAAATCAAAAAACTCACTCTTCTCAATGC</canonical_amplicon>
		<polymorphic_amplicon>TTGTTTTATTAGAATAGAGGACCATAACTTTGAGTCCAATTATCTCGGTTCCATGAAAAGATATGGGAATTTCGTCAACTCATAAAACGTTCTTCGTAAAATTATCAACATTTAATCAGTTAGCCACATTTTGATATCTTTTAGATAAACCGAGATAATTGAGCTTAAAAGAATAGCCATAAAGGCTGTGATAGGACGCCACCTTAGTCTTGCCGTTTGAGCTCAATTATCTCAGCTCCTGTTTGAGATAKAAAAAAGTTGTCAACTGATAAATTATTTCTCATATTATCAACAACATTTTATCAGTTGACAAAAATTTGATATCATTTATAGGAATTGAGATAAATTAGCTCAAAGCTCAACGTCTAGGGTGGGGTCTATTAAAGCATTTACGGTATTACGGTAGTTAAGACAGATTTTTTTCAAAATTTGAAAAATATTAATCTAATGCTAATAAATCAAAAAACTCACTCTTCTCAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30509</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>100870</contig_pos>
        <strand>+</strand>
        <context>agggtggggt[A/G]tattaaagca</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATAGGAATTGAGATAAATTAGCTCAAAGCTCAACGTCTAGGGTGGGGT</left_flank>
        <right_flank>TATTAAAGCATTTACGGTATTACGGTAGTTAAGACAGATTTTTTTCAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGAGAAAATACGATGAGTTTACGATTGTATTGGGTGGATTATGAATACAAAATAGAGGTGGATAAAGTTACATGTCTCTGAAACTTACCGCTCGTGCCGAACTCGTTTCGGTTTGCTTAAATTGTTTTATTAGAATAGAGGACCATAACTTTGAGTCCAATTATCTCGGTTCCATGAAAAGATATGGGAATTTCGTCAACTCATAAAACGTTCTTCGTAAAATTATCAACATTTAATCAGTTAGCCACATTTTGATATCTTTTAGATAAACCGAGATAATTGAGCTTAAAAGAATAGCCATAAAGGCTGTGATAGGACGCCACCTTAGTCTTGCCGTTTGAGCTCAATTATCTCAGCTCCTGTTTGAGATATAAAAAAGTTGTCAACTGATAAATTATTTCTCATATTATCAACAACATTTTATCAGTTGACAAAAATTTGATATCATTTATAGGAATTGAGATAAATTAGCTCAAAGCTCAACGTCTAGGGTGGGGTCTATTAAAGCATTTACGGTATTACGGTAGTTAAGACAGATTTTTTTCAAAATTTGAAAAATATTAATCTAATGCTAATAAATCAAAAAACTCACTCTTCTCAATGCTTGCTGTTTGGACTGCCAATCATCTGCTAGAAGTTTCCTCTTGTCGATTCTAGTTGACACATTTCTGAAATTTCCCAATTTAAGGTACCGTACACCCTCTAGGACACCTTGCACTTCGCGCTCAATTACCTCGATTTCTGTGAAAGATATCAAAAAATTGTCAACTGATATAATATTGGTGATATTATGGTAAACAATTTATCAGTTGACAACTTTTTGATATCTTGCATAGGAACTGAGATAATTGAAATCAAAGTTCAAGTGTAGGGTATAGGGCTCACCTCTCAACCCCATAAACTGTCGAAAGCGCTTCGATCATTCGAAAGCATTGTCTATGAACCCTTTGAAAACACTTTGCAGTGCATGCTCCAACATGTGTACAGTCCAAATCGAAA</canonical>
            <polymorphic>GTGAGAAAATACGATGAGTTTACGATTGTATTGGGTGGATTATGAATACAAAATAGAGGTGGATAAAGTTACATGTCTCTGAAACTTACCGCTCGTGCCGAACTCGTTTCGGTTTGCTTAAATTGTTTTATTAGAATAGAGGACCATAACTTTGAGTCCAATTATCTCGGTTCCATGAAAAGATATGGGAATTTCGTCAACTCATAAAACGTTCTTCGTAAAATTATCAACATTTAATCAGTTAGCCACATTTTGATATCTTTTAGATAAACCGAGATAATTGAGCTTAAAAGAATAGCCATAAAGGCTGTGATAGGACGCCACCTTAGTCTTGCCGTTTGAGCTCAATTATCTCAGCTCCTGTTTGAGATATAAAAAAGTTGTCAACTGATAAATTATTTCTCATATTATCAACAACATTTTATCAGTTGACAAAAATTTGATATCATTTATAGGAATTGAGATAAATTAGCTCAAAGCTCAACGTCTAGGGTGGGGTRTATTAAAGCATTTACGGTATTACGGTAGTTAAGACAGATTTTTTTCAAAATTTGAAAAATATTAATCTAATGCTAATAAATCAAAAAACTCACTCTTCTCAATGCTTGCTGTTTGGACTGCCAATCATCTGCTAGAAGTTTCCTCTTGTCGATTCTAGTTGACACATTTCTGAAATTTCCCAATTTAAGGTACCGTACACCCTCTAGGACACCTTGCACTTCGCGCTCAATTACCTCGATTTCTGTGAAAGATATCAAAAAATTGTCAACTGATATAATATTGGTGATATTATGGTAAACAATTTATCAGTTGACAACTTTTTGATATCTTGCATAGGAACTGAGATAATTGAAATCAAAGTTCAAGTGTAGGGTATAGGGCTCACCTCTCAACCCCATAAACTGTCGAAAGCGCTTCGATCATTCGAAAGCATTGTCTATGAACCCTTTGAAAACACTTTGCAGTGCATGCTCCAACATGTGTACAGTCCAAATCGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTTTTATTAGAATAGAGGACCAT</pcr_primer_p1>
		<pcr_primer_p2>GCATTGAGAAGAGTGAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>483</pcr_amplicon_size>
		<canonical_amplicon>TTGTTTTATTAGAATAGAGGACCATAACTTTGAGTCCAATTATCTCGGTTCCATGAAAAGATATGGGAATTTCGTCAACTCATAAAACGTTCTTCGTAAAATTATCAACATTTAATCAGTTAGCCACATTTTGATATCTTTTAGATAAACCGAGATAATTGAGCTTAAAAGAATAGCCATAAAGGCTGTGATAGGACGCCACCTTAGTCTTGCCGTTTGAGCTCAATTATCTCAGCTCCTGTTTGAGATATAAAAAAGTTGTCAACTGATAAATTATTTCTCATATTATCAACAACATTTTATCAGTTGACAAAAATTTGATATCATTTATAGGAATTGAGATAAATTAGCTCAAAGCTCAACGTCTAGGGTGGGGTCTATTAAAGCATTTACGGTATTACGGTAGTTAAGACAGATTTTTTTCAAAATTTGAAAAATATTAATCTAATGCTAATAAATCAAAAAACTCACTCTTCTCAATGC</canonical_amplicon>
		<polymorphic_amplicon>TTGTTTTATTAGAATAGAGGACCATAACTTTGAGTCCAATTATCTCGGTTCCATGAAAAGATATGGGAATTTCGTCAACTCATAAAACGTTCTTCGTAAAATTATCAACATTTAATCAGTTAGCCACATTTTGATATCTTTTAGATAAACCGAGATAATTGAGCTTAAAAGAATAGCCATAAAGGCTGTGATAGGACGCCACCTTAGTCTTGCCGTTTGAGCTCAATTATCTCAGCTCCTGTTTGAGATATAAAAAAGTTGTCAACTGATAAATTATTTCTCATATTATCAACAACATTTTATCAGTTGACAAAAATTTGATATCATTTATAGGAATTGAGATAAATTAGCTCAAAGCTCAACGTCTAGGGTGGGGTRTATTAAAGCATTTACGGTATTACGGTAGTTAAGACAGATTTTTTTCAAAATTTGAAAAATATTAATCTAATGCTAATAAATCAAAAAACTCACTCTTCTCAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30510</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>100903</contig_pos>
        <strand></strand>
        <context>CGGTAGTTAA[G/A]ACAGATTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AACGTCTAGGGTGGGGTCTATTAAAGCATTTACGGTATTACGGTAGTTAA</left_flank>
        <right_flank>ACAGATTTTTTTCAAAATTTGAAAAATATTAATCTAATGCTAATAAATCA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGGATTATGAATACAAAATAGAGGTGGATAAAGTTACATGTCTCTGAAACTTACCGCTCGTGCCGAACTCGTTTCGGTTTGCTTAAATTGTTTTATTAGAATAGAGGACCATAACTTTGAGTCCAATTATCTCGGTTCCATGAAAAGATATGGGAATTTCGTCAACTCATAAAACGTTCTTCGTAAAATTATCAACATTTAATCAGTTAGCCACATTTTGATATCTTTTAGATAAACCGAGATAATTGAGCTTAAAAGAATAGCCATAAAGGCTGTGATAGGACGCCACCTTAGTCTTGCCGTTTGAGCTCAATTATCTCAGCTCCTGTTTGAGATATAAAAAAGTTGTCAACTGATAAATTATTTCTCATATTATCAACAACATTTTATCAGTTGACAAAAATTTGATATCATTTATAGGAATTGAGATAAATTAGCTCAAAGCTCAACGTCTAGGGTGGGGTCTATTAAAGCATTTACGGTATTACGGTAGTTAAGACAGATTTTTTTCAAAATTTGAAAAATATTAATCTAATGCTAATAAATCAAAAAACTCACTCTTCTCAATGCTTGCTGTTTGGACTGCCAATCATCTGCTAGAAGTTTCCTCTTGTCGATTCTAGTTGACACATTTCTGAAATTTCCCAATTTAAGGTACCGTACACCCTCTAGGACACCTTGCACTTCGCGCTCAATTACCTCGATTTCTGTGAAAGATATCAAAAAATTGTCAACTGATATAATATTGGTGATATTATGGTAAACAATTTATCAGTTGACAACTTTTTGATATCTTGCATAGGAACTGAGATAATTGAAATCAAAGTTCAAGTGTAGGGTATAGGGCTCACCTCTCAACCCCATAAACTGTCGAAAGCGCTTCGATCATTCGAAAGCATTGTCTATGAACCCTTTGAAAACACTTTGCAGTGCATGCTCCAACATGTGTACAGTCCAAATCGAAAGAGTTGGAAAATTTGATAAGGACCTTGATCCAT</canonical>
            <polymorphic>GGTGGATTATGAATACAAAATAGAGGTGGATAAAGTTACATGTCTCTGAAACTTACCGCTCGTGCCGAACTCGTTTCGGTTTGCTTAAATTGTTTTATTAGAATAGAGGACCATAACTTTGAGTCCAATTATCTCGGTTCCATGAAAAGATATGGGAATTTCGTCAACTCATAAAACGTTCTTCGTAAAATTATCAACATTTAATCAGTTAGCCACATTTTGATATCTTTTAGATAAACCGAGATAATTGAGCTTAAAAGAATAGCCATAAAGGCTGTGATAGGACGCCACCTTAGTCTTGCCGTTTGAGCTCAATTATCTCAGCTCCTGTTTGAGATATAAAAAAGTTGTCAACTGATAAATTATTTCTCATATTATCAACAACATTTTATCAGTTGACAAAAATTTGATATCATTTATAGGAATTGAGATAAATTAGCTCAAAGCTCAACGTCTAGGGTGGGGTCTATTAAAGCATTTACGGTATTACGGTAGTTAARACAGATTTTTTTCAAAATTTGAAAAATATTAATCTAATGCTAATAAATCAAAAAACTCACTCTTCTCAATGCTTGCTGTTTGGACTGCCAATCATCTGCTAGAAGTTTCCTCTTGTCGATTCTAGTTGACACATTTCTGAAATTTCCCAATTTAAGGTACCGTACACCCTCTAGGACACCTTGCACTTCGCGCTCAATTACCTCGATTTCTGTGAAAGATATCAAAAAATTGTCAACTGATATAATATTGGTGATATTATGGTAAACAATTTATCAGTTGACAACTTTTTGATATCTTGCATAGGAACTGAGATAATTGAAATCAAAGTTCAAGTGTAGGGTATAGGGCTCACCTCTCAACCCCATAAACTGTCGAAAGCGCTTCGATCATTCGAAAGCATTGTCTATGAACCCTTTGAAAACACTTTGCAGTGCATGCTCCAACATGTGTACAGTCCAAATCGAAAGAGTTGGAAAATTTGATAAGGACCTTGATCCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTTTTATTAGAATAGAGGACCAT</pcr_primer_p1>
		<pcr_primer_p2>GCATTGAGAAGAGTGAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>483</pcr_amplicon_size>
		<canonical_amplicon>TTGTTTTATTAGAATAGAGGACCATAACTTTGAGTCCAATTATCTCGGTTCCATGAAAAGATATGGGAATTTCGTCAACTCATAAAACGTTCTTCGTAAAATTATCAACATTTAATCAGTTAGCCACATTTTGATATCTTTTAGATAAACCGAGATAATTGAGCTTAAAAGAATAGCCATAAAGGCTGTGATAGGACGCCACCTTAGTCTTGCCGTTTGAGCTCAATTATCTCAGCTCCTGTTTGAGATATAAAAAAGTTGTCAACTGATAAATTATTTCTCATATTATCAACAACATTTTATCAGTTGACAAAAATTTGATATCATTTATAGGAATTGAGATAAATTAGCTCAAAGCTCAACGTCTAGGGTGGGGTCTATTAAAGCATTTACGGTATTACGGTAGTTAAGACAGATTTTTTTCAAAATTTGAAAAATATTAATCTAATGCTAATAAATCAAAAAACTCACTCTTCTCAATGC</canonical_amplicon>
		<polymorphic_amplicon>TTGTTTTATTAGAATAGAGGACCATAACTTTGAGTCCAATTATCTCGGTTCCATGAAAAGATATGGGAATTTCGTCAACTCATAAAACGTTCTTCGTAAAATTATCAACATTTAATCAGTTAGCCACATTTTGATATCTTTTAGATAAACCGAGATAATTGAGCTTAAAAGAATAGCCATAAAGGCTGTGATAGGACGCCACCTTAGTCTTGCCGTTTGAGCTCAATTATCTCAGCTCCTGTTTGAGATATAAAAAAGTTGTCAACTGATAAATTATTTCTCATATTATCAACAACATTTTATCAGTTGACAAAAATTTGATATCATTTATAGGAATTGAGATAAATTAGCTCAAAGCTCAACGTCTAGGGTGGGGTCTATTAAAGCATTTACGGTATTACGGTAGTTAARACAGATTTTTTTCAAAATTTGAAAAATATTAATCTAATGCTAATAAATCAAAAAACTCACTCTTCTCAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30511</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>112345</contig_pos>
        <strand></strand>
        <context>cactaagaaa[G/T]attcycacta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGATTCTCACTAAGTAAGATTCTCACTAAGAAATATTCTCACTAAGAAA</left_flank>
        <right_flank>ATTCCCACTAAGAACGATTCTCACTAAGAATAGTCCTTATGAAGAAAGCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAAAAAAGAAAGGCGTCGAGTTTTGAGATGGGATTATATAAAATTTTAGTGGTGGTAGTGCCCGCTGACTTGTTTAGTTTTCTAGCTGGGTTTACTGGAAAAATATGAAGTCATAAGAAAGTTTTTTTTTTTTTTGATTCCTTATGAAAGAAGAATGGGAATTCTAACAGGGAGAGCAAATTTTTCAAATTTAAAGGAGTTGAGAGAACTTATTAGGAGATATCCTCACTAACAAAAATTCTTACTAAAAAAGATTCTCACTTAGAACGAATCTCATTAAGAAAGATCCTCATTAAAGGAGGTGAGACAGCAAAAAGGTTTGAGGGACAGTTTGGGGAATAAAATTCTTATTAGGAACTTTATTAAGATAGATACTCACTAAAAAATATTCTCATTGAGAAGGATTCTCTCTGATAAAGATTCTCACTAATTAAGATTCTCACTAATTAAGATTCTCACTAAGTAAGATTCTCACTAAGAAATATTCTCACTAAGAAAGATTCCCACTAAGAACGATTCTCACTAAGAATAGTCCTTATGAAGAAAGCTCCTTGTTAGGAAAAGTTATTATTAAGAGAGTTCCTCACCAAGAAAAATTCTCAGTAAGAAAGATTCTCACTAAGTCCAAATCCTCCTATGGGGTTCTCTAAAATTATCTAGAATACTTTTTTTTTATGATTTGCGACCTTTTCAGATTTTCAAAACTGATCAACTTACCACACAAGACGCCTCGTGAAGTTTTCCGATTTTGTCGCCCAGAAAGGGACTGCAAATTTTCAAAGAATTATTTTTTGAAATTCTAGAAGCTGCTTACTTTGTCTGTCTCCAAAGAAACGTCTGTATTGGCAGCGGGACCGAGTCGCACTCTCCTTCGCCTTCCTCCTCGGTCCTGGAAAAGATAAATTGTTTATTTAAACTCATGGGATATCAAAAAGCAGTCAACTGCTAAAATAGTCCTGATATTATGATAAACATTCTATCAGTTAAGCACTTCTTGAT</canonical>
            <polymorphic>GCAAAAAAGAAAGGCGTCGAGTTTTGAGATGGGATTATATAAAATTTTAGTGGTGGTAGTGCCCGCTGACTTGTTTAGTTTTCTAGCTGGGTTTACTGGAAAAATATGAAGTCATAAGAAAGTTTTTTTTTTTTTTGATTCCTTATGAAAGAAGAATGGGAATTCTAACAGGGAGAGCAAATTTTTCAAATTTAAAGGAGTTGAGAGAACTTATTAGGAGATATCCTCACTAACAAAAATTCTTACTAAAAAAGATTCTCACTTAGAACGAATCTCATTAAGAAAGATCCTCATTAAAGGAGGTGAGACAGCAAAAAGGTTTGAGGGACAGTTTGGGGAATAAAATTCTTATTAGGAACTTTATTAAGATAGATACTCACTAAAAAATATTCTCATTGAGAAGGATTCTCTCTGATAAAGATTCTCACTAATTAAGATTCTCACTAATTAAGATTCTCACTAAGTAAGATTCTCACTAAGAAATATTCTCACTAAGAAAKATTCCCACTAAGAACGATTCTCACTAAGAATAGTCCTTATGAAGAAAGCTCCTTGTTAGGAAAAGTTATTATTAAGAGAGTTCCTCACCAAGAAAAATTCTCAGTAAGAAAGATTCTCACTAAGTCCAAATCCTCCTATGGGGTTCTCTAAAATTATCTAGAATACTTTTTTTTTATGATTTGCGACCTTTTCAGATTTTCAAAACTGATCAACTTACCACACAAGACGCCTCGTGAAGTTTTCCGATTTTGTCGCCCAGAAAGGGACTGCAAATTTTCAAAGAATTATTTTTTGAAATTCTAGAAGCTGCTTACTTTGTCTGTCTCCAAAGAAACGTCTGTATTGGCAGCGGGACCGAGTCGCACTCTCCTTCGCCTTCCTCCTCGGTCCTGGAAAAGATAAATTGTTTATTTAAACTCATGGGATATCAAAAAGCAGTCAACTGCTAAAATAGTCCTGATATTATGATAAACATTCTATCAGTTAAGCACTTCTTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>246 142 137 134 117 96 32 16 16 16 16 16 16</canonical_bands>
                <polymorphic_bands>246 142 137 134 117 96 48 16 16 16 16 16</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>388 137 134 117 96 32 16 16 16 16 16 16</canonical_bands>
                <polymorphic_bands>388 137 134 117 96 48 16 16 16 16 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGGTTTGAGGGACAGTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTAGAGAACCCCATAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>340</pcr_amplicon_size>
		<canonical_amplicon>AAAGGTTTGAGGGACAGTTTGGGGAATAAAATTCTTATTAGGAACTTTATTAAGATAGATACTCACTAAAAAATATTCTCATTGAGAAGGATTCTCTCTGATAAAGATTCTCACTAATTAAGATTCTCACTAATTAAGATTCTCACTAAGTAAGATTCTCACTAAGAAATATTCTCACTAAGAAAGATTCCCACTAAGAACGATTCTCACTAAGAATAGTCCTTATGAAGAAAGCTCCTTGTTAGGAAAAGTTATTATTAAGAGAGTTCCTCACCAAGAAAAATTCTCAGTAAGAAAGATTCTCACTAAGTCCAAATCCTCCTATGGGGTTCTCTAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAGGTTTGAGGGACAGTTTGGGGAATAAAATTCTTATTAGGAACTTTATTAAGATAGATACTCACTAAAAAATATTCTCATTGAGAAGGATTCTCTCTGATAAAGATTCTCACTAATTAAGATTCTCACTAATTAAGATTCTCACTAAGTAAGATTCTCACTAAGAAATATTCTCACTAAGAAAKATTCCCACTAAGAACGATTCTCACTAAGAATAGTCCTTATGAAGAAAGCTCCTTGTTAGGAAAAGTTATTATTAAGAGAGTTCCTCACCAAGAAAAATTCTCAGTAAGAAAGATTCTCACTAAGTCCAAATCCTCCTATGGGGTTCTCTAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30512</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>112350</contig_pos>
        <strand></strand>
        <context>agaaakattc[C/T]cactaagaac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCACTAAGTAAGATTCTCACTAAGAAATATTCTCACTAAGAAAGATTC</left_flank>
        <right_flank>CACTAAGAACGATTCTCACTAAGAATAGTCCTTATGAAGAAAGCTCCTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGAAAGGCGTCGAGTTTTGAGATGGGATTATATAAAATTTTAGTGGTGGTAGTGCCCGCTGACTTGTTTAGTTTTCTAGCTGGGTTTACTGGAAAAATATGAAGTCATAAGAAAGTTTTTTTTTTTTTTGATTCCTTATGAAAGAAGAATGGGAATTCTAACAGGGAGAGCAAATTTTTCAAATTTAAAGGAGTTGAGAGAACTTATTAGGAGATATCCTCACTAACAAAAATTCTTACTAAAAAAGATTCTCACTTAGAACGAATCTCATTAAGAAAGATCCTCATTAAAGGAGGTGAGACAGCAAAAAGGTTTGAGGGACAGTTTGGGGAATAAAATTCTTATTAGGAACTTTATTAAGATAGATACTCACTAAAAAATATTCTCATTGAGAAGGATTCTCTCTGATAAAGATTCTCACTAATTAAGATTCTCACTAATTAAGATTCTCACTAAGTAAGATTCTCACTAAGAAATATTCTCACTAAGAAAGATTCCCACTAAGAACGATTCTCACTAAGAATAGTCCTTATGAAGAAAGCTCCTTGTTAGGAAAAGTTATTATTAAGAGAGTTCCTCACCAAGAAAAATTCTCAGTAAGAAAGATTCTCACTAAGTCCAAATCCTCCTATGGGGTTCTCTAAAATTATCTAGAATACTTTTTTTTTATGATTTGCGACCTTTTCAGATTTTCAAAACTGATCAACTTACCACACAAGACGCCTCGTGAAGTTTTCCGATTTTGTCGCCCAGAAAGGGACTGCAAATTTTCAAAGAATTATTTTTTGAAATTCTAGAAGCTGCTTACTTTGTCTGTCTCCAAAGAAACGTCTGTATTGGCAGCGGGACCGAGTCGCACTCTCCTTCGCCTTCCTCCTCGGTCCTGGAAAAGATAAATTGTTTATTTAAACTCATGGGATATCAAAAAGCAGTCAACTGCTAAAATAGTCCTGATATTATGATAAACATTCTATCAGTTAAGCACTTCTTGATACCTC</canonical>
            <polymorphic>AAAGAAAGGCGTCGAGTTTTGAGATGGGATTATATAAAATTTTAGTGGTGGTAGTGCCCGCTGACTTGTTTAGTTTTCTAGCTGGGTTTACTGGAAAAATATGAAGTCATAAGAAAGTTTTTTTTTTTTTTGATTCCTTATGAAAGAAGAATGGGAATTCTAACAGGGAGAGCAAATTTTTCAAATTTAAAGGAGTTGAGAGAACTTATTAGGAGATATCCTCACTAACAAAAATTCTTACTAAAAAAGATTCTCACTTAGAACGAATCTCATTAAGAAAGATCCTCATTAAAGGAGGTGAGACAGCAAAAAGGTTTGAGGGACAGTTTGGGGAATAAAATTCTTATTAGGAACTTTATTAAGATAGATACTCACTAAAAAATATTCTCATTGAGAAGGATTCTCTCTGATAAAGATTCTCACTAATTAAGATTCTCACTAATTAAGATTCTCACTAAGTAAGATTCTCACTAAGAAATATTCTCACTAAGAAAGATTCYCACTAAGAACGATTCTCACTAAGAATAGTCCTTATGAAGAAAGCTCCTTGTTAGGAAAAGTTATTATTAAGAGAGTTCCTCACCAAGAAAAATTCTCAGTAAGAAAGATTCTCACTAAGTCCAAATCCTCCTATGGGGTTCTCTAAAATTATCTAGAATACTTTTTTTTTATGATTTGCGACCTTTTCAGATTTTCAAAACTGATCAACTTACCACACAAGACGCCTCGTGAAGTTTTCCGATTTTGTCGCCCAGAAAGGGACTGCAAATTTTCAAAGAATTATTTTTTGAAATTCTAGAAGCTGCTTACTTTGTCTGTCTCCAAAGAAACGTCTGTATTGGCAGCGGGACCGAGTCGCACTCTCCTTCGCCTTCCTCCTCGGTCCTGGAAAAGATAAATTGTTTATTTAAACTCATGGGATATCAAAAAGCAGTCAACTGCTAAAATAGTCCTGATATTATGATAAACATTCTATCAGTTAAGCACTTCTTGATACCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGGTTTGAGGGACAGTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTAGAGAACCCCATAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>340</pcr_amplicon_size>
		<canonical_amplicon>AAAGGTTTGAGGGACAGTTTGGGGAATAAAATTCTTATTAGGAACTTTATTAAGATAGATACTCACTAAAAAATATTCTCATTGAGAAGGATTCTCTCTGATAAAGATTCTCACTAATTAAGATTCTCACTAATTAAGATTCTCACTAAGTAAGATTCTCACTAAGAAATATTCTCACTAAGAAAGATTCCCACTAAGAACGATTCTCACTAAGAATAGTCCTTATGAAGAAAGCTCCTTGTTAGGAAAAGTTATTATTAAGAGAGTTCCTCACCAAGAAAAATTCTCAGTAAGAAAGATTCTCACTAAGTCCAAATCCTCCTATGGGGTTCTCTAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAGGTTTGAGGGACAGTTTGGGGAATAAAATTCTTATTAGGAACTTTATTAAGATAGATACTCACTAAAAAATATTCTCATTGAGAAGGATTCTCTCTGATAAAGATTCTCACTAATTAAGATTCTCACTAATTAAGATTCTCACTAAGTAAGATTCTCACTAAGAAATATTCTCACTAAGAAAGATTCYCACTAAGAACGATTCTCACTAAGAATAGTCCTTATGAAGAAAGCTCCTTGTTAGGAAAAGTTATTATTAAGAGAGTTCCTCACCAAGAAAAATTCTCAGTAAGAAAGATTCTCACTAAGTCCAAATCCTCCTATGGGGTTCTCTAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30513</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>116604</contig_pos>
        <strand></strand>
        <context>gtaatagaag[A/C]acccttacac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAAAAATCTCATGTATCCATCTTCACATACCGTAATACCTGTAATAGAAG</left_flank>
        <right_flank>ACCCTTACACTGTCAAGTCTGAGCTCGATTATCTCGGTTTCCATGAGAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGGTTCCTGTTAAAGGAAATGAGAAAGTTGTCAACTGATAAATTGCTTATTATAACATCACAAAGACTGTATTAGTTGACACTTTTTTGATACCCTTCACAGAAACCGAGATATATGGGCTCGAAGTGGATGGTTTTGAGAGAAGGATATTTTAATTAAGGTTTTACGGTAATTATTTTCGAAACTACTAGGATTTATAAAAAATTAGCAGTGATAGGACAAATCTTGAACATTAGGAAAGTGAATTAAAAACGGAAGAAAACGATTTCAGGCATATTTAAGGAATTAGGGTCTACAAGAGATAAGTTCATGGGGAATGAAGACCACATCTTGGAATTTATGTCAGATGAAAAAAGCTAGAAGACATGAAACAAATAAACCAAGACATCTATCATTAGAAGTTAAGGAGTTGAACAATCAAGTGAAAAAATAATACCAGCTGAGCTTTAAAAATCTCATGTATCCATCTTCACATACCGTAATACCTGTAATAGAAGAACCCTTACACTGTCAAGTCTGAGCTCGATTATCTCGGTTTCCATGAGAGATATCAAAAATTAGTCGACTAATAAAATATTGGTGACGCTATTATAAACAGTTCATCAGTTGACCACTTTTTGATATCTTCCACAGAAAATGGGGGGGGGGGGCATTCTATTACAGGGTTTACGGTAATCCTGGTTCTAGTAACTTAGTCCTGATAAGAATTACAAATTTAAACTTCCGACCGAAATCTGTCGTTTTTGGGCAAGTTCCGACCAGAACTTGTCCAAAAGCCCTCCGACAATTCTAACGAAAAGTTACAGGTCGACGGTTCCAGATTACTAAAAACAATAAATGAAAAAATCTACTCACATCAATAAGAACTGTCTAACCTAAACAAAAATCAGGCTCAGAAAAAAAAAAACTGTCTGCCTAAACAAAATCAGGCTCAAGAAACTTTTCGAAACAATTCGAGACACAAAAACGAGAAACGTTGAATAAACTAAAGCAGAATT</canonical>
            <polymorphic>CTCGGTTCCTGTTAAAGGAAATGAGAAAGTTGTCAACTGATAAATTGCTTATTATAACATCACAAAGACTGTATTAGTTGACACTTTTTTGATACCCTTCACAGAAACCGAGATATATGGGCTCGAAGTGGATGGTTTTGAGAGAAGGATATTTTAATTAAGGTTTTACGGTAATTATTTTCGAAACTACTAGGATTTATAAAAAATTAGCAGTGATAGGACAAATCTTGAACATTAGGAAAGTGAATTAAAAACGGAAGAAAACGATTTCAGGCATATTTAAGGAATTAGGGTCTACAAGAGATAAGTTCATGGGGAATGAAGACCACATCTTGGAATTTATGTCAGATGAAAAAAGCTAGAAGACATGAAACAAATAAACCAAGACATCTATCATTAGAAGTTAAGGAGTTGAACAATCAAGTGAAAAAATAATACCAGCTGAGCTTTAAAAATCTCATGTATCCATCTTCACATACCGTAATACCTGTAATAGAAGMACCCTTACACTGTCAAGTCTGAGCTCGATTATCTCGGTTTCCATGAGAGATATCAAAAATTAGTCGACTAATAAAATATTGGTGACGCTATTATAAACAGTTCATCAGTTGACCACTTTTTGATATCTTCCACAGAAAATGGGGGGGGGGGGCATTCTATTACAGGGTTTACGGTAATCCTGGTTCTAGTAACTTAGTCCTGATAAGAATTACAAATTTAAACTTCCGACCGAAATCTGTCGTTTTTGGGCAAGTTCCGACCAGAACTTGTCCAAAAGCCCTCCGACAATTCTAACGAAAAGTTACAGGTCGACGGTTCCAGATTACTAAAAACAATAAATGAAAAAATCTACTCACATCAATAAGAACTGTCTAACCTAAACAAAAATCAGGCTCAGAAAAAAAAAAACTGTCTGCCTAAACAAAATCAGGCTCAAGAAACTTTTCGAAACAATTCGAGACACAAAAACGAGAAACGTTGAATAAACTAAAGCAGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCTTTAAAAATCTCATGTATCC</pcr_primer_p1>
		<pcr_primer_p2>TTTGTAATTCTTATCAGGACTAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>GAGCTTTAAAAATCTCATGTATCCATCTTCACATACCGTAATACCTGTAATAGAAGAACCCTTACACTGTCAAGTCTGAGCTCGATTATCTCGGTTTCCATGAGAGATATCAAAAATTAGTCGACTAATAAAATATTGGTGACGCTATTATAAACAGTTCATCAGTTGACCACTTTTTGATATCTTCCACAGAAAATGGGGGGGGGGGGCATTCTATTACAGGGTTTACGGTAATCCTGGTTCTAGTAACTTAGTCCTGATAAGAATTACAAA</canonical_amplicon>
		<polymorphic_amplicon>GAGCTTTAAAAATCTCATGTATCCATCTTCACATACCGTAATACCTGTAATAGAAGMACCCTTACACTGTCAAGTCTGAGCTCGATTATCTCGGTTTCCATGAGAGATATCAAAAATTAGTCGACTAATAAAATATTGGTGACGCTATTATAAACAGTTCATCAGTTGACCACTTTTTGATATCTTCCACAGAAAATGGGGGGGGGGGGCATTCTATTACAGGGTTTACGGTAATCCTGGTTCTAGTAACTTAGTCCTGATAAGAATTACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30514</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>122514</contig_pos>
        <strand>+</strand>
        <context>CTAGAAACCG[A/G]AAAAARAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATCATAGTTTTGAAAAAGTAGACATCTTGATTGGTTTCCTAGAAACCG</left_flank>
        <right_flank>AAAAAAAATTACGGTAGGAAGTTTAAATCAGACGAATAAGCCAAATTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGACTATGGTTGTGAATAGGATGGTTGGTGGTGGTGTTGGTGGAGGGTGCTCCTTCTTCTTCAAAAGAAGGGTCAATTCTCTGGAGATACTCCAAGAGCCCGGGAGAGAGAGAGAGAGACGTTGCTCTCCTTCTTATTTCGGGGGGAGGGCGGGAGCACAGAAGCACAGCACAAAAAGTTCCTCTTTTCGTGTGTGCATTGATTTGAGGAGAGGGGAGAGAGAGGGTGTGTCTTCGAAGGGGATGCTTATACTTATTGTGTGCAAAAAATGCAAAAAAAACCGAAAAGAGGAGTCATTTTTTTGGGTTAAAGAGGAGGAGGACGACGACGACACTCTGAGTTTTGGTGGTGACACTGGTCCCCAATTTTTGGCTGTGTGACAAGAGTGACCGTCTAGTTTCTTATAGTTTGAATTGAGATATGAATTAATGGGAATTCCGTGGGGTTCCAATCATAGTTTTGAAAAAGTAGACATCTTGATTGGTTTCCTAGAAACCGAAAAAAAAATTACGGTAGGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCAT</canonical>
            <polymorphic>GTGACTATGGTTGTGAATAGGATGGTTGGTGGTGGTGTTGGTGGAGGGTGCTCCTTCTTCTTCAAAAGAAGGGTCAATTCTCTGGAGATACTCCAAGAGCCCGGGAGAGAGAGAGAGAGACGTTGCTCTCCTTCTTATTTCGGGGGGAGGGCGGGAGCACAGAAGCACAGCACAAAAAGTTCCTCTTTTCGTGTGTGCATTGATTTGAGGAGAGGGGAGAGAGAGGGTGTGTCTTCGAAGGGGATGCTTATACTTATTGTGTGCAAAAAATGCAAAAAAAACCGAAAAGAGGAGTCATTTTTTTGGGTTAAAGAGGAGGAGGACGACGACGACACTCTGAGTTTTGGTGGTGACACTGGTCCCCAATTTTTGGCTGTGTGACAAGAGTGACCGTCTAGTTTCTTATAGTTTGAATTGAGATATGAATTAATGGGAATTCCGTGGGGTTCCAATCATAGTTTTGAAAAAGTAGACATCTTGATTGGTTTCCTAGAAACCGRAAAAAAAATTACGGTAGGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGGTTCCAATCATAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCCTAGTTTGGAACTATTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>693</pcr_amplicon_size>
		<canonical_amplicon>GGGGTTCCAATCATAGTTTTGAAAAAGTAGACATCTTGATTGGTTTCCTAGAAACCGAAAAAAAAATTACGGTAGGAAGTT</canonical_amplicon>
		<polymorphic_amplicon>GGGGTTCCAATCATAGTTTTGAAAAAGTAGACATCTTGATTGGTTTCCTAGAAACCGRAAAAAAAATTACGGTAGGAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30515</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>122520</contig_pos>
        <strand>+</strand>
        <context>ACCGRAAAAA[A/G]AATTACGGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGTTTTGAAAAAGTAGACATCTTGATTGGTTTCCTAGAAACCGAAAAAA</left_flank>
        <right_flank>AATTACGGTAGGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGTTGTGAATAGGATGGTTGGTGGTGGTGTTGGTGGAGGGTGCTCCTTCTTCTTCAAAAGAAGGGTCAATTCTCTGGAGATACTCCAAGAGCCCGGGAGAGAGAGAGAGAGACGTTGCTCTCCTTCTTATTTCGGGGGGAGGGCGGGAGCACAGAAGCACAGCACAAAAAGTTCCTCTTTTCGTGTGTGCATTGATTTGAGGAGAGGGGAGAGAGAGGGTGTGTCTTCGAAGGGGATGCTTATACTTATTGTGTGCAAAAAATGCAAAAAAAACCGAAAAGAGGAGTCATTTTTTTGGGTTAAAGAGGAGGAGGACGACGACGACACTCTGAGTTTTGGTGGTGACACTGGTCCCCAATTTTTGGCTGTGTGACAAGAGTGACCGTCTAGTTTCTTATAGTTTGAATTGAGATATGAATTAATGGGAATTCCGTGGGGTTCCAATCATAGTTTTGAAAAAGTAGACATCTTGATTGGTTTCCTAGAAACCGAAAAAAAAATTACGGTAGGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAA</canonical>
            <polymorphic>ATGGTTGTGAATAGGATGGTTGGTGGTGGTGTTGGTGGAGGGTGCTCCTTCTTCTTCAAAAGAAGGGTCAATTCTCTGGAGATACTCCAAGAGCCCGGGAGAGAGAGAGAGAGACGTTGCTCTCCTTCTTATTTCGGGGGGAGGGCGGGAGCACAGAAGCACAGCACAAAAAGTTCCTCTTTTCGTGTGTGCATTGATTTGAGGAGAGGGGAGAGAGAGGGTGTGTCTTCGAAGGGGATGCTTATACTTATTGTGTGCAAAAAATGCAAAAAAAACCGAAAAGAGGAGTCATTTTTTTGGGTTAAAGAGGAGGAGGACGACGACGACACTCTGAGTTTTGGTGGTGACACTGGTCCCCAATTTTTGGCTGTGTGACAAGAGTGACCGTCTAGTTTCTTATAGTTTGAATTGAGATATGAATTAATGGGAATTCCGTGGGGTTCCAATCATAGTTTTGAAAAAGTAGACATCTTGATTGGTTTCCTAGAAACCGAAAAAARAATTACGGTAGGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGGTTCCAATCATAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCCTAGTTTGGAACTATTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>693</pcr_amplicon_size>
		<canonical_amplicon>GGGGTTCCAATCATAGTTTTGAAAAAGTAGACATCTTGATTGGTTTCCTAGAAACCGAAAAAAAAATTACGGTAGGAAGTTTAAATC</canonical_amplicon>
		<polymorphic_amplicon>GGGGTTCCAATCATAGTTTTGAAAAAGTAGACATCTTGATTGGTTTCCTAGAAACCGAAAAAARAATTACGGTAGGAAGTTTAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30516</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>122566</contig_pos>
        <strand>+</strand>
        <context>CAAATTTTGT[A/G]AATAAGACCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAAATTACGGTAGGAAGTTTAAATCAGACGAATAAGCCAAATTTTGT</left_flank>
        <right_flank>AATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTCTTCTTCAAAAGAAGGGTCAATTCTCTGGAGATACTCCAAGAGCCCGGGAGAGAGAGAGAGAGACGTTGCTCTCCTTCTTATTTCGGGGGGAGGGCGGGAGCACAGAAGCACAGCACAAAAAGTTCCTCTTTTCGTGTGTGCATTGATTTGAGGAGAGGGGAGAGAGAGGGTGTGTCTTCGAAGGGGATGCTTATACTTATTGTGTGCAAAAAATGCAAAAAAAACCGAAAAGAGGAGTCATTTTTTTGGGTTAAAGAGGAGGAGGACGACGACGACACTCTGAGTTTTGGTGGTGACACTGGTCCCCAATTTTTGGCTGTGTGACAAGAGTGACCGTCTAGTTTCTTATAGTTTGAATTGAGATATGAATTAATGGGAATTCCGTGGGGTTCCAATCATAGTTTTGAAAAAGTAGACATCTTGATTGGTTTCCTAGAAACCGAAAAAAAAATTACGGTAGGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACT</canonical>
            <polymorphic>CCTTCTTCTTCAAAAGAAGGGTCAATTCTCTGGAGATACTCCAAGAGCCCGGGAGAGAGAGAGAGAGACGTTGCTCTCCTTCTTATTTCGGGGGGAGGGCGGGAGCACAGAAGCACAGCACAAAAAGTTCCTCTTTTCGTGTGTGCATTGATTTGAGGAGAGGGGAGAGAGAGGGTGTGTCTTCGAAGGGGATGCTTATACTTATTGTGTGCAAAAAATGCAAAAAAAACCGAAAAGAGGAGTCATTTTTTTGGGTTAAAGAGGAGGAGGACGACGACGACACTCTGAGTTTTGGTGGTGACACTGGTCCCCAATTTTTGGCTGTGTGACAAGAGTGACCGTCTAGTTTCTTATAGTTTGAATTGAGATATGAATTAATGGGAATTCCGTGGGGTTCCAATCATAGTTTTGAAAAAGTAGACATCTTGATTGGTTTCCTAGAAACCGAAAAAAAAATTACGGTAGGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTRAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATCTTGATTGGTTTCCTAGA</pcr_primer_p1>
		<pcr_primer_p2>TCCTAGTTTGGAACTATTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>663</pcr_amplicon_size>
		<canonical_amplicon>ACATCTTGATTGGTTTCCTAGAAACCGAAAAAAAAATTACGGTAGGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGAC</canonical_amplicon>
		<polymorphic_amplicon>ACATCTTGATTGGTTTCCTAGAAACCGAAAAAAAAATTACGGTAGGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTRAATAAGACCTAAGGGTGCTCGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30517</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>122583</contig_pos>
        <strand>+</strand>
        <context>ACCTAAGGGT[A/G]CTCGACACCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGT</left_flank>
        <right_flank>CTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGGTCAATTCTCTGGAGATACTCCAAGAGCCCGGGAGAGAGAGAGAGAGACGTTGCTCTCCTTCTTATTTCGGGGGGAGGGCGGGAGCACAGAAGCACAGCACAAAAAGTTCCTCTTTTCGTGTGTGCATTGATTTGAGGAGAGGGGAGAGAGAGGGTGTGTCTTCGAAGGGGATGCTTATACTTATTGTGTGCAAAAAATGCAAAAAAAACCGAAAAGAGGAGTCATTTTTTTGGGTTAAAGAGGAGGAGGACGACGACGACACTCTGAGTTTTGGTGGTGACACTGGTCCCCAATTTTTGGCTGTGTGACAAGAGTGACCGTCTAGTTTCTTATAGTTTGAATTGAGATATGAATTAATGGGAATTCCGTGGGGTTCCAATCATAGTTTTGAAAAAGTAGACATCTTGATTGGTTTCCTAGAAACCGAAAAAAAAATTACGGTAGGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTA</canonical>
            <polymorphic>AGGGTCAATTCTCTGGAGATACTCCAAGAGCCCGGGAGAGAGAGAGAGAGACGTTGCTCTCCTTCTTATTTCGGGGGGAGGGCGGGAGCACAGAAGCACAGCACAAAAAGTTCCTCTTTTCGTGTGTGCATTGATTTGAGGAGAGGGGAGAGAGAGGGTGTGTCTTCGAAGGGGATGCTTATACTTATTGTGTGCAAAAAATGCAAAAAAAACCGAAAAGAGGAGTCATTTTTTTGGGTTAAAGAGGAGGAGGACGACGACGACACTCTGAGTTTTGGTGGTGACACTGGTCCCCAATTTTTGGCTGTGTGACAAGAGTGACCGTCTAGTTTCTTATAGTTTGAATTGAGATATGAATTAATGGGAATTCCGTGGGGTTCCAATCATAGTTTTGAAAAAGTAGACATCTTGATTGGTTTCCTAGAAACCGAAAAAAAAATTACGGTAGGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTRCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>486 412 90 12</canonical_bands>
                <polymorphic_bands>898 90 12</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>486 412 58 32 12</canonical_bands>
                <polymorphic_bands>898 58 32 12</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>126 90 71 71 71 68 54 48 32 31 30 24 23 23 22 21 16 16 16 16 16 15 14 10 10 9 9 9 8 7 5 3 3 3 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>133 90 71 71 71 68 54 48 32 31 30 24 23 23 22 21 16 16 16 16 16 15 14 10 10 9 9 9 8 5 3 3 3 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAGTTTAAATCAGACGAATAA</pcr_primer_p1>
		<pcr_primer_p2>TCCTAGTTTGGAACTATTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>619</pcr_amplicon_size>
		<canonical_amplicon>GGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAA</canonical_amplicon>
		<polymorphic_amplicon>GGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTRCTCGACACCGCGTAGCTGGTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30518</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>122667</contig_pos>
        <strand></strand>
        <context>cttactaaga[C/A]agaggaatac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGA</left_flank>
        <right_flank>AGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGCACAGAAGCACAGCACAAAAAGTTCCTCTTTTCGTGTGTGCATTGATTTGAGGAGAGGGGAGAGAGAGGGTGTGTCTTCGAAGGGGATGCTTATACTTATTGTGTGCAAAAAATGCAAAAAAAACCGAAAAGAGGAGTCATTTTTTTGGGTTAAAGAGGAGGAGGACGACGACGACACTCTGAGTTTTGGTGGTGACACTGGTCCCCAATTTTTGGCTGTGTGACAAGAGTGACCGTCTAGTTTCTTATAGTTTGAATTGAGATATGAATTAATGGGAATTCCGTGGGGTTCCAATCATAGTTTTGAAAAAGTAGACATCTTGATTGGTTTCCTAGAAACCGAAAAAAAAATTACGGTAGGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTATCAAAGATTCTCACTAATAGTTCAAATTAAAATTGAAGTAGAAAAAAGAATAGTTCCAAACTAGGAAAGTTAGAATCAATGTTT</canonical>
            <polymorphic>GGAGCACAGAAGCACAGCACAAAAAGTTCCTCTTTTCGTGTGTGCATTGATTTGAGGAGAGGGGAGAGAGAGGGTGTGTCTTCGAAGGGGATGCTTATACTTATTGTGTGCAAAAAATGCAAAAAAAACCGAAAAGAGGAGTCATTTTTTTGGGTTAAAGAGGAGGAGGACGACGACGACACTCTGAGTTTTGGTGGTGACACTGGTCCCCAATTTTTGGCTGTGTGACAAGAGTGACCGTCTAGTTTCTTATAGTTTGAATTGAGATATGAATTAATGGGAATTCCGTGGGGTTCCAATCATAGTTTTGAAAAAGTAGACATCTTGATTGGTTTCCTAGAAACCGAAAAAAAAATTACGGTAGGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGAMAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTATCAAAGATTCTCACTAATAGTTCAAATTAAAATTGAAGTAGAAAAAAGAATAGTTCCAAACTAGGAAAGTTAGAATCAATGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAGTTTAAATCAGACGAATAA</pcr_primer_p1>
		<pcr_primer_p2>TCCTAGTTTGGAACTATTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>619</pcr_amplicon_size>
		<canonical_amplicon>GGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTATCAAAGATTCTCACTAATAGTTCAAATTAAAATTGAAGTAGAAAAAAGAATAGTTCCAAACTAGGA</canonical_amplicon>
		<polymorphic_amplicon>GGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGAMAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTATCAAAGATTCTCACTAATAGTTCAAATTAAAATTGAAGTAGAAAAAAGAATAGTTCCAAACTAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30519</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>122690</contig_pos>
        <strand></strand>
        <context>agaagaatca[A/T]tactaagaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCA</left_flank>
        <right_flank>TACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTCCTCTTTTCGTGTGTGCATTGATTTGAGGAGAGGGGAGAGAGAGGGTGTGTCTTCGAAGGGGATGCTTATACTTATTGTGTGCAAAAAATGCAAAAAAAACCGAAAAGAGGAGTCATTTTTTTGGGTTAAAGAGGAGGAGGACGACGACGACACTCTGAGTTTTGGTGGTGACACTGGTCCCCAATTTTTGGCTGTGTGACAAGAGTGACCGTCTAGTTTCTTATAGTTTGAATTGAGATATGAATTAATGGGAATTCCGTGGGGTTCCAATCATAGTTTTGAAAAAGTAGACATCTTGATTGGTTTCCTAGAAACCGAAAAAAAAATTACGGTAGGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTATCAAAGATTCTCACTAATAGTTCAAATTAAAATTGAAGTAGAAAAAAGAATAGTTCCAAACTAGGAAAGTTAGAATCAATGTTTTGGTGATAAAGATAAGCTAAAAG</canonical>
            <polymorphic>AAGTTCCTCTTTTCGTGTGTGCATTGATTTGAGGAGAGGGGAGAGAGAGGGTGTGTCTTCGAAGGGGATGCTTATACTTATTGTGTGCAAAAAATGCAAAAAAAACCGAAAAGAGGAGTCATTTTTTTGGGTTAAAGAGGAGGAGGACGACGACGACACTCTGAGTTTTGGTGGTGACACTGGTCCCCAATTTTTGGCTGTGTGACAAGAGTGACCGTCTAGTTTCTTATAGTTTGAATTGAGATATGAATTAATGGGAATTCCGTGGGGTTCCAATCATAGTTTTGAAAAAGTAGACATCTTGATTGGTTTCCTAGAAACCGAAAAAAAAATTACGGTAGGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAWTACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTATCAAAGATTCTCACTAATAGTTCAAATTAAAATTGAAGTAGAAAAAAGAATAGTTCCAAACTAGGAAAGTTAGAATCAATGTTTTGGTGATAAAGATAAGCTAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAGTTTAAATCAGACGAATAA</pcr_primer_p1>
		<pcr_primer_p2>TCCTAGTTTGGAACTATTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>619</pcr_amplicon_size>
		<canonical_amplicon>GGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTATCAAAGATTCTCACTAATAGTTCAAATTAAAATTGAAGTAGAAAAAAGAATAGTTCCAAACTAGGA</canonical_amplicon>
		<polymorphic_amplicon>GGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAWTACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTATCAAAGATTCTCACTAATAGTTCAAATTAAAATTGAAGTAGAAAAAAGAATAGTTCCAAACTAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30520</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>122708</contig_pos>
        <strand></strand>
        <context>aaagatcctt[A/T]ctacgcacaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTT</left_flank>
        <right_flank>CTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGCATTGATTTGAGGAGAGGGGAGAGAGAGGGTGTGTCTTCGAAGGGGATGCTTATACTTATTGTGTGCAAAAAATGCAAAAAAAACCGAAAAGAGGAGTCATTTTTTTGGGTTAAAGAGGAGGAGGACGACGACGACACTCTGAGTTTTGGTGGTGACACTGGTCCCCAATTTTTGGCTGTGTGACAAGAGTGACCGTCTAGTTTCTTATAGTTTGAATTGAGATATGAATTAATGGGAATTCCGTGGGGTTCCAATCATAGTTTTGAAAAAGTAGACATCTTGATTGGTTTCCTAGAAACCGAAAAAAAAATTACGGTAGGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTATCAAAGATTCTCACTAATAGTTCAAATTAAAATTGAAGTAGAAAAAAGAATAGTTCCAAACTAGGAAAGTTAGAATCAATGTTTTGGTGATAAAGATAAGCTAAAAGGTGGTTATGACTACTGTA</canonical>
            <polymorphic>GTGCATTGATTTGAGGAGAGGGGAGAGAGAGGGTGTGTCTTCGAAGGGGATGCTTATACTTATTGTGTGCAAAAAATGCAAAAAAAACCGAAAAGAGGAGTCATTTTTTTGGGTTAAAGAGGAGGAGGACGACGACGACACTCTGAGTTTTGGTGGTGACACTGGTCCCCAATTTTTGGCTGTGTGACAAGAGTGACCGTCTAGTTTCTTATAGTTTGAATTGAGATATGAATTAATGGGAATTCCGTGGGGTTCCAATCATAGTTTTGAAAAAGTAGACATCTTGATTGGTTTCCTAGAAACCGAAAAAAAAATTACGGTAGGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTWCTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTATCAAAGATTCTCACTAATAGTTCAAATTAAAATTGAAGTAGAAAAAAGAATAGTTCCAAACTAGGAAAGTTAGAATCAATGTTTTGGTGATAAAGATAAGCTAAAAGGTGGTTATGACTACTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAGTTTAAATCAGACGAATAA</pcr_primer_p1>
		<pcr_primer_p2>TCCTAGTTTGGAACTATTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>619</pcr_amplicon_size>
		<canonical_amplicon>GGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTATCAAAGATTCTCACTAATAGTTCAAATTAAAATTGAAGTAGAAAAAAGAATAGTTCCAAACTAGGA</canonical_amplicon>
		<polymorphic_amplicon>GGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTWCTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTATCAAAGATTCTCACTAATAGTTCAAATTAAAATTGAAGTAGAAAAAAGAATAGTTCCAAACTAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30521</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>122843</contig_pos>
        <strand></strand>
        <context>ctcactataa[A/C]gatcattasa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAA</left_flank>
        <right_flank>GATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACACTCTGAGTTTTGGTGGTGACACTGGTCCCCAATTTTTGGCTGTGTGACAAGAGTGACCGTCTAGTTTCTTATAGTTTGAATTGAGATATGAATTAATGGGAATTCCGTGGGGTTCCAATCATAGTTTTGAAAAAGTAGACATCTTGATTGGTTTCCTAGAAACCGAAAAAAAAATTACGGTAGGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTATCAAAGATTCTCACTAATAGTTCAAATTAAAATTGAAGTAGAAAAAAGAATAGTTCCAAACTAGGAAAGTTAGAATCAATGTTTTGGTGATAAAGATAAGCTAAAAGGTGGTTATGACTACTGTAGCATTTGAAAAAATTGAGAAATCCATAAGAAAAGGACCGTACAGGTCATTAAGTCATACAACAACATATTTTTCAGTTGATTTTCGGCCATTTTAAGGAGTCTGGAGCTCAGATGTCAAATTTCCAATCACTTTG</canonical>
            <polymorphic>CGACACTCTGAGTTTTGGTGGTGACACTGGTCCCCAATTTTTGGCTGTGTGACAAGAGTGACCGTCTAGTTTCTTATAGTTTGAATTGAGATATGAATTAATGGGAATTCCGTGGGGTTCCAATCATAGTTTTGAAAAAGTAGACATCTTGATTGGTTTCCTAGAAACCGAAAAAAAAATTACGGTAGGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAMGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTATCAAAGATTCTCACTAATAGTTCAAATTAAAATTGAAGTAGAAAAAAGAATAGTTCCAAACTAGGAAAGTTAGAATCAATGTTTTGGTGATAAAGATAAGCTAAAAGGTGGTTATGACTACTGTAGCATTTGAAAAAATTGAGAAATCCATAAGAAAAGGACCGTACAGGTCATTAAGTCATACAACAACATATTTTTCAGTTGATTTTCGGCCATTTTAAGGAGTCTGGAGCTCAGATGTCAAATTTCCAATCACTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAGTTTAAATCAGACGAATAA</pcr_primer_p1>
		<pcr_primer_p2>TCCTAGTTTGGAACTATTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>619</pcr_amplicon_size>
		<canonical_amplicon>GGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTATCAAAGATTCTCACTAATAGTTCAAATTAAAATTGAAGTAGAAAAAAGAATAGTTCCAAACTAGGA</canonical_amplicon>
		<polymorphic_amplicon>GGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAMGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTATCAAAGATTCTCACTAATAGTTCAAATTAAAATTGAAGTAGAAAAAAGAATAGTTCCAAACTAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30522</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>122852</contig_pos>
        <strand></strand>
        <context>amgatcatta[G/C]aaagcacaat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTA</left_flank>
        <right_flank>AAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTTTTGGTGGTGACACTGGTCCCCAATTTTTGGCTGTGTGACAAGAGTGACCGTCTAGTTTCTTATAGTTTGAATTGAGATATGAATTAATGGGAATTCCGTGGGGTTCCAATCATAGTTTTGAAAAAGTAGACATCTTGATTGGTTTCCTAGAAACCGAAAAAAAAATTACGGTAGGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTATCAAAGATTCTCACTAATAGTTCAAATTAAAATTGAAGTAGAAAAAAGAATAGTTCCAAACTAGGAAAGTTAGAATCAATGTTTTGGTGATAAAGATAAGCTAAAAGGTGGTTATGACTACTGTAGCATTTGAAAAAATTGAGAAATCCATAAGAAAAGGACCGTACAGGTCATTAAGTCATACAACAACATATTTTTCAGTTGATTTTCGGCCATTTTAAGGAGTCTGGAGCTCAGATGTCAAATTTCCAATCACTTTGGTAATTTTG</canonical>
            <polymorphic>GAGTTTTGGTGGTGACACTGGTCCCCAATTTTTGGCTGTGTGACAAGAGTGACCGTCTAGTTTCTTATAGTTTGAATTGAGATATGAATTAATGGGAATTCCGTGGGGTTCCAATCATAGTTTTGAAAAAGTAGACATCTTGATTGGTTTCCTAGAAACCGAAAAAAAAATTACGGTAGGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTASAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTATCAAAGATTCTCACTAATAGTTCAAATTAAAATTGAAGTAGAAAAAAGAATAGTTCCAAACTAGGAAAGTTAGAATCAATGTTTTGGTGATAAAGATAAGCTAAAAGGTGGTTATGACTACTGTAGCATTTGAAAAAATTGAGAAATCCATAAGAAAAGGACCGTACAGGTCATTAAGTCATACAACAACATATTTTTCAGTTGATTTTCGGCCATTTTAAGGAGTCTGGAGCTCAGATGTCAAATTTCCAATCACTTTGGTAATTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAGTTTAAATCAGACGAATAA</pcr_primer_p1>
		<pcr_primer_p2>TCCTAGTTTGGAACTATTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>619</pcr_amplicon_size>
		<canonical_amplicon>GGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTATCAAAGATTCTCACTAATAGTTCAAATTAAAATTGAAGTAGAAAAAAGAATAGTTCCAAACTAGGA</canonical_amplicon>
		<polymorphic_amplicon>GGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTASAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTATCAAAGATTCTCACTAATAGTTCAAATTAAAATTGAAGTAGAAAAAAGAATAGTTCCAAACTAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30523</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>122895</contig_pos>
        <strand></strand>
        <context>ctaagaagga[T/C]cgttactaar</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGA</left_flank>
        <right_flank>CGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAGAGTGACCGTCTAGTTTCTTATAGTTTGAATTGAGATATGAATTAATGGGAATTCCGTGGGGTTCCAATCATAGTTTTGAAAAAGTAGACATCTTGATTGGTTTCCTAGAAACCGAAAAAAAAATTACGGTAGGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTATCAAAGATTCTCACTAATAGTTCAAATTAAAATTGAAGTAGAAAAAAGAATAGTTCCAAACTAGGAAAGTTAGAATCAATGTTTTGGTGATAAAGATAAGCTAAAAGGTGGTTATGACTACTGTAGCATTTGAAAAAATTGAGAAATCCATAAGAAAAGGACCGTACAGGTCATTAAGTCATACAACAACATATTTTTCAGTTGATTTTCGGCCATTTTAAGGAGTCTGGAGCTCAGATGTCAAATTTCCAATCACTTTGGTAATTTTGGAGGATTTAAAACATGCCAGTATTAAAAACTTTGCATTCGTAG</canonical>
            <polymorphic>CAAGAGTGACCGTCTAGTTTCTTATAGTTTGAATTGAGATATGAATTAATGGGAATTCCGTGGGGTTCCAATCATAGTTTTGAAAAAGTAGACATCTTGATTGGTTTCCTAGAAACCGAAAAAAAAATTACGGTAGGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGAYCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTATCAAAGATTCTCACTAATAGTTCAAATTAAAATTGAAGTAGAAAAAAGAATAGTTCCAAACTAGGAAAGTTAGAATCAATGTTTTGGTGATAAAGATAAGCTAAAAGGTGGTTATGACTACTGTAGCATTTGAAAAAATTGAGAAATCCATAAGAAAAGGACCGTACAGGTCATTAAGTCATACAACAACATATTTTTCAGTTGATTTTCGGCCATTTTAAGGAGTCTGGAGCTCAGATGTCAAATTTCCAATCACTTTGGTAATTTTGGAGGATTTAAAACATGCCAGTATTAAAAACTTTGCATTCGTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>339 241 116 111 49 48 32 32 16 16</canonical_bands>
                <polymorphic_bands>339 241 165 111 48 32 32 16 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAGTTTAAATCAGACGAATAA</pcr_primer_p1>
		<pcr_primer_p2>TCCTAGTTTGGAACTATTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>619</pcr_amplicon_size>
		<canonical_amplicon>GGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTATCAAAGATTCTCACTAATAGTTCAAATTAAAATTGAAGTAGAAAAAAGAATAGTTCCAAACTAGGA</canonical_amplicon>
		<polymorphic_amplicon>GGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGAYCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTATCAAAGATTCTCACTAATAGTTCAAATTAAAATTGAAGTAGAAAAAAGAATAGTTCCAAACTAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30524</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>122905</contig_pos>
        <strand></strand>
        <context>ycgttactaa[G/A]aaaratcctt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAA</left_flank>
        <right_flank>AAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTCTAGTTTCTTATAGTTTGAATTGAGATATGAATTAATGGGAATTCCGTGGGGTTCCAATCATAGTTTTGAAAAAGTAGACATCTTGATTGGTTTCCTAGAAACCGAAAAAAAAATTACGGTAGGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTATCAAAGATTCTCACTAATAGTTCAAATTAAAATTGAAGTAGAAAAAAGAATAGTTCCAAACTAGGAAAGTTAGAATCAATGTTTTGGTGATAAAGATAAGCTAAAAGGTGGTTATGACTACTGTAGCATTTGAAAAAATTGAGAAATCCATAAGAAAAGGACCGTACAGGTCATTAAGTCATACAACAACATATTTTTCAGTTGATTTTCGGCCATTTTAAGGAGTCTGGAGCTCAGATGTCAAATTTCCAATCACTTTGGTAATTTTGGAGGATTTAAAACATGCCAGTATTAAAAACTTTGCATTCGTAGAATTTTTGAA</canonical>
            <polymorphic>CGTCTAGTTTCTTATAGTTTGAATTGAGATATGAATTAATGGGAATTCCGTGGGGTTCCAATCATAGTTTTGAAAAAGTAGACATCTTGATTGGTTTCCTAGAAACCGAAAAAAAAATTACGGTAGGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAARAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTATCAAAGATTCTCACTAATAGTTCAAATTAAAATTGAAGTAGAAAAAAGAATAGTTCCAAACTAGGAAAGTTAGAATCAATGTTTTGGTGATAAAGATAAGCTAAAAGGTGGTTATGACTACTGTAGCATTTGAAAAAATTGAGAAATCCATAAGAAAAGGACCGTACAGGTCATTAAGTCATACAACAACATATTTTTCAGTTGATTTTCGGCCATTTTAAGGAGTCTGGAGCTCAGATGTCAAATTTCCAATCACTTTGGTAATTTTGGAGGATTTAAAACATGCCAGTATTAAAAACTTTGCATTCGTAGAATTTTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>251 170 89 84 81 79 54 16 16 16 16 16 16 16 16 16 16 16 16</canonical_bands>
                <polymorphic_bands>251 170 89 84 81 79 54 32 16 16 16 16 16 16 16 16 16 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAGTTTAAATCAGACGAATAA</pcr_primer_p1>
		<pcr_primer_p2>TCCTAGTTTGGAACTATTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>619</pcr_amplicon_size>
		<canonical_amplicon>GGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTATCAAAGATTCTCACTAATAGTTCAAATTAAAATTGAAGTAGAAAAAAGAATAGTTCCAAACTAGGA</canonical_amplicon>
		<polymorphic_amplicon>GGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAARAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTATCAAAGATTCTCACTAATAGTTCAAATTAAAATTGAAGTAGAAAAAAGAATAGTTCCAAACTAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30525</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>122909</contig_pos>
        <strand></strand>
        <context>tactaaraaa[A/G]atccttacta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAA</left_flank>
        <right_flank>ATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGA</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTTTCTTATAGTTTGAATTGAGATATGAATTAATGGGAATTCCGTGGGGTTCCAATCATAGTTTTGAAAAAGTAGACATCTTGATTGGTTTCCTAGAAACCGAAAAAAAAATTACGGTAGGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTATCAAAGATTCTCACTAATAGTTCAAATTAAAATTGAAGTAGAAAAAAGAATAGTTCCAAACTAGGAAAGTTAGAATCAATGTTTTGGTGATAAAGATAAGCTAAAAGGTGGTTATGACTACTGTAGCATTTGAAAAAATTGAGAAATCCATAAGAAAAGGACCGTACAGGTCATTAAGTCATACAACAACATATTTTTCAGTTGATTTTCGGCCATTTTAAGGAGTCTGGAGCTCAGATGTCAAATTTCCAATCACTTTGGTAATTTTGGAGGATTTAAAACATGCCAGTATTAAAAACTTTGCATTCGTAGAATTTTTGAAAATT</canonical>
            <polymorphic>TAGTTTCTTATAGTTTGAATTGAGATATGAATTAATGGGAATTCCGTGGGGTTCCAATCATAGTTTTGAAAAAGTAGACATCTTGATTGGTTTCCTAGAAACCGAAAAAAAAATTACGGTAGGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAARATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTATCAAAGATTCTCACTAATAGTTCAAATTAAAATTGAAGTAGAAAAAAGAATAGTTCCAAACTAGGAAAGTTAGAATCAATGTTTTGGTGATAAAGATAAGCTAAAAGGTGGTTATGACTACTGTAGCATTTGAAAAAATTGAGAAATCCATAAGAAAAGGACCGTACAGGTCATTAAGTCATACAACAACATATTTTTCAGTTGATTTTCGGCCATTTTAAGGAGTCTGGAGCTCAGATGTCAAATTTCCAATCACTTTGGTAATTTTGGAGGATTTAAAACATGCCAGTATTAAAAACTTTGCATTCGTAGAATTTTTGAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAGTTTAAATCAGACGAATAA</pcr_primer_p1>
		<pcr_primer_p2>TCCTAGTTTGGAACTATTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>619</pcr_amplicon_size>
		<canonical_amplicon>GGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAAAATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTATCAAAGATTCTCACTAATAGTTCAAATTAAAATTGAAGTAGAAAAAAGAATAGTTCCAAACTAGGA</canonical_amplicon>
		<polymorphic_amplicon>GGAAGTTTAAATCAGACGAATAAGCCAAATTTTGTAAATAAGACCTAAGGGTGCTCGACACCGCGTAGCTGGTGAATTCTTAATAAGAAAGGTTCTCACTAAGAAAGATCTTCACTAAGAAAGATCCTTACTAAGACAGAGGAATACTGAGAAGAATCAATACTAAGAAAGATCCTTACTACGCACAACCCTCACAATTAAAGATTATCACTAAAGAAAACCATATTACGGAACATTCTCACTAAGAAAAACTCTCACTAAGAATGATTTTCACTAAGAAAGATCCTTACCAAGCACAATCCCTCACTATAAAGATCATTAGAAAGCACAATGGCTCACTATGAAAGGTTCTCACTAAGAAGGATCGTTACTAAGAAARATCCTTACTAAGAAAAACTCTCACTAAGAAAAAAAAACCCTTATTACGGAACATCTTCAATAGGAAAAATTCTTAATAAGAAAAATTCTCACTAAAAAGGATCATTACTAAGGAAGATCCTTACTAAGAAAGTCCATTACTGAGAAAGATCTTTACTGAGCACAAACCTCACTATCAAAGATTCTCACTAATAGTTCAAATTAAAATTGAAGTAGAAAAAAGAATAGTTCCAAACTAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30526</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>124126</contig_pos>
        <strand></strand>
        <context>AAAATAAAAG[C/A]AAAATAggat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CGGATTTGAATATGGTTAGGTCCATCAAAGCTCTGCACCCAAAATAAAAG</left_flank>
        <right_flank>AAAATAGGATATTGGCCAGGTGCTGGTCGGAACTTGCCCAAAATCGGCTC</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAGGCGTGTGTCGCTTGGGTGACAAGTTCTTCTTCTTCTTCGCACTTCTCTCATGATGCTCTTAGTCTGTCGCCGTCGGAGAAGGAGCAAAGTGTTTTTGAAAAGAAGAAGAAGTAGCATAAGGAGGAGTAGGAGTAGAAGAAGAGTGAGTGAAACCGGAAAACAACAACTTTTCACAACGGGAGAATCGGGAGGAGGAGGAGGAGATGCTCGAAAAAAATGCGGAGAAATGAATATATAGATGTGCCGGAGATGTGTAAAGTGGCTGGAAATTTATTTATTTCCAGAGAGAGAGAGGCCTGACTCACAAAGTTTCAAAATCAAAGTTTGGAAAAGGCCTGGTTTATTGACGAGGTTTAATTAAAAGCCAAAGTTGGAAAGATCAAGTTTTGGTGAAATTGGAAATGCCAGTCCTAATTGAAAAAAATAGATGAAGTTCATTTATAACGGATTTGAATATGGTTAGGTCCATCAAAGCTCTGCACCCAAAATAAAAGCAAAATAGGATATTGGCCAGGTGCTGGTCGGAACTTGCCCAAAATCGGCTCTGTAGCGGGCCATGGTCGAGTGATAACGAAAAAAATTCCAGAAAAATCGTCAAACAGAAAAAATCGGGAAAAAATCATCTGGATTAGGACTAATGAACGGTTAGAGTTAGAAAAAGGCCCTAAAGATAAGGATTAGGGCAAAAAATTCGGAGGGTACAATAACTCGGGAGTACAAGGGTGGACAAAGTGATTTAGGGGTACAAAATCCATGATTGGGGGTACAAAACTAAGCCTTTTTCCCGGTATTTTGTACACCCGAACTGATGATTTTGTACCCCTAAATTGCTTTGTACCCCTTTGAACCCCCGACTTTTTGTACCCAATTATTTGCCAAGGATTTGGCTTTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGGATTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGGTTAATGTCACTCTGCGTACAGCGGT</canonical>
            <polymorphic>AGAAGGCGTGTGTCGCTTGGGTGACAAGTTCTTCTTCTTCTTCGCACTTCTCTCATGATGCTCTTAGTCTGTCGCCGTCGGAGAAGGAGCAAAGTGTTTTTGAAAAGAAGAAGAAGTAGCATAAGGAGGAGTAGGAGTAGAAGAAGAGTGAGTGAAACCGGAAAACAACAACTTTTCACAACGGGAGAATCGGGAGGAGGAGGAGGAGATGCTCGAAAAAAATGCGGAGAAATGAATATATAGATGTGCCGGAGATGTGTAAAGTGGCTGGAAATTTATTTATTTCCAGAGAGAGAGAGGCCTGACTCACAAAGTTTCAAAATCAAAGTTTGGAAAAGGCCTGGTTTATTGACGAGGTTTAATTAAAAGCCAAAGTTGGAAAGATCAAGTTTTGGTGAAATTGGAAATGCCAGTCCTAATTGAAAAAAATAGATGAAGTTCATTTATAACGGATTTGAATATGGTTAGGTCCATCAAAGCTCTGCACCCAAAATAAAAGMAAAATAGGATATTGGCCAGGTGCTGGTCGGAACTTGCCCAAAATCGGCTCTGTAGCGGGCCATGGTCGAGTGATAACGAAAAAAATTCCAGAAAAATCGTCAAACAGAAAAAATCGGGAAAAAATCATCTGGATTAGGACTAATGAACGGTTAGAGTTAGAAAAAGGCCCTAAAGATAAGGATTAGGGCAAAAAATTCGGAGGGTACAATAACTCGGGAGTACAAGGGTGGACAAAGTGATTTAGGGGTACAAAATCCATGATTGGGGGTACAAAACTAAGCCTTTTTCCCGGTATTTTGTACACCCGAACTGATGATTTTGTACCCCTAAATTGCTTTGTACCCCTTTGAACCCCCGACTTTTTGTACCCAATTATTTGCCAAGGATTTGGCTTTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGGATTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGGTTAATGTCACTCTGCGTACAGCGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTATAACGGATTTGAATATGGT</pcr_primer_p1>
		<pcr_primer_p2>TTTGCCCTAATCCTTATCTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTATAACGGATTTGAATATGGTTAGGTCCATCAAAGCTCTGCACCCAAAATAAAAGCAAAATAGGATATTGGCCAGGTGCTGGTCGGAACTTGCCCAAAATCGGCTCTGTAGCGGGCCATGGTCGAGTGATAACGAAAAAAATTCCAGAAAAATCGTCAAACAGAAAAAATCGGGAAAAAATCATCTGGATTAGGACTAATGAACGGTTAGAGTTAGAAAAAGGCCCTAAAGATAAGGATTAGGGCAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTATAACGGATTTGAATATGGTTAGGTCCATCAAAGCTCTGCACCCAAAATAAAAGMAAAATAGGATATTGGCCAGGTGCTGGTCGGAACTTGCCCAAAATCGGCTCTGTAGCGGGCCATGGTCGAGTGATAACGAAAAAAATTCCAGAAAAATCGTCAAACAGAAAAAATCGGGAAAAAATCATCTGGATTAGGACTAATGAACGGTTAGAGTTAGAAAAAGGCCCTAAAGATAAGGATTAGGGCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30527</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>124241</contig_pos>
        <strand></strand>
        <context>CAGAAAAAAT[C/T]GGGAAAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCGAGTGATAACGAAAAAAATTCCAGAAAAATCGTCAAACAGAAAAAAT</left_flank>
        <right_flank>GGGAAAAAATCATCTGGATTAGGACTAATGAACGGTTAGAGTTAGAAAAA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAGCATAAGGAGGAGTAGGAGTAGAAGAAGAGTGAGTGAAACCGGAAAACAACAACTTTTCACAACGGGAGAATCGGGAGGAGGAGGAGGAGATGCTCGAAAAAAATGCGGAGAAATGAATATATAGATGTGCCGGAGATGTGTAAAGTGGCTGGAAATTTATTTATTTCCAGAGAGAGAGAGGCCTGACTCACAAAGTTTCAAAATCAAAGTTTGGAAAAGGCCTGGTTTATTGACGAGGTTTAATTAAAAGCCAAAGTTGGAAAGATCAAGTTTTGGTGAAATTGGAAATGCCAGTCCTAATTGAAAAAAATAGATGAAGTTCATTTATAACGGATTTGAATATGGTTAGGTCCATCAAAGCTCTGCACCCAAAATAAAAGCAAAATAGGATATTGGCCAGGTGCTGGTCGGAACTTGCCCAAAATCGGCTCTGTAGCGGGCCATGGTCGAGTGATAACGAAAAAAATTCCAGAAAAATCGTCAAACAGAAAAAATCGGGAAAAAATCATCTGGATTAGGACTAATGAACGGTTAGAGTTAGAAAAAGGCCCTAAAGATAAGGATTAGGGCAAAAAATTCGGAGGGTACAATAACTCGGGAGTACAAGGGTGGACAAAGTGATTTAGGGGTACAAAATCCATGATTGGGGGTACAAAACTAAGCCTTTTTCCCGGTATTTTGTACACCCGAACTGATGATTTTGTACCCCTAAATTGCTTTGTACCCCTTTGAACCCCCGACTTTTTGTACCCAATTATTTGCCAAGGATTTGGCTTTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGGATTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGGTTAATGTCACTCTGCGTACAGCGGTCGTCCTCACCTTTATGTATGCAATCGGGCGTGCGCTTTTTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCGTCAATACTAGTCTCGACAAGTTCAACTCCTCGAGGG</canonical>
            <polymorphic>GTAGCATAAGGAGGAGTAGGAGTAGAAGAAGAGTGAGTGAAACCGGAAAACAACAACTTTTCACAACGGGAGAATCGGGAGGAGGAGGAGGAGATGCTCGAAAAAAATGCGGAGAAATGAATATATAGATGTGCCGGAGATGTGTAAAGTGGCTGGAAATTTATTTATTTCCAGAGAGAGAGAGGCCTGACTCACAAAGTTTCAAAATCAAAGTTTGGAAAAGGCCTGGTTTATTGACGAGGTTTAATTAAAAGCCAAAGTTGGAAAGATCAAGTTTTGGTGAAATTGGAAATGCCAGTCCTAATTGAAAAAAATAGATGAAGTTCATTTATAACGGATTTGAATATGGTTAGGTCCATCAAAGCTCTGCACCCAAAATAAAAGCAAAATAGGATATTGGCCAGGTGCTGGTCGGAACTTGCCCAAAATCGGCTCTGTAGCGGGCCATGGTCGAGTGATAACGAAAAAAATTCCAGAAAAATCGTCAAACAGAAAAAATYGGGAAAAAATCATCTGGATTAGGACTAATGAACGGTTAGAGTTAGAAAAAGGCCCTAAAGATAAGGATTAGGGCAAAAAATTCGGAGGGTACAATAACTCGGGAGTACAAGGGTGGACAAAGTGATTTAGGGGTACAAAATCCATGATTGGGGGTACAAAACTAAGCCTTTTTCCCGGTATTTTGTACACCCGAACTGATGATTTTGTACCCCTAAATTGCTTTGTACCCCTTTGAACCCCCGACTTTTTGTACCCAATTATTTGCCAAGGATTTGGCTTTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGGATTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGGTTAATGTCACTCTGCGTACAGCGGTCGTCCTCACCTTTATGTATGCAATCGGGCGTGCGCTTTTTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCGTCAATACTAGTCTCGACAAGTTCAACTCCTCGAGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>376 302 95 86 76 27 24 14</canonical_bands>
                <polymorphic_bands>376 302 95 86 76 41 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTATAACGGATTTGAATATGGT</pcr_primer_p1>
		<pcr_primer_p2>TTTGCCCTAATCCTTATCTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTATAACGGATTTGAATATGGTTAGGTCCATCAAAGCTCTGCACCCAAAATAAAAGCAAAATAGGATATTGGCCAGGTGCTGGTCGGAACTTGCCCAAAATCGGCTCTGTAGCGGGCCATGGTCGAGTGATAACGAAAAAAATTCCAGAAAAATCGTCAAACAGAAAAAATCGGGAAAAAATCATCTGGATTAGGACTAATGAACGGTTAGAGTTAGAAAAAGGCCCTAAAGATAAGGATTAGGGCAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTATAACGGATTTGAATATGGTTAGGTCCATCAAAGCTCTGCACCCAAAATAAAAGCAAAATAGGATATTGGCCAGGTGCTGGTCGGAACTTGCCCAAAATCGGCTCTGTAGCGGGCCATGGTCGAGTGATAACGAAAAAAATTCCAGAAAAATCGTCAAACAGAAAAAATYGGGAAAAAATCATCTGGATTAGGACTAATGAACGGTTAGAGTTAGAAAAAGGCCCTAAAGATAAGGATTAGGGCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30528</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>124403</contig_pos>
        <strand></strand>
        <context>gggtacaaaa[C/A]taagcctttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GGTGGACAAAGTGATTTAGGGGTACAAAATCCATGATTGGGGGTACAAAA</left_flank>
        <right_flank>TAAGCCTTTTTCCCGGTATTTTGTACACCCGAACTGATGATTTTGTACCC</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTATTTCCAGAGAGAGAGAGGCCTGACTCACAAAGTTTCAAAATCAAAGTTTGGAAAAGGCCTGGTTTATTGACGAGGTTTAATTAAAAGCCAAAGTTGGAAAGATCAAGTTTTGGTGAAATTGGAAATGCCAGTCCTAATTGAAAAAAATAGATGAAGTTCATTTATAACGGATTTGAATATGGTTAGGTCCATCAAAGCTCTGCACCCAAAATAAAAGCAAAATAGGATATTGGCCAGGTGCTGGTCGGAACTTGCCCAAAATCGGCTCTGTAGCGGGCCATGGTCGAGTGATAACGAAAAAAATTCCAGAAAAATCGTCAAACAGAAAAAATCGGGAAAAAATCATCTGGATTAGGACTAATGAACGGTTAGAGTTAGAAAAAGGCCCTAAAGATAAGGATTAGGGCAAAAAATTCGGAGGGTACAATAACTCGGGAGTACAAGGGTGGACAAAGTGATTTAGGGGTACAAAATCCATGATTGGGGGTACAAAACTAAGCCTTTTTCCCGGTATTTTGTACACCCGAACTGATGATTTTGTACCCCTAAATTGCTTTGTACCCCTTTGAACCCCCGACTTTTTGTACCCAATTATTTGCCAAGGATTTGGCTTTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGGATTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGGTTAATGTCACTCTGCGTACAGCGGTCGTCCTCACCTTTATGTATGCAATCGGGCGTGCGCTTTTTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCGTCAATACTAGTCTCGACAAGTTCAACTCCTCGAGGGGCATATTTAAACGGAATTTCGAGAACATTATTTTTTCATGTCCCCCCACCTTTAAGGACAGTCCGCCTAACCTCAGGGGGGGGGGGGTAAAGCCTAGAGGTTGGGGCTTAACCCTAGAGGGTTGAGGCCTAATTGCGTTCCTAGGGGGTACTTCTGAAAATA</canonical>
            <polymorphic>ATTTATTTCCAGAGAGAGAGAGGCCTGACTCACAAAGTTTCAAAATCAAAGTTTGGAAAAGGCCTGGTTTATTGACGAGGTTTAATTAAAAGCCAAAGTTGGAAAGATCAAGTTTTGGTGAAATTGGAAATGCCAGTCCTAATTGAAAAAAATAGATGAAGTTCATTTATAACGGATTTGAATATGGTTAGGTCCATCAAAGCTCTGCACCCAAAATAAAAGCAAAATAGGATATTGGCCAGGTGCTGGTCGGAACTTGCCCAAAATCGGCTCTGTAGCGGGCCATGGTCGAGTGATAACGAAAAAAATTCCAGAAAAATCGTCAAACAGAAAAAATCGGGAAAAAATCATCTGGATTAGGACTAATGAACGGTTAGAGTTAGAAAAAGGCCCTAAAGATAAGGATTAGGGCAAAAAATTCGGAGGGTACAATAACTCGGGAGTACAAGGGTGGACAAAGTGATTTAGGGGTACAAAATCCATGATTGGGGGTACAAAAMTAAGCCTTTTTCCCGGTATTTTGTACACCCGAACTGATGATTTTGTACCCCTAAATTGCTTTGTACCCCTTTGAACCCCCGACTTTTTGTACCCAATTATTTGCCAAGGATTTGGCTTTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGGATTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGGTTAATGTCACTCTGCGTACAGCGGTCGTCCTCACCTTTATGTATGCAATCGGGCGTGCGCTTTTTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCGTCAATACTAGTCTCGACAAGTTCAACTCCTCGAGGGGCATATTTAAACGGAATTTCGAGAACATTATTTTTTCATGTCCCCCCACCTTTAAGGACAGTCCGCCTAACCTCAGGGGGGGGGGGGTAAAGCCTAGAGGTTGGGGCTTAACCCTAGAGGGTTGAGGCCTAATTGCGTTCCTAGGGGGTACTTCTGAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 278 132 90</canonical_bands>
                <polymorphic_bands>778 132 90</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGACTAATGAACGGTTAGAGTT</pcr_primer_p1>
		<pcr_primer_p2>GCAAATAATTGGGTACAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGGACTAATGAACGGTTAGAGTTAGAAAAAGGCCCTAAAGATAAGGATTAGGGCAAAAAATTCGGAGGGTACAATAACTCGGGAGTACAAGGGTGGACAAAGTGATTTAGGGGTACAAAATCCATGATTGGGGGTACAAAACTAAGCCTTTTTCCCGGTATTTTGTACACCCGAACTGATGATTTTGTACCCCTAAATTGCTTTGTACCCCTTTGAACCCCCGACTTTTTGTACCCAATTATTTGC</canonical_amplicon>
		<polymorphic_amplicon>AGGACTAATGAACGGTTAGAGTTAGAAAAAGGCCCTAAAGATAAGGATTAGGGCAAAAAATTCGGAGGGTACAATAACTCGGGAGTACAAGGGTGGACAAAGTGATTTAGGGGTACAAAATCCATGATTGGGGGTACAAAAMTAAGCCTTTTTCCCGGTATTTTGTACACCCGAACTGATGATTTTGTACCCCTAAATTGCTTTGTACCCCTTTGAACCCCCGACTTTTTGTACCCAATTATTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30529</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>124430</contig_pos>
        <strand></strand>
        <context>tattttgtac[A/C]cccgaactga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATCCATGATTGGGGGTACAAAACTAAGCCTTTTTCCCGGTATTTTGTAC</left_flank>
        <right_flank>CCCGAACTGATGATTTTGTACCCCTAAATTGCTTTGTACCCCTTTGAACC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCACAAAGTTTCAAAATCAAAGTTTGGAAAAGGCCTGGTTTATTGACGAGGTTTAATTAAAAGCCAAAGTTGGAAAGATCAAGTTTTGGTGAAATTGGAAATGCCAGTCCTAATTGAAAAAAATAGATGAAGTTCATTTATAACGGATTTGAATATGGTTAGGTCCATCAAAGCTCTGCACCCAAAATAAAAGCAAAATAGGATATTGGCCAGGTGCTGGTCGGAACTTGCCCAAAATCGGCTCTGTAGCGGGCCATGGTCGAGTGATAACGAAAAAAATTCCAGAAAAATCGTCAAACAGAAAAAATCGGGAAAAAATCATCTGGATTAGGACTAATGAACGGTTAGAGTTAGAAAAAGGCCCTAAAGATAAGGATTAGGGCAAAAAATTCGGAGGGTACAATAACTCGGGAGTACAAGGGTGGACAAAGTGATTTAGGGGTACAAAATCCATGATTGGGGGTACAAAACTAAGCCTTTTTCCCGGTATTTTGTACACCCGAACTGATGATTTTGTACCCCTAAATTGCTTTGTACCCCTTTGAACCCCCGACTTTTTGTACCCAATTATTTGCCAAGGATTTGGCTTTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGGATTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGGTTAATGTCACTCTGCGTACAGCGGTCGTCCTCACCTTTATGTATGCAATCGGGCGTGCGCTTTTTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCGTCAATACTAGTCTCGACAAGTTCAACTCCTCGAGGGGCATATTTAAACGGAATTTCGAGAACATTATTTTTTCATGTCCCCCCACCTTTAAGGACAGTCCGCCTAACCTCAGGGGGGGGGGGGTAAAGCCTAGAGGTTGGGGCTTAACCCTAGAGGGTTGAGGCCTAATTGCGTTCCTAGGGGGTACTTCTGAAAATACAGTATTTTTCTCAATTTTTAAAAGAA</canonical>
            <polymorphic>ACTCACAAAGTTTCAAAATCAAAGTTTGGAAAAGGCCTGGTTTATTGACGAGGTTTAATTAAAAGCCAAAGTTGGAAAGATCAAGTTTTGGTGAAATTGGAAATGCCAGTCCTAATTGAAAAAAATAGATGAAGTTCATTTATAACGGATTTGAATATGGTTAGGTCCATCAAAGCTCTGCACCCAAAATAAAAGCAAAATAGGATATTGGCCAGGTGCTGGTCGGAACTTGCCCAAAATCGGCTCTGTAGCGGGCCATGGTCGAGTGATAACGAAAAAAATTCCAGAAAAATCGTCAAACAGAAAAAATCGGGAAAAAATCATCTGGATTAGGACTAATGAACGGTTAGAGTTAGAAAAAGGCCCTAAAGATAAGGATTAGGGCAAAAAATTCGGAGGGTACAATAACTCGGGAGTACAAGGGTGGACAAAGTGATTTAGGGGTACAAAATCCATGATTGGGGGTACAAAACTAAGCCTTTTTCCCGGTATTTTGTACMCCCGAACTGATGATTTTGTACCCCTAAATTGCTTTGTACCCCTTTGAACCCCCGACTTTTTGTACCCAATTATTTGCCAAGGATTTGGCTTTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGGATTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGGTTAATGTCACTCTGCGTACAGCGGTCGTCCTCACCTTTATGTATGCAATCGGGCGTGCGCTTTTTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCGTCAATACTAGTCTCGACAAGTTCAACTCCTCGAGGGGCATATTTAAACGGAATTTCGAGAACATTATTTTTTCATGTCCCCCCACCTTTAAGGACAGTCCGCCTAACCTCAGGGGGGGGGGGGTAAAGCCTAGAGGTTGGGGCTTAACCCTAGAGGGTTGAGGCCTAATTGCGTTCCTAGGGGGTACTTCTGAAAATACAGTATTTTTCTCAATTTTTAAAAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGTACA</site>
                <isoschizomers>
                    <enzyme>AauI</enzyme>
                    <enzyme>Bsp1407I</enzyme>
                    <enzyme>BsrGI</enzyme>
                    <enzyme>SspBI</enzyme>
                </isoschizomers>
                <canonical_bands>495 338 167</canonical_bands>
                <polymorphic_bands>662 338</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>158 141 101 89 88 87 65 56 50 36 24 24 23 21 17 9 6 5</canonical_bands>
                <polymorphic_bands>166 158 141 89 88 87 56 50 36 24 24 23 21 17 9 6 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>426 337 165 72</canonical_bands>
                <polymorphic_bands>426 337 237</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>415 338 167 80</canonical_bands>
                <polymorphic_bands>415 338 247</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGACTAATGAACGGTTAGAGTT</pcr_primer_p1>
		<pcr_primer_p2>GCAAATAATTGGGTACAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGGACTAATGAACGGTTAGAGTTAGAAAAAGGCCCTAAAGATAAGGATTAGGGCAAAAAATTCGGAGGGTACAATAACTCGGGAGTACAAGGGTGGACAAAGTGATTTAGGGGTACAAAATCCATGATTGGGGGTACAAAACTAAGCCTTTTTCCCGGTATTTTGTACACCCGAACTGATGATTTTGTACCCCTAAATTGCTTTGTACCCCTTTGAACCCCCGACTTTTTGTACCCAATTATTTGC</canonical_amplicon>
		<polymorphic_amplicon>AGGACTAATGAACGGTTAGAGTTAGAAAAAGGCCCTAAAGATAAGGATTAGGGCAAAAAATTCGGAGGGTACAATAACTCGGGAGTACAAGGGTGGACAAAGTGATTTAGGGGTACAAAATCCATGATTGGGGGTACAAAACTAAGCCTTTTTCCCGGTATTTTGTACMCCCGAACTGATGATTTTGTACCCCTAAATTGCTTTGTACCCCTTTGAACCCCCGACTTTTTGTACCCAATTATTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30530</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>138803</contig_pos>
        <strand>+</strand>
        <context>ACTATGCTCT[C/T]TAAAAACCAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTACTAGGGCCCCTACAAACCACTACGGTAACTTAAGACCACTATGCTCT</left_flank>
        <right_flank>TAAAAACCACTAGGATCCCTAAAAGCCACTATGGTTGCTATAAACCACTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAAGTATCGAGAAATTTCGAAAATTCCTTCTTTTGTTTACAAGACTAATTTCCGAAACCCCAATCTATGGCGTCTTGTTAAAGATAAGAGATTGTGATGCATCCTTGTTTTTTGTTTTGTTTGTTTTGTTTTGTTTAGTGTGCTCCACTAAATTACTTTGTCCCTATATCAAGACTGTGTGAATCGCAATCAGTCCATTTTGTCGAAAATACGCTCAGCGACCTAAAAAACCACTAGGGTGCTAAACCACTAAGGTTCCTAAAAGCCTCTAGGGTCCCAAAAAACCACTAGTGTCCTTAAATAGGGTCAAAAAACCACGAGAGTCCCAAAAAACCACTAGGGTAAAAAAACCACTAGGCTCGCCAAAGAAACACTAGGGTTACCTAAAATCCACTAGGCTCTCTAAAAACCACTAGGGTACCTGGAAACCACTAGGCTCCCTAAAAATTACTAGGGCCCCTACAAACCACTACGGTAACTTAAGACCACTATGCTCTCTAAAAACCACTAGGATCCCTAAAAGCCACTATGGTTGCTATAAACCACTAGAGTCATTAAAATCAACTATTGTCCTGAAAAGCCGTTAGGGTCAAAAAACCACGAAACTCTCTAAAAACCACTAGGCTCTCTAAAAACCACTAGGGTCCCTAAAAACCACTACGATCCTTAAAAAACACTAAGGTGGCTAAAAACCACTAGGGTCCCTGAAAACTCCTAAGGCCCACCTAAAAACCACTAGGGTACCTGAAAACCACTAGGGTCAAAAAAATCACTAGGGTTCCTAAAAACTCCTAAGGCCTACCAAAAATCCACTAGGGCCAAAAAACCTAAAAACCACAAAAACTACCTAAAAACCACAAAAACTCACCTAACCAAAAACTACTTTATCCAAAATGCTGCCTAGCCCTATAGACCATGTTCTATCGTCTCGAAGCCAAAGATAGGTTTCAAAAACTAGCAATTATGACGTTCTAGAAAGATTGGCCTGCTCTTTCTAA</canonical>
            <polymorphic>TGGAAGTATCGAGAAATTTCGAAAATTCCTTCTTTTGTTTACAAGACTAATTTCCGAAACCCCAATCTATGGCGTCTTGTTAAAGATAAGAGATTGTGATGCATCCTTGTTTTTTGTTTTGTTTGTTTTGTTTTGTTTAGTGTGCTCCACTAAATTACTTTGTCCCTATATCAAGACTGTGTGAATCGCAATCAGTCCATTTTGTCGAAAATACGCTCAGCGACCTAAAAAACCACTAGGGTGCTAAACCACTAAGGTTCCTAAAAGCCTCTAGGGTCCCAAAAAACCACTAGTGTCCTTAAATAGGGTCAAAAAACCACGAGAGTCCCAAAAAACCACTAGGGTAAAAAAACCACTAGGCTCGCCAAAGAAACACTAGGGTTACCTAAAATCCACTAGGCTCTCTAAAAACCACTAGGGTACCTGGAAACCACTAGGCTCCCTAAAAATTACTAGGGCCCCTACAAACCACTACGGTAACTTAAGACCACTATGCTCTYTAAAAACCACTAGGATCCCTAAAAGCCACTATGGTTGCTATAAACCACTAGAGTCATTAAAATCAACTATTGTCCTGAAAAGCCGTTAGGGTCAAAAAACCACGAAACTCTCTAAAAACCACTAGGCTCTCTAAAAACCACTAGGGTCCCTAAAAACCACTACGATCCTTAAAAAACACTAAGGTGGCTAAAAACCACTAGGGTCCCTGAAAACTCCTAAGGCCCACCTAAAAACCACTAGGGTACCTGAAAACCACTAGGGTCAAAAAAATCACTAGGGTTCCTAAAAACTCCTAAGGCCTACCAAAAATCCACTAGGGCCAAAAAACCTAAAAACCACAAAAACTACCTAAAAACCACAAAAACTCACCTAACCAAAAACTACTTTATCCAAAATGCTGCCTAGCCCTATAGACCATGTTCTATCGTCTCGAAGCCAAAGATAGGTTTCAAAAACTAGCAATTATGACGTTCTAGAAAGATTGGCCTGCTCTTTCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAAACACTAGGGTTACCTAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTAGAGAGTTTCGTGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAGAAACACTAGGGTTACCTAAAATCCACTAGGCTCTCTAAAAACCACTAGGGTACCTGGAAACCACTAGGCTCCCTAAAAATTACTAGGGCCCCTACAAACCACTACGGTAACTTAAGACCACTATGCTCTCTAAAAACCACTAGGATCCCTAAAAGCCACTATGGTTGCTATAAACCACTAGAGTCATTAAAATCAACTATTGTCCTGAAAAGCCGTTAGGGTCAAAAAACCACGAAACTCTCTAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAGAAACACTAGGGTTACCTAAAATCCACTAGGCTCTCTAAAAACCACTAGGGTACCTGGAAACCACTAGGCTCCCTAAAAATTACTAGGGCCCCTACAAACCACTACGGTAACTTAAGACCACTATGCTCTYTAAAAACCACTAGGATCCCTAAAAGCCACTATGGTTGCTATAAACCACTAGAGTCATTAAAATCAACTATTGTCCTGAAAAGCCGTTAGGGTCAAAAAACCACGAAACTCTCTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30531</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>161802</contig_pos>
        <strand></strand>
        <context>ttatcgattt[T/C]gaactatttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATGCGCCTTTTAATGACTTTTTTCGATTTTTCTACGAATTTTATCGATTT</left_flank>
        <right_flank>GAACTATTTTTTTTCCACAGAATTCTGACTAATCGCGACAAAATAGGTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATCGCAGAAATTCGAAGAAAAATTGAAATAGACCTTCAAATGGGGCATTTAAAGGAGCACACATGATTTTCTAGCCTATTTTTGTCGTAGTTCGTAGAAAAATCGACAAACATTGGCTAGGAAATAATTTGTTCTTCTTTGAATGCGCCTATAACGATCTTTTTCGATTTTTCCATGAATTTCATCGATTTTGCACAATTTTTGACATGAAAATCCTAAAAATTGGCAAGAAGTTGCATCAAAAACCATGGAAATCATTGAAAACCCCGGTTTATTTGCAATTTTTCGCGATTTGTCGGATTTCTGTGCAAAAAATAGTGTATAAATTGATGAAATTCGTTGAAAAGCCAGGGAAATTTCCTTAAAGGCGCATTTAAAGGAGCACACTCTATTTTCTAGCCTATTTTTGTCGAAATTCGGCTAGAAAATAGAATGTGCTTCTTTGAATGCGCCTTTTAATGACTTTTTTCGATTTTTCTACGAATTTTATCGATTTTGAACTATTTTTTTTCCACAGAATTCTGACTAATCGCGACAAAATAGGTCATTTTTCATTGTTTTAATGTAATTTTTTGCGATTTTTCGGATTTATAAGTAAAAATAGCTCAAAATTACCTAAAAATCGAAAAAAACAGGCCAGAACATAATTACGAAAGTACATGCTCCTTTAAATGCGCACGGTGAATTTTCCGGAACGTTTTTCAAAAAAAATTGTTTCGCGCTCTTTTTATTTTTGGTCGCAATTTCGCTGCGTAGCGACTCAGTAATTCATTTTTTAAGCATGCGCATCGATACTCAGCGCGCTTAACTACAGTATTCGCGTTAGAGCGCATTTACTTTAGAAAGTTCACCGTGAATGCGCCTTTAAGAATTTCGCCACCGGATCTAACAATACGCTCAGTAGCGCGTTGAAATTAGGCCACTAACCCATTCATTGGAAGTAAGAGCGGCGATGAGCAAAACGTGAAGAGCAAGGATTTTGAGAATTCTGATTTTT</canonical>
            <polymorphic>AAAATCGCAGAAATTCGAAGAAAAATTGAAATAGACCTTCAAATGGGGCATTTAAAGGAGCACACATGATTTTCTAGCCTATTTTTGTCGTAGTTCGTAGAAAAATCGACAAACATTGGCTAGGAAATAATTTGTTCTTCTTTGAATGCGCCTATAACGATCTTTTTCGATTTTTCCATGAATTTCATCGATTTTGCACAATTTTTGACATGAAAATCCTAAAAATTGGCAAGAAGTTGCATCAAAAACCATGGAAATCATTGAAAACCCCGGTTTATTTGCAATTTTTCGCGATTTGTCGGATTTCTGTGCAAAAAATAGTGTATAAATTGATGAAATTCGTTGAAAAGCCAGGGAAATTTCCTTAAAGGCGCATTTAAAGGAGCACACTCTATTTTCTAGCCTATTTTTGTCGAAATTCGGCTAGAAAATAGAATGTGCTTCTTTGAATGCGCCTTTTAATGACTTTTTTCGATTTTTCTACGAATTTTATCGATTTYGAACTATTTTTTTTCCACAGAATTCTGACTAATCGCGACAAAATAGGTCATTTTTCATTGTTTTAATGTAATTTTTTGCGATTTTTCGGATTTATAAGTAAAAATAGCTCAAAATTACCTAAAAATCGAAAAAAACAGGCCAGAACATAATTACGAAAGTACATGCTCCTTTAAATGCGCACGGTGAATTTTCCGGAACGTTTTTCAAAAAAAATTGTTTCGCGCTCTTTTTATTTTTGGTCGCAATTTCGCTGCGTAGCGACTCAGTAATTCATTTTTTAAGCATGCGCATCGATACTCAGCGCGCTTAACTACAGTATTCGCGTTAGAGCGCATTTACTTTAGAAAGTTCACCGTGAATGCGCCTTTAAGAATTTCGCCACCGGATCTAACAATACGCTCAGTAGCGCGTTGAAATTAGGCCACTAACCCATTCATTGGAAGTAAGAGCGGCGATGAGCAAAACGTGAAGAGCAAGGATTTTGAGAATTCTGATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAGAATGTGCTTCTTTGAATG</pcr_primer_p1>
		<pcr_primer_p2>GGTTAGTGGCCTAATTTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>502</pcr_amplicon_size>
		<canonical_amplicon>AATAGAATGTGCTTCTTTGAATGCGCCTTTTAATGACTTTTTTCGATTTTTCTACGAATTTTATCGATTTTGAACTATTTTTTTTCCACAGAATTCTGACTAATCGCGACAAAATAGGTCATTTTTCATTGTTTTAATGTAATTTTTTGCGATTTTTCGGATTTATAAGTAAAAATAGCTCAAAATTACCTAAAAATCGAAAAAAACAGGCCAGAACATAATTACGAAAGTACATGCTCCTTTAAATGCGCACGGTGAATTTTCCGGAACGTTTTTCAAAAAAAATTGTTTCGCGCTCTTTTTATTTTTGGTCGCAATTTCGCTGCGTAGCGACTCAGTAATTCATTTTTTAAGCATGCGCATCGATACTCAGCGCGCTTAACTACAGTATTCGCGTTAGAGCGCATTTACTTTAGAAAGTTCACCGTGAATGCGCCTTTAAGAATTTCGCCACCGGATCTAACAATACGCTCAGTAGCGCGTTGAAATTAGGCCACTAACC</canonical_amplicon>
		<polymorphic_amplicon>AATAGAATGTGCTTCTTTGAATGCGCCTTTTAATGACTTTTTTCGATTTTTCTACGAATTTTATCGATTTYGAACTATTTTTTTTCCACAGAATTCTGACTAATCGCGACAAAATAGGTCATTTTTCATTGTTTTAATGTAATTTTTTGCGATTTTTCGGATTTATAAGTAAAAATAGCTCAAAATTACCTAAAAATCGAAAAAAACAGGCCAGAACATAATTACGAAAGTACATGCTCCTTTAAATGCGCACGGTGAATTTTCCGGAACGTTTTTCAAAAAAAATTGTTTCGCGCTCTTTTTATTTTTGGTCGCAATTTCGCTGCGTAGCGACTCAGTAATTCATTTTTTAAGCATGCGCATCGATACTCAGCGCGCTTAACTACAGTATTCGCGTTAGAGCGCATTTACTTTAGAAAGTTCACCGTGAATGCGCCTTTAAGAATTTCGCCACCGGATCTAACAATACGCTCAGTAGCGCGTTGAAATTAGGCCACTAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30532</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>162040</contig_pos>
        <strand></strand>
        <context>tttttatttt[T/C]ggtcgcaatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTTTCCGGAACGTTTTTCAAAAAAAATTGTTTCGCGCTCTTTTTATTTT</left_flank>
        <right_flank>GGTCGCAATTTCGCTGCGTAGCGACTCAGTAATTCATTTTTTAAGCATGC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATCAAAAACCATGGAAATCATTGAAAACCCCGGTTTATTTGCAATTTTTCGCGATTTGTCGGATTTCTGTGCAAAAAATAGTGTATAAATTGATGAAATTCGTTGAAAAGCCAGGGAAATTTCCTTAAAGGCGCATTTAAAGGAGCACACTCTATTTTCTAGCCTATTTTTGTCGAAATTCGGCTAGAAAATAGAATGTGCTTCTTTGAATGCGCCTTTTAATGACTTTTTTCGATTTTTCTACGAATTTTATCGATTTTGAACTATTTTTTTTCCACAGAATTCTGACTAATCGCGACAAAATAGGTCATTTTTCATTGTTTTAATGTAATTTTTTGCGATTTTTCGGATTTATAAGTAAAAATAGCTCAAAATTACCTAAAAATCGAAAAAAACAGGCCAGAACATAATTACGAAAGTACATGCTCCTTTAAATGCGCACGGTGAATTTTCCGGAACGTTTTTCAAAAAAAATTGTTTCGCGCTCTTTTTATTTTTGGTCGCAATTTCGCTGCGTAGCGACTCAGTAATTCATTTTTTAAGCATGCGCATCGATACTCAGCGCGCTTAACTACAGTATTCGCGTTAGAGCGCATTTACTTTAGAAAGTTCACCGTGAATGCGCCTTTAAGAATTTCGCCACCGGATCTAACAATACGCTCAGTAGCGCGTTGAAATTAGGCCACTAACCCATTCATTGGAAGTAAGAGCGGCGATGAGCAAAACGTGAAGAGCAAGGATTTTGAGAATTCTGATTTTTGCCTTCTTTTCCTTCTTCTCGACTTCTTCTCTCATTTCTGATCTCCATTGCACGTCATCAACTCCAGAATCCTCTAATTCCTCTTCAGAAGAGTAGTGTTCATCTGAATCCACTGCTTCTTGAACTACTTCGAATTCCGAAGCTTCAGACTCTTCCACTGAAGTCTCTGACCTGGGTATCTCAGCCAGTGGTGCTATCACTTGATGGCTTGATATAATACTAGATACTGTATCAGATG</canonical>
            <polymorphic>GCATCAAAAACCATGGAAATCATTGAAAACCCCGGTTTATTTGCAATTTTTCGCGATTTGTCGGATTTCTGTGCAAAAAATAGTGTATAAATTGATGAAATTCGTTGAAAAGCCAGGGAAATTTCCTTAAAGGCGCATTTAAAGGAGCACACTCTATTTTCTAGCCTATTTTTGTCGAAATTCGGCTAGAAAATAGAATGTGCTTCTTTGAATGCGCCTTTTAATGACTTTTTTCGATTTTTCTACGAATTTTATCGATTTTGAACTATTTTTTTTCCACAGAATTCTGACTAATCGCGACAAAATAGGTCATTTTTCATTGTTTTAATGTAATTTTTTGCGATTTTTCGGATTTATAAGTAAAAATAGCTCAAAATTACCTAAAAATCGAAAAAAACAGGCCAGAACATAATTACGAAAGTACATGCTCCTTTAAATGCGCACGGTGAATTTTCCGGAACGTTTTTCAAAAAAAATTGTTTCGCGCTCTTTTTATTTTYGGTCGCAATTTCGCTGCGTAGCGACTCAGTAATTCATTTTTTAAGCATGCGCATCGATACTCAGCGCGCTTAACTACAGTATTCGCGTTAGAGCGCATTTACTTTAGAAAGTTCACCGTGAATGCGCCTTTAAGAATTTCGCCACCGGATCTAACAATACGCTCAGTAGCGCGTTGAAATTAGGCCACTAACCCATTCATTGGAAGTAAGAGCGGCGATGAGCAAAACGTGAAGAGCAAGGATTTTGAGAATTCTGATTTTTGCCTTCTTTTCCTTCTTCTCGACTTCTTCTCTCATTTCTGATCTCCATTGCACGTCATCAACTCCAGAATCCTCTAATTCCTCTTCAGAAGAGTAGTGTTCATCTGAATCCACTGCTTCTTGAACTACTTCGAATTCCGAAGCTTCAGACTCTTCCACTGAAGTCTCTGACCTGGGTATCTCAGCCAGTGGTGCTATCACTTGATGGCTTGATATAATACTAGATACTGTATCAGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAGAATGTGCTTCTTTGAATG</pcr_primer_p1>
		<pcr_primer_p2>GGTTAGTGGCCTAATTTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>502</pcr_amplicon_size>
		<canonical_amplicon>AATAGAATGTGCTTCTTTGAATGCGCCTTTTAATGACTTTTTTCGATTTTTCTACGAATTTTATCGATTTTGAACTATTTTTTTTCCACAGAATTCTGACTAATCGCGACAAAATAGGTCATTTTTCATTGTTTTAATGTAATTTTTTGCGATTTTTCGGATTTATAAGTAAAAATAGCTCAAAATTACCTAAAAATCGAAAAAAACAGGCCAGAACATAATTACGAAAGTACATGCTCCTTTAAATGCGCACGGTGAATTTTCCGGAACGTTTTTCAAAAAAAATTGTTTCGCGCTCTTTTTATTTTTGGTCGCAATTTCGCTGCGTAGCGACTCAGTAATTCATTTTTTAAGCATGCGCATCGATACTCAGCGCGCTTAACTACAGTATTCGCGTTAGAGCGCATTTACTTTAGAAAGTTCACCGTGAATGCGCCTTTAAGAATTTCGCCACCGGATCTAACAATACGCTCAGTAGCGCGTTGAAATTAGGCCACTAACC</canonical_amplicon>
		<polymorphic_amplicon>AATAGAATGTGCTTCTTTGAATGCGCCTTTTAATGACTTTTTTCGATTTTTCTACGAATTTTATCGATTTTGAACTATTTTTTTTCCACAGAATTCTGACTAATCGCGACAAAATAGGTCATTTTTCATTGTTTTAATGTAATTTTTTGCGATTTTTCGGATTTATAAGTAAAAATAGCTCAAAATTACCTAAAAATCGAAAAAAACAGGCCAGAACATAATTACGAAAGTACATGCTCCTTTAAATGCGCACGGTGAATTTTCCGGAACGTTTTTCAAAAAAAATTGTTTCGCGCTCTTTTTATTTTYGGTCGCAATTTCGCTGCGTAGCGACTCAGTAATTCATTTTTTAAGCATGCGCATCGATACTCAGCGCGCTTAACTACAGTATTCGCGTTAGAGCGCATTTACTTTAGAAAGTTCACCGTGAATGCGCCTTTAAGAATTTCGCCACCGGATCTAACAATACGCTCAGTAGCGCGTTGAAATTAGGCCACTAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30533</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>162119</contig_pos>
        <strand></strand>
        <context>cttaactaca[G/A]tattcgcgtt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTAATTCATTTTTTAAGCATGCGCATCGATACTCAGCGCGCTTAACTACA</left_flank>
        <right_flank>TATTCGCGTTAGAGCGCATTTACTTTAGAAAGTTCACCGTGAATGCGCCT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGTGTATAAATTGATGAAATTCGTTGAAAAGCCAGGGAAATTTCCTTAAAGGCGCATTTAAAGGAGCACACTCTATTTTCTAGCCTATTTTTGTCGAAATTCGGCTAGAAAATAGAATGTGCTTCTTTGAATGCGCCTTTTAATGACTTTTTTCGATTTTTCTACGAATTTTATCGATTTTGAACTATTTTTTTTCCACAGAATTCTGACTAATCGCGACAAAATAGGTCATTTTTCATTGTTTTAATGTAATTTTTTGCGATTTTTCGGATTTATAAGTAAAAATAGCTCAAAATTACCTAAAAATCGAAAAAAACAGGCCAGAACATAATTACGAAAGTACATGCTCCTTTAAATGCGCACGGTGAATTTTCCGGAACGTTTTTCAAAAAAAATTGTTTCGCGCTCTTTTTATTTTTGGTCGCAATTTCGCTGCGTAGCGACTCAGTAATTCATTTTTTAAGCATGCGCATCGATACTCAGCGCGCTTAACTACAGTATTCGCGTTAGAGCGCATTTACTTTAGAAAGTTCACCGTGAATGCGCCTTTAAGAATTTCGCCACCGGATCTAACAATACGCTCAGTAGCGCGTTGAAATTAGGCCACTAACCCATTCATTGGAAGTAAGAGCGGCGATGAGCAAAACGTGAAGAGCAAGGATTTTGAGAATTCTGATTTTTGCCTTCTTTTCCTTCTTCTCGACTTCTTCTCTCATTTCTGATCTCCATTGCACGTCATCAACTCCAGAATCCTCTAATTCCTCTTCAGAAGAGTAGTGTTCATCTGAATCCACTGCTTCTTGAACTACTTCGAATTCCGAAGCTTCAGACTCTTCCACTGAAGTCTCTGACCTGGGTATCTCAGCCAGTGGTGCTATCACTTGATGGCTTGATATAATACTAGATACTGTATCAGATGGTCCCATTGAAGTTCCGAAATAATAGGAATGCAGGTAGAATAGGGGCATATATGGTGGGCAAGGTTTCTGTCGTAGAAA</canonical>
            <polymorphic>ATAGTGTATAAATTGATGAAATTCGTTGAAAAGCCAGGGAAATTTCCTTAAAGGCGCATTTAAAGGAGCACACTCTATTTTCTAGCCTATTTTTGTCGAAATTCGGCTAGAAAATAGAATGTGCTTCTTTGAATGCGCCTTTTAATGACTTTTTTCGATTTTTCTACGAATTTTATCGATTTTGAACTATTTTTTTTCCACAGAATTCTGACTAATCGCGACAAAATAGGTCATTTTTCATTGTTTTAATGTAATTTTTTGCGATTTTTCGGATTTATAAGTAAAAATAGCTCAAAATTACCTAAAAATCGAAAAAAACAGGCCAGAACATAATTACGAAAGTACATGCTCCTTTAAATGCGCACGGTGAATTTTCCGGAACGTTTTTCAAAAAAAATTGTTTCGCGCTCTTTTTATTTTTGGTCGCAATTTCGCTGCGTAGCGACTCAGTAATTCATTTTTTAAGCATGCGCATCGATACTCAGCGCGCTTAACTACARTATTCGCGTTAGAGCGCATTTACTTTAGAAAGTTCACCGTGAATGCGCCTTTAAGAATTTCGCCACCGGATCTAACAATACGCTCAGTAGCGCGTTGAAATTAGGCCACTAACCCATTCATTGGAAGTAAGAGCGGCGATGAGCAAAACGTGAAGAGCAAGGATTTTGAGAATTCTGATTTTTGCCTTCTTTTCCTTCTTCTCGACTTCTTCTCTCATTTCTGATCTCCATTGCACGTCATCAACTCCAGAATCCTCTAATTCCTCTTCAGAAGAGTAGTGTTCATCTGAATCCACTGCTTCTTGAACTACTTCGAATTCCGAAGCTTCAGACTCTTCCACTGAAGTCTCTGACCTGGGTATCTCAGCCAGTGGTGCTATCACTTGATGGCTTGATATAATACTAGATACTGTATCAGATGGTCCCATTGAAGTTCCGAAATAATAGGAATGCAGGTAGAATAGGGGCATATATGGTGGGCAAGGTTTCTGTCGTAGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>373 366 133 89 39</canonical_bands>
                <polymorphic_bands>373 366 172 89</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAGAATGTGCTTCTTTGAATG</pcr_primer_p1>
		<pcr_primer_p2>GGTTAGTGGCCTAATTTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>502</pcr_amplicon_size>
		<canonical_amplicon>AATAGAATGTGCTTCTTTGAATGCGCCTTTTAATGACTTTTTTCGATTTTTCTACGAATTTTATCGATTTTGAACTATTTTTTTTCCACAGAATTCTGACTAATCGCGACAAAATAGGTCATTTTTCATTGTTTTAATGTAATTTTTTGCGATTTTTCGGATTTATAAGTAAAAATAGCTCAAAATTACCTAAAAATCGAAAAAAACAGGCCAGAACATAATTACGAAAGTACATGCTCCTTTAAATGCGCACGGTGAATTTTCCGGAACGTTTTTCAAAAAAAATTGTTTCGCGCTCTTTTTATTTTTGGTCGCAATTTCGCTGCGTAGCGACTCAGTAATTCATTTTTTAAGCATGCGCATCGATACTCAGCGCGCTTAACTACAGTATTCGCGTTAGAGCGCATTTACTTTAGAAAGTTCACCGTGAATGCGCCTTTAAGAATTTCGCCACCGGATCTAACAATACGCTCAGTAGCGCGTTGAAATTAGGCCACTAACC</canonical_amplicon>
		<polymorphic_amplicon>AATAGAATGTGCTTCTTTGAATGCGCCTTTTAATGACTTTTTTCGATTTTTCTACGAATTTTATCGATTTTGAACTATTTTTTTTCCACAGAATTCTGACTAATCGCGACAAAATAGGTCATTTTTCATTGTTTTAATGTAATTTTTTGCGATTTTTCGGATTTATAAGTAAAAATAGCTCAAAATTACCTAAAAATCGAAAAAAACAGGCCAGAACATAATTACGAAAGTACATGCTCCTTTAAATGCGCACGGTGAATTTTCCGGAACGTTTTTCAAAAAAAATTGTTTCGCGCTCTTTTTATTTTTGGTCGCAATTTCGCTGCGTAGCGACTCAGTAATTCATTTTTTAAGCATGCGCATCGATACTCAGCGCGCTTAACTACARTATTCGCGTTAGAGCGCATTTACTTTAGAAAGTTCACCGTGAATGCGCCTTTAAGAATTTCGCCACCGGATCTAACAATACGCTCAGTAGCGCGTTGAAATTAGGCCACTAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30534</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>162159</contig_pos>
        <strand>+</strand>
        <context>aagttcaccg[A/T]Gaatgcgcct</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTAACTACAGTATTCGCGTTAGAGCGCATTTACTTTAGAAAGTTCACCG</left_flank>
        <right_flank>GAATGCGCCTTTAAGAATTTCGCCACCGGATCTAACAATACGCTCAGTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTCCTTAAAGGCGCATTTAAAGGAGCACACTCTATTTTCTAGCCTATTTTTGTCGAAATTCGGCTAGAAAATAGAATGTGCTTCTTTGAATGCGCCTTTTAATGACTTTTTTCGATTTTTCTACGAATTTTATCGATTTTGAACTATTTTTTTTCCACAGAATTCTGACTAATCGCGACAAAATAGGTCATTTTTCATTGTTTTAATGTAATTTTTTGCGATTTTTCGGATTTATAAGTAAAAATAGCTCAAAATTACCTAAAAATCGAAAAAAACAGGCCAGAACATAATTACGAAAGTACATGCTCCTTTAAATGCGCACGGTGAATTTTCCGGAACGTTTTTCAAAAAAAATTGTTTCGCGCTCTTTTTATTTTTGGTCGCAATTTCGCTGCGTAGCGACTCAGTAATTCATTTTTTAAGCATGCGCATCGATACTCAGCGCGCTTAACTACAGTATTCGCGTTAGAGCGCATTTACTTTAGAAAGTTCACCGTGAATGCGCCTTTAAGAATTTCGCCACCGGATCTAACAATACGCTCAGTAGCGCGTTGAAATTAGGCCACTAACCCATTCATTGGAAGTAAGAGCGGCGATGAGCAAAACGTGAAGAGCAAGGATTTTGAGAATTCTGATTTTTGCCTTCTTTTCCTTCTTCTCGACTTCTTCTCTCATTTCTGATCTCCATTGCACGTCATCAACTCCAGAATCCTCTAATTCCTCTTCAGAAGAGTAGTGTTCATCTGAATCCACTGCTTCTTGAACTACTTCGAATTCCGAAGCTTCAGACTCTTCCACTGAAGTCTCTGACCTGGGTATCTCAGCCAGTGGTGCTATCACTTGATGGCTTGATATAATACTAGATACTGTATCAGATGGTCCCATTGAAGTTCCGAAATAATAGGAATGCAGGTAGAATAGGGGCATATATGGTGGGCAAGGTTTCTGTCGTAGAAATGCTGAGATTGGTCCAAAGGGCTAGTCTTAGCATGGGCGG</canonical>
            <polymorphic>AATTTCCTTAAAGGCGCATTTAAAGGAGCACACTCTATTTTCTAGCCTATTTTTGTCGAAATTCGGCTAGAAAATAGAATGTGCTTCTTTGAATGCGCCTTTTAATGACTTTTTTCGATTTTTCTACGAATTTTATCGATTTTGAACTATTTTTTTTCCACAGAATTCTGACTAATCGCGACAAAATAGGTCATTTTTCATTGTTTTAATGTAATTTTTTGCGATTTTTCGGATTTATAAGTAAAAATAGCTCAAAATTACCTAAAAATCGAAAAAAACAGGCCAGAACATAATTACGAAAGTACATGCTCCTTTAAATGCGCACGGTGAATTTTCCGGAACGTTTTTCAAAAAAAATTGTTTCGCGCTCTTTTTATTTTTGGTCGCAATTTCGCTGCGTAGCGACTCAGTAATTCATTTTTTAAGCATGCGCATCGATACTCAGCGCGCTTAACTACAGTATTCGCGTTAGAGCGCATTTACTTTAGAAAGTTCACCGWGAATGCGCCTTTAAGAATTTCGCCACCGGATCTAACAATACGCTCAGTAGCGCGTTGAAATTAGGCCACTAACCCATTCATTGGAAGTAAGAGCGGCGATGAGCAAAACGTGAAGAGCAAGGATTTTGAGAATTCTGATTTTTGCCTTCTTTTCCTTCTTCTCGACTTCTTCTCTCATTTCTGATCTCCATTGCACGTCATCAACTCCAGAATCCTCTAATTCCTCTTCAGAAGAGTAGTGTTCATCTGAATCCACTGCTTCTTGAACTACTTCGAATTCCGAAGCTTCAGACTCTTCCACTGAAGTCTCTGACCTGGGTATCTCAGCCAGTGGTGCTATCACTTGATGGCTTGATATAATACTAGATACTGTATCAGATGGTCCCATTGAAGTTCCGAAATAATAGGAATGCAGGTAGAATAGGGGCATATATGGTGGGCAAGGTTTCTGTCGTAGAAATGCTGAGATTGGTCCAAAGGGCTAGTCTTAGCATGGGCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>373 326 133 129 39</canonical_bands>
                <polymorphic_bands>412 326 133 129</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>167 164 96 83 77 62 51 46 45 44 43 33 30 24 14 6 5 5 3 2</canonical_bands>
                <polymorphic_bands>167 164 96 83 77 62 51 46 45 44 43 33 30 29 14 6 5 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAGAATGTGCTTCTTTGAATG</pcr_primer_p1>
		<pcr_primer_p2>GGTTAGTGGCCTAATTTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>502</pcr_amplicon_size>
		<canonical_amplicon>AATAGAATGTGCTTCTTTGAATGCGCCTTTTAATGACTTTTTTCGATTTTTCTACGAATTTTATCGATTTTGAACTATTTTTTTTCCACAGAATTCTGACTAATCGCGACAAAATAGGTCATTTTTCATTGTTTTAATGTAATTTTTTGCGATTTTTCGGATTTATAAGTAAAAATAGCTCAAAATTACCTAAAAATCGAAAAAAACAGGCCAGAACATAATTACGAAAGTACATGCTCCTTTAAATGCGCACGGTGAATTTTCCGGAACGTTTTTCAAAAAAAATTGTTTCGCGCTCTTTTTATTTTTGGTCGCAATTTCGCTGCGTAGCGACTCAGTAATTCATTTTTTAAGCATGCGCATCGATACTCAGCGCGCTTAACTACAGTATTCGCGTTAGAGCGCATTTACTTTAGAAAGTTCACCGTGAATGCGCCTTTAAGAATTTCGCCACCGGATCTAACAATACGCTCAGTAGCGCGTTGAAATTAGGCCACTAACC</canonical_amplicon>
		<polymorphic_amplicon>AATAGAATGTGCTTCTTTGAATGCGCCTTTTAATGACTTTTTTCGATTTTTCTACGAATTTTATCGATTTTGAACTATTTTTTTTCCACAGAATTCTGACTAATCGCGACAAAATAGGTCATTTTTCATTGTTTTAATGTAATTTTTTGCGATTTTTCGGATTTATAAGTAAAAATAGCTCAAAATTACCTAAAAATCGAAAAAAACAGGCCAGAACATAATTACGAAAGTACATGCTCCTTTAAATGCGCACGGTGAATTTTCCGGAACGTTTTTCAAAAAAAATTGTTTCGCGCTCTTTTTATTTTTGGTCGCAATTTCGCTGCGTAGCGACTCAGTAATTCATTTTTTAAGCATGCGCATCGATACTCAGCGCGCTTAACTACAGTATTCGCGTTAGAGCGCATTTACTTTAGAAAGTTCACCGWGAATGCGCCTTTAAGAATTTCGCCACCGGATCTAACAATACGCTCAGTAGCGCGTTGAAATTAGGCCACTAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30535</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>163872</contig_pos>
        <strand>+</strand>
        <context>GAAGCCAAAT[C/T]TGCAGCAACY</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCGCTTTCCTGGTTCGATGAAGTTGGTTTCAGATGGAGCGAAGCCAAAT</left_flank>
        <right_flank>TGCAGCAACCTTGATTAAACATGTTCAAATCAAATGTCACTAACCCATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTTGGTATCTTTTGAATGAACCGAGATAATTGAATTTGAAGTTTATGTATTTCCTTCTATTGAACGACACCCTTAACCATCAACTTTGAGCTCAATTATCTCGGTTGCTTTGAAAGATATCAGAAATCTGTTAACTGATAAAATATTGCTCATATTACGATAAATAATTTATTGGTCGACAAGTTTTCGATATCTTTCACAGGAGCTGAGATAATGGAGCTCAAAGTTGATGGTTCGGGTGAGAGCTTTGAGGATCTATTGGAGGAAATACGGTAGTAGGTTCCGAACTTTCAATGATGAAAAAGATTAGCATTTTAGAACGCTCCTCTTTTCTCTTACCTTAGCCAGCGCCGAAATAATCTTCGATCCACCGGATCCTCCGATAACCATCCTAACTTTTTTGGTGACATGATCGAAAATCACCATTGGAGACATACTGCTCATCGGTCGCTTTCCTGGTTCGATGAAGTTGGTTTCAGATGGAGCGAAGCCAAATCTGCAGCAACCTTGATTAAACATGTTCAAATCAAATGTCACTAACCCATTCTCCATTCCTGGGGTACTGAAGTCATCCATCTCGTCGTTCCATAGAATTCCGAACTCGGTGGACTCGACTGCGGCACCGAACCTTAAATGATAGCTGAATTATCTCGATTCCTGTAAAAGATATCAGAAACTTGTCAACTGACAAAATTTTTATCATAATATCAATAATGTTTTATCAGTTGACATACTGTTGCTATCTCACATAGGAACCGAGATAATTGGGCTCAAACCTTACCATCTATTAATAGTTGTTGTCACCGAGACTCCATTCCCATATTGATCCATAGCGGACACGTGGCTGGTACCATGGTCCGGTGGAACGTACTGTGCGATGCCTCCATAGTTCTTTGATGGTTGCGCCTTCTCCTCCATTCTATCAATCACCCATTGAGTGTATTCTGGGGTAGTTAAGTTTTTGGAAAGTTCCAGAGCCCCTTTGACAAAGTCATGG</canonical>
            <polymorphic>CTTTTTGGTATCTTTTGAATGAACCGAGATAATTGAATTTGAAGTTTATGTATTTCCTTCTATTGAACGACACCCTTAACCATCAACTTTGAGCTCAATTATCTCGGTTGCTTTGAAAGATATCAGAAATCTGTTAACTGATAAAATATTGCTCATATTACGATAAATAATTTATTGGTCGACAAGTTTTCGATATCTTTCACAGGAGCTGAGATAATGGAGCTCAAAGTTGATGGTTCGGGTGAGAGCTTTGAGGATCTATTGGAGGAAATACGGTAGTAGGTTCCGAACTTTCAATGATGAAAAAGATTAGCATTTTAGAACGCTCCTCTTTTCTCTTACCTTAGCCAGCGCCGAAATAATCTTCGATCCACCGGATCCTCCGATAACCATCCTAACTTTTTTGGTGACATGATCGAAAATCACCATTGGAGACATACTGCTCATCGGTCGCTTTCCTGGTTCGATGAAGTTGGTTTCAGATGGAGCGAAGCCAAATYTGCAGCAACCTTGATTAAACATGTTCAAATCAAATGTCACTAACCCATTCTCCATTCCTGGGGTACTGAAGTCATCCATCTCGTCGTTCCATAGAATTCCGAACTCGGTGGACTCGACTGCGGCACCGAACCTTAAATGATAGCTGAATTATCTCGATTCCTGTAAAAGATATCAGAAACTTGTCAACTGACAAAATTTTTATCATAATATCAATAATGTTTTATCAGTTGACATACTGTTGCTATCTCACATAGGAACCGAGATAATTGGGCTCAAACCTTACCATCTATTAATAGTTGTTGTCACCGAGACTCCATTCCCATATTGATCCATAGCGGACACGTGGCTGGTACCATGGTCCGGTGGAACGTACTGTGCGATGCCTCCATAGTTCTTTGATGGTTGCGCCTTCTCCTCCATTCTATCAATCACCCATTGAGTGTATTCTGGGGTAGTTAAGTTTTTGGAAAGTTCCAGAGCCCCTTTGACAAAGTCATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTGCAG</site>
                <isoschizomers>
                    <enzyme>BloHII</enzyme>
                    <enzyme>BstMAI</enzyme>
                    <enzyme>PstI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGCATTTTAGAACGCTCCT</pcr_primer_p1>
		<pcr_primer_p2>AATGGAGAATGGGTTAGTGAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTAGCATTTTAGAACGCTCCTCTTTTCTCTTACCTTAGCCAGCGCCGAAATAATCTTCGATCCACCGGATCCTCCGATAACCATCCTAACTTTTTTGGTGACATGATCGAAAATCACCATTGGAGACATACTGCTCATCGGTCGCTTTCCTGGTTCGATGAAGTTGGTTTCAGATGGAGCGAAGCCAAATCTGCAGCAACCTTGATTAAACATGTTCAAATCAAATGTCACTAACCCATTCTCCATT</canonical_amplicon>
		<polymorphic_amplicon>TTAGCATTTTAGAACGCTCCTCTTTTCTCTTACCTTAGCCAGCGCCGAAATAATCTTCGATCCACCGGATCCTCCGATAACCATCCTAACTTTTTTGGTGACATGATCGAAAATCACCATTGGAGACATACTGCTCATCGGTCGCTTTCCTGGTTCGATGAAGTTGGTTTCAGATGGAGCGAAGCCAAATYTGCAGCAACCTTGATTAAACATGTTCAAATCAAATGTCACTAACCCATTCTCCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30536</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>164086</contig_pos>
        <strand></strand>
        <context>cataatatca[A/C]taatgtttta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAAAAGATATCAGAAACTTGTCAACTGACAAAATTTTTATCATAATATCA</left_flank>
        <right_flank>TAATGTTTTATCAGTTGACATACTGTTGCTATCTCACATAGGAACCGAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATGGAGCTCAAAGTTGATGGTTCGGGTGAGAGCTTTGAGGATCTATTGGAGGAAATACGGTAGTAGGTTCCGAACTTTCAATGATGAAAAAGATTAGCATTTTAGAACGCTCCTCTTTTCTCTTACCTTAGCCAGCGCCGAAATAATCTTCGATCCACCGGATCCTCCGATAACCATCCTAACTTTTTTGGTGACATGATCGAAAATCACCATTGGAGACATACTGCTCATCGGTCGCTTTCCTGGTTCGATGAAGTTGGTTTCAGATGGAGCGAAGCCAAATCTGCAGCAACCTTGATTAAACATGTTCAAATCAAATGTCACTAACCCATTCTCCATTCCTGGGGTACTGAAGTCATCCATCTCGTCGTTCCATAGAATTCCGAACTCGGTGGACTCGACTGCGGCACCGAACCTTAAATGATAGCTGAATTATCTCGATTCCTGTAAAAGATATCAGAAACTTGTCAACTGACAAAATTTTTATCATAATATCAATAATGTTTTATCAGTTGACATACTGTTGCTATCTCACATAGGAACCGAGATAATTGGGCTCAAACCTTACCATCTATTAATAGTTGTTGTCACCGAGACTCCATTCCCATATTGATCCATAGCGGACACGTGGCTGGTACCATGGTCCGGTGGAACGTACTGTGCGATGCCTCCATAGTTCTTTGATGGTTGCGCCTTCTCCTCCATTCTATCAATCACCCATTGAGTGTATTCTGGGGTAGTTAAGTTTTTGGAAAGTTCCAGAGCCCCTTTGACAAAGTCATGGTCTCCGAGAAGAGTGCGTTGAGCGTAGGAGAATTTCATGGCTTCAATGTACTTGTGAAGCACTTTAGGGTCTTGATAGATGTCGTCGTGGTGGCCTTCGGGGAAGAGTTCTGGAAATTATATCTCAACTATTAGCTTGGGAGAACTTCTGAAGACTCACTGCTCATCACTGAAATGATCAGCTGTGTAACTCCGAAGGAGCTAGGTGGTGGACC</canonical>
            <polymorphic>TAATGGAGCTCAAAGTTGATGGTTCGGGTGAGAGCTTTGAGGATCTATTGGAGGAAATACGGTAGTAGGTTCCGAACTTTCAATGATGAAAAAGATTAGCATTTTAGAACGCTCCTCTTTTCTCTTACCTTAGCCAGCGCCGAAATAATCTTCGATCCACCGGATCCTCCGATAACCATCCTAACTTTTTTGGTGACATGATCGAAAATCACCATTGGAGACATACTGCTCATCGGTCGCTTTCCTGGTTCGATGAAGTTGGTTTCAGATGGAGCGAAGCCAAATCTGCAGCAACCTTGATTAAACATGTTCAAATCAAATGTCACTAACCCATTCTCCATTCCTGGGGTACTGAAGTCATCCATCTCGTCGTTCCATAGAATTCCGAACTCGGTGGACTCGACTGCGGCACCGAACCTTAAATGATAGCTGAATTATCTCGATTCCTGTAAAAGATATCAGAAACTTGTCAACTGACAAAATTTTTATCATAATATCAMTAATGTTTTATCAGTTGACATACTGTTGCTATCTCACATAGGAACCGAGATAATTGGGCTCAAACCTTACCATCTATTAATAGTTGTTGTCACCGAGACTCCATTCCCATATTGATCCATAGCGGACACGTGGCTGGTACCATGGTCCGGTGGAACGTACTGTGCGATGCCTCCATAGTTCTTTGATGGTTGCGCCTTCTCCTCCATTCTATCAATCACCCATTGAGTGTATTCTGGGGTAGTTAAGTTTTTGGAAAGTTCCAGAGCCCCTTTGACAAAGTCATGGTCTCCGAGAAGAGTGCGTTGAGCGTAGGAGAATTTCATGGCTTCAATGTACTTGTGAAGCACTTTAGGGTCTTGATAGATGTCGTCGTGGTGGCCTTCGGGGAAGAGTTCTGGAAATTATATCTCAACTATTAGCTTGGGAGAACTTCTGAAGACTCACTGCTCATCACTGAAATGATCAGCTGTGTAACTCCGAAGGAGCTAGGTGGTGGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGTACTGAAGTCATCCATCT</pcr_primer_p1>
		<pcr_primer_p2>AGTCTCGGTGACAACAACTATTA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GGGTACTGAAGTCATCCATCTCGTCGTTCCATAGAATTCCGAACTCGGTGGACTCGACTGCGGCACCGAACCTTAAATGATAGCTGAATTATCTCGATTCCTGTAAAAGATATCAGAAACTTGTCAACTGACAAAATTTTTATCATAATATCAATAATGTTTTATCAGTTGACATACTGTTGCTATCTCACATAGGAACCGAGATAATTGGGCTCAAACCTTACCATCTATTAATAGTTGTTGTCACCGAGACT</canonical_amplicon>
		<polymorphic_amplicon>GGGTACTGAAGTCATCCATCTCGTCGTTCCATAGAATTCCGAACTCGGTGGACTCGACTGCGGCACCGAACCTTAAATGATAGCTGAATTATCTCGATTCCTGTAAAAGATATCAGAAACTTGTCAACTGACAAAATTTTTATCATAATATCAMTAATGTTTTATCAGTTGACATACTGTTGCTATCTCACATAGGAACCGAGATAATTGGGCTCAAACCTTACCATCTATTAATAGTTGTTGTCACCGAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30537</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>164441</contig_pos>
        <strand>+</strand>
        <context>GCACTTTAGG[A/G]TCTTGATAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAGCGTAGGAGAATTTCATGGCTTCAATGTACTTGTGAAGCACTTTAGG</left_flank>
        <right_flank>TCTTGATAGATGTCGTCGTGGTGGCCTTCGGGGAAGAGTTCTGGAAATTA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCATCCATCTCGTCGTTCCATAGAATTCCGAACTCGGTGGACTCGACTGCGGCACCGAACCTTAAATGATAGCTGAATTATCTCGATTCCTGTAAAAGATATCAGAAACTTGTCAACTGACAAAATTTTTATCATAATATCAATAATGTTTTATCAGTTGACATACTGTTGCTATCTCACATAGGAACCGAGATAATTGGGCTCAAACCTTACCATCTATTAATAGTTGTTGTCACCGAGACTCCATTCCCATATTGATCCATAGCGGACACGTGGCTGGTACCATGGTCCGGTGGAACGTACTGTGCGATGCCTCCATAGTTCTTTGATGGTTGCGCCTTCTCCTCCATTCTATCAATCACCCATTGAGTGTATTCTGGGGTAGTTAAGTTTTTGGAAAGTTCCAGAGCCCCTTTGACAAAGTCATGGTCTCCGAGAAGAGTGCGTTGAGCGTAGGAGAATTTCATGGCTTCAATGTACTTGTGAAGCACTTTAGGGTCTTGATAGATGTCGTCGTGGTGGCCTTCGGGGAAGAGTTCTGGAAATTATATCTCAACTATTAGCTTGGGAGAACTTCTGAAGACTCACTGCTCATCACTGAAATGATCAGCTGTGTAACTCCGAAGGAGCTAGGTGGTGGACCTCCACACATTGTCAAGGTCCCTCTAAAGTGGTCATTCGAATTGGAATTCACATATTCTCTGACTTTATAATTCGCCAAATCCTTCTCTGTAATCAAACCACCGCCCTCTTGGAACTCTTTGGCCATGATTTTAGCCATTTCACCGTGATAGAAAAGCTGAACCGGGTTTGGAGAGTTTCCGAGTCTTTCGAGAGTCTTTGCAAGTTTTGGGCGCTTCAGGATGTCTCCAGATGCGTAAGTGGCATTGGTTTCAGGGTTGATCCAGTGTCTGAAACAGAGTTCTATATAACGGGGCTTGCTATCAATTATTTTAGATCAACTAATAGTAAATTAGACATAATAGAACTCGAAGAGT</canonical>
            <polymorphic>AGTCATCCATCTCGTCGTTCCATAGAATTCCGAACTCGGTGGACTCGACTGCGGCACCGAACCTTAAATGATAGCTGAATTATCTCGATTCCTGTAAAAGATATCAGAAACTTGTCAACTGACAAAATTTTTATCATAATATCAATAATGTTTTATCAGTTGACATACTGTTGCTATCTCACATAGGAACCGAGATAATTGGGCTCAAACCTTACCATCTATTAATAGTTGTTGTCACCGAGACTCCATTCCCATATTGATCCATAGCGGACACGTGGCTGGTACCATGGTCCGGTGGAACGTACTGTGCGATGCCTCCATAGTTCTTTGATGGTTGCGCCTTCTCCTCCATTCTATCAATCACCCATTGAGTGTATTCTGGGGTAGTTAAGTTTTTGGAAAGTTCCAGAGCCCCTTTGACAAAGTCATGGTCTCCGAGAAGAGTGCGTTGAGCGTAGGAGAATTTCATGGCTTCAATGTACTTGTGAAGCACTTTAGGRTCTTGATAGATGTCGTCGTGGTGGCCTTCGGGGAAGAGTTCTGGAAATTATATCTCAACTATTAGCTTGGGAGAACTTCTGAAGACTCACTGCTCATCACTGAAATGATCAGCTGTGTAACTCCGAAGGAGCTAGGTGGTGGACCTCCACACATTGTCAAGGTCCCTCTAAAGTGGTCATTCGAATTGGAATTCACATATTCTCTGACTTTATAATTCGCCAAATCCTTCTCTGTAATCAAACCACCGCCCTCTTGGAACTCTTTGGCCATGATTTTAGCCATTTCACCGTGATAGAAAAGCTGAACCGGGTTTGGAGAGTTTCCGAGTCTTTCGAGAGTCTTTGCAAGTTTTGGGCGCTTCAGGATGTCTCCAGATGCGTAAGTGGCATTGGTTTCAGGGTTGATCCAGTGTCTGAAACAGAGTTCTATATAACGGGGCTTGCTATCAATTATTTTAGATCAACTAATAGTAAATTAGACATAATAGAACTCGAAGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGGGGTAGTTAAGTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>AGTTACACAGCTGATCATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGGGGTAGTTAAGTTTTTGGAAAGTTCCAGAGCCCCTTTGACAAAGTCATGGTCTCCGAGAAGAGTGCGTTGAGCGTAGGAGAATTTCATGGCTTCAATGTACTTGTGAAGCACTTTAGGGTCTTGATAGATGTCGTCGTGGTGGCCTTCGGGGAAGAGTTCTGGAAATTATATCTCAACTATTAGCTTGGGAGAACTTCTGAAGACTCACTGCTCATCACTGAAATGATCAGCTGTGTAACT</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGGGGTAGTTAAGTTTTTGGAAAGTTCCAGAGCCCCTTTGACAAAGTCATGGTCTCCGAGAAGAGTGCGTTGAGCGTAGGAGAATTTCATGGCTTCAATGTACTTGTGAAGCACTTTAGGRTCTTGATAGATGTCGTCGTGGTGGCCTTCGGGGAAGAGTTCTGGAAATTATATCTCAACTATTAGCTTGGGAGAACTTCTGAAGACTCACTGCTCATCACTGAAATGATCAGCTGTGTAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30538</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>179774</contig_pos>
        <strand></strand>
        <context>taagagatat[A/C]aaaaatctgt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATAT</left_flank>
        <right_flank>AAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTGAGCTAGAAAGCTGGTTTCCGGGCACTGTGCCAAAAAACTAATCAAATCAACCCTATGAGTCATCTTCTCTCACCCACATGTTAGCCTTGACTTGAATAAGAAGAATTAGCTGAATGGCCATAGTACAAAATCAAATCACTCCTTCTATAGAAATGAGCTAGATCAAGTCAGAAACACCCCGTCATGTGTTATTTGAACTTTTGAACAGATACGAATTCTGAGAATCTCTAGAATTTCTATTGTGGTTCTAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGATCATAATGTGTTCTAAAACATCTACCATTTAGTATTTGGACTGCAAATTTTTTTTGGGTCAAACGTAGAAAATATGTGCCACGTCATCACTTCCTGAACGACTAAAAAGAAAAAGAAGAAGAAAAGTGGCATGCAAGGATTATGAAGAGATTTGTATTGGGGATAAA</canonical>
            <polymorphic>AGCTGAGCTAGAAAGCTGGTTTCCGGGCACTGTGCCAAAAAACTAATCAAATCAACCCTATGAGTCATCTTCTCTCACCCACATGTTAGCCTTGACTTGAATAAGAAGAATTAGCTGAATGGCCATAGTACAAAATCAAATCACTCCTTCTATAGAAATGAGCTAGATCAAGTCAGAAACACCCCGTCATGTGTTATTTGAACTTTTGAACAGATACGAATTCTGAGAATCTCTAGAATTTCTATTGTGGTTCTAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATMAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGATCATAATGTGTTCTAAAACATCTACCATTTAGTATTTGGACTGCAAATTTTTTTTGGGTCAAACGTAGAAAATATGTGCCACGTCATCACTTCCTGAACGACTAAAAAGAAAAAGAAGAAGAAAAGTGGCATGCAAGGATTATGAAGAGATTTGTATTGGGGATAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATTCCCAGAACTCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATCTAATGGGTCATCCTATGC</pcr_primer_p2>
		<pcr_amplicon_size>581</pcr_amplicon_size>
		<canonical_amplicon>TAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGAT</canonical_amplicon>
		<polymorphic_amplicon>TAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATMAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30539</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>179822</contig_pos>
        <strand></strand>
        <context>gatcaacatt[C/T]tatcagttkg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATT</left_flank>
        <right_flank>TATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCAACCCTATGAGTCATCTTCTCTCACCCACATGTTAGCCTTGACTTGAATAAGAAGAATTAGCTGAATGGCCATAGTACAAAATCAAATCACTCCTTCTATAGAAATGAGCTAGATCAAGTCAGAAACACCCCGTCATGTGTTATTTGAACTTTTGAACAGATACGAATTCTGAGAATCTCTAGAATTTCTATTGTGGTTCTAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGATCATAATGTGTTCTAAAACATCTACCATTTAGTATTTGGACTGCAAATTTTTTTTGGGTCAAACGTAGAAAATATGTGCCACGTCATCACTTCCTGAACGACTAAAAAGAAAAAGAAGAAGAAAAGTGGCATGCAAGGATTATGAAGAGATTTGTATTGGGGATAAAAAAATATGATGCCCACTGGATATGCTCCTTTTCAGCAGCCAAGAGAGG</canonical>
            <polymorphic>AAATCAACCCTATGAGTCATCTTCTCTCACCCACATGTTAGCCTTGACTTGAATAAGAAGAATTAGCTGAATGGCCATAGTACAAAATCAAATCACTCCTTCTATAGAAATGAGCTAGATCAAGTCAGAAACACCCCGTCATGTGTTATTTGAACTTTTGAACAGATACGAATTCTGAGAATCTCTAGAATTTCTATTGTGGTTCTAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTYTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGATCATAATGTGTTCTAAAACATCTACCATTTAGTATTTGGACTGCAAATTTTTTTTGGGTCAAACGTAGAAAATATGTGCCACGTCATCACTTCCTGAACGACTAAAAAGAAAAAGAAGAAGAAAAGTGGCATGCAAGGATTATGAAGAGATTTGTATTGGGGATAAAAAAATATGATGCCCACTGGATATGCTCCTTTTCAGCAGCCAAGAGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATTCCCAGAACTCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATCTAATGGGTCATCCTATGC</pcr_primer_p2>
		<pcr_amplicon_size>581</pcr_amplicon_size>
		<canonical_amplicon>TAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGAT</canonical_amplicon>
		<polymorphic_amplicon>TAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTYTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30540</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>179831</contig_pos>
        <strand></strand>
        <context>tytatcagtt[T/G]gaaatttttk</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTT</left_flank>
        <right_flank>GAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATGAGTCATCTTCTCTCACCCACATGTTAGCCTTGACTTGAATAAGAAGAATTAGCTGAATGGCCATAGTACAAAATCAAATCACTCCTTCTATAGAAATGAGCTAGATCAAGTCAGAAACACCCCGTCATGTGTTATTTGAACTTTTGAACAGATACGAATTCTGAGAATCTCTAGAATTTCTATTGTGGTTCTAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGATCATAATGTGTTCTAAAACATCTACCATTTAGTATTTGGACTGCAAATTTTTTTTGGGTCAAACGTAGAAAATATGTGCCACGTCATCACTTCCTGAACGACTAAAAAGAAAAAGAAGAAGAAAAGTGGCATGCAAGGATTATGAAGAGATTTGTATTGGGGATAAAAAAATATGATGCCCACTGGATATGCTCCTTTTCAGCAGCCAAGAGAGGATGCTCTAC</canonical>
            <polymorphic>CTATGAGTCATCTTCTCTCACCCACATGTTAGCCTTGACTTGAATAAGAAGAATTAGCTGAATGGCCATAGTACAAAATCAAATCACTCCTTCTATAGAAATGAGCTAGATCAAGTCAGAAACACCCCGTCATGTGTTATTTGAACTTTTGAACAGATACGAATTCTGAGAATCTCTAGAATTTCTATTGTGGTTCTAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTKGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGATCATAATGTGTTCTAAAACATCTACCATTTAGTATTTGGACTGCAAATTTTTTTTGGGTCAAACGTAGAAAATATGTGCCACGTCATCACTTCCTGAACGACTAAAAAGAAAAAGAAGAAGAAAAGTGGCATGCAAGGATTATGAAGAGATTTGTATTGGGGATAAAAAAATATGATGCCCACTGGATATGCTCCTTTTCAGCAGCCAAGAGAGGATGCTCTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATTCCCAGAACTCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATCTAATGGGTCATCCTATGC</pcr_primer_p2>
		<pcr_amplicon_size>581</pcr_amplicon_size>
		<canonical_amplicon>TAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGAT</canonical_amplicon>
		<polymorphic_amplicon>TAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTKGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30541</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>179841</contig_pos>
        <strand></strand>
        <context>kgaaattttt[G/T]tatatctttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTT</left_flank>
        <right_flank>TATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCTCTCACCCACATGTTAGCCTTGACTTGAATAAGAAGAATTAGCTGAATGGCCATAGTACAAAATCAAATCACTCCTTCTATAGAAATGAGCTAGATCAAGTCAGAAACACCCCGTCATGTGTTATTTGAACTTTTGAACAGATACGAATTCTGAGAATCTCTAGAATTTCTATTGTGGTTCTAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGATCATAATGTGTTCTAAAACATCTACCATTTAGTATTTGGACTGCAAATTTTTTTTGGGTCAAACGTAGAAAATATGTGCCACGTCATCACTTCCTGAACGACTAAAAAGAAAAAGAAGAAGAAAAGTGGCATGCAAGGATTATGAAGAGATTTGTATTGGGGATAAAAAAATATGATGCCCACTGGATATGCTCCTTTTCAGCAGCCAAGAGAGGATGCTCTACTGGAAGCACA</canonical>
            <polymorphic>TCTTCTCTCACCCACATGTTAGCCTTGACTTGAATAAGAAGAATTAGCTGAATGGCCATAGTACAAAATCAAATCACTCCTTCTATAGAAATGAGCTAGATCAAGTCAGAAACACCCCGTCATGTGTTATTTGAACTTTTGAACAGATACGAATTCTGAGAATCTCTAGAATTTCTATTGTGGTTCTAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTKTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGATCATAATGTGTTCTAAAACATCTACCATTTAGTATTTGGACTGCAAATTTTTTTTGGGTCAAACGTAGAAAATATGTGCCACGTCATCACTTCCTGAACGACTAAAAAGAAAAAGAAGAAGAAAAGTGGCATGCAAGGATTATGAAGAGATTTGTATTGGGGATAAAAAAATATGATGCCCACTGGATATGCTCCTTTTCAGCAGCCAAGAGAGGATGCTCTACTGGAAGCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATTCCCAGAACTCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATCTAATGGGTCATCCTATGC</pcr_primer_p2>
		<pcr_amplicon_size>581</pcr_amplicon_size>
		<canonical_amplicon>TAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGAT</canonical_amplicon>
		<polymorphic_amplicon>TAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTKTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30542</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>179935</contig_pos>
        <strand></strand>
        <context>AATCCTGTAC[G/A]ttgacttyga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTAC</left_flank>
        <right_flank>TTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTAGATCAAGTCAGAAACACCCCGTCATGTGTTATTTGAACTTTTGAACAGATACGAATTCTGAGAATCTCTAGAATTTCTATTGTGGTTCTAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGATCATAATGTGTTCTAAAACATCTACCATTTAGTATTTGGACTGCAAATTTTTTTTGGGTCAAACGTAGAAAATATGTGCCACGTCATCACTTCCTGAACGACTAAAAAGAAAAAGAAGAAGAAAAGTGGCATGCAAGGATTATGAAGAGATTTGTATTGGGGATAAAAAAATATGATGCCCACTGGATATGCTCCTTTTCAGCAGCCAAGAGAGGATGCTCTACTGGAAGCACATCTTATACGTCCACTTTGAGCTCATATAGCTCATTTCCTGGGAAAGATATCAAAAAGTAGTCAACTGATAAAATGTTTATCATAATATTACTAA</canonical>
            <polymorphic>GCTAGATCAAGTCAGAAACACCCCGTCATGTGTTATTTGAACTTTTGAACAGATACGAATTCTGAGAATCTCTAGAATTTCTATTGTGGTTCTAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACRTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGATCATAATGTGTTCTAAAACATCTACCATTTAGTATTTGGACTGCAAATTTTTTTTGGGTCAAACGTAGAAAATATGTGCCACGTCATCACTTCCTGAACGACTAAAAAGAAAAAGAAGAAGAAAAGTGGCATGCAAGGATTATGAAGAGATTTGTATTGGGGATAAAAAAATATGATGCCCACTGGATATGCTCCTTTTCAGCAGCCAAGAGAGGATGCTCTACTGGAAGCACATCTTATACGTCCACTTTGAGCTCATATAGCTCATTTCCTGGGAAAGATATCAAAAAGTAGTCAACTGATAAAATGTTTATCATAATATTACTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>370 350 152 96 32</canonical_bands>
                <polymorphic_bands>370 350 248 32</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>319 163 152 136 96 51 51 32</canonical_bands>
                <polymorphic_bands>319 248 163 136 51 51 32</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>295 237 203 160 87 18</canonical_bands>
                <polymorphic_bands>440 295 160 87 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAATTCCCAGAACTCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATCTAATGGGTCATCCTATGC</pcr_primer_p2>
		<pcr_amplicon_size>581</pcr_amplicon_size>
		<canonical_amplicon>TAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGAT</canonical_amplicon>
		<polymorphic_amplicon>TAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACRTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30543</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>179943</contig_pos>
        <strand></strand>
        <context>ACrttgactt[C/T]gagctcaaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTT</left_flank>
        <right_flank>GAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTCAGAAACACCCCGTCATGTGTTATTTGAACTTTTGAACAGATACGAATTCTGAGAATCTCTAGAATTTCTATTGTGGTTCTAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGATCATAATGTGTTCTAAAACATCTACCATTTAGTATTTGGACTGCAAATTTTTTTTGGGTCAAACGTAGAAAATATGTGCCACGTCATCACTTCCTGAACGACTAAAAAGAAAAAGAAGAAGAAAAGTGGCATGCAAGGATTATGAAGAGATTTGTATTGGGGATAAAAAAATATGATGCCCACTGGATATGCTCCTTTTCAGCAGCCAAGAGAGGATGCTCTACTGGAAGCACATCTTATACGTCCACTTTGAGCTCATATAGCTCATTTCCTGGGAAAGATATCAAAAAGTAGTCAACTGATAAAATGTTTATCATAATATTACTAATATTTTAT</canonical>
            <polymorphic>AAGTCAGAAACACCCCGTCATGTGTTATTTGAACTTTTGAACAGATACGAATTCTGAGAATCTCTAGAATTTCTATTGTGGTTCTAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTYGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGATCATAATGTGTTCTAAAACATCTACCATTTAGTATTTGGACTGCAAATTTTTTTTGGGTCAAACGTAGAAAATATGTGCCACGTCATCACTTCCTGAACGACTAAAAAGAAAAAGAAGAAGAAAAGTGGCATGCAAGGATTATGAAGAGATTTGTATTGGGGATAAAAAAATATGATGCCCACTGGATATGCTCCTTTTCAGCAGCCAAGAGAGGATGCTCTACTGGAAGCACATCTTATACGTCCACTTTGAGCTCATATAGCTCATTTCCTGGGAAAGATATCAAAAAGTAGTCAACTGATAAAATGTTTATCATAATATTACTAATATTTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 267 233</canonical_bands>
                <polymorphic_bands>733 267</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAATTCCCAGAACTCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATCTAATGGGTCATCCTATGC</pcr_primer_p2>
		<pcr_amplicon_size>581</pcr_amplicon_size>
		<canonical_amplicon>TAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGAT</canonical_amplicon>
		<polymorphic_amplicon>TAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTYGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30544</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>179990</contig_pos>
        <strand></strand>
        <context>aaagctgtaa[G/A]ctgataaaat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAA</left_flank>
        <right_flank>CTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAAC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAATTCTGAGAATCTCTAGAATTTCTATTGTGGTTCTAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGATCATAATGTGTTCTAAAACATCTACCATTTAGTATTTGGACTGCAAATTTTTTTTGGGTCAAACGTAGAAAATATGTGCCACGTCATCACTTCCTGAACGACTAAAAAGAAAAAGAAGAAGAAAAGTGGCATGCAAGGATTATGAAGAGATTTGTATTGGGGATAAAAAAATATGATGCCCACTGGATATGCTCCTTTTCAGCAGCCAAGAGAGGATGCTCTACTGGAAGCACATCTTATACGTCCACTTTGAGCTCATATAGCTCATTTCCTGGGAAAGATATCAAAAAGTAGTCAACTGATAAAATGTTTATCATAATATTACTAATATTTTATCAGTTGAAACATTTTTTATATCTCTTATGGGAACCGAGATAATTGAG</canonical>
            <polymorphic>CGAATTCTGAGAATCTCTAGAATTTCTATTGTGGTTCTAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAARCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGATCATAATGTGTTCTAAAACATCTACCATTTAGTATTTGGACTGCAAATTTTTTTTGGGTCAAACGTAGAAAATATGTGCCACGTCATCACTTCCTGAACGACTAAAAAGAAAAAGAAGAAGAAAAGTGGCATGCAAGGATTATGAAGAGATTTGTATTGGGGATAAAAAAATATGATGCCCACTGGATATGCTCCTTTTCAGCAGCCAAGAGAGGATGCTCTACTGGAAGCACATCTTATACGTCCACTTTGAGCTCATATAGCTCATTTCCTGGGAAAGATATCAAAAAGTAGTCAACTGATAAAATGTTTATCATAATATTACTAATATTTTATCAGTTGAAACATTTTTTATATCTCTTATGGGAACCGAGATAATTGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>286 187 120 111 92 71 66 37 14 9 7</canonical_bands>
                <polymorphic_bands>286 187 120 111 92 71 66 37 21 9</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>237 163 120 111 71 66 49 42 37 24 24 17 14 9 9 7</canonical_bands>
                <polymorphic_bands>237 163 120 111 71 66 49 42 37 24 24 21 17 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAATTCCCAGAACTCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATCTAATGGGTCATCCTATGC</pcr_primer_p2>
		<pcr_amplicon_size>581</pcr_amplicon_size>
		<canonical_amplicon>TAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAAGCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGAT</canonical_amplicon>
		<polymorphic_amplicon>TAAATTCCCAGAACTCCTTTCACTTTGAGCTCAATTACCTCGGTTCCTATGAGAGATATCAAAAATCTGTCCACTGATAAAATATTACTGATATTATGATAAACAATTTATTTGCTGACAGATTTTTAATATCTTCTGAAGGAACCGAGAGAAATCAGGTCAAAGTTAGAAGGACCAACGCTCGAATAGAAGCCCACCCTTTACGTTCACTTTAAGCTTAATTATCTTGATTCATATAAGAGATATAAAAAATCTGTCAACTGATAAAATATTGGTGATTTTATGATCAACATTCTATCAGTTTGAAATTTTTGTATATCTTTTGAGCTAACTAAGATAATTGAGGTCAAAGGGCGTGCTGCTAGTGAGCCACGCTGTGGGCGCGGCCGTCTGGGCCAATCCTGTACGTTGACTTCGAGCTCAAATGTCTCGCTTCATAGGAAAGATATCAAAAAGCTGTAARCTGATAAAATGTAGCTGATATCATGATAAACCATTTATCAGTTGACAAACTTTTGATATCTCTAATAGAACCCGAGATAATTGAGCTCAAAGTGTATGCATAGGATGACCCATTAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30545</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>191062</contig_pos>
        <strand>+</strand>
        <context>AAAAAAAATA[C/T]TTTTTTTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGATCAATTTTTCCGAAAATTTTGAAAAAAATTTCGGAAAAAAAATA</left_flank>
        <right_flank>TTTTTTTTCTAATTCCCGCCCCTAAAAATCGATACTTTTAGCTGTAATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGAAAATTAAACGAATTTCGACACAAAAAACCGAGAAAATCGACCGATTTCTCCACCAAAAATCCCAAATTTCCAGATGTTCTCCCGTCTCGGAGGTCTCCTAACCGGGTTGTCGAGCACAATTAGTTGCTCGCTGAGAGCCACCACTTCAACACTGCTCCCATCATCAGCTGCACAGTCTGCCCGTTTTCGACAAGTTTTCCGGCATGGCGCAATAATTTTTTGCAGGTTTTCAGCCCTATTTTAGGTCAAATACCCCCGAAAAATCGATATTTTCAGTTCATCCACTACCGGAACGGACCGCCAAAGCGGCGTGCGCGCAGTAAGGACAAGAGTCCGATCAGTGGATACAGCCATTTCAAGGGAATCGTGCTGAAAAGTATGGGACAAAAATCGTATTGAAAATTTTCTGAAAAAATCGAAAAAATGCCTAAAAACACTGAAAATTTTTGATCAATTTTTCCGAAAATTTTGAAAAAAATTTCGGAAAAAAAATATTTTTTTTTCTAATTCCCGCCCCTAAAAATCGATACTTTTAGCTGTAATTCGTCACCCGAAAAAGCCAAATTCCGGAAATCGAAAATGCGCAATTGTGAGACTATCGACAGGAGCGGAAGTTTGTGCCTATATTCCCAACGTTGGACACAATTTACAAGAGCATTCACAAGTAGGATTTGACTCCTTATTTTTTGAGAAAAGACCCCTATTTTTGTAGGTACTGGTTAAAGGAGGACGTCGACGAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGTTTTTTTTTGTCAAAACTTCGATTTTTT</canonical>
            <polymorphic>ATGGAAAATTAAACGAATTTCGACACAAAAAACCGAGAAAATCGACCGATTTCTCCACCAAAAATCCCAAATTTCCAGATGTTCTCCCGTCTCGGAGGTCTCCTAACCGGGTTGTCGAGCACAATTAGTTGCTCGCTGAGAGCCACCACTTCAACACTGCTCCCATCATCAGCTGCACAGTCTGCCCGTTTTCGACAAGTTTTCCGGCATGGCGCAATAATTTTTTGCAGGTTTTCAGCCCTATTTTAGGTCAAATACCCCCGAAAAATCGATATTTTCAGTTCATCCACTACCGGAACGGACCGCCAAAGCGGCGTGCGCGCAGTAAGGACAAGAGTCCGATCAGTGGATACAGCCATTTCAAGGGAATCGTGCTGAAAAGTATGGGACAAAAATCGTATTGAAAATTTTCTGAAAAAATCGAAAAAATGCCTAAAAACACTGAAAATTTTTGATCAATTTTTCCGAAAATTTTGAAAAAAATTTCGGAAAAAAAATAYTTTTTTTTCTAATTCCCGCCCCTAAAAATCGATACTTTTAGCTGTAATTCGTCACCCGAAAAAGCCAAATTCCGGAAATCGAAAATGCGCAATTGTGAGACTATCGACAGGAGCGGAAGTTTGTGCCTATATTCCCAACGTTGGACACAATTTACAAGAGCATTCACAAGTAGGATTTGACTCCTTATTTTTTGAGAAAAGACCCCTATTTTTGTAGGTACTGGTTAAAGGAGGACGTCGACGAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGTTTTTTTTTGTCAAAACTTCGATTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>498 406 96</canonical_bands>
                <polymorphic_bands>904 96</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGCCTAAAAACACTGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATCCTACTTGTGAATGCTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATGCCTAAAAACACTGAAAATTTTTGATCAATTTTTCCGAAAATTTTGAAAAAAATTTCGGAAAAAAAATATTTTTTTTTCTAATTCCCGCCCCTAAAAATCGATACTTTTAGCTGTAATTCGTCACCCGAAAAAGCCAAATTCCGGAAATCGAAAATGCGCAATTGTGAGACTATCGACAGGAGCGGAAGTTTGTGCCTATATTCCCAACGTTGGACACAATTTACAAGAGCATTCACAAGTAGGAT</canonical_amplicon>
		<polymorphic_amplicon>AAATGCCTAAAAACACTGAAAATTTTTGATCAATTTTTCCGAAAATTTTGAAAAAAATTTCGGAAAAAAAATAYTTTTTTTTCTAATTCCCGCCCCTAAAAATCGATACTTTTAGCTGTAATTCGTCACCCGAAAAAGCCAAATTCCGGAAATCGAAAATGCGCAATTGTGAGACTATCGACAGGAGCGGAAGTTTGTGCCTATATTCCCAACGTTGGACACAATTTACAAGAGCATTCACAAGTAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30546</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>191097</contig_pos>
        <strand></strand>
        <context>AAAATCGATA[C/T]TTTTAGCTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCGGAAAAAAAATATTTTTTTTTCTAATTCCCGCCCCTAAAAATCGATA</left_flank>
        <right_flank>TTTTAGCTGTAATTCGTCACCCGAAAAAGCCAAATTCCGGAAATCGAAAA</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAAATCGACCGATTTCTCCACCAAAAATCCCAAATTTCCAGATGTTCTCCCGTCTCGGAGGTCTCCTAACCGGGTTGTCGAGCACAATTAGTTGCTCGCTGAGAGCCACCACTTCAACACTGCTCCCATCATCAGCTGCACAGTCTGCCCGTTTTCGACAAGTTTTCCGGCATGGCGCAATAATTTTTTGCAGGTTTTCAGCCCTATTTTAGGTCAAATACCCCCGAAAAATCGATATTTTCAGTTCATCCACTACCGGAACGGACCGCCAAAGCGGCGTGCGCGCAGTAAGGACAAGAGTCCGATCAGTGGATACAGCCATTTCAAGGGAATCGTGCTGAAAAGTATGGGACAAAAATCGTATTGAAAATTTTCTGAAAAAATCGAAAAAATGCCTAAAAACACTGAAAATTTTTGATCAATTTTTCCGAAAATTTTGAAAAAAATTTCGGAAAAAAAATATTTTTTTTTCTAATTCCCGCCCCTAAAAATCGATACTTTTAGCTGTAATTCGTCACCCGAAAAAGCCAAATTCCGGAAATCGAAAATGCGCAATTGTGAGACTATCGACAGGAGCGGAAGTTTGTGCCTATATTCCCAACGTTGGACACAATTTACAAGAGCATTCACAAGTAGGATTTGACTCCTTATTTTTTGAGAAAAGACCCCTATTTTTGTAGGTACTGGTTAAAGGAGGACGTCGACGAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGTTTTTTTTTGTCAAAACTTCGATTTTTTTAGACAGAATTAGCTAAAAATTTGAAATTTTTGTG</canonical>
            <polymorphic>AGAAAATCGACCGATTTCTCCACCAAAAATCCCAAATTTCCAGATGTTCTCCCGTCTCGGAGGTCTCCTAACCGGGTTGTCGAGCACAATTAGTTGCTCGCTGAGAGCCACCACTTCAACACTGCTCCCATCATCAGCTGCACAGTCTGCCCGTTTTCGACAAGTTTTCCGGCATGGCGCAATAATTTTTTGCAGGTTTTCAGCCCTATTTTAGGTCAAATACCCCCGAAAAATCGATATTTTCAGTTCATCCACTACCGGAACGGACCGCCAAAGCGGCGTGCGCGCAGTAAGGACAAGAGTCCGATCAGTGGATACAGCCATTTCAAGGGAATCGTGCTGAAAAGTATGGGACAAAAATCGTATTGAAAATTTTCTGAAAAAATCGAAAAAATGCCTAAAAACACTGAAAATTTTTGATCAATTTTTCCGAAAATTTTGAAAAAAATTTCGGAAAAAAAATATTTTTTTTTCTAATTCCCGCCCCTAAAAATCGATAYTTTTAGCTGTAATTCGTCACCCGAAAAAGCCAAATTCCGGAAATCGAAAATGCGCAATTGTGAGACTATCGACAGGAGCGGAAGTTTGTGCCTATATTCCCAACGTTGGACACAATTTACAAGAGCATTCACAAGTAGGATTTGACTCCTTATTTTTTGAGAAAAGACCCCTATTTTTGTAGGTACTGGTTAAAGGAGGACGTCGACGAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGTTTTTTTTTGTCAAAACTTCGATTTTTTTAGACAGAATTAGCTAAAAATTTGAAATTTTTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGCCTAAAAACACTGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATCCTACTTGTGAATGCTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATGCCTAAAAACACTGAAAATTTTTGATCAATTTTTCCGAAAATTTTGAAAAAAATTTCGGAAAAAAAATATTTTTTTTTCTAATTCCCGCCCCTAAAAATCGATACTTTTAGCTGTAATTCGTCACCCGAAAAAGCCAAATTCCGGAAATCGAAAATGCGCAATTGTGAGACTATCGACAGGAGCGGAAGTTTGTGCCTATATTCCCAACGTTGGACACAATTTACAAGAGCATTCACAAGTAGGAT</canonical_amplicon>
		<polymorphic_amplicon>AAATGCCTAAAAACACTGAAAATTTTTGATCAATTTTTCCGAAAATTTTGAAAAAAATTTCGGAAAAAAAATATTTTTTTTTCTAATTCCCGCCCCTAAAAATCGATAYTTTTAGCTGTAATTCGTCACCCGAAAAAGCCAAATTCCGGAAATCGAAAATGCGCAATTGTGAGACTATCGACAGGAGCGGAAGTTTGTGCCTATATTCCCAACGTTGGACACAATTTACAAGAGCATTCACAAGTAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30547</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>191275</contig_pos>
        <strand>+</strand>
        <context>CCCCTATTTT[C/T]STAGGTACTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCACAAGTAGGATTTGACTCCTTATTTTTTGAGAAAAGACCCCTATTTT</left_flank>
        <right_flank>GTAGGTACTGGTTAAAGGAGGACGTCGACGAGACTTGATTTCGGTCAAAG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAATAATTTTTTGCAGGTTTTCAGCCCTATTTTAGGTCAAATACCCCCGAAAAATCGATATTTTCAGTTCATCCACTACCGGAACGGACCGCCAAAGCGGCGTGCGCGCAGTAAGGACAAGAGTCCGATCAGTGGATACAGCCATTTCAAGGGAATCGTGCTGAAAAGTATGGGACAAAAATCGTATTGAAAATTTTCTGAAAAAATCGAAAAAATGCCTAAAAACACTGAAAATTTTTGATCAATTTTTCCGAAAATTTTGAAAAAAATTTCGGAAAAAAAATATTTTTTTTTCTAATTCCCGCCCCTAAAAATCGATACTTTTAGCTGTAATTCGTCACCCGAAAAAGCCAAATTCCGGAAATCGAAAATGCGCAATTGTGAGACTATCGACAGGAGCGGAAGTTTGTGCCTATATTCCCAACGTTGGACACAATTTACAAGAGCATTCACAAGTAGGATTTGACTCCTTATTTTTTGAGAAAAGACCCCTATTTTTGTAGGTACTGGTTAAAGGAGGACGTCGACGAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGTTTTTTTTTGTCAAAACTTCGATTTTTTTAGACAGAATTAGCTAAAAATTTGAAATTTTTGTGAAATTTCTGACATTTTTGGACCCTGAATTGCCTTTTTATTCTGAAAATTCTGATTTTCAGGTTATTTTTCCAAAATTCGACGGTGGGCGGAGCTTAGAAATCCTTAAAGCATTTTCAGGCCTATTTTTTCAGATTTTCGATGGATTTAAACGGTTTTGAGATGTATTTTCAGACAAAA</canonical>
            <polymorphic>GCAATAATTTTTTGCAGGTTTTCAGCCCTATTTTAGGTCAAATACCCCCGAAAAATCGATATTTTCAGTTCATCCACTACCGGAACGGACCGCCAAAGCGGCGTGCGCGCAGTAAGGACAAGAGTCCGATCAGTGGATACAGCCATTTCAAGGGAATCGTGCTGAAAAGTATGGGACAAAAATCGTATTGAAAATTTTCTGAAAAAATCGAAAAAATGCCTAAAAACACTGAAAATTTTTGATCAATTTTTCCGAAAATTTTGAAAAAAATTTCGGAAAAAAAATATTTTTTTTTCTAATTCCCGCCCCTAAAAATCGATACTTTTAGCTGTAATTCGTCACCCGAAAAAGCCAAATTCCGGAAATCGAAAATGCGCAATTGTGAGACTATCGACAGGAGCGGAAGTTTGTGCCTATATTCCCAACGTTGGACACAATTTACAAGAGCATTCACAAGTAGGATTTGACTCCTTATTTTTTGAGAAAAGACCCCTATTTTYGTAGGTACTGGTTAAAGGAGGACGTCGACGAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGTTTTTTTTTGTCAAAACTTCGATTTTTTTAGACAGAATTAGCTAAAAATTTGAAATTTTTGTGAAATTTCTGACATTTTTGGACCCTGAATTGCCTTTTTATTCTGAAAATTCTGATTTTCAGGTTATTTTTCCAAAATTCGACGGTGGGCGGAGCTTAGAAATCCTTAAAGCATTTTCAGGCCTATTTTTTCAGATTTTCGATGGATTTAAACGGTTTTGAGATGTATTTTCAGACAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACAAGAGCATTCACAAGTAGG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCAATAAACGGAGAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACAAGAGCATTCACAAGTAGGATTTGACTCCTTATTTTTTGAGAAAAGACCCCTATTTTTGTAGGTACTGGTTAAAGGAGGACGTCGACGAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TACAAGAGCATTCACAAGTAGGATTTGACTCCTTATTTTTTGAGAAAAGACCCCTATTTTYGTAGGTACTGGTTAAAGGAGGACGTCGACGAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30548</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>191276</contig_pos>
        <strand>+</strand>
        <context>CCCTATTTTY[C/G]TAGGTACTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCACAAGTAGGATTTGACTCCTTATTTTTTGAGAAAAGACCCCTATTTTT</left_flank>
        <right_flank>TAGGTACTGGTTAAAGGAGGACGTCGACGAGACTTGATTTCGGTCAAAGC</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATAATTTTTTGCAGGTTTTCAGCCCTATTTTAGGTCAAATACCCCCGAAAAATCGATATTTTCAGTTCATCCACTACCGGAACGGACCGCCAAAGCGGCGTGCGCGCAGTAAGGACAAGAGTCCGATCAGTGGATACAGCCATTTCAAGGGAATCGTGCTGAAAAGTATGGGACAAAAATCGTATTGAAAATTTTCTGAAAAAATCGAAAAAATGCCTAAAAACACTGAAAATTTTTGATCAATTTTTCCGAAAATTTTGAAAAAAATTTCGGAAAAAAAATATTTTTTTTTCTAATTCCCGCCCCTAAAAATCGATACTTTTAGCTGTAATTCGTCACCCGAAAAAGCCAAATTCCGGAAATCGAAAATGCGCAATTGTGAGACTATCGACAGGAGCGGAAGTTTGTGCCTATATTCCCAACGTTGGACACAATTTACAAGAGCATTCACAAGTAGGATTTGACTCCTTATTTTTTGAGAAAAGACCCCTATTTTTGTAGGTACTGGTTAAAGGAGGACGTCGACGAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGTTTTTTTTTGTCAAAACTTCGATTTTTTTAGACAGAATTAGCTAAAAATTTGAAATTTTTGTGAAATTTCTGACATTTTTGGACCCTGAATTGCCTTTTTATTCTGAAAATTCTGATTTTCAGGTTATTTTTCCAAAATTCGACGGTGGGCGGAGCTTAGAAATCCTTAAAGCATTTTCAGGCCTATTTTTTCAGATTTTCGATGGATTTAAACGGTTTTGAGATGTATTTTCAGACAAAAG</canonical>
            <polymorphic>CAATAATTTTTTGCAGGTTTTCAGCCCTATTTTAGGTCAAATACCCCCGAAAAATCGATATTTTCAGTTCATCCACTACCGGAACGGACCGCCAAAGCGGCGTGCGCGCAGTAAGGACAAGAGTCCGATCAGTGGATACAGCCATTTCAAGGGAATCGTGCTGAAAAGTATGGGACAAAAATCGTATTGAAAATTTTCTGAAAAAATCGAAAAAATGCCTAAAAACACTGAAAATTTTTGATCAATTTTTCCGAAAATTTTGAAAAAAATTTCGGAAAAAAAATATTTTTTTTTCTAATTCCCGCCCCTAAAAATCGATACTTTTAGCTGTAATTCGTCACCCGAAAAAGCCAAATTCCGGAAATCGAAAATGCGCAATTGTGAGACTATCGACAGGAGCGGAAGTTTGTGCCTATATTCCCAACGTTGGACACAATTTACAAGAGCATTCACAAGTAGGATTTGACTCCTTATTTTTTGAGAAAAGACCCCTATTTTTSTAGGTACTGGTTAAAGGAGGACGTCGACGAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGTTTTTTTTTGTCAAAACTTCGATTTTTTTAGACAGAATTAGCTAAAAATTTGAAATTTTTGTGAAATTTCTGACATTTTTGGACCCTGAATTGCCTTTTTATTCTGAAAATTCTGATTTTCAGGTTATTTTTCCAAAATTCGACGGTGGGCGGAGCTTAGAAATCCTTAAAGCATTTTCAGGCCTATTTTTTCAGATTTTCGATGGATTTAAACGGTTTTGAGATGTATTTTCAGACAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACAAGAGCATTCACAAGTAGG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCAATAAACGGAGAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACAAGAGCATTCACAAGTAGGATTTGACTCCTTATTTTTTGAGAAAAGACCCCTATTTTTGTAGGTACTGGTTAAAGGAGGACGTCGACGAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TACAAGAGCATTCACAAGTAGGATTTGACTCCTTATTTTTTGAGAAAAGACCCCTATTTTTSTAGGTACTGGTTAAAGGAGGACGTCGACGAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30549</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>191487</contig_pos>
        <strand>+</strand>
        <context>CGCTTTTTTT[A/G]AAAATATAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTT</left_flank>
        <right_flank>AAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATGCCTAAAAACACTGAAAATTTTTGATCAATTTTTCCGAAAATTTTGAAAAAAATTTCGGAAAAAAAATATTTTTTTTTCTAATTCCCGCCCCTAAAAATCGATACTTTTAGCTGTAATTCGTCACCCGAAAAAGCCAAATTCCGGAAATCGAAAATGCGCAATTGTGAGACTATCGACAGGAGCGGAAGTTTGTGCCTATATTCCCAACGTTGGACACAATTTACAAGAGCATTCACAAGTAGGATTTGACTCCTTATTTTTTGAGAAAAGACCCCTATTTTTGTAGGTACTGGTTAAAGGAGGACGTCGACGAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGTTTTTTTTTGTCAAAACTTCGATTTTTTTAGACAGAATTAGCTAAAAATTTGAAATTTTTGTGAAATTTCTGACATTTTTGGACCCTGAATTGCCTTTTTATTCTGAAAATTCTGATTTTCAGGTTATTTTTCCAAAATTCGACGGTGGGCGGAGCTTAGAAATCCTTAAAGCATTTTCAGGCCTATTTTTTCAGATTTTCGATGGATTTAAACGGTTTTGAGATGTATTTTCAGACAAAAGTGCGAAAAATCGCGAAAAAAATTTGATAAAACAATGTAAATTACTTTAAAAAATCGAGAAAAATTGCCTAAAAACAATACAATTTTTTTTTGATTCTTCAAAAAAATTTCATTGTTTTTCGAATTTTTTTCTACAAAAATCGGAAGAATAGCAAAGAAAACTGCAAAAAAAGATAGAAATGATTGAAACATCGGGAAACATTGCTTTGAAA</canonical>
            <polymorphic>AAAATGCCTAAAAACACTGAAAATTTTTGATCAATTTTTCCGAAAATTTTGAAAAAAATTTCGGAAAAAAAATATTTTTTTTTCTAATTCCCGCCCCTAAAAATCGATACTTTTAGCTGTAATTCGTCACCCGAAAAAGCCAAATTCCGGAAATCGAAAATGCGCAATTGTGAGACTATCGACAGGAGCGGAAGTTTGTGCCTATATTCCCAACGTTGGACACAATTTACAAGAGCATTCACAAGTAGGATTTGACTCCTTATTTTTTGAGAAAAGACCCCTATTTTTGTAGGTACTGGTTAAAGGAGGACGTCGACGAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTRAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGTTTTTTTTTGTCAAAACTTCGATTTTTTTAGACAGAATTAGCTAAAAATTTGAAATTTTTGTGAAATTTCTGACATTTTTGGACCCTGAATTGCCTTTTTATTCTGAAAATTCTGATTTTCAGGTTATTTTTCCAAAATTCGACGGTGGGCGGAGCTTAGAAATCCTTAAAGCATTTTCAGGCCTATTTTTTCAGATTTTCGATGGATTTAAACGGTTTTGAGATGTATTTTCAGACAAAAGTGCGAAAAATCGCGAAAAAAATTTGATAAAACAATGTAAATTACTTTAAAAAATCGAGAAAAATTGCCTAAAAACAATACAATTTTTTTTTGATTCTTCAAAAAAATTTCATTGTTTTTCGAATTTTTTTCTACAAAAATCGGAAGAATAGCAAAGAAAACTGCAAAAAAAGATAGAAATGATTGAAACATCGGGAAACATTGCTTTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>421 258 164 79 78</canonical_bands>
                <polymorphic_bands>421 336 164 79</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>300 216 165 120 79 78 42</canonical_bands>
                <polymorphic_bands>300 294 165 120 79 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTAGTTTTTCTTCTTGTTCTTCTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCAGAATAAAAAGGCAATTC</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>AACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGTTTTTTTTTGTCAAAACTTCGATTTTTTTAGACAGAATTAGCTAAAAATTTGAAATTTTTGTGAAATTTCTGACATTTTTGGACCCTGAATTGCCTTTTTATTCTGAAA</canonical_amplicon>
		<polymorphic_amplicon>AACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTRAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGTTTTTTTTTGTCAAAACTTCGATTTTTTTAGACAGAATTAGCTAAAAATTTGAAATTTTTGTGAAATTTCTGACATTTTTGGACCCTGAATTGCCTTTTTATTCTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30550</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>191535</contig_pos>
        <strand>+</strand>
        <context>TGCTTTGCTG[A/G]TTTTTTTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTG</left_flank>
        <right_flank>TTTTTTTTGTCAAAACTTCGATTTTTTTAGACAGAATTAGCTAAAAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAAAAAATTTCGGAAAAAAAATATTTTTTTTTCTAATTCCCGCCCCTAAAAATCGATACTTTTAGCTGTAATTCGTCACCCGAAAAAGCCAAATTCCGGAAATCGAAAATGCGCAATTGTGAGACTATCGACAGGAGCGGAAGTTTGTGCCTATATTCCCAACGTTGGACACAATTTACAAGAGCATTCACAAGTAGGATTTGACTCCTTATTTTTTGAGAAAAGACCCCTATTTTTGTAGGTACTGGTTAAAGGAGGACGTCGACGAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGTTTTTTTTTGTCAAAACTTCGATTTTTTTAGACAGAATTAGCTAAAAATTTGAAATTTTTGTGAAATTTCTGACATTTTTGGACCCTGAATTGCCTTTTTATTCTGAAAATTCTGATTTTCAGGTTATTTTTCCAAAATTCGACGGTGGGCGGAGCTTAGAAATCCTTAAAGCATTTTCAGGCCTATTTTTTCAGATTTTCGATGGATTTAAACGGTTTTGAGATGTATTTTCAGACAAAAGTGCGAAAAATCGCGAAAAAAATTTGATAAAACAATGTAAATTACTTTAAAAAATCGAGAAAAATTGCCTAAAAACAATACAATTTTTTTTTGATTCTTCAAAAAAATTTCATTGTTTTTCGAATTTTTTTCTACAAAAATCGGAAGAATAGCAAAGAAAACTGCAAAAAAAGATAGAAATGATTGAAACATCGGGAAACATTGCTTTGAAAAAATCCGATTTTTCAATAAATTTCGTCACATTCGGCTTATTTTTGATA</canonical>
            <polymorphic>TTGAAAAAAATTTCGGAAAAAAAATATTTTTTTTTCTAATTCCCGCCCCTAAAAATCGATACTTTTAGCTGTAATTCGTCACCCGAAAAAGCCAAATTCCGGAAATCGAAAATGCGCAATTGTGAGACTATCGACAGGAGCGGAAGTTTGTGCCTATATTCCCAACGTTGGACACAATTTACAAGAGCATTCACAAGTAGGATTTGACTCCTTATTTTTTGAGAAAAGACCCCTATTTTTGTAGGTACTGGTTAAAGGAGGACGTCGACGAGACTTGATTTCGGTCAAAGCCAACATTGTGAGAGGAAAATTCGATTGCGCGCCAGCTGGAGGACGGAAATAATAAGCTGGAAATTCATAATTTTTAGGATTTAAACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGRTTTTTTTTGTCAAAACTTCGATTTTTTTAGACAGAATTAGCTAAAAATTTGAAATTTTTGTGAAATTTCTGACATTTTTGGACCCTGAATTGCCTTTTTATTCTGAAAATTCTGATTTTCAGGTTATTTTTCCAAAATTCGACGGTGGGCGGAGCTTAGAAATCCTTAAAGCATTTTCAGGCCTATTTTTTCAGATTTTCGATGGATTTAAACGGTTTTGAGATGTATTTTCAGACAAAAGTGCGAAAAATCGCGAAAAAAATTTGATAAAACAATGTAAATTACTTTAAAAAATCGAGAAAAATTGCCTAAAAACAATACAATTTTTTTTTGATTCTTCAAAAAAATTTCATTGTTTTTCGAATTTTTTTCTACAAAAATCGGAAGAATAGCAAAGAAAACTGCAAAAAAAGATAGAAATGATTGAAACATCGGGAAACATTGCTTTGAAAAAATCCGATTTTTCAATAAATTTCGTCACATTCGGCTTATTTTTGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTAGTTTTTCTTCTTGTTCTTCTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCAGAATAAAAAGGCAATTC</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>AACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGTTTTTTTTTGTCAAAACTTCGATTTTTTTAGACAGAATTAGCTAAAAATTTGAAATTTTTGTGAAATTTCTGACATTTTTGGACCCTGAATTGCCTTTTTATTCTGAAA</canonical_amplicon>
		<polymorphic_amplicon>AACTAGTTTTTCTTCTTGTTCTTCTTTTGTTTATTGTTCTCCGTTTATTGAAAAAATATTGATTTTTCGCTTTTTTTAAAAATATAATTGGGTCTTTATTCCCATATTTTATACTTGCTTTGCTGRTTTTTTTTGTCAAAACTTCGATTTTTTTAGACAGAATTAGCTAAAAATTTGAAATTTTTGTGAAATTTCTGACATTTTTGGACCCTGAATTGCCTTTTTATTCTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30551</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>200428</contig_pos>
        <strand>+</strand>
        <context>TTCCCGGCTA[A/G]TTTKAAAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAATGGTTAAATGTAAGTGTCTAAAAATCATTTAGTACTTCCCGGCTA</left_flank>
        <right_flank>TTTGAAAATTTCAGAGACTTTTCTAGTTCTACAAATACCATTAAACCTGT</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAATTAGTCATTTGAAGGAATTCCGATCATTTCTTTCTTCTTCGTGTCTCTATTCCTATTCGCTTGTCATCATCAATTACATGTTTTTTTGTTCTCAGTTCCCCTCCCTTTTCCAACCCATTACATATTGCGCTTCTTCACATTTTTGCCCTTTTCTATTTCTTCTTCCGGTCCTCCTCCTCATCTGTTTTATAATTCTGCCTAATGAAATTCCTCGAAAAAATTCGCGAAAAAGGAAATTATTGGAATCAGAAATTAGAACATCGAATTAGTTGTGGAATGTTGTACTTTTTGTGGGCGATCGTAAAACTGAATAGACTATCAGTTTCTTTTTTTTGTAGCATGATGACTTCTGTCTTCTGAATTCGTAGCATTTTTTGGGTGGGGCTTTTTTCTAGAGTTCACAAACCATACCTTTTTTGGCATATTTTAAATTTTGTTTTTAATTGAAAATGGTTAAATGTAAGTGTCTAAAAATCATTTAGTACTTCCCGGCTAGTTTGAAAATTTCAGAGACTTTTCTAGTTCTACAAATACCATTAAACCTGTAATAGAAAGGCAGCCCCAGTCGTCAGCTCTGAGCCAATATATCTCGCTTCCTTCGAATGATATCAAATAGTTGTTAACTATTAAATTGTTTATCATAATATAATAAACATTTTATCAGTTGGCAACTTTTTAATAGCTCTTATAGGAATCGAGATAATTGAGCTCAACGTTGACCGTACTTACTCTAATAGAAGTTCACCCAAACCTTCAACTTGGAGCTCAACTATCTCATTTCTTGTAAGAGATATCAAAAGGTTGTCAACTGATAAAATGTTTATCATAATATCACAAATATTTTATTAGTTAAAAGCTTCTCAATAGCTCCTATAGGAATCGAGATAATTGAGCTCAAAGTTAAGAGTTAGGGCCGCCCTCTACCGTACTTGCTCTAATAGAAGCCCACTCAAACCGTCAATCTTAAGCTTATATATCTTAGTTTCTGTAAGAGAT</canonical>
            <polymorphic>ATAATTAGTCATTTGAAGGAATTCCGATCATTTCTTTCTTCTTCGTGTCTCTATTCCTATTCGCTTGTCATCATCAATTACATGTTTTTTTGTTCTCAGTTCCCCTCCCTTTTCCAACCCATTACATATTGCGCTTCTTCACATTTTTGCCCTTTTCTATTTCTTCTTCCGGTCCTCCTCCTCATCTGTTTTATAATTCTGCCTAATGAAATTCCTCGAAAAAATTCGCGAAAAAGGAAATTATTGGAATCAGAAATTAGAACATCGAATTAGTTGTGGAATGTTGTACTTTTTGTGGGCGATCGTAAAACTGAATAGACTATCAGTTTCTTTTTTTTGTAGCATGATGACTTCTGTCTTCTGAATTCGTAGCATTTTTTGGGTGGGGCTTTTTTCTAGAGTTCACAAACCATACCTTTTTTGGCATATTTTAAATTTTGTTTTTAATTGAAAATGGTTAAATGTAAGTGTCTAAAAATCATTTAGTACTTCCCGGCTARTTTGAAAATTTCAGAGACTTTTCTAGTTCTACAAATACCATTAAACCTGTAATAGAAAGGCAGCCCCAGTCGTCAGCTCTGAGCCAATATATCTCGCTTCCTTCGAATGATATCAAATAGTTGTTAACTATTAAATTGTTTATCATAATATAATAAACATTTTATCAGTTGGCAACTTTTTAATAGCTCTTATAGGAATCGAGATAATTGAGCTCAACGTTGACCGTACTTACTCTAATAGAAGTTCACCCAAACCTTCAACTTGGAGCTCAACTATCTCATTTCTTGTAAGAGATATCAAAAGGTTGTCAACTGATAAAATGTTTATCATAATATCACAAATATTTTATTAGTTAAAAGCTTCTCAATAGCTCCTATAGGAATCGAGATAATTGAGCTCAAAGTTAAGAGTTAGGGCCGCCCTCTACCGTACTTGCTCTAATAGAAGCCCACTCAAACCGTCAATCTTAAGCTTATATATCTTAGTTTCTGTAAGAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>477 396 101 26</canonical_bands>
                <polymorphic_bands>477 396 127</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTCACAAACCATACCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CACATTCATGATGGTTTTCTATT</pcr_primer_p2>
		<pcr_amplicon_size>846</pcr_amplicon_size>
		<canonical_amplicon>AGTTCACAAACCATACCTTTTTTGGCATATTTTAAATTTTGTTTTTAATTGAAAATGGTTAAATGTAAGTGTCTAAAAATCATTTAGTACTTCCCGGCTAGTTTGAAAATTTCAGAGACTTTT</canonical_amplicon>
		<polymorphic_amplicon>AGTTCACAAACCATACCTTTTTTGGCATATTTTAAATTTTGTTTTTAATTGAAAATGGTTAAATGTAAGTGTCTAAAAATCATTTAGTACTTCCCGGCTARTTTGAAAATTTCAGAGACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30552</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>202254</contig_pos>
        <strand>+</strand>
        <context>TGAGTTTTTC[C/T]ATCTTTCAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGCTGGAGAAAATTGTGGTAGCGCAGAGAAATGAAATTGTGAGTTTTTC</left_flank>
        <right_flank>ATCTTTCAGCCATTATTCCAGTAATCCCATATCCAGGTTTTACTGCAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGTTATGTCTTCTATGCTTTTGTTTGGTCCTAGAGAGGATTAGAGACACACAAAAAACCTAACGTTGTGCATTTCAAAGTTTCAATTAAAGCTAAAAAGATAAAGAAGACGTTTCAAAAGGCGTCCTTTTCTTTCTAAAGCGTTCTTCAGAATCTCCATGAATCTCTAAGTATAGACTCATCCGAATGCATTTCTAAGCATAGAGAGAAAACTATTTATATTCTTCGGCTTCTTTTTACTTTTTGTCCCATTCTGCTCTAGAATGTTCAATGTTCCGGGTTTCTGTACTCTCCGGTCCCAGGTACAAACCCAACAGCCAAGGGGAGCCAATTTTTGTGAGTTTTAGATGATAACCCCTTCAATTTGAGAAGTATGAACTTCCAAAAGCGAAACTTCCAGATGAACTAATCCTATCTGAAAACGATCGTCTTCGAAGTCGAGTTGAGGAGCTGGAGAAAATTGTGGTAGCGCAGAGAAATGAAATTGTGAGTTTTTCCATCTTTCAGCCATTATTCCAGTAATCCCATATCCAGGTTTTACTGCAAAGCTCGACAGTGGAAATTCTGCGGCGCTTGCAAAATTTGGAGGTTCAGGAAAAGTCGAAATCCCCAGTGTCATCGGGATATAACTCTTGTAAGTTACTAATTCAAATTTTGGGACTTAAAGGACCCGTTTGACTATTAGTGAGGATCTTTCTTAGTGAGGAAATTTCTTAGTGATGAAAAAAATCCTCCCGAGTGAGATCCTCCTTGATAAAGATATTTTAGTAATGATTTTTCTCAATAAGAATCATCCTTAGTGAGAATCTTTCTTAGTAAGGACATCGCCATGAGGAACAGATCAGGGGTACAGCGCCGATACCGGCTGACTATTAGTGATAATATTTCTTATTGAGAAAATTTCTTAGTGAGGGTGTTTAATCAAAATCCAACTTTCCAGTACCCCGCCGAATCTCCGGCTCCAAAAGTACCTACTCTGTGAGCCCATCCTCTCAACA</canonical>
            <polymorphic>TTTTGTTATGTCTTCTATGCTTTTGTTTGGTCCTAGAGAGGATTAGAGACACACAAAAAACCTAACGTTGTGCATTTCAAAGTTTCAATTAAAGCTAAAAAGATAAAGAAGACGTTTCAAAAGGCGTCCTTTTCTTTCTAAAGCGTTCTTCAGAATCTCCATGAATCTCTAAGTATAGACTCATCCGAATGCATTTCTAAGCATAGAGAGAAAACTATTTATATTCTTCGGCTTCTTTTTACTTTTTGTCCCATTCTGCTCTAGAATGTTCAATGTTCCGGGTTTCTGTACTCTCCGGTCCCAGGTACAAACCCAACAGCCAAGGGGAGCCAATTTTTGTGAGTTTTAGATGATAACCCCTTCAATTTGAGAAGTATGAACTTCCAAAAGCGAAACTTCCAGATGAACTAATCCTATCTGAAAACGATCGTCTTCGAAGTCGAGTTGAGGAGCTGGAGAAAATTGTGGTAGCGCAGAGAAATGAAATTGTGAGTTTTTCYATCTTTCAGCCATTATTCCAGTAATCCCATATCCAGGTTTTACTGCAAAGCTCGACAGTGGAAATTCTGCGGCGCTTGCAAAATTTGGAGGTTCAGGAAAAGTCGAAATCCCCAGTGTCATCGGGATATAACTCTTGTAAGTTACTAATTCAAATTTTGGGACTTAAAGGACCCGTTTGACTATTAGTGAGGATCTTTCTTAGTGAGGAAATTTCTTAGTGATGAAAAAAATCCTCCCGAGTGAGATCCTCCTTGATAAAGATATTTTAGTAATGATTTTTCTCAATAAGAATCATCCTTAGTGAGAATCTTTCTTAGTAAGGACATCGCCATGAGGAACAGATCAGGGGTACAGCGCCGATACCGGCTGACTATTAGTGATAATATTTCTTATTGAGAAAATTTCTTAGTGAGGGTGTTTAATCAAAATCCAACTTTCCAGTACCCCGCCGAATCTCCGGCTCCAAAAGTACCTACTCTGTGAGCCCATCCTCTCAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTTCCAGATGAACTAATCCT</pcr_primer_p1>
		<pcr_primer_p2>TTACAAGAGTTATATCCCGATGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAACTTCCAGATGAACTAATCCTATCTGAAAACGATCGTCTTCGAAGTCGAGTTGAGGAGCTGGAGAAAATTGTGGTAGCGCAGAGAAATGAAATTGTGAGTTTTTCCATCTTTCAGCCATTATTCCAGTAATCCCATATCCAGGTTTTACTGCAAAGCTCGACAGTGGAAATTCTGCGGCGCTTGCAAAATTTGGAGGTTCAGGAAAAGTCGAAATCCCCAGTGTCATCGGGATATAACTCTTGTAA</canonical_amplicon>
		<polymorphic_amplicon>AAACTTCCAGATGAACTAATCCTATCTGAAAACGATCGTCTTCGAAGTCGAGTTGAGGAGCTGGAGAAAATTGTGGTAGCGCAGAGAAATGAAATTGTGAGTTTTTCYATCTTTCAGCCATTATTCCAGTAATCCCATATCCAGGTTTTACTGCAAAGCTCGACAGTGGAAATTCTGCGGCGCTTGCAAAATTTGGAGGTTCAGGAAAAGTCGAAATCCCCAGTGTCATCGGGATATAACTCTTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30553</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>254927</contig_pos>
        <strand>+</strand>
        <context>CAGAAAAAAT[A/T]GAAATTTGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTAGGGGAATAATTTGAGACTTTTTTATAACTTCATAGCAGAAAAAAT</left_flank>
        <right_flank>GAAATTTGATATGTATTTTCCGGCGGGGTCTTCAAGAGACTGATAAGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAACATTTTTTCAAGTCAATTTTGAGCTCAATTATCTTAGCTCCTTCAAAAGATATCTGAAATCTGTTCACTGATAAAAGATAGCTTATAATATGATAAACAATTCATCAGTGAACAAAGTTTTGATATCTTTCAAAGGAACCGAGATAATTGAGCTCAAAATTTTAAAGTGGGCTTCTAGAAGAGGATATATTGCTTATAAATTGCTTGATTGCTTCCTTTTCTCTACAGCAAACGACTTTTTTTCCATAAAAACGTTTTCCTTCTCTATTTTTCTTCTTTTCCTGTTAACTATATGTCAAAGTTTCAAAAGTACTAACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATATCTTTTCTTTGTCCAAATTTCGTAATAATCCTTTTCATGATGTCATATTTAGCGGAACGGAAATTTCTCCTATATTTTGGTGATTGATGTCTTTTAGGGGAATAATTTGAGACTTTTTTATAACTTCATAGCAGAAAAAATAGAAATTTGATATGTATTTTCCGGCGGGGTCTTCAAGAGACTGATAAGGAAATAGTAACCCTTGGTCTCTTCCGTAATAATACAAAAATTAAATAAAAAACTTTAAATTAGGACTATGGACCGGAAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCCCGTAGAAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAAAAAAGAAGGAGAATCTTCTGAAAAATTCTGAAATATTTTAGTTTTCCCTTTTTTTAAAGTTTAATTAAATTTCCACAAATTACACATCCTTTTTTAAAGCCGATTTATCTCGATTACTGTAAAAGCTATCAAAAATTTGTCAACTGATAAAATGTTCCTGACATTATGATAAATATTTTATCAGTTGACGAATATTTGATATCTTTTACAGGAAATCAGATAGCAGAGCTTAAAGTTGACGATTTGAAAGGCATACTATTAGCGTGTTTACCGGCGGAGTACTCTGCAAAACAATGT</canonical>
            <polymorphic>GAAAACATTTTTTCAAGTCAATTTTGAGCTCAATTATCTTAGCTCCTTCAAAAGATATCTGAAATCTGTTCACTGATAAAAGATAGCTTATAATATGATAAACAATTCATCAGTGAACAAAGTTTTGATATCTTTCAAAGGAACCGAGATAATTGAGCTCAAAATTTTAAAGTGGGCTTCTAGAAGAGGATATATTGCTTATAAATTGCTTGATTGCTTCCTTTTCTCTACAGCAAACGACTTTTTTTCCATAAAAACGTTTTCCTTCTCTATTTTTCTTCTTTTCCTGTTAACTATATGTCAAAGTTTCAAAAGTACTAACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATATCTTTTCTTTGTCCAAATTTCGTAATAATCCTTTTCATGATGTCATATTTAGCGGAACGGAAATTTCTCCTATATTTTGGTGATTGATGTCTTTTAGGGGAATAATTTGAGACTTTTTTATAACTTCATAGCAGAAAAAATWGAAATTTGATATGTATTTTCCGGCGGGGTCTTCAAGAGACTGATAAGGAAATAGTAACCCTTGGTCTCTTCCGTAATAATACAAAAATTAAATAAAAAACTTTAAATTAGGACTATGGACCGGAAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCCCGTAGAAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAAAAAAGAAGGAGAATCTTCTGAAAAATTCTGAAATATTTTAGTTTTCCCTTTTTTTAAAGTTTAATTAAATTTCCACAAATTACACATCCTTTTTTAAAGCCGATTTATCTCGATTACTGTAAAAGCTATCAAAAATTTGTCAACTGATAAAATGTTCCTGACATTATGATAAATATTTTATCAGTTGACGAATATTTGATATCTTTTACAGGAAATCAGATAGCAGAGCTTAAAGTTGACGATTTGAAAGGCATACTATTAGCGTGTTTACCGGCGGAGTACTCTGCAAAACAATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTAACCCGATATTGATATTTTG</pcr_primer_p1>
		<pcr_primer_p2>CCAAGGGTTACTATTTCCTTATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACTAACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATATCTTTTCTTTGTCCAAATTTCGTAATAATCCTTTTCATGATGTCATATTTAGCGGAACGGAAATTTCTCCTATATTTTGGTGATTGATGTCTTTTAGGGGAATAATTTGAGACTTTTTTATAACTTCATAGCAGAAAAAATAGAAATTTGATATGTATTTTCCGGCGGGGTCTTCAAGAGACTGATAAGGAAATAGTAACCCTTGG</canonical_amplicon>
		<polymorphic_amplicon>ACTAACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATATCTTTTCTTTGTCCAAATTTCGTAATAATCCTTTTCATGATGTCATATTTAGCGGAACGGAAATTTCTCCTATATTTTGGTGATTGATGTCTTTTAGGGGAATAATTTGAGACTTTTTTATAACTTCATAGCAGAAAAAATWGAAATTTGATATGTATTTTCCGGCGGGGTCTTCAAGAGACTGATAAGGAAATAGTAACCCTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30554</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>255007</contig_pos>
        <strand></strand>
        <context>TCCGtaataa[T/C]acaaaaatta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTTCAAGAGACTGATAAGGAAATAGTAACCCTTGGTCTCTTCCGTAATAA</left_flank>
        <right_flank>ACAAAAATTAAATAAAAAACTTTAAATTAGGACTATGGACCGGAAAGTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATAGCTTATAATATGATAAACAATTCATCAGTGAACAAAGTTTTGATATCTTTCAAAGGAACCGAGATAATTGAGCTCAAAATTTTAAAGTGGGCTTCTAGAAGAGGATATATTGCTTATAAATTGCTTGATTGCTTCCTTTTCTCTACAGCAAACGACTTTTTTTCCATAAAAACGTTTTCCTTCTCTATTTTTCTTCTTTTCCTGTTAACTATATGTCAAAGTTTCAAAAGTACTAACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATATCTTTTCTTTGTCCAAATTTCGTAATAATCCTTTTCATGATGTCATATTTAGCGGAACGGAAATTTCTCCTATATTTTGGTGATTGATGTCTTTTAGGGGAATAATTTGAGACTTTTTTATAACTTCATAGCAGAAAAAATAGAAATTTGATATGTATTTTCCGGCGGGGTCTTCAAGAGACTGATAAGGAAATAGTAACCCTTGGTCTCTTCCGTAATAATACAAAAATTAAATAAAAAACTTTAAATTAGGACTATGGACCGGAAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCCCGTAGAAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAAAAAAGAAGGAGAATCTTCTGAAAAATTCTGAAATATTTTAGTTTTCCCTTTTTTTAAAGTTTAATTAAATTTCCACAAATTACACATCCTTTTTTAAAGCCGATTTATCTCGATTACTGTAAAAGCTATCAAAAATTTGTCAACTGATAAAATGTTCCTGACATTATGATAAATATTTTATCAGTTGACGAATATTTGATATCTTTTACAGGAAATCAGATAGCAGAGCTTAAAGTTGACGATTTGAAAGGCATACTATTAGCGTGTTTACCGGCGGAGTACTCTGCAAAACAATGTTCTAGGTACTTTAACTAGTCAGAAACCATTTCCATGCTCAGTGGTCGCTAGGAAGGGATGGAAGAAAAAGACAAACACTA</canonical>
            <polymorphic>AGATAGCTTATAATATGATAAACAATTCATCAGTGAACAAAGTTTTGATATCTTTCAAAGGAACCGAGATAATTGAGCTCAAAATTTTAAAGTGGGCTTCTAGAAGAGGATATATTGCTTATAAATTGCTTGATTGCTTCCTTTTCTCTACAGCAAACGACTTTTTTTCCATAAAAACGTTTTCCTTCTCTATTTTTCTTCTTTTCCTGTTAACTATATGTCAAAGTTTCAAAAGTACTAACCCGATATTGATATTTTGGTGGTTTTGGTGTTCTATATCTTTTCTTTGTCCAAATTTCGTAATAATCCTTTTCATGATGTCATATTTAGCGGAACGGAAATTTCTCCTATATTTTGGTGATTGATGTCTTTTAGGGGAATAATTTGAGACTTTTTTATAACTTCATAGCAGAAAAAATAGAAATTTGATATGTATTTTCCGGCGGGGTCTTCAAGAGACTGATAAGGAAATAGTAACCCTTGGTCTCTTCCGTAATAAYACAAAAATTAAATAAAAAACTTTAAATTAGGACTATGGACCGGAAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCCCGTAGAAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAAAAAAGAAGGAGAATCTTCTGAAAAATTCTGAAATATTTTAGTTTTCCCTTTTTTTAAAGTTTAATTAAATTTCCACAAATTACACATCCTTTTTTAAAGCCGATTTATCTCGATTACTGTAAAAGCTATCAAAAATTTGTCAACTGATAAAATGTTCCTGACATTATGATAAATATTTTATCAGTTGACGAATATTTGATATCTTTTACAGGAAATCAGATAGCAGAGCTTAAAGTTGACGATTTGAAAGGCATACTATTAGCGTGTTTACCGGCGGAGTACTCTGCAAAACAATGTTCTAGGTACTTTAACTAGTCAGAAACCATTTCCATGCTCAGTGGTCGCTAGGAAGGGATGGAAGAAAAAGACAAACACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGGGGAATAATTTGAGACTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGTCAAATTCCTTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTAGGGGAATAATTTGAGACTTTTTTATAACTTCATAGCAGAAAAAATAGAAATTTGATATGTATTTTCCGGCGGGGTCTTCAAGAGACTGATAAGGAAATAGTAACCCTTGGTCTCTTCCGTAATAATACAAAAATTAAATAAAAAACTTTAAATTAGGACTATGGACCGGAAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCCCGTAGAAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAA</canonical_amplicon>
		<polymorphic_amplicon>TTAGGGGAATAATTTGAGACTTTTTTATAACTTCATAGCAGAAAAAATAGAAATTTGATATGTATTTTCCGGCGGGGTCTTCAAGAGACTGATAAGGAAATAGTAACCCTTGGTCTCTTCCGTAATAAYACAAAAATTAAATAAAAAACTTTAAATTAGGACTATGGACCGGAAAGTTCTCTATTATAGTAATAGTGAAATTTGAGTCCCGTAGAAAATCGAGTTTTCAGTTTTTTGAAGGAATTTGACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30555</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>255777</contig_pos>
        <strand></strand>
        <context>GCTGAagaga[G/A]agagagagag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AACAACGTTTTGGGAGGCGAATAAGATGGTAAGAGCTTTGGCTGAAGAGA</left_flank>
        <right_flank>AGAGAGAGAGAGAGAGAGAGAGAGAGAGCATGGCGCCCTTTGGAGACGCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAATGTTCCTGACATTATGATAAATATTTTATCAGTTGACGAATATTTGATATCTTTTACAGGAAATCAGATAGCAGAGCTTAAAGTTGACGATTTGAAAGGCATACTATTAGCGTGTTTACCGGCGGAGTACTCTGCAAAACAATGTTCTAGGTACTTTAACTAGTCAGAAACCATTTCCATGCTCAGTGGTCGCTAGGAAGGGATGGAAGAAAAAGACAAACACTATTCTTTGTTGTTGTTGTTTTTTTTTGTTCGTTTCTTTTTCTATTTGTCCGAGTCAGTCCGACCCCCTAGACATTCGGACTCAGTCATATCTCTCATTCTTGTTTGGATGTTCTTTTTTTATCCCAAAATTGCTCAGTTTTTTTTTCCAATTTTTCTACTTTTGTTGTAGAAAAACTCACAAAATATGGCATTCACCGGACTCAACTGGGATCATGTGAAAACAACGTTTTGGGAGGCGAATAAGATGGTAAGAGCTTTGGCTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATGGCGCCCTTTGGAGACGCAGAGAGGCTAGACAAGTAAACAACGGCAAAAACATTATGAAAGGCATAGAACGTCAAGCGAAATGATCACTGGTGTCTTATATTGAAATAAGGGGTGTTGTTGGGGGTATAGAGGACAAAATGTGTCACTGACTGTCCTGTTGTTTTCTCCATTTTTGGTTGGTTGTTTGGTGTTTTTGCGTTTTTTGGGCTTTTGAAATGTTGAAAATATGACTTTTCAGGCTTTTCGAAATTATTTTGTGGATTTTTGAAATGATATAACAAACCTGAAAATACCAGACCATGGTCTCTCACAGAACGAATACGAACTGCATGTTTAATTGCGATCTATCATAAAAAATTTGGTGTGACAGGTTTGATTTTATAGAGATTCAAGATGATTCGATAGATTCATATGGTCCTTTTCCGGGATTTCGAAAAACCTCATTTTCAAAGTTTTTGTATGGACAAA</canonical>
            <polymorphic>TAAAATGTTCCTGACATTATGATAAATATTTTATCAGTTGACGAATATTTGATATCTTTTACAGGAAATCAGATAGCAGAGCTTAAAGTTGACGATTTGAAAGGCATACTATTAGCGTGTTTACCGGCGGAGTACTCTGCAAAACAATGTTCTAGGTACTTTAACTAGTCAGAAACCATTTCCATGCTCAGTGGTCGCTAGGAAGGGATGGAAGAAAAAGACAAACACTATTCTTTGTTGTTGTTGTTTTTTTTTGTTCGTTTCTTTTTCTATTTGTCCGAGTCAGTCCGACCCCCTAGACATTCGGACTCAGTCATATCTCTCATTCTTGTTTGGATGTTCTTTTTTTATCCCAAAATTGCTCAGTTTTTTTTTCCAATTTTTCTACTTTTGTTGTAGAAAAACTCACAAAATATGGCATTCACCGGACTCAACTGGGATCATGTGAAAACAACGTTTTGGGAGGCGAATAAGATGGTAAGAGCTTTGGCTGAAGAGARAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATGGCGCCCTTTGGAGACGCAGAGAGGCTAGACAAGTAAACAACGGCAAAAACATTATGAAAGGCATAGAACGTCAAGCGAAATGATCACTGGTGTCTTATATTGAAATAAGGGGTGTTGTTGGGGGTATAGAGGACAAAATGTGTCACTGACTGTCCTGTTGTTTTCTCCATTTTTGGTTGGTTGTTTGGTGTTTTTGCGTTTTTTGGGCTTTTGAAATGTTGAAAATATGACTTTTCAGGCTTTTCGAAATTATTTTGTGGATTTTTGAAATGATATAACAAACCTGAAAATACCAGACCATGGTCTCTCACAGAACGAATACGAACTGCATGTTTAATTGCGATCTATCATAAAAAATTTGGTGTGACAGGTTTGATTTTATAGAGATTCAAGATGATTCGATAGATTCATATGGTCCTTTTCCGGGATTTCGAAAAACCTCATTTTCAAAGTTTTTGTATGGACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTGTTTGGATGTTCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTACTTGTCTAGCCTCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTGTTTGGATGTTCTTTTTTTATCCCAAAATTGCTCAGTTTTTTTTTCCAATTTTTCTACTTTTGTTGTAGAAAAACTCACAAAATATGGCATTCACCGGACTCAACTGGGATCATGTGAAAACAACGTTTTGGGAGGCGAATAAGATGGTAAGAGCTTTGGCTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATGGCGCCCTTTGGAGACGCAGAGAGGCTAGACAAGTAAACA</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTGTTTGGATGTTCTTTTTTTATCCCAAAATTGCTCAGTTTTTTTTTCCAATTTTTCTACTTTTGTTGTAGAAAAACTCACAAAATATGGCATTCACCGGACTCAACTGGGATCATGTGAAAACAACGTTTTGGGAGGCGAATAAGATGGTAAGAGCTTTGGCTGAAGAGARAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATGGCGCCCTTTGGAGACGCAGAGAGGCTAGACAAGTAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30556</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>256103</contig_pos>
        <strand>+</strand>
        <context>CTGAAAATAC[C/T]AGACCATGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGAAATTATTTTGTGGATTTTTGAAATGATATAACAAACCTGAAAATAC</left_flank>
        <right_flank>AGACCATGGTCTCTCACAGAACGAATACGAACTGCATGTTTAATTGCGAT</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTGTTTGGATGTTCTTTTTTTATCCCAAAATTGCTCAGTTTTTTTTTCCAATTTTTCTACTTTTGTTGTAGAAAAACTCACAAAATATGGCATTCACCGGACTCAACTGGGATCATGTGAAAACAACGTTTTGGGAGGCGAATAAGATGGTAAGAGCTTTGGCTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATGGCGCCCTTTGGAGACGCAGAGAGGCTAGACAAGTAAACAACGGCAAAAACATTATGAAAGGCATAGAACGTCAAGCGAAATGATCACTGGTGTCTTATATTGAAATAAGGGGTGTTGTTGGGGGTATAGAGGACAAAATGTGTCACTGACTGTCCTGTTGTTTTCTCCATTTTTGGTTGGTTGTTTGGTGTTTTTGCGTTTTTTGGGCTTTTGAAATGTTGAAAATATGACTTTTCAGGCTTTTCGAAATTATTTTGTGGATTTTTGAAATGATATAACAAACCTGAAAATACCAGACCATGGTCTCTCACAGAACGAATACGAACTGCATGTTTAATTGCGATCTATCATAAAAAATTTGGTGTGACAGGTTTGATTTTATAGAGATTCAAGATGATTCGATAGATTCATATGGTCCTTTTCCGGGATTTCGAAAAACCTCATTTTCAAAGTTTTTGTATGGACAAACTTTTGATTCTGAATTTCTGAGTTTCTGAGTTTCTGAATTTTTGAATTTTCGAATTTCTGAATTCACGAATTTTTGAATTTCTGAATTTCCGAGTTTCTGAATTTTTGAATTTTCGAATTTCTGAATTCACGAATTTTTGAATTTCTGAATTCACGAATTTCTTATTTTCTGAATTTTTGAATTTCTGAATTTCCGAGTTTCTGAATTTTTGTATTCCTGAATTTCCGAGTATCTAAATTTTCGAACTTCGGAATATCTGAATTTTGAAATTTCCGAGTTATTGAATTTTTGATTTTTCGAATTCATGAATTTTTGAATTTCTGAA</canonical>
            <polymorphic>TCTTGTTTGGATGTTCTTTTTTTATCCCAAAATTGCTCAGTTTTTTTTTCCAATTTTTCTACTTTTGTTGTAGAAAAACTCACAAAATATGGCATTCACCGGACTCAACTGGGATCATGTGAAAACAACGTTTTGGGAGGCGAATAAGATGGTAAGAGCTTTGGCTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATGGCGCCCTTTGGAGACGCAGAGAGGCTAGACAAGTAAACAACGGCAAAAACATTATGAAAGGCATAGAACGTCAAGCGAAATGATCACTGGTGTCTTATATTGAAATAAGGGGTGTTGTTGGGGGTATAGAGGACAAAATGTGTCACTGACTGTCCTGTTGTTTTCTCCATTTTTGGTTGGTTGTTTGGTGTTTTTGCGTTTTTTGGGCTTTTGAAATGTTGAAAATATGACTTTTCAGGCTTTTCGAAATTATTTTGTGGATTTTTGAAATGATATAACAAACCTGAAAATACYAGACCATGGTCTCTCACAGAACGAATACGAACTGCATGTTTAATTGCGATCTATCATAAAAAATTTGGTGTGACAGGTTTGATTTTATAGAGATTCAAGATGATTCGATAGATTCATATGGTCCTTTTCCGGGATTTCGAAAAACCTCATTTTCAAAGTTTTTGTATGGACAAACTTTTGATTCTGAATTTCTGAGTTTCTGAGTTTCTGAATTTTTGAATTTTCGAATTTCTGAATTCACGAATTTTTGAATTTCTGAATTTCCGAGTTTCTGAATTTTTGAATTTTCGAATTTCTGAATTCACGAATTTTTGAATTTCTGAATTCACGAATTTCTTATTTTCTGAATTTTTGAATTTCTGAATTTCCGAGTTTCTGAATTTTTGTATTCCTGAATTTCCGAGTATCTAAATTTTCGAACTTCGGAATATCTGAATTTTGAAATTTCCGAGTTATTGAATTTTTGATTTTTCGAATTCATGAATTTTTGAATTTCTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNTGG</site>
                <isoschizomers>
                    <enzyme>AccB7I</enzyme>
                    <enzyme>PflBI</enzyme>
                    <enzyme>PflMI</enzyme>
                    <enzyme>Van91I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>505 371 124</canonical_bands>
                <polymorphic_bands>629 371</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATGTGTCACTGACTGTCCT</pcr_primer_p1>
		<pcr_primer_p2>TATAAAATCAAACCTGTCACACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAATGTGTCACTGACTGTCCTGTTGTTTTCTCCATTTTTGGTTGGTTGTTTGGTGTTTTTGCGTTTTTTGGGCTTTTGAAATGTTGAAAATATGACTTTTCAGGCTTTTCGAAATTATTTTGTGGATTTTTGAAATGATATAACAAACCTGAAAATACCAGACCATGGTCTCTCACAGAACGAATACGAACTGCATGTTTAATTGCGATCTATCATAAAAAATTTGGTGTGACAGGTTTGATTTTATA</canonical_amplicon>
		<polymorphic_amplicon>AAAATGTGTCACTGACTGTCCTGTTGTTTTCTCCATTTTTGGTTGGTTGTTTGGTGTTTTTGCGTTTTTTGGGCTTTTGAAATGTTGAAAATATGACTTTTCAGGCTTTTCGAAATTATTTTGTGGATTTTTGAAATGATATAACAAACCTGAAAATACYAGACCATGGTCTCTCACAGAACGAATACGAACTGCATGTTTAATTGCGATCTATCATAAAAAATTTGGTGTGACAGGTTTGATTTTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30557</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>256115</contig_pos>
        <strand>+</strand>
        <context>GACCATGGTC[G/T]CTCACAGAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTGGATTTTTGAAATGATATAACAAACCTGAAAATACCAGACCATGGTC</left_flank>
        <right_flank>CTCACAGAACGAATACGAACTGCATGTTTAATTGCGATCTATCATAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCTTTTTTTATCCCAAAATTGCTCAGTTTTTTTTTCCAATTTTTCTACTTTTGTTGTAGAAAAACTCACAAAATATGGCATTCACCGGACTCAACTGGGATCATGTGAAAACAACGTTTTGGGAGGCGAATAAGATGGTAAGAGCTTTGGCTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATGGCGCCCTTTGGAGACGCAGAGAGGCTAGACAAGTAAACAACGGCAAAAACATTATGAAAGGCATAGAACGTCAAGCGAAATGATCACTGGTGTCTTATATTGAAATAAGGGGTGTTGTTGGGGGTATAGAGGACAAAATGTGTCACTGACTGTCCTGTTGTTTTCTCCATTTTTGGTTGGTTGTTTGGTGTTTTTGCGTTTTTTGGGCTTTTGAAATGTTGAAAATATGACTTTTCAGGCTTTTCGAAATTATTTTGTGGATTTTTGAAATGATATAACAAACCTGAAAATACCAGACCATGGTCTCTCACAGAACGAATACGAACTGCATGTTTAATTGCGATCTATCATAAAAAATTTGGTGTGACAGGTTTGATTTTATAGAGATTCAAGATGATTCGATAGATTCATATGGTCCTTTTCCGGGATTTCGAAAAACCTCATTTTCAAAGTTTTTGTATGGACAAACTTTTGATTCTGAATTTCTGAGTTTCTGAGTTTCTGAATTTTTGAATTTTCGAATTTCTGAATTCACGAATTTTTGAATTTCTGAATTTCCGAGTTTCTGAATTTTTGAATTTTCGAATTTCTGAATTCACGAATTTTTGAATTTCTGAATTCACGAATTTCTTATTTTCTGAATTTTTGAATTTCTGAATTTCCGAGTTTCTGAATTTTTGTATTCCTGAATTTCCGAGTATCTAAATTTTCGAACTTCGGAATATCTGAATTTTGAAATTTCCGAGTTATTGAATTTTTGATTTTTCGAATTCATGAATTTTTGAATTTCTGAAAATACTGAATTT</canonical>
            <polymorphic>GTTCTTTTTTTATCCCAAAATTGCTCAGTTTTTTTTTCCAATTTTTCTACTTTTGTTGTAGAAAAACTCACAAAATATGGCATTCACCGGACTCAACTGGGATCATGTGAAAACAACGTTTTGGGAGGCGAATAAGATGGTAAGAGCTTTGGCTGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCATGGCGCCCTTTGGAGACGCAGAGAGGCTAGACAAGTAAACAACGGCAAAAACATTATGAAAGGCATAGAACGTCAAGCGAAATGATCACTGGTGTCTTATATTGAAATAAGGGGTGTTGTTGGGGGTATAGAGGACAAAATGTGTCACTGACTGTCCTGTTGTTTTCTCCATTTTTGGTTGGTTGTTTGGTGTTTTTGCGTTTTTTGGGCTTTTGAAATGTTGAAAATATGACTTTTCAGGCTTTTCGAAATTATTTTGTGGATTTTTGAAATGATATAACAAACCTGAAAATACCAGACCATGGTCKCTCACAGAACGAATACGAACTGCATGTTTAATTGCGATCTATCATAAAAAATTTGGTGTGACAGGTTTGATTTTATAGAGATTCAAGATGATTCGATAGATTCATATGGTCCTTTTCCGGGATTTCGAAAAACCTCATTTTCAAAGTTTTTGTATGGACAAACTTTTGATTCTGAATTTCTGAGTTTCTGAGTTTCTGAATTTTTGAATTTTCGAATTTCTGAATTCACGAATTTTTGAATTTCTGAATTTCCGAGTTTCTGAATTTTTGAATTTTCGAATTTCTGAATTCACGAATTTTTGAATTTCTGAATTCACGAATTTCTTATTTTCTGAATTTTTGAATTTCTGAATTTCCGAGTTTCTGAATTTTTGTATTCCTGAATTTCCGAGTATCTAAATTTTCGAACTTCGGAATATCTGAATTTTGAAATTTCCGAGTTATTGAATTTTTGATTTTTCGAATTCATGAATTTTTGAATTTCTGAAAATACTGAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATGTGTCACTGACTGTCCT</pcr_primer_p1>
		<pcr_primer_p2>TATAAAATCAAACCTGTCACACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAATGTGTCACTGACTGTCCTGTTGTTTTCTCCATTTTTGGTTGGTTGTTTGGTGTTTTTGCGTTTTTTGGGCTTTTGAAATGTTGAAAATATGACTTTTCAGGCTTTTCGAAATTATTTTGTGGATTTTTGAAATGATATAACAAACCTGAAAATACCAGACCATGGTCTCTCACAGAACGAATACGAACTGCATGTTTAATTGCGATCTATCATAAAAAATTTGGTGTGACAGGTTTGATTTTATA</canonical_amplicon>
		<polymorphic_amplicon>AAAATGTGTCACTGACTGTCCTGTTGTTTTCTCCATTTTTGGTTGGTTGTTTGGTGTTTTTGCGTTTTTTGGGCTTTTGAAATGTTGAAAATATGACTTTTCAGGCTTTTCGAAATTATTTTGTGGATTTTTGAAATGATATAACAAACCTGAAAATACCAGACCATGGTCKCTCACAGAACGAATACGAACTGCATGTTTAATTGCGATCTATCATAAAAAATTTGGTGTGACAGGTTTGATTTTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30558</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>258809</contig_pos>
        <strand>+</strand>
        <context>TTTAGAATAT[A/T]CGAACATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGGAATTCACGAATTTCAGATTTTATAGAACTTTTGGATATTTAGAATAT</left_flank>
        <right_flank>CGAACATTTTTTTTAATTGAAGAATATAAGAATTTCAAAATTTTCGATTT</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACGGAAAACTAAAACGGAAACGGAAATTTCCAATTTTTTGTCTATTTTTCCGGATTTTTTTTCCCATCAAACATGAATTTAATGGTTGAAGACTATAATTGTCTCACTTTTCATGCTTTTTTCGAGCCAGTTTCAGTTCGATGTTTTCGTCAACTTTTACATGTTTTTTTCCGTGCAGTCTTCAAACGTTAAATTCATGTTTGATGGGGAAAAAAATCCGGAAAAATAGACGAAAAATTGGAAATTTCTGTTTCCGTTTTAGTTTTCCGTTTTCCGTTTTCCGCCCGATTCTTGAAGATTTTTTCCGTTTCCGTTTTCCGCGGAAGAAATTCCCCTTTCCGTTTCCGTATTTTGGGAAAATGCGTTTCCTCCCATCACTGATATATGGTACTGTATTGTTTTTTATTTAACTAAACAATTGTCAAACTTTCGGAATTTTCAGAAATTTGGAATTCACGAATTTCAGATTTTATAGAACTTTTGGATATTTAGAATATACGAACATTTTTTTTAATTGAAGAATATAAGAATTTCAAAATTTTCGATTTTTAAGAATTTTAGAATTCCAGAATCTCGGAATTTCGGAATTTGAGAATTTTCGGAACTTTAGGATTTTAAGATCTTCCAGAACTTCTGTAATTTTAGAATTGTATAGTTTTCGGAATTTCTGAGCATTAAAGTCATATATCTTACCATGCATAGCGCTATATATTCCACTATATATTTCGCTATATATGGTACTATATATGACATTTCAGAAGCTCACTGAGGAGCAAGCGTTGAGAGCACAAGAGAACTCGCCACACCAACACAAGCATCACGATTCGAGAGAAGAGAGATTGACGAAGAACGAGTTGACGGATAATGAGGATCAGAAGAAGAAGAAGGAGAGAGAGTACTGAAAAACAGATTTACCGTAAAACCTGTAATAGAAGGGCCCTCTAACTGTTGACTTTGAGCCAGATTATCTTGGTTCTTGTCAGAGATATCAAGAAGTT</canonical>
            <polymorphic>AAACGGAAAACTAAAACGGAAACGGAAATTTCCAATTTTTTGTCTATTTTTCCGGATTTTTTTTCCCATCAAACATGAATTTAATGGTTGAAGACTATAATTGTCTCACTTTTCATGCTTTTTTCGAGCCAGTTTCAGTTCGATGTTTTCGTCAACTTTTACATGTTTTTTTCCGTGCAGTCTTCAAACGTTAAATTCATGTTTGATGGGGAAAAAAATCCGGAAAAATAGACGAAAAATTGGAAATTTCTGTTTCCGTTTTAGTTTTCCGTTTTCCGTTTTCCGCCCGATTCTTGAAGATTTTTTCCGTTTCCGTTTTCCGCGGAAGAAATTCCCCTTTCCGTTTCCGTATTTTGGGAAAATGCGTTTCCTCCCATCACTGATATATGGTACTGTATTGTTTTTTATTTAACTAAACAATTGTCAAACTTTCGGAATTTTCAGAAATTTGGAATTCACGAATTTCAGATTTTATAGAACTTTTGGATATTTAGAATATWCGAACATTTTTTTTAATTGAAGAATATAAGAATTTCAAAATTTTCGATTTTTAAGAATTTTAGAATTCCAGAATCTCGGAATTTCGGAATTTGAGAATTTTCGGAACTTTAGGATTTTAAGATCTTCCAGAACTTCTGTAATTTTAGAATTGTATAGTTTTCGGAATTTCTGAGCATTAAAGTCATATATCTTACCATGCATAGCGCTATATATTCCACTATATATTTCGCTATATATGGTACTATATATGACATTTCAGAAGCTCACTGAGGAGCAAGCGTTGAGAGCACAAGAGAACTCGCCACACCAACACAAGCATCACGATTCGAGAGAAGAGAGATTGACGAAGAACGAGTTGACGGATAATGAGGATCAGAAGAAGAAGAAGGAGAGAGAGTACTGAAAAACAGATTTACCGTAAAACCTGTAATAGAAGGGCCCTCTAACTGTTGACTTTGAGCCAGATTATCTTGGTTCTTGTCAGAGATATCAAGAAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAACTAAACAATTGTCAAACTTTC</pcr_primer_p1>
		<pcr_primer_p2>TGCATGGTAAGATATATGACTTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>294</pcr_amplicon_size>
		<canonical_amplicon>TTTAACTAAACAATTGTCAAACTTTCGGAATTTTCAGAAATTTGGAATTCACGAATTTCAGATTTTATAGAACTTTTGGATATTTAGAATATACGAACATTTTTTTTAATTGAAGAATATAAGAATTTCAAAATTTTCGATTTTTAAGAATTTTAGAATTCCAGAATCTCGGAATTTCGGAATTTGAGAATTTTCGGAACTTTAGGATTTTAAGATCTTCCAGAACTTCTGTAATTTTAGAATTGTATAGTTTTCGGAATTTCTGAGCATTAAAGTCATATATCTTACCATGCA</canonical_amplicon>
		<polymorphic_amplicon>TTTAACTAAACAATTGTCAAACTTTCGGAATTTTCAGAAATTTGGAATTCACGAATTTCAGATTTTATAGAACTTTTGGATATTTAGAATATWCGAACATTTTTTTTAATTGAAGAATATAAGAATTTCAAAATTTTCGATTTTTAAGAATTTTAGAATTCCAGAATCTCGGAATTTCGGAATTTGAGAATTTTCGGAACTTTAGGATTTTAAGATCTTCCAGAACTTCTGTAATTTTAGAATTGTATAGTTTTCGGAATTTCTGAGCATTAAAGTCATATATCTTACCATGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30559</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>258850</contig_pos>
        <strand></strand>
        <context>aatttcaaaa[T/A]tttcgatttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTAGAATATACGAACATTTTTTTTAATTGAAGAATATAAGAATTTCAAAA</left_flank>
        <right_flank>TTTCGATTTTTAAGAATTTTAGAATTCCAGAATCTCGGAATTTCGGAATT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCTATTTTTCCGGATTTTTTTTCCCATCAAACATGAATTTAATGGTTGAAGACTATAATTGTCTCACTTTTCATGCTTTTTTCGAGCCAGTTTCAGTTCGATGTTTTCGTCAACTTTTACATGTTTTTTTCCGTGCAGTCTTCAAACGTTAAATTCATGTTTGATGGGGAAAAAAATCCGGAAAAATAGACGAAAAATTGGAAATTTCTGTTTCCGTTTTAGTTTTCCGTTTTCCGTTTTCCGCCCGATTCTTGAAGATTTTTTCCGTTTCCGTTTTCCGCGGAAGAAATTCCCCTTTCCGTTTCCGTATTTTGGGAAAATGCGTTTCCTCCCATCACTGATATATGGTACTGTATTGTTTTTTATTTAACTAAACAATTGTCAAACTTTCGGAATTTTCAGAAATTTGGAATTCACGAATTTCAGATTTTATAGAACTTTTGGATATTTAGAATATACGAACATTTTTTTTAATTGAAGAATATAAGAATTTCAAAATTTTCGATTTTTAAGAATTTTAGAATTCCAGAATCTCGGAATTTCGGAATTTGAGAATTTTCGGAACTTTAGGATTTTAAGATCTTCCAGAACTTCTGTAATTTTAGAATTGTATAGTTTTCGGAATTTCTGAGCATTAAAGTCATATATCTTACCATGCATAGCGCTATATATTCCACTATATATTTCGCTATATATGGTACTATATATGACATTTCAGAAGCTCACTGAGGAGCAAGCGTTGAGAGCACAAGAGAACTCGCCACACCAACACAAGCATCACGATTCGAGAGAAGAGAGATTGACGAAGAACGAGTTGACGGATAATGAGGATCAGAAGAAGAAGAAGGAGAGAGAGTACTGAAAAACAGATTTACCGTAAAACCTGTAATAGAAGGGCCCTCTAACTGTTGACTTTGAGCCAGATTATCTTGGTTCTTGTCAGAGATATCAAGAAGTTGTCAACTGATAAATTGTCTATCACAATGGCACAAACATTTT</canonical>
            <polymorphic>GTCTATTTTTCCGGATTTTTTTTCCCATCAAACATGAATTTAATGGTTGAAGACTATAATTGTCTCACTTTTCATGCTTTTTTCGAGCCAGTTTCAGTTCGATGTTTTCGTCAACTTTTACATGTTTTTTTCCGTGCAGTCTTCAAACGTTAAATTCATGTTTGATGGGGAAAAAAATCCGGAAAAATAGACGAAAAATTGGAAATTTCTGTTTCCGTTTTAGTTTTCCGTTTTCCGTTTTCCGCCCGATTCTTGAAGATTTTTTCCGTTTCCGTTTTCCGCGGAAGAAATTCCCCTTTCCGTTTCCGTATTTTGGGAAAATGCGTTTCCTCCCATCACTGATATATGGTACTGTATTGTTTTTTATTTAACTAAACAATTGTCAAACTTTCGGAATTTTCAGAAATTTGGAATTCACGAATTTCAGATTTTATAGAACTTTTGGATATTTAGAATATACGAACATTTTTTTTAATTGAAGAATATAAGAATTTCAAAAWTTTCGATTTTTAAGAATTTTAGAATTCCAGAATCTCGGAATTTCGGAATTTGAGAATTTTCGGAACTTTAGGATTTTAAGATCTTCCAGAACTTCTGTAATTTTAGAATTGTATAGTTTTCGGAATTTCTGAGCATTAAAGTCATATATCTTACCATGCATAGCGCTATATATTCCACTATATATTTCGCTATATATGGTACTATATATGACATTTCAGAAGCTCACTGAGGAGCAAGCGTTGAGAGCACAAGAGAACTCGCCACACCAACACAAGCATCACGATTCGAGAGAAGAGAGATTGACGAAGAACGAGTTGACGGATAATGAGGATCAGAAGAAGAAGAAGGAGAGAGAGTACTGAAAAACAGATTTACCGTAAAACCTGTAATAGAAGGGCCCTCTAACTGTTGACTTTGAGCCAGATTATCTTGGTTCTTGTCAGAGATATCAAGAAGTTGTCAACTGATAAATTGTCTATCACAATGGCACAAACATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>377 116 106 85 70 69 51 36 17 16 10 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>377 116 106 85 70 69 51 36 25 16 10 8 8 8 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>347 95 89 85 54 44 44 36 30 21 17 17 17 16 16 10 8 8 8 8 8 8 7 7</canonical_bands>
                <polymorphic_bands>347 95 89 85 54 44 44 36 30 25 21 17 17 16 16 10 8 8 8 8 8 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTCACGAATTTCAGATTTTA</pcr_primer_p1>
		<pcr_primer_p2>TGCATGGTAAGATATATGACTTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATTCACGAATTTCAGATTTTATAGAACTTTTGGATATTTAGAATATACGAACATTTTTTTTAATTGAAGAATATAAGAATTTCAAAATTTTCGATTTTTAAGAATTTTAGAATTCCAGAATCTCGGAATTTCGGAATTTGAGAATTTTCGGAACTTTAGGATTTTAAGATCTTCCAGAACTTCTGTAATTTTAGAATTGTATAGTTTTCGGAATTTCTGAGCATTAAAGTCATATATCTTACCATGCA</canonical_amplicon>
		<polymorphic_amplicon>GAATTCACGAATTTCAGATTTTATAGAACTTTTGGATATTTAGAATATACGAACATTTTTTTTAATTGAAGAATATAAGAATTTCAAAAWTTTCGATTTTTAAGAATTTTAGAATTCCAGAATCTCGGAATTTCGGAATTTGAGAATTTTCGGAACTTTAGGATTTTAAGATCTTCCAGAACTTCTGTAATTTTAGAATTGTATAGTTTTCGGAATTTCTGAGCATTAAAGTCATATATCTTACCATGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30560</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>258884</contig_pos>
        <strand></strand>
        <context>attccagaat[C/T]tcggaatttc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATAAGAATTTCAAAATTTTCGATTTTTAAGAATTTTAGAATTCCAGAAT</left_flank>
        <right_flank>TCGGAATTTCGGAATTTGAGAATTTTCGGAACTTTAGGATTTTAAGATCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAATTTAATGGTTGAAGACTATAATTGTCTCACTTTTCATGCTTTTTTCGAGCCAGTTTCAGTTCGATGTTTTCGTCAACTTTTACATGTTTTTTTCCGTGCAGTCTTCAAACGTTAAATTCATGTTTGATGGGGAAAAAAATCCGGAAAAATAGACGAAAAATTGGAAATTTCTGTTTCCGTTTTAGTTTTCCGTTTTCCGTTTTCCGCCCGATTCTTGAAGATTTTTTCCGTTTCCGTTTTCCGCGGAAGAAATTCCCCTTTCCGTTTCCGTATTTTGGGAAAATGCGTTTCCTCCCATCACTGATATATGGTACTGTATTGTTTTTTATTTAACTAAACAATTGTCAAACTTTCGGAATTTTCAGAAATTTGGAATTCACGAATTTCAGATTTTATAGAACTTTTGGATATTTAGAATATACGAACATTTTTTTTAATTGAAGAATATAAGAATTTCAAAATTTTCGATTTTTAAGAATTTTAGAATTCCAGAATCTCGGAATTTCGGAATTTGAGAATTTTCGGAACTTTAGGATTTTAAGATCTTCCAGAACTTCTGTAATTTTAGAATTGTATAGTTTTCGGAATTTCTGAGCATTAAAGTCATATATCTTACCATGCATAGCGCTATATATTCCACTATATATTTCGCTATATATGGTACTATATATGACATTTCAGAAGCTCACTGAGGAGCAAGCGTTGAGAGCACAAGAGAACTCGCCACACCAACACAAGCATCACGATTCGAGAGAAGAGAGATTGACGAAGAACGAGTTGACGGATAATGAGGATCAGAAGAAGAAGAAGGAGAGAGAGTACTGAAAAACAGATTTACCGTAAAACCTGTAATAGAAGGGCCCTCTAACTGTTGACTTTGAGCCAGATTATCTTGGTTCTTGTCAGAGATATCAAGAAGTTGTCAACTGATAAATTGTCTATCACAATGGCACAAACATTTTATCGGTTGACATATTTTGATATCTCGCATAGGAG</canonical>
            <polymorphic>TGAATTTAATGGTTGAAGACTATAATTGTCTCACTTTTCATGCTTTTTTCGAGCCAGTTTCAGTTCGATGTTTTCGTCAACTTTTACATGTTTTTTTCCGTGCAGTCTTCAAACGTTAAATTCATGTTTGATGGGGAAAAAAATCCGGAAAAATAGACGAAAAATTGGAAATTTCTGTTTCCGTTTTAGTTTTCCGTTTTCCGTTTTCCGCCCGATTCTTGAAGATTTTTTCCGTTTCCGTTTTCCGCGGAAGAAATTCCCCTTTCCGTTTCCGTATTTTGGGAAAATGCGTTTCCTCCCATCACTGATATATGGTACTGTATTGTTTTTTATTTAACTAAACAATTGTCAAACTTTCGGAATTTTCAGAAATTTGGAATTCACGAATTTCAGATTTTATAGAACTTTTGGATATTTAGAATATACGAACATTTTTTTTAATTGAAGAATATAAGAATTTCAAAATTTTCGATTTTTAAGAATTTTAGAATTCCAGAATYTCGGAATTTCGGAATTTGAGAATTTTCGGAACTTTAGGATTTTAAGATCTTCCAGAACTTCTGTAATTTTAGAATTGTATAGTTTTCGGAATTTCTGAGCATTAAAGTCATATATCTTACCATGCATAGCGCTATATATTCCACTATATATTTCGCTATATATGGTACTATATATGACATTTCAGAAGCTCACTGAGGAGCAAGCGTTGAGAGCACAAGAGAACTCGCCACACCAACACAAGCATCACGATTCGAGAGAAGAGAGATTGACGAAGAACGAGTTGACGGATAATGAGGATCAGAAGAAGAAGAAGGAGAGAGAGTACTGAAAAACAGATTTACCGTAAAACCTGTAATAGAAGGGCCCTCTAACTGTTGACTTTGAGCCAGATTATCTTGGTTCTTGTCAGAGATATCAAGAAGTTGTCAACTGATAAATTGTCTATCACAATGGCACAAACATTTTATCGGTTGACATATTTTGATATCTCGCATAGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>282 253 251 214</canonical_bands>
                <polymorphic_bands>535 251 214</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>282 253 251 214</canonical_bands>
                <polymorphic_bands>535 251 214</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTCACGAATTTCAGATTTTA</pcr_primer_p1>
		<pcr_primer_p2>TGCATGGTAAGATATATGACTTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATTCACGAATTTCAGATTTTATAGAACTTTTGGATATTTAGAATATACGAACATTTTTTTTAATTGAAGAATATAAGAATTTCAAAATTTTCGATTTTTAAGAATTTTAGAATTCCAGAATCTCGGAATTTCGGAATTTGAGAATTTTCGGAACTTTAGGATTTTAAGATCTTCCAGAACTTCTGTAATTTTAGAATTGTATAGTTTTCGGAATTTCTGAGCATTAAAGTCATATATCTTACCATGCA</canonical_amplicon>
		<polymorphic_amplicon>GAATTCACGAATTTCAGATTTTATAGAACTTTTGGATATTTAGAATATACGAACATTTTTTTTAATTGAAGAATATAAGAATTTCAAAATTTTCGATTTTTAAGAATTTTAGAATTCCAGAATYTCGGAATTTCGGAATTTGAGAATTTTCGGAACTTTAGGATTTTAAGATCTTCCAGAACTTCTGTAATTTTAGAATTGTATAGTTTTCGGAATTTCTGAGCATTAAAGTCATATATCTTACCATGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30561</snp_id>
        <super_contig>c005400683.Contig3</super_contig>
        <contig_pos>264993</contig_pos>
        <strand>+</strand>
        <context>CGTGTCAGAA[A/G]CAGCAGCTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGTTGGATTTGATGTCGGAAATTTGCTTCTGGAACACGACGTGTCAGAA</left_flank>
        <right_flank>CAGCAGCTCATCGACAAAATCGTTGATGTTGGATGCGTTCTGTCGGTTGG</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATATGGTATTGTTTATTGTACCGTGTGTGGTACGGTATATTCTATCATGTATGGTACCATTCATTTTACTATATATGGTGCTGTATGCTTTGCCATATATGGTACCGTATATTCCACCACTTATGTATGACACTATAAATGATCCGACCGGTACTGTATAAAACACTTTCTAGATTCTTCTGCACCACAGTTCGCGCTGATACATTCCCCGTTCAATTGGATTTGGCCCGAAACTATCGTCTACCGATTAGTGATAAGGAAAACAAGGATTTGGGATTCACAGATCCAATGGGTACTATAGATTCAACGTCTTCTGAATTACTAAATTGTGTGTATTTTTCAGAACTCTCCATGTGGCGTGCAGTTCGTCGTAGTAGCGCGGCTCCGACCTATTTCTCGGCTTCCGAAGGCAAATTCATCGACGGTGGAATGATTTCCAACAACCCCGTGTTGGATTTGATGTCGGAAATTTGCTTCTGGAACACGACGTGTCAGAAGCAGCAGCTCATCGACAAAATCGTTGATGTTGGATGCGTTCTGTCGGTTGGCACGGGAATCACACCGATTTGTCCGGTGGATCCGTCGGTTTTCGAGATGAATGATTGGTTGGGCATGCTACGTGGCATCAAGAACTTGTCGCTGGTGGTTATTGATCAGGTATAAAGAGATCAGGATCTAAAATCTTTACTATTAACAATCACCAAATTGTGGTGTGTGTCCGTTCGTTCGTTCCCGGTTAGCGGACCCTAGCGAAGTCCTCACTGGACCAAAACTTCTCGAATTTTCACAGATAATCTTAAATAGCAGCTAGATGATGCCCGAACTCTCGGTTTTCGAAAATTTTGATTATGAAGCCATCTGAAGATATCCTTGTCTTAAATAAATGAAAAAATTTAGGCGACAGCTACAGAGGGAGCTCCAATCACCAGAAGCCGAAGCTGGTGTCACTCGCTGGGAATTCCCTATTATCGATTGAACGCTCCAATCTTCAAGGACGT</canonical>
            <polymorphic>CTATATGGTATTGTTTATTGTACCGTGTGTGGTACGGTATATTCTATCATGTATGGTACCATTCATTTTACTATATATGGTGCTGTATGCTTTGCCATATATGGTACCGTATATTCCACCACTTATGTATGACACTATAAATGATCCGACCGGTACTGTATAAAACACTTTCTAGATTCTTCTGCACCACAGTTCGCGCTGATACATTCCCCGTTCAATTGGATTTGGCCCGAAACTATCGTCTACCGATTAGTGATAAGGAAAACAAGGATTTGGGATTCACAGATCCAATGGGTACTATAGATTCAACGTCTTCTGAATTACTAAATTGTGTGTATTTTTCAGAACTCTCCATGTGGCGTGCAGTTCGTCGTAGTAGCGCGGCTCCGACCTATTTCTCGGCTTCCGAAGGCAAATTCATCGACGGTGGAATGATTTCCAACAACCCCGTGTTGGATTTGATGTCGGAAATTTGCTTCTGGAACACGACGTGTCAGAARCAGCAGCTCATCGACAAAATCGTTGATGTTGGATGCGTTCTGTCGGTTGGCACGGGAATCACACCGATTTGTCCGGTGGATCCGTCGGTTTTCGAGATGAATGATTGGTTGGGCATGCTACGTGGCATCAAGAACTTGTCGCTGGTGGTTATTGATCAGGTATAAAGAGATCAGGATCTAAAATCTTTACTATTAACAATCACCAAATTGTGGTGTGTGTCCGTTCGTTCGTTCCCGGTTAGCGGACCCTAGCGAAGTCCTCACTGGACCAAAACTTCTCGAATTTTCACAGATAATCTTAAATAGCAGCTAGATGATGCCCGAACTCTCGGTTTTCGAAAATTTTGATTATGAAGCCATCTGAAGATATCCTTGTCTTAAATAAATGAAAAAATTTAGGCGACAGCTACAGAGGGAGCTCCAATCACCAGAAGCCGAAGCTGGTGTCACTCGCTGGGAATTCCCTATTATCGATTGAACGCTCCAATCTTCAAGGACGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>384 306 191 119</canonical_bands>
                <polymorphic_bands>384 303 191 122</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>500 303 194 3</canonical_bands>
                <polymorphic_bands>503 303 194</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGGAATGATTTCCAACAAC</pcr_primer_p1>
		<pcr_primer_p2>GATCCTGATCTCTTTATACCTGAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GTGGAATGATTTCCAACAACCCCGTGTTGGATTTGATGTCGGAAATTTGCTTCTGGAACACGACGTGTCAGAAGCAGCAGCTCATCGACAAAATCGTTGATGTTGGATGCGTTCTGTCGGTTGGCACGGGAATCACACCGATTTGTCCGGTGGATCCGTCGGTTTTCGAGATGAATGATTGGTTGGGCATGCTACGTGGCATCAAGAACTTGTCGCTGGTGGTTATTGATCAGGTATAAAGAGATCAGGATC</canonical_amplicon>
		<polymorphic_amplicon>GTGGAATGATTTCCAACAACCCCGTGTTGGATTTGATGTCGGAAATTTGCTTCTGGAACACGACGTGTCAGAARCAGCAGCTCATCGACAAAATCGTTGATGTTGGATGCGTTCTGTCGGTTGGCACGGGAATCACACCGATTTGTCCGGTGGATCCGTCGGTTTTCGAGATGAATGATTGGTTGGGCATGCTACGTGGCATCAAGAACTTGTCGCTGGTGGTTATTGATCAGGTATAAAGAGATCAGGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30562</snp_id>
        <super_contig>c005400755.Contig7</super_contig>
        <contig_pos>43222</contig_pos>
        <strand></strand>
        <context>gaaaagtttt[T/G]aggyttcata</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GCAGTGAAACGAGAGAGGTCTCGTTTCTCTGCGTCTCTCAGAAAAGTTTT</left_flank>
        <right_flank>AGGCTTCATATCTTCCTTAAAACACACTCAATTTTTACGATTTTTGTGTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTTATTTTTTGGCTGTTTCATTTTCGAGGCCTCACTGATTTTTTTTTGAATTAATGGTTTGCTTATGCTCTCCTTAAATTCTATTTCCCAGGTAACCAATGGAGCCGAAGACAAATTCCGCTACGAGTCAGCCACAAACATGCTTCTAGCCACTGGAAACCTGGTAGCTGGCGAGAGATACCAAGTTGTCATCGAAGCTACCGATGGAGGAGGCAGAAGCTCCCAGGCCATCGTTATTGTACTCGCAATGGACCCAACACAACTGACATTCAGTTCGCTGGCACCACTTCCTGGCATGGAGACGTTTATGCCGAATCCAATAGCAATGGCGACTACACCAGGGACGATGGTCACTAGTGCAGGTAATTAGCTTCAACATAAGCTTAAAATTATTGAAAACGGTTTATGATAAGTCGAGTTATGAGTCCTTGTAGTTTTGAAGAGACGCAGTGAAACGAGAGAGGTCTCGTTTCTCTGCGTCTCTCAGAAAAGTTTTTAGGCTTCATATCTTCCTTAAAACACACTCAATTTTTACGATTTTTGTGTAATCATATTTTCTTGTTTCTTAGCTTCAAAATGAACTAAAAATCAATGAAAATGGACTAATATAAGGGGAGTTATGAGCCTTTTAAGTTTAGAAGAGACGCAGAGAAACGAGAAAGCTCGCTTCAAAATGATCAATTTCAAACGATTTTTGGACTATTTTGCAGCAAATTATAGGTTTTTTTTTTAAATTCTAATAAGAGCTTGGAATCGAATTTTGATGATTTTCACCACATTCGATCTCAAATTTTGCCTAGATTTCGTCTTTAGGCTTTGAAAATCATTGTCCACTGTTCACCGAAAAAGTAAACTATGTGAAAAAGTTTATCACCAATTTTTGGAAAATTCTGAATCAAAACTTTTTTACTCATGATTTTTAAAAAATCAAACGAAAATATTTAATGATTTACTACAAAATAGTTGAAAAAAGGCCAAAAACGAACAATTTAGAAGG</canonical>
            <polymorphic>TTGTTTATTTTTTGGCTGTTTCATTTTCGAGGCCTCACTGATTTTTTTTTGAATTAATGGTTTGCTTATGCTCTCCTTAAATTCTATTTCCCAGGTAACCAATGGAGCCGAAGACAAATTCCGCTACGAGTCAGCCACAAACATGCTTCTAGCCACTGGAAACCTGGTAGCTGGCGAGAGATACCAAGTTGTCATCGAAGCTACCGATGGAGGAGGCAGAAGCTCCCAGGCCATCGTTATTGTACTCGCAATGGACCCAACACAACTGACATTCAGTTCGCTGGCACCACTTCCTGGCATGGAGACGTTTATGCCGAATCCAATAGCAATGGCGACTACACCAGGGACGATGGTCACTAGTGCAGGTAATTAGCTTCAACATAAGCTTAAAATTATTGAAAACGGTTTATGATAAGTCGAGTTATGAGTCCTTGTAGTTTTGAAGAGACGCAGTGAAACGAGAGAGGTCTCGTTTCTCTGCGTCTCTCAGAAAAGTTTTKAGGCTTCATATCTTCCTTAAAACACACTCAATTTTTACGATTTTTGTGTAATCATATTTTCTTGTTTCTTAGCTTCAAAATGAACTAAAAATCAATGAAAATGGACTAATATAAGGGGAGTTATGAGCCTTTTAAGTTTAGAAGAGACGCAGAGAAACGAGAAAGCTCGCTTCAAAATGATCAATTTCAAACGATTTTTGGACTATTTTGCAGCAAATTATAGGTTTTTTTTTTAAATTCTAATAAGAGCTTGGAATCGAATTTTGATGATTTTCACCACATTCGATCTCAAATTTTGCCTAGATTTCGTCTTTAGGCTTTGAAAATCATTGTCCACTGTTCACCGAAAAAGTAAACTATGTGAAAAAGTTTATCACCAATTTTTGGAAAATTCTGAATCAAAACTTTTTTACTCATGATTTTTAAAAAATCAAACGAAAATATTTAATGATTTACTACAAAATAGTTGAAAAAAGGCCAAAAACGAACAATTTAGAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGGTCACTAGTGCAGGTAAT</pcr_primer_p1>
		<pcr_primer_p2>CCAAAAATCGTTTGAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>353</pcr_amplicon_size>
		<canonical_amplicon>GATGGTCACTAGTGCAGGTAATTAGCTTCAACATAAGCTTAAAATTATTGAAAACGGTTTATGATAAGTCGAGTTATGAGTCCTTGTAGTTTTGAAGAGACGCAGTGAAACGAGAGAGGTCTCGTTTCTCTGCGTCTCTCAGAAAAGTTTTTAGGCTTCATATCTTCCTTAAAACACACTCAATTTTTACGATTTTTGTGTAATCATATTTTCTTGTTTCTTAGCTTCAAAATGAACTAAAAATCAATGAAAATGGACTAATATAAGGGGAGTTATGAGCCTTTTAAGTTTAGAAGAGACGCAGAGAAACGAGAAAGCTCGCTTCAAAATGATCAATTTCAAACGATTTTTGG</canonical_amplicon>
		<polymorphic_amplicon>GATGGTCACTAGTGCAGGTAATTAGCTTCAACATAAGCTTAAAATTATTGAAAACGGTTTATGATAAGTCGAGTTATGAGTCCTTGTAGTTTTGAAGAGACGCAGTGAAACGAGAGAGGTCTCGTTTCTCTGCGTCTCTCAGAAAAGTTTTKAGGCTTCATATCTTCCTTAAAACACACTCAATTTTTACGATTTTTGTGTAATCATATTTTCTTGTTTCTTAGCTTCAAAATGAACTAAAAATCAATGAAAATGGACTAATATAAGGGGAGTTATGAGCCTTTTAAGTTTAGAAGAGACGCAGAGAAACGAGAAAGCTCGCTTCAAAATGATCAATTTCAAACGATTTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30563</snp_id>
        <super_contig>c005400755.Contig7</super_contig>
        <contig_pos>43226</contig_pos>
        <strand></strand>
        <context>agttttkagg[C/T]ttcatatctt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAACGAGAGAGGTCTCGTTTCTCTGCGTCTCTCAGAAAAGTTTTTAGG</left_flank>
        <right_flank>TTCATATCTTCCTTAAAACACACTCAATTTTTACGATTTTTGTGTAATCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATTTTTTGGCTGTTTCATTTTCGAGGCCTCACTGATTTTTTTTTGAATTAATGGTTTGCTTATGCTCTCCTTAAATTCTATTTCCCAGGTAACCAATGGAGCCGAAGACAAATTCCGCTACGAGTCAGCCACAAACATGCTTCTAGCCACTGGAAACCTGGTAGCTGGCGAGAGATACCAAGTTGTCATCGAAGCTACCGATGGAGGAGGCAGAAGCTCCCAGGCCATCGTTATTGTACTCGCAATGGACCCAACACAACTGACATTCAGTTCGCTGGCACCACTTCCTGGCATGGAGACGTTTATGCCGAATCCAATAGCAATGGCGACTACACCAGGGACGATGGTCACTAGTGCAGGTAATTAGCTTCAACATAAGCTTAAAATTATTGAAAACGGTTTATGATAAGTCGAGTTATGAGTCCTTGTAGTTTTGAAGAGACGCAGTGAAACGAGAGAGGTCTCGTTTCTCTGCGTCTCTCAGAAAAGTTTTTAGGCTTCATATCTTCCTTAAAACACACTCAATTTTTACGATTTTTGTGTAATCATATTTTCTTGTTTCTTAGCTTCAAAATGAACTAAAAATCAATGAAAATGGACTAATATAAGGGGAGTTATGAGCCTTTTAAGTTTAGAAGAGACGCAGAGAAACGAGAAAGCTCGCTTCAAAATGATCAATTTCAAACGATTTTTGGACTATTTTGCAGCAAATTATAGGTTTTTTTTTTAAATTCTAATAAGAGCTTGGAATCGAATTTTGATGATTTTCACCACATTCGATCTCAAATTTTGCCTAGATTTCGTCTTTAGGCTTTGAAAATCATTGTCCACTGTTCACCGAAAAAGTAAACTATGTGAAAAAGTTTATCACCAATTTTTGGAAAATTCTGAATCAAAACTTTTTTACTCATGATTTTTAAAAAATCAAACGAAAATATTTAATGATTTACTACAAAATAGTTGAAAAAAGGCCAAAAACGAACAATTTAGAAGGGAGT</canonical>
            <polymorphic>TTATTTTTTGGCTGTTTCATTTTCGAGGCCTCACTGATTTTTTTTTGAATTAATGGTTTGCTTATGCTCTCCTTAAATTCTATTTCCCAGGTAACCAATGGAGCCGAAGACAAATTCCGCTACGAGTCAGCCACAAACATGCTTCTAGCCACTGGAAACCTGGTAGCTGGCGAGAGATACCAAGTTGTCATCGAAGCTACCGATGGAGGAGGCAGAAGCTCCCAGGCCATCGTTATTGTACTCGCAATGGACCCAACACAACTGACATTCAGTTCGCTGGCACCACTTCCTGGCATGGAGACGTTTATGCCGAATCCAATAGCAATGGCGACTACACCAGGGACGATGGTCACTAGTGCAGGTAATTAGCTTCAACATAAGCTTAAAATTATTGAAAACGGTTTATGATAAGTCGAGTTATGAGTCCTTGTAGTTTTGAAGAGACGCAGTGAAACGAGAGAGGTCTCGTTTCTCTGCGTCTCTCAGAAAAGTTTTTAGGYTTCATATCTTCCTTAAAACACACTCAATTTTTACGATTTTTGTGTAATCATATTTTCTTGTTTCTTAGCTTCAAAATGAACTAAAAATCAATGAAAATGGACTAATATAAGGGGAGTTATGAGCCTTTTAAGTTTAGAAGAGACGCAGAGAAACGAGAAAGCTCGCTTCAAAATGATCAATTTCAAACGATTTTTGGACTATTTTGCAGCAAATTATAGGTTTTTTTTTTAAATTCTAATAAGAGCTTGGAATCGAATTTTGATGATTTTCACCACATTCGATCTCAAATTTTGCCTAGATTTCGTCTTTAGGCTTTGAAAATCATTGTCCACTGTTCACCGAAAAAGTAAACTATGTGAAAAAGTTTATCACCAATTTTTGGAAAATTCTGAATCAAAACTTTTTTACTCATGATTTTTAAAAAATCAAACGAAAATATTTAATGATTTACTACAAAATAGTTGAAAAAAGGCCAAAAACGAACAATTTAGAAGGGAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>160 143 118 84 75 69 68 55 38 30 27 27 22 18 18 17 12 11 8</canonical_bands>
                <polymorphic_bands>187 160 143 84 75 68 55 38 30 27 27 22 18 18 17 12 11 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATGGTCACTAGTGCAGGTAAT</pcr_primer_p1>
		<pcr_primer_p2>CCAAAAATCGTTTGAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>353</pcr_amplicon_size>
		<canonical_amplicon>GATGGTCACTAGTGCAGGTAATTAGCTTCAACATAAGCTTAAAATTATTGAAAACGGTTTATGATAAGTCGAGTTATGAGTCCTTGTAGTTTTGAAGAGACGCAGTGAAACGAGAGAGGTCTCGTTTCTCTGCGTCTCTCAGAAAAGTTTTTAGGCTTCATATCTTCCTTAAAACACACTCAATTTTTACGATTTTTGTGTAATCATATTTTCTTGTTTCTTAGCTTCAAAATGAACTAAAAATCAATGAAAATGGACTAATATAAGGGGAGTTATGAGCCTTTTAAGTTTAGAAGAGACGCAGAGAAACGAGAAAGCTCGCTTCAAAATGATCAATTTCAAACGATTTTTGG</canonical_amplicon>
		<polymorphic_amplicon>GATGGTCACTAGTGCAGGTAATTAGCTTCAACATAAGCTTAAAATTATTGAAAACGGTTTATGATAAGTCGAGTTATGAGTCCTTGTAGTTTTGAAGAGACGCAGTGAAACGAGAGAGGTCTCGTTTCTCTGCGTCTCTCAGAAAAGTTTTTAGGYTTCATATCTTCCTTAAAACACACTCAATTTTTACGATTTTTGTGTAATCATATTTTCTTGTTTCTTAGCTTCAAAATGAACTAAAAATCAATGAAAATGGACTAATATAAGGGGAGTTATGAGCCTTTTAAGTTTAGAAGAGACGCAGAGAAACGAGAAAGCTCGCTTCAAAATGATCAATTTCAAACGATTTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30564</snp_id>
        <super_contig>c005400755.Contig7</super_contig>
        <contig_pos>43245</contig_pos>
        <strand></strand>
        <context>ttccttaaaa[C/T]acactcaatt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCTCTGCGTCTCTCAGAAAAGTTTTTAGGCTTCATATCTTCCTTAAAA</left_flank>
        <right_flank>ACACTCAATTTTTACGATTTTTGTGTAATCATATTTTCTTGTTTCTTAGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCGAGGCCTCACTGATTTTTTTTTGAATTAATGGTTTGCTTATGCTCTCCTTAAATTCTATTTCCCAGGTAACCAATGGAGCCGAAGACAAATTCCGCTACGAGTCAGCCACAAACATGCTTCTAGCCACTGGAAACCTGGTAGCTGGCGAGAGATACCAAGTTGTCATCGAAGCTACCGATGGAGGAGGCAGAAGCTCCCAGGCCATCGTTATTGTACTCGCAATGGACCCAACACAACTGACATTCAGTTCGCTGGCACCACTTCCTGGCATGGAGACGTTTATGCCGAATCCAATAGCAATGGCGACTACACCAGGGACGATGGTCACTAGTGCAGGTAATTAGCTTCAACATAAGCTTAAAATTATTGAAAACGGTTTATGATAAGTCGAGTTATGAGTCCTTGTAGTTTTGAAGAGACGCAGTGAAACGAGAGAGGTCTCGTTTCTCTGCGTCTCTCAGAAAAGTTTTTAGGCTTCATATCTTCCTTAAAACACACTCAATTTTTACGATTTTTGTGTAATCATATTTTCTTGTTTCTTAGCTTCAAAATGAACTAAAAATCAATGAAAATGGACTAATATAAGGGGAGTTATGAGCCTTTTAAGTTTAGAAGAGACGCAGAGAAACGAGAAAGCTCGCTTCAAAATGATCAATTTCAAACGATTTTTGGACTATTTTGCAGCAAATTATAGGTTTTTTTTTTAAATTCTAATAAGAGCTTGGAATCGAATTTTGATGATTTTCACCACATTCGATCTCAAATTTTGCCTAGATTTCGTCTTTAGGCTTTGAAAATCATTGTCCACTGTTCACCGAAAAAGTAAACTATGTGAAAAAGTTTATCACCAATTTTTGGAAAATTCTGAATCAAAACTTTTTTACTCATGATTTTTAAAAAATCAAACGAAAATATTTAATGATTTACTACAAAATAGTTGAAAAAAGGCCAAAAACGAACAATTTAGAAGGGAGTTATGAGCACTTGAAGTTTA</canonical>
            <polymorphic>TTTTCGAGGCCTCACTGATTTTTTTTTGAATTAATGGTTTGCTTATGCTCTCCTTAAATTCTATTTCCCAGGTAACCAATGGAGCCGAAGACAAATTCCGCTACGAGTCAGCCACAAACATGCTTCTAGCCACTGGAAACCTGGTAGCTGGCGAGAGATACCAAGTTGTCATCGAAGCTACCGATGGAGGAGGCAGAAGCTCCCAGGCCATCGTTATTGTACTCGCAATGGACCCAACACAACTGACATTCAGTTCGCTGGCACCACTTCCTGGCATGGAGACGTTTATGCCGAATCCAATAGCAATGGCGACTACACCAGGGACGATGGTCACTAGTGCAGGTAATTAGCTTCAACATAAGCTTAAAATTATTGAAAACGGTTTATGATAAGTCGAGTTATGAGTCCTTGTAGTTTTGAAGAGACGCAGTGAAACGAGAGAGGTCTCGTTTCTCTGCGTCTCTCAGAAAAGTTTTTAGGCTTCATATCTTCCTTAAAAYACACTCAATTTTTACGATTTTTGTGTAATCATATTTTCTTGTTTCTTAGCTTCAAAATGAACTAAAAATCAATGAAAATGGACTAATATAAGGGGAGTTATGAGCCTTTTAAGTTTAGAAGAGACGCAGAGAAACGAGAAAGCTCGCTTCAAAATGATCAATTTCAAACGATTTTTGGACTATTTTGCAGCAAATTATAGGTTTTTTTTTTAAATTCTAATAAGAGCTTGGAATCGAATTTTGATGATTTTCACCACATTCGATCTCAAATTTTGCCTAGATTTCGTCTTTAGGCTTTGAAAATCATTGTCCACTGTTCACCGAAAAAGTAAACTATGTGAAAAAGTTTATCACCAATTTTTGGAAAATTCTGAATCAAAACTTTTTTACTCATGATTTTTAAAAAATCAAACGAAAATATTTAATGATTTACTACAAAATAGTTGAAAAAAGGCCAAAAACGAACAATTTAGAAGGGAGTTATGAGCACTTGAAGTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>228 136 107 100 93 69 57 51 24 22 20 18 16 14 13 11 7 6 3 3 2</canonical_bands>
                <polymorphic_bands>228 136 107 100 93 71 57 51 24 22 20 18 16 14 13 11 7 6 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATGGTCACTAGTGCAGGTAAT</pcr_primer_p1>
		<pcr_primer_p2>CCAAAAATCGTTTGAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>353</pcr_amplicon_size>
		<canonical_amplicon>GATGGTCACTAGTGCAGGTAATTAGCTTCAACATAAGCTTAAAATTATTGAAAACGGTTTATGATAAGTCGAGTTATGAGTCCTTGTAGTTTTGAAGAGACGCAGTGAAACGAGAGAGGTCTCGTTTCTCTGCGTCTCTCAGAAAAGTTTTTAGGCTTCATATCTTCCTTAAAACACACTCAATTTTTACGATTTTTGTGTAATCATATTTTCTTGTTTCTTAGCTTCAAAATGAACTAAAAATCAATGAAAATGGACTAATATAAGGGGAGTTATGAGCCTTTTAAGTTTAGAAGAGACGCAGAGAAACGAGAAAGCTCGCTTCAAAATGATCAATTTCAAACGATTTTTGG</canonical_amplicon>
		<polymorphic_amplicon>GATGGTCACTAGTGCAGGTAATTAGCTTCAACATAAGCTTAAAATTATTGAAAACGGTTTATGATAAGTCGAGTTATGAGTCCTTGTAGTTTTGAAGAGACGCAGTGAAACGAGAGAGGTCTCGTTTCTCTGCGTCTCTCAGAAAAGTTTTTAGGCTTCATATCTTCCTTAAAAYACACTCAATTTTTACGATTTTTGTGTAATCATATTTTCTTGTTTCTTAGCTTCAAAATGAACTAAAAATCAATGAAAATGGACTAATATAAGGGGAGTTATGAGCCTTTTAAGTTTAGAAGAGACGCAGAGAAACGAGAAAGCTCGCTTCAAAATGATCAATTTCAAACGATTTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30565</snp_id>
        <super_contig>c005400755.Contig7</super_contig>
        <contig_pos>43290</contig_pos>
        <strand>+</strand>
        <context>TTTCTTGTTT[C/T]TTAGcttcaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAACACACTCAATTTTTACGATTTTTGTGTAATCATATTTTCTTGTTT</left_flank>
        <right_flank>TTAGCTTCAAAATGAACTAAAAATCAATGAAAATGGACTAATATAAGGGG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCTCTCCTTAAATTCTATTTCCCAGGTAACCAATGGAGCCGAAGACAAATTCCGCTACGAGTCAGCCACAAACATGCTTCTAGCCACTGGAAACCTGGTAGCTGGCGAGAGATACCAAGTTGTCATCGAAGCTACCGATGGAGGAGGCAGAAGCTCCCAGGCCATCGTTATTGTACTCGCAATGGACCCAACACAACTGACATTCAGTTCGCTGGCACCACTTCCTGGCATGGAGACGTTTATGCCGAATCCAATAGCAATGGCGACTACACCAGGGACGATGGTCACTAGTGCAGGTAATTAGCTTCAACATAAGCTTAAAATTATTGAAAACGGTTTATGATAAGTCGAGTTATGAGTCCTTGTAGTTTTGAAGAGACGCAGTGAAACGAGAGAGGTCTCGTTTCTCTGCGTCTCTCAGAAAAGTTTTTAGGCTTCATATCTTCCTTAAAACACACTCAATTTTTACGATTTTTGTGTAATCATATTTTCTTGTTTCTTAGCTTCAAAATGAACTAAAAATCAATGAAAATGGACTAATATAAGGGGAGTTATGAGCCTTTTAAGTTTAGAAGAGACGCAGAGAAACGAGAAAGCTCGCTTCAAAATGATCAATTTCAAACGATTTTTGGACTATTTTGCAGCAAATTATAGGTTTTTTTTTTAAATTCTAATAAGAGCTTGGAATCGAATTTTGATGATTTTCACCACATTCGATCTCAAATTTTGCCTAGATTTCGTCTTTAGGCTTTGAAAATCATTGTCCACTGTTCACCGAAAAAGTAAACTATGTGAAAAAGTTTATCACCAATTTTTGGAAAATTCTGAATCAAAACTTTTTTACTCATGATTTTTAAAAAATCAAACGAAAATATTTAATGATTTACTACAAAATAGTTGAAAAAAGGCCAAAAACGAACAATTTAGAAGGGAGTTATGAGCACTTGAAGTTTAGAAGAGACGCAGAGAAACGAGAGCGCTCTCTTTTCTCTGCGTCTC</canonical>
            <polymorphic>TGCTCTCCTTAAATTCTATTTCCCAGGTAACCAATGGAGCCGAAGACAAATTCCGCTACGAGTCAGCCACAAACATGCTTCTAGCCACTGGAAACCTGGTAGCTGGCGAGAGATACCAAGTTGTCATCGAAGCTACCGATGGAGGAGGCAGAAGCTCCCAGGCCATCGTTATTGTACTCGCAATGGACCCAACACAACTGACATTCAGTTCGCTGGCACCACTTCCTGGCATGGAGACGTTTATGCCGAATCCAATAGCAATGGCGACTACACCAGGGACGATGGTCACTAGTGCAGGTAATTAGCTTCAACATAAGCTTAAAATTATTGAAAACGGTTTATGATAAGTCGAGTTATGAGTCCTTGTAGTTTTGAAGAGACGCAGTGAAACGAGAGAGGTCTCGTTTCTCTGCGTCTCTCAGAAAAGTTTTTAGGCTTCATATCTTCCTTAAAACACACTCAATTTTTACGATTTTTGTGTAATCATATTTTCTTGTTTYTTAGCTTCAAAATGAACTAAAAATCAATGAAAATGGACTAATATAAGGGGAGTTATGAGCCTTTTAAGTTTAGAAGAGACGCAGAGAAACGAGAAAGCTCGCTTCAAAATGATCAATTTCAAACGATTTTTGGACTATTTTGCAGCAAATTATAGGTTTTTTTTTTAAATTCTAATAAGAGCTTGGAATCGAATTTTGATGATTTTCACCACATTCGATCTCAAATTTTGCCTAGATTTCGTCTTTAGGCTTTGAAAATCATTGTCCACTGTTCACCGAAAAAGTAAACTATGTGAAAAAGTTTATCACCAATTTTTGGAAAATTCTGAATCAAAACTTTTTTACTCATGATTTTTAAAAAATCAAACGAAAATATTTAATGATTTACTACAAAATAGTTGAAAAAAGGCCAAAAACGAACAATTTAGAAGGGAGTTATGAGCACTTGAAGTTTAGAAGAGACGCAGAGAAACGAGAGCGCTCTCTTTTCTCTGCGTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 418 82</canonical_bands>
                <polymorphic_bands>582 418</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATGGTCACTAGTGCAGGTAAT</pcr_primer_p1>
		<pcr_primer_p2>CCAAAAATCGTTTGAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>353</pcr_amplicon_size>
		<canonical_amplicon>GATGGTCACTAGTGCAGGTAATTAGCTTCAACATAAGCTTAAAATTATTGAAAACGGTTTATGATAAGTCGAGTTATGAGTCCTTGTAGTTTTGAAGAGACGCAGTGAAACGAGAGAGGTCTCGTTTCTCTGCGTCTCTCAGAAAAGTTTTTAGGCTTCATATCTTCCTTAAAACACACTCAATTTTTACGATTTTTGTGTAATCATATTTTCTTGTTTCTTAGCTTCAAAATGAACTAAAAATCAATGAAAATGGACTAATATAAGGGGAGTTATGAGCCTTTTAAGTTTAGAAGAGACGCAGAGAAACGAGAAAGCTCGCTTCAAAATGATCAATTTCAAACGATTTTTGG</canonical_amplicon>
		<polymorphic_amplicon>GATGGTCACTAGTGCAGGTAATTAGCTTCAACATAAGCTTAAAATTATTGAAAACGGTTTATGATAAGTCGAGTTATGAGTCCTTGTAGTTTTGAAGAGACGCAGTGAAACGAGAGAGGTCTCGTTTCTCTGCGTCTCTCAGAAAAGTTTTTAGGCTTCATATCTTCCTTAAAACACACTCAATTTTTACGATTTTTGTGTAATCATATTTTCTTGTTTYTTAGCTTCAAAATGAACTAAAAATCAATGAAAATGGACTAATATAAGGGGAGTTATGAGCCTTTTAAGTTTAGAAGAGACGCAGAGAAACGAGAAAGCTCGCTTCAAAATGATCAATTTCAAACGATTTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30566</snp_id>
        <super_contig>c005400755.Contig7</super_contig>
        <contig_pos>43353</contig_pos>
        <strand></strand>
        <context>ttatgagcct[T/A]ttaagtttag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGAACTAAAAATCAATGAAAATGGACTAATATAAGGGGAGTTATGAGCCT</left_flank>
        <right_flank>TTAAGTTTAGAAGAGACGCAGAGAAACGAGAAAGCTCGCTTCAAAATGAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCCACAAACATGCTTCTAGCCACTGGAAACCTGGTAGCTGGCGAGAGATACCAAGTTGTCATCGAAGCTACCGATGGAGGAGGCAGAAGCTCCCAGGCCATCGTTATTGTACTCGCAATGGACCCAACACAACTGACATTCAGTTCGCTGGCACCACTTCCTGGCATGGAGACGTTTATGCCGAATCCAATAGCAATGGCGACTACACCAGGGACGATGGTCACTAGTGCAGGTAATTAGCTTCAACATAAGCTTAAAATTATTGAAAACGGTTTATGATAAGTCGAGTTATGAGTCCTTGTAGTTTTGAAGAGACGCAGTGAAACGAGAGAGGTCTCGTTTCTCTGCGTCTCTCAGAAAAGTTTTTAGGCTTCATATCTTCCTTAAAACACACTCAATTTTTACGATTTTTGTGTAATCATATTTTCTTGTTTCTTAGCTTCAAAATGAACTAAAAATCAATGAAAATGGACTAATATAAGGGGAGTTATGAGCCTTTTAAGTTTAGAAGAGACGCAGAGAAACGAGAAAGCTCGCTTCAAAATGATCAATTTCAAACGATTTTTGGACTATTTTGCAGCAAATTATAGGTTTTTTTTTTAAATTCTAATAAGAGCTTGGAATCGAATTTTGATGATTTTCACCACATTCGATCTCAAATTTTGCCTAGATTTCGTCTTTAGGCTTTGAAAATCATTGTCCACTGTTCACCGAAAAAGTAAACTATGTGAAAAAGTTTATCACCAATTTTTGGAAAATTCTGAATCAAAACTTTTTTACTCATGATTTTTAAAAAATCAAACGAAAATATTTAATGATTTACTACAAAATAGTTGAAAAAAGGCCAAAAACGAACAATTTAGAAGGGAGTTATGAGCACTTGAAGTTTAGAAGAGACGCAGAGAAACGAGAGCGCTCTCTTTTCTCTGCGTCTCTCTAACATAACTTCCTTCAAACATGTCCATTTTCAATGACTTTTTCGCTATTTGAACTGAAAT</canonical>
            <polymorphic>CAGCCACAAACATGCTTCTAGCCACTGGAAACCTGGTAGCTGGCGAGAGATACCAAGTTGTCATCGAAGCTACCGATGGAGGAGGCAGAAGCTCCCAGGCCATCGTTATTGTACTCGCAATGGACCCAACACAACTGACATTCAGTTCGCTGGCACCACTTCCTGGCATGGAGACGTTTATGCCGAATCCAATAGCAATGGCGACTACACCAGGGACGATGGTCACTAGTGCAGGTAATTAGCTTCAACATAAGCTTAAAATTATTGAAAACGGTTTATGATAAGTCGAGTTATGAGTCCTTGTAGTTTTGAAGAGACGCAGTGAAACGAGAGAGGTCTCGTTTCTCTGCGTCTCTCAGAAAAGTTTTTAGGCTTCATATCTTCCTTAAAACACACTCAATTTTTACGATTTTTGTGTAATCATATTTTCTTGTTTCTTAGCTTCAAAATGAACTAAAAATCAATGAAAATGGACTAATATAAGGGGAGTTATGAGCCTWTTAAGTTTAGAAGAGACGCAGAGAAACGAGAAAGCTCGCTTCAAAATGATCAATTTCAAACGATTTTTGGACTATTTTGCAGCAAATTATAGGTTTTTTTTTTAAATTCTAATAAGAGCTTGGAATCGAATTTTGATGATTTTCACCACATTCGATCTCAAATTTTGCCTAGATTTCGTCTTTAGGCTTTGAAAATCATTGTCCACTGTTCACCGAAAAAGTAAACTATGTGAAAAAGTTTATCACCAATTTTTGGAAAATTCTGAATCAAAACTTTTTTACTCATGATTTTTAAAAAATCAAACGAAAATATTTAATGATTTACTACAAAATAGTTGAAAAAAGGCCAAAAACGAACAATTTAGAAGGGAGTTATGAGCACTTGAAGTTTAGAAGAGACGCAGAGAAACGAGAGCGCTCTCTTTTCTCTGCGTCTCTCTAACATAACTTCCTTCAAACATGTCCATTTTCAATGACTTTTTCGCTATTTGAACTGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGGTCACTAGTGCAGGTAAT</pcr_primer_p1>
		<pcr_primer_p2>CCAAAAATCGTTTGAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>353</pcr_amplicon_size>
		<canonical_amplicon>GATGGTCACTAGTGCAGGTAATTAGCTTCAACATAAGCTTAAAATTATTGAAAACGGTTTATGATAAGTCGAGTTATGAGTCCTTGTAGTTTTGAAGAGACGCAGTGAAACGAGAGAGGTCTCGTTTCTCTGCGTCTCTCAGAAAAGTTTTTAGGCTTCATATCTTCCTTAAAACACACTCAATTTTTACGATTTTTGTGTAATCATATTTTCTTGTTTCTTAGCTTCAAAATGAACTAAAAATCAATGAAAATGGACTAATATAAGGGGAGTTATGAGCCTTTTAAGTTTAGAAGAGACGCAGAGAAACGAGAAAGCTCGCTTCAAAATGATCAATTTCAAACGATTTTTGG</canonical_amplicon>
		<polymorphic_amplicon>GATGGTCACTAGTGCAGGTAATTAGCTTCAACATAAGCTTAAAATTATTGAAAACGGTTTATGATAAGTCGAGTTATGAGTCCTTGTAGTTTTGAAGAGACGCAGTGAAACGAGAGAGGTCTCGTTTCTCTGCGTCTCTCAGAAAAGTTTTTAGGCTTCATATCTTCCTTAAAACACACTCAATTTTTACGATTTTTGTGTAATCATATTTTCTTGTTTCTTAGCTTCAAAATGAACTAAAAATCAATGAAAATGGACTAATATAAGGGGAGTTATGAGCCTWTTAAGTTTAGAAGAGACGCAGAGAAACGAGAAAGCTCGCTTCAAAATGATCAATTTCAAACGATTTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30567</snp_id>
        <super_contig>c005400755.Contig7</super_contig>
        <contig_pos>43519</contig_pos>
        <strand>+</strand>
        <context>TCTCAAATTT[C/T]GCCTAGATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGCTTGGAATCGAATTTTGATGATTTTCACCACATTCGATCTCAAATTT</left_flank>
        <right_flank>GCCTAGATTTCGTCTTTAGGCTTTGAAAATCATTGTCCACTGTTCACCGA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGGAGACGTTTATGCCGAATCCAATAGCAATGGCGACTACACCAGGGACGATGGTCACTAGTGCAGGTAATTAGCTTCAACATAAGCTTAAAATTATTGAAAACGGTTTATGATAAGTCGAGTTATGAGTCCTTGTAGTTTTGAAGAGACGCAGTGAAACGAGAGAGGTCTCGTTTCTCTGCGTCTCTCAGAAAAGTTTTTAGGCTTCATATCTTCCTTAAAACACACTCAATTTTTACGATTTTTGTGTAATCATATTTTCTTGTTTCTTAGCTTCAAAATGAACTAAAAATCAATGAAAATGGACTAATATAAGGGGAGTTATGAGCCTTTTAAGTTTAGAAGAGACGCAGAGAAACGAGAAAGCTCGCTTCAAAATGATCAATTTCAAACGATTTTTGGACTATTTTGCAGCAAATTATAGGTTTTTTTTTTAAATTCTAATAAGAGCTTGGAATCGAATTTTGATGATTTTCACCACATTCGATCTCAAATTTTGCCTAGATTTCGTCTTTAGGCTTTGAAAATCATTGTCCACTGTTCACCGAAAAAGTAAACTATGTGAAAAAGTTTATCACCAATTTTTGGAAAATTCTGAATCAAAACTTTTTTACTCATGATTTTTAAAAAATCAAACGAAAATATTTAATGATTTACTACAAAATAGTTGAAAAAAGGCCAAAAACGAACAATTTAGAAGGGAGTTATGAGCACTTGAAGTTTAGAAGAGACGCAGAGAAACGAGAGCGCTCTCTTTTCTCTGCGTCTCTCTAACATAACTTCCTTCAAACATGTCCATTTTCAATGACTTTTTCGCTATTTGAACTGAAATTTTTTATATTTTCAGAATCCGAAGAAACCATTCAAACATTTGTTACCGAAGTCAACGAGAACACGCCGGCAAACACTGTTGTGGTTTCATTGGGTGACGAATCGTCAAAAGATTTGACCTACTTTAATATTGTCGGAGGAAATGAGGAGGGCAAATTTGCTATTGA</canonical>
            <polymorphic>CATGGAGACGTTTATGCCGAATCCAATAGCAATGGCGACTACACCAGGGACGATGGTCACTAGTGCAGGTAATTAGCTTCAACATAAGCTTAAAATTATTGAAAACGGTTTATGATAAGTCGAGTTATGAGTCCTTGTAGTTTTGAAGAGACGCAGTGAAACGAGAGAGGTCTCGTTTCTCTGCGTCTCTCAGAAAAGTTTTTAGGCTTCATATCTTCCTTAAAACACACTCAATTTTTACGATTTTTGTGTAATCATATTTTCTTGTTTCTTAGCTTCAAAATGAACTAAAAATCAATGAAAATGGACTAATATAAGGGGAGTTATGAGCCTTTTAAGTTTAGAAGAGACGCAGAGAAACGAGAAAGCTCGCTTCAAAATGATCAATTTCAAACGATTTTTGGACTATTTTGCAGCAAATTATAGGTTTTTTTTTTAAATTCTAATAAGAGCTTGGAATCGAATTTTGATGATTTTCACCACATTCGATCTCAAATTTYGCCTAGATTTCGTCTTTAGGCTTTGAAAATCATTGTCCACTGTTCACCGAAAAAGTAAACTATGTGAAAAAGTTTATCACCAATTTTTGGAAAATTCTGAATCAAAACTTTTTTACTCATGATTTTTAAAAAATCAAACGAAAATATTTAATGATTTACTACAAAATAGTTGAAAAAAGGCCAAAAACGAACAATTTAGAAGGGAGTTATGAGCACTTGAAGTTTAGAAGAGACGCAGAGAAACGAGAGCGCTCTCTTTTCTCTGCGTCTCTCTAACATAACTTCCTTCAAACATGTCCATTTTCAATGACTTTTTCGCTATTTGAACTGAAATTTTTTATATTTTCAGAATCCGAAGAAACCATTCAAACATTTGTTACCGAAGTCAACGAGAACACGCCGGCAAACACTGTTGTGGTTTCATTGGGTGACGAATCGTCAAAAGATTTGACCTACTTTAATATTGTCGGAGGAAATGAGGAGGGCAAATTTGCTATTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATCAATTTCAAACGATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCCAAAAATTGGTGATAAAC</pcr_primer_p2>
		<pcr_amplicon_size>214</pcr_amplicon_size>
		<canonical_amplicon>ATGATCAATTTCAAACGATTTTTGGACTATTTTGCAGCAAATTATAGGTTTTTTTTTTAAATTCTAATAAGAGCTTGGAATCGAATTTTGATGATTTTCACCACATTCGATCTCAAATTTTGCCTAGATTTCGTCTTTAGGCTTTGAAAATCATTGTCCACTGTTCACCGAAAAAGTAAACTATGTGAAAAAGTTTATCACCAATTTTTGGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATGATCAATTTCAAACGATTTTTGGACTATTTTGCAGCAAATTATAGGTTTTTTTTTTAAATTCTAATAAGAGCTTGGAATCGAATTTTGATGATTTTCACCACATTCGATCTCAAATTTYGCCTAGATTTCGTCTTTAGGCTTTGAAAATCATTGTCCACTGTTCACCGAAAAAGTAAACTATGTGAAAAAGTTTATCACCAATTTTTGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30568</snp_id>
        <super_contig>c005400932.Contig1</super_contig>
        <contig_pos>45374</contig_pos>
        <strand>+</strand>
        <context>GTTATCTTCT[C/T]AGAATAGCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAGTTGTTTTGGGCCTTTCCGAAAAAAAACCTAAACAAGGTTATCTTCT</left_flank>
        <right_flank>AGAATAGCATTATTTTTTGCTCCTGACCTTCCGAGCTTTGGAATTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATATTTGGTTTTCAACATGCGCTTCGGTTTTTCCTGATATGAAAGAGGATTTAGGAGCGGGTGCTTCGGAGCGCCACCCAAAATGGAAAATAATGTATTTCTGCTTCAGAGACATTTGATAAAAAAATTTAGTTCCCTTTTAGAAGCTTATTGAAAACTTATCCTAACGTTTAGATCCCTTTCCGAGTTGTTTCTTGTTCCAGTTTCAAAAAATACAAATCGAAGAAAAACAATAATACCATTGGAAATATTTTTAAGCCCAAAAAATTTACTTAGTAAGCAAATTTTGTTTTCAAAGTTTTTTTCCCTAATCACCCAGTAGCTGGAAATTCAGAAACTTTGTTAATTTTTTTCAGAACAAAGTAAAACCATTCTGCTAAAATCCTTGAACACTGAAACTTCTTTTGGGTACTCTTTTTCTTTTTGAACTGCTTTTTTAGGGTCAAAATAGTTGTTTTGGGCCTTTCCGAAAAAAAACCTAAACAAGGTTATCTTCTCAGAATAGCATTATTTTTTGCTCCTGACCTTCCGAGCTTTGGAATTTTTTTCCGAAAACCTTTTACGTTTTAAAAAAATCTATACACTTTCTTTTTTTCCCAAAACATTCCAATTTCATCGTCCCATCATCTTCCCATCTATCTGATGTGCCAGATTTTGAGACCTCAAAAGGTGACTTGACTATTTTTCATATGCCATCCTCTCCTCCCCAAATAGGGCATCCTGCTCATAAATATGTAGATTTTCTTCTTTTCCGGTGGAAGGAGACCGGAGAAAAAGCAGATGGAATTCAGTAGAGCACGATGAACTGTGATTCTTTCCGTGGCGTCCCCCAACAGTGTCTCAAACATATGTTTTGCGTGTTCCGGAAAACGAGACAACGACACCATGTGTTTCAAGACTCATCAGAAGAAAATACTCTTTTCAAAATGCGCTGATTTATGTCGAATTAGTTTTGTTTTGTTTTGTTTCTAAGCCGGTGCAATGTCAGTCTCTGTTTT</canonical>
            <polymorphic>CAATATTTGGTTTTCAACATGCGCTTCGGTTTTTCCTGATATGAAAGAGGATTTAGGAGCGGGTGCTTCGGAGCGCCACCCAAAATGGAAAATAATGTATTTCTGCTTCAGAGACATTTGATAAAAAAATTTAGTTCCCTTTTAGAAGCTTATTGAAAACTTATCCTAACGTTTAGATCCCTTTCCGAGTTGTTTCTTGTTCCAGTTTCAAAAAATACAAATCGAAGAAAAACAATAATACCATTGGAAATATTTTTAAGCCCAAAAAATTTACTTAGTAAGCAAATTTTGTTTTCAAAGTTTTTTTCCCTAATCACCCAGTAGCTGGAAATTCAGAAACTTTGTTAATTTTTTTCAGAACAAAGTAAAACCATTCTGCTAAAATCCTTGAACACTGAAACTTCTTTTGGGTACTCTTTTTCTTTTTGAACTGCTTTTTTAGGGTCAAAATAGTTGTTTTGGGCCTTTCCGAAAAAAAACCTAAACAAGGTTATCTTCTYAGAATAGCATTATTTTTTGCTCCTGACCTTCCGAGCTTTGGAATTTTTTTCCGAAAACCTTTTACGTTTTAAAAAAATCTATACACTTTCTTTTTTTCCCAAAACATTCCAATTTCATCGTCCCATCATCTTCCCATCTATCTGATGTGCCAGATTTTGAGACCTCAAAAGGTGACTTGACTATTTTTCATATGCCATCCTCTCCTCCCCAAATAGGGCATCCTGCTCATAAATATGTAGATTTTCTTCTTTTCCGGTGGAAGGAGACCGGAGAAAAAGCAGATGGAATTCAGTAGAGCACGATGAACTGTGATTCTTTCCGTGGCGTCCCCCAACAGTGTCTCAAACATATGTTTTGCGTGTTCCGGAAAACGAGACAACGACACCATGTGTTTCAAGACTCATCAGAAGAAAATACTCTTTTCAAAATGCGCTGATTTATGTCGAATTAGTTTTGTTTTGTTTTGTTTCTAAGCCGGTGCAATGTCAGTCTCTGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>264 149 113 93 91 76 70 40 31 31 22 20</canonical_bands>
                <polymorphic_bands>264 149 113 93 91 76 70 62 40 22 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTCTTTTGGGTACTCTTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CACATCAGATAGATGGGAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTCTTTTGGGTACTCTTTTTCTTTTTGAACTGCTTTTTTAGGGTCAAAATAGTTGTTTTGGGCCTTTCCGAAAAAAAACCTAAACAAGGTTATCTTCTCAGAATAGCATTATTTTTTGCTCCTGACCTTCCGAGCTTTGGAATTTTTTTCCGAAAACCTTTTACGTTTTAAAAAAATCTATACACTTTCTTTTTTTCCCAAAACATTCCAATTTCATCGTCCCATCATCTTCCCATCTATCTGATGTG</canonical_amplicon>
		<polymorphic_amplicon>ACTTCTTTTGGGTACTCTTTTTCTTTTTGAACTGCTTTTTTAGGGTCAAAATAGTTGTTTTGGGCCTTTCCGAAAAAAAACCTAAACAAGGTTATCTTCTYAGAATAGCATTATTTTTTGCTCCTGACCTTCCGAGCTTTGGAATTTTTTTCCGAAAACCTTTTACGTTTTAAAAAAATCTATACACTTTCTTTTTTTCCCAAAACATTCCAATTTCATCGTCCCATCATCTTCCCATCTATCTGATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30569</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>50192</contig_pos>
        <strand>+</strand>
        <context>AAGAAATTGA[A/G]RAACTTGGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATCTTTGATGTTAAAGGGAGAGAAGAGGAAATTACTGAAAGAAATTGA</left_flank>
        <right_flank>AAACTTGGAGTCGAGGCTATTCTAAAGAACATATGACTAAAATAAAGTTT</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCGGAACGGAAGGGGGTGGAGACCTAAAAAAGGCTCTATTTATTCTGGCTGCCACGTGACTGACTAATGGTGGGAACTCAATCACAGAAAAATTACAAAAATCTGATTGAATTCCTGGGAAAGGGAATGGAATTATTGACGAAAACATAATGGAAAATGACACATTTCAGAAAAAAGAACGAACGGCTGGTTTTTTTTTAGAGACACAAAGGAAGAAGCTGAAAAGTATATTGTTCTTATGAAATTATTATGACGTCTGGAATCCTAGACTAAAGATTCGAGACTAATATGGAATCGAAAAAAGAAGAGTAAAGTCTAGTTTGAAACATCAAAAATAATAAAAGAAGAAAAATGACATTGAATAATATTTTGCAGGTGTCAATTTTTAAGTTTTTCTCCAGATAATTAAGTGGAAATGACTTTTAAAGGTTGCTTAATAGTTTCCTTTGATCTTTGATGTTAAAGGGAGAGAAGAGGAAATTACTGAAAGAAATTGAAAAACTTGGAGTCGAGGCTATTCTAAAGAACATATGACTAAAATAAAGTTTGGCTTTCATGTGGGCTTTTATAACCAGAACTTGGTACTTGAGACAGAAAAAAATAATATCGTCAAGTGGAACAATATTTCAAAATAGTATAGTTCTTCCGTTGATTTATAAGGTTTTGCATATGGAAAGTATTCAAAACTACCGTATTATTTGGGGTATTCAAATCTGGAGGTTTCACATCTCGATAAAAGAAACTGAAAGTATACGCCGTTTTATCTCTAACCAGCAAGCTGGTGCGCCTTCGGCGCTAATCAATCTAGTTTTTTTTACTGATTCGTGGCTCAGCTCCTCAATTATTTTTAAAGGGTCACGTAAATTTGTATTAATTTTTCAAGCTTTTCAAAAGTTTACAGACACCGGGACGGACAGACGCCTCTAGCGTTTTATTTATAAGGAAGATAGAAGCTAGCCCAAACTTGGAGACTATTGAACTATGTTTAATCAAAACCT</canonical>
            <polymorphic>AATCGGAACGGAAGGGGGTGGAGACCTAAAAAAGGCTCTATTTATTCTGGCTGCCACGTGACTGACTAATGGTGGGAACTCAATCACAGAAAAATTACAAAAATCTGATTGAATTCCTGGGAAAGGGAATGGAATTATTGACGAAAACATAATGGAAAATGACACATTTCAGAAAAAAGAACGAACGGCTGGTTTTTTTTTAGAGACACAAAGGAAGAAGCTGAAAAGTATATTGTTCTTATGAAATTATTATGACGTCTGGAATCCTAGACTAAAGATTCGAGACTAATATGGAATCGAAAAAAGAAGAGTAAAGTCTAGTTTGAAACATCAAAAATAATAAAAGAAGAAAAATGACATTGAATAATATTTTGCAGGTGTCAATTTTTAAGTTTTTCTCCAGATAATTAAGTGGAAATGACTTTTAAAGGTTGCTTAATAGTTTCCTTTGATCTTTGATGTTAAAGGGAGAGAAGAGGAAATTACTGAAAGAAATTGARAAACTTGGAGTCGAGGCTATTCTAAAGAACATATGACTAAAATAAAGTTTGGCTTTCATGTGGGCTTTTATAACCAGAACTTGGTACTTGAGACAGAAAAAAATAATATCGTCAAGTGGAACAATATTTCAAAATAGTATAGTTCTTCCGTTGATTTATAAGGTTTTGCATATGGAAAGTATTCAAAACTACCGTATTATTTGGGGTATTCAAATCTGGAGGTTTCACATCTCGATAAAAGAAACTGAAAGTATACGCCGTTTTATCTCTAACCAGCAAGCTGGTGCGCCTTCGGCGCTAATCAATCTAGTTTTTTTTACTGATTCGTGGCTCAGCTCCTCAATTATTTTTAAAGGGTCACGTAAATTTGTATTAATTTTTCAAGCTTTTCAAAAGTTTACAGACACCGGGACGGACAGACGCCTCTAGCGTTTTATTTATAAGGAAGATAGAAGCTAGCCCAAACTTGGAGACTATTGAACTATGTTTAATCAAAACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGTGTCAATTTTTAAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTTCCACTTGACGATATTATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGGTGTCAATTTTTAAGTTTTTCTCCAGATAATTAAGTGGAAATGACTTTTAAAGGTTGCTTAATAGTTTCCTTTGATCTTTGATGTTAAAGGGAGAGAAGAGGAAATTACTGAAAGAAATTGAAAAACTTGGAGTCGAGGCTATTCTAAAGAACATATGACTAAAATAAAGTTTGGCTTTCATGTGGGCTTTTATAACCAGAACTTGGTACTTGAGACAGAAAAAAATAATATCGTCAAGTGGAACAA</canonical_amplicon>
		<polymorphic_amplicon>CAGGTGTCAATTTTTAAGTTTTTCTCCAGATAATTAAGTGGAAATGACTTTTAAAGGTTGCTTAATAGTTTCCTTTGATCTTTGATGTTAAAGGGAGAGAAGAGGAAATTACTGAAAGAAATTGARAAACTTGGAGTCGAGGCTATTCTAAAGAACATATGACTAAAATAAAGTTTGGCTTTCATGTGGGCTTTTATAACCAGAACTTGGTACTTGAGACAGAAAAAAATAATATCGTCAAGTGGAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30570</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>50193</contig_pos>
        <strand>+</strand>
        <context>AGAAATTGAR[A/G]AACTTGGAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATCTTTGATGTTAAAGGGAGAGAAGAGGAAATTACTGAAAGAAATTGAA</left_flank>
        <right_flank>AACTTGGAGTCGAGGCTATTCTAAAGAACATATGACTAAAATAAAGTTTG</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGGAACGGAAGGGGGTGGAGACCTAAAAAAGGCTCTATTTATTCTGGCTGCCACGTGACTGACTAATGGTGGGAACTCAATCACAGAAAAATTACAAAAATCTGATTGAATTCCTGGGAAAGGGAATGGAATTATTGACGAAAACATAATGGAAAATGACACATTTCAGAAAAAAGAACGAACGGCTGGTTTTTTTTTAGAGACACAAAGGAAGAAGCTGAAAAGTATATTGTTCTTATGAAATTATTATGACGTCTGGAATCCTAGACTAAAGATTCGAGACTAATATGGAATCGAAAAAAGAAGAGTAAAGTCTAGTTTGAAACATCAAAAATAATAAAAGAAGAAAAATGACATTGAATAATATTTTGCAGGTGTCAATTTTTAAGTTTTTCTCCAGATAATTAAGTGGAAATGACTTTTAAAGGTTGCTTAATAGTTTCCTTTGATCTTTGATGTTAAAGGGAGAGAAGAGGAAATTACTGAAAGAAATTGAAAAACTTGGAGTCGAGGCTATTCTAAAGAACATATGACTAAAATAAAGTTTGGCTTTCATGTGGGCTTTTATAACCAGAACTTGGTACTTGAGACAGAAAAAAATAATATCGTCAAGTGGAACAATATTTCAAAATAGTATAGTTCTTCCGTTGATTTATAAGGTTTTGCATATGGAAAGTATTCAAAACTACCGTATTATTTGGGGTATTCAAATCTGGAGGTTTCACATCTCGATAAAAGAAACTGAAAGTATACGCCGTTTTATCTCTAACCAGCAAGCTGGTGCGCCTTCGGCGCTAATCAATCTAGTTTTTTTTACTGATTCGTGGCTCAGCTCCTCAATTATTTTTAAAGGGTCACGTAAATTTGTATTAATTTTTCAAGCTTTTCAAAAGTTTACAGACACCGGGACGGACAGACGCCTCTAGCGTTTTATTTATAAGGAAGATAGAAGCTAGCCCAAACTTGGAGACTATTGAACTATGTTTAATCAAAACCTA</canonical>
            <polymorphic>ATCGGAACGGAAGGGGGTGGAGACCTAAAAAAGGCTCTATTTATTCTGGCTGCCACGTGACTGACTAATGGTGGGAACTCAATCACAGAAAAATTACAAAAATCTGATTGAATTCCTGGGAAAGGGAATGGAATTATTGACGAAAACATAATGGAAAATGACACATTTCAGAAAAAAGAACGAACGGCTGGTTTTTTTTTAGAGACACAAAGGAAGAAGCTGAAAAGTATATTGTTCTTATGAAATTATTATGACGTCTGGAATCCTAGACTAAAGATTCGAGACTAATATGGAATCGAAAAAAGAAGAGTAAAGTCTAGTTTGAAACATCAAAAATAATAAAAGAAGAAAAATGACATTGAATAATATTTTGCAGGTGTCAATTTTTAAGTTTTTCTCCAGATAATTAAGTGGAAATGACTTTTAAAGGTTGCTTAATAGTTTCCTTTGATCTTTGATGTTAAAGGGAGAGAAGAGGAAATTACTGAAAGAAATTGAARAACTTGGAGTCGAGGCTATTCTAAAGAACATATGACTAAAATAAAGTTTGGCTTTCATGTGGGCTTTTATAACCAGAACTTGGTACTTGAGACAGAAAAAAATAATATCGTCAAGTGGAACAATATTTCAAAATAGTATAGTTCTTCCGTTGATTTATAAGGTTTTGCATATGGAAAGTATTCAAAACTACCGTATTATTTGGGGTATTCAAATCTGGAGGTTTCACATCTCGATAAAAGAAACTGAAAGTATACGCCGTTTTATCTCTAACCAGCAAGCTGGTGCGCCTTCGGCGCTAATCAATCTAGTTTTTTTTACTGATTCGTGGCTCAGCTCCTCAATTATTTTTAAAGGGTCACGTAAATTTGTATTAATTTTTCAAGCTTTTCAAAAGTTTACAGACACCGGGACGGACAGACGCCTCTAGCGTTTTATTTATAAGGAAGATAGAAGCTAGCCCAAACTTGGAGACTATTGAACTATGTTTAATCAAAACCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGTGTCAATTTTTAAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTTCCACTTGACGATATTATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGGTGTCAATTTTTAAGTTTTTCTCCAGATAATTAAGTGGAAATGACTTTTAAAGGTTGCTTAATAGTTTCCTTTGATCTTTGATGTTAAAGGGAGAGAAGAGGAAATTACTGAAAGAAATTGAAAAACTTGGAGTCGAGGCTATTCTAAAGAACATATGACTAAAATAAAGTTTGGCTTTCATGTGGGCTTTTATAACCAGAACTTGGTACTTGAGACAGAAAAAAATAATATCGTCAAGTGGAACAA</canonical_amplicon>
		<polymorphic_amplicon>CAGGTGTCAATTTTTAAGTTTTTCTCCAGATAATTAAGTGGAAATGACTTTTAAAGGTTGCTTAATAGTTTCCTTTGATCTTTGATGTTAAAGGGAGAGAAGAGGAAATTACTGAAAGAAATTGAARAACTTGGAGTCGAGGCTATTCTAAAGAACATATGACTAAAATAAAGTTTGGCTTTCATGTGGGCTTTTATAACCAGAACTTGGTACTTGAGACAGAAAAAAATAATATCGTCAAGTGGAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30571</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>50420</contig_pos>
        <strand>+</strand>
        <context>GGAGGTTTCA[C/G]ATCTCGATAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGTATTCAAAACTACCGTATTATTTGGGGTATTCAAATCTGGAGGTTTCA</left_flank>
        <right_flank>ATCTCGATAAAAGAAACTGAAAGTATACGCCGTTTTATCTCTAACCAGCA</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATATTGTTCTTATGAAATTATTATGACGTCTGGAATCCTAGACTAAAGATTCGAGACTAATATGGAATCGAAAAAAGAAGAGTAAAGTCTAGTTTGAAACATCAAAAATAATAAAAGAAGAAAAATGACATTGAATAATATTTTGCAGGTGTCAATTTTTAAGTTTTTCTCCAGATAATTAAGTGGAAATGACTTTTAAAGGTTGCTTAATAGTTTCCTTTGATCTTTGATGTTAAAGGGAGAGAAGAGGAAATTACTGAAAGAAATTGAAAAACTTGGAGTCGAGGCTATTCTAAAGAACATATGACTAAAATAAAGTTTGGCTTTCATGTGGGCTTTTATAACCAGAACTTGGTACTTGAGACAGAAAAAAATAATATCGTCAAGTGGAACAATATTTCAAAATAGTATAGTTCTTCCGTTGATTTATAAGGTTTTGCATATGGAAAGTATTCAAAACTACCGTATTATTTGGGGTATTCAAATCTGGAGGTTTCACATCTCGATAAAAGAAACTGAAAGTATACGCCGTTTTATCTCTAACCAGCAAGCTGGTGCGCCTTCGGCGCTAATCAATCTAGTTTTTTTTACTGATTCGTGGCTCAGCTCCTCAATTATTTTTAAAGGGTCACGTAAATTTGTATTAATTTTTCAAGCTTTTCAAAAGTTTACAGACACCGGGACGGACAGACGCCTCTAGCGTTTTATTTATAAGGAAGATAGAAGCTAGCCCAAACTTGGAGACTATTGAACTATGTTTAATCAAAACCTAGAAACATTATTCTTAGGTTTTGAAATTCTAAAATACCCTCTTTTATACCATTTCCCACATTCTTTGATCAAAGTTTTGTCTAATCTTTCTAAATAGATCTTTCACAATTTCAAAGTTTTCAGCCTTTCCATTTCAAAATGTTAGACAACCTGGTACGACTTCAAAAGCTGTAACATTTCATAATTCTAGATGATTTGATTTTCTACATAATGATTATTGAAATAACA</canonical>
            <polymorphic>TATATTGTTCTTATGAAATTATTATGACGTCTGGAATCCTAGACTAAAGATTCGAGACTAATATGGAATCGAAAAAAGAAGAGTAAAGTCTAGTTTGAAACATCAAAAATAATAAAAGAAGAAAAATGACATTGAATAATATTTTGCAGGTGTCAATTTTTAAGTTTTTCTCCAGATAATTAAGTGGAAATGACTTTTAAAGGTTGCTTAATAGTTTCCTTTGATCTTTGATGTTAAAGGGAGAGAAGAGGAAATTACTGAAAGAAATTGAAAAACTTGGAGTCGAGGCTATTCTAAAGAACATATGACTAAAATAAAGTTTGGCTTTCATGTGGGCTTTTATAACCAGAACTTGGTACTTGAGACAGAAAAAAATAATATCGTCAAGTGGAACAATATTTCAAAATAGTATAGTTCTTCCGTTGATTTATAAGGTTTTGCATATGGAAAGTATTCAAAACTACCGTATTATTTGGGGTATTCAAATCTGGAGGTTTCASATCTCGATAAAAGAAACTGAAAGTATACGCCGTTTTATCTCTAACCAGCAAGCTGGTGCGCCTTCGGCGCTAATCAATCTAGTTTTTTTTACTGATTCGTGGCTCAGCTCCTCAATTATTTTTAAAGGGTCACGTAAATTTGTATTAATTTTTCAAGCTTTTCAAAAGTTTACAGACACCGGGACGGACAGACGCCTCTAGCGTTTTATTTATAAGGAAGATAGAAGCTAGCCCAAACTTGGAGACTATTGAACTATGTTTAATCAAAACCTAGAAACATTATTCTTAGGTTTTGAAATTCTAAAATACCCTCTTTTATACCATTTCCCACATTCTTTGATCAAAGTTTTGTCTAATCTTTCTAAATAGATCTTTCACAATTTCAAAGTTTTCAGCCTTTCCATTTCAAAATGTTAGACAACCTGGTACGACTTCAAAAGCTGTAACATTTCATAATTCTAGATGATTTGATTTTCTACATAATGATTATTGAAATAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>152 152 148 123 109 59 56 47 46 43 34 31</canonical_bands>
                <polymorphic_bands>168 152 152 148 123 56 47 46 43 34 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAAGTATTCAAAACTACCGTAT</pcr_primer_p1>
		<pcr_primer_p2>ACATAGTTCAATAGTCTCCAAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>314</pcr_amplicon_size>
		<canonical_amplicon>GGAAAGTATTCAAAACTACCGTATTATTTGGGGTATTCAAATCTGGAGGTTTCACATCTCGATAAAAGAAACTGAAAGTATACGCCGTTTTATCTCTAACCAGCAAGCTGGTGCGCCTTCGGCGCTAATCAATCTAGTTTTTTTTACTGATTCGTGGCTCAGCTCCTCAATTATTTTTAAAGGGTCACGTAAATTTGTATTAATTTTTCAAGCTTTTCAAAAGTTTACAGACACCGGGACGGACAGACGCCTCTAGCGTTTTATTTATAAGGAAGATAGAAGCTAGCCCAAACTTGGAGACTATTGAACTATGT</canonical_amplicon>
		<polymorphic_amplicon>GGAAAGTATTCAAAACTACCGTATTATTTGGGGTATTCAAATCTGGAGGTTTCASATCTCGATAAAAGAAACTGAAAGTATACGCCGTTTTATCTCTAACCAGCAAGCTGGTGCGCCTTCGGCGCTAATCAATCTAGTTTTTTTTACTGATTCGTGGCTCAGCTCCTCAATTATTTTTAAAGGGTCACGTAAATTTGTATTAATTTTTCAAGCTTTTCAAAAGTTTACAGACACCGGGACGGACAGACGCCTCTAGCGTTTTATTTATAAGGAAGATAGAAGCTAGCCCAAACTTGGAGACTATTGAACTATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30572</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>52207</contig_pos>
        <strand>+</strand>
        <context>CCGTTTTTTT[A/T]ATCAAAAGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAAATGGATATTTTGAAAACATCCCTGATGTGTTGGTTTCCGTTTTTTT</left_flank>
        <right_flank>ATCAAAAGACTACTACTTATATCAGACGAACTTCCTTTCCCCACAAAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATATCTCTTAAAGTAATTGAGATAATCGAGCTCAAACTTGACAGTGTGTGGGGCCCTTCTGTTACAGGTTTTACGGTAATGTAAAAAAAAAATCCATGATTTTCATTTTAAGATCAGCTGCATTTCTTTCTAGAATCCTCCAGATCAAGTCGGAAACATCATCGGGAAGTCAAGCAAGTGATGTTTTTCTAAATTTTCAACATCGGAAATTCAAATTCCACAGATTTCCAGAGACACCTACGAAGCAGAGAACGCCCACTTGACATTTCCTGTTGCTGAAATTTATTTTAAAAATATTTTCTATGATTTCATTTTTGTACTCATTTAACTTCATGATTTTTCTGTTTTCAAGTGCTTCACCATGAAAAAGTCTTCTTTAGAATTTGCAAATTTTCGAAGATTAGGGTTCTAGAAAATTCAATCTCTATACGAAATTAGTAAGATAAATAAAATGGATATTTTGAAAACATCCCTGATGTGTTGGTTTCCGTTTTTTTAATCAAAAGACTACTACTTATATCAGACGAACTTCCTTTCCCCACAAAACTACGTTTTTCATTTATGTACATCTTTTTGGAAAAAAAAGGATGGTTGCTGTTTTTTGAGAAAGAATCTTTGACATTTGATATAGAGCATGAATCAGAAAAAACAAAGAGAAAAAATACAAAAATGGCTTCTGACTTATGAGTTTTGGTGTAATCGGTTGTGTATTGAGAGGGTGATCGTAAAGAGAAATTAATTAGAAAAATAATGAGTGATCAGTGTTCGGGTACATGCATCAGTCATGGATCAGGAACTAGGTCATAAAAAATGGGAAGACCTGAAAATTATATTGTATGTTTTCAGATAATTCGAAAAACGTTCCAAAGACGGGTCATTTGGTAAATCAAAGGGAACTATCGTATTCCCTCTAACAGAAGCCCACAGAAACCGTCAATTTTGAGCTTAATTTCTCGATTCCTGTGAGAGATATCAAACATTTGTTAACTGATAATTTT</canonical>
            <polymorphic>TTATATCTCTTAAAGTAATTGAGATAATCGAGCTCAAACTTGACAGTGTGTGGGGCCCTTCTGTTACAGGTTTTACGGTAATGTAAAAAAAAAATCCATGATTTTCATTTTAAGATCAGCTGCATTTCTTTCTAGAATCCTCCAGATCAAGTCGGAAACATCATCGGGAAGTCAAGCAAGTGATGTTTTTCTAAATTTTCAACATCGGAAATTCAAATTCCACAGATTTCCAGAGACACCTACGAAGCAGAGAACGCCCACTTGACATTTCCTGTTGCTGAAATTTATTTTAAAAATATTTTCTATGATTTCATTTTTGTACTCATTTAACTTCATGATTTTTCTGTTTTCAAGTGCTTCACCATGAAAAAGTCTTCTTTAGAATTTGCAAATTTTCGAAGATTAGGGTTCTAGAAAATTCAATCTCTATACGAAATTAGTAAGATAAATAAAATGGATATTTTGAAAACATCCCTGATGTGTTGGTTTCCGTTTTTTTWATCAAAAGACTACTACTTATATCAGACGAACTTCCTTTCCCCACAAAACTACGTTTTTCATTTATGTACATCTTTTTGGAAAAAAAAGGATGGTTGCTGTTTTTTGAGAAAGAATCTTTGACATTTGATATAGAGCATGAATCAGAAAAAACAAAGAGAAAAAATACAAAAATGGCTTCTGACTTATGAGTTTTGGTGTAATCGGTTGTGTATTGAGAGGGTGATCGTAAAGAGAAATTAATTAGAAAAATAATGAGTGATCAGTGTTCGGGTACATGCATCAGTCATGGATCAGGAACTAGGTCATAAAAAATGGGAAGACCTGAAAATTATATTGTATGTTTTCAGATAATTCGAAAAACGTTCCAAAGACGGGTCATTTGGTAAATCAAAGGGAACTATCGTATTCCCTCTAACAGAAGCCCACAGAAACCGTCAATTTTGAGCTTAATTTCTCGATTCCTGTGAGAGATATCAAACATTTGTTAACTGATAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>240 210 180 171 100 38 37 14 10</canonical_bands>
                <polymorphic_bands>411 210 180 100 38 37 14 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAAGATTAGGGTTCTAGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGATTCATGCTCTATATCAAATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGAAGATTAGGGTTCTAGAAAATTCAATCTCTATACGAAATTAGTAAGATAAATAAAATGGATATTTTGAAAACATCCCTGATGTGTTGGTTTCCGTTTTTTTAATCAAAAGACTACTACTTATATCAGACGAACTTCCTTTCCCCACAAAACTACGTTTTTCATTTATGTACATCTTTTTGGAAAAAAAAGGATGGTTGCTGTTTTTTGAGAAAGAATCTTTGACATTTGATATAGAGCATGAATCA</canonical_amplicon>
		<polymorphic_amplicon>CGAAGATTAGGGTTCTAGAAAATTCAATCTCTATACGAAATTAGTAAGATAAATAAAATGGATATTTTGAAAACATCCCTGATGTGTTGGTTTCCGTTTTTTTWATCAAAAGACTACTACTTATATCAGACGAACTTCCTTTCCCCACAAAACTACGTTTTTCATTTATGTACATCTTTTTGGAAAAAAAAGGATGGTTGCTGTTTTTTGAGAAAGAATCTTTGACATTTGATATAGAGCATGAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30573</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>52353</contig_pos>
        <strand>+</strand>
        <context>CATGAATCAG[A/G]AAAAACAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTGTTTTTTGAGAAAGAATCTTTGACATTTGATATAGAGCATGAATCAG</left_flank>
        <right_flank>AAAAACAAAGAGAAAAAATACAAAAATGGCTTCTGACTTATGAGTTTTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAGTCGGAAACATCATCGGGAAGTCAAGCAAGTGATGTTTTTCTAAATTTTCAACATCGGAAATTCAAATTCCACAGATTTCCAGAGACACCTACGAAGCAGAGAACGCCCACTTGACATTTCCTGTTGCTGAAATTTATTTTAAAAATATTTTCTATGATTTCATTTTTGTACTCATTTAACTTCATGATTTTTCTGTTTTCAAGTGCTTCACCATGAAAAAGTCTTCTTTAGAATTTGCAAATTTTCGAAGATTAGGGTTCTAGAAAATTCAATCTCTATACGAAATTAGTAAGATAAATAAAATGGATATTTTGAAAACATCCCTGATGTGTTGGTTTCCGTTTTTTTAATCAAAAGACTACTACTTATATCAGACGAACTTCCTTTCCCCACAAAACTACGTTTTTCATTTATGTACATCTTTTTGGAAAAAAAAGGATGGTTGCTGTTTTTTGAGAAAGAATCTTTGACATTTGATATAGAGCATGAATCAGAAAAAACAAAGAGAAAAAATACAAAAATGGCTTCTGACTTATGAGTTTTGGTGTAATCGGTTGTGTATTGAGAGGGTGATCGTAAAGAGAAATTAATTAGAAAAATAATGAGTGATCAGTGTTCGGGTACATGCATCAGTCATGGATCAGGAACTAGGTCATAAAAAATGGGAAGACCTGAAAATTATATTGTATGTTTTCAGATAATTCGAAAAACGTTCCAAAGACGGGTCATTTGGTAAATCAAAGGGAACTATCGTATTCCCTCTAACAGAAGCCCACAGAAACCGTCAATTTTGAGCTTAATTTCTCGATTCCTGTGAGAGATATCAAACATTTGTTAACTGATAATTTTTATTCATAATATTACCAATATTTTATCAGTTAACAAAATTTTGATATCTTTTACAATAATCGAGATTGTGCTCAAAGTTAACGGTTTGGTTAGGATTCTATTAAAGGGAATACGATAGTTTTGTAATTCTGAAAATATTTTTTCAA</canonical>
            <polymorphic>TCAAGTCGGAAACATCATCGGGAAGTCAAGCAAGTGATGTTTTTCTAAATTTTCAACATCGGAAATTCAAATTCCACAGATTTCCAGAGACACCTACGAAGCAGAGAACGCCCACTTGACATTTCCTGTTGCTGAAATTTATTTTAAAAATATTTTCTATGATTTCATTTTTGTACTCATTTAACTTCATGATTTTTCTGTTTTCAAGTGCTTCACCATGAAAAAGTCTTCTTTAGAATTTGCAAATTTTCGAAGATTAGGGTTCTAGAAAATTCAATCTCTATACGAAATTAGTAAGATAAATAAAATGGATATTTTGAAAACATCCCTGATGTGTTGGTTTCCGTTTTTTTAATCAAAAGACTACTACTTATATCAGACGAACTTCCTTTCCCCACAAAACTACGTTTTTCATTTATGTACATCTTTTTGGAAAAAAAAGGATGGTTGCTGTTTTTTGAGAAAGAATCTTTGACATTTGATATAGAGCATGAATCAGRAAAAACAAAGAGAAAAAATACAAAAATGGCTTCTGACTTATGAGTTTTGGTGTAATCGGTTGTGTATTGAGAGGGTGATCGTAAAGAGAAATTAATTAGAAAAATAATGAGTGATCAGTGTTCGGGTACATGCATCAGTCATGGATCAGGAACTAGGTCATAAAAAATGGGAAGACCTGAAAATTATATTGTATGTTTTCAGATAATTCGAAAAACGTTCCAAAGACGGGTCATTTGGTAAATCAAAGGGAACTATCGTATTCCCTCTAACAGAAGCCCACAGAAACCGTCAATTTTGAGCTTAATTTCTCGATTCCTGTGAGAGATATCAAACATTTGTTAACTGATAATTTTTATTCATAATATTACCAATATTTTATCAGTTAACAAAATTTTGATATCTTTTACAATAATCGAGATTGTGCTCAAAGTTAACGGTTTGGTTAGGATTCTATTAAAGGGAATACGATAGTTTTGTAATTCTGAAAATATTTTTTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>317 283 167 120 53 36 16 8</canonical_bands>
                <polymorphic_bands>317 283 167 156 53 16 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATATCAGACGAACTTCCTTTC</pcr_primer_p1>
		<pcr_primer_p2>CACTGATCACTCATTATTTTTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTATATCAGACGAACTTCCTTTCCCCACAAAACTACGTTTTTCATTTATGTACATCTTTTTGGAAAAAAAAGGATGGTTGCTGTTTTTTGAGAAAGAATCTTTGACATTTGATATAGAGCATGAATCAGAAAAAACAAAGAGAAAAAATACAAAAATGGCTTCTGACTTATGAGTTTTGGTGTAATCGGTTGTGTATTGAGAGGGTGATCGTAAAGAGAAATTAATTAGAAAAATAATGAGTGATCAGTG</canonical_amplicon>
		<polymorphic_amplicon>TTATATCAGACGAACTTCCTTTCCCCACAAAACTACGTTTTTCATTTATGTACATCTTTTTGGAAAAAAAAGGATGGTTGCTGTTTTTTGAGAAAGAATCTTTGACATTTGATATAGAGCATGAATCAGRAAAAACAAAGAGAAAAAATACAAAAATGGCTTCTGACTTATGAGTTTTGGTGTAATCGGTTGTGTATTGAGAGGGTGATCGTAAAGAGAAATTAATTAGAAAAATAATGAGTGATCAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30574</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>118056</contig_pos>
        <strand>+</strand>
        <context>AAATTATTTA[A/G]GTGAGATGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTGTGACTGAATTTTTAGAAATCTAGGAGAAAAGAAAGTAAATTATTTA</left_flank>
        <right_flank>GTGAGATGAATGAACAAAAAAAGAGTTTAAGATTATTTTTGGATAAATCT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAGAGAGTAAGAGAACAATTTTTGAAAAATCCACTGGTTGTTTCCGAGTAAAGACAGTGTCCAAAGAATCGAAACGACCTCTCTAGAGTGCCTGCGTCTCTCTTTCTCTCACACTCTCTCACTTTTCGTTTGGCGCCGAGTGATTTGAATTCGAAATTGCTTGGGAAAAAGAGAACCTTTGCACCTAAATTGTCCAAAAACTGACCGGTTTTTTCTTTTGGATTGTCCTTTGACTGAGAAGACTAGAAAAAATTAGGTCTGTAGGGAACTTTGGTCCCACGTCATTTTCAGAGTGAATTATGGAAAAGGAGAAAAAAGGAAAAGAGAAAGACAAACCTTTTAAGAAAAAAATTTGAATGGAAATTAGGGGGAACTATGGAAACGATGGAGGTGTTTTGGAACAAGAAGAAAAGAATGAAGTTTACAACTTTTGAAAAAAAACAAGAAGGTGTGACTGAATTTTTAGAAATCTAGGAGAAAAGAAAGTAAATTATTTAAGTGAGATGAATGAACAAAAAAAGAGTTTAAGATTATTTTTGGATAAATCTACAGGGATTTGAAAATTTCAGATACTATCGTATTTCCTCTAATAGAAGCCCACCCAAGTCATCAACTTTGAGCTTAATTATCTCGGTTTCTGTGAATGATACCAAATAGTAGTCCACTAATAAAACATTGGTAATATTACGATAAACAATTTACCAGTTGACCACTTTTTGATATCTTCTACAGAAACCGAGATAAATAAACTCAAAGTTTACGGTTTGGGTGAGCTTCAATTAGAGGAAGTACCGTAGTACACTCATATTGGGTTACTGTACTCCTAATAATAGTAAAAAACGAAATTTTGAAAACGTCGGACTGGAAAAACACTAGAAAAAATTTTAATTGAAATTTTAATTGTTTTTAGCTTCATGAAATCTCCCAAAAATTTTAAAAATATGTGTTTAAAAAATTGAAAAAAAAACCAGATCTAAACATTTAATTTTTCAAACTCG</canonical>
            <polymorphic>AAAAGAGAGTAAGAGAACAATTTTTGAAAAATCCACTGGTTGTTTCCGAGTAAAGACAGTGTCCAAAGAATCGAAACGACCTCTCTAGAGTGCCTGCGTCTCTCTTTCTCTCACACTCTCTCACTTTTCGTTTGGCGCCGAGTGATTTGAATTCGAAATTGCTTGGGAAAAAGAGAACCTTTGCACCTAAATTGTCCAAAAACTGACCGGTTTTTTCTTTTGGATTGTCCTTTGACTGAGAAGACTAGAAAAAATTAGGTCTGTAGGGAACTTTGGTCCCACGTCATTTTCAGAGTGAATTATGGAAAAGGAGAAAAAAGGAAAAGAGAAAGACAAACCTTTTAAGAAAAAAATTTGAATGGAAATTAGGGGGAACTATGGAAACGATGGAGGTGTTTTGGAACAAGAAGAAAAGAATGAAGTTTACAACTTTTGAAAAAAAACAAGAAGGTGTGACTGAATTTTTAGAAATCTAGGAGAAAAGAAAGTAAATTATTTARGTGAGATGAATGAACAAAAAAAGAGTTTAAGATTATTTTTGGATAAATCTACAGGGATTTGAAAATTTCAGATACTATCGTATTTCCTCTAATAGAAGCCCACCCAAGTCATCAACTTTGAGCTTAATTATCTCGGTTTCTGTGAATGATACCAAATAGTAGTCCACTAATAAAACATTGGTAATATTACGATAAACAATTTACCAGTTGACCACTTTTTGATATCTTCTACAGAAACCGAGATAAATAAACTCAAAGTTTACGGTTTGGGTGAGCTTCAATTAGAGGAAGTACCGTAGTACACTCATATTGGGTTACTGTACTCCTAATAATAGTAAAAAACGAAATTTTGAAAACGTCGGACTGGAAAAACACTAGAAAAAATTTTAATTGAAATTTTAATTGTTTTTAGCTTCATGAAATCTCCCAAAAATTTTAAAAATATGTGTTTAAAAAATTGAAAAAAAAACCAGATCTAAACATTTAATTTTTCAAACTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>342 263 155 97 37 34 30 16 14 12</canonical_bands>
                <polymorphic_bands>342 263 185 97 37 34 16 14 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAGAGAAAGACAAACCTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTTCAAATCCCTGTAGATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAAAGAGAAAGACAAACCTTTTAAGAAAAAAATTTGAATGGAAATTAGGGGGAACTATGGAAACGATGGAGGTGTTTTGGAACAAGAAGAAAAGAATGAAGTTTACAACTTTTGAAAAAAAACAAGAAGGTGTGACTGAATTTTTAGAAATCTAGGAGAAAAGAAAGTAAATTATTTAAGTGAGATGAATGAACAAAAAAAGAGTTTAAGATTATTTTTGGATAAATCTACAGGGATTTGAAAATTT</canonical_amplicon>
		<polymorphic_amplicon>GAAAAGAGAAAGACAAACCTTTTAAGAAAAAAATTTGAATGGAAATTAGGGGGAACTATGGAAACGATGGAGGTGTTTTGGAACAAGAAGAAAAGAATGAAGTTTACAACTTTTGAAAAAAAACAAGAAGGTGTGACTGAATTTTTAGAAATCTAGGAGAAAAGAAAGTAAATTATTTARGTGAGATGAATGAACAAAAAAAGAGTTTAAGATTATTTTTGGATAAATCTACAGGGATTTGAAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30575</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>118349</contig_pos>
        <strand>+</strand>
        <context>tagaggAAGT[A/G]CCGTAGTACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAAATAAACTCAAAGTTTACGGTTTGGGTGAGCTTCAATTAGAGGAAGT</left_flank>
        <right_flank>CCGTAGTACACTCATATTGGGTTACTGTACTCCTAATAATAGTAAAAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTGAATTATGGAAAAGGAGAAAAAAGGAAAAGAGAAAGACAAACCTTTTAAGAAAAAAATTTGAATGGAAATTAGGGGGAACTATGGAAACGATGGAGGTGTTTTGGAACAAGAAGAAAAGAATGAAGTTTACAACTTTTGAAAAAAAACAAGAAGGTGTGACTGAATTTTTAGAAATCTAGGAGAAAAGAAAGTAAATTATTTAAGTGAGATGAATGAACAAAAAAAGAGTTTAAGATTATTTTTGGATAAATCTACAGGGATTTGAAAATTTCAGATACTATCGTATTTCCTCTAATAGAAGCCCACCCAAGTCATCAACTTTGAGCTTAATTATCTCGGTTTCTGTGAATGATACCAAATAGTAGTCCACTAATAAAACATTGGTAATATTACGATAAACAATTTACCAGTTGACCACTTTTTGATATCTTCTACAGAAACCGAGATAAATAAACTCAAAGTTTACGGTTTGGGTGAGCTTCAATTAGAGGAAGTACCGTAGTACACTCATATTGGGTTACTGTACTCCTAATAATAGTAAAAAACGAAATTTTGAAAACGTCGGACTGGAAAAACACTAGAAAAAATTTTAATTGAAATTTTAATTGTTTTTAGCTTCATGAAATCTCCCAAAAATTTTAAAAATATGTGTTTAAAAAATTGAAAAAAAAACCAGATCTAAACATTTAATTTTTCAAACTCGAGAGAAGATTGTGAGAAAAAGAAAACATGGAAAGAAGATTTCAGAATTTTATTTATTTATTGTCGCTGGAAGAATGTGCTCAGACATACAAAAATCGTTTCAGACAAGGTTTGTTTTTGTCCTGTCTGGCAACAATCCATTAAGGAATTTTTGTACTTTTAGAGATTAGGAAATCAAATTATCAAGCACAGTCAAAAACTGAGTCTTAGAATTCCAAGAAAAAAAGACATGAAAATTCTATTTTTACTAGTGTGCAAATGAAGCTAAATTTGTCCATTTTGCATAGATTTCTA</canonical>
            <polymorphic>AGTGAATTATGGAAAAGGAGAAAAAAGGAAAAGAGAAAGACAAACCTTTTAAGAAAAAAATTTGAATGGAAATTAGGGGGAACTATGGAAACGATGGAGGTGTTTTGGAACAAGAAGAAAAGAATGAAGTTTACAACTTTTGAAAAAAAACAAGAAGGTGTGACTGAATTTTTAGAAATCTAGGAGAAAAGAAAGTAAATTATTTAAGTGAGATGAATGAACAAAAAAAGAGTTTAAGATTATTTTTGGATAAATCTACAGGGATTTGAAAATTTCAGATACTATCGTATTTCCTCTAATAGAAGCCCACCCAAGTCATCAACTTTGAGCTTAATTATCTCGGTTTCTGTGAATGATACCAAATAGTAGTCCACTAATAAAACATTGGTAATATTACGATAAACAATTTACCAGTTGACCACTTTTTGATATCTTCTACAGAAACCGAGATAAATAAACTCAAAGTTTACGGTTTGGGTGAGCTTCAATTAGAGGAAGTRCCGTAGTACACTCATATTGGGTTACTGTACTCCTAATAATAGTAAAAAACGAAATTTTGAAAACGTCGGACTGGAAAAACACTAGAAAAAATTTTAATTGAAATTTTAATTGTTTTTAGCTTCATGAAATCTCCCAAAAATTTTAAAAATATGTGTTTAAAAAATTGAAAAAAAAACCAGATCTAAACATTTAATTTTTCAAACTCGAGAGAAGATTGTGAGAAAAAGAAAACATGGAAAGAAGATTTCAGAATTTTATTTATTTATTGTCGCTGGAAGAATGTGCTCAGACATACAAAAATCGTTTCAGACAAGGTTTGTTTTTGTCCTGTCTGGCAACAATCCATTAAGGAATTTTTGTACTTTTAGAGATTAGGAAATCAAATTATCAAGCACAGTCAAAAACTGAGTCTTAGAATTCCAAGAAAAAAAGACATGAAAATTCTATTTTTACTAGTGTGCAAATGAAGCTAAATTTGTCCATTTTGCATAGATTTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 333 139 21 8</canonical_bands>
                <polymorphic_bands>507 333 139 21</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>471 371 103 31 24</canonical_bands>
                <polymorphic_bands>471 371 103 55</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGATAAATCTACAGGGATTTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTAGTGTTTTTCCAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>343</pcr_amplicon_size>
		<canonical_amplicon>TGGATAAATCTACAGGGATTTGAAAATTTCAGATACTATCGTATTTCCTCTAATAGAAGCCCACCCAAGTCATCAACTTTGAGCTTAATTATCTCGGTTTCTGTGAATGATACCAAATAGTAGTCCACTAATAAAACATTGGTAATATTACGATAAACAATTTACCAGTTGACCACTTTTTGATATCTTCTACAGAAACCGAGATAAATAAACTCAAAGTTTACGGTTTGGGTGAGCTTCAATTAGAGGAAGTACCGTAGTACACTCATATTGGGTTACTGTACTCCTAATAATAGTAAAAAACGAAATTTTGAAAACGTCGGACTGGAAAAACACTAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGGATAAATCTACAGGGATTTGAAAATTTCAGATACTATCGTATTTCCTCTAATAGAAGCCCACCCAAGTCATCAACTTTGAGCTTAATTATCTCGGTTTCTGTGAATGATACCAAATAGTAGTCCACTAATAAAACATTGGTAATATTACGATAAACAATTTACCAGTTGACCACTTTTTGATATCTTCTACAGAAACCGAGATAAATAAACTCAAAGTTTACGGTTTGGGTGAGCTTCAATTAGAGGAAGTRCCGTAGTACACTCATATTGGGTTACTGTACTCCTAATAATAGTAAAAAACGAAATTTTGAAAACGTCGGACTGGAAAAACACTAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30576</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>118400</contig_pos>
        <strand></strand>
        <context>AGTAAAAAAC[G/A]AAATTTTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CCGTAGTACACTCATATTGGGTTACTGTACTCCTAATAATAGTAAAAAAC</left_flank>
        <right_flank>AAATTTTGAAAACGTCGGACTGGAAAAACACTAGAAAAAATTTTAATTGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAAAAAATTTGAATGGAAATTAGGGGGAACTATGGAAACGATGGAGGTGTTTTGGAACAAGAAGAAAAGAATGAAGTTTACAACTTTTGAAAAAAAACAAGAAGGTGTGACTGAATTTTTAGAAATCTAGGAGAAAAGAAAGTAAATTATTTAAGTGAGATGAATGAACAAAAAAAGAGTTTAAGATTATTTTTGGATAAATCTACAGGGATTTGAAAATTTCAGATACTATCGTATTTCCTCTAATAGAAGCCCACCCAAGTCATCAACTTTGAGCTTAATTATCTCGGTTTCTGTGAATGATACCAAATAGTAGTCCACTAATAAAACATTGGTAATATTACGATAAACAATTTACCAGTTGACCACTTTTTGATATCTTCTACAGAAACCGAGATAAATAAACTCAAAGTTTACGGTTTGGGTGAGCTTCAATTAGAGGAAGTACCGTAGTACACTCATATTGGGTTACTGTACTCCTAATAATAGTAAAAAACGAAATTTTGAAAACGTCGGACTGGAAAAACACTAGAAAAAATTTTAATTGAAATTTTAATTGTTTTTAGCTTCATGAAATCTCCCAAAAATTTTAAAAATATGTGTTTAAAAAATTGAAAAAAAAACCAGATCTAAACATTTAATTTTTCAAACTCGAGAGAAGATTGTGAGAAAAAGAAAACATGGAAAGAAGATTTCAGAATTTTATTTATTTATTGTCGCTGGAAGAATGTGCTCAGACATACAAAAATCGTTTCAGACAAGGTTTGTTTTTGTCCTGTCTGGCAACAATCCATTAAGGAATTTTTGTACTTTTAGAGATTAGGAAATCAAATTATCAAGCACAGTCAAAAACTGAGTCTTAGAATTCCAAGAAAAAAAGACATGAAAATTCTATTTTTACTAGTGTGCAAATGAAGCTAAATTTGTCCATTTTGCATAGATTTCTAGAACCTTCTGATTAAAAAAAAACAAAAAGTTAACAAGAAGGAAATCTAATA</canonical>
            <polymorphic>AGAAAAAAATTTGAATGGAAATTAGGGGGAACTATGGAAACGATGGAGGTGTTTTGGAACAAGAAGAAAAGAATGAAGTTTACAACTTTTGAAAAAAAACAAGAAGGTGTGACTGAATTTTTAGAAATCTAGGAGAAAAGAAAGTAAATTATTTAAGTGAGATGAATGAACAAAAAAAGAGTTTAAGATTATTTTTGGATAAATCTACAGGGATTTGAAAATTTCAGATACTATCGTATTTCCTCTAATAGAAGCCCACCCAAGTCATCAACTTTGAGCTTAATTATCTCGGTTTCTGTGAATGATACCAAATAGTAGTCCACTAATAAAACATTGGTAATATTACGATAAACAATTTACCAGTTGACCACTTTTTGATATCTTCTACAGAAACCGAGATAAATAAACTCAAAGTTTACGGTTTGGGTGAGCTTCAATTAGAGGAAGTACCGTAGTACACTCATATTGGGTTACTGTACTCCTAATAATAGTAAAAAACRAAATTTTGAAAACGTCGGACTGGAAAAACACTAGAAAAAATTTTAATTGAAATTTTAATTGTTTTTAGCTTCATGAAATCTCCCAAAAATTTTAAAAATATGTGTTTAAAAAATTGAAAAAAAAACCAGATCTAAACATTTAATTTTTCAAACTCGAGAGAAGATTGTGAGAAAAAGAAAACATGGAAAGAAGATTTCAGAATTTTATTTATTTATTGTCGCTGGAAGAATGTGCTCAGACATACAAAAATCGTTTCAGACAAGGTTTGTTTTTGTCCTGTCTGGCAACAATCCATTAAGGAATTTTTGTACTTTTAGAGATTAGGAAATCAAATTATCAAGCACAGTCAAAAACTGAGTCTTAGAATTCCAAGAAAAAAAGACATGAAAATTCTATTTTTACTAGTGTGCAAATGAAGCTAAATTTGTCCATTTTGCATAGATTTCTAGAACCTTCTGATTAAAAAAAAACAAAAAGTTAACAAGAAGGAAATCTAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATAAATCTACAGGGATTTGA</pcr_primer_p1>
		<pcr_primer_p2>TCATGAAGCTAAAAACAATTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>380</pcr_amplicon_size>
		<canonical_amplicon>GGATAAATCTACAGGGATTTGAAAATTTCAGATACTATCGTATTTCCTCTAATAGAAGCCCACCCAAGTCATCAACTTTGAGCTTAATTATCTCGGTTTCTGTGAATGATACCAAATAGTAGTCCACTAATAAAACATTGGTAATATTACGATAAACAATTTACCAGTTGACCACTTTTTGATATCTTCTACAGAAACCGAGATAAATAAACTCAAAGTTTACGGTTTGGGTGAGCTTCAATTAGAGGAAGTACCGTAGTACACTCATATTGGGTTACTGTACTCCTAATAATAGTAAAAAACGAAATTTTGAAAACGTCGGACTGGAAAAACACTAGAAAAAATTTTAATTGAAATTTTAATTGTTTTTAGCTTCATGA</canonical_amplicon>
		<polymorphic_amplicon>GGATAAATCTACAGGGATTTGAAAATTTCAGATACTATCGTATTTCCTCTAATAGAAGCCCACCCAAGTCATCAACTTTGAGCTTAATTATCTCGGTTTCTGTGAATGATACCAAATAGTAGTCCACTAATAAAACATTGGTAATATTACGATAAACAATTTACCAGTTGACCACTTTTTGATATCTTCTACAGAAACCGAGATAAATAAACTCAAAGTTTACGGTTTGGGTGAGCTTCAATTAGAGGAAGTACCGTAGTACACTCATATTGGGTTACTGTACTCCTAATAATAGTAAAAAACRAAATTTTGAAAACGTCGGACTGGAAAAACACTAGAAAAAATTTTAATTGAAATTTTAATTGTTTTTAGCTTCATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30577</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>151379</contig_pos>
        <strand>+</strand>
        <context>CTGCGGTTCT[A/T]CTGGCCAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCTGTGGCGGTTGCCGAAAACAACAAGGAATGCTTATCACTGCGGTTCT</left_flank>
        <right_flank>CTGGCCAACTACCGAACACTTTTCGCAGTTCCTGAAGAATTCGTTGAATG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATCTGCATCGAGTATAGAAGAAGCCGGACTCATGGTGGATGGGTTCTCTCGTGATATTCCAGCATGCGGAATCCGCGCTTCGAAGCAGAGAAGACGAGCGCTATCGCCATTCGACAATAGAGTCAATCTGGTGATTCAAGGTATACATTTGATTATTTCTCTTACTATTAGTATGAATCTCTAAATTTATAGAAGAGAAGTTGTACAAAATCCGAGAGCAATGGCTCATTGAAGCAATTCAACTTGTTCTTCTTTCACTCCCCACATCTCGACGTCGTAAACTTCACAAATTCGTCTGCTTTATCAAATCGATTGAAACGAATCAGCTTTTCGACCTTGCTGATCCATCAAACGGCTCTTCGAATAACCGTGAAGCGGTAATAACGGTACATTTGAATACGATTCAAAAATTTCTGAATTCAGGCAATAATTGGATTATGGACGGGTGTCTGTGGCGGTTGCCGAAAACAACAAGGAATGCTTATCACTGCGGTTCTACTGGCCAACTACCGAACACTTTTCGCAGTTCCTGAAGAATTCGTTGAATGTGTTCAGCGACTGGAGTACGCACAAAACGATCAGAATGAGGATCCACAGTATGCGAGAATCAACAAAACGCGAAGAGTTCGGAAGCAACCTATAATGGAAGCGTCGCTTTCTTCTCCAGCAGCATTCAAAAAATATTCGAAAGATTCAAAAGATATCACAGTAGAAAAGTCAAAGAAAGGATTGTTCACTCGACTTCTCCGGAAATAAACAGGAATCATAGACTTCATGTATGTATTATAAGATATTTATGCTCTTTTTTATTTTGTACCCACTCATCACACCCCATTGTCCCCTCTCGATATCTATTTCTAACAATTTGGGTTGTCTTTTTTCTTGTGGATAGCTGAAACCCCGAGTCGAATTGATCTGTACCATAAAGATTCGTATCAATTTATGTGGTTGCTGTTCTACTTGTTGGTTTTTGTGCCATTTTAATCTCATATTCATTA</canonical>
            <polymorphic>TCATCTGCATCGAGTATAGAAGAAGCCGGACTCATGGTGGATGGGTTCTCTCGTGATATTCCAGCATGCGGAATCCGCGCTTCGAAGCAGAGAAGACGAGCGCTATCGCCATTCGACAATAGAGTCAATCTGGTGATTCAAGGTATACATTTGATTATTTCTCTTACTATTAGTATGAATCTCTAAATTTATAGAAGAGAAGTTGTACAAAATCCGAGAGCAATGGCTCATTGAAGCAATTCAACTTGTTCTTCTTTCACTCCCCACATCTCGACGTCGTAAACTTCACAAATTCGTCTGCTTTATCAAATCGATTGAAACGAATCAGCTTTTCGACCTTGCTGATCCATCAAACGGCTCTTCGAATAACCGTGAAGCGGTAATAACGGTACATTTGAATACGATTCAAAAATTTCTGAATTCAGGCAATAATTGGATTATGGACGGGTGTCTGTGGCGGTTGCCGAAAACAACAAGGAATGCTTATCACTGCGGTTCTWCTGGCCAACTACCGAACACTTTTCGCAGTTCCTGAAGAATTCGTTGAATGTGTTCAGCGACTGGAGTACGCACAAAACGATCAGAATGAGGATCCACAGTATGCGAGAATCAACAAAACGCGAAGAGTTCGGAAGCAACCTATAATGGAAGCGTCGCTTTCTTCTCCAGCAGCATTCAAAAAATATTCGAAAGATTCAAAAGATATCACAGTAGAAAAGTCAAAGAAAGGATTGTTCACTCGACTTCTCCGGAAATAAACAGGAATCATAGACTTCATGTATGTATTATAAGATATTTATGCTCTTTTTTATTTTGTACCCACTCATCACACCCCATTGTCCCCTCTCGATATCTATTTCTAACAATTTGGGTTGTCTTTTTTCTTGTGGATAGCTGAAACCCCGAGTCGAATTGATCTGTACCATAAAGATTCGTATCAATTTATGTGGTTGCTGTTCTACTTGTTGGTTTTTGTGCCATTTTAATCTCATATTCATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAACGGTACATTTGAATACGA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTGTTGATTCTCGCATACT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AATAACGGTACATTTGAATACGATTCAAAAATTTCTGAATTCAGGCAATAATTGGATTATGGACGGGTGTCTGTGGCGGTTGCCGAAAACAACAAGGAATGCTTATCACTGCGGTTCTACTGGCCAACTACCGAACACTTTTCGCAGTTCCTGAAGAATTCGTTGAATGTGTTCAGCGACTGGAGTACGCACAAAACGATCAGAATGAGGATCCACAGTATGCGAGAATCAACAAAAC</canonical_amplicon>
		<polymorphic_amplicon>AATAACGGTACATTTGAATACGATTCAAAAATTTCTGAATTCAGGCAATAATTGGATTATGGACGGGTGTCTGTGGCGGTTGCCGAAAACAACAAGGAATGCTTATCACTGCGGTTCTWCTGGCCAACTACCGAACACTTTTCGCAGTTCCTGAAGAATTCGTTGAATGTGTTCAGCGACTGGAGTACGCACAAAACGATCAGAATGAGGATCCACAGTATGCGAGAATCAACAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30578</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>160695</contig_pos>
        <strand>+</strand>
        <context>ATTATTGGAT[A/G]GAWGTTAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATCTTCTTGGCATCAACTGTGAAAGGTTGGTGGTGTTTTATTATTGGAT</left_flank>
        <right_flank>GAAGTTAATGATGTCGTCTTCAGTGAAAGCAGCAACTTTTTTCGCCGAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGTTTCTCTCCGAAGACGAGGTTCATGAGGTATCTAGCGCGGTAAAGAGGACGGAGAGAGCCTGGAATGAGAAGTGCACCGAACGCGAAATGAGCCAGATTGATCTGAAAACATATTAAAAGATAATGAATGAGGGAATTCTGAAACTCACGTATTCAATGATGGTGTTCCCGGAATCTAAACCGATCAATCGTTCACTCATAACGGTTGCTTTGTGTTGATGGTTGAGAGCCTAAAAATAAAAGCTCAAACTCGATTCGAATATATTATACTTACATCAGGTGTCTCTCCAAGAACATGTCCCAGTCTTGCCAACGCTCTCAAACATTGAGGCATGTCTGGATGCATAACACCGTAAACAGCAGTCATGATGTTTATAGCCTCTGATATGCATTCATAAGCTTCACGGGATGCACCGAGAGACATAGCATGTTGTCCACGAATTATCATCTTCTTGGCATCAACTGTGAAAGGTTGGTGGTGTTTTATTATTGGATAGAAGTTAATGATGTCGTCTTCAGTGAAAGCAGCAACTTTTTTCGCCGAGGAATCGAGTTGATAATCTCTGGCAACGATTTGAACTCCCATAATCTTGACAACGCGACGGAAGAGAGCAGTTTTTTGAATCTCATGTTGCTCGAGGAACTTGTCAAGAGTTTCCGTATCAATATGATATCCATAGTAATACGCAGATTCCTCGCAAATGCTCTTCCACAATGATGCAGTTGTCAGCGTTGCCCACACTCCAGAATTCTTCTTCTTACCGTTCTTCTTGCTACTCTTCTTATGCGCATGCGAAGCCACAGGGCTTGGCTCAGAAACAGTAGAGAACAGGCAGTTGAGAATGTGCGAAGTACTAACAACCAACTGATCAACTGGAGTTTGAACATTGATCTTGCGAATAACGTGCTTCGCTGAACGGGCAACGATGTCCGAGAGAACGAGTGGACGAGCGAAAGAGTTCGTATCTTGAACGCGTTTCCCGATTTCTCCCAGGT</canonical>
            <polymorphic>GGTGTTTCTCTCCGAAGACGAGGTTCATGAGGTATCTAGCGCGGTAAAGAGGACGGAGAGAGCCTGGAATGAGAAGTGCACCGAACGCGAAATGAGCCAGATTGATCTGAAAACATATTAAAAGATAATGAATGAGGGAATTCTGAAACTCACGTATTCAATGATGGTGTTCCCGGAATCTAAACCGATCAATCGTTCACTCATAACGGTTGCTTTGTGTTGATGGTTGAGAGCCTAAAAATAAAAGCTCAAACTCGATTCGAATATATTATACTTACATCAGGTGTCTCTCCAAGAACATGTCCCAGTCTTGCCAACGCTCTCAAACATTGAGGCATGTCTGGATGCATAACACCGTAAACAGCAGTCATGATGTTTATAGCCTCTGATATGCATTCATAAGCTTCACGGGATGCACCGAGAGACATAGCATGTTGTCCACGAATTATCATCTTCTTGGCATCAACTGTGAAAGGTTGGTGGTGTTTTATTATTGGATRGAAGTTAATGATGTCGTCTTCAGTGAAAGCAGCAACTTTTTTCGCCGAGGAATCGAGTTGATAATCTCTGGCAACGATTTGAACTCCCATAATCTTGACAACGCGACGGAAGAGAGCAGTTTTTTGAATCTCATGTTGCTCGAGGAACTTGTCAAGAGTTTCCGTATCAATATGATATCCATAGTAATACGCAGATTCCTCGCAAATGCTCTTCCACAATGATGCAGTTGTCAGCGTTGCCCACACTCCAGAATTCTTCTTCTTACCGTTCTTCTTGCTACTCTTCTTATGCGCATGCGAAGCCACAGGGCTTGGCTCAGAAACAGTAGAGAACAGGCAGTTGAGAATGTGCGAAGTACTAACAACCAACTGATCAACTGGAGTTTGAACATTGATCTTGCGAATAACGTGCTTCGCTGAACGGGCAACGATGTCCGAGAGAACGAGTGGACGAGCGAAAGAGTTCGTATCTTGAACGCGTTTCCCGATTTCTCCCAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGTCCACGAATTATCATCTT</pcr_primer_p1>
		<pcr_primer_p2>GGATATCATATTGATACGGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTTGTCCACGAATTATCATCTTCTTGGCATCAACTGTGAAAGGTTGGTGGTGTTTTATTATTGGATAGAAGTTAATGATGTCGTCTTCAGTGAAAGCAGCAACTTTTTTCGCCGAGGAATCGAGTTGATAATCTCTGGCAACGATTTGAACTCCCATAATCTTGACAACGCGACGGAAGAGAGCAGTTTTTTGAATCTCATGTTGCTCGAGGAACTTGTCAAGAGTTTCCGTATCAATATGATATCC</canonical_amplicon>
		<polymorphic_amplicon>GTTGTCCACGAATTATCATCTTCTTGGCATCAACTGTGAAAGGTTGGTGGTGTTTTATTATTGGATRGAAGTTAATGATGTCGTCTTCAGTGAAAGCAGCAACTTTTTTCGCCGAGGAATCGAGTTGATAATCTCTGGCAACGATTTGAACTCCCATAATCTTGACAACGCGACGGAAGAGAGCAGTTTTTTGAATCTCATGTTGCTCGAGGAACTTGTCAAGAGTTTCCGTATCAATATGATATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30579</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>160698</contig_pos>
        <strand>+</strand>
        <context>ATTGGATRGA[A/T]GTTAATGATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTCTTGGCATCAACTGTGAAAGGTTGGTGGTGTTTTATTATTGGATAGA</left_flank>
        <right_flank>GTTAATGATGTCGTCTTCAGTGAAAGCAGCAACTTTTTTCGCCGAGGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTCTCTCCGAAGACGAGGTTCATGAGGTATCTAGCGCGGTAAAGAGGACGGAGAGAGCCTGGAATGAGAAGTGCACCGAACGCGAAATGAGCCAGATTGATCTGAAAACATATTAAAAGATAATGAATGAGGGAATTCTGAAACTCACGTATTCAATGATGGTGTTCCCGGAATCTAAACCGATCAATCGTTCACTCATAACGGTTGCTTTGTGTTGATGGTTGAGAGCCTAAAAATAAAAGCTCAAACTCGATTCGAATATATTATACTTACATCAGGTGTCTCTCCAAGAACATGTCCCAGTCTTGCCAACGCTCTCAAACATTGAGGCATGTCTGGATGCATAACACCGTAAACAGCAGTCATGATGTTTATAGCCTCTGATATGCATTCATAAGCTTCACGGGATGCACCGAGAGACATAGCATGTTGTCCACGAATTATCATCTTCTTGGCATCAACTGTGAAAGGTTGGTGGTGTTTTATTATTGGATAGAAGTTAATGATGTCGTCTTCAGTGAAAGCAGCAACTTTTTTCGCCGAGGAATCGAGTTGATAATCTCTGGCAACGATTTGAACTCCCATAATCTTGACAACGCGACGGAAGAGAGCAGTTTTTTGAATCTCATGTTGCTCGAGGAACTTGTCAAGAGTTTCCGTATCAATATGATATCCATAGTAATACGCAGATTCCTCGCAAATGCTCTTCCACAATGATGCAGTTGTCAGCGTTGCCCACACTCCAGAATTCTTCTTCTTACCGTTCTTCTTGCTACTCTTCTTATGCGCATGCGAAGCCACAGGGCTTGGCTCAGAAACAGTAGAGAACAGGCAGTTGAGAATGTGCGAAGTACTAACAACCAACTGATCAACTGGAGTTTGAACATTGATCTTGCGAATAACGTGCTTCGCTGAACGGGCAACGATGTCCGAGAGAACGAGTGGACGAGCGAAAGAGTTCGTATCTTGAACGCGTTTCCCGATTTCTCCCAGGTAAC</canonical>
            <polymorphic>GTTTCTCTCCGAAGACGAGGTTCATGAGGTATCTAGCGCGGTAAAGAGGACGGAGAGAGCCTGGAATGAGAAGTGCACCGAACGCGAAATGAGCCAGATTGATCTGAAAACATATTAAAAGATAATGAATGAGGGAATTCTGAAACTCACGTATTCAATGATGGTGTTCCCGGAATCTAAACCGATCAATCGTTCACTCATAACGGTTGCTTTGTGTTGATGGTTGAGAGCCTAAAAATAAAAGCTCAAACTCGATTCGAATATATTATACTTACATCAGGTGTCTCTCCAAGAACATGTCCCAGTCTTGCCAACGCTCTCAAACATTGAGGCATGTCTGGATGCATAACACCGTAAACAGCAGTCATGATGTTTATAGCCTCTGATATGCATTCATAAGCTTCACGGGATGCACCGAGAGACATAGCATGTTGTCCACGAATTATCATCTTCTTGGCATCAACTGTGAAAGGTTGGTGGTGTTTTATTATTGGATAGAWGTTAATGATGTCGTCTTCAGTGAAAGCAGCAACTTTTTTCGCCGAGGAATCGAGTTGATAATCTCTGGCAACGATTTGAACTCCCATAATCTTGACAACGCGACGGAAGAGAGCAGTTTTTTGAATCTCATGTTGCTCGAGGAACTTGTCAAGAGTTTCCGTATCAATATGATATCCATAGTAATACGCAGATTCCTCGCAAATGCTCTTCCACAATGATGCAGTTGTCAGCGTTGCCCACACTCCAGAATTCTTCTTCTTACCGTTCTTCTTGCTACTCTTCTTATGCGCATGCGAAGCCACAGGGCTTGGCTCAGAAACAGTAGAGAACAGGCAGTTGAGAATGTGCGAAGTACTAACAACCAACTGATCAACTGGAGTTTGAACATTGATCTTGCGAATAACGTGCTTCGCTGAACGGGCAACGATGTCCGAGAGAACGAGTGGACGAGCGAAAGAGTTCGTATCTTGAACGCGTTTCCCGATTTCTCCCAGGTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGTCCACGAATTATCATCTT</pcr_primer_p1>
		<pcr_primer_p2>GGATATCATATTGATACGGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTTGTCCACGAATTATCATCTTCTTGGCATCAACTGTGAAAGGTTGGTGGTGTTTTATTATTGGATAGAAGTTAATGATGTCGTCTTCAGTGAAAGCAGCAACTTTTTTCGCCGAGGAATCGAGTTGATAATCTCTGGCAACGATTTGAACTCCCATAATCTTGACAACGCGACGGAAGAGAGCAGTTTTTTGAATCTCATGTTGCTCGAGGAACTTGTCAAGAGTTTCCGTATCAATATGATATCC</canonical_amplicon>
		<polymorphic_amplicon>GTTGTCCACGAATTATCATCTTCTTGGCATCAACTGTGAAAGGTTGGTGGTGTTTTATTATTGGATAGAWGTTAATGATGTCGTCTTCAGTGAAAGCAGCAACTTTTTTCGCCGAGGAATCGAGTTGATAATCTCTGGCAACGATTTGAACTCCCATAATCTTGACAACGCGACGGAAGAGAGCAGTTTTTTGAATCTCATGTTGCTCGAGGAACTTGTCAAGAGTTTCCGTATCAATATGATATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30580</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>181562</contig_pos>
        <strand></strand>
        <context>AAAGCATCAG[G/T]AGGAACATGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATTATTTTTCCACCTGGCTTCTTTTTTCTGGGAGATTTGAAAGCATCAG</left_flank>
        <right_flank>AGGAACATGTCGTAAACGGTTACAAGGTTCTGTTCTTCTGATGTAGAAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGAGTAATCCTTGTTGCTTATAAGGTTCAAAAAAGGCATCAACATTTTCATCTGTTTCTCCAACTAGTTGATCGAAAAATGTGATGTATTCTTTTTGAAATCGAGGACTCAACTTCAACAATTCATCCACAACTTGACACTTATCACATAGAATTAGAGGAAGGACAAGTTCTTCAAATGAAAACTTGTCAACTAAATCGTATCGCATAATCAGATCAGCAGCTTCTTTGAATTGGCGCGTCTCGAAATATTCTTGAATCACTTCGTCTCTTCTCTCTAGTACCAGGTCTTCCGAAAATCCAAAAATCGTGGAGAAAGGTTTCAATAGACTGATATCGCGAACGACATATTTAGTAGCATTGCTGACAGTTTCTTCTGTTAATTGATTTTTTAGTTTTTCTCTATTTTCCTTTTCCCACTTCTCGAAATCGTTGAGAAACCATTGAACCATTATTTTTCCACCTGGCTTCTTTTTTCTGGGAGATTTGAAAGCATCAGGAGGAACATGTCGTAAACGGTTACAAGGTTCTGTTCTTCTGATGTAGAAAATTTTAAGTCTTCCTCAAAAATTTCAATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACA</canonical>
            <polymorphic>GTGAGTAATCCTTGTTGCTTATAAGGTTCAAAAAAGGCATCAACATTTTCATCTGTTTCTCCAACTAGTTGATCGAAAAATGTGATGTATTCTTTTTGAAATCGAGGACTCAACTTCAACAATTCATCCACAACTTGACACTTATCACATAGAATTAGAGGAAGGACAAGTTCTTCAAATGAAAACTTGTCAACTAAATCGTATCGCATAATCAGATCAGCAGCTTCTTTGAATTGGCGCGTCTCGAAATATTCTTGAATCACTTCGTCTCTTCTCTCTAGTACCAGGTCTTCCGAAAATCCAAAAATCGTGGAGAAAGGTTTCAATAGACTGATATCGCGAACGACATATTTAGTAGCATTGCTGACAGTTTCTTCTGTTAATTGATTTTTTAGTTTTTCTCTATTTTCCTTTTCCCACTTCTCGAAATCGTTGAGAAACCATTGAACCATTATTTTTCCACCTGGCTTCTTTTTTCTGGGAGATTTGAAAGCATCAGKAGGAACATGTCGTAAACGGTTACAAGGTTCTGTTCTTCTGATGTAGAAAATTTTAAGTCTTCCTCAAAAATTTCAATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>243 138 121 118 104 85 84 74 22 11</canonical_bands>
                <polymorphic_bands>243 178 138 121 118 85 84 22 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAACCATTGAACCATTATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATTGTCTTTTCTCTGATTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>AGAAACCATTGAACCATTATTTTTCCACCTGGCTTCTTTTTTCTGGGAGATTTGAAAGCATCAGGAGGAACATGTCGTAAACGGTTACAAGGTTCTGTTCTTCTGATGTAGAAAATTTTAAGTCTTCCTCAAAAATTTCAATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATT</canonical_amplicon>
		<polymorphic_amplicon>AGAAACCATTGAACCATTATTTTTCCACCTGGCTTCTTTTTTCTGGGAGATTTGAAAGCATCAGKAGGAACATGTCGTAAACGGTTACAAGGTTCTGTTCTTCTGATGTAGAAAATTTTAAGTCTTCCTCAAAAATTTCAATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30581</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>181696</contig_pos>
        <strand>+</strand>
        <context>ATGAATTGCT[A/G]AAWTTAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCT</left_flank>
        <right_flank>AATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGACACTTATCACATAGAATTAGAGGAAGGACAAGTTCTTCAAATGAAAACTTGTCAACTAAATCGTATCGCATAATCAGATCAGCAGCTTCTTTGAATTGGCGCGTCTCGAAATATTCTTGAATCACTTCGTCTCTTCTCTCTAGTACCAGGTCTTCCGAAAATCCAAAAATCGTGGAGAAAGGTTTCAATAGACTGATATCGCGAACGACATATTTAGTAGCATTGCTGACAGTTTCTTCTGTTAATTGATTTTTTAGTTTTTCTCTATTTTCCTTTTCCCACTTCTCGAAATCGTTGAGAAACCATTGAACCATTATTTTTCCACCTGGCTTCTTTTTTCTGGGAGATTTGAAAGCATCAGGAGGAACATGTCGTAAACGGTTACAAGGTTCTGTTCTTCTGATGTAGAAAATTTTAAGTCTTCCTCAAAAATTTCAATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATTATTTAGCAGGCATCGCGGACCAAGTTAAAATTTTTCATAAAAGCAAGAAAAAAATTTTCAAAATTAGGTGCATTCATAGAAAAATCCATAAA</canonical>
            <polymorphic>TTGACACTTATCACATAGAATTAGAGGAAGGACAAGTTCTTCAAATGAAAACTTGTCAACTAAATCGTATCGCATAATCAGATCAGCAGCTTCTTTGAATTGGCGCGTCTCGAAATATTCTTGAATCACTTCGTCTCTTCTCTCTAGTACCAGGTCTTCCGAAAATCCAAAAATCGTGGAGAAAGGTTTCAATAGACTGATATCGCGAACGACATATTTAGTAGCATTGCTGACAGTTTCTTCTGTTAATTGATTTTTTAGTTTTTCTCTATTTTCCTTTTCCCACTTCTCGAAATCGTTGAGAAACCATTGAACCATTATTTTTCCACCTGGCTTCTTTTTTCTGGGAGATTTGAAAGCATCAGGAGGAACATGTCGTAAACGGTTACAAGGTTCTGTTCTTCTGATGTAGAAAATTTTAAGTCTTCCTCAAAAATTTCAATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTRAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATTATTTAGCAGGCATCGCGGACCAAGTTAAAATTTTTCATAAAAGCAAGAAAAAAATTTTCAAAATTAGGTGCATTCATAGAAAAATCCATAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>414 232 204 66 40 24 20</canonical_bands>
                <polymorphic_bands>414 270 232 40 24 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGATTTTGGAATGGATTTT</pcr_primer_p1>
		<pcr_primer_p2>TCTCGTTTTCCAAATAAAAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGA</canonical_amplicon>
		<polymorphic_amplicon>AATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTRAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30582</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>181699</contig_pos>
        <strand>+</strand>
        <context>AATTGCTRAA[A/T]TTAAAATAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAA</left_flank>
        <right_flank>TTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACTTATCACATAGAATTAGAGGAAGGACAAGTTCTTCAAATGAAAACTTGTCAACTAAATCGTATCGCATAATCAGATCAGCAGCTTCTTTGAATTGGCGCGTCTCGAAATATTCTTGAATCACTTCGTCTCTTCTCTCTAGTACCAGGTCTTCCGAAAATCCAAAAATCGTGGAGAAAGGTTTCAATAGACTGATATCGCGAACGACATATTTAGTAGCATTGCTGACAGTTTCTTCTGTTAATTGATTTTTTAGTTTTTCTCTATTTTCCTTTTCCCACTTCTCGAAATCGTTGAGAAACCATTGAACCATTATTTTTCCACCTGGCTTCTTTTTTCTGGGAGATTTGAAAGCATCAGGAGGAACATGTCGTAAACGGTTACAAGGTTCTGTTCTTCTGATGTAGAAAATTTTAAGTCTTCCTCAAAAATTTCAATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATTATTTAGCAGGCATCGCGGACCAAGTTAAAATTTTTCATAAAAGCAAGAAAAAAATTTTCAAAATTAGGTGCATTCATAGAAAAATCCATAAATAA</canonical>
            <polymorphic>ACACTTATCACATAGAATTAGAGGAAGGACAAGTTCTTCAAATGAAAACTTGTCAACTAAATCGTATCGCATAATCAGATCAGCAGCTTCTTTGAATTGGCGCGTCTCGAAATATTCTTGAATCACTTCGTCTCTTCTCTCTAGTACCAGGTCTTCCGAAAATCCAAAAATCGTGGAGAAAGGTTTCAATAGACTGATATCGCGAACGACATATTTAGTAGCATTGCTGACAGTTTCTTCTGTTAATTGATTTTTTAGTTTTTCTCTATTTTCCTTTTCCCACTTCTCGAAATCGTTGAGAAACCATTGAACCATTATTTTTCCACCTGGCTTCTTTTTTCTGGGAGATTTGAAAGCATCAGGAGGAACATGTCGTAAACGGTTACAAGGTTCTGTTCTTCTGATGTAGAAAATTTTAAGTCTTCCTCAAAAATTTCAATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAAWTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATTATTTAGCAGGCATCGCGGACCAAGTTAAAATTTTTCATAAAAGCAAGAAAAAAATTTTCAAAATTAGGTGCATTCATAGAAAAATCCATAAATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>411 232 204 66 43 24 20</canonical_bands>
                <polymorphic_bands>411 270 232 43 24 20</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>167 161 150 91 79 58 41 39 38 34 34 32 24 20 15 9 8</canonical_bands>
                <polymorphic_bands>167 161 150 91 79 58 46 41 39 34 34 32 24 20 15 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGATTTTGGAATGGATTTT</pcr_primer_p1>
		<pcr_primer_p2>TCTCGTTTTCCAAATAAAAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGA</canonical_amplicon>
		<polymorphic_amplicon>AATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAAWTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30583</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>181757</contig_pos>
        <strand>+</strand>
        <context>AACTTTCGAC[C/G]TATCGTTATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGAC</left_flank>
        <right_flank>TATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCGTATCGCATAATCAGATCAGCAGCTTCTTTGAATTGGCGCGTCTCGAAATATTCTTGAATCACTTCGTCTCTTCTCTCTAGTACCAGGTCTTCCGAAAATCCAAAAATCGTGGAGAAAGGTTTCAATAGACTGATATCGCGAACGACATATTTAGTAGCATTGCTGACAGTTTCTTCTGTTAATTGATTTTTTAGTTTTTCTCTATTTTCCTTTTCCCACTTCTCGAAATCGTTGAGAAACCATTGAACCATTATTTTTCCACCTGGCTTCTTTTTTCTGGGAGATTTGAAAGCATCAGGAGGAACATGTCGTAAACGGTTACAAGGTTCTGTTCTTCTGATGTAGAAAATTTTAAGTCTTCCTCAAAAATTTCAATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATTATTTAGCAGGCATCGCGGACCAAGTTAAAATTTTTCATAAAAGCAAGAAAAAAATTTTCAAAATTAGGTGCATTCATAGAAAAATCCATAAATAAAAATACAAATCAACAAGAAAAACTAGGTTATTGCTCATTTTTCAGCATTTCGTAGATC</canonical>
            <polymorphic>AAATCGTATCGCATAATCAGATCAGCAGCTTCTTTGAATTGGCGCGTCTCGAAATATTCTTGAATCACTTCGTCTCTTCTCTCTAGTACCAGGTCTTCCGAAAATCCAAAAATCGTGGAGAAAGGTTTCAATAGACTGATATCGCGAACGACATATTTAGTAGCATTGCTGACAGTTTCTTCTGTTAATTGATTTTTTAGTTTTTCTCTATTTTCCTTTTCCCACTTCTCGAAATCGTTGAGAAACCATTGAACCATTATTTTTCCACCTGGCTTCTTTTTTCTGGGAGATTTGAAAGCATCAGGAGGAACATGTCGTAAACGGTTACAAGGTTCTGTTCTTCTGATGTAGAAAATTTTAAGTCTTCCTCAAAAATTTCAATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACSTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATTATTTAGCAGGCATCGCGGACCAAGTTAAAATTTTTCATAAAAGCAAGAAAAAAATTTTCAAAATTAGGTGCATTCATAGAAAAATCCATAAATAAAAATACAAATCAACAAGAAAAACTAGGTTATTGCTCATTTTTCAGCATTTCGTAGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGATTTTGGAATGGATTTT</pcr_primer_p1>
		<pcr_primer_p2>TCTCGTTTTCCAAATAAAAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGA</canonical_amplicon>
		<polymorphic_amplicon>AATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACSTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30584</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>181792</contig_pos>
        <strand>+</strand>
        <context>ATCCGCTCGT[A/C]TGTTGACTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGT</left_flank>
        <right_flank>TGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTGGCGCGTCTCGAAATATTCTTGAATCACTTCGTCTCTTCTCTCTAGTACCAGGTCTTCCGAAAATCCAAAAATCGTGGAGAAAGGTTTCAATAGACTGATATCGCGAACGACATATTTAGTAGCATTGCTGACAGTTTCTTCTGTTAATTGATTTTTTAGTTTTTCTCTATTTTCCTTTTCCCACTTCTCGAAATCGTTGAGAAACCATTGAACCATTATTTTTCCACCTGGCTTCTTTTTTCTGGGAGATTTGAAAGCATCAGGAGGAACATGTCGTAAACGGTTACAAGGTTCTGTTCTTCTGATGTAGAAAATTTTAAGTCTTCCTCAAAAATTTCAATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATTATTTAGCAGGCATCGCGGACCAAGTTAAAATTTTTCATAAAAGCAAGAAAAAAATTTTCAAAATTAGGTGCATTCATAGAAAAATCCATAAATAAAAATACAAATCAACAAGAAAAACTAGGTTATTGCTCATTTTTCAGCATTTCGTAGATCTTCTCAGATTGGGGTTTGAAGTGGAAGTACATGGT</canonical>
            <polymorphic>GAATTGGCGCGTCTCGAAATATTCTTGAATCACTTCGTCTCTTCTCTCTAGTACCAGGTCTTCCGAAAATCCAAAAATCGTGGAGAAAGGTTTCAATAGACTGATATCGCGAACGACATATTTAGTAGCATTGCTGACAGTTTCTTCTGTTAATTGATTTTTTAGTTTTTCTCTATTTTCCTTTTCCCACTTCTCGAAATCGTTGAGAAACCATTGAACCATTATTTTTCCACCTGGCTTCTTTTTTCTGGGAGATTTGAAAGCATCAGGAGGAACATGTCGTAAACGGTTACAAGGTTCTGTTCTTCTGATGTAGAAAATTTTAAGTCTTCCTCAAAAATTTCAATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTMTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATTATTTAGCAGGCATCGCGGACCAAGTTAAAATTTTTCATAAAAGCAAGAAAAAAATTTTCAAAATTAGGTGCATTCATAGAAAAATCCATAAATAAAAATACAAATCAACAAGAAAAACTAGGTTATTGCTCATTTTTCAGCATTTCGTAGATCTTCTCAGATTGGGGTTTGAAGTGGAAGTACATGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGATTTTGGAATGGATTTT</pcr_primer_p1>
		<pcr_primer_p2>TCTCGTTTTCCAAATAAAAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGA</canonical_amplicon>
		<polymorphic_amplicon>AATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTMTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30585</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>181816</contig_pos>
        <strand>+</strand>
        <context>GACTGCTCTC[A/G]TTTGACTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTC</left_flank>
        <right_flank>TTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAATCACTTCGTCTCTTCTCTCTAGTACCAGGTCTTCCGAAAATCCAAAAATCGTGGAGAAAGGTTTCAATAGACTGATATCGCGAACGACATATTTAGTAGCATTGCTGACAGTTTCTTCTGTTAATTGATTTTTTAGTTTTTCTCTATTTTCCTTTTCCCACTTCTCGAAATCGTTGAGAAACCATTGAACCATTATTTTTCCACCTGGCTTCTTTTTTCTGGGAGATTTGAAAGCATCAGGAGGAACATGTCGTAAACGGTTACAAGGTTCTGTTCTTCTGATGTAGAAAATTTTAAGTCTTCCTCAAAAATTTCAATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATTATTTAGCAGGCATCGCGGACCAAGTTAAAATTTTTCATAAAAGCAAGAAAAAAATTTTCAAAATTAGGTGCATTCATAGAAAAATCCATAAATAAAAATACAAATCAACAAGAAAAACTAGGTTATTGCTCATTTTTCAGCATTTCGTAGATCTTCTCAGATTGGGGTTTGAAGTGGAAGTACATGGTGAGACGATCGCTGGCGGCGACTTC</canonical>
            <polymorphic>TTGAATCACTTCGTCTCTTCTCTCTAGTACCAGGTCTTCCGAAAATCCAAAAATCGTGGAGAAAGGTTTCAATAGACTGATATCGCGAACGACATATTTAGTAGCATTGCTGACAGTTTCTTCTGTTAATTGATTTTTTAGTTTTTCTCTATTTTCCTTTTCCCACTTCTCGAAATCGTTGAGAAACCATTGAACCATTATTTTTCCACCTGGCTTCTTTTTTCTGGGAGATTTGAAAGCATCAGGAGGAACATGTCGTAAACGGTTACAAGGTTCTGTTCTTCTGATGTAGAAAATTTTAAGTCTTCCTCAAAAATTTCAATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCRTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATTATTTAGCAGGCATCGCGGACCAAGTTAAAATTTTTCATAAAAGCAAGAAAAAAATTTTCAAAATTAGGTGCATTCATAGAAAAATCCATAAATAAAAATACAAATCAACAAGAAAAACTAGGTTATTGCTCATTTTTCAGCATTTCGTAGATCTTCTCAGATTGGGGTTTGAAGTGGAAGTACATGGTGAGACGATCGCTGGCGGCGACTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGATTTTGGAATGGATTTT</pcr_primer_p1>
		<pcr_primer_p2>TCTCGTTTTCCAAATAAAAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGA</canonical_amplicon>
		<polymorphic_amplicon>AATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCRTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30586</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>181924</contig_pos>
        <strand>+</strand>
        <context>GTTTTCTTTT[C/T]STGAGAAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTT</left_flank>
        <right_flank>CTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTGACAGTTTCTTCTGTTAATTGATTTTTTAGTTTTTCTCTATTTTCCTTTTCCCACTTCTCGAAATCGTTGAGAAACCATTGAACCATTATTTTTCCACCTGGCTTCTTTTTTCTGGGAGATTTGAAAGCATCAGGAGGAACATGTCGTAAACGGTTACAAGGTTCTGTTCTTCTGATGTAGAAAATTTTAAGTCTTCCTCAAAAATTTCAATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATTATTTAGCAGGCATCGCGGACCAAGTTAAAATTTTTCATAAAAGCAAGAAAAAAATTTTCAAAATTAGGTGCATTCATAGAAAAATCCATAAATAAAAATACAAATCAACAAGAAAAACTAGGTTATTGCTCATTTTTCAGCATTTCGTAGATCTTCTCAGATTGGGGTTTGAAGTGGAAGTACATGGTGAGACGATCGCTGGCGGCGACTTCTAGGTCATGCCCATTGTCATGCTTGGCCTGTAAAAAATTAAATTTCAAATACTTTATCTAAATATAATACAAACCAAGAATCCTCTGAGCGACCAGACCGCCCAGAAA</canonical>
            <polymorphic>GCTGACAGTTTCTTCTGTTAATTGATTTTTTAGTTTTTCTCTATTTTCCTTTTCCCACTTCTCGAAATCGTTGAGAAACCATTGAACCATTATTTTTCCACCTGGCTTCTTTTTTCTGGGAGATTTGAAAGCATCAGGAGGAACATGTCGTAAACGGTTACAAGGTTCTGTTCTTCTGATGTAGAAAATTTTAAGTCTTCCTCAAAAATTTCAATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTYCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATTATTTAGCAGGCATCGCGGACCAAGTTAAAATTTTTCATAAAAGCAAGAAAAAAATTTTCAAAATTAGGTGCATTCATAGAAAAATCCATAAATAAAAATACAAATCAACAAGAAAAACTAGGTTATTGCTCATTTTTCAGCATTTCGTAGATCTTCTCAGATTGGGGTTTGAAGTGGAAGTACATGGTGAGACGATCGCTGGCGGCGACTTCTAGGTCATGCCCATTGTCATGCTTGGCCTGTAAAAAATTAAATTTCAAATACTTTATCTAAATATAATACAAACCAAGAATCCTCTGAGCGACCAGACCGCCCAGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>500 121 118 104 74 61 22</canonical_bands>
                <polymorphic_bands>621 118 104 74 61 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAAAATTACTTTTATTTGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATTTTTGTTTTTAGGCTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATT</canonical_amplicon>
		<polymorphic_amplicon>CTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTYCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30587</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>181925</contig_pos>
        <strand>+</strand>
        <context>TTTTCTTTTY[C/G]TGAGAAGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTC</left_flank>
        <right_flank>TGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGACAGTTTCTTCTGTTAATTGATTTTTTAGTTTTTCTCTATTTTCCTTTTCCCACTTCTCGAAATCGTTGAGAAACCATTGAACCATTATTTTTCCACCTGGCTTCTTTTTTCTGGGAGATTTGAAAGCATCAGGAGGAACATGTCGTAAACGGTTACAAGGTTCTGTTCTTCTGATGTAGAAAATTTTAAGTCTTCCTCAAAAATTTCAATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATTATTTAGCAGGCATCGCGGACCAAGTTAAAATTTTTCATAAAAGCAAGAAAAAAATTTTCAAAATTAGGTGCATTCATAGAAAAATCCATAAATAAAAATACAAATCAACAAGAAAAACTAGGTTATTGCTCATTTTTCAGCATTTCGTAGATCTTCTCAGATTGGGGTTTGAAGTGGAAGTACATGGTGAGACGATCGCTGGCGGCGACTTCTAGGTCATGCCCATTGTCATGCTTGGCCTGTAAAAAATTAAATTTCAAATACTTTATCTAAATATAATACAAACCAAGAATCCTCTGAGCGACCAGACCGCCCAGAAAA</canonical>
            <polymorphic>CTGACAGTTTCTTCTGTTAATTGATTTTTTAGTTTTTCTCTATTTTCCTTTTCCCACTTCTCGAAATCGTTGAGAAACCATTGAACCATTATTTTTCCACCTGGCTTCTTTTTTCTGGGAGATTTGAAAGCATCAGGAGGAACATGTCGTAAACGGTTACAAGGTTCTGTTCTTCTGATGTAGAAAATTTTAAGTCTTCCTCAAAAATTTCAATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCSTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATTATTTAGCAGGCATCGCGGACCAAGTTAAAATTTTTCATAAAAGCAAGAAAAAAATTTTCAAAATTAGGTGCATTCATAGAAAAATCCATAAATAAAAATACAAATCAACAAGAAAAACTAGGTTATTGCTCATTTTTCAGCATTTCGTAGATCTTCTCAGATTGGGGTTTGAAGTGGAAGTACATGGTGAGACGATCGCTGGCGGCGACTTCTAGGTCATGCCCATTGTCATGCTTGGCCTGTAAAAAATTAAATTTCAAATACTTTATCTAAATATAATACAAACCAAGAATCCTCTGAGCGACCAGACCGCCCAGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 335 141 24</canonical_bands>
                <polymorphic_bands>835 141 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAAAATTACTTTTATTTGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATTTTTGTTTTTAGGCTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATT</canonical_amplicon>
		<polymorphic_amplicon>CTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCSTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30588</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>181982</contig_pos>
        <strand>+</strand>
        <context>AGAAAAGAAC[A/T]CAACATATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAAC</left_flank>
        <right_flank>CAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTCGAAATCGTTGAGAAACCATTGAACCATTATTTTTCCACCTGGCTTCTTTTTTCTGGGAGATTTGAAAGCATCAGGAGGAACATGTCGTAAACGGTTACAAGGTTCTGTTCTTCTGATGTAGAAAATTTTAAGTCTTCCTCAAAAATTTCAATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATTATTTAGCAGGCATCGCGGACCAAGTTAAAATTTTTCATAAAAGCAAGAAAAAAATTTTCAAAATTAGGTGCATTCATAGAAAAATCCATAAATAAAAATACAAATCAACAAGAAAAACTAGGTTATTGCTCATTTTTCAGCATTTCGTAGATCTTCTCAGATTGGGGTTTGAAGTGGAAGTACATGGTGAGACGATCGCTGGCGGCGACTTCTAGGTCATGCCCATTGTCATGCTTGGCCTGTAAAAAATTAAATTTCAAATACTTTATCTAAATATAATACAAACCAAGAATCCTCTGAGCGACCAGACCGCCCAGAAAAGATTTGCGAGAGGAATAAAGAATTTGATTTCCATCATCAAACGAGACACTTCTGCGG</canonical>
            <polymorphic>TTCTCGAAATCGTTGAGAAACCATTGAACCATTATTTTTCCACCTGGCTTCTTTTTTCTGGGAGATTTGAAAGCATCAGGAGGAACATGTCGTAAACGGTTACAAGGTTCTGTTCTTCTGATGTAGAAAATTTTAAGTCTTCCTCAAAAATTTCAATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACWCAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATTATTTAGCAGGCATCGCGGACCAAGTTAAAATTTTTCATAAAAGCAAGAAAAAAATTTTCAAAATTAGGTGCATTCATAGAAAAATCCATAAATAAAAATACAAATCAACAAGAAAAACTAGGTTATTGCTCATTTTTCAGCATTTCGTAGATCTTCTCAGATTGGGGTTTGAAGTGGAAGTACATGGTGAGACGATCGCTGGCGGCGACTTCTAGGTCATGCCCATTGTCATGCTTGGCCTGTAAAAAATTAAATTTCAAATACTTTATCTAAATATAATACAAACCAAGAATCCTCTGAGCGACCAGACCGCCCAGAAAAGATTTGCGAGAGGAATAAAGAATTTGATTTCCATCATCAAACGAGACACTTCTGCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>458 180 140 106 52 42 13 9</canonical_bands>
                <polymorphic_bands>510 180 140 106 42 13 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAAAATTACTTTTATTTGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATTTTTGTTTTTAGGCTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATT</canonical_amplicon>
		<polymorphic_amplicon>CTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACWCAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30589</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>182017</contig_pos>
        <strand>+</strand>
        <context>CTCTGTCTCT[A/C]WGCGTCTCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCT</left_flank>
        <right_flank>TGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCCACCTGGCTTCTTTTTTCTGGGAGATTTGAAAGCATCAGGAGGAACATGTCGTAAACGGTTACAAGGTTCTGTTCTTCTGATGTAGAAAATTTTAAGTCTTCCTCAAAAATTTCAATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATTATTTAGCAGGCATCGCGGACCAAGTTAAAATTTTTCATAAAAGCAAGAAAAAAATTTTCAAAATTAGGTGCATTCATAGAAAAATCCATAAATAAAAATACAAATCAACAAGAAAAACTAGGTTATTGCTCATTTTTCAGCATTTCGTAGATCTTCTCAGATTGGGGTTTGAAGTGGAAGTACATGGTGAGACGATCGCTGGCGGCGACTTCTAGGTCATGCCCATTGTCATGCTTGGCCTGTAAAAAATTAAATTTCAAATACTTTATCTAAATATAATACAAACCAAGAATCCTCTGAGCGACCAGACCGCCCAGAAAAGATTTGCGAGAGGAATAAAGAATTTGATTTCCATCATCAAACGAGACACTTCTGCGGATCGATCTTCAGACAGTGGGAACTTTCGATCTGGG</canonical>
            <polymorphic>TTTTCCACCTGGCTTCTTTTTTCTGGGAGATTTGAAAGCATCAGGAGGAACATGTCGTAAACGGTTACAAGGTTCTGTTCTTCTGATGTAGAAAATTTTAAGTCTTCCTCAAAAATTTCAATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTMTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATTATTTAGCAGGCATCGCGGACCAAGTTAAAATTTTTCATAAAAGCAAGAAAAAAATTTTCAAAATTAGGTGCATTCATAGAAAAATCCATAAATAAAAATACAAATCAACAAGAAAAACTAGGTTATTGCTCATTTTTCAGCATTTCGTAGATCTTCTCAGATTGGGGTTTGAAGTGGAAGTACATGGTGAGACGATCGCTGGCGGCGACTTCTAGGTCATGCCCATTGTCATGCTTGGCCTGTAAAAAATTAAATTTCAAATACTTTATCTAAATATAATACAAACCAAGAATCCTCTGAGCGACCAGACCGCCCAGAAAAGATTTGCGAGAGGAATAAAGAATTTGATTTCCATCATCAAACGAGACACTTCTGCGGATCGATCTTCAGACAGTGGGAACTTTCGATCTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAAAATTACTTTTATTTGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATTTTTGTTTTTAGGCTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATT</canonical_amplicon>
		<polymorphic_amplicon>CTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTMTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30590</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>182018</contig_pos>
        <strand>+</strand>
        <context>TCTGTCTCTM[A/T]GCGTCTCTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTC</left_flank>
        <right_flank>GCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCACCTGGCTTCTTTTTTCTGGGAGATTTGAAAGCATCAGGAGGAACATGTCGTAAACGGTTACAAGGTTCTGTTCTTCTGATGTAGAAAATTTTAAGTCTTCCTCAAAAATTTCAATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATTATTTAGCAGGCATCGCGGACCAAGTTAAAATTTTTCATAAAAGCAAGAAAAAAATTTTCAAAATTAGGTGCATTCATAGAAAAATCCATAAATAAAAATACAAATCAACAAGAAAAACTAGGTTATTGCTCATTTTTCAGCATTTCGTAGATCTTCTCAGATTGGGGTTTGAAGTGGAAGTACATGGTGAGACGATCGCTGGCGGCGACTTCTAGGTCATGCCCATTGTCATGCTTGGCCTGTAAAAAATTAAATTTCAAATACTTTATCTAAATATAATACAAACCAAGAATCCTCTGAGCGACCAGACCGCCCAGAAAAGATTTGCGAGAGGAATAAAGAATTTGATTTCCATCATCAAACGAGACACTTCTGCGGATCGATCTTCAGACAGTGGGAACTTTCGATCTGGGT</canonical>
            <polymorphic>TTTCCACCTGGCTTCTTTTTTCTGGGAGATTTGAAAGCATCAGGAGGAACATGTCGTAAACGGTTACAAGGTTCTGTTCTTCTGATGTAGAAAATTTTAAGTCTTCCTCAAAAATTTCAATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCWGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATTATTTAGCAGGCATCGCGGACCAAGTTAAAATTTTTCATAAAAGCAAGAAAAAAATTTTCAAAATTAGGTGCATTCATAGAAAAATCCATAAATAAAAATACAAATCAACAAGAAAAACTAGGTTATTGCTCATTTTTCAGCATTTCGTAGATCTTCTCAGATTGGGGTTTGAAGTGGAAGTACATGGTGAGACGATCGCTGGCGGCGACTTCTAGGTCATGCCCATTGTCATGCTTGGCCTGTAAAAAATTAAATTTCAAATACTTTATCTAAATATAATACAAACCAAGAATCCTCTGAGCGACCAGACCGCCCAGAAAAGATTTGCGAGAGGAATAAAGAATTTGATTTCCATCATCAAACGAGACACTTCTGCGGATCGATCTTCAGACAGTGGGAACTTTCGATCTGGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAAAATTACTTTTATTTGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATTTTTGTTTTTAGGCTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATT</canonical_amplicon>
		<polymorphic_amplicon>CTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCWGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30591</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>182031</contig_pos>
        <strand>+</strand>
        <context>GTCTCTTTTC[A/T]GTGTTTACTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTC</left_flank>
        <right_flank>GTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTTTTTCTGGGAGATTTGAAAGCATCAGGAGGAACATGTCGTAAACGGTTACAAGGTTCTGTTCTTCTGATGTAGAAAATTTTAAGTCTTCCTCAAAAATTTCAATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATTATTTAGCAGGCATCGCGGACCAAGTTAAAATTTTTCATAAAAGCAAGAAAAAAATTTTCAAAATTAGGTGCATTCATAGAAAAATCCATAAATAAAAATACAAATCAACAAGAAAAACTAGGTTATTGCTCATTTTTCAGCATTTCGTAGATCTTCTCAGATTGGGGTTTGAAGTGGAAGTACATGGTGAGACGATCGCTGGCGGCGACTTCTAGGTCATGCCCATTGTCATGCTTGGCCTGTAAAAAATTAAATTTCAAATACTTTATCTAAATATAATACAAACCAAGAATCCTCTGAGCGACCAGACCGCCCAGAAAAGATTTGCGAGAGGAATAAAGAATTTGATTTCCATCATCAAACGAGACACTTCTGCGGATCGATCTTCAGACAGTGGGAACTTTCGATCTGGGTTCTGCTCCTTCAT</canonical>
            <polymorphic>TCTTTTTTCTGGGAGATTTGAAAGCATCAGGAGGAACATGTCGTAAACGGTTACAAGGTTCTGTTCTTCTGATGTAGAAAATTTTAAGTCTTCCTCAAAAATTTCAATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCWGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATTATTTAGCAGGCATCGCGGACCAAGTTAAAATTTTTCATAAAAGCAAGAAAAAAATTTTCAAAATTAGGTGCATTCATAGAAAAATCCATAAATAAAAATACAAATCAACAAGAAAAACTAGGTTATTGCTCATTTTTCAGCATTTCGTAGATCTTCTCAGATTGGGGTTTGAAGTGGAAGTACATGGTGAGACGATCGCTGGCGGCGACTTCTAGGTCATGCCCATTGTCATGCTTGGCCTGTAAAAAATTAAATTTCAAATACTTTATCTAAATATAATACAAACCAAGAATCCTCTGAGCGACCAGACCGCCCAGAAAAGATTTGCGAGAGGAATAAAGAATTTGATTTCCATCATCAAACGAGACACTTCTGCGGATCGATCTTCAGACAGTGGGAACTTTCGATCTGGGTTCTGCTCCTTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAAAATTACTTTTATTTGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATTTTTGTTTTTAGGCTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATT</canonical_amplicon>
		<polymorphic_amplicon>CTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCWGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30592</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>182042</contig_pos>
        <strand>+</strand>
        <context>GTGTTTACTT[A/C]TGCCTTGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTT</left_flank>
        <right_flank>TGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGATTTGAAAGCATCAGGAGGAACATGTCGTAAACGGTTACAAGGTTCTGTTCTTCTGATGTAGAAAATTTTAAGTCTTCCTCAAAAATTTCAATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATTATTTAGCAGGCATCGCGGACCAAGTTAAAATTTTTCATAAAAGCAAGAAAAAAATTTTCAAAATTAGGTGCATTCATAGAAAAATCCATAAATAAAAATACAAATCAACAAGAAAAACTAGGTTATTGCTCATTTTTCAGCATTTCGTAGATCTTCTCAGATTGGGGTTTGAAGTGGAAGTACATGGTGAGACGATCGCTGGCGGCGACTTCTAGGTCATGCCCATTGTCATGCTTGGCCTGTAAAAAATTAAATTTCAAATACTTTATCTAAATATAATACAAACCAAGAATCCTCTGAGCGACCAGACCGCCCAGAAAAGATTTGCGAGAGGAATAAAGAATTTGATTTCCATCATCAAACGAGACACTTCTGCGGATCGATCTTCAGACAGTGGGAACTTTCGATCTGGGTTCTGCTCCTTCATCTATAAAGGAA</canonical>
            <polymorphic>GGAGATTTGAAAGCATCAGGAGGAACATGTCGTAAACGGTTACAAGGTTCTGTTCTTCTGATGTAGAAAATTTTAAGTCTTCCTCAAAAATTTCAATGATTTTGGAATGGATTTTTTCTTCTCGATCAGGGTCTTCGGATTTCATGAATTGCTGAATTTAAAATAGGGAAATGTTGAAATCAGAGAAAAGACAATTACTTTAAGAACTTTCGACCTATCGTTATATAATTTATATTTCCATCCGCTCGTCTGTTGACTTTCCTGACTGCTCTCGTTTGACTTTGATGTTTCTGCCGAGAGGTCAGAAGACATCTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTMTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATTATTTAGCAGGCATCGCGGACCAAGTTAAAATTTTTCATAAAAGCAAGAAAAAAATTTTCAAAATTAGGTGCATTCATAGAAAAATCCATAAATAAAAATACAAATCAACAAGAAAAACTAGGTTATTGCTCATTTTTCAGCATTTCGTAGATCTTCTCAGATTGGGGTTTGAAGTGGAAGTACATGGTGAGACGATCGCTGGCGGCGACTTCTAGGTCATGCCCATTGTCATGCTTGGCCTGTAAAAAATTAAATTTCAAATACTTTATCTAAATATAATACAAACCAAGAATCCTCTGAGCGACCAGACCGCCCAGAAAAGATTTGCGAGAGGAATAAAGAATTTGATTTCCATCATCAAACGAGACACTTCTGCGGATCGATCTTCAGACAGTGGGAACTTTCGATCTGGGTTCTGCTCCTTCATCTATAAAGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAAAATTACTTTTATTTGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATTTTTGTTTTTAGGCTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTCTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATT</canonical_amplicon>
		<polymorphic_amplicon>CTGAAAATTACTTTTATTTGGAAAACGAGACAAATAAACGGGAAAAAATTTGAGGATAGGTTTTCTTTTCCTGAGAAGAAACCGAAAAATGGGAGAAAGGGAAGATGAAAAAGGACAAGAAAAGAACACAACATATTGCATTTCCCGCTTTTCTCTGTCTCTCTGCGTCTCTTTTCAGTGTTTACTTMTGCCTTGAAAACTGACAACAATTTGAATAGGAAAATAGAAAAGAAGCCTAAAAACAAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30593</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>185951</contig_pos>
        <strand>+</strand>
        <context>GTCTATTTTC[C/T]CAATATTATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGACCAAAAATTTTTATTGCATTAAAATGTTCGAAAAGTTGTCTATTTTC</left_flank>
        <right_flank>CAATATTATAGCGAAAAAATTCGAAAAAAGTCCTAAATCTCCGAAAAATG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTTCCAAGTCATTCCGCATATCGAATCCAATTAGTTTAAGCTTTGGAGTCTCAAAAAGTCCTTTCGCAAATCTCTCCCATAACAGATCCGGCACTTTTTCTTTCTCCAGCTCCACGCAGTCCACTAGGAGAACCTTGTCCTTGAAGAAAAGTTGGATAATAGCAATTTTTGAAGAACTGAAATTTTGAATTTTTAAATAAAGTGAAATCGGATATATACTTGGCAGTGATCAAGTTTGATGGTTTCCATTCTGAATCGAATCCGACATAAACTGATTTTTCTGGCTCTCGACTTAAGGATTCAATTTCTTCGCAAATACTCTGCATTTCTGATTCGGTTTTAATCATATAAATGGGACATTTATCATCCTCGAAGACATACATCTGTTCACCTTCCTCGGGAGCGCATACCGTTCTGGAATAGGTTATTGAAGTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTTCGAAAAGTTGTCTATTTTCCCAATATTATAGCGAAAAAATTCGAAAAAAGTCCTAAATCTCCGAAAAATGGCGTTAAAAGCGAAAAAATTCAAAAAAAAAGTTGCTAGGAGGGACGAGGACTTGAATTCCCGCGCAGTGAGAAACCTAGGTCACGGCGCCTGACAGCCGTTTTTTCAAGTGGCCGACAGTGGTTTTTTACGTTTTTTACTTGCCGGGCATAAAAACCGAAAAAATTCGGAAAAATTTCCATGTTAGAAAGGCGCTATGATGCCGTGGCCCAGGTTTCTTACTGCGCGGGAATTCAAATTCTTTTTTTTTCAACGCAGTTTTTCGGGCATTAGGATTTTTTAAAAATTTTTTCGCTTTTAATAATATTAGAAAAATACATATTTTTTAAAACATTTTAAAGGGGGTGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATCCAAGTAGATCCCCATAAAAATAACGAAAAAATTCCTTCATTAATGCCGCGTTCAAAGTTGATTT</canonical>
            <polymorphic>GGCTTCCAAGTCATTCCGCATATCGAATCCAATTAGTTTAAGCTTTGGAGTCTCAAAAAGTCCTTTCGCAAATCTCTCCCATAACAGATCCGGCACTTTTTCTTTCTCCAGCTCCACGCAGTCCACTAGGAGAACCTTGTCCTTGAAGAAAAGTTGGATAATAGCAATTTTTGAAGAACTGAAATTTTGAATTTTTAAATAAAGTGAAATCGGATATATACTTGGCAGTGATCAAGTTTGATGGTTTCCATTCTGAATCGAATCCGACATAAACTGATTTTTCTGGCTCTCGACTTAAGGATTCAATTTCTTCGCAAATACTCTGCATTTCTGATTCGGTTTTAATCATATAAATGGGACATTTATCATCCTCGAAGACATACATCTGTTCACCTTCCTCGGGAGCGCATACCGTTCTGGAATAGGTTATTGAAGTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTTCGAAAAGTTGTCTATTTTCYCAATATTATAGCGAAAAAATTCGAAAAAAGTCCTAAATCTCCGAAAAATGGCGTTAAAAGCGAAAAAATTCAAAAAAAAAGTTGCTAGGAGGGACGAGGACTTGAATTCCCGCGCAGTGAGAAACCTAGGTCACGGCGCCTGACAGCCGTTTTTTCAAGTGGCCGACAGTGGTTTTTTACGTTTTTTACTTGCCGGGCATAAAAACCGAAAAAATTCGGAAAAATTTCCATGTTAGAAAGGCGCTATGATGCCGTGGCCCAGGTTTCTTACTGCGCGGGAATTCAAATTCTTTTTTTTTCAACGCAGTTTTTCGGGCATTAGGATTTTTTAAAAATTTTTTCGCTTTTAATAATATTAGAAAAATACATATTTTTTAAAACATTTTAAAGGGGGTGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATCCAAGTAGATCCCCATAAAAATAACGAAAAAATTCCTTCATTAATGCCGCGTTCAAAGTTGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGGGACATTTATCATCCTC</pcr_primer_p1>
		<pcr_primer_p2>GTCCCTCCTAGCAACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AATGGGACATTTATCATCCTCGAAGACATACATCTGTTCACCTTCCTCGGGAGCGCATACCGTTCTGGAATAGGTTATTGAAGTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTTCGAAAAGTTGTCTATTTTCCCAATATTATAGCGAAAAAATTCGAAAAAAGTCCTAAATCTCCGAAAAATGGCGTTAAAAGCGAAAAAATTCAAAAAAAAAGTTGCTAGGAGGGAC</canonical_amplicon>
		<polymorphic_amplicon>AATGGGACATTTATCATCCTCGAAGACATACATCTGTTCACCTTCCTCGGGAGCGCATACCGTTCTGGAATAGGTTATTGAAGTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATTAAAATGTTCGAAAAGTTGTCTATTTTCYCAATATTATAGCGAAAAAATTCGAAAAAAGTCCTAAATCTCCGAAAAATGGCGTTAAAAGCGAAAAAATTCAAAAAAAAAGTTGCTAGGAGGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30594</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>204437</contig_pos>
        <strand></strand>
        <context>AAAAATTTCG[C/T]TGGCTTTTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGCCGGTTTAAATTTTAAACAGGCAAATATTGCCTGCTTAAAAATTTCG</left_flank>
        <right_flank>TGGCTTTTAATGCAAATCACGTGAAATTGAAAGGCCCATAGCTCTGGCAC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCTTCATCAGAGATGCTGTCAAAGAGTGATTTTGAAAGTGTCTTTCAAAAGAAATGTAACAAAAAAACAGAAGATATTTGTCCGTTTTTCGTCCCTTTTTTGTCTGTTTTTCCGTCAGGTTCGACCTTCAAGGTTAGNCCGTCAGGTCCGTCCGTCATGATCGACCGTCAAGTTCGACCGTCAGGTTCGACCGCGTGGCGTCGGCCAAACGGTCGAACCTGACGAAAAAACCTGACGGTCAGACCTGACGGACGAACCTGACGGCCTAACCTGACTATGACAGACTGTCAACTGCGAAAATGTTTTCTTGACATTTGGAGCATTTTATCAGTTGACCGTTTTCTGCTATCTTTCATAAGAACTGAGATATTTAAGATTGAAGCTACATTGAAGGGATAATAGTGACTCAAAACGTAAATTCTATTCTCAAAAAAAAAGCGGCATTTGAGGCCGGTTTAAATTTTAAACAGGCAAATATTGCCTGCTTAAAAATTTCGCTGGCTTTTAATGCAAATCACGTGAAATTGAAAGGCCCATAGCTCTGGCACTGGCGGCTAGTTTTCTGATATATATATATATATTGTACAGAGAAAACTACCAAAATACTTGTCGTTTCTAAGTTCAGAGCTCATTTTATCACATTCGGAAATATTCCGAAAAGTTGTGTAAAAAGCCAAGGTGTTTTACTAATTACGACGAATATGTCGAGTCGACTTTGTTGCTTAAAATTGTTCTCAATAAGATCGTTTGAATAATCGCTTCATTAGAAATTGTGTGCAGGTGTCAACAAGTGATTTTGAAAGTTTCTTTCAAAAGAATGTAACAAAAACAGAAGATATAAAACAGTTTGTATATAATGTAACGAGAAGCAGGTTTTGGGCAATTACTCTTTGACTACACCACTCTTTGACTACACCTACTCTTTGACTACAAAATTTCTTTGACTACATTTATCTCTTCGACTACACTTGTCTCTTTGACTACAAAGTCTCTTTGAC</canonical>
            <polymorphic>TTGCTTCATCAGAGATGCTGTCAAAGAGTGATTTTGAAAGTGTCTTTCAAAAGAAATGTAACAAAAAAACAGAAGATATTTGTCCGTTTTTCGTCCCTTTTTTGTCTGTTTTTCCGTCAGGTTCGACCTTCAAGGTTAGNCCGTCAGGTCCGTCCGTCATGATCGACCGTCAAGTTCGACCGTCAGGTTCGACCGCGTGGCGTCGGCCAAACGGTCGAACCTGACGAAAAAACCTGACGGTCAGACCTGACGGACGAACCTGACGGCCTAACCTGACTATGACAGACTGTCAACTGCGAAAATGTTTTCTTGACATTTGGAGCATTTTATCAGTTGACCGTTTTCTGCTATCTTTCATAAGAACTGAGATATTTAAGATTGAAGCTACATTGAAGGGATAATAGTGACTCAAAACGTAAATTCTATTCTCAAAAAAAAAGCGGCATTTGAGGCCGGTTTAAATTTTAAACAGGCAAATATTGCCTGCTTAAAAATTTCGYTGGCTTTTAATGCAAATCACGTGAAATTGAAAGGCCCATAGCTCTGGCACTGGCGGCTAGTTTTCTGATATATATATATATATTGTACAGAGAAAACTACCAAAATACTTGTCGTTTCTAAGTTCAGAGCTCATTTTATCACATTCGGAAATATTCCGAAAAGTTGTGTAAAAAGCCAAGGTGTTTTACTAATTACGACGAATATGTCGAGTCGACTTTGTTGCTTAAAATTGTTCTCAATAAGATCGTTTGAATAATCGCTTCATTAGAAATTGTGTGCAGGTGTCAACAAGTGATTTTGAAAGTTTCTTTCAAAAGAATGTAACAAAAACAGAAGATATAAAACAGTTTGTATATAATGTAACGAGAAGCAGGTTTTGGGCAATTACTCTTTGACTACACCACTCTTTGACTACACCTACTCTTTGACTACAAAATTTCTTTGACTACATTTATCTCTTCGACTACACTTGTCTCTTTGACTACAAAGTCTCTTTGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 484 17</canonical_bands>
                <polymorphic_bands>516 484</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTGAAGGGATAATAGTGACTC</pcr_primer_p1>
		<pcr_primer_p2>AGAAACGACAAGTATTTTGGTAG</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>CATTGAAGGGATAATAGTGACTCAAAACGTAAATTCTATTCTCAAAAAAAAAGCGGCATTTGAGGCCGGTTTAAATTTTAAACAGGCAAATATTGCCTGCTTAAAAATTTCGCTGGCTTTTAATGCAAATCACGTGAAATTGAAAGGCCCATAGCTCTGGCACTGGCGGCTAGTTTTCTGATATATATATATATATTGTACAGAGAAAACTACCAAAATACTTGTCGTTTCT</canonical_amplicon>
		<polymorphic_amplicon>CATTGAAGGGATAATAGTGACTCAAAACGTAAATTCTATTCTCAAAAAAAAAGCGGCATTTGAGGCCGGTTTAAATTTTAAACAGGCAAATATTGCCTGCTTAAAAATTTCGYTGGCTTTTAATGCAAATCACGTGAAATTGAAAGGCCCATAGCTCTGGCACTGGCGGCTAGTTTTCTGATATATATATATATATTGTACAGAGAAAACTACCAAAATACTTGTCGTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30595</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>207753</contig_pos>
        <strand>+</strand>
        <context>GTCATAACTC[A/C]TTTTTTTATM</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTCTCCAGATACTCTCTCCTCTCTCTCCCCGCTTTTTCTGTCATAACTC</left_flank>
        <right_flank>TTTTTTTATAATTCTCCATCCATTCGTTTTTTAAATGTTTTCCCTTCTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTAAAAATTTCAATCCCTGTGTTTCCATTGCTACTGAACACCAGAAAAAAAAATCGAATTTGGTACCACACGAATCACTCATTTTGTACCCCGCGGTCCCCCGAATCGTTGCACCCTGCGAATTCTTTGCCGTAAAAGTAGTTTTTCATCTTTTAGGTTCTCATTACTCTGATGTAACCACTTGCATTGCGCGCCACCACTTTTCTTCAGTCCATGTAACACCGTCCCCTTCTTCTTCTCGCAGCTAAATAGCAACCATACCACTCTCCTCCCATTCTCAAACTTTTTTTCTTTCTCTTTTATCATCTCTTTAGATCTCCGTCCCGTAATTCGTAGTACAACTTTTTTCATAAAAAGACAAAAATAATGCCTGGTGTAAATCTCGTAGTTTGTGAGCTCCAATTTTTGTAGTGATCGAGTCAGAATGCTCGTGATTTTCTATTCTTCCTTCTCCAGATACTCTCTCCTCTCTCTCCCCGCTTTTTCTGTCATAACTCTTTTTTTTATAATTCTCCATCCATTCGTTTTTTAAATGTTTTCCCTTCTCTGAAATGGTTTTCCGAAAAAAAAACCGTCTTCTTTTTCTCTGTCTTTGTAATAGTTTTCAAATTTTACTTTCCAGGTACTGCACATGAAAGTGATACATTTCAAAGGAGCGGCGTTTCGCCACTTGGACGATGGAAAGGTGGAAATGGTTTGAAAACGTTAAAATTTAACCTATCAAGAACCATATTTATTTTTTCAGATGCCTCCTTATTTCTACGACCGGAAGGCCAAGGTAAGTAATGACATAATATCGTTTTCTTATTGGCTACCACTAATATGTTCAAAACTTGTCAAGGTTAACTTTCAGAACGTAGTATTGGTTCTTATGGTTGTCGACATTATCTTCACTTGTTTCTGCATTCTTCCCGCCAACGATCTCGTCGCTTGTGTCCTCTTTGCTACGGTGAGTCACTGGTCTCTGTTGGACGCCATCAAAAAATTGTGATTGGTCT</canonical>
            <polymorphic>GTTTAAAAATTTCAATCCCTGTGTTTCCATTGCTACTGAACACCAGAAAAAAAAATCGAATTTGGTACCACACGAATCACTCATTTTGTACCCCGCGGTCCCCCGAATCGTTGCACCCTGCGAATTCTTTGCCGTAAAAGTAGTTTTTCATCTTTTAGGTTCTCATTACTCTGATGTAACCACTTGCATTGCGCGCCACCACTTTTCTTCAGTCCATGTAACACCGTCCCCTTCTTCTTCTCGCAGCTAAATAGCAACCATACCACTCTCCTCCCATTCTCAAACTTTTTTTCTTTCTCTTTTATCATCTCTTTAGATCTCCGTCCCGTAATTCGTAGTACAACTTTTTTCATAAAAAGACAAAAATAATGCCTGGTGTAAATCTCGTAGTTTGTGAGCTCCAATTTTTGTAGTGATCGAGTCAGAATGCTCGTGATTTTCTATTCTTCCTTCTCCAGATACTCTCTCCTCTCTCTCCCCGCTTTTTCTGTCATAACTCMTTTTTTTATAATTCTCCATCCATTCGTTTTTTAAATGTTTTCCCTTCTCTGAAATGGTTTTCCGAAAAAAAAACCGTCTTCTTTTTCTCTGTCTTTGTAATAGTTTTCAAATTTTACTTTCCAGGTACTGCACATGAAAGTGATACATTTCAAAGGAGCGGCGTTTCGCCACTTGGACGATGGAAAGGTGGAAATGGTTTGAAAACGTTAAAATTTAACCTATCAAGAACCATATTTATTTTTTCAGATGCCTCCTTATTTCTACGACCGGAAGGCCAAGGTAAGTAATGACATAATATCGTTTTCTTATTGGCTACCACTAATATGTTCAAAACTTGTCAAGGTTAACTTTCAGAACGTAGTATTGGTTCTTATGGTTGTCGACATTATCTTCACTTGTTTCTGCATTCTTCCCGCCAACGATCTCGTCGCTTGTGTCCTCTTTGCTACGGTGAGTCACTGGTCTCTGTTGGACGCCATCAAAAAATTGTGATTGGTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGTAGTGATCGAGTCAGAAT</pcr_primer_p1>
		<pcr_primer_p2>CTTTGAAATGTATCACTTTCATGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTGTAGTGATCGAGTCAGAATGCTCGTGATTTTCTATTCTTCCTTCTCCAGATACTCTCTCCTCTCTCTCCCCGCTTTTTCTGTCATAACTCTTTTTTTTATAATTCTCCATCCATTCGTTTTTTAAATGTTTTCCCTTCTCTGAAATGGTTTTCCGAAAAAAAAACCGTCTTCTTTTTCTCTGTCTTTGTAATAGTTTTCAAATTTTACTTTCCAGGTACTGCACATGAAAGTGATACATTTCAAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTTGTAGTGATCGAGTCAGAATGCTCGTGATTTTCTATTCTTCCTTCTCCAGATACTCTCTCCTCTCTCTCCCCGCTTTTTCTGTCATAACTCMTTTTTTTATAATTCTCCATCCATTCGTTTTTTAAATGTTTTCCCTTCTCTGAAATGGTTTTCCGAAAAAAAAACCGTCTTCTTTTTCTCTGTCTTTGTAATAGTTTTCAAATTTTACTTTCCAGGTACTGCACATGAAAGTGATACATTTCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30596</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>274744</contig_pos>
        <strand>+</strand>
        <context>AGACTCAACA[A/C]CAACAATTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATTTTTTGAACCATTTTTAGTATTAATATTTTTTTGAATAGACTCAACA</left_flank>
        <right_flank>CAACAATTTATTTAAAACAACAAAACTGACAGTTTGGACAAGGACGATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTGCGGAAGATATCAAAAGCTTGTCAACGGATAAATTAGTTATCATAATACCACCACTATTTTATCAGTTGACAGAGTTTTCATATCTTTCACAGAAATCGAGATAACTCATCTCAATGTTGACGATACATCGGTTTCTAAATATTAGACCGACCGAATACGGTATTTATATATGCTTGATTTCTCTCATCTACATATTTCTGGCCTGGATCTGGCTTGGAATCTGGCCTGGAAAACGGAAAAAATGAAAACAGGAAACTTTATAGAGGAAGCTGAAAGAGACTTTCAAAGGGAGGCGCTATACTAGTTGGAAGGGGTCACTTTTTTTCGCGATTTTATCACTTTTTTCGACATAAAAATGATCGCTGATTATTTCTATGATGTTTTTAAGTTGTTAGGACACAAAAAATTTTTTTTTCAAAAATAGTTCTCAAAATATAATTCTCGGATTTTTTGAACCATTTTTAGTATTAATATTTTTTTGAATAGACTCAACACCAACAATTTATTTAAAACAACAAAACTGACAGTTTGGACAAGGACGATTTTTCCAGAAGAGACCTCTTGCGGCGAGATAATCGTCAAACTCGTCCTTGGTCATCGAGGCCACTTCGGGCCATCCAGAGAATAAATTGAAGCTTCTAAGGCTTAAAAGAGCAGCCTGAGCAGACATTTTGACGAACTAGTTCAACTATTTTAGGAGATGTAACTCGACTAAAACGTAAACAACAACAACAACTTTGAAATGAGCAATATACTGTTTTTAGCTTTTACCATTTTTACCTAAGCCTAGAACATTGAGGACAAATTCGCAGCTCCTTCGTTAAAACTATTGCCATTACTGAAATAGGCTTAGGCTTCCAGGATAGAAATCTGCAAATTCAGAAGAAATTCTAAGTGAAAACGAAAAAAATAAATTGAAATGTTTGAAAAAATGAAAAAAAAACTGCTGAAAAATTTTTGATGGTTTCAGAAAATCCGAGAATTATATTTTGAAA</canonical>
            <polymorphic>TCCTGCGGAAGATATCAAAAGCTTGTCAACGGATAAATTAGTTATCATAATACCACCACTATTTTATCAGTTGACAGAGTTTTCATATCTTTCACAGAAATCGAGATAACTCATCTCAATGTTGACGATACATCGGTTTCTAAATATTAGACCGACCGAATACGGTATTTATATATGCTTGATTTCTCTCATCTACATATTTCTGGCCTGGATCTGGCTTGGAATCTGGCCTGGAAAACGGAAAAAATGAAAACAGGAAACTTTATAGAGGAAGCTGAAAGAGACTTTCAAAGGGAGGCGCTATACTAGTTGGAAGGGGTCACTTTTTTTCGCGATTTTATCACTTTTTTCGACATAAAAATGATCGCTGATTATTTCTATGATGTTTTTAAGTTGTTAGGACACAAAAAATTTTTTTTTCAAAAATAGTTCTCAAAATATAATTCTCGGATTTTTTGAACCATTTTTAGTATTAATATTTTTTTGAATAGACTCAACAMCAACAATTTATTTAAAACAACAAAACTGACAGTTTGGACAAGGACGATTTTTCCAGAAGAGACCTCTTGCGGCGAGATAATCGTCAAACTCGTCCTTGGTCATCGAGGCCACTTCGGGCCATCCAGAGAATAAATTGAAGCTTCTAAGGCTTAAAAGAGCAGCCTGAGCAGACATTTTGACGAACTAGTTCAACTATTTTAGGAGATGTAACTCGACTAAAACGTAAACAACAACAACAACTTTGAAATGAGCAATATACTGTTTTTAGCTTTTACCATTTTTACCTAAGCCTAGAACATTGAGGACAAATTCGCAGCTCCTTCGTTAAAACTATTGCCATTACTGAAATAGGCTTAGGCTTCCAGGATAGAAATCTGCAAATTCAGAAGAAATTCTAAGTGAAAACGAAAAAAATAAATTGAAATGTTTGAAAAAATGAAAAAAAAACTGCTGAAAAATTTTTGATGGTTTCAGAAAATCCGAGAATTATATTTTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>291 228 112 98 95 61 55 36 21 3</canonical_bands>
                <polymorphic_bands>291 228 207 98 61 55 36 21 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGATCGCTGATTATTTCTATG</pcr_primer_p1>
		<pcr_primer_p2>AAGGACGAGTTTGACGATTAT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AATGATCGCTGATTATTTCTATGATGTTTTTAAGTTGTTAGGACACAAAAAATTTTTTTTTCAAAAATAGTTCTCAAAATATAATTCTCGGATTTTTTGAACCATTTTTAGTATTAATATTTTTTTGAATAGACTCAACACCAACAATTTATTTAAAACAACAAAACTGACAGTTTGGACAAGGACGATTTTTCCAGAAGAGACCTCTTGCGGCGAGATAATCGTCAAACTCGTCCTT</canonical_amplicon>
		<polymorphic_amplicon>AATGATCGCTGATTATTTCTATGATGTTTTTAAGTTGTTAGGACACAAAAAATTTTTTTTTCAAAAATAGTTCTCAAAATATAATTCTCGGATTTTTTGAACCATTTTTAGTATTAATATTTTTTTGAATAGACTCAACAMCAACAATTTATTTAAAACAACAAAACTGACAGTTTGGACAAGGACGATTTTTCCAGAAGAGACCTCTTGCGGCGAGATAATCGTCAAACTCGTCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30597</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>276533</contig_pos>
        <strand>+</strand>
        <context>TCATGCCGTG[C/T]TTTTTTTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAACGTTATCGTTCTAGGTATTGTGTCAATCACATTTTTTCATGCCGTG</left_flank>
        <right_flank>TTTTTTTCCAGATCTCCCAAACCATCATACAGCTACAACCAATCGACAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAATCGATGCGTTTAGAGATCAAATCGCCAAGTGGGAAGAAGAGGAAGAGTTGAATGAGCCATGTGAATATCGGCAATTAAAAATTGAAATTTTCACGCAAAAGAAAATTGAATACCAAAGAAAAAATAATTTGGCAGTCGACGAATTCTATAAGAAGAGAAATCTTAAGAATCACAGCAACAGAAAACCGTTGGAAGAGAGCAGGAGAAGAGAGGAGCCTCGAGATAGAGTCCACGAATCGAATATAGACATAACGGTAATTAATTGTTTCAATGCCATGTTTGTAGCATAATAACCAAAGTAATTTGAACTGATTTGCAGCATCGTGGCGATAGCACCAGTCTGAATCATTATTCTCGGCACCATTATTCTCAACGACAATCACAAAGTTCTCGGTTCGAAAGAGAGCGTGAATCCGACGAGGAAGAGGAAAATAGTCAGCCGATTCAACGTTATCGTTCTAGGTATTGTGTCAATCACATTTTTTCATGCCGTGTTTTTTTTCCAGATCTCCCAAACCATCATACAGCTACAACCAATCGACAATGCAACAGTCACAACGTGATGATACCAACGTTTACCATAGAAGCCATCAAAGCACATCTCAACCTCCACAAGTGAGAATGCGTTCCGGAAAAAGCCGTGTCACGAAGACACACAACCGCAAGTTTCGACCTGGACAGAAAGCCTTGGCTGAAATTCGAAAGTATCAGAAGTCGACAGATATGTTGATCCAGAAGGTTGGTTTTTACCTCATGTGTTATCACAATCAATATTTTTATTCTAGGCTCCTTTTGTTCGTCTTGTTCATGAAATTATTCGAGAACAAACCTACAAAAGTCAAGACTATCGTATTCGTGCGGATGCTTTGATGGCTCTACAGGAAGCAGCAGAAGCATTCATGGTTGAAATGTTCGAAGGATCCGTACTGATTTGCAATCACGCTAAGCGTGTCACACTCATGCCCACTGACATTCAGCTGTATCGTCGCTTGTGC</canonical>
            <polymorphic>AATAATCGATGCGTTTAGAGATCAAATCGCCAAGTGGGAAGAAGAGGAAGAGTTGAATGAGCCATGTGAATATCGGCAATTAAAAATTGAAATTTTCACGCAAAAGAAAATTGAATACCAAAGAAAAAATAATTTGGCAGTCGACGAATTCTATAAGAAGAGAAATCTTAAGAATCACAGCAACAGAAAACCGTTGGAAGAGAGCAGGAGAAGAGAGGAGCCTCGAGATAGAGTCCACGAATCGAATATAGACATAACGGTAATTAATTGTTTCAATGCCATGTTTGTAGCATAATAACCAAAGTAATTTGAACTGATTTGCAGCATCGTGGCGATAGCACCAGTCTGAATCATTATTCTCGGCACCATTATTCTCAACGACAATCACAAAGTTCTCGGTTCGAAAGAGAGCGTGAATCCGACGAGGAAGAGGAAAATAGTCAGCCGATTCAACGTTATCGTTCTAGGTATTGTGTCAATCACATTTTTTCATGCCGTGYTTTTTTTCCAGATCTCCCAAACCATCATACAGCTACAACCAATCGACAATGCAACAGTCACAACGTGATGATACCAACGTTTACCATAGAAGCCATCAAAGCACATCTCAACCTCCACAAGTGAGAATGCGTTCCGGAAAAAGCCGTGTCACGAAGACACACAACCGCAAGTTTCGACCTGGACAGAAAGCCTTGGCTGAAATTCGAAAGTATCAGAAGTCGACAGATATGTTGATCCAGAAGGTTGGTTTTTACCTCATGTGTTATCACAATCAATATTTTTATTCTAGGCTCCTTTTGTTCGTCTTGTTCATGAAATTATTCGAGAACAAACCTACAAAAGTCAAGACTATCGTATTCGTGCGGATGCTTTGATGGCTCTACAGGAAGCAGCAGAAGCATTCATGGTTGAAATGTTCGAAGGATCCGTACTGATTTGCAATCACGCTAAGCGTGTCACACTCATGCCCACTGACATTCAGCTGTATCGTCGCTTGTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTATTCTCGGCACCATTATT</pcr_primer_p1>
		<pcr_primer_p2>CTTTGATGGCTTCTATGGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTATTCTCGGCACCATTATTCTCAACGACAATCACAAAGTTCTCGGTTCGAAAGAGAGCGTGAATCCGACGAGGAAGAGGAAAATAGTCAGCCGATTCAACGTTATCGTTCTAGGTATTGTGTCAATCACATTTTTTCATGCCGTGTTTTTTTTCCAGATCTCCCAAACCATCATACAGCTACAACCAATCGACAATGCAACAGTCACAACGTGATGATACCAACGTTTACCATAGAAGCCATCAAAG</canonical_amplicon>
		<polymorphic_amplicon>ATTATTCTCGGCACCATTATTCTCAACGACAATCACAAAGTTCTCGGTTCGAAAGAGAGCGTGAATCCGACGAGGAAGAGGAAAATAGTCAGCCGATTCAACGTTATCGTTCTAGGTATTGTGTCAATCACATTTTTTCATGCCGTGYTTTTTTTCCAGATCTCCCAAACCATCATACAGCTACAACCAATCGACAATGCAACAGTCACAACGTGATGATACCAACGTTTACCATAGAAGCCATCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30598</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>281057</contig_pos>
        <strand>+</strand>
        <context>ATCCATTATG[C/T]AGCAACACTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTATGATCCATCGAATAGTCAAGCAATTCTGACACTCGGATCCATTATG</left_flank>
        <right_flank>AGCAACACTATGATCATGATGTGGCATTGAATAAATACAGGCTTTTTGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGAAACCTTCTTATGGGGTATGAACCTAAATTTTACATTTGAACCGTAATAGAAATGCACCACACTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATAATAGATATCAAATATGTTTAATTGATAAATCATTTATCTAGACATTAGCATATATTTTATCAGTTGACAGATTTTCGATATTAAAGGCTAAGGAGCCCTTCTATTGCAGGTTTTACGATATTTATTTTTATAAGTTTTCAGATCAACTGTTGCTAAAGATGCGGAATTGATTACTTTCCTTGGACGTCTCTGTGAAGAACTTCAGGATACAGAGGGAGCGATTGCAGCATACGAATCAGCAATGAAACTGCAACCTGATAATACAGATGTGATGATTCGTTTGGCATTGGTTTTGTTGAGAATGGGAAAAGAGAAAGAAGGTTTCGAACAACTTGGTAACTGTTTGGCTTATGATCCATCGAATAGTCAAGCAATTCTGACACTCGGATCCATTATGTAGCAACACTATGATCATGATGTGGCATTGAATAAATACAGGCTTTTTGAACTATTAGAAAGGTTTTTCTGACGGAAAACCAATTTAGAGTGGCCGCAGATGCTTGCGATTATAATGGATGTCTCTGGAATAATATTGGAATAGGTCTTCTGGCAAGAAACAAATCTGCTGCTGCTCATTCGGCACTCAAAAAAGCTTCTTTCATAAGTCCTCTAGATTATAAGTAAGTACACATTTTACCATAAAGTGTCCATTTTTTATTCTTTTTAGAATCAGTTTAAATTTAGGAGTTCTCCATGATATCATGAAATTACATTGCTCGGCTCTTCATTACATTAAATTATGTACTGAACTGAAACCGAATAATGCAAAGGCAGTTGGTGCAATGGCAGTGATAATGTCGCATATGAACGATGTCAAAAATGCAAGAGCAGCTTACAAGAAGTCAATTGAGTTACAACCATCTCCATCTATTGTAAGAACTTTGTTGTTTTTCTTGCA</canonical>
            <polymorphic>CGAGAAACCTTCTTATGGGGTATGAACCTAAATTTTACATTTGAACCGTAATAGAAATGCACCACACTGTCAAGTTTGAGCTCAATTATCTCAATTCCTATAATAGATATCAAATATGTTTAATTGATAAATCATTTATCTAGACATTAGCATATATTTTATCAGTTGACAGATTTTCGATATTAAAGGCTAAGGAGCCCTTCTATTGCAGGTTTTACGATATTTATTTTTATAAGTTTTCAGATCAACTGTTGCTAAAGATGCGGAATTGATTACTTTCCTTGGACGTCTCTGTGAAGAACTTCAGGATACAGAGGGAGCGATTGCAGCATACGAATCAGCAATGAAACTGCAACCTGATAATACAGATGTGATGATTCGTTTGGCATTGGTTTTGTTGAGAATGGGAAAAGAGAAAGAAGGTTTCGAACAACTTGGTAACTGTTTGGCTTATGATCCATCGAATAGTCAAGCAATTCTGACACTCGGATCCATTATGYAGCAACACTATGATCATGATGTGGCATTGAATAAATACAGGCTTTTTGAACTATTAGAAAGGTTTTTCTGACGGAAAACCAATTTAGAGTGGCCGCAGATGCTTGCGATTATAATGGATGTCTCTGGAATAATATTGGAATAGGTCTTCTGGCAAGAAACAAATCTGCTGCTGCTCATTCGGCACTCAAAAAAGCTTCTTTCATAAGTCCTCTAGATTATAAGTAAGTACACATTTTACCATAAAGTGTCCATTTTTTATTCTTTTTAGAATCAGTTTAAATTTAGGAGTTCTCCATGATATCATGAAATTACATTGCTCGGCTCTTCATTACATTAAATTATGTACTGAACTGAAACCGAATAATGCAAAGGCAGTTGGTGCAATGGCAGTGATAATGTCGCATATGAACGATGTCAAAAATGCAAGAGCAGCTTACAAGAAGTCAATTGAGTTACAACCATCTCCATCTATTGTAAGAACTTTGTTGTTTTTCTTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAATGGGAAAAGAGAAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>ACCTATTCCAATATTATTCCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGAATGGGAAAAGAGAAAGAAGGTTTCGAACAACTTGGTAACTGTTTGGCTTATGATCCATCGAATAGTCAAGCAATTCTGACACTCGGATCCATTATGTAGCAACACTATGATCATGATGTGGCATTGAATAAATACAGGCTTTTTGAACTATTAGAAAGGTTTTTCTGACGGAAAACCAATTTAGAGTGGCCGCAGATGCTTGCGATTATAATGGATGTCTCTGGAATAATATTGGAATAGGT</canonical_amplicon>
		<polymorphic_amplicon>AGAATGGGAAAAGAGAAAGAAGGTTTCGAACAACTTGGTAACTGTTTGGCTTATGATCCATCGAATAGTCAAGCAATTCTGACACTCGGATCCATTATGYAGCAACACTATGATCATGATGTGGCATTGAATAAATACAGGCTTTTTGAACTATTAGAAAGGTTTTTCTGACGGAAAACCAATTTAGAGTGGCCGCAGATGCTTGCGATTATAATGGATGTCTCTGGAATAATATTGGAATAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30599</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>281342</contig_pos>
        <strand>+</strand>
        <context>GTTTAAATTT[A/G]GGAGTTCTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTACCATAAAGTGTCCATTTTTTATTCTTTTTAGAATCAGTTTAAATTT</left_flank>
        <right_flank>GGAGTTCTCCATGATATCATGAAATTACATTGCTCGGCTCTTCATTACAT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGTCTCTGTGAAGAACTTCAGGATACAGAGGGAGCGATTGCAGCATACGAATCAGCAATGAAACTGCAACCTGATAATACAGATGTGATGATTCGTTTGGCATTGGTTTTGTTGAGAATGGGAAAAGAGAAAGAAGGTTTCGAACAACTTGGTAACTGTTTGGCTTATGATCCATCGAATAGTCAAGCAATTCTGACACTCGGATCCATTATGTAGCAACACTATGATCATGATGTGGCATTGAATAAATACAGGCTTTTTGAACTATTAGAAAGGTTTTTCTGACGGAAAACCAATTTAGAGTGGCCGCAGATGCTTGCGATTATAATGGATGTCTCTGGAATAATATTGGAATAGGTCTTCTGGCAAGAAACAAATCTGCTGCTGCTCATTCGGCACTCAAAAAAGCTTCTTTCATAAGTCCTCTAGATTATAAGTAAGTACACATTTTACCATAAAGTGTCCATTTTTTATTCTTTTTAGAATCAGTTTAAATTTAGGAGTTCTCCATGATATCATGAAATTACATTGCTCGGCTCTTCATTACATTAAATTATGTACTGAACTGAAACCGAATAATGCAAAGGCAGTTGGTGCAATGGCAGTGATAATGTCGCATATGAACGATGTCAAAAATGCAAGAGCAGCTTACAAGAAGTCAATTGAGTTACAACCATCTCCATCTATTGTAAGAACTTTGTTGTTTTTCTTGCACTTACCGTATTTCCTCTAATAGGAGCTCACCCAAACCGTCAACTTTCAGCGGCCTAATTATCTCAGTTTGAAAAATATCAAAAAGTGATCCTTTAATCCATAATATCCTAATATCAGTAATATTTTGTAAGTTGACAAATTTTTGTTATTTTCCACAGGAATCGAGATAATTTGGCTCAAATAAGACGGTTTGTGTAACACTCTATTAGACGAATTACTTTTTTTTCAGGTGCTCAATTATGCAATCTTCGAATATCGCACAAAGAACTTTGCGGCTGCATCAAC</canonical>
            <polymorphic>ACGTCTCTGTGAAGAACTTCAGGATACAGAGGGAGCGATTGCAGCATACGAATCAGCAATGAAACTGCAACCTGATAATACAGATGTGATGATTCGTTTGGCATTGGTTTTGTTGAGAATGGGAAAAGAGAAAGAAGGTTTCGAACAACTTGGTAACTGTTTGGCTTATGATCCATCGAATAGTCAAGCAATTCTGACACTCGGATCCATTATGTAGCAACACTATGATCATGATGTGGCATTGAATAAATACAGGCTTTTTGAACTATTAGAAAGGTTTTTCTGACGGAAAACCAATTTAGAGTGGCCGCAGATGCTTGCGATTATAATGGATGTCTCTGGAATAATATTGGAATAGGTCTTCTGGCAAGAAACAAATCTGCTGCTGCTCATTCGGCACTCAAAAAAGCTTCTTTCATAAGTCCTCTAGATTATAAGTAAGTACACATTTTACCATAAAGTGTCCATTTTTTATTCTTTTTAGAATCAGTTTAAATTTRGGAGTTCTCCATGATATCATGAAATTACATTGCTCGGCTCTTCATTACATTAAATTATGTACTGAACTGAAACCGAATAATGCAAAGGCAGTTGGTGCAATGGCAGTGATAATGTCGCATATGAACGATGTCAAAAATGCAAGAGCAGCTTACAAGAAGTCAATTGAGTTACAACCATCTCCATCTATTGTAAGAACTTTGTTGTTTTTCTTGCACTTACCGTATTTCCTCTAATAGGAGCTCACCCAAACCGTCAACTTTCAGCGGCCTAATTATCTCAGTTTGAAAAATATCAAAAAGTGATCCTTTAATCCATAATATCCTAATATCAGTAATATTTTGTAAGTTGACAAATTTTTGTTATTTTCCACAGGAATCGAGATAATTTGGCTCAAATAAGACGGTTTGTGTAACACTCTATTAGACGAATTACTTTTTTTTCAGGTGCTCAATTATGCAATCTTCGAATATCGCACAAAGAACTTTGCGGCTGCATCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCTGGAATAATATTGGAATAGG</pcr_primer_p1>
		<pcr_primer_p2>CATTATTCGGTTTCAGTTCAGTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTCTGGAATAATATTGGAATAGGTCTTCTGGCAAGAAACAAATCTGCTGCTGCTCATTCGGCACTCAAAAAAGCTTCTTTCATAAGTCCTCTAGATTATAAGTAAGTACACATTTTACCATAAAGTGTCCATTTTTTATTCTTTTTAGAATCAGTTTAAATTTAGGAGTTCTCCATGATATCATGAAATTACATTGCTCGGCTCTTCATTACATTAAATTATGTACTGAACTGAAACCGAATAATG</canonical_amplicon>
		<polymorphic_amplicon>TCTCTGGAATAATATTGGAATAGGTCTTCTGGCAAGAAACAAATCTGCTGCTGCTCATTCGGCACTCAAAAAAGCTTCTTTCATAAGTCCTCTAGATTATAAGTAAGTACACATTTTACCATAAAGTGTCCATTTTTTATTCTTTTTAGAATCAGTTTAAATTTRGGAGTTCTCCATGATATCATGAAATTACATTGCTCGGCTCTTCATTACATTAAATTATGTACTGAACTGAAACCGAATAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30600</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>281356</contig_pos>
        <strand>+</strand>
        <context>GTTCTCCATG[A/T]TATCATGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCATTTTTTATTCTTTTTAGAATCAGTTTAAATTTAGGAGTTCTCCATG</left_flank>
        <right_flank>TATCATGAAATTACATTGCTCGGCTCTTCATTACATTAAATTATGTACTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTTCAGGATACAGAGGGAGCGATTGCAGCATACGAATCAGCAATGAAACTGCAACCTGATAATACAGATGTGATGATTCGTTTGGCATTGGTTTTGTTGAGAATGGGAAAAGAGAAAGAAGGTTTCGAACAACTTGGTAACTGTTTGGCTTATGATCCATCGAATAGTCAAGCAATTCTGACACTCGGATCCATTATGTAGCAACACTATGATCATGATGTGGCATTGAATAAATACAGGCTTTTTGAACTATTAGAAAGGTTTTTCTGACGGAAAACCAATTTAGAGTGGCCGCAGATGCTTGCGATTATAATGGATGTCTCTGGAATAATATTGGAATAGGTCTTCTGGCAAGAAACAAATCTGCTGCTGCTCATTCGGCACTCAAAAAAGCTTCTTTCATAAGTCCTCTAGATTATAAGTAAGTACACATTTTACCATAAAGTGTCCATTTTTTATTCTTTTTAGAATCAGTTTAAATTTAGGAGTTCTCCATGATATCATGAAATTACATTGCTCGGCTCTTCATTACATTAAATTATGTACTGAACTGAAACCGAATAATGCAAAGGCAGTTGGTGCAATGGCAGTGATAATGTCGCATATGAACGATGTCAAAAATGCAAGAGCAGCTTACAAGAAGTCAATTGAGTTACAACCATCTCCATCTATTGTAAGAACTTTGTTGTTTTTCTTGCACTTACCGTATTTCCTCTAATAGGAGCTCACCCAAACCGTCAACTTTCAGCGGCCTAATTATCTCAGTTTGAAAAATATCAAAAAGTGATCCTTTAATCCATAATATCCTAATATCAGTAATATTTTGTAAGTTGACAAATTTTTGTTATTTTCCACAGGAATCGAGATAATTTGGCTCAAATAAGACGGTTTGTGTAACACTCTATTAGACGAATTACTTTTTTTTCAGGTGCTCAATTATGCAATCTTCGAATATCGCACAAAGAACTTTGCGGCTGCATCAACAGCGGTTAAAATCT</canonical>
            <polymorphic>AACTTCAGGATACAGAGGGAGCGATTGCAGCATACGAATCAGCAATGAAACTGCAACCTGATAATACAGATGTGATGATTCGTTTGGCATTGGTTTTGTTGAGAATGGGAAAAGAGAAAGAAGGTTTCGAACAACTTGGTAACTGTTTGGCTTATGATCCATCGAATAGTCAAGCAATTCTGACACTCGGATCCATTATGTAGCAACACTATGATCATGATGTGGCATTGAATAAATACAGGCTTTTTGAACTATTAGAAAGGTTTTTCTGACGGAAAACCAATTTAGAGTGGCCGCAGATGCTTGCGATTATAATGGATGTCTCTGGAATAATATTGGAATAGGTCTTCTGGCAAGAAACAAATCTGCTGCTGCTCATTCGGCACTCAAAAAAGCTTCTTTCATAAGTCCTCTAGATTATAAGTAAGTACACATTTTACCATAAAGTGTCCATTTTTTATTCTTTTTAGAATCAGTTTAAATTTAGGAGTTCTCCATGWTATCATGAAATTACATTGCTCGGCTCTTCATTACATTAAATTATGTACTGAACTGAAACCGAATAATGCAAAGGCAGTTGGTGCAATGGCAGTGATAATGTCGCATATGAACGATGTCAAAAATGCAAGAGCAGCTTACAAGAAGTCAATTGAGTTACAACCATCTCCATCTATTGTAAGAACTTTGTTGTTTTTCTTGCACTTACCGTATTTCCTCTAATAGGAGCTCACCCAAACCGTCAACTTTCAGCGGCCTAATTATCTCAGTTTGAAAAATATCAAAAAGTGATCCTTTAATCCATAATATCCTAATATCAGTAATATTTTGTAAGTTGACAAATTTTTGTTATTTTCCACAGGAATCGAGATAATTTGGCTCAAATAAGACGGTTTGTGTAACACTCTATTAGACGAATTACTTTTTTTTCAGGTGCTCAATTATGCAATCTTCGAATATCGCACAAAGAACTTTGCGGCTGCATCAACAGCGGTTAAAATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCTGGAATAATATTGGAATAGG</pcr_primer_p1>
		<pcr_primer_p2>CATTATTCGGTTTCAGTTCAGTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTCTGGAATAATATTGGAATAGGTCTTCTGGCAAGAAACAAATCTGCTGCTGCTCATTCGGCACTCAAAAAAGCTTCTTTCATAAGTCCTCTAGATTATAAGTAAGTACACATTTTACCATAAAGTGTCCATTTTTTATTCTTTTTAGAATCAGTTTAAATTTAGGAGTTCTCCATGATATCATGAAATTACATTGCTCGGCTCTTCATTACATTAAATTATGTACTGAACTGAAACCGAATAATG</canonical_amplicon>
		<polymorphic_amplicon>TCTCTGGAATAATATTGGAATAGGTCTTCTGGCAAGAAACAAATCTGCTGCTGCTCATTCGGCACTCAAAAAAGCTTCTTTCATAAGTCCTCTAGATTATAAGTAAGTACACATTTTACCATAAAGTGTCCATTTTTTATTCTTTTTAGAATCAGTTTAAATTTAGGAGTTCTCCATGWTATCATGAAATTACATTGCTCGGCTCTTCATTACATTAAATTATGTACTGAACTGAAACCGAATAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30601</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>281394</contig_pos>
        <strand>+</strand>
        <context>TCATTACATT[A/T]AATTATGTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGTTCTCCATGATATCATGAAATTACATTGCTCGGCTCTTCATTACATT</left_flank>
        <right_flank>AATTATGTACTGAACTGAAACCGAATAATGCAAAGGCAGTTGGTGCAATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGCAATGAAACTGCAACCTGATAATACAGATGTGATGATTCGTTTGGCATTGGTTTTGTTGAGAATGGGAAAAGAGAAAGAAGGTTTCGAACAACTTGGTAACTGTTTGGCTTATGATCCATCGAATAGTCAAGCAATTCTGACACTCGGATCCATTATGTAGCAACACTATGATCATGATGTGGCATTGAATAAATACAGGCTTTTTGAACTATTAGAAAGGTTTTTCTGACGGAAAACCAATTTAGAGTGGCCGCAGATGCTTGCGATTATAATGGATGTCTCTGGAATAATATTGGAATAGGTCTTCTGGCAAGAAACAAATCTGCTGCTGCTCATTCGGCACTCAAAAAAGCTTCTTTCATAAGTCCTCTAGATTATAAGTAAGTACACATTTTACCATAAAGTGTCCATTTTTTATTCTTTTTAGAATCAGTTTAAATTTAGGAGTTCTCCATGATATCATGAAATTACATTGCTCGGCTCTTCATTACATTAAATTATGTACTGAACTGAAACCGAATAATGCAAAGGCAGTTGGTGCAATGGCAGTGATAATGTCGCATATGAACGATGTCAAAAATGCAAGAGCAGCTTACAAGAAGTCAATTGAGTTACAACCATCTCCATCTATTGTAAGAACTTTGTTGTTTTTCTTGCACTTACCGTATTTCCTCTAATAGGAGCTCACCCAAACCGTCAACTTTCAGCGGCCTAATTATCTCAGTTTGAAAAATATCAAAAAGTGATCCTTTAATCCATAATATCCTAATATCAGTAATATTTTGTAAGTTGACAAATTTTTGTTATTTTCCACAGGAATCGAGATAATTTGGCTCAAATAAGACGGTTTGTGTAACACTCTATTAGACGAATTACTTTTTTTTCAGGTGCTCAATTATGCAATCTTCGAATATCGCACAAAGAACTTTGCGGCTGCATCAACAGCGGTTAAAATCTACAAACAACTTGAGGCATCTGGAATGAAGTGCAGTGAT</canonical>
            <polymorphic>TCAGCAATGAAACTGCAACCTGATAATACAGATGTGATGATTCGTTTGGCATTGGTTTTGTTGAGAATGGGAAAAGAGAAAGAAGGTTTCGAACAACTTGGTAACTGTTTGGCTTATGATCCATCGAATAGTCAAGCAATTCTGACACTCGGATCCATTATGTAGCAACACTATGATCATGATGTGGCATTGAATAAATACAGGCTTTTTGAACTATTAGAAAGGTTTTTCTGACGGAAAACCAATTTAGAGTGGCCGCAGATGCTTGCGATTATAATGGATGTCTCTGGAATAATATTGGAATAGGTCTTCTGGCAAGAAACAAATCTGCTGCTGCTCATTCGGCACTCAAAAAAGCTTCTTTCATAAGTCCTCTAGATTATAAGTAAGTACACATTTTACCATAAAGTGTCCATTTTTTATTCTTTTTAGAATCAGTTTAAATTTAGGAGTTCTCCATGATATCATGAAATTACATTGCTCGGCTCTTCATTACATTWAATTATGTACTGAACTGAAACCGAATAATGCAAAGGCAGTTGGTGCAATGGCAGTGATAATGTCGCATATGAACGATGTCAAAAATGCAAGAGCAGCTTACAAGAAGTCAATTGAGTTACAACCATCTCCATCTATTGTAAGAACTTTGTTGTTTTTCTTGCACTTACCGTATTTCCTCTAATAGGAGCTCACCCAAACCGTCAACTTTCAGCGGCCTAATTATCTCAGTTTGAAAAATATCAAAAAGTGATCCTTTAATCCATAATATCCTAATATCAGTAATATTTTGTAAGTTGACAAATTTTTGTTATTTTCCACAGGAATCGAGATAATTTGGCTCAAATAAGACGGTTTGTGTAACACTCTATTAGACGAATTACTTTTTTTTCAGGTGCTCAATTATGCAATCTTCGAATATCGCACAAAGAACTTTGCGGCTGCATCAACAGCGGTTAAAATCTACAAACAACTTGAGGCATCTGGAATGAAGTGCAGTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>440 258 198 58 46</canonical_bands>
                <polymorphic_bands>440 316 198 46</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGCTTCTTTCATAAGTCCTC</pcr_primer_p1>
		<pcr_primer_p2>GTAAGCTGCTCTTGCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAGCTTCTTTCATAAGTCCTCTAGATTATAAGTAAGTACACATTTTACCATAAAGTGTCCATTTTTTATTCTTTTTAGAATCAGTTTAAATTTAGGAGTTCTCCATGATATCATGAAATTACATTGCTCGGCTCTTCATTACATTAAATTATGTACTGAACTGAAACCGAATAATGCAAAGGCAGTTGGTGCAATGGCAGTGATAATGTCGCATATGAACGATGTCAAAAATGCAAGAGCAGCTTAC</canonical_amplicon>
		<polymorphic_amplicon>AAAAGCTTCTTTCATAAGTCCTCTAGATTATAAGTAAGTACACATTTTACCATAAAGTGTCCATTTTTTATTCTTTTTAGAATCAGTTTAAATTTAGGAGTTCTCCATGATATCATGAAATTACATTGCTCGGCTCTTCATTACATTWAATTATGTACTGAACTGAAACCGAATAATGCAAAGGCAGTTGGTGCAATGGCAGTGATAATGTCGCATATGAACGATGTCAAAAATGCAAGAGCAGCTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30602</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>296254</contig_pos>
        <strand>+</strand>
        <context>TGTTGTCGTC[A/G]GTGGARAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGTTGTTGAGGTGGAAGTCGATGTGGATGTTGAAGTGGATGTTGTCGTC</left_flank>
        <right_flank>GTGGAGAAGATTGTGTTGCAGGATGAGTTGGAGTTGTAGAAGGAGTTGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTAGTAATAAGGAATAAATTATATAATAAATAGCATTTGCATCAAAATTTTATTCCAAATTAGCTTAAAACTTAAGCATCAGGATCAACAACTTTCCTTGGAGGTTTTGGAGTTCCAACTGTTTGGAAGTCAAAGTCGCCATCAGAAGGAATATTCGAAGGTGCAAGAGCGGTATCCGGAGCGTGAGCAGCATCGATTTTAACGGTAGCATACAGAGCAGGTCCGGCTCCACCAACTGGGAAGGGAGTGTTTGGAGGTGTTGGGCTTCTAATCCAGAATGTCGTGCTAGACTCAATTTTATCACCGCCATCAGACTCATCCATAGCGACAGGAACTTCTTCTCCTCTAAGGAATGTTCCTTCTGGCTTTGTCGGAATTGGAGTGGGAGGTGTGGTTGTCGTTGATGGAGTTGTGGTAGTAGACAAGCTGGGCGGAATTTTGGTAGTAGTAGTTGTTGAGGTGGAAGTCGATGTGGATGTTGAAGTGGATGTTGTCGTCGGTGGAGAAGATTGTGTTGCAGGATGAGTTGGAGTTGTAGAAGGAGTTGTTGTTGCAATTGTCGACGAAATTGCCGTTGACGAAGGAGTGGTTGCCGCATGCGTCGTGGATGCAGCAGTTGGTTTTGGCTTACATTTACAAGGACATCTGCACTTGAACTTGAACCCTTCTGGTTCTTGTGGGAAATCTTCTGGCCAGTCTCCTTCACATCCTTCCGAATGGCCACCACCACCACCACCTGAAGCTAGGAAAAATGAAAACTTGACGTTTCCCTGAGTTCCCTGAATAGTCTTATCAAAAGCAAAGCAGAATTCACAAACCTCCAAACCATCCCATGGCAGAAGCCGTTGCAACCGTTGCAATTAGAAAAATCAAAAGACGCGTTGAACCGATCATCTTCAGTGCTAGAACAAAAACTTCGGATAGTTCAATAGTTTTATATAGGAAGTGTCACCCCTCGAAACCTCTAAAAATGTTTAATGTTCAAGCGCTTTGCATCCA</canonical>
            <polymorphic>TGTAGTAATAAGGAATAAATTATATAATAAATAGCATTTGCATCAAAATTTTATTCCAAATTAGCTTAAAACTTAAGCATCAGGATCAACAACTTTCCTTGGAGGTTTTGGAGTTCCAACTGTTTGGAAGTCAAAGTCGCCATCAGAAGGAATATTCGAAGGTGCAAGAGCGGTATCCGGAGCGTGAGCAGCATCGATTTTAACGGTAGCATACAGAGCAGGTCCGGCTCCACCAACTGGGAAGGGAGTGTTTGGAGGTGTTGGGCTTCTAATCCAGAATGTCGTGCTAGACTCAATTTTATCACCGCCATCAGACTCATCCATAGCGACAGGAACTTCTTCTCCTCTAAGGAATGTTCCTTCTGGCTTTGTCGGAATTGGAGTGGGAGGTGTGGTTGTCGTTGATGGAGTTGTGGTAGTAGACAAGCTGGGCGGAATTTTGGTAGTAGTAGTTGTTGAGGTGGAAGTCGATGTGGATGTTGAAGTGGATGTTGTCGTCRGTGGAGAAGATTGTGTTGCAGGATGAGTTGGAGTTGTAGAAGGAGTTGTTGTTGCAATTGTCGACGAAATTGCCGTTGACGAAGGAGTGGTTGCCGCATGCGTCGTGGATGCAGCAGTTGGTTTTGGCTTACATTTACAAGGACATCTGCACTTGAACTTGAACCCTTCTGGTTCTTGTGGGAAATCTTCTGGCCAGTCTCCTTCACATCCTTCCGAATGGCCACCACCACCACCACCTGAAGCTAGGAAAAATGAAAACTTGACGTTTCCCTGAGTTCCCTGAATAGTCTTATCAAAAGCAAAGCAGAATTCACAAACCTCCAAACCATCCCATGGCAGAAGCCGTTGCAACCGTTGCAATTAGAAAAATCAAAAGACGCGTTGAACCGATCATCTTCAGTGCTAGAACAAAAACTTCGGATAGTTCAATAGTTTTATATAGGAAGTGTCACCCCTCGAAACCTCTAAAAATGTTTAATGTTCAAGCGCTTTGCATCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>500 395 66 39</canonical_bands>
                <polymorphic_bands>566 395 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGATGGAGTTGTGGTAGTAGA</pcr_primer_p1>
		<pcr_primer_p2>GCAGATGTCCTTGTAAATGTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTGATGGAGTTGTGGTAGTAGACAAGCTGGGCGGAATTTTGGTAGTAGTAGTTGTTGAGGTGGAAGTCGATGTGGATGTTGAAGTGGATGTTGTCGTCGGTGGAGAAGATTGTGTTGCAGGATGAGTTGGAGTTGTAGAAGGAGTTGTTGTTGCAATTGTCGACGAAATTGCCGTTGACGAAGGAGTGGTTGCCGCATGCGTCGTGGATGCAGCAGTTGGTTTTGGCTTACATTTACAAGGACATCTGC</canonical_amplicon>
		<polymorphic_amplicon>GTTGATGGAGTTGTGGTAGTAGACAAGCTGGGCGGAATTTTGGTAGTAGTAGTTGTTGAGGTGGAAGTCGATGTGGATGTTGAAGTGGATGTTGTCGTCRGTGGAGAAGATTGTGTTGCAGGATGAGTTGGAGTTGTAGAAGGAGTTGTTGTTGCAATTGTCGACGAAATTGCCGTTGACGAAGGAGTGGTTGCCGCATGCGTCGTGGATGCAGCAGTTGGTTTTGGCTTACATTTACAAGGACATCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30603</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>296260</contig_pos>
        <strand>+</strand>
        <context>CGTCRGTGGA[A/G]AAGATTGTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAGGTGGAAGTCGATGTGGATGTTGAAGTGGATGTTGTCGTCGGTGGA</left_flank>
        <right_flank>AAGATTGTGTTGCAGGATGAGTTGGAGTTGTAGAAGGAGTTGTTGTTGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAAGGAATAAATTATATAATAAATAGCATTTGCATCAAAATTTTATTCCAAATTAGCTTAAAACTTAAGCATCAGGATCAACAACTTTCCTTGGAGGTTTTGGAGTTCCAACTGTTTGGAAGTCAAAGTCGCCATCAGAAGGAATATTCGAAGGTGCAAGAGCGGTATCCGGAGCGTGAGCAGCATCGATTTTAACGGTAGCATACAGAGCAGGTCCGGCTCCACCAACTGGGAAGGGAGTGTTTGGAGGTGTTGGGCTTCTAATCCAGAATGTCGTGCTAGACTCAATTTTATCACCGCCATCAGACTCATCCATAGCGACAGGAACTTCTTCTCCTCTAAGGAATGTTCCTTCTGGCTTTGTCGGAATTGGAGTGGGAGGTGTGGTTGTCGTTGATGGAGTTGTGGTAGTAGACAAGCTGGGCGGAATTTTGGTAGTAGTAGTTGTTGAGGTGGAAGTCGATGTGGATGTTGAAGTGGATGTTGTCGTCGGTGGAGAAGATTGTGTTGCAGGATGAGTTGGAGTTGTAGAAGGAGTTGTTGTTGCAATTGTCGACGAAATTGCCGTTGACGAAGGAGTGGTTGCCGCATGCGTCGTGGATGCAGCAGTTGGTTTTGGCTTACATTTACAAGGACATCTGCACTTGAACTTGAACCCTTCTGGTTCTTGTGGGAAATCTTCTGGCCAGTCTCCTTCACATCCTTCCGAATGGCCACCACCACCACCACCTGAAGCTAGGAAAAATGAAAACTTGACGTTTCCCTGAGTTCCCTGAATAGTCTTATCAAAAGCAAAGCAGAATTCACAAACCTCCAAACCATCCCATGGCAGAAGCCGTTGCAACCGTTGCAATTAGAAAAATCAAAAGACGCGTTGAACCGATCATCTTCAGTGCTAGAACAAAAACTTCGGATAGTTCAATAGTTTTATATAGGAAGTGTCACCCCTCGAAACCTCTAAAAATGTTTAATGTTCAAGCGCTTTGCATCCATTTTTA</canonical>
            <polymorphic>AATAAGGAATAAATTATATAATAAATAGCATTTGCATCAAAATTTTATTCCAAATTAGCTTAAAACTTAAGCATCAGGATCAACAACTTTCCTTGGAGGTTTTGGAGTTCCAACTGTTTGGAAGTCAAAGTCGCCATCAGAAGGAATATTCGAAGGTGCAAGAGCGGTATCCGGAGCGTGAGCAGCATCGATTTTAACGGTAGCATACAGAGCAGGTCCGGCTCCACCAACTGGGAAGGGAGTGTTTGGAGGTGTTGGGCTTCTAATCCAGAATGTCGTGCTAGACTCAATTTTATCACCGCCATCAGACTCATCCATAGCGACAGGAACTTCTTCTCCTCTAAGGAATGTTCCTTCTGGCTTTGTCGGAATTGGAGTGGGAGGTGTGGTTGTCGTTGATGGAGTTGTGGTAGTAGACAAGCTGGGCGGAATTTTGGTAGTAGTAGTTGTTGAGGTGGAAGTCGATGTGGATGTTGAAGTGGATGTTGTCGTCGGTGGARAAGATTGTGTTGCAGGATGAGTTGGAGTTGTAGAAGGAGTTGTTGTTGCAATTGTCGACGAAATTGCCGTTGACGAAGGAGTGGTTGCCGCATGCGTCGTGGATGCAGCAGTTGGTTTTGGCTTACATTTACAAGGACATCTGCACTTGAACTTGAACCCTTCTGGTTCTTGTGGGAAATCTTCTGGCCAGTCTCCTTCACATCCTTCCGAATGGCCACCACCACCACCACCTGAAGCTAGGAAAAATGAAAACTTGACGTTTCCCTGAGTTCCCTGAATAGTCTTATCAAAAGCAAAGCAGAATTCACAAACCTCCAAACCATCCCATGGCAGAAGCCGTTGCAACCGTTGCAATTAGAAAAATCAAAAGACGCGTTGAACCGATCATCTTCAGTGCTAGAACAAAAACTTCGGATAGTTCAATAGTTTTATATAGGAAGTGTCACCCCTCGAAACCTCTAAAAATGTTTAATGTTCAAGCGCTTTGCATCCATTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGATGGAGTTGTGGTAGTAGA</pcr_primer_p1>
		<pcr_primer_p2>GCAGATGTCCTTGTAAATGTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTGATGGAGTTGTGGTAGTAGACAAGCTGGGCGGAATTTTGGTAGTAGTAGTTGTTGAGGTGGAAGTCGATGTGGATGTTGAAGTGGATGTTGTCGTCGGTGGAGAAGATTGTGTTGCAGGATGAGTTGGAGTTGTAGAAGGAGTTGTTGTTGCAATTGTCGACGAAATTGCCGTTGACGAAGGAGTGGTTGCCGCATGCGTCGTGGATGCAGCAGTTGGTTTTGGCTTACATTTACAAGGACATCTGC</canonical_amplicon>
		<polymorphic_amplicon>GTTGATGGAGTTGTGGTAGTAGACAAGCTGGGCGGAATTTTGGTAGTAGTAGTTGTTGAGGTGGAAGTCGATGTGGATGTTGAAGTGGATGTTGTCGTCGGTGGARAAGATTGTGTTGCAGGATGAGTTGGAGTTGTAGAAGGAGTTGTTGTTGCAATTGTCGACGAAATTGCCGTTGACGAAGGAGTGGTTGCCGCATGCGTCGTGGATGCAGCAGTTGGTTTTGGCTTACATTTACAAGGACATCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30604</snp_id>
        <super_contig>c005500743.Contig5</super_contig>
        <contig_pos>301920</contig_pos>
        <strand>+</strand>
        <context>CAAAGTACTG[A/G]TGATCTCTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCTATCCCATTATGACCTTTGTTGGAAGGATACGGTAGCCAAAGTACTG</left_flank>
        <right_flank>TGATCTCTGAATTTTTTTTGATTTTTCGAATTTCAGATAAACTAGCCCGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCCGAGCTTGCTGCTTAATGTACTTATTAAGATAAGGATTCAAATAAGTGAGCGACTGAGAATTGAAGAGCAAACTGATGCTCACGATTCTTGTAAAAGTATGGAAATTTTTCAAAAGTGCCTGACTTCCTTAAAGATCACGGTAGATCCACGAGCTTTTACGGTAGATCCACGAGCTCTCAAGGTAGACCCACAAAGATTACGGTAGATCCTAAAACATTCAGCATTAGCTCTTGAAAATCTATAAAATCCTCCTCAACTTTCTGAAAATATTTTCAGATCCATTTCTCCTGTCGCTTTTGATCCTTCAGGCAACGATTCACCTTTACCTAACCTTTATCTTTCAAAACCCCAAGAATTTGATTCCCTCCGTTCCCTCTAAAATTTCGGTCCCCCAAATTTTCCTCCCTAAATTTTTCCTCAAATTTTTTCTCTGTTTTTCTCGAAAGCCTATCCCATTATGACCTTTGTTGGAAGGATACGGTAGCCAAAGTACTGGTGATCTCTGAATTTTTTTTGATTTTTCGAATTTCAGATAAACTAGCCCGTTGTTTGCAGTAAGAATGAACGACCCAAACCTTAAACACTTTAGTAGGACGCCTCCCAAACCGTCAACTTTGAAATTATACATCTCATTTCCTGTAAAAGATAAAAGTATTTTATCAGTTGACCACATTTTGATATATTCTACAGGAACCAAGATAAACTGGTTCAACGTTGAAAGGTAGGAGGTGGCGTTCTATTAGAAGGTTTACGGTAGGTGCCAGTTTCGGTAGGTGAGTTTTAGACTGGGCACCTTCAAACATTTAGCTCAAGATATCTCAATCTATGGCAATTGTTTCTCCTTCATTGTAGGTTCCAATTAGTCTTAGAATTTTCCAAATCTTGAATCTACCCATCTCCATTCCCCATCCCTGGTCTCCAATTTCATTTTCGAACGCCCTTGACCATTGAGACACGAACACATTTTATAGTTCATTCATTTGAAAAAGAACAGTT</canonical>
            <polymorphic>GCCCGAGCTTGCTGCTTAATGTACTTATTAAGATAAGGATTCAAATAAGTGAGCGACTGAGAATTGAAGAGCAAACTGATGCTCACGATTCTTGTAAAAGTATGGAAATTTTTCAAAAGTGCCTGACTTCCTTAAAGATCACGGTAGATCCACGAGCTTTTACGGTAGATCCACGAGCTCTCAAGGTAGACCCACAAAGATTACGGTAGATCCTAAAACATTCAGCATTAGCTCTTGAAAATCTATAAAATCCTCCTCAACTTTCTGAAAATATTTTCAGATCCATTTCTCCTGTCGCTTTTGATCCTTCAGGCAACGATTCACCTTTACCTAACCTTTATCTTTCAAAACCCCAAGAATTTGATTCCCTCCGTTCCCTCTAAAATTTCGGTCCCCCAAATTTTCCTCCCTAAATTTTTCCTCAAATTTTTTCTCTGTTTTTCTCGAAAGCCTATCCCATTATGACCTTTGTTGGAAGGATACGGTAGCCAAAGTACTGRTGATCTCTGAATTTTTTTTGATTTTTCGAATTTCAGATAAACTAGCCCGTTGTTTGCAGTAAGAATGAACGACCCAAACCTTAAACACTTTAGTAGGACGCCTCCCAAACCGTCAACTTTGAAATTATACATCTCATTTCCTGTAAAAGATAAAAGTATTTTATCAGTTGACCACATTTTGATATATTCTACAGGAACCAAGATAAACTGGTTCAACGTTGAAAGGTAGGAGGTGGCGTTCTATTAGAAGGTTTACGGTAGGTGCCAGTTTCGGTAGGTGAGTTTTAGACTGGGCACCTTCAAACATTTAGCTCAAGATATCTCAATCTATGGCAATTGTTTCTCCTTCATTGTAGGTTCCAATTAGTCTTAGAATTTTCCAAATCTTGAATCTACCCATCTCCATTCCCCATCCCTGGTCTCCAATTTCATTTTCGAACGCCCTTGACCATTGAGACACGAACACATTTTATAGTTCATTCATTTGAAAAAGAACAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>BstXI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>179 163 129 87 85 61 51 36 35 34 29 21 21 20 16 16 11 6</canonical_bands>
                <polymorphic_bands>264 163 129 87 61 51 36 35 34 29 21 21 20 16 16 11 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTTACCTAACCTTTATCTTTCA</pcr_primer_p1>
		<pcr_primer_p2>TCGTTCATTCTTACTGCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCTTTACCTAACCTTTATCTTTCAAAACCCCAAGAATTTGATTCCCTCCGTTCCCTCTAAAATTTCGGTCCCCCAAATTTTCCTCCCTAAATTTTTCCTCAAATTTTTTCTCTGTTTTTCTCGAAAGCCTATCCCATTATGACCTTTGTTGGAAGGATACGGTAGCCAAAGTACTGGTGATCTCTGAATTTTTTTTGATTTTTCGAATTTCAGATAAACTAGCCCGTTGTTTGCAGTAAGAATGAACGA</canonical_amplicon>
		<polymorphic_amplicon>CCTTTACCTAACCTTTATCTTTCAAAACCCCAAGAATTTGATTCCCTCCGTTCCCTCTAAAATTTCGGTCCCCCAAATTTTCCTCCCTAAATTTTTCCTCAAATTTTTTCTCTGTTTTTCTCGAAAGCCTATCCCATTATGACCTTTGTTGGAAGGATACGGTAGCCAAAGTACTGRTGATCTCTGAATTTTTTTTGATTTTTCGAATTTCAGATAAACTAGCCCGTTGTTTGCAGTAAGAATGAACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30605</snp_id>
        <super_contig>c005500756.Contig1</super_contig>
        <contig_pos>3144</contig_pos>
        <strand></strand>
        <context>ttcatgtaga[T/C]tcccataaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGA</left_flank>
        <right_flank>TCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGTTTTAATGCAATACAAATTTTTGGTCGGAGTCCCCCTTTAAAACAAAGTTTTTAGGGAAACGGCAAGAAAAATAGTTTAGAAAACAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCACCTTCAAATTCCGGCCAAAATCCGATCATTGTCCGTCCCACTGCTGCGGTGGGCAGCTTCTGACCCAAAGCTGACCAAGATCCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAATTGCAAGCCGACAGCCGAGTTGTAAATCTTTTTCCTAATTTTTAGGTTAAAAAAGCGCAAAATAAGTGAAAATATACAATTTCGAGTTCGTTTTGAATTCATAATTCCTCTTTTTTTTTCATATTTTTTCTGACTAATTTTCGCGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTT</canonical>
            <polymorphic>CATGTTTTAATGCAATACAAATTTTTGGTCGGAGTCCCCCTTTAAAACAAAGTTTTTAGGGAAACGGCAAGAAAAATAGTTTAGAAAACAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCACCTTCAAATTCCGGCCAAAATCCGATCATTGTCCGTCCCACTGCTGCGGTGGGCAGCTTCTGACCCAAAGCTGACCAAGATCCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAATTGCAAGCCGACAGCCGAGTTGTAAATCTTTTTCCTAATTTTTAGGTTAAAAAAGCGCAAAATAAGTGAAAATATACAATTTCGAGTTCGTTTTGAATTCATAATTCCTCTTTTTTTTTCATATTTTTTCTGACTAATTTTCGCGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGAYTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATATCTTTCGCAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATGACCCAAAAATTTGTCTA</pcr_primer_p2>
		<pcr_amplicon_size>518</pcr_amplicon_size>
		<canonical_amplicon>CGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTT</canonical_amplicon>
		<polymorphic_amplicon>CGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGAYTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30606</snp_id>
        <super_contig>c005500756.Contig1</super_contig>
        <contig_pos>3157</contig_pos>
        <strand></strand>
        <context>ccataaaaat[G/A]aagaaaaaat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAAT</left_flank>
        <right_flank>AAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATACAAATTTTTGGTCGGAGTCCCCCTTTAAAACAAAGTTTTTAGGGAAACGGCAAGAAAAATAGTTTAGAAAACAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCACCTTCAAATTCCGGCCAAAATCCGATCATTGTCCGTCCCACTGCTGCGGTGGGCAGCTTCTGACCCAAAGCTGACCAAGATCCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAATTGCAAGCCGACAGCCGAGTTGTAAATCTTTTTCCTAATTTTTAGGTTAAAAAAGCGCAAAATAAGTGAAAATATACAATTTCGAGTTCGTTTTGAATTCATAATTCCTCTTTTTTTTTCATATTTTTTCTGACTAATTTTCGCGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCC</canonical>
            <polymorphic>AATACAAATTTTTGGTCGGAGTCCCCCTTTAAAACAAAGTTTTTAGGGAAACGGCAAGAAAAATAGTTTAGAAAACAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCACCTTCAAATTCCGGCCAAAATCCGATCATTGTCCGTCCCACTGCTGCGGTGGGCAGCTTCTGACCCAAAGCTGACCAAGATCCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAATTGCAAGCCGACAGCCGAGTTGTAAATCTTTTTCCTAATTTTTAGGTTAAAAAAGCGCAAAATAAGTGAAAATATACAATTTCGAGTTCGTTTTGAATTCATAATTCCTCTTTTTTTTTCATATTTTTTCTGACTAATTTTCGCGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATRAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATATCTTTCGCAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATGACCCAAAAATTTGTCTA</pcr_primer_p2>
		<pcr_amplicon_size>518</pcr_amplicon_size>
		<canonical_amplicon>CGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTT</canonical_amplicon>
		<polymorphic_amplicon>CGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATRAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30607</snp_id>
        <super_contig>c005500756.Contig1</super_contig>
        <contig_pos>3287</contig_pos>
        <strand></strand>
        <context>cgaaattcga[A/T]tttttattga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGA</left_flank>
        <right_flank>TTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCCAAAATCCGATCATTGTCCGTCCCACTGCTGCGGTGGGCAGCTTCTGACCCAAAGCTGACCAAGATCCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAATTGCAAGCCGACAGCCGAGTTGTAAATCTTTTTCCTAATTTTTAGGTTAAAAAAGCGCAAAATAAGTGAAAATATACAATTTCGAGTTCGTTTTGAATTCATAATTCCTCTTTTTTTTTCATATTTTTTCTGACTAATTTTCGCGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCGAC</canonical>
            <polymorphic>GGCCAAAATCCGATCATTGTCCGTCCCACTGCTGCGGTGGGCAGCTTCTGACCCAAAGCTGACCAAGATCCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAATTGCAAGCCGACAGCCGAGTTGTAAATCTTTTTCCTAATTTTTAGGTTAAAAAAGCGCAAAATAAGTGAAAATATACAATTTCGAGTTCGTTTTGAATTCATAATTCCTCTTTTTTTTTCATATTTTTTCTGACTAATTTTCGCGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAWTTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>203 144 116 104 93 83 71 44 34 33 26 22 11 10 6</canonical_bands>
                <polymorphic_bands>203 144 122 104 93 83 71 44 34 33 26 22 11 10</polymorphic_bands>
            </assay>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>407 381 115 97</canonical_bands>
                <polymorphic_bands>522 381 97</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>117 106 104 62 54 46 44 42 41 39 38 34 33 33 32 31 26 22 21 18 11 10 9 8 7 6 6</canonical_bands>
                <polymorphic_bands>117 106 104 68 54 46 44 42 41 39 38 34 33 33 32 31 26 22 21 18 11 10 9 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATATCTTTCGCAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATGACCCAAAAATTTGTCTA</pcr_primer_p2>
		<pcr_amplicon_size>518</pcr_amplicon_size>
		<canonical_amplicon>CGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTT</canonical_amplicon>
		<polymorphic_amplicon>CGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAWTTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30608</snp_id>
        <super_contig>c005500756.Contig1</super_contig>
        <contig_pos>3324</contig_pos>
        <strand></strand>
        <context>tgatggtttt[T/C]aaagatttca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTT</left_flank>
        <right_flank>AAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGGCAGCTTCTGACCCAAAGCTGACCAAGATCCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAATTGCAAGCCGACAGCCGAGTTGTAAATCTTTTTCCTAATTTTTAGGTTAAAAAAGCGCAAAATAAGTGAAAATATACAATTTCGAGTTCGTTTTGAATTCATAATTCCTCTTTTTTTTTCATATTTTTTCTGACTAATTTTCGCGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCGACACGTTTTCTCTTTTTCAGCGACCTCTCCGCTATCTGC</canonical>
            <polymorphic>TGGGCAGCTTCTGACCCAAAGCTGACCAAGATCCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAATTGCAAGCCGACAGCCGAGTTGTAAATCTTTTTCCTAATTTTTAGGTTAAAAAAGCGCAAAATAAGTGAAAATATACAATTTCGAGTTCGTTTTGAATTCATAATTCCTCTTTTTTTTTCATATTTTTTCTGACTAATTTTCGCGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTYAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCGACACGTTTTCTCTTTTTCAGCGACCTCTCCGCTATCTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 310 190</canonical_bands>
                <polymorphic_bands>690 310</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>381 299 118 114 53 23 12</canonical_bands>
                <polymorphic_bands>404 299 118 114 53 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATATCTTTCGCAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATGACCCAAAAATTTGTCTA</pcr_primer_p2>
		<pcr_amplicon_size>518</pcr_amplicon_size>
		<canonical_amplicon>CGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTT</canonical_amplicon>
		<polymorphic_amplicon>CGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTYAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30609</snp_id>
        <super_contig>c005500756.Contig1</super_contig>
        <contig_pos>3405</contig_pos>
        <strand></strand>
        <context>ttttttgaat[T/G]ttttcgttat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAAT</left_flank>
        <right_flank>TTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGCCGAGTTGTAAATCTTTTTCCTAATTTTTAGGTTAAAAAAGCGCAAAATAAGTGAAAATATACAATTTCGAGTTCGTTTTGAATTCATAATTCCTCTTTTTTTTTCATATTTTTTCTGACTAATTTTCGCGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCGACACGTTTTCTCTTTTTCAGCGACCTCTCCGCTATCTGCGGCAGGGAGGAGCATGTGACTGTGATTGCCTAGAAAATGCAAAAAGCAGAAATTCGGCCATATATTTAAGAGCTACGTTTT</canonical>
            <polymorphic>ACAGCCGAGTTGTAAATCTTTTTCCTAATTTTTAGGTTAAAAAAGCGCAAAATAAGTGAAAATATACAATTTCGAGTTCGTTTTGAATTCATAATTCCTCTTTTTTTTTCATATTTTTTCTGACTAATTTTCGCGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATKTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCGACACGTTTTCTCTTTTTCAGCGACCTCTCCGCTATCTGCGGCAGGGAGGAGCATGTGACTGTGATTGCCTAGAAAATGCAAAAAGCAGAAATTCGGCCATATATTTAAGAGCTACGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>180 144 116 104 85 83 71 44 34 33 31 26 22 11 10 6</canonical_bands>
                <polymorphic_bands>180 150 144 104 85 83 71 44 33 31 26 22 11 10 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>117 104 95 62 54 46 44 42 41 39 34 33 33 32 31 31 26 26 22 21 18 11 10 9 7 6 6</canonical_bands>
                <polymorphic_bands>117 104 95 88 62 46 44 42 41 39 33 33 32 31 31 26 26 22 21 18 11 10 9 7 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATATCTTTCGCAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATGACCCAAAAATTTGTCTA</pcr_primer_p2>
		<pcr_amplicon_size>518</pcr_amplicon_size>
		<canonical_amplicon>CGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTT</canonical_amplicon>
		<polymorphic_amplicon>CGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATKTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30610</snp_id>
        <super_contig>c005500756.Contig1</super_contig>
        <contig_pos>3433</contig_pos>
        <strand></strand>
        <context>gggatctaca[T/A]ggaattctgc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACA</left_flank>
        <right_flank>GGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTAGGTTAAAAAAGCGCAAAATAAGTGAAAATATACAATTTCGAGTTCGTTTTGAATTCATAATTCCTCTTTTTTTTTCATATTTTTTCTGACTAATTTTCGCGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCGACACGTTTTCTCTTTTTCAGCGACCTCTCCGCTATCTGCGGCAGGGAGGAGCATGTGACTGTGATTGCCTAGAAAATGCAAAAAGCAGAAATTCGGCCATATATTTAAGAGCTACGTTTTCGAGCCACAATTTTCTAAAGATCGAAAA</canonical>
            <polymorphic>TTTTTAGGTTAAAAAAGCGCAAAATAAGTGAAAATATACAATTTCGAGTTCGTTTTGAATTCATAATTCCTCTTTTTTTTTCATATTTTTTCTGACTAATTTTCGCGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACAWGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCGACACGTTTTCTCTTTTTCAGCGACCTCTCCGCTATCTGCGGCAGGGAGGAGCATGTGACTGTGATTGCCTAGAAAATGCAAAAAGCAGAAATTCGGCCATATATTTAAGAGCTACGTTTTCGAGCCACAATTTTCTAAAGATCGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>295 213 203 193 96</canonical_bands>
                <polymorphic_bands>488 213 203 96</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATATCTTTCGCAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATGACCCAAAAATTTGTCTA</pcr_primer_p2>
		<pcr_amplicon_size>518</pcr_amplicon_size>
		<canonical_amplicon>CGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTT</canonical_amplicon>
		<polymorphic_amplicon>CGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACAWGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30611</snp_id>
        <super_contig>c005500756.Contig1</super_contig>
        <contig_pos>3477</contig_pos>
        <strand></strand>
        <context>TATTTTTGAG[T/C]AATTTTTGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAG</left_flank>
        <right_flank>AATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGTTCGTTTTGAATTCATAATTCCTCTTTTTTTTTCATATTTTTTCTGACTAATTTTCGCGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCGACACGTTTTCTCTTTTTCAGCGACCTCTCCGCTATCTGCGGCAGGGAGGAGCATGTGACTGTGATTGCCTAGAAAATGCAAAAAGCAGAAATTCGGCCATATATTTAAGAGCTACGTTTTCGAGCCACAATTTTCTAAAGATCGAAAAAAAAATTCAACAAAATAGTTGTTTGTTTTTTTTTTTGGATTTCT</canonical>
            <polymorphic>CGAGTTCGTTTTGAATTCATAATTCCTCTTTTTTTTTCATATTTTTTCTGACTAATTTTCGCGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGYAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCGACACGTTTTCTCTTTTTCAGCGACCTCTCCGCTATCTGCGGCAGGGAGGAGCATGTGACTGTGATTGCCTAGAAAATGCAAAAAGCAGAAATTCGGCCATATATTTAAGAGCTACGTTTTCGAGCCACAATTTTCTAAAGATCGAAAAAAAAATTCAACAAAATAGTTGTTTGTTTTTTTTTTTGGATTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATATCTTTCGCAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATGACCCAAAAATTTGTCTA</pcr_primer_p2>
		<pcr_amplicon_size>518</pcr_amplicon_size>
		<canonical_amplicon>CGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTT</canonical_amplicon>
		<polymorphic_amplicon>CGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGYAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30612</snp_id>
        <super_contig>c005500756.Contig1</super_contig>
        <contig_pos>3506</contig_pos>
        <strand></strand>
        <context>AAATGGTTTT[G/T]GTCAATTTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTT</left_flank>
        <right_flank>GTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTTCATATTTTTTCTGACTAATTTTCGCGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCGACACGTTTTCTCTTTTTCAGCGACCTCTCCGCTATCTGCGGCAGGGAGGAGCATGTGACTGTGATTGCCTAGAAAATGCAAAAAGCAGAAATTCGGCCATATATTTAAGAGCTACGTTTTCGAGCCACAATTTTCTAAAGATCGAAAAAAAAATTCAACAAAATAGTTGTTTGTTTTTTTTTTTGGATTTCTAGGCCAAGGAATCTACTAAAAATTTCAAA</canonical>
            <polymorphic>TTTTTTTTCATATTTTTTCTGACTAATTTTCGCGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTKGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCGACACGTTTTCTCTTTTTCAGCGACCTCTCCGCTATCTGCGGCAGGGAGGAGCATGTGACTGTGATTGCCTAGAAAATGCAAAAAGCAGAAATTCGGCCATATATTTAAGAGCTACGTTTTCGAGCCACAATTTTCTAAAGATCGAAAAAAAAATTCAACAAAATAGTTGTTTGTTTTTTTTTTTGGATTTCTAGGCCAAGGAATCTACTAAAAATTTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATATCTTTCGCAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTCAATTTTCAGGTTTAGG</pcr_primer_p2>
		<pcr_amplicon_size>651</pcr_amplicon_size>
		<canonical_amplicon>CGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTT</canonical_amplicon>
		<polymorphic_amplicon>CGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTKGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30613</snp_id>
        <super_contig>c005500756.Contig1</super_contig>
        <contig_pos>3518</contig_pos>
        <strand></strand>
        <context>TCAATTTAAA[G/T]AATTTTTTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAA</left_flank>
        <right_flank>AATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTCTGACTAATTTTCGCGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCGACACGTTTTCTCTTTTTCAGCGACCTCTCCGCTATCTGCGGCAGGGAGGAGCATGTGACTGTGATTGCCTAGAAAATGCAAAAAGCAGAAATTCGGCCATATATTTAAGAGCTACGTTTTCGAGCCACAATTTTCTAAAGATCGAAAAAAAAATTCAACAAAATAGTTGTTTGTTTTTTTTTTTGGATTTCTAGGCCAAGGAATCTACTAAAAATTTCAAAAAAAATCGAAAA</canonical>
            <polymorphic>TTTTTTCTGACTAATTTTCGCGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAKAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCGACACGTTTTCTCTTTTTCAGCGACCTCTCCGCTATCTGCGGCAGGGAGGAGCATGTGACTGTGATTGCCTAGAAAATGCAAAAAGCAGAAATTCGGCCATATATTTAAGAGCTACGTTTTCGAGCCACAATTTTCTAAAGATCGAAAAAAAAATTCAACAAAATAGTTGTTTGTTTTTTTTTTTGGATTTCTAGGCCAAGGAATCTACTAAAAATTTCAAAAAAAATCGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>180 144 116 104 83 62 61 44 43 34 33 26 22 21 11 10 6</canonical_bands>
                <polymorphic_bands>180 144 116 105 104 62 61 44 43 34 33 26 21 11 10 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATATCTTTCGCAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTCAATTTTCAGGTTTAGG</pcr_primer_p2>
		<pcr_amplicon_size>651</pcr_amplicon_size>
		<canonical_amplicon>CGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTT</canonical_amplicon>
		<polymorphic_amplicon>CGATATCTTTCGCAGTTTTTTTGAATTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAKAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30614</snp_id>
        <super_contig>c005500756.Contig1</super_contig>
        <contig_pos>3563</contig_pos>
        <strand></strand>
        <context>ATTTTGAACC[A/T]YTTTTTGAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACC</left_flank>
        <right_flank>CTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCGACACGTTTTCTCTTTTTCAGCGACCTCTCCGCTATCTGCGGCAGGGAGGAGCATGTGACTGTGATTGCCTAGAAAATGCAAAAAGCAGAAATTCGGCCATATATTTAAGAGCTACGTTTTCGAGCCACAATTTTCTAAAGATCGAAAAAAAAATTCAACAAAATAGTTGTTTGTTTTTTTTTTTGGATTTCTAGGCCAAGGAATCTACTAAAAATTTCAAAAAAAATCGAAAAAAATAAGATTTTCTCGCGTTCTTTGCCTTTTCTTCCTCACTCGGA</canonical>
            <polymorphic>TTTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCWCTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCGACACGTTTTCTCTTTTTCAGCGACCTCTCCGCTATCTGCGGCAGGGAGGAGCATGTGACTGTGATTGCCTAGAAAATGCAAAAAGCAGAAATTCGGCCATATATTTAAGAGCTACGTTTTCGAGCCACAATTTTCTAAAGATCGAAAAAAAAATTCAACAAAATAGTTGTTTGTTTTTTTTTTTGGATTTCTAGGCCAAGGAATCTACTAAAAATTTCAAAAAAAATCGAAAAAAATAAGATTTTCTCGCGTTCTTTGCCTTTTCTTCCTCACTCGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>145 141 107 89 81 64 62 60 57 54 34 25 24 16 10 9 6 6 5 3 2</canonical_bands>
                <polymorphic_bands>167 145 141 89 81 64 62 57 54 34 25 24 16 10 9 6 6 5 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATATCTTTCGCAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTCAATTTTCAGGTTTAGG</pcr_primer_p2>
		<pcr_amplicon_size>651</pcr_amplicon_size>
		<canonical_amplicon>CACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTT</canonical_amplicon>
		<polymorphic_amplicon>CWCTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30615</snp_id>
        <super_contig>c005500756.Contig1</super_contig>
        <contig_pos>3564</contig_pos>
        <strand></strand>
        <context>TTTTGAACCW[C/T]TTTTTGAGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCA</left_flank>
        <right_flank>TTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCGACACGTTTTCTCTTTTTCAGCGACCTCTCCGCTATCTGCGGCAGGGAGGAGCATGTGACTGTGATTGCCTAGAAAATGCAAAAAGCAGAAATTCGGCCATATATTTAAGAGCTACGTTTTCGAGCCACAATTTTCTAAAGATCGAAAAAAAAATTCAACAAAATAGTTGTTTGTTTTTTTTTTTGGATTTCTAGGCCAAGGAATCTACTAAAAATTTCAAAAAAAATCGAAAAAAATAAGATTTTCTCGCGTTCTTTGCCTTTTCTTCCTCACTCGGAG</canonical>
            <polymorphic>TTTTGAGATATTTTTGATTTTCTAAAATAGGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCAYTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCGACACGTTTTCTCTTTTTCAGCGACCTCTCCGCTATCTGCGGCAGGGAGGAGCATGTGACTGTGATTGCCTAGAAAATGCAAAAAGCAGAAATTCGGCCATATATTTAAGAGCTACGTTTTCGAGCCACAATTTTCTAAAGATCGAAAAAAAAATTCAACAAAATAGTTGTTTGTTTTTTTTTTTGGATTTCTAGGCCAAGGAATCTACTAAAAATTTCAAAAAAAATCGAAAAAAATAAGATTTTCTCGCGTTCTTTGCCTTTTCTTCCTCACTCGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>145 141 107 89 81 64 62 60 57 54 33 25 24 16 10 9 7 6 5 3 2</canonical_bands>
                <polymorphic_bands>167 145 141 89 81 64 62 57 54 33 25 24 16 10 9 7 6 5 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATATCTTTCGCAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTCAATTTTCAGGTTTAGG</pcr_primer_p2>
		<pcr_amplicon_size>651</pcr_amplicon_size>
		<canonical_amplicon>ACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTT</canonical_amplicon>
		<polymorphic_amplicon>AYTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30616</snp_id>
        <super_contig>c005500756.Contig1</super_contig>
        <contig_pos>3597</contig_pos>
        <strand></strand>
        <context>TTTTTCCCTT[A/T]TTTTCGACTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTT</left_flank>
        <right_flank>TTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCGACACGTTTTCTCTTTTTCAGCGACCTCTCCGCTATCTGCGGCAGGGAGGAGCATGTGACTGTGATTGCCTAGAAAATGCAAAAAGCAGAAATTCGGCCATATATTTAAGAGCTACGTTTTCGAGCCACAATTTTCTAAAGATCGAAAAAAAAATTCAACAAAATAGTTGTTTGTTTTTTTTTTTGGATTTCTAGGCCAAGGAATCTACTAAAAATTTCAAAAAAAATCGAAAAAAATAAGATTTTCTCGCGTTCTTTGCCTTTTCTTCCTCACTCGGAGCCCATGGCCTAGAAATCCGCAAAACCTCTTCCA</canonical>
            <polymorphic>CGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTWTTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCGACACGTTTTCTCTTTTTCAGCGACCTCTCCGCTATCTGCGGCAGGGAGGAGCATGTGACTGTGATTGCCTAGAAAATGCAAAAAGCAGAAATTCGGCCATATATTTAAGAGCTACGTTTTCGAGCCACAATTTTCTAAAGATCGAAAAAAAAATTCAACAAAATAGTTGTTTGTTTTTTTTTTTGGATTTCTAGGCCAAGGAATCTACTAAAAATTTCAAAAAAAATCGAAAAAAATAAGATTTTCTCGCGTTCTTTGCCTTTTCTTCCTCACTCGGAGCCCATGGCCTAGAAATCCGCAAAACCTCTTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGACAAATTTTTGGGTCATTT</pcr_primer_p1>
		<pcr_primer_p2>CGAATTGATAAAAACTGATAACAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCG</canonical_amplicon>
		<polymorphic_amplicon>TAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTWTTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30617</snp_id>
        <super_contig>c005500756.Contig1</super_contig>
        <contig_pos>3618</contig_pos>
        <strand></strand>
        <context>TTTTCAGCCG[T/G]TTTCACATGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCG</left_flank>
        <right_flank>TTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCGACACGTTTTCTCTTTTTCAGCGACCTCTCCGCTATCTGCGGCAGGGAGGAGCATGTGACTGTGATTGCCTAGAAAATGCAAAAAGCAGAAATTCGGCCATATATTTAAGAGCTACGTTTTCGAGCCACAATTTTCTAAAGATCGAAAAAAAAATTCAACAAAATAGTTGTTTGTTTTTTTTTTTGGATTTCTAGGCCAAGGAATCTACTAAAAATTTCAAAAAAAATCGAAAAAAATAAGATTTTCTCGCGTTCTTTGCCTTTTCTTCCTCACTCGGAGCCCATGGCCTAGAAATCCGCAAAACCTCTTCCATCTCCCCTTCCCCTCCTTCCA</canonical>
            <polymorphic>TATTTTGTGCAGAAATTCATGTAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGKTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCGACACGTTTTCTCTTTTTCAGCGACCTCTCCGCTATCTGCGGCAGGGAGGAGCATGTGACTGTGATTGCCTAGAAAATGCAAAAAGCAGAAATTCGGCCATATATTTAAGAGCTACGTTTTCGAGCCACAATTTTCTAAAGATCGAAAAAAAAATTCAACAAAATAGTTGTTTGTTTTTTTTTTTGGATTTCTAGGCCAAGGAATCTACTAAAAATTTCAAAAAAAATCGAAAAAAATAAGATTTTCTCGCGTTCTTTGCCTTTTCTTCCTCACTCGGAGCCCATGGCCTAGAAATCCGCAAAACCTCTTCCATCTCCCCTTCCCCTCCTTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGACAAATTTTTGGGTCATTT</pcr_primer_p1>
		<pcr_primer_p2>CGAATTGATAAAAACTGATAACAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCG</canonical_amplicon>
		<polymorphic_amplicon>TAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGKTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30618</snp_id>
        <super_contig>c005500756.Contig1</super_contig>
        <contig_pos>3639</contig_pos>
        <strand></strand>
        <context>TTTTTTGACT[T/A]TTTTTTTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACT</left_flank>
        <right_flank>TTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCGACACGTTTTCTCTTTTTCAGCGACCTCTCCGCTATCTGCGGCAGGGAGGAGCATGTGACTGTGATTGCCTAGAAAATGCAAAAAGCAGAAATTCGGCCATATATTTAAGAGCTACGTTTTCGAGCCACAATTTTCTAAAGATCGAAAAAAAAATTCAACAAAATAGTTGTTTGTTTTTTTTTTTGGATTTCTAGGCCAAGGAATCTACTAAAAATTTCAAAAAAAATCGAAAAAAATAAGATTTTCTCGCGTTCTTTGCCTTTTCTTCCTCACTCGGAGCCCATGGCCTAGAAATCCGCAAAACCTCTTCCATCTCCCCTTCCCCTCCTTCCAATCCCTTTTAGTGTCCCCCTC</canonical>
            <polymorphic>TAGATTCCCATAAAAATGAAGAAAAAATTCGAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTWTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCGACACGTTTTCTCTTTTTCAGCGACCTCTCCGCTATCTGCGGCAGGGAGGAGCATGTGACTGTGATTGCCTAGAAAATGCAAAAAGCAGAAATTCGGCCATATATTTAAGAGCTACGTTTTCGAGCCACAATTTTCTAAAGATCGAAAAAAAAATTCAACAAAATAGTTGTTTGTTTTTTTTTTTGGATTTCTAGGCCAAGGAATCTACTAAAAATTTCAAAAAAAATCGAAAAAAATAAGATTTTCTCGCGTTCTTTGCCTTTTCTTCCTCACTCGGAGCCCATGGCCTAGAAATCCGCAAAACCTCTTCCATCTCCCCTTCCCCTCCTTCCAATCCCTTTTAGTGTCCCCCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGACAAATTTTTGGGTCATTT</pcr_primer_p1>
		<pcr_primer_p2>CGAATTGATAAAAACTGATAACAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCG</canonical_amplicon>
		<polymorphic_amplicon>TAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTWTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30619</snp_id>
        <super_contig>c005500756.Contig1</super_contig>
        <contig_pos>3705</contig_pos>
        <strand></strand>
        <context>AATTTTCGCC[T/C]AWKTTTCGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCC</left_flank>
        <right_flank>ATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCGACACGTTTTCTCTTTTTCAGCGACCTCTCCGCTATCTGCGGCAGGGAGGAGCATGTGACTGTGATTGCCTAGAAAATGCAAAAAGCAGAAATTCGGCCATATATTTAAGAGCTACGTTTTCGAGCCACAATTTTCTAAAGATCGAAAAAAAAATTCAACAAAATAGTTGTTTGTTTTTTTTTTTGGATTTCTAGGCCAAGGAATCTACTAAAAATTTCAAAAAAAATCGAAAAAAATAAGATTTTCTCGCGTTCTTTGCCTTTTCTTCCTCACTCGGAGCCCATGGCCTAGAAATCCGCAAAACCTCTTCCATCTCCCCTTCCCCTCCTTCCAATCCCTTTTAGTGTCCCCCTCCCGCCGCTTCCCCCCGCCATTGCCTTTCCGTGCAAATGTCTCTGCGTCTCTATCCCTGTCTCTCGC</canonical>
            <polymorphic>AAGTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCYATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCGACACGTTTTCTCTTTTTCAGCGACCTCTCCGCTATCTGCGGCAGGGAGGAGCATGTGACTGTGATTGCCTAGAAAATGCAAAAAGCAGAAATTCGGCCATATATTTAAGAGCTACGTTTTCGAGCCACAATTTTCTAAAGATCGAAAAAAAAATTCAACAAAATAGTTGTTTGTTTTTTTTTTTGGATTTCTAGGCCAAGGAATCTACTAAAAATTTCAAAAAAAATCGAAAAAAATAAGATTTTCTCGCGTTCTTTGCCTTTTCTTCCTCACTCGGAGCCCATGGCCTAGAAATCCGCAAAACCTCTTCCATCTCCCCTTCCCCTCCTTCCAATCCCTTTTAGTGTCCCCCTCCCGCCGCTTCCCCCCGCCATTGCCTTTCCGTGCAAATGTCTCTGCGTCTCTATCCCTGTCTCTCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGACAAATTTTTGGGTCATTT</pcr_primer_p1>
		<pcr_primer_p2>CGAATTGATAAAAACTGATAACAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCG</canonical_amplicon>
		<polymorphic_amplicon>TAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCYATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30620</snp_id>
        <super_contig>c005500756.Contig1</super_contig>
        <contig_pos>3707</contig_pos>
        <strand></strand>
        <context>TTTTCGCCYA[T/A]KTTTCGACTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTA</left_flank>
        <right_flank>GTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCGACACGTTTTCTCTTTTTCAGCGACCTCTCCGCTATCTGCGGCAGGGAGGAGCATGTGACTGTGATTGCCTAGAAAATGCAAAAAGCAGAAATTCGGCCATATATTTAAGAGCTACGTTTTCGAGCCACAATTTTCTAAAGATCGAAAAAAAAATTCAACAAAATAGTTGTTTGTTTTTTTTTTTGGATTTCTAGGCCAAGGAATCTACTAAAAATTTCAAAAAAAATCGAAAAAAATAAGATTTTCTCGCGTTCTTTGCCTTTTCTTCCTCACTCGGAGCCCATGGCCTAGAAATCCGCAAAACCTCTTCCATCTCCCCTTCCCCTCCTTCCAATCCCTTTTAGTGTCCCCCTCCCGCCGCTTCCCCCCGCCATTGCCTTTCCGTGCAAATGTCTCTGCGTCTCTATCCCTGTCTCTCGCTC</canonical>
            <polymorphic>GTCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTAWGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCGACACGTTTTCTCTTTTTCAGCGACCTCTCCGCTATCTGCGGCAGGGAGGAGCATGTGACTGTGATTGCCTAGAAAATGCAAAAAGCAGAAATTCGGCCATATATTTAAGAGCTACGTTTTCGAGCCACAATTTTCTAAAGATCGAAAAAAAAATTCAACAAAATAGTTGTTTGTTTTTTTTTTTGGATTTCTAGGCCAAGGAATCTACTAAAAATTTCAAAAAAAATCGAAAAAAATAAGATTTTCTCGCGTTCTTTGCCTTTTCTTCCTCACTCGGAGCCCATGGCCTAGAAATCCGCAAAACCTCTTCCATCTCCCCTTCCCCTCCTTCCAATCCCTTTTAGTGTCCCCCTCCCGCCGCTTCCCCCCGCCATTGCCTTTCCGTGCAAATGTCTCTGCGTCTCTATCCCTGTCTCTCGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGACAAATTTTTGGGTCATTT</pcr_primer_p1>
		<pcr_primer_p2>CGAATTGATAAAAACTGATAACAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCG</canonical_amplicon>
		<polymorphic_amplicon>TAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTAWGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30621</snp_id>
        <super_contig>c005500756.Contig1</super_contig>
        <contig_pos>3708</contig_pos>
        <strand></strand>
        <context>TTTCGCCYAW[G/T]TTTCGACTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTAT</left_flank>
        <right_flank>TTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCGACACGTTTTCTCTTTTTCAGCGACCTCTCCGCTATCTGCGGCAGGGAGGAGCATGTGACTGTGATTGCCTAGAAAATGCAAAAAGCAGAAATTCGGCCATATATTTAAGAGCTACGTTTTCGAGCCACAATTTTCTAAAGATCGAAAAAAAAATTCAACAAAATAGTTGTTTGTTTTTTTTTTTGGATTTCTAGGCCAAGGAATCTACTAAAAATTTCAAAAAAAATCGAAAAAAATAAGATTTTCTCGCGTTCTTTGCCTTTTCTTCCTCACTCGGAGCCCATGGCCTAGAAATCCGCAAAACCTCTTCCATCTCCCCTTCCCCTCCTTCCAATCCCTTTTAGTGTCCCCCTCCCGCCGCTTCCCCCCGCCATTGCCTTTCCGTGCAAATGTCTCTGCGTCTCTATCCCTGTCTCTCGCTCT</canonical>
            <polymorphic>TCAAAGTGGGAACCGGTGGCCTAGCGGCCAGGTGTGAGTTTTCTAGGCCAACTGCCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCAGTGTTTTCTCTGATGGTTTTTAAAGATTTCAAAGTATTTTCGTTAATTTCCTCCCAGGTGAATGAAAAAACTTTTTCTCAATGAAGGATTTTTTTTTGAATTTTTTCGTTATTTTTATGGGGATCTACATGGAATTCTGCACAAAATACACCACCTTTAAGGTTATTTTTGAGTAATTTTTGACTTTTTTTCAAATGGTTTTGGTCAATTTAAAGAATTTTTTAACTCTTTTAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATKTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCGACACGTTTTCTCTTTTTCAGCGACCTCTCCGCTATCTGCGGCAGGGAGGAGCATGTGACTGTGATTGCCTAGAAAATGCAAAAAGCAGAAATTCGGCCATATATTTAAGAGCTACGTTTTCGAGCCACAATTTTCTAAAGATCGAAAAAAAAATTCAACAAAATAGTTGTTTGTTTTTTTTTTTGGATTTCTAGGCCAAGGAATCTACTAAAAATTTCAAAAAAAATCGAAAAAAATAAGATTTTCTCGCGTTCTTTGCCTTTTCTTCCTCACTCGGAGCCCATGGCCTAGAAATCCGCAAAACCTCTTCCATCTCCCCTTCCCCTCCTTCCAATCCCTTTTAGTGTCCCCCTCCCGCCGCTTCCCCCCGCCATTGCCTTTCCGTGCAAATGTCTCTGCGTCTCTATCCCTGTCTCTCGCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGACAAATTTTTGGGTCATTT</pcr_primer_p1>
		<pcr_primer_p2>CGAATTGATAAAAACTGATAACAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATGTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCG</canonical_amplicon>
		<polymorphic_amplicon>TAGACAAATTTTTGGGTCATTTTGAACCACTTTTTGAGTATTTTTTTGCCGATTTTTCCCTTATTTTCGACTATTTTCAGCCGTTTTCACATGATTTTTTGACTTTTTTTTTTTATTTTTTCCAATTTCCCGCCTAAACCTGAAAATTGAAATTTTCGAAAATTTTCGCCTATKTTTCGACTGAAACGTCGCCTATATAAACTTACAATTTCTCTTTTATTTTTTCAGTGTTATCAGTTTTTATCAATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30622</snp_id>
        <super_contig>c005500756.Contig1</super_contig>
        <contig_pos>52602</contig_pos>
        <strand>+</strand>
        <context>GGAAGTCTTG[C/T]CTACCAGTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCCAAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTG</left_flank>
        <right_flank>CTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTC</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATTTAAAACATTCGCGACTTGACTTTCAAAAAAAAAACCTGCTACTCAAAATTTTGATAAAATAGAGACATGTCACGCAGAATATAAAAAATCGCGTGAAAATTGAAAACTAAAATCTACTTGGGATATTATGTATTTTCGTCTTCTTTAAAATATACCCTTTAGTAATGATTCGGCCATAACTCACTCTGGTCCTAACAAACAAACTGATGTTATATTTTCTCCGTAATTTGTCCTCTTCACACATGCTATATCAGTTTGCAACGAATTAACAAATTCGTTAGATTCTCCTTTGTTTAACAATTCGTTAAATTTTGTTTTCCACCCTTCTCCCATTGCTGTGTAGTCAGTGATACGGTAGGTCATGATAGTATAGGAAGAAGTTGTTCTGGTTTTTTCATAATCGGTTTTTGAGATGGTTGCGACAATATCACTGAGTTCCTGGCTCCAAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCATGAGCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACTTACAAAGTTCCAGAGTCACTTTGATAGAGTTCACGTATTCTAAAAAATTTTGATTTTTTTTGCTAATTAAAAAAACCAATATTCAGAAAAAAAAAACGAAAAGTTGGTTTTCGGTCAGTAGGCCATCTTGATAAGAAACTGTCTATAAAAAGATTTAAAAAAAACTAAAAAAGTTCAATTTTA</canonical>
            <polymorphic>AAAAATTTAAAACATTCGCGACTTGACTTTCAAAAAAAAAACCTGCTACTCAAAATTTTGATAAAATAGAGACATGTCACGCAGAATATAAAAAATCGCGTGAAAATTGAAAACTAAAATCTACTTGGGATATTATGTATTTTCGTCTTCTTTAAAATATACCCTTTAGTAATGATTCGGCCATAACTCACTCTGGTCCTAACAAACAAACTGATGTTATATTTTCTCCGTAATTTGTCCTCTTCACACATGCTATATCAGTTTGCAACGAATTAACAAATTCGTTAGATTCTCCTTTGTTTAACAATTCGTTAAATTTTGTTTTCCACCCTTCTCCCATTGCTGTGTAGTCAGTGATACGGTAGGTCATGATAGTATAGGAAGAAGTTGTTCTGGTTTTTTCATAATCGGTTTTTGAGATGGTTGCGACAATATCACTGAGTTCCTGGCTCCAAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGYCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCATGAGCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACTTACAAAGTTCCAGAGTCACTTTGATAGAGTTCACGTATTCTAAAAAATTTTGATTTTTTTTGCTAATTAAAAAAACCAATATTCAGAAAAAAAAAACGAAAAGTTGGTTTTCGGTCAGTAGGCCATCTTGATAAGAAACTGTCTATAAAAAGATTTAAAAAAAACTAAAAAAGTTCAATTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 347 152</canonical_bands>
                <polymorphic_bands>848 152</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGTAGTCAGTGATACGGTAGGT</pcr_primer_p1>
		<pcr_primer_p2>AAATTCATTGCTCAGATTAACG</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>GTGTAGTCAGTGATACGGTAGGTCATGATAGTATAGGAAGAAGTTGTTCTGGTTTTTTCATAATCGGTTTTTGAGATGGTTGCGACAATATCACTGAGTTCCTGGCTCCAAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTT</canonical_amplicon>
		<polymorphic_amplicon>GTGTAGTCAGTGATACGGTAGGTCATGATAGTATAGGAAGAAGTTGTTCTGGTTTTTTCATAATCGGTTTTTGAGATGGTTGCGACAATATCACTGAGTTCCTGGCTCCAAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGYCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30623</snp_id>
        <super_contig>c005500756.Contig1</super_contig>
        <contig_pos>52623</contig_pos>
        <strand>+</strand>
        <context>ATGCATATTT[A/G]GRATATTCCR</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTT</left_flank>
        <right_flank>GAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGACTTTCAAAAAAAAAACCTGCTACTCAAAATTTTGATAAAATAGAGACATGTCACGCAGAATATAAAAAATCGCGTGAAAATTGAAAACTAAAATCTACTTGGGATATTATGTATTTTCGTCTTCTTTAAAATATACCCTTTAGTAATGATTCGGCCATAACTCACTCTGGTCCTAACAAACAAACTGATGTTATATTTTCTCCGTAATTTGTCCTCTTCACACATGCTATATCAGTTTGCAACGAATTAACAAATTCGTTAGATTCTCCTTTGTTTAACAATTCGTTAAATTTTGTTTTCCACCCTTCTCCCATTGCTGTGTAGTCAGTGATACGGTAGGTCATGATAGTATAGGAAGAAGTTGTTCTGGTTTTTTCATAATCGGTTTTTGAGATGGTTGCGACAATATCACTGAGTTCCTGGCTCCAAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCATGAGCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACTTACAAAGTTCCAGAGTCACTTTGATAGAGTTCACGTATTCTAAAAAATTTTGATTTTTTTTGCTAATTAAAAAAACCAATATTCAGAAAAAAAAAACGAAAAGTTGGTTTTCGGTCAGTAGGCCATCTTGATAAGAAACTGTCTATAAAAAGATTTAAAAAAAACTAAAAAAGTTCAATTTTAAATTTTCATCAAAGAAACCAA</canonical>
            <polymorphic>CTTGACTTTCAAAAAAAAAACCTGCTACTCAAAATTTTGATAAAATAGAGACATGTCACGCAGAATATAAAAAATCGCGTGAAAATTGAAAACTAAAATCTACTTGGGATATTATGTATTTTCGTCTTCTTTAAAATATACCCTTTAGTAATGATTCGGCCATAACTCACTCTGGTCCTAACAAACAAACTGATGTTATATTTTCTCCGTAATTTGTCCTCTTCACACATGCTATATCAGTTTGCAACGAATTAACAAATTCGTTAGATTCTCCTTTGTTTAACAATTCGTTAAATTTTGTTTTCCACCCTTCTCCCATTGCTGTGTAGTCAGTGATACGGTAGGTCATGATAGTATAGGAAGAAGTTGTTCTGGTTTTTTCATAATCGGTTTTTGAGATGGTTGCGACAATATCACTGAGTTCCTGGCTCCAAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTRGAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCATGAGCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACTTACAAAGTTCCAGAGTCACTTTGATAGAGTTCACGTATTCTAAAAAATTTTGATTTTTTTTGCTAATTAAAAAAACCAATATTCAGAAAAAAAAAACGAAAAGTTGGTTTTCGGTCAGTAGGCCATCTTGATAAGAAACTGTCTATAAAAAGATTTAAAAAAAACTAAAAAAGTTCAATTTTAAATTTTCATCAAAGAAACCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCTGCAAAACAAAATCTGTA</pcr_primer_p1>
		<pcr_primer_p2>AATTTTCGTCTGAGAAATCAATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATT</canonical_amplicon>
		<polymorphic_amplicon>AAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTRGAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30624</snp_id>
        <super_contig>c005500756.Contig1</super_contig>
        <contig_pos>52625</contig_pos>
        <strand>+</strand>
        <context>GCATATTTRG[A/G]ATATTCCRTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGG</left_flank>
        <right_flank>ATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACTTTCAAAAAAAAAACCTGCTACTCAAAATTTTGATAAAATAGAGACATGTCACGCAGAATATAAAAAATCGCGTGAAAATTGAAAACTAAAATCTACTTGGGATATTATGTATTTTCGTCTTCTTTAAAATATACCCTTTAGTAATGATTCGGCCATAACTCACTCTGGTCCTAACAAACAAACTGATGTTATATTTTCTCCGTAATTTGTCCTCTTCACACATGCTATATCAGTTTGCAACGAATTAACAAATTCGTTAGATTCTCCTTTGTTTAACAATTCGTTAAATTTTGTTTTCCACCCTTCTCCCATTGCTGTGTAGTCAGTGATACGGTAGGTCATGATAGTATAGGAAGAAGTTGTTCTGGTTTTTTCATAATCGGTTTTTGAGATGGTTGCGACAATATCACTGAGTTCCTGGCTCCAAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCATGAGCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACTTACAAAGTTCCAGAGTCACTTTGATAGAGTTCACGTATTCTAAAAAATTTTGATTTTTTTTGCTAATTAAAAAAACCAATATTCAGAAAAAAAAAACGAAAAGTTGGTTTTCGGTCAGTAGGCCATCTTGATAAGAAACTGTCTATAAAAAGATTTAAAAAAAACTAAAAAAGTTCAATTTTAAATTTTCATCAAAGAAACCAATA</canonical>
            <polymorphic>TGACTTTCAAAAAAAAAACCTGCTACTCAAAATTTTGATAAAATAGAGACATGTCACGCAGAATATAAAAAATCGCGTGAAAATTGAAAACTAAAATCTACTTGGGATATTATGTATTTTCGTCTTCTTTAAAATATACCCTTTAGTAATGATTCGGCCATAACTCACTCTGGTCCTAACAAACAAACTGATGTTATATTTTCTCCGTAATTTGTCCTCTTCACACATGCTATATCAGTTTGCAACGAATTAACAAATTCGTTAGATTCTCCTTTGTTTAACAATTCGTTAAATTTTGTTTTCCACCCTTCTCCCATTGCTGTGTAGTCAGTGATACGGTAGGTCATGATAGTATAGGAAGAAGTTGTTCTGGTTTTTTCATAATCGGTTTTTGAGATGGTTGCGACAATATCACTGAGTTCCTGGCTCCAAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGRATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCATGAGCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACTTACAAAGTTCCAGAGTCACTTTGATAGAGTTCACGTATTCTAAAAAATTTTGATTTTTTTTGCTAATTAAAAAAACCAATATTCAGAAAAAAAAAACGAAAAGTTGGTTTTCGGTCAGTAGGCCATCTTGATAAGAAACTGTCTATAAAAAGATTTAAAAAAAACTAAAAAAGTTCAATTTTAAATTTTCATCAAAGAAACCAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 372 126</canonical_bands>
                <polymorphic_bands>874 126</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTCTGCAAAACAAAATCTGTA</pcr_primer_p1>
		<pcr_primer_p2>AATTTTCGTCTGAGAAATCAATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATT</canonical_amplicon>
		<polymorphic_amplicon>AAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGRATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30625</snp_id>
        <super_contig>c005500756.Contig1</super_contig>
        <contig_pos>52633</contig_pos>
        <strand>+</strand>
        <context>RGRATATTCC[A/G]TTCATTTGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCC</left_flank>
        <right_flank>TTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAAAAACCTGCTACTCAAAATTTTGATAAAATAGAGACATGTCACGCAGAATATAAAAAATCGCGTGAAAATTGAAAACTAAAATCTACTTGGGATATTATGTATTTTCGTCTTCTTTAAAATATACCCTTTAGTAATGATTCGGCCATAACTCACTCTGGTCCTAACAAACAAACTGATGTTATATTTTCTCCGTAATTTGTCCTCTTCACACATGCTATATCAGTTTGCAACGAATTAACAAATTCGTTAGATTCTCCTTTGTTTAACAATTCGTTAAATTTTGTTTTCCACCCTTCTCCCATTGCTGTGTAGTCAGTGATACGGTAGGTCATGATAGTATAGGAAGAAGTTGTTCTGGTTTTTTCATAATCGGTTTTTGAGATGGTTGCGACAATATCACTGAGTTCCTGGCTCCAAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCATGAGCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACTTACAAAGTTCCAGAGTCACTTTGATAGAGTTCACGTATTCTAAAAAATTTTGATTTTTTTTGCTAATTAAAAAAACCAATATTCAGAAAAAAAAAACGAAAAGTTGGTTTTCGGTCAGTAGGCCATCTTGATAAGAAACTGTCTATAAAAAGATTTAAAAAAAACTAAAAAAGTTCAATTTTAAATTTTCATCAAAGAAACCAATAAAAAAGAT</canonical>
            <polymorphic>AAAAAAAAAACCTGCTACTCAAAATTTTGATAAAATAGAGACATGTCACGCAGAATATAAAAAATCGCGTGAAAATTGAAAACTAAAATCTACTTGGGATATTATGTATTTTCGTCTTCTTTAAAATATACCCTTTAGTAATGATTCGGCCATAACTCACTCTGGTCCTAACAAACAAACTGATGTTATATTTTCTCCGTAATTTGTCCTCTTCACACATGCTATATCAGTTTGCAACGAATTAACAAATTCGTTAGATTCTCCTTTGTTTAACAATTCGTTAAATTTTGTTTTCCACCCTTCTCCCATTGCTGTGTAGTCAGTGATACGGTAGGTCATGATAGTATAGGAAGAAGTTGTTCTGGTTTTTTCATAATCGGTTTTTGAGATGGTTGCGACAATATCACTGAGTTCCTGGCTCCAAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCRTTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCATGAGCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACTTACAAAGTTCCAGAGTCACTTTGATAGAGTTCACGTATTCTAAAAAATTTTGATTTTTTTTGCTAATTAAAAAAACCAATATTCAGAAAAAAAAAACGAAAAGTTGGTTTTCGGTCAGTAGGCCATCTTGATAAGAAACTGTCTATAAAAAGATTTAAAAAAAACTAAAAAAGTTCAATTTTAAATTTTCATCAAAGAAACCAATAAAAAAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCTGCAAAACAAAATCTGTA</pcr_primer_p1>
		<pcr_primer_p2>AATTTTCGTCTGAGAAATCAATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATT</canonical_amplicon>
		<polymorphic_amplicon>AAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCRTTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30626</snp_id>
        <super_contig>c005500756.Contig1</super_contig>
        <contig_pos>52644</contig_pos>
        <strand>+</strand>
        <context>TTCATTTGCT[A/T]CCTTTTTCYT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCT</left_flank>
        <right_flank>CCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGCTACTCAAAATTTTGATAAAATAGAGACATGTCACGCAGAATATAAAAAATCGCGTGAAAATTGAAAACTAAAATCTACTTGGGATATTATGTATTTTCGTCTTCTTTAAAATATACCCTTTAGTAATGATTCGGCCATAACTCACTCTGGTCCTAACAAACAAACTGATGTTATATTTTCTCCGTAATTTGTCCTCTTCACACATGCTATATCAGTTTGCAACGAATTAACAAATTCGTTAGATTCTCCTTTGTTTAACAATTCGTTAAATTTTGTTTTCCACCCTTCTCCCATTGCTGTGTAGTCAGTGATACGGTAGGTCATGATAGTATAGGAAGAAGTTGTTCTGGTTTTTTCATAATCGGTTTTTGAGATGGTTGCGACAATATCACTGAGTTCCTGGCTCCAAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCATGAGCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACTTACAAAGTTCCAGAGTCACTTTGATAGAGTTCACGTATTCTAAAAAATTTTGATTTTTTTTGCTAATTAAAAAAACCAATATTCAGAAAAAAAAAACGAAAAGTTGGTTTTCGGTCAGTAGGCCATCTTGATAAGAAACTGTCTATAAAAAGATTTAAAAAAAACTAAAAAAGTTCAATTTTAAATTTTCATCAAAGAAACCAATAAAAAAGATAAGATGCTCAT</canonical>
            <polymorphic>CTGCTACTCAAAATTTTGATAAAATAGAGACATGTCACGCAGAATATAAAAAATCGCGTGAAAATTGAAAACTAAAATCTACTTGGGATATTATGTATTTTCGTCTTCTTTAAAATATACCCTTTAGTAATGATTCGGCCATAACTCACTCTGGTCCTAACAAACAAACTGATGTTATATTTTCTCCGTAATTTGTCCTCTTCACACATGCTATATCAGTTTGCAACGAATTAACAAATTCGTTAGATTCTCCTTTGTTTAACAATTCGTTAAATTTTGTTTTCCACCCTTCTCCCATTGCTGTGTAGTCAGTGATACGGTAGGTCATGATAGTATAGGAAGAAGTTGTTCTGGTTTTTTCATAATCGGTTTTTGAGATGGTTGCGACAATATCACTGAGTTCCTGGCTCCAAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTWCCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCATGAGCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACTTACAAAGTTCCAGAGTCACTTTGATAGAGTTCACGTATTCTAAAAAATTTTGATTTTTTTTGCTAATTAAAAAAACCAATATTCAGAAAAAAAAAACGAAAAGTTGGTTTTCGGTCAGTAGGCCATCTTGATAAGAAACTGTCTATAAAAAGATTTAAAAAAAACTAAAAAAGTTCAATTTTAAATTTTCATCAAAGAAACCAATAAAAAAGATAAGATGCTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCTGCAAAACAAAATCTGTA</pcr_primer_p1>
		<pcr_primer_p2>AATTTTCGTCTGAGAAATCAATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATT</canonical_amplicon>
		<polymorphic_amplicon>AAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTWCCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30627</snp_id>
        <super_contig>c005500756.Contig1</super_contig>
        <contig_pos>52653</contig_pos>
        <strand>+</strand>
        <context>TWCCTTTTTC[C/T]TTTCCTCGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTC</left_flank>
        <right_flank>TTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTTTGATAAAATAGAGACATGTCACGCAGAATATAAAAAATCGCGTGAAAATTGAAAACTAAAATCTACTTGGGATATTATGTATTTTCGTCTTCTTTAAAATATACCCTTTAGTAATGATTCGGCCATAACTCACTCTGGTCCTAACAAACAAACTGATGTTATATTTTCTCCGTAATTTGTCCTCTTCACACATGCTATATCAGTTTGCAACGAATTAACAAATTCGTTAGATTCTCCTTTGTTTAACAATTCGTTAAATTTTGTTTTCCACCCTTCTCCCATTGCTGTGTAGTCAGTGATACGGTAGGTCATGATAGTATAGGAAGAAGTTGTTCTGGTTTTTTCATAATCGGTTTTTGAGATGGTTGCGACAATATCACTGAGTTCCTGGCTCCAAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCATGAGCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACTTACAAAGTTCCAGAGTCACTTTGATAGAGTTCACGTATTCTAAAAAATTTTGATTTTTTTTGCTAATTAAAAAAACCAATATTCAGAAAAAAAAAACGAAAAGTTGGTTTTCGGTCAGTAGGCCATCTTGATAAGAAACTGTCTATAAAAAGATTTAAAAAAAACTAAAAAAGTTCAATTTTAAATTTTCATCAAAGAAACCAATAAAAAAGATAAGATGCTCATGATGAAAAA</canonical>
            <polymorphic>AAAATTTTGATAAAATAGAGACATGTCACGCAGAATATAAAAAATCGCGTGAAAATTGAAAACTAAAATCTACTTGGGATATTATGTATTTTCGTCTTCTTTAAAATATACCCTTTAGTAATGATTCGGCCATAACTCACTCTGGTCCTAACAAACAAACTGATGTTATATTTTCTCCGTAATTTGTCCTCTTCACACATGCTATATCAGTTTGCAACGAATTAACAAATTCGTTAGATTCTCCTTTGTTTAACAATTCGTTAAATTTTGTTTTCCACCCTTCTCCCATTGCTGTGTAGTCAGTGATACGGTAGGTCATGATAGTATAGGAAGAAGTTGTTCTGGTTTTTTCATAATCGGTTTTTGAGATGGTTGCGACAATATCACTGAGTTCCTGGCTCCAAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTCYTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCATGAGCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACTTACAAAGTTCCAGAGTCACTTTGATAGAGTTCACGTATTCTAAAAAATTTTGATTTTTTTTGCTAATTAAAAAAACCAATATTCAGAAAAAAAAAACGAAAAGTTGGTTTTCGGTCAGTAGGCCATCTTGATAAGAAACTGTCTATAAAAAGATTTAAAAAAAACTAAAAAAGTTCAATTTTAAATTTTCATCAAAGAAACCAATAAAAAAGATAAGATGCTCATGATGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCTGCAAAACAAAATCTGTA</pcr_primer_p1>
		<pcr_primer_p2>AATTTTCGTCTGAGAAATCAATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATT</canonical_amplicon>
		<polymorphic_amplicon>AAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTCYTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30628</snp_id>
        <super_contig>c005500756.Contig1</super_contig>
        <contig_pos>52683</contig_pos>
        <strand>+</strand>
        <context>AATGAATTTT[G/T]CCTGCTCTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTT</left_flank>
        <right_flank>CCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAATATAAAAAATCGCGTGAAAATTGAAAACTAAAATCTACTTGGGATATTATGTATTTTCGTCTTCTTTAAAATATACCCTTTAGTAATGATTCGGCCATAACTCACTCTGGTCCTAACAAACAAACTGATGTTATATTTTCTCCGTAATTTGTCCTCTTCACACATGCTATATCAGTTTGCAACGAATTAACAAATTCGTTAGATTCTCCTTTGTTTAACAATTCGTTAAATTTTGTTTTCCACCCTTCTCCCATTGCTGTGTAGTCAGTGATACGGTAGGTCATGATAGTATAGGAAGAAGTTGTTCTGGTTTTTTCATAATCGGTTTTTGAGATGGTTGCGACAATATCACTGAGTTCCTGGCTCCAAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCATGAGCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACTTACAAAGTTCCAGAGTCACTTTGATAGAGTTCACGTATTCTAAAAAATTTTGATTTTTTTTGCTAATTAAAAAAACCAATATTCAGAAAAAAAAAACGAAAAGTTGGTTTTCGGTCAGTAGGCCATCTTGATAAGAAACTGTCTATAAAAAGATTTAAAAAAAACTAAAAAAGTTCAATTTTAAATTTTCATCAAAGAAACCAATAAAAAAGATAAGATGCTCATGATGAAAAAAATCTTTATCATCAACATCTTTTTATTGAT</canonical>
            <polymorphic>CAGAATATAAAAAATCGCGTGAAAATTGAAAACTAAAATCTACTTGGGATATTATGTATTTTCGTCTTCTTTAAAATATACCCTTTAGTAATGATTCGGCCATAACTCACTCTGGTCCTAACAAACAAACTGATGTTATATTTTCTCCGTAATTTGTCCTCTTCACACATGCTATATCAGTTTGCAACGAATTAACAAATTCGTTAGATTCTCCTTTGTTTAACAATTCGTTAAATTTTGTTTTCCACCCTTCTCCCATTGCTGTGTAGTCAGTGATACGGTAGGTCATGATAGTATAGGAAGAAGTTGTTCTGGTTTTTTCATAATCGGTTTTTGAGATGGTTGCGACAATATCACTGAGTTCCTGGCTCCAAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTKCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCATGAGCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACTTACAAAGTTCCAGAGTCACTTTGATAGAGTTCACGTATTCTAAAAAATTTTGATTTTTTTTGCTAATTAAAAAAACCAATATTCAGAAAAAAAAAACGAAAAGTTGGTTTTCGGTCAGTAGGCCATCTTGATAAGAAACTGTCTATAAAAAGATTTAAAAAAAACTAAAAAAGTTCAATTTTAAATTTTCATCAAAGAAACCAATAAAAAAGATAAGATGCTCATGATGAAAAAAATCTTTATCATCAACATCTTTTTATTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCTGCAAAACAAAATCTGTA</pcr_primer_p1>
		<pcr_primer_p2>AATTTTCGTCTGAGAAATCAATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATT</canonical_amplicon>
		<polymorphic_amplicon>AAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTKCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30629</snp_id>
        <super_contig>c005500756.Contig1</super_contig>
        <contig_pos>52722</contig_pos>
        <strand>+</strand>
        <context>AACAGTGGAT[G/T]AAATCAATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGAT</left_flank>
        <right_flank>AAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACTTGGGATATTATGTATTTTCGTCTTCTTTAAAATATACCCTTTAGTAATGATTCGGCCATAACTCACTCTGGTCCTAACAAACAAACTGATGTTATATTTTCTCCGTAATTTGTCCTCTTCACACATGCTATATCAGTTTGCAACGAATTAACAAATTCGTTAGATTCTCCTTTGTTTAACAATTCGTTAAATTTTGTTTTCCACCCTTCTCCCATTGCTGTGTAGTCAGTGATACGGTAGGTCATGATAGTATAGGAAGAAGTTGTTCTGGTTTTTTCATAATCGGTTTTTGAGATGGTTGCGACAATATCACTGAGTTCCTGGCTCCAAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCATGAGCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACTTACAAAGTTCCAGAGTCACTTTGATAGAGTTCACGTATTCTAAAAAATTTTGATTTTTTTTGCTAATTAAAAAAACCAATATTCAGAAAAAAAAAACGAAAAGTTGGTTTTCGGTCAGTAGGCCATCTTGATAAGAAACTGTCTATAAAAAGATTTAAAAAAAACTAAAAAAGTTCAATTTTAAATTTTCATCAAAGAAACCAATAAAAAAGATAAGATGCTCATGATGAAAAAAATCTTTATCATCAACATCTTTTTATTGATTTTATCCACTGTTTCCATGAACTTTCCTGACAAAGAGCA</canonical>
            <polymorphic>CTACTTGGGATATTATGTATTTTCGTCTTCTTTAAAATATACCCTTTAGTAATGATTCGGCCATAACTCACTCTGGTCCTAACAAACAAACTGATGTTATATTTTCTCCGTAATTTGTCCTCTTCACACATGCTATATCAGTTTGCAACGAATTAACAAATTCGTTAGATTCTCCTTTGTTTAACAATTCGTTAAATTTTGTTTTCCACCCTTCTCCCATTGCTGTGTAGTCAGTGATACGGTAGGTCATGATAGTATAGGAAGAAGTTGTTCTGGTTTTTTCATAATCGGTTTTTGAGATGGTTGCGACAATATCACTGAGTTCCTGGCTCCAAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATKAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCATGAGCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACTTACAAAGTTCCAGAGTCACTTTGATAGAGTTCACGTATTCTAAAAAATTTTGATTTTTTTTGCTAATTAAAAAAACCAATATTCAGAAAAAAAAAACGAAAAGTTGGTTTTCGGTCAGTAGGCCATCTTGATAAGAAACTGTCTATAAAAAGATTTAAAAAAAACTAAAAAAGTTCAATTTTAAATTTTCATCAAAGAAACCAATAAAAAAGATAAGATGCTCATGATGAAAAAAATCTTTATCATCAACATCTTTTTATTGATTTTATCCACTGTTTCCATGAACTTTCCTGACAAAGAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCTGCAAAACAAAATCTGTA</pcr_primer_p1>
		<pcr_primer_p2>AATTTTCGTCTGAGAAATCAATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATT</canonical_amplicon>
		<polymorphic_amplicon>AAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATKAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30630</snp_id>
        <super_contig>c005500756.Contig1</super_contig>
        <contig_pos>52772</contig_pos>
        <strand>+</strand>
        <context>TCATGAGCAT[A/C]TTTTTTTATT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCAT</left_flank>
        <right_flank>TTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGATTCGGCCATAACTCACTCTGGTCCTAACAAACAAACTGATGTTATATTTTCTCCGTAATTTGTCCTCTTCACACATGCTATATCAGTTTGCAACGAATTAACAAATTCGTTAGATTCTCCTTTGTTTAACAATTCGTTAAATTTTGTTTTCCACCCTTCTCCCATTGCTGTGTAGTCAGTGATACGGTAGGTCATGATAGTATAGGAAGAAGTTGTTCTGGTTTTTTCATAATCGGTTTTTGAGATGGTTGCGACAATATCACTGAGTTCCTGGCTCCAAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCATGAGCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACTTACAAAGTTCCAGAGTCACTTTGATAGAGTTCACGTATTCTAAAAAATTTTGATTTTTTTTGCTAATTAAAAAAACCAATATTCAGAAAAAAAAAACGAAAAGTTGGTTTTCGGTCAGTAGGCCATCTTGATAAGAAACTGTCTATAAAAAGATTTAAAAAAAACTAAAAAAGTTCAATTTTAAATTTTCATCAAAGAAACCAATAAAAAAGATAAGATGCTCATGATGAAAAAAATCTTTATCATCAACATCTTTTTATTGATTTTATCCACTGTTTCCATGAACTTTCCTGACAAAGAGCAGGCAAAATTCATTGCTCAGATTAACGAAAAGAGGAAAGAGATAGCAAAAC</canonical>
            <polymorphic>AATGATTCGGCCATAACTCACTCTGGTCCTAACAAACAAACTGATGTTATATTTTCTCCGTAATTTGTCCTCTTCACACATGCTATATCAGTTTGCAACGAATTAACAAATTCGTTAGATTCTCCTTTGTTTAACAATTCGTTAAATTTTGTTTTCCACCCTTCTCCCATTGCTGTGTAGTCAGTGATACGGTAGGTCATGATAGTATAGGAAGAAGTTGTTCTGGTTTTTTCATAATCGGTTTTTGAGATGGTTGCGACAATATCACTGAGTTCCTGGCTCCAAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATMTTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCATGAGCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACTTACAAAGTTCCAGAGTCACTTTGATAGAGTTCACGTATTCTAAAAAATTTTGATTTTTTTTGCTAATTAAAAAAACCAATATTCAGAAAAAAAAAACGAAAAGTTGGTTTTCGGTCAGTAGGCCATCTTGATAAGAAACTGTCTATAAAAAGATTTAAAAAAAACTAAAAAAGTTCAATTTTAAATTTTCATCAAAGAAACCAATAAAAAAGATAAGATGCTCATGATGAAAAAAATCTTTATCATCAACATCTTTTTATTGATTTTATCCACTGTTTCCATGAACTTTCCTGACAAAGAGCAGGCAAAATTCATTGCTCAGATTAACGAAAAGAGGAAAGAGATAGCAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAGAATTCATGGAAACAGT</pcr_primer_p1>
		<pcr_primer_p2>CTATCAAAGTGACTCTGGAACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCATGAGCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACTTACAAAGTTCCAGAGTCACTTTGATAG</canonical_amplicon>
		<polymorphic_amplicon>AGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATMTTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCATGAGCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACTTACAAAGTTCCAGAGTCACTTTGATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30631</snp_id>
        <super_contig>c005500756.Contig1</super_contig>
        <contig_pos>52866</contig_pos>
        <strand>+</strand>
        <context>AAGATGACCA[A/T]KASCCCATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCA</left_flank>
        <right_flank>GAGCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAACGAATTAACAAATTCGTTAGATTCTCCTTTGTTTAACAATTCGTTAAATTTTGTTTTCCACCCTTCTCCCATTGCTGTGTAGTCAGTGATACGGTAGGTCATGATAGTATAGGAAGAAGTTGTTCTGGTTTTTTCATAATCGGTTTTTGAGATGGTTGCGACAATATCACTGAGTTCCTGGCTCCAAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCATGAGCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACTTACAAAGTTCCAGAGTCACTTTGATAGAGTTCACGTATTCTAAAAAATTTTGATTTTTTTTGCTAATTAAAAAAACCAATATTCAGAAAAAAAAAACGAAAAGTTGGTTTTCGGTCAGTAGGCCATCTTGATAAGAAACTGTCTATAAAAAGATTTAAAAAAAACTAAAAAAGTTCAATTTTAAATTTTCATCAAAGAAACCAATAAAAAAGATAAGATGCTCATGATGAAAAAAATCTTTATCATCAACATCTTTTTATTGATTTTATCCACTGTTTCCATGAACTTTCCTGACAAAGAGCAGGCAAAATTCATTGCTCAGATTAACGAAAAGAGGAAAGAGATAGCAAAACATTGGGATATTCCAAATATGCACCAGCTGGTAGGCAAGACATCTGGATTAGGGATTCCATTTGGGCGGGTGGAAAAAAGAGCCACCCGCCGGAG</canonical>
            <polymorphic>GCAACGAATTAACAAATTCGTTAGATTCTCCTTTGTTTAACAATTCGTTAAATTTTGTTTTCCACCCTTCTCCCATTGCTGTGTAGTCAGTGATACGGTAGGTCATGATAGTATAGGAAGAAGTTGTTCTGGTTTTTTCATAATCGGTTTTTGAGATGGTTGCGACAATATCACTGAGTTCCTGGCTCCAAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCAWGAGCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACTTACAAAGTTCCAGAGTCACTTTGATAGAGTTCACGTATTCTAAAAAATTTTGATTTTTTTTGCTAATTAAAAAAACCAATATTCAGAAAAAAAAAACGAAAAGTTGGTTTTCGGTCAGTAGGCCATCTTGATAAGAAACTGTCTATAAAAAGATTTAAAAAAAACTAAAAAAGTTCAATTTTAAATTTTCATCAAAGAAACCAATAAAAAAGATAAGATGCTCATGATGAAAAAAATCTTTATCATCAACATCTTTTTATTGATTTTATCCACTGTTTCCATGAACTTTCCTGACAAAGAGCAGGCAAAATTCATTGCTCAGATTAACGAAAAGAGGAAAGAGATAGCAAAACATTGGGATATTCCAAATATGCACCAGCTGGTAGGCAAGACATCTGGATTAGGGATTCCATTTGGGCGGGTGGAAAAAAGAGCCACCCGCCGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>278 167 142 104 101 94 57 57</canonical_bands>
                <polymorphic_bands>379 167 142 104 94 57 57</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGAGAATTCATGGAAACAGT</pcr_primer_p1>
		<pcr_primer_p2>CTATCAAAGTGACTCTGGAACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCATGAGCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACTTACAAAGTTCCAGAGTCACTTTGATAG</canonical_amplicon>
		<polymorphic_amplicon>AGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCAWGAGCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACTTACAAAGTTCCAGAGTCACTTTGATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30632</snp_id>
        <super_contig>c005500756.Contig1</super_contig>
        <contig_pos>52867</contig_pos>
        <strand>+</strand>
        <context>AGATGACCAW[G/T]ASCCCATTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCAT</left_flank>
        <right_flank>AGCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACGAATTAACAAATTCGTTAGATTCTCCTTTGTTTAACAATTCGTTAAATTTTGTTTTCCACCCTTCTCCCATTGCTGTGTAGTCAGTGATACGGTAGGTCATGATAGTATAGGAAGAAGTTGTTCTGGTTTTTTCATAATCGGTTTTTGAGATGGTTGCGACAATATCACTGAGTTCCTGGCTCCAAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCATGAGCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACTTACAAAGTTCCAGAGTCACTTTGATAGAGTTCACGTATTCTAAAAAATTTTGATTTTTTTTGCTAATTAAAAAAACCAATATTCAGAAAAAAAAAACGAAAAGTTGGTTTTCGGTCAGTAGGCCATCTTGATAAGAAACTGTCTATAAAAAGATTTAAAAAAAACTAAAAAAGTTCAATTTTAAATTTTCATCAAAGAAACCAATAAAAAAGATAAGATGCTCATGATGAAAAAAATCTTTATCATCAACATCTTTTTATTGATTTTATCCACTGTTTCCATGAACTTTCCTGACAAAGAGCAGGCAAAATTCATTGCTCAGATTAACGAAAAGAGGAAAGAGATAGCAAAACATTGGGATATTCCAAATATGCACCAGCTGGTAGGCAAGACATCTGGATTAGGGATTCCATTTGGGCGGGTGGAAAAAAGAGCCACCCGCCGGAGG</canonical>
            <polymorphic>CAACGAATTAACAAATTCGTTAGATTCTCCTTTGTTTAACAATTCGTTAAATTTTGTTTTCCACCCTTCTCCCATTGCTGTGTAGTCAGTGATACGGTAGGTCATGATAGTATAGGAAGAAGTTGTTCTGGTTTTTTCATAATCGGTTTTTGAGATGGTTGCGACAATATCACTGAGTTCCTGGCTCCAAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCATKAGCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACTTACAAAGTTCCAGAGTCACTTTGATAGAGTTCACGTATTCTAAAAAATTTTGATTTTTTTTGCTAATTAAAAAAACCAATATTCAGAAAAAAAAAACGAAAAGTTGGTTTTCGGTCAGTAGGCCATCTTGATAAGAAACTGTCTATAAAAAGATTTAAAAAAAACTAAAAAAGTTCAATTTTAAATTTTCATCAAAGAAACCAATAAAAAAGATAAGATGCTCATGATGAAAAAAATCTTTATCATCAACATCTTTTTATTGATTTTATCCACTGTTTCCATGAACTTTCCTGACAAAGAGCAGGCAAAATTCATTGCTCAGATTAACGAAAAGAGGAAAGAGATAGCAAAACATTGGGATATTCCAAATATGCACCAGCTGGTAGGCAAGACATCTGGATTAGGGATTCCATTTGGGCGGGTGGAAAAAAGAGCCACCCGCCGGAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>278 168 142 103 101 94 57 57</canonical_bands>
                <polymorphic_bands>379 168 142 103 94 57 57</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGAGAATTCATGGAAACAGT</pcr_primer_p1>
		<pcr_primer_p2>CTATCAAAGTGACTCTGGAACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCATGAGCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACTTACAAAGTTCCAGAGTCACTTTGATAG</canonical_amplicon>
		<polymorphic_amplicon>AGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCATKAGCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACTTACAAAGTTCCAGAGTCACTTTGATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30633</snp_id>
        <super_contig>c005500756.Contig1</super_contig>
        <contig_pos>52869</contig_pos>
        <strand>+</strand>
        <context>ATGACCAWKA[C/G]CCCATTTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCATGA</left_flank>
        <right_flank>CCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGAATTAACAAATTCGTTAGATTCTCCTTTGTTTAACAATTCGTTAAATTTTGTTTTCCACCCTTCTCCCATTGCTGTGTAGTCAGTGATACGGTAGGTCATGATAGTATAGGAAGAAGTTGTTCTGGTTTTTTCATAATCGGTTTTTGAGATGGTTGCGACAATATCACTGAGTTCCTGGCTCCAAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCATGAGCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACTTACAAAGTTCCAGAGTCACTTTGATAGAGTTCACGTATTCTAAAAAATTTTGATTTTTTTTGCTAATTAAAAAAACCAATATTCAGAAAAAAAAAACGAAAAGTTGGTTTTCGGTCAGTAGGCCATCTTGATAAGAAACTGTCTATAAAAAGATTTAAAAAAAACTAAAAAAGTTCAATTTTAAATTTTCATCAAAGAAACCAATAAAAAAGATAAGATGCTCATGATGAAAAAAATCTTTATCATCAACATCTTTTTATTGATTTTATCCACTGTTTCCATGAACTTTCCTGACAAAGAGCAGGCAAAATTCATTGCTCAGATTAACGAAAAGAGGAAAGAGATAGCAAAACATTGGGATATTCCAAATATGCACCAGCTGGTAGGCAAGACATCTGGATTAGGGATTCCATTTGGGCGGGTGGAAAAAAGAGCCACCCGCCGGAGGGG</canonical>
            <polymorphic>ACGAATTAACAAATTCGTTAGATTCTCCTTTGTTTAACAATTCGTTAAATTTTGTTTTCCACCCTTCTCCCATTGCTGTGTAGTCAGTGATACGGTAGGTCATGATAGTATAGGAAGAAGTTGTTCTGGTTTTTTCATAATCGGTTTTTGAGATGGTTGCGACAATATCACTGAGTTCCTGGCTCCAAGTCTGCAAAACAAAATCTGTAAATCGGAAAATCCGGAAGTCTTGTCTACCAGTTCATGCATATTTGGAATATTCCATTCATTTGCTACCTTTTTCTTTTCCTCGTTAATCTGAGCAATGAATTTTTCCTGCTCTTGATCAGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCATGASCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACTTACAAAGTTCCAGAGTCACTTTGATAGAGTTCACGTATTCTAAAAAATTTTGATTTTTTTTGCTAATTAAAAAAACCAATATTCAGAAAAAAAAAACGAAAAGTTGGTTTTCGGTCAGTAGGCCATCTTGATAAGAAACTGTCTATAAAAAGATTTAAAAAAAACTAAAAAAGTTCAATTTTAAATTTTCATCAAAGAAACCAATAAAAAAGATAAGATGCTCATGATGAAAAAAATCTTTATCATCAACATCTTTTTATTGATTTTATCCACTGTTTCCATGAACTTTCCTGACAAAGAGCAGGCAAAATTCATTGCTCAGATTAACGAAAAGAGGAAAGAGATAGCAAAACATTGGGATATTCCAAATATGCACCAGCTGGTAGGCAAGACATCTGGATTAGGGATTCCATTTGGGCGGGTGGAAAAAAGAGCCACCCGCCGGAGGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>277 257 182 172 55 27 16 14</canonical_bands>
                <polymorphic_bands>277 257 199 182 55 16 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGAGAATTCATGGAAACAGT</pcr_primer_p1>
		<pcr_primer_p2>CTATCAAAGTGACTCTGGAACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCATGAGCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACTTACAAAGTTCCAGAGTCACTTTGATAG</canonical_amplicon>
		<polymorphic_amplicon>AGGAGAATTCATGGAAACAGTGGATGAAATCAATAAAAATATGTTGATGATGAAGATATTTTTCATCATGAGCATCTTTTTTTATTGATTTCTCAGACGAAAATTGAAAATTGACCGCTTTCAGGCACAAAGCTTTTCTTTTATAGCCAGTTTCTTATCAAGATGACCATGASCCCATTTTTTTCGGATTTTTTGAATACGTGGATTTTAAAAAAGTGACACTTACAAAGTTCCAGAGTCACTTTGATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30634</snp_id>
        <super_contig>c005500756.Contig1</super_contig>
        <contig_pos>54991</contig_pos>
        <strand></strand>
        <context>GTTTTAGAAT[A/C]MAAAAATTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAAGGGCCATATGTGAATAAGGACCCTCGTTCAACCTGTGTTTTAGAAT</left_flank>
        <right_flank>AAAAAATTACCGTACTTTTTCAGTGGAAAATATTCCGGGAACTCCGCAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACGAAATTTGAAAAAATTATTTTCCATTTTATGTTTTTCAATTTTCTTTTTTTCCAAAAAAACACACACACACTAAAGATCTTTTTCATCATGAGCATCTTGATTTTTTATTGATTTCTCTGATAAAAATTGAAAAATGACTGATTTCAGGCTTATCGATCTTTTTTTGTAGTCAATTTTTTACCAAGATATCCTACTGACCAGCAAACCATTTTTAAGCGATTTGGTGGAATACATGAACTTTTAAAGAAGGTTTCAATTTTTTGACAGGGTATTTTTTGAAACGACCTTTCTTTCTTTCTTTTCTTTTGGATTCTTTTTATTTTGCAAAACGTGGACCATNNNNNNNNNNGAAAAATAATATACCGTAAAACCTGTGTTAGAAGGGCCCTTTTAATAGAAGGGGCCTTCGAGAGGGGTTGAAAAAAGAGAAGGGCCCCCTGGAATAGAAGGGCCATATGTGAATAAGGACCCTCGTTCAACCTGTGTTTTAGAATAAAAAAATTACCGTACTTTTTCAGTGGAAAATATTCCGGGAACTCCGCAATTTAATAGAATTTTGTTGAAACTCTATTTTTCGATGGAAAGTGTGATAGTTCTGTGTGAACACTTCCCGTCAAGGAGCGTGGCCTCGCAATTAGTGCTGCCTCTTCTCTCTCACCCAAGAAGCGTGCCTGCCACCCCGTCTTCAGTAGAGATGACTAGACCCGAGAATGAACAGTCATCCCGCGGTGTTCTCTTTTATTTATTTAACCTTTTCCCAATTTAGTTCACATGTTTTATCACCCCTAGTCAATCATCTATTTTAGAACCCCTTTAATCATGGAACCATTTTACATTAGTCTTTTTTCTTTTCTTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTCCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCATGCGTGCAAAGAGAAAGCGGA</canonical>
            <polymorphic>AAACGAAATTTGAAAAAATTATTTTCCATTTTATGTTTTTCAATTTTCTTTTTTTCCAAAAAAACACACACACACTAAAGATCTTTTTCATCATGAGCATCTTGATTTTTTATTGATTTCTCTGATAAAAATTGAAAAATGACTGATTTCAGGCTTATCGATCTTTTTTTGTAGTCAATTTTTTACCAAGATATCCTACTGACCAGCAAACCATTTTTAAGCGATTTGGTGGAATACATGAACTTTTAAAGAAGGTTTCAATTTTTTGACAGGGTATTTTTTGAAACGACCTTTCTTTCTTTCTTTTCTTTTGGATTCTTTTTATTTTGCAAAACGTGGACCATNNNNNNNNNNGAAAAATAATATACCGTAAAACCTGTGTTAGAAGGGCCCTTTTAATAGAAGGGGCCTTCGAGAGGGGTTGAAAAAAGAGAAGGGCCCCCTGGAATAGAAGGGCCATATGTGAATAAGGACCCTCGTTCAACCTGTGTTTTAGAATMAAAAAATTACCGTACTTTTTCAGTGGAAAATATTCCGGGAACTCCGCAATTTAATAGAATTTTGTTGAAACTCTATTTTTCGATGGAAAGTGTGATAGTTCTGTGTGAACACTTCCCGTCAAGGAGCGTGGCCTCGCAATTAGTGCTGCCTCTTCTCTCTCACCCAAGAAGCGTGCCTGCCACCCCGTCTTCAGTAGAGATGACTAGACCCGAGAATGAACAGTCATCCCGCGGTGTTCTCTTTTATTTATTTAACCTTTTCCCAATTTAGTTCACATGTTTTATCACCCCTAGTCAATCATCTATTTTAGAACCCCTTTAATCATGGAACCATTTTACATTAGTCTTTTTTCTTTTCTTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTCCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCATGCGTGCAAAGAGAAAGCGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTGGATTCTTTTTATTTTG</pcr_primer_p1>
		<pcr_primer_p2>AATTCTATTAAATTGCGGAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTGGATTCTTTTTATTTTGCAAAACGTGGACCATNNNNNNNNNNGAAAAATAATATACCGTAAAACCTGTGTTAGAAGGGCCCTTTTAATAGAAGGGGCCTTCGAGAGGGGTTGAAAAAAGAGAAGGGCCCCCTGGAATAGAAGGGCCATATGTGAATAAGGACCCTCGTTCAACCTGTGTTTTAGAATAAAAAAATTACCGTACTTTTTCAGTGGAAAATATTCCGGGAACTCCGCAATTTAATAGAATT</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTGGATTCTTTTTATTTTGCAAAACGTGGACCATNNNNNNNNNNGAAAAATAATATACCGTAAAACCTGTGTTAGAAGGGCCCTTTTAATAGAAGGGGCCTTCGAGAGGGGTTGAAAAAAGAGAAGGGCCCCCTGGAATAGAAGGGCCATATGTGAATAAGGACCCTCGTTCAACCTGTGTTTTAGAATMAAAAAATTACCGTACTTTTTCAGTGGAAAATATTCCGGGAACTCCGCAATTTAATAGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30635</snp_id>
        <super_contig>c005500756.Contig1</super_contig>
        <contig_pos>54992</contig_pos>
        <strand>+</strand>
        <context>TTTTAGAATM[A/C]AAAAATTACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAGGGCCATATGTGAATAAGGACCCTCGTTCAACCTGTGTTTTAGAATA</left_flank>
        <right_flank>AAAAATTACCGTACTTTTTCAGTGGAAAATATTCCGGGAACTCCGCAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGAAATTTGAAAAAATTATTTTCCATTTTATGTTTTTCAATTTTCTTTTTTTCCAAAAAAACACACACACACTAAAGATCTTTTTCATCATGAGCATCTTGATTTTTTATTGATTTCTCTGATAAAAATTGAAAAATGACTGATTTCAGGCTTATCGATCTTTTTTTGTAGTCAATTTTTTACCAAGATATCCTACTGACCAGCAAACCATTTTTAAGCGATTTGGTGGAATACATGAACTTTTAAAGAAGGTTTCAATTTTTTGACAGGGTATTTTTTGAAACGACCTTTCTTTCTTTCTTTTCTTTTGGATTCTTTTTATTTTGCAAAACGTGGACCATNNNNNNNNNNGAAAAATAATATACCGTAAAACCTGTGTTAGAAGGGCCCTTTTAATAGAAGGGGCCTTCGAGAGGGGTTGAAAAAAGAGAAGGGCCCCCTGGAATAGAAGGGCCATATGTGAATAAGGACCCTCGTTCAACCTGTGTTTTAGAATAAAAAAATTACCGTACTTTTTCAGTGGAAAATATTCCGGGAACTCCGCAATTTAATAGAATTTTGTTGAAACTCTATTTTTCGATGGAAAGTGTGATAGTTCTGTGTGAACACTTCCCGTCAAGGAGCGTGGCCTCGCAATTAGTGCTGCCTCTTCTCTCTCACCCAAGAAGCGTGCCTGCCACCCCGTCTTCAGTAGAGATGACTAGACCCGAGAATGAACAGTCATCCCGCGGTGTTCTCTTTTATTTATTTAACCTTTTCCCAATTTAGTTCACATGTTTTATCACCCCTAGTCAATCATCTATTTTAGAACCCCTTTAATCATGGAACCATTTTACATTAGTCTTTTTTCTTTTCTTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTCCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCATGCGTGCAAAGAGAAAGCGGAC</canonical>
            <polymorphic>AACGAAATTTGAAAAAATTATTTTCCATTTTATGTTTTTCAATTTTCTTTTTTTCCAAAAAAACACACACACACTAAAGATCTTTTTCATCATGAGCATCTTGATTTTTTATTGATTTCTCTGATAAAAATTGAAAAATGACTGATTTCAGGCTTATCGATCTTTTTTTGTAGTCAATTTTTTACCAAGATATCCTACTGACCAGCAAACCATTTTTAAGCGATTTGGTGGAATACATGAACTTTTAAAGAAGGTTTCAATTTTTTGACAGGGTATTTTTTGAAACGACCTTTCTTTCTTTCTTTTCTTTTGGATTCTTTTTATTTTGCAAAACGTGGACCATNNNNNNNNNNGAAAAATAATATACCGTAAAACCTGTGTTAGAAGGGCCCTTTTAATAGAAGGGGCCTTCGAGAGGGGTTGAAAAAAGAGAAGGGCCCCCTGGAATAGAAGGGCCATATGTGAATAAGGACCCTCGTTCAACCTGTGTTTTAGAATAMAAAAATTACCGTACTTTTTCAGTGGAAAATATTCCGGGAACTCCGCAATTTAATAGAATTTTGTTGAAACTCTATTTTTCGATGGAAAGTGTGATAGTTCTGTGTGAACACTTCCCGTCAAGGAGCGTGGCCTCGCAATTAGTGCTGCCTCTTCTCTCTCACCCAAGAAGCGTGCCTGCCACCCCGTCTTCAGTAGAGATGACTAGACCCGAGAATGAACAGTCATCCCGCGGTGTTCTCTTTTATTTATTTAACCTTTTCCCAATTTAGTTCACATGTTTTATCACCCCTAGTCAATCATCTATTTTAGAACCCCTTTAATCATGGAACCATTTTACATTAGTCTTTTTTCTTTTCTTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTCCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCATGCGTGCAAAGAGAAAGCGGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTGGATTCTTTTTATTTTG</pcr_primer_p1>
		<pcr_primer_p2>AATTCTATTAAATTGCGGAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTGGATTCTTTTTATTTTGCAAAACGTGGACCATNNNNNNNNNNGAAAAATAATATACCGTAAAACCTGTGTTAGAAGGGCCCTTTTAATAGAAGGGGCCTTCGAGAGGGGTTGAAAAAAGAGAAGGGCCCCCTGGAATAGAAGGGCCATATGTGAATAAGGACCCTCGTTCAACCTGTGTTTTAGAATAAAAAAATTACCGTACTTTTTCAGTGGAAAATATTCCGGGAACTCCGCAATTTAATAGAATT</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTGGATTCTTTTTATTTTGCAAAACGTGGACCATNNNNNNNNNNGAAAAATAATATACCGTAAAACCTGTGTTAGAAGGGCCCTTTTAATAGAAGGGGCCTTCGAGAGGGGTTGAAAAAAGAGAAGGGCCCCCTGGAATAGAAGGGCCATATGTGAATAAGGACCCTCGTTCAACCTGTGTTTTAGAATAMAAAAATTACCGTACTTTTTCAGTGGAAAATATTCCGGGAACTCCGCAATTTAATAGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30636</snp_id>
        <super_contig>c005500756.Contig1</super_contig>
        <contig_pos>55319</contig_pos>
        <strand>+</strand>
        <context>TTTAATCATG[A/G]AACCATTTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTTTATCACCCCTAGTCAATCATCTATTTTAGAACCCCTTTAATCATG</left_flank>
        <right_flank>AACCATTTTACATTAGTCTTTTTTCTTTTCTTAAAGGTGGGGGGACATGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAAAACGTGGACCATNNNNNNNNNNGAAAAATAATATACCGTAAAACCTGTGTTAGAAGGGCCCTTTTAATAGAAGGGGCCTTCGAGAGGGGTTGAAAAAAGAGAAGGGCCCCCTGGAATAGAAGGGCCATATGTGAATAAGGACCCTCGTTCAACCTGTGTTTTAGAATAAAAAAATTACCGTACTTTTTCAGTGGAAAATATTCCGGGAACTCCGCAATTTAATAGAATTTTGTTGAAACTCTATTTTTCGATGGAAAGTGTGATAGTTCTGTGTGAACACTTCCCGTCAAGGAGCGTGGCCTCGCAATTAGTGCTGCCTCTTCTCTCTCACCCAAGAAGCGTGCCTGCCACCCCGTCTTCAGTAGAGATGACTAGACCCGAGAATGAACAGTCATCCCGCGGTGTTCTCTTTTATTTATTTAACCTTTTCCCAATTTAGTTCACATGTTTTATCACCCCTAGTCAATCATCTATTTTAGAACCCCTTTAATCATGGAACCATTTTACATTAGTCTTTTTTCTTTTCTTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTCCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCATGCGTGCAAAGAGAAAGCGGACGCCCGATTGCATACTTAAAGGCGAGGACGACAGCTGTAAGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATACATACTCTAGCTAAAAAAAAACTACGAAAAATCTCCTGTCCTCCCACCTTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCCTTAAAATGTTTCAAAAAATATGTATTTTCATAATATTATTGCGAAAAAAATTCATAGAAAATTTTAAATCCCCGAAAAACGGCGTTGAAAAAAAATAGGATTTGAATTCCCGCGCAGTGAGAAACATAGGCCACGGCATCATAGCTCCTTTCTGACATGGAAA</canonical>
            <polymorphic>GCAAAACGTGGACCATNNNNNNNNNNGAAAAATAATATACCGTAAAACCTGTGTTAGAAGGGCCCTTTTAATAGAAGGGGCCTTCGAGAGGGGTTGAAAAAAGAGAAGGGCCCCCTGGAATAGAAGGGCCATATGTGAATAAGGACCCTCGTTCAACCTGTGTTTTAGAATAAAAAAATTACCGTACTTTTTCAGTGGAAAATATTCCGGGAACTCCGCAATTTAATAGAATTTTGTTGAAACTCTATTTTTCGATGGAAAGTGTGATAGTTCTGTGTGAACACTTCCCGTCAAGGAGCGTGGCCTCGCAATTAGTGCTGCCTCTTCTCTCTCACCCAAGAAGCGTGCCTGCCACCCCGTCTTCAGTAGAGATGACTAGACCCGAGAATGAACAGTCATCCCGCGGTGTTCTCTTTTATTTATTTAACCTTTTCCCAATTTAGTTCACATGTTTTATCACCCCTAGTCAATCATCTATTTTAGAACCCCTTTAATCATGRAACCATTTTACATTAGTCTTTTTTCTTTTCTTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTCCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCATGCGTGCAAAGAGAAAGCGGACGCCCGATTGCATACTTAAAGGCGAGGACGACAGCTGTAAGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATACATACTCTAGCTAAAAAAAAACTACGAAAAATCTCCTGTCCTCCCACCTTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCCTTAAAATGTTTCAAAAAATATGTATTTTCATAATATTATTGCGAAAAAAATTCATAGAAAATTTTAAATCCCCGAAAAACGGCGTTGAAAAAAAATAGGATTTGAATTCCCGCGCAGTGAGAAACATAGGCCACGGCATCATAGCTCCTTTCTGACATGGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>368 356 131 62 35 31 17</canonical_bands>
                <polymorphic_bands>487 368 62 35 31 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTTTTATCACCCCTAGTCAA</pcr_primer_p1>
		<pcr_primer_p2>TCGCCTTTAAGTATGCAATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGTTTTATCACCCCTAGTCAATCATCTATTTTAGAACCCCTTTAATCATGGAACCATTTTACATTAGTCTTTTTTCTTTTCTTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTCCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCATGCGTGCAAAGAGAAAGCGGACGCCCGATTGCATACTTAAAGGCGA</canonical_amplicon>
		<polymorphic_amplicon>ATGTTTTATCACCCCTAGTCAATCATCTATTTTAGAACCCCTTTAATCATGRAACCATTTTACATTAGTCTTTTTTCTTTTCTTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTCCGTTTAAATATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCATGCGTGCAAAGAGAAAGCGGACGCCCGATTGCATACTTAAAGGCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30637</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>78545</contig_pos>
        <strand>-</strand>
        <context>AGAAACCAAC[A/G]AACACTTCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATGCTGTAAACAAGTTCGTTTGAATTCACATATTTCGGAAGAAACCAAC</left_flank>
        <right_flank>AACACTTCAGAAATATCAAAGGTCTCCGAGAAAGGTTCAATCGTGCCGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGGTTGTGGTGTTGTCAAGTTATTATAACCTACTACGAGGCGAAACTGAAGAGTTTTCTTCTCCTCTCTCATCACCGTGGTACAATTTTCAATACTTTGGATGGTGTTCTAGAAGCAGCAGAGCACAAGGGTTGGACCCTTGTCATTCAAAAGTGGGGATACACTCCATATCTATACTGTAATCCGGAGCAGTGTGAACGATTAGATCGACTAAAGTCAAAGTAAGTAAAAAGTGTTTCAATTTTAGATTCATTCTAATTTTCTTAACGTTTCAGAATAGTGTTTCTTGACATCGACGACGACATGAATCTAGTTATAACTCAAGATAAACATGTTGGCTTCTCTGCTGTGGCTAGTGATCTTGCTCAATCGGATATCACCTATTTCGATTATCATTCGAAAATCCTATTTGTTCGAGACAAAATAATGGCTCCAGAATATCTGGCATATGCTGTAAACAAGTTCGTTTGAATTCACATATTTCGGAAGAAACCAACTAACACTTCAGAAATATCAAAGGTCTCCGAGAAAGGTTCAATCGTGCCGTTGCGTATACCAAGAATGGATATGACACAGTTCGGTCCAGATACATTGCATCATTTGCTAACTACAATTCTGTGACTTCACAAACTCAAACTGTAAATTAAATGATTTTACCGCAAAACCTGTAATAGAAGGGCCCCTAACTTTCAACTTTGAGCCAATTTATCTCGGTTCCTGTCAGAGGTATAGAAAAGCTTTCAACTGATAAAATGTTTATCATATTACCAGAAGTGTTCTGTCAGTTGACACATTTTGATATCATGCATGGGAATTGAGATAATTAGGCTTAAACTTGACAGTGTAGGGGCCCTTCAATTACTGGTTTTACGGTATAATTTAATCTTGGGCGTTTTTAGGTCACCGTACTTCAAACAACTCATTTCATTCAGTTATACAAGTTCTGTCTTATAATTTATGCAGTCGCGGGAATCGTACTTCTACTAGGTAAGATGAAA</canonical>
            <polymorphic>TCTGGTTGTGGTGTTGTCAAGTTATTATAACCTACTACGAGGCGAAACTGAAGAGTTTTCTTCTCCTCTCTCATCACCGTGGTACAATTTTCAATACTTTGGATGGTGTTCTAGAAGCAGCAGAGCACAAGGGTTGGACCCTTGTCATTCAAAAGTGGGGATACACTCCATATCTATACTGTAATCCGGAGCAGTGTGAACGATTAGATCGACTAAAGTCAAAGTAAGTAAAAAGTGTTTCAATTTTAGATTCATTCTAATTTTCTTAACGTTTCAGAATAGTGTTTCTTGACATCGACGACGACATGAATCTAGTTATAACTCAAGATAAACATGTTGGCTTCTCTGCTGTGGCTAGTGATCTTGCTCAATCGGATATCACCTATTTCGATTATCATTCGAAAATCCTATTTGTTCGAGACAAAATAATGGCTCCAGAATATCTGGCATATGCTGTAAACAAGTTCGTTTGAATTCACATATTTCGGAAGAAACCAACRAACACTTCAGAAATATCAAAGGTCTCCGAGAAAGGTTCAATCGTGCCGTTGCGTATACCAAGAATGGATATGACACAGTTCGGTCCAGATACATTGCATCATTTGCTAACTACAATTCTGTGACTTCACAAACTCAAACTGTAAATTAAATGATTTTACCGCAAAACCTGTAATAGAAGGGCCCCTAACTTTCAACTTTGAGCCAATTTATCTCGGTTCCTGTCAGAGGTATAGAAAAGCTTTCAACTGATAAAATGTTTATCATATTACCAGAAGTGTTCTGTCAGTTGACACATTTTGATATCATGCATGGGAATTGAGATAATTAGGCTTAAACTTGACAGTGTAGGGGCCCTTCAATTACTGGTTTTACGGTATAATTTAATCTTGGGCGTTTTTAGGTCACCGTACTTCAAACAACTCATTTCATTCAGTTATACAAGTTCTGTCTTATAATTTATGCAGTCGCGGGAATCGTACTTCTACTAGGTAAGATGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCGAAAATCCTATTTGTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTACAGTTTGAGTTTGTGAAGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTCGAAAATCCTATTTGTTCGAGACAAAATAATGGCTCCAGAATATCTGGCATATGCTGTAAACAAGTTCGTTTGAATTCACATATTTCGGAAGAAACCAACTAACACTTCAGAAATATCAAAGGTCTCCGAGAAAGGTTCAATCGTGCCGTTGCGTATACCAAGAATGGATATGACACAGTTCGGTCCAGATACATTGCATCATTTGCTAACTACAATTCTGTGACTTCACAAACTCAAACTGTAAA</canonical_amplicon>
		<polymorphic_amplicon>CATTCGAAAATCCTATTTGTTCGAGACAAAATAATGGCTCCAGAATATCTGGCATATGCTGTAAACAAGTTCGTTTGAATTCACATATTTCGGAAGAAACCAACRAACACTTCAGAAATATCAAAGGTCTCCGAGAAAGGTTCAATCGTGCCGTTGCGTATACCAAGAATGGATATGACACAGTTCGGTCCAGATACATTGCATCATTTGCTAACTACAATTCTGTGACTTCACAAACTCAAACTGTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30638</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>93715</contig_pos>
        <strand></strand>
        <context>aaagttaggg[A/G]ctcttctatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATATCTTTGACAGGAACCGAGATAAATTTGCTCAAAGTTAAAGTTAGGG</left_flank>
        <right_flank>CTCTTCTATTACAGGTATTACTGTCTTTGTGGCTTCTGCTAGATTTTCAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTCAAAGTTGAAAGTTAGGGGGCCCTTCTATTACAGGTTTTGCGGTAAAATCATTTAATTTACAGTTTGAGTTTGTGAAGTCACAGAATTGTAGTTAGCAAATGATGCAATGTATCTGGACCGAACTGTGTCATATCCATTCTTGGTATACGCAACGGCACGATTGAACCTTTCTCGGAGACCTTTGATATTTCTGAAGTGTTGGTTTCTTTTGGTTTCTTCCGAAATATGTGAATTCAAACGAACTTGTTTACAGCATTTGCCAGATATTCTGGAGCCATTATTTTGTCTCGAACAAATAGGATTTTCGAATGATAATCGAAATAGGTGATATCCGATTGAGCAAGATTGAGCTCAATTACTTCAATTCCTATGAAAGATATCAAAAATGTGTCTTCTGACAAAACACTTCTGATATAACGATAAACCGTTTATCGGTTGACTTTTTTATATCTTTGACAGGAACCGAGATAAATTTGCTCAAAGTTAAAGTTAGGGACTCTTCTATTACAGGTATTACTGTCTTTGTGGCTTCTGCTAGATTTTCACAATGCAACAAAAATCCTATGAACTTGTCATTTTGTACTATTAATCTGGTTTTTGCAAACATACAAACGTATTATCAAATCACATGGTCTAAATAATGGAAAACATTTTGTAAAGATCATTTTTGGCAAACTTCGAACTTTTAGAGAAACTGTCCTCTTTGGATGTGCCCATATGACACCAAAAACCTGAAAATCGGTTCTTATCTATAATATAACCCCCGCATTTTCCTTCTTTTTTTCTCTTTCACATCAGTTTCAGCATGTTTTTAATTATTTTCAGATTCCATTTGACGTCATTCATGTCCATATGTTTTTTCGGTTTTGTTATCAGGAAAATGTTGATTTCTGTTTGTATTCTTTTTGTCTTTTTGCCAAACAATCTACTTTTTCCAGTTTTGTCAGTGACCAATAAAAAAGTATTTATTTACAAACAATTACTAGAACATGTTAA</canonical>
            <polymorphic>GCTCAAAGTTGAAAGTTAGGGGGCCCTTCTATTACAGGTTTTGCGGTAAAATCATTTAATTTACAGTTTGAGTTTGTGAAGTCACAGAATTGTAGTTAGCAAATGATGCAATGTATCTGGACCGAACTGTGTCATATCCATTCTTGGTATACGCAACGGCACGATTGAACCTTTCTCGGAGACCTTTGATATTTCTGAAGTGTTGGTTTCTTTTGGTTTCTTCCGAAATATGTGAATTCAAACGAACTTGTTTACAGCATTTGCCAGATATTCTGGAGCCATTATTTTGTCTCGAACAAATAGGATTTTCGAATGATAATCGAAATAGGTGATATCCGATTGAGCAAGATTGAGCTCAATTACTTCAATTCCTATGAAAGATATCAAAAATGTGTCTTCTGACAAAACACTTCTGATATAACGATAAACCGTTTATCGGTTGACTTTTTTATATCTTTGACAGGAACCGAGATAAATTTGCTCAAAGTTAAAGTTAGGGRCTCTTCTATTACAGGTATTACTGTCTTTGTGGCTTCTGCTAGATTTTCACAATGCAACAAAAATCCTATGAACTTGTCATTTTGTACTATTAATCTGGTTTTTGCAAACATACAAACGTATTATCAAATCACATGGTCTAAATAATGGAAAACATTTTGTAAAGATCATTTTTGGCAAACTTCGAACTTTTAGAGAAACTGTCCTCTTTGGATGTGCCCATATGACACCAAAAACCTGAAAATCGGTTCTTATCTATAATATAACCCCCGCATTTTCCTTCTTTTTTTCTCTTTCACATCAGTTTCAGCATGTTTTTAATTATTTTCAGATTCCATTTGACGTCATTCATGTCCATATGTTTTTTCGGTTTTGTTATCAGGAAAATGTTGATTTCTGTTTGTATTCTTTTTGTCTTTTTGCCAAACAATCTACTTTTTCCAGTTTTGTCAGTGACCAATAAAAAAGTATTTATTTACAAACAATTACTAGAACATGTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>499 330 171</canonical_bands>
                <polymorphic_bands>829 171</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGAATGATAATCGAAATAGGT</pcr_primer_p1>
		<pcr_primer_p2>GTTGCATTGTGAAAATCTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCGAATGATAATCGAAATAGGTGATATCCGATTGAGCAAGATTGAGCTCAATTACTTCAATTCCTATGAAAGATATCAAAAATGTGTCTTCTGACAAAACACTTCTGATATAACGATAAACCGTTTATCGGTTGACTTTTTTATATCTTTGACAGGAACCGAGATAAATTTGCTCAAAGTTAAAGTTAGGGACTCTTCTATTACAGGTATTACTGTCTTTGTGGCTTCTGCTAGATTTTCACAATGCAAC</canonical_amplicon>
		<polymorphic_amplicon>TCGAATGATAATCGAAATAGGTGATATCCGATTGAGCAAGATTGAGCTCAATTACTTCAATTCCTATGAAAGATATCAAAAATGTGTCTTCTGACAAAACACTTCTGATATAACGATAAACCGTTTATCGGTTGACTTTTTTATATCTTTGACAGGAACCGAGATAAATTTGCTCAAAGTTAAAGTTAGGGRCTCTTCTATTACAGGTATTACTGTCTTTGTGGCTTCTGCTAGATTTTCACAATGCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30639</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>99121</contig_pos>
        <strand>+</strand>
        <context>GGGATTCCGA[A/C]GCACCAAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAAAGGGGGAATTGGGAAAAAGGGGAGAGACATTTTTTTGGGGATTCCGA</left_flank>
        <right_flank>GCACCAAAAGAAACGAAACATTTTAATTCATACTAACCAAAAAGTGATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGGTACTTTGGATAATAACGTCTAAAACGACATTTTTTAGGTTTTAAAAGATTTCCGAGAAGTATTTTTTTTCCAAATCTCCAAAGTATTTCCTTTTTCGGGTACAAACTAAATCATCTTCCGTCATTTATTCTAACTCCCACGAATTCCGCGAATATGTTTTTCCCTGTCTGCTTTTTCATGTTCCCCCCTCAAAACAATACGTCGGTATCTTGGAAATATTTTTTGTATCTGGGACAGTAATAAACAGAAAGAGAGCGATACATGAACAATACAAGGATCACATGTATTTCATGTATGATTGATCTGAATTTTCCAGAAATTGATAAGAAAAAAGGGACAGTCAGGTGAGCTACTTATTGAGAATTTGGCAACATTTCAAATCAGCAAATTGATAAGAATGGATGAAGTTTGATGAAGCCAGACAGCAGAGTGTCTACGGGCAAACAAAGGGGGAATTGGGAAAAAGGGGAGAGACATTTTTTTGGGGATTCCGAAGCACCAAAAGAAACGAAACATTTTAATTCATACTAACCAAAAAGTGATTTATATCTGATTTTCAAAAATTTCCAGGCCATTTGTACAGATTTCAAAAAGATTCAATTCATCAGAAAGAAGATAAAAATGATTATTACTTAGGGAAGATATTCGAAGTTGGGAAAGGATTGTTGTAGGGAGAACATTGAATATTAAAAGGATTACTGTAGGGGAAATATTCGAAAATGAAACGGATTACTGTAGAAAAATTCGAAAATGAAAAAGAGTACTGTAGAAAAAAAAACTCGGGAATGAAAAGGATTACTGTAGAGAAGAAAATGATGTCATATTTCGAGCGATGATTTCGTTATTTGAATTAACCAGAATGTATACCATGTCATCTGCTCGATTTTTTGAATTGACCGTACAGTAACTCTTCTTATTTTGGAACTTTTCCGTAAAGTAATCTTTTTAGTTTTCGGTTTTTTTTCGCTACAGTAATCCTTTTCCAGTTCGAATAA</canonical>
            <polymorphic>ACTGGTACTTTGGATAATAACGTCTAAAACGACATTTTTTAGGTTTTAAAAGATTTCCGAGAAGTATTTTTTTTCCAAATCTCCAAAGTATTTCCTTTTTCGGGTACAAACTAAATCATCTTCCGTCATTTATTCTAACTCCCACGAATTCCGCGAATATGTTTTTCCCTGTCTGCTTTTTCATGTTCCCCCCTCAAAACAATACGTCGGTATCTTGGAAATATTTTTTGTATCTGGGACAGTAATAAACAGAAAGAGAGCGATACATGAACAATACAAGGATCACATGTATTTCATGTATGATTGATCTGAATTTTCCAGAAATTGATAAGAAAAAAGGGACAGTCAGGTGAGCTACTTATTGAGAATTTGGCAACATTTCAAATCAGCAAATTGATAAGAATGGATGAAGTTTGATGAAGCCAGACAGCAGAGTGTCTACGGGCAAACAAAGGGGGAATTGGGAAAAAGGGGAGAGACATTTTTTTGGGGATTCCGAMGCACCAAAAGAAACGAAACATTTTAATTCATACTAACCAAAAAGTGATTTATATCTGATTTTCAAAAATTTCCAGGCCATTTGTACAGATTTCAAAAAGATTCAATTCATCAGAAAGAAGATAAAAATGATTATTACTTAGGGAAGATATTCGAAGTTGGGAAAGGATTGTTGTAGGGAGAACATTGAATATTAAAAGGATTACTGTAGGGGAAATATTCGAAAATGAAACGGATTACTGTAGAAAAATTCGAAAATGAAAAAGAGTACTGTAGAAAAAAAAACTCGGGAATGAAAAGGATTACTGTAGAGAAGAAAATGATGTCATATTTCGAGCGATGATTTCGTTATTTGAATTAACCAGAATGTATACCATGTCATCTGCTCGATTTTTTGAATTGACCGTACAGTAACTCTTCTTATTTTGGAACTTTTCCGTAAAGTAATCTTTTTAGTTTTCGGTTTTTTTTCGCTACAGTAATCCTTTTCCAGTTCGAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATTTTCCAGAAATTGATAAG</pcr_primer_p1>
		<pcr_primer_p2>TCAGATATAAATCACTTTTTGGTTAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAATTTTCCAGAAATTGATAAGAAAAAAGGGACAGTCAGGTGAGCTACTTATTGAGAATTTGGCAACATTTCAAATCAGCAAATTGATAAGAATGGATGAAGTTTGATGAAGCCAGACAGCAGAGTGTCTACGGGCAAACAAAGGGGGAATTGGGAAAAAGGGGAGAGACATTTTTTTGGGGATTCCGAAGCACCAAAAGAAACGAAACATTTTAATTCATACTAACCAAAAAGTGATTTATATCTGA</canonical_amplicon>
		<polymorphic_amplicon>TGAATTTTCCAGAAATTGATAAGAAAAAAGGGACAGTCAGGTGAGCTACTTATTGAGAATTTGGCAACATTTCAAATCAGCAAATTGATAAGAATGGATGAAGTTTGATGAAGCCAGACAGCAGAGTGTCTACGGGCAAACAAAGGGGGAATTGGGAAAAAGGGGAGAGACATTTTTTTGGGGATTCCGAMGCACCAAAAGAAACGAAACATTTTAATTCATACTAACCAAAAAGTGATTTATATCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30640</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>101672</contig_pos>
        <strand>+</strand>
        <context>TAGGCTACAG[A/T]ACACAAAASA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTATGATTGTTCAAAGACCAGTCGGTTGAGAAGGGGATATTAGGCTACAG</left_flank>
        <right_flank>ACACAAAAGAAGTGAAGACTACAAACCAATAAGAAAAATGTAAATTCACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAAAAAAGAGCTTTTCGCCGCATACAAAAGTTGGCTGGGTGCCAGATTTCAATTTTTCAAAAAAAGCGTGCGTTCTATGCAAAGGACTTCTGACCAAACTTAATTGTCTGAAAGTTACTCTAAAACTCCAACAGACGTACAATTTGGAAATCAGTACAATTTGTGCTGACGTGAAATTTGACGAAAATCATGATAATGTAACTCGAAACTCGTAGTCTATGATAATGTTTTAGGTCTAGATTTGAAAAGAATCTTAAAGCCACAAAATACAGAATATACAATAAAAGGAGATATGCTTGAATTCAACAGGGTGGCGCAAAATTACTGATAACAACGGGTATAACTTTAGACATTAGTATCTTGGAAGCATCAAAGTTGGTAGGAATATAATTTTACGTTTGATTCGAAGCTACTAAAATGTTCGAAGCGATTCCCCAAGTCTAGGTGTTATGATTGTTCAAAGACCAGTCGGTTGAGAAGGGGATATTAGGCTACAGTACACAAAAGAAGTGAAGACTACAAACCAATAAGAAAAATGTAAATTCACATTTAACAGTGTCAAGTGTAAGGAATCTTCCTAAAAAAATAGGTAGCTCGTTGAATGAAGTATCAACTCAAAGTCTTCAAAAGGGACGGTACAAAAAGTTCAATAATTACAAAACCGCAATTTCTTTTTTGTAGATGCTTCTTCAATCTGAAAGGAATAATAATTTCTGGATCCCAAAAAAATTTCCTGTCTTAGAAACTACGACTTCAACTGAAAAGCTGTGAACTATACATAGACTTTTTAGCAAAACGGGATACGGACATATCTGGAACTGCATGATATCTACAATTAATACGTCGATAATGGTACCTAACGAATATTCCATATCTTCTAAAACTCGATAGCTATCTGCTTTTCCTTCTAAAAGTCTTCCACTGACTCTCAAACCAGCTTTACAAAGATCACTGACCACACACCTAACACCCGTCGTCCTTCTCACGTGTCTTTCCCT</canonical>
            <polymorphic>CTGAAAAAAGAGCTTTTCGCCGCATACAAAAGTTGGCTGGGTGCCAGATTTCAATTTTTCAAAAAAAGCGTGCGTTCTATGCAAAGGACTTCTGACCAAACTTAATTGTCTGAAAGTTACTCTAAAACTCCAACAGACGTACAATTTGGAAATCAGTACAATTTGTGCTGACGTGAAATTTGACGAAAATCATGATAATGTAACTCGAAACTCGTAGTCTATGATAATGTTTTAGGTCTAGATTTGAAAAGAATCTTAAAGCCACAAAATACAGAATATACAATAAAAGGAGATATGCTTGAATTCAACAGGGTGGCGCAAAATTACTGATAACAACGGGTATAACTTTAGACATTAGTATCTTGGAAGCATCAAAGTTGGTAGGAATATAATTTTACGTTTGATTCGAAGCTACTAAAATGTTCGAAGCGATTCCCCAAGTCTAGGTGTTATGATTGTTCAAAGACCAGTCGGTTGAGAAGGGGATATTAGGCTACAGWACACAAAAGAAGTGAAGACTACAAACCAATAAGAAAAATGTAAATTCACATTTAACAGTGTCAAGTGTAAGGAATCTTCCTAAAAAAATAGGTAGCTCGTTGAATGAAGTATCAACTCAAAGTCTTCAAAAGGGACGGTACAAAAAGTTCAATAATTACAAAACCGCAATTTCTTTTTTGTAGATGCTTCTTCAATCTGAAAGGAATAATAATTTCTGGATCCCAAAAAAATTTCCTGTCTTAGAAACTACGACTTCAACTGAAAAGCTGTGAACTATACATAGACTTTTTAGCAAAACGGGATACGGACATATCTGGAACTGCATGATATCTACAATTAATACGTCGATAATGGTACCTAACGAATATTCCATATCTTCTAAAACTCGATAGCTATCTGCTTTTCCTTCTAAAAGTCTTCCACTGACTCTCAAACCAGCTTTACAAAGATCACTGACCACACACCTAACACCCGTCGTCCTTCTCACGTGTCTTTCCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>343 217 144 140 139 17</canonical_bands>
                <polymorphic_bands>482 217 144 140 17</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>498 363 80 59</canonical_bands>
                <polymorphic_bands>557 363 80</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 271 228</canonical_bands>
                <polymorphic_bands>772 228</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>502 343 155</canonical_bands>
                <polymorphic_bands>845 155</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAATAAAAGGAGATATGCTTGA</pcr_primer_p1>
		<pcr_primer_p2>CTTCATTCAACGAGCTACCTAT</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>ACAATAAAAGGAGATATGCTTGAATTCAACAGGGTGGCGCAAAATTACTGATAACAACGGGTATAACTTTAGACATTAGTATCTTGGAAGCATCAAAGTTGGTAGGAATATAATTTTACGTTTGATTCGAAGCTACTAAAATGTTCGAAGCGATTCCCCAAGTCTAGGTGTTATGATTGTTCAAAGACCAGTCGGTTGAGAAGGGGATATTAGGCTACAGTACACAAAAGAAGTGAAGACTACAAACCAATAAGAAAAATGTAAATTCACATTTAACAGTGTCAAGTGTAAGGAATCTTCCTAAAAAAATAGGTAGCTCGTTGAATGAAG</canonical_amplicon>
		<polymorphic_amplicon>ACAATAAAAGGAGATATGCTTGAATTCAACAGGGTGGCGCAAAATTACTGATAACAACGGGTATAACTTTAGACATTAGTATCTTGGAAGCATCAAAGTTGGTAGGAATATAATTTTACGTTTGATTCGAAGCTACTAAAATGTTCGAAGCGATTCCCCAAGTCTAGGTGTTATGATTGTTCAAAGACCAGTCGGTTGAGAAGGGGATATTAGGCTACAGWACACAAAAGAAGTGAAGACTACAAACCAATAAGAAAAATGTAAATTCACATTTAACAGTGTCAAGTGTAAGGAATCTTCCTAAAAAAATAGGTAGCTCGTTGAATGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30641</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>101681</contig_pos>
        <strand>+</strand>
        <context>GWACACAAAA[C/G]AAGTGAAGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCAAAGACCAGTCGGTTGAGAAGGGGATATTAGGCTACAGTACACAAAA</left_flank>
        <right_flank>AAGTGAAGACTACAAACCAATAAGAAAAATGTAAATTCACATTTAACAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCTTTTCGCCGCATACAAAAGTTGGCTGGGTGCCAGATTTCAATTTTTCAAAAAAAGCGTGCGTTCTATGCAAAGGACTTCTGACCAAACTTAATTGTCTGAAAGTTACTCTAAAACTCCAACAGACGTACAATTTGGAAATCAGTACAATTTGTGCTGACGTGAAATTTGACGAAAATCATGATAATGTAACTCGAAACTCGTAGTCTATGATAATGTTTTAGGTCTAGATTTGAAAAGAATCTTAAAGCCACAAAATACAGAATATACAATAAAAGGAGATATGCTTGAATTCAACAGGGTGGCGCAAAATTACTGATAACAACGGGTATAACTTTAGACATTAGTATCTTGGAAGCATCAAAGTTGGTAGGAATATAATTTTACGTTTGATTCGAAGCTACTAAAATGTTCGAAGCGATTCCCCAAGTCTAGGTGTTATGATTGTTCAAAGACCAGTCGGTTGAGAAGGGGATATTAGGCTACAGTACACAAAAGAAGTGAAGACTACAAACCAATAAGAAAAATGTAAATTCACATTTAACAGTGTCAAGTGTAAGGAATCTTCCTAAAAAAATAGGTAGCTCGTTGAATGAAGTATCAACTCAAAGTCTTCAAAAGGGACGGTACAAAAAGTTCAATAATTACAAAACCGCAATTTCTTTTTTGTAGATGCTTCTTCAATCTGAAAGGAATAATAATTTCTGGATCCCAAAAAAATTTCCTGTCTTAGAAACTACGACTTCAACTGAAAAGCTGTGAACTATACATAGACTTTTTAGCAAAACGGGATACGGACATATCTGGAACTGCATGATATCTACAATTAATACGTCGATAATGGTACCTAACGAATATTCCATATCTTCTAAAACTCGATAGCTATCTGCTTTTCCTTCTAAAAGTCTTCCACTGACTCTCAAACCAGCTTTACAAAGATCACTGACCACACACCTAACACCCGTCGTCCTTCTCACGTGTCTTTCCCTTCTTCTCTC</canonical>
            <polymorphic>GAGCTTTTCGCCGCATACAAAAGTTGGCTGGGTGCCAGATTTCAATTTTTCAAAAAAAGCGTGCGTTCTATGCAAAGGACTTCTGACCAAACTTAATTGTCTGAAAGTTACTCTAAAACTCCAACAGACGTACAATTTGGAAATCAGTACAATTTGTGCTGACGTGAAATTTGACGAAAATCATGATAATGTAACTCGAAACTCGTAGTCTATGATAATGTTTTAGGTCTAGATTTGAAAAGAATCTTAAAGCCACAAAATACAGAATATACAATAAAAGGAGATATGCTTGAATTCAACAGGGTGGCGCAAAATTACTGATAACAACGGGTATAACTTTAGACATTAGTATCTTGGAAGCATCAAAGTTGGTAGGAATATAATTTTACGTTTGATTCGAAGCTACTAAAATGTTCGAAGCGATTCCCCAAGTCTAGGTGTTATGATTGTTCAAAGACCAGTCGGTTGAGAAGGGGATATTAGGCTACAGTACACAAAASAAGTGAAGACTACAAACCAATAAGAAAAATGTAAATTCACATTTAACAGTGTCAAGTGTAAGGAATCTTCCTAAAAAAATAGGTAGCTCGTTGAATGAAGTATCAACTCAAAGTCTTCAAAAGGGACGGTACAAAAAGTTCAATAATTACAAAACCGCAATTTCTTTTTTGTAGATGCTTCTTCAATCTGAAAGGAATAATAATTTCTGGATCCCAAAAAAATTTCCTGTCTTAGAAACTACGACTTCAACTGAAAAGCTGTGAACTATACATAGACTTTTTAGCAAAACGGGATACGGACATATCTGGAACTGCATGATATCTACAATTAATACGTCGATAATGGTACCTAACGAATATTCCATATCTTCTAAAACTCGATAGCTATCTGCTTTTCCTTCTAAAAGTCTTCCACTGACTCTCAAACCAGCTTTACAAAGATCACTGACCACACACCTAACACCCGTCGTCCTTCTCACGTGTCTTTCCCTTCTTCTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAATAAAAGGAGATATGCTTGA</pcr_primer_p1>
		<pcr_primer_p2>CTTCATTCAACGAGCTACCTAT</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>ACAATAAAAGGAGATATGCTTGAATTCAACAGGGTGGCGCAAAATTACTGATAACAACGGGTATAACTTTAGACATTAGTATCTTGGAAGCATCAAAGTTGGTAGGAATATAATTTTACGTTTGATTCGAAGCTACTAAAATGTTCGAAGCGATTCCCCAAGTCTAGGTGTTATGATTGTTCAAAGACCAGTCGGTTGAGAAGGGGATATTAGGCTACAGTACACAAAAGAAGTGAAGACTACAAACCAATAAGAAAAATGTAAATTCACATTTAACAGTGTCAAGTGTAAGGAATCTTCCTAAAAAAATAGGTAGCTCGTTGAATGAAG</canonical_amplicon>
		<polymorphic_amplicon>ACAATAAAAGGAGATATGCTTGAATTCAACAGGGTGGCGCAAAATTACTGATAACAACGGGTATAACTTTAGACATTAGTATCTTGGAAGCATCAAAGTTGGTAGGAATATAATTTTACGTTTGATTCGAAGCTACTAAAATGTTCGAAGCGATTCCCCAAGTCTAGGTGTTATGATTGTTCAAAGACCAGTCGGTTGAGAAGGGGATATTAGGCTACAGTACACAAAASAAGTGAAGACTACAAACCAATAAGAAAAATGTAAATTCACATTTAACAGTGTCAAGTGTAAGGAATCTTCCTAAAAAAATAGGTAGCTCGTTGAATGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30642</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>101745</contig_pos>
        <strand>+</strand>
        <context>AAGTGTAAGG[A/G]ATCTTCCTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACCAATAAGAAAAATGTAAATTCACATTTAACAGTGTCAAGTGTAAGG</left_flank>
        <right_flank>ATCTTCCTAAAAAAATAGGTAGCTCGTTGAATGAAGTATCAACTCAAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCTATGCAAAGGACTTCTGACCAAACTTAATTGTCTGAAAGTTACTCTAAAACTCCAACAGACGTACAATTTGGAAATCAGTACAATTTGTGCTGACGTGAAATTTGACGAAAATCATGATAATGTAACTCGAAACTCGTAGTCTATGATAATGTTTTAGGTCTAGATTTGAAAAGAATCTTAAAGCCACAAAATACAGAATATACAATAAAAGGAGATATGCTTGAATTCAACAGGGTGGCGCAAAATTACTGATAACAACGGGTATAACTTTAGACATTAGTATCTTGGAAGCATCAAAGTTGGTAGGAATATAATTTTACGTTTGATTCGAAGCTACTAAAATGTTCGAAGCGATTCCCCAAGTCTAGGTGTTATGATTGTTCAAAGACCAGTCGGTTGAGAAGGGGATATTAGGCTACAGTACACAAAAGAAGTGAAGACTACAAACCAATAAGAAAAATGTAAATTCACATTTAACAGTGTCAAGTGTAAGGAATCTTCCTAAAAAAATAGGTAGCTCGTTGAATGAAGTATCAACTCAAAGTCTTCAAAAGGGACGGTACAAAAAGTTCAATAATTACAAAACCGCAATTTCTTTTTTGTAGATGCTTCTTCAATCTGAAAGGAATAATAATTTCTGGATCCCAAAAAAATTTCCTGTCTTAGAAACTACGACTTCAACTGAAAAGCTGTGAACTATACATAGACTTTTTAGCAAAACGGGATACGGACATATCTGGAACTGCATGATATCTACAATTAATACGTCGATAATGGTACCTAACGAATATTCCATATCTTCTAAAACTCGATAGCTATCTGCTTTTCCTTCTAAAAGTCTTCCACTGACTCTCAAACCAGCTTTACAAAGATCACTGACCACACACCTAACACCCGTCGTCCTTCTCACGTGTCTTTCCCTTCTTCTCTCTTCTTTCTTAATTCTGACCTTTCAGTATAAATAAGATCCATCCCAGTGTACCCAGCTCATTCTT</canonical>
            <polymorphic>GTTCTATGCAAAGGACTTCTGACCAAACTTAATTGTCTGAAAGTTACTCTAAAACTCCAACAGACGTACAATTTGGAAATCAGTACAATTTGTGCTGACGTGAAATTTGACGAAAATCATGATAATGTAACTCGAAACTCGTAGTCTATGATAATGTTTTAGGTCTAGATTTGAAAAGAATCTTAAAGCCACAAAATACAGAATATACAATAAAAGGAGATATGCTTGAATTCAACAGGGTGGCGCAAAATTACTGATAACAACGGGTATAACTTTAGACATTAGTATCTTGGAAGCATCAAAGTTGGTAGGAATATAATTTTACGTTTGATTCGAAGCTACTAAAATGTTCGAAGCGATTCCCCAAGTCTAGGTGTTATGATTGTTCAAAGACCAGTCGGTTGAGAAGGGGATATTAGGCTACAGTACACAAAAGAAGTGAAGACTACAAACCAATAAGAAAAATGTAAATTCACATTTAACAGTGTCAAGTGTAAGGRATCTTCCTAAAAAAATAGGTAGCTCGTTGAATGAAGTATCAACTCAAAGTCTTCAAAAGGGACGGTACAAAAAGTTCAATAATTACAAAACCGCAATTTCTTTTTTGTAGATGCTTCTTCAATCTGAAAGGAATAATAATTTCTGGATCCCAAAAAAATTTCCTGTCTTAGAAACTACGACTTCAACTGAAAAGCTGTGAACTATACATAGACTTTTTAGCAAAACGGGATACGGACATATCTGGAACTGCATGATATCTACAATTAATACGTCGATAATGGTACCTAACGAATATTCCATATCTTCTAAAACTCGATAGCTATCTGCTTTTCCTTCTAAAAGTCTTCCACTGACTCTCAAACCAGCTTTACAAAGATCACTGACCACACACCTAACACCCGTCGTCCTTCTCACGTGTCTTTCCCTTCTTCTCTCTTCTTTCTTAATTCTGACCTTTCAGTATAAATAAGATCCATCCCAGTGTACCCAGCTCATTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>354 178 152 147 141 28</canonical_bands>
                <polymorphic_bands>495 178 152 147 28</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 178 152 141 28</canonical_bands>
                <polymorphic_bands>642 178 152 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACTACAAACCAATAAGAAAAATG</pcr_primer_p1>
		<pcr_primer_p2>TTTCAGTTGAAGTCGTAGTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGACTACAAACCAATAAGAAAAATGTAAATTCACATTTAACAGTGTCAAGTGTAAGGAATCTTCCTAAAAAAATAGGTAGCTCGTTGAATGAAGTATCAACTCAAAGTCTTCAAAAGGGACGGTACAAAAAGTTCAATAATTACAAAACCGCAATTTCTTTTTTGTAGATGCTTCTTCAATCTGAAAGGAATAATAATTTCTGGATCCCAAAAAAATTTCCTGTCTTAGAAACTACGACTTCAACTGAAA</canonical_amplicon>
		<polymorphic_amplicon>AGACTACAAACCAATAAGAAAAATGTAAATTCACATTTAACAGTGTCAAGTGTAAGGRATCTTCCTAAAAAAATAGGTAGCTCGTTGAATGAAGTATCAACTCAAAGTCTTCAAAAGGGACGGTACAAAAAGTTCAATAATTACAAAACCGCAATTTCTTTTTTGTAGATGCTTCTTCAATCTGAAAGGAATAATAATTTCTGGATCCCAAAAAAATTTCCTGTCTTAGAAACTACGACTTCAACTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30643</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>101816</contig_pos>
        <strand>+</strand>
        <context>GACGGTACAA[A/T]WAGTTCAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGCTCGTTGAATGAAGTATCAACTCAAAGTCTTCAAAAGGGACGGTACAA</left_flank>
        <right_flank>AAGTTCAATAATTACAAAACCGCAATTTCTTTTTTGTAGATGCTTCTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGAAATCAGTACAATTTGTGCTGACGTGAAATTTGACGAAAATCATGATAATGTAACTCGAAACTCGTAGTCTATGATAATGTTTTAGGTCTAGATTTGAAAAGAATCTTAAAGCCACAAAATACAGAATATACAATAAAAGGAGATATGCTTGAATTCAACAGGGTGGCGCAAAATTACTGATAACAACGGGTATAACTTTAGACATTAGTATCTTGGAAGCATCAAAGTTGGTAGGAATATAATTTTACGTTTGATTCGAAGCTACTAAAATGTTCGAAGCGATTCCCCAAGTCTAGGTGTTATGATTGTTCAAAGACCAGTCGGTTGAGAAGGGGATATTAGGCTACAGTACACAAAAGAAGTGAAGACTACAAACCAATAAGAAAAATGTAAATTCACATTTAACAGTGTCAAGTGTAAGGAATCTTCCTAAAAAAATAGGTAGCTCGTTGAATGAAGTATCAACTCAAAGTCTTCAAAAGGGACGGTACAAAAAGTTCAATAATTACAAAACCGCAATTTCTTTTTTGTAGATGCTTCTTCAATCTGAAAGGAATAATAATTTCTGGATCCCAAAAAAATTTCCTGTCTTAGAAACTACGACTTCAACTGAAAAGCTGTGAACTATACATAGACTTTTTAGCAAAACGGGATACGGACATATCTGGAACTGCATGATATCTACAATTAATACGTCGATAATGGTACCTAACGAATATTCCATATCTTCTAAAACTCGATAGCTATCTGCTTTTCCTTCTAAAAGTCTTCCACTGACTCTCAAACCAGCTTTACAAAGATCACTGACCACACACCTAACACCCGTCGTCCTTCTCACGTGTCTTTCCCTTCTTCTCTCTTCTTTCTTAATTCTGACCTTTCAGTATAAATAAGATCCATCCCAGTGTACCCAGCTCATTCTTCTACACAGTTTTCCTTCGTCCTTTTTCTTGTTTCTATGATCTCTGTCTTTCATTTTTGCACCTACTTGTTT</canonical>
            <polymorphic>TTTGGAAATCAGTACAATTTGTGCTGACGTGAAATTTGACGAAAATCATGATAATGTAACTCGAAACTCGTAGTCTATGATAATGTTTTAGGTCTAGATTTGAAAAGAATCTTAAAGCCACAAAATACAGAATATACAATAAAAGGAGATATGCTTGAATTCAACAGGGTGGCGCAAAATTACTGATAACAACGGGTATAACTTTAGACATTAGTATCTTGGAAGCATCAAAGTTGGTAGGAATATAATTTTACGTTTGATTCGAAGCTACTAAAATGTTCGAAGCGATTCCCCAAGTCTAGGTGTTATGATTGTTCAAAGACCAGTCGGTTGAGAAGGGGATATTAGGCTACAGTACACAAAAGAAGTGAAGACTACAAACCAATAAGAAAAATGTAAATTCACATTTAACAGTGTCAAGTGTAAGGAATCTTCCTAAAAAAATAGGTAGCTCGTTGAATGAAGTATCAACTCAAAGTCTTCAAAAGGGACGGTACAAWAAGTTCAATAATTACAAAACCGCAATTTCTTTTTTGTAGATGCTTCTTCAATCTGAAAGGAATAATAATTTCTGGATCCCAAAAAAATTTCCTGTCTTAGAAACTACGACTTCAACTGAAAAGCTGTGAACTATACATAGACTTTTTAGCAAAACGGGATACGGACATATCTGGAACTGCATGATATCTACAATTAATACGTCGATAATGGTACCTAACGAATATTCCATATCTTCTAAAACTCGATAGCTATCTGCTTTTCCTTCTAAAAGTCTTCCACTGACTCTCAAACCAGCTTTACAAAGATCACTGACCACACACCTAACACCCGTCGTCCTTCTCACGTGTCTTTCCCTTCTTCTCTCTTCTTTCTTAATTCTGACCTTTCAGTATAAATAAGATCCATCCCAGTGTACCCAGCTCATTCTTCTACACAGTTTTCCTTCGTCCTTTTTCTTGTTTCTATGATCTCTGTCTTTCATTTTTGCACCTACTTGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTAGCTCGTTGAATGAAGTAT</pcr_primer_p1>
		<pcr_primer_p2>AATTGTAGATATCATGCAGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTAGCTCGTTGAATGAAGTATCAACTCAAAGTCTTCAAAAGGGACGGTACAAAAAGTTCAATAATTACAAAACCGCAATTTCTTTTTTGTAGATGCTTCTTCAATCTGAAAGGAATAATAATTTCTGGATCCCAAAAAAATTTCCTGTCTTAGAAACTACGACTTCAACTGAAAAGCTGTGAACTATACATAGACTTTTTAGCAAAACGGGATACGGACATATCTGGAACTGCATGATATCTACAATT</canonical_amplicon>
		<polymorphic_amplicon>GGTAGCTCGTTGAATGAAGTATCAACTCAAAGTCTTCAAAAGGGACGGTACAAWAAGTTCAATAATTACAAAACCGCAATTTCTTTTTTGTAGATGCTTCTTCAATCTGAAAGGAATAATAATTTCTGGATCCCAAAAAAATTTCCTGTCTTAGAAACTACGACTTCAACTGAAAAGCTGTGAACTATACATAGACTTTTTAGCAAAACGGGATACGGACATATCTGGAACTGCATGATATCTACAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30644</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>101817</contig_pos>
        <strand>+</strand>
        <context>ACGGTACAAW[A/T]AGTTCAATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTCGTTGAATGAAGTATCAACTCAAAGTCTTCAAAAGGGACGGTACAAA</left_flank>
        <right_flank>AGTTCAATAATTACAAAACCGCAATTTCTTTTTTGTAGATGCTTCTTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGAAATCAGTACAATTTGTGCTGACGTGAAATTTGACGAAAATCATGATAATGTAACTCGAAACTCGTAGTCTATGATAATGTTTTAGGTCTAGATTTGAAAAGAATCTTAAAGCCACAAAATACAGAATATACAATAAAAGGAGATATGCTTGAATTCAACAGGGTGGCGCAAAATTACTGATAACAACGGGTATAACTTTAGACATTAGTATCTTGGAAGCATCAAAGTTGGTAGGAATATAATTTTACGTTTGATTCGAAGCTACTAAAATGTTCGAAGCGATTCCCCAAGTCTAGGTGTTATGATTGTTCAAAGACCAGTCGGTTGAGAAGGGGATATTAGGCTACAGTACACAAAAGAAGTGAAGACTACAAACCAATAAGAAAAATGTAAATTCACATTTAACAGTGTCAAGTGTAAGGAATCTTCCTAAAAAAATAGGTAGCTCGTTGAATGAAGTATCAACTCAAAGTCTTCAAAAGGGACGGTACAAAAAGTTCAATAATTACAAAACCGCAATTTCTTTTTTGTAGATGCTTCTTCAATCTGAAAGGAATAATAATTTCTGGATCCCAAAAAAATTTCCTGTCTTAGAAACTACGACTTCAACTGAAAAGCTGTGAACTATACATAGACTTTTTAGCAAAACGGGATACGGACATATCTGGAACTGCATGATATCTACAATTAATACGTCGATAATGGTACCTAACGAATATTCCATATCTTCTAAAACTCGATAGCTATCTGCTTTTCCTTCTAAAAGTCTTCCACTGACTCTCAAACCAGCTTTACAAAGATCACTGACCACACACCTAACACCCGTCGTCCTTCTCACGTGTCTTTCCCTTCTTCTCTCTTCTTTCTTAATTCTGACCTTTCAGTATAAATAAGATCCATCCCAGTGTACCCAGCTCATTCTTCTACACAGTTTTCCTTCGTCCTTTTTCTTGTTTCTATGATCTCTGTCTTTCATTTTTGCACCTACTTGTTTA</canonical>
            <polymorphic>TTGGAAATCAGTACAATTTGTGCTGACGTGAAATTTGACGAAAATCATGATAATGTAACTCGAAACTCGTAGTCTATGATAATGTTTTAGGTCTAGATTTGAAAAGAATCTTAAAGCCACAAAATACAGAATATACAATAAAAGGAGATATGCTTGAATTCAACAGGGTGGCGCAAAATTACTGATAACAACGGGTATAACTTTAGACATTAGTATCTTGGAAGCATCAAAGTTGGTAGGAATATAATTTTACGTTTGATTCGAAGCTACTAAAATGTTCGAAGCGATTCCCCAAGTCTAGGTGTTATGATTGTTCAAAGACCAGTCGGTTGAGAAGGGGATATTAGGCTACAGTACACAAAAGAAGTGAAGACTACAAACCAATAAGAAAAATGTAAATTCACATTTAACAGTGTCAAGTGTAAGGAATCTTCCTAAAAAAATAGGTAGCTCGTTGAATGAAGTATCAACTCAAAGTCTTCAAAAGGGACGGTACAAAWAGTTCAATAATTACAAAACCGCAATTTCTTTTTTGTAGATGCTTCTTCAATCTGAAAGGAATAATAATTTCTGGATCCCAAAAAAATTTCCTGTCTTAGAAACTACGACTTCAACTGAAAAGCTGTGAACTATACATAGACTTTTTAGCAAAACGGGATACGGACATATCTGGAACTGCATGATATCTACAATTAATACGTCGATAATGGTACCTAACGAATATTCCATATCTTCTAAAACTCGATAGCTATCTGCTTTTCCTTCTAAAAGTCTTCCACTGACTCTCAAACCAGCTTTACAAAGATCACTGACCACACACCTAACACCCGTCGTCCTTCTCACGTGTCTTTCCCTTCTTCTCTCTTCTTTCTTAATTCTGACCTTTCAGTATAAATAAGATCCATCCCAGTGTACCCAGCTCATTCTTCTACACAGTTTTCCTTCGTCCTTTTTCTTGTTTCTATGATCTCTGTCTTTCATTTTTGCACCTACTTGTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTAGCTCGTTGAATGAAGTAT</pcr_primer_p1>
		<pcr_primer_p2>AATTGTAGATATCATGCAGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTAGCTCGTTGAATGAAGTATCAACTCAAAGTCTTCAAAAGGGACGGTACAAAAAGTTCAATAATTACAAAACCGCAATTTCTTTTTTGTAGATGCTTCTTCAATCTGAAAGGAATAATAATTTCTGGATCCCAAAAAAATTTCCTGTCTTAGAAACTACGACTTCAACTGAAAAGCTGTGAACTATACATAGACTTTTTAGCAAAACGGGATACGGACATATCTGGAACTGCATGATATCTACAATT</canonical_amplicon>
		<polymorphic_amplicon>GGTAGCTCGTTGAATGAAGTATCAACTCAAAGTCTTCAAAAGGGACGGTACAAAWAGTTCAATAATTACAAAACCGCAATTTCTTTTTTGTAGATGCTTCTTCAATCTGAAAGGAATAATAATTTCTGGATCCCAAAAAAATTTCCTGTCTTAGAAACTACGACTTCAACTGAAAAGCTGTGAACTATACATAGACTTTTTAGCAAAACGGGATACGGACATATCTGGAACTGCATGATATCTACAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30645</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>106401</contig_pos>
        <strand>-</strand>
        <context>TGGACTATTG[G/T]CGAATACGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCAAAATTTTTCAATTTTCAGACTCTCTCTTCTGAATGTTGGACTATTG</left_flank>
        <right_flank>CGAATACGAAGTATTGCAAAAATTTGAGACAGAACTCGTAAATCTTCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGTAAGAGTTTCCGATATGCTCAGCTCAGACACTCTTGTTCGTGCCAAACTTCTGTTTTTGAATGTTCCTGGTCTTCCAACTGCTCATAAGAATATCATTTTGAATCTAATTAAAAAAGAGATTCGGGAGGATATTTCGATTCAAGATGTCGTTGTTGTCCCTCCAGGAAAATGGTTTCTCAATTTCTATCGTCCAGAAGATGCGTTGAAAGTTTTCAAAGTTTTCAACGGGTTCAATTATCGTGGACACACTTTGGTTGTCAGATTCTGTTATCCAGATGGAACGGTCAGTTCAAAAAAGTTCTAAATATTTTGAAAATTCTACTTTTCAGTACGGAGATGAGACAGCTCTGACTGAATTGGTCCAATGTAGCAACAATGCGAAAGGAAGACTTTTCGAGCAGAGAGAAATCGTTCAAGATGTAAAAAATGGATTTAGAATATTTATTCAAAATTTTTCAATTTTCAGACTCTCTCTTCTGAATGTTGGACTATTGCCGAATACGAAGTATTGCAAAAATTTGAGACAGAACTCGTAAATCTTCTGAAAACTCACGCCTATCTACCGTACCACAATGTTCTTCAATCGATGCGAACTCTTTTTTCAAATCGAATTCCTTCGGCCACATCTTCAATTTTCATTAGTGAAGCATTGACTCAATGGCCAACTGGATTCATTCGAATGTTCAATCGAAATGTCAAAGTGGTTTCGAATACAATGTGTCTGTCCACTAGCTCATATTACACTCAACGTATCATGATTCTGCAATGGAAGGTATCCTAGAATTTCAAAGTTTTTCAAATGAATATAGTTTTCAGGGGGCTGCTCTGTTCATCGCAATTCATGGGAGCCAATGGTTCCAGAAGACATTCGAAGTGATATTCAATTGATTCAATACATCCATTCATTCCTCGGACACTTTGGACCACAGAACATTGATGTTTGTATTCTTTATTAATTTTAGTAACTTTTAATTTTATTTTCAGATTGATGCTCC</canonical>
            <polymorphic>GATGTAAGAGTTTCCGATATGCTCAGCTCAGACACTCTTGTTCGTGCCAAACTTCTGTTTTTGAATGTTCCTGGTCTTCCAACTGCTCATAAGAATATCATTTTGAATCTAATTAAAAAAGAGATTCGGGAGGATATTTCGATTCAAGATGTCGTTGTTGTCCCTCCAGGAAAATGGTTTCTCAATTTCTATCGTCCAGAAGATGCGTTGAAAGTTTTCAAAGTTTTCAACGGGTTCAATTATCGTGGACACACTTTGGTTGTCAGATTCTGTTATCCAGATGGAACGGTCAGTTCAAAAAAGTTCTAAATATTTTGAAAATTCTACTTTTCAGTACGGAGATGAGACAGCTCTGACTGAATTGGTCCAATGTAGCAACAATGCGAAAGGAAGACTTTTCGAGCAGAGAGAAATCGTTCAAGATGTAAAAAATGGATTTAGAATATTTATTCAAAATTTTTCAATTTTCAGACTCTCTCTTCTGAATGTTGGACTATTGKCGAATACGAAGTATTGCAAAAATTTGAGACAGAACTCGTAAATCTTCTGAAAACTCACGCCTATCTACCGTACCACAATGTTCTTCAATCGATGCGAACTCTTTTTTCAAATCGAATTCCTTCGGCCACATCTTCAATTTTCATTAGTGAAGCATTGACTCAATGGCCAACTGGATTCATTCGAATGTTCAATCGAAATGTCAAAGTGGTTTCGAATACAATGTGTCTGTCCACTAGCTCATATTACACTCAACGTATCATGATTCTGCAATGGAAGGTATCCTAGAATTTCAAAGTTTTTCAAATGAATATAGTTTTCAGGGGGCTGCTCTGTTCATCGCAATTCATGGGAGCCAATGGTTCCAGAAGACATTCGAAGTGATATTCAATTGATTCAATACATCCATTCATTCCTCGGACACTTTGGACCACAGAACATTGATGTTTGTATTCTTTATTAATTTTAGTAACTTTTAATTTTATTTTCAGATTGATGCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAATCGTTCAAGATGTAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATGCTTCACTAATGAAAATTGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAGAAATCGTTCAAGATGTAAAAAATGGATTTAGAATATTTATTCAAAATTTTTCAATTTTCAGACTCTCTCTTCTGAATGTTGGACTATTGCCGAATACGAAGTATTGCAAAAATTTGAGACAGAACTCGTAAATCTTCTGAAAACTCACGCCTATCTACCGTACCACAATGTTCTTCAATCGATGCGAACTCTTTTTTCAAATCGAATTCCTTCGGCCACATCTTCAATTTTCATTAGTGAAGCATT</canonical_amplicon>
		<polymorphic_amplicon>GAGAAATCGTTCAAGATGTAAAAAATGGATTTAGAATATTTATTCAAAATTTTTCAATTTTCAGACTCTCTCTTCTGAATGTTGGACTATTGKCGAATACGAAGTATTGCAAAAATTTGAGACAGAACTCGTAAATCTTCTGAAAACTCACGCCTATCTACCGTACCACAATGTTCTTCAATCGATGCGAACTCTTTTTTCAAATCGAATTCCTTCGGCCACATCTTCAATTTTCATTAGTGAAGCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30646</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>106579</contig_pos>
        <strand>-</strand>
        <context>CAACTGGATT[G/T]ATTCGAATGT</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACATCTTCAATTTTCATTAGTGAAGCATTGACTCAATGGCCAACTGGATT</left_flank>
        <right_flank>ATTCGAATGTTCAATCGAAATGTCAAAGTGGTTTCGAATACAATGTGTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTCAATTTCTATCGTCCAGAAGATGCGTTGAAAGTTTTCAAAGTTTTCAACGGGTTCAATTATCGTGGACACACTTTGGTTGTCAGATTCTGTTATCCAGATGGAACGGTCAGTTCAAAAAAGTTCTAAATATTTTGAAAATTCTACTTTTCAGTACGGAGATGAGACAGCTCTGACTGAATTGGTCCAATGTAGCAACAATGCGAAAGGAAGACTTTTCGAGCAGAGAGAAATCGTTCAAGATGTAAAAAATGGATTTAGAATATTTATTCAAAATTTTTCAATTTTCAGACTCTCTCTTCTGAATGTTGGACTATTGCCGAATACGAAGTATTGCAAAAATTTGAGACAGAACTCGTAAATCTTCTGAAAACTCACGCCTATCTACCGTACCACAATGTTCTTCAATCGATGCGAACTCTTTTTTCAAATCGAATTCCTTCGGCCACATCTTCAATTTTCATTAGTGAAGCATTGACTCAATGGCCAACTGGATTCATTCGAATGTTCAATCGAAATGTCAAAGTGGTTTCGAATACAATGTGTCTGTCCACTAGCTCATATTACACTCAACGTATCATGATTCTGCAATGGAAGGTATCCTAGAATTTCAAAGTTTTTCAAATGAATATAGTTTTCAGGGGGCTGCTCTGTTCATCGCAATTCATGGGAGCCAATGGTTCCAGAAGACATTCGAAGTGATATTCAATTGATTCAATACATCCATTCATTCCTCGGACACTTTGGACCACAGAACATTGATGTTTGTATTCTTTATTAATTTTAGTAACTTTTAATTTTATTTTCAGATTGATGCTCCAATTCGTATTCTGGCTCAATCCCTCCGTGGAACTTGGCCAAAGTCTGCCGAAGAACTTGCTTCTCTACTCACTGATATTTCATCTGGAGTTGCTATTGTCAACCGTGTTTTATACTTGTCCAGTAACCCAGTTCATCATGAAAAAATCATTGACAATCTGGCGGTAATACCGATCTCT</canonical>
            <polymorphic>TTCTCAATTTCTATCGTCCAGAAGATGCGTTGAAAGTTTTCAAAGTTTTCAACGGGTTCAATTATCGTGGACACACTTTGGTTGTCAGATTCTGTTATCCAGATGGAACGGTCAGTTCAAAAAAGTTCTAAATATTTTGAAAATTCTACTTTTCAGTACGGAGATGAGACAGCTCTGACTGAATTGGTCCAATGTAGCAACAATGCGAAAGGAAGACTTTTCGAGCAGAGAGAAATCGTTCAAGATGTAAAAAATGGATTTAGAATATTTATTCAAAATTTTTCAATTTTCAGACTCTCTCTTCTGAATGTTGGACTATTGCCGAATACGAAGTATTGCAAAAATTTGAGACAGAACTCGTAAATCTTCTGAAAACTCACGCCTATCTACCGTACCACAATGTTCTTCAATCGATGCGAACTCTTTTTTCAAATCGAATTCCTTCGGCCACATCTTCAATTTTCATTAGTGAAGCATTGACTCAATGGCCAACTGGATTKATTCGAATGTTCAATCGAAATGTCAAAGTGGTTTCGAATACAATGTGTCTGTCCACTAGCTCATATTACACTCAACGTATCATGATTCTGCAATGGAAGGTATCCTAGAATTTCAAAGTTTTTCAAATGAATATAGTTTTCAGGGGGCTGCTCTGTTCATCGCAATTCATGGGAGCCAATGGTTCCAGAAGACATTCGAAGTGATATTCAATTGATTCAATACATCCATTCATTCCTCGGACACTTTGGACCACAGAACATTGATGTTTGTATTCTTTATTAATTTTAGTAACTTTTAATTTTATTTTCAGATTGATGCTCCAATTCGTATTCTGGCTCAATCCCTCCGTGGAACTTGGCCAAAGTCTGCCGAAGAACTTGCTTCTCTACTCACTGATATTTCATCTGGAGTTGCTATTGTCAACCGTGTTTTATACTTGTCCAGTAACCCAGTTCATCATGAAAAAATCATTGACAATCTGGCGGTAATACCGATCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>286 205 186 130 88 88 17</canonical_bands>
                <polymorphic_bands>286 205 186 130 105 88</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>408 286 130 88 88</canonical_bands>
                <polymorphic_bands>496 286 130 88</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTTGAGACAGAACTCGTA</pcr_primer_p1>
		<pcr_primer_p2>GAATCATGATACGTTGAGTGTAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTTGAGACAGAACTCGTAAATCTTCTGAAAACTCACGCCTATCTACCGTACCACAATGTTCTTCAATCGATGCGAACTCTTTTTTCAAATCGAATTCCTTCGGCCACATCTTCAATTTTCATTAGTGAAGCATTGACTCAATGGCCAACTGGATTCATTCGAATGTTCAATCGAAATGTCAAAGTGGTTTCGAATACAATGTGTCTGTCCACTAGCTCATATTACACTCAACGTATCATGATTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTTGAGACAGAACTCGTAAATCTTCTGAAAACTCACGCCTATCTACCGTACCACAATGTTCTTCAATCGATGCGAACTCTTTTTTCAAATCGAATTCCTTCGGCCACATCTTCAATTTTCATTAGTGAAGCATTGACTCAATGGCCAACTGGATTKATTCGAATGTTCAATCGAAATGTCAAAGTGGTTTCGAATACAATGTGTCTGTCCACTAGCTCATATTACACTCAACGTATCATGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30647</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>111704</contig_pos>
        <strand>+</strand>
        <context>TACACCGGAA[G/T]TTGAGCTGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGGGAATAGACAATTTCCTGGGTAGGCCATCGGATTCTGATACACCGGAA</left_flank>
        <right_flank>TTGAGCTGTAATAGATGAGTTCAGTTTCTAAATCAGATTCACATGACAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTCCGATTTCTGACATGCAGGTTTTGTTGTGCACATGGGCGGTTGCTGTAGTACAAGGAGCTGTATTTCCACAGCAATCCTTTCCAAGACGATGAAACCGACATTCTCCATCTGGTTCTGCTTCGGAAAACTGTTTGTAGCATCTGACACACTTCCGAATTGAATCTGAAGCATTTACGTTAAATACTGTACCTATGAAACCAGATCTCACCTCCCGGCTGAGCCCAACTATTCCAATCGGCTCTGCGGGCGGAAACATCGGGTTGACCCTGATTGTTGATGTGGACGAATCCATTTATTTTATGATTCTCAGGCGATAGTACGAGCCGAGAGAACATTTGGTAAGTTTCGAATTCTTGCACAGCTGCTGCATAAACCATTTGATCCTCTGAAGAGGAAATATAAGTTGAGTTTAAGAAGGATGTTAGCTGCTTTACCGTTTGAGAGTGGGAATAGACAATTTCCTGGGTAGGCCATCGGATTCTGATACACCGGAATTTGAGCTGTAATAGATGAGTTCAGTTTCTAAATCAGATTCACATGACAAACCCTGATAAGCTTGATGAGCTGCACTTTGGAAGATTGGAGCAACTCGCATTGGTGGTGCTTCTGAAAATAATATAATTCTAGTCGATTTGTTTTTAGTTGTTTTTTTTTGCAACTCACGATTTCGAAATGGAACCCAGTTTATAGTTGCAACCCAGCGCATCACGGGTTGAAGTAGATGTTCAGGATTCATCCTAAAAATATATTTAAAAAGTGTAGGGAATAGGAGAAACACAAGAAAAAACACTGAATTCAAAAAGACTGGAAAAGAAAGAACAAAAAATACACGAAGACACTTTTTTATGAAATTTTGGAATGGTTGCTACATGATTTTGGAATAAAAAGGGAAGATTGTAGAGACGCAGAGGCTCGTTTCCTTTTCTCGTTTTTTTTTGGCGAAGAGACCTTTTTCTTCTTTTTTTCATGTGAAACTGCCGGATGATGAAGAATAC</canonical>
            <polymorphic>CTTTCCGATTTCTGACATGCAGGTTTTGTTGTGCACATGGGCGGTTGCTGTAGTACAAGGAGCTGTATTTCCACAGCAATCCTTTCCAAGACGATGAAACCGACATTCTCCATCTGGTTCTGCTTCGGAAAACTGTTTGTAGCATCTGACACACTTCCGAATTGAATCTGAAGCATTTACGTTAAATACTGTACCTATGAAACCAGATCTCACCTCCCGGCTGAGCCCAACTATTCCAATCGGCTCTGCGGGCGGAAACATCGGGTTGACCCTGATTGTTGATGTGGACGAATCCATTTATTTTATGATTCTCAGGCGATAGTACGAGCCGAGAGAACATTTGGTAAGTTTCGAATTCTTGCACAGCTGCTGCATAAACCATTTGATCCTCTGAAGAGGAAATATAAGTTGAGTTTAAGAAGGATGTTAGCTGCTTTACCGTTTGAGAGTGGGAATAGACAATTTCCTGGGTAGGCCATCGGATTCTGATACACCGGAAKTTGAGCTGTAATAGATGAGTTCAGTTTCTAAATCAGATTCACATGACAAACCCTGATAAGCTTGATGAGCTGCACTTTGGAAGATTGGAGCAACTCGCATTGGTGGTGCTTCTGAAAATAATATAATTCTAGTCGATTTGTTTTTAGTTGTTTTTTTTTGCAACTCACGATTTCGAAATGGAACCCAGTTTATAGTTGCAACCCAGCGCATCACGGGTTGAAGTAGATGTTCAGGATTCATCCTAAAAATATATTTAAAAAGTGTAGGGAATAGGAGAAACACAAGAAAAAACACTGAATTCAAAAAGACTGGAAAAGAAAGAACAAAAAATACACGAAGACACTTTTTTATGAAATTTTGGAATGGTTGCTACATGATTTTGGAATAAAAAGGGAAGATTGTAGAGACGCAGAGGCTCGTTTCCTTTTCTCGTTTTTTTTTGGCGAAGAGACCTTTTTCTTCTTTTTTTCATGTGAAACTGCCGGATGATGAAGAATAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>353 300 146 144 57</canonical_bands>
                <polymorphic_bands>444 353 146 57</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>194 173 159 146 127 107 57 37</canonical_bands>
                <polymorphic_bands>194 173 164 159 146 107 57</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAGTTTAAGAAGGATGTTAGC</pcr_primer_p1>
		<pcr_primer_p2>AAACAACTAAAAACAAATCGACTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTGAGTTTAAGAAGGATGTTAGCTGCTTTACCGTTTGAGAGTGGGAATAGACAATTTCCTGGGTAGGCCATCGGATTCTGATACACCGGAATTTGAGCTGTAATAGATGAGTTCAGTTTCTAAATCAGATTCACATGACAAACCCTGATAAGCTTGATGAGCTGCACTTTGGAAGATTGGAGCAACTCGCATTGGTGGTGCTTCTGAAAATAATATAATTCTAGTCGATTTGTTTTTAGTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGAGTTTAAGAAGGATGTTAGCTGCTTTACCGTTTGAGAGTGGGAATAGACAATTTCCTGGGTAGGCCATCGGATTCTGATACACCGGAAKTTGAGCTGTAATAGATGAGTTCAGTTTCTAAATCAGATTCACATGACAAACCCTGATAAGCTTGATGAGCTGCACTTTGGAAGATTGGAGCAACTCGCATTGGTGGTGCTTCTGAAAATAATATAATTCTAGTCGATTTGTTTTTAGTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30650</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>114086</contig_pos>
        <strand></strand>
        <context>atctaattcc[A/G]cctaattGCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGATCAACTGATTCCACTGAGCCAGGGCCGAAGGCCCTGCATCTAATTCC</left_flank>
        <right_flank>CCTAATTGCGCGGCACAGCCGCGCCTAGCGGAGTCGGCCGTAGGCCGAGG</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGAGTGAAATGCTCGAAATTCCGACAGTCCAGCTTCAACCACTTGATACGCGAAAACCACTGAATGGATTCATCTGATTTTTTGCCTCCCTATGAAAGAAGATATCTAATTTCAATTTTTGTCTTCAGATTTTTTTCAGGTACGTTGGTACTTGAGATATAGGTAATAAACCACAAAAAACTTCGGAAAAAAATGAACAAAAATGTTTGTCAAAAATAAAATATCGTGAAAAATCTTTCGAAAATTTAGCCTCTAATGGAAAAGAAAAGATATCTACTGGTTCTAAATTTTTAGTCCTGATTCGGATAGAGAATTGAACCAGGGCCGCAGGCCCTGCAATCGATTCCACTCGATTTGAAACTTCTCATGTTACAGGGCCGACGGCCCTGTCCGGTCTGTTTGACCTGAGCGAGCGGAGCGAGCGAAGGGAGAACAGACTGAACCCTGGATCAACTGATTCCACTGAGCCAGGGCCGAAGGCCCTGCATCTAATTCCACCTAATTGCGCGGCACAGCCGCGCCTAGCGGAGTCGGCCGTAGGCCGAGGACGCTAGTCTCACTACTAAAAATGTAAAAAGTGTCGACTATGTTGAATTTCGATAAAAAATAGCAGAGATGTTGGAATCTCAATGATTCTACATTCATCATGATTTTTACTTATTTCTCATTAATTTATAAATGTTTACGTGAAAATTATTTATTTAGATCATTAATTATAAAAGAGAAAAAACACAAATTTAATGAAGAACACAGAAAGGAAGCCACTTCTTTTCTGTGCAGAAAAGAATAGACACGTAAAAGGTCAGAAAAGAAGAACCTTCCTTTCTGTGATTTTTCGGTGTGGGGGGAAATAGTTCAAATTATTCCTGACAAAAACGTGAACTTTAACTGCTGAGAGTTGAAGCTACTTTGGATGTGGACTTGAAACAAAAACTCGAGAAGGTGAATCTGAATGGTGAGTTTAAGGGATGGTGGTTTTGAAGACTGGCGCCATGCA</canonical>
            <polymorphic>TTTTGAGTGAAATGCTCGAAATTCCGACAGTCCAGCTTCAACCACTTGATACGCGAAAACCACTGAATGGATTCATCTGATTTTTTGCCTCCCTATGAAAGAAGATATCTAATTTCAATTTTTGTCTTCAGATTTTTTTCAGGTACGTTGGTACTTGAGATATAGGTAATAAACCACAAAAAACTTCGGAAAAAAATGAACAAAAATGTTTGTCAAAAATAAAATATCGTGAAAAATCTTTCGAAAATTTAGCCTCTAATGGAAAAGAAAAGATATCTACTGGTTCTAAATTTTTAGTCCTGATTCGGATAGAGAATTGAACCAGGGCCGCAGGCCCTGCAATCGATTCCACTCGATTTGAAACTTCTCATGTTACAGGGCCGACGGCCCTGTCCGGTCTGTTTGACCTGAGCGAGCGGAGCGAGCGAAGGGAGAACAGACTGAACCCTGGATCAACTGATTCCACTGAGCCAGGGCCGAAGGCCCTGCATCTAATTCCRCCTAATTGCGCGGCACAGCCGCGCCTAGCGGAGTCGGCCGTAGGCCGAGGACGCTAGTCTCACTACTAAAAATGTAAAAAGTGTCGACTATGTTGAATTTCGATAAAAAATAGCAGAGATGTTGGAATCTCAATGATTCTACATTCATCATGATTTTTACTTATTTCTCATTAATTTATAAATGTTTACGTGAAAATTATTTATTTAGATCATTAATTATAAAAGAGAAAAAACACAAATTTAATGAAGAACACAGAAAGGAAGCCACTTCTTTTCTGTGCAGAAAAGAATAGACACGTAAAAGGTCAGAAAAGAAGAACCTTCCTTTCTGTGATTTTTCGGTGTGGGGGGAAATAGTTCAAATTATTCCTGACAAAAACGTGAACTTTAACTGCTGAGAGTTGAAGCTACTTTGGATGTGGACTTGAAACAAAAACTCGAGAAGGTGAATCTGAATGGTGAGTTTAAGGGATGGTGGTTTTGAAGACTGGCGCCATGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>120 114 114 109 55 47 43 38 37 37 35 35 27 23 21 18 18 16 16 15 14 13 13 11 9 2</canonical_bands>
                <polymorphic_bands>120 114 114 109 55 50 47 43 38 37 37 35 27 23 21 18 18 16 16 14 13 13 11 9 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGGAGAACAGACTGAACC</pcr_primer_p1>
		<pcr_primer_p2>GAGAATTCACTTCCCAGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>683</pcr_amplicon_size>
		<canonical_amplicon>AAGGGAGAACAGACTGAACCCTGGATCAACTGATTCCACTGAGCCAGGGCCGAAGGCCCTGCATCTAATTCCACCTAATTGCGCGGCACAGCC</canonical_amplicon>
		<polymorphic_amplicon>AAGGGAGAACAGACTGAACCCTGGATCAACTGATTCCACTGAGCCAGGGCCGAAGGCCCTGCATCTAATTCCRCCTAATTGCGCGGCACAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30651</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>152573</contig_pos>
        <strand>+</strand>
        <context>TCCGTCACTT[G/T]TCAATCATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCAATTTTTTGAAAAGATTATCATTTTACCGCTCAAACTTCCGTCACTT</left_flank>
        <right_flank>TCAATCATTTCAGCCTTTCTCACTCTAAAATTTTATGATTCTGGAGGGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGTTCCAAAATGTTCAAAAGATCGAATTTTCTCTATTCAGAAACCATTGTCAGTATTTCCGGTTCAAGATCATTTCCATTTCAATTGAAAATTTGGGTTGAAAACTTTGAAAACACTTTTGTTATCATCCAACTCGTCTTTTCTTTCTTTTTCGAATGAGTTTCAATCAAGAACCACTGGTCTTGCTCACTCTTAGTTTCCGGATCTTGCCAATCTCTGTGGATCTGATACTTTGTAAAGTAGTTTCAGTGCACAGATCACTATAAACCTAAGCTCTTCCAGATAAACTCCTTTATTAATGAGAAAATTTCCTTGTTTTCCATACAAACCAAGTATTGTTCAAAAATAGAAAACAGAAAATTGGGGTTTCGGTCATTGGTCTAACATTTTTATCAGCAAAATTAATGACTCCAGAACCTCTTGACCATAAAAATTTGAGATAAGAATTTCAATTTTTTGAAAAGATTATCATTTTACCGCTCAAACTTCCGTCACTTTTCAATCATTTCAGCCTTTCTCACTCTAAAATTTTATGATTCTGGAGGGGCGGTGAAATACAGCTATAAAGCCACTATAAAACTGAGTCGAATGATACATTTTCAGCTGTCCCACATTCAATATTCCTCCTCTTTCTTCCCATGTTTAAATTCCGAGTTGGTCTTATGATTTTTCTCTCAATTATGGGATTTTTCTTTCAATTTAATCAAGGTCTCAACGGATTACAAATCTTTTGATCGAATGAAAAAAATGCTACTGTCTTCGAAACAAAAAGCTTCTCCTGCGACGTTCAGAGCCTTTCACACAGCTGCTCCCGCTCTCTGCGTCTCTCAGCTTCTCCTTGACTTTTCAAAGATGTCAGCTTTTTCTCCATGCCTGCGCCTAGTCTCAGATACTCTCTTGCACTTTTTAATGCAAAAGATTGAAAGTGCGAAAACTATTGACACAGGCCGCACAGTGGCTCTTGCCATTTTTTACTTTCGTTTTAATCATTTCTCGTT</canonical>
            <polymorphic>ATTGTTCCAAAATGTTCAAAAGATCGAATTTTCTCTATTCAGAAACCATTGTCAGTATTTCCGGTTCAAGATCATTTCCATTTCAATTGAAAATTTGGGTTGAAAACTTTGAAAACACTTTTGTTATCATCCAACTCGTCTTTTCTTTCTTTTTCGAATGAGTTTCAATCAAGAACCACTGGTCTTGCTCACTCTTAGTTTCCGGATCTTGCCAATCTCTGTGGATCTGATACTTTGTAAAGTAGTTTCAGTGCACAGATCACTATAAACCTAAGCTCTTCCAGATAAACTCCTTTATTAATGAGAAAATTTCCTTGTTTTCCATACAAACCAAGTATTGTTCAAAAATAGAAAACAGAAAATTGGGGTTTCGGTCATTGGTCTAACATTTTTATCAGCAAAATTAATGACTCCAGAACCTCTTGACCATAAAAATTTGAGATAAGAATTTCAATTTTTTGAAAAGATTATCATTTTACCGCTCAAACTTCCGTCACTTKTCAATCATTTCAGCCTTTCTCACTCTAAAATTTTATGATTCTGGAGGGGCGGTGAAATACAGCTATAAAGCCACTATAAAACTGAGTCGAATGATACATTTTCAGCTGTCCCACATTCAATATTCCTCCTCTTTCTTCCCATGTTTAAATTCCGAGTTGGTCTTATGATTTTTCTCTCAATTATGGGATTTTTCTTTCAATTTAATCAAGGTCTCAACGGATTACAAATCTTTTGATCGAATGAAAAAAATGCTACTGTCTTCGAAACAAAAAGCTTCTCCTGCGACGTTCAGAGCCTTTCACACAGCTGCTCCCGCTCTCTGCGTCTCTCAGCTTCTCCTTGACTTTTCAAAGATGTCAGCTTTTTCTCCATGCCTGCGCCTAGTCTCAGATACTCTCTTGCACTTTTTAATGCAAAAGATTGAAAGTGCGAAAACTATTGACACAGGCCGCACAGTGGCTCTTGCCATTTTTTACTTTCGTTTTAATCATTTCTCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTAATGACTCCAGAACCTC</pcr_primer_p1>
		<pcr_primer_p2>AATTTAAACATGGGAAGAAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAAATTAATGACTCCAGAACCTCTTGACCATAAAAATTTGAGATAAGAATTTCAATTTTTTGAAAAGATTATCATTTTACCGCTCAAACTTCCGTCACTTTTCAATCATTTCAGCCTTTCTCACTCTAAAATTTTATGATTCTGGAGGGGCGGTGAAATACAGCTATAAAGCCACTATAAAACTGAGTCGAATGATACATTTTCAGCTGTCCCACATTCAATATTCCTCCTCTTTCTTCCCATGTTTAAATT</canonical_amplicon>
		<polymorphic_amplicon>AAAATTAATGACTCCAGAACCTCTTGACCATAAAAATTTGAGATAAGAATTTCAATTTTTTGAAAAGATTATCATTTTACCGCTCAAACTTCCGTCACTTKTCAATCATTTCAGCCTTTCTCACTCTAAAATTTTATGATTCTGGAGGGGCGGTGAAATACAGCTATAAAGCCACTATAAAACTGAGTCGAATGATACATTTTCAGCTGTCCCACATTCAATATTCCTCCTCTTTCTTCCCATGTTTAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30652</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>194100</contig_pos>
        <strand>+</strand>
        <context>ACATCATCGG[C/T]CTATGTGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAGCCCGGTAGCAGAAAGAATACTGCTCGAAACGGGTGAACATCATCGG</left_flank>
        <right_flank>CTATGTGATTGAAGGCCTTTAACGGTTTGGAAGATGTCTATCCGTTGCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGTCTAGAAAAAACAGAACGAGCTAGGAATAATAGTTTCATATAGCAATCATATTTACACAAAGTGTTTCAAAAAAGGCAACAACGGGGGTTTCAAGCACATTTCTTCAGTGGCTGAAGTCAGTAAAAGTGGAAAAGGGACTCGTTTTGTATGTGTCGGTAGGAGAGGTGTATAAGGGTACAAAATAAAGACTAGTAATGTAGGAACAACAATAAATAGGTTTCACGATATAAACTTGTGAACAGGAAGAAATAAAACTTTGTGATGAGAGGGAAAATATAAGGAAGAGAGCACGAAATCGACCCGTTTAGTGTATGCTCGATGAGTTTTAGTGTCAATGAACAGCTAGAACGGGAGAAAAAAGAAAAACAACTAAATTAGTGACTAGAAACAACAGATATAACAATGGGCTACCGCAGAAGTAGTGTCTGGGAGATGTAATCAGCAAGAGCCCGGTAGCAGAAAGAATACTGCTCGAAACGGGTGAACATCATCGGTCTATGTGATTGAAGGCCTTTAACGGTTTGGAAGATGTCTATCCGTTGCTCAGCTTTCTGTCGAAGCATCAATAGAGATATACAGATGAAGATTCCGGTCTCCGATGAACCATTTCTGAAATTCGAAATTTATAGAAAGTCAATCGAAATCAATTGAACATACCTGCAATGAACAACAATAGGCGCTCGAGACTCAAGAAGATTACTCTGTCTCTGTAACACCAAACTGATCAGATTCATCAGACTGTTAGGTGATCTGGGGACAAGTGCTTCCGTGGGCCATGCTGTGTACGAGTACTGCGTCAGGTCTTGATTCGGAGATGTCGAATCTGCATTCTTCATGGTGTATGTCAAATGTCGAACGACAAAGTCTTGGTGTTGTTCCAGAGAAACACATGAAACGTCGATTGCATTTCGGCCTTCTTGGAAGTGACAATCGGTACCAGGTCCTTCGATCGGCCAGTACTTCAAACATATATAGTTAATAGAGATAAGGTGTTA</canonical>
            <polymorphic>CATGTCTAGAAAAAACAGAACGAGCTAGGAATAATAGTTTCATATAGCAATCATATTTACACAAAGTGTTTCAAAAAAGGCAACAACGGGGGTTTCAAGCACATTTCTTCAGTGGCTGAAGTCAGTAAAAGTGGAAAAGGGACTCGTTTTGTATGTGTCGGTAGGAGAGGTGTATAAGGGTACAAAATAAAGACTAGTAATGTAGGAACAACAATAAATAGGTTTCACGATATAAACTTGTGAACAGGAAGAAATAAAACTTTGTGATGAGAGGGAAAATATAAGGAAGAGAGCACGAAATCGACCCGTTTAGTGTATGCTCGATGAGTTTTAGTGTCAATGAACAGCTAGAACGGGAGAAAAAAGAAAAACAACTAAATTAGTGACTAGAAACAACAGATATAACAATGGGCTACCGCAGAAGTAGTGTCTGGGAGATGTAATCAGCAAGAGCCCGGTAGCAGAAAGAATACTGCTCGAAACGGGTGAACATCATCGGYCTATGTGATTGAAGGCCTTTAACGGTTTGGAAGATGTCTATCCGTTGCTCAGCTTTCTGTCGAAGCATCAATAGAGATATACAGATGAAGATTCCGGTCTCCGATGAACCATTTCTGAAATTCGAAATTTATAGAAAGTCAATCGAAATCAATTGAACATACCTGCAATGAACAACAATAGGCGCTCGAGACTCAAGAAGATTACTCTGTCTCTGTAACACCAAACTGATCAGATTCATCAGACTGTTAGGTGATCTGGGGACAAGTGCTTCCGTGGGCCATGCTGTGTACGAGTACTGCGTCAGGTCTTGATTCGGAGATGTCGAATCTGCATTCTTCATGGTGTATGTCAAATGTCGAACGACAAAGTCTTGGTGTTGTTCCAGAGAAACACATGAAACGTCGATTGCATTTCGGCCTTCTTGGAAGTGACAATCGGTACCAGGTCCTTCGATCGGCCAGTACTTCAAACATATATAGTTAATAGAGATAAGGTGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTAGTGTCTGGGAGATGTAA</pcr_primer_p1>
		<pcr_primer_p2>GCAGGTATGTTCAATTGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAGTAGTGTCTGGGAGATGTAATCAGCAAGAGCCCGGTAGCAGAAAGAATACTGCTCGAAACGGGTGAACATCATCGGTCTATGTGATTGAAGGCCTTTAACGGTTTGGAAGATGTCTATCCGTTGCTCAGCTTTCTGTCGAAGCATCAATAGAGATATACAGATGAAGATTCCGGTCTCCGATGAACCATTTCTGAAATTCGAAATTTATAGAAAGTCAATCGAAATCAATTGAACATACCTGC</canonical_amplicon>
		<polymorphic_amplicon>GAAGTAGTGTCTGGGAGATGTAATCAGCAAGAGCCCGGTAGCAGAAAGAATACTGCTCGAAACGGGTGAACATCATCGGYCTATGTGATTGAAGGCCTTTAACGGTTTGGAAGATGTCTATCCGTTGCTCAGCTTTCTGTCGAAGCATCAATAGAGATATACAGATGAAGATTCCGGTCTCCGATGAACCATTTCTGAAATTCGAAATTTATAGAAAGTCAATCGAAATCAATTGAACATACCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30653</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>194170</contig_pos>
        <strand>+</strand>
        <context>TCGAAGCATC[A/G]RTAGAGATAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAACGGTTTGGAAGATGTCTATCCGTTGCTCAGCTTTCTGTCGAAGCATC</left_flank>
        <right_flank>ATAGAGATATACAGATGAAGATTCCGGTCTCCGATGAACCATTTCTGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAAAAGGCAACAACGGGGGTTTCAAGCACATTTCTTCAGTGGCTGAAGTCAGTAAAAGTGGAAAAGGGACTCGTTTTGTATGTGTCGGTAGGAGAGGTGTATAAGGGTACAAAATAAAGACTAGTAATGTAGGAACAACAATAAATAGGTTTCACGATATAAACTTGTGAACAGGAAGAAATAAAACTTTGTGATGAGAGGGAAAATATAAGGAAGAGAGCACGAAATCGACCCGTTTAGTGTATGCTCGATGAGTTTTAGTGTCAATGAACAGCTAGAACGGGAGAAAAAAGAAAAACAACTAAATTAGTGACTAGAAACAACAGATATAACAATGGGCTACCGCAGAAGTAGTGTCTGGGAGATGTAATCAGCAAGAGCCCGGTAGCAGAAAGAATACTGCTCGAAACGGGTGAACATCATCGGTCTATGTGATTGAAGGCCTTTAACGGTTTGGAAGATGTCTATCCGTTGCTCAGCTTTCTGTCGAAGCATCAATAGAGATATACAGATGAAGATTCCGGTCTCCGATGAACCATTTCTGAAATTCGAAATTTATAGAAAGTCAATCGAAATCAATTGAACATACCTGCAATGAACAACAATAGGCGCTCGAGACTCAAGAAGATTACTCTGTCTCTGTAACACCAAACTGATCAGATTCATCAGACTGTTAGGTGATCTGGGGACAAGTGCTTCCGTGGGCCATGCTGTGTACGAGTACTGCGTCAGGTCTTGATTCGGAGATGTCGAATCTGCATTCTTCATGGTGTATGTCAAATGTCGAACGACAAAGTCTTGGTGTTGTTCCAGAGAAACACATGAAACGTCGATTGCATTTCGGCCTTCTTGGAAGTGACAATCGGTACCAGGTCCTTCGATCGGCCAGTACTTCAAACATATATAGTTAATAGAGATAAGGTGTTATCAAAAGCTTACCTTTTCTGAGTCACTCCAATCGTTTTCATCGCTTAACATCACCACTGTTGTCACCTTC</canonical>
            <polymorphic>TCAAAAAAGGCAACAACGGGGGTTTCAAGCACATTTCTTCAGTGGCTGAAGTCAGTAAAAGTGGAAAAGGGACTCGTTTTGTATGTGTCGGTAGGAGAGGTGTATAAGGGTACAAAATAAAGACTAGTAATGTAGGAACAACAATAAATAGGTTTCACGATATAAACTTGTGAACAGGAAGAAATAAAACTTTGTGATGAGAGGGAAAATATAAGGAAGAGAGCACGAAATCGACCCGTTTAGTGTATGCTCGATGAGTTTTAGTGTCAATGAACAGCTAGAACGGGAGAAAAAAGAAAAACAACTAAATTAGTGACTAGAAACAACAGATATAACAATGGGCTACCGCAGAAGTAGTGTCTGGGAGATGTAATCAGCAAGAGCCCGGTAGCAGAAAGAATACTGCTCGAAACGGGTGAACATCATCGGTCTATGTGATTGAAGGCCTTTAACGGTTTGGAAGATGTCTATCCGTTGCTCAGCTTTCTGTCGAAGCATCRATAGAGATATACAGATGAAGATTCCGGTCTCCGATGAACCATTTCTGAAATTCGAAATTTATAGAAAGTCAATCGAAATCAATTGAACATACCTGCAATGAACAACAATAGGCGCTCGAGACTCAAGAAGATTACTCTGTCTCTGTAACACCAAACTGATCAGATTCATCAGACTGTTAGGTGATCTGGGGACAAGTGCTTCCGTGGGCCATGCTGTGTACGAGTACTGCGTCAGGTCTTGATTCGGAGATGTCGAATCTGCATTCTTCATGGTGTATGTCAAATGTCGAACGACAAAGTCTTGGTGTTGTTCCAGAGAAACACATGAAACGTCGATTGCATTTCGGCCTTCTTGGAAGTGACAATCGGTACCAGGTCCTTCGATCGGCCAGTACTTCAAACATATATAGTTAATAGAGATAAGGTGTTATCAAAAGCTTACCTTTTCTGAGTCACTCCAATCGTTTTCATCGCTTAACATCACCACTGTTGTCACCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTAGTGTCTGGGAGATGTAA</pcr_primer_p1>
		<pcr_primer_p2>GCAGGTATGTTCAATTGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAGTAGTGTCTGGGAGATGTAATCAGCAAGAGCCCGGTAGCAGAAAGAATACTGCTCGAAACGGGTGAACATCATCGGTCTATGTGATTGAAGGCCTTTAACGGTTTGGAAGATGTCTATCCGTTGCTCAGCTTTCTGTCGAAGCATCAATAGAGATATACAGATGAAGATTCCGGTCTCCGATGAACCATTTCTGAAATTCGAAATTTATAGAAAGTCAATCGAAATCAATTGAACATACCTGC</canonical_amplicon>
		<polymorphic_amplicon>GAAGTAGTGTCTGGGAGATGTAATCAGCAAGAGCCCGGTAGCAGAAAGAATACTGCTCGAAACGGGTGAACATCATCGGTCTATGTGATTGAAGGCCTTTAACGGTTTGGAAGATGTCTATCCGTTGCTCAGCTTTCTGTCGAAGCATCRATAGAGATATACAGATGAAGATTCCGGTCTCCGATGAACCATTTCTGAAATTCGAAATTTATAGAAAGTCAATCGAAATCAATTGAACATACCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30654</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>194171</contig_pos>
        <strand>+</strand>
        <context>CGAAGCATCR[A/G]TAGAGATATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACGGTTTGGAAGATGTCTATCCGTTGCTCAGCTTTCTGTCGAAGCATCA</left_flank>
        <right_flank>TAGAGATATACAGATGAAGATTCCGGTCTCCGATGAACCATTTCTGAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAAAGGCAACAACGGGGGTTTCAAGCACATTTCTTCAGTGGCTGAAGTCAGTAAAAGTGGAAAAGGGACTCGTTTTGTATGTGTCGGTAGGAGAGGTGTATAAGGGTACAAAATAAAGACTAGTAATGTAGGAACAACAATAAATAGGTTTCACGATATAAACTTGTGAACAGGAAGAAATAAAACTTTGTGATGAGAGGGAAAATATAAGGAAGAGAGCACGAAATCGACCCGTTTAGTGTATGCTCGATGAGTTTTAGTGTCAATGAACAGCTAGAACGGGAGAAAAAAGAAAAACAACTAAATTAGTGACTAGAAACAACAGATATAACAATGGGCTACCGCAGAAGTAGTGTCTGGGAGATGTAATCAGCAAGAGCCCGGTAGCAGAAAGAATACTGCTCGAAACGGGTGAACATCATCGGTCTATGTGATTGAAGGCCTTTAACGGTTTGGAAGATGTCTATCCGTTGCTCAGCTTTCTGTCGAAGCATCAATAGAGATATACAGATGAAGATTCCGGTCTCCGATGAACCATTTCTGAAATTCGAAATTTATAGAAAGTCAATCGAAATCAATTGAACATACCTGCAATGAACAACAATAGGCGCTCGAGACTCAAGAAGATTACTCTGTCTCTGTAACACCAAACTGATCAGATTCATCAGACTGTTAGGTGATCTGGGGACAAGTGCTTCCGTGGGCCATGCTGTGTACGAGTACTGCGTCAGGTCTTGATTCGGAGATGTCGAATCTGCATTCTTCATGGTGTATGTCAAATGTCGAACGACAAAGTCTTGGTGTTGTTCCAGAGAAACACATGAAACGTCGATTGCATTTCGGCCTTCTTGGAAGTGACAATCGGTACCAGGTCCTTCGATCGGCCAGTACTTCAAACATATATAGTTAATAGAGATAAGGTGTTATCAAAAGCTTACCTTTTCTGAGTCACTCCAATCGTTTTCATCGCTTAACATCACCACTGTTGTCACCTTCT</canonical>
            <polymorphic>CAAAAAAGGCAACAACGGGGGTTTCAAGCACATTTCTTCAGTGGCTGAAGTCAGTAAAAGTGGAAAAGGGACTCGTTTTGTATGTGTCGGTAGGAGAGGTGTATAAGGGTACAAAATAAAGACTAGTAATGTAGGAACAACAATAAATAGGTTTCACGATATAAACTTGTGAACAGGAAGAAATAAAACTTTGTGATGAGAGGGAAAATATAAGGAAGAGAGCACGAAATCGACCCGTTTAGTGTATGCTCGATGAGTTTTAGTGTCAATGAACAGCTAGAACGGGAGAAAAAAGAAAAACAACTAAATTAGTGACTAGAAACAACAGATATAACAATGGGCTACCGCAGAAGTAGTGTCTGGGAGATGTAATCAGCAAGAGCCCGGTAGCAGAAAGAATACTGCTCGAAACGGGTGAACATCATCGGTCTATGTGATTGAAGGCCTTTAACGGTTTGGAAGATGTCTATCCGTTGCTCAGCTTTCTGTCGAAGCATCARTAGAGATATACAGATGAAGATTCCGGTCTCCGATGAACCATTTCTGAAATTCGAAATTTATAGAAAGTCAATCGAAATCAATTGAACATACCTGCAATGAACAACAATAGGCGCTCGAGACTCAAGAAGATTACTCTGTCTCTGTAACACCAAACTGATCAGATTCATCAGACTGTTAGGTGATCTGGGGACAAGTGCTTCCGTGGGCCATGCTGTGTACGAGTACTGCGTCAGGTCTTGATTCGGAGATGTCGAATCTGCATTCTTCATGGTGTATGTCAAATGTCGAACGACAAAGTCTTGGTGTTGTTCCAGAGAAACACATGAAACGTCGATTGCATTTCGGCCTTCTTGGAAGTGACAATCGGTACCAGGTCCTTCGATCGGCCAGTACTTCAAACATATATAGTTAATAGAGATAAGGTGTTATCAAAAGCTTACCTTTTCTGAGTCACTCCAATCGTTTTCATCGCTTAACATCACCACTGTTGTCACCTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTAGTGTCTGGGAGATGTAA</pcr_primer_p1>
		<pcr_primer_p2>GCAGGTATGTTCAATTGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAGTAGTGTCTGGGAGATGTAATCAGCAAGAGCCCGGTAGCAGAAAGAATACTGCTCGAAACGGGTGAACATCATCGGTCTATGTGATTGAAGGCCTTTAACGGTTTGGAAGATGTCTATCCGTTGCTCAGCTTTCTGTCGAAGCATCAATAGAGATATACAGATGAAGATTCCGGTCTCCGATGAACCATTTCTGAAATTCGAAATTTATAGAAAGTCAATCGAAATCAATTGAACATACCTGC</canonical_amplicon>
		<polymorphic_amplicon>GAAGTAGTGTCTGGGAGATGTAATCAGCAAGAGCCCGGTAGCAGAAAGAATACTGCTCGAAACGGGTGAACATCATCGGTCTATGTGATTGAAGGCCTTTAACGGTTTGGAAGATGTCTATCCGTTGCTCAGCTTTCTGTCGAAGCATCARTAGAGATATACAGATGAAGATTCCGGTCTCCGATGAACCATTTCTGAAATTCGAAATTTATAGAAAGTCAATCGAAATCAATTGAACATACCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30655</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>199737</contig_pos>
        <strand>+</strand>
        <context>CGTGACCATC[A/G]TTCCCACGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACTTACATGTTGGGCAACTTCTGGGACATAGGCAGATACCGTGACCATC</left_flank>
        <right_flank>TTCCCACGATGACAGACTCCGCCATTGACGCAATCTTGGTTCGATTCACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTAGATCGAATTAAGGTACACAGACAACGAGAGACGCCACGTCGTTTGCAATTAGTATCATTTGGAGTTTTCAGTTATATGGAAGGGAGTGAAGGAGATGCATCGGGGTAGATCGAAATGGAAAACACACAGACCGCTCAGTCAGTAAATCGCGCTCAACTTGTTTTCACTTCGCACGGTGAATTACAAAGAACAAAGAACGATGAACGAACAGTAACTGTAGGAGCAATCATATGGTTATCATCGACAGAAGATGGTGATGACGGTATAAGAATTCATAGATTAACTTTTTCTTACCATGTAACATGTTGGATCTCTCAAGTCGTACTTTGACCGATAGTCTTTATCCATCACAAGACAGGGGGCAGTAGATCGACGATTTCCACACCGCGGGGGCACAACTGGAAGCATGGGGTTATAGCGGGGAAATGGGATTAGGATATGGGAAACTTACATGTTGGGCAACTTCTGGGACATAGGCAGATACCGTGACCATCCTTCCCACGATGACAGACTCCGCCATTGACGCAATCTTGGTTCGATTCACATACATGGACACCTACAAAAACTACTTTATGACACTTTCTAGAATTTTCAAATTACCTAATTCTTTGGCAGTTTTTGGGGGTTTCGGTTCAATTTTAGTCGAGTTCCAATTATCGATATTATCCTTTGTTTTTTCATTTTCTGCACTTGATCTGAAACTGTTTCAAACGTAGATTCTAATTTCTATAATTTTTTTTTCAGAATCTTACAAATCTGCGGCTTGTAACAGCTCCGTCCTGAGGTATAAAAGTATGACAGTGGTCCACCAGATCCATCGATTTATCCGCATTTTTAATCAGGAGACGTCAATTTTAAAAGAGCATCATTTAGAAAGGGAGAGGAGAAGCGGTATTGAAGATGTATATTTGTTGATCGGAAATATTTAGATGTTTCTTCTCTTAGTCCTGAAACAGAACGACTTAAAATGTATTGGTAAAGGAAACTGGTCGAGA</canonical>
            <polymorphic>GAGTAGATCGAATTAAGGTACACAGACAACGAGAGACGCCACGTCGTTTGCAATTAGTATCATTTGGAGTTTTCAGTTATATGGAAGGGAGTGAAGGAGATGCATCGGGGTAGATCGAAATGGAAAACACACAGACCGCTCAGTCAGTAAATCGCGCTCAACTTGTTTTCACTTCGCACGGTGAATTACAAAGAACAAAGAACGATGAACGAACAGTAACTGTAGGAGCAATCATATGGTTATCATCGACAGAAGATGGTGATGACGGTATAAGAATTCATAGATTAACTTTTTCTTACCATGTAACATGTTGGATCTCTCAAGTCGTACTTTGACCGATAGTCTTTATCCATCACAAGACAGGGGGCAGTAGATCGACGATTTCCACACCGCGGGGGCACAACTGGAAGCATGGGGTTATAGCGGGGAAATGGGATTAGGATATGGGAAACTTACATGTTGGGCAACTTCTGGGACATAGGCAGATACCGTGACCATCRTTCCCACGATGACAGACTCCGCCATTGACGCAATCTTGGTTCGATTCACATACATGGACACCTACAAAAACTACTTTATGACACTTTCTAGAATTTTCAAATTACCTAATTCTTTGGCAGTTTTTGGGGGTTTCGGTTCAATTTTAGTCGAGTTCCAATTATCGATATTATCCTTTGTTTTTTCATTTTCTGCACTTGATCTGAAACTGTTTCAAACGTAGATTCTAATTTCTATAATTTTTTTTTCAGAATCTTACAAATCTGCGGCTTGTAACAGCTCCGTCCTGAGGTATAAAAGTATGACAGTGGTCCACCAGATCCATCGATTTATCCGCATTTTTAATCAGGAGACGTCAATTTTAAAAGAGCATCATTTAGAAAGGGAGAGGAGAAGCGGTATTGAAGATGTATATTTGTTGATCGGAAATATTTAGATGTTTCTTCTCTTAGTCCTGAAACAGAACGACTTAAAATGTATTGGTAAAGGAAACTGGTCGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTACTTTGACCGATAGTCTTTA</pcr_primer_p1>
		<pcr_primer_p2>GTAGTTTTTGTAGGTGTCCATGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGTACTTTGACCGATAGTCTTTATCCATCACAAGACAGGGGGCAGTAGATCGACGATTTCCACACCGCGGGGGCACAACTGGAAGCATGGGGTTATAGCGGGGAAATGGGATTAGGATATGGGAAACTTACATGTTGGGCAACTTCTGGGACATAGGCAGATACCGTGACCATCCTTCCCACGATGACAGACTCCGCCATTGACGCAATCTTGGTTCGATTCACATACATGGACACCTACAAAAACTAC</canonical_amplicon>
		<polymorphic_amplicon>CGTACTTTGACCGATAGTCTTTATCCATCACAAGACAGGGGGCAGTAGATCGACGATTTCCACACCGCGGGGGCACAACTGGAAGCATGGGGTTATAGCGGGGAAATGGGATTAGGATATGGGAAACTTACATGTTGGGCAACTTCTGGGACATAGGCAGATACCGTGACCATCRTTCCCACGATGACAGACTCCGCCATTGACGCAATCTTGGTTCGATTCACATACATGGACACCTACAAAAACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30656</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>245958</contig_pos>
        <strand>+</strand>
        <context>GAATGGGAAA[C/T]GGGAGTAAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCACGCATGGGGGAGATTTGTGCAGATGGATATTTATTAGGAATGGGAAA</left_flank>
        <right_flank>GGGAGTAAACAAAAATAGAAGAATTTAGTAGAAATTTTCGAATGGATCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACATTGAACAAATAGTACACTATTCAATCAATCAAACTTCCTATCACTGTCCACTGAAAGAACATAAAAAGAACTGAATCCTAAATGACATTAAACGACTTTTTTTTAAGAGCTAATACAAAAATAGGGTAGGGTTGATGACCGAGAAAATGGTGGCAGCTGTAAGAATGAGTAGATAACTCTCTCTCTCGGTGAAGGGGTCACGGGAGGGCGGAGTGTCCCCCCCCCCCCCCCTTCTTCCTTCAATTTGATGTAGATGGAGGGACAGGCAAGCCGAGGTCGGAACGAGAGCATCTGTTCGTTTTGTCTCGCACCTCTTCAGGCCACGCGCTATTTCTTTAAGCTGGTTATTAGTTCTAACCTACATTCACCCGTTCGTTTGGCATGCGAATGGGCTGGGTGGCAATAGGAATGGCAGAGAAAAAGGAGACGGATTAATTTGAGGAACGCACGCATGGGGGAGATTTGTGCAGATGGATATTTATTAGGAATGGGAAACGGGAGTAAACAAAAATAGAAGAATTTAGTAGAAATTTTCGAATGGATCCACGGTGGATGACCAGTTGGGAAGCTAAAAAGGTTGAAACTTGAAAAAAGAAACTTTAAAAAGACAGACAAGAAGTTTACCTTTTCATAAACCCTCTCACAGATTGCTCCATTCCTCTCCCAAACGATTCTTAGATTTCCATTATTCTGGATTTTTCTCGTCATTTTTGAAAAAATCGTTCCATCAGGTCCACATTGAGTGCTGATCAGTTTATTGTCTTCTAGCAAAAATTGAATTCCATCTCTATTTGGAAAAGGTAGAAAATGAAGATCCAAATTTTTCCTGCCATTATAAAAATTACATGTTTTCAATATTTTTCCTTTGAGACGGAAACAAATGTTTGAATAATGGATTCTTCTAGCTTCTTTCCAATTAATATCTGGTTGGGAATCAAGAAATGCATTGATGTTGGAGGAGCTCAAAAGTTTCCATTCTCCGTTTATTCCATCTTG</canonical>
            <polymorphic>GACATTGAACAAATAGTACACTATTCAATCAATCAAACTTCCTATCACTGTCCACTGAAAGAACATAAAAAGAACTGAATCCTAAATGACATTAAACGACTTTTTTTTAAGAGCTAATACAAAAATAGGGTAGGGTTGATGACCGAGAAAATGGTGGCAGCTGTAAGAATGAGTAGATAACTCTCTCTCTCGGTGAAGGGGTCACGGGAGGGCGGAGTGTCCCCCCCCCCCCCCCTTCTTCCTTCAATTTGATGTAGATGGAGGGACAGGCAAGCCGAGGTCGGAACGAGAGCATCTGTTCGTTTTGTCTCGCACCTCTTCAGGCCACGCGCTATTTCTTTAAGCTGGTTATTAGTTCTAACCTACATTCACCCGTTCGTTTGGCATGCGAATGGGCTGGGTGGCAATAGGAATGGCAGAGAAAAAGGAGACGGATTAATTTGAGGAACGCACGCATGGGGGAGATTTGTGCAGATGGATATTTATTAGGAATGGGAAAYGGGAGTAAACAAAAATAGAAGAATTTAGTAGAAATTTTCGAATGGATCCACGGTGGATGACCAGTTGGGAAGCTAAAAAGGTTGAAACTTGAAAAAAGAAACTTTAAAAAGACAGACAAGAAGTTTACCTTTTCATAAACCCTCTCACAGATTGCTCCATTCCTCTCCCAAACGATTCTTAGATTTCCATTATTCTGGATTTTTCTCGTCATTTTTGAAAAAATCGTTCCATCAGGTCCACATTGAGTGCTGATCAGTTTATTGTCTTCTAGCAAAAATTGAATTCCATCTCTATTTGGAAAAGGTAGAAAATGAAGATCCAAATTTTTCCTGCCATTATAAAAATTACATGTTTTCAATATTTTTCCTTTGAGACGGAAACAAATGTTTGAATAATGGATTCTTCTAGCTTCTTTCCAATTAATATCTGGTTGGGAATCAAGAAATGCATTGATGTTGGAGGAGCTCAAAAGTTTCCATTCTCCGTTTATTCCATCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGGAATGGCAGAGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>AGAGGGTTTATGAAAAGGTAAAC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ATAGGAATGGCAGAGAAAAAGGAGACGGATTAATTTGAGGAACGCACGCATGGGGGAGATTTGTGCAGATGGATATTTATTAGGAATGGGAAACGGGAGTAAACAAAAATAGAAGAATTTAGTAGAAATTTTCGAATGGATCCACGGTGGATGACCAGTTGGGAAGCTAAAAAGGTTGAAACTTGAAAAAAGAAACTTTAAAAAGACAGACAAGAAGTTTACCTTTTCATAAACCCTCT</canonical_amplicon>
		<polymorphic_amplicon>ATAGGAATGGCAGAGAAAAAGGAGACGGATTAATTTGAGGAACGCACGCATGGGGGAGATTTGTGCAGATGGATATTTATTAGGAATGGGAAAYGGGAGTAAACAAAAATAGAAGAATTTAGTAGAAATTTTCGAATGGATCCACGGTGGATGACCAGTTGGGAAGCTAAAAAGGTTGAAACTTGAAAAAAGAAACTTTAAAAAGACAGACAAGAAGTTTACCTTTTCATAAACCCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30657</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>245980</contig_pos>
        <strand>+</strand>
        <context>AAAATAGAAG[C/T]ATTTAGTAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGATGGATATTTATTAGGAATGGGAAACGGGAGTAAACAAAAATAGAAG</left_flank>
        <right_flank>ATTTAGTAGAAATTTTCGAATGGATCCACGGTGGATGACCAGTTGGGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCAATCAATCAAACTTCCTATCACTGTCCACTGAAAGAACATAAAAAGAACTGAATCCTAAATGACATTAAACGACTTTTTTTTAAGAGCTAATACAAAAATAGGGTAGGGTTGATGACCGAGAAAATGGTGGCAGCTGTAAGAATGAGTAGATAACTCTCTCTCTCGGTGAAGGGGTCACGGGAGGGCGGAGTGTCCCCCCCCCCCCCCCTTCTTCCTTCAATTTGATGTAGATGGAGGGACAGGCAAGCCGAGGTCGGAACGAGAGCATCTGTTCGTTTTGTCTCGCACCTCTTCAGGCCACGCGCTATTTCTTTAAGCTGGTTATTAGTTCTAACCTACATTCACCCGTTCGTTTGGCATGCGAATGGGCTGGGTGGCAATAGGAATGGCAGAGAAAAAGGAGACGGATTAATTTGAGGAACGCACGCATGGGGGAGATTTGTGCAGATGGATATTTATTAGGAATGGGAAACGGGAGTAAACAAAAATAGAAGAATTTAGTAGAAATTTTCGAATGGATCCACGGTGGATGACCAGTTGGGAAGCTAAAAAGGTTGAAACTTGAAAAAAGAAACTTTAAAAAGACAGACAAGAAGTTTACCTTTTCATAAACCCTCTCACAGATTGCTCCATTCCTCTCCCAAACGATTCTTAGATTTCCATTATTCTGGATTTTTCTCGTCATTTTTGAAAAAATCGTTCCATCAGGTCCACATTGAGTGCTGATCAGTTTATTGTCTTCTAGCAAAAATTGAATTCCATCTCTATTTGGAAAAGGTAGAAAATGAAGATCCAAATTTTTCCTGCCATTATAAAAATTACATGTTTTCAATATTTTTCCTTTGAGACGGAAACAAATGTTTGAATAATGGATTCTTCTAGCTTCTTTCCAATTAATATCTGGTTGGGAATCAAGAAATGCATTGATGTTGGAGGAGCTCAAAAGTTTCCATTCTCCGTTTATTCCATCTTGAATAGATGGATTCTGAAAATAA</canonical>
            <polymorphic>ATTCAATCAATCAAACTTCCTATCACTGTCCACTGAAAGAACATAAAAAGAACTGAATCCTAAATGACATTAAACGACTTTTTTTTAAGAGCTAATACAAAAATAGGGTAGGGTTGATGACCGAGAAAATGGTGGCAGCTGTAAGAATGAGTAGATAACTCTCTCTCTCGGTGAAGGGGTCACGGGAGGGCGGAGTGTCCCCCCCCCCCCCCCTTCTTCCTTCAATTTGATGTAGATGGAGGGACAGGCAAGCCGAGGTCGGAACGAGAGCATCTGTTCGTTTTGTCTCGCACCTCTTCAGGCCACGCGCTATTTCTTTAAGCTGGTTATTAGTTCTAACCTACATTCACCCGTTCGTTTGGCATGCGAATGGGCTGGGTGGCAATAGGAATGGCAGAGAAAAAGGAGACGGATTAATTTGAGGAACGCACGCATGGGGGAGATTTGTGCAGATGGATATTTATTAGGAATGGGAAACGGGAGTAAACAAAAATAGAAGYATTTAGTAGAAATTTTCGAATGGATCCACGGTGGATGACCAGTTGGGAAGCTAAAAAGGTTGAAACTTGAAAAAAGAAACTTTAAAAAGACAGACAAGAAGTTTACCTTTTCATAAACCCTCTCACAGATTGCTCCATTCCTCTCCCAAACGATTCTTAGATTTCCATTATTCTGGATTTTTCTCGTCATTTTTGAAAAAATCGTTCCATCAGGTCCACATTGAGTGCTGATCAGTTTATTGTCTTCTAGCAAAAATTGAATTCCATCTCTATTTGGAAAAGGTAGAAAATGAAGATCCAAATTTTTCCTGCCATTATAAAAATTACATGTTTTCAATATTTTTCCTTTGAGACGGAAACAAATGTTTGAATAATGGATTCTTCTAGCTTCTTTCCAATTAATATCTGGTTGGGAATCAAGAAATGCATTGATGTTGGAGGAGCTCAAAAGTTTCCATTCTCCGTTTATTCCATCTTGAATAGATGGATTCTGAAAATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>499 249 200 41 11</canonical_bands>
                <polymorphic_bands>510 249 200 41</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>244 223 192 104 84 75 41 21 11 5</canonical_bands>
                <polymorphic_bands>244 223 192 104 95 75 41 21 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATTTGTGCAGATGGATATTTA</pcr_primer_p1>
		<pcr_primer_p2>ATGACGAGAAAAATCCAGAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGATTTGTGCAGATGGATATTTATTAGGAATGGGAAACGGGAGTAAACAAAAATAGAAGAATTTAGTAGAAATTTTCGAATGGATCCACGGTGGATGACCAGTTGGGAAGCTAAAAAGGTTGAAACTTGAAAAAAGAAACTTTAAAAAGACAGACAAGAAGTTTACCTTTTCATAAACCCTCTCACAGATTGCTCCATTCCTCTCCCAAACGATTCTTAGATTTCCATTATTCTGGATTTTTCTCGTCAT</canonical_amplicon>
		<polymorphic_amplicon>AGATTTGTGCAGATGGATATTTATTAGGAATGGGAAACGGGAGTAAACAAAAATAGAAGYATTTAGTAGAAATTTTCGAATGGATCCACGGTGGATGACCAGTTGGGAAGCTAAAAAGGTTGAAACTTGAAAAAAGAAACTTTAAAAAGACAGACAAGAAGTTTACCTTTTCATAAACCCTCTCACAGATTGCTCCATTCCTCTCCCAAACGATTCTTAGATTTCCATTATTCTGGATTTTTCTCGTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30658</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>245997</contig_pos>
        <strand>+</strand>
        <context>TAGAAATTTT[C/T]GAATGGATCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAATGGGAAACGGGAGTAAACAAAAATAGAAGAATTTAGTAGAAATTTT</left_flank>
        <right_flank>GAATGGATCCACGGTGGATGACCAGTTGGGAAGCTAAAAAGGTTGAAACT</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTATCACTGTCCACTGAAAGAACATAAAAAGAACTGAATCCTAAATGACATTAAACGACTTTTTTTTAAGAGCTAATACAAAAATAGGGTAGGGTTGATGACCGAGAAAATGGTGGCAGCTGTAAGAATGAGTAGATAACTCTCTCTCTCGGTGAAGGGGTCACGGGAGGGCGGAGTGTCCCCCCCCCCCCCCCTTCTTCCTTCAATTTGATGTAGATGGAGGGACAGGCAAGCCGAGGTCGGAACGAGAGCATCTGTTCGTTTTGTCTCGCACCTCTTCAGGCCACGCGCTATTTCTTTAAGCTGGTTATTAGTTCTAACCTACATTCACCCGTTCGTTTGGCATGCGAATGGGCTGGGTGGCAATAGGAATGGCAGAGAAAAAGGAGACGGATTAATTTGAGGAACGCACGCATGGGGGAGATTTGTGCAGATGGATATTTATTAGGAATGGGAAACGGGAGTAAACAAAAATAGAAGAATTTAGTAGAAATTTTCGAATGGATCCACGGTGGATGACCAGTTGGGAAGCTAAAAAGGTTGAAACTTGAAAAAAGAAACTTTAAAAAGACAGACAAGAAGTTTACCTTTTCATAAACCCTCTCACAGATTGCTCCATTCCTCTCCCAAACGATTCTTAGATTTCCATTATTCTGGATTTTTCTCGTCATTTTTGAAAAAATCGTTCCATCAGGTCCACATTGAGTGCTGATCAGTTTATTGTCTTCTAGCAAAAATTGAATTCCATCTCTATTTGGAAAAGGTAGAAAATGAAGATCCAAATTTTTCCTGCCATTATAAAAATTACATGTTTTCAATATTTTTCCTTTGAGACGGAAACAAATGTTTGAATAATGGATTCTTCTAGCTTCTTTCCAATTAATATCTGGTTGGGAATCAAGAAATGCATTGATGTTGGAGGAGCTCAAAAGTTTCCATTCTCCGTTTATTCCATCTTGAATAGATGGATTCTGAAAATAAACTTTCAATTGAAAATA</canonical>
            <polymorphic>TCCTATCACTGTCCACTGAAAGAACATAAAAAGAACTGAATCCTAAATGACATTAAACGACTTTTTTTTAAGAGCTAATACAAAAATAGGGTAGGGTTGATGACCGAGAAAATGGTGGCAGCTGTAAGAATGAGTAGATAACTCTCTCTCTCGGTGAAGGGGTCACGGGAGGGCGGAGTGTCCCCCCCCCCCCCCCTTCTTCCTTCAATTTGATGTAGATGGAGGGACAGGCAAGCCGAGGTCGGAACGAGAGCATCTGTTCGTTTTGTCTCGCACCTCTTCAGGCCACGCGCTATTTCTTTAAGCTGGTTATTAGTTCTAACCTACATTCACCCGTTCGTTTGGCATGCGAATGGGCTGGGTGGCAATAGGAATGGCAGAGAAAAAGGAGACGGATTAATTTGAGGAACGCACGCATGGGGGAGATTTGTGCAGATGGATATTTATTAGGAATGGGAAACGGGAGTAAACAAAAATAGAAGAATTTAGTAGAAATTTTYGAATGGATCCACGGTGGATGACCAGTTGGGAAGCTAAAAAGGTTGAAACTTGAAAAAAGAAACTTTAAAAAGACAGACAAGAAGTTTACCTTTTCATAAACCCTCTCACAGATTGCTCCATTCCTCTCCCAAACGATTCTTAGATTTCCATTATTCTGGATTTTTCTCGTCATTTTTGAAAAAATCGTTCCATCAGGTCCACATTGAGTGCTGATCAGTTTATTGTCTTCTAGCAAAAATTGAATTCCATCTCTATTTGGAAAAGGTAGAAAATGAAGATCCAAATTTTTCCTGCCATTATAAAAATTACATGTTTTCAATATTTTTCCTTTGAGACGGAAACAAATGTTTGAATAATGGATTCTTCTAGCTTCTTTCCAATTAATATCTGGTTGGGAATCAAGAAATGCATTGATGTTGGAGGAGCTCAAAAGTTTCCATTCTCCGTTTATTCCATCTTGAATAGATGGATTCTGAAAATAAACTTTCAATTGAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATTTGTGCAGATGGATATTTA</pcr_primer_p1>
		<pcr_primer_p2>ATGACGAGAAAAATCCAGAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGATTTGTGCAGATGGATATTTATTAGGAATGGGAAACGGGAGTAAACAAAAATAGAAGAATTTAGTAGAAATTTTCGAATGGATCCACGGTGGATGACCAGTTGGGAAGCTAAAAAGGTTGAAACTTGAAAAAAGAAACTTTAAAAAGACAGACAAGAAGTTTACCTTTTCATAAACCCTCTCACAGATTGCTCCATTCCTCTCCCAAACGATTCTTAGATTTCCATTATTCTGGATTTTTCTCGTCAT</canonical_amplicon>
		<polymorphic_amplicon>AGATTTGTGCAGATGGATATTTATTAGGAATGGGAAACGGGAGTAAACAAAAATAGAAGAATTTAGTAGAAATTTTYGAATGGATCCACGGTGGATGACCAGTTGGGAAGCTAAAAAGGTTGAAACTTGAAAAAAGAAACTTTAAAAAGACAGACAAGAAGTTTACCTTTTCATAAACCCTCTCACAGATTGCTCCATTCCTCTCCCAAACGATTCTTAGATTTCCATTATTCTGGATTTTTCTCGTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30659</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>246008</contig_pos>
        <strand>+</strand>
        <context>GAATGGATCC[A/T]CGGTGGATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGGGAGTAAACAAAAATAGAAGAATTTAGTAGAAATTTTCGAATGGATCC</left_flank>
        <right_flank>CGGTGGATGACCAGTTGGGAAGCTAAAAAGGTTGAAACTTGAAAAAAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCACTGAAAGAACATAAAAAGAACTGAATCCTAAATGACATTAAACGACTTTTTTTTAAGAGCTAATACAAAAATAGGGTAGGGTTGATGACCGAGAAAATGGTGGCAGCTGTAAGAATGAGTAGATAACTCTCTCTCTCGGTGAAGGGGTCACGGGAGGGCGGAGTGTCCCCCCCCCCCCCCCTTCTTCCTTCAATTTGATGTAGATGGAGGGACAGGCAAGCCGAGGTCGGAACGAGAGCATCTGTTCGTTTTGTCTCGCACCTCTTCAGGCCACGCGCTATTTCTTTAAGCTGGTTATTAGTTCTAACCTACATTCACCCGTTCGTTTGGCATGCGAATGGGCTGGGTGGCAATAGGAATGGCAGAGAAAAAGGAGACGGATTAATTTGAGGAACGCACGCATGGGGGAGATTTGTGCAGATGGATATTTATTAGGAATGGGAAACGGGAGTAAACAAAAATAGAAGAATTTAGTAGAAATTTTCGAATGGATCCACGGTGGATGACCAGTTGGGAAGCTAAAAAGGTTGAAACTTGAAAAAAGAAACTTTAAAAAGACAGACAAGAAGTTTACCTTTTCATAAACCCTCTCACAGATTGCTCCATTCCTCTCCCAAACGATTCTTAGATTTCCATTATTCTGGATTTTTCTCGTCATTTTTGAAAAAATCGTTCCATCAGGTCCACATTGAGTGCTGATCAGTTTATTGTCTTCTAGCAAAAATTGAATTCCATCTCTATTTGGAAAAGGTAGAAAATGAAGATCCAAATTTTTCCTGCCATTATAAAAATTACATGTTTTCAATATTTTTCCTTTGAGACGGAAACAAATGTTTGAATAATGGATTCTTCTAGCTTCTTTCCAATTAATATCTGGTTGGGAATCAAGAAATGCATTGATGTTGGAGGAGCTCAAAAGTTTCCATTCTCCGTTTATTCCATCTTGAATAGATGGATTCTGAAAATAAACTTTCAATTGAAAATAGTTTTTTCTGG</canonical>
            <polymorphic>TCCACTGAAAGAACATAAAAAGAACTGAATCCTAAATGACATTAAACGACTTTTTTTTAAGAGCTAATACAAAAATAGGGTAGGGTTGATGACCGAGAAAATGGTGGCAGCTGTAAGAATGAGTAGATAACTCTCTCTCTCGGTGAAGGGGTCACGGGAGGGCGGAGTGTCCCCCCCCCCCCCCCTTCTTCCTTCAATTTGATGTAGATGGAGGGACAGGCAAGCCGAGGTCGGAACGAGAGCATCTGTTCGTTTTGTCTCGCACCTCTTCAGGCCACGCGCTATTTCTTTAAGCTGGTTATTAGTTCTAACCTACATTCACCCGTTCGTTTGGCATGCGAATGGGCTGGGTGGCAATAGGAATGGCAGAGAAAAAGGAGACGGATTAATTTGAGGAACGCACGCATGGGGGAGATTTGTGCAGATGGATATTTATTAGGAATGGGAAACGGGAGTAAACAAAAATAGAAGAATTTAGTAGAAATTTTCGAATGGATCCWCGGTGGATGACCAGTTGGGAAGCTAAAAAGGTTGAAACTTGAAAAAAGAAACTTTAAAAAGACAGACAAGAAGTTTACCTTTTCATAAACCCTCTCACAGATTGCTCCATTCCTCTCCCAAACGATTCTTAGATTTCCATTATTCTGGATTTTTCTCGTCATTTTTGAAAAAATCGTTCCATCAGGTCCACATTGAGTGCTGATCAGTTTATTGTCTTCTAGCAAAAATTGAATTCCATCTCTATTTGGAAAAGGTAGAAAATGAAGATCCAAATTTTTCCTGCCATTATAAAAATTACATGTTTTCAATATTTTTCCTTTGAGACGGAAACAAATGTTTGAATAATGGATTCTTCTAGCTTCTTTCCAATTAATATCTGGTTGGGAATCAAGAAATGCATTGATGTTGGAGGAGCTCAAAAGTTTCCATTCTCCGTTTATTCCATCTTGAATAGATGGATTCTGAAAATAAACTTTCAATTGAAAATAGTTTTTTCTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>301 102 95 93 92 79 49 44 39 32 19 15 13 9 9 5 4</canonical_bands>
                <polymorphic_bands>301 102 95 93 92 84 49 44 39 32 19 15 13 9 9 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATTTGTGCAGATGGATATTTA</pcr_primer_p1>
		<pcr_primer_p2>ATGACGAGAAAAATCCAGAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGATTTGTGCAGATGGATATTTATTAGGAATGGGAAACGGGAGTAAACAAAAATAGAAGAATTTAGTAGAAATTTTCGAATGGATCCACGGTGGATGACCAGTTGGGAAGCTAAAAAGGTTGAAACTTGAAAAAAGAAACTTTAAAAAGACAGACAAGAAGTTTACCTTTTCATAAACCCTCTCACAGATTGCTCCATTCCTCTCCCAAACGATTCTTAGATTTCCATTATTCTGGATTTTTCTCGTCAT</canonical_amplicon>
		<polymorphic_amplicon>AGATTTGTGCAGATGGATATTTATTAGGAATGGGAAACGGGAGTAAACAAAAATAGAAGAATTTAGTAGAAATTTTCGAATGGATCCWCGGTGGATGACCAGTTGGGAAGCTAAAAAGGTTGAAACTTGAAAAAAGAAACTTTAAAAAGACAGACAAGAAGTTTACCTTTTCATAAACCCTCTCACAGATTGCTCCATTCCTCTCCCAAACGATTCTTAGATTTCCATTATTCTGGATTTTTCTCGTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30660</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>246033</contig_pos>
        <strand>+</strand>
        <context>TTGGGAAGCT[A/G]AAAAGGTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAGTAGAAATTTTCGAATGGATCCACGGTGGATGACCAGTTGGGAAGCT</left_flank>
        <right_flank>AAAAGGTTGAAACTTGAAAAAAGAAACTTTAAAAAGACAGACAAGAAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAATCCTAAATGACATTAAACGACTTTTTTTTAAGAGCTAATACAAAAATAGGGTAGGGTTGATGACCGAGAAAATGGTGGCAGCTGTAAGAATGAGTAGATAACTCTCTCTCTCGGTGAAGGGGTCACGGGAGGGCGGAGTGTCCCCCCCCCCCCCCCTTCTTCCTTCAATTTGATGTAGATGGAGGGACAGGCAAGCCGAGGTCGGAACGAGAGCATCTGTTCGTTTTGTCTCGCACCTCTTCAGGCCACGCGCTATTTCTTTAAGCTGGTTATTAGTTCTAACCTACATTCACCCGTTCGTTTGGCATGCGAATGGGCTGGGTGGCAATAGGAATGGCAGAGAAAAAGGAGACGGATTAATTTGAGGAACGCACGCATGGGGGAGATTTGTGCAGATGGATATTTATTAGGAATGGGAAACGGGAGTAAACAAAAATAGAAGAATTTAGTAGAAATTTTCGAATGGATCCACGGTGGATGACCAGTTGGGAAGCTAAAAAGGTTGAAACTTGAAAAAAGAAACTTTAAAAAGACAGACAAGAAGTTTACCTTTTCATAAACCCTCTCACAGATTGCTCCATTCCTCTCCCAAACGATTCTTAGATTTCCATTATTCTGGATTTTTCTCGTCATTTTTGAAAAAATCGTTCCATCAGGTCCACATTGAGTGCTGATCAGTTTATTGTCTTCTAGCAAAAATTGAATTCCATCTCTATTTGGAAAAGGTAGAAAATGAAGATCCAAATTTTTCCTGCCATTATAAAAATTACATGTTTTCAATATTTTTCCTTTGAGACGGAAACAAATGTTTGAATAATGGATTCTTCTAGCTTCTTTCCAATTAATATCTGGTTGGGAATCAAGAAATGCATTGATGTTGGAGGAGCTCAAAAGTTTCCATTCTCCGTTTATTCCATCTTGAATAGATGGATTCTGAAAATAAACTTTCAATTGAAAATAGTTTTTTCTGGAGCTTATTGGAATTTTGGAAGCTCC</canonical>
            <polymorphic>TGAATCCTAAATGACATTAAACGACTTTTTTTTAAGAGCTAATACAAAAATAGGGTAGGGTTGATGACCGAGAAAATGGTGGCAGCTGTAAGAATGAGTAGATAACTCTCTCTCTCGGTGAAGGGGTCACGGGAGGGCGGAGTGTCCCCCCCCCCCCCCCTTCTTCCTTCAATTTGATGTAGATGGAGGGACAGGCAAGCCGAGGTCGGAACGAGAGCATCTGTTCGTTTTGTCTCGCACCTCTTCAGGCCACGCGCTATTTCTTTAAGCTGGTTATTAGTTCTAACCTACATTCACCCGTTCGTTTGGCATGCGAATGGGCTGGGTGGCAATAGGAATGGCAGAGAAAAAGGAGACGGATTAATTTGAGGAACGCACGCATGGGGGAGATTTGTGCAGATGGATATTTATTAGGAATGGGAAACGGGAGTAAACAAAAATAGAAGAATTTAGTAGAAATTTTCGAATGGATCCACGGTGGATGACCAGTTGGGAAGCTRAAAAGGTTGAAACTTGAAAAAAGAAACTTTAAAAAGACAGACAAGAAGTTTACCTTTTCATAAACCCTCTCACAGATTGCTCCATTCCTCTCCCAAACGATTCTTAGATTTCCATTATTCTGGATTTTTCTCGTCATTTTTGAAAAAATCGTTCCATCAGGTCCACATTGAGTGCTGATCAGTTTATTGTCTTCTAGCAAAAATTGAATTCCATCTCTATTTGGAAAAGGTAGAAAATGAAGATCCAAATTTTTCCTGCCATTATAAAAATTACATGTTTTCAATATTTTTCCTTTGAGACGGAAACAAATGTTTGAATAATGGATTCTTCTAGCTTCTTTCCAATTAATATCTGGTTGGGAATCAAGAAATGCATTGATGTTGGAGGAGCTCAAAAGTTTCCATTCTCCGTTTATTCCATCTTGAATAGATGGATTCTGAAAATAAACTTTCAATTGAAAATAGTTTTTTCTGGAGCTTATTGGAATTTTGGAAGCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATTTGTGCAGATGGATATTTA</pcr_primer_p1>
		<pcr_primer_p2>ATGACGAGAAAAATCCAGAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGATTTGTGCAGATGGATATTTATTAGGAATGGGAAACGGGAGTAAACAAAAATAGAAGAATTTAGTAGAAATTTTCGAATGGATCCACGGTGGATGACCAGTTGGGAAGCTAAAAAGGTTGAAACTTGAAAAAAGAAACTTTAAAAAGACAGACAAGAAGTTTACCTTTTCATAAACCCTCTCACAGATTGCTCCATTCCTCTCCCAAACGATTCTTAGATTTCCATTATTCTGGATTTTTCTCGTCAT</canonical_amplicon>
		<polymorphic_amplicon>AGATTTGTGCAGATGGATATTTATTAGGAATGGGAAACGGGAGTAAACAAAAATAGAAGAATTTAGTAGAAATTTTCGAATGGATCCACGGTGGATGACCAGTTGGGAAGCTRAAAAGGTTGAAACTTGAAAAAAGAAACTTTAAAAAGACAGACAAGAAGTTTACCTTTTCATAAACCCTCTCACAGATTGCTCCATTCCTCTCCCAAACGATTCTTAGATTTCCATTATTCTGGATTTTTCTCGTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30661</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>252037</contig_pos>
        <strand></strand>
        <context>ACGGAGCTGC[C/G]AAGCAATTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AACAACGACCGTATCACCGTCGAGTGGACCAACACCCCAGACGGAGCTGC</left_flank>
        <right_flank>AAGCAATTCCGCCGCGAGTGGTTCCAGGGAGACGGTATGGTTCGTCGCAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACGTGAACTTCCAGCTCTTTTTCTCATCAGTTTAAGAGATCTTGGGGAAAGATCTGGAGCAGAGATAAGAAAGCGCTATAAAAGGGAAGTGAATCCAGTAGAATCTTCATCGAGTACTACACACTCCATCAAATCATCGCCATGGCTCAATCCGTCCCACCAGGAGACATCCAAACCCAACCAAACGCCAAGATCGTCTTCAATGCTCCATTCGACGACAAGCACACCTACCACATCAAGGTGATCAACTCGTCTGCCCGTCGTATCGGATACGGTATCAAGACCACCAACATGAAGCGTCTTGGCGTCGACCCACCATGTGGAGTTCTTGACCCAAAGGAGGCTGTCCTTCTCGCCGTCTCTTGCGATGCTTTCGCTTACGGACAAGAGGTAAGGATTCGGAATTCAAAAGGAATTCTTCTGAATATTTTCTATTTTTCAGGACACCAACAACGACCGTATCACCGTCGAGTGGACCAACACCCCAGACGGAGCTGCCAAGCAATTCCGCCGCGAGTGGTTCCAGGGAGACGGTATGGTTCGTCGCAAGAACCTCCCAATCGAGTACAACCCATAAGGAAAACTTATTGAACTCGGAAAGCAATTTTCAAAGTAAACGGTTTTCTTTATTATTGTTGTTTTTTGTTTGCTCTATAGTTTGCTCGCTTTGTTCACAATTCCGAAATTACAACAGACGATTTTATGACTTGAAAGTTGGAATTCTCTTTGAAATTTGGGGCACAATTTTGGGGGCACAAGGGGACACAACTAATTTATGGTACAAAAAGGGATTTTGGGTACAACGTCAGAGGTTCAATGATTTACGGGCACGAATTCTTATAGAACACCTGTCGCGCCCTCTCCCGAGGGCACGACCTTATGTAATAGCCTAGCGGGTCACATGGAGCTACGTCTGCACCATCGGAAGTCTACAGTCTATTATTTCTGATCCTTTTGAAAGGACCCAATTTGAGATCTGGAAATAGTTAGAGGACCCGT</canonical>
            <polymorphic>TACGTGAACTTCCAGCTCTTTTTCTCATCAGTTTAAGAGATCTTGGGGAAAGATCTGGAGCAGAGATAAGAAAGCGCTATAAAAGGGAAGTGAATCCAGTAGAATCTTCATCGAGTACTACACACTCCATCAAATCATCGCCATGGCTCAATCCGTCCCACCAGGAGACATCCAAACCCAACCAAACGCCAAGATCGTCTTCAATGCTCCATTCGACGACAAGCACACCTACCACATCAAGGTGATCAACTCGTCTGCCCGTCGTATCGGATACGGTATCAAGACCACCAACATGAAGCGTCTTGGCGTCGACCCACCATGTGGAGTTCTTGACCCAAAGGAGGCTGTCCTTCTCGCCGTCTCTTGCGATGCTTTCGCTTACGGACAAGAGGTAAGGATTCGGAATTCAAAAGGAATTCTTCTGAATATTTTCTATTTTTCAGGACACCAACAACGACCGTATCACCGTCGAGTGGACCAACACCCCAGACGGAGCTGCSAAGCAATTCCGCCGCGAGTGGTTCCAGGGAGACGGTATGGTTCGTCGCAAGAACCTCCCAATCGAGTACAACCCATAAGGAAAACTTATTGAACTCGGAAAGCAATTTTCAAAGTAAACGGTTTTCTTTATTATTGTTGTTTTTTGTTTGCTCTATAGTTTGCTCGCTTTGTTCACAATTCCGAAATTACAACAGACGATTTTATGACTTGAAAGTTGGAATTCTCTTTGAAATTTGGGGCACAATTTTGGGGGCACAAGGGGACACAACTAATTTATGGTACAAAAAGGGATTTTGGGTACAACGTCAGAGGTTCAATGATTTACGGGCACGAATTCTTATAGAACACCTGTCGCGCCCTCTCCCGAGGGCACGACCTTATGTAATAGCCTAGCGGGTCACATGGAGCTACGTCTGCACCATCGGAAGTCTACAGTCTATTATTTCTGATCCTTTTGAAAGGACCCAATTTGAGATCTGGAAATAGTTAGAGGACCCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTCTATTTTTCAGGACACC</pcr_primer_p1>
		<pcr_primer_p2>AGCAAACTATAGAGCAAACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TATTTTCTATTTTTCAGGACACCAACAACGACCGTATCACCGTCGAGTGGACCAACACCCCAGACGGAGCTGCCAAGCAATTCCGCCGCGAGTGGTTCCAGGGAGACGGTATGGTTCGTCGCAAGAACCTCCCAATCGAGTACAACCCATAAGGAAAACTTATTGAACTCGGAAAGCAATTTTCAAAGTAAACGGTTTTCTTTATTATTGTTGTTTTTTGTTTGCTCTATAGTTTGCT</canonical_amplicon>
		<polymorphic_amplicon>TATTTTCTATTTTTCAGGACACCAACAACGACCGTATCACCGTCGAGTGGACCAACACCCCAGACGGAGCTGCSAAGCAATTCCGCCGCGAGTGGTTCCAGGGAGACGGTATGGTTCGTCGCAAGAACCTCCCAATCGAGTACAACCCATAAGGAAAACTTATTGAACTCGGAAAGCAATTTTCAAAGTAAACGGTTTTCTTTATTATTGTTGTTTTTTGTTTGCTCTATAGTTTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30662</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>256028</contig_pos>
        <strand>+</strand>
        <context>AACACTAAAA[C/T]GTCACCAGGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACTTCACAGGAAGTATCGATTTCTTCTTGACCAGTCAAAAACACTAAAA</left_flank>
        <right_flank>GTCACCAGGCGGTTCGGTGAGATGAATCTGCATCACAGTGATATGGGCGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCAAGATTTGTTCGCTGAATTTCAGGAACTGGAGTCGGCAGCATTTCATCACGGAACGCTCTCTCGGTATAAAGACGGTAGCATTTTCCTGGTCCGGTACGTCCGGCACGACCTGATCGTTGTTTGGCAGCAGCTTGAGAAATCGGTGTTACAACCTGAAAACGAATAGTTTGAATAAAGCCTTTATTATAAAAAATTTTACCAGTGAATCCATACCACTCTTTGGATTATAAATCTTCTGTTTCACAAATCCAGGATCAACGACGTAAAAGATACCGTCGATGGTAAGTGATGTTTCGGCGATGTTGGTTGCAATGACCACTTTACGTTTTCCTGCTGGAGCCGGTTCAAAGATTCGTGTTTGCATTTCACTAGGAAGAGCTCCGTAAACTGGAAGAATAATCAGTTCAGGAACATCCGGTCCCATTGACTTCATCCGTTCGTACAACACTTCACAGGAAGTATCGATTTCTTCTTGACCAGTCAAAAACACTAAAATGTCACCAGGCGGTTCGGTGAGATGAATCTGCATCACAGTGATATGGGCGGCTTCGAGATAGTCTGACTCTGGTTCTCTTGTATACAAGATTTCAACAGGGAAAGTTCTTCCAGGAATAGTGAAAATGGGTGCTTCCAAGAAGTACTCGGAGAATTTCACAGAATCTAGAGTAGCACTAGTGATAATCAGTTTTAGCTCCGGACGTTTTCTAGCAGCAGCTTTCAGCAGACCAAACAGAACATCAGTGTGAATTGTACGTTCGTGAGCTTCGTCAAGCATAATCAATGAATATCCTGATAGATCTGGATCGATAAGACATTCTCTGAGCAACATTCCGTCCGTCATGTATTTGATAACTGTGTCTTGACTGGTGCAATCTTCGAAACGAATAGTGTAACCCACATCTGATCCAAGTTTGCATCCGTACTCTTCTGCCACACGCTTTGCCACAGACATTGCAGCTACACGACGTGGTTGTGTGCATCCGATTTTCCCACGTC</canonical>
            <polymorphic>AGCAAGATTTGTTCGCTGAATTTCAGGAACTGGAGTCGGCAGCATTTCATCACGGAACGCTCTCTCGGTATAAAGACGGTAGCATTTTCCTGGTCCGGTACGTCCGGCACGACCTGATCGTTGTTTGGCAGCAGCTTGAGAAATCGGTGTTACAACCTGAAAACGAATAGTTTGAATAAAGCCTTTATTATAAAAAATTTTACCAGTGAATCCATACCACTCTTTGGATTATAAATCTTCTGTTTCACAAATCCAGGATCAACGACGTAAAAGATACCGTCGATGGTAAGTGATGTTTCGGCGATGTTGGTTGCAATGACCACTTTACGTTTTCCTGCTGGAGCCGGTTCAAAGATTCGTGTTTGCATTTCACTAGGAAGAGCTCCGTAAACTGGAAGAATAATCAGTTCAGGAACATCCGGTCCCATTGACTTCATCCGTTCGTACAACACTTCACAGGAAGTATCGATTTCTTCTTGACCAGTCAAAAACACTAAAAYGTCACCAGGCGGTTCGGTGAGATGAATCTGCATCACAGTGATATGGGCGGCTTCGAGATAGTCTGACTCTGGTTCTCTTGTATACAAGATTTCAACAGGGAAAGTTCTTCCAGGAATAGTGAAAATGGGTGCTTCCAAGAAGTACTCGGAGAATTTCACAGAATCTAGAGTAGCACTAGTGATAATCAGTTTTAGCTCCGGACGTTTTCTAGCAGCAGCTTTCAGCAGACCAAACAGAACATCAGTGTGAATTGTACGTTCGTGAGCTTCGTCAAGCATAATCAATGAATATCCTGATAGATCTGGATCGATAAGACATTCTCTGAGCAACATTCCGTCCGTCATGTATTTGATAACTGTGTCTTGACTGGTGCAATCTTCGAAACGAATAGTGTAACCCACATCTGATCCAAGTTTGCATCCGTACTCTTCTGCCACACGCTTTGCCACAGACATTGCAGCTACACGACGTGGTTGTGTGCATCCGATTTTCCCACGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>496 256 209 39</canonical_bands>
                <polymorphic_bands>535 256 209</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTAAACTGGAAGAATAATCAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCACTATTCCTGGAAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CGTAAACTGGAAGAATAATCAGTTCAGGAACATCCGGTCCCATTGACTTCATCCGTTCGTACAACACTTCACAGGAAGTATCGATTTCTTCTTGACCAGTCAAAAACACTAAAATGTCACCAGGCGGTTCGGTGAGATGAATCTGCATCACAGTGATATGGGCGGCTTCGAGATAGTCTGACTCTGGTTCTCTTGTATACAAGATTTCAACAGGGAAAGTTCTTCCAGGAATAGTGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CGTAAACTGGAAGAATAATCAGTTCAGGAACATCCGGTCCCATTGACTTCATCCGTTCGTACAACACTTCACAGGAAGTATCGATTTCTTCTTGACCAGTCAAAAACACTAAAAYGTCACCAGGCGGTTCGGTGAGATGAATCTGCATCACAGTGATATGGGCGGCTTCGAGATAGTCTGACTCTGGTTCTCTTGTATACAAGATTTCAACAGGGAAAGTTCTTCCAGGAATAGTGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30663</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>274385</contig_pos>
        <strand></strand>
        <context>aaaataatta[T/C]tgtarggaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGACAAAGGAATATTGTAGGAAAAAGATATTCGGAATTGAAAAATAATTA</left_flank>
        <right_flank>TGTAGGGAAAAAAGTTCGAAGTTGAAAAGGATGGCTGTAGGAGAAAGATT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGAACGTCCATTCAAAACTTTTCTACCAGCTCGAGCACAAAAAAGCTTGAAAAAACAAGCGAGGAAAATGATACAAACTGTTATGATAAAATGAATTAATTAAAAATAAAGAATATATATTAGTCTGGAAATCAAGCCTCTTGGATGTACCTACACATAACATTTTGAGAACTGTGCGGTCATGAATCAGACCAAGAGTTCCAGATTCGTTATTGTTGATTCTCTATGCTTCTCGGCAAAAATGATTCTGAGGTACTGAGGTATAGGGATACAGAGTTGCAACAATTTTTAGGTGTAAAAATAAAATAAAGGAGTGCAAGTTTTCGAGTTTAGTATAACCAGAAAGTAAACGTTTCGGGTAACCCATACCATACGAAGATAACATGGATTATCATAGGGAAAATATTAGAAATTGAAAAAAATTACTATAGGGAAAATATTTCAAAATGACAAAGGAATATTGTAGGAAAAAGATATTCGGAATTGAAAAATAATTATTGTAGGGAAAAAAGTTCGAAGTTGAAAAGGATGGCTGTAGGAGAAAGATTTTCGAAAATTTAAAAGGATTACTATAGGGAAAAATATTTCAAATTGAAAAAGGATTACTGTGGGGAAAAGTAAATAACTCATAAACAACCGAGTTTATTTCAAAAAATTAAGCATCGCTCCTCTACAAAAGCGCCGCGCTGTGTTTTTCTTGACGTCATTTTTTGAGGTGTTTATTATTTTGAGTCAACTGGGCTGTTTACCTATTCAAATAATAGGTTTTTAAAAATTAACATAAACTTACTTTCATTAAAAAATCTATTTCGTTTTGAAGAAAAAAATCATTTTAAAAAATGAATTATACAACATTTCCGCGTGTATTTTCATGAACTCTTTTACTATCTTATCTTCAGATCTGATCTACGGGGGCTATATAAGCTGAAGAAACCAACGAAAAGTCAGAACGAGAAGAGAAAGGAAGAGAAGAGTTCTAACGAGGTTCCAGGGCAGCT</canonical>
            <polymorphic>CTGGAACGTCCATTCAAAACTTTTCTACCAGCTCGAGCACAAAAAAGCTTGAAAAAACAAGCGAGGAAAATGATACAAACTGTTATGATAAAATGAATTAATTAAAAATAAAGAATATATATTAGTCTGGAAATCAAGCCTCTTGGATGTACCTACACATAACATTTTGAGAACTGTGCGGTCATGAATCAGACCAAGAGTTCCAGATTCGTTATTGTTGATTCTCTATGCTTCTCGGCAAAAATGATTCTGAGGTACTGAGGTATAGGGATACAGAGTTGCAACAATTTTTAGGTGTAAAAATAAAATAAAGGAGTGCAAGTTTTCGAGTTTAGTATAACCAGAAAGTAAACGTTTCGGGTAACCCATACCATACGAAGATAACATGGATTATCATAGGGAAAATATTAGAAATTGAAAAAAATTACTATAGGGAAAATATTTCAAAATGACAAAGGAATATTGTAGGAAAAAGATATTCGGAATTGAAAAATAATTAYTGTAGGGAAAAAAGTTCGAAGTTGAAAAGGATGGCTGTAGGAGAAAGATTTTCGAAAATTTAAAAGGATTACTATAGGGAAAAATATTTCAAATTGAAAAAGGATTACTGTGGGGAAAAGTAAATAACTCATAAACAACCGAGTTTATTTCAAAAAATTAAGCATCGCTCCTCTACAAAAGCGCCGCGCTGTGTTTTTCTTGACGTCATTTTTTGAGGTGTTTATTATTTTGAGTCAACTGGGCTGTTTACCTATTCAAATAATAGGTTTTTAAAAATTAACATAAACTTACTTTCATTAAAAAATCTATTTCGTTTTGAAGAAAAAAATCATTTTAAAAAATGAATTATACAACATTTCCGCGTGTATTTTCATGAACTCTTTTACTATCTTATCTTCAGATCTGATCTACGGGGGCTATATAAGCTGAAGAAACCAACGAAAAGTCAGAACGAGAAGAGAAAGGAAGAGAAGAGTTCTAACGAGGTTCCAGGGCAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGTAAACGTTTCGGGTAA</pcr_primer_p1>
		<pcr_primer_p2>AACTCGGTTGTTTATGAGTTATTT</pcr_primer_p2>
		<pcr_amplicon_size>302</pcr_amplicon_size>
		<canonical_amplicon>GAAAGTAAACGTTTCGGGTAACCCATACCATACGAAGATAACATGGATTATCATAGGGAAAATATTAGAAATTGAAAAAAATTACTATAGGGAAAATATTTCAAAATGACAAAGGAATATTGTAGGAAAAAGATATTCGGAATTGAAAAATAATTATTGTAGGGAAAAAAGTTCGAAGTTGAAAAGGATGGCTGTAGGAGAAAGATTTTCGAAAATTTAAAAGGATTACTATAGGGAAAAATATTTCAAATTGAAAAAGGATTACTGTGGGGAAAAGTAAATAACTCATAAACAACCGAGTT</canonical_amplicon>
		<polymorphic_amplicon>GAAAGTAAACGTTTCGGGTAACCCATACCATACGAAGATAACATGGATTATCATAGGGAAAATATTAGAAATTGAAAAAAATTACTATAGGGAAAATATTTCAAAATGACAAAGGAATATTGTAGGAAAAAGATATTCGGAATTGAAAAATAATTAYTGTAGGGAAAAAAGTTCGAAGTTGAAAAGGATGGCTGTAGGAGAAAGATTTTCGAAAATTTAAAAGGATTACTATAGGGAAAAATATTTCAAATTGAAAAAGGATTACTGTGGGGAAAAGTAAATAACTCATAAACAACCGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30664</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>274390</contig_pos>
        <strand></strand>
        <context>aattaytgta[G/A]ggaaaaaagt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAGGAATATTGTAGGAAAAAGATATTCGGAATTGAAAAATAATTATTGTA</left_flank>
        <right_flank>GGAAAAAAGTTCGAAGTTGAAAAGGATGGCTGTAGGAGAAAGATTTTCGA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGTCCATTCAAAACTTTTCTACCAGCTCGAGCACAAAAAAGCTTGAAAAAACAAGCGAGGAAAATGATACAAACTGTTATGATAAAATGAATTAATTAAAAATAAAGAATATATATTAGTCTGGAAATCAAGCCTCTTGGATGTACCTACACATAACATTTTGAGAACTGTGCGGTCATGAATCAGACCAAGAGTTCCAGATTCGTTATTGTTGATTCTCTATGCTTCTCGGCAAAAATGATTCTGAGGTACTGAGGTATAGGGATACAGAGTTGCAACAATTTTTAGGTGTAAAAATAAAATAAAGGAGTGCAAGTTTTCGAGTTTAGTATAACCAGAAAGTAAACGTTTCGGGTAACCCATACCATACGAAGATAACATGGATTATCATAGGGAAAATATTAGAAATTGAAAAAAATTACTATAGGGAAAATATTTCAAAATGACAAAGGAATATTGTAGGAAAAAGATATTCGGAATTGAAAAATAATTATTGTAGGGAAAAAAGTTCGAAGTTGAAAAGGATGGCTGTAGGAGAAAGATTTTCGAAAATTTAAAAGGATTACTATAGGGAAAAATATTTCAAATTGAAAAAGGATTACTGTGGGGAAAAGTAAATAACTCATAAACAACCGAGTTTATTTCAAAAAATTAAGCATCGCTCCTCTACAAAAGCGCCGCGCTGTGTTTTTCTTGACGTCATTTTTTGAGGTGTTTATTATTTTGAGTCAACTGGGCTGTTTACCTATTCAAATAATAGGTTTTTAAAAATTAACATAAACTTACTTTCATTAAAAAATCTATTTCGTTTTGAAGAAAAAAATCATTTTAAAAAATGAATTATACAACATTTCCGCGTGTATTTTCATGAACTCTTTTACTATCTTATCTTCAGATCTGATCTACGGGGGCTATATAAGCTGAAGAAACCAACGAAAAGTCAGAACGAGAAGAGAAAGGAAGAGAAGAGTTCTAACGAGGTTCCAGGGCAGCTGGGAT</canonical>
            <polymorphic>ACGTCCATTCAAAACTTTTCTACCAGCTCGAGCACAAAAAAGCTTGAAAAAACAAGCGAGGAAAATGATACAAACTGTTATGATAAAATGAATTAATTAAAAATAAAGAATATATATTAGTCTGGAAATCAAGCCTCTTGGATGTACCTACACATAACATTTTGAGAACTGTGCGGTCATGAATCAGACCAAGAGTTCCAGATTCGTTATTGTTGATTCTCTATGCTTCTCGGCAAAAATGATTCTGAGGTACTGAGGTATAGGGATACAGAGTTGCAACAATTTTTAGGTGTAAAAATAAAATAAAGGAGTGCAAGTTTTCGAGTTTAGTATAACCAGAAAGTAAACGTTTCGGGTAACCCATACCATACGAAGATAACATGGATTATCATAGGGAAAATATTAGAAATTGAAAAAAATTACTATAGGGAAAATATTTCAAAATGACAAAGGAATATTGTAGGAAAAAGATATTCGGAATTGAAAAATAATTATTGTARGGAAAAAAGTTCGAAGTTGAAAAGGATGGCTGTAGGAGAAAGATTTTCGAAAATTTAAAAGGATTACTATAGGGAAAAATATTTCAAATTGAAAAAGGATTACTGTGGGGAAAAGTAAATAACTCATAAACAACCGAGTTTATTTCAAAAAATTAAGCATCGCTCCTCTACAAAAGCGCCGCGCTGTGTTTTTCTTGACGTCATTTTTTGAGGTGTTTATTATTTTGAGTCAACTGGGCTGTTTACCTATTCAAATAATAGGTTTTTAAAAATTAACATAAACTTACTTTCATTAAAAAATCTATTTCGTTTTGAAGAAAAAAATCATTTTAAAAAATGAATTATACAACATTTCCGCGTGTATTTTCATGAACTCTTTTACTATCTTATCTTCAGATCTGATCTACGGGGGCTATATAAGCTGAAGAAACCAACGAAAAGTCAGAACGAGAAGAGAAAGGAAGAGAAGAGTTCTAACGAGGTTCCAGGGCAGCTGGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGTAAACGTTTCGGGTAA</pcr_primer_p1>
		<pcr_primer_p2>AACTCGGTTGTTTATGAGTTATTT</pcr_primer_p2>
		<pcr_amplicon_size>302</pcr_amplicon_size>
		<canonical_amplicon>GAAAGTAAACGTTTCGGGTAACCCATACCATACGAAGATAACATGGATTATCATAGGGAAAATATTAGAAATTGAAAAAAATTACTATAGGGAAAATATTTCAAAATGACAAAGGAATATTGTAGGAAAAAGATATTCGGAATTGAAAAATAATTATTGTAGGGAAAAAAGTTCGAAGTTGAAAAGGATGGCTGTAGGAGAAAGATTTTCGAAAATTTAAAAGGATTACTATAGGGAAAAATATTTCAAATTGAAAAAGGATTACTGTGGGGAAAAGTAAATAACTCATAAACAACCGAGTT</canonical_amplicon>
		<polymorphic_amplicon>GAAAGTAAACGTTTCGGGTAACCCATACCATACGAAGATAACATGGATTATCATAGGGAAAATATTAGAAATTGAAAAAAATTACTATAGGGAAAATATTTCAAAATGACAAAGGAATATTGTAGGAAAAAGATATTCGGAATTGAAAAATAATTATTGTARGGAAAAAAGTTCGAAGTTGAAAAGGATGGCTGTAGGAGAAAGATTTTCGAAAATTTAAAAGGATTACTATAGGGAAAAATATTTCAAATTGAAAAAGGATTACTGTGGGGAAAAGTAAATAACTCATAAACAACCGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30665</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>275837</contig_pos>
        <strand></strand>
        <context>tttaaatgtt[T/C]gtcgcttcgt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAGCAAGCTGGTGCGCCTTCGGCGCGATTCAATCTATTTTTTTAAATGTT</left_flank>
        <right_flank>GTCGCTTCGTTTCTCACTTTTTCTAAATAAAAGGGTCACGTAAATATATG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCTTATCATTTTCGAATATTTTTACCTACATTAAATCTTACCATTTTTGATTTTTTTTCCTTACTGTAATCCTTTTCCTTTTGAATACTTTTCTCCTACAGTAATCCTTTTTCAATTTCGAAAACTTTTCCCTACGTAATCCGTTTCATTTTCGAAGTTTAGTACTGCTTGATTTTAACTTCCGCACCCCAAATTTCTGTGTCTCTAAACCGTAGTTATTGTGTACAAGAATTATATCCTCCGATGTTTGGGGTTCATGCCTAGGTGAATATTGTATTGTATTGTATTGTATTTATTACGTAACAATACAATACAATATCATTTCCACTGAATGTTTCCCCTTTCACAATTGAAAAAAATGAAACAACAATAAATAGCGTACGCATAGCATTGTAGCAGTGAAAAAGATTTGATAGCACTTAATCAAAGATAGATGTTTTCGAATACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCAATCTATTTTTTTAAATGTTTGTCGCTTCGTTTCTCACTTTTTCTAAATAAAAGGGTCACGTAAATATATGTATTTTTCTATTTTTCAAAAGTCCACAGACGGACACGAGGACGGACAGACGCCTCTAGCGTTTTATTAATAAGGAAGATTTTCCCTACAGTAATCCTTTTTAATTTCGAATATTTTTCCTACAGTAAGATTTTATTTTTTGCACCTGGATTTCTGGTTTCCCAATTGAATTCTGGATTATGTACTGTATTTCAGAAGATGTCCTCCAGATTCCGGGGGTGGAAAATCTTCTTGTGGAGCACTGTATATATTTTTGCGTTTGTTTAATGAAAAGAGTTTAGTCTGAAGTTTGGTGACTATTCACAAATCAATCCGCAATTTTACAATCAAAAAAAGTGAGCTGACAAGAAAGTTAACAAGAAAAGCAAAGCAAGCTTAATACAATTGGAGGGGACGTAAAATAATCTTCTTTAGCTTGCATATGATGTATTGCTTCTGGGGATGAATGGAT</canonical>
            <polymorphic>ATCCTTATCATTTTCGAATATTTTTACCTACATTAAATCTTACCATTTTTGATTTTTTTTCCTTACTGTAATCCTTTTCCTTTTGAATACTTTTCTCCTACAGTAATCCTTTTTCAATTTCGAAAACTTTTCCCTACGTAATCCGTTTCATTTTCGAAGTTTAGTACTGCTTGATTTTAACTTCCGCACCCCAAATTTCTGTGTCTCTAAACCGTAGTTATTGTGTACAAGAATTATATCCTCCGATGTTTGGGGTTCATGCCTAGGTGAATATTGTATTGTATTGTATTGTATTTATTACGTAACAATACAATACAATATCATTTCCACTGAATGTTTCCCCTTTCACAATTGAAAAAAATGAAACAACAATAAATAGCGTACGCATAGCATTGTAGCAGTGAAAAAGATTTGATAGCACTTAATCAAAGATAGATGTTTTCGAATACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCAATCTATTTTTTTAAATGTTYGTCGCTTCGTTTCTCACTTTTTCTAAATAAAAGGGTCACGTAAATATATGTATTTTTCTATTTTTCAAAAGTCCACAGACGGACACGAGGACGGACAGACGCCTCTAGCGTTTTATTAATAAGGAAGATTTTCCCTACAGTAATCCTTTTTAATTTCGAATATTTTTCCTACAGTAAGATTTTATTTTTTGCACCTGGATTTCTGGTTTCCCAATTGAATTCTGGATTATGTACTGTATTTCAGAAGATGTCCTCCAGATTCCGGGGGTGGAAAATCTTCTTGTGGAGCACTGTATATATTTTTGCGTTTGTTTAATGAAAAGAGTTTAGTCTGAAGTTTGGTGACTATTCACAAATCAATCCGCAATTTTACAATCAAAAAAAGTGAGCTGACAAGAAAGTTAACAAGAAAAGCAAAGCAAGCTTAATACAATTGGAGGGGACGTAAAATAATCTTCTTTAGCTTGCATATGATGTATTGCTTCTGGGGATGAATGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGATAGCACTTAATCAAAGATAGA</pcr_primer_p1>
		<pcr_primer_p2>AATACAGTACATAATCCAGAATTCAA</pcr_primer_p2>
		<pcr_amplicon_size>329</pcr_amplicon_size>
		<canonical_amplicon>TTGATAGCACTTAATCAAAGATAGATGTTTTCGAATACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCAATCTATTTTTTTAAATGTTTGTCGCTTCGTTTCTCACTTTTTCTAAATAAAAGGGTCACGTAAATATATGTATTTTTCTATTTTTCAAAAGTCCACAGACGGACACGAGGACGGACAGACGCCTCTAGCGTTTTATTAATAAGGAAGATTTTCCCTACAGTAATCCTTTTTAATTTCGAATATTTTTCCTACAGTAAGATTTTATTTTTTGCACCTGGATTTCTGGTTTCCCAATTGAATTCTGGATTATGTACTGTATT</canonical_amplicon>
		<polymorphic_amplicon>TTGATAGCACTTAATCAAAGATAGATGTTTTCGAATACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCAATCTATTTTTTTAAATGTTYGTCGCTTCGTTTCTCACTTTTTCTAAATAAAAGGGTCACGTAAATATATGTATTTTTCTATTTTTCAAAAGTCCACAGACGGACACGAGGACGGACAGACGCCTCTAGCGTTTTATTAATAAGGAAGATTTTCCCTACAGTAATCCTTTTTAATTTCGAATATTTTTCCTACAGTAAGATTTTATTTTTTGCACCTGGATTTCTGGTTTCCCAATTGAATTCTGGATTATGTACTGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30666</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>275964</contig_pos>
        <strand></strand>
        <context>taataaggaa[G/A]attttcccta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGACGGACACGAGGACGGACAGACGCCTCTAGCGTTTTATTAATAAGGAA</left_flank>
        <right_flank>ATTTTCCCTACAGTAATCCTTTTTAATTTCGAATATTTTTCCTACAGTAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCCCTACGTAATCCGTTTCATTTTCGAAGTTTAGTACTGCTTGATTTTAACTTCCGCACCCCAAATTTCTGTGTCTCTAAACCGTAGTTATTGTGTACAAGAATTATATCCTCCGATGTTTGGGGTTCATGCCTAGGTGAATATTGTATTGTATTGTATTGTATTTATTACGTAACAATACAATACAATATCATTTCCACTGAATGTTTCCCCTTTCACAATTGAAAAAAATGAAACAACAATAAATAGCGTACGCATAGCATTGTAGCAGTGAAAAAGATTTGATAGCACTTAATCAAAGATAGATGTTTTCGAATACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCAATCTATTTTTTTAAATGTTTGTCGCTTCGTTTCTCACTTTTTCTAAATAAAAGGGTCACGTAAATATATGTATTTTTCTATTTTTCAAAAGTCCACAGACGGACACGAGGACGGACAGACGCCTCTAGCGTTTTATTAATAAGGAAGATTTTCCCTACAGTAATCCTTTTTAATTTCGAATATTTTTCCTACAGTAAGATTTTATTTTTTGCACCTGGATTTCTGGTTTCCCAATTGAATTCTGGATTATGTACTGTATTTCAGAAGATGTCCTCCAGATTCCGGGGGTGGAAAATCTTCTTGTGGAGCACTGTATATATTTTTGCGTTTGTTTAATGAAAAGAGTTTAGTCTGAAGTTTGGTGACTATTCACAAATCAATCCGCAATTTTACAATCAAAAAAAGTGAGCTGACAAGAAAGTTAACAAGAAAAGCAAAGCAAGCTTAATACAATTGGAGGGGACGTAAAATAATCTTCTTTAGCTTGCATATGATGTATTGCTTCTGGGGATGAATGGATTCAGAAATCACAACCTTGCCATAAAATAATACCACATGAAACAAATCGGGGGTAGGGGGAAAGAATGCAAAGAAGGATAACAGAGTTTGGAGAGAAATAGGTTAGGAACTGACGAGATTATGCCACA</canonical>
            <polymorphic>TTTTCCCTACGTAATCCGTTTCATTTTCGAAGTTTAGTACTGCTTGATTTTAACTTCCGCACCCCAAATTTCTGTGTCTCTAAACCGTAGTTATTGTGTACAAGAATTATATCCTCCGATGTTTGGGGTTCATGCCTAGGTGAATATTGTATTGTATTGTATTGTATTTATTACGTAACAATACAATACAATATCATTTCCACTGAATGTTTCCCCTTTCACAATTGAAAAAAATGAAACAACAATAAATAGCGTACGCATAGCATTGTAGCAGTGAAAAAGATTTGATAGCACTTAATCAAAGATAGATGTTTTCGAATACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCAATCTATTTTTTTAAATGTTTGTCGCTTCGTTTCTCACTTTTTCTAAATAAAAGGGTCACGTAAATATATGTATTTTTCTATTTTTCAAAAGTCCACAGACGGACACGAGGACGGACAGACGCCTCTAGCGTTTTATTAATAAGGAARATTTTCCCTACAGTAATCCTTTTTAATTTCGAATATTTTTCCTACAGTAAGATTTTATTTTTTGCACCTGGATTTCTGGTTTCCCAATTGAATTCTGGATTATGTACTGTATTTCAGAAGATGTCCTCCAGATTCCGGGGGTGGAAAATCTTCTTGTGGAGCACTGTATATATTTTTGCGTTTGTTTAATGAAAAGAGTTTAGTCTGAAGTTTGGTGACTATTCACAAATCAATCCGCAATTTTACAATCAAAAAAAGTGAGCTGACAAGAAAGTTAACAAGAAAAGCAAAGCAAGCTTAATACAATTGGAGGGGACGTAAAATAATCTTCTTTAGCTTGCATATGATGTATTGCTTCTGGGGATGAATGGATTCAGAAATCACAACCTTGCCATAAAATAATACCACATGAAACAAATCGGGGGTAGGGGGAAAGAATGCAAAGAAGGATAACAGAGTTTGGAGAGAAATAGGTTAGGAACTGACGAGATTATGCCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGATAGCACTTAATCAAAGATAGA</pcr_primer_p1>
		<pcr_primer_p2>AATACAGTACATAATCCAGAATTCAA</pcr_primer_p2>
		<pcr_amplicon_size>329</pcr_amplicon_size>
		<canonical_amplicon>TTGATAGCACTTAATCAAAGATAGATGTTTTCGAATACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCAATCTATTTTTTTAAATGTTTGTCGCTTCGTTTCTCACTTTTTCTAAATAAAAGGGTCACGTAAATATATGTATTTTTCTATTTTTCAAAAGTCCACAGACGGACACGAGGACGGACAGACGCCTCTAGCGTTTTATTAATAAGGAAGATTTTCCCTACAGTAATCCTTTTTAATTTCGAATATTTTTCCTACAGTAAGATTTTATTTTTTGCACCTGGATTTCTGGTTTCCCAATTGAATTCTGGATTATGTACTGTATT</canonical_amplicon>
		<polymorphic_amplicon>TTGATAGCACTTAATCAAAGATAGATGTTTTCGAATACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCAATCTATTTTTTTAAATGTTTGTCGCTTCGTTTCTCACTTTTTCTAAATAAAAGGGTCACGTAAATATATGTATTTTTCTATTTTTCAAAAGTCCACAGACGGACACGAGGACGGACAGACGCCTCTAGCGTTTTATTAATAAGGAARATTTTCCCTACAGTAATCCTTTTTAATTTCGAATATTTTTCCTACAGTAAGATTTTATTTTTTGCACCTGGATTTCTGGTTTCCCAATTGAATTCTGGATTATGTACTGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30667</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>325953</contig_pos>
        <strand>+</strand>
        <context>CATTTTAACT[A/G]GGACCGTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGAGCGATGAGGTGTTCCGTTATCAGCCTGTGGAAATGACATTTTAACT</left_flank>
        <right_flank>GGACCGTTTCGAGGAAAGAATCTATTCTAGTGGTGGAGGGGCATACTGTA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTATCTAAATTTTTCTTTTCCCCCAAATTCCAATGATTACATGCCTTCGATTCTTTACATGACATTAAAATGATTCTGAAGTTGATGTGTATTGCACCGGTCAGCACAACTTCTTATAATTTTCTGAAATTTTTTCGAGAGGTAAAAAAAATCGAGACAGCTGATAAGATGCTCAGTTTCTCCGAATTGCGTTACTGATGACGATTATGCCTGATTCTAATCAGCAACTGCACCGTAAATACAGTGTTTCAATGAAATCAGTCGGCTCTAAAAACTAGAAAATCTCATTTAGGCCGTTTCGTTTGTTTTAAAATGATTCATTTAGGCTACTCAATGGTGCAAAACTACTGAATGATAACAGGTGATGGAAGAGAATTGAGTAAACACCCATTGTGTTTTTTTCGTGTCATGAACTCAATCGTTTTCAGCACGTCATTATTCAGTTTTACGAGCGATGAGGTGTTCCGTTATCAGCCTGTGGAAATGACATTTTAACTGGGACCGTTTCGAGGAAAGAATCTATTCTAGTGGTGGAGGGGCATACTGTAGTTTCAGGAAACCGTAAGACTAGAAGTAAAGGTCTTGATGGGTAAACCTTAAGGAAAAACTTGCTTTGGAGAAGCCTGTAAAATGAGATCGAAGTTGAATGAAATTTGAAAACCAGCCTAGATATAGAATGAAAACCACATTTAAATATGATAATCTGTAAATCGAGTACAAAACTGTTTGGAAAAAATACATGATCTATCAAAATTACGGGGAAAAACAACCTTGAAACCTGTAATAGGAGGGAGGGCCCACTAATATTGAGCTAATTTATCTCGATTACTGTTAATGATATAAAATAGTTGTGAACTAATAAATTGTTTATCATAACTTCCAAAATATTTTATCAGTTAACACAATTTTGATATCTTTCTTATAGTTAGGAACCGAGATAATCGAACTATAACTTGACAGGGTGTGGGGCATTTCTATTACAGGTTTTAGGTATTTAT</canonical>
            <polymorphic>GTTTATCTAAATTTTTCTTTTCCCCCAAATTCCAATGATTACATGCCTTCGATTCTTTACATGACATTAAAATGATTCTGAAGTTGATGTGTATTGCACCGGTCAGCACAACTTCTTATAATTTTCTGAAATTTTTTCGAGAGGTAAAAAAAATCGAGACAGCTGATAAGATGCTCAGTTTCTCCGAATTGCGTTACTGATGACGATTATGCCTGATTCTAATCAGCAACTGCACCGTAAATACAGTGTTTCAATGAAATCAGTCGGCTCTAAAAACTAGAAAATCTCATTTAGGCCGTTTCGTTTGTTTTAAAATGATTCATTTAGGCTACTCAATGGTGCAAAACTACTGAATGATAACAGGTGATGGAAGAGAATTGAGTAAACACCCATTGTGTTTTTTTCGTGTCATGAACTCAATCGTTTTCAGCACGTCATTATTCAGTTTTACGAGCGATGAGGTGTTCCGTTATCAGCCTGTGGAAATGACATTTTAACTRGGACCGTTTCGAGGAAAGAATCTATTCTAGTGGTGGAGGGGCATACTGTAGTTTCAGGAAACCGTAAGACTAGAAGTAAAGGTCTTGATGGGTAAACCTTAAGGAAAAACTTGCTTTGGAGAAGCCTGTAAAATGAGATCGAAGTTGAATGAAATTTGAAAACCAGCCTAGATATAGAATGAAAACCACATTTAAATATGATAATCTGTAAATCGAGTACAAAACTGTTTGGAAAAAATACATGATCTATCAAAATTACGGGGAAAAACAACCTTGAAACCTGTAATAGGAGGGAGGGCCCACTAATATTGAGCTAATTTATCTCGATTACTGTTAATGATATAAAATAGTTGTGAACTAATAAATTGTTTATCATAACTTCCAAAATATTTTATCAGTTAACACAATTTTGATATCTTTCTTATAGTTAGGAACCGAGATAATCGAACTATAACTTGACAGGGTGTGGGGCATTTCTATTACAGGTTTTAGGTATTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 296 135 67</canonical_bands>
                <polymorphic_bands>798 135 67</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCACGTCATTATTCAGTTTTAC</pcr_primer_p1>
		<pcr_primer_p2>TCTATATCTAGGCTGGTTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCACGTCATTATTCAGTTTTACGAGCGATGAGGTGTTCCGTTATCAGCCTGTGGAAATGACATTTTAACTGGGACCGTTTCGAGGAAAGAATCTATTCTAGTGGTGGAGGGGCATACTGTAGTTTCAGGAAACCGTAAGACTAGAAGTAAAGGTCTTGATGGGTAAACCTTAAGGAAAAACTTGCTTTGGAGAAGCCTGTAAAATGAGATCGAAGTTGAATGAAATTTGAAAACCAGCCTAGATATAGA</canonical_amplicon>
		<polymorphic_amplicon>AGCACGTCATTATTCAGTTTTACGAGCGATGAGGTGTTCCGTTATCAGCCTGTGGAAATGACATTTTAACTRGGACCGTTTCGAGGAAAGAATCTATTCTAGTGGTGGAGGGGCATACTGTAGTTTCAGGAAACCGTAAGACTAGAAGTAAAGGTCTTGATGGGTAAACCTTAAGGAAAAACTTGCTTTGGAGAAGCCTGTAAAATGAGATCGAAGTTGAATGAAATTTGAAAACCAGCCTAGATATAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30668</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>401255</contig_pos>
        <strand></strand>
        <context>gtggtcaact[A/G]aaaaaatgtt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAGCTAATTCATCTCGGTTCTTGTTAAAGATACCAAAAAGTGGTCAACT</left_flank>
        <right_flank>AAAAAATGTTCATCATAATATCAGCAACATTTATCGATTGACAAACTTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTAAGTCCATTTTTTAAAACCATGCCCAAAATGGAATTCCAGTTATGGAGACACGGAGATCGGACACCAACTGAAACCTATCATAACGATCAGTTCAAAGAACAGGATTGGGTGTTTGGAGGAGGTGGATGGGGTCAATTGACACCGGTAAACTTTGATACATTGAGATATTTCCCAACTTCTTTTTTAGATTGGGATGAGACAGCACATGCAATTGGGTCAAAAACTAAGAGCTCGTTATGTTAACGGCCAACCTTATCAATTCCTTAACCGACGTTACGATCAACAAGAAATTTTTGTTAGATCTACTGATAAAAATAGAACTCTACTTTCGGCTTACTCGAATATGGTTGGGATGTACGGAAGTAATAACGAGAATGTCTCACTCCCAGGTACTGAAGAAATACCATAAAACCTGTAATAAAAGGGCCACTACATTGTCAAGTTTGAGCTAATTCATCTCGGTTCTTGTTAAAGATACCAAAAAGTGGTCAACTAAAAAAATGTTCATCATAATATCAGCAACATTTATCGATTGACAAACTTTTGATATTTTTCAAAGGAACCGAGATAATTGAGATTAAAATACAAGTAAAGGGTGAGCAGTTGAAGGCTACCCATTTTTAAAACCGACCTAAATTGTAAAACTGTTACAGGATATGACTATCCGGACGTTCCTGGGTGGCCAGTAGGCTTTGTCCCAATTCCAATTCACACTATTCCTGATGCCGAAGATCATGTGAGACTTTTTAAATTCATTTTTCGAACTCGTAGAATTTCAATTGCAGCTCCTCTCCGTTGACAACGCTTGTGCCTTACAAGATACAATTTGGGAGATGGCAAAAACCACAGACATCGTCTCCAGTTACTTCAATCGTTCAGATGTTAAAGCTTTGATGGGAAATCTGACGAATTACTGTGGAGAAGATATCAATCCAGAGAACCTGTGGATCCTTTTTAACGCTCTGAAAATTGAAAAGCAGTACTATCCATTGAAA</canonical>
            <polymorphic>CTGTAAGTCCATTTTTTAAAACCATGCCCAAAATGGAATTCCAGTTATGGAGACACGGAGATCGGACACCAACTGAAACCTATCATAACGATCAGTTCAAAGAACAGGATTGGGTGTTTGGAGGAGGTGGATGGGGTCAATTGACACCGGTAAACTTTGATACATTGAGATATTTCCCAACTTCTTTTTTAGATTGGGATGAGACAGCACATGCAATTGGGTCAAAAACTAAGAGCTCGTTATGTTAACGGCCAACCTTATCAATTCCTTAACCGACGTTACGATCAACAAGAAATTTTTGTTAGATCTACTGATAAAAATAGAACTCTACTTTCGGCTTACTCGAATATGGTTGGGATGTACGGAAGTAATAACGAGAATGTCTCACTCCCAGGTACTGAAGAAATACCATAAAACCTGTAATAAAAGGGCCACTACATTGTCAAGTTTGAGCTAATTCATCTCGGTTCTTGTTAAAGATACCAAAAAGTGGTCAACTRAAAAAATGTTCATCATAATATCAGCAACATTTATCGATTGACAAACTTTTGATATTTTTCAAAGGAACCGAGATAATTGAGATTAAAATACAAGTAAAGGGTGAGCAGTTGAAGGCTACCCATTTTTAAAACCGACCTAAATTGTAAAACTGTTACAGGATATGACTATCCGGACGTTCCTGGGTGGCCAGTAGGCTTTGTCCCAATTCCAATTCACACTATTCCTGATGCCGAAGATCATGTGAGACTTTTTAAATTCATTTTTCGAACTCGTAGAATTTCAATTGCAGCTCCTCTCCGTTGACAACGCTTGTGCCTTACAAGATACAATTTGGGAGATGGCAAAAACCACAGACATCGTCTCCAGTTACTTCAATCGTTCAGATGTTAAAGCTTTGATGGGAAATCTGACGAATTACTGTGGAGAAGATATCAATCCAGAGAACCTGTGGATCCTTTTTAACGCTCTGAAAATTGAAAAGCAGTACTATCCATTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTCTCACTCCCAGGTACT</pcr_primer_p1>
		<pcr_primer_p2>TAAAAATGGGTAGCCTTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATGTCTCACTCCCAGGTACTGAAGAAATACCATAAAACCTGTAATAAAAGGGCCACTACATTGTCAAGTTTGAGCTAATTCATCTCGGTTCTTGTTAAAGATACCAAAAAGTGGTCAACTAAAAAAATGTTCATCATAATATCAGCAACATTTATCGATTGACAAACTTTTGATATTTTTCAAAGGAACCGAGATAATTGAGATTAAAATACAAGTAAAGGGTGAGCAGTTGAAGGCTACCCATTTTTA</canonical_amplicon>
		<polymorphic_amplicon>AATGTCTCACTCCCAGGTACTGAAGAAATACCATAAAACCTGTAATAAAAGGGCCACTACATTGTCAAGTTTGAGCTAATTCATCTCGGTTCTTGTTAAAGATACCAAAAAGTGGTCAACTRAAAAAATGTTCATCATAATATCAGCAACATTTATCGATTGACAAACTTTTGATATTTTTCAAAGGAACCGAGATAATTGAGATTAAAATACAAGTAAAGGGTGAGCAGTTGAAGGCTACCCATTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30669</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>401320</contig_pos>
        <strand></strand>
        <context>tttttcaaag[G/A]aaccgagata</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATAATATCAGCAACATTTATCGATTGACAAACTTTTGATATTTTTCAAAG</left_flank>
        <right_flank>AACCGAGATAATTGAGATTAAAATACAAGTAAAGGGTGAGCAGTTGAAGG</right_flank>
        <qual_score>49</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACCAACTGAAACCTATCATAACGATCAGTTCAAAGAACAGGATTGGGTGTTTGGAGGAGGTGGATGGGGTCAATTGACACCGGTAAACTTTGATACATTGAGATATTTCCCAACTTCTTTTTTAGATTGGGATGAGACAGCACATGCAATTGGGTCAAAAACTAAGAGCTCGTTATGTTAACGGCCAACCTTATCAATTCCTTAACCGACGTTACGATCAACAAGAAATTTTTGTTAGATCTACTGATAAAAATAGAACTCTACTTTCGGCTTACTCGAATATGGTTGGGATGTACGGAAGTAATAACGAGAATGTCTCACTCCCAGGTACTGAAGAAATACCATAAAACCTGTAATAAAAGGGCCACTACATTGTCAAGTTTGAGCTAATTCATCTCGGTTCTTGTTAAAGATACCAAAAAGTGGTCAACTAAAAAAATGTTCATCATAATATCAGCAACATTTATCGATTGACAAACTTTTGATATTTTTCAAAGGAACCGAGATAATTGAGATTAAAATACAAGTAAAGGGTGAGCAGTTGAAGGCTACCCATTTTTAAAACCGACCTAAATTGTAAAACTGTTACAGGATATGACTATCCGGACGTTCCTGGGTGGCCAGTAGGCTTTGTCCCAATTCCAATTCACACTATTCCTGATGCCGAAGATCATGTGAGACTTTTTAAATTCATTTTTCGAACTCGTAGAATTTCAATTGCAGCTCCTCTCCGTTGACAACGCTTGTGCCTTACAAGATACAATTTGGGAGATGGCAAAAACCACAGACATCGTCTCCAGTTACTTCAATCGTTCAGATGTTAAAGCTTTGATGGGAAATCTGACGAATTACTGTGGAGAAGATATCAATCCAGAGAACCTGTGGATCCTTTTTAACGCTCTGAAAATTGAAAAGCAGTACTATCCATTGAAATTCCAGCAGACGACTCCATGGTATTCTGACAGTTTGTTTGAACAGATAGATATTGTCAATTCGCA</canonical>
            <polymorphic>ACACCAACTGAAACCTATCATAACGATCAGTTCAAAGAACAGGATTGGGTGTTTGGAGGAGGTGGATGGGGTCAATTGACACCGGTAAACTTTGATACATTGAGATATTTCCCAACTTCTTTTTTAGATTGGGATGAGACAGCACATGCAATTGGGTCAAAAACTAAGAGCTCGTTATGTTAACGGCCAACCTTATCAATTCCTTAACCGACGTTACGATCAACAAGAAATTTTTGTTAGATCTACTGATAAAAATAGAACTCTACTTTCGGCTTACTCGAATATGGTTGGGATGTACGGAAGTAATAACGAGAATGTCTCACTCCCAGGTACTGAAGAAATACCATAAAACCTGTAATAAAAGGGCCACTACATTGTCAAGTTTGAGCTAATTCATCTCGGTTCTTGTTAAAGATACCAAAAAGTGGTCAACTAAAAAAATGTTCATCATAATATCAGCAACATTTATCGATTGACAAACTTTTGATATTTTTCAAAGRAACCGAGATAATTGAGATTAAAATACAAGTAAAGGGTGAGCAGTTGAAGGCTACCCATTTTTAAAACCGACCTAAATTGTAAAACTGTTACAGGATATGACTATCCGGACGTTCCTGGGTGGCCAGTAGGCTTTGTCCCAATTCCAATTCACACTATTCCTGATGCCGAAGATCATGTGAGACTTTTTAAATTCATTTTTCGAACTCGTAGAATTTCAATTGCAGCTCCTCTCCGTTGACAACGCTTGTGCCTTACAAGATACAATTTGGGAGATGGCAAAAACCACAGACATCGTCTCCAGTTACTTCAATCGTTCAGATGTTAAAGCTTTGATGGGAAATCTGACGAATTACTGTGGAGAAGATATCAATCCAGAGAACCTGTGGATCCTTTTTAACGCTCTGAAAATTGAAAAGCAGTACTATCCATTGAAATTCCAGCAGACGACTCCATGGTATTCTGACAGTTTGTTTGAACAGATAGATATTGTCAATTCGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>501 387 112</canonical_bands>
                <polymorphic_bands>888 112</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGTCTCACTCCCAGGTACT</pcr_primer_p1>
		<pcr_primer_p2>TAAAAATGGGTAGCCTTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATGTCTCACTCCCAGGTACTGAAGAAATACCATAAAACCTGTAATAAAAGGGCCACTACATTGTCAAGTTTGAGCTAATTCATCTCGGTTCTTGTTAAAGATACCAAAAAGTGGTCAACTAAAAAAATGTTCATCATAATATCAGCAACATTTATCGATTGACAAACTTTTGATATTTTTCAAAGGAACCGAGATAATTGAGATTAAAATACAAGTAAAGGGTGAGCAGTTGAAGGCTACCCATTTTTA</canonical_amplicon>
		<polymorphic_amplicon>AATGTCTCACTCCCAGGTACTGAAGAAATACCATAAAACCTGTAATAAAAGGGCCACTACATTGTCAAGTTTGAGCTAATTCATCTCGGTTCTTGTTAAAGATACCAAAAAGTGGTCAACTAAAAAAATGTTCATCATAATATCAGCAACATTTATCGATTGACAAACTTTTGATATTTTTCAAAGRAACCGAGATAATTGAGATTAAAATACAAGTAAAGGGTGAGCAGTTGAAGGCTACCCATTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30670</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>401631</contig_pos>
        <strand>+</strand>
        <context>AGTTACTTCA[A/G]TCGTTCAGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACAATTTGGGAGATGGCAAAAACCACAGACATCGTCTCCAGTTACTTCA</left_flank>
        <right_flank>TCGTTCAGATGTTAAAGCTTTGATGGGAAATCTGACGAATTACTGTGGAG</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATGTCTCACTCCCAGGTACTGAAGAAATACCATAAAACCTGTAATAAAAGGGCCACTACATTGTCAAGTTTGAGCTAATTCATCTCGGTTCTTGTTAAAGATACCAAAAAGTGGTCAACTAAAAAAATGTTCATCATAATATCAGCAACATTTATCGATTGACAAACTTTTGATATTTTTCAAAGGAACCGAGATAATTGAGATTAAAATACAAGTAAAGGGTGAGCAGTTGAAGGCTACCCATTTTTAAAACCGACCTAAATTGTAAAACTGTTACAGGATATGACTATCCGGACGTTCCTGGGTGGCCAGTAGGCTTTGTCCCAATTCCAATTCACACTATTCCTGATGCCGAAGATCATGTGAGACTTTTTAAATTCATTTTTCGAACTCGTAGAATTTCAATTGCAGCTCCTCTCCGTTGACAACGCTTGTGCCTTACAAGATACAATTTGGGAGATGGCAAAAACCACAGACATCGTCTCCAGTTACTTCAATCGTTCAGATGTTAAAGCTTTGATGGGAAATCTGACGAATTACTGTGGAGAAGATATCAATCCAGAGAACCTGTGGATCCTTTTTAACGCTCTGAAAATTGAAAAGCAGTACTATCCATTGAAATTCCAGCAGACGACTCCATGGTATTCTGACAGTTTGTTTGAACAGATAGATATTGTCAATTCGCAAGTTCAAGATTTCCAGAATGGATTGGGATTAGAAGGTGAAATCTGAGAAAGTTCTGAACTGAAATCGATTTTAGGTGTGATTAAAAATGGAATCGATATTGGAAAGTATCTTCGAAAGATTCGTGGAGGGACCTTGGTCAATGATATTTACAATCATATGAATAGAAAAACGCAGTGTGCTTCGAACAACGGAAAAGAGTGTACATACACTAATAGATTGAAATTCTTCGCATACTCTGCTGTGAGTTTTCTTTGATAGACGCATATTTGCAGCCTGCAGTCGCAGTCCAATAAGATCAAAATGTTTCTGA</canonical>
            <polymorphic>AGAATGTCTCACTCCCAGGTACTGAAGAAATACCATAAAACCTGTAATAAAAGGGCCACTACATTGTCAAGTTTGAGCTAATTCATCTCGGTTCTTGTTAAAGATACCAAAAAGTGGTCAACTAAAAAAATGTTCATCATAATATCAGCAACATTTATCGATTGACAAACTTTTGATATTTTTCAAAGGAACCGAGATAATTGAGATTAAAATACAAGTAAAGGGTGAGCAGTTGAAGGCTACCCATTTTTAAAACCGACCTAAATTGTAAAACTGTTACAGGATATGACTATCCGGACGTTCCTGGGTGGCCAGTAGGCTTTGTCCCAATTCCAATTCACACTATTCCTGATGCCGAAGATCATGTGAGACTTTTTAAATTCATTTTTCGAACTCGTAGAATTTCAATTGCAGCTCCTCTCCGTTGACAACGCTTGTGCCTTACAAGATACAATTTGGGAGATGGCAAAAACCACAGACATCGTCTCCAGTTACTTCARTCGTTCAGATGTTAAAGCTTTGATGGGAAATCTGACGAATTACTGTGGAGAAGATATCAATCCAGAGAACCTGTGGATCCTTTTTAACGCTCTGAAAATTGAAAAGCAGTACTATCCATTGAAATTCCAGCAGACGACTCCATGGTATTCTGACAGTTTGTTTGAACAGATAGATATTGTCAATTCGCAAGTTCAAGATTTCCAGAATGGATTGGGATTAGAAGGTGAAATCTGAGAAAGTTCTGAACTGAAATCGATTTTAGGTGTGATTAAAAATGGAATCGATATTGGAAAGTATCTTCGAAAGATTCGTGGAGGGACCTTGGTCAATGATATTTACAATCATATGAATAGAAAAACGCAGTGTGCTTCGAACAACGGAAAAGAGTGTACATACACTAATAGATTGAAATTCTTCGCATACTCTGCTGTGAGTTTTCTTTGATAGACGCATATTTGCAGCCTGCAGTCGCAGTCCAATAAGATCAAAATGTTTCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACAAGATACAATTTGGGAGATG</pcr_primer_p1>
		<pcr_primer_p2>AACTTGCGAATTGACAATATCTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TACAAGATACAATTTGGGAGATGGCAAAAACCACAGACATCGTCTCCAGTTACTTCAATCGTTCAGATGTTAAAGCTTTGATGGGAAATCTGACGAATTACTGTGGAGAAGATATCAATCCAGAGAACCTGTGGATCCTTTTTAACGCTCTGAAAATTGAAAAGCAGTACTATCCATTGAAATTCCAGCAGACGACTCCATGGTATTCTGACAGTTTGTTTGAACAGATAGATATTGTCAATTCGCAAGTT</canonical_amplicon>
		<polymorphic_amplicon>TACAAGATACAATTTGGGAGATGGCAAAAACCACAGACATCGTCTCCAGTTACTTCARTCGTTCAGATGTTAAAGCTTTGATGGGAAATCTGACGAATTACTGTGGAGAAGATATCAATCCAGAGAACCTGTGGATCCTTTTTAACGCTCTGAAAATTGAAAAGCAGTACTATCCATTGAAATTCCAGCAGACGACTCCATGGTATTCTGACAGTTTGTTTGAACAGATAGATATTGTCAATTCGCAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30671</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>401710</contig_pos>
        <strand>+</strand>
        <context>ACCTGTGGAT[C/T]CTTTTTAACG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCTGACGAATTACTGTGGAGAAGATATCAATCCAGAGAACCTGTGGAT</left_flank>
        <right_flank>CTTTTTAACGCTCTGAAAATTGAAAAGCAGTACTATCCATTGAAATTCCA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTCATCTCGGTTCTTGTTAAAGATACCAAAAAGTGGTCAACTAAAAAAATGTTCATCATAATATCAGCAACATTTATCGATTGACAAACTTTTGATATTTTTCAAAGGAACCGAGATAATTGAGATTAAAATACAAGTAAAGGGTGAGCAGTTGAAGGCTACCCATTTTTAAAACCGACCTAAATTGTAAAACTGTTACAGGATATGACTATCCGGACGTTCCTGGGTGGCCAGTAGGCTTTGTCCCAATTCCAATTCACACTATTCCTGATGCCGAAGATCATGTGAGACTTTTTAAATTCATTTTTCGAACTCGTAGAATTTCAATTGCAGCTCCTCTCCGTTGACAACGCTTGTGCCTTACAAGATACAATTTGGGAGATGGCAAAAACCACAGACATCGTCTCCAGTTACTTCAATCGTTCAGATGTTAAAGCTTTGATGGGAAATCTGACGAATTACTGTGGAGAAGATATCAATCCAGAGAACCTGTGGATCCTTTTTAACGCTCTGAAAATTGAAAAGCAGTACTATCCATTGAAATTCCAGCAGACGACTCCATGGTATTCTGACAGTTTGTTTGAACAGATAGATATTGTCAATTCGCAAGTTCAAGATTTCCAGAATGGATTGGGATTAGAAGGTGAAATCTGAGAAAGTTCTGAACTGAAATCGATTTTAGGTGTGATTAAAAATGGAATCGATATTGGAAAGTATCTTCGAAAGATTCGTGGAGGGACCTTGGTCAATGATATTTACAATCATATGAATAGAAAAACGCAGTGTGCTTCGAACAACGGAAAAGAGTGTACATACACTAATAGATTGAAATTCTTCGCATACTCTGCTGTGAGTTTTCTTTGATAGACGCATATTTGCAGCCTGCAGTCGCAGTCCAATAAGATCAAAATGTTTCTGATCGAACTATTTTCAGCATGACACTACACTATACGCCCTTTTCTCTTTGCTCGGAGTCGCTCATCTAGCTGTTCAGCCAC</canonical>
            <polymorphic>AATTCATCTCGGTTCTTGTTAAAGATACCAAAAAGTGGTCAACTAAAAAAATGTTCATCATAATATCAGCAACATTTATCGATTGACAAACTTTTGATATTTTTCAAAGGAACCGAGATAATTGAGATTAAAATACAAGTAAAGGGTGAGCAGTTGAAGGCTACCCATTTTTAAAACCGACCTAAATTGTAAAACTGTTACAGGATATGACTATCCGGACGTTCCTGGGTGGCCAGTAGGCTTTGTCCCAATTCCAATTCACACTATTCCTGATGCCGAAGATCATGTGAGACTTTTTAAATTCATTTTTCGAACTCGTAGAATTTCAATTGCAGCTCCTCTCCGTTGACAACGCTTGTGCCTTACAAGATACAATTTGGGAGATGGCAAAAACCACAGACATCGTCTCCAGTTACTTCAATCGTTCAGATGTTAAAGCTTTGATGGGAAATCTGACGAATTACTGTGGAGAAGATATCAATCCAGAGAACCTGTGGATYCTTTTTAACGCTCTGAAAATTGAAAAGCAGTACTATCCATTGAAATTCCAGCAGACGACTCCATGGTATTCTGACAGTTTGTTTGAACAGATAGATATTGTCAATTCGCAAGTTCAAGATTTCCAGAATGGATTGGGATTAGAAGGTGAAATCTGAGAAAGTTCTGAACTGAAATCGATTTTAGGTGTGATTAAAAATGGAATCGATATTGGAAAGTATCTTCGAAAGATTCGTGGAGGGACCTTGGTCAATGATATTTACAATCATATGAATAGAAAAACGCAGTGTGCTTCGAACAACGGAAAAGAGTGTACATACACTAATAGATTGAAATTCTTCGCATACTCTGCTGTGAGTTTTCTTTGATAGACGCATATTTGCAGCCTGCAGTCGCAGTCCAATAAGATCAAAATGTTTCTGATCGAACTATTTTCAGCATGACACTACACTATACGCCCTTTTCTCTTTGCTCGGAGTCGCTCATCTAGCTGTTCAGCCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGATCC</site>
                <isoschizomers>
                    <enzyme>BamHI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>408 280 216 81 15</canonical_bands>
                <polymorphic_bands>624 280 81 15</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>387 260 242 111</canonical_bands>
                <polymorphic_bands>629 260 111</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACAAGATACAATTTGGGAGATG</pcr_primer_p1>
		<pcr_primer_p2>AACTTGCGAATTGACAATATCTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TACAAGATACAATTTGGGAGATGGCAAAAACCACAGACATCGTCTCCAGTTACTTCAATCGTTCAGATGTTAAAGCTTTGATGGGAAATCTGACGAATTACTGTGGAGAAGATATCAATCCAGAGAACCTGTGGATCCTTTTTAACGCTCTGAAAATTGAAAAGCAGTACTATCCATTGAAATTCCAGCAGACGACTCCATGGTATTCTGACAGTTTGTTTGAACAGATAGATATTGTCAATTCGCAAGTT</canonical_amplicon>
		<polymorphic_amplicon>TACAAGATACAATTTGGGAGATGGCAAAAACCACAGACATCGTCTCCAGTTACTTCAATCGTTCAGATGTTAAAGCTTTGATGGGAAATCTGACGAATTACTGTGGAGAAGATATCAATCCAGAGAACCTGTGGATYCTTTTTAACGCTCTGAAAATTGAAAAGCAGTACTATCCATTGAAATTCCAGCAGACGACTCCATGGTATTCTGACAGTTTGTTTGAACAGATAGATATTGTCAATTCGCAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30672</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>402610</contig_pos>
        <strand>+</strand>
        <context>TATTTATTTG[C/T]CTYTAATTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCTTCTCCGTTCTCATCTCTTCTGATTCTCGCTCTCTTCTATTTATTTG</left_flank>
        <right_flank>CTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAGATCAAAATGTTTCTGATCGAACTATTTTCAGCATGACACTACACTATACGCCCTTTTCTCTTTGCTCGGAGTCGCTCATCTAGCTGTTCAGCCACGTGGATATCCACTGTATTCGGCATGTGTTATCATGGAACAATGGCAAGATTTACAAACAAATCAGACTTATTTCAAGGTGGGTTCTCTCCTTGGTTTTTAGAAATCTTATTTATCAATTTCAGATGATCTACCATCGTCACGAAAACGATACTTTGAATAATGTGATTACTTCTGGAATCCCTGGATGCAATGGAAATGATTATTGTCCACTGTCAGTTCTCAAGAACTATTCCGACGTCTATAAACCAGAAATGGAAATGAATCAGGTAAATTCAGAAGGTTCTAAAAAATTATGTGATGATAAAACTTTCAGTGGTGCAACTATAACATGTTTGGATCTTCTGCCATGGCTTCTCCGTTCTCATCTCTTCTGATTCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTTTTTATTTCCTCCCTGCTCCGAACTTCTCTCTATTTTCTGAAAACTCGAAATCACAAAACTCCCTTTTTTCAGGGTAAATTTCACTATGGTTTCTGCCATTTCAATTATCGGGCTCTTTGCTCTCACGGGTTTTTCTACTTCTTATACAAATGGTACTAAGGAATTGGTTTTTGTTCAAACGGTAATAAACATTCGAAAAAATGATTCAATGAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGTTCCCAACTGATCC</canonical>
            <polymorphic>ATAAGATCAAAATGTTTCTGATCGAACTATTTTCAGCATGACACTACACTATACGCCCTTTTCTCTTTGCTCGGAGTCGCTCATCTAGCTGTTCAGCCACGTGGATATCCACTGTATTCGGCATGTGTTATCATGGAACAATGGCAAGATTTACAAACAAATCAGACTTATTTCAAGGTGGGTTCTCTCCTTGGTTTTTAGAAATCTTATTTATCAATTTCAGATGATCTACCATCGTCACGAAAACGATACTTTGAATAATGTGATTACTTCTGGAATCCCTGGATGCAATGGAAATGATTATTGTCCACTGTCAGTTCTCAAGAACTATTCCGACGTCTATAAACCAGAAATGGAAATGAATCAGGTAAATTCAGAAGGTTCTAAAAAATTATGTGATGATAAAACTTTCAGTGGTGCAACTATAACATGTTTGGATCTTCTGCCATGGCTTCTCCGTTCTCATCTCTTCTGATTCTCGCTCTCTTCTATTTATTTGYCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTTTTTATTTCCTCCCTGCTCCGAACTTCTCTCTATTTTCTGAAAACTCGAAATCACAAAACTCCCTTTTTTCAGGGTAAATTTCACTATGGTTTCTGCCATTTCAATTATCGGGCTCTTTGCTCTCACGGGTTTTTCTACTTCTTATACAAATGGTACTAAGGAATTGGTTTTTGTTCAAACGGTAATAAACATTCGAAAAAATGATTCAATGAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGTTCCCAACTGATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTCAGTGGTGCAACTATAAC</pcr_primer_p1>
		<pcr_primer_p2>GTGATCAATGCTGTTTTATCATC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>ACTTTCAGTGGTGCAACTATAACATGTTTGGATCTTCTGCCATGGCTTCTCCGTTCTCATCTCTTCTGATTCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCAC</canonical_amplicon>
		<polymorphic_amplicon>ACTTTCAGTGGTGCAACTATAACATGTTTGGATCTTCTGCCATGGCTTCTCCGTTCTCATCTCTTCTGATTCTCGCTCTCTTCTATTTATTTGYCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30673</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>402613</contig_pos>
        <strand>+</strand>
        <context>TTATTTGYCT[C/T]TAATTAATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTCCGTTCTCATCTCTTCTGATTCTCGCTCTCTTCTATTTATTTGCCT</left_flank>
        <right_flank>TAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATCAAAATGTTTCTGATCGAACTATTTTCAGCATGACACTACACTATACGCCCTTTTCTCTTTGCTCGGAGTCGCTCATCTAGCTGTTCAGCCACGTGGATATCCACTGTATTCGGCATGTGTTATCATGGAACAATGGCAAGATTTACAAACAAATCAGACTTATTTCAAGGTGGGTTCTCTCCTTGGTTTTTAGAAATCTTATTTATCAATTTCAGATGATCTACCATCGTCACGAAAACGATACTTTGAATAATGTGATTACTTCTGGAATCCCTGGATGCAATGGAAATGATTATTGTCCACTGTCAGTTCTCAAGAACTATTCCGACGTCTATAAACCAGAAATGGAAATGAATCAGGTAAATTCAGAAGGTTCTAAAAAATTATGTGATGATAAAACTTTCAGTGGTGCAACTATAACATGTTTGGATCTTCTGCCATGGCTTCTCCGTTCTCATCTCTTCTGATTCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTTTTTATTTCCTCCCTGCTCCGAACTTCTCTCTATTTTCTGAAAACTCGAAATCACAAAACTCCCTTTTTTCAGGGTAAATTTCACTATGGTTTCTGCCATTTCAATTATCGGGCTCTTTGCTCTCACGGGTTTTTCTACTTCTTATACAAATGGTACTAAGGAATTGGTTTTTGTTCAAACGGTAATAAACATTCGAAAAAATGATTCAATGAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGTTCCCAACTGATCCATA</canonical>
            <polymorphic>AGATCAAAATGTTTCTGATCGAACTATTTTCAGCATGACACTACACTATACGCCCTTTTCTCTTTGCTCGGAGTCGCTCATCTAGCTGTTCAGCCACGTGGATATCCACTGTATTCGGCATGTGTTATCATGGAACAATGGCAAGATTTACAAACAAATCAGACTTATTTCAAGGTGGGTTCTCTCCTTGGTTTTTAGAAATCTTATTTATCAATTTCAGATGATCTACCATCGTCACGAAAACGATACTTTGAATAATGTGATTACTTCTGGAATCCCTGGATGCAATGGAAATGATTATTGTCCACTGTCAGTTCTCAAGAACTATTCCGACGTCTATAAACCAGAAATGGAAATGAATCAGGTAAATTCAGAAGGTTCTAAAAAATTATGTGATGATAAAACTTTCAGTGGTGCAACTATAACATGTTTGGATCTTCTGCCATGGCTTCTCCGTTCTCATCTCTTCTGATTCTCGCTCTCTTCTATTTATTTGCCTYTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTTTTTATTTCCTCCCTGCTCCGAACTTCTCTCTATTTTCTGAAAACTCGAAATCACAAAACTCCCTTTTTTCAGGGTAAATTTCACTATGGTTTCTGCCATTTCAATTATCGGGCTCTTTGCTCTCACGGGTTTTTCTACTTCTTATACAAATGGTACTAAGGAATTGGTTTTTGTTCAAACGGTAATAAACATTCGAAAAAATGATTCAATGAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGTTCCCAACTGATCCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTCAGTGGTGCAACTATAAC</pcr_primer_p1>
		<pcr_primer_p2>GTGATCAATGCTGTTTTATCATC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>ACTTTCAGTGGTGCAACTATAACATGTTTGGATCTTCTGCCATGGCTTCTCCGTTCTCATCTCTTCTGATTCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCAC</canonical_amplicon>
		<polymorphic_amplicon>ACTTTCAGTGGTGCAACTATAACATGTTTGGATCTTCTGCCATGGCTTCTCCGTTCTCATCTCTTCTGATTCTCGCTCTCTTCTATTTATTTGCCTYTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30674</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>402625</contig_pos>
        <strand>+</strand>
        <context>AATTAATTTT[A/G]CCGCTCCTTY</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCTCTTCTGATTCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTT</left_flank>
        <right_flank>CCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGATCGAACTATTTTCAGCATGACACTACACTATACGCCCTTTTCTCTTTGCTCGGAGTCGCTCATCTAGCTGTTCAGCCACGTGGATATCCACTGTATTCGGCATGTGTTATCATGGAACAATGGCAAGATTTACAAACAAATCAGACTTATTTCAAGGTGGGTTCTCTCCTTGGTTTTTAGAAATCTTATTTATCAATTTCAGATGATCTACCATCGTCACGAAAACGATACTTTGAATAATGTGATTACTTCTGGAATCCCTGGATGCAATGGAAATGATTATTGTCCACTGTCAGTTCTCAAGAACTATTCCGACGTCTATAAACCAGAAATGGAAATGAATCAGGTAAATTCAGAAGGTTCTAAAAAATTATGTGATGATAAAACTTTCAGTGGTGCAACTATAACATGTTTGGATCTTCTGCCATGGCTTCTCCGTTCTCATCTCTTCTGATTCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTTTTTATTTCCTCCCTGCTCCGAACTTCTCTCTATTTTCTGAAAACTCGAAATCACAAAACTCCCTTTTTTCAGGGTAAATTTCACTATGGTTTCTGCCATTTCAATTATCGGGCTCTTTGCTCTCACGGGTTTTTCTACTTCTTATACAAATGGTACTAAGGAATTGGTTTTTGTTCAAACGGTAATAAACATTCGAAAAAATGATTCAATGAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGTTCCCAACTGATCCATATCAAGAGAGCGC</canonical>
            <polymorphic>TTCTGATCGAACTATTTTCAGCATGACACTACACTATACGCCCTTTTCTCTTTGCTCGGAGTCGCTCATCTAGCTGTTCAGCCACGTGGATATCCACTGTATTCGGCATGTGTTATCATGGAACAATGGCAAGATTTACAAACAAATCAGACTTATTTCAAGGTGGGTTCTCTCCTTGGTTTTTAGAAATCTTATTTATCAATTTCAGATGATCTACCATCGTCACGAAAACGATACTTTGAATAATGTGATTACTTCTGGAATCCCTGGATGCAATGGAAATGATTATTGTCCACTGTCAGTTCTCAAGAACTATTCCGACGTCTATAAACCAGAAATGGAAATGAATCAGGTAAATTCAGAAGGTTCTAAAAAATTATGTGATGATAAAACTTTCAGTGGTGCAACTATAACATGTTTGGATCTTCTGCCATGGCTTCTCCGTTCTCATCTCTTCTGATTCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTRCCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTTTTTATTTCCTCCCTGCTCCGAACTTCTCTCTATTTTCTGAAAACTCGAAATCACAAAACTCCCTTTTTTCAGGGTAAATTTCACTATGGTTTCTGCCATTTCAATTATCGGGCTCTTTGCTCTCACGGGTTTTTCTACTTCTTATACAAATGGTACTAAGGAATTGGTTTTTGTTCAAACGGTAATAAACATTCGAAAAAATGATTCAATGAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGTTCCCAACTGATCCATATCAAGAGAGCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTCTCATCTCTTCTGATTCT</pcr_primer_p1>
		<pcr_primer_p2>TGCAATTTTATCAGTTGACTACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGTTCTCATCTCTTCTGATTCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCA</canonical_amplicon>
		<polymorphic_amplicon>CGTTCTCATCTCTTCTGATTCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTRCCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30675</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>402635</contig_pos>
        <strand>+</strand>
        <context>RCCGCTCCTT[C/T]ATTTTGTACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTT</left_flank>
        <right_flank>ATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTATTTTCAGCATGACACTACACTATACGCCCTTTTCTCTTTGCTCGGAGTCGCTCATCTAGCTGTTCAGCCACGTGGATATCCACTGTATTCGGCATGTGTTATCATGGAACAATGGCAAGATTTACAAACAAATCAGACTTATTTCAAGGTGGGTTCTCTCCTTGGTTTTTAGAAATCTTATTTATCAATTTCAGATGATCTACCATCGTCACGAAAACGATACTTTGAATAATGTGATTACTTCTGGAATCCCTGGATGCAATGGAAATGATTATTGTCCACTGTCAGTTCTCAAGAACTATTCCGACGTCTATAAACCAGAAATGGAAATGAATCAGGTAAATTCAGAAGGTTCTAAAAAATTATGTGATGATAAAACTTTCAGTGGTGCAACTATAACATGTTTGGATCTTCTGCCATGGCTTCTCCGTTCTCATCTCTTCTGATTCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTTTTTATTTCCTCCCTGCTCCGAACTTCTCTCTATTTTCTGAAAACTCGAAATCACAAAACTCCCTTTTTTCAGGGTAAATTTCACTATGGTTTCTGCCATTTCAATTATCGGGCTCTTTGCTCTCACGGGTTTTTCTACTTCTTATACAAATGGTACTAAGGAATTGGTTTTTGTTCAAACGGTAATAAACATTCGAAAAAATGATTCAATGAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGTTCCCAACTGATCCATATCAAGAGAGCGCATGGACATTT</canonical>
            <polymorphic>ACTATTTTCAGCATGACACTACACTATACGCCCTTTTCTCTTTGCTCGGAGTCGCTCATCTAGCTGTTCAGCCACGTGGATATCCACTGTATTCGGCATGTGTTATCATGGAACAATGGCAAGATTTACAAACAAATCAGACTTATTTCAAGGTGGGTTCTCTCCTTGGTTTTTAGAAATCTTATTTATCAATTTCAGATGATCTACCATCGTCACGAAAACGATACTTTGAATAATGTGATTACTTCTGGAATCCCTGGATGCAATGGAAATGATTATTGTCCACTGTCAGTTCTCAAGAACTATTCCGACGTCTATAAACCAGAAATGGAAATGAATCAGGTAAATTCAGAAGGTTCTAAAAAATTATGTGATGATAAAACTTTCAGTGGTGCAACTATAACATGTTTGGATCTTCTGCCATGGCTTCTCCGTTCTCATCTCTTCTGATTCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTYATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTTTTTATTTCCTCCCTGCTCCGAACTTCTCTCTATTTTCTGAAAACTCGAAATCACAAAACTCCCTTTTTTCAGGGTAAATTTCACTATGGTTTCTGCCATTTCAATTATCGGGCTCTTTGCTCTCACGGGTTTTTCTACTTCTTATACAAATGGTACTAAGGAATTGGTTTTTGTTCAAACGGTAATAAACATTCGAAAAAATGATTCAATGAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGTTCCCAACTGATCCATATCAAGAGAGCGCATGGACATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATTCTCGCTCTCTTCTATTTA</pcr_primer_p1>
		<pcr_primer_p2>GCGTAGAGTAATGCAATTTTATC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TGATTCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGC</canonical_amplicon>
		<polymorphic_amplicon>TGATTCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTYATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30676</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>402662</contig_pos>
        <strand>+</strand>
        <context>TTGAAACAGT[A/T]ACTGAATAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGT</left_flank>
        <right_flank>ACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACAC</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGCCCTTTTCTCTTTGCTCGGAGTCGCTCATCTAGCTGTTCAGCCACGTGGATATCCACTGTATTCGGCATGTGTTATCATGGAACAATGGCAAGATTTACAAACAAATCAGACTTATTTCAAGGTGGGTTCTCTCCTTGGTTTTTAGAAATCTTATTTATCAATTTCAGATGATCTACCATCGTCACGAAAACGATACTTTGAATAATGTGATTACTTCTGGAATCCCTGGATGCAATGGAAATGATTATTGTCCACTGTCAGTTCTCAAGAACTATTCCGACGTCTATAAACCAGAAATGGAAATGAATCAGGTAAATTCAGAAGGTTCTAAAAAATTATGTGATGATAAAACTTTCAGTGGTGCAACTATAACATGTTTGGATCTTCTGCCATGGCTTCTCCGTTCTCATCTCTTCTGATTCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTTTTTATTTCCTCCCTGCTCCGAACTTCTCTCTATTTTCTGAAAACTCGAAATCACAAAACTCCCTTTTTTCAGGGTAAATTTCACTATGGTTTCTGCCATTTCAATTATCGGGCTCTTTGCTCTCACGGGTTTTTCTACTTCTTATACAAATGGTACTAAGGAATTGGTTTTTGTTCAAACGGTAATAAACATTCGAAAAAATGATTCAATGAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGTTCCCAACTGATCCATATCAAGAGAGCGCATGGACATTTGGAGGTGGTGGATGGGGACAATTGAGT</canonical>
            <polymorphic>ACGCCCTTTTCTCTTTGCTCGGAGTCGCTCATCTAGCTGTTCAGCCACGTGGATATCCACTGTATTCGGCATGTGTTATCATGGAACAATGGCAAGATTTACAAACAAATCAGACTTATTTCAAGGTGGGTTCTCTCCTTGGTTTTTAGAAATCTTATTTATCAATTTCAGATGATCTACCATCGTCACGAAAACGATACTTTGAATAATGTGATTACTTCTGGAATCCCTGGATGCAATGGAAATGATTATTGTCCACTGTCAGTTCTCAAGAACTATTCCGACGTCTATAAACCAGAAATGGAAATGAATCAGGTAAATTCAGAAGGTTCTAAAAAATTATGTGATGATAAAACTTTCAGTGGTGCAACTATAACATGTTTGGATCTTCTGCCATGGCTTCTCCGTTCTCATCTCTTCTGATTCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTWACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTTTTTATTTCCTCCCTGCTCCGAACTTCTCTCTATTTTCTGAAAACTCGAAATCACAAAACTCCCTTTTTTCAGGGTAAATTTCACTATGGTTTCTGCCATTTCAATTATCGGGCTCTTTGCTCTCACGGGTTTTTCTACTTCTTATACAAATGGTACTAAGGAATTGGTTTTTGTTCAAACGGTAATAAACATTCGAAAAAATGATTCAATGAATGAATTCCAGCTCTGGAGACATGGAGATCGTTCACCAACTAAAACGTTCCCAACTGATCCATATCAAGAGAGCGCATGGACATTTGGAGGTGGTGGATGGGGACAATTGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCGCTCTCTTCTATTTATTTG</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAAAGTGCGTAGAGTAATG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTTACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>TCTCGCTCTCTTCTATTTATTTGCCTCTAATTAATTTTACCGCTCCTTCATTTTGTACATTACCATTGAAACAGTWACTGAATAAACTTCGTTTGTCCATGTAAATTGACTTAAAGTTTTAGACACTTATTATAGAAGCAAATTGATGATAAAACAGCATTGATCACACTATCGAAAAAAGAAGAGTATATTGAAGTGGCAGAGAATGGTAGTCAACTGATAAAATTGCATTACTCTACGCACTTTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30677</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>405411</contig_pos>
        <strand>+</strand>
        <context>AAGAATCAAA[A/T]CAAAATTCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCGAAGAAGATAGCTGCGACTCTGAAAGGAATCATCGTCAAGAATCAAA</left_flank>
        <right_flank>CAAAATTCAATTTTTCTTACGACGCGAAATCTGGATCATCATCCTTGACC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACTCGGATCTGAACAAATATTCCGGTGTGAGCACAGTATCGATGCTTCTCATTGCAGGTAATTTTAATAAACAAAAAAGTAATTCAAAGTTGAATTTTCAGTGATCCTGGCAGTTCGAAACGATTTCTTCGGTCTGTTTTAAGACTAGAATGGATGAAAAGAATATGTAATTTATTACTTGTTTTCATGAAATACTCGTAACCAAATAATAACAAATTTGTTTCAAAATAATAATTAAAAAAACAGAAATCATCGAGATTTTTTAGATGTGAAAGTCTTCAACTCTTCCACACATTTCTCCAACATTTTAATTCCTTCTGTTTTTCGAACCACTTGATCATTCAACCAGCTTTGTAGGGTAACTCTGGTTGACAGAAAGTGCTCCAGTGGATTTTCACGAAGATTACAGAAAAATTGGTCTCTAGCATAAGCGTAGTAGTTTTTCTCATCGAAGAAGATAGCTGCGACTCTGAAAGGAATCATCGTCAAGAATCAAAACAAAATTCAATTTTTCTTACGACGCGAAATCTGGATCATCATCCTTGACCGTCTTCACCATGGTAACTTTGGCCTGTGGATCCACGTTTACGGTTTTAATTCTTTCGATGAGAGCAGCTGAACAATCATTCAGAACTGCAGCAAAACAGTGATTGGTCCCGATCTCCTGTCCTGAAATTTTGAAAAATACGGTTTTCCCCTTTTTCAAAGCAAAGAAATTATACCTGCTAACACTTTGTAAACATCGTTTTTTCCCTTGATTGTGATGATTTCTAGATAGACATTTTTTGTTTTTTCTCCAATTCTTGGATATCTACTAGCGATTCTGTCGGTCAACTCGTGAACCATACGGCGAGCTTCATTGATTGAATGAGTTGATAATTTCAGAATAGATGACATGTGTCCAGAGGAATAGCTGAATTTTGAAAACAAATTTTGAACGAACTCCTTTAATCTGTTTAGGATCAATTTATATCTCCTGTTTTTTATCCAGTATTCTT</canonical>
            <polymorphic>CTACTCGGATCTGAACAAATATTCCGGTGTGAGCACAGTATCGATGCTTCTCATTGCAGGTAATTTTAATAAACAAAAAAGTAATTCAAAGTTGAATTTTCAGTGATCCTGGCAGTTCGAAACGATTTCTTCGGTCTGTTTTAAGACTAGAATGGATGAAAAGAATATGTAATTTATTACTTGTTTTCATGAAATACTCGTAACCAAATAATAACAAATTTGTTTCAAAATAATAATTAAAAAAACAGAAATCATCGAGATTTTTTAGATGTGAAAGTCTTCAACTCTTCCACACATTTCTCCAACATTTTAATTCCTTCTGTTTTTCGAACCACTTGATCATTCAACCAGCTTTGTAGGGTAACTCTGGTTGACAGAAAGTGCTCCAGTGGATTTTCACGAAGATTACAGAAAAATTGGTCTCTAGCATAAGCGTAGTAGTTTTTCTCATCGAAGAAGATAGCTGCGACTCTGAAAGGAATCATCGTCAAGAATCAAAWCAAAATTCAATTTTTCTTACGACGCGAAATCTGGATCATCATCCTTGACCGTCTTCACCATGGTAACTTTGGCCTGTGGATCCACGTTTACGGTTTTAATTCTTTCGATGAGAGCAGCTGAACAATCATTCAGAACTGCAGCAAAACAGTGATTGGTCCCGATCTCCTGTCCTGAAATTTTGAAAAATACGGTTTTCCCCTTTTTCAAAGCAAAGAAATTATACCTGCTAACACTTTGTAAACATCGTTTTTTCCCTTGATTGTGATGATTTCTAGATAGACATTTTTTGTTTTTTCTCCAATTCTTGGATATCTACTAGCGATTCTGTCGGTCAACTCGTGAACCATACGGCGAGCTTCATTGATTGAATGAGTTGATAATTTCAGAATAGATGACATGTGTCCAGAGGAATAGCTGAATTTTGAAAACAAATTTTGAACGAACTCCTTTAATCTGTTTAGGATCAATTTATATCTCCTGTTTTTTATCCAGTATTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAACTCTGGTTGACAGAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>ATCGAAAGAATTAAAACCGTAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTAACTCTGGTTGACAGAAAGTGCTCCAGTGGATTTTCACGAAGATTACAGAAAAATTGGTCTCTAGCATAAGCGTAGTAGTTTTTCTCATCGAAGAAGATAGCTGCGACTCTGAAAGGAATCATCGTCAAGAATCAAAACAAAATTCAATTTTTCTTACGACGCGAAATCTGGATCATCATCCTTGACCGTCTTCACCATGGTAACTTTGGCCTGTGGATCCACGTTTACGGTTTTAATTCTTTCGAT</canonical_amplicon>
		<polymorphic_amplicon>GTAACTCTGGTTGACAGAAAGTGCTCCAGTGGATTTTCACGAAGATTACAGAAAAATTGGTCTCTAGCATAAGCGTAGTAGTTTTTCTCATCGAAGAAGATAGCTGCGACTCTGAAAGGAATCATCGTCAAGAATCAAAWCAAAATTCAATTTTTCTTACGACGCGAAATCTGGATCATCATCCTTGACCGTCTTCACCATGGTAACTTTGGCCTGTGGATCCACGTTTACGGTTTTAATTCTTTCGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30678</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>405593</contig_pos>
        <strand>+</strand>
        <context>CTGAAATTTT[A/G]AAAAATACGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAACTGCAGCAAAACAGTGATTGGTCCCGATCTCCTGTCCTGAAATTTT</left_flank>
        <right_flank>AAAAATACGGTTTTCCCCTTTTTCAAAGCAAAGAAATTATACCTGCTAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTCATGAAATACTCGTAACCAAATAATAACAAATTTGTTTCAAAATAATAATTAAAAAAACAGAAATCATCGAGATTTTTTAGATGTGAAAGTCTTCAACTCTTCCACACATTTCTCCAACATTTTAATTCCTTCTGTTTTTCGAACCACTTGATCATTCAACCAGCTTTGTAGGGTAACTCTGGTTGACAGAAAGTGCTCCAGTGGATTTTCACGAAGATTACAGAAAAATTGGTCTCTAGCATAAGCGTAGTAGTTTTTCTCATCGAAGAAGATAGCTGCGACTCTGAAAGGAATCATCGTCAAGAATCAAAACAAAATTCAATTTTTCTTACGACGCGAAATCTGGATCATCATCCTTGACCGTCTTCACCATGGTAACTTTGGCCTGTGGATCCACGTTTACGGTTTTAATTCTTTCGATGAGAGCAGCTGAACAATCATTCAGAACTGCAGCAAAACAGTGATTGGTCCCGATCTCCTGTCCTGAAATTTTGAAAAATACGGTTTTCCCCTTTTTCAAAGCAAAGAAATTATACCTGCTAACACTTTGTAAACATCGTTTTTTCCCTTGATTGTGATGATTTCTAGATAGACATTTTTTGTTTTTTCTCCAATTCTTGGATATCTACTAGCGATTCTGTCGGTCAACTCGTGAACCATACGGCGAGCTTCATTGATTGAATGAGTTGATAATTTCAGAATAGATGACATGTGTCCAGAGGAATAGCTGAATTTTGAAAACAAATTTTGAACGAACTCCTTTAATCTGTTTAGGATCAATTTATATCTCCTGTTTTTTATCCAGTATTCTTACTCAAACAAGCAATTCACCGCCATTCAAATTATCATTTGTTTTAAGCACTAAAAGCGCGATTTTTGCACTAAAAGCGGGATTTTTGAATCCGAAACTCATATATGTAACTCGGAAACTGGGGAGCGGATTCTAAAATTCTCAGTAGTGTCTGGAGAGGCTATTCTTAACCTATCCTGAAAT</canonical>
            <polymorphic>GTTTTCATGAAATACTCGTAACCAAATAATAACAAATTTGTTTCAAAATAATAATTAAAAAAACAGAAATCATCGAGATTTTTTAGATGTGAAAGTCTTCAACTCTTCCACACATTTCTCCAACATTTTAATTCCTTCTGTTTTTCGAACCACTTGATCATTCAACCAGCTTTGTAGGGTAACTCTGGTTGACAGAAAGTGCTCCAGTGGATTTTCACGAAGATTACAGAAAAATTGGTCTCTAGCATAAGCGTAGTAGTTTTTCTCATCGAAGAAGATAGCTGCGACTCTGAAAGGAATCATCGTCAAGAATCAAAACAAAATTCAATTTTTCTTACGACGCGAAATCTGGATCATCATCCTTGACCGTCTTCACCATGGTAACTTTGGCCTGTGGATCCACGTTTACGGTTTTAATTCTTTCGATGAGAGCAGCTGAACAATCATTCAGAACTGCAGCAAAACAGTGATTGGTCCCGATCTCCTGTCCTGAAATTTTRAAAAATACGGTTTTCCCCTTTTTCAAAGCAAAGAAATTATACCTGCTAACACTTTGTAAACATCGTTTTTTCCCTTGATTGTGATGATTTCTAGATAGACATTTTTTGTTTTTTCTCCAATTCTTGGATATCTACTAGCGATTCTGTCGGTCAACTCGTGAACCATACGGCGAGCTTCATTGATTGAATGAGTTGATAATTTCAGAATAGATGACATGTGTCCAGAGGAATAGCTGAATTTTGAAAACAAATTTTGAACGAACTCCTTTAATCTGTTTAGGATCAATTTATATCTCCTGTTTTTTATCCAGTATTCTTACTCAAACAAGCAATTCACCGCCATTCAAATTATCATTTGTTTTAAGCACTAAAAGCGCGATTTTTGCACTAAAAGCGGGATTTTTGAATCCGAAACTCATATATGTAACTCGGAAACTGGGGAGCGGATTCTAAAATTCTCAGTAGTGTCTGGAGAGGCTATTCTTAACCTATCCTGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGTTTACGGTTTTAATTCTTTC</pcr_primer_p1>
		<pcr_primer_p2>AATCGCTAGTAGATATCCAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ACGTTTACGGTTTTAATTCTTTCGATGAGAGCAGCTGAACAATCATTCAGAACTGCAGCAAAACAGTGATTGGTCCCGATCTCCTGTCCTGAAATTTTGAAAAATACGGTTTTCCCCTTTTTCAAAGCAAAGAAATTATACCTGCTAACACTTTGTAAACATCGTTTTTTCCCTTGATTGTGATGATTTCTAGATAGACATTTTTTGTTTTTTCTCCAATTCTTGGATATCTACTAGCGATT</canonical_amplicon>
		<polymorphic_amplicon>ACGTTTACGGTTTTAATTCTTTCGATGAGAGCAGCTGAACAATCATTCAGAACTGCAGCAAAACAGTGATTGGTCCCGATCTCCTGTCCTGAAATTTTRAAAAATACGGTTTTCCCCTTTTTCAAAGCAAAGAAATTATACCTGCTAACACTTTGTAAACATCGTTTTTTCCCTTGATTGTGATGATTTCTAGATAGACATTTTTTGTTTTTTCTCCAATTCTTGGATATCTACTAGCGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30679</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>405613</contig_pos>
        <strand>+</strand>
        <context>GTTTTCCCCT[A/T]TTTCAAAGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTGGTCCCGATCTCCTGTCCTGAAATTTTGAAAAATACGGTTTTCCCCT</left_flank>
        <right_flank>TTTCAAAGCAAAGAAATTATACCTGCTAACACTTTGTAAACATCGTTTTT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAAATAATAACAAATTTGTTTCAAAATAATAATTAAAAAAACAGAAATCATCGAGATTTTTTAGATGTGAAAGTCTTCAACTCTTCCACACATTTCTCCAACATTTTAATTCCTTCTGTTTTTCGAACCACTTGATCATTCAACCAGCTTTGTAGGGTAACTCTGGTTGACAGAAAGTGCTCCAGTGGATTTTCACGAAGATTACAGAAAAATTGGTCTCTAGCATAAGCGTAGTAGTTTTTCTCATCGAAGAAGATAGCTGCGACTCTGAAAGGAATCATCGTCAAGAATCAAAACAAAATTCAATTTTTCTTACGACGCGAAATCTGGATCATCATCCTTGACCGTCTTCACCATGGTAACTTTGGCCTGTGGATCCACGTTTACGGTTTTAATTCTTTCGATGAGAGCAGCTGAACAATCATTCAGAACTGCAGCAAAACAGTGATTGGTCCCGATCTCCTGTCCTGAAATTTTGAAAAATACGGTTTTCCCCTTTTTCAAAGCAAAGAAATTATACCTGCTAACACTTTGTAAACATCGTTTTTTCCCTTGATTGTGATGATTTCTAGATAGACATTTTTTGTTTTTTCTCCAATTCTTGGATATCTACTAGCGATTCTGTCGGTCAACTCGTGAACCATACGGCGAGCTTCATTGATTGAATGAGTTGATAATTTCAGAATAGATGACATGTGTCCAGAGGAATAGCTGAATTTTGAAAACAAATTTTGAACGAACTCCTTTAATCTGTTTAGGATCAATTTATATCTCCTGTTTTTTATCCAGTATTCTTACTCAAACAAGCAATTCACCGCCATTCAAATTATCATTTGTTTTAAGCACTAAAAGCGCGATTTTTGCACTAAAAGCGGGATTTTTGAATCCGAAACTCATATATGTAACTCGGAAACTGGGGAGCGGATTCTAAAATTCTCAGTAGTGTCTGGAGAGGCTATTCTTAACCTATCCTGAAATTTATATCAAAATCTGGGTTT</canonical>
            <polymorphic>ACCAAATAATAACAAATTTGTTTCAAAATAATAATTAAAAAAACAGAAATCATCGAGATTTTTTAGATGTGAAAGTCTTCAACTCTTCCACACATTTCTCCAACATTTTAATTCCTTCTGTTTTTCGAACCACTTGATCATTCAACCAGCTTTGTAGGGTAACTCTGGTTGACAGAAAGTGCTCCAGTGGATTTTCACGAAGATTACAGAAAAATTGGTCTCTAGCATAAGCGTAGTAGTTTTTCTCATCGAAGAAGATAGCTGCGACTCTGAAAGGAATCATCGTCAAGAATCAAAACAAAATTCAATTTTTCTTACGACGCGAAATCTGGATCATCATCCTTGACCGTCTTCACCATGGTAACTTTGGCCTGTGGATCCACGTTTACGGTTTTAATTCTTTCGATGAGAGCAGCTGAACAATCATTCAGAACTGCAGCAAAACAGTGATTGGTCCCGATCTCCTGTCCTGAAATTTTGAAAAATACGGTTTTCCCCTWTTTCAAAGCAAAGAAATTATACCTGCTAACACTTTGTAAACATCGTTTTTTCCCTTGATTGTGATGATTTCTAGATAGACATTTTTTGTTTTTTCTCCAATTCTTGGATATCTACTAGCGATTCTGTCGGTCAACTCGTGAACCATACGGCGAGCTTCATTGATTGAATGAGTTGATAATTTCAGAATAGATGACATGTGTCCAGAGGAATAGCTGAATTTTGAAAACAAATTTTGAACGAACTCCTTTAATCTGTTTAGGATCAATTTATATCTCCTGTTTTTTATCCAGTATTCTTACTCAAACAAGCAATTCACCGCCATTCAAATTATCATTTGTTTTAAGCACTAAAAGCGCGATTTTTGCACTAAAAGCGGGATTTTTGAATCCGAAACTCATATATGTAACTCGGAAACTGGGGAGCGGATTCTAAAATTCTCAGTAGTGTCTGGAGAGGCTATTCTTAACCTATCCTGAAATTTATATCAAAATCTGGGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGTTTACGGTTTTAATTCTTTC</pcr_primer_p1>
		<pcr_primer_p2>AATCGCTAGTAGATATCCAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ACGTTTACGGTTTTAATTCTTTCGATGAGAGCAGCTGAACAATCATTCAGAACTGCAGCAAAACAGTGATTGGTCCCGATCTCCTGTCCTGAAATTTTGAAAAATACGGTTTTCCCCTTTTTCAAAGCAAAGAAATTATACCTGCTAACACTTTGTAAACATCGTTTTTTCCCTTGATTGTGATGATTTCTAGATAGACATTTTTTGTTTTTTCTCCAATTCTTGGATATCTACTAGCGATT</canonical_amplicon>
		<polymorphic_amplicon>ACGTTTACGGTTTTAATTCTTTCGATGAGAGCAGCTGAACAATCATTCAGAACTGCAGCAAAACAGTGATTGGTCCCGATCTCCTGTCCTGAAATTTTGAAAAATACGGTTTTCCCCTWTTTCAAAGCAAAGAAATTATACCTGCTAACACTTTGTAAACATCGTTTTTTCCCTTGATTGTGATGATTTCTAGATAGACATTTTTTGTTTTTTCTCCAATTCTTGGATATCTACTAGCGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30680</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>405624</contig_pos>
        <strand>+</strand>
        <context>TTTCAAAGCA[A/G]AGAAATTATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTCCTGTCCTGAAATTTTGAAAAATACGGTTTTCCCCTTTTTCAAAGCA</left_flank>
        <right_flank>AGAAATTATACCTGCTAACACTTTGTAAACATCGTTTTTTCCCTTGATTG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAATTTGTTTCAAAATAATAATTAAAAAAACAGAAATCATCGAGATTTTTTAGATGTGAAAGTCTTCAACTCTTCCACACATTTCTCCAACATTTTAATTCCTTCTGTTTTTCGAACCACTTGATCATTCAACCAGCTTTGTAGGGTAACTCTGGTTGACAGAAAGTGCTCCAGTGGATTTTCACGAAGATTACAGAAAAATTGGTCTCTAGCATAAGCGTAGTAGTTTTTCTCATCGAAGAAGATAGCTGCGACTCTGAAAGGAATCATCGTCAAGAATCAAAACAAAATTCAATTTTTCTTACGACGCGAAATCTGGATCATCATCCTTGACCGTCTTCACCATGGTAACTTTGGCCTGTGGATCCACGTTTACGGTTTTAATTCTTTCGATGAGAGCAGCTGAACAATCATTCAGAACTGCAGCAAAACAGTGATTGGTCCCGATCTCCTGTCCTGAAATTTTGAAAAATACGGTTTTCCCCTTTTTCAAAGCAAAGAAATTATACCTGCTAACACTTTGTAAACATCGTTTTTTCCCTTGATTGTGATGATTTCTAGATAGACATTTTTTGTTTTTTCTCCAATTCTTGGATATCTACTAGCGATTCTGTCGGTCAACTCGTGAACCATACGGCGAGCTTCATTGATTGAATGAGTTGATAATTTCAGAATAGATGACATGTGTCCAGAGGAATAGCTGAATTTTGAAAACAAATTTTGAACGAACTCCTTTAATCTGTTTAGGATCAATTTATATCTCCTGTTTTTTATCCAGTATTCTTACTCAAACAAGCAATTCACCGCCATTCAAATTATCATTTGTTTTAAGCACTAAAAGCGCGATTTTTGCACTAAAAGCGGGATTTTTGAATCCGAAACTCATATATGTAACTCGGAAACTGGGGAGCGGATTCTAAAATTCTCAGTAGTGTCTGGAGAGGCTATTCTTAACCTATCCTGAAATTTATATCAAAATCTGGGTTTTCAGTGTGTAG</canonical>
            <polymorphic>ACAAATTTGTTTCAAAATAATAATTAAAAAAACAGAAATCATCGAGATTTTTTAGATGTGAAAGTCTTCAACTCTTCCACACATTTCTCCAACATTTTAATTCCTTCTGTTTTTCGAACCACTTGATCATTCAACCAGCTTTGTAGGGTAACTCTGGTTGACAGAAAGTGCTCCAGTGGATTTTCACGAAGATTACAGAAAAATTGGTCTCTAGCATAAGCGTAGTAGTTTTTCTCATCGAAGAAGATAGCTGCGACTCTGAAAGGAATCATCGTCAAGAATCAAAACAAAATTCAATTTTTCTTACGACGCGAAATCTGGATCATCATCCTTGACCGTCTTCACCATGGTAACTTTGGCCTGTGGATCCACGTTTACGGTTTTAATTCTTTCGATGAGAGCAGCTGAACAATCATTCAGAACTGCAGCAAAACAGTGATTGGTCCCGATCTCCTGTCCTGAAATTTTGAAAAATACGGTTTTCCCCTTTTTCAAAGCARAGAAATTATACCTGCTAACACTTTGTAAACATCGTTTTTTCCCTTGATTGTGATGATTTCTAGATAGACATTTTTTGTTTTTTCTCCAATTCTTGGATATCTACTAGCGATTCTGTCGGTCAACTCGTGAACCATACGGCGAGCTTCATTGATTGAATGAGTTGATAATTTCAGAATAGATGACATGTGTCCAGAGGAATAGCTGAATTTTGAAAACAAATTTTGAACGAACTCCTTTAATCTGTTTAGGATCAATTTATATCTCCTGTTTTTTATCCAGTATTCTTACTCAAACAAGCAATTCACCGCCATTCAAATTATCATTTGTTTTAAGCACTAAAAGCGCGATTTTTGCACTAAAAGCGGGATTTTTGAATCCGAAACTCATATATGTAACTCGGAAACTGGGGAGCGGATTCTAAAATTCTCAGTAGTGTCTGGAGAGGCTATTCTTAACCTATCCTGAAATTTATATCAAAATCTGGGTTTTCAGTGTGTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGTTTACGGTTTTAATTCTTTC</pcr_primer_p1>
		<pcr_primer_p2>AATCGCTAGTAGATATCCAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ACGTTTACGGTTTTAATTCTTTCGATGAGAGCAGCTGAACAATCATTCAGAACTGCAGCAAAACAGTGATTGGTCCCGATCTCCTGTCCTGAAATTTTGAAAAATACGGTTTTCCCCTTTTTCAAAGCAAAGAAATTATACCTGCTAACACTTTGTAAACATCGTTTTTTCCCTTGATTGTGATGATTTCTAGATAGACATTTTTTGTTTTTTCTCCAATTCTTGGATATCTACTAGCGATT</canonical_amplicon>
		<polymorphic_amplicon>ACGTTTACGGTTTTAATTCTTTCGATGAGAGCAGCTGAACAATCATTCAGAACTGCAGCAAAACAGTGATTGGTCCCGATCTCCTGTCCTGAAATTTTGAAAAATACGGTTTTCCCCTTTTTCAAAGCARAGAAATTATACCTGCTAACACTTTGTAAACATCGTTTTTTCCCTTGATTGTGATGATTTCTAGATAGACATTTTTTGTTTTTTCTCCAATTCTTGGATATCTACTAGCGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30681</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>413174</contig_pos>
        <strand></strand>
        <context>ttttttttaa[T/A]gttcaaaaty</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTCATTTCGAAAAATGTTATTTTTTACAATTTTTCGGAGTTTTTTTTAA</left_flank>
        <right_flank>GTTCAAAATCAATGAAACGCATCGAAAAAATTGAAAAAAAAATGGCCAGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGACGTTTTCTATAGCTGGTTTATTGACACATTAGCTCAGTATTATTGATTTCATTGCTGATCTCTATCTATTAGAAGAATATGATCTGTTCGTTTTACTTCTTCCCGTAGTTTGAACAGTCATATGGTTGAGAAAGAATCCGAGATCTTCGAGTGGTGAAACAATGATGAGACAGATGGTTTTTTTGTGCAATAAGTGGACATTTGGTGTCTCGACTTTTGAATGATTCGATTAGGTCTCAATATTTTTTCTATTCTGAAAGAGTGAAATCATAAATCTCTAGTTAATATAATTCCAGATAAAATTATAAATTAGTTGGTTTGAGAGACAAAAAAGGAAATTTCTGACGTGAGTTTCGACCAAACGTCATACTCAGATAATTAGATAAGGTCACAGTAAAAACAAAACATGTTGCGAAATCTTCAGCTTATTTTCTCGAGTTGTTCTTTCATTTCGAAAAATGTTATTTTTTACAATTTTTCGGAGTTTTTTTTAATGTTCAAAATCAATGAAACGCATCGAAAAAATTGAAAAAAAAATGGCCAGAAAACATTTACGAATATACATGCTCCTTTAAGGATTTTCTATCGGACCTAAGCTCCGCCCACTCACGAATTTTCGTTCGCAACATTGAAATTGGACCAGAGTAATACAGAAATTTAAAAAAAAATTGAATTATTAATATGGAATGACCAGATGCTTATGATACCGAAAGTGGACCATCCAAAACAAAAAGCCCATTGAATTTGAATTTTTTCTACCAATACTGAGAAAGAAGGTTTTTCCCAACAAAAAAATTCTAACGACATCCGATCAAATGTTCTTCCCTCAAAAAACAAGAAGTTTGGCTCATCGAATGTACATAAATGAAATAAAAACAAAGAGAGCTTCTTGTTCTTCTTCTTATTTTCTTACCCAAAATTGCGTGTCGTCAGTCCATCTTGGCTTCCTCTTTTCTTTCTCCTCGTATAAATTCGGTGGCCAAGTGTCACCACTA</canonical>
            <polymorphic>GAGGACGTTTTCTATAGCTGGTTTATTGACACATTAGCTCAGTATTATTGATTTCATTGCTGATCTCTATCTATTAGAAGAATATGATCTGTTCGTTTTACTTCTTCCCGTAGTTTGAACAGTCATATGGTTGAGAAAGAATCCGAGATCTTCGAGTGGTGAAACAATGATGAGACAGATGGTTTTTTTGTGCAATAAGTGGACATTTGGTGTCTCGACTTTTGAATGATTCGATTAGGTCTCAATATTTTTTCTATTCTGAAAGAGTGAAATCATAAATCTCTAGTTAATATAATTCCAGATAAAATTATAAATTAGTTGGTTTGAGAGACAAAAAAGGAAATTTCTGACGTGAGTTTCGACCAAACGTCATACTCAGATAATTAGATAAGGTCACAGTAAAAACAAAACATGTTGCGAAATCTTCAGCTTATTTTCTCGAGTTGTTCTTTCATTTCGAAAAATGTTATTTTTTACAATTTTTCGGAGTTTTTTTTAAWGTTCAAAATCAATGAAACGCATCGAAAAAATTGAAAAAAAAATGGCCAGAAAACATTTACGAATATACATGCTCCTTTAAGGATTTTCTATCGGACCTAAGCTCCGCCCACTCACGAATTTTCGTTCGCAACATTGAAATTGGACCAGAGTAATACAGAAATTTAAAAAAAAATTGAATTATTAATATGGAATGACCAGATGCTTATGATACCGAAAGTGGACCATCCAAAACAAAAAGCCCATTGAATTTGAATTTTTTCTACCAATACTGAGAAAGAAGGTTTTTCCCAACAAAAAAATTCTAACGACATCCGATCAAATGTTCTTCCCTCAAAAAACAAGAAGTTTGGCTCATCGAATGTACATAAATGAAATAAAAACAAAGAGAGCTTCTTGTTCTTCTTCTTATTTTCTTACCCAAAATTGCGTGTCGTCAGTCCATCTTGGCTTCCTCTTTTCTTTCTCCTCGTATAAATTCGGTGGCCAAGTGTCACCACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCGAGTTGTTCTTTCATTTC</pcr_primer_p1>
		<pcr_primer_p2>GTATCATAAGCATCTGGTCATTC</pcr_primer_p2>
		<pcr_amplicon_size>276</pcr_amplicon_size>
		<canonical_amplicon>TCTCGAGTTGTTCTTTCATTTCGAAAAATGTTATTTTTTACAATTTTTCGGAGTTTTTTTTAATGTTCAAAATCAATGAAACGCATCGAAAAAATTGAAAAAAAAATGGCCAGAAAACATTTACGAATATACATGCTCCTTTAAGGATTTTCTATCGGACCTAAGCTCCGCCCACTCACGAATTTTCGTTCGCAACATTGAAATTGGACCAGAGTAATACAGAAATTTAAAAAAAAATTGAATTATTAATATGGAATGACCAGATGCTTATGATAC</canonical_amplicon>
		<polymorphic_amplicon>TCTCGAGTTGTTCTTTCATTTCGAAAAATGTTATTTTTTACAATTTTTCGGAGTTTTTTTTAAWGTTCAAAATCAATGAAACGCATCGAAAAAATTGAAAAAAAAATGGCCAGAAAACATTTACGAATATACATGCTCCTTTAAGGATTTTCTATCGGACCTAAGCTCCGCCCACTCACGAATTTTCGTTCGCAACATTGAAATTGGACCAGAGTAATACAGAAATTTAAAAAAAAATTGAATTATTAATATGGAATGACCAGATGCTTATGATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30682</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>413184</contig_pos>
        <strand></strand>
        <context>wgttcaaaat[C/T]aatgaaacgc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATGTTATTTTTTACAATTTTTCGGAGTTTTTTTTAATGTTCAAAAT</left_flank>
        <right_flank>AATGAAACGCATCGAAAAAATTGAAAAAAAAATGGCCAGAAAACATTTAC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTATAGCTGGTTTATTGACACATTAGCTCAGTATTATTGATTTCATTGCTGATCTCTATCTATTAGAAGAATATGATCTGTTCGTTTTACTTCTTCCCGTAGTTTGAACAGTCATATGGTTGAGAAAGAATCCGAGATCTTCGAGTGGTGAAACAATGATGAGACAGATGGTTTTTTTGTGCAATAAGTGGACATTTGGTGTCTCGACTTTTGAATGATTCGATTAGGTCTCAATATTTTTTCTATTCTGAAAGAGTGAAATCATAAATCTCTAGTTAATATAATTCCAGATAAAATTATAAATTAGTTGGTTTGAGAGACAAAAAAGGAAATTTCTGACGTGAGTTTCGACCAAACGTCATACTCAGATAATTAGATAAGGTCACAGTAAAAACAAAACATGTTGCGAAATCTTCAGCTTATTTTCTCGAGTTGTTCTTTCATTTCGAAAAATGTTATTTTTTACAATTTTTCGGAGTTTTTTTTAATGTTCAAAATCAATGAAACGCATCGAAAAAATTGAAAAAAAAATGGCCAGAAAACATTTACGAATATACATGCTCCTTTAAGGATTTTCTATCGGACCTAAGCTCCGCCCACTCACGAATTTTCGTTCGCAACATTGAAATTGGACCAGAGTAATACAGAAATTTAAAAAAAAATTGAATTATTAATATGGAATGACCAGATGCTTATGATACCGAAAGTGGACCATCCAAAACAAAAAGCCCATTGAATTTGAATTTTTTCTACCAATACTGAGAAAGAAGGTTTTTCCCAACAAAAAAATTCTAACGACATCCGATCAAATGTTCTTCCCTCAAAAAACAAGAAGTTTGGCTCATCGAATGTACATAAATGAAATAAAAACAAAGAGAGCTTCTTGTTCTTCTTCTTATTTTCTTACCCAAAATTGCGTGTCGTCAGTCCATCTTGGCTTCCTCTTTTCTTTCTCCTCGTATAAATTCGGTGGCCAAGTGTCACCACTACCACCACCAC</canonical>
            <polymorphic>TCTATAGCTGGTTTATTGACACATTAGCTCAGTATTATTGATTTCATTGCTGATCTCTATCTATTAGAAGAATATGATCTGTTCGTTTTACTTCTTCCCGTAGTTTGAACAGTCATATGGTTGAGAAAGAATCCGAGATCTTCGAGTGGTGAAACAATGATGAGACAGATGGTTTTTTTGTGCAATAAGTGGACATTTGGTGTCTCGACTTTTGAATGATTCGATTAGGTCTCAATATTTTTTCTATTCTGAAAGAGTGAAATCATAAATCTCTAGTTAATATAATTCCAGATAAAATTATAAATTAGTTGGTTTGAGAGACAAAAAAGGAAATTTCTGACGTGAGTTTCGACCAAACGTCATACTCAGATAATTAGATAAGGTCACAGTAAAAACAAAACATGTTGCGAAATCTTCAGCTTATTTTCTCGAGTTGTTCTTTCATTTCGAAAAATGTTATTTTTTACAATTTTTCGGAGTTTTTTTTAATGTTCAAAATYAATGAAACGCATCGAAAAAATTGAAAAAAAAATGGCCAGAAAACATTTACGAATATACATGCTCCTTTAAGGATTTTCTATCGGACCTAAGCTCCGCCCACTCACGAATTTTCGTTCGCAACATTGAAATTGGACCAGAGTAATACAGAAATTTAAAAAAAAATTGAATTATTAATATGGAATGACCAGATGCTTATGATACCGAAAGTGGACCATCCAAAACAAAAAGCCCATTGAATTTGAATTTTTTCTACCAATACTGAGAAAGAAGGTTTTTCCCAACAAAAAAATTCTAACGACATCCGATCAAATGTTCTTCCCTCAAAAAACAAGAAGTTTGGCTCATCGAATGTACATAAATGAAATAAAAACAAAGAGAGCTTCTTGTTCTTCTTCTTATTTTCTTACCCAAAATTGCGTGTCGTCAGTCCATCTTGGCTTCCTCTTTTCTTTCTCCTCGTATAAATTCGGTGGCCAAGTGTCACCACTACCACCACCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCGAGTTGTTCTTTCATTTC</pcr_primer_p1>
		<pcr_primer_p2>GTATCATAAGCATCTGGTCATTC</pcr_primer_p2>
		<pcr_amplicon_size>276</pcr_amplicon_size>
		<canonical_amplicon>TCTCGAGTTGTTCTTTCATTTCGAAAAATGTTATTTTTTACAATTTTTCGGAGTTTTTTTTAATGTTCAAAATCAATGAAACGCATCGAAAAAATTGAAAAAAAAATGGCCAGAAAACATTTACGAATATACATGCTCCTTTAAGGATTTTCTATCGGACCTAAGCTCCGCCCACTCACGAATTTTCGTTCGCAACATTGAAATTGGACCAGAGTAATACAGAAATTTAAAAAAAAATTGAATTATTAATATGGAATGACCAGATGCTTATGATAC</canonical_amplicon>
		<polymorphic_amplicon>TCTCGAGTTGTTCTTTCATTTCGAAAAATGTTATTTTTTACAATTTTTCGGAGTTTTTTTTAATGTTCAAAATYAATGAAACGCATCGAAAAAATTGAAAAAAAAATGGCCAGAAAACATTTACGAATATACATGCTCCTTTAAGGATTTTCTATCGGACCTAAGCTCCGCCCACTCACGAATTTTCGTTCGCAACATTGAAATTGGACCAGAGTAATACAGAAATTTAAAAAAAAATTGAATTATTAATATGGAATGACCAGATGCTTATGATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30683</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>414209</contig_pos>
        <strand></strand>
        <context>TGATTCATAA[G/C]TGGTCAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TCAAATAGAACGAACAAAAATTGGTGGAATAGTTTAGAAGTGATTCATAA</left_flank>
        <right_flank>TGGTCAAAATCTTTTTTTCACATCTCTCAAATTTCTCTTTATTTTCTCTT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTTTATTTCTCTAATTCTCTCTCGTGTTCCCACTTCTATTCCACCACTTTCCACCACAATCTCTCGCCCGGATCCCCTCTCCCGCCAACAACCATTCCACCCCACAACACCCCATTTCTTTCCATCTGTCCTTTTTCTCTCCTTTCTGCTATTCTTCTTCACTTACAATTCTTTCTATCTCTTTTGTGTGAGAAAAACAGGAATTCCCAACGGGGAGCTCCCATAGAAAGACCCGCCATTCCCTGGACATTCAAAATATGCTCAAAAATTTCCGGAGTGGAAACTTTTTTGCCTTTTTTCCATTACTTCTTTCTATTACACACAAGAGTTTTCACTTTTTGTTAGCCCCAACAATTCTTTGTACAATTCTACCAAAGTCACTTACATGACACATTCTAATAGATTACCATCCAAAGCGTGTGTAAAGTTTACAGTACCCCCAAAATTTCAAATAGAACGAACAAAAATTGGTGGAATAGTTTAGAAGTGATTCATAAGTGGTCAAAATCTTTTTTTCACATCTCTCAAATTTCTCTTTATTTTCTCTTCTGATGTGTGAAATGACGTGACGGTGTTCACACTTTTCAATACCCTTTGATTTACGACTTCTAACTTATGCCGCATAACTTTTTTTTTATTGAGCTGTTAAAAATATTTTAACTTTTAGCAAAATGGCAGAGTCTCCACCTCGGGTGGACTCGTCAGCTCCAGACGTCGGGGATCCGACGTCAATGATGGAGAGACTTCGTTTAGGGGATGACGGAGGAAAGGATGATGGTATGTGTTGAAAGTTATGAAATTGAAAAAAAAAATTAAAAAATTAAGAATTTGACAATAAGTCAGTTTCTTCTGCTCAATACTCTCAAGCATCAGAGGCAACGACAGCTGTCAAACAACAACCGTTTTTGCATACGATGACCAAAGTGAGTCTTTTAAAATTTGCATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAATGAACCTGGTTTTC</canonical>
            <polymorphic>TTGTTTATTTCTCTAATTCTCTCTCGTGTTCCCACTTCTATTCCACCACTTTCCACCACAATCTCTCGCCCGGATCCCCTCTCCCGCCAACAACCATTCCACCCCACAACACCCCATTTCTTTCCATCTGTCCTTTTTCTCTCCTTTCTGCTATTCTTCTTCACTTACAATTCTTTCTATCTCTTTTGTGTGAGAAAAACAGGAATTCCCAACGGGGAGCTCCCATAGAAAGACCCGCCATTCCCTGGACATTCAAAATATGCTCAAAAATTTCCGGAGTGGAAACTTTTTTGCCTTTTTTCCATTACTTCTTTCTATTACACACAAGAGTTTTCACTTTTTGTTAGCCCCAACAATTCTTTGTACAATTCTACCAAAGTCACTTACATGACACATTCTAATAGATTACCATCCAAAGCGTGTGTAAAGTTTACAGTACCCCCAAAATTTCAAATAGAACGAACAAAAATTGGTGGAATAGTTTAGAAGTGATTCATAASTGGTCAAAATCTTTTTTTCACATCTCTCAAATTTCTCTTTATTTTCTCTTCTGATGTGTGAAATGACGTGACGGTGTTCACACTTTTCAATACCCTTTGATTTACGACTTCTAACTTATGCCGCATAACTTTTTTTTTATTGAGCTGTTAAAAATATTTTAACTTTTAGCAAAATGGCAGAGTCTCCACCTCGGGTGGACTCGTCAGCTCCAGACGTCGGGGATCCGACGTCAATGATGGAGAGACTTCGTTTAGGGGATGACGGAGGAAAGGATGATGGTATGTGTTGAAAGTTATGAAATTGAAAAAAAAAATTAAAAAATTAAGAATTTGACAATAAGTCAGTTTCTTCTGCTCAATACTCTCAAGCATCAGAGGCAACGACAGCTGTCAAACAACAACCGTTTTTGCATACGATGACCAAAGTGAGTCTTTTAAAATTTGCATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAATGAACCTGGTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>142 106 89 89 72 52 51 46 43 41 38 29 28 27 18 16 12 11 11 11 10 9 7 6 6 5 5 4 3 3 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>142 106 89 89 72 52 51 46 43 41 38 29 29 28 27 16 12 11 11 10 9 7 6 6 5 5 4 3 3 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAATTCTACCAAAGTCACTTACA</pcr_primer_p1>
		<pcr_primer_p2>AGAAGTCGTAAATCAAAGGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACAATTCTACCAAAGTCACTTACATGACACATTCTAATAGATTACCATCCAAAGCGTGTGTAAAGTTTACAGTACCCCCAAAATTTCAAATAGAACGAACAAAAATTGGTGGAATAGTTTAGAAGTGATTCATAAGTGGTCAAAATCTTTTTTTCACATCTCTCAAATTTCTCTTTATTTTCTCTTCTGATGTGTGAAATGACGTGACGGTGTTCACACTTTTCAATACCCTTTGATTTACGACTTCT</canonical_amplicon>
		<polymorphic_amplicon>ACAATTCTACCAAAGTCACTTACATGACACATTCTAATAGATTACCATCCAAAGCGTGTGTAAAGTTTACAGTACCCCCAAAATTTCAAATAGAACGAACAAAAATTGGTGGAATAGTTTAGAAGTGATTCATAASTGGTCAAAATCTTTTTTTCACATCTCTCAAATTTCTCTTTATTTTCTCTTCTGATGTGTGAAATGACGTGACGGTGTTCACACTTTTCAATACCCTTTGATTTACGACTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30684</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>414789</contig_pos>
        <strand></strand>
        <context>actcgatgag[C/A]actacataat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AAACCAAAATCTTTGGACCAACTAAATCAGATATCATATAACTCGATGAG</left_flank>
        <right_flank>ACTACATAATGCTACTGTTTGAAAAATAATTGCTTGTCTATGAGCAAAGT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACTTTTCAATACCCTTTGATTTACGACTTCTAACTTATGCCGCATAACTTTTTTTTTATTGAGCTGTTAAAAATATTTTAACTTTTAGCAAAATGGCAGAGTCTCCACCTCGGGTGGACTCGTCAGCTCCAGACGTCGGGGATCCGACGTCAATGATGGAGAGACTTCGTTTAGGGGATGACGGAGGAAAGGATGATGGTATGTGTTGAAAGTTATGAAATTGAAAAAAAAAATTAAAAAATTAAGAATTTGACAATAAGTCAGTTTCTTCTGCTCAATACTCTCAAGCATCAGAGGCAACGACAGCTGTCAAACAACAACCGTTTTTGCATACGATGACCAAAGTGAGTCTTTTAAAATTTGCATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAATGAACCTGGTTTTCACACTTGTGAACCGCCGTAGTTTCTTTTAAAACCAAAATCTTTGGACCAACTAAATCAGATATCATATAACTCGATGAGCACTACATAATGCTACTGTTTGAAAAATAATTGCTTGTCTATGAGCAAAGTTACAGACGAAACAAAAAACTGACAGATTCCGACCCGGGCCAGCCACTTTAGGGCTTATAACATTGATCATTGACATTGACAAAGTACAGTTTCTCAAATAATACCATTTTGTAGTTAAGCTGTATAGTGGCTGATGTAGTTGATCCAAAAATATTTTGTTCTTGAAGAAAATATGATAGGGCTATACTTTAAAATTTCAGGTATACTGTCACATTGACGACGAAACAGATCCCTACATGCTCGAAGTGCACGTACCACCGGATCTTATCACTTTGGGAGATTTGAAACGAGTATTAATGAGAACAAACTTTAAATACTACAGAAAAGCATTGGATCCGGACTCTGGATAGTGAGTTTTCGACTTGAAACAACAAAGAATCTAAAAAAAATTCAGTGAAGTGAAAGCTGAAATTCGAGATGATTCTCAACGACTAACGCCTTCTTCGAATA</canonical>
            <polymorphic>CACTTTTCAATACCCTTTGATTTACGACTTCTAACTTATGCCGCATAACTTTTTTTTTATTGAGCTGTTAAAAATATTTTAACTTTTAGCAAAATGGCAGAGTCTCCACCTCGGGTGGACTCGTCAGCTCCAGACGTCGGGGATCCGACGTCAATGATGGAGAGACTTCGTTTAGGGGATGACGGAGGAAAGGATGATGGTATGTGTTGAAAGTTATGAAATTGAAAAAAAAAATTAAAAAATTAAGAATTTGACAATAAGTCAGTTTCTTCTGCTCAATACTCTCAAGCATCAGAGGCAACGACAGCTGTCAAACAACAACCGTTTTTGCATACGATGACCAAAGTGAGTCTTTTAAAATTTGCATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAATGAACCTGGTTTTCACACTTGTGAACCGCCGTAGTTTCTTTTAAAACCAAAATCTTTGGACCAACTAAATCAGATATCATATAACTCGATGAGMACTACATAATGCTACTGTTTGAAAAATAATTGCTTGTCTATGAGCAAAGTTACAGACGAAACAAAAAACTGACAGATTCCGACCCGGGCCAGCCACTTTAGGGCTTATAACATTGATCATTGACATTGACAAAGTACAGTTTCTCAAATAATACCATTTTGTAGTTAAGCTGTATAGTGGCTGATGTAGTTGATCCAAAAATATTTTGTTCTTGAAGAAAATATGATAGGGCTATACTTTAAAATTTCAGGTATACTGTCACATTGACGACGAAACAGATCCCTACATGCTCGAAGTGCACGTACCACCGGATCTTATCACTTTGGGAGATTTGAAACGAGTATTAATGAGAACAAACTTTAAATACTACAGAAAAGCATTGGATCCGGACTCTGGATAGTGAGTTTTCGACTTGAAACAACAAAGAATCTAAAAAAAATTCAGTGAAGTGAAAGCTGAAATTCGAGATGATTCTCAACGACTAACGCCTTCTTCGAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 299 200</canonical_bands>
                <polymorphic_bands>800 200</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 299 200</canonical_bands>
                <polymorphic_bands>800 200</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>142 106 94 89 84 82 82 73 72 49 44 37 13 9 7 6 5 2 2 2</canonical_bands>
                <polymorphic_bands>166 142 106 89 84 82 82 73 49 44 37 13 9 7 6 5 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCATTTAAATTGGAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GTCAATGTGACAGTATACCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>406</pcr_amplicon_size>
		<canonical_amplicon>TGCATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAATGAACCTGGTTTTCACACTTGTGAACCGCCGTAGTTTCTTTTAAAACCAAAATCTTTGGACCAACTAAATCAGATATCATATAACTCGATGAGCACTACATAATGCTACTGTTTGAAAAATAATTGCTTGTCTATGAGCAAAGTTACAGACGAAACAAAAAACTGACAGATTCCGACCCGGGCCAGCCACTTTAGGGCTTATAACATTGATCATTGACATTGACAAAGTACAGTTTCTCAAATAATACCATTTTGTAGTTAAGCTGTATAGTGGCTGATGTAGTTGATCCAAAAATATTTTGTTCTTGAAGAAAATATGATAGGGCTATACTTTAAAATTTCAGGTATACTGTCACATTGAC</canonical_amplicon>
		<polymorphic_amplicon>TGCATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAATGAACCTGGTTTTCACACTTGTGAACCGCCGTAGTTTCTTTTAAAACCAAAATCTTTGGACCAACTAAATCAGATATCATATAACTCGATGAGMACTACATAATGCTACTGTTTGAAAAATAATTGCTTGTCTATGAGCAAAGTTACAGACGAAACAAAAAACTGACAGATTCCGACCCGGGCCAGCCACTTTAGGGCTTATAACATTGATCATTGACATTGACAAAGTACAGTTTCTCAAATAATACCATTTTGTAGTTAAGCTGTATAGTGGCTGATGTAGTTGATCCAAAAATATTTTGTTCTTGAAGAAAATATGATAGGGCTATACTTTAAAATTTCAGGTATACTGTCACATTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30685</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>414800</contig_pos>
        <strand></strand>
        <context>actacataat[G/T]ctactgtttg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTGGACCAACTAAATCAGATATCATATAACTCGATGAGCACTACATAAT</left_flank>
        <right_flank>CTACTGTTTGAAAAATAATTGCTTGTCTATGAGCAAAGTTACAGACGAAA</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCCTTTGATTTACGACTTCTAACTTATGCCGCATAACTTTTTTTTTATTGAGCTGTTAAAAATATTTTAACTTTTAGCAAAATGGCAGAGTCTCCACCTCGGGTGGACTCGTCAGCTCCAGACGTCGGGGATCCGACGTCAATGATGGAGAGACTTCGTTTAGGGGATGACGGAGGAAAGGATGATGGTATGTGTTGAAAGTTATGAAATTGAAAAAAAAAATTAAAAAATTAAGAATTTGACAATAAGTCAGTTTCTTCTGCTCAATACTCTCAAGCATCAGAGGCAACGACAGCTGTCAAACAACAACCGTTTTTGCATACGATGACCAAAGTGAGTCTTTTAAAATTTGCATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAATGAACCTGGTTTTCACACTTGTGAACCGCCGTAGTTTCTTTTAAAACCAAAATCTTTGGACCAACTAAATCAGATATCATATAACTCGATGAGCACTACATAATGCTACTGTTTGAAAAATAATTGCTTGTCTATGAGCAAAGTTACAGACGAAACAAAAAACTGACAGATTCCGACCCGGGCCAGCCACTTTAGGGCTTATAACATTGATCATTGACATTGACAAAGTACAGTTTCTCAAATAATACCATTTTGTAGTTAAGCTGTATAGTGGCTGATGTAGTTGATCCAAAAATATTTTGTTCTTGAAGAAAATATGATAGGGCTATACTTTAAAATTTCAGGTATACTGTCACATTGACGACGAAACAGATCCCTACATGCTCGAAGTGCACGTACCACCGGATCTTATCACTTTGGGAGATTTGAAACGAGTATTAATGAGAACAAACTTTAAATACTACAGAAAAGCATTGGATCCGGACTCTGGATAGTGAGTTTTCGACTTGAAACAACAAAGAATCTAAAAAAAATTCAGTGAAGTGAAAGCTGAAATTCGAGATGATTCTCAACGACTAACGCCTTCTTCGAATAATCTGTTTGAA</canonical>
            <polymorphic>ACCCTTTGATTTACGACTTCTAACTTATGCCGCATAACTTTTTTTTTATTGAGCTGTTAAAAATATTTTAACTTTTAGCAAAATGGCAGAGTCTCCACCTCGGGTGGACTCGTCAGCTCCAGACGTCGGGGATCCGACGTCAATGATGGAGAGACTTCGTTTAGGGGATGACGGAGGAAAGGATGATGGTATGTGTTGAAAGTTATGAAATTGAAAAAAAAAATTAAAAAATTAAGAATTTGACAATAAGTCAGTTTCTTCTGCTCAATACTCTCAAGCATCAGAGGCAACGACAGCTGTCAAACAACAACCGTTTTTGCATACGATGACCAAAGTGAGTCTTTTAAAATTTGCATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAATGAACCTGGTTTTCACACTTGTGAACCGCCGTAGTTTCTTTTAAAACCAAAATCTTTGGACCAACTAAATCAGATATCATATAACTCGATGAGCACTACATAATKCTACTGTTTGAAAAATAATTGCTTGTCTATGAGCAAAGTTACAGACGAAACAAAAAACTGACAGATTCCGACCCGGGCCAGCCACTTTAGGGCTTATAACATTGATCATTGACATTGACAAAGTACAGTTTCTCAAATAATACCATTTTGTAGTTAAGCTGTATAGTGGCTGATGTAGTTGATCCAAAAATATTTTGTTCTTGAAGAAAATATGATAGGGCTATACTTTAAAATTTCAGGTATACTGTCACATTGACGACGAAACAGATCCCTACATGCTCGAAGTGCACGTACCACCGGATCTTATCACTTTGGGAGATTTGAAACGAGTATTAATGAGAACAAACTTTAAATACTACAGAAAAGCATTGGATCCGGACTCTGGATAGTGAGTTTTCGACTTGAAACAACAAAGAATCTAAAAAAAATTCAGTGAAGTGAAAGCTGAAATTCGAGATGATTCTCAACGACTAACGCCTTCTTCGAATAATCTGTTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCATTTAAATTGGAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GTCAATGTGACAGTATACCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>406</pcr_amplicon_size>
		<canonical_amplicon>TGCATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAATGAACCTGGTTTTCACACTTGTGAACCGCCGTAGTTTCTTTTAAAACCAAAATCTTTGGACCAACTAAATCAGATATCATATAACTCGATGAGCACTACATAATGCTACTGTTTGAAAAATAATTGCTTGTCTATGAGCAAAGTTACAGACGAAACAAAAAACTGACAGATTCCGACCCGGGCCAGCCACTTTAGGGCTTATAACATTGATCATTGACATTGACAAAGTACAGTTTCTCAAATAATACCATTTTGTAGTTAAGCTGTATAGTGGCTGATGTAGTTGATCCAAAAATATTTTGTTCTTGAAGAAAATATGATAGGGCTATACTTTAAAATTTCAGGTATACTGTCACATTGAC</canonical_amplicon>
		<polymorphic_amplicon>TGCATTTAAATTGGAGAAAAAAGAAGCTTTGGAACGAGAAAGAATGAACCTGGTTTTCACACTTGTGAACCGCCGTAGTTTCTTTTAAAACCAAAATCTTTGGACCAACTAAATCAGATATCATATAACTCGATGAGCACTACATAATKCTACTGTTTGAAAAATAATTGCTTGTCTATGAGCAAAGTTACAGACGAAACAAAAAACTGACAGATTCCGACCCGGGCCAGCCACTTTAGGGCTTATAACATTGATCATTGACATTGACAAAGTACAGTTTCTCAAATAATACCATTTTGTAGTTAAGCTGTATAGTGGCTGATGTAGTTGATCCAAAAATATTTTGTTCTTGAAGAAAATATGATAGGGCTATACTTTAAAATTTCAGGTATACTGTCACATTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30686</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>501268</contig_pos>
        <strand>+</strand>
        <context>GTAAAAAAAG[A/T]ATAAGATGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGCTGCCAATGACATCTTCTTCTTCGTCTTTGGTTGATCAGTAAAAAAAG</left_flank>
        <right_flank>ATAAGATGAGCAAGTTGAGAAAGAAAAAGAAAAAGGGGAAAAAGTGTTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTCTTAAGAATTCCGAATCACGAGGGTGTACCCATTTTGGAATAGGTTTGTTGATTCCTTTTCAAGACCCAAAGCGACATGTTTTTCAAGAAACTTTGCCCTTTTTGTTGTTCCACTTTTACAGGTCGTCTGGGGAAATAACAAATTTTTGGGAGTAAATCGGAACCAGGTAGAAATTATAAAACTCTGAGGGTTTTTCTGACACCACGATTCTAGTAACTTGAAAAAAAGGGGCATTTCAAAACGCTGGAATAGTGCAGACATCCTCGAAAACTCTTCCAGTAAAGTGAAAATACAAACTAATGTCTTTTTTGGCTTCCCGTGGGAAAACTGAAGTTCAAAAAGGCGAGAAAATCTGTTTTGACCAGTGCTTAAAACTCGAAATAGAAAATGAAAGAGGAGAAAAACGAGTTCATCAGAAACTAATGATTAATCCTGCCTCTAGAATGCTGCCAATGACATCTTCTTCTTCGTCTTTGGTTGATCAGTAAAAAAAGAATAAGATGAGCAAGTTGAGAAAGAAAAAGAAAAAGGGGAAAAAGTGTTCGGAAGAAAGGGGTTAGGTCCGACTCGATTATAATCCGGTCGACGAGACGAAAGTAACAAGGAAAAAACCAAAAACAACTCAGATATTTGGTCGAGGTTTAGGGAAAGGAAAAAATGGAAATGTACATGGAATAGTTCTGGAAATTTATATTCATTAAAAATCCACAGGTTTCAATTTGTCTAGTCAAATTTTCAAGAAAATTTACGAATCTAGACAATTTTCGAATTATTTTCAAAGAAAAAATCTTGTATTTCTGGAACCGTGAATTTCCTCAAATAAATTTGTTTTCTGTGAGAATTTGCATGTTTGGAGTTCTGGGTTGTATGAACCGTAGGTTGGTTGGCCCATAACAGTAGTGCATAAATAATTGTACTTCTCAAAATATTGGTGGAAAAGTTTAAAAAAACGATTTTTCTAGGCCACCTTAGTTGATGGTCCATAAATGGTCTAA</canonical>
            <polymorphic>TATTCTTAAGAATTCCGAATCACGAGGGTGTACCCATTTTGGAATAGGTTTGTTGATTCCTTTTCAAGACCCAAAGCGACATGTTTTTCAAGAAACTTTGCCCTTTTTGTTGTTCCACTTTTACAGGTCGTCTGGGGAAATAACAAATTTTTGGGAGTAAATCGGAACCAGGTAGAAATTATAAAACTCTGAGGGTTTTTCTGACACCACGATTCTAGTAACTTGAAAAAAAGGGGCATTTCAAAACGCTGGAATAGTGCAGACATCCTCGAAAACTCTTCCAGTAAAGTGAAAATACAAACTAATGTCTTTTTTGGCTTCCCGTGGGAAAACTGAAGTTCAAAAAGGCGAGAAAATCTGTTTTGACCAGTGCTTAAAACTCGAAATAGAAAATGAAAGAGGAGAAAAACGAGTTCATCAGAAACTAATGATTAATCCTGCCTCTAGAATGCTGCCAATGACATCTTCTTCTTCGTCTTTGGTTGATCAGTAAAAAAAGWATAAGATGAGCAAGTTGAGAAAGAAAAAGAAAAAGGGGAAAAAGTGTTCGGAAGAAAGGGGTTAGGTCCGACTCGATTATAATCCGGTCGACGAGACGAAAGTAACAAGGAAAAAACCAAAAACAACTCAGATATTTGGTCGAGGTTTAGGGAAAGGAAAAAATGGAAATGTACATGGAATAGTTCTGGAAATTTATATTCATTAAAAATCCACAGGTTTCAATTTGTCTAGTCAAATTTTCAAGAAAATTTACGAATCTAGACAATTTTCGAATTATTTTCAAAGAAAAAATCTTGTATTTCTGGAACCGTGAATTTCCTCAAATAAATTTGTTTTCTGTGAGAATTTGCATGTTTGGAGTTCTGGGTTGTATGAACCGTAGGTTGGTTGGCCCATAACAGTAGTGCATAAATAATTGTACTTCTCAAAATATTGGTGGAAAAGTTTAAAAAAACGATTTTTCTAGGCCACCTTAGTTGATGGTCCATAAATGGTCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTGCTTAAAACTCGAAATAGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCCTTGTTACTTTCGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAGTGCTTAAAACTCGAAATAGAAAATGAAAGAGGAGAAAAACGAGTTCATCAGAAACTAATGATTAATCCTGCCTCTAGAATGCTGCCAATGACATCTTCTTCTTCGTCTTTGGTTGATCAGTAAAAAAAGAATAAGATGAGCAAGTTGAGAAAGAAAAAGAAAAAGGGGAAAAAGTGTTCGGAAGAAAGGGGTTAGGTCCGACTCGATTATAATCCGGTCGACGAGACGAAAGTAACAAGGAAAA</canonical_amplicon>
		<polymorphic_amplicon>CAGTGCTTAAAACTCGAAATAGAAAATGAAAGAGGAGAAAAACGAGTTCATCAGAAACTAATGATTAATCCTGCCTCTAGAATGCTGCCAATGACATCTTCTTCTTCGTCTTTGGTTGATCAGTAAAAAAAGWATAAGATGAGCAAGTTGAGAAAGAAAAAGAAAAAGGGGAAAAAGTGTTCGGAAGAAAGGGGTTAGGTCCGACTCGATTATAATCCGGTCGACGAGACGAAAGTAACAAGGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30687</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>572668</contig_pos>
        <strand>+</strand>
        <context>ATGCGAACAT[C/T]GACAATTCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAATCATACGTTCGAAGTAATCACTCCTCAAATAAAAAAATGCGAACAT</left_flank>
        <right_flank>GACAATTCTGCAGCCTGAATGTGTTCGAACACTACGCTAAAGAGTTCAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCATTTGTTTCTGGTCTTTACGATCCACCAATCGTGAAAGGAATCAATGTTAGAAGAGAAATTCTGAAAACACGCGGTGGTTCTCTCATTAATGACATCTCCGGAAGAATGAGAACAAAATCGACATGTGCAAGAAACCCTCTGAAGTGTGATAGTTACCATGAAAACCTCAAATACTTTGCTTATTCCACAGTAACAAAAACTCTTGAAATGGAAATTAAATTATTTATTGCAGCACGACCACACCGTTTACGCACTTCTGGCGATTCTTGGATTAGAAAGTATCGTTGACGGTCCTGAAAAATATGGAGAATGGCCCGACTATGCGTCAGATATCCTCGTCGAACTCTTTCACAACAGCACTGACCGGTCACCTTATTTTAGAGTCCGTTTTTTCATTTAGATACATTTCCTACCACTGTTTTCAGATACTGTATCAGAAGAATATCAATCATACGTTCGAAGTAATCACTCCTCAAATAAAAAAATGCGAACATCGACAATTCTGCAGCCTGAATGTGTTCGAACACTACGCTAAAGAGTTCAGGCCAGATCGACCGATTCAAGAATTCTGCCAAACACCACCAGGAGAAGACAACCGCATCGCAACATGGATCAACAACAATCTACTCCGACGGACAGAGCCATCATCAGCTAGTTATAACTTCGAAATAAATTTAATTTCCTTGATATTGCTTTTGATCATAACATGAAACTTTTTTTTGAAACAACAATTTATTTCAACAACAATAAGACCAGAGCTTATTCGTGGTCGCTTCCGTTGTCCTCTCCGTCGTTGATGTGGAAGTATCTGACCTCATAGGTGTTCTTGTTGACGGCGACCACACGGAGCCAGTCACGGAGGGAGTTTCTCTTAAGGTACTTCTTGGTAAGGTACTTGAGGTATCTGAAAATGAAAATGTTGTTAAAATTTATAAAAAATCCAAAACTGTACCTCTTGGAGAATGGGATCTCGGAGACGACGGAAACCTTGGATT</canonical>
            <polymorphic>AAGCATTTGTTTCTGGTCTTTACGATCCACCAATCGTGAAAGGAATCAATGTTAGAAGAGAAATTCTGAAAACACGCGGTGGTTCTCTCATTAATGACATCTCCGGAAGAATGAGAACAAAATCGACATGTGCAAGAAACCCTCTGAAGTGTGATAGTTACCATGAAAACCTCAAATACTTTGCTTATTCCACAGTAACAAAAACTCTTGAAATGGAAATTAAATTATTTATTGCAGCACGACCACACCGTTTACGCACTTCTGGCGATTCTTGGATTAGAAAGTATCGTTGACGGTCCTGAAAAATATGGAGAATGGCCCGACTATGCGTCAGATATCCTCGTCGAACTCTTTCACAACAGCACTGACCGGTCACCTTATTTTAGAGTCCGTTTTTTCATTTAGATACATTTCCTACCACTGTTTTCAGATACTGTATCAGAAGAATATCAATCATACGTTCGAAGTAATCACTCCTCAAATAAAAAAATGCGAACATYGACAATTCTGCAGCCTGAATGTGTTCGAACACTACGCTAAAGAGTTCAGGCCAGATCGACCGATTCAAGAATTCTGCCAAACACCACCAGGAGAAGACAACCGCATCGCAACATGGATCAACAACAATCTACTCCGACGGACAGAGCCATCATCAGCTAGTTATAACTTCGAAATAAATTTAATTTCCTTGATATTGCTTTTGATCATAACATGAAACTTTTTTTTGAAACAACAATTTATTTCAACAACAATAAGACCAGAGCTTATTCGTGGTCGCTTCCGTTGTCCTCTCCGTCGTTGATGTGGAAGTATCTGACCTCATAGGTGTTCTTGTTGACGGCGACCACACGGAGCCAGTCACGGAGGGAGTTTCTCTTAAGGTACTTCTTGGTAAGGTACTTGAGGTATCTGAAAATGAAAATGTTGTTAAAATTTATAAAAAATCCAAAACTGTACCTCTTGGAGAATGGGATCTCGGAGACGACGGAAACCTTGGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>330 221 124 118 113 37 31 26</canonical_bands>
                <polymorphic_bands>330 221 124 118 113 63 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTACCACTGTTTTCAGATACT</pcr_primer_p1>
		<pcr_primer_p2>TATAACTAGCTGATGATGGCTCT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TCCTACCACTGTTTTCAGATACTGTATCAGAAGAATATCAATCATACGTTCGAAGTAATCACTCCTCAAATAAAAAAATGCGAACATCGACAATTCTGCAGCCTGAATGTGTTCGAACACTACGCTAAAGAGTTCAGGCCAGATCGACCGATTCAAGAATTCTGCCAAACACCACCAGGAGAAGACAACCGCATCGCAACATGGATCAACAACAATCTACTCCGACGGACAGAGCCATCATCAGCTAGTTATA</canonical_amplicon>
		<polymorphic_amplicon>TCCTACCACTGTTTTCAGATACTGTATCAGAAGAATATCAATCATACGTTCGAAGTAATCACTCCTCAAATAAAAAAATGCGAACATYGACAATTCTGCAGCCTGAATGTGTTCGAACACTACGCTAAAGAGTTCAGGCCAGATCGACCGATTCAAGAATTCTGCCAAACACCACCAGGAGAAGACAACCGCATCGCAACATGGATCAACAACAATCTACTCCGACGGACAGAGCCATCATCAGCTAGTTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30688</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>583249</contig_pos>
        <strand>+</strand>
        <context>ATTCAAAAAA[A/T]GGACAAGAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGACAAGACCAAAACTAAAAATGCATATTCCAATAAATAATTCAAAAAA</left_flank>
        <right_flank>GGACAAGAACTTTTGAAAAACGTTGAGTGAAAAAAAGATGGACGAGGGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGAAATAAACTCTACAGGGTAGTGCCCAATTATCCGGACTGATAAAAAACGGGTATATCTTTAGACATACGTATTTTGGAAGCACAAAAATTGGTATGAATATAATTTTACGTTTGATTCAAAGCTACTTATATTTTCAAAGCGATCCCTCAAGCCTTGAGGATTATCCAAAGTTATGATTGTTCAAAGATGAACGGCGTAATGTTTCCTGTGATTTTCATGAGATGGAGCAACTTTGACATGCTATAAATCAGCTCGAAGTAAATCGAATAATTTGAAACTTGGTCAGTTTACTGATGAATTATTTGAATTTTTGCACTCCAAATTTGAGCACAGTAAAACGTTTCACTCAAATTATTTGTTAGTACAAACTTTCGTCAGATTAATTATGCGCCACCCTGATTTTCGATTTGAGAGCTTCACCTAGTAATCCTATTTTGAGTCGGTTAGACAAGACCAAAACTAAAAATGCATATTCCAATAAATAATTCAAAAAAAGGACAAGAACTTTTGAAAAACGTTGAGTGAAAAAAAGATGGACGAGGGTAAACACAATAGAGCCCTTTTGCTCTCACATCCACTACTACATCCTCTATTCTATTCTCTATCTTTTTTTTCCAGTTTTGGTGTAGTAGTGACACAATCATGAAGAAACGCAGAGAAATCAAGAAAAAGAAGAAGAAGACGCGGGCGGTCACTTCGAATGGGGGGCTCCACGACTTCCATGCTATATTTCTGCACTAAGTAGGCAGATAGAGCAAGAGCAAAAGGAGGAAAAGAAACTGAATGGAAGATGTGTTACACCACAGGCAGCTGTATAGTTGAAAAAAGCAGAAAAAGTTTGAAACGTTTTGGAGTATGTGACAATCATTCCTACAACTTTTTGGGTTAGAAGCTTTGAAGTCGTGGCAGAAGAGTACAACCATCAACTATATCCATAAACTGAAACCGAGTTACCGTAAACACCCAAATGGAGTGCCGCCCAAAAAAAGGTCATC</canonical>
            <polymorphic>AAAGAAATAAACTCTACAGGGTAGTGCCCAATTATCCGGACTGATAAAAAACGGGTATATCTTTAGACATACGTATTTTGGAAGCACAAAAATTGGTATGAATATAATTTTACGTTTGATTCAAAGCTACTTATATTTTCAAAGCGATCCCTCAAGCCTTGAGGATTATCCAAAGTTATGATTGTTCAAAGATGAACGGCGTAATGTTTCCTGTGATTTTCATGAGATGGAGCAACTTTGACATGCTATAAATCAGCTCGAAGTAAATCGAATAATTTGAAACTTGGTCAGTTTACTGATGAATTATTTGAATTTTTGCACTCCAAATTTGAGCACAGTAAAACGTTTCACTCAAATTATTTGTTAGTACAAACTTTCGTCAGATTAATTATGCGCCACCCTGATTTTCGATTTGAGAGCTTCACCTAGTAATCCTATTTTGAGTCGGTTAGACAAGACCAAAACTAAAAATGCATATTCCAATAAATAATTCAAAAAAWGGACAAGAACTTTTGAAAAACGTTGAGTGAAAAAAAGATGGACGAGGGTAAACACAATAGAGCCCTTTTGCTCTCACATCCACTACTACATCCTCTATTCTATTCTCTATCTTTTTTTTCCAGTTTTGGTGTAGTAGTGACACAATCATGAAGAAACGCAGAGAAATCAAGAAAAAGAAGAAGAAGACGCGGGCGGTCACTTCGAATGGGGGGCTCCACGACTTCCATGCTATATTTCTGCACTAAGTAGGCAGATAGAGCAAGAGCAAAAGGAGGAAAAGAAACTGAATGGAAGATGTGTTACACCACAGGCAGCTGTATAGTTGAAAAAAGCAGAAAAAGTTTGAAACGTTTTGGAGTATGTGACAATCATTCCTACAACTTTTTGGGTTAGAAGCTTTGAAGTCGTGGCAGAAGAGTACAACCATCAACTATATCCATAAACTGAAACCGAGTTACCGTAAACACCCAAATGGAGTGCCGCCCAAAAAAAGGTCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCTATTTTGAGTCGGTTAGAC</pcr_primer_p1>
		<pcr_primer_p2>TCTTCTTTTTCTTGATTTCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCCTATTTTGAGTCGGTTAGACAAGACCAAAACTAAAAATGCATATTCCAATAAATAATTCAAAAAAAGGACAAGAACTTTTGAAAAACGTTGAGTGAAAAAAAGATGGACGAGGGTAAACACAATAGAGCCCTTTTGCTCTCACATCCACTACTACATCCTCTATTCTATTCTCTATCTTTTTTTTCCAGTTTTGGTGTAGTAGTGACACAATCATGAAGAAACGCAGAGAAATCAAGAAAAAGAAGA</canonical_amplicon>
		<polymorphic_amplicon>ATCCTATTTTGAGTCGGTTAGACAAGACCAAAACTAAAAATGCATATTCCAATAAATAATTCAAAAAAWGGACAAGAACTTTTGAAAAACGTTGAGTGAAAAAAAGATGGACGAGGGTAAACACAATAGAGCCCTTTTGCTCTCACATCCACTACTACATCCTCTATTCTATTCTCTATCTTTTTTTTCCAGTTTTGGTGTAGTAGTGACACAATCATGAAGAAACGCAGAGAAATCAAGAAAAAGAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30689</snp_id>
        <super_contig>c005500792.Contig3</super_contig>
        <contig_pos>664792</contig_pos>
        <strand>+</strand>
        <context>TTAGTATATC[A/C]AGTTGCAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACGTCATCAGGAAGTGTTTCAATTTGATTTTCATTCAAGTTTAGTATATC</left_flank>
        <right_flank>AGTTGCAAACAGGCAATAATAGAAATAGGAAACTCCGAAAAAGAGTTAGA</right_flank>
        <qual_score>128</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTACAGAAGTAAAATGTTCATTGAATCATCAAGCTGAATAACTATGATAAGAAACAACCGGAGGTTTTACAGACTCAAATAAACATAATAAATATTATATATTTGAAAAATGGCGATGAGAGGCATTATTAAATCTTTCTTTTAGTAGCGGTGAATCGTTCTTGATAAGCATCATATCCGGGCAAGTCTTGGAAATCTTTCAACTGGAAACGGTTCCCATCATAAGTGATAACGGACACAGTAGAAGATTCGAGAAGATCACGAGCAAACTCAGTTTTTTCTAGACAGTTTCCATCCACTCGGAGAGTGCGAAGTCGATGAGATTTTGAGAGGTTCGATGAATTCAAAGTTTTTAGACGATTCTGGCTGAGACTGAGTTCAATGACTTGCAATTTTGATACCTGAAATAGGTTTTCTGCTTTTTATTATGCCATTATTAACAACTTACGTCATCAGGAAGTGTTTCAATTTGATTTTCATTCAAGTTTAGTATATCAAGTTGCAAACAGGCAATAATAGAAATAGGAAACTCCGAAAAAGAGTTAGAGGAGACATCAATCGTTCGCAAGTCCGTACATCCAGCTATCGTATCTGGTAGGTTCTTGATTTTGTTACCTCCAAGGTTCAAAATTTCTAGTTTTTTCATTGAACCAATTTCATCTGGTAAACTTTCTAGGCAGTTATTGGATAAATGAAGTTGTTTTAATTGTGAGAACAGTCCGATGAAAACCGGTATCTCGCGGATTTTGTTCTCGCTCAACTCCAAGTTCCGCAATACTCCTGCTAACTGCTCTACTTCATCAGGAATTTTCTTCAGTCCAGTTCCCTTCAGTTGTAGAACTCGACTTTTGCTTGCCATCTCAAGGTGTTTATTAACAGTTGATGTGGAAGGACCCGACTGACCTGAAAAGAATAGTAATTAAGTAATATAAATAAAGGATTGATTACCAATGAGTTTGCGGGCATTGCTGGTGACGGACTTTGATTTCGAGGAGTC</canonical>
            <polymorphic>TATTTACAGAAGTAAAATGTTCATTGAATCATCAAGCTGAATAACTATGATAAGAAACAACCGGAGGTTTTACAGACTCAAATAAACATAATAAATATTATATATTTGAAAAATGGCGATGAGAGGCATTATTAAATCTTTCTTTTAGTAGCGGTGAATCGTTCTTGATAAGCATCATATCCGGGCAAGTCTTGGAAATCTTTCAACTGGAAACGGTTCCCATCATAAGTGATAACGGACACAGTAGAAGATTCGAGAAGATCACGAGCAAACTCAGTTTTTTCTAGACAGTTTCCATCCACTCGGAGAGTGCGAAGTCGATGAGATTTTGAGAGGTTCGATGAATTCAAAGTTTTTAGACGATTCTGGCTGAGACTGAGTTCAATGACTTGCAATTTTGATACCTGAAATAGGTTTTCTGCTTTTTATTATGCCATTATTAACAACTTACGTCATCAGGAAGTGTTTCAATTTGATTTTCATTCAAGTTTAGTATATCMAGTTGCAAACAGGCAATAATAGAAATAGGAAACTCCGAAAAAGAGTTAGAGGAGACATCAATCGTTCGCAAGTCCGTACATCCAGCTATCGTATCTGGTAGGTTCTTGATTTTGTTACCTCCAAGGTTCAAAATTTCTAGTTTTTTCATTGAACCAATTTCATCTGGTAAACTTTCTAGGCAGTTATTGGATAAATGAAGTTGTTTTAATTGTGAGAACAGTCCGATGAAAACCGGTATCTCGCGGATTTTGTTCTCGCTCAACTCCAAGTTCCGCAATACTCCTGCTAACTGCTCTACTTCATCAGGAATTTTCTTCAGTCCAGTTCCCTTCAGTTGTAGAACTCGACTTTTGCTTGCCATCTCAAGGTGTTTATTAACAGTTGATGTGGAAGGACCCGACTGACCTGAAAAGAATAGTAATTAAGTAATATAAATAAAGGATTGATTACCAATGAGTTTGCGGGCATTGCTGGTGACGGACTTTGATTTCGAGGAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTACGTCATCAGGAAGTGTT</pcr_primer_p1>
		<pcr_primer_p2>TTTATCCAATAACTGCCTAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTACGTCATCAGGAAGTGTTTCAATTTGATTTTCATTCAAGTTTAGTATATCAAGTTGCAAACAGGCAATAATAGAAATAGGAAACTCCGAAAAAGAGTTAGAGGAGACATCAATCGTTCGCAAGTCCGTACATCCAGCTATCGTATCTGGTAGGTTCTTGATTTTGTTACCTCCAAGGTTCAAAATTTCTAGTTTTTTCATTGAACCAATTTCATCTGGTAAACTTTCTAGGCAGTTATTGGATAAA</canonical_amplicon>
		<polymorphic_amplicon>ACTTACGTCATCAGGAAGTGTTTCAATTTGATTTTCATTCAAGTTTAGTATATCMAGTTGCAAACAGGCAATAATAGAAATAGGAAACTCCGAAAAAGAGTTAGAGGAGACATCAATCGTTCGCAAGTCCGTACATCCAGCTATCGTATCTGGTAGGTTCTTGATTTTGTTACCTCCAAGGTTCAAAATTTCTAGTTTTTTCATTGAACCAATTTCATCTGGTAAACTTTCTAGGCAGTTATTGGATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30690</snp_id>
        <super_contig>c005500930.Contig1</super_contig>
        <contig_pos>29756</contig_pos>
        <strand></strand>
        <context>attCACAAAA[A/C]AATTCTACAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATAAATTTAAAAAATTTCAAAATTTTTTAATGTAAAAAAATTCACAAAA</left_flank>
        <right_flank>AATTCTACAGTAATCCTTTCAAAAATTGTCTCAAATTGTCTGAAATATTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATCAAAAATCTGAATCAAGGTCGAAAATGAAATTTTAGATTTTCAGAATTTTCTGGAAAGCAAAAATTCCGGGTCCTGGGTCCTGGGTCCTGGGTCCTGGGTCCTGGGTCCTGGGTCATGGGTCCTGGGTCCTGGGTCTCCCAAAATTTCTTTAATTCCAATTTTCGAGTTTCTGAGTTTCTAAATTTAAGAATATCAGAATTTCTTAGAACTCTGATTTTTAGAATACAACTTCTGGTGAATCGTAAGTTTCAGAATTTTTGGTATCTCTGAACTGCTTTCTCATCATTTGGAAATTCGGGAAATTCAATTTTTCTGAAAATCTGAAAACTTGGAAAGAATAAAAGTTTTATTTCTAAAAAAACTCGTCGAAAAATATATAAGTTCATACATACAACTGTTACACAGGGAGAAAAAAAGTATGTAATAATACCCGTTCGGACAAAAATATAAATTTAAAAAATTTCAAAATTTTTTAATGTAAAAAAATTCACAAAAAAATTCTACAGTAATCCTTTCAAAAATTGTCTCAAATTGTCTGAAATATTCAAAAATTAAATAAGCAAATCTACAGTAATCCTCTCCAAATTTGCCTTATCCTCTGCCAACACATCCTCTGGACGAGCAAAAAATGTACAATCCCGTATCCTTATCACCCATATATCCATTTCCATGCGAATCCACGTGGATCCCATTTCCAATATATCGATCTTTCCCATAATATGGGCGGAGCCTACGCTGAGGGGGCGGGATTCCCAAAATCCTGTCGAGCACAGCGTATGGTGATGTGAATTGAGGAGCTGGAGCATAGTTTTGGGAATATGATAAGAATTTTGATAATTCTGATAGTAGGACTGTTGATACTGTGGATACTGTTGATAAATTTGCTGATAAGGTTTACGGTAGTTGTAGTATGGATTACTGTAGTAGCCGTTACTGTAATAGGCGTTGTTACCGTAGCCAGAATACTGATAGCTTGGTGGGGTATGGTAGTTACCG</canonical>
            <polymorphic>GATCAAAAATCTGAATCAAGGTCGAAAATGAAATTTTAGATTTTCAGAATTTTCTGGAAAGCAAAAATTCCGGGTCCTGGGTCCTGGGTCCTGGGTCCTGGGTCCTGGGTCCTGGGTCATGGGTCCTGGGTCCTGGGTCTCCCAAAATTTCTTTAATTCCAATTTTCGAGTTTCTGAGTTTCTAAATTTAAGAATATCAGAATTTCTTAGAACTCTGATTTTTAGAATACAACTTCTGGTGAATCGTAAGTTTCAGAATTTTTGGTATCTCTGAACTGCTTTCTCATCATTTGGAAATTCGGGAAATTCAATTTTTCTGAAAATCTGAAAACTTGGAAAGAATAAAAGTTTTATTTCTAAAAAAACTCGTCGAAAAATATATAAGTTCATACATACAACTGTTACACAGGGAGAAAAAAAGTATGTAATAATACCCGTTCGGACAAAAATATAAATTTAAAAAATTTCAAAATTTTTTAATGTAAAAAAATTCACAAAAMAATTCTACAGTAATCCTTTCAAAAATTGTCTCAAATTGTCTGAAATATTCAAAAATTAAATAAGCAAATCTACAGTAATCCTCTCCAAATTTGCCTTATCCTCTGCCAACACATCCTCTGGACGAGCAAAAAATGTACAATCCCGTATCCTTATCACCCATATATCCATTTCCATGCGAATCCACGTGGATCCCATTTCCAATATATCGATCTTTCCCATAATATGGGCGGAGCCTACGCTGAGGGGGCGGGATTCCCAAAATCCTGTCGAGCACAGCGTATGGTGATGTGAATTGAGGAGCTGGAGCATAGTTTTGGGAATATGATAAGAATTTTGATAATTCTGATAGTAGGACTGTTGATACTGTGGATACTGTTGATAAATTTGCTGATAAGGTTTACGGTAGTTGTAGTATGGATTACTGTAGTAGCCGTTACTGTAATAGGCGTTGTTACCGTAGCCAGAATACTGATAGCTTGGTGGGGTATGGTAGTTACCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>243 149 118 87 80 56 52 39 39 31 18 18 16 16 12 9 9 8</canonical_bands>
                <polymorphic_bands>243 149 118 99 80 56 52 39 39 31 18 18 16 16 9 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCGTCGAAAAATATATAAGTTCA</pcr_primer_p1>
		<pcr_primer_p2>ATGTGTTGGCAGAGGATAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCGTCGAAAAATATATAAGTTCATACATACAACTGTTACACAGGGAGAAAAAAAGTATGTAATAATACCCGTTCGGACAAAAATATAAATTTAAAAAATTTCAAAATTTTTTAATGTAAAAAAATTCACAAAAAAATTCTACAGTAATCCTTTCAAAAATTGTCTCAAATTGTCTGAAATATTCAAAAATTAAATAAGCAAATCTACAGTAATCCTCTCCAAATTTGCCTTATCCTCTGCCAACACAT</canonical_amplicon>
		<polymorphic_amplicon>CTCGTCGAAAAATATATAAGTTCATACATACAACTGTTACACAGGGAGAAAAAAAGTATGTAATAATACCCGTTCGGACAAAAATATAAATTTAAAAAATTTCAAAATTTTTTAATGTAAAAAAATTCACAAAAMAATTCTACAGTAATCCTTTCAAAAATTGTCTCAAATTGTCTGAAATATTCAAAAATTAAATAAGCAAATCTACAGTAATCCTCTCCAAATTTGCCTTATCCTCTGCCAACACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30691</snp_id>
        <super_contig>c005500930.Contig1</super_contig>
        <contig_pos>36201</contig_pos>
        <strand></strand>
        <context>gccgagatac[T/A]gagatttgaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATAC</left_flank>
        <right_flank>GAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAAC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTGAATCTATGGTTTACAATTTAGGTTCATCCAACCATATGATCAAATTTGGAATTGGGAGTTCAAATTTCACGATTTTCTCAAAATGTTTGGCTTTCTAGGGGTTTCTAGAATTTCAGATTTTTGAGAAAGTGTAAAATTCTATATTCATCGAAAAGTTTGAAAGTTCTAGCGCAATTTTGAGCCGAGATATGCTCACTTGAAAATTGGGAGGCTAGAGACGCCAGACAACGAGACACTCTAACTGTCTGCGTCTCTTCGAAACTTCAAATAGATGTATCTCGGGTTCTAGAAGAGCTAGAAACGTGATTTATTTTTCGAAAAACATTACTGAATCTCGGAATCTTATTGTGTGCCAAAGTACTGTATATTTGTAACTTTCAGGTCTCAAAAATGTTTTTGAATTTTTGAGTTTTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCCAAATCTTTCATCTTCTTTTTTCCTTCTCTTATCAATCACCTCTTTTTTAATTTTTCAAAAAACATTGAACCTGTTAACTACTTCCAATTATTCCTATAAAAGAGACCCCATTATTCCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAATAATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTTCTCCAAGATTTCCATCAAAACCTTTAAGCTCCGCCCACAATGTCAACCCTTACTATTCTTATCGCTATGGCA</canonical>
            <polymorphic>ATTTGAATCTATGGTTTACAATTTAGGTTCATCCAACCATATGATCAAATTTGGAATTGGGAGTTCAAATTTCACGATTTTCTCAAAATGTTTGGCTTTCTAGGGGTTTCTAGAATTTCAGATTTTTGAGAAAGTGTAAAATTCTATATTCATCGAAAAGTTTGAAAGTTCTAGCGCAATTTTGAGCCGAGATATGCTCACTTGAAAATTGGGAGGCTAGAGACGCCAGACAACGAGACACTCTAACTGTCTGCGTCTCTTCGAAACTTCAAATAGATGTATCTCGGGTTCTAGAAGAGCTAGAAACGTGATTTATTTTTCGAAAAACATTACTGAATCTCGGAATCTTATTGTGTGCCAAAGTACTGTATATTTGTAACTTTCAGGTCTCAAAAATGTTTTTGAATTTTTGAGTTTTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACWGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCCAAATCTTTCATCTTCTTTTTTCCTTCTCTTATCAATCACCTCTTTTTTAATTTTTCAAAAAACATTGAACCTGTTAACTACTTCCAATTATTCCTATAAAAGAGACCCCATTATTCCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAATAATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTTCTCCAAGATTTCCATCAAAACCTTTAAGCTCCGCCCACAATGTCAACCCTTACTATTCTTATCGCTATGGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>499 375 79 47</canonical_bands>
                <polymorphic_bands>874 79 47</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTTGATTGTCGTAAAATAGACT</pcr_primer_p1>
		<pcr_primer_p2>GGAGTCCAAAATGGTACAAG</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>TTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCC</canonical_amplicon>
		<polymorphic_amplicon>TTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACWGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30692</snp_id>
        <super_contig>c005500930.Contig1</super_contig>
        <contig_pos>36252</contig_pos>
        <strand>+</strand>
        <context>acactctaac[A/T]rtctkcgtct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAAC</left_flank>
        <right_flank>GTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAATTGGGAGTTCAAATTTCACGATTTTCTCAAAATGTTTGGCTTTCTAGGGGTTTCTAGAATTTCAGATTTTTGAGAAAGTGTAAAATTCTATATTCATCGAAAAGTTTGAAAGTTCTAGCGCAATTTTGAGCCGAGATATGCTCACTTGAAAATTGGGAGGCTAGAGACGCCAGACAACGAGACACTCTAACTGTCTGCGTCTCTTCGAAACTTCAAATAGATGTATCTCGGGTTCTAGAAGAGCTAGAAACGTGATTTATTTTTCGAAAAACATTACTGAATCTCGGAATCTTATTGTGTGCCAAAGTACTGTATATTTGTAACTTTCAGGTCTCAAAAATGTTTTTGAATTTTTGAGTTTTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCCAAATCTTTCATCTTCTTTTTTCCTTCTCTTATCAATCACCTCTTTTTTAATTTTTCAAAAAACATTGAACCTGTTAACTACTTCCAATTATTCCTATAAAAGAGACCCCATTATTCCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAATAATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTTCTCCAAGATTTCCATCAAAACCTTTAAGCTCCGCCCACAATGTCAACCCTTACTATTCTTATCGCTATGGCAATGGTTTTGATGGTATCAGCGGGACCATACGGATACCGAAATTATGGATAC</canonical>
            <polymorphic>TGGAATTGGGAGTTCAAATTTCACGATTTTCTCAAAATGTTTGGCTTTCTAGGGGTTTCTAGAATTTCAGATTTTTGAGAAAGTGTAAAATTCTATATTCATCGAAAAGTTTGAAAGTTCTAGCGCAATTTTGAGCCGAGATATGCTCACTTGAAAATTGGGAGGCTAGAGACGCCAGACAACGAGACACTCTAACTGTCTGCGTCTCTTCGAAACTTCAAATAGATGTATCTCGGGTTCTAGAAGAGCTAGAAACGTGATTTATTTTTCGAAAAACATTACTGAATCTCGGAATCTTATTGTGTGCCAAAGTACTGTATATTTGTAACTTTCAGGTCTCAAAAATGTTTTTGAATTTTTGAGTTTTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACWGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCCAAATCTTTCATCTTCTTTTTTCCTTCTCTTATCAATCACCTCTTTTTTAATTTTTCAAAAAACATTGAACCTGTTAACTACTTCCAATTATTCCTATAAAAGAGACCCCATTATTCCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAATAATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTTCTCCAAGATTTCCATCAAAACCTTTAAGCTCCGCCCACAATGTCAACCCTTACTATTCTTATCGCTATGGCAATGGTTTTGATGGTATCAGCGGGACCATACGGATACCGAAATTATGGATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTTGATTGTCGTAAAATAGACT</pcr_primer_p1>
		<pcr_primer_p2>GGAGTCCAAAATGGTACAAG</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>TTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCC</canonical_amplicon>
		<polymorphic_amplicon>TTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACWGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30693</snp_id>
        <super_contig>c005500930.Contig1</super_contig>
        <contig_pos>36253</contig_pos>
        <strand>+</strand>
        <context>cactctaacw[A/G]tctkcgtctc</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACA</left_flank>
        <right_flank>TCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAATTGGGAGTTCAAATTTCACGATTTTCTCAAAATGTTTGGCTTTCTAGGGGTTTCTAGAATTTCAGATTTTTGAGAAAGTGTAAAATTCTATATTCATCGAAAAGTTTGAAAGTTCTAGCGCAATTTTGAGCCGAGATATGCTCACTTGAAAATTGGGAGGCTAGAGACGCCAGACAACGAGACACTCTAACTGTCTGCGTCTCTTCGAAACTTCAAATAGATGTATCTCGGGTTCTAGAAGAGCTAGAAACGTGATTTATTTTTCGAAAAACATTACTGAATCTCGGAATCTTATTGTGTGCCAAAGTACTGTATATTTGTAACTTTCAGGTCTCAAAAATGTTTTTGAATTTTTGAGTTTTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCCAAATCTTTCATCTTCTTTTTTCCTTCTCTTATCAATCACCTCTTTTTTAATTTTTCAAAAAACATTGAACCTGTTAACTACTTCCAATTATTCCTATAAAAGAGACCCCATTATTCCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAATAATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTTCTCCAAGATTTCCATCAAAACCTTTAAGCTCCGCCCACAATGTCAACCCTTACTATTCTTATCGCTATGGCAATGGTTTTGATGGTATCAGCGGGACCATACGGATACCGAAATTATGGATACA</canonical>
            <polymorphic>GGAATTGGGAGTTCAAATTTCACGATTTTCTCAAAATGTTTGGCTTTCTAGGGGTTTCTAGAATTTCAGATTTTTGAGAAAGTGTAAAATTCTATATTCATCGAAAAGTTTGAAAGTTCTAGCGCAATTTTGAGCCGAGATATGCTCACTTGAAAATTGGGAGGCTAGAGACGCCAGACAACGAGACACTCTAACTGTCTGCGTCTCTTCGAAACTTCAAATAGATGTATCTCGGGTTCTAGAAGAGCTAGAAACGTGATTTATTTTTCGAAAAACATTACTGAATCTCGGAATCTTATTGTGTGCCAAAGTACTGTATATTTGTAACTTTCAGGTCTCAAAAATGTTTTTGAATTTTTGAGTTTTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACARTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCCAAATCTTTCATCTTCTTTTTTCCTTCTCTTATCAATCACCTCTTTTTTAATTTTTCAAAAAACATTGAACCTGTTAACTACTTCCAATTATTCCTATAAAAGAGACCCCATTATTCCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAATAATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTTCTCCAAGATTTCCATCAAAACCTTTAAGCTCCGCCCACAATGTCAACCCTTACTATTCTTATCGCTATGGCAATGGTTTTGATGGTATCAGCGGGACCATACGGATACCGAAATTATGGATACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 196 184 119</canonical_bands>
                <polymorphic_bands>685 196 119</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTTGATTGTCGTAAAATAGACT</pcr_primer_p1>
		<pcr_primer_p2>GGAGTCCAAAATGGTACAAG</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>TTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCC</canonical_amplicon>
		<polymorphic_amplicon>TTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACARTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30694</snp_id>
        <super_contig>c005500930.Contig1</super_contig>
        <contig_pos>36257</contig_pos>
        <strand>+</strand>
        <context>ctaacwrtct[G/T]cgtctcttcr</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCT</left_flank>
        <right_flank>CGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGGAGTTCAAATTTCACGATTTTCTCAAAATGTTTGGCTTTCTAGGGGTTTCTAGAATTTCAGATTTTTGAGAAAGTGTAAAATTCTATATTCATCGAAAAGTTTGAAAGTTCTAGCGCAATTTTGAGCCGAGATATGCTCACTTGAAAATTGGGAGGCTAGAGACGCCAGACAACGAGACACTCTAACTGTCTGCGTCTCTTCGAAACTTCAAATAGATGTATCTCGGGTTCTAGAAGAGCTAGAAACGTGATTTATTTTTCGAAAAACATTACTGAATCTCGGAATCTTATTGTGTGCCAAAGTACTGTATATTTGTAACTTTCAGGTCTCAAAAATGTTTTTGAATTTTTGAGTTTTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCCAAATCTTTCATCTTCTTTTTTCCTTCTCTTATCAATCACCTCTTTTTTAATTTTTCAAAAAACATTGAACCTGTTAACTACTTCCAATTATTCCTATAAAAGAGACCCCATTATTCCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAATAATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTTCTCCAAGATTTCCATCAAAACCTTTAAGCTCCGCCCACAATGTCAACCCTTACTATTCTTATCGCTATGGCAATGGTTTTGATGGTATCAGCGGGACCATACGGATACCGAAATTATGGATACAACAA</canonical>
            <polymorphic>TTGGGAGTTCAAATTTCACGATTTTCTCAAAATGTTTGGCTTTCTAGGGGTTTCTAGAATTTCAGATTTTTGAGAAAGTGTAAAATTCTATATTCATCGAAAAGTTTGAAAGTTCTAGCGCAATTTTGAGCCGAGATATGCTCACTTGAAAATTGGGAGGCTAGAGACGCCAGACAACGAGACACTCTAACTGTCTGCGTCTCTTCGAAACTTCAAATAGATGTATCTCGGGTTCTAGAAGAGCTAGAAACGTGATTTATTTTTCGAAAAACATTACTGAATCTCGGAATCTTATTGTGTGCCAAAGTACTGTATATTTGTAACTTTCAGGTCTCAAAAATGTTTTTGAATTTTTGAGTTTTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTKCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCCAAATCTTTCATCTTCTTTTTTCCTTCTCTTATCAATCACCTCTTTTTTAATTTTTCAAAAAACATTGAACCTGTTAACTACTTCCAATTATTCCTATAAAAGAGACCCCATTATTCCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAATAATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTTCTCCAAGATTTCCATCAAAACCTTTAAGCTCCGCCCACAATGTCAACCCTTACTATTCTTATCGCTATGGCAATGGTTTTGATGGTATCAGCGGGACCATACGGATACCGAAATTATGGATACAACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTTGATTGTCGTAAAATAGACT</pcr_primer_p1>
		<pcr_primer_p2>GGAGTCCAAAATGGTACAAG</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>TTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCC</canonical_amplicon>
		<polymorphic_amplicon>TTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTKCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30695</snp_id>
        <super_contig>c005500930.Contig1</super_contig>
        <contig_pos>36267</contig_pos>
        <strand>+</strand>
        <context>kcgtctcttc[A/G]aaacttywaa</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTC</left_flank>
        <right_flank>AAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTCACGATTTTCTCAAAATGTTTGGCTTTCTAGGGGTTTCTAGAATTTCAGATTTTTGAGAAAGTGTAAAATTCTATATTCATCGAAAAGTTTGAAAGTTCTAGCGCAATTTTGAGCCGAGATATGCTCACTTGAAAATTGGGAGGCTAGAGACGCCAGACAACGAGACACTCTAACTGTCTGCGTCTCTTCGAAACTTCAAATAGATGTATCTCGGGTTCTAGAAGAGCTAGAAACGTGATTTATTTTTCGAAAAACATTACTGAATCTCGGAATCTTATTGTGTGCCAAAGTACTGTATATTTGTAACTTTCAGGTCTCAAAAATGTTTTTGAATTTTTGAGTTTTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCCAAATCTTTCATCTTCTTTTTTCCTTCTCTTATCAATCACCTCTTTTTTAATTTTTCAAAAAACATTGAACCTGTTAACTACTTCCAATTATTCCTATAAAAGAGACCCCATTATTCCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAATAATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTTCTCCAAGATTTCCATCAAAACCTTTAAGCTCCGCCCACAATGTCAACCCTTACTATTCTTATCGCTATGGCAATGGTTTTGATGGTATCAGCGGGACCATACGGATACCGAAATTATGGATACAACAATGGCTACCGT</canonical>
            <polymorphic>AAATTTCACGATTTTCTCAAAATGTTTGGCTTTCTAGGGGTTTCTAGAATTTCAGATTTTTGAGAAAGTGTAAAATTCTATATTCATCGAAAAGTTTGAAAGTTCTAGCGCAATTTTGAGCCGAGATATGCTCACTTGAAAATTGGGAGGCTAGAGACGCCAGACAACGAGACACTCTAACTGTCTGCGTCTCTTCRAAACTTCAAATAGATGTATCTCGGGTTCTAGAAGAGCTAGAAACGTGATTTATTTTTCGAAAAACATTACTGAATCTCGGAATCTTATTGTGTGCCAAAGTACTGTATATTTGTAACTTTCAGGTCTCAAAAATGTTTTTGAATTTTTGAGTTTTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCCAAATCTTTCATCTTCTTTTTTCCTTCTCTTATCAATCACCTCTTTTTTAATTTTTCAAAAAACATTGAACCTGTTAACTACTTCCAATTATTCCTATAAAAGAGACCCCATTATTCCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAATAATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTTCTCCAAGATTTCCATCAAAACCTTTAAGCTCCGCCCACAATGTCAACCCTTACTATTCTTATCGCTATGGCAATGGTTTTGATGGTATCAGCGGGACCATACGGATACCGAAATTATGGATACAACAATGGCTACCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 244 195 59</canonical_bands>
                <polymorphic_bands>502 254 244</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>281 244 197 108 88 59 23</canonical_bands>
                <polymorphic_bands>281 244 197 167 88 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTTGATTGTCGTAAAATAGACT</pcr_primer_p1>
		<pcr_primer_p2>GGAGTCCAAAATGGTACAAG</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>TTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCC</canonical_amplicon>
		<polymorphic_amplicon>TTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30696</snp_id>
        <super_contig>c005500930.Contig1</super_contig>
        <contig_pos>36274</contig_pos>
        <strand>+</strand>
        <context>ttcraaactt[C/T]waatggctkt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTT</left_flank>
        <right_flank>AAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGATTTTCTCAAAATGTTTGGCTTTCTAGGGGTTTCTAGAATTTCAGATTTTTGAGAAAGTGTAAAATTCTATATTCATCGAAAAGTTTGAAAGTTCTAGCGCAATTTTGAGCCGAGATATGCTCACTTGAAAATTGGGAGGCTAGAGACGCCAGACAACGAGACACTCTAACTGTCTGCGTCTCTTCGAAACTTCAAATAGATGTATCTCGGGTTCTAGAAGAGCTAGAAACGTGATTTATTTTTCGAAAAACATTACTGAATCTCGGAATCTTATTGTGTGCCAAAGTACTGTATATTTGTAACTTTCAGGTCTCAAAAATGTTTTTGAATTTTTGAGTTTTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCCAAATCTTTCATCTTCTTTTTTCCTTCTCTTATCAATCACCTCTTTTTTAATTTTTCAAAAAACATTGAACCTGTTAACTACTTCCAATTATTCCTATAAAAGAGACCCCATTATTCCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAATAATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTTCTCCAAGATTTCCATCAAAACCTTTAAGCTCCGCCCACAATGTCAACCCTTACTATTCTTATCGCTATGGCAATGGTTTTGATGGTATCAGCGGGACCATACGGATACCGAAATTATGGATACAACAATGGCTACCGTAACCAGT</canonical>
            <polymorphic>ACGATTTTCTCAAAATGTTTGGCTTTCTAGGGGTTTCTAGAATTTCAGATTTTTGAGAAAGTGTAAAATTCTATATTCATCGAAAAGTTTGAAAGTTCTAGCGCAATTTTGAGCCGAGATATGCTCACTTGAAAATTGGGAGGCTAGAGACGCCAGACAACGAGACACTCTAACTGTCTGCGTCTCTTCGAAACTTCAAATAGATGTATCTCGGGTTCTAGAAGAGCTAGAAACGTGATTTATTTTTCGAAAAACATTACTGAATCTCGGAATCTTATTGTGTGCCAAAGTACTGTATATTTGTAACTTTCAGGTCTCAAAAATGTTTTTGAATTTTTGAGTTTTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTYAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCCAAATCTTTCATCTTCTTTTTTCCTTCTCTTATCAATCACCTCTTTTTTAATTTTTCAAAAAACATTGAACCTGTTAACTACTTCCAATTATTCCTATAAAAGAGACCCCATTATTCCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAATAATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTTCTCCAAGATTTCCATCAAAACCTTTAAGCTCCGCCCACAATGTCAACCCTTACTATTCTTATCGCTATGGCAATGGTTTTGATGGTATCAGCGGGACCATACGGATACCGAAATTATGGATACAACAATGGCTACCGTAACCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTTGATTGTCGTAAAATAGACT</pcr_primer_p1>
		<pcr_primer_p2>GGAGTCCAAAATGGTACAAG</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>TTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCC</canonical_amplicon>
		<polymorphic_amplicon>TTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTYAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30697</snp_id>
        <super_contig>c005500930.Contig1</super_contig>
        <contig_pos>36275</contig_pos>
        <strand>+</strand>
        <context>tcraaactty[A/T]aatggctkta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTC</left_flank>
        <right_flank>AATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATTTTCTCAAAATGTTTGGCTTTCTAGGGGTTTCTAGAATTTCAGATTTTTGAGAAAGTGTAAAATTCTATATTCATCGAAAAGTTTGAAAGTTCTAGCGCAATTTTGAGCCGAGATATGCTCACTTGAAAATTGGGAGGCTAGAGACGCCAGACAACGAGACACTCTAACTGTCTGCGTCTCTTCGAAACTTCAAATAGATGTATCTCGGGTTCTAGAAGAGCTAGAAACGTGATTTATTTTTCGAAAAACATTACTGAATCTCGGAATCTTATTGTGTGCCAAAGTACTGTATATTTGTAACTTTCAGGTCTCAAAAATGTTTTTGAATTTTTGAGTTTTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCCAAATCTTTCATCTTCTTTTTTCCTTCTCTTATCAATCACCTCTTTTTTAATTTTTCAAAAAACATTGAACCTGTTAACTACTTCCAATTATTCCTATAAAAGAGACCCCATTATTCCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAATAATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTTCTCCAAGATTTCCATCAAAACCTTTAAGCTCCGCCCACAATGTCAACCCTTACTATTCTTATCGCTATGGCAATGGTTTTGATGGTATCAGCGGGACCATACGGATACCGAAATTATGGATACAACAATGGCTACCGTAACCAGTA</canonical>
            <polymorphic>CGATTTTCTCAAAATGTTTGGCTTTCTAGGGGTTTCTAGAATTTCAGATTTTTGAGAAAGTGTAAAATTCTATATTCATCGAAAAGTTTGAAAGTTCTAGCGCAATTTTGAGCCGAGATATGCTCACTTGAAAATTGGGAGGCTAGAGACGCCAGACAACGAGACACTCTAACTGTCTGCGTCTCTTCGAAACTTCAAATAGATGTATCTCGGGTTCTAGAAGAGCTAGAAACGTGATTTATTTTTCGAAAAACATTACTGAATCTCGGAATCTTATTGTGTGCCAAAGTACTGTATATTTGTAACTTTCAGGTCTCAAAAATGTTTTTGAATTTTTGAGTTTTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCWAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCCAAATCTTTCATCTTCTTTTTTCCTTCTCTTATCAATCACCTCTTTTTTAATTTTTCAAAAAACATTGAACCTGTTAACTACTTCCAATTATTCCTATAAAAGAGACCCCATTATTCCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAATAATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTTCTCCAAGATTTCCATCAAAACCTTTAAGCTCCGCCCACAATGTCAACCCTTACTATTCTTATCGCTATGGCAATGGTTTTGATGGTATCAGCGGGACCATACGGATACCGAAATTATGGATACAACAATGGCTACCGTAACCAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTTGATTGTCGTAAAATAGACT</pcr_primer_p1>
		<pcr_primer_p2>GGAGTCCAAAATGGTACAAG</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>TTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCC</canonical_amplicon>
		<polymorphic_amplicon>TTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCWAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30698</snp_id>
        <super_contig>c005500930.Contig1</super_contig>
        <contig_pos>36283</contig_pos>
        <strand>+</strand>
        <context>tywaatggct[G/T]tatctcgact</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCT</left_flank>
        <right_flank>TATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAATGTTTGGCTTTCTAGGGGTTTCTAGAATTTCAGATTTTTGAGAAAGTGTAAAATTCTATATTCATCGAAAAGTTTGAAAGTTCTAGCGCAATTTTGAGCCGAGATATGCTCACTTGAAAATTGGGAGGCTAGAGACGCCAGACAACGAGACACTCTAACTGTCTGCGTCTCTTCGAAACTTCAAATAGATGTATCTCGGGTTCTAGAAGAGCTAGAAACGTGATTTATTTTTCGAAAAACATTACTGAATCTCGGAATCTTATTGTGTGCCAAAGTACTGTATATTTGTAACTTTCAGGTCTCAAAAATGTTTTTGAATTTTTGAGTTTTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCCAAATCTTTCATCTTCTTTTTTCCTTCTCTTATCAATCACCTCTTTTTTAATTTTTCAAAAAACATTGAACCTGTTAACTACTTCCAATTATTCCTATAAAAGAGACCCCATTATTCCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAATAATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTTCTCCAAGATTTCCATCAAAACCTTTAAGCTCCGCCCACAATGTCAACCCTTACTATTCTTATCGCTATGGCAATGGTTTTGATGGTATCAGCGGGACCATACGGATACCGAAATTATGGATACAACAATGGCTACCGTAACCAGTATGCTACTC</canonical>
            <polymorphic>TCAAAATGTTTGGCTTTCTAGGGGTTTCTAGAATTTCAGATTTTTGAGAAAGTGTAAAATTCTATATTCATCGAAAAGTTTGAAAGTTCTAGCGCAATTTTGAGCCGAGATATGCTCACTTGAAAATTGGGAGGCTAGAGACGCCAGACAACGAGACACTCTAACTGTCTGCGTCTCTTCGAAACTTCAAATAGATGTATCTCGGGTTCTAGAAGAGCTAGAAACGTGATTTATTTTTCGAAAAACATTACTGAATCTCGGAATCTTATTGTGTGCCAAAGTACTGTATATTTGTAACTTTCAGGTCTCAAAAATGTTTTTGAATTTTTGAGTTTTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTKTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCCAAATCTTTCATCTTCTTTTTTCCTTCTCTTATCAATCACCTCTTTTTTAATTTTTCAAAAAACATTGAACCTGTTAACTACTTCCAATTATTCCTATAAAAGAGACCCCATTATTCCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAATAATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTTCTCCAAGATTTCCATCAAAACCTTTAAGCTCCGCCCACAATGTCAACCCTTACTATTCTTATCGCTATGGCAATGGTTTTGATGGTATCAGCGGGACCATACGGATACCGAAATTATGGATACAACAATGGCTACCGTAACCAGTATGCTACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTTGATTGTCGTAAAATAGACT</pcr_primer_p1>
		<pcr_primer_p2>GGAGTCCAAAATGGTACAAG</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>TTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCC</canonical_amplicon>
		<polymorphic_amplicon>TTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTKTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30699</snp_id>
        <super_contig>c005500930.Contig1</super_contig>
        <contig_pos>36306</contig_pos>
        <strand></strand>
        <context>caagaaagct[A/G]gaatgctagt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCT</left_flank>
        <right_flank>GAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTCTAGAATTTCAGATTTTTGAGAAAGTGTAAAATTCTATATTCATCGAAAAGTTTGAAAGTTCTAGCGCAATTTTGAGCCGAGATATGCTCACTTGAAAATTGGGAGGCTAGAGACGCCAGACAACGAGACACTCTAACTGTCTGCGTCTCTTCGAAACTTCAAATAGATGTATCTCGGGTTCTAGAAGAGCTAGAAACGTGATTTATTTTTCGAAAAACATTACTGAATCTCGGAATCTTATTGTGTGCCAAAGTACTGTATATTTGTAACTTTCAGGTCTCAAAAATGTTTTTGAATTTTTGAGTTTTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCCAAATCTTTCATCTTCTTTTTTCCTTCTCTTATCAATCACCTCTTTTTTAATTTTTCAAAAAACATTGAACCTGTTAACTACTTCCAATTATTCCTATAAAAGAGACCCCATTATTCCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAATAATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTTCTCCAAGATTTCCATCAAAACCTTTAAGCTCCGCCCACAATGTCAACCCTTACTATTCTTATCGCTATGGCAATGGTTTTGATGGTATCAGCGGGACCATACGGATACCGAAATTATGGATACAACAATGGCTACCGTAACCAGTATGCTACTCCAAACTATTACAATCGTGGATAT</canonical>
            <polymorphic>GTTTCTAGAATTTCAGATTTTTGAGAAAGTGTAAAATTCTATATTCATCGAAAAGTTTGAAAGTTCTAGCGCAATTTTGAGCCGAGATATGCTCACTTGAAAATTGGGAGGCTAGAGACGCCAGACAACGAGACACTCTAACTGTCTGCGTCTCTTCGAAACTTCAAATAGATGTATCTCGGGTTCTAGAAGAGCTAGAAACGTGATTTATTTTTCGAAAAACATTACTGAATCTCGGAATCTTATTGTGTGCCAAAGTACTGTATATTTGTAACTTTCAGGTCTCAAAAATGTTTTTGAATTTTTGAGTTTTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTRGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCCAAATCTTTCATCTTCTTTTTTCCTTCTCTTATCAATCACCTCTTTTTTAATTTTTCAAAAAACATTGAACCTGTTAACTACTTCCAATTATTCCTATAAAAGAGACCCCATTATTCCATTCCATTAAAAAGACAATAAATGATTTTGACCTACAAAGCCAAATAATAAGCTCCGCCCACTCGAACCTGAGACTTCAAAAAACCAAACACGTCATTCTATGGTATAAATAAGCCTCAGCTTCTCCAAGATTTCCATCAAAACCTTTAAGCTCCGCCCACAATGTCAACCCTTACTATTCTTATCGCTATGGCAATGGTTTTGATGGTATCAGCGGGACCATACGGATACCGAAATTATGGATACAACAATGGCTACCGTAACCAGTATGCTACTCCAAACTATTACAATCGTGGATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>494 167 119 74 61 46 9 9 8 8 5</canonical_bands>
                <polymorphic_bands>494 167 127 74 61 46 9 9 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTTGATTGTCGTAAAATAGACT</pcr_primer_p1>
		<pcr_primer_p2>GGAGTCCAAAATGGTACAAG</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>TTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTAGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCC</canonical_amplicon>
		<polymorphic_amplicon>TTGTTGATTGTCGTAAAATAGACTAAATTTCCTTCAAGTATGTTTAATAACTAGCTTCCTAGCTCACCTAGAAGCCGAGATACTGAGATTTGAAGTTTCGGAGGTGAGAGACGCAGACAACGAGACACTCTAACAGTCTGCGTCTCTTCGAAACTTCAAATGGCTGTATCTCGACTCTCAAGAAAGCTRGAATGCTAGTTTTTGCTGGAAATAAAATCAAAATTTGAGAATTTGAAATTTAAAATTTTCAAACTTGTACCATTTTGGACTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30700</snp_id>
        <super_contig>c005500930.Contig1</super_contig>
        <contig_pos>40116</contig_pos>
        <strand></strand>
        <context>cgcagacaac[C/G]agacactcyr</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAAC</left_flank>
        <right_flank>AGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCGTCTCTAGCCTCCCAAACTTTAAATCTTTATATCTCGGGTTCTAGATGAGCTAGACGTTGGGTTTTTTTAGAAATCTTTAAATACTGAAATTTCCATCAAAACTCTACATTTTGCAAAAAGAATGAGCTTTCTAGCTCAACTGGGTGCCGAGATACAGCGCTTTGAAGATTCAATGCCTGCGTCTCTCTTACAGCTGCGCGAGAGACGCATGGTGTCTCGTCGTTTGGCGTCTCTCGCCTTTTAAACTTCAAATGTCCCATATCTCGGCTCTCAGACAAGCTACAAAGCTCAAACTTTCACATAAATACATGATTTTCGAAAGATATTCTTAAACTAAATAGTTTTTCGAAAATCTAAAGTTTTGAAAAACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTCCAAATAAAATCAAAACTTCAAAACTCAAAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTGGCCCACA</canonical>
            <polymorphic>ATGCGTCTCTAGCCTCCCAAACTTTAAATCTTTATATCTCGGGTTCTAGATGAGCTAGACGTTGGGTTTTTTTAGAAATCTTTAAATACTGAAATTTCCATCAAAACTCTACATTTTGCAAAAAGAATGAGCTTTCTAGCTCAACTGGGTGCCGAGATACAGCGCTTTGAAGATTCAATGCCTGCGTCTCTCTTACAGCTGCGCGAGAGACGCATGGTGTCTCGTCGTTTGGCGTCTCTCGCCTTTTAAACTTCAAATGTCCCATATCTCGGCTCTCAGACAAGCTACAAAGCTCAAACTTTCACATAAATACATGATTTTCGAAAGATATTCTTAAACTAAATAGTTTTTCGAAAATCTAAAGTTTTGAAAAACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACSAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTCCAAATAAAATCAAAACTTCAAAACTCAAAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTGGCCCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAGATATCTTGGATTTCATCA</pcr_primer_p1>
		<pcr_primer_p2>TGAAGTTCAATTTCTAAAGTATTCA</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>AACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCA</canonical_amplicon>
		<polymorphic_amplicon>AACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACSAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30701</snp_id>
        <super_contig>c005500930.Contig1</super_contig>
        <contig_pos>40125</contig_pos>
        <strand></strand>
        <context>csagacactc[T/C]raytgtctgc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTC</left_flank>
        <right_flank>GATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGCCTCCCAAACTTTAAATCTTTATATCTCGGGTTCTAGATGAGCTAGACGTTGGGTTTTTTTAGAAATCTTTAAATACTGAAATTTCCATCAAAACTCTACATTTTGCAAAAAGAATGAGCTTTCTAGCTCAACTGGGTGCCGAGATACAGCGCTTTGAAGATTCAATGCCTGCGTCTCTCTTACAGCTGCGCGAGAGACGCATGGTGTCTCGTCGTTTGGCGTCTCTCGCCTTTTAAACTTCAAATGTCCCATATCTCGGCTCTCAGACAAGCTACAAAGCTCAAACTTTCACATAAATACATGATTTTCGAAAGATATTCTTAAACTAAATAGTTTTTCGAAAATCTAAAGTTTTGAAAAACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTCCAAATAAAATCAAAACTTCAAAACTCAAAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTGGCCCACATTGTGTGCC</canonical>
            <polymorphic>TAGCCTCCCAAACTTTAAATCTTTATATCTCGGGTTCTAGATGAGCTAGACGTTGGGTTTTTTTAGAAATCTTTAAATACTGAAATTTCCATCAAAACTCTACATTTTGCAAAAAGAATGAGCTTTCTAGCTCAACTGGGTGCCGAGATACAGCGCTTTGAAGATTCAATGCCTGCGTCTCTCTTACAGCTGCGCGAGAGACGCATGGTGTCTCGTCGTTTGGCGTCTCTCGCCTTTTAAACTTCAAATGTCCCATATCTCGGCTCTCAGACAAGCTACAAAGCTCAAACTTTCACATAAATACATGATTTTCGAAAGATATTCTTAAACTAAATAGTTTTTCGAAAATCTAAAGTTTTGAAAAACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCYGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTCCAAATAAAATCAAAACTTCAAAACTCAAAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTGGCCCACATTGTGTGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAGATATCTTGGATTTCATCA</pcr_primer_p1>
		<pcr_primer_p2>TGAAGTTCAATTTCTAAAGTATTCA</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>AACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCA</canonical_amplicon>
		<polymorphic_amplicon>AACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCYGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30702</snp_id>
        <super_contig>c005500930.Contig1</super_contig>
        <contig_pos>40126</contig_pos>
        <strand></strand>
        <context>sagacactcy[G/A]aytgtctgcg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCT</left_flank>
        <right_flank>ATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAG</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCCTCCCAAACTTTAAATCTTTATATCTCGGGTTCTAGATGAGCTAGACGTTGGGTTTTTTTAGAAATCTTTAAATACTGAAATTTCCATCAAAACTCTACATTTTGCAAAAAGAATGAGCTTTCTAGCTCAACTGGGTGCCGAGATACAGCGCTTTGAAGATTCAATGCCTGCGTCTCTCTTACAGCTGCGCGAGAGACGCATGGTGTCTCGTCGTTTGGCGTCTCTCGCCTTTTAAACTTCAAATGTCCCATATCTCGGCTCTCAGACAAGCTACAAAGCTCAAACTTTCACATAAATACATGATTTTCGAAAGATATTCTTAAACTAAATAGTTTTTCGAAAATCTAAAGTTTTGAAAAACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTCCAAATAAAATCAAAACTTCAAAACTCAAAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTGGCCCACATTGTGTGCCA</canonical>
            <polymorphic>AGCCTCCCAAACTTTAAATCTTTATATCTCGGGTTCTAGATGAGCTAGACGTTGGGTTTTTTTAGAAATCTTTAAATACTGAAATTTCCATCAAAACTCTACATTTTGCAAAAAGAATGAGCTTTCTAGCTCAACTGGGTGCCGAGATACAGCGCTTTGAAGATTCAATGCCTGCGTCTCTCTTACAGCTGCGCGAGAGACGCATGGTGTCTCGTCGTTTGGCGTCTCTCGCCTTTTAAACTTCAAATGTCCCATATCTCGGCTCTCAGACAAGCTACAAAGCTCAAACTTTCACATAAATACATGATTTTCGAAAGATATTCTTAAACTAAATAGTTTTTCGAAAATCTAAAGTTTTGAAAAACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTRATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTCCAAATAAAATCAAAACTTCAAAACTCAAAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTGGCCCACATTGTGTGCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>395 268 231 72 34</canonical_bands>
                <polymorphic_bands>395 303 268 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAGATATCTTGGATTTCATCA</pcr_primer_p1>
		<pcr_primer_p2>TGAAGTTCAATTTCTAAAGTATTCA</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>AACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCA</canonical_amplicon>
		<polymorphic_amplicon>AACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTRATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30703</snp_id>
        <super_contig>c005500930.Contig1</super_contig>
        <contig_pos>40128</contig_pos>
        <strand></strand>
        <context>gacactcyra[T/C]tgtctgcgtc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGA</left_flank>
        <right_flank>TGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCCCAAACTTTAAATCTTTATATCTCGGGTTCTAGATGAGCTAGACGTTGGGTTTTTTTAGAAATCTTTAAATACTGAAATTTCCATCAAAACTCTACATTTTGCAAAAAGAATGAGCTTTCTAGCTCAACTGGGTGCCGAGATACAGCGCTTTGAAGATTCAATGCCTGCGTCTCTCTTACAGCTGCGCGAGAGACGCATGGTGTCTCGTCGTTTGGCGTCTCTCGCCTTTTAAACTTCAAATGTCCCATATCTCGGCTCTCAGACAAGCTACAAAGCTCAAACTTTCACATAAATACATGATTTTCGAAAGATATTCTTAAACTAAATAGTTTTTCGAAAATCTAAAGTTTTGAAAAACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTCCAAATAAAATCAAAACTTCAAAACTCAAAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTGGCCCACATTGTGTGCCAAA</canonical>
            <polymorphic>CCTCCCAAACTTTAAATCTTTATATCTCGGGTTCTAGATGAGCTAGACGTTGGGTTTTTTTAGAAATCTTTAAATACTGAAATTTCCATCAAAACTCTACATTTTGCAAAAAGAATGAGCTTTCTAGCTCAACTGGGTGCCGAGATACAGCGCTTTGAAGATTCAATGCCTGCGTCTCTCTTACAGCTGCGCGAGAGACGCATGGTGTCTCGTCGTTTGGCGTCTCTCGCCTTTTAAACTTCAAATGTCCCATATCTCGGCTCTCAGACAAGCTACAAAGCTCAAACTTTCACATAAATACATGATTTTCGAAAGATATTCTTAAACTAAATAGTTTTTCGAAAATCTAAAGTTTTGAAAAACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGAYTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTCCAAATAAAATCAAAACTTCAAAACTCAAAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTGGCCCACATTGTGTGCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAGATATCTTGGATTTCATCA</pcr_primer_p1>
		<pcr_primer_p2>TGAAGTTCAATTTCTAAAGTATTCA</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>AACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCA</canonical_amplicon>
		<polymorphic_amplicon>AACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGAYTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30704</snp_id>
        <super_contig>c005500930.Contig1</super_contig>
        <contig_pos>40222</contig_pos>
        <strand>+</strand>
        <context>gaatttAACG[G/T]TTTTTTTCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACG</left_flank>
        <right_flank>TTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTACATTTTGCAAAAAGAATGAGCTTTCTAGCTCAACTGGGTGCCGAGATACAGCGCTTTGAAGATTCAATGCCTGCGTCTCTCTTACAGCTGCGCGAGAGACGCATGGTGTCTCGTCGTTTGGCGTCTCTCGCCTTTTAAACTTCAAATGTCCCATATCTCGGCTCTCAGACAAGCTACAAAGCTCAAACTTTCACATAAATACATGATTTTCGAAAGATATTCTTAAACTAAATAGTTTTTCGAAAATCTAAAGTTTTGAAAAACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTCCAAATAAAATCAAAACTTCAAAACTCAAAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTGGCCCACATTGTGTGCCAAAAACTGCTATTTTCGGATTATTTTTGGCATAAAAAATCTCGATAAACTTGATTTTTTGCTGATAAATAGCTCTGAAATTCCAAAAAAAAAAAAAA</canonical>
            <polymorphic>CTCTACATTTTGCAAAAAGAATGAGCTTTCTAGCTCAACTGGGTGCCGAGATACAGCGCTTTGAAGATTCAATGCCTGCGTCTCTCTTACAGCTGCGCGAGAGACGCATGGTGTCTCGTCGTTTGGCGTCTCTCGCCTTTTAAACTTCAAATGTCCCATATCTCGGCTCTCAGACAAGCTACAAAGCTCAAACTTTCACATAAATACATGATTTTCGAAAGATATTCTTAAACTAAATAGTTTTTCGAAAATCTAAAGTTTTGAAAAACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGKTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTCCAAATAAAATCAAAACTTCAAAACTCAAAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTGGCCCACATTGTGTGCCAAAAACTGCTATTTTCGGATTATTTTTGGCATAAAAAATCTCGATAAACTTGATTTTTTGCTGATAAATAGCTCTGAAATTCCAAAAAAAAAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGATTTCATCAAAATTGTACTT</pcr_primer_p1>
		<pcr_primer_p2>GAATTTTCCCCAACTATATGAAG</pcr_primer_p2>
		<pcr_amplicon_size>281</pcr_amplicon_size>
		<canonical_amplicon>TGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTC</canonical_amplicon>
		<polymorphic_amplicon>TGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGKTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30705</snp_id>
        <super_contig>c005500930.Contig1</super_contig>
        <contig_pos>40392</contig_pos>
        <strand>+</strand>
        <context>cgagatacag[A/C]gmtttgaagt</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAG</left_flank>
        <right_flank>GCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGACAAGCTACAAAGCTCAAACTTTCACATAAATACATGATTTTCGAAAGATATTCTTAAACTAAATAGTTTTTCGAAAATCTAAAGTTTTGAAAAACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTCCAAATAAAATCAAAACTTCAAAACTCAAAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTGGCCCACATTGTGTGCCAAAAACTGCTATTTTCGGATTATTTTTGGCATAAAAAATCTCGATAAACTTGATTTTTTGCTGATAAATAGCTCTGAAATTCCAAAAAAAAAAAAAAAAGACGAACTTGTTGTACAAAGTGTCGCGTAGACGAATGGAATCCATTTTTGTCTCGATTCGCTGGCCATATTATTCAACATCGTTCGACAAAGAAAACCGCCAATGAATTGAACGAGTCCGGCAATGGGAAGTTCCACAGTCTCTTGATAGAGACACTTTTGAGAGTGG</canonical>
            <polymorphic>CAGACAAGCTACAAAGCTCAAACTTTCACATAAATACATGATTTTCGAAAGATATTCTTAAACTAAATAGTTTTTCGAAAATCTAAAGTTTTGAAAAACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTCCAAATAAAATCAAAACTTCAAAACTCAAAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGMGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTGGCCCACATTGTGTGCCAAAAACTGCTATTTTCGGATTATTTTTGGCATAAAAAATCTCGATAAACTTGATTTTTTGCTGATAAATAGCTCTGAAATTCCAAAAAAAAAAAAAAAAGACGAACTTGTTGTACAAAGTGTCGCGTAGACGAATGGAATCCATTTTTGTCTCGATTCGCTGGCCATATTATTCAACATCGTTCGACAAAGAAAACCGCCAATGAATTGAACGAGTCCGGCAATGGGAAGTTCCACAGTCTCTTGATAGAGACACTTTTGAGAGTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCGCT</site>
                <isoschizomers>
                    <enzyme>AfeI</enzyme>
                    <enzyme>Aor51HI</enzyme>
                    <enzyme>Eco47III</enzyme>
                    <enzyme>FunI</enzyme>
                </isoschizomers>
                <canonical_bands>500 312 188</canonical_bands>
                <polymorphic_bands>812 188</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>499 312 189</canonical_bands>
                <polymorphic_bands>811 189</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>498 312 190</canonical_bands>
                <polymorphic_bands>810 190</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACCAATTTAAAACCAGACT</pcr_primer_p1>
		<pcr_primer_p2>GCTAGAGATTGGAAGATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>281</pcr_amplicon_size>
		<canonical_amplicon>AAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGMGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30706</snp_id>
        <super_contig>c005500930.Contig1</super_contig>
        <contig_pos>40394</contig_pos>
        <strand>+</strand>
        <context>agatacagmg[A/C]tttgaagttt</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCG</left_flank>
        <right_flank>TTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACAAGCTACAAAGCTCAAACTTTCACATAAATACATGATTTTCGAAAGATATTCTTAAACTAAATAGTTTTTCGAAAATCTAAAGTTTTGAAAAACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTCCAAATAAAATCAAAACTTCAAAACTCAAAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTGGCCCACATTGTGTGCCAAAAACTGCTATTTTCGGATTATTTTTGGCATAAAAAATCTCGATAAACTTGATTTTTTGCTGATAAATAGCTCTGAAATTCCAAAAAAAAAAAAAAAAGACGAACTTGTTGTACAAAGTGTCGCGTAGACGAATGGAATCCATTTTTGTCTCGATTCGCTGGCCATATTATTCAACATCGTTCGACAAAGAAAACCGCCAATGAATTGAACGAGTCCGGCAATGGGAAGTTCCACAGTCTCTTGATAGAGACACTTTTGAGAGTGGAC</canonical>
            <polymorphic>GACAAGCTACAAAGCTCAAACTTTCACATAAATACATGATTTTCGAAAGATATTCTTAAACTAAATAGTTTTTCGAAAATCTAAAGTTTTGAAAAACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGMTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTCCAAATAAAATCAAAACTTCAAAACTCAAAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTGGCCCACATTGTGTGCCAAAAACTGCTATTTTCGGATTATTTTTGGCATAAAAAATCTCGATAAACTTGATTTTTTGCTGATAAATAGCTCTGAAATTCCAAAAAAAAAAAAAAAAGACGAACTTGTTGTACAAAGTGTCGCGTAGACGAATGGAATCCATTTTTGTCTCGATTCGCTGGCCATATTATTCAACATCGTTCGACAAAGAAAACCGCCAATGAATTGAACGAGTCCGGCAATGGGAAGTTCCACAGTCTCTTGATAGAGACACTTTTGAGAGTGGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCGCT</site>
                <isoschizomers>
                    <enzyme>AfeI</enzyme>
                    <enzyme>Aor51HI</enzyme>
                    <enzyme>Eco47III</enzyme>
                    <enzyme>FunI</enzyme>
                </isoschizomers>
                <canonical_bands>502 312 186</canonical_bands>
                <polymorphic_bands>502 498</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 312 187</canonical_bands>
                <polymorphic_bands>501 499</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>500 312 188</canonical_bands>
                <polymorphic_bands>500 500</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACCAATTTAAAACCAGACT</pcr_primer_p1>
		<pcr_primer_p2>GCTAGAGATTGGAAGATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>281</pcr_amplicon_size>
		<canonical_amplicon>AAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30707</snp_id>
        <super_contig>c005500930.Contig1</super_contig>
        <contig_pos>40405</contig_pos>
        <strand>+</strand>
        <context>tttgaagttt[C/T]graggykaga</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTT</left_flank>
        <right_flank>GAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCTCAAACTTTCACATAAATACATGATTTTCGAAAGATATTCTTAAACTAAATAGTTTTTCGAAAATCTAAAGTTTTGAAAAACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTCCAAATAAAATCAAAACTTCAAAACTCAAAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTGGCCCACATTGTGTGCCAAAAACTGCTATTTTCGGATTATTTTTGGCATAAAAAATCTCGATAAACTTGATTTTTTGCTGATAAATAGCTCTGAAATTCCAAAAAAAAAAAAAAAAGACGAACTTGTTGTACAAAGTGTCGCGTAGACGAATGGAATCCATTTTTGTCTCGATTCGCTGGCCATATTATTCAACATCGTTCGACAAAGAAAACCGCCAATGAATTGAACGAGTCCGGCAATGGGAAGTTCCACAGTCTCTTGATAGAGACACTTTTGAGAGTGGACCTGAAAAAAAA</canonical>
            <polymorphic>AAGCTCAAACTTTCACATAAATACATGATTTTCGAAAGATATTCTTAAACTAAATAGTTTTTCGAAAATCTAAAGTTTTGAAAAACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTCCAAATAAAATCAAAACTTCAAAACTCAAAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTYGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTGGCCCACATTGTGTGCCAAAAACTGCTATTTTCGGATTATTTTTGGCATAAAAAATCTCGATAAACTTGATTTTTTGCTGATAAATAGCTCTGAAATTCCAAAAAAAAAAAAAAAAGACGAACTTGTTGTACAAAGTGTCGCGTAGACGAATGGAATCCATTTTTGTCTCGATTCGCTGGCCATATTATTCAACATCGTTCGACAAAGAAAACCGCCAATGAATTGAACGAGTCCGGCAATGGGAAGTTCCACAGTCTCTTGATAGAGACACTTTTGAGAGTGGACCTGAAAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACCAATTTAAAACCAGACT</pcr_primer_p1>
		<pcr_primer_p2>GCTAGAGATTGGAAGATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>281</pcr_amplicon_size>
		<canonical_amplicon>AAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTYGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30708</snp_id>
        <super_contig>c005500930.Contig1</super_contig>
        <contig_pos>40407</contig_pos>
        <strand>+</strand>
        <context>tgaagtttyg[A/G]aggykagaga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTG</left_flank>
        <right_flank>AGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCAAACTTTCACATAAATACATGATTTTCGAAAGATATTCTTAAACTAAATAGTTTTTCGAAAATCTAAAGTTTTGAAAAACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTCCAAATAAAATCAAAACTTCAAAACTCAAAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTGGCCCACATTGTGTGCCAAAAACTGCTATTTTCGGATTATTTTTGGCATAAAAAATCTCGATAAACTTGATTTTTTGCTGATAAATAGCTCTGAAATTCCAAAAAAAAAAAAAAAAGACGAACTTGTTGTACAAAGTGTCGCGTAGACGAATGGAATCCATTTTTGTCTCGATTCGCTGGCCATATTATTCAACATCGTTCGACAAAGAAAACCGCCAATGAATTGAACGAGTCCGGCAATGGGAAGTTCCACAGTCTCTTGATAGAGACACTTTTGAGAGTGGACCTGAAAAAAAATG</canonical>
            <polymorphic>GCTCAAACTTTCACATAAATACATGATTTTCGAAAGATATTCTTAAACTAAATAGTTTTTCGAAAATCTAAAGTTTTGAAAAACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTCCAAATAAAATCAAAACTTCAAAACTCAAAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGRAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTGGCCCACATTGTGTGCCAAAAACTGCTATTTTCGGATTATTTTTGGCATAAAAAATCTCGATAAACTTGATTTTTTGCTGATAAATAGCTCTGAAATTCCAAAAAAAAAAAAAAAAGACGAACTTGTTGTACAAAGTGTCGCGTAGACGAATGGAATCCATTTTTGTCTCGATTCGCTGGCCATATTATTCAACATCGTTCGACAAAGAAAACCGCCAATGAATTGAACGAGTCCGGCAATGGGAAGTTCCACAGTCTCTTGATAGAGACACTTTTGAGAGTGGACCTGAAAAAAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACCAATTTAAAACCAGACT</pcr_primer_p1>
		<pcr_primer_p2>GCTAGAGATTGGAAGATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>281</pcr_amplicon_size>
		<canonical_amplicon>AAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGRAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30709</snp_id>
        <super_contig>c005500930.Contig1</super_contig>
        <contig_pos>40411</contig_pos>
        <strand>+</strand>
        <context>gtttygragg[C/T]kagagacgca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGG</left_flank>
        <right_flank>TAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTTTCACATAAATACATGATTTTCGAAAGATATTCTTAAACTAAATAGTTTTTCGAAAATCTAAAGTTTTGAAAAACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTCCAAATAAAATCAAAACTTCAAAACTCAAAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTGGCCCACATTGTGTGCCAAAAACTGCTATTTTCGGATTATTTTTGGCATAAAAAATCTCGATAAACTTGATTTTTTGCTGATAAATAGCTCTGAAATTCCAAAAAAAAAAAAAAAAGACGAACTTGTTGTACAAAGTGTCGCGTAGACGAATGGAATCCATTTTTGTCTCGATTCGCTGGCCATATTATTCAACATCGTTCGACAAAGAAAACCGCCAATGAATTGAACGAGTCCGGCAATGGGAAGTTCCACAGTCTCTTGATAGAGACACTTTTGAGAGTGGACCTGAAAAAAAATGATTT</canonical>
            <polymorphic>AAACTTTCACATAAATACATGATTTTCGAAAGATATTCTTAAACTAAATAGTTTTTCGAAAATCTAAAGTTTTGAAAAACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTCCAAATAAAATCAAAACTTCAAAACTCAAAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGYTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTGGCCCACATTGTGTGCCAAAAACTGCTATTTTCGGATTATTTTTGGCATAAAAAATCTCGATAAACTTGATTTTTTGCTGATAAATAGCTCTGAAATTCCAAAAAAAAAAAAAAAAGACGAACTTGTTGTACAAAGTGTCGCGTAGACGAATGGAATCCATTTTTGTCTCGATTCGCTGGCCATATTATTCAACATCGTTCGACAAAGAAAACCGCCAATGAATTGAACGAGTCCGGCAATGGGAAGTTCCACAGTCTCTTGATAGAGACACTTTTGAGAGTGGACCTGAAAAAAAATGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>310 188 185 92 72 72 46 17 9 9</canonical_bands>
                <polymorphic_bands>310 188 185 118 92 72 17 9 9</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>495 312 193</canonical_bands>
                <polymorphic_bands>807 193</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>189 187 123 96 92 86 69 58 30 23 23 12 12</canonical_bands>
                <polymorphic_bands>189 187 123 96 92 88 86 69 23 23 12 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACCAATTTAAAACCAGACT</pcr_primer_p1>
		<pcr_primer_p2>GCTAGAGATTGGAAGATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>281</pcr_amplicon_size>
		<canonical_amplicon>AAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGYTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30710</snp_id>
        <super_contig>c005500930.Contig1</super_contig>
        <contig_pos>40412</contig_pos>
        <strand>+</strand>
        <context>tttygraggy[G/T]agagacgcag</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGC</left_flank>
        <right_flank>AGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTTTCACATAAATACATGATTTTCGAAAGATATTCTTAAACTAAATAGTTTTTCGAAAATCTAAAGTTTTGAAAAACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTCCAAATAAAATCAAAACTTCAAAACTCAAAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTGGCCCACATTGTGTGCCAAAAACTGCTATTTTCGGATTATTTTTGGCATAAAAAATCTCGATAAACTTGATTTTTTGCTGATAAATAGCTCTGAAATTCCAAAAAAAAAAAAAAAAGACGAACTTGTTGTACAAAGTGTCGCGTAGACGAATGGAATCCATTTTTGTCTCGATTCGCTGGCCATATTATTCAACATCGTTCGACAAAGAAAACCGCCAATGAATTGAACGAGTCCGGCAATGGGAAGTTCCACAGTCTCTTGATAGAGACACTTTTGAGAGTGGACCTGAAAAAAAATGATTTT</canonical>
            <polymorphic>AACTTTCACATAAATACATGATTTTCGAAAGATATTCTTAAACTAAATAGTTTTTCGAAAATCTAAAGTTTTGAAAAACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTCCAAATAAAATCAAAACTTCAAAACTCAAAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCKAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTGGCCCACATTGTGTGCCAAAAACTGCTATTTTCGGATTATTTTTGGCATAAAAAATCTCGATAAACTTGATTTTTTGCTGATAAATAGCTCTGAAATTCCAAAAAAAAAAAAAAAAGACGAACTTGTTGTACAAAGTGTCGCGTAGACGAATGGAATCCATTTTTGTCTCGATTCGCTGGCCATATTATTCAACATCGTTCGACAAAGAAAACCGCCAATGAATTGAACGAGTCCGGCAATGGGAAGTTCCACAGTCTCTTGATAGAGACACTTTTGAGAGTGGACCTGAAAAAAAATGATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>311 187 185 92 72 72 46 17 9 9</canonical_bands>
                <polymorphic_bands>311 187 185 118 92 72 17 9 9</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>189 186 124 96 92 86 69 58 30 23 23 12 12</canonical_bands>
                <polymorphic_bands>189 186 124 96 92 88 86 69 23 23 12 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACCAATTTAAAACCAGACT</pcr_primer_p1>
		<pcr_primer_p2>GCTAGAGATTGGAAGATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>281</pcr_amplicon_size>
		<canonical_amplicon>AAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCKAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30711</snp_id>
        <super_contig>c005500930.Contig1</super_contig>
        <contig_pos>40432</contig_pos>
        <strand></strand>
        <context>gacaacgaga[A/C]actctaactg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGA</left_flank>
        <right_flank>ACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTCGAAAGATATTCTTAAACTAAATAGTTTTTCGAAAATCTAAAGTTTTGAAAAACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTCCAAATAAAATCAAAACTTCAAAACTCAAAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTGGCCCACATTGTGTGCCAAAAACTGCTATTTTCGGATTATTTTTGGCATAAAAAATCTCGATAAACTTGATTTTTTGCTGATAAATAGCTCTGAAATTCCAAAAAAAAAAAAAAAAGACGAACTTGTTGTACAAAGTGTCGCGTAGACGAATGGAATCCATTTTTGTCTCGATTCGCTGGCCATATTATTCAACATCGTTCGACAAAGAAAACCGCCAATGAATTGAACGAGTCCGGCAATGGGAAGTTCCACAGTCTCTTGATAGAGACACTTTTGAGAGTGGACCTGAAAAAAAATGATTTTTAAAAATTAGTTTTTTTTAG</canonical>
            <polymorphic>ATTTTCGAAAGATATTCTTAAACTAAATAGTTTTTCGAAAATCTAAAGTTTTGAAAAACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTCCAAATAAAATCAAAACTTCAAAACTCAAAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAMACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTGGCCCACATTGTGTGCCAAAAACTGCTATTTTCGGATTATTTTTGGCATAAAAAATCTCGATAAACTTGATTTTTTGCTGATAAATAGCTCTGAAATTCCAAAAAAAAAAAAAAAAGACGAACTTGTTGTACAAAGTGTCGCGTAGACGAATGGAATCCATTTTTGTCTCGATTCGCTGGCCATATTATTCAACATCGTTCGACAAAGAAAACCGCCAATGAATTGAACGAGTCCGGCAATGGGAAGTTCCACAGTCTCTTGATAGAGACACTTTTGAGAGTGGACCTGAAAAAAAATGATTTTTAAAAATTAGTTTTTTTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACCAATTTAAAACCAGACT</pcr_primer_p1>
		<pcr_primer_p2>GCTAGAGATTGGAAGATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>281</pcr_amplicon_size>
		<canonical_amplicon>AAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAMACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30712</snp_id>
        <super_contig>c005500930.Contig1</super_contig>
        <contig_pos>40446</contig_pos>
        <strand></strand>
        <context>ctaactgtct[G/T]cgtctctcaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCT</left_flank>
        <right_flank>CGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTAAACTAAATAGTTTTTCGAAAATCTAAAGTTTTGAAAAACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTCCAAATAAAATCAAAACTTCAAAACTCAAAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTGGCCCACATTGTGTGCCAAAAACTGCTATTTTCGGATTATTTTTGGCATAAAAAATCTCGATAAACTTGATTTTTTGCTGATAAATAGCTCTGAAATTCCAAAAAAAAAAAAAAAAGACGAACTTGTTGTACAAAGTGTCGCGTAGACGAATGGAATCCATTTTTGTCTCGATTCGCTGGCCATATTATTCAACATCGTTCGACAAAGAAAACCGCCAATGAATTGAACGAGTCCGGCAATGGGAAGTTCCACAGTCTCTTGATAGAGACACTTTTGAGAGTGGACCTGAAAAAAAATGATTTTTAAAAATTAGTTTTTTTTAGAGTTGTAAATTTGA</canonical>
            <polymorphic>TTCTTAAACTAAATAGTTTTTCGAAAATCTAAAGTTTTGAAAAACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTCCAAATAAAATCAAAACTTCAAAACTCAAAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTKCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTGGCCCACATTGTGTGCCAAAAACTGCTATTTTCGGATTATTTTTGGCATAAAAAATCTCGATAAACTTGATTTTTTGCTGATAAATAGCTCTGAAATTCCAAAAAAAAAAAAAAAAGACGAACTTGTTGTACAAAGTGTCGCGTAGACGAATGGAATCCATTTTTGTCTCGATTCGCTGGCCATATTATTCAACATCGTTCGACAAAGAAAACCGCCAATGAATTGAACGAGTCCGGCAATGGGAAGTTCCACAGTCTCTTGATAGAGACACTTTTGAGAGTGGACCTGAAAAAAAATGATTTTTAAAAATTAGTTTTTTTTAGAGTTGTAAATTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACCAATTTAAAACCAGACT</pcr_primer_p1>
		<pcr_primer_p2>GCTAGAGATTGGAAGATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>281</pcr_amplicon_size>
		<canonical_amplicon>AAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTKCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30713</snp_id>
        <super_contig>c005500930.Contig1</super_contig>
        <contig_pos>40463</contig_pos>
        <strand></strand>
        <context>tcaaaacttt[A/T]aatggcttta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTT</left_flank>
        <right_flank>AATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCGAAAATCTAAAGTTTTGAAAAACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTCCAAATAAAATCAAAACTTCAAAACTCAAAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTGGCCCACATTGTGTGCCAAAAACTGCTATTTTCGGATTATTTTTGGCATAAAAAATCTCGATAAACTTGATTTTTTGCTGATAAATAGCTCTGAAATTCCAAAAAAAAAAAAAAAAGACGAACTTGTTGTACAAAGTGTCGCGTAGACGAATGGAATCCATTTTTGTCTCGATTCGCTGGCCATATTATTCAACATCGTTCGACAAAGAAAACCGCCAATGAATTGAACGAGTCCGGCAATGGGAAGTTCCACAGTCTCTTGATAGAGACACTTTTGAGAGTGGACCTGAAAAAAAATGATTTTTAAAAATTAGTTTTTTTTAGAGTTGTAAATTTGAAAATTCAACTTTTAAAA</canonical>
            <polymorphic>TTTTCGAAAATCTAAAGTTTTGAAAAACAGATATCTTGGATTTCATCAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTCCAAATAAAATCAAAACTTCAAAACTCAAAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTWAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTGGCCCACATTGTGTGCCAAAAACTGCTATTTTCGGATTATTTTTGGCATAAAAAATCTCGATAAACTTGATTTTTTGCTGATAAATAGCTCTGAAATTCCAAAAAAAAAAAAAAAAGACGAACTTGTTGTACAAAGTGTCGCGTAGACGAATGGAATCCATTTTTGTCTCGATTCGCTGGCCATATTATTCAACATCGTTCGACAAAGAAAACCGCCAATGAATTGAACGAGTCCGGCAATGGGAAGTTCCACAGTCTCTTGATAGAGACACTTTTGAGAGTGGACCTGAAAAAAAATGATTTTTAAAAATTAGTTTTTTTTAGAGTTGTAAATTTGAAAATTCAACTTTTAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>369 356 143 82 46 4</canonical_bands>
                <polymorphic_bands>369 356 225 46 4</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>369 178 143 102 82 75 46 5</canonical_bands>
                <polymorphic_bands>369 225 178 102 75 46 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACCAATTTAAAACCAGACT</pcr_primer_p1>
		<pcr_primer_p2>GCTAGAGATTGGAAGATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>281</pcr_amplicon_size>
		<canonical_amplicon>AAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTWAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30714</snp_id>
        <super_contig>c005500930.Contig1</super_contig>
        <contig_pos>40509</contig_pos>
        <strand></strand>
        <context>aatgattctt[G/C]gtgggatttg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTT</left_flank>
        <right_flank>GTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTCCAAATAAAATCAAAACTTCAAAACTCAAAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTGGCCCACATTGTGTGCCAAAAACTGCTATTTTCGGATTATTTTTGGCATAAAAAATCTCGATAAACTTGATTTTTTGCTGATAAATAGCTCTGAAATTCCAAAAAAAAAAAAAAAAGACGAACTTGTTGTACAAAGTGTCGCGTAGACGAATGGAATCCATTTTTGTCTCGATTCGCTGGCCATATTATTCAACATCGTTCGACAAAGAAAACCGCCAATGAATTGAACGAGTCCGGCAATGGGAAGTTCCACAGTCTCTTGATAGAGACACTTTTGAGAGTGGACCTGAAAAAAAATGATTTTTAAAAATTAGTTTTTTTTAGAGTTGTAAATTTGAAAATTCAACTTTTAAAAAACTTTTTTTGGATGTTTTCTGAATTTTTGAAATTCTAGCTTTTGG</canonical>
            <polymorphic>CAAAATTGTACTTTGGGCATGTACTTTGTTAAAATAACAAATTCGTTGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTCCAAATAAAATCAAAACTTCAAAACTCAAAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTSGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTGGCCCACATTGTGTGCCAAAAACTGCTATTTTCGGATTATTTTTGGCATAAAAAATCTCGATAAACTTGATTTTTTGCTGATAAATAGCTCTGAAATTCCAAAAAAAAAAAAAAAAGACGAACTTGTTGTACAAAGTGTCGCGTAGACGAATGGAATCCATTTTTGTCTCGATTCGCTGGCCATATTATTCAACATCGTTCGACAAAGAAAACCGCCAATGAATTGAACGAGTCCGGCAATGGGAAGTTCCACAGTCTCTTGATAGAGACACTTTTGAGAGTGGACCTGAAAAAAAATGATTTTTAAAAATTAGTTTTTTTTAGAGTTGTAAATTTGAAAATTCAACTTTTAAAAAACTTTTTTTGGATGTTTTCTGAATTTTTGAAATTCTAGCTTTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACCAATTTAAAACCAGACT</pcr_primer_p1>
		<pcr_primer_p2>GCTAGAGATTGGAAGATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>281</pcr_amplicon_size>
		<canonical_amplicon>AAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTSGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30715</snp_id>
        <super_contig>c005500930.Contig1</super_contig>
        <contig_pos>40555</contig_pos>
        <strand></strand>
        <context>AAAAATAGTT[T/C]GAAAACTACT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTT</left_flank>
        <right_flank>GAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTCCAAATAAAATCAAAACTTCAAAACTCAAAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTGGCCCACATTGTGTGCCAAAAACTGCTATTTTCGGATTATTTTTGGCATAAAAAATCTCGATAAACTTGATTTTTTGCTGATAAATAGCTCTGAAATTCCAAAAAAAAAAAAAAAAGACGAACTTGTTGTACAAAGTGTCGCGTAGACGAATGGAATCCATTTTTGTCTCGATTCGCTGGCCATATTATTCAACATCGTTCGACAAAGAAAACCGCCAATGAATTGAACGAGTCCGGCAATGGGAAGTTCCACAGTCTCTTGATAGAGACACTTTTGAGAGTGGACCTGAAAAAAAATGATTTTTAAAAATTAGTTTTTTTTAGAGTTGTAAATTTGAAAATTCAACTTTTAAAAAACTTTTTTTGGATGTTTTCTGAATTTTTGAAATTCTAGCTTTTGGTTTTTTTTGGACACTTTTGAAAAACTTATATCTGTGAATTAAAAAA</canonical>
            <polymorphic>TGATTTCTGTGAGCAGAGATACAGCGCTTTGAAGTTTCGAAGGCTAGAGACGCAGACAACCAGACACTCTGATTGTCTGCGTCTCTCAAAACTTCAAATGCCTTCATCTCGGCTTCTAGAGAAGCTAGAAAATTGATTTTCGGACCAGTTTGTAGGGAATTTAACGTTTTTTTTCTGAAAATTGAATACTTTAGAAATTGAACTTCATATAGTTGGGGAAAATTCCAAATAAAATCAAAACTTCAAAACTCAAAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTYGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTGGCCCACATTGTGTGCCAAAAACTGCTATTTTCGGATTATTTTTGGCATAAAAAATCTCGATAAACTTGATTTTTTGCTGATAAATAGCTCTGAAATTCCAAAAAAAAAAAAAAAAGACGAACTTGTTGTACAAAGTGTCGCGTAGACGAATGGAATCCATTTTTGTCTCGATTCGCTGGCCATATTATTCAACATCGTTCGACAAAGAAAACCGCCAATGAATTGAACGAGTCCGGCAATGGGAAGTTCCACAGTCTCTTGATAGAGACACTTTTGAGAGTGGACCTGAAAAAAAATGATTTTTAAAAATTAGTTTTTTTTAGAGTTGTAAATTTGAAAATTCAACTTTTAAAAAACTTTTTTTGGATGTTTTCTGAATTTTTGAAATTCTAGCTTTTGGTTTTTTTTGGACACTTTTGAAAAACTTATATCTGTGAATTAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACCAATTTAAAACCAGACT</pcr_primer_p1>
		<pcr_primer_p2>CAATTCTAGGTTCCCATACG</pcr_primer_p2>
		<pcr_amplicon_size>302</pcr_amplicon_size>
		<canonical_amplicon>AAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTTGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTG</canonical_amplicon>
		<polymorphic_amplicon>AAAAACCAATTTAAAACCAGACTGAACTTCCTTCAATTATGTTGAAGATACTTCTTTCTAGCTCGTTTGAGAGCCGAGATACAGCGCTTTGAAGTTTTGAAGGCTAGAGACGCAGACAACGAGAAACTCTAACTGTCTGCGTCTCTCAAAACTTTAAATGGCTTTATCTCGGGTTCTAGACAAGCTAGAAGAATGATTCTTGGTGGGATTTGTAGGAAATTTCGAATGGTATTTTTTAAAAATAGTTYGAAAACTACTTTTTTGATCTTCCAATCTCTAGCTCGTATGGGAACCTAGAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30716</snp_id>
        <super_contig>c005500930.Contig1</super_contig>
        <contig_pos>54125</contig_pos>
        <strand>+</strand>
        <context>ttttttattg[A/T]ttcaagtcta</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCTTGGAGTATATAGGTATTTTATGGCTTTTGACTCGAATTTTTTATTG</left_flank>
        <right_flank>TTCAAGTCTAAAATCGATTTCTAAACCAGCGTTTGAAGCAAAAAATTAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTAGAACAAAAATTTTTAGTAGGATTTAGAGGAAATTCGATGTATTTTTCGATTTCATCGCAAAATTGGAAAAATTGGAGAAATTGCAATTTTAAAAGTTTTGAAATTTTGTAATAATGATCTCACCCAATTCCGAACTAAATCCTAAAAGTAGCAGCATGAAAAAAAACAAAAAGCTCCATAACCAAGGAATCGGCATCTGATTCATTGCATCTGGATATGCTACAAATGCCAGTGTGGGTCCACTCGCCACAACATCAGACACCTGCACCCCGCGTTGTTTCGCCAAGAAGCCCAGAGTTGAAAAAACCGCGCCTCCACCAATCAAGGCGGCCACCGCCACTGCCACGGGCTTGTAACAGCCAGCAGCGCCGCCAAGCGCCCGTGTCCGGCTGGCCCAGTGGGTAAGAGGCCTGACTCTGGATCAGAAGGAGCAAAAGTTCGAATCCTCTTGGAGTATATAGGTATTTTATGGCTTTTGACTCGAATTTTTTATTGTTTCAAGTCTAAAATCGATTTCTAAACCAGCGTTTGAAGCAAAAAATTAGATTTTCAAGCTCAAAATTGCACATACCCTATAAAAATTATGTCCTATATCAATTAAGGGGTAGGTTGGGAAAATTAGCTGTTTGAACCGGAAACAGAGTTTAAATGACTTTAAAAAAGAATTTCGCCTCGAAAACTTCAAAAAACTGGGTTCCAGTGCGATTTTTGACTTGAAACAATAAAAAGTTCGGGTCAAACACCCTAAAAAACCTATATACCCCAAGAGGATTCGAACTTTTGCTTCTTCTGATCCAAAGTCAGACGTCTTACCCCCTAGGCCAGCCGGACGCGGGCGCTTTGCCGCGCTGCTGGCTGTTATAAGCCCTTGATAGTGGTGGTAGCAGCCGGCGCGCGGTTATAAGGGCAATGGTGGCCGCCGCCCGCTCCTGCACACTTGGCGCAATGGGCAAAATGTTTGACTTTGGAGCAGAAGAGCCACAAGTTCGAATCCTG</canonical>
            <polymorphic>GCTAGAACAAAAATTTTTAGTAGGATTTAGAGGAAATTCGATGTATTTTTCGATTTCATCGCAAAATTGGAAAAATTGGAGAAATTGCAATTTTAAAAGTTTTGAAATTTTGTAATAATGATCTCACCCAATTCCGAACTAAATCCTAAAAGTAGCAGCATGAAAAAAAACAAAAAGCTCCATAACCAAGGAATCGGCATCTGATTCATTGCATCTGGATATGCTACAAATGCCAGTGTGGGTCCACTCGCCACAACATCAGACACCTGCACCCCGCGTTGTTTCGCCAAGAAGCCCAGAGTTGAAAAAACCGCGCCTCCACCAATCAAGGCGGCCACCGCCACTGCCACGGGCTTGTAACAGCCAGCAGCGCCGCCAAGCGCCCGTGTCCGGCTGGCCCAGTGGGTAAGAGGCCTGACTCTGGATCAGAAGGAGCAAAAGTTCGAATCCTCTTGGAGTATATAGGTATTTTATGGCTTTTGACTCGAATTTTTTATTGWTTCAAGTCTAAAATCGATTTCTAAACCAGCGTTTGAAGCAAAAAATTAGATTTTCAAGCTCAAAATTGCACATACCCTATAAAAATTATGTCCTATATCAATTAAGGGGTAGGTTGGGAAAATTAGCTGTTTGAACCGGAAACAGAGTTTAAATGACTTTAAAAAAGAATTTCGCCTCGAAAACTTCAAAAAACTGGGTTCCAGTGCGATTTTTGACTTGAAACAATAAAAAGTTCGGGTCAAACACCCTAAAAAACCTATATACCCCAAGAGGATTCGAACTTTTGCTTCTTCTGATCCAAAGTCAGACGTCTTACCCCCTAGGCCAGCCGGACGCGGGCGCTTTGCCGCGCTGCTGGCTGTTATAAGCCCTTGATAGTGGTGGTAGCAGCCGGCGCGCGGTTATAAGGGCAATGGTGGCCGCCGCCCGCTCCTGCACACTTGGCGCAATGGGCAAAATGTTTGACTTTGGAGCAGAAGAGCCACAAGTTCGAATCCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATGCTACAAATGCCAGTGT</pcr_primer_p1>
		<pcr_primer_p2>CAATTTTGAGCTTGAAAATCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>350</pcr_amplicon_size>
		<canonical_amplicon>ATATGCTACAAATGCCAGTGTGGGTCCACTCGCCACAACATCAGACACCTGCACCCCGCGTTGTTTCGCCAAGAAGCCCAGAGTTGAAAAAACCGCGCCTCCACCAATCAAGGCGGCCACCGCCACTGCCACGGGCTTGTAACAGCCAGCAGCGCCGCCAAGCGCCCGTGTCCGGCTGGCCCAGTGGGTAAGAGGCCTGACTCTGGATCAGAAGGAGCAAAAGTTCGAATCCTCTTGGAGTATATAGGTATTTTATGGCTTTTGACTCGAATTTTTTATTGTTTCAAGTCTAAAATCGATTTCTAAACCAGCGTTTGAAGCAAAAAATTAGATTTTCAAGCTCAAAATTG</canonical_amplicon>
		<polymorphic_amplicon>ATATGCTACAAATGCCAGTGTGGGTCCACTCGCCACAACATCAGACACCTGCACCCCGCGTTGTTTCGCCAAGAAGCCCAGAGTTGAAAAAACCGCGCCTCCACCAATCAAGGCGGCCACCGCCACTGCCACGGGCTTGTAACAGCCAGCAGCGCCGCCAAGCGCCCGTGTCCGGCTGGCCCAGTGGGTAAGAGGCCTGACTCTGGATCAGAAGGAGCAAAAGTTCGAATCCTCTTGGAGTATATAGGTATTTTATGGCTTTTGACTCGAATTTTTTATTGWTTCAAGTCTAAAATCGATTTCTAAACCAGCGTTTGAAGCAAAAAATTAGATTTTCAAGCTCAAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30717</snp_id>
        <super_contig>c005500930.Contig1</super_contig>
        <contig_pos>54144</contig_pos>
        <strand>+</strand>
        <context>taaaatcgat[C/T]tctaaaccag</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTATGGCTTTTGACTCGAATTTTTTATTGTTTCAAGTCTAAAATCGAT</left_flank>
        <right_flank>TCTAAACCAGCGTTTGAAGCAAAAAATTAGATTTTCAAGCTCAAAATTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAGGATTTAGAGGAAATTCGATGTATTTTTCGATTTCATCGCAAAATTGGAAAAATTGGAGAAATTGCAATTTTAAAAGTTTTGAAATTTTGTAATAATGATCTCACCCAATTCCGAACTAAATCCTAAAAGTAGCAGCATGAAAAAAAACAAAAAGCTCCATAACCAAGGAATCGGCATCTGATTCATTGCATCTGGATATGCTACAAATGCCAGTGTGGGTCCACTCGCCACAACATCAGACACCTGCACCCCGCGTTGTTTCGCCAAGAAGCCCAGAGTTGAAAAAACCGCGCCTCCACCAATCAAGGCGGCCACCGCCACTGCCACGGGCTTGTAACAGCCAGCAGCGCCGCCAAGCGCCCGTGTCCGGCTGGCCCAGTGGGTAAGAGGCCTGACTCTGGATCAGAAGGAGCAAAAGTTCGAATCCTCTTGGAGTATATAGGTATTTTATGGCTTTTGACTCGAATTTTTTATTGTTTCAAGTCTAAAATCGATTTCTAAACCAGCGTTTGAAGCAAAAAATTAGATTTTCAAGCTCAAAATTGCACATACCCTATAAAAATTATGTCCTATATCAATTAAGGGGTAGGTTGGGAAAATTAGCTGTTTGAACCGGAAACAGAGTTTAAATGACTTTAAAAAAGAATTTCGCCTCGAAAACTTCAAAAAACTGGGTTCCAGTGCGATTTTTGACTTGAAACAATAAAAAGTTCGGGTCAAACACCCTAAAAAACCTATATACCCCAAGAGGATTCGAACTTTTGCTTCTTCTGATCCAAAGTCAGACGTCTTACCCCCTAGGCCAGCCGGACGCGGGCGCTTTGCCGCGCTGCTGGCTGTTATAAGCCCTTGATAGTGGTGGTAGCAGCCGGCGCGCGGTTATAAGGGCAATGGTGGCCGCCGCCCGCTCCTGCACACTTGGCGCAATGGGCAAAATGTTTGACTTTGGAGCAGAAGAGCCACAAGTTCGAATCCTGAGTCGGTAAATAGGTTTTT</canonical>
            <polymorphic>GTAGGATTTAGAGGAAATTCGATGTATTTTTCGATTTCATCGCAAAATTGGAAAAATTGGAGAAATTGCAATTTTAAAAGTTTTGAAATTTTGTAATAATGATCTCACCCAATTCCGAACTAAATCCTAAAAGTAGCAGCATGAAAAAAAACAAAAAGCTCCATAACCAAGGAATCGGCATCTGATTCATTGCATCTGGATATGCTACAAATGCCAGTGTGGGTCCACTCGCCACAACATCAGACACCTGCACCCCGCGTTGTTTCGCCAAGAAGCCCAGAGTTGAAAAAACCGCGCCTCCACCAATCAAGGCGGCCACCGCCACTGCCACGGGCTTGTAACAGCCAGCAGCGCCGCCAAGCGCCCGTGTCCGGCTGGCCCAGTGGGTAAGAGGCCTGACTCTGGATCAGAAGGAGCAAAAGTTCGAATCCTCTTGGAGTATATAGGTATTTTATGGCTTTTGACTCGAATTTTTTATTGTTTCAAGTCTAAAATCGATYTCTAAACCAGCGTTTGAAGCAAAAAATTAGATTTTCAAGCTCAAAATTGCACATACCCTATAAAAATTATGTCCTATATCAATTAAGGGGTAGGTTGGGAAAATTAGCTGTTTGAACCGGAAACAGAGTTTAAATGACTTTAAAAAAGAATTTCGCCTCGAAAACTTCAAAAAACTGGGTTCCAGTGCGATTTTTGACTTGAAACAATAAAAAGTTCGGGTCAAACACCCTAAAAAACCTATATACCCCAAGAGGATTCGAACTTTTGCTTCTTCTGATCCAAAGTCAGACGTCTTACCCCCTAGGCCAGCCGGACGCGGGCGCTTTGCCGCGCTGCTGGCTGTTATAAGCCCTTGATAGTGGTGGTAGCAGCCGGCGCGCGGTTATAAGGGCAATGGTGGCCGCCGCCCGCTCCTGCACACTTGGCGCAATGGGCAAAATGTTTGACTTTGGAGCAGAAGAGCCACAAGTTCGAATCCTGAGTCGGTAAATAGGTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATGCTACAAATGCCAGTGT</pcr_primer_p1>
		<pcr_primer_p2>TATAGGGTATGTGCAATTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>363</pcr_amplicon_size>
		<canonical_amplicon>ATATGCTACAAATGCCAGTGTGGGTCCACTCGCCACAACATCAGACACCTGCACCCCGCGTTGTTTCGCCAAGAAGCCCAGAGTTGAAAAAACCGCGCCTCCACCAATCAAGGCGGCCACCGCCACTGCCACGGGCTTGTAACAGCCAGCAGCGCCGCCAAGCGCCCGTGTCCGGCTGGCCCAGTGGGTAAGAGGCCTGACTCTGGATCAGAAGGAGCAAAAGTTCGAATCCTCTTGGAGTATATAGGTATTTTATGGCTTTTGACTCGAATTTTTTATTGTTTCAAGTCTAAAATCGATTTCTAAACCAGCGTTTGAAGCAAAAAATTAGATTTTCAAGCTCAAAATTGCACATACCCTATA</canonical_amplicon>
		<polymorphic_amplicon>ATATGCTACAAATGCCAGTGTGGGTCCACTCGCCACAACATCAGACACCTGCACCCCGCGTTGTTTCGCCAAGAAGCCCAGAGTTGAAAAAACCGCGCCTCCACCAATCAAGGCGGCCACCGCCACTGCCACGGGCTTGTAACAGCCAGCAGCGCCGCCAAGCGCCCGTGTCCGGCTGGCCCAGTGGGTAAGAGGCCTGACTCTGGATCAGAAGGAGCAAAAGTTCGAATCCTCTTGGAGTATATAGGTATTTTATGGCTTTTGACTCGAATTTTTTATTGTTTCAAGTCTAAAATCGATYTCTAAACCAGCGTTTGAAGCAAAAAATTAGATTTTCAAGCTCAAAATTGCACATACCCTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30718</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>19183</contig_pos>
        <strand>+</strand>
        <context>YTCTAAGAAA[A/G]CCcacactaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGCTGAAATATCAAACTTTAAAATAGAACATTTCAAAATTTCTAAGAAA</left_flank>
        <right_flank>CCCACACTAACCGTCAACTTTGAGCTCAATTATCTCGCTTCCTATAAGAG</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATACATATAACAATATTTACATCATTCTGTAGCCCTGAAAATTTCCAACATTTTAAATTTAACAATCTGAAGGATCCCTTAAGAATGAGCAATGATTTCCAGCACATCGAAATGTCCTCCTTGAAATCGAGCCGTGAAGCCATCTACAAAGAACTCGACGCCGCTTATCCAGACTCAATGTTCACCGTGTTTTGTCTGAAAAATTCCACGTCATCGTATCAAGCAGATGCGAAGAGGTACTGTATGGAAAAGAGCAAGGATCGCATGTGCTATGTTTTCGAATTTTAACACTCTGGAAATTTTTTATTATTTTGAAAATTGAACTTATGCACCTAATTTTAATAAATATTTTACATCAATTTTGTTCTGTGTTTATTGAATCTTGAAGTTGAGAGTTCAAATTTTGAACTTTAAAAGTCCAATTCATGTTTTGCAGATTCTGGAAAAGAAGCTGAAATATCAAACTTTAAAATAGAACATTTCAAAATTTCTAAGAAAACCCACACTAACCGTCAACTTTGAGCTCAATTATCTCGCTTCCTATAAGAGATATCATAAAGTGATAAACTGATAAAATGTTGCTGATATCATGGTGAACACTTTATCAGTCGACAAATTTTTAATATCTTTAACGAAAACTGAGATAAATCAACTCAAAGTTGACAGCTATTAAGCCCTTCTATCACAGGTTCCAAGGCTAGCTTTAAGAGCTCATAACTACGGGTCCAATATACCGGTTTTTATTAAATTTGTATTTTTGAATTTGGCAGGTTTTGTAAATTAAAATCATATTAAATTTGACTTGCTTACTTAAAAAATAACAAAAAAACAAGCAGAATACCTATAGTCATTTTTGAAAACAGCTTTCTAGCCGGTGGTGGATCATACTTTTTGAGCCCAATTATCTCGGTTCTTGTGAAAGAAATCAAAAATTTGTCAACTGATAAAATATTGCCGATAATGTCATAAACATTTTATTAGTTTACCATTTTATGATAT</canonical>
            <polymorphic>CATACATATAACAATATTTACATCATTCTGTAGCCCTGAAAATTTCCAACATTTTAAATTTAACAATCTGAAGGATCCCTTAAGAATGAGCAATGATTTCCAGCACATCGAAATGTCCTCCTTGAAATCGAGCCGTGAAGCCATCTACAAAGAACTCGACGCCGCTTATCCAGACTCAATGTTCACCGTGTTTTGTCTGAAAAATTCCACGTCATCGTATCAAGCAGATGCGAAGAGGTACTGTATGGAAAAGAGCAAGGATCGCATGTGCTATGTTTTCGAATTTTAACACTCTGGAAATTTTTTATTATTTTGAAAATTGAACTTATGCACCTAATTTTAATAAATATTTTACATCAATTTTGTTCTGTGTTTATTGAATCTTGAAGTTGAGAGTTCAAATTTTGAACTTTAAAAGTCCAATTCATGTTTTGCAGATTCTGGAAAAGAAGCTGAAATATCAAACTTTAAAATAGAACATTTCAAAATTTCTAAGAAARCCCACACTAACCGTCAACTTTGAGCTCAATTATCTCGCTTCCTATAAGAGATATCATAAAGTGATAAACTGATAAAATGTTGCTGATATCATGGTGAACACTTTATCAGTCGACAAATTTTTAATATCTTTAACGAAAACTGAGATAAATCAACTCAAAGTTGACAGCTATTAAGCCCTTCTATCACAGGTTCCAAGGCTAGCTTTAAGAGCTCATAACTACGGGTCCAATATACCGGTTTTTATTAAATTTGTATTTTTGAATTTGGCAGGTTTTGTAAATTAAAATCATATTAAATTTGACTTGCTTACTTAAAAAATAACAAAAAAACAAGCAGAATACCTATAGTCATTTTTGAAAACAGCTTTCTAGCCGGTGGTGGATCATACTTTTTGAGCCCAATTATCTCGGTTCTTGTGAAAGAAATCAAAAATTTGTCAACTGATAAAATATTGCCGATAATGTCATAAACATTTTATTAGTTTACCATTTTATGATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAGAAGCTGAAATATCAAAC</pcr_primer_p1>
		<pcr_primer_p2>TATATTGGACCCGTAGTTATGAG</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>GAAAAGAAGCTGAAATATCAAACTTTAAAATAGAACATTTCAAAATTTCTAAGAAAACCCACACTAACCGTCAACTTTGAGCTCAATTATCTCGCTTCCTATAAGAGATATCATAAAGTGATAAACTGATAAAATGTTGCTGATATCATGGTGAACACTTTATCAGTCGACAAATTTTTAATATCTTTAACGAAAACTGAGATAAATCAACTCAAAGTTGACAGCTATTAAGCCCTTCTATCACAGGTTCCAAGGCTAGCTTTAAGAGCTCATAACTACGGGTCCAATATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAGAAGCTGAAATATCAAACTTTAAAATAGAACATTTCAAAATTTCTAAGAAARCCCACACTAACCGTCAACTTTGAGCTCAATTATCTCGCTTCCTATAAGAGATATCATAAAGTGATAAACTGATAAAATGTTGCTGATATCATGGTGAACACTTTATCAGTCGACAAATTTTTAATATCTTTAACGAAAACTGAGATAAATCAACTCAAAGTTGACAGCTATTAAGCCCTTCTATCACAGGTTCCAAGGCTAGCTTTAAGAGCTCATAACTACGGGTCCAATATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30719</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>19268</contig_pos>
        <strand></strand>
        <context>aaatgttgct[G/T]atatcatggt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGCTTCCTATAAGAGATATCATAAAGTGATAAACTGATAAAATGTTGCT</left_flank>
        <right_flank>ATATCATGGTGAACACTTTATCAGTCGACAAATTTTTAATATCTTTAACG</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAGCAATGATTTCCAGCACATCGAAATGTCCTCCTTGAAATCGAGCCGTGAAGCCATCTACAAAGAACTCGACGCCGCTTATCCAGACTCAATGTTCACCGTGTTTTGTCTGAAAAATTCCACGTCATCGTATCAAGCAGATGCGAAGAGGTACTGTATGGAAAAGAGCAAGGATCGCATGTGCTATGTTTTCGAATTTTAACACTCTGGAAATTTTTTATTATTTTGAAAATTGAACTTATGCACCTAATTTTAATAAATATTTTACATCAATTTTGTTCTGTGTTTATTGAATCTTGAAGTTGAGAGTTCAAATTTTGAACTTTAAAAGTCCAATTCATGTTTTGCAGATTCTGGAAAAGAAGCTGAAATATCAAACTTTAAAATAGAACATTTCAAAATTTCTAAGAAAACCCACACTAACCGTCAACTTTGAGCTCAATTATCTCGCTTCCTATAAGAGATATCATAAAGTGATAAACTGATAAAATGTTGCTGATATCATGGTGAACACTTTATCAGTCGACAAATTTTTAATATCTTTAACGAAAACTGAGATAAATCAACTCAAAGTTGACAGCTATTAAGCCCTTCTATCACAGGTTCCAAGGCTAGCTTTAAGAGCTCATAACTACGGGTCCAATATACCGGTTTTTATTAAATTTGTATTTTTGAATTTGGCAGGTTTTGTAAATTAAAATCATATTAAATTTGACTTGCTTACTTAAAAAATAACAAAAAAACAAGCAGAATACCTATAGTCATTTTTGAAAACAGCTTTCTAGCCGGTGGTGGATCATACTTTTTGAGCCCAATTATCTCGGTTCTTGTGAAAGAAATCAAAAATTTGTCAACTGATAAAATATTGCCGATAATGTCATAAACATTTTATTAGTTTACCATTTTATGATATCTCTTGTGGAAACCGAGATAATGAAGCTCAAACTTTTGAGACCACCTTCCTAGCCGTAGGAGGGTCATATCCTTTGAGCTTAATT</canonical>
            <polymorphic>ATGAGCAATGATTTCCAGCACATCGAAATGTCCTCCTTGAAATCGAGCCGTGAAGCCATCTACAAAGAACTCGACGCCGCTTATCCAGACTCAATGTTCACCGTGTTTTGTCTGAAAAATTCCACGTCATCGTATCAAGCAGATGCGAAGAGGTACTGTATGGAAAAGAGCAAGGATCGCATGTGCTATGTTTTCGAATTTTAACACTCTGGAAATTTTTTATTATTTTGAAAATTGAACTTATGCACCTAATTTTAATAAATATTTTACATCAATTTTGTTCTGTGTTTATTGAATCTTGAAGTTGAGAGTTCAAATTTTGAACTTTAAAAGTCCAATTCATGTTTTGCAGATTCTGGAAAAGAAGCTGAAATATCAAACTTTAAAATAGAACATTTCAAAATTTCTAAGAAAACCCACACTAACCGTCAACTTTGAGCTCAATTATCTCGCTTCCTATAAGAGATATCATAAAGTGATAAACTGATAAAATGTTGCTKATATCATGGTGAACACTTTATCAGTCGACAAATTTTTAATATCTTTAACGAAAACTGAGATAAATCAACTCAAAGTTGACAGCTATTAAGCCCTTCTATCACAGGTTCCAAGGCTAGCTTTAAGAGCTCATAACTACGGGTCCAATATACCGGTTTTTATTAAATTTGTATTTTTGAATTTGGCAGGTTTTGTAAATTAAAATCATATTAAATTTGACTTGCTTACTTAAAAAATAACAAAAAAACAAGCAGAATACCTATAGTCATTTTTGAAAACAGCTTTCTAGCCGGTGGTGGATCATACTTTTTGAGCCCAATTATCTCGGTTCTTGTGAAAGAAATCAAAAATTTGTCAACTGATAAAATATTGCCGATAATGTCATAAACATTTTATTAGTTTACCATTTTATGATATCTCTTGTGGAAACCGAGATAATGAAGCTCAAACTTTTGAGACCACCTTCCTAGCCGTAGGAGGGTCATATCCTTTGAGCTTAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>467 411 87 35</canonical_bands>
                <polymorphic_bands>467 446 87</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAGAAGCTGAAATATCAAAC</pcr_primer_p1>
		<pcr_primer_p2>TATATTGGACCCGTAGTTATGAG</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>GAAAAGAAGCTGAAATATCAAACTTTAAAATAGAACATTTCAAAATTTCTAAGAAAACCCACACTAACCGTCAACTTTGAGCTCAATTATCTCGCTTCCTATAAGAGATATCATAAAGTGATAAACTGATAAAATGTTGCTGATATCATGGTGAACACTTTATCAGTCGACAAATTTTTAATATCTTTAACGAAAACTGAGATAAATCAACTCAAAGTTGACAGCTATTAAGCCCTTCTATCACAGGTTCCAAGGCTAGCTTTAAGAGCTCATAACTACGGGTCCAATATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAGAAGCTGAAATATCAAACTTTAAAATAGAACATTTCAAAATTTCTAAGAAAACCCACACTAACCGTCAACTTTGAGCTCAATTATCTCGCTTCCTATAAGAGATATCATAAAGTGATAAACTGATAAAATGTTGCTKATATCATGGTGAACACTTTATCAGTCGACAAATTTTTAATATCTTTAACGAAAACTGAGATAAATCAACTCAAAGTTGACAGCTATTAAGCCCTTCTATCACAGGTTCCAAGGCTAGCTTTAAGAGCTCATAACTACGGGTCCAATATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30720</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>19282</contig_pos>
        <strand></strand>
        <context>tcatggtgaa[C/T]actttatcag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGATATCATAAAGTGATAAACTGATAAAATGTTGCTGATATCATGGTGAA</left_flank>
        <right_flank>ACTTTATCAGTCGACAAATTTTTAATATCTTTAACGAAAACTGAGATAAA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGCACATCGAAATGTCCTCCTTGAAATCGAGCCGTGAAGCCATCTACAAAGAACTCGACGCCGCTTATCCAGACTCAATGTTCACCGTGTTTTGTCTGAAAAATTCCACGTCATCGTATCAAGCAGATGCGAAGAGGTACTGTATGGAAAAGAGCAAGGATCGCATGTGCTATGTTTTCGAATTTTAACACTCTGGAAATTTTTTATTATTTTGAAAATTGAACTTATGCACCTAATTTTAATAAATATTTTACATCAATTTTGTTCTGTGTTTATTGAATCTTGAAGTTGAGAGTTCAAATTTTGAACTTTAAAAGTCCAATTCATGTTTTGCAGATTCTGGAAAAGAAGCTGAAATATCAAACTTTAAAATAGAACATTTCAAAATTTCTAAGAAAACCCACACTAACCGTCAACTTTGAGCTCAATTATCTCGCTTCCTATAAGAGATATCATAAAGTGATAAACTGATAAAATGTTGCTGATATCATGGTGAACACTTTATCAGTCGACAAATTTTTAATATCTTTAACGAAAACTGAGATAAATCAACTCAAAGTTGACAGCTATTAAGCCCTTCTATCACAGGTTCCAAGGCTAGCTTTAAGAGCTCATAACTACGGGTCCAATATACCGGTTTTTATTAAATTTGTATTTTTGAATTTGGCAGGTTTTGTAAATTAAAATCATATTAAATTTGACTTGCTTACTTAAAAAATAACAAAAAAACAAGCAGAATACCTATAGTCATTTTTGAAAACAGCTTTCTAGCCGGTGGTGGATCATACTTTTTGAGCCCAATTATCTCGGTTCTTGTGAAAGAAATCAAAAATTTGTCAACTGATAAAATATTGCCGATAATGTCATAAACATTTTATTAGTTTACCATTTTATGATATCTCTTGTGGAAACCGAGATAATGAAGCTCAAACTTTTGAGACCACCTTCCTAGCCGTAGGAGGGTCATATCCTTTGAGCTTAATTATCTCAGCTCCTGT</canonical>
            <polymorphic>CCAGCACATCGAAATGTCCTCCTTGAAATCGAGCCGTGAAGCCATCTACAAAGAACTCGACGCCGCTTATCCAGACTCAATGTTCACCGTGTTTTGTCTGAAAAATTCCACGTCATCGTATCAAGCAGATGCGAAGAGGTACTGTATGGAAAAGAGCAAGGATCGCATGTGCTATGTTTTCGAATTTTAACACTCTGGAAATTTTTTATTATTTTGAAAATTGAACTTATGCACCTAATTTTAATAAATATTTTACATCAATTTTGTTCTGTGTTTATTGAATCTTGAAGTTGAGAGTTCAAATTTTGAACTTTAAAAGTCCAATTCATGTTTTGCAGATTCTGGAAAAGAAGCTGAAATATCAAACTTTAAAATAGAACATTTCAAAATTTCTAAGAAAACCCACACTAACCGTCAACTTTGAGCTCAATTATCTCGCTTCCTATAAGAGATATCATAAAGTGATAAACTGATAAAATGTTGCTGATATCATGGTGAAYACTTTATCAGTCGACAAATTTTTAATATCTTTAACGAAAACTGAGATAAATCAACTCAAAGTTGACAGCTATTAAGCCCTTCTATCACAGGTTCCAAGGCTAGCTTTAAGAGCTCATAACTACGGGTCCAATATACCGGTTTTTATTAAATTTGTATTTTTGAATTTGGCAGGTTTTGTAAATTAAAATCATATTAAATTTGACTTGCTTACTTAAAAAATAACAAAAAAACAAGCAGAATACCTATAGTCATTTTTGAAAACAGCTTTCTAGCCGGTGGTGGATCATACTTTTTGAGCCCAATTATCTCGGTTCTTGTGAAAGAAATCAAAAATTTGTCAACTGATAAAATATTGCCGATAATGTCATAAACATTTTATTAGTTTACCATTTTATGATATCTCTTGTGGAAACCGAGATAATGAAGCTCAAACTTTTGAGACCACCTTCCTAGCCGTAGGAGGGTCATATCCTTTGAGCTTAATTATCTCAGCTCCTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>192 132 89 86 61 57 55 48 41 40 38 36 33 32 21 19 6 5 4 3 2</canonical_bands>
                <polymorphic_bands>192 132 90 89 61 57 55 48 41 40 38 36 33 32 21 19 6 5 3 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>332 277 115 84 81 51 45 15</canonical_bands>
                <polymorphic_bands>332 277 115 96 84 51 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAGAAGCTGAAATATCAAAC</pcr_primer_p1>
		<pcr_primer_p2>TATATTGGACCCGTAGTTATGAG</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>GAAAAGAAGCTGAAATATCAAACTTTAAAATAGAACATTTCAAAATTTCTAAGAAAACCCACACTAACCGTCAACTTTGAGCTCAATTATCTCGCTTCCTATAAGAGATATCATAAAGTGATAAACTGATAAAATGTTGCTGATATCATGGTGAACACTTTATCAGTCGACAAATTTTTAATATCTTTAACGAAAACTGAGATAAATCAACTCAAAGTTGACAGCTATTAAGCCCTTCTATCACAGGTTCCAAGGCTAGCTTTAAGAGCTCATAACTACGGGTCCAATATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAGAAGCTGAAATATCAAACTTTAAAATAGAACATTTCAAAATTTCTAAGAAAACCCACACTAACCGTCAACTTTGAGCTCAATTATCTCGCTTCCTATAAGAGATATCATAAAGTGATAAACTGATAAAATGTTGCTGATATCATGGTGAAYACTTTATCAGTCGACAAATTTTTAATATCTTTAACGAAAACTGAGATAAATCAACTCAAAGTTGACAGCTATTAAGCCCTTCTATCACAGGTTCCAAGGCTAGCTTTAAGAGCTCATAACTACGGGTCCAATATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30721</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21024</contig_pos>
        <strand>+</strand>
        <context>CCTTCAYTTT[A/G]AAATAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTT</left_flank>
        <right_flank>AAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGGAATTTTCAGGGTTTTTTTTCTGTTTTTTTTTTCAATATTTCCCGGATTATTTTGACCTTATAATCTTTAAAATTCGTCTAGTTTCATTTTTCCAGCCATGTCAACACTGGGTCGTAGTAAGACCCCTCAACGGGACGATACCAACAAAAAACCAAGTGTTTTTGAGAAACTTTCTGGAACATTGTCCAGAAAGAAGAAGATTCCAGAAGATGGAGAGCATGATGGACCAGCTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATT</canonical>
            <polymorphic>GTGGAATTTTCAGGGTTTTTTTTCTGTTTTTTTTTTCAATATTTCCCGGATTATTTTGACCTTATAATCTTTAAAATTCGTCTAGTTTCATTTTTCCAGCCATGTCAACACTGGGTCGTAGTAAGACCCCTCAACGGGACGATACCAACAAAAAACCAAGTGTTTTTGAGAAACTTTCTGGAACATTGTCCAGAAAGAAGAAGATTCCAGAAGATGGAGAGCATGATGGACCAGCTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTRAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>234 167 134 129 125 97 72 26 8 8</canonical_bands>
                <polymorphic_bands>234 167 151 134 129 97 72 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>234 125 110 85 71 66 60 49 44 37 26 24 16 11 11 9 8 8 6</canonical_bands>
                <polymorphic_bands>234 151 110 85 71 66 60 49 44 37 24 16 11 11 9 8 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCACAACGCTTAATTAGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTATCAAACTGAAGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTRAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30722</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21037</contig_pos>
        <strand>+</strand>
        <context>ATAAAAATCT[C/G]WAAWTTSGGR</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCT</left_flank>
        <right_flank>AAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTTTTTTTCTGTTTTTTTTTTCAATATTTCCCGGATTATTTTGACCTTATAATCTTTAAAATTCGTCTAGTTTCATTTTTCCAGCCATGTCAACACTGGGTCGTAGTAAGACCCCTCAACGGGACGATACCAACAAAAAACCAAGTGTTTTTGAGAAACTTTCTGGAACATTGTCCAGAAAGAAGAAGATTCCAGAAGATGGAGAGCATGATGGACCAGCTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGA</canonical>
            <polymorphic>GGTTTTTTTTCTGTTTTTTTTTTCAATATTTCCCGGATTATTTTGACCTTATAATCTTTAAAATTCGTCTAGTTTCATTTTTCCAGCCATGTCAACACTGGGTCGTAGTAAGACCCCTCAACGGGACGATACCAACAAAAAACCAAGTGTTTTTGAGAAACTTTCTGGAACATTGTCCAGAAAGAAGAAGATTCCAGAAGATGGAGAGCATGATGGACCAGCTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTSAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCACAACGCTTAATTAGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTATCAAACTGAAGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTSAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30723</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21038</contig_pos>
        <strand>+</strand>
        <context>TAAAAATCTS[A/T]AAWTTSGGRY</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTC</left_flank>
        <right_flank>AAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTTTTTCTGTTTTTTTTTTCAATATTTCCCGGATTATTTTGACCTTATAATCTTTAAAATTCGTCTAGTTTCATTTTTCCAGCCATGTCAACACTGGGTCGTAGTAAGACCCCTCAACGGGACGATACCAACAAAAAACCAAGTGTTTTTGAGAAACTTTCTGGAACATTGTCCAGAAAGAAGAAGATTCCAGAAGATGGAGAGCATGATGGACCAGCTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAA</canonical>
            <polymorphic>GTTTTTTTTCTGTTTTTTTTTTCAATATTTCCCGGATTATTTTGACCTTATAATCTTTAAAATTCGTCTAGTTTCATTTTTCCAGCCATGTCAACACTGGGTCGTAGTAAGACCCCTCAACGGGACGATACCAACAAAAAACCAAGTGTTTTTGAGAAACTTTCTGGAACATTGTCCAGAAAGAAGAAGATTCCAGAAGATGGAGAGCATGATGGACCAGCTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCWAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCACAACGCTTAATTAGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTATCAAACTGAAGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCWAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30724</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21041</contig_pos>
        <strand>+</strand>
        <context>AAATCTSWAA[A/T]TTSGGRYCAW</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAA</left_flank>
        <right_flank>TTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTCTGTTTTTTTTTTCAATATTTCCCGGATTATTTTGACCTTATAATCTTTAAAATTCGTCTAGTTTCATTTTTCCAGCCATGTCAACACTGGGTCGTAGTAAGACCCCTCAACGGGACGATACCAACAAAAAACCAAGTGTTTTTGAGAAACTTTCTGGAACATTGTCCAGAAAGAAGAAGATTCCAGAAGATGGAGAGCATGATGGACCAGCTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATA</canonical>
            <polymorphic>TTTTTTCTGTTTTTTTTTTCAATATTTCCCGGATTATTTTGACCTTATAATCTTTAAAATTCGTCTAGTTTCATTTTTCCAGCCATGTCAACACTGGGTCGTAGTAAGACCCCTCAACGGGACGATACCAACAAAAAACCAAGTGTTTTTGAGAAACTTTCTGGAACATTGTCCAGAAAGAAGAAGATTCCAGAAGATGGAGAGCATGATGGACCAGCTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAWTTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>216 208 139 80 80 57 53 43 41 31 21 17 7 7</canonical_bands>
                <polymorphic_bands>288 216 139 80 57 53 43 41 31 21 17 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>209 112 99 80 77 70 57 53 33 32 31 27 26 21 17 10 10 8 7 7 7 7</canonical_bands>
                <polymorphic_bands>209 112 99 87 80 70 57 53 33 32 31 27 26 21 17 10 8 7 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCACAACGCTTAATTAGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTATCAAACTGAAGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAWTTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30725</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21044</contig_pos>
        <strand>+</strand>
        <context>TCTSWAAWTT[C/G]GGRYCAWTTS</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATT</left_flank>
        <right_flank>GGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTGTTTTTTTTTTCAATATTTCCCGGATTATTTTGACCTTATAATCTTTAAAATTCGTCTAGTTTCATTTTTCCAGCCATGTCAACACTGGGTCGTAGTAAGACCCCTCAACGGGACGATACCAACAAAAAACCAAGTGTTTTTGAGAAACTTTCTGGAACATTGTCCAGAAAGAAGAAGATTCCAGAAGATGGAGAGCATGATGGACCAGCTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAA</canonical>
            <polymorphic>TTTCTGTTTTTTTTTTCAATATTTCCCGGATTATTTTGACCTTATAATCTTTAAAATTCGTCTAGTTTCATTTTTCCAGCCATGTCAACACTGGGTCGTAGTAAGACCCCTCAACGGGACGATACCAACAAAAAACCAAGTGTTTTTGAGAAACTTTCTGGAACATTGTCCAGAAAGAAGAAGATTCCAGAAGATGGAGAGCATGATGGACCAGCTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTSGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>216 208 139 80 80 54 53 43 41 31 24 17 7 7</canonical_bands>
                <polymorphic_bands>288 216 139 80 54 53 43 41 31 24 17 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCACAACGCTTAATTAGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTATCAAACTGAAGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTSGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30726</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21047</contig_pos>
        <strand>+</strand>
        <context>SWAAWTTSGG[A/G]YCAWTTSTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGG</left_flank>
        <right_flank>CCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTTTTTTTTTTCAATATTTCCCGGATTATTTTGACCTTATAATCTTTAAAATTCGTCTAGTTTCATTTTTCCAGCCATGTCAACACTGGGTCGTAGTAAGACCCCTCAACGGGACGATACCAACAAAAAACCAAGTGTTTTTGAGAAACTTTCTGGAACATTGTCCAGAAAGAAGAAGATTCCAGAAGATGGAGAGCATGATGGACCAGCTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATC</canonical>
            <polymorphic>CTGTTTTTTTTTTCAATATTTCCCGGATTATTTTGACCTTATAATCTTTAAAATTCGTCTAGTTTCATTTTTCCAGCCATGTCAACACTGGGTCGTAGTAAGACCCCTCAACGGGACGATACCAACAAAAAACCAAGTGTTTTTGAGAAACTTTCTGGAACATTGTCCAGAAAGAAGAAGATTCCAGAAGATGGAGAGCATGATGGACCAGCTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGRCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>161 149 135 120 94 84 77 76 46 28 10 10 10</canonical_bands>
                <polymorphic_bands>161 149 135 120 94 84 77 76 56 28 10 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCACAACGCTTAATTAGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTATCAAACTGAAGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGRCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30727</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21048</contig_pos>
        <strand>+</strand>
        <context>WAAWTTSGGR[C/T]CAWTTSTAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGG</left_flank>
        <right_flank>CAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTTTTTTTTTCAATATTTCCCGGATTATTTTGACCTTATAATCTTTAAAATTCGTCTAGTTTCATTTTTCCAGCCATGTCAACACTGGGTCGTAGTAAGACCCCTCAACGGGACGATACCAACAAAAAACCAAGTGTTTTTGAGAAACTTTCTGGAACATTGTCCAGAAAGAAGAAGATTCCAGAAGATGGAGAGCATGATGGACCAGCTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCT</canonical>
            <polymorphic>TGTTTTTTTTTTCAATATTTCCCGGATTATTTTGACCTTATAATCTTTAAAATTCGTCTAGTTTCATTTTTCCAGCCATGTCAACACTGGGTCGTAGTAAGACCCCTCAACGGGACGATACCAACAAAAAACCAAGTGTTTTTGAGAAACTTTCTGGAACATTGTCCAGAAAGAAGAAGATTCCAGAAGATGGAGAGCATGATGGACCAGCTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGYCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>503 293 204</canonical_bands>
                <polymorphic_bands>796 204</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>161 149 135 121 94 84 77 75 46 28 10 10 10</canonical_bands>
                <polymorphic_bands>161 149 135 121 94 84 77 75 56 28 10 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCACAACGCTTAATTAGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTATCAAACTGAAGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGYCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30728</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21051</contig_pos>
        <strand>+</strand>
        <context>WTTSGGRYCA[A/T]TTSTAGCCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCA</left_flank>
        <right_flank>TTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTTTTCAATATTTCCCGGATTATTTTGACCTTATAATCTTTAAAATTCGTCTAGTTTCATTTTTCCAGCCATGTCAACACTGGGTCGTAGTAAGACCCCTCAACGGGACGATACCAACAAAAAACCAAGTGTTTTTGAGAAACTTTCTGGAACATTGTCCAGAAAGAAGAAGATTCCAGAAGATGGAGAGCATGATGGACCAGCTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAA</canonical>
            <polymorphic>TTTTTTTTTCAATATTTCCCGGATTATTTTGACCTTATAATCTTTAAAATTCGTCTAGTTTCATTTTTCCAGCCATGTCAACACTGGGTCGTAGTAAGACCCCTCAACGGGACGATACCAACAAAAAACCAAGTGTTTTTGAGAAACTTTCTGGAACATTGTCCAGAAAGAAGAAGATTCCAGAAGATGGAGAGCATGATGGACCAGCTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAWTTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>209 112 99 80 77 70 53 47 33 32 31 31 27 26 17 10 10 8 7 7 7 7</canonical_bands>
                <polymorphic_bands>209 112 99 80 80 77 53 47 33 32 31 31 27 26 17 10 8 7 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCACAACGCTTAATTAGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTATCAAACTGAAGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAWTTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30729</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21166</contig_pos>
        <strand>+</strand>
        <context>TTTACATATT[C/T]AAATAGTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATT</left_flank>
        <right_flank>AAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACCAACAAAAAACCAAGTGTTTTTGAGAAACTTTCTGGAACATTGTCCAGAAAGAAGAAGATTCCAGAAGATGGAGAGCATGATGGACCAGCTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTT</canonical>
            <polymorphic>TACCAACAAAAAACCAAGTGTTTTTGAGAAACTTTCTGGAACATTGTCCAGAAAGAAGAAGATTCCAGAAGATGGAGAGCATGATGGACCAGCTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTYAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGGTGCTTTGAGATTTACC</pcr_primer_p1>
		<pcr_primer_p2>AAAATAAGGGACATTTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>AGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTT</canonical_amplicon>
		<polymorphic_amplicon>AGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTYAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30730</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21223</contig_pos>
        <strand>+</strand>
        <context>TTTAGGCTTT[A/T]TTGAGCCGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTT</left_flank>
        <right_flank>TTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGATTCCAGAAGATGGAGAGCATGATGGACCAGCTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATA</canonical>
            <polymorphic>GAAGATTCCAGAAGATGGAGAGCATGATGGACCAGCTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTWTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGGTGCTTTGAGATTTACC</pcr_primer_p1>
		<pcr_primer_p2>AAAATAAGGGACATTTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>AGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTT</canonical_amplicon>
		<polymorphic_amplicon>AGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTWTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30731</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21239</contig_pos>
        <strand>+</strand>
        <context>CCGAGTTATA[A/G]CYCTTTYAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATA</left_flank>
        <right_flank>CGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGAGCATGATGGACCAGCTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTG</canonical>
            <polymorphic>GGAGAGCATGATGGACCAGCTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATARCGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>341 326 171 162</canonical_bands>
                <polymorphic_bands>512 326 162</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTTCAGTTTGATACAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATATTGGCTTACAACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATARCGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30732</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21241</contig_pos>
        <strand>+</strand>
        <context>GAGTTATARC[C/T]CTTTYAAGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAAC</left_flank>
        <right_flank>CTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGCATGATGGACCAGCTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGAT</canonical>
            <polymorphic>AGAGCATGATGGACCAGCTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACYCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTTCAGTTTGATACAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATATTGGCTTACAACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACYCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30733</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21246</contig_pos>
        <strand>+</strand>
        <context>ATARCYCTTT[C/T]AAGTTGTAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTT</left_flank>
        <right_flank>AAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGATGGACCAGCTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCT</canonical>
            <polymorphic>ATGATGGACCAGCTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTYAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>230 167 134 129 125 97 84 26 8</canonical_bands>
                <polymorphic_bands>231 230 167 129 125 84 26 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>134 125 110 97 85 83 66 60 49 44 37 26 24 16 11 11 8 8 6</canonical_bands>
                <polymorphic_bands>134 125 122 110 97 83 66 60 49 44 26 24 16 11 11 8 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTTCAGTTTGATACAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATATTGGCTTACAACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTYAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30734</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21257</contig_pos>
        <strand>+</strand>
        <context>AAGTTGTAAG[C/G]MTWMKKTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAG</left_flank>
        <right_flank>CTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTT</canonical>
            <polymorphic>GCTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGSCTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>499 391 110</canonical_bands>
                <polymorphic_bands>609 391</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTTCAGTTTGATACAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATATTGGCTTACAACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGSCTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30735</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21258</contig_pos>
        <strand>+</strand>
        <context>AGTTGTAAGS[A/C]TWMKKTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGA</left_flank>
        <right_flank>TCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTG</canonical>
            <polymorphic>CTGGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGAMTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTCGAG</site>
                <isoschizomers>
                    <enzyme>BssHI</enzyme>
                    <enzyme>PaeR7I</enzyme>
                    <enzyme>SciI</enzyme>
                    <enzyme>Sfr274I</enzyme>
                    <enzyme>SlaI</enzyme>
                    <enzyme>TliI</enzyme>
                    <enzyme>XhoI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTTCAGTTTGATACAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATATTGGCTTACAACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGAMTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30736</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21260</contig_pos>
        <strand>+</strand>
        <context>TTGTAAGSMT[A/T]MKKTTTTTGR</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACT</left_flank>
        <right_flank>GAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGAT</canonical>
            <polymorphic>GGAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTWGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTCGAG</site>
                <isoschizomers>
                    <enzyme>BssHI</enzyme>
                    <enzyme>PaeR7I</enzyme>
                    <enzyme>SciI</enzyme>
                    <enzyme>Sfr274I</enzyme>
                    <enzyme>SlaI</enzyme>
                    <enzyme>TliI</enzyme>
                    <enzyme>XhoI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 333 167</canonical_bands>
                <polymorphic_bands>833 167</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>496 394 110</canonical_bands>
                <polymorphic_bands>606 394</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTTCAGTTTGATACAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATATTGGCTTACAACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTWGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30737</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21261</contig_pos>
        <strand>+</strand>
        <context>TGTAAGSMTW[A/C]KKTTTTTGRG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTC</left_flank>
        <right_flank>AGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGATA</canonical>
            <polymorphic>GAGGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCMAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTCGAG</site>
                <isoschizomers>
                    <enzyme>BssHI</enzyme>
                    <enzyme>PaeR7I</enzyme>
                    <enzyme>SciI</enzyme>
                    <enzyme>Sfr274I</enzyme>
                    <enzyme>SlaI</enzyme>
                    <enzyme>TliI</enzyme>
                    <enzyme>XhoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 333 168</canonical_bands>
                <polymorphic_bands>832 168</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTTCAGTTTGATACAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATATTGGCTTACAACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCMAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30738</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21263</contig_pos>
        <strand>+</strand>
        <context>TAAGSMTWMK[G/T]TTTTTGRGCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGA</left_flank>
        <right_flank>TTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGATAAC</canonical>
            <polymorphic>GGACATGCTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAKTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGATAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTCGAG</site>
                <isoschizomers>
                    <enzyme>BssHI</enzyme>
                    <enzyme>PaeR7I</enzyme>
                    <enzyme>SciI</enzyme>
                    <enzyme>Sfr274I</enzyme>
                    <enzyme>SlaI</enzyme>
                    <enzyme>TliI</enzyme>
                    <enzyme>XhoI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTTCAGTTTGATACAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATATTGGCTTACAACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAKTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30739</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21270</contig_pos>
        <strand>+</strand>
        <context>WMKKTTTTTG[A/G]GCGCTTTTSA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTG</left_flank>
        <right_flank>GCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGATAACTGTTACA</canonical>
            <polymorphic>CTGGACAACACACTGAGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGRGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGATAACTGTTACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCGCT</site>
                <isoschizomers>
                    <enzyme>AfeI</enzyme>
                    <enzyme>Aor51HI</enzyme>
                    <enzyme>Eco47III</enzyme>
                    <enzyme>FunI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>504 325 171</canonical_bands>
                <polymorphic_bands>675 325</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTTCAGTTTGATACAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATATTGGCTTACAACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGRGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30740</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21285</contig_pos>
        <strand>+</strand>
        <context>TTTTSAGATT[A/T]RWCRAAWWTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATT</left_flank>
        <right_flank>ATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGATAACTGTTACAGTAACCGAGATAAAT</canonical>
            <polymorphic>AGGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTWATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGATAACTGTTACAGTAACCGAGATAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTTCAGTTTGATACAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATATTGGCTTACAACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTWATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30741</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21286</contig_pos>
        <strand>+</strand>
        <context>TTTSAGATTW[A/G]WCRAAWWTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTT</left_flank>
        <right_flank>TCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGATAACTGTTACAGTAACCGAGATAAATG</canonical>
            <polymorphic>GGAGGATGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTRTCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGATAACTGTTACAGTAACCGAGATAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTTCAGTTTGATACAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATATTGGCTTACAACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTRTCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30742</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21292</contig_pos>
        <strand>+</strand>
        <context>ATTWRWCRAA[A/T]WTTCAAMTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAA</left_flank>
        <right_flank>TTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGATAACTGTTACAGTAACCGAGATAAATGAGCTTT</canonical>
            <polymorphic>TGAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAWTTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGATAACTGTTACAGTAACCGAGATAAATGAGCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>208 204 139 80 80 53 43 41 37 31 31 22 17 7 7</canonical_bands>
                <polymorphic_bands>208 204 139 87 80 53 43 41 37 31 31 22 17 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>112 99 83 80 77 70 53 50 37 33 33 32 31 31 27 26 23 17 15 15 10 10 8 7 7 7 7</canonical_bands>
                <polymorphic_bands>112 99 87 83 77 70 53 50 37 33 33 32 31 31 27 26 23 17 15 15 10 10 8 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTTCAGTTTGATACAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATATTGGCTTACAACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAWTTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30743</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21293</contig_pos>
        <strand>+</strand>
        <context>TTWRWCRAAW[A/T]TTCAAMTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAA</left_flank>
        <right_flank>TTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGATAACTGTTACAGTAACCGAGATAAATGAGCTTTA</canonical>
            <polymorphic>GAGGTTTTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAAWTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGATAACTGTTACAGTAACCGAGATAAATGAGCTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>208 205 139 80 80 53 43 41 37 31 31 21 17 7 7</canonical_bands>
                <polymorphic_bands>208 205 139 87 80 53 43 41 37 31 31 21 17 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>112 99 84 80 77 70 53 50 37 33 33 32 31 31 27 26 23 17 15 14 10 10 8 7 7 7 7</canonical_bands>
                <polymorphic_bands>112 99 87 84 77 70 53 50 37 33 33 32 31 31 27 26 23 17 15 14 10 10 8 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTTCAGTTTGATACAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATATTGGCTTACAACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAAWTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30744</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21299</contig_pos>
        <strand>+</strand>
        <context>RAAWWTTCAA[A/C]TTTTATCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAA</left_flank>
        <right_flank>TTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGATAACTGTTACAGTAACCGAGATAAATGAGCTTTAAGTTAG</canonical>
            <polymorphic>TTGGAGGTAATTTTGAATTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAMTTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGATAACTGTTACAGTAACCGAGATAAATGAGCTTTAAGTTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>211 208 139 80 80 53 43 41 37 31 31 17 15 7 7</canonical_bands>
                <polymorphic_bands>211 208 139 80 80 53 50 41 37 31 31 17 15 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>112 99 90 80 77 70 53 50 37 33 33 32 31 31 27 26 23 17 15 10 10 8 8 7 7 7 7</canonical_bands>
                <polymorphic_bands>112 99 90 80 77 70 53 50 37 33 33 33 32 31 31 27 23 17 15 10 10 8 8 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTTCAGTTTGATACAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATATTGGCTTACAACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAMTTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30745</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>21316</contig_pos>
        <strand>+</strand>
        <context>CAAAAAGYTY[A/G]TTTARGCAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTC</left_flank>
        <right_flank>TTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGATAACTGTTACAGTAACCGAGATAAATGAGCTTTAAGTTAGCGGTCTAGGCGGGCTTC</canonical>
            <polymorphic>TTTTTCTTGGATTTAAATTCGCTGAGTTTTAAGGTTAAGATCTTTGAAATTGGTGCAAAATGAAGGAAGTTAGATTGGATCAAACTTTGAGCCTCAAAGATTAAAAAATAGATGCTTTTCAGATTTTTCAAGTTCTCACAACGCTTAATTAGAAATAGTTTTAGAAGATTAAATACATTTTAAAGCCCTTGAAATCCCCTTCACTTTAAAATAAAAATCTCAAAATTCGGGCCAATTCTAGCCGAGTTATAAAGGTTCAAAGTTGTAAGACAGTTTTTTGAGTGGTGCTTTGAGATTTACCGAAATTTCAAATTTTATCAAGAAAAATGTTTAAACACTTTTACATATTCAAATAGTTCTGGAAATTTCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCRTTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTTTTGGGCGCTTTTGAGATTAGACGAATATTCAACTTTATCAAATAGTTTGTTTAAGCAATTTTTAATGTTTTAAAAGTTTAAAAAATTTCCTTCATTTTGAAATAAAAATCTCAAAATTTGGACTTATTTGAGCCGAGTTATAAAGATTTGAAATTCGATTTCTCCTTGAAAAGCTGGTAATAGAAGGGCCCACTTTGAGCCAATTCAACTTTTAACTTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATGAAAAAATTGTCAACTAATAAATTGTTTATCATAATATCACTAATATGTGATCAGCTGACCCATTTTTGATAACTGTTACAGTAACCGAGATAAATGAGCTTTAAGTTAGCGGTCTAGGCGGGCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTTCAGTTTGATACAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATATTGGCTTACAACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCATTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCCTTCAGTTTGATACAAAAATCTTAAAATTTAGGCTTTTTTGAGCCGAGTTATAACGCTTTAAAGTTGTAAGACTCGAGTTTTTGAGCGCTTTTCAGATTTATCAAAATTTCAAATTTTATCAAAAAGCTCRTTTAGGCAATTTTTAACAATTGAAAATTTTTTCAAATGTCCCTTATTTTGAATCAACAATTTTAAAATTTGAGCTTATTTGAGCCGAGTTATGATGCTTCAAAGTTGTAAGCCAATATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30746</snp_id>
        <super_contig>c005500940.Contig1</super_contig>
        <contig_pos>22705</contig_pos>
        <strand>+</strand>
        <context>TGATTTTTTC[A/G]AAAAAAAACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATGGTATGCCATTTGTAATACATCCCAAAAAGTACTGTGATTTTTTC</left_flank>
        <right_flank>AAAAAAAACCGCACTAGTTTCAAAGTCTCATAACATTGCTCAGTTTTATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTTGATGGCCAGATTATTCAGAAGCTTTTGGAAAAGTTGGAACAGATTCGGGTGAGAAATTTGGCGGGAATTTGAAGTTTTGAATCTTTTATTTTCAGATCGAAGTTCCAGAAGTGTCCCAATCGGAGGAGGGACAACGTCAGAAGCTTCAAATTGTCATTCAAACAGCTAATAGAATTTTGGGGCAACCCAGAGATCAGGAGAAGTGGTCCGCTGATTTGATTCATCAGAAGGTAAGCAAATGTGCTCTATTGAAATGCTTTTAGCTCAAAAGATTGCTAACTTTAGAAGGCTCAAGATCATATGCAATTTGTAGAACATCCCTAAAAGTACTGTAATTTTAAAGCTCCATAACATTGCTCATTTTTATTCGATTGATATGATTTTTAGTGTGTAAAATAGGAAATTTTAAGAGCTACACAACCAAATTTAATTTTTAAAACCTTAAAATGGTATGCCATTTGTAATACATCCCAAAAAGTACTGTGATTTTTTCAAAAAAAAACCGCACTAGTTTCAAAGTCTCATAACATTGCTCAGTTTTATCTGATTTCAATAAATTTTATTTCAAAACATAGCAAATTTGAAGAGCTACCCAACGATATCTAACTCATCAATTATCAAATTATCAAAAATCAAATTACAGGACTTCACCGCCATCATCCAACTACTCGTGCTCATCGCTCTTCACTATCGCGCTCCAATCCGCTTCCCAGACAACGTGGTAGCCAATGTTGTAGTTGCTCAAAAGGAGCACGGACAAGTGAAAACGCATCGAATCACGGAGCAAATCACGACTGTCCAAACCGAGCTCGCACCAAAAGGAACCCGCGATGCCTTCGATACACTTTTCGACTACGGACCCGACAAGTTGGCTCATGTGAAGACGTCGCTTTTGGCGTTCTGTAATAAGCATTTGAATAAGATCAATCTAGAAGTCTCGGATTTGGATTATCAATTCCAGGATGGTGTATTCTTGGTGCTTCTTGTTGGTCTC</canonical>
            <polymorphic>CTTTTTGATGGCCAGATTATTCAGAAGCTTTTGGAAAAGTTGGAACAGATTCGGGTGAGAAATTTGGCGGGAATTTGAAGTTTTGAATCTTTTATTTTCAGATCGAAGTTCCAGAAGTGTCCCAATCGGAGGAGGGACAACGTCAGAAGCTTCAAATTGTCATTCAAACAGCTAATAGAATTTTGGGGCAACCCAGAGATCAGGAGAAGTGGTCCGCTGATTTGATTCATCAGAAGGTAAGCAAATGTGCTCTATTGAAATGCTTTTAGCTCAAAAGATTGCTAACTTTAGAAGGCTCAAGATCATATGCAATTTGTAGAACATCCCTAAAAGTACTGTAATTTTAAAGCTCCATAACATTGCTCATTTTTATTCGATTGATATGATTTTTAGTGTGTAAAATAGGAAATTTTAAGAGCTACACAACCAAATTTAATTTTTAAAACCTTAAAATGGTATGCCATTTGTAATACATCCCAAAAAGTACTGTGATTTTTTCRAAAAAAAACCGCACTAGTTTCAAAGTCTCATAACATTGCTCAGTTTTATCTGATTTCAATAAATTTTATTTCAAAACATAGCAAATTTGAAGAGCTACCCAACGATATCTAACTCATCAATTATCAAATTATCAAAAATCAAATTACAGGACTTCACCGCCATCATCCAACTACTCGTGCTCATCGCTCTTCACTATCGCGCTCCAATCCGCTTCCCAGACAACGTGGTAGCCAATGTTGTAGTTGCTCAAAAGGAGCACGGACAAGTGAAAACGCATCGAATCACGGAGCAAATCACGACTGTCCAAACCGAGCTCGCACCAAAAGGAACCCGCGATGCCTTCGATACACTTTTCGACTACGGACCCGACAAGTTGGCTCATGTGAAGACGTCGCTTTTGGCGTTCTGTAATAAGCATTTGAATAAGATCAATCTAGAAGTCTCGGATTTGGATTATCAATTCCAGGATGGTGTATTCTTGGTGCTTCTTGTTGGTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAAATTTTAAGAGCTACACAA</pcr_primer_p1>
		<pcr_primer_p2>AAGTCCTGTAATTTGATTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGGAAATTTTAAGAGCTACACAACCAAATTTAATTTTTAAAACCTTAAAATGGTATGCCATTTGTAATACATCCCAAAAAGTACTGTGATTTTTTCAAAAAAAAACCGCACTAGTTTCAAAGTCTCATAACATTGCTCAGTTTTATCTGATTTCAATAAATTTTATTTCAAAACATAGCAAATTTGAAGAGCTACCCAACGATATCTAACTCATCAATTATCAAATTATCAAAAATCAAATTACAGGACTT</canonical_amplicon>
		<polymorphic_amplicon>AGGAAATTTTAAGAGCTACACAACCAAATTTAATTTTTAAAACCTTAAAATGGTATGCCATTTGTAATACATCCCAAAAAGTACTGTGATTTTTTCRAAAAAAAACCGCACTAGTTTCAAAGTCTCATAACATTGCTCAGTTTTATCTGATTTCAATAAATTTTATTTCAAAACATAGCAAATTTGAAGAGCTACCCAACGATATCTAACTCATCAATTATCAAATTATCAAAAATCAAATTACAGGACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30747</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>40016</contig_pos>
        <strand>+</strand>
        <context>CGCCGGGTCG[A/G]GCCGGGCCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGTTTTTTGAACATTTCGAAACTAATGAAATGACGGGCCCGCCGGGTCG</left_flank>
        <right_flank>GCCGGGCCTCCGAATTTCCGGAAAAAGCCCGGCCCGTTACAAGTATGTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGTTCCAAAAAAATGGAGGTCCGATGTTTGAAAAACACACAGATGCTTGAATGGCACTCATTCTCCTATTAGGCCACAAAACTTAAACTTCTTACACAGTACCATTGGTAGATTATTCCAACATCTGTGCGTTTTCTCAAATATCGGACCTCTAATTTTTCGGACCTCTATTTCATTTTGACACCATACTTGTAAAATTCCGGGCCGTTCCGCCAAAGCCCGGGCCCGGGCCGGGTTGGGTTTGAGGAAATTTTCAAGGCCCGGGCCCGGCCCGGAAGGCCCGGTGTCAAAAATTCTGTATTTTTGAGCCAAATATTGAGCTCTCAATATAATTTTTTTCCATTTTTCTTTCGTATTTCGGATTGTTTGTCTGTCTGATGAAAAAAGATCGAAAAACTCGAAAAAAAATTTTTTGGTCGAAAAAAATCACATAAGGGTCCCCCCTTATGTGTTTTTTGAACATTTCGAAACTAATGAAATGACGGGCCCGCCGGGTCGGGCCGGGCCTCCGAATTTCCGGAAAAAGCCCGGCCCGTTACAAGTATGTTTAACAGCTCTACATTTTTTCGCACCTCTATTATTTTTTGGGATCTCTAAACTTTCAAAAAGAGCAGAAATTTTTGAGTATCACGATTATAGGATACTCAGTACCTGGATTTTGGAACAGAACGCAGATACAATGTTGATGAATCAGTGTTGGACTTGGTGGAATTTTATAAAACAAATTGCGCAGAATTGTTTGAAAAGTGGTGGACTTGTAAAGTAAGAACTAAACATTTTTTAGATTTACAGCACTACGTTTCAGGCATCGGAGCTCAGCTTCTGTTTGAGTTGTTCGTCGTACTCGGATAGTCTGGAAGTCTGTGCTTTCTGTGAATTGTCGCATAGAATGAATGTGTTGAGGTCGAACCGGAAAATGTACTGCAGTGCACAATATCATCAAAATATGCCGTTATTCTTCAATTTCTCCAATTTGAAAACATTTCCAATCCGATGGCA</canonical>
            <polymorphic>AGGTTCCAAAAAAATGGAGGTCCGATGTTTGAAAAACACACAGATGCTTGAATGGCACTCATTCTCCTATTAGGCCACAAAACTTAAACTTCTTACACAGTACCATTGGTAGATTATTCCAACATCTGTGCGTTTTCTCAAATATCGGACCTCTAATTTTTCGGACCTCTATTTCATTTTGACACCATACTTGTAAAATTCCGGGCCGTTCCGCCAAAGCCCGGGCCCGGGCCGGGTTGGGTTTGAGGAAATTTTCAAGGCCCGGGCCCGGCCCGGAAGGCCCGGTGTCAAAAATTCTGTATTTTTGAGCCAAATATTGAGCTCTCAATATAATTTTTTTCCATTTTTCTTTCGTATTTCGGATTGTTTGTCTGTCTGATGAAAAAAGATCGAAAAACTCGAAAAAAAATTTTTTGGTCGAAAAAAATCACATAAGGGTCCCCCCTTATGTGTTTTTTGAACATTTCGAAACTAATGAAATGACGGGCCCGCCGGGTCGRGCCGGGCCTCCGAATTTCCGGAAAAAGCCCGGCCCGTTACAAGTATGTTTAACAGCTCTACATTTTTTCGCACCTCTATTATTTTTTGGGATCTCTAAACTTTCAAAAAGAGCAGAAATTTTTGAGTATCACGATTATAGGATACTCAGTACCTGGATTTTGGAACAGAACGCAGATACAATGTTGATGAATCAGTGTTGGACTTGGTGGAATTTTATAAAACAAATTGCGCAGAATTGTTTGAAAAGTGGTGGACTTGTAAAGTAAGAACTAAACATTTTTTAGATTTACAGCACTACGTTTCAGGCATCGGAGCTCAGCTTCTGTTTGAGTTGTTCGTCGTACTCGGATAGTCTGGAAGTCTGTGCTTTCTGTGAATTGTCGCATAGAATGAATGTGTTGAGGTCGAACCGGAAAATGTACTGCAGTGCACAATATCATCAAAATATGCCGTTATTCTTCAATTTCTCCAATTTGAAAACATTTCCAATCCGATGGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>468 207 131 74 29 26 20 14 9 6 6 5 5</canonical_bands>
                <polymorphic_bands>468 207 131 74 29 26 20 19 9 6 6 5</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>260 180 166 131 74 29 29 23 21 14 14 12 9 6 6 6 5 5 5 5</canonical_bands>
                <polymorphic_bands>260 180 166 131 74 29 29 23 21 19 14 12 9 6 6 6 5 5 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>466 158 128 48 40 30 27 22 20 16 14 9 6 6 5 5</canonical_bands>
                <polymorphic_bands>466 158 128 48 40 30 27 22 20 19 16 9 6 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTTTGTCTGTCTGATGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TCCTATAATCGTGATACTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>279</pcr_amplicon_size>
		<canonical_amplicon>TTGTTTGTCTGTCTGATGAAAAAAGATCGAAAAACTCGAAAAAAAATTTTTTGGTCGAAAAAAATCACATAAGGGTCCCCCCTTATGTGTTTTTTGAACATTTCGAAACTAATGAAATGACGGGCCCGCCGGGTCGGGCCGGGCCTCCGAATTTCCGGAAAAAGCCCGGCCCGTTACAAGTATGTTTAACAGCTCTACATTTTTTCGCACCTCTATTATTTTTTGGGATCTCTAAACTTTCAAAAAGAGCAGAAATTTTTGAGTATCACGATTATAGGA</canonical_amplicon>
		<polymorphic_amplicon>TTGTTTGTCTGTCTGATGAAAAAAGATCGAAAAACTCGAAAAAAAATTTTTTGGTCGAAAAAAATCACATAAGGGTCCCCCCTTATGTGTTTTTTGAACATTTCGAAACTAATGAAATGACGGGCCCGCCGGGTCGRGCCGGGCCTCCGAATTTCCGGAAAAAGCCCGGCCCGTTACAAGTATGTTTAACAGCTCTACATTTTTTCGCACCTCTATTATTTTTTGGGATCTCTAAACTTTCAAAAAGAGCAGAAATTTTTGAGTATCACGATTATAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30748</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>118556</contig_pos>
        <strand>+</strand>
        <context>CTTCTTTCAT[A/G]AAAAAAARGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACACATACAAATGGAAGCATTGACCTGTAATTTTTGTTGCTTCTTTCAT</left_flank>
        <right_flank>AAAAAAAAGCAAATTCTTACTTCCAAAGGGTTTCTGTTTGGCACACACTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAATCAAGTTTTCCTTTGTTTGAGTGGTGATGGCTCCCGCATCTTTCAAGTCCTTAAAGTAAAAAAAATATATAATTCTATGACTCATTAATAGTATTACACTCAATCCAAACGCCTCTTCAGTCTCTGTAATTTCTGTTGTAGGTGGGTCAGTTACAGAGTAAACTGTATAGTTGTTCGGGTTCCACCATCTAATCTCATCCTTTGGATGAACCATGCAGTGATGAGAAATTGATTGGCATAGACAAGGCAATGGATTGTGATTCTTGGCAATATTTTTTGCAGCGTTCGGGCCATCTGGATCTGGACAAGTGTTGGAAATAGAGCAACCGGAACATTTCTAAAAATTGAAGATTTCAGAAAAAAATCAAGATTCGAAAAGTACCTTTACAGTCCAGACTGATGTTGGATAGCATGGCCATATCAGACCCCGTGTTACATCTTCGAAACACATACAAATGGAAGCATTGACCTGTAATTTTTGTTGCTTCTTTCATAAAAAAAAAGCAAATTCTTACTTCCAAAGGGTTTCTGTTTGGCACACACTGTTCCATATTCATACACGTACACCTAACAAACACTGGCTGATATTCTGCCCCTTCTAAGTCTTCGTCATCTATTGGAAATAACAAATCACTTCTATCTTTTGCTCTCTTTCTGGAAATGTCAAAAGTGAAACCTTACTGTTTCTGAGAAACTCACTTTCTGACACTAATGGCTTCCAGAATCTCTCCTCCCGGTTTCATACTATCGCTCATCATTCTGGCATTGATCACTCGCTCCCAATAATCGAACTAAACGATTGAGTATAGATTTCTCTTGTCATTTTCGAACGTTCTCTACTTACACCTTCCTTGATCTCATCATATTGAATTAGTTCACTGTACTTGAAAGCGTTCAGATTGCATACTGTCGCTGCTGGGAATGCCGCTGAAAGGGAGTTTTTCAATACAGTGCGGTCAATATCTTTAAGACCCCCCTTGATTTTGGGCGCACAG</canonical>
            <polymorphic>GAAAATCAAGTTTTCCTTTGTTTGAGTGGTGATGGCTCCCGCATCTTTCAAGTCCTTAAAGTAAAAAAAATATATAATTCTATGACTCATTAATAGTATTACACTCAATCCAAACGCCTCTTCAGTCTCTGTAATTTCTGTTGTAGGTGGGTCAGTTACAGAGTAAACTGTATAGTTGTTCGGGTTCCACCATCTAATCTCATCCTTTGGATGAACCATGCAGTGATGAGAAATTGATTGGCATAGACAAGGCAATGGATTGTGATTCTTGGCAATATTTTTTGCAGCGTTCGGGCCATCTGGATCTGGACAAGTGTTGGAAATAGAGCAACCGGAACATTTCTAAAAATTGAAGATTTCAGAAAAAAATCAAGATTCGAAAAGTACCTTTACAGTCCAGACTGATGTTGGATAGCATGGCCATATCAGACCCCGTGTTACATCTTCGAAACACATACAAATGGAAGCATTGACCTGTAATTTTTGTTGCTTCTTTCATRAAAAAAAAGCAAATTCTTACTTCCAAAGGGTTTCTGTTTGGCACACACTGTTCCATATTCATACACGTACACCTAACAAACACTGGCTGATATTCTGCCCCTTCTAAGTCTTCGTCATCTATTGGAAATAACAAATCACTTCTATCTTTTGCTCTCTTTCTGGAAATGTCAAAAGTGAAACCTTACTGTTTCTGAGAAACTCACTTTCTGACACTAATGGCTTCCAGAATCTCTCCTCCCGGTTTCATACTATCGCTCATCATTCTGGCATTGATCACTCGCTCCCAATAATCGAACTAAACGATTGAGTATAGATTTCTCTTGTCATTTTCGAACGTTCTCTACTTACACCTTCCTTGATCTCATCATATTGAATTAGTTCACTGTACTTGAAAGCGTTCAGATTGCATACTGTCGCTGCTGGGAATGCCGCTGAAAGGGAGTTTTTCAATACAGTGCGGTCAATATCTTTAAGACCCCCCTTGATTTTGGGCGCACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACATCTTCGAAACACATACAAA</pcr_primer_p1>
		<pcr_primer_p2>CAGTAAGGTTTCACTTTTGACAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACATCTTCGAAACACATACAAATGGAAGCATTGACCTGTAATTTTTGTTGCTTCTTTCATAAAAAAAAAGCAAATTCTTACTTCCAAAGGGTTTCTGTTTGGCACACACTGTTCCATATTCATACACGTACACCTAACAAACACTGGCTGATATTCTGCCCCTTCTAAGTCTTCGTCATCTATTGGAAATAACAAATCACTTCTATCTTTTGCTCTCTTTCTGGAAATGTCAAAAGTGAAACCTTACTG</canonical_amplicon>
		<polymorphic_amplicon>TACATCTTCGAAACACATACAAATGGAAGCATTGACCTGTAATTTTTGTTGCTTCTTTCATRAAAAAAAAGCAAATTCTTACTTCCAAAGGGTTTCTGTTTGGCACACACTGTTCCATATTCATACACGTACACCTAACAAACACTGGCTGATATTCTGCCCCTTCTAAGTCTTCGTCATCTATTGGAAATAACAAATCACTTCTATCTTTTGCTCTCTTTCTGGAAATGTCAAAAGTGAAACCTTACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30749</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>118564</contig_pos>
        <strand></strand>
        <context>ATRAAAAAAA[A/G]GCAAATTCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAATGGAAGCATTGACCTGTAATTTTTGTTGCTTCTTTCATAAAAAAAA</left_flank>
        <right_flank>GCAAATTCTTACTTCCAAAGGGTTTCTGTTTGGCACACACTGTTCCATAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTTTCCTTTGTTTGAGTGGTGATGGCTCCCGCATCTTTCAAGTCCTTAAAGTAAAAAAAATATATAATTCTATGACTCATTAATAGTATTACACTCAATCCAAACGCCTCTTCAGTCTCTGTAATTTCTGTTGTAGGTGGGTCAGTTACAGAGTAAACTGTATAGTTGTTCGGGTTCCACCATCTAATCTCATCCTTTGGATGAACCATGCAGTGATGAGAAATTGATTGGCATAGACAAGGCAATGGATTGTGATTCTTGGCAATATTTTTTGCAGCGTTCGGGCCATCTGGATCTGGACAAGTGTTGGAAATAGAGCAACCGGAACATTTCTAAAAATTGAAGATTTCAGAAAAAAATCAAGATTCGAAAAGTACCTTTACAGTCCAGACTGATGTTGGATAGCATGGCCATATCAGACCCCGTGTTACATCTTCGAAACACATACAAATGGAAGCATTGACCTGTAATTTTTGTTGCTTCTTTCATAAAAAAAAAGCAAATTCTTACTTCCAAAGGGTTTCTGTTTGGCACACACTGTTCCATATTCATACACGTACACCTAACAAACACTGGCTGATATTCTGCCCCTTCTAAGTCTTCGTCATCTATTGGAAATAACAAATCACTTCTATCTTTTGCTCTCTTTCTGGAAATGTCAAAAGTGAAACCTTACTGTTTCTGAGAAACTCACTTTCTGACACTAATGGCTTCCAGAATCTCTCCTCCCGGTTTCATACTATCGCTCATCATTCTGGCATTGATCACTCGCTCCCAATAATCGAACTAAACGATTGAGTATAGATTTCTCTTGTCATTTTCGAACGTTCTCTACTTACACCTTCCTTGATCTCATCATATTGAATTAGTTCACTGTACTTGAAAGCGTTCAGATTGCATACTGTCGCTGCTGGGAATGCCGCTGAAAGGGAGTTTTTCAATACAGTGCGGTCAATATCTTTAAGACCCCCCTTGATTTTGGGCGCACAGAAAAAACT</canonical>
            <polymorphic>AGTTTTCCTTTGTTTGAGTGGTGATGGCTCCCGCATCTTTCAAGTCCTTAAAGTAAAAAAAATATATAATTCTATGACTCATTAATAGTATTACACTCAATCCAAACGCCTCTTCAGTCTCTGTAATTTCTGTTGTAGGTGGGTCAGTTACAGAGTAAACTGTATAGTTGTTCGGGTTCCACCATCTAATCTCATCCTTTGGATGAACCATGCAGTGATGAGAAATTGATTGGCATAGACAAGGCAATGGATTGTGATTCTTGGCAATATTTTTTGCAGCGTTCGGGCCATCTGGATCTGGACAAGTGTTGGAAATAGAGCAACCGGAACATTTCTAAAAATTGAAGATTTCAGAAAAAAATCAAGATTCGAAAAGTACCTTTACAGTCCAGACTGATGTTGGATAGCATGGCCATATCAGACCCCGTGTTACATCTTCGAAACACATACAAATGGAAGCATTGACCTGTAATTTTTGTTGCTTCTTTCATAAAAAAAARGCAAATTCTTACTTCCAAAGGGTTTCTGTTTGGCACACACTGTTCCATATTCATACACGTACACCTAACAAACACTGGCTGATATTCTGCCCCTTCTAAGTCTTCGTCATCTATTGGAAATAACAAATCACTTCTATCTTTTGCTCTCTTTCTGGAAATGTCAAAAGTGAAACCTTACTGTTTCTGAGAAACTCACTTTCTGACACTAATGGCTTCCAGAATCTCTCCTCCCGGTTTCATACTATCGCTCATCATTCTGGCATTGATCACTCGCTCCCAATAATCGAACTAAACGATTGAGTATAGATTTCTCTTGTCATTTTCGAACGTTCTCTACTTACACCTTCCTTGATCTCATCATATTGAATTAGTTCACTGTACTTGAAAGCGTTCAGATTGCATACTGTCGCTGCTGGGAATGCCGCTGAAAGGGAGTTTTTCAATACAGTGCGGTCAATATCTTTAAGACCCCCCTTGATTTTGGGCGCACAGAAAAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACATCTTCGAAACACATACAAA</pcr_primer_p1>
		<pcr_primer_p2>CAGTAAGGTTTCACTTTTGACAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACATCTTCGAAACACATACAAATGGAAGCATTGACCTGTAATTTTTGTTGCTTCTTTCATAAAAAAAAAGCAAATTCTTACTTCCAAAGGGTTTCTGTTTGGCACACACTGTTCCATATTCATACACGTACACCTAACAAACACTGGCTGATATTCTGCCCCTTCTAAGTCTTCGTCATCTATTGGAAATAACAAATCACTTCTATCTTTTGCTCTCTTTCTGGAAATGTCAAAAGTGAAACCTTACTG</canonical_amplicon>
		<polymorphic_amplicon>TACATCTTCGAAACACATACAAATGGAAGCATTGACCTGTAATTTTTGTTGCTTCTTTCATAAAAAAAARGCAAATTCTTACTTCCAAAGGGTTTCTGTTTGGCACACACTGTTCCATATTCATACACGTACACCTAACAAACACTGGCTGATATTCTGCCCCTTCTAAGTCTTCGTCATCTATTGGAAATAACAAATCACTTCTATCTTTTGCTCTCTTTCTGGAAATGTCAAAAGTGAAACCTTACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30750</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>168036</contig_pos>
        <strand></strand>
        <context>ttccaaacaa[A/G]tcagaaaata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTCTCAATCACTATTGCCTTAGGACAACTTGACAATTTCCAAACAA</left_flank>
        <right_flank>TCAGAAAATAAAGTTTTTCTAAATCTAAAAAATTTCATAAAGCGGATGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAATATTTGATTTGTTTAAATCTAGACAAAACGTATTGGTATGGGAAAAGGGAGATGAAATAAAGGAACGTTCGTTGGCTAGTTGGCACATGAGGAAAGAGAAAATGGAAGAGACCGAGAGGAGAGAATCAAGAGAATATCGTGCGAGAGTGGAGAGACTCAGGAAATTGGGCGAGAAAAAGAGGGTAAAATTGGATAGAAGCGGCGAGTTCTTCATCTGGATGGGTTGACGAAAAAGAAAGAGTATAAGGAGATGGAGAAGATGTGAATTGACTGATGGAGCAATAGCGGAAATATAAGAAAGAAAATTTGGCCTGGATAAAGAAGCAGAAAGAGGAAACAGATATAAGCTGTTATTCTGATTCAAAAATAGGAGGTATAGACGAGAATAGCTTGTGGGCGTGTCCGAAAGTCCCCGTACCGAAAACTACCGTAGCCCAAAAATTTTTTTTTCTCAATCACTATTGCCTTAGGACAACTTGACAATTTCCAAACAAATCAGAAAATAAAGTTTTTCTAAATCTAAAAAATTTCATAAAGCGGATGAAAGTCAAGGAAACAAAATTAAAATACTCTAAAACGGGCTGGAGCTACCTGGTACAAAAAATTATATTTAAAAAAACCCTGTGGTGGCCCGAGAATATTTTGTGTCTTCTAGGGAATAATAGTTCTGAGAAGTTTTGCAATAATCCAGATCAACCTGAAACAAGTTTCAAGAAACCCTCAGTTTCTGTTTTTGTTGCCTTCGAGTTATTTCAATTTAGATTTTTTTTTCTTTTATTTCGCAACAAAAAATTTCCACCCATCCAATATTTGTTCGTTCGAAAAATTTCGTTAACCGATATCGGTCACTGATAAGAGACACTCGGTTTTTTCCTTTTCCATCAGTTTATCAGAACAAATAATATTTTTTTCAAGTTTGAAACATGGACCTGATTTCTACTATTAACCAGGAATCATGCATGAAATATGTTGTTGTTCGTTGGAAAAATCTTGAG</canonical>
            <polymorphic>AACAATATTTGATTTGTTTAAATCTAGACAAAACGTATTGGTATGGGAAAAGGGAGATGAAATAAAGGAACGTTCGTTGGCTAGTTGGCACATGAGGAAAGAGAAAATGGAAGAGACCGAGAGGAGAGAATCAAGAGAATATCGTGCGAGAGTGGAGAGACTCAGGAAATTGGGCGAGAAAAAGAGGGTAAAATTGGATAGAAGCGGCGAGTTCTTCATCTGGATGGGTTGACGAAAAAGAAAGAGTATAAGGAGATGGAGAAGATGTGAATTGACTGATGGAGCAATAGCGGAAATATAAGAAAGAAAATTTGGCCTGGATAAAGAAGCAGAAAGAGGAAACAGATATAAGCTGTTATTCTGATTCAAAAATAGGAGGTATAGACGAGAATAGCTTGTGGGCGTGTCCGAAAGTCCCCGTACCGAAAACTACCGTAGCCCAAAAATTTTTTTTTCTCAATCACTATTGCCTTAGGACAACTTGACAATTTCCAAACAARTCAGAAAATAAAGTTTTTCTAAATCTAAAAAATTTCATAAAGCGGATGAAAGTCAAGGAAACAAAATTAAAATACTCTAAAACGGGCTGGAGCTACCTGGTACAAAAAATTATATTTAAAAAAACCCTGTGGTGGCCCGAGAATATTTTGTGTCTTCTAGGGAATAATAGTTCTGAGAAGTTTTGCAATAATCCAGATCAACCTGAAACAAGTTTCAAGAAACCCTCAGTTTCTGTTTTTGTTGCCTTCGAGTTATTTCAATTTAGATTTTTTTTTCTTTTATTTCGCAACAAAAAATTTCCACCCATCCAATATTTGTTCGTTCGAAAAATTTCGTTAACCGATATCGGTCACTGATAAGAGACACTCGGTTTTTTCCTTTTCCATCAGTTTATCAGAACAAATAATATTTTTTTCAAGTTTGAAACATGGACCTGATTTCTACTATTAACCAGGAATCATGCATGAAATATGTTGTTGTTCGTTGGAAAAATCTTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGAAAGAGGAAACAGATATAA</pcr_primer_p1>
		<pcr_primer_p2>ATTATTCCCTAGAAGACACAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>340</pcr_amplicon_size>
		<canonical_amplicon>GCAGAAAGAGGAAACAGATATAAGCTGTTATTCTGATTCAAAAATAGGAGGTATAGACGAGAATAGCTTGTGGGCGTGTCCGAAAGTCCCCGTACCGAAAACTACCGTAGCCCAAAAATTTTTTTTTCTCAATCACTATTGCCTTAGGACAACTTGACAATTTCCAAACAAATCAGAAAATAAAGTTTTTCTAAATCTAAAAAATTTCATAAAGCGGATGAAAGTCAAGGAAACAAAATTAAAATACTCTAAAACGGGCTGGAGCTACCTGGTACAAAAAATTATATTTAAAAAAACCCTGTGGTGGCCCGAGAATATTTTGTGTCTTCTAGGGAATAAT</canonical_amplicon>
		<polymorphic_amplicon>GCAGAAAGAGGAAACAGATATAAGCTGTTATTCTGATTCAAAAATAGGAGGTATAGACGAGAATAGCTTGTGGGCGTGTCCGAAAGTCCCCGTACCGAAAACTACCGTAGCCCAAAAATTTTTTTTTCTCAATCACTATTGCCTTAGGACAACTTGACAATTTCCAAACAARTCAGAAAATAAAGTTTTTCTAAATCTAAAAAATTTCATAAAGCGGATGAAAGTCAAGGAAACAAAATTAAAATACTCTAAAACGGGCTGGAGCTACCTGGTACAAAAAATTATATTTAAAAAAACCCTGTGGTGGCCCGAGAATATTTTGTGTCTTCTAGGGAATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30751</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>208708</contig_pos>
        <strand>+</strand>
        <context>TCTCGATTTC[A/C]GAACTATCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCAAGAAAATGAAACTATCCGACTGGGACTTTCTTGAAGATCTCGATTTC</left_flank>
        <right_flank>GAACTATCTACAGATACCCATACGAAAGCGATGATGATCTGAAGATGTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTATCAACACATTGGAGACGATTTCACTGACTTCTTTTTCACCGGGAAGCGTGCGATGGAAATCGATTCAATCATTCATGGTGTTTGTGGACATGGCAACGACGTTTGGCAGGACAGAAATCTAGGAGACGTTCTTTGGCTTACTGATTCACCCTGCTGGAACAACGGTATGAAAAGTAAAATTGCAATAAATCCCATTTAATTTTCACAGGCTGGATGTTCTCTCGTTCCTTTATGAAGCGTTCACACAACTTGATGATGATTCGCCCGGAAGTTTCGAGAGTTGGTCATTCACAGAGATCAGTCACTCAGGATAGCTCCTGGAACATCGACTTATTCAATCCTCTTCTCATCAGACACGAAGAATTTCTGCAGCGTTTTCATCTCGATCTCTCGGTATGACACTATTCATTAAAACATAATTACAATGCCATTCTTTTCAGCACTCCAAGAAAATGAAACTATCCGACTGGGACTTTCTTGAAGATCTCGATTTCAGAACTATCTACAGATACCCATACGAAAGCGATGATGATCTGAAGATGTATTTCAGAAACTCGAACATTCAGGTTTGTAAAAATTTTCATTCGCCAAATCTTACATACTCTTTTTTTTCAGAAGCTCTACATGTTCAGAAAAATCATTCCAATCAGCATTGACCATCGTAGAGCTTATATCGTTCCGAAGAACCAAATGGATCACTATTAGCCAATTCAAATGCCATTTATCCGTTTGTCCTGTTGCTTTTTCTGTTACCGTTGTTTTACATTGTTGAACTGTTTGTTATGTTTGTCATTTTTTAAATAAACGAAAATCAAAAAATCAAATGCATATTTCAAGAAGATATCGCTGGAAGTTCAAGAGCTTCAGCTTCGAATTCCGTCTCGGAGCATATTATCGAATTCAAAGAAACTGGCACCTGAGAATTTGCAAGCCATAAAATTTCAAACGTTCGCCTCGTTCGGCCATTTCCGCAATTTTATTAGCTAACGTTGTCC</canonical>
            <polymorphic>GATTATCAACACATTGGAGACGATTTCACTGACTTCTTTTTCACCGGGAAGCGTGCGATGGAAATCGATTCAATCATTCATGGTGTTTGTGGACATGGCAACGACGTTTGGCAGGACAGAAATCTAGGAGACGTTCTTTGGCTTACTGATTCACCCTGCTGGAACAACGGTATGAAAAGTAAAATTGCAATAAATCCCATTTAATTTTCACAGGCTGGATGTTCTCTCGTTCCTTTATGAAGCGTTCACACAACTTGATGATGATTCGCCCGGAAGTTTCGAGAGTTGGTCATTCACAGAGATCAGTCACTCAGGATAGCTCCTGGAACATCGACTTATTCAATCCTCTTCTCATCAGACACGAAGAATTTCTGCAGCGTTTTCATCTCGATCTCTCGGTATGACACTATTCATTAAAACATAATTACAATGCCATTCTTTTCAGCACTCCAAGAAAATGAAACTATCCGACTGGGACTTTCTTGAAGATCTCGATTTCMGAACTATCTACAGATACCCATACGAAAGCGATGATGATCTGAAGATGTATTTCAGAAACTCGAACATTCAGGTTTGTAAAAATTTTCATTCGCCAAATCTTACATACTCTTTTTTTTCAGAAGCTCTACATGTTCAGAAAAATCATTCCAATCAGCATTGACCATCGTAGAGCTTATATCGTTCCGAAGAACCAAATGGATCACTATTAGCCAATTCAAATGCCATTTATCCGTTTGTCCTGTTGCTTTTTCTGTTACCGTTGTTTTACATTGTTGAACTGTTTGTTATGTTTGTCATTTTTTAAATAAACGAAAATCAAAAAATCAAATGCATATTTCAAGAAGATATCGCTGGAAGTTCAAGAGCTTCAGCTTCGAATTCCGTCTCGGAGCATATTATCGAATTCAAAGAAACTGGCACCTGAGAATTTGCAAGCCATAAAATTTCAAACGTTCGCCTCGTTCGGCCATTTCCGCAATTTTATTAGCTAACGTTGTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTCTCGGTATGACACTATTCA</pcr_primer_p1>
		<pcr_primer_p2>GAACATGTAGAGCTTCTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATCTCTCGGTATGACACTATTCATTAAAACATAATTACAATGCCATTCTTTTCAGCACTCCAAGAAAATGAAACTATCCGACTGGGACTTTCTTGAAGATCTCGATTTCAGAACTATCTACAGATACCCATACGAAAGCGATGATGATCTGAAGATGTATTTCAGAAACTCGAACATTCAGGTTTGTAAAAATTTTCATTCGCCAAATCTTACATACTCTTTTTTTTCAGAAGCTCTACATGTTC</canonical_amplicon>
		<polymorphic_amplicon>ATCTCTCGGTATGACACTATTCATTAAAACATAATTACAATGCCATTCTTTTCAGCACTCCAAGAAAATGAAACTATCCGACTGGGACTTTCTTGAAGATCTCGATTTCMGAACTATCTACAGATACCCATACGAAAGCGATGATGATCTGAAGATGTATTTCAGAAACTCGAACATTCAGGTTTGTAAAAATTTTCATTCGCCAAATCTTACATACTCTTTTTTTTCAGAAGCTCTACATGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30752</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>210140</contig_pos>
        <strand>+</strand>
        <context>ATGTACTCAT[C/T]TGAATATTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATATTAGTATTCTAAGAATAGGAGAGTTTACTTACTTCATGTACTCAT</left_flank>
        <right_flank>TGAATATTCATCAGGTTGTCCGAAGTAAAATACAAGCGAACCATAAACTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGGCTAGACTGTCAATGGGTGGATATAAACTCAAAGCAGCATAAATCCAACCAGTTTGAAAATGCATTTCCATATCTAAAAGAGGACAAAATAGAACGAAGAAAGCTGGAAAAACAAAAAGAATAGTTGGAACTACAGTTTGGACGATCAATGCTCGAAAGAATTGTTTTTGTAGTTTCTTGTTGGGAATCGAACATCTCGCGAATTCCCGTGTCATGAATATGTGCATACGAAGACCGCAGTAAATGATGATAATATACTGGACAGCCACATTAAACCCGCCCAATATCAGAAACAAAACATTTATTCTTACTGATCCATCGGAATCCTAAAAACACGATTCTAAGGTTGGCCTAAGTATTTGACAATGACTCACATATGGGATCATAAGAATACGTGGCAACTCATCCACCACTAAACCATATGTTTGTATCATCTCTTCTCTGGAAAATATTAGTATTCTAAGAATAGGAGAGTTTACTTACTTCATGTACTCATCTGAATATTCATCAGGTTGTCCGAAGTAAAATACAAGCGAACCATAAACTAAACCGCAGAAGAGTGAGTACAGTAACCAAACGCCTACTCCTTTCCCACTGAATTTTTTCGCAATTTTAGGATTAACAAGTGTATAGTAACGGAATAAAAACTGAACAGCAATTAGAGAAACCATCCAAAGGTAGAAGCTGGCGTAGATGACAAGTGCCACTTGAAGAAATTTTTGAGGAACTTCTAGCCATGTATTCAGGCTGAAGAATATGAAACCTTTATTGTAATTGTGAACAAATGGACGAGCTATAAGTTCCCAAGAAGAAAACATAATTCCAATCGTTGAAAATATAAGAACCATTGCCTTGTATGTTCCAGTGACTCTTTTGATATGGAAAACTGTTAGAAAAATGAGATATGAGTTTACAATAGTGACACTTGTAAATCCACATTTTGTGAATGTATCCATAACTTCGTAAAACCGCATTATAGCTGACGATAACGAAGTAA</canonical>
            <polymorphic>AAGGCTAGACTGTCAATGGGTGGATATAAACTCAAAGCAGCATAAATCCAACCAGTTTGAAAATGCATTTCCATATCTAAAAGAGGACAAAATAGAACGAAGAAAGCTGGAAAAACAAAAAGAATAGTTGGAACTACAGTTTGGACGATCAATGCTCGAAAGAATTGTTTTTGTAGTTTCTTGTTGGGAATCGAACATCTCGCGAATTCCCGTGTCATGAATATGTGCATACGAAGACCGCAGTAAATGATGATAATATACTGGACAGCCACATTAAACCCGCCCAATATCAGAAACAAAACATTTATTCTTACTGATCCATCGGAATCCTAAAAACACGATTCTAAGGTTGGCCTAAGTATTTGACAATGACTCACATATGGGATCATAAGAATACGTGGCAACTCATCCACCACTAAACCATATGTTTGTATCATCTCTTCTCTGGAAAATATTAGTATTCTAAGAATAGGAGAGTTTACTTACTTCATGTACTCATYTGAATATTCATCAGGTTGTCCGAAGTAAAATACAAGCGAACCATAAACTAAACCGCAGAAGAGTGAGTACAGTAACCAAACGCCTACTCCTTTCCCACTGAATTTTTTCGCAATTTTAGGATTAACAAGTGTATAGTAACGGAATAAAAACTGAACAGCAATTAGAGAAACCATCCAAAGGTAGAAGCTGGCGTAGATGACAAGTGCCACTTGAAGAAATTTTTGAGGAACTTCTAGCCATGTATTCAGGCTGAAGAATATGAAACCTTTATTGTAATTGTGAACAAATGGACGAGCTATAAGTTCCCAAGAAGAAAACATAATTCCAATCGTTGAAAATATAAGAACCATTGCCTTGTATGTTCCAGTGACTCTTTTGATATGGAAAACTGTTAGAAAAATGAGATATGAGTTTACAATAGTGACACTTGTAAATCCACATTTTGTGAATGTATCCATAACTTCGTAAAACCGCATTATAGCTGACGATAACGAAGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>479 292 177 32 20</canonical_bands>
                <polymorphic_bands>479 292 197 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATATGGGATCATAAGAATACG</pcr_primer_p1>
		<pcr_primer_p2>GTTAATCCTAAAATTGCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACATATGGGATCATAAGAATACGTGGCAACTCATCCACCACTAAACCATATGTTTGTATCATCTCTTCTCTGGAAAATATTAGTATTCTAAGAATAGGAGAGTTTACTTACTTCATGTACTCATCTGAATATTCATCAGGTTGTCCGAAGTAAAATACAAGCGAACCATAAACTAAACCGCAGAAGAGTGAGTACAGTAACCAAACGCCTACTCCTTTCCCACTGAATTTTTTCGCAATTTTAGGATTAAC</canonical_amplicon>
		<polymorphic_amplicon>ACATATGGGATCATAAGAATACGTGGCAACTCATCCACCACTAAACCATATGTTTGTATCATCTCTTCTCTGGAAAATATTAGTATTCTAAGAATAGGAGAGTTTACTTACTTCATGTACTCATYTGAATATTCATCAGGTTGTCCGAAGTAAAATACAAGCGAACCATAAACTAAACCGCAGAAGAGTGAGTACAGTAACCAAACGCCTACTCCTTTCCCACTGAATTTTTTCGCAATTTTAGGATTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30753</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>219306</contig_pos>
        <strand></strand>
        <context>ctatcaaaga[G/T]atcaaaaatg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCACTTTATACTTGCACTTTGAGCTCAAGTATCTCCATTTCTATCAAAGA</left_flank>
        <right_flank>ATCAAAAATGAGTCAACTGATATGATATTTGTCATAATAGCACCAAAATT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCACTAAACCCGATAAAATTGGTTTTCAATTTGATCGAAAAACTCACTGATAGAATAATAGTCGTATAATTGTCCATAATAGGAGCTCTCGGCTAGATCTACTTTTCCAAATTGGTCGTACGCCTCTGAAGGAATGATTTTTAGAAGAAACTATGGACTACAAGGTCTTACCGCGATCAATATTATGCCATAGAATCGTGATATGCTCATCTCTATCCCACCGTTCGTGTTCGTGATAGAAACCAACTGAATGCATCAGCTCGTGAATTGCAGTGTCATACTGGAATTAATAAGATCAATGCTCTAGAAATCGAGGAAAAAGAACCTGCAAACAACCATTGTCTAATGATAGTTCTTGTCGTCCACCAGCTCTTCCAACGTCCGAATAGCAACTGAAAAATGTTGAAAGTTTCCCCAAAAAGTGACTTCCGTAAACACTCAGTAGAAGACCACTTTATACTTGCACTTTGAGCTCAAGTATCTCCATTTCTATCAAAGAGATCAAAAATGAGTCAACTGATATGATATTTGTCATAATAGCACCAAAATTTTATCAGTTGACAAATTTTTGATTCATCGTATAGAAATTGGGATAAATGAACTTACAGTGCAATTATAACTTCTAAACTAACCCATCAATCTTTCCAATATACAAATAGTCATTATCTACAGCTGTTCGTGGAACAAATCTCACACAGGTCTTGTCGTGATATGCCTGTGAAAATGTAGAAACATTTTTAGTTTCAGTTATTCCAGGTTAAAGTTTGTCTCACCTGAAAACTTCTTGCCAAAACTGCTCTTTCTCTATCATTATACTGATTCGATATCACGTATGGAATCCTGCCGTTCGGCCATTTTCTTGTTCCAGTTATCACACCGTTCCTTCGCAAACTCTCACTGTTTTTTGAATCCTAAACTTATGATTTTTATTTCAAAATCCAAACTTCGAACATTCAACAAAATCGCATATTCACCCCAATCCTTTTTGACAAAAAAACGT</canonical>
            <polymorphic>GCACTAAACCCGATAAAATTGGTTTTCAATTTGATCGAAAAACTCACTGATAGAATAATAGTCGTATAATTGTCCATAATAGGAGCTCTCGGCTAGATCTACTTTTCCAAATTGGTCGTACGCCTCTGAAGGAATGATTTTTAGAAGAAACTATGGACTACAAGGTCTTACCGCGATCAATATTATGCCATAGAATCGTGATATGCTCATCTCTATCCCACCGTTCGTGTTCGTGATAGAAACCAACTGAATGCATCAGCTCGTGAATTGCAGTGTCATACTGGAATTAATAAGATCAATGCTCTAGAAATCGAGGAAAAAGAACCTGCAAACAACCATTGTCTAATGATAGTTCTTGTCGTCCACCAGCTCTTCCAACGTCCGAATAGCAACTGAAAAATGTTGAAAGTTTCCCCAAAAAGTGACTTCCGTAAACACTCAGTAGAAGACCACTTTATACTTGCACTTTGAGCTCAAGTATCTCCATTTCTATCAAAGAKATCAAAAATGAGTCAACTGATATGATATTTGTCATAATAGCACCAAAATTTTATCAGTTGACAAATTTTTGATTCATCGTATAGAAATTGGGATAAATGAACTTACAGTGCAATTATAACTTCTAAACTAACCCATCAATCTTTCCAATATACAAATAGTCATTATCTACAGCTGTTCGTGGAACAAATCTCACACAGGTCTTGTCGTGATATGCCTGTGAAAATGTAGAAACATTTTTAGTTTCAGTTATTCCAGGTTAAAGTTTGTCTCACCTGAAAACTTCTTGCCAAAACTGCTCTTTCTCTATCATTATACTGATTCGATATCACGTATGGAATCCTGCCGTTCGGCCATTTTCTTGTTCCAGTTATCACACCGTTCCTTCGCAAACTCTCACTGTTTTTTGAATCCTAAACTTATGATTTTTATTTCAAAATCCAAACTTCGAACATTCAACAAAATCGCATATTCACCCCAATCCTTTTTGACAAAAAAACGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>501 206 119 79 63 32</canonical_bands>
                <polymorphic_bands>707 119 79 63 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAACTGAAAAATGTTGAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GATTGATGGGTTAGTTTAGAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GCAACTGAAAAATGTTGAAAGTTTCCCCAAAAAGTGACTTCCGTAAACACTCAGTAGAAGACCACTTTATACTTGCACTTTGAGCTCAAGTATCTCCATTTCTATCAAAGAGATCAAAAATGAGTCAACTGATATGATATTTGTCATAATAGCACCAAAATTTTATCAGTTGACAAATTTTTGATTCATCGTATAGAAATTGGGATAAATGAACTTACAGTGCAATTATAACTTCTAAACTAACCCATCAATC</canonical_amplicon>
		<polymorphic_amplicon>GCAACTGAAAAATGTTGAAAGTTTCCCCAAAAAGTGACTTCCGTAAACACTCAGTAGAAGACCACTTTATACTTGCACTTTGAGCTCAAGTATCTCCATTTCTATCAAAGAKATCAAAAATGAGTCAACTGATATGATATTTGTCATAATAGCACCAAAATTTTATCAGTTGACAAATTTTTGATTCATCGTATAGAAATTGGGATAAATGAACTTACAGTGCAATTATAACTTCTAAACTAACCCATCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30754</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>219338</contig_pos>
        <strand></strand>
        <context>atgatatttg[T/G]cataatakca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CTCCATTTCTATCAAAGAGATCAAAAATGAGTCAACTGATATGATATTTG</left_flank>
        <right_flank>CATAATAGCACCAAAATTTTATCAGTTGACAAATTTTTGATTCATCGTAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCGAAAAACTCACTGATAGAATAATAGTCGTATAATTGTCCATAATAGGAGCTCTCGGCTAGATCTACTTTTCCAAATTGGTCGTACGCCTCTGAAGGAATGATTTTTAGAAGAAACTATGGACTACAAGGTCTTACCGCGATCAATATTATGCCATAGAATCGTGATATGCTCATCTCTATCCCACCGTTCGTGTTCGTGATAGAAACCAACTGAATGCATCAGCTCGTGAATTGCAGTGTCATACTGGAATTAATAAGATCAATGCTCTAGAAATCGAGGAAAAAGAACCTGCAAACAACCATTGTCTAATGATAGTTCTTGTCGTCCACCAGCTCTTCCAACGTCCGAATAGCAACTGAAAAATGTTGAAAGTTTCCCCAAAAAGTGACTTCCGTAAACACTCAGTAGAAGACCACTTTATACTTGCACTTTGAGCTCAAGTATCTCCATTTCTATCAAAGAGATCAAAAATGAGTCAACTGATATGATATTTGTCATAATAGCACCAAAATTTTATCAGTTGACAAATTTTTGATTCATCGTATAGAAATTGGGATAAATGAACTTACAGTGCAATTATAACTTCTAAACTAACCCATCAATCTTTCCAATATACAAATAGTCATTATCTACAGCTGTTCGTGGAACAAATCTCACACAGGTCTTGTCGTGATATGCCTGTGAAAATGTAGAAACATTTTTAGTTTCAGTTATTCCAGGTTAAAGTTTGTCTCACCTGAAAACTTCTTGCCAAAACTGCTCTTTCTCTATCATTATACTGATTCGATATCACGTATGGAATCCTGCCGTTCGGCCATTTTCTTGTTCCAGTTATCACACCGTTCCTTCGCAAACTCTCACTGTTTTTTGAATCCTAAACTTATGATTTTTATTTCAAAATCCAAACTTCGAACATTCAACAAAATCGCATATTCACCCCAATCCTTTTTGACAAAAAAACGTCCGCCATTTTACCGGTTTTCCCGAGATTCATC</canonical>
            <polymorphic>GATCGAAAAACTCACTGATAGAATAATAGTCGTATAATTGTCCATAATAGGAGCTCTCGGCTAGATCTACTTTTCCAAATTGGTCGTACGCCTCTGAAGGAATGATTTTTAGAAGAAACTATGGACTACAAGGTCTTACCGCGATCAATATTATGCCATAGAATCGTGATATGCTCATCTCTATCCCACCGTTCGTGTTCGTGATAGAAACCAACTGAATGCATCAGCTCGTGAATTGCAGTGTCATACTGGAATTAATAAGATCAATGCTCTAGAAATCGAGGAAAAAGAACCTGCAAACAACCATTGTCTAATGATAGTTCTTGTCGTCCACCAGCTCTTCCAACGTCCGAATAGCAACTGAAAAATGTTGAAAGTTTCCCCAAAAAGTGACTTCCGTAAACACTCAGTAGAAGACCACTTTATACTTGCACTTTGAGCTCAAGTATCTCCATTTCTATCAAAGAGATCAAAAATGAGTCAACTGATATGATATTTGKCATAATAGCACCAAAATTTTATCAGTTGACAAATTTTTGATTCATCGTATAGAAATTGGGATAAATGAACTTACAGTGCAATTATAACTTCTAAACTAACCCATCAATCTTTCCAATATACAAATAGTCATTATCTACAGCTGTTCGTGGAACAAATCTCACACAGGTCTTGTCGTGATATGCCTGTGAAAATGTAGAAACATTTTTAGTTTCAGTTATTCCAGGTTAAAGTTTGTCTCACCTGAAAACTTCTTGCCAAAACTGCTCTTTCTCTATCATTATACTGATTCGATATCACGTATGGAATCCTGCCGTTCGGCCATTTTCTTGTTCCAGTTATCACACCGTTCCTTCGCAAACTCTCACTGTTTTTTGAATCCTAAACTTATGATTTTTATTTCAAAATCCAAACTTCGAACATTCAACAAAATCGCATATTCACCCCAATCCTTTTTGACAAAAAAACGTCCGCCATTTTACCGGTTTTCCCGAGATTCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAACTGAAAAATGTTGAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GATTGATGGGTTAGTTTAGAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GCAACTGAAAAATGTTGAAAGTTTCCCCAAAAAGTGACTTCCGTAAACACTCAGTAGAAGACCACTTTATACTTGCACTTTGAGCTCAAGTATCTCCATTTCTATCAAAGAGATCAAAAATGAGTCAACTGATATGATATTTGTCATAATAGCACCAAAATTTTATCAGTTGACAAATTTTTGATTCATCGTATAGAAATTGGGATAAATGAACTTACAGTGCAATTATAACTTCTAAACTAACCCATCAATC</canonical_amplicon>
		<polymorphic_amplicon>GCAACTGAAAAATGTTGAAAGTTTCCCCAAAAAGTGACTTCCGTAAACACTCAGTAGAAGACCACTTTATACTTGCACTTTGAGCTCAAGTATCTCCATTTCTATCAAAGAGATCAAAAATGAGTCAACTGATATGATATTTGKCATAATAGCACCAAAATTTTATCAGTTGACAAATTTTTGATTCATCGTATAGAAATTGGGATAAATGAACTTACAGTGCAATTATAACTTCTAAACTAACCCATCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30755</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>219346</contig_pos>
        <strand></strand>
        <context>tgkcataata[G/T]caccaamatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTATCAAAGAGATCAAAAATGAGTCAACTGATATGATATTTGTCATAATA</left_flank>
        <right_flank>CACCAAAATTTTATCAGTTGACAAATTTTTGATTCATCGTATAGAAATTG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTCACTGATAGAATAATAGTCGTATAATTGTCCATAATAGGAGCTCTCGGCTAGATCTACTTTTCCAAATTGGTCGTACGCCTCTGAAGGAATGATTTTTAGAAGAAACTATGGACTACAAGGTCTTACCGCGATCAATATTATGCCATAGAATCGTGATATGCTCATCTCTATCCCACCGTTCGTGTTCGTGATAGAAACCAACTGAATGCATCAGCTCGTGAATTGCAGTGTCATACTGGAATTAATAAGATCAATGCTCTAGAAATCGAGGAAAAAGAACCTGCAAACAACCATTGTCTAATGATAGTTCTTGTCGTCCACCAGCTCTTCCAACGTCCGAATAGCAACTGAAAAATGTTGAAAGTTTCCCCAAAAAGTGACTTCCGTAAACACTCAGTAGAAGACCACTTTATACTTGCACTTTGAGCTCAAGTATCTCCATTTCTATCAAAGAGATCAAAAATGAGTCAACTGATATGATATTTGTCATAATAGCACCAAAATTTTATCAGTTGACAAATTTTTGATTCATCGTATAGAAATTGGGATAAATGAACTTACAGTGCAATTATAACTTCTAAACTAACCCATCAATCTTTCCAATATACAAATAGTCATTATCTACAGCTGTTCGTGGAACAAATCTCACACAGGTCTTGTCGTGATATGCCTGTGAAAATGTAGAAACATTTTTAGTTTCAGTTATTCCAGGTTAAAGTTTGTCTCACCTGAAAACTTCTTGCCAAAACTGCTCTTTCTCTATCATTATACTGATTCGATATCACGTATGGAATCCTGCCGTTCGGCCATTTTCTTGTTCCAGTTATCACACCGTTCCTTCGCAAACTCTCACTGTTTTTTGAATCCTAAACTTATGATTTTTATTTCAAAATCCAAACTTCGAACATTCAACAAAATCGCATATTCACCCCAATCCTTTTTGACAAAAAAACGTCCGCCATTTTACCGGTTTTCCCGAGATTCATCGGTTTAAA</canonical>
            <polymorphic>AACTCACTGATAGAATAATAGTCGTATAATTGTCCATAATAGGAGCTCTCGGCTAGATCTACTTTTCCAAATTGGTCGTACGCCTCTGAAGGAATGATTTTTAGAAGAAACTATGGACTACAAGGTCTTACCGCGATCAATATTATGCCATAGAATCGTGATATGCTCATCTCTATCCCACCGTTCGTGTTCGTGATAGAAACCAACTGAATGCATCAGCTCGTGAATTGCAGTGTCATACTGGAATTAATAAGATCAATGCTCTAGAAATCGAGGAAAAAGAACCTGCAAACAACCATTGTCTAATGATAGTTCTTGTCGTCCACCAGCTCTTCCAACGTCCGAATAGCAACTGAAAAATGTTGAAAGTTTCCCCAAAAAGTGACTTCCGTAAACACTCAGTAGAAGACCACTTTATACTTGCACTTTGAGCTCAAGTATCTCCATTTCTATCAAAGAGATCAAAAATGAGTCAACTGATATGATATTTGTCATAATAKCACCAAAATTTTATCAGTTGACAAATTTTTGATTCATCGTATAGAAATTGGGATAAATGAACTTACAGTGCAATTATAACTTCTAAACTAACCCATCAATCTTTCCAATATACAAATAGTCATTATCTACAGCTGTTCGTGGAACAAATCTCACACAGGTCTTGTCGTGATATGCCTGTGAAAATGTAGAAACATTTTTAGTTTCAGTTATTCCAGGTTAAAGTTTGTCTCACCTGAAAACTTCTTGCCAAAACTGCTCTTTCTCTATCATTATACTGATTCGATATCACGTATGGAATCCTGCCGTTCGGCCATTTTCTTGTTCCAGTTATCACACCGTTCCTTCGCAAACTCTCACTGTTTTTTGAATCCTAAACTTATGATTTTTATTTCAAAATCCAAACTTCGAACATTCAACAAAATCGCATATTCACCCCAATCCTTTTTGACAAAAAAACGTCCGCCATTTTACCGGTTTTCCCGAGATTCATCGGTTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAACTGAAAAATGTTGAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GATTGATGGGTTAGTTTAGAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GCAACTGAAAAATGTTGAAAGTTTCCCCAAAAAGTGACTTCCGTAAACACTCAGTAGAAGACCACTTTATACTTGCACTTTGAGCTCAAGTATCTCCATTTCTATCAAAGAGATCAAAAATGAGTCAACTGATATGATATTTGTCATAATAGCACCAAAATTTTATCAGTTGACAAATTTTTGATTCATCGTATAGAAATTGGGATAAATGAACTTACAGTGCAATTATAACTTCTAAACTAACCCATCAATC</canonical_amplicon>
		<polymorphic_amplicon>GCAACTGAAAAATGTTGAAAGTTTCCCCAAAAAGTGACTTCCGTAAACACTCAGTAGAAGACCACTTTATACTTGCACTTTGAGCTCAAGTATCTCCATTTCTATCAAAGAGATCAAAAATGAGTCAACTGATATGATATTTGTCATAATAKCACCAAAATTTTATCAGTTGACAAATTTTTGATTCATCGTATAGAAATTGGGATAAATGAACTTACAGTGCAATTATAACTTCTAAACTAACCCATCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30756</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>219353</contig_pos>
        <strand></strand>
        <context>atakcaccaa[A/C]attttatcag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAGATCAAAAATGAGTCAACTGATATGATATTTGTCATAATAGCACCAA</left_flank>
        <right_flank>ATTTTATCAGTTGACAAATTTTTGATTCATCGTATAGAAATTGGGATAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATAGAATAATAGTCGTATAATTGTCCATAATAGGAGCTCTCGGCTAGATCTACTTTTCCAAATTGGTCGTACGCCTCTGAAGGAATGATTTTTAGAAGAAACTATGGACTACAAGGTCTTACCGCGATCAATATTATGCCATAGAATCGTGATATGCTCATCTCTATCCCACCGTTCGTGTTCGTGATAGAAACCAACTGAATGCATCAGCTCGTGAATTGCAGTGTCATACTGGAATTAATAAGATCAATGCTCTAGAAATCGAGGAAAAAGAACCTGCAAACAACCATTGTCTAATGATAGTTCTTGTCGTCCACCAGCTCTTCCAACGTCCGAATAGCAACTGAAAAATGTTGAAAGTTTCCCCAAAAAGTGACTTCCGTAAACACTCAGTAGAAGACCACTTTATACTTGCACTTTGAGCTCAAGTATCTCCATTTCTATCAAAGAGATCAAAAATGAGTCAACTGATATGATATTTGTCATAATAGCACCAAAATTTTATCAGTTGACAAATTTTTGATTCATCGTATAGAAATTGGGATAAATGAACTTACAGTGCAATTATAACTTCTAAACTAACCCATCAATCTTTCCAATATACAAATAGTCATTATCTACAGCTGTTCGTGGAACAAATCTCACACAGGTCTTGTCGTGATATGCCTGTGAAAATGTAGAAACATTTTTAGTTTCAGTTATTCCAGGTTAAAGTTTGTCTCACCTGAAAACTTCTTGCCAAAACTGCTCTTTCTCTATCATTATACTGATTCGATATCACGTATGGAATCCTGCCGTTCGGCCATTTTCTTGTTCCAGTTATCACACCGTTCCTTCGCAAACTCTCACTGTTTTTTGAATCCTAAACTTATGATTTTTATTTCAAAATCCAAACTTCGAACATTCAACAAAATCGCATATTCACCCCAATCCTTTTTGACAAAAAAACGTCCGCCATTTTACCGGTTTTCCCGAGATTCATCGGTTTAAACGGGGCA</canonical>
            <polymorphic>TGATAGAATAATAGTCGTATAATTGTCCATAATAGGAGCTCTCGGCTAGATCTACTTTTCCAAATTGGTCGTACGCCTCTGAAGGAATGATTTTTAGAAGAAACTATGGACTACAAGGTCTTACCGCGATCAATATTATGCCATAGAATCGTGATATGCTCATCTCTATCCCACCGTTCGTGTTCGTGATAGAAACCAACTGAATGCATCAGCTCGTGAATTGCAGTGTCATACTGGAATTAATAAGATCAATGCTCTAGAAATCGAGGAAAAAGAACCTGCAAACAACCATTGTCTAATGATAGTTCTTGTCGTCCACCAGCTCTTCCAACGTCCGAATAGCAACTGAAAAATGTTGAAAGTTTCCCCAAAAAGTGACTTCCGTAAACACTCAGTAGAAGACCACTTTATACTTGCACTTTGAGCTCAAGTATCTCCATTTCTATCAAAGAGATCAAAAATGAGTCAACTGATATGATATTTGTCATAATAGCACCAAMATTTTATCAGTTGACAAATTTTTGATTCATCGTATAGAAATTGGGATAAATGAACTTACAGTGCAATTATAACTTCTAAACTAACCCATCAATCTTTCCAATATACAAATAGTCATTATCTACAGCTGTTCGTGGAACAAATCTCACACAGGTCTTGTCGTGATATGCCTGTGAAAATGTAGAAACATTTTTAGTTTCAGTTATTCCAGGTTAAAGTTTGTCTCACCTGAAAACTTCTTGCCAAAACTGCTCTTTCTCTATCATTATACTGATTCGATATCACGTATGGAATCCTGCCGTTCGGCCATTTTCTTGTTCCAGTTATCACACCGTTCCTTCGCAAACTCTCACTGTTTTTTGAATCCTAAACTTATGATTTTTATTTCAAAATCCAAACTTCGAACATTCAACAAAATCGCATATTCACCCCAATCCTTTTTGACAAAAAAACGTCCGCCATTTTACCGGTTTTCCCGAGATTCATCGGTTTAAACGGGGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>499 484 17</canonical_bands>
                <polymorphic_bands>516 484</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>436 262 156 42 26 22 20 19 17</canonical_bands>
                <polymorphic_bands>436 279 156 42 26 22 20 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAACTGAAAAATGTTGAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GATTGATGGGTTAGTTTAGAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GCAACTGAAAAATGTTGAAAGTTTCCCCAAAAAGTGACTTCCGTAAACACTCAGTAGAAGACCACTTTATACTTGCACTTTGAGCTCAAGTATCTCCATTTCTATCAAAGAGATCAAAAATGAGTCAACTGATATGATATTTGTCATAATAGCACCAAAATTTTATCAGTTGACAAATTTTTGATTCATCGTATAGAAATTGGGATAAATGAACTTACAGTGCAATTATAACTTCTAAACTAACCCATCAATC</canonical_amplicon>
		<polymorphic_amplicon>GCAACTGAAAAATGTTGAAAGTTTCCCCAAAAAGTGACTTCCGTAAACACTCAGTAGAAGACCACTTTATACTTGCACTTTGAGCTCAAGTATCTCCATTTCTATCAAAGAGATCAAAAATGAGTCAACTGATATGATATTTGTCATAATAGCACCAAMATTTTATCAGTTGACAAATTTTTGATTCATCGTATAGAAATTGGGATAAATGAACTTACAGTGCAATTATAACTTCTAAACTAACCCATCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30757</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>219397</contig_pos>
        <strand></strand>
        <context>atagaaattg[G/A]gataaatgaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CACCAAAATTTTATCAGTTGACAAATTTTTGATTCATCGTATAGAAATTG</left_flank>
        <right_flank>GATAAATGAACTTACAGTGCAATTATAACTTCTAAACTAACCCATCAATC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTAGATCTACTTTTCCAAATTGGTCGTACGCCTCTGAAGGAATGATTTTTAGAAGAAACTATGGACTACAAGGTCTTACCGCGATCAATATTATGCCATAGAATCGTGATATGCTCATCTCTATCCCACCGTTCGTGTTCGTGATAGAAACCAACTGAATGCATCAGCTCGTGAATTGCAGTGTCATACTGGAATTAATAAGATCAATGCTCTAGAAATCGAGGAAAAAGAACCTGCAAACAACCATTGTCTAATGATAGTTCTTGTCGTCCACCAGCTCTTCCAACGTCCGAATAGCAACTGAAAAATGTTGAAAGTTTCCCCAAAAAGTGACTTCCGTAAACACTCAGTAGAAGACCACTTTATACTTGCACTTTGAGCTCAAGTATCTCCATTTCTATCAAAGAGATCAAAAATGAGTCAACTGATATGATATTTGTCATAATAGCACCAAAATTTTATCAGTTGACAAATTTTTGATTCATCGTATAGAAATTGGGATAAATGAACTTACAGTGCAATTATAACTTCTAAACTAACCCATCAATCTTTCCAATATACAAATAGTCATTATCTACAGCTGTTCGTGGAACAAATCTCACACAGGTCTTGTCGTGATATGCCTGTGAAAATGTAGAAACATTTTTAGTTTCAGTTATTCCAGGTTAAAGTTTGTCTCACCTGAAAACTTCTTGCCAAAACTGCTCTTTCTCTATCATTATACTGATTCGATATCACGTATGGAATCCTGCCGTTCGGCCATTTTCTTGTTCCAGTTATCACACCGTTCCTTCGCAAACTCTCACTGTTTTTTGAATCCTAAACTTATGATTTTTATTTCAAAATCCAAACTTCGAACATTCAACAAAATCGCATATTCACCCCAATCCTTTTTGACAAAAAAACGTCCGCCATTTTACCGGTTTTCCCGAGATTCATCGGTTTAAACGGGGCAGTTTCGTCTGGTTATTACAATGTCATCAACAATTTTTTCTCCCT</canonical>
            <polymorphic>GCTAGATCTACTTTTCCAAATTGGTCGTACGCCTCTGAAGGAATGATTTTTAGAAGAAACTATGGACTACAAGGTCTTACCGCGATCAATATTATGCCATAGAATCGTGATATGCTCATCTCTATCCCACCGTTCGTGTTCGTGATAGAAACCAACTGAATGCATCAGCTCGTGAATTGCAGTGTCATACTGGAATTAATAAGATCAATGCTCTAGAAATCGAGGAAAAAGAACCTGCAAACAACCATTGTCTAATGATAGTTCTTGTCGTCCACCAGCTCTTCCAACGTCCGAATAGCAACTGAAAAATGTTGAAAGTTTCCCCAAAAAGTGACTTCCGTAAACACTCAGTAGAAGACCACTTTATACTTGCACTTTGAGCTCAAGTATCTCCATTTCTATCAAAGAGATCAAAAATGAGTCAACTGATATGATATTTGTCATAATAGCACCAAAATTTTATCAGTTGACAAATTTTTGATTCATCGTATAGAAATTGRGATAAATGAACTTACAGTGCAATTATAACTTCTAAACTAACCCATCAATCTTTCCAATATACAAATAGTCATTATCTACAGCTGTTCGTGGAACAAATCTCACACAGGTCTTGTCGTGATATGCCTGTGAAAATGTAGAAACATTTTTAGTTTCAGTTATTCCAGGTTAAAGTTTGTCTCACCTGAAAACTTCTTGCCAAAACTGCTCTTTCTCTATCATTATACTGATTCGATATCACGTATGGAATCCTGCCGTTCGGCCATTTTCTTGTTCCAGTTATCACACCGTTCCTTCGCAAACTCTCACTGTTTTTTGAATCCTAAACTTATGATTTTTATTTCAAAATCCAAACTTCGAACATTCAACAAAATCGCATATTCACCCCAATCCTTTTTGACAAAAAAACGTCCGCCATTTTACCGGTTTTCCCGAGATTCATCGGTTTAAACGGGGCAGTTTCGTCTGGTTATTACAATGTCATCAACAATTTTTTCTCCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTTCCCCAAAAAGTGAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTGTATATTGGAAAGATTGATG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAGTTTCCCCAAAAAGTGACTTCCGTAAACACTCAGTAGAAGACCACTTTATACTTGCACTTTGAGCTCAAGTATCTCCATTTCTATCAAAGAGATCAAAAATGAGTCAACTGATATGATATTTGTCATAATAGCACCAAAATTTTATCAGTTGACAAATTTTTGATTCATCGTATAGAAATTGGGATAAATGAACTTACAGTGCAATTATAACTTCTAAACTAACCCATCAATCTTTCCAATATACAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAGTTTCCCCAAAAAGTGACTTCCGTAAACACTCAGTAGAAGACCACTTTATACTTGCACTTTGAGCTCAAGTATCTCCATTTCTATCAAAGAGATCAAAAATGAGTCAACTGATATGATATTTGTCATAATAGCACCAAAATTTTATCAGTTGACAAATTTTTGATTCATCGTATAGAAATTGRGATAAATGAACTTACAGTGCAATTATAACTTCTAAACTAACCCATCAATCTTTCCAATATACAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30758</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>221453</contig_pos>
        <strand>+</strand>
        <context>GAATGTGTTC[C/T]ATaccrtaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACGGCAAAAATTATCATAAACAAAAAGTACCTAAATTTGGAATGTGTTC</left_flank>
        <right_flank>ATACCGTAAAACCTGTAATATAAGGGTCTCCGCACTGTCAAGTTTAAGCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCACTGGAAGTGGATTGAGGCAAGAGATCTTCTGAAATTGTCAGACTGTAGATAAAAAGTTCAGGAAATGAAGTAATAGCCAAATTGGACCCGAAATCGAAGTCACAGGTAAAATGCGAACGGATCCGTTACGAACGCTCAGCGCTCGCGCGCGGTTGCAATAGGAACCGCATACGGACCGCACGCGACCCATTTTCAGAAAACCACAGCACATTATTCCGTATTCCTCCGTATTCTGTCCGTTCGCGAACTCCGTATCCGATCCGCTTGCGAATGATGGACAAACGGATCCGTTCGCGAATCAAACAACAGTTTAAGTTCGCGAACGGATCCGTTTGTTTATCATTCGCAATTGGATCGGATACGGAGTTCGCAAACTGATAGAATACGGAGAAGTACGAAATAATGTACTGTGGTTTTCTGAAAACGGGTCGCGTGCGGTTCGTATACGGCAAAAATTATCATAAACAAAAAGTACCTAAATTTGGAATGTGTTCTATACCGTAAAACCTGTAATATAAGGGTCTCCGCACTGTCAAGTTTAAGCACAATTATCTCAATTCTAATGTAAGATATCAAAAAGTGGTCAACTGGCAAAATGTTTCTGATATTATGATAAACAATTTACCAGTTGATAACTTGTTTCTATTTCTTACAGAAACCGAGAAAAATTGAAACTTAGAAGGTACTTCTATTACTGGTTTTATGATTTTCCAAATCTGAAAATTTTCAAGAATGCAAAACTAAAACCGAGCTGCATTTTTGTATTTTTATGTTGTTTGAAGAAGTTGGGTTTTGTTGAAAACATACTTTCGGCATGGATAGAAGCATATGATAGTGATAATATTAGAAAACTTGATAAGTAGTAGTTCAGCAGTTCATTTCTGCGCATCTCTCGTTTTCACTGGCGCTACTTTTTGCATTCCGATTGTTATGGTCTGAAAAATATGTAATATTTAGCTTTAAACTTGGTTTGTGGGTGAAATTTTCCACATTTG</canonical>
            <polymorphic>TTTCACTGGAAGTGGATTGAGGCAAGAGATCTTCTGAAATTGTCAGACTGTAGATAAAAAGTTCAGGAAATGAAGTAATAGCCAAATTGGACCCGAAATCGAAGTCACAGGTAAAATGCGAACGGATCCGTTACGAACGCTCAGCGCTCGCGCGCGGTTGCAATAGGAACCGCATACGGACCGCACGCGACCCATTTTCAGAAAACCACAGCACATTATTCCGTATTCCTCCGTATTCTGTCCGTTCGCGAACTCCGTATCCGATCCGCTTGCGAATGATGGACAAACGGATCCGTTCGCGAATCAAACAACAGTTTAAGTTCGCGAACGGATCCGTTTGTTTATCATTCGCAATTGGATCGGATACGGAGTTCGCAAACTGATAGAATACGGAGAAGTACGAAATAATGTACTGTGGTTTTCTGAAAACGGGTCGCGTGCGGTTCGTATACGGCAAAAATTATCATAAACAAAAAGTACCTAAATTTGGAATGTGTTCYATACCGTAAAACCTGTAATATAAGGGTCTCCGCACTGTCAAGTTTAAGCACAATTATCTCAATTCTAATGTAAGATATCAAAAAGTGGTCAACTGGCAAAATGTTTCTGATATTATGATAAACAATTTACCAGTTGATAACTTGTTTCTATTTCTTACAGAAACCGAGAAAAATTGAAACTTAGAAGGTACTTCTATTACTGGTTTTATGATTTTCCAAATCTGAAAATTTTCAAGAATGCAAAACTAAAACCGAGCTGCATTTTTGTATTTTTATGTTGTTTGAAGAAGTTGGGTTTTGTTGAAAACATACTTTCGGCATGGATAGAAGCATATGATAGTGATAATATTAGAAAACTTGATAAGTAGTAGTTCAGCAGTTCATTTCTGCGCATCTCTCGTTTTCACTGGCGCTACTTTTTGCATTCCGATTGTTATGGTCTGAAAAATATGTAATATTTAGCTTTAAACTTGGTTTGTGGGTGAAATTTTCCACATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTATACGGCAAAAATTATCA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTAGTTTTGCATTCTTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>CGTATACGGCAAAAATTATCATAAACAAAAAGTACCTAAATTTGGAATGTGTTCTATACCGTAAAACCTGTAATATAAGGGTCTCCGCACTGTCAAGTTTAAGCACAATTATCTCAATTCTAATGTAAGATATCAAAAAGTGGTCAACTGGCAAAATGTTTCTGATATTATGATAAACAATTTACCAGTTGATAACTTGTTTCTATTTCTTACAGAAACCGAGAAAAATTGAAACTTAGAAGGTACTTCTATTACTGGTTTTATGATTTTCCAAATCTGAAAATTTTCAAGAATGCAAAACTAAAAC</canonical_amplicon>
		<polymorphic_amplicon>CGTATACGGCAAAAATTATCATAAACAAAAAGTACCTAAATTTGGAATGTGTTCYATACCGTAAAACCTGTAATATAAGGGTCTCCGCACTGTCAAGTTTAAGCACAATTATCTCAATTCTAATGTAAGATATCAAAAAGTGGTCAACTGGCAAAATGTTTCTGATATTATGATAAACAATTTACCAGTTGATAACTTGTTTCTATTTCTTACAGAAACCGAGAAAAATTGAAACTTAGAAGGTACTTCTATTACTGGTTTTATGATTTTCCAAATCTGAAAATTTTCAAGAATGCAAAACTAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30759</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>221459</contig_pos>
        <strand></strand>
        <context>GTTCYATacc[G/A]taaaacctgt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAAATTATCATAAACAAAAAGTACCTAAATTTGGAATGTGTTCTATACC</left_flank>
        <right_flank>TAAAACCTGTAATATAAGGGTCTCCGCACTGTCAAGTTTAAGCACAATTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAAGTGGATTGAGGCAAGAGATCTTCTGAAATTGTCAGACTGTAGATAAAAAGTTCAGGAAATGAAGTAATAGCCAAATTGGACCCGAAATCGAAGTCACAGGTAAAATGCGAACGGATCCGTTACGAACGCTCAGCGCTCGCGCGCGGTTGCAATAGGAACCGCATACGGACCGCACGCGACCCATTTTCAGAAAACCACAGCACATTATTCCGTATTCCTCCGTATTCTGTCCGTTCGCGAACTCCGTATCCGATCCGCTTGCGAATGATGGACAAACGGATCCGTTCGCGAATCAAACAACAGTTTAAGTTCGCGAACGGATCCGTTTGTTTATCATTCGCAATTGGATCGGATACGGAGTTCGCAAACTGATAGAATACGGAGAAGTACGAAATAATGTACTGTGGTTTTCTGAAAACGGGTCGCGTGCGGTTCGTATACGGCAAAAATTATCATAAACAAAAAGTACCTAAATTTGGAATGTGTTCTATACCGTAAAACCTGTAATATAAGGGTCTCCGCACTGTCAAGTTTAAGCACAATTATCTCAATTCTAATGTAAGATATCAAAAAGTGGTCAACTGGCAAAATGTTTCTGATATTATGATAAACAATTTACCAGTTGATAACTTGTTTCTATTTCTTACAGAAACCGAGAAAAATTGAAACTTAGAAGGTACTTCTATTACTGGTTTTATGATTTTCCAAATCTGAAAATTTTCAAGAATGCAAAACTAAAACCGAGCTGCATTTTTGTATTTTTATGTTGTTTGAAGAAGTTGGGTTTTGTTGAAAACATACTTTCGGCATGGATAGAAGCATATGATAGTGATAATATTAGAAAACTTGATAAGTAGTAGTTCAGCAGTTCATTTCTGCGCATCTCTCGTTTTCACTGGCGCTACTTTTTGCATTCCGATTGTTATGGTCTGAAAAATATGTAATATTTAGCTTTAAACTTGGTTTGTGGGTGAAATTTTCCACATTTGTTGTTT</canonical>
            <polymorphic>TGGAAGTGGATTGAGGCAAGAGATCTTCTGAAATTGTCAGACTGTAGATAAAAAGTTCAGGAAATGAAGTAATAGCCAAATTGGACCCGAAATCGAAGTCACAGGTAAAATGCGAACGGATCCGTTACGAACGCTCAGCGCTCGCGCGCGGTTGCAATAGGAACCGCATACGGACCGCACGCGACCCATTTTCAGAAAACCACAGCACATTATTCCGTATTCCTCCGTATTCTGTCCGTTCGCGAACTCCGTATCCGATCCGCTTGCGAATGATGGACAAACGGATCCGTTCGCGAATCAAACAACAGTTTAAGTTCGCGAACGGATCCGTTTGTTTATCATTCGCAATTGGATCGGATACGGAGTTCGCAAACTGATAGAATACGGAGAAGTACGAAATAATGTACTGTGGTTTTCTGAAAACGGGTCGCGTGCGGTTCGTATACGGCAAAAATTATCATAAACAAAAAGTACCTAAATTTGGAATGTGTTCTATACCRTAAAACCTGTAATATAAGGGTCTCCGCACTGTCAAGTTTAAGCACAATTATCTCAATTCTAATGTAAGATATCAAAAAGTGGTCAACTGGCAAAATGTTTCTGATATTATGATAAACAATTTACCAGTTGATAACTTGTTTCTATTTCTTACAGAAACCGAGAAAAATTGAAACTTAGAAGGTACTTCTATTACTGGTTTTATGATTTTCCAAATCTGAAAATTTTCAAGAATGCAAAACTAAAACCGAGCTGCATTTTTGTATTTTTATGTTGTTTGAAGAAGTTGGGTTTTGTTGAAAACATACTTTCGGCATGGATAGAAGCATATGATAGTGATAATATTAGAAAACTTGATAAGTAGTAGTTCAGCAGTTCATTTCTGCGCATCTCTCGTTTTCACTGGCGCTACTTTTTGCATTCCGATTGTTATGGTCTGAAAAATATGTAATATTTAGCTTTAAACTTGGTTTGTGGGTGAAATTTTCCACATTTGTTGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>470 264 101 91 43 31</canonical_bands>
                <polymorphic_bands>470 264 122 101 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGCAAAAATTATCATAAACA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTAGTTTTGCATTCTTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>CGGCAAAAATTATCATAAACAAAAAGTACCTAAATTTGGAATGTGTTCTATACCGTAAAACCTGTAATATAAGGGTCTCCGCACTGTCAAGTTTAAGCACAATTATCTCAATTCTAATGTAAGATATCAAAAAGTGGTCAACTGGCAAAATGTTTCTGATATTATGATAAACAATTTACCAGTTGATAACTTGTTTCTATTTCTTACAGAAACCGAGAAAAATTGAAACTTAGAAGGTACTTCTATTACTGGTTTTATGATTTTCCAAATCTGAAAATTTTCAAGAATGCAAAACTAAAAC</canonical_amplicon>
		<polymorphic_amplicon>CGGCAAAAATTATCATAAACAAAAAGTACCTAAATTTGGAATGTGTTCTATACCRTAAAACCTGTAATATAAGGGTCTCCGCACTGTCAAGTTTAAGCACAATTATCTCAATTCTAATGTAAGATATCAAAAAGTGGTCAACTGGCAAAATGTTTCTGATATTATGATAAACAATTTACCAGTTGATAACTTGTTTCTATTTCTTACAGAAACCGAGAAAAATTGAAACTTAGAAGGTACTTCTATTACTGGTTTTATGATTTTCCAAATCTGAAAATTTTCAAGAATGCAAAACTAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30760</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>221474</contig_pos>
        <strand></strand>
        <context>acctgtaata[T/G]aagggtctcc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CAAAAAGTACCTAAATTTGGAATGTGTTCTATACCGTAAAACCTGTAATA</left_flank>
        <right_flank>AAGGGTCTCCGCACTGTCAAGTTTAAGCACAATTATCTCAATTCTAATGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAAGAGATCTTCTGAAATTGTCAGACTGTAGATAAAAAGTTCAGGAAATGAAGTAATAGCCAAATTGGACCCGAAATCGAAGTCACAGGTAAAATGCGAACGGATCCGTTACGAACGCTCAGCGCTCGCGCGCGGTTGCAATAGGAACCGCATACGGACCGCACGCGACCCATTTTCAGAAAACCACAGCACATTATTCCGTATTCCTCCGTATTCTGTCCGTTCGCGAACTCCGTATCCGATCCGCTTGCGAATGATGGACAAACGGATCCGTTCGCGAATCAAACAACAGTTTAAGTTCGCGAACGGATCCGTTTGTTTATCATTCGCAATTGGATCGGATACGGAGTTCGCAAACTGATAGAATACGGAGAAGTACGAAATAATGTACTGTGGTTTTCTGAAAACGGGTCGCGTGCGGTTCGTATACGGCAAAAATTATCATAAACAAAAAGTACCTAAATTTGGAATGTGTTCTATACCGTAAAACCTGTAATATAAGGGTCTCCGCACTGTCAAGTTTAAGCACAATTATCTCAATTCTAATGTAAGATATCAAAAAGTGGTCAACTGGCAAAATGTTTCTGATATTATGATAAACAATTTACCAGTTGATAACTTGTTTCTATTTCTTACAGAAACCGAGAAAAATTGAAACTTAGAAGGTACTTCTATTACTGGTTTTATGATTTTCCAAATCTGAAAATTTTCAAGAATGCAAAACTAAAACCGAGCTGCATTTTTGTATTTTTATGTTGTTTGAAGAAGTTGGGTTTTGTTGAAAACATACTTTCGGCATGGATAGAAGCATATGATAGTGATAATATTAGAAAACTTGATAAGTAGTAGTTCAGCAGTTCATTTCTGCGCATCTCTCGTTTTCACTGGCGCTACTTTTTGCATTCCGATTGTTATGGTCTGAAAAATATGTAATATTTAGCTTTAAACTTGGTTTGTGGGTGAAATTTTCCACATTTGTTGTTTTTCATCATAATCTCT</canonical>
            <polymorphic>GCAAGAGATCTTCTGAAATTGTCAGACTGTAGATAAAAAGTTCAGGAAATGAAGTAATAGCCAAATTGGACCCGAAATCGAAGTCACAGGTAAAATGCGAACGGATCCGTTACGAACGCTCAGCGCTCGCGCGCGGTTGCAATAGGAACCGCATACGGACCGCACGCGACCCATTTTCAGAAAACCACAGCACATTATTCCGTATTCCTCCGTATTCTGTCCGTTCGCGAACTCCGTATCCGATCCGCTTGCGAATGATGGACAAACGGATCCGTTCGCGAATCAAACAACAGTTTAAGTTCGCGAACGGATCCGTTTGTTTATCATTCGCAATTGGATCGGATACGGAGTTCGCAAACTGATAGAATACGGAGAAGTACGAAATAATGTACTGTGGTTTTCTGAAAACGGGTCGCGTGCGGTTCGTATACGGCAAAAATTATCATAAACAAAAAGTACCTAAATTTGGAATGTGTTCTATACCGTAAAACCTGTAATAKAAGGGTCTCCGCACTGTCAAGTTTAAGCACAATTATCTCAATTCTAATGTAAGATATCAAAAAGTGGTCAACTGGCAAAATGTTTCTGATATTATGATAAACAATTTACCAGTTGATAACTTGTTTCTATTTCTTACAGAAACCGAGAAAAATTGAAACTTAGAAGGTACTTCTATTACTGGTTTTATGATTTTCCAAATCTGAAAATTTTCAAGAATGCAAAACTAAAACCGAGCTGCATTTTTGTATTTTTATGTTGTTTGAAGAAGTTGGGTTTTGTTGAAAACATACTTTCGGCATGGATAGAAGCATATGATAGTGATAATATTAGAAAACTTGATAAGTAGTAGTTCAGCAGTTCATTTCTGCGCATCTCTCGTTTTCACTGGCGCTACTTTTTGCATTCCGATTGTTATGGTCTGAAAAATATGTAATATTTAGCTTTAAACTTGGTTTGTGGGTGAAATTTTCCACATTTGTTGTTTTTCATCATAATCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAAAAATTATCATAAACAAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GTTTTAGTTTTGCATTCTTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>299</pcr_amplicon_size>
		<canonical_amplicon>GCAAAAATTATCATAAACAAAAAGTACCTAAATTTGGAATGTGTTCTATACCGTAAAACCTGTAATATAAGGGTCTCCGCACTGTCAAGTTTAAGCACAATTATCTCAATTCTAATGTAAGATATCAAAAAGTGGTCAACTGGCAAAATGTTTCTGATATTATGATAAACAATTTACCAGTTGATAACTTGTTTCTATTTCTTACAGAAACCGAGAAAAATTGAAACTTAGAAGGTACTTCTATTACTGGTTTTATGATTTTCCAAATCTGAAAATTTTCAAGAATGCAAAACTAAAAC</canonical_amplicon>
		<polymorphic_amplicon>GCAAAAATTATCATAAACAAAAAGTACCTAAATTTGGAATGTGTTCTATACCGTAAAACCTGTAATAKAAGGGTCTCCGCACTGTCAAGTTTAAGCACAATTATCTCAATTCTAATGTAAGATATCAAAAAGTGGTCAACTGGCAAAATGTTTCTGATATTATGATAAACAATTTACCAGTTGATAACTTGTTTCTATTTCTTACAGAAACCGAGAAAAATTGAAACTTAGAAGGTACTTCTATTACTGGTTTTATGATTTTCCAAATCTGAAAATTTTCAAGAATGCAAAACTAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30761</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>221520</contig_pos>
        <strand></strand>
        <context>tctcaattct[A/T]atgtaagata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATATAAGGGTCTCCGCACTGTCAAGTTTAAGCACAATTATCTCAATTCT</left_flank>
        <right_flank>ATGTAAGATATCAAAAAGTGGTCAACTGGCAAAATGTTTCTGATATTATG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGAAGTAATAGCCAAATTGGACCCGAAATCGAAGTCACAGGTAAAATGCGAACGGATCCGTTACGAACGCTCAGCGCTCGCGCGCGGTTGCAATAGGAACCGCATACGGACCGCACGCGACCCATTTTCAGAAAACCACAGCACATTATTCCGTATTCCTCCGTATTCTGTCCGTTCGCGAACTCCGTATCCGATCCGCTTGCGAATGATGGACAAACGGATCCGTTCGCGAATCAAACAACAGTTTAAGTTCGCGAACGGATCCGTTTGTTTATCATTCGCAATTGGATCGGATACGGAGTTCGCAAACTGATAGAATACGGAGAAGTACGAAATAATGTACTGTGGTTTTCTGAAAACGGGTCGCGTGCGGTTCGTATACGGCAAAAATTATCATAAACAAAAAGTACCTAAATTTGGAATGTGTTCTATACCGTAAAACCTGTAATATAAGGGTCTCCGCACTGTCAAGTTTAAGCACAATTATCTCAATTCTAATGTAAGATATCAAAAAGTGGTCAACTGGCAAAATGTTTCTGATATTATGATAAACAATTTACCAGTTGATAACTTGTTTCTATTTCTTACAGAAACCGAGAAAAATTGAAACTTAGAAGGTACTTCTATTACTGGTTTTATGATTTTCCAAATCTGAAAATTTTCAAGAATGCAAAACTAAAACCGAGCTGCATTTTTGTATTTTTATGTTGTTTGAAGAAGTTGGGTTTTGTTGAAAACATACTTTCGGCATGGATAGAAGCATATGATAGTGATAATATTAGAAAACTTGATAAGTAGTAGTTCAGCAGTTCATTTCTGCGCATCTCTCGTTTTCACTGGCGCTACTTTTTGCATTCCGATTGTTATGGTCTGAAAAATATGTAATATTTAGCTTTAAACTTGGTTTGTGGGTGAAATTTTCCACATTTGTTGTTTTTCATCATAATCTCTCATAGTGAGAAAAAGTTACCGTAAACACTTTAATAGAGGGTCCATC</canonical>
            <polymorphic>AAATGAAGTAATAGCCAAATTGGACCCGAAATCGAAGTCACAGGTAAAATGCGAACGGATCCGTTACGAACGCTCAGCGCTCGCGCGCGGTTGCAATAGGAACCGCATACGGACCGCACGCGACCCATTTTCAGAAAACCACAGCACATTATTCCGTATTCCTCCGTATTCTGTCCGTTCGCGAACTCCGTATCCGATCCGCTTGCGAATGATGGACAAACGGATCCGTTCGCGAATCAAACAACAGTTTAAGTTCGCGAACGGATCCGTTTGTTTATCATTCGCAATTGGATCGGATACGGAGTTCGCAAACTGATAGAATACGGAGAAGTACGAAATAATGTACTGTGGTTTTCTGAAAACGGGTCGCGTGCGGTTCGTATACGGCAAAAATTATCATAAACAAAAAGTACCTAAATTTGGAATGTGTTCTATACCGTAAAACCTGTAATATAAGGGTCTCCGCACTGTCAAGTTTAAGCACAATTATCTCAATTCTWATGTAAGATATCAAAAAGTGGTCAACTGGCAAAATGTTTCTGATATTATGATAAACAATTTACCAGTTGATAACTTGTTTCTATTTCTTACAGAAACCGAGAAAAATTGAAACTTAGAAGGTACTTCTATTACTGGTTTTATGATTTTCCAAATCTGAAAATTTTCAAGAATGCAAAACTAAAACCGAGCTGCATTTTTGTATTTTTATGTTGTTTGAAGAAGTTGGGTTTTGTTGAAAACATACTTTCGGCATGGATAGAAGCATATGATAGTGATAATATTAGAAAACTTGATAAGTAGTAGTTCAGCAGTTCATTTCTGCGCATCTCTCGTTTTCACTGGCGCTACTTTTTGCATTCCGATTGTTATGGTCTGAAAAATATGTAATATTTAGCTTTAAACTTGGTTTGTGGGTGAAATTTTCCACATTTGTTGTTTTTCATCATAATCTCTCATAGTGAGAAAAAGTTACCGTAAACACTTTAATAGAGGGTCCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAAAAATTATCATAAACAAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GTTTTAGTTTTGCATTCTTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>299</pcr_amplicon_size>
		<canonical_amplicon>GCAAAAATTATCATAAACAAAAAGTACCTAAATTTGGAATGTGTTCTATACCGTAAAACCTGTAATATAAGGGTCTCCGCACTGTCAAGTTTAAGCACAATTATCTCAATTCTAATGTAAGATATCAAAAAGTGGTCAACTGGCAAAATGTTTCTGATATTATGATAAACAATTTACCAGTTGATAACTTGTTTCTATTTCTTACAGAAACCGAGAAAAATTGAAACTTAGAAGGTACTTCTATTACTGGTTTTATGATTTTCCAAATCTGAAAATTTTCAAGAATGCAAAACTAAAAC</canonical_amplicon>
		<polymorphic_amplicon>GCAAAAATTATCATAAACAAAAAGTACCTAAATTTGGAATGTGTTCTATACCGTAAAACCTGTAATATAAGGGTCTCCGCACTGTCAAGTTTAAGCACAATTATCTCAATTCTWATGTAAGATATCAAAAAGTGGTCAACTGGCAAAATGTTTCTGATATTATGATAAACAATTTACCAGTTGATAACTTGTTTCTATTTCTTACAGAAACCGAGAAAAATTGAAACTTAGAAGGTACTTCTATTACTGGTTTTATGATTTTCCAAATCTGAAAATTTTCAAGAATGCAAAACTAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30762</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>247456</contig_pos>
        <strand>+</strand>
        <context>ATCCAGTGAG[A/G]TTTTTTTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCAGCTACCAAGAGAGCATTTCCAGAGCATCTCCATACAATCCAGTGAG</left_flank>
        <right_flank>TTTTTTTTGAACTCGAGATGCTCAAAGATCAGATCTTTGACCTCATAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTTTGATCTGGAACCGTAATTTTCTTTTCAATCGTTCTCTCTTCCTAAAAAATCTCAACTTCTAATATATCTCATAGGTGGATATGATGCCGATCAACCGGTATTCATCATCAGTTTCTGATCACTACGACTCATCAGACGAGTATGACAATTATAGTGAACAGAACTATGAATATGTCTACAAAACTCGTCTGGTGCCCTTCAATCCGCAGGTTCTTATTAGTAAGTGTCACAGCGACAGAACACGGTAGAATTCCAAACTGCAAACCCGTAACTCGGAAATTTCAGCCATCCCACCAATGGTGAACAACGCCAAGCAGATCGCCCAAAATCCACATGACCAATACGCTGCACAGAACTGGCGTGGAACCAACGATCATTTGTTGAACAGTGTCAGAGCAGTCGGAGATGCTATTACCGGTTTACCAATAAACAACGGAAGACATTCCAGCTACCAAGAGAGCATTTCCAGAGCATCTCCATACAATCCAGTGAGTTTTTTTTTGAACTCGAGATGCTCAAAGATCAGATCTTTGACCTCATAATTTAGGCCTAGTAAATAGAAACTTTTCTTCTTCCTCGTTTTGTTTGCTCGCTTCCAAGTCGGCACAAGAATGTTCGCATCTTGAAACTATGAGGATCTGATTTCAAGGGGAAAAGTTCCGATGTTTTGATATGCAAATGAAATGAAATCACGATTAATAAATCATTGAGATCTCGATTGCATTAACTTCATTAGGGGATACCGTAAGCACTCCAGTAGAGTGCCACCAACCCGTCAACTTTGAGACAATTTATCTCATTTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACGAAACGTTTTTGATATTACGATAAACATTTTGATAGTTGACTACTTTTTGATATCTTTTACAGGAACCGAAATAAATTGGCTCAAAGTTCAAAGTTAGTGGTGTCGTTCTATTAGTGTTGACGGTAATCTTAAAAGCAGCAAACTAAATTGAAAATAGA</canonical>
            <polymorphic>ACTTTTTGATCTGGAACCGTAATTTTCTTTTCAATCGTTCTCTCTTCCTAAAAAATCTCAACTTCTAATATATCTCATAGGTGGATATGATGCCGATCAACCGGTATTCATCATCAGTTTCTGATCACTACGACTCATCAGACGAGTATGACAATTATAGTGAACAGAACTATGAATATGTCTACAAAACTCGTCTGGTGCCCTTCAATCCGCAGGTTCTTATTAGTAAGTGTCACAGCGACAGAACACGGTAGAATTCCAAACTGCAAACCCGTAACTCGGAAATTTCAGCCATCCCACCAATGGTGAACAACGCCAAGCAGATCGCCCAAAATCCACATGACCAATACGCTGCACAGAACTGGCGTGGAACCAACGATCATTTGTTGAACAGTGTCAGAGCAGTCGGAGATGCTATTACCGGTTTACCAATAAACAACGGAAGACATTCCAGCTACCAAGAGAGCATTTCCAGAGCATCTCCATACAATCCAGTGAGRTTTTTTTTGAACTCGAGATGCTCAAAGATCAGATCTTTGACCTCATAATTTAGGCCTAGTAAATAGAAACTTTTCTTCTTCCTCGTTTTGTTTGCTCGCTTCCAAGTCGGCACAAGAATGTTCGCATCTTGAAACTATGAGGATCTGATTTCAAGGGGAAAAGTTCCGATGTTTTGATATGCAAATGAAATGAAATCACGATTAATAAATCATTGAGATCTCGATTGCATTAACTTCATTAGGGGATACCGTAAGCACTCCAGTAGAGTGCCACCAACCCGTCAACTTTGAGACAATTTATCTCATTTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACGAAACGTTTTTGATATTACGATAAACATTTTGATAGTTGACTACTTTTTGATATCTTTTACAGGAACCGAAATAAATTGGCTCAAAGTTCAAAGTTAGTGGTGTCGTTCTATTAGTGTTGACGGTAATCTTAAAAGCAGCAAACTAAATTGAAAATAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTCGGAGATGCTATTACC</pcr_primer_p1>
		<pcr_primer_p2>GAAATCAGATCCTCATAGTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGTCGGAGATGCTATTACCGGTTTACCAATAAACAACGGAAGACATTCCAGCTACCAAGAGAGCATTTCCAGAGCATCTCCATACAATCCAGTGAGTTTTTTTTTGAACTCGAGATGCTCAAAGATCAGATCTTTGACCTCATAATTTAGGCCTAGTAAATAGAAACTTTTCTTCTTCCTCGTTTTGTTTGCTCGCTTCCAAGTCGGCACAAGAATGTTCGCATCTTGAAACTATGAGGATCTGATTTC</canonical_amplicon>
		<polymorphic_amplicon>CAGTCGGAGATGCTATTACCGGTTTACCAATAAACAACGGAAGACATTCCAGCTACCAAGAGAGCATTTCCAGAGCATCTCCATACAATCCAGTGAGRTTTTTTTTGAACTCGAGATGCTCAAAGATCAGATCTTTGACCTCATAATTTAGGCCTAGTAAATAGAAACTTTTCTTCTTCCTCGTTTTGTTTGCTCGCTTCCAAGTCGGCACAAGAATGTTCGCATCTTGAAACTATGAGGATCTGATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30763</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>265065</contig_pos>
        <strand>+</strand>
        <context>GTTAAACAGA[G/T]TTGAACGTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAATGATTATATCGGTTATGGTTGGGGCGAAGTTTCAATAGTTAAACAGA</left_flank>
        <right_flank>TTGAACGTTTCAGGTAACATTCTCAATGTCGTACATGCTTTTGGTATTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCTTAGTTGTTTCATTGGTCAGAACCCCTCTTTCTTTGGGGCTGACAACCATTCTCGGTCTGTCCTAGTCTCTCCCGGCCTTCTCTACTTTTCCCCCTCTATTCTCGTACATCTTTAGTACCTGAATAAATCTGTATTCTATTACTATTCGTATTCCTTGAGCCGGCCAGAATGCCGGATCCTAAGGACGTAACACAGGGAGACACCTACATTGGTCAAATCTATTTGTTAGTATTCACAATTGTATACTTCGTAATTATTCTGGTTTTGGGGGTCTTCACATTCATCCACGTGAAAAAAAGTTGATAATTCAACTCTCGACTCAACACAAACAACTTCTCAAGATCCGATCAAAAATTGCAATTACCCATACATTCGTTTATGCCCTTTTCCTACTGTGGAATCTTTCAGCAAACCATTTCTCATCTGCTGCACATTTGAATTTACTAATGATTATATCGGTTATGGTTGGGGCGAAGTTTCAATAGTTAAACAGAGTTGAACGTTTCAGGTAACATTCTCAATGTCGTACATGCTTTTGGTATTTGACAAAAATGTTTGAATTGTAATCATGGAGAGATTTTTTCAATGTGGTTTATACTGCTGAATATGGTTTTAGCCTTAATTATGTTATTTTTAGTGTTATTTTATTTTTTGGAATAAACACCAGACACCAATTTATCATTTATGTATATAAAGTGTTTTATTTTGAAATTCGGAGAGTTATTAATTGAGCATGTGAATTTTAAAAAATCAAATGATAAACTTGAATAATTACTTCATTTATTACTATCGATTTAGTTTACTTAAGAGTGCTCCAACAGGATTTTGCTTCGTTGATTGTCTCATTGTCATCTGCGTCTCTTGGGATCATTGATTTATCTTTCTCTGGAAGTGTTTCGACGTTTTAGAAAAAATATATTTCAAATCTGTCTGTGATGTCCTATTACTCATATTGCTATTTCCTAACTAATAATCATGACTTCTCACCTGGATCC</canonical>
            <polymorphic>CTTCTTAGTTGTTTCATTGGTCAGAACCCCTCTTTCTTTGGGGCTGACAACCATTCTCGGTCTGTCCTAGTCTCTCCCGGCCTTCTCTACTTTTCCCCCTCTATTCTCGTACATCTTTAGTACCTGAATAAATCTGTATTCTATTACTATTCGTATTCCTTGAGCCGGCCAGAATGCCGGATCCTAAGGACGTAACACAGGGAGACACCTACATTGGTCAAATCTATTTGTTAGTATTCACAATTGTATACTTCGTAATTATTCTGGTTTTGGGGGTCTTCACATTCATCCACGTGAAAAAAAGTTGATAATTCAACTCTCGACTCAACACAAACAACTTCTCAAGATCCGATCAAAAATTGCAATTACCCATACATTCGTTTATGCCCTTTTCCTACTGTGGAATCTTTCAGCAAACCATTTCTCATCTGCTGCACATTTGAATTTACTAATGATTATATCGGTTATGGTTGGGGCGAAGTTTCAATAGTTAAACAGAKTTGAACGTTTCAGGTAACATTCTCAATGTCGTACATGCTTTTGGTATTTGACAAAAATGTTTGAATTGTAATCATGGAGAGATTTTTTCAATGTGGTTTATACTGCTGAATATGGTTTTAGCCTTAATTATGTTATTTTTAGTGTTATTTTATTTTTTGGAATAAACACCAGACACCAATTTATCATTTATGTATATAAAGTGTTTTATTTTGAAATTCGGAGAGTTATTAATTGAGCATGTGAATTTTAAAAAATCAAATGATAAACTTGAATAATTACTTCATTTATTACTATCGATTTAGTTTACTTAAGAGTGCTCCAACAGGATTTTGCTTCGTTGATTGTCTCATTGTCATCTGCGTCTCTTGGGATCATTGATTTATCTTTCTCTGGAAGTGTTTCGACGTTTTAGAAAAAATATATTTCAAATCTGTCTGTGATGTCCTATTACTCATATTGCTATTTCCTAACTAATAATCATGACTTCTCACCTGGATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTACCCATACATTCGTTTAT</pcr_primer_p1>
		<pcr_primer_p2>AGCAGTATAAACCACATTGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CAATTACCCATACATTCGTTTATGCCCTTTTCCTACTGTGGAATCTTTCAGCAAACCATTTCTCATCTGCTGCACATTTGAATTTACTAATGATTATATCGGTTATGGTTGGGGCGAAGTTTCAATAGTTAAACAGAGTTGAACGTTTCAGGTAACATTCTCAATGTCGTACATGCTTTTGGTATTTGACAAAAATGTTTGAATTGTAATCATGGAGAGATTTTTTCAATGTGGTTTATACTGCT</canonical_amplicon>
		<polymorphic_amplicon>CAATTACCCATACATTCGTTTATGCCCTTTTCCTACTGTGGAATCTTTCAGCAAACCATTTCTCATCTGCTGCACATTTGAATTTACTAATGATTATATCGGTTATGGTTGGGGCGAAGTTTCAATAGTTAAACAGAKTTGAACGTTTCAGGTAACATTCTCAATGTCGTACATGCTTTTGGTATTTGACAAAAATGTTTGAATTGTAATCATGGAGAGATTTTTTCAATGTGGTTTATACTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30764</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>315854</contig_pos>
        <strand></strand>
        <context>GAATATATAG[A/T]TCAAGGGTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAGTTGCCAAGAGGGTGCATTGGTGGAGAGAGGAGTAGGAATATATAG</left_flank>
        <right_flank>TCAAGGGTACAAAGTCCATTTCATCCTCTTTAGTAATTACGTAATTTGGA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAGAAAACTCGATGTCATAAATCGGATAGTTGGTGTGTTGGACCAACTCCAGGAACTTTTGCCTCAATTGCTCATAAACACGACAGTGGCAGAGAAGATCCATGACCACTTTTGTGGTTTTCGTTTCGTTGAACATTTTCCAGCAAAAGTCCACTTTGACACGACATGTTTGATTATGATTTTGACACTGTGGTCTCATCATGATGGGGTTTGTTTCCAAGTTTCTGAAAGAATGTATTTCAGTGTGAACAAGAAGAGGAAGTGAAAAGAGAGAAACTGGAATAATAATCAAAGCAATTTAATAGATAACGAAGCGGATAGAAAACATGCATATTATGCCGAAAAGAAACTTTATTGATCAGGAGTGCTTTCCGCGCGGAAGAGATCGATAGGATGAAGGCGACGGAGGGAGAAGAGACATGCTGTCTCGTGGTGTGTCTCGAAGAGTGAAAGTTGCCAAGAGGGTGCATTGGTGGAGAGAGGAGTAGGAATATATAGATCAAGGGTACAAAGTCCATTTCATCCTCTTTAGTAATTACGTAATTTGGAGAAAAATAAGGTTTCTAATAGATGCTTCTTGAAATCTAGCTGAAACGTAGTTGAACAAGAGTTATGTATTATTCTGATACAAAACTCAAACCTTTGGGAGAGAAGAAGACGGTGACCGTGGCCGAAGGTCTCAAAACGACTACTACAGTAACCTACATCTTTTTTTCAGGATTTATTTCCTCGTCTTTCACTGCTTTTCGTCGTTTTTTTTTCTTATTTTCACCCAGAAAAGTATTACCATAGTCTGAAAAAAGGTCGAGAGCAAATATCTTGTTGAATTTTTTTGAAGGCGCAAGAGCGAACTACCGTATCTTTTTAGCTTATTTTGAATATTATTTTCGTATTTTCTAAATTTCTGGATGATTCTCATTGTTTTTTCAATTATTTTTATTATTCGGATTCCTTTTTCGCAATTACATCGTAAAAACGGCAAAAAGCGTCGAAAATAAG</canonical>
            <polymorphic>CAAGAAAACTCGATGTCATAAATCGGATAGTTGGTGTGTTGGACCAACTCCAGGAACTTTTGCCTCAATTGCTCATAAACACGACAGTGGCAGAGAAGATCCATGACCACTTTTGTGGTTTTCGTTTCGTTGAACATTTTCCAGCAAAAGTCCACTTTGACACGACATGTTTGATTATGATTTTGACACTGTGGTCTCATCATGATGGGGTTTGTTTCCAAGTTTCTGAAAGAATGTATTTCAGTGTGAACAAGAAGAGGAAGTGAAAAGAGAGAAACTGGAATAATAATCAAAGCAATTTAATAGATAACGAAGCGGATAGAAAACATGCATATTATGCCGAAAAGAAACTTTATTGATCAGGAGTGCTTTCCGCGCGGAAGAGATCGATAGGATGAAGGCGACGGAGGGAGAAGAGACATGCTGTCTCGTGGTGTGTCTCGAAGAGTGAAAGTTGCCAAGAGGGTGCATTGGTGGAGAGAGGAGTAGGAATATATAGWTCAAGGGTACAAAGTCCATTTCATCCTCTTTAGTAATTACGTAATTTGGAGAAAAATAAGGTTTCTAATAGATGCTTCTTGAAATCTAGCTGAAACGTAGTTGAACAAGAGTTATGTATTATTCTGATACAAAACTCAAACCTTTGGGAGAGAAGAAGACGGTGACCGTGGCCGAAGGTCTCAAAACGACTACTACAGTAACCTACATCTTTTTTTCAGGATTTATTTCCTCGTCTTTCACTGCTTTTCGTCGTTTTTTTTTCTTATTTTCACCCAGAAAAGTATTACCATAGTCTGAAAAAAGGTCGAGAGCAAATATCTTGTTGAATTTTTTTGAAGGCGCAAGAGCGAACTACCGTATCTTTTTAGCTTATTTTGAATATTATTTTCGTATTTTCTAAATTTCTGGATGATTCTCATTGTTTTTTCAATTATTTTTATTATTCGGATTCCTTTTTCGCAATTACATCGTAAAAACGGCAAAAAGCGTCGAAAATAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>502 260 114 97 27</canonical_bands>
                <polymorphic_bands>616 260 97 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTATTGATCAGGAGTGCTTTC</pcr_primer_p1>
		<pcr_primer_p2>ACTACGTTTCAGCTAGATTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTATTGATCAGGAGTGCTTTCCGCGCGGAAGAGATCGATAGGATGAAGGCGACGGAGGGAGAAGAGACATGCTGTCTCGTGGTGTGTCTCGAAGAGTGAAAGTTGCCAAGAGGGTGCATTGGTGGAGAGAGGAGTAGGAATATATAGATCAAGGGTACAAAGTCCATTTCATCCTCTTTAGTAATTACGTAATTTGGAGAAAAATAAGGTTTCTAATAGATGCTTCTTGAAATCTAGCTGAAACGTAGT</canonical_amplicon>
		<polymorphic_amplicon>TTTATTGATCAGGAGTGCTTTCCGCGCGGAAGAGATCGATAGGATGAAGGCGACGGAGGGAGAAGAGACATGCTGTCTCGTGGTGTGTCTCGAAGAGTGAAAGTTGCCAAGAGGGTGCATTGGTGGAGAGAGGAGTAGGAATATATAGWTCAAGGGTACAAAGTCCATTTCATCCTCTTTAGTAATTACGTAATTTGGAGAAAAATAAGGTTTCTAATAGATGCTTCTTGAAATCTAGCTGAAACGTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30765</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>330828</contig_pos>
        <strand></strand>
        <context>ATTCATTTAG[C/T]TTTGTGAGTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGAACGCTTTAGAATTGAGAGAGTGACGATGAATTTTAGATTCATTTAG</left_flank>
        <right_flank>TTTGTGAGTGGGTAACATTGGATCATTCTTCTGGAAACCCATTAGAAGTT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAAAATGACCTTCTCAAGAGTCAAAACTGTGTCGGTCACTTCAAAAGAGCTCCCCTTGATCTTCCTTGCGGTAAATCCGCGCGGAAGAGAAAAAGAAGAAGAAGAAGGAGAAGGGCATGGCATATCCATATTCATTATAAAATGTTGACGTATCAGATGGATTTATTAGTAAGTTATACTCCCCATATTGATGATTAGAATCTGAACACTTTCTCTTGGCGAAACAATAAGTTTGAGAGTAATTTGACAACTTTGGAGGAGAAAAGTTAATTAAGAAACCTTGAAACAGGATTAGATCTCTTTCTGCGATTTAGGCCATTGTCTCTTTCTACTCATAAGTTATGATGTATGTGGGGACGCTTGGATTGCTAATTAGTGTTTACAATGTGGTCCAAAGTGTCCATGATCGGTTATGTATGGGCACAACAACAGGTGCCTCCAAAGCTTCCGAACGCTTTAGAATTGAGAGAGTGACGATGAATTTTAGATTCATTTAGCTTTGTGAGTGGGTAACATTGGATCATTCTTCTGGAAACCCATTAGAAGTTCCAATATTCTTTTCACTTTTTCGTTGTTTTTTCTTTCTTTCCAACTATTAATTTCGGAATGATGCAGCCTGAAGGAACCATAACTGCCAGATGTGTGTCTGAGGTTTTGCTCCCGAGGAGCAAGCATGAGAGCAACAAGCAACAGATGCTCTAAAAGAGCGGACCATTTGTTTTGTGAGTGTATAAACGTCTCAGTCTCTAACTTCAGAATATATGAACAATCATCATTCGAACCGTAGGAGGGAGTGAGGGTGTGATGATTTTTAAACACTCATTCCTTTCAACAAGAAGAGAGAATGAATATAGTGGAAATGTGTGTGTTCGGAAATCATTCCAATTTCCGGTCAAGTTCCTGCTTTGTTGCTCTAGAGAAAGAGTTATGAGTTATGATAGGAAATGAATCATTCTGCGTATCCGCATAGATAACAAAAATATACATCAGGAACGCTT</canonical>
            <polymorphic>ATGAAAATGACCTTCTCAAGAGTCAAAACTGTGTCGGTCACTTCAAAAGAGCTCCCCTTGATCTTCCTTGCGGTAAATCCGCGCGGAAGAGAAAAAGAAGAAGAAGAAGGAGAAGGGCATGGCATATCCATATTCATTATAAAATGTTGACGTATCAGATGGATTTATTAGTAAGTTATACTCCCCATATTGATGATTAGAATCTGAACACTTTCTCTTGGCGAAACAATAAGTTTGAGAGTAATTTGACAACTTTGGAGGAGAAAAGTTAATTAAGAAACCTTGAAACAGGATTAGATCTCTTTCTGCGATTTAGGCCATTGTCTCTTTCTACTCATAAGTTATGATGTATGTGGGGACGCTTGGATTGCTAATTAGTGTTTACAATGTGGTCCAAAGTGTCCATGATCGGTTATGTATGGGCACAACAACAGGTGCCTCCAAAGCTTCCGAACGCTTTAGAATTGAGAGAGTGACGATGAATTTTAGATTCATTTAGYTTTGTGAGTGGGTAACATTGGATCATTCTTCTGGAAACCCATTAGAAGTTCCAATATTCTTTTCACTTTTTCGTTGTTTTTTCTTTCTTTCCAACTATTAATTTCGGAATGATGCAGCCTGAAGGAACCATAACTGCCAGATGTGTGTCTGAGGTTTTGCTCCCGAGGAGCAAGCATGAGAGCAACAAGCAACAGATGCTCTAAAAGAGCGGACCATTTGTTTTGTGAGTGTATAAACGTCTCAGTCTCTAACTTCAGAATATATGAACAATCATCATTCGAACCGTAGGAGGGAGTGAGGGTGTGATGATTTTTAAACACTCATTCCTTTCAACAAGAAGAGAGAATGAATATAGTGGAAATGTGTGTGTTCGGAAATCATTCCAATTTCCGGTCAAGTTCCTGCTTTGTTGCTCTAGAGAAAGAGTTATGAGTTATGATAGGAAATGAATCATTCTGCGTATCCGCATAGATAACAAAAATATACATCAGGAACGCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>501 395 53 51</canonical_bands>
                <polymorphic_bands>554 395 51</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>383 266 129 118 53 51</canonical_bands>
                <polymorphic_bands>383 266 171 129 51</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTAATTAGTGTTTACAATGTGGT</pcr_primer_p1>
		<pcr_primer_p2>CATCATTCCGAAATTAATAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GCTAATTAGTGTTTACAATGTGGTCCAAAGTGTCCATGATCGGTTATGTATGGGCACAACAACAGGTGCCTCCAAAGCTTCCGAACGCTTTAGAATTGAGAGAGTGACGATGAATTTTAGATTCATTTAGCTTTGTGAGTGGGTAACATTGGATCATTCTTCTGGAAACCCATTAGAAGTTCCAATATTCTTTTCACTTTTTCGTTGTTTTTTCTTTCTTTCCAACTATTAATTTCGGAATGATG</canonical_amplicon>
		<polymorphic_amplicon>GCTAATTAGTGTTTACAATGTGGTCCAAAGTGTCCATGATCGGTTATGTATGGGCACAACAACAGGTGCCTCCAAAGCTTCCGAACGCTTTAGAATTGAGAGAGTGACGATGAATTTTAGATTCATTTAGYTTTGTGAGTGGGTAACATTGGATCATTCTTCTGGAAACCCATTAGAAGTTCCAATATTCTTTTCACTTTTTCGTTGTTTTTTCTTTCTTTCCAACTATTAATTTCGGAATGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30766</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>348116</contig_pos>
        <strand>+</strand>
        <context>CARTGGTTAT[C/T]AACCAGCTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAACAGAATCAATTGACACTAGAAGCACAAATTGAGTCCAGTGGTTAT</left_flank>
        <right_flank>AACCAGCTGTAAAACTGTAAATGGACCATTCAGGAGATTACTACTTCACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTCCGAAGCCGGGAAAATTTCGAAACTTGAAAAATTTTTATTTTCTTACCTTCCATTATGTTCCGTTGCACCTATGGTCCTGATTTGAATCGTGCCAATCCCAGCGCTGGAAACTGTCCTCGAAGTCCTCGAAATTGGTCATGACGTCCAAACATCCGCTGCAACTTGAAAGTTTTGAAACTTTACCAATTCCCGTTTTCTCACCTTTGCCTTTTCCGTTTTCTTGATTAAAATTCTGTACATCCTAAAAACCTAGAAGATTCTGCAAGATCCTGAAACTTGAACGTTGGAAACTCAATACTAATTTTCCCGTATTATTCTTAACCCTGGGCGTTGCCCTCATTTTGTTAGGCTTTCACGGAGGTCACATTATTTTTAAAGAAAAGAAGGAAATCACGTAAAAAATGGTATGACATAATTTTCTGAACATCATATGACTCAACGTAAAAAACAGAATCAATTGACACTAGAAGCACAAATTGAGTCCAGTGGTTATGAACCAGCTGTAAAACTGTAAATGGACCATTCAGGAGATTACTACTTCACTTTCACTAAAACCTCACACTTTTTACAACATCCTTGCTTTGTTATTTTGCTGACTAAAAGCTGCATCCTGGGAAAATATCTCACAAATGACACTGGTTTCCTTAAATACTATTTTTTTTTCTTCAAGAGAAAACGAGAACAATGTTCAAGAATCGACAGGTTTTTTCGAAAAATTCAATTGGCCTAAACGATCCCGATTGCTTCAAAATTTTTTCTTGAGAAATCGAAAAGATTTCGAGATCCGATAGTCTGTATAAAATCGAGCTTTTTGATCTGTGAGTTCAATTCTATTTTTCAATGGAACACACCAGGCTATTCTCTGATGGAGAACCGATTCGCTCTGAAATTAAGACCAGTGGGAGGAGTACTATAAATTTTGTAGTTTTTCTTATCATTTTTTGGATTTTCATATTTCTGATTGGATATTTAGTTGGGTCCAGAACAGGTATAT</canonical>
            <polymorphic>GATTTCCGAAGCCGGGAAAATTTCGAAACTTGAAAAATTTTTATTTTCTTACCTTCCATTATGTTCCGTTGCACCTATGGTCCTGATTTGAATCGTGCCAATCCCAGCGCTGGAAACTGTCCTCGAAGTCCTCGAAATTGGTCATGACGTCCAAACATCCGCTGCAACTTGAAAGTTTTGAAACTTTACCAATTCCCGTTTTCTCACCTTTGCCTTTTCCGTTTTCTTGATTAAAATTCTGTACATCCTAAAAACCTAGAAGATTCTGCAAGATCCTGAAACTTGAACGTTGGAAACTCAATACTAATTTTCCCGTATTATTCTTAACCCTGGGCGTTGCCCTCATTTTGTTAGGCTTTCACGGAGGTCACATTATTTTTAAAGAAAAGAAGGAAATCACGTAAAAAATGGTATGACATAATTTTCTGAACATCATATGACTCAACGTAAAAAACAGAATCAATTGACACTAGAAGCACAAATTGAGTCCAGTGGTTATYAACCAGCTGTAAAACTGTAAATGGACCATTCAGGAGATTACTACTTCACTTTCACTAAAACCTCACACTTTTTACAACATCCTTGCTTTGTTATTTTGCTGACTAAAAGCTGCATCCTGGGAAAATATCTCACAAATGACACTGGTTTCCTTAAATACTATTTTTTTTTCTTCAAGAGAAAACGAGAACAATGTTCAAGAATCGACAGGTTTTTTCGAAAAATTCAATTGGCCTAAACGATCCCGATTGCTTCAAAATTTTTTCTTGAGAAATCGAAAAGATTTCGAGATCCGATAGTCTGTATAAAATCGAGCTTTTTGATCTGTGAGTTCAATTCTATTTTTCAATGGAACACACCAGGCTATTCTCTGATGGAGAACCGATTCGCTCTGAAATTAAGACCAGTGGGAGGAGTACTATAAATTTTGTAGTTTTTCTTATCATTTTTTGGATTTTCATATTTCTGATTGGATATTTAGTTGGGTCCAGAACAGGTATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTGAACATCATATGACTCAA</pcr_primer_p1>
		<pcr_primer_p2>AGTATTTAAGGAAACCAGTGTCA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>TTTCTGAACATCATATGACTCAACGTAAAAAACAGAATCAATTGACACTAGAAGCACAAATTGAGTCCAGTGGTTATGAACCAGCTGTAAAACTGTAAATGGACCATTCAGGAGATTACTACTTCACTTTCACTAAAACCTCACACTTTTTACAACATCCTTGCTTTGTTATTTTGCTGACTAAAAGCTGCATCCTGGGAAAATATCTCACAAATGACACTGGTTTCCTTAAATACT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTGAACATCATATGACTCAACGTAAAAAACAGAATCAATTGACACTAGAAGCACAAATTGAGTCCAGTGGTTATYAACCAGCTGTAAAACTGTAAATGGACCATTCAGGAGATTACTACTTCACTTTCACTAAAACCTCACACTTTTTACAACATCCTTGCTTTGTTATTTTGCTGACTAAAAGCTGCATCCTGGGAAAATATCTCACAAATGACACTGGTTTCCTTAAATACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30767</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>355034</contig_pos>
        <strand>+</strand>
        <context>AGAAAGACAA[G/T]GGGATGGGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGAGACAGGGTCAAGAGGAATAGGGAGAAGTAAAAGATAAGAAAGACAA</left_flank>
        <right_flank>GGGATGGGGGATCCAGATATCAGAGAATTTGGAAATGTGTGGATATTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAGTCTGGAGACCGGAAGGCACTGGGTTGAGGGCAGAGTCCAGATCGTAGGCGATGACGGCCACTTGATCACACATATCATTGTCAGTGAAGGACATATTGTTGAGTTGTTTTTGAGTTTTAGGGATCTGGAAAAAATACGATTGGATAAACGAATTAGAGGATGGTGAAGAGAGAAGAAGAACAATATTAGAAAATATTCTAAACTTTAGAAGACTTGATTCTGAGGGTACAGGCATCTAGAAAAAATCGATTCGGTAGAAAAGTACTGTAATAAAGTAAAAAGGAAATGGGAGAGAACCGGATGAGAATGAAGAATTAATGACTAACTATCCAAAAATATTTCCTACGTTAGGTAAGGGGCGGGGCTTAGCTAATCATTAGGCTCCACCTCCAGGGGAAATTATGGTCCCTGGGAAAGTGAGAGAAATAGTATGAGAAAAGGAGAGTGAGACAGGGTCAAGAGGAATAGGGAGAAGTAAAAGATAAGAAAGACAATGGGATGGGGGATCCAGATATCAGAGAATTTGGAAATGTGTGGATATTTTATATAGGAAAGAGGATATTTCAAATGTTTTCAAATGCAAAGTGTCGACTATTTCAAATATTTAGGAAAAACAGAGATGTTAGAATCTCAATGATCCAAAGTTTATTACGCTGTGTTACTTTTTTATCATTCATATTGTCTAATGAGTAAAAAGTAAGGTCTGGAATCATATAAAAGTGCGTTGAGTCTCGGGATGTTGAGGATTACTGTAGTAAATGATTTTCGAAAATACAATAATCTAATTATTAGCTTCACACTCTAGAATCTGAACTGTACAGAGAACAACCGCAAATGGAAATCTGAAACTTGAGAATTTATCTGAAAAAAAAGTCCAAACGATGTTTAAACGAGTTAAAAAACAACATCAGAGTTTGGATTTTAAAAAGTCCTCATAACCCTTCGACCATGTGGCCGATCCTTTGAAATTCCAAAGTTATTTTTCTTGAATTTTT</canonical>
            <polymorphic>AAGAGTCTGGAGACCGGAAGGCACTGGGTTGAGGGCAGAGTCCAGATCGTAGGCGATGACGGCCACTTGATCACACATATCATTGTCAGTGAAGGACATATTGTTGAGTTGTTTTTGAGTTTTAGGGATCTGGAAAAAATACGATTGGATAAACGAATTAGAGGATGGTGAAGAGAGAAGAAGAACAATATTAGAAAATATTCTAAACTTTAGAAGACTTGATTCTGAGGGTACAGGCATCTAGAAAAAATCGATTCGGTAGAAAAGTACTGTAATAAAGTAAAAAGGAAATGGGAGAGAACCGGATGAGAATGAAGAATTAATGACTAACTATCCAAAAATATTTCCTACGTTAGGTAAGGGGCGGGGCTTAGCTAATCATTAGGCTCCACCTCCAGGGGAAATTATGGTCCCTGGGAAAGTGAGAGAAATAGTATGAGAAAAGGAGAGTGAGACAGGGTCAAGAGGAATAGGGAGAAGTAAAAGATAAGAAAGACAAKGGGATGGGGGATCCAGATATCAGAGAATTTGGAAATGTGTGGATATTTTATATAGGAAAGAGGATATTTCAAATGTTTTCAAATGCAAAGTGTCGACTATTTCAAATATTTAGGAAAAACAGAGATGTTAGAATCTCAATGATCCAAAGTTTATTACGCTGTGTTACTTTTTTATCATTCATATTGTCTAATGAGTAAAAAGTAAGGTCTGGAATCATATAAAAGTGCGTTGAGTCTCGGGATGTTGAGGATTACTGTAGTAAATGATTTTCGAAAATACAATAATCTAATTATTAGCTTCACACTCTAGAATCTGAACTGTACAGAGAACAACCGCAAATGGAAATCTGAAACTTGAGAATTTATCTGAAAAAAAAGTCCAAACGATGTTTAAACGAGTTAAAAAACAACATCAGAGTTTGGATTTTAAAAAGTCCTCATAACCCTTCGACCATGTGGCCGATCCTTTGAAATTCCAAAGTTATTTTTCTTGAATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTATCCAAAAATATTTCCTACG</pcr_primer_p1>
		<pcr_primer_p2>CATTTGAAATATCCTCTTTCCTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AACTATCCAAAAATATTTCCTACGTTAGGTAAGGGGCGGGGCTTAGCTAATCATTAGGCTCCACCTCCAGGGGAAATTATGGTCCCTGGGAAAGTGAGAGAAATAGTATGAGAAAAGGAGAGTGAGACAGGGTCAAGAGGAATAGGGAGAAGTAAAAGATAAGAAAGACAATGGGATGGGGGATCCAGATATCAGAGAATTTGGAAATGTGTGGATATTTTATATAGGAAAGAGGATATTTCAAATG</canonical_amplicon>
		<polymorphic_amplicon>AACTATCCAAAAATATTTCCTACGTTAGGTAAGGGGCGGGGCTTAGCTAATCATTAGGCTCCACCTCCAGGGGAAATTATGGTCCCTGGGAAAGTGAGAGAAATAGTATGAGAAAAGGAGAGTGAGACAGGGTCAAGAGGAATAGGGAGAAGTAAAAGATAAGAAAGACAAKGGGATGGGGGATCCAGATATCAGAGAATTTGGAAATGTGTGGATATTTTATATAGGAAAGAGGATATTTCAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30768</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>357413</contig_pos>
        <strand>-</strand>
        <context>TATAAAATAT[A/G]CAKACATTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACATGCATTTGAAAACATTTGAAATATCCTCTTTCCTATATAAAATAT</left_flank>
        <right_flank>CAAACATTTCCAAATTCTCTGATATCTGGATCCCCCATCCCCTTGTCTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATGATCGGCCACATGTTCGAAGGGTTGTGATGACTTTTTTGAATCCAAACTCTGAAGTTATTTTTTAACTCGTTTGAACATCGTTTGGACTTTTTTCAGATAAATTCTCAAATTTCAGATTTCTGAATTCTTCATTTTTTTAGATTTCCATTTGCGGATGTTGTCTTAATAGTTCATATTCTAGAGTGTGAAGCTAATAATTTGATTACTGCATTTTCAAAAAGCATTTACTACAGTAATCCTTAACATCCTGAGACTCAACGCACGATTATATAATTCCGGGCCTTACTTTTTACTCATTAGACAATATGAATGGTAAGAATGTAAAACAGCATAATGAATGTTTGATCATTCAGGTTCTAACATCTCTGTTTTTCCTAAATATTTGAAATAGTCACCACTTTTTACGTTCTTGATGGTCAAGTCCGGTCTGGATTTGTGAAAAAAAAACATGCATTTGAAAACATTTGAAATATCCTCTTTCCTATATAAAATATTCAAACATTTCCAAATTCTCTGATATCTGGATCCCCCATCCCCTTGTCTTTCTTATCTTTTACTTCTCCCTATTCCTCTTGACCCTGTCTCACTCTCCTTTTCTCATACTATTTCTCTCACTTTCCCAGGGACCATAATTTCCCCTGGAGGTGGAGCCTAATGATTAGCTAAGCCCCGCCCCTTACCTAACGTAGGAAATATTTTTGGATAGTTAGTCATTAATTCCTCATTTTCATCCGGTTCTCTCCCATTTCCTTTTTACTTTATTACAGTACTTTTCTACCGAATCGATTTTTTCTAGATGCCTGTACCCTCAGAATCAAGTCTTCTAAAGTTTAGAATATTTTCTAATATTGTTCTTCTTCTCTCTTCACCATCCTCTAATTCGTTTAACCAATCGTATTTTTTCCAGATCCCTAAAACTCAAAAACAACTCGACAATATGTCCTTCACTGACAATGATATGTGTGATCAAGTGGCCGTCATCGCCTACGATCTGG</canonical>
            <polymorphic>AAATGATCGGCCACATGTTCGAAGGGTTGTGATGACTTTTTTGAATCCAAACTCTGAAGTTATTTTTTAACTCGTTTGAACATCGTTTGGACTTTTTTCAGATAAATTCTCAAATTTCAGATTTCTGAATTCTTCATTTTTTTAGATTTCCATTTGCGGATGTTGTCTTAATAGTTCATATTCTAGAGTGTGAAGCTAATAATTTGATTACTGCATTTTCAAAAAGCATTTACTACAGTAATCCTTAACATCCTGAGACTCAACGCACGATTATATAATTCCGGGCCTTACTTTTTACTCATTAGACAATATGAATGGTAAGAATGTAAAACAGCATAATGAATGTTTGATCATTCAGGTTCTAACATCTCTGTTTTTCCTAAATATTTGAAATAGTCACCACTTTTTACGTTCTTGATGGTCAAGTCCGGTCTGGATTTGTGAAAAAAAAACATGCATTTGAAAACATTTGAAATATCCTCTTTCCTATATAAAATATRCAAACATTTCCAAATTCTCTGATATCTGGATCCCCCATCCCCTTGTCTTTCTTATCTTTTACTTCTCCCTATTCCTCTTGACCCTGTCTCACTCTCCTTTTCTCATACTATTTCTCTCACTTTCCCAGGGACCATAATTTCCCCTGGAGGTGGAGCCTAATGATTAGCTAAGCCCCGCCCCTTACCTAACGTAGGAAATATTTTTGGATAGTTAGTCATTAATTCCTCATTTTCATCCGGTTCTCTCCCATTTCCTTTTTACTTTATTACAGTACTTTTCTACCGAATCGATTTTTTCTAGATGCCTGTACCCTCAGAATCAAGTCTTCTAAAGTTTAGAATATTTTCTAATATTGTTCTTCTTCTCTCTTCACCATCCTCTAATTCGTTTAACCAATCGTATTTTTTCCAGATCCCTAAAACTCAAAAACAACTCGACAATATGTCCTTCACTGACAATGATATGTGTGATCAAGTGGCCGTCATCGCCTACGATCTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>385 202 148 143 112 10</canonical_bands>
                <polymorphic_bands>385 314 148 143 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGACAATATGAATGGTAAGAATG</pcr_primer_p1>
		<pcr_primer_p2>GGGAGAAGTAAAAGATAAGAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>TTAGACAATATGAATGGTAAGAATGTAAAACAGCATAATGAATGTTTGATCATTCAGGTTCTAACATCTCTGTTTTTCCTAAATATTTGAAATAGTCACCACTTTTTACGTTCTTGATGGTCAAGTCCGGTCTGGATTTGTGAAAAAAAAACATGCATTTGAAAACATTTGAAATATCCTCTTTCCTATATAAAATATTCAAACATTTCCAAATTCTCTGATATCTGGATCCCCCATCCCCTTGTCTTTCTTATCTTTTACTTCTCCC</canonical_amplicon>
		<polymorphic_amplicon>TTAGACAATATGAATGGTAAGAATGTAAAACAGCATAATGAATGTTTGATCATTCAGGTTCTAACATCTCTGTTTTTCCTAAATATTTGAAATAGTCACCACTTTTTACGTTCTTGATGGTCAAGTCCGGTCTGGATTTGTGAAAAAAAAACATGCATTTGAAAACATTTGAAATATCCTCTTTCCTATATAAAATATRCAAACATTTCCAAATTCTCTGATATCTGGATCCCCCATCCCCTTGTCTTTCTTATCTTTTACTTCTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30769</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>357416</contig_pos>
        <strand>-</strand>
        <context>AAAATATRCA[G/T]ACATTTCCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATGCATTTGAAAACATTTGAAATATCCTCTTTCCTATATAAAATATTCA</left_flank>
        <right_flank>ACATTTCCAAATTCTCTGATATCTGGATCCCCCATCCCCTTGTCTTTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATCGGCCACATGTTCGAAGGGTTGTGATGACTTTTTTGAATCCAAACTCTGAAGTTATTTTTTAACTCGTTTGAACATCGTTTGGACTTTTTTCAGATAAATTCTCAAATTTCAGATTTCTGAATTCTTCATTTTTTTAGATTTCCATTTGCGGATGTTGTCTTAATAGTTCATATTCTAGAGTGTGAAGCTAATAATTTGATTACTGCATTTTCAAAAAGCATTTACTACAGTAATCCTTAACATCCTGAGACTCAACGCACGATTATATAATTCCGGGCCTTACTTTTTACTCATTAGACAATATGAATGGTAAGAATGTAAAACAGCATAATGAATGTTTGATCATTCAGGTTCTAACATCTCTGTTTTTCCTAAATATTTGAAATAGTCACCACTTTTTACGTTCTTGATGGTCAAGTCCGGTCTGGATTTGTGAAAAAAAAACATGCATTTGAAAACATTTGAAATATCCTCTTTCCTATATAAAATATTCAAACATTTCCAAATTCTCTGATATCTGGATCCCCCATCCCCTTGTCTTTCTTATCTTTTACTTCTCCCTATTCCTCTTGACCCTGTCTCACTCTCCTTTTCTCATACTATTTCTCTCACTTTCCCAGGGACCATAATTTCCCCTGGAGGTGGAGCCTAATGATTAGCTAAGCCCCGCCCCTTACCTAACGTAGGAAATATTTTTGGATAGTTAGTCATTAATTCCTCATTTTCATCCGGTTCTCTCCCATTTCCTTTTTACTTTATTACAGTACTTTTCTACCGAATCGATTTTTTCTAGATGCCTGTACCCTCAGAATCAAGTCTTCTAAAGTTTAGAATATTTTCTAATATTGTTCTTCTTCTCTCTTCACCATCCTCTAATTCGTTTAACCAATCGTATTTTTTCCAGATCCCTAAAACTCAAAAACAACTCGACAATATGTCCTTCACTGACAATGATATGTGTGATCAAGTGGCCGTCATCGCCTACGATCTGGACT</canonical>
            <polymorphic>TGATCGGCCACATGTTCGAAGGGTTGTGATGACTTTTTTGAATCCAAACTCTGAAGTTATTTTTTAACTCGTTTGAACATCGTTTGGACTTTTTTCAGATAAATTCTCAAATTTCAGATTTCTGAATTCTTCATTTTTTTAGATTTCCATTTGCGGATGTTGTCTTAATAGTTCATATTCTAGAGTGTGAAGCTAATAATTTGATTACTGCATTTTCAAAAAGCATTTACTACAGTAATCCTTAACATCCTGAGACTCAACGCACGATTATATAATTCCGGGCCTTACTTTTTACTCATTAGACAATATGAATGGTAAGAATGTAAAACAGCATAATGAATGTTTGATCATTCAGGTTCTAACATCTCTGTTTTTCCTAAATATTTGAAATAGTCACCACTTTTTACGTTCTTGATGGTCAAGTCCGGTCTGGATTTGTGAAAAAAAAACATGCATTTGAAAACATTTGAAATATCCTCTTTCCTATATAAAATATTCAKACATTTCCAAATTCTCTGATATCTGGATCCCCCATCCCCTTGTCTTTCTTATCTTTTACTTCTCCCTATTCCTCTTGACCCTGTCTCACTCTCCTTTTCTCATACTATTTCTCTCACTTTCCCAGGGACCATAATTTCCCCTGGAGGTGGAGCCTAATGATTAGCTAAGCCCCGCCCCTTACCTAACGTAGGAAATATTTTTGGATAGTTAGTCATTAATTCCTCATTTTCATCCGGTTCTCTCCCATTTCCTTTTTACTTTATTACAGTACTTTTCTACCGAATCGATTTTTTCTAGATGCCTGTACCCTCAGAATCAAGTCTTCTAAAGTTTAGAATATTTTCTAATATTGTTCTTCTTCTCTCTTCACCATCCTCTAATTCGTTTAACCAATCGTATTTTTTCCAGATCCCTAAAACTCAAAAACAACTCGACAATATGTCCTTCACTGACAATGATATGTGTGATCAAGTGGCCGTCATCGCCTACGATCTGGACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGACAATATGAATGGTAAGAATG</pcr_primer_p1>
		<pcr_primer_p2>GGGAGAAGTAAAAGATAAGAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>TTAGACAATATGAATGGTAAGAATGTAAAACAGCATAATGAATGTTTGATCATTCAGGTTCTAACATCTCTGTTTTTCCTAAATATTTGAAATAGTCACCACTTTTTACGTTCTTGATGGTCAAGTCCGGTCTGGATTTGTGAAAAAAAAACATGCATTTGAAAACATTTGAAATATCCTCTTTCCTATATAAAATATTCAAACATTTCCAAATTCTCTGATATCTGGATCCCCCATCCCCTTGTCTTTCTTATCTTTTACTTCTCCC</canonical_amplicon>
		<polymorphic_amplicon>TTAGACAATATGAATGGTAAGAATGTAAAACAGCATAATGAATGTTTGATCATTCAGGTTCTAACATCTCTGTTTTTCCTAAATATTTGAAATAGTCACCACTTTTTACGTTCTTGATGGTCAAGTCCGGTCTGGATTTGTGAAAAAAAAACATGCATTTGAAAACATTTGAAATATCCTCTTTCCTATATAAAATATTCAKACATTTCCAAATTCTCTGATATCTGGATCCCCCATCCCCTTGTCTTTCTTATCTTTTACTTCTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30770</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>399074</contig_pos>
        <strand>+</strand>
        <context>GTTGAATACG[C/T]CCTCGACTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGGAGACAGCAATGCTTCTGGGTTGACCCTTTGAGGTTCGTTGAATACG</left_flank>
        <right_flank>CCTCGACTATATGATCAAGTTTTTGGTGTCCGATGAGAAGCTTCATGTGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGTAGCTAAACTGGCTTCTGTATGAGTTGAGTTAGATCCAATAATATTATAGGTGGCATTATTAACATTAAAATTGATCGTGTCTACAACCATTGCCATAGCGACTGCATTATCACCAAGTCTATAAAACAATGCTTCCAGAAAAATCTTTAAAGGTAAATACTTACGATTTAGAAGTCGGATAATAATAGGCAGAAGTTATCCAAACATGAGAGACTGGCAATTTTCTAGTGAGGCGTCTAGTTTGATCCTCTATTAAACCGGATTTCAATTCTGATAATGGTTCCGGGTTCAGGCTTTCTTCACTCTTAAAATTAGTTTCGGCGTCTGCCATTTCGAAATTTAAAGGTCTATTTAATGCAACATAGGAGTTATAAAGCAGAACAATTAATAGAAGGATGGTGGTTATCAGAAAGCATTTCCGCCGTTTCATAATGTAACGACTCCCTGGAGACAGCAATGCTTCTGGGTTGACCCTTTGAGGTTCGTTGAATACGTCCTCGACTATATGATCAAGTTTTTGGTGTCCGATGAGAAGCTTCATGTGGACAAAATGATTCAGAATCGAAGAAAATGAAGGCAGGACAAGAATTCGAGATTCAAAAAAAAGTTATAAAAAATAGAGATTGAAATCTCTACCTATTTTTGAAATCCGTTCAAATAGTATAGCCAGTTTCAGTCGGAAAAGATTTCATCAAGAAGTCTCGGAACAAATATATTCGTTAGAAAAAATTATGACCAGACATCTAAAAATTGAAAAAATATTTCAAATTAAAGTGATTGTCAGAGCAATATCATACTTCCAGAAACTTTTTGTGGTGCATGATCTCATTTATTCAACAACATGGTCAAATCAAAAACCGAATTCTAAATACGCTACAACTGGTAGATATAAGTTTGGAATTTCATTTTTTAACTGCTTTAAGTAATCGACTACTGGGCCTCCGGCTTGTAACTTCTGGTCAGAAGTTGAGGAAGTTTCGGCTTGTGGACGAGTA</canonical>
            <polymorphic>GAAGTAGCTAAACTGGCTTCTGTATGAGTTGAGTTAGATCCAATAATATTATAGGTGGCATTATTAACATTAAAATTGATCGTGTCTACAACCATTGCCATAGCGACTGCATTATCACCAAGTCTATAAAACAATGCTTCCAGAAAAATCTTTAAAGGTAAATACTTACGATTTAGAAGTCGGATAATAATAGGCAGAAGTTATCCAAACATGAGAGACTGGCAATTTTCTAGTGAGGCGTCTAGTTTGATCCTCTATTAAACCGGATTTCAATTCTGATAATGGTTCCGGGTTCAGGCTTTCTTCACTCTTAAAATTAGTTTCGGCGTCTGCCATTTCGAAATTTAAAGGTCTATTTAATGCAACATAGGAGTTATAAAGCAGAACAATTAATAGAAGGATGGTGGTTATCAGAAAGCATTTCCGCCGTTTCATAATGTAACGACTCCCTGGAGACAGCAATGCTTCTGGGTTGACCCTTTGAGGTTCGTTGAATACGYCCTCGACTATATGATCAAGTTTTTGGTGTCCGATGAGAAGCTTCATGTGGACAAAATGATTCAGAATCGAAGAAAATGAAGGCAGGACAAGAATTCGAGATTCAAAAAAAAGTTATAAAAAATAGAGATTGAAATCTCTACCTATTTTTGAAATCCGTTCAAATAGTATAGCCAGTTTCAGTCGGAAAAGATTTCATCAAGAAGTCTCGGAACAAATATATTCGTTAGAAAAAATTATGACCAGACATCTAAAAATTGAAAAAATATTTCAAATTAAAGTGATTGTCAGAGCAATATCATACTTCCAGAAACTTTTTGTGGTGCATGATCTCATTTATTCAACAACATGGTCAAATCAAAAACCGAATTCTAAATACGCTACAACTGGTAGATATAAGTTTGGAATTTCATTTTTTAACTGCTTTAAGTAATCGACTACTGGGCCTCCGGCTTGTAACTTCTGGTCAGAAGTTGAGGAAGTTTCGGCTTGTGGACGAGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAAAGGTCTATTTAATGCAACA</pcr_primer_p1>
		<pcr_primer_p2>CTTCATTTTCTTCGATTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TTTAAAGGTCTATTTAATGCAACATAGGAGTTATAAAGCAGAACAATTAATAGAAGGATGGTGGTTATCAGAAAGCATTTCCGCCGTTTCATAATGTAACGACTCCCTGGAGACAGCAATGCTTCTGGGTTGACCCTTTGAGGTTCGTTGAATACGTCCTCGACTATATGATCAAGTTTTTGGTGTCCGATGAGAAGCTTCATGTGGACAAAATGATTCAGAATCGAAGAAAATGAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTAAAGGTCTATTTAATGCAACATAGGAGTTATAAAGCAGAACAATTAATAGAAGGATGGTGGTTATCAGAAAGCATTTCCGCCGTTTCATAATGTAACGACTCCCTGGAGACAGCAATGCTTCTGGGTTGACCCTTTGAGGTTCGTTGAATACGYCCTCGACTATATGATCAAGTTTTTGGTGTCCGATGAGAAGCTTCATGTGGACAAAATGATTCAGAATCGAAGAAAATGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30771</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>399167</contig_pos>
        <strand>+</strand>
        <context>CAGGACAAGA[A/T]TTCGAGATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCATGTGGACAAAATGATTCAGAATCGAAGAAAATGAAGGCAGGACAAGA</left_flank>
        <right_flank>TTCGAGATTCAAAAAAAAGTTATAAAAAATAGAGATTGAAATCTCTACCT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGCCATAGCGACTGCATTATCACCAAGTCTATAAAACAATGCTTCCAGAAAAATCTTTAAAGGTAAATACTTACGATTTAGAAGTCGGATAATAATAGGCAGAAGTTATCCAAACATGAGAGACTGGCAATTTTCTAGTGAGGCGTCTAGTTTGATCCTCTATTAAACCGGATTTCAATTCTGATAATGGTTCCGGGTTCAGGCTTTCTTCACTCTTAAAATTAGTTTCGGCGTCTGCCATTTCGAAATTTAAAGGTCTATTTAATGCAACATAGGAGTTATAAAGCAGAACAATTAATAGAAGGATGGTGGTTATCAGAAAGCATTTCCGCCGTTTCATAATGTAACGACTCCCTGGAGACAGCAATGCTTCTGGGTTGACCCTTTGAGGTTCGTTGAATACGTCCTCGACTATATGATCAAGTTTTTGGTGTCCGATGAGAAGCTTCATGTGGACAAAATGATTCAGAATCGAAGAAAATGAAGGCAGGACAAGAATTCGAGATTCAAAAAAAAGTTATAAAAAATAGAGATTGAAATCTCTACCTATTTTTGAAATCCGTTCAAATAGTATAGCCAGTTTCAGTCGGAAAAGATTTCATCAAGAAGTCTCGGAACAAATATATTCGTTAGAAAAAATTATGACCAGACATCTAAAAATTGAAAAAATATTTCAAATTAAAGTGATTGTCAGAGCAATATCATACTTCCAGAAACTTTTTGTGGTGCATGATCTCATTTATTCAACAACATGGTCAAATCAAAAACCGAATTCTAAATACGCTACAACTGGTAGATATAAGTTTGGAATTTCATTTTTTAACTGCTTTAAGTAATCGACTACTGGGCCTCCGGCTTGTAACTTCTGGTCAGAAGTTGAGGAAGTTTCGGCTTGTGGACGAGTATTAGCCAGGTTCTGGTCGGAACTTGACCAAAAACATCTATTTAGCAGGCCATGGTCAGATTATGGTTTTAACTTGAATTGAGAACGACTACCA</canonical>
            <polymorphic>ATTGCCATAGCGACTGCATTATCACCAAGTCTATAAAACAATGCTTCCAGAAAAATCTTTAAAGGTAAATACTTACGATTTAGAAGTCGGATAATAATAGGCAGAAGTTATCCAAACATGAGAGACTGGCAATTTTCTAGTGAGGCGTCTAGTTTGATCCTCTATTAAACCGGATTTCAATTCTGATAATGGTTCCGGGTTCAGGCTTTCTTCACTCTTAAAATTAGTTTCGGCGTCTGCCATTTCGAAATTTAAAGGTCTATTTAATGCAACATAGGAGTTATAAAGCAGAACAATTAATAGAAGGATGGTGGTTATCAGAAAGCATTTCCGCCGTTTCATAATGTAACGACTCCCTGGAGACAGCAATGCTTCTGGGTTGACCCTTTGAGGTTCGTTGAATACGTCCTCGACTATATGATCAAGTTTTTGGTGTCCGATGAGAAGCTTCATGTGGACAAAATGATTCAGAATCGAAGAAAATGAAGGCAGGACAAGAWTTCGAGATTCAAAAAAAAGTTATAAAAAATAGAGATTGAAATCTCTACCTATTTTTGAAATCCGTTCAAATAGTATAGCCAGTTTCAGTCGGAAAAGATTTCATCAAGAAGTCTCGGAACAAATATATTCGTTAGAAAAAATTATGACCAGACATCTAAAAATTGAAAAAATATTTCAAATTAAAGTGATTGTCAGAGCAATATCATACTTCCAGAAACTTTTTGTGGTGCATGATCTCATTTATTCAACAACATGGTCAAATCAAAAACCGAATTCTAAATACGCTACAACTGGTAGATATAAGTTTGGAATTTCATTTTTTAACTGCTTTAAGTAATCGACTACTGGGCCTCCGGCTTGTAACTTCTGGTCAGAAGTTGAGGAAGTTTCGGCTTGTGGACGAGTATTAGCCAGGTTCTGGTCGGAACTTGACCAAAAACATCTATTTAGCAGGCCATGGTCAGATTATGGTTTTAACTTGAATTGAGAACGACTACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>274 250 248 190 38</canonical_bands>
                <polymorphic_bands>524 248 190 38</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>498 274 228</canonical_bands>
                <polymorphic_bands>772 228</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>204 172 141 130 94 48 46 43 38 27 21 18 18</canonical_bands>
                <polymorphic_bands>345 172 130 94 48 46 43 38 27 21 18 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATATGATCAAGTTTTTGGTGTC</pcr_primer_p1>
		<pcr_primer_p2>CAATTTTTAGATGTCTGGTCATAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTATATGATCAAGTTTTTGGTGTCCGATGAGAAGCTTCATGTGGACAAAATGATTCAGAATCGAAGAAAATGAAGGCAGGACAAGAATTCGAGATTCAAAAAAAAGTTATAAAAAATAGAGATTGAAATCTCTACCTATTTTTGAAATCCGTTCAAATAGTATAGCCAGTTTCAGTCGGAAAAGATTTCATCAAGAAGTCTCGGAACAAATATATTCGTTAGAAAAAATTATGACCAGACATCTAAAAATTG</canonical_amplicon>
		<polymorphic_amplicon>CTATATGATCAAGTTTTTGGTGTCCGATGAGAAGCTTCATGTGGACAAAATGATTCAGAATCGAAGAAAATGAAGGCAGGACAAGAWTTCGAGATTCAAAAAAAAGTTATAAAAAATAGAGATTGAAATCTCTACCTATTTTTGAAATCCGTTCAAATAGTATAGCCAGTTTCAGTCGGAAAAGATTTCATCAAGAAGTCTCGGAACAAATATATTCGTTAGAAAAAATTATGACCAGACATCTAAAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30772</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>399267</contig_pos>
        <strand>+</strand>
        <context>CGGAAAAGAT[C/T]TCATCAAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTTTTGAAATCCGTTCAAATAGTATAGCCAGTTTCAGTCGGAAAAGAT</left_flank>
        <right_flank>TCATCAAGAAGTCTCGGAACAAATATATTCGTTAGAAAAAATTATGACCA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAGAAGTTATCCAAACATGAGAGACTGGCAATTTTCTAGTGAGGCGTCTAGTTTGATCCTCTATTAAACCGGATTTCAATTCTGATAATGGTTCCGGGTTCAGGCTTTCTTCACTCTTAAAATTAGTTTCGGCGTCTGCCATTTCGAAATTTAAAGGTCTATTTAATGCAACATAGGAGTTATAAAGCAGAACAATTAATAGAAGGATGGTGGTTATCAGAAAGCATTTCCGCCGTTTCATAATGTAACGACTCCCTGGAGACAGCAATGCTTCTGGGTTGACCCTTTGAGGTTCGTTGAATACGTCCTCGACTATATGATCAAGTTTTTGGTGTCCGATGAGAAGCTTCATGTGGACAAAATGATTCAGAATCGAAGAAAATGAAGGCAGGACAAGAATTCGAGATTCAAAAAAAAGTTATAAAAAATAGAGATTGAAATCTCTACCTATTTTTGAAATCCGTTCAAATAGTATAGCCAGTTTCAGTCGGAAAAGATTTCATCAAGAAGTCTCGGAACAAATATATTCGTTAGAAAAAATTATGACCAGACATCTAAAAATTGAAAAAATATTTCAAATTAAAGTGATTGTCAGAGCAATATCATACTTCCAGAAACTTTTTGTGGTGCATGATCTCATTTATTCAACAACATGGTCAAATCAAAAACCGAATTCTAAATACGCTACAACTGGTAGATATAAGTTTGGAATTTCATTTTTTAACTGCTTTAAGTAATCGACTACTGGGCCTCCGGCTTGTAACTTCTGGTCAGAAGTTGAGGAAGTTTCGGCTTGTGGACGAGTATTAGCCAGGTTCTGGTCGGAACTTGACCAAAAACATCTATTTAGCAGGCCATGGTCAGATTATGGTTTTAACTTGAATTGAGAACGACTACCATGTCAGGATCTTGTCAATTTTTTGTTTAGTCTCCTTTAGTAACGGTCTTATCCGGTCAACCTCTGATCAACTTCCGCCGAGAAATTGCCGACGACGCCCC</canonical>
            <polymorphic>GCAGAAGTTATCCAAACATGAGAGACTGGCAATTTTCTAGTGAGGCGTCTAGTTTGATCCTCTATTAAACCGGATTTCAATTCTGATAATGGTTCCGGGTTCAGGCTTTCTTCACTCTTAAAATTAGTTTCGGCGTCTGCCATTTCGAAATTTAAAGGTCTATTTAATGCAACATAGGAGTTATAAAGCAGAACAATTAATAGAAGGATGGTGGTTATCAGAAAGCATTTCCGCCGTTTCATAATGTAACGACTCCCTGGAGACAGCAATGCTTCTGGGTTGACCCTTTGAGGTTCGTTGAATACGTCCTCGACTATATGATCAAGTTTTTGGTGTCCGATGAGAAGCTTCATGTGGACAAAATGATTCAGAATCGAAGAAAATGAAGGCAGGACAAGAATTCGAGATTCAAAAAAAAGTTATAAAAAATAGAGATTGAAATCTCTACCTATTTTTGAAATCCGTTCAAATAGTATAGCCAGTTTCAGTCGGAAAAGATYTCATCAAGAAGTCTCGGAACAAATATATTCGTTAGAAAAAATTATGACCAGACATCTAAAAATTGAAAAAATATTTCAAATTAAAGTGATTGTCAGAGCAATATCATACTTCCAGAAACTTTTTGTGGTGCATGATCTCATTTATTCAACAACATGGTCAAATCAAAAACCGAATTCTAAATACGCTACAACTGGTAGATATAAGTTTGGAATTTCATTTTTTAACTGCTTTAAGTAATCGACTACTGGGCCTCCGGCTTGTAACTTCTGGTCAGAAGTTGAGGAAGTTTCGGCTTGTGGACGAGTATTAGCCAGGTTCTGGTCGGAACTTGACCAAAAACATCTATTTAGCAGGCCATGGTCAGATTATGGTTTTAACTTGAATTGAGAACGACTACCATGTCAGGATCTTGTCAATTTTTTGTTTAGTCTCCTTTAGTAACGGTCTTATCCGGTCAACCTCTGATCAACTTCCGCCGAGAAATTGCCGACGACGCCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCAGAATCGAAGAAAATGAA</pcr_primer_p1>
		<pcr_primer_p2>CTGGAAGTATGATATTGCTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCAGAATCGAAGAAAATGAAGGCAGGACAAGAATTCGAGATTCAAAAAAAAGTTATAAAAAATAGAGATTGAAATCTCTACCTATTTTTGAAATCCGTTCAAATAGTATAGCCAGTTTCAGTCGGAAAAGATTTCATCAAGAAGTCTCGGAACAAATATATTCGTTAGAAAAAATTATGACCAGACATCTAAAAATTGAAAAAATATTTCAAATTAAAGTGATTGTCAGAGCAATATCATACTTCCAG</canonical_amplicon>
		<polymorphic_amplicon>ATTCAGAATCGAAGAAAATGAAGGCAGGACAAGAATTCGAGATTCAAAAAAAAGTTATAAAAAATAGAGATTGAAATCTCTACCTATTTTTGAAATCCGTTCAAATAGTATAGCCAGTTTCAGTCGGAAAAGATYTCATCAAGAAGTCTCGGAACAAATATATTCGTTAGAAAAAATTATGACCAGACATCTAAAAATTGAAAAAATATTTCAAATTAAAGTGATTGTCAGAGCAATATCATACTTCCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30773</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>466812</contig_pos>
        <strand>+</strand>
        <context>AGATAGATTA[A/G]AGGTGGATGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACACCACCAATTAATTCCTTGAAGTTTTATCAGCATCTGAGATAGATTA</left_flank>
        <right_flank>AGGTGGATGTCTGTGGCATCACTTGTGATTCATCGACAATAACTCTCCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTCGAAGTGTTCCAAACTTTTGAAGTACTTTATCACGACATGCTAGGTCAGCAAGGAAAATATCATCAGCCGCTTGTCCGATGGCCCTCGCTACGGAATCTCGCAACTTTTCTTTTTCCTCTTTGTACTGACGCTCCTCTACGGCACTGAAGCAAATTCGTTTTTCGATTTCTGTCAACTCCGGAAGATCGATTTGATGTTCCACATCTATTTTCATTTTTCTACTCATGATACGACCAAGTATCTCGAGAAGGAGAATCGGCGGCAGATCTTTTGGATTTTTCTCATCAAACAATTCCTTTTGATCATGAATTTGAAGTACGAAATTGAGGTACTGAGGATGCACATAATTAGAGAAAAAATCCGTGTTGTTGTAGGGGAACAAATCCAGAAATGTGAAGAGGGGATTCATGTCGGAAATAGTTCTGACAAGAGGAGTTCCCGTAACACACCACCAATTAATTCCTTGAAGTTTTATCAGCATCTGAGATAGATTAGAGGTGGATGTCTGTGGCATCACTTGTGATTCATCGACAATAACTCTCCAGAATTTGACATGAACCAGAGAAGTTGTCAAATAATAATTGATCGAGTTGGTCCGAAAGTTTCTTCCTGTAAGATTGATTTTTTTCAATTAAAATGAAGACAATCCTTACTTTGATCTTTTTTATCAGAAAAGTTCATTTCTCTACGAAGTGTGTCGTATGTTGTCAGAACAACATCAAATTTATCCATTTCGCACGGTTGCAGATATCCGTGTTTTTTGACACCAAAATAGAACTGCAAAAAAAGATTTTATCTGAAATATGTTTTTCATGAGAGCTCTTACCATCACTTTGAAATCATCCGAACAGTGTTTGGCAACCTCAGTGAACCATTGGAAAATCAAACTTTCGGGAACTATGATCAATGTGGTTTTCACCAAACGTCTGGTGTTTTTAAGAGTCATACACTCGGGACAGTAAAACAATTCGTCATCACAAGTATCGAAATTCCAT</canonical>
            <polymorphic>CTCTCGAAGTGTTCCAAACTTTTGAAGTACTTTATCACGACATGCTAGGTCAGCAAGGAAAATATCATCAGCCGCTTGTCCGATGGCCCTCGCTACGGAATCTCGCAACTTTTCTTTTTCCTCTTTGTACTGACGCTCCTCTACGGCACTGAAGCAAATTCGTTTTTCGATTTCTGTCAACTCCGGAAGATCGATTTGATGTTCCACATCTATTTTCATTTTTCTACTCATGATACGACCAAGTATCTCGAGAAGGAGAATCGGCGGCAGATCTTTTGGATTTTTCTCATCAAACAATTCCTTTTGATCATGAATTTGAAGTACGAAATTGAGGTACTGAGGATGCACATAATTAGAGAAAAAATCCGTGTTGTTGTAGGGGAACAAATCCAGAAATGTGAAGAGGGGATTCATGTCGGAAATAGTTCTGACAAGAGGAGTTCCCGTAACACACCACCAATTAATTCCTTGAAGTTTTATCAGCATCTGAGATAGATTARAGGTGGATGTCTGTGGCATCACTTGTGATTCATCGACAATAACTCTCCAGAATTTGACATGAACCAGAGAAGTTGTCAAATAATAATTGATCGAGTTGGTCCGAAAGTTTCTTCCTGTAAGATTGATTTTTTTCAATTAAAATGAAGACAATCCTTACTTTGATCTTTTTTATCAGAAAAGTTCATTTCTCTACGAAGTGTGTCGTATGTTGTCAGAACAACATCAAATTTATCCATTTCGCACGGTTGCAGATATCCGTGTTTTTTGACACCAAAATAGAACTGCAAAAAAAGATTTTATCTGAAATATGTTTTTCATGAGAGCTCTTACCATCACTTTGAAATCATCCGAACAGTGTTTGGCAACCTCAGTGAACCATTGGAAAATCAAACTTTCGGGAACTATGATCAATGTGGTTTTCACCAAACGTCTGGTGTTTTTAAGAGTCATACACTCGGGACAGTAAAACAATTCGTCATCACAAGTATCGAAATTCCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACTGAGGATGCACATAATTAGA</pcr_primer_p1>
		<pcr_primer_p2>TTATTTGACAACTTCTCTGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTACTGAGGATGCACATAATTAGAGAAAAAATCCGTGTTGTTGTAGGGGAACAAATCCAGAAATGTGAAGAGGGGATTCATGTCGGAAATAGTTCTGACAAGAGGAGTTCCCGTAACACACCACCAATTAATTCCTTGAAGTTTTATCAGCATCTGAGATAGATTAGAGGTGGATGTCTGTGGCATCACTTGTGATTCATCGACAATAACTCTCCAGAATTTGACATGAACCAGAGAAGTTGTCAAATAA</canonical_amplicon>
		<polymorphic_amplicon>GTACTGAGGATGCACATAATTAGAGAAAAAATCCGTGTTGTTGTAGGGGAACAAATCCAGAAATGTGAAGAGGGGATTCATGTCGGAAATAGTTCTGACAAGAGGAGTTCCCGTAACACACCACCAATTAATTCCTTGAAGTTTTATCAGCATCTGAGATAGATTARAGGTGGATGTCTGTGGCATCACTTGTGATTCATCGACAATAACTCTCCAGAATTTGACATGAACCAGAGAAGTTGTCAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30774</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>468621</contig_pos>
        <strand>+</strand>
        <context>ATGATAGAAA[C/G]AATGCTTTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAAGGGCGGAGTTTAACATCACAAAAGCAATATGATAGAATGATAGAAA</left_flank>
        <right_flank>AATGCTTTAAAGCACTCAATCATATTAAAAACGGGGTGAGTCACCCGGAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGACAATATGCACTCGTTTTTTGAACATCATAGGCAATACTGTGGGACTGTCGAGAATGGATTCAAAAACTCTGTCATGCTGTAGATAGAAATCGATGCGAATATGTTTTGAAGGAAGAATTTCATAGAGCAGGAAGACGCCAGCGTTAGCGAGTAACCTGAAAACCAGGATTTAAAAAATGACAATAACTTCCAGATATCGTACTTTGGCTCTTTGCTGAATCTCTCAAGCAGACAAATGAGAGGATGCTCAGACTGTGGTTCGGTCTTCTGGATGCATCGACCAGGGATGTAGGAGTGCATGCCCTTCCAAGGTGATTTTTGCTTGCGTTCCGTCTCCACATAGAATGAAAACTGAAAATCTTAGACCATATTAACATCCTAGGCATTGATTGAGCTTGGACACGCACCCAGATCGTACAATTGAGTGGGCGTTTATACCAAGTCAAAAGGGCGGAGTTTAACATCACAAAAGCAATATGATAGAATGATAGAAAGAATGCTTTAAAGCACTCAATCATATTAAAAACGGGGTGAGTCACCCGGACAGAGAGTGCTATCCTTAGATCCAGCACAGACTTTCCATTTGTCCTCAGAACCTTCTAATACTCACATAGTCTTCGGAAACGCTTCTACAAAGGAATAATGTACTTCTCGGCAAGTTCTCCTCGGTGAACTGAAAATCGGAAGTGATCGAGTTGAGTAAGACGTTTGGGGCAGATGTGGAGGCACCAATAGTTGAAACATTTTCTATTCGAATCACTCGACTTCTCGGCAACTCATCCCAATCCTGAAAAGTAATTTTAAAAATATAAGAATTAAATTGATTTCGGATTTTATTATTTTAGCTTGGTCCCTGAAGATCAAGCCTTTCCGGAGAGAATGTTCCTAATTTTCTCGTTCTGTTTCATTCTTTCAAAACATGGCCCACCTGTTCTTCCGATTTTTTCTTGTGCTTCGACATGGTATCACCTGAAAATAAACACAATTTGTTGAAC</canonical>
            <polymorphic>CATGACAATATGCACTCGTTTTTTGAACATCATAGGCAATACTGTGGGACTGTCGAGAATGGATTCAAAAACTCTGTCATGCTGTAGATAGAAATCGATGCGAATATGTTTTGAAGGAAGAATTTCATAGAGCAGGAAGACGCCAGCGTTAGCGAGTAACCTGAAAACCAGGATTTAAAAAATGACAATAACTTCCAGATATCGTACTTTGGCTCTTTGCTGAATCTCTCAAGCAGACAAATGAGAGGATGCTCAGACTGTGGTTCGGTCTTCTGGATGCATCGACCAGGGATGTAGGAGTGCATGCCCTTCCAAGGTGATTTTTGCTTGCGTTCCGTCTCCACATAGAATGAAAACTGAAAATCTTAGACCATATTAACATCCTAGGCATTGATTGAGCTTGGACACGCACCCAGATCGTACAATTGAGTGGGCGTTTATACCAAGTCAAAAGGGCGGAGTTTAACATCACAAAAGCAATATGATAGAATGATAGAAASAATGCTTTAAAGCACTCAATCATATTAAAAACGGGGTGAGTCACCCGGACAGAGAGTGCTATCCTTAGATCCAGCACAGACTTTCCATTTGTCCTCAGAACCTTCTAATACTCACATAGTCTTCGGAAACGCTTCTACAAAGGAATAATGTACTTCTCGGCAAGTTCTCCTCGGTGAACTGAAAATCGGAAGTGATCGAGTTGAGTAAGACGTTTGGGGCAGATGTGGAGGCACCAATAGTTGAAACATTTTCTATTCGAATCACTCGACTTCTCGGCAACTCATCCCAATCCTGAAAAGTAATTTTAAAAATATAAGAATTAAATTGATTTCGGATTTTATTATTTTAGCTTGGTCCCTGAAGATCAAGCCTTTCCGGAGAGAATGTTCCTAATTTTCTCGTTCTGTTTCATTCTTTCAAAACATGGCCCACCTGTTCTTCCGATTTTTTCTTGTGCTTCGACATGGTATCACCTGAAAATAAACACAATTTGTTGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTCCACATAGAATGAAAACTG</pcr_primer_p1>
		<pcr_primer_p2>GAAAGTCTGTGCTGGATCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCTCCACATAGAATGAAAACTGAAAATCTTAGACCATATTAACATCCTAGGCATTGATTGAGCTTGGACACGCACCCAGATCGTACAATTGAGTGGGCGTTTATACCAAGTCAAAAGGGCGGAGTTTAACATCACAAAAGCAATATGATAGAATGATAGAAAGAATGCTTTAAAGCACTCAATCATATTAAAAACGGGGTGAGTCACCCGGACAGAGAGTGCTATCCTTAGATCCAGCACAGACTTTC</canonical_amplicon>
		<polymorphic_amplicon>GTCTCCACATAGAATGAAAACTGAAAATCTTAGACCATATTAACATCCTAGGCATTGATTGAGCTTGGACACGCACCCAGATCGTACAATTGAGTGGGCGTTTATACCAAGTCAAAAGGGCGGAGTTTAACATCACAAAAGCAATATGATAGAATGATAGAAASAATGCTTTAAAGCACTCAATCATATTAAAAACGGGGTGAGTCACCCGGACAGAGAGTGCTATCCTTAGATCCAGCACAGACTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30775</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>485665</contig_pos>
        <strand>+</strand>
        <context>TCTAACAAAA[A/C]AAATTGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATGAAAAATTCTGCCATTGACCCATTTTCAGATCGAATTTCTAACAAAA</left_flank>
        <right_flank>AAATTGAAAAAAACGTCAAAACCCTACCAGGAGAGGTATGGATATCAATT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACCGGATGTTTTCAGATAGATTTCGCGGGAATAGTTAGTAAGTCACGAAGATACGGAAGTCAGGAGAGAAAACAGATGATGTGAAATGGGCGGAGCAAACACTGTAGTTAAGAGGGTTGCTGGCAGAACTTTGAGATACAATCGGAAATGGTCAAGAAACGAAGACATTTTTTATATTAGTCAAAGTCACGGAACCGTTATCAAACGACATCTCTCGTTGGAGAGAATTTTTGCAAAGTGATCACGTTGCAGGTATAATTTTTTGATTTCTAGACGAAAACTATTCAAGCATTCAGAAAATTTGAAATCTTGTAGATGTGAATTCAGACGTGGTATATTCAAAACCTCAAAAGTACAATTATTCTAACTCAAGAAGACGTTAAGACTAAGAAAAGAGAACACAGGCAAAGTTGAGGAACATTTTGGAAATACAATAACCAAAACCAAATATGAAAAATTCTGCCATTGACCCATTTTCAGATCGAATTTCTAACAAAAAAAATTGAAAAAAACGTCAAAACCCTACCAGGAGAGGTATGGATATCAATTTTGGCTCCGGGTTTCTTGAATATAAAAACGAATTGCGCTTACAGATTTTCGATATCTCTTACCGGTTTCTCAGAACCGTGAAAATAGAAGCACTATATTTGATGATAATTCGAATGAATAAAACTGTTAAAAACAGGAAACGGTAGGGAACGAACACCAGATGTGCTTGAAATTGGAAAAACAGGTAGTAATGTAATCATCTATATTTTTACTAGACTATAGATGGAAAACGGAAATGTCTAACCATAATCTTGAATAATGTAAACAGTTCGTTGGAAACTACAGTACAAACGACAGTAGAAATTCGGGAATGATTTTATACTGTCTTGATAATAAAGTTCCTTGATAGACAGAAAATGACTTTTTGATCTAACACCAAATTGGCTCTATAGAAAACGAATACCGGAACAAATGTTCTGTTTTTTAAAAAGGAATCCTGTGTGACGTTAA</canonical>
            <polymorphic>GACCGGATGTTTTCAGATAGATTTCGCGGGAATAGTTAGTAAGTCACGAAGATACGGAAGTCAGGAGAGAAAACAGATGATGTGAAATGGGCGGAGCAAACACTGTAGTTAAGAGGGTTGCTGGCAGAACTTTGAGATACAATCGGAAATGGTCAAGAAACGAAGACATTTTTTATATTAGTCAAAGTCACGGAACCGTTATCAAACGACATCTCTCGTTGGAGAGAATTTTTGCAAAGTGATCACGTTGCAGGTATAATTTTTTGATTTCTAGACGAAAACTATTCAAGCATTCAGAAAATTTGAAATCTTGTAGATGTGAATTCAGACGTGGTATATTCAAAACCTCAAAAGTACAATTATTCTAACTCAAGAAGACGTTAAGACTAAGAAAAGAGAACACAGGCAAAGTTGAGGAACATTTTGGAAATACAATAACCAAAACCAAATATGAAAAATTCTGCCATTGACCCATTTTCAGATCGAATTTCTAACAAAAMAAATTGAAAAAAACGTCAAAACCCTACCAGGAGAGGTATGGATATCAATTTTGGCTCCGGGTTTCTTGAATATAAAAACGAATTGCGCTTACAGATTTTCGATATCTCTTACCGGTTTCTCAGAACCGTGAAAATAGAAGCACTATATTTGATGATAATTCGAATGAATAAAACTGTTAAAAACAGGAAACGGTAGGGAACGAACACCAGATGTGCTTGAAATTGGAAAAACAGGTAGTAATGTAATCATCTATATTTTTACTAGACTATAGATGGAAAACGGAAATGTCTAACCATAATCTTGAATAATGTAAACAGTTCGTTGGAAACTACAGTACAAACGACAGTAGAAATTCGGGAATGATTTTATACTGTCTTGATAATAAAGTTCCTTGATAGACAGAAAATGACTTTTTGATCTAACACCAAATTGGCTCTATAGAAAACGAATACCGGAACAAATGTTCTGTTTTTTAAAAAGGAATCCTGTGTGACGTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACCAAATATGAAAAATTCTG</pcr_primer_p1>
		<pcr_primer_p2>CGTTTCCTGTTTTTAACAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAAACCAAATATGAAAAATTCTGCCATTGACCCATTTTCAGATCGAATTTCTAACAAAAAAAATTGAAAAAAACGTCAAAACCCTACCAGGAGAGGTATGGATATCAATTTTGGCTCCGGGTTTCTTGAATATAAAAACGAATTGCGCTTACAGATTTTCGATATCTCTTACCGGTTTCTCAGAACCGTGAAAATAGAAGCACTATATTTGATGATAATTCGAATGAATAAAACTGTTAAAAACAGGAAACG</canonical_amplicon>
		<polymorphic_amplicon>AAAACCAAATATGAAAAATTCTGCCATTGACCCATTTTCAGATCGAATTTCTAACAAAAMAAATTGAAAAAAACGTCAAAACCCTACCAGGAGAGGTATGGATATCAATTTTGGCTCCGGGTTTCTTGAATATAAAAACGAATTGCGCTTACAGATTTTCGATATCTCTTACCGGTTTCTCAGAACCGTGAAAATAGAAGCACTATATTTGATGATAATTCGAATGAATAAAACTGTTAAAAACAGGAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30776</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>486182</contig_pos>
        <strand>+</strand>
        <context>TGAATTCTTT[C/T]ATTTGTAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGTTTTTTAAAAAGGAATCCTGTGTGACGTTAATTTCAATGAATTCTTT</left_flank>
        <right_flank>ATTTGTAAAATAGTGATGATCTTATGAACTGTTTAGTCATAGTGGCAATG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACCCTACCAGGAGAGGTATGGATATCAATTTTGGCTCCGGGTTTCTTGAATATAAAAACGAATTGCGCTTACAGATTTTCGATATCTCTTACCGGTTTCTCAGAACCGTGAAAATAGAAGCACTATATTTGATGATAATTCGAATGAATAAAACTGTTAAAAACAGGAAACGGTAGGGAACGAACACCAGATGTGCTTGAAATTGGAAAAACAGGTAGTAATGTAATCATCTATATTTTTACTAGACTATAGATGGAAAACGGAAATGTCTAACCATAATCTTGAATAATGTAAACAGTTCGTTGGAAACTACAGTACAAACGACAGTAGAAATTCGGGAATGATTTTATACTGTCTTGATAATAAAGTTCCTTGATAGACAGAAAATGACTTTTTGATCTAACACCAAATTGGCTCTATAGAAAACGAATACCGGAACAAATGTTCTGTTTTTTAAAAAGGAATCCTGTGTGACGTTAATTTCAATGAATTCTTTCATTTGTAAAATAGTGATGATCTTATGAACTGTTTAGTCATAGTGGCAATGAAACTGAAAAATGTCGAAAAATTAATGTTAAGAGAAAAAGCGAGGGGGTTCTTAAGCAGGTGAAATTCGAAAAAAAAACAAATGGTCATTACTTGGAACAAGCGGTAAGGATCTAAATGAAAAATAATTTGAAAACTTTTTTGTTGTGGTTAAAAACGGTTTTGAAGTTGAAAAAACCGGTGGGTTCAATGTTTTGAGCAATGAGATGACTTTACAAAAACAACAGAAAACAACATTATCTAGCATCCCACAAATATTCCCTTTTTATATAATGCTGATCAGCATCGATGACGTTTTCGGTTTTCGTAACTTTGGCGTGGGTGACAAATTTTCCAATTCGGTACACAATATGTTGGAAGTAGGAGATATGAAGAGTCAGGAGATACTACATATGAAGCTATGTTGAGGTGTTATTAGTTTCGAGATTTTTCGAGAAGAGCATGGAATATA</canonical>
            <polymorphic>AAAACCCTACCAGGAGAGGTATGGATATCAATTTTGGCTCCGGGTTTCTTGAATATAAAAACGAATTGCGCTTACAGATTTTCGATATCTCTTACCGGTTTCTCAGAACCGTGAAAATAGAAGCACTATATTTGATGATAATTCGAATGAATAAAACTGTTAAAAACAGGAAACGGTAGGGAACGAACACCAGATGTGCTTGAAATTGGAAAAACAGGTAGTAATGTAATCATCTATATTTTTACTAGACTATAGATGGAAAACGGAAATGTCTAACCATAATCTTGAATAATGTAAACAGTTCGTTGGAAACTACAGTACAAACGACAGTAGAAATTCGGGAATGATTTTATACTGTCTTGATAATAAAGTTCCTTGATAGACAGAAAATGACTTTTTGATCTAACACCAAATTGGCTCTATAGAAAACGAATACCGGAACAAATGTTCTGTTTTTTAAAAAGGAATCCTGTGTGACGTTAATTTCAATGAATTCTTTYATTTGTAAAATAGTGATGATCTTATGAACTGTTTAGTCATAGTGGCAATGAAACTGAAAAATGTCGAAAAATTAATGTTAAGAGAAAAAGCGAGGGGGTTCTTAAGCAGGTGAAATTCGAAAAAAAAACAAATGGTCATTACTTGGAACAAGCGGTAAGGATCTAAATGAAAAATAATTTGAAAACTTTTTTGTTGTGGTTAAAAACGGTTTTGAAGTTGAAAAAACCGGTGGGTTCAATGTTTTGAGCAATGAGATGACTTTACAAAAACAACAGAAAACAACATTATCTAGCATCCCACAAATATTCCCTTTTTATATAATGCTGATCAGCATCGATGACGTTTTCGGTTTTCGTAACTTTGGCGTGGGTGACAAATTTTCCAATTCGGTACACAATATGTTGGAAGTAGGAGATATGAAGAGTCAGGAGATACTACATATGAAGCTATGTTGAGGTGTTATTAGTTTCGAGATTTTTCGAGAAGAGCATGGAATATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGAAACTACAGTACAAACGAC</pcr_primer_p1>
		<pcr_primer_p2>AGTTTCATTGCCACTATGACTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGGAAACTACAGTACAAACGACAGTAGAAATTCGGGAATGATTTTATACTGTCTTGATAATAAAGTTCCTTGATAGACAGAAAATGACTTTTTGATCTAACACCAAATTGGCTCTATAGAAAACGAATACCGGAACAAATGTTCTGTTTTTTAAAAAGGAATCCTGTGTGACGTTAATTTCAATGAATTCTTTCATTTGTAAAATAGTGATGATCTTATGAACTGTTTAGTCATAGTGGCAATGAAACT</canonical_amplicon>
		<polymorphic_amplicon>TTGGAAACTACAGTACAAACGACAGTAGAAATTCGGGAATGATTTTATACTGTCTTGATAATAAAGTTCCTTGATAGACAGAAAATGACTTTTTGATCTAACACCAAATTGGCTCTATAGAAAACGAATACCGGAACAAATGTTCTGTTTTTTAAAAAGGAATCCTGTGTGACGTTAATTTCAATGAATTCTTTYATTTGTAAAATAGTGATGATCTTATGAACTGTTTAGTCATAGTGGCAATGAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30777</snp_id>
        <super_contig>c005600388.Contig4</super_contig>
        <contig_pos>486443</contig_pos>
        <strand>+</strand>
        <context>ATGAGATGAC[A/T]TTACAAAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGAAGTTGAAAAAACCGGTGGGTTCAATGTTTTGAGCAATGAGATGAC</left_flank>
        <right_flank>TTACAAAAACAACAGAAAACAACATTATCTAGCATCCCACAAATATTCCC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGGAAATGTCTAACCATAATCTTGAATAATGTAAACAGTTCGTTGGAAACTACAGTACAAACGACAGTAGAAATTCGGGAATGATTTTATACTGTCTTGATAATAAAGTTCCTTGATAGACAGAAAATGACTTTTTGATCTAACACCAAATTGGCTCTATAGAAAACGAATACCGGAACAAATGTTCTGTTTTTTAAAAAGGAATCCTGTGTGACGTTAATTTCAATGAATTCTTTCATTTGTAAAATAGTGATGATCTTATGAACTGTTTAGTCATAGTGGCAATGAAACTGAAAAATGTCGAAAAATTAATGTTAAGAGAAAAAGCGAGGGGGTTCTTAAGCAGGTGAAATTCGAAAAAAAAACAAATGGTCATTACTTGGAACAAGCGGTAAGGATCTAAATGAAAAATAATTTGAAAACTTTTTTGTTGTGGTTAAAAACGGTTTTGAAGTTGAAAAAACCGGTGGGTTCAATGTTTTGAGCAATGAGATGACTTTACAAAAACAACAGAAAACAACATTATCTAGCATCCCACAAATATTCCCTTTTTATATAATGCTGATCAGCATCGATGACGTTTTCGGTTTTCGTAACTTTGGCGTGGGTGACAAATTTTCCAATTCGGTACACAATATGTTGGAAGTAGGAGATATGAAGAGTCAGGAGATACTACATATGAAGCTATGTTGAGGTGTTATTAGTTTCGAGATTTTTCGAGAAGAGCATGGAATATATCAGAAATAATGGACTGAAATAGAAAGCGGGTCACTGCTCTAAATTCAGAGAGCCCTCTAAACTGATTTACGGTAAACATGTCTGATGTAAAACTTTGTGTTTAGCGTAAAGTTTTTTAATAAGAACGGATATGCCTTTAAACCTGTTTTACTTTAGAAGAGTCCTTCTATAGAAAGACCCCTCTAAAAGAAAGGTCCTCCGAGATGGGCTTATTAATATAGAAACGTCCCTGTAGTTGAAGGACCCCACCCAATTCAAAA</canonical>
            <polymorphic>AACGGAAATGTCTAACCATAATCTTGAATAATGTAAACAGTTCGTTGGAAACTACAGTACAAACGACAGTAGAAATTCGGGAATGATTTTATACTGTCTTGATAATAAAGTTCCTTGATAGACAGAAAATGACTTTTTGATCTAACACCAAATTGGCTCTATAGAAAACGAATACCGGAACAAATGTTCTGTTTTTTAAAAAGGAATCCTGTGTGACGTTAATTTCAATGAATTCTTTCATTTGTAAAATAGTGATGATCTTATGAACTGTTTAGTCATAGTGGCAATGAAACTGAAAAATGTCGAAAAATTAATGTTAAGAGAAAAAGCGAGGGGGTTCTTAAGCAGGTGAAATTCGAAAAAAAAACAAATGGTCATTACTTGGAACAAGCGGTAAGGATCTAAATGAAAAATAATTTGAAAACTTTTTTGTTGTGGTTAAAAACGGTTTTGAAGTTGAAAAAACCGGTGGGTTCAATGTTTTGAGCAATGAGATGACWTTACAAAAACAACAGAAAACAACATTATCTAGCATCCCACAAATATTCCCTTTTTATATAATGCTGATCAGCATCGATGACGTTTTCGGTTTTCGTAACTTTGGCGTGGGTGACAAATTTTCCAATTCGGTACACAATATGTTGGAAGTAGGAGATATGAAGAGTCAGGAGATACTACATATGAAGCTATGTTGAGGTGTTATTAGTTTCGAGATTTTTCGAGAAGAGCATGGAATATATCAGAAATAATGGACTGAAATAGAAAGCGGGTCACTGCTCTAAATTCAGAGAGCCCTCTAAACTGATTTACGGTAAACATGTCTGATGTAAAACTTTGTGTTTAGCGTAAAGTTTTTTAATAAGAACGGATATGCCTTTAAACCTGTTTTACTTTAGAAGAGTCCTTCTATAGAAAGACCCCTCTAAAAGAAAGGTCCTCCGAGATGGGCTTATTAATATAGAAACGTCCCTGTAGTTGAAGGACCCCACCCAATTCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTAAGGATCTAAATGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGTGTACCGAATTGGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CGGTAAGGATCTAAATGAAAAATAATTTGAAAACTTTTTTGTTGTGGTTAAAAACGGTTTTGAAGTTGAAAAAACCGGTGGGTTCAATGTTTTGAGCAATGAGATGACTTTACAAAAACAACAGAAAACAACATTATCTAGCATCCCACAAATATTCCCTTTTTATATAATGCTGATCAGCATCGATGACGTTTTCGGTTTTCGTAACTTTGGCGTGGGTGACAAATTTTCCAATTCGGTACACA</canonical_amplicon>
		<polymorphic_amplicon>CGGTAAGGATCTAAATGAAAAATAATTTGAAAACTTTTTTGTTGTGGTTAAAAACGGTTTTGAAGTTGAAAAAACCGGTGGGTTCAATGTTTTGAGCAATGAGATGACWTTACAAAAACAACAGAAAACAACATTATCTAGCATCCCACAAATATTCCCTTTTTATATAATGCTGATCAGCATCGATGACGTTTTCGGTTTTCGTAACTTTGGCGTGGGTGACAAATTTTCCAATTCGGTACACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30778</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>84092</contig_pos>
        <strand></strand>
        <context>GGAGAAGTCA[G/A]AGCTGGCAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AACAAGACCAATTTGGATTGATCAGAAAAGGAACCAGGTTGGAGAAGTCA</left_flank>
        <right_flank>AGCTGGCAGAAGACGCAAAGTATCCAATTATTCTGGTACGCGACCACAAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCTCAAGACTACTATTGCGAACACAGACGCTCAATTAAGCCGGAGTCACAGAGCGGCAGAATCGCAAATGGAACGGAACGGAAAGAGGGGTAATCAATCAAAAAACAGAGAATCCCAATAAAATGAATGGCTTTTGTGAACCGAATTGTAATACCTATGGGAAATTTGGAAGACGACAGATTTACGATCTTCAGAAACTAGGGTTCTGCCGTAAATAACTACAATGGAAATGACTCGTAGAGATTAGTTGGGAAACAATCGAATTAATGTGGATAAAAATCTATGAAGATATGTCCTGACAGATTATTTCAGTACTTCATTTTTGAGATAAATTAATTTTCCGTCTCAGTTTTCAACACAAAGTTGTCGATAAGCAACAGTAATCTAGAAGAAAAGGACCGAAAATTTTAGGTTACGGTAGTTTTCGTTACGAGGACCGTTGGCCCGAAACAAGACCAATTTGGATTGATCAGAAAAGGAACCAGGTTGGAGAAGTCAGAGCTGGCAGAAGACGCAAAGTATCCAATTATTCTGGTACGCGACCACAAGTTGACAGAGATGATCGTGCGGCAAACCCATGTGTACAACAGACACATTGGAACGGAACATTTGTTGGCAGAATGCAGAAGGCAATATTGGATTCCTCAAGGAAGACAGCTAGCCAGAAAGATTGTACATTCTTGTGTCACTTGCAGAAAACTGAGAGGTAGACCATTCAAATACCCCGACATCCCACCAATACCATCGACCAGAGTAAGAAGGTCAGGGCCATTCCAAAACGTGGGACTCGATGGGTTCGGTCCACTAATGTATAAGGGCTTGACTGGAGAAAGGAAATGTTGGGTACTAATTTGCACATGTTTGATAACAAGGAACGTACATTTGGAACTTATCTCCGACAATGGAACTAGCGAATTTATATTAGCCATGAGACGATATTTTGCCAGAAGAGGGACCCCTAGAACAGTAGTGTTGGATAATGCCAAGAGTTTTGTTCTA</canonical>
            <polymorphic>TGCTCAAGACTACTATTGCGAACACAGACGCTCAATTAAGCCGGAGTCACAGAGCGGCAGAATCGCAAATGGAACGGAACGGAAAGAGGGGTAATCAATCAAAAAACAGAGAATCCCAATAAAATGAATGGCTTTTGTGAACCGAATTGTAATACCTATGGGAAATTTGGAAGACGACAGATTTACGATCTTCAGAAACTAGGGTTCTGCCGTAAATAACTACAATGGAAATGACTCGTAGAGATTAGTTGGGAAACAATCGAATTAATGTGGATAAAAATCTATGAAGATATGTCCTGACAGATTATTTCAGTACTTCATTTTTGAGATAAATTAATTTTCCGTCTCAGTTTTCAACACAAAGTTGTCGATAAGCAACAGTAATCTAGAAGAAAAGGACCGAAAATTTTAGGTTACGGTAGTTTTCGTTACGAGGACCGTTGGCCCGAAACAAGACCAATTTGGATTGATCAGAAAAGGAACCAGGTTGGAGAAGTCARAGCTGGCAGAAGACGCAAAGTATCCAATTATTCTGGTACGCGACCACAAGTTGACAGAGATGATCGTGCGGCAAACCCATGTGTACAACAGACACATTGGAACGGAACATTTGTTGGCAGAATGCAGAAGGCAATATTGGATTCCTCAAGGAAGACAGCTAGCCAGAAAGATTGTACATTCTTGTGTCACTTGCAGAAAACTGAGAGGTAGACCATTCAAATACCCCGACATCCCACCAATACCATCGACCAGAGTAAGAAGGTCAGGGCCATTCCAAAACGTGGGACTCGATGGGTTCGGTCCACTAATGTATAAGGGCTTGACTGGAGAAAGGAAATGTTGGGTACTAATTTGCACATGTTTGATAACAAGGAACGTACATTTGGAACTTATCTCCGACAATGGAACTAGCGAATTTATATTAGCCATGAGACGATATTTTGCCAGAAGAGGGACCCCTAGAACAGTAGTGTTGGATAATGCCAAGAGTTTTGTTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>399 279 194 102 26</canonical_bands>
                <polymorphic_bands>425 279 194 102</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAGTACTTCATTTTTGAGATAAA</pcr_primer_p1>
		<pcr_primer_p2>CATCTCTGTCAACTTGTGGTC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTCAGTACTTCATTTTTGAGATAAATTAATTTTCCGTCTCAGTTTTCAACACAAAGTTGTCGATAAGCAACAGTAATCTAGAAGAAAAGGACCGAAAATTTTAGGTTACGGTAGTTTTCGTTACGAGGACCGTTGGCCCGAAACAAGACCAATTTGGATTGATCAGAAAAGGAACCAGGTTGGAGAAGTCAGAGCTGGCAGAAGACGCAAAGTATCCAATTATTCTGGTACGCGACCACAAGTTGACAGAGATG</canonical_amplicon>
		<polymorphic_amplicon>TTCAGTACTTCATTTTTGAGATAAATTAATTTTCCGTCTCAGTTTTCAACACAAAGTTGTCGATAAGCAACAGTAATCTAGAAGAAAAGGACCGAAAATTTTAGGTTACGGTAGTTTTCGTTACGAGGACCGTTGGCCCGAAACAAGACCAATTTGGATTGATCAGAAAAGGAACCAGGTTGGAGAAGTCARAGCTGGCAGAAGACGCAAAGTATCCAATTATTCTGGTACGCGACCACAAGTTGACAGAGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30779</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>85333</contig_pos>
        <strand></strand>
        <context>AGGAAGAAAA[C/T]ACCACTGAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAGAGGAAGAATCTACCGCTTTGGAAAAGGCAGAGCACAAGGAAGAAAA</left_flank>
        <right_flank>ACCACTGAACCAGAACCACTTGATGATCTTCAGAAGATTTAAAGTGGAAC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCCAGACCTATCAGCCACAATCCAGAAGGTCCCAACGAGGGAGAAGTGATACGACCAGTTGATTTCATCAATCCAGAAGTGAAGCTGGAAATCTTACATGATCCGGGTAACCAGGAAATAGAAGAAAAGATGGGAACAACAGAGAAGGAGACAAGGTTACATTTGTCTAATCTGAACAAACACATGAACCATCTATGGCTGCAATGGGAGACAATGTATCTAACCCAATTGAAAGAAGCAAAAGCAAAGAAAAAACATTACACGAACACCATACCGAAGGTTGGACAAGTAGTGCTAATAGAAGAAAGACTAAGATGTAGACACAAATAGCAGATGGCTAAAATCACTGAGATTCATCCGAATGCTCAAGGCCAAATCAGAACTGTCACTATCAAATATGGAGGCATGGAAGTCTTGAGATCCGTGAACCAATTGATTCCATTGGAATTAGAGGAAGAATCTACCGCTTTGGAAAAGGCAGAGCACAAGGAAGAAAACACCACTGAACCAGAACCACTTGATGATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATAAGAAAGAGACTAGACAGAAAGGCCAAACAAGGAGTCACGTATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGATTGACTATCACTTATTCACGACTTTTCTCTTATTAAATACATCCCATATCATTATCCTTGTTTTCTATGTTTGAGTCAGCCGCATTCGTCTTCTTGCCTACACCACCCACGACGCCATATTTGAATCACCGCCAATTTGAGGACTACTGTAACCTGCACATCTAACTCTCGACACGACCAAGGACGCGCCCGGTTTGGGGATCAATTTCTTCTGCA</canonical>
            <polymorphic>ATTCCAGACCTATCAGCCACAATCCAGAAGGTCCCAACGAGGGAGAAGTGATACGACCAGTTGATTTCATCAATCCAGAAGTGAAGCTGGAAATCTTACATGATCCGGGTAACCAGGAAATAGAAGAAAAGATGGGAACAACAGAGAAGGAGACAAGGTTACATTTGTCTAATCTGAACAAACACATGAACCATCTATGGCTGCAATGGGAGACAATGTATCTAACCCAATTGAAAGAAGCAAAAGCAAAGAAAAAACATTACACGAACACCATACCGAAGGTTGGACAAGTAGTGCTAATAGAAGAAAGACTAAGATGTAGACACAAATAGCAGATGGCTAAAATCACTGAGATTCATCCGAATGCTCAAGGCCAAATCAGAACTGTCACTATCAAATATGGAGGCATGGAAGTCTTGAGATCCGTGAACCAATTGATTCCATTGGAATTAGAGGAAGAATCTACCGCTTTGGAAAAGGCAGAGCACAAGGAAGAAAAYACCACTGAACCAGAACCACTTGATGATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATAAGAAAGAGACTAGACAGAAAGGCCAAACAAGGAGTCACGTATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGATTGACTATCACTTATTCACGACTTTTCTCTTATTAAATACATCCCATATCATTATCCTTGTTTTCTATGTTTGAGTCAGCCGCATTCGTCTTCTTGCCTACACCACCCACGACGCCATATTTGAATCACCGCCAATTTGAGGACTACTGTAACCTGCACATCTAACTCTCGACACGACCAAGGACGCGCCCGGTTTGGGGATCAATTTCTTCTGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>101 84 80 60 59 53 48 42 42 38 33 31 30 29 28 26 23 19 19 16 15 15 14 14 14 13 11 9 8 6 5 5 4 3 3</canonical_bands>
                <polymorphic_bands>101 84 80 60 59 53 48 42 42 38 33 31 30 29 28 26 23 19 19 17 16 15 15 14 14 13 11 9 8 6 5 5 4 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCTAAAATCACTGAGATTCAT</pcr_primer_p1>
		<pcr_primer_p2>TATTATGTCCTGAATGTGATCCT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GGCTAAAATCACTGAGATTCATCCGAATGCTCAAGGCCAAATCAGAACTGTCACTATCAAATATGGAGGCATGGAAGTCTTGAGATCCGTGAACCAATTGATTCCATTGGAATTAGAGGAAGAATCTACCGCTTTGGAAAAGGCAGAGCACAAGGAAGAAAACACCACTGAACCAGAACCACTTGATGATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATA</canonical_amplicon>
		<polymorphic_amplicon>GGCTAAAATCACTGAGATTCATCCGAATGCTCAAGGCCAAATCAGAACTGTCACTATCAAATATGGAGGCATGGAAGTCTTGAGATCCGTGAACCAATTGATTCCATTGGAATTAGAGGAAGAATCTACCGCTTTGGAAAAGGCAGAGCACAAGGAAGAAAAYACCACTGAACCAGAACCACTTGATGATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30780</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>85358</contig_pos>
        <strand></strand>
        <context>ACCACTTGAT[G/C]ATCTTCAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AAAAGGCAGAGCACAAGGAAGAAAACACCACTGAACCAGAACCACTTGAT</left_flank>
        <right_flank>ATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGAC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAGGTCCCAACGAGGGAGAAGTGATACGACCAGTTGATTTCATCAATCCAGAAGTGAAGCTGGAAATCTTACATGATCCGGGTAACCAGGAAATAGAAGAAAAGATGGGAACAACAGAGAAGGAGACAAGGTTACATTTGTCTAATCTGAACAAACACATGAACCATCTATGGCTGCAATGGGAGACAATGTATCTAACCCAATTGAAAGAAGCAAAAGCAAAGAAAAAACATTACACGAACACCATACCGAAGGTTGGACAAGTAGTGCTAATAGAAGAAAGACTAAGATGTAGACACAAATAGCAGATGGCTAAAATCACTGAGATTCATCCGAATGCTCAAGGCCAAATCAGAACTGTCACTATCAAATATGGAGGCATGGAAGTCTTGAGATCCGTGAACCAATTGATTCCATTGGAATTAGAGGAAGAATCTACCGCTTTGGAAAAGGCAGAGCACAAGGAAGAAAACACCACTGAACCAGAACCACTTGATGATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATAAGAAAGAGACTAGACAGAAAGGCCAAACAAGGAGTCACGTATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGATTGACTATCACTTATTCACGACTTTTCTCTTATTAAATACATCCCATATCATTATCCTTGTTTTCTATGTTTGAGTCAGCCGCATTCGTCTTCTTGCCTACACCACCCACGACGCCATATTTGAATCACCGCCAATTTGAGGACTACTGTAACCTGCACATCTAACTCTCGACACGACCAAGGACGCGCCCGGTTTGGGGATCAATTTCTTCTGCAAAATTAGGCTTCTTGTTGTTTCCTT</canonical>
            <polymorphic>AGAAGGTCCCAACGAGGGAGAAGTGATACGACCAGTTGATTTCATCAATCCAGAAGTGAAGCTGGAAATCTTACATGATCCGGGTAACCAGGAAATAGAAGAAAAGATGGGAACAACAGAGAAGGAGACAAGGTTACATTTGTCTAATCTGAACAAACACATGAACCATCTATGGCTGCAATGGGAGACAATGTATCTAACCCAATTGAAAGAAGCAAAAGCAAAGAAAAAACATTACACGAACACCATACCGAAGGTTGGACAAGTAGTGCTAATAGAAGAAAGACTAAGATGTAGACACAAATAGCAGATGGCTAAAATCACTGAGATTCATCCGAATGCTCAAGGCCAAATCAGAACTGTCACTATCAAATATGGAGGCATGGAAGTCTTGAGATCCGTGAACCAATTGATTCCATTGGAATTAGAGGAAGAATCTACCGCTTTGGAAAAGGCAGAGCACAAGGAAGAAAACACCACTGAACCAGAACCACTTGATSATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATAAGAAAGAGACTAGACAGAAAGGCCAAACAAGGAGTCACGTATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGATTGACTATCACTTATTCACGACTTTTCTCTTATTAAATACATCCCATATCATTATCCTTGTTTTCTATGTTTGAGTCAGCCGCATTCGTCTTCTTGCCTACACCACCCACGACGCCATATTTGAATCACCGCCAATTTGAGGACTACTGTAACCTGCACATCTAACTCTCGACACGACCAAGGACGCGCCCGGTTTGGGGATCAATTTCTTCTGCAAAATTAGGCTTCTTGTTGTTTCCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>423 319 104 76 42 36</canonical_bands>
                <polymorphic_bands>423 319 140 76 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCTAAAATCACTGAGATTCAT</pcr_primer_p1>
		<pcr_primer_p2>TATTATGTCCTGAATGTGATCCT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GGCTAAAATCACTGAGATTCATCCGAATGCTCAAGGCCAAATCAGAACTGTCACTATCAAATATGGAGGCATGGAAGTCTTGAGATCCGTGAACCAATTGATTCCATTGGAATTAGAGGAAGAATCTACCGCTTTGGAAAAGGCAGAGCACAAGGAAGAAAACACCACTGAACCAGAACCACTTGATGATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATA</canonical_amplicon>
		<polymorphic_amplicon>GGCTAAAATCACTGAGATTCATCCGAATGCTCAAGGCCAAATCAGAACTGTCACTATCAAATATGGAGGCATGGAAGTCTTGAGATCCGTGAACCAATTGATTCCATTGGAATTAGAGGAAGAATCTACCGCTTTGGAAAAGGCAGAGCACAAGGAAGAAAACACCACTGAACCAGAACCACTTGATSATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30781</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>85373</contig_pos>
        <strand></strand>
        <context>TCAGAAGATT[T/A]AAAGTGGAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGGAAGAAAACACCACTGAACCAGAACCACTTGATGATCTTCAGAAGATT</left_flank>
        <right_flank>AAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATAAGAAAGAGA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGAGAAGTGATACGACCAGTTGATTTCATCAATCCAGAAGTGAAGCTGGAAATCTTACATGATCCGGGTAACCAGGAAATAGAAGAAAAGATGGGAACAACAGAGAAGGAGACAAGGTTACATTTGTCTAATCTGAACAAACACATGAACCATCTATGGCTGCAATGGGAGACAATGTATCTAACCCAATTGAAAGAAGCAAAAGCAAAGAAAAAACATTACACGAACACCATACCGAAGGTTGGACAAGTAGTGCTAATAGAAGAAAGACTAAGATGTAGACACAAATAGCAGATGGCTAAAATCACTGAGATTCATCCGAATGCTCAAGGCCAAATCAGAACTGTCACTATCAAATATGGAGGCATGGAAGTCTTGAGATCCGTGAACCAATTGATTCCATTGGAATTAGAGGAAGAATCTACCGCTTTGGAAAAGGCAGAGCACAAGGAAGAAAACACCACTGAACCAGAACCACTTGATGATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATAAGAAAGAGACTAGACAGAAAGGCCAAACAAGGAGTCACGTATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGATTGACTATCACTTATTCACGACTTTTCTCTTATTAAATACATCCCATATCATTATCCTTGTTTTCTATGTTTGAGTCAGCCGCATTCGTCTTCTTGCCTACACCACCCACGACGCCATATTTGAATCACCGCCAATTTGAGGACTACTGTAACCTGCACATCTAACTCTCGACACGACCAAGGACGCGCCCGGTTTGGGGATCAATTTCTTCTGCAAAATTAGGCTTCTTGTTGTTTCCTTTTTCGTACTGTGTTG</canonical>
            <polymorphic>GGGAGAAGTGATACGACCAGTTGATTTCATCAATCCAGAAGTGAAGCTGGAAATCTTACATGATCCGGGTAACCAGGAAATAGAAGAAAAGATGGGAACAACAGAGAAGGAGACAAGGTTACATTTGTCTAATCTGAACAAACACATGAACCATCTATGGCTGCAATGGGAGACAATGTATCTAACCCAATTGAAAGAAGCAAAAGCAAAGAAAAAACATTACACGAACACCATACCGAAGGTTGGACAAGTAGTGCTAATAGAAGAAAGACTAAGATGTAGACACAAATAGCAGATGGCTAAAATCACTGAGATTCATCCGAATGCTCAAGGCCAAATCAGAACTGTCACTATCAAATATGGAGGCATGGAAGTCTTGAGATCCGTGAACCAATTGATTCCATTGGAATTAGAGGAAGAATCTACCGCTTTGGAAAAGGCAGAGCACAAGGAAGAAAACACCACTGAACCAGAACCACTTGATGATCTTCAGAAGATTWAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATAAGAAAGAGACTAGACAGAAAGGCCAAACAAGGAGTCACGTATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGATTGACTATCACTTATTCACGACTTTTCTCTTATTAAATACATCCCATATCATTATCCTTGTTTTCTATGTTTGAGTCAGCCGCATTCGTCTTCTTGCCTACACCACCCACGACGCCATATTTGAATCACCGCCAATTTGAGGACTACTGTAACCTGCACATCTAACTCTCGACACGACCAAGGACGCGCCCGGTTTGGGGATCAATTTCTTCTGCAAAATTAGGCTTCTTGTTGTTTCCTTTTTCGTACTGTGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>499 278 223</canonical_bands>
                <polymorphic_bands>777 223</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAACTGTCACTATCAAATATGG</pcr_primer_p1>
		<pcr_primer_p2>CATGATACGTGACTCCTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGAACTGTCACTATCAAATATGGAGGCATGGAAGTCTTGAGATCCGTGAACCAATTGATTCCATTGGAATTAGAGGAAGAATCTACCGCTTTGGAAAAGGCAGAGCACAAGGAAGAAAACACCACTGAACCAGAACCACTTGATGATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATAAGAAAGAGACTAGACAGAAAGGCCAAACAAGGAGTCACGTATCATG</canonical_amplicon>
		<polymorphic_amplicon>CAGAACTGTCACTATCAAATATGGAGGCATGGAAGTCTTGAGATCCGTGAACCAATTGATTCCATTGGAATTAGAGGAAGAATCTACCGCTTTGGAAAAGGCAGAGCACAAGGAAGAAAACACCACTGAACCAGAACCACTTGATGATCTTCAGAAGATTWAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATAAGAAAGAGACTAGACAGAAAGGCCAAACAAGGAGTCACGTATCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30782</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>85470</contig_pos>
        <strand></strand>
        <context>GATTGTGATG[T/C]GGCAAAAACA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAGACTAGACAGAAAGGCCAAACAAGGAGTCACGTATCATGATTGTGATG</left_flank>
        <right_flank>GGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAAT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAACAGAGAAGGAGACAAGGTTACATTTGTCTAATCTGAACAAACACATGAACCATCTATGGCTGCAATGGGAGACAATGTATCTAACCCAATTGAAAGAAGCAAAAGCAAAGAAAAAACATTACACGAACACCATACCGAAGGTTGGACAAGTAGTGCTAATAGAAGAAAGACTAAGATGTAGACACAAATAGCAGATGGCTAAAATCACTGAGATTCATCCGAATGCTCAAGGCCAAATCAGAACTGTCACTATCAAATATGGAGGCATGGAAGTCTTGAGATCCGTGAACCAATTGATTCCATTGGAATTAGAGGAAGAATCTACCGCTTTGGAAAAGGCAGAGCACAAGGAAGAAAACACCACTGAACCAGAACCACTTGATGATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATAAGAAAGAGACTAGACAGAAAGGCCAAACAAGGAGTCACGTATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGATTGACTATCACTTATTCACGACTTTTCTCTTATTAAATACATCCCATATCATTATCCTTGTTTTCTATGTTTGAGTCAGCCGCATTCGTCTTCTTGCCTACACCACCCACGACGCCATATTTGAATCACCGCCAATTTGAGGACTACTGTAACCTGCACATCTAACTCTCGACACGACCAAGGACGCGCCCGGTTTGGGGATCAATTTCTTCTGCAAAATTAGGCTTCTTGTTGTTTCCTTTTTCGTACTGTGTTGATGCTATTTTTTCCCTCACAAATTATTGTATTTGCTTGGCAGAGAAGGTTCTAATAAAGAACCAGAGTGTAGGCAAAGAAAAAGGTGAATAAATTCG</canonical>
            <polymorphic>ACAACAGAGAAGGAGACAAGGTTACATTTGTCTAATCTGAACAAACACATGAACCATCTATGGCTGCAATGGGAGACAATGTATCTAACCCAATTGAAAGAAGCAAAAGCAAAGAAAAAACATTACACGAACACCATACCGAAGGTTGGACAAGTAGTGCTAATAGAAGAAAGACTAAGATGTAGACACAAATAGCAGATGGCTAAAATCACTGAGATTCATCCGAATGCTCAAGGCCAAATCAGAACTGTCACTATCAAATATGGAGGCATGGAAGTCTTGAGATCCGTGAACCAATTGATTCCATTGGAATTAGAGGAAGAATCTACCGCTTTGGAAAAGGCAGAGCACAAGGAAGAAAACACCACTGAACCAGAACCACTTGATGATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATAAGAAAGAGACTAGACAGAAAGGCCAAACAAGGAGTCACGTATCATGATTGTGATGYGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGATTGACTATCACTTATTCACGACTTTTCTCTTATTAAATACATCCCATATCATTATCCTTGTTTTCTATGTTTGAGTCAGCCGCATTCGTCTTCTTGCCTACACCACCCACGACGCCATATTTGAATCACCGCCAATTTGAGGACTACTGTAACCTGCACATCTAACTCTCGACACGACCAAGGACGCGCCCGGTTTGGGGATCAATTTCTTCTGCAAAATTAGGCTTCTTGTTGTTTCCTTTTTCGTACTGTGTTGATGCTATTTTTTCCCTCACAAATTATTGTATTTGCTTGGCAGAGAAGGTTCTAATAAAGAACCAGAGTGTAGGCAAAGAAAAAGGTGAATAAATTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>84 80 79 60 59 53 51 48 47 42 38 30 29 28 26 23 21 19 18 16 15 15 14 14 14 13 11 10 9 8 6 5 5 4 3 3</canonical_bands>
                <polymorphic_bands>84 80 79 60 59 53 51 48 47 42 38 30 29 28 26 23 21 19 18 16 15 15 14 14 14 14 13 11 10 8 6 5 4 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTGAACCAGAACCACTTGAT</pcr_primer_p1>
		<pcr_primer_p2>ACTCTTTTCCCTCTCTGGTATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTGAACCAGAACCACTTGATGATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATAAGAAAGAGACTAGACAGAAAGGCCAAACAAGGAGTCACGTATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAAGAGT</canonical_amplicon>
		<polymorphic_amplicon>ACTGAACCAGAACCACTTGATGATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATAAGAAAGAGACTAGACAGAAAGGCCAAACAAGGAGTCACGTATCATGATTGTGATGYGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30783</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>85504</contig_pos>
        <strand></strand>
        <context>TCCAGAGAAA[G/A]AACGAAAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAA</left_flank>
        <right_flank>AACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCAC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTGAACAAACACATGAACCATCTATGGCTGCAATGGGAGACAATGTATCTAACCCAATTGAAAGAAGCAAAAGCAAAGAAAAAACATTACACGAACACCATACCGAAGGTTGGACAAGTAGTGCTAATAGAAGAAAGACTAAGATGTAGACACAAATAGCAGATGGCTAAAATCACTGAGATTCATCCGAATGCTCAAGGCCAAATCAGAACTGTCACTATCAAATATGGAGGCATGGAAGTCTTGAGATCCGTGAACCAATTGATTCCATTGGAATTAGAGGAAGAATCTACCGCTTTGGAAAAGGCAGAGCACAAGGAAGAAAACACCACTGAACCAGAACCACTTGATGATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATAAGAAAGAGACTAGACAGAAAGGCCAAACAAGGAGTCACGTATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGATTGACTATCACTTATTCACGACTTTTCTCTTATTAAATACATCCCATATCATTATCCTTGTTTTCTATGTTTGAGTCAGCCGCATTCGTCTTCTTGCCTACACCACCCACGACGCCATATTTGAATCACCGCCAATTTGAGGACTACTGTAACCTGCACATCTAACTCTCGACACGACCAAGGACGCGCCCGGTTTGGGGATCAATTTCTTCTGCAAAATTAGGCTTCTTGTTGTTTCCTTTTTCGTACTGTGTTGATGCTATTTTTTCCCTCACAAATTATTGTATTTGCTTGGCAGAGAAGGTTCTAATAAAGAACCAGAGTGTAGGCAAAGAAAAAGGTGAATAAATTCGGTATGTCTTGTACAACGGTGTTTTTGTCGTCTTT</canonical>
            <polymorphic>ATCTGAACAAACACATGAACCATCTATGGCTGCAATGGGAGACAATGTATCTAACCCAATTGAAAGAAGCAAAAGCAAAGAAAAAACATTACACGAACACCATACCGAAGGTTGGACAAGTAGTGCTAATAGAAGAAAGACTAAGATGTAGACACAAATAGCAGATGGCTAAAATCACTGAGATTCATCCGAATGCTCAAGGCCAAATCAGAACTGTCACTATCAAATATGGAGGCATGGAAGTCTTGAGATCCGTGAACCAATTGATTCCATTGGAATTAGAGGAAGAATCTACCGCTTTGGAAAAGGCAGAGCACAAGGAAGAAAACACCACTGAACCAGAACCACTTGATGATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATAAGAAAGAGACTAGACAGAAAGGCCAAACAAGGAGTCACGTATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAARAACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGATTGACTATCACTTATTCACGACTTTTCTCTTATTAAATACATCCCATATCATTATCCTTGTTTTCTATGTTTGAGTCAGCCGCATTCGTCTTCTTGCCTACACCACCCACGACGCCATATTTGAATCACCGCCAATTTGAGGACTACTGTAACCTGCACATCTAACTCTCGACACGACCAAGGACGCGCCCGGTTTGGGGATCAATTTCTTCTGCAAAATTAGGCTTCTTGTTGTTTCCTTTTTCGTACTGTGTTGATGCTATTTTTTCCCTCACAAATTATTGTATTTGCTTGGCAGAGAAGGTTCTAATAAAGAACCAGAGTGTAGGCAAAGAAAAAGGTGAATAAATTCGGTATGTCTTGTACAACGGTGTTTTTGTCGTCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTGAACCAGAACCACTTGAT</pcr_primer_p1>
		<pcr_primer_p2>ACTCTTTTCCCTCTCTGGTATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTGAACCAGAACCACTTGATGATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATAAGAAAGAGACTAGACAGAAAGGCCAAACAAGGAGTCACGTATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAAGAGT</canonical_amplicon>
		<polymorphic_amplicon>ACTGAACCAGAACCACTTGATGATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATAAGAAAGAGACTAGACAGAAAGGCCAAACAAGGAGTCACGTATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAARAACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30784</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>85532</contig_pos>
        <strand></strand>
        <context>AAGGGAACCA[A/T]CGAGAACACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCA</left_flank>
        <right_flank>CGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTGCAATGGGAGACAATGTATCTAACCCAATTGAAAGAAGCAAAAGCAAAGAAAAAACATTACACGAACACCATACCGAAGGTTGGACAAGTAGTGCTAATAGAAGAAAGACTAAGATGTAGACACAAATAGCAGATGGCTAAAATCACTGAGATTCATCCGAATGCTCAAGGCCAAATCAGAACTGTCACTATCAAATATGGAGGCATGGAAGTCTTGAGATCCGTGAACCAATTGATTCCATTGGAATTAGAGGAAGAATCTACCGCTTTGGAAAAGGCAGAGCACAAGGAAGAAAACACCACTGAACCAGAACCACTTGATGATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATAAGAAAGAGACTAGACAGAAAGGCCAAACAAGGAGTCACGTATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGATTGACTATCACTTATTCACGACTTTTCTCTTATTAAATACATCCCATATCATTATCCTTGTTTTCTATGTTTGAGTCAGCCGCATTCGTCTTCTTGCCTACACCACCCACGACGCCATATTTGAATCACCGCCAATTTGAGGACTACTGTAACCTGCACATCTAACTCTCGACACGACCAAGGACGCGCCCGGTTTGGGGATCAATTTCTTCTGCAAAATTAGGCTTCTTGTTGTTTCCTTTTTCGTACTGTGTTGATGCTATTTTTTCCCTCACAAATTATTGTATTTGCTTGGCAGAGAAGGTTCTAATAAAGAACCAGAGTGTAGGCAAAGAAAAAGGTGAATAAATTCGGTATGTCTTGTACAACGGTGTTTTTGTCGTCTTTATCTTTTCAGGTTTTATGTCTCTATTTT</canonical>
            <polymorphic>GCTGCAATGGGAGACAATGTATCTAACCCAATTGAAAGAAGCAAAAGCAAAGAAAAAACATTACACGAACACCATACCGAAGGTTGGACAAGTAGTGCTAATAGAAGAAAGACTAAGATGTAGACACAAATAGCAGATGGCTAAAATCACTGAGATTCATCCGAATGCTCAAGGCCAAATCAGAACTGTCACTATCAAATATGGAGGCATGGAAGTCTTGAGATCCGTGAACCAATTGATTCCATTGGAATTAGAGGAAGAATCTACCGCTTTGGAAAAGGCAGAGCACAAGGAAGAAAACACCACTGAACCAGAACCACTTGATGATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATAAGAAAGAGACTAGACAGAAAGGCCAAACAAGGAGTCACGTATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCAWCGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGATTGACTATCACTTATTCACGACTTTTCTCTTATTAAATACATCCCATATCATTATCCTTGTTTTCTATGTTTGAGTCAGCCGCATTCGTCTTCTTGCCTACACCACCCACGACGCCATATTTGAATCACCGCCAATTTGAGGACTACTGTAACCTGCACATCTAACTCTCGACACGACCAAGGACGCGCCCGGTTTGGGGATCAATTTCTTCTGCAAAATTAGGCTTCTTGTTGTTTCCTTTTTCGTACTGTGTTGATGCTATTTTTTCCCTCACAAATTATTGTATTTGCTTGGCAGAGAAGGTTCTAATAAAGAACCAGAGTGTAGGCAAAGAAAAAGGTGAATAAATTCGGTATGTCTTGTACAACGGTGTTTTTGTCGTCTTTATCTTTTCAGGTTTTATGTCTCTATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTGAACCAGAACCACTTGAT</pcr_primer_p1>
		<pcr_primer_p2>ACTCTTTTCCCTCTCTGGTATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTGAACCAGAACCACTTGATGATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATAAGAAAGAGACTAGACAGAAAGGCCAAACAAGGAGTCACGTATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAAGAGT</canonical_amplicon>
		<polymorphic_amplicon>ACTGAACCAGAACCACTTGATGATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATAAGAAAGAGACTAGACAGAAAGGCCAAACAAGGAGTCACGTATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCAWCGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30785</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>85561</contig_pos>
        <strand></strand>
        <context>CCACGGGTAC[T/C]CCGAATACCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTAC</left_flank>
        <right_flank>CCGAATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTC</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGAAAGAAGCAAAAGCAAAGAAAAAACATTACACGAACACCATACCGAAGGTTGGACAAGTAGTGCTAATAGAAGAAAGACTAAGATGTAGACACAAATAGCAGATGGCTAAAATCACTGAGATTCATCCGAATGCTCAAGGCCAAATCAGAACTGTCACTATCAAATATGGAGGCATGGAAGTCTTGAGATCCGTGAACCAATTGATTCCATTGGAATTAGAGGAAGAATCTACCGCTTTGGAAAAGGCAGAGCACAAGGAAGAAAACACCACTGAACCAGAACCACTTGATGATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATAAGAAAGAGACTAGACAGAAAGGCCAAACAAGGAGTCACGTATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGATTGACTATCACTTATTCACGACTTTTCTCTTATTAAATACATCCCATATCATTATCCTTGTTTTCTATGTTTGAGTCAGCCGCATTCGTCTTCTTGCCTACACCACCCACGACGCCATATTTGAATCACCGCCAATTTGAGGACTACTGTAACCTGCACATCTAACTCTCGACACGACCAAGGACGCGCCCGGTTTGGGGATCAATTTCTTCTGCAAAATTAGGCTTCTTGTTGTTTCCTTTTTCGTACTGTGTTGATGCTATTTTTTCCCTCACAAATTATTGTATTTGCTTGGCAGAGAAGGTTCTAATAAAGAACCAGAGTGTAGGCAAAGAAAAAGGTGAATAAATTCGGTATGTCTTGTACAACGGTGTTTTTGTCGTCTTTATCTTTTCAGGTTTTATGTCTCTATTTTGGGTCGTTTTAGAGGTTCCCTTCAAAACA</canonical>
            <polymorphic>AATTGAAAGAAGCAAAAGCAAAGAAAAAACATTACACGAACACCATACCGAAGGTTGGACAAGTAGTGCTAATAGAAGAAAGACTAAGATGTAGACACAAATAGCAGATGGCTAAAATCACTGAGATTCATCCGAATGCTCAAGGCCAAATCAGAACTGTCACTATCAAATATGGAGGCATGGAAGTCTTGAGATCCGTGAACCAATTGATTCCATTGGAATTAGAGGAAGAATCTACCGCTTTGGAAAAGGCAGAGCACAAGGAAGAAAACACCACTGAACCAGAACCACTTGATGATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATAAGAAAGAGACTAGACAGAAAGGCCAAACAAGGAGTCACGTATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTACYCCGAATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGATTGACTATCACTTATTCACGACTTTTCTCTTATTAAATACATCCCATATCATTATCCTTGTTTTCTATGTTTGAGTCAGCCGCATTCGTCTTCTTGCCTACACCACCCACGACGCCATATTTGAATCACCGCCAATTTGAGGACTACTGTAACCTGCACATCTAACTCTCGACACGACCAAGGACGCGCCCGGTTTGGGGATCAATTTCTTCTGCAAAATTAGGCTTCTTGTTGTTTCCTTTTTCGTACTGTGTTGATGCTATTTTTTCCCTCACAAATTATTGTATTTGCTTGGCAGAGAAGGTTCTAATAAAGAACCAGAGTGTAGGCAAAGAAAAAGGTGAATAAATTCGGTATGTCTTGTACAACGGTGTTTTTGTCGTCTTTATCTTTTCAGGTTTTATGTCTCTATTTTGGGTCGTTTTAGAGGTTCCCTTCAAAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>498 183 151 133 20 15</canonical_bands>
                <polymorphic_bands>513 183 151 133 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAACAAGGAGTCACGTATCA</pcr_primer_p1>
		<pcr_primer_p2>CAAGGATAATGATATGGGATGTA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CAAACAAGGAGTCACGTATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGATTGACTATCACTTATTCACGACTTTTCTCTTATTAAATACATCCCATATCATTATCCTTG</canonical_amplicon>
		<polymorphic_amplicon>CAAACAAGGAGTCACGTATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTACYCCGAATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGATTGACTATCACTTATTCACGACTTTTCTCTTATTAAATACATCCCATATCATTATCCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30786</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>85618</contig_pos>
        <strand></strand>
        <context>ATTCAAGTGA[T/A]TGAYTATCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGA</left_flank>
        <right_flank>TGACTATCACTTATTCACGACTTTTCTCTTATTAAATACATCCCATATCA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACAAGTAGTGCTAATAGAAGAAAGACTAAGATGTAGACACAAATAGCAGATGGCTAAAATCACTGAGATTCATCCGAATGCTCAAGGCCAAATCAGAACTGTCACTATCAAATATGGAGGCATGGAAGTCTTGAGATCCGTGAACCAATTGATTCCATTGGAATTAGAGGAAGAATCTACCGCTTTGGAAAAGGCAGAGCACAAGGAAGAAAACACCACTGAACCAGAACCACTTGATGATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATAAGAAAGAGACTAGACAGAAAGGCCAAACAAGGAGTCACGTATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGATTGACTATCACTTATTCACGACTTTTCTCTTATTAAATACATCCCATATCATTATCCTTGTTTTCTATGTTTGAGTCAGCCGCATTCGTCTTCTTGCCTACACCACCCACGACGCCATATTTGAATCACCGCCAATTTGAGGACTACTGTAACCTGCACATCTAACTCTCGACACGACCAAGGACGCGCCCGGTTTGGGGATCAATTTCTTCTGCAAAATTAGGCTTCTTGTTGTTTCCTTTTTCGTACTGTGTTGATGCTATTTTTTCCCTCACAAATTATTGTATTTGCTTGGCAGAGAAGGTTCTAATAAAGAACCAGAGTGTAGGCAAAGAAAAAGGTGAATAAATTCGGTATGTCTTGTACAACGGTGTTTTTGTCGTCTTTATCTTTTCAGGTTTTATGTCTCTATTTTGGGTCGTTTTAGAGGTTCCCTTCAAAACAACGCCCACAAGGCTTCCTCTTCGATTCTTTTACAAGCATAAGCTTCCATGGTGACTT</canonical>
            <polymorphic>GACAAGTAGTGCTAATAGAAGAAAGACTAAGATGTAGACACAAATAGCAGATGGCTAAAATCACTGAGATTCATCCGAATGCTCAAGGCCAAATCAGAACTGTCACTATCAAATATGGAGGCATGGAAGTCTTGAGATCCGTGAACCAATTGATTCCATTGGAATTAGAGGAAGAATCTACCGCTTTGGAAAAGGCAGAGCACAAGGAAGAAAACACCACTGAACCAGAACCACTTGATGATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATAAGAAAGAGACTAGACAGAAAGGCCAAACAAGGAGTCACGTATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGAWTGACTATCACTTATTCACGACTTTTCTCTTATTAAATACATCCCATATCATTATCCTTGTTTTCTATGTTTGAGTCAGCCGCATTCGTCTTCTTGCCTACACCACCCACGACGCCATATTTGAATCACCGCCAATTTGAGGACTACTGTAACCTGCACATCTAACTCTCGACACGACCAAGGACGCGCCCGGTTTGGGGATCAATTTCTTCTGCAAAATTAGGCTTCTTGTTGTTTCCTTTTTCGTACTGTGTTGATGCTATTTTTTCCCTCACAAATTATTGTATTTGCTTGGCAGAGAAGGTTCTAATAAAGAACCAGAGTGTAGGCAAAGAAAAAGGTGAATAAATTCGGTATGTCTTGTACAACGGTGTTTTTGTCGTCTTTATCTTTTCAGGTTTTATGTCTCTATTTTGGGTCGTTTTAGAGGTTCCCTTCAAAACAACGCCCACAAGGCTTCCTCTTCGATTCTTTTACAAGCATAAGCTTCCATGGTGACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAACAAGGAGTCACGTATCA</pcr_primer_p1>
		<pcr_primer_p2>CAAGGATAATGATATGGGATGTA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CAAACAAGGAGTCACGTATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGATTGACTATCACTTATTCACGACTTTTCTCTTATTAAATACATCCCATATCATTATCCTTG</canonical_amplicon>
		<polymorphic_amplicon>CAAACAAGGAGTCACGTATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGAWTGACTATCACTTATTCACGACTTTTCTCTTATTAAATACATCCCATATCATTATCCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30787</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>85622</contig_pos>
        <strand></strand>
        <context>AAGTGAWTGA[C/T]TATCACTTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGATTGA</left_flank>
        <right_flank>TATCACTTATTCACGACTTTTCTCTTATTAAATACATCCCATATCATTAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTAGTGCTAATAGAAGAAAGACTAAGATGTAGACACAAATAGCAGATGGCTAAAATCACTGAGATTCATCCGAATGCTCAAGGCCAAATCAGAACTGTCACTATCAAATATGGAGGCATGGAAGTCTTGAGATCCGTGAACCAATTGATTCCATTGGAATTAGAGGAAGAATCTACCGCTTTGGAAAAGGCAGAGCACAAGGAAGAAAACACCACTGAACCAGAACCACTTGATGATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATAAGAAAGAGACTAGACAGAAAGGCCAAACAAGGAGTCACGTATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGATTGACTATCACTTATTCACGACTTTTCTCTTATTAAATACATCCCATATCATTATCCTTGTTTTCTATGTTTGAGTCAGCCGCATTCGTCTTCTTGCCTACACCACCCACGACGCCATATTTGAATCACCGCCAATTTGAGGACTACTGTAACCTGCACATCTAACTCTCGACACGACCAAGGACGCGCCCGGTTTGGGGATCAATTTCTTCTGCAAAATTAGGCTTCTTGTTGTTTCCTTTTTCGTACTGTGTTGATGCTATTTTTTCCCTCACAAATTATTGTATTTGCTTGGCAGAGAAGGTTCTAATAAAGAACCAGAGTGTAGGCAAAGAAAAAGGTGAATAAATTCGGTATGTCTTGTACAACGGTGTTTTTGTCGTCTTTATCTTTTCAGGTTTTATGTCTCTATTTTGGGTCGTTTTAGAGGTTCCCTTCAAAACAACGCCCACAAGGCTTCCTCTTCGATTCTTTTACAAGCATAAGCTTCCATGGTGACTTCGAA</canonical>
            <polymorphic>AGTAGTGCTAATAGAAGAAAGACTAAGATGTAGACACAAATAGCAGATGGCTAAAATCACTGAGATTCATCCGAATGCTCAAGGCCAAATCAGAACTGTCACTATCAAATATGGAGGCATGGAAGTCTTGAGATCCGTGAACCAATTGATTCCATTGGAATTAGAGGAAGAATCTACCGCTTTGGAAAAGGCAGAGCACAAGGAAGAAAACACCACTGAACCAGAACCACTTGATGATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATAAGAAAGAGACTAGACAGAAAGGCCAAACAAGGAGTCACGTATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGATTGAYTATCACTTATTCACGACTTTTCTCTTATTAAATACATCCCATATCATTATCCTTGTTTTCTATGTTTGAGTCAGCCGCATTCGTCTTCTTGCCTACACCACCCACGACGCCATATTTGAATCACCGCCAATTTGAGGACTACTGTAACCTGCACATCTAACTCTCGACACGACCAAGGACGCGCCCGGTTTGGGGATCAATTTCTTCTGCAAAATTAGGCTTCTTGTTGTTTCCTTTTTCGTACTGTGTTGATGCTATTTTTTCCCTCACAAATTATTGTATTTGCTTGGCAGAGAAGGTTCTAATAAAGAACCAGAGTGTAGGCAAAGAAAAAGGTGAATAAATTCGGTATGTCTTGTACAACGGTGTTTTTGTCGTCTTTATCTTTTCAGGTTTTATGTCTCTATTTTGGGTCGTTTTAGAGGTTCCCTTCAAAACAACGCCCACAAGGCTTCCTCTTCGATTCTTTTACAAGCATAAGCTTCCATGGTGACTTCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAACAAGGAGTCACGTATCA</pcr_primer_p1>
		<pcr_primer_p2>CAAGGATAATGATATGGGATGTA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CAAACAAGGAGTCACGTATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGATTGACTATCACTTATTCACGACTTTTCTCTTATTAAATACATCCCATATCATTATCCTTG</canonical_amplicon>
		<polymorphic_amplicon>CAAACAAGGAGTCACGTATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGATTGAYTATCACTTATTCACGACTTTTCTCTTATTAAATACATCCCATATCATTATCCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30788</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>85646</contig_pos>
        <strand></strand>
        <context>CGACTTTTCT[C/G]TTATTAAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCAGTGTCGCGAATTCAAGTGATTGACTATCACTTATTCACGACTTTTCT</left_flank>
        <right_flank>TTATTAAATACATCCCATATCATTATCCTTGTTTTCTATGTTTGAGTCAG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGATGTAGACACAAATAGCAGATGGCTAAAATCACTGAGATTCATCCGAATGCTCAAGGCCAAATCAGAACTGTCACTATCAAATATGGAGGCATGGAAGTCTTGAGATCCGTGAACCAATTGATTCCATTGGAATTAGAGGAAGAATCTACCGCTTTGGAAAAGGCAGAGCACAAGGAAGAAAACACCACTGAACCAGAACCACTTGATGATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATAAGAAAGAGACTAGACAGAAAGGCCAAACAAGGAGTCACGTATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGATTGACTATCACTTATTCACGACTTTTCTCTTATTAAATACATCCCATATCATTATCCTTGTTTTCTATGTTTGAGTCAGCCGCATTCGTCTTCTTGCCTACACCACCCACGACGCCATATTTGAATCACCGCCAATTTGAGGACTACTGTAACCTGCACATCTAACTCTCGACACGACCAAGGACGCGCCCGGTTTGGGGATCAATTTCTTCTGCAAAATTAGGCTTCTTGTTGTTTCCTTTTTCGTACTGTGTTGATGCTATTTTTTCCCTCACAAATTATTGTATTTGCTTGGCAGAGAAGGTTCTAATAAAGAACCAGAGTGTAGGCAAAGAAAAAGGTGAATAAATTCGGTATGTCTTGTACAACGGTGTTTTTGTCGTCTTTATCTTTTCAGGTTTTATGTCTCTATTTTGGGTCGTTTTAGAGGTTCCCTTCAAAACAACGCCCACAAGGCTTCCTCTTCGATTCTTTTACAAGCATAAGCTTCCATGGTGACTTCGAATCTGCACAAAACCCTGTAACTTGG</canonical>
            <polymorphic>AAGATGTAGACACAAATAGCAGATGGCTAAAATCACTGAGATTCATCCGAATGCTCAAGGCCAAATCAGAACTGTCACTATCAAATATGGAGGCATGGAAGTCTTGAGATCCGTGAACCAATTGATTCCATTGGAATTAGAGGAAGAATCTACCGCTTTGGAAAAGGCAGAGCACAAGGAAGAAAACACCACTGAACCAGAACCACTTGATGATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATAAGAAAGAGACTAGACAGAAAGGCCAAACAAGGAGTCACGTATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGATTGACTATCACTTATTCACGACTTTTCTSTTATTAAATACATCCCATATCATTATCCTTGTTTTCTATGTTTGAGTCAGCCGCATTCGTCTTCTTGCCTACACCACCCACGACGCCATATTTGAATCACCGCCAATTTGAGGACTACTGTAACCTGCACATCTAACTCTCGACACGACCAAGGACGCGCCCGGTTTGGGGATCAATTTCTTCTGCAAAATTAGGCTTCTTGTTGTTTCCTTTTTCGTACTGTGTTGATGCTATTTTTTCCCTCACAAATTATTGTATTTGCTTGGCAGAGAAGGTTCTAATAAAGAACCAGAGTGTAGGCAAAGAAAAAGGTGAATAAATTCGGTATGTCTTGTACAACGGTGTTTTTGTCGTCTTTATCTTTTCAGGTTTTATGTCTCTATTTTGGGTCGTTTTAGAGGTTCCCTTCAAAACAACGCCCACAAGGCTTCCTCTTCGATTCTTTTACAAGCATAAGCTTCCATGGTGACTTCGAATCTGCACAAAACCCTGTAACTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATACCAGAGAGGGAAAAGAGT</pcr_primer_p1>
		<pcr_primer_p2>AGAGTTAGATGTGCAGGTTACAG</pcr_primer_p2>
		<pcr_amplicon_size>222</pcr_amplicon_size>
		<canonical_amplicon>AATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGATTGACTATCACTTATTCACGACTTTTCTCTTATTAAATACATCCCATATCATTATCCTTGTTTTCTATGTTTGAGTCAGCCGCATTCGTCTTCTTGCCTACACCACCCACGACGCCATATTTGAATCACCGCCAATTTGAGGACTACTGTAACCTGCACATCTAACTCT</canonical_amplicon>
		<polymorphic_amplicon>AATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGATTGACTATCACTTATTCACGACTTTTCTSTTATTAAATACATCCCATATCATTATCCTTGTTTTCTATGTTTGAGTCAGCCGCATTCGTCTTCTTGCCTACACCACCCACGACGCCATATTTGAATCACCGCCAATTTGAGGACTACTGTAACCTGCACATCTAACTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30789</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>85687</contig_pos>
        <strand></strand>
        <context>GTTTTCTATG[T/G]TTGAGTCAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GACTTTTCTCTTATTAAATACATCCCATATCATTATCCTTGTTTTCTATG</left_flank>
        <right_flank>TTGAGTCAGCCGCATTCGTCTTCTTGCCTACACCACCCACGACGCCATAT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCATCCGAATGCTCAAGGCCAAATCAGAACTGTCACTATCAAATATGGAGGCATGGAAGTCTTGAGATCCGTGAACCAATTGATTCCATTGGAATTAGAGGAAGAATCTACCGCTTTGGAAAAGGCAGAGCACAAGGAAGAAAACACCACTGAACCAGAACCACTTGATGATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATAAGAAAGAGACTAGACAGAAAGGCCAAACAAGGAGTCACGTATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGATTGACTATCACTTATTCACGACTTTTCTCTTATTAAATACATCCCATATCATTATCCTTGTTTTCTATGTTTGAGTCAGCCGCATTCGTCTTCTTGCCTACACCACCCACGACGCCATATTTGAATCACCGCCAATTTGAGGACTACTGTAACCTGCACATCTAACTCTCGACACGACCAAGGACGCGCCCGGTTTGGGGATCAATTTCTTCTGCAAAATTAGGCTTCTTGTTGTTTCCTTTTTCGTACTGTGTTGATGCTATTTTTTCCCTCACAAATTATTGTATTTGCTTGGCAGAGAAGGTTCTAATAAAGAACCAGAGTGTAGGCAAAGAAAAAGGTGAATAAATTCGGTATGTCTTGTACAACGGTGTTTTTGTCGTCTTTATCTTTTCAGGTTTTATGTCTCTATTTTGGGTCGTTTTAGAGGTTCCCTTCAAAACAACGCCCACAAGGCTTCCTCTTCGATTCTTTTACAAGCATAAGCTTCCATGGTGACTTCGAATCTGCACAAAACCCTGTAACTTGGCGAACCTTGAGTTATAACTCGTCAAAAGCTCCACTCAACAG</canonical>
            <polymorphic>TTCATCCGAATGCTCAAGGCCAAATCAGAACTGTCACTATCAAATATGGAGGCATGGAAGTCTTGAGATCCGTGAACCAATTGATTCCATTGGAATTAGAGGAAGAATCTACCGCTTTGGAAAAGGCAGAGCACAAGGAAGAAAACACCACTGAACCAGAACCACTTGATGATCTTCAGAAGATTTAAAGTGGAACACAAGTTGAGGATCACATTCAGGACATAATAAGAAAGAGACTAGACAGAAAGGCCAAACAAGGAGTCACGTATCATGATTGTGATGTGGCAAAAACACTAGCTCCAGTCCTCCAGAGAAAGAACGAAAACAAGGAATCAAGGGAACCAACGAGAACACGCAGTCAGACCACGGGTACTCCGAATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGATTGACTATCACTTATTCACGACTTTTCTCTTATTAAATACATCCCATATCATTATCCTTGTTTTCTATGKTTGAGTCAGCCGCATTCGTCTTCTTGCCTACACCACCCACGACGCCATATTTGAATCACCGCCAATTTGAGGACTACTGTAACCTGCACATCTAACTCTCGACACGACCAAGGACGCGCCCGGTTTGGGGATCAATTTCTTCTGCAAAATTAGGCTTCTTGTTGTTTCCTTTTTCGTACTGTGTTGATGCTATTTTTTCCCTCACAAATTATTGTATTTGCTTGGCAGAGAAGGTTCTAATAAAGAACCAGAGTGTAGGCAAAGAAAAAGGTGAATAAATTCGGTATGTCTTGTACAACGGTGTTTTTGTCGTCTTTATCTTTTCAGGTTTTATGTCTCTATTTTGGGTCGTTTTAGAGGTTCCCTTCAAAACAACGCCCACAAGGCTTCCTCTTCGATTCTTTTACAAGCATAAGCTTCCATGGTGACTTCGAATCTGCACAAAACCCTGTAACTTGGCGAACCTTGAGTTATAACTCGTCAAAAGCTCCACTCAACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATACCAGAGAGGGAAAAGAGT</pcr_primer_p1>
		<pcr_primer_p2>AGAGTTAGATGTGCAGGTTACAG</pcr_primer_p2>
		<pcr_amplicon_size>222</pcr_amplicon_size>
		<canonical_amplicon>AATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGATTGACTATCACTTATTCACGACTTTTCTCTTATTAAATACATCCCATATCATTATCCTTGTTTTCTATGTTTGAGTCAGCCGCATTCGTCTTCTTGCCTACACCACCCACGACGCCATATTTGAATCACCGCCAATTTGAGGACTACTGTAACCTGCACATCTAACTCT</canonical_amplicon>
		<polymorphic_amplicon>AATACCAGAGAGGGAAAAGAGTCGGGCCCTGGCAGTGTCGCGAATTCAAGTGATTGACTATCACTTATTCACGACTTTTCTCTTATTAAATACATCCCATATCATTATCCTTGTTTTCTATGKTTGAGTCAGCCGCATTCGTCTTCTTGCCTACACCACCCACGACGCCATATTTGAATCACCGCCAATTTGAGGACTACTGTAACCTGCACATCTAACTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30790</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>109236</contig_pos>
        <strand>+</strand>
        <context>TTAAATTTCA[A/G]GGATGTTAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCAAATGATGCTATTAATAAAGTAAGTGGTTTATTTTAATTAAATTTCA</left_flank>
        <right_flank>GGATGTTAGTTTTGTGTCCTATGGAGCAGTGTGCGATTTTAATCTTAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTCTTGGATGGTGAGAGTTTGAAATTCTTGAAAACCACCCCCTAAAATATTCATAGCTCCAAAAGAAAAGAATATTAAAAAGAGAAAAACGGGAGAGAGAAAAAACATACTTACAGGTATTGCTGGGGAGAGTTTCCACCACCAACACCAGCCCACGTCTTCTTCGGCTCCGTTTTCCTTCCTAGACACCGTGAGATCGATTGGTGAAGAGTGTTATGGCGGCGACGACGAAAAGAGAAAGAATGGTGGCGCTGTGGAGAAAAACGTGGAGCAGCACCAAGAAGAGGACGAAGAGGAGACGAAGAAGAAGACGAAGAATAGTAGTCGTGAGGCTTTGGGAGATGGATCGGAGACGCAGAGAGGGGAGTCGACACAGCAGACACCCATCGATTCGGTGCTGGGTAGTCGTATGTTGAAGCGACCCAATTTTGGCTTCCTCTCTAATATTGCAAATGATGCTATTAATAAAGTAAGTGGTTTATTTTAATTAAATTTCAGGGATGTTAGTTTTGTGTCCTATGGAGCAGTGTGCGATTTTAATCTTAAAGTGCATAGGGACTTTTTGGGAGGTCCCCTTGGGAATTTCACTATACAATAAAAATAATTGCATTTCAGGGAACAATAATATTCGTGATTTCTTTTCTGATAATATTATGTTTTGGATATCTAACCGTTATGGGAAAATATAGAAATAATCTTGTATCCAGTTATTTGTTTGCAAGTTATCTAAATACTTTAATTTGGGTTTTTTTTTGAACTAATTTAGGAAACCCTGTAAAAAAACTATTGGTTCTAGTGATCTAGGTTCAAGCGGTCTGTTTCAATATTATGAGTTTGGTTTATTAAAATGGATACCGTAAAACTTGTAATAGAAGGGCCCCTAACTTTTAACTTTGAGCCAATTTATCTCGATTCCCGTGAAAGATATCAAAAATGTGTAAACAGACAAAACATTTCTGATATTATGATAGACACTTTATCAGTTGAAAAATTTTTAT</canonical>
            <polymorphic>AGTTCTTGGATGGTGAGAGTTTGAAATTCTTGAAAACCACCCCCTAAAATATTCATAGCTCCAAAAGAAAAGAATATTAAAAAGAGAAAAACGGGAGAGAGAAAAAACATACTTACAGGTATTGCTGGGGAGAGTTTCCACCACCAACACCAGCCCACGTCTTCTTCGGCTCCGTTTTCCTTCCTAGACACCGTGAGATCGATTGGTGAAGAGTGTTATGGCGGCGACGACGAAAAGAGAAAGAATGGTGGCGCTGTGGAGAAAAACGTGGAGCAGCACCAAGAAGAGGACGAAGAGGAGACGAAGAAGAAGACGAAGAATAGTAGTCGTGAGGCTTTGGGAGATGGATCGGAGACGCAGAGAGGGGAGTCGACACAGCAGACACCCATCGATTCGGTGCTGGGTAGTCGTATGTTGAAGCGACCCAATTTTGGCTTCCTCTCTAATATTGCAAATGATGCTATTAATAAAGTAAGTGGTTTATTTTAATTAAATTTCARGGATGTTAGTTTTGTGTCCTATGGAGCAGTGTGCGATTTTAATCTTAAAGTGCATAGGGACTTTTTGGGAGGTCCCCTTGGGAATTTCACTATACAATAAAAATAATTGCATTTCAGGGAACAATAATATTCGTGATTTCTTTTCTGATAATATTATGTTTTGGATATCTAACCGTTATGGGAAAATATAGAAATAATCTTGTATCCAGTTATTTGTTTGCAAGTTATCTAAATACTTTAATTTGGGTTTTTTTTTGAACTAATTTAGGAAACCCTGTAAAAAAACTATTGGTTCTAGTGATCTAGGTTCAAGCGGTCTGTTTCAATATTATGAGTTTGGTTTATTAAAATGGATACCGTAAAACTTGTAATAGAAGGGCCCCTAACTTTTAACTTTGAGCCAATTTATCTCGATTCCCGTGAAAGATATCAAAAATGTGTAAACAGACAAAACATTTCTGATATTATGATAGACACTTTATCAGTTGAAAAATTTTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAATATTGCAAATGATGCTATT</pcr_primer_p1>
		<pcr_primer_p2>ATATTTTCCCATAACGGTTAGAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTAATATTGCAAATGATGCTATTAATAAAGTAAGTGGTTTATTTTAATTAAATTTCAGGGATGTTAGTTTTGTGTCCTATGGAGCAGTGTGCGATTTTAATCTTAAAGTGCATAGGGACTTTTTGGGAGGTCCCCTTGGGAATTTCACTATACAATAAAAATAATTGCATTTCAGGGAACAATAATATTCGTGATTTCTTTTCTGATAATATTATGTTTTGGATATCTAACCGTTATGGGAAAATAT</canonical_amplicon>
		<polymorphic_amplicon>TCTAATATTGCAAATGATGCTATTAATAAAGTAAGTGGTTTATTTTAATTAAATTTCARGGATGTTAGTTTTGTGTCCTATGGAGCAGTGTGCGATTTTAATCTTAAAGTGCATAGGGACTTTTTGGGAGGTCCCCTTGGGAATTTCACTATACAATAAAAATAATTGCATTTCAGGGAACAATAATATTCGTGATTTCTTTTCTGATAATATTATGTTTTGGATATCTAACCGTTATGGGAAAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30791</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>117002</contig_pos>
        <strand>+</strand>
        <context>ATGCAAAGAA[A/G]GATATTACGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGAAAAACGAATAATAGGCAGATATTTTGGAAATGATATATGCAAAGAA</left_flank>
        <right_flank>GATATTACGATAGTCTTATCCCCCAGCTGAATTTCATGATGAATGCATCT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGAGCAGTTTTGAGTGTTTCAAAATAGTCTCATACAATTTTCAAAGCTCTAAAGGTGGAATCAATATTCTTCTCCTTTTGAATAGAAAAGCATCTGCTGCTTAATTTCCTGTTGTGACAACGGAAGACAAACTTTTTCCCGTTCAATGCTCTCTCTTCCATGTGTGTGTCCATTTCAAAAACGTTTTTAAGAAGACGTTTCCTCTTCCTAGCCGCCTTTTTCCTTTCCTTCTTCTTCTCATCGTTTTGTTCTTTTGGCGCCGCCACTCTCACCAAATGCCTCTCTCAACATAACAGTCGTTGCTTTCGAGCAAAAAAAAAAGAAAAGAGAGTGCTTGGCGAATCGCATAAGAGAAAAGAGAGACCTCCCGAGAGCAGTAGAAAAAGGAAAAAGAAGAGAGAAAGCATGCATACACTTTTTATGGGCTAATCGAAAAAGAGCATCGTGAAGAAAAACGAATAATAGGCAGATATTTTGGAAATGATATATGCAAAGAAAGATATTACGATAGTCTTATCCCCCAGCTGAATTTCATGATGAATGCATCTGGTTAATCCAATTTTCGCTAGCGATCCATCACTTTCGAAATCTAATCGAGAGAAAAACAAAAAGAAAAAAGTTTTCAATTCTTGAGACTCTGATCCAATTCCAAATTCAAAAAACTTTTCGAACAGCCATAAAAACTTTTGACCCATTTCCAGGATGATGGAAATCTCGCCAATAACGAAATGGGTCGCCGAAAACTTCCATCGATCCCACCTAACTCGTCGGCGTTCCCACCGCCAGCTTCGACCTCCATCAATGTCGTCAATCACACATCAATGCCTTCCACGTCTTCTGCAACAGTTCCAACATTTGTGGACGACTACAACGTCACATTACCTTCCGATCCAATAGTCGCTGAATCGTTATTGAAGGGTGGATCTCTGACTAGAAGGCATCATCAGCAGCAACAGCATCAAGCTCCAGTATATATAACATCATCTGCCAGTCGACCT</canonical>
            <polymorphic>CAAGAGCAGTTTTGAGTGTTTCAAAATAGTCTCATACAATTTTCAAAGCTCTAAAGGTGGAATCAATATTCTTCTCCTTTTGAATAGAAAAGCATCTGCTGCTTAATTTCCTGTTGTGACAACGGAAGACAAACTTTTTCCCGTTCAATGCTCTCTCTTCCATGTGTGTGTCCATTTCAAAAACGTTTTTAAGAAGACGTTTCCTCTTCCTAGCCGCCTTTTTCCTTTCCTTCTTCTTCTCATCGTTTTGTTCTTTTGGCGCCGCCACTCTCACCAAATGCCTCTCTCAACATAACAGTCGTTGCTTTCGAGCAAAAAAAAAAGAAAAGAGAGTGCTTGGCGAATCGCATAAGAGAAAAGAGAGACCTCCCGAGAGCAGTAGAAAAAGGAAAAAGAAGAGAGAAAGCATGCATACACTTTTTATGGGCTAATCGAAAAAGAGCATCGTGAAGAAAAACGAATAATAGGCAGATATTTTGGAAATGATATATGCAAAGAARGATATTACGATAGTCTTATCCCCCAGCTGAATTTCATGATGAATGCATCTGGTTAATCCAATTTTCGCTAGCGATCCATCACTTTCGAAATCTAATCGAGAGAAAAACAAAAAGAAAAAAGTTTTCAATTCTTGAGACTCTGATCCAATTCCAAATTCAAAAAACTTTTCGAACAGCCATAAAAACTTTTGACCCATTTCCAGGATGATGGAAATCTCGCCAATAACGAAATGGGTCGCCGAAAACTTCCATCGATCCCACCTAACTCGTCGGCGTTCCCACCGCCAGCTTCGACCTCCATCAATGTCGTCAATCACACATCAATGCCTTCCACGTCTTCTGCAACAGTTCCAACATTTGTGGACGACTACAACGTCACATTACCTTCCGATCCAATAGTCGCTGAATCGTTATTGAAGGGTGGATCTCTGACTAGAAGGCATCATCAGCAGCAACAGCATCAAGCTCCAGTATATATAACATCATCTGCCAGTCGACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGTGAAGAAAAACGAATAATA</pcr_primer_p1>
		<pcr_primer_p2>GTCAAAAGTTTTTATGGCTGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCGTGAAGAAAAACGAATAATAGGCAGATATTTTGGAAATGATATATGCAAAGAAAGATATTACGATAGTCTTATCCCCCAGCTGAATTTCATGATGAATGCATCTGGTTAATCCAATTTTCGCTAGCGATCCATCACTTTCGAAATCTAATCGAGAGAAAAACAAAAAGAAAAAAGTTTTCAATTCTTGAGACTCTGATCCAATTCCAAATTCAAAAAACTTTTCGAACAGCCATAAAAACTTTTGAC</canonical_amplicon>
		<polymorphic_amplicon>ATCGTGAAGAAAAACGAATAATAGGCAGATATTTTGGAAATGATATATGCAAAGAARGATATTACGATAGTCTTATCCCCCAGCTGAATTTCATGATGAATGCATCTGGTTAATCCAATTTTCGCTAGCGATCCATCACTTTCGAAATCTAATCGAGAGAAAAACAAAAAGAAAAAAGTTTTCAATTCTTGAGACTCTGATCCAATTCCAAATTCAAAAAACTTTTCGAACAGCCATAAAAACTTTTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30792</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>124295</contig_pos>
        <strand></strand>
        <context>ttgggacgga[T/C]agacgcctct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TATTAATTTTTCAAGCTTTTCAAAAGTTTACAGACTGACATTGGGACGGA</left_flank>
        <right_flank>AGACGCCTCTAGCGTTTTATTTATAAGGAAGATCAAAAACATTTTTTCAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTTGTGTCCAGTTTGTACTTTCTTTTATATATGGATCTGGGTCTGAAGTGGTTATGGTACTCGGACCGCCCACAACGTCTATCGTCTCCGTCGTTCCCCTCGATTTCAGGTGGTCTTCAAATTCATGAGTCATGCTTTTTGTATGGTTGAAAATTGAAGTCAAAGGGGGAGAAAGGTCAGGAAGTCGAGGTCAGACAAAAGGTCACATGGACAAAGAATCTAAAAAACTGGAAGGAATCCGAATGTGTTGACATAGTTGTGGTTGGATTCTGAAAAGGATCATGAAAAATGTAAAAATAGATCCACAGGCAAAACCCAAAATAAATAACAGACACAATTTTTAATATAATACCAGCAATCTGGTGCGCCTTCGGCGCGAATCAATCTAGTTTCTTACTAATTCGTGGCTCAGCTCCTCAATTATTTTTGAAGGGTCACGAAAATTTATATTAATTTTTCAAGCTTTTCAAAAGTTTACAGACTGACATTGGGACGGATAGACGCCTCTAGCGTTTTATTTATAAGGAAGATCAAAAACATTTTTTCAGTTAACAACTTTTTGATATCTTTCACAGGATCCGAGATAAATTAGATCAAAGTTGAAATTAGGGGTGGCATTCTATTAGAGTGTTTACGGTATCCAAATGTCGTTAAACATGTAGCCGATTCTATATTCAAGATGTCTAACTCAAACAATAACTGTTTCAAAATATGTTTTACGACCCATATTCTTCTCCTTATCTATTCTTTTTATGACCTCTAAATTCTTCTATAAACTGTTGTCAATAGGTTTCAGTTAAGTTGACCAATACATTACACTTGACTTCTCGCTTGACCAATTGATATATCATTGAAGGTCAATTTCAGTCGAAACCTTTTTTTCTCCGCAATTCCCGCCAATTAATTTTCAGTGTAACGATTCGTCATCCCTTCAAATGGTCATTTTGCAGTTAGTATGCAAATTGAAAAAAAAGTGAAATTGTTTGTTGGTGACCAGA</canonical>
            <polymorphic>ATGTTGTGTCCAGTTTGTACTTTCTTTTATATATGGATCTGGGTCTGAAGTGGTTATGGTACTCGGACCGCCCACAACGTCTATCGTCTCCGTCGTTCCCCTCGATTTCAGGTGGTCTTCAAATTCATGAGTCATGCTTTTTGTATGGTTGAAAATTGAAGTCAAAGGGGGAGAAAGGTCAGGAAGTCGAGGTCAGACAAAAGGTCACATGGACAAAGAATCTAAAAAACTGGAAGGAATCCGAATGTGTTGACATAGTTGTGGTTGGATTCTGAAAAGGATCATGAAAAATGTAAAAATAGATCCACAGGCAAAACCCAAAATAAATAACAGACACAATTTTTAATATAATACCAGCAATCTGGTGCGCCTTCGGCGCGAATCAATCTAGTTTCTTACTAATTCGTGGCTCAGCTCCTCAATTATTTTTGAAGGGTCACGAAAATTTATATTAATTTTTCAAGCTTTTCAAAAGTTTACAGACTGACATTGGGACGGAYAGACGCCTCTAGCGTTTTATTTATAAGGAAGATCAAAAACATTTTTTCAGTTAACAACTTTTTGATATCTTTCACAGGATCCGAGATAAATTAGATCAAAGTTGAAATTAGGGGTGGCATTCTATTAGAGTGTTTACGGTATCCAAATGTCGTTAAACATGTAGCCGATTCTATATTCAAGATGTCTAACTCAAACAATAACTGTTTCAAAATATGTTTTACGACCCATATTCTTCTCCTTATCTATTCTTTTTATGACCTCTAAATTCTTCTATAAACTGTTGTCAATAGGTTTCAGTTAAGTTGACCAATACATTACACTTGACTTCTCGCTTGACCAATTGATATATCATTGAAGGTCAATTTCAGTCGAAACCTTTTTTTCTCCGCAATTCCCGCCAATTAATTTTCAGTGTAACGATTCGTCATCCCTTCAAATGGTCATTTTGCAGTTAGTATGCAAATTGAAAAAAAAGTGAAATTGTTTGTTGGTGACCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCCAAAATAAATAACAGACACA</pcr_primer_p1>
		<pcr_primer_p2>GCTACATGTTTAACGACATTTG</pcr_primer_p2>
		<pcr_amplicon_size>350</pcr_amplicon_size>
		<canonical_amplicon>ACCCAAAATAAATAACAGACACAATTTTTAATATAATACCAGCAATCTGGTGCGCCTTCGGCGCGAATCAATCTAGTTTCTTACTAATTCGTGGCTCAGCTCCTCAATTATTTTTGAAGGGTCACGAAAATTTATATTAATTTTTCAAGCTTTTCAAAAGTTTACAGACTGACATTGGGACGGATAGACGCCTCTAGCGTTTTATTTATAAGGAAGATCAAAAACATTTTTTCAGTTAACAACTTTTTGATATCTTTCACAGGATCCGAGATAAATTAGATCAAAGTTGAAATTAGGGGTGGCATTCTATTAGAGTGTTTACGGTATCCAAATGTCGTTAAACATGTAGC</canonical_amplicon>
		<polymorphic_amplicon>ACCCAAAATAAATAACAGACACAATTTTTAATATAATACCAGCAATCTGGTGCGCCTTCGGCGCGAATCAATCTAGTTTCTTACTAATTCGTGGCTCAGCTCCTCAATTATTTTTGAAGGGTCACGAAAATTTATATTAATTTTTCAAGCTTTTCAAAAGTTTACAGACTGACATTGGGACGGAYAGACGCCTCTAGCGTTTTATTTATAAGGAAGATCAAAAACATTTTTTCAGTTAACAACTTTTTGATATCTTTCACAGGATCCGAGATAAATTAGATCAAAGTTGAAATTAGGGGTGGCATTCTATTAGAGTGTTTACGGTATCCAAATGTCGTTAAACATGTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30793</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>228424</contig_pos>
        <strand>+</strand>
        <context>ACACAATCAA[A/C]TAAAACTTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGCATAAACAGAATGTCACTCCAGTTTCTGAAAGTTGACAACACAATCAA</left_flank>
        <right_flank>TAAAACTTTGTTTTCTGATTCTCTCCGATTTGGAGATTCAAACGTTTTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAGAAACTCAGAAGTTCAGAATATCAGAAAGTCAAAGTTCGGAATTTAGAAAATTCGGAAATTCATAAACTTTGTGATTCAAAAACTCCGTAATGTGCTTTAGAGAAAATCCTGAAAATCAGATTCGTGCTAAAATTTTTAATTTGGGGAATTTGAGAAGTAGAATCTCAGAAAGTCGGAAATACGGAAACTCGAGAATACAAAATTTCAGTAATTATGAGTTCTGAAATGAAGTATTTTAATAGAGTAATCTTTAAGTTCTAGAATCGAAGTTCCGAAAATTCAGGACTCCTGAATTTCGAAACTTCTGAAAAAATTATAAATTGTCAAATTCCAAGATATTAGGGAATTAAGAAAAATTATTAGTTCTAAAAATGTGGAAATTTTGAACTGTTCGGGTATCAACTGAGACTAATTTCGGAAGGCCAGAAGGTTAAGCCCCGAAGGCGCATAAACAGAATGTCACTCCAGTTTCTGAAAGTTGACAACACAATCAAATAAAACTTTGTTTTCTGATTCTCTCCGATTTGGAGATTCAAACGTTTTAAGTGAAGCCAGGAGATTGCAGCCGCCGGCAGGCGGCGGAAATCGACTGGTCTTTTAAAATTCAATCAATGATCTTTGTAATTCGCCCGATTCGTTTATCAAACACAGTTTCTATCTCTCTTCTTTTTTTGCTATTCCCTCTAAGTCTCTCAATTTCTCAAACTGTTTATATTTTCAGTCTCCACCCAGTTTCCCTTCCGTCCATCATCATGTATCAAGACGATCATATTGGGTAAGAAATCATTCCACTTTTCGGTCTAAATGGCATCGCATTACAGTTCGGAGCACTCAACTGCAACAACTAATATTTCGCATTTGTGCGGTTTACGTATTTCTGAAAGACCACAAAAAACAAGAAAAACTGGAGTTATTTGTACCATAGGTCCAGCATGCAGCGATGTGGAGACTCTCAGAAAAATGATCAATACTGGCATGAACATCGCCAGATTGAA</canonical>
            <polymorphic>ATCAGAAACTCAGAAGTTCAGAATATCAGAAAGTCAAAGTTCGGAATTTAGAAAATTCGGAAATTCATAAACTTTGTGATTCAAAAACTCCGTAATGTGCTTTAGAGAAAATCCTGAAAATCAGATTCGTGCTAAAATTTTTAATTTGGGGAATTTGAGAAGTAGAATCTCAGAAAGTCGGAAATACGGAAACTCGAGAATACAAAATTTCAGTAATTATGAGTTCTGAAATGAAGTATTTTAATAGAGTAATCTTTAAGTTCTAGAATCGAAGTTCCGAAAATTCAGGACTCCTGAATTTCGAAACTTCTGAAAAAATTATAAATTGTCAAATTCCAAGATATTAGGGAATTAAGAAAAATTATTAGTTCTAAAAATGTGGAAATTTTGAACTGTTCGGGTATCAACTGAGACTAATTTCGGAAGGCCAGAAGGTTAAGCCCCGAAGGCGCATAAACAGAATGTCACTCCAGTTTCTGAAAGTTGACAACACAATCAAMTAAAACTTTGTTTTCTGATTCTCTCCGATTTGGAGATTCAAACGTTTTAAGTGAAGCCAGGAGATTGCAGCCGCCGGCAGGCGGCGGAAATCGACTGGTCTTTTAAAATTCAATCAATGATCTTTGTAATTCGCCCGATTCGTTTATCAAACACAGTTTCTATCTCTCTTCTTTTTTTGCTATTCCCTCTAAGTCTCTCAATTTCTCAAACTGTTTATATTTTCAGTCTCCACCCAGTTTCCCTTCCGTCCATCATCATGTATCAAGACGATCATATTGGGTAAGAAATCATTCCACTTTTCGGTCTAAATGGCATCGCATTACAGTTCGGAGCACTCAACTGCAACAACTAATATTTCGCATTTGTGCGGTTTACGTATTTCTGAAAGACCACAAAAAACAAGAAAAACTGGAGTTATTTGTACCATAGGTCCAGCATGCAGCGATGTGGAGACTCTCAGAAAAATGATCAATACTGGCATGAACATCGCCAGATTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGGGTATCAACTGAGACTAAT</pcr_primer_p1>
		<pcr_primer_p2>GAATTACAAAGATCATTGATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TCGGGTATCAACTGAGACTAATTTCGGAAGGCCAGAAGGTTAAGCCCCGAAGGCGCATAAACAGAATGTCACTCCAGTTTCTGAAAGTTGACAACACAATCAAATAAAACTTTGTTTTCTGATTCTCTCCGATTTGGAGATTCAAACGTTTTAAGTGAAGCCAGGAGATTGCAGCCGCCGGCAGGCGGCGGAAATCGACTGGTCTTTTAAAATTCAATCAATGATCTTTGTAATTC</canonical_amplicon>
		<polymorphic_amplicon>TCGGGTATCAACTGAGACTAATTTCGGAAGGCCAGAAGGTTAAGCCCCGAAGGCGCATAAACAGAATGTCACTCCAGTTTCTGAAAGTTGACAACACAATCAAMTAAAACTTTGTTTTCTGATTCTCTCCGATTTGGAGATTCAAACGTTTTAAGTGAAGCCAGGAGATTGCAGCCGCCGGCAGGCGGCGGAAATCGACTGGTCTTTTAAAATTCAATCAATGATCTTTGTAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30794</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>231194</contig_pos>
        <strand>+</strand>
        <context>ATCATATTGC[G/T]AAAAAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGTTTTCAAAAAAGAACAACTGATCACCTCGTGGTGGATATCATATTGC</left_flank>
        <right_flank>AAAAAAAAAATAAAGTTTCTAACTTTTAAAGAGGAGGCGGGAATGGAGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTCCCAGATGGTCTCAGATGTATCCAAATATTCCAGAACCGCCCGTTTGTGTTCTCGTTATCGTCCTCCAGTTCCAATCATTACTGTCTCACGTGACGAACAGATCTCCCGTCAACTTCATCTTCATAGAGGCATTTTCCCAGTCTACTATCCAAGTAGGGTTCTAAAAGCCAATCAAAAACCTTCATAAAATAATTTCAGAAGGACGTATCGAAGAATGGGATGTGGATGTGGAAGAGCGTGTTCAATACGGAGTGAATTTGGGAAAGACTCGCGGATTCATTCATCCTGGTGACCCGCTTATCGTCATCACCGGATGGAAACAAGGAGCCGGATTCACAAATACAATGAGAATCGTTACTGCTTCATAATTTCTTTGTACTTATTTTTGTAGTTAAGTTATATAAGTTTTTTTCGTTTCACATATTTTATAAAATTGTCGTTTACTTCGTTTTCAAAAAAGAACAACTGATCACCTCGTGGTGGATATCATATTGCAAAAAAAAAAATAAAGTTTCTAACTTTTAAAGAGGAGGCGGGAATGGAGCAGTTGTCTCCTTATCATTTTTTCTAAACCGTTTTGTTCAGTTTCCAACAACACCACAAATTCGACTATTTTTGTTTTTCCATTTTCTTCATTTTTTCATTTCTTTTCCGCTTTCTCATGATCAGAACGGGAAATCGAAATTGCTTCTTTCCAGACTCCAATCTTTACAACATGCAAAACATCGCGATCTGCACAGCACTACTGGTAAGTTGCAACTGTCGTCGTAAAAGCTGTAATGGAACGGTCTCTAACTTTAACTTCGAGCCAGTTCATCTCAATTCCTGTTAAAGATTTTAAAAAGTTGTCAGCTGATAGACTGTTCATCATAATTCTACCAACATTTTATCAGTTGACATAGCTTTCATATCTCTCATAGGAGCTGAGATAATTGGCTCAAACTGGACAGTGTGGGGCGCCATGTATTACAGGTTTTACGGTAAGTTGACATTGAA</canonical>
            <polymorphic>GGTCCCAGATGGTCTCAGATGTATCCAAATATTCCAGAACCGCCCGTTTGTGTTCTCGTTATCGTCCTCCAGTTCCAATCATTACTGTCTCACGTGACGAACAGATCTCCCGTCAACTTCATCTTCATAGAGGCATTTTCCCAGTCTACTATCCAAGTAGGGTTCTAAAAGCCAATCAAAAACCTTCATAAAATAATTTCAGAAGGACGTATCGAAGAATGGGATGTGGATGTGGAAGAGCGTGTTCAATACGGAGTGAATTTGGGAAAGACTCGCGGATTCATTCATCCTGGTGACCCGCTTATCGTCATCACCGGATGGAAACAAGGAGCCGGATTCACAAATACAATGAGAATCGTTACTGCTTCATAATTTCTTTGTACTTATTTTTGTAGTTAAGTTATATAAGTTTTTTTCGTTTCACATATTTTATAAAATTGTCGTTTACTTCGTTTTCAAAAAAGAACAACTGATCACCTCGTGGTGGATATCATATTGCKAAAAAAAAAATAAAGTTTCTAACTTTTAAAGAGGAGGCGGGAATGGAGCAGTTGTCTCCTTATCATTTTTTCTAAACCGTTTTGTTCAGTTTCCAACAACACCACAAATTCGACTATTTTTGTTTTTCCATTTTCTTCATTTTTTCATTTCTTTTCCGCTTTCTCATGATCAGAACGGGAAATCGAAATTGCTTCTTTCCAGACTCCAATCTTTACAACATGCAAAACATCGCGATCTGCACAGCACTACTGGTAAGTTGCAACTGTCGTCGTAAAAGCTGTAATGGAACGGTCTCTAACTTTAACTTCGAGCCAGTTCATCTCAATTCCTGTTAAAGATTTTAAAAAGTTGTCAGCTGATAGACTGTTCATCATAATTCTACCAACATTTTATCAGTTGACATAGCTTTCATATCTCTCATAGGAGCTGAGATAATTGGCTCAAACTGGACAGTGTGGGGCGCCATGTATTACAGGTTTTACGGTAAGTTGACATTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>498 240 224 21 17</canonical_bands>
                <polymorphic_bands>722 240 21 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAATCGTTACTGCTTCATAAT</pcr_primer_p1>
		<pcr_primer_p2>GTTGTTGGAAACTGAACAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGAATCGTTACTGCTTCATAATTTCTTTGTACTTATTTTTGTAGTTAAGTTATATAAGTTTTTTTCGTTTCACATATTTTATAAAATTGTCGTTTACTTCGTTTTCAAAAAAGAACAACTGATCACCTCGTGGTGGATATCATATTGCAAAAAAAAAAATAAAGTTTCTAACTTTTAAAGAGGAGGCGGGAATGGAGCAGTTGTCTCCTTATCATTTTTTCTAAACCGTTTTGTTCAGTTTCCAACAAC</canonical_amplicon>
		<polymorphic_amplicon>GAGAATCGTTACTGCTTCATAATTTCTTTGTACTTATTTTTGTAGTTAAGTTATATAAGTTTTTTTCGTTTCACATATTTTATAAAATTGTCGTTTACTTCGTTTTCAAAAAAGAACAACTGATCACCTCGTGGTGGATATCATATTGCKAAAAAAAAAATAAAGTTTCTAACTTTTAAAGAGGAGGCGGGAATGGAGCAGTTGTCTCCTTATCATTTTTTCTAAACCGTTTTGTTCAGTTTCCAACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30795</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>231227</contig_pos>
        <strand></strand>
        <context>CTTTTAAAGA[G/T]GAGGCGGGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGTGGATATCATATTGCAAAAAAAAAAATAAAGTTTCTAACTTTTAAAGA</left_flank>
        <right_flank>GAGGCGGGAATGGAGCAGTTGTCTCCTTATCATTTTTTCTAAACCGTTTT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGAACCGCCCGTTTGTGTTCTCGTTATCGTCCTCCAGTTCCAATCATTACTGTCTCACGTGACGAACAGATCTCCCGTCAACTTCATCTTCATAGAGGCATTTTCCCAGTCTACTATCCAAGTAGGGTTCTAAAAGCCAATCAAAAACCTTCATAAAATAATTTCAGAAGGACGTATCGAAGAATGGGATGTGGATGTGGAAGAGCGTGTTCAATACGGAGTGAATTTGGGAAAGACTCGCGGATTCATTCATCCTGGTGACCCGCTTATCGTCATCACCGGATGGAAACAAGGAGCCGGATTCACAAATACAATGAGAATCGTTACTGCTTCATAATTTCTTTGTACTTATTTTTGTAGTTAAGTTATATAAGTTTTTTTCGTTTCACATATTTTATAAAATTGTCGTTTACTTCGTTTTCAAAAAAGAACAACTGATCACCTCGTGGTGGATATCATATTGCAAAAAAAAAAATAAAGTTTCTAACTTTTAAAGAGGAGGCGGGAATGGAGCAGTTGTCTCCTTATCATTTTTTCTAAACCGTTTTGTTCAGTTTCCAACAACACCACAAATTCGACTATTTTTGTTTTTCCATTTTCTTCATTTTTTCATTTCTTTTCCGCTTTCTCATGATCAGAACGGGAAATCGAAATTGCTTCTTTCCAGACTCCAATCTTTACAACATGCAAAACATCGCGATCTGCACAGCACTACTGGTAAGTTGCAACTGTCGTCGTAAAAGCTGTAATGGAACGGTCTCTAACTTTAACTTCGAGCCAGTTCATCTCAATTCCTGTTAAAGATTTTAAAAAGTTGTCAGCTGATAGACTGTTCATCATAATTCTACCAACATTTTATCAGTTGACATAGCTTTCATATCTCTCATAGGAGCTGAGATAATTGGCTCAAACTGGACAGTGTGGGGCGCCATGTATTACAGGTTTTACGGTAAGTTGACATTGAAAAATAGTGGATCCAAATGACTCTTCTTCTTTTA</canonical>
            <polymorphic>CCAGAACCGCCCGTTTGTGTTCTCGTTATCGTCCTCCAGTTCCAATCATTACTGTCTCACGTGACGAACAGATCTCCCGTCAACTTCATCTTCATAGAGGCATTTTCCCAGTCTACTATCCAAGTAGGGTTCTAAAAGCCAATCAAAAACCTTCATAAAATAATTTCAGAAGGACGTATCGAAGAATGGGATGTGGATGTGGAAGAGCGTGTTCAATACGGAGTGAATTTGGGAAAGACTCGCGGATTCATTCATCCTGGTGACCCGCTTATCGTCATCACCGGATGGAAACAAGGAGCCGGATTCACAAATACAATGAGAATCGTTACTGCTTCATAATTTCTTTGTACTTATTTTTGTAGTTAAGTTATATAAGTTTTTTTCGTTTCACATATTTTATAAAATTGTCGTTTACTTCGTTTTCAAAAAAGAACAACTGATCACCTCGTGGTGGATATCATATTGCAAAAAAAAAAATAAAGTTTCTAACTTTTAAAGAKGAGGCGGGAATGGAGCAGTTGTCTCCTTATCATTTTTTCTAAACCGTTTTGTTCAGTTTCCAACAACACCACAAATTCGACTATTTTTGTTTTTCCATTTTCTTCATTTTTTCATTTCTTTTCCGCTTTCTCATGATCAGAACGGGAAATCGAAATTGCTTCTTTCCAGACTCCAATCTTTACAACATGCAAAACATCGCGATCTGCACAGCACTACTGGTAAGTTGCAACTGTCGTCGTAAAAGCTGTAATGGAACGGTCTCTAACTTTAACTTCGAGCCAGTTCATCTCAATTCCTGTTAAAGATTTTAAAAAGTTGTCAGCTGATAGACTGTTCATCATAATTCTACCAACATTTTATCAGTTGACATAGCTTTCATATCTCTCATAGGAGCTGAGATAATTGGCTCAAACTGGACAGTGTGGGGCGCCATGTATTACAGGTTTTACGGTAAGTTGACATTGAAAAATAGTGGATCCAAATGACTCTTCTTCTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAATCGTTACTGCTTCATAAT</pcr_primer_p1>
		<pcr_primer_p2>GTTGTTGGAAACTGAACAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGAATCGTTACTGCTTCATAATTTCTTTGTACTTATTTTTGTAGTTAAGTTATATAAGTTTTTTTCGTTTCACATATTTTATAAAATTGTCGTTTACTTCGTTTTCAAAAAAGAACAACTGATCACCTCGTGGTGGATATCATATTGCAAAAAAAAAAATAAAGTTTCTAACTTTTAAAGAGGAGGCGGGAATGGAGCAGTTGTCTCCTTATCATTTTTTCTAAACCGTTTTGTTCAGTTTCCAACAAC</canonical_amplicon>
		<polymorphic_amplicon>GAGAATCGTTACTGCTTCATAATTTCTTTGTACTTATTTTTGTAGTTAAGTTATATAAGTTTTTTTCGTTTCACATATTTTATAAAATTGTCGTTTACTTCGTTTTCAAAAAAGAACAACTGATCACCTCGTGGTGGATATCATATTGCAAAAAAAAAAATAAAGTTTCTAACTTTTAAAGAKGAGGCGGGAATGGAGCAGTTGTCTCCTTATCATTTTTTCTAAACCGTTTTGTTCAGTTTCCAACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30796</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>231251</contig_pos>
        <strand>+</strand>
        <context>AGCAGTTGTC[C/T]CCTTATCATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATAAAGTTTCTAACTTTTAAAGAGGAGGCGGGAATGGAGCAGTTGTC</left_flank>
        <right_flank>CCTTATCATTTTTTCTAAACCGTTTTGTTCAGTTTCCAACAACACCACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTATCGTCCTCCAGTTCCAATCATTACTGTCTCACGTGACGAACAGATCTCCCGTCAACTTCATCTTCATAGAGGCATTTTCCCAGTCTACTATCCAAGTAGGGTTCTAAAAGCCAATCAAAAACCTTCATAAAATAATTTCAGAAGGACGTATCGAAGAATGGGATGTGGATGTGGAAGAGCGTGTTCAATACGGAGTGAATTTGGGAAAGACTCGCGGATTCATTCATCCTGGTGACCCGCTTATCGTCATCACCGGATGGAAACAAGGAGCCGGATTCACAAATACAATGAGAATCGTTACTGCTTCATAATTTCTTTGTACTTATTTTTGTAGTTAAGTTATATAAGTTTTTTTCGTTTCACATATTTTATAAAATTGTCGTTTACTTCGTTTTCAAAAAAGAACAACTGATCACCTCGTGGTGGATATCATATTGCAAAAAAAAAAATAAAGTTTCTAACTTTTAAAGAGGAGGCGGGAATGGAGCAGTTGTCTCCTTATCATTTTTTCTAAACCGTTTTGTTCAGTTTCCAACAACACCACAAATTCGACTATTTTTGTTTTTCCATTTTCTTCATTTTTTCATTTCTTTTCCGCTTTCTCATGATCAGAACGGGAAATCGAAATTGCTTCTTTCCAGACTCCAATCTTTACAACATGCAAAACATCGCGATCTGCACAGCACTACTGGTAAGTTGCAACTGTCGTCGTAAAAGCTGTAATGGAACGGTCTCTAACTTTAACTTCGAGCCAGTTCATCTCAATTCCTGTTAAAGATTTTAAAAAGTTGTCAGCTGATAGACTGTTCATCATAATTCTACCAACATTTTATCAGTTGACATAGCTTTCATATCTCTCATAGGAGCTGAGATAATTGGCTCAAACTGGACAGTGTGGGGCGCCATGTATTACAGGTTTTACGGTAAGTTGACATTGAAAAATAGTGGATCCAAATGACTCTTCTTCTTTTACTTTTTGTGTCATCCCTGAAATCA</canonical>
            <polymorphic>GTTATCGTCCTCCAGTTCCAATCATTACTGTCTCACGTGACGAACAGATCTCCCGTCAACTTCATCTTCATAGAGGCATTTTCCCAGTCTACTATCCAAGTAGGGTTCTAAAAGCCAATCAAAAACCTTCATAAAATAATTTCAGAAGGACGTATCGAAGAATGGGATGTGGATGTGGAAGAGCGTGTTCAATACGGAGTGAATTTGGGAAAGACTCGCGGATTCATTCATCCTGGTGACCCGCTTATCGTCATCACCGGATGGAAACAAGGAGCCGGATTCACAAATACAATGAGAATCGTTACTGCTTCATAATTTCTTTGTACTTATTTTTGTAGTTAAGTTATATAAGTTTTTTTCGTTTCACATATTTTATAAAATTGTCGTTTACTTCGTTTTCAAAAAAGAACAACTGATCACCTCGTGGTGGATATCATATTGCAAAAAAAAAAATAAAGTTTCTAACTTTTAAAGAGGAGGCGGGAATGGAGCAGTTGTCYCCTTATCATTTTTTCTAAACCGTTTTGTTCAGTTTCCAACAACACCACAAATTCGACTATTTTTGTTTTTCCATTTTCTTCATTTTTTCATTTCTTTTCCGCTTTCTCATGATCAGAACGGGAAATCGAAATTGCTTCTTTCCAGACTCCAATCTTTACAACATGCAAAACATCGCGATCTGCACAGCACTACTGGTAAGTTGCAACTGTCGTCGTAAAAGCTGTAATGGAACGGTCTCTAACTTTAACTTCGAGCCAGTTCATCTCAATTCCTGTTAAAGATTTTAAAAAGTTGTCAGCTGATAGACTGTTCATCATAATTCTACCAACATTTTATCAGTTGACATAGCTTTCATATCTCTCATAGGAGCTGAGATAATTGGCTCAAACTGGACAGTGTGGGGCGCCATGTATTACAGGTTTTACGGTAAGTTGACATTGAAAAATAGTGGATCCAAATGACTCTTCTTCTTTTACTTTTTGTGTCATCCCTGAAATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGAACAACTGATCACCTC</pcr_primer_p1>
		<pcr_primer_p2>GAGTCTGGAAAGAAGCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGAACAACTGATCACCTCGTGGTGGATATCATATTGCAAAAAAAAAAATAAAGTTTCTAACTTTTAAAGAGGAGGCGGGAATGGAGCAGTTGTCTCCTTATCATTTTTTCTAAACCGTTTTGTTCAGTTTCCAACAACACCACAAATTCGACTATTTTTGTTTTTCCATTTTCTTCATTTTTTCATTTCTTTTCCGCTTTCTCATGATCAGAACGGGAAATCGAAATTGCTTCTTTCCAGACTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGAACAACTGATCACCTCGTGGTGGATATCATATTGCAAAAAAAAAAATAAAGTTTCTAACTTTTAAAGAGGAGGCGGGAATGGAGCAGTTGTCYCCTTATCATTTTTTCTAAACCGTTTTGTTCAGTTTCCAACAACACCACAAATTCGACTATTTTTGTTTTTCCATTTTCTTCATTTTTTCATTTCTTTTCCGCTTTCTCATGATCAGAACGGGAAATCGAAATTGCTTCTTTCCAGACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30797</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>231266</contig_pos>
        <strand>+</strand>
        <context>ATCATTTTTT[C/T]TAAACCGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTTTTAAAGAGGAGGCGGGAATGGAGCAGTTGTCTCCTTATCATTTTTT</left_flank>
        <right_flank>TAAACCGTTTTGTTCAGTTTCCAACAACACCACAAATTCGACTATTTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCAATCATTACTGTCTCACGTGACGAACAGATCTCCCGTCAACTTCATCTTCATAGAGGCATTTTCCCAGTCTACTATCCAAGTAGGGTTCTAAAAGCCAATCAAAAACCTTCATAAAATAATTTCAGAAGGACGTATCGAAGAATGGGATGTGGATGTGGAAGAGCGTGTTCAATACGGAGTGAATTTGGGAAAGACTCGCGGATTCATTCATCCTGGTGACCCGCTTATCGTCATCACCGGATGGAAACAAGGAGCCGGATTCACAAATACAATGAGAATCGTTACTGCTTCATAATTTCTTTGTACTTATTTTTGTAGTTAAGTTATATAAGTTTTTTTCGTTTCACATATTTTATAAAATTGTCGTTTACTTCGTTTTCAAAAAAGAACAACTGATCACCTCGTGGTGGATATCATATTGCAAAAAAAAAAATAAAGTTTCTAACTTTTAAAGAGGAGGCGGGAATGGAGCAGTTGTCTCCTTATCATTTTTTCTAAACCGTTTTGTTCAGTTTCCAACAACACCACAAATTCGACTATTTTTGTTTTTCCATTTTCTTCATTTTTTCATTTCTTTTCCGCTTTCTCATGATCAGAACGGGAAATCGAAATTGCTTCTTTCCAGACTCCAATCTTTACAACATGCAAAACATCGCGATCTGCACAGCACTACTGGTAAGTTGCAACTGTCGTCGTAAAAGCTGTAATGGAACGGTCTCTAACTTTAACTTCGAGCCAGTTCATCTCAATTCCTGTTAAAGATTTTAAAAAGTTGTCAGCTGATAGACTGTTCATCATAATTCTACCAACATTTTATCAGTTGACATAGCTTTCATATCTCTCATAGGAGCTGAGATAATTGGCTCAAACTGGACAGTGTGGGGCGCCATGTATTACAGGTTTTACGGTAAGTTGACATTGAAAAATAGTGGATCCAAATGACTCTTCTTCTTTTACTTTTTGTGTCATCCCTGAAATCATGTTTAAAATTTTAA</canonical>
            <polymorphic>TTCCAATCATTACTGTCTCACGTGACGAACAGATCTCCCGTCAACTTCATCTTCATAGAGGCATTTTCCCAGTCTACTATCCAAGTAGGGTTCTAAAAGCCAATCAAAAACCTTCATAAAATAATTTCAGAAGGACGTATCGAAGAATGGGATGTGGATGTGGAAGAGCGTGTTCAATACGGAGTGAATTTGGGAAAGACTCGCGGATTCATTCATCCTGGTGACCCGCTTATCGTCATCACCGGATGGAAACAAGGAGCCGGATTCACAAATACAATGAGAATCGTTACTGCTTCATAATTTCTTTGTACTTATTTTTGTAGTTAAGTTATATAAGTTTTTTTCGTTTCACATATTTTATAAAATTGTCGTTTACTTCGTTTTCAAAAAAGAACAACTGATCACCTCGTGGTGGATATCATATTGCAAAAAAAAAAATAAAGTTTCTAACTTTTAAAGAGGAGGCGGGAATGGAGCAGTTGTCTCCTTATCATTTTTTYTAAACCGTTTTGTTCAGTTTCCAACAACACCACAAATTCGACTATTTTTGTTTTTCCATTTTCTTCATTTTTTCATTTCTTTTCCGCTTTCTCATGATCAGAACGGGAAATCGAAATTGCTTCTTTCCAGACTCCAATCTTTACAACATGCAAAACATCGCGATCTGCACAGCACTACTGGTAAGTTGCAACTGTCGTCGTAAAAGCTGTAATGGAACGGTCTCTAACTTTAACTTCGAGCCAGTTCATCTCAATTCCTGTTAAAGATTTTAAAAAGTTGTCAGCTGATAGACTGTTCATCATAATTCTACCAACATTTTATCAGTTGACATAGCTTTCATATCTCTCATAGGAGCTGAGATAATTGGCTCAAACTGGACAGTGTGGGGCGCCATGTATTACAGGTTTTACGGTAAGTTGACATTGAAAAATAGTGGATCCAAATGACTCTTCTTCTTTTACTTTTTGTGTCATCCCTGAAATCATGTTTAAAATTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGAACAACTGATCACCTC</pcr_primer_p1>
		<pcr_primer_p2>GAGTCTGGAAAGAAGCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGAACAACTGATCACCTCGTGGTGGATATCATATTGCAAAAAAAAAAATAAAGTTTCTAACTTTTAAAGAGGAGGCGGGAATGGAGCAGTTGTCTCCTTATCATTTTTTCTAAACCGTTTTGTTCAGTTTCCAACAACACCACAAATTCGACTATTTTTGTTTTTCCATTTTCTTCATTTTTTCATTTCTTTTCCGCTTTCTCATGATCAGAACGGGAAATCGAAATTGCTTCTTTCCAGACTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGAACAACTGATCACCTCGTGGTGGATATCATATTGCAAAAAAAAAAATAAAGTTTCTAACTTTTAAAGAGGAGGCGGGAATGGAGCAGTTGTCTCCTTATCATTTTTTYTAAACCGTTTTGTTCAGTTTCCAACAACACCACAAATTCGACTATTTTTGTTTTTCCATTTTCTTCATTTTTTCATTTCTTTTCCGCTTTCTCATGATCAGAACGGGAAATCGAAATTGCTTCTTTCCAGACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30798</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>231310</contig_pos>
        <strand>+</strand>
        <context>AAATTCGACT[A/T]TTTTTGTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTTCTAAACCGTTTTGTTCAGTTTCCAACAACACCACAAATTCGACT</left_flank>
        <right_flank>TTTTTGTTTTTCCATTTTCTTCATTTTTTCATTTCTTTTCCGCTTTCTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCATCTTCATAGAGGCATTTTCCCAGTCTACTATCCAAGTAGGGTTCTAAAAGCCAATCAAAAACCTTCATAAAATAATTTCAGAAGGACGTATCGAAGAATGGGATGTGGATGTGGAAGAGCGTGTTCAATACGGAGTGAATTTGGGAAAGACTCGCGGATTCATTCATCCTGGTGACCCGCTTATCGTCATCACCGGATGGAAACAAGGAGCCGGATTCACAAATACAATGAGAATCGTTACTGCTTCATAATTTCTTTGTACTTATTTTTGTAGTTAAGTTATATAAGTTTTTTTCGTTTCACATATTTTATAAAATTGTCGTTTACTTCGTTTTCAAAAAAGAACAACTGATCACCTCGTGGTGGATATCATATTGCAAAAAAAAAAATAAAGTTTCTAACTTTTAAAGAGGAGGCGGGAATGGAGCAGTTGTCTCCTTATCATTTTTTCTAAACCGTTTTGTTCAGTTTCCAACAACACCACAAATTCGACTATTTTTGTTTTTCCATTTTCTTCATTTTTTCATTTCTTTTCCGCTTTCTCATGATCAGAACGGGAAATCGAAATTGCTTCTTTCCAGACTCCAATCTTTACAACATGCAAAACATCGCGATCTGCACAGCACTACTGGTAAGTTGCAACTGTCGTCGTAAAAGCTGTAATGGAACGGTCTCTAACTTTAACTTCGAGCCAGTTCATCTCAATTCCTGTTAAAGATTTTAAAAAGTTGTCAGCTGATAGACTGTTCATCATAATTCTACCAACATTTTATCAGTTGACATAGCTTTCATATCTCTCATAGGAGCTGAGATAATTGGCTCAAACTGGACAGTGTGGGGCGCCATGTATTACAGGTTTTACGGTAAGTTGACATTGAAAAATAGTGGATCCAAATGACTCTTCTTCTTTTACTTTTTGTGTCATCCCTGAAATCATGTTTAAAATTTTAATAAAAAAATACTTTTTATCAATTTCGAAAACAAGAACTCAAACA</canonical>
            <polymorphic>CTTCATCTTCATAGAGGCATTTTCCCAGTCTACTATCCAAGTAGGGTTCTAAAAGCCAATCAAAAACCTTCATAAAATAATTTCAGAAGGACGTATCGAAGAATGGGATGTGGATGTGGAAGAGCGTGTTCAATACGGAGTGAATTTGGGAAAGACTCGCGGATTCATTCATCCTGGTGACCCGCTTATCGTCATCACCGGATGGAAACAAGGAGCCGGATTCACAAATACAATGAGAATCGTTACTGCTTCATAATTTCTTTGTACTTATTTTTGTAGTTAAGTTATATAAGTTTTTTTCGTTTCACATATTTTATAAAATTGTCGTTTACTTCGTTTTCAAAAAAGAACAACTGATCACCTCGTGGTGGATATCATATTGCAAAAAAAAAAATAAAGTTTCTAACTTTTAAAGAGGAGGCGGGAATGGAGCAGTTGTCTCCTTATCATTTTTTCTAAACCGTTTTGTTCAGTTTCCAACAACACCACAAATTCGACTWTTTTTGTTTTTCCATTTTCTTCATTTTTTCATTTCTTTTCCGCTTTCTCATGATCAGAACGGGAAATCGAAATTGCTTCTTTCCAGACTCCAATCTTTACAACATGCAAAACATCGCGATCTGCACAGCACTACTGGTAAGTTGCAACTGTCGTCGTAAAAGCTGTAATGGAACGGTCTCTAACTTTAACTTCGAGCCAGTTCATCTCAATTCCTGTTAAAGATTTTAAAAAGTTGTCAGCTGATAGACTGTTCATCATAATTCTACCAACATTTTATCAGTTGACATAGCTTTCATATCTCTCATAGGAGCTGAGATAATTGGCTCAAACTGGACAGTGTGGGGCGCCATGTATTACAGGTTTTACGGTAAGTTGACATTGAAAAATAGTGGATCCAAATGACTCTTCTTCTTTTACTTTTTGTGTCATCCCTGAAATCATGTTTAAAATTTTAATAAAAAAATACTTTTTATCAATTTCGAAAACAAGAACTCAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGAACAACTGATCACCTC</pcr_primer_p1>
		<pcr_primer_p2>GAGTCTGGAAAGAAGCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGAACAACTGATCACCTCGTGGTGGATATCATATTGCAAAAAAAAAAATAAAGTTTCTAACTTTTAAAGAGGAGGCGGGAATGGAGCAGTTGTCTCCTTATCATTTTTTCTAAACCGTTTTGTTCAGTTTCCAACAACACCACAAATTCGACTATTTTTGTTTTTCCATTTTCTTCATTTTTTCATTTCTTTTCCGCTTTCTCATGATCAGAACGGGAAATCGAAATTGCTTCTTTCCAGACTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGAACAACTGATCACCTCGTGGTGGATATCATATTGCAAAAAAAAAAATAAAGTTTCTAACTTTTAAAGAGGAGGCGGGAATGGAGCAGTTGTCTCCTTATCATTTTTTCTAAACCGTTTTGTTCAGTTTCCAACAACACCACAAATTCGACTWTTTTTGTTTTTCCATTTTCTTCATTTTTTCATTTCTTTTCCGCTTTCTCATGATCAGAACGGGAAATCGAAATTGCTTCTTTCCAGACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30799</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>231334</contig_pos>
        <strand></strand>
        <context>ATTTTCTTCA[T/A]TTTTTCATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTCCAACAACACCACAAATTCGACTATTTTTGTTTTTCCATTTTCTTCA</left_flank>
        <right_flank>TTTTTCATTTCTTTTCCGCTTTCTCATGATCAGAACGGGAAATCGAAATT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGTCTACTATCCAAGTAGGGTTCTAAAAGCCAATCAAAAACCTTCATAAAATAATTTCAGAAGGACGTATCGAAGAATGGGATGTGGATGTGGAAGAGCGTGTTCAATACGGAGTGAATTTGGGAAAGACTCGCGGATTCATTCATCCTGGTGACCCGCTTATCGTCATCACCGGATGGAAACAAGGAGCCGGATTCACAAATACAATGAGAATCGTTACTGCTTCATAATTTCTTTGTACTTATTTTTGTAGTTAAGTTATATAAGTTTTTTTCGTTTCACATATTTTATAAAATTGTCGTTTACTTCGTTTTCAAAAAAGAACAACTGATCACCTCGTGGTGGATATCATATTGCAAAAAAAAAAATAAAGTTTCTAACTTTTAAAGAGGAGGCGGGAATGGAGCAGTTGTCTCCTTATCATTTTTTCTAAACCGTTTTGTTCAGTTTCCAACAACACCACAAATTCGACTATTTTTGTTTTTCCATTTTCTTCATTTTTTCATTTCTTTTCCGCTTTCTCATGATCAGAACGGGAAATCGAAATTGCTTCTTTCCAGACTCCAATCTTTACAACATGCAAAACATCGCGATCTGCACAGCACTACTGGTAAGTTGCAACTGTCGTCGTAAAAGCTGTAATGGAACGGTCTCTAACTTTAACTTCGAGCCAGTTCATCTCAATTCCTGTTAAAGATTTTAAAAAGTTGTCAGCTGATAGACTGTTCATCATAATTCTACCAACATTTTATCAGTTGACATAGCTTTCATATCTCTCATAGGAGCTGAGATAATTGGCTCAAACTGGACAGTGTGGGGCGCCATGTATTACAGGTTTTACGGTAAGTTGACATTGAAAAATAGTGGATCCAAATGACTCTTCTTCTTTTACTTTTTGTGTCATCCCTGAAATCATGTTTAAAATTTTAATAAAAAAATACTTTTTATCAATTTCGAAAACAAGAACTCAAACAGACTATAACTTTTTGCAAACAATA</canonical>
            <polymorphic>CCAGTCTACTATCCAAGTAGGGTTCTAAAAGCCAATCAAAAACCTTCATAAAATAATTTCAGAAGGACGTATCGAAGAATGGGATGTGGATGTGGAAGAGCGTGTTCAATACGGAGTGAATTTGGGAAAGACTCGCGGATTCATTCATCCTGGTGACCCGCTTATCGTCATCACCGGATGGAAACAAGGAGCCGGATTCACAAATACAATGAGAATCGTTACTGCTTCATAATTTCTTTGTACTTATTTTTGTAGTTAAGTTATATAAGTTTTTTTCGTTTCACATATTTTATAAAATTGTCGTTTACTTCGTTTTCAAAAAAGAACAACTGATCACCTCGTGGTGGATATCATATTGCAAAAAAAAAAATAAAGTTTCTAACTTTTAAAGAGGAGGCGGGAATGGAGCAGTTGTCTCCTTATCATTTTTTCTAAACCGTTTTGTTCAGTTTCCAACAACACCACAAATTCGACTATTTTTGTTTTTCCATTTTCTTCAWTTTTTCATTTCTTTTCCGCTTTCTCATGATCAGAACGGGAAATCGAAATTGCTTCTTTCCAGACTCCAATCTTTACAACATGCAAAACATCGCGATCTGCACAGCACTACTGGTAAGTTGCAACTGTCGTCGTAAAAGCTGTAATGGAACGGTCTCTAACTTTAACTTCGAGCCAGTTCATCTCAATTCCTGTTAAAGATTTTAAAAAGTTGTCAGCTGATAGACTGTTCATCATAATTCTACCAACATTTTATCAGTTGACATAGCTTTCATATCTCTCATAGGAGCTGAGATAATTGGCTCAAACTGGACAGTGTGGGGCGCCATGTATTACAGGTTTTACGGTAAGTTGACATTGAAAAATAGTGGATCCAAATGACTCTTCTTCTTTTACTTTTTGTGTCATCCCTGAAATCATGTTTAAAATTTTAATAAAAAAATACTTTTTATCAATTTCGAAAACAAGAACTCAAACAGACTATAACTTTTTGCAAACAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGAACAACTGATCACCTC</pcr_primer_p1>
		<pcr_primer_p2>GAGTCTGGAAAGAAGCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGAACAACTGATCACCTCGTGGTGGATATCATATTGCAAAAAAAAAAATAAAGTTTCTAACTTTTAAAGAGGAGGCGGGAATGGAGCAGTTGTCTCCTTATCATTTTTTCTAAACCGTTTTGTTCAGTTTCCAACAACACCACAAATTCGACTATTTTTGTTTTTCCATTTTCTTCATTTTTTCATTTCTTTTCCGCTTTCTCATGATCAGAACGGGAAATCGAAATTGCTTCTTTCCAGACTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGAACAACTGATCACCTCGTGGTGGATATCATATTGCAAAAAAAAAAATAAAGTTTCTAACTTTTAAAGAGGAGGCGGGAATGGAGCAGTTGTCTCCTTATCATTTTTTCTAAACCGTTTTGTTCAGTTTCCAACAACACCACAAATTCGACTATTTTTGTTTTTCCATTTTCTTCAWTTTTTCATTTCTTTTCCGCTTTCTCATGATCAGAACGGGAAATCGAAATTGCTTCTTTCCAGACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30800</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>231657</contig_pos>
        <strand></strand>
        <context>agtgtggggc[G/C]ccatgtatta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TATCTCTCATAGGAGCTGAGATAATTGGCTCAAACTGGACAGTGTGGGGC</left_flank>
        <right_flank>CCATGTATTACAGGTTTTACGGTAAGTTGACATTGAAAAATAGTGGATCC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACAACTGATCACCTCGTGGTGGATATCATATTGCAAAAAAAAAAATAAAGTTTCTAACTTTTAAAGAGGAGGCGGGAATGGAGCAGTTGTCTCCTTATCATTTTTTCTAAACCGTTTTGTTCAGTTTCCAACAACACCACAAATTCGACTATTTTTGTTTTTCCATTTTCTTCATTTTTTCATTTCTTTTCCGCTTTCTCATGATCAGAACGGGAAATCGAAATTGCTTCTTTCCAGACTCCAATCTTTACAACATGCAAAACATCGCGATCTGCACAGCACTACTGGTAAGTTGCAACTGTCGTCGTAAAAGCTGTAATGGAACGGTCTCTAACTTTAACTTCGAGCCAGTTCATCTCAATTCCTGTTAAAGATTTTAAAAAGTTGTCAGCTGATAGACTGTTCATCATAATTCTACCAACATTTTATCAGTTGACATAGCTTTCATATCTCTCATAGGAGCTGAGATAATTGGCTCAAACTGGACAGTGTGGGGCGCCATGTATTACAGGTTTTACGGTAAGTTGACATTGAAAAATAGTGGATCCAAATGACTCTTCTTCTTTTACTTTTTGTGTCATCCCTGAAATCATGTTTAAAATTTTAATAAAAAAATACTTTTTATCAATTTCGAAAACAAGAACTCAAACAGACTATAACTTTTTGCAAACAATAGCATGTACCAAGATTTTTGTTTAACTTTTTACGAAAACAGACTGAAACTGAAAAAACATATCAGTGATCAATTTCAGTTTCACTTCCCTCTAGGAGTTTTGAGGGCGAGTTCCGAAAAATAAAAAAATCCGGGTTCATTAAAAAAGGTGCATTTTTTGCCTAGAAAGTTGTTTTTCTCTAGCAAATCACAAGATATTTTCAGTGCCTTCTCTCTTCTGTAAGTTCTCGTTCACTTGAAGATCATCCAAGGTACACGGCTGCTCAGTTGACTGATGAATATAAACACATTCTTGACGGAAGAATAAAACTGGAGGATAGTCACG</canonical>
            <polymorphic>GAACAACTGATCACCTCGTGGTGGATATCATATTGCAAAAAAAAAAATAAAGTTTCTAACTTTTAAAGAGGAGGCGGGAATGGAGCAGTTGTCTCCTTATCATTTTTTCTAAACCGTTTTGTTCAGTTTCCAACAACACCACAAATTCGACTATTTTTGTTTTTCCATTTTCTTCATTTTTTCATTTCTTTTCCGCTTTCTCATGATCAGAACGGGAAATCGAAATTGCTTCTTTCCAGACTCCAATCTTTACAACATGCAAAACATCGCGATCTGCACAGCACTACTGGTAAGTTGCAACTGTCGTCGTAAAAGCTGTAATGGAACGGTCTCTAACTTTAACTTCGAGCCAGTTCATCTCAATTCCTGTTAAAGATTTTAAAAAGTTGTCAGCTGATAGACTGTTCATCATAATTCTACCAACATTTTATCAGTTGACATAGCTTTCATATCTCTCATAGGAGCTGAGATAATTGGCTCAAACTGGACAGTGTGGGGCSCCATGTATTACAGGTTTTACGGTAAGTTGACATTGAAAAATAGTGGATCCAAATGACTCTTCTTCTTTTACTTTTTGTGTCATCCCTGAAATCATGTTTAAAATTTTAATAAAAAAATACTTTTTATCAATTTCGAAAACAAGAACTCAAACAGACTATAACTTTTTGCAAACAATAGCATGTACCAAGATTTTTGTTTAACTTTTTACGAAAACAGACTGAAACTGAAAAAACATATCAGTGATCAATTTCAGTTTCACTTCCCTCTAGGAGTTTTGAGGGCGAGTTCCGAAAAATAAAAAAATCCGGGTTCATTAAAAAAGGTGCATTTTTTGCCTAGAAAGTTGTTTTTCTCTAGCAAATCACAAGATATTTTCAGTGCCTTCTCTCTTCTGTAAGTTCTCGTTCACTTGAAGATCATCCAAGGTACACGGCTGCTCAGTTGACTGATGAATATAAACACATTCTTGACGGAAGAATAAAACTGGAGGATAGTCACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCGCC</site>
                <isoschizomers>
                    <enzyme>BbeI</enzyme>
                    <enzyme>EgeI</enzyme>
                    <enzyme>EheI</enzyme>
                    <enzyme>KasI</enzyme>
                    <enzyme>Mly113I</enzyme>
                    <enzyme>NarI</enzyme>
                    <enzyme>SfoI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCACAGCACTACTGGTAAGTT</pcr_primer_p1>
		<pcr_primer_p2>AAAGTAAAAGAAGAAGAGTCATTTG</pcr_primer_p2>
		<pcr_amplicon_size>299</pcr_amplicon_size>
		<canonical_amplicon>GCACAGCACTACTGGTAAGTTGCAACTGTCGTCGTAAAAGCTGTAATGGAACGGTCTCTAACTTTAACTTCGAGCCAGTTCATCTCAATTCCTGTTAAAGATTTTAAAAAGTTGTCAGCTGATAGACTGTTCATCATAATTCTACCAACATTTTATCAGTTGACATAGCTTTCATATCTCTCATAGGAGCTGAGATAATTGGCTCAAACTGGACAGTGTGGGGCGCCATGTATTACAGGTTTTACGGTAAGTTGACATTGAAAAATAGTGGATCCAAATGACTCTTCTTCTTTTACTTT</canonical_amplicon>
		<polymorphic_amplicon>GCACAGCACTACTGGTAAGTTGCAACTGTCGTCGTAAAAGCTGTAATGGAACGGTCTCTAACTTTAACTTCGAGCCAGTTCATCTCAATTCCTGTTAAAGATTTTAAAAAGTTGTCAGCTGATAGACTGTTCATCATAATTCTACCAACATTTTATCAGTTGACATAGCTTTCATATCTCTCATAGGAGCTGAGATAATTGGCTCAAACTGGACAGTGTGGGGCSCCATGTATTACAGGTTTTACGGTAAGTTGACATTGAAAAATAGTGGATCCAAATGACTCTTCTTCTTTTACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30801</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>231704</contig_pos>
        <strand>+</strand>
        <context>AAAATAGTGG[A/G]TCCAAATGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGCGCCATGTATTACAGGTTTTACGGTAAGTTGACATTGAAAAATAGTGG</left_flank>
        <right_flank>TCCAAATGACTCTTCTTCTTTTACTTTTTGTGTCATCCCTGAAATCATGT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAGTTTCTAACTTTTAAAGAGGAGGCGGGAATGGAGCAGTTGTCTCCTTATCATTTTTTCTAAACCGTTTTGTTCAGTTTCCAACAACACCACAAATTCGACTATTTTTGTTTTTCCATTTTCTTCATTTTTTCATTTCTTTTCCGCTTTCTCATGATCAGAACGGGAAATCGAAATTGCTTCTTTCCAGACTCCAATCTTTACAACATGCAAAACATCGCGATCTGCACAGCACTACTGGTAAGTTGCAACTGTCGTCGTAAAAGCTGTAATGGAACGGTCTCTAACTTTAACTTCGAGCCAGTTCATCTCAATTCCTGTTAAAGATTTTAAAAAGTTGTCAGCTGATAGACTGTTCATCATAATTCTACCAACATTTTATCAGTTGACATAGCTTTCATATCTCTCATAGGAGCTGAGATAATTGGCTCAAACTGGACAGTGTGGGGCGCCATGTATTACAGGTTTTACGGTAAGTTGACATTGAAAAATAGTGGATCCAAATGACTCTTCTTCTTTTACTTTTTGTGTCATCCCTGAAATCATGTTTAAAATTTTAATAAAAAAATACTTTTTATCAATTTCGAAAACAAGAACTCAAACAGACTATAACTTTTTGCAAACAATAGCATGTACCAAGATTTTTGTTTAACTTTTTACGAAAACAGACTGAAACTGAAAAAACATATCAGTGATCAATTTCAGTTTCACTTCCCTCTAGGAGTTTTGAGGGCGAGTTCCGAAAAATAAAAAAATCCGGGTTCATTAAAAAAGGTGCATTTTTTGCCTAGAAAGTTGTTTTTCTCTAGCAAATCACAAGATATTTTCAGTGCCTTCTCTCTTCTGTAAGTTCTCGTTCACTTGAAGATCATCCAAGGTACACGGCTGCTCAGTTGACTGATGAATATAAACACATTCTTGACGGAAGAATAAAACTGGAGGATAGTCACGTCATCTCTCGAGACATCACAGTTGATGACTGTGGGAAAAGAGGGGAC</canonical>
            <polymorphic>TAAAGTTTCTAACTTTTAAAGAGGAGGCGGGAATGGAGCAGTTGTCTCCTTATCATTTTTTCTAAACCGTTTTGTTCAGTTTCCAACAACACCACAAATTCGACTATTTTTGTTTTTCCATTTTCTTCATTTTTTCATTTCTTTTCCGCTTTCTCATGATCAGAACGGGAAATCGAAATTGCTTCTTTCCAGACTCCAATCTTTACAACATGCAAAACATCGCGATCTGCACAGCACTACTGGTAAGTTGCAACTGTCGTCGTAAAAGCTGTAATGGAACGGTCTCTAACTTTAACTTCGAGCCAGTTCATCTCAATTCCTGTTAAAGATTTTAAAAAGTTGTCAGCTGATAGACTGTTCATCATAATTCTACCAACATTTTATCAGTTGACATAGCTTTCATATCTCTCATAGGAGCTGAGATAATTGGCTCAAACTGGACAGTGTGGGGCGCCATGTATTACAGGTTTTACGGTAAGTTGACATTGAAAAATAGTGGRTCCAAATGACTCTTCTTCTTTTACTTTTTGTGTCATCCCTGAAATCATGTTTAAAATTTTAATAAAAAAATACTTTTTATCAATTTCGAAAACAAGAACTCAAACAGACTATAACTTTTTGCAAACAATAGCATGTACCAAGATTTTTGTTTAACTTTTTACGAAAACAGACTGAAACTGAAAAAACATATCAGTGATCAATTTCAGTTTCACTTCCCTCTAGGAGTTTTGAGGGCGAGTTCCGAAAAATAAAAAAATCCGGGTTCATTAAAAAAGGTGCATTTTTTGCCTAGAAAGTTGTTTTTCTCTAGCAAATCACAAGATATTTTCAGTGCCTTCTCTCTTCTGTAAGTTCTCGTTCACTTGAAGATCATCCAAGGTACACGGCTGCTCAGTTGACTGATGAATATAAACACATTCTTGACGGAAGAATAAAACTGGAGGATAGTCACGTCATCTCTCGAGACATCACAGTTGATGACTGTGGGAAAAGAGGGGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGATCC</site>
                <isoschizomers>
                    <enzyme>BamHI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>275 197 173 157 132 66</canonical_bands>
                <polymorphic_bands>472 173 157 132 66</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCACAGCACTACTGGTAAGTT</pcr_primer_p1>
		<pcr_primer_p2>AGTCTGTTTGAGTTCTTGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>382</pcr_amplicon_size>
		<canonical_amplicon>GCACAGCACTACTGGTAAGTTGCAACTGTCGTCGTAAAAGCTGTAATGGAACGGTCTCTAACTTTAACTTCGAGCCAGTTCATCTCAATTCCTGTTAAAGATTTTAAAAAGTTGTCAGCTGATAGACTGTTCATCATAATTCTACCAACATTTTATCAGTTGACATAGCTTTCATATCTCTCATAGGAGCTGAGATAATTGGCTCAAACTGGACAGTGTGGGGCGCCATGTATTACAGGTTTTACGGTAAGTTGACATTGAAAAATAGTGGATCCAAATGACTCTTCTTCTTTTACTTTTTGTGTCATCCCTGAAATCATGTTTAAAATTTTAATAAAAAAATACTTTTTATCAATTTCGAAAACAAGAACTCAAACAGACT</canonical_amplicon>
		<polymorphic_amplicon>GCACAGCACTACTGGTAAGTTGCAACTGTCGTCGTAAAAGCTGTAATGGAACGGTCTCTAACTTTAACTTCGAGCCAGTTCATCTCAATTCCTGTTAAAGATTTTAAAAAGTTGTCAGCTGATAGACTGTTCATCATAATTCTACCAACATTTTATCAGTTGACATAGCTTTCATATCTCTCATAGGAGCTGAGATAATTGGCTCAAACTGGACAGTGTGGGGCGCCATGTATTACAGGTTTTACGGTAAGTTGACATTGAAAAATAGTGGRTCCAAATGACTCTTCTTCTTTTACTTTTTGTGTCATCCCTGAAATCATGTTTAAAATTTTAATAAAAAAATACTTTTTATCAATTTCGAAAACAAGAACTCAAACAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30802</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>265519</contig_pos>
        <strand></strand>
        <context>atttcgcctt[C/A]sgAGAAGCKA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATTCCGAATTCCGAGGAAATTATTTTATGATGGTTTCCATATTTCGCCTT</left_flank>
        <right_flank>CGAGAAGCTAAATTGTAGTGCCGCGTAACACTGCTACAAACCCATTTTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCTTCGATTCCATTTGAGTTCGTAGCGGAAAAAGAAAATTGAGATGGGAAAAAGGAAACGAGCTGTCACCACGGAGTGACAGATGTTCGTCCCCAAATCCATAAATAGGGGTGGGCAATGAAAAAAGAAGTCGTTTCGTGATGGGGACGGGAAATGTTTTCGTGAATGGCAAATGGAAGGTCAGTTTATTGGTTTTGGTCGTGGTGAAAAGAAGAGAACCGAATACTGGATGAATGGTTCCATTACTCCCTGTATCATCTTTTATGAGAAACAGAGATGTCCGGATTCTGAATTCCGTGTTTTTTTATTCCGGATTCCTAAAAAATGTGGGATTCCGAGAAAATTATTTTCGTCGGATTTTCAGCGAATGTTTTAATCTGCAAGAATTCCTGTTACATTCACCGAATTCCGCGTTTTCTTTCGTTCCGCGGAACGTTCCGGATTACGTATTCCGAATTCCGAGGAAATTATTTTATGATGGTTTCCATATTTCGCCTTCCGAGAAGCTAAATTGTAGTGCCGCGTAACACTGCTACAAACCCATTTTCATTGAGCTTTGAGACCATTTTTATTAATTTGTCATTTTCTCAGTTCTTTGTTTCTCTGATGTCTCTCTGACTTTCTCATCACCCGCAAATAAACTTTTTTTTCGAACAACTCTCTTTTTTTTCTTAAGAGAGTTGCGCATCTCAAAACGTGAAACGGACAATGTTTGACAATGAGTCGAAAGGCGGCAAAATGAACAGAAATAGAATATTTGGGTTACTTGATTACAGATTTTTCGTTTATTTAAAGAAACAATGACTGGTTTCAAAAGAGGTTTCTACTCTCATTTTGGAAAAAAAGGTTGCACTTGGAAACACAACAAGTTTCAAATGAGAAACTTGAGAATACCTGAGATTCCTCAAGTTTCTACAGTAAGACTTCTAGAATTTGAGTTCAAGTATAGAAACTCATTCCCACGGTGCGAAAACATCTCTGTTATGTTGTCAAAAAATA</canonical>
            <polymorphic>CGCTTCGATTCCATTTGAGTTCGTAGCGGAAAAAGAAAATTGAGATGGGAAAAAGGAAACGAGCTGTCACCACGGAGTGACAGATGTTCGTCCCCAAATCCATAAATAGGGGTGGGCAATGAAAAAAGAAGTCGTTTCGTGATGGGGACGGGAAATGTTTTCGTGAATGGCAAATGGAAGGTCAGTTTATTGGTTTTGGTCGTGGTGAAAAGAAGAGAACCGAATACTGGATGAATGGTTCCATTACTCCCTGTATCATCTTTTATGAGAAACAGAGATGTCCGGATTCTGAATTCCGTGTTTTTTTATTCCGGATTCCTAAAAAATGTGGGATTCCGAGAAAATTATTTTCGTCGGATTTTCAGCGAATGTTTTAATCTGCAAGAATTCCTGTTACATTCACCGAATTCCGCGTTTTCTTTCGTTCCGCGGAACGTTCCGGATTACGTATTCCGAATTCCGAGGAAATTATTTTATGATGGTTTCCATATTTCGCCTTMCGAGAAGCTAAATTGTAGTGCCGCGTAACACTGCTACAAACCCATTTTCATTGAGCTTTGAGACCATTTTTATTAATTTGTCATTTTCTCAGTTCTTTGTTTCTCTGATGTCTCTCTGACTTTCTCATCACCCGCAAATAAACTTTTTTTTCGAACAACTCTCTTTTTTTTCTTAAGAGAGTTGCGCATCTCAAAACGTGAAACGGACAATGTTTGACAATGAGTCGAAAGGCGGCAAAATGAACAGAAATAGAATATTTGGGTTACTTGATTACAGATTTTTCGTTTATTTAAAGAAACAATGACTGGTTTCAAAAGAGGTTTCTACTCTCATTTTGGAAAAAAAGGTTGCACTTGGAAACACAACAAGTTTCAAATGAGAAACTTGAGAATACCTGAGATTCCTCAAGTTTCTACAGTAAGACTTCTAGAATTTGAGTTCAAGTATAGAAACTCATTCCCACGGTGCGAAAACATCTCTGTTATGTTGTCAAAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>383 290 105 98 47 40 19 11 7</canonical_bands>
                <polymorphic_bands>383 290 145 98 47 19 11 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCTGTATCATCTTTTATGAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATGAAAATGGGTTTGTAGCA</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>CCCTGTATCATCTTTTATGAGAAACAGAGATGTCCGGATTCTGAATTCCGTGTTTTTTTATTCCGGATTCCTAAAAAATGTGGGATTCCGAGAAAATTATTTTCGTCGGATTTTCAGCGAATGTTTTAATCTGCAAGAATTCCTGTTACATTCACCGAATTCCGCGTTTTCTTTCGTTCCGCGGAACGTTCCGGATTACGTATTCCGAATTCCGAGGAAATTATTTTATGATGGTTTCCATATTTCGCCTTCCGAGAAGCTAAATTGTAGTGCCGCGTAACACTGCTACAAACCCATTTTCAT</canonical_amplicon>
		<polymorphic_amplicon>CCCTGTATCATCTTTTATGAGAAACAGAGATGTCCGGATTCTGAATTCCGTGTTTTTTTATTCCGGATTCCTAAAAAATGTGGGATTCCGAGAAAATTATTTTCGTCGGATTTTCAGCGAATGTTTTAATCTGCAAGAATTCCTGTTACATTCACCGAATTCCGCGTTTTCTTTCGTTCCGCGGAACGTTCCGGATTACGTATTCCGAATTCCGAGGAAATTATTTTATGATGGTTTCCATATTTCGCCTTMCGAGAAGCTAAATTGTAGTGCCGCGTAACACTGCTACAAACCCATTTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30803</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>265520</contig_pos>
        <strand></strand>
        <context>tttcgccttm[C/G]gAGAAGCKAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCCGAATTCCGAGGAAATTATTTTATGATGGTTTCCATATTTCGCCTTC</left_flank>
        <right_flank>GAGAAGCTAAATTGTAGTGCCGCGTAACACTGCTACAAACCCATTTTCAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTCGATTCCATTTGAGTTCGTAGCGGAAAAAGAAAATTGAGATGGGAAAAAGGAAACGAGCTGTCACCACGGAGTGACAGATGTTCGTCCCCAAATCCATAAATAGGGGTGGGCAATGAAAAAAGAAGTCGTTTCGTGATGGGGACGGGAAATGTTTTCGTGAATGGCAAATGGAAGGTCAGTTTATTGGTTTTGGTCGTGGTGAAAAGAAGAGAACCGAATACTGGATGAATGGTTCCATTACTCCCTGTATCATCTTTTATGAGAAACAGAGATGTCCGGATTCTGAATTCCGTGTTTTTTTATTCCGGATTCCTAAAAAATGTGGGATTCCGAGAAAATTATTTTCGTCGGATTTTCAGCGAATGTTTTAATCTGCAAGAATTCCTGTTACATTCACCGAATTCCGCGTTTTCTTTCGTTCCGCGGAACGTTCCGGATTACGTATTCCGAATTCCGAGGAAATTATTTTATGATGGTTTCCATATTTCGCCTTCCGAGAAGCTAAATTGTAGTGCCGCGTAACACTGCTACAAACCCATTTTCATTGAGCTTTGAGACCATTTTTATTAATTTGTCATTTTCTCAGTTCTTTGTTTCTCTGATGTCTCTCTGACTTTCTCATCACCCGCAAATAAACTTTTTTTTCGAACAACTCTCTTTTTTTTCTTAAGAGAGTTGCGCATCTCAAAACGTGAAACGGACAATGTTTGACAATGAGTCGAAAGGCGGCAAAATGAACAGAAATAGAATATTTGGGTTACTTGATTACAGATTTTTCGTTTATTTAAAGAAACAATGACTGGTTTCAAAAGAGGTTTCTACTCTCATTTTGGAAAAAAAGGTTGCACTTGGAAACACAACAAGTTTCAAATGAGAAACTTGAGAATACCTGAGATTCCTCAAGTTTCTACAGTAAGACTTCTAGAATTTGAGTTCAAGTATAGAAACTCATTCCCACGGTGCGAAAACATCTCTGTTATGTTGTCAAAAAATAG</canonical>
            <polymorphic>GCTTCGATTCCATTTGAGTTCGTAGCGGAAAAAGAAAATTGAGATGGGAAAAAGGAAACGAGCTGTCACCACGGAGTGACAGATGTTCGTCCCCAAATCCATAAATAGGGGTGGGCAATGAAAAAAGAAGTCGTTTCGTGATGGGGACGGGAAATGTTTTCGTGAATGGCAAATGGAAGGTCAGTTTATTGGTTTTGGTCGTGGTGAAAAGAAGAGAACCGAATACTGGATGAATGGTTCCATTACTCCCTGTATCATCTTTTATGAGAAACAGAGATGTCCGGATTCTGAATTCCGTGTTTTTTTATTCCGGATTCCTAAAAAATGTGGGATTCCGAGAAAATTATTTTCGTCGGATTTTCAGCGAATGTTTTAATCTGCAAGAATTCCTGTTACATTCACCGAATTCCGCGTTTTCTTTCGTTCCGCGGAACGTTCCGGATTACGTATTCCGAATTCCGAGGAAATTATTTTATGATGGTTTCCATATTTCGCCTTCSGAGAAGCTAAATTGTAGTGCCGCGTAACACTGCTACAAACCCATTTTCATTGAGCTTTGAGACCATTTTTATTAATTTGTCATTTTCTCAGTTCTTTGTTTCTCTGATGTCTCTCTGACTTTCTCATCACCCGCAAATAAACTTTTTTTTCGAACAACTCTCTTTTTTTTCTTAAGAGAGTTGCGCATCTCAAAACGTGAAACGGACAATGTTTGACAATGAGTCGAAAGGCGGCAAAATGAACAGAAATAGAATATTTGGGTTACTTGATTACAGATTTTTCGTTTATTTAAAGAAACAATGACTGGTTTCAAAAGAGGTTTCTACTCTCATTTTGGAAAAAAAGGTTGCACTTGGAAACACAACAAGTTTCAAATGAGAAACTTGAGAATACCTGAGATTCCTCAAGTTTCTACAGTAAGACTTCTAGAATTTGAGTTCAAGTATAGAAACTCATTCCCACGGTGCGAAAACATCTCTGTTATGTTGTCAAAAAATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCTGTATCATCTTTTATGAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCAATGAAAATGGGTTTGTAG</pcr_primer_p2>
		<pcr_amplicon_size>306</pcr_amplicon_size>
		<canonical_amplicon>CCCTGTATCATCTTTTATGAGAAACAGAGATGTCCGGATTCTGAATTCCGTGTTTTTTTATTCCGGATTCCTAAAAAATGTGGGATTCCGAGAAAATTATTTTCGTCGGATTTTCAGCGAATGTTTTAATCTGCAAGAATTCCTGTTACATTCACCGAATTCCGCGTTTTCTTTCGTTCCGCGGAACGTTCCGGATTACGTATTCCGAATTCCGAGGAAATTATTTTATGATGGTTTCCATATTTCGCCTTCCGAGAAGCTAAATTGTAGTGCCGCGTAACACTGCTACAAACCCATTTTCATTGA</canonical_amplicon>
		<polymorphic_amplicon>CCCTGTATCATCTTTTATGAGAAACAGAGATGTCCGGATTCTGAATTCCGTGTTTTTTTATTCCGGATTCCTAAAAAATGTGGGATTCCGAGAAAATTATTTTCGTCGGATTTTCAGCGAATGTTTTAATCTGCAAGAATTCCTGTTACATTCACCGAATTCCGCGTTTTCTTTCGTTCCGCGGAACGTTCCGGATTACGTATTCCGAATTCCGAGGAAATTATTTTATGATGGTTTCCATATTTCGCCTTCSGAGAAGCTAAATTGTAGTGCCGCGTAACACTGCTACAAACCCATTTTCATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30804</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>265528</contig_pos>
        <strand>+</strand>
        <context>tmsgAGAAGC[G/T]AAATTGTAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCCGAGGAAATTATTTTATGATGGTTTCCATATTTCGCCTTCCGAGAAGC</left_flank>
        <right_flank>AAATTGTAGTGCCGCGTAACACTGCTACAAACCCATTTTCATTGAGCTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCATTTGAGTTCGTAGCGGAAAAAGAAAATTGAGATGGGAAAAAGGAAACGAGCTGTCACCACGGAGTGACAGATGTTCGTCCCCAAATCCATAAATAGGGGTGGGCAATGAAAAAAGAAGTCGTTTCGTGATGGGGACGGGAAATGTTTTCGTGAATGGCAAATGGAAGGTCAGTTTATTGGTTTTGGTCGTGGTGAAAAGAAGAGAACCGAATACTGGATGAATGGTTCCATTACTCCCTGTATCATCTTTTATGAGAAACAGAGATGTCCGGATTCTGAATTCCGTGTTTTTTTATTCCGGATTCCTAAAAAATGTGGGATTCCGAGAAAATTATTTTCGTCGGATTTTCAGCGAATGTTTTAATCTGCAAGAATTCCTGTTACATTCACCGAATTCCGCGTTTTCTTTCGTTCCGCGGAACGTTCCGGATTACGTATTCCGAATTCCGAGGAAATTATTTTATGATGGTTTCCATATTTCGCCTTCCGAGAAGCTAAATTGTAGTGCCGCGTAACACTGCTACAAACCCATTTTCATTGAGCTTTGAGACCATTTTTATTAATTTGTCATTTTCTCAGTTCTTTGTTTCTCTGATGTCTCTCTGACTTTCTCATCACCCGCAAATAAACTTTTTTTTCGAACAACTCTCTTTTTTTTCTTAAGAGAGTTGCGCATCTCAAAACGTGAAACGGACAATGTTTGACAATGAGTCGAAAGGCGGCAAAATGAACAGAAATAGAATATTTGGGTTACTTGATTACAGATTTTTCGTTTATTTAAAGAAACAATGACTGGTTTCAAAAGAGGTTTCTACTCTCATTTTGGAAAAAAAGGTTGCACTTGGAAACACAACAAGTTTCAAATGAGAAACTTGAGAATACCTGAGATTCCTCAAGTTTCTACAGTAAGACTTCTAGAATTTGAGTTCAAGTATAGAAACTCATTCCCACGGTGCGAAAACATCTCTGTTATGTTGTCAAAAAATAGGTGGAATC</canonical>
            <polymorphic>TCCATTTGAGTTCGTAGCGGAAAAAGAAAATTGAGATGGGAAAAAGGAAACGAGCTGTCACCACGGAGTGACAGATGTTCGTCCCCAAATCCATAAATAGGGGTGGGCAATGAAAAAAGAAGTCGTTTCGTGATGGGGACGGGAAATGTTTTCGTGAATGGCAAATGGAAGGTCAGTTTATTGGTTTTGGTCGTGGTGAAAAGAAGAGAACCGAATACTGGATGAATGGTTCCATTACTCCCTGTATCATCTTTTATGAGAAACAGAGATGTCCGGATTCTGAATTCCGTGTTTTTTTATTCCGGATTCCTAAAAAATGTGGGATTCCGAGAAAATTATTTTCGTCGGATTTTCAGCGAATGTTTTAATCTGCAAGAATTCCTGTTACATTCACCGAATTCCGCGTTTTCTTTCGTTCCGCGGAACGTTCCGGATTACGTATTCCGAATTCCGAGGAAATTATTTTATGATGGTTTCCATATTTCGCCTTCCGAGAAGCKAAATTGTAGTGCCGCGTAACACTGCTACAAACCCATTTTCATTGAGCTTTGAGACCATTTTTATTAATTTGTCATTTTCTCAGTTCTTTGTTTCTCTGATGTCTCTCTGACTTTCTCATCACCCGCAAATAAACTTTTTTTTCGAACAACTCTCTTTTTTTTCTTAAGAGAGTTGCGCATCTCAAAACGTGAAACGGACAATGTTTGACAATGAGTCGAAAGGCGGCAAAATGAACAGAAATAGAATATTTGGGTTACTTGATTACAGATTTTTCGTTTATTTAAAGAAACAATGACTGGTTTCAAAAGAGGTTTCTACTCTCATTTTGGAAAAAAAGGTTGCACTTGGAAACACAACAAGTTTCAAATGAGAAACTTGAGAATACCTGAGATTCCTCAAGTTTCTACAGTAAGACTTCTAGAATTTGAGTTCAAGTATAGAAACTCATTCCCACGGTGCGAAAACATCTCTGTTATGTTGTCAAAAAATAGGTGGAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>454 444 54 48</canonical_bands>
                <polymorphic_bands>492 454 54</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>454 444 54 48</canonical_bands>
                <polymorphic_bands>492 454 54</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCTGTATCATCTTTTATGAGAA</pcr_primer_p1>
		<pcr_primer_p2>GGTCTCAAAGCTCAATGAAA</pcr_primer_p2>
		<pcr_amplicon_size>317</pcr_amplicon_size>
		<canonical_amplicon>CCCTGTATCATCTTTTATGAGAAACAGAGATGTCCGGATTCTGAATTCCGTGTTTTTTTATTCCGGATTCCTAAAAAATGTGGGATTCCGAGAAAATTATTTTCGTCGGATTTTCAGCGAATGTTTTAATCTGCAAGAATTCCTGTTACATTCACCGAATTCCGCGTTTTCTTTCGTTCCGCGGAACGTTCCGGATTACGTATTCCGAATTCCGAGGAAATTATTTTATGATGGTTTCCATATTTCGCCTTCCGAGAAGCTAAATTGTAGTGCCGCGTAACACTGCTACAAACCCATTTTCATTGAGCTTTGAGACC</canonical_amplicon>
		<polymorphic_amplicon>CCCTGTATCATCTTTTATGAGAAACAGAGATGTCCGGATTCTGAATTCCGTGTTTTTTTATTCCGGATTCCTAAAAAATGTGGGATTCCGAGAAAATTATTTTCGTCGGATTTTCAGCGAATGTTTTAATCTGCAAGAATTCCTGTTACATTCACCGAATTCCGCGTTTTCTTTCGTTCCGCGGAACGTTCCGGATTACGTATTCCGAATTCCGAGGAAATTATTTTATGATGGTTTCCATATTTCGCCTTCCGAGAAGCKAAATTGTAGTGCCGCGTAACACTGCTACAAACCCATTTTCATTGAGCTTTGAGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30805</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>325892</contig_pos>
        <strand>+</strand>
        <context>CCCATAATTC[C/T]TAGCAAGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATGATCTGTTGTTCGTGACTCCAATTTCCTCTTCATATTCCCATAATTC</left_flank>
        <right_flank>TAGCAAGAAACGCATTCTGCCACGTATATTTCGTTATAGCAGTTGCCCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTGATGAGTTATCATGAAGCCCTATCACACGGATTTTCATATGATCAGAAGAATGTATTCTAAGAAGTCATACAAAAAGTTTCAACCGGAAACGAAATATTCTATAAATAAAAATGAAATTATTTTATATATTTGAAACTCCATACAGGGTGGCGCATAATCACCCGGAGTAAAGTTTGTATTATCACAACGGCTGGACTTAAGGAACCTCTTTGAAAATTCCAGTAGCTTTGAATCAAACGTAAAAATATACTTTTTTCAATTTTTGTGCTTCCAAGATTCTTATGTCTGAAGTTATACCCTTATTTCAGTCTGGTGCGCCATCCTGGTAAAATTTTAAAAAAGTTTTTATATATTTGAAACCCAAATTGTATGTAATTAGATGAAACTGTGTCACGGGAGACATATCGAGATCATGTTACGGTTCTTTTTCAGCAATTTCAGACTCATGATCTGTTGTTCGTGACTCCAATTTCCTCTTCATATTCCCATAATTCCTAGCAAGAAACGCATTCTGCCACGTATATTTCGTTATAGCAGTTGCCCAGAGACCGGTGAACCATAGATTTTCTCCATAAAGATCTGAAAATCTTTAAATTAGGAAAAATCTTCATCAGATGATAGCTGACTTGTGAATTGAATTTGCTGGATACCTGCAATAACGAAGCATGCTACAAAACATAATAGAGCAAGAAATCCAAGAATTACATCTGAAGAATGAATTATGGTGATTTGAACCTGGGAAAATTCCTCCGTACCGATAATCAAAATACATTGGAAAGTCCCATACTCCCAATTGGTAATTTTGCATTTCTTCTCTGCTAAGAACATTTGTAATGTGTGACATGCTACTAATGTCACCATAGAGGTTAGAATTAGTGCTGACCAATTGTGAAATTGTATTGCATATGAAAGAATATTCGAGATTCCAATCAAAATATCCACTATTGTAAGAGCAATCCTGGTGTTTATATGGCAGAGAAGTGTACAACATTTGG</canonical>
            <polymorphic>CAGTGATGAGTTATCATGAAGCCCTATCACACGGATTTTCATATGATCAGAAGAATGTATTCTAAGAAGTCATACAAAAAGTTTCAACCGGAAACGAAATATTCTATAAATAAAAATGAAATTATTTTATATATTTGAAACTCCATACAGGGTGGCGCATAATCACCCGGAGTAAAGTTTGTATTATCACAACGGCTGGACTTAAGGAACCTCTTTGAAAATTCCAGTAGCTTTGAATCAAACGTAAAAATATACTTTTTTCAATTTTTGTGCTTCCAAGATTCTTATGTCTGAAGTTATACCCTTATTTCAGTCTGGTGCGCCATCCTGGTAAAATTTTAAAAAAGTTTTTATATATTTGAAACCCAAATTGTATGTAATTAGATGAAACTGTGTCACGGGAGACATATCGAGATCATGTTACGGTTCTTTTTCAGCAATTTCAGACTCATGATCTGTTGTTCGTGACTCCAATTTCCTCTTCATATTCCCATAATTCYTAGCAAGAAACGCATTCTGCCACGTATATTTCGTTATAGCAGTTGCCCAGAGACCGGTGAACCATAGATTTTCTCCATAAAGATCTGAAAATCTTTAAATTAGGAAAAATCTTCATCAGATGATAGCTGACTTGTGAATTGAATTTGCTGGATACCTGCAATAACGAAGCATGCTACAAAACATAATAGAGCAAGAAATCCAAGAATTACATCTGAAGAATGAATTATGGTGATTTGAACCTGGGAAAATTCCTCCGTACCGATAATCAAAATACATTGGAAAGTCCCATACTCCCAATTGGTAATTTTGCATTTCTTCTCTGCTAAGAACATTTGTAATGTGTGACATGCTACTAATGTCACCATAGAGGTTAGAATTAGTGCTGACCAATTGTGAAATTGTATTGCATATGAAAGAATATTCGAGATTCCAATCAAAATATCCACTATTGTAAGAGCAATCCTGGTGTTTATATGGCAGAGAAGTGTACAACATTTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGCAATTTCAGACTCAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTAGCATGCTTCGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGCAATTTCAGACTCATGATCTGTTGTTCGTGACTCCAATTTCCTCTTCATATTCCCATAATTCCTAGCAAGAAACGCATTCTGCCACGTATATTTCGTTATAGCAGTTGCCCAGAGACCGGTGAACCATAGATTTTCTCCATAAAGATCTGAAAATCTTTAAATTAGGAAAAATCTTCATCAGATGATAGCTGACTTGTGAATTGAATTTGCTGGATACCTGCAATAACGAAGCATGCTACAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGCAATTTCAGACTCATGATCTGTTGTTCGTGACTCCAATTTCCTCTTCATATTCCCATAATTCYTAGCAAGAAACGCATTCTGCCACGTATATTTCGTTATAGCAGTTGCCCAGAGACCGGTGAACCATAGATTTTCTCCATAAAGATCTGAAAATCTTTAAATTAGGAAAAATCTTCATCAGATGATAGCTGACTTGTGAATTGAATTTGCTGGATACCTGCAATAACGAAGCATGCTACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30806</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>326391</contig_pos>
        <strand>+</strand>
        <context>TACAACATTT[C/G]GCAGAGGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTGTAAGAGCAATCCTGGTGTTTATATGGCAGAGAAGTGTACAACATTT</left_flank>
        <right_flank>GCAGAGGAAGAATTAGAAGGCATGAATTCAGATAATATGTAAATTTTCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGCAAGAAACGCATTCTGCCACGTATATTTCGTTATAGCAGTTGCCCAGAGACCGGTGAACCATAGATTTTCTCCATAAAGATCTGAAAATCTTTAAATTAGGAAAAATCTTCATCAGATGATAGCTGACTTGTGAATTGAATTTGCTGGATACCTGCAATAACGAAGCATGCTACAAAACATAATAGAGCAAGAAATCCAAGAATTACATCTGAAGAATGAATTATGGTGATTTGAACCTGGGAAAATTCCTCCGTACCGATAATCAAAATACATTGGAAAGTCCCATACTCCCAATTGGTAATTTTGCATTTCTTCTCTGCTAAGAACATTTGTAATGTGTGACATGCTACTAATGTCACCATAGAGGTTAGAATTAGTGCTGACCAATTGTGAAATTGTATTGCATATGAAAGAATATTCGAGATTCCAATCAAAATATCCACTATTGTAAGAGCAATCCTGGTGTTTATATGGCAGAGAAGTGTACAACATTTGGCAGAGGAAGAATTAGAAGGCATGAATTCAGATAATATGTAAATTTTCCATTTCACTATTTAATCATATTGATTTTACCGTATTCCCTCTAGAAGCCCACTCAAACCGTTAATTTTGTGCTCAATTATCTTGATTCTTGTGAAAGATATCAAAGTTTTGTCAACTGATAAAGTATTTATTATAAAATCACCAATACTTTCTCAGTAGACAAAATTTTGACATCTTTCACTGGAATCGAGATAATTGAGCTCAAAGTAGATGGTTTGAGTAGGCTCTGAACAGGGGAAGTACGGTATTTCTTATGCTCTATCATATTTGATATTGCCCTTCATATAGATTATGAAAGTATTTTTCGATAGCCTCTGATTGTTCTTTTGTATCTTCGAAATGTGTTTTGCAAGTTTTCGGTCCTTTTCAAGTCATGTTTGTCTTTGAATTCTCTACGTTCCCAGCTGATCTTTGTGTCAATATCGAAAACGTAAAATCTGCACTGTTCATAG</canonical>
            <polymorphic>CTAGCAAGAAACGCATTCTGCCACGTATATTTCGTTATAGCAGTTGCCCAGAGACCGGTGAACCATAGATTTTCTCCATAAAGATCTGAAAATCTTTAAATTAGGAAAAATCTTCATCAGATGATAGCTGACTTGTGAATTGAATTTGCTGGATACCTGCAATAACGAAGCATGCTACAAAACATAATAGAGCAAGAAATCCAAGAATTACATCTGAAGAATGAATTATGGTGATTTGAACCTGGGAAAATTCCTCCGTACCGATAATCAAAATACATTGGAAAGTCCCATACTCCCAATTGGTAATTTTGCATTTCTTCTCTGCTAAGAACATTTGTAATGTGTGACATGCTACTAATGTCACCATAGAGGTTAGAATTAGTGCTGACCAATTGTGAAATTGTATTGCATATGAAAGAATATTCGAGATTCCAATCAAAATATCCACTATTGTAAGAGCAATCCTGGTGTTTATATGGCAGAGAAGTGTACAACATTTSGCAGAGGAAGAATTAGAAGGCATGAATTCAGATAATATGTAAATTTTCCATTTCACTATTTAATCATATTGATTTTACCGTATTCCCTCTAGAAGCCCACTCAAACCGTTAATTTTGTGCTCAATTATCTTGATTCTTGTGAAAGATATCAAAGTTTTGTCAACTGATAAAGTATTTATTATAAAATCACCAATACTTTCTCAGTAGACAAAATTTTGACATCTTTCACTGGAATCGAGATAATTGAGCTCAAAGTAGATGGTTTGAGTAGGCTCTGAACAGGGGAAGTACGGTATTTCTTATGCTCTATCATATTTGATATTGCCCTTCATATAGATTATGAAAGTATTTTTCGATAGCCTCTGATTGTTCTTTTGTATCTTCGAAATGTGTTTTGCAAGTTTTCGGTCCTTTTCAAGTCATGTTTGTCTTTGAATTCTCTACGTTCCCAGCTGATCTTTGTGTCAATATCGAAAACGTAAAATCTGCACTGTTCATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGCTACTAATGTCACCATAGA</pcr_primer_p1>
		<pcr_primer_p2>GAGGGAATACGGTAAAATCAAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CATGCTACTAATGTCACCATAGAGGTTAGAATTAGTGCTGACCAATTGTGAAATTGTATTGCATATGAAAGAATATTCGAGATTCCAATCAAAATATCCACTATTGTAAGAGCAATCCTGGTGTTTATATGGCAGAGAAGTGTACAACATTTGGCAGAGGAAGAATTAGAAGGCATGAATTCAGATAATATGTAAATTTTCCATTTCACTATTTAATCATATTGATTTTACCGTATTCCCTC</canonical_amplicon>
		<polymorphic_amplicon>CATGCTACTAATGTCACCATAGAGGTTAGAATTAGTGCTGACCAATTGTGAAATTGTATTGCATATGAAAGAATATTCGAGATTCCAATCAAAATATCCACTATTGTAAGAGCAATCCTGGTGTTTATATGGCAGAGAAGTGTACAACATTTSGCAGAGGAAGAATTAGAAGGCATGAATTCAGATAATATGTAAATTTTCCATTTCACTATTTAATCATATTGATTTTACCGTATTCCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30807</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>336220</contig_pos>
        <strand>+</strand>
        <context>TTTCGTGATC[A/G]AAGTATTACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGTGACTCTCATCTCTCCCCTTTTCTGCCTTTTTTAGTTTTTCGTGATC</left_flank>
        <right_flank>AAGTATTACAGCAGTATTTAATACCACTCTGACATTTCACACTGAAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTCTTTCCATTTCCTATTACGTACTAAGACTTTGCTTTTTCACTTCCCTGAAATCCAGAAGCAAGAAAACAACTAGGTTTAACATTGAAGATAACATTTTGTTTACATTGATAATTTTGTACCAGTTTTGTGATGTATGATTCATAGAATCATTGGTCGCATTGCATTTGTATAAACCACTATCCCAACAAATACCAATTGGAAATGTACCGTCTAAAAATGTCATTTTTCATTTCTTGTTTTCTCTTTCAGAAAACTCAATTAAAACGAGCGTCCATGAATTATTGCTCAGAGAACCCGAATGCTTCTCTTCCCTTTCTTTCTCTTGCTCCATCCTAACAATAGATATAAATTGAGGTCGATTTTTGCTCTTCGTTGTCTTGTTGCTTCTCACAACACAAGAGTAAATTGAGTATTCCTTCCTCAGAGAATCTCCTGTGAGAGTATTCGTGACTCTCATCTCTCCCCTTTTCTGCCTTTTTTAGTTTTTCGTGATCAAAGTATTACAGCAGTATTTAATACCACTCTGACATTTCACACTGAAATTTTCAACGTGGTTTCGGAATAGAATTTGCATAATTCTACCCCTTGAAAGCAACAGAGTGTGAGAAATCTGATAGGTAGCCACACTCTTCATCTTTCGAAATTCAGCATTTTTGGTTTAAAAATATTCACATTTTATCTGCGGTTCCACATGATTAGAACTATTTCTGTTTGCCAATGCTTTCGATTTTTGTGTTTCTATTGACAGGCTCCCATCCCATCATTTTTCGGTGTCTGCTACTGCAGCCACTGACAGATGTGTCACTTTCGAACCCTCATTGCAATTTTTGCCTTCCTATAGAATTGATTTTTGTTATTTTGAATTCGAATTTAAATAGCAAAAATTTATCCTTTAAGCCAAGTAGGATAATTTTTCTAAATTCGAAATTTTAAAATCGCATTCCATGTTCGAAACAGAAATTCTGACTCAGAATACTATTTTACAAAACCGTAGT</canonical>
            <polymorphic>CTTTCTTTCCATTTCCTATTACGTACTAAGACTTTGCTTTTTCACTTCCCTGAAATCCAGAAGCAAGAAAACAACTAGGTTTAACATTGAAGATAACATTTTGTTTACATTGATAATTTTGTACCAGTTTTGTGATGTATGATTCATAGAATCATTGGTCGCATTGCATTTGTATAAACCACTATCCCAACAAATACCAATTGGAAATGTACCGTCTAAAAATGTCATTTTTCATTTCTTGTTTTCTCTTTCAGAAAACTCAATTAAAACGAGCGTCCATGAATTATTGCTCAGAGAACCCGAATGCTTCTCTTCCCTTTCTTTCTCTTGCTCCATCCTAACAATAGATATAAATTGAGGTCGATTTTTGCTCTTCGTTGTCTTGTTGCTTCTCACAACACAAGAGTAAATTGAGTATTCCTTCCTCAGAGAATCTCCTGTGAGAGTATTCGTGACTCTCATCTCTCCCCTTTTCTGCCTTTTTTAGTTTTTCGTGATCRAAGTATTACAGCAGTATTTAATACCACTCTGACATTTCACACTGAAATTTTCAACGTGGTTTCGGAATAGAATTTGCATAATTCTACCCCTTGAAAGCAACAGAGTGTGAGAAATCTGATAGGTAGCCACACTCTTCATCTTTCGAAATTCAGCATTTTTGGTTTAAAAATATTCACATTTTATCTGCGGTTCCACATGATTAGAACTATTTCTGTTTGCCAATGCTTTCGATTTTTGTGTTTCTATTGACAGGCTCCCATCCCATCATTTTTCGGTGTCTGCTACTGCAGCCACTGACAGATGTGTCACTTTCGAACCCTCATTGCAATTTTTGCCTTCCTATAGAATTGATTTTTGTTATTTTGAATTCGAATTTAAATAGCAAAAATTTATCCTTTAAGCCAAGTAGGATAATTTTTCTAAATTCGAAATTTTAAAATCGCATTCCATGTTCGAAACAGAAATTCTGACTCAGAATACTATTTTACAAAACCGTAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCACAACACAAGAGTAAATTG</pcr_primer_p1>
		<pcr_primer_p2>ATGAAGAGTGTGGCTACCTATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTCACAACACAAGAGTAAATTGAGTATTCCTTCCTCAGAGAATCTCCTGTGAGAGTATTCGTGACTCTCATCTCTCCCCTTTTCTGCCTTTTTTAGTTTTTCGTGATCAAAGTATTACAGCAGTATTTAATACCACTCTGACATTTCACACTGAAATTTTCAACGTGGTTTCGGAATAGAATTTGCATAATTCTACCCCTTGAAAGCAACAGAGTGTGAGAAATCTGATAGGTAGCCACACTCTTCAT</canonical_amplicon>
		<polymorphic_amplicon>TCTCACAACACAAGAGTAAATTGAGTATTCCTTCCTCAGAGAATCTCCTGTGAGAGTATTCGTGACTCTCATCTCTCCCCTTTTCTGCCTTTTTTAGTTTTTCGTGATCRAAGTATTACAGCAGTATTTAATACCACTCTGACATTTCACACTGAAATTTTCAACGTGGTTTCGGAATAGAATTTGCATAATTCTACCCCTTGAAAGCAACAGAGTGTGAGAAATCTGATAGGTAGCCACACTCTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30808</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>341606</contig_pos>
        <strand>+</strand>
        <context>GTATCATCAG[C/T]TGAAGGACCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCTTGAAGTGCACAACAATCAATTGCTCCTTTCGGAAGTGTATCATCAG</left_flank>
        <right_flank>TGAAGGACCACATTCCAGCTCAAGATGATCTGATGCAATTGGACAGAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCCATTCTATTTGCACAATTCTGCTCTTAGACAACTTCAATCGAAACTTCGAGAGAAGAGAGAATCTATGGCCGAATGGAAAGAACGATTCAAACGACAGGACACATTCTATGGATCACACCTTTCACTGAGAGAAGCTGATGGTCGGACTAGTCGGAAGGTGAGTAAAAGTCCAAAGATGCTGAAACAAAAAGAAGTTTTCAGAAATCAACAGTGCCAAACATGAATTCTACGAGTGTAGTTGGACGAAATCTGAATGACGGAATCCTCGGTGAAGACTACTTCTCCAACATGAATCCACGTGCAATGAGAAGAATTATGAACGCTCTAACTCTCACTGGACGTTTGATGAGAGCATTTGAAATCGATTTCTCGTGGATGTCGCTAGGTCATTGGGTATCACTTCTGGAGCAGTGGCCGTCTCGCATGTGTTGGCTGATCGACAGAGCTCTTGAAGTGCACAACAATCAATTGCTCCTTTCGGAAGTGTATCATCAGCTGAAGGACCACATTCCAGCTCAAGATGATCTGATGCAATTGGACAGAAATCTGGAGAACTTTGAAGGATTTTTAGATTCTAAAGGAATTCCGATTGCGGAGAGATTGACTGTTGGACATGTGAAGAAGTTCGTTCCATGTACAAGTAGTTTGGATCCATATTTGAGAAAATTGATAAGAGAGAGGAGCAAAGGATTGGTGGATATTGAGGCACAAGTTGGAAGTGCTGGAATGGCTATTCCACCGAATGCACGTCTTCTTTTCAATGTGAGTTACTGGAAACTATCTAGATTACTATGAAAGATTTTTGCAGGATGAACTAACGTGGATGTCTATCGATACACCTCTTGTGGAGATGAAACTGGATTCTGTTGTCAATCTCATTCGCAAATTGGACGTTCCATCGAACCGTCTCGACTCAATTCTCGATCGCTTCTACAAACTGAATCTGTGTGGTCTCGTTCTCGCCACGTGTCCACTTCCGGAACTCAAAGAGAGCAT</canonical>
            <polymorphic>TGCCATTCTATTTGCACAATTCTGCTCTTAGACAACTTCAATCGAAACTTCGAGAGAAGAGAGAATCTATGGCCGAATGGAAAGAACGATTCAAACGACAGGACACATTCTATGGATCACACCTTTCACTGAGAGAAGCTGATGGTCGGACTAGTCGGAAGGTGAGTAAAAGTCCAAAGATGCTGAAACAAAAAGAAGTTTTCAGAAATCAACAGTGCCAAACATGAATTCTACGAGTGTAGTTGGACGAAATCTGAATGACGGAATCCTCGGTGAAGACTACTTCTCCAACATGAATCCACGTGCAATGAGAAGAATTATGAACGCTCTAACTCTCACTGGACGTTTGATGAGAGCATTTGAAATCGATTTCTCGTGGATGTCGCTAGGTCATTGGGTATCACTTCTGGAGCAGTGGCCGTCTCGCATGTGTTGGCTGATCGACAGAGCTCTTGAAGTGCACAACAATCAATTGCTCCTTTCGGAAGTGTATCATCAGYTGAAGGACCACATTCCAGCTCAAGATGATCTGATGCAATTGGACAGAAATCTGGAGAACTTTGAAGGATTTTTAGATTCTAAAGGAATTCCGATTGCGGAGAGATTGACTGTTGGACATGTGAAGAAGTTCGTTCCATGTACAAGTAGTTTGGATCCATATTTGAGAAAATTGATAAGAGAGAGGAGCAAAGGATTGGTGGATATTGAGGCACAAGTTGGAAGTGCTGGAATGGCTATTCCACCGAATGCACGTCTTCTTTTCAATGTGAGTTACTGGAAACTATCTAGATTACTATGAAAGATTTTTGCAGGATGAACTAACGTGGATGTCTATCGATACACCTCTTGTGGAGATGAAACTGGATTCTGTTGTCAATCTCATTCGCAAATTGGACGTTCCATCGAACCGTCTCGACTCAATTCTCGATCGCTTCTACAAACTGAATCTGTGTGGTCTCGTTCTCGCCACGTGTCCACTTCCGGAACTCAAAGAGAGCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>482 311 138 50 19</canonical_bands>
                <polymorphic_bands>482 311 138 69</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>280 266 216 72 66 50 19 18 13</canonical_bands>
                <polymorphic_bands>280 266 216 72 69 66 18 13</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTATGAACGCTCTAACTCTCA</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTTCTCCAGATTTCTGTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATTATGAACGCTCTAACTCTCACTGGACGTTTGATGAGAGCATTTGAAATCGATTTCTCGTGGATGTCGCTAGGTCATTGGGTATCACTTCTGGAGCAGTGGCCGTCTCGCATGTGTTGGCTGATCGACAGAGCTCTTGAAGTGCACAACAATCAATTGCTCCTTTCGGAAGTGTATCATCAGCTGAAGGACCACATTCCAGCTCAAGATGATCTGATGCAATTGGACAGAAATCTGGAGAACTTTG</canonical_amplicon>
		<polymorphic_amplicon>AATTATGAACGCTCTAACTCTCACTGGACGTTTGATGAGAGCATTTGAAATCGATTTCTCGTGGATGTCGCTAGGTCATTGGGTATCACTTCTGGAGCAGTGGCCGTCTCGCATGTGTTGGCTGATCGACAGAGCTCTTGAAGTGCACAACAATCAATTGCTCCTTTCGGAAGTGTATCATCAGYTGAAGGACCACATTCCAGCTCAAGATGATCTGATGCAATTGGACAGAAATCTGGAGAACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30809</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>354770</contig_pos>
        <strand>+</strand>
        <context>AACGTACAAT[A/C]AGATTTTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCTCATTGAGATCTATTGGCAAGAGCGGAGGGAATCAGACAACGTACAAT</left_flank>
        <right_flank>AGATTTTTGAAAACCTATTTTTATCGGGATGAGTCAAAAGCATAGCAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTTTGAAAAACTATTATTATTCTATGATTCCTAGTTAGAATTTCCTACTCAAATAGACCAGCTTCGAAATATATCAAATTTCAATTACAGTTTTTTCTCTAATGGAAGCCTTCCTTATACACGAACTTTGAGCTCAACTATCTCGGCTCCTATCAGAGATACCAAAAAACGGTTAACTAATAAAATGTTGATGATATCATGATAAACAATTTATCAGTTGACAAGTTTTTGATATCTTTTGTAGGAATTGTGATAATTGAGCTCAAAGTTGATGGTTTGGCTGGGCTTCCATTAGATGAAATACGTTATTCTAATAGTGAATTTCAAAATTGGTTGATTCAACTGATAGCTACATTTCTTGTGTTGTTCACTGATGATAGTGATCAGATTCTGTTGATTGAGTTGTTTGTGTAATTCGAAATGAACGGATCGAAAACAAAGACGATGTGCTCATTGAGATCTATTGGCAAGAGCGGAGGGAATCAGACAACGTACAATAAGATTTTTGAAAACCTATTTTTATCGGGATGAGTCAAAAGCATAGCAATAAACAAAAGTTAATATTTTTCAAAGGAAAAGGGAATATGCCAACAAACAATATTATCTCAAAAAATTACCAAAAACAAACTTCTGTGATAGGGAAGCAAATAAGTCTGAAGGACATTGTAGAACCGTAAACACTCTAATAGAAAGCCACCCTATACTTGGACTTTGGTCCCATATATCTCTGTTCCTGGACGAGATATCAAAAAAAATGGTCAACTGACAAAATATCATTGATACTACGATAAATATTTCATCAATTGACTACTTTTTGATGTACATATTTCCCAAAAATTGAGGTAAATTAGATCAAGTCCAAGTATAGGAAGACCTTATATTAAAGTGTTTACGATATCTTACAAACCGTTTAACGTAAAACCCATTTTGAACCAATTTATCTCACAATCAGTCCCCGTAAGAGATAAATCAGACAAATTTGATGGTTAGGAGAAAATT</canonical>
            <polymorphic>CGTTTGAAAAACTATTATTATTCTATGATTCCTAGTTAGAATTTCCTACTCAAATAGACCAGCTTCGAAATATATCAAATTTCAATTACAGTTTTTTCTCTAATGGAAGCCTTCCTTATACACGAACTTTGAGCTCAACTATCTCGGCTCCTATCAGAGATACCAAAAAACGGTTAACTAATAAAATGTTGATGATATCATGATAAACAATTTATCAGTTGACAAGTTTTTGATATCTTTTGTAGGAATTGTGATAATTGAGCTCAAAGTTGATGGTTTGGCTGGGCTTCCATTAGATGAAATACGTTATTCTAATAGTGAATTTCAAAATTGGTTGATTCAACTGATAGCTACATTTCTTGTGTTGTTCACTGATGATAGTGATCAGATTCTGTTGATTGAGTTGTTTGTGTAATTCGAAATGAACGGATCGAAAACAAAGACGATGTGCTCATTGAGATCTATTGGCAAGAGCGGAGGGAATCAGACAACGTACAATMAGATTTTTGAAAACCTATTTTTATCGGGATGAGTCAAAAGCATAGCAATAAACAAAAGTTAATATTTTTCAAAGGAAAAGGGAATATGCCAACAAACAATATTATCTCAAAAAATTACCAAAAACAAACTTCTGTGATAGGGAAGCAAATAAGTCTGAAGGACATTGTAGAACCGTAAACACTCTAATAGAAAGCCACCCTATACTTGGACTTTGGTCCCATATATCTCTGTTCCTGGACGAGATATCAAAAAAAATGGTCAACTGACAAAATATCATTGATACTACGATAAATATTTCATCAATTGACTACTTTTTGATGTACATATTTCCCAAAAATTGAGGTAAATTAGATCAAGTCCAAGTATAGGAAGACCTTATATTAAAGTGTTTACGATATCTTACAAACCGTTTAACGTAAAACCCATTTTGAACCAATTTATCTCACAATCAGTCCCCGTAAGAGATAAATCAGACAAATTTGATGGTTAGGAGAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGTTGATTGAGTTGTTTGT</pcr_primer_p1>
		<pcr_primer_p2>ATCACAGAAGTTTGTTTTTGGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGTTGATTGAGTTGTTTGTGTAATTCGAAATGAACGGATCGAAAACAAAGACGATGTGCTCATTGAGATCTATTGGCAAGAGCGGAGGGAATCAGACAACGTACAATAAGATTTTTGAAAACCTATTTTTATCGGGATGAGTCAAAAGCATAGCAATAAACAAAAGTTAATATTTTTCAAAGGAAAAGGGAATATGCCAACAAACAATATTATCTCAAAAAATTACCAAAAACAAACTTCTGTGAT</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGTTGATTGAGTTGTTTGTGTAATTCGAAATGAACGGATCGAAAACAAAGACGATGTGCTCATTGAGATCTATTGGCAAGAGCGGAGGGAATCAGACAACGTACAATMAGATTTTTGAAAACCTATTTTTATCGGGATGAGTCAAAAGCATAGCAATAAACAAAAGTTAATATTTTTCAAAGGAAAAGGGAATATGCCAACAAACAATATTATCTCAAAAAATTACCAAAAACAAACTTCTGTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30810</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>356464</contig_pos>
        <strand>+</strand>
        <context>ACGAGACATA[A/G]CTGGAAGTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTCGAAAGCAACCAAAAATAAAAGCAAAACGAATGCAAGACGAGACATA</left_flank>
        <right_flank>CTGGAAGTTTTTGAACTTTTAGATGAAAAAAATTATTAAAAATTCGAGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAACATGGAAGTGTATAATTCTGAATAAGTTATTCTTAAGAGTCTTCAGGTTCTGAATATTGTTAGACATAACAGTTTAGTCGCTTCTTTAAATCTTAAAGATGTTTTTTTCAAACAGAGAATAGACTAAACTAGACTACGAAAACTTTGTATTTCTATCAAAACTTACTGGTTGAGTGTTGCAATTATGATGAATACGGATGTATGGTTCGATTTTTCCAATCTCATCTTCCTCTCCGAACAATTCGAATTCTCCTTCCTTGTTAGTATGGATCTGGGTCAACTCGTCATTTGGGTCCACTGAAATTCGAAAAATTAATCTAATCCTTTACTCAAATCTAGAGCTTACAAGTGTCCTTATCAATCAGGATAACATGTGCATTGGCTACTCTTCTCTTATTACAAACGGCAATTCCCTTGACTGTCACATTTTGAAGTTTGGCAGAAACTTCGAAAGCAACCAAAAATAAAAGCAAAACGAATGCAAGACGAGACATAGCTGGAAGTTTTTGAACTTTTAGATGAAAAAAATTATTAAAAATTCGAGACTGGAAGTTTCAATCGCTTTCAATGCACTTATATCAGCGATGGGCGTGTCCCACCGGAAGGCATGTGATCGTTTTCATAAATAATCTCGAATACATCCATTCATTTAAAACAGGTGACAGAAATTGAAGGAAAAAACGGGGGAGGAATCGAAAAAAGATAAAAAGAAGGAATCGAAGAGCAAAAGTTTTCTGGAGGACCATCGTAAATATATAGAAATAGATCGGAGAGCAGATGACTCATTAAAAGAAGGGAAACTTCGATTTGTGAACTTCTCTAGGGAGAATGAAGATGATATTATAGAAATGGGTGAACATAAAAAAGATGCCGCAAAACCAGTATTAGAAGGCCCTTCACACTGTCAAGTTTGAGCTTATTTTTTATGGCTCCTTTGCAAGATATTAAAAATGTATCAGCTGATAAAATGCGTTCGATATTGTGATACTTAAACAA</canonical>
            <polymorphic>CAAACATGGAAGTGTATAATTCTGAATAAGTTATTCTTAAGAGTCTTCAGGTTCTGAATATTGTTAGACATAACAGTTTAGTCGCTTCTTTAAATCTTAAAGATGTTTTTTTCAAACAGAGAATAGACTAAACTAGACTACGAAAACTTTGTATTTCTATCAAAACTTACTGGTTGAGTGTTGCAATTATGATGAATACGGATGTATGGTTCGATTTTTCCAATCTCATCTTCCTCTCCGAACAATTCGAATTCTCCTTCCTTGTTAGTATGGATCTGGGTCAACTCGTCATTTGGGTCCACTGAAATTCGAAAAATTAATCTAATCCTTTACTCAAATCTAGAGCTTACAAGTGTCCTTATCAATCAGGATAACATGTGCATTGGCTACTCTTCTCTTATTACAAACGGCAATTCCCTTGACTGTCACATTTTGAAGTTTGGCAGAAACTTCGAAAGCAACCAAAAATAAAAGCAAAACGAATGCAAGACGAGACATARCTGGAAGTTTTTGAACTTTTAGATGAAAAAAATTATTAAAAATTCGAGACTGGAAGTTTCAATCGCTTTCAATGCACTTATATCAGCGATGGGCGTGTCCCACCGGAAGGCATGTGATCGTTTTCATAAATAATCTCGAATACATCCATTCATTTAAAACAGGTGACAGAAATTGAAGGAAAAAACGGGGGAGGAATCGAAAAAAGATAAAAAGAAGGAATCGAAGAGCAAAAGTTTTCTGGAGGACCATCGTAAATATATAGAAATAGATCGGAGAGCAGATGACTCATTAAAAGAAGGGAAACTTCGATTTGTGAACTTCTCTAGGGAGAATGAAGATGATATTATAGAAATGGGTGAACATAAAAAAGATGCCGCAAAACCAGTATTAGAAGGCCCTTCACACTGTCAAGTTTGAGCTTATTTTTTATGGCTCCTTTGCAAGATATTAAAAATGTATCAGCTGATAAAATGCGTTCGATATTGTGATACTTAAACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>419 345 155 44 37</canonical_bands>
                <polymorphic_bands>574 345 44 37</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>396 345 114 41 37 30 23 14</canonical_bands>
                <polymorphic_bands>510 345 41 37 30 23 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGACTGTCACATTTTGAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>TCTGTCACCTGTTTTAAATGAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGACTGTCACATTTTGAAGTTTGGCAGAAACTTCGAAAGCAACCAAAAATAAAAGCAAAACGAATGCAAGACGAGACATAGCTGGAAGTTTTTGAACTTTTAGATGAAAAAAATTATTAAAAATTCGAGACTGGAAGTTTCAATCGCTTTCAATGCACTTATATCAGCGATGGGCGTGTCCCACCGGAAGGCATGTGATCGTTTTCATAAATAATCTCGAATACATCCATTCATTTAAAACAGGTGACAGA</canonical_amplicon>
		<polymorphic_amplicon>TGACTGTCACATTTTGAAGTTTGGCAGAAACTTCGAAAGCAACCAAAAATAAAAGCAAAACGAATGCAAGACGAGACATARCTGGAAGTTTTTGAACTTTTAGATGAAAAAAATTATTAAAAATTCGAGACTGGAAGTTTCAATCGCTTTCAATGCACTTATATCAGCGATGGGCGTGTCCCACCGGAAGGCATGTGATCGTTTTCATAAATAATCTCGAATACATCCATTCATTTAAAACAGGTGACAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30811</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>422257</contig_pos>
        <strand></strand>
        <context>aaaaagttgt[C/T]aactaatgaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTCTAGTTTGAACAAATTGTTATTTTTTGACTTTAAATCAAAAAGTTGT</left_flank>
        <right_flank>AACTAATGAAACGTTAGTGACAAACATTTCTTCAGAACTTTTTGATGACT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAATAAATCCCATCCTTTAGTAACCCAAACAATATTTTTTCAAGTTTGCAATTTTCATCTCGAAATCTTGAGAAGAGCCTGAAATCTCAAATTTTTATATTTTTTGAATGGGTTCTAGATTGATAAATTTGTTTTATCAAGAACTTTAAGATGAGTATAATGATACCCTAGCTTAGAAAAACGTTTATTTTTGGGTCTTCTTCTTGTCCAGATTTAACCGAAAATGTAAAATTTATAAAATTAGGTCATGTTTATGCTGATTTAGAAACTCTTGACAAGCTGATTCTGATCCAGCAACGTCCAAAAAGATTCCAATTGCTGGATTTTCAAAAAATCATTTTTCAAGTTTTTCAACTTTTGAGAAGAACGTAAAATCTCTAATTCCTATTTTAACTCGGACCTAAAACATTAAATTGGTCTTTAAAAGCTTGAATATGAGGATAATGGTGGTCTAGTTTGAACAAATTGTTATTTTTTGACTTTAAATCAAAAAGTTGTCAACTAATGAAACGTTAGTGACAAACATTTCTTCAGAACTTTTTGATGACTGTCCCAGGAACCATGATATCTGGGTTCAAAGTTGACGATTTGATTGGCACTCTATTAGAGTGTTTCCGGCATACTTGTAATCCGGGCCTTCACGGGCCCTGCCATAACTTCTTTCAGAATCTGTATTTTCGAACGAACTAAATCAGATATGATAGAGCTCCACGAGTACTACAAAACGGTATTATTTGTAATACTGTTTCTTGTCTATGAACAGAGTTACAGAGCAAAAGGAACAAAAAAGCAGGCCCGGGCCTGCCGGGCCCTGCGAGAAAAGCCACTTTATGATCTGTAACTTTGTTCATAGATAAGATACAGTATTTCAAATAATACCGTTTTGTAGTACTCGTGGAGCTCTATCCTATCTGATTTAGTTGGTTCAAAAATACAGATTCTGAAAGAAACTATGGCAGGGCCCGTGAAGGCCCGGCAAACTATGGCAGGGCCCGTGAA</canonical>
            <polymorphic>CTAATAAATCCCATCCTTTAGTAACCCAAACAATATTTTTTCAAGTTTGCAATTTTCATCTCGAAATCTTGAGAAGAGCCTGAAATCTCAAATTTTTATATTTTTTGAATGGGTTCTAGATTGATAAATTTGTTTTATCAAGAACTTTAAGATGAGTATAATGATACCCTAGCTTAGAAAAACGTTTATTTTTGGGTCTTCTTCTTGTCCAGATTTAACCGAAAATGTAAAATTTATAAAATTAGGTCATGTTTATGCTGATTTAGAAACTCTTGACAAGCTGATTCTGATCCAGCAACGTCCAAAAAGATTCCAATTGCTGGATTTTCAAAAAATCATTTTTCAAGTTTTTCAACTTTTGAGAAGAACGTAAAATCTCTAATTCCTATTTTAACTCGGACCTAAAACATTAAATTGGTCTTTAAAAGCTTGAATATGAGGATAATGGTGGTCTAGTTTGAACAAATTGTTATTTTTTGACTTTAAATCAAAAAGTTGTYAACTAATGAAACGTTAGTGACAAACATTTCTTCAGAACTTTTTGATGACTGTCCCAGGAACCATGATATCTGGGTTCAAAGTTGACGATTTGATTGGCACTCTATTAGAGTGTTTCCGGCATACTTGTAATCCGGGCCTTCACGGGCCCTGCCATAACTTCTTTCAGAATCTGTATTTTCGAACGAACTAAATCAGATATGATAGAGCTCCACGAGTACTACAAAACGGTATTATTTGTAATACTGTTTCTTGTCTATGAACAGAGTTACAGAGCAAAAGGAACAAAAAAGCAGGCCCGGGCCTGCCGGGCCCTGCGAGAAAAGCCACTTTATGATCTGTAACTTTGTTCATAGATAAGATACAGTATTTCAAATAATACCGTTTTGTAGTACTCGTGGAGCTCTATCCTATCTGATTTAGTTGGTTCAAAAATACAGATTCTGAAAGAAACTATGGCAGGGCCCGTGAAGGCCCGGCAAACTATGGCAGGGCCCGTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>500 417 83</canonical_bands>
                <polymorphic_bands>583 417</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATAATGGTGGTCTAGTTTGA</pcr_primer_p1>
		<pcr_primer_p2>TACTTGTAATCCGAGCCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>588</pcr_amplicon_size>
		<canonical_amplicon>GGATAATGGTGGTCTAGTTTGAACAAATTGTTATTTTTTGACTTTAAATCAAAAAGTTGTCAACTAATGAAACGTTAGTGA</canonical_amplicon>
		<polymorphic_amplicon>GGATAATGGTGGTCTAGTTTGAACAAATTGTTATTTTTTGACTTTAAATCAAAAAGTTGTYAACTAATGAAACGTTAGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30812</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>422381</contig_pos>
        <strand>+</strand>
        <context>ttccggCATA[C/T]TTGTAATCCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTCAAAGTTGACGATTTGATTGGCACTCTATTAGAGTGTTTCCGGCATA</left_flank>
        <right_flank>TTGTAATCCGGGCCTTCACGGGCCCTGCCATAACTTCTTTCAGAATCTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATTTGTTTTATCAAGAACTTTAAGATGAGTATAATGATACCCTAGCTTAGAAAAACGTTTATTTTTGGGTCTTCTTCTTGTCCAGATTTAACCGAAAATGTAAAATTTATAAAATTAGGTCATGTTTATGCTGATTTAGAAACTCTTGACAAGCTGATTCTGATCCAGCAACGTCCAAAAAGATTCCAATTGCTGGATTTTCAAAAAATCATTTTTCAAGTTTTTCAACTTTTGAGAAGAACGTAAAATCTCTAATTCCTATTTTAACTCGGACCTAAAACATTAAATTGGTCTTTAAAAGCTTGAATATGAGGATAATGGTGGTCTAGTTTGAACAAATTGTTATTTTTTGACTTTAAATCAAAAAGTTGTCAACTAATGAAACGTTAGTGACAAACATTTCTTCAGAACTTTTTGATGACTGTCCCAGGAACCATGATATCTGGGTTCAAAGTTGACGATTTGATTGGCACTCTATTAGAGTGTTTCCGGCATACTTGTAATCCGGGCCTTCACGGGCCCTGCCATAACTTCTTTCAGAATCTGTATTTTCGAACGAACTAAATCAGATATGATAGAGCTCCACGAGTACTACAAAACGGTATTATTTGTAATACTGTTTCTTGTCTATGAACAGAGTTACAGAGCAAAAGGAACAAAAAAGCAGGCCCGGGCCTGCCGGGCCCTGCGAGAAAAGCCACTTTATGATCTGTAACTTTGTTCATAGATAAGATACAGTATTTCAAATAATACCGTTTTGTAGTACTCGTGGAGCTCTATCCTATCTGATTTAGTTGGTTCAAAAATACAGATTCTGAAAGAAACTATGGCAGGGCCCGTGAAGGCCCGGCAAACTATGGCAGGGCCCGTGAAGGCCCGGAAAGGCTCGGATTACAAGTATGGTTTACGGTATCTCGATTTTGTAAATACCCCTTATGTCCTATCAAACGAGAAAAGCACAAGTAAACAACAATTTCCCGATTTGTACATTGATAAG</canonical>
            <polymorphic>TAAATTTGTTTTATCAAGAACTTTAAGATGAGTATAATGATACCCTAGCTTAGAAAAACGTTTATTTTTGGGTCTTCTTCTTGTCCAGATTTAACCGAAAATGTAAAATTTATAAAATTAGGTCATGTTTATGCTGATTTAGAAACTCTTGACAAGCTGATTCTGATCCAGCAACGTCCAAAAAGATTCCAATTGCTGGATTTTCAAAAAATCATTTTTCAAGTTTTTCAACTTTTGAGAAGAACGTAAAATCTCTAATTCCTATTTTAACTCGGACCTAAAACATTAAATTGGTCTTTAAAAGCTTGAATATGAGGATAATGGTGGTCTAGTTTGAACAAATTGTTATTTTTTGACTTTAAATCAAAAAGTTGTCAACTAATGAAACGTTAGTGACAAACATTTCTTCAGAACTTTTTGATGACTGTCCCAGGAACCATGATATCTGGGTTCAAAGTTGACGATTTGATTGGCACTCTATTAGAGTGTTTCCGGCATAYTTGTAATCCGGGCCTTCACGGGCCCTGCCATAACTTCTTTCAGAATCTGTATTTTCGAACGAACTAAATCAGATATGATAGAGCTCCACGAGTACTACAAAACGGTATTATTTGTAATACTGTTTCTTGTCTATGAACAGAGTTACAGAGCAAAAGGAACAAAAAAGCAGGCCCGGGCCTGCCGGGCCCTGCGAGAAAAGCCACTTTATGATCTGTAACTTTGTTCATAGATAAGATACAGTATTTCAAATAATACCGTTTTGTAGTACTCGTGGAGCTCTATCCTATCTGATTTAGTTGGTTCAAAAATACAGATTCTGAAAGAAACTATGGCAGGGCCCGTGAAGGCCCGGCAAACTATGGCAGGGCCCGTGAAGGCCCGGAAAGGCTCGGATTACAAGTATGGTTTACGGTATCTCGATTTTGTAAATACCCCTTATGTCCTATCAAACGAGAAAAGCACAAGTAAACAACAATTTCCCGATTTGTACATTGATAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATAATGGTGGTCTAGTTTGA</pcr_primer_p1>
		<pcr_primer_p2>TACTTGTAATCCGAGCCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>588</pcr_amplicon_size>
		<canonical_amplicon>GGATAATGGTGGTCTAGTTTGAACAAATTGTTATTTTTTGACTTTAAATCAAAAAGTTGTCAACTAATGAAACGTTAGTGACAAACATTTCTTCAGAACTTTTTGATGACTGTCCCAGGAACCATGATATCTGGGTTCAAAGTTGACGATTTGATTGGCACTCTATTAGAGTGTTTCCGGCATACTTGTAATCCGGGCCTTCACGGGCCCTGCCATAACTTCTTTCAGAATCTGTATTTTCGAACGAACTAAATCAGATATGATAGAGCTCCACGAGTACTACAAAACGGTATTATTTGTAATACTGTTTCTTGTCTATGAACAGAGTTACAGAGCAAAAGGAACAAAAAAGCAGGCCCGGGCCTGCCGGGCCCTGCGAGAAAAGCCACTTTATGATCTGTAACTTTGTTCATAGATAAGATACAGTATTTCAAATAATACCGTTTTGTAGTACTCGTGGAGCTCTATCCTATCTGATTTAGTTGGTTCAAAAATACAGATTCTGAAAGAAACTATGGCAGGGCCCGTGAAGGCCCGGCAAACTATGGCAGGGCCCGTGAAGGCCCGGAAAGGCTCGGATTACAAGTA</canonical_amplicon>
		<polymorphic_amplicon>GGATAATGGTGGTCTAGTTTGAACAAATTGTTATTTTTTGACTTTAAATCAAAAAGTTGTCAACTAATGAAACGTTAGTGACAAACATTTCTTCAGAACTTTTTGATGACTGTCCCAGGAACCATGATATCTGGGTTCAAAGTTGACGATTTGATTGGCACTCTATTAGAGTGTTTCCGGCATAYTTGTAATCCGGGCCTTCACGGGCCCTGCCATAACTTCTTTCAGAATCTGTATTTTCGAACGAACTAAATCAGATATGATAGAGCTCCACGAGTACTACAAAACGGTATTATTTGTAATACTGTTTCTTGTCTATGAACAGAGTTACAGAGCAAAAGGAACAAAAAAGCAGGCCCGGGCCTGCCGGGCCCTGCGAGAAAAGCCACTTTATGATCTGTAACTTTGTTCATAGATAAGATACAGTATTTCAAATAATACCGTTTTGTAGTACTCGTGGAGCTCTATCCTATCTGATTTAGTTGGTTCAAAAATACAGATTCTGAAAGAAACTATGGCAGGGCCCGTGAAGGCCCGGCAAACTATGGCAGGGCCCGTGAAGGCCCGGAAAGGCTCGGATTACAAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30813</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>424523</contig_pos>
        <strand>+</strand>
        <context>ATGAGTCATA[A/G]AGACTGAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCGGATGCCGAGAATCATGAGTCTAGGATTACGGTAGTTATGAGTCATA</left_flank>
        <right_flank>AGACTGAAGACGTTCTAAAATGAGGAAAAACGGTTAGGAACATTTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAGTCCCAAAGTGGCACCTGCCCTTGTTGTCGGCACCTTGTATCATCGAAGTGTGTGTTCAATCATTTAGTAGACAGATCAGTCTCTTGTCCCATTCTAGTCGCGCTCTCTTTTCATTTTTCTAAATCCTAATCCTTGTTTAAAGTATCGGAGAACATATGAAAGAAAGCGAGAGGTTACGCCATCATTCAATCCACTTCGTCTTTTGAGAAGATGACACGACGACGACTCGAATATTACTGTAGTTATGAAGGATGTTGGCAAACAAGGAGGAGATACAAGTGAAGAAGAAGAAGAGAGGATATGTCCATAAATATATATAGATAGATCATGAGCAAATAGAACTAAAAGAATGCGGGAAAATGAAGGATACTCGCTTCTGGATTTCACGAAGACGATGATTTGGCTTGTCGAGGAATCGGGAATTAGTTATTCTGGATTCGAAATCCGGATGCCGAGAATCATGAGTCTAGGATTACGGTAGTTATGAGTCATAGAGACTGAAGACGTTCTAAAATGAGGAAAAACGGTTAGGAACATTTTTTTTGATACAGTGAGGAATATCAGATCAAATGATATTATAGGACCAGAGATAAAAATCGAAATTTTTTGGTGGAGTCAAAAAGCCTTATATATTAATTGTAGACACAACGGATGTATGATGCTTCGAAGTGGAAACATTCTTTTAAAAAAGGTTGAAAATGTAATTTTTATCAATCCCGTAACATCTGACTATTTTTCCAGAGTCCAGAGATATTTCTCCCAATAGAAGCCCAACCAAACCATCAATTTCGATTATCTCTAACGTTTTATCAGTGGAAAAGTTTTTGATATTTTTTAAAGGAACCTAGATAATTGAGGTCAAAGTTGACGGTTTGGGTGAGCTTTTATTTGAGAAAATACGGCATACTTTTTGTTGTAGACTCCAACCGTGATGAAAAATAGAAATATATATCAAGTTGGCGGGATTGATATCTAAATTTGTGCCTTTACCCAG</canonical>
            <polymorphic>AAGAAGTCCCAAAGTGGCACCTGCCCTTGTTGTCGGCACCTTGTATCATCGAAGTGTGTGTTCAATCATTTAGTAGACAGATCAGTCTCTTGTCCCATTCTAGTCGCGCTCTCTTTTCATTTTTCTAAATCCTAATCCTTGTTTAAAGTATCGGAGAACATATGAAAGAAAGCGAGAGGTTACGCCATCATTCAATCCACTTCGTCTTTTGAGAAGATGACACGACGACGACTCGAATATTACTGTAGTTATGAAGGATGTTGGCAAACAAGGAGGAGATACAAGTGAAGAAGAAGAAGAGAGGATATGTCCATAAATATATATAGATAGATCATGAGCAAATAGAACTAAAAGAATGCGGGAAAATGAAGGATACTCGCTTCTGGATTTCACGAAGACGATGATTTGGCTTGTCGAGGAATCGGGAATTAGTTATTCTGGATTCGAAATCCGGATGCCGAGAATCATGAGTCTAGGATTACGGTAGTTATGAGTCATARAGACTGAAGACGTTCTAAAATGAGGAAAAACGGTTAGGAACATTTTTTTTGATACAGTGAGGAATATCAGATCAAATGATATTATAGGACCAGAGATAAAAATCGAAATTTTTTGGTGGAGTCAAAAAGCCTTATATATTAATTGTAGACACAACGGATGTATGATGCTTCGAAGTGGAAACATTCTTTTAAAAAAGGTTGAAAATGTAATTTTTATCAATCCCGTAACATCTGACTATTTTTCCAGAGTCCAGAGATATTTCTCCCAATAGAAGCCCAACCAAACCATCAATTTCGATTATCTCTAACGTTTTATCAGTGGAAAAGTTTTTGATATTTTTTAAAGGAACCTAGATAATTGAGGTCAAAGTTGACGGTTTGGGTGAGCTTTTATTTGAGAAAATACGGCATACTTTTTGTTGTAGACTCCAACCGTGATGAAAAATAGAAATATATATCAAGTTGGCGGGATTGATATCTAAATTTGTGCCTTTACCCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGAGCAAATAGAACTAAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTGATCTGATATTCCTCACTGT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CATGAGCAAATAGAACTAAAAGAATGCGGGAAAATGAAGGATACTCGCTTCTGGATTTCACGAAGACGATGATTTGGCTTGTCGAGGAATCGGGAATTAGTTATTCTGGATTCGAAATCCGGATGCCGAGAATCATGAGTCTAGGATTACGGTAGTTATGAGTCATAGAGACTGAAGACGTTCTAAAATGAGGAAAAACGGTTAGGAACATTTTTTTTGATACAGTGAGGAATATCAGATCAAA</canonical_amplicon>
		<polymorphic_amplicon>CATGAGCAAATAGAACTAAAAGAATGCGGGAAAATGAAGGATACTCGCTTCTGGATTTCACGAAGACGATGATTTGGCTTGTCGAGGAATCGGGAATTAGTTATTCTGGATTCGAAATCCGGATGCCGAGAATCATGAGTCTAGGATTACGGTAGTTATGAGTCATARAGACTGAAGACGTTCTAAAATGAGGAAAAACGGTTAGGAACATTTTTTTTGATACAGTGAGGAATATCAGATCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30814</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>424557</contig_pos>
        <strand>+</strand>
        <context>GGAAAAACGG[G/T]TAGGAACATT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTAGTTATGAGTCATAGAGACTGAAGACGTTCTAAAATGAGGAAAAACGG</left_flank>
        <right_flank>TAGGAACATTTTTTTTGATACAGTGAGGAATATCAGATCAAATGATATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCACCTTGTATCATCGAAGTGTGTGTTCAATCATTTAGTAGACAGATCAGTCTCTTGTCCCATTCTAGTCGCGCTCTCTTTTCATTTTTCTAAATCCTAATCCTTGTTTAAAGTATCGGAGAACATATGAAAGAAAGCGAGAGGTTACGCCATCATTCAATCCACTTCGTCTTTTGAGAAGATGACACGACGACGACTCGAATATTACTGTAGTTATGAAGGATGTTGGCAAACAAGGAGGAGATACAAGTGAAGAAGAAGAAGAGAGGATATGTCCATAAATATATATAGATAGATCATGAGCAAATAGAACTAAAAGAATGCGGGAAAATGAAGGATACTCGCTTCTGGATTTCACGAAGACGATGATTTGGCTTGTCGAGGAATCGGGAATTAGTTATTCTGGATTCGAAATCCGGATGCCGAGAATCATGAGTCTAGGATTACGGTAGTTATGAGTCATAGAGACTGAAGACGTTCTAAAATGAGGAAAAACGGTTAGGAACATTTTTTTTGATACAGTGAGGAATATCAGATCAAATGATATTATAGGACCAGAGATAAAAATCGAAATTTTTTGGTGGAGTCAAAAAGCCTTATATATTAATTGTAGACACAACGGATGTATGATGCTTCGAAGTGGAAACATTCTTTTAAAAAAGGTTGAAAATGTAATTTTTATCAATCCCGTAACATCTGACTATTTTTCCAGAGTCCAGAGATATTTCTCCCAATAGAAGCCCAACCAAACCATCAATTTCGATTATCTCTAACGTTTTATCAGTGGAAAAGTTTTTGATATTTTTTAAAGGAACCTAGATAATTGAGGTCAAAGTTGACGGTTTGGGTGAGCTTTTATTTGAGAAAATACGGCATACTTTTTGTTGTAGACTCCAACCGTGATGAAAAATAGAAATATATATCAAGTTGGCGGGATTGATATCTAAATTTGTGCCTTTACCCAGTGACTTTCAGACAATACAACTTCTGTAACTCTCC</canonical>
            <polymorphic>GGCACCTTGTATCATCGAAGTGTGTGTTCAATCATTTAGTAGACAGATCAGTCTCTTGTCCCATTCTAGTCGCGCTCTCTTTTCATTTTTCTAAATCCTAATCCTTGTTTAAAGTATCGGAGAACATATGAAAGAAAGCGAGAGGTTACGCCATCATTCAATCCACTTCGTCTTTTGAGAAGATGACACGACGACGACTCGAATATTACTGTAGTTATGAAGGATGTTGGCAAACAAGGAGGAGATACAAGTGAAGAAGAAGAAGAGAGGATATGTCCATAAATATATATAGATAGATCATGAGCAAATAGAACTAAAAGAATGCGGGAAAATGAAGGATACTCGCTTCTGGATTTCACGAAGACGATGATTTGGCTTGTCGAGGAATCGGGAATTAGTTATTCTGGATTCGAAATCCGGATGCCGAGAATCATGAGTCTAGGATTACGGTAGTTATGAGTCATAGAGACTGAAGACGTTCTAAAATGAGGAAAAACGGKTAGGAACATTTTTTTTGATACAGTGAGGAATATCAGATCAAATGATATTATAGGACCAGAGATAAAAATCGAAATTTTTTGGTGGAGTCAAAAAGCCTTATATATTAATTGTAGACACAACGGATGTATGATGCTTCGAAGTGGAAACATTCTTTTAAAAAAGGTTGAAAATGTAATTTTTATCAATCCCGTAACATCTGACTATTTTTCCAGAGTCCAGAGATATTTCTCCCAATAGAAGCCCAACCAAACCATCAATTTCGATTATCTCTAACGTTTTATCAGTGGAAAAGTTTTTGATATTTTTTAAAGGAACCTAGATAATTGAGGTCAAAGTTGACGGTTTGGGTGAGCTTTTATTTGAGAAAATACGGCATACTTTTTGTTGTAGACTCCAACCGTGATGAAAAATAGAAATATATATCAAGTTGGCGGGATTGATATCTAAATTTGTGCCTTTACCCAGTGACTTTCAGACAATACAACTTCTGTAACTCTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>320 239 210 100 58 49 24</canonical_bands>
                <polymorphic_bands>320 239 210 100 73 58</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATCGGGAATTAGTTATTCTG</pcr_primer_p1>
		<pcr_primer_p2>TACATCCGTTGTGTCTACAATTA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GAATCGGGAATTAGTTATTCTGGATTCGAAATCCGGATGCCGAGAATCATGAGTCTAGGATTACGGTAGTTATGAGTCATAGAGACTGAAGACGTTCTAAAATGAGGAAAAACGGTTAGGAACATTTTTTTTGATACAGTGAGGAATATCAGATCAAATGATATTATAGGACCAGAGATAAAAATCGAAATTTTTTGGTGGAGTCAAAAAGCCTTATATATTAATTGTAGACACAACGGATGTA</canonical_amplicon>
		<polymorphic_amplicon>GAATCGGGAATTAGTTATTCTGGATTCGAAATCCGGATGCCGAGAATCATGAGTCTAGGATTACGGTAGTTATGAGTCATAGAGACTGAAGACGTTCTAAAATGAGGAAAAACGGKTAGGAACATTTTTTTTGATACAGTGAGGAATATCAGATCAAATGATATTATAGGACCAGAGATAAAAATCGAAATTTTTTGGTGGAGTCAAAAAGCCTTATATATTAATTGTAGACACAACGGATGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30815</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>426839</contig_pos>
        <strand></strand>
        <context>TTTRAAAAAA[G/A]GTCTAGATGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAGTTTGATGGATGCATATAAACTGAAAATATAGATAAATTTGAAAAAA</left_flank>
        <right_flank>GTCTAGATGTAGAAAGCGAATCAAAATATACTTTCAACTTTGACCCCACA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTCCCCCAGAGTGCTTAGCATCAGAGTTCTGGTCCAGAATCCAAAAAGTTTTTGCGGCAAAACTACCATTCCACTACTCTTCCTCGAAAGTTTTGTGTGTCCCAACTCTTTTCATCAGAAGTCTTGTCATCAGAAGACAATGGTCAAGTATGCCACAACTGGCGGTGCGCGTCTTTTGAGTCCTTTTGAGGTCCTCCTCTTCAACTTGTGCCTTCCAAAAAGAGAGATGAGGAATAAAAGCAGAAGTGGTGATTGTAAAAGGAAAAGAACAAAGTTTCGAGAGAGTGAGGTGCTCCGTGAGCACTGAACAGTTAGATCCAAGAAATCCAACCGGAAGTTATTGAGAGGGAAATATAAGAATAGTGGTGCACCTGAAGATTTGGGTCTATCCCTGGAAGGAAAGTTCGGCAAATACTGACAGAACTGAAAAAATGCTCAACGTTGCCAAAAGTTTGATGGATGCATATAAACTGAAAATATAGATAAATTTGAAAAAAGGTCTAGATGTAGAAAGCGAATCAAAATATACTTTCAACTTTGACCCCACATACCTAGGTTCCTGTGAAAGATATCAAAAAATTGTCAACTAACGAAATATTTTTGATATTATGATAAAAATATTGTCAGTGGACTACTTTTTGATATCTTTTACATGAAATGAGATATATGAGCTCAAACGGGTCGGGGGCGTTCTATTAGAGTGTTTACAGTAACTTGCTCTGATGTTGGCTATCATAATTATCAACGTTGTGATTCAGAAACCATTAAAAAAACGGTCGATGCCTGTCTCTCCAGAAATACTCATCTCTCTATAAGCATCAATTAAACGTAGTCTCCGAAAAAAGAGCATAATGATTAGGTTGAACGGTAGCTTGAAAAGAACCGGGAGGATCTTATCTAGGTCGCACAGTAGCCCACCTGTTCAATATTTGCAAAACAGCTGAAAAAAAACCGAAAAAATCAAAGGGGCGTGGCTTCTTGACATCGCTTTCAACTAC</canonical>
            <polymorphic>TGTTCCCCCAGAGTGCTTAGCATCAGAGTTCTGGTCCAGAATCCAAAAAGTTTTTGCGGCAAAACTACCATTCCACTACTCTTCCTCGAAAGTTTTGTGTGTCCCAACTCTTTTCATCAGAAGTCTTGTCATCAGAAGACAATGGTCAAGTATGCCACAACTGGCGGTGCGCGTCTTTTGAGTCCTTTTGAGGTCCTCCTCTTCAACTTGTGCCTTCCAAAAAGAGAGATGAGGAATAAAAGCAGAAGTGGTGATTGTAAAAGGAAAAGAACAAAGTTTCGAGAGAGTGAGGTGCTCCGTGAGCACTGAACAGTTAGATCCAAGAAATCCAACCGGAAGTTATTGAGAGGGAAATATAAGAATAGTGGTGCACCTGAAGATTTGGGTCTATCCCTGGAAGGAAAGTTCGGCAAATACTGACAGAACTGAAAAAATGCTCAACGTTGCCAAAAGTTTGATGGATGCATATAAACTGAAAATATAGATAAATTTGAAAAAARGTCTAGATGTAGAAAGCGAATCAAAATATACTTTCAACTTTGACCCCACATACCTAGGTTCCTGTGAAAGATATCAAAAAATTGTCAACTAACGAAATATTTTTGATATTATGATAAAAATATTGTCAGTGGACTACTTTTTGATATCTTTTACATGAAATGAGATATATGAGCTCAAACGGGTCGGGGGCGTTCTATTAGAGTGTTTACAGTAACTTGCTCTGATGTTGGCTATCATAATTATCAACGTTGTGATTCAGAAACCATTAAAAAAACGGTCGATGCCTGTCTCTCCAGAAATACTCATCTCTCTATAAGCATCAATTAAACGTAGTCTCCGAAAAAAGAGCATAATGATTAGGTTGAACGGTAGCTTGAAAAGAACCGGGAGGATCTTATCTAGGTCGCACAGTAGCCCACCTGTTCAATATTTGCAAAACAGCTGAAAAAAAACCGAAAAAATCAAAGGGGCGTGGCTTCTTGACATCGCTTTCAACTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAAATACTGACAGAACTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TAGCCAACATCAGAGCAAGT</pcr_primer_p2>
		<pcr_amplicon_size>325</pcr_amplicon_size>
		<canonical_amplicon>GCAAATACTGACAGAACTGAAAAAATGCTCAACGTTGCCAAAAGTTTGATGGATGCATATAAACTGAAAATATAGATAAATTTGAAAAAAGGTCTAGATGTAGAAAGCGAATCAAAATATACTTTCAACTTTGACCCCACATACCTAGGTTCCTGTGAAAGATATCAAAAAATTGTCAACTAACGAAATATTTTTGATATTATGATAAAAATATTGTCAGTGGACTACTTTTTGATATCTTTTACATGAAATGAGATATATGAGCTCAAACGGGTCGGGGGCGTTCTATTAGAGTGTTTACAGTAACTTGCTCTGATGTTGGCTA</canonical_amplicon>
		<polymorphic_amplicon>GCAAATACTGACAGAACTGAAAAAATGCTCAACGTTGCCAAAAGTTTGATGGATGCATATAAACTGAAAATATAGATAAATTTGAAAAAARGTCTAGATGTAGAAAGCGAATCAAAATATACTTTCAACTTTGACCCCACATACCTAGGTTCCTGTGAAAGATATCAAAAAATTGTCAACTAACGAAATATTTTTGATATTATGATAAAAATATTGTCAGTGGACTACTTTTTGATATCTTTTACATGAAATGAGATATATGAGCTCAAACGGGTCGGGGGCGTTCTATTAGAGTGTTTACAGTAACTTGCTCTGATGTTGGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30816</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>426920</contig_pos>
        <strand></strand>
        <context>atatcaaaaa[A/G]ttgtcaacta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTCAACTTTGACCCCACATACCTAGGTTCCTGTGAAAGATATCAAAAA</left_flank>
        <right_flank>TTGTCAACTAACGAAATATTTTTGATATTATGATAAAAATATTGTCAGTG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCTCGAAAGTTTTGTGTGTCCCAACTCTTTTCATCAGAAGTCTTGTCATCAGAAGACAATGGTCAAGTATGCCACAACTGGCGGTGCGCGTCTTTTGAGTCCTTTTGAGGTCCTCCTCTTCAACTTGTGCCTTCCAAAAAGAGAGATGAGGAATAAAAGCAGAAGTGGTGATTGTAAAAGGAAAAGAACAAAGTTTCGAGAGAGTGAGGTGCTCCGTGAGCACTGAACAGTTAGATCCAAGAAATCCAACCGGAAGTTATTGAGAGGGAAATATAAGAATAGTGGTGCACCTGAAGATTTGGGTCTATCCCTGGAAGGAAAGTTCGGCAAATACTGACAGAACTGAAAAAATGCTCAACGTTGCCAAAAGTTTGATGGATGCATATAAACTGAAAATATAGATAAATTTGAAAAAAGGTCTAGATGTAGAAAGCGAATCAAAATATACTTTCAACTTTGACCCCACATACCTAGGTTCCTGTGAAAGATATCAAAAAATTGTCAACTAACGAAATATTTTTGATATTATGATAAAAATATTGTCAGTGGACTACTTTTTGATATCTTTTACATGAAATGAGATATATGAGCTCAAACGGGTCGGGGGCGTTCTATTAGAGTGTTTACAGTAACTTGCTCTGATGTTGGCTATCATAATTATCAACGTTGTGATTCAGAAACCATTAAAAAAACGGTCGATGCCTGTCTCTCCAGAAATACTCATCTCTCTATAAGCATCAATTAAACGTAGTCTCCGAAAAAAGAGCATAATGATTAGGTTGAACGGTAGCTTGAAAAGAACCGGGAGGATCTTATCTAGGTCGCACAGTAGCCCACCTGTTCAATATTTGCAAAACAGCTGAAAAAAAACCGAAAAAATCAAAGGGGCGTGGCTTCTTGACATCGCTTTCAACTACAGTAATCCTCCTCGCCTTCGCCTAGCCGTAGGTCGTCAGTGGTGGTCGCGCCGGCTCCGCCCCCGTTGACGTGACTCTCCA</canonical>
            <polymorphic>TTCCTCGAAAGTTTTGTGTGTCCCAACTCTTTTCATCAGAAGTCTTGTCATCAGAAGACAATGGTCAAGTATGCCACAACTGGCGGTGCGCGTCTTTTGAGTCCTTTTGAGGTCCTCCTCTTCAACTTGTGCCTTCCAAAAAGAGAGATGAGGAATAAAAGCAGAAGTGGTGATTGTAAAAGGAAAAGAACAAAGTTTCGAGAGAGTGAGGTGCTCCGTGAGCACTGAACAGTTAGATCCAAGAAATCCAACCGGAAGTTATTGAGAGGGAAATATAAGAATAGTGGTGCACCTGAAGATTTGGGTCTATCCCTGGAAGGAAAGTTCGGCAAATACTGACAGAACTGAAAAAATGCTCAACGTTGCCAAAAGTTTGATGGATGCATATAAACTGAAAATATAGATAAATTTGAAAAAAGGTCTAGATGTAGAAAGCGAATCAAAATATACTTTCAACTTTGACCCCACATACCTAGGTTCCTGTGAAAGATATCAAAAARTTGTCAACTAACGAAATATTTTTGATATTATGATAAAAATATTGTCAGTGGACTACTTTTTGATATCTTTTACATGAAATGAGATATATGAGCTCAAACGGGTCGGGGGCGTTCTATTAGAGTGTTTACAGTAACTTGCTCTGATGTTGGCTATCATAATTATCAACGTTGTGATTCAGAAACCATTAAAAAAACGGTCGATGCCTGTCTCTCCAGAAATACTCATCTCTCTATAAGCATCAATTAAACGTAGTCTCCGAAAAAAGAGCATAATGATTAGGTTGAACGGTAGCTTGAAAAGAACCGGGAGGATCTTATCTAGGTCGCACAGTAGCCCACCTGTTCAATATTTGCAAAACAGCTGAAAAAAAACCGAAAAAATCAAAGGGGCGTGGCTTCTTGACATCGCTTTCAACTACAGTAATCCTCCTCGCCTTCGCCTAGCCGTAGGTCGTCAGTGGTGGTCGCGCCGGCTCCGCCCCCGTTGACGTGACTCTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>406 259 159 92 84</canonical_bands>
                <polymorphic_bands>406 259 251 84</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTAGATGTAGAAAGCGAATCA</pcr_primer_p1>
		<pcr_primer_p2>AATTATGATAGCCAACATCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTCTAGATGTAGAAAGCGAATCAAAATATACTTTCAACTTTGACCCCACATACCTAGGTTCCTGTGAAAGATATCAAAAAATTGTCAACTAACGAAATATTTTTGATATTATGATAAAAATATTGTCAGTGGACTACTTTTTGATATCTTTTACATGAAATGAGATATATGAGCTCAAACGGGTCGGGGGCGTTCTATTAGAGTGTTTACAGTAACTTGCTCTGATGTTGGCTATCATAATT</canonical_amplicon>
		<polymorphic_amplicon>GTCTAGATGTAGAAAGCGAATCAAAATATACTTTCAACTTTGACCCCACATACCTAGGTTCCTGTGAAAGATATCAAAAARTTGTCAACTAACGAAATATTTTTGATATTATGATAAAAATATTGTCAGTGGACTACTTTTTGATATCTTTTACATGAAATGAGATATATGAGCTCAAACGGGTCGGGGGCGTTCTATTAGAGTGTTTACAGTAACTTGCTCTGATGTTGGCTATCATAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30817</snp_id>
        <super_contig>c005600408.Contig5</super_contig>
        <contig_pos>435913</contig_pos>
        <strand>+</strand>
        <context>AGCTAAGGAT[C/T]CCATATTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGCAAGTAGAAGAATCTGATGCACAAAACTTCGCTCGAAAGCTAAGGAT</left_flank>
        <right_flank>CCATATTTTGAAACCAGTGCTCGACTGAACCAAAATGTCTCAGAGGTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATTTTCTTTTCCGACTTGTTTGGGGAAAAATAACAGAAAACTCGCCGAAAAGCATTGGAAAAGAGAAAATAAATCCAGAAAATAAAACTATTATTATGTCACTGTAGTTGTTGTTGTCGGAAGTTTGGCCACGGCCACCATTATTTCTCTTCCACCGCTCAGGTTTTTTTATACCAAAATAATACAGTACTTACCGTAATCACAACAATTTTTTCTAGGAGCAATTCACCGGAATGCGTGAAACATACTACCGAACAGCACAGGGATTCGTCCTCGTCTTCTCCTTGGCTGAAACTTCTACATTCGAAAACTTGAAACAGACTTTTCTAGATATTTTGACGATTCGCGGAGAAGATGTGAGATAAAAGCAGCTATGGAAGCTGATAAATTTGATTACTTAGGTTCCAATGGTTCTAGTGGGGAATAAGTCCGATTTGGCAGAAACCAGGCAAGTAGAAGAATCTGATGCACAAAACTTCGCTCGAAAGCTAAGGATTCCATATTTTGAAACCAGTGCTCGACTGAACCAAAATGTCTCAGAGGTTTGAAAACTACATGAGGAGTACCTCAATGATTCGATTTAGGTTTTCGAGGAGTGTGCTGTATTAATTCAGAAAATTGGTAAAAGTCAAAGTGAACGTCGACGATGGTCTTCTGAATCCGAAATTGGAGATAAAAAATGTAAAAATTGGTTGAGATCTTGCTGTTGTTGTCTTATTCCGTGTTTCACTACTGATTAGAAATACCTTTCTACTCGTTCTATGAAAAAAAAACAACAAAAACAACGCATTTGAGATTCAGAAAATTAAACGACGGTTGCCCATTCTTCGCTGACTGATCTGGCGACGACGACTCCTACACCGAATCCGATTACTCCCTTGAAGACGCTCCTGGAAAAAAGATTTTTATTTAATAATTGTAGCATTAATAAAAAGTACCAGAAGAATGGATCGTTGTATACTGTGTTGACGATTTCGAAGCGAGTCTTTAGCGGTGG</canonical>
            <polymorphic>AAAATTTTCTTTTCCGACTTGTTTGGGGAAAAATAACAGAAAACTCGCCGAAAAGCATTGGAAAAGAGAAAATAAATCCAGAAAATAAAACTATTATTATGTCACTGTAGTTGTTGTTGTCGGAAGTTTGGCCACGGCCACCATTATTTCTCTTCCACCGCTCAGGTTTTTTTATACCAAAATAATACAGTACTTACCGTAATCACAACAATTTTTTCTAGGAGCAATTCACCGGAATGCGTGAAACATACTACCGAACAGCACAGGGATTCGTCCTCGTCTTCTCCTTGGCTGAAACTTCTACATTCGAAAACTTGAAACAGACTTTTCTAGATATTTTGACGATTCGCGGAGAAGATGTGAGATAAAAGCAGCTATGGAAGCTGATAAATTTGATTACTTAGGTTCCAATGGTTCTAGTGGGGAATAAGTCCGATTTGGCAGAAACCAGGCAAGTAGAAGAATCTGATGCACAAAACTTCGCTCGAAAGCTAAGGATYCCATATTTTGAAACCAGTGCTCGACTGAACCAAAATGTCTCAGAGGTTTGAAAACTACATGAGGAGTACCTCAATGATTCGATTTAGGTTTTCGAGGAGTGTGCTGTATTAATTCAGAAAATTGGTAAAAGTCAAAGTGAACGTCGACGATGGTCTTCTGAATCCGAAATTGGAGATAAAAAATGTAAAAATTGGTTGAGATCTTGCTGTTGTTGTCTTATTCCGTGTTTCACTACTGATTAGAAATACCTTTCTACTCGTTCTATGAAAAAAAAACAACAAAAACAACGCATTTGAGATTCAGAAAATTAAACGACGGTTGCCCATTCTTCGCTGACTGATCTGGCGACGACGACTCCTACACCGAATCCGATTACTCCCTTGAAGACGCTCCTGGAAAAAAGATTTTTATTTAATAATTGTAGCATTAATAAAAAGTACCAGAAGAATGGATCGTTGTATACTGTGTTGACGATTTCGAAGCGAGTCTTTAGCGGTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>268 138 119 118 84 79 76 56 35 15 12</canonical_bands>
                <polymorphic_bands>268 138 119 118 114 84 76 56 15 12</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>268 138 134 118 84 79 76 68 35</canonical_bands>
                <polymorphic_bands>268 138 134 118 114 84 76 68</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTACTTAGGTTCCAATGGTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTCACTTTGACTTTTACCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTACTTAGGTTCCAATGGTTCTAGTGGGGAATAAGTCCGATTTGGCAGAAACCAGGCAAGTAGAAGAATCTGATGCACAAAACTTCGCTCGAAAGCTAAGGATTCCATATTTTGAAACCAGTGCTCGACTGAACCAAAATGTCTCAGAGGTTTGAAAACTACATGAGGAGTACCTCAATGATTCGATTTAGGTTTTCGAGGAGTGTGCTGTATTAATTCAGAAAATTGGTAAAAGTCAAAGTGAA</canonical_amplicon>
		<polymorphic_amplicon>ATTACTTAGGTTCCAATGGTTCTAGTGGGGAATAAGTCCGATTTGGCAGAAACCAGGCAAGTAGAAGAATCTGATGCACAAAACTTCGCTCGAAAGCTAAGGATYCCATATTTTGAAACCAGTGCTCGACTGAACCAAAATGTCTCAGAGGTTTGAAAACTACATGAGGAGTACCTCAATGATTCGATTTAGGTTTTCGAGGAGTGTGCTGTATTAATTCAGAAAATTGGTAAAAGTCAAAGTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30818</snp_id>
        <super_contig>c005600499.Contig1</super_contig>
        <contig_pos>16010</contig_pos>
        <strand></strand>
        <context>AACCACAGCC[G/A]CCTCAACGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGGGATCGAATGGTCCCGCCCCTTTACCAGCAGCCGTGGCAACCACAGCC</left_flank>
        <right_flank>CCTCAACGATATCACATCCGCATATCAACAATCATCATGCCTCGAGAATC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAAAAGCCCATCCAATCCCGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATAACAAGGATTTCCAACTGATGAAATATTTACCACAGTATGGACTATATTTTATCAGTTGAAAGACTTCCGCTACCTCTGATAGCGACCGAGATAATTGTCCTCAAAGTTATAAGTTAGGAGGCCCTTCTATTAGAGAAAAACAGAAACTGATAAGCGACCCCCTTAACACTGTAATCATTTCAGAATGGGATCACACTGGCTGTCAGGAGAGGAGCGTTCTCGTCTCGAAGCGGTTCAACAGGATTGGCGTCGGACGAGGCCTATGAAAGTGAGTTTTCTATCACCTACAGTACCCTAACTCGTCTAATCAGCCTGTTCAGTTTCAGTGGGGTACCAAACCGAGGCGGTCGGATGATCCAGTGTTACCAGCCGCACCGGATGTCCCATCGGGATCGAATGGTCCCGCCCCTTTACCAGCAGCCGTGGCAACCACAGCCGCCTCAACGATATCACATCCGCATATCAACAATCATCATGCCTCGAGAATCCCTCAGGCGATTACGAATGGAACGACGACGCCGTTGGCACCTCTTCTGATATCACCGACGGGTCAAACGGCGACACCGTTAGTGAAGACGGGCCCGATGTCACCGTCAAAGGGAAGTCCGATTAATGTGGCGGCTACAGTATTACAGAATGCAGTGTCAAGTCCACAACATAGTATATTTGACAGATCTAGGTGAGTTTCTATATTTTTGCATGGTGGCCTAACTTTTGCAAGTTAAGTTTGCTAGGCCACCAACTTTTATAACCTAGAAATAGTCTGACATTCACCTGGTAGATTTTCTATGCCATTTTAAAATGGTGGCCTCAACAACTCAAAATGCGAAAGTTAGGCCACCATGTTGCAAATTGAGTTTTCTAGGCCACCACGTTAAAATGACCTAGAATCGGTCTAATATTCACCTGGAGTATTTCTAGGTGATTTTAGCACGGTG</canonical>
            <polymorphic>AATAAAAGCCCATCCAATCCCGTCAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATAACAAGGATTTCCAACTGATGAAATATTTACCACAGTATGGACTATATTTTATCAGTTGAAAGACTTCCGCTACCTCTGATAGCGACCGAGATAATTGTCCTCAAAGTTATAAGTTAGGAGGCCCTTCTATTAGAGAAAAACAGAAACTGATAAGCGACCCCCTTAACACTGTAATCATTTCAGAATGGGATCACACTGGCTGTCAGGAGAGGAGCGTTCTCGTCTCGAAGCGGTTCAACAGGATTGGCGTCGGACGAGGCCTATGAAAGTGAGTTTTCTATCACCTACAGTACCCTAACTCGTCTAATCAGCCTGTTCAGTTTCAGTGGGGTACCAAACCGAGGCGGTCGGATGATCCAGTGTTACCAGCCGCACCGGATGTCCCATCGGGATCGAATGGTCCCGCCCCTTTACCAGCAGCCGTGGCAACCACAGCCRCCTCAACGATATCACATCCGCATATCAACAATCATCATGCCTCGAGAATCCCTCAGGCGATTACGAATGGAACGACGACGCCGTTGGCACCTCTTCTGATATCACCGACGGGTCAAACGGCGACACCGTTAGTGAAGACGGGCCCGATGTCACCGTCAAAGGGAAGTCCGATTAATGTGGCGGCTACAGTATTACAGAATGCAGTGTCAAGTCCACAACATAGTATATTTGACAGATCTAGGTGAGTTTCTATATTTTTGCATGGTGGCCTAACTTTTGCAAGTTAAGTTTGCTAGGCCACCAACTTTTATAACCTAGAAATAGTCTGACATTCACCTGGTAGATTTTCTATGCCATTTTAAAATGGTGGCCTCAACAACTCAAAATGCGAAAGTTAGGCCACCATGTTGCAAATTGAGTTTTCTAGGCCACCACGTTAAAATGACCTAGAATCGGTCTAATATTCACCTGGAGTATTTCTAGGTGATTTTAGCACGGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>321 276 161 129 33 33 27 20</canonical_bands>
                <polymorphic_bands>321 276 161 129 53 33 27</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>434 317 183 48 18</canonical_bands>
                <polymorphic_bands>434 317 201 48</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>434 317 183 66</canonical_bands>
                <polymorphic_bands>434 317 249</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTAATCAGCCTGTTCAGTTT</pcr_primer_p1>
		<pcr_primer_p2>GTCGGTGATATCAGAAGAGGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTCTAATCAGCCTGTTCAGTTTCAGTGGGGTACCAAACCGAGGCGGTCGGATGATCCAGTGTTACCAGCCGCACCGGATGTCCCATCGGGATCGAATGGTCCCGCCCCTTTACCAGCAGCCGTGGCAACCACAGCCGCCTCAACGATATCACATCCGCATATCAACAATCATCATGCCTCGAGAATCCCTCAGGCGATTACGAATGGAACGACGACGCCGTTGGCACCTCTTCTGATATCACCGAC</canonical_amplicon>
		<polymorphic_amplicon>GTCTAATCAGCCTGTTCAGTTTCAGTGGGGTACCAAACCGAGGCGGTCGGATGATCCAGTGTTACCAGCCGCACCGGATGTCCCATCGGGATCGAATGGTCCCGCCCCTTTACCAGCAGCCGTGGCAACCACAGCCRCCTCAACGATATCACATCCGCATATCAACAATCATCATGCCTCGAGAATCCCTCAGGCGATTACGAATGGAACGACGACGCCGTTGGCACCTCTTCTGATATCACCGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30819</snp_id>
        <super_contig>c005600499.Contig1</super_contig>
        <contig_pos>132036</contig_pos>
        <strand>+</strand>
        <context>AGACGATMCA[A/G]GGATTAACAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCTGGCGTTGTTTCAACTAGTTTTATAGAGGTTTCTTTTAGACGATACA</left_flank>
        <right_flank>GGATTAACAATTATAATTAACAACAAATATTTTTAGTATCAGAAACTGGG</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTCAGGAGATATCGAAAATCTGTCAACTAATAAAATGTTTGGCATAATTTCATCAACATTTTATCAGTTGACAGATTTTTGATATCTCTAATAGGAGCCGAGTGTGGGCGCCTAAACAATGAAATGATGAGATACGCAGAGAACCGAGAGTGTCTCGCTTCTCTGGCGTTGTTTCAACTGGTTCTAAAGATGGGGAACAGATAGCAAACTTTATAATGAGAAATTATAGTTCACAAAAAATATGTGAAGTATCAGAAACTGGAATTTTTTAAATTCGATGGGCAAACCTTTAAATGATACCAAAAATCTGCTAACTAATAAAATGTTTGTTATAATATCATCAACATTTTATTAGTTGACAGATTTTCGATATCTGCAATAGGAACCGAGATAATTGAGCTCAAAGTGGGTGCGCACAAAAAAAAATGAAACGAGGGAGTTTCGTTTCTCTGGCGTTGTTTCAACTAGTTTTATAGAGGTTTCTTTTAGACGATACAGGGATTAACAATTATAATTAACAACAAATATTTTTAGTATCAGAAACTGGGAAATTTTTTGAATTTGATTGGTAAAAATTTCATAATTTCAAACTACATTGAAATATCGAAAATTCCAGTTTCAACAATTTGATAATATTTGATTAATGGGTTCCAACCTTTAATCATATAACCAGATATACTCACTTTACTCGACGAAAACCCGGACTCGATACTCCTTGTGGACCCATATGACGGTTGTTTCTTCATCATCAGAATTCCCGACGTCTTCTTCTTCTGCTGCTTCTTCTGGTCCTCTTCAGCCTCTTCTTCTATCCGAATCACCTCATCAAACTGTCTCATCACATCTCGCTGCTCCGCATCCAGCCAATCACTCATTCTTGTCCTCTTAATTCGAATCGATTCAGTTTTCCAATCGAGTTTCGGCACGGCAACCAACACGTGGCTTCCAGATGGTACAACGGCGATTAATTTTTTGTTATCTGATGGTGAGATAGTGGA</canonical>
            <polymorphic>CCTTCAGGAGATATCGAAAATCTGTCAACTAATAAAATGTTTGGCATAATTTCATCAACATTTTATCAGTTGACAGATTTTTGATATCTCTAATAGGAGCCGAGTGTGGGCGCCTAAACAATGAAATGATGAGATACGCAGAGAACCGAGAGTGTCTCGCTTCTCTGGCGTTGTTTCAACTGGTTCTAAAGATGGGGAACAGATAGCAAACTTTATAATGAGAAATTATAGTTCACAAAAAATATGTGAAGTATCAGAAACTGGAATTTTTTAAATTCGATGGGCAAACCTTTAAATGATACCAAAAATCTGCTAACTAATAAAATGTTTGTTATAATATCATCAACATTTTATTAGTTGACAGATTTTCGATATCTGCAATAGGAACCGAGATAATTGAGCTCAAAGTGGGTGCGCACAAAAAAAAATGAAACGAGGGAGTTTCGTTTCTCTGGCGTTGTTTCAACTAGTTTTATAGAGGTTTCTTTTAGACGATACARGGATTAACAATTATAATTAACAACAAATATTTTTAGTATCAGAAACTGGGAAATTTTTTGAATTTGATTGGTAAAAATTTCATAATTTCAAACTACATTGAAATATCGAAAATTCCAGTTTCAACAATTTGATAATATTTGATTAATGGGTTCCAACCTTTAATCATATAACCAGATATACTCACTTTACTCGACGAAAACCCGGACTCGATACTCCTTGTGGACCCATATGACGGTTGTTTCTTCATCATCAGAATTCCCGACGTCTTCTTCTTCTGCTGCTTCTTCTGGTCCTCTTCAGCCTCTTCTTCTATCCGAATCACCTCATCAAACTGTCTCATCACATCTCGCTGCTCCGCATCCAGCCAATCACTCATTCTTGTCCTCTTAATTCGAATCGATTCAGTTTTCCAATCGAGTTTCGGCACGGCAACCAACACGTGGCTTCCAGATGGTACAACGGCGATTAATTTTTTGTTATCTGATGGTGAGATAGTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGAAACGAGGGAGTT</pcr_primer_p1>
		<pcr_primer_p2>GTTGGAACCCATTAATCAAATA</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGAAACGAGGGAGTTTCGTTTCTCTGGCGTTGTTTCAACTAGTTTTATAGAGGTTTCTTTTAGACGATACAGGGATTAACAATTATAATTAACAACAAATATTTTTAGTATCAGAAACTGGGAAATTTTTTGAATTTGATTGGTAAAAATTTCATAATTTCAAACTACATTGAAATATCGAAAATTCCAGTTTCAACAATTTGATAATATTTGATTAATGGGTTCCAAC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGAAACGAGGGAGTTTCGTTTCTCTGGCGTTGTTTCAACTAGTTTTATAGAGGTTTCTTTTAGACGATACARGGATTAACAATTATAATTAACAACAAATATTTTTAGTATCAGAAACTGGGAAATTTTTTGAATTTGATTGGTAAAAATTTCATAATTTCAAACTACATTGAAATATCGAAAATTCCAGTTTCAACAATTTGATAATATTTGATTAATGGGTTCCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30820</snp_id>
        <super_contig>c005600499.Contig1</super_contig>
        <contig_pos>133080</contig_pos>
        <strand>+</strand>
        <context>ACTTTAACTT[C/T]TACAGAGTGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTCAGAAGACTTCAGAAGACGTTACTATCTCTAGGAATACTTTAACTT</left_flank>
        <right_flank>TACAGAGTGCAAAAATGATGGAAAACTGACTTATTGTTTGTCAAGATATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAAGATGTATTAGAAGAAGAAACAGAAGTTTTCTTCGACGATCGCCGACGAAGCGAGAGATTCGAGACGTAGGTTGGAGAACAAGTCGTCGTTTTCGTTTTCTTATGAGGTGCGAGACAGTTGTTGCAATCGAACGAATCAGCGGATGGCGCCGTAGCCCTCGACAACGACAATAATGAAGAATCCTTTGGCGCTGGGTCTGTTACTTGTCTCGCTGTCTGCGTCTCACGGAAAGTACACACTCGACGGATTGTCTCGATGTCTGCGTCTCGTCTGATCAACATCTCGTCTGATTTGTCATCGGTAATCCGTTGTGGTAAACGTGCGTAGATCAGCCAGAAATAGTAGACAAACGATGTATAAAGGTAGGTGATCCAAGTTATGATTGGCGATGGTTGGTGGCTAGTTTCGTTTCGATTTGGATTCGGATTATTAGTATTCGAATCCATTTCAGAAGACTTCAGAAGACGTTACTATCTCTAGGAATACTTTAACTTCTACAGAGTGCAAAAATGATGGAAAACTGACTTATTGTTTGTCAAGATATATAACTTTTCTCTATGCATAGTTTATTATGGGGGTTTTCTTCGCGCGAGCCCCATAAAAGACCCCTCTCTTCATATTTTTATCATCGCTTACATATGACAAATAGACCTCCCCTATTGTGTCGTCTTTAAGAAATGGAGAACCATTTTTTTCCTTTTTGGTTCGAGAAGAATAGAATGTGAGAATTGAGAAAAGGGAAGAAGAAGTGGAGGAATTCCGAGGAAAAAAAAAGTACAAGTGGACTATTGGTTGATCACTAATGTTCTTTTTCTTGCAAAGAAGACCCGTTAGTATGGAGAACGCAGATGTTCTTGGAATATAATGGGTCACTGAATTTTATGAGGTTGAGCAGCTGGGGATAGTGAAAATGAGGACCAATTGGATAATCTATATCGCATTGAAATTTGACATCGTTTGTACCTCTTCAGGAAAACATGAAACAGTAAAAGCTC</canonical>
            <polymorphic>AAGAAGATGTATTAGAAGAAGAAACAGAAGTTTTCTTCGACGATCGCCGACGAAGCGAGAGATTCGAGACGTAGGTTGGAGAACAAGTCGTCGTTTTCGTTTTCTTATGAGGTGCGAGACAGTTGTTGCAATCGAACGAATCAGCGGATGGCGCCGTAGCCCTCGACAACGACAATAATGAAGAATCCTTTGGCGCTGGGTCTGTTACTTGTCTCGCTGTCTGCGTCTCACGGAAAGTACACACTCGACGGATTGTCTCGATGTCTGCGTCTCGTCTGATCAACATCTCGTCTGATTTGTCATCGGTAATCCGTTGTGGTAAACGTGCGTAGATCAGCCAGAAATAGTAGACAAACGATGTATAAAGGTAGGTGATCCAAGTTATGATTGGCGATGGTTGGTGGCTAGTTTCGTTTCGATTTGGATTCGGATTATTAGTATTCGAATCCATTTCAGAAGACTTCAGAAGACGTTACTATCTCTAGGAATACTTTAACTTYTACAGAGTGCAAAAATGATGGAAAACTGACTTATTGTTTGTCAAGATATATAACTTTTCTCTATGCATAGTTTATTATGGGGGTTTTCTTCGCGCGAGCCCCATAAAAGACCCCTCTCTTCATATTTTTATCATCGCTTACATATGACAAATAGACCTCCCCTATTGTGTCGTCTTTAAGAAATGGAGAACCATTTTTTTCCTTTTTGGTTCGAGAAGAATAGAATGTGAGAATTGAGAAAAGGGAAGAAGAAGTGGAGGAATTCCGAGGAAAAAAAAAGTACAAGTGGACTATTGGTTGATCACTAATGTTCTTTTTCTTGCAAAGAAGACCCGTTAGTATGGAGAACGCAGATGTTCTTGGAATATAATGGGTCACTGAATTTTATGAGGTTGAGCAGCTGGGGATAGTGAAAATGAGGACCAATTGGATAATCTATATCGCATTGAAATTTGACATCGTTTGTACCTCTTCAGGAAAACATGAAACAGTAAAAGCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGTATTCGAATCCATTTCAGA</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTAAAGACGACACAATAGG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTAGTATTCGAATCCATTTCAGAAGACTTCAGAAGACGTTACTATCTCTAGGAATACTTTAACTTCTACAGAGTGCAAAAATGATGGAAAACTGACTTATTGTTTGTCAAGATATATAACTTTTCTCTATGCATAGTTTATTATGGGGGTTTTCTTCGCGCGAGCCCCATAAAAGACCCCTCTCTTCATATTTTTATCATCGCTTACATATGACAAATAGACCTCCCCTATTGTGTCGTCTTTAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TTAGTATTCGAATCCATTTCAGAAGACTTCAGAAGACGTTACTATCTCTAGGAATACTTTAACTTYTACAGAGTGCAAAAATGATGGAAAACTGACTTATTGTTTGTCAAGATATATAACTTTTCTCTATGCATAGTTTATTATGGGGGTTTTCTTCGCGCGAGCCCCATAAAAGACCCCTCTCTTCATATTTTTATCATCGCTTACATATGACAAATAGACCTCCCCTATTGTGTCGTCTTTAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30821</snp_id>
        <super_contig>c005600499.Contig1</super_contig>
        <contig_pos>172025</contig_pos>
        <strand></strand>
        <context>GTACTTTTTG[T/G]aattttttaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AAAATTTCGAAAACTCAAATTTTCGATTTTTTGAAATTTTGTACTTTTTG</left_flank>
        <right_flank>AATTTTTTAAAATTTAAAAATTTTTAGATTTTTTTTTAGAAAAACCGAAA</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTGTAGTTTTCGTTTTCGGACCATTTCTATAACAAAAAAAAATCTTACATCACAAATGATCAATTTCGCCAGCCAATCCAGCACAATAATCAGCTCGGATTCCAACGGCGGCATTCCCAATGCCTCATGAAATCGATAAGCGTGAAAACGAGAGAAACTGTAGCCAGAGGGATTGATGAAACTAGTGAACCAAAGTGCATCAAAAGCCGGATTCCTCATGACATCTGGATAATAAATTTGGTGTTGAAGGGACATTCGGGTTCCTTGTTGGTTTATGATTGGGGAGTATCGAGCGACATCGTGATACAGTAGTCGACACGTTTCATCTTGGAAGTAGAGATTGTGAAAGTAGTAGAGGAATTCGTTATTGAAATGCGTTCGATTGATGTCGGGGTGGGGCTGAAAATTAACGAAAAATTCATAATTTTCGAAAATCGGAATTTCCATAAAATTTCGAAAACTCAAATTTTCGATTTTTTGAAATTTTGTACTTTTTGTAATTTTTTAAAATTTAAAAATTTTTAGATTTTTTTTTAGAAAAACCGAAAAATCCGAAATTTCAAAAAATACAAAAATCTGAAATTTTCGAAAATCGGAATTTCCAAAAAGGCGAAAAATTCGGAAATTTAAAAAACTGAAAAATCGAAAAAAACCAAAAAATAATCGAAAAATCGAAAAATTCCGAAAAATTCGGAATATTCAGTTTTATTGGAAATTCTGAATTTCGGATTTTCTGGAAATTTTTGATTTTTTGAGATTTTTTTTTCGAAAATTTGCATCTTCAAAAGTGTCAAAACCTTACCAGAAATTTCTGAAGAAACATGTGAAACCTCAACGGATTCCTGGAGATCAGTTCGTGAACGTCTATTCGATTGATTTGTCTGAAAACTTCTTTTTTACCTTTTTAACTTTTCAAAATTTCCAAATTACCGCCGATTATGTGTTATGGCACGATGATACATGAAATTACAGTACGCCACCAGAGTTTTCATTGTTCT</canonical>
            <polymorphic>TACTGTAGTTTTCGTTTTCGGACCATTTCTATAACAAAAAAAAATCTTACATCACAAATGATCAATTTCGCCAGCCAATCCAGCACAATAATCAGCTCGGATTCCAACGGCGGCATTCCCAATGCCTCATGAAATCGATAAGCGTGAAAACGAGAGAAACTGTAGCCAGAGGGATTGATGAAACTAGTGAACCAAAGTGCATCAAAAGCCGGATTCCTCATGACATCTGGATAATAAATTTGGTGTTGAAGGGACATTCGGGTTCCTTGTTGGTTTATGATTGGGGAGTATCGAGCGACATCGTGATACAGTAGTCGACACGTTTCATCTTGGAAGTAGAGATTGTGAAAGTAGTAGAGGAATTCGTTATTGAAATGCGTTCGATTGATGTCGGGGTGGGGCTGAAAATTAACGAAAAATTCATAATTTTCGAAAATCGGAATTTCCATAAAATTTCGAAAACTCAAATTTTCGATTTTTTGAAATTTTGTACTTTTTGKAATTTTTTAAAATTTAAAAATTTTTAGATTTTTTTTTAGAAAAACCGAAAAATCCGAAATTTCAAAAAATACAAAAATCTGAAATTTTCGAAAATCGGAATTTCCAAAAAGGCGAAAAATTCGGAAATTTAAAAAACTGAAAAATCGAAAAAAACCAAAAAATAATCGAAAAATCGAAAAATTCCGAAAAATTCGGAATATTCAGTTTTATTGGAAATTCTGAATTTCGGATTTTCTGGAAATTTTTGATTTTTTGAGATTTTTTTTTCGAAAATTTGCATCTTCAAAAGTGTCAAAACCTTACCAGAAATTTCTGAAGAAACATGTGAAACCTCAACGGATTCCTGGAGATCAGTTCGTGAACGTCTATTCGATTGATTTGTCTGAAAACTTCTTTTTTACCTTTTTAACTTTTCAAAATTTCCAAATTACCGCCGATTATGTGTTATGGCACGATGATACATGAAATTACAGTACGCCACCAGAGTTTTCATTGTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCGGAATTTCCATAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAGAATTTCCAATAAAACTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>290</pcr_amplicon_size>
		<canonical_amplicon>AAAATCGGAATTTCCATAAAATTTCGAAAACTCAAATTTTCGATTTTTTGAAATTTTGTACTTTTTGTAATTTTTTAAAATTTAAAAATTTTTAGATTTTTTTTTAGAAAAACCGAAAAATCCGAAATTTCAAAAAATACAAAAATCTGAAATTTTCGAAAATCGGAATTTCCAAAAAGGCGAAAAATTCGGAAATTTAAAAAACTGAAAAATCGAAAAAAACCAAAAAATAATCGAAAAATCGAAAAATTCCGAAAAATTCGGAATATTCAGTTTTATTGGAAATTCTG</canonical_amplicon>
		<polymorphic_amplicon>AAAATCGGAATTTCCATAAAATTTCGAAAACTCAAATTTTCGATTTTTTGAAATTTTGTACTTTTTGKAATTTTTTAAAATTTAAAAATTTTTAGATTTTTTTTTAGAAAAACCGAAAAATCCGAAATTTCAAAAAATACAAAAATCTGAAATTTTCGAAAATCGGAATTTCCAAAAAGGCGAAAAATTCGGAAATTTAAAAAACTGAAAAATCGAAAAAAACCAAAAAATAATCGAAAAATCGAAAAATTCCGAAAAATTCGGAATATTCAGTTTTATTGGAAATTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30822</snp_id>
        <super_contig>c005600499.Contig1</super_contig>
        <contig_pos>172106</contig_pos>
        <strand></strand>
        <context>ACAAAAATCT[G/A]AAATTTTCGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTTTTAGAAAAACCGAAAAATCCGAAATTTCAAAAAATACAAAAATCT</left_flank>
        <right_flank>AAATTTTCGAAAATCGGAATTTCCAAAAAGGCGAAAAATTCGGAAATTTA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCACAATAATCAGCTCGGATTCCAACGGCGGCATTCCCAATGCCTCATGAAATCGATAAGCGTGAAAACGAGAGAAACTGTAGCCAGAGGGATTGATGAAACTAGTGAACCAAAGTGCATCAAAAGCCGGATTCCTCATGACATCTGGATAATAAATTTGGTGTTGAAGGGACATTCGGGTTCCTTGTTGGTTTATGATTGGGGAGTATCGAGCGACATCGTGATACAGTAGTCGACACGTTTCATCTTGGAAGTAGAGATTGTGAAAGTAGTAGAGGAATTCGTTATTGAAATGCGTTCGATTGATGTCGGGGTGGGGCTGAAAATTAACGAAAAATTCATAATTTTCGAAAATCGGAATTTCCATAAAATTTCGAAAACTCAAATTTTCGATTTTTTGAAATTTTGTACTTTTTGTAATTTTTTAAAATTTAAAAATTTTTAGATTTTTTTTTAGAAAAACCGAAAAATCCGAAATTTCAAAAAATACAAAAATCTGAAATTTTCGAAAATCGGAATTTCCAAAAAGGCGAAAAATTCGGAAATTTAAAAAACTGAAAAATCGAAAAAAACCAAAAAATAATCGAAAAATCGAAAAATTCCGAAAAATTCGGAATATTCAGTTTTATTGGAAATTCTGAATTTCGGATTTTCTGGAAATTTTTGATTTTTTGAGATTTTTTTTTCGAAAATTTGCATCTTCAAAAGTGTCAAAACCTTACCAGAAATTTCTGAAGAAACATGTGAAACCTCAACGGATTCCTGGAGATCAGTTCGTGAACGTCTATTCGATTGATTTGTCTGAAAACTTCTTTTTTACCTTTTTAACTTTTCAAAATTTCCAAATTACCGCCGATTATGTGTTATGGCACGATGATACATGAAATTACAGTACGCCACCAGAGTTTTCATTGTTCTTTGAAACACGAAAAGTGTGATTTTTTCGTTGCTCAAAAGGGCGGCACCAGCACAGAATGTGAGGGTTGATGTGATTTGGAG</canonical>
            <polymorphic>AGCACAATAATCAGCTCGGATTCCAACGGCGGCATTCCCAATGCCTCATGAAATCGATAAGCGTGAAAACGAGAGAAACTGTAGCCAGAGGGATTGATGAAACTAGTGAACCAAAGTGCATCAAAAGCCGGATTCCTCATGACATCTGGATAATAAATTTGGTGTTGAAGGGACATTCGGGTTCCTTGTTGGTTTATGATTGGGGAGTATCGAGCGACATCGTGATACAGTAGTCGACACGTTTCATCTTGGAAGTAGAGATTGTGAAAGTAGTAGAGGAATTCGTTATTGAAATGCGTTCGATTGATGTCGGGGTGGGGCTGAAAATTAACGAAAAATTCATAATTTTCGAAAATCGGAATTTCCATAAAATTTCGAAAACTCAAATTTTCGATTTTTTGAAATTTTGTACTTTTTGTAATTTTTTAAAATTTAAAAATTTTTAGATTTTTTTTTAGAAAAACCGAAAAATCCGAAATTTCAAAAAATACAAAAATCTRAAATTTTCGAAAATCGGAATTTCCAAAAAGGCGAAAAATTCGGAAATTTAAAAAACTGAAAAATCGAAAAAAACCAAAAAATAATCGAAAAATCGAAAAATTCCGAAAAATTCGGAATATTCAGTTTTATTGGAAATTCTGAATTTCGGATTTTCTGGAAATTTTTGATTTTTTGAGATTTTTTTTTCGAAAATTTGCATCTTCAAAAGTGTCAAAACCTTACCAGAAATTTCTGAAGAAACATGTGAAACCTCAACGGATTCCTGGAGATCAGTTCGTGAACGTCTATTCGATTGATTTGTCTGAAAACTTCTTTTTTACCTTTTTAACTTTTCAAAATTTCCAAATTACCGCCGATTATGTGTTATGGCACGATGATACATGAAATTACAGTACGCCACCAGAGTTTTCATTGTTCTTTGAAACACGAAAAGTGTGATTTTTTCGTTGCTCAAAAGGGCGGCACCAGCACAGAATGTGAGGGTTGATGTGATTTGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>340 196 116 86 70 62 26 26 25 18 17 10 8</canonical_bands>
                <polymorphic_bands>340 196 116 86 70 62 42 26 26 18 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATCGGAATTTCCATAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAGAATTTCCAATAAAACTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>290</pcr_amplicon_size>
		<canonical_amplicon>AAAATCGGAATTTCCATAAAATTTCGAAAACTCAAATTTTCGATTTTTTGAAATTTTGTACTTTTTGTAATTTTTTAAAATTTAAAAATTTTTAGATTTTTTTTTAGAAAAACCGAAAAATCCGAAATTTCAAAAAATACAAAAATCTGAAATTTTCGAAAATCGGAATTTCCAAAAAGGCGAAAAATTCGGAAATTTAAAAAACTGAAAAATCGAAAAAAACCAAAAAATAATCGAAAAATCGAAAAATTCCGAAAAATTCGGAATATTCAGTTTTATTGGAAATTCTG</canonical_amplicon>
		<polymorphic_amplicon>AAAATCGGAATTTCCATAAAATTTCGAAAACTCAAATTTTCGATTTTTTGAAATTTTGTACTTTTTGTAATTTTTTAAAATTTAAAAATTTTTAGATTTTTTTTTAGAAAAACCGAAAAATCCGAAATTTCAAAAAATACAAAAATCTRAAATTTTCGAAAATCGGAATTTCCAAAAAGGCGAAAAATTCGGAAATTTAAAAAACTGAAAAATCGAAAAAAACCAAAAAATAATCGAAAAATCGAAAAATTCCGAAAAATTCGGAATATTCAGTTTTATTGGAAATTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30823</snp_id>
        <super_contig>c005600499.Contig1</super_contig>
        <contig_pos>172268</contig_pos>
        <strand>+</strand>
        <context>TTTCTGGAAA[A/C]TTTTGATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCGGAATATTCAGTTTTATTGGAAATTCTGAATTTCGGATTTTCTGGAAA</left_flank>
        <right_flank>TTTTGATTTTTTGAGATTTTTTTTTCGAAAATTTGCATCTTCAAAAGTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTGAAGGGACATTCGGGTTCCTTGTTGGTTTATGATTGGGGAGTATCGAGCGACATCGTGATACAGTAGTCGACACGTTTCATCTTGGAAGTAGAGATTGTGAAAGTAGTAGAGGAATTCGTTATTGAAATGCGTTCGATTGATGTCGGGGTGGGGCTGAAAATTAACGAAAAATTCATAATTTTCGAAAATCGGAATTTCCATAAAATTTCGAAAACTCAAATTTTCGATTTTTTGAAATTTTGTACTTTTTGTAATTTTTTAAAATTTAAAAATTTTTAGATTTTTTTTTAGAAAAACCGAAAAATCCGAAATTTCAAAAAATACAAAAATCTGAAATTTTCGAAAATCGGAATTTCCAAAAAGGCGAAAAATTCGGAAATTTAAAAAACTGAAAAATCGAAAAAAACCAAAAAATAATCGAAAAATCGAAAAATTCCGAAAAATTCGGAATATTCAGTTTTATTGGAAATTCTGAATTTCGGATTTTCTGGAAATTTTTGATTTTTTGAGATTTTTTTTTCGAAAATTTGCATCTTCAAAAGTGTCAAAACCTTACCAGAAATTTCTGAAGAAACATGTGAAACCTCAACGGATTCCTGGAGATCAGTTCGTGAACGTCTATTCGATTGATTTGTCTGAAAACTTCTTTTTTACCTTTTTAACTTTTCAAAATTTCCAAATTACCGCCGATTATGTGTTATGGCACGATGATACATGAAATTACAGTACGCCACCAGAGTTTTCATTGTTCTTTGAAACACGAAAAGTGTGATTTTTTCGTTGCTCAAAAGGGCGGCACCAGCACAGAATGTGAGGGTTGATGTGATTTGGAGAAACGTCTCTCGTGGCCATTCGTCGATTCGGAAAATGTTTTCGTCTGGAAATCTGACAGGATTTGCAGAGAATTTCATGGATGTTGATTTGGCGGGAATTCAAAATTTCGAATCTTTGGATTTTTAAATTTAGAAATTTTTGTCTTTTTTGAATCTTTCAAA</canonical>
            <polymorphic>TGTTGAAGGGACATTCGGGTTCCTTGTTGGTTTATGATTGGGGAGTATCGAGCGACATCGTGATACAGTAGTCGACACGTTTCATCTTGGAAGTAGAGATTGTGAAAGTAGTAGAGGAATTCGTTATTGAAATGCGTTCGATTGATGTCGGGGTGGGGCTGAAAATTAACGAAAAATTCATAATTTTCGAAAATCGGAATTTCCATAAAATTTCGAAAACTCAAATTTTCGATTTTTTGAAATTTTGTACTTTTTGTAATTTTTTAAAATTTAAAAATTTTTAGATTTTTTTTTAGAAAAACCGAAAAATCCGAAATTTCAAAAAATACAAAAATCTGAAATTTTCGAAAATCGGAATTTCCAAAAAGGCGAAAAATTCGGAAATTTAAAAAACTGAAAAATCGAAAAAAACCAAAAAATAATCGAAAAATCGAAAAATTCCGAAAAATTCGGAATATTCAGTTTTATTGGAAATTCTGAATTTCGGATTTTCTGGAAAMTTTTGATTTTTTGAGATTTTTTTTTCGAAAATTTGCATCTTCAAAAGTGTCAAAACCTTACCAGAAATTTCTGAAGAAACATGTGAAACCTCAACGGATTCCTGGAGATCAGTTCGTGAACGTCTATTCGATTGATTTGTCTGAAAACTTCTTTTTTACCTTTTTAACTTTTCAAAATTTCCAAATTACCGCCGATTATGTGTTATGGCACGATGATACATGAAATTACAGTACGCCACCAGAGTTTTCATTGTTCTTTGAAACACGAAAAGTGTGATTTTTTCGTTGCTCAAAAGGGCGGCACCAGCACAGAATGTGAGGGTTGATGTGATTTGGAGAAACGTCTCTCGTGGCCATTCGTCGATTCGGAAAATGTTTTCGTCTGGAAATCTGACAGGATTTGCAGAGAATTTCATGGATGTTGATTTGGCGGGAATTCAAAATTTCGAATCTTTGGATTTTTAAATTTAGAAATTTTTGTCTTTTTTGAATCTTTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>233 117 110 57 54 39 36 32 28 27 26 26 25 23 23 19 18 17 16 15 11 10 8 8 8 7 7</canonical_bands>
                <polymorphic_bands>233 117 110 57 54 50 39 36 28 27 26 26 25 23 23 19 17 16 15 11 10 8 8 8 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>185 117 110 54 46 40 39 36 32 28 26 26 25 23 19 18 17 17 16 16 15 11 11 10 10 8 8 8 8 7 7 7</canonical_bands>
                <polymorphic_bands>185 117 110 54 50 46 40 39 36 28 26 26 25 23 19 17 17 16 16 15 11 11 10 10 8 8 8 8 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCGGAATTTCCAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>GTTGAGGTTTCACATGTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATCGGAATTTCCAAAAAGGCGAAAAATTCGGAAATTTAAAAAACTGAAAAATCGAAAAAAACCAAAAAATAATCGAAAAATCGAAAAATTCCGAAAAATTCGGAATATTCAGTTTTATTGGAAATTCTGAATTTCGGATTTTCTGGAAATTTTTGATTTTTTGAGATTTTTTTTTCGAAAATTTGCATCTTCAAAAGTGTCAAAACCTTACCAGAAATTTCTGAAGAAACATGTGAAACCTCAAC</canonical_amplicon>
		<polymorphic_amplicon>AAATCGGAATTTCCAAAAAGGCGAAAAATTCGGAAATTTAAAAAACTGAAAAATCGAAAAAAACCAAAAAATAATCGAAAAATCGAAAAATTCCGAAAAATTCGGAATATTCAGTTTTATTGGAAATTCTGAATTTCGGATTTTCTGGAAAMTTTTGATTTTTTGAGATTTTTTTTTCGAAAATTTGCATCTTCAAAAGTGTCAAAACCTTACCAGAAATTTCTGAAGAAACATGTGAAACCTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30824</snp_id>
        <super_contig>c005600499.Contig1</super_contig>
        <contig_pos>172302</contig_pos>
        <strand></strand>
        <context>TTCGAAAATT[T/C]GMATCTTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCGGATTTTCTGGAAATTTTTGATTTTTTGAGATTTTTTTTTCGAAAATT</left_flank>
        <right_flank>GCATCTTCAAAAGTGTCAAAACCTTACCAGAAATTTCTGAAGAAACATGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATTGGGGAGTATCGAGCGACATCGTGATACAGTAGTCGACACGTTTCATCTTGGAAGTAGAGATTGTGAAAGTAGTAGAGGAATTCGTTATTGAAATGCGTTCGATTGATGTCGGGGTGGGGCTGAAAATTAACGAAAAATTCATAATTTTCGAAAATCGGAATTTCCATAAAATTTCGAAAACTCAAATTTTCGATTTTTTGAAATTTTGTACTTTTTGTAATTTTTTAAAATTTAAAAATTTTTAGATTTTTTTTTAGAAAAACCGAAAAATCCGAAATTTCAAAAAATACAAAAATCTGAAATTTTCGAAAATCGGAATTTCCAAAAAGGCGAAAAATTCGGAAATTTAAAAAACTGAAAAATCGAAAAAAACCAAAAAATAATCGAAAAATCGAAAAATTCCGAAAAATTCGGAATATTCAGTTTTATTGGAAATTCTGAATTTCGGATTTTCTGGAAATTTTTGATTTTTTGAGATTTTTTTTTCGAAAATTTGCATCTTCAAAAGTGTCAAAACCTTACCAGAAATTTCTGAAGAAACATGTGAAACCTCAACGGATTCCTGGAGATCAGTTCGTGAACGTCTATTCGATTGATTTGTCTGAAAACTTCTTTTTTACCTTTTTAACTTTTCAAAATTTCCAAATTACCGCCGATTATGTGTTATGGCACGATGATACATGAAATTACAGTACGCCACCAGAGTTTTCATTGTTCTTTGAAACACGAAAAGTGTGATTTTTTCGTTGCTCAAAAGGGCGGCACCAGCACAGAATGTGAGGGTTGATGTGATTTGGAGAAACGTCTCTCGTGGCCATTCGTCGATTCGGAAAATGTTTTCGTCTGGAAATCTGACAGGATTTGCAGAGAATTTCATGGATGTTGATTTGGCGGGAATTCAAAATTTCGAATCTTTGGATTTTTAAATTTAGAAATTTTTGTCTTTTTTGAATCTTTCAAAAATTCTCACCTGCATTAAAAGACTGTCCTGTCAA</canonical>
            <polymorphic>TGATTGGGGAGTATCGAGCGACATCGTGATACAGTAGTCGACACGTTTCATCTTGGAAGTAGAGATTGTGAAAGTAGTAGAGGAATTCGTTATTGAAATGCGTTCGATTGATGTCGGGGTGGGGCTGAAAATTAACGAAAAATTCATAATTTTCGAAAATCGGAATTTCCATAAAATTTCGAAAACTCAAATTTTCGATTTTTTGAAATTTTGTACTTTTTGTAATTTTTTAAAATTTAAAAATTTTTAGATTTTTTTTTAGAAAAACCGAAAAATCCGAAATTTCAAAAAATACAAAAATCTGAAATTTTCGAAAATCGGAATTTCCAAAAAGGCGAAAAATTCGGAAATTTAAAAAACTGAAAAATCGAAAAAAACCAAAAAATAATCGAAAAATCGAAAAATTCCGAAAAATTCGGAATATTCAGTTTTATTGGAAATTCTGAATTTCGGATTTTCTGGAAATTTTTGATTTTTTGAGATTTTTTTTTCGAAAATTYGCATCTTCAAAAGTGTCAAAACCTTACCAGAAATTTCTGAAGAAACATGTGAAACCTCAACGGATTCCTGGAGATCAGTTCGTGAACGTCTATTCGATTGATTTGTCTGAAAACTTCTTTTTTACCTTTTTAACTTTTCAAAATTTCCAAATTACCGCCGATTATGTGTTATGGCACGATGATACATGAAATTACAGTACGCCACCAGAGTTTTCATTGTTCTTTGAAACACGAAAAGTGTGATTTTTTCGTTGCTCAAAAGGGCGGCACCAGCACAGAATGTGAGGGTTGATGTGATTTGGAGAAACGTCTCTCGTGGCCATTCGTCGATTCGGAAAATGTTTTCGTCTGGAAATCTGACAGGATTTGCAGAGAATTTCATGGATGTTGATTTGGCGGGAATTCAAAATTTCGAATCTTTGGATTTTTAAATTTAGAAATTTTTGTCTTTTTTGAATCTTTCAAAAATTCTCACCTGCATTAAAAGACTGTCCTGTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>233 110 83 57 54 39 36 34 32 28 27 26 26 25 23 23 19 18 17 16 15 11 10 8 8 8 7 7</canonical_bands>
                <polymorphic_bands>233 110 83 68 57 54 39 34 28 27 26 26 25 23 23 19 18 17 16 15 11 10 8 8 8 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>501 368 109 22</canonical_bands>
                <polymorphic_bands>869 109 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCGGAATTTCCAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>GTTGAGGTTTCACATGTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATCGGAATTTCCAAAAAGGCGAAAAATTCGGAAATTTAAAAAACTGAAAAATCGAAAAAAACCAAAAAATAATCGAAAAATCGAAAAATTCCGAAAAATTCGGAATATTCAGTTTTATTGGAAATTCTGAATTTCGGATTTTCTGGAAATTTTTGATTTTTTGAGATTTTTTTTTCGAAAATTTGCATCTTCAAAAGTGTCAAAACCTTACCAGAAATTTCTGAAGAAACATGTGAAACCTCAAC</canonical_amplicon>
		<polymorphic_amplicon>AAATCGGAATTTCCAAAAAGGCGAAAAATTCGGAAATTTAAAAAACTGAAAAATCGAAAAAAACCAAAAAATAATCGAAAAATCGAAAAATTCCGAAAAATTCGGAATATTCAGTTTTATTGGAAATTCTGAATTTCGGATTTTCTGGAAATTTTTGATTTTTTGAGATTTTTTTTTCGAAAATTYGCATCTTCAAAAGTGTCAAAACCTTACCAGAAATTTCTGAAGAAACATGTGAAACCTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30825</snp_id>
        <super_contig>c005600499.Contig1</super_contig>
        <contig_pos>172304</contig_pos>
        <strand></strand>
        <context>CGAAAATTYG[C/A]ATCTTCAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GGATTTTCTGGAAATTTTTGATTTTTTGAGATTTTTTTTTCGAAAATTTG</left_flank>
        <right_flank>ATCTTCAAAAGTGTCAAAACCTTACCAGAAATTTCTGAAGAAACATGTGA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGGGGAGTATCGAGCGACATCGTGATACAGTAGTCGACACGTTTCATCTTGGAAGTAGAGATTGTGAAAGTAGTAGAGGAATTCGTTATTGAAATGCGTTCGATTGATGTCGGGGTGGGGCTGAAAATTAACGAAAAATTCATAATTTTCGAAAATCGGAATTTCCATAAAATTTCGAAAACTCAAATTTTCGATTTTTTGAAATTTTGTACTTTTTGTAATTTTTTAAAATTTAAAAATTTTTAGATTTTTTTTTAGAAAAACCGAAAAATCCGAAATTTCAAAAAATACAAAAATCTGAAATTTTCGAAAATCGGAATTTCCAAAAAGGCGAAAAATTCGGAAATTTAAAAAACTGAAAAATCGAAAAAAACCAAAAAATAATCGAAAAATCGAAAAATTCCGAAAAATTCGGAATATTCAGTTTTATTGGAAATTCTGAATTTCGGATTTTCTGGAAATTTTTGATTTTTTGAGATTTTTTTTTCGAAAATTTGCATCTTCAAAAGTGTCAAAACCTTACCAGAAATTTCTGAAGAAACATGTGAAACCTCAACGGATTCCTGGAGATCAGTTCGTGAACGTCTATTCGATTGATTTGTCTGAAAACTTCTTTTTTACCTTTTTAACTTTTCAAAATTTCCAAATTACCGCCGATTATGTGTTATGGCACGATGATACATGAAATTACAGTACGCCACCAGAGTTTTCATTGTTCTTTGAAACACGAAAAGTGTGATTTTTTCGTTGCTCAAAAGGGCGGCACCAGCACAGAATGTGAGGGTTGATGTGATTTGGAGAAACGTCTCTCGTGGCCATTCGTCGATTCGGAAAATGTTTTCGTCTGGAAATCTGACAGGATTTGCAGAGAATTTCATGGATGTTGATTTGGCGGGAATTCAAAATTTCGAATCTTTGGATTTTTAAATTTAGAAATTTTTGTCTTTTTTGAATCTTTCAAAAATTCTCACCTGCATTAAAAGACTGTCCTGTCAAGG</canonical>
            <polymorphic>ATTGGGGAGTATCGAGCGACATCGTGATACAGTAGTCGACACGTTTCATCTTGGAAGTAGAGATTGTGAAAGTAGTAGAGGAATTCGTTATTGAAATGCGTTCGATTGATGTCGGGGTGGGGCTGAAAATTAACGAAAAATTCATAATTTTCGAAAATCGGAATTTCCATAAAATTTCGAAAACTCAAATTTTCGATTTTTTGAAATTTTGTACTTTTTGTAATTTTTTAAAATTTAAAAATTTTTAGATTTTTTTTTAGAAAAACCGAAAAATCCGAAATTTCAAAAAATACAAAAATCTGAAATTTTCGAAAATCGGAATTTCCAAAAAGGCGAAAAATTCGGAAATTTAAAAAACTGAAAAATCGAAAAAAACCAAAAAATAATCGAAAAATCGAAAAATTCCGAAAAATTCGGAATATTCAGTTTTATTGGAAATTCTGAATTTCGGATTTTCTGGAAATTTTTGATTTTTTGAGATTTTTTTTTCGAAAATTTGMATCTTCAAAAGTGTCAAAACCTTACCAGAAATTTCTGAAGAAACATGTGAAACCTCAACGGATTCCTGGAGATCAGTTCGTGAACGTCTATTCGATTGATTTGTCTGAAAACTTCTTTTTTACCTTTTTAACTTTTCAAAATTTCCAAATTACCGCCGATTATGTGTTATGGCACGATGATACATGAAATTACAGTACGCCACCAGAGTTTTCATTGTTCTTTGAAACACGAAAAGTGTGATTTTTTCGTTGCTCAAAAGGGCGGCACCAGCACAGAATGTGAGGGTTGATGTGATTTGGAGAAACGTCTCTCGTGGCCATTCGTCGATTCGGAAAATGTTTTCGTCTGGAAATCTGACAGGATTTGCAGAGAATTTCATGGATGTTGATTTGGCGGGAATTCAAAATTTCGAATCTTTGGATTTTTAAATTTAGAAATTTTTGTCTTTTTTGAATCTTTCAAAAATTCTCACCTGCATTAAAAGACTGTCCTGTCAAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>499 368 109 24</canonical_bands>
                <polymorphic_bands>867 109 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCGGAATTTCCAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>GTTGAGGTTTCACATGTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATCGGAATTTCCAAAAAGGCGAAAAATTCGGAAATTTAAAAAACTGAAAAATCGAAAAAAACCAAAAAATAATCGAAAAATCGAAAAATTCCGAAAAATTCGGAATATTCAGTTTTATTGGAAATTCTGAATTTCGGATTTTCTGGAAATTTTTGATTTTTTGAGATTTTTTTTTCGAAAATTTGCATCTTCAAAAGTGTCAAAACCTTACCAGAAATTTCTGAAGAAACATGTGAAACCTCAAC</canonical_amplicon>
		<polymorphic_amplicon>AAATCGGAATTTCCAAAAAGGCGAAAAATTCGGAAATTTAAAAAACTGAAAAATCGAAAAAAACCAAAAAATAATCGAAAAATCGAAAAATTCCGAAAAATTCGGAATATTCAGTTTTATTGGAAATTCTGAATTTCGGATTTTCTGGAAATTTTTGATTTTTTGAGATTTTTTTTTCGAAAATTTGMATCTTCAAAAGTGTCAAAACCTTACCAGAAATTTCTGAAGAAACATGTGAAACCTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30826</snp_id>
        <super_contig>c005600501.Contig1</super_contig>
        <contig_pos>160853</contig_pos>
        <strand></strand>
        <context>cgggatttCA[G/A]GGACCCTTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTCGATTCCAACGATTCTGAAATTCTGGGTTCTGGAATTTCGGGATTTCA</left_flank>
        <right_flank>GGACCCTTGGATTGAAATTCCAGATTTTCAGCTTTCTGAATTTTTAGAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTGAGAATTTTCCAAAAAAAGGGTTTCTAAGTTCTTTGGAAAGCGCGCCCTATTTAGAATCGAATTAAAAGTTAGAAATTCCATTTTAAAGGCGCAGGTGTTAGACTCTAATTCATGATAAATGGGACACCACCACCCATCTGAATTTGAAAATAGAAATTTTTATTGCTTATTTTAAGTTTAAATGACGATTTATGGGAAAATCACCTACCGAATTTGTGTTCCAATTTGGAATTTTCGGAAATTAGTCGAACAATTTCGATTAGGGAAATTTTTAAAATTTCAGAACATTCTGACATTCTGAGTTTCTGAAAATTTTCAGAGTCTTGGAATTCTGAATTTTCTGAATTCTGAGATCCTCAGAGTTCGAAATTTTCAGATTCTAAAAATTCTGGTTTTCTGAATTTTCACAACTTCTGGACTTCGAGACCTTCAGATTCGAAATTTTTCGATTCCAACGATTCTGAAATTCTGGGTTCTGGAATTTCGGGATTTCAGGGACCCTTGGATTGAAATTCCAGATTTTCAGCTTTCTGAATTTTTAGAATCCCTAGAATCTGAAATTTTCAGATTCTGTGGTTCTGATTTTTTTTAGAATTTCAGAGTTTCAGTTTTCTCTAGATTTCGAAAATTTCAAAAAAAATTTAAATCCCAAAAATTCTCTTTTTTTTCAGAATCAAGCGTGCCCTGAACACCGACTCTCTGGTTGCCTCTCTCAATGGAGCTGAAAGATTACGGTAGGCGAAAATTCAAATGTTTGAAATTTTTATTCGAAATTTCAAAACTTTTGGTTGAAAATTTTCCAAAAACTTCCGTTTGAAATTTTTTTAATTCACAAATTTTTTAAATTTTTTACCTAAATTCCAAATTTTGAAAAAATTTATTTTTTTTTTAATTTTCAATTTTAAAATTTTAAAATTTCAGCTTCGGCCGCAAATAAACCACCATCTACCACCCCATCATTCGACTTCATTTCGTCCGTCTCTCAAATTAGCCAA</canonical>
            <polymorphic>TACTGAGAATTTTCCAAAAAAAGGGTTTCTAAGTTCTTTGGAAAGCGCGCCCTATTTAGAATCGAATTAAAAGTTAGAAATTCCATTTTAAAGGCGCAGGTGTTAGACTCTAATTCATGATAAATGGGACACCACCACCCATCTGAATTTGAAAATAGAAATTTTTATTGCTTATTTTAAGTTTAAATGACGATTTATGGGAAAATCACCTACCGAATTTGTGTTCCAATTTGGAATTTTCGGAAATTAGTCGAACAATTTCGATTAGGGAAATTTTTAAAATTTCAGAACATTCTGACATTCTGAGTTTCTGAAAATTTTCAGAGTCTTGGAATTCTGAATTTTCTGAATTCTGAGATCCTCAGAGTTCGAAATTTTCAGATTCTAAAAATTCTGGTTTTCTGAATTTTCACAACTTCTGGACTTCGAGACCTTCAGATTCGAAATTTTTCGATTCCAACGATTCTGAAATTCTGGGTTCTGGAATTTCGGGATTTCARGGACCCTTGGATTGAAATTCCAGATTTTCAGCTTTCTGAATTTTTAGAATCCCTAGAATCTGAAATTTTCAGATTCTGTGGTTCTGATTTTTTTTAGAATTTCAGAGTTTCAGTTTTCTCTAGATTTCGAAAATTTCAAAAAAAATTTAAATCCCAAAAATTCTCTTTTTTTTCAGAATCAAGCGTGCCCTGAACACCGACTCTCTGGTTGCCTCTCTCAATGGAGCTGAAAGATTACGGTAGGCGAAAATTCAAATGTTTGAAATTTTTATTCGAAATTTCAAAACTTTTGGTTGAAAATTTTCCAAAAACTTCCGTTTGAAATTTTTTTAATTCACAAATTTTTTAAATTTTTTACCTAAATTCCAAATTTTGAAAAAATTTATTTTTTTTTTAATTTTCAATTTTAAAATTTTAAAATTTCAGCTTCGGCCGCAAATAAACCACCATCTACCACCCCATCATTCGACTTCATTTCGTCCGTCTCTCAAATTAGCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>503 497</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGGWCCC</site>
                <isoschizomers>
                    <enzyme>SanDI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACCTACCGAATTTGTGTTC</pcr_primer_p1>
		<pcr_primer_p2>GATTCTAGGGATTCTAAAAATTCA</pcr_primer_p2>
		<pcr_amplicon_size>354</pcr_amplicon_size>
		<canonical_amplicon>CACCTACCGAATTTGTGTTCCAATTTGGAATTTTCGGAAATTAGTCGAACAATTTCGATTAGGGAAATTTTTAAAATTTCAGAACATTCTGACATTCTGAGTTTCTGAAAATTTTCAGAGTCTTGGAATTCTGAATTTTCTGAATTCTGAGATCCTCAGAGTTCGAAATTTTCAGATTCTAAAAATTCTGGTTTTCTGAATTTTCACAACTTCTGGACTTCGAGACCTTCAGATTCGAAATTTTTCGATTCCAACGATTCTGAAATTCTGGGTTCTGGAATTTCGGGATTTCAGGGACCCTTGGATTGAAATTCCAGATTTTCAGCTTTCTGAATTTTTAGAATCCCTAGAATC</canonical_amplicon>
		<polymorphic_amplicon>CACCTACCGAATTTGTGTTCCAATTTGGAATTTTCGGAAATTAGTCGAACAATTTCGATTAGGGAAATTTTTAAAATTTCAGAACATTCTGACATTCTGAGTTTCTGAAAATTTTCAGAGTCTTGGAATTCTGAATTTTCTGAATTCTGAGATCCTCAGAGTTCGAAATTTTCAGATTCTAAAAATTCTGGTTTTCTGAATTTTCACAACTTCTGGACTTCGAGACCTTCAGATTCGAAATTTTTCGATTCCAACGATTCTGAAATTCTGGGTTCTGGAATTTCGGGATTTCARGGACCCTTGGATTGAAATTCCAGATTTTCAGCTTTCTGAATTTTTAGAATCCCTAGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30827</snp_id>
        <super_contig>c005600501.Contig1</super_contig>
        <contig_pos>160942</contig_pos>
        <strand>+</strand>
        <context>TGGTTCTGAT[C/T]TTTTTTAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTTTAGAATCCCTAGAATCTGAAATTTTCAGATTCTGTGGTTCTGAT</left_flank>
        <right_flank>TTTTTTAGAATTTCAGAGTTTCAGTTTTCTCTAGATTTCGAAAATTTCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGGCGCAGGTGTTAGACTCTAATTCATGATAAATGGGACACCACCACCCATCTGAATTTGAAAATAGAAATTTTTATTGCTTATTTTAAGTTTAAATGACGATTTATGGGAAAATCACCTACCGAATTTGTGTTCCAATTTGGAATTTTCGGAAATTAGTCGAACAATTTCGATTAGGGAAATTTTTAAAATTTCAGAACATTCTGACATTCTGAGTTTCTGAAAATTTTCAGAGTCTTGGAATTCTGAATTTTCTGAATTCTGAGATCCTCAGAGTTCGAAATTTTCAGATTCTAAAAATTCTGGTTTTCTGAATTTTCACAACTTCTGGACTTCGAGACCTTCAGATTCGAAATTTTTCGATTCCAACGATTCTGAAATTCTGGGTTCTGGAATTTCGGGATTTCAGGGACCCTTGGATTGAAATTCCAGATTTTCAGCTTTCTGAATTTTTAGAATCCCTAGAATCTGAAATTTTCAGATTCTGTGGTTCTGATTTTTTTTAGAATTTCAGAGTTTCAGTTTTCTCTAGATTTCGAAAATTTCAAAAAAAATTTAAATCCCAAAAATTCTCTTTTTTTTCAGAATCAAGCGTGCCCTGAACACCGACTCTCTGGTTGCCTCTCTCAATGGAGCTGAAAGATTACGGTAGGCGAAAATTCAAATGTTTGAAATTTTTATTCGAAATTTCAAAACTTTTGGTTGAAAATTTTCCAAAAACTTCCGTTTGAAATTTTTTTAATTCACAAATTTTTTAAATTTTTTACCTAAATTCCAAATTTTGAAAAAATTTATTTTTTTTTTAATTTTCAATTTTAAAATTTTAAAATTTCAGCTTCGGCCGCAAATAAACCACCATCTACCACCCCATCATTCGACTTCATTTCGTCCGTCTCTCAAATTAGCCAATTCTCTCCGATTTTAATTAATTAATTACCCCTTGCAATTAACGCCCCTAATTTATTTCTCAAGCCTCAAAATCCATTGTGTTGTTGTAT</canonical>
            <polymorphic>AAAGGCGCAGGTGTTAGACTCTAATTCATGATAAATGGGACACCACCACCCATCTGAATTTGAAAATAGAAATTTTTATTGCTTATTTTAAGTTTAAATGACGATTTATGGGAAAATCACCTACCGAATTTGTGTTCCAATTTGGAATTTTCGGAAATTAGTCGAACAATTTCGATTAGGGAAATTTTTAAAATTTCAGAACATTCTGACATTCTGAGTTTCTGAAAATTTTCAGAGTCTTGGAATTCTGAATTTTCTGAATTCTGAGATCCTCAGAGTTCGAAATTTTCAGATTCTAAAAATTCTGGTTTTCTGAATTTTCACAACTTCTGGACTTCGAGACCTTCAGATTCGAAATTTTTCGATTCCAACGATTCTGAAATTCTGGGTTCTGGAATTTCGGGATTTCAGGGACCCTTGGATTGAAATTCCAGATTTTCAGCTTTCTGAATTTTTAGAATCCCTAGAATCTGAAATTTTCAGATTCTGTGGTTCTGATYTTTTTTAGAATTTCAGAGTTTCAGTTTTCTCTAGATTTCGAAAATTTCAAAAAAAATTTAAATCCCAAAAATTCTCTTTTTTTTCAGAATCAAGCGTGCCCTGAACACCGACTCTCTGGTTGCCTCTCTCAATGGAGCTGAAAGATTACGGTAGGCGAAAATTCAAATGTTTGAAATTTTTATTCGAAATTTCAAAACTTTTGGTTGAAAATTTTCCAAAAACTTCCGTTTGAAATTTTTTTAATTCACAAATTTTTTAAATTTTTTACCTAAATTCCAAATTTTGAAAAAATTTATTTTTTTTTTAATTTTCAATTTTAAAATTTTAAAATTTCAGCTTCGGCCGCAAATAAACCACCATCTACCACCCCATCATTCGACTTCATTTCGTCCGTCTCTCAAATTAGCCAATTCTCTCCGATTTTAATTAATTAATTACCCCTTGCAATTAACGCCCCTAATTTATTTCTCAAGCCTCAAAATCCATTGTGTTGTTGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATTTTCAGCTTTCTGAATTTT</pcr_primer_p1>
		<pcr_primer_p2>AACATTTGAATTTTCGCCTAC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AGATTTTCAGCTTTCTGAATTTTTAGAATCCCTAGAATCTGAAATTTTCAGATTCTGTGGTTCTGATTTTTTTTAGAATTTCAGAGTTTCAGTTTTCTCTAGATTTCGAAAATTTCAAAAAAAATTTAAATCCCAAAAATTCTCTTTTTTTTCAGAATCAAGCGTGCCCTGAACACCGACTCTCTGGTTGCCTCTCTCAATGGAGCTGAAAGATTACGGTAGGCGAAAATTCAAATGTT</canonical_amplicon>
		<polymorphic_amplicon>AGATTTTCAGCTTTCTGAATTTTTAGAATCCCTAGAATCTGAAATTTTCAGATTCTGTGGTTCTGATYTTTTTTAGAATTTCAGAGTTTCAGTTTTCTCTAGATTTCGAAAATTTCAAAAAAAATTTAAATCCCAAAAATTCTCTTTTTTTTCAGAATCAAGCGTGCCCTGAACACCGACTCTCTGGTTGCCTCTCTCAATGGAGCTGAAAGATTACGGTAGGCGAAAATTCAAATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30828</snp_id>
        <super_contig>c005600501.Contig1</super_contig>
        <contig_pos>212140</contig_pos>
        <strand></strand>
        <context>AGCTGGAAAT[T/A]GTTTTTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TAGGTTTTGCCAAACATGCCAGACAGTTTGGAGGATGGTTAGCTGGAAAT</left_flank>
        <right_flank>GTTTTTTTTTCAAAATTCAGAAATTCAGAAATTTACCTTCACTTCCATAT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAAATCTGAAATTTTTCTTTATAAATCGTGTTTTGACATTCAATGGTAAAACGTAAACTTAGAAATCCGAAAAAGGTATTTCACAGTTTTCCAATTTGTCTGAAAATTTCAGAGTGTACTGATCAAAATAAGAGCTTCATTTTTGTAAAGAACTACTTATTTGTACAAAGCACAACTCTCTTTTCAGTTCTAATATTTTTAATTTGTAATAATTTTTAACATATTTTTCAAAAATATGTCCTTTTTGTCTTTTTTGTTACAGTAAGCCAGATGAATCTAGTACAGTAATCCTCACCCGCCAACTTCTCGAGACGGATAATCACTGAGCCACGAGGCATCAAAATGAACATTTGCCTTGTCCAACAACACTCCCGTTCTTGAGATTGTATGATGTTTTGGAAAATTTGGATTATTTTTCTGATGAAAAGCCATCAAAGAACGGTGATCTAGGTTTTGCCAAACATGCCAGACAGTTTGGAGGATGGTTAGCTGGAAATTGTTTTTTTTTCAAAATTCAGAAATTCAGAAATTTACCTTCACTTCCATATCCAACTTCTCAAATTCCGTAAAATGCATCAACCATTTTGCTACAGTAATAAAATAAAACTGCCACATACTGGATATTTCCTTTTGCGATATAGTTGTCACCAACTGATATTTTTGATTTTTTCCTCTAACAGAATTCATTCCAACAGCTAATCTTTTCAATCGATTTTCAGTTAAATGAACCATTTCCATAGGTTGTCTGAAAATTTCCGTTGCTCCTTCGATAAGAAAATTGACGTCTACGTAGGTTTTATTCGTTGTAGATTTCTCGGAATCCCAAAACAAAATCATTTCTGGACGGCCAACGAAGGACTGGAAGGATTTGGGAATTTCTGATTTTCTAGAAATCATAATGGTATTTTTTGTGTTATGAAGACTGTCTCGATGGTATTGGAAATCTGAAAATTAATTTAAACTACAAAAATTCGGAATCTCTTATTTTCAGAAAACCG</canonical>
            <polymorphic>GAGAAATCTGAAATTTTTCTTTATAAATCGTGTTTTGACATTCAATGGTAAAACGTAAACTTAGAAATCCGAAAAAGGTATTTCACAGTTTTCCAATTTGTCTGAAAATTTCAGAGTGTACTGATCAAAATAAGAGCTTCATTTTTGTAAAGAACTACTTATTTGTACAAAGCACAACTCTCTTTTCAGTTCTAATATTTTTAATTTGTAATAATTTTTAACATATTTTTCAAAAATATGTCCTTTTTGTCTTTTTTGTTACAGTAAGCCAGATGAATCTAGTACAGTAATCCTCACCCGCCAACTTCTCGAGACGGATAATCACTGAGCCACGAGGCATCAAAATGAACATTTGCCTTGTCCAACAACACTCCCGTTCTTGAGATTGTATGATGTTTTGGAAAATTTGGATTATTTTTCTGATGAAAAGCCATCAAAGAACGGTGATCTAGGTTTTGCCAAACATGCCAGACAGTTTGGAGGATGGTTAGCTGGAAATWGTTTTTTTTTCAAAATTCAGAAATTCAGAAATTTACCTTCACTTCCATATCCAACTTCTCAAATTCCGTAAAATGCATCAACCATTTTGCTACAGTAATAAAATAAAACTGCCACATACTGGATATTTCCTTTTGCGATATAGTTGTCACCAACTGATATTTTTGATTTTTTCCTCTAACAGAATTCATTCCAACAGCTAATCTTTTCAATCGATTTTCAGTTAAATGAACCATTTCCATAGGTTGTCTGAAAATTTCCGTTGCTCCTTCGATAAGAAAATTGACGTCTACGTAGGTTTTATTCGTTGTAGATTTCTCGGAATCCCAAAACAAAATCATTTCTGGACGGCCAACGAAGGACTGGAAGGATTTGGGAATTTCTGATTTTCTAGAAATCATAATGGTATTTTTTGTGTTATGAAGACTGTCTCGATGGTATTGGAAATCTGAAAATTAATTTAAACTACAAAAATTCGGAATCTCTTATTTTCAGAAAACCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>191 121 97 96 93 83 76 70 32 30 26 17 15 12 11 10 8 8 4</canonical_bands>
                <polymorphic_bands>191 121 110 97 96 83 76 70 32 30 26 15 12 11 10 8 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTGAGATTGTATGATGTTTTG</pcr_primer_p1>
		<pcr_primer_p2>ATATCCAGTATGTGGCAGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTTGAGATTGTATGATGTTTTGGAAAATTTGGATTATTTTTCTGATGAAAAGCCATCAAAGAACGGTGATCTAGGTTTTGCCAAACATGCCAGACAGTTTGGAGGATGGTTAGCTGGAAATTGTTTTTTTTTCAAAATTCAGAAATTCAGAAATTTACCTTCACTTCCATATCCAACTTCTCAAATTCCGTAAAATGCATCAACCATTTTGCTACAGTAATAAAATAAAACTGCCACATACTGGATAT</canonical_amplicon>
		<polymorphic_amplicon>TCTTGAGATTGTATGATGTTTTGGAAAATTTGGATTATTTTTCTGATGAAAAGCCATCAAAGAACGGTGATCTAGGTTTTGCCAAACATGCCAGACAGTTTGGAGGATGGTTAGCTGGAAATWGTTTTTTTTTCAAAATTCAGAAATTCAGAAATTTACCTTCACTTCCATATCCAACTTCTCAAATTCCGTAAAATGCATCAACCATTTTGCTACAGTAATAAAATAAAACTGCCACATACTGGATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30829</snp_id>
        <super_contig>c005600501.Contig1</super_contig>
        <contig_pos>212172</contig_pos>
        <strand></strand>
        <context>AATTCAGAAA[T/A]TTACCTTCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GGATGGTTAGCTGGAAATTGTTTTTTTTTCAAAATTCAGAAATTCAGAAA</left_flank>
        <right_flank>TTACCTTCACTTCCATATCCAACTTCTCAAATTCCGTAAAATGCATCAAC</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGACATTCAATGGTAAAACGTAAACTTAGAAATCCGAAAAAGGTATTTCACAGTTTTCCAATTTGTCTGAAAATTTCAGAGTGTACTGATCAAAATAAGAGCTTCATTTTTGTAAAGAACTACTTATTTGTACAAAGCACAACTCTCTTTTCAGTTCTAATATTTTTAATTTGTAATAATTTTTAACATATTTTTCAAAAATATGTCCTTTTTGTCTTTTTTGTTACAGTAAGCCAGATGAATCTAGTACAGTAATCCTCACCCGCCAACTTCTCGAGACGGATAATCACTGAGCCACGAGGCATCAAAATGAACATTTGCCTTGTCCAACAACACTCCCGTTCTTGAGATTGTATGATGTTTTGGAAAATTTGGATTATTTTTCTGATGAAAAGCCATCAAAGAACGGTGATCTAGGTTTTGCCAAACATGCCAGACAGTTTGGAGGATGGTTAGCTGGAAATTGTTTTTTTTTCAAAATTCAGAAATTCAGAAATTTACCTTCACTTCCATATCCAACTTCTCAAATTCCGTAAAATGCATCAACCATTTTGCTACAGTAATAAAATAAAACTGCCACATACTGGATATTTCCTTTTGCGATATAGTTGTCACCAACTGATATTTTTGATTTTTTCCTCTAACAGAATTCATTCCAACAGCTAATCTTTTCAATCGATTTTCAGTTAAATGAACCATTTCCATAGGTTGTCTGAAAATTTCCGTTGCTCCTTCGATAAGAAAATTGACGTCTACGTAGGTTTTATTCGTTGTAGATTTCTCGGAATCCCAAAACAAAATCATTTCTGGACGGCCAACGAAGGACTGGAAGGATTTGGGAATTTCTGATTTTCTAGAAATCATAATGGTATTTTTTGTGTTATGAAGACTGTCTCGATGGTATTGGAAATCTGAAAATTAATTTAAACTACAAAAATTCGGAATCTCTTATTTTCAGAAAACCGTGATCTATGGATTTCAGAATCTCAAAATCCTA</canonical>
            <polymorphic>TTTTGACATTCAATGGTAAAACGTAAACTTAGAAATCCGAAAAAGGTATTTCACAGTTTTCCAATTTGTCTGAAAATTTCAGAGTGTACTGATCAAAATAAGAGCTTCATTTTTGTAAAGAACTACTTATTTGTACAAAGCACAACTCTCTTTTCAGTTCTAATATTTTTAATTTGTAATAATTTTTAACATATTTTTCAAAAATATGTCCTTTTTGTCTTTTTTGTTACAGTAAGCCAGATGAATCTAGTACAGTAATCCTCACCCGCCAACTTCTCGAGACGGATAATCACTGAGCCACGAGGCATCAAAATGAACATTTGCCTTGTCCAACAACACTCCCGTTCTTGAGATTGTATGATGTTTTGGAAAATTTGGATTATTTTTCTGATGAAAAGCCATCAAAGAACGGTGATCTAGGTTTTGCCAAACATGCCAGACAGTTTGGAGGATGGTTAGCTGGAAATTGTTTTTTTTTCAAAATTCAGAAATTCAGAAAWTTACCTTCACTTCCATATCCAACTTCTCAAATTCCGTAAAATGCATCAACCATTTTGCTACAGTAATAAAATAAAACTGCCACATACTGGATATTTCCTTTTGCGATATAGTTGTCACCAACTGATATTTTTGATTTTTTCCTCTAACAGAATTCATTCCAACAGCTAATCTTTTCAATCGATTTTCAGTTAAATGAACCATTTCCATAGGTTGTCTGAAAATTTCCGTTGCTCCTTCGATAAGAAAATTGACGTCTACGTAGGTTTTATTCGTTGTAGATTTCTCGGAATCCCAAAACAAAATCATTTCTGGACGGCCAACGAAGGACTGGAAGGATTTGGGAATTTCTGATTTTCTAGAAATCATAATGGTATTTTTTGTGTTATGAAGACTGTCTCGATGGTATTGGAAATCTGAAAATTAATTTAAACTACAAAAATTCGGAATCTCTTATTTTCAGAAAACCGTGATCTATGGATTTCAGAATCTCAAAATCCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>297 123 121 110 95 74 70 62 32 8 8</canonical_bands>
                <polymorphic_bands>297 123 121 110 95 74 70 62 40 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>191 121 97 96 93 76 70 62 62 32 26 17 15 12 10 8 8 4</canonical_bands>
                <polymorphic_bands>191 121 97 96 93 76 70 62 62 40 26 17 15 12 10 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTGAGATTGTATGATGTTTTG</pcr_primer_p1>
		<pcr_primer_p2>ATATCCAGTATGTGGCAGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTTGAGATTGTATGATGTTTTGGAAAATTTGGATTATTTTTCTGATGAAAAGCCATCAAAGAACGGTGATCTAGGTTTTGCCAAACATGCCAGACAGTTTGGAGGATGGTTAGCTGGAAATTGTTTTTTTTTCAAAATTCAGAAATTCAGAAATTTACCTTCACTTCCATATCCAACTTCTCAAATTCCGTAAAATGCATCAACCATTTTGCTACAGTAATAAAATAAAACTGCCACATACTGGATAT</canonical_amplicon>
		<polymorphic_amplicon>TCTTGAGATTGTATGATGTTTTGGAAAATTTGGATTATTTTTCTGATGAAAAGCCATCAAAGAACGGTGATCTAGGTTTTGCCAAACATGCCAGACAGTTTGGAGGATGGTTAGCTGGAAATTGTTTTTTTTTCAAAATTCAGAAATTCAGAAAWTTACCTTCACTTCCATATCCAACTTCTCAAATTCCGTAAAATGCATCAACCATTTTGCTACAGTAATAAAATAAAACTGCCACATACTGGATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30830</snp_id>
        <super_contig>c005600501.Contig1</super_contig>
        <contig_pos>212350</contig_pos>
        <strand></strand>
        <context>AATCTTTTCA[A/G]TCGATTTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTGATTTTTTCCTCTAACAGAATTCATTCCAACAGCTAATCTTTTCA</left_flank>
        <right_flank>TCGATTTTCAGTTAAATGAACCATTTCCATAGGTTGTCTGAAAATTTCCG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAATTTTTAACATATTTTTCAAAAATATGTCCTTTTTGTCTTTTTTGTTACAGTAAGCCAGATGAATCTAGTACAGTAATCCTCACCCGCCAACTTCTCGAGACGGATAATCACTGAGCCACGAGGCATCAAAATGAACATTTGCCTTGTCCAACAACACTCCCGTTCTTGAGATTGTATGATGTTTTGGAAAATTTGGATTATTTTTCTGATGAAAAGCCATCAAAGAACGGTGATCTAGGTTTTGCCAAACATGCCAGACAGTTTGGAGGATGGTTAGCTGGAAATTGTTTTTTTTTCAAAATTCAGAAATTCAGAAATTTACCTTCACTTCCATATCCAACTTCTCAAATTCCGTAAAATGCATCAACCATTTTGCTACAGTAATAAAATAAAACTGCCACATACTGGATATTTCCTTTTGCGATATAGTTGTCACCAACTGATATTTTTGATTTTTTCCTCTAACAGAATTCATTCCAACAGCTAATCTTTTCAATCGATTTTCAGTTAAATGAACCATTTCCATAGGTTGTCTGAAAATTTCCGTTGCTCCTTCGATAAGAAAATTGACGTCTACGTAGGTTTTATTCGTTGTAGATTTCTCGGAATCCCAAAACAAAATCATTTCTGGACGGCCAACGAAGGACTGGAAGGATTTGGGAATTTCTGATTTTCTAGAAATCATAATGGTATTTTTTGTGTTATGAAGACTGTCTCGATGGTATTGGAAATCTGAAAATTAATTTAAACTACAAAAATTCGGAATCTCTTATTTTCAGAAAACCGTGATCTATGGATTTCAGAATCTCAAAATCCTATAACAGTAGATTCTTAAAATATCAGAAACTTAAAATCTTAGAGCCTTGGAATCCCATAATTTAAGAATCTCAGGATTTCAGAATCCTAGAATTTCAGAATCCCAAAATTTAAGAATCTCAGTATCTCAGAATTTCAGAATCTCAGAATTCTTCGAAACTTGTTTGTGCAATAATTTTT</canonical>
            <polymorphic>ATAATTTTTAACATATTTTTCAAAAATATGTCCTTTTTGTCTTTTTTGTTACAGTAAGCCAGATGAATCTAGTACAGTAATCCTCACCCGCCAACTTCTCGAGACGGATAATCACTGAGCCACGAGGCATCAAAATGAACATTTGCCTTGTCCAACAACACTCCCGTTCTTGAGATTGTATGATGTTTTGGAAAATTTGGATTATTTTTCTGATGAAAAGCCATCAAAGAACGGTGATCTAGGTTTTGCCAAACATGCCAGACAGTTTGGAGGATGGTTAGCTGGAAATTGTTTTTTTTTCAAAATTCAGAAATTCAGAAATTTACCTTCACTTCCATATCCAACTTCTCAAATTCCGTAAAATGCATCAACCATTTTGCTACAGTAATAAAATAAAACTGCCACATACTGGATATTTCCTTTTGCGATATAGTTGTCACCAACTGATATTTTTGATTTTTTCCTCTAACAGAATTCATTCCAACAGCTAATCTTTTCARTCGATTTTCAGTTAAATGAACCATTTCCATAGGTTGTCTGAAAATTTCCGTTGCTCCTTCGATAAGAAAATTGACGTCTACGTAGGTTTTATTCGTTGTAGATTTCTCGGAATCCCAAAACAAAATCATTTCTGGACGGCCAACGAAGGACTGGAAGGATTTGGGAATTTCTGATTTTCTAGAAATCATAATGGTATTTTTTGTGTTATGAAGACTGTCTCGATGGTATTGGAAATCTGAAAATTAATTTAAACTACAAAAATTCGGAATCTCTTATTTTCAGAAAACCGTGATCTATGGATTTCAGAATCTCAAAATCCTATAACAGTAGATTCTTAAAATATCAGAAACTTAAAATCTTAGAGCCTTGGAATCCCATAATTTAAGAATCTCAGGATTTCAGAATCCTAGAATTTCAGAATCCCAAAATTTAAGAATCTCAGTATCTCAGAATTTCAGAATCTCAGAATTCTTCGAAACTTGTTTGTGCAATAATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGTCACCAACTGATATTTTTG</pcr_primer_p1>
		<pcr_primer_p2>TAGAAAATCAGAAATTCCCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTGTCACCAACTGATATTTTTGATTTTTTCCTCTAACAGAATTCATTCCAACAGCTAATCTTTTCAATCGATTTTCAGTTAAATGAACCATTTCCATAGGTTGTCTGAAAATTTCCGTTGCTCCTTCGATAAGAAAATTGACGTCTACGTAGGTTTTATTCGTTGTAGATTTCTCGGAATCCCAAAACAAAATCATTTCTGGACGGCCAACGAAGGACTGGAAGGATTTGGGAATTTCTGATTTTCTA</canonical_amplicon>
		<polymorphic_amplicon>GTTGTCACCAACTGATATTTTTGATTTTTTCCTCTAACAGAATTCATTCCAACAGCTAATCTTTTCARTCGATTTTCAGTTAAATGAACCATTTCCATAGGTTGTCTGAAAATTTCCGTTGCTCCTTCGATAAGAAAATTGACGTCTACGTAGGTTTTATTCGTTGTAGATTTCTCGGAATCCCAAAACAAAATCATTTCTGGACGGCCAACGAAGGACTGGAAGGATTTGGGAATTTCTGATTTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30831</snp_id>
        <super_contig>c005600501.Contig1</super_contig>
        <contig_pos>212371</contig_pos>
        <strand></strand>
        <context>GTTAAATGAA[C/T]CATTTCCATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAATTCATTCCAACAGCTAATCTTTTCAATCGATTTTCAGTTAAATGAA</left_flank>
        <right_flank>CATTTCCATAGGTTGTCTGAAAATTTCCGTTGCTCCTTCGATAAGAAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATATGTCCTTTTTGTCTTTTTTGTTACAGTAAGCCAGATGAATCTAGTACAGTAATCCTCACCCGCCAACTTCTCGAGACGGATAATCACTGAGCCACGAGGCATCAAAATGAACATTTGCCTTGTCCAACAACACTCCCGTTCTTGAGATTGTATGATGTTTTGGAAAATTTGGATTATTTTTCTGATGAAAAGCCATCAAAGAACGGTGATCTAGGTTTTGCCAAACATGCCAGACAGTTTGGAGGATGGTTAGCTGGAAATTGTTTTTTTTTCAAAATTCAGAAATTCAGAAATTTACCTTCACTTCCATATCCAACTTCTCAAATTCCGTAAAATGCATCAACCATTTTGCTACAGTAATAAAATAAAACTGCCACATACTGGATATTTCCTTTTGCGATATAGTTGTCACCAACTGATATTTTTGATTTTTTCCTCTAACAGAATTCATTCCAACAGCTAATCTTTTCAATCGATTTTCAGTTAAATGAACCATTTCCATAGGTTGTCTGAAAATTTCCGTTGCTCCTTCGATAAGAAAATTGACGTCTACGTAGGTTTTATTCGTTGTAGATTTCTCGGAATCCCAAAACAAAATCATTTCTGGACGGCCAACGAAGGACTGGAAGGATTTGGGAATTTCTGATTTTCTAGAAATCATAATGGTATTTTTTGTGTTATGAAGACTGTCTCGATGGTATTGGAAATCTGAAAATTAATTTAAACTACAAAAATTCGGAATCTCTTATTTTCAGAAAACCGTGATCTATGGATTTCAGAATCTCAAAATCCTATAACAGTAGATTCTTAAAATATCAGAAACTTAAAATCTTAGAGCCTTGGAATCCCATAATTTAAGAATCTCAGGATTTCAGAATCCTAGAATTTCAGAATCCCAAAATTTAAGAATCTCAGTATCTCAGAATTTCAGAATCTCAGAATTCTTCGAAACTTGTTTGTGCAATAATTTTTTTTAATCTCACTACTAGTTTC</canonical>
            <polymorphic>AAAAATATGTCCTTTTTGTCTTTTTTGTTACAGTAAGCCAGATGAATCTAGTACAGTAATCCTCACCCGCCAACTTCTCGAGACGGATAATCACTGAGCCACGAGGCATCAAAATGAACATTTGCCTTGTCCAACAACACTCCCGTTCTTGAGATTGTATGATGTTTTGGAAAATTTGGATTATTTTTCTGATGAAAAGCCATCAAAGAACGGTGATCTAGGTTTTGCCAAACATGCCAGACAGTTTGGAGGATGGTTAGCTGGAAATTGTTTTTTTTTCAAAATTCAGAAATTCAGAAATTTACCTTCACTTCCATATCCAACTTCTCAAATTCCGTAAAATGCATCAACCATTTTGCTACAGTAATAAAATAAAACTGCCACATACTGGATATTTCCTTTTGCGATATAGTTGTCACCAACTGATATTTTTGATTTTTTCCTCTAACAGAATTCATTCCAACAGCTAATCTTTTCAATCGATTTTCAGTTAAATGAAYCATTTCCATAGGTTGTCTGAAAATTTCCGTTGCTCCTTCGATAAGAAAATTGACGTCTACGTAGGTTTTATTCGTTGTAGATTTCTCGGAATCCCAAAACAAAATCATTTCTGGACGGCCAACGAAGGACTGGAAGGATTTGGGAATTTCTGATTTTCTAGAAATCATAATGGTATTTTTTGTGTTATGAAGACTGTCTCGATGGTATTGGAAATCTGAAAATTAATTTAAACTACAAAAATTCGGAATCTCTTATTTTCAGAAAACCGTGATCTATGGATTTCAGAATCTCAAAATCCTATAACAGTAGATTCTTAAAATATCAGAAACTTAAAATCTTAGAGCCTTGGAATCCCATAATTTAAGAATCTCAGGATTTCAGAATCCTAGAATTTCAGAATCCCAAAATTTAAGAATCTCAGTATCTCAGAATTTCAGAATCTCAGAATTCTTCGAAACTTGTTTGTGCAATAATTTTTTTTAATCTCACTACTAGTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGTCACCAACTGATATTTTTG</pcr_primer_p1>
		<pcr_primer_p2>TAGAAAATCAGAAATTCCCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTGTCACCAACTGATATTTTTGATTTTTTCCTCTAACAGAATTCATTCCAACAGCTAATCTTTTCAATCGATTTTCAGTTAAATGAACCATTTCCATAGGTTGTCTGAAAATTTCCGTTGCTCCTTCGATAAGAAAATTGACGTCTACGTAGGTTTTATTCGTTGTAGATTTCTCGGAATCCCAAAACAAAATCATTTCTGGACGGCCAACGAAGGACTGGAAGGATTTGGGAATTTCTGATTTTCTA</canonical_amplicon>
		<polymorphic_amplicon>GTTGTCACCAACTGATATTTTTGATTTTTTCCTCTAACAGAATTCATTCCAACAGCTAATCTTTTCAATCGATTTTCAGTTAAATGAAYCATTTCCATAGGTTGTCTGAAAATTTCCGTTGCTCCTTCGATAAGAAAATTGACGTCTACGTAGGTTTTATTCGTTGTAGATTTCTCGGAATCCCAAAACAAAATCATTTCTGGACGGCCAACGAAGGACTGGAAGGATTTGGGAATTTCTGATTTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30832</snp_id>
        <super_contig>c005600501.Contig1</super_contig>
        <contig_pos>212402</contig_pos>
        <strand></strand>
        <context>AAATTTCCGT[T/C]GCTYCTTCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CGATTTTCAGTTAAATGAACCATTTCCATAGGTTGTCTGAAAATTTCCGT</left_flank>
        <right_flank>GCTCCTTCGATAAGAAAATTGACGTCTACGTAGGTTTTATTCGTTGTAGA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTAAGCCAGATGAATCTAGTACAGTAATCCTCACCCGCCAACTTCTCGAGACGGATAATCACTGAGCCACGAGGCATCAAAATGAACATTTGCCTTGTCCAACAACACTCCCGTTCTTGAGATTGTATGATGTTTTGGAAAATTTGGATTATTTTTCTGATGAAAAGCCATCAAAGAACGGTGATCTAGGTTTTGCCAAACATGCCAGACAGTTTGGAGGATGGTTAGCTGGAAATTGTTTTTTTTTCAAAATTCAGAAATTCAGAAATTTACCTTCACTTCCATATCCAACTTCTCAAATTCCGTAAAATGCATCAACCATTTTGCTACAGTAATAAAATAAAACTGCCACATACTGGATATTTCCTTTTGCGATATAGTTGTCACCAACTGATATTTTTGATTTTTTCCTCTAACAGAATTCATTCCAACAGCTAATCTTTTCAATCGATTTTCAGTTAAATGAACCATTTCCATAGGTTGTCTGAAAATTTCCGTTGCTCCTTCGATAAGAAAATTGACGTCTACGTAGGTTTTATTCGTTGTAGATTTCTCGGAATCCCAAAACAAAATCATTTCTGGACGGCCAACGAAGGACTGGAAGGATTTGGGAATTTCTGATTTTCTAGAAATCATAATGGTATTTTTTGTGTTATGAAGACTGTCTCGATGGTATTGGAAATCTGAAAATTAATTTAAACTACAAAAATTCGGAATCTCTTATTTTCAGAAAACCGTGATCTATGGATTTCAGAATCTCAAAATCCTATAACAGTAGATTCTTAAAATATCAGAAACTTAAAATCTTAGAGCCTTGGAATCCCATAATTTAAGAATCTCAGGATTTCAGAATCCTAGAATTTCAGAATCCCAAAATTTAAGAATCTCAGTATCTCAGAATTTCAGAATCTCAGAATTCTTCGAAACTTGTTTGTGCAATAATTTTTTTTAATCTCACTACTAGTTTCCATTCCAACCGCGTAGCACTTTTGTAGACGA</canonical>
            <polymorphic>AGTAAGCCAGATGAATCTAGTACAGTAATCCTCACCCGCCAACTTCTCGAGACGGATAATCACTGAGCCACGAGGCATCAAAATGAACATTTGCCTTGTCCAACAACACTCCCGTTCTTGAGATTGTATGATGTTTTGGAAAATTTGGATTATTTTTCTGATGAAAAGCCATCAAAGAACGGTGATCTAGGTTTTGCCAAACATGCCAGACAGTTTGGAGGATGGTTAGCTGGAAATTGTTTTTTTTTCAAAATTCAGAAATTCAGAAATTTACCTTCACTTCCATATCCAACTTCTCAAATTCCGTAAAATGCATCAACCATTTTGCTACAGTAATAAAATAAAACTGCCACATACTGGATATTTCCTTTTGCGATATAGTTGTCACCAACTGATATTTTTGATTTTTTCCTCTAACAGAATTCATTCCAACAGCTAATCTTTTCAATCGATTTTCAGTTAAATGAACCATTTCCATAGGTTGTCTGAAAATTTCCGTYGCTCCTTCGATAAGAAAATTGACGTCTACGTAGGTTTTATTCGTTGTAGATTTCTCGGAATCCCAAAACAAAATCATTTCTGGACGGCCAACGAAGGACTGGAAGGATTTGGGAATTTCTGATTTTCTAGAAATCATAATGGTATTTTTTGTGTTATGAAGACTGTCTCGATGGTATTGGAAATCTGAAAATTAATTTAAACTACAAAAATTCGGAATCTCTTATTTTCAGAAAACCGTGATCTATGGATTTCAGAATCTCAAAATCCTATAACAGTAGATTCTTAAAATATCAGAAACTTAAAATCTTAGAGCCTTGGAATCCCATAATTTAAGAATCTCAGGATTTCAGAATCCTAGAATTTCAGAATCCCAAAATTTAAGAATCTCAGTATCTCAGAATTTCAGAATCTCAGAATTCTTCGAAACTTGTTTGTGCAATAATTTTTTTTAATCTCACTACTAGTTTCCATTCCAACCGCGTAGCACTTTTGTAGACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGTCACCAACTGATATTTTTG</pcr_primer_p1>
		<pcr_primer_p2>TAGAAAATCAGAAATTCCCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTGTCACCAACTGATATTTTTGATTTTTTCCTCTAACAGAATTCATTCCAACAGCTAATCTTTTCAATCGATTTTCAGTTAAATGAACCATTTCCATAGGTTGTCTGAAAATTTCCGTTGCTCCTTCGATAAGAAAATTGACGTCTACGTAGGTTTTATTCGTTGTAGATTTCTCGGAATCCCAAAACAAAATCATTTCTGGACGGCCAACGAAGGACTGGAAGGATTTGGGAATTTCTGATTTTCTA</canonical_amplicon>
		<polymorphic_amplicon>GTTGTCACCAACTGATATTTTTGATTTTTTCCTCTAACAGAATTCATTCCAACAGCTAATCTTTTCAATCGATTTTCAGTTAAATGAACCATTTCCATAGGTTGTCTGAAAATTTCCGTYGCTCCTTCGATAAGAAAATTGACGTCTACGTAGGTTTTATTCGTTGTAGATTTCTCGGAATCCCAAAACAAAATCATTTCTGGACGGCCAACGAAGGACTGGAAGGATTTGGGAATTTCTGATTTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30833</snp_id>
        <super_contig>c005600501.Contig1</super_contig>
        <contig_pos>212406</contig_pos>
        <strand></strand>
        <context>TTCCGTYGCT[C/T]CTTCGATRAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCAGTTAAATGAACCATTTCCATAGGTTGTCTGAAAATTTCCGTTGCT</left_flank>
        <right_flank>CTTCGATAAGAAAATTGACGTCTACGTAGGTTTTATTCGTTGTAGATTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCAGATGAATCTAGTACAGTAATCCTCACCCGCCAACTTCTCGAGACGGATAATCACTGAGCCACGAGGCATCAAAATGAACATTTGCCTTGTCCAACAACACTCCCGTTCTTGAGATTGTATGATGTTTTGGAAAATTTGGATTATTTTTCTGATGAAAAGCCATCAAAGAACGGTGATCTAGGTTTTGCCAAACATGCCAGACAGTTTGGAGGATGGTTAGCTGGAAATTGTTTTTTTTTCAAAATTCAGAAATTCAGAAATTTACCTTCACTTCCATATCCAACTTCTCAAATTCCGTAAAATGCATCAACCATTTTGCTACAGTAATAAAATAAAACTGCCACATACTGGATATTTCCTTTTGCGATATAGTTGTCACCAACTGATATTTTTGATTTTTTCCTCTAACAGAATTCATTCCAACAGCTAATCTTTTCAATCGATTTTCAGTTAAATGAACCATTTCCATAGGTTGTCTGAAAATTTCCGTTGCTCCTTCGATAAGAAAATTGACGTCTACGTAGGTTTTATTCGTTGTAGATTTCTCGGAATCCCAAAACAAAATCATTTCTGGACGGCCAACGAAGGACTGGAAGGATTTGGGAATTTCTGATTTTCTAGAAATCATAATGGTATTTTTTGTGTTATGAAGACTGTCTCGATGGTATTGGAAATCTGAAAATTAATTTAAACTACAAAAATTCGGAATCTCTTATTTTCAGAAAACCGTGATCTATGGATTTCAGAATCTCAAAATCCTATAACAGTAGATTCTTAAAATATCAGAAACTTAAAATCTTAGAGCCTTGGAATCCCATAATTTAAGAATCTCAGGATTTCAGAATCCTAGAATTTCAGAATCCCAAAATTTAAGAATCTCAGTATCTCAGAATTTCAGAATCTCAGAATTCTTCGAAACTTGTTTGTGCAATAATTTTTTTTAATCTCACTACTAGTTTCCATTCCAACCGCGTAGCACTTTTGTAGACGACATG</canonical>
            <polymorphic>AGCCAGATGAATCTAGTACAGTAATCCTCACCCGCCAACTTCTCGAGACGGATAATCACTGAGCCACGAGGCATCAAAATGAACATTTGCCTTGTCCAACAACACTCCCGTTCTTGAGATTGTATGATGTTTTGGAAAATTTGGATTATTTTTCTGATGAAAAGCCATCAAAGAACGGTGATCTAGGTTTTGCCAAACATGCCAGACAGTTTGGAGGATGGTTAGCTGGAAATTGTTTTTTTTTCAAAATTCAGAAATTCAGAAATTTACCTTCACTTCCATATCCAACTTCTCAAATTCCGTAAAATGCATCAACCATTTTGCTACAGTAATAAAATAAAACTGCCACATACTGGATATTTCCTTTTGCGATATAGTTGTCACCAACTGATATTTTTGATTTTTTCCTCTAACAGAATTCATTCCAACAGCTAATCTTTTCAATCGATTTTCAGTTAAATGAACCATTTCCATAGGTTGTCTGAAAATTTCCGTTGCTYCTTCGATAAGAAAATTGACGTCTACGTAGGTTTTATTCGTTGTAGATTTCTCGGAATCCCAAAACAAAATCATTTCTGGACGGCCAACGAAGGACTGGAAGGATTTGGGAATTTCTGATTTTCTAGAAATCATAATGGTATTTTTTGTGTTATGAAGACTGTCTCGATGGTATTGGAAATCTGAAAATTAATTTAAACTACAAAAATTCGGAATCTCTTATTTTCAGAAAACCGTGATCTATGGATTTCAGAATCTCAAAATCCTATAACAGTAGATTCTTAAAATATCAGAAACTTAAAATCTTAGAGCCTTGGAATCCCATAATTTAAGAATCTCAGGATTTCAGAATCCTAGAATTTCAGAATCCCAAAATTTAAGAATCTCAGTATCTCAGAATTTCAGAATCTCAGAATTCTTCGAAACTTGTTTGTGCAATAATTTTTTTTAATCTCACTACTAGTTTCCATTCCAACCGCGTAGCACTTTTGTAGACGACATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGTCACCAACTGATATTTTTG</pcr_primer_p1>
		<pcr_primer_p2>TAGAAAATCAGAAATTCCCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTGTCACCAACTGATATTTTTGATTTTTTCCTCTAACAGAATTCATTCCAACAGCTAATCTTTTCAATCGATTTTCAGTTAAATGAACCATTTCCATAGGTTGTCTGAAAATTTCCGTTGCTCCTTCGATAAGAAAATTGACGTCTACGTAGGTTTTATTCGTTGTAGATTTCTCGGAATCCCAAAACAAAATCATTTCTGGACGGCCAACGAAGGACTGGAAGGATTTGGGAATTTCTGATTTTCTA</canonical_amplicon>
		<polymorphic_amplicon>GTTGTCACCAACTGATATTTTTGATTTTTTCCTCTAACAGAATTCATTCCAACAGCTAATCTTTTCAATCGATTTTCAGTTAAATGAACCATTTCCATAGGTTGTCTGAAAATTTCCGTTGCTYCTTCGATAAGAAAATTGACGTCTACGTAGGTTTTATTCGTTGTAGATTTCTCGGAATCCCAAAACAAAATCATTTCTGGACGGCCAACGAAGGACTGGAAGGATTTGGGAATTTCTGATTTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30834</snp_id>
        <super_contig>c005600501.Contig1</super_contig>
        <contig_pos>212414</contig_pos>
        <strand></strand>
        <context>CTYCTTCGAT[A/G]AGAAAATTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATGAACCATTTCCATAGGTTGTCTGAAAATTTCCGTTGCTCCTTCGAT</left_flank>
        <right_flank>AGAAAATTGACGTCTACGTAGGTTTTATTCGTTGTAGATTTCTCGGAATC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATCTAGTACAGTAATCCTCACCCGCCAACTTCTCGAGACGGATAATCACTGAGCCACGAGGCATCAAAATGAACATTTGCCTTGTCCAACAACACTCCCGTTCTTGAGATTGTATGATGTTTTGGAAAATTTGGATTATTTTTCTGATGAAAAGCCATCAAAGAACGGTGATCTAGGTTTTGCCAAACATGCCAGACAGTTTGGAGGATGGTTAGCTGGAAATTGTTTTTTTTTCAAAATTCAGAAATTCAGAAATTTACCTTCACTTCCATATCCAACTTCTCAAATTCCGTAAAATGCATCAACCATTTTGCTACAGTAATAAAATAAAACTGCCACATACTGGATATTTCCTTTTGCGATATAGTTGTCACCAACTGATATTTTTGATTTTTTCCTCTAACAGAATTCATTCCAACAGCTAATCTTTTCAATCGATTTTCAGTTAAATGAACCATTTCCATAGGTTGTCTGAAAATTTCCGTTGCTCCTTCGATAAGAAAATTGACGTCTACGTAGGTTTTATTCGTTGTAGATTTCTCGGAATCCCAAAACAAAATCATTTCTGGACGGCCAACGAAGGACTGGAAGGATTTGGGAATTTCTGATTTTCTAGAAATCATAATGGTATTTTTTGTGTTATGAAGACTGTCTCGATGGTATTGGAAATCTGAAAATTAATTTAAACTACAAAAATTCGGAATCTCTTATTTTCAGAAAACCGTGATCTATGGATTTCAGAATCTCAAAATCCTATAACAGTAGATTCTTAAAATATCAGAAACTTAAAATCTTAGAGCCTTGGAATCCCATAATTTAAGAATCTCAGGATTTCAGAATCCTAGAATTTCAGAATCCCAAAATTTAAGAATCTCAGTATCTCAGAATTTCAGAATCTCAGAATTCTTCGAAACTTGTTTGTGCAATAATTTTTTTTAATCTCACTACTAGTTTCCATTCCAACCGCGTAGCACTTTTGTAGACGACATGGTTTGCAA</canonical>
            <polymorphic>GAATCTAGTACAGTAATCCTCACCCGCCAACTTCTCGAGACGGATAATCACTGAGCCACGAGGCATCAAAATGAACATTTGCCTTGTCCAACAACACTCCCGTTCTTGAGATTGTATGATGTTTTGGAAAATTTGGATTATTTTTCTGATGAAAAGCCATCAAAGAACGGTGATCTAGGTTTTGCCAAACATGCCAGACAGTTTGGAGGATGGTTAGCTGGAAATTGTTTTTTTTTCAAAATTCAGAAATTCAGAAATTTACCTTCACTTCCATATCCAACTTCTCAAATTCCGTAAAATGCATCAACCATTTTGCTACAGTAATAAAATAAAACTGCCACATACTGGATATTTCCTTTTGCGATATAGTTGTCACCAACTGATATTTTTGATTTTTTCCTCTAACAGAATTCATTCCAACAGCTAATCTTTTCAATCGATTTTCAGTTAAATGAACCATTTCCATAGGTTGTCTGAAAATTTCCGTTGCTCCTTCGATRAGAAAATTGACGTCTACGTAGGTTTTATTCGTTGTAGATTTCTCGGAATCCCAAAACAAAATCATTTCTGGACGGCCAACGAAGGACTGGAAGGATTTGGGAATTTCTGATTTTCTAGAAATCATAATGGTATTTTTTGTGTTATGAAGACTGTCTCGATGGTATTGGAAATCTGAAAATTAATTTAAACTACAAAAATTCGGAATCTCTTATTTTCAGAAAACCGTGATCTATGGATTTCAGAATCTCAAAATCCTATAACAGTAGATTCTTAAAATATCAGAAACTTAAAATCTTAGAGCCTTGGAATCCCATAATTTAAGAATCTCAGGATTTCAGAATCCTAGAATTTCAGAATCCCAAAATTTAAGAATCTCAGTATCTCAGAATTTCAGAATCTCAGAATTCTTCGAAACTTGTTTGTGCAATAATTTTTTTTAATCTCACTACTAGTTTCCATTCCAACCGCGTAGCACTTTTGTAGACGACATGGTTTGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGTCACCAACTGATATTTTTG</pcr_primer_p1>
		<pcr_primer_p2>TAGAAAATCAGAAATTCCCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTGTCACCAACTGATATTTTTGATTTTTTCCTCTAACAGAATTCATTCCAACAGCTAATCTTTTCAATCGATTTTCAGTTAAATGAACCATTTCCATAGGTTGTCTGAAAATTTCCGTTGCTCCTTCGATAAGAAAATTGACGTCTACGTAGGTTTTATTCGTTGTAGATTTCTCGGAATCCCAAAACAAAATCATTTCTGGACGGCCAACGAAGGACTGGAAGGATTTGGGAATTTCTGATTTTCTA</canonical_amplicon>
		<polymorphic_amplicon>GTTGTCACCAACTGATATTTTTGATTTTTTCCTCTAACAGAATTCATTCCAACAGCTAATCTTTTCAATCGATTTTCAGTTAAATGAACCATTTCCATAGGTTGTCTGAAAATTTCCGTTGCTCCTTCGATRAGAAAATTGACGTCTACGTAGGTTTTATTCGTTGTAGATTTCTCGGAATCCCAAAACAAAATCATTTCTGGACGGCCAACGAAGGACTGGAAGGATTTGGGAATTTCTGATTTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30835</snp_id>
        <super_contig>c005600501.Contig1</super_contig>
        <contig_pos>212562</contig_pos>
        <strand></strand>
        <context>TGTGTTATGA[A/T]GACTGTCTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGGGAATTTCTGATTTTCTAGAAATCATAATGGTATTTTTTGTGTTATGA</left_flank>
        <right_flank>GACTGTCTCGATGGTATTGGAAATCTGAAAATTAATTTAAACTACAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAAAAGCCATCAAAGAACGGTGATCTAGGTTTTGCCAAACATGCCAGACAGTTTGGAGGATGGTTAGCTGGAAATTGTTTTTTTTTCAAAATTCAGAAATTCAGAAATTTACCTTCACTTCCATATCCAACTTCTCAAATTCCGTAAAATGCATCAACCATTTTGCTACAGTAATAAAATAAAACTGCCACATACTGGATATTTCCTTTTGCGATATAGTTGTCACCAACTGATATTTTTGATTTTTTCCTCTAACAGAATTCATTCCAACAGCTAATCTTTTCAATCGATTTTCAGTTAAATGAACCATTTCCATAGGTTGTCTGAAAATTTCCGTTGCTCCTTCGATAAGAAAATTGACGTCTACGTAGGTTTTATTCGTTGTAGATTTCTCGGAATCCCAAAACAAAATCATTTCTGGACGGCCAACGAAGGACTGGAAGGATTTGGGAATTTCTGATTTTCTAGAAATCATAATGGTATTTTTTGTGTTATGAAGACTGTCTCGATGGTATTGGAAATCTGAAAATTAATTTAAACTACAAAAATTCGGAATCTCTTATTTTCAGAAAACCGTGATCTATGGATTTCAGAATCTCAAAATCCTATAACAGTAGATTCTTAAAATATCAGAAACTTAAAATCTTAGAGCCTTGGAATCCCATAATTTAAGAATCTCAGGATTTCAGAATCCTAGAATTTCAGAATCCCAAAATTTAAGAATCTCAGTATCTCAGAATTTCAGAATCTCAGAATTCTTCGAAACTTGTTTGTGCAATAATTTTTTTTAATCTCACTACTAGTTTCCATTCCAACCGCGTAGCACTTTTGTAGACGACATGGTTTGCAATAATTTCTGAAAAAACTCGTAGATATATTTATATTTTTTCAGCTCAAAAAAACTCACAAATTCATATTGCACATTTTACTTTTACACTTCAAACTGTTCCATTTCGAAAATGCGGCTCTTCGAAAAAACGCGGCACAGGCGCGACAGC</canonical>
            <polymorphic>ATGAAAAGCCATCAAAGAACGGTGATCTAGGTTTTGCCAAACATGCCAGACAGTTTGGAGGATGGTTAGCTGGAAATTGTTTTTTTTTCAAAATTCAGAAATTCAGAAATTTACCTTCACTTCCATATCCAACTTCTCAAATTCCGTAAAATGCATCAACCATTTTGCTACAGTAATAAAATAAAACTGCCACATACTGGATATTTCCTTTTGCGATATAGTTGTCACCAACTGATATTTTTGATTTTTTCCTCTAACAGAATTCATTCCAACAGCTAATCTTTTCAATCGATTTTCAGTTAAATGAACCATTTCCATAGGTTGTCTGAAAATTTCCGTTGCTCCTTCGATAAGAAAATTGACGTCTACGTAGGTTTTATTCGTTGTAGATTTCTCGGAATCCCAAAACAAAATCATTTCTGGACGGCCAACGAAGGACTGGAAGGATTTGGGAATTTCTGATTTTCTAGAAATCATAATGGTATTTTTTGTGTTATGAWGACTGTCTCGATGGTATTGGAAATCTGAAAATTAATTTAAACTACAAAAATTCGGAATCTCTTATTTTCAGAAAACCGTGATCTATGGATTTCAGAATCTCAAAATCCTATAACAGTAGATTCTTAAAATATCAGAAACTTAAAATCTTAGAGCCTTGGAATCCCATAATTTAAGAATCTCAGGATTTCAGAATCCTAGAATTTCAGAATCCCAAAATTTAAGAATCTCAGTATCTCAGAATTTCAGAATCTCAGAATTCTTCGAAACTTGTTTGTGCAATAATTTTTTTTAATCTCACTACTAGTTTCCATTCCAACCGCGTAGCACTTTTGTAGACGACATGGTTTGCAATAATTTCTGAAAAAACTCGTAGATATATTTATATTTTTTCAGCTCAAAAAAACTCACAAATTCATATTGCACATTTTACTTTTACACTTCAAACTGTTCCATTTCGAAAATGCGGCTCTTCGAAAAAACGCGGCACAGGCGCGACAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCATAGGTTGTCTGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GAGATTCCGAATTTTTGTAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCCATAGGTTGTCTGAAAATTTCCGTTGCTCCTTCGATAAGAAAATTGACGTCTACGTAGGTTTTATTCGTTGTAGATTTCTCGGAATCCCAAAACAAAATCATTTCTGGACGGCCAACGAAGGACTGGAAGGATTTGGGAATTTCTGATTTTCTAGAAATCATAATGGTATTTTTTGTGTTATGAAGACTGTCTCGATGGTATTGGAAATCTGAAAATTAATTTAAACTACAAAAATTCGGAATCTC</canonical_amplicon>
		<polymorphic_amplicon>TTTCCATAGGTTGTCTGAAAATTTCCGTTGCTCCTTCGATAAGAAAATTGACGTCTACGTAGGTTTTATTCGTTGTAGATTTCTCGGAATCCCAAAACAAAATCATTTCTGGACGGCCAACGAAGGACTGGAAGGATTTGGGAATTTCTGATTTTCTAGAAATCATAATGGTATTTTTTGTGTTATGAWGACTGTCTCGATGGTATTGGAAATCTGAAAATTAATTTAAACTACAAAAATTCGGAATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30836</snp_id>
        <super_contig>c005600501.Contig1</super_contig>
        <contig_pos>290706</contig_pos>
        <strand>+</strand>
        <context>GACTACGTTC[C/T]GATGACTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAAAATTGATTTTAACGAAAACAATGGAAGTTTTAGACGACTACGTTC</left_flank>
        <right_flank>GATGACTTTTCTAATGGCAATGACTTTTCATATGGCTTATGTACAGTACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCGAGACAAATTTTCTCTTCCCAAAGGGTTCAATTAGTGTAAGTTCGATTTTCGGTTGAGAAATTTTTGGCTCTGACAATCTGACAAATTCGGCATTTCGCCAGAATTTAGTGAATAACAAATTATTTTTCCAAGCATTTCATTCTACTTGTTTTTGTCAAATTTGAATATTTCAATCAGACTTGAATCAAAATGTCTCTTCTAACATTTCTCATTTCGTTCTCCTACTCTCTGCCATCGATTATTCTGTATTTTTTGACAATTTACATAATTTTGAAACATCGAAAATATTTCAATTCCTCATTTTTCATTTTATACATTTTTGATGGAATTATGAATATTTTTACATTTCTAAACCTATTTTATATGATGCGATTGAGCAGTATTACTTGTGAAAATTGTCTGTTTTCGTTTTTGTACAAAATTGCTGGTGAGTTTCAGAAAATATTTAAAAATTGATTTTAACGAAAACAATGGAAGTTTTAGACGACTACGTTCCGATGACTTTTCTAATGGCAATGACTTTTCATATGGCTTATGTACAGTACTCCATTACGGCACTTATTTCGTTTAATCGATTGCCAGTTCTTTGGAATTACACCATTATGGAACCGGTACGAAAAAAAACTGACCATTTCGAATTTGAGTCTTTTAGAACCGATCTAAGAATCTAAGAATCTAAGAATGTTTTTAAAATGTTTGGAATAGTCAGCATGTTTTCAAAAACTTTCAAAAAAATTTAACTCCTAAATTTTGGAAAATTCTGAATTTCAAACCATTGAATCCTCAGAATTGCGAAATCTCAGAATAAAAAAATCTATAAGATGAATCCTTAAACAAATTGGTGATCATTTTTAGTGCAAAACGGCAGGTGTTTCTAATATACCTGCAAAGTTTCCAGAATACTTTTTTCTGAACTATAATTTCCAGATTTGGAAAAAATTCGCCTGGCTCATCATCCTAATCGTCTTCGCACTTCCATTCCTCGACACTTATCGT</canonical>
            <polymorphic>ACCGAGACAAATTTTCTCTTCCCAAAGGGTTCAATTAGTGTAAGTTCGATTTTCGGTTGAGAAATTTTTGGCTCTGACAATCTGACAAATTCGGCATTTCGCCAGAATTTAGTGAATAACAAATTATTTTTCCAAGCATTTCATTCTACTTGTTTTTGTCAAATTTGAATATTTCAATCAGACTTGAATCAAAATGTCTCTTCTAACATTTCTCATTTCGTTCTCCTACTCTCTGCCATCGATTATTCTGTATTTTTTGACAATTTACATAATTTTGAAACATCGAAAATATTTCAATTCCTCATTTTTCATTTTATACATTTTTGATGGAATTATGAATATTTTTACATTTCTAAACCTATTTTATATGATGCGATTGAGCAGTATTACTTGTGAAAATTGTCTGTTTTCGTTTTTGTACAAAATTGCTGGTGAGTTTCAGAAAATATTTAAAAATTGATTTTAACGAAAACAATGGAAGTTTTAGACGACTACGTTCYGATGACTTTTCTAATGGCAATGACTTTTCATATGGCTTATGTACAGTACTCCATTACGGCACTTATTTCGTTTAATCGATTGCCAGTTCTTTGGAATTACACCATTATGGAACCGGTACGAAAAAAAACTGACCATTTCGAATTTGAGTCTTTTAGAACCGATCTAAGAATCTAAGAATCTAAGAATGTTTTTAAAATGTTTGGAATAGTCAGCATGTTTTCAAAAACTTTCAAAAAAATTTAACTCCTAAATTTTGGAAAATTCTGAATTTCAAACCATTGAATCCTCAGAATTGCGAAATCTCAGAATAAAAAAATCTATAAGATGAATCCTTAAACAAATTGGTGATCATTTTTAGTGCAAAACGGCAGGTGTTTCTAATATACCTGCAAAGTTTCCAGAATACTTTTTTCTGAACTATAATTTCCAGATTTGGAAAAAATTCGCCTGGCTCATCATCCTAATCGTCTTCGCACTTCCATTCCTCGACACTTATCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTATTTTATATGATGCGATTG</pcr_primer_p1>
		<pcr_primer_p2>TAATGGTGTAATTCCAAAGAACT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACCTATTTTATATGATGCGATTGAGCAGTATTACTTGTGAAAATTGTCTGTTTTCGTTTTTGTACAAAATTGCTGGTGAGTTTCAGAAAATATTTAAAAATTGATTTTAACGAAAACAATGGAAGTTTTAGACGACTACGTTCCGATGACTTTTCTAATGGCAATGACTTTTCATATGGCTTATGTACAGTACTCCATTACGGCACTTATTTCGTTTAATCGATTGCCAGTTCTTTGGAATTACACCATTA</canonical_amplicon>
		<polymorphic_amplicon>ACCTATTTTATATGATGCGATTGAGCAGTATTACTTGTGAAAATTGTCTGTTTTCGTTTTTGTACAAAATTGCTGGTGAGTTTCAGAAAATATTTAAAAATTGATTTTAACGAAAACAATGGAAGTTTTAGACGACTACGTTCYGATGACTTTTCTAATGGCAATGACTTTTCATATGGCTTATGTACAGTACTCCATTACGGCACTTATTTCGTTTAATCGATTGCCAGTTCTTTGGAATTACACCATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30837</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>18917</contig_pos>
        <strand>+</strand>
        <context>CAAAATTTAG[A/T]AAAAAAAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATGAATAGCAAAAGGAAGGTTCTTGATATGAGGGACTTGCAAAATTTAG</left_flank>
        <right_flank>AAAAAAAGAAGCTCACATTTCCGTAAATCAGTAATTTCTAAATTTTATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAATTTAGTTAGGTTAAAATGTGTATTTCCTGATTTTCGTCAATTATTGGTCATTAGCCAGCTTTTTTTCTAAATTCGACACTGGTTTTCAACATTTCAACTCGATTTTCTCACAATTTTCGGCACGAATACGTGTGCAAAATAGTATCCGAATATTTTGGCATTCTTGGAGACCGTCGTTGAAATGCCCCAGGTTTCGGAAGAGGTCGCATTGGATACGCATCCTCAGATGAGACATCTGATGATGACGCCCACGGCATCTGGAGATTCAAAATGATGTGACGAAATTCTGAGAAGAGTACAAAATAGAGGATCATTGAGGTTTTCTAGAGATACAAAAGTTTGTTATTCTCTGATGAGAAATATTGAAATTCAGAGTTTGGTGGTGGCAAGTGGTCAAAACAAAACTGAAAATACAAAAAATTGAATTCGGTGATTTTAGGGAAAAATGAATAGCAAAAGGAAGGTTCTTGATATGAGGGACTTGCAAAATTTAGAAAAAAAAGAAGCTCACATTTCCGTAAATCAGTAATTTCTAAATTTTATGAACTCAGTCATGAAATCTAAATGTTCAGAAAACTTGGAATTGAGAAGTTTGAATCAATCAGATACTCCCAAAAGCAAAAAATGTCAGAAATCAAAATTGCATTTTCTAGCTCAAGGATATATTTTCAGATCAAATGCCATCGAGAACAAAGAAAAAGAAAAAGAAATGTGGCAATTTTGAAAAGCCGGATAAATTTCTGGCAGGATATCTTCAAATTTTAGGGGATAAGAAAAAAAAAGAAGAACACACATAAAAATTCGGAGTTGAATGACTTTTCTGGAAGCCTTCCATGCCCGTTTTTATAGCCTCAATTTTCTACTGTTCTTCTTCTATTTTTTTCTGTTCTTTCATTTTTTTTCCAGAAGCTTTCTCAGAAATAGAATCTAAAAATGAATGTGAGCAAAAATGTTGAAATTTGACACCTTCCTCTAACCAAAATGGTGATGATAGA</canonical>
            <polymorphic>ATAAATTTAGTTAGGTTAAAATGTGTATTTCCTGATTTTCGTCAATTATTGGTCATTAGCCAGCTTTTTTTCTAAATTCGACACTGGTTTTCAACATTTCAACTCGATTTTCTCACAATTTTCGGCACGAATACGTGTGCAAAATAGTATCCGAATATTTTGGCATTCTTGGAGACCGTCGTTGAAATGCCCCAGGTTTCGGAAGAGGTCGCATTGGATACGCATCCTCAGATGAGACATCTGATGATGACGCCCACGGCATCTGGAGATTCAAAATGATGTGACGAAATTCTGAGAAGAGTACAAAATAGAGGATCATTGAGGTTTTCTAGAGATACAAAAGTTTGTTATTCTCTGATGAGAAATATTGAAATTCAGAGTTTGGTGGTGGCAAGTGGTCAAAACAAAACTGAAAATACAAAAAATTGAATTCGGTGATTTTAGGGAAAAATGAATAGCAAAAGGAAGGTTCTTGATATGAGGGACTTGCAAAATTTAGWAAAAAAAGAAGCTCACATTTCCGTAAATCAGTAATTTCTAAATTTTATGAACTCAGTCATGAAATCTAAATGTTCAGAAAACTTGGAATTGAGAAGTTTGAATCAATCAGATACTCCCAAAAGCAAAAAATGTCAGAAATCAAAATTGCATTTTCTAGCTCAAGGATATATTTTCAGATCAAATGCCATCGAGAACAAAGAAAAAGAAAAAGAAATGTGGCAATTTTGAAAAGCCGGATAAATTTCTGGCAGGATATCTTCAAATTTTAGGGGATAAGAAAAAAAAAGAAGAACACACATAAAAATTCGGAGTTGAATGACTTTTCTGGAAGCCTTCCATGCCCGTTTTTATAGCCTCAATTTTCTACTGTTCTTCTTCTATTTTTTTCTGTTCTTTCATTTTTTTTCCAGAAGCTTTCTCAGAAATAGAATCTAAAAATGAATGTGAGCAAAAATGTTGAAATTTGACACCTTCCTCTAACCAAAATGGTGATGATAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGTTTGTTATTCTCTGATGA</pcr_primer_p1>
		<pcr_primer_p2>CCAAGTTTTCTGAACATTTAGATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGTTTGTTATTCTCTGATGAGAAATATTGAAATTCAGAGTTTGGTGGTGGCAAGTGGTCAAAACAAAACTGAAAATACAAAAAATTGAATTCGGTGATTTTAGGGAAAAATGAATAGCAAAAGGAAGGTTCTTGATATGAGGGACTTGCAAAATTTAGAAAAAAAAGAAGCTCACATTTCCGTAAATCAGTAATTTCTAAATTTTATGAACTCAGTCATGAAATCTAAATGTTCAGAAAACTTGG</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGTTTGTTATTCTCTGATGAGAAATATTGAAATTCAGAGTTTGGTGGTGGCAAGTGGTCAAAACAAAACTGAAAATACAAAAAATTGAATTCGGTGATTTTAGGGAAAAATGAATAGCAAAAGGAAGGTTCTTGATATGAGGGACTTGCAAAATTTAGWAAAAAAAGAAGCTCACATTTCCGTAAATCAGTAATTTCTAAATTTTATGAACTCAGTCATGAAATCTAAATGTTCAGAAAACTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30838</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>23148</contig_pos>
        <strand>+</strand>
        <context>ACCAGGAAAT[C/T]CTCCAAACAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCGTTTTCAGATTCTTTTCTTATTTTTACTGGGAATTCAACCAGGAAAT</left_flank>
        <right_flank>CTCCAAACATCACATTCTTTGTAGCTCGCAAAGAAAATTTTTATGGCAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAAAGAATGAGGCGGAACCTAAAAATTTTATGTACTGGCTCATGATGATCAAAAAGTCATTGTGTAAGAACATAAATTAGTAGTGCAGACAAAGAAAAGAGCGTATGCGTGTTTTGTCTGAATATCTGATGAACAGAAATAGTGCTTTGGGTATCAGGAATAGAAGAAAAATGGCATTGGTGTTGTTATTGATTCTGGTTTGAATGGAAAAGTAAATTTTCATGCTGGTTTGAGCGAAAGCACAATCAAAGCTCTCGCTGAAAAATGAAGTACTCCATTTCAAAAATTTTTTAAAGTTTCCAAAAAACTTCCAGTTTTTCAATATTTCGAAGAACACAAAAGTTTCTGTAACTTCGAAATTGAGTTATTACGAACGAACTCAAATATTACCTTTTTCGCCTACCCTCCAAACAACTTCGAAATACTTTTTGATTTACAGATAAGTTTTTCGTTTTCAGATTCTTTTCTTATTTTTACTGGGAATTCAACCAGGAAATTCTCCAAACATCACATTCTTTGTAGCTCGCAAAGAAAATTTTTATGGCAACAATTCAATTTTTGGTAAAACAAAAATCGTGGTGAAAATGTGATTTTTCCATTCACATTATCTTCAAAATACACAAAATAGGATAACAAAACAAATAGGTTATTTTTAGAAATCTTCTCGTCAAATCTATGAAATTACACCTGCACTAACAGTCTTCGAGGTAAATTATATTTTTAAAAATTGTTTTTACCTTTTCTACTAGAGATTAATGTTCTGAATGTTATCTTTAAAAAATTACTCACCACTTGTCGCCTCGGTTTCCGCTGACAGTCTACTATGACTGTGGCTATTGAGTTGTGGCGTCAGAAATGGAATCCTATCATCCATGTGACAATAGGACGATGCTCGAACTCGCATTAACTGGAATAAATGTAATTAAAAAAGGAAACGATGTGTATTTCAAATGGATATAGTTGGAAGAGTGAACCTAATTTTATATAAAAAATATATT</canonical>
            <polymorphic>AAGAAAGAATGAGGCGGAACCTAAAAATTTTATGTACTGGCTCATGATGATCAAAAAGTCATTGTGTAAGAACATAAATTAGTAGTGCAGACAAAGAAAAGAGCGTATGCGTGTTTTGTCTGAATATCTGATGAACAGAAATAGTGCTTTGGGTATCAGGAATAGAAGAAAAATGGCATTGGTGTTGTTATTGATTCTGGTTTGAATGGAAAAGTAAATTTTCATGCTGGTTTGAGCGAAAGCACAATCAAAGCTCTCGCTGAAAAATGAAGTACTCCATTTCAAAAATTTTTTAAAGTTTCCAAAAAACTTCCAGTTTTTCAATATTTCGAAGAACACAAAAGTTTCTGTAACTTCGAAATTGAGTTATTACGAACGAACTCAAATATTACCTTTTTCGCCTACCCTCCAAACAACTTCGAAATACTTTTTGATTTACAGATAAGTTTTTCGTTTTCAGATTCTTTTCTTATTTTTACTGGGAATTCAACCAGGAAATYCTCCAAACATCACATTCTTTGTAGCTCGCAAAGAAAATTTTTATGGCAACAATTCAATTTTTGGTAAAACAAAAATCGTGGTGAAAATGTGATTTTTCCATTCACATTATCTTCAAAATACACAAAATAGGATAACAAAACAAATAGGTTATTTTTAGAAATCTTCTCGTCAAATCTATGAAATTACACCTGCACTAACAGTCTTCGAGGTAAATTATATTTTTAAAAATTGTTTTTACCTTTTCTACTAGAGATTAATGTTCTGAATGTTATCTTTAAAAAATTACTCACCACTTGTCGCCTCGGTTTCCGCTGACAGTCTACTATGACTGTGGCTATTGAGTTGTGGCGTCAGAAATGGAATCCTATCATCCATGTGACAATAGGACGATGCTCGAACTCGCATTAACTGGAATAAATGTAATTAAAAAAGGAAACGATGTGTATTTCAAATGGATATAGTTGGAAGAGTGAACCTAATTTTATATAAAAAATATATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>465 197 191 70 39 25 13</canonical_bands>
                <polymorphic_bands>465 197 191 70 52 25</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>141 140 126 124 73 70 56 54 51 39 31 25 22 15 15 13 5</canonical_bands>
                <polymorphic_bands>141 140 126 124 73 70 56 54 52 51 31 25 22 15 15 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTTATTACGAACGAACTCAAA</pcr_primer_p1>
		<pcr_primer_p2>AGATAATGTGAATGGAAAAATCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAGTTATTACGAACGAACTCAAATATTACCTTTTTCGCCTACCCTCCAAACAACTTCGAAATACTTTTTGATTTACAGATAAGTTTTTCGTTTTCAGATTCTTTTCTTATTTTTACTGGGAATTCAACCAGGAAATTCTCCAAACATCACATTCTTTGTAGCTCGCAAAGAAAATTTTTATGGCAACAATTCAATTTTTGGTAAAACAAAAATCGTGGTGAAAATGTGATTTTTCCATTCACATTATCT</canonical_amplicon>
		<polymorphic_amplicon>GAGTTATTACGAACGAACTCAAATATTACCTTTTTCGCCTACCCTCCAAACAACTTCGAAATACTTTTTGATTTACAGATAAGTTTTTCGTTTTCAGATTCTTTTCTTATTTTTACTGGGAATTCAACCAGGAAATYCTCCAAACATCACATTCTTTGTAGCTCGCAAAGAAAATTTTTATGGCAACAATTCAATTTTTGGTAAAACAAAAATCGTGGTGAAAATGTGATTTTTCCATTCACATTATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30839</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>75464</contig_pos>
        <strand>+</strand>
        <context>CTGGCCTTGT[A/G]CCTCCTCAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAACCTTCTCTTCCCACTTCTTATTGCACATTGTACAAAACTGGCCTTGT</left_flank>
        <right_flank>CCTCCTCAAGATCCGTTGCCAGAGCGCTAGCGACCAAAAATGAAATAAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTCTGCACTAAACTCTCTCAACACATGCCACCTGTCGGTGAGCCATGTTTCAAACTATTCGCCGAATACTGGCCCGCCGGGATCAACGCAACAACTCTTGAAATTTGTGGAGCCCTTTATTTCTGTTAATTATGTTCCCGAAATGAAGTTGTTAACTTTTCAATTACAATACATATCGCACACAGTGTTTCCAAAATCAATGAGTTGTGGGCGGAAGGTGTCGAAGATTTTCCCAATGTCGAAGTTGTTGACCAGGGCCATACAACGAGGTTTAAGAGTAGCGTGAAGTTGAAAACATGCGAGGTTCTGGAAAAAAGACTAACTGCAAGCTTGCTGTTCATAATTTTAAAAGTCTAGGAACGTTCTAATTAGAATCTTTTTCTGAATTAAAGAACCTTAATTCCAAAACACTTACCAAATAAGCAGTAACCTCTGCCCAGCTATTCGGAACCTTCTCTTCCCACTTCTTATTGCACATTGTACAAAACTGGCCTTGTGCCTCCTCAAGATCCGTTGCCAGAGCGCTAGCGACCAAAAATGAAATAAGGATAAAGTACTTCATGGCGATAATACTGATAGTTGAGAAGAACTGATAGTGGGTATGGGGGAAGTGATAAGGCCAAAAGCTACATAAATTTGAAATTCAAATTCAAATAATTGAATATTCAATAGATTGATCAAACCAAAATGCTAATTTTATCTGTAAGTAAGAAGAGAAACAAAGAAATAATGTTAGCGAGAGTACATTTTCTTGAGAAACTTCTCATGGTGCTCATCTATAAAAAGAAAAAAGCTTGTTCAATTTCAACAACAAATCATGAAGTTGTCACTGGTTTTCTTCGTTCTTCTGGCTTTAATCGGGTTCACCTTTGCTTCCAAATGCGATTCCTGTAAGGCATCGGTCAAGGATATCAAGGATGGAAAGGGTCTCGCTTATATGGCCAATTTGACTACCAAGCAAATCGAGGACTATGTCACCAAGAATGTCAACGTAGGTG</canonical>
            <polymorphic>CTCTCTGCACTAAACTCTCTCAACACATGCCACCTGTCGGTGAGCCATGTTTCAAACTATTCGCCGAATACTGGCCCGCCGGGATCAACGCAACAACTCTTGAAATTTGTGGAGCCCTTTATTTCTGTTAATTATGTTCCCGAAATGAAGTTGTTAACTTTTCAATTACAATACATATCGCACACAGTGTTTCCAAAATCAATGAGTTGTGGGCGGAAGGTGTCGAAGATTTTCCCAATGTCGAAGTTGTTGACCAGGGCCATACAACGAGGTTTAAGAGTAGCGTGAAGTTGAAAACATGCGAGGTTCTGGAAAAAAGACTAACTGCAAGCTTGCTGTTCATAATTTTAAAAGTCTAGGAACGTTCTAATTAGAATCTTTTTCTGAATTAAAGAACCTTAATTCCAAAACACTTACCAAATAAGCAGTAACCTCTGCCCAGCTATTCGGAACCTTCTCTTCCCACTTCTTATTGCACATTGTACAAAACTGGCCTTGTRCCTCCTCAAGATCCGTTGCCAGAGCGCTAGCGACCAAAAATGAAATAAGGATAAAGTACTTCATGGCGATAATACTGATAGTTGAGAAGAACTGATAGTGGGTATGGGGGAAGTGATAAGGCCAAAAGCTACATAAATTTGAAATTCAAATTCAAATAATTGAATATTCAATAGATTGATCAAACCAAAATGCTAATTTTATCTGTAAGTAAGAAGAGAAACAAAGAAATAATGTTAGCGAGAGTACATTTTCTTGAGAAACTTCTCATGGTGCTCATCTATAAAAAGAAAAAAGCTTGTTCAATTTCAACAACAAATCATGAAGTTGTCACTGGTTTTCTTCGTTCTTCTGGCTTTAATCGGGTTCACCTTTGCTTCCAAATGCGATTCCTGTAAGGCATCGGTCAAGGATATCAAGGATGGAAAGGGTCTCGCTTATATGGCCAATTTGACTACCAAGCAAATCGAGGACTATGTCACCAAGAATGTCAACGTAGGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>158 125 111 100 71 69 65 58 53 37 23 22 21 16 15 12 11 10 9 7 5 2 0</canonical_bands>
                <polymorphic_bands>158 125 123 111 71 69 65 58 53 37 22 21 16 15 12 11 10 9 7 5 2 0</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAGAACCTTAATTCCAAAACA</pcr_primer_p1>
		<pcr_primer_p2>TTATGTAGCTTTTGGCCTTATC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TAAAGAACCTTAATTCCAAAACACTTACCAAATAAGCAGTAACCTCTGCCCAGCTATTCGGAACCTTCTCTTCCCACTTCTTATTGCACATTGTACAAAACTGGCCTTGTGCCTCCTCAAGATCCGTTGCCAGAGCGCTAGCGACCAAAAATGAAATAAGGATAAAGTACTTCATGGCGATAATACTGATAGTTGAGAAGAACTGATAGTGGGTATGGGGGAAGTGATAAGGCCAAAAGCTACATAA</canonical_amplicon>
		<polymorphic_amplicon>TAAAGAACCTTAATTCCAAAACACTTACCAAATAAGCAGTAACCTCTGCCCAGCTATTCGGAACCTTCTCTTCCCACTTCTTATTGCACATTGTACAAAACTGGCCTTGTRCCTCCTCAAGATCCGTTGCCAGAGCGCTAGCGACCAAAAATGAAATAAGGATAAAGTACTTCATGGCGATAATACTGATAGTTGAGAAGAACTGATAGTGGGTATGGGGGAAGTGATAAGGCCAAAAGCTACATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30840</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>91761</contig_pos>
        <strand></strand>
        <context>TTActaggga[G/T]ctatctttgc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAATATTGGAAGGAAAATATGCGCTAATTTGAAATTTTCTTACTAGGGA</left_flank>
        <right_flank>CTATCTTTGCATGATTCCGAGTGGCGATTCATGACCTATATCATTAGAAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAATAAATGAAGCAATTAAAAACACACAACCAACACAAGGAGAGGCAGTATATACTGGTCAAACATACACACATTTTTCTCTGCGCCCCTTCCAAGTTCCCCAACTCTCTTCAAGGAGCCGCCCATGGCTAGAGAGTGAGAGTGTGTCAGACAGTTGGGGCGCAAAAAAGTGTCCCTCTGCTGCCGGACGACAACGTGGCGCGCCTCTTTCTCTCTCTCTCTCTCACAGATTTTTTTCCTTCTCTCTGTCTCTTTTTTTGTTTTTTTTCCCTTAAATTCGCATAATTTTACAGCTTGGGCATTCATAATGGATGTGATCCTAGATTTTATTCGTGAAGTTTGGGGCGAAATTTTGGTAATTTCAAGTGCCTTTTTTCAATGGGTAATTTTGGGATATGTGTAATTTATGTAGTATTGGCGTGCATGTTTGATATATGTCGTGATCTTAAAATATTGGAAGGAAAATATGCGCTAATTTGAAATTTTCTTACTAGGGAGCTATCTTTGCATGATTCCGAGTGGCGATTCATGACCTATATCATTAGAAAGCCCATAAAATTCTAATTCGGAGCAGGTTTTCTGTTTTTGCGAAACGGCGGTGAGCTTCGGTTTTTCGAAATTTTAATAATTCTTTTCTCGAATATTTGTAGAACTTCTCATGTAGTATGTTTTATGATCAAGCTGATCAGATCAGCTGTGTCGATCTGATTCGTTTTCGCTAAAACAAAACGAGTACTCCACTCCACCCTACTGATTCAACATCTCACATAACTGATGGAATGTGTCTATGTCTCTTGTGTGTTGACCTCGATTCGGTGTACTTTTTCGCATCCTTCAAAACCTTTTTTATAATATCACCTTTTTTTCGGAAAGCGAGAGAGAGGGTGAGACGATCGCTGCATTTTTCTTCGCCGATGACAGTTTTTAATTGGGAAAAAATTGATTGATGAAAGGGATGGTGCAAAAATAATGTACTTTGAACCAGGGTACATTATCGG</canonical>
            <polymorphic>AGAAATAAATGAAGCAATTAAAAACACACAACCAACACAAGGAGAGGCAGTATATACTGGTCAAACATACACACATTTTTCTCTGCGCCCCTTCCAAGTTCCCCAACTCTCTTCAAGGAGCCGCCCATGGCTAGAGAGTGAGAGTGTGTCAGACAGTTGGGGCGCAAAAAAGTGTCCCTCTGCTGCCGGACGACAACGTGGCGCGCCTCTTTCTCTCTCTCTCTCTCACAGATTTTTTTCCTTCTCTCTGTCTCTTTTTTTGTTTTTTTTCCCTTAAATTCGCATAATTTTACAGCTTGGGCATTCATAATGGATGTGATCCTAGATTTTATTCGTGAAGTTTGGGGCGAAATTTTGGTAATTTCAAGTGCCTTTTTTCAATGGGTAATTTTGGGATATGTGTAATTTATGTAGTATTGGCGTGCATGTTTGATATATGTCGTGATCTTAAAATATTGGAAGGAAAATATGCGCTAATTTGAAATTTTCTTACTAGGGAKCTATCTTTGCATGATTCCGAGTGGCGATTCATGACCTATATCATTAGAAAGCCCATAAAATTCTAATTCGGAGCAGGTTTTCTGTTTTTGCGAAACGGCGGTGAGCTTCGGTTTTTCGAAATTTTAATAATTCTTTTCTCGAATATTTGTAGAACTTCTCATGTAGTATGTTTTATGATCAAGCTGATCAGATCAGCTGTGTCGATCTGATTCGTTTTCGCTAAAACAAAACGAGTACTCCACTCCACCCTACTGATTCAACATCTCACATAACTGATGGAATGTGTCTATGTCTCTTGTGTGTTGACCTCGATTCGGTGTACTTTTTCGCATCCTTCAAAACCTTTTTTATAATATCACCTTTTTTTCGGAAAGCGAGAGAGAGGGTGAGACGATCGCTGCATTTTTCTTCGCCGATGACAGTTTTTAATTGGGAAAAAATTGATTGATGAAAGGGATGGTGCAAAAATAATGTACTTTGAACCAGGGTACATTATCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>304 295 205 105 78 13</canonical_bands>
                <polymorphic_bands>310 304 295 78 13</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>304 205 165 120 78 54 51 13 10</canonical_bands>
                <polymorphic_bands>304 256 165 120 78 54 13 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCTTAAAATATTGGAAGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>GATCAGCTTGATCATAAAACATAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GATCTTAAAATATTGGAAGGAAAATATGCGCTAATTTGAAATTTTCTTACTAGGGAGCTATCTTTGCATGATTCCGAGTGGCGATTCATGACCTATATCATTAGAAAGCCCATAAAATTCTAATTCGGAGCAGGTTTTCTGTTTTTGCGAAACGGCGGTGAGCTTCGGTTTTTCGAAATTTTAATAATTCTTTTCTCGAATATTTGTAGAACTTCTCATGTAGTATGTTTTATGATCAAGCTGATC</canonical_amplicon>
		<polymorphic_amplicon>GATCTTAAAATATTGGAAGGAAAATATGCGCTAATTTGAAATTTTCTTACTAGGGAKCTATCTTTGCATGATTCCGAGTGGCGATTCATGACCTATATCATTAGAAAGCCCATAAAATTCTAATTCGGAGCAGGTTTTCTGTTTTTGCGAAACGGCGGTGAGCTTCGGTTTTTCGAAATTTTAATAATTCTTTTCTCGAATATTTGTAGAACTTCTCATGTAGTATGTTTTATGATCAAGCTGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30841</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>92196</contig_pos>
        <strand>+</strand>
        <context>TTTTAATTGG[A/G]AAAAAATTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGTGAGACGATCGCTGCATTTTTCTTCGCCGATGACAGTTTTTAATTGG</left_flank>
        <right_flank>AAAAAATTGATTGATGAAAGGGATGGTGCAAAAATAATGTACTTTGAACC</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGTCGTGATCTTAAAATATTGGAAGGAAAATATGCGCTAATTTGAAATTTTCTTACTAGGGAGCTATCTTTGCATGATTCCGAGTGGCGATTCATGACCTATATCATTAGAAAGCCCATAAAATTCTAATTCGGAGCAGGTTTTCTGTTTTTGCGAAACGGCGGTGAGCTTCGGTTTTTCGAAATTTTAATAATTCTTTTCTCGAATATTTGTAGAACTTCTCATGTAGTATGTTTTATGATCAAGCTGATCAGATCAGCTGTGTCGATCTGATTCGTTTTCGCTAAAACAAAACGAGTACTCCACTCCACCCTACTGATTCAACATCTCACATAACTGATGGAATGTGTCTATGTCTCTTGTGTGTTGACCTCGATTCGGTGTACTTTTTCGCATCCTTCAAAACCTTTTTTATAATATCACCTTTTTTTCGGAAAGCGAGAGAGAGGGTGAGACGATCGCTGCATTTTTCTTCGCCGATGACAGTTTTTAATTGGGAAAAAATTGATTGATGAAAGGGATGGTGCAAAAATAATGTACTTTGAACCAGGGTACATTATCGGTATTTTCTAGAATTTAGCAGATCAAGATTCAAAAGTTTTCGAAACTTCTTAAAATTCCATTCTTCTTCTTCTCTATCTTGTGCCGTCCGTTTTTTTTTTAAATTTCTCTATTGCTAGCTTTAAAAATCTCTCTTTTTGCAGGTCAGAAACATGGAAGACTCGGTGACCCTCTTGTTGGGCCTCGGTGGTGGACTGTTCACCACAATCGTCTTCTTCTTCATGTACATGCGCAATCGAGAGACCGCGTTTGAGCAGGTACTAAAAATGCGAGGATCTAGGAAAGCTCATTTCACCTAAAAACCATTTTCCAGCAATTCACCGCCGACCAAATCGCCGTCATATCCGACTCGGACAAGAAGAAGCAGCAACAGAAGAAGGGTGGCAAGAAGAGCACTACAGTTTCACCATCAAGTCTTCCGAATCCGCAGAAGCTGC</canonical>
            <polymorphic>TATGTCGTGATCTTAAAATATTGGAAGGAAAATATGCGCTAATTTGAAATTTTCTTACTAGGGAGCTATCTTTGCATGATTCCGAGTGGCGATTCATGACCTATATCATTAGAAAGCCCATAAAATTCTAATTCGGAGCAGGTTTTCTGTTTTTGCGAAACGGCGGTGAGCTTCGGTTTTTCGAAATTTTAATAATTCTTTTCTCGAATATTTGTAGAACTTCTCATGTAGTATGTTTTATGATCAAGCTGATCAGATCAGCTGTGTCGATCTGATTCGTTTTCGCTAAAACAAAACGAGTACTCCACTCCACCCTACTGATTCAACATCTCACATAACTGATGGAATGTGTCTATGTCTCTTGTGTGTTGACCTCGATTCGGTGTACTTTTTCGCATCCTTCAAAACCTTTTTTATAATATCACCTTTTTTTCGGAAAGCGAGAGAGAGGGTGAGACGATCGCTGCATTTTTCTTCGCCGATGACAGTTTTTAATTGGRAAAAAATTGATTGATGAAAGGGATGGTGCAAAAATAATGTACTTTGAACCAGGGTACATTATCGGTATTTTCTAGAATTTAGCAGATCAAGATTCAAAAGTTTTCGAAACTTCTTAAAATTCCATTCTTCTTCTTCTCTATCTTGTGCCGTCCGTTTTTTTTTTAAATTTCTCTATTGCTAGCTTTAAAAATCTCTCTTTTTGCAGGTCAGAAACATGGAAGACTCGGTGACCCTCTTGTTGGGCCTCGGTGGTGGACTGTTCACCACAATCGTCTTCTTCTTCATGTACATGCGCAATCGAGAGACCGCGTTTGAGCAGGTACTAAAAATGCGAGGATCTAGGAAAGCTCATTTCACCTAAAAACCATTTTCCAGCAATTCACCGCCGACCAAATCGCCGTCATATCCGACTCGGACAAGAAGAAGCAGCAACAGAAGAAGGGTGGCAAGAAGAGCACTACAGTTTCACCATCAAGTCTTCCGAATCCGCAGAAGCTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCTATGTCTCTTGTGTGTTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAATCTTGATCTGCTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTCTATGTCTCTTGTGTGTTGACCTCGATTCGGTGTACTTTTTCGCATCCTTCAAAACCTTTTTTATAATATCACCTTTTTTTCGGAAAGCGAGAGAGAGGGTGAGACGATCGCTGCATTTTTCTTCGCCGATGACAGTTTTTAATTGGGAAAAAATTGATTGATGAAAGGGATGGTGCAAAAATAATGTACTTTGAACCAGGGTACATTATCGGTATTTTCTAGAATTTAGCAGATCAAGATTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGTCTATGTCTCTTGTGTGTTGACCTCGATTCGGTGTACTTTTTCGCATCCTTCAAAACCTTTTTTATAATATCACCTTTTTTTCGGAAAGCGAGAGAGAGGGTGAGACGATCGCTGCATTTTTCTTCGCCGATGACAGTTTTTAATTGGRAAAAAATTGATTGATGAAAGGGATGGTGCAAAAATAATGTACTTTGAACCAGGGTACATTATCGGTATTTTCTAGAATTTAGCAGATCAAGATTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30842</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>92238</contig_pos>
        <strand></strand>
        <context>AAATAATGTA[C/A]TTTGAACCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTAATTGGGAAAAAATTGATTGATGAAAGGGATGGTGCAAAAATAATGTA</left_flank>
        <right_flank>TTTGAACCAGGGTACATTATCGGTATTTTCTAGAATTTAGCAGATCAAGA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAAATTTTCTTACTAGGGAGCTATCTTTGCATGATTCCGAGTGGCGATTCATGACCTATATCATTAGAAAGCCCATAAAATTCTAATTCGGAGCAGGTTTTCTGTTTTTGCGAAACGGCGGTGAGCTTCGGTTTTTCGAAATTTTAATAATTCTTTTCTCGAATATTTGTAGAACTTCTCATGTAGTATGTTTTATGATCAAGCTGATCAGATCAGCTGTGTCGATCTGATTCGTTTTCGCTAAAACAAAACGAGTACTCCACTCCACCCTACTGATTCAACATCTCACATAACTGATGGAATGTGTCTATGTCTCTTGTGTGTTGACCTCGATTCGGTGTACTTTTTCGCATCCTTCAAAACCTTTTTTATAATATCACCTTTTTTTCGGAAAGCGAGAGAGAGGGTGAGACGATCGCTGCATTTTTCTTCGCCGATGACAGTTTTTAATTGGGAAAAAATTGATTGATGAAAGGGATGGTGCAAAAATAATGTACTTTGAACCAGGGTACATTATCGGTATTTTCTAGAATTTAGCAGATCAAGATTCAAAAGTTTTCGAAACTTCTTAAAATTCCATTCTTCTTCTTCTCTATCTTGTGCCGTCCGTTTTTTTTTTAAATTTCTCTATTGCTAGCTTTAAAAATCTCTCTTTTTGCAGGTCAGAAACATGGAAGACTCGGTGACCCTCTTGTTGGGCCTCGGTGGTGGACTGTTCACCACAATCGTCTTCTTCTTCATGTACATGCGCAATCGAGAGACCGCGTTTGAGCAGGTACTAAAAATGCGAGGATCTAGGAAAGCTCATTTCACCTAAAAACCATTTTCCAGCAATTCACCGCCGACCAAATCGCCGTCATATCCGACTCGGACAAGAAGAAGCAGCAACAGAAGAAGGGTGGCAAGAAGAGCACTACAGTTTCACCATCAAGTCTTCCGAATCCGCAGAAGCTGCAACAGCAGCAACCAGCGAAGGTCTCTCCAGCACCACAGAAAC</canonical>
            <polymorphic>TTTGAAATTTTCTTACTAGGGAGCTATCTTTGCATGATTCCGAGTGGCGATTCATGACCTATATCATTAGAAAGCCCATAAAATTCTAATTCGGAGCAGGTTTTCTGTTTTTGCGAAACGGCGGTGAGCTTCGGTTTTTCGAAATTTTAATAATTCTTTTCTCGAATATTTGTAGAACTTCTCATGTAGTATGTTTTATGATCAAGCTGATCAGATCAGCTGTGTCGATCTGATTCGTTTTCGCTAAAACAAAACGAGTACTCCACTCCACCCTACTGATTCAACATCTCACATAACTGATGGAATGTGTCTATGTCTCTTGTGTGTTGACCTCGATTCGGTGTACTTTTTCGCATCCTTCAAAACCTTTTTTATAATATCACCTTTTTTTCGGAAAGCGAGAGAGAGGGTGAGACGATCGCTGCATTTTTCTTCGCCGATGACAGTTTTTAATTGGGAAAAAATTGATTGATGAAAGGGATGGTGCAAAAATAATGTAMTTTGAACCAGGGTACATTATCGGTATTTTCTAGAATTTAGCAGATCAAGATTCAAAAGTTTTCGAAACTTCTTAAAATTCCATTCTTCTTCTTCTCTATCTTGTGCCGTCCGTTTTTTTTTTAAATTTCTCTATTGCTAGCTTTAAAAATCTCTCTTTTTGCAGGTCAGAAACATGGAAGACTCGGTGACCCTCTTGTTGGGCCTCGGTGGTGGACTGTTCACCACAATCGTCTTCTTCTTCATGTACATGCGCAATCGAGAGACCGCGTTTGAGCAGGTACTAAAAATGCGAGGATCTAGGAAAGCTCATTTCACCTAAAAACCATTTTCCAGCAATTCACCGCCGACCAAATCGCCGTCATATCCGACTCGGACAAGAAGAAGCAGCAACAGAAGAAGGGTGGCAAGAAGAGCACTACAGTTTCACCATCAAGTCTTCCGAATCCGCAGAAGCTGCAACAGCAGCAACCAGCGAAGGTCTCTCCAGCACCACAGAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>259 233 220 154 85 34 15</canonical_bands>
                <polymorphic_bands>259 233 220 169 85 34</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>257 256 248 154 85</canonical_bands>
                <polymorphic_bands>402 257 256 85</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTCTATGTCTCTTGTGTGTTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAATCTTGATCTGCTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTCTATGTCTCTTGTGTGTTGACCTCGATTCGGTGTACTTTTTCGCATCCTTCAAAACCTTTTTTATAATATCACCTTTTTTTCGGAAAGCGAGAGAGAGGGTGAGACGATCGCTGCATTTTTCTTCGCCGATGACAGTTTTTAATTGGGAAAAAATTGATTGATGAAAGGGATGGTGCAAAAATAATGTACTTTGAACCAGGGTACATTATCGGTATTTTCTAGAATTTAGCAGATCAAGATTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGTCTATGTCTCTTGTGTGTTGACCTCGATTCGGTGTACTTTTTCGCATCCTTCAAAACCTTTTTTATAATATCACCTTTTTTTCGGAAAGCGAGAGAGAGGGTGAGACGATCGCTGCATTTTTCTTCGCCGATGACAGTTTTTAATTGGGAAAAAATTGATTGATGAAAGGGATGGTGCAAAAATAATGTAMTTTGAACCAGGGTACATTATCGGTATTTTCTAGAATTTAGCAGATCAAGATTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30843</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>147769</contig_pos>
        <strand>+</strand>
        <context>AAAATCTAGG[A/G]AGGACATCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGG</left_flank>
        <right_flank>AGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAGAGAAAAGATCCGTGGTTTCGATAGAACATCATCTTCGATCCCTTTTTGATTCCGTTTTCCTTGTAGAGCGAAGGAGAAATTGTAAGGGGTTCCGCACCCCTTATTTGGACATTCCTAAGGTTCATCCGAATTCCATTCGGATGACTCATAGGATCGCTAAGTCTCAAGGATTGCATCATCTTTCGATAGAGCATGGGATATAGAAGGCTCTTCAGATTCTGTCCAGGACAGACGCTGGGTCTCCCCCTTTTCCGTGTCTCTGCCATTAAAATCATCAATCGTGGCTCTGATCGAAATCCGTTCCATTATCGATTGGGACTTCGCATGTATCTGGCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTT</canonical>
            <polymorphic>TGGAGAGAAAAGATCCGTGGTTTCGATAGAACATCATCTTCGATCCCTTTTTGATTCCGTTTTCCTTGTAGAGCGAAGGAGAAATTGTAAGGGGTTCCGCACCCCTTATTTGGACATTCCTAAGGTTCATCCGAATTCCATTCGGATGACTCATAGGATCGCTAAGTCTCAAGGATTGCATCATCTTTCGATAGAGCATGGGATATAGAAGGCTCTTCAGATTCTGTCCAGGACAGACGCTGGGTCTCCCCCTTTTCCGTGTCTCTGCCATTAAAATCATCAATCGTGGCTCTGATCGAAATCCGTTCCATTATCGATTGGGACTTCGCATGTATCTGGCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGRAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGAAGAACTAGTGAAGATTTTA</pcr_primer_p1>
		<pcr_primer_p2>GTCTGTCCATTAATGAGCTACC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGAC</canonical_amplicon>
		<polymorphic_amplicon>GCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGRAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30844</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>147787</contig_pos>
        <strand>+</strand>
        <context>CATTCTCATC[C/T]AYCCATCAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATC</left_flank>
        <right_flank>ATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTTCGATAGAACATCATCTTCGATCCCTTTTTGATTCCGTTTTCCTTGTAGAGCGAAGGAGAAATTGTAAGGGGTTCCGCACCCCTTATTTGGACATTCCTAAGGTTCATCCGAATTCCATTCGGATGACTCATAGGATCGCTAAGTCTCAAGGATTGCATCATCTTTCGATAGAGCATGGGATATAGAAGGCTCTTCAGATTCTGTCCAGGACAGACGCTGGGTCTCCCCCTTTTCCGTGTCTCTGCCATTAAAATCATCAATCGTGGCTCTGATCGAAATCCGTTCCATTATCGATTGGGACTTCGCATGTATCTGGCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGT</canonical>
            <polymorphic>GGTTTCGATAGAACATCATCTTCGATCCCTTTTTGATTCCGTTTTCCTTGTAGAGCGAAGGAGAAATTGTAAGGGGTTCCGCACCCCTTATTTGGACATTCCTAAGGTTCATCCGAATTCCATTCGGATGACTCATAGGATCGCTAAGTCTCAAGGATTGCATCATCTTTCGATAGAGCATGGGATATAGAAGGCTCTTCAGATTCTGTCCAGGACAGACGCTGGGTCTCCCCCTTTTCCGTGTCTCTGCCATTAAAATCATCAATCGTGGCTCTGATCGAAATCCGTTCCATTATCGATTGGGACTTCGCATGTATCTGGCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCYATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGAAGAACTAGTGAAGATTTTA</pcr_primer_p1>
		<pcr_primer_p2>GTCTGTCCATTAATGAGCTACC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGAC</canonical_amplicon>
		<polymorphic_amplicon>GCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCYATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30845</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>147789</contig_pos>
        <strand>+</strand>
        <context>TTCTCATCYA[C/T]CCATCAACAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTA</left_flank>
        <right_flank>CCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGATAGAACATCATCTTCGATCCCTTTTTGATTCCGTTTTCCTTGTAGAGCGAAGGAGAAATTGTAAGGGGTTCCGCACCCCTTATTTGGACATTCCTAAGGTTCATCCGAATTCCATTCGGATGACTCATAGGATCGCTAAGTCTCAAGGATTGCATCATCTTTCGATAGAGCATGGGATATAGAAGGCTCTTCAGATTCTGTCCAGGACAGACGCTGGGTCTCCCCCTTTTCCGTGTCTCTGCCATTAAAATCATCAATCGTGGCTCTGATCGAAATCCGTTCCATTATCGATTGGGACTTCGCATGTATCTGGCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTC</canonical>
            <polymorphic>TTTCGATAGAACATCATCTTCGATCCCTTTTTGATTCCGTTTTCCTTGTAGAGCGAAGGAGAAATTGTAAGGGGTTCCGCACCCCTTATTTGGACATTCCTAAGGTTCATCCGAATTCCATTCGGATGACTCATAGGATCGCTAAGTCTCAAGGATTGCATCATCTTTCGATAGAGCATGGGATATAGAAGGCTCTTCAGATTCTGTCCAGGACAGACGCTGGGTCTCCCCCTTTTCCGTGTCTCTGCCATTAAAATCATCAATCGTGGCTCTGATCGAAATCCGTTCCATTATCGATTGGGACTTCGCATGTATCTGGCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTAYCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGAAGAACTAGTGAAGATTTTA</pcr_primer_p1>
		<pcr_primer_p2>GTCTGTCCATTAATGAGCTACC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGAC</canonical_amplicon>
		<polymorphic_amplicon>GCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTAYCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30846</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>147804</contig_pos>
        <strand>+</strand>
        <context>CAACAGTGCT[G/T]CGAGTATGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCT</left_flank>
        <right_flank>CGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTTCGATCCCTTTTTGATTCCGTTTTCCTTGTAGAGCGAAGGAGAAATTGTAAGGGGTTCCGCACCCCTTATTTGGACATTCCTAAGGTTCATCCGAATTCCATTCGGATGACTCATAGGATCGCTAAGTCTCAAGGATTGCATCATCTTTCGATAGAGCATGGGATATAGAAGGCTCTTCAGATTCTGTCCAGGACAGACGCTGGGTCTCCCCCTTTTCCGTGTCTCTGCCATTAAAATCATCAATCGTGGCTCTGATCGAAATCCGTTCCATTATCGATTGGGACTTCGCATGTATCTGGCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGG</canonical>
            <polymorphic>ATCTTCGATCCCTTTTTGATTCCGTTTTCCTTGTAGAGCGAAGGAGAAATTGTAAGGGGTTCCGCACCCCTTATTTGGACATTCCTAAGGTTCATCCGAATTCCATTCGGATGACTCATAGGATCGCTAAGTCTCAAGGATTGCATCATCTTTCGATAGAGCATGGGATATAGAAGGCTCTTCAGATTCTGTCCAGGACAGACGCTGGGTCTCCCCCTTTTCCGTGTCTCTGCCATTAAAATCATCAATCGTGGCTCTGATCGAAATCCGTTCCATTATCGATTGGGACTTCGCATGTATCTGGCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTKCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGAAGAACTAGTGAAGATTTTA</pcr_primer_p1>
		<pcr_primer_p2>TAGCATTTGAGTCTGTCCATTA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTA</canonical_amplicon>
		<polymorphic_amplicon>GCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTKCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30847</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>147909</contig_pos>
        <strand>+</strand>
        <context>MTAGGATTGC[C/T]TAAAATCTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGC</left_flank>
        <right_flank>TAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGGATGACTCATAGGATCGCTAAGTCTCAAGGATTGCATCATCTTTCGATAGAGCATGGGATATAGAAGGCTCTTCAGATTCTGTCCAGGACAGACGCTGGGTCTCCCCCTTTTCCGTGTCTCTGCCATTAAAATCATCAATCGTGGCTCTGATCGAAATCCGTTCCATTATCGATTGGGACTTCGCATGTATCTGGCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTATTGATTTGGTT</canonical>
            <polymorphic>TTCGGATGACTCATAGGATCGCTAAGTCTCAAGGATTGCATCATCTTTCGATAGAGCATGGGATATAGAAGGCTCTTCAGATTCTGTCCAGGACAGACGCTGGGTCTCCCCCTTTTCCGTGTCTCTGCCATTAAAATCATCAATCGTGGCTCTGATCGAAATCCGTTCCATTATCGATTGGGACTTCGCATGTATCTGGCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCYTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTATTGATTTGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>299 252 131 116 81 70 31 20</canonical_bands>
                <polymorphic_bands>299 252 151 131 116 31 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGCTCATTAATGGACAGACTC</pcr_primer_p1>
		<pcr_primer_p2>CAAACATTTTAGTATCACTTTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTG</canonical_amplicon>
		<polymorphic_amplicon>GTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCYTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30848</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>147972</contig_pos>
        <strand>+</strand>
        <context>TGGGACGAAY[C/T]CACGGAACGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAAT</left_flank>
        <right_flank>CACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATAGAAGGCTCTTCAGATTCTGTCCAGGACAGACGCTGGGTCTCCCCCTTTTCCGTGTCTCTGCCATTAAAATCATCAATCGTGGCTCTGATCGAAATCCGTTCCATTATCGATTGGGACTTCGCATGTATCTGGCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTATTGATTTGGTTTATCAAAAAATTTGAATAAGATTTAAAAAATTTGATTAAAATGCAAAAAATTTGACTAACATT</canonical>
            <polymorphic>TATAGAAGGCTCTTCAGATTCTGTCCAGGACAGACGCTGGGTCTCCCCCTTTTCCGTGTCTCTGCCATTAAAATCATCAATCGTGGCTCTGATCGAAATCCGTTCCATTATCGATTGGGACTTCGCATGTATCTGGCGAAGAACTAGTGAAGATTTTAGAAAATGATACTCAAGTTCCTAAAAGCGTCGTAATTATTGCTTTTTCTAATACCTATAACTAGCTGTGGACAAGAAAATGATACGTGAGGGCTACTGCAGATTCAAGGAAAGGATACTAGGATTGCCTAAAATCTAGGAAGGACATCATTCTCATCTATCCATCAACAGTGCTGCGAGTATGGGACGAACCCACGGAACGGTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATYCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTGAAACTAGTGTGATGGTACTTAGGAACTCAAAGGTCTACAGACAGATAAAGAGAGAATAGTAAACAGTTATCAAAATAATAATTATCATCTTCAGCTGTTCTCCGCCCGACCCATATCCTGATGCGTGTCGAGTTTTCTTCTCGTCTCCTGGTCCCTTCGAACTACTTAAATTGACATGCCTTCTGAAATTTTTGAGTTAAAAACTATATGTTCATATTAAATTACCGGCTAATCGCAAATGACCTCAACATTTTTCAGCTGCTGATGGGTGTGAGCTCTTCTGGTCCAACCTTCTCTTGATGATGCATTCTCTGAAAATGTATTGATTTGGTTTATCAAAAAATTTGAATAAGATTTAAAAAATTTGATTAAAATGCAAAAAATTTGACTAACATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>500 349 151</canonical_bands>
                <polymorphic_bands>651 349</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>494 355 151</canonical_bands>
                <polymorphic_bands>645 355</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 349 151</canonical_bands>
                <polymorphic_bands>651 349</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>472 241 119 86 33 32 17</canonical_bands>
                <polymorphic_bands>472 241 119 118 33 17</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>504 241 152 86 17</canonical_bands>
                <polymorphic_bands>590 241 152 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGCTCATTAATGGACAGACTC</pcr_primer_p1>
		<pcr_primer_p2>CAAACATTTTAGTATCACTTTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATCCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTG</canonical_amplicon>
		<polymorphic_amplicon>GTAGCTCATTAATGGACAGACTCAAATGCTAGAGGAAGGAGGACTACTGTAGATTCAAGGAAAGGTTACTAGGATTGCTTAAAATCTAGGGAGGACATCATTCTCATCCACCCATCAACAGTGCTTCGAGATGGGACGAATYCACGGAACGGTAGCTCATTAATGGACAGACTCAACTGCTGACGAAAGGATGAGTGAGGAGATTGCTAAAATGGAGATTGGAGGAAAGTGATACTAAAATGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30849</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>155687</contig_pos>
        <strand>+</strand>
        <context>ACGATTTGCG[C/G]TGTACTTGCT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCATCCGGAGAGCAAAGCTTTTGTCGGTTGGAAGCTTTGGACGATTTGCG</left_flank>
        <right_flank>TGTACTTGCTGTAAGTTAAATTTCATTAGAAAATTCCATTTTTTATTCGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACAGACTTTCCATTACTTTTTTCTGCTATTCTAACCTCAAAAAAAAACAATCAATTCAGATATGTCATTGGCTACGTTTTTCCTTGTCTTCACTTTTATCAATTTCCTTGCAATCACATTCAATATCTTCCTATTCATATTGATTTTCAAGTTGAATGACAAAAGTTGGTTGATTTTTTTAAAATTTTCAAAAAGTTTCCAACAGAAAAAAAACGCAATTTCAGCTCGCCACCCAACTATTTACATTTACAACACTATTATTGCAAATACTCTGGATACATTTTTCATTTTTATCACTTTTCTACTACCTCTTATATTCGATGAAAAGTTGTATATCGTGTTTCGAAATGTTTTCGGATCCACACTCACCTTTGTGTGCACATTCTTCTATGAGCATGTCTTCTATCTGACTCTTCCAATGATTATCCATCGATGTTGGCTGATTCGTCATCCGGAGAGCAAAGCTTTTGTCGGTTGGAAGCTTTGGACGATTTGCGGTGTACTTGCTGTAAGTTAAATTTCATTAGAAAATTCCATTTTTTATTCGAGGTCGTAGAACCTCTAATAAAAGAACCCCACACTGTCAATTTTGACCCGATTTATCTTGGCTCCTACCAAAGATAACAAACAGTGGTAACCTGAAAAAAAATTCTTCATAATACAAAAATCCTTGTCAATTCAAAATCTCTTCATACCTCTCCTTGGAACCGAAATAAACTTGGTCTAACTATAAGTTGAAGGTTTTGTCTACCGTAAAACCTGCAATAGAAGGATCCTCGACTTTGAGATGATTTTCGCCGGTTTCTGCCAGAGATATAAAAAAGTTATCAACTGATGAATTGTTTATCATCAGAAGTGTTTAGTCCGTTGGGGCATTCTAGATATCTTGCATAGGAGCCAAGAAAAACTAGCTCGACTGTGTGGGGGCCCTTCTATTACAGGTTTCGCGGTATTTTGCTAGTCGGGCACTTTGTGAAATTTTTTTGAGATAATTCAAG</canonical>
            <polymorphic>TTACAGACTTTCCATTACTTTTTTCTGCTATTCTAACCTCAAAAAAAAACAATCAATTCAGATATGTCATTGGCTACGTTTTTCCTTGTCTTCACTTTTATCAATTTCCTTGCAATCACATTCAATATCTTCCTATTCATATTGATTTTCAAGTTGAATGACAAAAGTTGGTTGATTTTTTTAAAATTTTCAAAAAGTTTCCAACAGAAAAAAAACGCAATTTCAGCTCGCCACCCAACTATTTACATTTACAACACTATTATTGCAAATACTCTGGATACATTTTTCATTTTTATCACTTTTCTACTACCTCTTATATTCGATGAAAAGTTGTATATCGTGTTTCGAAATGTTTTCGGATCCACACTCACCTTTGTGTGCACATTCTTCTATGAGCATGTCTTCTATCTGACTCTTCCAATGATTATCCATCGATGTTGGCTGATTCGTCATCCGGAGAGCAAAGCTTTTGTCGGTTGGAAGCTTTGGACGATTTGCGSTGTACTTGCTGTAAGTTAAATTTCATTAGAAAATTCCATTTTTTATTCGAGGTCGTAGAACCTCTAATAAAAGAACCCCACACTGTCAATTTTGACCCGATTTATCTTGGCTCCTACCAAAGATAACAAACAGTGGTAACCTGAAAAAAAATTCTTCATAATACAAAAATCCTTGTCAATTCAAAATCTCTTCATACCTCTCCTTGGAACCGAAATAAACTTGGTCTAACTATAAGTTGAAGGTTTTGTCTACCGTAAAACCTGCAATAGAAGGATCCTCGACTTTGAGATGATTTTCGCCGGTTTCTGCCAGAGATATAAAAAAGTTATCAACTGATGAATTGTTTATCATCAGAAGTGTTTAGTCCGTTGGGGCATTCTAGATATCTTGCATAGGAGCCAAGAAAAACTAGCTCGACTGTGTGGGGGCCCTTCTATTACAGGTTTCGCGGTATTTTGCTAGTCGGGCACTTTGTGAAATTTTTTTGAGATAATTCAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>225 120 115 94 78 63 53 45 44 42 24 23 23 22 8 7 4 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>225 198 115 94 63 53 45 44 42 24 23 23 22 8 7 4 2 2 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>380 250 248 122</canonical_bands>
                <polymorphic_bands>380 370 250</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGATTATCCATCGATGTTG</pcr_primer_p1>
		<pcr_primer_p2>CTTGATTTTGTTCAAGTTTGACT</pcr_primer_p2>
		<pcr_amplicon_size>602</pcr_amplicon_size>
		<canonical_amplicon>AATGATTATCCATCGATGTTGGCTGATTCGTCATCCGGAGAGCAAAGCTTTTGTCGGTTGGAAGCTTTGGACGATTTGCGGTGTACTTGCTGTAAGTTAAATT</canonical_amplicon>
		<polymorphic_amplicon>AATGATTATCCATCGATGTTGGCTGATTCGTCATCCGGAGAGCAAAGCTTTTGTCGGTTGGAAGCTTTGGACGATTTGCGSTGTACTTGCTGTAAGTTAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30850</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>155803</contig_pos>
        <strand></strand>
        <context>cttggctcct[A/G]ccaaagataa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATAAAAGAACCCCACACTGTCAATTTTGACCCGATTTATCTTGGCTCCT</left_flank>
        <right_flank>CCAAAGATAACAAACAGTGGTAACCTGAAAAAAAATTCTTCATAATACAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACATTCAATATCTTCCTATTCATATTGATTTTCAAGTTGAATGACAAAAGTTGGTTGATTTTTTTAAAATTTTCAAAAAGTTTCCAACAGAAAAAAAACGCAATTTCAGCTCGCCACCCAACTATTTACATTTACAACACTATTATTGCAAATACTCTGGATACATTTTTCATTTTTATCACTTTTCTACTACCTCTTATATTCGATGAAAAGTTGTATATCGTGTTTCGAAATGTTTTCGGATCCACACTCACCTTTGTGTGCACATTCTTCTATGAGCATGTCTTCTATCTGACTCTTCCAATGATTATCCATCGATGTTGGCTGATTCGTCATCCGGAGAGCAAAGCTTTTGTCGGTTGGAAGCTTTGGACGATTTGCGGTGTACTTGCTGTAAGTTAAATTTCATTAGAAAATTCCATTTTTTATTCGAGGTCGTAGAACCTCTAATAAAAGAACCCCACACTGTCAATTTTGACCCGATTTATCTTGGCTCCTACCAAAGATAACAAACAGTGGTAACCTGAAAAAAAATTCTTCATAATACAAAAATCCTTGTCAATTCAAAATCTCTTCATACCTCTCCTTGGAACCGAAATAAACTTGGTCTAACTATAAGTTGAAGGTTTTGTCTACCGTAAAACCTGCAATAGAAGGATCCTCGACTTTGAGATGATTTTCGCCGGTTTCTGCCAGAGATATAAAAAAGTTATCAACTGATGAATTGTTTATCATCAGAAGTGTTTAGTCCGTTGGGGCATTCTAGATATCTTGCATAGGAGCCAAGAAAAACTAGCTCGACTGTGTGGGGGCCCTTCTATTACAGGTTTCGCGGTATTTTGCTAGTCGGGCACTTTGTGAAATTTTTTTGAGATAATTCAAGTCAAACTTGAACAAAATCAAGGATACAGCCAAACGTTCCCCTCATTATAGCCACACGCTAGTTTATTTTATAGGCTATCTCCCTGATTTTTCTACTGATCCCATATTTATCATCAT</canonical>
            <polymorphic>CACATTCAATATCTTCCTATTCATATTGATTTTCAAGTTGAATGACAAAAGTTGGTTGATTTTTTTAAAATTTTCAAAAAGTTTCCAACAGAAAAAAAACGCAATTTCAGCTCGCCACCCAACTATTTACATTTACAACACTATTATTGCAAATACTCTGGATACATTTTTCATTTTTATCACTTTTCTACTACCTCTTATATTCGATGAAAAGTTGTATATCGTGTTTCGAAATGTTTTCGGATCCACACTCACCTTTGTGTGCACATTCTTCTATGAGCATGTCTTCTATCTGACTCTTCCAATGATTATCCATCGATGTTGGCTGATTCGTCATCCGGAGAGCAAAGCTTTTGTCGGTTGGAAGCTTTGGACGATTTGCGGTGTACTTGCTGTAAGTTAAATTTCATTAGAAAATTCCATTTTTTATTCGAGGTCGTAGAACCTCTAATAAAAGAACCCCACACTGTCAATTTTGACCCGATTTATCTTGGCTCCTRCCAAAGATAACAAACAGTGGTAACCTGAAAAAAAATTCTTCATAATACAAAAATCCTTGTCAATTCAAAATCTCTTCATACCTCTCCTTGGAACCGAAATAAACTTGGTCTAACTATAAGTTGAAGGTTTTGTCTACCGTAAAACCTGCAATAGAAGGATCCTCGACTTTGAGATGATTTTCGCCGGTTTCTGCCAGAGATATAAAAAAGTTATCAACTGATGAATTGTTTATCATCAGAAGTGTTTAGTCCGTTGGGGCATTCTAGATATCTTGCATAGGAGCCAAGAAAAACTAGCTCGACTGTGTGGGGGCCCTTCTATTACAGGTTTCGCGGTATTTTGCTAGTCGGGCACTTTGTGAAATTTTTTTGAGATAATTCAAGTCAAACTTGAACAAAATCAAGGATACAGCCAAACGTTCCCCTCATTATAGCCACACGCTAGTTTATTTTATAGGCTATCTCCCTGATTTTTCTACTGATCCCATATTTATCATCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTGTAAGTTAAATTTCATTAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TATCCTTGATTTTGTTCAAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>518</pcr_amplicon_size>
		<canonical_amplicon>GCTGTAAGTTAAATTTCATTAGAAAATTCCATTTTTTATTCGAGGTCGTAGAACCTCTAATAAAAGAACCCCACACTGTCAATTTTGACCCGATTTATCTTGGCTCCTACCAAAGATAACAAACAGTGGTAACCTGAAAAAAAATTCTTCATAATACAAAAATCCTTGTCAATTCAAAATCTCTTCATACCTCTCCTTGGAACCGAAATAAACTTGGTCTAACTATAAGTTGAAGGTTTTGTCTACCGTAAAACCTGCAATAGAAGGATCCTCGACTTTGAGATGATTTTCGCCGGTTTCTGCCAGAGATATAAAAAAGTTATCAACTGATGAATTGTTTATCATCAGAAGTGTTTAGTCCGTTGGGGCATTCTAGATATCTTGCATAGGAGCCAAGAAAAACTAGCTCGACTGTGTGGGGGCCCTTCTATTACAGGTTTCGCGGTATTTTGCTAGTCGGGCACTTTGTGAAATTTTTTTGAGATAATTCAAGTCAAACTTGAACAAAATCAAGGATA</canonical_amplicon>
		<polymorphic_amplicon>GCTGTAAGTTAAATTTCATTAGAAAATTCCATTTTTTATTCGAGGTCGTAGAACCTCTAATAAAAGAACCCCACACTGTCAATTTTGACCCGATTTATCTTGGCTCCTRCCAAAGATAACAAACAGTGGTAACCTGAAAAAAAATTCTTCATAATACAAAAATCCTTGTCAATTCAAAATCTCTTCATACCTCTCCTTGGAACCGAAATAAACTTGGTCTAACTATAAGTTGAAGGTTTTGTCTACCGTAAAACCTGCAATAGAAGGATCCTCGACTTTGAGATGATTTTCGCCGGTTTCTGCCAGAGATATAAAAAAGTTATCAACTGATGAATTGTTTATCATCAGAAGTGTTTAGTCCGTTGGGGCATTCTAGATATCTTGCATAGGAGCCAAGAAAAACTAGCTCGACTGTGTGGGGGCCCTTCTATTACAGGTTTCGCGGTATTTTGCTAGTCGGGCACTTTGTGAAATTTTTTTGAGATAATTCAAGTCAAACTTGAACAAAATCAAGGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30851</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>155814</contig_pos>
        <strand></strand>
        <context>ccaaagataa[C/A]aaacagtggt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CCCACACTGTCAATTTTGACCCGATTTATCTTGGCTCCTACCAAAGATAA</left_flank>
        <right_flank>AAACAGTGGTAACCTGAAAAAAAATTCTTCATAATACAAAAATCCTTGTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCCTATTCATATTGATTTTCAAGTTGAATGACAAAAGTTGGTTGATTTTTTTAAAATTTTCAAAAAGTTTCCAACAGAAAAAAAACGCAATTTCAGCTCGCCACCCAACTATTTACATTTACAACACTATTATTGCAAATACTCTGGATACATTTTTCATTTTTATCACTTTTCTACTACCTCTTATATTCGATGAAAAGTTGTATATCGTGTTTCGAAATGTTTTCGGATCCACACTCACCTTTGTGTGCACATTCTTCTATGAGCATGTCTTCTATCTGACTCTTCCAATGATTATCCATCGATGTTGGCTGATTCGTCATCCGGAGAGCAAAGCTTTTGTCGGTTGGAAGCTTTGGACGATTTGCGGTGTACTTGCTGTAAGTTAAATTTCATTAGAAAATTCCATTTTTTATTCGAGGTCGTAGAACCTCTAATAAAAGAACCCCACACTGTCAATTTTGACCCGATTTATCTTGGCTCCTACCAAAGATAACAAACAGTGGTAACCTGAAAAAAAATTCTTCATAATACAAAAATCCTTGTCAATTCAAAATCTCTTCATACCTCTCCTTGGAACCGAAATAAACTTGGTCTAACTATAAGTTGAAGGTTTTGTCTACCGTAAAACCTGCAATAGAAGGATCCTCGACTTTGAGATGATTTTCGCCGGTTTCTGCCAGAGATATAAAAAAGTTATCAACTGATGAATTGTTTATCATCAGAAGTGTTTAGTCCGTTGGGGCATTCTAGATATCTTGCATAGGAGCCAAGAAAAACTAGCTCGACTGTGTGGGGGCCCTTCTATTACAGGTTTCGCGGTATTTTGCTAGTCGGGCACTTTGTGAAATTTTTTTGAGATAATTCAAGTCAAACTTGAACAAAATCAAGGATACAGCCAAACGTTCCCCTCATTATAGCCACACGCTAGTTTATTTTATAGGCTATCTCCCTGATTTTTCTACTGATCCCATATTTATCATCATGCCCCGTTAAT</canonical>
            <polymorphic>TCTTCCTATTCATATTGATTTTCAAGTTGAATGACAAAAGTTGGTTGATTTTTTTAAAATTTTCAAAAAGTTTCCAACAGAAAAAAAACGCAATTTCAGCTCGCCACCCAACTATTTACATTTACAACACTATTATTGCAAATACTCTGGATACATTTTTCATTTTTATCACTTTTCTACTACCTCTTATATTCGATGAAAAGTTGTATATCGTGTTTCGAAATGTTTTCGGATCCACACTCACCTTTGTGTGCACATTCTTCTATGAGCATGTCTTCTATCTGACTCTTCCAATGATTATCCATCGATGTTGGCTGATTCGTCATCCGGAGAGCAAAGCTTTTGTCGGTTGGAAGCTTTGGACGATTTGCGGTGTACTTGCTGTAAGTTAAATTTCATTAGAAAATTCCATTTTTTATTCGAGGTCGTAGAACCTCTAATAAAAGAACCCCACACTGTCAATTTTGACCCGATTTATCTTGGCTCCTACCAAAGATAAMAAACAGTGGTAACCTGAAAAAAAATTCTTCATAATACAAAAATCCTTGTCAATTCAAAATCTCTTCATACCTCTCCTTGGAACCGAAATAAACTTGGTCTAACTATAAGTTGAAGGTTTTGTCTACCGTAAAACCTGCAATAGAAGGATCCTCGACTTTGAGATGATTTTCGCCGGTTTCTGCCAGAGATATAAAAAAGTTATCAACTGATGAATTGTTTATCATCAGAAGTGTTTAGTCCGTTGGGGCATTCTAGATATCTTGCATAGGAGCCAAGAAAAACTAGCTCGACTGTGTGGGGGCCCTTCTATTACAGGTTTCGCGGTATTTTGCTAGTCGGGCACTTTGTGAAATTTTTTTGAGATAATTCAAGTCAAACTTGAACAAAATCAAGGATACAGCCAAACGTTCCCCTCATTATAGCCACACGCTAGTTTATTTTATAGGCTATCTCCCTGATTTTTCTACTGATCCCATATTTATCATCATGCCCCGTTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTGTAAGTTAAATTTCATTAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TATCCTTGATTTTGTTCAAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>518</pcr_amplicon_size>
		<canonical_amplicon>GCTGTAAGTTAAATTTCATTAGAAAATTCCATTTTTTATTCGAGGTCGTAGAACCTCTAATAAAAGAACCCCACACTGTCAATTTTGACCCGATTTATCTTGGCTCCTACCAAAGATAACAAACAGTGGTAACCTGAAAAAAAATTCTTCATAATACAAAAATCCTTGTCAATTCAAAATCTCTTCATACCTCTCCTTGGAACCGAAATAAACTTGGTCTAACTATAAGTTGAAGGTTTTGTCTACCGTAAAACCTGCAATAGAAGGATCCTCGACTTTGAGATGATTTTCGCCGGTTTCTGCCAGAGATATAAAAAAGTTATCAACTGATGAATTGTTTATCATCAGAAGTGTTTAGTCCGTTGGGGCATTCTAGATATCTTGCATAGGAGCCAAGAAAAACTAGCTCGACTGTGTGGGGGCCCTTCTATTACAGGTTTCGCGGTATTTTGCTAGTCGGGCACTTTGTGAAATTTTTTTGAGATAATTCAAGTCAAACTTGAACAAAATCAAGGATA</canonical_amplicon>
		<polymorphic_amplicon>GCTGTAAGTTAAATTTCATTAGAAAATTCCATTTTTTATTCGAGGTCGTAGAACCTCTAATAAAAGAACCCCACACTGTCAATTTTGACCCGATTTATCTTGGCTCCTACCAAAGATAAMAAACAGTGGTAACCTGAAAAAAAATTCTTCATAATACAAAAATCCTTGTCAATTCAAAATCTCTTCATACCTCTCCTTGGAACCGAAATAAACTTGGTCTAACTATAAGTTGAAGGTTTTGTCTACCGTAAAACCTGCAATAGAAGGATCCTCGACTTTGAGATGATTTTCGCCGGTTTCTGCCAGAGATATAAAAAAGTTATCAACTGATGAATTGTTTATCATCAGAAGTGTTTAGTCCGTTGGGGCATTCTAGATATCTTGCATAGGAGCCAAGAAAAACTAGCTCGACTGTGTGGGGGCCCTTCTATTACAGGTTTCGCGGTATTTTGCTAGTCGGGCACTTTGTGAAATTTTTTTGAGATAATTCAAGTCAAACTTGAACAAAATCAAGGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30852</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>155837</contig_pos>
        <strand></strand>
        <context>cctgaaaaaa[A/C]attcttcata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTATCTTGGCTCCTACCAAAGATAACAAACAGTGGTAACCTGAAAAAA</left_flank>
        <right_flank>ATTCTTCATAATACAAAAATCCTTGTCAATTCAAAATCTCTTCATACCTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTTGAATGACAAAAGTTGGTTGATTTTTTTAAAATTTTCAAAAAGTTTCCAACAGAAAAAAAACGCAATTTCAGCTCGCCACCCAACTATTTACATTTACAACACTATTATTGCAAATACTCTGGATACATTTTTCATTTTTATCACTTTTCTACTACCTCTTATATTCGATGAAAAGTTGTATATCGTGTTTCGAAATGTTTTCGGATCCACACTCACCTTTGTGTGCACATTCTTCTATGAGCATGTCTTCTATCTGACTCTTCCAATGATTATCCATCGATGTTGGCTGATTCGTCATCCGGAGAGCAAAGCTTTTGTCGGTTGGAAGCTTTGGACGATTTGCGGTGTACTTGCTGTAAGTTAAATTTCATTAGAAAATTCCATTTTTTATTCGAGGTCGTAGAACCTCTAATAAAAGAACCCCACACTGTCAATTTTGACCCGATTTATCTTGGCTCCTACCAAAGATAACAAACAGTGGTAACCTGAAAAAAAATTCTTCATAATACAAAAATCCTTGTCAATTCAAAATCTCTTCATACCTCTCCTTGGAACCGAAATAAACTTGGTCTAACTATAAGTTGAAGGTTTTGTCTACCGTAAAACCTGCAATAGAAGGATCCTCGACTTTGAGATGATTTTCGCCGGTTTCTGCCAGAGATATAAAAAAGTTATCAACTGATGAATTGTTTATCATCAGAAGTGTTTAGTCCGTTGGGGCATTCTAGATATCTTGCATAGGAGCCAAGAAAAACTAGCTCGACTGTGTGGGGGCCCTTCTATTACAGGTTTCGCGGTATTTTGCTAGTCGGGCACTTTGTGAAATTTTTTTGAGATAATTCAAGTCAAACTTGAACAAAATCAAGGATACAGCCAAACGTTCCCCTCATTATAGCCACACGCTAGTTTATTTTATAGGCTATCTCCCTGATTTTTCTACTGATCCCATATTTATCATCATGCCCCGTTAATATCAATCAACGAGCTTTCGACTT</canonical>
            <polymorphic>AAGTTGAATGACAAAAGTTGGTTGATTTTTTTAAAATTTTCAAAAAGTTTCCAACAGAAAAAAAACGCAATTTCAGCTCGCCACCCAACTATTTACATTTACAACACTATTATTGCAAATACTCTGGATACATTTTTCATTTTTATCACTTTTCTACTACCTCTTATATTCGATGAAAAGTTGTATATCGTGTTTCGAAATGTTTTCGGATCCACACTCACCTTTGTGTGCACATTCTTCTATGAGCATGTCTTCTATCTGACTCTTCCAATGATTATCCATCGATGTTGGCTGATTCGTCATCCGGAGAGCAAAGCTTTTGTCGGTTGGAAGCTTTGGACGATTTGCGGTGTACTTGCTGTAAGTTAAATTTCATTAGAAAATTCCATTTTTTATTCGAGGTCGTAGAACCTCTAATAAAAGAACCCCACACTGTCAATTTTGACCCGATTTATCTTGGCTCCTACCAAAGATAACAAACAGTGGTAACCTGAAAAAAMATTCTTCATAATACAAAAATCCTTGTCAATTCAAAATCTCTTCATACCTCTCCTTGGAACCGAAATAAACTTGGTCTAACTATAAGTTGAAGGTTTTGTCTACCGTAAAACCTGCAATAGAAGGATCCTCGACTTTGAGATGATTTTCGCCGGTTTCTGCCAGAGATATAAAAAAGTTATCAACTGATGAATTGTTTATCATCAGAAGTGTTTAGTCCGTTGGGGCATTCTAGATATCTTGCATAGGAGCCAAGAAAAACTAGCTCGACTGTGTGGGGGCCCTTCTATTACAGGTTTCGCGGTATTTTGCTAGTCGGGCACTTTGTGAAATTTTTTTGAGATAATTCAAGTCAAACTTGAACAAAATCAAGGATACAGCCAAACGTTCCCCTCATTATAGCCACACGCTAGTTTATTTTATAGGCTATCTCCCTGATTTTTCTACTGATCCCATATTTATCATCATGCCCCGTTAATATCAATCAACGAGCTTTCGACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>334 329 172 118 34 13</canonical_bands>
                <polymorphic_bands>447 334 172 34 13</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>300 162 158 139 62 56 34 34 28 14 13</canonical_bands>
                <polymorphic_bands>300 162 158 139 90 56 34 34 14 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTGTAAGTTAAATTTCATTAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TATCCTTGATTTTGTTCAAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>518</pcr_amplicon_size>
		<canonical_amplicon>GCTGTAAGTTAAATTTCATTAGAAAATTCCATTTTTTATTCGAGGTCGTAGAACCTCTAATAAAAGAACCCCACACTGTCAATTTTGACCCGATTTATCTTGGCTCCTACCAAAGATAACAAACAGTGGTAACCTGAAAAAAAATTCTTCATAATACAAAAATCCTTGTCAATTCAAAATCTCTTCATACCTCTCCTTGGAACCGAAATAAACTTGGTCTAACTATAAGTTGAAGGTTTTGTCTACCGTAAAACCTGCAATAGAAGGATCCTCGACTTTGAGATGATTTTCGCCGGTTTCTGCCAGAGATATAAAAAAGTTATCAACTGATGAATTGTTTATCATCAGAAGTGTTTAGTCCGTTGGGGCATTCTAGATATCTTGCATAGGAGCCAAGAAAAACTAGCTCGACTGTGTGGGGGCCCTTCTATTACAGGTTTCGCGGTATTTTGCTAGTCGGGCACTTTGTGAAATTTTTTTGAGATAATTCAAGTCAAACTTGAACAAAATCAAGGATA</canonical_amplicon>
		<polymorphic_amplicon>GCTGTAAGTTAAATTTCATTAGAAAATTCCATTTTTTATTCGAGGTCGTAGAACCTCTAATAAAAGAACCCCACACTGTCAATTTTGACCCGATTTATCTTGGCTCCTACCAAAGATAACAAACAGTGGTAACCTGAAAAAAMATTCTTCATAATACAAAAATCCTTGTCAATTCAAAATCTCTTCATACCTCTCCTTGGAACCGAAATAAACTTGGTCTAACTATAAGTTGAAGGTTTTGTCTACCGTAAAACCTGCAATAGAAGGATCCTCGACTTTGAGATGATTTTCGCCGGTTTCTGCCAGAGATATAAAAAAGTTATCAACTGATGAATTGTTTATCATCAGAAGTGTTTAGTCCGTTGGGGCATTCTAGATATCTTGCATAGGAGCCAAGAAAAACTAGCTCGACTGTGTGGGGGCCCTTCTATTACAGGTTTCGCGGTATTTTGCTAGTCGGGCACTTTGTGAAATTTTTTTGAGATAATTCAAGTCAAACTTGAACAAAATCAAGGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30853</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>155980</contig_pos>
        <strand></strand>
        <context>ctttgagatg[A/T]ttttygccgg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTTTGTCTACCGTAAAACCTGCAATAGAAGGATCCTCGACTTTGAGATG</left_flank>
        <right_flank>TTTTCGCCGGTTTCTGCCAGAGATATAAAAAAGTTATCAACTGATGAATT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCACTTTTCTACTACCTCTTATATTCGATGAAAAGTTGTATATCGTGTTTCGAAATGTTTTCGGATCCACACTCACCTTTGTGTGCACATTCTTCTATGAGCATGTCTTCTATCTGACTCTTCCAATGATTATCCATCGATGTTGGCTGATTCGTCATCCGGAGAGCAAAGCTTTTGTCGGTTGGAAGCTTTGGACGATTTGCGGTGTACTTGCTGTAAGTTAAATTTCATTAGAAAATTCCATTTTTTATTCGAGGTCGTAGAACCTCTAATAAAAGAACCCCACACTGTCAATTTTGACCCGATTTATCTTGGCTCCTACCAAAGATAACAAACAGTGGTAACCTGAAAAAAAATTCTTCATAATACAAAAATCCTTGTCAATTCAAAATCTCTTCATACCTCTCCTTGGAACCGAAATAAACTTGGTCTAACTATAAGTTGAAGGTTTTGTCTACCGTAAAACCTGCAATAGAAGGATCCTCGACTTTGAGATGATTTTCGCCGGTTTCTGCCAGAGATATAAAAAAGTTATCAACTGATGAATTGTTTATCATCAGAAGTGTTTAGTCCGTTGGGGCATTCTAGATATCTTGCATAGGAGCCAAGAAAAACTAGCTCGACTGTGTGGGGGCCCTTCTATTACAGGTTTCGCGGTATTTTGCTAGTCGGGCACTTTGTGAAATTTTTTTGAGATAATTCAAGTCAAACTTGAACAAAATCAAGGATACAGCCAAACGTTCCCCTCATTATAGCCACACGCTAGTTTATTTTATAGGCTATCTCCCTGATTTTTCTACTGATCCCATATTTATCATCATGCCCCGTTAATATCAATCAACGAGCTTTCGACTTCGCCGTGGATTGTGAGCAAAAACATCCGGTATGTAGGTTTTCGTCATTCGACTAAAAATAAGTTCACCTGCCAAAGCCTTATAACTTCCCAGAAATAAAACCGACTTTTTCAGCTCACCCAGTTCCAAAATGATTTCCTGTTT</canonical>
            <polymorphic>TATCACTTTTCTACTACCTCTTATATTCGATGAAAAGTTGTATATCGTGTTTCGAAATGTTTTCGGATCCACACTCACCTTTGTGTGCACATTCTTCTATGAGCATGTCTTCTATCTGACTCTTCCAATGATTATCCATCGATGTTGGCTGATTCGTCATCCGGAGAGCAAAGCTTTTGTCGGTTGGAAGCTTTGGACGATTTGCGGTGTACTTGCTGTAAGTTAAATTTCATTAGAAAATTCCATTTTTTATTCGAGGTCGTAGAACCTCTAATAAAAGAACCCCACACTGTCAATTTTGACCCGATTTATCTTGGCTCCTACCAAAGATAACAAACAGTGGTAACCTGAAAAAAAATTCTTCATAATACAAAAATCCTTGTCAATTCAAAATCTCTTCATACCTCTCCTTGGAACCGAAATAAACTTGGTCTAACTATAAGTTGAAGGTTTTGTCTACCGTAAAACCTGCAATAGAAGGATCCTCGACTTTGAGATGWTTTTCGCCGGTTTCTGCCAGAGATATAAAAAAGTTATCAACTGATGAATTGTTTATCATCAGAAGTGTTTAGTCCGTTGGGGCATTCTAGATATCTTGCATAGGAGCCAAGAAAAACTAGCTCGACTGTGTGGGGGCCCTTCTATTACAGGTTTCGCGGTATTTTGCTAGTCGGGCACTTTGTGAAATTTTTTTGAGATAATTCAAGTCAAACTTGAACAAAATCAAGGATACAGCCAAACGTTCCCCTCATTATAGCCACACGCTAGTTTATTTTATAGGCTATCTCCCTGATTTTTCTACTGATCCCATATTTATCATCATGCCCCGTTAATATCAATCAACGAGCTTTCGACTTCGCCGTGGATTGTGAGCAAAAACATCCGGTATGTAGGTTTTCGTCATTCGACTAAAAATAAGTTCACCTGCCAAAGCCTTATAACTTCCCAGAAATAAAACCGACTTTTTCAGCTCACCCAGTTCCAAAATGATTTCCTGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTGTAAGTTAAATTTCATTAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TATCCTTGATTTTGTTCAAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>518</pcr_amplicon_size>
		<canonical_amplicon>GCTGTAAGTTAAATTTCATTAGAAAATTCCATTTTTTATTCGAGGTCGTAGAACCTCTAATAAAAGAACCCCACACTGTCAATTTTGACCCGATTTATCTTGGCTCCTACCAAAGATAACAAACAGTGGTAACCTGAAAAAAAATTCTTCATAATACAAAAATCCTTGTCAATTCAAAATCTCTTCATACCTCTCCTTGGAACCGAAATAAACTTGGTCTAACTATAAGTTGAAGGTTTTGTCTACCGTAAAACCTGCAATAGAAGGATCCTCGACTTTGAGATGATTTTCGCCGGTTTCTGCCAGAGATATAAAAAAGTTATCAACTGATGAATTGTTTATCATCAGAAGTGTTTAGTCCGTTGGGGCATTCTAGATATCTTGCATAGGAGCCAAGAAAAACTAGCTCGACTGTGTGGGGGCCCTTCTATTACAGGTTTCGCGGTATTTTGCTAGTCGGGCACTTTGTGAAATTTTTTTGAGATAATTCAAGTCAAACTTGAACAAAATCAAGGATA</canonical_amplicon>
		<polymorphic_amplicon>GCTGTAAGTTAAATTTCATTAGAAAATTCCATTTTTTATTCGAGGTCGTAGAACCTCTAATAAAAGAACCCCACACTGTCAATTTTGACCCGATTTATCTTGGCTCCTACCAAAGATAACAAACAGTGGTAACCTGAAAAAAAATTCTTCATAATACAAAAATCCTTGTCAATTCAAAATCTCTTCATACCTCTCCTTGGAACCGAAATAAACTTGGTCTAACTATAAGTTGAAGGTTTTGTCTACCGTAAAACCTGCAATAGAAGGATCCTCGACTTTGAGATGWTTTTCGCCGGTTTCTGCCAGAGATATAAAAAAGTTATCAACTGATGAATTGTTTATCATCAGAAGTGTTTAGTCCGTTGGGGCATTCTAGATATCTTGCATAGGAGCCAAGAAAAACTAGCTCGACTGTGTGGGGGCCCTTCTATTACAGGTTTCGCGGTATTTTGCTAGTCGGGCACTTTGTGAAATTTTTTTGAGATAATTCAAGTCAAACTTGAACAAAATCAAGGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30854</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>155985</contig_pos>
        <strand></strand>
        <context>agatgwtttt[C/T]gccggtttct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCTACCGTAAAACCTGCAATAGAAGGATCCTCGACTTTGAGATGATTTT</left_flank>
        <right_flank>GCCGGTTTCTGCCAGAGATATAAAAAAGTTATCAACTGATGAATTGTTTA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTCTACTACCTCTTATATTCGATGAAAAGTTGTATATCGTGTTTCGAAATGTTTTCGGATCCACACTCACCTTTGTGTGCACATTCTTCTATGAGCATGTCTTCTATCTGACTCTTCCAATGATTATCCATCGATGTTGGCTGATTCGTCATCCGGAGAGCAAAGCTTTTGTCGGTTGGAAGCTTTGGACGATTTGCGGTGTACTTGCTGTAAGTTAAATTTCATTAGAAAATTCCATTTTTTATTCGAGGTCGTAGAACCTCTAATAAAAGAACCCCACACTGTCAATTTTGACCCGATTTATCTTGGCTCCTACCAAAGATAACAAACAGTGGTAACCTGAAAAAAAATTCTTCATAATACAAAAATCCTTGTCAATTCAAAATCTCTTCATACCTCTCCTTGGAACCGAAATAAACTTGGTCTAACTATAAGTTGAAGGTTTTGTCTACCGTAAAACCTGCAATAGAAGGATCCTCGACTTTGAGATGATTTTCGCCGGTTTCTGCCAGAGATATAAAAAAGTTATCAACTGATGAATTGTTTATCATCAGAAGTGTTTAGTCCGTTGGGGCATTCTAGATATCTTGCATAGGAGCCAAGAAAAACTAGCTCGACTGTGTGGGGGCCCTTCTATTACAGGTTTCGCGGTATTTTGCTAGTCGGGCACTTTGTGAAATTTTTTTGAGATAATTCAAGTCAAACTTGAACAAAATCAAGGATACAGCCAAACGTTCCCCTCATTATAGCCACACGCTAGTTTATTTTATAGGCTATCTCCCTGATTTTTCTACTGATCCCATATTTATCATCATGCCCCGTTAATATCAATCAACGAGCTTTCGACTTCGCCGTGGATTGTGAGCAAAAACATCCGGTATGTAGGTTTTCGTCATTCGACTAAAAATAAGTTCACCTGCCAAAGCCTTATAACTTCCCAGAAATAAAACCGACTTTTTCAGCTCACCCAGTTCCAAAATGATTTCCTGTTTGTAAT</canonical>
            <polymorphic>CTTTTCTACTACCTCTTATATTCGATGAAAAGTTGTATATCGTGTTTCGAAATGTTTTCGGATCCACACTCACCTTTGTGTGCACATTCTTCTATGAGCATGTCTTCTATCTGACTCTTCCAATGATTATCCATCGATGTTGGCTGATTCGTCATCCGGAGAGCAAAGCTTTTGTCGGTTGGAAGCTTTGGACGATTTGCGGTGTACTTGCTGTAAGTTAAATTTCATTAGAAAATTCCATTTTTTATTCGAGGTCGTAGAACCTCTAATAAAAGAACCCCACACTGTCAATTTTGACCCGATTTATCTTGGCTCCTACCAAAGATAACAAACAGTGGTAACCTGAAAAAAAATTCTTCATAATACAAAAATCCTTGTCAATTCAAAATCTCTTCATACCTCTCCTTGGAACCGAAATAAACTTGGTCTAACTATAAGTTGAAGGTTTTGTCTACCGTAAAACCTGCAATAGAAGGATCCTCGACTTTGAGATGATTTTYGCCGGTTTCTGCCAGAGATATAAAAAAGTTATCAACTGATGAATTGTTTATCATCAGAAGTGTTTAGTCCGTTGGGGCATTCTAGATATCTTGCATAGGAGCCAAGAAAAACTAGCTCGACTGTGTGGGGGCCCTTCTATTACAGGTTTCGCGGTATTTTGCTAGTCGGGCACTTTGTGAAATTTTTTTGAGATAATTCAAGTCAAACTTGAACAAAATCAAGGATACAGCCAAACGTTCCCCTCATTATAGCCACACGCTAGTTTATTTTATAGGCTATCTCCCTGATTTTTCTACTGATCCCATATTTATCATCATGCCCCGTTAATATCAATCAACGAGCTTTCGACTTCGCCGTGGATTGTGAGCAAAAACATCCGGTATGTAGGTTTTCGTCATTCGACTAAAAATAAGTTCACCTGCCAAAGCCTTATAACTTCCCAGAAATAAAACCGACTTTTTCAGCTCACCCAGTTCCAAAATGATTTCCTGTTTGTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTGTAAGTTAAATTTCATTAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TATCCTTGATTTTGTTCAAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>518</pcr_amplicon_size>
		<canonical_amplicon>GCTGTAAGTTAAATTTCATTAGAAAATTCCATTTTTTATTCGAGGTCGTAGAACCTCTAATAAAAGAACCCCACACTGTCAATTTTGACCCGATTTATCTTGGCTCCTACCAAAGATAACAAACAGTGGTAACCTGAAAAAAAATTCTTCATAATACAAAAATCCTTGTCAATTCAAAATCTCTTCATACCTCTCCTTGGAACCGAAATAAACTTGGTCTAACTATAAGTTGAAGGTTTTGTCTACCGTAAAACCTGCAATAGAAGGATCCTCGACTTTGAGATGATTTTCGCCGGTTTCTGCCAGAGATATAAAAAAGTTATCAACTGATGAATTGTTTATCATCAGAAGTGTTTAGTCCGTTGGGGCATTCTAGATATCTTGCATAGGAGCCAAGAAAAACTAGCTCGACTGTGTGGGGGCCCTTCTATTACAGGTTTCGCGGTATTTTGCTAGTCGGGCACTTTGTGAAATTTTTTTGAGATAATTCAAGTCAAACTTGAACAAAATCAAGGATA</canonical_amplicon>
		<polymorphic_amplicon>GCTGTAAGTTAAATTTCATTAGAAAATTCCATTTTTTATTCGAGGTCGTAGAACCTCTAATAAAAGAACCCCACACTGTCAATTTTGACCCGATTTATCTTGGCTCCTACCAAAGATAACAAACAGTGGTAACCTGAAAAAAAATTCTTCATAATACAAAAATCCTTGTCAATTCAAAATCTCTTCATACCTCTCCTTGGAACCGAAATAAACTTGGTCTAACTATAAGTTGAAGGTTTTGTCTACCGTAAAACCTGCAATAGAAGGATCCTCGACTTTGAGATGATTTTYGCCGGTTTCTGCCAGAGATATAAAAAAGTTATCAACTGATGAATTGTTTATCATCAGAAGTGTTTAGTCCGTTGGGGCATTCTAGATATCTTGCATAGGAGCCAAGAAAAACTAGCTCGACTGTGTGGGGGCCCTTCTATTACAGGTTTCGCGGTATTTTGCTAGTCGGGCACTTTGTGAAATTTTTTTGAGATAATTCAAGTCAAACTTGAACAAAATCAAGGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30855</snp_id>
        <super_contig>c005600513.Contig1</super_contig>
        <contig_pos>168667</contig_pos>
        <strand>+</strand>
        <context>TTAGTTTGCT[C/T]CTTTGGAGTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGAGCAACTGTTATGGTTGCTAGGAATGGATCAGTCGATTAGTTTGCT</left_flank>
        <right_flank>CTTTGGAGTGATGCTGATGACCATGTTACTAACTGGACTCCTATCATAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACATGATTTAAAACACTTGTATAGAAAAATTTCAACATTTACATCTGGAATATATCGGACCATTTCATCAGATTCCATATTTCAGCCATTAAAATCAACTTCCGTTCTAATGAAGTTGTCCGACCGGTGCTCCAGGATCTCTACGCCAGTCAAGCCGATCCAACATCTCCTGTTCTACAGTACCCCGTGATTCTCCATGCGAATGTGTTCAGATCGCCCAGGAGTGTGGAGACCGAAGTCGACCCAACAACTTTTGTCGAGAAGGCAAAAGATCTGTTCCCAGATGCCACGTTATCCTTGGGGTGGACCAAGCAGTCGGATTTCAGTCATTTGCACCCGAAGTATAAGAAATTGTCCTGGCGTCAACTATTCCATATTCTGGAGTATATCAGTAGACTGGACCAGCCGGTGATGTTATCCGTGAGACTCTCTGTGGCTGCTCACTCCAAAGAGCAACTGTTATGGTTGCTAGGAATGGATCAGTCGATTAGTTTGCTCCTTTGGAGTGATGCTGATGACCATGTTACTAACTGGACTCCTATCATAGAGCTTCGTCGCTCCACCACCAAAAATCGAATTCTCTATGACCTGGACCCTAAGCACAGAAAGTTCTTGCAGACCGAGTCGAATGATCCAATAGTGGTAGTTTGAAAATTTAAATCTCTTCTCACACGCATAATTAATTTTCAGACCCCACCTACATTCTCCCTACAAGACTGGCAAGCCGTGGAGTTTTCATCTTCTGGATCTCAACTTTCTACAGTAGTCCGATCAGAGAAAGGACCCGCATTCCTTGGAGAACCCACTGCACTTTTGCTCTCCAAAATTCCACCTCCAAACTTCCCATCAAAGCAGAAAATCAGTGGAAAAGTACATTTCCTGCCGAAGAAGGGAATGGAAAATGTGGATTTGGATGAGAATAGTGGAGTGTCGATTTATCTAATGGATAAAGTTCAGGACATTGATTCTCCAAAAATTAAAAACTCTTTAGAGGCGAG</canonical>
            <polymorphic>TCACATGATTTAAAACACTTGTATAGAAAAATTTCAACATTTACATCTGGAATATATCGGACCATTTCATCAGATTCCATATTTCAGCCATTAAAATCAACTTCCGTTCTAATGAAGTTGTCCGACCGGTGCTCCAGGATCTCTACGCCAGTCAAGCCGATCCAACATCTCCTGTTCTACAGTACCCCGTGATTCTCCATGCGAATGTGTTCAGATCGCCCAGGAGTGTGGAGACCGAAGTCGACCCAACAACTTTTGTCGAGAAGGCAAAAGATCTGTTCCCAGATGCCACGTTATCCTTGGGGTGGACCAAGCAGTCGGATTTCAGTCATTTGCACCCGAAGTATAAGAAATTGTCCTGGCGTCAACTATTCCATATTCTGGAGTATATCAGTAGACTGGACCAGCCGGTGATGTTATCCGTGAGACTCTCTGTGGCTGCTCACTCCAAAGAGCAACTGTTATGGTTGCTAGGAATGGATCAGTCGATTAGTTTGCTYCTTTGGAGTGATGCTGATGACCATGTTACTAACTGGACTCCTATCATAGAGCTTCGTCGCTCCACCACCAAAAATCGAATTCTCTATGACCTGGACCCTAAGCACAGAAAGTTCTTGCAGACCGAGTCGAATGATCCAATAGTGGTAGTTTGAAAATTTAAATCTCTTCTCACACGCATAATTAATTTTCAGACCCCACCTACATTCTCCCTACAAGACTGGCAAGCCGTGGAGTTTTCATCTTCTGGATCTCAACTTTCTACAGTAGTCCGATCAGAGAAAGGACCCGCATTCCTTGGAGAACCCACTGCACTTTTGCTCTCCAAAATTCCACCTCCAAACTTCCCATCAAAGCAGAAAATCAGTGGAAAAGTACATTTCCTGCCGAAGAAGGGAATGGAAAATGTGGATTTGGATGAGAATAGTGGAGTGTCGATTTATCTAATGGATAAAGTTCAGGACATTGATTCTCCAAAAATTAAAAACTCTTTAGAGGCGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTCCAAAGAGCAACTGTTAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTAATTATGCGTGTGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACTCCAAAGAGCAACTGTTATGGTTGCTAGGAATGGATCAGTCGATTAGTTTGCTCCTTTGGAGTGATGCTGATGACCATGTTACTAACTGGACTCCTATCATAGAGCTTCGTCGCTCCACCACCAAAAATCGAATTCTCTATGACCTGGACCCTAAGCACAGAAAGTTCTTGCAGACCGAGTCGAATGATCCAATAGTGGTAGTTTGAAAATTTAAATCTCTTCTCACACGCATAATTAATTT</canonical_amplicon>
		<polymorphic_amplicon>CACTCCAAAGAGCAACTGTTATGGTTGCTAGGAATGGATCAGTCGATTAGTTTGCTYCTTTGGAGTGATGCTGATGACCATGTTACTAACTGGACTCCTATCATAGAGCTTCGTCGCTCCACCACCAAAAATCGAATTCTCTATGACCTGGACCCTAAGCACAGAAAGTTCTTGCAGACCGAGTCGAATGATCCAATAGTGGTAGTTTGAAAATTTAAATCTCTTCTCACACGCATAATTAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30856</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>5865</contig_pos>
        <strand>+</strand>
        <context>ATCATTTTCC[A/G]ATCTCCCAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGAATTGGACTAATATCCAACTTGATTCTGATAAACCTTATCATTTTCC</left_flank>
        <right_flank>ATCTCCCAAAGATTTAGGACTCTATAAGTACCTAATGGCTTATATCATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGTCATGGATGCATATTCAATTGAACAATGAACTTGTTGTTTTGGTATTTTTTTTTAATTTTAAAATATCATAAATCAGCTATGTTATTGTTTTGAAAAATATATTCCCTTTATCTATGAGCCTTTAAAATCAAAAATCCTTTTGATCAAACGAAAAAAGGTCTACGTTTTTGTATCTGGTCTTTTCATAGTTGAATGAACTCATTAGACACTCACGCACATTTTCTCAAGAGTGAAAAATCTCACGGGTTGTGATTTTTGGTGCCAAATTATTTTTTTGTAGTTCCGTGTAGCTAAACACAAAGTTATTATGATTTCATGTTTATTAAGGTCCGCCTACTTTTCTAAATTTTTATAAAGCTTCTGATATTTTGAATTCCAGGAAGCCATCATGTCCCGCCATTCTTCCCTCGAGCCCATCTACAGTACCCTTCAACGTTGCTTCATTGGAATTGGACTAATATCCAACTTGATTCTGATAAACCTTATCATTTTCCGATCTCCCAAAGATTTAGGACTCTATAAGTACCTAATGGCTTATATCATCTGTTTCGAACTATTCTACATTGTTTTGGAGTTTCTAACAGTTCCCGATTTGTTAACTCTGGACTATGCTTTCTTTATAATTGTTGATCCCGAGAAATCGTTGTTGCCAGAAAAATGGTCACAAGTGGCAGATTGTGAGTTTAGTTTTGGCTCAAAAGAGGGCAGTTCTTCGGAGTTCCGGTACGTATTTTGACATGATAGTGTGCAATGATCAATTTTCATACAGCGCGCGGCAATCGGCCTCAGCGTGGAAGAATTTTGGTTTTTTCAACCTAGGTTACTGTAGTTTGGGTTACTTCAGCTTCACTGTAGCTCTGTTAAAGCCATTCTACAGTATCCCTGGATCTTTTTTGAACATTTCGAGTTCTATTGAATAAATGTAGTTTGGGTTAGTGTATACCGTCACAAATCTAAATCTAGTTTTTTTCTGGTTTCCTGTGAAGTTCGGATTC</canonical>
            <polymorphic>AAAGTCATGGATGCATATTCAATTGAACAATGAACTTGTTGTTTTGGTATTTTTTTTTAATTTTAAAATATCATAAATCAGCTATGTTATTGTTTTGAAAAATATATTCCCTTTATCTATGAGCCTTTAAAATCAAAAATCCTTTTGATCAAACGAAAAAAGGTCTACGTTTTTGTATCTGGTCTTTTCATAGTTGAATGAACTCATTAGACACTCACGCACATTTTCTCAAGAGTGAAAAATCTCACGGGTTGTGATTTTTGGTGCCAAATTATTTTTTTGTAGTTCCGTGTAGCTAAACACAAAGTTATTATGATTTCATGTTTATTAAGGTCCGCCTACTTTTCTAAATTTTTATAAAGCTTCTGATATTTTGAATTCCAGGAAGCCATCATGTCCCGCCATTCTTCCCTCGAGCCCATCTACAGTACCCTTCAACGTTGCTTCATTGGAATTGGACTAATATCCAACTTGATTCTGATAAACCTTATCATTTTCCRATCTCCCAAAGATTTAGGACTCTATAAGTACCTAATGGCTTATATCATCTGTTTCGAACTATTCTACATTGTTTTGGAGTTTCTAACAGTTCCCGATTTGTTAACTCTGGACTATGCTTTCTTTATAATTGTTGATCCCGAGAAATCGTTGTTGCCAGAAAAATGGTCACAAGTGGCAGATTGTGAGTTTAGTTTTGGCTCAAAAGAGGGCAGTTCTTCGGAGTTCCGGTACGTATTTTGACATGATAGTGTGCAATGATCAATTTTCATACAGCGCGCGGCAATCGGCCTCAGCGTGGAAGAATTTTGGTTTTTTCAACCTAGGTTACTGTAGTTTGGGTTACTTCAGCTTCACTGTAGCTCTGTTAAAGCCATTCTACAGTATCCCTGGATCTTTTTTGAACATTTCGAGTTCTATTGAATAAATGTAGTTTGGGTTAGTGTATACCGTCACAAATCTAAATCTAGTTTTTTTCTGGTTTCCTGTGAAGTTCGGATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>353 146 134 133 124 110</canonical_bands>
                <polymorphic_bands>487 146 133 124 110</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>367 275 221 112 20 5</canonical_bands>
                <polymorphic_bands>367 275 241 112 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTCATTGGAATTGGACTA</pcr_primer_p1>
		<pcr_primer_p2>ACTAAACTCACAATCTGCCACT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCTTCATTGGAATTGGACTAATATCCAACTTGATTCTGATAAACCTTATCATTTTCCGATCTCCCAAAGATTTAGGACTCTATAAGTACCTAATGGCTTATATCATCTGTTTCGAACTATTCTACATTGTTTTGGAGTTTCTAACAGTTCCCGATTTGTTAACTCTGGACTATGCTTTCTTTATAATTGTTGATCCCGAGAAATCGTTGTTGCCAGAAAAATGGTCACAAGTGGCAGATTGTGAGTTTAGT</canonical_amplicon>
		<polymorphic_amplicon>GCTTCATTGGAATTGGACTAATATCCAACTTGATTCTGATAAACCTTATCATTTTCCRATCTCCCAAAGATTTAGGACTCTATAAGTACCTAATGGCTTATATCATCTGTTTCGAACTATTCTACATTGTTTTGGAGTTTCTAACAGTTCCCGATTTGTTAACTCTGGACTATGCTTTCTTTATAATTGTTGATCCCGAGAAATCGTTGTTGCCAGAAAAATGGTCACAAGTGGCAGATTGTGAGTTTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30857</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>6178</contig_pos>
        <strand>+</strand>
        <context>AATTTTGGTT[C/T]TTTCAACCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTCATACAGCGCGCGGCAATCGGCCTCAGCGTGGAAGAATTTTGGTT</left_flank>
        <right_flank>TTTCAACCTAGGTTACTGTAGTTTGGGTTACTTCAGCTTCACTGTAGCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATTTCATGTTTATTAAGGTCCGCCTACTTTTCTAAATTTTTATAAAGCTTCTGATATTTTGAATTCCAGGAAGCCATCATGTCCCGCCATTCTTCCCTCGAGCCCATCTACAGTACCCTTCAACGTTGCTTCATTGGAATTGGACTAATATCCAACTTGATTCTGATAAACCTTATCATTTTCCGATCTCCCAAAGATTTAGGACTCTATAAGTACCTAATGGCTTATATCATCTGTTTCGAACTATTCTACATTGTTTTGGAGTTTCTAACAGTTCCCGATTTGTTAACTCTGGACTATGCTTTCTTTATAATTGTTGATCCCGAGAAATCGTTGTTGCCAGAAAAATGGTCACAAGTGGCAGATTGTGAGTTTAGTTTTGGCTCAAAAGAGGGCAGTTCTTCGGAGTTCCGGTACGTATTTTGACATGATAGTGTGCAATGATCAATTTTCATACAGCGCGCGGCAATCGGCCTCAGCGTGGAAGAATTTTGGTTTTTTCAACCTAGGTTACTGTAGTTTGGGTTACTTCAGCTTCACTGTAGCTCTGTTAAAGCCATTCTACAGTATCCCTGGATCTTTTTTGAACATTTCGAGTTCTATTGAATAAATGTAGTTTGGGTTAGTGTATACCGTCACAAATCTAAATCTAGTTTTTTTCTGGTTTCCTGTGAAGTTCGGATTCTCCAAACCCACAGTAATCCGAACTTTAACAAGTTATCGCATCCCTGAATTCATATAGACTTGAGTAATTCCGTTTTTTTAAAGCTATAGGTACTGTACGATTTCTGTACTTTTTCAGCTTCCGAATTTAATGTCTTCATGAATTACTGTAGTTGTTTTTCCAAAACTTCCCCACTGCCAGGATAACTGTAGTTTCGGTTACTGTAGATCCTAACCTAGGAAAGCTTTTAGGCCACTGTAAGATTACTGTAACCTTTCAATTCCAAACCCACCGTATTCCGGAGTACTGTGTTCTAGTTATCTTTACTATTAAC</canonical>
            <polymorphic>TGATTTCATGTTTATTAAGGTCCGCCTACTTTTCTAAATTTTTATAAAGCTTCTGATATTTTGAATTCCAGGAAGCCATCATGTCCCGCCATTCTTCCCTCGAGCCCATCTACAGTACCCTTCAACGTTGCTTCATTGGAATTGGACTAATATCCAACTTGATTCTGATAAACCTTATCATTTTCCGATCTCCCAAAGATTTAGGACTCTATAAGTACCTAATGGCTTATATCATCTGTTTCGAACTATTCTACATTGTTTTGGAGTTTCTAACAGTTCCCGATTTGTTAACTCTGGACTATGCTTTCTTTATAATTGTTGATCCCGAGAAATCGTTGTTGCCAGAAAAATGGTCACAAGTGGCAGATTGTGAGTTTAGTTTTGGCTCAAAAGAGGGCAGTTCTTCGGAGTTCCGGTACGTATTTTGACATGATAGTGTGCAATGATCAATTTTCATACAGCGCGCGGCAATCGGCCTCAGCGTGGAAGAATTTTGGTTYTTTCAACCTAGGTTACTGTAGTTTGGGTTACTTCAGCTTCACTGTAGCTCTGTTAAAGCCATTCTACAGTATCCCTGGATCTTTTTTGAACATTTCGAGTTCTATTGAATAAATGTAGTTTGGGTTAGTGTATACCGTCACAAATCTAAATCTAGTTTTTTTCTGGTTTCCTGTGAAGTTCGGATTCTCCAAACCCACAGTAATCCGAACTTTAACAAGTTATCGCATCCCTGAATTCATATAGACTTGAGTAATTCCGTTTTTTTAAAGCTATAGGTACTGTACGATTTCTGTACTTTTTCAGCTTCCGAATTTAATGTCTTCATGAATTACTGTAGTTGTTTTTCCAAAACTTCCCCACTGCCAGGATAACTGTAGTTTCGGTTACTGTAGATCCTAACCTAGGAAAGCTTTTAGGCCACTGTAAGATTACTGTAACCTTTCAATTCCAAACCCACCGTATTCCGGAGTACTGTGTTCTAGTTATCTTTACTATTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGGCAGATTGTGAGTTTAGT</pcr_primer_p1>
		<pcr_primer_p2>ATAGAACTCGAAATGTTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGTGGCAGATTGTGAGTTTAGTTTTGGCTCAAAAGAGGGCAGTTCTTCGGAGTTCCGGTACGTATTTTGACATGATAGTGTGCAATGATCAATTTTCATACAGCGCGCGGCAATCGGCCTCAGCGTGGAAGAATTTTGGTTTTTTCAACCTAGGTTACTGTAGTTTGGGTTACTTCAGCTTCACTGTAGCTCTGTTAAAGCCATTCTACAGTATCCCTGGATCTTTTTTGAACATTTCGAGTTCTAT</canonical_amplicon>
		<polymorphic_amplicon>AGTGGCAGATTGTGAGTTTAGTTTTGGCTCAAAAGAGGGCAGTTCTTCGGAGTTCCGGTACGTATTTTGACATGATAGTGTGCAATGATCAATTTTCATACAGCGCGCGGCAATCGGCCTCAGCGTGGAAGAATTTTGGTTYTTTCAACCTAGGTTACTGTAGTTTGGGTTACTTCAGCTTCACTGTAGCTCTGTTAAAGCCATTCTACAGTATCCCTGGATCTTTTTTGAACATTTCGAGTTCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30858</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>14976</contig_pos>
        <strand></strand>
        <context>atgcagcgac[C/A]aaaaaatata</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TAAATATAGACATACGTGACCCTTTAAGAAAAAGTGATGAATGCAGCGAC</left_flank>
        <right_flank>AAAAAATATATAAAAAAAGGTCAAATCGCGCCGAAGGTGCACCAGCCAGT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCGAGGGATCACACAAAATCCGATCAAAAGTGGATGAAGGATTGGGTTTGAGTACGAGAGGAAATTACTTTTTATTGTACTTGCTGACCTTTTGAACAATCTGGAAAAAATTAGGTCACTCTAAATTTGATTTTTTCTGATCGTTTTATGACAAGCATCTTCCTTACCGTAAACACTCTAATAGAATGCCCCCGAAGCCATCAACATTTAATTTATTTCCTGTGAAAGTTATCAAAAAGTGGTAAACTAACAAAATGTTTATCATAATATCAGCAACGTTTTATCAGTTGACCACTTTATGATATCTCTCACAAAAAATTAGATAAATTGGCTCAAACTTAAAAGTTAGGATTTGACTTCTAATAGAGTGTTTACGGTATATATAAAACGCTTGAGGGGGTTGTTGGTCCCCGTGTCAGGGTGCCCACTTTTAAAAAACTTGAAAAATAAATATAGACATACGTGACCCTTTAAGAAAAAGTGATGAATGCAGCGACCAAAAAATATATAAAAAAAGGTCAAATCGCGCCGAAGGTGCACCAGCCAGTTAGAAGCGCCGAAGGCGAGCCAAGCAGGCTGGAAAAAATAATATTCGAAATCGGAAAACAGTGAAATCATCATGAAAAAAGATCATAAAGACATCTTTTCATATGATTTCATCATTCGCTTTTTTTTCTCAGCGTCTCTTTCTTTTCTGTCAACGCTGAGACCAAAAAACGAGTGATGTAATTCGACAAACTTCCTTTTTTTTTGAATTTTCAACTATTTTCAAAAATGTGTTCAATTTTGGGAATGCCTGAGCTAGTAATAGCAAATATTATAGGATTTTTGGACTTTCGAGCAGTGTGAGTTTTTCGAAACATTCTGAATTTGAAAAAAAAAGAAAGTTTTCAGATTCACTATTCGCCAAGTTTGTAGAGATTTTCGAAATTTTATAAATGAAATGGACAAATCAAAATTGCCGGATTCGAAATTTGAAAAGATTCATGTATTAGTGA</canonical>
            <polymorphic>AATCGAGGGATCACACAAAATCCGATCAAAAGTGGATGAAGGATTGGGTTTGAGTACGAGAGGAAATTACTTTTTATTGTACTTGCTGACCTTTTGAACAATCTGGAAAAAATTAGGTCACTCTAAATTTGATTTTTTCTGATCGTTTTATGACAAGCATCTTCCTTACCGTAAACACTCTAATAGAATGCCCCCGAAGCCATCAACATTTAATTTATTTCCTGTGAAAGTTATCAAAAAGTGGTAAACTAACAAAATGTTTATCATAATATCAGCAACGTTTTATCAGTTGACCACTTTATGATATCTCTCACAAAAAATTAGATAAATTGGCTCAAACTTAAAAGTTAGGATTTGACTTCTAATAGAGTGTTTACGGTATATATAAAACGCTTGAGGGGGTTGTTGGTCCCCGTGTCAGGGTGCCCACTTTTAAAAAACTTGAAAAATAAATATAGACATACGTGACCCTTTAAGAAAAAGTGATGAATGCAGCGACMAAAAAATATATAAAAAAAGGTCAAATCGCGCCGAAGGTGCACCAGCCAGTTAGAAGCGCCGAAGGCGAGCCAAGCAGGCTGGAAAAAATAATATTCGAAATCGGAAAACAGTGAAATCATCATGAAAAAAGATCATAAAGACATCTTTTCATATGATTTCATCATTCGCTTTTTTTTCTCAGCGTCTCTTTCTTTTCTGTCAACGCTGAGACCAAAAAACGAGTGATGTAATTCGACAAACTTCCTTTTTTTTTGAATTTTCAACTATTTTCAAAAATGTGTTCAATTTTGGGAATGCCTGAGCTAGTAATAGCAAATATTATAGGATTTTTGGACTTTCGAGCAGTGTGAGTTTTTCGAAACATTCTGAATTTGAAAAAAAAAGAAAGTTTTCAGATTCACTATTCGCCAAGTTTGTAGAGATTTTCGAAATTTTATAAATGAAATGGACAAATCAAAATTGCCGGATTCGAAATTTGAAAAGATTCATGTATTAGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTTTATGACAAGCATCTTC</pcr_primer_p1>
		<pcr_primer_p2>ATTTCACTGTTTTCCGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>474</pcr_amplicon_size>
		<canonical_amplicon>CGTTTTATGACAAGCATCTTCCTTACCGTAAACACTCTAATAGAATGCCCCCGAAGCCATCAACATTTAATTTATTTCCTGTGAAAGTTATCAAAAAGTGGTAAACTAACAAAATGTTTATCATAATATCAGCAACGTTTTATCAGTTGACCACTTTATGATATCTCTCACAAAAAATTAGATAAATTGGCTCAAACTTAAAAGTTAGGATTTGACTTCTAATAGAGTGTTTACGGTATATATAAAACGCTTGAGGGGGTTGTTGGTCCCCGTGTCAGGGTGCCCACTTTTAAAAAACTTGAAAAATAAATATAGACATACGTGACCCTTTAAGAAAAAGTGATGAATGCAGCGACCAAAAAATATATAAAAAAAGGTCAAATCGCGCCGAAGGTGCACCAGCCAGTTAGAAGCGCCGAAGGCGAGCCAAGCAGGCTGGAAAAAATAATATTCGAAATCGGAAAACAGTGAAAT</canonical_amplicon>
		<polymorphic_amplicon>CGTTTTATGACAAGCATCTTCCTTACCGTAAACACTCTAATAGAATGCCCCCGAAGCCATCAACATTTAATTTATTTCCTGTGAAAGTTATCAAAAAGTGGTAAACTAACAAAATGTTTATCATAATATCAGCAACGTTTTATCAGTTGACCACTTTATGATATCTCTCACAAAAAATTAGATAAATTGGCTCAAACTTAAAAGTTAGGATTTGACTTCTAATAGAGTGTTTACGGTATATATAAAACGCTTGAGGGGGTTGTTGGTCCCCGTGTCAGGGTGCCCACTTTTAAAAAACTTGAAAAATAAATATAGACATACGTGACCCTTTAAGAAAAAGTGATGAATGCAGCGACMAAAAAATATATAAAAAAAGGTCAAATCGCGCCGAAGGTGCACCAGCCAGTTAGAAGCGCCGAAGGCGAGCCAAGCAGGCTGGAAAAAATAATATTCGAAATCGGAAAACAGTGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30859</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>15352</contig_pos>
        <strand>-</strand>
        <context>TCTGAATTTG[G/T]AAAAAAAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATTTTTGGACTTTCGAGCAGTGTGAGTTTTTCGAAACATTCTGAATTTG</left_flank>
        <right_flank>AAAAAAAAGAAAGTTTTCAGATTCACTATTCGCCAAGTTTGTAGAGATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGTATATATAAAACGCTTGAGGGGGTTGTTGGTCCCCGTGTCAGGGTGCCCACTTTTAAAAAACTTGAAAAATAAATATAGACATACGTGACCCTTTAAGAAAAAGTGATGAATGCAGCGACCAAAAAATATATAAAAAAAGGTCAAATCGCGCCGAAGGTGCACCAGCCAGTTAGAAGCGCCGAAGGCGAGCCAAGCAGGCTGGAAAAAATAATATTCGAAATCGGAAAACAGTGAAATCATCATGAAAAAAGATCATAAAGACATCTTTTCATATGATTTCATCATTCGCTTTTTTTTCTCAGCGTCTCTTTCTTTTCTGTCAACGCTGAGACCAAAAAACGAGTGATGTAATTCGACAAACTTCCTTTTTTTTTGAATTTTCAACTATTTTCAAAAATGTGTTCAATTTTGGGAATGCCTGAGCTAGTAATAGCAAATATTATAGGATTTTTGGACTTTCGAGCAGTGTGAGTTTTTCGAAACATTCTGAATTTGAAAAAAAAAGAAAGTTTTCAGATTCACTATTCGCCAAGTTTGTAGAGATTTTCGAAATTTTATAAATGAAATGGACAAATCAAAATTGCCGGATTCGAAATTTGAAAAGATTCATGTATTAGTGAAAAATGAAGAAATGATTCGAATGACTTTTATCTGGAATCATGTATCTCAAATAAAAATTGAGGAGTCTTTTGAAAAGGAGAAACCTGGATTTTTCAACTTGGTGAGATTTTTCAAAAATCGAATTTTTAAAATTACCTTTTTTCAGATTTCTCAAAGAATGTTTTTGAAATATTTTGGGAACAATAATAAGCACTCTAATCAAAAAGATCTTGAAATGGATGAAGTTCTTGAAGTTTATCAATTTGTTTTAAAATTTCAGAAATCTATTCTTCAAGTTTTAACATTCGAATTTGACATTTCACAAAATTCGAACATTATCTTCTCAACTTTGATCACTATTTTCAAACCTCTAAACCAAAAATTTCAAACGGAAAT</canonical>
            <polymorphic>CGGTATATATAAAACGCTTGAGGGGGTTGTTGGTCCCCGTGTCAGGGTGCCCACTTTTAAAAAACTTGAAAAATAAATATAGACATACGTGACCCTTTAAGAAAAAGTGATGAATGCAGCGACCAAAAAATATATAAAAAAAGGTCAAATCGCGCCGAAGGTGCACCAGCCAGTTAGAAGCGCCGAAGGCGAGCCAAGCAGGCTGGAAAAAATAATATTCGAAATCGGAAAACAGTGAAATCATCATGAAAAAAGATCATAAAGACATCTTTTCATATGATTTCATCATTCGCTTTTTTTTCTCAGCGTCTCTTTCTTTTCTGTCAACGCTGAGACCAAAAAACGAGTGATGTAATTCGACAAACTTCCTTTTTTTTTGAATTTTCAACTATTTTCAAAAATGTGTTCAATTTTGGGAATGCCTGAGCTAGTAATAGCAAATATTATAGGATTTTTGGACTTTCGAGCAGTGTGAGTTTTTCGAAACATTCTGAATTTGKAAAAAAAAGAAAGTTTTCAGATTCACTATTCGCCAAGTTTGTAGAGATTTTCGAAATTTTATAAATGAAATGGACAAATCAAAATTGCCGGATTCGAAATTTGAAAAGATTCATGTATTAGTGAAAAATGAAGAAATGATTCGAATGACTTTTATCTGGAATCATGTATCTCAAATAAAAATTGAGGAGTCTTTTGAAAAGGAGAAACCTGGATTTTTCAACTTGGTGAGATTTTTCAAAAATCGAATTTTTAAAATTACCTTTTTTCAGATTTCTCAAAGAATGTTTTTGAAATATTTTGGGAACAATAATAAGCACTCTAATCAAAAAGATCTTGAAATGGATGAAGTTCTTGAAGTTTATCAATTTGTTTTAAAATTTCAGAAATCTATTCTTCAAGTTTTAACATTCGAATTTGACATTTCACAAAATTCGAACATTATCTTCTCAACTTTGATCACTATTTTCAAACCTCTAAACCAAAAATTTCAAACGGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAATTCGACAAACTTCCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGATTTGTCCATTTCATTTAT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>GTAATTCGACAAACTTCCTTTTTTTTTGAATTTTCAACTATTTTCAAAAATGTGTTCAATTTTGGGAATGCCTGAGCTAGTAATAGCAAATATTATAGGATTTTTGGACTTTCGAGCAGTGTGAGTTTTTCGAAACATTCTGAATTTGAAAAAAAAAGAAAGTTTTCAGATTCACTATTCGCCAAGTTTGTAGAGATTTTCGAAATTTTATAAATGAAATGGACAAATCAAA</canonical_amplicon>
		<polymorphic_amplicon>GTAATTCGACAAACTTCCTTTTTTTTTGAATTTTCAACTATTTTCAAAAATGTGTTCAATTTTGGGAATGCCTGAGCTAGTAATAGCAAATATTATAGGATTTTTGGACTTTCGAGCAGTGTGAGTTTTTCGAAACATTCTGAATTTGKAAAAAAAAGAAAGTTTTCAGATTCACTATTCGCCAAGTTTGTAGAGATTTTCGAAATTTTATAAATGAAATGGACAAATCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30860</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>15380</contig_pos>
        <strand></strand>
        <context>CAGATTCACT[A/C]TTCGCCAAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTCGAAACATTCTGAATTTGAAAAAAAAAGAAAGTTTTCAGATTCACT</left_flank>
        <right_flank>TTCGCCAAGTTTGTAGAGATTTTCGAAATTTTATAAATGAAATGGACAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGGTCCCCGTGTCAGGGTGCCCACTTTTAAAAAACTTGAAAAATAAATATAGACATACGTGACCCTTTAAGAAAAAGTGATGAATGCAGCGACCAAAAAATATATAAAAAAAGGTCAAATCGCGCCGAAGGTGCACCAGCCAGTTAGAAGCGCCGAAGGCGAGCCAAGCAGGCTGGAAAAAATAATATTCGAAATCGGAAAACAGTGAAATCATCATGAAAAAAGATCATAAAGACATCTTTTCATATGATTTCATCATTCGCTTTTTTTTCTCAGCGTCTCTTTCTTTTCTGTCAACGCTGAGACCAAAAAACGAGTGATGTAATTCGACAAACTTCCTTTTTTTTTGAATTTTCAACTATTTTCAAAAATGTGTTCAATTTTGGGAATGCCTGAGCTAGTAATAGCAAATATTATAGGATTTTTGGACTTTCGAGCAGTGTGAGTTTTTCGAAACATTCTGAATTTGAAAAAAAAAGAAAGTTTTCAGATTCACTATTCGCCAAGTTTGTAGAGATTTTCGAAATTTTATAAATGAAATGGACAAATCAAAATTGCCGGATTCGAAATTTGAAAAGATTCATGTATTAGTGAAAAATGAAGAAATGATTCGAATGACTTTTATCTGGAATCATGTATCTCAAATAAAAATTGAGGAGTCTTTTGAAAAGGAGAAACCTGGATTTTTCAACTTGGTGAGATTTTTCAAAAATCGAATTTTTAAAATTACCTTTTTTCAGATTTCTCAAAGAATGTTTTTGAAATATTTTGGGAACAATAATAAGCACTCTAATCAAAAAGATCTTGAAATGGATGAAGTTCTTGAAGTTTATCAATTTGTTTTAAAATTTCAGAAATCTATTCTTCAAGTTTTAACATTCGAATTTGACATTTCACAAAATTCGAACATTATCTTCTCAACTTTGATCACTATTTTCAAACCTCTAAACCAAAAATTTCAAACGGAAATATTGAGAATTTCGGGAACTCAAGAACCT</canonical>
            <polymorphic>GTTGGTCCCCGTGTCAGGGTGCCCACTTTTAAAAAACTTGAAAAATAAATATAGACATACGTGACCCTTTAAGAAAAAGTGATGAATGCAGCGACCAAAAAATATATAAAAAAAGGTCAAATCGCGCCGAAGGTGCACCAGCCAGTTAGAAGCGCCGAAGGCGAGCCAAGCAGGCTGGAAAAAATAATATTCGAAATCGGAAAACAGTGAAATCATCATGAAAAAAGATCATAAAGACATCTTTTCATATGATTTCATCATTCGCTTTTTTTTCTCAGCGTCTCTTTCTTTTCTGTCAACGCTGAGACCAAAAAACGAGTGATGTAATTCGACAAACTTCCTTTTTTTTTGAATTTTCAACTATTTTCAAAAATGTGTTCAATTTTGGGAATGCCTGAGCTAGTAATAGCAAATATTATAGGATTTTTGGACTTTCGAGCAGTGTGAGTTTTTCGAAACATTCTGAATTTGAAAAAAAAAGAAAGTTTTCAGATTCACTMTTCGCCAAGTTTGTAGAGATTTTCGAAATTTTATAAATGAAATGGACAAATCAAAATTGCCGGATTCGAAATTTGAAAAGATTCATGTATTAGTGAAAAATGAAGAAATGATTCGAATGACTTTTATCTGGAATCATGTATCTCAAATAAAAATTGAGGAGTCTTTTGAAAAGGAGAAACCTGGATTTTTCAACTTGGTGAGATTTTTCAAAAATCGAATTTTTAAAATTACCTTTTTTCAGATTTCTCAAAGAATGTTTTTGAAATATTTTGGGAACAATAATAAGCACTCTAATCAAAAAGATCTTGAAATGGATGAAGTTCTTGAAGTTTATCAATTTGTTTTAAAATTTCAGAAATCTATTCTTCAAGTTTTAACATTCGAATTTGACATTTCACAAAATTCGAACATTATCTTCTCAACTTTGATCACTATTTTCAAACCTCTAAACCAAAAATTTCAAACGGAAATATTGAGAATTTCGGGAACTCAAGAACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAATTCGACAAACTTCCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGATTTGTCCATTTCATTTAT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>GTAATTCGACAAACTTCCTTTTTTTTTGAATTTTCAACTATTTTCAAAAATGTGTTCAATTTTGGGAATGCCTGAGCTAGTAATAGCAAATATTATAGGATTTTTGGACTTTCGAGCAGTGTGAGTTTTTCGAAACATTCTGAATTTGAAAAAAAAAGAAAGTTTTCAGATTCACTATTCGCCAAGTTTGTAGAGATTTTCGAAATTTTATAAATGAAATGGACAAATCAAA</canonical_amplicon>
		<polymorphic_amplicon>GTAATTCGACAAACTTCCTTTTTTTTTGAATTTTCAACTATTTTCAAAAATGTGTTCAATTTTGGGAATGCCTGAGCTAGTAATAGCAAATATTATAGGATTTTTGGACTTTCGAGCAGTGTGAGTTTTTCGAAACATTCTGAATTTGAAAAAAAAAGAAAGTTTTCAGATTCACTMTTCGCCAAGTTTGTAGAGATTTTCGAAATTTTATAAATGAAATGGACAAATCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30861</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>15529</contig_pos>
        <strand>-</strand>
        <context>TATCTCAAAT[G/T/A/C]AAAATTGAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T/A/C</alleles>
        <left_flank>AATGAAGAAATGATTCGAATGACTTTTATCTGGAATCATGTATCTCAAAT</left_flank>
        <right_flank>AAAATTGAGGAGTCTTTTGAAAAGGAGAAACCTGGATTTTTCAACTTGGT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCGCCGAAGGCGAGCCAAGCAGGCTGGAAAAAATAATATTCGAAATCGGAAAACAGTGAAATCATCATGAAAAAAGATCATAAAGACATCTTTTCATATGATTTCATCATTCGCTTTTTTTTCTCAGCGTCTCTTTCTTTTCTGTCAACGCTGAGACCAAAAAACGAGTGATGTAATTCGACAAACTTCCTTTTTTTTTGAATTTTCAACTATTTTCAAAAATGTGTTCAATTTTGGGAATGCCTGAGCTAGTAATAGCAAATATTATAGGATTTTTGGACTTTCGAGCAGTGTGAGTTTTTCGAAACATTCTGAATTTGAAAAAAAAAGAAAGTTTTCAGATTCACTATTCGCCAAGTTTGTAGAGATTTTCGAAATTTTATAAATGAAATGGACAAATCAAAATTGCCGGATTCGAAATTTGAAAAGATTCATGTATTAGTGAAAAATGAAGAAATGATTCGAATGACTTTTATCTGGAATCATGTATCTCAAATAAAAATTGAGGAGTCTTTTGAAAAGGAGAAACCTGGATTTTTCAACTTGGTGAGATTTTTCAAAAATCGAATTTTTAAAATTACCTTTTTTCAGATTTCTCAAAGAATGTTTTTGAAATATTTTGGGAACAATAATAAGCACTCTAATCAAAAAGATCTTGAAATGGATGAAGTTCTTGAAGTTTATCAATTTGTTTTAAAATTTCAGAAATCTATTCTTCAAGTTTTAACATTCGAATTTGACATTTCACAAAATTCGAACATTATCTTCTCAACTTTGATCACTATTTTCAAACCTCTAAACCAAAAATTTCAAACGGAAATATTGAGAATTTCGGGAACTCAAGAACCTCACTTTTTGTCAATTTTGCCATTGATTGACTCAAAAGTTCTTGAAGAAATCCGTATTTATCCTGTTGGTCAAACACTTCAAATATATTCTGGAATGGACCAAATTTTTGAAACTGAGCAATGGAAAAATTCAAAAAGAATGTCTTTTGG</canonical>
            <polymorphic>AAGCGCCGAAGGCGAGCCAAGCAGGCTGGAAAAAATAATATTCGAAATCGGAAAACAGTGAAATCATCATGAAAAAAGATCATAAAGACATCTTTTCATATGATTTCATCATTCGCTTTTTTTTCTCAGCGTCTCTTTCTTTTCTGTCAACGCTGAGACCAAAAAACGAGTGATGTAATTCGACAAACTTCCTTTTTTTTTGAATTTTCAACTATTTTCAAAAATGTGTTCAATTTTGGGAATGCCTGAGCTAGTAATAGCAAATATTATAGGATTTTTGGACTTTCGAGCAGTGTGAGTTTTTCGAAACATTCTGAATTTGAAAAAAAAAGAAAGTTTTCAGATTCACTATTCGCCAAGTTTGTAGAGATTTTCGAAATTTTATAAATGAAATGGACAAATCAAAATTGCCGGATTCGAAATTTGAAAAGATTCATGTATTAGTGAAAAATGAAGAAATGATTCGAATGACTTTTATCTGGAATCATGTATCTCAAATKAAAATTGAGGAGTCTTTTGAAAAGGAGAAACCTGGATTTTTCAACTTGGTGAGATTTTTCAAAAATCGAATTTTTAAAATTACCTTTTTTCAGATTTCTCAAAGAATGTTTTTGAAATATTTTGGGAACAATAATAAGCACTCTAATCAAAAAGATCTTGAAATGGATGAAGTTCTTGAAGTTTATCAATTTGTTTTAAAATTTCAGAAATCTATTCTTCAAGTTTTAACATTCGAATTTGACATTTCACAAAATTCGAACATTATCTTCTCAACTTTGATCACTATTTTCAAACCTCTAAACCAAAAATTTCAAACGGAAATATTGAGAATTTCGGGAACTCAAGAACCTCACTTTTTGTCAATTTTGCCATTGATTGACTCAAAAGTTCTTGAAGAAATCCGTATTTATCCTGTTGGTCAAACACTTCAAATATATTCTGGAATGGACCAAATTTTTGAAACTGAGCAATGGAAAAATTCAAAAAGAATGTCTTTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAATGAAATGGACAAATCAAA</pcr_primer_p1>
		<pcr_primer_p2>TTATTGTTCCCAAAATATTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATAAATGAAATGGACAAATCAAAATTGCCGGATTCGAAATTTGAAAAGATTCATGTATTAGTGAAAAATGAAGAAATGATTCGAATGACTTTTATCTGGAATCATGTATCTCAAATAAAAATTGAGGAGTCTTTTGAAAAGGAGAAACCTGGATTTTTCAACTTGGTGAGATTTTTCAAAAATCGAATTTTTAAAATTACCTTTTTTCAGATTTCTCAAAGAATGTTTTTGAAATATTTTGGGAACAATAA</canonical_amplicon>
		<polymorphic_amplicon>ATAAATGAAATGGACAAATCAAAATTGCCGGATTCGAAATTTGAAAAGATTCATGTATTAGTGAAAAATGAAGAAATGATTCGAATGACTTTTATCTGGAATCATGTATCTCAAATKAAAATTGAGGAGTCTTTTGAAAAGGAGAAACCTGGATTTTTCAACTTGGTGAGATTTTTCAAAAATCGAATTTTTAAAATTACCTTTTTTCAGATTTCTCAAAGAATGTTTTTGAAATATTTTGGGAACAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30862</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>25880</contig_pos>
        <strand></strand>
        <context>ATTCCCAAAA[C/A]CGAAACGGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CTCCTTCGTTTTGATTTTAAAATTTTAAAACTTTCAATATATTCCCAAAA</left_flank>
        <right_flank>CGAAACGGTCCCCAACGGATTAAAAACTTGAAATTTCAGAACAATTTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTATTTTCAGCCACTCGGTGTGTTCTTCGAGACTGGATGTGACTACCATTTGGCCATCTGCATCTTGCTCACAATTCTCGGATATATTCCAGGAATCATCTACGCGTGCTACGTCATCGTCGATCAATAAATCAATAATCATAAGCTTCATAATTTGCTCCGAAATAATTCTTCAAAATTCTTCCTTTCCCTGCCCCTGATCTTTTTTCATCACCTTGTGATTCTTTTTTGAGCATTTTTTGTCACCTTTTTCCAAACAAAATTTCCAGTTTTGAATGAAATTGTGTTTTGTATGAATAAGAAGATTATGAGAAGAAGTTGAACGGATGATAAGCATGATAAAGGATGATAAGTTTTAAGAGAGGGCAAGGATCAATTTCTAGAAAGAATTCTCGAAGTTTTGATCTTGAAAATTGTGGCGGGAATTCGAATTTGAATTAAAAAAAACTCCTTCGTTTTGATTTTAAAATTTTAAAACTTTCAATATATTCCCAAAACCGAAACGGTCCCCAACGGATTAAAAACTTGAAATTTCAGAACAATTTTTTTCAAATGCAAATTTTATTGAAATAAAGCCAAGTTATGTACATACATCGATTTTTTTTGATTTTTCAAACAATTTTTTGAATTTGATTGCTGACAAAAAATGAAACCGTTACAAGTAATCAGTGAATTCGGGCGAGGGATTTTTTCTTGAGAAGAATGCATCGTGAGATAAAGAATGGCAAAATTGATTACAGGATTACTGTAGGCTTCTAATTGTCAACGATGACGTAGACGGCGTAGATGATTCCTGGAATGTAGCCGAGAATTGTGAGCAAGATGCAAATGGCAAGATGAACGTCACATCCTGTCTCCAAGAACACTCCGAGAGGCTGAAATTATATAAAATTTATAAAATTCCAATTGTTTTGGATTTTTCAGATCCCCAGTTTTCAAGATTCCCATGTTCCTTGACTGTCAAATTTTCAGAAACCCAATATCCCAGAAATCCAGTT</canonical>
            <polymorphic>CTCTATTTTCAGCCACTCGGTGTGTTCTTCGAGACTGGATGTGACTACCATTTGGCCATCTGCATCTTGCTCACAATTCTCGGATATATTCCAGGAATCATCTACGCGTGCTACGTCATCGTCGATCAATAAATCAATAATCATAAGCTTCATAATTTGCTCCGAAATAATTCTTCAAAATTCTTCCTTTCCCTGCCCCTGATCTTTTTTCATCACCTTGTGATTCTTTTTTGAGCATTTTTTGTCACCTTTTTCCAAACAAAATTTCCAGTTTTGAATGAAATTGTGTTTTGTATGAATAAGAAGATTATGAGAAGAAGTTGAACGGATGATAAGCATGATAAAGGATGATAAGTTTTAAGAGAGGGCAAGGATCAATTTCTAGAAAGAATTCTCGAAGTTTTGATCTTGAAAATTGTGGCGGGAATTCGAATTTGAATTAAAAAAAACTCCTTCGTTTTGATTTTAAAATTTTAAAACTTTCAATATATTCCCAAAAMCGAAACGGTCCCCAACGGATTAAAAACTTGAAATTTCAGAACAATTTTTTTCAAATGCAAATTTTATTGAAATAAAGCCAAGTTATGTACATACATCGATTTTTTTTGATTTTTCAAACAATTTTTTGAATTTGATTGCTGACAAAAAATGAAACCGTTACAAGTAATCAGTGAATTCGGGCGAGGGATTTTTTCTTGAGAAGAATGCATCGTGAGATAAAGAATGGCAAAATTGATTACAGGATTACTGTAGGCTTCTAATTGTCAACGATGACGTAGACGGCGTAGATGATTCCTGGAATGTAGCCGAGAATTGTGAGCAAGATGCAAATGGCAAGATGAACGTCACATCCTGTCTCCAAGAACACTCCGAGAGGCTGAAATTATATAAAATTTATAAAATTCCAATTGTTTTGGATTTTTCAGATCCCCAGTTTTCAAGATTCCCATGTTCCTTGACTGTCAAATTTTCAGAAACCCAATATCCCAGAAATCCAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTTTGATCTTGAAAATTGTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGTCAGCAATCAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAGTTTTGATCTTGAAAATTGTGGCGGGAATTCGAATTTGAATTAAAAAAAACTCCTTCGTTTTGATTTTAAAATTTTAAAACTTTCAATATATTCCCAAAACCGAAACGGTCCCCAACGGATTAAAAACTTGAAATTTCAGAACAATTTTTTTCAAATGCAAATTTTATTGAAATAAAGCCAAGTTATGTACATACATCGATTTTTTTTGATTTTTCAAACAATTTTTTGAATTTGATTGCTGACAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAGTTTTGATCTTGAAAATTGTGGCGGGAATTCGAATTTGAATTAAAAAAAACTCCTTCGTTTTGATTTTAAAATTTTAAAACTTTCAATATATTCCCAAAAMCGAAACGGTCCCCAACGGATTAAAAACTTGAAATTTCAGAACAATTTTTTTCAAATGCAAATTTTATTGAAATAAAGCCAAGTTATGTACATACATCGATTTTTTTTGATTTTTCAAACAATTTTTTGAATTTGATTGCTGACAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30863</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>25893</contig_pos>
        <strand></strand>
        <context>AAACGGTCCC[C/T]AACGGATTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTAAAATTTTAAAACTTTCAATATATTCCCAAAACCGAAACGGTCCC</left_flank>
        <right_flank>AACGGATTAAAAACTTGAAATTTCAGAACAATTTTTTTCAAATGCAAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTCGGTGTGTTCTTCGAGACTGGATGTGACTACCATTTGGCCATCTGCATCTTGCTCACAATTCTCGGATATATTCCAGGAATCATCTACGCGTGCTACGTCATCGTCGATCAATAAATCAATAATCATAAGCTTCATAATTTGCTCCGAAATAATTCTTCAAAATTCTTCCTTTCCCTGCCCCTGATCTTTTTTCATCACCTTGTGATTCTTTTTTGAGCATTTTTTGTCACCTTTTTCCAAACAAAATTTCCAGTTTTGAATGAAATTGTGTTTTGTATGAATAAGAAGATTATGAGAAGAAGTTGAACGGATGATAAGCATGATAAAGGATGATAAGTTTTAAGAGAGGGCAAGGATCAATTTCTAGAAAGAATTCTCGAAGTTTTGATCTTGAAAATTGTGGCGGGAATTCGAATTTGAATTAAAAAAAACTCCTTCGTTTTGATTTTAAAATTTTAAAACTTTCAATATATTCCCAAAACCGAAACGGTCCCCAACGGATTAAAAACTTGAAATTTCAGAACAATTTTTTTCAAATGCAAATTTTATTGAAATAAAGCCAAGTTATGTACATACATCGATTTTTTTTGATTTTTCAAACAATTTTTTGAATTTGATTGCTGACAAAAAATGAAACCGTTACAAGTAATCAGTGAATTCGGGCGAGGGATTTTTTCTTGAGAAGAATGCATCGTGAGATAAAGAATGGCAAAATTGATTACAGGATTACTGTAGGCTTCTAATTGTCAACGATGACGTAGACGGCGTAGATGATTCCTGGAATGTAGCCGAGAATTGTGAGCAAGATGCAAATGGCAAGATGAACGTCACATCCTGTCTCCAAGAACACTCCGAGAGGCTGAAATTATATAAAATTTATAAAATTCCAATTGTTTTGGATTTTTCAGATCCCCAGTTTTCAAGATTCCCATGTTCCTTGACTGTCAAATTTTCAGAAACCCAATATCCCAGAAATCCAGTTTTTTGAACTTTTT</canonical>
            <polymorphic>CACTCGGTGTGTTCTTCGAGACTGGATGTGACTACCATTTGGCCATCTGCATCTTGCTCACAATTCTCGGATATATTCCAGGAATCATCTACGCGTGCTACGTCATCGTCGATCAATAAATCAATAATCATAAGCTTCATAATTTGCTCCGAAATAATTCTTCAAAATTCTTCCTTTCCCTGCCCCTGATCTTTTTTCATCACCTTGTGATTCTTTTTTGAGCATTTTTTGTCACCTTTTTCCAAACAAAATTTCCAGTTTTGAATGAAATTGTGTTTTGTATGAATAAGAAGATTATGAGAAGAAGTTGAACGGATGATAAGCATGATAAAGGATGATAAGTTTTAAGAGAGGGCAAGGATCAATTTCTAGAAAGAATTCTCGAAGTTTTGATCTTGAAAATTGTGGCGGGAATTCGAATTTGAATTAAAAAAAACTCCTTCGTTTTGATTTTAAAATTTTAAAACTTTCAATATATTCCCAAAACCGAAACGGTCCCYAACGGATTAAAAACTTGAAATTTCAGAACAATTTTTTTCAAATGCAAATTTTATTGAAATAAAGCCAAGTTATGTACATACATCGATTTTTTTTGATTTTTCAAACAATTTTTTGAATTTGATTGCTGACAAAAAATGAAACCGTTACAAGTAATCAGTGAATTCGGGCGAGGGATTTTTTCTTGAGAAGAATGCATCGTGAGATAAAGAATGGCAAAATTGATTACAGGATTACTGTAGGCTTCTAATTGTCAACGATGACGTAGACGGCGTAGATGATTCCTGGAATGTAGCCGAGAATTGTGAGCAAGATGCAAATGGCAAGATGAACGTCACATCCTGTCTCCAAGAACACTCCGAGAGGCTGAAATTATATAAAATTTATAAAATTCCAATTGTTTTGGATTTTTCAGATCCCCAGTTTTCAAGATTCCCATGTTCCTTGACTGTCAAATTTTCAGAAACCCAATATCCCAGAAATCCAGTTTTTTGAACTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTTTGATCTTGAAAATTGTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGTCAGCAATCAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAGTTTTGATCTTGAAAATTGTGGCGGGAATTCGAATTTGAATTAAAAAAAACTCCTTCGTTTTGATTTTAAAATTTTAAAACTTTCAATATATTCCCAAAACCGAAACGGTCCCCAACGGATTAAAAACTTGAAATTTCAGAACAATTTTTTTCAAATGCAAATTTTATTGAAATAAAGCCAAGTTATGTACATACATCGATTTTTTTTGATTTTTCAAACAATTTTTTGAATTTGATTGCTGACAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAGTTTTGATCTTGAAAATTGTGGCGGGAATTCGAATTTGAATTAAAAAAAACTCCTTCGTTTTGATTTTAAAATTTTAAAACTTTCAATATATTCCCAAAACCGAAACGGTCCCYAACGGATTAAAAACTTGAAATTTCAGAACAATTTTTTTCAAATGCAAATTTTATTGAAATAAAGCCAAGTTATGTACATACATCGATTTTTTTTGATTTTTCAAACAATTTTTTGAATTTGATTGCTGACAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30864</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>26265</contig_pos>
        <strand></strand>
        <context>AGGCTGaaat[T/C]atataaaatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAAGATGAACGTCACATCCTGTCTCCAAGAACACTCCGAGAGGCTGAAAT</left_flank>
        <right_flank>ATATAAAATTTATAAAATTCCAATTGTTTTGGATTTTTCAGATCCCCAGT</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGAATTCTCGAAGTTTTGATCTTGAAAATTGTGGCGGGAATTCGAATTTGAATTAAAAAAAACTCCTTCGTTTTGATTTTAAAATTTTAAAACTTTCAATATATTCCCAAAACCGAAACGGTCCCCAACGGATTAAAAACTTGAAATTTCAGAACAATTTTTTTCAAATGCAAATTTTATTGAAATAAAGCCAAGTTATGTACATACATCGATTTTTTTTGATTTTTCAAACAATTTTTTGAATTTGATTGCTGACAAAAAATGAAACCGTTACAAGTAATCAGTGAATTCGGGCGAGGGATTTTTTCTTGAGAAGAATGCATCGTGAGATAAAGAATGGCAAAATTGATTACAGGATTACTGTAGGCTTCTAATTGTCAACGATGACGTAGACGGCGTAGATGATTCCTGGAATGTAGCCGAGAATTGTGAGCAAGATGCAAATGGCAAGATGAACGTCACATCCTGTCTCCAAGAACACTCCGAGAGGCTGAAATTATATAAAATTTATAAAATTCCAATTGTTTTGGATTTTTCAGATCCCCAGTTTTCAAGATTCCCATGTTCCTTGACTGTCAAATTTTCAGAAACCCAATATCCCAGAAATCCAGTTTTTTGAACTTTTTGAGTTTAAGACGCTTTCGGGAATCGGGAAAAAAATTTATTTTGAAATTTGAAATTTTAAGACTTCAAGGTATTGAGATTTCAAGATTTCAAGATTTCGAAATTTCATTCAAAATTTCCAGATTTCAAAATTTCCGAATTGCCAGAATCAAAGATTCTAAGATTCTAAGATTTTGAGGTTTCCAGATTCTATGATTTTAAGATTCAAGATTCTAAGATTCCTAAAATCCTAAATTCCAGGATTCCGTGCCTCAAGGATTCTAGGATTCTAAAGTTCAAAAATTCAAAAATTTTGAAGTTCTTAAATTCCAAGATTCCACGATTTTCAGATTTTCAGACTCCCAGATTCTCAGATCCTCGAATTCCAACATTTT</canonical>
            <polymorphic>AAAGAATTCTCGAAGTTTTGATCTTGAAAATTGTGGCGGGAATTCGAATTTGAATTAAAAAAAACTCCTTCGTTTTGATTTTAAAATTTTAAAACTTTCAATATATTCCCAAAACCGAAACGGTCCCCAACGGATTAAAAACTTGAAATTTCAGAACAATTTTTTTCAAATGCAAATTTTATTGAAATAAAGCCAAGTTATGTACATACATCGATTTTTTTTGATTTTTCAAACAATTTTTTGAATTTGATTGCTGACAAAAAATGAAACCGTTACAAGTAATCAGTGAATTCGGGCGAGGGATTTTTTCTTGAGAAGAATGCATCGTGAGATAAAGAATGGCAAAATTGATTACAGGATTACTGTAGGCTTCTAATTGTCAACGATGACGTAGACGGCGTAGATGATTCCTGGAATGTAGCCGAGAATTGTGAGCAAGATGCAAATGGCAAGATGAACGTCACATCCTGTCTCCAAGAACACTCCGAGAGGCTGAAATYATATAAAATTTATAAAATTCCAATTGTTTTGGATTTTTCAGATCCCCAGTTTTCAAGATTCCCATGTTCCTTGACTGTCAAATTTTCAGAAACCCAATATCCCAGAAATCCAGTTTTTTGAACTTTTTGAGTTTAAGACGCTTTCGGGAATCGGGAAAAAAATTTATTTTGAAATTTGAAATTTTAAGACTTCAAGGTATTGAGATTTCAAGATTTCAAGATTTCGAAATTTCATTCAAAATTTCCAGATTTCAAAATTTCCGAATTGCCAGAATCAAAGATTCTAAGATTCTAAGATTTTGAGGTTTCCAGATTCTATGATTTTAAGATTCAAGATTCTAAGATTCCTAAAATCCTAAATTCCAGGATTCCGTGCCTCAAGGATTCTAGGATTCTAAAGTTCAAAAATTCAAAAATTTTGAAGTTCTTAAATTCCAAGATTCCACGATTTTCAGATTTTCAGACTCCCAGATTCTCAGATCCTCGAATTCCAACATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>95 80 70 62 60 59 57 56 52 48 48 45 32 29 24 17 16 16 14 12 12 12 11 10 9 9 8 8 7 6 6 6 4</canonical_bands>
                <polymorphic_bands>95 80 80 62 60 59 57 56 52 48 48 45 32 29 24 17 16 16 14 12 12 12 11 9 9 8 8 7 6 6 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGCATCGTGAGATAAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>AACATGGGAATCTTGAAAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATGCATCGTGAGATAAAGAATGGCAAAATTGATTACAGGATTACTGTAGGCTTCTAATTGTCAACGATGACGTAGACGGCGTAGATGATTCCTGGAATGTAGCCGAGAATTGTGAGCAAGATGCAAATGGCAAGATGAACGTCACATCCTGTCTCCAAGAACACTCCGAGAGGCTGAAATTATATAAAATTTATAAAATTCCAATTGTTTTGGATTTTTCAGATCCCCAGTTTTCAAGATTCCCATGTT</canonical_amplicon>
		<polymorphic_amplicon>AATGCATCGTGAGATAAAGAATGGCAAAATTGATTACAGGATTACTGTAGGCTTCTAATTGTCAACGATGACGTAGACGGCGTAGATGATTCCTGGAATGTAGCCGAGAATTGTGAGCAAGATGCAAATGGCAAGATGAACGTCACATCCTGTCTCCAAGAACACTCCGAGAGGCTGAAATYATATAAAATTTATAAAATTCCAATTGTTTTGGATTTTTCAGATCCCCAGTTTTCAAGATTCCCATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30865</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>72627</contig_pos>
        <strand>+</strand>
        <context>TCTGGAAATG[C/T]TTTTTTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGAGATTCGAAATAGCGACGGAAGAATGCGGCACAGGCTCTGGAAATG</left_flank>
        <right_flank>TTTTTTTTCAGATTTTCAGAATTTCGGAATCTCAAATTATTAGAAAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGCACCATATTCCATACAAGATTCATATCATCCTGTGTCATACAAGTAATGTCATAAATATTCTTCCATTCTTTCTCTCCTTGTTTCGTTCTCGTATCTCTCATTTCTTTGAAATCCTGCCAACTTCGAAATGCGAAATCTAATTTAGCAGTTGCTCGAGATATTATTCCGCCCTGAAAACAATTTTTTGGATACCGGGAGGCCAAAATTTAAATTTTTGATTATTAAACTTACATTCAAGGAACTGGACGAACTTGGCACATTCTGCAAACATTTCAGAACTCTTATTCCTTGCAAATCTGGAAAATGAAAAAAATTTCATTGAATATTTTTTTTAAAAACTAACACTTCGGAGTCATCCCAACCTCCAGGCACTTGTCAATTCGGCATTTTCTGCACGGATGTGATTTTTGGGTTCTTTTTTGACATGTACAATTTTTCTTCATTTTTGGAGATTCGAAATAGCGACGGAAGAATGCGGCACAGGCTCTGGAAATGTTTTTTTTTCAGATTTTCAGAATTTCGGAATCTCAAATTATTAGAAAAAATCTTACCTACAAGAAACACCTCCTAAATGAAGCTCAGATTTGTTAGAACCACAAATCGGACACATGAAAATCTCCGAAAAATCTGAAAATACAATATCTGACATGGAACTCCGGTTCTTCAAAATAAAAAGGACAAGACATAAAAAAAAAAGAAAACAATTTTTTTCAGATTCTTCTGATATTTCCAGCATTGTAAAAGTTGAGATTCATTTTTAAGTGTTATTCTAATTTCCAGCGTTTTTTGTATTAAAAAACGATTTTTTGGTTGCTTTGGAAAAAAATAGAAGCAAGAAATTTATTTAAAAGTGGTAAAAACATATTTTCGAATCCGGAAAATGAAAATTTCCATACTGCAATATCAGATTCAAAGCTTGAAACCAGTGATTCGGGCAGCTTCTAAGAAACACATTGTCTACTTTGACCAAATTTATCTCGGTCCATGCAGAAGATA</canonical>
            <polymorphic>CCGCACCATATTCCATACAAGATTCATATCATCCTGTGTCATACAAGTAATGTCATAAATATTCTTCCATTCTTTCTCTCCTTGTTTCGTTCTCGTATCTCTCATTTCTTTGAAATCCTGCCAACTTCGAAATGCGAAATCTAATTTAGCAGTTGCTCGAGATATTATTCCGCCCTGAAAACAATTTTTTGGATACCGGGAGGCCAAAATTTAAATTTTTGATTATTAAACTTACATTCAAGGAACTGGACGAACTTGGCACATTCTGCAAACATTTCAGAACTCTTATTCCTTGCAAATCTGGAAAATGAAAAAAATTTCATTGAATATTTTTTTTAAAAACTAACACTTCGGAGTCATCCCAACCTCCAGGCACTTGTCAATTCGGCATTTTCTGCACGGATGTGATTTTTGGGTTCTTTTTTGACATGTACAATTTTTCTTCATTTTTGGAGATTCGAAATAGCGACGGAAGAATGCGGCACAGGCTCTGGAAATGYTTTTTTTTCAGATTTTCAGAATTTCGGAATCTCAAATTATTAGAAAAAATCTTACCTACAAGAAACACCTCCTAAATGAAGCTCAGATTTGTTAGAACCACAAATCGGACACATGAAAATCTCCGAAAAATCTGAAAATACAATATCTGACATGGAACTCCGGTTCTTCAAAATAAAAAGGACAAGACATAAAAAAAAAAGAAAACAATTTTTTTCAGATTCTTCTGATATTTCCAGCATTGTAAAAGTTGAGATTCATTTTTAAGTGTTATTCTAATTTCCAGCGTTTTTTGTATTAAAAAACGATTTTTTGGTTGCTTTGGAAAAAAATAGAAGCAAGAAATTTATTTAAAAGTGGTAAAAACATATTTTCGAATCCGGAAAATGAAAATTTCCATACTGCAATATCAGATTCAAAGCTTGAAACCAGTGATTCGGGCAGCTTCTAAGAAACACATTGTCTACTTTGACCAAATTTATCTCGGTCCATGCAGAAGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCTTCATTTTTGGAGATT</pcr_primer_p1>
		<pcr_primer_p2>TTGTCCTTTTTATTTTGAAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCTTCATTTTTGGAGATTCGAAATAGCGACGGAAGAATGCGGCACAGGCTCTGGAAATGTTTTTTTTTCAGATTTTCAGAATTTCGGAATCTCAAATTATTAGAAAAAATCTTACCTACAAGAAACACCTCCTAAATGAAGCTCAGATTTGTTAGAACCACAAATCGGACACATGAAAATCTCCGAAAAATCTGAAAATACAATATCTGACATGGAACTCCGGTTCTTCAAAATAAAAAGGACAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCTTCATTTTTGGAGATTCGAAATAGCGACGGAAGAATGCGGCACAGGCTCTGGAAATGYTTTTTTTTCAGATTTTCAGAATTTCGGAATCTCAAATTATTAGAAAAAATCTTACCTACAAGAAACACCTCCTAAATGAAGCTCAGATTTGTTAGAACCACAAATCGGACACATGAAAATCTCCGAAAAATCTGAAAATACAATATCTGACATGGAACTCCGGTTCTTCAAAATAAAAAGGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30866</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>72785</contig_pos>
        <strand>+</strand>
        <context>TGACATGGAA[C/T]TCCGGTTCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACACATGAAAATCTCCGAAAAATCTGAAAATACAATATCTGACATGGAA</left_flank>
        <right_flank>TCCGGTTCTTCAAAATAAAAAGGACAAGACATAAAAAAAAAAGAAAACAA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGATATTATTCCGCCCTGAAAACAATTTTTTGGATACCGGGAGGCCAAAATTTAAATTTTTGATTATTAAACTTACATTCAAGGAACTGGACGAACTTGGCACATTCTGCAAACATTTCAGAACTCTTATTCCTTGCAAATCTGGAAAATGAAAAAAATTTCATTGAATATTTTTTTTAAAAACTAACACTTCGGAGTCATCCCAACCTCCAGGCACTTGTCAATTCGGCATTTTCTGCACGGATGTGATTTTTGGGTTCTTTTTTGACATGTACAATTTTTCTTCATTTTTGGAGATTCGAAATAGCGACGGAAGAATGCGGCACAGGCTCTGGAAATGTTTTTTTTTCAGATTTTCAGAATTTCGGAATCTCAAATTATTAGAAAAAATCTTACCTACAAGAAACACCTCCTAAATGAAGCTCAGATTTGTTAGAACCACAAATCGGACACATGAAAATCTCCGAAAAATCTGAAAATACAATATCTGACATGGAACTCCGGTTCTTCAAAATAAAAAGGACAAGACATAAAAAAAAAAGAAAACAATTTTTTTCAGATTCTTCTGATATTTCCAGCATTGTAAAAGTTGAGATTCATTTTTAAGTGTTATTCTAATTTCCAGCGTTTTTTGTATTAAAAAACGATTTTTTGGTTGCTTTGGAAAAAAATAGAAGCAAGAAATTTATTTAAAAGTGGTAAAAACATATTTTCGAATCCGGAAAATGAAAATTTCCATACTGCAATATCAGATTCAAAGCTTGAAACCAGTGATTCGGGCAGCTTCTAAGAAACACATTGTCTACTTTGACCAAATTTATCTCGGTCCATGCAGAAGATATCAAAAATGGCTAACTGACAAAATGTTCATTAGAATTTTAGAAAAGTTTTGTTAACTGATCATTTTTTGATTTCTCTTATAGGAGCCGAGATGAATCAGGTCAAACTTTACAGTGTGGGGAAGTTACAGATTTCACAGGAAACTGCGTTAACGGTGAT</canonical>
            <polymorphic>GAGATATTATTCCGCCCTGAAAACAATTTTTTGGATACCGGGAGGCCAAAATTTAAATTTTTGATTATTAAACTTACATTCAAGGAACTGGACGAACTTGGCACATTCTGCAAACATTTCAGAACTCTTATTCCTTGCAAATCTGGAAAATGAAAAAAATTTCATTGAATATTTTTTTTAAAAACTAACACTTCGGAGTCATCCCAACCTCCAGGCACTTGTCAATTCGGCATTTTCTGCACGGATGTGATTTTTGGGTTCTTTTTTGACATGTACAATTTTTCTTCATTTTTGGAGATTCGAAATAGCGACGGAAGAATGCGGCACAGGCTCTGGAAATGTTTTTTTTTCAGATTTTCAGAATTTCGGAATCTCAAATTATTAGAAAAAATCTTACCTACAAGAAACACCTCCTAAATGAAGCTCAGATTTGTTAGAACCACAAATCGGACACATGAAAATCTCCGAAAAATCTGAAAATACAATATCTGACATGGAAYTCCGGTTCTTCAAAATAAAAAGGACAAGACATAAAAAAAAAAGAAAACAATTTTTTTCAGATTCTTCTGATATTTCCAGCATTGTAAAAGTTGAGATTCATTTTTAAGTGTTATTCTAATTTCCAGCGTTTTTTGTATTAAAAAACGATTTTTTGGTTGCTTTGGAAAAAAATAGAAGCAAGAAATTTATTTAAAAGTGGTAAAAACATATTTTCGAATCCGGAAAATGAAAATTTCCATACTGCAATATCAGATTCAAAGCTTGAAACCAGTGATTCGGGCAGCTTCTAAGAAACACATTGTCTACTTTGACCAAATTTATCTCGGTCCATGCAGAAGATATCAAAAATGGCTAACTGACAAAATGTTCATTAGAATTTTAGAAAAGTTTTGTTAACTGATCATTTTTTGATTTCTCTTATAGGAGCCGAGATGAATCAGGTCAAACTTTACAGTGTGGGGAAGTTACAGATTTCACAGGAAACTGCGTTAACGGTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCTTACCTACAAGAAACACC</pcr_primer_p1>
		<pcr_primer_p2>AAAACGCTGGAAATTAGAATAAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAAATCTTACCTACAAGAAACACCTCCTAAATGAAGCTCAGATTTGTTAGAACCACAAATCGGACACATGAAAATCTCCGAAAAATCTGAAAATACAATATCTGACATGGAACTCCGGTTCTTCAAAATAAAAAGGACAAGACATAAAAAAAAAAGAAAACAATTTTTTTCAGATTCTTCTGATATTTCCAGCATTGTAAAAGTTGAGATTCATTTTTAAGTGTTATTCTAATTTCCAGCGTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAATCTTACCTACAAGAAACACCTCCTAAATGAAGCTCAGATTTGTTAGAACCACAAATCGGACACATGAAAATCTCCGAAAAATCTGAAAATACAATATCTGACATGGAAYTCCGGTTCTTCAAAATAAAAAGGACAAGACATAAAAAAAAAAGAAAACAATTTTTTTCAGATTCTTCTGATATTTCCAGCATTGTAAAAGTTGAGATTCATTTTTAAGTGTTATTCTAATTTCCAGCGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30867</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>72893</contig_pos>
        <strand>+</strand>
        <context>TCATTTTTAA[A/G]TGTTATTCTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGATTCTTCTGATATTTCCAGCATTGTAAAAGTTGAGATTCATTTTTAA</left_flank>
        <right_flank>TGTTATTCTAATTTCCAGCGTTTTTTGTATTAAAAAACGATTTTTTGGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCAAACATTTCAGAACTCTTATTCCTTGCAAATCTGGAAAATGAAAAAAATTTCATTGAATATTTTTTTTAAAAACTAACACTTCGGAGTCATCCCAACCTCCAGGCACTTGTCAATTCGGCATTTTCTGCACGGATGTGATTTTTGGGTTCTTTTTTGACATGTACAATTTTTCTTCATTTTTGGAGATTCGAAATAGCGACGGAAGAATGCGGCACAGGCTCTGGAAATGTTTTTTTTTCAGATTTTCAGAATTTCGGAATCTCAAATTATTAGAAAAAATCTTACCTACAAGAAACACCTCCTAAATGAAGCTCAGATTTGTTAGAACCACAAATCGGACACATGAAAATCTCCGAAAAATCTGAAAATACAATATCTGACATGGAACTCCGGTTCTTCAAAATAAAAAGGACAAGACATAAAAAAAAAAGAAAACAATTTTTTTCAGATTCTTCTGATATTTCCAGCATTGTAAAAGTTGAGATTCATTTTTAAGTGTTATTCTAATTTCCAGCGTTTTTTGTATTAAAAAACGATTTTTTGGTTGCTTTGGAAAAAAATAGAAGCAAGAAATTTATTTAAAAGTGGTAAAAACATATTTTCGAATCCGGAAAATGAAAATTTCCATACTGCAATATCAGATTCAAAGCTTGAAACCAGTGATTCGGGCAGCTTCTAAGAAACACATTGTCTACTTTGACCAAATTTATCTCGGTCCATGCAGAAGATATCAAAAATGGCTAACTGACAAAATGTTCATTAGAATTTTAGAAAAGTTTTGTTAACTGATCATTTTTTGATTTCTCTTATAGGAGCCGAGATGAATCAGGTCAAACTTTACAGTGTGGGGAAGTTACAGATTTCACAGGAAACTGCGTTAACGGTGATATGTTGGAATTACCGGTCTTACGGTATTTTTCAAACTATAACCTTCACTTGAAAAAATTCCAATAATATTCCTGAAATAAACAATCATCTGAAAATCATATTTTGTAT</canonical>
            <polymorphic>TGCAAACATTTCAGAACTCTTATTCCTTGCAAATCTGGAAAATGAAAAAAATTTCATTGAATATTTTTTTTAAAAACTAACACTTCGGAGTCATCCCAACCTCCAGGCACTTGTCAATTCGGCATTTTCTGCACGGATGTGATTTTTGGGTTCTTTTTTGACATGTACAATTTTTCTTCATTTTTGGAGATTCGAAATAGCGACGGAAGAATGCGGCACAGGCTCTGGAAATGTTTTTTTTTCAGATTTTCAGAATTTCGGAATCTCAAATTATTAGAAAAAATCTTACCTACAAGAAACACCTCCTAAATGAAGCTCAGATTTGTTAGAACCACAAATCGGACACATGAAAATCTCCGAAAAATCTGAAAATACAATATCTGACATGGAACTCCGGTTCTTCAAAATAAAAAGGACAAGACATAAAAAAAAAAGAAAACAATTTTTTTCAGATTCTTCTGATATTTCCAGCATTGTAAAAGTTGAGATTCATTTTTAARTGTTATTCTAATTTCCAGCGTTTTTTGTATTAAAAAACGATTTTTTGGTTGCTTTGGAAAAAAATAGAAGCAAGAAATTTATTTAAAAGTGGTAAAAACATATTTTCGAATCCGGAAAATGAAAATTTCCATACTGCAATATCAGATTCAAAGCTTGAAACCAGTGATTCGGGCAGCTTCTAAGAAACACATTGTCTACTTTGACCAAATTTATCTCGGTCCATGCAGAAGATATCAAAAATGGCTAACTGACAAAATGTTCATTAGAATTTTAGAAAAGTTTTGTTAACTGATCATTTTTTGATTTCTCTTATAGGAGCCGAGATGAATCAGGTCAAACTTTACAGTGTGGGGAAGTTACAGATTTCACAGGAAACTGCGTTAACGGTGATATGTTGGAATTACCGGTCTTACGGTATTTTTCAAACTATAACCTTCACTTGAAAAAATTCCAATAATATTCCTGAAATAAACAATCATCTGAAAATCATATTTTGTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>160 157 89 83 82 77 75 61 49 33 27 24 23 21 18 11 8 2</canonical_bands>
                <polymorphic_bands>246 160 83 82 77 75 61 49 33 27 24 23 21 18 11 8 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGAAAAATCTGAAAATACAATA</pcr_primer_p1>
		<pcr_primer_p2>TTCGAAAATATGTTTTTACCACT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CCGAAAAATCTGAAAATACAATATCTGACATGGAACTCCGGTTCTTCAAAATAAAAAGGACAAGACATAAAAAAAAAAGAAAACAATTTTTTTCAGATTCTTCTGATATTTCCAGCATTGTAAAAGTTGAGATTCATTTTTAAGTGTTATTCTAATTTCCAGCGTTTTTTGTATTAAAAAACGATTTTTTGGTTGCTTTGGAAAAAAATAGAAGCAAGAAATTTATTTAAAAGTGGTAAAAACATATTTTCGAA</canonical_amplicon>
		<polymorphic_amplicon>CCGAAAAATCTGAAAATACAATATCTGACATGGAACTCCGGTTCTTCAAAATAAAAAGGACAAGACATAAAAAAAAAAGAAAACAATTTTTTTCAGATTCTTCTGATATTTCCAGCATTGTAAAAGTTGAGATTCATTTTTAARTGTTATTCTAATTTCCAGCGTTTTTTGTATTAAAAAACGATTTTTTGGTTGCTTTGGAAAAAAATAGAAGCAAGAAATTTATTTAAAAGTGGTAAAAACATATTTTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30868</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>72952</contig_pos>
        <strand>+</strand>
        <context>TTGCTTTGGA[A/G]AAAAATAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATTTCCAGCGTTTTTTGTATTAAAAAACGATTTTTTGGTTGCTTTGGA</left_flank>
        <right_flank>AAAAATAGAAGCAAGAAATTTATTTAAAAGTGGTAAAAACATATTTTCGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATTTTTTTTAAAAACTAACACTTCGGAGTCATCCCAACCTCCAGGCACTTGTCAATTCGGCATTTTCTGCACGGATGTGATTTTTGGGTTCTTTTTTGACATGTACAATTTTTCTTCATTTTTGGAGATTCGAAATAGCGACGGAAGAATGCGGCACAGGCTCTGGAAATGTTTTTTTTTCAGATTTTCAGAATTTCGGAATCTCAAATTATTAGAAAAAATCTTACCTACAAGAAACACCTCCTAAATGAAGCTCAGATTTGTTAGAACCACAAATCGGACACATGAAAATCTCCGAAAAATCTGAAAATACAATATCTGACATGGAACTCCGGTTCTTCAAAATAAAAAGGACAAGACATAAAAAAAAAAGAAAACAATTTTTTTCAGATTCTTCTGATATTTCCAGCATTGTAAAAGTTGAGATTCATTTTTAAGTGTTATTCTAATTTCCAGCGTTTTTTGTATTAAAAAACGATTTTTTGGTTGCTTTGGAAAAAAATAGAAGCAAGAAATTTATTTAAAAGTGGTAAAAACATATTTTCGAATCCGGAAAATGAAAATTTCCATACTGCAATATCAGATTCAAAGCTTGAAACCAGTGATTCGGGCAGCTTCTAAGAAACACATTGTCTACTTTGACCAAATTTATCTCGGTCCATGCAGAAGATATCAAAAATGGCTAACTGACAAAATGTTCATTAGAATTTTAGAAAAGTTTTGTTAACTGATCATTTTTTGATTTCTCTTATAGGAGCCGAGATGAATCAGGTCAAACTTTACAGTGTGGGGAAGTTACAGATTTCACAGGAAACTGCGTTAACGGTGATATGTTGGAATTACCGGTCTTACGGTATTTTTCAAACTATAACCTTCACTTGAAAAAATTCCAATAATATTCCTGAAATAAACAATCATCTGAAAATCATATTTTGTATAGATTTTGAAAAAAAGGATTTTGAATTCATACTGGTCGATGCACCATGTAACCAGTTAT</canonical>
            <polymorphic>AATATTTTTTTTAAAAACTAACACTTCGGAGTCATCCCAACCTCCAGGCACTTGTCAATTCGGCATTTTCTGCACGGATGTGATTTTTGGGTTCTTTTTTGACATGTACAATTTTTCTTCATTTTTGGAGATTCGAAATAGCGACGGAAGAATGCGGCACAGGCTCTGGAAATGTTTTTTTTTCAGATTTTCAGAATTTCGGAATCTCAAATTATTAGAAAAAATCTTACCTACAAGAAACACCTCCTAAATGAAGCTCAGATTTGTTAGAACCACAAATCGGACACATGAAAATCTCCGAAAAATCTGAAAATACAATATCTGACATGGAACTCCGGTTCTTCAAAATAAAAAGGACAAGACATAAAAAAAAAAGAAAACAATTTTTTTCAGATTCTTCTGATATTTCCAGCATTGTAAAAGTTGAGATTCATTTTTAAGTGTTATTCTAATTTCCAGCGTTTTTTGTATTAAAAAACGATTTTTTGGTTGCTTTGGARAAAAATAGAAGCAAGAAATTTATTTAAAAGTGGTAAAAACATATTTTCGAATCCGGAAAATGAAAATTTCCATACTGCAATATCAGATTCAAAGCTTGAAACCAGTGATTCGGGCAGCTTCTAAGAAACACATTGTCTACTTTGACCAAATTTATCTCGGTCCATGCAGAAGATATCAAAAATGGCTAACTGACAAAATGTTCATTAGAATTTTAGAAAAGTTTTGTTAACTGATCATTTTTTGATTTCTCTTATAGGAGCCGAGATGAATCAGGTCAAACTTTACAGTGTGGGGAAGTTACAGATTTCACAGGAAACTGCGTTAACGGTGATATGTTGGAATTACCGGTCTTACGGTATTTTTCAAACTATAACCTTCACTTGAAAAAATTCCAATAATATTCCTGAAATAAACAATCATCTGAAAATCATATTTTGTATAGATTTTGAAAAAAAGGATTTTGAATTCATACTGGTCGATGCACCATGTAACCAGTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCTGAAAATACAATATCTGACA</pcr_primer_p1>
		<pcr_primer_p2>GGATTCGAAAATATGTTTTTACC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAAATCTGAAAATACAATATCTGACATGGAACTCCGGTTCTTCAAAATAAAAAGGACAAGACATAAAAAAAAAAGAAAACAATTTTTTTCAGATTCTTCTGATATTTCCAGCATTGTAAAAGTTGAGATTCATTTTTAAGTGTTATTCTAATTTCCAGCGTTTTTTGTATTAAAAAACGATTTTTTGGTTGCTTTGGAAAAAAATAGAAGCAAGAAATTTATTTAAAAGTGGTAAAAACATATTTTCGAATCC</canonical_amplicon>
		<polymorphic_amplicon>AAAATCTGAAAATACAATATCTGACATGGAACTCCGGTTCTTCAAAATAAAAAGGACAAGACATAAAAAAAAAAGAAAACAATTTTTTTCAGATTCTTCTGATATTTCCAGCATTGTAAAAGTTGAGATTCATTTTTAAGTGTTATTCTAATTTCCAGCGTTTTTTGTATTAAAAAACGATTTTTTGGTTGCTTTGGARAAAAATAGAAGCAAGAAATTTATTTAAAAGTGGTAAAAACATATTTTCGAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30869</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>73029</contig_pos>
        <strand>+</strand>
        <context>TTTCCATACT[A/G]CAATATCAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGTGGTAAAAACATATTTTCGAATCCGGAAAATGAAAATTTCCATACT</left_flank>
        <right_flank>CAATATCAGATTCAAAGCTTGAAACCAGTGATTCGGGCAGCTTCTAAGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTGATTTTTGGGTTCTTTTTTGACATGTACAATTTTTCTTCATTTTTGGAGATTCGAAATAGCGACGGAAGAATGCGGCACAGGCTCTGGAAATGTTTTTTTTTCAGATTTTCAGAATTTCGGAATCTCAAATTATTAGAAAAAATCTTACCTACAAGAAACACCTCCTAAATGAAGCTCAGATTTGTTAGAACCACAAATCGGACACATGAAAATCTCCGAAAAATCTGAAAATACAATATCTGACATGGAACTCCGGTTCTTCAAAATAAAAAGGACAAGACATAAAAAAAAAAGAAAACAATTTTTTTCAGATTCTTCTGATATTTCCAGCATTGTAAAAGTTGAGATTCATTTTTAAGTGTTATTCTAATTTCCAGCGTTTTTTGTATTAAAAAACGATTTTTTGGTTGCTTTGGAAAAAAATAGAAGCAAGAAATTTATTTAAAAGTGGTAAAAACATATTTTCGAATCCGGAAAATGAAAATTTCCATACTGCAATATCAGATTCAAAGCTTGAAACCAGTGATTCGGGCAGCTTCTAAGAAACACATTGTCTACTTTGACCAAATTTATCTCGGTCCATGCAGAAGATATCAAAAATGGCTAACTGACAAAATGTTCATTAGAATTTTAGAAAAGTTTTGTTAACTGATCATTTTTTGATTTCTCTTATAGGAGCCGAGATGAATCAGGTCAAACTTTACAGTGTGGGGAAGTTACAGATTTCACAGGAAACTGCGTTAACGGTGATATGTTGGAATTACCGGTCTTACGGTATTTTTCAAACTATAACCTTCACTTGAAAAAATTCCAATAATATTCCTGAAATAAACAATCATCTGAAAATCATATTTTGTATAGATTTTGAAAAAAAGGATTTTGAATTCATACTGGTCGATGCACCATGTAACCAGTTATTAGTCACATTAAACAAGTCAAACATTAGTTTGTAGTTTTGCAGTTTGTAGTTAAACCCCATACTTAAAATCAAAATA</canonical>
            <polymorphic>ATGTGATTTTTGGGTTCTTTTTTGACATGTACAATTTTTCTTCATTTTTGGAGATTCGAAATAGCGACGGAAGAATGCGGCACAGGCTCTGGAAATGTTTTTTTTTCAGATTTTCAGAATTTCGGAATCTCAAATTATTAGAAAAAATCTTACCTACAAGAAACACCTCCTAAATGAAGCTCAGATTTGTTAGAACCACAAATCGGACACATGAAAATCTCCGAAAAATCTGAAAATACAATATCTGACATGGAACTCCGGTTCTTCAAAATAAAAAGGACAAGACATAAAAAAAAAAGAAAACAATTTTTTTCAGATTCTTCTGATATTTCCAGCATTGTAAAAGTTGAGATTCATTTTTAAGTGTTATTCTAATTTCCAGCGTTTTTTGTATTAAAAAACGATTTTTTGGTTGCTTTGGAAAAAAATAGAAGCAAGAAATTTATTTAAAAGTGGTAAAAACATATTTTCGAATCCGGAAAATGAAAATTTCCATACTRCAATATCAGATTCAAAGCTTGAAACCAGTGATTCGGGCAGCTTCTAAGAAACACATTGTCTACTTTGACCAAATTTATCTCGGTCCATGCAGAAGATATCAAAAATGGCTAACTGACAAAATGTTCATTAGAATTTTAGAAAAGTTTTGTTAACTGATCATTTTTTGATTTCTCTTATAGGAGCCGAGATGAATCAGGTCAAACTTTACAGTGTGGGGAAGTTACAGATTTCACAGGAAACTGCGTTAACGGTGATATGTTGGAATTACCGGTCTTACGGTATTTTTCAAACTATAACCTTCACTTGAAAAAATTCCAATAATATTCCTGAAATAAACAATCATCTGAAAATCATATTTTGTATAGATTTTGAAAAAAAGGATTTTGAATTCATACTGGTCGATGCACCATGTAACCAGTTATTAGTCACATTAAACAAGTCAAACATTAGTTTGTAGTTTTGCAGTTTGTAGTTAAACCCCATACTTAAAATCAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 316 89 58 37</canonical_bands>
                <polymorphic_bands>589 316 58 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAAGAAATTTATTTAAAAGTGG</pcr_primer_p1>
		<pcr_primer_p2>GTAATTCCAACATATCACCGTTA</pcr_primer_p2>
		<pcr_amplicon_size>336</pcr_amplicon_size>
		<canonical_amplicon>GCAAGAAATTTATTTAAAAGTGGTAAAAACATATTTTCGAATCCGGAAAATGAAAATTTCCATACTGCAATATCAGATTCAAAGCTTGAAACCAGTGATTCGGGCAGCTTCTAAGAAACACATTGTCTACTTTGACCAAATTTATCTCGGTCCATGCAGAAGATATCAAAAATGGCTAACTGACAAAATGTTCATTAGAATTTTAGAAAAGTTTTGTTAACTGATCATTTTTTGATTTCTCTTATAGGAGCCGAGATGAATCAGGTCAAACTTTACAGTGTGGGGAAGTTACAGATTTCACAGGAAACTGCGTTAACGGTGATATGTTGGAATTAC</canonical_amplicon>
		<polymorphic_amplicon>GCAAGAAATTTATTTAAAAGTGGTAAAAACATATTTTCGAATCCGGAAAATGAAAATTTCCATACTRCAATATCAGATTCAAAGCTTGAAACCAGTGATTCGGGCAGCTTCTAAGAAACACATTGTCTACTTTGACCAAATTTATCTCGGTCCATGCAGAAGATATCAAAAATGGCTAACTGACAAAATGTTCATTAGAATTTTAGAAAAGTTTTGTTAACTGATCATTTTTTGATTTCTCTTATAGGAGCCGAGATGAATCAGGTCAAACTTTACAGTGTGGGGAAGTTACAGATTTCACAGGAAACTGCGTTAACGGTGATATGTTGGAATTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30870</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>73046</contig_pos>
        <strand>+</strand>
        <context>CAGATTCAAA[A/G]CWTGAAACCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCGAATCCGGAAAATGAAAATTTCCATACTGCAATATCAGATTCAAA</left_flank>
        <right_flank>CTTGAAACCAGTGATTCGGGCAGCTTCTAAGAAACACATTGTCTACTTTG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTGACATGTACAATTTTTCTTCATTTTTGGAGATTCGAAATAGCGACGGAAGAATGCGGCACAGGCTCTGGAAATGTTTTTTTTTCAGATTTTCAGAATTTCGGAATCTCAAATTATTAGAAAAAATCTTACCTACAAGAAACACCTCCTAAATGAAGCTCAGATTTGTTAGAACCACAAATCGGACACATGAAAATCTCCGAAAAATCTGAAAATACAATATCTGACATGGAACTCCGGTTCTTCAAAATAAAAAGGACAAGACATAAAAAAAAAAGAAAACAATTTTTTTCAGATTCTTCTGATATTTCCAGCATTGTAAAAGTTGAGATTCATTTTTAAGTGTTATTCTAATTTCCAGCGTTTTTTGTATTAAAAAACGATTTTTTGGTTGCTTTGGAAAAAAATAGAAGCAAGAAATTTATTTAAAAGTGGTAAAAACATATTTTCGAATCCGGAAAATGAAAATTTCCATACTGCAATATCAGATTCAAAGCTTGAAACCAGTGATTCGGGCAGCTTCTAAGAAACACATTGTCTACTTTGACCAAATTTATCTCGGTCCATGCAGAAGATATCAAAAATGGCTAACTGACAAAATGTTCATTAGAATTTTAGAAAAGTTTTGTTAACTGATCATTTTTTGATTTCTCTTATAGGAGCCGAGATGAATCAGGTCAAACTTTACAGTGTGGGGAAGTTACAGATTTCACAGGAAACTGCGTTAACGGTGATATGTTGGAATTACCGGTCTTACGGTATTTTTCAAACTATAACCTTCACTTGAAAAAATTCCAATAATATTCCTGAAATAAACAATCATCTGAAAATCATATTTTGTATAGATTTTGAAAAAAAGGATTTTGAATTCATACTGGTCGATGCACCATGTAACCAGTTATTAGTCACATTAAACAAGTCAAACATTAGTTTGTAGTTTTGCAGTTTGTAGTTAAACCCCATACTTAAAATCAAAATAAGTCATAGAACGAAATC</canonical>
            <polymorphic>TTTTTTGACATGTACAATTTTTCTTCATTTTTGGAGATTCGAAATAGCGACGGAAGAATGCGGCACAGGCTCTGGAAATGTTTTTTTTTCAGATTTTCAGAATTTCGGAATCTCAAATTATTAGAAAAAATCTTACCTACAAGAAACACCTCCTAAATGAAGCTCAGATTTGTTAGAACCACAAATCGGACACATGAAAATCTCCGAAAAATCTGAAAATACAATATCTGACATGGAACTCCGGTTCTTCAAAATAAAAAGGACAAGACATAAAAAAAAAAGAAAACAATTTTTTTCAGATTCTTCTGATATTTCCAGCATTGTAAAAGTTGAGATTCATTTTTAAGTGTTATTCTAATTTCCAGCGTTTTTTGTATTAAAAAACGATTTTTTGGTTGCTTTGGAAAAAAATAGAAGCAAGAAATTTATTTAAAAGTGGTAAAAACATATTTTCGAATCCGGAAAATGAAAATTTCCATACTGCAATATCAGATTCAAARCTTGAAACCAGTGATTCGGGCAGCTTCTAAGAAACACATTGTCTACTTTGACCAAATTTATCTCGGTCCATGCAGAAGATATCAAAAATGGCTAACTGACAAAATGTTCATTAGAATTTTAGAAAAGTTTTGTTAACTGATCATTTTTTGATTTCTCTTATAGGAGCCGAGATGAATCAGGTCAAACTTTACAGTGTGGGGAAGTTACAGATTTCACAGGAAACTGCGTTAACGGTGATATGTTGGAATTACCGGTCTTACGGTATTTTTCAAACTATAACCTTCACTTGAAAAAATTCCAATAATATTCCTGAAATAAACAATCATCTGAAAATCATATTTTGTATAGATTTTGAAAAAAAGGATTTTGAATTCATACTGGTCGATGCACCATGTAACCAGTTATTAGTCACATTAAACAAGTCAAACATTAGTTTGTAGTTTTGCAGTTTGTAGTTAAACCCCATACTTAAAATCAAAATAAGTCATAGAACGAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>477 338 162 23</canonical_bands>
                <polymorphic_bands>477 361 162</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>338 334 93 75 69 68 23</canonical_bands>
                <polymorphic_bands>361 334 93 75 69 68</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGTAAAAACATATTTTCGAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATACCGTAAGACCGGTAA</pcr_primer_p2>
		<pcr_amplicon_size>333</pcr_amplicon_size>
		<canonical_amplicon>TGGTAAAAACATATTTTCGAATCCGGAAAATGAAAATTTCCATACTGCAATATCAGATTCAAAGCTTGAAACCAGTGATTCGGGCAGCTTCTAAGAAACACATTGTCTACTTTGACCAAATTTATCTCGGTCCATGCAGAAGATATCAAAAATGGCTAACTGACAAAATGTTCATTAGAATTTTAGAAAAGTTTTGTTAACTGATCATTTTTTGATTTCTCTTATAGGAGCCGAGATGAATCAGGTCAAACTTTACAGTGTGGGGAAGTTACAGATTTCACAGGAAACTGCGTTAACGGTGATATGTTGGAATTACCGGTCTTACGGTATTTT</canonical_amplicon>
		<polymorphic_amplicon>TGGTAAAAACATATTTTCGAATCCGGAAAATGAAAATTTCCATACTGCAATATCAGATTCAAARCTTGAAACCAGTGATTCGGGCAGCTTCTAAGAAACACATTGTCTACTTTGACCAAATTTATCTCGGTCCATGCAGAAGATATCAAAAATGGCTAACTGACAAAATGTTCATTAGAATTTTAGAAAAGTTTTGTTAACTGATCATTTTTTGATTTCTCTTATAGGAGCCGAGATGAATCAGGTCAAACTTTACAGTGTGGGGAAGTTACAGATTTCACAGGAAACTGCGTTAACGGTGATATGTTGGAATTACCGGTCTTACGGTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30871</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>73048</contig_pos>
        <strand>+</strand>
        <context>GATTCAAARC[A/T]TGAAACCAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCGAATCCGGAAAATGAAAATTTCCATACTGCAATATCAGATTCAAAGC</left_flank>
        <right_flank>TGAAACCAGTGATTCGGGCAGCTTCTAAGAAACACATTGTCTACTTTGAC</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGACATGTACAATTTTTCTTCATTTTTGGAGATTCGAAATAGCGACGGAAGAATGCGGCACAGGCTCTGGAAATGTTTTTTTTTCAGATTTTCAGAATTTCGGAATCTCAAATTATTAGAAAAAATCTTACCTACAAGAAACACCTCCTAAATGAAGCTCAGATTTGTTAGAACCACAAATCGGACACATGAAAATCTCCGAAAAATCTGAAAATACAATATCTGACATGGAACTCCGGTTCTTCAAAATAAAAAGGACAAGACATAAAAAAAAAAGAAAACAATTTTTTTCAGATTCTTCTGATATTTCCAGCATTGTAAAAGTTGAGATTCATTTTTAAGTGTTATTCTAATTTCCAGCGTTTTTTGTATTAAAAAACGATTTTTTGGTTGCTTTGGAAAAAAATAGAAGCAAGAAATTTATTTAAAAGTGGTAAAAACATATTTTCGAATCCGGAAAATGAAAATTTCCATACTGCAATATCAGATTCAAAGCTTGAAACCAGTGATTCGGGCAGCTTCTAAGAAACACATTGTCTACTTTGACCAAATTTATCTCGGTCCATGCAGAAGATATCAAAAATGGCTAACTGACAAAATGTTCATTAGAATTTTAGAAAAGTTTTGTTAACTGATCATTTTTTGATTTCTCTTATAGGAGCCGAGATGAATCAGGTCAAACTTTACAGTGTGGGGAAGTTACAGATTTCACAGGAAACTGCGTTAACGGTGATATGTTGGAATTACCGGTCTTACGGTATTTTTCAAACTATAACCTTCACTTGAAAAAATTCCAATAATATTCCTGAAATAAACAATCATCTGAAAATCATATTTTGTATAGATTTTGAAAAAAAGGATTTTGAATTCATACTGGTCGATGCACCATGTAACCAGTTATTAGTCACATTAAACAAGTCAAACATTAGTTTGTAGTTTTGCAGTTTGTAGTTAAACCCCATACTTAAAATCAAAATAAGTCATAGAACGAAATCAA</canonical>
            <polymorphic>TTTTGACATGTACAATTTTTCTTCATTTTTGGAGATTCGAAATAGCGACGGAAGAATGCGGCACAGGCTCTGGAAATGTTTTTTTTTCAGATTTTCAGAATTTCGGAATCTCAAATTATTAGAAAAAATCTTACCTACAAGAAACACCTCCTAAATGAAGCTCAGATTTGTTAGAACCACAAATCGGACACATGAAAATCTCCGAAAAATCTGAAAATACAATATCTGACATGGAACTCCGGTTCTTCAAAATAAAAAGGACAAGACATAAAAAAAAAAGAAAACAATTTTTTTCAGATTCTTCTGATATTTCCAGCATTGTAAAAGTTGAGATTCATTTTTAAGTGTTATTCTAATTTCCAGCGTTTTTTGTATTAAAAAACGATTTTTTGGTTGCTTTGGAAAAAAATAGAAGCAAGAAATTTATTTAAAAGTGGTAAAAACATATTTTCGAATCCGGAAAATGAAAATTTCCATACTGCAATATCAGATTCAAAGCWTGAAACCAGTGATTCGGGCAGCTTCTAAGAAACACATTGTCTACTTTGACCAAATTTATCTCGGTCCATGCAGAAGATATCAAAAATGGCTAACTGACAAAATGTTCATTAGAATTTTAGAAAAGTTTTGTTAACTGATCATTTTTTGATTTCTCTTATAGGAGCCGAGATGAATCAGGTCAAACTTTACAGTGTGGGGAAGTTACAGATTTCACAGGAAACTGCGTTAACGGTGATATGTTGGAATTACCGGTCTTACGGTATTTTTCAAACTATAACCTTCACTTGAAAAAATTCCAATAATATTCCTGAAATAAACAATCATCTGAAAATCATATTTTGTATAGATTTTGAAAAAAAGGATTTTGAATTCATACTGGTCGATGCACCATGTAACCAGTTATTAGTCACATTAAACAAGTCAAACATTAGTTTGTAGTTTTGCAGTTTGTAGTTAAACCCCATACTTAAAATCAAAATAAGTCATAGAACGAAATCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>479 338 160 23</canonical_bands>
                <polymorphic_bands>479 361 160</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>338 336 93 75 68 67 23</canonical_bands>
                <polymorphic_bands>361 336 93 75 68 67</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGTAAAAACATATTTTCGAATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATACCGTAAGACCGGTAA</pcr_primer_p2>
		<pcr_amplicon_size>333</pcr_amplicon_size>
		<canonical_amplicon>TGGTAAAAACATATTTTCGAATCCGGAAAATGAAAATTTCCATACTGCAATATCAGATTCAAAGCTTGAAACCAGTGATTCGGGCAGCTTCTAAGAAACACATTGTCTACTTTGACCAAATTTATCTCGGTCCATGCAGAAGATATCAAAAATGGCTAACTGACAAAATGTTCATTAGAATTTTAGAAAAGTTTTGTTAACTGATCATTTTTTGATTTCTCTTATAGGAGCCGAGATGAATCAGGTCAAACTTTACAGTGTGGGGAAGTTACAGATTTCACAGGAAACTGCGTTAACGGTGATATGTTGGAATTACCGGTCTTACGGTATTTT</canonical_amplicon>
		<polymorphic_amplicon>TGGTAAAAACATATTTTCGAATCCGGAAAATGAAAATTTCCATACTGCAATATCAGATTCAAAGCWTGAAACCAGTGATTCGGGCAGCTTCTAAGAAACACATTGTCTACTTTGACCAAATTTATCTCGGTCCATGCAGAAGATATCAAAAATGGCTAACTGACAAAATGTTCATTAGAATTTTAGAAAAGTTTTGTTAACTGATCATTTTTTGATTTCTCTTATAGGAGCCGAGATGAATCAGGTCAAACTTTACAGTGTGGGGAAGTTACAGATTTCACAGGAAACTGCGTTAACGGTGATATGTTGGAATTACCGGTCTTACGGTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30872</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>73264</contig_pos>
        <strand></strand>
        <context>cagatttcac[A/G]gGAAACTGCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAGATGAATCAGGTCAAACTTTACAGTGTGGGGAAGTTACAGATTTCAC</left_flank>
        <right_flank>GGAAACTGCGTTAACGGTGATATGTTGGAATTACCGGTCTTACGGTATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATACAATATCTGACATGGAACTCCGGTTCTTCAAAATAAAAAGGACAAGACATAAAAAAAAAAGAAAACAATTTTTTTCAGATTCTTCTGATATTTCCAGCATTGTAAAAGTTGAGATTCATTTTTAAGTGTTATTCTAATTTCCAGCGTTTTTTGTATTAAAAAACGATTTTTTGGTTGCTTTGGAAAAAAATAGAAGCAAGAAATTTATTTAAAAGTGGTAAAAACATATTTTCGAATCCGGAAAATGAAAATTTCCATACTGCAATATCAGATTCAAAGCTTGAAACCAGTGATTCGGGCAGCTTCTAAGAAACACATTGTCTACTTTGACCAAATTTATCTCGGTCCATGCAGAAGATATCAAAAATGGCTAACTGACAAAATGTTCATTAGAATTTTAGAAAAGTTTTGTTAACTGATCATTTTTTGATTTCTCTTATAGGAGCCGAGATGAATCAGGTCAAACTTTACAGTGTGGGGAAGTTACAGATTTCACAGGAAACTGCGTTAACGGTGATATGTTGGAATTACCGGTCTTACGGTATTTTTCAAACTATAACCTTCACTTGAAAAAATTCCAATAATATTCCTGAAATAAACAATCATCTGAAAATCATATTTTGTATAGATTTTGAAAAAAAGGATTTTGAATTCATACTGGTCGATGCACCATGTAACCAGTTATTAGTCACATTAAACAAGTCAAACATTAGTTTGTAGTTTTGCAGTTTGTAGTTAAACCCCATACTTAAAATCAAAATAAGTCATAGAACGAAATCAAAATCCCCAAAAATGTTAAAACAAAAAATAGTGCTTCACAGTTTTTGCAGAGCGCAACATAACGATTTTTGATCAGCCGGTGCAAAAAAAAACAAGGAAGAACGACCATATTTGAACAAAATGTTCCGAAAAACATGCAATAAAACTTTTCTGGGAAGAGTGGTGTTTTTTTGAAGTGGAATTCGTTCTTCGAAAAGTCACATTTTGCCCTTTTTAA</canonical>
            <polymorphic>ATACAATATCTGACATGGAACTCCGGTTCTTCAAAATAAAAAGGACAAGACATAAAAAAAAAAGAAAACAATTTTTTTCAGATTCTTCTGATATTTCCAGCATTGTAAAAGTTGAGATTCATTTTTAAGTGTTATTCTAATTTCCAGCGTTTTTTGTATTAAAAAACGATTTTTTGGTTGCTTTGGAAAAAAATAGAAGCAAGAAATTTATTTAAAAGTGGTAAAAACATATTTTCGAATCCGGAAAATGAAAATTTCCATACTGCAATATCAGATTCAAAGCTTGAAACCAGTGATTCGGGCAGCTTCTAAGAAACACATTGTCTACTTTGACCAAATTTATCTCGGTCCATGCAGAAGATATCAAAAATGGCTAACTGACAAAATGTTCATTAGAATTTTAGAAAAGTTTTGTTAACTGATCATTTTTTGATTTCTCTTATAGGAGCCGAGATGAATCAGGTCAAACTTTACAGTGTGGGGAAGTTACAGATTTCACRGGAAACTGCGTTAACGGTGATATGTTGGAATTACCGGTCTTACGGTATTTTTCAAACTATAACCTTCACTTGAAAAAATTCCAATAATATTCCTGAAATAAACAATCATCTGAAAATCATATTTTGTATAGATTTTGAAAAAAAGGATTTTGAATTCATACTGGTCGATGCACCATGTAACCAGTTATTAGTCACATTAAACAAGTCAAACATTAGTTTGTAGTTTTGCAGTTTGTAGTTAAACCCCATACTTAAAATCAAAATAAGTCATAGAACGAAATCAAAATCCCCAAAAATGTTAAAACAAAAAATAGTGCTTCACAGTTTTTGCAGAGCGCAACATAACGATTTTTGATCAGCCGGTGCAAAAAAAAACAAGGAAGAACGACCATATTTGAACAAAATGTTCCGAAAAACATGCAATAAAACTTTTCTGGGAAGAGTGGTGTTTTTTTGAAGTGGAATTCGTTCTTCGAAAAGTCACATTTTGCCCTTTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTAAAAACATATTTTCGAATC</pcr_primer_p1>
		<pcr_primer_p2>GGTTATAGTTTGAAAAATACCGTAA</pcr_primer_p2>
		<pcr_amplicon_size>346</pcr_amplicon_size>
		<canonical_amplicon>TGGTAAAAACATATTTTCGAATCCGGAAAATGAAAATTTCCATACTGCAATATCAGATTCAAAGCTTGAAACCAGTGATTCGGGCAGCTTCTAAGAAACACATTGTCTACTTTGACCAAATTTATCTCGGTCCATGCAGAAGATATCAAAAATGGCTAACTGACAAAATGTTCATTAGAATTTTAGAAAAGTTTTGTTAACTGATCATTTTTTGATTTCTCTTATAGGAGCCGAGATGAATCAGGTCAAACTTTACAGTGTGGGGAAGTTACAGATTTCACAGGAAACTGCGTTAACGGTGATATGTTGGAATTACCGGTCTTACGGTATTTTTCAAACTATAACC</canonical_amplicon>
		<polymorphic_amplicon>TGGTAAAAACATATTTTCGAATCCGGAAAATGAAAATTTCCATACTGCAATATCAGATTCAAAGCTTGAAACCAGTGATTCGGGCAGCTTCTAAGAAACACATTGTCTACTTTGACCAAATTTATCTCGGTCCATGCAGAAGATATCAAAAATGGCTAACTGACAAAATGTTCATTAGAATTTTAGAAAAGTTTTGTTAACTGATCATTTTTTGATTTCTCTTATAGGAGCCGAGATGAATCAGGTCAAACTTTACAGTGTGGGGAAGTTACAGATTTCACRGGAAACTGCGTTAACGGTGATATGTTGGAATTACCGGTCTTACGGTATTTTTCAAACTATAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30873</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>101471</contig_pos>
        <strand></strand>
        <context>gacaaaatat[G/T]tatcataata</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATCTCAATTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACAAAATAT</left_flank>
        <right_flank>TATCATAATATCAGTAACGTTTTATCAGTTAACCACTTTTTGATGTCTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTTGTTTTATAATTCCATCTTTTTCCGATTTTCCCAAAGTCGATTCGTATGCTTCTTTTTTGGCAAAAATCTTTTTCATAATTTTAACCATCAGTTTGTATTTGAATTTGTCGTCATGCTGAAAAAATGAAAAACTTGTTATATATTTAATCTATGAAAAAAGCAGTACCTTCGGTCCCTTATGTTTATTCCTCCCATTCCCTTTTTTCTTCTTCTTCAAATCTGCCGCAAAAACGTGTATTTCGTTGGTTGGATCCCATTTTTTCAACGAATCCATCGCTAATTCATCAGCGGAATAAATACATAATTTTCCGTCGTTCGTGAATGTATGGACCACGTAGTTTGTACCATCCGGCTTATCCAAGGATAGCATATATCTTCTGAAAATCAGAATACCGTAAACAACTCTAATAGAACGCCACCAGGCTCGTCAAATTTGAACCAATGTATCTCAATTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACAAAATATGTATCATAATATCAGTAACGTTTTATCAGTTAACCACTTTTTGATGTCTTTCATAAGAACCGAAATATATGGGCTCAAAGATGACAGTTTGGGTGGCGTTGTATTAGAAATAAAGTTTGCAGTAGTTTTGGATTTTCCGAATTCGAACAAAAAATAGACAAACAATCCCAAACACTCACTTCTCCTCAGACATTGTTCCTCGATGTAGTTAAATTGAAAAAAGAGAAAATATGCGTAGATTCGAAAATTGAAATCGTGGAAAAAATTTCGGAGATTAGCAAAGTTTTTGGATTTTTATATAATATTTTTCACGTGATACCCTAGTTTCTAGTATGCTAAAAAGCATGGCTATTCAAAATGACGGCAGGCAGGCTCCATTTTTTTACTCAATTTTATTTTTTTTTTCGCGTTGCATTTTCCTATTTTAAAAGTTTGGGTGACCTGGTTTATTTTTTTACGGACCCTTAAATAAATATTTTCATTTTATACCGTAAAACCTGT</canonical>
            <polymorphic>TCCTTGTTTTATAATTCCATCTTTTTCCGATTTTCCCAAAGTCGATTCGTATGCTTCTTTTTTGGCAAAAATCTTTTTCATAATTTTAACCATCAGTTTGTATTTGAATTTGTCGTCATGCTGAAAAAATGAAAAACTTGTTATATATTTAATCTATGAAAAAAGCAGTACCTTCGGTCCCTTATGTTTATTCCTCCCATTCCCTTTTTTCTTCTTCTTCAAATCTGCCGCAAAAACGTGTATTTCGTTGGTTGGATCCCATTTTTTCAACGAATCCATCGCTAATTCATCAGCGGAATAAATACATAATTTTCCGTCGTTCGTGAATGTATGGACCACGTAGTTTGTACCATCCGGCTTATCCAAGGATAGCATATATCTTCTGAAAATCAGAATACCGTAAACAACTCTAATAGAACGCCACCAGGCTCGTCAAATTTGAACCAATGTATCTCAATTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACAAAATATKTATCATAATATCAGTAACGTTTTATCAGTTAACCACTTTTTGATGTCTTTCATAAGAACCGAAATATATGGGCTCAAAGATGACAGTTTGGGTGGCGTTGTATTAGAAATAAAGTTTGCAGTAGTTTTGGATTTTCCGAATTCGAACAAAAAATAGACAAACAATCCCAAACACTCACTTCTCCTCAGACATTGTTCCTCGATGTAGTTAAATTGAAAAAAGAGAAAATATGCGTAGATTCGAAAATTGAAATCGTGGAAAAAATTTCGGAGATTAGCAAAGTTTTTGGATTTTTATATAATATTTTTCACGTGATACCCTAGTTTCTAGTATGCTAAAAAGCATGGCTATTCAAAATGACGGCAGGCAGGCTCCATTTTTTTACTCAATTTTATTTTTTTTTTCGCGTTGCATTTTCCTATTTTAAAAGTTTGGGTGACCTGGTTTATTTTTTTACGGACCCTTAAATAAATATTTTCATTTTATACCGTAAAACCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGGATAGCATATATCTTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>CCAAAACTACTGCAAACTTTATT</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>CAAGGATAGCATATATCTTCTGAAAATCAGAATACCGTAAACAACTCTAATAGAACGCCACCAGGCTCGTCAAATTTGAACCAATGTATCTCAATTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACAAAATATGTATCATAATATCAGTAACGTTTTATCAGTTAACCACTTTTTGATGTCTTTCATAAGAACCGAAATATATGGGCTCAAAGATGACAGTTTGGGTGGCGTTGTATTAGAAATAAAGTTTGCAGTAGTTTTGG</canonical_amplicon>
		<polymorphic_amplicon>CAAGGATAGCATATATCTTCTGAAAATCAGAATACCGTAAACAACTCTAATAGAACGCCACCAGGCTCGTCAAATTTGAACCAATGTATCTCAATTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACAAAATATKTATCATAATATCAGTAACGTTTTATCAGTTAACCACTTTTTGATGTCTTTCATAAGAACCGAAATATATGGGCTCAAAGATGACAGTTTGGGTGGCGTTGTATTAGAAATAAAGTTTGCAGTAGTTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30874</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>101486</contig_pos>
        <strand></strand>
        <context>ataatatcag[T/C]aacgttttat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAAGATATCAAAAAGTGGTCAACTGACAAAATATGTATCATAATATCAG</left_flank>
        <right_flank>AACGTTTTATCAGTTAACCACTTTTTGATGTCTTTCATAAGAACCGAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCATCTTTTTCCGATTTTCCCAAAGTCGATTCGTATGCTTCTTTTTTGGCAAAAATCTTTTTCATAATTTTAACCATCAGTTTGTATTTGAATTTGTCGTCATGCTGAAAAAATGAAAAACTTGTTATATATTTAATCTATGAAAAAAGCAGTACCTTCGGTCCCTTATGTTTATTCCTCCCATTCCCTTTTTTCTTCTTCTTCAAATCTGCCGCAAAAACGTGTATTTCGTTGGTTGGATCCCATTTTTTCAACGAATCCATCGCTAATTCATCAGCGGAATAAATACATAATTTTCCGTCGTTCGTGAATGTATGGACCACGTAGTTTGTACCATCCGGCTTATCCAAGGATAGCATATATCTTCTGAAAATCAGAATACCGTAAACAACTCTAATAGAACGCCACCAGGCTCGTCAAATTTGAACCAATGTATCTCAATTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACAAAATATGTATCATAATATCAGTAACGTTTTATCAGTTAACCACTTTTTGATGTCTTTCATAAGAACCGAAATATATGGGCTCAAAGATGACAGTTTGGGTGGCGTTGTATTAGAAATAAAGTTTGCAGTAGTTTTGGATTTTCCGAATTCGAACAAAAAATAGACAAACAATCCCAAACACTCACTTCTCCTCAGACATTGTTCCTCGATGTAGTTAAATTGAAAAAAGAGAAAATATGCGTAGATTCGAAAATTGAAATCGTGGAAAAAATTTCGGAGATTAGCAAAGTTTTTGGATTTTTATATAATATTTTTCACGTGATACCCTAGTTTCTAGTATGCTAAAAAGCATGGCTATTCAAAATGACGGCAGGCAGGCTCCATTTTTTTACTCAATTTTATTTTTTTTTTCGCGTTGCATTTTCCTATTTTAAAAGTTTGGGTGACCTGGTTTATTTTTTTACGGACCCTTAAATAAATATTTTCATTTTATACCGTAAAACCTGTATTAGAAGAGCCCCC</canonical>
            <polymorphic>TCCATCTTTTTCCGATTTTCCCAAAGTCGATTCGTATGCTTCTTTTTTGGCAAAAATCTTTTTCATAATTTTAACCATCAGTTTGTATTTGAATTTGTCGTCATGCTGAAAAAATGAAAAACTTGTTATATATTTAATCTATGAAAAAAGCAGTACCTTCGGTCCCTTATGTTTATTCCTCCCATTCCCTTTTTTCTTCTTCTTCAAATCTGCCGCAAAAACGTGTATTTCGTTGGTTGGATCCCATTTTTTCAACGAATCCATCGCTAATTCATCAGCGGAATAAATACATAATTTTCCGTCGTTCGTGAATGTATGGACCACGTAGTTTGTACCATCCGGCTTATCCAAGGATAGCATATATCTTCTGAAAATCAGAATACCGTAAACAACTCTAATAGAACGCCACCAGGCTCGTCAAATTTGAACCAATGTATCTCAATTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACAAAATATGTATCATAATATCAGYAACGTTTTATCAGTTAACCACTTTTTGATGTCTTTCATAAGAACCGAAATATATGGGCTCAAAGATGACAGTTTGGGTGGCGTTGTATTAGAAATAAAGTTTGCAGTAGTTTTGGATTTTCCGAATTCGAACAAAAAATAGACAAACAATCCCAAACACTCACTTCTCCTCAGACATTGTTCCTCGATGTAGTTAAATTGAAAAAAGAGAAAATATGCGTAGATTCGAAAATTGAAATCGTGGAAAAAATTTCGGAGATTAGCAAAGTTTTTGGATTTTTATATAATATTTTTCACGTGATACCCTAGTTTCTAGTATGCTAAAAAGCATGGCTATTCAAAATGACGGCAGGCAGGCTCCATTTTTTTACTCAATTTTATTTTTTTTTTCGCGTTGCATTTTCCTATTTTAAAAGTTTGGGTGACCTGGTTTATTTTTTTACGGACCCTTAAATAAATATTTTCATTTTATACCGTAAAACCTGTATTAGAAGAGCCCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>498 422 80</canonical_bands>
                <polymorphic_bands>920 80</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGGATAGCATATATCTTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>CCAAAACTACTGCAAACTTTATT</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>CAAGGATAGCATATATCTTCTGAAAATCAGAATACCGTAAACAACTCTAATAGAACGCCACCAGGCTCGTCAAATTTGAACCAATGTATCTCAATTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACAAAATATGTATCATAATATCAGTAACGTTTTATCAGTTAACCACTTTTTGATGTCTTTCATAAGAACCGAAATATATGGGCTCAAAGATGACAGTTTGGGTGGCGTTGTATTAGAAATAAAGTTTGCAGTAGTTTTGG</canonical_amplicon>
		<polymorphic_amplicon>CAAGGATAGCATATATCTTCTGAAAATCAGAATACCGTAAACAACTCTAATAGAACGCCACCAGGCTCGTCAAATTTGAACCAATGTATCTCAATTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACAAAATATGTATCATAATATCAGYAACGTTTTATCAGTTAACCACTTTTTGATGTCTTTCATAAGAACCGAAATATATGGGCTCAAAGATGACAGTTTGGGTGGCGTTGTATTAGAAATAAAGTTTGCAGTAGTTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30875</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>101516</contig_pos>
        <strand></strand>
        <context>actttttgat[G/A]tctttcataa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATATGTATCATAATATCAGTAACGTTTTATCAGTTAACCACTTTTTGAT</left_flank>
        <right_flank>TCTTTCATAAGAACCGAAATATATGGGCTCAAAGATGACAGTTTGGGTGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGTATGCTTCTTTTTTGGCAAAAATCTTTTTCATAATTTTAACCATCAGTTTGTATTTGAATTTGTCGTCATGCTGAAAAAATGAAAAACTTGTTATATATTTAATCTATGAAAAAAGCAGTACCTTCGGTCCCTTATGTTTATTCCTCCCATTCCCTTTTTTCTTCTTCTTCAAATCTGCCGCAAAAACGTGTATTTCGTTGGTTGGATCCCATTTTTTCAACGAATCCATCGCTAATTCATCAGCGGAATAAATACATAATTTTCCGTCGTTCGTGAATGTATGGACCACGTAGTTTGTACCATCCGGCTTATCCAAGGATAGCATATATCTTCTGAAAATCAGAATACCGTAAACAACTCTAATAGAACGCCACCAGGCTCGTCAAATTTGAACCAATGTATCTCAATTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACAAAATATGTATCATAATATCAGTAACGTTTTATCAGTTAACCACTTTTTGATGTCTTTCATAAGAACCGAAATATATGGGCTCAAAGATGACAGTTTGGGTGGCGTTGTATTAGAAATAAAGTTTGCAGTAGTTTTGGATTTTCCGAATTCGAACAAAAAATAGACAAACAATCCCAAACACTCACTTCTCCTCAGACATTGTTCCTCGATGTAGTTAAATTGAAAAAAGAGAAAATATGCGTAGATTCGAAAATTGAAATCGTGGAAAAAATTTCGGAGATTAGCAAAGTTTTTGGATTTTTATATAATATTTTTCACGTGATACCCTAGTTTCTAGTATGCTAAAAAGCATGGCTATTCAAAATGACGGCAGGCAGGCTCCATTTTTTTACTCAATTTTATTTTTTTTTTCGCGTTGCATTTTCCTATTTTAAAAGTTTGGGTGACCTGGTTTATTTTTTTACGGACCCTTAAATAAATATTTTCATTTTATACCGTAAAACCTGTATTAGAAGAGCCCCCTTTAATAGAAGGGCCCCTTTAATAGAAGTG</canonical>
            <polymorphic>TTCGTATGCTTCTTTTTTGGCAAAAATCTTTTTCATAATTTTAACCATCAGTTTGTATTTGAATTTGTCGTCATGCTGAAAAAATGAAAAACTTGTTATATATTTAATCTATGAAAAAAGCAGTACCTTCGGTCCCTTATGTTTATTCCTCCCATTCCCTTTTTTCTTCTTCTTCAAATCTGCCGCAAAAACGTGTATTTCGTTGGTTGGATCCCATTTTTTCAACGAATCCATCGCTAATTCATCAGCGGAATAAATACATAATTTTCCGTCGTTCGTGAATGTATGGACCACGTAGTTTGTACCATCCGGCTTATCCAAGGATAGCATATATCTTCTGAAAATCAGAATACCGTAAACAACTCTAATAGAACGCCACCAGGCTCGTCAAATTTGAACCAATGTATCTCAATTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACAAAATATGTATCATAATATCAGTAACGTTTTATCAGTTAACCACTTTTTGATRTCTTTCATAAGAACCGAAATATATGGGCTCAAAGATGACAGTTTGGGTGGCGTTGTATTAGAAATAAAGTTTGCAGTAGTTTTGGATTTTCCGAATTCGAACAAAAAATAGACAAACAATCCCAAACACTCACTTCTCCTCAGACATTGTTCCTCGATGTAGTTAAATTGAAAAAAGAGAAAATATGCGTAGATTCGAAAATTGAAATCGTGGAAAAAATTTCGGAGATTAGCAAAGTTTTTGGATTTTTATATAATATTTTTCACGTGATACCCTAGTTTCTAGTATGCTAAAAAGCATGGCTATTCAAAATGACGGCAGGCAGGCTCCATTTTTTTACTCAATTTTATTTTTTTTTTCGCGTTGCATTTTCCTATTTTAAAAGTTTGGGTGACCTGGTTTATTTTTTTACGGACCCTTAAATAAATATTTTCATTTTATACCGTAAAACCTGTATTAGAAGAGCCCCCTTTAATAGAAGGGCCCCTTTAATAGAAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGGATAGCATATATCTTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>CCAAAACTACTGCAAACTTTATT</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>CAAGGATAGCATATATCTTCTGAAAATCAGAATACCGTAAACAACTCTAATAGAACGCCACCAGGCTCGTCAAATTTGAACCAATGTATCTCAATTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACAAAATATGTATCATAATATCAGTAACGTTTTATCAGTTAACCACTTTTTGATGTCTTTCATAAGAACCGAAATATATGGGCTCAAAGATGACAGTTTGGGTGGCGTTGTATTAGAAATAAAGTTTGCAGTAGTTTTGG</canonical_amplicon>
		<polymorphic_amplicon>CAAGGATAGCATATATCTTCTGAAAATCAGAATACCGTAAACAACTCTAATAGAACGCCACCAGGCTCGTCAAATTTGAACCAATGTATCTCAATTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACAAAATATGTATCATAATATCAGTAACGTTTTATCAGTTAACCACTTTTTGATRTCTTTCATAAGAACCGAAATATATGGGCTCAAAGATGACAGTTTGGGTGGCGTTGTATTAGAAATAAAGTTTGCAGTAGTTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30876</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>101847</contig_pos>
        <strand>+</strand>
        <context>GGCAGGCTCC[A/G]TTTTTTTACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTAGTATGCTAAAAAGCATGGCTATTCAAAATGACGGCAGGCAGGCTCC</left_flank>
        <right_flank>TTTTTTTACTCAATTTTATTTTTTTTTTCGCGTTGCATTTTCCTATTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCTTCTGAAAATCAGAATACCGTAAACAACTCTAATAGAACGCCACCAGGCTCGTCAAATTTGAACCAATGTATCTCAATTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACAAAATATGTATCATAATATCAGTAACGTTTTATCAGTTAACCACTTTTTGATGTCTTTCATAAGAACCGAAATATATGGGCTCAAAGATGACAGTTTGGGTGGCGTTGTATTAGAAATAAAGTTTGCAGTAGTTTTGGATTTTCCGAATTCGAACAAAAAATAGACAAACAATCCCAAACACTCACTTCTCCTCAGACATTGTTCCTCGATGTAGTTAAATTGAAAAAAGAGAAAATATGCGTAGATTCGAAAATTGAAATCGTGGAAAAAATTTCGGAGATTAGCAAAGTTTTTGGATTTTTATATAATATTTTTCACGTGATACCCTAGTTTCTAGTATGCTAAAAAGCATGGCTATTCAAAATGACGGCAGGCAGGCTCCATTTTTTTACTCAATTTTATTTTTTTTTTCGCGTTGCATTTTCCTATTTTAAAAGTTTGGGTGACCTGGTTTATTTTTTTACGGACCCTTAAATAAATATTTTCATTTTATACCGTAAAACCTGTATTAGAAGAGCCCCCTTTAATAGAAGGGCCCCTTTAATAGAAGTGTTAACCCAGGGGGACTTGGAAAAATAGAAGGACCCCCTGTAATAGAAGGGCCCTTTGTGATAAAGGACTACCCTTTAAAATGTATTTTGAAATCAGGAAATTTCCATACTTTTCCGGTGAAAAATATTCCAGGAACTCCACAATTTATTAGAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCAGATCTTCATGAATTTTGAACGAAACTTCGTCTTATATATTCGATGCAAATTTCGGAAAAACTGTCAGGAAAAATAAAAGGGCCCCCTCTAATTGAAGGGCCCCCGTCATAGAAGGGCCCTC</canonical>
            <polymorphic>TATCTTCTGAAAATCAGAATACCGTAAACAACTCTAATAGAACGCCACCAGGCTCGTCAAATTTGAACCAATGTATCTCAATTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACAAAATATGTATCATAATATCAGTAACGTTTTATCAGTTAACCACTTTTTGATGTCTTTCATAAGAACCGAAATATATGGGCTCAAAGATGACAGTTTGGGTGGCGTTGTATTAGAAATAAAGTTTGCAGTAGTTTTGGATTTTCCGAATTCGAACAAAAAATAGACAAACAATCCCAAACACTCACTTCTCCTCAGACATTGTTCCTCGATGTAGTTAAATTGAAAAAAGAGAAAATATGCGTAGATTCGAAAATTGAAATCGTGGAAAAAATTTCGGAGATTAGCAAAGTTTTTGGATTTTTATATAATATTTTTCACGTGATACCCTAGTTTCTAGTATGCTAAAAAGCATGGCTATTCAAAATGACGGCAGGCAGGCTCCRTTTTTTTACTCAATTTTATTTTTTTTTTCGCGTTGCATTTTCCTATTTTAAAAGTTTGGGTGACCTGGTTTATTTTTTTACGGACCCTTAAATAAATATTTTCATTTTATACCGTAAAACCTGTATTAGAAGAGCCCCCTTTAATAGAAGGGCCCCTTTAATAGAAGTGTTAACCCAGGGGGACTTGGAAAAATAGAAGGACCCCCTGTAATAGAAGGGCCCTTTGTGATAAAGGACTACCCTTTAAAATGTATTTTGAAATCAGGAAATTTCCATACTTTTCCGGTGAAAAATATTCCAGGAACTCCACAATTTATTAGAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCAGATCTTCATGAATTTTGAACGAAACTTCGTCTTATATATTCGATGCAAATTTCGGAAAAACTGTCAGGAAAAATAAAAGGGCCCCCTCTAATTGAAGGGCCCCCGTCATAGAAGGGCCCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGACATTGTTCCTCGATGTAGT</pcr_primer_p1>
		<pcr_primer_p2>CCAAACTTTTAAAATAGGAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGACATTGTTCCTCGATGTAGTTAAATTGAAAAAAGAGAAAATATGCGTAGATTCGAAAATTGAAATCGTGGAAAAAATTTCGGAGATTAGCAAAGTTTTTGGATTTTTATATAATATTTTTCACGTGATACCCTAGTTTCTAGTATGCTAAAAAGCATGGCTATTCAAAATGACGGCAGGCAGGCTCCATTTTTTTACTCAATTTTATTTTTTTTTTCGCGTTGCATTTTCCTATTTTAAAAGTTTGG</canonical_amplicon>
		<polymorphic_amplicon>AGACATTGTTCCTCGATGTAGTTAAATTGAAAAAAGAGAAAATATGCGTAGATTCGAAAATTGAAATCGTGGAAAAAATTTCGGAGATTAGCAAAGTTTTTGGATTTTTATATAATATTTTTCACGTGATACCCTAGTTTCTAGTATGCTAAAAAGCATGGCTATTCAAAATGACGGCAGGCAGGCTCCRTTTTTTTACTCAATTTTATTTTTTTTTTCGCGTTGCATTTTCCTATTTTAAAAGTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30877</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>101882</contig_pos>
        <strand></strand>
        <context>TTTTCGCGTT[G/A]CATTTTCCTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGGCAGGCAGGCTCCATTTTTTTACTCAATTTTATTTTTTTTTTCGCGTT</left_flank>
        <right_flank>CATTTTCCTATTTTAAAAGTTTGGGTGACCTGGTTTATTTTTTTACGGAC</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAGAACGCCACCAGGCTCGTCAAATTTGAACCAATGTATCTCAATTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACAAAATATGTATCATAATATCAGTAACGTTTTATCAGTTAACCACTTTTTGATGTCTTTCATAAGAACCGAAATATATGGGCTCAAAGATGACAGTTTGGGTGGCGTTGTATTAGAAATAAAGTTTGCAGTAGTTTTGGATTTTCCGAATTCGAACAAAAAATAGACAAACAATCCCAAACACTCACTTCTCCTCAGACATTGTTCCTCGATGTAGTTAAATTGAAAAAAGAGAAAATATGCGTAGATTCGAAAATTGAAATCGTGGAAAAAATTTCGGAGATTAGCAAAGTTTTTGGATTTTTATATAATATTTTTCACGTGATACCCTAGTTTCTAGTATGCTAAAAAGCATGGCTATTCAAAATGACGGCAGGCAGGCTCCATTTTTTTACTCAATTTTATTTTTTTTTTCGCGTTGCATTTTCCTATTTTAAAAGTTTGGGTGACCTGGTTTATTTTTTTACGGACCCTTAAATAAATATTTTCATTTTATACCGTAAAACCTGTATTAGAAGAGCCCCCTTTAATAGAAGGGCCCCTTTAATAGAAGTGTTAACCCAGGGGGACTTGGAAAAATAGAAGGACCCCCTGTAATAGAAGGGCCCTTTGTGATAAAGGACTACCCTTTAAAATGTATTTTGAAATCAGGAAATTTCCATACTTTTCCGGTGAAAAATATTCCAGGAACTCCACAATTTATTAGAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCAGATCTTCATGAATTTTGAACGAAACTTCGTCTTATATATTCGATGCAAATTTCGGAAAAACTGTCAGGAAAAATAAAAGGGCCCCCTCTAATTGAAGGGCCCCCGTCATAGAAGGGCCCTCCAGAGGTAACATCAAACAATAGAAGGGCCGGCCCT</canonical>
            <polymorphic>AATAGAACGCCACCAGGCTCGTCAAATTTGAACCAATGTATCTCAATTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACAAAATATGTATCATAATATCAGTAACGTTTTATCAGTTAACCACTTTTTGATGTCTTTCATAAGAACCGAAATATATGGGCTCAAAGATGACAGTTTGGGTGGCGTTGTATTAGAAATAAAGTTTGCAGTAGTTTTGGATTTTCCGAATTCGAACAAAAAATAGACAAACAATCCCAAACACTCACTTCTCCTCAGACATTGTTCCTCGATGTAGTTAAATTGAAAAAAGAGAAAATATGCGTAGATTCGAAAATTGAAATCGTGGAAAAAATTTCGGAGATTAGCAAAGTTTTTGGATTTTTATATAATATTTTTCACGTGATACCCTAGTTTCTAGTATGCTAAAAAGCATGGCTATTCAAAATGACGGCAGGCAGGCTCCATTTTTTTACTCAATTTTATTTTTTTTTTCGCGTTRCATTTTCCTATTTTAAAAGTTTGGGTGACCTGGTTTATTTTTTTACGGACCCTTAAATAAATATTTTCATTTTATACCGTAAAACCTGTATTAGAAGAGCCCCCTTTAATAGAAGGGCCCCTTTAATAGAAGTGTTAACCCAGGGGGACTTGGAAAAATAGAAGGACCCCCTGTAATAGAAGGGCCCTTTGTGATAAAGGACTACCCTTTAAAATGTATTTTGAAATCAGGAAATTTCCATACTTTTCCGGTGAAAAATATTCCAGGAACTCCACAATTTATTAGAAATTTGTTGAAACTCTATTTTTCGATGAAAATCTTGCTAAATTTTGGTGAAATTGGCAGATCTTCATGAATTTTGAACGAAACTTCGTCTTATATATTCGATGCAAATTTCGGAAAAACTGTCAGGAAAAATAAAAGGGCCCCCTCTAATTGAAGGGCCCCCGTCATAGAAGGGCCCTCCAGAGGTAACATCAAACAATAGAAGGGCCGGCCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>389 293 207 111</canonical_bands>
                <polymorphic_bands>682 207 111</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCATGGCTATTCAAAATGAC</pcr_primer_p1>
		<pcr_primer_p2>TAAAGGGTAGTCCTTTATCACAA</pcr_primer_p2>
		<pcr_amplicon_size>281</pcr_amplicon_size>
		<canonical_amplicon>GCATGGCTATTCAAAATGACGGCAGGCAGGCTCCATTTTTTTACTCAATTTTATTTTTTTTTTCGCGTTGCATTTTCCTATTTTAAAAGTTTGGGTGACCTGGTTTATTTTTTTACGGACCCTTAAATAAATATTTTCATTTTATACCGTAAAACCTGTATTAGAAGAGCCCCCTTTAATAGAAGGGCCCCTTTAATAGAAGTGTTAACCCAGGGGGACTTGGAAAAATAGAAGGACCCCCTGTAATAGAAGGGCCCTTTGTGATAAAGGACTACCCTTTA</canonical_amplicon>
		<polymorphic_amplicon>GCATGGCTATTCAAAATGACGGCAGGCAGGCTCCATTTTTTTACTCAATTTTATTTTTTTTTTCGCGTTRCATTTTCCTATTTTAAAAGTTTGGGTGACCTGGTTTATTTTTTTACGGACCCTTAAATAAATATTTTCATTTTATACCGTAAAACCTGTATTAGAAGAGCCCCCTTTAATAGAAGGGCCCCTTTAATAGAAGTGTTAACCCAGGGGGACTTGGAAAAATAGAAGGACCCCCTGTAATAGAAGGGCCCTTTGTGATAAAGGACTACCCTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30878</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>106164</contig_pos>
        <strand>+</strand>
        <context>GAAAAAAAAA[C/T]TTGGGTTCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAAGTGCTATGTCTTTGTCTTTGAAGTTATTGCCTTTCTGAAAAAAAAA</left_flank>
        <right_flank>TTGGGTTCAGATATTGCAATTTTGCAAAAAAGAATCCTGAAAAGTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACCACAAAAAAATTATCGAGTTTTCAAACAAAAATTTCTTTGAAATGACCATTGATGACCTCAAAAATTGGAGCACCATAAAAGCAGATGACGGGAATGTAGATTGGAGCAAGAATCAGAAGAACGAAAAAAAGTGTAATCCAGTGTTTGTTGTTTCGATTCGGTTGACACTTCATTAGTTTCGCTTCAAGTTTGATAATTTCTTCTTTCCTTCTTTCAGCCGATTCACGCTCTTCGTTTTGGCCCAACACATTTCGCACAAGTGGCATAAAAATTTCCTTTACGAATTCTTTTTCTCGTTCAAGATCTTCGTCAACGGTTGGCATGGTTTTTGGTTCAGCCGATTCTTTTTTCTGTGGAGCCGAATTTTTGTGCACTGTGTTTCTTTTAGCAGCCAGATTCGATTCGTACGCCTCTTTTTTGTCCAACAACTTTTTCACAACCGTACCAAGTGCTATGTCTTTGTCTTTGAAGTTATTGCCTTTCTGAAAAAAAAAATTGGGTTCAGATATTGCAATTTTGCAAAAAAGAATCCTGAAAAGTTTTTTCGAAATTCCAAATTTTACAAAAAACGAAAAAAAAAAGATTTTTTTTGGATTCGTCAGACATTCAAACATTTCTAGCAAAATCAGAAAAAAATTCAAACTTCAGGATTAGGTAACTCAAACTTCCCAAAAGATCAATAAAGTACCTTCGCTCCCATTTTTCGGTTCCTTCCACTCCTATTTTTCCTCTTATTCAAATCCCTCGGGAAAATATGTACTTCATTGGCTGGATCCCATTTTTTCAGCGTCTCTTTTGCCACGTCAGGAGCATCATGAATACACATTTTTCCGTCGTCAGTAACCATAAAAGCAACGTCCTTATCGCTCACTTGCATGACATACAAACTGAAATTTGTCCGATGTTTTCTCCTCTAGAGCTGCTGAGATTTCAAGAATTCTTAATTCTTGGAAACTAAGAAATTAGGGAAAATTAAGAAACCCAGAAATTTTGGA</canonical>
            <polymorphic>AAACCACAAAAAAATTATCGAGTTTTCAAACAAAAATTTCTTTGAAATGACCATTGATGACCTCAAAAATTGGAGCACCATAAAAGCAGATGACGGGAATGTAGATTGGAGCAAGAATCAGAAGAACGAAAAAAAGTGTAATCCAGTGTTTGTTGTTTCGATTCGGTTGACACTTCATTAGTTTCGCTTCAAGTTTGATAATTTCTTCTTTCCTTCTTTCAGCCGATTCACGCTCTTCGTTTTGGCCCAACACATTTCGCACAAGTGGCATAAAAATTTCCTTTACGAATTCTTTTTCTCGTTCAAGATCTTCGTCAACGGTTGGCATGGTTTTTGGTTCAGCCGATTCTTTTTTCTGTGGAGCCGAATTTTTGTGCACTGTGTTTCTTTTAGCAGCCAGATTCGATTCGTACGCCTCTTTTTTGTCCAACAACTTTTTCACAACCGTACCAAGTGCTATGTCTTTGTCTTTGAAGTTATTGCCTTTCTGAAAAAAAAAYTTGGGTTCAGATATTGCAATTTTGCAAAAAAGAATCCTGAAAAGTTTTTTCGAAATTCCAAATTTTACAAAAAACGAAAAAAAAAAGATTTTTTTTGGATTCGTCAGACATTCAAACATTTCTAGCAAAATCAGAAAAAAATTCAAACTTCAGGATTAGGTAACTCAAACTTCCCAAAAGATCAATAAAGTACCTTCGCTCCCATTTTTCGGTTCCTTCCACTCCTATTTTTCCTCTTATTCAAATCCCTCGGGAAAATATGTACTTCATTGGCTGGATCCCATTTTTTCAGCGTCTCTTTTGCCACGTCAGGAGCATCATGAATACACATTTTTCCGTCGTCAGTAACCATAAAAGCAACGTCCTTATCGCTCACTTGCATGACATACAAACTGAAATTTGTCCGATGTTTTCTCCTCTAGAGCTGCTGAGATTTCAAGAATTCTTAATTCTTGGAAACTAAGAAATTAGGGAAAATTAAGAAACCCAGAAATTTTGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>257 132 132 79 79 75 44 36 33 22 19 18 16 13 12 10 9 7 7</canonical_bands>
                <polymorphic_bands>257 151 132 79 79 75 44 36 33 22 18 16 13 12 10 9 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTACCAAGTGCTATGTCTTTGTC</pcr_primer_p1>
		<pcr_primer_p2>ACTTTATTGATCTTTTGGGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GTACCAAGTGCTATGTCTTTGTCTTTGAAGTTATTGCCTTTCTGAAAAAAAAAATTGGGTTCAGATATTGCAATTTTGCAAAAAAGAATCCTGAAAAGTTTTTTCGAAATTCCAAATTTTACAAAAAACGAAAAAAAAAAGATTTTTTTTGGATTCGTCAGACATTCAAACATTTCTAGCAAAATCAGAAAAAAATTCAAACTTCAGGATTAGGTAACTCAAACTTCCCAAAAGATCAATAAAGT</canonical_amplicon>
		<polymorphic_amplicon>GTACCAAGTGCTATGTCTTTGTCTTTGAAGTTATTGCCTTTCTGAAAAAAAAAYTTGGGTTCAGATATTGCAATTTTGCAAAAAAGAATCCTGAAAAGTTTTTTCGAAATTCCAAATTTTACAAAAAACGAAAAAAAAAAGATTTTTTTTGGATTCGTCAGACATTCAAACATTTCTAGCAAAATCAGAAAAAAATTCAAACTTCAGGATTAGGTAACTCAAACTTCCCAAAAGATCAATAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30879</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>106200</contig_pos>
        <strand></strand>
        <context>AAAAAAGAAT[C/T]CTGAAAAGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTGAAAAAAAAAATTGGGTTCAGATATTGCAATTTTGCAAAAAAGAAT</left_flank>
        <right_flank>CTGAAAAGTTTTTTCGAAATTCCAAATTTTACAAAAAACGAAAAAAAAAA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTTTGAAATGACCATTGATGACCTCAAAAATTGGAGCACCATAAAAGCAGATGACGGGAATGTAGATTGGAGCAAGAATCAGAAGAACGAAAAAAAGTGTAATCCAGTGTTTGTTGTTTCGATTCGGTTGACACTTCATTAGTTTCGCTTCAAGTTTGATAATTTCTTCTTTCCTTCTTTCAGCCGATTCACGCTCTTCGTTTTGGCCCAACACATTTCGCACAAGTGGCATAAAAATTTCCTTTACGAATTCTTTTTCTCGTTCAAGATCTTCGTCAACGGTTGGCATGGTTTTTGGTTCAGCCGATTCTTTTTTCTGTGGAGCCGAATTTTTGTGCACTGTGTTTCTTTTAGCAGCCAGATTCGATTCGTACGCCTCTTTTTTGTCCAACAACTTTTTCACAACCGTACCAAGTGCTATGTCTTTGTCTTTGAAGTTATTGCCTTTCTGAAAAAAAAAATTGGGTTCAGATATTGCAATTTTGCAAAAAAGAATCCTGAAAAGTTTTTTCGAAATTCCAAATTTTACAAAAAACGAAAAAAAAAAGATTTTTTTTGGATTCGTCAGACATTCAAACATTTCTAGCAAAATCAGAAAAAAATTCAAACTTCAGGATTAGGTAACTCAAACTTCCCAAAAGATCAATAAAGTACCTTCGCTCCCATTTTTCGGTTCCTTCCACTCCTATTTTTCCTCTTATTCAAATCCCTCGGGAAAATATGTACTTCATTGGCTGGATCCCATTTTTTCAGCGTCTCTTTTGCCACGTCAGGAGCATCATGAATACACATTTTTCCGTCGTCAGTAACCATAAAAGCAACGTCCTTATCGCTCACTTGCATGACATACAAACTGAAATTTGTCCGATGTTTTCTCCTCTAGAGCTGCTGAGATTTCAAGAATTCTTAATTCTTGGAAACTAAGAAATTAGGGAAAATTAAGAAACCCAGAAATTTTGGAGATTTTCAAAATTCGTCGAAAACCTCAAAAAAATAC</canonical>
            <polymorphic>TTTCTTTGAAATGACCATTGATGACCTCAAAAATTGGAGCACCATAAAAGCAGATGACGGGAATGTAGATTGGAGCAAGAATCAGAAGAACGAAAAAAAGTGTAATCCAGTGTTTGTTGTTTCGATTCGGTTGACACTTCATTAGTTTCGCTTCAAGTTTGATAATTTCTTCTTTCCTTCTTTCAGCCGATTCACGCTCTTCGTTTTGGCCCAACACATTTCGCACAAGTGGCATAAAAATTTCCTTTACGAATTCTTTTTCTCGTTCAAGATCTTCGTCAACGGTTGGCATGGTTTTTGGTTCAGCCGATTCTTTTTTCTGTGGAGCCGAATTTTTGTGCACTGTGTTTCTTTTAGCAGCCAGATTCGATTCGTACGCCTCTTTTTTGTCCAACAACTTTTTCACAACCGTACCAAGTGCTATGTCTTTGTCTTTGAAGTTATTGCCTTTCTGAAAAAAAAAATTGGGTTCAGATATTGCAATTTTGCAAAAAAGAATYCTGAAAAGTTTTTTCGAAATTCCAAATTTTACAAAAAACGAAAAAAAAAAGATTTTTTTTGGATTCGTCAGACATTCAAACATTTCTAGCAAAATCAGAAAAAAATTCAAACTTCAGGATTAGGTAACTCAAACTTCCCAAAAGATCAATAAAGTACCTTCGCTCCCATTTTTCGGTTCCTTCCACTCCTATTTTTCCTCTTATTCAAATCCCTCGGGAAAATATGTACTTCATTGGCTGGATCCCATTTTTTCAGCGTCTCTTTTGCCACGTCAGGAGCATCATGAATACACATTTTTCCGTCGTCAGTAACCATAAAAGCAACGTCCTTATCGCTCACTTGCATGACATACAAACTGAAATTTGTCCGATGTTTTCTCCTCTAGAGCTGCTGAGATTTCAAGAATTCTTAATTCTTGGAAACTAAGAAATTAGGGAAAATTAAGAAACCCAGAAATTTTGGAGATTTTCAAAATTCGTCGAAAACCTCAAAAAAATAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>438 127 120 79 66 65 55 45 5</canonical_bands>
                <polymorphic_bands>438 193 120 79 65 55 45 5</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>268 232 115 100 100 99 59 18 9</canonical_bands>
                <polymorphic_bands>347 268 100 100 99 59 18 9</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>438 127 120 79 66 65 55 45 5</canonical_bands>
                <polymorphic_bands>438 193 120 79 65 55 45 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTGCTATGTCTTTGTCTTTGA</pcr_primer_p1>
		<pcr_primer_p2>AGCGAAGGTACTTTATTGATCTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGTGCTATGTCTTTGTCTTTGAAGTTATTGCCTTTCTGAAAAAAAAAATTGGGTTCAGATATTGCAATTTTGCAAAAAAGAATCCTGAAAAGTTTTTTCGAAATTCCAAATTTTACAAAAAACGAAAAAAAAAAGATTTTTTTTGGATTCGTCAGACATTCAAACATTTCTAGCAAAATCAGAAAAAAATTCAAACTTCAGGATTAGGTAACTCAAACTTCCCAAAAGATCAATAAAGTACCTTCGCT</canonical_amplicon>
		<polymorphic_amplicon>AAGTGCTATGTCTTTGTCTTTGAAGTTATTGCCTTTCTGAAAAAAAAAATTGGGTTCAGATATTGCAATTTTGCAAAAAAGAATYCTGAAAAGTTTTTTCGAAATTCCAAATTTTACAAAAAACGAAAAAAAAAAGATTTTTTTTGGATTCGTCAGACATTCAAACATTTCTAGCAAAATCAGAAAAAAATTCAAACTTCAGGATTAGGTAACTCAAACTTCCCAAAAGATCAATAAAGTACCTTCGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30880</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>106566</contig_pos>
        <strand>+</strand>
        <context>ACTGAAATTT[G/T]TCCGATGTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAAAAGCAACGTCCTTATCGCTCACTTGCATGACATACAAACTGAAATTT</left_flank>
        <right_flank>TCCGATGTTTTCTCCTCTAGAGCTGCTGAGATTTCAAGAATTCTTAATTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGATTCGTACGCCTCTTTTTTGTCCAACAACTTTTTCACAACCGTACCAAGTGCTATGTCTTTGTCTTTGAAGTTATTGCCTTTCTGAAAAAAAAAATTGGGTTCAGATATTGCAATTTTGCAAAAAAGAATCCTGAAAAGTTTTTTCGAAATTCCAAATTTTACAAAAAACGAAAAAAAAAAGATTTTTTTTGGATTCGTCAGACATTCAAACATTTCTAGCAAAATCAGAAAAAAATTCAAACTTCAGGATTAGGTAACTCAAACTTCCCAAAAGATCAATAAAGTACCTTCGCTCCCATTTTTCGGTTCCTTCCACTCCTATTTTTCCTCTTATTCAAATCCCTCGGGAAAATATGTACTTCATTGGCTGGATCCCATTTTTTCAGCGTCTCTTTTGCCACGTCAGGAGCATCATGAATACACATTTTTCCGTCGTCAGTAACCATAAAAGCAACGTCCTTATCGCTCACTTGCATGACATACAAACTGAAATTTGTCCGATGTTTTCTCCTCTAGAGCTGCTGAGATTTCAAGAATTCTTAATTCTTGGAAACTAAGAAATTAGGGAAAATTAAGAAACCCAGAAATTTTGGAGATTTTCAAAATTCGTCGAAAACCTCAAAAAAATACTCACTCCACAACACCCATTGTTCTCCTTGTTGTTCTTGAATTGACTGTAAAGAGAGAACTCTGAGAAATATATTTTCGAAAATTCGAAAATCGAAAACTTCGTGGATTTCATAATTTCAGTGGCAATCTGGCGGCAACCGGCTAAATCTCAATTTTCTGAAATTTTTCGGAAGTCAAATTCTTCCTAAAATTTTTTTTTGAAAAAAATCCCACAACTCACAATTTAGGGTGCAATTTAGGGTGGCGCGTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGGCATATTCCGATGTACCCATGGCGATTTTCCGCGAACAATATTTCACCTATTATAGACGCTGCGCGAATCACCTGTGTCTGTGTGC</canonical>
            <polymorphic>TCGATTCGTACGCCTCTTTTTTGTCCAACAACTTTTTCACAACCGTACCAAGTGCTATGTCTTTGTCTTTGAAGTTATTGCCTTTCTGAAAAAAAAAATTGGGTTCAGATATTGCAATTTTGCAAAAAAGAATCCTGAAAAGTTTTTTCGAAATTCCAAATTTTACAAAAAACGAAAAAAAAAAGATTTTTTTTGGATTCGTCAGACATTCAAACATTTCTAGCAAAATCAGAAAAAAATTCAAACTTCAGGATTAGGTAACTCAAACTTCCCAAAAGATCAATAAAGTACCTTCGCTCCCATTTTTCGGTTCCTTCCACTCCTATTTTTCCTCTTATTCAAATCCCTCGGGAAAATATGTACTTCATTGGCTGGATCCCATTTTTTCAGCGTCTCTTTTGCCACGTCAGGAGCATCATGAATACACATTTTTCCGTCGTCAGTAACCATAAAAGCAACGTCCTTATCGCTCACTTGCATGACATACAAACTGAAATTTKTCCGATGTTTTCTCCTCTAGAGCTGCTGAGATTTCAAGAATTCTTAATTCTTGGAAACTAAGAAATTAGGGAAAATTAAGAAACCCAGAAATTTTGGAGATTTTCAAAATTCGTCGAAAACCTCAAAAAAATACTCACTCCACAACACCCATTGTTCTCCTTGTTGTTCTTGAATTGACTGTAAAGAGAGAACTCTGAGAAATATATTTTCGAAAATTCGAAAATCGAAAACTTCGTGGATTTCATAATTTCAGTGGCAATCTGGCGGCAACCGGCTAAATCTCAATTTTCTGAAATTTTTCGGAAGTCAAATTCTTCCTAAAATTTTTTTTTGAAAAAAATCCCACAACTCACAATTTAGGGTGCAATTTAGGGTGGCGCGTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGGCATATTCCGATGTACCCATGGCGATTTTCCGCGAACAATATTTCACCTATTATAGACGCTGCGCGAATCACCTGTGTCTGTGTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTCGTCAGTAACCATAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTACAGTCAATTCAAGAACAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTCGTCAGTAACCATAAAAGCAACGTCCTTATCGCTCACTTGCATGACATACAAACTGAAATTTGTCCGATGTTTTCTCCTCTAGAGCTGCTGAGATTTCAAGAATTCTTAATTCTTGGAAACTAAGAAATTAGGGAAAATTAAGAAACCCAGAAATTTTGGAGATTTTCAAAATTCGTCGAAAACCTCAAAAAAATACTCACTCCACAACACCCATTGTTCTCCTTGTTGTTCTTGAATTGACTGTAA</canonical_amplicon>
		<polymorphic_amplicon>CGTCGTCAGTAACCATAAAAGCAACGTCCTTATCGCTCACTTGCATGACATACAAACTGAAATTTKTCCGATGTTTTCTCCTCTAGAGCTGCTGAGATTTCAAGAATTCTTAATTCTTGGAAACTAAGAAATTAGGGAAAATTAAGAAACCCAGAAATTTTGGAGATTTTCAAAATTCGTCGAAAACCTCAAAAAAATACTCACTCCACAACACCCATTGTTCTCCTTGTTGTTCTTGAATTGACTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30881</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>106624</contig_pos>
        <strand>+</strand>
        <context>TTCTTGGAAA[C/T]TAAGAAATTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCTCCTCTAGAGCTGCTGAGATTTCAAGAATTCTTAATTCTTGGAAA</left_flank>
        <right_flank>TAAGAAATTAGGGAAAATTAAGAAACCCAGAAATTTTGGAGATTTTCAAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCTTTGTCTTTGAAGTTATTGCCTTTCTGAAAAAAAAAATTGGGTTCAGATATTGCAATTTTGCAAAAAAGAATCCTGAAAAGTTTTTTCGAAATTCCAAATTTTACAAAAAACGAAAAAAAAAAGATTTTTTTTGGATTCGTCAGACATTCAAACATTTCTAGCAAAATCAGAAAAAAATTCAAACTTCAGGATTAGGTAACTCAAACTTCCCAAAAGATCAATAAAGTACCTTCGCTCCCATTTTTCGGTTCCTTCCACTCCTATTTTTCCTCTTATTCAAATCCCTCGGGAAAATATGTACTTCATTGGCTGGATCCCATTTTTTCAGCGTCTCTTTTGCCACGTCAGGAGCATCATGAATACACATTTTTCCGTCGTCAGTAACCATAAAAGCAACGTCCTTATCGCTCACTTGCATGACATACAAACTGAAATTTGTCCGATGTTTTCTCCTCTAGAGCTGCTGAGATTTCAAGAATTCTTAATTCTTGGAAACTAAGAAATTAGGGAAAATTAAGAAACCCAGAAATTTTGGAGATTTTCAAAATTCGTCGAAAACCTCAAAAAAATACTCACTCCACAACACCCATTGTTCTCCTTGTTGTTCTTGAATTGACTGTAAAGAGAGAACTCTGAGAAATATATTTTCGAAAATTCGAAAATCGAAAACTTCGTGGATTTCATAATTTCAGTGGCAATCTGGCGGCAACCGGCTAAATCTCAATTTTCTGAAATTTTTCGGAAGTCAAATTCTTCCTAAAATTTTTTTTTGAAAAAAATCCCACAACTCACAATTTAGGGTGCAATTTAGGGTGGCGCGTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGGCATATTCCGATGTACCCATGGCGATTTTCCGCGAACAATATTTCACCTATTATAGACGCTGCGCGAATCACCTGTGTCTGTGTGCAATGTCTGTGGTTCGATCCCTCTTGTGGTGTTTTGGTTTTTTTTCCCTTTTCTTCAAT</canonical>
            <polymorphic>GTCTTTGTCTTTGAAGTTATTGCCTTTCTGAAAAAAAAAATTGGGTTCAGATATTGCAATTTTGCAAAAAAGAATCCTGAAAAGTTTTTTCGAAATTCCAAATTTTACAAAAAACGAAAAAAAAAAGATTTTTTTTGGATTCGTCAGACATTCAAACATTTCTAGCAAAATCAGAAAAAAATTCAAACTTCAGGATTAGGTAACTCAAACTTCCCAAAAGATCAATAAAGTACCTTCGCTCCCATTTTTCGGTTCCTTCCACTCCTATTTTTCCTCTTATTCAAATCCCTCGGGAAAATATGTACTTCATTGGCTGGATCCCATTTTTTCAGCGTCTCTTTTGCCACGTCAGGAGCATCATGAATACACATTTTTCCGTCGTCAGTAACCATAAAAGCAACGTCCTTATCGCTCACTTGCATGACATACAAACTGAAATTTGTCCGATGTTTTCTCCTCTAGAGCTGCTGAGATTTCAAGAATTCTTAATTCTTGGAAAYTAAGAAATTAGGGAAAATTAAGAAACCCAGAAATTTTGGAGATTTTCAAAATTCGTCGAAAACCTCAAAAAAATACTCACTCCACAACACCCATTGTTCTCCTTGTTGTTCTTGAATTGACTGTAAAGAGAGAACTCTGAGAAATATATTTTCGAAAATTCGAAAATCGAAAACTTCGTGGATTTCATAATTTCAGTGGCAATCTGGCGGCAACCGGCTAAATCTCAATTTTCTGAAATTTTTCGGAAGTCAAATTCTTCCTAAAATTTTTTTTTGAAAAAAATCCCACAACTCACAATTTAGGGTGCAATTTAGGGTGGCGCGTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGGCATATTCCGATGTACCCATGGCGATTTTCCGCGAACAATATTTCACCTATTATAGACGCTGCGCGAATCACCTGTGTCTGTGTGCAATGTCTGTGGTTCGATCCCTCTTGTGGTGTTTTGGTTTTTTTTCCCTTTTCTTCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>468 363 137 32</canonical_bands>
                <polymorphic_bands>468 363 169</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTCGTCAGTAACCATAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTACAGTCAATTCAAGAACAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTCGTCAGTAACCATAAAAGCAACGTCCTTATCGCTCACTTGCATGACATACAAACTGAAATTTGTCCGATGTTTTCTCCTCTAGAGCTGCTGAGATTTCAAGAATTCTTAATTCTTGGAAACTAAGAAATTAGGGAAAATTAAGAAACCCAGAAATTTTGGAGATTTTCAAAATTCGTCGAAAACCTCAAAAAAATACTCACTCCACAACACCCATTGTTCTCCTTGTTGTTCTTGAATTGACTGTAA</canonical_amplicon>
		<polymorphic_amplicon>CGTCGTCAGTAACCATAAAAGCAACGTCCTTATCGCTCACTTGCATGACATACAAACTGAAATTTGTCCGATGTTTTCTCCTCTAGAGCTGCTGAGATTTCAAGAATTCTTAATTCTTGGAAAYTAAGAAATTAGGGAAAATTAAGAAACCCAGAAATTTTGGAGATTTTCAAAATTCGTCGAAAACCTCAAAAAAATACTCACTCCACAACACCCATTGTTCTCCTTGTTGTTCTTGAATTGACTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30882</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>106637</contig_pos>
        <strand>+</strand>
        <context>AGAAATTAGG[A/G]AAAATTAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCTGCTGAGATTTCAAGAATTCTTAATTCTTGGAAACTAAGAAATTAGG</left_flank>
        <right_flank>AAAATTAAGAAACCCAGAAATTTTGGAGATTTTCAAAATTCGTCGAAAAC</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTATTGCCTTTCTGAAAAAAAAAATTGGGTTCAGATATTGCAATTTTGCAAAAAAGAATCCTGAAAAGTTTTTTCGAAATTCCAAATTTTACAAAAAACGAAAAAAAAAAGATTTTTTTTGGATTCGTCAGACATTCAAACATTTCTAGCAAAATCAGAAAAAAATTCAAACTTCAGGATTAGGTAACTCAAACTTCCCAAAAGATCAATAAAGTACCTTCGCTCCCATTTTTCGGTTCCTTCCACTCCTATTTTTCCTCTTATTCAAATCCCTCGGGAAAATATGTACTTCATTGGCTGGATCCCATTTTTTCAGCGTCTCTTTTGCCACGTCAGGAGCATCATGAATACACATTTTTCCGTCGTCAGTAACCATAAAAGCAACGTCCTTATCGCTCACTTGCATGACATACAAACTGAAATTTGTCCGATGTTTTCTCCTCTAGAGCTGCTGAGATTTCAAGAATTCTTAATTCTTGGAAACTAAGAAATTAGGGAAAATTAAGAAACCCAGAAATTTTGGAGATTTTCAAAATTCGTCGAAAACCTCAAAAAAATACTCACTCCACAACACCCATTGTTCTCCTTGTTGTTCTTGAATTGACTGTAAAGAGAGAACTCTGAGAAATATATTTTCGAAAATTCGAAAATCGAAAACTTCGTGGATTTCATAATTTCAGTGGCAATCTGGCGGCAACCGGCTAAATCTCAATTTTCTGAAATTTTTCGGAAGTCAAATTCTTCCTAAAATTTTTTTTTGAAAAAAATCCCACAACTCACAATTTAGGGTGCAATTTAGGGTGGCGCGTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGGCATATTCCGATGTACCCATGGCGATTTTCCGCGAACAATATTTCACCTATTATAGACGCTGCGCGAATCACCTGTGTCTGTGTGCAATGTCTGTGGTTCGATCCCTCTTGTGGTGTTTTGGTTTTTTTTCCCTTTTCTTCAATGCTCTGACATTCT</canonical>
            <polymorphic>AAGTTATTGCCTTTCTGAAAAAAAAAATTGGGTTCAGATATTGCAATTTTGCAAAAAAGAATCCTGAAAAGTTTTTTCGAAATTCCAAATTTTACAAAAAACGAAAAAAAAAAGATTTTTTTTGGATTCGTCAGACATTCAAACATTTCTAGCAAAATCAGAAAAAAATTCAAACTTCAGGATTAGGTAACTCAAACTTCCCAAAAGATCAATAAAGTACCTTCGCTCCCATTTTTCGGTTCCTTCCACTCCTATTTTTCCTCTTATTCAAATCCCTCGGGAAAATATGTACTTCATTGGCTGGATCCCATTTTTTCAGCGTCTCTTTTGCCACGTCAGGAGCATCATGAATACACATTTTTCCGTCGTCAGTAACCATAAAAGCAACGTCCTTATCGCTCACTTGCATGACATACAAACTGAAATTTGTCCGATGTTTTCTCCTCTAGAGCTGCTGAGATTTCAAGAATTCTTAATTCTTGGAAACTAAGAAATTAGGRAAAATTAAGAAACCCAGAAATTTTGGAGATTTTCAAAATTCGTCGAAAACCTCAAAAAAATACTCACTCCACAACACCCATTGTTCTCCTTGTTGTTCTTGAATTGACTGTAAAGAGAGAACTCTGAGAAATATATTTTCGAAAATTCGAAAATCGAAAACTTCGTGGATTTCATAATTTCAGTGGCAATCTGGCGGCAACCGGCTAAATCTCAATTTTCTGAAATTTTTCGGAAGTCAAATTCTTCCTAAAATTTTTTTTTGAAAAAAATCCCACAACTCACAATTTAGGGTGCAATTTAGGGTGGCGCGTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGGCATATTCCGATGTACCCATGGCGATTTTCCGCGAACAATATTTCACCTATTATAGACGCTGCGCGAATCACCTGTGTCTGTGTGCAATGTCTGTGGTTCGATCCCTCTTGTGGTGTTTTGGTTTTTTTTCCCTTTTCTTCAATGCTCTGACATTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTCGTCAGTAACCATAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTACAGTCAATTCAAGAACAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTCGTCAGTAACCATAAAAGCAACGTCCTTATCGCTCACTTGCATGACATACAAACTGAAATTTGTCCGATGTTTTCTCCTCTAGAGCTGCTGAGATTTCAAGAATTCTTAATTCTTGGAAACTAAGAAATTAGGGAAAATTAAGAAACCCAGAAATTTTGGAGATTTTCAAAATTCGTCGAAAACCTCAAAAAAATACTCACTCCACAACACCCATTGTTCTCCTTGTTGTTCTTGAATTGACTGTAA</canonical_amplicon>
		<polymorphic_amplicon>CGTCGTCAGTAACCATAAAAGCAACGTCCTTATCGCTCACTTGCATGACATACAAACTGAAATTTGTCCGATGTTTTCTCCTCTAGAGCTGCTGAGATTTCAAGAATTCTTAATTCTTGGAAACTAAGAAATTAGGRAAAATTAAGAAACCCAGAAATTTTGGAGATTTTCAAAATTCGTCGAAAACCTCAAAAAAATACTCACTCCACAACACCCATTGTTCTCCTTGTTGTTCTTGAATTGACTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30883</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>106664</contig_pos>
        <strand>+</strand>
        <context>GAAATTTTGG[A/G]GATTTTCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTTGGAAACTAAGAAATTAGGGAAAATTAAGAAACCCAGAAATTTTGG</left_flank>
        <right_flank>GATTTTCAAAATTCGTCGAAAACCTCAAAAAAATACTCACTCCACAACAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGGTTCAGATATTGCAATTTTGCAAAAAAGAATCCTGAAAAGTTTTTTCGAAATTCCAAATTTTACAAAAAACGAAAAAAAAAAGATTTTTTTTGGATTCGTCAGACATTCAAACATTTCTAGCAAAATCAGAAAAAAATTCAAACTTCAGGATTAGGTAACTCAAACTTCCCAAAAGATCAATAAAGTACCTTCGCTCCCATTTTTCGGTTCCTTCCACTCCTATTTTTCCTCTTATTCAAATCCCTCGGGAAAATATGTACTTCATTGGCTGGATCCCATTTTTTCAGCGTCTCTTTTGCCACGTCAGGAGCATCATGAATACACATTTTTCCGTCGTCAGTAACCATAAAAGCAACGTCCTTATCGCTCACTTGCATGACATACAAACTGAAATTTGTCCGATGTTTTCTCCTCTAGAGCTGCTGAGATTTCAAGAATTCTTAATTCTTGGAAACTAAGAAATTAGGGAAAATTAAGAAACCCAGAAATTTTGGAGATTTTCAAAATTCGTCGAAAACCTCAAAAAAATACTCACTCCACAACACCCATTGTTCTCCTTGTTGTTCTTGAATTGACTGTAAAGAGAGAACTCTGAGAAATATATTTTCGAAAATTCGAAAATCGAAAACTTCGTGGATTTCATAATTTCAGTGGCAATCTGGCGGCAACCGGCTAAATCTCAATTTTCTGAAATTTTTCGGAAGTCAAATTCTTCCTAAAATTTTTTTTTGAAAAAAATCCCACAACTCACAATTTAGGGTGCAATTTAGGGTGGCGCGTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGGCATATTCCGATGTACCCATGGCGATTTTCCGCGAACAATATTTCACCTATTATAGACGCTGCGCGAATCACCTGTGTCTGTGTGCAATGTCTGTGGTTCGATCCCTCTTGTGGTGTTTTGGTTTTTTTTCCCTTTTCTTCAATGCTCTGACATTCTGGGGAGTCTTTTTCTATATTTTTAAGG</canonical>
            <polymorphic>TTGGGTTCAGATATTGCAATTTTGCAAAAAAGAATCCTGAAAAGTTTTTTCGAAATTCCAAATTTTACAAAAAACGAAAAAAAAAAGATTTTTTTTGGATTCGTCAGACATTCAAACATTTCTAGCAAAATCAGAAAAAAATTCAAACTTCAGGATTAGGTAACTCAAACTTCCCAAAAGATCAATAAAGTACCTTCGCTCCCATTTTTCGGTTCCTTCCACTCCTATTTTTCCTCTTATTCAAATCCCTCGGGAAAATATGTACTTCATTGGCTGGATCCCATTTTTTCAGCGTCTCTTTTGCCACGTCAGGAGCATCATGAATACACATTTTTCCGTCGTCAGTAACCATAAAAGCAACGTCCTTATCGCTCACTTGCATGACATACAAACTGAAATTTGTCCGATGTTTTCTCCTCTAGAGCTGCTGAGATTTCAAGAATTCTTAATTCTTGGAAACTAAGAAATTAGGGAAAATTAAGAAACCCAGAAATTTTGGRGATTTTCAAAATTCGTCGAAAACCTCAAAAAAATACTCACTCCACAACACCCATTGTTCTCCTTGTTGTTCTTGAATTGACTGTAAAGAGAGAACTCTGAGAAATATATTTTCGAAAATTCGAAAATCGAAAACTTCGTGGATTTCATAATTTCAGTGGCAATCTGGCGGCAACCGGCTAAATCTCAATTTTCTGAAATTTTTCGGAAGTCAAATTCTTCCTAAAATTTTTTTTTGAAAAAAATCCCACAACTCACAATTTAGGGTGCAATTTAGGGTGGCGCGTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGGCATATTCCGATGTACCCATGGCGATTTTCCGCGAACAATATTTCACCTATTATAGACGCTGCGCGAATCACCTGTGTCTGTGTGCAATGTCTGTGGTTCGATCCCTCTTGTGGTGTTTTGGTTTTTTTTCCCTTTTCTTCAATGCTCTGACATTCTGGGGAGTCTTTTTCTATATTTTTAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTCGTCAGTAACCATAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTACAGTCAATTCAAGAACAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTCGTCAGTAACCATAAAAGCAACGTCCTTATCGCTCACTTGCATGACATACAAACTGAAATTTGTCCGATGTTTTCTCCTCTAGAGCTGCTGAGATTTCAAGAATTCTTAATTCTTGGAAACTAAGAAATTAGGGAAAATTAAGAAACCCAGAAATTTTGGAGATTTTCAAAATTCGTCGAAAACCTCAAAAAAATACTCACTCCACAACACCCATTGTTCTCCTTGTTGTTCTTGAATTGACTGTAA</canonical_amplicon>
		<polymorphic_amplicon>CGTCGTCAGTAACCATAAAAGCAACGTCCTTATCGCTCACTTGCATGACATACAAACTGAAATTTGTCCGATGTTTTCTCCTCTAGAGCTGCTGAGATTTCAAGAATTCTTAATTCTTGGAAACTAAGAAATTAGGGAAAATTAAGAAACCCAGAAATTTTGGRGATTTTCAAAATTCGTCGAAAACCTCAAAAAAATACTCACTCCACAACACCCATTGTTCTCCTTGTTGTTCTTGAATTGACTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30884</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>106985</contig_pos>
        <strand>+</strand>
        <context>CGGCAGGCAT[A/G]TTCCGATGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTAGGGTGGCGCGTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGGCAT</left_flank>
        <right_flank>TTCCGATGTACCCATGGCGATTTTCCGCGAACAATATTTCACCTATTATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATACACATTTTTCCGTCGTCAGTAACCATAAAAGCAACGTCCTTATCGCTCACTTGCATGACATACAAACTGAAATTTGTCCGATGTTTTCTCCTCTAGAGCTGCTGAGATTTCAAGAATTCTTAATTCTTGGAAACTAAGAAATTAGGGAAAATTAAGAAACCCAGAAATTTTGGAGATTTTCAAAATTCGTCGAAAACCTCAAAAAAATACTCACTCCACAACACCCATTGTTCTCCTTGTTGTTCTTGAATTGACTGTAAAGAGAGAACTCTGAGAAATATATTTTCGAAAATTCGAAAATCGAAAACTTCGTGGATTTCATAATTTCAGTGGCAATCTGGCGGCAACCGGCTAAATCTCAATTTTCTGAAATTTTTCGGAAGTCAAATTCTTCCTAAAATTTTTTTTTGAAAAAAATCCCACAACTCACAATTTAGGGTGCAATTTAGGGTGGCGCGTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGGCATATTCCGATGTACCCATGGCGATTTTCCGCGAACAATATTTCACCTATTATAGACGCTGCGCGAATCACCTGTGTCTGTGTGCAATGTCTGTGGTTCGATCCCTCTTGTGGTGTTTTGGTTTTTTTTCCCTTTTCTTCAATGCTCTGACATTCTGGGGAGTCTTTTTCTATATTTTTAAGGTTTTTGATTTTTTTTTTCTTCCAACAAAAAAGTGAAAAAGCACCTAATATAAAAGCTTTATTAGACAAGTAGGAACAACAAGAATATTAAAAAATCAATTAAAATAATCAGCCCAAAAATTAGACTTTTATTATTATAATTCAGTCCAGAATCCCGTGCTTGATCTCAACAAATAATCCAAATTAACGCGAATCACCTCAGATGGAACCTGAAAAAGTTTTATTAATTATCGATTTTTTTAAGCGACCTCCACTTCATCCTGGCTCTCTCCCAGCTCTTCGATCTCCTTATCCACTATTTTCAGCGCTTCGCCAGTGACTT</canonical>
            <polymorphic>GAATACACATTTTTCCGTCGTCAGTAACCATAAAAGCAACGTCCTTATCGCTCACTTGCATGACATACAAACTGAAATTTGTCCGATGTTTTCTCCTCTAGAGCTGCTGAGATTTCAAGAATTCTTAATTCTTGGAAACTAAGAAATTAGGGAAAATTAAGAAACCCAGAAATTTTGGAGATTTTCAAAATTCGTCGAAAACCTCAAAAAAATACTCACTCCACAACACCCATTGTTCTCCTTGTTGTTCTTGAATTGACTGTAAAGAGAGAACTCTGAGAAATATATTTTCGAAAATTCGAAAATCGAAAACTTCGTGGATTTCATAATTTCAGTGGCAATCTGGCGGCAACCGGCTAAATCTCAATTTTCTGAAATTTTTCGGAAGTCAAATTCTTCCTAAAATTTTTTTTTGAAAAAAATCCCACAACTCACAATTTAGGGTGCAATTTAGGGTGGCGCGTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGGCATRTTCCGATGTACCCATGGCGATTTTCCGCGAACAATATTTCACCTATTATAGACGCTGCGCGAATCACCTGTGTCTGTGTGCAATGTCTGTGGTTCGATCCCTCTTGTGGTGTTTTGGTTTTTTTTCCCTTTTCTTCAATGCTCTGACATTCTGGGGAGTCTTTTTCTATATTTTTAAGGTTTTTGATTTTTTTTTTCTTCCAACAAAAAAGTGAAAAAGCACCTAATATAAAAGCTTTATTAGACAAGTAGGAACAACAAGAATATTAAAAAATCAATTAAAATAATCAGCCCAAAAATTAGACTTTTATTATTATAATTCAGTCCAGAATCCCGTGCTTGATCTCAACAAATAATCCAAATTAACGCGAATCACCTCAGATGGAACCTGAAAAAGTTTTATTAATTATCGATTTTTTTAAGCGACCTCCACTTCATCCTGGCTCTCTCCCAGCTCTTCGATCTCCTTATCCACTATTTTCAGCGCTTCGCCAGTGACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCCCACAACTCACAATTTAG</pcr_primer_p1>
		<pcr_primer_p2>TATAGAAAAAGACTCCCCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCCCACAACTCACAATTTAGGGTGCAATTTAGGGTGGCGCGTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGGCATATTCCGATGTACCCATGGCGATTTTCCGCGAACAATATTTCACCTATTATAGACGCTGCGCGAATCACCTGTGTCTGTGTGCAATGTCTGTGGTTCGATCCCTCTTGTGGTGTTTTGGTTTTTTTTCCCTTTTCTTCAATGCTCTGACATTCTGGGGAGTCTTTTTCTATA</canonical_amplicon>
		<polymorphic_amplicon>AATCCCACAACTCACAATTTAGGGTGCAATTTAGGGTGGCGCGTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGGCATRTTCCGATGTACCCATGGCGATTTTCCGCGAACAATATTTCACCTATTATAGACGCTGCGCGAATCACCTGTGTCTGTGTGCAATGTCTGTGGTTCGATCCCTCTTGTGGTGTTTTGGTTTTTTTTCCCTTTTCTTCAATGCTCTGACATTCTGGGGAGTCTTTTTCTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30885</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>107001</contig_pos>
        <strand>+</strand>
        <context>ATGTACCCAT[A/G]GCGATTTTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCGATTGGTCTGTAAATGGCCTGCGGCAGGCATATTCCGATGTACCCAT</left_flank>
        <right_flank>GCGATTTTCCGCGAACAATATTTCACCTATTATAGACGCTGCGCGAATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCGTCAGTAACCATAAAAGCAACGTCCTTATCGCTCACTTGCATGACATACAAACTGAAATTTGTCCGATGTTTTCTCCTCTAGAGCTGCTGAGATTTCAAGAATTCTTAATTCTTGGAAACTAAGAAATTAGGGAAAATTAAGAAACCCAGAAATTTTGGAGATTTTCAAAATTCGTCGAAAACCTCAAAAAAATACTCACTCCACAACACCCATTGTTCTCCTTGTTGTTCTTGAATTGACTGTAAAGAGAGAACTCTGAGAAATATATTTTCGAAAATTCGAAAATCGAAAACTTCGTGGATTTCATAATTTCAGTGGCAATCTGGCGGCAACCGGCTAAATCTCAATTTTCTGAAATTTTTCGGAAGTCAAATTCTTCCTAAAATTTTTTTTTGAAAAAAATCCCACAACTCACAATTTAGGGTGCAATTTAGGGTGGCGCGTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGGCATATTCCGATGTACCCATGGCGATTTTCCGCGAACAATATTTCACCTATTATAGACGCTGCGCGAATCACCTGTGTCTGTGTGCAATGTCTGTGGTTCGATCCCTCTTGTGGTGTTTTGGTTTTTTTTCCCTTTTCTTCAATGCTCTGACATTCTGGGGAGTCTTTTTCTATATTTTTAAGGTTTTTGATTTTTTTTTTCTTCCAACAAAAAAGTGAAAAAGCACCTAATATAAAAGCTTTATTAGACAAGTAGGAACAACAAGAATATTAAAAAATCAATTAAAATAATCAGCCCAAAAATTAGACTTTTATTATTATAATTCAGTCCAGAATCCCGTGCTTGATCTCAACAAATAATCCAAATTAACGCGAATCACCTCAGATGGAACCTGAAAAAGTTTTATTAATTATCGATTTTTTTAAGCGACCTCCACTTCATCCTGGCTCTCTCCCAGCTCTTCGATCTCCTTATCCACTATTTTCAGCGCTTCGCCAGTGACTTCTGGTCCAAATGGGCG</canonical>
            <polymorphic>GTCGTCAGTAACCATAAAAGCAACGTCCTTATCGCTCACTTGCATGACATACAAACTGAAATTTGTCCGATGTTTTCTCCTCTAGAGCTGCTGAGATTTCAAGAATTCTTAATTCTTGGAAACTAAGAAATTAGGGAAAATTAAGAAACCCAGAAATTTTGGAGATTTTCAAAATTCGTCGAAAACCTCAAAAAAATACTCACTCCACAACACCCATTGTTCTCCTTGTTGTTCTTGAATTGACTGTAAAGAGAGAACTCTGAGAAATATATTTTCGAAAATTCGAAAATCGAAAACTTCGTGGATTTCATAATTTCAGTGGCAATCTGGCGGCAACCGGCTAAATCTCAATTTTCTGAAATTTTTCGGAAGTCAAATTCTTCCTAAAATTTTTTTTTGAAAAAAATCCCACAACTCACAATTTAGGGTGCAATTTAGGGTGGCGCGTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGGCATATTCCGATGTACCCATRGCGATTTTCCGCGAACAATATTTCACCTATTATAGACGCTGCGCGAATCACCTGTGTCTGTGTGCAATGTCTGTGGTTCGATCCCTCTTGTGGTGTTTTGGTTTTTTTTCCCTTTTCTTCAATGCTCTGACATTCTGGGGAGTCTTTTTCTATATTTTTAAGGTTTTTGATTTTTTTTTTCTTCCAACAAAAAAGTGAAAAAGCACCTAATATAAAAGCTTTATTAGACAAGTAGGAACAACAAGAATATTAAAAAATCAATTAAAATAATCAGCCCAAAAATTAGACTTTTATTATTATAATTCAGTCCAGAATCCCGTGCTTGATCTCAACAAATAATCCAAATTAACGCGAATCACCTCAGATGGAACCTGAAAAAGTTTTATTAATTATCGATTTTTTTAAGCGACCTCCACTTCATCCTGGCTCTCTCCCAGCTCTTCGATCTCCTTATCCACTATTTTCAGCGCTTCGCCAGTGACTTCTGGTCCAAATGGGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCATGG</site>
                <isoschizomers>
                    <enzyme>Bsp19I</enzyme>
                    <enzyme>NcoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 454 43</canonical_bands>
                <polymorphic_bands>957 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCCCACAACTCACAATTTAG</pcr_primer_p1>
		<pcr_primer_p2>TATAGAAAAAGACTCCCCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCCCACAACTCACAATTTAGGGTGCAATTTAGGGTGGCGCGTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGGCATATTCCGATGTACCCATGGCGATTTTCCGCGAACAATATTTCACCTATTATAGACGCTGCGCGAATCACCTGTGTCTGTGTGCAATGTCTGTGGTTCGATCCCTCTTGTGGTGTTTTGGTTTTTTTTCCCTTTTCTTCAATGCTCTGACATTCTGGGGAGTCTTTTTCTATA</canonical_amplicon>
		<polymorphic_amplicon>AATCCCACAACTCACAATTTAGGGTGCAATTTAGGGTGGCGCGTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGGCATATTCCGATGTACCCATRGCGATTTTCCGCGAACAATATTTCACCTATTATAGACGCTGCGCGAATCACCTGTGTCTGTGTGCAATGTCTGTGGTTCGATCCCTCTTGTGGTGTTTTGGTTTTTTTTCCCTTTTCTTCAATGCTCTGACATTCTGGGGAGTCTTTTTCTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30886</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>107058</contig_pos>
        <strand>+</strand>
        <context>ATCACCTGTG[G/T]CTGTGTGCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCCGCGAACAATATTTCACCTATTATAGACGCTGCGCGAATCACCTGTG</left_flank>
        <right_flank>CTGTGTGCAATGTCTGTGGTTCGATCCCTCTTGTGGTGTTTTGGTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATTTGTCCGATGTTTTCTCCTCTAGAGCTGCTGAGATTTCAAGAATTCTTAATTCTTGGAAACTAAGAAATTAGGGAAAATTAAGAAACCCAGAAATTTTGGAGATTTTCAAAATTCGTCGAAAACCTCAAAAAAATACTCACTCCACAACACCCATTGTTCTCCTTGTTGTTCTTGAATTGACTGTAAAGAGAGAACTCTGAGAAATATATTTTCGAAAATTCGAAAATCGAAAACTTCGTGGATTTCATAATTTCAGTGGCAATCTGGCGGCAACCGGCTAAATCTCAATTTTCTGAAATTTTTCGGAAGTCAAATTCTTCCTAAAATTTTTTTTTGAAAAAAATCCCACAACTCACAATTTAGGGTGCAATTTAGGGTGGCGCGTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGGCATATTCCGATGTACCCATGGCGATTTTCCGCGAACAATATTTCACCTATTATAGACGCTGCGCGAATCACCTGTGTCTGTGTGCAATGTCTGTGGTTCGATCCCTCTTGTGGTGTTTTGGTTTTTTTTCCCTTTTCTTCAATGCTCTGACATTCTGGGGAGTCTTTTTCTATATTTTTAAGGTTTTTGATTTTTTTTTTCTTCCAACAAAAAAGTGAAAAAGCACCTAATATAAAAGCTTTATTAGACAAGTAGGAACAACAAGAATATTAAAAAATCAATTAAAATAATCAGCCCAAAAATTAGACTTTTATTATTATAATTCAGTCCAGAATCCCGTGCTTGATCTCAACAAATAATCCAAATTAACGCGAATCACCTCAGATGGAACCTGAAAAAGTTTTATTAATTATCGATTTTTTTAAGCGACCTCCACTTCATCCTGGCTCTCTCCCAGCTCTTCGATCTCCTTATCCACTATTTTCAGCGCTTCGCCAGTGACTTCTGGTCCAAATGGGCGGATTAAAGATAGTTTTATATGTTTGAACACAGTTTTCAACTGCAGATTGCTTTCTGT</canonical>
            <polymorphic>GAAATTTGTCCGATGTTTTCTCCTCTAGAGCTGCTGAGATTTCAAGAATTCTTAATTCTTGGAAACTAAGAAATTAGGGAAAATTAAGAAACCCAGAAATTTTGGAGATTTTCAAAATTCGTCGAAAACCTCAAAAAAATACTCACTCCACAACACCCATTGTTCTCCTTGTTGTTCTTGAATTGACTGTAAAGAGAGAACTCTGAGAAATATATTTTCGAAAATTCGAAAATCGAAAACTTCGTGGATTTCATAATTTCAGTGGCAATCTGGCGGCAACCGGCTAAATCTCAATTTTCTGAAATTTTTCGGAAGTCAAATTCTTCCTAAAATTTTTTTTTGAAAAAAATCCCACAACTCACAATTTAGGGTGCAATTTAGGGTGGCGCGTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGGCATATTCCGATGTACCCATGGCGATTTTCCGCGAACAATATTTCACCTATTATAGACGCTGCGCGAATCACCTGTGKCTGTGTGCAATGTCTGTGGTTCGATCCCTCTTGTGGTGTTTTGGTTTTTTTTCCCTTTTCTTCAATGCTCTGACATTCTGGGGAGTCTTTTTCTATATTTTTAAGGTTTTTGATTTTTTTTTTCTTCCAACAAAAAAGTGAAAAAGCACCTAATATAAAAGCTTTATTAGACAAGTAGGAACAACAAGAATATTAAAAAATCAATTAAAATAATCAGCCCAAAAATTAGACTTTTATTATTATAATTCAGTCCAGAATCCCGTGCTTGATCTCAACAAATAATCCAAATTAACGCGAATCACCTCAGATGGAACCTGAAAAAGTTTTATTAATTATCGATTTTTTTAAGCGACCTCCACTTCATCCTGGCTCTCTCCCAGCTCTTCGATCTCCTTATCCACTATTTTCAGCGCTTCGCCAGTGACTTCTGGTCCAAATGGGCGGATTAAAGATAGTTTTATATGTTTGAACACAGTTTTCAACTGCAGATTGCTTTCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCCCACAACTCACAATTTAG</pcr_primer_p1>
		<pcr_primer_p2>TATAGAAAAAGACTCCCCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCCCACAACTCACAATTTAGGGTGCAATTTAGGGTGGCGCGTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGGCATATTCCGATGTACCCATGGCGATTTTCCGCGAACAATATTTCACCTATTATAGACGCTGCGCGAATCACCTGTGTCTGTGTGCAATGTCTGTGGTTCGATCCCTCTTGTGGTGTTTTGGTTTTTTTTCCCTTTTCTTCAATGCTCTGACATTCTGGGGAGTCTTTTTCTATA</canonical_amplicon>
		<polymorphic_amplicon>AATCCCACAACTCACAATTTAGGGTGCAATTTAGGGTGGCGCGTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGGCATATTCCGATGTACCCATGGCGATTTTCCGCGAACAATATTTCACCTATTATAGACGCTGCGCGAATCACCTGTGKCTGTGTGCAATGTCTGTGGTTCGATCCCTCTTGTGGTGTTTTGGTTTTTTTTCCCTTTTCTTCAATGCTCTGACATTCTGGGGAGTCTTTTTCTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30887</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>107086</contig_pos>
        <strand>+</strand>
        <context>GGTTCGATCC[C/T]TCTTGTGGTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACGCTGCGCGAATCACCTGTGTCTGTGTGCAATGTCTGTGGTTCGATCC</left_flank>
        <right_flank>TCTTGTGGTGTTTTGGTTTTTTTTCCCTTTTCTTCAATGCTCTGACATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTGCTGAGATTTCAAGAATTCTTAATTCTTGGAAACTAAGAAATTAGGGAAAATTAAGAAACCCAGAAATTTTGGAGATTTTCAAAATTCGTCGAAAACCTCAAAAAAATACTCACTCCACAACACCCATTGTTCTCCTTGTTGTTCTTGAATTGACTGTAAAGAGAGAACTCTGAGAAATATATTTTCGAAAATTCGAAAATCGAAAACTTCGTGGATTTCATAATTTCAGTGGCAATCTGGCGGCAACCGGCTAAATCTCAATTTTCTGAAATTTTTCGGAAGTCAAATTCTTCCTAAAATTTTTTTTTGAAAAAAATCCCACAACTCACAATTTAGGGTGCAATTTAGGGTGGCGCGTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGGCATATTCCGATGTACCCATGGCGATTTTCCGCGAACAATATTTCACCTATTATAGACGCTGCGCGAATCACCTGTGTCTGTGTGCAATGTCTGTGGTTCGATCCCTCTTGTGGTGTTTTGGTTTTTTTTCCCTTTTCTTCAATGCTCTGACATTCTGGGGAGTCTTTTTCTATATTTTTAAGGTTTTTGATTTTTTTTTTCTTCCAACAAAAAAGTGAAAAAGCACCTAATATAAAAGCTTTATTAGACAAGTAGGAACAACAAGAATATTAAAAAATCAATTAAAATAATCAGCCCAAAAATTAGACTTTTATTATTATAATTCAGTCCAGAATCCCGTGCTTGATCTCAACAAATAATCCAAATTAACGCGAATCACCTCAGATGGAACCTGAAAAAGTTTTATTAATTATCGATTTTTTTAAGCGACCTCCACTTCATCCTGGCTCTCTCCCAGCTCTTCGATCTCCTTATCCACTATTTTCAGCGCTTCGCCAGTGACTTCTGGTCCAAATGGGCGGATTAAAGATAGTTTTATATGTTTGAACACAGTTTTCAACTGCAGATTGCTTTCTGTTCTTGGAATTCTGGCTCTTTTAATACTT</canonical>
            <polymorphic>AGCTGCTGAGATTTCAAGAATTCTTAATTCTTGGAAACTAAGAAATTAGGGAAAATTAAGAAACCCAGAAATTTTGGAGATTTTCAAAATTCGTCGAAAACCTCAAAAAAATACTCACTCCACAACACCCATTGTTCTCCTTGTTGTTCTTGAATTGACTGTAAAGAGAGAACTCTGAGAAATATATTTTCGAAAATTCGAAAATCGAAAACTTCGTGGATTTCATAATTTCAGTGGCAATCTGGCGGCAACCGGCTAAATCTCAATTTTCTGAAATTTTTCGGAAGTCAAATTCTTCCTAAAATTTTTTTTTGAAAAAAATCCCACAACTCACAATTTAGGGTGCAATTTAGGGTGGCGCGTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGGCATATTCCGATGTACCCATGGCGATTTTCCGCGAACAATATTTCACCTATTATAGACGCTGCGCGAATCACCTGTGTCTGTGTGCAATGTCTGTGGTTCGATCCYTCTTGTGGTGTTTTGGTTTTTTTTCCCTTTTCTTCAATGCTCTGACATTCTGGGGAGTCTTTTTCTATATTTTTAAGGTTTTTGATTTTTTTTTTCTTCCAACAAAAAAGTGAAAAAGCACCTAATATAAAAGCTTTATTAGACAAGTAGGAACAACAAGAATATTAAAAAATCAATTAAAATAATCAGCCCAAAAATTAGACTTTTATTATTATAATTCAGTCCAGAATCCCGTGCTTGATCTCAACAAATAATCCAAATTAACGCGAATCACCTCAGATGGAACCTGAAAAAGTTTTATTAATTATCGATTTTTTTAAGCGACCTCCACTTCATCCTGGCTCTCTCCCAGCTCTTCGATCTCCTTATCCACTATTTTCAGCGCTTCGCCAGTGACTTCTGGTCCAAATGGGCGGATTAAAGATAGTTTTATATGTTTGAACACAGTTTTCAACTGCAGATTGCTTTCTGTTCTTGGAATTCTGGCTCTTTTAATACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCCCACAACTCACAATTTAG</pcr_primer_p1>
		<pcr_primer_p2>TATAGAAAAAGACTCCCCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCCCACAACTCACAATTTAGGGTGCAATTTAGGGTGGCGCGTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGGCATATTCCGATGTACCCATGGCGATTTTCCGCGAACAATATTTCACCTATTATAGACGCTGCGCGAATCACCTGTGTCTGTGTGCAATGTCTGTGGTTCGATCCCTCTTGTGGTGTTTTGGTTTTTTTTCCCTTTTCTTCAATGCTCTGACATTCTGGGGAGTCTTTTTCTATA</canonical_amplicon>
		<polymorphic_amplicon>AATCCCACAACTCACAATTTAGGGTGCAATTTAGGGTGGCGCGTTCGCGATTGGTCTGTAAATGGCCTGCGGCAGGCATATTCCGATGTACCCATGGCGATTTTCCGCGAACAATATTTCACCTATTATAGACGCTGCGCGAATCACCTGTGTCTGTGTGCAATGTCTGTGGTTCGATCCYTCTTGTGGTGTTTTGGTTTTTTTTCCCTTTTCTTCAATGCTCTGACATTCTGGGGAGTCTTTTTCTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30888</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>128671</contig_pos>
        <strand>+</strand>
        <context>GAAATTTCTG[A/G]AATTTCTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATCAAAGGATCTCAATTATTGAAATGACTGGGTTATGTAGAAATTTCTG</left_flank>
        <right_flank>AATTTCTGAATTTGGGATTTGATCGTTTGGAATCTAAACTTAGGTAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCTCTCATCAAGAGAACCTGCACATCTAACTATACGAAAACGTTCCATCTGGTTTTCTTCCTGAAGGAATCTTTTAAGAAACTTGAAAAAAACGGAAATTCGAATTTCCCGCCGAGATTATGGTGTCTGGAATCTATTCAGATTAGCTGGATTGGAAAATCCCTTGCAAAAAATGGTGCCAATTTTGGAATTTTTAGAATTTCCGACAAAATGCCAATTCCCATTTTCCCAGATTTTCAGTTCTGTCCAGCCAATTTTCTTTCCTGTTTTTATTCCTATTTTCTGGTTCCTGTCTAATCAAGAATACAAAGAAATCCGACAATTGGCAATTTTCAAAAGAGCAACTGAATGATGAAAAATTTCCTGCTCATTTTTCAAAGATCAATTATCTCGTCGTGATGTCTGGTCAGAGATAATTGGATCGAGAGAATGAAGAGAGGTCGTTGAGATCAAAGGATCTCAATTATTGAAATGACTGGGTTATGTAGAAATTTCTGAAATTTCTGAATTTGGGATTTGATCGTTTGGAATCTAAACTTAGGTAAATTTTCTAGAAATGTCAACATTTCCAAAAAAAACCCCCTAAAAATCACAAAAAACGGTAACTTTTGACCACTTTGAAATTTAGTGTCCAGATGGCCTAGTGGATTTTTCCACCAATTTTTACAGAAATCCACACAAAAGTTCGATCCCTTTGGGTGTCAAAACTTTATTTATTTTTGCGTGGACCTCGGAAAACACATTTTTATACAATTTGTACATCTGTAACGGTTTTTAAAAGGATTTTTTCTTAAAATTCAGGCAGGTCATATCATAATTTCTTTTTGGAATTAATATTTTTGACCATCTAAGTTAGATATAATAGAACTTGATGAAGTATTACGAACCGATACTAGTTGGGTTACTGTACCTTGTCTATGAACNNNNNNNNNNTAAAACTGTGACCGCGTAGCTCAGGCAGTTTTATGGCTTGTAACTTTGTTCATAGACAAGGCACA</canonical>
            <polymorphic>TATCTCTCATCAAGAGAACCTGCACATCTAACTATACGAAAACGTTCCATCTGGTTTTCTTCCTGAAGGAATCTTTTAAGAAACTTGAAAAAAACGGAAATTCGAATTTCCCGCCGAGATTATGGTGTCTGGAATCTATTCAGATTAGCTGGATTGGAAAATCCCTTGCAAAAAATGGTGCCAATTTTGGAATTTTTAGAATTTCCGACAAAATGCCAATTCCCATTTTCCCAGATTTTCAGTTCTGTCCAGCCAATTTTCTTTCCTGTTTTTATTCCTATTTTCTGGTTCCTGTCTAATCAAGAATACAAAGAAATCCGACAATTGGCAATTTTCAAAAGAGCAACTGAATGATGAAAAATTTCCTGCTCATTTTTCAAAGATCAATTATCTCGTCGTGATGTCTGGTCAGAGATAATTGGATCGAGAGAATGAAGAGAGGTCGTTGAGATCAAAGGATCTCAATTATTGAAATGACTGGGTTATGTAGAAATTTCTGRAATTTCTGAATTTGGGATTTGATCGTTTGGAATCTAAACTTAGGTAAATTTTCTAGAAATGTCAACATTTCCAAAAAAAACCCCCTAAAAATCACAAAAAACGGTAACTTTTGACCACTTTGAAATTTAGTGTCCAGATGGCCTAGTGGATTTTTCCACCAATTTTTACAGAAATCCACACAAAAGTTCGATCCCTTTGGGTGTCAAAACTTTATTTATTTTTGCGTGGACCTCGGAAAACACATTTTTATACAATTTGTACATCTGTAACGGTTTTTAAAAGGATTTTTTCTTAAAATTCAGGCAGGTCATATCATAATTTCTTTTTGGAATTAATATTTTTGACCATCTAAGTTAGATATAATAGAACTTGATGAAGTATTACGAACCGATACTAGTTGGGTTACTGTACCTTGTCTATGAACNNNNNNNNNNTAAAACTGTGACCGCGTAGCTCAGGCAGTTTTATGGCTTGTAACTTTGTTCATAGACAAGGCACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>204 173 160 132 98 86 77 38 9 9 8 6</canonical_bands>
                <polymorphic_bands>204 173 160 132 98 86 77 38 17 9 6</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>265 228 142 113 92 87 64 9</canonical_bands>
                <polymorphic_bands>265 228 142 113 96 92 64</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAAGAGAGGTCGTTGAGAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATCCTTTTAAAAACCGTTA</pcr_primer_p2>
		<pcr_amplicon_size>359</pcr_amplicon_size>
		<canonical_amplicon>ATGAAGAGAGGTCGTTGAGATCAAAGGATCTCAATTATTGAAATGACTGGGTTATGTAGAAATTTCTGAAATTTCTGAATTTGGGATTTGATCGTTTGGAATCTAAACTTAGGTAAATTTTCTAGAAATGTCAACATTTCCAAAAAAAACCCCCTAAAAATCACAAAAAACGGTAACTTTTGACCACTTTGAAATTTAGTGTCCAGATGGCCTAGTGGATTTTTCCACCAATTTTTACAGAAATCCACACAAAAGTTCGATCCCTTTGGGTGTCAAAACTTTATTTATTTTTGCGTGGACCTCGGAAAACACATTTTTATACAATTTGTACATCTGTAACGGTTTTTAAAAGGATTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATGAAGAGAGGTCGTTGAGATCAAAGGATCTCAATTATTGAAATGACTGGGTTATGTAGAAATTTCTGRAATTTCTGAATTTGGGATTTGATCGTTTGGAATCTAAACTTAGGTAAATTTTCTAGAAATGTCAACATTTCCAAAAAAAACCCCCTAAAAATCACAAAAAACGGTAACTTTTGACCACTTTGAAATTTAGTGTCCAGATGGCCTAGTGGATTTTTCCACCAATTTTTACAGAAATCCACACAAAAGTTCGATCCCTTTGGGTGTCAAAACTTTATTTATTTTTGCGTGGACCTCGGAAAACACATTTTTATACAATTTGTACATCTGTAACGGTTTTTAAAAGGATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30889</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>128714</contig_pos>
        <strand>+</strand>
        <context>TCTAAACTTA[A/G]GTRAATTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTCTGAAATTTCTGAATTTGGGATTTGATCGTTTGGAATCTAAACTTA</left_flank>
        <right_flank>GTAAATTTTCTAGAAATGTCAACATTTCCAAAAAAAACCCCCTAAAAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCCATCTGGTTTTCTTCCTGAAGGAATCTTTTAAGAAACTTGAAAAAAACGGAAATTCGAATTTCCCGCCGAGATTATGGTGTCTGGAATCTATTCAGATTAGCTGGATTGGAAAATCCCTTGCAAAAAATGGTGCCAATTTTGGAATTTTTAGAATTTCCGACAAAATGCCAATTCCCATTTTCCCAGATTTTCAGTTCTGTCCAGCCAATTTTCTTTCCTGTTTTTATTCCTATTTTCTGGTTCCTGTCTAATCAAGAATACAAAGAAATCCGACAATTGGCAATTTTCAAAAGAGCAACTGAATGATGAAAAATTTCCTGCTCATTTTTCAAAGATCAATTATCTCGTCGTGATGTCTGGTCAGAGATAATTGGATCGAGAGAATGAAGAGAGGTCGTTGAGATCAAAGGATCTCAATTATTGAAATGACTGGGTTATGTAGAAATTTCTGAAATTTCTGAATTTGGGATTTGATCGTTTGGAATCTAAACTTAGGTAAATTTTCTAGAAATGTCAACATTTCCAAAAAAAACCCCCTAAAAATCACAAAAAACGGTAACTTTTGACCACTTTGAAATTTAGTGTCCAGATGGCCTAGTGGATTTTTCCACCAATTTTTACAGAAATCCACACAAAAGTTCGATCCCTTTGGGTGTCAAAACTTTATTTATTTTTGCGTGGACCTCGGAAAACACATTTTTATACAATTTGTACATCTGTAACGGTTTTTAAAAGGATTTTTTCTTAAAATTCAGGCAGGTCATATCATAATTTCTTTTTGGAATTAATATTTTTGACCATCTAAGTTAGATATAATAGAACTTGATGAAGTATTACGAACCGATACTAGTTGGGTTACTGTACCTTGTCTATGAACNNNNNNNNNNTAAAACTGTGACCGCGTAGCTCAGGCAGTTTTATGGCTTGTAACTTTGTTCATAGACAAGGCACAGTAACACAACTAACATCGTTTTGTAATACTCGTCATGTTTTAT</canonical>
            <polymorphic>GTTCCATCTGGTTTTCTTCCTGAAGGAATCTTTTAAGAAACTTGAAAAAAACGGAAATTCGAATTTCCCGCCGAGATTATGGTGTCTGGAATCTATTCAGATTAGCTGGATTGGAAAATCCCTTGCAAAAAATGGTGCCAATTTTGGAATTTTTAGAATTTCCGACAAAATGCCAATTCCCATTTTCCCAGATTTTCAGTTCTGTCCAGCCAATTTTCTTTCCTGTTTTTATTCCTATTTTCTGGTTCCTGTCTAATCAAGAATACAAAGAAATCCGACAATTGGCAATTTTCAAAAGAGCAACTGAATGATGAAAAATTTCCTGCTCATTTTTCAAAGATCAATTATCTCGTCGTGATGTCTGGTCAGAGATAATTGGATCGAGAGAATGAAGAGAGGTCGTTGAGATCAAAGGATCTCAATTATTGAAATGACTGGGTTATGTAGAAATTTCTGAAATTTCTGAATTTGGGATTTGATCGTTTGGAATCTAAACTTARGTAAATTTTCTAGAAATGTCAACATTTCCAAAAAAAACCCCCTAAAAATCACAAAAAACGGTAACTTTTGACCACTTTGAAATTTAGTGTCCAGATGGCCTAGTGGATTTTTCCACCAATTTTTACAGAAATCCACACAAAAGTTCGATCCCTTTGGGTGTCAAAACTTTATTTATTTTTGCGTGGACCTCGGAAAACACATTTTTATACAATTTGTACATCTGTAACGGTTTTTAAAAGGATTTTTTCTTAAAATTCAGGCAGGTCATATCATAATTTCTTTTTGGAATTAATATTTTTGACCATCTAAGTTAGATATAATAGAACTTGATGAAGTATTACGAACCGATACTAGTTGGGTTACTGTACCTTGTCTATGAACNNNNNNNNNNTAAAACTGTGACCGCGTAGCTCAGGCAGTTTTATGGCTTGTAACTTTGTTCATAGACAAGGCACAGTAACACAACTAACATCGTTTTGTAATACTCGTCATGTTTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>496 311 105 88</canonical_bands>
                <polymorphic_bands>807 105 88</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATGACTGGGTTATGTAGAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATCCTTTTAAAAACCGTTA</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>GAAATGACTGGGTTATGTAGAAATTTCTGAAATTTCTGAATTTGGGATTTGATCGTTTGGAATCTAAACTTAGGTAAATTTTCTAGAAATGTCAACATTTCCAAAAAAAACCCCCTAAAAATCACAAAAAACGGTAACTTTTGACCACTTTGAAATTTAGTGTCCAGATGGCCTAGTGGATTTTTCCACCAATTTTTACAGAAATCCACACAAAAGTTCGATCCCTTTGGGTGTCAAAACTTTATTTATTTTTGCGTGGACCTCGGAAAACACATTTTTATACAATTTGTACATCTGTAACGGTTTTTAAAAGGATTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAAATGACTGGGTTATGTAGAAATTTCTGAAATTTCTGAATTTGGGATTTGATCGTTTGGAATCTAAACTTARGTAAATTTTCTAGAAATGTCAACATTTCCAAAAAAAACCCCCTAAAAATCACAAAAAACGGTAACTTTTGACCACTTTGAAATTTAGTGTCCAGATGGCCTAGTGGATTTTTCCACCAATTTTTACAGAAATCCACACAAAAGTTCGATCCCTTTGGGTGTCAAAACTTTATTTATTTTTGCGTGGACCTCGGAAAACACATTTTTATACAATTTGTACATCTGTAACGGTTTTTAAAAGGATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30890</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>128717</contig_pos>
        <strand>+</strand>
        <context>AAACTTARGT[A/G]AATTTTCTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGAAATTTCTGAATTTGGGATTTGATCGTTTGGAATCTAAACTTAGGT</left_flank>
        <right_flank>AATTTTCTAGAAATGTCAACATTTCCAAAAAAAACCCCCTAAAAATCACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCATCTGGTTTTCTTCCTGAAGGAATCTTTTAAGAAACTTGAAAAAAACGGAAATTCGAATTTCCCGCCGAGATTATGGTGTCTGGAATCTATTCAGATTAGCTGGATTGGAAAATCCCTTGCAAAAAATGGTGCCAATTTTGGAATTTTTAGAATTTCCGACAAAATGCCAATTCCCATTTTCCCAGATTTTCAGTTCTGTCCAGCCAATTTTCTTTCCTGTTTTTATTCCTATTTTCTGGTTCCTGTCTAATCAAGAATACAAAGAAATCCGACAATTGGCAATTTTCAAAAGAGCAACTGAATGATGAAAAATTTCCTGCTCATTTTTCAAAGATCAATTATCTCGTCGTGATGTCTGGTCAGAGATAATTGGATCGAGAGAATGAAGAGAGGTCGTTGAGATCAAAGGATCTCAATTATTGAAATGACTGGGTTATGTAGAAATTTCTGAAATTTCTGAATTTGGGATTTGATCGTTTGGAATCTAAACTTAGGTAAATTTTCTAGAAATGTCAACATTTCCAAAAAAAACCCCCTAAAAATCACAAAAAACGGTAACTTTTGACCACTTTGAAATTTAGTGTCCAGATGGCCTAGTGGATTTTTCCACCAATTTTTACAGAAATCCACACAAAAGTTCGATCCCTTTGGGTGTCAAAACTTTATTTATTTTTGCGTGGACCTCGGAAAACACATTTTTATACAATTTGTACATCTGTAACGGTTTTTAAAAGGATTTTTTCTTAAAATTCAGGCAGGTCATATCATAATTTCTTTTTGGAATTAATATTTTTGACCATCTAAGTTAGATATAATAGAACTTGATGAAGTATTACGAACCGATACTAGTTGGGTTACTGTACCTTGTCTATGAACNNNNNNNNNNTAAAACTGTGACCGCGTAGCTCAGGCAGTTTTATGGCTTGTAACTTTGTTCATAGACAAGGCACAGTAACACAACTAACATCGTTTTGTAATACTCGTCATGTTTTATCAT</canonical>
            <polymorphic>CCATCTGGTTTTCTTCCTGAAGGAATCTTTTAAGAAACTTGAAAAAAACGGAAATTCGAATTTCCCGCCGAGATTATGGTGTCTGGAATCTATTCAGATTAGCTGGATTGGAAAATCCCTTGCAAAAAATGGTGCCAATTTTGGAATTTTTAGAATTTCCGACAAAATGCCAATTCCCATTTTCCCAGATTTTCAGTTCTGTCCAGCCAATTTTCTTTCCTGTTTTTATTCCTATTTTCTGGTTCCTGTCTAATCAAGAATACAAAGAAATCCGACAATTGGCAATTTTCAAAAGAGCAACTGAATGATGAAAAATTTCCTGCTCATTTTTCAAAGATCAATTATCTCGTCGTGATGTCTGGTCAGAGATAATTGGATCGAGAGAATGAAGAGAGGTCGTTGAGATCAAAGGATCTCAATTATTGAAATGACTGGGTTATGTAGAAATTTCTGAAATTTCTGAATTTGGGATTTGATCGTTTGGAATCTAAACTTAGGTRAATTTTCTAGAAATGTCAACATTTCCAAAAAAAACCCCCTAAAAATCACAAAAAACGGTAACTTTTGACCACTTTGAAATTTAGTGTCCAGATGGCCTAGTGGATTTTTCCACCAATTTTTACAGAAATCCACACAAAAGTTCGATCCCTTTGGGTGTCAAAACTTTATTTATTTTTGCGTGGACCTCGGAAAACACATTTTTATACAATTTGTACATCTGTAACGGTTTTTAAAAGGATTTTTTCTTAAAATTCAGGCAGGTCATATCATAATTTCTTTTTGGAATTAATATTTTTGACCATCTAAGTTAGATATAATAGAACTTGATGAAGTATTACGAACCGATACTAGTTGGGTTACTGTACCTTGTCTATGAACNNNNNNNNNNTAAAACTGTGACCGCGTAGCTCAGGCAGTTTTATGGCTTGTAACTTTGTTCATAGACAAGGCACAGTAACACAACTAACATCGTTTTGTAATACTCGTCATGTTTTATCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>250 173 160 132 86 77 52 38 9 9 8 6</canonical_bands>
                <polymorphic_bands>250 173 160 132 115 86 52 9 9 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATGACTGGGTTATGTAGAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATCCTTTTAAAAACCGTTA</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>GAAATGACTGGGTTATGTAGAAATTTCTGAAATTTCTGAATTTGGGATTTGATCGTTTGGAATCTAAACTTAGGTAAATTTTCTAGAAATGTCAACATTTCCAAAAAAAACCCCCTAAAAATCACAAAAAACGGTAACTTTTGACCACTTTGAAATTTAGTGTCCAGATGGCCTAGTGGATTTTTCCACCAATTTTTACAGAAATCCACACAAAAGTTCGATCCCTTTGGGTGTCAAAACTTTATTTATTTTTGCGTGGACCTCGGAAAACACATTTTTATACAATTTGTACATCTGTAACGGTTTTTAAAAGGATTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAAATGACTGGGTTATGTAGAAATTTCTGAAATTTCTGAATTTGGGATTTGATCGTTTGGAATCTAAACTTAGGTRAATTTTCTAGAAATGTCAACATTTCCAAAAAAAACCCCCTAAAAATCACAAAAAACGGTAACTTTTGACCACTTTGAAATTTAGTGTCCAGATGGCCTAGTGGATTTTTCCACCAATTTTTACAGAAATCCACACAAAAGTTCGATCCCTTTGGGTGTCAAAACTTTATTTATTTTTGCGTGGACCTCGGAAAACACATTTTTATACAATTTGTACATCTGTAACGGTTTTTAAAAGGATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30891</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>144616</contig_pos>
        <strand>+</strand>
        <context>RTTTCCTATG[C/G]CGTCACAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATATCCATTTTTTCTCTAATTTTCAGACAAATATTTTCAGTTTCCTATG</left_flank>
        <right_flank>CGTCACAAGAATCTAAAAATTACTAATCGCTCAAAAATGTCAAAAAATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTAAATGTCACTCTGCGTACAGCTGTCGCCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTTGCGGCGCCGCACCATCAATCATCGCCCTCACAAGTTCAACTCTTCGAGGGGCATCTTTGAACGGAATTTCGAGAACTTTTTTTTTTCATGTCCCCCCACCTTTAAAAATTGACTGAAAATTCGAAACTGCAAAGAAAAAAAATTTTTTTTTTGAAAAATTAAGTTTTCTGGATCTAAAAACGACTATGTATTCTGAGTCATTTTCAGCAAAACGAAATTTAAAAATTTGTAAATTTTTGCAAATGGCCTAGAGAATGGAAGCTGGGGTGTCGGATTCGAAAAAAACTTTTTTTGTTGAAATATCCATTTTTTCTCTAATTTTCAGACAAATATTTTCAGTTTCCTATGACGTCACAAGAATCTAAAAATTACTAATCGCTCAAAAATGTCAAAAAATCAGAAAAGAGTACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGAGTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTT</canonical>
            <polymorphic>GAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTAAATGTCACTCTGCGTACAGCTGTCGCCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTTGCGGCGCCGCACCATCAATCATCGCCCTCACAAGTTCAACTCTTCGAGGGGCATCTTTGAACGGAATTTCGAGAACTTTTTTTTTTCATGTCCCCCCACCTTTAAAAATTGACTGAAAATTCGAAACTGCAAAGAAAAAAAATTTTTTTTTTGAAAAATTAAGTTTTCTGGATCTAAAAACGACTATGTATTCTGAGTCATTTTCAGCAAAACGAAATTTAAAAATTTGTAAATTTTTGCAAATGGCCTAGAGAATGGAAGCTGGGGTGTCGGATTCGAAAAAAACTTTTTTTGTTGAAATATCCATTTTTTCTCTAATTTTCAGACAAATATTTTCAGTTTCCTATGSCGTCACAAGAATCTAAAAATTACTAATCGCTCAAAAATGTCAAAAAATCAGAAAAGAGTACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGAGTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACGTC</site>
                <isoschizomers>
                    <enzyme>AatII</enzyme>
                    <enzyme>ZraI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>500 345 155</canonical_bands>
                <polymorphic_bands>845 155</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGACTATGTATTCTGAGTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTTCTTTTTCTTTCAACTTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CGACTATGTATTCTGAGTCATTTTCAGCAAAACGAAATTTAAAAATTTGTAAATTTTTGCAAATGGCCTAGAGAATGGAAGCTGGGGTGTCGGATTCGAAAAAAACTTTTTTTGTTGAAATATCCATTTTTTCTCTAATTTTCAGACAAATATTTTCAGTTTCCTATGACGTCACAAGAATCTAAAAATTACTAATCGCTCAAAAATGTCAAAAAATCAGAAAAGAGTACAAGTTGAAAGAAAAAGAACAA</canonical_amplicon>
		<polymorphic_amplicon>CGACTATGTATTCTGAGTCATTTTCAGCAAAACGAAATTTAAAAATTTGTAAATTTTTGCAAATGGCCTAGAGAATGGAAGCTGGGGTGTCGGATTCGAAAAAAACTTTTTTTGTTGAAATATCCATTTTTTCTCTAATTTTCAGACAAATATTTTCAGTTTCCTATGSCGTCACAAGAATCTAAAAATTACTAATCGCTCAAAAATGTCAAAAAATCAGAAAAGAGTACAAGTTGAAAGAAAAAGAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30892</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>144765</contig_pos>
        <strand>+</strand>
        <context>AAATTATTGR[A/G]TTTTGATATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGA</left_flank>
        <right_flank>TTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCGGCGCCGCACCATCAATCATCGCCCTCACAAGTTCAACTCTTCGAGGGGCATCTTTGAACGGAATTTCGAGAACTTTTTTTTTTCATGTCCCCCCACCTTTAAAAATTGACTGAAAATTCGAAACTGCAAAGAAAAAAAATTTTTTTTTTGAAAAATTAAGTTTTCTGGATCTAAAAACGACTATGTATTCTGAGTCATTTTCAGCAAAACGAAATTTAAAAATTTGTAAATTTTTGCAAATGGCCTAGAGAATGGAAGCTGGGGTGTCGGATTCGAAAAAAACTTTTTTTGTTGAAATATCCATTTTTTCTCTAATTTTCAGACAAATATTTTCAGTTTCCTATGACGTCACAAGAATCTAAAAATTACTAATCGCTCAAAAATGTCAAAAAATCAGAAAAGAGTACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGAGTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAAT</canonical>
            <polymorphic>TTGCGGCGCCGCACCATCAATCATCGCCCTCACAAGTTCAACTCTTCGAGGGGCATCTTTGAACGGAATTTCGAGAACTTTTTTTTTTCATGTCCCCCCACCTTTAAAAATTGACTGAAAATTCGAAACTGCAAAGAAAAAAAATTTTTTTTTTGAAAAATTAAGTTTTCTGGATCTAAAAACGACTATGTATTCTGAGTCATTTTCAGCAAAACGAAATTTAAAAATTTGTAAATTTTTGCAAATGGCCTAGAGAATGGAAGCTGGGGTGTCGGATTCGAAAAAAACTTTTTTTGTTGAAATATCCATTTTTTCTCTAATTTTCAGACAAATATTTTCAGTTTCCTATGACGTCACAAGAATCTAAAAATTACTAATCGCTCAAAAATGTCAAAAAATCAGAAAAGAGTACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGARTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAGTTGAAAGAAAAAGAACAA</pcr_primer_p1>
		<pcr_primer_p2>TAGAGCAAACTTGCATTATTACC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGAGTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTA</canonical_amplicon>
		<polymorphic_amplicon>ACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGARTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30893</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>144932</contig_pos>
        <strand>+</strand>
        <context>ATTGATAACT[A/T]AAAAAAAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACT</left_flank>
        <right_flank>AAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGGATCTAAAAACGACTATGTATTCTGAGTCATTTTCAGCAAAACGAAATTTAAAAATTTGTAAATTTTTGCAAATGGCCTAGAGAATGGAAGCTGGGGTGTCGGATTCGAAAAAAACTTTTTTTGTTGAAATATCCATTTTTTCTCTAATTTTCAGACAAATATTTTCAGTTTCCTATGACGTCACAAGAATCTAAAAATTACTAATCGCTCAAAAATGTCAAAAAATCAGAAAAGAGTACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGAGTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGCCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAAT</canonical>
            <polymorphic>TTCTGGATCTAAAAACGACTATGTATTCTGAGTCATTTTCAGCAAAACGAAATTTAAAAATTTGTAAATTTTTGCAAATGGCCTAGAGAATGGAAGCTGGGGTGTCGGATTCGAAAAAAACTTTTTTTGTTGAAATATCCATTTTTTCTCTAATTTTCAGACAAATATTTTCAGTTTCCTATGACGTCACAAGAATCTAAAAATTACTAATCGCTCAAAAATGTCAAAAAATCAGAAAAGAGTACAAGTTGAAAGAAAAAGAACAAAAAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGAGTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTWAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGCCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACTACTATCTAGAGATGCCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAACTTCAGTTCAAAAAGTGC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTWAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30894</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>145199</contig_pos>
        <strand>+</strand>
        <context>CGCACTATCT[A/C]ATTTTTTMGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCT</left_flank>
        <right_flank>ATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGAGTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGCCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAATATATTCATAACTTCAGATGATTGTGGAGACCCCGTTGGTGGAAATGTGAGAGAATTTTCATGAAAAATTTTGTTGACTTTCCAAATAAATTTTCCCATGAATTATAACCTCCAGTTCATACATAATCCATTAATTGCTATCATTTAGTGTGGGAGTCAATTTCTTCAAAGTTTCAGTTCCTCCAAATGCCTCGAAAAGACCGATCGTGTTCGTGGAGTGGACGGCCACTTTGGATGGAAATTGCGGAAGCGACAAGGGTTAAGGTAG</canonical>
            <polymorphic>AAATTGTTGTTCACACAATTTTTTGAGAAATTTGTTATTTTTGGTGACGAAAAACAAATTATTGAGTTTTGATATTCAACAATTTTCATATTTGCAAGTATTTTCCCAAAAATTTTTATTTCTTGACCTAACAAAAAATATTTGCTGCAAACTATTTACTACTATCTAGAGATGCCAAAAAAGAAGAATAGTTTTGAACGGGTAATAATGCAAGTTTGCTCTATTGATAACTAAAAAAAAATGCTGGTGAAAAATGCATAGAATTCGAAAATTTTTTAAAGAAGTCTTACGAAAAATTCCTGAAAAAACAAAGTTGAAAACCGGAGTTTTGGAAGAATTCGCAACAGAGTGCTTTTACTAATCAAAAGCTCATGATATCATTAGAGCGCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTMATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGCCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAATATATTCATAACTTCAGATGATTGTGGAGACCCCGTTGGTGGAAATGTGAGAGAATTTTCATGAAAAATTTTGTTGACTTTCCAAATAAATTTTCCCATGAATTATAACCTCCAGTTCATACATAATCCATTAATTGCTATCATTTAGTGTGGGAGTCAATTTCTTCAAAGTTTCAGTTCCTCCAAATGCCTCGAAAAGACCGATCGTGTTCGTGGAGTGGACGGCCACTTTGGATGGAAATTGCGGAAGCGACAAGGGTTAAGGTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>499 252 168 62 19</canonical_bands>
                <polymorphic_bands>561 252 168 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCACTTTTTGAACTGAAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGAAATTATTAGGGCAGAA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>GCACTTTTTGAACTGAAGTTTTCAAATTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTMATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30895</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>145612</contig_pos>
        <strand>+</strand>
        <context>RTTTCAGTTC[A/C]TCCAAATGCC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTAATTGCTATCATTTAGTGTGGGAGTCAATTTCTTCAAAGTTTCAGTTC</left_flank>
        <right_flank>TCCAAATGCCTCGAAAAGACCGATCGTGTTCGTGGAGTGGACGGCCACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGCCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAATATATTCATAACTTCAGATGATTGTGGAGACCCCGTTGGTGGAAATGTGAGAGAATTTTCATGAAAAATTTTGTTGACTTTCCAAATAAATTTTCCCATGAATTATAACCTCCAGTTCATACATAATCCATTAATTGCTATCATTTAGTGTGGGAGTCAATTTCTTCAAAGTTTCAGTTCCTCCAAATGCCTCGAAAAGACCGATCGTGTTCGTGGAGTGGACGGCCACTTTGGATGGAAATTGCGGAAGCGACAAGGGTTAAGGTAGGACATATTTATATAGATATATCGTAGCCTATGATTTGCAAACTCTAGGCCACGGAGGAGATGATAATTTGGGGGTATTGTATAATGGGGTCAATAATGATTTTTTTTTTAATTTTTTGCATTTTTTTCCGAACTTTTTTGAGTTTCTAACATACTTGAAACTTTTCGAAATTCCGATTTTCGCGAAACTTCCAAAAAGGTCTTGGTCTAAAAAATAAGTCACGATCTAATTTTAGGGTTTTCTAGGTCATGGTCTAATTTCTTTAGTTTGCCACGTCGTGACCTAATTTATTTCTAGATTTTTAAGTCATGACGTAATTTTCTAAACTTTCCAGGTCATGAATTAAGTCATGACCTTAACTTAATTGTTTGCCTTTCTAGGTGATGGCATAGTTTTTCGGATTTTTAGGTCAT</canonical>
            <polymorphic>TTTTCAAATATCTTGCGCATTAACTGAAGAGAAGTCCATAATAATTGACGGAGTGCAAGTTCTACAAAAAATAGAGCGCACTATCTGATTTTTTCGTTTCAAATTTTCAAATTTTTCAAAATGCGAAAGCTTTCAGCGGAAAATGTCCGAAATTTCCACTATCCAAAAACCCCCAAAATCAAAGCTTTATCATTGGAGCGCACTTTCTGCCCTAATAATTTCAAAATTGTATTTTTCAGCAATCTCGTCGTGATTCATGCCTTGAAGCACTGGATGCAGCTCGTCCATCATCAACACTTGGCGGTGCAGCGACTCCGAATATATTCATAACTTCAGATGATTGTGGAGACCCCGTTGGTGGAAATGTGAGAGAATTTTCATGAAAAATTTTGTTGACTTTCCAAATAAATTTTCCCATGAATTATAACCTCCAGTTCATACATAATCCATTAATTGCTATCATTTAGTGTGGGAGTCAATTTCTTCAAAGTTTCAGTTCMTCCAAATGCCTCGAAAAGACCGATCGTGTTCGTGGAGTGGACGGCCACTTTGGATGGAAATTGCGGAAGCGACAAGGGTTAAGGTAGGACATATTTATATAGATATATCGTAGCCTATGATTTGCAAACTCTAGGCCACGGAGGAGATGATAATTTGGGGGTATTGTATAATGGGGTCAATAATGATTTTTTTTTTAATTTTTTGCATTTTTTTCCGAACTTTTTTGAGTTTCTAACATACTTGAAACTTTTCGAAATTCCGATTTTCGCGAAACTTCCAAAAAGGTCTTGGTCTAAAAAATAAGTCACGATCTAATTTTAGGGTTTTCTAGGTCATGGTCTAATTTCTTTAGTTTGCCACGTCGTGACCTAATTTATTTCTAGATTTTTAAGTCATGACGTAATTTTCTAAACTTTCCAGGTCATGAATTAAGTCATGACCTTAACTTAATTGTTTGCCTTTCTAGGTGATGGCATAGTTTTTCGGATTTTTAGGTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGAATTATAACCTCCAGTTCA</pcr_primer_p1>
		<pcr_primer_p2>AATACCCCCAAATTATCATCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATGAATTATAACCTCCAGTTCATACATAATCCATTAATTGCTATCATTTAGTGTGGGAGTCAATTTCTTCAAAGTTTCAGTTCCTCCAAATGCCTCGAAAAGACCGATCGTGTTCGTGGAGTGGACGGCCACTTTGGATGGAAATTGCGGAAGCGACAAGGGTTAAGGTAGGACATATTTATATAGATATATCGTAGCCTATGATTTGCAAACTCTAGGCCACGGAGGAGATGATAATTTGGGGGTATT</canonical_amplicon>
		<polymorphic_amplicon>CATGAATTATAACCTCCAGTTCATACATAATCCATTAATTGCTATCATTTAGTGTGGGAGTCAATTTCTTCAAAGTTTCAGTTCMTCCAAATGCCTCGAAAAGACCGATCGTGTTCGTGGAGTGGACGGCCACTTTGGATGGAAATTGCGGAAGCGACAAGGGTTAAGGTAGGACATATTTATATAGATATATCGTAGCCTATGATTTGCAAACTCTAGGCCACGGAGGAGATGATAATTTGGGGGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30896</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>170109</contig_pos>
        <strand>+</strand>
        <context>AGGATTTGTT[A/G]AGAGCCGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGAAGCTGATTGACAAACTGAAATTTCCGCCGAATAAGGAGGATTTGTT</left_flank>
        <right_flank>AGAGCCGAAGTGCAAATTTTGGAGGTAAATCTTTGGAATTTTAAAAAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGTCCTCTGAAGTTCTATAATCTAATCAAAATTAGAATTTTTCTGAATTTTGCAGTTTTATGAAAGTTGGACGTCTTCTGAATTGTAGAATCTAAAAATTGTAGAATCTAAAAATTGTAGAATCTAAAATTCGGACGACATCTGAAATGTTCAAAATATGGATTTTGTTAATTTTGAAAAAAAAAAATTTTTTTTGAACTTAAAAATTTTTCTTAACACCAAATCTCAAAATGTTATTTCTGACGCCTTCTGAATTCAGAAGACTCTTAAAATCCACAATCAATTTCATTTTTTAATTTCAGGAGAAACTGGTCATCTCGGTGCAAAAATTCAAACGGAACAAGAGTTCTCCCAACTGTACCAAATCTTCGCCGAAGAAGTTTTGGGTTCCGGGCAATTCGGAACGGTATACGGTGGAATTCACCGGAGAAATGGACAACACGTGGCAGTGAAGCTGATTGACAAACTGAAATTTCCGCCGAATAAGGAGGATTTGTTGAGAGCCGAAGTGCAAATTTTGGAGGTAAATCTTTGGAATTTTAAAAAATGGGCCAAAAATATATATTTTGTCTGAAAAAAAAGAAAAAAACTTGTAAGAATAATTTATTCCAAATTTTAAGATTTCCATAAATGAATTTTGCAGCAAGTGGACCACCCAGGAGTGGTGCATTTCATGCAAATGCTCGAAACGACTGATCGAATTTTCGTTGTGATGGAAAAATTGAAAGGAGACATGCTGGAAATGATACTCTCGTCAGAGAAAGGACGACTCTCCGAGAGGACCACACAATTTTTGGTTGCTCAGATTTTGGAGGCATTGAGGTAAGAAGATTTGGGAACATTCTAGATCATGCTTGAGATACGAAATTGATTCGAAAAAAATAGGTTTGTTGAAAAAAAATCCAAAATTTATCGGCAAAAGATAAAATTCGAATTCTGGAAAACTCTGGATCTCAAAATCTACAAAAATGCCCCGAAATCCAAATTTTCAGTTTTAAT</canonical>
            <polymorphic>ACGTCCTCTGAAGTTCTATAATCTAATCAAAATTAGAATTTTTCTGAATTTTGCAGTTTTATGAAAGTTGGACGTCTTCTGAATTGTAGAATCTAAAAATTGTAGAATCTAAAAATTGTAGAATCTAAAATTCGGACGACATCTGAAATGTTCAAAATATGGATTTTGTTAATTTTGAAAAAAAAAAATTTTTTTTGAACTTAAAAATTTTTCTTAACACCAAATCTCAAAATGTTATTTCTGACGCCTTCTGAATTCAGAAGACTCTTAAAATCCACAATCAATTTCATTTTTTAATTTCAGGAGAAACTGGTCATCTCGGTGCAAAAATTCAAACGGAACAAGAGTTCTCCCAACTGTACCAAATCTTCGCCGAAGAAGTTTTGGGTTCCGGGCAATTCGGAACGGTATACGGTGGAATTCACCGGAGAAATGGACAACACGTGGCAGTGAAGCTGATTGACAAACTGAAATTTCCGCCGAATAAGGAGGATTTGTTRAGAGCCGAAGTGCAAATTTTGGAGGTAAATCTTTGGAATTTTAAAAAATGGGCCAAAAATATATATTTTGTCTGAAAAAAAAGAAAAAAACTTGTAAGAATAATTTATTCCAAATTTTAAGATTTCCATAAATGAATTTTGCAGCAAGTGGACCACCCAGGAGTGGTGCATTTCATGCAAATGCTCGAAACGACTGATCGAATTTTCGTTGTGATGGAAAAATTGAAAGGAGACATGCTGGAAATGATACTCTCGTCAGAGAAAGGACGACTCTCCGAGAGGACCACACAATTTTTGGTTGCTCAGATTTTGGAGGCATTGAGGTAAGAAGATTTGGGAACATTCTAGATCATGCTTGAGATACGAAATTGATTCGAAAAAAATAGGTTTGTTGAAAAAAAATCCAAAATTTATCGGCAAAAGATAAAATTCGAATTCTGGAAAACTCTGGATCTCAAAATCTACAAAAATGCCCCGAAATCCAAATTTTCAGTTTTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCAAACGGAACAAGAGT</pcr_primer_p1>
		<pcr_primer_p2>ATATATATTTTTGGCCCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AAATTCAAACGGAACAAGAGTTCTCCCAACTGTACCAAATCTTCGCCGAAGAAGTTTTGGGTTCCGGGCAATTCGGAACGGTATACGGTGGAATTCACCGGAGAAATGGACAACACGTGGCAGTGAAGCTGATTGACAAACTGAAATTTCCGCCGAATAAGGAGGATTTGTTGAGAGCCGAAGTGCAAATTTTGGAGGTAAATCTTTGGAATTTTAAAAAATGGGCCAAAAATATATAT</canonical_amplicon>
		<polymorphic_amplicon>AAATTCAAACGGAACAAGAGTTCTCCCAACTGTACCAAATCTTCGCCGAAGAAGTTTTGGGTTCCGGGCAATTCGGAACGGTATACGGTGGAATTCACCGGAGAAATGGACAACACGTGGCAGTGAAGCTGATTGACAAACTGAAATTTCCGCCGAATAAGGAGGATTTGTTRAGAGCCGAAGTGCAAATTTTGGAGGTAAATCTTTGGAATTTTAAAAAATGGGCCAAAAATATATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30897</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>172219</contig_pos>
        <strand>+</strand>
        <context>TTTCAATTTT[A/G]TGAATTTGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTT</left_flank>
        <right_flank>TGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCAATGAAGACGAAGATATTAATGATCAAATACAAAATGCCGAATTCATGTACCCACCGTCACCGTGGAAAGAGATTTCGGAGAATGGTAAGTGGAGTGGCGGGAGTTCGAAAAGTTTTGAAAATTTTAATTATACCGAATTTTTAAATTTTTGAGCATTTTTTGAAAATTTGAATTTTCGAATTTCAAATTTTTGTAATTTTGGATTTCTTAAAGTTTTCGAAATATTTCATTTTGAATGTTGGCAAACTTTTAGTTCTTGAAAAATTCTAAATTTTTCCAGCTATCGAATTCATCAACGGACTGCTTCAAGTGAAGATGAGCAAGCGGTATACGGTAGCGAAGGCGCAGTCGCATATCTGGATGCAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCTGGTCGGACCTTCGAGTGTTGGAAAAAGCAGTTGGTCAACGTTTCGTCACTCACGAATCGGATGATTCCAGATGGCATGCCTATGAAAAAGAACACAACGTCACACCGGTCTATGTCTGAAATTTTTTGTCCCTTGAAAAAAATTTCTAGATTTCTAATTTTTCTCTGAAAATTCCCATTTTTTCATCTCATCTCATCCATGTTTTCACACTCTTTATTGCATCTTCCTGCCACATATCGTCTTTTTTTTCTTGGAAAAATTTTAATTTCCCAGTTTTTTCCTTTATTTTTAACGCAAATCTCTTCTTTTTTTTCTCTGAAAATTCCCGTTTTTCCTAGTCAGAAATATCTAGTTTCATCCCGTTTTAAAAATTTCCCATATT</canonical>
            <polymorphic>ATTCAATGAAGACGAAGATATTAATGATCAAATACAAAATGCCGAATTCATGTACCCACCGTCACCGTGGAAAGAGATTTCGGAGAATGGTAAGTGGAGTGGCGGGAGTTCGAAAAGTTTTGAAAATTTTAATTATACCGAATTTTTAAATTTTTGAGCATTTTTTGAAAATTTGAATTTTCGAATTTCAAATTTTTGTAATTTTGGATTTCTTAAAGTTTTCGAAATATTTCATTTTGAATGTTGGCAAACTTTTAGTTCTTGAAAAATTCTAAATTTTTCCAGCTATCGAATTCATCAACGGACTGCTTCAAGTGAAGATGAGCAAGCGGTATACGGTAGCGAAGGCGCAGTCGCATATCTGGATGCAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTRTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCTGGTCGGACCTTCGAGTGTTGGAAAAAGCAGTTGGTCAACGTTTCGTCACTCACGAATCGGATGATTCCAGATGGCATGCCTATGAAAAAGAACACAACGTCACACCGGTCTATGTCTGAAATTTTTTGTCCCTTGAAAAAAATTTCTAGATTTCTAATTTTTCTCTGAAAATTCCCATTTTTTCATCTCATCTCATCCATGTTTTCACACTCTTTATTGCATCTTCCTGCCACATATCGTCTTTTTTTTCTTGGAAAAATTTTAATTTCCCAGTTTTTTCCTTTATTTTTAACGCAAATCTCTTCTTTTTTTTCTCTGAAAATTCCCGTTTTTCCTAGTCAGAAATATCTAGTTTCATCCCGTTTTAAAAATTTCCCATATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>324 151 122 95 82 58 54 49 41 24</canonical_bands>
                <polymorphic_bands>324 217 151 82 58 54 49 41 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGGTACAGTAATCCAAAATTCA</pcr_primer_p1>
		<pcr_primer_p2>AGATGGTGTAGTTCTGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCT</canonical_amplicon>
		<polymorphic_amplicon>CAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTRTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30898</snp_id>
        <super_contig>c005600531.Contig1</super_contig>
        <contig_pos>172308</contig_pos>
        <strand>+</strand>
        <context>TTCCAWAAAA[A/T]GTCTATTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAA</left_flank>
        <right_flank>GTCTATTTTTTTCCAGAACTACACCATCTGGTCGGACCTTCGAGTGTTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAAGTGGAGTGGCGGGAGTTCGAAAAGTTTTGAAAATTTTAATTATACCGAATTTTTAAATTTTTGAGCATTTTTTGAAAATTTGAATTTTCGAATTTCAAATTTTTGTAATTTTGGATTTCTTAAAGTTTTCGAAATATTTCATTTTGAATGTTGGCAAACTTTTAGTTCTTGAAAAATTCTAAATTTTTCCAGCTATCGAATTCATCAACGGACTGCTTCAAGTGAAGATGAGCAAGCGGTATACGGTAGCGAAGGCGCAGTCGCATATCTGGATGCAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCTGGTCGGACCTTCGAGTGTTGGAAAAAGCAGTTGGTCAACGTTTCGTCACTCACGAATCGGATGATTCCAGATGGCATGCCTATGAAAAAGAACACAACGTCACACCGGTCTATGTCTGAAATTTTTTGTCCCTTGAAAAAAATTTCTAGATTTCTAATTTTTCTCTGAAAATTCCCATTTTTTCATCTCATCTCATCCATGTTTTCACACTCTTTATTGCATCTTCCTGCCACATATCGTCTTTTTTTTCTTGGAAAAATTTTAATTTCCCAGTTTTTTCCTTTATTTTTAACGCAAATCTCTTCTTTTTTTTCTCTGAAAATTCCCGTTTTTCCTAGTCAGAAATATCTAGTTTCATCCCGTTTTAAAAATTTCCCATATTTCTTAAATTTTTCATTCACAATTTGCCATATGATCCTCGATTTACTTCCCCTATGTTTTATATGCAAATGGAGAAAAATGTTTCCCACT</canonical>
            <polymorphic>GTAAGTGGAGTGGCGGGAGTTCGAAAAGTTTTGAAAATTTTAATTATACCGAATTTTTAAATTTTTGAGCATTTTTTGAAAATTTGAATTTTCGAATTTCAAATTTTTGTAATTTTGGATTTCTTAAAGTTTTCGAAATATTTCATTTTGAATGTTGGCAAACTTTTAGTTCTTGAAAAATTCTAAATTTTTCCAGCTATCGAATTCATCAACGGACTGCTTCAAGTGAAGATGAGCAAGCGGTATACGGTAGCGAAGGCGCAGTCGCATATCTGGATGCAGGTACAGTAATCCAAAATTCAAGATTTTTAGCATCCGAAAATTATTCTAATTTCGAATCAAAAAGATTTAAAATAACTGGTAGAATTCCCAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAWGTCTATTTTTTTCCAGAACTACACCATCTGGTCGGACCTTCGAGTGTTGGAAAAAGCAGTTGGTCAACGTTTCGTCACTCACGAATCGGATGATTCCAGATGGCATGCCTATGAAAAAGAACACAACGTCACACCGGTCTATGTCTGAAATTTTTTGTCCCTTGAAAAAAATTTCTAGATTTCTAATTTTTCTCTGAAAATTCCCATTTTTTCATCTCATCTCATCCATGTTTTCACACTCTTTATTGCATCTTCCTGCCACATATCGTCTTTTTTTTCTTGGAAAAATTTTAATTTCCCAGTTTTTTCCTTTATTTTTAACGCAAATCTCTTCTTTTTTTTCTCTGAAAATTCCCGTTTTTCCTAGTCAGAAATATCTAGTTTCATCCCGTTTTAAAAATTTCCCATATTTCTTAAATTTTTCATTCACAATTTGCCATATGATCCTCGATTTACTTCCCCTATGTTTTATATGCAAATGGAGAAAAATGTTTCCCACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAACAAAAACTACCGTAACC</pcr_primer_p1>
		<pcr_primer_p2>ACGTTGTGTTCTTTTTCATAGG</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>CAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAAGTCTATTTTTTTCCAGAACTACACCATCTGGTCGGACCTTCGAGTGTTGGAAAAAGCAGTTGGTCAACGTTTCGTCACTCACGAATCGGATGATTCCAGATGGCATGCCTATGAAAAAGAACACAACGT</canonical_amplicon>
		<polymorphic_amplicon>CAGAACAAAAACTACCGTAACCTAACTTTTTTTCAATTTTCTGAATTTGTAAAAGTGTATGTATATCATCAAATTTTTTTAGAAAAAAACAATTCTAAAACTTCAAATTCTCAAATTTTTTCCAAAAAAWGTCTATTTTTTTCCAGAACTACACCATCTGGTCGGACCTTCGAGTGTTGGAAAAAGCAGTTGGTCAACGTTTCGTCACTCACGAATCGGATGATTCCAGATGGCATGCCTATGAAAAAGAACACAACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30899</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>25058</contig_pos>
        <strand>+</strand>
        <context>CTCTCTCTTT[G/T]CSACCTKTWC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTT</left_flank>
        <right_flank>CAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCAAACGTGATTATTAGCTAGCTCAGATCTCGGGGCAAAAACTTGATAGTTTTTTGATAAGGATTCGACTTCCACCGTGAAGAGTTTCTGGTCACCAAATATCCTATTCATGTGTTCATTTTGGTGCGTGCCAGCAAATGGAGATTTGCACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACT</canonical>
            <polymorphic>ATCCAAACGTGATTATTAGCTAGCTCAGATCTCGGGGCAAAAACTTGATAGTTTTTTGATAAGGATTCGACTTCCACCGTGAAGAGTTTCTGGTCACCAAATATCCTATTCATGTGTTCATTTTGGTGCGTGCCAGCAAATGGAGATTTGCACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTKCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 350 150</canonical_bands>
                <polymorphic_bands>850 150</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGAGAAACGGAGAGCTTTT</pcr_primer_p1>
		<pcr_primer_p2>GCCAAAAGTATGGTAACACAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGC</canonical_amplicon>
		<polymorphic_amplicon>GTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTKCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30900</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>25060</contig_pos>
        <strand>+</strand>
        <context>CTCTCTTTKC[C/G]ACCTKTWCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGC</left_flank>
        <right_flank>ACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAACGTGATTATTAGCTAGCTCAGATCTCGGGGCAAAAACTTGATAGTTTTTTGATAAGGATTCGACTTCCACCGTGAAGAGTTTCTGGTCACCAAATATCCTATTCATGTGTTCATTTTGGTGCGTGCCAGCAAATGGAGATTTGCACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTT</canonical>
            <polymorphic>CCAAACGTGATTATTAGCTAGCTCAGATCTCGGGGCAAAAACTTGATAGTTTTTTGATAAGGATTCGACTTCCACCGTGAAGAGTTTCTGGTCACCAAATATCCTATTCATGTGTTCATTTTGGTGCGTGCCAGCAAATGGAGATTTGCACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCSACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>502 350 148</canonical_bands>
                <polymorphic_bands>852 148</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGAGAAACGGAGAGCTTTT</pcr_primer_p1>
		<pcr_primer_p2>GCCAAAAGTATGGTAACACAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGC</canonical_amplicon>
		<polymorphic_amplicon>GTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCSACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30901</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>25065</contig_pos>
        <strand>+</strand>
        <context>TTTKCSACCT[G/T]TWCGAGGGTR</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCT</left_flank>
        <right_flank>TACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTGATTATTAGCTAGCTCAGATCTCGGGGCAAAAACTTGATAGTTTTTTGATAAGGATTCGACTTCCACCGTGAAGAGTTTCTGGTCACCAAATATCCTATTCATGTGTTCATTTTGGTGCGTGCCAGCAAATGGAGATTTGCACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTTTTCTT</canonical>
            <polymorphic>CGTGATTATTAGCTAGCTCAGATCTCGGGGCAAAAACTTGATAGTTTTTTGATAAGGATTCGACTTCCACCGTGAAGAGTTTCTGGTCACCAAATATCCTATTCATGTGTTCATTTTGGTGCGTGCCAGCAAATGGAGATTTGCACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTKTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTTTTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCTTTTCCGATAATCTTTAAT</pcr_primer_p1>
		<pcr_primer_p2>GCCAAAAGTATGGTAACACAA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGC</canonical_amplicon>
		<polymorphic_amplicon>GAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTKTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30902</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>25067</contig_pos>
        <strand>+</strand>
        <context>TKCSACCTKT[A/T]CGAGGGTRCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCT</left_flank>
        <right_flank>CGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATTATTAGCTAGCTCAGATCTCGGGGCAAAAACTTGATAGTTTTTTGATAAGGATTCGACTTCCACCGTGAAGAGTTTCTGGTCACCAAATATCCTATTCATGTGTTCATTTTGGTGCGTGCCAGCAAATGGAGATTTGCACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTTTTCTTCG</canonical>
            <polymorphic>TGATTATTAGCTAGCTCAGATCTCGGGGCAAAAACTTGATAGTTTTTTGATAAGGATTCGACTTCCACCGTGAAGAGTTTCTGGTCACCAAATATCCTATTCATGTGTTCATTTTGGTGCGTGCCAGCAAATGGAGATTTGCACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTWCGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTTTTCTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCTTTTCCGATAATCTTTAAT</pcr_primer_p1>
		<pcr_primer_p2>GCCAAAAGTATGGTAACACAA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGC</canonical_amplicon>
		<polymorphic_amplicon>GAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTWCGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30903</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>25075</contig_pos>
        <strand>+</strand>
        <context>KTWCGAGGGT[A/G]CCTAGGWGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGT</left_flank>
        <right_flank>CCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTAGCTCAGATCTCGGGGCAAAAACTTGATAGTTTTTTGATAAGGATTCGACTTCCACCGTGAAGAGTTTCTGGTCACCAAATATCCTATTCATGTGTTCATTTTGGTGCGTGCCAGCAAATGGAGATTTGCACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTTTTCTTCGCGAATTCT</canonical>
            <polymorphic>AGCTAGCTCAGATCTCGGGGCAAAAACTTGATAGTTTTTTGATAAGGATTCGACTTCCACCGTGAAGAGTTTCTGGTCACCAAATATCCTATTCATGTGTTCATTTTGGTGCGTGCCAGCAAATGGAGATTTGCACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTRCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTTTTCTTCGCGAATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>158 158 112 71 59 55 47 38 30 29 22 20 20 20 20 20 19 18 15 14 12 11 9 6 5 4 4 2 2</canonical_bands>
                <polymorphic_bands>158 158 112 71 59 55 51 47 38 30 20 20 20 20 20 19 18 15 14 12 11 9 6 5 4 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGCTTTTCCGATAATCTTTAAT</pcr_primer_p1>
		<pcr_primer_p2>GCCAAAAGTATGGTAACACAA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGC</canonical_amplicon>
		<polymorphic_amplicon>GAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTRCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30904</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>25082</contig_pos>
        <strand>+</strand>
        <context>GGTRCCTAGG[A/T]GTATAGAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGG</left_flank>
        <right_flank>GTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGATCTCGGGGCAAAAACTTGATAGTTTTTTGATAAGGATTCGACTTCCACCGTGAAGAGTTTCTGGTCACCAAATATCCTATTCATGTGTTCATTTTGGTGCGTGCCAGCAAATGGAGATTTGCACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTTTTCTTCGCGAATTCTTTTTTAT</canonical>
            <polymorphic>TCAGATCTCGGGGCAAAAACTTGATAGTTTTTTGATAAGGATTCGACTTCCACCGTGAAGAGTTTCTGGTCACCAAATATCCTATTCATGTGTTCATTTTGGTGCGTGCCAGCAAATGGAGATTTGCACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGWGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTTTTCTTCGCGAATTCTTTTTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAATTTCCGATAGCCACCT</pcr_primer_p1>
		<pcr_primer_p2>TGCTTCCTCTCCTAATCTATGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCA</canonical_amplicon>
		<polymorphic_amplicon>ATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGWGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30905</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>25128</contig_pos>
        <strand>+</strand>
        <context>CTAACGACTT[C/G]AAAATTTGKA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTT</left_flank>
        <right_flank>AAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCCACCGTGAAGAGTTTCTGGTCACCAAATATCCTATTCATGTGTTCATTTTGGTGCGTGCCAGCAAATGGAGATTTGCACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTTTTCTTCGCGAATTCTTTTTTATTAATTTTTTGTTAATTATTAATTTTTTGTAAATTTTTTGCACTTTT</canonical>
            <polymorphic>CTTCCACCGTGAAGAGTTTCTGGTCACCAAATATCCTATTCATGTGTTCATTTTGGTGCGTGCCAGCAAATGGAGATTTGCACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTSAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTTTTCTTCGCGAATTCTTTTTTATTAATTTTTTGTTAATTATTAATTTTTTGTAAATTTTTTGCACTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAATTTCCGATAGCCACCT</pcr_primer_p1>
		<pcr_primer_p2>TGCTTCCTCTCCTAATCTATGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCA</canonical_amplicon>
		<polymorphic_amplicon>ATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTSAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30906</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>25137</contig_pos>
        <strand>+</strand>
        <context>TSAAAATTTG[G/T]ATATCAACTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTG</left_flank>
        <right_flank>ATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAGAGTTTCTGGTCACCAAATATCCTATTCATGTGTTCATTTTGGTGCGTGCCAGCAAATGGAGATTTGCACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTTTTCTTCGCGAATTCTTTTTTATTAATTTTTTGTTAATTATTAATTTTTTGTAAATTTTTTGCACTTTTTTTATTAAT</canonical>
            <polymorphic>TGAAGAGTTTCTGGTCACCAAATATCCTATTCATGTGTTCATTTTGGTGCGTGCCAGCAAATGGAGATTTGCACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGKATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTTTTCTTCGCGAATTCTTTTTTATTAATTTTTTGTTAATTATTAATTTTTTGTAAATTTTTTGCACTTTTTTTATTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAATTTCCGATAGCCACCT</pcr_primer_p1>
		<pcr_primer_p2>TGCTTCCTCTCCTAATCTATGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCA</canonical_amplicon>
		<polymorphic_amplicon>ATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGKATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30907</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>25151</contig_pos>
        <strand>+</strand>
        <context>TCAACTAATT[A/G]AGACATGCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATT</left_flank>
        <right_flank>AGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACCAAATATCCTATTCATGTGTTCATTTTGGTGCGTGCCAGCAAATGGAGATTTGCACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTTTTCTTCGCGAATTCTTTTTTATTAATTTTTTGTTAATTATTAATTTTTTGTAAATTTTTTGCACTTTTTTTATTAATTATTAATTTTTTGT</canonical>
            <polymorphic>TCACCAAATATCCTATTCATGTGTTCATTTTGGTGCGTGCCAGCAAATGGAGATTTGCACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTRAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTTTTCTTCGCGAATTCTTTTTTATTAATTTTTTGTTAATTATTAATTTTTTGTAAATTTTTTGCACTTTTTTTATTAATTATTAATTTTTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAATTTCCGATAGCCACCT</pcr_primer_p1>
		<pcr_primer_p2>TGCTTCCTCTCCTAATCTATGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCA</canonical_amplicon>
		<polymorphic_amplicon>ATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTRAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30908</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>25168</contig_pos>
        <strand>+</strand>
        <context>GCTGAAAATT[A/G]AAAACATAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATT</left_flank>
        <right_flank>AAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGTGTTCATTTTGGTGCGTGCCAGCAAATGGAGATTTGCACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTTTTCTTCGCGAATTCTTTTTTATTAATTTTTTGTTAATTATTAATTTTTTGTAAATTTTTTGCACTTTTTTTATTAATTATTAATTTTTTGTACATTTTCCCTAATTTT</canonical>
            <polymorphic>CATGTGTTCATTTTGGTGCGTGCCAGCAAATGGAGATTTGCACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTRAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTTTTCTTCGCGAATTCTTTTTTATTAATTTTTTGTTAATTATTAATTTTTTGTAAATTTTTTGCACTTTTTTTATTAATTATTAATTTTTTGTACATTTTCCCTAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>364 227 92 86 53 52 40 33 28 11 7 7</canonical_bands>
                <polymorphic_bands>417 227 92 86 52 40 33 28 11 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAATTTCCGATAGCCACCT</pcr_primer_p1>
		<pcr_primer_p2>TGCTTCCTCTCCTAATCTATGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCA</canonical_amplicon>
		<polymorphic_amplicon>ATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTRAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30909</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>25182</contig_pos>
        <strand>+</strand>
        <context>ACATAAAATC[A/G]TAACCCYAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATC</left_flank>
        <right_flank>TAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTGCGTGCCAGCAAATGGAGATTTGCACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTTTTCTTCGCGAATTCTTTTTTATTAATTTTTTGTTAATTATTAATTTTTTGTAAATTTTTTGCACTTTTTTTATTAATTATTAATTTTTTGTACATTTTCCCTAATTTTTTGTCTATTTCTCT</canonical>
            <polymorphic>GGTGCGTGCCAGCAAATGGAGATTTGCACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCRTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTTTTCTTCGCGAATTCTTTTTTATTAATTTTTTGTTAATTATTAATTTTTTGTAAATTTTTTGCACTTTTTTTATTAATTATTAATTTTTTGTACATTTTCCCTAATTTTTTGTCTATTTCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>324 223 188 130 88 47</canonical_bands>
                <polymorphic_bands>324 223 188 135 130</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAATTTCCGATAGCCACCT</pcr_primer_p1>
		<pcr_primer_p2>TGCTTCCTCTCCTAATCTATGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCA</canonical_amplicon>
		<polymorphic_amplicon>ATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCRTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30910</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>25189</contig_pos>
        <strand>+</strand>
        <context>ATCRTAACCC[C/T]AAAACCRCKY</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCC</left_flank>
        <right_flank>AAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCAGCAAATGGAGATTTGCACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTTTTCTTCGCGAATTCTTTTTTATTAATTTTTTGTTAATTATTAATTTTTTGTAAATTTTTTGCACTTTTTTTATTAATTATTAATTTTTTGTACATTTTCCCTAATTTTTTGTCTATTTCTCTTGATATT</canonical>
            <polymorphic>GCCAGCAAATGGAGATTTGCACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCYAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTTTTCTTCGCGAATTCTTTTTTATTAATTTTTTGTTAATTATTAATTTTTTGTAAATTTTTTGCACTTTTTTTATTAATTATTAATTTTTTGTACATTTTCCCTAATTTTTTGTCTATTTCTCTTGATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAATTTCCGATAGCCACCT</pcr_primer_p1>
		<pcr_primer_p2>TGCTTCCTCTCCTAATCTATGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCA</canonical_amplicon>
		<polymorphic_amplicon>ATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCYAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30911</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>25196</contig_pos>
        <strand>+</strand>
        <context>CCCYAAAACC[A/G]CKYCAGYGCC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACC</left_flank>
        <right_flank>CTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGGAGATTTGCACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTTTTCTTCGCGAATTCTTTTTTATTAATTTTTTGTTAATTATTAATTTTTTGTAAATTTTTTGCACTTTTTTTATTAATTATTAATTTTTTGTACATTTTCCCTAATTTTTTGTCTATTTCTCTTGATATTTTGTCCT</canonical>
            <polymorphic>AATGGAGATTTGCACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCRCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTTTTCTTCGCGAATTCTTTTTTATTAATTTTTTGTTAATTATTAATTTTTTGTAAATTTTTTGCACTTTTTTTATTAATTATTAATTTTTTGTACATTTTCCCTAATTTTTTGTCTATTTCTCTTGATATTTTGTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>498 213 171 104 14</canonical_bands>
                <polymorphic_bands>669 213 104 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAATTTCCGATAGCCACCT</pcr_primer_p1>
		<pcr_primer_p2>TGCTTCCTCTCCTAATCTATGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCA</canonical_amplicon>
		<polymorphic_amplicon>ATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCRCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30912</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>25198</contig_pos>
        <strand>+</strand>
        <context>CYAAAACCRC[G/T]YCAGYGCCAM</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGC</left_flank>
        <right_flank>TCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAGATTTGCACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTTTTCTTCGCGAATTCTTTTTTATTAATTTTTTGTTAATTATTAATTTTTTGTAAATTTTTTGCACTTTTTTTATTAATTATTAATTTTTTGTACATTTTCCCTAATTTTTTGTCTATTTCTCTTGATATTTTGTCCTTT</canonical>
            <polymorphic>TGGAGATTTGCACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCKTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTTTTCTTCGCGAATTCTTTTTTATTAATTTTTTGTTAATTATTAATTTTTTGTAAATTTTTTGCACTTTTTTTATTAATTATTAATTTTTTGTACATTTTCCCTAATTTTTTGTCTATTTCTCTTGATATTTTGTCCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAATTTCCGATAGCCACCT</pcr_primer_p1>
		<pcr_primer_p2>TGCTTCCTCTCCTAATCTATGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCA</canonical_amplicon>
		<polymorphic_amplicon>ATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCKTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30913</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>25199</contig_pos>
        <strand>+</strand>
        <context>YAAAACCRCK[C/T]CAGYGCCAMC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCT</left_flank>
        <right_flank>CAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGATTTGCACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTTTTCTTCGCGAATTCTTTTTTATTAATTTTTTGTTAATTATTAATTTTTTGTAAATTTTTTGCACTTTTTTTATTAATTATTAATTTTTTGTACATTTTCCCTAATTTTTTGTCTATTTCTCTTGATATTTTGTCCTTTC</canonical>
            <polymorphic>GGAGATTTGCACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTYCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTTTTCTTCGCGAATTCTTTTTTATTAATTTTTTGTTAATTATTAATTTTTTGTAAATTTTTTGCACTTTTTTTATTAATTATTAATTTTTTGTACATTTTCCCTAATTTTTTGTCTATTTCTCTTGATATTTTGTCCTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAATTTCCGATAGCCACCT</pcr_primer_p1>
		<pcr_primer_p2>TGCTTCCTCTCCTAATCTATGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCA</canonical_amplicon>
		<polymorphic_amplicon>ATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTYCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30914</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>25203</contig_pos>
        <strand>+</strand>
        <context>ACCRCKYCAG[C/T]GCCAMCSAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAG</left_flank>
        <right_flank>GCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTGCACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTTTTCTTCGCGAATTCTTTTTTATTAATTTTTTGTTAATTATTAATTTTTTGTAAATTTTTTGCACTTTTTTTATTAATTATTAATTTTTTGTACATTTTCCCTAATTTTTTGTCTATTTCTCTTGATATTTTGTCCTTTCTCCC</canonical>
            <polymorphic>ATTTGCACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGYGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTTTTCTTCGCGAATTCTTTTTTATTAATTTTTTGTTAATTATTAATTTTTTGTAAATTTTTTGCACTTTTTTTATTAATTATTAATTTTTTGTACATTTTCCCTAATTTTTTGTCTATTTCTCTTGATATTTTGTCCTTTCTCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 320 179</canonical_bands>
                <polymorphic_bands>680 320</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAATTTCCGATAGCCACCT</pcr_primer_p1>
		<pcr_primer_p2>TGCTTCCTCTCCTAATCTATGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCA</canonical_amplicon>
		<polymorphic_amplicon>ATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGYGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30915</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>25208</contig_pos>
        <strand>+</strand>
        <context>KYCAGYGCCA[A/C]CSAGCTCGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCA</left_flank>
        <right_flank>CCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTTTTCTTCGCGAATTCTTTTTTATTAATTTTTTGTTAATTATTAATTTTTTGTAAATTTTTTGCACTTTTTTTATTAATTATTAATTTTTTGTACATTTTCCCTAATTTTTTGTCTATTTCTCTTGATATTTTGTCCTTTCTCCCTGATT</canonical>
            <polymorphic>CACTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAMCCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTTTTCTTCGCGAATTCTTTTTTATTAATTTTTTGTTAATTATTAATTTTTTGTAAATTTTTTGCACTTTTTTTATTAATTATTAATTTTTTGTACATTTTCCCTAATTTTTTGTCTATTTCTCTTGATATTTTGTCCTTTCTCCCTGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAATTTCCGATAGCCACCT</pcr_primer_p1>
		<pcr_primer_p2>TGCTTCCTCTCCTAATCTATGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCA</canonical_amplicon>
		<polymorphic_amplicon>ATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAMCCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30916</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>25210</contig_pos>
        <strand>+</strand>
        <context>CAGYGCCAMC[C/G]AGCTCGCACG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAAC</left_flank>
        <right_flank>AGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTTTTCTTCGCGAATTCTTTTTTATTAATTTTTTGTTAATTATTAATTTTTTGTAAATTTTTTGCACTTTTTTTATTAATTATTAATTTTTTGTACATTTTCCCTAATTTTTTGTCTATTTCTCTTGATATTTTGTCCTTTCTCCCTGATTTG</canonical>
            <polymorphic>CTTTTGGATGCGTACCAGATTCTTGTTTCCCGGCAGAATTCCAGTATTTTTAACACGATACAGGGTCAATCTGTGCTCACTTTTTACGATTAATCTGACTGATTTTCTGCTCAATCACAGCTCCAGAGTCATTGTTTTCATGATTTTCTGCGATTTCGACGAACTCGTTTTCTGACGGCCTTGATTCTCTCCTGAGTAACCAAAGATCAAGTTTTTACGTTTATCAGAATGTTCTTGACCGTACTCAACTAACCAAACCATTCGATGGTTATCCACAAGGTTGTTCGTGAGAAACGGAGAGCTTTTCCGATAATCTTTAATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACSAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCACGGAAAATCGAGACAGTGAGAGGAAAGCGGGAAACGTGTGGTAGTGGAGAAAAAATAACGCATGTGTGTATCAAGTCGGGCCTAAACCGCCGACTGTCCTCCGCGCCGTTCTGCCGTTCTTCTGTCCAGCCGTCTTGTGCCGACCTTTCGCTTTTTTGTCTAACTGTTTGTCGCCAACTTCTTGCTTTTTCGTCTTACCGTCTGCCGCCAACGTTTTGCTTTTCTGTCAATGGAACTATTTTCAAATAAGGTTAATAATTTTTTTTTGATAGTAGTTACTTTTTCTTCGCGAATTCTTTTTTATTAATTTTTTGTTAATTATTAATTTTTTGTAAATTTTTTGCACTTTTTTTATTAATTATTAATTTTTTGTACATTTTCCCTAATTTTTTGTCTATTTCTCTTGATATTTTGTCCTTTCTCCCTGATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAATTTCCGATAGCCACCT</pcr_primer_p1>
		<pcr_primer_p2>TGCTTCCTCTCCTAATCTATGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACCAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCA</canonical_amplicon>
		<polymorphic_amplicon>ATAATTTCCGATAGCCACCTCTCTCTTTGCAACCTCTACGAGGGTGCCTAGGAGTATAGAACTAGTCACCATTCGTGTAAAAGTTAACCTAACGACTTGAAAATTTGTATATCAACTAATTGAGACATGCTGAAAATTAAAAACATAAAATCGTAACCCCAAAACCGCTTCAGCGCCAACSAGCTCGCACGAAACTTGTGTTACCATACTTTTGGCCCACCCTGTATACATAGATTAGGAGAGGAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30917</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>96503</contig_pos>
        <strand></strand>
        <context>TTGTGAGCCT[A/G]GAGCAATTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGCTGCACGAATTGCCTTGAAGAAAGAAATACCCTTCAGTTGTGAGCCT</left_flank>
        <right_flank>GAGCAATTCTCGCATCCAGAACTTTGAGAATTCTTTGATCTTTTAGAATA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTCAAAACATTATATTCAGATAAAGAACCGTTTATGATATTTGACGAAGTACATCCAACAAACGGGAAGAGATACGTCGCATTCGGATCAAAAGTGGGACTTGAAATGTTGGAGAAGTCGTCGTTGCTCTTATCAGATGGCACATTCTCAGTAGCACAACCACCATTTGTTCAACTTTGAACAATTCATGCTACCTTCAGTGAATCCACGTTTCCAGTAAAAAAAAGAAATATTGCGTATTCTTTGTTAGAATTCGGGGAAATTTGAAGAAATACATGATAAAATAATAGAAGAAACACGAAAAATTTTTTGAAATTTATTTTAGAACAGAAATGACAACAAAATTAACGAAGCAAAATCAAAAAAAAAAGACAACAAATTGAACAACAAAAGCAACAACAATGATGAAGAAGAAATAAAACAGAAATCAAATTAGGTATACTTTTTCGCTGCACGAATTGCCTTGAAGAAAGAAATACCCTTCAGTTGTGAGCCTAGAGCAATTCTCGCATCCAGAACTTTGAGAATTCTTTGATCTTTTAGAATATCTTTCTTCTTGCGTTCAGCAGACACCTATAAGATAATTATTGAAAAATATAAGTGAAAACTTTAACCTTGTATGTTGGATCTGTTTCAAGAGCTTCTTTGTCAAACTTAAGTTTGCTCGCCTCCTGACGGAGACATTTGAGAAGTTCTGAGAGTAGTGGTGTCGATCTTCCTCTTGTGTCAACAACACATGCCTCCAGATTACGATGTTGTGATTCTACGGAGTTCTTAGTTCGAGGAAGATGGCGGAAAGATCTGTCCGAGACATTCCAAGTGGCTGGAGGGAACTTCAAAATTCTGACCGGTCCCACGTAGAAGTTTCGAATATACTTTACGAAATTCTGCATTTCGGCTGTTCGAATCTTGCAGCTTAAGCTGTTTCAATCGTCGGAACCAGGCCTGTAACAGATGAAAGTAACAGTATGTCTGGCGAATGTTTGGAAAAGCATTT</canonical>
            <polymorphic>TTCTTCAAAACATTATATTCAGATAAAGAACCGTTTATGATATTTGACGAAGTACATCCAACAAACGGGAAGAGATACGTCGCATTCGGATCAAAAGTGGGACTTGAAATGTTGGAGAAGTCGTCGTTGCTCTTATCAGATGGCACATTCTCAGTAGCACAACCACCATTTGTTCAACTTTGAACAATTCATGCTACCTTCAGTGAATCCACGTTTCCAGTAAAAAAAAGAAATATTGCGTATTCTTTGTTAGAATTCGGGGAAATTTGAAGAAATACATGATAAAATAATAGAAGAAACACGAAAAATTTTTTGAAATTTATTTTAGAACAGAAATGACAACAAAATTAACGAAGCAAAATCAAAAAAAAAAGACAACAAATTGAACAACAAAAGCAACAACAATGATGAAGAAGAAATAAAACAGAAATCAAATTAGGTATACTTTTTCGCTGCACGAATTGCCTTGAAGAAAGAAATACCCTTCAGTTGTGAGCCTRGAGCAATTCTCGCATCCAGAACTTTGAGAATTCTTTGATCTTTTAGAATATCTTTCTTCTTGCGTTCAGCAGACACCTATAAGATAATTATTGAAAAATATAAGTGAAAACTTTAACCTTGTATGTTGGATCTGTTTCAAGAGCTTCTTTGTCAAACTTAAGTTTGCTCGCCTCCTGACGGAGACATTTGAGAAGTTCTGAGAGTAGTGGTGTCGATCTTCCTCTTGTGTCAACAACACATGCCTCCAGATTACGATGTTGTGATTCTACGGAGTTCTTAGTTCGAGGAAGATGGCGGAAAGATCTGTCCGAGACATTCCAAGTGGCTGGAGGGAACTTCAAAATTCTGACCGGTCCCACGTAGAAGTTTCGAATATACTTTACGAAATTCTGCATTTCGGCTGTTCGAATCTTGCAGCTTAAGCTGTTTCAATCGTCGGAACCAGGCCTGTAACAGATGAAAGTAACAGTATGTCTGGCGAATGTTTGGAAAAGCATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATAATAGAAGAAACACGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CGCAAGAAGAAAGATATTCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>281</pcr_amplicon_size>
		<canonical_amplicon>AAAATAATAGAAGAAACACGAAAAATTTTTTGAAATTTATTTTAGAACAGAAATGACAACAAAATTAACGAAGCAAAATCAAAAAAAAAAGACAACAAATTGAACAACAAAAGCAACAACAATGATGAAGAAGAAATAAAACAGAAATCAAATTAGGTATACTTTTTCGCTGCACGAATTGCCTTGAAGAAAGAAATACCCTTCAGTTGTGAGCCTAGAGCAATTCTCGCATCCAGAACTTTGAGAATTCTTTGATCTTTTAGAATATCTTTCTTCTTGCG</canonical_amplicon>
		<polymorphic_amplicon>AAAATAATAGAAGAAACACGAAAAATTTTTTGAAATTTATTTTAGAACAGAAATGACAACAAAATTAACGAAGCAAAATCAAAAAAAAAAGACAACAAATTGAACAACAAAAGCAACAACAATGATGAAGAAGAAATAAAACAGAAATCAAATTAGGTATACTTTTTCGCTGCACGAATTGCCTTGAAGAAAGAAATACCCTTCAGTTGTGAGCCTRGAGCAATTCTCGCATCCAGAACTTTGAGAATTCTTTGATCTTTTAGAATATCTTTCTTCTTGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30918</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>96781</contig_pos>
        <strand></strand>
        <context>TACGGAGTTC[T/G]TAGTTCGAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TGTCAACAACACATGCCTCCAGATTACGATGTTGTGATTCTACGGAGTTC</left_flank>
        <right_flank>TAGTTCGAGGAAGATGGCGGAAAGATCTGTCCGAGACATTCCAAGTGGCT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGATAAAATAATAGAAGAAACACGAAAAATTTTTTGAAATTTATTTTAGAACAGAAATGACAACAAAATTAACGAAGCAAAATCAAAAAAAAAAGACAACAAATTGAACAACAAAAGCAACAACAATGATGAAGAAGAAATAAAACAGAAATCAAATTAGGTATACTTTTTCGCTGCACGAATTGCCTTGAAGAAAGAAATACCCTTCAGTTGTGAGCCTAGAGCAATTCTCGCATCCAGAACTTTGAGAATTCTTTGATCTTTTAGAATATCTTTCTTCTTGCGTTCAGCAGACACCTATAAGATAATTATTGAAAAATATAAGTGAAAACTTTAACCTTGTATGTTGGATCTGTTTCAAGAGCTTCTTTGTCAAACTTAAGTTTGCTCGCCTCCTGACGGAGACATTTGAGAAGTTCTGAGAGTAGTGGTGTCGATCTTCCTCTTGTGTCAACAACACATGCCTCCAGATTACGATGTTGTGATTCTACGGAGTTCTTAGTTCGAGGAAGATGGCGGAAAGATCTGTCCGAGACATTCCAAGTGGCTGGAGGGAACTTCAAAATTCTGACCGGTCCCACGTAGAAGTTTCGAATATACTTTACGAAATTCTGCATTTCGGCTGTTCGAATCTTGCAGCTTAAGCTGTTTCAATCGTCGGAACCAGGCCTGTAACAGATGAAAGTAACAGTATGTCTGGCGAATGTTTGGAAAAGCATTTTTGATTGCTGTTGCTTGTCCGATTTCGAGGTCTCCAAGATAATCCTGAGGGTCCCAAAGTGGAATGATCGATTTCAAACGTCCCAGCACATAATCGTAGTCCACGATCTGGCGGCCACTCATCAAAACATGAACTACTGGAAACGTGGATTCACTGAAGGTAGCATGAATTGTCCAAAGTTGAACAAATGGTGGTTGTGCTACTGAGAATGTGCCATCTGATAAGAGCAACGACGACTTCTCCAACATTTCAAGTCCCACTTTTGATCCGAATGCGAC</canonical>
            <polymorphic>ATGATAAAATAATAGAAGAAACACGAAAAATTTTTTGAAATTTATTTTAGAACAGAAATGACAACAAAATTAACGAAGCAAAATCAAAAAAAAAAGACAACAAATTGAACAACAAAAGCAACAACAATGATGAAGAAGAAATAAAACAGAAATCAAATTAGGTATACTTTTTCGCTGCACGAATTGCCTTGAAGAAAGAAATACCCTTCAGTTGTGAGCCTAGAGCAATTCTCGCATCCAGAACTTTGAGAATTCTTTGATCTTTTAGAATATCTTTCTTCTTGCGTTCAGCAGACACCTATAAGATAATTATTGAAAAATATAAGTGAAAACTTTAACCTTGTATGTTGGATCTGTTTCAAGAGCTTCTTTGTCAAACTTAAGTTTGCTCGCCTCCTGACGGAGACATTTGAGAAGTTCTGAGAGTAGTGGTGTCGATCTTCCTCTTGTGTCAACAACACATGCCTCCAGATTACGATGTTGTGATTCTACGGAGTTCKTAGTTCGAGGAAGATGGCGGAAAGATCTGTCCGAGACATTCCAAGTGGCTGGAGGGAACTTCAAAATTCTGACCGGTCCCACGTAGAAGTTTCGAATATACTTTACGAAATTCTGCATTTCGGCTGTTCGAATCTTGCAGCTTAAGCTGTTTCAATCGTCGGAACCAGGCCTGTAACAGATGAAAGTAACAGTATGTCTGGCGAATGTTTGGAAAAGCATTTTTGATTGCTGTTGCTTGTCCGATTTCGAGGTCTCCAAGATAATCCTGAGGGTCCCAAAGTGGAATGATCGATTTCAAACGTCCCAGCACATAATCGTAGTCCACGATCTGGCGGCCACTCATCAAAACATGAACTACTGGAAACGTGGATTCACTGAAGGTAGCATGAATTGTCCAAAGTTGAACAAATGGTGGTTGTGCTACTGAGAATGTGCCATCTGATAAGAGCAACGACGACTTCTCCAACATTTCAAGTCCCACTTTTGATCCGAATGCGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>420 268 158 79 75</canonical_bands>
                <polymorphic_bands>420 347 158 75</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGAGCTTCTTTGTCAAACTTA</pcr_primer_p1>
		<pcr_primer_p2>ATTTCGTAAAGTATATTCGAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAAGAGCTTCTTTGTCAAACTTAAGTTTGCTCGCCTCCTGACGGAGACATTTGAGAAGTTCTGAGAGTAGTGGTGTCGATCTTCCTCTTGTGTCAACAACACATGCCTCCAGATTACGATGTTGTGATTCTACGGAGTTCTTAGTTCGAGGAAGATGGCGGAAAGATCTGTCCGAGACATTCCAAGTGGCTGGAGGGAACTTCAAAATTCTGACCGGTCCCACGTAGAAGTTTCGAATATACTTTACGAAAT</canonical_amplicon>
		<polymorphic_amplicon>CAAGAGCTTCTTTGTCAAACTTAAGTTTGCTCGCCTCCTGACGGAGACATTTGAGAAGTTCTGAGAGTAGTGGTGTCGATCTTCCTCTTGTGTCAACAACACATGCCTCCAGATTACGATGTTGTGATTCTACGGAGTTCKTAGTTCGAGGAAGATGGCGGAAAGATCTGTCCGAGACATTCCAAGTGGCTGGAGGGAACTTCAAAATTCTGACCGGTCCCACGTAGAAGTTTCGAATATACTTTACGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30919</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>97656</contig_pos>
        <strand>+</strand>
        <context>ATGCCTCTCT[C/T]TCTTTTCATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGAGCCAAATTTCACACTGTCTCTTTTATTTCAAACGTTATGCCTCTCT</left_flank>
        <right_flank>TCTTTTCATGATATGCCTTCTGAAGCTCCCAACCTGATATTTCATAATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAAGGTAGCATGAATTGTCCAAAGTTGAACAAATGGTGGTTGTGCTACTGAGAATGTGCCATCTGATAAGAGCAACGACGACTTCTCCAACATTTCAAGTCCCACTTTTGATCCGAATGCGACGTATCTCTTCCCGTTTGTTGGATGTACTTCGTCAAATATCATAAACGGTTCTTTATCTGAATATAATGTTTTGAAGAAGAACATCTATTTACTGATCACCATTATCCACAATCATGACTATTTTATCATGTATTTCTTCAAATTTCCCCGAATTCTAACAAAGAATACGCAATATTTCTTTTTTTAAAGCTGAAAACAAGATTTTCGCATTTCTGTGCAAACACCACCACGCGCAATTGCGGACCTGGGTTCGCAAACGTCGTGGTTCGCAACCGTCGCGTTTTCAACTGTCGGGTTCGCAAGTGTCGTGGTTCGCAAACGTCTAGGAGCCAAATTTCACACTGTCTCTTTTATTTCAAACGTTATGCCTCTCTTTCTTTTCATGATATGCCTTCTGAAGCTCCCAACCTGATATTTCATAATTTCTTCTATTACAGTGTTCATCTTCACTGCCGTCAATATTCCCTTATTCACCGGTTCTTTTCCCCTTTCCTTATCTCAAATCTTTTTTGCTTCAAAAAAAAAGTTTACATGAATTCGTCGATTTATCAAAGAAGATGCATAGCGCTAATAGTCAAAAGAAGATACAAGAGACGGTGTGACGGGTAGCTGAAGATATACAGATTAGTGCAATCAGCAGACAAAGTAGTTCTAATTTTGAGATCACTCTTTCATGCGAAGCTCACTTTTTTAATTATTTGTCTTATAGCGCAAACAGTAACTTCAAATCTCCGGTGTTCTCAACTCCCCTTTCGCAATCGTTCAGTTTTTTTTTCTTTCCCTCTCGCCCTCTTGGGGTCCACTTCATCGTTCGGGCGACAGCTCGCGGAAAAGAGACTGTCGGGCGACCGCAAAAAATATACGTGGCCATCGAC</canonical>
            <polymorphic>CTGAAGGTAGCATGAATTGTCCAAAGTTGAACAAATGGTGGTTGTGCTACTGAGAATGTGCCATCTGATAAGAGCAACGACGACTTCTCCAACATTTCAAGTCCCACTTTTGATCCGAATGCGACGTATCTCTTCCCGTTTGTTGGATGTACTTCGTCAAATATCATAAACGGTTCTTTATCTGAATATAATGTTTTGAAGAAGAACATCTATTTACTGATCACCATTATCCACAATCATGACTATTTTATCATGTATTTCTTCAAATTTCCCCGAATTCTAACAAAGAATACGCAATATTTCTTTTTTTAAAGCTGAAAACAAGATTTTCGCATTTCTGTGCAAACACCACCACGCGCAATTGCGGACCTGGGTTCGCAAACGTCGTGGTTCGCAACCGTCGCGTTTTCAACTGTCGGGTTCGCAAGTGTCGTGGTTCGCAAACGTCTAGGAGCCAAATTTCACACTGTCTCTTTTATTTCAAACGTTATGCCTCTCTYTCTTTTCATGATATGCCTTCTGAAGCTCCCAACCTGATATTTCATAATTTCTTCTATTACAGTGTTCATCTTCACTGCCGTCAATATTCCCTTATTCACCGGTTCTTTTCCCCTTTCCTTATCTCAAATCTTTTTTGCTTCAAAAAAAAAGTTTACATGAATTCGTCGATTTATCAAAGAAGATGCATAGCGCTAATAGTCAAAAGAAGATACAAGAGACGGTGTGACGGGTAGCTGAAGATATACAGATTAGTGCAATCAGCAGACAAAGTAGTTCTAATTTTGAGATCACTCTTTCATGCGAAGCTCACTTTTTTAATTATTTGTCTTATAGCGCAAACAGTAACTTCAAATCTCCGGTGTTCTCAACTCCCCTTTCGCAATCGTTCAGTTTTTTTTTCTTTCCCTCTCGCCCTCTTGGGGTCCACTTCATCGTTCGGGCGACAGCTCGCGGAAAAGAGACTGTCGGGCGACCGCAAAAAATATACGTGGCCATCGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGGAGCCAAATTTCACACT</pcr_primer_p1>
		<pcr_primer_p2>GCTATGCATCTTCTTTGATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CTAGGAGCCAAATTTCACACTGTCTCTTTTATTTCAAACGTTATGCCTCTCTTTCTTTTCATGATATGCCTTCTGAAGCTCCCAACCTGATATTTCATAATTTCTTCTATTACAGTGTTCATCTTCACTGCCGTCAATATTCCCTTATTCACCGGTTCTTTTCCCCTTTCCTTATCTCAAATCTTTTTTGCTTCAAAAAAAAAGTTTACATGAATTCGTCGATTTATCAAAGAAGATGCATAGC</canonical_amplicon>
		<polymorphic_amplicon>CTAGGAGCCAAATTTCACACTGTCTCTTTTATTTCAAACGTTATGCCTCTCTYTCTTTTCATGATATGCCTTCTGAAGCTCCCAACCTGATATTTCATAATTTCTTCTATTACAGTGTTCATCTTCACTGCCGTCAATATTCCCTTATTCACCGGTTCTTTTCCCCTTTCCTTATCTCAAATCTTTTTTGCTTCAAAAAAAAAGTTTACATGAATTCGTCGATTTATCAAAGAAGATGCATAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30920</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>98003</contig_pos>
        <strand>+</strand>
        <context>CAAACAGTAA[C/T]TTCAAATCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATGCGAAGCTCACTTTTTTAATTATTTGTCTTATAGCGCAAACAGTAA</left_flank>
        <right_flank>TTCAAATCTCCGGTGTTCTCAACTCCCCTTTCGCAATCGTTCAGTTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCACCACGCGCAATTGCGGACCTGGGTTCGCAAACGTCGTGGTTCGCAACCGTCGCGTTTTCAACTGTCGGGTTCGCAAGTGTCGTGGTTCGCAAACGTCTAGGAGCCAAATTTCACACTGTCTCTTTTATTTCAAACGTTATGCCTCTCTTTCTTTTCATGATATGCCTTCTGAAGCTCCCAACCTGATATTTCATAATTTCTTCTATTACAGTGTTCATCTTCACTGCCGTCAATATTCCCTTATTCACCGGTTCTTTTCCCCTTTCCTTATCTCAAATCTTTTTTGCTTCAAAAAAAAAGTTTACATGAATTCGTCGATTTATCAAAGAAGATGCATAGCGCTAATAGTCAAAAGAAGATACAAGAGACGGTGTGACGGGTAGCTGAAGATATACAGATTAGTGCAATCAGCAGACAAAGTAGTTCTAATTTTGAGATCACTCTTTCATGCGAAGCTCACTTTTTTAATTATTTGTCTTATAGCGCAAACAGTAACTTCAAATCTCCGGTGTTCTCAACTCCCCTTTCGCAATCGTTCAGTTTTTTTTTCTTTCCCTCTCGCCCTCTTGGGGTCCACTTCATCGTTCGGGCGACAGCTCGCGGAAAAGAGACTGTCGGGCGACCGCAAAAAATATACGTGGCCATCGACGCTGCGTCTCTTATTTTACCAATGAAATCGAATCTCTTACTATCACTTTGGCGTCTGCGTCTCCTCATCACATATTCCTTGGAGTTCCTGGCCACATCATAACCCCTCCATACAGCGACGACTGAGGTCTGATGTTTTTCGGTCCTCAGTTTTAGCTTCCCTTGAGGACTTCACTGAAAAGACGTCTCAATATTTAGGAACTTTCAGACATCCTACTGAATGGAAGTCAAAGTTCTTTTTTTATTTTTTCTGAAGATTAACCAATAAACCCTACTAATGAATGGGTTTTTGGAATATTTTCAATCTATTTTCCTGAAGTTTTCGTAAATAGTTTTGGTGAGTACATT</canonical>
            <polymorphic>ACCACCACGCGCAATTGCGGACCTGGGTTCGCAAACGTCGTGGTTCGCAACCGTCGCGTTTTCAACTGTCGGGTTCGCAAGTGTCGTGGTTCGCAAACGTCTAGGAGCCAAATTTCACACTGTCTCTTTTATTTCAAACGTTATGCCTCTCTTTCTTTTCATGATATGCCTTCTGAAGCTCCCAACCTGATATTTCATAATTTCTTCTATTACAGTGTTCATCTTCACTGCCGTCAATATTCCCTTATTCACCGGTTCTTTTCCCCTTTCCTTATCTCAAATCTTTTTTGCTTCAAAAAAAAAGTTTACATGAATTCGTCGATTTATCAAAGAAGATGCATAGCGCTAATAGTCAAAAGAAGATACAAGAGACGGTGTGACGGGTAGCTGAAGATATACAGATTAGTGCAATCAGCAGACAAAGTAGTTCTAATTTTGAGATCACTCTTTCATGCGAAGCTCACTTTTTTAATTATTTGTCTTATAGCGCAAACAGTAAYTTCAAATCTCCGGTGTTCTCAACTCCCCTTTCGCAATCGTTCAGTTTTTTTTTCTTTCCCTCTCGCCCTCTTGGGGTCCACTTCATCGTTCGGGCGACAGCTCGCGGAAAAGAGACTGTCGGGCGACCGCAAAAAATATACGTGGCCATCGACGCTGCGTCTCTTATTTTACCAATGAAATCGAATCTCTTACTATCACTTTGGCGTCTGCGTCTCCTCATCACATATTCCTTGGAGTTCCTGGCCACATCATAACCCCTCCATACAGCGACGACTGAGGTCTGATGTTTTTCGGTCCTCAGTTTTAGCTTCCCTTGAGGACTTCACTGAAAAGACGTCTCAATATTTAGGAACTTTCAGACATCCTACTGAATGGAAGTCAAAGTTCTTTTTTTATTTTTTCTGAAGATTAACCAATAAACCCTACTAATGAATGGGTTTTTGGAATATTTTCAATCTATTTTCCTGAAGTTTTCGTAAATAGTTTTGGTGAGTACATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 376 119</canonical_bands>
                <polymorphic_bands>624 376</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTAATTTTGAGATCACTCTTTCA</pcr_primer_p1>
		<pcr_primer_p2>CGATTTCATTGGTAAAATAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TCTAATTTTGAGATCACTCTTTCATGCGAAGCTCACTTTTTTAATTATTTGTCTTATAGCGCAAACAGTAACTTCAAATCTCCGGTGTTCTCAACTCCCCTTTCGCAATCGTTCAGTTTTTTTTTCTTTCCCTCTCGCCCTCTTGGGGTCCACTTCATCGTTCGGGCGACAGCTCGCGGAAAAGAGACTGTCGGGCGACCGCAAAAAATATACGTGGCCATCGACGCTGCGTCTCTTATTTTACCAATGAAATCG</canonical_amplicon>
		<polymorphic_amplicon>TCTAATTTTGAGATCACTCTTTCATGCGAAGCTCACTTTTTTAATTATTTGTCTTATAGCGCAAACAGTAAYTTCAAATCTCCGGTGTTCTCAACTCCCCTTTCGCAATCGTTCAGTTTTTTTTTCTTTCCCTCTCGCCCTCTTGGGGTCCACTTCATCGTTCGGGCGACAGCTCGCGGAAAAGAGACTGTCGGGCGACCGCAAAAAATATACGTGGCCATCGACGCTGCGTCTCTTATTTTACCAATGAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30921</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>100210</contig_pos>
        <strand></strand>
        <context>TTATTCTTTc[T/C]gaatttctga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGTGAGTATTTTAATTTTCAGAACCGGAAATTCAATTTACTTATTCTTTC</left_flank>
        <right_flank>GAATTTCTGATTTTCTCAACTTCTGAATTTTTAATTTTCTGAATTTCTGA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTCGTATCGTGGTCCGTTCCAATCGCACAGTACACATACACACGTTTGTACTCGCATTCTCACACATATACGCTCATCAGAGGACCGTACAGACGTTGTTTATTGCAGAACCAGCACATGTCTCAATTCCTTACACACCCTGTGTCTGTGATCTCTCGCACTCGATGTCCAGGTCTACGCCCCCCACCCCCTCCCCCTCCTACAAGAGAACTCCATTCCTCAGTTTTATCTTCTAATGACCCCTTGAATGAATAGAGGTCTAACTACTCAGGAACTTCCCAGACATCCTTCTGCATGGAATCGGAAAGTTCCTTTTATTTTTCTGAGCATTAACCTACATATCTACTTTTTGAAAACTTCAATAAACCTTAGAAATGGAAGGGTTTTTGGAATATTTTCAATATATTCTTCCGATATTCCCTATTCCTGCGAGTTGTGTTGGAGGATGGTGAGTATTTTAATTTTCAGAACCGGAAATTCAATTTACTTATTCTTTCTGAATTTCTGATTTTCTCAACTTCTGAATTTTTAATTTTCTGAATTTCTGAATCTCAAATTTCTAAATTACATAATTTGTAATTTTTTGGATCTTTCAGAAATCTCTGGAACCTTCCAGAGAAATGAATACCGAGACGGATCTAAAGCTCTCCAAGTTTTGGACATGGCCGATTTTTCTAGCCGTGGATTTTGTGTAGAGTTAGAAGACGAAAATGTTAAGGTATAGTATTTTTTTTTGTAAAATTTCAAAATCTCAAAAATTACAGTTCTACACAATTGAGCATGGACTTGTGGAGATGGAAAGAAATGACGAGCCAACGAGTCTTGACAAGTAATACGCGATACTTCCAGACGTGAGTTTTTGTCATTTATCTCGGTTACTGTAAGAGTAATTGAGAAGTTGTAATTGAGTAATTGAGAAGTAACAAAATGTTTTGCGTAATATGATAAACATTTTGTTCGTTAACAACTTTTTGATAGCTATCATGAGAGATGAGATA</canonical>
            <polymorphic>ATCTCGTATCGTGGTCCGTTCCAATCGCACAGTACACATACACACGTTTGTACTCGCATTCTCACACATATACGCTCATCAGAGGACCGTACAGACGTTGTTTATTGCAGAACCAGCACATGTCTCAATTCCTTACACACCCTGTGTCTGTGATCTCTCGCACTCGATGTCCAGGTCTACGCCCCCCACCCCCTCCCCCTCCTACAAGAGAACTCCATTCCTCAGTTTTATCTTCTAATGACCCCTTGAATGAATAGAGGTCTAACTACTCAGGAACTTCCCAGACATCCTTCTGCATGGAATCGGAAAGTTCCTTTTATTTTTCTGAGCATTAACCTACATATCTACTTTTTGAAAACTTCAATAAACCTTAGAAATGGAAGGGTTTTTGGAATATTTTCAATATATTCTTCCGATATTCCCTATTCCTGCGAGTTGTGTTGGAGGATGGTGAGTATTTTAATTTTCAGAACCGGAAATTCAATTTACTTATTCTTTCYGAATTTCTGATTTTCTCAACTTCTGAATTTTTAATTTTCTGAATTTCTGAATCTCAAATTTCTAAATTACATAATTTGTAATTTTTTGGATCTTTCAGAAATCTCTGGAACCTTCCAGAGAAATGAATACCGAGACGGATCTAAAGCTCTCCAAGTTTTGGACATGGCCGATTTTTCTAGCCGTGGATTTTGTGTAGAGTTAGAAGACGAAAATGTTAAGGTATAGTATTTTTTTTTGTAAAATTTCAAAATCTCAAAAATTACAGTTCTACACAATTGAGCATGGACTTGTGGAGATGGAAAGAAATGACGAGCCAACGAGTCTTGACAAGTAATACGCGATACTTCCAGACGTGAGTTTTTGTCATTTATCTCGGTTACTGTAAGAGTAATTGAGAAGTTGTAATTGAGTAATTGAGAAGTAACAAAATGTTTTGCGTAATATGATAAACATTTTGTTCGTTAACAACTTTTTGATAGCTATCATGAGAGATGAGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTCTTCCGATATTCCCTATTC</pcr_primer_p1>
		<pcr_primer_p2>AAACTTGGAGAGCTTTAGATCC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TATTCTTCCGATATTCCCTATTCCTGCGAGTTGTGTTGGAGGATGGTGAGTATTTTAATTTTCAGAACCGGAAATTCAATTTACTTATTCTTTCTGAATTTCTGATTTTCTCAACTTCTGAATTTTTAATTTTCTGAATTTCTGAATCTCAAATTTCTAAATTACATAATTTGTAATTTTTTGGATCTTTCAGAAATCTCTGGAACCTTCCAGAGAAATGAATACCGAGACGGATCTAAAGCTCTCCAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>TATTCTTCCGATATTCCCTATTCCTGCGAGTTGTGTTGGAGGATGGTGAGTATTTTAATTTTCAGAACCGGAAATTCAATTTACTTATTCTTTCYGAATTTCTGATTTTCTCAACTTCTGAATTTTTAATTTTCTGAATTTCTGAATCTCAAATTTCTAAATTACATAATTTGTAATTTTTTGGATCTTTCAGAAATCTCTGGAACCTTCCAGAGAAATGAATACCGAGACGGATCTAAAGCTCTCCAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30922</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>100517</contig_pos>
        <strand></strand>
        <context>ATGGAAAGAA[A/T]TGACGAGCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATTACAGTTCTACACAATTGAGCATGGACTTGTGGAGATGGAAAGAA</left_flank>
        <right_flank>TGACGAGCCAACGAGTCTTGACAAGTAATACGCGATACTTCCAGACGTGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTCCTTTTATTTTTCTGAGCATTAACCTACATATCTACTTTTTGAAAACTTCAATAAACCTTAGAAATGGAAGGGTTTTTGGAATATTTTCAATATATTCTTCCGATATTCCCTATTCCTGCGAGTTGTGTTGGAGGATGGTGAGTATTTTAATTTTCAGAACCGGAAATTCAATTTACTTATTCTTTCTGAATTTCTGATTTTCTCAACTTCTGAATTTTTAATTTTCTGAATTTCTGAATCTCAAATTTCTAAATTACATAATTTGTAATTTTTTGGATCTTTCAGAAATCTCTGGAACCTTCCAGAGAAATGAATACCGAGACGGATCTAAAGCTCTCCAAGTTTTGGACATGGCCGATTTTTCTAGCCGTGGATTTTGTGTAGAGTTAGAAGACGAAAATGTTAAGGTATAGTATTTTTTTTTGTAAAATTTCAAAATCTCAAAAATTACAGTTCTACACAATTGAGCATGGACTTGTGGAGATGGAAAGAAATGACGAGCCAACGAGTCTTGACAAGTAATACGCGATACTTCCAGACGTGAGTTTTTGTCATTTATCTCGGTTACTGTAAGAGTAATTGAGAAGTTGTAATTGAGTAATTGAGAAGTAACAAAATGTTTTGCGTAATATGATAAACATTTTGTTCGTTAACAACTTTTTGATAGCTATCATGAGAGATGAGATACAGGTCGTAAAGGTTGATTGATTTCCCGTGATTATGGTATCTGGGGTACTACATACCAATCCCCATAAGAGTTATCAAAAATGTTGTCAACTAACAAAATGTTAAGGATAGTGTGATAAACATTATATCAGTTGACAACTTTTTGACCGCTTGCAAAGGAATTGATATACAGCACCCCGGCTTTCGTATTCCTATTATAGTCAACTTTAAAGTCCAAAACAAGTGATCCAGGATTGTTCACCTTTTCTTAAAATTTGAGATTATACTAAACAAATATAGCGCTAAAATTTTGTAGTTGACAACTTTT</canonical>
            <polymorphic>AAGTTCCTTTTATTTTTCTGAGCATTAACCTACATATCTACTTTTTGAAAACTTCAATAAACCTTAGAAATGGAAGGGTTTTTGGAATATTTTCAATATATTCTTCCGATATTCCCTATTCCTGCGAGTTGTGTTGGAGGATGGTGAGTATTTTAATTTTCAGAACCGGAAATTCAATTTACTTATTCTTTCTGAATTTCTGATTTTCTCAACTTCTGAATTTTTAATTTTCTGAATTTCTGAATCTCAAATTTCTAAATTACATAATTTGTAATTTTTTGGATCTTTCAGAAATCTCTGGAACCTTCCAGAGAAATGAATACCGAGACGGATCTAAAGCTCTCCAAGTTTTGGACATGGCCGATTTTTCTAGCCGTGGATTTTGTGTAGAGTTAGAAGACGAAAATGTTAAGGTATAGTATTTTTTTTTGTAAAATTTCAAAATCTCAAAAATTACAGTTCTACACAATTGAGCATGGACTTGTGGAGATGGAAAGAAWTGACGAGCCAACGAGTCTTGACAAGTAATACGCGATACTTCCAGACGTGAGTTTTTGTCATTTATCTCGGTTACTGTAAGAGTAATTGAGAAGTTGTAATTGAGTAATTGAGAAGTAACAAAATGTTTTGCGTAATATGATAAACATTTTGTTCGTTAACAACTTTTTGATAGCTATCATGAGAGATGAGATACAGGTCGTAAAGGTTGATTGATTTCCCGTGATTATGGTATCTGGGGTACTACATACCAATCCCCATAAGAGTTATCAAAAATGTTGTCAACTAACAAAATGTTAAGGATAGTGTGATAAACATTATATCAGTTGACAACTTTTTGACCGCTTGCAAAGGAATTGATATACAGCACCCCGGCTTTCGTATTCCTATTATAGTCAACTTTAAAGTCCAAAACAAGTGATCCAGGATTGTTCACCTTTTCTTAAAATTTGAGATTATACTAAACAAATATAGCGCTAAAATTTTGTAGTTGACAACTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTCCAGAGAAATGAATACC</pcr_primer_p1>
		<pcr_primer_p2>AAAACTCACGTCTGGAAGTATC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CCTTCCAGAGAAATGAATACCGAGACGGATCTAAAGCTCTCCAAGTTTTGGACATGGCCGATTTTTCTAGCCGTGGATTTTGTGTAGAGTTAGAAGACGAAAATGTTAAGGTATAGTATTTTTTTTTGTAAAATTTCAAAATCTCAAAAATTACAGTTCTACACAATTGAGCATGGACTTGTGGAGATGGAAAGAAATGACGAGCCAACGAGTCTTGACAAGTAATACGCGATACTTCCAGACGTGAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>CCTTCCAGAGAAATGAATACCGAGACGGATCTAAAGCTCTCCAAGTTTTGGACATGGCCGATTTTTCTAGCCGTGGATTTTGTGTAGAGTTAGAAGACGAAAATGTTAAGGTATAGTATTTTTTTTTGTAAAATTTCAAAATCTCAAAAATTACAGTTCTACACAATTGAGCATGGACTTGTGGAGATGGAAAGAAWTGACGAGCCAACGAGTCTTGACAAGTAATACGCGATACTTCCAGACGTGAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30923</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>102047</contig_pos>
        <strand>+</strand>
        <context>TCACTAAAAT[A/G]AATTTCATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCAGCATTCTATAATTATAGTCATTTTTTCACAGCTTTTCACTAAAAT</left_flank>
        <right_flank>AATTTCATTGCTTCCAGTTTCTACCCGTTCAGACCACAACAAAAGAAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAGCCTCAAAAGACGAAATGTTTCGAATTCGGCAAATGCTTCTCCGCCGCGAAGAAGATCTTTGAGAGTGAGTTCCATTTTTCCTTTTTGTTTGGATTTATCGCTAATTTTCAGAGGGTCTGACCTCTTCAAAAATTTCAAAGACAAACATTTTGGAAACGATCCTGGAGGAGAGCATTATCCTGCGCTCCAAGGGTTCAATGGTCGGGAATAACACCTGGAAAAGATGCGGTAAGATTTTCAATGTTTTGTGGGGGTATTGCTCAGGCTATCACCAGTAATATCGATTTTTCAGGGATCGTCTTCGAGAAAAGTGATTGCAACGACGTCGACAGCGACTGATTTTCTTCATATTGCCTTTCCTACAATCTATCTAGACCTCTCCGATTTTAAATTTCACTAATTGTTTTCCTTTTCCTCATTTCAATACCTCGGATATTCACTATTTTTTCAGCATTCTATAATTATAGTCATTTTTTCACAGCTTTTCACTAAAATAAATTTCATTGCTTCCAGTTTCTACCCGTTCAGACCACAACAAAAGAAACATCAACACTTGGGCGAGAGAATACATATAAATAGGAGGTTTAGAGAAACTATGTGGGACCAGTGAAAACTAGAGAAAAGGAGGAACGGACCAAAGAACACACACGATGGGAGCAATAAAAGAGGATCAGGGGGAAGGAGGGGGGAGGAGGATCATTCAGGGGTACTGTAGTTTTAACGATGAGATATTCGGCTTAGCTTAACTTCGAGTCAATATATCTCAGTTCCTAAGAAAGATATCAAGAAGTTATCAACTTACATCCTGTAGGACATAAAAAACAGAAAATTTTGATAGATAAAAAAAAAACTATGTCTTTATAGCTGAATTATAGCCTAGTTTAGTTGGCTTGTAGTTATATTTTCAGCGGATGACCGGTAATTTTTTCAGAAGACTTCATGGACGATCGGAAACGTTTTTGGCATACTGTCTGTGGGATTATGCGAAAAAATTGA</canonical>
            <polymorphic>TAAGCCTCAAAAGACGAAATGTTTCGAATTCGGCAAATGCTTCTCCGCCGCGAAGAAGATCTTTGAGAGTGAGTTCCATTTTTCCTTTTTGTTTGGATTTATCGCTAATTTTCAGAGGGTCTGACCTCTTCAAAAATTTCAAAGACAAACATTTTGGAAACGATCCTGGAGGAGAGCATTATCCTGCGCTCCAAGGGTTCAATGGTCGGGAATAACACCTGGAAAAGATGCGGTAAGATTTTCAATGTTTTGTGGGGGTATTGCTCAGGCTATCACCAGTAATATCGATTTTTCAGGGATCGTCTTCGAGAAAAGTGATTGCAACGACGTCGACAGCGACTGATTTTCTTCATATTGCCTTTCCTACAATCTATCTAGACCTCTCCGATTTTAAATTTCACTAATTGTTTTCCTTTTCCTCATTTCAATACCTCGGATATTCACTATTTTTTCAGCATTCTATAATTATAGTCATTTTTTCACAGCTTTTCACTAAAATRAATTTCATTGCTTCCAGTTTCTACCCGTTCAGACCACAACAAAAGAAACATCAACACTTGGGCGAGAGAATACATATAAATAGGAGGTTTAGAGAAACTATGTGGGACCAGTGAAAACTAGAGAAAAGGAGGAACGGACCAAAGAACACACACGATGGGAGCAATAAAAGAGGATCAGGGGGAAGGAGGGGGGAGGAGGATCATTCAGGGGTACTGTAGTTTTAACGATGAGATATTCGGCTTAGCTTAACTTCGAGTCAATATATCTCAGTTCCTAAGAAAGATATCAAGAAGTTATCAACTTACATCCTGTAGGACATAAAAAACAGAAAATTTTGATAGATAAAAAAAAAACTATGTCTTTATAGCTGAATTATAGCCTAGTTTAGTTGGCTTGTAGTTATATTTTCAGCGGATGACCGGTAATTTTTTCAGAAGACTTCATGGACGATCGGAAACGTTTTTGGCATACTGTCTGTGGGATTATGCGAAAAAATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>331 259 169 108 107 26</canonical_bands>
                <polymorphic_bands>438 259 169 108 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCCGATTTTAAATTTCACTAA</pcr_primer_p1>
		<pcr_primer_p2>CCTCCTTTTCTCTAGTTTTCACT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTCCGATTTTAAATTTCACTAATTGTTTTCCTTTTCCTCATTTCAATACCTCGGATATTCACTATTTTTTCAGCATTCTATAATTATAGTCATTTTTTCACAGCTTTTCACTAAAATAAATTTCATTGCTTCCAGTTTCTACCCGTTCAGACCACAACAAAAGAAACATCAACACTTGGGCGAGAGAATACATATAAATAGGAGGTTTAGAGAAACTATGTGGGACCAGTGAAAACTAGAGAAAAGGAGG</canonical_amplicon>
		<polymorphic_amplicon>TCTCCGATTTTAAATTTCACTAATTGTTTTCCTTTTCCTCATTTCAATACCTCGGATATTCACTATTTTTTCAGCATTCTATAATTATAGTCATTTTTTCACAGCTTTTCACTAAAATRAATTTCATTGCTTCCAGTTTCTACCCGTTCAGACCACAACAAAAGAAACATCAACACTTGGGCGAGAGAATACATATAAATAGGAGGTTTAGAGAAACTATGTGGGACCAGTGAAAACTAGAGAAAAGGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30924</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>102392</contig_pos>
        <strand>+</strand>
        <context>TTTGATAGAT[A/T]AAAAAAAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTATCAACTTACATCCTGTAGGACATAAAAAACAGAAAATTTTGATAGAT</left_flank>
        <right_flank>AAAAAAAAACTATGTCTTTATAGCTGAATTATAGCCTAGTTTAGTTGGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTCATATTGCCTTTCCTACAATCTATCTAGACCTCTCCGATTTTAAATTTCACTAATTGTTTTCCTTTTCCTCATTTCAATACCTCGGATATTCACTATTTTTTCAGCATTCTATAATTATAGTCATTTTTTCACAGCTTTTCACTAAAATAAATTTCATTGCTTCCAGTTTCTACCCGTTCAGACCACAACAAAAGAAACATCAACACTTGGGCGAGAGAATACATATAAATAGGAGGTTTAGAGAAACTATGTGGGACCAGTGAAAACTAGAGAAAAGGAGGAACGGACCAAAGAACACACACGATGGGAGCAATAAAAGAGGATCAGGGGGAAGGAGGGGGGAGGAGGATCATTCAGGGGTACTGTAGTTTTAACGATGAGATATTCGGCTTAGCTTAACTTCGAGTCAATATATCTCAGTTCCTAAGAAAGATATCAAGAAGTTATCAACTTACATCCTGTAGGACATAAAAAACAGAAAATTTTGATAGATAAAAAAAAAACTATGTCTTTATAGCTGAATTATAGCCTAGTTTAGTTGGCTTGTAGTTATATTTTCAGCGGATGACCGGTAATTTTTTCAGAAGACTTCATGGACGATCGGAAACGTTTTTGGCATACTGTCTGTGGGATTATGCGAAAAAATTGATTCGTTGGCCGAATTAATTCAAAATGCAAGAGAATGGAAAAGAAACTGAAACGGCAGAGCCGTCTGTTCGTATTCACACCTGGTTCAAGATTCAAGAAAAAACAGATCCCATCAAACAATTCTGTCCCGCTTCTGCTCGTACCGACGAAAACATTCAATGGCCGGATATATCCGAAAATTCTGTTGACCTCACCATTGCAATGAGCAAGCTCGGCTGTTTGTTAGCATATCTCCAAATGCACAGTCAACAGGAAATAAGAACCAACAAATCCGTGGCTACATGAAGCAAGTTTTTTAAATTTAAATCTGCTTCTGTTGTCTCCTCAGGATTCCATTTTGCCGTGA</canonical>
            <polymorphic>TTCTTCATATTGCCTTTCCTACAATCTATCTAGACCTCTCCGATTTTAAATTTCACTAATTGTTTTCCTTTTCCTCATTTCAATACCTCGGATATTCACTATTTTTTCAGCATTCTATAATTATAGTCATTTTTTCACAGCTTTTCACTAAAATAAATTTCATTGCTTCCAGTTTCTACCCGTTCAGACCACAACAAAAGAAACATCAACACTTGGGCGAGAGAATACATATAAATAGGAGGTTTAGAGAAACTATGTGGGACCAGTGAAAACTAGAGAAAAGGAGGAACGGACCAAAGAACACACACGATGGGAGCAATAAAAGAGGATCAGGGGGAAGGAGGGGGGAGGAGGATCATTCAGGGGTACTGTAGTTTTAACGATGAGATATTCGGCTTAGCTTAACTTCGAGTCAATATATCTCAGTTCCTAAGAAAGATATCAAGAAGTTATCAACTTACATCCTGTAGGACATAAAAAACAGAAAATTTTGATAGATWAAAAAAAAACTATGTCTTTATAGCTGAATTATAGCCTAGTTTAGTTGGCTTGTAGTTATATTTTCAGCGGATGACCGGTAATTTTTTCAGAAGACTTCATGGACGATCGGAAACGTTTTTGGCATACTGTCTGTGGGATTATGCGAAAAAATTGATTCGTTGGCCGAATTAATTCAAAATGCAAGAGAATGGAAAAGAAACTGAAACGGCAGAGCCGTCTGTTCGTATTCACACCTGGTTCAAGATTCAAGAAAAAACAGATCCCATCAAACAATTCTGTCCCGCTTCTGCTCGTACCGACGAAAACATTCAATGGCCGGATATATCCGAAAATTCTGTTGACCTCACCATTGCAATGAGCAAGCTCGGCTGTTTGTTAGCATATCTCCAAATGCACAGTCAACAGGAAATAAGAACCAACAAATCCGTGGCTACATGAAGCAAGTTTTTTAAATTTAAATCTGCTTCTGTTGTCTCCTCAGGATTCCATTTTGCCGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCAGGGGTACTGTAGTTTTA</pcr_primer_p1>
		<pcr_primer_p2>GTCCATGAAGTCTTCTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CATTCAGGGGTACTGTAGTTTTAACGATGAGATATTCGGCTTAGCTTAACTTCGAGTCAATATATCTCAGTTCCTAAGAAAGATATCAAGAAGTTATCAACTTACATCCTGTAGGACATAAAAAACAGAAAATTTTGATAGATAAAAAAAAAACTATGTCTTTATAGCTGAATTATAGCCTAGTTTAGTTGGCTTGTAGTTATATTTTCAGCGGATGACCGGTAATTTTTTCAGAAGACTTCATGGAC</canonical_amplicon>
		<polymorphic_amplicon>CATTCAGGGGTACTGTAGTTTTAACGATGAGATATTCGGCTTAGCTTAACTTCGAGTCAATATATCTCAGTTCCTAAGAAAGATATCAAGAAGTTATCAACTTACATCCTGTAGGACATAAAAAACAGAAAATTTTGATAGATWAAAAAAAAACTATGTCTTTATAGCTGAATTATAGCCTAGTTTAGTTGGCTTGTAGTTATATTTTCAGCGGATGACCGGTAATTTTTTCAGAAGACTTCATGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30925</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>107574</contig_pos>
        <strand>+</strand>
        <context>CTCTACTTGC[G/T]AAAAAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGTACATGTTCTGTCATTCACAGTTTTGGCTATGCTCTACTCTACTTGC</left_flank>
        <right_flank>AAAAAAAAAACTAATTATGCATTTTAAACGCAAAGCTCATTTTCGATACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAGTCCCTGAAAGCGCACTGCCTCCATATTGTGCTGGAAATCATGGACACAGAGAGCCCCAGTGACTGGACATCGGAGCATTTGCGATCGGATCAAATTGACCATGCTGCATATAACGTGGTCGTGTTAAACTGGATCCGCCAGTTTTACAAAAGTACAGCTTATTGTGAGTTTGTAGGGATTTTGTCTATTCCAATGGTTTCTTTTTTCAGAACAGGGTCGCAACGAATTATAGCGAGTTTATAGCTATTCAATGTTTCTCACAGATTTTTGTTATAAATTTTCAAAATAGCTTACAATTTTTCAAAGGCAGTCTTGACTTTGGAATTAACTATATCGGTTTCTTATGAAAATCAAAAAAAAATTCCATATGAAAATATGTTTCAAGAGATTTTCAGGTAAATAAAAACTGTATCATTATTTATCTCTCACAAAAAAGGTTTTTCAGATGTACATGTTCTGTCATTCACAGTTTTGGCTATGCTCTACTCTACTTGCAAAAAAAAAAACTAATTATGCATTTTAAACGCAAAGCTCATTTTCGATACCCATTTGACAGCTTTTCCATTCATTTTTGCAAATCTAAAAATTAATAAGTGAGTTGATATTCAACCAACAAAAAAAGCAAGAAGAAAAATATATGTTTTCAGGTTTTACATAATGTCATCTACACTTTTCCACACTTCATTCACCTGCAACCCTATTCATAATTTTCACAAATTATCTAATTGTTTAAAAAAATACTTCCACTTTTCTATTTCCTTTTTTTGTATTTCTTTTTTCACCTTCTTTCACTTTTGTGCAACTTTTTTCATAAATATTTGAAAATTGAAACTGGTCAAAAGGTTTCCGACAACTTGGATCAATTCTACAAAGAGTGTTTATAAAAAGTCACAGTTCGCATTAACGAAGATTTTTGAGAAAAATCAGTATTTCCAAAAGTTGTGGAATGAACGAAAACTTTGAAAATTTATATAATTCAATTTTGTTGAATGCAGA</canonical>
            <polymorphic>CGAGTCCCTGAAAGCGCACTGCCTCCATATTGTGCTGGAAATCATGGACACAGAGAGCCCCAGTGACTGGACATCGGAGCATTTGCGATCGGATCAAATTGACCATGCTGCATATAACGTGGTCGTGTTAAACTGGATCCGCCAGTTTTACAAAAGTACAGCTTATTGTGAGTTTGTAGGGATTTTGTCTATTCCAATGGTTTCTTTTTTCAGAACAGGGTCGCAACGAATTATAGCGAGTTTATAGCTATTCAATGTTTCTCACAGATTTTTGTTATAAATTTTCAAAATAGCTTACAATTTTTCAAAGGCAGTCTTGACTTTGGAATTAACTATATCGGTTTCTTATGAAAATCAAAAAAAAATTCCATATGAAAATATGTTTCAAGAGATTTTCAGGTAAATAAAAACTGTATCATTATTTATCTCTCACAAAAAAGGTTTTTCAGATGTACATGTTCTGTCATTCACAGTTTTGGCTATGCTCTACTCTACTTGCKAAAAAAAAAACTAATTATGCATTTTAAACGCAAAGCTCATTTTCGATACCCATTTGACAGCTTTTCCATTCATTTTTGCAAATCTAAAAATTAATAAGTGAGTTGATATTCAACCAACAAAAAAAGCAAGAAGAAAAATATATGTTTTCAGGTTTTACATAATGTCATCTACACTTTTCCACACTTCATTCACCTGCAACCCTATTCATAATTTTCACAAATTATCTAATTGTTTAAAAAAATACTTCCACTTTTCTATTTCCTTTTTTTGTATTTCTTTTTTCACCTTCTTTCACTTTTGTGCAACTTTTTTCATAAATATTTGAAAATTGAAACTGGTCAAAAGGTTTCCGACAACTTGGATCAATTCTACAAAGAGTGTTTATAAAAAGTCACAGTTCGCATTAACGAAGATTTTTGAGAAAAATCAGTATTTCCAAAAGTTGTGGAATGAACGAAAACTTTGAAAATTTATATAATTCAATTTTGTTGAATGCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>388 193 118 110 107 59 21 4</canonical_bands>
                <polymorphic_bands>409 193 118 110 107 59 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAGATGTACATGTTCTGTCATT</pcr_primer_p1>
		<pcr_primer_p2>GAATGAAGTGTGGAAAAGTGTAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCAGATGTACATGTTCTGTCATTCACAGTTTTGGCTATGCTCTACTCTACTTGCAAAAAAAAAAACTAATTATGCATTTTAAACGCAAAGCTCATTTTCGATACCCATTTGACAGCTTTTCCATTCATTTTTGCAAATCTAAAAATTAATAAGTGAGTTGATATTCAACCAACAAAAAAAGCAAGAAGAAAAATATATGTTTTCAGGTTTTACATAATGTCATCTACACTTTTCCACACTTCATTC</canonical_amplicon>
		<polymorphic_amplicon>TCAGATGTACATGTTCTGTCATTCACAGTTTTGGCTATGCTCTACTCTACTTGCKAAAAAAAAAACTAATTATGCATTTTAAACGCAAAGCTCATTTTCGATACCCATTTGACAGCTTTTCCATTCATTTTTGCAAATCTAAAAATTAATAAGTGAGTTGATATTCAACCAACAAAAAAAGCAAGAAGAAAAATATATGTTTTCAGGTTTTACATAATGTCATCTACACTTTTCCACACTTCATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30926</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>107937</contig_pos>
        <strand>+</strand>
        <context>GACAACTTGG[A/C]TCAATTCTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCATAAATATTTGAAAATTGAAACTGGTCAAAAGGTTTCCGACAACTTGG</left_flank>
        <right_flank>TCAATTCTACAAAGAGTGTTTATAAAAAGTCACAGTTCGCATTAACGAAG</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTCCATATGAAAATATGTTTCAAGAGATTTTCAGGTAAATAAAAACTGTATCATTATTTATCTCTCACAAAAAAGGTTTTTCAGATGTACATGTTCTGTCATTCACAGTTTTGGCTATGCTCTACTCTACTTGCAAAAAAAAAAACTAATTATGCATTTTAAACGCAAAGCTCATTTTCGATACCCATTTGACAGCTTTTCCATTCATTTTTGCAAATCTAAAAATTAATAAGTGAGTTGATATTCAACCAACAAAAAAAGCAAGAAGAAAAATATATGTTTTCAGGTTTTACATAATGTCATCTACACTTTTCCACACTTCATTCACCTGCAACCCTATTCATAATTTTCACAAATTATCTAATTGTTTAAAAAAATACTTCCACTTTTCTATTTCCTTTTTTTGTATTTCTTTTTTCACCTTCTTTCACTTTTGTGCAACTTTTTTCATAAATATTTGAAAATTGAAACTGGTCAAAAGGTTTCCGACAACTTGGATCAATTCTACAAAGAGTGTTTATAAAAAGTCACAGTTCGCATTAACGAAGATTTTTGAGAAAAATCAGTATTTCCAAAAGTTGTGGAATGAACGAAAACTTTGAAAATTTATATAATTCAATTTTGTTGAATGCAGAAAAAATAGACGCCTAAAAACATGTGATAGAAGGGCCAACTAACTCTTAACTTTAATCCAACTTTTCTCAATCACTCTCTAACAATGTGAGAAAAACAAGAAACTGCGAAAAAAGTATTGGAGAAGGTTTTCTTTTGTTTCTGTGATTATATTATATATAGAATACGTTGTCAATTGATACTTCCTTTATCATAATATCAGAAGTCAGACCAATACAAACTGGCAATAAAAATACTACTAATGTCACCCACCAATGAAAAGTAGCAATGAAAAGTCAAAGGTTCCTGGGTTTTTTGAAGAATATGACTCATTAAAAACAAAAAAAAAAAGAATATATATTTTTGTTTTTTTTTTGTATACATTA</canonical>
            <polymorphic>AATTCCATATGAAAATATGTTTCAAGAGATTTTCAGGTAAATAAAAACTGTATCATTATTTATCTCTCACAAAAAAGGTTTTTCAGATGTACATGTTCTGTCATTCACAGTTTTGGCTATGCTCTACTCTACTTGCAAAAAAAAAAACTAATTATGCATTTTAAACGCAAAGCTCATTTTCGATACCCATTTGACAGCTTTTCCATTCATTTTTGCAAATCTAAAAATTAATAAGTGAGTTGATATTCAACCAACAAAAAAAGCAAGAAGAAAAATATATGTTTTCAGGTTTTACATAATGTCATCTACACTTTTCCACACTTCATTCACCTGCAACCCTATTCATAATTTTCACAAATTATCTAATTGTTTAAAAAAATACTTCCACTTTTCTATTTCCTTTTTTTGTATTTCTTTTTTCACCTTCTTTCACTTTTGTGCAACTTTTTTCATAAATATTTGAAAATTGAAACTGGTCAAAAGGTTTCCGACAACTTGGMTCAATTCTACAAAGAGTGTTTATAAAAAGTCACAGTTCGCATTAACGAAGATTTTTGAGAAAAATCAGTATTTCCAAAAGTTGTGGAATGAACGAAAACTTTGAAAATTTATATAATTCAATTTTGTTGAATGCAGAAAAAATAGACGCCTAAAAACATGTGATAGAAGGGCCAACTAACTCTTAACTTTAATCCAACTTTTCTCAATCACTCTCTAACAATGTGAGAAAAACAAGAAACTGCGAAAAAAGTATTGGAGAAGGTTTTCTTTTGTTTCTGTGATTATATTATATATAGAATACGTTGTCAATTGATACTTCCTTTATCATAATATCAGAAGTCAGACCAATACAAACTGGCAATAAAAATACTACTAATGTCACCCACCAATGAAAAGTAGCAATGAAAAGTCAAAGGTTCCTGGGTTTTTTGAAGAATATGACTCATTAAAAACAAAAAAAAAAAGAATATATATTTTTGTTTTTTTTTTGTATACATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACCCTATTCATAATTTTCACA</pcr_primer_p1>
		<pcr_primer_p2>TTTTGGAAATACTGATTTTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAACCCTATTCATAATTTTCACAAATTATCTAATTGTTTAAAAAAATACTTCCACTTTTCTATTTCCTTTTTTTGTATTTCTTTTTTCACCTTCTTTCACTTTTGTGCAACTTTTTTCATAAATATTTGAAAATTGAAACTGGTCAAAAGGTTTCCGACAACTTGGATCAATTCTACAAAGAGTGTTTATAAAAAGTCACAGTTCGCATTAACGAAGATTTTTGAGAAAAATCAGTATTTCCAAAA</canonical_amplicon>
		<polymorphic_amplicon>CAACCCTATTCATAATTTTCACAAATTATCTAATTGTTTAAAAAAATACTTCCACTTTTCTATTTCCTTTTTTTGTATTTCTTTTTTCACCTTCTTTCACTTTTGTGCAACTTTTTTCATAAATATTTGAAAATTGAAACTGGTCAAAAGGTTTCCGACAACTTGGMTCAATTCTACAAAGAGTGTTTATAAAAAGTCACAGTTCGCATTAACGAAGATTTTTGAGAAAAATCAGTATTTCCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30927</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>116772</contig_pos>
        <strand></strand>
        <context>GCTTAGTGGT[A/T]TTGAGAGATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CACATAAAATCCTCGCGAAAGAAAACAACAAACTTCTCCAGCTTAGTGGT</left_flank>
        <right_flank>TTGAGAGATGTTTCTTTACTTTCAAATGTGGTGTTTTTGACATGTTTCAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGACAAAAATATACTTTTTTTTCAATTCTGTTCAAAATTTTCTCAATTCAATTTCTACTTACCGTAAACACTCTAATAAAACGCCATCCGAATCGTCAAATTGGAGCCCATGCACCTCATTTTCTGTTGAAGATATCAAAAAGTAGTTAACCAATAAAATGTTGTCGATTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAGAGTAGAAGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTATTTCAGAAAAAAACTGTTCATTCGAGTGTTCGGAAAACTTTGTCGAGAGAAAGGAGGTTTGCTTGGTATGGTGGCCTTCACACGTGATGTTGCATGTACTAGATTATACCAAATCAAATACGATTTAAAAGCTGTTTTAGATTAAATTGTTTTAAGACGTTCAGAAGTAGCCAGAAATTCACGAAAAAAAATTGAACCCACATAAAATCCTCGCGAAAGAAAACAACAAACTTCTCCAGCTTAGTGGTATTGAGAGATGTTTCTTTACTTTCAAATGTGGTGTTTTTGACATGTTTCATACTTTCAAATATTTTTCTAATAGAGCACCTGATACTAGCATCTTGAGTTCAATTACCTAAATTTCTTTTGATAAATTAGAACAGTAAATGAAAGCCGAGCAAAAAATGCAAGTATTGCTGTGGCGTTTTATTAAAAAAAATAGGTATAATATATATCTTCAACTACTTACCAGATTGCATATTTGATCAAATTTTTAGCAAACATTCTTCCGTTCAGTTTTTCACGTTCCTGAAAACAAAATATTGAAATTAACAATTGAAAAATGTTAAAAGATGAATGTTCCAGCAGTTTTCGCTGCTTGAAATGCGAGTAAAAAACGTAAGGTTTGCGATAAGTTAGTTGTGTTGGAGGTCTAGCTGAGTCGAGTGAAAATTATCAGTTGTGCCTGGGGGTGGAGTCGACGGCCTGGGGGAGAGCTCCCTCCTCTCTCTCTCTCTCTCTCTCTCTCT</canonical>
            <polymorphic>CTGGACAAAAATATACTTTTTTTTCAATTCTGTTCAAAATTTTCTCAATTCAATTTCTACTTACCGTAAACACTCTAATAAAACGCCATCCGAATCGTCAAATTGGAGCCCATGCACCTCATTTTCTGTTGAAGATATCAAAAAGTAGTTAACCAATAAAATGTTGTCGATTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAGAGTAGAAGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTATTTCAGAAAAAAACTGTTCATTCGAGTGTTCGGAAAACTTTGTCGAGAGAAAGGAGGTTTGCTTGGTATGGTGGCCTTCACACGTGATGTTGCATGTACTAGATTATACCAAATCAAATACGATTTAAAAGCTGTTTTAGATTAAATTGTTTTAAGACGTTCAGAAGTAGCCAGAAATTCACGAAAAAAAATTGAACCCACATAAAATCCTCGCGAAAGAAAACAACAAACTTCTCCAGCTTAGTGGTWTTGAGAGATGTTTCTTTACTTTCAAATGTGGTGTTTTTGACATGTTTCATACTTTCAAATATTTTTCTAATAGAGCACCTGATACTAGCATCTTGAGTTCAATTACCTAAATTTCTTTTGATAAATTAGAACAGTAAATGAAAGCCGAGCAAAAAATGCAAGTATTGCTGTGGCGTTTTATTAAAAAAAATAGGTATAATATATATCTTCAACTACTTACCAGATTGCATATTTGATCAAATTTTTAGCAAACATTCTTCCGTTCAGTTTTTCACGTTCCTGAAAACAAAATATTGAAATTAACAATTGAAAAATGTTAAAAGATGAATGTTCCAGCAGTTTTCGCTGCTTGAAATGCGAGTAAAAAACGTAAGGTTTGCGATAAGTTAGTTGTGTTGGAGGTCTAGCTGAGTCGAGTGAAAATTATCAGTTGTGCCTGGGGGTGGAGTCGACGGCCTGGGGGAGAGCTCCCTCCTCTCTCTCTCTCTCTCTCTCTCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAATCAAATACGATTTAAAAG</pcr_primer_p1>
		<pcr_primer_p2>AGGTAATTGAACTCAAGATGCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCAAATCAAATACGATTTAAAAGCTGTTTTAGATTAAATTGTTTTAAGACGTTCAGAAGTAGCCAGAAATTCACGAAAAAAAATTGAACCCACATAAAATCCTCGCGAAAGAAAACAACAAACTTCTCCAGCTTAGTGGTATTGAGAGATGTTTCTTTACTTTCAAATGTGGTGTTTTTGACATGTTTCATACTTTCAAATATTTTTCTAATAGAGCACCTGATACTAGCATCTTGAGTTCAATTACCT</canonical_amplicon>
		<polymorphic_amplicon>CCAAATCAAATACGATTTAAAAGCTGTTTTAGATTAAATTGTTTTAAGACGTTCAGAAGTAGCCAGAAATTCACGAAAAAAAATTGAACCCACATAAAATCCTCGCGAAAGAAAACAACAAACTTCTCCAGCTTAGTGGTWTTGAGAGATGTTTCTTTACTTTCAAATGTGGTGTTTTTGACATGTTTCATACTTTCAAATATTTTTCTAATAGAGCACCTGATACTAGCATCTTGAGTTCAATTACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30928</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>116977</contig_pos>
        <strand></strand>
        <context>TATAATATAT[A/T]TCTTCAACTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATGCAAGTATTGCTGTGGCGTTTTATTAAAAAAAATAGGTATAATATAT</left_flank>
        <right_flank>TCTTCAACTACTTACCAGATTGCATATTTGATCAAATTTTTAGCAAACAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGAGTAGAAGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTATTTCAGAAAAAAACTGTTCATTCGAGTGTTCGGAAAACTTTGTCGAGAGAAAGGAGGTTTGCTTGGTATGGTGGCCTTCACACGTGATGTTGCATGTACTAGATTATACCAAATCAAATACGATTTAAAAGCTGTTTTAGATTAAATTGTTTTAAGACGTTCAGAAGTAGCCAGAAATTCACGAAAAAAAATTGAACCCACATAAAATCCTCGCGAAAGAAAACAACAAACTTCTCCAGCTTAGTGGTATTGAGAGATGTTTCTTTACTTTCAAATGTGGTGTTTTTGACATGTTTCATACTTTCAAATATTTTTCTAATAGAGCACCTGATACTAGCATCTTGAGTTCAATTACCTAAATTTCTTTTGATAAATTAGAACAGTAAATGAAAGCCGAGCAAAAAATGCAAGTATTGCTGTGGCGTTTTATTAAAAAAAATAGGTATAATATATATCTTCAACTACTTACCAGATTGCATATTTGATCAAATTTTTAGCAAACATTCTTCCGTTCAGTTTTTCACGTTCCTGAAAACAAAATATTGAAATTAACAATTGAAAAATGTTAAAAGATGAATGTTCCAGCAGTTTTCGCTGCTTGAAATGCGAGTAAAAAACGTAAGGTTTGCGATAAGTTAGTTGTGTTGGAGGTCTAGCTGAGTCGAGTGAAAATTATCAGTTGTGCCTGGGGGTGGAGTCGACGGCCTGGGGGAGAGCTCCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCCTAGAAAAAAAACCGTAAACAAATAATGTCACGGAAAGGAATTAGAGAAAACAAGAAAACCGTCTGAAACATTTAAGATTCTAGTAGAGCAGGACCCTGGATGTGCTGGCATTAGTATTTGCCTCAAAATGTTGGAAAAATAATAAAAAGAAGCTAGTCCAACGAGTGGAAATAGACTCCTGTCATTAGC</canonical>
            <polymorphic>TCAGAGTAGAAGGTCCGGGTGGCGTTCTATTAGAGTGTTTACGGTATTTCAGAAAAAAACTGTTCATTCGAGTGTTCGGAAAACTTTGTCGAGAGAAAGGAGGTTTGCTTGGTATGGTGGCCTTCACACGTGATGTTGCATGTACTAGATTATACCAAATCAAATACGATTTAAAAGCTGTTTTAGATTAAATTGTTTTAAGACGTTCAGAAGTAGCCAGAAATTCACGAAAAAAAATTGAACCCACATAAAATCCTCGCGAAAGAAAACAACAAACTTCTCCAGCTTAGTGGTATTGAGAGATGTTTCTTTACTTTCAAATGTGGTGTTTTTGACATGTTTCATACTTTCAAATATTTTTCTAATAGAGCACCTGATACTAGCATCTTGAGTTCAATTACCTAAATTTCTTTTGATAAATTAGAACAGTAAATGAAAGCCGAGCAAAAAATGCAAGTATTGCTGTGGCGTTTTATTAAAAAAAATAGGTATAATATATWTCTTCAACTACTTACCAGATTGCATATTTGATCAAATTTTTAGCAAACATTCTTCCGTTCAGTTTTTCACGTTCCTGAAAACAAAATATTGAAATTAACAATTGAAAAATGTTAAAAGATGAATGTTCCAGCAGTTTTCGCTGCTTGAAATGCGAGTAAAAAACGTAAGGTTTGCGATAAGTTAGTTGTGTTGGAGGTCTAGCTGAGTCGAGTGAAAATTATCAGTTGTGCCTGGGGGTGGAGTCGACGGCCTGGGGGAGAGCTCCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCCTAGAAAAAAAACCGTAAACAAATAATGTCACGGAAAGGAATTAGAGAAAACAAGAAAACCGTCTGAAACATTTAAGATTCTAGTAGAGCAGGACCCTGGATGTGCTGGCATTAGTATTTGCCTCAAAATGTTGGAAAAATAATAAAAAGAAGCTAGTCCAACGAGTGGAAATAGACTCCTGTCATTAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGCAAGTATTGCTGTG</pcr_primer_p1>
		<pcr_primer_p2>AACACAACTAACTTATCGCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGCAAGTATTGCTGTGGCGTTTTATTAAAAAAAATAGGTATAATATATATCTTCAACTACTTACCAGATTGCATATTTGATCAAATTTTTAGCAAACATTCTTCCGTTCAGTTTTTCACGTTCCTGAAAACAAAATATTGAAATTAACAATTGAAAAATGTTAAAAGATGAATGTTCCAGCAGTTTTCGCTGCTTGAAATGCGAGTAAAAAACGTAAGGTTTGCGATAAGTTAGTTGTGTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGCAAGTATTGCTGTGGCGTTTTATTAAAAAAAATAGGTATAATATATWTCTTCAACTACTTACCAGATTGCATATTTGATCAAATTTTTAGCAAACATTCTTCCGTTCAGTTTTTCACGTTCCTGAAAACAAAATATTGAAATTAACAATTGAAAAATGTTAAAAGATGAATGTTCCAGCAGTTTTCGCTGCTTGAAATGCGAGTAAAAAACGTAAGGTTTGCGATAAGTTAGTTGTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30929</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>117090</contig_pos>
        <strand></strand>
        <context>TGAAAAATGT[T/G]AAAAGATGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTTTTCACGTTCCTGAAAACAAAATATTGAAATTAACAATTGAAAAATGT</left_flank>
        <right_flank>AAAAGATGAATGTTCCAGCAGTTTTCGCTGCTTGAAATGCGAGTAAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGTGGCCTTCACACGTGATGTTGCATGTACTAGATTATACCAAATCAAATACGATTTAAAAGCTGTTTTAGATTAAATTGTTTTAAGACGTTCAGAAGTAGCCAGAAATTCACGAAAAAAAATTGAACCCACATAAAATCCTCGCGAAAGAAAACAACAAACTTCTCCAGCTTAGTGGTATTGAGAGATGTTTCTTTACTTTCAAATGTGGTGTTTTTGACATGTTTCATACTTTCAAATATTTTTCTAATAGAGCACCTGATACTAGCATCTTGAGTTCAATTACCTAAATTTCTTTTGATAAATTAGAACAGTAAATGAAAGCCGAGCAAAAAATGCAAGTATTGCTGTGGCGTTTTATTAAAAAAAATAGGTATAATATATATCTTCAACTACTTACCAGATTGCATATTTGATCAAATTTTTAGCAAACATTCTTCCGTTCAGTTTTTCACGTTCCTGAAAACAAAATATTGAAATTAACAATTGAAAAATGTTAAAAGATGAATGTTCCAGCAGTTTTCGCTGCTTGAAATGCGAGTAAAAAACGTAAGGTTTGCGATAAGTTAGTTGTGTTGGAGGTCTAGCTGAGTCGAGTGAAAATTATCAGTTGTGCCTGGGGGTGGAGTCGACGGCCTGGGGGAGAGCTCCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCCTAGAAAAAAAACCGTAAACAAATAATGTCACGGAAAGGAATTAGAGAAAACAAGAAAACCGTCTGAAACATTTAAGATTCTAGTAGAGCAGGACCCTGGATGTGCTGGCATTAGTATTTGCCTCAAAATGTTGGAAAAATAATAAAAAGAAGCTAGTCCAACGAGTGGAAATAGACTCCTGTCATTAGCTAAAGACAGTTATCTGAAAAAGAAGTTTTTTGGTTTCGATTTTATTTTTTCCAAGAGTTTAAAAACCCACAATTTCCATATGGAGATATATCATAATTTGAACAAAAATGAGT</canonical>
            <polymorphic>ATGGTGGCCTTCACACGTGATGTTGCATGTACTAGATTATACCAAATCAAATACGATTTAAAAGCTGTTTTAGATTAAATTGTTTTAAGACGTTCAGAAGTAGCCAGAAATTCACGAAAAAAAATTGAACCCACATAAAATCCTCGCGAAAGAAAACAACAAACTTCTCCAGCTTAGTGGTATTGAGAGATGTTTCTTTACTTTCAAATGTGGTGTTTTTGACATGTTTCATACTTTCAAATATTTTTCTAATAGAGCACCTGATACTAGCATCTTGAGTTCAATTACCTAAATTTCTTTTGATAAATTAGAACAGTAAATGAAAGCCGAGCAAAAAATGCAAGTATTGCTGTGGCGTTTTATTAAAAAAAATAGGTATAATATATATCTTCAACTACTTACCAGATTGCATATTTGATCAAATTTTTAGCAAACATTCTTCCGTTCAGTTTTTCACGTTCCTGAAAACAAAATATTGAAATTAACAATTGAAAAATGTKAAAAGATGAATGTTCCAGCAGTTTTCGCTGCTTGAAATGCGAGTAAAAAACGTAAGGTTTGCGATAAGTTAGTTGTGTTGGAGGTCTAGCTGAGTCGAGTGAAAATTATCAGTTGTGCCTGGGGGTGGAGTCGACGGCCTGGGGGAGAGCTCCCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCCTAGAAAAAAAACCGTAAACAAATAATGTCACGGAAAGGAATTAGAGAAAACAAGAAAACCGTCTGAAACATTTAAGATTCTAGTAGAGCAGGACCCTGGATGTGCTGGCATTAGTATTTGCCTCAAAATGTTGGAAAAATAATAAAAAGAAGCTAGTCCAACGAGTGGAAATAGACTCCTGTCATTAGCTAAAGACAGTTATCTGAAAAAGAAGTTTTTTGGTTTCGATTTTATTTTTTCCAAGAGTTTAAAAACCCACAATTTCCATATGGAGATATATCATAATTTGAACAAAAATGAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>278 271 176 119 58 54 17 17 10</canonical_bands>
                <polymorphic_bands>288 278 176 119 58 54 17 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGCAAGTATTGCTGTG</pcr_primer_p1>
		<pcr_primer_p2>AACACAACTAACTTATCGCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGCAAGTATTGCTGTGGCGTTTTATTAAAAAAAATAGGTATAATATATATCTTCAACTACTTACCAGATTGCATATTTGATCAAATTTTTAGCAAACATTCTTCCGTTCAGTTTTTCACGTTCCTGAAAACAAAATATTGAAATTAACAATTGAAAAATGTTAAAAGATGAATGTTCCAGCAGTTTTCGCTGCTTGAAATGCGAGTAAAAAACGTAAGGTTTGCGATAAGTTAGTTGTGTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGCAAGTATTGCTGTGGCGTTTTATTAAAAAAAATAGGTATAATATATATCTTCAACTACTTACCAGATTGCATATTTGATCAAATTTTTAGCAAACATTCTTCCGTTCAGTTTTTCACGTTCCTGAAAACAAAATATTGAAATTAACAATTGAAAAATGTKAAAAGATGAATGTTCCAGCAGTTTTCGCTGCTTGAAATGCGAGTAAAAAACGTAAGGTTTGCGATAAGTTAGTTGTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30930</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>123410</contig_pos>
        <strand>+</strand>
        <context>AATGTTTCCT[G/T]CAACCACATG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTCATTAAAACTAAGAGTTCATTGTTTCAGATTGCTTCAAATGTTTCCT</left_flank>
        <right_flank>CAACCACATGTTCCGCCTCAAACACCTGTTTTTCACGCCAATGCTGGTGC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGACTTCGACAACAAATAATGTTCTTGGAGTCAAAGAATATAAGGTTCATAGGTAAGATTTTGGTTTGCACCAAAAACAGCATACTCCGTGACTCCGCAATAACTATCCATTTCACTAGATCTCTTGCACACTCTAGTCATCCCTCTAATCTGTCTCAGCCATCTCGGACCTTTTCCTCTCGATACGCGCGCACATCTTCCCTCGCCCGTTTTCGTCTTCAACACAGCGAGGGCGATTTGTTGTATTGGTCGACGTTCTATGGTCGCGTGCAGAGGGGCCACTCTCCCAACACACGAACGGACTCTCTTTCATTATAAACGGCATAGCTCGTGCATTCCCAAGCGAAGAACACCCTACCACCACCCCTCTCGACGCGTTTGACACGAATGTCGCAGATTTCGTGCGCGTAGTCAATGTCCCTGATTTTCTTCCATCAAATCCGATTTTCTCATTAAAACTAAGAGTTCATTGTTTCAGATTGCTTCAAATGTTTCCTTCAACCACATGTTCCGCCTCAAACACCTGTTTTTCACGCCAATGCTGGTGCTGCTACAAATTTTCTGTGAGTTTTTCATTTTTTGGAAGGAAAAATCAATTTCAAACATGAAAATTCTTTACATGATAATCACTCTGATGAAAAACAATTGCTTCTCCTTCTATAATGAAGAGACAAGTCCAATATTAGCTCGAAACCAAATTTTCAGTATTTCAGAACCCTACTCCACCCATTACACTGGACCAAACATTAATATTTTTTGGCGGAATGTCTAGTGAAGGTTACACGATATCCACCAAATGCAGCTGCAATATTTGAGCATCCATGGTTCAACAGTGCTCAATCGAAGAAAAAGATGATGATGGATCTTCTCATAGAAATGAACGCTGATGCTCAAGAAAAGCTGGTGACTGATGGAGATGAGGAATCGGTGACAGAATCATACGAAAACTCACAGACGTGAAGACACTCAGAGCTCAGCTTCCGAAAGCCGCCAACCAG</canonical>
            <polymorphic>AGTGACTTCGACAACAAATAATGTTCTTGGAGTCAAAGAATATAAGGTTCATAGGTAAGATTTTGGTTTGCACCAAAAACAGCATACTCCGTGACTCCGCAATAACTATCCATTTCACTAGATCTCTTGCACACTCTAGTCATCCCTCTAATCTGTCTCAGCCATCTCGGACCTTTTCCTCTCGATACGCGCGCACATCTTCCCTCGCCCGTTTTCGTCTTCAACACAGCGAGGGCGATTTGTTGTATTGGTCGACGTTCTATGGTCGCGTGCAGAGGGGCCACTCTCCCAACACACGAACGGACTCTCTTTCATTATAAACGGCATAGCTCGTGCATTCCCAAGCGAAGAACACCCTACCACCACCCCTCTCGACGCGTTTGACACGAATGTCGCAGATTTCGTGCGCGTAGTCAATGTCCCTGATTTTCTTCCATCAAATCCGATTTTCTCATTAAAACTAAGAGTTCATTGTTTCAGATTGCTTCAAATGTTTCCTKCAACCACATGTTCCGCCTCAAACACCTGTTTTTCACGCCAATGCTGGTGCTGCTACAAATTTTCTGTGAGTTTTTCATTTTTTGGAAGGAAAAATCAATTTCAAACATGAAAATTCTTTACATGATAATCACTCTGATGAAAAACAATTGCTTCTCCTTCTATAATGAAGAGACAAGTCCAATATTAGCTCGAAACCAAATTTTCAGTATTTCAGAACCCTACTCCACCCATTACACTGGACCAAACATTAATATTTTTTGGCGGAATGTCTAGTGAAGGTTACACGATATCCACCAAATGCAGCTGCAATATTTGAGCATCCATGGTTCAACAGTGCTCAATCGAAGAAAAAGATGATGATGGATCTTCTCATAGAAATGAACGCTGATGCTCAAGAAAAGCTGGTGACTGATGGAGATGAGGAATCGGTGACAGAATCATACGAAAACTCACAGACGTGAAGACACTCAGAGCTCAGCTTCCGAAAGCCGCCAACCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCGATTTTCTCATTAAAACTAA</pcr_primer_p1>
		<pcr_primer_p2>GAGCTAATATTGGACTTGTCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCGATTTTCTCATTAAAACTAAGAGTTCATTGTTTCAGATTGCTTCAAATGTTTCCTTCAACCACATGTTCCGCCTCAAACACCTGTTTTTCACGCCAATGCTGGTGCTGCTACAAATTTTCTGTGAGTTTTTCATTTTTTGGAAGGAAAAATCAATTTCAAACATGAAAATTCTTTACATGATAATCACTCTGATGAAAAACAATTGCTTCTCCTTCTATAATGAAGAGACAAGTCCAATATTAGCTC</canonical_amplicon>
		<polymorphic_amplicon>TCCGATTTTCTCATTAAAACTAAGAGTTCATTGTTTCAGATTGCTTCAAATGTTTCCTKCAACCACATGTTCCGCCTCAAACACCTGTTTTTCACGCCAATGCTGGTGCTGCTACAAATTTTCTGTGAGTTTTTCATTTTTTGGAAGGAAAAATCAATTTCAAACATGAAAATTCTTTACATGATAATCACTCTGATGAAAAACAATTGCTTCTCCTTCTATAATGAAGAGACAAGTCCAATATTAGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30931</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>123488</contig_pos>
        <strand>+</strand>
        <context>GAGTTTTTCA[A/T]TTTTTGGAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTTTTCACGCCAATGCTGGTGCTGCTACAAATTTTCTGTGAGTTTTTCA</left_flank>
        <right_flank>TTTTTGGAAGGAAAAATCAATTTCAAACATGAAAATTCTTTACATGATAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGCATACTCCGTGACTCCGCAATAACTATCCATTTCACTAGATCTCTTGCACACTCTAGTCATCCCTCTAATCTGTCTCAGCCATCTCGGACCTTTTCCTCTCGATACGCGCGCACATCTTCCCTCGCCCGTTTTCGTCTTCAACACAGCGAGGGCGATTTGTTGTATTGGTCGACGTTCTATGGTCGCGTGCAGAGGGGCCACTCTCCCAACACACGAACGGACTCTCTTTCATTATAAACGGCATAGCTCGTGCATTCCCAAGCGAAGAACACCCTACCACCACCCCTCTCGACGCGTTTGACACGAATGTCGCAGATTTCGTGCGCGTAGTCAATGTCCCTGATTTTCTTCCATCAAATCCGATTTTCTCATTAAAACTAAGAGTTCATTGTTTCAGATTGCTTCAAATGTTTCCTTCAACCACATGTTCCGCCTCAAACACCTGTTTTTCACGCCAATGCTGGTGCTGCTACAAATTTTCTGTGAGTTTTTCATTTTTTGGAAGGAAAAATCAATTTCAAACATGAAAATTCTTTACATGATAATCACTCTGATGAAAAACAATTGCTTCTCCTTCTATAATGAAGAGACAAGTCCAATATTAGCTCGAAACCAAATTTTCAGTATTTCAGAACCCTACTCCACCCATTACACTGGACCAAACATTAATATTTTTTGGCGGAATGTCTAGTGAAGGTTACACGATATCCACCAAATGCAGCTGCAATATTTGAGCATCCATGGTTCAACAGTGCTCAATCGAAGAAAAAGATGATGATGGATCTTCTCATAGAAATGAACGCTGATGCTCAAGAAAAGCTGGTGACTGATGGAGATGAGGAATCGGTGACAGAATCATACGAAAACTCACAGACGTGAAGACACTCAGAGCTCAGCTTCCGAAAGCCGCCAACCAGCTACAACAAAGGGATTCAATGTTCCTGTACTATAATCGAATATCGAAACTCCACCACCAAACACTATTTCAATTCTCC</canonical>
            <polymorphic>ACAGCATACTCCGTGACTCCGCAATAACTATCCATTTCACTAGATCTCTTGCACACTCTAGTCATCCCTCTAATCTGTCTCAGCCATCTCGGACCTTTTCCTCTCGATACGCGCGCACATCTTCCCTCGCCCGTTTTCGTCTTCAACACAGCGAGGGCGATTTGTTGTATTGGTCGACGTTCTATGGTCGCGTGCAGAGGGGCCACTCTCCCAACACACGAACGGACTCTCTTTCATTATAAACGGCATAGCTCGTGCATTCCCAAGCGAAGAACACCCTACCACCACCCCTCTCGACGCGTTTGACACGAATGTCGCAGATTTCGTGCGCGTAGTCAATGTCCCTGATTTTCTTCCATCAAATCCGATTTTCTCATTAAAACTAAGAGTTCATTGTTTCAGATTGCTTCAAATGTTTCCTTCAACCACATGTTCCGCCTCAAACACCTGTTTTTCACGCCAATGCTGGTGCTGCTACAAATTTTCTGTGAGTTTTTCAWTTTTTGGAAGGAAAAATCAATTTCAAACATGAAAATTCTTTACATGATAATCACTCTGATGAAAAACAATTGCTTCTCCTTCTATAATGAAGAGACAAGTCCAATATTAGCTCGAAACCAAATTTTCAGTATTTCAGAACCCTACTCCACCCATTACACTGGACCAAACATTAATATTTTTTGGCGGAATGTCTAGTGAAGGTTACACGATATCCACCAAATGCAGCTGCAATATTTGAGCATCCATGGTTCAACAGTGCTCAATCGAAGAAAAAGATGATGATGGATCTTCTCATAGAAATGAACGCTGATGCTCAAGAAAAGCTGGTGACTGATGGAGATGAGGAATCGGTGACAGAATCATACGAAAACTCACAGACGTGAAGACACTCAGAGCTCAGCTTCCGAAAGCCGCCAACCAGCTACAACAAAGGGATTCAATGTTCCTGTACTATAATCGAATATCGAAACTCCACCACCAAACACTATTTCAATTCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCGATTTTCTCATTAAAACTAA</pcr_primer_p1>
		<pcr_primer_p2>GAGCTAATATTGGACTTGTCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCGATTTTCTCATTAAAACTAAGAGTTCATTGTTTCAGATTGCTTCAAATGTTTCCTTCAACCACATGTTCCGCCTCAAACACCTGTTTTTCACGCCAATGCTGGTGCTGCTACAAATTTTCTGTGAGTTTTTCATTTTTTGGAAGGAAAAATCAATTTCAAACATGAAAATTCTTTACATGATAATCACTCTGATGAAAAACAATTGCTTCTCCTTCTATAATGAAGAGACAAGTCCAATATTAGCTC</canonical_amplicon>
		<polymorphic_amplicon>TCCGATTTTCTCATTAAAACTAAGAGTTCATTGTTTCAGATTGCTTCAAATGTTTCCTTCAACCACATGTTCCGCCTCAAACACCTGTTTTTCACGCCAATGCTGGTGCTGCTACAAATTTTCTGTGAGTTTTTCAWTTTTTGGAAGGAAAAATCAATTTCAAACATGAAAATTCTTTACATGATAATCACTCTGATGAAAAACAATTGCTTCTCCTTCTATAATGAAGAGACAAGTCCAATATTAGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30932</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>123517</contig_pos>
        <strand></strand>
        <context>AATTTCAAAC[A/C]TGMAAATTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATTTTCTGTGAGTTTTTCATTTTTTGGAAGGAAAAATCAATTTCAAAC</left_flank>
        <right_flank>TGAAAATTCTTTACATGATAATCACTCTGATGAAAAACAATTGCTTCTCC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCATTTCACTAGATCTCTTGCACACTCTAGTCATCCCTCTAATCTGTCTCAGCCATCTCGGACCTTTTCCTCTCGATACGCGCGCACATCTTCCCTCGCCCGTTTTCGTCTTCAACACAGCGAGGGCGATTTGTTGTATTGGTCGACGTTCTATGGTCGCGTGCAGAGGGGCCACTCTCCCAACACACGAACGGACTCTCTTTCATTATAAACGGCATAGCTCGTGCATTCCCAAGCGAAGAACACCCTACCACCACCCCTCTCGACGCGTTTGACACGAATGTCGCAGATTTCGTGCGCGTAGTCAATGTCCCTGATTTTCTTCCATCAAATCCGATTTTCTCATTAAAACTAAGAGTTCATTGTTTCAGATTGCTTCAAATGTTTCCTTCAACCACATGTTCCGCCTCAAACACCTGTTTTTCACGCCAATGCTGGTGCTGCTACAAATTTTCTGTGAGTTTTTCATTTTTTGGAAGGAAAAATCAATTTCAAACATGAAAATTCTTTACATGATAATCACTCTGATGAAAAACAATTGCTTCTCCTTCTATAATGAAGAGACAAGTCCAATATTAGCTCGAAACCAAATTTTCAGTATTTCAGAACCCTACTCCACCCATTACACTGGACCAAACATTAATATTTTTTGGCGGAATGTCTAGTGAAGGTTACACGATATCCACCAAATGCAGCTGCAATATTTGAGCATCCATGGTTCAACAGTGCTCAATCGAAGAAAAAGATGATGATGGATCTTCTCATAGAAATGAACGCTGATGCTCAAGAAAAGCTGGTGACTGATGGAGATGAGGAATCGGTGACAGAATCATACGAAAACTCACAGACGTGAAGACACTCAGAGCTCAGCTTCCGAAAGCCGCCAACCAGCTACAACAAAGGGATTCAATGTTCCTGTACTATAATCGAATATCGAAACTCCACCACCAAACACTATTTCAATTCTCCACGATCAAACTGCCACTTGCCACAAAAGG</canonical>
            <polymorphic>ATCCATTTCACTAGATCTCTTGCACACTCTAGTCATCCCTCTAATCTGTCTCAGCCATCTCGGACCTTTTCCTCTCGATACGCGCGCACATCTTCCCTCGCCCGTTTTCGTCTTCAACACAGCGAGGGCGATTTGTTGTATTGGTCGACGTTCTATGGTCGCGTGCAGAGGGGCCACTCTCCCAACACACGAACGGACTCTCTTTCATTATAAACGGCATAGCTCGTGCATTCCCAAGCGAAGAACACCCTACCACCACCCCTCTCGACGCGTTTGACACGAATGTCGCAGATTTCGTGCGCGTAGTCAATGTCCCTGATTTTCTTCCATCAAATCCGATTTTCTCATTAAAACTAAGAGTTCATTGTTTCAGATTGCTTCAAATGTTTCCTTCAACCACATGTTCCGCCTCAAACACCTGTTTTTCACGCCAATGCTGGTGCTGCTACAAATTTTCTGTGAGTTTTTCATTTTTTGGAAGGAAAAATCAATTTCAAACMTGAAAATTCTTTACATGATAATCACTCTGATGAAAAACAATTGCTTCTCCTTCTATAATGAAGAGACAAGTCCAATATTAGCTCGAAACCAAATTTTCAGTATTTCAGAACCCTACTCCACCCATTACACTGGACCAAACATTAATATTTTTTGGCGGAATGTCTAGTGAAGGTTACACGATATCCACCAAATGCAGCTGCAATATTTGAGCATCCATGGTTCAACAGTGCTCAATCGAAGAAAAAGATGATGATGGATCTTCTCATAGAAATGAACGCTGATGCTCAAGAAAAGCTGGTGACTGATGGAGATGAGGAATCGGTGACAGAATCATACGAAAACTCACAGACGTGAAGACACTCAGAGCTCAGCTTCCGAAAGCCGCCAACCAGCTACAACAAAGGGATTCAATGTTCCTGTACTATAATCGAATATCGAAACTCCACCACCAAACACTATTTCAATTCTCCACGATCAAACTGCCACTTGCCACAAAAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>400 284 202 99 15</canonical_bands>
                <polymorphic_bands>400 284 202 114</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCGATTTTCTCATTAAAACTAA</pcr_primer_p1>
		<pcr_primer_p2>GAGCTAATATTGGACTTGTCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCGATTTTCTCATTAAAACTAAGAGTTCATTGTTTCAGATTGCTTCAAATGTTTCCTTCAACCACATGTTCCGCCTCAAACACCTGTTTTTCACGCCAATGCTGGTGCTGCTACAAATTTTCTGTGAGTTTTTCATTTTTTGGAAGGAAAAATCAATTTCAAACATGAAAATTCTTTACATGATAATCACTCTGATGAAAAACAATTGCTTCTCCTTCTATAATGAAGAGACAAGTCCAATATTAGCTC</canonical_amplicon>
		<polymorphic_amplicon>TCCGATTTTCTCATTAAAACTAAGAGTTCATTGTTTCAGATTGCTTCAAATGTTTCCTTCAACCACATGTTCCGCCTCAAACACCTGTTTTTCACGCCAATGCTGGTGCTGCTACAAATTTTCTGTGAGTTTTTCATTTTTTGGAAGGAAAAATCAATTTCAAACMTGAAAATTCTTTACATGATAATCACTCTGATGAAAAACAATTGCTTCTCCTTCTATAATGAAGAGACAAGTCCAATATTAGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30933</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>123520</contig_pos>
        <strand>+</strand>
        <context>TTCAAACMTG[A/C]AAATTCTTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTCTGTGAGTTTTTCATTTTTTGGAAGGAAAAATCAATTTCAAACATG</left_flank>
        <right_flank>AAATTCTTTACATGATAATCACTCTGATGAAAAACAATTGCTTCTCCTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTCACTAGATCTCTTGCACACTCTAGTCATCCCTCTAATCTGTCTCAGCCATCTCGGACCTTTTCCTCTCGATACGCGCGCACATCTTCCCTCGCCCGTTTTCGTCTTCAACACAGCGAGGGCGATTTGTTGTATTGGTCGACGTTCTATGGTCGCGTGCAGAGGGGCCACTCTCCCAACACACGAACGGACTCTCTTTCATTATAAACGGCATAGCTCGTGCATTCCCAAGCGAAGAACACCCTACCACCACCCCTCTCGACGCGTTTGACACGAATGTCGCAGATTTCGTGCGCGTAGTCAATGTCCCTGATTTTCTTCCATCAAATCCGATTTTCTCATTAAAACTAAGAGTTCATTGTTTCAGATTGCTTCAAATGTTTCCTTCAACCACATGTTCCGCCTCAAACACCTGTTTTTCACGCCAATGCTGGTGCTGCTACAAATTTTCTGTGAGTTTTTCATTTTTTGGAAGGAAAAATCAATTTCAAACATGAAAATTCTTTACATGATAATCACTCTGATGAAAAACAATTGCTTCTCCTTCTATAATGAAGAGACAAGTCCAATATTAGCTCGAAACCAAATTTTCAGTATTTCAGAACCCTACTCCACCCATTACACTGGACCAAACATTAATATTTTTTGGCGGAATGTCTAGTGAAGGTTACACGATATCCACCAAATGCAGCTGCAATATTTGAGCATCCATGGTTCAACAGTGCTCAATCGAAGAAAAAGATGATGATGGATCTTCTCATAGAAATGAACGCTGATGCTCAAGAAAAGCTGGTGACTGATGGAGATGAGGAATCGGTGACAGAATCATACGAAAACTCACAGACGTGAAGACACTCAGAGCTCAGCTTCCGAAAGCCGCCAACCAGCTACAACAAAGGGATTCAATGTTCCTGTACTATAATCGAATATCGAAACTCCACCACCAAACACTATTTCAATTCTCCACGATCAAACTGCCACTTGCCACAAAAGGAAA</canonical>
            <polymorphic>CATTTCACTAGATCTCTTGCACACTCTAGTCATCCCTCTAATCTGTCTCAGCCATCTCGGACCTTTTCCTCTCGATACGCGCGCACATCTTCCCTCGCCCGTTTTCGTCTTCAACACAGCGAGGGCGATTTGTTGTATTGGTCGACGTTCTATGGTCGCGTGCAGAGGGGCCACTCTCCCAACACACGAACGGACTCTCTTTCATTATAAACGGCATAGCTCGTGCATTCCCAAGCGAAGAACACCCTACCACCACCCCTCTCGACGCGTTTGACACGAATGTCGCAGATTTCGTGCGCGTAGTCAATGTCCCTGATTTTCTTCCATCAAATCCGATTTTCTCATTAAAACTAAGAGTTCATTGTTTCAGATTGCTTCAAATGTTTCCTTCAACCACATGTTCCGCCTCAAACACCTGTTTTTCACGCCAATGCTGGTGCTGCTACAAATTTTCTGTGAGTTTTTCATTTTTTGGAAGGAAAAATCAATTTCAAACATGMAAATTCTTTACATGATAATCACTCTGATGAAAAACAATTGCTTCTCCTTCTATAATGAAGAGACAAGTCCAATATTAGCTCGAAACCAAATTTTCAGTATTTCAGAACCCTACTCCACCCATTACACTGGACCAAACATTAATATTTTTTGGCGGAATGTCTAGTGAAGGTTACACGATATCCACCAAATGCAGCTGCAATATTTGAGCATCCATGGTTCAACAGTGCTCAATCGAAGAAAAAGATGATGATGGATCTTCTCATAGAAATGAACGCTGATGCTCAAGAAAAGCTGGTGACTGATGGAGATGAGGAATCGGTGACAGAATCATACGAAAACTCACAGACGTGAAGACACTCAGAGCTCAGCTTCCGAAAGCCGCCAACCAGCTACAACAAAGGGATTCAATGTTCCTGTACTATAATCGAATATCGAAACTCCACCACCAAACACTATTTCAATTCTCCACGATCAAACTGCCACTTGCCACAAAAGGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCGATTTTCTCATTAAAACTAA</pcr_primer_p1>
		<pcr_primer_p2>GAGCTAATATTGGACTTGTCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCGATTTTCTCATTAAAACTAAGAGTTCATTGTTTCAGATTGCTTCAAATGTTTCCTTCAACCACATGTTCCGCCTCAAACACCTGTTTTTCACGCCAATGCTGGTGCTGCTACAAATTTTCTGTGAGTTTTTCATTTTTTGGAAGGAAAAATCAATTTCAAACATGAAAATTCTTTACATGATAATCACTCTGATGAAAAACAATTGCTTCTCCTTCTATAATGAAGAGACAAGTCCAATATTAGCTC</canonical_amplicon>
		<polymorphic_amplicon>TCCGATTTTCTCATTAAAACTAAGAGTTCATTGTTTCAGATTGCTTCAAATGTTTCCTTCAACCACATGTTCCGCCTCAAACACCTGTTTTTCACGCCAATGCTGGTGCTGCTACAAATTTTCTGTGAGTTTTTCATTTTTTGGAAGGAAAAATCAATTTCAAACATGMAAATTCTTTACATGATAATCACTCTGATGAAAAACAATTGCTTCTCCTTCTATAATGAAGAGACAAGTCCAATATTAGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30934</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>123549</contig_pos>
        <strand>+</strand>
        <context>TCACTCTGAT[A/G]AAAAACAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAAATCAATTTCAAACATGAAAATTCTTTACATGATAATCACTCTGAT</left_flank>
        <right_flank>AAAAACAATTGCTTCTCCTTCTATAATGAAGAGACAAGTCCAATATTAGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATCCCTCTAATCTGTCTCAGCCATCTCGGACCTTTTCCTCTCGATACGCGCGCACATCTTCCCTCGCCCGTTTTCGTCTTCAACACAGCGAGGGCGATTTGTTGTATTGGTCGACGTTCTATGGTCGCGTGCAGAGGGGCCACTCTCCCAACACACGAACGGACTCTCTTTCATTATAAACGGCATAGCTCGTGCATTCCCAAGCGAAGAACACCCTACCACCACCCCTCTCGACGCGTTTGACACGAATGTCGCAGATTTCGTGCGCGTAGTCAATGTCCCTGATTTTCTTCCATCAAATCCGATTTTCTCATTAAAACTAAGAGTTCATTGTTTCAGATTGCTTCAAATGTTTCCTTCAACCACATGTTCCGCCTCAAACACCTGTTTTTCACGCCAATGCTGGTGCTGCTACAAATTTTCTGTGAGTTTTTCATTTTTTGGAAGGAAAAATCAATTTCAAACATGAAAATTCTTTACATGATAATCACTCTGATGAAAAACAATTGCTTCTCCTTCTATAATGAAGAGACAAGTCCAATATTAGCTCGAAACCAAATTTTCAGTATTTCAGAACCCTACTCCACCCATTACACTGGACCAAACATTAATATTTTTTGGCGGAATGTCTAGTGAAGGTTACACGATATCCACCAAATGCAGCTGCAATATTTGAGCATCCATGGTTCAACAGTGCTCAATCGAAGAAAAAGATGATGATGGATCTTCTCATAGAAATGAACGCTGATGCTCAAGAAAAGCTGGTGACTGATGGAGATGAGGAATCGGTGACAGAATCATACGAAAACTCACAGACGTGAAGACACTCAGAGCTCAGCTTCCGAAAGCCGCCAACCAGCTACAACAAAGGGATTCAATGTTCCTGTACTATAATCGAATATCGAAACTCCACCACCAAACACTATTTCAATTCTCCACGATCAAACTGCCACTTGCCACAAAAGGAAAATCTGATAATTCCAGTAATTCAAAGGTAA</canonical>
            <polymorphic>TCATCCCTCTAATCTGTCTCAGCCATCTCGGACCTTTTCCTCTCGATACGCGCGCACATCTTCCCTCGCCCGTTTTCGTCTTCAACACAGCGAGGGCGATTTGTTGTATTGGTCGACGTTCTATGGTCGCGTGCAGAGGGGCCACTCTCCCAACACACGAACGGACTCTCTTTCATTATAAACGGCATAGCTCGTGCATTCCCAAGCGAAGAACACCCTACCACCACCCCTCTCGACGCGTTTGACACGAATGTCGCAGATTTCGTGCGCGTAGTCAATGTCCCTGATTTTCTTCCATCAAATCCGATTTTCTCATTAAAACTAAGAGTTCATTGTTTCAGATTGCTTCAAATGTTTCCTTCAACCACATGTTCCGCCTCAAACACCTGTTTTTCACGCCAATGCTGGTGCTGCTACAAATTTTCTGTGAGTTTTTCATTTTTTGGAAGGAAAAATCAATTTCAAACATGAAAATTCTTTACATGATAATCACTCTGATRAAAAACAATTGCTTCTCCTTCTATAATGAAGAGACAAGTCCAATATTAGCTCGAAACCAAATTTTCAGTATTTCAGAACCCTACTCCACCCATTACACTGGACCAAACATTAATATTTTTTGGCGGAATGTCTAGTGAAGGTTACACGATATCCACCAAATGCAGCTGCAATATTTGAGCATCCATGGTTCAACAGTGCTCAATCGAAGAAAAAGATGATGATGGATCTTCTCATAGAAATGAACGCTGATGCTCAAGAAAAGCTGGTGACTGATGGAGATGAGGAATCGGTGACAGAATCATACGAAAACTCACAGACGTGAAGACACTCAGAGCTCAGCTTCCGAAAGCCGCCAACCAGCTACAACAAAGGGATTCAATGTTCCTGTACTATAATCGAATATCGAAACTCCACCACCAAACACTATTTCAATTCTCCACGATCAAACTGCCACTTGCCACAAAAGGAAAATCTGATAATTCCAGTAATTCAAAGGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>399 242 183 96 80</canonical_bands>
                <polymorphic_bands>399 338 183 80</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCGATTTTCTCATTAAAACTAA</pcr_primer_p1>
		<pcr_primer_p2>CGAGCTAATATTGGACTTGTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCCGATTTTCTCATTAAAACTAAGAGTTCATTGTTTCAGATTGCTTCAAATGTTTCCTTCAACCACATGTTCCGCCTCAAACACCTGTTTTTCACGCCAATGCTGGTGCTGCTACAAATTTTCTGTGAGTTTTTCATTTTTTGGAAGGAAAAATCAATTTCAAACATGAAAATTCTTTACATGATAATCACTCTGATGAAAAACAATTGCTTCTCCTTCTATAATGAAGAGACAAGTCCAATATTAGCTCG</canonical_amplicon>
		<polymorphic_amplicon>TCCGATTTTCTCATTAAAACTAAGAGTTCATTGTTTCAGATTGCTTCAAATGTTTCCTTCAACCACATGTTCCGCCTCAAACACCTGTTTTTCACGCCAATGCTGGTGCTGCTACAAATTTTCTGTGAGTTTTTCATTTTTTGGAAGGAAAAATCAATTTCAAACATGAAAATTCTTTACATGATAATCACTCTGATRAAAAACAATTGCTTCTCCTTCTATAATGAAGAGACAAGTCCAATATTAGCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30935</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>123742</contig_pos>
        <strand>+</strand>
        <context>CCATGGTTCA[A/C]CAGTGCTCWA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TACACGATATCCACCAAATGCAGCTGCAATATTTGAGCATCCATGGTTCA</left_flank>
        <right_flank>CAGTGCTCAATCGAAGAAAAAGATGATGATGGATCTTCTCATAGAAATGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGCATTCCCAAGCGAAGAACACCCTACCACCACCCCTCTCGACGCGTTTGACACGAATGTCGCAGATTTCGTGCGCGTAGTCAATGTCCCTGATTTTCTTCCATCAAATCCGATTTTCTCATTAAAACTAAGAGTTCATTGTTTCAGATTGCTTCAAATGTTTCCTTCAACCACATGTTCCGCCTCAAACACCTGTTTTTCACGCCAATGCTGGTGCTGCTACAAATTTTCTGTGAGTTTTTCATTTTTTGGAAGGAAAAATCAATTTCAAACATGAAAATTCTTTACATGATAATCACTCTGATGAAAAACAATTGCTTCTCCTTCTATAATGAAGAGACAAGTCCAATATTAGCTCGAAACCAAATTTTCAGTATTTCAGAACCCTACTCCACCCATTACACTGGACCAAACATTAATATTTTTTGGCGGAATGTCTAGTGAAGGTTACACGATATCCACCAAATGCAGCTGCAATATTTGAGCATCCATGGTTCAACAGTGCTCAATCGAAGAAAAAGATGATGATGGATCTTCTCATAGAAATGAACGCTGATGCTCAAGAAAAGCTGGTGACTGATGGAGATGAGGAATCGGTGACAGAATCATACGAAAACTCACAGACGTGAAGACACTCAGAGCTCAGCTTCCGAAAGCCGCCAACCAGCTACAACAAAGGGATTCAATGTTCCTGTACTATAATCGAATATCGAAACTCCACCACCAAACACTATTTCAATTCTCCACGATCAAACTGCCACTTGCCACAAAAGGAAAATCTGATAATTCCAGTAATTCAAAGGTAAGATTATTCTTAGTGCCATCTCAGACGAAAAAAAAGTGTACGATGCTTTTTACAAGTAGGAAGAAGAGTTCGTGACTCACAAAACAGCTTCGTACTGAATGAATCGGCCGTTAAGATGCAACCGCACTCAAAATGTCACACTACAACGATTCTCTCTCATTTCAGTCCCCCTTCACCAATATCCAAAAGCTCCG</canonical>
            <polymorphic>GTGCATTCCCAAGCGAAGAACACCCTACCACCACCCCTCTCGACGCGTTTGACACGAATGTCGCAGATTTCGTGCGCGTAGTCAATGTCCCTGATTTTCTTCCATCAAATCCGATTTTCTCATTAAAACTAAGAGTTCATTGTTTCAGATTGCTTCAAATGTTTCCTTCAACCACATGTTCCGCCTCAAACACCTGTTTTTCACGCCAATGCTGGTGCTGCTACAAATTTTCTGTGAGTTTTTCATTTTTTGGAAGGAAAAATCAATTTCAAACATGAAAATTCTTTACATGATAATCACTCTGATGAAAAACAATTGCTTCTCCTTCTATAATGAAGAGACAAGTCCAATATTAGCTCGAAACCAAATTTTCAGTATTTCAGAACCCTACTCCACCCATTACACTGGACCAAACATTAATATTTTTTGGCGGAATGTCTAGTGAAGGTTACACGATATCCACCAAATGCAGCTGCAATATTTGAGCATCCATGGTTCAMCAGTGCTCAATCGAAGAAAAAGATGATGATGGATCTTCTCATAGAAATGAACGCTGATGCTCAAGAAAAGCTGGTGACTGATGGAGATGAGGAATCGGTGACAGAATCATACGAAAACTCACAGACGTGAAGACACTCAGAGCTCAGCTTCCGAAAGCCGCCAACCAGCTACAACAAAGGGATTCAATGTTCCTGTACTATAATCGAATATCGAAACTCCACCACCAAACACTATTTCAATTCTCCACGATCAAACTGCCACTTGCCACAAAAGGAAAATCTGATAATTCCAGTAATTCAAAGGTAAGATTATTCTTAGTGCCATCTCAGACGAAAAAAAAGTGTACGATGCTTTTTACAAGTAGGAAGAAGAGTTCGTGACTCACAAAACAGCTTCGTACTGAATGAATCGGCCGTTAAGATGCAACCGCACTCAAAATGTCACACTACAACGATTCTCTCTCATTTCAGTCCCCCTTCACCAATATCCAAAAGCTCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTATTTCAGAACCCTACTCCAC</pcr_primer_p1>
		<pcr_primer_p2>GTGAGTTTTCGTATGATTCTGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGTATTTCAGAACCCTACTCCACCCATTACACTGGACCAAACATTAATATTTTTTGGCGGAATGTCTAGTGAAGGTTACACGATATCCACCAAATGCAGCTGCAATATTTGAGCATCCATGGTTCAACAGTGCTCAATCGAAGAAAAAGATGATGATGGATCTTCTCATAGAAATGAACGCTGATGCTCAAGAAAAGCTGGTGACTGATGGAGATGAGGAATCGGTGACAGAATCATACGAAAACTCAC</canonical_amplicon>
		<polymorphic_amplicon>AGTATTTCAGAACCCTACTCCACCCATTACACTGGACCAAACATTAATATTTTTTGGCGGAATGTCTAGTGAAGGTTACACGATATCCACCAAATGCAGCTGCAATATTTGAGCATCCATGGTTCAMCAGTGCTCAATCGAAGAAAAAGATGATGATGGATCTTCTCATAGAAATGAACGCTGATGCTCAAGAAAAGCTGGTGACTGATGGAGATGAGGAATCGGTGACAGAATCATACGAAAACTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30936</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>123751</contig_pos>
        <strand>+</strand>
        <context>AMCAGTGCTC[A/T]ATCGAAGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCACCAAATGCAGCTGCAATATTTGAGCATCCATGGTTCAACAGTGCTC</left_flank>
        <right_flank>ATCGAAGAAAAAGATGATGATGGATCTTCTCATAGAAATGAACGCTGATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGCGAAGAACACCCTACCACCACCCCTCTCGACGCGTTTGACACGAATGTCGCAGATTTCGTGCGCGTAGTCAATGTCCCTGATTTTCTTCCATCAAATCCGATTTTCTCATTAAAACTAAGAGTTCATTGTTTCAGATTGCTTCAAATGTTTCCTTCAACCACATGTTCCGCCTCAAACACCTGTTTTTCACGCCAATGCTGGTGCTGCTACAAATTTTCTGTGAGTTTTTCATTTTTTGGAAGGAAAAATCAATTTCAAACATGAAAATTCTTTACATGATAATCACTCTGATGAAAAACAATTGCTTCTCCTTCTATAATGAAGAGACAAGTCCAATATTAGCTCGAAACCAAATTTTCAGTATTTCAGAACCCTACTCCACCCATTACACTGGACCAAACATTAATATTTTTTGGCGGAATGTCTAGTGAAGGTTACACGATATCCACCAAATGCAGCTGCAATATTTGAGCATCCATGGTTCAACAGTGCTCAATCGAAGAAAAAGATGATGATGGATCTTCTCATAGAAATGAACGCTGATGCTCAAGAAAAGCTGGTGACTGATGGAGATGAGGAATCGGTGACAGAATCATACGAAAACTCACAGACGTGAAGACACTCAGAGCTCAGCTTCCGAAAGCCGCCAACCAGCTACAACAAAGGGATTCAATGTTCCTGTACTATAATCGAATATCGAAACTCCACCACCAAACACTATTTCAATTCTCCACGATCAAACTGCCACTTGCCACAAAAGGAAAATCTGATAATTCCAGTAATTCAAAGGTAAGATTATTCTTAGTGCCATCTCAGACGAAAAAAAAGTGTACGATGCTTTTTACAAGTAGGAAGAAGAGTTCGTGACTCACAAAACAGCTTCGTACTGAATGAATCGGCCGTTAAGATGCAACCGCACTCAAAATGTCACACTACAACGATTCTCTCTCATTTCAGTCCCCCTTCACCAATATCCAAAAGCTCCGTCAAATTCT</canonical>
            <polymorphic>CAAGCGAAGAACACCCTACCACCACCCCTCTCGACGCGTTTGACACGAATGTCGCAGATTTCGTGCGCGTAGTCAATGTCCCTGATTTTCTTCCATCAAATCCGATTTTCTCATTAAAACTAAGAGTTCATTGTTTCAGATTGCTTCAAATGTTTCCTTCAACCACATGTTCCGCCTCAAACACCTGTTTTTCACGCCAATGCTGGTGCTGCTACAAATTTTCTGTGAGTTTTTCATTTTTTGGAAGGAAAAATCAATTTCAAACATGAAAATTCTTTACATGATAATCACTCTGATGAAAAACAATTGCTTCTCCTTCTATAATGAAGAGACAAGTCCAATATTAGCTCGAAACCAAATTTTCAGTATTTCAGAACCCTACTCCACCCATTACACTGGACCAAACATTAATATTTTTTGGCGGAATGTCTAGTGAAGGTTACACGATATCCACCAAATGCAGCTGCAATATTTGAGCATCCATGGTTCAACAGTGCTCWATCGAAGAAAAAGATGATGATGGATCTTCTCATAGAAATGAACGCTGATGCTCAAGAAAAGCTGGTGACTGATGGAGATGAGGAATCGGTGACAGAATCATACGAAAACTCACAGACGTGAAGACACTCAGAGCTCAGCTTCCGAAAGCCGCCAACCAGCTACAACAAAGGGATTCAATGTTCCTGTACTATAATCGAATATCGAAACTCCACCACCAAACACTATTTCAATTCTCCACGATCAAACTGCCACTTGCCACAAAAGGAAAATCTGATAATTCCAGTAATTCAAAGGTAAGATTATTCTTAGTGCCATCTCAGACGAAAAAAAAGTGTACGATGCTTTTTACAAGTAGGAAGAAGAGTTCGTGACTCACAAAACAGCTTCGTACTGAATGAATCGGCCGTTAAGATGCAACCGCACTCAAAATGTCACACTACAACGATTCTCTCTCATTTCAGTCCCCCTTCACCAATATCCAAAAGCTCCGTCAAATTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTATTTCAGAACCCTACTCCAC</pcr_primer_p1>
		<pcr_primer_p2>GTGAGTTTTCGTATGATTCTGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGTATTTCAGAACCCTACTCCACCCATTACACTGGACCAAACATTAATATTTTTTGGCGGAATGTCTAGTGAAGGTTACACGATATCCACCAAATGCAGCTGCAATATTTGAGCATCCATGGTTCAACAGTGCTCAATCGAAGAAAAAGATGATGATGGATCTTCTCATAGAAATGAACGCTGATGCTCAAGAAAAGCTGGTGACTGATGGAGATGAGGAATCGGTGACAGAATCATACGAAAACTCAC</canonical_amplicon>
		<polymorphic_amplicon>AGTATTTCAGAACCCTACTCCACCCATTACACTGGACCAAACATTAATATTTTTTGGCGGAATGTCTAGTGAAGGTTACACGATATCCACCAAATGCAGCTGCAATATTTGAGCATCCATGGTTCAACAGTGCTCWATCGAAGAAAAAGATGATGATGGATCTTCTCATAGAAATGAACGCTGATGCTCAAGAAAAGCTGGTGACTGATGGAGATGAGGAATCGGTGACAGAATCATACGAAAACTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30937</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>123883</contig_pos>
        <strand>+</strand>
        <context>AGACACTCAG[A/T]GCTCAGCTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAATCGGTGACAGAATCATACGAAAACTCACAGACGTGAAGACACTCAG</left_flank>
        <right_flank>GCTCAGCTTCCGAAAGCCGCCAACCAGCTACAACAAAGGGATTCAATGTT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTCAGATTGCTTCAAATGTTTCCTTCAACCACATGTTCCGCCTCAAACACCTGTTTTTCACGCCAATGCTGGTGCTGCTACAAATTTTCTGTGAGTTTTTCATTTTTTGGAAGGAAAAATCAATTTCAAACATGAAAATTCTTTACATGATAATCACTCTGATGAAAAACAATTGCTTCTCCTTCTATAATGAAGAGACAAGTCCAATATTAGCTCGAAACCAAATTTTCAGTATTTCAGAACCCTACTCCACCCATTACACTGGACCAAACATTAATATTTTTTGGCGGAATGTCTAGTGAAGGTTACACGATATCCACCAAATGCAGCTGCAATATTTGAGCATCCATGGTTCAACAGTGCTCAATCGAAGAAAAAGATGATGATGGATCTTCTCATAGAAATGAACGCTGATGCTCAAGAAAAGCTGGTGACTGATGGAGATGAGGAATCGGTGACAGAATCATACGAAAACTCACAGACGTGAAGACACTCAGAGCTCAGCTTCCGAAAGCCGCCAACCAGCTACAACAAAGGGATTCAATGTTCCTGTACTATAATCGAATATCGAAACTCCACCACCAAACACTATTTCAATTCTCCACGATCAAACTGCCACTTGCCACAAAAGGAAAATCTGATAATTCCAGTAATTCAAAGGTAAGATTATTCTTAGTGCCATCTCAGACGAAAAAAAAGTGTACGATGCTTTTTACAAGTAGGAAGAAGAGTTCGTGACTCACAAAACAGCTTCGTACTGAATGAATCGGCCGTTAAGATGCAACCGCACTCAAAATGTCACACTACAACGATTCTCTCTCATTTCAGTCCCCCTTCACCAATATCCAAAAGCTCCGTCAAATTCTCAATACCATCATCGGTCACCACGACGCTGGACCACAAACAGAGTTCAACTGTTTTGATTCTCCATGATCAGAGCGTCAATCGTCACGACAATCGCCACGACACTCGCGACGTCAGTCTCCACAAAAAGAGCA</canonical>
            <polymorphic>GTTTCAGATTGCTTCAAATGTTTCCTTCAACCACATGTTCCGCCTCAAACACCTGTTTTTCACGCCAATGCTGGTGCTGCTACAAATTTTCTGTGAGTTTTTCATTTTTTGGAAGGAAAAATCAATTTCAAACATGAAAATTCTTTACATGATAATCACTCTGATGAAAAACAATTGCTTCTCCTTCTATAATGAAGAGACAAGTCCAATATTAGCTCGAAACCAAATTTTCAGTATTTCAGAACCCTACTCCACCCATTACACTGGACCAAACATTAATATTTTTTGGCGGAATGTCTAGTGAAGGTTACACGATATCCACCAAATGCAGCTGCAATATTTGAGCATCCATGGTTCAACAGTGCTCAATCGAAGAAAAAGATGATGATGGATCTTCTCATAGAAATGAACGCTGATGCTCAAGAAAAGCTGGTGACTGATGGAGATGAGGAATCGGTGACAGAATCATACGAAAACTCACAGACGTGAAGACACTCAGWGCTCAGCTTCCGAAAGCCGCCAACCAGCTACAACAAAGGGATTCAATGTTCCTGTACTATAATCGAATATCGAAACTCCACCACCAAACACTATTTCAATTCTCCACGATCAAACTGCCACTTGCCACAAAAGGAAAATCTGATAATTCCAGTAATTCAAAGGTAAGATTATTCTTAGTGCCATCTCAGACGAAAAAAAAGTGTACGATGCTTTTTACAAGTAGGAAGAAGAGTTCGTGACTCACAAAACAGCTTCGTACTGAATGAATCGGCCGTTAAGATGCAACCGCACTCAAAATGTCACACTACAACGATTCTCTCTCATTTCAGTCCCCCTTCACCAATATCCAAAAGCTCCGTCAAATTCTCAATACCATCATCGGTCACCACGACGCTGGACCACAAACAGAGTTCAACTGTTTTGATTCTCCATGATCAGAGCGTCAATCGTCACGACAATCGCCACGACACTCGCGACGTCAGTCTCCACAAAAAGAGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>225 215 146 116 102 98 72 21 5</canonical_bands>
                <polymorphic_bands>225 215 146 116 102 98 77 21</polymorphic_bands>
            </assay>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>497 366 137</canonical_bands>
                <polymorphic_bands>634 366</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>497 366 137</canonical_bands>
                <polymorphic_bands>634 366</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>225 215 146 116 98 82 72 20 11 10 5</canonical_bands>
                <polymorphic_bands>225 215 146 116 98 82 77 20 11 10</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>257 250 156 130 79 62 47 13 6</canonical_bands>
                <polymorphic_bands>270 250 156 130 79 62 47 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCGAAGAAAAAGATGATGATG</pcr_primer_p1>
		<pcr_primer_p2>GTGGAGAATTGAAATAGTGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ATCGAAGAAAAAGATGATGATGGATCTTCTCATAGAAATGAACGCTGATGCTCAAGAAAAGCTGGTGACTGATGGAGATGAGGAATCGGTGACAGAATCATACGAAAACTCACAGACGTGAAGACACTCAGAGCTCAGCTTCCGAAAGCCGCCAACCAGCTACAACAAAGGGATTCAATGTTCCTGTACTATAATCGAATATCGAAACTCCACCACCAAACACTATTTCAATTCTCCAC</canonical_amplicon>
		<polymorphic_amplicon>ATCGAAGAAAAAGATGATGATGGATCTTCTCATAGAAATGAACGCTGATGCTCAAGAAAAGCTGGTGACTGATGGAGATGAGGAATCGGTGACAGAATCATACGAAAACTCACAGACGTGAAGACACTCAGWGCTCAGCTTCCGAAAGCCGCCAACCAGCTACAACAAAGGGATTCAATGTTCCTGTACTATAATCGAATATCGAAACTCCACCACCAAACACTATTTCAATTCTCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30938</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>123925</contig_pos>
        <strand>+</strand>
        <context>AACAAAGGGA[C/T]TCAATGTTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACACTCAGAGCTCAGCTTCCGAAAGCCGCCAACCAGCTACAACAAAGGGA</left_flank>
        <right_flank>TCAATGTTCCTGTACTATAATCGAATATCGAAACTCCACCACCAAACACT</right_flank>
        <qual_score>130</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTCAAACACCTGTTTTTCACGCCAATGCTGGTGCTGCTACAAATTTTCTGTGAGTTTTTCATTTTTTGGAAGGAAAAATCAATTTCAAACATGAAAATTCTTTACATGATAATCACTCTGATGAAAAACAATTGCTTCTCCTTCTATAATGAAGAGACAAGTCCAATATTAGCTCGAAACCAAATTTTCAGTATTTCAGAACCCTACTCCACCCATTACACTGGACCAAACATTAATATTTTTTGGCGGAATGTCTAGTGAAGGTTACACGATATCCACCAAATGCAGCTGCAATATTTGAGCATCCATGGTTCAACAGTGCTCAATCGAAGAAAAAGATGATGATGGATCTTCTCATAGAAATGAACGCTGATGCTCAAGAAAAGCTGGTGACTGATGGAGATGAGGAATCGGTGACAGAATCATACGAAAACTCACAGACGTGAAGACACTCAGAGCTCAGCTTCCGAAAGCCGCCAACCAGCTACAACAAAGGGATTCAATGTTCCTGTACTATAATCGAATATCGAAACTCCACCACCAAACACTATTTCAATTCTCCACGATCAAACTGCCACTTGCCACAAAAGGAAAATCTGATAATTCCAGTAATTCAAAGGTAAGATTATTCTTAGTGCCATCTCAGACGAAAAAAAAGTGTACGATGCTTTTTACAAGTAGGAAGAAGAGTTCGTGACTCACAAAACAGCTTCGTACTGAATGAATCGGCCGTTAAGATGCAACCGCACTCAAAATGTCACACTACAACGATTCTCTCTCATTTCAGTCCCCCTTCACCAATATCCAAAAGCTCCGTCAAATTCTCAATACCATCATCGGTCACCACGACGCTGGACCACAAACAGAGTTCAACTGTTTTGATTCTCCATGATCAGAGCGTCAATCGTCACGACAATCGCCACGACACTCGCGACGTCAGTCTCCACAAAAAGAGCAGAATCCTGATTCTAGTGTTTATAATTCTATTTGTGATACAAT</canonical>
            <polymorphic>CCTCAAACACCTGTTTTTCACGCCAATGCTGGTGCTGCTACAAATTTTCTGTGAGTTTTTCATTTTTTGGAAGGAAAAATCAATTTCAAACATGAAAATTCTTTACATGATAATCACTCTGATGAAAAACAATTGCTTCTCCTTCTATAATGAAGAGACAAGTCCAATATTAGCTCGAAACCAAATTTTCAGTATTTCAGAACCCTACTCCACCCATTACACTGGACCAAACATTAATATTTTTTGGCGGAATGTCTAGTGAAGGTTACACGATATCCACCAAATGCAGCTGCAATATTTGAGCATCCATGGTTCAACAGTGCTCAATCGAAGAAAAAGATGATGATGGATCTTCTCATAGAAATGAACGCTGATGCTCAAGAAAAGCTGGTGACTGATGGAGATGAGGAATCGGTGACAGAATCATACGAAAACTCACAGACGTGAAGACACTCAGAGCTCAGCTTCCGAAAGCCGCCAACCAGCTACAACAAAGGGAYTCAATGTTCCTGTACTATAATCGAATATCGAAACTCCACCACCAAACACTATTTCAATTCTCCACGATCAAACTGCCACTTGCCACAAAAGGAAAATCTGATAATTCCAGTAATTCAAAGGTAAGATTATTCTTAGTGCCATCTCAGACGAAAAAAAAGTGTACGATGCTTTTTACAAGTAGGAAGAAGAGTTCGTGACTCACAAAACAGCTTCGTACTGAATGAATCGGCCGTTAAGATGCAACCGCACTCAAAATGTCACACTACAACGATTCTCTCTCATTTCAGTCCCCCTTCACCAATATCCAAAAGCTCCGTCAAATTCTCAATACCATCATCGGTCACCACGACGCTGGACCACAAACAGAGTTCAACTGTTTTGATTCTCCATGATCAGAGCGTCAATCGTCACGACAATCGCCACGACACTCGCGACGTCAGTCTCCACAAAAAGAGCAGAATCCTGATTCTAGTGTTTATAATTCTATTTGTGATACAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>409 226 111 77 77 47 34 12 7</canonical_bands>
                <polymorphic_bands>409 303 111 77 47 34 12 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAACTCACAGACGTGAAGA</pcr_primer_p1>
		<pcr_primer_p2>CTTGTAAAAAGCATCGTACACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAACTCACAGACGTGAAGACACTCAGAGCTCAGCTTCCGAAAGCCGCCAACCAGCTACAACAAAGGGATTCAATGTTCCTGTACTATAATCGAATATCGAAACTCCACCACCAAACACTATTTCAATTCTCCACGATCAAACTGCCACTTGCCACAAAAGGAAAATCTGATAATTCCAGTAATTCAAAGGTAAGATTATTCTTAGTGCCATCTCAGACGAAAAAAAAGTGTACGATGCTTTTTACAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAACTCACAGACGTGAAGACACTCAGAGCTCAGCTTCCGAAAGCCGCCAACCAGCTACAACAAAGGGAYTCAATGTTCCTGTACTATAATCGAATATCGAAACTCCACCACCAAACACTATTTCAATTCTCCACGATCAAACTGCCACTTGCCACAAAAGGAAAATCTGATAATTCCAGTAATTCAAAGGTAAGATTATTCTTAGTGCCATCTCAGACGAAAAAAAAGTGTACGATGCTTTTTACAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30939</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>125361</contig_pos>
        <strand>+</strand>
        <context>TTGAGAAGCA[A/C]GTTYTGATAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAGAACATGCCTGCGAAACACAATGAGCGAATGAATCCGATTGAGAAGCA</left_flank>
        <right_flank>GTTTTGATACAGAATCATAACTTGCTTGGTACAAATGAAAACAAAGTCTG</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGAAAATCTGACCTCACAGTGTCCGCCACATCGACACCAGCAAGATCAAAGCAGCTTCACAACATGCAAATTGTAATTAGTTTGTCAGAACAATCACATCGTTTTCCTCAAATGACTTCGACAACGAATAATGTGCTTGGAGTTAAAGAAGGTTCATTGGTAAGAAGTTGCAGTTACGTGATAATTAACACCCCTTATCCATCACAATTTTAGAGTGCACAACTCCATGATCTTCGACGGAGCAAGAAATTAAAACAGAGTGAATCAAGCTAGTCGATGAACAATCCAGAAAAATTCATTTCGGAGCTAACCAACCTGACACAAATCTTGGACTTCGATATGGATGCTAAGGAGAAACGACCGCGCAAAGAGAAGTGTGAACGTTATCACCAACTCAAAGAGAAAGATTTCCTGATCCAACTCTAGCAAAATGCCGAAGCCACCTTGCAGAACATGCCTGCGAAACACAATGAGCGAATGAATCCGATTGAGAAGCAAGTTTTGATACAGAATCATAACTTGCTTGGTACAAATGAAAACAAAGTCTGAGAATTGGACAAACGAACATCGAGAAAAGTGAGGTAAACCTTTCATAGAAATTATGTCTAATTTCGCAATGTTTCAGATAAGCATTGTAAACTTTTCAAGATTTCCCTTTTGCTTTTGCTCTCAGATACTTGCCCGCCAACAACGTGTAAGGAATCAAGTTGAGAAGAATCAGAAGATTGAACAGAGGATTTCACTCGAGCATCGACCAATGATCCCAAGGAACTCCCAAAGAAAATGTATGCTGAGACTAAAACTTGATGTGATCAAGTACAGCCTCCGCGTCAGTGTTACAGTAAGTTTTAATTCCGAGAGATGCTAAAAAAATAGTTGAAATCGTTGCAGAACATGTCGAACGCAAAAATGCAGTGGCGAATTTGTCTAGTAGATGGGCAGGAAGCTATGCGAATACGAAATGCGGTTTAGAAGCAGGACTTTAAATGGAAGAGGAC</canonical>
            <polymorphic>ACTGAAAATCTGACCTCACAGTGTCCGCCACATCGACACCAGCAAGATCAAAGCAGCTTCACAACATGCAAATTGTAATTAGTTTGTCAGAACAATCACATCGTTTTCCTCAAATGACTTCGACAACGAATAATGTGCTTGGAGTTAAAGAAGGTTCATTGGTAAGAAGTTGCAGTTACGTGATAATTAACACCCCTTATCCATCACAATTTTAGAGTGCACAACTCCATGATCTTCGACGGAGCAAGAAATTAAAACAGAGTGAATCAAGCTAGTCGATGAACAATCCAGAAAAATTCATTTCGGAGCTAACCAACCTGACACAAATCTTGGACTTCGATATGGATGCTAAGGAGAAACGACCGCGCAAAGAGAAGTGTGAACGTTATCACCAACTCAAAGAGAAAGATTTCCTGATCCAACTCTAGCAAAATGCCGAAGCCACCTTGCAGAACATGCCTGCGAAACACAATGAGCGAATGAATCCGATTGAGAAGCAMGTTTTGATACAGAATCATAACTTGCTTGGTACAAATGAAAACAAAGTCTGAGAATTGGACAAACGAACATCGAGAAAAGTGAGGTAAACCTTTCATAGAAATTATGTCTAATTTCGCAATGTTTCAGATAAGCATTGTAAACTTTTCAAGATTTCCCTTTTGCTTTTGCTCTCAGATACTTGCCCGCCAACAACGTGTAAGGAATCAAGTTGAGAAGAATCAGAAGATTGAACAGAGGATTTCACTCGAGCATCGACCAATGATCCCAAGGAACTCCCAAAGAAAATGTATGCTGAGACTAAAACTTGATGTGATCAAGTACAGCCTCCGCGTCAGTGTTACAGTAAGTTTTAATTCCGAGAGATGCTAAAAAAATAGTTGAAATCGTTGCAGAACATGTCGAACGCAAAAATGCAGTGGCGAATTTGTCTAGTAGATGGGCAGGAAGCTATGCGAATACGAAATGCGGTTTAGAAGCAGGACTTTAAATGGAAGAGGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTATCACCAACTCAAAGAGAAA</pcr_primer_p1>
		<pcr_primer_p2>TATCTGAAACATTGCGAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTATCACCAACTCAAAGAGAAAGATTTCCTGATCCAACTCTAGCAAAATGCCGAAGCCACCTTGCAGAACATGCCTGCGAAACACAATGAGCGAATGAATCCGATTGAGAAGCAAGTTTTGATACAGAATCATAACTTGCTTGGTACAAATGAAAACAAAGTCTGAGAATTGGACAAACGAACATCGAGAAAAGTGAGGTAAACCTTTCATAGAAATTATGTCTAATTTCGCAATGTTTCAGATA</canonical_amplicon>
		<polymorphic_amplicon>GTTATCACCAACTCAAAGAGAAAGATTTCCTGATCCAACTCTAGCAAAATGCCGAAGCCACCTTGCAGAACATGCCTGCGAAACACAATGAGCGAATGAATCCGATTGAGAAGCAMGTTTTGATACAGAATCATAACTTGCTTGGTACAAATGAAAACAAAGTCTGAGAATTGGACAAACGAACATCGAGAAAAGTGAGGTAAACCTTTCATAGAAATTATGTCTAATTTCGCAATGTTTCAGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30940</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>125365</contig_pos>
        <strand>+</strand>
        <context>GAAGCAMGTT[C/T]TGATACAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACATGCCTGCGAAACACAATGAGCGAATGAATCCGATTGAGAAGCAAGTT</left_flank>
        <right_flank>TGATACAGAATCATAACTTGCTTGGTACAAATGAAAACAAAGTCTGAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATCTGACCTCACAGTGTCCGCCACATCGACACCAGCAAGATCAAAGCAGCTTCACAACATGCAAATTGTAATTAGTTTGTCAGAACAATCACATCGTTTTCCTCAAATGACTTCGACAACGAATAATGTGCTTGGAGTTAAAGAAGGTTCATTGGTAAGAAGTTGCAGTTACGTGATAATTAACACCCCTTATCCATCACAATTTTAGAGTGCACAACTCCATGATCTTCGACGGAGCAAGAAATTAAAACAGAGTGAATCAAGCTAGTCGATGAACAATCCAGAAAAATTCATTTCGGAGCTAACCAACCTGACACAAATCTTGGACTTCGATATGGATGCTAAGGAGAAACGACCGCGCAAAGAGAAGTGTGAACGTTATCACCAACTCAAAGAGAAAGATTTCCTGATCCAACTCTAGCAAAATGCCGAAGCCACCTTGCAGAACATGCCTGCGAAACACAATGAGCGAATGAATCCGATTGAGAAGCAAGTTTTGATACAGAATCATAACTTGCTTGGTACAAATGAAAACAAAGTCTGAGAATTGGACAAACGAACATCGAGAAAAGTGAGGTAAACCTTTCATAGAAATTATGTCTAATTTCGCAATGTTTCAGATAAGCATTGTAAACTTTTCAAGATTTCCCTTTTGCTTTTGCTCTCAGATACTTGCCCGCCAACAACGTGTAAGGAATCAAGTTGAGAAGAATCAGAAGATTGAACAGAGGATTTCACTCGAGCATCGACCAATGATCCCAAGGAACTCCCAAAGAAAATGTATGCTGAGACTAAAACTTGATGTGATCAAGTACAGCCTCCGCGTCAGTGTTACAGTAAGTTTTAATTCCGAGAGATGCTAAAAAAATAGTTGAAATCGTTGCAGAACATGTCGAACGCAAAAATGCAGTGGCGAATTTGTCTAGTAGATGGGCAGGAAGCTATGCGAATACGAAATGCGGTTTAGAAGCAGGACTTTAAATGGAAGAGGACGTTG</canonical>
            <polymorphic>AAAATCTGACCTCACAGTGTCCGCCACATCGACACCAGCAAGATCAAAGCAGCTTCACAACATGCAAATTGTAATTAGTTTGTCAGAACAATCACATCGTTTTCCTCAAATGACTTCGACAACGAATAATGTGCTTGGAGTTAAAGAAGGTTCATTGGTAAGAAGTTGCAGTTACGTGATAATTAACACCCCTTATCCATCACAATTTTAGAGTGCACAACTCCATGATCTTCGACGGAGCAAGAAATTAAAACAGAGTGAATCAAGCTAGTCGATGAACAATCCAGAAAAATTCATTTCGGAGCTAACCAACCTGACACAAATCTTGGACTTCGATATGGATGCTAAGGAGAAACGACCGCGCAAAGAGAAGTGTGAACGTTATCACCAACTCAAAGAGAAAGATTTCCTGATCCAACTCTAGCAAAATGCCGAAGCCACCTTGCAGAACATGCCTGCGAAACACAATGAGCGAATGAATCCGATTGAGAAGCAAGTTYTGATACAGAATCATAACTTGCTTGGTACAAATGAAAACAAAGTCTGAGAATTGGACAAACGAACATCGAGAAAAGTGAGGTAAACCTTTCATAGAAATTATGTCTAATTTCGCAATGTTTCAGATAAGCATTGTAAACTTTTCAAGATTTCCCTTTTGCTTTTGCTCTCAGATACTTGCCCGCCAACAACGTGTAAGGAATCAAGTTGAGAAGAATCAGAAGATTGAACAGAGGATTTCACTCGAGCATCGACCAATGATCCCAAGGAACTCCCAAAGAAAATGTATGCTGAGACTAAAACTTGATGTGATCAAGTACAGCCTCCGCGTCAGTGTTACAGTAAGTTTTAATTCCGAGAGATGCTAAAAAAATAGTTGAAATCGTTGCAGAACATGTCGAACGCAAAAATGCAGTGGCGAATTTGTCTAGTAGATGGGCAGGAAGCTATGCGAATACGAAATGCGGTTTAGAAGCAGGACTTTAAATGGAAGAGGACGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTATCACCAACTCAAAGAGAAA</pcr_primer_p1>
		<pcr_primer_p2>TATCTGAAACATTGCGAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTATCACCAACTCAAAGAGAAAGATTTCCTGATCCAACTCTAGCAAAATGCCGAAGCCACCTTGCAGAACATGCCTGCGAAACACAATGAGCGAATGAATCCGATTGAGAAGCAAGTTTTGATACAGAATCATAACTTGCTTGGTACAAATGAAAACAAAGTCTGAGAATTGGACAAACGAACATCGAGAAAAGTGAGGTAAACCTTTCATAGAAATTATGTCTAATTTCGCAATGTTTCAGATA</canonical_amplicon>
		<polymorphic_amplicon>GTTATCACCAACTCAAAGAGAAAGATTTCCTGATCCAACTCTAGCAAAATGCCGAAGCCACCTTGCAGAACATGCCTGCGAAACACAATGAGCGAATGAATCCGATTGAGAAGCAAGTTYTGATACAGAATCATAACTTGCTTGGTACAAATGAAAACAAAGTCTGAGAATTGGACAAACGAACATCGAGAAAAGTGAGGTAAACCTTTCATAGAAATTATGTCTAATTTCGCAATGTTTCAGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30941</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>125493</contig_pos>
        <strand>+</strand>
        <context>TTTCAGATAA[A/G]CATTGTAAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGTAAACCTTTCATAGAAATTATGTCTAATTTCGCAATGTTTCAGATAA</left_flank>
        <right_flank>CATTGTAAACTTTTCAAGATTTCCCTTTTGCTTTTGCTCTCAGATACTTG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTGCTTGGAGTTAAAGAAGGTTCATTGGTAAGAAGTTGCAGTTACGTGATAATTAACACCCCTTATCCATCACAATTTTAGAGTGCACAACTCCATGATCTTCGACGGAGCAAGAAATTAAAACAGAGTGAATCAAGCTAGTCGATGAACAATCCAGAAAAATTCATTTCGGAGCTAACCAACCTGACACAAATCTTGGACTTCGATATGGATGCTAAGGAGAAACGACCGCGCAAAGAGAAGTGTGAACGTTATCACCAACTCAAAGAGAAAGATTTCCTGATCCAACTCTAGCAAAATGCCGAAGCCACCTTGCAGAACATGCCTGCGAAACACAATGAGCGAATGAATCCGATTGAGAAGCAAGTTTTGATACAGAATCATAACTTGCTTGGTACAAATGAAAACAAAGTCTGAGAATTGGACAAACGAACATCGAGAAAAGTGAGGTAAACCTTTCATAGAAATTATGTCTAATTTCGCAATGTTTCAGATAAGCATTGTAAACTTTTCAAGATTTCCCTTTTGCTTTTGCTCTCAGATACTTGCCCGCCAACAACGTGTAAGGAATCAAGTTGAGAAGAATCAGAAGATTGAACAGAGGATTTCACTCGAGCATCGACCAATGATCCCAAGGAACTCCCAAAGAAAATGTATGCTGAGACTAAAACTTGATGTGATCAAGTACAGCCTCCGCGTCAGTGTTACAGTAAGTTTTAATTCCGAGAGATGCTAAAAAAATAGTTGAAATCGTTGCAGAACATGTCGAACGCAAAAATGCAGTGGCGAATTTGTCTAGTAGATGGGCAGGAAGCTATGCGAATACGAAATGCGGTTTAGAAGCAGGACTTTAAATGGAAGAGGACGTTGCAGGCGCTCGAAGAATGCTCAAGGAATGTTGGCTCAAATGTCTCAGATGGATTATTGAAATGTGCAGCTTTCTCGAGGTAAGCGACTTTTTAAAGCAAACGACTTTTAGTGCAGAGGGCAAAGTATAG</canonical>
            <polymorphic>ATGTGCTTGGAGTTAAAGAAGGTTCATTGGTAAGAAGTTGCAGTTACGTGATAATTAACACCCCTTATCCATCACAATTTTAGAGTGCACAACTCCATGATCTTCGACGGAGCAAGAAATTAAAACAGAGTGAATCAAGCTAGTCGATGAACAATCCAGAAAAATTCATTTCGGAGCTAACCAACCTGACACAAATCTTGGACTTCGATATGGATGCTAAGGAGAAACGACCGCGCAAAGAGAAGTGTGAACGTTATCACCAACTCAAAGAGAAAGATTTCCTGATCCAACTCTAGCAAAATGCCGAAGCCACCTTGCAGAACATGCCTGCGAAACACAATGAGCGAATGAATCCGATTGAGAAGCAAGTTTTGATACAGAATCATAACTTGCTTGGTACAAATGAAAACAAAGTCTGAGAATTGGACAAACGAACATCGAGAAAAGTGAGGTAAACCTTTCATAGAAATTATGTCTAATTTCGCAATGTTTCAGATAARCATTGTAAACTTTTCAAGATTTCCCTTTTGCTTTTGCTCTCAGATACTTGCCCGCCAACAACGTGTAAGGAATCAAGTTGAGAAGAATCAGAAGATTGAACAGAGGATTTCACTCGAGCATCGACCAATGATCCCAAGGAACTCCCAAAGAAAATGTATGCTGAGACTAAAACTTGATGTGATCAAGTACAGCCTCCGCGTCAGTGTTACAGTAAGTTTTAATTCCGAGAGATGCTAAAAAAATAGTTGAAATCGTTGCAGAACATGTCGAACGCAAAAATGCAGTGGCGAATTTGTCTAGTAGATGGGCAGGAAGCTATGCGAATACGAAATGCGGTTTAGAAGCAGGACTTTAAATGGAAGAGGACGTTGCAGGCGCTCGAAGAATGCTCAAGGAATGTTGGCTCAAATGTCTCAGATGGATTATTGAAATGTGCAGCTTTCTCGAGGTAAGCGACTTTTTAAAGCAAACGACTTTTAGTGCAGAGGGCAAAGTATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGTCTGAGAATTGGACAAAC</pcr_primer_p1>
		<pcr_primer_p2>CATACATTTTCTTTGGGAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGTCTGAGAATTGGACAAACGAACATCGAGAAAAGTGAGGTAAACCTTTCATAGAAATTATGTCTAATTTCGCAATGTTTCAGATAAGCATTGTAAACTTTTCAAGATTTCCCTTTTGCTTTTGCTCTCAGATACTTGCCCGCCAACAACGTGTAAGGAATCAAGTTGAGAAGAATCAGAAGATTGAACAGAGGATTTCACTCGAGCATCGACCAATGATCCCAAGGAACTCCCAAAGAAAATGTATG</canonical_amplicon>
		<polymorphic_amplicon>AAAGTCTGAGAATTGGACAAACGAACATCGAGAAAAGTGAGGTAAACCTTTCATAGAAATTATGTCTAATTTCGCAATGTTTCAGATAARCATTGTAAACTTTTCAAGATTTCCCTTTTGCTTTTGCTCTCAGATACTTGCCCGCCAACAACGTGTAAGGAATCAAGTTGAGAAGAATCAGAAGATTGAACAGAGGATTTCACTCGAGCATCGACCAATGATCCCAAGGAACTCCCAAAGAAAATGTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30942</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>125547</contig_pos>
        <strand>+</strand>
        <context>ATACTTGCCC[A/G]CCAACAACGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTAAACTTTTCAAGATTTCCCTTTTGCTTTTGCTCTCAGATACTTGCCC</left_flank>
        <right_flank>CCAACAACGTGTAAGGAATCAAGTTGAGAAGAATCAGAAGATTGAACAGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAACACCCCTTATCCATCACAATTTTAGAGTGCACAACTCCATGATCTTCGACGGAGCAAGAAATTAAAACAGAGTGAATCAAGCTAGTCGATGAACAATCCAGAAAAATTCATTTCGGAGCTAACCAACCTGACACAAATCTTGGACTTCGATATGGATGCTAAGGAGAAACGACCGCGCAAAGAGAAGTGTGAACGTTATCACCAACTCAAAGAGAAAGATTTCCTGATCCAACTCTAGCAAAATGCCGAAGCCACCTTGCAGAACATGCCTGCGAAACACAATGAGCGAATGAATCCGATTGAGAAGCAAGTTTTGATACAGAATCATAACTTGCTTGGTACAAATGAAAACAAAGTCTGAGAATTGGACAAACGAACATCGAGAAAAGTGAGGTAAACCTTTCATAGAAATTATGTCTAATTTCGCAATGTTTCAGATAAGCATTGTAAACTTTTCAAGATTTCCCTTTTGCTTTTGCTCTCAGATACTTGCCCGCCAACAACGTGTAAGGAATCAAGTTGAGAAGAATCAGAAGATTGAACAGAGGATTTCACTCGAGCATCGACCAATGATCCCAAGGAACTCCCAAAGAAAATGTATGCTGAGACTAAAACTTGATGTGATCAAGTACAGCCTCCGCGTCAGTGTTACAGTAAGTTTTAATTCCGAGAGATGCTAAAAAAATAGTTGAAATCGTTGCAGAACATGTCGAACGCAAAAATGCAGTGGCGAATTTGTCTAGTAGATGGGCAGGAAGCTATGCGAATACGAAATGCGGTTTAGAAGCAGGACTTTAAATGGAAGAGGACGTTGCAGGCGCTCGAAGAATGCTCAAGGAATGTTGGCTCAAATGTCTCAGATGGATTATTGAAATGTGCAGCTTTCTCGAGGTAAGCGACTTTTTAAAGCAAACGACTTTTAGTGCAGAGGGCAAAGTATAGACTCTTCTAGTGTAACTCCACGATAATCATTTATTATGAAAGAATAAGAAAGTT</canonical>
            <polymorphic>TTAACACCCCTTATCCATCACAATTTTAGAGTGCACAACTCCATGATCTTCGACGGAGCAAGAAATTAAAACAGAGTGAATCAAGCTAGTCGATGAACAATCCAGAAAAATTCATTTCGGAGCTAACCAACCTGACACAAATCTTGGACTTCGATATGGATGCTAAGGAGAAACGACCGCGCAAAGAGAAGTGTGAACGTTATCACCAACTCAAAGAGAAAGATTTCCTGATCCAACTCTAGCAAAATGCCGAAGCCACCTTGCAGAACATGCCTGCGAAACACAATGAGCGAATGAATCCGATTGAGAAGCAAGTTTTGATACAGAATCATAACTTGCTTGGTACAAATGAAAACAAAGTCTGAGAATTGGACAAACGAACATCGAGAAAAGTGAGGTAAACCTTTCATAGAAATTATGTCTAATTTCGCAATGTTTCAGATAAGCATTGTAAACTTTTCAAGATTTCCCTTTTGCTTTTGCTCTCAGATACTTGCCCRCCAACAACGTGTAAGGAATCAAGTTGAGAAGAATCAGAAGATTGAACAGAGGATTTCACTCGAGCATCGACCAATGATCCCAAGGAACTCCCAAAGAAAATGTATGCTGAGACTAAAACTTGATGTGATCAAGTACAGCCTCCGCGTCAGTGTTACAGTAAGTTTTAATTCCGAGAGATGCTAAAAAAATAGTTGAAATCGTTGCAGAACATGTCGAACGCAAAAATGCAGTGGCGAATTTGTCTAGTAGATGGGCAGGAAGCTATGCGAATACGAAATGCGGTTTAGAAGCAGGACTTTAAATGGAAGAGGACGTTGCAGGCGCTCGAAGAATGCTCAAGGAATGTTGGCTCAAATGTCTCAGATGGATTATTGAAATGTGCAGCTTTCTCGAGGTAAGCGACTTTTTAAAGCAAACGACTTTTAGTGCAGAGGGCAAAGTATAGACTCTTCTAGTGTAACTCCACGATAATCATTTATTATGAAAGAATAAGAAAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>358 321 177 144</canonical_bands>
                <polymorphic_bands>465 358 177</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>322 274 224 180</canonical_bands>
                <polymorphic_bands>546 274 180</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGTCTGAGAATTGGACAAAC</pcr_primer_p1>
		<pcr_primer_p2>CATACATTTTCTTTGGGAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGTCTGAGAATTGGACAAACGAACATCGAGAAAAGTGAGGTAAACCTTTCATAGAAATTATGTCTAATTTCGCAATGTTTCAGATAAGCATTGTAAACTTTTCAAGATTTCCCTTTTGCTTTTGCTCTCAGATACTTGCCCGCCAACAACGTGTAAGGAATCAAGTTGAGAAGAATCAGAAGATTGAACAGAGGATTTCACTCGAGCATCGACCAATGATCCCAAGGAACTCCCAAAGAAAATGTATG</canonical_amplicon>
		<polymorphic_amplicon>AAAGTCTGAGAATTGGACAAACGAACATCGAGAAAAGTGAGGTAAACCTTTCATAGAAATTATGTCTAATTTCGCAATGTTTCAGATAAGCATTGTAAACTTTTCAAGATTTCCCTTTTGCTTTTGCTCTCAGATACTTGCCCRCCAACAACGTGTAAGGAATCAAGTTGAGAAGAATCAGAAGATTGAACAGAGGATTTCACTCGAGCATCGACCAATGATCCCAAGGAACTCCCAAAGAAAATGTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30943</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>125624</contig_pos>
        <strand>+</strand>
        <context>TCGACCAATG[A/T]TCCCAAGGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAAGAATCAGAAGATTGAACAGAGGATTTCACTCGAGCATCGACCAATG</left_flank>
        <right_flank>TCCCAAGGAACTCCCAAAGAAAATGTATGCTGAGACTAAAACTTGATGTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATCAAGCTAGTCGATGAACAATCCAGAAAAATTCATTTCGGAGCTAACCAACCTGACACAAATCTTGGACTTCGATATGGATGCTAAGGAGAAACGACCGCGCAAAGAGAAGTGTGAACGTTATCACCAACTCAAAGAGAAAGATTTCCTGATCCAACTCTAGCAAAATGCCGAAGCCACCTTGCAGAACATGCCTGCGAAACACAATGAGCGAATGAATCCGATTGAGAAGCAAGTTTTGATACAGAATCATAACTTGCTTGGTACAAATGAAAACAAAGTCTGAGAATTGGACAAACGAACATCGAGAAAAGTGAGGTAAACCTTTCATAGAAATTATGTCTAATTTCGCAATGTTTCAGATAAGCATTGTAAACTTTTCAAGATTTCCCTTTTGCTTTTGCTCTCAGATACTTGCCCGCCAACAACGTGTAAGGAATCAAGTTGAGAAGAATCAGAAGATTGAACAGAGGATTTCACTCGAGCATCGACCAATGATCCCAAGGAACTCCCAAAGAAAATGTATGCTGAGACTAAAACTTGATGTGATCAAGTACAGCCTCCGCGTCAGTGTTACAGTAAGTTTTAATTCCGAGAGATGCTAAAAAAATAGTTGAAATCGTTGCAGAACATGTCGAACGCAAAAATGCAGTGGCGAATTTGTCTAGTAGATGGGCAGGAAGCTATGCGAATACGAAATGCGGTTTAGAAGCAGGACTTTAAATGGAAGAGGACGTTGCAGGCGCTCGAAGAATGCTCAAGGAATGTTGGCTCAAATGTCTCAGATGGATTATTGAAATGTGCAGCTTTCTCGAGGTAAGCGACTTTTTAAAGCAAACGACTTTTAGTGCAGAGGGCAAAGTATAGACTCTTCTAGTGTAACTCCACGATAATCATTTATTATGAAAGAATAAGAAAGTTGAAGTTTTTCTGTTGATAATTATTGCACTTAAGGGCAGCGAAGCAGGTTGTGGAAGAGGTTCTGAAAATGCATTTTG</canonical>
            <polymorphic>GAATCAAGCTAGTCGATGAACAATCCAGAAAAATTCATTTCGGAGCTAACCAACCTGACACAAATCTTGGACTTCGATATGGATGCTAAGGAGAAACGACCGCGCAAAGAGAAGTGTGAACGTTATCACCAACTCAAAGAGAAAGATTTCCTGATCCAACTCTAGCAAAATGCCGAAGCCACCTTGCAGAACATGCCTGCGAAACACAATGAGCGAATGAATCCGATTGAGAAGCAAGTTTTGATACAGAATCATAACTTGCTTGGTACAAATGAAAACAAAGTCTGAGAATTGGACAAACGAACATCGAGAAAAGTGAGGTAAACCTTTCATAGAAATTATGTCTAATTTCGCAATGTTTCAGATAAGCATTGTAAACTTTTCAAGATTTCCCTTTTGCTTTTGCTCTCAGATACTTGCCCGCCAACAACGTGTAAGGAATCAAGTTGAGAAGAATCAGAAGATTGAACAGAGGATTTCACTCGAGCATCGACCAATGWTCCCAAGGAACTCCCAAAGAAAATGTATGCTGAGACTAAAACTTGATGTGATCAAGTACAGCCTCCGCGTCAGTGTTACAGTAAGTTTTAATTCCGAGAGATGCTAAAAAAATAGTTGAAATCGTTGCAGAACATGTCGAACGCAAAAATGCAGTGGCGAATTTGTCTAGTAGATGGGCAGGAAGCTATGCGAATACGAAATGCGGTTTAGAAGCAGGACTTTAAATGGAAGAGGACGTTGCAGGCGCTCGAAGAATGCTCAAGGAATGTTGGCTCAAATGTCTCAGATGGATTATTGAAATGTGCAGCTTTCTCGAGGTAAGCGACTTTTTAAAGCAAACGACTTTTAGTGCAGAGGGCAAAGTATAGACTCTTCTAGTGTAACTCCACGATAATCATTTATTATGAAAGAATAAGAAAGTTGAAGTTTTTCTGTTGATAATTATTGCACTTAAGGGCAGCGAAGCAGGTTGTGGAAGAGGTTCTGAAAATGCATTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>451 346 152 51</canonical_bands>
                <polymorphic_bands>451 397 152</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGTAAGGAATCAAGTTGAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TGCCCATCTACTAGACAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTGTAAGGAATCAAGTTGAGAAGAATCAGAAGATTGAACAGAGGATTTCACTCGAGCATCGACCAATGATCCCAAGGAACTCCCAAAGAAAATGTATGCTGAGACTAAAACTTGATGTGATCAAGTACAGCCTCCGCGTCAGTGTTACAGTAAGTTTTAATTCCGAGAGATGCTAAAAAAATAGTTGAAATCGTTGCAGAACATGTCGAACGCAAAAATGCAGTGGCGAATTTGTCTAGTAGATGGGCA</canonical_amplicon>
		<polymorphic_amplicon>GTGTAAGGAATCAAGTTGAGAAGAATCAGAAGATTGAACAGAGGATTTCACTCGAGCATCGACCAATGWTCCCAAGGAACTCCCAAAGAAAATGTATGCTGAGACTAAAACTTGATGTGATCAAGTACAGCCTCCGCGTCAGTGTTACAGTAAGTTTTAATTCCGAGAGATGCTAAAAAAATAGTTGAAATCGTTGCAGAACATGTCGAACGCAAAAATGCAGTGGCGAATTTGTCTAGTAGATGGGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30944</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>125668</contig_pos>
        <strand>+</strand>
        <context>GACTAAAACT[C/T]GATGTGATCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAATGATCCCAAGGAACTCCCAAAGAAAATGTATGCTGAGACTAAAACT</left_flank>
        <right_flank>GATGTGATCAAGTACAGCCTCCGCGTCAGTGTTACAGTAAGTTTTAATTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTAACCAACCTGACACAAATCTTGGACTTCGATATGGATGCTAAGGAGAAACGACCGCGCAAAGAGAAGTGTGAACGTTATCACCAACTCAAAGAGAAAGATTTCCTGATCCAACTCTAGCAAAATGCCGAAGCCACCTTGCAGAACATGCCTGCGAAACACAATGAGCGAATGAATCCGATTGAGAAGCAAGTTTTGATACAGAATCATAACTTGCTTGGTACAAATGAAAACAAAGTCTGAGAATTGGACAAACGAACATCGAGAAAAGTGAGGTAAACCTTTCATAGAAATTATGTCTAATTTCGCAATGTTTCAGATAAGCATTGTAAACTTTTCAAGATTTCCCTTTTGCTTTTGCTCTCAGATACTTGCCCGCCAACAACGTGTAAGGAATCAAGTTGAGAAGAATCAGAAGATTGAACAGAGGATTTCACTCGAGCATCGACCAATGATCCCAAGGAACTCCCAAAGAAAATGTATGCTGAGACTAAAACTTGATGTGATCAAGTACAGCCTCCGCGTCAGTGTTACAGTAAGTTTTAATTCCGAGAGATGCTAAAAAAATAGTTGAAATCGTTGCAGAACATGTCGAACGCAAAAATGCAGTGGCGAATTTGTCTAGTAGATGGGCAGGAAGCTATGCGAATACGAAATGCGGTTTAGAAGCAGGACTTTAAATGGAAGAGGACGTTGCAGGCGCTCGAAGAATGCTCAAGGAATGTTGGCTCAAATGTCTCAGATGGATTATTGAAATGTGCAGCTTTCTCGAGGTAAGCGACTTTTTAAAGCAAACGACTTTTAGTGCAGAGGGCAAAGTATAGACTCTTCTAGTGTAACTCCACGATAATCATTTATTATGAAAGAATAAGAAAGTTGAAGTTTTTCTGTTGATAATTATTGCACTTAAGGGCAGCGAAGCAGGTTGTGGAAGAGGTTCTGAAAATGCATTTTGAGAAAAAGTAGATTGAACCTTTTTAATTTTTGAAATGTTTATTG</canonical>
            <polymorphic>GCTAACCAACCTGACACAAATCTTGGACTTCGATATGGATGCTAAGGAGAAACGACCGCGCAAAGAGAAGTGTGAACGTTATCACCAACTCAAAGAGAAAGATTTCCTGATCCAACTCTAGCAAAATGCCGAAGCCACCTTGCAGAACATGCCTGCGAAACACAATGAGCGAATGAATCCGATTGAGAAGCAAGTTTTGATACAGAATCATAACTTGCTTGGTACAAATGAAAACAAAGTCTGAGAATTGGACAAACGAACATCGAGAAAAGTGAGGTAAACCTTTCATAGAAATTATGTCTAATTTCGCAATGTTTCAGATAAGCATTGTAAACTTTTCAAGATTTCCCTTTTGCTTTTGCTCTCAGATACTTGCCCGCCAACAACGTGTAAGGAATCAAGTTGAGAAGAATCAGAAGATTGAACAGAGGATTTCACTCGAGCATCGACCAATGATCCCAAGGAACTCCCAAAGAAAATGTATGCTGAGACTAAAACTYGATGTGATCAAGTACAGCCTCCGCGTCAGTGTTACAGTAAGTTTTAATTCCGAGAGATGCTAAAAAAATAGTTGAAATCGTTGCAGAACATGTCGAACGCAAAAATGCAGTGGCGAATTTGTCTAGTAGATGGGCAGGAAGCTATGCGAATACGAAATGCGGTTTAGAAGCAGGACTTTAAATGGAAGAGGACGTTGCAGGCGCTCGAAGAATGCTCAAGGAATGTTGGCTCAAATGTCTCAGATGGATTATTGAAATGTGCAGCTTTCTCGAGGTAAGCGACTTTTTAAAGCAAACGACTTTTAGTGCAGAGGGCAAAGTATAGACTCTTCTAGTGTAACTCCACGATAATCATTTATTATGAAAGAATAAGAAAGTTGAAGTTTTTCTGTTGATAATTATTGCACTTAAGGGCAGCGAAGCAGGTTGTGGAAGAGGTTCTGAAAATGCATTTTGAGAAAAAGTAGATTGAACCTTTTTAATTTTTGAAATGTTTATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTAAGGAATCAAGTTGAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TGCCCATCTACTAGACAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTGTAAGGAATCAAGTTGAGAAGAATCAGAAGATTGAACAGAGGATTTCACTCGAGCATCGACCAATGATCCCAAGGAACTCCCAAAGAAAATGTATGCTGAGACTAAAACTTGATGTGATCAAGTACAGCCTCCGCGTCAGTGTTACAGTAAGTTTTAATTCCGAGAGATGCTAAAAAAATAGTTGAAATCGTTGCAGAACATGTCGAACGCAAAAATGCAGTGGCGAATTTGTCTAGTAGATGGGCA</canonical_amplicon>
		<polymorphic_amplicon>GTGTAAGGAATCAAGTTGAGAAGAATCAGAAGATTGAACAGAGGATTTCACTCGAGCATCGACCAATGATCCCAAGGAACTCCCAAAGAAAATGTATGCTGAGACTAAAACTYGATGTGATCAAGTACAGCCTCCGCGTCAGTGTTACAGTAAGTTTTAATTCCGAGAGATGCTAAAAAAATAGTTGAAATCGTTGCAGAACATGTCGAACGCAAAAATGCAGTGGCGAATTTGTCTAGTAGATGGGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30945</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>125830</contig_pos>
        <strand>+</strand>
        <context>ACGAAATGCG[G/T]TKKAGAAGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGCGAATTTGTCTAGTAGATGGGCAGGAAGCTATGCGAATACGAAATGCG</left_flank>
        <right_flank>TTTAGAAGCAGGACTTTAAATGGAAGAGGACGTTGCAGGCGCTCGAAGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATGAGCGAATGAATCCGATTGAGAAGCAAGTTTTGATACAGAATCATAACTTGCTTGGTACAAATGAAAACAAAGTCTGAGAATTGGACAAACGAACATCGAGAAAAGTGAGGTAAACCTTTCATAGAAATTATGTCTAATTTCGCAATGTTTCAGATAAGCATTGTAAACTTTTCAAGATTTCCCTTTTGCTTTTGCTCTCAGATACTTGCCCGCCAACAACGTGTAAGGAATCAAGTTGAGAAGAATCAGAAGATTGAACAGAGGATTTCACTCGAGCATCGACCAATGATCCCAAGGAACTCCCAAAGAAAATGTATGCTGAGACTAAAACTTGATGTGATCAAGTACAGCCTCCGCGTCAGTGTTACAGTAAGTTTTAATTCCGAGAGATGCTAAAAAAATAGTTGAAATCGTTGCAGAACATGTCGAACGCAAAAATGCAGTGGCGAATTTGTCTAGTAGATGGGCAGGAAGCTATGCGAATACGAAATGCGGTTTAGAAGCAGGACTTTAAATGGAAGAGGACGTTGCAGGCGCTCGAAGAATGCTCAAGGAATGTTGGCTCAAATGTCTCAGATGGATTATTGAAATGTGCAGCTTTCTCGAGGTAAGCGACTTTTTAAAGCAAACGACTTTTAGTGCAGAGGGCAAAGTATAGACTCTTCTAGTGTAACTCCACGATAATCATTTATTATGAAAGAATAAGAAAGTTGAAGTTTTTCTGTTGATAATTATTGCACTTAAGGGCAGCGAAGCAGGTTGTGGAAGAGGTTCTGAAAATGCATTTTGAGAAAAAGTAGATTGAACCTTTTTAATTTTTGAAATGTTTATTGGTCGAAAGCTTTGATTAAGATAAAAATTTGAGAAATCCAAATGAAGGCTCTAAAATTCATAAAATTTGTAAAATTCGTAAACGTAAAATCATATCACTGTAGCTCACACTTTTTCCGAGACCAGCTCATGAAAAACAAAACGACGTTGATCATAGTAGATAG</canonical>
            <polymorphic>CAATGAGCGAATGAATCCGATTGAGAAGCAAGTTTTGATACAGAATCATAACTTGCTTGGTACAAATGAAAACAAAGTCTGAGAATTGGACAAACGAACATCGAGAAAAGTGAGGTAAACCTTTCATAGAAATTATGTCTAATTTCGCAATGTTTCAGATAAGCATTGTAAACTTTTCAAGATTTCCCTTTTGCTTTTGCTCTCAGATACTTGCCCGCCAACAACGTGTAAGGAATCAAGTTGAGAAGAATCAGAAGATTGAACAGAGGATTTCACTCGAGCATCGACCAATGATCCCAAGGAACTCCCAAAGAAAATGTATGCTGAGACTAAAACTTGATGTGATCAAGTACAGCCTCCGCGTCAGTGTTACAGTAAGTTTTAATTCCGAGAGATGCTAAAAAAATAGTTGAAATCGTTGCAGAACATGTCGAACGCAAAAATGCAGTGGCGAATTTGTCTAGTAGATGGGCAGGAAGCTATGCGAATACGAAATGCGKTTTAGAAGCAGGACTTTAAATGGAAGAGGACGTTGCAGGCGCTCGAAGAATGCTCAAGGAATGTTGGCTCAAATGTCTCAGATGGATTATTGAAATGTGCAGCTTTCTCGAGGTAAGCGACTTTTTAAAGCAAACGACTTTTAGTGCAGAGGGCAAAGTATAGACTCTTCTAGTGTAACTCCACGATAATCATTTATTATGAAAGAATAAGAAAGTTGAAGTTTTTCTGTTGATAATTATTGCACTTAAGGGCAGCGAAGCAGGTTGTGGAAGAGGTTCTGAAAATGCATTTTGAGAAAAAGTAGATTGAACCTTTTTAATTTTTGAAATGTTTATTGGTCGAAAGCTTTGATTAAGATAAAAATTTGAGAAATCCAAATGAAGGCTCTAAAATTCATAAAATTTGTAAAATTCGTAAACGTAAAATCATATCACTGTAGCTCACACTTTTTCCGAGACCAGCTCATGAAAAACAAAACGACGTTGATCATAGTAGATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGTCAGTGTTACAGTAAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>AGAAAGCTGCACATTTCAATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCGTCAGTGTTACAGTAAGTTTTAATTCCGAGAGATGCTAAAAAAATAGTTGAAATCGTTGCAGAACATGTCGAACGCAAAAATGCAGTGGCGAATTTGTCTAGTAGATGGGCAGGAAGCTATGCGAATACGAAATGCGGTTTAGAAGCAGGACTTTAAATGGAAGAGGACGTTGCAGGCGCTCGAAGAATGCTCAAGGAATGTTGGCTCAAATGTCTCAGATGGATTATTGAAATGTGCAGCTTTCT</canonical_amplicon>
		<polymorphic_amplicon>GCGTCAGTGTTACAGTAAGTTTTAATTCCGAGAGATGCTAAAAAAATAGTTGAAATCGTTGCAGAACATGTCGAACGCAAAAATGCAGTGGCGAATTTGTCTAGTAGATGGGCAGGAAGCTATGCGAATACGAAATGCGKTTTAGAAGCAGGACTTTAAATGGAAGAGGACGTTGCAGGCGCTCGAAGAATGCTCAAGGAATGTTGGCTCAAATGTCTCAGATGGATTATTGAAATGTGCAGCTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30946</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>125832</contig_pos>
        <strand>+</strand>
        <context>GAAATGCGKT[G/T]KAGAAGCAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGAATTTGTCTAGTAGATGGGCAGGAAGCTATGCGAATACGAAATGCGGT</left_flank>
        <right_flank>TAGAAGCAGGACTTTAAATGGAAGAGGACGTTGCAGGCGCTCGAAGAATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAGCGAATGAATCCGATTGAGAAGCAAGTTTTGATACAGAATCATAACTTGCTTGGTACAAATGAAAACAAAGTCTGAGAATTGGACAAACGAACATCGAGAAAAGTGAGGTAAACCTTTCATAGAAATTATGTCTAATTTCGCAATGTTTCAGATAAGCATTGTAAACTTTTCAAGATTTCCCTTTTGCTTTTGCTCTCAGATACTTGCCCGCCAACAACGTGTAAGGAATCAAGTTGAGAAGAATCAGAAGATTGAACAGAGGATTTCACTCGAGCATCGACCAATGATCCCAAGGAACTCCCAAAGAAAATGTATGCTGAGACTAAAACTTGATGTGATCAAGTACAGCCTCCGCGTCAGTGTTACAGTAAGTTTTAATTCCGAGAGATGCTAAAAAAATAGTTGAAATCGTTGCAGAACATGTCGAACGCAAAAATGCAGTGGCGAATTTGTCTAGTAGATGGGCAGGAAGCTATGCGAATACGAAATGCGGTTTAGAAGCAGGACTTTAAATGGAAGAGGACGTTGCAGGCGCTCGAAGAATGCTCAAGGAATGTTGGCTCAAATGTCTCAGATGGATTATTGAAATGTGCAGCTTTCTCGAGGTAAGCGACTTTTTAAAGCAAACGACTTTTAGTGCAGAGGGCAAAGTATAGACTCTTCTAGTGTAACTCCACGATAATCATTTATTATGAAAGAATAAGAAAGTTGAAGTTTTTCTGTTGATAATTATTGCACTTAAGGGCAGCGAAGCAGGTTGTGGAAGAGGTTCTGAAAATGCATTTTGAGAAAAAGTAGATTGAACCTTTTTAATTTTTGAAATGTTTATTGGTCGAAAGCTTTGATTAAGATAAAAATTTGAGAAATCCAAATGAAGGCTCTAAAATTCATAAAATTTGTAAAATTCGTAAACGTAAAATCATATCACTGTAGCTCACACTTTTTCCGAGACCAGCTCATGAAAAACAAAACGACGTTGATCATAGTAGATAGTG</canonical>
            <polymorphic>ATGAGCGAATGAATCCGATTGAGAAGCAAGTTTTGATACAGAATCATAACTTGCTTGGTACAAATGAAAACAAAGTCTGAGAATTGGACAAACGAACATCGAGAAAAGTGAGGTAAACCTTTCATAGAAATTATGTCTAATTTCGCAATGTTTCAGATAAGCATTGTAAACTTTTCAAGATTTCCCTTTTGCTTTTGCTCTCAGATACTTGCCCGCCAACAACGTGTAAGGAATCAAGTTGAGAAGAATCAGAAGATTGAACAGAGGATTTCACTCGAGCATCGACCAATGATCCCAAGGAACTCCCAAAGAAAATGTATGCTGAGACTAAAACTTGATGTGATCAAGTACAGCCTCCGCGTCAGTGTTACAGTAAGTTTTAATTCCGAGAGATGCTAAAAAAATAGTTGAAATCGTTGCAGAACATGTCGAACGCAAAAATGCAGTGGCGAATTTGTCTAGTAGATGGGCAGGAAGCTATGCGAATACGAAATGCGGTKTAGAAGCAGGACTTTAAATGGAAGAGGACGTTGCAGGCGCTCGAAGAATGCTCAAGGAATGTTGGCTCAAATGTCTCAGATGGATTATTGAAATGTGCAGCTTTCTCGAGGTAAGCGACTTTTTAAAGCAAACGACTTTTAGTGCAGAGGGCAAAGTATAGACTCTTCTAGTGTAACTCCACGATAATCATTTATTATGAAAGAATAAGAAAGTTGAAGTTTTTCTGTTGATAATTATTGCACTTAAGGGCAGCGAAGCAGGTTGTGGAAGAGGTTCTGAAAATGCATTTTGAGAAAAAGTAGATTGAACCTTTTTAATTTTTGAAATGTTTATTGGTCGAAAGCTTTGATTAAGATAAAAATTTGAGAAATCCAAATGAAGGCTCTAAAATTCATAAAATTTGTAAAATTCGTAAACGTAAAATCATATCACTGTAGCTCACACTTTTTCCGAGACCAGCTCATGAAAAACAAAACGACGTTGATCATAGTAGATAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGTCAGTGTTACAGTAAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>AGAAAGCTGCACATTTCAATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCGTCAGTGTTACAGTAAGTTTTAATTCCGAGAGATGCTAAAAAAATAGTTGAAATCGTTGCAGAACATGTCGAACGCAAAAATGCAGTGGCGAATTTGTCTAGTAGATGGGCAGGAAGCTATGCGAATACGAAATGCGGTTTAGAAGCAGGACTTTAAATGGAAGAGGACGTTGCAGGCGCTCGAAGAATGCTCAAGGAATGTTGGCTCAAATGTCTCAGATGGATTATTGAAATGTGCAGCTTTCT</canonical_amplicon>
		<polymorphic_amplicon>GCGTCAGTGTTACAGTAAGTTTTAATTCCGAGAGATGCTAAAAAAATAGTTGAAATCGTTGCAGAACATGTCGAACGCAAAAATGCAGTGGCGAATTTGTCTAGTAGATGGGCAGGAAGCTATGCGAATACGAAATGCGGTKTAGAAGCAGGACTTTAAATGGAAGAGGACGTTGCAGGCGCTCGAAGAATGCTCAAGGAATGTTGGCTCAAATGTCTCAGATGGATTATTGAAATGTGCAGCTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30947</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>125833</contig_pos>
        <strand>+</strand>
        <context>AAATGCGKTK[G/T]AGAAGCAGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAATTTGTCTAGTAGATGGGCAGGAAGCTATGCGAATACGAAATGCGGTT</left_flank>
        <right_flank>AGAAGCAGGACTTTAAATGGAAGAGGACGTTGCAGGCGCTCGAAGAATGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGCGAATGAATCCGATTGAGAAGCAAGTTTTGATACAGAATCATAACTTGCTTGGTACAAATGAAAACAAAGTCTGAGAATTGGACAAACGAACATCGAGAAAAGTGAGGTAAACCTTTCATAGAAATTATGTCTAATTTCGCAATGTTTCAGATAAGCATTGTAAACTTTTCAAGATTTCCCTTTTGCTTTTGCTCTCAGATACTTGCCCGCCAACAACGTGTAAGGAATCAAGTTGAGAAGAATCAGAAGATTGAACAGAGGATTTCACTCGAGCATCGACCAATGATCCCAAGGAACTCCCAAAGAAAATGTATGCTGAGACTAAAACTTGATGTGATCAAGTACAGCCTCCGCGTCAGTGTTACAGTAAGTTTTAATTCCGAGAGATGCTAAAAAAATAGTTGAAATCGTTGCAGAACATGTCGAACGCAAAAATGCAGTGGCGAATTTGTCTAGTAGATGGGCAGGAAGCTATGCGAATACGAAATGCGGTTTAGAAGCAGGACTTTAAATGGAAGAGGACGTTGCAGGCGCTCGAAGAATGCTCAAGGAATGTTGGCTCAAATGTCTCAGATGGATTATTGAAATGTGCAGCTTTCTCGAGGTAAGCGACTTTTTAAAGCAAACGACTTTTAGTGCAGAGGGCAAAGTATAGACTCTTCTAGTGTAACTCCACGATAATCATTTATTATGAAAGAATAAGAAAGTTGAAGTTTTTCTGTTGATAATTATTGCACTTAAGGGCAGCGAAGCAGGTTGTGGAAGAGGTTCTGAAAATGCATTTTGAGAAAAAGTAGATTGAACCTTTTTAATTTTTGAAATGTTTATTGGTCGAAAGCTTTGATTAAGATAAAAATTTGAGAAATCCAAATGAAGGCTCTAAAATTCATAAAATTTGTAAAATTCGTAAACGTAAAATCATATCACTGTAGCTCACACTTTTTCCGAGACCAGCTCATGAAAAACAAAACGACGTTGATCATAGTAGATAGTGA</canonical>
            <polymorphic>TGAGCGAATGAATCCGATTGAGAAGCAAGTTTTGATACAGAATCATAACTTGCTTGGTACAAATGAAAACAAAGTCTGAGAATTGGACAAACGAACATCGAGAAAAGTGAGGTAAACCTTTCATAGAAATTATGTCTAATTTCGCAATGTTTCAGATAAGCATTGTAAACTTTTCAAGATTTCCCTTTTGCTTTTGCTCTCAGATACTTGCCCGCCAACAACGTGTAAGGAATCAAGTTGAGAAGAATCAGAAGATTGAACAGAGGATTTCACTCGAGCATCGACCAATGATCCCAAGGAACTCCCAAAGAAAATGTATGCTGAGACTAAAACTTGATGTGATCAAGTACAGCCTCCGCGTCAGTGTTACAGTAAGTTTTAATTCCGAGAGATGCTAAAAAAATAGTTGAAATCGTTGCAGAACATGTCGAACGCAAAAATGCAGTGGCGAATTTGTCTAGTAGATGGGCAGGAAGCTATGCGAATACGAAATGCGGTTKAGAAGCAGGACTTTAAATGGAAGAGGACGTTGCAGGCGCTCGAAGAATGCTCAAGGAATGTTGGCTCAAATGTCTCAGATGGATTATTGAAATGTGCAGCTTTCTCGAGGTAAGCGACTTTTTAAAGCAAACGACTTTTAGTGCAGAGGGCAAAGTATAGACTCTTCTAGTGTAACTCCACGATAATCATTTATTATGAAAGAATAAGAAAGTTGAAGTTTTTCTGTTGATAATTATTGCACTTAAGGGCAGCGAAGCAGGTTGTGGAAGAGGTTCTGAAAATGCATTTTGAGAAAAAGTAGATTGAACCTTTTTAATTTTTGAAATGTTTATTGGTCGAAAGCTTTGATTAAGATAAAAATTTGAGAAATCCAAATGAAGGCTCTAAAATTCATAAAATTTGTAAAATTCGTAAACGTAAAATCATATCACTGTAGCTCACACTTTTTCCGAGACCAGCTCATGAAAAACAAAACGACGTTGATCATAGTAGATAGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGTCAGTGTTACAGTAAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>AGAAAGCTGCACATTTCAATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCGTCAGTGTTACAGTAAGTTTTAATTCCGAGAGATGCTAAAAAAATAGTTGAAATCGTTGCAGAACATGTCGAACGCAAAAATGCAGTGGCGAATTTGTCTAGTAGATGGGCAGGAAGCTATGCGAATACGAAATGCGGTTTAGAAGCAGGACTTTAAATGGAAGAGGACGTTGCAGGCGCTCGAAGAATGCTCAAGGAATGTTGGCTCAAATGTCTCAGATGGATTATTGAAATGTGCAGCTTTCT</canonical_amplicon>
		<polymorphic_amplicon>GCGTCAGTGTTACAGTAAGTTTTAATTCCGAGAGATGCTAAAAAAATAGTTGAAATCGTTGCAGAACATGTCGAACGCAAAAATGCAGTGGCGAATTTGTCTAGTAGATGGGCAGGAAGCTATGCGAATACGAAATGCGGTTKAGAAGCAGGACTTTAAATGGAAGAGGACGTTGCAGGCGCTCGAAGAATGCTCAAGGAATGTTGGCTCAAATGTCTCAGATGGATTATTGAAATGTGCAGCTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30948</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>125991</contig_pos>
        <strand>+</strand>
        <context>GGGCAAAGTA[C/T]AGACTCTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGTAAGCGACTTTTTAAAGCAAACGACTTTTAGTGCAGAGGGCAAAGTA</left_flank>
        <right_flank>AGACTCTTCTAGTGTAACTCCACGATAATCATTTATTATGAAAGAATAAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCATTGTAAACTTTTCAAGATTTCCCTTTTGCTTTTGCTCTCAGATACTTGCCCGCCAACAACGTGTAAGGAATCAAGTTGAGAAGAATCAGAAGATTGAACAGAGGATTTCACTCGAGCATCGACCAATGATCCCAAGGAACTCCCAAAGAAAATGTATGCTGAGACTAAAACTTGATGTGATCAAGTACAGCCTCCGCGTCAGTGTTACAGTAAGTTTTAATTCCGAGAGATGCTAAAAAAATAGTTGAAATCGTTGCAGAACATGTCGAACGCAAAAATGCAGTGGCGAATTTGTCTAGTAGATGGGCAGGAAGCTATGCGAATACGAAATGCGGTTTAGAAGCAGGACTTTAAATGGAAGAGGACGTTGCAGGCGCTCGAAGAATGCTCAAGGAATGTTGGCTCAAATGTCTCAGATGGATTATTGAAATGTGCAGCTTTCTCGAGGTAAGCGACTTTTTAAAGCAAACGACTTTTAGTGCAGAGGGCAAAGTATAGACTCTTCTAGTGTAACTCCACGATAATCATTTATTATGAAAGAATAAGAAAGTTGAAGTTTTTCTGTTGATAATTATTGCACTTAAGGGCAGCGAAGCAGGTTGTGGAAGAGGTTCTGAAAATGCATTTTGAGAAAAAGTAGATTGAACCTTTTTAATTTTTGAAATGTTTATTGGTCGAAAGCTTTGATTAAGATAAAAATTTGAGAAATCCAAATGAAGGCTCTAAAATTCATAAAATTTGTAAAATTCGTAAACGTAAAATCATATCACTGTAGCTCACACTTTTTCCGAGACCAGCTCATGAAAAACAAAACGACGTTGATCATAGTAGATAGTGACCGTACCGAAGTGCACACATAATTGGTTTCTCAACTCCTTCAAATCACATCCATTTCGAGAGAGACAGTTGGCCATTATGTTGTCGTTTGAACCATCACAGGTCATGTAGGCGCCTTTTTTACAAAACTCTGCTTAATACCTCTGACATCCCACCAAT</canonical>
            <polymorphic>AGCATTGTAAACTTTTCAAGATTTCCCTTTTGCTTTTGCTCTCAGATACTTGCCCGCCAACAACGTGTAAGGAATCAAGTTGAGAAGAATCAGAAGATTGAACAGAGGATTTCACTCGAGCATCGACCAATGATCCCAAGGAACTCCCAAAGAAAATGTATGCTGAGACTAAAACTTGATGTGATCAAGTACAGCCTCCGCGTCAGTGTTACAGTAAGTTTTAATTCCGAGAGATGCTAAAAAAATAGTTGAAATCGTTGCAGAACATGTCGAACGCAAAAATGCAGTGGCGAATTTGTCTAGTAGATGGGCAGGAAGCTATGCGAATACGAAATGCGGTTTAGAAGCAGGACTTTAAATGGAAGAGGACGTTGCAGGCGCTCGAAGAATGCTCAAGGAATGTTGGCTCAAATGTCTCAGATGGATTATTGAAATGTGCAGCTTTCTCGAGGTAAGCGACTTTTTAAAGCAAACGACTTTTAGTGCAGAGGGCAAAGTAYAGACTCTTCTAGTGTAACTCCACGATAATCATTTATTATGAAAGAATAAGAAAGTTGAAGTTTTTCTGTTGATAATTATTGCACTTAAGGGCAGCGAAGCAGGTTGTGGAAGAGGTTCTGAAAATGCATTTTGAGAAAAAGTAGATTGAACCTTTTTAATTTTTGAAATGTTTATTGGTCGAAAGCTTTGATTAAGATAAAAATTTGAGAAATCCAAATGAAGGCTCTAAAATTCATAAAATTTGTAAAATTCGTAAACGTAAAATCATATCACTGTAGCTCACACTTTTTCCGAGACCAGCTCATGAAAAACAAAACGACGTTGATCATAGTAGATAGTGACCGTACCGAAGTGCACACATAATTGGTTTCTCAACTCCTTCAAATCACATCCATTTCGAGAGAGACAGTTGGCCATTATGTTGTCGTTTGAACCATCACAGGTCATGTAGGCGCCTTTTTTACAAAACTCTGCTTAATACCTCTGACATCCCACCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAATGTCTCAGATGGATTATT</pcr_primer_p1>
		<pcr_primer_p2>GGTTCAATCTACTTTTTCTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TCAAATGTCTCAGATGGATTATTGAAATGTGCAGCTTTCTCGAGGTAAGCGACTTTTTAAAGCAAACGACTTTTAGTGCAGAGGGCAAAGTATAGACTCTTCTAGTGTAACTCCACGATAATCATTTATTATGAAAGAATAAGAAAGTTGAAGTTTTTCTGTTGATAATTATTGCACTTAAGGGCAGCGAAGCAGGTTGTGGAAGAGGTTCTGAAAATGCATTTTGAGAAAAAGTAGATTGAACC</canonical_amplicon>
		<polymorphic_amplicon>TCAAATGTCTCAGATGGATTATTGAAATGTGCAGCTTTCTCGAGGTAAGCGACTTTTTAAAGCAAACGACTTTTAGTGCAGAGGGCAAAGTAYAGACTCTTCTAGTGTAACTCCACGATAATCATTTATTATGAAAGAATAAGAAAGTTGAAGTTTTTCTGTTGATAATTATTGCACTTAAGGGCAGCGAAGCAGGTTGTGGAAGAGGTTCTGAAAATGCATTTTGAGAAAAAGTAGATTGAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30949</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>133698</contig_pos>
        <strand>+</strand>
        <context>TAAGTGCAGC[A/T]ACCATGCTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATGATCATTTGGAATCGAACGAGTTTTGGATTCGTAATTAAGTGCAGC</left_flank>
        <right_flank>ACCATGCTCAAAAAAGTTGTCTGTAATAAATATTGTGGTAGTTTCGGATG</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAACCTGCATCTACTGAGCCAAACACTTTCAAATTCTCAGCGACTCAACCAACCTACTGATAATGTTTTTTTCTTGAAATTAATAAACAAATGCAATGAAATGATTAAGTTTTTACAAATCTGTGTCAAATTTCAATCCGATTAGTTGTTTGGCATTGGTCGGTTTAATTTCAAATTTTTTGTTCCTATTTGTTAATTAATTGTATGTCCCAGAAACATTATCCCGAATAATATATCTTAGAAGTTTGAACCGACAGAATAAGTGAATTCGTTGTCCGATGCGAGAATTCCAAAGTCTACATAGTACCTTCTCAATGTCATTTTTAATGTCCTAAATCTTTCTTTCCAGAGTATCTTGCCACAAACAATCTGTCTACACCACCGATGACTCTACATAAAACCGTCAGCTTCTTTGAACTTCTACATTTAATAACCAAAAGGATTACAGAAATGATCATTTGGAATCGAACGAGTTTTGGATTCGTAATTAAGTGCAGCAACCATGCTCAAAAAAGTTGTCTGTAATAAATATTGTGGTAGTTTCGGATGATTCCTCTTCCACCCAATATTCACTATCGACATCAAAGCATGTAGCCAAGGCTGAGCAATGAGTCATCTTTTTCAATAAGGTTTATGACACTCTTACGGACCTTCGGAGACTCATTTTTGAAAGTCCATTAAAACATTTCTCTTTTGATAGCACTGAAAAATTTCACAACAGGATTTGCTGTCCCCACCTAGAAGCCGGAAAATCCATTAACATGTCTTATTTGTTAGTTGCTCCAGCTATAGGAAATAAAGATCTTTCAGATTCACTTGTTGCGATAGACCAAACTTTCTGAACTCACCAAAGTTCTTCGCACTCCAGTAATTTTTCATTCTTGGCTCTTCTCCCCTTCTTTTTCTGTCATTGCCTTTGTTTAAGAACATTTGTCAAATGGACTGCATTTCACTGTTTTTCGTCGCCGGTCCGTTTTTGTTGCTAATCCTGCTCCTTTT</canonical>
            <polymorphic>AGAACCTGCATCTACTGAGCCAAACACTTTCAAATTCTCAGCGACTCAACCAACCTACTGATAATGTTTTTTTCTTGAAATTAATAAACAAATGCAATGAAATGATTAAGTTTTTACAAATCTGTGTCAAATTTCAATCCGATTAGTTGTTTGGCATTGGTCGGTTTAATTTCAAATTTTTTGTTCCTATTTGTTAATTAATTGTATGTCCCAGAAACATTATCCCGAATAATATATCTTAGAAGTTTGAACCGACAGAATAAGTGAATTCGTTGTCCGATGCGAGAATTCCAAAGTCTACATAGTACCTTCTCAATGTCATTTTTAATGTCCTAAATCTTTCTTTCCAGAGTATCTTGCCACAAACAATCTGTCTACACCACCGATGACTCTACATAAAACCGTCAGCTTCTTTGAACTTCTACATTTAATAACCAAAAGGATTACAGAAATGATCATTTGGAATCGAACGAGTTTTGGATTCGTAATTAAGTGCAGCWACCATGCTCAAAAAAGTTGTCTGTAATAAATATTGTGGTAGTTTCGGATGATTCCTCTTCCACCCAATATTCACTATCGACATCAAAGCATGTAGCCAAGGCTGAGCAATGAGTCATCTTTTTCAATAAGGTTTATGACACTCTTACGGACCTTCGGAGACTCATTTTTGAAAGTCCATTAAAACATTTCTCTTTTGATAGCACTGAAAAATTTCACAACAGGATTTGCTGTCCCCACCTAGAAGCCGGAAAATCCATTAACATGTCTTATTTGTTAGTTGCTCCAGCTATAGGAAATAAAGATCTTTCAGATTCACTTGTTGCGATAGACCAAACTTTCTGAACTCACCAAAGTTCTTCGCACTCCAGTAATTTTTCATTCTTGGCTCTTCTCCCCTTCTTTTTCTGTCATTGCCTTTGTTTAAGAACATTTGTCAAATGGACTGCATTTCACTGTTTTTCGTCGCCGGTCCGTTTTTGTTGCTAATCCTGCTCCTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACCAAAAGGATTACAGAAATG</pcr_primer_p1>
		<pcr_primer_p2>TAATGGACTTTCAAAAATGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAACCAAAAGGATTACAGAAATGATCATTTGGAATCGAACGAGTTTTGGATTCGTAATTAAGTGCAGCAACCATGCTCAAAAAAGTTGTCTGTAATAAATATTGTGGTAGTTTCGGATGATTCCTCTTCCACCCAATATTCACTATCGACATCAAAGCATGTAGCCAAGGCTGAGCAATGAGTCATCTTTTTCAATAAGGTTTATGACACTCTTACGGACCTTCGGAGACTCATTTTTGAAAGTCCATTA</canonical_amplicon>
		<polymorphic_amplicon>TAACCAAAAGGATTACAGAAATGATCATTTGGAATCGAACGAGTTTTGGATTCGTAATTAAGTGCAGCWACCATGCTCAAAAAAGTTGTCTGTAATAAATATTGTGGTAGTTTCGGATGATTCCTCTTCCACCCAATATTCACTATCGACATCAAAGCATGTAGCCAAGGCTGAGCAATGAGTCATCTTTTTCAATAAGGTTTATGACACTCTTACGGACCTTCGGAGACTCATTTTTGAAAGTCCATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30950</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>134162</contig_pos>
        <strand>+</strand>
        <context>CTGTTTTTSG[C/G]CGCCGGTCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCCTTTGTTTAAGAACATTTGTCAAATGGACTGCATTTCACTGTTTTTCG</left_flank>
        <right_flank>CGCCGGTCCGTTTTTGTTGCTAATCCTGCTCCTTTTTCACTTTAATTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGAACGAGTTTTGGATTCGTAATTAAGTGCAGCAACCATGCTCAAAAAAGTTGTCTGTAATAAATATTGTGGTAGTTTCGGATGATTCCTCTTCCACCCAATATTCACTATCGACATCAAAGCATGTAGCCAAGGCTGAGCAATGAGTCATCTTTTTCAATAAGGTTTATGACACTCTTACGGACCTTCGGAGACTCATTTTTGAAAGTCCATTAAAACATTTCTCTTTTGATAGCACTGAAAAATTTCACAACAGGATTTGCTGTCCCCACCTAGAAGCCGGAAAATCCATTAACATGTCTTATTTGTTAGTTGCTCCAGCTATAGGAAATAAAGATCTTTCAGATTCACTTGTTGCGATAGACCAAACTTTCTGAACTCACCAAAGTTCTTCGCACTCCAGTAATTTTTCATTCTTGGCTCTTCTCCCCTTCTTTTTCTGTCATTGCCTTTGTTTAAGAACATTTGTCAAATGGACTGCATTTCACTGTTTTTCGTCGCCGGTCCGTTTTTGTTGCTAATCCTGCTCCTTTTTCACTTTAATTCTTTCAATTTATCATTAAGTAAGCCCAGACTCGCCGTGTACTCATCCTTCCATTTTCTTCTGGCAAACTATTCTGGCTCATTTTTTGGAAATTGTCTTCATTTCAGTATTCGAGATTTCACTTCAAAATTATTGCGGGTTCTGAAGAAAGTCTATTTTCAGTGGCCTTAAATTTTTAATTGCTGGACAAACCACCGGGAAAAATTTCGAAGATTTGCAAAAGTTAATTTTCAGTAGACTTCGTCTCGAAGTAGAAGCTATTCCATTTTTTTTGACTATTTGTGCTAGAAGCAACTTGTAAGTTTTATTTTATTTTCTATTTTTCGGAAAAATGTTGATACTTCAGATTCTACTCAAAATGCCAATTGCCGCACTGTTCTTAGCAACCAGTGATGAGAGAATGGAAAAACTCCGTGAAGATTGTCAGCTAGAAAATGAAAACAACAAGGAAGGG</canonical>
            <polymorphic>ATCGAACGAGTTTTGGATTCGTAATTAAGTGCAGCAACCATGCTCAAAAAAGTTGTCTGTAATAAATATTGTGGTAGTTTCGGATGATTCCTCTTCCACCCAATATTCACTATCGACATCAAAGCATGTAGCCAAGGCTGAGCAATGAGTCATCTTTTTCAATAAGGTTTATGACACTCTTACGGACCTTCGGAGACTCATTTTTGAAAGTCCATTAAAACATTTCTCTTTTGATAGCACTGAAAAATTTCACAACAGGATTTGCTGTCCCCACCTAGAAGCCGGAAAATCCATTAACATGTCTTATTTGTTAGTTGCTCCAGCTATAGGAAATAAAGATCTTTCAGATTCACTTGTTGCGATAGACCAAACTTTCTGAACTCACCAAAGTTCTTCGCACTCCAGTAATTTTTCATTCTTGGCTCTTCTCCCCTTCTTTTTCTGTCATTGCCTTTGTTTAAGAACATTTGTCAAATGGACTGCATTTCACTGTTTTTCGSCGCCGGTCCGTTTTTGTTGCTAATCCTGCTCCTTTTTCACTTTAATTCTTTCAATTTATCATTAAGTAAGCCCAGACTCGCCGTGTACTCATCCTTCCATTTTCTTCTGGCAAACTATTCTGGCTCATTTTTTGGAAATTGTCTTCATTTCAGTATTCGAGATTTCACTTCAAAATTATTGCGGGTTCTGAAGAAAGTCTATTTTCAGTGGCCTTAAATTTTTAATTGCTGGACAAACCACCGGGAAAAATTTCGAAGATTTGCAAAAGTTAATTTTCAGTAGACTTCGTCTCGAAGTAGAAGCTATTCCATTTTTTTTGACTATTTGTGCTAGAAGCAACTTGTAAGTTTTATTTTATTTTCTATTTTTCGGAAAAATGTTGATACTTCAGATTCTACTCAAAATGCCAATTGCCGCACTGTTCTTAGCAACCAGTGATGAGAGAATGGAAAAACTCCGTGAAGATTGTCAGCTAGAAAATGAAAACAACAAGGAAGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGACCAAACTTTCTGAACTCAC</pcr_primer_p1>
		<pcr_primer_p2>AGAAGAAAATGGAAGGATGAGTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TAGACCAAACTTTCTGAACTCACCAAAGTTCTTCGCACTCCAGTAATTTTTCATTCTTGGCTCTTCTCCCCTTCTTTTTCTGTCATTGCCTTTGTTTAAGAACATTTGTCAAATGGACTGCATTTCACTGTTTTTCGTCGCCGGTCCGTTTTTGTTGCTAATCCTGCTCCTTTTTCACTTTAATTCTTTCAATTTATCATTAAGTAAGCCCAGACTCGCCGTGTACTCATCCTTCCATTTTCTTCT</canonical_amplicon>
		<polymorphic_amplicon>TAGACCAAACTTTCTGAACTCACCAAAGTTCTTCGCACTCCAGTAATTTTTCATTCTTGGCTCTTCTCCCCTTCTTTTTCTGTCATTGCCTTTGTTTAAGAACATTTGTCAAATGGACTGCATTTCACTGTTTTTCGSCGCCGGTCCGTTTTTGTTGCTAATCCTGCTCCTTTTTCACTTTAATTCTTTCAATTTATCATTAAGTAAGCCCAGACTCGCCGTGTACTCATCCTTCCATTTTCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30951</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>184672</contig_pos>
        <strand>+</strand>
        <context>AAGAAGAGCG[G/T]GAATGTGGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCGGTGGGGTCACTGAACGAACGCGACGAGCGGTGGAGGAAAGAAGAGCG</left_flank>
        <right_flank>GAATGTGGTACAATAAAAAGAAACAAACAGAGCAAAAAAAGAAAGGAAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTTTCTTTCAGTTGTGAGAACCTTCTTGCATTTCGACTACCAGAATTCGAATCCTTGTCAGTCCAATCATGGCCAACGCCAGACTTCATATCTTCTTAATCCTTTACGCTGTGATTTCTGGAATTGAGATTTTTTGATTTTTTATAACATCATGGAACGTCACAACCAAAGACTCACTGTTTTTTTAGTGCCAGTAGTTGACAGATCCATCTTTTGAAATAATTTGAGTCGATAGATTTAGCAGAATAGGTAGTAATAAAGCAATAAATGTTATTGGAAAATAAGACGTGTGTTACTCGCACTCTCGTAAATCGACACGTCTCTCAATTGTAGCCCACACTTTTTTCTCTCAGCCGCGTTTGCGTGTGCGTTGCGATCAGCCTGCGATTCCGTGCAACATACACCTGCGAAAGAGCACACGATATGAAGAGACCGCTGAGATAATGTGCGGTGGGGTCACTGAACGAACGCGACGAGCGGTGGAGGAAAGAAGAGCGTGAATGTGGTACAATAAAAAGAAACAAACAGAGCAAAAAAAGAAAGGAAATAAAATTGTTTGAAAATACAAGCCACGTATGTTTATAGAACATTTTCTTCAAAAATTCACTTTTCAATTTTGTTTTTTCGGTGGGAATCTTTAAAAAACATGCAGACTTAGCTACGCATTTTGGGAATAAAAATAAAATAATGATCTGTATTCTCTCCAGAAATCTCAGGAAGTGAAATTTTTCCCGAAGTCGGAAGTAGAAAGTAGGAAGTAAAAATTGAAATAGGGAGTCTGAAGTCGGAATTCCTGAAAACTCTGATTCTCCCTACGGTTATCTAAATGTCTATAAAGTATGAATTTGGCTAGTTCTCAATCGTTGCGGAGCAATTTTCAGGGGAAAGTCGTTTGAAGCCATACTAAATTCTGTATAGTTTTGTATTCTTTCTACAAATTTCATGCATTATTTTTTCCATCTTTTTTACCTTTTTTTCTATTGTTCTCATCCACATTG</canonical>
            <polymorphic>CGTTTTCTTTCAGTTGTGAGAACCTTCTTGCATTTCGACTACCAGAATTCGAATCCTTGTCAGTCCAATCATGGCCAACGCCAGACTTCATATCTTCTTAATCCTTTACGCTGTGATTTCTGGAATTGAGATTTTTTGATTTTTTATAACATCATGGAACGTCACAACCAAAGACTCACTGTTTTTTTAGTGCCAGTAGTTGACAGATCCATCTTTTGAAATAATTTGAGTCGATAGATTTAGCAGAATAGGTAGTAATAAAGCAATAAATGTTATTGGAAAATAAGACGTGTGTTACTCGCACTCTCGTAAATCGACACGTCTCTCAATTGTAGCCCACACTTTTTTCTCTCAGCCGCGTTTGCGTGTGCGTTGCGATCAGCCTGCGATTCCGTGCAACATACACCTGCGAAAGAGCACACGATATGAAGAGACCGCTGAGATAATGTGCGGTGGGGTCACTGAACGAACGCGACGAGCGGTGGAGGAAAGAAGAGCGKGAATGTGGTACAATAAAAAGAAACAAACAGAGCAAAAAAAGAAAGGAAATAAAATTGTTTGAAAATACAAGCCACGTATGTTTATAGAACATTTTCTTCAAAAATTCACTTTTCAATTTTGTTTTTTCGGTGGGAATCTTTAAAAAACATGCAGACTTAGCTACGCATTTTGGGAATAAAAATAAAATAATGATCTGTATTCTCTCCAGAAATCTCAGGAAGTGAAATTTTTCCCGAAGTCGGAAGTAGAAAGTAGGAAGTAAAAATTGAAATAGGGAGTCTGAAGTCGGAATTCCTGAAAACTCTGATTCTCCCTACGGTTATCTAAATGTCTATAAAGTATGAATTTGGCTAGTTCTCAATCGTTGCGGAGCAATTTTCAGGGGAAAGTCGTTTGAAGCCATACTAAATTCTGTATAGTTTTGTATTCTTTCTACAAATTTCATGCATTATTTTTTCCATCTTTTTTACCTTTTTTTCTATTGTTCTCATCCACATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>271 100 97 92 67 49 34 29 27 26 24 23 20 18 17 16 14 14 14 9 9 6 6 5 5 2 2 2 2</canonical_bands>
                <polymorphic_bands>271 100 97 92 67 49 34 29 27 26 24 23 23 20 18 16 14 14 14 9 9 6 5 5 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATGAAGAGACCGCTGAGATA</pcr_primer_p1>
		<pcr_primer_p2>CAAAATGCGTAGCTAAGTCTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATATGAAGAGACCGCTGAGATAATGTGCGGTGGGGTCACTGAACGAACGCGACGAGCGGTGGAGGAAAGAAGAGCGTGAATGTGGTACAATAAAAAGAAACAAACAGAGCAAAAAAAGAAAGGAAATAAAATTGTTTGAAAATACAAGCCACGTATGTTTATAGAACATTTTCTTCAAAAATTCACTTTTCAATTTTGTTTTTTCGGTGGGAATCTTTAAAAAACATGCAGACTTAGCTACGCATTTTG</canonical_amplicon>
		<polymorphic_amplicon>ATATGAAGAGACCGCTGAGATAATGTGCGGTGGGGTCACTGAACGAACGCGACGAGCGGTGGAGGAAAGAAGAGCGKGAATGTGGTACAATAAAAAGAAACAAACAGAGCAAAAAAAGAAAGGAAATAAAATTGTTTGAAAATACAAGCCACGTATGTTTATAGAACATTTTCTTCAAAAATTCACTTTTCAATTTTGTTTTTTCGGTGGGAATCTTTAAAAAACATGCAGACTTAGCTACGCATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30952</snp_id>
        <super_contig>c005701202.Contig4</super_contig>
        <contig_pos>185031</contig_pos>
        <strand>+</strand>
        <context>TGGCTAGTTC[G/T]CAATCGTTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCTCCCTACGGTTATCTAAATGTCTATAAAGTATGAATTTGGCTAGTTC</left_flank>
        <right_flank>CAATCGTTGCGGAGCAATTTTCAGGGGAAAGTCGTTTGAAGCCATACTAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTGCGTGTGCGTTGCGATCAGCCTGCGATTCCGTGCAACATACACCTGCGAAAGAGCACACGATATGAAGAGACCGCTGAGATAATGTGCGGTGGGGTCACTGAACGAACGCGACGAGCGGTGGAGGAAAGAAGAGCGTGAATGTGGTACAATAAAAAGAAACAAACAGAGCAAAAAAAGAAAGGAAATAAAATTGTTTGAAAATACAAGCCACGTATGTTTATAGAACATTTTCTTCAAAAATTCACTTTTCAATTTTGTTTTTTCGGTGGGAATCTTTAAAAAACATGCAGACTTAGCTACGCATTTTGGGAATAAAAATAAAATAATGATCTGTATTCTCTCCAGAAATCTCAGGAAGTGAAATTTTTCCCGAAGTCGGAAGTAGAAAGTAGGAAGTAAAAATTGAAATAGGGAGTCTGAAGTCGGAATTCCTGAAAACTCTGATTCTCCCTACGGTTATCTAAATGTCTATAAAGTATGAATTTGGCTAGTTCTCAATCGTTGCGGAGCAATTTTCAGGGGAAAGTCGTTTGAAGCCATACTAAATTCTGTATAGTTTTGTATTCTTTCTACAAATTTCATGCATTATTTTTTCCATCTTTTTTACCTTTTTTTCTATTGTTCTCATCCACATTGCTCAGTCTTAACACCCTCGCTGTATTGTAATTTACACTCTTTGACGACAGGAGACGGTCGCCTGAGGCCGTACACCTTTTTTCTTTGTTCTCTCATTTGTTTATTTTTCACTATTCCAGTCATCACTAGTGTGTTGTAATGACCTTCTAAACTCTCCCCTATCGATTTATTCATATTTCCTCACATTTCTCACATGTGTTAGTCGTCCCCAGCGCACTATATGGTATTGATTGTGTCATTCTCTGCGCAACTGCCCGAACGACACCCTCTTCTTCTTTTTTGCCTCCTTTTTCTTGCCATTCTTCTCAAATGTTCCTAAATGCTACAAATCAATATTCTTATTTTGAAAATTTCAGACT</canonical>
            <polymorphic>GTTTGCGTGTGCGTTGCGATCAGCCTGCGATTCCGTGCAACATACACCTGCGAAAGAGCACACGATATGAAGAGACCGCTGAGATAATGTGCGGTGGGGTCACTGAACGAACGCGACGAGCGGTGGAGGAAAGAAGAGCGTGAATGTGGTACAATAAAAAGAAACAAACAGAGCAAAAAAAGAAAGGAAATAAAATTGTTTGAAAATACAAGCCACGTATGTTTATAGAACATTTTCTTCAAAAATTCACTTTTCAATTTTGTTTTTTCGGTGGGAATCTTTAAAAAACATGCAGACTTAGCTACGCATTTTGGGAATAAAAATAAAATAATGATCTGTATTCTCTCCAGAAATCTCAGGAAGTGAAATTTTTCCCGAAGTCGGAAGTAGAAAGTAGGAAGTAAAAATTGAAATAGGGAGTCTGAAGTCGGAATTCCTGAAAACTCTGATTCTCCCTACGGTTATCTAAATGTCTATAAAGTATGAATTTGGCTAGTTCKCAATCGTTGCGGAGCAATTTTCAGGGGAAAGTCGTTTGAAGCCATACTAAATTCTGTATAGTTTTGTATTCTTTCTACAAATTTCATGCATTATTTTTTCCATCTTTTTTACCTTTTTTTCTATTGTTCTCATCCACATTGCTCAGTCTTAACACCCTCGCTGTATTGTAATTTACACTCTTTGACGACAGGAGACGGTCGCCTGAGGCCGTACACCTTTTTTCTTTGTTCTCTCATTTGTTTATTTTTCACTATTCCAGTCATCACTAGTGTGTTGTAATGACCTTCTAAACTCTCCCCTATCGATTTATTCATATTTCCTCACATTTCTCACATGTGTTAGTCGTCCCCAGCGCACTATATGGTATTGATTGTGTCATTCTCTGCGCAACTGCCCGAACGACACCCTCTTCTTCTTTTTTGCCTCCTTTTTCTTGCCATTCTTCTCAAATGTTCCTAAATGCTACAAATCAATATTCTTATTTTGAAAATTTCAGACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCATTTTGGGAATAAAAATAAA</pcr_primer_p1>
		<pcr_primer_p2>CAGAATTTAGTATGGCTTCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCATTTTGGGAATAAAAATAAAATAATGATCTGTATTCTCTCCAGAAATCTCAGGAAGTGAAATTTTTCCCGAAGTCGGAAGTAGAAAGTAGGAAGTAAAAATTGAAATAGGGAGTCTGAAGTCGGAATTCCTGAAAACTCTGATTCTCCCTACGGTTATCTAAATGTCTATAAAGTATGAATTTGGCTAGTTCTCAATCGTTGCGGAGCAATTTTCAGGGGAAAGTCGTTTGAAGCCATACTAAATTCTG</canonical_amplicon>
		<polymorphic_amplicon>GCATTTTGGGAATAAAAATAAAATAATGATCTGTATTCTCTCCAGAAATCTCAGGAAGTGAAATTTTTCCCGAAGTCGGAAGTAGAAAGTAGGAAGTAAAAATTGAAATAGGGAGTCTGAAGTCGGAATTCCTGAAAACTCTGATTCTCCCTACGGTTATCTAAATGTCTATAAAGTATGAATTTGGCTAGTTCKCAATCGTTGCGGAGCAATTTTCAGGGGAAAGTCGTTTGAAGCCATACTAAATTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30953</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>20308</contig_pos>
        <strand>+</strand>
        <context>CTAGAGATCG[A/G]AGGGCTaaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGATATAATAGATCTCAAGACACAAATAAAGGGGCGAAAGCTAGAGATCG</left_flank>
        <right_flank>AGGGCTAAAAATTTCTTAAAACTTCATTTAAACAATTTGAAACCTTAAAA</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGCCCGGAAAACCCAAAGTGGGCGGAGCATTGCCGTGTTTAGGCTCATTTTGAAGCTCTTGACTTGCTAAATTCAAATTTTGACATTTTTTCAGACAAAAACGTGTAGATTTTTCGAAAATCCATTTTTCAAAAATGCTCAAAATCCAAAAATGTGTGACTTTGCTCAAAACTTAAATTTTTGAAATTTTTAAACTTTTCATAACTCCCTGATCCTGAGTTTTTCCTAAATCTATGCCTCGGATGTCTGCGGTCATTTTATTAGTACTAAAATTTATAATAGACGACAAGAAGAGAGAGGCTTGTCTTATTATCTTTATATCCTTTTCCTCTTCTTGCTCTCCGATTGCTAATCCTTGGAAACTTGTCCGCTTTCGTTATTATTATTATTATGATCCATTCGGAAAAGGGAAAACATGAGCAATTTGGACTCAAATTACACCTCGTCGAGATATAATAGATCTCAAGACACAAATAAAGGGGCGAAAGCTAGAGATCGGAGGGCTAAAAATTTCTTAAAACTTCATTTAAACAATTTGAAACCTTAAAATTTGAATTTCCCATCAAATTCTCGTCATTTTGAGCCCAAAATCGACTATTTTGGGTGATTTTGAAGGGAATTTCACTTTTGGCTCAGTTGGTAATCATTCTGGCCAGTGAAAAAAATGTCCACGGGTTCGATTCCCTCTGGGGTCAAAACGTTTTTTTTCTTTTTTCAAGATTTTCTGGGATTTTAACTGACTCCGATTTTCAAAGTTTTCGAAATATTCCAAAAAAAATTTTCAAAATTTTCCGAAGTAGAATTTCAAGCTTTGCAACCTGAAATTTTGAATTTACTGTCAAATTCCCATCATTTTAAGCCCAACATTGTCTTCTTTAGACGATACTTAAAGGAAATTGCCTTTTTGGCGCAGCTGGTAAACGCTCTGGCCAGTGAAAAATAGTTCACGGGTTCGAACCCCGCCGGGGCCAAAATGTTTTTCTTCTTTTTTTAGAGTGT</canonical>
            <polymorphic>GCGCCCGGAAAACCCAAAGTGGGCGGAGCATTGCCGTGTTTAGGCTCATTTTGAAGCTCTTGACTTGCTAAATTCAAATTTTGACATTTTTTCAGACAAAAACGTGTAGATTTTTCGAAAATCCATTTTTCAAAAATGCTCAAAATCCAAAAATGTGTGACTTTGCTCAAAACTTAAATTTTTGAAATTTTTAAACTTTTCATAACTCCCTGATCCTGAGTTTTTCCTAAATCTATGCCTCGGATGTCTGCGGTCATTTTATTAGTACTAAAATTTATAATAGACGACAAGAAGAGAGAGGCTTGTCTTATTATCTTTATATCCTTTTCCTCTTCTTGCTCTCCGATTGCTAATCCTTGGAAACTTGTCCGCTTTCGTTATTATTATTATTATGATCCATTCGGAAAAGGGAAAACATGAGCAATTTGGACTCAAATTACACCTCGTCGAGATATAATAGATCTCAAGACACAAATAAAGGGGCGAAAGCTAGAGATCGRAGGGCTAAAAATTTCTTAAAACTTCATTTAAACAATTTGAAACCTTAAAATTTGAATTTCCCATCAAATTCTCGTCATTTTGAGCCCAAAATCGACTATTTTGGGTGATTTTGAAGGGAATTTCACTTTTGGCTCAGTTGGTAATCATTCTGGCCAGTGAAAAAAATGTCCACGGGTTCGATTCCCTCTGGGGTCAAAACGTTTTTTTTCTTTTTTCAAGATTTTCTGGGATTTTAACTGACTCCGATTTTCAAAGTTTTCGAAATATTCCAAAAAAAATTTTCAAAATTTTCCGAAGTAGAATTTCAAGCTTTGCAACCTGAAATTTTGAATTTACTGTCAAATTCCCATCATTTTAAGCCCAACATTGTCTTCTTTAGACGATACTTAAAGGAAATTGCCTTTTTGGCGCAGCTGGTAAACGCTCTGGCCAGTGAAAAATAGTTCACGGGTTCGAACCCCGCCGGGGCCAAAATGTTTTTCTTCTTTTTTTAGAGTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>246 206 148 102 96 94 59 49</canonical_bands>
                <polymorphic_bands>342 206 148 102 94 59 49</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACATGAGCAATTTGGAC</pcr_primer_p1>
		<pcr_primer_p2>TCACTGGCCAGAATGATTAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAACATGAGCAATTTGGACTCAAATTACACCTCGTCGAGATATAATAGATCTCAAGACACAAATAAAGGGGCGAAAGCTAGAGATCGGAGGGCTAAAAATTTCTTAAAACTTCATTTAAACAATTTGAAACCTTAAAATTTGAATTTCCCATCAAATTCTCGTCATTTTGAGCCCAAAATCGACTATTTTGGGTGATTTTGAAGGGAATTTCACTTTTGGCTCAGTTGGTAATCATTCTGGCCAGTGA</canonical_amplicon>
		<polymorphic_amplicon>AAAACATGAGCAATTTGGACTCAAATTACACCTCGTCGAGATATAATAGATCTCAAGACACAAATAAAGGGGCGAAAGCTAGAGATCGRAGGGCTAAAAATTTCTTAAAACTTCATTTAAACAATTTGAAACCTTAAAATTTGAATTTCCCATCAAATTCTCGTCATTTTGAGCCCAAAATCGACTATTTTGGGTGATTTTGAAGGGAATTTCACTTTTGGCTCAGTTGGTAATCATTCTGGCCAGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30954</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>20323</contig_pos>
        <strand></strand>
        <context>CTaaaaattt[C/A]ttaaaacttc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CAAGACACAAATAAAGGGGCGAAAGCTAGAGATCGGAGGGCTAAAAATTT</left_flank>
        <right_flank>TTAAAACTTCATTTAAACAATTTGAAACCTTAAAATTTGAATTTCCCATC</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTGGGCGGAGCATTGCCGTGTTTAGGCTCATTTTGAAGCTCTTGACTTGCTAAATTCAAATTTTGACATTTTTTCAGACAAAAACGTGTAGATTTTTCGAAAATCCATTTTTCAAAAATGCTCAAAATCCAAAAATGTGTGACTTTGCTCAAAACTTAAATTTTTGAAATTTTTAAACTTTTCATAACTCCCTGATCCTGAGTTTTTCCTAAATCTATGCCTCGGATGTCTGCGGTCATTTTATTAGTACTAAAATTTATAATAGACGACAAGAAGAGAGAGGCTTGTCTTATTATCTTTATATCCTTTTCCTCTTCTTGCTCTCCGATTGCTAATCCTTGGAAACTTGTCCGCTTTCGTTATTATTATTATTATGATCCATTCGGAAAAGGGAAAACATGAGCAATTTGGACTCAAATTACACCTCGTCGAGATATAATAGATCTCAAGACACAAATAAAGGGGCGAAAGCTAGAGATCGGAGGGCTAAAAATTTCTTAAAACTTCATTTAAACAATTTGAAACCTTAAAATTTGAATTTCCCATCAAATTCTCGTCATTTTGAGCCCAAAATCGACTATTTTGGGTGATTTTGAAGGGAATTTCACTTTTGGCTCAGTTGGTAATCATTCTGGCCAGTGAAAAAAATGTCCACGGGTTCGATTCCCTCTGGGGTCAAAACGTTTTTTTTCTTTTTTCAAGATTTTCTGGGATTTTAACTGACTCCGATTTTCAAAGTTTTCGAAATATTCCAAAAAAAATTTTCAAAATTTTCCGAAGTAGAATTTCAAGCTTTGCAACCTGAAATTTTGAATTTACTGTCAAATTCCCATCATTTTAAGCCCAACATTGTCTTCTTTAGACGATACTTAAAGGAAATTGCCTTTTTGGCGCAGCTGGTAAACGCTCTGGCCAGTGAAAAATAGTTCACGGGTTCGAACCCCGCCGGGGCCAAAATGTTTTTCTTCTTTTTTTAGAGTGTTTTAAGACTGTTTAA</canonical>
            <polymorphic>AAAGTGGGCGGAGCATTGCCGTGTTTAGGCTCATTTTGAAGCTCTTGACTTGCTAAATTCAAATTTTGACATTTTTTCAGACAAAAACGTGTAGATTTTTCGAAAATCCATTTTTCAAAAATGCTCAAAATCCAAAAATGTGTGACTTTGCTCAAAACTTAAATTTTTGAAATTTTTAAACTTTTCATAACTCCCTGATCCTGAGTTTTTCCTAAATCTATGCCTCGGATGTCTGCGGTCATTTTATTAGTACTAAAATTTATAATAGACGACAAGAAGAGAGAGGCTTGTCTTATTATCTTTATATCCTTTTCCTCTTCTTGCTCTCCGATTGCTAATCCTTGGAAACTTGTCCGCTTTCGTTATTATTATTATTATGATCCATTCGGAAAAGGGAAAACATGAGCAATTTGGACTCAAATTACACCTCGTCGAGATATAATAGATCTCAAGACACAAATAAAGGGGCGAAAGCTAGAGATCGGAGGGCTAAAAATTTMTTAAAACTTCATTTAAACAATTTGAAACCTTAAAATTTGAATTTCCCATCAAATTCTCGTCATTTTGAGCCCAAAATCGACTATTTTGGGTGATTTTGAAGGGAATTTCACTTTTGGCTCAGTTGGTAATCATTCTGGCCAGTGAAAAAAATGTCCACGGGTTCGATTCCCTCTGGGGTCAAAACGTTTTTTTTCTTTTTTCAAGATTTTCTGGGATTTTAACTGACTCCGATTTTCAAAGTTTTCGAAATATTCCAAAAAAAATTTTCAAAATTTTCCGAAGTAGAATTTCAAGCTTTGCAACCTGAAATTTTGAATTTACTGTCAAATTCCCATCATTTTAAGCCCAACATTGTCTTCTTTAGACGATACTTAAAGGAAATTGCCTTTTTGGCGCAGCTGGTAAACGCTCTGGCCAGTGAAAAATAGTTCACGGGTTCGAACCCCGCCGGGGCCAAAATGTTTTTCTTCTTTTTTTAGAGTGTTTTAAGACTGTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACATGAGCAATTTGGAC</pcr_primer_p1>
		<pcr_primer_p2>TCACTGGCCAGAATGATTAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAACATGAGCAATTTGGACTCAAATTACACCTCGTCGAGATATAATAGATCTCAAGACACAAATAAAGGGGCGAAAGCTAGAGATCGGAGGGCTAAAAATTTCTTAAAACTTCATTTAAACAATTTGAAACCTTAAAATTTGAATTTCCCATCAAATTCTCGTCATTTTGAGCCCAAAATCGACTATTTTGGGTGATTTTGAAGGGAATTTCACTTTTGGCTCAGTTGGTAATCATTCTGGCCAGTGA</canonical_amplicon>
		<polymorphic_amplicon>AAAACATGAGCAATTTGGACTCAAATTACACCTCGTCGAGATATAATAGATCTCAAGACACAAATAAAGGGGCGAAAGCTAGAGATCGGAGGGCTAAAAATTTMTTAAAACTTCATTTAAACAATTTGAAACCTTAAAATTTGAATTTCCCATCAAATTCTCGTCATTTTGAGCCCAAAATCGACTATTTTGGGTGATTTTGAAGGGAATTTCACTTTTGGCTCAGTTGGTAATCATTCTGGCCAGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30955</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>20374</contig_pos>
        <strand></strand>
        <context>atttcccatc[A/T]aattctcgtc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAAAACTTCATTTAAACAATTTGAAACCTTAAAATTTGAATTTCCCATC</left_flank>
        <right_flank>AATTCTCGTCATTTTGAGCCCAAAATCGACTATTTTGGGTGATTTTGAAG</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTAAATTCAAATTTTGACATTTTTTCAGACAAAAACGTGTAGATTTTTCGAAAATCCATTTTTCAAAAATGCTCAAAATCCAAAAATGTGTGACTTTGCTCAAAACTTAAATTTTTGAAATTTTTAAACTTTTCATAACTCCCTGATCCTGAGTTTTTCCTAAATCTATGCCTCGGATGTCTGCGGTCATTTTATTAGTACTAAAATTTATAATAGACGACAAGAAGAGAGAGGCTTGTCTTATTATCTTTATATCCTTTTCCTCTTCTTGCTCTCCGATTGCTAATCCTTGGAAACTTGTCCGCTTTCGTTATTATTATTATTATGATCCATTCGGAAAAGGGAAAACATGAGCAATTTGGACTCAAATTACACCTCGTCGAGATATAATAGATCTCAAGACACAAATAAAGGGGCGAAAGCTAGAGATCGGAGGGCTAAAAATTTCTTAAAACTTCATTTAAACAATTTGAAACCTTAAAATTTGAATTTCCCATCAAATTCTCGTCATTTTGAGCCCAAAATCGACTATTTTGGGTGATTTTGAAGGGAATTTCACTTTTGGCTCAGTTGGTAATCATTCTGGCCAGTGAAAAAAATGTCCACGGGTTCGATTCCCTCTGGGGTCAAAACGTTTTTTTTCTTTTTTCAAGATTTTCTGGGATTTTAACTGACTCCGATTTTCAAAGTTTTCGAAATATTCCAAAAAAAATTTTCAAAATTTTCCGAAGTAGAATTTCAAGCTTTGCAACCTGAAATTTTGAATTTACTGTCAAATTCCCATCATTTTAAGCCCAACATTGTCTTCTTTAGACGATACTTAAAGGAAATTGCCTTTTTGGCGCAGCTGGTAAACGCTCTGGCCAGTGAAAAATAGTTCACGGGTTCGAACCCCGCCGGGGCCAAAATGTTTTTCTTCTTTTTTTAGAGTGTTTTAAGACTGTTTAAATGATTTTGGAGTTCGATTTTCAGAATTTTCGAAATTTTCAAAAAACATTA</canonical>
            <polymorphic>GCTAAATTCAAATTTTGACATTTTTTCAGACAAAAACGTGTAGATTTTTCGAAAATCCATTTTTCAAAAATGCTCAAAATCCAAAAATGTGTGACTTTGCTCAAAACTTAAATTTTTGAAATTTTTAAACTTTTCATAACTCCCTGATCCTGAGTTTTTCCTAAATCTATGCCTCGGATGTCTGCGGTCATTTTATTAGTACTAAAATTTATAATAGACGACAAGAAGAGAGAGGCTTGTCTTATTATCTTTATATCCTTTTCCTCTTCTTGCTCTCCGATTGCTAATCCTTGGAAACTTGTCCGCTTTCGTTATTATTATTATTATGATCCATTCGGAAAAGGGAAAACATGAGCAATTTGGACTCAAATTACACCTCGTCGAGATATAATAGATCTCAAGACACAAATAAAGGGGCGAAAGCTAGAGATCGGAGGGCTAAAAATTTCTTAAAACTTCATTTAAACAATTTGAAACCTTAAAATTTGAATTTCCCATCWAATTCTCGTCATTTTGAGCCCAAAATCGACTATTTTGGGTGATTTTGAAGGGAATTTCACTTTTGGCTCAGTTGGTAATCATTCTGGCCAGTGAAAAAAATGTCCACGGGTTCGATTCCCTCTGGGGTCAAAACGTTTTTTTTCTTTTTTCAAGATTTTCTGGGATTTTAACTGACTCCGATTTTCAAAGTTTTCGAAATATTCCAAAAAAAATTTTCAAAATTTTCCGAAGTAGAATTTCAAGCTTTGCAACCTGAAATTTTGAATTTACTGTCAAATTCCCATCATTTTAAGCCCAACATTGTCTTCTTTAGACGATACTTAAAGGAAATTGCCTTTTTGGCGCAGCTGGTAAACGCTCTGGCCAGTGAAAAATAGTTCACGGGTTCGAACCCCGCCGGGGCCAAAATGTTTTTCTTCTTTTTTTAGAGTGTTTTAAGACTGTTTAAATGATTTTGGAGTTCGATTTTCAGAATTTTCGAAATTTTCAAAAAACATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>238 197 159 100 86 52 39 22 18 15 12 12 9 9 9 7 6 6 4</canonical_bands>
                <polymorphic_bands>238 197 159 100 86 64 39 22 18 15 12 9 9 9 7 6 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACATGAGCAATTTGGAC</pcr_primer_p1>
		<pcr_primer_p2>TCACTGGCCAGAATGATTAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAACATGAGCAATTTGGACTCAAATTACACCTCGTCGAGATATAATAGATCTCAAGACACAAATAAAGGGGCGAAAGCTAGAGATCGGAGGGCTAAAAATTTCTTAAAACTTCATTTAAACAATTTGAAACCTTAAAATTTGAATTTCCCATCAAATTCTCGTCATTTTGAGCCCAAAATCGACTATTTTGGGTGATTTTGAAGGGAATTTCACTTTTGGCTCAGTTGGTAATCATTCTGGCCAGTGA</canonical_amplicon>
		<polymorphic_amplicon>AAAACATGAGCAATTTGGACTCAAATTACACCTCGTCGAGATATAATAGATCTCAAGACACAAATAAAGGGGCGAAAGCTAGAGATCGGAGGGCTAAAAATTTCTTAAAACTTCATTTAAACAATTTGAAACCTTAAAATTTGAATTTCCCATCWAATTCTCGTCATTTTGAGCCCAAAATCGACTATTTTGGGTGATTTTGAAGGGAATTTCACTTTTGGCTCAGTTGGTAATCATTCTGGCCAGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30956</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>23654</contig_pos>
        <strand></strand>
        <context>actcaattat[C/A]tgcatcgatt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AATCGTGTTTAGACTCATTTTAAAGCTCCTGACTTGCTGAACTCAATTAT</left_flank>
        <right_flank>TGCATCGATTCAAACAGAAATGTGTAAAGTTTCAGAAACATCACATCGGA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATGTTTTTCAAATTTCGCAAGCTATGAGCTTTGAAACAACCCTAAACACAACTAAAATCGGACCATTATTGAATTTTTGAGAATAAGAAAATCACAAAATTGTAAACTACTGTAGCTTGTCTGAAAGCTGATATTGCTGAAAAACTCATACAGTTTTGGATTTGTCTACTTGAGAGCTTCAAAATGAGCCTAAACACAAGTAGGCTCCGCCCACGTTGGGTTTCCCCGTTTGAACACGCGACGCACGACCGCGACGCACTCGAAAAATCAAAGTGGGCGTAGCCTAGGCGTGTTTGAGCTCATTTTGAAGCGCTGAACAAGACAAACACAATAATAAAAAATTCATCAGCCCAAACGCAAAACCTAGACTGCCAGGTGCAAAAGTTCGGCCATCAAAAGTTTGACCAATCCTTTTGACTGCAATATCCTCTGAAATGGGCGGAGCCTAATCGTGTTTAGACTCATTTTAAAGCTCCTGACTTGCTGAACTCAATTATCTGCATCGATTCAAACAGAAATGTGTAAAGTTTCAGAAACATCACATCGGAACAACTGCTCAAATCGAAATGGTGTGACTTGTACATCATTGCTCTGATGCAAACAGCCGACAAAATAAATTTGCCTCAACTTCTGGAGACTCTGACACAACAACTGGCTCTGGGACTAGAATGCGGTCAATTTTCCCCCGAGAAATTCGAGAAGTTCCGAGAGCAAATGAATCGGATAATGCAATTATCCCATTTGTTTGCTGCAAGAGATATGAGCTCAGTGGAGTACGCTTATCTTAAAATGATCTCGTTTACAACACAAGGTTAGCTTTCTGAACTGATATATTTGATTCAGGTTTGATATGAGCTTCAAAATGAGCCTAATCATGACTAGGTTTGGTGAAAATGAAATTTTCGGGCTTTTCGGGGCCTGGTGGCCTGAAAATAGATTTTTAGGCCTGACAATTTAGAAATCTAGGTTTGACAAGTTAAGAGCTTCAAAATGAGCCT</canonical>
            <polymorphic>TTATGTTTTTCAAATTTCGCAAGCTATGAGCTTTGAAACAACCCTAAACACAACTAAAATCGGACCATTATTGAATTTTTGAGAATAAGAAAATCACAAAATTGTAAACTACTGTAGCTTGTCTGAAAGCTGATATTGCTGAAAAACTCATACAGTTTTGGATTTGTCTACTTGAGAGCTTCAAAATGAGCCTAAACACAAGTAGGCTCCGCCCACGTTGGGTTTCCCCGTTTGAACACGCGACGCACGACCGCGACGCACTCGAAAAATCAAAGTGGGCGTAGCCTAGGCGTGTTTGAGCTCATTTTGAAGCGCTGAACAAGACAAACACAATAATAAAAAATTCATCAGCCCAAACGCAAAACCTAGACTGCCAGGTGCAAAAGTTCGGCCATCAAAAGTTTGACCAATCCTTTTGACTGCAATATCCTCTGAAATGGGCGGAGCCTAATCGTGTTTAGACTCATTTTAAAGCTCCTGACTTGCTGAACTCAATTATMTGCATCGATTCAAACAGAAATGTGTAAAGTTTCAGAAACATCACATCGGAACAACTGCTCAAATCGAAATGGTGTGACTTGTACATCATTGCTCTGATGCAAACAGCCGACAAAATAAATTTGCCTCAACTTCTGGAGACTCTGACACAACAACTGGCTCTGGGACTAGAATGCGGTCAATTTTCCCCCGAGAAATTCGAGAAGTTCCGAGAGCAAATGAATCGGATAATGCAATTATCCCATTTGTTTGCTGCAAGAGATATGAGCTCAGTGGAGTACGCTTATCTTAAAATGATCTCGTTTACAACACAAGGTTAGCTTTCTGAACTGATATATTTGATTCAGGTTTGATATGAGCTTCAAAATGAGCCTAATCATGACTAGGTTTGGTGAAAATGAAATTTTCGGGCTTTTCGGGGCCTGGTGGCCTGAAAATAGATTTTTAGGCCTGACAATTTAGAAATCTAGGTTTGACAAGTTAAGAGCTTCAAAATGAGCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTCTAGCAATCCAAATTC</pcr_primer_p1>
		<pcr_primer_p2>TGATGTACAAGTCACACCATTT</pcr_primer_p2>
		<pcr_amplicon_size>619</pcr_amplicon_size>
		<canonical_amplicon>TCTGCATCGATTCAAACAGAAATGTGTAAAGTTTCAGAAACATCACATCGGAACAACTGCTCAAATCGAAATGGTGTGACTTGTACATCA</canonical_amplicon>
		<polymorphic_amplicon>TMTGCATCGATTCAAACAGAAATGTGTAAAGTTTCAGAAACATCACATCGGAACAACTGCTCAAATCGAAATGGTGTGACTTGTACATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30957</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>77176</contig_pos>
        <strand></strand>
        <context>gtgccccaaa[A/T]mtcaaatgtg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGGCCAATGTTGAATTTCCAAGGGGTACCCCTCTGCGTGTGTGCCCCAAA</left_flank>
        <right_flank>CTCAAATGTGACCAAAATGGGTCAATATGGGGCTCAAAATGTCCCAAATT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATGTCAATATTGAGGTCAAATTTAGACTTAAAGATCGTATAAACGTAATTTTGAGTGCAAAACGCCTTCAAAATATTTGCCTTTCTTCCCTCCTCCTTCTTCTTCTATTTTCGTTCCTTCCGGTTCTTTTTTTGAGGCAGAACCTGTATAATTGAAATGATGTGATTGTATACACACATCCCCCCTTTCTTATCACTACAGTATACATTTGCATAGATAGTCCATAGGTACACGTGTAGGAAAACGGCAAGATGGACTACAAACTATAAGGTAGCTGCTCACAATGTCCCAAACTTCTTGAAAACCAAGATTTTTTGAGATTTAAAACATTTTCTAATTTCCAATGCACCCATAAATCGCCGAAACTTGAGTTTCACTATTTCTCATAGTTTTAATCAAATTCAGCACAATATTTGGAACATTTTGAGCTCCATATTGACCTATTTCGGCCAATGTTGAATTTCCAAGGGGTACCCCTCTGCGTGTGTGCCCCAAAACTCAAATGTGACCAAAATGGGTCAATATGGGGCTCAAAATGTCCCAAATTTCATAAAGAACACAAAATTGATAATGGTTTTTTTCCCAATTTTGAAATTTTCTGACTATTTATATCCTCTAGATTCGGACACAATGTTCCCAATTCAGATCACAAAACTTCAAAGACTACAAGAAACATTTTTAAAGGTACACACACCCACCTATTTGTCATCGTGTGTCCTTCGTGTCCCGTGGAAAGGGACACAGAACTTTGTGTGATTGTTATTCGAGCATGTGTATGTTTGTGTCCCTTTTGAATATTTCATCGTTCTCTGATTCTTGTTTGTAGAGAATTTCGTAAAAAGAGCAAAGAGCAGGAGGTAGGAGTCAGAAATTGATAAGGAATTTTGAATTCCCCCGATTTTTCGCCTCATTTTTCAATTTTCACAACTTTAGAATTTTCTTTAGAAAACCGCTAACAATAGTTCTAGTTTGAACAATTCCAATTTTTTTCGATTTT</canonical>
            <polymorphic>AAAATGTCAATATTGAGGTCAAATTTAGACTTAAAGATCGTATAAACGTAATTTTGAGTGCAAAACGCCTTCAAAATATTTGCCTTTCTTCCCTCCTCCTTCTTCTTCTATTTTCGTTCCTTCCGGTTCTTTTTTTGAGGCAGAACCTGTATAATTGAAATGATGTGATTGTATACACACATCCCCCCTTTCTTATCACTACAGTATACATTTGCATAGATAGTCCATAGGTACACGTGTAGGAAAACGGCAAGATGGACTACAAACTATAAGGTAGCTGCTCACAATGTCCCAAACTTCTTGAAAACCAAGATTTTTTGAGATTTAAAACATTTTCTAATTTCCAATGCACCCATAAATCGCCGAAACTTGAGTTTCACTATTTCTCATAGTTTTAATCAAATTCAGCACAATATTTGGAACATTTTGAGCTCCATATTGACCTATTTCGGCCAATGTTGAATTTCCAAGGGGTACCCCTCTGCGTGTGTGCCCCAAAWCTCAAATGTGACCAAAATGGGTCAATATGGGGCTCAAAATGTCCCAAATTTCATAAAGAACACAAAATTGATAATGGTTTTTTTCCCAATTTTGAAATTTTCTGACTATTTATATCCTCTAGATTCGGACACAATGTTCCCAATTCAGATCACAAAACTTCAAAGACTACAAGAAACATTTTTAAAGGTACACACACCCACCTATTTGTCATCGTGTGTCCTTCGTGTCCCGTGGAAAGGGACACAGAACTTTGTGTGATTGTTATTCGAGCATGTGTATGTTTGTGTCCCTTTTGAATATTTCATCGTTCTCTGATTCTTGTTTGTAGAGAATTTCGTAAAAAGAGCAAAGAGCAGGAGGTAGGAGTCAGAAATTGATAAGGAATTTTGAATTCCCCCGATTTTTCGCCTCATTTTTCAATTTTCACAACTTTAGAATTTTCTTTAGAAAACCGCTAACAATAGTTCTAGTTTGAACAATTCCAATTTTTTTCGATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCATAGTTTTAATCAAATTCA</pcr_primer_p1>
		<pcr_primer_p2>TGTCCGAATCTAGAGGATATAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCATAGTTTTAATCAAATTCAGCACAATATTTGGAACATTTTGAGCTCCATATTGACCTATTTCGGCCAATGTTGAATTTCCAAGGGGTACCCCTCTGCGTGTGTGCCCCAAAACTCAAATGTGACCAAAATGGGTCAATATGGGGCTCAAAATGTCCCAAATTTCATAAAGAACACAAAATTGATAATGGTTTTTTTCCCAATTTTGAAATTTTCTGACTATTTATATCCTCTAGATTCGGACA</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCATAGTTTTAATCAAATTCAGCACAATATTTGGAACATTTTGAGCTCCATATTGACCTATTTCGGCCAATGTTGAATTTCCAAGGGGTACCCCTCTGCGTGTGTGCCCCAAAWCTCAAATGTGACCAAAATGGGTCAATATGGGGCTCAAAATGTCCCAAATTTCATAAAGAACACAAAATTGATAATGGTTTTTTTCCCAATTTTGAAATTTTCTGACTATTTATATCCTCTAGATTCGGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30958</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>77177</contig_pos>
        <strand></strand>
        <context>tgccccaaaw[C/A]tcaaatgtga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GGCCAATGTTGAATTTCCAAGGGGTACCCCTCTGCGTGTGTGCCCCAAAA</left_flank>
        <right_flank>TCAAATGTGACCAAAATGGGTCAATATGGGGCTCAAAATGTCCCAAATTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGTCAATATTGAGGTCAAATTTAGACTTAAAGATCGTATAAACGTAATTTTGAGTGCAAAACGCCTTCAAAATATTTGCCTTTCTTCCCTCCTCCTTCTTCTTCTATTTTCGTTCCTTCCGGTTCTTTTTTTGAGGCAGAACCTGTATAATTGAAATGATGTGATTGTATACACACATCCCCCCTTTCTTATCACTACAGTATACATTTGCATAGATAGTCCATAGGTACACGTGTAGGAAAACGGCAAGATGGACTACAAACTATAAGGTAGCTGCTCACAATGTCCCAAACTTCTTGAAAACCAAGATTTTTTGAGATTTAAAACATTTTCTAATTTCCAATGCACCCATAAATCGCCGAAACTTGAGTTTCACTATTTCTCATAGTTTTAATCAAATTCAGCACAATATTTGGAACATTTTGAGCTCCATATTGACCTATTTCGGCCAATGTTGAATTTCCAAGGGGTACCCCTCTGCGTGTGTGCCCCAAAACTCAAATGTGACCAAAATGGGTCAATATGGGGCTCAAAATGTCCCAAATTTCATAAAGAACACAAAATTGATAATGGTTTTTTTCCCAATTTTGAAATTTTCTGACTATTTATATCCTCTAGATTCGGACACAATGTTCCCAATTCAGATCACAAAACTTCAAAGACTACAAGAAACATTTTTAAAGGTACACACACCCACCTATTTGTCATCGTGTGTCCTTCGTGTCCCGTGGAAAGGGACACAGAACTTTGTGTGATTGTTATTCGAGCATGTGTATGTTTGTGTCCCTTTTGAATATTTCATCGTTCTCTGATTCTTGTTTGTAGAGAATTTCGTAAAAAGAGCAAAGAGCAGGAGGTAGGAGTCAGAAATTGATAAGGAATTTTGAATTCCCCCGATTTTTCGCCTCATTTTTCAATTTTCACAACTTTAGAATTTTCTTTAGAAAACCGCTAACAATAGTTCTAGTTTGAACAATTCCAATTTTTTTCGATTTTC</canonical>
            <polymorphic>AAATGTCAATATTGAGGTCAAATTTAGACTTAAAGATCGTATAAACGTAATTTTGAGTGCAAAACGCCTTCAAAATATTTGCCTTTCTTCCCTCCTCCTTCTTCTTCTATTTTCGTTCCTTCCGGTTCTTTTTTTGAGGCAGAACCTGTATAATTGAAATGATGTGATTGTATACACACATCCCCCCTTTCTTATCACTACAGTATACATTTGCATAGATAGTCCATAGGTACACGTGTAGGAAAACGGCAAGATGGACTACAAACTATAAGGTAGCTGCTCACAATGTCCCAAACTTCTTGAAAACCAAGATTTTTTGAGATTTAAAACATTTTCTAATTTCCAATGCACCCATAAATCGCCGAAACTTGAGTTTCACTATTTCTCATAGTTTTAATCAAATTCAGCACAATATTTGGAACATTTTGAGCTCCATATTGACCTATTTCGGCCAATGTTGAATTTCCAAGGGGTACCCCTCTGCGTGTGTGCCCCAAAAMTCAAATGTGACCAAAATGGGTCAATATGGGGCTCAAAATGTCCCAAATTTCATAAAGAACACAAAATTGATAATGGTTTTTTTCCCAATTTTGAAATTTTCTGACTATTTATATCCTCTAGATTCGGACACAATGTTCCCAATTCAGATCACAAAACTTCAAAGACTACAAGAAACATTTTTAAAGGTACACACACCCACCTATTTGTCATCGTGTGTCCTTCGTGTCCCGTGGAAAGGGACACAGAACTTTGTGTGATTGTTATTCGAGCATGTGTATGTTTGTGTCCCTTTTGAATATTTCATCGTTCTCTGATTCTTGTTTGTAGAGAATTTCGTAAAAAGAGCAAAGAGCAGGAGGTAGGAGTCAGAAATTGATAAGGAATTTTGAATTCCCCCGATTTTTCGCCTCATTTTTCAATTTTCACAACTTTAGAATTTTCTTTAGAAAACCGCTAACAATAGTTCTAGTTTGAACAATTCCAATTTTTTTCGATTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCATAGTTTTAATCAAATTCA</pcr_primer_p1>
		<pcr_primer_p2>TGTCCGAATCTAGAGGATATAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCATAGTTTTAATCAAATTCAGCACAATATTTGGAACATTTTGAGCTCCATATTGACCTATTTCGGCCAATGTTGAATTTCCAAGGGGTACCCCTCTGCGTGTGTGCCCCAAAACTCAAATGTGACCAAAATGGGTCAATATGGGGCTCAAAATGTCCCAAATTTCATAAAGAACACAAAATTGATAATGGTTTTTTTCCCAATTTTGAAATTTTCTGACTATTTATATCCTCTAGATTCGGACA</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCATAGTTTTAATCAAATTCAGCACAATATTTGGAACATTTTGAGCTCCATATTGACCTATTTCGGCCAATGTTGAATTTCCAAGGGGTACCCCTCTGCGTGTGTGCCCCAAAAMTCAAATGTGACCAAAATGGGTCAATATGGGGCTCAAAATGTCCCAAATTTCATAAAGAACACAAAATTGATAATGGTTTTTTTCCCAATTTTGAAATTTTCTGACTATTTATATCCTCTAGATTCGGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30959</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>77200</contig_pos>
        <strand></strand>
        <context>aaaatgggtc[A/G]atatggggct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTACCCCTCTGCGTGTGTGCCCCAAAACTCAAATGTGACCAAAATGGGTC</left_flank>
        <right_flank>ATATGGGGCTCAAAATGTCCCAAATTTCATAAAGAACACAAAATTGATAA</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGACTTAAAGATCGTATAAACGTAATTTTGAGTGCAAAACGCCTTCAAAATATTTGCCTTTCTTCCCTCCTCCTTCTTCTTCTATTTTCGTTCCTTCCGGTTCTTTTTTTGAGGCAGAACCTGTATAATTGAAATGATGTGATTGTATACACACATCCCCCCTTTCTTATCACTACAGTATACATTTGCATAGATAGTCCATAGGTACACGTGTAGGAAAACGGCAAGATGGACTACAAACTATAAGGTAGCTGCTCACAATGTCCCAAACTTCTTGAAAACCAAGATTTTTTGAGATTTAAAACATTTTCTAATTTCCAATGCACCCATAAATCGCCGAAACTTGAGTTTCACTATTTCTCATAGTTTTAATCAAATTCAGCACAATATTTGGAACATTTTGAGCTCCATATTGACCTATTTCGGCCAATGTTGAATTTCCAAGGGGTACCCCTCTGCGTGTGTGCCCCAAAACTCAAATGTGACCAAAATGGGTCAATATGGGGCTCAAAATGTCCCAAATTTCATAAAGAACACAAAATTGATAATGGTTTTTTTCCCAATTTTGAAATTTTCTGACTATTTATATCCTCTAGATTCGGACACAATGTTCCCAATTCAGATCACAAAACTTCAAAGACTACAAGAAACATTTTTAAAGGTACACACACCCACCTATTTGTCATCGTGTGTCCTTCGTGTCCCGTGGAAAGGGACACAGAACTTTGTGTGATTGTTATTCGAGCATGTGTATGTTTGTGTCCCTTTTGAATATTTCATCGTTCTCTGATTCTTGTTTGTAGAGAATTTCGTAAAAAGAGCAAAGAGCAGGAGGTAGGAGTCAGAAATTGATAAGGAATTTTGAATTCCCCCGATTTTTCGCCTCATTTTTCAATTTTCACAACTTTAGAATTTTCTTTAGAAAACCGCTAACAATAGTTCTAGTTTGAACAATTCCAATTTTTTTCGATTTTCAAAACAATTTGAAAACTTTGAAT</canonical>
            <polymorphic>TTAGACTTAAAGATCGTATAAACGTAATTTTGAGTGCAAAACGCCTTCAAAATATTTGCCTTTCTTCCCTCCTCCTTCTTCTTCTATTTTCGTTCCTTCCGGTTCTTTTTTTGAGGCAGAACCTGTATAATTGAAATGATGTGATTGTATACACACATCCCCCCTTTCTTATCACTACAGTATACATTTGCATAGATAGTCCATAGGTACACGTGTAGGAAAACGGCAAGATGGACTACAAACTATAAGGTAGCTGCTCACAATGTCCCAAACTTCTTGAAAACCAAGATTTTTTGAGATTTAAAACATTTTCTAATTTCCAATGCACCCATAAATCGCCGAAACTTGAGTTTCACTATTTCTCATAGTTTTAATCAAATTCAGCACAATATTTGGAACATTTTGAGCTCCATATTGACCTATTTCGGCCAATGTTGAATTTCCAAGGGGTACCCCTCTGCGTGTGTGCCCCAAAACTCAAATGTGACCAAAATGGGTCRATATGGGGCTCAAAATGTCCCAAATTTCATAAAGAACACAAAATTGATAATGGTTTTTTTCCCAATTTTGAAATTTTCTGACTATTTATATCCTCTAGATTCGGACACAATGTTCCCAATTCAGATCACAAAACTTCAAAGACTACAAGAAACATTTTTAAAGGTACACACACCCACCTATTTGTCATCGTGTGTCCTTCGTGTCCCGTGGAAAGGGACACAGAACTTTGTGTGATTGTTATTCGAGCATGTGTATGTTTGTGTCCCTTTTGAATATTTCATCGTTCTCTGATTCTTGTTTGTAGAGAATTTCGTAAAAAGAGCAAAGAGCAGGAGGTAGGAGTCAGAAATTGATAAGGAATTTTGAATTCCCCCGATTTTTCGCCTCATTTTTCAATTTTCACAACTTTAGAATTTTCTTTAGAAAACCGCTAACAATAGTTCTAGTTTGAACAATTCCAATTTTTTTCGATTTTCAAAACAATTTGAAAACTTTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCATAGTTTTAATCAAATTCA</pcr_primer_p1>
		<pcr_primer_p2>TGTCCGAATCTAGAGGATATAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCATAGTTTTAATCAAATTCAGCACAATATTTGGAACATTTTGAGCTCCATATTGACCTATTTCGGCCAATGTTGAATTTCCAAGGGGTACCCCTCTGCGTGTGTGCCCCAAAACTCAAATGTGACCAAAATGGGTCAATATGGGGCTCAAAATGTCCCAAATTTCATAAAGAACACAAAATTGATAATGGTTTTTTTCCCAATTTTGAAATTTTCTGACTATTTATATCCTCTAGATTCGGACA</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCATAGTTTTAATCAAATTCAGCACAATATTTGGAACATTTTGAGCTCCATATTGACCTATTTCGGCCAATGTTGAATTTCCAAGGGGTACCCCTCTGCGTGTGTGCCCCAAAACTCAAATGTGACCAAAATGGGTCRATATGGGGCTCAAAATGTCCCAAATTTCATAAAGAACACAAAATTGATAATGGTTTTTTTCCCAATTTTGAAATTTTCTGACTATTTATATCCTCTAGATTCGGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30960</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>102700</contig_pos>
        <strand>+</strand>
        <context>GCTCCAGAAG[C/T]TTCAAGAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCCGACGACGCGTGGGCGGAGCTTCTCCGTAAGAACGGCGCTCCAGAAG</left_flank>
        <right_flank>TTCAAGAGAAGCTGTGGCAGCCATGCTTTTGGGTAGAAACAAACGTAACG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACACTCATCTCATCATTAGCTTTAAAATGTGCCCCCACACAACTAGGCTCCGCCCAATTTGAAATTTCCCCTGGACACGCGACGCACGACCGCGACGCGGCTGAAAAATCAAAGTGGACGGAGCCTAGTCGTGTTTGGGATTATTTTGAAGCTGAGAACGTGCTACATTTGAAGCTGAATATGCCAGCACGATAAGAGACATGGATTTTTTGAAAAATGGACTTTTTAGTTTAAAGTTCCGCATTTTTCTTCTAAATCTAAAGTTTGCCACCGAACCAAAAAATTCAAAATTTCGAAATTCTTGCAGATGGGCGCGTTCGGCACGTTGGCGTGCGCTTCGGCGACAATTCTAACCATCGGATCCCTGGCAACCATGTGCTTGATCGTTTCCGACATCAACGGTCTCTACAATGACGTCATGGAAGAGTCCAGAACCACTCGTACTGTAGCCGACGACGCGTGGGCGGAGCTTCTCCGTAAGAACGGCGCTCCAGAAGCTTCAAGAGAAGCTGTGGCAGCCATGCTTTTGGGTAGAAACAAACGTAACGCTCAGTGTAACTGTGGAGCCAAGAGCCATGGATGCCCAGCCGGACCACCAGGACCACGTGGACCAAACGGACAGCCAGGACAGGATGGACCAGACGGTCTGGATGGAGCCAATGGAGCACCAGGATACGCTGGAGCCATCAAGGAGGAATTCGGTGGGGCATGCATTTCTTGCCCAGCCGGACCACCAGGACCACCAGGACCAGATGGATGCGCTGGGGAGCCGGGACAAGATGGAGAGCCTGGGCATGATGGAAAGAATGGATCACCAGGGGCTCCAGGAGGACCCGGACCAAAGGGACCAGCTGGGCATCCAGGAAAGGCCGGAAGAGGGGGACCAAGAGGACCAGCTGGAGCCAAAGGACAGACCTATCTGCCAGGAGCCGCGGGACATCCAGGAAACAGTGGAAGACGAGGACCACCGGGACCAGCTGGACCAAATGGAAAGAATG</canonical>
            <polymorphic>TCACACTCATCTCATCATTAGCTTTAAAATGTGCCCCCACACAACTAGGCTCCGCCCAATTTGAAATTTCCCCTGGACACGCGACGCACGACCGCGACGCGGCTGAAAAATCAAAGTGGACGGAGCCTAGTCGTGTTTGGGATTATTTTGAAGCTGAGAACGTGCTACATTTGAAGCTGAATATGCCAGCACGATAAGAGACATGGATTTTTTGAAAAATGGACTTTTTAGTTTAAAGTTCCGCATTTTTCTTCTAAATCTAAAGTTTGCCACCGAACCAAAAAATTCAAAATTTCGAAATTCTTGCAGATGGGCGCGTTCGGCACGTTGGCGTGCGCTTCGGCGACAATTCTAACCATCGGATCCCTGGCAACCATGTGCTTGATCGTTTCCGACATCAACGGTCTCTACAATGACGTCATGGAAGAGTCCAGAACCACTCGTACTGTAGCCGACGACGCGTGGGCGGAGCTTCTCCGTAAGAACGGCGCTCCAGAAGYTTCAAGAGAAGCTGTGGCAGCCATGCTTTTGGGTAGAAACAAACGTAACGCTCAGTGTAACTGTGGAGCCAAGAGCCATGGATGCCCAGCCGGACCACCAGGACCACGTGGACCAAACGGACAGCCAGGACAGGATGGACCAGACGGTCTGGATGGAGCCAATGGAGCACCAGGATACGCTGGAGCCATCAAGGAGGAATTCGGTGGGGCATGCATTTCTTGCCCAGCCGGACCACCAGGACCACCAGGACCAGATGGATGCGCTGGGGAGCCGGGACAAGATGGAGAGCCTGGGCATGATGGAAAGAATGGATCACCAGGGGCTCCAGGAGGACCCGGACCAAAGGGACCAGCTGGGCATCCAGGAAAGGCCGGAAGAGGGGGACCAAGAGGACCAGCTGGAGCCAAAGGACAGACCTATCTGCCAGGAGCCGCGGGACATCCAGGAAACAGTGGAAGACGAGGACCACCGGGACCAGCTGGACCAAATGGAAAGAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>342 295 132 81 45 28 23 21 21 12</canonical_bands>
                <polymorphic_bands>342 295 132 81 45 40 23 21 21</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>281 182 138 137 83 64 55 39 21</canonical_bands>
                <polymorphic_bands>281 182 138 137 83 64 60 55</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>275 53 48 48 44 42 35 34 34 30 28 28 28 27 27 27 23 23 21 21 20 18 18 14 12 9 7 6</canonical_bands>
                <polymorphic_bands>275 53 48 48 44 42 40 35 34 34 30 28 28 27 27 27 23 23 21 21 20 18 18 14 9 7 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATCAACGGTCTCTACAATG</pcr_primer_p1>
		<pcr_primer_p2>TCTTGGCTCCACAGTTACAC</pcr_primer_p2>
		<pcr_amplicon_size>180</pcr_amplicon_size>
		<canonical_amplicon>ACATCAACGGTCTCTACAATGACGTCATGGAAGAGTCCAGAACCACTCGTACTGTAGCCGACGACGCGTGGGCGGAGCTTCTCCGTAAGAACGGCGCTCCAGAAGCTTCAAGAGAAGCTGTGGCAGCCATGCTTTTGGGTAGAAACAAACGTAACGCTCAGTGTAACTGTGGAGCCAAGA</canonical_amplicon>
		<polymorphic_amplicon>ACATCAACGGTCTCTACAATGACGTCATGGAAGAGTCCAGAACCACTCGTACTGTAGCCGACGACGCGTGGGCGGAGCTTCTCCGTAAGAACGGCGCTCCAGAAGYTTCAAGAGAAGCTGTGGCAGCCATGCTTTTGGGTAGAAACAAACGTAACGCTCAGTGTAACTGTGGAGCCAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30961</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>116242</contig_pos>
        <strand>+</strand>
        <context>ACTTTGATTT[G/T]AATATCAATC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTTTGAATAGTAATAACTTCGCTAGTTTTTAAGCTAGCACTTTGATTT</left_flank>
        <right_flank>AATATCAATCGAAAGAGCATAAAATTTGACAAAAAATACAATGTGTTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATTGTGTTTCGAGAAATCAGAAATTCCTACATTCACGCTTCAAGAAATTCGCAAGGCATCACTTTTATAGATCACAAGAATTTGCAAAGAAAATTTTTTTTGAAACTTTGGTGCCAAAAATTTTTTAAAGCTTGTAGCTCAGCTAGTTTTTAAGCTAGCATTTTGATTTTCATACAAATCGAAAGAGCAAAAAATTTTACGTATAGTCGAATTGTTTCATAAGTTTTGTGTTGCTACTAGCTGAGCTACGTGGTTATAAGTGCTGTTGACACCATTCCTACCGTACCTCAACCGCGCAGCTCAGCTAGTAGGAGATATTTTAAACAAAAAAATTTATACTTAGAATTTTATGTTCTTTCGATTGGTATAAAAATCAAAAAGCTAGCTTAAAAACTAGCTGAGTTATGACTATTCAAAAAAAACTTCTTTAAAATATCCGCCAGAAATTTTTGAATAGTAATAACTTCGCTAGTTTTTAAGCTAGCACTTTGATTTGAATATCAATCGAAAGAGCATAAAATTTGACAAAAAATACAATGTGTTCAAAAAATCCAGTGTCTCTACCAACTGAGCTACACGGGTGTAAGTTCTGTTGACACCCTTCCTACCGTACCCCAGCACTTACAACCGGTCTGCGTAAAATTTTATGTTCTTTCGTATGGTAAAATAATAATCATAAAACTAACTTTAAAACTAGCTAAGTTATAAGAGTTTAAAAAATTTTCTTGAAAATTTGGCGCCAAAAATTTTTGAACAGTCATAGCTCAGCTAGTTTTCAAGTCAGCTTTTTGATTTGTAAACCAATCGAAAGAGTAAAAAATTTTAAATAAAATAAAATTTGTTTAAAAAATCCCATTTCGCTACTAGCTGAACTACGACTACAGTAGGCAGGGGTACTGAACTCTATACTCTACTTTACTCATCTTCTCTTCTATTTTTCTGTCATGTTTGATATTTTACGAAGCAATACGTCAAAAAAAGGGGGATGTGTAGGAG</canonical>
            <polymorphic>AAAAATTGTGTTTCGAGAAATCAGAAATTCCTACATTCACGCTTCAAGAAATTCGCAAGGCATCACTTTTATAGATCACAAGAATTTGCAAAGAAAATTTTTTTTGAAACTTTGGTGCCAAAAATTTTTTAAAGCTTGTAGCTCAGCTAGTTTTTAAGCTAGCATTTTGATTTTCATACAAATCGAAAGAGCAAAAAATTTTACGTATAGTCGAATTGTTTCATAAGTTTTGTGTTGCTACTAGCTGAGCTACGTGGTTATAAGTGCTGTTGACACCATTCCTACCGTACCTCAACCGCGCAGCTCAGCTAGTAGGAGATATTTTAAACAAAAAAATTTATACTTAGAATTTTATGTTCTTTCGATTGGTATAAAAATCAAAAAGCTAGCTTAAAAACTAGCTGAGTTATGACTATTCAAAAAAAACTTCTTTAAAATATCCGCCAGAAATTTTTGAATAGTAATAACTTCGCTAGTTTTTAAGCTAGCACTTTGATTTKAATATCAATCGAAAGAGCATAAAATTTGACAAAAAATACAATGTGTTCAAAAAATCCAGTGTCTCTACCAACTGAGCTACACGGGTGTAAGTTCTGTTGACACCCTTCCTACCGTACCCCAGCACTTACAACCGGTCTGCGTAAAATTTTATGTTCTTTCGTATGGTAAAATAATAATCATAAAACTAACTTTAAAACTAGCTAAGTTATAAGAGTTTAAAAAATTTTCTTGAAAATTTGGCGCCAAAAATTTTTGAACAGTCATAGCTCAGCTAGTTTTCAAGTCAGCTTTTTGATTTGTAAACCAATCGAAAGAGTAAAAAATTTTAAATAAAATAAAATTTGTTTAAAAAATCCCATTTCGCTACTAGCTGAACTACGACTACAGTAGGCAGGGGTACTGAACTCTATACTCTACTTTACTCATCTTCTCTTCTATTTTTCTGTCATGTTTGATATTTTACGAAGCAATACGTCAAAAAAAGGGGGATGTGTAGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGATTGGTATAAAAATCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAGGGTGTCAACAGAACTTAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCGATTGGTATAAAAATCAAAAAGCTAGCTTAAAAACTAGCTGAGTTATGACTATTCAAAAAAAACTTCTTTAAAATATCCGCCAGAAATTTTTGAATAGTAATAACTTCGCTAGTTTTTAAGCTAGCACTTTGATTTGAATATCAATCGAAAGAGCATAAAATTTGACAAAAAATACAATGTGTTCAAAAAATCCAGTGTCTCTACCAACTGAGCTACACGGGTGTAAGTTCTGTTGACACCCTTC</canonical_amplicon>
		<polymorphic_amplicon>TCGATTGGTATAAAAATCAAAAAGCTAGCTTAAAAACTAGCTGAGTTATGACTATTCAAAAAAAACTTCTTTAAAATATCCGCCAGAAATTTTTGAATAGTAATAACTTCGCTAGTTTTTAAGCTAGCACTTTGATTTKAATATCAATCGAAAGAGCATAAAATTTGACAAAAAATACAATGTGTTCAAAAAATCCAGTGTCTCTACCAACTGAGCTACACGGGTGTAAGTTCTGTTGACACCCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30962</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>116327</contig_pos>
        <strand>+</strand>
        <context>AGCTACACGG[A/G]TGTAAGTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATACAATGTGTTCAAAAAATCCAGTGTCTCTACCAACTGAGCTACACGG</left_flank>
        <right_flank>TGTAAGTTCTGTTGACACCCTTCCTACCGTACCCCAGCACTTACAACCGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCAAAGAAAATTTTTTTTGAAACTTTGGTGCCAAAAATTTTTTAAAGCTTGTAGCTCAGCTAGTTTTTAAGCTAGCATTTTGATTTTCATACAAATCGAAAGAGCAAAAAATTTTACGTATAGTCGAATTGTTTCATAAGTTTTGTGTTGCTACTAGCTGAGCTACGTGGTTATAAGTGCTGTTGACACCATTCCTACCGTACCTCAACCGCGCAGCTCAGCTAGTAGGAGATATTTTAAACAAAAAAATTTATACTTAGAATTTTATGTTCTTTCGATTGGTATAAAAATCAAAAAGCTAGCTTAAAAACTAGCTGAGTTATGACTATTCAAAAAAAACTTCTTTAAAATATCCGCCAGAAATTTTTGAATAGTAATAACTTCGCTAGTTTTTAAGCTAGCACTTTGATTTGAATATCAATCGAAAGAGCATAAAATTTGACAAAAAATACAATGTGTTCAAAAAATCCAGTGTCTCTACCAACTGAGCTACACGGGTGTAAGTTCTGTTGACACCCTTCCTACCGTACCCCAGCACTTACAACCGGTCTGCGTAAAATTTTATGTTCTTTCGTATGGTAAAATAATAATCATAAAACTAACTTTAAAACTAGCTAAGTTATAAGAGTTTAAAAAATTTTCTTGAAAATTTGGCGCCAAAAATTTTTGAACAGTCATAGCTCAGCTAGTTTTCAAGTCAGCTTTTTGATTTGTAAACCAATCGAAAGAGTAAAAAATTTTAAATAAAATAAAATTTGTTTAAAAAATCCCATTTCGCTACTAGCTGAACTACGACTACAGTAGGCAGGGGTACTGAACTCTATACTCTACTTTACTCATCTTCTCTTCTATTTTTCTGTCATGTTTGATATTTTACGAAGCAATACGTCAAAAAAAGGGGGATGTGTAGGAGGAGGGAAAAAAGAAGATATGTTCTTTTCAGAAGACGTCGACGTCTTCTGAATCGGAGACACTCTATGCCTTTAGGGCACAGAAAT</canonical>
            <polymorphic>TTGCAAAGAAAATTTTTTTTGAAACTTTGGTGCCAAAAATTTTTTAAAGCTTGTAGCTCAGCTAGTTTTTAAGCTAGCATTTTGATTTTCATACAAATCGAAAGAGCAAAAAATTTTACGTATAGTCGAATTGTTTCATAAGTTTTGTGTTGCTACTAGCTGAGCTACGTGGTTATAAGTGCTGTTGACACCATTCCTACCGTACCTCAACCGCGCAGCTCAGCTAGTAGGAGATATTTTAAACAAAAAAATTTATACTTAGAATTTTATGTTCTTTCGATTGGTATAAAAATCAAAAAGCTAGCTTAAAAACTAGCTGAGTTATGACTATTCAAAAAAAACTTCTTTAAAATATCCGCCAGAAATTTTTGAATAGTAATAACTTCGCTAGTTTTTAAGCTAGCACTTTGATTTGAATATCAATCGAAAGAGCATAAAATTTGACAAAAAATACAATGTGTTCAAAAAATCCAGTGTCTCTACCAACTGAGCTACACGGRTGTAAGTTCTGTTGACACCCTTCCTACCGTACCCCAGCACTTACAACCGGTCTGCGTAAAATTTTATGTTCTTTCGTATGGTAAAATAATAATCATAAAACTAACTTTAAAACTAGCTAAGTTATAAGAGTTTAAAAAATTTTCTTGAAAATTTGGCGCCAAAAATTTTTGAACAGTCATAGCTCAGCTAGTTTTCAAGTCAGCTTTTTGATTTGTAAACCAATCGAAAGAGTAAAAAATTTTAAATAAAATAAAATTTGTTTAAAAAATCCCATTTCGCTACTAGCTGAACTACGACTACAGTAGGCAGGGGTACTGAACTCTATACTCTACTTTACTCATCTTCTCTTCTATTTTTCTGTCATGTTTGATATTTTACGAAGCAATACGTCAAAAAAAGGGGGATGTGTAGGAGGAGGGAAAAAAGAAGATATGTTCTTTTCAGAAGACGTCGACGTCTTCTGAATCGGAGACACTCTATGCCTTTAGGGCACAGAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>370 215 117 66 55 32 22 22 20 18 16 15 10 9 7 6</canonical_bands>
                <polymorphic_bands>370 215 117 66 55 32 22 22 21 20 18 16 10 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAGCATAAAATTTGACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTGAGCTATGACTGTTCAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>AAGAGCATAAAATTTGACAAAAAATACAATGTGTTCAAAAAATCCAGTGTCTCTACCAACTGAGCTACACGGGTGTAAGTTCTGTTGACACCCTTCCTACCGTACCCCAGCACTTACAACCGGTCTGCGTAAAATTTTATGTTCTTTCGTATGGTAAAATAATAATCATAAAACTAACTTTAAAACTAGCTAAGTTATAAGAGTTTAAAAAATTTTCTTGAAAATTTGGCGCCAAAAATTTTTGAACAGTCATAGCTCAG</canonical_amplicon>
		<polymorphic_amplicon>AAGAGCATAAAATTTGACAAAAAATACAATGTGTTCAAAAAATCCAGTGTCTCTACCAACTGAGCTACACGGRTGTAAGTTCTGTTGACACCCTTCCTACCGTACCCCAGCACTTACAACCGGTCTGCGTAAAATTTTATGTTCTTTCGTATGGTAAAATAATAATCATAAAACTAACTTTAAAACTAGCTAAGTTATAAGAGTTTAAAAAATTTTCTTGAAAATTTGGCGCCAAAAATTTTTGAACAGTCATAGCTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30963</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>116423</contig_pos>
        <strand>+</strand>
        <context>ATAATAATCA[A/T]AAAACTAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCGGTCTGCGTAAAATTTTATGTTCTTTCGTATGGTAAAATAATAATCA</left_flank>
        <right_flank>AAAACTAACTTTAAAACTAGCTAAGTTATAAGAGTTTAAAAAATTTTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGAAAGAGCAAAAAATTTTACGTATAGTCGAATTGTTTCATAAGTTTTGTGTTGCTACTAGCTGAGCTACGTGGTTATAAGTGCTGTTGACACCATTCCTACCGTACCTCAACCGCGCAGCTCAGCTAGTAGGAGATATTTTAAACAAAAAAATTTATACTTAGAATTTTATGTTCTTTCGATTGGTATAAAAATCAAAAAGCTAGCTTAAAAACTAGCTGAGTTATGACTATTCAAAAAAAACTTCTTTAAAATATCCGCCAGAAATTTTTGAATAGTAATAACTTCGCTAGTTTTTAAGCTAGCACTTTGATTTGAATATCAATCGAAAGAGCATAAAATTTGACAAAAAATACAATGTGTTCAAAAAATCCAGTGTCTCTACCAACTGAGCTACACGGGTGTAAGTTCTGTTGACACCCTTCCTACCGTACCCCAGCACTTACAACCGGTCTGCGTAAAATTTTATGTTCTTTCGTATGGTAAAATAATAATCATAAAACTAACTTTAAAACTAGCTAAGTTATAAGAGTTTAAAAAATTTTCTTGAAAATTTGGCGCCAAAAATTTTTGAACAGTCATAGCTCAGCTAGTTTTCAAGTCAGCTTTTTGATTTGTAAACCAATCGAAAGAGTAAAAAATTTTAAATAAAATAAAATTTGTTTAAAAAATCCCATTTCGCTACTAGCTGAACTACGACTACAGTAGGCAGGGGTACTGAACTCTATACTCTACTTTACTCATCTTCTCTTCTATTTTTCTGTCATGTTTGATATTTTACGAAGCAATACGTCAAAAAAAGGGGGATGTGTAGGAGGAGGGAAAAAAGAAGATATGTTCTTTTCAGAAGACGTCGACGTCTTCTGAATCGGAGACACTCTATGCCTTTAGGGCACAGAAATGAAGTTTGCTTCTAGTTGAATAGGTATAAGGGACAGAGATCAGAAATGTTTGATTTGGAAAACTTTTTTAAATTGGGTCCGAAGATTTTTATGATT</canonical>
            <polymorphic>ATCGAAAGAGCAAAAAATTTTACGTATAGTCGAATTGTTTCATAAGTTTTGTGTTGCTACTAGCTGAGCTACGTGGTTATAAGTGCTGTTGACACCATTCCTACCGTACCTCAACCGCGCAGCTCAGCTAGTAGGAGATATTTTAAACAAAAAAATTTATACTTAGAATTTTATGTTCTTTCGATTGGTATAAAAATCAAAAAGCTAGCTTAAAAACTAGCTGAGTTATGACTATTCAAAAAAAACTTCTTTAAAATATCCGCCAGAAATTTTTGAATAGTAATAACTTCGCTAGTTTTTAAGCTAGCACTTTGATTTGAATATCAATCGAAAGAGCATAAAATTTGACAAAAAATACAATGTGTTCAAAAAATCCAGTGTCTCTACCAACTGAGCTACACGGGTGTAAGTTCTGTTGACACCCTTCCTACCGTACCCCAGCACTTACAACCGGTCTGCGTAAAATTTTATGTTCTTTCGTATGGTAAAATAATAATCAWAAAACTAACTTTAAAACTAGCTAAGTTATAAGAGTTTAAAAAATTTTCTTGAAAATTTGGCGCCAAAAATTTTTGAACAGTCATAGCTCAGCTAGTTTTCAAGTCAGCTTTTTGATTTGTAAACCAATCGAAAGAGTAAAAAATTTTAAATAAAATAAAATTTGTTTAAAAAATCCCATTTCGCTACTAGCTGAACTACGACTACAGTAGGCAGGGGTACTGAACTCTATACTCTACTTTACTCATCTTCTCTTCTATTTTTCTGTCATGTTTGATATTTTACGAAGCAATACGTCAAAAAAAGGGGGATGTGTAGGAGGAGGGAAAAAAGAAGATATGTTCTTTTCAGAAGACGTCGACGTCTTCTGAATCGGAGACACTCTATGCCTTTAGGGCACAGAAATGAAGTTTGCTTCTAGTTGAATAGGTATAAGGGACAGAGATCAGAAATGTTTGATTTGGAAAACTTTTTTAAATTGGGTCCGAAGATTTTTATGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGTCTCTACCAACTGAGCTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTACAAATCAAAAAGCTGACTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGTGTCTCTACCAACTGAGCTACACGGGTGTAAGTTCTGTTGACACCCTTCCTACCGTACCCCAGCACTTACAACCGGTCTGCGTAAAATTTTATGTTCTTTCGTATGGTAAAATAATAATCATAAAACTAACTTTAAAACTAGCTAAGTTATAAGAGTTTAAAAAATTTTCTTGAAAATTTGGCGCCAAAAATTTTTGAACAGTCATAGCTCAGCTAGTTTTCAAGTCAGCTTTTTGATTTGTAAA</canonical_amplicon>
		<polymorphic_amplicon>AGTGTCTCTACCAACTGAGCTACACGGGTGTAAGTTCTGTTGACACCCTTCCTACCGTACCCCAGCACTTACAACCGGTCTGCGTAAAATTTTATGTTCTTTCGTATGGTAAAATAATAATCAWAAAACTAACTTTAAAACTAGCTAAGTTATAAGAGTTTAAAAAATTTTCTTGAAAATTTGGCGCCAAAAATTTTTGAACAGTCATAGCTCAGCTAGTTTTCAAGTCAGCTTTTTGATTTGTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30964</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>138907</contig_pos>
        <strand>+</strand>
        <context>GAGTGTATGA[C/T]CGTAGTAGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGATGAAGACTTGGAAATTGTGAAAACAAACGAAGTGAGAGTGTATGA</left_flank>
        <right_flank>CGTAGTAGGTAAGTGTATATCATCTGGTTTACTGCATTTCAATATTTGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAAAAGCATGAGCAATGACGTACTTGGGAGGGTATAATCTTTAAAAATATAACAAAAAAATTTACCTAATTTGTCCATAAAGTTTTGTCTAATTTAGCTGAAAATCCAAAATTTTTTGAAAGGAAAAACGAACTGAAACCAGTTTAAATGGGCACAGCATCTTCACCTAAAGCATCTTCATGCTATTGTATTATTGACGACTGTGTCTCCGATGATTTTGAATTCAATGGAAAACTGGGACCAATGAGAAAGCTGTTCATTGGTTCAAACGGCCACTGGGTCACTCTCAACAATTTAATCAATTTCGATGTTCTCTTTATTCGCATTCAAGGCTCCATACTCTCCGTTTCCGATTTGAACTCATTTCTAAGACACTGGCGGACCGGTGGATCAGCTCGGTTGGAGTGGTTATACTTGAATTTCGAGAAAGGTATGTTTAGAGAAACGTTTGATGAAGACTTGGAAATTGTGAAAACAAACGAAGTGAGAGTGTATGACCGTAGTAGGTAAGTGTATATCATCTGGTTTACTGCATTTCAATATTTGTTTTTCAGTGATGCATTGGAATGGGTATTTGATGGTGGCTACAGAATCCAGCGTACGGACGGTGTGAAGGCAGAGATTGAATGTGGTCCCGGATGGTTTACAATGGGTGTTTGGCATTAGAGAGCAATCGATTCATTGCAATAACTTAATTATACTAAAACCTTTAAAATGCCTGAAGACATTGATGGATTTTGCTCAAATTTGGAGGGTAGAATTTCTAATAATTCATCAGTAAACTGACCAGATCACTCAATTTTGAGCAGAGTTATCGCTTTTCAAAGTCGCTTCATTTTCGAACACCCCCCCCCGTAACTCTAGGAATCGTATTGAAAATTTTGGATGTTCTCCACTGTTTTACGTTTGATTATTCTCGATAAAATTGTGAAATGGTCTTAATATGTAAATGAAGATTTTTAATAAAACTCTCACAAAGAAAATTGATTTTATTACAT</canonical>
            <polymorphic>CAAAAAAGCATGAGCAATGACGTACTTGGGAGGGTATAATCTTTAAAAATATAACAAAAAAATTTACCTAATTTGTCCATAAAGTTTTGTCTAATTTAGCTGAAAATCCAAAATTTTTTGAAAGGAAAAACGAACTGAAACCAGTTTAAATGGGCACAGCATCTTCACCTAAAGCATCTTCATGCTATTGTATTATTGACGACTGTGTCTCCGATGATTTTGAATTCAATGGAAAACTGGGACCAATGAGAAAGCTGTTCATTGGTTCAAACGGCCACTGGGTCACTCTCAACAATTTAATCAATTTCGATGTTCTCTTTATTCGCATTCAAGGCTCCATACTCTCCGTTTCCGATTTGAACTCATTTCTAAGACACTGGCGGACCGGTGGATCAGCTCGGTTGGAGTGGTTATACTTGAATTTCGAGAAAGGTATGTTTAGAGAAACGTTTGATGAAGACTTGGAAATTGTGAAAACAAACGAAGTGAGAGTGTATGAYCGTAGTAGGTAAGTGTATATCATCTGGTTTACTGCATTTCAATATTTGTTTTTCAGTGATGCATTGGAATGGGTATTTGATGGTGGCTACAGAATCCAGCGTACGGACGGTGTGAAGGCAGAGATTGAATGTGGTCCCGGATGGTTTACAATGGGTGTTTGGCATTAGAGAGCAATCGATTCATTGCAATAACTTAATTATACTAAAACCTTTAAAATGCCTGAAGACATTGATGGATTTTGCTCAAATTTGGAGGGTAGAATTTCTAATAATTCATCAGTAAACTGACCAGATCACTCAATTTTGAGCAGAGTTATCGCTTTTCAAAGTCGCTTCATTTTCGAACACCCCCCCCCGTAACTCTAGGAATCGTATTGAAAATTTTGGATGTTCTCCACTGTTTTACGTTTGATTATTCTCGATAAAATTGTGAAATGGTCTTAATATGTAAATGAAGATTTTTAATAAAACTCTCACAAAGAAAATTGATTTTATTACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>297 290 204 108 101</canonical_bands>
                <polymorphic_bands>405 290 204 101</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTAGAGAAACGTTTGATGAAG</pcr_primer_p1>
		<pcr_primer_p2>ATGAATCGATTGCTCTCTAATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTTAGAGAAACGTTTGATGAAGACTTGGAAATTGTGAAAACAAACGAAGTGAGAGTGTATGACCGTAGTAGGTAAGTGTATATCATCTGGTTTACTGCATTTCAATATTTGTTTTTCAGTGATGCATTGGAATGGGTATTTGATGGTGGCTACAGAATCCAGCGTACGGACGGTGTGAAGGCAGAGATTGAATGTGGTCCCGGATGGTTTACAATGGGTGTTTGGCATTAGAGAGCAATCGATTCAT</canonical_amplicon>
		<polymorphic_amplicon>GTTTAGAGAAACGTTTGATGAAGACTTGGAAATTGTGAAAACAAACGAAGTGAGAGTGTATGAYCGTAGTAGGTAAGTGTATATCATCTGGTTTACTGCATTTCAATATTTGTTTTTCAGTGATGCATTGGAATGGGTATTTGATGGTGGCTACAGAATCCAGCGTACGGACGGTGTGAAGGCAGAGATTGAATGTGGTCCCGGATGGTTTACAATGGGTGTTTGGCATTAGAGAGCAATCGATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30965</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>138941</contig_pos>
        <strand>+</strand>
        <context>CTGGTTTACT[A/G]CATTTCAATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTGAGAGTGTATGACCGTAGTAGGTAAGTGTATATCATCTGGTTTACT</left_flank>
        <right_flank>CATTTCAATATTTGTTTTTCAGTGATGCATTGGAATGGGTATTTGATGGT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATAATCTTTAAAAATATAACAAAAAAATTTACCTAATTTGTCCATAAAGTTTTGTCTAATTTAGCTGAAAATCCAAAATTTTTTGAAAGGAAAAACGAACTGAAACCAGTTTAAATGGGCACAGCATCTTCACCTAAAGCATCTTCATGCTATTGTATTATTGACGACTGTGTCTCCGATGATTTTGAATTCAATGGAAAACTGGGACCAATGAGAAAGCTGTTCATTGGTTCAAACGGCCACTGGGTCACTCTCAACAATTTAATCAATTTCGATGTTCTCTTTATTCGCATTCAAGGCTCCATACTCTCCGTTTCCGATTTGAACTCATTTCTAAGACACTGGCGGACCGGTGGATCAGCTCGGTTGGAGTGGTTATACTTGAATTTCGAGAAAGGTATGTTTAGAGAAACGTTTGATGAAGACTTGGAAATTGTGAAAACAAACGAAGTGAGAGTGTATGACCGTAGTAGGTAAGTGTATATCATCTGGTTTACTGCATTTCAATATTTGTTTTTCAGTGATGCATTGGAATGGGTATTTGATGGTGGCTACAGAATCCAGCGTACGGACGGTGTGAAGGCAGAGATTGAATGTGGTCCCGGATGGTTTACAATGGGTGTTTGGCATTAGAGAGCAATCGATTCATTGCAATAACTTAATTATACTAAAACCTTTAAAATGCCTGAAGACATTGATGGATTTTGCTCAAATTTGGAGGGTAGAATTTCTAATAATTCATCAGTAAACTGACCAGATCACTCAATTTTGAGCAGAGTTATCGCTTTTCAAAGTCGCTTCATTTTCGAACACCCCCCCCCGTAACTCTAGGAATCGTATTGAAAATTTTGGATGTTCTCCACTGTTTTACGTTTGATTATTCTCGATAAAATTGTGAAATGGTCTTAATATGTAAATGAAGATTTTTAATAAAACTCTCACAAAGAAAATTGATTTTATTACATTCAAACAAAACTTTTTTAAAGGCACATGAGAGGA</canonical>
            <polymorphic>TATAATCTTTAAAAATATAACAAAAAAATTTACCTAATTTGTCCATAAAGTTTTGTCTAATTTAGCTGAAAATCCAAAATTTTTTGAAAGGAAAAACGAACTGAAACCAGTTTAAATGGGCACAGCATCTTCACCTAAAGCATCTTCATGCTATTGTATTATTGACGACTGTGTCTCCGATGATTTTGAATTCAATGGAAAACTGGGACCAATGAGAAAGCTGTTCATTGGTTCAAACGGCCACTGGGTCACTCTCAACAATTTAATCAATTTCGATGTTCTCTTTATTCGCATTCAAGGCTCCATACTCTCCGTTTCCGATTTGAACTCATTTCTAAGACACTGGCGGACCGGTGGATCAGCTCGGTTGGAGTGGTTATACTTGAATTTCGAGAAAGGTATGTTTAGAGAAACGTTTGATGAAGACTTGGAAATTGTGAAAACAAACGAAGTGAGAGTGTATGACCGTAGTAGGTAAGTGTATATCATCTGGTTTACTRCATTTCAATATTTGTTTTTCAGTGATGCATTGGAATGGGTATTTGATGGTGGCTACAGAATCCAGCGTACGGACGGTGTGAAGGCAGAGATTGAATGTGGTCCCGGATGGTTTACAATGGGTGTTTGGCATTAGAGAGCAATCGATTCATTGCAATAACTTAATTATACTAAAACCTTTAAAATGCCTGAAGACATTGATGGATTTTGCTCAAATTTGGAGGGTAGAATTTCTAATAATTCATCAGTAAACTGACCAGATCACTCAATTTTGAGCAGAGTTATCGCTTTTCAAAGTCGCTTCATTTTCGAACACCCCCCCCCGTAACTCTAGGAATCGTATTGAAAATTTTGGATGTTCTCCACTGTTTTACGTTTGATTATTCTCGATAAAATTGTGAAATGGTCTTAATATGTAAATGAAGATTTTTAATAAAACTCTCACAAAGAAAATTGATTTTATTACATTCAAACAAAACTTTTTTAAAGGCACATGAGAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 348 125 27</canonical_bands>
                <polymorphic_bands>527 348 125</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACAAACGAAGTGAGAGTGTA</pcr_primer_p1>
		<pcr_primer_p2>CAGGCATTTTAAAGGTTTTAGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAACAAACGAAGTGAGAGTGTATGACCGTAGTAGGTAAGTGTATATCATCTGGTTTACTGCATTTCAATATTTGTTTTTCAGTGATGCATTGGAATGGGTATTTGATGGTGGCTACAGAATCCAGCGTACGGACGGTGTGAAGGCAGAGATTGAATGTGGTCCCGGATGGTTTACAATGGGTGTTTGGCATTAGAGAGCAATCGATTCATTGCAATAACTTAATTATACTAAAACCTTTAAAATGCCTG</canonical_amplicon>
		<polymorphic_amplicon>AAAACAAACGAAGTGAGAGTGTATGACCGTAGTAGGTAAGTGTATATCATCTGGTTTACTRCATTTCAATATTTGTTTTTCAGTGATGCATTGGAATGGGTATTTGATGGTGGCTACAGAATCCAGCGTACGGACGGTGTGAAGGCAGAGATTGAATGTGGTCCCGGATGGTTTACAATGGGTGTTTGGCATTAGAGAGCAATCGATTCATTGCAATAACTTAATTATACTAAAACCTTTAAAATGCCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30966</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>139000</contig_pos>
        <strand>+</strand>
        <context>GTGGCTACAG[A/T]ATCCAGCGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATTTGTTTTTCAGTGATGCATTGGAATGGGTATTTGATGGTGGCTACAG</left_flank>
        <right_flank>ATCCAGCGTACGGACGGTGTGAAGGCAGAGATTGAATGTGGTCCCGGATG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTAGCTGAAAATCCAAAATTTTTTGAAAGGAAAAACGAACTGAAACCAGTTTAAATGGGCACAGCATCTTCACCTAAAGCATCTTCATGCTATTGTATTATTGACGACTGTGTCTCCGATGATTTTGAATTCAATGGAAAACTGGGACCAATGAGAAAGCTGTTCATTGGTTCAAACGGCCACTGGGTCACTCTCAACAATTTAATCAATTTCGATGTTCTCTTTATTCGCATTCAAGGCTCCATACTCTCCGTTTCCGATTTGAACTCATTTCTAAGACACTGGCGGACCGGTGGATCAGCTCGGTTGGAGTGGTTATACTTGAATTTCGAGAAAGGTATGTTTAGAGAAACGTTTGATGAAGACTTGGAAATTGTGAAAACAAACGAAGTGAGAGTGTATGACCGTAGTAGGTAAGTGTATATCATCTGGTTTACTGCATTTCAATATTTGTTTTTCAGTGATGCATTGGAATGGGTATTTGATGGTGGCTACAGAATCCAGCGTACGGACGGTGTGAAGGCAGAGATTGAATGTGGTCCCGGATGGTTTACAATGGGTGTTTGGCATTAGAGAGCAATCGATTCATTGCAATAACTTAATTATACTAAAACCTTTAAAATGCCTGAAGACATTGATGGATTTTGCTCAAATTTGGAGGGTAGAATTTCTAATAATTCATCAGTAAACTGACCAGATCACTCAATTTTGAGCAGAGTTATCGCTTTTCAAAGTCGCTTCATTTTCGAACACCCCCCCCCGTAACTCTAGGAATCGTATTGAAAATTTTGGATGTTCTCCACTGTTTTACGTTTGATTATTCTCGATAAAATTGTGAAATGGTCTTAATATGTAAATGAAGATTTTTAATAAAACTCTCACAAAGAAAATTGATTTTATTACATTCAAACAAAACTTTTTTAAAGGCACATGAGAGGAAAAAAAATGATGGGACACAAGAAAAAAACGACAAGAAATCGAGAAAGGCATTTTGGGAA</canonical>
            <polymorphic>ATTTAGCTGAAAATCCAAAATTTTTTGAAAGGAAAAACGAACTGAAACCAGTTTAAATGGGCACAGCATCTTCACCTAAAGCATCTTCATGCTATTGTATTATTGACGACTGTGTCTCCGATGATTTTGAATTCAATGGAAAACTGGGACCAATGAGAAAGCTGTTCATTGGTTCAAACGGCCACTGGGTCACTCTCAACAATTTAATCAATTTCGATGTTCTCTTTATTCGCATTCAAGGCTCCATACTCTCCGTTTCCGATTTGAACTCATTTCTAAGACACTGGCGGACCGGTGGATCAGCTCGGTTGGAGTGGTTATACTTGAATTTCGAGAAAGGTATGTTTAGAGAAACGTTTGATGAAGACTTGGAAATTGTGAAAACAAACGAAGTGAGAGTGTATGACCGTAGTAGGTAAGTGTATATCATCTGGTTTACTGCATTTCAATATTTGTTTTTCAGTGATGCATTGGAATGGGTATTTGATGGTGGCTACAGWATCCAGCGTACGGACGGTGTGAAGGCAGAGATTGAATGTGGTCCCGGATGGTTTACAATGGGTGTTTGGCATTAGAGAGCAATCGATTCATTGCAATAACTTAATTATACTAAAACCTTTAAAATGCCTGAAGACATTGATGGATTTTGCTCAAATTTGGAGGGTAGAATTTCTAATAATTCATCAGTAAACTGACCAGATCACTCAATTTTGAGCAGAGTTATCGCTTTTCAAAGTCGCTTCATTTTCGAACACCCCCCCCCGTAACTCTAGGAATCGTATTGAAAATTTTGGATGTTCTCCACTGTTTTACGTTTGATTATTCTCGATAAAATTGTGAAATGGTCTTAATATGTAAATGAAGATTTTTAATAAAACTCTCACAAAGAAAATTGATTTTATTACATTCAAACAAAACTTTTTTAAAGGCACATGAGAGGAAAAAAAATGATGGGACACAAGAAAAAAACGACAAGAAATCGAGAAAGGCATTTTGGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>499 226 189 86</canonical_bands>
                <polymorphic_bands>585 226 189</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>499 226 189 86</canonical_bands>
                <polymorphic_bands>585 226 189</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACAAACGAAGTGAGAGTGTA</pcr_primer_p1>
		<pcr_primer_p2>CAGGCATTTTAAAGGTTTTAGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAACAAACGAAGTGAGAGTGTATGACCGTAGTAGGTAAGTGTATATCATCTGGTTTACTGCATTTCAATATTTGTTTTTCAGTGATGCATTGGAATGGGTATTTGATGGTGGCTACAGAATCCAGCGTACGGACGGTGTGAAGGCAGAGATTGAATGTGGTCCCGGATGGTTTACAATGGGTGTTTGGCATTAGAGAGCAATCGATTCATTGCAATAACTTAATTATACTAAAACCTTTAAAATGCCTG</canonical_amplicon>
		<polymorphic_amplicon>AAAACAAACGAAGTGAGAGTGTATGACCGTAGTAGGTAAGTGTATATCATCTGGTTTACTGCATTTCAATATTTGTTTTTCAGTGATGCATTGGAATGGGTATTTGATGGTGGCTACAGWATCCAGCGTACGGACGGTGTGAAGGCAGAGATTGAATGTGGTCCCGGATGGTTTACAATGGGTGTTTGGCATTAGAGAGCAATCGATTCATTGCAATAACTTAATTATACTAAAACCTTTAAAATGCCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30967</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>139164</contig_pos>
        <strand></strand>
        <context>aatttggagg[G/A]tagaatttct</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AACCTTTAAAATGCCTGAAGACATTGATGGATTTTGCTCAAATTTGGAGG</left_flank>
        <right_flank>TAGAATTTCTAATAATTCATCAGTAAACTGACCAGATCACTCAATTTTGA</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCATTGGTTCAAACGGCCACTGGGTCACTCTCAACAATTTAATCAATTTCGATGTTCTCTTTATTCGCATTCAAGGCTCCATACTCTCCGTTTCCGATTTGAACTCATTTCTAAGACACTGGCGGACCGGTGGATCAGCTCGGTTGGAGTGGTTATACTTGAATTTCGAGAAAGGTATGTTTAGAGAAACGTTTGATGAAGACTTGGAAATTGTGAAAACAAACGAAGTGAGAGTGTATGACCGTAGTAGGTAAGTGTATATCATCTGGTTTACTGCATTTCAATATTTGTTTTTCAGTGATGCATTGGAATGGGTATTTGATGGTGGCTACAGAATCCAGCGTACGGACGGTGTGAAGGCAGAGATTGAATGTGGTCCCGGATGGTTTACAATGGGTGTTTGGCATTAGAGAGCAATCGATTCATTGCAATAACTTAATTATACTAAAACCTTTAAAATGCCTGAAGACATTGATGGATTTTGCTCAAATTTGGAGGGTAGAATTTCTAATAATTCATCAGTAAACTGACCAGATCACTCAATTTTGAGCAGAGTTATCGCTTTTCAAAGTCGCTTCATTTTCGAACACCCCCCCCCGTAACTCTAGGAATCGTATTGAAAATTTTGGATGTTCTCCACTGTTTTACGTTTGATTATTCTCGATAAAATTGTGAAATGGTCTTAATATGTAAATGAAGATTTTTAATAAAACTCTCACAAAGAAAATTGATTTTATTACATTCAAACAAAACTTTTTTAAAGGCACATGAGAGGAAAAAAAATGATGGGACACAAGAAAAAAACGACAAGAAATCGAGAAAGGCATTTTGGGAAAAGTCTAAAACGCTAAGAAACTGAGCATGATGATGAGAAAAATGTGATGAAATTTGAAAAAACCCGCGAAATATAATTTTTGTCCGCCAGCAGCACCAGACTGTGGCAACCCATCCAAATAGTCGAGAACCTGAAGGAAAAATATTGTTTTTCAATGGTTTTTG</canonical>
            <polymorphic>TTCATTGGTTCAAACGGCCACTGGGTCACTCTCAACAATTTAATCAATTTCGATGTTCTCTTTATTCGCATTCAAGGCTCCATACTCTCCGTTTCCGATTTGAACTCATTTCTAAGACACTGGCGGACCGGTGGATCAGCTCGGTTGGAGTGGTTATACTTGAATTTCGAGAAAGGTATGTTTAGAGAAACGTTTGATGAAGACTTGGAAATTGTGAAAACAAACGAAGTGAGAGTGTATGACCGTAGTAGGTAAGTGTATATCATCTGGTTTACTGCATTTCAATATTTGTTTTTCAGTGATGCATTGGAATGGGTATTTGATGGTGGCTACAGAATCCAGCGTACGGACGGTGTGAAGGCAGAGATTGAATGTGGTCCCGGATGGTTTACAATGGGTGTTTGGCATTAGAGAGCAATCGATTCATTGCAATAACTTAATTATACTAAAACCTTTAAAATGCCTGAAGACATTGATGGATTTTGCTCAAATTTGGAGGRTAGAATTTCTAATAATTCATCAGTAAACTGACCAGATCACTCAATTTTGAGCAGAGTTATCGCTTTTCAAAGTCGCTTCATTTTCGAACACCCCCCCCCGTAACTCTAGGAATCGTATTGAAAATTTTGGATGTTCTCCACTGTTTTACGTTTGATTATTCTCGATAAAATTGTGAAATGGTCTTAATATGTAAATGAAGATTTTTAATAAAACTCTCACAAAGAAAATTGATTTTATTACATTCAAACAAAACTTTTTTAAAGGCACATGAGAGGAAAAAAAATGATGGGACACAAGAAAAAAACGACAAGAAATCGAGAAAGGCATTTTGGGAAAAGTCTAAAACGCTAAGAAACTGAGCATGATGATGAGAAAAATGTGATGAAATTTGAAAAAACCCGCGAAATATAATTTTTGTCCGCCAGCAGCACCAGACTGTGGCAACCCATCCAAATAGTCGAGAACCTGAAGGAAAAATATTGTTTTTCAATGGTTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGGTTTACAATGGGTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TCCAAAATTTTCAATACGATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATGGTTTACAATGGGTGTTTGGCATTAGAGAGCAATCGATTCATTGCAATAACTTAATTATACTAAAACCTTTAAAATGCCTGAAGACATTGATGGATTTTGCTCAAATTTGGAGGGTAGAATTTCTAATAATTCATCAGTAAACTGACCAGATCACTCAATTTTGAGCAGAGTTATCGCTTTTCAAAGTCGCTTCATTTTCGAACACCCCCCCCCGTAACTCTAGGAATCGTATTGAAAATTTTGGA</canonical_amplicon>
		<polymorphic_amplicon>GATGGTTTACAATGGGTGTTTGGCATTAGAGAGCAATCGATTCATTGCAATAACTTAATTATACTAAAACCTTTAAAATGCCTGAAGACATTGATGGATTTTGCTCAAATTTGGAGGRTAGAATTTCTAATAATTCATCAGTAAACTGACCAGATCACTCAATTTTGAGCAGAGTTATCGCTTTTCAAAGTCGCTTCATTTTCGAACACCCCCCCCCGTAACTCTAGGAATCGTATTGAAAATTTTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30968</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>139240</contig_pos>
        <strand>+</strand>
        <context>ttcaaagtcg[A/C]wycatttTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACTGACCAGATCACTCAATTTTGAGCAGAGTTATCGCTTTTCAAAGTCG</left_flank>
        <right_flank>TTCATTTTCGAACACCCCCCCCCGTAACTCTAGGAATCGTATTGAAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCCATACTCTCCGTTTCCGATTTGAACTCATTTCTAAGACACTGGCGGACCGGTGGATCAGCTCGGTTGGAGTGGTTATACTTGAATTTCGAGAAAGGTATGTTTAGAGAAACGTTTGATGAAGACTTGGAAATTGTGAAAACAAACGAAGTGAGAGTGTATGACCGTAGTAGGTAAGTGTATATCATCTGGTTTACTGCATTTCAATATTTGTTTTTCAGTGATGCATTGGAATGGGTATTTGATGGTGGCTACAGAATCCAGCGTACGGACGGTGTGAAGGCAGAGATTGAATGTGGTCCCGGATGGTTTACAATGGGTGTTTGGCATTAGAGAGCAATCGATTCATTGCAATAACTTAATTATACTAAAACCTTTAAAATGCCTGAAGACATTGATGGATTTTGCTCAAATTTGGAGGGTAGAATTTCTAATAATTCATCAGTAAACTGACCAGATCACTCAATTTTGAGCAGAGTTATCGCTTTTCAAAGTCGCTTCATTTTCGAACACCCCCCCCCGTAACTCTAGGAATCGTATTGAAAATTTTGGATGTTCTCCACTGTTTTACGTTTGATTATTCTCGATAAAATTGTGAAATGGTCTTAATATGTAAATGAAGATTTTTAATAAAACTCTCACAAAGAAAATTGATTTTATTACATTCAAACAAAACTTTTTTAAAGGCACATGAGAGGAAAAAAAATGATGGGACACAAGAAAAAAACGACAAGAAATCGAGAAAGGCATTTTGGGAAAAGTCTAAAACGCTAAGAAACTGAGCATGATGATGAGAAAAATGTGATGAAATTTGAAAAAACCCGCGAAATATAATTTTTGTCCGCCAGCAGCACCAGACTGTGGCAACCCATCCAAATAGTCGAGAACCTGAAGGAAAAATATTGTTTTTCAATGGTTTTTGTCACTAAAATCGAGTTTAGAGCAAAAAATTGGTCTAGAAATTGTGTTTTTGAGAAAAAATTCGAAAGAAAAATTTT</canonical>
            <polymorphic>GCTCCATACTCTCCGTTTCCGATTTGAACTCATTTCTAAGACACTGGCGGACCGGTGGATCAGCTCGGTTGGAGTGGTTATACTTGAATTTCGAGAAAGGTATGTTTAGAGAAACGTTTGATGAAGACTTGGAAATTGTGAAAACAAACGAAGTGAGAGTGTATGACCGTAGTAGGTAAGTGTATATCATCTGGTTTACTGCATTTCAATATTTGTTTTTCAGTGATGCATTGGAATGGGTATTTGATGGTGGCTACAGAATCCAGCGTACGGACGGTGTGAAGGCAGAGATTGAATGTGGTCCCGGATGGTTTACAATGGGTGTTTGGCATTAGAGAGCAATCGATTCATTGCAATAACTTAATTATACTAAAACCTTTAAAATGCCTGAAGACATTGATGGATTTTGCTCAAATTTGGAGGGTAGAATTTCTAATAATTCATCAGTAAACTGACCAGATCACTCAATTTTGAGCAGAGTTATCGCTTTTCAAAGTCGMTTCATTTTCGAACACCCCCCCCCGTAACTCTAGGAATCGTATTGAAAATTTTGGATGTTCTCCACTGTTTTACGTTTGATTATTCTCGATAAAATTGTGAAATGGTCTTAATATGTAAATGAAGATTTTTAATAAAACTCTCACAAAGAAAATTGATTTTATTACATTCAAACAAAACTTTTTTAAAGGCACATGAGAGGAAAAAAAATGATGGGACACAAGAAAAAAACGACAAGAAATCGAGAAAGGCATTTTGGGAAAAGTCTAAAACGCTAAGAAACTGAGCATGATGATGAGAAAAATGTGATGAAATTTGAAAAAACCCGCGAAATATAATTTTTGTCCGCCAGCAGCACCAGACTGTGGCAACCCATCCAAATAGTCGAGAACCTGAAGGAAAAATATTGTTTTTCAATGGTTTTTGTCACTAAAATCGAGTTTAGAGCAAAAAATTGGTCTAGAAATTGTGTTTTTGAGAAAAAATTCGAAAGAAAAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGGTTTACAATGGGTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TCCAAAATTTTCAATACGATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATGGTTTACAATGGGTGTTTGGCATTAGAGAGCAATCGATTCATTGCAATAACTTAATTATACTAAAACCTTTAAAATGCCTGAAGACATTGATGGATTTTGCTCAAATTTGGAGGGTAGAATTTCTAATAATTCATCAGTAAACTGACCAGATCACTCAATTTTGAGCAGAGTTATCGCTTTTCAAAGTCGCTTCATTTTCGAACACCCCCCCCCGTAACTCTAGGAATCGTATTGAAAATTTTGGA</canonical_amplicon>
		<polymorphic_amplicon>GATGGTTTACAATGGGTGTTTGGCATTAGAGAGCAATCGATTCATTGCAATAACTTAATTATACTAAAACCTTTAAAATGCCTGAAGACATTGATGGATTTTGCTCAAATTTGGAGGGTAGAATTTCTAATAATTCATCAGTAAACTGACCAGATCACTCAATTTTGAGCAGAGTTATCGCTTTTCAAAGTCGMTTCATTTTCGAACACCCCCCCCCGTAACTCTAGGAATCGTATTGAAAATTTTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30969</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>139241</contig_pos>
        <strand>+</strand>
        <context>tcaaagtcgm[A/T]ycatttTCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTGACCAGATCACTCAATTTTGAGCAGAGTTATCGCTTTTCAAAGTCGC</left_flank>
        <right_flank>TCATTTTCGAACACCCCCCCCCGTAACTCTAGGAATCGTATTGAAAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCATACTCTCCGTTTCCGATTTGAACTCATTTCTAAGACACTGGCGGACCGGTGGATCAGCTCGGTTGGAGTGGTTATACTTGAATTTCGAGAAAGGTATGTTTAGAGAAACGTTTGATGAAGACTTGGAAATTGTGAAAACAAACGAAGTGAGAGTGTATGACCGTAGTAGGTAAGTGTATATCATCTGGTTTACTGCATTTCAATATTTGTTTTTCAGTGATGCATTGGAATGGGTATTTGATGGTGGCTACAGAATCCAGCGTACGGACGGTGTGAAGGCAGAGATTGAATGTGGTCCCGGATGGTTTACAATGGGTGTTTGGCATTAGAGAGCAATCGATTCATTGCAATAACTTAATTATACTAAAACCTTTAAAATGCCTGAAGACATTGATGGATTTTGCTCAAATTTGGAGGGTAGAATTTCTAATAATTCATCAGTAAACTGACCAGATCACTCAATTTTGAGCAGAGTTATCGCTTTTCAAAGTCGCTTCATTTTCGAACACCCCCCCCCGTAACTCTAGGAATCGTATTGAAAATTTTGGATGTTCTCCACTGTTTTACGTTTGATTATTCTCGATAAAATTGTGAAATGGTCTTAATATGTAAATGAAGATTTTTAATAAAACTCTCACAAAGAAAATTGATTTTATTACATTCAAACAAAACTTTTTTAAAGGCACATGAGAGGAAAAAAAATGATGGGACACAAGAAAAAAACGACAAGAAATCGAGAAAGGCATTTTGGGAAAAGTCTAAAACGCTAAGAAACTGAGCATGATGATGAGAAAAATGTGATGAAATTTGAAAAAACCCGCGAAATATAATTTTTGTCCGCCAGCAGCACCAGACTGTGGCAACCCATCCAAATAGTCGAGAACCTGAAGGAAAAATATTGTTTTTCAATGGTTTTTGTCACTAAAATCGAGTTTAGAGCAAAAAATTGGTCTAGAAATTGTGTTTTTGAGAAAAAATTCGAAAGAAAAATTTTT</canonical>
            <polymorphic>CTCCATACTCTCCGTTTCCGATTTGAACTCATTTCTAAGACACTGGCGGACCGGTGGATCAGCTCGGTTGGAGTGGTTATACTTGAATTTCGAGAAAGGTATGTTTAGAGAAACGTTTGATGAAGACTTGGAAATTGTGAAAACAAACGAAGTGAGAGTGTATGACCGTAGTAGGTAAGTGTATATCATCTGGTTTACTGCATTTCAATATTTGTTTTTCAGTGATGCATTGGAATGGGTATTTGATGGTGGCTACAGAATCCAGCGTACGGACGGTGTGAAGGCAGAGATTGAATGTGGTCCCGGATGGTTTACAATGGGTGTTTGGCATTAGAGAGCAATCGATTCATTGCAATAACTTAATTATACTAAAACCTTTAAAATGCCTGAAGACATTGATGGATTTTGCTCAAATTTGGAGGGTAGAATTTCTAATAATTCATCAGTAAACTGACCAGATCACTCAATTTTGAGCAGAGTTATCGCTTTTCAAAGTCGCWTCATTTTCGAACACCCCCCCCCGTAACTCTAGGAATCGTATTGAAAATTTTGGATGTTCTCCACTGTTTTACGTTTGATTATTCTCGATAAAATTGTGAAATGGTCTTAATATGTAAATGAAGATTTTTAATAAAACTCTCACAAAGAAAATTGATTTTATTACATTCAAACAAAACTTTTTTAAAGGCACATGAGAGGAAAAAAAATGATGGGACACAAGAAAAAAACGACAAGAAATCGAGAAAGGCATTTTGGGAAAAGTCTAAAACGCTAAGAAACTGAGCATGATGATGAGAAAAATGTGATGAAATTTGAAAAAACCCGCGAAATATAATTTTTGTCCGCCAGCAGCACCAGACTGTGGCAACCCATCCAAATAGTCGAGAACCTGAAGGAAAAATATTGTTTTTCAATGGTTTTTGTCACTAAAATCGAGTTTAGAGCAAAAAATTGGTCTAGAAATTGTGTTTTTGAGAAAAAATTCGAAAGAAAAATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGGTTTACAATGGGTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TCCAAAATTTTCAATACGATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATGGTTTACAATGGGTGTTTGGCATTAGAGAGCAATCGATTCATTGCAATAACTTAATTATACTAAAACCTTTAAAATGCCTGAAGACATTGATGGATTTTGCTCAAATTTGGAGGGTAGAATTTCTAATAATTCATCAGTAAACTGACCAGATCACTCAATTTTGAGCAGAGTTATCGCTTTTCAAAGTCGCTTCATTTTCGAACACCCCCCCCCGTAACTCTAGGAATCGTATTGAAAATTTTGGA</canonical_amplicon>
		<polymorphic_amplicon>GATGGTTTACAATGGGTGTTTGGCATTAGAGAGCAATCGATTCATTGCAATAACTTAATTATACTAAAACCTTTAAAATGCCTGAAGACATTGATGGATTTTGCTCAAATTTGGAGGGTAGAATTTCTAATAATTCATCAGTAAACTGACCAGATCACTCAATTTTGAGCAGAGTTATCGCTTTTCAAAGTCGCWTCATTTTCGAACACCCCCCCCCGTAACTCTAGGAATCGTATTGAAAATTTTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30970</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>139242</contig_pos>
        <strand></strand>
        <context>caaagtcgmw[T/C]catttTCGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTGACCAGATCACTCAATTTTGAGCAGAGTTATCGCTTTTCAAAGTCGCT</left_flank>
        <right_flank>CATTTTCGAACACCCCCCCCCGTAACTCTAGGAATCGTATTGAAAATTTT</right_flank>
        <qual_score>49</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCATACTCTCCGTTTCCGATTTGAACTCATTTCTAAGACACTGGCGGACCGGTGGATCAGCTCGGTTGGAGTGGTTATACTTGAATTTCGAGAAAGGTATGTTTAGAGAAACGTTTGATGAAGACTTGGAAATTGTGAAAACAAACGAAGTGAGAGTGTATGACCGTAGTAGGTAAGTGTATATCATCTGGTTTACTGCATTTCAATATTTGTTTTTCAGTGATGCATTGGAATGGGTATTTGATGGTGGCTACAGAATCCAGCGTACGGACGGTGTGAAGGCAGAGATTGAATGTGGTCCCGGATGGTTTACAATGGGTGTTTGGCATTAGAGAGCAATCGATTCATTGCAATAACTTAATTATACTAAAACCTTTAAAATGCCTGAAGACATTGATGGATTTTGCTCAAATTTGGAGGGTAGAATTTCTAATAATTCATCAGTAAACTGACCAGATCACTCAATTTTGAGCAGAGTTATCGCTTTTCAAAGTCGCTTCATTTTCGAACACCCCCCCCCGTAACTCTAGGAATCGTATTGAAAATTTTGGATGTTCTCCACTGTTTTACGTTTGATTATTCTCGATAAAATTGTGAAATGGTCTTAATATGTAAATGAAGATTTTTAATAAAACTCTCACAAAGAAAATTGATTTTATTACATTCAAACAAAACTTTTTTAAAGGCACATGAGAGGAAAAAAAATGATGGGACACAAGAAAAAAACGACAAGAAATCGAGAAAGGCATTTTGGGAAAAGTCTAAAACGCTAAGAAACTGAGCATGATGATGAGAAAAATGTGATGAAATTTGAAAAAACCCGCGAAATATAATTTTTGTCCGCCAGCAGCACCAGACTGTGGCAACCCATCCAAATAGTCGAGAACCTGAAGGAAAAATATTGTTTTTCAATGGTTTTTGTCACTAAAATCGAGTTTAGAGCAAAAAATTGGTCTAGAAATTGTGTTTTTGAGAAAAAATTCGAAAGAAAAATTTTTT</canonical>
            <polymorphic>TCCATACTCTCCGTTTCCGATTTGAACTCATTTCTAAGACACTGGCGGACCGGTGGATCAGCTCGGTTGGAGTGGTTATACTTGAATTTCGAGAAAGGTATGTTTAGAGAAACGTTTGATGAAGACTTGGAAATTGTGAAAACAAACGAAGTGAGAGTGTATGACCGTAGTAGGTAAGTGTATATCATCTGGTTTACTGCATTTCAATATTTGTTTTTCAGTGATGCATTGGAATGGGTATTTGATGGTGGCTACAGAATCCAGCGTACGGACGGTGTGAAGGCAGAGATTGAATGTGGTCCCGGATGGTTTACAATGGGTGTTTGGCATTAGAGAGCAATCGATTCATTGCAATAACTTAATTATACTAAAACCTTTAAAATGCCTGAAGACATTGATGGATTTTGCTCAAATTTGGAGGGTAGAATTTCTAATAATTCATCAGTAAACTGACCAGATCACTCAATTTTGAGCAGAGTTATCGCTTTTCAAAGTCGCTYCATTTTCGAACACCCCCCCCCGTAACTCTAGGAATCGTATTGAAAATTTTGGATGTTCTCCACTGTTTTACGTTTGATTATTCTCGATAAAATTGTGAAATGGTCTTAATATGTAAATGAAGATTTTTAATAAAACTCTCACAAAGAAAATTGATTTTATTACATTCAAACAAAACTTTTTTAAAGGCACATGAGAGGAAAAAAAATGATGGGACACAAGAAAAAAACGACAAGAAATCGAGAAAGGCATTTTGGGAAAAGTCTAAAACGCTAAGAAACTGAGCATGATGATGAGAAAAATGTGATGAAATTTGAAAAAACCCGCGAAATATAATTTTTGTCCGCCAGCAGCACCAGACTGTGGCAACCCATCCAAATAGTCGAGAACCTGAAGGAAAAATATTGTTTTTCAATGGTTTTTGTCACTAAAATCGAGTTTAGAGCAAAAAATTGGTCTAGAAATTGTGTTTTTGAGAAAAAATTCGAAAGAAAAATTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGGTTTACAATGGGTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TCCAAAATTTTCAATACGATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATGGTTTACAATGGGTGTTTGGCATTAGAGAGCAATCGATTCATTGCAATAACTTAATTATACTAAAACCTTTAAAATGCCTGAAGACATTGATGGATTTTGCTCAAATTTGGAGGGTAGAATTTCTAATAATTCATCAGTAAACTGACCAGATCACTCAATTTTGAGCAGAGTTATCGCTTTTCAAAGTCGCTTCATTTTCGAACACCCCCCCCCGTAACTCTAGGAATCGTATTGAAAATTTTGGA</canonical_amplicon>
		<polymorphic_amplicon>GATGGTTTACAATGGGTGTTTGGCATTAGAGAGCAATCGATTCATTGCAATAACTTAATTATACTAAAACCTTTAAAATGCCTGAAGACATTGATGGATTTTGCTCAAATTTGGAGGGTAGAATTTCTAATAATTCATCAGTAAACTGACCAGATCACTCAATTTTGAGCAGAGTTATCGCTTTTCAAAGTCGCTYCATTTTCGAACACCCCCCCCCGTAACTCTAGGAATCGTATTGAAAATTTTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30971</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>139254</contig_pos>
        <strand>+</strand>
        <context>atttTCGAAC[A/C]CCCCCCCCCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTCAATTTTGAGCAGAGTTATCGCTTTTCAAAGTCGCTTCATTTTCGAAC</left_flank>
        <right_flank>CCCCCCCCCGTAACTCTAGGAATCGTATTGAAAATTTTGGATGTTCTCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTCCGATTTGAACTCATTTCTAAGACACTGGCGGACCGGTGGATCAGCTCGGTTGGAGTGGTTATACTTGAATTTCGAGAAAGGTATGTTTAGAGAAACGTTTGATGAAGACTTGGAAATTGTGAAAACAAACGAAGTGAGAGTGTATGACCGTAGTAGGTAAGTGTATATCATCTGGTTTACTGCATTTCAATATTTGTTTTTCAGTGATGCATTGGAATGGGTATTTGATGGTGGCTACAGAATCCAGCGTACGGACGGTGTGAAGGCAGAGATTGAATGTGGTCCCGGATGGTTTACAATGGGTGTTTGGCATTAGAGAGCAATCGATTCATTGCAATAACTTAATTATACTAAAACCTTTAAAATGCCTGAAGACATTGATGGATTTTGCTCAAATTTGGAGGGTAGAATTTCTAATAATTCATCAGTAAACTGACCAGATCACTCAATTTTGAGCAGAGTTATCGCTTTTCAAAGTCGCTTCATTTTCGAACACCCCCCCCCGTAACTCTAGGAATCGTATTGAAAATTTTGGATGTTCTCCACTGTTTTACGTTTGATTATTCTCGATAAAATTGTGAAATGGTCTTAATATGTAAATGAAGATTTTTAATAAAACTCTCACAAAGAAAATTGATTTTATTACATTCAAACAAAACTTTTTTAAAGGCACATGAGAGGAAAAAAAATGATGGGACACAAGAAAAAAACGACAAGAAATCGAGAAAGGCATTTTGGGAAAAGTCTAAAACGCTAAGAAACTGAGCATGATGATGAGAAAAATGTGATGAAATTTGAAAAAACCCGCGAAATATAATTTTTGTCCGCCAGCAGCACCAGACTGTGGCAACCCATCCAAATAGTCGAGAACCTGAAGGAAAAATATTGTTTTTCAATGGTTTTTGTCACTAAAATCGAGTTTAGAGCAAAAAATTGGTCTAGAAATTGTGTTTTTGAGAAAAAATTCGAAAGAAAAATTTTTTTCTTCAAAATTA</canonical>
            <polymorphic>GTTTCCGATTTGAACTCATTTCTAAGACACTGGCGGACCGGTGGATCAGCTCGGTTGGAGTGGTTATACTTGAATTTCGAGAAAGGTATGTTTAGAGAAACGTTTGATGAAGACTTGGAAATTGTGAAAACAAACGAAGTGAGAGTGTATGACCGTAGTAGGTAAGTGTATATCATCTGGTTTACTGCATTTCAATATTTGTTTTTCAGTGATGCATTGGAATGGGTATTTGATGGTGGCTACAGAATCCAGCGTACGGACGGTGTGAAGGCAGAGATTGAATGTGGTCCCGGATGGTTTACAATGGGTGTTTGGCATTAGAGAGCAATCGATTCATTGCAATAACTTAATTATACTAAAACCTTTAAAATGCCTGAAGACATTGATGGATTTTGCTCAAATTTGGAGGGTAGAATTTCTAATAATTCATCAGTAAACTGACCAGATCACTCAATTTTGAGCAGAGTTATCGCTTTTCAAAGTCGCTTCATTTTCGAACMCCCCCCCCCGTAACTCTAGGAATCGTATTGAAAATTTTGGATGTTCTCCACTGTTTTACGTTTGATTATTCTCGATAAAATTGTGAAATGGTCTTAATATGTAAATGAAGATTTTTAATAAAACTCTCACAAAGAAAATTGATTTTATTACATTCAAACAAAACTTTTTTAAAGGCACATGAGAGGAAAAAAAATGATGGGACACAAGAAAAAAACGACAAGAAATCGAGAAAGGCATTTTGGGAAAAGTCTAAAACGCTAAGAAACTGAGCATGATGATGAGAAAAATGTGATGAAATTTGAAAAAACCCGCGAAATATAATTTTTGTCCGCCAGCAGCACCAGACTGTGGCAACCCATCCAAATAGTCGAGAACCTGAAGGAAAAATATTGTTTTTCAATGGTTTTTGTCACTAAAATCGAGTTTAGAGCAAAAAATTGGTCTAGAAATTGTGTTTTTGAGAAAAAATTCGAAAGAAAAATTTTTTTCTTCAAAATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>139 88 64 62 51 50 49 48 45 44 43 42 35 29 27 27 27 24 21 19 19 15 14 10 6 2</canonical_bands>
                <polymorphic_bands>139 101 88 64 62 49 48 45 44 43 42 35 29 27 27 27 24 21 19 19 15 14 10 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGGCATTAGAGAGCAATC</pcr_primer_p1>
		<pcr_primer_p2>ACGTAAAACAGTGGAGAACATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTGGCATTAGAGAGCAATCGATTCATTGCAATAACTTAATTATACTAAAACCTTTAAAATGCCTGAAGACATTGATGGATTTTGCTCAAATTTGGAGGGTAGAATTTCTAATAATTCATCAGTAAACTGACCAGATCACTCAATTTTGAGCAGAGTTATCGCTTTTCAAAGTCGCTTCATTTTCGAACACCCCCCCCCGTAACTCTAGGAATCGTATTGAAAATTTTGGATGTTCTCCACTGTTTTACGT</canonical_amplicon>
		<polymorphic_amplicon>TTTGGCATTAGAGAGCAATCGATTCATTGCAATAACTTAATTATACTAAAACCTTTAAAATGCCTGAAGACATTGATGGATTTTGCTCAAATTTGGAGGGTAGAATTTCTAATAATTCATCAGTAAACTGACCAGATCACTCAATTTTGAGCAGAGTTATCGCTTTTCAAAGTCGCTTCATTTTCGAACMCCCCCCCCCGTAACTCTAGGAATCGTATTGAAAATTTTGGATGTTCTCCACTGTTTTACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30972</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>139413</contig_pos>
        <strand>+</strand>
        <context>TACATTCAAA[C/T]AAAACTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGATTTTTAATAAAACTCTCACAAAGAAAATTGATTTTATTACATTCAAA</left_flank>
        <right_flank>AAAACTTTTTTAAAGGCACATGAGAGGAAAAAAAATGATGGGACACAAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTAAGTGTATATCATCTGGTTTACTGCATTTCAATATTTGTTTTTCAGTGATGCATTGGAATGGGTATTTGATGGTGGCTACAGAATCCAGCGTACGGACGGTGTGAAGGCAGAGATTGAATGTGGTCCCGGATGGTTTACAATGGGTGTTTGGCATTAGAGAGCAATCGATTCATTGCAATAACTTAATTATACTAAAACCTTTAAAATGCCTGAAGACATTGATGGATTTTGCTCAAATTTGGAGGGTAGAATTTCTAATAATTCATCAGTAAACTGACCAGATCACTCAATTTTGAGCAGAGTTATCGCTTTTCAAAGTCGCTTCATTTTCGAACACCCCCCCCCGTAACTCTAGGAATCGTATTGAAAATTTTGGATGTTCTCCACTGTTTTACGTTTGATTATTCTCGATAAAATTGTGAAATGGTCTTAATATGTAAATGAAGATTTTTAATAAAACTCTCACAAAGAAAATTGATTTTATTACATTCAAACAAAACTTTTTTAAAGGCACATGAGAGGAAAAAAAATGATGGGACACAAGAAAAAAACGACAAGAAATCGAGAAAGGCATTTTGGGAAAAGTCTAAAACGCTAAGAAACTGAGCATGATGATGAGAAAAATGTGATGAAATTTGAAAAAACCCGCGAAATATAATTTTTGTCCGCCAGCAGCACCAGACTGTGGCAACCCATCCAAATAGTCGAGAACCTGAAGGAAAAATATTGTTTTTCAATGGTTTTTGTCACTAAAATCGAGTTTAGAGCAAAAAATTGGTCTAGAAATTGTGTTTTTGAGAAAAAATTCGAAAGAAAAATTTTTTTCTTCAAAATTAAAAAAAACCCAAAACTCACTTTGACTTGTTTTACAGTTGACAGTACCAACTGAAAACGTGGTGATTCGTTGAGCGAAAAGTGATCGGCCAATTTTCGTACGTACGGTGAGCAGATCTGAAAATTTTGGAGTTTTGCTGAAAAAAACATTTTTCGAGAAA</canonical>
            <polymorphic>AGGTAAGTGTATATCATCTGGTTTACTGCATTTCAATATTTGTTTTTCAGTGATGCATTGGAATGGGTATTTGATGGTGGCTACAGAATCCAGCGTACGGACGGTGTGAAGGCAGAGATTGAATGTGGTCCCGGATGGTTTACAATGGGTGTTTGGCATTAGAGAGCAATCGATTCATTGCAATAACTTAATTATACTAAAACCTTTAAAATGCCTGAAGACATTGATGGATTTTGCTCAAATTTGGAGGGTAGAATTTCTAATAATTCATCAGTAAACTGACCAGATCACTCAATTTTGAGCAGAGTTATCGCTTTTCAAAGTCGCTTCATTTTCGAACACCCCCCCCCGTAACTCTAGGAATCGTATTGAAAATTTTGGATGTTCTCCACTGTTTTACGTTTGATTATTCTCGATAAAATTGTGAAATGGTCTTAATATGTAAATGAAGATTTTTAATAAAACTCTCACAAAGAAAATTGATTTTATTACATTCAAAYAAAACTTTTTTAAAGGCACATGAGAGGAAAAAAAATGATGGGACACAAGAAAAAAACGACAAGAAATCGAGAAAGGCATTTTGGGAAAAGTCTAAAACGCTAAGAAACTGAGCATGATGATGAGAAAAATGTGATGAAATTTGAAAAAACCCGCGAAATATAATTTTTGTCCGCCAGCAGCACCAGACTGTGGCAACCCATCCAAATAGTCGAGAACCTGAAGGAAAAATATTGTTTTTCAATGGTTTTTGTCACTAAAATCGAGTTTAGAGCAAAAAATTGGTCTAGAAATTGTGTTTTTGAGAAAAAATTCGAAAGAAAAATTTTTTTCTTCAAAATTAAAAAAAACCCAAAACTCACTTTGACTTGTTTTACAGTTGACAGTACCAACTGAAAACGTGGTGATTCGTTGAGCGAAAAGTGATCGGCCAATTTTCGTACGTACGGTGAGCAGATCTGAAAATTTTGGAGTTTTGCTGAAAAAAACATTTTTCGAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACTGTTTTACGTTTGATTATT</pcr_primer_p1>
		<pcr_primer_p2>TTTCATCACATTTTTCTCATCAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCACTGTTTTACGTTTGATTATTCTCGATAAAATTGTGAAATGGTCTTAATATGTAAATGAAGATTTTTAATAAAACTCTCACAAAGAAAATTGATTTTATTACATTCAAACAAAACTTTTTTAAAGGCACATGAGAGGAAAAAAAATGATGGGACACAAGAAAAAAACGACAAGAAATCGAGAAAGGCATTTTGGGAAAAGTCTAAAACGCTAAGAAACTGAGCATGATGATGAGAAAAATGTGATGAAA</canonical_amplicon>
		<polymorphic_amplicon>CCACTGTTTTACGTTTGATTATTCTCGATAAAATTGTGAAATGGTCTTAATATGTAAATGAAGATTTTTAATAAAACTCTCACAAAGAAAATTGATTTTATTACATTCAAAYAAAACTTTTTTAAAGGCACATGAGAGGAAAAAAAATGATGGGACACAAGAAAAAAACGACAAGAAATCGAGAAAGGCATTTTGGGAAAAGTCTAAAACGCTAAGAAACTGAGCATGATGATGAGAAAAATGTGATGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30973</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>178909</contig_pos>
        <strand>+</strand>
        <context>TAATTTTCTG[A/G]TTTTATTGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTG</left_flank>
        <right_flank>TTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATTTTGGCACATTCTAGGCCGTTTTTTTTGGTTTTTGGGTCTTTTTTGATGGAAAAAATTGTGTAAAACGCTTCAAAACCCATCGAACGTTGAGAAAATCGAGAAAAAATCGTTTAAAAAACCGAATTTTTGGGAAATTTGGTTTTCTAGGCCACCAGAGACTATTTTAGGCGTATCTCGGCTCATTTTGGACCGTTTTTAGTAATTTTTTCTGGAATGTCCACTAAAAAGTGTCTATTTTCAGAATACGTCGCTCGATACGCCACCGAAAAGACGCCAGCAGACGCGCCAGCCACCAAAAAAGCGCAAGAGCCGGAAACTTTGGCCACGTGGCACGACTCGACGAGTCCCGACGACGATGATAACATATCATTGAGCAGTCTCTCAGAAATCGATCCAGATGACGTAGCGAGTTTCGAGGAGTTCGAGAAGGAGTACGATGCGAGAATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTGATTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATC</canonical>
            <polymorphic>CTATTTTGGCACATTCTAGGCCGTTTTTTTTGGTTTTTGGGTCTTTTTTGATGGAAAAAATTGTGTAAAACGCTTCAAAACCCATCGAACGTTGAGAAAATCGAGAAAAAATCGTTTAAAAAACCGAATTTTTGGGAAATTTGGTTTTCTAGGCCACCAGAGACTATTTTAGGCGTATCTCGGCTCATTTTGGACCGTTTTTAGTAATTTTTTCTGGAATGTCCACTAAAAAGTGTCTATTTTCAGAATACGTCGCTCGATACGCCACCGAAAAGACGCCAGCAGACGCGCCAGCCACCAAAAAAGCGCAAGAGCCGGAAACTTTGGCCACGTGGCACGACTCGACGAGTCCCGACGACGATGATAACATATCATTGAGCAGTCTCTCAGAAATCGATCCAGATGACGTAGCGAGTTTCGAGGAGTTCGAGAAGGAGTACGATGCGAGAATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTGRTTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>502 245 144 109</canonical_bands>
                <polymorphic_bands>611 245 144</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAGAAATCGATCCAGATG</pcr_primer_p1>
		<pcr_primer_p2>AGTTTTGGTGGCCTAGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTCAGAAATCGATCCAGATGACGTAGCGAGTTTCGAGGAGTTCGAGAAGGAGTACGATGCGAGAATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTGATTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACT</canonical_amplicon>
		<polymorphic_amplicon>CTCAGAAATCGATCCAGATGACGTAGCGAGTTTCGAGGAGTTCGAGAAGGAGTACGATGCGAGAATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTGRTTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30974</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>179000</contig_pos>
        <strand>+</strand>
        <context>ACTCGAAAAG[C/T]CTAGTTTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAG</left_flank>
        <right_flank>CTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAGAAAATCGAGAAAAAATCGTTTAAAAAACCGAATTTTTGGGAAATTTGGTTTTCTAGGCCACCAGAGACTATTTTAGGCGTATCTCGGCTCATTTTGGACCGTTTTTAGTAATTTTTTCTGGAATGTCCACTAAAAAGTGTCTATTTTCAGAATACGTCGCTCGATACGCCACCGAAAAGACGCCAGCAGACGCGCCAGCCACCAAAAAAGCGCAAGAGCCGGAAACTTTGGCCACGTGGCACGACTCGACGAGTCCCGACGACGATGATAACATATCATTGAGCAGTCTCTCAGAAATCGATCCAGATGACGTAGCGAGTTTCGAGGAGTTCGAGAAGGAGTACGATGCGAGAATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTGATTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCGACCTCAAAAAAGACGCCCCCACACAGCCCATTCATTCTG</canonical>
            <polymorphic>TTGAGAAAATCGAGAAAAAATCGTTTAAAAAACCGAATTTTTGGGAAATTTGGTTTTCTAGGCCACCAGAGACTATTTTAGGCGTATCTCGGCTCATTTTGGACCGTTTTTAGTAATTTTTTCTGGAATGTCCACTAAAAAGTGTCTATTTTCAGAATACGTCGCTCGATACGCCACCGAAAAGACGCCAGCAGACGCGCCAGCCACCAAAAAAGCGCAAGAGCCGGAAACTTTGGCCACGTGGCACGACTCGACGAGTCCCGACGACGATGATAACATATCATTGAGCAGTCTCTCAGAAATCGATCCAGATGACGTAGCGAGTTTCGAGGAGTTCGAGAAGGAGTACGATGCGAGAATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTGATTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGYCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCGACCTCAAAAAAGACGCCCCCACACAGCCCATTCATTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>134 126 111 94 89 62 62 48 31 30 30 20 20 20 20 16 15 15 14 13 13 7 6 4</canonical_bands>
                <polymorphic_bands>134 126 111 94 89 78 62 62 31 30 20 20 20 20 16 15 15 14 13 13 7 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGCTCTACCCAAAATTTCA</pcr_primer_p1>
		<pcr_primer_p2>AAACCACCAGAAAACAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>GAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGYCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30975</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>179126</contig_pos>
        <strand>+</strand>
        <context>TTATAAATTC[C/T]AATGTAATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTC</left_flank>
        <right_flank>AATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCAC</right_flank>
        <qual_score>130</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGTCCACTAAAAAGTGTCTATTTTCAGAATACGTCGCTCGATACGCCACCGAAAAGACGCCAGCAGACGCGCCAGCCACCAAAAAAGCGCAAGAGCCGGAAACTTTGGCCACGTGGCACGACTCGACGAGTCCCGACGACGATGATAACATATCATTGAGCAGTCTCTCAGAAATCGATCCAGATGACGTAGCGAGTTTCGAGGAGTTCGAGAAGGAGTACGATGCGAGAATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTGATTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCGACCTCAAAAAAGACGCCCCCACACAGCCCATTCATTCTGTTCATTCTGTTCATTCACACAAAACCCCCGATTTTCCCAAATTTTCAGGACACATTTTCCCGGCAATTTTGAATATTAAAATTTCAAAATTCATATCGTTTATTCGATTTTTCTCCGATTTTCTTT</canonical>
            <polymorphic>AATGTCCACTAAAAAGTGTCTATTTTCAGAATACGTCGCTCGATACGCCACCGAAAAGACGCCAGCAGACGCGCCAGCCACCAAAAAAGCGCAAGAGCCGGAAACTTTGGCCACGTGGCACGACTCGACGAGTCCCGACGACGATGATAACATATCATTGAGCAGTCTCTCAGAAATCGATCCAGATGACGTAGCGAGTTTCGAGGAGTTCGAGAAGGAGTACGATGCGAGAATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTGATTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCYAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCGACCTCAAAAAAGACGCCCCCACACAGCCCATTCATTCTGTTCATTCTGTTCATTCACACAAAACCCCCGATTTTCCCAAATTTTCAGGACACATTTTCCCGGCAATTTTGAATATTAAAATTTCAAAATTCATATCGTTTATTCGATTTTTCTCCGATTTTCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTCTAGAAACCACGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAACCACCAGAAAACAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>CAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTT</canonical_amplicon>
		<polymorphic_amplicon>CAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCYAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30976</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>179143</contig_pos>
        <strand></strand>
        <context>ATTTGCtgga[A/T]gawwtttggc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGA</left_flank>
        <right_flank>GAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGC</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTATTTTCAGAATACGTCGCTCGATACGCCACCGAAAAGACGCCAGCAGACGCGCCAGCCACCAAAAAAGCGCAAGAGCCGGAAACTTTGGCCACGTGGCACGACTCGACGAGTCCCGACGACGATGATAACATATCATTGAGCAGTCTCTCAGAAATCGATCCAGATGACGTAGCGAGTTTCGAGGAGTTCGAGAAGGAGTACGATGCGAGAATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTGATTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCGACCTCAAAAAAGACGCCCCCACACAGCCCATTCATTCTGTTCATTCTGTTCATTCACACAAAACCCCCGATTTTCCCAAATTTTCAGGACACATTTTCCCGGCAATTTTGAATATTAAAATTTCAAAATTCATATCGTTTATTCGATTTTTCTCCGATTTTCTTTCTTTCTTCAAATCCCGA</canonical>
            <polymorphic>GTCTATTTTCAGAATACGTCGCTCGATACGCCACCGAAAAGACGCCAGCAGACGCGCCAGCCACCAAAAAAGCGCAAGAGCCGGAAACTTTGGCCACGTGGCACGACTCGACGAGTCCCGACGACGATGATAACATATCATTGAGCAGTCTCTCAGAAATCGATCCAGATGACGTAGCGAGTTTCGAGGAGTTCGAGAAGGAGTACGATGCGAGAATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTGATTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAWGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCGACCTCAAAAAAGACGCCCCCACACAGCCCATTCATTCTGTTCATTCTGTTCATTCACACAAAACCCCCGATTTTCCCAAATTTTCAGGACACATTTTCCCGGCAATTTTGAATATTAAAATTTCAAAATTCATATCGTTTATTCGATTTTTCTCCGATTTTCTTTCTTTCTTCAAATCCCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTCTAGAAACCACGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAACCACCAGAAAACAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>CAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTT</canonical_amplicon>
		<polymorphic_amplicon>CAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAWGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30977</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>179146</contig_pos>
        <strand></strand>
        <context>TGCtggawga[A/T]wtttggccta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGA</left_flank>
        <right_flank>ATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTTCAGAATACGTCGCTCGATACGCCACCGAAAAGACGCCAGCAGACGCGCCAGCCACCAAAAAAGCGCAAGAGCCGGAAACTTTGGCCACGTGGCACGACTCGACGAGTCCCGACGACGATGATAACATATCATTGAGCAGTCTCTCAGAAATCGATCCAGATGACGTAGCGAGTTTCGAGGAGTTCGAGAAGGAGTACGATGCGAGAATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTGATTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCGACCTCAAAAAAGACGCCCCCACACAGCCCATTCATTCTGTTCATTCTGTTCATTCACACAAAACCCCCGATTTTCCCAAATTTTCAGGACACATTTTCCCGGCAATTTTGAATATTAAAATTTCAAAATTCATATCGTTTATTCGATTTTTCTCCGATTTTCTTTCTTTCTTCAAATCCCGATTT</canonical>
            <polymorphic>TATTTTCAGAATACGTCGCTCGATACGCCACCGAAAAGACGCCAGCAGACGCGCCAGCCACCAAAAAAGCGCAAGAGCCGGAAACTTTGGCCACGTGGCACGACTCGACGAGTCCCGACGACGATGATAACATATCATTGAGCAGTCTCTCAGAAATCGATCCAGATGACGTAGCGAGTTTCGAGGAGTTCGAGAAGGAGTACGATGCGAGAATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTGATTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAWATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCGACCTCAAAAAAGACGCCCCCACACAGCCCATTCATTCTGTTCATTCTGTTCATTCACACAAAACCCCCGATTTTCCCAAATTTTCAGGACACATTTTCCCGGCAATTTTGAATATTAAAATTTCAAAATTCATATCGTTTATTCGATTTTTCTCCGATTTTCTTTCTTTCTTCAAATCCCGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>249 246 145 121 69 59 40 29 25 9 8</canonical_bands>
                <polymorphic_bands>274 246 145 121 69 59 40 29 9 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>246 145 121 97 76 76 62 59 25 16 15 14 13 11 9 8 7</canonical_bands>
                <polymorphic_bands>246 145 121 111 76 76 62 59 25 16 15 13 11 9 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTCTAGAAACCACGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAACCACCAGAAAACAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>CAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTT</canonical_amplicon>
		<polymorphic_amplicon>CAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAWATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30978</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>179147</contig_pos>
        <strand></strand>
        <context>GCtggawgaw[A/T]tttggcctag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAA</left_flank>
        <right_flank>TTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTCAGAATACGTCGCTCGATACGCCACCGAAAAGACGCCAGCAGACGCGCCAGCCACCAAAAAAGCGCAAGAGCCGGAAACTTTGGCCACGTGGCACGACTCGACGAGTCCCGACGACGATGATAACATATCATTGAGCAGTCTCTCAGAAATCGATCCAGATGACGTAGCGAGTTTCGAGGAGTTCGAGAAGGAGTACGATGCGAGAATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTGATTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCGACCTCAAAAAAGACGCCCCCACACAGCCCATTCATTCTGTTCATTCTGTTCATTCACACAAAACCCCCGATTTTCCCAAATTTTCAGGACACATTTTCCCGGCAATTTTGAATATTAAAATTTCAAAATTCATATCGTTTATTCGATTTTTCTCCGATTTTCTTTCTTTCTTCAAATCCCGATTTT</canonical>
            <polymorphic>ATTTTCAGAATACGTCGCTCGATACGCCACCGAAAAGACGCCAGCAGACGCGCCAGCCACCAAAAAAGCGCAAGAGCCGGAAACTTTGGCCACGTGGCACGACTCGACGAGTCCCGACGACGATGATAACATATCATTGAGCAGTCTCTCAGAAATCGATCCAGATGACGTAGCGAGTTTCGAGGAGTTCGAGAAGGAGTACGATGCGAGAATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTGATTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAWTTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCGACCTCAAAAAAGACGCCCCCACACAGCCCATTCATTCTGTTCATTCTGTTCATTCACACAAAACCCCCGATTTTCCCAAATTTTCAGGACACATTTTCCCGGCAATTTTGAATATTAAAATTTCAAAATTCATATCGTTTATTCGATTTTTCTCCGATTTTCTTTCTTTCTTCAAATCCCGATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>249 245 145 121 69 60 40 29 25 9 8</canonical_bands>
                <polymorphic_bands>274 245 145 121 69 60 40 29 9 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>245 145 121 97 76 76 62 60 25 16 15 14 13 11 9 8 7</canonical_bands>
                <polymorphic_bands>245 145 121 111 76 76 62 60 25 16 15 13 11 9 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTCTAGAAACCACGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAACCACCAGAAAACAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>CAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTT</canonical_amplicon>
		<polymorphic_amplicon>CAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAWTTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30979</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>179167</contig_pos>
        <strand></strand>
        <context>gttttggttt[T/C]ctaggccacc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTT</left_flank>
        <right_flank>CTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATACGCCACCGAAAAGACGCCAGCAGACGCGCCAGCCACCAAAAAAGCGCAAGAGCCGGAAACTTTGGCCACGTGGCACGACTCGACGAGTCCCGACGACGATGATAACATATCATTGAGCAGTCTCTCAGAAATCGATCCAGATGACGTAGCGAGTTTCGAGGAGTTCGAGAAGGAGTACGATGCGAGAATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTGATTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCGACCTCAAAAAAGACGCCCCCACACAGCCCATTCATTCTGTTCATTCTGTTCATTCACACAAAACCCCCGATTTTCCCAAATTTTCAGGACACATTTTCCCGGCAATTTTGAATATTAAAATTTCAAAATTCATATCGTTTATTCGATTTTTCTCCGATTTTCTTTCTTTCTTCAAATCCCGATTTTTTGAATTCTCTGTCTATAAA</canonical>
            <polymorphic>GATACGCCACCGAAAAGACGCCAGCAGACGCGCCAGCCACCAAAAAAGCGCAAGAGCCGGAAACTTTGGCCACGTGGCACGACTCGACGAGTCCCGACGACGATGATAACATATCATTGAGCAGTCTCTCAGAAATCGATCCAGATGACGTAGCGAGTTTCGAGGAGTTCGAGAAGGAGTACGATGCGAGAATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTGATTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTYCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCGACCTCAAAAAAGACGCCCCCACACAGCCCATTCATTCTGTTCATTCTGTTCATTCACACAAAACCCCCGATTTTCCCAAATTTTCAGGACACATTTTCCCGGCAATTTTGAATATTAAAATTTCAAAATTCATATCGTTTATTCGATTTTTCTCCGATTTTCTTTCTTTCTTCAAATCCCGATTTTTTGAATTCTCTGTCTATAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTCTAGAAACCACGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAACCACCAGAAAACAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>CAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTT</canonical_amplicon>
		<polymorphic_amplicon>CAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTYCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30980</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>179319</contig_pos>
        <strand></strand>
        <context>aatcccgaaa[A/T]wttggttttc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAA</left_flank>
        <right_flank>ATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAAT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGAGTTTCGAGGAGTTCGAGAAGGAGTACGATGCGAGAATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTGATTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCGACCTCAAAAAAGACGCCCCCACACAGCCCATTCATTCTGTTCATTCTGTTCATTCACACAAAACCCCCGATTTTCCCAAATTTTCAGGACACATTTTCCCGGCAATTTTGAATATTAAAATTTCAAAATTCATATCGTTTATTCGATTTTTCTCCGATTTTCTTTCTTTCTTCAAATCCCGATTTTTTGAATTCTCTGTCTATAAATGTAGAAAAACCCCGCTTTTCTTTGTATGTTTCTGTAAAAAACCCGATTTTTTCGCTTTTTTCGCATTTTCCACTAGTTTTTGTACATAATAAAGGCTTTTTTCCATGCATCTGAAAATCTTTAAAAAACCTGAAAAATGATTTATTTACAC</canonical>
            <polymorphic>GCGAGTTTCGAGGAGTTCGAGAAGGAGTACGATGCGAGAATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTGATTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAWATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCGACCTCAAAAAAGACGCCCCCACACAGCCCATTCATTCTGTTCATTCTGTTCATTCACACAAAACCCCCGATTTTCCCAAATTTTCAGGACACATTTTCCCGGCAATTTTGAATATTAAAATTTCAAAATTCATATCGTTTATTCGATTTTTCTCCGATTTTCTTTCTTTCTTCAAATCCCGATTTTTTGAATTCTCTGTCTATAAATGTAGAAAAACCCCGCTTTTCTTTGTATGTTTCTGTAAAAAACCCGATTTTTTCGCTTTTTTCGCATTTTCCACTAGTTTTTGTACATAATAAAGGCTTTTTTCCATGCATCTGAAAATCTTTAAAAAACCTGAAAAATGATTTATTTACAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>169 145 121 97 76 76 73 63 62 25 16 15 14 13 11 9 8 7</canonical_bands>
                <polymorphic_bands>169 152 145 121 97 73 63 62 25 16 15 14 13 11 9 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGGTTTTTCTCGAGATTTGT</pcr_primer_p1>
		<pcr_primer_p2>CGAAAATGGGTAGTTTAGAGATT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCG</canonical_amplicon>
		<polymorphic_amplicon>GTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAWATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30981</snp_id>
        <super_contig>c005701524.Contig1</super_contig>
        <contig_pos>179320</contig_pos>
        <strand></strand>
        <context>atcccgaaaw[A/T]ttggttttct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAA</left_flank>
        <right_flank>TTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATC</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAGTTTCGAGGAGTTCGAGAAGGAGTACGATGCGAGAATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTGATTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCGACCTCAAAAAAGACGCCCCCACACAGCCCATTCATTCTGTTCATTCTGTTCATTCACACAAAACCCCCGATTTTCCCAAATTTTCAGGACACATTTTCCCGGCAATTTTGAATATTAAAATTTCAAAATTCATATCGTTTATTCGATTTTTCTCCGATTTTCTTTCTTTCTTCAAATCCCGATTTTTTGAATTCTCTGTCTATAAATGTAGAAAAACCCCGCTTTTCTTTGTATGTTTCTGTAAAAAACCCGATTTTTTCGCTTTTTTCGCATTTTCCACTAGTTTTTGTACATAATAAAGGCTTTTTTCCATGCATCTGAAAATCTTTAAAAAACCTGAAAAATGATTTATTTACACA</canonical>
            <polymorphic>CGAGTTTCGAGGAGTTCGAGAAGGAGTACGATGCGAGAATGGCCGCCGAGAGGATGAATCAAAAATCATAGAAATTCCTAATTTTCTGATTTTATTGTAAAAATCTAGACGTTCTAGGTGCCAGAATCGAGCTCTACCCAAAATTTCAGTCTAGAAACCACGAAAAAATACTCGAAAAGCCTAGTTTTTGGGGTATTTGGGTTTCTAGGCCACCAAAACTCGGCCAGCATGGTTTCAGCCGTTTTCAGCGGTTTCTAGGGGAAATTTCTAGAATTTTTTGCTGTAATTTAGTGTATTATAAATTCCAATGTAATTTGCTGGAAGAAATTTGGCCTAGTTTTGGTTTTCTAGGCCACCATTTGGGTTTCTAGGCCAGCAGCCGAAAATCCTGTTTTCTGGTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAWTTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCGACCTCAAAAAAGACGCCCCCACACAGCCCATTCATTCTGTTCATTCTGTTCATTCACACAAAACCCCCGATTTTCCCAAATTTTCAGGACACATTTTCCCGGCAATTTTGAATATTAAAATTTCAAAATTCATATCGTTTATTCGATTTTTCTCCGATTTTCTTTCTTTCTTCAAATCCCGATTTTTTGAATTCTCTGTCTATAAATGTAGAAAAACCCCGCTTTTCTTTGTATGTTTCTGTAAAAAACCCGATTTTTTCGCTTTTTTCGCATTTTCCACTAGTTTTTGTACATAATAAAGGCTTTTTTCCATGCATCTGAAAATCTTTAAAAAACCTGAAAAATGATTTATTTACACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>170 145 121 97 76 76 72 63 62 25 16 15 14 13 11 9 8 7</canonical_bands>
                <polymorphic_bands>170 152 145 121 97 72 63 62 25 16 15 14 13 11 9 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGGTTTTTCTCGAGATTTGT</pcr_primer_p1>
		<pcr_primer_p2>CGAAAATGGGTAGTTTAGAGATT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAATTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCG</canonical_amplicon>
		<polymorphic_amplicon>GTGGTTTTTCTCGAGATTTGTTGCAATTTTATGAAGCAGTAGGCTCCGCTAGATTTGAGCCTACCTCTTGGTGGCCGGCCATGGCCTAGAAATCCCGAAAAWTTGGTTTTCTAGGCCACCAGTTGGAAAACTCGGCCAGGACCCGAAAAATCCCAAAAACCTCGGTTCTAGACTGAAATTTCGCGTAGATCTCGATTCTGCCATTCATTTCCACCCATCTAATCTCTAAACTACCCATTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30982</snp_id>
        <super_contig>c005701729.Contig1</super_contig>
        <contig_pos>42671</contig_pos>
        <strand>+</strand>
        <context>CTGATCTGAT[G/T]TGATCATCGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCCCGTTTCTGATTTTGCTCTTGTTGCCATTTTTTGCATTCTGATCTGAT</left_flank>
        <right_flank>TGATCATCGGAAACCAACGGGTCCAGTGAAAAGCGCTGAAAAACATAGTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCAATCGTTGCTGTGCTTTCTCTTTCCGGTGAGATTTTTCCGGCCTTCTCAACACTCTTGATGATTCAATTTCAGGTTTTTTGAGTGTAACTATCGTGCGAACTGTACGTCGGGACATCGCTCAGTATAATCGGGATGACGAAGAAGACGAAACCTTGGAAGAAACTGGGTGGAAGCTGGTGCACGGAGATGTTTTCNNNNNNNNNNCAAAACGGGACAATTTCACTTTAGACATTTCTGTTCCGTCCAATTTATACTTCCGGACAGTTCTGGTTTCGCACAGTTTTCAATTTGGAACCATTTTGATTTAGGAAATGTTCATTTTGCTACAGTTTCATTTTAGGAAATCTCCAATCCGTCGTACCACCGGATGCGGAGATGAATCACGATTGGAATGTAGCACATCCTCGTTTAGCGGCAATCATGCTGAAGTCTTTTTCAGAGCTCTCCCGTTTCTGATTTTGCTCTTGTTGCCATTTTTTGCATTCTGATCTGATGTGATCATCGGAAACCAACGGGTCCAGTGAAAAGCGCTGAAAAACATAGTTTTCGTATTCGAAAAGACATTTTGTAAATATTCACATGGATCAGATAATTCCTCCAGAGAGCCCATTTGAACGGTTCAACCGTCGATGATTTATTAATAACACGTGCTTCTGCACGAAGGACGTCTACAATAAACGTCATCGTTAACTCAACCTGAAAAAGAGACATGAAGGCTTCGAATACTCATATTTTCTCACCCAATCGATTTTTGTGAGATGAGCAGCACCGGTGAGCTCATCAAACAACTCTCCACTCCAAACGTGTTGCCAGAAAGAATTACTTTTTTTAGACGCTGTTGATCTTTCAGTTTGTGAGGAGTCTGATATGGAATATTCGATTATTGGATTTCCTTCGAAGAAACTGGAAATTATTCATTTAATGAATTGGGCCTTGAAACAAATTTGAAATTTTACCTGTAAACCTTTTTAGAATCAAAGATTCGGTCTCTCATC</canonical>
            <polymorphic>ACTCAATCGTTGCTGTGCTTTCTCTTTCCGGTGAGATTTTTCCGGCCTTCTCAACACTCTTGATGATTCAATTTCAGGTTTTTTGAGTGTAACTATCGTGCGAACTGTACGTCGGGACATCGCTCAGTATAATCGGGATGACGAAGAAGACGAAACCTTGGAAGAAACTGGGTGGAAGCTGGTGCACGGAGATGTTTTCNNNNNNNNNNCAAAACGGGACAATTTCACTTTAGACATTTCTGTTCCGTCCAATTTATACTTCCGGACAGTTCTGGTTTCGCACAGTTTTCAATTTGGAACCATTTTGATTTAGGAAATGTTCATTTTGCTACAGTTTCATTTTAGGAAATCTCCAATCCGTCGTACCACCGGATGCGGAGATGAATCACGATTGGAATGTAGCACATCCTCGTTTAGCGGCAATCATGCTGAAGTCTTTTTCAGAGCTCTCCCGTTTCTGATTTTGCTCTTGTTGCCATTTTTTGCATTCTGATCTGATKTGATCATCGGAAACCAACGGGTCCAGTGAAAAGCGCTGAAAAACATAGTTTTCGTATTCGAAAAGACATTTTGTAAATATTCACATGGATCAGATAATTCCTCCAGAGAGCCCATTTGAACGGTTCAACCGTCGATGATTTATTAATAACACGTGCTTCTGCACGAAGGACGTCTACAATAAACGTCATCGTTAACTCAACCTGAAAAAGAGACATGAAGGCTTCGAATACTCATATTTTCTCACCCAATCGATTTTTGTGAGATGAGCAGCACCGGTGAGCTCATCAAACAACTCTCCACTCCAAACGTGTTGCCAGAAAGAATTACTTTTTTTAGACGCTGTTGATCTTTCAGTTTGTGAGGAGTCTGATATGGAATATTCGATTATTGGATTTCCTTCGAAGAAACTGGAAATTATTCATTTAATGAATTGGGCCTTGAAACAAATTTGAAATTTTACCTGTAAACCTTTTTAGAATCAAAGATTCGGTCTCTCATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>139 98 86 81 74 68 55 55 50 41 33 26 23 21 20 17 17 16 16 12 11 11 10 8 6 4 2</canonical_bands>
                <polymorphic_bands>139 124 86 81 74 68 55 55 50 41 33 23 21 20 17 17 16 16 12 11 11 10 8 6 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATCATGCTGAAGTCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGCAGAAGCACGTGTTATTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CAATCATGCTGAAGTCTTTTTCAGAGCTCTCCCGTTTCTGATTTTGCTCTTGTTGCCATTTTTTGCATTCTGATCTGATGTGATCATCGGAAACCAACGGGTCCAGTGAAAAGCGCTGAAAAACATAGTTTTCGTATTCGAAAAGACATTTTGTAAATATTCACATGGATCAGATAATTCCTCCAGAGAGCCCATTTGAACGGTTCAACCGTCGATGATTTATTAATAACACGTGCTTCTGCA</canonical_amplicon>
		<polymorphic_amplicon>CAATCATGCTGAAGTCTTTTTCAGAGCTCTCCCGTTTCTGATTTTGCTCTTGTTGCCATTTTTTGCATTCTGATCTGATKTGATCATCGGAAACCAACGGGTCCAGTGAAAAGCGCTGAAAAACATAGTTTTCGTATTCGAAAAGACATTTTGTAAATATTCACATGGATCAGATAATTCCTCCAGAGAGCCCATTTGAACGGTTCAACCGTCGATGATTTATTAATAACACGTGCTTCTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30983</snp_id>
        <super_contig>c005701729.Contig1</super_contig>
        <contig_pos>42840</contig_pos>
        <strand>+</strand>
        <context>CTGCACGAAG[A/G]ACGTCTACAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACGGTTCAACCGTCGATGATTTATTAATAACACGTGCTTCTGCACGAAG</left_flank>
        <right_flank>ACGTCTACAATAAACGTCATCGTTAACTCAACCTGAAAAAGAGACATGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGTGGAAGCTGGTGCACGGAGATGTTTTCNNNNNNNNNNCAAAACGGGACAATTTCACTTTAGACATTTCTGTTCCGTCCAATTTATACTTCCGGACAGTTCTGGTTTCGCACAGTTTTCAATTTGGAACCATTTTGATTTAGGAAATGTTCATTTTGCTACAGTTTCATTTTAGGAAATCTCCAATCCGTCGTACCACCGGATGCGGAGATGAATCACGATTGGAATGTAGCACATCCTCGTTTAGCGGCAATCATGCTGAAGTCTTTTTCAGAGCTCTCCCGTTTCTGATTTTGCTCTTGTTGCCATTTTTTGCATTCTGATCTGATGTGATCATCGGAAACCAACGGGTCCAGTGAAAAGCGCTGAAAAACATAGTTTTCGTATTCGAAAAGACATTTTGTAAATATTCACATGGATCAGATAATTCCTCCAGAGAGCCCATTTGAACGGTTCAACCGTCGATGATTTATTAATAACACGTGCTTCTGCACGAAGGACGTCTACAATAAACGTCATCGTTAACTCAACCTGAAAAAGAGACATGAAGGCTTCGAATACTCATATTTTCTCACCCAATCGATTTTTGTGAGATGAGCAGCACCGGTGAGCTCATCAAACAACTCTCCACTCCAAACGTGTTGCCAGAAAGAATTACTTTTTTTAGACGCTGTTGATCTTTCAGTTTGTGAGGAGTCTGATATGGAATATTCGATTATTGGATTTCCTTCGAAGAAACTGGAAATTATTCATTTAATGAATTGGGCCTTGAAACAAATTTGAAATTTTACCTGTAAACCTTTTTAGAATCAAAGATTCGGTCTCTCATCAGACTTCCAACAGAAGTGGTTTCTCGAAACGATCCAGGACGAGTCGCTGTTATCTGAACAAAAAATAAATTATGGATTTCTAGATAGTGAAATTACCTGTTTCTCCCCGATTTTTCTTGAACATCCTAGCAGAATCACACAGACAAGCATCATAAACAGAGATGACCAG</canonical>
            <polymorphic>GGGTGGAAGCTGGTGCACGGAGATGTTTTCNNNNNNNNNNCAAAACGGGACAATTTCACTTTAGACATTTCTGTTCCGTCCAATTTATACTTCCGGACAGTTCTGGTTTCGCACAGTTTTCAATTTGGAACCATTTTGATTTAGGAAATGTTCATTTTGCTACAGTTTCATTTTAGGAAATCTCCAATCCGTCGTACCACCGGATGCGGAGATGAATCACGATTGGAATGTAGCACATCCTCGTTTAGCGGCAATCATGCTGAAGTCTTTTTCAGAGCTCTCCCGTTTCTGATTTTGCTCTTGTTGCCATTTTTTGCATTCTGATCTGATGTGATCATCGGAAACCAACGGGTCCAGTGAAAAGCGCTGAAAAACATAGTTTTCGTATTCGAAAAGACATTTTGTAAATATTCACATGGATCAGATAATTCCTCCAGAGAGCCCATTTGAACGGTTCAACCGTCGATGATTTATTAATAACACGTGCTTCTGCACGAAGRACGTCTACAATAAACGTCATCGTTAACTCAACCTGAAAAAGAGACATGAAGGCTTCGAATACTCATATTTTCTCACCCAATCGATTTTTGTGAGATGAGCAGCACCGGTGAGCTCATCAAACAACTCTCCACTCCAAACGTGTTGCCAGAAAGAATTACTTTTTTTAGACGCTGTTGATCTTTCAGTTTGTGAGGAGTCTGATATGGAATATTCGATTATTGGATTTCCTTCGAAGAAACTGGAAATTATTCATTTAATGAATTGGGCCTTGAAACAAATTTGAAATTTTACCTGTAAACCTTTTTAGAATCAAAGATTCGGTCTCTCATCAGACTTCCAACAGAAGTGGTTTCTCGAAACGATCCAGGACGAGTCGCTGTTATCTGAACAAAAAATAAATTATGGATTTCTAGATAGTGAAATTACCTGTTTCTCCCCGATTTTTCTTGAACATCCTAGCAGAATCACACAGACAAGCATCATAAACAGAGATGACCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACGTC</site>
                <isoschizomers>
                    <enzyme>AatII</enzyme>
                    <enzyme>ZraI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACATGGATCAGATAATTCCTC</pcr_primer_p1>
		<pcr_primer_p2>AAGTAATTCTTTCTGGCAACAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CACATGGATCAGATAATTCCTCCAGAGAGCCCATTTGAACGGTTCAACCGTCGATGATTTATTAATAACACGTGCTTCTGCACGAAGGACGTCTACAATAAACGTCATCGTTAACTCAACCTGAAAAAGAGACATGAAGGCTTCGAATACTCATATTTTCTCACCCAATCGATTTTTGTGAGATGAGCAGCACCGGTGAGCTCATCAAACAACTCTCCACTCCAAACGTGTTGCCAGAAAGAATTACTT</canonical_amplicon>
		<polymorphic_amplicon>CACATGGATCAGATAATTCCTCCAGAGAGCCCATTTGAACGGTTCAACCGTCGATGATTTATTAATAACACGTGCTTCTGCACGAAGRACGTCTACAATAAACGTCATCGTTAACTCAACCTGAAAAAGAGACATGAAGGCTTCGAATACTCATATTTTCTCACCCAATCGATTTTTGTGAGATGAGCAGCACCGGTGAGCTCATCAAACAACTCTCCACTCCAAACGTGTTGCCAGAAAGAATTACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30984</snp_id>
        <super_contig>c005701729.Contig1</super_contig>
        <contig_pos>43097</contig_pos>
        <strand>+</strand>
        <context>TTATTCATTT[A/G]ATGAATTGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATATTCGATTATTGGATTTCCTTCGAAGAAACTGGAAATTATTCATTT</left_flank>
        <right_flank>ATGAATTGGGCCTTGAAACAAATTTGAAATTTTACCTGTAAACCTTTTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCTGAAGTCTTTTTCAGAGCTCTCCCGTTTCTGATTTTGCTCTTGTTGCCATTTTTTGCATTCTGATCTGATGTGATCATCGGAAACCAACGGGTCCAGTGAAAAGCGCTGAAAAACATAGTTTTCGTATTCGAAAAGACATTTTGTAAATATTCACATGGATCAGATAATTCCTCCAGAGAGCCCATTTGAACGGTTCAACCGTCGATGATTTATTAATAACACGTGCTTCTGCACGAAGGACGTCTACAATAAACGTCATCGTTAACTCAACCTGAAAAAGAGACATGAAGGCTTCGAATACTCATATTTTCTCACCCAATCGATTTTTGTGAGATGAGCAGCACCGGTGAGCTCATCAAACAACTCTCCACTCCAAACGTGTTGCCAGAAAGAATTACTTTTTTTAGACGCTGTTGATCTTTCAGTTTGTGAGGAGTCTGATATGGAATATTCGATTATTGGATTTCCTTCGAAGAAACTGGAAATTATTCATTTAATGAATTGGGCCTTGAAACAAATTTGAAATTTTACCTGTAAACCTTTTTAGAATCAAAGATTCGGTCTCTCATCAGACTTCCAACAGAAGTGGTTTCTCGAAACGATCCAGGACGAGTCGCTGTTATCTGAACAAAAAATAAATTATGGATTTCTAGATAGTGAAATTACCTGTTTCTCCCCGATTTTTCTTGAACATCCTAGCAGAATCACACAGACAAGCATCATAAACAGAGATGACCAGAACTGAAAAAAGCGAAAGGAATTATTTGAAATTCAAAATTTTTGGTTAGGACCAAAAAGTGTCTCCATGTGTGTCGACTTCTTTTGTTTTTAGCCGTTCGATTTCCAACTAGCGTGGAGACGATTGAAGCAATGAAGATAGAACGGAATACTGCACTTTGGAAAACGCGGACCTGTAGAATTGTAGTCTATTAAAACAAATTAGATAACGATTTACCATAAGGAACATTGATGAAAAACTAGAAATCCAGATGAAGC</canonical>
            <polymorphic>TGCTGAAGTCTTTTTCAGAGCTCTCCCGTTTCTGATTTTGCTCTTGTTGCCATTTTTTGCATTCTGATCTGATGTGATCATCGGAAACCAACGGGTCCAGTGAAAAGCGCTGAAAAACATAGTTTTCGTATTCGAAAAGACATTTTGTAAATATTCACATGGATCAGATAATTCCTCCAGAGAGCCCATTTGAACGGTTCAACCGTCGATGATTTATTAATAACACGTGCTTCTGCACGAAGGACGTCTACAATAAACGTCATCGTTAACTCAACCTGAAAAAGAGACATGAAGGCTTCGAATACTCATATTTTCTCACCCAATCGATTTTTGTGAGATGAGCAGCACCGGTGAGCTCATCAAACAACTCTCCACTCCAAACGTGTTGCCAGAAAGAATTACTTTTTTTAGACGCTGTTGATCTTTCAGTTTGTGAGGAGTCTGATATGGAATATTCGATTATTGGATTTCCTTCGAAGAAACTGGAAATTATTCATTTRATGAATTGGGCCTTGAAACAAATTTGAAATTTTACCTGTAAACCTTTTTAGAATCAAAGATTCGGTCTCTCATCAGACTTCCAACAGAAGTGGTTTCTCGAAACGATCCAGGACGAGTCGCTGTTATCTGAACAAAAAATAAATTATGGATTTCTAGATAGTGAAATTACCTGTTTCTCCCCGATTTTTCTTGAACATCCTAGCAGAATCACACAGACAAGCATCATAAACAGAGATGACCAGAACTGAAAAAAGCGAAAGGAATTATTTGAAATTCAAAATTTTTGGTTAGGACCAAAAAGTGTCTCCATGTGTGTCGACTTCTTTTGTTTTTAGCCGTTCGATTTCCAACTAGCGTGGAGACGATTGAAGCAATGAAGATAGAACGGAATACTGCACTTTGGAAAACGCGGACCTGTAGAATTGTAGTCTATTAAAACAAATTAGATAACGATTTACCATAAGGAACATTGATGAAAAACTAGAAATCCAGATGAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>436 232 217 66 49</canonical_bands>
                <polymorphic_bands>668 217 66 49</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGAGGAGTCTGATATGGAATA</pcr_primer_p1>
		<pcr_primer_p2>GGGAGAAACAGGTAATTTCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTGAGGAGTCTGATATGGAATATTCGATTATTGGATTTCCTTCGAAGAAACTGGAAATTATTCATTTAATGAATTGGGCCTTGAAACAAATTTGAAATTTTACCTGTAAACCTTTTTAGAATCAAAGATTCGGTCTCTCATCAGACTTCCAACAGAAGTGGTTTCTCGAAACGATCCAGGACGAGTCGCTGTTATCTGAACAAAAAATAAATTATGGATTTCTAGATAGTGAAATTACCTGTTTCTCCC</canonical_amplicon>
		<polymorphic_amplicon>TGTGAGGAGTCTGATATGGAATATTCGATTATTGGATTTCCTTCGAAGAAACTGGAAATTATTCATTTRATGAATTGGGCCTTGAAACAAATTTGAAATTTTACCTGTAAACCTTTTTAGAATCAAAGATTCGGTCTCTCATCAGACTTCCAACAGAAGTGGTTTCTCGAAACGATCCAGGACGAGTCGCTGTTATCTGAACAAAAAATAAATTATGGATTTCTAGATAGTGAAATTACCTGTTTCTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30985</snp_id>
        <super_contig>c005701729.Contig1</super_contig>
        <contig_pos>85206</contig_pos>
        <strand>+</strand>
        <context>TGTTTTCAAA[A/G]AGTTTGGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGTTTTCAGTGAAATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAA</left_flank>
        <right_flank>AGTTTGGAATTTTATTGTATTTTTTAACTTTATTTTTCAGTAATTTCTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCAATATCGATTGATTTCCCACAACTCACATCATTCAGAATACAGCTTTTCAGCGCTGTATAGCTGGATTTCAGAATTTCAGCCAAGTTTCTGAAAAAATATTTTTTTTTCAATTTTTTGATTTTCTCACTTTTTACAAGTACTTTCATTGCAATTTTCGATAGAAATTCTGTTGAAAAGTGCCTTAAAATCCGTATAAGAGATCAAATCTGGTCCATATTTCCGGCAAATCGTCTGATAAGAGTTTTCAGGCGATTTCCAGTGGAAAGTGTCATATAATATGCAAGTTTCAATGAAAAAATCGAAATTTTCGGTCATTTTTTACCTGAAAATGGCGAAAAAATCATGAAAATTGATGGAAAATGAAGGAAAATCGGCGAAAAATGAAAAAAAAAACAAAATTTTCTACAGTAACCCAAACTAATATTTTTATAATGATGTTTTTTGTCGTTTTCAGTGAAATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAAAAGTTTGGAATTTTATTGTATTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATTAAAAAAAACGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGCAGCCCAATTTTCAAATTGCCGCCGCTCCGCCGAAACCAAAAAATCAGAAAAAGCGTCAGCAACGAGTGCCAGATGAGATTCGAAAACTTCAGGCGTCGACACAGCTGATTTTTCCAAAATCCAGATTTCGAAAAATCGT</canonical>
            <polymorphic>GAGCAATATCGATTGATTTCCCACAACTCACATCATTCAGAATACAGCTTTTCAGCGCTGTATAGCTGGATTTCAGAATTTCAGCCAAGTTTCTGAAAAAATATTTTTTTTTCAATTTTTTGATTTTCTCACTTTTTACAAGTACTTTCATTGCAATTTTCGATAGAAATTCTGTTGAAAAGTGCCTTAAAATCCGTATAAGAGATCAAATCTGGTCCATATTTCCGGCAAATCGTCTGATAAGAGTTTTCAGGCGATTTCCAGTGGAAAGTGTCATATAATATGCAAGTTTCAATGAAAAAATCGAAATTTTCGGTCATTTTTTACCTGAAAATGGCGAAAAAATCATGAAAATTGATGGAAAATGAAGGAAAATCGGCGAAAAATGAAAAAAAAAACAAAATTTTCTACAGTAACCCAAACTAATATTTTTATAATGATGTTTTTTGTCGTTTTCAGTGAAATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAARAGTTTGGAATTTTATTGTATTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATTAAAAAAAACGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGCAGCCCAATTTTCAAATTGCCGCCGCTCCGCCGAAACCAAAAAATCAGAAAAAGCGTCAGCAACGAGTGCCAGATGAGATTCGAAAACTTCAGGCGTCGACACAGCTGATTTTTCCAAAATCCAGATTTCGAAAAATCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTTTCTACAGTAACCCAAAC</pcr_primer_p1>
		<pcr_primer_p2>CGCAGAGCTTAAAGTTGTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAATTTTCTACAGTAACCCAAACTAATATTTTTATAATGATGTTTTTTGTCGTTTTCAGTGAAATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAAAAGTTTGGAATTTTATTGTATTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATTAAAAAAAACGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCG</canonical_amplicon>
		<polymorphic_amplicon>AAAATTTTCTACAGTAACCCAAACTAATATTTTTATAATGATGTTTTTTGTCGTTTTCAGTGAAATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAARAGTTTGGAATTTTATTGTATTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATTAAAAAAAACGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30986</snp_id>
        <super_contig>c005701729.Contig1</super_contig>
        <contig_pos>85305</contig_pos>
        <strand>+</strand>
        <context>ATWAAAAAAA[A/T]CGAAGTGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATTAAAAAAA</left_flank>
        <right_flank>CGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCGCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATTTTTTTTTCAATTTTTTGATTTTCTCACTTTTTACAAGTACTTTCATTGCAATTTTCGATAGAAATTCTGTTGAAAAGTGCCTTAAAATCCGTATAAGAGATCAAATCTGGTCCATATTTCCGGCAAATCGTCTGATAAGAGTTTTCAGGCGATTTCCAGTGGAAAGTGTCATATAATATGCAAGTTTCAATGAAAAAATCGAAATTTTCGGTCATTTTTTACCTGAAAATGGCGAAAAAATCATGAAAATTGATGGAAAATGAAGGAAAATCGGCGAAAAATGAAAAAAAAAACAAAATTTTCTACAGTAACCCAAACTAATATTTTTATAATGATGTTTTTTGTCGTTTTCAGTGAAATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAAAAGTTTGGAATTTTATTGTATTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATTAAAAAAAACGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGCAGCCCAATTTTCAAATTGCCGCCGCTCCGCCGAAACCAAAAAATCAGAAAAAGCGTCAGCAACGAGTGCCAGATGAGATTCGAAAACTTCAGGCGTCGACACAGCTGATTTTTCCAAAATCCAGATTTCGAAAAATCGTCAAAGAGCTTCTTCAGGACTATTTGACACCGTTGCAAGTGGCCGATGAGGCTGTTGACGCGCTTCAGGTGAGGATTGGCTTGGCGCGAAATTTGAAATT</canonical>
            <polymorphic>AATATTTTTTTTTCAATTTTTTGATTTTCTCACTTTTTACAAGTACTTTCATTGCAATTTTCGATAGAAATTCTGTTGAAAAGTGCCTTAAAATCCGTATAAGAGATCAAATCTGGTCCATATTTCCGGCAAATCGTCTGATAAGAGTTTTCAGGCGATTTCCAGTGGAAAGTGTCATATAATATGCAAGTTTCAATGAAAAAATCGAAATTTTCGGTCATTTTTTACCTGAAAATGGCGAAAAAATCATGAAAATTGATGGAAAATGAAGGAAAATCGGCGAAAAATGAAAAAAAAAACAAAATTTTCTACAGTAACCCAAACTAATATTTTTATAATGATGTTTTTTGTCGTTTTCAGTGAAATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAAAAGTTTGGAATTTTATTGTATTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATTAAAAAAAWCGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTTCCAGCCATTTTTCGAGTTTTCCAGCTTATTTTTCCCGTATTTTTCATTTTTAATGCTTCAGAATTATGACACAACGTCGGAATCCGCACATATTGCCCAGGAGAAGTTATAATCACAAGCCGCCGGCGGGAAATTCAAATAATAACAATTCGATGCAGCCCAATTTTCAAATTGCCGCCGCTCCGCCGAAACCAAAAAATCAGAAAAAGCGTCAGCAACGAGTGCCAGATGAGATTCGAAAACTTCAGGCGTCGACACAGCTGATTTTTCCAAAATCCAGATTTCGAAAAATCGTCAAAGAGCTTCTTCAGGACTATTTGACACCGTTGCAAGTGGCCGATGAGGCTGTTGACGCGCTTCAGGTGAGGATTGGCTTGGCGCGAAATTTGAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTCAGCTTGTTTTCAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAATGACCAAAAATGACAGAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAAAAGTTTGGAATTTTATTGTATTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATTAAAAAAAACGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTT</canonical_amplicon>
		<polymorphic_amplicon>AAATTTCAGCTTGTTTTCAAATTCAAATTGTTTTCAAAAAGTTTGGAATTTTATTGTATTTTTTAACTTTATTTTTCAGTAATTTCTGCAAAAAAACTAGCAAAAAAAACGCAGAAAATGGCTAAAAATTAAAAAAAWCGAAGTGTTTTCACGGCGAGACTCCATTTACAACTTTAAGCTCTGCGCCTTTAAGAAAAAGCGCCAAGTTCTTTTTTTCAATTTTTCTGTCATTTTTGGTCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30987</snp_id>
        <super_contig>c005701729.Contig1</super_contig>
        <contig_pos>87883</contig_pos>
        <strand></strand>
        <context>aactctcttc[G/A]acggygatca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCGTTTCTCTGCGTCTCTTCGGCTAGCTTAGAAGGCGCATAACTCTCTTC</left_flank>
        <right_flank>ACGGTGATCAAATTTAATGAAAACAACATAGCTTTATAGGAAATTTCAAG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCTCTTTTCTCGTCCGTCAAATGGACCGTTGCCAATCGGCCCGCAGGGCGCCCAGAGAAGAGATTTTATGCAAAATAGGCAAAATACAGGGACGAATGGATTCATTCATTTCTTTTGCATTTTTGGGGTTTTCAAGGTAAAAGAAATTGGATTGAGAGAGGGGGAAAATGAGAAAATTGGGGGAAACAGAGAATTGGCAATTTGCTTAAGAAAATGTAAATGAAGTTTGTTTCGTCGGTGATGGATAATGATGAGAAAGTGGAACGGTCATCTTGCAAAGCGCATATCTCAAAAACTACAGTAGCTGGCACAAACTTGTCAACTAGAGAAATGTTTAAAACTTCATAACAAACATTTTTGCAGTTGACAACTTTTTTCTAGTTTTTCTAGTCCTTGAGATATACGCCTTTAAAGATCAGGAGTGGGCGCCGACGACGAGAGTCTTCTCGTTTCTCTGCGTCTCTTCGGCTAGCTTAGAAGGCGCATAACTCTCTTCGACGGTGATCAAATTTAATGAAAACAACATAGCTTTATAGGAAATTTCAAGGGCTTTTGAATGAGATAACATTTGCATGATTTTAGAAAAAATGTTTGTTTTTAGTTTAAAAATTTTAGAAAAATTCCCAAATTTGAAAAAATTATTTTCTCTCAAAACCTGTGAAGTAAGCTTGATGCTCAAATTTTGATAATTTTTAAAATTTCATTTTGGTTTAATGTAGCATTTACGGTAGCTACAGTAATCCAAAAAATGGAAAATGAAAGTTCCAAATTTCAACGTCGTATCCTATTATTACACAAAATTGCATTTATCTCAAAAACTACAAAAGTTATCAAAAAATTGTCAACTGCAAAATTGCTCAGCATAAATTTTTACACATTTTTGTTTCTGACTATTTTTTGATAGCTACTGTAGTTTTTGAGCTATGCGCCTTTAAACTTTGGGCGCGCCTTGCTTTTCTGAGCCTCATATCTCCAAAACTACAGTAGCCATCAAAAA</canonical>
            <polymorphic>ATTTCTCTTTTCTCGTCCGTCAAATGGACCGTTGCCAATCGGCCCGCAGGGCGCCCAGAGAAGAGATTTTATGCAAAATAGGCAAAATACAGGGACGAATGGATTCATTCATTTCTTTTGCATTTTTGGGGTTTTCAAGGTAAAAGAAATTGGATTGAGAGAGGGGGAAAATGAGAAAATTGGGGGAAACAGAGAATTGGCAATTTGCTTAAGAAAATGTAAATGAAGTTTGTTTCGTCGGTGATGGATAATGATGAGAAAGTGGAACGGTCATCTTGCAAAGCGCATATCTCAAAAACTACAGTAGCTGGCACAAACTTGTCAACTAGAGAAATGTTTAAAACTTCATAACAAACATTTTTGCAGTTGACAACTTTTTTCTAGTTTTTCTAGTCCTTGAGATATACGCCTTTAAAGATCAGGAGTGGGCGCCGACGACGAGAGTCTTCTCGTTTCTCTGCGTCTCTTCGGCTAGCTTAGAAGGCGCATAACTCTCTTCRACGGTGATCAAATTTAATGAAAACAACATAGCTTTATAGGAAATTTCAAGGGCTTTTGAATGAGATAACATTTGCATGATTTTAGAAAAAATGTTTGTTTTTAGTTTAAAAATTTTAGAAAAATTCCCAAATTTGAAAAAATTATTTTCTCTCAAAACCTGTGAAGTAAGCTTGATGCTCAAATTTTGATAATTTTTAAAATTTCATTTTGGTTTAATGTAGCATTTACGGTAGCTACAGTAATCCAAAAAATGGAAAATGAAAGTTCCAAATTTCAACGTCGTATCCTATTATTACACAAAATTGCATTTATCTCAAAAACTACAAAAGTTATCAAAAAATTGTCAACTGCAAAATTGCTCAGCATAAATTTTTACACATTTTTGTTTCTGACTATTTTTTGATAGCTACTGTAGTTTTTGAGCTATGCGCCTTTAAACTTTGGGCGCGCCTTGCTTTTCTGAGCCTCATATCTCCAAAACTACAGTAGCCATCAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>280 240 217 197 66</canonical_bands>
                <polymorphic_bands>346 240 217 197</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAAGAAATTGGATTGAGAGAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTAAAATCATGCAAATGT</pcr_primer_p2>
		<pcr_amplicon_size>450</pcr_amplicon_size>
		<canonical_amplicon>TAAAAGAAATTGGATTGAGAGAGGGGGAAAATGAGAAAATTGGGGGAAACAGAGAATTGGCAATTTGCTTAAGAAAATGTAAATGAAGTTTGTTTCGTCGGTGATGGATAATGATGAGAAAGTGGAACGGTCATCTTGCAAAGCGCATATCTCAAAAACTACAGTAGCTGGCACAAACTTGTCAACTAGAGAAATGTTTAAAACTTCATAACAAACATTTTTGCAGTTGACAACTTTTTTCTAGTTTTTCTAGTCCTTGAGATATACGCCTTTAAAGATCAGGAGTGGGCGCCGACGACGAGAGTCTTCTCGTTTCTCTGCGTCTCTTCGGCTAGCTTAGAAGGCGCATAACTCTCTTCGACGGTGATCAAATTTAATGAAAACAACATAGCTTTATAGGAAATTTCAAGGGCTTTTGAATGAGATAACATTTGCATGATTTTAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TAAAAGAAATTGGATTGAGAGAGGGGGAAAATGAGAAAATTGGGGGAAACAGAGAATTGGCAATTTGCTTAAGAAAATGTAAATGAAGTTTGTTTCGTCGGTGATGGATAATGATGAGAAAGTGGAACGGTCATCTTGCAAAGCGCATATCTCAAAAACTACAGTAGCTGGCACAAACTTGTCAACTAGAGAAATGTTTAAAACTTCATAACAAACATTTTTGCAGTTGACAACTTTTTTCTAGTTTTTCTAGTCCTTGAGATATACGCCTTTAAAGATCAGGAGTGGGCGCCGACGACGAGAGTCTTCTCGTTTCTCTGCGTCTCTTCGGCTAGCTTAGAAGGCGCATAACTCTCTTCRACGGTGATCAAATTTAATGAAAACAACATAGCTTTATAGGAAATTTCAAGGGCTTTTGAATGAGATAACATTTGCATGATTTTAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30988</snp_id>
        <super_contig>c005701729.Contig1</super_contig>
        <contig_pos>87888</contig_pos>
        <strand></strand>
        <context>tcttcracgg[T/C]gatcaaattt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCTCTGCGTCTCTTCGGCTAGCTTAGAAGGCGCATAACTCTCTTCGACGG</left_flank>
        <right_flank>GATCAAATTTAATGAAAACAACATAGCTTTATAGGAAATTTCAAGGGCTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTTTCTCGTCCGTCAAATGGACCGTTGCCAATCGGCCCGCAGGGCGCCCAGAGAAGAGATTTTATGCAAAATAGGCAAAATACAGGGACGAATGGATTCATTCATTTCTTTTGCATTTTTGGGGTTTTCAAGGTAAAAGAAATTGGATTGAGAGAGGGGGAAAATGAGAAAATTGGGGGAAACAGAGAATTGGCAATTTGCTTAAGAAAATGTAAATGAAGTTTGTTTCGTCGGTGATGGATAATGATGAGAAAGTGGAACGGTCATCTTGCAAAGCGCATATCTCAAAAACTACAGTAGCTGGCACAAACTTGTCAACTAGAGAAATGTTTAAAACTTCATAACAAACATTTTTGCAGTTGACAACTTTTTTCTAGTTTTTCTAGTCCTTGAGATATACGCCTTTAAAGATCAGGAGTGGGCGCCGACGACGAGAGTCTTCTCGTTTCTCTGCGTCTCTTCGGCTAGCTTAGAAGGCGCATAACTCTCTTCGACGGTGATCAAATTTAATGAAAACAACATAGCTTTATAGGAAATTTCAAGGGCTTTTGAATGAGATAACATTTGCATGATTTTAGAAAAAATGTTTGTTTTTAGTTTAAAAATTTTAGAAAAATTCCCAAATTTGAAAAAATTATTTTCTCTCAAAACCTGTGAAGTAAGCTTGATGCTCAAATTTTGATAATTTTTAAAATTTCATTTTGGTTTAATGTAGCATTTACGGTAGCTACAGTAATCCAAAAAATGGAAAATGAAAGTTCCAAATTTCAACGTCGTATCCTATTATTACACAAAATTGCATTTATCTCAAAAACTACAAAAGTTATCAAAAAATTGTCAACTGCAAAATTGCTCAGCATAAATTTTTACACATTTTTGTTTCTGACTATTTTTTGATAGCTACTGTAGTTTTTGAGCTATGCGCCTTTAAACTTTGGGCGCGCCTTGCTTTTCTGAGCCTCATATCTCCAAAACTACAGTAGCCATCAAAAACTTTT</canonical>
            <polymorphic>TCTTTTCTCGTCCGTCAAATGGACCGTTGCCAATCGGCCCGCAGGGCGCCCAGAGAAGAGATTTTATGCAAAATAGGCAAAATACAGGGACGAATGGATTCATTCATTTCTTTTGCATTTTTGGGGTTTTCAAGGTAAAAGAAATTGGATTGAGAGAGGGGGAAAATGAGAAAATTGGGGGAAACAGAGAATTGGCAATTTGCTTAAGAAAATGTAAATGAAGTTTGTTTCGTCGGTGATGGATAATGATGAGAAAGTGGAACGGTCATCTTGCAAAGCGCATATCTCAAAAACTACAGTAGCTGGCACAAACTTGTCAACTAGAGAAATGTTTAAAACTTCATAACAAACATTTTTGCAGTTGACAACTTTTTTCTAGTTTTTCTAGTCCTTGAGATATACGCCTTTAAAGATCAGGAGTGGGCGCCGACGACGAGAGTCTTCTCGTTTCTCTGCGTCTCTTCGGCTAGCTTAGAAGGCGCATAACTCTCTTCGACGGYGATCAAATTTAATGAAAACAACATAGCTTTATAGGAAATTTCAAGGGCTTTTGAATGAGATAACATTTGCATGATTTTAGAAAAAATGTTTGTTTTTAGTTTAAAAATTTTAGAAAAATTCCCAAATTTGAAAAAATTATTTTCTCTCAAAACCTGTGAAGTAAGCTTGATGCTCAAATTTTGATAATTTTTAAAATTTCATTTTGGTTTAATGTAGCATTTACGGTAGCTACAGTAATCCAAAAAATGGAAAATGAAAGTTCCAAATTTCAACGTCGTATCCTATTATTACACAAAATTGCATTTATCTCAAAAACTACAAAAGTTATCAAAAAATTGTCAACTGCAAAATTGCTCAGCATAAATTTTTACACATTTTTGTTTCTGACTATTTTTTGATAGCTACTGTAGTTTTTGAGCTATGCGCCTTTAAACTTTGGGCGCGCCTTGCTTTTCTGAGCCTCATATCTCCAAAACTACAGTAGCCATCAAAAACTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>239 227 200 173 74 34 25 19 9</canonical_bands>
                <polymorphic_bands>427 239 173 74 34 25 19 9</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>238 157 135 127 114 80 79 49 21</canonical_bands>
                <polymorphic_bands>238 236 135 127 114 80 49 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAAGAAATTGGATTGAGAGAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTAAAATCATGCAAATGT</pcr_primer_p2>
		<pcr_amplicon_size>450</pcr_amplicon_size>
		<canonical_amplicon>TAAAAGAAATTGGATTGAGAGAGGGGGAAAATGAGAAAATTGGGGGAAACAGAGAATTGGCAATTTGCTTAAGAAAATGTAAATGAAGTTTGTTTCGTCGGTGATGGATAATGATGAGAAAGTGGAACGGTCATCTTGCAAAGCGCATATCTCAAAAACTACAGTAGCTGGCACAAACTTGTCAACTAGAGAAATGTTTAAAACTTCATAACAAACATTTTTGCAGTTGACAACTTTTTTCTAGTTTTTCTAGTCCTTGAGATATACGCCTTTAAAGATCAGGAGTGGGCGCCGACGACGAGAGTCTTCTCGTTTCTCTGCGTCTCTTCGGCTAGCTTAGAAGGCGCATAACTCTCTTCGACGGTGATCAAATTTAATGAAAACAACATAGCTTTATAGGAAATTTCAAGGGCTTTTGAATGAGATAACATTTGCATGATTTTAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TAAAAGAAATTGGATTGAGAGAGGGGGAAAATGAGAAAATTGGGGGAAACAGAGAATTGGCAATTTGCTTAAGAAAATGTAAATGAAGTTTGTTTCGTCGGTGATGGATAATGATGAGAAAGTGGAACGGTCATCTTGCAAAGCGCATATCTCAAAAACTACAGTAGCTGGCACAAACTTGTCAACTAGAGAAATGTTTAAAACTTCATAACAAACATTTTTGCAGTTGACAACTTTTTTCTAGTTTTTCTAGTCCTTGAGATATACGCCTTTAAAGATCAGGAGTGGGCGCCGACGACGAGAGTCTTCTCGTTTCTCTGCGTCTCTTCGGCTAGCTTAGAAGGCGCATAACTCTCTTCGACGGYGATCAAATTTAATGAAAACAACATAGCTTTATAGGAAATTTCAAGGGCTTTTGAATGAGATAACATTTGCATGATTTTAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30989</snp_id>
        <super_contig>c005701729.Contig1</super_contig>
        <contig_pos>87908</contig_pos>
        <strand></strand>
        <context>taatgaaaac[A/C]acatagcttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCTTAGAAGGCGCATAACTCTCTTCGACGGTGATCAAATTTAATGAAAAC</left_flank>
        <right_flank>ACATAGCTTTATAGGAAATTTCAAGGGCTTTTGAATGAGATAACATTTGC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGACCGTTGCCAATCGGCCCGCAGGGCGCCCAGAGAAGAGATTTTATGCAAAATAGGCAAAATACAGGGACGAATGGATTCATTCATTTCTTTTGCATTTTTGGGGTTTTCAAGGTAAAAGAAATTGGATTGAGAGAGGGGGAAAATGAGAAAATTGGGGGAAACAGAGAATTGGCAATTTGCTTAAGAAAATGTAAATGAAGTTTGTTTCGTCGGTGATGGATAATGATGAGAAAGTGGAACGGTCATCTTGCAAAGCGCATATCTCAAAAACTACAGTAGCTGGCACAAACTTGTCAACTAGAGAAATGTTTAAAACTTCATAACAAACATTTTTGCAGTTGACAACTTTTTTCTAGTTTTTCTAGTCCTTGAGATATACGCCTTTAAAGATCAGGAGTGGGCGCCGACGACGAGAGTCTTCTCGTTTCTCTGCGTCTCTTCGGCTAGCTTAGAAGGCGCATAACTCTCTTCGACGGTGATCAAATTTAATGAAAACAACATAGCTTTATAGGAAATTTCAAGGGCTTTTGAATGAGATAACATTTGCATGATTTTAGAAAAAATGTTTGTTTTTAGTTTAAAAATTTTAGAAAAATTCCCAAATTTGAAAAAATTATTTTCTCTCAAAACCTGTGAAGTAAGCTTGATGCTCAAATTTTGATAATTTTTAAAATTTCATTTTGGTTTAATGTAGCATTTACGGTAGCTACAGTAATCCAAAAAATGGAAAATGAAAGTTCCAAATTTCAACGTCGTATCCTATTATTACACAAAATTGCATTTATCTCAAAAACTACAAAAGTTATCAAAAAATTGTCAACTGCAAAATTGCTCAGCATAAATTTTTACACATTTTTGTTTCTGACTATTTTTTGATAGCTACTGTAGTTTTTGAGCTATGCGCCTTTAAACTTTGGGCGCGCCTTGCTTTTCTGAGCCTCATATCTCCAAAACTACAGTAGCCATCAAAAACTTTTAAACTGCAAAATTGCTGATT</canonical>
            <polymorphic>GGACCGTTGCCAATCGGCCCGCAGGGCGCCCAGAGAAGAGATTTTATGCAAAATAGGCAAAATACAGGGACGAATGGATTCATTCATTTCTTTTGCATTTTTGGGGTTTTCAAGGTAAAAGAAATTGGATTGAGAGAGGGGGAAAATGAGAAAATTGGGGGAAACAGAGAATTGGCAATTTGCTTAAGAAAATGTAAATGAAGTTTGTTTCGTCGGTGATGGATAATGATGAGAAAGTGGAACGGTCATCTTGCAAAGCGCATATCTCAAAAACTACAGTAGCTGGCACAAACTTGTCAACTAGAGAAATGTTTAAAACTTCATAACAAACATTTTTGCAGTTGACAACTTTTTTCTAGTTTTTCTAGTCCTTGAGATATACGCCTTTAAAGATCAGGAGTGGGCGCCGACGACGAGAGTCTTCTCGTTTCTCTGCGTCTCTTCGGCTAGCTTAGAAGGCGCATAACTCTCTTCGACGGTGATCAAATTTAATGAAAACMACATAGCTTTATAGGAAATTTCAAGGGCTTTTGAATGAGATAACATTTGCATGATTTTAGAAAAAATGTTTGTTTTTAGTTTAAAAATTTTAGAAAAATTCCCAAATTTGAAAAAATTATTTTCTCTCAAAACCTGTGAAGTAAGCTTGATGCTCAAATTTTGATAATTTTTAAAATTTCATTTTGGTTTAATGTAGCATTTACGGTAGCTACAGTAATCCAAAAAATGGAAAATGAAAGTTCCAAATTTCAACGTCGTATCCTATTATTACACAAAATTGCATTTATCTCAAAAACTACAAAAGTTATCAAAAAATTGTCAACTGCAAAATTGCTCAGCATAAATTTTTACACATTTTTGTTTCTGACTATTTTTTGATAGCTACTGTAGTTTTTGAGCTATGCGCCTTTAAACTTTGGGCGCGCCTTGCTTTTCTGAGCCTCATATCTCCAAAACTACAGTAGCCATCAAAAACTTTTAAACTGCAAAATTGCTGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAAGAAATTGGATTGAGAGAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTAAAATCATGCAAATGT</pcr_primer_p2>
		<pcr_amplicon_size>450</pcr_amplicon_size>
		<canonical_amplicon>TAAAAGAAATTGGATTGAGAGAGGGGGAAAATGAGAAAATTGGGGGAAACAGAGAATTGGCAATTTGCTTAAGAAAATGTAAATGAAGTTTGTTTCGTCGGTGATGGATAATGATGAGAAAGTGGAACGGTCATCTTGCAAAGCGCATATCTCAAAAACTACAGTAGCTGGCACAAACTTGTCAACTAGAGAAATGTTTAAAACTTCATAACAAACATTTTTGCAGTTGACAACTTTTTTCTAGTTTTTCTAGTCCTTGAGATATACGCCTTTAAAGATCAGGAGTGGGCGCCGACGACGAGAGTCTTCTCGTTTCTCTGCGTCTCTTCGGCTAGCTTAGAAGGCGCATAACTCTCTTCGACGGTGATCAAATTTAATGAAAACAACATAGCTTTATAGGAAATTTCAAGGGCTTTTGAATGAGATAACATTTGCATGATTTTAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TAAAAGAAATTGGATTGAGAGAGGGGGAAAATGAGAAAATTGGGGGAAACAGAGAATTGGCAATTTGCTTAAGAAAATGTAAATGAAGTTTGTTTCGTCGGTGATGGATAATGATGAGAAAGTGGAACGGTCATCTTGCAAAGCGCATATCTCAAAAACTACAGTAGCTGGCACAAACTTGTCAACTAGAGAAATGTTTAAAACTTCATAACAAACATTTTTGCAGTTGACAACTTTTTTCTAGTTTTTCTAGTCCTTGAGATATACGCCTTTAAAGATCAGGAGTGGGCGCCGACGACGAGAGTCTTCTCGTTTCTCTGCGTCTCTTCGGCTAGCTTAGAAGGCGCATAACTCTCTTCGACGGTGATCAAATTTAATGAAAACMACATAGCTTTATAGGAAATTTCAAGGGCTTTTGAATGAGATAACATTTGCATGATTTTAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30990</snp_id>
        <super_contig>c005701729.Contig1</super_contig>
        <contig_pos>87920</contig_pos>
        <strand></strand>
        <context>catagcttta[T/A]aggaaatttc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CATAACTCTCTTCGACGGTGATCAAATTTAATGAAAACAACATAGCTTTA</left_flank>
        <right_flank>AGGAAATTTCAAGGGCTTTTGAATGAGATAACATTTGCATGATTTTAGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGGCCCGCAGGGCGCCCAGAGAAGAGATTTTATGCAAAATAGGCAAAATACAGGGACGAATGGATTCATTCATTTCTTTTGCATTTTTGGGGTTTTCAAGGTAAAAGAAATTGGATTGAGAGAGGGGGAAAATGAGAAAATTGGGGGAAACAGAGAATTGGCAATTTGCTTAAGAAAATGTAAATGAAGTTTGTTTCGTCGGTGATGGATAATGATGAGAAAGTGGAACGGTCATCTTGCAAAGCGCATATCTCAAAAACTACAGTAGCTGGCACAAACTTGTCAACTAGAGAAATGTTTAAAACTTCATAACAAACATTTTTGCAGTTGACAACTTTTTTCTAGTTTTTCTAGTCCTTGAGATATACGCCTTTAAAGATCAGGAGTGGGCGCCGACGACGAGAGTCTTCTCGTTTCTCTGCGTCTCTTCGGCTAGCTTAGAAGGCGCATAACTCTCTTCGACGGTGATCAAATTTAATGAAAACAACATAGCTTTATAGGAAATTTCAAGGGCTTTTGAATGAGATAACATTTGCATGATTTTAGAAAAAATGTTTGTTTTTAGTTTAAAAATTTTAGAAAAATTCCCAAATTTGAAAAAATTATTTTCTCTCAAAACCTGTGAAGTAAGCTTGATGCTCAAATTTTGATAATTTTTAAAATTTCATTTTGGTTTAATGTAGCATTTACGGTAGCTACAGTAATCCAAAAAATGGAAAATGAAAGTTCCAAATTTCAACGTCGTATCCTATTATTACACAAAATTGCATTTATCTCAAAAACTACAAAAGTTATCAAAAAATTGTCAACTGCAAAATTGCTCAGCATAAATTTTTACACATTTTTGTTTCTGACTATTTTTTGATAGCTACTGTAGTTTTTGAGCTATGCGCCTTTAAACTTTGGGCGCGCCTTGCTTTTCTGAGCCTCATATCTCCAAAACTACAGTAGCCATCAAAAACTTTTAAACTGCAAAATTGCTGATTATAAAACTTTAC</canonical>
            <polymorphic>ATCGGCCCGCAGGGCGCCCAGAGAAGAGATTTTATGCAAAATAGGCAAAATACAGGGACGAATGGATTCATTCATTTCTTTTGCATTTTTGGGGTTTTCAAGGTAAAAGAAATTGGATTGAGAGAGGGGGAAAATGAGAAAATTGGGGGAAACAGAGAATTGGCAATTTGCTTAAGAAAATGTAAATGAAGTTTGTTTCGTCGGTGATGGATAATGATGAGAAAGTGGAACGGTCATCTTGCAAAGCGCATATCTCAAAAACTACAGTAGCTGGCACAAACTTGTCAACTAGAGAAATGTTTAAAACTTCATAACAAACATTTTTGCAGTTGACAACTTTTTTCTAGTTTTTCTAGTCCTTGAGATATACGCCTTTAAAGATCAGGAGTGGGCGCCGACGACGAGAGTCTTCTCGTTTCTCTGCGTCTCTTCGGCTAGCTTAGAAGGCGCATAACTCTCTTCGACGGTGATCAAATTTAATGAAAACAACATAGCTTTAWAGGAAATTTCAAGGGCTTTTGAATGAGATAACATTTGCATGATTTTAGAAAAAATGTTTGTTTTTAGTTTAAAAATTTTAGAAAAATTCCCAAATTTGAAAAAATTATTTTCTCTCAAAACCTGTGAAGTAAGCTTGATGCTCAAATTTTGATAATTTTTAAAATTTCATTTTGGTTTAATGTAGCATTTACGGTAGCTACAGTAATCCAAAAAATGGAAAATGAAAGTTCCAAATTTCAACGTCGTATCCTATTATTACACAAAATTGCATTTATCTCAAAAACTACAAAAGTTATCAAAAAATTGTCAACTGCAAAATTGCTCAGCATAAATTTTTACACATTTTTGTTTCTGACTATTTTTTGATAGCTACTGTAGTTTTTGAGCTATGCGCCTTTAAACTTTGGGCGCGCCTTGCTTTTCTGAGCCTCATATCTCCAAAACTACAGTAGCCATCAAAAACTTTTAAACTGCAAAATTGCTGATTATAAAACTTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAAGAAATTGGATTGAGAGAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTAAAATCATGCAAATG</pcr_primer_p2>
		<pcr_amplicon_size>450</pcr_amplicon_size>
		<canonical_amplicon>TAAAAGAAATTGGATTGAGAGAGGGGGAAAATGAGAAAATTGGGGGAAACAGAGAATTGGCAATTTGCTTAAGAAAATGTAAATGAAGTTTGTTTCGTCGGTGATGGATAATGATGAGAAAGTGGAACGGTCATCTTGCAAAGCGCATATCTCAAAAACTACAGTAGCTGGCACAAACTTGTCAACTAGAGAAATGTTTAAAACTTCATAACAAACATTTTTGCAGTTGACAACTTTTTTCTAGTTTTTCTAGTCCTTGAGATATACGCCTTTAAAGATCAGGAGTGGGCGCCGACGACGAGAGTCTTCTCGTTTCTCTGCGTCTCTTCGGCTAGCTTAGAAGGCGCATAACTCTCTTCGACGGTGATCAAATTTAATGAAAACAACATAGCTTTATAGGAAATTTCAAGGGCTTTTGAATGAGATAACATTTGCATGATTTTAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TAAAAGAAATTGGATTGAGAGAGGGGGAAAATGAGAAAATTGGGGGAAACAGAGAATTGGCAATTTGCTTAAGAAAATGTAAATGAAGTTTGTTTCGTCGGTGATGGATAATGATGAGAAAGTGGAACGGTCATCTTGCAAAGCGCATATCTCAAAAACTACAGTAGCTGGCACAAACTTGTCAACTAGAGAAATGTTTAAAACTTCATAACAAACATTTTTGCAGTTGACAACTTTTTTCTAGTTTTTCTAGTCCTTGAGATATACGCCTTTAAAGATCAGGAGTGGGCGCCGACGACGAGAGTCTTCTCGTTTCTCTGCGTCTCTTCGGCTAGCTTAGAAGGCGCATAACTCTCTTCGACGGTGATCAAATTTAATGAAAACAACATAGCTTTAWAGGAAATTTCAAGGGCTTTTGAATGAGATAACATTTGCATGATTTTAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30991</snp_id>
        <super_contig>c005701729.Contig1</super_contig>
        <contig_pos>89545</contig_pos>
        <strand></strand>
        <context>tttaaaactg[A/G]aaaactggga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGGCTCAAAATCACTCGATTTTCATGATTTTTAGCTTATTTTAAAACTG</left_flank>
        <right_flank>AAAACTGGGAAATTAGAAATCGTTAAACTTCTTGCTTTTAAAATAAAGTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGATAGGTACTGTAGTTTGGGAGATATGCGTCTTGGGAAATCGCGCCCAAAGTTTAAAGGCACATAACTCGAAAACTGCAGTAGCTATCAATAAGTGGTCAACTACAAAAATATGTAAAATTCTAAGCTGAGCAATGTTGTAATTGACAACTTTTTGATAAGTTTTTCGTTTTTCGAGATAAAAAACTTTTTTTGAAAGCAGCTCGAATTTTCAAATTTTTTCAAAAAAAGTTTTTTGAAGTTTTTGGATTACTGTAGCTAGCGTTAACTTTGTATATTTTATATCACTCGCAAGCCCTTGAAATTTCCTTTAAAACTAAACAAATTTCATAAATTTTGGATACCGTTCAAGCGAGTTATGCGCCTTTAAATTTAGCTGGAGAGGCGCAGAGAAACGAGAGGACTCTAGCTTCTCTGCATCTCTTTTCAAACTCCAAATGCCTGTATCTCGGCTCAAAATCACTCGATTTTCATGATTTTTAGCTTATTTTAAAACTGAAAAACTGGGAAATTAGAAATCGTTAAACTTCTTGCTTTTAAAATAAAGTTTTCAGGTGGAAACCGATTCTCTGTGGATCGACCTGATGGATGTCCAAATCAAGCACTCTGCGCCATCTCGTCCACTGGAAAATCCACTCCTTAGAAGGGATAAACGCTTCGCAAAACTGCCAGACTGGTGTCAGTGTGATTCAGCACCACAATGTCCGCCCGGACCACCAGGACCACAAGGAGCTCCAGGAGCACCAGGAAGTAAGAATTGTGCTATGAGTATTTTATATCATTCAAGAGGTCTTAAAGTTTCCAGCAAGACTATATCGTTTTTTATCAATTTTAGTCTAATTTGAAGCGAGCCATGCGCCTTTGAAGTTTGTCGACGAGACGCAGAGAAACGAGATCTCTCTAGCTTCTCTGCGTCTCCCTCCCCTCCAAGAAAACGCGCGCCACCTTTAAAGGCGCATGACTCAAAAACTACTGTAGCCATCACAAAGATGTAAACTA</canonical>
            <polymorphic>TTGATAGGTACTGTAGTTTGGGAGATATGCGTCTTGGGAAATCGCGCCCAAAGTTTAAAGGCACATAACTCGAAAACTGCAGTAGCTATCAATAAGTGGTCAACTACAAAAATATGTAAAATTCTAAGCTGAGCAATGTTGTAATTGACAACTTTTTGATAAGTTTTTCGTTTTTCGAGATAAAAAACTTTTTTTGAAAGCAGCTCGAATTTTCAAATTTTTTCAAAAAAAGTTTTTTGAAGTTTTTGGATTACTGTAGCTAGCGTTAACTTTGTATATTTTATATCACTCGCAAGCCCTTGAAATTTCCTTTAAAACTAAACAAATTTCATAAATTTTGGATACCGTTCAAGCGAGTTATGCGCCTTTAAATTTAGCTGGAGAGGCGCAGAGAAACGAGAGGACTCTAGCTTCTCTGCATCTCTTTTCAAACTCCAAATGCCTGTATCTCGGCTCAAAATCACTCGATTTTCATGATTTTTAGCTTATTTTAAAACTGRAAAACTGGGAAATTAGAAATCGTTAAACTTCTTGCTTTTAAAATAAAGTTTTCAGGTGGAAACCGATTCTCTGTGGATCGACCTGATGGATGTCCAAATCAAGCACTCTGCGCCATCTCGTCCACTGGAAAATCCACTCCTTAGAAGGGATAAACGCTTCGCAAAACTGCCAGACTGGTGTCAGTGTGATTCAGCACCACAATGTCCGCCCGGACCACCAGGACCACAAGGAGCTCCAGGAGCACCAGGAAGTAAGAATTGTGCTATGAGTATTTTATATCATTCAAGAGGTCTTAAAGTTTCCAGCAAGACTATATCGTTTTTTATCAATTTTAGTCTAATTTGAAGCGAGCCATGCGCCTTTGAAGTTTGTCGACGAGACGCAGAGAAACGAGATCTCTCTAGCTTCTCTGCGTCTCCCTCCCCTCCAAGAAAACGCGCGCCACCTTTAAAGGCGCATGACTCAAAAACTACTGTAGCCATCACAAAGATGTAAACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTGTAGCTAGCGTTAACTTTGT</pcr_primer_p1>
		<pcr_primer_p2>TTCCACCTGAAAACTTTATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>ACTGTAGCTAGCGTTAACTTTGTATATTTTATATCACTCGCAAGCCCTTGAAATTTCCTTTAAAACTAAACAAATTTCATAAATTTTGGATACCGTTCAAGCGAGTTATGCGCCTTTAAATTTAGCTGGAGAGGCGCAGAGAAACGAGAGGACTCTAGCTTCTCTGCATCTCTTTTCAAACTCCAAATGCCTGTATCTCGGCTCAAAATCACTCGATTTTCATGATTTTTAGCTTATTTTAAAACTGAAAAACTGGGAAATTAGAAATCGTTAAACTTCTTGCTTTTAAAATAAAGTTTTCAGGTGGAA</canonical_amplicon>
		<polymorphic_amplicon>ACTGTAGCTAGCGTTAACTTTGTATATTTTATATCACTCGCAAGCCCTTGAAATTTCCTTTAAAACTAAACAAATTTCATAAATTTTGGATACCGTTCAAGCGAGTTATGCGCCTTTAAATTTAGCTGGAGAGGCGCAGAGAAACGAGAGGACTCTAGCTTCTCTGCATCTCTTTTCAAACTCCAAATGCCTGTATCTCGGCTCAAAATCACTCGATTTTCATGATTTTTAGCTTATTTTAAAACTGRAAAACTGGGAAATTAGAAATCGTTAAACTTCTTGCTTTTAAAATAAAGTTTTCAGGTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30992</snp_id>
        <super_contig>c005701729.Contig1</super_contig>
        <contig_pos>96867</contig_pos>
        <strand>+</strand>
        <context>CTTTTTGTAA[A/T]TGTATACAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCTCTCTTTTTCTCTATCTCTCTTGTACTAGTATAACCACTTTTTGTAA</left_flank>
        <right_flank>TGTATACAAGACAACAAAAATAGAAATATCGTAAAACCTCAAGGGCAGCT</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTATCATTTGGACTGTCTTTCGGTTCACTTCTTTTTGTCAAACTGTCAATCAATTCTTATTATTTCCCACAATGAATTAGTCACTTCAGAATAGCGAAAAGAAAAATTTCAAAAAATTTCGAAATCTATTTTCCCCAACAAAATTTTTTTCTGGAAAAAAAACCCTGAAAAACTGAAGTCATCTGGATTTACAGATTCCTATTTTGATCGTTTCAAATGTTTTTCCGCCTGAAATTTTTTCAGTTTCAGAACATTCCGAAATTCGGATTTCTATCAAAAAACTATCAATCACTTGTTCGTTGTCGTAGAAACGTTCTGGTGTCTTTTTGATTTTCAAATACATTTAATATTGTATAGGTTTTTGGCAGGCACATAAACATTATATATTTTTCATCTCTATTATATAGCCGAAATCGCTTAATCTCCCCGAATCTATTTTTCTCTGCGTCTCTCTTTTTCTCTATCTCTCTTGTACTAGTATAACCACTTTTTGTAAATGTATACAAGACAACAAAAATAGAAATATCGTAAAACCTCAAGGGCAGCTTTTCTATTGTTCCAAGGCGCCTCCGGAGGGACACTTTTAGTACAGGGGGCCCTTCTATTACAGGGGGTTCTTATATTTTTTCCGAAATTGAAAAATTCAAAATTCATGAAAATCTGTCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATGGAGTTTCGACAAATAGTTATTAAATTGTGGAGTTCCCGAAATTTTCTGATTTCAAAACACACATTTTGAAGGGGGACCTTCTTCACAGAGGGCCCTTCTATTCTTCCAAACCCCTCTCGGAGGGCCCTTCTATTGAATGGGGCCCTTCTAATACAGGTTTTACGGTATTTTTTTATTATTTCAGTATGTTTAGTTCGAAGAAAAAACTTTGAATGTTTTTTCAATTCCTAAAGTTCTCTGAAAACTGAAAATCAGATTTTTCGATTCTCCATTTTTGAAACTTTTCAATTTCT</canonical>
            <polymorphic>GTTTTATCATTTGGACTGTCTTTCGGTTCACTTCTTTTTGTCAAACTGTCAATCAATTCTTATTATTTCCCACAATGAATTAGTCACTTCAGAATAGCGAAAAGAAAAATTTCAAAAAATTTCGAAATCTATTTTCCCCAACAAAATTTTTTTCTGGAAAAAAAACCCTGAAAAACTGAAGTCATCTGGATTTACAGATTCCTATTTTGATCGTTTCAAATGTTTTTCCGCCTGAAATTTTTTCAGTTTCAGAACATTCCGAAATTCGGATTTCTATCAAAAAACTATCAATCACTTGTTCGTTGTCGTAGAAACGTTCTGGTGTCTTTTTGATTTTCAAATACATTTAATATTGTATAGGTTTTTGGCAGGCACATAAACATTATATATTTTTCATCTCTATTATATAGCCGAAATCGCTTAATCTCCCCGAATCTATTTTTCTCTGCGTCTCTCTTTTTCTCTATCTCTCTTGTACTAGTATAACCACTTTTTGTAAWTGTATACAAGACAACAAAAATAGAAATATCGTAAAACCTCAAGGGCAGCTTTTCTATTGTTCCAAGGCGCCTCCGGAGGGACACTTTTAGTACAGGGGGCCCTTCTATTACAGGGGGTTCTTATATTTTTTCCGAAATTGAAAAATTCAAAATTCATGAAAATCTGTCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATGGAGTTTCGACAAATAGTTATTAAATTGTGGAGTTCCCGAAATTTTCTGATTTCAAAACACACATTTTGAAGGGGGACCTTCTTCACAGAGGGCCCTTCTATTCTTCCAAACCCCTCTCGGAGGGCCCTTCTATTGAATGGGGCCCTTCTAATACAGGTTTTACGGTATTTTTTTATTATTTCAGTATGTTTAGTTCGAAGAAAAAACTTTGAATGTTTTTTCAATTCCTAAAGTTCTCTGAAAACTGAAAATCAGATTTTTCGATTCTCCATTTTTGAAACTTTTCAATTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTTCTCTGCGTCTCTCTT</pcr_primer_p1>
		<pcr_primer_p2>CTAAATTTTGGTGAAATTGACAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATTTTTCTCTGCGTCTCTCTTTTTCTCTATCTCTCTTGTACTAGTATAACCACTTTTTGTAAATGTATACAAGACAACAAAAATAGAAATATCGTAAAACCTCAAGGGCAGCTTTTCTATTGTTCCAAGGCGCCTCCGGAGGGACACTTTTAGTACAGGGGGCCCTTCTATTACAGGGGGTTCTTATATTTTTTCCGAAATTGAAAAATTCAAAATTCATGAAAATCTGTCAATTTCACCAAAATTTAG</canonical_amplicon>
		<polymorphic_amplicon>TATTTTTCTCTGCGTCTCTCTTTTTCTCTATCTCTCTTGTACTAGTATAACCACTTTTTGTAAWTGTATACAAGACAACAAAAATAGAAATATCGTAAAACCTCAAGGGCAGCTTTTCTATTGTTCCAAGGCGCCTCCGGAGGGACACTTTTAGTACAGGGGGCCCTTCTATTACAGGGGGTTCTTATATTTTTTCCGAAATTGAAAAATTCAAAATTCATGAAAATCTGTCAATTTCACCAAAATTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30993</snp_id>
        <super_contig>c005701729.Contig1</super_contig>
        <contig_pos>96954</contig_pos>
        <strand>+</strand>
        <context>AGGGACACTT[C/T]TAKTACAGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTCAAGGGCAGCTTTTCTATTGTTCCAAGGCGCCTCCGGAGGGACACTT</left_flank>
        <right_flank>TAGTACAGGGGGCCCTTCTATTACAGGGGGTTCTTATATTTTTTCCGAAA</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAGAATAGCGAAAAGAAAAATTTCAAAAAATTTCGAAATCTATTTTCCCCAACAAAATTTTTTTCTGGAAAAAAAACCCTGAAAAACTGAAGTCATCTGGATTTACAGATTCCTATTTTGATCGTTTCAAATGTTTTTCCGCCTGAAATTTTTTCAGTTTCAGAACATTCCGAAATTCGGATTTCTATCAAAAAACTATCAATCACTTGTTCGTTGTCGTAGAAACGTTCTGGTGTCTTTTTGATTTTCAAATACATTTAATATTGTATAGGTTTTTGGCAGGCACATAAACATTATATATTTTTCATCTCTATTATATAGCCGAAATCGCTTAATCTCCCCGAATCTATTTTTCTCTGCGTCTCTCTTTTTCTCTATCTCTCTTGTACTAGTATAACCACTTTTTGTAAATGTATACAAGACAACAAAAATAGAAATATCGTAAAACCTCAAGGGCAGCTTTTCTATTGTTCCAAGGCGCCTCCGGAGGGACACTTTTAGTACAGGGGGCCCTTCTATTACAGGGGGTTCTTATATTTTTTCCGAAATTGAAAAATTCAAAATTCATGAAAATCTGTCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATGGAGTTTCGACAAATAGTTATTAAATTGTGGAGTTCCCGAAATTTTCTGATTTCAAAACACACATTTTGAAGGGGGACCTTCTTCACAGAGGGCCCTTCTATTCTTCCAAACCCCTCTCGGAGGGCCCTTCTATTGAATGGGGCCCTTCTAATACAGGTTTTACGGTATTTTTTTATTATTTCAGTATGTTTAGTTCGAAGAAAAAACTTTGAATGTTTTTTCAATTCCTAAAGTTCTCTGAAAACTGAAAATCAGATTTTTCGATTCTCCATTTTTGAAACTTTTCAATTTCTGAGTTCATCGAGCTGTTCAAATTTCCCGTATTCCCATTTTTACAACTTTCTGAATTTTCGAAACATTCTCAACGTTTTGAGCTTTTT</canonical>
            <polymorphic>TTCAGAATAGCGAAAAGAAAAATTTCAAAAAATTTCGAAATCTATTTTCCCCAACAAAATTTTTTTCTGGAAAAAAAACCCTGAAAAACTGAAGTCATCTGGATTTACAGATTCCTATTTTGATCGTTTCAAATGTTTTTCCGCCTGAAATTTTTTCAGTTTCAGAACATTCCGAAATTCGGATTTCTATCAAAAAACTATCAATCACTTGTTCGTTGTCGTAGAAACGTTCTGGTGTCTTTTTGATTTTCAAATACATTTAATATTGTATAGGTTTTTGGCAGGCACATAAACATTATATATTTTTCATCTCTATTATATAGCCGAAATCGCTTAATCTCCCCGAATCTATTTTTCTCTGCGTCTCTCTTTTTCTCTATCTCTCTTGTACTAGTATAACCACTTTTTGTAAATGTATACAAGACAACAAAAATAGAAATATCGTAAAACCTCAAGGGCAGCTTTTCTATTGTTCCAAGGCGCCTCCGGAGGGACACTTYTAGTACAGGGGGCCCTTCTATTACAGGGGGTTCTTATATTTTTTCCGAAATTGAAAAATTCAAAATTCATGAAAATCTGTCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATGGAGTTTCGACAAATAGTTATTAAATTGTGGAGTTCCCGAAATTTTCTGATTTCAAAACACACATTTTGAAGGGGGACCTTCTTCACAGAGGGCCCTTCTATTCTTCCAAACCCCTCTCGGAGGGCCCTTCTATTGAATGGGGCCCTTCTAATACAGGTTTTACGGTATTTTTTTATTATTTCAGTATGTTTAGTTCGAAGAAAAAACTTTGAATGTTTTTTCAATTCCTAAAGTTCTCTGAAAACTGAAAATCAGATTTTTCGATTCTCCATTTTTGAAACTTTTCAATTTCTGAGTTCATCGAGCTGTTCAAATTTCCCGTATTCCCATTTTTACAACTTTCTGAATTTTCGAAACATTCTCAACGTTTTGAGCTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTTCTCTGCGTCTCTCTT</pcr_primer_p1>
		<pcr_primer_p2>CTAAATTTTGGTGAAATTGACAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATTTTTCTCTGCGTCTCTCTTTTTCTCTATCTCTCTTGTACTAGTATAACCACTTTTTGTAAATGTATACAAGACAACAAAAATAGAAATATCGTAAAACCTCAAGGGCAGCTTTTCTATTGTTCCAAGGCGCCTCCGGAGGGACACTTTTAGTACAGGGGGCCCTTCTATTACAGGGGGTTCTTATATTTTTTCCGAAATTGAAAAATTCAAAATTCATGAAAATCTGTCAATTTCACCAAAATTTAG</canonical_amplicon>
		<polymorphic_amplicon>TATTTTTCTCTGCGTCTCTCTTTTTCTCTATCTCTCTTGTACTAGTATAACCACTTTTTGTAAATGTATACAAGACAACAAAAATAGAAATATCGTAAAACCTCAAGGGCAGCTTTTCTATTGTTCCAAGGCGCCTCCGGAGGGACACTTYTAGTACAGGGGGCCCTTCTATTACAGGGGGTTCTTATATTTTTTCCGAAATTGAAAAATTCAAAATTCATGAAAATCTGTCAATTTCACCAAAATTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30994</snp_id>
        <super_contig>c005701729.Contig1</super_contig>
        <contig_pos>96957</contig_pos>
        <strand>+</strand>
        <context>GACACTTYTA[G/T]TACAGGGGGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAAGGGCAGCTTTTCTATTGTTCCAAGGCGCCTCCGGAGGGACACTTTTA</left_flank>
        <right_flank>TACAGGGGGCCCTTCTATTACAGGGGGTTCTTATATTTTTTCCGAAATTG</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAATAGCGAAAAGAAAAATTTCAAAAAATTTCGAAATCTATTTTCCCCAACAAAATTTTTTTCTGGAAAAAAAACCCTGAAAAACTGAAGTCATCTGGATTTACAGATTCCTATTTTGATCGTTTCAAATGTTTTTCCGCCTGAAATTTTTTCAGTTTCAGAACATTCCGAAATTCGGATTTCTATCAAAAAACTATCAATCACTTGTTCGTTGTCGTAGAAACGTTCTGGTGTCTTTTTGATTTTCAAATACATTTAATATTGTATAGGTTTTTGGCAGGCACATAAACATTATATATTTTTCATCTCTATTATATAGCCGAAATCGCTTAATCTCCCCGAATCTATTTTTCTCTGCGTCTCTCTTTTTCTCTATCTCTCTTGTACTAGTATAACCACTTTTTGTAAATGTATACAAGACAACAAAAATAGAAATATCGTAAAACCTCAAGGGCAGCTTTTCTATTGTTCCAAGGCGCCTCCGGAGGGACACTTTTAGTACAGGGGGCCCTTCTATTACAGGGGGTTCTTATATTTTTTCCGAAATTGAAAAATTCAAAATTCATGAAAATCTGTCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATGGAGTTTCGACAAATAGTTATTAAATTGTGGAGTTCCCGAAATTTTCTGATTTCAAAACACACATTTTGAAGGGGGACCTTCTTCACAGAGGGCCCTTCTATTCTTCCAAACCCCTCTCGGAGGGCCCTTCTATTGAATGGGGCCCTTCTAATACAGGTTTTACGGTATTTTTTTATTATTTCAGTATGTTTAGTTCGAAGAAAAAACTTTGAATGTTTTTTCAATTCCTAAAGTTCTCTGAAAACTGAAAATCAGATTTTTCGATTCTCCATTTTTGAAACTTTTCAATTTCTGAGTTCATCGAGCTGTTCAAATTTCCCGTATTCCCATTTTTACAACTTTCTGAATTTTCGAAACATTCTCAACGTTTTGAGCTTTTTGAT</canonical>
            <polymorphic>AGAATAGCGAAAAGAAAAATTTCAAAAAATTTCGAAATCTATTTTCCCCAACAAAATTTTTTTCTGGAAAAAAAACCCTGAAAAACTGAAGTCATCTGGATTTACAGATTCCTATTTTGATCGTTTCAAATGTTTTTCCGCCTGAAATTTTTTCAGTTTCAGAACATTCCGAAATTCGGATTTCTATCAAAAAACTATCAATCACTTGTTCGTTGTCGTAGAAACGTTCTGGTGTCTTTTTGATTTTCAAATACATTTAATATTGTATAGGTTTTTGGCAGGCACATAAACATTATATATTTTTCATCTCTATTATATAGCCGAAATCGCTTAATCTCCCCGAATCTATTTTTCTCTGCGTCTCTCTTTTTCTCTATCTCTCTTGTACTAGTATAACCACTTTTTGTAAATGTATACAAGACAACAAAAATAGAAATATCGTAAAACCTCAAGGGCAGCTTTTCTATTGTTCCAAGGCGCCTCCGGAGGGACACTTTTAKTACAGGGGGCCCTTCTATTACAGGGGGTTCTTATATTTTTTCCGAAATTGAAAAATTCAAAATTCATGAAAATCTGTCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATGGAGTTTCGACAAATAGTTATTAAATTGTGGAGTTCCCGAAATTTTCTGATTTCAAAACACACATTTTGAAGGGGGACCTTCTTCACAGAGGGCCCTTCTATTCTTCCAAACCCCTCTCGGAGGGCCCTTCTATTGAATGGGGCCCTTCTAATACAGGTTTTACGGTATTTTTTTATTATTTCAGTATGTTTAGTTCGAAGAAAAAACTTTGAATGTTTTTTCAATTCCTAAAGTTCTCTGAAAACTGAAAATCAGATTTTTCGATTCTCCATTTTTGAAACTTTTCAATTTCTGAGTTCATCGAGCTGTTCAAATTTCCCGTATTCCCATTTTTACAACTTTCTGAATTTTCGAAACATTCTCAACGTTTTGAGCTTTTTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 386 115</canonical_bands>
                <polymorphic_bands>614 386</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>501 384 115</canonical_bands>
                <polymorphic_bands>616 384</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTTTTCTCTGCGTCTCTCTT</pcr_primer_p1>
		<pcr_primer_p2>CTAAATTTTGGTGAAATTGACAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATTTTTCTCTGCGTCTCTCTTTTTCTCTATCTCTCTTGTACTAGTATAACCACTTTTTGTAAATGTATACAAGACAACAAAAATAGAAATATCGTAAAACCTCAAGGGCAGCTTTTCTATTGTTCCAAGGCGCCTCCGGAGGGACACTTTTAGTACAGGGGGCCCTTCTATTACAGGGGGTTCTTATATTTTTTCCGAAATTGAAAAATTCAAAATTCATGAAAATCTGTCAATTTCACCAAAATTTAG</canonical_amplicon>
		<polymorphic_amplicon>TATTTTTCTCTGCGTCTCTCTTTTTCTCTATCTCTCTTGTACTAGTATAACCACTTTTTGTAAATGTATACAAGACAACAAAAATAGAAATATCGTAAAACCTCAAGGGCAGCTTTTCTATTGTTCCAAGGCGCCTCCGGAGGGACACTTTTAKTACAGGGGGCCCTTCTATTACAGGGGGTTCTTATATTTTTTCCGAAATTGAAAAATTCAAAATTCATGAAAATCTGTCAATTTCACCAAAATTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30995</snp_id>
        <super_contig>c005701729.Contig1</super_contig>
        <contig_pos>97151</contig_pos>
        <strand>+</strand>
        <context>TGAAGGGGGA[C/T]CTTCTTCACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGGAGTTCCCGAAATTTTCTGATTTCAAAACACACATTTTGAAGGGGGA</left_flank>
        <right_flank>CTTCTTCACAGAGGGCCCTTCTATTCTTCCAAACCCCTCTCGGAGGGCCC</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATCAATCACTTGTTCGTTGTCGTAGAAACGTTCTGGTGTCTTTTTGATTTTCAAATACATTTAATATTGTATAGGTTTTTGGCAGGCACATAAACATTATATATTTTTCATCTCTATTATATAGCCGAAATCGCTTAATCTCCCCGAATCTATTTTTCTCTGCGTCTCTCTTTTTCTCTATCTCTCTTGTACTAGTATAACCACTTTTTGTAAATGTATACAAGACAACAAAAATAGAAATATCGTAAAACCTCAAGGGCAGCTTTTCTATTGTTCCAAGGCGCCTCCGGAGGGACACTTTTAGTACAGGGGGCCCTTCTATTACAGGGGGTTCTTATATTTTTTCCGAAATTGAAAAATTCAAAATTCATGAAAATCTGTCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATGGAGTTTCGACAAATAGTTATTAAATTGTGGAGTTCCCGAAATTTTCTGATTTCAAAACACACATTTTGAAGGGGGACCTTCTTCACAGAGGGCCCTTCTATTCTTCCAAACCCCTCTCGGAGGGCCCTTCTATTGAATGGGGCCCTTCTAATACAGGTTTTACGGTATTTTTTTATTATTTCAGTATGTTTAGTTCGAAGAAAAAACTTTGAATGTTTTTTCAATTCCTAAAGTTCTCTGAAAACTGAAAATCAGATTTTTCGATTCTCCATTTTTGAAACTTTTCAATTTCTGAGTTCATCGAGCTGTTCAAATTTCCCGTATTCCCATTTTTACAACTTTCTGAATTTTCGAAACATTCTCAACGTTTTGAGCTTTTTGATTGAACAATTATCAACGTTTTTCAGGTAATAATGGAAAGAGTGACCGTACGAATGGCACGGTCCGATCGCCGAACCCCATGGGGGTTCGGTGTCACCGAAGCTCCAGATGGTGCCGTTTTGATTGTCAATGTGAGTTTTTTTTACTAAAAAATTATGTCAGAGATTTCGAAAAAATTTAAAAAATCCTGGAAGTT</canonical>
            <polymorphic>CTATCAATCACTTGTTCGTTGTCGTAGAAACGTTCTGGTGTCTTTTTGATTTTCAAATACATTTAATATTGTATAGGTTTTTGGCAGGCACATAAACATTATATATTTTTCATCTCTATTATATAGCCGAAATCGCTTAATCTCCCCGAATCTATTTTTCTCTGCGTCTCTCTTTTTCTCTATCTCTCTTGTACTAGTATAACCACTTTTTGTAAATGTATACAAGACAACAAAAATAGAAATATCGTAAAACCTCAAGGGCAGCTTTTCTATTGTTCCAAGGCGCCTCCGGAGGGACACTTTTAGTACAGGGGGCCCTTCTATTACAGGGGGTTCTTATATTTTTTCCGAAATTGAAAAATTCAAAATTCATGAAAATCTGTCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATGGAGTTTCGACAAATAGTTATTAAATTGTGGAGTTCCCGAAATTTTCTGATTTCAAAACACACATTTTGAAGGGGGAYCTTCTTCACAGAGGGCCCTTCTATTCTTCCAAACCCCTCTCGGAGGGCCCTTCTATTGAATGGGGCCCTTCTAATACAGGTTTTACGGTATTTTTTTATTATTTCAGTATGTTTAGTTCGAAGAAAAAACTTTGAATGTTTTTTCAATTCCTAAAGTTCTCTGAAAACTGAAAATCAGATTTTTCGATTCTCCATTTTTGAAACTTTTCAATTTCTGAGTTCATCGAGCTGTTCAAATTTCCCGTATTCCCATTTTTACAACTTTCTGAATTTTCGAAACATTCTCAACGTTTTGAGCTTTTTGATTGAACAATTATCAACGTTTTTCAGGTAATAATGGAAAGAGTGACCGTACGAATGGCACGGTCCGATCGCCGAACCCCATGGGGGTTCGGTGTCACCGAAGCTCCAGATGGTGCCGTTTTGATTGTCAATGTGAGTTTTTTTTACTAAAAAATTATGTCAGAGATTTCGAAAAAATTTAAAAAATCCTGGAAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>497 368 135</canonical_bands>
                <polymorphic_bands>865 135</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>353 284 184 83 32 30 17 17</canonical_bands>
                <polymorphic_bands>353 284 201 83 32 30 17</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>437 313 184 32 18 16</canonical_bands>
                <polymorphic_bands>437 313 200 32 18</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>316 302 184 132 32 18 16</canonical_bands>
                <polymorphic_bands>316 302 200 132 32 18</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATAGTTATTAAATTGTGGAGTTC</pcr_primer_p1>
		<pcr_primer_p2>ATCTGATTTTCAGTTTTCAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAAATAGTTATTAAATTGTGGAGTTCCCGAAATTTTCTGATTTCAAAACACACATTTTGAAGGGGGACCTTCTTCACAGAGGGCCCTTCTATTCTTCCAAACCCCTCTCGGAGGGCCCTTCTATTGAATGGGGCCCTTCTAATACAGGTTTTACGGTATTTTTTTATTATTTCAGTATGTTTAGTTCGAAGAAAAAACTTTGAATGTTTTTTCAATTCCTAAAGTTCTCTGAAAACTGAAAATCAGAT</canonical_amplicon>
		<polymorphic_amplicon>CAAATAGTTATTAAATTGTGGAGTTCCCGAAATTTTCTGATTTCAAAACACACATTTTGAAGGGGGAYCTTCTTCACAGAGGGCCCTTCTATTCTTCCAAACCCCTCTCGGAGGGCCCTTCTATTGAATGGGGCCCTTCTAATACAGGTTTTACGGTATTTTTTTATTATTTCAGTATGTTTAGTTCGAAGAAAAAACTTTGAATGTTTTTTCAATTCCTAAAGTTCTCTGAAAACTGAAAATCAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30996</snp_id>
        <super_contig>c005701729.Contig1</super_contig>
        <contig_pos>97270</contig_pos>
        <strand>+</strand>
        <context>ATGTTTAGTT[C/T]GAAGMAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTAATACAGGTTTTACGGTATTTTTTTATTATTTCAGTATGTTTAGTT</left_flank>
        <right_flank>GAAGAAAAAACTTTGAATGTTTTTTCAATTCCTAAAGTTCTCTGAAAACT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATATAGCCGAAATCGCTTAATCTCCCCGAATCTATTTTTCTCTGCGTCTCTCTTTTTCTCTATCTCTCTTGTACTAGTATAACCACTTTTTGTAAATGTATACAAGACAACAAAAATAGAAATATCGTAAAACCTCAAGGGCAGCTTTTCTATTGTTCCAAGGCGCCTCCGGAGGGACACTTTTAGTACAGGGGGCCCTTCTATTACAGGGGGTTCTTATATTTTTTCCGAAATTGAAAAATTCAAAATTCATGAAAATCTGTCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATGGAGTTTCGACAAATAGTTATTAAATTGTGGAGTTCCCGAAATTTTCTGATTTCAAAACACACATTTTGAAGGGGGACCTTCTTCACAGAGGGCCCTTCTATTCTTCCAAACCCCTCTCGGAGGGCCCTTCTATTGAATGGGGCCCTTCTAATACAGGTTTTACGGTATTTTTTTATTATTTCAGTATGTTTAGTTCGAAGAAAAAACTTTGAATGTTTTTTCAATTCCTAAAGTTCTCTGAAAACTGAAAATCAGATTTTTCGATTCTCCATTTTTGAAACTTTTCAATTTCTGAGTTCATCGAGCTGTTCAAATTTCCCGTATTCCCATTTTTACAACTTTCTGAATTTTCGAAACATTCTCAACGTTTTGAGCTTTTTGATTGAACAATTATCAACGTTTTTCAGGTAATAATGGAAAGAGTGACCGTACGAATGGCACGGTCCGATCGCCGAACCCCATGGGGGTTCGGTGTCACCGAAGCTCCAGATGGTGCCGTTTTGATTGTCAATGTGAGTTTTTTTTACTAAAAAATTATGTCAGAGATTTCGAAAAAATTTAAAAAATCCTGGAAGTTTCCAGAAACCTTGAAATCAGAAAAATTGGAAGGTTTCCAAAAAAAGTGATATTCTAGAAAATTCTAAAATTCCTAAAAATTTTAGAAAGAACCCAGAATCCTGAAAATTCAAGAAAAGT</canonical>
            <polymorphic>TATATAGCCGAAATCGCTTAATCTCCCCGAATCTATTTTTCTCTGCGTCTCTCTTTTTCTCTATCTCTCTTGTACTAGTATAACCACTTTTTGTAAATGTATACAAGACAACAAAAATAGAAATATCGTAAAACCTCAAGGGCAGCTTTTCTATTGTTCCAAGGCGCCTCCGGAGGGACACTTTTAGTACAGGGGGCCCTTCTATTACAGGGGGTTCTTATATTTTTTCCGAAATTGAAAAATTCAAAATTCATGAAAATCTGTCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATGGAGTTTCGACAAATAGTTATTAAATTGTGGAGTTCCCGAAATTTTCTGATTTCAAAACACACATTTTGAAGGGGGACCTTCTTCACAGAGGGCCCTTCTATTCTTCCAAACCCCTCTCGGAGGGCCCTTCTATTGAATGGGGCCCTTCTAATACAGGTTTTACGGTATTTTTTTATTATTTCAGTATGTTTAGTTYGAAGAAAAAACTTTGAATGTTTTTTCAATTCCTAAAGTTCTCTGAAAACTGAAAATCAGATTTTTCGATTCTCCATTTTTGAAACTTTTCAATTTCTGAGTTCATCGAGCTGTTCAAATTTCCCGTATTCCCATTTTTACAACTTTCTGAATTTTCGAAACATTCTCAACGTTTTGAGCTTTTTGATTGAACAATTATCAACGTTTTTCAGGTAATAATGGAAAGAGTGACCGTACGAATGGCACGGTCCGATCGCCGAACCCCATGGGGGTTCGGTGTCACCGAAGCTCCAGATGGTGCCGTTTTGATTGTCAATGTGAGTTTTTTTTACTAAAAAATTATGTCAGAGATTTCGAAAAAATTTAAAAAATCCTGGAAGTTTCCAGAAACCTTGAAATCAGAAAAATTGGAAGGTTTCCAAAAAAAGTGATATTCTAGAAAATTCTAAAATTCCTAAAAATTTTAGAAAGAACCCAGAATCCTGAAAATTCAAGAAAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>499 198 156 147</canonical_bands>
                <polymorphic_bands>655 198 147</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>296 198 189 146 66 50 40 15</canonical_bands>
                <polymorphic_bands>296 255 198 146 50 40 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTGATTTCAAAACACACATT</pcr_primer_p1>
		<pcr_primer_p2>GAAAAGTTTCAAAAATGGAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTCTGATTTCAAAACACACATTTTGAAGGGGGACCTTCTTCACAGAGGGCCCTTCTATTCTTCCAAACCCCTCTCGGAGGGCCCTTCTATTGAATGGGGCCCTTCTAATACAGGTTTTACGGTATTTTTTTATTATTTCAGTATGTTTAGTTCGAAGAAAAAACTTTGAATGTTTTTTCAATTCCTAAAGTTCTCTGAAAACTGAAAATCAGATTTTTCGATTCTCCATTTTTGAAACTTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTCTGATTTCAAAACACACATTTTGAAGGGGGACCTTCTTCACAGAGGGCCCTTCTATTCTTCCAAACCCCTCTCGGAGGGCCCTTCTATTGAATGGGGCCCTTCTAATACAGGTTTTACGGTATTTTTTTATTATTTCAGTATGTTTAGTTYGAAGAAAAAACTTTGAATGTTTTTTCAATTCCTAAAGTTCTCTGAAAACTGAAAATCAGATTTTTCGATTCTCCATTTTTGAAACTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30997</snp_id>
        <super_contig>c005701729.Contig1</super_contig>
        <contig_pos>97275</contig_pos>
        <strand>+</strand>
        <context>TAGTTYGAAG[A/C]AAAAACTTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATACAGGTTTTACGGTATTTTTTTATTATTTCAGTATGTTTAGTTCGAAG</left_flank>
        <right_flank>AAAAACTTTGAATGTTTTTTCAATTCCTAAAGTTCTCTGAAAACTGAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCGAAATCGCTTAATCTCCCCGAATCTATTTTTCTCTGCGTCTCTCTTTTTCTCTATCTCTCTTGTACTAGTATAACCACTTTTTGTAAATGTATACAAGACAACAAAAATAGAAATATCGTAAAACCTCAAGGGCAGCTTTTCTATTGTTCCAAGGCGCCTCCGGAGGGACACTTTTAGTACAGGGGGCCCTTCTATTACAGGGGGTTCTTATATTTTTTCCGAAATTGAAAAATTCAAAATTCATGAAAATCTGTCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATGGAGTTTCGACAAATAGTTATTAAATTGTGGAGTTCCCGAAATTTTCTGATTTCAAAACACACATTTTGAAGGGGGACCTTCTTCACAGAGGGCCCTTCTATTCTTCCAAACCCCTCTCGGAGGGCCCTTCTATTGAATGGGGCCCTTCTAATACAGGTTTTACGGTATTTTTTTATTATTTCAGTATGTTTAGTTCGAAGAAAAAACTTTGAATGTTTTTTCAATTCCTAAAGTTCTCTGAAAACTGAAAATCAGATTTTTCGATTCTCCATTTTTGAAACTTTTCAATTTCTGAGTTCATCGAGCTGTTCAAATTTCCCGTATTCCCATTTTTACAACTTTCTGAATTTTCGAAACATTCTCAACGTTTTGAGCTTTTTGATTGAACAATTATCAACGTTTTTCAGGTAATAATGGAAAGAGTGACCGTACGAATGGCACGGTCCGATCGCCGAACCCCATGGGGGTTCGGTGTCACCGAAGCTCCAGATGGTGCCGTTTTGATTGTCAATGTGAGTTTTTTTTACTAAAAAATTATGTCAGAGATTTCGAAAAAATTTAAAAAATCCTGGAAGTTTCCAGAAACCTTGAAATCAGAAAAATTGGAAGGTTTCCAAAAAAAGTGATATTCTAGAAAATTCTAAAATTCCTAAAAATTTTAGAAAGAACCCAGAATCCTGAAAATTCAAGAAAAGTAAAAG</canonical>
            <polymorphic>AGCCGAAATCGCTTAATCTCCCCGAATCTATTTTTCTCTGCGTCTCTCTTTTTCTCTATCTCTCTTGTACTAGTATAACCACTTTTTGTAAATGTATACAAGACAACAAAAATAGAAATATCGTAAAACCTCAAGGGCAGCTTTTCTATTGTTCCAAGGCGCCTCCGGAGGGACACTTTTAGTACAGGGGGCCCTTCTATTACAGGGGGTTCTTATATTTTTTCCGAAATTGAAAAATTCAAAATTCATGAAAATCTGTCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATGGAGTTTCGACAAATAGTTATTAAATTGTGGAGTTCCCGAAATTTTCTGATTTCAAAACACACATTTTGAAGGGGGACCTTCTTCACAGAGGGCCCTTCTATTCTTCCAAACCCCTCTCGGAGGGCCCTTCTATTGAATGGGGCCCTTCTAATACAGGTTTTACGGTATTTTTTTATTATTTCAGTATGTTTAGTTCGAAGMAAAAACTTTGAATGTTTTTTCAATTCCTAAAGTTCTCTGAAAACTGAAAATCAGATTTTTCGATTCTCCATTTTTGAAACTTTTCAATTTCTGAGTTCATCGAGCTGTTCAAATTTCCCGTATTCCCATTTTTACAACTTTCTGAATTTTCGAAACATTCTCAACGTTTTGAGCTTTTTGATTGAACAATTATCAACGTTTTTCAGGTAATAATGGAAAGAGTGACCGTACGAATGGCACGGTCCGATCGCCGAACCCCATGGGGGTTCGGTGTCACCGAAGCTCCAGATGGTGCCGTTTTGATTGTCAATGTGAGTTTTTTTTACTAAAAAATTATGTCAGAGATTTCGAAAAAATTTAAAAAATCCTGGAAGTTTCCAGAAACCTTGAAATCAGAAAAATTGGAAGGTTTCCAAAAAAAGTGATATTCTAGAAAATTCTAAAATTCCTAAAAATTTTAGAAAGAACCCAGAATCCTGAAAATTCAAGAAAAGTAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTGATTTCAAAACACACATT</pcr_primer_p1>
		<pcr_primer_p2>GAAAAGTTTCAAAAATGGAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTCTGATTTCAAAACACACATTTTGAAGGGGGACCTTCTTCACAGAGGGCCCTTCTATTCTTCCAAACCCCTCTCGGAGGGCCCTTCTATTGAATGGGGCCCTTCTAATACAGGTTTTACGGTATTTTTTTATTATTTCAGTATGTTTAGTTCGAAGAAAAAACTTTGAATGTTTTTTCAATTCCTAAAGTTCTCTGAAAACTGAAAATCAGATTTTTCGATTCTCCATTTTTGAAACTTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTCTGATTTCAAAACACACATTTTGAAGGGGGACCTTCTTCACAGAGGGCCCTTCTATTCTTCCAAACCCCTCTCGGAGGGCCCTTCTATTGAATGGGGCCCTTCTAATACAGGTTTTACGGTATTTTTTTATTATTTCAGTATGTTTAGTTCGAAGMAAAAACTTTGAATGTTTTTTCAATTCCTAAAGTTCTCTGAAAACTGAAAATCAGATTTTTCGATTCTCCATTTTTGAAACTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30998</snp_id>
        <super_contig>c005701729.Contig1</super_contig>
        <contig_pos>97307</contig_pos>
        <strand>+</strand>
        <context>AATTCCTAAA[A/G]TTCTCTGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTATGTTTAGTTCGAAGAAAAAACTTTGAATGTTTTTTCAATTCCTAAA</left_flank>
        <right_flank>TTCTCTGAAAACTGAAAATCAGATTTTTCGATTCTCCATTTTTGAAACTT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTCTGCGTCTCTCTTTTTCTCTATCTCTCTTGTACTAGTATAACCACTTTTTGTAAATGTATACAAGACAACAAAAATAGAAATATCGTAAAACCTCAAGGGCAGCTTTTCTATTGTTCCAAGGCGCCTCCGGAGGGACACTTTTAGTACAGGGGGCCCTTCTATTACAGGGGGTTCTTATATTTTTTCCGAAATTGAAAAATTCAAAATTCATGAAAATCTGTCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATGGAGTTTCGACAAATAGTTATTAAATTGTGGAGTTCCCGAAATTTTCTGATTTCAAAACACACATTTTGAAGGGGGACCTTCTTCACAGAGGGCCCTTCTATTCTTCCAAACCCCTCTCGGAGGGCCCTTCTATTGAATGGGGCCCTTCTAATACAGGTTTTACGGTATTTTTTTATTATTTCAGTATGTTTAGTTCGAAGAAAAAACTTTGAATGTTTTTTCAATTCCTAAAGTTCTCTGAAAACTGAAAATCAGATTTTTCGATTCTCCATTTTTGAAACTTTTCAATTTCTGAGTTCATCGAGCTGTTCAAATTTCCCGTATTCCCATTTTTACAACTTTCTGAATTTTCGAAACATTCTCAACGTTTTGAGCTTTTTGATTGAACAATTATCAACGTTTTTCAGGTAATAATGGAAAGAGTGACCGTACGAATGGCACGGTCCGATCGCCGAACCCCATGGGGGTTCGGTGTCACCGAAGCTCCAGATGGTGCCGTTTTGATTGTCAATGTGAGTTTTTTTTACTAAAAAATTATGTCAGAGATTTCGAAAAAATTTAAAAAATCCTGGAAGTTTCCAGAAACCTTGAAATCAGAAAAATTGGAAGGTTTCCAAAAAAAGTGATATTCTAGAAAATTCTAAAATTCCTAAAAATTTTAGAAAGAACCCAGAATCCTGAAAATTCAAGAAAAGTAAAAGTTCTTGGAATCCGAGAAATTCTAAAATTCCAG</canonical>
            <polymorphic>TTTCTCTGCGTCTCTCTTTTTCTCTATCTCTCTTGTACTAGTATAACCACTTTTTGTAAATGTATACAAGACAACAAAAATAGAAATATCGTAAAACCTCAAGGGCAGCTTTTCTATTGTTCCAAGGCGCCTCCGGAGGGACACTTTTAGTACAGGGGGCCCTTCTATTACAGGGGGTTCTTATATTTTTTCCGAAATTGAAAAATTCAAAATTCATGAAAATCTGTCAATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATGGAGTTTCGACAAATAGTTATTAAATTGTGGAGTTCCCGAAATTTTCTGATTTCAAAACACACATTTTGAAGGGGGACCTTCTTCACAGAGGGCCCTTCTATTCTTCCAAACCCCTCTCGGAGGGCCCTTCTATTGAATGGGGCCCTTCTAATACAGGTTTTACGGTATTTTTTTATTATTTCAGTATGTTTAGTTCGAAGAAAAAACTTTGAATGTTTTTTCAATTCCTAAARTTCTCTGAAAACTGAAAATCAGATTTTTCGATTCTCCATTTTTGAAACTTTTCAATTTCTGAGTTCATCGAGCTGTTCAAATTTCCCGTATTCCCATTTTTACAACTTTCTGAATTTTCGAAACATTCTCAACGTTTTGAGCTTTTTGATTGAACAATTATCAACGTTTTTCAGGTAATAATGGAAAGAGTGACCGTACGAATGGCACGGTCCGATCGCCGAACCCCATGGGGGTTCGGTGTCACCGAAGCTCCAGATGGTGCCGTTTTGATTGTCAATGTGAGTTTTTTTTACTAAAAAATTATGTCAGAGATTTCGAAAAAATTTAAAAAATCCTGGAAGTTTCCAGAAACCTTGAAATCAGAAAAATTGGAAGGTTTCCAAAAAAAGTGATATTCTAGAAAATTCTAAAATTCCTAAAAATTTTAGAAAGAACCCAGAATCCTGAAAATTCAAGAAAAGTAAAAGTTCTTGGAATCCGAGAAATTCTAAAATTCCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTGATTTCAAAACACACATT</pcr_primer_p1>
		<pcr_primer_p2>GAAAAGTTTCAAAAATGGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTCTGATTTCAAAACACACATTTTGAAGGGGGACCTTCTTCACAGAGGGCCCTTCTATTCTTCCAAACCCCTCTCGGAGGGCCCTTCTATTGAATGGGGCCCTTCTAATACAGGTTTTACGGTATTTTTTTATTATTTCAGTATGTTTAGTTCGAAGAAAAAACTTTGAATGTTTTTTCAATTCCTAAAGTTCTCTGAAAACTGAAAATCAGATTTTTCGATTCTCCATTTTTGAAACTTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTCTGATTTCAAAACACACATTTTGAAGGGGGACCTTCTTCACAGAGGGCCCTTCTATTCTTCCAAACCCCTCTCGGAGGGCCCTTCTATTGAATGGGGCCCTTCTAATACAGGTTTTACGGTATTTTTTTATTATTTCAGTATGTTTAGTTCGAAGAAAAAACTTTGAATGTTTTTTCAATTCCTAAARTTCTCTGAAAACTGAAAATCAGATTTTTCGATTCTCCATTTTTGAAACTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb30999</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>23058</contig_pos>
        <strand>+</strand>
        <context>tttcattcca[A/C]cctaataGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGTTTTTGTGTTATTCACATACCAAAAAATGGACAGTTACTTTCATTCCA</left_flank>
        <right_flank>CCTAATAGAACGTTTTCTTAAAAATATATAGTTCAAAACAGCTGATGCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTACTCGTGAGTGTAAAATAATTTTCCCTCCAGATGACGTTGTAATCCTCCGAATAAGCAATAATAAAAGGGTCAAGTCTGAAGTTTAAGAAACCTGGACAGCTGTCCATCCAAAGCTGTTTAAGACTGAATTGACTTCCCTTAAATAAAGCGGGATCCTATGTTCCACGAGAAGTCGAGTAAGACCTGGACCGCTTTAGCCGCACGGTTTTTCTTCACGCCTCCTCAAACTCCTAATTTGACCCTTTCATTGTTGATTATTAGGAGATATGTAACTTCATCTGGACGGAAATAATTCAACACTATAGATGAGGTAAAATCTGGGCTGAAAAAATACTTTGATTAGCTACCAGCTGCCTTTTGGAGGGATGGTATCTAAAAGTTACCTGAATGTTGTCAACATGTCGTACACCATGACAGTGCGTACTGTCAATCTTGAGTAATTCTTGTTTTTGTGTTATTCACATACCAAAAAATGGACAGTTACTTTCATTCCAACCTAATAGAACGTTTTCTTAAAAATATATAGTTCAAAACAGCTGATGCTTCGTGAGCACAAGAAATAAAAACAAAGCTTTTGATAACTTTTTACAACCAAAATGATATTTAAATGACTTCAACAGCCTGTTTCTCTCATTTGAATTTAGTCTTTCTGTTCTTGGTCCTTTTTTGGCTCGGAGGCAAGGTTATCACTACGGGATTCTAACAAAAAATATAAAAGCTCTGAAAGTCTACTGGCAGTTAGAAACGTGAAAATCCTCCATTCTGGATGTGAGTTTTCTGAAACGTTGTTGCTATTATAGAGATATGGGTAAGGTCTGCAAGTTCGAGTAAAAATCTGGACAAATCTGTATAAATATTGGGGGAATCGGGAAACATGAATCAATCAGTTTCTCGGTCGAAATTGATTTTCCATCGAAAGTTTGGCGGGAAAGCCTCATTATTTGAAATTGCAATTCCTTTTCAATTTTCAGAGTTTCATAATCCATAGGTTTTTT</canonical>
            <polymorphic>ATCTACTCGTGAGTGTAAAATAATTTTCCCTCCAGATGACGTTGTAATCCTCCGAATAAGCAATAATAAAAGGGTCAAGTCTGAAGTTTAAGAAACCTGGACAGCTGTCCATCCAAAGCTGTTTAAGACTGAATTGACTTCCCTTAAATAAAGCGGGATCCTATGTTCCACGAGAAGTCGAGTAAGACCTGGACCGCTTTAGCCGCACGGTTTTTCTTCACGCCTCCTCAAACTCCTAATTTGACCCTTTCATTGTTGATTATTAGGAGATATGTAACTTCATCTGGACGGAAATAATTCAACACTATAGATGAGGTAAAATCTGGGCTGAAAAAATACTTTGATTAGCTACCAGCTGCCTTTTGGAGGGATGGTATCTAAAAGTTACCTGAATGTTGTCAACATGTCGTACACCATGACAGTGCGTACTGTCAATCTTGAGTAATTCTTGTTTTTGTGTTATTCACATACCAAAAAATGGACAGTTACTTTCATTCCAMCCTAATAGAACGTTTTCTTAAAAATATATAGTTCAAAACAGCTGATGCTTCGTGAGCACAAGAAATAAAAACAAAGCTTTTGATAACTTTTTACAACCAAAATGATATTTAAATGACTTCAACAGCCTGTTTCTCTCATTTGAATTTAGTCTTTCTGTTCTTGGTCCTTTTTTGGCTCGGAGGCAAGGTTATCACTACGGGATTCTAACAAAAAATATAAAAGCTCTGAAAGTCTACTGGCAGTTAGAAACGTGAAAATCCTCCATTCTGGATGTGAGTTTTCTGAAACGTTGTTGCTATTATAGAGATATGGGTAAGGTCTGCAAGTTCGAGTAAAAATCTGGACAAATCTGTATAAATATTGGGGGAATCGGGAAACATGAATCAATCAGTTTCTCGGTCGAAATTGATTTTCCATCGAAAGTTTGGCGGGAAAGCCTCATTATTTGAAATTGCAATTCCTTTTCAATTTTCAGAGTTTCATAATCCATAGGTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGCGAACATTCCTACAAAGT</pcr_primer_p1>
		<pcr_primer_p2>AAGCTTTGTTTTTATTTCTTGTG</pcr_primer_p2>
		<pcr_amplicon_size>788</pcr_amplicon_size>
		<canonical_amplicon>AACCTAATAGAACGTTTTCTTAAAAATATATAGTTCAAAACAGCTGATGCTTCGTGAGCACAAGAAATAAAAACAAAGCTT</canonical_amplicon>
		<polymorphic_amplicon>AMCCTAATAGAACGTTTTCTTAAAAATATATAGTTCAAAACAGCTGATGCTTCGTGAGCACAAGAAATAAAAACAAAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31000</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>23097</contig_pos>
        <strand></strand>
        <context>TAGTTCAAAA[C/A]AGCTGATGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CTTTCATTCCAACCTAATAGAACGTTTTCTTAAAAATATATAGTTCAAAA</left_flank>
        <right_flank>AGCTGATGCTTCGTGAGCACAAGAAATAAAAACAAAGCTTTTGATAACTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTGTAATCCTCCGAATAAGCAATAATAAAAGGGTCAAGTCTGAAGTTTAAGAAACCTGGACAGCTGTCCATCCAAAGCTGTTTAAGACTGAATTGACTTCCCTTAAATAAAGCGGGATCCTATGTTCCACGAGAAGTCGAGTAAGACCTGGACCGCTTTAGCCGCACGGTTTTTCTTCACGCCTCCTCAAACTCCTAATTTGACCCTTTCATTGTTGATTATTAGGAGATATGTAACTTCATCTGGACGGAAATAATTCAACACTATAGATGAGGTAAAATCTGGGCTGAAAAAATACTTTGATTAGCTACCAGCTGCCTTTTGGAGGGATGGTATCTAAAAGTTACCTGAATGTTGTCAACATGTCGTACACCATGACAGTGCGTACTGTCAATCTTGAGTAATTCTTGTTTTTGTGTTATTCACATACCAAAAAATGGACAGTTACTTTCATTCCAACCTAATAGAACGTTTTCTTAAAAATATATAGTTCAAAACAGCTGATGCTTCGTGAGCACAAGAAATAAAAACAAAGCTTTTGATAACTTTTTACAACCAAAATGATATTTAAATGACTTCAACAGCCTGTTTCTCTCATTTGAATTTAGTCTTTCTGTTCTTGGTCCTTTTTTGGCTCGGAGGCAAGGTTATCACTACGGGATTCTAACAAAAAATATAAAAGCTCTGAAAGTCTACTGGCAGTTAGAAACGTGAAAATCCTCCATTCTGGATGTGAGTTTTCTGAAACGTTGTTGCTATTATAGAGATATGGGTAAGGTCTGCAAGTTCGAGTAAAAATCTGGACAAATCTGTATAAATATTGGGGGAATCGGGAAACATGAATCAATCAGTTTCTCGGTCGAAATTGATTTTCCATCGAAAGTTTGGCGGGAAAGCCTCATTATTTGAAATTGCAATTCCTTTTCAATTTTCAGAGTTTCATAATCCATAGGTTTTTTTAATCGGGATCAGTTGAGACCAAACGAGACCATGGAGAA</canonical>
            <polymorphic>CGTTGTAATCCTCCGAATAAGCAATAATAAAAGGGTCAAGTCTGAAGTTTAAGAAACCTGGACAGCTGTCCATCCAAAGCTGTTTAAGACTGAATTGACTTCCCTTAAATAAAGCGGGATCCTATGTTCCACGAGAAGTCGAGTAAGACCTGGACCGCTTTAGCCGCACGGTTTTTCTTCACGCCTCCTCAAACTCCTAATTTGACCCTTTCATTGTTGATTATTAGGAGATATGTAACTTCATCTGGACGGAAATAATTCAACACTATAGATGAGGTAAAATCTGGGCTGAAAAAATACTTTGATTAGCTACCAGCTGCCTTTTGGAGGGATGGTATCTAAAAGTTACCTGAATGTTGTCAACATGTCGTACACCATGACAGTGCGTACTGTCAATCTTGAGTAATTCTTGTTTTTGTGTTATTCACATACCAAAAAATGGACAGTTACTTTCATTCCAACCTAATAGAACGTTTTCTTAAAAATATATAGTTCAAAAMAGCTGATGCTTCGTGAGCACAAGAAATAAAAACAAAGCTTTTGATAACTTTTTACAACCAAAATGATATTTAAATGACTTCAACAGCCTGTTTCTCTCATTTGAATTTAGTCTTTCTGTTCTTGGTCCTTTTTTGGCTCGGAGGCAAGGTTATCACTACGGGATTCTAACAAAAAATATAAAAGCTCTGAAAGTCTACTGGCAGTTAGAAACGTGAAAATCCTCCATTCTGGATGTGAGTTTTCTGAAACGTTGTTGCTATTATAGAGATATGGGTAAGGTCTGCAAGTTCGAGTAAAAATCTGGACAAATCTGTATAAATATTGGGGGAATCGGGAAACATGAATCAATCAGTTTCTCGGTCGAAATTGATTTTCCATCGAAAGTTTGGCGGGAAAGCCTCATTATTTGAAATTGCAATTCCTTTTCAATTTTCAGAGTTTCATAATCCATAGGTTTTTTTAATCGGGATCAGTTGAGACCAAACGAGACCATGGAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>498 251 186 65</canonical_bands>
                <polymorphic_bands>684 251 65</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>498 251 186 65</canonical_bands>
                <polymorphic_bands>684 251 65</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAGCGAACATTCCTACAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTGGTTGTAAAAAGTTATCAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>809</pcr_amplicon_size>
		<canonical_amplicon>ACAGCTGATGCTTCGTGAGCACAAGAAATAAAAACAAAGCTTTTGATAACTTTTTACAACCAA</canonical_amplicon>
		<polymorphic_amplicon>AMAGCTGATGCTTCGTGAGCACAAGAAATAAAAACAAAGCTTTTGATAACTTTTTACAACCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31001</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>23237</contig_pos>
        <strand>+</strand>
        <context>TTTTTGGCTC[A/G]GAGGCAAGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTCTCTCATTTGAATTTAGTCTTTCTGTTCTTGGTCCTTTTTTGGCTC</left_flank>
        <right_flank>GAGGCAAGGTTATCACTACGGGATTCTAACAAAAAATATAAAAGCTCTGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTAAGACCTGGACCGCTTTAGCCGCACGGTTTTTCTTCACGCCTCCTCAAACTCCTAATTTGACCCTTTCATTGTTGATTATTAGGAGATATGTAACTTCATCTGGACGGAAATAATTCAACACTATAGATGAGGTAAAATCTGGGCTGAAAAAATACTTTGATTAGCTACCAGCTGCCTTTTGGAGGGATGGTATCTAAAAGTTACCTGAATGTTGTCAACATGTCGTACACCATGACAGTGCGTACTGTCAATCTTGAGTAATTCTTGTTTTTGTGTTATTCACATACCAAAAAATGGACAGTTACTTTCATTCCAACCTAATAGAACGTTTTCTTAAAAATATATAGTTCAAAACAGCTGATGCTTCGTGAGCACAAGAAATAAAAACAAAGCTTTTGATAACTTTTTACAACCAAAATGATATTTAAATGACTTCAACAGCCTGTTTCTCTCATTTGAATTTAGTCTTTCTGTTCTTGGTCCTTTTTTGGCTCGGAGGCAAGGTTATCACTACGGGATTCTAACAAAAAATATAAAAGCTCTGAAAGTCTACTGGCAGTTAGAAACGTGAAAATCCTCCATTCTGGATGTGAGTTTTCTGAAACGTTGTTGCTATTATAGAGATATGGGTAAGGTCTGCAAGTTCGAGTAAAAATCTGGACAAATCTGTATAAATATTGGGGGAATCGGGAAACATGAATCAATCAGTTTCTCGGTCGAAATTGATTTTCCATCGAAAGTTTGGCGGGAAAGCCTCATTATTTGAAATTGCAATTCCTTTTCAATTTTCAGAGTTTCATAATCCATAGGTTTTTTTAATCGGGATCAGTTGAGACCAAACGAGACCATGGAGAAGGAAAATTTGGTCGAAAAGAAACAAAAATACATCTATACCAGGGAATCTGGGAGCAGAACATAGCACAAGAAATGAGAAAAATTTTTGGCGAGAATATGGGGTTCATAAAGCTTAATGAATGGGCTCAAATAGCAGCACA</canonical>
            <polymorphic>GAGTAAGACCTGGACCGCTTTAGCCGCACGGTTTTTCTTCACGCCTCCTCAAACTCCTAATTTGACCCTTTCATTGTTGATTATTAGGAGATATGTAACTTCATCTGGACGGAAATAATTCAACACTATAGATGAGGTAAAATCTGGGCTGAAAAAATACTTTGATTAGCTACCAGCTGCCTTTTGGAGGGATGGTATCTAAAAGTTACCTGAATGTTGTCAACATGTCGTACACCATGACAGTGCGTACTGTCAATCTTGAGTAATTCTTGTTTTTGTGTTATTCACATACCAAAAAATGGACAGTTACTTTCATTCCAACCTAATAGAACGTTTTCTTAAAAATATATAGTTCAAAACAGCTGATGCTTCGTGAGCACAAGAAATAAAAACAAAGCTTTTGATAACTTTTTACAACCAAAATGATATTTAAATGACTTCAACAGCCTGTTTCTCTCATTTGAATTTAGTCTTTCTGTTCTTGGTCCTTTTTTGGCTCRGAGGCAAGGTTATCACTACGGGATTCTAACAAAAAATATAAAAGCTCTGAAAGTCTACTGGCAGTTAGAAACGTGAAAATCCTCCATTCTGGATGTGAGTTTTCTGAAACGTTGTTGCTATTATAGAGATATGGGTAAGGTCTGCAAGTTCGAGTAAAAATCTGGACAAATCTGTATAAATATTGGGGGAATCGGGAAACATGAATCAATCAGTTTCTCGGTCGAAATTGATTTTCCATCGAAAGTTTGGCGGGAAAGCCTCATTATTTGAAATTGCAATTCCTTTTCAATTTTCAGAGTTTCATAATCCATAGGTTTTTTTAATCGGGATCAGTTGAGACCAAACGAGACCATGGAGAAGGAAAATTTGGTCGAAAAGAAACAAAAATACATCTATACCAGGGAATCTGGGAGCAGAACATAGCACAAGAAATGAGAAAAATTTTTGGCGAGAATATGGGGTTCATAAAGCTTAATGAATGGGCTCAAATAGCAGCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCACAAGAAATAAAAACAAAG</pcr_primer_p1>
		<pcr_primer_p2>TATAATAGCAACAACGTTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAGCACAAGAAATAAAAACAAAGCTTTTGATAACTTTTTACAACCAAAATGATATTTAAATGACTTCAACAGCCTGTTTCTCTCATTTGAATTTAGTCTTTCTGTTCTTGGTCCTTTTTTGGCTCGGAGGCAAGGTTATCACTACGGGATTCTAACAAAAAATATAAAAGCTCTGAAAGTCTACTGGCAGTTAGAAACGTGAAAATCCTCCATTCTGGATGTGAGTTTTCTGAAACGTTGTTGCTATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAGCACAAGAAATAAAAACAAAGCTTTTGATAACTTTTTACAACCAAAATGATATTTAAATGACTTCAACAGCCTGTTTCTCTCATTTGAATTTAGTCTTTCTGTTCTTGGTCCTTTTTTGGCTCRGAGGCAAGGTTATCACTACGGGATTCTAACAAAAAATATAAAAGCTCTGAAAGTCTACTGGCAGTTAGAAACGTGAAAATCCTCCATTCTGGATGTGAGTTTTCTGAAACGTTGTTGCTATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31002</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>23261</contig_pos>
        <strand>+</strand>
        <context>CACTACGGGA[A/T]TCTAACAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCTGTTCTTGGTCCTTTTTTGGCTCGGAGGCAAGGTTATCACTACGGGA</left_flank>
        <right_flank>TCTAACAAAAAATATAAAAGCTCTGAAAGTCTACTGGCAGTTAGAAACGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCACGGTTTTTCTTCACGCCTCCTCAAACTCCTAATTTGACCCTTTCATTGTTGATTATTAGGAGATATGTAACTTCATCTGGACGGAAATAATTCAACACTATAGATGAGGTAAAATCTGGGCTGAAAAAATACTTTGATTAGCTACCAGCTGCCTTTTGGAGGGATGGTATCTAAAAGTTACCTGAATGTTGTCAACATGTCGTACACCATGACAGTGCGTACTGTCAATCTTGAGTAATTCTTGTTTTTGTGTTATTCACATACCAAAAAATGGACAGTTACTTTCATTCCAACCTAATAGAACGTTTTCTTAAAAATATATAGTTCAAAACAGCTGATGCTTCGTGAGCACAAGAAATAAAAACAAAGCTTTTGATAACTTTTTACAACCAAAATGATATTTAAATGACTTCAACAGCCTGTTTCTCTCATTTGAATTTAGTCTTTCTGTTCTTGGTCCTTTTTTGGCTCGGAGGCAAGGTTATCACTACGGGATTCTAACAAAAAATATAAAAGCTCTGAAAGTCTACTGGCAGTTAGAAACGTGAAAATCCTCCATTCTGGATGTGAGTTTTCTGAAACGTTGTTGCTATTATAGAGATATGGGTAAGGTCTGCAAGTTCGAGTAAAAATCTGGACAAATCTGTATAAATATTGGGGGAATCGGGAAACATGAATCAATCAGTTTCTCGGTCGAAATTGATTTTCCATCGAAAGTTTGGCGGGAAAGCCTCATTATTTGAAATTGCAATTCCTTTTCAATTTTCAGAGTTTCATAATCCATAGGTTTTTTTAATCGGGATCAGTTGAGACCAAACGAGACCATGGAGAAGGAAAATTTGGTCGAAAAGAAACAAAAATACATCTATACCAGGGAATCTGGGAGCAGAACATAGCACAAGAAATGAGAAAAATTTTTGGCGAGAATATGGGGTTCATAAAGCTTAATGAATGGGCTCAAATAGCAGCACAAGTATATCTAAAATATTAGGGAAT</canonical>
            <polymorphic>CGCACGGTTTTTCTTCACGCCTCCTCAAACTCCTAATTTGACCCTTTCATTGTTGATTATTAGGAGATATGTAACTTCATCTGGACGGAAATAATTCAACACTATAGATGAGGTAAAATCTGGGCTGAAAAAATACTTTGATTAGCTACCAGCTGCCTTTTGGAGGGATGGTATCTAAAAGTTACCTGAATGTTGTCAACATGTCGTACACCATGACAGTGCGTACTGTCAATCTTGAGTAATTCTTGTTTTTGTGTTATTCACATACCAAAAAATGGACAGTTACTTTCATTCCAACCTAATAGAACGTTTTCTTAAAAATATATAGTTCAAAACAGCTGATGCTTCGTGAGCACAAGAAATAAAAACAAAGCTTTTGATAACTTTTTACAACCAAAATGATATTTAAATGACTTCAACAGCCTGTTTCTCTCATTTGAATTTAGTCTTTCTGTTCTTGGTCCTTTTTTGGCTCGGAGGCAAGGTTATCACTACGGGAWTCTAACAAAAAATATAAAAGCTCTGAAAGTCTACTGGCAGTTAGAAACGTGAAAATCCTCCATTCTGGATGTGAGTTTTCTGAAACGTTGTTGCTATTATAGAGATATGGGTAAGGTCTGCAAGTTCGAGTAAAAATCTGGACAAATCTGTATAAATATTGGGGGAATCGGGAAACATGAATCAATCAGTTTCTCGGTCGAAATTGATTTTCCATCGAAAGTTTGGCGGGAAAGCCTCATTATTTGAAATTGCAATTCCTTTTCAATTTTCAGAGTTTCATAATCCATAGGTTTTTTTAATCGGGATCAGTTGAGACCAAACGAGACCATGGAGAAGGAAAATTTGGTCGAAAAGAAACAAAAATACATCTATACCAGGGAATCTGGGAGCAGAACATAGCACAAGAAATGAGAAAAATTTTTGGCGAGAATATGGGGTTCATAAAGCTTAATGAATGGGCTCAAATAGCAGCACAAGTATATCTAAAATATTAGGGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>498 201 167 120 14</canonical_bands>
                <polymorphic_bands>665 201 120 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGCACAAGAAATAAAAACAAAG</pcr_primer_p1>
		<pcr_primer_p2>TATAATAGCAACAACGTTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAGCACAAGAAATAAAAACAAAGCTTTTGATAACTTTTTACAACCAAAATGATATTTAAATGACTTCAACAGCCTGTTTCTCTCATTTGAATTTAGTCTTTCTGTTCTTGGTCCTTTTTTGGCTCGGAGGCAAGGTTATCACTACGGGATTCTAACAAAAAATATAAAAGCTCTGAAAGTCTACTGGCAGTTAGAAACGTGAAAATCCTCCATTCTGGATGTGAGTTTTCTGAAACGTTGTTGCTATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAGCACAAGAAATAAAAACAAAGCTTTTGATAACTTTTTACAACCAAAATGATATTTAAATGACTTCAACAGCCTGTTTCTCTCATTTGAATTTAGTCTTTCTGTTCTTGGTCCTTTTTTGGCTCGGAGGCAAGGTTATCACTACGGGAWTCTAACAAAAAATATAAAAGCTCTGAAAGTCTACTGGCAGTTAGAAACGTGAAAATCCTCCATTCTGGATGTGAGTTTTCTGAAACGTTGTTGCTATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31003</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>47540</contig_pos>
        <strand>+</strand>
        <context>TATTTTCTTT[A/T]AGAGAATTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTTTTCTTTGGATGTTTTTCTTTCGGTTTTCAAATTAGTTATTTTCTTT</left_flank>
        <right_flank>AGAGAATTCAAGTTGTTTTGCTGTCACCAGCCGAGTTGGACAACCAAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTTCATATCCTCATCAGCTCTCTTCCGCCAGCTTCTTCTCTTGTTCACTGTACTCGCCTGCCTCATTTTCACGGGAATGTGCAGTATTGAGATTTGCAAAGAGCTCGCGCCAAACAAATTGATCTCTTCACCTCTTTCTACTTTGTTATGGTCACTTTCTCCACAGTAGGATACGGAGATTGGTACCCAGACTACTGGGCGTCTCAGCTATGCGTCGTGATTTTGATCTGCGTGGCTTTGGGTTTGATTCCAAAACAACTCGACGAACTTGGACAGACATGGTCGGAGAGACAAAAGTCTGGAACTGATTTCAGCAGTTGGAATGGTGTCGAATCCCATGTGGTGGTTACTATCACCACTTTGGAAGTAGAATTCATTCGAGACTTTTTGGAAGAGTTCTACGCGCACCCAGAAAACCAGGTGAACCTTTTTGTGTTTTTTTTGGATGTTTTTCTTTGGATGTTTTTCTTTCGGTTTTCAAATTAGTTATTTTCTTTCAGAGAATTCAAGTTGTTTTGCTGTCACCAGCCGAGTTGGACAACCAAACTCGCATGTTGTTGAAAATACCACTTTGGAACAATCGGGTTCATTACGTGCGCGGAAGTTCTTTGAGAGATGAAGACTTGGAGAGGTTTGTTTTGTTTTGACTGAAATATACGTATTTTTCAGTTAATTTTTTTCAATATTCAGGAGTCTAAAGCTCGGCTTTCAAGTTTCCTTTTTTTTTGAAAGTTTAGGAGCGTGTAAAAAAGACCTAGATTAAAAATTATGCGCTCACAGAATTTTTTGAAAATTCATAGTTTTCGGATATTCGTCGATTTCTTAAAGACACTTCTTGTTCACTCGTTTTTTGTTCACTAAATGTGGAAAACAGACGTAATTCAGAAATTGGCATATATCGGAAAAATTAGGTATTTTCAAAAAATGCTGTAAATGCGCAGTTCTTAATCTAGGTCTGTTTTACACCTATCGCAAAATGATCGGAAACTTGATAGCCG</canonical>
            <polymorphic>TCCTTCATATCCTCATCAGCTCTCTTCCGCCAGCTTCTTCTCTTGTTCACTGTACTCGCCTGCCTCATTTTCACGGGAATGTGCAGTATTGAGATTTGCAAAGAGCTCGCGCCAAACAAATTGATCTCTTCACCTCTTTCTACTTTGTTATGGTCACTTTCTCCACAGTAGGATACGGAGATTGGTACCCAGACTACTGGGCGTCTCAGCTATGCGTCGTGATTTTGATCTGCGTGGCTTTGGGTTTGATTCCAAAACAACTCGACGAACTTGGACAGACATGGTCGGAGAGACAAAAGTCTGGAACTGATTTCAGCAGTTGGAATGGTGTCGAATCCCATGTGGTGGTTACTATCACCACTTTGGAAGTAGAATTCATTCGAGACTTTTTGGAAGAGTTCTACGCGCACCCAGAAAACCAGGTGAACCTTTTTGTGTTTTTTTTGGATGTTTTTCTTTGGATGTTTTTCTTTCGGTTTTCAAATTAGTTATTTTCTTTWAGAGAATTCAAGTTGTTTTGCTGTCACCAGCCGAGTTGGACAACCAAACTCGCATGTTGTTGAAAATACCACTTTGGAACAATCGGGTTCATTACGTGCGCGGAAGTTCTTTGAGAGATGAAGACTTGGAGAGGTTTGTTTTGTTTTGACTGAAATATACGTATTTTTCAGTTAATTTTTTTCAATATTCAGGAGTCTAAAGCTCGGCTTTCAAGTTTCCTTTTTTTTTGAAAGTTTAGGAGCGTGTAAAAAAGACCTAGATTAAAAATTATGCGCTCACAGAATTTTTTGAAAATTCATAGTTTTCGGATATTCGTCGATTTCTTAAAGACACTTCTTGTTCACTCGTTTTTTGTTCACTAAATGTGGAAAACAGACGTAATTCAGAAATTGGCATATATCGGAAAAATTAGGTATTTTCAAAAAATGCTGTAAATGCGCAGTTCTTAATCTAGGTCTGTTTTACACCTATCGCAAAATGATCGGAAACTTGATAGCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>307 287 214 82 78 17 15</canonical_bands>
                <polymorphic_bands>521 287 82 78 17 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACTTTTTGGAAGAGTTCTACG</pcr_primer_p1>
		<pcr_primer_p2>CTCCAAGTCTTCATCTCTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGACTTTTTGGAAGAGTTCTACGCGCACCCAGAAAACCAGGTGAACCTTTTTGTGTTTTTTTTGGATGTTTTTCTTTGGATGTTTTTCTTTCGGTTTTCAAATTAGTTATTTTCTTTCAGAGAATTCAAGTTGTTTTGCTGTCACCAGCCGAGTTGGACAACCAAACTCGCATGTTGTTGAAAATACCACTTTGGAACAATCGGGTTCATTACGTGCGCGGAAGTTCTTTGAGAGATGAAGACTTGGAG</canonical_amplicon>
		<polymorphic_amplicon>AGACTTTTTGGAAGAGTTCTACGCGCACCCAGAAAACCAGGTGAACCTTTTTGTGTTTTTTTTGGATGTTTTTCTTTGGATGTTTTTCTTTCGGTTTTCAAATTAGTTATTTTCTTTWAGAGAATTCAAGTTGTTTTGCTGTCACCAGCCGAGTTGGACAACCAAACTCGCATGTTGTTGAAAATACCACTTTGGAACAATCGGGTTCATTACGTGCGCGGAAGTTCTTTGAGAGATGAAGACTTGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31004</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>55277</contig_pos>
        <strand></strand>
        <context>ctgatgaaaa[C/T]gtcatcataa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTATCTCGATTTTTGTGATTGATATCGAAAATTGGCTAACTGATGAAAA</left_flank>
        <right_flank>GTCATCATAATATCACAACTATTTTATTAGTTTAAATGTTTTCGATATCT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTCGAGGAAATTGAAGTGTTGGAAGAAACTGTAAAAGATGGCACTGAAAAAAATAAGTGTGCGTAGAGAATTTGAGCGAGAAATTTGAGTAGAGGGTGGACTGGGAAGAAAAAATCAAGTTGGGAAAAATGGAATACTCGTACAATGGTTCAAGCGATTTGAAAATTTTTTAGAGAAACAATGTGTGGGTGTGTTTTGTCGACATTATATATATAATACATGTGTGTTTTAGAATTAAGTAGTCTTGTGAGAGAGATAATAATACACTTTAGGAGGGGTTTCACCGATAGTTACGTTGTTGGTAATCGTCTGTGTAGGTGTAGTTGGCATACCCCCTGAAAAAAAAACGTTTAAAATTAAAAAAAAAACCCCCCCCCCCCATTTTATAAATGGTGTTGCCGTTTTTTCTCTAATATAAGCGCACCCAAACCATCAATTTTGAGCTCAATTATCTCGATTTTTGTGATTGATATCGAAAATTGGCTAACTGATGAAAACGTCATCATAATATCACAACTATTTTATTAGTTTAAATGTTTTCGATATCTTTGACAGGAATTGAGATAATTGAGCGGATAGTAGAGGTTTCGGTTGGCCTAATAGAGGAAATACGGTATGGACATTAAAAAAACTTACGGCTTGGGCCTTGTATCATATGTATCCGTTATAAATGAAGACATGTGATGTGTTTCTGATGGTGGCTCCACGATACTGTAACTTGATACTCTTAAATTCTTCAAAAAAAACCCCTTCAAATTACTATTTCGGGAAGGCATGCATTTTTGAGTAGAGGCCAATGAGCGAATTTGATATCATAACGATTGGGACCAAAAGCACGAGACATATCAGCATACACATCCAAGTGCCATTCTGGAAATTCAAATTTATTTCAGGTCCCCTTGATTCCCCATTTTTTTTAAATCCAAAAAAAAGACGTTTCTTACATATGGGTCGATGGTATAATTGCAAATCGCTGCTGTTGTTTGTTTGGCAATTTG</canonical>
            <polymorphic>GTTTCGAGGAAATTGAAGTGTTGGAAGAAACTGTAAAAGATGGCACTGAAAAAAATAAGTGTGCGTAGAGAATTTGAGCGAGAAATTTGAGTAGAGGGTGGACTGGGAAGAAAAAATCAAGTTGGGAAAAATGGAATACTCGTACAATGGTTCAAGCGATTTGAAAATTTTTTAGAGAAACAATGTGTGGGTGTGTTTTGTCGACATTATATATATAATACATGTGTGTTTTAGAATTAAGTAGTCTTGTGAGAGAGATAATAATACACTTTAGGAGGGGTTTCACCGATAGTTACGTTGTTGGTAATCGTCTGTGTAGGTGTAGTTGGCATACCCCCTGAAAAAAAAACGTTTAAAATTAAAAAAAAAACCCCCCCCCCCCATTTTATAAATGGTGTTGCCGTTTTTTCTCTAATATAAGCGCACCCAAACCATCAATTTTGAGCTCAATTATCTCGATTTTTGTGATTGATATCGAAAATTGGCTAACTGATGAAAAYGTCATCATAATATCACAACTATTTTATTAGTTTAAATGTTTTCGATATCTTTGACAGGAATTGAGATAATTGAGCGGATAGTAGAGGTTTCGGTTGGCCTAATAGAGGAAATACGGTATGGACATTAAAAAAACTTACGGCTTGGGCCTTGTATCATATGTATCCGTTATAAATGAAGACATGTGATGTGTTTCTGATGGTGGCTCCACGATACTGTAACTTGATACTCTTAAATTCTTCAAAAAAAACCCCTTCAAATTACTATTTCGGGAAGGCATGCATTTTTGAGTAGAGGCCAATGAGCGAATTTGATATCATAACGATTGGGACCAAAAGCACGAGACATATCAGCATACACATCCAAGTGCCATTCTGGAAATTCAAATTTATTTCAGGTCCCCTTGATTCCCCATTTTTTTTAAATCCAAAAAAAAGACGTTTCTTACATATGGGTCGATGGTATAATTGCAAATCGCTGCTGTTGTTTGTTTGGCAATTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>437 295 150 64 54</canonical_bands>
                <polymorphic_bands>587 295 64 54</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGTAGGTGTAGTTGGCATAC</pcr_primer_p1>
		<pcr_primer_p2>CCAACCGAAACCTCTACTATC</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>TGTGTAGGTGTAGTTGGCATACCCCCTGAAAAAAAAACGTTTAAAATTAAAAAAAAAACCCCCCCCCCCCATTTTATAAATGGTGTTGCCGTTTTTTCTCTAATATAAGCGCACCCAAACCATCAATTTTGAGCTCAATTATCTCGATTTTTGTGATTGATATCGAAAATTGGCTAACTGATGAAAACGTCATCATAATATCACAACTATTTTATTAGTTTAAATGTTTTCGATATCTTTGACAGGAATTGAGATAATTGAGCGGATAGTAGAGGTTTCGGTTGG</canonical_amplicon>
		<polymorphic_amplicon>TGTGTAGGTGTAGTTGGCATACCCCCTGAAAAAAAAACGTTTAAAATTAAAAAAAAAACCCCCCCCCCCCATTTTATAAATGGTGTTGCCGTTTTTTCTCTAATATAAGCGCACCCAAACCATCAATTTTGAGCTCAATTATCTCGATTTTTGTGATTGATATCGAAAATTGGCTAACTGATGAAAAYGTCATCATAATATCACAACTATTTTATTAGTTTAAATGTTTTCGATATCTTTGACAGGAATTGAGATAATTGAGCGGATAGTAGAGGTTTCGGTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31005</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>86704</contig_pos>
        <strand>+</strand>
        <context>ATGGTAATAC[A/T]TCAATTCCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCTGCATATAATGAAAATCGCAACACCTTTCATTAAACAATGGTAATAC</left_flank>
        <right_flank>TCAATTCCTGACAGATCTCATCACATCGCCCTTGATAAGATCCGCCAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGATATTTGCAAAATTCGAAATTTCGAGAACCTGGTATCCAATTTTTAGAAGTTCGGAGACATTTTACCACCAAAATTGCTTTATTGTGAAAATCTACAAAAATGATTTTTTAGTTCTCTAATGTGCTCTTCCTGATGAACAGTTTTCTTAATTTTCTATTTTTAAATTGCGTTCTATGAGAAAAAACTATTCTTCTAACATTTTTCTTTGAGTAAAACTAGAATTATCGTTCTGAAATTTGAAAAGTTCTAAATTGTTATTTTGTTGGTTTTTTAAAAAGTTTACGACTATCAAGCTGTGTTCTACAAGAAGACGACGTATTTGAAATCTTTAAAACAAATTTTGAACTCTGAAACCTCTTAATTTGCTTGTATTATGTGGCGAAAGGTCCCGGAGCCCTTTAAAAGGTAAAGCTGACCAAATTTTCAAAAATTCTAAGCTCTATCATCTGCATATAATGAAAATCGCAACACCTTTCATTAAACAATGGTAATACATCAATTCCTGACAGATCTCATCACATCGCCCTTGATAAGATCCGCCAAACACCAAGTACCACCACTAAAACTCGGAACACAAATTGTATGCGAAGGTTATATGCAAAAACTGGCGGTAGAAGTATTCAGAAAGAACACATTTGACGACAGTCGGCGCTAAAACGGAGGTGAGAGAGTGAGAGAAAAAGAAACGAATGGTGGTAATCGAAAGGACAATACAAGAAGACGAAGAAGAAGAAAAACGGACGGGGCCCTACGCAACCGACCGATGGATCGAAACGGAGAAATATGGTCAAGCAGAGGGAGGGTGGTGGTGCCGTTGTCTCTGCGCGCTCGACCGTTTGACCGGTGTATGTGATATCGATCGACTGTGCCCGCGCCTCTCCCACCACTCTCTCACCATACCTTGAATCACTCTCACTCTTCGGCTCTTTTGACCGATAAACGCAAGAAGAAAGTATGCAAATAAACTCTAAGCAGGGAGACACTACTATATTTGC</canonical>
            <polymorphic>AAAGATATTTGCAAAATTCGAAATTTCGAGAACCTGGTATCCAATTTTTAGAAGTTCGGAGACATTTTACCACCAAAATTGCTTTATTGTGAAAATCTACAAAAATGATTTTTTAGTTCTCTAATGTGCTCTTCCTGATGAACAGTTTTCTTAATTTTCTATTTTTAAATTGCGTTCTATGAGAAAAAACTATTCTTCTAACATTTTTCTTTGAGTAAAACTAGAATTATCGTTCTGAAATTTGAAAAGTTCTAAATTGTTATTTTGTTGGTTTTTTAAAAAGTTTACGACTATCAAGCTGTGTTCTACAAGAAGACGACGTATTTGAAATCTTTAAAACAAATTTTGAACTCTGAAACCTCTTAATTTGCTTGTATTATGTGGCGAAAGGTCCCGGAGCCCTTTAAAAGGTAAAGCTGACCAAATTTTCAAAAATTCTAAGCTCTATCATCTGCATATAATGAAAATCGCAACACCTTTCATTAAACAATGGTAATACWTCAATTCCTGACAGATCTCATCACATCGCCCTTGATAAGATCCGCCAAACACCAAGTACCACCACTAAAACTCGGAACACAAATTGTATGCGAAGGTTATATGCAAAAACTGGCGGTAGAAGTATTCAGAAAGAACACATTTGACGACAGTCGGCGCTAAAACGGAGGTGAGAGAGTGAGAGAAAAAGAAACGAATGGTGGTAATCGAAAGGACAATACAAGAAGACGAAGAAGAAGAAAAACGGACGGGGCCCTACGCAACCGACCGATGGATCGAAACGGAGAAATATGGTCAAGCAGAGGGAGGGTGGTGGTGCCGTTGTCTCTGCGCGCTCGACCGTTTGACCGGTGTATGTGATATCGATCGACTGTGCCCGCGCCTCTCCCACCACTCTCTCACCATACCTTGAATCACTCTCACTCTTCGGCTCTTTTGACCGATAAACGCAAGAAGAAAGTATGCAAATAAACTCTAAGCAGGGAGACACTACTATATTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAACCTCTTAATTTGCTTGTA</pcr_primer_p1>
		<pcr_primer_p2>CATATAACCTTCGCATACAATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAAACCTCTTAATTTGCTTGTATTATGTGGCGAAAGGTCCCGGAGCCCTTTAAAAGGTAAAGCTGACCAAATTTTCAAAAATTCTAAGCTCTATCATCTGCATATAATGAAAATCGCAACACCTTTCATTAAACAATGGTAATACATCAATTCCTGACAGATCTCATCACATCGCCCTTGATAAGATCCGCCAAACACCAAGTACCACCACTAAAACTCGGAACACAAATTGTATGCGAAGGTTATATG</canonical_amplicon>
		<polymorphic_amplicon>TGAAACCTCTTAATTTGCTTGTATTATGTGGCGAAAGGTCCCGGAGCCCTTTAAAAGGTAAAGCTGACCAAATTTTCAAAAATTCTAAGCTCTATCATCTGCATATAATGAAAATCGCAACACCTTTCATTAAACAATGGTAATACWTCAATTCCTGACAGATCTCATCACATCGCCCTTGATAAGATCCGCCAAACACCAAGTACCACCACTAAAACTCGGAACACAAATTGTATGCGAAGGTTATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31006</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>86769</contig_pos>
        <strand>+</strand>
        <context>AGTACCACCA[C/T]TAAAACTCGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTCATCACATCGCCCTTGATAAGATCCGCCAAACACCAAGTACCACCA</left_flank>
        <right_flank>TAAAACTCGGAACACAAATTGTATGCGAAGGTTATATGCAAAAACTGGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTACCACCAAAATTGCTTTATTGTGAAAATCTACAAAAATGATTTTTTAGTTCTCTAATGTGCTCTTCCTGATGAACAGTTTTCTTAATTTTCTATTTTTAAATTGCGTTCTATGAGAAAAAACTATTCTTCTAACATTTTTCTTTGAGTAAAACTAGAATTATCGTTCTGAAATTTGAAAAGTTCTAAATTGTTATTTTGTTGGTTTTTTAAAAAGTTTACGACTATCAAGCTGTGTTCTACAAGAAGACGACGTATTTGAAATCTTTAAAACAAATTTTGAACTCTGAAACCTCTTAATTTGCTTGTATTATGTGGCGAAAGGTCCCGGAGCCCTTTAAAAGGTAAAGCTGACCAAATTTTCAAAAATTCTAAGCTCTATCATCTGCATATAATGAAAATCGCAACACCTTTCATTAAACAATGGTAATACATCAATTCCTGACAGATCTCATCACATCGCCCTTGATAAGATCCGCCAAACACCAAGTACCACCACTAAAACTCGGAACACAAATTGTATGCGAAGGTTATATGCAAAAACTGGCGGTAGAAGTATTCAGAAAGAACACATTTGACGACAGTCGGCGCTAAAACGGAGGTGAGAGAGTGAGAGAAAAAGAAACGAATGGTGGTAATCGAAAGGACAATACAAGAAGACGAAGAAGAAGAAAAACGGACGGGGCCCTACGCAACCGACCGATGGATCGAAACGGAGAAATATGGTCAAGCAGAGGGAGGGTGGTGGTGCCGTTGTCTCTGCGCGCTCGACCGTTTGACCGGTGTATGTGATATCGATCGACTGTGCCCGCGCCTCTCCCACCACTCTCTCACCATACCTTGAATCACTCTCACTCTTCGGCTCTTTTGACCGATAAACGCAAGAAGAAAGTATGCAAATAAACTCTAAGCAGGGAGACACTACTATATTTGCCGAACGCAAAATTGGATACAAATGATCAGCACAACACTTGCTTTTTTCCAGAACTTGGTCTTTTC</canonical>
            <polymorphic>TTTACCACCAAAATTGCTTTATTGTGAAAATCTACAAAAATGATTTTTTAGTTCTCTAATGTGCTCTTCCTGATGAACAGTTTTCTTAATTTTCTATTTTTAAATTGCGTTCTATGAGAAAAAACTATTCTTCTAACATTTTTCTTTGAGTAAAACTAGAATTATCGTTCTGAAATTTGAAAAGTTCTAAATTGTTATTTTGTTGGTTTTTTAAAAAGTTTACGACTATCAAGCTGTGTTCTACAAGAAGACGACGTATTTGAAATCTTTAAAACAAATTTTGAACTCTGAAACCTCTTAATTTGCTTGTATTATGTGGCGAAAGGTCCCGGAGCCCTTTAAAAGGTAAAGCTGACCAAATTTTCAAAAATTCTAAGCTCTATCATCTGCATATAATGAAAATCGCAACACCTTTCATTAAACAATGGTAATACATCAATTCCTGACAGATCTCATCACATCGCCCTTGATAAGATCCGCCAAACACCAAGTACCACCAYTAAAACTCGGAACACAAATTGTATGCGAAGGTTATATGCAAAAACTGGCGGTAGAAGTATTCAGAAAGAACACATTTGACGACAGTCGGCGCTAAAACGGAGGTGAGAGAGTGAGAGAAAAAGAAACGAATGGTGGTAATCGAAAGGACAATACAAGAAGACGAAGAAGAAGAAAAACGGACGGGGCCCTACGCAACCGACCGATGGATCGAAACGGAGAAATATGGTCAAGCAGAGGGAGGGTGGTGGTGCCGTTGTCTCTGCGCGCTCGACCGTTTGACCGGTGTATGTGATATCGATCGACTGTGCCCGCGCCTCTCCCACCACTCTCTCACCATACCTTGAATCACTCTCACTCTTCGGCTCTTTTGACCGATAAACGCAAGAAGAAAGTATGCAAATAAACTCTAAGCAGGGAGACACTACTATATTTGCCGAACGCAAAATTGGATACAAATGATCAGCACAACACTTGCTTTTTTCCAGAACTTGGTCTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>175 110 92 80 67 58 48 44 37 35 33 29 28 22 19 16 15 15 15 10 8 8 7 6 6 5 3 3 3 3</canonical_bands>
                <polymorphic_bands>175 110 92 80 67 58 48 44 37 35 33 29 28 22 19 18 16 15 15 10 8 8 7 6 6 5 3 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAACACCTTTCATTAAACAAT</pcr_primer_p1>
		<pcr_primer_p2>GTATTGTCCTTTCGATTACCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCAACACCTTTCATTAAACAATGGTAATACATCAATTCCTGACAGATCTCATCACATCGCCCTTGATAAGATCCGCCAAACACCAAGTACCACCACTAAAACTCGGAACACAAATTGTATGCGAAGGTTATATGCAAAAACTGGCGGTAGAAGTATTCAGAAAGAACACATTTGACGACAGTCGGCGCTAAAACGGAGGTGAGAGAGTGAGAGAAAAAGAAACGAATGGTGGTAATCGAAAGGACAATAC</canonical_amplicon>
		<polymorphic_amplicon>GCAACACCTTTCATTAAACAATGGTAATACATCAATTCCTGACAGATCTCATCACATCGCCCTTGATAAGATCCGCCAAACACCAAGTACCACCAYTAAAACTCGGAACACAAATTGTATGCGAAGGTTATATGCAAAAACTGGCGGTAGAAGTATTCAGAAAGAACACATTTGACGACAGTCGGCGCTAAAACGGAGGTGAGAGAGTGAGAGAAAAAGAAACGAATGGTGGTAATCGAAAGGACAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31007</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>166376</contig_pos>
        <strand></strand>
        <context>GCGGTGCCTG[T/A]GCTCGCACTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AACTCATTCTTCTTTTCACCCGAGTCATCAATCTATTGTGGCGGTGCCTG</left_flank>
        <right_flank>GCTCGCACTTCCGGGAAATGAGCTGGGGTTGCTTGAGGAGTGAAAATGTT</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCCAGAGCCAGAGAAAATTGTGAGTTTCAGATTATGACTTATCTTGCAGTATAACTTCTTGTTTTTAGGAAAAGGTATCGAAGAAGAAGAAAGTGAAGAAAACCACCAAAAAGGCTAAAGCTGAAGATGAAGAAGAGCAAGAGGAGAAATTGACCAAGAAGACCAAGAAAGTTTCGAAGAAGAAGGCCGTTGAGAAGACATCACAATCCCTTCTAGAAGATTTTCTGGGTCCTGCGGATGACACGGTGGCTAGTGGTGATTATGATCCTCTGTAATTTTCTCTGTAATTTTTTGAAAAAATTTACAAAAGTTGCTACTTATTCATTAAAAGTATCTGAATTGGGTGTGGCACAACGAAACCATTGTCGATATAAGATAAAATTGATTTTTTTCGAAAAAAATTACTTCCCAGAAAACGATTTATTATGAAACAAAAATGACATTTTGAAACTCATTCTTCTTTTCACCCGAGTCATCAATCTATTGTGGCGGTGCCTGTGCTCGCACTTCCGGGAAATGAGCTGGGGTTGCTTGAGGAGTGAAAATGTTCAAAACCTCGGACAAGGCGAATCACTTCTGGAAAACGTCGGAAATTGAGAAATATAATTTTTCTTTTTTTACCTTGTTGATGTTGCTGTTGTGGCCTGTTGTATCTGTGCATGCCCGTGTATCCTCGTAATCTGCAAAAATTTTTTACCGCTTTTCATAGTGAGTGAATCCTAAAAAAGATGGAAAAATTTATTTTCCAAATAACCATAGATCGAAAACAGATTCGGTTCAGAAAAACTGTAAATTTCTTTTTCGTACCTAGTTGCTGTTGTAGGTGTAGCCTCATCTGTGCAATCGGTGCTTCATGTTCAACCGAAATAAGCTAGCGTAAACACTCTGATATTCAGTACCTCTTAATTAAAGGGCACCCTCTAACGGCCTCGGTTGTTTCAAATCTTACTTTGAAGAAAATGTATTTGCAGGTCAGTGTTTGGACGTTGGATTGCGTGA</canonical>
            <polymorphic>AGCCAGAGCCAGAGAAAATTGTGAGTTTCAGATTATGACTTATCTTGCAGTATAACTTCTTGTTTTTAGGAAAAGGTATCGAAGAAGAAGAAAGTGAAGAAAACCACCAAAAAGGCTAAAGCTGAAGATGAAGAAGAGCAAGAGGAGAAATTGACCAAGAAGACCAAGAAAGTTTCGAAGAAGAAGGCCGTTGAGAAGACATCACAATCCCTTCTAGAAGATTTTCTGGGTCCTGCGGATGACACGGTGGCTAGTGGTGATTATGATCCTCTGTAATTTTCTCTGTAATTTTTTGAAAAAATTTACAAAAGTTGCTACTTATTCATTAAAAGTATCTGAATTGGGTGTGGCACAACGAAACCATTGTCGATATAAGATAAAATTGATTTTTTTCGAAAAAAATTACTTCCCAGAAAACGATTTATTATGAAACAAAAATGACATTTTGAAACTCATTCTTCTTTTCACCCGAGTCATCAATCTATTGTGGCGGTGCCTGWGCTCGCACTTCCGGGAAATGAGCTGGGGTTGCTTGAGGAGTGAAAATGTTCAAAACCTCGGACAAGGCGAATCACTTCTGGAAAACGTCGGAAATTGAGAAATATAATTTTTCTTTTTTTACCTTGTTGATGTTGCTGTTGTGGCCTGTTGTATCTGTGCATGCCCGTGTATCCTCGTAATCTGCAAAAATTTTTTACCGCTTTTCATAGTGAGTGAATCCTAAAAAAGATGGAAAAATTTATTTTCCAAATAACCATAGATCGAAAACAGATTCGGTTCAGAAAAACTGTAAATTTCTTTTTCGTACCTAGTTGCTGTTGTAGGTGTAGCCTCATCTGTGCAATCGGTGCTTCATGTTCAACCGAAATAAGCTAGCGTAAACACTCTGATATTCAGTACCTCTTAATTAAAGGGCACCCTCTAACGGCCTCGGTTGTTTCAAATCTTACTTTGAAGAAAATGTATTTGCAGGTCAGTGTTTGGACGTTGGATTGCGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>503 414 83</canonical_bands>
                <polymorphic_bands>917 83</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>115 111 98 88 73 69 62 43 40 35 34 33 32 23 22 20 16 14 10 10 9 7 6 6 6 5 4 3 3 2 1</canonical_bands>
                <polymorphic_bands>115 111 98 88 73 69 62 43 40 35 34 33 32 23 22 20 16 14 12 10 10 9 7 6 5 4 3 3 2 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGACATTTTGAAACTCATTCTT</pcr_primer_p1>
		<pcr_primer_p2>TTGCAGATTACGAGGATACAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGACATTTTGAAACTCATTCTTCTTTTCACCCGAGTCATCAATCTATTGTGGCGGTGCCTGTGCTCGCACTTCCGGGAAATGAGCTGGGGTTGCTTGAGGAGTGAAAATGTTCAAAACCTCGGACAAGGCGAATCACTTCTGGAAAACGTCGGAAATTGAGAAATATAATTTTTCTTTTTTTACCTTGTTGATGTTGCTGTTGTGGCCTGTTGTATCTGTGCATGCCCGTGTATCCTCGTAATCTGCAA</canonical_amplicon>
		<polymorphic_amplicon>ATGACATTTTGAAACTCATTCTTCTTTTCACCCGAGTCATCAATCTATTGTGGCGGTGCCTGWGCTCGCACTTCCGGGAAATGAGCTGGGGTTGCTTGAGGAGTGAAAATGTTCAAAACCTCGGACAAGGCGAATCACTTCTGGAAAACGTCGGAAATTGAGAAATATAATTTTTCTTTTTTTACCTTGTTGATGTTGCTGTTGTGGCCTGTTGTATCTGTGCATGCCCGTGTATCCTCGTAATCTGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31008</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>166567</contig_pos>
        <strand></strand>
        <context>TCTGCAAAAA[T/A]TTTTTACCGC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GTGGCCTGTTGTATCTGTGCATGCCCGTGTATCCTCGTAATCTGCAAAAA</left_flank>
        <right_flank>TTTTTACCGCTTTTCATAGTGAGTGAATCCTAAAAAAGATGGAAAAATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGAAGACATCACAATCCCTTCTAGAAGATTTTCTGGGTCCTGCGGATGACACGGTGGCTAGTGGTGATTATGATCCTCTGTAATTTTCTCTGTAATTTTTTGAAAAAATTTACAAAAGTTGCTACTTATTCATTAAAAGTATCTGAATTGGGTGTGGCACAACGAAACCATTGTCGATATAAGATAAAATTGATTTTTTTCGAAAAAAATTACTTCCCAGAAAACGATTTATTATGAAACAAAAATGACATTTTGAAACTCATTCTTCTTTTCACCCGAGTCATCAATCTATTGTGGCGGTGCCTGTGCTCGCACTTCCGGGAAATGAGCTGGGGTTGCTTGAGGAGTGAAAATGTTCAAAACCTCGGACAAGGCGAATCACTTCTGGAAAACGTCGGAAATTGAGAAATATAATTTTTCTTTTTTTACCTTGTTGATGTTGCTGTTGTGGCCTGTTGTATCTGTGCATGCCCGTGTATCCTCGTAATCTGCAAAAATTTTTTACCGCTTTTCATAGTGAGTGAATCCTAAAAAAGATGGAAAAATTTATTTTCCAAATAACCATAGATCGAAAACAGATTCGGTTCAGAAAAACTGTAAATTTCTTTTTCGTACCTAGTTGCTGTTGTAGGTGTAGCCTCATCTGTGCAATCGGTGCTTCATGTTCAACCGAAATAAGCTAGCGTAAACACTCTGATATTCAGTACCTCTTAATTAAAGGGCACCCTCTAACGGCCTCGGTTGTTTCAAATCTTACTTTGAAGAAAATGTATTTGCAGGTCAGTGTTTGGACGTTGGATTGCGTGACGCTTCCTTTTGTTGAGCTGGAAAATCAAAATGTTGAAATATTTGTTTGAAAGTTCGCAGAAGTTCTGGGATCGAAGGACACCAATCCATTCGTATTCCCATAATAATGAGCTTACCCAACAGACTATCATATTCAATCGCTGGTTGGAGAGTCTCTAGTTGAGCTATCAATTGTTGGACAAGCGGTGCTT</canonical>
            <polymorphic>TGAGAAGACATCACAATCCCTTCTAGAAGATTTTCTGGGTCCTGCGGATGACACGGTGGCTAGTGGTGATTATGATCCTCTGTAATTTTCTCTGTAATTTTTTGAAAAAATTTACAAAAGTTGCTACTTATTCATTAAAAGTATCTGAATTGGGTGTGGCACAACGAAACCATTGTCGATATAAGATAAAATTGATTTTTTTCGAAAAAAATTACTTCCCAGAAAACGATTTATTATGAAACAAAAATGACATTTTGAAACTCATTCTTCTTTTCACCCGAGTCATCAATCTATTGTGGCGGTGCCTGTGCTCGCACTTCCGGGAAATGAGCTGGGGTTGCTTGAGGAGTGAAAATGTTCAAAACCTCGGACAAGGCGAATCACTTCTGGAAAACGTCGGAAATTGAGAAATATAATTTTTCTTTTTTTACCTTGTTGATGTTGCTGTTGTGGCCTGTTGTATCTGTGCATGCCCGTGTATCCTCGTAATCTGCAAAAAWTTTTTACCGCTTTTCATAGTGAGTGAATCCTAAAAAAGATGGAAAAATTTATTTTCCAAATAACCATAGATCGAAAACAGATTCGGTTCAGAAAAACTGTAAATTTCTTTTTCGTACCTAGTTGCTGTTGTAGGTGTAGCCTCATCTGTGCAATCGGTGCTTCATGTTCAACCGAAATAAGCTAGCGTAAACACTCTGATATTCAGTACCTCTTAATTAAAGGGCACCCTCTAACGGCCTCGGTTGTTTCAAATCTTACTTTGAAGAAAATGTATTTGCAGGTCAGTGTTTGGACGTTGGATTGCGTGACGCTTCCTTTTGTTGAGCTGGAAAATCAAAATGTTGAAATATTTGTTTGAAAGTTCGCAGAAGTTCTGGGATCGAAGGACACCAATCCATTCGTATTCCCATAATAATGAGCTTACCCAACAGACTATCATATTCAATCGCTGGTTGGAGAGTCTCTAGTTGAGCTATCAATTGTTGGACAAGCGGTGCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>399 389 108 56 48</canonical_bands>
                <polymorphic_bands>437 399 108 56</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>264 192 113 83 83 56 48 42 39 22 20 13 13 12</canonical_bands>
                <polymorphic_bands>264 192 131 113 83 56 42 39 22 20 13 13 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTCGGAAATTGAGAAATATAA</pcr_primer_p1>
		<pcr_primer_p2>CTACACCTACAACAGCAACTAGG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CGTCGGAAATTGAGAAATATAATTTTTCTTTTTTTACCTTGTTGATGTTGCTGTTGTGGCCTGTTGTATCTGTGCATGCCCGTGTATCCTCGTAATCTGCAAAAATTTTTTACCGCTTTTCATAGTGAGTGAATCCTAAAAAAGATGGAAAAATTTATTTTCCAAATAACCATAGATCGAAAACAGATTCGGTTCAGAAAAACTGTAAATTTCTTTTTCGTACCTAGTTGCTGTTGTAGGTGTAG</canonical_amplicon>
		<polymorphic_amplicon>CGTCGGAAATTGAGAAATATAATTTTTCTTTTTTTACCTTGTTGATGTTGCTGTTGTGGCCTGTTGTATCTGTGCATGCCCGTGTATCCTCGTAATCTGCAAAAAWTTTTTACCGCTTTTCATAGTGAGTGAATCCTAAAAAAGATGGAAAAATTTATTTTCCAAATAACCATAGATCGAAAACAGATTCGGTTCAGAAAAACTGTAAATTTCTTTTTCGTACCTAGTTGCTGTTGTAGGTGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31009</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>166723</contig_pos>
        <strand></strand>
        <context>CTGTGCAATC[G/C]GTGCTTCATG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TCTTTTTCGTACCTAGTTGCTGTTGTAGGTGTAGCCTCATCTGTGCAATC</left_flank>
        <right_flank>GTGCTTCATGTTCAACCGAAATAAGCTAGCGTAAACACTCTGATATTCAG</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCACAACGAAACCATTGTCGATATAAGATAAAATTGATTTTTTTCGAAAAAAATTACTTCCCAGAAAACGATTTATTATGAAACAAAAATGACATTTTGAAACTCATTCTTCTTTTCACCCGAGTCATCAATCTATTGTGGCGGTGCCTGTGCTCGCACTTCCGGGAAATGAGCTGGGGTTGCTTGAGGAGTGAAAATGTTCAAAACCTCGGACAAGGCGAATCACTTCTGGAAAACGTCGGAAATTGAGAAATATAATTTTTCTTTTTTTACCTTGTTGATGTTGCTGTTGTGGCCTGTTGTATCTGTGCATGCCCGTGTATCCTCGTAATCTGCAAAAATTTTTTACCGCTTTTCATAGTGAGTGAATCCTAAAAAAGATGGAAAAATTTATTTTCCAAATAACCATAGATCGAAAACAGATTCGGTTCAGAAAAACTGTAAATTTCTTTTTCGTACCTAGTTGCTGTTGTAGGTGTAGCCTCATCTGTGCAATCGGTGCTTCATGTTCAACCGAAATAAGCTAGCGTAAACACTCTGATATTCAGTACCTCTTAATTAAAGGGCACCCTCTAACGGCCTCGGTTGTTTCAAATCTTACTTTGAAGAAAATGTATTTGCAGGTCAGTGTTTGGACGTTGGATTGCGTGACGCTTCCTTTTGTTGAGCTGGAAAATCAAAATGTTGAAATATTTGTTTGAAAGTTCGCAGAAGTTCTGGGATCGAAGGACACCAATCCATTCGTATTCCCATAATAATGAGCTTACCCAACAGACTATCATATTCAATCGCTGGTTGGAGAGTCTCTAGTTGAGCTATCAATTGTTGGACAAGCGGTGCTTGGAAAATCGGTTGTGGGACCATCGGTTCTTGAACCATCATTTGTTGAACGGGCGGTTGATGGACAATAAATTGTGGACGATGAGCACCAAGTTGTGGTTGCATGTGGGGCATTTGATGACCTCAGAATCGAAATATTGGTTCACAATACAAAGTTT</canonical>
            <polymorphic>TGGCACAACGAAACCATTGTCGATATAAGATAAAATTGATTTTTTTCGAAAAAAATTACTTCCCAGAAAACGATTTATTATGAAACAAAAATGACATTTTGAAACTCATTCTTCTTTTCACCCGAGTCATCAATCTATTGTGGCGGTGCCTGTGCTCGCACTTCCGGGAAATGAGCTGGGGTTGCTTGAGGAGTGAAAATGTTCAAAACCTCGGACAAGGCGAATCACTTCTGGAAAACGTCGGAAATTGAGAAATATAATTTTTCTTTTTTTACCTTGTTGATGTTGCTGTTGTGGCCTGTTGTATCTGTGCATGCCCGTGTATCCTCGTAATCTGCAAAAATTTTTTACCGCTTTTCATAGTGAGTGAATCCTAAAAAAGATGGAAAAATTTATTTTCCAAATAACCATAGATCGAAAACAGATTCGGTTCAGAAAAACTGTAAATTTCTTTTTCGTACCTAGTTGCTGTTGTAGGTGTAGCCTCATCTGTGCAATCSGTGCTTCATGTTCAACCGAAATAAGCTAGCGTAAACACTCTGATATTCAGTACCTCTTAATTAAAGGGCACCCTCTAACGGCCTCGGTTGTTTCAAATCTTACTTTGAAGAAAATGTATTTGCAGGTCAGTGTTTGGACGTTGGATTGCGTGACGCTTCCTTTTGTTGAGCTGGAAAATCAAAATGTTGAAATATTTGTTTGAAAGTTCGCAGAAGTTCTGGGATCGAAGGACACCAATCCATTCGTATTCCCATAATAATGAGCTTACCCAACAGACTATCATATTCAATCGCTGGTTGGAGAGTCTCTAGTTGAGCTATCAATTGTTGGACAAGCGGTGCTTGGAAAATCGGTTGTGGGACCATCGGTTCTTGAACCATCATTTGTTGAACGGGCGGTTGATGGACAATAAATTGTGGACGATGAGCACCAAGTTGTGGTTGCATGTGGGGCATTTGATGACCTCAGAATCGAAATATTGGTTCACAATACAAAGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTGTAAATTTCTTTTTCGTACC</pcr_primer_p1>
		<pcr_primer_p2>AACATTTTGATTTTCCAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACTGTAAATTTCTTTTTCGTACCTAGTTGCTGTTGTAGGTGTAGCCTCATCTGTGCAATCGGTGCTTCATGTTCAACCGAAATAAGCTAGCGTAAACACTCTGATATTCAGTACCTCTTAATTAAAGGGCACCCTCTAACGGCCTCGGTTGTTTCAAATCTTACTTTGAAGAAAATGTATTTGCAGGTCAGTGTTTGGACGTTGGATTGCGTGACGCTTCCTTTTGTTGAGCTGGAAAATCAAAATGTT</canonical_amplicon>
		<polymorphic_amplicon>AACTGTAAATTTCTTTTTCGTACCTAGTTGCTGTTGTAGGTGTAGCCTCATCTGTGCAATCSGTGCTTCATGTTCAACCGAAATAAGCTAGCGTAAACACTCTGATATTCAGTACCTCTTAATTAAAGGGCACCCTCTAACGGCCTCGGTTGTTTCAAATCTTACTTTGAAGAAAATGTATTTGCAGGTCAGTGTTTGGACGTTGGATTGCGTGACGCTTCCTTTTGTTGAGCTGGAAAATCAAAATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31010</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>166749</contig_pos>
        <strand></strand>
        <context>CCGAAATAAG[C/A]tagcgtaaac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AGGTGTAGCCTCATCTGTGCAATCGGTGCTTCATGTTCAACCGAAATAAG</left_flank>
        <right_flank>TAGCGTAAACACTCTGATATTCAGTACCTCTTAATTAAAGGGCACCCTCT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGATAAAATTGATTTTTTTCGAAAAAAATTACTTCCCAGAAAACGATTTATTATGAAACAAAAATGACATTTTGAAACTCATTCTTCTTTTCACCCGAGTCATCAATCTATTGTGGCGGTGCCTGTGCTCGCACTTCCGGGAAATGAGCTGGGGTTGCTTGAGGAGTGAAAATGTTCAAAACCTCGGACAAGGCGAATCACTTCTGGAAAACGTCGGAAATTGAGAAATATAATTTTTCTTTTTTTACCTTGTTGATGTTGCTGTTGTGGCCTGTTGTATCTGTGCATGCCCGTGTATCCTCGTAATCTGCAAAAATTTTTTACCGCTTTTCATAGTGAGTGAATCCTAAAAAAGATGGAAAAATTTATTTTCCAAATAACCATAGATCGAAAACAGATTCGGTTCAGAAAAACTGTAAATTTCTTTTTCGTACCTAGTTGCTGTTGTAGGTGTAGCCTCATCTGTGCAATCGGTGCTTCATGTTCAACCGAAATAAGCTAGCGTAAACACTCTGATATTCAGTACCTCTTAATTAAAGGGCACCCTCTAACGGCCTCGGTTGTTTCAAATCTTACTTTGAAGAAAATGTATTTGCAGGTCAGTGTTTGGACGTTGGATTGCGTGACGCTTCCTTTTGTTGAGCTGGAAAATCAAAATGTTGAAATATTTGTTTGAAAGTTCGCAGAAGTTCTGGGATCGAAGGACACCAATCCATTCGTATTCCCATAATAATGAGCTTACCCAACAGACTATCATATTCAATCGCTGGTTGGAGAGTCTCTAGTTGAGCTATCAATTGTTGGACAAGCGGTGCTTGGAAAATCGGTTGTGGGACCATCGGTTCTTGAACCATCATTTGTTGAACGGGCGGTTGATGGACAATAAATTGTGGACGATGAGCACCAAGTTGTGGTTGCATGTGGGGCATTTGATGACCTCAGAATCGAAATATTGGTTCACAATACAAAGTTTCTGGTCTCACCTTCATTATTCATTGT</canonical>
            <polymorphic>AAGATAAAATTGATTTTTTTCGAAAAAAATTACTTCCCAGAAAACGATTTATTATGAAACAAAAATGACATTTTGAAACTCATTCTTCTTTTCACCCGAGTCATCAATCTATTGTGGCGGTGCCTGTGCTCGCACTTCCGGGAAATGAGCTGGGGTTGCTTGAGGAGTGAAAATGTTCAAAACCTCGGACAAGGCGAATCACTTCTGGAAAACGTCGGAAATTGAGAAATATAATTTTTCTTTTTTTACCTTGTTGATGTTGCTGTTGTGGCCTGTTGTATCTGTGCATGCCCGTGTATCCTCGTAATCTGCAAAAATTTTTTACCGCTTTTCATAGTGAGTGAATCCTAAAAAAGATGGAAAAATTTATTTTCCAAATAACCATAGATCGAAAACAGATTCGGTTCAGAAAAACTGTAAATTTCTTTTTCGTACCTAGTTGCTGTTGTAGGTGTAGCCTCATCTGTGCAATCGGTGCTTCATGTTCAACCGAAATAAGMTAGCGTAAACACTCTGATATTCAGTACCTCTTAATTAAAGGGCACCCTCTAACGGCCTCGGTTGTTTCAAATCTTACTTTGAAGAAAATGTATTTGCAGGTCAGTGTTTGGACGTTGGATTGCGTGACGCTTCCTTTTGTTGAGCTGGAAAATCAAAATGTTGAAATATTTGTTTGAAAGTTCGCAGAAGTTCTGGGATCGAAGGACACCAATCCATTCGTATTCCCATAATAATGAGCTTACCCAACAGACTATCATATTCAATCGCTGGTTGGAGAGTCTCTAGTTGAGCTATCAATTGTTGGACAAGCGGTGCTTGGAAAATCGGTTGTGGGACCATCGGTTCTTGAACCATCATTTGTTGAACGGGCGGTTGATGGACAATAAATTGTGGACGATGAGCACCAAGTTGTGGTTGCATGTGGGGCATTTGATGACCTCAGAATCGAAATATTGGTTCACAATACAAAGTTTCTGGTCTCACCTTCATTATTCATTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>350 209 149 145 94 53</canonical_bands>
                <polymorphic_bands>495 209 149 94 53</polymorphic_bands>
            </assay>
            <assay>
                <site>GCTAGC</site>
                <isoschizomers>
                    <enzyme>AsuNHI</enzyme>
                    <enzyme>BmtI</enzyme>
                    <enzyme>NheI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>436 283 217 64</canonical_bands>
                <polymorphic_bands>436 347 217</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 213 158 130</canonical_bands>
                <polymorphic_bands>712 158 130</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>209 186 149 122 94 89 56 53 42</canonical_bands>
                <polymorphic_bands>209 186 149 122 98 94 89 53</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTGTAAATTTCTTTTTCGTACC</pcr_primer_p1>
		<pcr_primer_p2>AACATTTTGATTTTCCAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACTGTAAATTTCTTTTTCGTACCTAGTTGCTGTTGTAGGTGTAGCCTCATCTGTGCAATCGGTGCTTCATGTTCAACCGAAATAAGCTAGCGTAAACACTCTGATATTCAGTACCTCTTAATTAAAGGGCACCCTCTAACGGCCTCGGTTGTTTCAAATCTTACTTTGAAGAAAATGTATTTGCAGGTCAGTGTTTGGACGTTGGATTGCGTGACGCTTCCTTTTGTTGAGCTGGAAAATCAAAATGTT</canonical_amplicon>
		<polymorphic_amplicon>AACTGTAAATTTCTTTTTCGTACCTAGTTGCTGTTGTAGGTGTAGCCTCATCTGTGCAATCGGTGCTTCATGTTCAACCGAAATAAGMTAGCGTAAACACTCTGATATTCAGTACCTCTTAATTAAAGGGCACCCTCTAACGGCCTCGGTTGTTTCAAATCTTACTTTGAAGAAAATGTATTTGCAGGTCAGTGTTTGGACGTTGGATTGCGTGACGCTTCCTTTTGTTGAGCTGGAAAATCAAAATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31011</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>212162</contig_pos>
        <strand>+</strand>
        <context>CAGGTGGCGA[A/G]GCGACTCCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGCTTCCGAACGAGTCTTCGGCGTCATAGACCAATTGATCAGGTGGCGA</left_flank>
        <right_flank>GCGACTCCTTGGTTACGGGCAAAGATCTTGAGCGTCTTTCCGGCGCGGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAACATAAAAAAAATTACAGATAACTAAAGAGATAGATAACTTCCTGAAACTTGAAGTTCAGATTTTTCGAGCCATATGGATAAGAATCTTGGAAAACACTTGGTGGTAAACTTCCTGCAATCTGTTTACAAAATTGTTGATTTATTGCTATTCGTAAAATCAAAAAAAAAATGCTTTATTGAAATCAAATAGAAGAAAGAAGATTACAGAGACGTGAAGAAGGTGGTAGGGAATTTATAAGAGCGTGGGGACGTTGGTTTCAACAAGAAATCGTTACAATATATCTGAATTAAAGATTTGTAGAGAAGTTTTGCTGGTTTAGGCAGTGCTCTGGCGTTGGATGTGGGTAGCACGTTCCTGAAAAAAAACCGTTTGAATTTAATTAGCTGAAATTCCGTAGCCGTACCTCTCCTTCTTTATTGAAGAGGATGGTTTGGACGTTGTTTCCGCTTCCGAACGAGTCTTCGGCGTCATAGACCAATTGATCAGGTGGCGAGGCGACTCCTTGGTTACGGGCAAAGATCTTGAGCGTCTTTCCGGCGCGGAGGACAAAGTCTCTTGGAACGGTGTAGACAATCTCGCGCTTTCCGTCGATACGTCTCTTCAGCTTCCACTCACCGATTGCCTGAAAAATTTGAATTCGAAAAAAAAAAAACAAAAAACGGTTAATACAAACCTCGTCCTTGGCACGATGAGTATTCTGGAGGACGATGTACTTTCCATCTGGCGATGCCTCGTGGATAGAAACATTTCCCTTGGCTGAACGTTGGAAGGATTGACGGGAGGCGGTCTCGCCCTTCACAACTCTCATCGTTTCTGAAATATCTAGTTCATTTTTAGGTATTCTCTTTGTTGATTACCTGTGTCGGTTTCTTGGGAAATGGCGTGGGTCTTGACGACTTGCTCGACAAGTTGCTTGAGTCCAGCACGGTTCTCCTCTCCTTCCAACATCTTTCTGTAGATGGCAATTTCGGCATCGAGGGTTTGCTTGGTATCG</canonical>
            <polymorphic>GAAAACATAAAAAAAATTACAGATAACTAAAGAGATAGATAACTTCCTGAAACTTGAAGTTCAGATTTTTCGAGCCATATGGATAAGAATCTTGGAAAACACTTGGTGGTAAACTTCCTGCAATCTGTTTACAAAATTGTTGATTTATTGCTATTCGTAAAATCAAAAAAAAAATGCTTTATTGAAATCAAATAGAAGAAAGAAGATTACAGAGACGTGAAGAAGGTGGTAGGGAATTTATAAGAGCGTGGGGACGTTGGTTTCAACAAGAAATCGTTACAATATATCTGAATTAAAGATTTGTAGAGAAGTTTTGCTGGTTTAGGCAGTGCTCTGGCGTTGGATGTGGGTAGCACGTTCCTGAAAAAAAACCGTTTGAATTTAATTAGCTGAAATTCCGTAGCCGTACCTCTCCTTCTTTATTGAAGAGGATGGTTTGGACGTTGTTTCCGCTTCCGAACGAGTCTTCGGCGTCATAGACCAATTGATCAGGTGGCGARGCGACTCCTTGGTTACGGGCAAAGATCTTGAGCGTCTTTCCGGCGCGGAGGACAAAGTCTCTTGGAACGGTGTAGACAATCTCGCGCTTTCCGTCGATACGTCTCTTCAGCTTCCACTCACCGATTGCCTGAAAAATTTGAATTCGAAAAAAAAAAAACAAAAAACGGTTAATACAAACCTCGTCCTTGGCACGATGAGTATTCTGGAGGACGATGTACTTTCCATCTGGCGATGCCTCGTGGATAGAAACATTTCCCTTGGCTGAACGTTGGAAGGATTGACGGGAGGCGGTCTCGCCCTTCACAACTCTCATCGTTTCTGAAATATCTAGTTCATTTTTAGGTATTCTCTTTGTTGATTACCTGTGTCGGTTTCTTGGGAAATGGCGTGGGTCTTGACGACTTGCTCGACAAGTTGCTTGAGTCCAGCACGGTTCTCCTCTCCTTCCAACATCTTTCTGTAGATGGCAATTTCGGCATCGAGGGTTTGCTTGGTATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTACCTCTCCTTCTTTATTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCGAATTCAAATTTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CGTACCTCTCCTTCTTTATTGAAGAGGATGGTTTGGACGTTGTTTCCGCTTCCGAACGAGTCTTCGGCGTCATAGACCAATTGATCAGGTGGCGAGGCGACTCCTTGGTTACGGGCAAAGATCTTGAGCGTCTTTCCGGCGCGGAGGACAAAGTCTCTTGGAACGGTGTAGACAATCTCGCGCTTTCCGTCGATACGTCTCTTCAGCTTCCACTCACCGATTGCCTGAAAAATTTGAATTCGAAAA</canonical_amplicon>
		<polymorphic_amplicon>CGTACCTCTCCTTCTTTATTGAAGAGGATGGTTTGGACGTTGTTTCCGCTTCCGAACGAGTCTTCGGCGTCATAGACCAATTGATCAGGTGGCGARGCGACTCCTTGGTTACGGGCAAAGATCTTGAGCGTCTTTCCGGCGCGGAGGACAAAGTCTCTTGGAACGGTGTAGACAATCTCGCGCTTTCCGTCGATACGTCTCTTCAGCTTCCACTCACCGATTGCCTGAAAAATTTGAATTCGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31012</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>233729</contig_pos>
        <strand></strand>
        <context>gcaaaattat[T/C]aatctgggcc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTAT</left_flank>
        <right_flank>AATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTAAATCT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTTGAAATTTTTCGAGGATATAAAACAGACCTAAATTGACTAATACAGTCACAGAATTTTTCGAGATTTCCTAATTTTTCAGCTATTTCCCGATATCTGAACGACACGTGGTTTTTTTTCTTTTTCAGTTATATATATTTCGTTTATTCGAAGGATTTGAAGAAGTACGGAGTGATGGTAACCGGGGAAAGAAAATAGTAAAAAACGAAGCTAAGAAGGACTAACCCGCAAGAGTTGATCCTAATGTGGGGAAGGAAAAGAGAGATAGTGGCAAGATCAAAGGGATGGGGGCAAGTCAGAAACGGGTAATCGAGATCTCAAGAAGTTTTTGGAATTGTGAGGGTGGTAAGAAGGTGGGGCAGTTCTTCACAATAGCGTTCCAAATTGGGATCGTTTGAGAAAAACAGTTCAAAGTGGTCTAAAAAAAAGTGCCTCTCAAAAATCGGTGAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTATTAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTAAATCTTTACAACCGAGCTATAGACTTTTGAAAATGGTCGTAATGTCAGAAAATCAAATTAACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTATTATAATTGCCTAACCCATACTTACTGTTGCTTTCAAAAATAATGGAGCAGCCACAGAAAATAGTAAAGATAGGACCGCGTGAGCTGTGATTTGAAACTTGACTCGAAGTGGCTCCGAAATCCTCGGGAGCACCGATAGAAGGAATAACCCTCCTACCAACGCATGCGGTATCATATAAAGATGGTCCTTGTACATTTTAAAATCAGACCATATCATTGTGATTAGCCCGACTTACGGGGGGGTGGGGGGGGGGGATAACACCAGTCGAACACTAAAGTCTCGACTGGTTCTTACACGAGTAAGTGGCAAATATAAGAAGCTCTCCCTGGGCGAGCACGGAGGT</canonical>
            <polymorphic>ACTTTGAAATTTTTCGAGGATATAAAACAGACCTAAATTGACTAATACAGTCACAGAATTTTTCGAGATTTCCTAATTTTTCAGCTATTTCCCGATATCTGAACGACACGTGGTTTTTTTTCTTTTTCAGTTATATATATTTCGTTTATTCGAAGGATTTGAAGAAGTACGGAGTGATGGTAACCGGGGAAAGAAAATAGTAAAAAACGAAGCTAAGAAGGACTAACCCGCAAGAGTTGATCCTAATGTGGGGAAGGAAAAGAGAGATAGTGGCAAGATCAAAGGGATGGGGGCAAGTCAGAAACGGGTAATCGAGATCTCAAGAAGTTTTTGGAATTGTGAGGGTGGTAAGAAGGTGGGGCAGTTCTTCACAATAGCGTTCCAAATTGGGATCGTTTGAGAAAAACAGTTCAAAGTGGTCTAAAAAAAAGTGCCTCTCAAAAATCGGTGAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTATYAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTAAATCTTTACAACCGAGCTATAGACTTTTGAAAATGGTCGTAATGTCAGAAAATCAAATTAACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTATTATAATTGCCTAACCCATACTTACTGTTGCTTTCAAAAATAATGGAGCAGCCACAGAAAATAGTAAAGATAGGACCGCGTGAGCTGTGATTTGAAACTTGACTCGAAGTGGCTCCGAAATCCTCGGGAGCACCGATAGAAGGAATAACCCTCCTACCAACGCATGCGGTATCATATAAAGATGGTCCTTGTACATTTTAAAATCAGACCATATCATTGTGATTAGCCCGACTTACGGGGGGGTGGGGGGGGGGGATAACACCAGTCGAACACTAAAGTCTCGACTGGTTCTTACACGAGTAAGTGGCAAATATAAGAAGCTCTCCCTGGGCGAGCACGGAGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>499 251 146 60 44</canonical_bands>
                <polymorphic_bands>543 251 146 60</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGCAAGAGTTGATCCTAATG</pcr_primer_p1>
		<pcr_primer_p2>TACTGGTCAATAAGAGCCATAAA</pcr_primer_p2>
		<pcr_amplicon_size>428</pcr_amplicon_size>
		<canonical_amplicon>CGCAAGAGTTGATCCTAATGTGGGGAAGGAAAAGAGAGATAGTGGCAAGATCAAAGGGATGGGGGCAAGTCAGAAACGGGTAATCGAGATCTCAAGAAGTTTTTGGAATTGTGAGGGTGGTAAGAAGGTGGGGCAGTTCTTCACAATAGCGTTCCAAATTGGGATCGTTTGAGAAAAACAGTTCAAAGTGGTCTAAAAAAAAGTGCCTCTCAAAAATCGGTGAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTATTAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTAAATCTTTACAACCGAGCTATAGACTTTTGAAAATGGTCGTAATGTCAGAAAATCAAATTAACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTA</canonical_amplicon>
		<polymorphic_amplicon>CGCAAGAGTTGATCCTAATGTGGGGAAGGAAAAGAGAGATAGTGGCAAGATCAAAGGGATGGGGGCAAGTCAGAAACGGGTAATCGAGATCTCAAGAAGTTTTTGGAATTGTGAGGGTGGTAAGAAGGTGGGGCAGTTCTTCACAATAGCGTTCCAAATTGGGATCGTTTGAGAAAAACAGTTCAAAGTGGTCTAAAAAAAAGTGCCTCTCAAAAATCGGTGAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTATYAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTAAATCTTTACAACCGAGCTATAGACTTTTGAAAATGGTCGTAATGTCAGAAAATCAAATTAACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31013</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>233774</contig_pos>
        <strand></strand>
        <context>aaagtgattt[A/T]aatctttaca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTATTAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTT</left_flank>
        <right_flank>AATCTTTACAACCGAGCTATAGACTTTTGAAAATGGTCGTAATGTCAGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACAGTCACAGAATTTTTCGAGATTTCCTAATTTTTCAGCTATTTCCCGATATCTGAACGACACGTGGTTTTTTTTCTTTTTCAGTTATATATATTTCGTTTATTCGAAGGATTTGAAGAAGTACGGAGTGATGGTAACCGGGGAAAGAAAATAGTAAAAAACGAAGCTAAGAAGGACTAACCCGCAAGAGTTGATCCTAATGTGGGGAAGGAAAAGAGAGATAGTGGCAAGATCAAAGGGATGGGGGCAAGTCAGAAACGGGTAATCGAGATCTCAAGAAGTTTTTGGAATTGTGAGGGTGGTAAGAAGGTGGGGCAGTTCTTCACAATAGCGTTCCAAATTGGGATCGTTTGAGAAAAACAGTTCAAAGTGGTCTAAAAAAAAGTGCCTCTCAAAAATCGGTGAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTATTAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTAAATCTTTACAACCGAGCTATAGACTTTTGAAAATGGTCGTAATGTCAGAAAATCAAATTAACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTATTATAATTGCCTAACCCATACTTACTGTTGCTTTCAAAAATAATGGAGCAGCCACAGAAAATAGTAAAGATAGGACCGCGTGAGCTGTGATTTGAAACTTGACTCGAAGTGGCTCCGAAATCCTCGGGAGCACCGATAGAAGGAATAACCCTCCTACCAACGCATGCGGTATCATATAAAGATGGTCCTTGTACATTTTAAAATCAGACCATATCATTGTGATTAGCCCGACTTACGGGGGGGTGGGGGGGGGGGATAACACCAGTCGAACACTAAAGTCTCGACTGGTTCTTACACGAGTAAGTGGCAAATATAAGAAGCTCTCCCTGGGCGAGCACGGAGGTTTTGGAGGGGGCTAAGGGCCACAGAGATGGAACTAGAGAAAAAGA</canonical>
            <polymorphic>TACAGTCACAGAATTTTTCGAGATTTCCTAATTTTTCAGCTATTTCCCGATATCTGAACGACACGTGGTTTTTTTTCTTTTTCAGTTATATATATTTCGTTTATTCGAAGGATTTGAAGAAGTACGGAGTGATGGTAACCGGGGAAAGAAAATAGTAAAAAACGAAGCTAAGAAGGACTAACCCGCAAGAGTTGATCCTAATGTGGGGAAGGAAAAGAGAGATAGTGGCAAGATCAAAGGGATGGGGGCAAGTCAGAAACGGGTAATCGAGATCTCAAGAAGTTTTTGGAATTGTGAGGGTGGTAAGAAGGTGGGGCAGTTCTTCACAATAGCGTTCCAAATTGGGATCGTTTGAGAAAAACAGTTCAAAGTGGTCTAAAAAAAAGTGCCTCTCAAAAATCGGTGAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTATTAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTWAATCTTTACAACCGAGCTATAGACTTTTGAAAATGGTCGTAATGTCAGAAAATCAAATTAACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTATTATAATTGCCTAACCCATACTTACTGTTGCTTTCAAAAATAATGGAGCAGCCACAGAAAATAGTAAAGATAGGACCGCGTGAGCTGTGATTTGAAACTTGACTCGAAGTGGCTCCGAAATCCTCGGGAGCACCGATAGAAGGAATAACCCTCCTACCAACGCATGCGGTATCATATAAAGATGGTCCTTGTACATTTTAAAATCAGACCATATCATTGTGATTAGCCCGACTTACGGGGGGGTGGGGGGGGGGGATAACACCAGTCGAACACTAAAGTCTCGACTGGTTCTTACACGAGTAAGTGGCAAATATAAGAAGCTCTCCCTGGGCGAGCACGGAGGTTTTGGAGGGGGCTAAGGGCCACAGAGATGGAACTAGAGAAAAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 311 190</canonical_bands>
                <polymorphic_bands>810 190</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>454 251 191 60 44</canonical_bands>
                <polymorphic_bands>454 251 191 104</polymorphic_bands>
            </assay>
            <assay>
                <site>ATTTAAAT</site>
                <isoschizomers>
                    <enzyme>SmiI</enzyme>
                    <enzyme>SwaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGCAAGAGTTGATCCTAATG</pcr_primer_p1>
		<pcr_primer_p2>TACTGGTCAATAAGAGCCATAAA</pcr_primer_p2>
		<pcr_amplicon_size>428</pcr_amplicon_size>
		<canonical_amplicon>CGCAAGAGTTGATCCTAATGTGGGGAAGGAAAAGAGAGATAGTGGCAAGATCAAAGGGATGGGGGCAAGTCAGAAACGGGTAATCGAGATCTCAAGAAGTTTTTGGAATTGTGAGGGTGGTAAGAAGGTGGGGCAGTTCTTCACAATAGCGTTCCAAATTGGGATCGTTTGAGAAAAACAGTTCAAAGTGGTCTAAAAAAAAGTGCCTCTCAAAAATCGGTGAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTATTAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTAAATCTTTACAACCGAGCTATAGACTTTTGAAAATGGTCGTAATGTCAGAAAATCAAATTAACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTA</canonical_amplicon>
		<polymorphic_amplicon>CGCAAGAGTTGATCCTAATGTGGGGAAGGAAAAGAGAGATAGTGGCAAGATCAAAGGGATGGGGGCAAGTCAGAAACGGGTAATCGAGATCTCAAGAAGTTTTTGGAATTGTGAGGGTGGTAAGAAGGTGGGGCAGTTCTTCACAATAGCGTTCCAAATTGGGATCGTTTGAGAAAAACAGTTCAAAGTGGTCTAAAAAAAAGTGCCTCTCAAAAATCGGTGAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTATTAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTWAATCTTTACAACCGAGCTATAGACTTTTGAAAATGGTCGTAATGTCAGAAAATCAAATTAACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31014</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>233799</contig_pos>
        <strand></strand>
        <context>agctatagac[T/A]tttgaaaatg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CTATCGAAAATTTCAAAAGTGATTTAAATCTTTACAACCGAGCTATAGAC</left_flank>
        <right_flank>TTTGAAAATGGTCGTAATGTCAGAAAATCAAATTAACATTACGATTTTCT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTAATTTTTCAGCTATTTCCCGATATCTGAACGACACGTGGTTTTTTTTCTTTTTCAGTTATATATATTTCGTTTATTCGAAGGATTTGAAGAAGTACGGAGTGATGGTAACCGGGGAAAGAAAATAGTAAAAAACGAAGCTAAGAAGGACTAACCCGCAAGAGTTGATCCTAATGTGGGGAAGGAAAAGAGAGATAGTGGCAAGATCAAAGGGATGGGGGCAAGTCAGAAACGGGTAATCGAGATCTCAAGAAGTTTTTGGAATTGTGAGGGTGGTAAGAAGGTGGGGCAGTTCTTCACAATAGCGTTCCAAATTGGGATCGTTTGAGAAAAACAGTTCAAAGTGGTCTAAAAAAAAGTGCCTCTCAAAAATCGGTGAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTATTAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTAAATCTTTACAACCGAGCTATAGACTTTTGAAAATGGTCGTAATGTCAGAAAATCAAATTAACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTATTATAATTGCCTAACCCATACTTACTGTTGCTTTCAAAAATAATGGAGCAGCCACAGAAAATAGTAAAGATAGGACCGCGTGAGCTGTGATTTGAAACTTGACTCGAAGTGGCTCCGAAATCCTCGGGAGCACCGATAGAAGGAATAACCCTCCTACCAACGCATGCGGTATCATATAAAGATGGTCCTTGTACATTTTAAAATCAGACCATATCATTGTGATTAGCCCGACTTACGGGGGGGTGGGGGGGGGGGATAACACCAGTCGAACACTAAAGTCTCGACTGGTTCTTACACGAGTAAGTGGCAAATATAAGAAGCTCTCCCTGGGCGAGCACGGAGGTTTTGGAGGGGGCTAAGGGCCACAGAGATGGAACTAGAGAAAAAGAGCGCGAGCGGCGGGGCGGGCGGTCC</canonical>
            <polymorphic>TCCTAATTTTTCAGCTATTTCCCGATATCTGAACGACACGTGGTTTTTTTTCTTTTTCAGTTATATATATTTCGTTTATTCGAAGGATTTGAAGAAGTACGGAGTGATGGTAACCGGGGAAAGAAAATAGTAAAAAACGAAGCTAAGAAGGACTAACCCGCAAGAGTTGATCCTAATGTGGGGAAGGAAAAGAGAGATAGTGGCAAGATCAAAGGGATGGGGGCAAGTCAGAAACGGGTAATCGAGATCTCAAGAAGTTTTTGGAATTGTGAGGGTGGTAAGAAGGTGGGGCAGTTCTTCACAATAGCGTTCCAAATTGGGATCGTTTGAGAAAAACAGTTCAAAGTGGTCTAAAAAAAAGTGCCTCTCAAAAATCGGTGAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTATTAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTAAATCTTTACAACCGAGCTATAGACWTTTGAAAATGGTCGTAATGTCAGAAAATCAAATTAACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTATTATAATTGCCTAACCCATACTTACTGTTGCTTTCAAAAATAATGGAGCAGCCACAGAAAATAGTAAAGATAGGACCGCGTGAGCTGTGATTTGAAACTTGACTCGAAGTGGCTCCGAAATCCTCGGGAGCACCGATAGAAGGAATAACCCTCCTACCAACGCATGCGGTATCATATAAAGATGGTCCTTGTACATTTTAAAATCAGACCATATCATTGTGATTAGCCCGACTTACGGGGGGGTGGGGGGGGGGGATAACACCAGTCGAACACTAAAGTCTCGACTGGTTCTTACACGAGTAAGTGGCAAATATAAGAAGCTCTCCCTGGGCGAGCACGGAGGTTTTGGAGGGGGCTAAGGGCCACAGAGATGGAACTAGAGAAAAAGAGCGCGAGCGGCGGGGCGGGCGGTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCAAGAGTTGATCCTAATG</pcr_primer_p1>
		<pcr_primer_p2>TACTGGTCAATAAGAGCCATAAA</pcr_primer_p2>
		<pcr_amplicon_size>428</pcr_amplicon_size>
		<canonical_amplicon>CGCAAGAGTTGATCCTAATGTGGGGAAGGAAAAGAGAGATAGTGGCAAGATCAAAGGGATGGGGGCAAGTCAGAAACGGGTAATCGAGATCTCAAGAAGTTTTTGGAATTGTGAGGGTGGTAAGAAGGTGGGGCAGTTCTTCACAATAGCGTTCCAAATTGGGATCGTTTGAGAAAAACAGTTCAAAGTGGTCTAAAAAAAAGTGCCTCTCAAAAATCGGTGAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTATTAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTAAATCTTTACAACCGAGCTATAGACTTTTGAAAATGGTCGTAATGTCAGAAAATCAAATTAACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTA</canonical_amplicon>
		<polymorphic_amplicon>CGCAAGAGTTGATCCTAATGTGGGGAAGGAAAAGAGAGATAGTGGCAAGATCAAAGGGATGGGGGCAAGTCAGAAACGGGTAATCGAGATCTCAAGAAGTTTTTGGAATTGTGAGGGTGGTAAGAAGGTGGGGCAGTTCTTCACAATAGCGTTCCAAATTGGGATCGTTTGAGAAAAACAGTTCAAAGTGGTCTAAAAAAAAGTGCCTCTCAAAAATCGGTGAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTATTAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTAAATCTTTACAACCGAGCTATAGACWTTTGAAAATGGTCGTAATGTCAGAAAATCAAATTAACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31015</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>233819</contig_pos>
        <strand></strand>
        <context>ggtcgtaatg[T/C]cagaaaatca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GATTTAAATCTTTACAACCGAGCTATAGACTTTTGAAAATGGTCGTAATG</left_flank>
        <right_flank>CAGAAAATCAAATTAACATTACGATTTTCTGTGTCTTATGGACTTTATGG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCGATATCTGAACGACACGTGGTTTTTTTTCTTTTTCAGTTATATATATTTCGTTTATTCGAAGGATTTGAAGAAGTACGGAGTGATGGTAACCGGGGAAAGAAAATAGTAAAAAACGAAGCTAAGAAGGACTAACCCGCAAGAGTTGATCCTAATGTGGGGAAGGAAAAGAGAGATAGTGGCAAGATCAAAGGGATGGGGGCAAGTCAGAAACGGGTAATCGAGATCTCAAGAAGTTTTTGGAATTGTGAGGGTGGTAAGAAGGTGGGGCAGTTCTTCACAATAGCGTTCCAAATTGGGATCGTTTGAGAAAAACAGTTCAAAGTGGTCTAAAAAAAAGTGCCTCTCAAAAATCGGTGAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTATTAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTAAATCTTTACAACCGAGCTATAGACTTTTGAAAATGGTCGTAATGTCAGAAAATCAAATTAACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTATTATAATTGCCTAACCCATACTTACTGTTGCTTTCAAAAATAATGGAGCAGCCACAGAAAATAGTAAAGATAGGACCGCGTGAGCTGTGATTTGAAACTTGACTCGAAGTGGCTCCGAAATCCTCGGGAGCACCGATAGAAGGAATAACCCTCCTACCAACGCATGCGGTATCATATAAAGATGGTCCTTGTACATTTTAAAATCAGACCATATCATTGTGATTAGCCCGACTTACGGGGGGGTGGGGGGGGGGGATAACACCAGTCGAACACTAAAGTCTCGACTGGTTCTTACACGAGTAAGTGGCAAATATAAGAAGCTCTCCCTGGGCGAGCACGGAGGTTTTGGAGGGGGCTAAGGGCCACAGAGATGGAACTAGAGAAAAAGAGCGCGAGCGGCGGGGCGGGCGGTCCATTCGTCACAGCACATCGCG</canonical>
            <polymorphic>CCCGATATCTGAACGACACGTGGTTTTTTTTCTTTTTCAGTTATATATATTTCGTTTATTCGAAGGATTTGAAGAAGTACGGAGTGATGGTAACCGGGGAAAGAAAATAGTAAAAAACGAAGCTAAGAAGGACTAACCCGCAAGAGTTGATCCTAATGTGGGGAAGGAAAAGAGAGATAGTGGCAAGATCAAAGGGATGGGGGCAAGTCAGAAACGGGTAATCGAGATCTCAAGAAGTTTTTGGAATTGTGAGGGTGGTAAGAAGGTGGGGCAGTTCTTCACAATAGCGTTCCAAATTGGGATCGTTTGAGAAAAACAGTTCAAAGTGGTCTAAAAAAAAGTGCCTCTCAAAAATCGGTGAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTATTAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTAAATCTTTACAACCGAGCTATAGACTTTTGAAAATGGTCGTAATGYCAGAAAATCAAATTAACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTATTATAATTGCCTAACCCATACTTACTGTTGCTTTCAAAAATAATGGAGCAGCCACAGAAAATAGTAAAGATAGGACCGCGTGAGCTGTGATTTGAAACTTGACTCGAAGTGGCTCCGAAATCCTCGGGAGCACCGATAGAAGGAATAACCCTCCTACCAACGCATGCGGTATCATATAAAGATGGTCCTTGTACATTTTAAAATCAGACCATATCATTGTGATTAGCCCGACTTACGGGGGGGTGGGGGGGGGGGATAACACCAGTCGAACACTAAAGTCTCGACTGGTTCTTACACGAGTAAGTGGCAAATATAAGAAGCTCTCCCTGGGCGAGCACGGAGGTTTTGGAGGGGGCTAAGGGCCACAGAGATGGAACTAGAGAAAAAGAGCGCGAGCGGCGGGGCGGGCGGTCCATTCGTCACAGCACATCGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>292 228 200 180 90 10</canonical_bands>
                <polymorphic_bands>472 228 200 90 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGCAAGAGTTGATCCTAATG</pcr_primer_p1>
		<pcr_primer_p2>TACTGGTCAATAAGAGCCATAAA</pcr_primer_p2>
		<pcr_amplicon_size>428</pcr_amplicon_size>
		<canonical_amplicon>CGCAAGAGTTGATCCTAATGTGGGGAAGGAAAAGAGAGATAGTGGCAAGATCAAAGGGATGGGGGCAAGTCAGAAACGGGTAATCGAGATCTCAAGAAGTTTTTGGAATTGTGAGGGTGGTAAGAAGGTGGGGCAGTTCTTCACAATAGCGTTCCAAATTGGGATCGTTTGAGAAAAACAGTTCAAAGTGGTCTAAAAAAAAGTGCCTCTCAAAAATCGGTGAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTATTAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTAAATCTTTACAACCGAGCTATAGACTTTTGAAAATGGTCGTAATGTCAGAAAATCAAATTAACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTA</canonical_amplicon>
		<polymorphic_amplicon>CGCAAGAGTTGATCCTAATGTGGGGAAGGAAAAGAGAGATAGTGGCAAGATCAAAGGGATGGGGGCAAGTCAGAAACGGGTAATCGAGATCTCAAGAAGTTTTTGGAATTGTGAGGGTGGTAAGAAGGTGGGGCAGTTCTTCACAATAGCGTTCCAAATTGGGATCGTTTGAGAAAAACAGTTCAAAGTGGTCTAAAAAAAAGTGCCTCTCAAAAATCGGTGAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTATTAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTAAATCTTTACAACCGAGCTATAGACTTTTGAAAATGGTCGTAATGYCAGAAAATCAAATTAACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31016</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>233833</contig_pos>
        <strand></strand>
        <context>aaaatcaaat[T/C]aacattacga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAACCGAGCTATAGACTTTTGAAAATGGTCGTAATGTCAGAAAATCAAAT</left_flank>
        <right_flank>AACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACACGTGGTTTTTTTTCTTTTTCAGTTATATATATTTCGTTTATTCGAAGGATTTGAAGAAGTACGGAGTGATGGTAACCGGGGAAAGAAAATAGTAAAAAACGAAGCTAAGAAGGACTAACCCGCAAGAGTTGATCCTAATGTGGGGAAGGAAAAGAGAGATAGTGGCAAGATCAAAGGGATGGGGGCAAGTCAGAAACGGGTAATCGAGATCTCAAGAAGTTTTTGGAATTGTGAGGGTGGTAAGAAGGTGGGGCAGTTCTTCACAATAGCGTTCCAAATTGGGATCGTTTGAGAAAAACAGTTCAAAGTGGTCTAAAAAAAAGTGCCTCTCAAAAATCGGTGAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTATTAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTAAATCTTTACAACCGAGCTATAGACTTTTGAAAATGGTCGTAATGTCAGAAAATCAAATTAACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTATTATAATTGCCTAACCCATACTTACTGTTGCTTTCAAAAATAATGGAGCAGCCACAGAAAATAGTAAAGATAGGACCGCGTGAGCTGTGATTTGAAACTTGACTCGAAGTGGCTCCGAAATCCTCGGGAGCACCGATAGAAGGAATAACCCTCCTACCAACGCATGCGGTATCATATAAAGATGGTCCTTGTACATTTTAAAATCAGACCATATCATTGTGATTAGCCCGACTTACGGGGGGGTGGGGGGGGGGGATAACACCAGTCGAACACTAAAGTCTCGACTGGTTCTTACACGAGTAAGTGGCAAATATAAGAAGCTCTCCCTGGGCGAGCACGGAGGTTTTGGAGGGGGCTAAGGGCCACAGAGATGGAACTAGAGAAAAAGAGCGCGAGCGGCGGGGCGGGCGGTCCATTCGTCACAGCACATCGCGGGGCAGATGGCTCG</canonical>
            <polymorphic>GACACGTGGTTTTTTTTCTTTTTCAGTTATATATATTTCGTTTATTCGAAGGATTTGAAGAAGTACGGAGTGATGGTAACCGGGGAAAGAAAATAGTAAAAAACGAAGCTAAGAAGGACTAACCCGCAAGAGTTGATCCTAATGTGGGGAAGGAAAAGAGAGATAGTGGCAAGATCAAAGGGATGGGGGCAAGTCAGAAACGGGTAATCGAGATCTCAAGAAGTTTTTGGAATTGTGAGGGTGGTAAGAAGGTGGGGCAGTTCTTCACAATAGCGTTCCAAATTGGGATCGTTTGAGAAAAACAGTTCAAAGTGGTCTAAAAAAAAGTGCCTCTCAAAAATCGGTGAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTATTAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTAAATCTTTACAACCGAGCTATAGACTTTTGAAAATGGTCGTAATGTCAGAAAATCAAATYAACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTATTATAATTGCCTAACCCATACTTACTGTTGCTTTCAAAAATAATGGAGCAGCCACAGAAAATAGTAAAGATAGGACCGCGTGAGCTGTGATTTGAAACTTGACTCGAAGTGGCTCCGAAATCCTCGGGAGCACCGATAGAAGGAATAACCCTCCTACCAACGCATGCGGTATCATATAAAGATGGTCCTTGTACATTTTAAAATCAGACCATATCATTGTGATTAGCCCGACTTACGGGGGGGTGGGGGGGGGGGATAACACCAGTCGAACACTAAAGTCTCGACTGGTTCTTACACGAGTAAGTGGCAAATATAAGAAGCTCTCCCTGGGCGAGCACGGAGGTTTTGGAGGGGGCTAAGGGCCACAGAGATGGAACTAGAGAAAAAGAGCGCGAGCGGCGGGGCGGGCGGTCCATTCGTCACAGCACATCGCGGGGCAGATGGCTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>395 251 250 60 44</canonical_bands>
                <polymorphic_bands>395 311 250 44</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>444 230 109 73 60 50 34</canonical_bands>
                <polymorphic_bands>444 230 133 109 50 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGCAAGAGTTGATCCTAATG</pcr_primer_p1>
		<pcr_primer_p2>AATACTGGTCAATAAGAGCCATA</pcr_primer_p2>
		<pcr_amplicon_size>430</pcr_amplicon_size>
		<canonical_amplicon>CGCAAGAGTTGATCCTAATGTGGGGAAGGAAAAGAGAGATAGTGGCAAGATCAAAGGGATGGGGGCAAGTCAGAAACGGGTAATCGAGATCTCAAGAAGTTTTTGGAATTGTGAGGGTGGTAAGAAGGTGGGGCAGTTCTTCACAATAGCGTTCCAAATTGGGATCGTTTGAGAAAAACAGTTCAAAGTGGTCTAAAAAAAAGTGCCTCTCAAAAATCGGTGAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTATTAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTAAATCTTTACAACCGAGCTATAGACTTTTGAAAATGGTCGTAATGTCAGAAAATCAAATTAACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTATT</canonical_amplicon>
		<polymorphic_amplicon>CGCAAGAGTTGATCCTAATGTGGGGAAGGAAAAGAGAGATAGTGGCAAGATCAAAGGGATGGGGGCAAGTCAGAAACGGGTAATCGAGATCTCAAGAAGTTTTTGGAATTGTGAGGGTGGTAAGAAGGTGGGGCAGTTCTTCACAATAGCGTTCCAAATTGGGATCGTTTGAGAAAAACAGTTCAAAGTGGTCTAAAAAAAAGTGCCTCTCAAAAATCGGTGAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTATTAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTAAATCTTTACAACCGAGCTATAGACTTTTGAAAATGGTCGTAATGTCAGAAAATCAAATYAACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31017</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>234122</contig_pos>
        <strand>+</strand>
        <context>CCCGACTTAC[G/T]GGGGGGTGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCTTGTACATTTTAAAATCAGACCATATCATTGTGATTAGCCCGACTTAC</left_flank>
        <right_flank>GGGGGGTGGGGGGGGGGGATAACACCAGTCGAACACTAAAGTCTCGACTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTTGAGAAAAACAGTTCAAAGTGGTCTAAAAAAAAGTGCCTCTCAAAAATCGGTGAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTATTAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTAAATCTTTACAACCGAGCTATAGACTTTTGAAAATGGTCGTAATGTCAGAAAATCAAATTAACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTATTATAATTGCCTAACCCATACTTACTGTTGCTTTCAAAAATAATGGAGCAGCCACAGAAAATAGTAAAGATAGGACCGCGTGAGCTGTGATTTGAAACTTGACTCGAAGTGGCTCCGAAATCCTCGGGAGCACCGATAGAAGGAATAACCCTCCTACCAACGCATGCGGTATCATATAAAGATGGTCCTTGTACATTTTAAAATCAGACCATATCATTGTGATTAGCCCGACTTACGGGGGGGTGGGGGGGGGGGATAACACCAGTCGAACACTAAAGTCTCGACTGGTTCTTACACGAGTAAGTGGCAAATATAAGAAGCTCTCCCTGGGCGAGCACGGAGGTTTTGGAGGGGGCTAAGGGCCACAGAGATGGAACTAGAGAAAAAGAGCGCGAGCGGCGGGGCGGGCGGTCCATTCGTCACAGCACATCGCGGGGCAGATGGCTCGCGGAAGGAAAACCGAACGTGGTGAAGAACGTGGTGCACAAGAGAGAAGACACACAGAGGCAAAAGAAACGGGACGCGCCAAGTCGTCTGGGTGGGAGGGTGATGGTCAGTAGTTGCGCGTCCCTCGGAGAAGAATTCCCAAATGCCACTCTCTTTGAGCATTTCCAATGAGCTCCCTTGTGTATATGTCACCGTTTGCGAATGTGTGCTGGTGGAAAAAAAGAAGAAGAGAGGGGATTGAATTTTTGGGAAGAACGTTAACCACAAACAACACACTTACCATAACAAAC</canonical>
            <polymorphic>CGTTTGAGAAAAACAGTTCAAAGTGGTCTAAAAAAAAGTGCCTCTCAAAAATCGGTGAATAACTGAAAAACTAGGATTTTCGAAAGTTTTGGAAACGCAAAATTATTAATCTGGGCCTATTTTGCACTATCGAAAATTTCAAAAGTGATTTAAATCTTTACAACCGAGCTATAGACTTTTGAAAATGGTCGTAATGTCAGAAAATCAAATTAACATTACGATTTTCTGTGTCTTATGGACTTTATGGCTCTTATTGACCAGTATTATAATTGCCTAACCCATACTTACTGTTGCTTTCAAAAATAATGGAGCAGCCACAGAAAATAGTAAAGATAGGACCGCGTGAGCTGTGATTTGAAACTTGACTCGAAGTGGCTCCGAAATCCTCGGGAGCACCGATAGAAGGAATAACCCTCCTACCAACGCATGCGGTATCATATAAAGATGGTCCTTGTACATTTTAAAATCAGACCATATCATTGTGATTAGCCCGACTTACKGGGGGGTGGGGGGGGGGGATAACACCAGTCGAACACTAAAGTCTCGACTGGTTCTTACACGAGTAAGTGGCAAATATAAGAAGCTCTCCCTGGGCGAGCACGGAGGTTTTGGAGGGGGCTAAGGGCCACAGAGATGGAACTAGAGAAAAAGAGCGCGAGCGGCGGGGCGGGCGGTCCATTCGTCACAGCACATCGCGGGGCAGATGGCTCGCGGAAGGAAAACCGAACGTGGTGAAGAACGTGGTGCACAAGAGAGAAGACACACAGAGGCAAAAGAAACGGGACGCGCCAAGTCGTCTGGGTGGGAGGGTGATGGTCAGTAGTTGCGCGTCCCTCGGAGAAGAATTCCCAAATGCCACTCTCTTTGAGCATTTCCAATGAGCTCCCTTGTGTATATGTCACCGTTTGCGAATGTGTGCTGGTGGAAAAAAAGAAGAAGAGAGGGGATTGAATTTTTGGGAAGAACGTTAACCACAAACAACACACTTACCATAACAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>503 402 95</canonical_bands>
                <polymorphic_bands>598 402</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGAAGGAATAACCCTCCTACC</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTCTAGTTCCATCTCTGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGAAGGAATAACCCTCCTACCAACGCATGCGGTATCATATAAAGATGGTCCTTGTACATTTTAAAATCAGACCATATCATTGTGATTAGCCCGACTTACGGGGGGGTGGGGGGGGGGGATAACACCAGTCGAACACTAAAGTCTCGACTGGTTCTTACACGAGTAAGTGGCAAATATAAGAAGCTCTCCCTGGGCGAGCACGGAGGTTTTGGAGGGGGCTAAGGGCCACAGAGATGGAACTAGAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TAGAAGGAATAACCCTCCTACCAACGCATGCGGTATCATATAAAGATGGTCCTTGTACATTTTAAAATCAGACCATATCATTGTGATTAGCCCGACTTACKGGGGGGTGGGGGGGGGGGATAACACCAGTCGAACACTAAAGTCTCGACTGGTTCTTACACGAGTAAGTGGCAAATATAAGAAGCTCTCCCTGGGCGAGCACGGAGGTTTTGGAGGGGGCTAAGGGCCACAGAGATGGAACTAGAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31018</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>310344</contig_pos>
        <strand></strand>
        <context>cttatcattt[T/C]acggaatctg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTT</left_flank>
        <right_flank>ACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGGCGCCTCGTTCTCAACCACCGCGTGTTGCCCGTTGATTTCTTCTGAAGACCGATGTGCTCAACGTAGAGATACGGGAGAAGGAGATGAGCTAGTTGCTAGATGGTACTTTGATAGTCAGGCCAAGGAATGCAGGCGGTTTTTGTACAAGGGAATCCGAGGAAATGCTAATAACTTTGTCACCAAAGCGCAATGTGTTGATGCATGTGAAGCAGGTGCAGTAATTCTAATCATATCAGTTTCAGAGGGCATATAATTAAGAGGGTTCAAGGATTCGGAGGTACAACGGGTCACAAACGATATAGTGACACAAAAGCCAAACTCGGGGCTTAGAATTCGAATTTTTCAAGTAATTTGCACCCCCGACACAAGGGTTTTGTAACCTCAAATCGGCATGTACTCCAGTGACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAA</canonical>
            <polymorphic>CGGGCGCCTCGTTCTCAACCACCGCGTGTTGCCCGTTGATTTCTTCTGAAGACCGATGTGCTCAACGTAGAGATACGGGAGAAGGAGATGAGCTAGTTGCTAGATGGTACTTTGATAGTCAGGCCAAGGAATGCAGGCGGTTTTTGTACAAGGGAATCCGAGGAAATGCTAATAACTTTGTCACCAAAGCGCAATGTGTTGATGCATGTGAAGCAGGTGCAGTAATTCTAATCATATCAGTTTCAGAGGGCATATAATTAAGAGGGTTCAAGGATTCGGAGGTACAACGGGTCACAAACGATATAGTGACACAAAAGCCAAACTCGGGGCTTAGAATTCGAATTTTTCAAGTAATTTGCACCCCCGACACAAGGGTTTTGTAACCTCAAATCGGCATGTACTCCAGTGACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTYACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCCCAAAGTTTTCATACC</pcr_primer_p1>
		<pcr_primer_p2>CTATTTAAACATCAAATCGTCGT</pcr_primer_p2>
		<pcr_amplicon_size>436</pcr_amplicon_size>
		<canonical_amplicon>GACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAG</canonical_amplicon>
		<polymorphic_amplicon>GACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTYACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31019</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>310384</contig_pos>
        <strand></strand>
        <context>ccgattactt[T/C]gaamattttg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTT</left_flank>
        <right_flank>GAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTCTGAAGACCGATGTGCTCAACGTAGAGATACGGGAGAAGGAGATGAGCTAGTTGCTAGATGGTACTTTGATAGTCAGGCCAAGGAATGCAGGCGGTTTTTGTACAAGGGAATCCGAGGAAATGCTAATAACTTTGTCACCAAAGCGCAATGTGTTGATGCATGTGAAGCAGGTGCAGTAATTCTAATCATATCAGTTTCAGAGGGCATATAATTAAGAGGGTTCAAGGATTCGGAGGTACAACGGGTCACAAACGATATAGTGACACAAAAGCCAAACTCGGGGCTTAGAATTCGAATTTTTCAAGTAATTTGCACCCCCGACACAAGGGTTTTGTAACCTCAAATCGGCATGTACTCCAGTGACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAA</canonical>
            <polymorphic>TTCTTCTGAAGACCGATGTGCTCAACGTAGAGATACGGGAGAAGGAGATGAGCTAGTTGCTAGATGGTACTTTGATAGTCAGGCCAAGGAATGCAGGCGGTTTTTGTACAAGGGAATCCGAGGAAATGCTAATAACTTTGTCACCAAAGCGCAATGTGTTGATGCATGTGAAGCAGGTGCAGTAATTCTAATCATATCAGTTTCAGAGGGCATATAATTAAGAGGGTTCAAGGATTCGGAGGTACAACGGGTCACAAACGATATAGTGACACAAAAGCCAAACTCGGGGCTTAGAATTCGAATTTTTCAAGTAATTTGCACCCCCGACACAAGGGTTTTGTAACCTCAAATCGGCATGTACTCCAGTGACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTYGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCCCAAAGTTTTCATACC</pcr_primer_p1>
		<pcr_primer_p2>CTATTTAAACATCAAATCGTCGT</pcr_primer_p2>
		<pcr_amplicon_size>436</pcr_amplicon_size>
		<canonical_amplicon>GACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAG</canonical_amplicon>
		<polymorphic_amplicon>GACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTYGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31020</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>310388</contig_pos>
        <strand></strand>
        <context>ttacttygaa[A/C]attttggagg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAA</left_flank>
        <right_flank>ATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGAAGACCGATGTGCTCAACGTAGAGATACGGGAGAAGGAGATGAGCTAGTTGCTAGATGGTACTTTGATAGTCAGGCCAAGGAATGCAGGCGGTTTTTGTACAAGGGAATCCGAGGAAATGCTAATAACTTTGTCACCAAAGCGCAATGTGTTGATGCATGTGAAGCAGGTGCAGTAATTCTAATCATATCAGTTTCAGAGGGCATATAATTAAGAGGGTTCAAGGATTCGGAGGTACAACGGGTCACAAACGATATAGTGACACAAAAGCCAAACTCGGGGCTTAGAATTCGAATTTTTCAAGTAATTTGCACCCCCGACACAAGGGTTTTGTAACCTCAAATCGGCATGTACTCCAGTGACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATC</canonical>
            <polymorphic>TCTGAAGACCGATGTGCTCAACGTAGAGATACGGGAGAAGGAGATGAGCTAGTTGCTAGATGGTACTTTGATAGTCAGGCCAAGGAATGCAGGCGGTTTTTGTACAAGGGAATCCGAGGAAATGCTAATAACTTTGTCACCAAAGCGCAATGTGTTGATGCATGTGAAGCAGGTGCAGTAATTCTAATCATATCAGTTTCAGAGGGCATATAATTAAGAGGGTTCAAGGATTCGGAGGTACAACGGGTCACAAACGATATAGTGACACAAAAGCCAAACTCGGGGCTTAGAATTCGAATTTTTCAAGTAATTTGCACCCCCGACACAAGGGTTTTGTAACCTCAAATCGGCATGTACTCCAGTGACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAMATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>290 203 182 148 97 74 6</canonical_bands>
                <polymorphic_bands>351 290 182 97 74 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>182 179 122 118 80 79 69 42 32 32 30 17 12 6</canonical_bands>
                <polymorphic_bands>187 182 179 122 80 79 42 32 32 30 17 12 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACCCCAAAGTTTTCATACC</pcr_primer_p1>
		<pcr_primer_p2>CTATTTAAACATCAAATCGTCGT</pcr_primer_p2>
		<pcr_amplicon_size>436</pcr_amplicon_size>
		<canonical_amplicon>GACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAG</canonical_amplicon>
		<polymorphic_amplicon>GACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAMATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31021</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>310408</contig_pos>
        <strand></strand>
        <context>gtcataaaac[G/A]gacctcgatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAAC</left_flank>
        <right_flank>GACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGTAGAGATACGGGAGAAGGAGATGAGCTAGTTGCTAGATGGTACTTTGATAGTCAGGCCAAGGAATGCAGGCGGTTTTTGTACAAGGGAATCCGAGGAAATGCTAATAACTTTGTCACCAAAGCGCAATGTGTTGATGCATGTGAAGCAGGTGCAGTAATTCTAATCATATCAGTTTCAGAGGGCATATAATTAAGAGGGTTCAAGGATTCGGAGGTACAACGGGTCACAAACGATATAGTGACACAAAAGCCAAACTCGGGGCTTAGAATTCGAATTTTTCAAGTAATTTGCACCCCCGACACAAGGGTTTTGTAACCTCAAATCGGCATGTACTCCAGTGACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAA</canonical>
            <polymorphic>ACGTAGAGATACGGGAGAAGGAGATGAGCTAGTTGCTAGATGGTACTTTGATAGTCAGGCCAAGGAATGCAGGCGGTTTTTGTACAAGGGAATCCGAGGAAATGCTAATAACTTTGTCACCAAAGCGCAATGTGTTGATGCATGTGAAGCAGGTGCAGTAATTCTAATCATATCAGTTTCAGAGGGCATATAATTAAGAGGGTTCAAGGATTCGGAGGTACAACGGGTCACAAACGATATAGTGACACAAAAGCCAAACTCGGGGCTTAGAATTCGAATTTTTCAAGTAATTTGCACCCCCGACACAAGGGTTTTGTAACCTCAAATCGGCATGTACTCCAGTGACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACRGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACCCCAAAGTTTTCATACC</pcr_primer_p1>
		<pcr_primer_p2>CTATTTAAACATCAAATCGTCGT</pcr_primer_p2>
		<pcr_amplicon_size>436</pcr_amplicon_size>
		<canonical_amplicon>GACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAG</canonical_amplicon>
		<polymorphic_amplicon>GACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACRGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31022</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>310422</contig_pos>
        <strand></strand>
        <context>ctcgattgaa[A/T]actttgcatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAA</left_flank>
        <right_flank>ACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAAGGAGATGAGCTAGTTGCTAGATGGTACTTTGATAGTCAGGCCAAGGAATGCAGGCGGTTTTTGTACAAGGGAATCCGAGGAAATGCTAATAACTTTGTCACCAAAGCGCAATGTGTTGATGCATGTGAAGCAGGTGCAGTAATTCTAATCATATCAGTTTCAGAGGGCATATAATTAAGAGGGTTCAAGGATTCGGAGGTACAACGGGTCACAAACGATATAGTGACACAAAAGCCAAACTCGGGGCTTAGAATTCGAATTTTTCAAGTAATTTGCACCCCCGACACAAGGGTTTTGTAACCTCAAATCGGCATGTACTCCAGTGACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCA</canonical>
            <polymorphic>GAGAAGGAGATGAGCTAGTTGCTAGATGGTACTTTGATAGTCAGGCCAAGGAATGCAGGCGGTTTTTGTACAAGGGAATCCGAGGAAATGCTAATAACTTTGTCACCAAAGCGCAATGTGTTGATGCATGTGAAGCAGGTGCAGTAATTCTAATCATATCAGTTTCAGAGGGCATATAATTAAGAGGGTTCAAGGATTCGGAGGTACAACGGGTCACAAACGATATAGTGACACAAAAGCCAAACTCGGGGCTTAGAATTCGAATTTTTCAAGTAATTTGCACCCCCGACACAAGGGTTTTGTAACCTCAAATCGGCATGTACTCCAGTGACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAWACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCCCAAAGTTTTCATACC</pcr_primer_p1>
		<pcr_primer_p2>CTATTTAAACATCAAATCGTCGT</pcr_primer_p2>
		<pcr_amplicon_size>436</pcr_amplicon_size>
		<canonical_amplicon>GACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAG</canonical_amplicon>
		<polymorphic_amplicon>GACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAWACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31023</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>310438</contig_pos>
        <strand></strand>
        <context>gcattcacag[T/A]attttttgaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAG</left_flank>
        <right_flank>ATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTGCTAGATGGTACTTTGATAGTCAGGCCAAGGAATGCAGGCGGTTTTTGTACAAGGGAATCCGAGGAAATGCTAATAACTTTGTCACCAAAGCGCAATGTGTTGATGCATGTGAAGCAGGTGCAGTAATTCTAATCATATCAGTTTCAGAGGGCATATAATTAAGAGGGTTCAAGGATTCGGAGGTACAACGGGTCACAAACGATATAGTGACACAAAAGCCAAACTCGGGGCTTAGAATTCGAATTTTTCAAGTAATTTGCACCCCCGACACAAGGGTTTTGTAACCTCAAATCGGCATGTACTCCAGTGACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCATTATTTGCGGTCCGAA</canonical>
            <polymorphic>AGTTGCTAGATGGTACTTTGATAGTCAGGCCAAGGAATGCAGGCGGTTTTTGTACAAGGGAATCCGAGGAAATGCTAATAACTTTGTCACCAAAGCGCAATGTGTTGATGCATGTGAAGCAGGTGCAGTAATTCTAATCATATCAGTTTCAGAGGGCATATAATTAAGAGGGTTCAAGGATTCGGAGGTACAACGGGTCACAAACGATATAGTGACACAAAAGCCAAACTCGGGGCTTAGAATTCGAATTTTTCAAGTAATTTGCACCCCCGACACAAGGGTTTTGTAACCTCAAATCGGCATGTACTCCAGTGACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGWATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCATTATTTGCGGTCCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>498 216 206 55 25</canonical_bands>
                <polymorphic_bands>714 206 55 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACCCCAAAGTTTTCATACC</pcr_primer_p1>
		<pcr_primer_p2>CTATTTAAACATCAAATCGTCGT</pcr_primer_p2>
		<pcr_amplicon_size>436</pcr_amplicon_size>
		<canonical_amplicon>GACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAG</canonical_amplicon>
		<polymorphic_amplicon>GACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGWATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31024</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>310505</contig_pos>
        <strand></strand>
        <context>gaaaaaagca[T/G]aakttcttca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCA</left_flank>
        <right_flank>AATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAATGCTAATAACTTTGTCACCAAAGCGCAATGTGTTGATGCATGTGAAGCAGGTGCAGTAATTCTAATCATATCAGTTTCAGAGGGCATATAATTAAGAGGGTTCAAGGATTCGGAGGTACAACGGGTCACAAACGATATAGTGACACAAAAGCCAAACTCGGGGCTTAGAATTCGAATTTTTCAAGTAATTTGCACCCCCGACACAAGGGTTTTGTAACCTCAAATCGGCATGTACTCCAGTGACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCATTATTTGCGGTCCGAACGATGACTCCATGTGTCCGAACGGCTATTACTGTCATATCGGCGAGAACCCGGAACTGACGGCTTGC</canonical>
            <polymorphic>GGAAATGCTAATAACTTTGTCACCAAAGCGCAATGTGTTGATGCATGTGAAGCAGGTGCAGTAATTCTAATCATATCAGTTTCAGAGGGCATATAATTAAGAGGGTTCAAGGATTCGGAGGTACAACGGGTCACAAACGATATAGTGACACAAAAGCCAAACTCGGGGCTTAGAATTCGAATTTTTCAAGTAATTTGCACCCCCGACACAAGGGTTTTGTAACCTCAAATCGGCATGTACTCCAGTGACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCAKAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCATTATTTGCGGTCCGAACGATGACTCCATGTGTCCGAACGGCTATTACTGTCATATCGGCGAGAACCCGGAACTGACGGCTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCCCAAAGTTTTCATACC</pcr_primer_p1>
		<pcr_primer_p2>CTATTTAAACATCAAATCGTCGT</pcr_primer_p2>
		<pcr_amplicon_size>436</pcr_amplicon_size>
		<canonical_amplicon>GACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAG</canonical_amplicon>
		<polymorphic_amplicon>GACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCAKAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31025</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>310508</contig_pos>
        <strand></strand>
        <context>aaaagcakaa[T/G]ttcttcagaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAA</left_flank>
        <right_flank>TTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGCTAATAACTTTGTCACCAAAGCGCAATGTGTTGATGCATGTGAAGCAGGTGCAGTAATTCTAATCATATCAGTTTCAGAGGGCATATAATTAAGAGGGTTCAAGGATTCGGAGGTACAACGGGTCACAAACGATATAGTGACACAAAAGCCAAACTCGGGGCTTAGAATTCGAATTTTTCAAGTAATTTGCACCCCCGACACAAGGGTTTTGTAACCTCAAATCGGCATGTACTCCAGTGACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCATTATTTGCGGTCCGAACGATGACTCCATGTGTCCGAACGGCTATTACTGTCATATCGGCGAGAACCCGGAACTGACGGCTTGCTGC</canonical>
            <polymorphic>AATGCTAATAACTTTGTCACCAAAGCGCAATGTGTTGATGCATGTGAAGCAGGTGCAGTAATTCTAATCATATCAGTTTCAGAGGGCATATAATTAAGAGGGTTCAAGGATTCGGAGGTACAACGGGTCACAAACGATATAGTGACACAAAAGCCAAACTCGGGGCTTAGAATTCGAATTTTTCAAGTAATTTGCACCCCCGACACAAGGGTTTTGTAACCTCAAATCGGCATGTACTCCAGTGACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAAKTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCATTATTTGCGGTCCGAACGATGACTCCATGTGTCCGAACGGCTATTACTGTCATATCGGCGAGAACCCGGAACTGACGGCTTGCTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>200 182 122 118 79 69 59 42 32 32 30 17 12 6</canonical_bands>
                <polymorphic_bands>200 182 148 122 79 69 59 42 32 32 17 12 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACCCCAAAGTTTTCATACC</pcr_primer_p1>
		<pcr_primer_p2>CTATTTAAACATCAAATCGTCGT</pcr_primer_p2>
		<pcr_amplicon_size>436</pcr_amplicon_size>
		<canonical_amplicon>GACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAG</canonical_amplicon>
		<polymorphic_amplicon>GACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAAKTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31026</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>310715</contig_pos>
        <strand>+</strand>
        <context>AGTACAAAAT[A/T]CGAATTTTTS</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAAT</left_flank>
        <right_flank>CGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGGTTTTGTAACCTCAAATCGGCATGTACTCCAGTGACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCATTATTTGCGGTCCGAACGATGACTCCATGTGTCCGAACGGCTATTACTGTCATATCGGCGAGAACCCGGAACTGACGGCTTGCTGCGAGAACAGTGGACGTGAGCATTTTTTTCTTTATTGTACCTGGCTGTCCATTTCTATTTGTTTTCTACTCCGCTTTTCCCCCAGTACCTTTTCAAAATTTTTGTTTATTTTCATTTTACAGTGACCGATCCTTGCTTACTCTCCATCAATGTTGGCCAAGGTAAAGCCCTACTCAAGCGATTCTACTACAACACTTTCTCGAAGAGAT</canonical>
            <polymorphic>AGGGTTTTGTAACCTCAAATCGGCATGTACTCCAGTGACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATWCGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCATTATTTGCGGTCCGAACGATGACTCCATGTGTCCGAACGGCTATTACTGTCATATCGGCGAGAACCCGGAACTGACGGCTTGCTGCGAGAACAGTGGACGTGAGCATTTTTTTCTTTATTGTACCTGGCTGTCCATTTCTATTTGTTTTCTACTCCGCTTTTCCCCCAGTACCTTTTCAAAATTTTTGTTTATTTTCATTTTACAGTGACCGATCCTTGCTTACTCTCCATCAATGTTGGCCAAGGTAAAGCCCTACTCAAGCGATTCTACTACAACACTTTCTCGAAGAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCCCAAAGTTTTCATACC</pcr_primer_p1>
		<pcr_primer_p2>GGTAAAAACCGATTTAGACGTA</pcr_primer_p2>
		<pcr_amplicon_size>526</pcr_amplicon_size>
		<canonical_amplicon>GACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACC</canonical_amplicon>
		<polymorphic_amplicon>GACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATWCGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31027</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>310725</contig_pos>
        <strand>+</strand>
        <context>WCGAATTTTT[C/G]AGATATTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTT</left_flank>
        <right_flank>AGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCTCAAATCGGCATGTACTCCAGTGACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCATTATTTGCGGTCCGAACGATGACTCCATGTGTCCGAACGGCTATTACTGTCATATCGGCGAGAACCCGGAACTGACGGCTTGCTGCGAGAACAGTGGACGTGAGCATTTTTTTCTTTATTGTACCTGGCTGTCCATTTCTATTTGTTTTCTACTCCGCTTTTCCCCCAGTACCTTTTCAAAATTTTTGTTTATTTTCATTTTACAGTGACCGATCCTTGCTTACTCTCCATCAATGTTGGCCAAGGTAAAGCCCTACTCAAGCGATTCTACTACAACACTTTCTCGAAGAGATGCACCGAGTT</canonical>
            <polymorphic>AACCTCAAATCGGCATGTACTCCAGTGACCCCAAAGTTTTCATACCCTCCGAGTTCCAGAATCAATAAGATATACAAAAACGTATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTSAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCATTATTTGCGGTCCGAACGATGACTCCATGTGTCCGAACGGCTATTACTGTCATATCGGCGAGAACCCGGAACTGACGGCTTGCTGCGAGAACAGTGGACGTGAGCATTTTTTTCTTTATTGTACCTGGCTGTCCATTTCTATTTGTTTTCTACTCCGCTTTTCCCCCAGTACCTTTTCAAAATTTTTGTTTATTTTCATTTTACAGTGACCGATCCTTGCTTACTCTCCATCAATGTTGGCCAAGGTAAAGCCCTACTCAAGCGATTCTACTACAACACTTTCTCGAAGAGATGCACCGAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>269 211 140 100 83 81 50 45 21</canonical_bands>
                <polymorphic_bands>292 269 140 100 83 50 45 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACGATTTGATGTTTAAATAGGT</pcr_primer_p1>
		<pcr_primer_p2>GCGACTACCGTTCTTATACTTG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>GACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGC</canonical_amplicon>
		<polymorphic_amplicon>GACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTSAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31028</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>310808</contig_pos>
        <strand>+</strand>
        <context>TGTACCCTCC[A/G]AATTATATGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCC</left_flank>
        <right_flank>AATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCATTATTTGCGGTCCGAACGATGACTCCATGTGTCCGAACGGCTATTACTGTCATATCGGCGAGAACCCGGAACTGACGGCTTGCTGCGAGAACAGTGGACGTGAGCATTTTTTTCTTTATTGTACCTGGCTGTCCATTTCTATTTGTTTTCTACTCCGCTTTTCCCCCAGTACCTTTTCAAAATTTTTGTTTATTTTCATTTTACAGTGACCGATCCTTGCTTACTCTCCATCAATGTTGGCCAAGGTAAAGCCCTACTCAAGCGATTCTACTACAACACTTTCTCGAAGAGATGCACCGAGTTCATGTACAAGGGAACCAAGGGAAACGAGAACAACTTTTTGTCATACACACAGTGTCAAGAGAAATGTCAAAGTAGGAAAATCA</canonical>
            <polymorphic>ATTTTATTTCAATTGATTTGCCATTCTTATCATTTTACGGAATCTGGAGCTCGGCTGTCAAGATTCCGATTACTTTGAAAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCRAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCATTATTTGCGGTCCGAACGATGACTCCATGTGTCCGAACGGCTATTACTGTCATATCGGCGAGAACCCGGAACTGACGGCTTGCTGCGAGAACAGTGGACGTGAGCATTTTTTTCTTTATTGTACCTGGCTGTCCATTTCTATTTGTTTTCTACTCCGCTTTTCCCCCAGTACCTTTTCAAAATTTTTGTTTATTTTCATTTTACAGTGACCGATCCTTGCTTACTCTCCATCAATGTTGGCCAAGGTAAAGCCCTACTCAAGCGATTCTACTACAACACTTTCTCGAAGAGATGCACCGAGTTCATGTACAAGGGAACCAAGGGAAACGAGAACAACTTTTTGTCATACACACAGTGTCAAGAGAAATGTCAAAGTAGGAAAATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>352 211 140 83 81 67 45 21</canonical_bands>
                <polymorphic_bands>352 211 140 126 83 67 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGAAAGTGAGTTGGGAGTACA</pcr_primer_p1>
		<pcr_primer_p2>TAATGCGACTACCGTTCTTATAC</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>GTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCATTA</canonical_amplicon>
		<polymorphic_amplicon>GTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCRAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31029</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>310886</contig_pos>
        <strand>+</strand>
        <context>TCCATGCAAG[A/T]TCAGTAACGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAG</left_flank>
        <right_flank>TCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCATTATTTGCGGTCCG</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCATTATTTGCGGTCCGAACGATGACTCCATGTGTCCGAACGGCTATTACTGTCATATCGGCGAGAACCCGGAACTGACGGCTTGCTGCGAGAACAGTGGACGTGAGCATTTTTTTCTTTATTGTACCTGGCTGTCCATTTCTATTTGTTTTCTACTCCGCTTTTCCCCCAGTACCTTTTCAAAATTTTTGTTTATTTTCATTTTACAGTGACCGATCCTTGCTTACTCTCCATCAATGTTGGCCAAGGTAAAGCCCTACTCAAGCGATTCTACTACAACACTTTCTCGAAGAGATGCACCGAGTTCATGTACAAGGGAACCAAGGGAAACGAGAACAACTTTTTGTCATACACACAGTGTCAAGAGAAATGTCAAAGTAGGAAAATCAATTTGACTAGAAATTTTCATAAAATCTCATTTTTCAGAATGGGATAATCCATGTCCAGTGGCTGTCAATTATGCTCAA</canonical>
            <polymorphic>AAATTTTGGAGGTCATAAAACGGACCTCGATTGAAAACTTTGCATTCACAGTATTTTTTGAAATCTCCTGGTTTTTCAGCTAGTTGCTTGTTTTTGTACTGAAAACGTGAAAAAAGCATAATTTCTTCAGAAATCGGGAAATAGCTGAAAATTTTCTTTCAAACTGATTTAGACACTCACCGGTCAAGCTGCTGACCCCTGAAAGTGATAAAAATGACCCAATATTAGGTGAAAAACACGTTTTCATATATATTATAGCTGGTACTGTATTGGAGCGTACGACGATTTGATGTTTAAATAGGTAGAAAGTGAGTTGGGAGTACAAAATACGAATTTTTCAGATATTTTGTCCCACTAATAGACAATTTTTACGTCTAAATCGGTTTTTACCCCAATGACCACCAGAATTCTTGTACCCTCCGAATTATATGCCGTTCCAGAGCTCAGCTAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGWTCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCATTATTTGCGGTCCGAACGATGACTCCATGTGTCCGAACGGCTATTACTGTCATATCGGCGAGAACCCGGAACTGACGGCTTGCTGCGAGAACAGTGGACGTGAGCATTTTTTTCTTTATTGTACCTGGCTGTCCATTTCTATTTGTTTTCTACTCCGCTTTTCCCCCAGTACCTTTTCAAAATTTTTGTTTATTTTCATTTTACAGTGACCGATCCTTGCTTACTCTCCATCAATGTTGGCCAAGGTAAAGCCCTACTCAAGCGATTCTACTACAACACTTTCTCGAAGAGATGCACCGAGTTCATGTACAAGGGAACCAAGGGAAACGAGAACAACTTTTTGTCATACACACAGTGTCAAGAGAAATGTCAAAGTAGGAAAATCAATTTGACTAGAAATTTTCATAAAATCTCATTTTTCAGAATGGGATAATCCATGTCCAGTGGCTGTCAATTATGCTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>498 253 249</canonical_bands>
                <polymorphic_bands>747 253</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAACCCAAAACCATTTCAGA</pcr_primer_p1>
		<pcr_primer_p2>AAAGCGGAGTAGAAAACAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGATCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCATTATTTGCGGTCCGAACGATGACTCCATGTGTCCGAACGGCTATTACTGTCATATCGGCGAGAACCCGGAACTGACGGCTTGCTGCGAGAACAGTGGACGTGAGCATTTTTTTCTTTATTGTACCTGGCTGTCCATTTCTATTTGTTTTCTACTCCGCTTT</canonical_amplicon>
		<polymorphic_amplicon>TAACCCAAAACCATTTCAGAAACCGTGACCGATGAGACAAATCCATGCAAGWTCAGTAACGCGGCCAAGTATAAGAACGGTAGTCGCATTATTTGCGGTCCGAACGATGACTCCATGTGTCCGAACGGCTATTACTGTCATATCGGCGAGAACCCGGAACTGACGGCTTGCTGCGAGAACAGTGGACGTGAGCATTTTTTTCTTTATTGTACCTGGCTGTCCATTTCTATTTGTTTTCTACTCCGCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31030</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>313245</contig_pos>
        <strand></strand>
        <context>gtgtaaaaca[T/G]tccagkttga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CGGCTGTCAAGTTTTCAAACATTTTGAATTTTTTTGTTGGGTGTAAAACA</left_flank>
        <right_flank>TCCAGTTTGAAAATTCTGCATTCATATAACCTTTCGAGAAATCCTAGGTT</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACCCTCATCAAGTTTCTTATACTTTCAGCTCGTCGTCCATGTGACCTACCACTTGAGGTCGGTCAAGGCATCGAAAAGCTCGAGCGTTGGTTCTTCGACGGCGGAATTCAAATGTGTCGTCCATTTGTTTACAAGGGAATGAAAGGAAACTCGAACAACTTCCTAACCAAACAGTCGTGCCGACAAGCTTGTAAGGAAATGAACCCGTGCGGTTATGGCGATCCGTTGGTCGACACCGCTGGAGAACGCATCTTGTGTACCGGAGGACAACGAGTGGATAGTTGTCCACAGAACAGCTACTGCCACGTTGGATCAAGTGCTTTGACCACTTTGTGCTGTCCAAAGAGAAGTGAGGAAGTTAGCTATACTATACCAGTCAATAAGATATACCAAGATGTATTTTTCAGAGGATTTTCGAGCCTTTGGACATTTTTAAGGGTCTGAAGCTCGGCTGTCAAGTTTTCAAACATTTTGAATTTTTTTGTTGGGTGTAAAACATTCCAGTTTGAAAATTCTGCATTCATATAACCTTTCGAGAAATCCTAGGTTTTGGTGTTTTTTCAGAAACCGGCAAACACAGTTAAATCTGCAATATAGCGCCGTAGACTTTCTATTTTTCTGATTGGTGTTTTGAGAAGATGCGAGGTAGGAAAAGTGTGTTTTCAACTTGATCAACAGAGTACCAAAGTAAAAAAATGGTGCGAAATTTTTATATTTCACTGCTACTCTGTAATCAAATAAAAAAAACTTCACTTTGCTCTCTGCAATCAGCTCACAAGGGTTACGTTGTATTAGAGGTTGTTCTAATACAGGTGGTGTTATATCACATTTCTTACAATAGCCGAGAAAATGCAATTTTCTCAATCTAGGTTTATTTTACACGCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTCGGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGA</canonical>
            <polymorphic>GACCCTCATCAAGTTTCTTATACTTTCAGCTCGTCGTCCATGTGACCTACCACTTGAGGTCGGTCAAGGCATCGAAAAGCTCGAGCGTTGGTTCTTCGACGGCGGAATTCAAATGTGTCGTCCATTTGTTTACAAGGGAATGAAAGGAAACTCGAACAACTTCCTAACCAAACAGTCGTGCCGACAAGCTTGTAAGGAAATGAACCCGTGCGGTTATGGCGATCCGTTGGTCGACACCGCTGGAGAACGCATCTTGTGTACCGGAGGACAACGAGTGGATAGTTGTCCACAGAACAGCTACTGCCACGTTGGATCAAGTGCTTTGACCACTTTGTGCTGTCCAAAGAGAAGTGAGGAAGTTAGCTATACTATACCAGTCAATAAGATATACCAAGATGTATTTTTCAGAGGATTTTCGAGCCTTTGGACATTTTTAAGGGTCTGAAGCTCGGCTGTCAAGTTTTCAAACATTTTGAATTTTTTTGTTGGGTGTAAAACAKTCCAGTTTGAAAATTCTGCATTCATATAACCTTTCGAGAAATCCTAGGTTTTGGTGTTTTTTCAGAAACCGGCAAACACAGTTAAATCTGCAATATAGCGCCGTAGACTTTCTATTTTTCTGATTGGTGTTTTGAGAAGATGCGAGGTAGGAAAAGTGTGTTTTCAACTTGATCAACAGAGTACCAAAGTAAAAAAATGGTGCGAAATTTTTATATTTCACTGCTACTCTGTAATCAAATAAAAAAAACTTCACTTTGCTCTCTGCAATCAGCTCACAAGGGTTACGTTGTATTAGAGGTTGTTCTAATACAGGTGGTGTTATATCACATTTCTTACAATAGCCGAGAAAATGCAATTTTCTCAATCTAGGTTTATTTTACACGCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTCGGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAAGAGAAGTGAGGAAGTTA</pcr_primer_p1>
		<pcr_primer_p2>CTTCAGAACCAGTTCCCTCT</pcr_primer_p2>
		<pcr_amplicon_size>736</pcr_amplicon_size>
		<canonical_amplicon>CCAAAGAGAAGTGAGGAAGTTAGCTATACTATACCAGTCAATAAGATATACCAAGATGTATTTTTCAGAGGATTTTCGAGCCTTTGGACATTTTTAAGGGTCTGAAGCTCGGCTGTCAAGTTTTCAAACATTTTGAATTTTTTTGTTGGGTGTAAAACATTCCAGTTTGAAAATTCTGC</canonical_amplicon>
		<polymorphic_amplicon>CCAAAGAGAAGTGAGGAAGTTAGCTATACTATACCAGTCAATAAGATATACCAAGATGTATTTTTCAGAGGATTTTCGAGCCTTTGGACATTTTTAAGGGTCTGAAGCTCGGCTGTCAAGTTTTCAAACATTTTGAATTTTTTTGTTGGGTGTAAAACAKTCCAGTTTGAAAATTCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31031</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>313251</contig_pos>
        <strand></strand>
        <context>aacaktccag[T/G]ttgaaaattc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TCAAGTTTTCAAACATTTTGAATTTTTTTGTTGGGTGTAAAACATTCCAG</left_flank>
        <right_flank>TTGAAAATTCTGCATTCATATAACCTTTCGAGAAATCCTAGGTTTTGGTG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCAAGTTTCTTATACTTTCAGCTCGTCGTCCATGTGACCTACCACTTGAGGTCGGTCAAGGCATCGAAAAGCTCGAGCGTTGGTTCTTCGACGGCGGAATTCAAATGTGTCGTCCATTTGTTTACAAGGGAATGAAAGGAAACTCGAACAACTTCCTAACCAAACAGTCGTGCCGACAAGCTTGTAAGGAAATGAACCCGTGCGGTTATGGCGATCCGTTGGTCGACACCGCTGGAGAACGCATCTTGTGTACCGGAGGACAACGAGTGGATAGTTGTCCACAGAACAGCTACTGCCACGTTGGATCAAGTGCTTTGACCACTTTGTGCTGTCCAAAGAGAAGTGAGGAAGTTAGCTATACTATACCAGTCAATAAGATATACCAAGATGTATTTTTCAGAGGATTTTCGAGCCTTTGGACATTTTTAAGGGTCTGAAGCTCGGCTGTCAAGTTTTCAAACATTTTGAATTTTTTTGTTGGGTGTAAAACATTCCAGTTTGAAAATTCTGCATTCATATAACCTTTCGAGAAATCCTAGGTTTTGGTGTTTTTTCAGAAACCGGCAAACACAGTTAAATCTGCAATATAGCGCCGTAGACTTTCTATTTTTCTGATTGGTGTTTTGAGAAGATGCGAGGTAGGAAAAGTGTGTTTTCAACTTGATCAACAGAGTACCAAAGTAAAAAAATGGTGCGAAATTTTTATATTTCACTGCTACTCTGTAATCAAATAAAAAAAACTTCACTTTGCTCTCTGCAATCAGCTCACAAGGGTTACGTTGTATTAGAGGTTGTTCTAATACAGGTGGTGTTATATCACATTTCTTACAATAGCCGAGAAAATGCAATTTTCTCAATCTAGGTTTATTTTACACGCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTCGGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATAT</canonical>
            <polymorphic>CATCAAGTTTCTTATACTTTCAGCTCGTCGTCCATGTGACCTACCACTTGAGGTCGGTCAAGGCATCGAAAAGCTCGAGCGTTGGTTCTTCGACGGCGGAATTCAAATGTGTCGTCCATTTGTTTACAAGGGAATGAAAGGAAACTCGAACAACTTCCTAACCAAACAGTCGTGCCGACAAGCTTGTAAGGAAATGAACCCGTGCGGTTATGGCGATCCGTTGGTCGACACCGCTGGAGAACGCATCTTGTGTACCGGAGGACAACGAGTGGATAGTTGTCCACAGAACAGCTACTGCCACGTTGGATCAAGTGCTTTGACCACTTTGTGCTGTCCAAAGAGAAGTGAGGAAGTTAGCTATACTATACCAGTCAATAAGATATACCAAGATGTATTTTTCAGAGGATTTTCGAGCCTTTGGACATTTTTAAGGGTCTGAAGCTCGGCTGTCAAGTTTTCAAACATTTTGAATTTTTTTGTTGGGTGTAAAACATTCCAGKTTGAAAATTCTGCATTCATATAACCTTTCGAGAAATCCTAGGTTTTGGTGTTTTTTCAGAAACCGGCAAACACAGTTAAATCTGCAATATAGCGCCGTAGACTTTCTATTTTTCTGATTGGTGTTTTGAGAAGATGCGAGGTAGGAAAAGTGTGTTTTCAACTTGATCAACAGAGTACCAAAGTAAAAAAATGGTGCGAAATTTTTATATTTCACTGCTACTCTGTAATCAAATAAAAAAAACTTCACTTTGCTCTCTGCAATCAGCTCACAAGGGTTACGTTGTATTAGAGGTTGTTCTAATACAGGTGGTGTTATATCACATTTCTTACAATAGCCGAGAAAATGCAATTTTCTCAATCTAGGTTTATTTTACACGCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTCGGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAAGAGAAGTGAGGAAGTTA</pcr_primer_p1>
		<pcr_primer_p2>CTTCAGAACCAGTTCCCTCT</pcr_primer_p2>
		<pcr_amplicon_size>736</pcr_amplicon_size>
		<canonical_amplicon>CCAAAGAGAAGTGAGGAAGTTAGCTATACTATACCAGTCAATAAGATATACCAAGATGTATTTTTCAGAGGATTTTCGAGCCTTTGGACATTTTTAAGGGTCTGAAGCTCGGCTGTCAAGTTTTCAAACATTTTGAATTTTTTTGTTGGGTGTAAAACATTCCAGTTTGAAAATTCTGCATTCAT</canonical_amplicon>
		<polymorphic_amplicon>CCAAAGAGAAGTGAGGAAGTTAGCTATACTATACCAGTCAATAAGATATACCAAGATGTATTTTTCAGAGGATTTTCGAGCCTTTGGACATTTTTAAGGGTCTGAAGCTCGGCTGTCAAGTTTTCAAACATTTTGAATTTTTTTGTTGGGTGTAAAACATTCCAGKTTGAAAATTCTGCATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31032</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>313276</contig_pos>
        <strand></strand>
        <context>ttcatataac[C/T]tttcgagaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGTTGGGTGTAAAACATTCCAGTTTGAAAATTCTGCATTCATATAAC</left_flank>
        <right_flank>TTTCGAGAAATCCTAGGTTTTGGTGTTTTTTCAGAAACCGGCAAACACAG</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTCGTCCATGTGACCTACCACTTGAGGTCGGTCAAGGCATCGAAAAGCTCGAGCGTTGGTTCTTCGACGGCGGAATTCAAATGTGTCGTCCATTTGTTTACAAGGGAATGAAAGGAAACTCGAACAACTTCCTAACCAAACAGTCGTGCCGACAAGCTTGTAAGGAAATGAACCCGTGCGGTTATGGCGATCCGTTGGTCGACACCGCTGGAGAACGCATCTTGTGTACCGGAGGACAACGAGTGGATAGTTGTCCACAGAACAGCTACTGCCACGTTGGATCAAGTGCTTTGACCACTTTGTGCTGTCCAAAGAGAAGTGAGGAAGTTAGCTATACTATACCAGTCAATAAGATATACCAAGATGTATTTTTCAGAGGATTTTCGAGCCTTTGGACATTTTTAAGGGTCTGAAGCTCGGCTGTCAAGTTTTCAAACATTTTGAATTTTTTTGTTGGGTGTAAAACATTCCAGTTTGAAAATTCTGCATTCATATAACCTTTCGAGAAATCCTAGGTTTTGGTGTTTTTTCAGAAACCGGCAAACACAGTTAAATCTGCAATATAGCGCCGTAGACTTTCTATTTTTCTGATTGGTGTTTTGAGAAGATGCGAGGTAGGAAAAGTGTGTTTTCAACTTGATCAACAGAGTACCAAAGTAAAAAAATGGTGCGAAATTTTTATATTTCACTGCTACTCTGTAATCAAATAAAAAAAACTTCACTTTGCTCTCTGCAATCAGCTCACAAGGGTTACGTTGTATTAGAGGTTGTTCTAATACAGGTGGTGTTATATCACATTTCTTACAATAGCCGAGAAAATGCAATTTTCTCAATCTAGGTTTATTTTACACGCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTCGGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAA</canonical>
            <polymorphic>CGTCGTCCATGTGACCTACCACTTGAGGTCGGTCAAGGCATCGAAAAGCTCGAGCGTTGGTTCTTCGACGGCGGAATTCAAATGTGTCGTCCATTTGTTTACAAGGGAATGAAAGGAAACTCGAACAACTTCCTAACCAAACAGTCGTGCCGACAAGCTTGTAAGGAAATGAACCCGTGCGGTTATGGCGATCCGTTGGTCGACACCGCTGGAGAACGCATCTTGTGTACCGGAGGACAACGAGTGGATAGTTGTCCACAGAACAGCTACTGCCACGTTGGATCAAGTGCTTTGACCACTTTGTGCTGTCCAAAGAGAAGTGAGGAAGTTAGCTATACTATACCAGTCAATAAGATATACCAAGATGTATTTTTCAGAGGATTTTCGAGCCTTTGGACATTTTTAAGGGTCTGAAGCTCGGCTGTCAAGTTTTCAAACATTTTGAATTTTTTTGTTGGGTGTAAAACATTCCAGTTTGAAAATTCTGCATTCATATAACYTTTCGAGAAATCCTAGGTTTTGGTGTTTTTTCAGAAACCGGCAAACACAGTTAAATCTGCAATATAGCGCCGTAGACTTTCTATTTTTCTGATTGGTGTTTTGAGAAGATGCGAGGTAGGAAAAGTGTGTTTTCAACTTGATCAACAGAGTACCAAAGTAAAAAAATGGTGCGAAATTTTTATATTTCACTGCTACTCTGTAATCAAATAAAAAAAACTTCACTTTGCTCTCTGCAATCAGCTCACAAGGGTTACGTTGTATTAGAGGTTGTTCTAATACAGGTGGTGTTATATCACATTTCTTACAATAGCCGAGAAAATGCAATTTTCTCAATCTAGGTTTATTTTACACGCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTCGGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAAGAGAAGTGAGGAAGTTA</pcr_primer_p1>
		<pcr_primer_p2>CTTCAGAACCAGTTCCCTCT</pcr_primer_p2>
		<pcr_amplicon_size>736</pcr_amplicon_size>
		<canonical_amplicon>CCAAAGAGAAGTGAGGAAGTTAGCTATACTATACCAGTCAATAAGATATACCAAGATGTATTTTTCAGAGGATTTTCGAGCCTTTGGACATTTTTAAGGGTCTGAAGCTCGGCTGTCAAGTTTTCAAACATTTTGAATTTTTTTGTTGGGTGTAAAACATTCCAGTTTGAAAATTCTGCATTCATATAACCTTTCGAGAAATCCTAGGTT</canonical_amplicon>
		<polymorphic_amplicon>CCAAAGAGAAGTGAGGAAGTTAGCTATACTATACCAGTCAATAAGATATACCAAGATGTATTTTTCAGAGGATTTTCGAGCCTTTGGACATTTTTAAGGGTCTGAAGCTCGGCTGTCAAGTTTTCAAACATTTTGAATTTTTTTGTTGGGTGTAAAACATTCCAGTTTGAAAATTCTGCATTCATATAACYTTTCGAGAAATCCTAGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31033</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>313602</contig_pos>
        <strand></strand>
        <context>GAaaatgcaa[T/A]tttctcaatc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATACAGGTGGTGTTATATCACATTTCTTACAATAGCCGAGAAAATGCAA</left_flank>
        <right_flank>TTTCTCAATCTAGGTTTATTTTACACGCTCCAAAGTTTTCAAAATGATTG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTAGCTATACTATACCAGTCAATAAGATATACCAAGATGTATTTTTCAGAGGATTTTCGAGCCTTTGGACATTTTTAAGGGTCTGAAGCTCGGCTGTCAAGTTTTCAAACATTTTGAATTTTTTTGTTGGGTGTAAAACATTCCAGTTTGAAAATTCTGCATTCATATAACCTTTCGAGAAATCCTAGGTTTTGGTGTTTTTTCAGAAACCGGCAAACACAGTTAAATCTGCAATATAGCGCCGTAGACTTTCTATTTTTCTGATTGGTGTTTTGAGAAGATGCGAGGTAGGAAAAGTGTGTTTTCAACTTGATCAACAGAGTACCAAAGTAAAAAAATGGTGCGAAATTTTTATATTTCACTGCTACTCTGTAATCAAATAAAAAAAACTTCACTTTGCTCTCTGCAATCAGCTCACAAGGGTTACGTTGTATTAGAGGTTGTTCTAATACAGGTGGTGTTATATCACATTTCTTACAATAGCCGAGAAAATGCAATTTTCTCAATCTAGGTTTATTTTACACGCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTCGGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAGACTTGCCAAGATGGTTCTTCGACCGCAAACAAAACCGGTGCGCTCCATTCACCTACGGAGGAGTTGCAGGAAACGAGAACAACTTCATTAGCCAAAACACTTGTATGGAGGCGTGTCCAGAGTATAGAAACTATTGTCCACATGGAATTCCACTGATCGAAGGCTCCACAGTAACCTCCTGCGGAATTGATAAGGGATGTCCAGAAGGATTCATCTGTCATATGTCCTCAGAATTCAACGTCTCCATTTGCTGTCAGGTATGGAATAATTGCCGAAATCTG</canonical>
            <polymorphic>AGTTAGCTATACTATACCAGTCAATAAGATATACCAAGATGTATTTTTCAGAGGATTTTCGAGCCTTTGGACATTTTTAAGGGTCTGAAGCTCGGCTGTCAAGTTTTCAAACATTTTGAATTTTTTTGTTGGGTGTAAAACATTCCAGTTTGAAAATTCTGCATTCATATAACCTTTCGAGAAATCCTAGGTTTTGGTGTTTTTTCAGAAACCGGCAAACACAGTTAAATCTGCAATATAGCGCCGTAGACTTTCTATTTTTCTGATTGGTGTTTTGAGAAGATGCGAGGTAGGAAAAGTGTGTTTTCAACTTGATCAACAGAGTACCAAAGTAAAAAAATGGTGCGAAATTTTTATATTTCACTGCTACTCTGTAATCAAATAAAAAAAACTTCACTTTGCTCTCTGCAATCAGCTCACAAGGGTTACGTTGTATTAGAGGTTGTTCTAATACAGGTGGTGTTATATCACATTTCTTACAATAGCCGAGAAAATGCAAWTTTCTCAATCTAGGTTTATTTTACACGCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTCGGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAGACTTGCCAAGATGGTTCTTCGACCGCAAACAAAACCGGTGCGCTCCATTCACCTACGGAGGAGTTGCAGGAAACGAGAACAACTTCATTAGCCAAAACACTTGTATGGAGGCGTGTCCAGAGTATAGAAACTATTGTCCACATGGAATTCCACTGATCGAAGGCTCCACAGTAACCTCCTGCGGAATTGATAAGGGATGTCCAGAAGGATTCATCTGTCATATGTCCTCAGAATTCAACGTCTCCATTTGCTGTCAGGTATGGAATAATTGCCGAAATCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>207 194 149 118 93 57 47 39 36 35 15 10</canonical_bands>
                <polymorphic_bands>242 207 194 118 57 47 39 36 35 15 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAAGAGAAGTGAGGAAGTTA</pcr_primer_p1>
		<pcr_primer_p2>CTTCAGAACCAGTTCCCTCT</pcr_primer_p2>
		<pcr_amplicon_size>736</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCTCAATCTAGGTTTATTTTACACGCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTCGGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAG</canonical_amplicon>
		<polymorphic_amplicon>AWTTTCTCAATCTAGGTTTATTTTACACGCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTCGGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31034</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>313629</contig_pos>
        <strand></strand>
        <context>tattttacac[G/C]ctccaaagtt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TTACAATAGCCGAGAAAATGCAATTTTCTCAATCTAGGTTTATTTTACAC</left_flank>
        <right_flank>CTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTCGGGCTC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATATACCAAGATGTATTTTTCAGAGGATTTTCGAGCCTTTGGACATTTTTAAGGGTCTGAAGCTCGGCTGTCAAGTTTTCAAACATTTTGAATTTTTTTGTTGGGTGTAAAACATTCCAGTTTGAAAATTCTGCATTCATATAACCTTTCGAGAAATCCTAGGTTTTGGTGTTTTTTCAGAAACCGGCAAACACAGTTAAATCTGCAATATAGCGCCGTAGACTTTCTATTTTTCTGATTGGTGTTTTGAGAAGATGCGAGGTAGGAAAAGTGTGTTTTCAACTTGATCAACAGAGTACCAAAGTAAAAAAATGGTGCGAAATTTTTATATTTCACTGCTACTCTGTAATCAAATAAAAAAAACTTCACTTTGCTCTCTGCAATCAGCTCACAAGGGTTACGTTGTATTAGAGGTTGTTCTAATACAGGTGGTGTTATATCACATTTCTTACAATAGCCGAGAAAATGCAATTTTCTCAATCTAGGTTTATTTTACACGCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTCGGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAGACTTGCCAAGATGGTTCTTCGACCGCAAACAAAACCGGTGCGCTCCATTCACCTACGGAGGAGTTGCAGGAAACGAGAACAACTTCATTAGCCAAAACACTTGTATGGAGGCGTGTCCAGAGTATAGAAACTATTGTCCACATGGAATTCCACTGATCGAAGGCTCCACAGTAACCTCCTGCGGAATTGATAAGGGATGTCCAGAAGGATTCATCTGTCATATGTCCTCAGAATTCAACGTCTCCATTTGCTGTCAGGTATGGAATAATTGCCGAAATCTGACACAAATTAAGTGTATAAATTTTAGG</canonical>
            <polymorphic>GATATACCAAGATGTATTTTTCAGAGGATTTTCGAGCCTTTGGACATTTTTAAGGGTCTGAAGCTCGGCTGTCAAGTTTTCAAACATTTTGAATTTTTTTGTTGGGTGTAAAACATTCCAGTTTGAAAATTCTGCATTCATATAACCTTTCGAGAAATCCTAGGTTTTGGTGTTTTTTCAGAAACCGGCAAACACAGTTAAATCTGCAATATAGCGCCGTAGACTTTCTATTTTTCTGATTGGTGTTTTGAGAAGATGCGAGGTAGGAAAAGTGTGTTTTCAACTTGATCAACAGAGTACCAAAGTAAAAAAATGGTGCGAAATTTTTATATTTCACTGCTACTCTGTAATCAAATAAAAAAAACTTCACTTTGCTCTCTGCAATCAGCTCACAAGGGTTACGTTGTATTAGAGGTTGTTCTAATACAGGTGGTGTTATATCACATTTCTTACAATAGCCGAGAAAATGCAATTTTCTCAATCTAGGTTTATTTTACACSCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTCGGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAGACTTGCCAAGATGGTTCTTCGACCGCAAACAAAACCGGTGCGCTCCATTCACCTACGGAGGAGTTGCAGGAAACGAGAACAACTTCATTAGCCAAAACACTTGTATGGAGGCGTGTCCAGAGTATAGAAACTATTGTCCACATGGAATTCCACTGATCGAAGGCTCCACAGTAACCTCCTGCGGAATTGATAAGGGATGTCCAGAAGGATTCATCTGTCATATGTCCTCAGAATTCAACGTCTCCATTTGCTGTCAGGTATGGAATAATTGCCGAAATCTGACACAAATTAAGTGTATAAATTTTAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAAGAGAAGTGAGGAAGTTA</pcr_primer_p1>
		<pcr_primer_p2>CTTCAGAACCAGTTCCCTCT</pcr_primer_p2>
		<pcr_amplicon_size>736</pcr_amplicon_size>
		<canonical_amplicon>CGCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTCGGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAG</canonical_amplicon>
		<polymorphic_amplicon>CSCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTCGGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31035</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>313673</contig_pos>
        <strand></strand>
        <context>aacctagctt[C/T]kggctyctga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTACACGCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTT</left_flank>
        <right_flank>GGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTTTAAGGGTCTGAAGCTCGGCTGTCAAGTTTTCAAACATTTTGAATTTTTTTGTTGGGTGTAAAACATTCCAGTTTGAAAATTCTGCATTCATATAACCTTTCGAGAAATCCTAGGTTTTGGTGTTTTTTCAGAAACCGGCAAACACAGTTAAATCTGCAATATAGCGCCGTAGACTTTCTATTTTTCTGATTGGTGTTTTGAGAAGATGCGAGGTAGGAAAAGTGTGTTTTCAACTTGATCAACAGAGTACCAAAGTAAAAAAATGGTGCGAAATTTTTATATTTCACTGCTACTCTGTAATCAAATAAAAAAAACTTCACTTTGCTCTCTGCAATCAGCTCACAAGGGTTACGTTGTATTAGAGGTTGTTCTAATACAGGTGGTGTTATATCACATTTCTTACAATAGCCGAGAAAATGCAATTTTCTCAATCTAGGTTTATTTTACACGCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTCGGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAGACTTGCCAAGATGGTTCTTCGACCGCAAACAAAACCGGTGCGCTCCATTCACCTACGGAGGAGTTGCAGGAAACGAGAACAACTTCATTAGCCAAAACACTTGTATGGAGGCGTGTCCAGAGTATAGAAACTATTGTCCACATGGAATTCCACTGATCGAAGGCTCCACAGTAACCTCCTGCGGAATTGATAAGGGATGTCCAGAAGGATTCATCTGTCATATGTCCTCAGAATTCAACGTCTCCATTTGCTGTCAGGTATGGAATAATTGCCGAAATCTGACACAAATTAAGTGTATAAATTTTAGGATCCAATGGATTTCTGCCTTTCGGCTCGCGACTCGGGACCATGC</canonical>
            <polymorphic>CATTTTTAAGGGTCTGAAGCTCGGCTGTCAAGTTTTCAAACATTTTGAATTTTTTTGTTGGGTGTAAAACATTCCAGTTTGAAAATTCTGCATTCATATAACCTTTCGAGAAATCCTAGGTTTTGGTGTTTTTTCAGAAACCGGCAAACACAGTTAAATCTGCAATATAGCGCCGTAGACTTTCTATTTTTCTGATTGGTGTTTTGAGAAGATGCGAGGTAGGAAAAGTGTGTTTTCAACTTGATCAACAGAGTACCAAAGTAAAAAAATGGTGCGAAATTTTTATATTTCACTGCTACTCTGTAATCAAATAAAAAAAACTTCACTTTGCTCTCTGCAATCAGCTCACAAGGGTTACGTTGTATTAGAGGTTGTTCTAATACAGGTGGTGTTATATCACATTTCTTACAATAGCCGAGAAAATGCAATTTTCTCAATCTAGGTTTATTTTACACGCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTYGGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAGACTTGCCAAGATGGTTCTTCGACCGCAAACAAAACCGGTGCGCTCCATTCACCTACGGAGGAGTTGCAGGAAACGAGAACAACTTCATTAGCCAAAACACTTGTATGGAGGCGTGTCCAGAGTATAGAAACTATTGTCCACATGGAATTCCACTGATCGAAGGCTCCACAGTAACCTCCTGCGGAATTGATAAGGGATGTCCAGAAGGATTCATCTGTCATATGTCCTCAGAATTCAACGTCTCCATTTGCTGTCAGGTATGGAATAATTGCCGAAATCTGACACAAATTAAGTGTATAAATTTTAGGATCCAATGGATTTCTGCCTTTCGGCTCGCGACTCGGGACCATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAAGAGAAGTGAGGAAGTTA</pcr_primer_p1>
		<pcr_primer_p2>CTTCAGAACCAGTTCCCTCT</pcr_primer_p2>
		<pcr_amplicon_size>736</pcr_amplicon_size>
		<canonical_amplicon>TCGGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAG</canonical_amplicon>
		<polymorphic_amplicon>TYGGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31036</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>313674</contig_pos>
        <strand></strand>
        <context>acctagctty[G/T]ggctyctgaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TACACGCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTC</left_flank>
        <right_flank>GGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTAAGGGTCTGAAGCTCGGCTGTCAAGTTTTCAAACATTTTGAATTTTTTTGTTGGGTGTAAAACATTCCAGTTTGAAAATTCTGCATTCATATAACCTTTCGAGAAATCCTAGGTTTTGGTGTTTTTTCAGAAACCGGCAAACACAGTTAAATCTGCAATATAGCGCCGTAGACTTTCTATTTTTCTGATTGGTGTTTTGAGAAGATGCGAGGTAGGAAAAGTGTGTTTTCAACTTGATCAACAGAGTACCAAAGTAAAAAAATGGTGCGAAATTTTTATATTTCACTGCTACTCTGTAATCAAATAAAAAAAACTTCACTTTGCTCTCTGCAATCAGCTCACAAGGGTTACGTTGTATTAGAGGTTGTTCTAATACAGGTGGTGTTATATCACATTTCTTACAATAGCCGAGAAAATGCAATTTTCTCAATCTAGGTTTATTTTACACGCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTCGGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAGACTTGCCAAGATGGTTCTTCGACCGCAAACAAAACCGGTGCGCTCCATTCACCTACGGAGGAGTTGCAGGAAACGAGAACAACTTCATTAGCCAAAACACTTGTATGGAGGCGTGTCCAGAGTATAGAAACTATTGTCCACATGGAATTCCACTGATCGAAGGCTCCACAGTAACCTCCTGCGGAATTGATAAGGGATGTCCAGAAGGATTCATCTGTCATATGTCCTCAGAATTCAACGTCTCCATTTGCTGTCAGGTATGGAATAATTGCCGAAATCTGACACAAATTAAGTGTATAAATTTTAGGATCCAATGGATTTCTGCCTTTCGGCTCGCGACTCGGGACCATGCA</canonical>
            <polymorphic>ATTTTTAAGGGTCTGAAGCTCGGCTGTCAAGTTTTCAAACATTTTGAATTTTTTTGTTGGGTGTAAAACATTCCAGTTTGAAAATTCTGCATTCATATAACCTTTCGAGAAATCCTAGGTTTTGGTGTTTTTTCAGAAACCGGCAAACACAGTTAAATCTGCAATATAGCGCCGTAGACTTTCTATTTTTCTGATTGGTGTTTTGAGAAGATGCGAGGTAGGAAAAGTGTGTTTTCAACTTGATCAACAGAGTACCAAAGTAAAAAAATGGTGCGAAATTTTTATATTTCACTGCTACTCTGTAATCAAATAAAAAAAACTTCACTTTGCTCTCTGCAATCAGCTCACAAGGGTTACGTTGTATTAGAGGTTGTTCTAATACAGGTGGTGTTATATCACATTTCTTACAATAGCCGAGAAAATGCAATTTTCTCAATCTAGGTTTATTTTACACGCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTCKGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAGACTTGCCAAGATGGTTCTTCGACCGCAAACAAAACCGGTGCGCTCCATTCACCTACGGAGGAGTTGCAGGAAACGAGAACAACTTCATTAGCCAAAACACTTGTATGGAGGCGTGTCCAGAGTATAGAAACTATTGTCCACATGGAATTCCACTGATCGAAGGCTCCACAGTAACCTCCTGCGGAATTGATAAGGGATGTCCAGAAGGATTCATCTGTCATATGTCCTCAGAATTCAACGTCTCCATTTGCTGTCAGGTATGGAATAATTGCCGAAATCTGACACAAATTAAGTGTATAAATTTTAGGATCCAATGGATTTCTGCCTTTCGGCTCGCGACTCGGGACCATGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAAGAGAAGTGAGGAAGTTA</pcr_primer_p1>
		<pcr_primer_p2>CTTCAGAACCAGTTCCCTCT</pcr_primer_p2>
		<pcr_amplicon_size>736</pcr_amplicon_size>
		<canonical_amplicon>CGGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAG</canonical_amplicon>
		<polymorphic_amplicon>CKGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31037</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>313679</contig_pos>
        <strand></strand>
        <context>gcttykggct[C/T]ctgaaaacgc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTCGGGCT</left_flank>
        <right_flank>CTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAGGGTCTGAAGCTCGGCTGTCAAGTTTTCAAACATTTTGAATTTTTTTGTTGGGTGTAAAACATTCCAGTTTGAAAATTCTGCATTCATATAACCTTTCGAGAAATCCTAGGTTTTGGTGTTTTTTCAGAAACCGGCAAACACAGTTAAATCTGCAATATAGCGCCGTAGACTTTCTATTTTTCTGATTGGTGTTTTGAGAAGATGCGAGGTAGGAAAAGTGTGTTTTCAACTTGATCAACAGAGTACCAAAGTAAAAAAATGGTGCGAAATTTTTATATTTCACTGCTACTCTGTAATCAAATAAAAAAAACTTCACTTTGCTCTCTGCAATCAGCTCACAAGGGTTACGTTGTATTAGAGGTTGTTCTAATACAGGTGGTGTTATATCACATTTCTTACAATAGCCGAGAAAATGCAATTTTCTCAATCTAGGTTTATTTTACACGCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTCGGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAGACTTGCCAAGATGGTTCTTCGACCGCAAACAAAACCGGTGCGCTCCATTCACCTACGGAGGAGTTGCAGGAAACGAGAACAACTTCATTAGCCAAAACACTTGTATGGAGGCGTGTCCAGAGTATAGAAACTATTGTCCACATGGAATTCCACTGATCGAAGGCTCCACAGTAACCTCCTGCGGAATTGATAAGGGATGTCCAGAAGGATTCATCTGTCATATGTCCTCAGAATTCAACGTCTCCATTTGCTGTCAGGTATGGAATAATTGCCGAAATCTGACACAAATTAAGTGTATAAATTTTAGGATCCAATGGATTTCTGCCTTTCGGCTCGCGACTCGGGACCATGCAATAAC</canonical>
            <polymorphic>TAAGGGTCTGAAGCTCGGCTGTCAAGTTTTCAAACATTTTGAATTTTTTTGTTGGGTGTAAAACATTCCAGTTTGAAAATTCTGCATTCATATAACCTTTCGAGAAATCCTAGGTTTTGGTGTTTTTTCAGAAACCGGCAAACACAGTTAAATCTGCAATATAGCGCCGTAGACTTTCTATTTTTCTGATTGGTGTTTTGAGAAGATGCGAGGTAGGAAAAGTGTGTTTTCAACTTGATCAACAGAGTACCAAAGTAAAAAAATGGTGCGAAATTTTTATATTTCACTGCTACTCTGTAATCAAATAAAAAAAACTTCACTTTGCTCTCTGCAATCAGCTCACAAGGGTTACGTTGTATTAGAGGTTGTTCTAATACAGGTGGTGTTATATCACATTTCTTACAATAGCCGAGAAAATGCAATTTTCTCAATCTAGGTTTATTTTACACGCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTCGGGCTYCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAGACTTGCCAAGATGGTTCTTCGACCGCAAACAAAACCGGTGCGCTCCATTCACCTACGGAGGAGTTGCAGGAAACGAGAACAACTTCATTAGCCAAAACACTTGTATGGAGGCGTGTCCAGAGTATAGAAACTATTGTCCACATGGAATTCCACTGATCGAAGGCTCCACAGTAACCTCCTGCGGAATTGATAAGGGATGTCCAGAAGGATTCATCTGTCATATGTCCTCAGAATTCAACGTCTCCATTTGCTGTCAGGTATGGAATAATTGCCGAAATCTGACACAAATTAAGTGTATAAATTTTAGGATCCAATGGATTTCTGCCTTTCGGCTCGCGACTCGGGACCATGCAATAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>498 308 145 36 13</canonical_bands>
                <polymorphic_bands>806 145 36 13</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>399 259 134 101 84 16 7</canonical_bands>
                <polymorphic_bands>658 134 101 84 16 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAAGAGAAGTGAGGAAGTTA</pcr_primer_p1>
		<pcr_primer_p2>CTTCAGAACCAGTTCCCTCT</pcr_primer_p2>
		<pcr_amplicon_size>736</pcr_amplicon_size>
		<canonical_amplicon>TCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAG</canonical_amplicon>
		<polymorphic_amplicon>TYCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31038</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>313702</contig_pos>
        <strand></strand>
        <context>gaattcaact[G/A]aatttatttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAGAACATAACAACCTAGCTTCGGGCTCCTGAAAACGCCGGAATTCAACT</left_flank>
        <right_flank>AATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTTTTCAAACATTTTGAATTTTTTTGTTGGGTGTAAAACATTCCAGTTTGAAAATTCTGCATTCATATAACCTTTCGAGAAATCCTAGGTTTTGGTGTTTTTTCAGAAACCGGCAAACACAGTTAAATCTGCAATATAGCGCCGTAGACTTTCTATTTTTCTGATTGGTGTTTTGAGAAGATGCGAGGTAGGAAAAGTGTGTTTTCAACTTGATCAACAGAGTACCAAAGTAAAAAAATGGTGCGAAATTTTTATATTTCACTGCTACTCTGTAATCAAATAAAAAAAACTTCACTTTGCTCTCTGCAATCAGCTCACAAGGGTTACGTTGTATTAGAGGTTGTTCTAATACAGGTGGTGTTATATCACATTTCTTACAATAGCCGAGAAAATGCAATTTTCTCAATCTAGGTTTATTTTACACGCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTCGGGCTCCTGAAAACGCCGGAATTCAACTGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAGACTTGCCAAGATGGTTCTTCGACCGCAAACAAAACCGGTGCGCTCCATTCACCTACGGAGGAGTTGCAGGAAACGAGAACAACTTCATTAGCCAAAACACTTGTATGGAGGCGTGTCCAGAGTATAGAAACTATTGTCCACATGGAATTCCACTGATCGAAGGCTCCACAGTAACCTCCTGCGGAATTGATAAGGGATGTCCAGAAGGATTCATCTGTCATATGTCCTCAGAATTCAACGTCTCCATTTGCTGTCAGGTATGGAATAATTGCCGAAATCTGACACAAATTAAGTGTATAAATTTTAGGATCCAATGGATTTCTGCCTTTCGGCTCGCGACTCGGGACCATGCAATAACTTTGAAAAGCGATATGGTTATGA</canonical>
            <polymorphic>AAGTTTTCAAACATTTTGAATTTTTTTGTTGGGTGTAAAACATTCCAGTTTGAAAATTCTGCATTCATATAACCTTTCGAGAAATCCTAGGTTTTGGTGTTTTTTCAGAAACCGGCAAACACAGTTAAATCTGCAATATAGCGCCGTAGACTTTCTATTTTTCTGATTGGTGTTTTGAGAAGATGCGAGGTAGGAAAAGTGTGTTTTCAACTTGATCAACAGAGTACCAAAGTAAAAAAATGGTGCGAAATTTTTATATTTCACTGCTACTCTGTAATCAAATAAAAAAAACTTCACTTTGCTCTCTGCAATCAGCTCACAAGGGTTACGTTGTATTAGAGGTTGTTCTAATACAGGTGGTGTTATATCACATTTCTTACAATAGCCGAGAAAATGCAATTTTCTCAATCTAGGTTTATTTTACACGCTCCAAAGTTTTCAAAATGATTGAGAACATAACAACCTAGCTTCGGGCTCCTGAAAACGCCGGAATTCAACTRAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAGACTTGCCAAGATGGTTCTTCGACCGCAAACAAAACCGGTGCGCTCCATTCACCTACGGAGGAGTTGCAGGAAACGAGAACAACTTCATTAGCCAAAACACTTGTATGGAGGCGTGTCCAGAGTATAGAAACTATTGTCCACATGGAATTCCACTGATCGAAGGCTCCACAGTAACCTCCTGCGGAATTGATAAGGGATGTCCAGAAGGATTCATCTGTCATATGTCCTCAGAATTCAACGTCTCCATTTGCTGTCAGGTATGGAATAATTGCCGAAATCTGACACAAATTAAGTGTATAAATTTTAGGATCCAATGGATTTCTGCCTTTCGGCTCGCGACTCGGGACCATGCAATAACTTTGAAAAGCGATATGGTTATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>264 242 194 86 82 68 36 18 10</canonical_bands>
                <polymorphic_bands>274 242 194 86 82 68 36 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAAGAGAAGTGAGGAAGTTA</pcr_primer_p1>
		<pcr_primer_p2>CTTCAGAACCAGTTCCCTCT</pcr_primer_p2>
		<pcr_amplicon_size>736</pcr_amplicon_size>
		<canonical_amplicon>TGAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAG</canonical_amplicon>
		<polymorphic_amplicon>TRAATTTATTTTTGTGTATTTTATTTACCAACATATTAGCCCGGAAGATATTTTATAAAAATTGCTTTTTTAGAAATCGACCCATGCGACCAAGCAGTCGAAGAGGGAACTGGTTCTGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31039</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>315460</contig_pos>
        <strand>+</strand>
        <context>TCTGTCTGGA[G/T]TTTTAGTCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCAGATCAGGCTCTCTGCATAAACACATTTCGCTGTGATTTCTGTCTGGA</left_flank>
        <right_flank>TTTTAGTCTACGTATTTTTTTCCGTTTTTTGTTCTAGTGAAATTTCAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATCTCAAATTACCTAGAGATGCCCTTTTCCTAGTTTTTTTTCTAGCACTTTCTCCTAGAGTAATTAACCCTTCCATTAGAAATCTTTCCTTCACCACCACCCTACCGAAAAGAAAAAAAACGTTCTCGATAATTGCCGTGAAGTTTGGCCAATCGATGAGTCATTTCACTACCTCCCTCATTTTCTTCTTACTCCCCATCAAATACTAAGCAACAAAACAAATGGACAGGTAGAGCGCCCTCCTATTGATCGCTCATTGTTCTTTATTTTCGAAAAATGTTTGAGAAATGTTCTTTTTTCTCAGCAAAAAGTCATTCTCATGCATTTTTCTCATCCCACACAACGTCATATTGTTTATAAAATTGAGTGGGAGAGTTTAGTGCACTATGATAATATACACATGCCTTCGCTTCTCATAACAAATGGAGAACCAGACTGTACCAGCTTGCAGATCAGGCTCTCTGCATAAACACATTTCGCTGTGATTTCTGTCTGGATTTTTAGTCTACGTATTTTTTTCCGTTTTTTGTTCTAGTGAAATTTCAATAGTACTCAGGTTTCTGTACTAAGTGAGCCAGTTTTGTTGGAATTTTAAGCTAAAAACGATGAATTGCATATAACTTATTACTGATTAGCTTCCCATTTAATGCAAAACTTATTTTGAAACTATATTGAAGTTTCTGAGAAGCACTCAGTTAAAAAAACGAAATTTAATTTAATTTAACCCTCACATTTTCAATGTTCTTGAAAATTTTAAAAGCTGAAAATTTTTCAACAAACTAAGGTATTTCCTCTAGAAGAAGACCGTCCGATTTGAGGCAAACTTGAGTTCAATTATCTCGATTCCTGAAAAAGATAGCAAAAATTTGTCAATTAAAAATTTAAGCTTCTTGAAGGCGTCCAAAAGTCTTCCTGTTCCGATGTTACAAGAAGTTCAACTATCCCTATATATCCTACTTTGATTGTCTCCGTGATCACAATTTAGAATCCTTAGAGTA</canonical>
            <polymorphic>TCATCTCAAATTACCTAGAGATGCCCTTTTCCTAGTTTTTTTTCTAGCACTTTCTCCTAGAGTAATTAACCCTTCCATTAGAAATCTTTCCTTCACCACCACCCTACCGAAAAGAAAAAAAACGTTCTCGATAATTGCCGTGAAGTTTGGCCAATCGATGAGTCATTTCACTACCTCCCTCATTTTCTTCTTACTCCCCATCAAATACTAAGCAACAAAACAAATGGACAGGTAGAGCGCCCTCCTATTGATCGCTCATTGTTCTTTATTTTCGAAAAATGTTTGAGAAATGTTCTTTTTTCTCAGCAAAAAGTCATTCTCATGCATTTTTCTCATCCCACACAACGTCATATTGTTTATAAAATTGAGTGGGAGAGTTTAGTGCACTATGATAATATACACATGCCTTCGCTTCTCATAACAAATGGAGAACCAGACTGTACCAGCTTGCAGATCAGGCTCTCTGCATAAACACATTTCGCTGTGATTTCTGTCTGGAKTTTTAGTCTACGTATTTTTTTCCGTTTTTTGTTCTAGTGAAATTTCAATAGTACTCAGGTTTCTGTACTAAGTGAGCCAGTTTTGTTGGAATTTTAAGCTAAAAACGATGAATTGCATATAACTTATTACTGATTAGCTTCCCATTTAATGCAAAACTTATTTTGAAACTATATTGAAGTTTCTGAGAAGCACTCAGTTAAAAAAACGAAATTTAATTTAATTTAACCCTCACATTTTCAATGTTCTTGAAAATTTTAAAAGCTGAAAATTTTTCAACAAACTAAGGTATTTCCTCTAGAAGAAGACCGTCCGATTTGAGGCAAACTTGAGTTCAATTATCTCGATTCCTGAAAAAGATAGCAAAAATTTGTCAATTAAAAATTTAAGCTTCTTGAAGGCGTCCAAAAGTCTTCCTGTTCCGATGTTACAAGAAGTTCAACTATCCCTATATATCCTACTTTGATTGTCTCCGTGATCACAATTTAGAATCCTTAGAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTATAAAATTGAGTGGGAGA</pcr_primer_p1>
		<pcr_primer_p2>TTAGCTTAAAATTCCAACAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTTTATAAAATTGAGTGGGAGAGTTTAGTGCACTATGATAATATACACATGCCTTCGCTTCTCATAACAAATGGAGAACCAGACTGTACCAGCTTGCAGATCAGGCTCTCTGCATAAACACATTTCGCTGTGATTTCTGTCTGGATTTTTAGTCTACGTATTTTTTTCCGTTTTTTGTTCTAGTGAAATTTCAATAGTACTCAGGTTTCTGTACTAAGTGAGCCAGTTTTGTTGGAATTTTAAGCTAA</canonical_amplicon>
		<polymorphic_amplicon>TGTTTATAAAATTGAGTGGGAGAGTTTAGTGCACTATGATAATATACACATGCCTTCGCTTCTCATAACAAATGGAGAACCAGACTGTACCAGCTTGCAGATCAGGCTCTCTGCATAAACACATTTCGCTGTGATTTCTGTCTGGAKTTTTAGTCTACGTATTTTTTTCCGTTTTTTGTTCTAGTGAAATTTCAATAGTACTCAGGTTTCTGTACTAAGTGAGCCAGTTTTGTTGGAATTTTAAGCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31040</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>315475</contig_pos>
        <strand>+</strand>
        <context>AGTCTACGTA[C/T]TTTTTTYCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCATAAACACATTTCGCTGTGATTTCTGTCTGGATTTTTAGTCTACGTA</left_flank>
        <right_flank>TTTTTTCCGTTTTTTGTTCTAGTGAAATTTCAATAGTACTCAGGTTTCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAGATGCCCTTTTCCTAGTTTTTTTTCTAGCACTTTCTCCTAGAGTAATTAACCCTTCCATTAGAAATCTTTCCTTCACCACCACCCTACCGAAAAGAAAAAAAACGTTCTCGATAATTGCCGTGAAGTTTGGCCAATCGATGAGTCATTTCACTACCTCCCTCATTTTCTTCTTACTCCCCATCAAATACTAAGCAACAAAACAAATGGACAGGTAGAGCGCCCTCCTATTGATCGCTCATTGTTCTTTATTTTCGAAAAATGTTTGAGAAATGTTCTTTTTTCTCAGCAAAAAGTCATTCTCATGCATTTTTCTCATCCCACACAACGTCATATTGTTTATAAAATTGAGTGGGAGAGTTTAGTGCACTATGATAATATACACATGCCTTCGCTTCTCATAACAAATGGAGAACCAGACTGTACCAGCTTGCAGATCAGGCTCTCTGCATAAACACATTTCGCTGTGATTTCTGTCTGGATTTTTAGTCTACGTATTTTTTTCCGTTTTTTGTTCTAGTGAAATTTCAATAGTACTCAGGTTTCTGTACTAAGTGAGCCAGTTTTGTTGGAATTTTAAGCTAAAAACGATGAATTGCATATAACTTATTACTGATTAGCTTCCCATTTAATGCAAAACTTATTTTGAAACTATATTGAAGTTTCTGAGAAGCACTCAGTTAAAAAAACGAAATTTAATTTAATTTAACCCTCACATTTTCAATGTTCTTGAAAATTTTAAAAGCTGAAAATTTTTCAACAAACTAAGGTATTTCCTCTAGAAGAAGACCGTCCGATTTGAGGCAAACTTGAGTTCAATTATCTCGATTCCTGAAAAAGATAGCAAAAATTTGTCAATTAAAAATTTAAGCTTCTTGAAGGCGTCCAAAAGTCTTCCTGTTCCGATGTTACAAGAAGTTCAACTATCCCTATATATCCTACTTTGATTGTCTCCGTGATCACAATTTAGAATCCTTAGAGTACCGTCCACTTCTATC</canonical>
            <polymorphic>TAGAGATGCCCTTTTCCTAGTTTTTTTTCTAGCACTTTCTCCTAGAGTAATTAACCCTTCCATTAGAAATCTTTCCTTCACCACCACCCTACCGAAAAGAAAAAAAACGTTCTCGATAATTGCCGTGAAGTTTGGCCAATCGATGAGTCATTTCACTACCTCCCTCATTTTCTTCTTACTCCCCATCAAATACTAAGCAACAAAACAAATGGACAGGTAGAGCGCCCTCCTATTGATCGCTCATTGTTCTTTATTTTCGAAAAATGTTTGAGAAATGTTCTTTTTTCTCAGCAAAAAGTCATTCTCATGCATTTTTCTCATCCCACACAACGTCATATTGTTTATAAAATTGAGTGGGAGAGTTTAGTGCACTATGATAATATACACATGCCTTCGCTTCTCATAACAAATGGAGAACCAGACTGTACCAGCTTGCAGATCAGGCTCTCTGCATAAACACATTTCGCTGTGATTTCTGTCTGGATTTTTAGTCTACGTAYTTTTTTCCGTTTTTTGTTCTAGTGAAATTTCAATAGTACTCAGGTTTCTGTACTAAGTGAGCCAGTTTTGTTGGAATTTTAAGCTAAAAACGATGAATTGCATATAACTTATTACTGATTAGCTTCCCATTTAATGCAAAACTTATTTTGAAACTATATTGAAGTTTCTGAGAAGCACTCAGTTAAAAAAACGAAATTTAATTTAATTTAACCCTCACATTTTCAATGTTCTTGAAAATTTTAAAAGCTGAAAATTTTTCAACAAACTAAGGTATTTCCTCTAGAAGAAGACCGTCCGATTTGAGGCAAACTTGAGTTCAATTATCTCGATTCCTGAAAAAGATAGCAAAAATTTGTCAATTAAAAATTTAAGCTTCTTGAAGGCGTCCAAAAGTCTTCCTGTTCCGATGTTACAAGAAGTTCAACTATCCCTATATATCCTACTTTGATTGTCTCCGTGATCACAATTTAGAATCCTTAGAGTACCGTCCACTTCTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTATAAAATTGAGTGGGAGA</pcr_primer_p1>
		<pcr_primer_p2>TTAGCTTAAAATTCCAACAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTTTATAAAATTGAGTGGGAGAGTTTAGTGCACTATGATAATATACACATGCCTTCGCTTCTCATAACAAATGGAGAACCAGACTGTACCAGCTTGCAGATCAGGCTCTCTGCATAAACACATTTCGCTGTGATTTCTGTCTGGATTTTTAGTCTACGTATTTTTTTCCGTTTTTTGTTCTAGTGAAATTTCAATAGTACTCAGGTTTCTGTACTAAGTGAGCCAGTTTTGTTGGAATTTTAAGCTAA</canonical_amplicon>
		<polymorphic_amplicon>TGTTTATAAAATTGAGTGGGAGAGTTTAGTGCACTATGATAATATACACATGCCTTCGCTTCTCATAACAAATGGAGAACCAGACTGTACCAGCTTGCAGATCAGGCTCTCTGCATAAACACATTTCGCTGTGATTTCTGTCTGGATTTTTAGTCTACGTAYTTTTTTCCGTTTTTTGTTCTAGTGAAATTTCAATAGTACTCAGGTTTCTGTACTAAGTGAGCCAGTTTTGTTGGAATTTTAAGCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31041</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>321784</contig_pos>
        <strand>+</strand>
        <context>GTATGGTAGG[A/C]GAGGGCTGGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAGAAAACTTGTTTGTATGCACTAACTAGGTAAATTTATGTATGGTAGG</left_flank>
        <right_flank>GAGGGCTGGCTTGTAGGAAAATGAAAAAGGGAAAAAAGAAAGGAATGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCATAGCTTGTAGATCATGAAAATTGCCACTAGGATGTACGCTGCATCGAATATTAGTAAAATTAAAGCCTCAGTTAGCTCTGACCACAGTCGGTCCGGGATTACTGTAGACATCCGAGTGGATGTCTCCAGCATCTGAAAAAAACTAAGAATAGGAATAAAGAGAATTACGAAGTCAAATCATGGGCGGAAAACTGAGAAAACACCGGGCATTGAGAATTCAAAGATTCAGGGGTAGTTATTCTTAGCTCCAAGAACGAACCACGATTCCTGTGCCCCTCTTTGTTGTTGTCTTTAAGAAAAACAACTCGGAAGACGTCGGACTTTGTCATTCTCGAACTCCCCCTCAATTTCCTTTTCAACAAAATTCAGCTGCAATTCCCCTGTCTCACTTTGTGTTGATTTTTCCCTTCGCCCTTGGAACGGCGAAAATCACAAACAACGTCCAGAGAAAACTTGTTTGTATGCACTAACTAGGTAAATTTATGTATGGTAGGAGAGGGCTGGCTTGTAGGAAAATGAAAAAGGGAAAAAAGAAAGGAATGGAAAATTAGAAATTGATACGTTCTCAGCATTACGAACATAGCTGGGAGGCAGAACTTTTGATGTTTTGTTGAACACACAGTAGTTAGTACTTGGGAATAACATTAGAATACTTATGGATCAGTTTAAAATAAACAAAAACAGAAGGTTTCACCCTTCTTGTTTCAAAATTCCTGCTCAAAGAGCCAATAAAAAAGATTCTCATGAAAAAAGAAGAAATGAGGAAGTGAATGTTTTATTTCAGCGTAAAAAGAATATGAAAAATCTAAGATGCTCATAAAGCAATTTTTAAAAAATAGAGTCTAAAAATCCTAACTTCACGTACAATGAAGTCAATAGACTGAAAACATAATTTCAGAGTTTCGAAATGCGTTTTCGGATAGAACACGTTCTGAAAAAAATCCAATTTTTTGAAAAAATTATTTCAATAAATGCAAAGTTTTCATTCTAGGTCT</canonical>
            <polymorphic>TTCCATAGCTTGTAGATCATGAAAATTGCCACTAGGATGTACGCTGCATCGAATATTAGTAAAATTAAAGCCTCAGTTAGCTCTGACCACAGTCGGTCCGGGATTACTGTAGACATCCGAGTGGATGTCTCCAGCATCTGAAAAAAACTAAGAATAGGAATAAAGAGAATTACGAAGTCAAATCATGGGCGGAAAACTGAGAAAACACCGGGCATTGAGAATTCAAAGATTCAGGGGTAGTTATTCTTAGCTCCAAGAACGAACCACGATTCCTGTGCCCCTCTTTGTTGTTGTCTTTAAGAAAAACAACTCGGAAGACGTCGGACTTTGTCATTCTCGAACTCCCCCTCAATTTCCTTTTCAACAAAATTCAGCTGCAATTCCCCTGTCTCACTTTGTGTTGATTTTTCCCTTCGCCCTTGGAACGGCGAAAATCACAAACAACGTCCAGAGAAAACTTGTTTGTATGCACTAACTAGGTAAATTTATGTATGGTAGGMGAGGGCTGGCTTGTAGGAAAATGAAAAAGGGAAAAAAGAAAGGAATGGAAAATTAGAAATTGATACGTTCTCAGCATTACGAACATAGCTGGGAGGCAGAACTTTTGATGTTTTGTTGAACACACAGTAGTTAGTACTTGGGAATAACATTAGAATACTTATGGATCAGTTTAAAATAAACAAAAACAGAAGGTTTCACCCTTCTTGTTTCAAAATTCCTGCTCAAAGAGCCAATAAAAAAGATTCTCATGAAAAAAGAAGAAATGAGGAAGTGAATGTTTTATTTCAGCGTAAAAAGAATATGAAAAATCTAAGATGCTCATAAAGCAATTTTTAAAAAATAGAGTCTAAAAATCCTAACTTCACGTACAATGAAGTCAATAGACTGAAAACATAATTTCAGAGTTTCGAAATGCGTTTTCGGATAGAACACGTTCTGAAAAAAATCCAATTTTTTGAAAAAATTATTTCAATAAATGCAAAGTTTTCATTCTAGGTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCCCTGTCTCACTTTGT</pcr_primer_p1>
		<pcr_primer_p2>TACTGTGTGTTCAACAAAACATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCCCCTGTCTCACTTTGTGTTGATTTTTCCCTTCGCCCTTGGAACGGCGAAAATCACAAACAACGTCCAGAGAAAACTTGTTTGTATGCACTAACTAGGTAAATTTATGTATGGTAGGAGAGGGCTGGCTTGTAGGAAAATGAAAAAGGGAAAAAAGAAAGGAATGGAAAATTAGAAATTGATACGTTCTCAGCATTACGAACATAGCTGGGAGGCAGAACTTTTGATGTTTTGTTGAACACACAGTA</canonical_amplicon>
		<polymorphic_amplicon>ATTCCCCTGTCTCACTTTGTGTTGATTTTTCCCTTCGCCCTTGGAACGGCGAAAATCACAAACAACGTCCAGAGAAAACTTGTTTGTATGCACTAACTAGGTAAATTTATGTATGGTAGGMGAGGGCTGGCTTGTAGGAAAATGAAAAAGGGAAAAAAGAAAGGAATGGAAAATTAGAAATTGATACGTTCTCAGCATTACGAACATAGCTGGGAGGCAGAACTTTTGATGTTTTGTTGAACACACAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31042</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>323863</contig_pos>
        <strand>+</strand>
        <context>TAAAAGTTTT[A/T]GAAAATGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCGAATTTTCGAGATTCAGTACTTCAGAATTTCCAAACTTAAAAGTTTT</left_flank>
        <right_flank>GAAAATGAATTTTTGGGAAATTGCTAATTCAAAAATGCGAAAATTTCCAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGGCGTACCTATGTTGTTCCATTAGGCTCCGAAGGACCGCTCGTTTTGTTATTCTGTTTTTTTTCGTCAGCTAGTCAAGTCTATGAAATTACTTTTCGAAAAATTTGATAGAAGGAAGTTGGATATATAAAAGGTTGGGAAAATAGTTTCATTGTGCCGGAAATTGCTTTTTTCCCCGCACAATTGTACCATTTAACATGACACACGGGATCTAGGATCATGATGTTTTCCTATTCAAAACGTAGTTTAGTGGTGTTGAAAATTGAGTCATATAAATTGAGAATTTGGGGTATAGGAAGGGAGGGGGATAAGGATCACATGGATAGGCTTATTTAGGTGTTAGATACCAAACCCGAGCTGTTACAGAAAAAACAACTAGAGGGTTTTAACAATGTTAAGACATTAGGATAGAGTTTGAACGATTGCTTTATTTGAGTTATGAAATATTTCGAATTTTCGAGATTCAGTACTTCAGAATTTCCAAACTTAAAAGTTTTAGAAAATGAATTTTTGGGAAATTGCTAATTCAAAAATGCGAAAATTTCCAAGAAATCCAGAATTTTCAACAATTTCAAAAAAAAATCTGAGATTCGGAATTTCCTGTAATTATAAGTTTTTGAAAATGAGATATCAGAAAATTCTAAAAGTTTTGGAACTCAAGAAAAAGCGGATTTTCAAAATACCAAAAATTCAGGAATTTTGAATTCCAAAATCTCAAAACTTGAGTTTTCAAAATATTTCAATTCTCAAAATTCGAAAATAAAACTTTTTGAATTCGAAACCAATAAGTTTCCAAAAATCCGAATTTCGGAATATTCCAATATTCCAAATATTCAAAGTTGTGAAAGTCAGTATTTTGATATAGCCGAATATTCTAAACTTTTGAATATCGGAACTTTGAATTTATCCAAAAATACGATATTGAATTTTCTAAATTTTCAAAAATCGAAATTTCAGATCACACCCAACTTTTTGAATTTGGAACAAAAGTTTTTAAT</canonical>
            <polymorphic>TTGGGCGTACCTATGTTGTTCCATTAGGCTCCGAAGGACCGCTCGTTTTGTTATTCTGTTTTTTTTCGTCAGCTAGTCAAGTCTATGAAATTACTTTTCGAAAAATTTGATAGAAGGAAGTTGGATATATAAAAGGTTGGGAAAATAGTTTCATTGTGCCGGAAATTGCTTTTTTCCCCGCACAATTGTACCATTTAACATGACACACGGGATCTAGGATCATGATGTTTTCCTATTCAAAACGTAGTTTAGTGGTGTTGAAAATTGAGTCATATAAATTGAGAATTTGGGGTATAGGAAGGGAGGGGGATAAGGATCACATGGATAGGCTTATTTAGGTGTTAGATACCAAACCCGAGCTGTTACAGAAAAAACAACTAGAGGGTTTTAACAATGTTAAGACATTAGGATAGAGTTTGAACGATTGCTTTATTTGAGTTATGAAATATTTCGAATTTTCGAGATTCAGTACTTCAGAATTTCCAAACTTAAAAGTTTTWGAAAATGAATTTTTGGGAAATTGCTAATTCAAAAATGCGAAAATTTCCAAGAAATCCAGAATTTTCAACAATTTCAAAAAAAAATCTGAGATTCGGAATTTCCTGTAATTATAAGTTTTTGAAAATGAGATATCAGAAAATTCTAAAAGTTTTGGAACTCAAGAAAAAGCGGATTTTCAAAATACCAAAAATTCAGGAATTTTGAATTCCAAAATCTCAAAACTTGAGTTTTCAAAATATTTCAATTCTCAAAATTCGAAAATAAAACTTTTTGAATTCGAAACCAATAAGTTTCCAAAAATCCGAATTTCGGAATATTCCAATATTCCAAATATTCAAAGTTGTGAAAGTCAGTATTTTGATATAGCCGAATATTCTAAACTTTTGAATATCGGAACTTTGAATTTATCCAAAAATACGATATTGAATTTTCTAAATTTTCAAAAATCGAAATTTCAGATCACACCCAACTTTTTGAATTTGGAACAAAAGTTTTTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGGATAGGCTTATTTAGGTGTT</pcr_primer_p1>
		<pcr_primer_p2>GTTGAAAATTCTGGATTTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGGATAGGCTTATTTAGGTGTTAGATACCAAACCCGAGCTGTTACAGAAAAAACAACTAGAGGGTTTTAACAATGTTAAGACATTAGGATAGAGTTTGAACGATTGCTTTATTTGAGTTATGAAATATTTCGAATTTTCGAGATTCAGTACTTCAGAATTTCCAAACTTAAAAGTTTTAGAAAATGAATTTTTGGGAAATTGCTAATTCAAAAATGCGAAAATTTCCAAGAAATCCAGAATTTTCAAC</canonical_amplicon>
		<polymorphic_amplicon>ATGGATAGGCTTATTTAGGTGTTAGATACCAAACCCGAGCTGTTACAGAAAAAACAACTAGAGGGTTTTAACAATGTTAAGACATTAGGATAGAGTTTGAACGATTGCTTTATTTGAGTTATGAAATATTTCGAATTTTCGAGATTCAGTACTTCAGAATTTCCAAACTTAAAAGTTTTWGAAAATGAATTTTTGGGAAATTGCTAATTCAAAAATGCGAAAATTTCCAAGAAATCCAGAATTTTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31043</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>327897</contig_pos>
        <strand></strand>
        <context>attttgaact[C/T]gattatctcg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAATGCAAAACCTGTAATAAAGGAGCCTTTCAAATGTCAATTTTGAACT</left_flank>
        <right_flank>GATTATCTCGATTCTTGTGAAAGATATCAGAAAGCTGTCAACTGATAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTATACGGTACCGCAGACCGCTTTAATTGTAGTCATAAAACGTTCAGTTCAAGACTCTGAGAATTCGGTCATTTTGAATTTTAGTATTCTCTCGGTTCTGTTGACTCATCAAAACTGGTTTTGTCCATTTAATTAGGCCAGACAAAAGTAATGGGTACAAGAGTAATGGGCCCATTATGCGTGTAATTTCATTACTGTTTTCAGATTTTTGAAAACATCGAAATGAGTAATTTTTGATTTCTTAAATTTCCTTCAGAAAAAAGGAAGTTTCACATTTCGTGTAACATTAAAAATCCCAATTAAGATATTTTTGTTTGCTGAAGAATTTGGAATTCTTGATTTTAACAATAGTACTGTATCGGGAAAAAATGCGTAATTTCCCAGTTTTTCGAATTCTAGTATTACATTAAAACATGAGAACTTTGTGTTTATTGAATTTGCTTTTAGCTTAATGCAAAACCTGTAATAAAGGAGCCTTTCAAATGTCAATTTTGAACTCGATTATCTCGATTCTTGTGAAAGATATCAGAAAGCTGTCAACTGATAATTTGTTTATCGTGATATCACTAATATTTCATCAGGGTACACATTTTTGATATCTTTCACAGAAATCGAAATAATCGAGCTCAAGGTTCACGGTTCACAGAGGGAGTACGGTATGCCTCACGGTAAAAATTCTGAACGTTCTGAATAATAATCTTCTTAATTTCCCTAGACTCGCAAAAAAAATTCATACAGATATGAAAGTTTTTAAAACAATGCAATTCAATCCAAATAATCGAAGGTCCAAATAAATGTCGAAAAAATTGGAGTTGTAGTGAGAGCGCTGGCTTGCATAGTAGATACTCGAAAACAGATACTCGAAAAAATAAACGCTAAGAATATAGAAAAAAAGGAAAAAATAATTTAATTAGTTGCCGGACGAAAATCCATAGAGGAACGGGTTGATGAGAGTAATGAGAATTTGGAGATCTTTGAAGATGTTGGCGTTGGCGCTGA</canonical>
            <polymorphic>GGTATACGGTACCGCAGACCGCTTTAATTGTAGTCATAAAACGTTCAGTTCAAGACTCTGAGAATTCGGTCATTTTGAATTTTAGTATTCTCTCGGTTCTGTTGACTCATCAAAACTGGTTTTGTCCATTTAATTAGGCCAGACAAAAGTAATGGGTACAAGAGTAATGGGCCCATTATGCGTGTAATTTCATTACTGTTTTCAGATTTTTGAAAACATCGAAATGAGTAATTTTTGATTTCTTAAATTTCCTTCAGAAAAAAGGAAGTTTCACATTTCGTGTAACATTAAAAATCCCAATTAAGATATTTTTGTTTGCTGAAGAATTTGGAATTCTTGATTTTAACAATAGTACTGTATCGGGAAAAAATGCGTAATTTCCCAGTTTTTCGAATTCTAGTATTACATTAAAACATGAGAACTTTGTGTTTATTGAATTTGCTTTTAGCTTAATGCAAAACCTGTAATAAAGGAGCCTTTCAAATGTCAATTTTGAACTYGATTATCTCGATTCTTGTGAAAGATATCAGAAAGCTGTCAACTGATAATTTGTTTATCGTGATATCACTAATATTTCATCAGGGTACACATTTTTGATATCTTTCACAGAAATCGAAATAATCGAGCTCAAGGTTCACGGTTCACAGAGGGAGTACGGTATGCCTCACGGTAAAAATTCTGAACGTTCTGAATAATAATCTTCTTAATTTCCCTAGACTCGCAAAAAAAATTCATACAGATATGAAAGTTTTTAAAACAATGCAATTCAATCCAAATAATCGAAGGTCCAAATAAATGTCGAAAAAATTGGAGTTGTAGTGAGAGCGCTGGCTTGCATAGTAGATACTCGAAAACAGATACTCGAAAAAATAAACGCTAAGAATATAGAAAAAAAGGAAAAAATAATTTAATTAGTTGCCGGACGAAAATCCATAGAGGAACGGGTTGATGAGAGTAATGAGAATTTGGAGATCTTTGAAGATGTTGGCGTTGGCGCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>220 171 158 137 109 105 49 19 14 9 9</canonical_bands>
                <polymorphic_bands>220 171 158 137 118 105 49 19 14 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTTATTGAATTTGCTTTTAGC</pcr_primer_p1>
		<pcr_primer_p2>AATTTTTACCGTGAGGCATAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TGTTTATTGAATTTGCTTTTAGCTTAATGCAAAACCTGTAATAAAGGAGCCTTTCAAATGTCAATTTTGAACTCGATTATCTCGATTCTTGTGAAAGATATCAGAAAGCTGTCAACTGATAATTTGTTTATCGTGATATCACTAATATTTCATCAGGGTACACATTTTTGATATCTTTCACAGAAATCGAAATAATCGAGCTCAAGGTTCACGGTTCACAGAGGGAGTACGGTATGCCTCACGGTAAAAATT</canonical_amplicon>
		<polymorphic_amplicon>TGTTTATTGAATTTGCTTTTAGCTTAATGCAAAACCTGTAATAAAGGAGCCTTTCAAATGTCAATTTTGAACTYGATTATCTCGATTCTTGTGAAAGATATCAGAAAGCTGTCAACTGATAATTTGTTTATCGTGATATCACTAATATTTCATCAGGGTACACATTTTTGATATCTTTCACAGAAATCGAAATAATCGAGCTCAAGGTTCACGGTTCACAGAGGGAGTACGGTATGCCTCACGGTAAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31044</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>327931</contig_pos>
        <strand></strand>
        <context>atatcagaaa[G/A]ctgtcarctg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATGTCAATTTTGAACTCGATTATCTCGATTCTTGTGAAAGATATCAGAAA</left_flank>
        <right_flank>CTGTCAACTGATAATTTGTTTATCGTGATATCACTAATATTTCATCAGGG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATAAAACGTTCAGTTCAAGACTCTGAGAATTCGGTCATTTTGAATTTTAGTATTCTCTCGGTTCTGTTGACTCATCAAAACTGGTTTTGTCCATTTAATTAGGCCAGACAAAAGTAATGGGTACAAGAGTAATGGGCCCATTATGCGTGTAATTTCATTACTGTTTTCAGATTTTTGAAAACATCGAAATGAGTAATTTTTGATTTCTTAAATTTCCTTCAGAAAAAAGGAAGTTTCACATTTCGTGTAACATTAAAAATCCCAATTAAGATATTTTTGTTTGCTGAAGAATTTGGAATTCTTGATTTTAACAATAGTACTGTATCGGGAAAAAATGCGTAATTTCCCAGTTTTTCGAATTCTAGTATTACATTAAAACATGAGAACTTTGTGTTTATTGAATTTGCTTTTAGCTTAATGCAAAACCTGTAATAAAGGAGCCTTTCAAATGTCAATTTTGAACTCGATTATCTCGATTCTTGTGAAAGATATCAGAAAGCTGTCAACTGATAATTTGTTTATCGTGATATCACTAATATTTCATCAGGGTACACATTTTTGATATCTTTCACAGAAATCGAAATAATCGAGCTCAAGGTTCACGGTTCACAGAGGGAGTACGGTATGCCTCACGGTAAAAATTCTGAACGTTCTGAATAATAATCTTCTTAATTTCCCTAGACTCGCAAAAAAAATTCATACAGATATGAAAGTTTTTAAAACAATGCAATTCAATCCAAATAATCGAAGGTCCAAATAAATGTCGAAAAAATTGGAGTTGTAGTGAGAGCGCTGGCTTGCATAGTAGATACTCGAAAACAGATACTCGAAAAAATAAACGCTAAGAATATAGAAAAAAAGGAAAAAATAATTTAATTAGTTGCCGGACGAAAATCCATAGAGGAACGGGTTGATGAGAGTAATGAGAATTTGGAGATCTTTGAAGATGTTGGCGTTGGCGCTGAGGACTCTGAAAAATTGTTTTTGTTGGTTCGACTA</canonical>
            <polymorphic>CATAAAACGTTCAGTTCAAGACTCTGAGAATTCGGTCATTTTGAATTTTAGTATTCTCTCGGTTCTGTTGACTCATCAAAACTGGTTTTGTCCATTTAATTAGGCCAGACAAAAGTAATGGGTACAAGAGTAATGGGCCCATTATGCGTGTAATTTCATTACTGTTTTCAGATTTTTGAAAACATCGAAATGAGTAATTTTTGATTTCTTAAATTTCCTTCAGAAAAAAGGAAGTTTCACATTTCGTGTAACATTAAAAATCCCAATTAAGATATTTTTGTTTGCTGAAGAATTTGGAATTCTTGATTTTAACAATAGTACTGTATCGGGAAAAAATGCGTAATTTCCCAGTTTTTCGAATTCTAGTATTACATTAAAACATGAGAACTTTGTGTTTATTGAATTTGCTTTTAGCTTAATGCAAAACCTGTAATAAAGGAGCCTTTCAAATGTCAATTTTGAACTCGATTATCTCGATTCTTGTGAAAGATATCAGAAARCTGTCAACTGATAATTTGTTTATCGTGATATCACTAATATTTCATCAGGGTACACATTTTTGATATCTTTCACAGAAATCGAAATAATCGAGCTCAAGGTTCACGGTTCACAGAGGGAGTACGGTATGCCTCACGGTAAAAATTCTGAACGTTCTGAATAATAATCTTCTTAATTTCCCTAGACTCGCAAAAAAAATTCATACAGATATGAAAGTTTTTAAAACAATGCAATTCAATCCAAATAATCGAAGGTCCAAATAAATGTCGAAAAAATTGGAGTTGTAGTGAGAGCGCTGGCTTGCATAGTAGATACTCGAAAACAGATACTCGAAAAAATAAACGCTAAGAATATAGAAAAAAAGGAAAAAATAATTTAATTAGTTGCCGGACGAAAATCCATAGAGGAACGGGTTGATGAGAGTAATGAGAATTTGGAGATCTTTGAAGATGTTGGCGTTGGCGCTGAGGACTCTGAAAAATTGTTTTTGTTGGTTCGACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>414 408 92 86</canonical_bands>
                <polymorphic_bands>414 408 178</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>277 205 203 104 92 59 33 27</canonical_bands>
                <polymorphic_bands>277 205 203 151 104 33 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTTATTGAATTTGCTTTTAGC</pcr_primer_p1>
		<pcr_primer_p2>AATTTTTACCGTGAGGCATAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TGTTTATTGAATTTGCTTTTAGCTTAATGCAAAACCTGTAATAAAGGAGCCTTTCAAATGTCAATTTTGAACTCGATTATCTCGATTCTTGTGAAAGATATCAGAAAGCTGTCAACTGATAATTTGTTTATCGTGATATCACTAATATTTCATCAGGGTACACATTTTTGATATCTTTCACAGAAATCGAAATAATCGAGCTCAAGGTTCACGGTTCACAGAGGGAGTACGGTATGCCTCACGGTAAAAATT</canonical_amplicon>
		<polymorphic_amplicon>TGTTTATTGAATTTGCTTTTAGCTTAATGCAAAACCTGTAATAAAGGAGCCTTTCAAATGTCAATTTTGAACTCGATTATCTCGATTCTTGTGAAAGATATCAGAAARCTGTCAACTGATAATTTGTTTATCGTGATATCACTAATATTTCATCAGGGTACACATTTTTGATATCTTTCACAGAAATCGAAATAATCGAGCTCAAGGTTCACGGTTCACAGAGGGAGTACGGTATGCCTCACGGTAAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31045</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>327938</contig_pos>
        <strand></strand>
        <context>aaarctgtca[A/G]ctgataattt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGAACTCGATTATCTCGATTCTTGTGAAAGATATCAGAAAGCTGTCA</left_flank>
        <right_flank>CTGATAATTTGTTTATCGTGATATCACTAATATTTCATCAGGGTACACAT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTCAGTTCAAGACTCTGAGAATTCGGTCATTTTGAATTTTAGTATTCTCTCGGTTCTGTTGACTCATCAAAACTGGTTTTGTCCATTTAATTAGGCCAGACAAAAGTAATGGGTACAAGAGTAATGGGCCCATTATGCGTGTAATTTCATTACTGTTTTCAGATTTTTGAAAACATCGAAATGAGTAATTTTTGATTTCTTAAATTTCCTTCAGAAAAAAGGAAGTTTCACATTTCGTGTAACATTAAAAATCCCAATTAAGATATTTTTGTTTGCTGAAGAATTTGGAATTCTTGATTTTAACAATAGTACTGTATCGGGAAAAAATGCGTAATTTCCCAGTTTTTCGAATTCTAGTATTACATTAAAACATGAGAACTTTGTGTTTATTGAATTTGCTTTTAGCTTAATGCAAAACCTGTAATAAAGGAGCCTTTCAAATGTCAATTTTGAACTCGATTATCTCGATTCTTGTGAAAGATATCAGAAAGCTGTCAACTGATAATTTGTTTATCGTGATATCACTAATATTTCATCAGGGTACACATTTTTGATATCTTTCACAGAAATCGAAATAATCGAGCTCAAGGTTCACGGTTCACAGAGGGAGTACGGTATGCCTCACGGTAAAAATTCTGAACGTTCTGAATAATAATCTTCTTAATTTCCCTAGACTCGCAAAAAAAATTCATACAGATATGAAAGTTTTTAAAACAATGCAATTCAATCCAAATAATCGAAGGTCCAAATAAATGTCGAAAAAATTGGAGTTGTAGTGAGAGCGCTGGCTTGCATAGTAGATACTCGAAAACAGATACTCGAAAAAATAAACGCTAAGAATATAGAAAAAAAGGAAAAAATAATTTAATTAGTTGCCGGACGAAAATCCATAGAGGAACGGGTTGATGAGAGTAATGAGAATTTGGAGATCTTTGAAGATGTTGGCGTTGGCGCTGAGGACTCTGAAAAATTGTTTTTGTTGGTTCGACTACTTTCAG</canonical>
            <polymorphic>CGTTCAGTTCAAGACTCTGAGAATTCGGTCATTTTGAATTTTAGTATTCTCTCGGTTCTGTTGACTCATCAAAACTGGTTTTGTCCATTTAATTAGGCCAGACAAAAGTAATGGGTACAAGAGTAATGGGCCCATTATGCGTGTAATTTCATTACTGTTTTCAGATTTTTGAAAACATCGAAATGAGTAATTTTTGATTTCTTAAATTTCCTTCAGAAAAAAGGAAGTTTCACATTTCGTGTAACATTAAAAATCCCAATTAAGATATTTTTGTTTGCTGAAGAATTTGGAATTCTTGATTTTAACAATAGTACTGTATCGGGAAAAAATGCGTAATTTCCCAGTTTTTCGAATTCTAGTATTACATTAAAACATGAGAACTTTGTGTTTATTGAATTTGCTTTTAGCTTAATGCAAAACCTGTAATAAAGGAGCCTTTCAAATGTCAATTTTGAACTCGATTATCTCGATTCTTGTGAAAGATATCAGAAAGCTGTCARCTGATAATTTGTTTATCGTGATATCACTAATATTTCATCAGGGTACACATTTTTGATATCTTTCACAGAAATCGAAATAATCGAGCTCAAGGTTCACGGTTCACAGAGGGAGTACGGTATGCCTCACGGTAAAAATTCTGAACGTTCTGAATAATAATCTTCTTAATTTCCCTAGACTCGCAAAAAAAATTCATACAGATATGAAAGTTTTTAAAACAATGCAATTCAATCCAAATAATCGAAGGTCCAAATAAATGTCGAAAAAATTGGAGTTGTAGTGAGAGCGCTGGCTTGCATAGTAGATACTCGAAAACAGATACTCGAAAAAATAAACGCTAAGAATATAGAAAAAAAGGAAAAAATAATTTAATTAGTTGCCGGACGAAAATCCATAGAGGAACGGGTTGATGAGAGTAATGAGAATTTGGAGATCTTTGAAGATGTTGGCGTTGGCGCTGAGGACTCTGAAAAATTGTTTTTGTTGGTTCGACTACTTTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>502 436 62</canonical_bands>
                <polymorphic_bands>938 62</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>436 399 62 49 47 7</canonical_bands>
                <polymorphic_bands>483 399 62 49 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTTATTGAATTTGCTTTTAGC</pcr_primer_p1>
		<pcr_primer_p2>AATTTTTACCGTGAGGCATAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TGTTTATTGAATTTGCTTTTAGCTTAATGCAAAACCTGTAATAAAGGAGCCTTTCAAATGTCAATTTTGAACTCGATTATCTCGATTCTTGTGAAAGATATCAGAAAGCTGTCAACTGATAATTTGTTTATCGTGATATCACTAATATTTCATCAGGGTACACATTTTTGATATCTTTCACAGAAATCGAAATAATCGAGCTCAAGGTTCACGGTTCACAGAGGGAGTACGGTATGCCTCACGGTAAAAATT</canonical_amplicon>
		<polymorphic_amplicon>TGTTTATTGAATTTGCTTTTAGCTTAATGCAAAACCTGTAATAAAGGAGCCTTTCAAATGTCAATTTTGAACTCGATTATCTCGATTCTTGTGAAAGATATCAGAAAGCTGTCARCTGATAATTTGTTTATCGTGATATCACTAATATTTCATCAGGGTACACATTTTTGATATCTTTCACAGAAATCGAAATAATCGAGCTCAAGGTTCACGGTTCACAGAGGGAGTACGGTATGCCTCACGGTAAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31046</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>331753</contig_pos>
        <strand></strand>
        <context>ttttcaaagt[G/A]atcggaaact</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACAAAGTTTTCAATCCAGATCTATTTTACACCCTCTAGCATTTTCAAAGT</left_flank>
        <right_flank>ATCGGAAACTTGACAACCGAGCCCTGGAAAAGGCCGAAAAAAAACTGAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTAATTCAAAAAAAGGGAAAAAGAGCTTTCTGAGATTATCCCATACTTCAGAATTTCGAAATCAGGGTAAATATTGGCGGTCTTTACTCAAAACTGGGAGAGAAGAATTTTCTAAAACCTCCCAGATTAGTTTCAAGTGCTGAAAATAGTGGAAATTGCGTCCTCTGAAATTATCTTTACTAGAAATTTGAAAAGTTGAGAAATGATGGTCCACATACAGTACCATTCAATAAGGTATAGAAAGGCGCATTTTTCAGTGAATTTTCAGCCACTTTTAAGAGTCTGTCTGAAGCTCGATCCTCAGATTTACAATGACTATGAAACTTTTCAAAAGTCTAAAGCAAGCCTAGATAAAAAATGTTTTGTACCAATAACGTGGAAGAAATGGTGTCTTTCAGTATTCGGGAAAAAGCTAAAAATTTAGGAATTCTCAAAAAATTCTGTAAATACAAAGTTTTCAATCCAGATCTATTTTACACCCTCTAGCATTTTCAAAGTGATCGGAAACTTGACAACCGAGCCCTGGAAAAGGCCGAAAAAAAACTGAAAATTATGTTTTTAGATATCATATCAATCGGTACTGTATTCAGAACGTAGCTATTTGGAAAAAAAGTTCTGATTGCGCCTACGCGGGTCCCTAAGATCTAAATGAATATTGAATTGTACTTCTGAGAAATGGGTAAAGAGAAGTGCGCATTTTGTATTCTTCCTCAAAGAGTGCTCCAGCGAAAAATAGAGCATAGAAAAGGACGGCGGGAATGATGTGCAATGGTCGAGAAACGAGCCGCGCTAATTTGATTGGCAAATTTGATAGGAACCAAGAGACACATACATTTTTTTTCGAAAAGAACGAGAGAGAAAGGAAAGAAGAAGGCACCTTATATTTTTATGATGTTGTTTAGATCTGTTGAAAAATAATAAAAAATAGATATGAAAAATTTTGGTTATTTGACTCAATGACCACAATTTATCGTAGTGACTAAAAAGAAAACATCAGAA</canonical>
            <polymorphic>AGTAATTCAAAAAAAGGGAAAAAGAGCTTTCTGAGATTATCCCATACTTCAGAATTTCGAAATCAGGGTAAATATTGGCGGTCTTTACTCAAAACTGGGAGAGAAGAATTTTCTAAAACCTCCCAGATTAGTTTCAAGTGCTGAAAATAGTGGAAATTGCGTCCTCTGAAATTATCTTTACTAGAAATTTGAAAAGTTGAGAAATGATGGTCCACATACAGTACCATTCAATAAGGTATAGAAAGGCGCATTTTTCAGTGAATTTTCAGCCACTTTTAAGAGTCTGTCTGAAGCTCGATCCTCAGATTTACAATGACTATGAAACTTTTCAAAAGTCTAAAGCAAGCCTAGATAAAAAATGTTTTGTACCAATAACGTGGAAGAAATGGTGTCTTTCAGTATTCGGGAAAAAGCTAAAAATTTAGGAATTCTCAAAAAATTCTGTAAATACAAAGTTTTCAATCCAGATCTATTTTACACCCTCTAGCATTTTCAAAGTRATCGGAAACTTGACAACCGAGCCCTGGAAAAGGCCGAAAAAAAACTGAAAATTATGTTTTTAGATATCATATCAATCGGTACTGTATTCAGAACGTAGCTATTTGGAAAAAAAGTTCTGATTGCGCCTACGCGGGTCCCTAAGATCTAAATGAATATTGAATTGTACTTCTGAGAAATGGGTAAAGAGAAGTGCGCATTTTGTATTCTTCCTCAAAGAGTGCTCCAGCGAAAAATAGAGCATAGAAAAGGACGGCGGGAATGATGTGCAATGGTCGAGAAACGAGCCGCGCTAATTTGATTGGCAAATTTGATAGGAACCAAGAGACACATACATTTTTTTTCGAAAAGAACGAGAGAGAAAGGAAAGAAGAAGGCACCTTATATTTTTATGATGTTGTTTAGATCTGTTGAAAAATAATAAAAAATAGATATGAAAAATTTTGGTTATTTGACTCAATGACCACAATTTATCGTAGTGACTAAAAAGAAAACATCAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>296 260 170 143 98 33</canonical_bands>
                <polymorphic_bands>296 260 176 170 98</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>193 140 107 88 87 62 61 49 46 46 28 21 21 15 12 12 12</canonical_bands>
                <polymorphic_bands>214 140 107 88 87 62 61 49 46 46 28 21 15 12 12 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGAGAAATGATGGTCCAC</pcr_primer_p1>
		<pcr_primer_p2>TCCAAATAGCTACGTTCTGAATA</pcr_primer_p2>
		<pcr_amplicon_size>412</pcr_amplicon_size>
		<canonical_amplicon>GTTGAGAAATGATGGTCCACATACAGTACCATTCAATAAGGTATAGAAAGGCGCATTTTTCAGTGAATTTTCAGCCACTTTTAAGAGTCTGTCTGAAGCTCGATCCTCAGATTTACAATGACTATGAAACTTTTCAAAAGTCTAAAGCAAGCCTAGATAAAAAATGTTTTGTACCAATAACGTGGAAGAAATGGTGTCTTTCAGTATTCGGGAAAAAGCTAAAAATTTAGGAATTCTCAAAAAATTCTGTAAATACAAAGTTTTCAATCCAGATCTATTTTACACCCTCTAGCATTTTCAAAGTGATCGGAAACTTGACAACCGAGCCCTGGAAAAGGCCGAAAAAAAACTGAAAATTATGTTTTTAGATATCATATCAATCGGTACTGTATTCAGAACGTAGCTATTTGGA</canonical_amplicon>
		<polymorphic_amplicon>GTTGAGAAATGATGGTCCACATACAGTACCATTCAATAAGGTATAGAAAGGCGCATTTTTCAGTGAATTTTCAGCCACTTTTAAGAGTCTGTCTGAAGCTCGATCCTCAGATTTACAATGACTATGAAACTTTTCAAAAGTCTAAAGCAAGCCTAGATAAAAAATGTTTTGTACCAATAACGTGGAAGAAATGGTGTCTTTCAGTATTCGGGAAAAAGCTAAAAATTTAGGAATTCTCAAAAAATTCTGTAAATACAAAGTTTTCAATCCAGATCTATTTTACACCCTCTAGCATTTTCAAAGTRATCGGAAACTTGACAACCGAGCCCTGGAAAAGGCCGAAAAAAAACTGAAAATTATGTTTTTAGATATCATATCAATCGGTACTGTATTCAGAACGTAGCTATTTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31047</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>332088</contig_pos>
        <strand>+</strand>
        <context>GACACATACA[C/T]TTTTTTTCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCGCGCTAATTTGATTGGCAAATTTGATAGGAACCAAGAGACACATACA</left_flank>
        <right_flank>TTTTTTTCGAAAAGAACGAGAGAGAAAGGAAAGAAGAAGGCACCTTATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAAAGCAAGCCTAGATAAAAAATGTTTTGTACCAATAACGTGGAAGAAATGGTGTCTTTCAGTATTCGGGAAAAAGCTAAAAATTTAGGAATTCTCAAAAAATTCTGTAAATACAAAGTTTTCAATCCAGATCTATTTTACACCCTCTAGCATTTTCAAAGTGATCGGAAACTTGACAACCGAGCCCTGGAAAAGGCCGAAAAAAAACTGAAAATTATGTTTTTAGATATCATATCAATCGGTACTGTATTCAGAACGTAGCTATTTGGAAAAAAAGTTCTGATTGCGCCTACGCGGGTCCCTAAGATCTAAATGAATATTGAATTGTACTTCTGAGAAATGGGTAAAGAGAAGTGCGCATTTTGTATTCTTCCTCAAAGAGTGCTCCAGCGAAAAATAGAGCATAGAAAAGGACGGCGGGAATGATGTGCAATGGTCGAGAAACGAGCCGCGCTAATTTGATTGGCAAATTTGATAGGAACCAAGAGACACATACATTTTTTTTCGAAAAGAACGAGAGAGAAAGGAAAGAAGAAGGCACCTTATATTTTTATGATGTTGTTTAGATCTGTTGAAAAATAATAAAAAATAGATATGAAAAATTTTGGTTATTTGACTCAATGACCACAATTTATCGTAGTGACTAAAAAGAAAACATCAGAAATGGTTGTGTGCTGGTGTTAGCCGGATGGTTCAACAAGCCACCGGAAAACAAAAGAGTGCTTCAGATTAAAGAGCATCAGTTAATTTTTTTTCTAACTGGATTTAAAGGAAGTATGATTTTCAGGATTCGTCACTTGGCCATTCTTCCCAGGGTGGTCTGTTTTTAAGCTTCCTTTTGGCTTTCCGCCCTCTCATCCTATTTCATCTCATCAAGAAATCCGTTCAGCAGTCTAATATATTGGTATAATGAAAAAAGAAGAGGAAGAAGGAAATAAAACGCGTCGAAAAAAGAAAGATCAAGAATCTAAGGTGTTTTGTCTAAGCCTGGGAGCCTC</canonical>
            <polymorphic>TCTAAAGCAAGCCTAGATAAAAAATGTTTTGTACCAATAACGTGGAAGAAATGGTGTCTTTCAGTATTCGGGAAAAAGCTAAAAATTTAGGAATTCTCAAAAAATTCTGTAAATACAAAGTTTTCAATCCAGATCTATTTTACACCCTCTAGCATTTTCAAAGTGATCGGAAACTTGACAACCGAGCCCTGGAAAAGGCCGAAAAAAAACTGAAAATTATGTTTTTAGATATCATATCAATCGGTACTGTATTCAGAACGTAGCTATTTGGAAAAAAAGTTCTGATTGCGCCTACGCGGGTCCCTAAGATCTAAATGAATATTGAATTGTACTTCTGAGAAATGGGTAAAGAGAAGTGCGCATTTTGTATTCTTCCTCAAAGAGTGCTCCAGCGAAAAATAGAGCATAGAAAAGGACGGCGGGAATGATGTGCAATGGTCGAGAAACGAGCCGCGCTAATTTGATTGGCAAATTTGATAGGAACCAAGAGACACATACAYTTTTTTTCGAAAAGAACGAGAGAGAAAGGAAAGAAGAAGGCACCTTATATTTTTATGATGTTGTTTAGATCTGTTGAAAAATAATAAAAAATAGATATGAAAAATTTTGGTTATTTGACTCAATGACCACAATTTATCGTAGTGACTAAAAAGAAAACATCAGAAATGGTTGTGTGCTGGTGTTAGCCGGATGGTTCAACAAGCCACCGGAAAACAAAAGAGTGCTTCAGATTAAAGAGCATCAGTTAATTTTTTTTCTAACTGGATTTAAAGGAAGTATGATTTTCAGGATTCGTCACTTGGCCATTCTTCCCAGGGTGGTCTGTTTTTAAGCTTCCTTTTGGCTTTCCGCCCTCTCATCCTATTTCATCTCATCAAGAAATCCGTTCAGCAGTCTAATATATTGGTATAATGAAAAAAGAAGAGGAAGAAGGAAATAAAACGCGTCGAAAAAAGAAAGATCAAGAATCTAAGGTGTTTTGTCTAAGCCTGGGAGCCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTTCTGAGAAATGGGTAAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTCAACAGATCTAAACAACATCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TACTTCTGAGAAATGGGTAAAGAGAAGTGCGCATTTTGTATTCTTCCTCAAAGAGTGCTCCAGCGAAAAATAGAGCATAGAAAAGGACGGCGGGAATGATGTGCAATGGTCGAGAAACGAGCCGCGCTAATTTGATTGGCAAATTTGATAGGAACCAAGAGACACATACATTTTTTTTCGAAAAGAACGAGAGAGAAAGGAAAGAAGAAGGCACCTTATATTTTTATGATGTTGTTTAGATCTGTTGAA</canonical_amplicon>
		<polymorphic_amplicon>TACTTCTGAGAAATGGGTAAAGAGAAGTGCGCATTTTGTATTCTTCCTCAAAGAGTGCTCCAGCGAAAAATAGAGCATAGAAAAGGACGGCGGGAATGATGTGCAATGGTCGAGAAACGAGCCGCGCTAATTTGATTGGCAAATTTGATAGGAACCAAGAGACACATACAYTTTTTTTCGAAAAGAACGAGAGAGAAAGGAAAGAAGAAGGCACCTTATATTTTTATGATGTTGTTTAGATCTGTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31048</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>376274</contig_pos>
        <strand>+</strand>
        <context>CACTTCCTCG[A/G]AAACAAATTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCG</left_flank>
        <right_flank>AAACAAATTCAACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGGGTTCAACTAGGGGTTCCCTAATAACATCAGCAAAATTCCGCGCAATTCCAAATTTTTTCAGAAAAGTTCTGTGTAGGGATGAGTTTACATCCGAAGAGTAATTTCAAAATTACTACTTTCGATTCATCCCATCGACCACTGAGAATGCAACAAGTAATTATTCGGTCTAGGTTCTTTAATCTTCAACAAAAAAGTTAAACAGTTACCTTCATTTTCACTTTCCGTTCTTCTCATGGCCCCGCCTAACAAAGTCTCTATTTATGCTTCATTGTTTCTTGGTAATTTTTGTAAAGGGTCATCAATAGGCATGCATCTTTTTTTTTCATTTTTTTTTCTCCTCATATGTCAATCATCAATTTTTCAAATGGCTATCCGTTGGTTCTTCTTCTTCTTCTTTTTTTTTTTTTGGCAGAGAAAATTCGAGAGGATAGGGAATGTGTCTTCGTCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGGAAACAAATTCAACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTGGTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCATCGTCCGTGTGTAGATTGGCTTTAGATTGGTACGTTCTGTACCCATAAGAACTGATATTTTCACGAATATGGCGTGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCGAAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGATTCGACGTGTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGTCGTGTCGACTC</canonical>
            <polymorphic>AGGGGTTCAACTAGGGGTTCCCTAATAACATCAGCAAAATTCCGCGCAATTCCAAATTTTTTCAGAAAAGTTCTGTGTAGGGATGAGTTTACATCCGAAGAGTAATTTCAAAATTACTACTTTCGATTCATCCCATCGACCACTGAGAATGCAACAAGTAATTATTCGGTCTAGGTTCTTTAATCTTCAACAAAAAAGTTAAACAGTTACCTTCATTTTCACTTTCCGTTCTTCTCATGGCCCCGCCTAACAAAGTCTCTATTTATGCTTCATTGTTTCTTGGTAATTTTTGTAAAGGGTCATCAATAGGCATGCATCTTTTTTTTTCATTTTTTTTTCTCCTCATATGTCAATCATCAATTTTTCAAATGGCTATCCGTTGGTTCTTCTTCTTCTTCTTTTTTTTTTTTTGGCAGAGAAAATTCGAGAGGATAGGGAATGTGTCTTCGTCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGRAAACAAATTCAACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTGGTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCATCGTCCGTGTGTAGATTGGCTTTAGATTGGTACGTTCTGTACCCATAAGAACTGATATTTTCACGAATATGGCGTGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCGAAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGATTCGACGTGTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGTCGTGTCGACTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>403 186 154 101 64 60 32</canonical_bands>
                <polymorphic_bands>557 186 101 64 60 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAGAAAATTCGAGAGGATAG</pcr_primer_p1>
		<pcr_primer_p2>TGTTCTTTTCTGACTGTGATCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGAGAAAATTCGAGAGGATAGGGAATGTGTCTTCGTCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGGAAACAAATTCAACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACA</canonical_amplicon>
		<polymorphic_amplicon>CAGAGAAAATTCGAGAGGATAGGGAATGTGTCTTCGTCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGRAAACAAATTCAACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31049</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>376358</contig_pos>
        <strand>+</strand>
        <context>TTATATTTCC[A/G]TTTTTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCC</left_flank>
        <right_flank>TTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTTTACATCCGAAGAGTAATTTCAAAATTACTACTTTCGATTCATCCCATCGACCACTGAGAATGCAACAAGTAATTATTCGGTCTAGGTTCTTTAATCTTCAACAAAAAAGTTAAACAGTTACCTTCATTTTCACTTTCCGTTCTTCTCATGGCCCCGCCTAACAAAGTCTCTATTTATGCTTCATTGTTTCTTGGTAATTTTTGTAAAGGGTCATCAATAGGCATGCATCTTTTTTTTTCATTTTTTTTTCTCCTCATATGTCAATCATCAATTTTTCAAATGGCTATCCGTTGGTTCTTCTTCTTCTTCTTTTTTTTTTTTTGGCAGAGAAAATTCGAGAGGATAGGGAATGTGTCTTCGTCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGGAAACAAATTCAACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTGGTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCATCGTCCGTGTGTAGATTGGCTTTAGATTGGTACGTTCTGTACCCATAAGAACTGATATTTTCACGAATATGGCGTGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCGAAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGATTCGACGTGTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGTCGTGTCGACTCGTATAGACTCACGTCGATTTGTGTCGACACTGTATCGACTCGTGTCGTGTCGATACGAATCGACACGACACGTGATTCCAAACG</canonical>
            <polymorphic>GAGTTTACATCCGAAGAGTAATTTCAAAATTACTACTTTCGATTCATCCCATCGACCACTGAGAATGCAACAAGTAATTATTCGGTCTAGGTTCTTTAATCTTCAACAAAAAAGTTAAACAGTTACCTTCATTTTCACTTTCCGTTCTTCTCATGGCCCCGCCTAACAAAGTCTCTATTTATGCTTCATTGTTTCTTGGTAATTTTTGTAAAGGGTCATCAATAGGCATGCATCTTTTTTTTTCATTTTTTTTTCTCCTCATATGTCAATCATCAATTTTTCAAATGGCTATCCGTTGGTTCTTCTTCTTCTTCTTTTTTTTTTTTTGGCAGAGAAAATTCGAGAGGATAGGGAATGTGTCTTCGTCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGGAAACAAATTCAACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCRTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTGGTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCATCGTCCGTGTGTAGATTGGCTTTAGATTGGTACGTTCTGTACCCATAAGAACTGATATTTTCACGAATATGGCGTGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCGAAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGATTCGACGTGTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGTCGTGTCGACTCGTATAGACTCACGTCGATTTGTGTCGACACTGTATCGACTCGTGTCGTGTCGATACGAATCGACACGACACGTGATTCCAAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAGAAAATTCGAGAGGATAG</pcr_primer_p1>
		<pcr_primer_p2>TGTTCTTTTCTGACTGTGATCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGAGAAAATTCGAGAGGATAGGGAATGTGTCTTCGTCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGGAAACAAATTCAACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACA</canonical_amplicon>
		<polymorphic_amplicon>CAGAGAAAATTCGAGAGGATAGGGAATGTGTCTTCGTCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGGAAACAAATTCAACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCRTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31050</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>376664</contig_pos>
        <strand></strand>
        <context>gacacaagcg[A/G]aaaccatctg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCG</left_flank>
        <right_flank>AAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGATTCGACGTGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCTTCTTTTTTTTTTTTTGGCAGAGAAAATTCGAGAGGATAGGGAATGTGTCTTCGTCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGGAAACAAATTCAACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTGGTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCATCGTCCGTGTGTAGATTGGCTTTAGATTGGTACGTTCTGTACCCATAAGAACTGATATTTTCACGAATATGGCGTGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCGAAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGATTCGACGTGTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGTCGTGTCGACTCGTATAGACTCACGTCGATTTGTGTCGACACTGTATCGACTCGTGTCGTGTCGATACGAATCGACACGACACGTGATTCCAAACGCCCTCTTTTGAACGGTAATTTTTGGAGGGAGTTCAATTTTTTTTGAATTCTTTGAAGTTTCGCATTGTTTATCGTCATGATGGCCTATCTTTTGACTGAAGAATTTTCTAGGCCACTATGCTGAAATGGCCTAGAGAACGTACCAGTCAAATATTATACCGTTTCTGAGCCAATGATACATGGTGGCCTAACTTTTTCATTCTAGGCCATCGCATAAAAATCACCCTGAAAACATACCAGGTGGATATCTGACTAATTCTAGGCCGAAAAAGTTTGTGGCCTAGAAAACTCAATTTGCGAAAGTTA</canonical>
            <polymorphic>TCTTCTTCTTTTTTTTTTTTTGGCAGAGAAAATTCGAGAGGATAGGGAATGTGTCTTCGTCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGGAAACAAATTCAACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTGGTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCATCGTCCGTGTGTAGATTGGCTTTAGATTGGTACGTTCTGTACCCATAAGAACTGATATTTTCACGAATATGGCGTGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCGRAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGATTCGACGTGTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGTCGTGTCGACTCGTATAGACTCACGTCGATTTGTGTCGACACTGTATCGACTCGTGTCGTGTCGATACGAATCGACACGACACGTGATTCCAAACGCCCTCTTTTGAACGGTAATTTTTGGAGGGAGTTCAATTTTTTTTGAATTCTTTGAAGTTTCGCATTGTTTATCGTCATGATGGCCTATCTTTTGACTGAAGAATTTTCTAGGCCACTATGCTGAAATGGCCTAGAGAACGTACCAGTCAAATATTATACCGTTTCTGAGCCAATGATACATGGTGGCCTAACTTTTTCATTCTAGGCCATCGCATAAAAATCACCCTGAAAACATACCAGGTGGATATCTGACTAATTCTAGGCCGAAAAAGTTTGTGGCCTAGAAAACTCAATTTGCGAAAGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGATAAGGCTTCAAAATAAGA</pcr_primer_p1>
		<pcr_primer_p2>AAAATTACCGTTCAAAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>292</pcr_amplicon_size>
		<canonical_amplicon>TGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCGAAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGATTCGACGTGTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGTCGTGTCGACTCGTATAGACTCACGTCGATTTGTGTCGACACTGTATCGACTCGTGTCGTGTCGATACGAATCGACACGACACGTGATTCCAAACGCCCTCTTTTGAACGGTAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCGRAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGATTCGACGTGTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGTCGTGTCGACTCGTATAGACTCACGTCGATTTGTGTCGACACTGTATCGACTCGTGTCGTGTCGATACGAATCGACACGACACGTGATTCCAAACGCCCTCTTTTGAACGGTAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31051</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>376705</contig_pos>
        <strand></strand>
        <context>tcgacacaga[T/G]tcgacgtrta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ACACAAGCGAAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGA</left_flank>
        <right_flank>TCGACGTGTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGAC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGGGAATGTGTCTTCGTCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGGAAACAAATTCAACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTGGTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCATCGTCCGTGTGTAGATTGGCTTTAGATTGGTACGTTCTGTACCCATAAGAACTGATATTTTCACGAATATGGCGTGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCGAAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGATTCGACGTGTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGTCGTGTCGACTCGTATAGACTCACGTCGATTTGTGTCGACACTGTATCGACTCGTGTCGTGTCGATACGAATCGACACGACACGTGATTCCAAACGCCCTCTTTTGAACGGTAATTTTTGGAGGGAGTTCAATTTTTTTTGAATTCTTTGAAGTTTCGCATTGTTTATCGTCATGATGGCCTATCTTTTGACTGAAGAATTTTCTAGGCCACTATGCTGAAATGGCCTAGAGAACGTACCAGTCAAATATTATACCGTTTCTGAGCCAATGATACATGGTGGCCTAACTTTTTCATTCTAGGCCATCGCATAAAAATCACCCTGAAAACATACCAGGTGGATATCTGACTAATTCTAGGCCGAAAAAGTTTGTGGCCTAGAAAACTCAATTTGCGAAAGTTAGGCCACGTTGAGTACTTTAATATTTAAAAGAAGAAATTTAA</canonical>
            <polymorphic>ATAGGGAATGTGTCTTCGTCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGGAAACAAATTCAACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTGGTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCATCGTCCGTGTGTAGATTGGCTTTAGATTGGTACGTTCTGTACCCATAAGAACTGATATTTTCACGAATATGGCGTGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCGAAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGAKTCGACGTGTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGTCGTGTCGACTCGTATAGACTCACGTCGATTTGTGTCGACACTGTATCGACTCGTGTCGTGTCGATACGAATCGACACGACACGTGATTCCAAACGCCCTCTTTTGAACGGTAATTTTTGGAGGGAGTTCAATTTTTTTTGAATTCTTTGAAGTTTCGCATTGTTTATCGTCATGATGGCCTATCTTTTGACTGAAGAATTTTCTAGGCCACTATGCTGAAATGGCCTAGAGAACGTACCAGTCAAATATTATACCGTTTCTGAGCCAATGATACATGGTGGCCTAACTTTTTCATTCTAGGCCATCGCATAAAAATCACCCTGAAAACATACCAGGTGGATATCTGACTAATTCTAGGCCGAAAAAGTTTGTGGCCTAGAAAACTCAATTTGCGAAAGTTAGGCCACGTTGAGTACTTTAATATTTAAAAGAAGAAATTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>498 357 128 17</canonical_bands>
                <polymorphic_bands>626 357 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGATAAGGCTTCAAAATAAGA</pcr_primer_p1>
		<pcr_primer_p2>AAAATTACCGTTCAAAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>292</pcr_amplicon_size>
		<canonical_amplicon>TGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCGAAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGATTCGACGTGTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGTCGTGTCGACTCGTATAGACTCACGTCGATTTGTGTCGACACTGTATCGACTCGTGTCGTGTCGATACGAATCGACACGACACGTGATTCCAAACGCCCTCTTTTGAACGGTAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCGAAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGAKTCGACGTGTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGTCGTGTCGACTCGTATAGACTCACGTCGATTTGTGTCGACACTGTATCGACTCGTGTCGTGTCGATACGAATCGACACGACACGTGATTCCAAACGCCCTCTTTTGAACGGTAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31052</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>376713</contig_pos>
        <strand></strand>
        <context>gaktcgacgt[G/A]tatcgactcg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGATTCGACGT</left_flank>
        <right_flank>TATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGT</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGTCTTCGTCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGGAAACAAATTCAACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTGGTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCATCGTCCGTGTGTAGATTGGCTTTAGATTGGTACGTTCTGTACCCATAAGAACTGATATTTTCACGAATATGGCGTGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCGAAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGATTCGACGTGTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGTCGTGTCGACTCGTATAGACTCACGTCGATTTGTGTCGACACTGTATCGACTCGTGTCGTGTCGATACGAATCGACACGACACGTGATTCCAAACGCCCTCTTTTGAACGGTAATTTTTGGAGGGAGTTCAATTTTTTTTGAATTCTTTGAAGTTTCGCATTGTTTATCGTCATGATGGCCTATCTTTTGACTGAAGAATTTTCTAGGCCACTATGCTGAAATGGCCTAGAGAACGTACCAGTCAAATATTATACCGTTTCTGAGCCAATGATACATGGTGGCCTAACTTTTTCATTCTAGGCCATCGCATAAAAATCACCCTGAAAACATACCAGGTGGATATCTGACTAATTCTAGGCCGAAAAAGTTTGTGGCCTAGAAAACTCAATTTGCGAAAGTTAGGCCACGTTGAGTACTTTAATATTTAAAAGAAGAAATTTAACGAAAAAT</canonical>
            <polymorphic>TGTGTCTTCGTCTCTTATTTTGCTGGTTTTGTTGTTCTTGTTTTGGTTATCACTTCCTCGGAAACAAATTCAACCTTGAATAGTTTCTTATTTTGTTTTCATTCACTTGTATCATATAAAACAGAAAAAATTGTTTATATTTCCTTTTTTTTTTGAATTTTCATAGGTAGCAAAACAGATTAGAAGTATCGGTCATATTTGAAGATCACAGTCAGAAAAGAACAAAGAAACGATTTGGTATTGATGATTTACAATTCTTGTGTGTATTTTTTCTGAGAAGAAACATCAAGAATTTTCTGCATCGTCCGTGTGTAGATTGGCTTTAGATTGGTACGTTCTGTACCCATAAGAACTGATATTTTCACGAATATGGCGTGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCGAAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGATTCGACGTRTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGTCGTGTCGACTCGTATAGACTCACGTCGATTTGTGTCGACACTGTATCGACTCGTGTCGTGTCGATACGAATCGACACGACACGTGATTCCAAACGCCCTCTTTTGAACGGTAATTTTTGGAGGGAGTTCAATTTTTTTTGAATTCTTTGAAGTTTCGCATTGTTTATCGTCATGATGGCCTATCTTTTGACTGAAGAATTTTCTAGGCCACTATGCTGAAATGGCCTAGAGAACGTACCAGTCAAATATTATACCGTTTCTGAGCCAATGATACATGGTGGCCTAACTTTTTCATTCTAGGCCATCGCATAAAAATCACCCTGAAAACATACCAGGTGGATATCTGACTAATTCTAGGCCGAAAAAGTTTGTGGCCTAGAAAACTCAATTTGCGAAAGTTAGGCCACGTTGAGTACTTTAATATTTAAAAGAAGAAATTTAACGAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>418 371 133 78</canonical_bands>
                <polymorphic_bands>418 371 211</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>125 103 70 54 53 52 48 46 45 44 43 38 35 33 22 20 18 17 16 15 13 13 12 12 10 10 6 5 5 5 4 4 2 2</canonical_bands>
                <polymorphic_bands>125 103 70 54 53 52 48 46 45 44 43 38 35 33 25 22 20 18 17 16 15 13 12 10 10 6 5 5 5 4 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGATAAGGCTTCAAAATAAGA</pcr_primer_p1>
		<pcr_primer_p2>AAAATTACCGTTCAAAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>292</pcr_amplicon_size>
		<canonical_amplicon>TGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCGAAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGATTCGACGTGTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGTCGTGTCGACTCGTATAGACTCACGTCGATTTGTGTCGACACTGTATCGACTCGTGTCGTGTCGATACGAATCGACACGACACGTGATTCCAAACGCCCTCTTTTGAACGGTAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TGAGATAAGGCTTCAAAATAAGAATATATAGTTATTAGAGTAACGTGTCGGCATAGAGTCGTATCGACACAAGCGAAAACCATCTGAAAAATCGTATCGACGCGAGTCGACACAGATTCGACGTRTATCGACTCGTGTTGCCTCGTGTCGACTCGTGTCGTGTTGACTCAACTGTCGTGTCGACTCGTATAGACTCACGTCGATTTGTGTCGACACTGTATCGACTCGTGTCGTGTCGATACGAATCGACACGACACGTGATTCCAAACGCCCTCTTTTGAACGGTAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31053</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>451156</contig_pos>
        <strand>+</strand>
        <context>CAAAATCCCY[C/T]ATTCCAATAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAGTCCGTTTCATTTTTCACTGTATTCCTCACATTTTAACAAAATCCCT</left_flank>
        <right_flank>ATTCCAATAGAATCATTCTATATTTCATCAAACTCTCCAAAAACTATTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTCAAAATTTGTCAACTGATGAATTGTTTATCATAATATCAACAATATTTTATTAATTGACAAATTTGTGATATCTTCCATACGAAGTAAGATAATTGAGCTCAAAGTTGACGGTTTATTGTGGACTTCCATCAGAGCAAATATGGTATTTTGGTTTTTGTGAAAATACAGTATTTTGGTTTTTACGGTTCAAAAAATGTTTACCTTGCAAAATATTTTTAATAAAATTATACTTTTTTTTTCCAGATGACTACATTCCCCTATTTCTAACAGAAAACGAGAGAAATTAGCTCAAAAGGGACAGTTAGGGACTAGAGAAATACAGAAAATTGTGTTAAACCAGATTTGAACTAAGTTTTTGACAAAAAATGCAATTTGCCTTCATTCCAAAAAACTACAGTAATCCACAAAAAATGGTTTTGACCAATTCAATTTTCTCTGAAAATTTGAGTCCGTTTCATTTTTCACTGTATTCCTCACATTTTAACAAAATCCCTCATTCCAATAGAATCATTCTATATTTCATCAAACTCTCCAAAAACTATTAAAACCCAATGAACACTCAAAACTTCTATTATTAAATCAAGGATTACCAGACTCCTTGAATTTCTTAGGGGTTTCATTTGAGAGTCATGTTTCAATAGAAGAAGAGGGAAAGATTCCTAACAGAGATAAGGATCTGTACGCATGTTTGCGAAATGAGTTTACCGAAAGGTATTAGGGTGTGATTAGTTAGAAGCAAAGCTTTATTTTTCGAAAAAGGGAGGAGGAGCGGAAAAGACAAAGAGTTGCGGCGAATGATCATATTCCGAAGCTCATTTTTCATTGGTACAACCGGACAGTGGGACCCCCAAAATGATACTCACCCCTTTTTTCAAAAGGGGGGACCTTCTCAAGAAAACAAAAAAGATATTTAGATGAGAAGAGGTTTGATTGATTTACATGTTTTTGGTAAGAACTGACACATATTAGGTTGTCAGGAAGCACGACATGAGACC</canonical>
            <polymorphic>CAGTCAAAATTTGTCAACTGATGAATTGTTTATCATAATATCAACAATATTTTATTAATTGACAAATTTGTGATATCTTCCATACGAAGTAAGATAATTGAGCTCAAAGTTGACGGTTTATTGTGGACTTCCATCAGAGCAAATATGGTATTTTGGTTTTTGTGAAAATACAGTATTTTGGTTTTTACGGTTCAAAAAATGTTTACCTTGCAAAATATTTTTAATAAAATTATACTTTTTTTTTCCAGATGACTACATTCCCCTATTTCTAACAGAAAACGAGAGAAATTAGCTCAAAAGGGACAGTTAGGGACTAGAGAAATACAGAAAATTGTGTTAAACCAGATTTGAACTAAGTTTTTGACAAAAAATGCAATTTGCCTTCATTCCAAAAAACTACAGTAATCCACAAAAAATGGTTTTGACCAATTCAATTTTCTCTGAAAATTTGAGTCCGTTTCATTTTTCACTGTATTCCTCACATTTTAACAAAATCCCTYATTCCAATAGAATCATTCTATATTTCATCAAACTCTCCAAAAACTATTAAAACCCAATGAACACTCAAAACTTCTATTATTAAATCAAGGATTACCAGACTCCTTGAATTTCTTAGGGGTTTCATTTGAGAGTCATGTTTCAATAGAAGAAGAGGGAAAGATTCCTAACAGAGATAAGGATCTGTACGCATGTTTGCGAAATGAGTTTACCGAAAGGTATTAGGGTGTGATTAGTTAGAAGCAAAGCTTTATTTTTCGAAAAAGGGAGGAGGAGCGGAAAAGACAAAGAGTTGCGGCGAATGATCATATTCCGAAGCTCATTTTTCATTGGTACAACCGGACAGTGGGACCCCCAAAATGATACTCACCCCTTTTTTCAAAAGGGGGGACCTTCTCAAGAAAACAAAAAAGATATTTAGATGAGAAGAGGTTTGATTGATTTACATGTTTTTGGTAAGAACTGACACATATTAGGTTGTCAGGAAGCACGACATGAGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGGGACTAGAGAAATACAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>GGGTTTTAATAGTTTTTGGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTAGGGACTAGAGAAATACAGAAAATTGTGTTAAACCAGATTTGAACTAAGTTTTTGACAAAAAATGCAATTTGCCTTCATTCCAAAAAACTACAGTAATCCACAAAAAATGGTTTTGACCAATTCAATTTTCTCTGAAAATTTGAGTCCGTTTCATTTTTCACTGTATTCCTCACATTTTAACAAAATCCCTCATTCCAATAGAATCATTCTATATTTCATCAAACTCTCCAAAAACTATTAAAACCC</canonical_amplicon>
		<polymorphic_amplicon>TTAGGGACTAGAGAAATACAGAAAATTGTGTTAAACCAGATTTGAACTAAGTTTTTGACAAAAAATGCAATTTGCCTTCATTCCAAAAAACTACAGTAATCCACAAAAAATGGTTTTGACCAATTCAATTTTCTCTGAAAATTTGAGTCCGTTTCATTTTTCACTGTATTCCTCACATTTTAACAAAATCCCTYATTCCAATAGAATCATTCTATATTTCATCAAACTCTCCAAAAACTATTAAAACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31054</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>451474</contig_pos>
        <strand>+</strand>
        <context>ATTCCGAAGC[C/T]CATTTTTCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAGGAGCGGAAAAGACAAAGAGTTGCGGCGAATGATCATATTCCGAAGC</left_flank>
        <right_flank>CATTTTTCATTGGTACAACCGGACAGTGGGACCCCCAAAATGATACTCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAATACAGAAAATTGTGTTAAACCAGATTTGAACTAAGTTTTTGACAAAAAATGCAATTTGCCTTCATTCCAAAAAACTACAGTAATCCACAAAAAATGGTTTTGACCAATTCAATTTTCTCTGAAAATTTGAGTCCGTTTCATTTTTCACTGTATTCCTCACATTTTAACAAAATCCCTCATTCCAATAGAATCATTCTATATTTCATCAAACTCTCCAAAAACTATTAAAACCCAATGAACACTCAAAACTTCTATTATTAAATCAAGGATTACCAGACTCCTTGAATTTCTTAGGGGTTTCATTTGAGAGTCATGTTTCAATAGAAGAAGAGGGAAAGATTCCTAACAGAGATAAGGATCTGTACGCATGTTTGCGAAATGAGTTTACCGAAAGGTATTAGGGTGTGATTAGTTAGAAGCAAAGCTTTATTTTTCGAAAAAGGGAGGAGGAGCGGAAAAGACAAAGAGTTGCGGCGAATGATCATATTCCGAAGCTCATTTTTCATTGGTACAACCGGACAGTGGGACCCCCAAAATGATACTCACCCCTTTTTTCAAAAGGGGGGACCTTCTCAAGAAAACAAAAAAGATATTTAGATGAGAAGAGGTTTGATTGATTTACATGTTTTTGGTAAGAACTGACACATATTAGGTTGTCAGGAAGCACGACATGAGACCCCTAGGAACATAACTACGGGGTTTTGATTTGAGATTCATTGCTACCTGTGTACGGGTATAATTCTTATTCCCCATTCGTTTACTACCACATTACTCCCTTTATATGGCTTCATCTCTTGTCATATTGCAGCTCACGCAACACGTTATGTTTGGACGCGCTAACCGTATGCAGCATTATATTTGAATCGATGTACACTAAAACGATTGATAACGTGATTAGGGTCCAAATAGGGTTAGAATTGATGATTTATTAGTGTTAGGAGGCAAGGAAGAGAGAGAGAGAGAGAGAGACAAAGAGAGACACGAGGGGGGAGAAAG</canonical>
            <polymorphic>GAAATACAGAAAATTGTGTTAAACCAGATTTGAACTAAGTTTTTGACAAAAAATGCAATTTGCCTTCATTCCAAAAAACTACAGTAATCCACAAAAAATGGTTTTGACCAATTCAATTTTCTCTGAAAATTTGAGTCCGTTTCATTTTTCACTGTATTCCTCACATTTTAACAAAATCCCTCATTCCAATAGAATCATTCTATATTTCATCAAACTCTCCAAAAACTATTAAAACCCAATGAACACTCAAAACTTCTATTATTAAATCAAGGATTACCAGACTCCTTGAATTTCTTAGGGGTTTCATTTGAGAGTCATGTTTCAATAGAAGAAGAGGGAAAGATTCCTAACAGAGATAAGGATCTGTACGCATGTTTGCGAAATGAGTTTACCGAAAGGTATTAGGGTGTGATTAGTTAGAAGCAAAGCTTTATTTTTCGAAAAAGGGAGGAGGAGCGGAAAAGACAAAGAGTTGCGGCGAATGATCATATTCCGAAGCYCATTTTTCATTGGTACAACCGGACAGTGGGACCCCCAAAATGATACTCACCCCTTTTTTCAAAAGGGGGGACCTTCTCAAGAAAACAAAAAAGATATTTAGATGAGAAGAGGTTTGATTGATTTACATGTTTTTGGTAAGAACTGACACATATTAGGTTGTCAGGAAGCACGACATGAGACCCCTAGGAACATAACTACGGGGTTTTGATTTGAGATTCATTGCTACCTGTGTACGGGTATAATTCTTATTCCCCATTCGTTTACTACCACATTACTCCCTTTATATGGCTTCATCTCTTGTCATATTGCAGCTCACGCAACACGTTATGTTTGGACGCGCTAACCGTATGCAGCATTATATTTGAATCGATGTACACTAAAACGATTGATAACGTGATTAGGGTCCAAATAGGGTTAGAATTGATGATTTATTAGTGTTAGGAGGCAAGGAAGAGAGAGAGAGAGAGAGAGACAAAGAGAGACACGAGGGGGGAGAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>428 314 188 70</canonical_bands>
                <polymorphic_bands>428 384 188</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>428 291 188 70 23</canonical_bands>
                <polymorphic_bands>428 361 188 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGAGTTTACCGAAAGGTATT</pcr_primer_p1>
		<pcr_primer_p2>AACATGTAAATCAATCAAACCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAATGAGTTTACCGAAAGGTATTAGGGTGTGATTAGTTAGAAGCAAAGCTTTATTTTTCGAAAAAGGGAGGAGGAGCGGAAAAGACAAAGAGTTGCGGCGAATGATCATATTCCGAAGCTCATTTTTCATTGGTACAACCGGACAGTGGGACCCCCAAAATGATACTCACCCCTTTTTTCAAAAGGGGGGACCTTCTCAAGAAAACAAAAAAGATATTTAGATGAGAAGAGGTTTGATTGATTTACATGTT</canonical_amplicon>
		<polymorphic_amplicon>AAATGAGTTTACCGAAAGGTATTAGGGTGTGATTAGTTAGAAGCAAAGCTTTATTTTTCGAAAAAGGGAGGAGGAGCGGAAAAGACAAAGAGTTGCGGCGAATGATCATATTCCGAAGCYCATTTTTCATTGGTACAACCGGACAGTGGGACCCCCAAAATGATACTCACCCCTTTTTTCAAAAGGGGGGACCTTCTCAAGAAAACAAAAAAGATATTTAGATGAGAAGAGGTTTGATTGATTTACATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31055</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>451490</contig_pos>
        <strand>+</strand>
        <context>TTCATTGGTA[C/T]AACCGGACAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAAGAGTTGCGGCGAATGATCATATTCCGAAGCTCATTTTTCATTGGTA</left_flank>
        <right_flank>AACCGGACAGTGGGACCCCCAAAATGATACTCACCCCTTTTTTCAAAAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTAAACCAGATTTGAACTAAGTTTTTGACAAAAAATGCAATTTGCCTTCATTCCAAAAAACTACAGTAATCCACAAAAAATGGTTTTGACCAATTCAATTTTCTCTGAAAATTTGAGTCCGTTTCATTTTTCACTGTATTCCTCACATTTTAACAAAATCCCTCATTCCAATAGAATCATTCTATATTTCATCAAACTCTCCAAAAACTATTAAAACCCAATGAACACTCAAAACTTCTATTATTAAATCAAGGATTACCAGACTCCTTGAATTTCTTAGGGGTTTCATTTGAGAGTCATGTTTCAATAGAAGAAGAGGGAAAGATTCCTAACAGAGATAAGGATCTGTACGCATGTTTGCGAAATGAGTTTACCGAAAGGTATTAGGGTGTGATTAGTTAGAAGCAAAGCTTTATTTTTCGAAAAAGGGAGGAGGAGCGGAAAAGACAAAGAGTTGCGGCGAATGATCATATTCCGAAGCTCATTTTTCATTGGTACAACCGGACAGTGGGACCCCCAAAATGATACTCACCCCTTTTTTCAAAAGGGGGGACCTTCTCAAGAAAACAAAAAAGATATTTAGATGAGAAGAGGTTTGATTGATTTACATGTTTTTGGTAAGAACTGACACATATTAGGTTGTCAGGAAGCACGACATGAGACCCCTAGGAACATAACTACGGGGTTTTGATTTGAGATTCATTGCTACCTGTGTACGGGTATAATTCTTATTCCCCATTCGTTTACTACCACATTACTCCCTTTATATGGCTTCATCTCTTGTCATATTGCAGCTCACGCAACACGTTATGTTTGGACGCGCTAACCGTATGCAGCATTATATTTGAATCGATGTACACTAAAACGATTGATAACGTGATTAGGGTCCAAATAGGGTTAGAATTGATGATTTATTAGTGTTAGGAGGCAAGGAAGAGAGAGAGAGAGAGAGAGACAAAGAGAGACACGAGGGGGGAGAAAGGGTGTGATAATCTGTC</canonical>
            <polymorphic>TGTTAAACCAGATTTGAACTAAGTTTTTGACAAAAAATGCAATTTGCCTTCATTCCAAAAAACTACAGTAATCCACAAAAAATGGTTTTGACCAATTCAATTTTCTCTGAAAATTTGAGTCCGTTTCATTTTTCACTGTATTCCTCACATTTTAACAAAATCCCTCATTCCAATAGAATCATTCTATATTTCATCAAACTCTCCAAAAACTATTAAAACCCAATGAACACTCAAAACTTCTATTATTAAATCAAGGATTACCAGACTCCTTGAATTTCTTAGGGGTTTCATTTGAGAGTCATGTTTCAATAGAAGAAGAGGGAAAGATTCCTAACAGAGATAAGGATCTGTACGCATGTTTGCGAAATGAGTTTACCGAAAGGTATTAGGGTGTGATTAGTTAGAAGCAAAGCTTTATTTTTCGAAAAAGGGAGGAGGAGCGGAAAAGACAAAGAGTTGCGGCGAATGATCATATTCCGAAGCTCATTTTTCATTGGTAYAACCGGACAGTGGGACCCCCAAAATGATACTCACCCCTTTTTTCAAAAGGGGGGACCTTCTCAAGAAAACAAAAAAGATATTTAGATGAGAAGAGGTTTGATTGATTTACATGTTTTTGGTAAGAACTGACACATATTAGGTTGTCAGGAAGCACGACATGAGACCCCTAGGAACATAACTACGGGGTTTTGATTTGAGATTCATTGCTACCTGTGTACGGGTATAATTCTTATTCCCCATTCGTTTACTACCACATTACTCCCTTTATATGGCTTCATCTCTTGTCATATTGCAGCTCACGCAACACGTTATGTTTGGACGCGCTAACCGTATGCAGCATTATATTTGAATCGATGTACACTAAAACGATTGATAACGTGATTAGGGTCCAAATAGGGTTAGAATTGATGATTTATTAGTGTTAGGAGGCAAGGAAGAGAGAGAGAGAGAGAGAGACAAAGAGAGACACGAGGGGGGAGAAAGGGTGTGATAATCTGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>351 219 147 142 141</canonical_bands>
                <polymorphic_bands>366 351 142 141</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGAGTTTACCGAAAGGTATT</pcr_primer_p1>
		<pcr_primer_p2>AACATGTAAATCAATCAAACCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAATGAGTTTACCGAAAGGTATTAGGGTGTGATTAGTTAGAAGCAAAGCTTTATTTTTCGAAAAAGGGAGGAGGAGCGGAAAAGACAAAGAGTTGCGGCGAATGATCATATTCCGAAGCTCATTTTTCATTGGTACAACCGGACAGTGGGACCCCCAAAATGATACTCACCCCTTTTTTCAAAAGGGGGGACCTTCTCAAGAAAACAAAAAAGATATTTAGATGAGAAGAGGTTTGATTGATTTACATGTT</canonical_amplicon>
		<polymorphic_amplicon>AAATGAGTTTACCGAAAGGTATTAGGGTGTGATTAGTTAGAAGCAAAGCTTTATTTTTCGAAAAAGGGAGGAGGAGCGGAAAAGACAAAGAGTTGCGGCGAATGATCATATTCCGAAGCTCATTTTTCATTGGTAYAACCGGACAGTGGGACCCCCAAAATGATACTCACCCCTTTTTTCAAAAGGGGGGACCTTCTCAAGAAAACAAAAAAGATATTTAGATGAGAAGAGGTTTGATTGATTTACATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31056</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>452830</contig_pos>
        <strand>+</strand>
        <context>TTTCGCCAAT[C/T]GGGAGCCGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCCGGTTTCTCGCGCCCCAATTTCGCACTTCTCACCTCCTTTCGCCAAT</left_flank>
        <right_flank>GGGAGCCGGGGATAAATGGCTGTGAAAGCATGACCCCACTACTGAACACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGGCCATGTTCTCACATTTCATTTTGATTTGTTCGGATCACTTTGTACTTTTTTGTTAGTTCCTTTAACTCTTTTAACTCTCGAAGGATTATAAAAATTTGTTTCATTTTGGCAACTTTTACCCCCTCTCTACTATCCCATTTAAGTTAAACCCCTCTCCTCACAAAAGCGTACACAACTCATGGCGTCGCTCCTTCTCAATTGGTCGAGGCTTAAAACCACGCCCACAATTCACAATTTCACACGTTTTTATGTGTGCTTGTCATACCAAATGTGTGTGTGCCCCTCCCCCTCTTTTATTTGGATACCCCTCTTGAAAAAGGTCCCACGACTCCTTTCAGCGTTTTTCCCAAAAGTTACAGTTTTAAAGACGTTATGGTAGGTCAATTCAATTTAAAAAGTTGGAGAGAAAGGGAAGAAATAAAAATAGTGGGGTCCCTTATGCAAATCCGGTTTCTCGCGCCCCAATTTCGCACTTCTCACCTCCTTTCGCCAATTGGGAGCCGGGGATAAATGGCTGTGAAAGCATGACCCCACTACTGAACACTTTTTCTCTCAAACATTTTAGGTGACGCTTCGTTTAGCCTGTGATGTGTGTTGTTTTTTTCGCCTAAATGTCATTTGTTTCAATAAAATTCTCTTATCTACAGTAAGAGTTTCTTAGGTCTCGCGCCCGGAGTCAGGTCACACTAGGTTTTGTGTTCTGAGCCGTTAATAAACTCTTAATAATTTTAATAATTCACTTGCAAAGAAGTGAATTTTGATGACGTCTTTGAGAGGGTGAGTAGTTTCGAAAAATATGTTTGTGAGTAATTTGATTAAAATCATCACAGATGAATTTTTGATAAAATGTCTTCCTACATCTTTAAATTAAGCCATCTTATACATGTATTTTAAGCTCAATTATCTCAATTCCTGCGAGAGATATCAAATATTGGCCAACTAATAAAATGTTAGTAATGTTATGTCAAACGTTTTGTCAGTTGATAACTTTTATA</canonical>
            <polymorphic>TCTGGCCATGTTCTCACATTTCATTTTGATTTGTTCGGATCACTTTGTACTTTTTTGTTAGTTCCTTTAACTCTTTTAACTCTCGAAGGATTATAAAAATTTGTTTCATTTTGGCAACTTTTACCCCCTCTCTACTATCCCATTTAAGTTAAACCCCTCTCCTCACAAAAGCGTACACAACTCATGGCGTCGCTCCTTCTCAATTGGTCGAGGCTTAAAACCACGCCCACAATTCACAATTTCACACGTTTTTATGTGTGCTTGTCATACCAAATGTGTGTGTGCCCCTCCCCCTCTTTTATTTGGATACCCCTCTTGAAAAAGGTCCCACGACTCCTTTCAGCGTTTTTCCCAAAAGTTACAGTTTTAAAGACGTTATGGTAGGTCAATTCAATTTAAAAAGTTGGAGAGAAAGGGAAGAAATAAAAATAGTGGGGTCCCTTATGCAAATCCGGTTTCTCGCGCCCCAATTTCGCACTTCTCACCTCCTTTCGCCAATYGGGAGCCGGGGATAAATGGCTGTGAAAGCATGACCCCACTACTGAACACTTTTTCTCTCAAACATTTTAGGTGACGCTTCGTTTAGCCTGTGATGTGTGTTGTTTTTTTCGCCTAAATGTCATTTGTTTCAATAAAATTCTCTTATCTACAGTAAGAGTTTCTTAGGTCTCGCGCCCGGAGTCAGGTCACACTAGGTTTTGTGTTCTGAGCCGTTAATAAACTCTTAATAATTTTAATAATTCACTTGCAAAGAAGTGAATTTTGATGACGTCTTTGAGAGGGTGAGTAGTTTCGAAAAATATGTTTGTGAGTAATTTGATTAAAATCATCACAGATGAATTTTTGATAAAATGTCTTCCTACATCTTTAAATTAAGCCATCTTATACATGTATTTTAAGCTCAATTATCTCAATTCCTGCGAGAGATATCAAATATTGGCCAACTAATAAAATGTTAGTAATGTTATGTCAAACGTTTTGTCAGTTGATAACTTTTATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>504 295 201</canonical_bands>
                <polymorphic_bands>799 201</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>150 139 104 97 94 88 76 55 33 32 29 28 25 20 9 9 7 5</canonical_bands>
                <polymorphic_bands>167 150 104 97 94 88 76 55 33 32 29 25 20 9 9 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATTTAAAAAGTTGGAGAGAAA</pcr_primer_p1>
		<pcr_primer_p2>AGAATTTTATTGAAACAAATGACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAATTTAAAAAGTTGGAGAGAAAGGGAAGAAATAAAAATAGTGGGGTCCCTTATGCAAATCCGGTTTCTCGCGCCCCAATTTCGCACTTCTCACCTCCTTTCGCCAATTGGGAGCCGGGGATAAATGGCTGTGAAAGCATGACCCCACTACTGAACACTTTTTCTCTCAAACATTTTAGGTGACGCTTCGTTTAGCCTGTGATGTGTGTTGTTTTTTTCGCCTAAATGTCATTTGTTTCAATAAAATTCT</canonical_amplicon>
		<polymorphic_amplicon>CAATTTAAAAAGTTGGAGAGAAAGGGAAGAAATAAAAATAGTGGGGTCCCTTATGCAAATCCGGTTTCTCGCGCCCCAATTTCGCACTTCTCACCTCCTTTCGCCAATYGGGAGCCGGGGATAAATGGCTGTGAAAGCATGACCCCACTACTGAACACTTTTTCTCTCAAACATTTTAGGTGACGCTTCGTTTAGCCTGTGATGTGTGTTGTTTTTTTCGCCTAAATGTCATTTGTTTCAATAAAATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31057</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>453336</contig_pos>
        <strand></strand>
        <context>ttatatatat[C/A]tatatatata</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTAGTAATGTTATGTCAAACGTTTTGTCAGTTGATAACTTTTATATATAT</left_flank>
        <right_flank>TATATATATATATAAATATCACAGATACCGATATAATTGAGCTCAAAGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGGGATAAATGGCTGTGAAAGCATGACCCCACTACTGAACACTTTTTCTCTCAAACATTTTAGGTGACGCTTCGTTTAGCCTGTGATGTGTGTTGTTTTTTTCGCCTAAATGTCATTTGTTTCAATAAAATTCTCTTATCTACAGTAAGAGTTTCTTAGGTCTCGCGCCCGGAGTCAGGTCACACTAGGTTTTGTGTTCTGAGCCGTTAATAAACTCTTAATAATTTTAATAATTCACTTGCAAAGAAGTGAATTTTGATGACGTCTTTGAGAGGGTGAGTAGTTTCGAAAAATATGTTTGTGAGTAATTTGATTAAAATCATCACAGATGAATTTTTGATAAAATGTCTTCCTACATCTTTAAATTAAGCCATCTTATACATGTATTTTAAGCTCAATTATCTCAATTCCTGCGAGAGATATCAAATATTGGCCAACTAATAAAATGTTAGTAATGTTATGTCAAACGTTTTGTCAGTTGATAACTTTTATATATATCTATATATATATATAAATATCACAGATACCGATATAATTGAGCTCAAAGTTTTTGTACAAGATGAGATTAGAGCATGAACGGTATCTATCGTATTTTCTCTAATAGAAACCCATCAAATACGTGCACTTTAAGCTTAATTATCTCGGTTCTTCAAACAGACATCAAAAACTTCTTAAGTAATGAAATATTAGTGATTTTTTGACAAACATTTTAACAGTTTTCAGTTTTTCGATATCTCTCATTGAAACCGAGATAATTGAGTTTAAAGCGCGTACAGGATGACTAGACTGATGGATTTTTTGATGAGCAATCTTGGCAGAGGTTTCTTTAAAAATTATATTCCACCATTCAATATCCCAGCTTTTGATTTTCTTTCCTACCATAACCACATTACCCATTCATTCACTTTTTGGAATTCGTTCGATAGAGTTTCTTCCCGAATCTTTGGCTGCATTAGAATGTCACTCTTTACTTGAACTTCGAGCTCAATTATCTCGGTT</canonical>
            <polymorphic>CGGGGATAAATGGCTGTGAAAGCATGACCCCACTACTGAACACTTTTTCTCTCAAACATTTTAGGTGACGCTTCGTTTAGCCTGTGATGTGTGTTGTTTTTTTCGCCTAAATGTCATTTGTTTCAATAAAATTCTCTTATCTACAGTAAGAGTTTCTTAGGTCTCGCGCCCGGAGTCAGGTCACACTAGGTTTTGTGTTCTGAGCCGTTAATAAACTCTTAATAATTTTAATAATTCACTTGCAAAGAAGTGAATTTTGATGACGTCTTTGAGAGGGTGAGTAGTTTCGAAAAATATGTTTGTGAGTAATTTGATTAAAATCATCACAGATGAATTTTTGATAAAATGTCTTCCTACATCTTTAAATTAAGCCATCTTATACATGTATTTTAAGCTCAATTATCTCAATTCCTGCGAGAGATATCAAATATTGGCCAACTAATAAAATGTTAGTAATGTTATGTCAAACGTTTTGTCAGTTGATAACTTTTATATATATMTATATATATATATAAATATCACAGATACCGATATAATTGAGCTCAAAGTTTTTGTACAAGATGAGATTAGAGCATGAACGGTATCTATCGTATTTTCTCTAATAGAAACCCATCAAATACGTGCACTTTAAGCTTAATTATCTCGGTTCTTCAAACAGACATCAAAAACTTCTTAAGTAATGAAATATTAGTGATTTTTTGACAAACATTTTAACAGTTTTCAGTTTTTCGATATCTCTCATTGAAACCGAGATAATTGAGTTTAAAGCGCGTACAGGATGACTAGACTGATGGATTTTTTGATGAGCAATCTTGGCAGAGGTTTCTTTAAAAATTATATTCCACCATTCAATATCCCAGCTTTTGATTTTCTTTCCTACCATAACCACATTACCCATTCATTCACTTTTTGGAATTCGTTCGATAGAGTTTCTTCCCGAATCTTTGGCTGCATTAGAATGTCACTCTTTACTTGAACTTCGAGCTCAATTATCTCGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGATAAAATGTCTTCCTACA</pcr_primer_p1>
		<pcr_primer_p2>ATACCGTTCATGCTCTAATCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGATAAAATGTCTTCCTACATCTTTAAATTAAGCCATCTTATACATGTATTTTAAGCTCAATTATCTCAATTCCTGCGAGAGATATCAAATATTGGCCAACTAATAAAATGTTAGTAATGTTATGTCAAACGTTTTGTCAGTTGATAACTTTTATATATATCTATATATATATATAAATATCACAGATACCGATATAATTGAGCTCAAAGTTTTTGTACAAGATGAGATTAGAGCATGAACGGTAT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGATAAAATGTCTTCCTACATCTTTAAATTAAGCCATCTTATACATGTATTTTAAGCTCAATTATCTCAATTCCTGCGAGAGATATCAAATATTGGCCAACTAATAAAATGTTAGTAATGTTATGTCAAACGTTTTGTCAGTTGATAACTTTTATATATATMTATATATATATATAAATATCACAGATACCGATATAATTGAGCTCAAAGTTTTTGTACAAGATGAGATTAGAGCATGAACGGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31058</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>455371</contig_pos>
        <strand>+</strand>
        <context>CTCGAGGTGT[G/T]TSRAAAGTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTAATCCTTTTCAAGTAGAGTAGTTGACTTGAATCGAGACCTCGAGGTGT</left_flank>
        <right_flank>TGGAAAGTGAAGGATCTGTAGTGTGATCAGGGTTACTGTAGCAACAGTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAAAATGCTCATCCCCTTCATTTTTCCTTTTTCTTCTCCTTCGTTTACACCCATATATTATTACAAGAATTTCACTTTTACATAGATTTTGTTGCGCAATCATTTCTAATCCTCCAAAATTTAATCTTTTGTTTTCCTTTTTTCTTTTTTCTCTCTCCGAGTAGAAACTACGATTAGTTTTATGGCTGGTCCAAATGAGCCCCATGGATTCAATTTTTGATGGTGAAGAATACCGAGACATGAGAAGTTTTCCCCCTTTCTTTCTATAAAATAGGCACACATGGAATCATCATTTAAAAACCAAAAGAAAGTGGTATATGGGTTAAACGGGAAACGGGTCCCCCCCCCCCCCCCCATCTTCGTGTAATTCCTCAAACATCAAACATGTCGTACAAAGCCGAAATGACAGAATGCTTTTGGTTATTGGCTCAAAATGGCACAATTATGCTAATCCTTTTCAAGTAGAGTAGTTGACTTGAATCGAGACCTCGAGGTGTTTGGAAAGTGAAGGATCTGTAGTGTGATCAGGGTTACTGTAGCAACAGTCAGAGGAAGCAGGTTGGGAAATCTCCCAGTTCATTTTTTCAAAATTTTTAAAGTCGAGTTTCCGATCAGATTTTGAGTTTTGGAGGTTGTGAAATAAACTTAGTTTAAAATTTTGCATTTACAGACTTTTCGAAAATTCCTATTTTTTCAGTTATTTGCCGATTTCTGAAAGACGTTCCTTTTTGGTCCGTTTTTTGCACTAAAAACGAAAAAATAGGTGTTTTTCAAAAAACGGCAAATAGCTGAAAAACTAGGAATTTTCACAAAAATTATGTTGATGCAAAAAAAGTATATTTTACACCATCCAAGATTTTCAAAGTGATCGAAAACTTGACAGCCGAGCTCCAGACGCCTGAAAATGATCAAACTGGTCAAAAACTAACTGAAAATTGAAAAAATTCAAGTCCGGCAGCGATATTGGCGTCTTGCGCCTTTAAACATTTCAAGATTTT</canonical>
            <polymorphic>TGGAAAATGCTCATCCCCTTCATTTTTCCTTTTTCTTCTCCTTCGTTTACACCCATATATTATTACAAGAATTTCACTTTTACATAGATTTTGTTGCGCAATCATTTCTAATCCTCCAAAATTTAATCTTTTGTTTTCCTTTTTTCTTTTTTCTCTCTCCGAGTAGAAACTACGATTAGTTTTATGGCTGGTCCAAATGAGCCCCATGGATTCAATTTTTGATGGTGAAGAATACCGAGACATGAGAAGTTTTCCCCCTTTCTTTCTATAAAATAGGCACACATGGAATCATCATTTAAAAACCAAAAGAAAGTGGTATATGGGTTAAACGGGAAACGGGTCCCCCCCCCCCCCCCCATCTTCGTGTAATTCCTCAAACATCAAACATGTCGTACAAAGCCGAAATGACAGAATGCTTTTGGTTATTGGCTCAAAATGGCACAATTATGCTAATCCTTTTCAAGTAGAGTAGTTGACTTGAATCGAGACCTCGAGGTGTKTGGAAAGTGAAGGATCTGTAGTGTGATCAGGGTTACTGTAGCAACAGTCAGAGGAAGCAGGTTGGGAAATCTCCCAGTTCATTTTTTCAAAATTTTTAAAGTCGAGTTTCCGATCAGATTTTGAGTTTTGGAGGTTGTGAAATAAACTTAGTTTAAAATTTTGCATTTACAGACTTTTCGAAAATTCCTATTTTTTCAGTTATTTGCCGATTTCTGAAAGACGTTCCTTTTTGGTCCGTTTTTTGCACTAAAAACGAAAAAATAGGTGTTTTTCAAAAAACGGCAAATAGCTGAAAAACTAGGAATTTTCACAAAAATTATGTTGATGCAAAAAAAGTATATTTTACACCATCCAAGATTTTCAAAGTGATCGAAAACTTGACAGCCGAGCTCCAGACGCCTGAAAATGATCAAACTGGTCAAAAACTAACTGAAAATTGAAAAAATTCAAGTCCGGCAGCGATATTGGCGTCTTGCGCCTTTAAACATTTCAAGATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAAAGTGGTATATGGGTTAAA</pcr_primer_p1>
		<pcr_primer_p2>GCTTCCTCTGACTGTTGCTA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAAGAAAGTGGTATATGGGTTAAACGGGAAACGGGTCCCCCCCCCCCCCCCCATCTTCGTGTAATTCCTCAAACATCAAACATGTCGTACAAAGCCGAAATGACAGAATGCTTTTGGTTATTGGCTCAAAATGGCACAATTATGCTAATCCTTTTCAAGTAGAGTAGTTGACTTGAATCGAGACCTCGAGGTGTTTGGAAAGTGAAGGATCTGTAGTGTGATCAGGGTTACTGTAGCAACAGTCAGAGGAAGC</canonical_amplicon>
		<polymorphic_amplicon>AAAGAAAGTGGTATATGGGTTAAACGGGAAACGGGTCCCCCCCCCCCCCCCCATCTTCGTGTAATTCCTCAAACATCAAACATGTCGTACAAAGCCGAAATGACAGAATGCTTTTGGTTATTGGCTCAAAATGGCACAATTATGCTAATCCTTTTCAAGTAGAGTAGTTGACTTGAATCGAGACCTCGAGGTGTKTGGAAAGTGAAGGATCTGTAGTGTGATCAGGGTTACTGTAGCAACAGTCAGAGGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31059</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>455373</contig_pos>
        <strand></strand>
        <context>CGAGGTGTKT[G/C]RAAAGTGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AATCCTTTTCAAGTAGAGTAGTTGACTTGAATCGAGACCTCGAGGTGTTT</left_flank>
        <right_flank>GAAAGTGAAGGATCTGTAGTGTGATCAGGGTTACTGTAGCAACAGTCAGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAATGCTCATCCCCTTCATTTTTCCTTTTTCTTCTCCTTCGTTTACACCCATATATTATTACAAGAATTTCACTTTTACATAGATTTTGTTGCGCAATCATTTCTAATCCTCCAAAATTTAATCTTTTGTTTTCCTTTTTTCTTTTTTCTCTCTCCGAGTAGAAACTACGATTAGTTTTATGGCTGGTCCAAATGAGCCCCATGGATTCAATTTTTGATGGTGAAGAATACCGAGACATGAGAAGTTTTCCCCCTTTCTTTCTATAAAATAGGCACACATGGAATCATCATTTAAAAACCAAAAGAAAGTGGTATATGGGTTAAACGGGAAACGGGTCCCCCCCCCCCCCCCCATCTTCGTGTAATTCCTCAAACATCAAACATGTCGTACAAAGCCGAAATGACAGAATGCTTTTGGTTATTGGCTCAAAATGGCACAATTATGCTAATCCTTTTCAAGTAGAGTAGTTGACTTGAATCGAGACCTCGAGGTGTTTGGAAAGTGAAGGATCTGTAGTGTGATCAGGGTTACTGTAGCAACAGTCAGAGGAAGCAGGTTGGGAAATCTCCCAGTTCATTTTTTCAAAATTTTTAAAGTCGAGTTTCCGATCAGATTTTGAGTTTTGGAGGTTGTGAAATAAACTTAGTTTAAAATTTTGCATTTACAGACTTTTCGAAAATTCCTATTTTTTCAGTTATTTGCCGATTTCTGAAAGACGTTCCTTTTTGGTCCGTTTTTTGCACTAAAAACGAAAAAATAGGTGTTTTTCAAAAAACGGCAAATAGCTGAAAAACTAGGAATTTTCACAAAAATTATGTTGATGCAAAAAAAGTATATTTTACACCATCCAAGATTTTCAAAGTGATCGAAAACTTGACAGCCGAGCTCCAGACGCCTGAAAATGATCAAACTGGTCAAAAACTAACTGAAAATTGAAAAAATTCAAGTCCGGCAGCGATATTGGCGTCTTGCGCCTTTAAACATTTCAAGATTTTTG</canonical>
            <polymorphic>GAAAATGCTCATCCCCTTCATTTTTCCTTTTTCTTCTCCTTCGTTTACACCCATATATTATTACAAGAATTTCACTTTTACATAGATTTTGTTGCGCAATCATTTCTAATCCTCCAAAATTTAATCTTTTGTTTTCCTTTTTTCTTTTTTCTCTCTCCGAGTAGAAACTACGATTAGTTTTATGGCTGGTCCAAATGAGCCCCATGGATTCAATTTTTGATGGTGAAGAATACCGAGACATGAGAAGTTTTCCCCCTTTCTTTCTATAAAATAGGCACACATGGAATCATCATTTAAAAACCAAAAGAAAGTGGTATATGGGTTAAACGGGAAACGGGTCCCCCCCCCCCCCCCCATCTTCGTGTAATTCCTCAAACATCAAACATGTCGTACAAAGCCGAAATGACAGAATGCTTTTGGTTATTGGCTCAAAATGGCACAATTATGCTAATCCTTTTCAAGTAGAGTAGTTGACTTGAATCGAGACCTCGAGGTGTTTSGAAAGTGAAGGATCTGTAGTGTGATCAGGGTTACTGTAGCAACAGTCAGAGGAAGCAGGTTGGGAAATCTCCCAGTTCATTTTTTCAAAATTTTTAAAGTCGAGTTTCCGATCAGATTTTGAGTTTTGGAGGTTGTGAAATAAACTTAGTTTAAAATTTTGCATTTACAGACTTTTCGAAAATTCCTATTTTTTCAGTTATTTGCCGATTTCTGAAAGACGTTCCTTTTTGGTCCGTTTTTTGCACTAAAAACGAAAAAATAGGTGTTTTTCAAAAAACGGCAAATAGCTGAAAAACTAGGAATTTTCACAAAAATTATGTTGATGCAAAAAAAGTATATTTTACACCATCCAAGATTTTCAAAGTGATCGAAAACTTGACAGCCGAGCTCCAGACGCCTGAAAATGATCAAACTGGTCAAAAACTAACTGAAAATTGAAAAAATTCAAGTCCGGCAGCGATATTGGCGTCTTGCGCCTTTAAACATTTCAAGATTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAAAGTGGTATATGGGTTAAA</pcr_primer_p1>
		<pcr_primer_p2>GCTTCCTCTGACTGTTGCTA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAAGAAAGTGGTATATGGGTTAAACGGGAAACGGGTCCCCCCCCCCCCCCCCATCTTCGTGTAATTCCTCAAACATCAAACATGTCGTACAAAGCCGAAATGACAGAATGCTTTTGGTTATTGGCTCAAAATGGCACAATTATGCTAATCCTTTTCAAGTAGAGTAGTTGACTTGAATCGAGACCTCGAGGTGTTTGGAAAGTGAAGGATCTGTAGTGTGATCAGGGTTACTGTAGCAACAGTCAGAGGAAGC</canonical_amplicon>
		<polymorphic_amplicon>AAAGAAAGTGGTATATGGGTTAAACGGGAAACGGGTCCCCCCCCCCCCCCCCATCTTCGTGTAATTCCTCAAACATCAAACATGTCGTACAAAGCCGAAATGACAGAATGCTTTTGGTTATTGGCTCAAAATGGCACAATTATGCTAATCCTTTTCAAGTAGAGTAGTTGACTTGAATCGAGACCTCGAGGTGTTTSGAAAGTGAAGGATCTGTAGTGTGATCAGGGTTACTGTAGCAACAGTCAGAGGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31060</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>455374</contig_pos>
        <strand></strand>
        <context>GAGGTGTKTS[G/A]AAAGTGAAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATCCTTTTCAAGTAGAGTAGTTGACTTGAATCGAGACCTCGAGGTGTTTG</left_flank>
        <right_flank>AAAGTGAAGGATCTGTAGTGTGATCAGGGTTACTGTAGCAACAGTCAGAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATGCTCATCCCCTTCATTTTTCCTTTTTCTTCTCCTTCGTTTACACCCATATATTATTACAAGAATTTCACTTTTACATAGATTTTGTTGCGCAATCATTTCTAATCCTCCAAAATTTAATCTTTTGTTTTCCTTTTTTCTTTTTTCTCTCTCCGAGTAGAAACTACGATTAGTTTTATGGCTGGTCCAAATGAGCCCCATGGATTCAATTTTTGATGGTGAAGAATACCGAGACATGAGAAGTTTTCCCCCTTTCTTTCTATAAAATAGGCACACATGGAATCATCATTTAAAAACCAAAAGAAAGTGGTATATGGGTTAAACGGGAAACGGGTCCCCCCCCCCCCCCCCATCTTCGTGTAATTCCTCAAACATCAAACATGTCGTACAAAGCCGAAATGACAGAATGCTTTTGGTTATTGGCTCAAAATGGCACAATTATGCTAATCCTTTTCAAGTAGAGTAGTTGACTTGAATCGAGACCTCGAGGTGTTTGGAAAGTGAAGGATCTGTAGTGTGATCAGGGTTACTGTAGCAACAGTCAGAGGAAGCAGGTTGGGAAATCTCCCAGTTCATTTTTTCAAAATTTTTAAAGTCGAGTTTCCGATCAGATTTTGAGTTTTGGAGGTTGTGAAATAAACTTAGTTTAAAATTTTGCATTTACAGACTTTTCGAAAATTCCTATTTTTTCAGTTATTTGCCGATTTCTGAAAGACGTTCCTTTTTGGTCCGTTTTTTGCACTAAAAACGAAAAAATAGGTGTTTTTCAAAAAACGGCAAATAGCTGAAAAACTAGGAATTTTCACAAAAATTATGTTGATGCAAAAAAAGTATATTTTACACCATCCAAGATTTTCAAAGTGATCGAAAACTTGACAGCCGAGCTCCAGACGCCTGAAAATGATCAAACTGGTCAAAAACTAACTGAAAATTGAAAAAATTCAAGTCCGGCAGCGATATTGGCGTCTTGCGCCTTTAAACATTTCAAGATTTTTGA</canonical>
            <polymorphic>AAAATGCTCATCCCCTTCATTTTTCCTTTTTCTTCTCCTTCGTTTACACCCATATATTATTACAAGAATTTCACTTTTACATAGATTTTGTTGCGCAATCATTTCTAATCCTCCAAAATTTAATCTTTTGTTTTCCTTTTTTCTTTTTTCTCTCTCCGAGTAGAAACTACGATTAGTTTTATGGCTGGTCCAAATGAGCCCCATGGATTCAATTTTTGATGGTGAAGAATACCGAGACATGAGAAGTTTTCCCCCTTTCTTTCTATAAAATAGGCACACATGGAATCATCATTTAAAAACCAAAAGAAAGTGGTATATGGGTTAAACGGGAAACGGGTCCCCCCCCCCCCCCCCATCTTCGTGTAATTCCTCAAACATCAAACATGTCGTACAAAGCCGAAATGACAGAATGCTTTTGGTTATTGGCTCAAAATGGCACAATTATGCTAATCCTTTTCAAGTAGAGTAGTTGACTTGAATCGAGACCTCGAGGTGTTTGRAAAGTGAAGGATCTGTAGTGTGATCAGGGTTACTGTAGCAACAGTCAGAGGAAGCAGGTTGGGAAATCTCCCAGTTCATTTTTTCAAAATTTTTAAAGTCGAGTTTCCGATCAGATTTTGAGTTTTGGAGGTTGTGAAATAAACTTAGTTTAAAATTTTGCATTTACAGACTTTTCGAAAATTCCTATTTTTTCAGTTATTTGCCGATTTCTGAAAGACGTTCCTTTTTGGTCCGTTTTTTGCACTAAAAACGAAAAAATAGGTGTTTTTCAAAAAACGGCAAATAGCTGAAAAACTAGGAATTTTCACAAAAATTATGTTGATGCAAAAAAAGTATATTTTACACCATCCAAGATTTTCAAAGTGATCGAAAACTTGACAGCCGAGCTCCAGACGCCTGAAAATGATCAAACTGGTCAAAAACTAACTGAAAATTGAAAAAATTCAAGTCCGGCAGCGATATTGGCGTCTTGCGCCTTTAAACATTTCAAGATTTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAAAGTGGTATATGGGTTAAA</pcr_primer_p1>
		<pcr_primer_p2>GCTTCCTCTGACTGTTGCTA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAAGAAAGTGGTATATGGGTTAAACGGGAAACGGGTCCCCCCCCCCCCCCCCATCTTCGTGTAATTCCTCAAACATCAAACATGTCGTACAAAGCCGAAATGACAGAATGCTTTTGGTTATTGGCTCAAAATGGCACAATTATGCTAATCCTTTTCAAGTAGAGTAGTTGACTTGAATCGAGACCTCGAGGTGTTTGGAAAGTGAAGGATCTGTAGTGTGATCAGGGTTACTGTAGCAACAGTCAGAGGAAGC</canonical_amplicon>
		<polymorphic_amplicon>AAAGAAAGTGGTATATGGGTTAAACGGGAAACGGGTCCCCCCCCCCCCCCCCATCTTCGTGTAATTCCTCAAACATCAAACATGTCGTACAAAGCCGAAATGACAGAATGCTTTTGGTTATTGGCTCAAAATGGCACAATTATGCTAATCCTTTTCAAGTAGAGTAGTTGACTTGAATCGAGACCTCGAGGTGTTTGRAAAGTGAAGGATCTGTAGTGTGATCAGGGTTACTGTAGCAACAGTCAGAGGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31061</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>483693</contig_pos>
        <strand></strand>
        <context>attttcaaaa[A/G]ttttaaattC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGCTGTTGTACTTTTTGTTGGAGCTCCTGAAATATTAAAATTTTCAAAA</left_flank>
        <right_flank>TTTTAAATTCACAGTACCGGGTAATAGGACATACAAAAACGAATTTTCAG</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGGATATCATACGCATCGAAATTTGATGTGGCTACATGATTGTCGTATCCGGTTTTCATGGCGTTGAATAGAATCAAACTGCAACATTTTGAACCTGAAAATACAAATTTCAAAGAGAGAACAAATTGTTTGTTACCTGTCCTTGCTTCTGTACAATGTGAGCCTACAGGATATCCTGCTCGCTCTCCAGATCGTTCTAATTGAAGTGGGATGTGCCACGGAGCCTCGTTTTCAAACATTGTCTCATTCGAGCCTAATGGTTCTTTGTTGGAAGTGGCTGCTAACTCCATTTCATCTTCTTTCTCATCAATATCATACTGTTTTGGGGTGGAGTAGGCCAAGATATAAAATCCTTTGTTTTCAAACTTGCAAAATGTGTCACCGCCGTTATATGAGGAAACCACAAAGTCGGAACGCGAAACGATGACTTCGTAAGACTTTTTGAAACGCTGTTGTACTTTTTGTTGGAGCTCCTGAAATATTAAAATTTTCAAAAATTTTAAATTCACAGTACCGGGTAATAGGACATACAAAAACGAATTTTCAGTTGATTTTCAGCCATTTTGATCATTTTCAATAGACTGGGGCTTGGATGTCTGCTTTTCGATCACTTCAAAATTTTTGAAAAATGTGAAACAGATCTAGATTGAAAATTTTGGATTCACAGAATTTTTTGAAAATTTTCCGTTTTTCAGATATTAGTCAATTTGTGAGTGACACTTTTTCTTGGGAAATAATTCTGGGTACAACGGGGTAAAAGTGATCACCGCCAAATTGGCAATTTATCTTTAAATGAGTCAAAAATTCATTGAGGTCGAAAAACTCAACTCTGCGGTACGAAAAATGAAATTCTTCGGAGAATTTTTTTGAAAATGCAATTTACTCAGGCAAATTTAGTGATTGGAAGGATTGGAAATCACTAATTGTATATTACTAAATCAGTTGCCGGCAAATAACTAAAAAATAGAGAATAACGAAAAATCTGTAGATGCCTTTT</canonical>
            <polymorphic>TTTCGGATATCATACGCATCGAAATTTGATGTGGCTACATGATTGTCGTATCCGGTTTTCATGGCGTTGAATAGAATCAAACTGCAACATTTTGAACCTGAAAATACAAATTTCAAAGAGAGAACAAATTGTTTGTTACCTGTCCTTGCTTCTGTACAATGTGAGCCTACAGGATATCCTGCTCGCTCTCCAGATCGTTCTAATTGAAGTGGGATGTGCCACGGAGCCTCGTTTTCAAACATTGTCTCATTCGAGCCTAATGGTTCTTTGTTGGAAGTGGCTGCTAACTCCATTTCATCTTCTTTCTCATCAATATCATACTGTTTTGGGGTGGAGTAGGCCAAGATATAAAATCCTTTGTTTTCAAACTTGCAAAATGTGTCACCGCCGTTATATGAGGAAACCACAAAGTCGGAACGCGAAACGATGACTTCGTAAGACTTTTTGAAACGCTGTTGTACTTTTTGTTGGAGCTCCTGAAATATTAAAATTTTCAAAARTTTTAAATTCACAGTACCGGGTAATAGGACATACAAAAACGAATTTTCAGTTGATTTTCAGCCATTTTGATCATTTTCAATAGACTGGGGCTTGGATGTCTGCTTTTCGATCACTTCAAAATTTTTGAAAAATGTGAAACAGATCTAGATTGAAAATTTTGGATTCACAGAATTTTTTGAAAATTTTCCGTTTTTCAGATATTAGTCAATTTGTGAGTGACACTTTTTCTTGGGAAATAATTCTGGGTACAACGGGGTAAAAGTGATCACCGCCAAATTGGCAATTTATCTTTAAATGAGTCAAAAATTCATTGAGGTCGAAAAACTCAACTCTGCGGTACGAAAAATGAAATTCTTCGGAGAATTTTTTTGAAAATGCAATTTACTCAGGCAAATTTAGTGATTGGAAGGATTGGAAATCACTAATTGTATATTACTAAATCAGTTGCCGGCAAATAACTAAAAAATAGAGAATAACGAAAAATCTGTAGATGCCTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>380 124 107 86 78 45 36 35 31 22 16 12 11 10 7</canonical_bands>
                <polymorphic_bands>380 124 107 86 78 45 36 35 31 22 17 16 12 11</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>287 86 78 76 75 45 37 36 35 31 31 26 23 22 18 17 16 14 12 11 10 7 7</canonical_bands>
                <polymorphic_bands>287 86 78 76 75 45 37 36 35 31 31 26 23 22 18 17 17 16 14 12 11 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGCTGTTGTACTTTTTGTTG</pcr_primer_p1>
		<pcr_primer_p2>ATCACTAAATTTGCCTGAGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>455</pcr_amplicon_size>
		<canonical_amplicon>ACGCTGTTGTACTTTTTGTTGGAGCTCCTGAAATATTAAAATTTTCAAAAATTTTAAATTCACAGTACCGGGTAATAGGACATACAAAAACGAATTTTCAGTTGATTTTCAGCCATTTTGATCATTTTCAATAGACTGGGGCTTGGATGTCTGCTTTTCGATCACTTCAAAATTTTTGAAAAATGTGAAACAGATCTAGATTGAAAATTTTGGATTCACAGAATTTTTTGAAAATTTTCCGTTTTTCAGATATTAGTCAATTTGTGAGTGACACTTTTTCTTGGGAAATAATTCTGGGTACAACGGGGTAAAAGTGATCACCGCCAAATTGGCAATTTATCTTTAAATGAGTCAAAAATTCATTGAGGTCGAAAAACTCAACTCTGCGGTACGAAAAATGAAATTCTTCGGAGAATTTTTTTGAAAATGCAATTTACTCAGGCAAATTTAGTGAT</canonical_amplicon>
		<polymorphic_amplicon>ACGCTGTTGTACTTTTTGTTGGAGCTCCTGAAATATTAAAATTTTCAAAARTTTTAAATTCACAGTACCGGGTAATAGGACATACAAAAACGAATTTTCAGTTGATTTTCAGCCATTTTGATCATTTTCAATAGACTGGGGCTTGGATGTCTGCTTTTCGATCACTTCAAAATTTTTGAAAAATGTGAAACAGATCTAGATTGAAAATTTTGGATTCACAGAATTTTTTGAAAATTTTCCGTTTTTCAGATATTAGTCAATTTGTGAGTGACACTTTTTCTTGGGAAATAATTCTGGGTACAACGGGGTAAAAGTGATCACCGCCAAATTGGCAATTTATCTTTAAATGAGTCAAAAATTCATTGAGGTCGAAAAACTCAACTCTGCGGTACGAAAAATGAAATTCTTCGGAGAATTTTTTTGAAAATGCAATTTACTCAGGCAAATTTAGTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31062</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>483805</contig_pos>
        <strand></strand>
        <context>gcttttcgat[C/A]acttcaaaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CCATTTTGATCATTTTCAATAGACTGGGGCTTGGATGTCTGCTTTTCGAT</left_flank>
        <right_flank>ACTTCAAAATTTTTGAAAAATGTGAAACAGATCTAGATTGAAAATTTTGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAAGAGAGAACAAATTGTTTGTTACCTGTCCTTGCTTCTGTACAATGTGAGCCTACAGGATATCCTGCTCGCTCTCCAGATCGTTCTAATTGAAGTGGGATGTGCCACGGAGCCTCGTTTTCAAACATTGTCTCATTCGAGCCTAATGGTTCTTTGTTGGAAGTGGCTGCTAACTCCATTTCATCTTCTTTCTCATCAATATCATACTGTTTTGGGGTGGAGTAGGCCAAGATATAAAATCCTTTGTTTTCAAACTTGCAAAATGTGTCACCGCCGTTATATGAGGAAACCACAAAGTCGGAACGCGAAACGATGACTTCGTAAGACTTTTTGAAACGCTGTTGTACTTTTTGTTGGAGCTCCTGAAATATTAAAATTTTCAAAAATTTTAAATTCACAGTACCGGGTAATAGGACATACAAAAACGAATTTTCAGTTGATTTTCAGCCATTTTGATCATTTTCAATAGACTGGGGCTTGGATGTCTGCTTTTCGATCACTTCAAAATTTTTGAAAAATGTGAAACAGATCTAGATTGAAAATTTTGGATTCACAGAATTTTTTGAAAATTTTCCGTTTTTCAGATATTAGTCAATTTGTGAGTGACACTTTTTCTTGGGAAATAATTCTGGGTACAACGGGGTAAAAGTGATCACCGCCAAATTGGCAATTTATCTTTAAATGAGTCAAAAATTCATTGAGGTCGAAAAACTCAACTCTGCGGTACGAAAAATGAAATTCTTCGGAGAATTTTTTTGAAAATGCAATTTACTCAGGCAAATTTAGTGATTGGAAGGATTGGAAATCACTAATTGTATATTACTAAATCAGTTGCCGGCAAATAACTAAAAAATAGAGAATAACGAAAAATCTGTAGATGCCTTTTCTGAGCGGTCGGAAACTTGACAGCCGAACTCTCGACTTCTGACAATGGTCAAAATAGCCGCAAATCCACCAAATTAACCGGTACTGTATAAATTCTTTACCGATGCAATAAT</canonical>
            <polymorphic>TCAAAGAGAGAACAAATTGTTTGTTACCTGTCCTTGCTTCTGTACAATGTGAGCCTACAGGATATCCTGCTCGCTCTCCAGATCGTTCTAATTGAAGTGGGATGTGCCACGGAGCCTCGTTTTCAAACATTGTCTCATTCGAGCCTAATGGTTCTTTGTTGGAAGTGGCTGCTAACTCCATTTCATCTTCTTTCTCATCAATATCATACTGTTTTGGGGTGGAGTAGGCCAAGATATAAAATCCTTTGTTTTCAAACTTGCAAAATGTGTCACCGCCGTTATATGAGGAAACCACAAAGTCGGAACGCGAAACGATGACTTCGTAAGACTTTTTGAAACGCTGTTGTACTTTTTGTTGGAGCTCCTGAAATATTAAAATTTTCAAAAATTTTAAATTCACAGTACCGGGTAATAGGACATACAAAAACGAATTTTCAGTTGATTTTCAGCCATTTTGATCATTTTCAATAGACTGGGGCTTGGATGTCTGCTTTTCGATMACTTCAAAATTTTTGAAAAATGTGAAACAGATCTAGATTGAAAATTTTGGATTCACAGAATTTTTTGAAAATTTTCCGTTTTTCAGATATTAGTCAATTTGTGAGTGACACTTTTTCTTGGGAAATAATTCTGGGTACAACGGGGTAAAAGTGATCACCGCCAAATTGGCAATTTATCTTTAAATGAGTCAAAAATTCATTGAGGTCGAAAAACTCAACTCTGCGGTACGAAAAATGAAATTCTTCGGAGAATTTTTTTGAAAATGCAATTTACTCAGGCAAATTTAGTGATTGGAAGGATTGGAAATCACTAATTGTATATTACTAAATCAGTTGCCGGCAAATAACTAAAAAATAGAGAATAACGAAAAATCTGTAGATGCCTTTTCTGAGCGGTCGGAAACTTGACAGCCGAACTCTCGACTTCTGACAATGGTCAAAATAGCCGCAAATCCACCAAATTAACCGGTACTGTATAAATTCTTTACCGATGCAATAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>376 348 123 80 40 33</canonical_bands>
                <polymorphic_bands>376 348 123 80 73</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>146 133 105 102 58 54 51 48 48 48 44 43 31 23 22 20 7 4 4 3 3 3</canonical_bands>
                <polymorphic_bands>146 133 125 105 58 54 51 48 48 48 44 43 31 22 20 7 4 4 3 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGCTGTTGTACTTTTTGTTG</pcr_primer_p1>
		<pcr_primer_p2>ATCACTAAATTTGCCTGAGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>455</pcr_amplicon_size>
		<canonical_amplicon>ACGCTGTTGTACTTTTTGTTGGAGCTCCTGAAATATTAAAATTTTCAAAAATTTTAAATTCACAGTACCGGGTAATAGGACATACAAAAACGAATTTTCAGTTGATTTTCAGCCATTTTGATCATTTTCAATAGACTGGGGCTTGGATGTCTGCTTTTCGATCACTTCAAAATTTTTGAAAAATGTGAAACAGATCTAGATTGAAAATTTTGGATTCACAGAATTTTTTGAAAATTTTCCGTTTTTCAGATATTAGTCAATTTGTGAGTGACACTTTTTCTTGGGAAATAATTCTGGGTACAACGGGGTAAAAGTGATCACCGCCAAATTGGCAATTTATCTTTAAATGAGTCAAAAATTCATTGAGGTCGAAAAACTCAACTCTGCGGTACGAAAAATGAAATTCTTCGGAGAATTTTTTTGAAAATGCAATTTACTCAGGCAAATTTAGTGAT</canonical_amplicon>
		<polymorphic_amplicon>ACGCTGTTGTACTTTTTGTTGGAGCTCCTGAAATATTAAAATTTTCAAAAATTTTAAATTCACAGTACCGGGTAATAGGACATACAAAAACGAATTTTCAGTTGATTTTCAGCCATTTTGATCATTTTCAATAGACTGGGGCTTGGATGTCTGCTTTTCGATMACTTCAAAATTTTTGAAAAATGTGAAACAGATCTAGATTGAAAATTTTGGATTCACAGAATTTTTTGAAAATTTTCCGTTTTTCAGATATTAGTCAATTTGTGAGTGACACTTTTTCTTGGGAAATAATTCTGGGTACAACGGGGTAAAAGTGATCACCGCCAAATTGGCAATTTATCTTTAAATGAGTCAAAAATTCATTGAGGTCGAAAAACTCAACTCTGCGGTACGAAAAATGAAATTCTTCGGAGAATTTTTTTGAAAATGCAATTTACTCAGGCAAATTTAGTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31063</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>483863</contig_pos>
        <strand></strand>
        <context>tggattcaca[G/T]aattttttga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTTTTGAAAAATGTGAAACAGATCTAGATTGAAAATTTTGGATTCACA</left_flank>
        <right_flank>AATTTTTTGAAAATTTTCCGTTTTTCAGATATTAGTCAATTTGTGAGTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGATATCCTGCTCGCTCTCCAGATCGTTCTAATTGAAGTGGGATGTGCCACGGAGCCTCGTTTTCAAACATTGTCTCATTCGAGCCTAATGGTTCTTTGTTGGAAGTGGCTGCTAACTCCATTTCATCTTCTTTCTCATCAATATCATACTGTTTTGGGGTGGAGTAGGCCAAGATATAAAATCCTTTGTTTTCAAACTTGCAAAATGTGTCACCGCCGTTATATGAGGAAACCACAAAGTCGGAACGCGAAACGATGACTTCGTAAGACTTTTTGAAACGCTGTTGTACTTTTTGTTGGAGCTCCTGAAATATTAAAATTTTCAAAAATTTTAAATTCACAGTACCGGGTAATAGGACATACAAAAACGAATTTTCAGTTGATTTTCAGCCATTTTGATCATTTTCAATAGACTGGGGCTTGGATGTCTGCTTTTCGATCACTTCAAAATTTTTGAAAAATGTGAAACAGATCTAGATTGAAAATTTTGGATTCACAGAATTTTTTGAAAATTTTCCGTTTTTCAGATATTAGTCAATTTGTGAGTGACACTTTTTCTTGGGAAATAATTCTGGGTACAACGGGGTAAAAGTGATCACCGCCAAATTGGCAATTTATCTTTAAATGAGTCAAAAATTCATTGAGGTCGAAAAACTCAACTCTGCGGTACGAAAAATGAAATTCTTCGGAGAATTTTTTTGAAAATGCAATTTACTCAGGCAAATTTAGTGATTGGAAGGATTGGAAATCACTAATTGTATATTACTAAATCAGTTGCCGGCAAATAACTAAAAAATAGAGAATAACGAAAAATCTGTAGATGCCTTTTCTGAGCGGTCGGAAACTTGACAGCCGAACTCTCGACTTCTGACAATGGTCAAAATAGCCGCAAATCCACCAAATTAACCGGTACTGTATAAATTCTTTACCGATGCAATAATCCCCTCTTTTCCTTTTCCAAAGTCCGGAGACGTGGCCATATGTCGCATCGCATCTCTC</canonical>
            <polymorphic>AGGATATCCTGCTCGCTCTCCAGATCGTTCTAATTGAAGTGGGATGTGCCACGGAGCCTCGTTTTCAAACATTGTCTCATTCGAGCCTAATGGTTCTTTGTTGGAAGTGGCTGCTAACTCCATTTCATCTTCTTTCTCATCAATATCATACTGTTTTGGGGTGGAGTAGGCCAAGATATAAAATCCTTTGTTTTCAAACTTGCAAAATGTGTCACCGCCGTTATATGAGGAAACCACAAAGTCGGAACGCGAAACGATGACTTCGTAAGACTTTTTGAAACGCTGTTGTACTTTTTGTTGGAGCTCCTGAAATATTAAAATTTTCAAAAATTTTAAATTCACAGTACCGGGTAATAGGACATACAAAAACGAATTTTCAGTTGATTTTCAGCCATTTTGATCATTTTCAATAGACTGGGGCTTGGATGTCTGCTTTTCGATCACTTCAAAATTTTTGAAAAATGTGAAACAGATCTAGATTGAAAATTTTGGATTCACAKAATTTTTTGAAAATTTTCCGTTTTTCAGATATTAGTCAATTTGTGAGTGACACTTTTTCTTGGGAAATAATTCTGGGTACAACGGGGTAAAAGTGATCACCGCCAAATTGGCAATTTATCTTTAAATGAGTCAAAAATTCATTGAGGTCGAAAAACTCAACTCTGCGGTACGAAAAATGAAATTCTTCGGAGAATTTTTTTGAAAATGCAATTTACTCAGGCAAATTTAGTGATTGGAAGGATTGGAAATCACTAATTGTATATTACTAAATCAGTTGCCGGCAAATAACTAAAAAATAGAGAATAACGAAAAATCTGTAGATGCCTTTTCTGAGCGGTCGGAAACTTGACAGCCGAACTCTCGACTTCTGACAATGGTCAAAATAGCCGCAAATCCACCAAATTAACCGGTACTGTATAAATTCTTTACCGATGCAATAATCCCCTCTTTTCCTTTTCCAAAGTCCGGAGACGTGGCCATATGTCGCATCGCATCTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>318 197 124 80 78 45 36 35 31 16 12 11 10 7</canonical_bands>
                <polymorphic_bands>318 197 124 80 78 45 36 35 31 27 12 10 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGCTGTTGTACTTTTTGTTG</pcr_primer_p1>
		<pcr_primer_p2>ATCACTAAATTTGCCTGAGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>455</pcr_amplicon_size>
		<canonical_amplicon>ACGCTGTTGTACTTTTTGTTGGAGCTCCTGAAATATTAAAATTTTCAAAAATTTTAAATTCACAGTACCGGGTAATAGGACATACAAAAACGAATTTTCAGTTGATTTTCAGCCATTTTGATCATTTTCAATAGACTGGGGCTTGGATGTCTGCTTTTCGATCACTTCAAAATTTTTGAAAAATGTGAAACAGATCTAGATTGAAAATTTTGGATTCACAGAATTTTTTGAAAATTTTCCGTTTTTCAGATATTAGTCAATTTGTGAGTGACACTTTTTCTTGGGAAATAATTCTGGGTACAACGGGGTAAAAGTGATCACCGCCAAATTGGCAATTTATCTTTAAATGAGTCAAAAATTCATTGAGGTCGAAAAACTCAACTCTGCGGTACGAAAAATGAAATTCTTCGGAGAATTTTTTTGAAAATGCAATTTACTCAGGCAAATTTAGTGAT</canonical_amplicon>
		<polymorphic_amplicon>ACGCTGTTGTACTTTTTGTTGGAGCTCCTGAAATATTAAAATTTTCAAAAATTTTAAATTCACAGTACCGGGTAATAGGACATACAAAAACGAATTTTCAGTTGATTTTCAGCCATTTTGATCATTTTCAATAGACTGGGGCTTGGATGTCTGCTTTTCGATCACTTCAAAATTTTTGAAAAATGTGAAACAGATCTAGATTGAAAATTTTGGATTCACAKAATTTTTTGAAAATTTTCCGTTTTTCAGATATTAGTCAATTTGTGAGTGACACTTTTTCTTGGGAAATAATTCTGGGTACAACGGGGTAAAAGTGATCACCGCCAAATTGGCAATTTATCTTTAAATGAGTCAAAAATTCATTGAGGTCGAAAAACTCAACTCTGCGGTACGAAAAATGAAATTCTTCGGAGAATTTTTTTGAAAATGCAATTTACTCAGGCAAATTTAGTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31064</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>483891</contig_pos>
        <strand>+</strand>
        <context>ccgtttttca[A/C]atattagtca</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATTGAAAATTTTGGATTCACAGAATTTTTTGAAAATTTTCCGTTTTTCA</left_flank>
        <right_flank>ATATTAGTCAATTTGTGAGTGACACTTTTTCTTGGGAAATAATTCTGGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTAATTGAAGTGGGATGTGCCACGGAGCCTCGTTTTCAAACATTGTCTCATTCGAGCCTAATGGTTCTTTGTTGGAAGTGGCTGCTAACTCCATTTCATCTTCTTTCTCATCAATATCATACTGTTTTGGGGTGGAGTAGGCCAAGATATAAAATCCTTTGTTTTCAAACTTGCAAAATGTGTCACCGCCGTTATATGAGGAAACCACAAAGTCGGAACGCGAAACGATGACTTCGTAAGACTTTTTGAAACGCTGTTGTACTTTTTGTTGGAGCTCCTGAAATATTAAAATTTTCAAAAATTTTAAATTCACAGTACCGGGTAATAGGACATACAAAAACGAATTTTCAGTTGATTTTCAGCCATTTTGATCATTTTCAATAGACTGGGGCTTGGATGTCTGCTTTTCGATCACTTCAAAATTTTTGAAAAATGTGAAACAGATCTAGATTGAAAATTTTGGATTCACAGAATTTTTTGAAAATTTTCCGTTTTTCAGATATTAGTCAATTTGTGAGTGACACTTTTTCTTGGGAAATAATTCTGGGTACAACGGGGTAAAAGTGATCACCGCCAAATTGGCAATTTATCTTTAAATGAGTCAAAAATTCATTGAGGTCGAAAAACTCAACTCTGCGGTACGAAAAATGAAATTCTTCGGAGAATTTTTTTGAAAATGCAATTTACTCAGGCAAATTTAGTGATTGGAAGGATTGGAAATCACTAATTGTATATTACTAAATCAGTTGCCGGCAAATAACTAAAAAATAGAGAATAACGAAAAATCTGTAGATGCCTTTTCTGAGCGGTCGGAAACTTGACAGCCGAACTCTCGACTTCTGACAATGGTCAAAATAGCCGCAAATCCACCAAATTAACCGGTACTGTATAAATTCTTTACCGATGCAATAATCCCCTCTTTTCCTTTTCCAAAGTCCGGAGACGTGGCCATATGTCGCATCGCATCTCTCATCGTTGAAGCTAGTCGTCCGTCGCAAC</canonical>
            <polymorphic>TCTAATTGAAGTGGGATGTGCCACGGAGCCTCGTTTTCAAACATTGTCTCATTCGAGCCTAATGGTTCTTTGTTGGAAGTGGCTGCTAACTCCATTTCATCTTCTTTCTCATCAATATCATACTGTTTTGGGGTGGAGTAGGCCAAGATATAAAATCCTTTGTTTTCAAACTTGCAAAATGTGTCACCGCCGTTATATGAGGAAACCACAAAGTCGGAACGCGAAACGATGACTTCGTAAGACTTTTTGAAACGCTGTTGTACTTTTTGTTGGAGCTCCTGAAATATTAAAATTTTCAAAAATTTTAAATTCACAGTACCGGGTAATAGGACATACAAAAACGAATTTTCAGTTGATTTTCAGCCATTTTGATCATTTTCAATAGACTGGGGCTTGGATGTCTGCTTTTCGATCACTTCAAAATTTTTGAAAAATGTGAAACAGATCTAGATTGAAAATTTTGGATTCACAGAATTTTTTGAAAATTTTCCGTTTTTCAMATATTAGTCAATTTGTGAGTGACACTTTTTCTTGGGAAATAATTCTGGGTACAACGGGGTAAAAGTGATCACCGCCAAATTGGCAATTTATCTTTAAATGAGTCAAAAATTCATTGAGGTCGAAAAACTCAACTCTGCGGTACGAAAAATGAAATTCTTCGGAGAATTTTTTTGAAAATGCAATTTACTCAGGCAAATTTAGTGATTGGAAGGATTGGAAATCACTAATTGTATATTACTAAATCAGTTGCCGGCAAATAACTAAAAAATAGAGAATAACGAAAAATCTGTAGATGCCTTTTCTGAGCGGTCGGAAACTTGACAGCCGAACTCTCGACTTCTGACAATGGTCAAAATAGCCGCAAATCCACCAAATTAACCGGTACTGTATAAATTCTTTACCGATGCAATAATCCCCTCTTTTCCTTTTCCAAAGTCCGGAGACGTGGCCATATGTCGCATCGCATCTCTCATCGTTGAAGCTAGTCGTCCGTCGCAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>283 216 162 158 143 29 9</canonical_bands>
                <polymorphic_bands>445 216 158 143 29 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGCTGTTGTACTTTTTGTTG</pcr_primer_p1>
		<pcr_primer_p2>ATCACTAAATTTGCCTGAGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>455</pcr_amplicon_size>
		<canonical_amplicon>ACGCTGTTGTACTTTTTGTTGGAGCTCCTGAAATATTAAAATTTTCAAAAATTTTAAATTCACAGTACCGGGTAATAGGACATACAAAAACGAATTTTCAGTTGATTTTCAGCCATTTTGATCATTTTCAATAGACTGGGGCTTGGATGTCTGCTTTTCGATCACTTCAAAATTTTTGAAAAATGTGAAACAGATCTAGATTGAAAATTTTGGATTCACAGAATTTTTTGAAAATTTTCCGTTTTTCAGATATTAGTCAATTTGTGAGTGACACTTTTTCTTGGGAAATAATTCTGGGTACAACGGGGTAAAAGTGATCACCGCCAAATTGGCAATTTATCTTTAAATGAGTCAAAAATTCATTGAGGTCGAAAAACTCAACTCTGCGGTACGAAAAATGAAATTCTTCGGAGAATTTTTTTGAAAATGCAATTTACTCAGGCAAATTTAGTGAT</canonical_amplicon>
		<polymorphic_amplicon>ACGCTGTTGTACTTTTTGTTGGAGCTCCTGAAATATTAAAATTTTCAAAAATTTTAAATTCACAGTACCGGGTAATAGGACATACAAAAACGAATTTTCAGTTGATTTTCAGCCATTTTGATCATTTTCAATAGACTGGGGCTTGGATGTCTGCTTTTCGATCACTTCAAAATTTTTGAAAAATGTGAAACAGATCTAGATTGAAAATTTTGGATTCACAGAATTTTTTGAAAATTTTCCGTTTTTCAMATATTAGTCAATTTGTGAGTGACACTTTTTCTTGGGAAATAATTCTGGGTACAACGGGGTAAAAGTGATCACCGCCAAATTGGCAATTTATCTTTAAATGAGTCAAAAATTCATTGAGGTCGAAAAACTCAACTCTGCGGTACGAAAAATGAAATTCTTCGGAGAATTTTTTTGAAAATGCAATTTACTCAGGCAAATTTAGTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31065</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>483929</contig_pos>
        <strand></strand>
        <context>tttcttggGA[A/C]ATAATTCTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCCGTTTTTCAGATATTAGTCAATTTGTGAGTGACACTTTTTCTTGGGA</left_flank>
        <right_flank>ATAATTCTGGGTACAACGGGGTAAAAGTGATCACCGCCAAATTGGCAATT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACATTGTCTCATTCGAGCCTAATGGTTCTTTGTTGGAAGTGGCTGCTAACTCCATTTCATCTTCTTTCTCATCAATATCATACTGTTTTGGGGTGGAGTAGGCCAAGATATAAAATCCTTTGTTTTCAAACTTGCAAAATGTGTCACCGCCGTTATATGAGGAAACCACAAAGTCGGAACGCGAAACGATGACTTCGTAAGACTTTTTGAAACGCTGTTGTACTTTTTGTTGGAGCTCCTGAAATATTAAAATTTTCAAAAATTTTAAATTCACAGTACCGGGTAATAGGACATACAAAAACGAATTTTCAGTTGATTTTCAGCCATTTTGATCATTTTCAATAGACTGGGGCTTGGATGTCTGCTTTTCGATCACTTCAAAATTTTTGAAAAATGTGAAACAGATCTAGATTGAAAATTTTGGATTCACAGAATTTTTTGAAAATTTTCCGTTTTTCAGATATTAGTCAATTTGTGAGTGACACTTTTTCTTGGGAAATAATTCTGGGTACAACGGGGTAAAAGTGATCACCGCCAAATTGGCAATTTATCTTTAAATGAGTCAAAAATTCATTGAGGTCGAAAAACTCAACTCTGCGGTACGAAAAATGAAATTCTTCGGAGAATTTTTTTGAAAATGCAATTTACTCAGGCAAATTTAGTGATTGGAAGGATTGGAAATCACTAATTGTATATTACTAAATCAGTTGCCGGCAAATAACTAAAAAATAGAGAATAACGAAAAATCTGTAGATGCCTTTTCTGAGCGGTCGGAAACTTGACAGCCGAACTCTCGACTTCTGACAATGGTCAAAATAGCCGCAAATCCACCAAATTAACCGGTACTGTATAAATTCTTTACCGATGCAATAATCCCCTCTTTTCCTTTTCCAAAGTCCGGAGACGTGGCCATATGTCGCATCGCATCTCTCATCGTTGAAGCTAGTCGTCCGTCGCAACATTTATTTCCTAAACAAGAAACAGATACAGAATCAGGT</canonical>
            <polymorphic>AAACATTGTCTCATTCGAGCCTAATGGTTCTTTGTTGGAAGTGGCTGCTAACTCCATTTCATCTTCTTTCTCATCAATATCATACTGTTTTGGGGTGGAGTAGGCCAAGATATAAAATCCTTTGTTTTCAAACTTGCAAAATGTGTCACCGCCGTTATATGAGGAAACCACAAAGTCGGAACGCGAAACGATGACTTCGTAAGACTTTTTGAAACGCTGTTGTACTTTTTGTTGGAGCTCCTGAAATATTAAAATTTTCAAAAATTTTAAATTCACAGTACCGGGTAATAGGACATACAAAAACGAATTTTCAGTTGATTTTCAGCCATTTTGATCATTTTCAATAGACTGGGGCTTGGATGTCTGCTTTTCGATCACTTCAAAATTTTTGAAAAATGTGAAACAGATCTAGATTGAAAATTTTGGATTCACAGAATTTTTTGAAAATTTTCCGTTTTTCAGATATTAGTCAATTTGTGAGTGACACTTTTTCTTGGGAMATAATTCTGGGTACAACGGGGTAAAAGTGATCACCGCCAAATTGGCAATTTATCTTTAAATGAGTCAAAAATTCATTGAGGTCGAAAAACTCAACTCTGCGGTACGAAAAATGAAATTCTTCGGAGAATTTTTTTGAAAATGCAATTTACTCAGGCAAATTTAGTGATTGGAAGGATTGGAAATCACTAATTGTATATTACTAAATCAGTTGCCGGCAAATAACTAAAAAATAGAGAATAACGAAAAATCTGTAGATGCCTTTTCTGAGCGGTCGGAAACTTGACAGCCGAACTCTCGACTTCTGACAATGGTCAAAATAGCCGCAAATCCACCAAATTAACCGGTACTGTATAAATTCTTTACCGATGCAATAATCCCCTCTTTTCCTTTTCCAAAGTCCGGAGACGTGGCCATATGTCGCATCGCATCTCTCATCGTTGAAGCTAGTCGTCCGTCGCAACATTTATTTCCTAAACAAGAAACAGATACAGAATCAGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>447 383 115 55</canonical_bands>
                <polymorphic_bands>447 383 170</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGCTGTTGTACTTTTTGTTG</pcr_primer_p1>
		<pcr_primer_p2>ATCACTAAATTTGCCTGAGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>455</pcr_amplicon_size>
		<canonical_amplicon>ACGCTGTTGTACTTTTTGTTGGAGCTCCTGAAATATTAAAATTTTCAAAAATTTTAAATTCACAGTACCGGGTAATAGGACATACAAAAACGAATTTTCAGTTGATTTTCAGCCATTTTGATCATTTTCAATAGACTGGGGCTTGGATGTCTGCTTTTCGATCACTTCAAAATTTTTGAAAAATGTGAAACAGATCTAGATTGAAAATTTTGGATTCACAGAATTTTTTGAAAATTTTCCGTTTTTCAGATATTAGTCAATTTGTGAGTGACACTTTTTCTTGGGAAATAATTCTGGGTACAACGGGGTAAAAGTGATCACCGCCAAATTGGCAATTTATCTTTAAATGAGTCAAAAATTCATTGAGGTCGAAAAACTCAACTCTGCGGTACGAAAAATGAAATTCTTCGGAGAATTTTTTTGAAAATGCAATTTACTCAGGCAAATTTAGTGAT</canonical_amplicon>
		<polymorphic_amplicon>ACGCTGTTGTACTTTTTGTTGGAGCTCCTGAAATATTAAAATTTTCAAAAATTTTAAATTCACAGTACCGGGTAATAGGACATACAAAAACGAATTTTCAGTTGATTTTCAGCCATTTTGATCATTTTCAATAGACTGGGGCTTGGATGTCTGCTTTTCGATCACTTCAAAATTTTTGAAAAATGTGAAACAGATCTAGATTGAAAATTTTGGATTCACAGAATTTTTTGAAAATTTTCCGTTTTTCAGATATTAGTCAATTTGTGAGTGACACTTTTTCTTGGGAMATAATTCTGGGTACAACGGGGTAAAAGTGATCACCGCCAAATTGGCAATTTATCTTTAAATGAGTCAAAAATTCATTGAGGTCGAAAAACTCAACTCTGCGGTACGAAAAATGAAATTCTTCGGAGAATTTTTTTGAAAATGCAATTTACTCAGGCAAATTTAGTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31066</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>484004</contig_pos>
        <strand></strand>
        <context>tcaaaaattc[A/G]ttgaggtcga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTGATCACCGCCAAATTGGCAATTTATCTTTAAATGAGTCAAAAATTC</left_flank>
        <right_flank>TTGAGGTCGAAAAACTCAACTCTGCGGTACGAAAAATGAAATTCTTCGGA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATCATACTGTTTTGGGGTGGAGTAGGCCAAGATATAAAATCCTTTGTTTTCAAACTTGCAAAATGTGTCACCGCCGTTATATGAGGAAACCACAAAGTCGGAACGCGAAACGATGACTTCGTAAGACTTTTTGAAACGCTGTTGTACTTTTTGTTGGAGCTCCTGAAATATTAAAATTTTCAAAAATTTTAAATTCACAGTACCGGGTAATAGGACATACAAAAACGAATTTTCAGTTGATTTTCAGCCATTTTGATCATTTTCAATAGACTGGGGCTTGGATGTCTGCTTTTCGATCACTTCAAAATTTTTGAAAAATGTGAAACAGATCTAGATTGAAAATTTTGGATTCACAGAATTTTTTGAAAATTTTCCGTTTTTCAGATATTAGTCAATTTGTGAGTGACACTTTTTCTTGGGAAATAATTCTGGGTACAACGGGGTAAAAGTGATCACCGCCAAATTGGCAATTTATCTTTAAATGAGTCAAAAATTCATTGAGGTCGAAAAACTCAACTCTGCGGTACGAAAAATGAAATTCTTCGGAGAATTTTTTTGAAAATGCAATTTACTCAGGCAAATTTAGTGATTGGAAGGATTGGAAATCACTAATTGTATATTACTAAATCAGTTGCCGGCAAATAACTAAAAAATAGAGAATAACGAAAAATCTGTAGATGCCTTTTCTGAGCGGTCGGAAACTTGACAGCCGAACTCTCGACTTCTGACAATGGTCAAAATAGCCGCAAATCCACCAAATTAACCGGTACTGTATAAATTCTTTACCGATGCAATAATCCCCTCTTTTCCTTTTCCAAAGTCCGGAGACGTGGCCATATGTCGCATCGCATCTCTCATCGTTGAAGCTAGTCGTCCGTCGCAACATTTATTTCCTAAACAAGAAACAGATACAGAATCAGGTGTTCATTTTGTAGTTTGAAATGACGAAATCATAATGAAGATTTCTATGATTCACCACAGTCTATCGGAAGGTGAT</canonical>
            <polymorphic>AATATCATACTGTTTTGGGGTGGAGTAGGCCAAGATATAAAATCCTTTGTTTTCAAACTTGCAAAATGTGTCACCGCCGTTATATGAGGAAACCACAAAGTCGGAACGCGAAACGATGACTTCGTAAGACTTTTTGAAACGCTGTTGTACTTTTTGTTGGAGCTCCTGAAATATTAAAATTTTCAAAAATTTTAAATTCACAGTACCGGGTAATAGGACATACAAAAACGAATTTTCAGTTGATTTTCAGCCATTTTGATCATTTTCAATAGACTGGGGCTTGGATGTCTGCTTTTCGATCACTTCAAAATTTTTGAAAAATGTGAAACAGATCTAGATTGAAAATTTTGGATTCACAGAATTTTTTGAAAATTTTCCGTTTTTCAGATATTAGTCAATTTGTGAGTGACACTTTTTCTTGGGAAATAATTCTGGGTACAACGGGGTAAAAGTGATCACCGCCAAATTGGCAATTTATCTTTAAATGAGTCAAAAATTCRTTGAGGTCGAAAAACTCAACTCTGCGGTACGAAAAATGAAATTCTTCGGAGAATTTTTTTGAAAATGCAATTTACTCAGGCAAATTTAGTGATTGGAAGGATTGGAAATCACTAATTGTATATTACTAAATCAGTTGCCGGCAAATAACTAAAAAATAGAGAATAACGAAAAATCTGTAGATGCCTTTTCTGAGCGGTCGGAAACTTGACAGCCGAACTCTCGACTTCTGACAATGGTCAAAATAGCCGCAAATCCACCAAATTAACCGGTACTGTATAAATTCTTTACCGATGCAATAATCCCCTCTTTTCCTTTTCCAAAGTCCGGAGACGTGGCCATATGTCGCATCGCATCTCTCATCGTTGAAGCTAGTCGTCCGTCGCAACATTTATTTCCTAAACAAGAAACAGATACAGAATCAGGTGTTCATTTTGTAGTTTGAAATGACGAAATCATAATGAAGATTTCTATGATTCACCACAGTCTATCGGAAGGTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACAACGGGGTAAAAGTGAT</pcr_primer_p1>
		<pcr_primer_p2>GCATCTACAGATTTTTCGTTATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTACAACGGGGTAAAAGTGATCACCGCCAAATTGGCAATTTATCTTTAAATGAGTCAAAAATTCATTGAGGTCGAAAAACTCAACTCTGCGGTACGAAAAATGAAATTCTTCGGAGAATTTTTTTGAAAATGCAATTTACTCAGGCAAATTTAGTGATTGGAAGGATTGGAAATCACTAATTGTATATTACTAAATCAGTTGCCGGCAAATAACTAAAAAATAGAGAATAACGAAAAATCTGTAGATGC</canonical_amplicon>
		<polymorphic_amplicon>GTACAACGGGGTAAAAGTGATCACCGCCAAATTGGCAATTTATCTTTAAATGAGTCAAAAATTCRTTGAGGTCGAAAAACTCAACTCTGCGGTACGAAAAATGAAATTCTTCGGAGAATTTTTTTGAAAATGCAATTTACTCAGGCAAATTTAGTGATTGGAAGGATTGGAAATCACTAATTGTATATTACTAAATCAGTTGCCGGCAAATAACTAAAAAATAGAGAATAACGAAAAATCTGTAGATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31067</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>484135</contig_pos>
        <strand>+</strand>
        <context>TATTACTAAA[A/T]CAGTTGYCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAATTTAGTGATTGGAAGGATTGGAAATCACTAATTGTATATTACTAAA</left_flank>
        <right_flank>CAGTTGCCGGCAAATAACTAAAAAATAGAGAATAACGAAAAATCTGTAGA</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGAAACGCTGTTGTACTTTTTGTTGGAGCTCCTGAAATATTAAAATTTTCAAAAATTTTAAATTCACAGTACCGGGTAATAGGACATACAAAAACGAATTTTCAGTTGATTTTCAGCCATTTTGATCATTTTCAATAGACTGGGGCTTGGATGTCTGCTTTTCGATCACTTCAAAATTTTTGAAAAATGTGAAACAGATCTAGATTGAAAATTTTGGATTCACAGAATTTTTTGAAAATTTTCCGTTTTTCAGATATTAGTCAATTTGTGAGTGACACTTTTTCTTGGGAAATAATTCTGGGTACAACGGGGTAAAAGTGATCACCGCCAAATTGGCAATTTATCTTTAAATGAGTCAAAAATTCATTGAGGTCGAAAAACTCAACTCTGCGGTACGAAAAATGAAATTCTTCGGAGAATTTTTTTGAAAATGCAATTTACTCAGGCAAATTTAGTGATTGGAAGGATTGGAAATCACTAATTGTATATTACTAAATCAGTTGCCGGCAAATAACTAAAAAATAGAGAATAACGAAAAATCTGTAGATGCCTTTTCTGAGCGGTCGGAAACTTGACAGCCGAACTCTCGACTTCTGACAATGGTCAAAATAGCCGCAAATCCACCAAATTAACCGGTACTGTATAAATTCTTTACCGATGCAATAATCCCCTCTTTTCCTTTTCCAAAGTCCGGAGACGTGGCCATATGTCGCATCGCATCTCTCATCGTTGAAGCTAGTCGTCCGTCGCAACATTTATTTCCTAAACAAGAAACAGATACAGAATCAGGTGTTCATTTTGTAGTTTGAAATGACGAAATCATAATGAAGATTTCTATGATTCACCACAGTCTATCGGAAGGTGATAAAAATTGTCGCAGACAAGGATCACACCTGCCGACTTCCTGGATATGGAAAAAAATCTTATAAAAAACCAACCGTCTTTCTGTTCTTTATCACAATGCGTATTCTCAGGAAGTCGATCTTTTTCGCGCAAA</canonical>
            <polymorphic>TTTTGAAACGCTGTTGTACTTTTTGTTGGAGCTCCTGAAATATTAAAATTTTCAAAAATTTTAAATTCACAGTACCGGGTAATAGGACATACAAAAACGAATTTTCAGTTGATTTTCAGCCATTTTGATCATTTTCAATAGACTGGGGCTTGGATGTCTGCTTTTCGATCACTTCAAAATTTTTGAAAAATGTGAAACAGATCTAGATTGAAAATTTTGGATTCACAGAATTTTTTGAAAATTTTCCGTTTTTCAGATATTAGTCAATTTGTGAGTGACACTTTTTCTTGGGAAATAATTCTGGGTACAACGGGGTAAAAGTGATCACCGCCAAATTGGCAATTTATCTTTAAATGAGTCAAAAATTCATTGAGGTCGAAAAACTCAACTCTGCGGTACGAAAAATGAAATTCTTCGGAGAATTTTTTTGAAAATGCAATTTACTCAGGCAAATTTAGTGATTGGAAGGATTGGAAATCACTAATTGTATATTACTAAAWCAGTTGCCGGCAAATAACTAAAAAATAGAGAATAACGAAAAATCTGTAGATGCCTTTTCTGAGCGGTCGGAAACTTGACAGCCGAACTCTCGACTTCTGACAATGGTCAAAATAGCCGCAAATCCACCAAATTAACCGGTACTGTATAAATTCTTTACCGATGCAATAATCCCCTCTTTTCCTTTTCCAAAGTCCGGAGACGTGGCCATATGTCGCATCGCATCTCTCATCGTTGAAGCTAGTCGTCCGTCGCAACATTTATTTCCTAAACAAGAAACAGATACAGAATCAGGTGTTCATTTTGTAGTTTGAAATGACGAAATCATAATGAAGATTTCTATGATTCACCACAGTCTATCGGAAGGTGATAAAAATTGTCGCAGACAAGGATCACACCTGCCGACTTCCTGGATATGGAAAAAAATCTTATAAAAAACCAACCGTCTTTCTGTTCTTTATCACAATGCGTATTCTCAGGAAGTCGATCTTTTTCGCGCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTTACTCAGGCAAATTTAGT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGAAAAGAGGGGATTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAATTTACTCAGGCAAATTTAGTGATTGGAAGGATTGGAAATCACTAATTGTATATTACTAAATCAGTTGCCGGCAAATAACTAAAAAATAGAGAATAACGAAAAATCTGTAGATGCCTTTTCTGAGCGGTCGGAAACTTGACAGCCGAACTCTCGACTTCTGACAATGGTCAAAATAGCCGCAAATCCACCAAATTAACCGGTACTGTATAAATTCTTTACCGATGCAATAATCCCCTCTTTTCCTTTT</canonical_amplicon>
		<polymorphic_amplicon>CAATTTACTCAGGCAAATTTAGTGATTGGAAGGATTGGAAATCACTAATTGTATATTACTAAAWCAGTTGCCGGCAAATAACTAAAAAATAGAGAATAACGAAAAATCTGTAGATGCCTTTTCTGAGCGGTCGGAAACTTGACAGCCGAACTCTCGACTTCTGACAATGGTCAAAATAGCCGCAAATCCACCAAATTAACCGGTACTGTATAAATTCTTTACCGATGCAATAATCCCCTCTTTTCCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31068</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>484142</contig_pos>
        <strand>+</strand>
        <context>AAAWCAGTTG[C/T]CGGCAAATAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTGATTGGAAGGATTGGAAATCACTAATTGTATATTACTAAATCAGTTG</left_flank>
        <right_flank>CGGCAAATAACTAAAAAATAGAGAATAACGAAAAATCTGTAGATGCCTTT</right_flank>
        <qual_score>130</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGCTGTTGTACTTTTTGTTGGAGCTCCTGAAATATTAAAATTTTCAAAAATTTTAAATTCACAGTACCGGGTAATAGGACATACAAAAACGAATTTTCAGTTGATTTTCAGCCATTTTGATCATTTTCAATAGACTGGGGCTTGGATGTCTGCTTTTCGATCACTTCAAAATTTTTGAAAAATGTGAAACAGATCTAGATTGAAAATTTTGGATTCACAGAATTTTTTGAAAATTTTCCGTTTTTCAGATATTAGTCAATTTGTGAGTGACACTTTTTCTTGGGAAATAATTCTGGGTACAACGGGGTAAAAGTGATCACCGCCAAATTGGCAATTTATCTTTAAATGAGTCAAAAATTCATTGAGGTCGAAAAACTCAACTCTGCGGTACGAAAAATGAAATTCTTCGGAGAATTTTTTTGAAAATGCAATTTACTCAGGCAAATTTAGTGATTGGAAGGATTGGAAATCACTAATTGTATATTACTAAATCAGTTGCCGGCAAATAACTAAAAAATAGAGAATAACGAAAAATCTGTAGATGCCTTTTCTGAGCGGTCGGAAACTTGACAGCCGAACTCTCGACTTCTGACAATGGTCAAAATAGCCGCAAATCCACCAAATTAACCGGTACTGTATAAATTCTTTACCGATGCAATAATCCCCTCTTTTCCTTTTCCAAAGTCCGGAGACGTGGCCATATGTCGCATCGCATCTCTCATCGTTGAAGCTAGTCGTCCGTCGCAACATTTATTTCCTAAACAAGAAACAGATACAGAATCAGGTGTTCATTTTGTAGTTTGAAATGACGAAATCATAATGAAGATTTCTATGATTCACCACAGTCTATCGGAAGGTGATAAAAATTGTCGCAGACAAGGATCACACCTGCCGACTTCCTGGATATGGAAAAAAATCTTATAAAAAACCAACCGTCTTTCTGTTCTTTATCACAATGCGTATTCTCAGGAAGTCGATCTTTTTCGCGCAAATTAGCGA</canonical>
            <polymorphic>ACGCTGTTGTACTTTTTGTTGGAGCTCCTGAAATATTAAAATTTTCAAAAATTTTAAATTCACAGTACCGGGTAATAGGACATACAAAAACGAATTTTCAGTTGATTTTCAGCCATTTTGATCATTTTCAATAGACTGGGGCTTGGATGTCTGCTTTTCGATCACTTCAAAATTTTTGAAAAATGTGAAACAGATCTAGATTGAAAATTTTGGATTCACAGAATTTTTTGAAAATTTTCCGTTTTTCAGATATTAGTCAATTTGTGAGTGACACTTTTTCTTGGGAAATAATTCTGGGTACAACGGGGTAAAAGTGATCACCGCCAAATTGGCAATTTATCTTTAAATGAGTCAAAAATTCATTGAGGTCGAAAAACTCAACTCTGCGGTACGAAAAATGAAATTCTTCGGAGAATTTTTTTGAAAATGCAATTTACTCAGGCAAATTTAGTGATTGGAAGGATTGGAAATCACTAATTGTATATTACTAAATCAGTTGYCGGCAAATAACTAAAAAATAGAGAATAACGAAAAATCTGTAGATGCCTTTTCTGAGCGGTCGGAAACTTGACAGCCGAACTCTCGACTTCTGACAATGGTCAAAATAGCCGCAAATCCACCAAATTAACCGGTACTGTATAAATTCTTTACCGATGCAATAATCCCCTCTTTTCCTTTTCCAAAGTCCGGAGACGTGGCCATATGTCGCATCGCATCTCTCATCGTTGAAGCTAGTCGTCCGTCGCAACATTTATTTCCTAAACAAGAAACAGATACAGAATCAGGTGTTCATTTTGTAGTTTGAAATGACGAAATCATAATGAAGATTTCTATGATTCACCACAGTCTATCGGAAGGTGATAAAAATTGTCGCAGACAAGGATCACACCTGCCGACTTCCTGGATATGGAAAAAAATCTTATAAAAAACCAACCGTCTTTCTGTTCTTTATCACAATGCGTATTCTCAGGAAGTCGATCTTTTTCGCGCAAATTAGCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>499 372 129</canonical_bands>
                <polymorphic_bands>628 372</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>432 313 129 68 58</canonical_bands>
                <polymorphic_bands>561 313 68 58</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCCGGC</site>
                <isoschizomers>
                    <enzyme>MroNI</enzyme>
                    <enzyme>NaeI</enzyme>
                    <enzyme>NgoAIV</enzyme>
                    <enzyme>NgoMIV</enzyme>
                    <enzyme>PdiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATTTACTCAGGCAAATTTAGT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGAAAAGAGGGGATTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAATTTACTCAGGCAAATTTAGTGATTGGAAGGATTGGAAATCACTAATTGTATATTACTAAATCAGTTGCCGGCAAATAACTAAAAAATAGAGAATAACGAAAAATCTGTAGATGCCTTTTCTGAGCGGTCGGAAACTTGACAGCCGAACTCTCGACTTCTGACAATGGTCAAAATAGCCGCAAATCCACCAAATTAACCGGTACTGTATAAATTCTTTACCGATGCAATAATCCCCTCTTTTCCTTTT</canonical_amplicon>
		<polymorphic_amplicon>CAATTTACTCAGGCAAATTTAGTGATTGGAAGGATTGGAAATCACTAATTGTATATTACTAAATCAGTTGYCGGCAAATAACTAAAAAATAGAGAATAACGAAAAATCTGTAGATGCCTTTTCTGAGCGGTCGGAAACTTGACAGCCGAACTCTCGACTTCTGACAATGGTCAAAATAGCCGCAAATCCACCAAATTAACCGGTACTGTATAAATTCTTTACCGATGCAATAATCCCCTCTTTTCCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31069</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>485105</contig_pos>
        <strand>+</strand>
        <context>ACTAGAAAAA[A/G]RTGAGGGTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGGAGAGGTAATCTTCGGTTCTCATGTTGAAAGGGTCATACTAGAAAAA</left_flank>
        <right_flank>ATGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCCTATTTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTCAGGAAGTCGATCTTTTTCGCGCAAATTAGCGAAATTACGCGGGATTGGAGAGGGATTTGGAAGTTCGATCTCGGTGATATTGAGTCCGTCGGTGGCGTTGACCATGGAGTTCATTATCGAGATCTCAGTAACCGATTCCATTAGTTCATTCATTGACTGTATAGCTTCCTCTTCAGCTTTCATGATTTTCTTGGAAATCTCCTCGTCTGAATACAACAAATATCAGGAACACTGGCGGATGATAAAACTTGATAACATCAGACAAAAACTAGACTCTATGTACCTGGATCTGGCCAAGCGAATTTGTTGGGGTACTGAAGGATACTGTCAATTGGTGGTTGAATGGAAAGATCTTCACCAGCTGTTGAATCTTCTCGGATGTCGGGGAAGTCACCGCGAAGATTTGGTGGTTTCGTACTTCCGAGAGGATCGGCGGAGTCAATTGAGGAGAGGTAATCTTCGGTTCTCATGTTGAAAGGGTCATACTAGAAAAAAATGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCCTATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGA</canonical>
            <polymorphic>TTCTCAGGAAGTCGATCTTTTTCGCGCAAATTAGCGAAATTACGCGGGATTGGAGAGGGATTTGGAAGTTCGATCTCGGTGATATTGAGTCCGTCGGTGGCGTTGACCATGGAGTTCATTATCGAGATCTCAGTAACCGATTCCATTAGTTCATTCATTGACTGTATAGCTTCCTCTTCAGCTTTCATGATTTTCTTGGAAATCTCCTCGTCTGAATACAACAAATATCAGGAACACTGGCGGATGATAAAACTTGATAACATCAGACAAAAACTAGACTCTATGTACCTGGATCTGGCCAAGCGAATTTGTTGGGGTACTGAAGGATACTGTCAATTGGTGGTTGAATGGAAAGATCTTCACCAGCTGTTGAATCTTCTCGGATGTCGGGGAAGTCACCGCGAAGATTTGGTGGTTTCGTACTTCCGAGAGGATCGGCGGAGTCAATTGAGGAGAGGTAATCTTCGGTTCTCATGTTGAAAGGGTCATACTAGAAAAARATGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCCTATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACTGTCAATTGGTGGTTGA</pcr_primer_p1>
		<pcr_primer_p2>AAATACTGTGAAAGAGCCAAATA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>ATACTGTCAATTGGTGGTTGAATGGAAAGATCTTCACCAGCTGTTGAATCTTCTCGGATGTCGGGGAAGTCACCGCGAAGATTTGGTGGTTTCGTACTTCCGAGAGGATCGGCGGAGTCAATTGAGGAGAGGTAATCTTCGGTTCTCATGTTGAAAGGGTCATACTAGAAAAAAATGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCCTATTTGGCTCTTTCACAGTATTT</canonical_amplicon>
		<polymorphic_amplicon>ATACTGTCAATTGGTGGTTGAATGGAAAGATCTTCACCAGCTGTTGAATCTTCTCGGATGTCGGGGAAGTCACCGCGAAGATTTGGTGGTTTCGTACTTCCGAGAGGATCGGCGGAGTCAATTGAGGAGAGGTAATCTTCGGTTCTCATGTTGAAAGGGTCATACTAGAAAAARATGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCCTATTTGGCTCTTTCACAGTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31070</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>485106</contig_pos>
        <strand>+</strand>
        <context>CTAGAAAAAR[A/G]TGAGGGTATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGAGAGGTAATCTTCGGTTCTCATGTTGAAAGGGTCATACTAGAAAAAA</left_flank>
        <right_flank>TGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCCTATTTGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCAGGAAGTCGATCTTTTTCGCGCAAATTAGCGAAATTACGCGGGATTGGAGAGGGATTTGGAAGTTCGATCTCGGTGATATTGAGTCCGTCGGTGGCGTTGACCATGGAGTTCATTATCGAGATCTCAGTAACCGATTCCATTAGTTCATTCATTGACTGTATAGCTTCCTCTTCAGCTTTCATGATTTTCTTGGAAATCTCCTCGTCTGAATACAACAAATATCAGGAACACTGGCGGATGATAAAACTTGATAACATCAGACAAAAACTAGACTCTATGTACCTGGATCTGGCCAAGCGAATTTGTTGGGGTACTGAAGGATACTGTCAATTGGTGGTTGAATGGAAAGATCTTCACCAGCTGTTGAATCTTCTCGGATGTCGGGGAAGTCACCGCGAAGATTTGGTGGTTTCGTACTTCCGAGAGGATCGGCGGAGTCAATTGAGGAGAGGTAATCTTCGGTTCTCATGTTGAAAGGGTCATACTAGAAAAAAATGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCCTATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGAT</canonical>
            <polymorphic>TCTCAGGAAGTCGATCTTTTTCGCGCAAATTAGCGAAATTACGCGGGATTGGAGAGGGATTTGGAAGTTCGATCTCGGTGATATTGAGTCCGTCGGTGGCGTTGACCATGGAGTTCATTATCGAGATCTCAGTAACCGATTCCATTAGTTCATTCATTGACTGTATAGCTTCCTCTTCAGCTTTCATGATTTTCTTGGAAATCTCCTCGTCTGAATACAACAAATATCAGGAACACTGGCGGATGATAAAACTTGATAACATCAGACAAAAACTAGACTCTATGTACCTGGATCTGGCCAAGCGAATTTGTTGGGGTACTGAAGGATACTGTCAATTGGTGGTTGAATGGAAAGATCTTCACCAGCTGTTGAATCTTCTCGGATGTCGGGGAAGTCACCGCGAAGATTTGGTGGTTTCGTACTTCCGAGAGGATCGGCGGAGTCAATTGAGGAGAGGTAATCTTCGGTTCTCATGTTGAAAGGGTCATACTAGAAAAAARTGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCCTATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACTGTCAATTGGTGGTTGA</pcr_primer_p1>
		<pcr_primer_p2>AAATACTGTGAAAGAGCCAAATA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>ATACTGTCAATTGGTGGTTGAATGGAAAGATCTTCACCAGCTGTTGAATCTTCTCGGATGTCGGGGAAGTCACCGCGAAGATTTGGTGGTTTCGTACTTCCGAGAGGATCGGCGGAGTCAATTGAGGAGAGGTAATCTTCGGTTCTCATGTTGAAAGGGTCATACTAGAAAAAAATGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCCTATTTGGCTCTTTCACAGTATTT</canonical_amplicon>
		<polymorphic_amplicon>ATACTGTCAATTGGTGGTTGAATGGAAAGATCTTCACCAGCTGTTGAATCTTCTCGGATGTCGGGGAAGTCACCGCGAAGATTTGGTGGTTTCGTACTTCCGAGAGGATCGGCGGAGTCAATTGAGGAGAGGTAATCTTCGGTTCTCATGTTGAAAGGGTCATACTAGAAAAAARTGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCCTATTTGGCTCTTTCACAGTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31071</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>485148</contig_pos>
        <strand>+</strand>
        <context>AATGAAGACC[C/T]TATTTGGCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAAAAAATGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACC</left_flank>
        <right_flank>TATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGT</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGGGATTGGAGAGGGATTTGGAAGTTCGATCTCGGTGATATTGAGTCCGTCGGTGGCGTTGACCATGGAGTTCATTATCGAGATCTCAGTAACCGATTCCATTAGTTCATTCATTGACTGTATAGCTTCCTCTTCAGCTTTCATGATTTTCTTGGAAATCTCCTCGTCTGAATACAACAAATATCAGGAACACTGGCGGATGATAAAACTTGATAACATCAGACAAAAACTAGACTCTATGTACCTGGATCTGGCCAAGCGAATTTGTTGGGGTACTGAAGGATACTGTCAATTGGTGGTTGAATGGAAAGATCTTCACCAGCTGTTGAATCTTCTCGGATGTCGGGGAAGTCACCGCGAAGATTTGGTGGTTTCGTACTTCCGAGAGGATCGGCGGAGTCAATTGAGGAGAGGTAATCTTCGGTTCTCATGTTGAAAGGGTCATACTAGAAAAAAATGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCCTATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGA</canonical>
            <polymorphic>GCGGGATTGGAGAGGGATTTGGAAGTTCGATCTCGGTGATATTGAGTCCGTCGGTGGCGTTGACCATGGAGTTCATTATCGAGATCTCAGTAACCGATTCCATTAGTTCATTCATTGACTGTATAGCTTCCTCTTCAGCTTTCATGATTTTCTTGGAAATCTCCTCGTCTGAATACAACAAATATCAGGAACACTGGCGGATGATAAAACTTGATAACATCAGACAAAAACTAGACTCTATGTACCTGGATCTGGCCAAGCGAATTTGTTGGGGTACTGAAGGATACTGTCAATTGGTGGTTGAATGGAAAGATCTTCACCAGCTGTTGAATCTTCTCGGATGTCGGGGAAGTCACCGCGAAGATTTGGTGGTTTCGTACTTCCGAGAGGATCGGCGGAGTCAATTGAGGAGAGGTAATCTTCGGTTCTCATGTTGAAAGGGTCATACTAGAAAAAAATGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCYTATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAAAGGGTCATACTAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGAGAAAATTTGAGAACCTACC</pcr_primer_p2>
		<pcr_amplicon_size>297</pcr_amplicon_size>
		<canonical_amplicon>TTGAAAGGGTCATACTAGAAAAAAATGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCCTATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCA</canonical_amplicon>
		<polymorphic_amplicon>TTGAAAGGGTCATACTAGAAAAAAATGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCYTATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31072</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>485230</contig_pos>
        <strand></strand>
        <context>cgatttctgt[A/T]aaagatatca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGT</left_flank>
        <right_flank>AAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCTCAGTAACCGATTCCATTAGTTCATTCATTGACTGTATAGCTTCCTCTTCAGCTTTCATGATTTTCTTGGAAATCTCCTCGTCTGAATACAACAAATATCAGGAACACTGGCGGATGATAAAACTTGATAACATCAGACAAAAACTAGACTCTATGTACCTGGATCTGGCCAAGCGAATTTGTTGGGGTACTGAAGGATACTGTCAATTGGTGGTTGAATGGAAAGATCTTCACCAGCTGTTGAATCTTCTCGGATGTCGGGGAAGTCACCGCGAAGATTTGGTGGTTTCGTACTTCCGAGAGGATCGGCGGAGTCAATTGAGGAGAGGTAATCTTCGGTTCTCATGTTGAAAGGGTCATACTAGAAAAAAATGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCCTATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCGAATCTACCAAAAATCTGTTTTATTCAGAAA</canonical>
            <polymorphic>GATCTCAGTAACCGATTCCATTAGTTCATTCATTGACTGTATAGCTTCCTCTTCAGCTTTCATGATTTTCTTGGAAATCTCCTCGTCTGAATACAACAAATATCAGGAACACTGGCGGATGATAAAACTTGATAACATCAGACAAAAACTAGACTCTATGTACCTGGATCTGGCCAAGCGAATTTGTTGGGGTACTGAAGGATACTGTCAATTGGTGGTTGAATGGAAAGATCTTCACCAGCTGTTGAATCTTCTCGGATGTCGGGGAAGTCACCGCGAAGATTTGGTGGTTTCGTACTTCCGAGAGGATCGGCGGAGTCAATTGAGGAGAGGTAATCTTCGGTTCTCATGTTGAAAGGGTCATACTAGAAAAAAATGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCCTATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTWAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCGAATCTACCAAAAATCTGTTTTATTCAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTGGCTCTTTCACAGTATTT</pcr_primer_p1>
		<pcr_primer_p2>TTCCCGGCTACTTAGATATTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAA</canonical_amplicon>
		<polymorphic_amplicon>TATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTWAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31073</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>485245</contig_pos>
        <strand></strand>
        <context>atatcaaaaa[C/T]atgttaactg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAA</left_flank>
        <right_flank>ATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCATTAGTTCATTCATTGACTGTATAGCTTCCTCTTCAGCTTTCATGATTTTCTTGGAAATCTCCTCGTCTGAATACAACAAATATCAGGAACACTGGCGGATGATAAAACTTGATAACATCAGACAAAAACTAGACTCTATGTACCTGGATCTGGCCAAGCGAATTTGTTGGGGTACTGAAGGATACTGTCAATTGGTGGTTGAATGGAAAGATCTTCACCAGCTGTTGAATCTTCTCGGATGTCGGGGAAGTCACCGCGAAGATTTGGTGGTTTCGTACTTCCGAGAGGATCGGCGGAGTCAATTGAGGAGAGGTAATCTTCGGTTCTCATGTTGAAAGGGTCATACTAGAAAAAAATGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCCTATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCGAATCTACCAAAAATCTGTTTTATTCAGAAAAATTATTGTTCCAAT</canonical>
            <polymorphic>TTCCATTAGTTCATTCATTGACTGTATAGCTTCCTCTTCAGCTTTCATGATTTTCTTGGAAATCTCCTCGTCTGAATACAACAAATATCAGGAACACTGGCGGATGATAAAACTTGATAACATCAGACAAAAACTAGACTCTATGTACCTGGATCTGGCCAAGCGAATTTGTTGGGGTACTGAAGGATACTGTCAATTGGTGGTTGAATGGAAAGATCTTCACCAGCTGTTGAATCTTCTCGGATGTCGGGGAAGTCACCGCGAAGATTTGGTGGTTTCGTACTTCCGAGAGGATCGGCGGAGTCAATTGAGGAGAGGTAATCTTCGGTTCTCATGTTGAAAGGGTCATACTAGAAAAAAATGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCCTATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAAYATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCGAATCTACCAAAAATCTGTTTTATTCAGAAAAATTATTGTTCCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 287 167 46</canonical_bands>
                <polymorphic_bands>667 287 46</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTTGGCTCTTTCACAGTATTT</pcr_primer_p1>
		<pcr_primer_p2>TTCCCGGCTACTTAGATATTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAA</canonical_amplicon>
		<polymorphic_amplicon>TATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAAYATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31074</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>485256</contig_pos>
        <strand></strand>
        <context>atgttaactg[A/T]taaactattt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTG</left_flank>
        <right_flank>TAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTCATTGACTGTATAGCTTCCTCTTCAGCTTTCATGATTTTCTTGGAAATCTCCTCGTCTGAATACAACAAATATCAGGAACACTGGCGGATGATAAAACTTGATAACATCAGACAAAAACTAGACTCTATGTACCTGGATCTGGCCAAGCGAATTTGTTGGGGTACTGAAGGATACTGTCAATTGGTGGTTGAATGGAAAGATCTTCACCAGCTGTTGAATCTTCTCGGATGTCGGGGAAGTCACCGCGAAGATTTGGTGGTTTCGTACTTCCGAGAGGATCGGCGGAGTCAATTGAGGAGAGGTAATCTTCGGTTCTCATGTTGAAAGGGTCATACTAGAAAAAAATGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCCTATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCGAATCTACCAAAAATCTGTTTTATTCAGAAAAATTATTGTTCCAATTCTTTTATCTT</canonical>
            <polymorphic>CATTCATTGACTGTATAGCTTCCTCTTCAGCTTTCATGATTTTCTTGGAAATCTCCTCGTCTGAATACAACAAATATCAGGAACACTGGCGGATGATAAAACTTGATAACATCAGACAAAAACTAGACTCTATGTACCTGGATCTGGCCAAGCGAATTTGTTGGGGTACTGAAGGATACTGTCAATTGGTGGTTGAATGGAAAGATCTTCACCAGCTGTTGAATCTTCTCGGATGTCGGGGAAGTCACCGCGAAGATTTGGTGGTTTCGTACTTCCGAGAGGATCGGCGGAGTCAATTGAGGAGAGGTAATCTTCGGTTCTCATGTTGAAAGGGTCATACTAGAAAAAAATGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCCTATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGWTAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCGAATCTACCAAAAATCTGTTTTATTCAGAAAAATTATTGTTCCAATTCTTTTATCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTGGCTCTTTCACAGTATTT</pcr_primer_p1>
		<pcr_primer_p2>TTCCCGGCTACTTAGATATTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAA</canonical_amplicon>
		<polymorphic_amplicon>TATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGWTAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31075</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>485320</contig_pos>
        <strand></strand>
        <context>tatctctcat[A/G]agaaacgaga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCAT</left_flank>
        <right_flank>AGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATACAACAAATATCAGGAACACTGGCGGATGATAAAACTTGATAACATCAGACAAAAACTAGACTCTATGTACCTGGATCTGGCCAAGCGAATTTGTTGGGGTACTGAAGGATACTGTCAATTGGTGGTTGAATGGAAAGATCTTCACCAGCTGTTGAATCTTCTCGGATGTCGGGGAAGTCACCGCGAAGATTTGGTGGTTTCGTACTTCCGAGAGGATCGGCGGAGTCAATTGAGGAGAGGTAATCTTCGGTTCTCATGTTGAAAGGGTCATACTAGAAAAAAATGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCCTATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCGAATCTACCAAAAATCTGTTTTATTCAGAAAAATTATTGTTCCAATTCTTTTATCTTATCCACCTAGCCTCCATAAACTGAAATGGATATACTGTTGACAAAAATCCGGGTTCCCCGCAGA</canonical>
            <polymorphic>ATACAACAAATATCAGGAACACTGGCGGATGATAAAACTTGATAACATCAGACAAAAACTAGACTCTATGTACCTGGATCTGGCCAAGCGAATTTGTTGGGGTACTGAAGGATACTGTCAATTGGTGGTTGAATGGAAAGATCTTCACCAGCTGTTGAATCTTCTCGGATGTCGGGGAAGTCACCGCGAAGATTTGGTGGTTTCGTACTTCCGAGAGGATCGGCGGAGTCAATTGAGGAGAGGTAATCTTCGGTTCTCATGTTGAAAGGGTCATACTAGAAAAAAATGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCCTATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATRAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCGAATCTACCAAAAATCTGTTTTATTCAGAAAAATTATTGTTCCAATTCTTTTATCTTATCCACCTAGCCTCCATAAACTGAAATGGATATACTGTTGACAAAAATCCGGGTTCCCCGCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTGGCTCTTTCACAGTATTT</pcr_primer_p1>
		<pcr_primer_p2>TTCCCGGCTACTTAGATATTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAA</canonical_amplicon>
		<polymorphic_amplicon>TATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATRAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31076</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>485462</contig_pos>
        <strand></strand>
        <context>CACTATAAgt[A/G]aggtctccaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGT</left_flank>
        <right_flank>AGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCACCAGCTGTTGAATCTTCTCGGATGTCGGGGAAGTCACCGCGAAGATTTGGTGGTTTCGTACTTCCGAGAGGATCGGCGGAGTCAATTGAGGAGAGGTAATCTTCGGTTCTCATGTTGAAAGGGTCATACTAGAAAAAAATGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCCTATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCGAATCTACCAAAAATCTGTTTTATTCAGAAAAATTATTGTTCCAATTCTTTTATCTTATCCACCTAGCCTCCATAAACTGAAATGGATATACTGTTGACAAAAATCCGGGTTCCCCGCAGATAATTGGGATCCGCTGTCAACATATACATCACATATCGTTCAAATTTGATTCCTTGTTCTTATGATCACATTTTATCACCAAAACAAAAACGTGTAGCTAATTATCAAGAACAGGAACGGTAAGGAGTTTTTTGAAGGGGAG</canonical>
            <polymorphic>CTTCACCAGCTGTTGAATCTTCTCGGATGTCGGGGAAGTCACCGCGAAGATTTGGTGGTTTCGTACTTCCGAGAGGATCGGCGGAGTCAATTGAGGAGAGGTAATCTTCGGTTCTCATGTTGAAAGGGTCATACTAGAAAAAAATGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCCTATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTRAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCGAATCTACCAAAAATCTGTTTTATTCAGAAAAATTATTGTTCCAATTCTTTTATCTTATCCACCTAGCCTCCATAAACTGAAATGGATATACTGTTGACAAAAATCCGGGTTCCCCGCAGATAATTGGGATCCGCTGTCAACATATACATCACATATCGTTCAAATTTGATTCCTTGTTCTTATGATCACATTTTATCACCAAAACAAAAACGTGTAGCTAATTATCAAGAACAGGAACGGTAAGGAGTTTTTTGAAGGGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATCTAAGTAGCCGGGAAAG</pcr_primer_p1>
		<pcr_primer_p2>CGATCAAACCAAGTTCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>AATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCG</canonical_amplicon>
		<polymorphic_amplicon>AATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTRAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31077</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>485582</contig_pos>
        <strand></strand>
        <context>tcaccgatac[A/T]ttrtcagttg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATAC</left_flank>
        <right_flank>TTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAGGGTCATACTAGAAAAAAATGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCCTATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCGAATCTACCAAAAATCTGTTTTATTCAGAAAAATTATTGTTCCAATTCTTTTATCTTATCCACCTAGCCTCCATAAACTGAAATGGATATACTGTTGACAAAAATCCGGGTTCCCCGCAGATAATTGGGATCCGCTGTCAACATATACATCACATATCGTTCAAATTTGATTCCTTGTTCTTATGATCACATTTTATCACCAAAACAAAAACGTGTAGCTAATTATCAAGAACAGGAACGGTAAGGAGTTTTTTGAAGGGGAGGAAGCAAAACATTTGAAACATTGATGAAAAATAAAATCACTTACTTGAATTGGAGTTTCGTAAACCAGGTAATAGTGATTGTTGTCGTGCACCCGACAGGAATGAGTTCCATGGTAGTGA</canonical>
            <polymorphic>TGAAAGGGTCATACTAGAAAAAAATGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCCTATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACWTTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCGAATCTACCAAAAATCTGTTTTATTCAGAAAAATTATTGTTCCAATTCTTTTATCTTATCCACCTAGCCTCCATAAACTGAAATGGATATACTGTTGACAAAAATCCGGGTTCCCCGCAGATAATTGGGATCCGCTGTCAACATATACATCACATATCGTTCAAATTTGATTCCTTGTTCTTATGATCACATTTTATCACCAAAACAAAAACGTGTAGCTAATTATCAAGAACAGGAACGGTAAGGAGTTTTTTGAAGGGGAGGAAGCAAAACATTTGAAACATTGATGAAAAATAAAATCACTTACTTGAATTGGAGTTTCGTAAACCAGGTAATAGTGATTGTTGTCGTGCACCCGACAGGAATGAGTTCCATGGTAGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATCTAAGTAGCCGGGAAAG</pcr_primer_p1>
		<pcr_primer_p2>CGATCAAACCAAGTTCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>AATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCG</canonical_amplicon>
		<polymorphic_amplicon>AATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACWTTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31078</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>485585</contig_pos>
        <strand></strand>
        <context>ccgatacwtt[A/G]tcagttgrca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATT</left_flank>
        <right_flank>TCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGGTCATACTAGAAAAAAATGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCCTATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCGAATCTACCAAAAATCTGTTTTATTCAGAAAAATTATTGTTCCAATTCTTTTATCTTATCCACCTAGCCTCCATAAACTGAAATGGATATACTGTTGACAAAAATCCGGGTTCCCCGCAGATAATTGGGATCCGCTGTCAACATATACATCACATATCGTTCAAATTTGATTCCTTGTTCTTATGATCACATTTTATCACCAAAACAAAAACGTGTAGCTAATTATCAAGAACAGGAACGGTAAGGAGTTTTTTGAAGGGGAGGAAGCAAAACATTTGAAACATTGATGAAAAATAAAATCACTTACTTGAATTGGAGTTTCGTAAACCAGGTAATAGTGATTGTTGTCGTGCACCCGACAGGAATGAGTTCCATGGTAGTGAGTT</canonical>
            <polymorphic>AAGGGTCATACTAGAAAAAAATGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCCTATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTRTCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCGAATCTACCAAAAATCTGTTTTATTCAGAAAAATTATTGTTCCAATTCTTTTATCTTATCCACCTAGCCTCCATAAACTGAAATGGATATACTGTTGACAAAAATCCGGGTTCCCCGCAGATAATTGGGATCCGCTGTCAACATATACATCACATATCGTTCAAATTTGATTCCTTGTTCTTATGATCACATTTTATCACCAAAACAAAAACGTGTAGCTAATTATCAAGAACAGGAACGGTAAGGAGTTTTTTGAAGGGGAGGAAGCAAAACATTTGAAACATTGATGAAAAATAAAATCACTTACTTGAATTGGAGTTTCGTAAACCAGGTAATAGTGATTGTTGTCGTGCACCCGACAGGAATGAGTTCCATGGTAGTGAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATCTAAGTAGCCGGGAAAG</pcr_primer_p1>
		<pcr_primer_p2>CGATCAAACCAAGTTCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>AATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCG</canonical_amplicon>
		<polymorphic_amplicon>AATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTRTCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31079</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>485593</contig_pos>
        <strand></strand>
        <context>ttrtcagttg[G/A]caaattttgt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTG</left_flank>
        <right_flank>CAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTAGAAAAAAATGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCCTATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCGAATCTACCAAAAATCTGTTTTATTCAGAAAAATTATTGTTCCAATTCTTTTATCTTATCCACCTAGCCTCCATAAACTGAAATGGATATACTGTTGACAAAAATCCGGGTTCCCCGCAGATAATTGGGATCCGCTGTCAACATATACATCACATATCGTTCAAATTTGATTCCTTGTTCTTATGATCACATTTTATCACCAAAACAAAAACGTGTAGCTAATTATCAAGAACAGGAACGGTAAGGAGTTTTTTGAAGGGGAGGAAGCAAAACATTTGAAACATTGATGAAAAATAAAATCACTTACTTGAATTGGAGTTTCGTAAACCAGGTAATAGTGATTGTTGTCGTGCACCCGACAGGAATGAGTTCCATGGTAGTGAGTTGAGATCGC</canonical>
            <polymorphic>TACTAGAAAAAAATGAGGGTATTCAAGAAGCGGTTAATTTTGGAAATGAAGACCCTATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGRCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCGAATCTACCAAAAATCTGTTTTATTCAGAAAAATTATTGTTCCAATTCTTTTATCTTATCCACCTAGCCTCCATAAACTGAAATGGATATACTGTTGACAAAAATCCGGGTTCCCCGCAGATAATTGGGATCCGCTGTCAACATATACATCACATATCGTTCAAATTTGATTCCTTGTTCTTATGATCACATTTTATCACCAAAACAAAAACGTGTAGCTAATTATCAAGAACAGGAACGGTAAGGAGTTTTTTGAAGGGGAGGAAGCAAAACATTTGAAACATTGATGAAAAATAAAATCACTTACTTGAATTGGAGTTTCGTAAACCAGGTAATAGTGATTGTTGTCGTGCACCCGACAGGAATGAGTTCCATGGTAGTGAGTTGAGATCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATCTAAGTAGCCGGGAAAG</pcr_primer_p1>
		<pcr_primer_p2>CGATCAAACCAAGTTCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>AATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCG</canonical_amplicon>
		<polymorphic_amplicon>AATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGRCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31080</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>485646</contig_pos>
        <strand></strand>
        <context>tcaaaattga[C/A]gatttgggtg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGA</left_flank>
        <right_flank>GATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCGAATCTACCAAAAATCTGTTTTATTCAGAAAAATTATTGTTCCAATTCTTTTATCTTATCCACCTAGCCTCCATAAACTGAAATGGATATACTGTTGACAAAAATCCGGGTTCCCCGCAGATAATTGGGATCCGCTGTCAACATATACATCACATATCGTTCAAATTTGATTCCTTGTTCTTATGATCACATTTTATCACCAAAACAAAAACGTGTAGCTAATTATCAAGAACAGGAACGGTAAGGAGTTTTTTGAAGGGGAGGAAGCAAAACATTTGAAACATTGATGAAAAATAAAATCACTTACTTGAATTGGAGTTTCGTAAACCAGGTAATAGTGATTGTTGTCGTGCACCCGACAGGAATGAGTTCCATGGTAGTGAGTTGAGATCGCGAAGTTGGATTTCGAAATTATTGACTCGAAACTTATATGATAATGAAGTTGGG</canonical>
            <polymorphic>CCTATTTGGCTCTTTCACAGTATTTCCTTTGATATAAACACACCTAAACTGTAAACTTTGAGCGGAGCTATCTCGATTTCTGTAAAAGATATCAAAAACATGTTAACTGATAAACTATTTATCATAATATCAGCAATGTTTTATCAGGTGACATATTTTTTTATATCTCTCATAAGAAACGAGATAATTGAGCTCAAAGTTTACTGTTTCGGTAGGTTCTCAAATTTTCTCAGAATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGAMGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCGAATCTACCAAAAATCTGTTTTATTCAGAAAAATTATTGTTCCAATTCTTTTATCTTATCCACCTAGCCTCCATAAACTGAAATGGATATACTGTTGACAAAAATCCGGGTTCCCCGCAGATAATTGGGATCCGCTGTCAACATATACATCACATATCGTTCAAATTTGATTCCTTGTTCTTATGATCACATTTTATCACCAAAACAAAAACGTGTAGCTAATTATCAAGAACAGGAACGGTAAGGAGTTTTTTGAAGGGGAGGAAGCAAAACATTTGAAACATTGATGAAAAATAAAATCACTTACTTGAATTGGAGTTTCGTAAACCAGGTAATAGTGATTGTTGTCGTGCACCCGACAGGAATGAGTTCCATGGTAGTGAGTTGAGATCGCGAAGTTGGATTTCGAAATTATTGACTCGAAACTTATATGATAATGAAGTTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATCTAAGTAGCCGGGAAAG</pcr_primer_p1>
		<pcr_primer_p2>CGATCAAACCAAGTTCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>AATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGACGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCG</canonical_amplicon>
		<polymorphic_amplicon>AATATCTAAGTAGCCGGGAAAGCCCGGATTCAAGAGTTTTCTGACTTTTATAATTTTCAATTTATCAAAGTTCACTATAAGTAAGGTCTCCAATAAAACGCCTTGCACAATGTTTCCATTTTGAACTCAATTATCTCAATTTCTGTGATAGGTATCAAAATTGTGTCAACTGATAAATAATTCATCATATTATCACCGATACATTATCAGTTGGCAAATTTTGTGATATCTCTGTTTGGAACCGAGATAATCGAGCTCAAAATTGAMGATTTGGGTGGGCTTCTATCAGAGAAAATCTAAATTTTGAACTTGGTTTGATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31081</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>515293</contig_pos>
        <strand>+</strand>
        <context>CTTCTTTGTT[C/T]CTCTCTCTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGCTTTTATGGTCATATTCTCATGAAGCCACCGATCTTACTTCTTTGTT</left_flank>
        <right_flank>CTCTCTCTCTCTCTCTCCAAAATTCTCATCCTAGTATCTTCCTCCAAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGATAAATAGCCAAAAATCTCAATATTACCTTGTACTCGACCAGGTCATCCTCCTCAGCCACAGTCAACTCGAACATGGTGTTGTGCTGGTGGAACTCCTCGTCCATCTTCTCGACAACATCGCGAGCGAAAATCTCTCTGGCCTGAAAACGTTTCTTTATGCAGTTATAGATTACTGTAGCCAAACTAACCTTGAGCCTGATGGAGTAGTAGACGTAGGTCATCTGTCTTTTCTTCTGCTGACAAATCAGCTTGGACAGCTCCAGCTCGCGGGCGACAAAGTTGCGGATGGATGGTTCGTGGGACATTTTCTTAAAAAATTTATCGATTTTTTATTATTTTCGGAATGGGAACGAGTTTTTGATTCCGTTGAAATAAGTAACTGAAATAGGGAAATAGGTAAGAAATACTTTTTTTGGAAATCAAAGTTTTCCAAATAACCTATATTCGCTTTTATGGTCATATTCTCATGAAGCCACCGATCTTACTTCTTTGTTTCTCTCTCTCTCTCTCTCCAAAATTCTCATCCTAGTATCTTCCTCCAAAAGAGAGCCACGAGGTAAAAAAGAAAAAGTGCAAAAAAAGAAGAAAAGAAAAAGAAAAGAAAGAAGAAAAACGAACGGAGGGGTCTTTATTGTGCGTGTGTTCAGAAGCAAGGACAAAAAATGGGGAGAGGAGAGAGGAGGGAAAGAAAAAAATTACCATGCATACTGGAAAAAATATGAATCAAAGAAAAAAAAACGTTCTGGGTCGTCAAAACAGACGTCATAATGAGAATAACACTTGGGGTCACAGTTTACTGTAGGACATGCAAGGACAAGGAATGGAAGCAGTATATGACTCATGCTGTACATGATTACAGCAGGACATGGGGTACTGTACAATCGGACTCGAGGGTTAATATTGAATTGAATTCGAGGGTTGCTGTGGAACTTCGGCAAAGAAGAAAAAAAAAGAAAAGTAGAGAAAAGTCGACAGAGGTAGATTCTTCTAGAAAC</canonical>
            <polymorphic>CCTGATAAATAGCCAAAAATCTCAATATTACCTTGTACTCGACCAGGTCATCCTCCTCAGCCACAGTCAACTCGAACATGGTGTTGTGCTGGTGGAACTCCTCGTCCATCTTCTCGACAACATCGCGAGCGAAAATCTCTCTGGCCTGAAAACGTTTCTTTATGCAGTTATAGATTACTGTAGCCAAACTAACCTTGAGCCTGATGGAGTAGTAGACGTAGGTCATCTGTCTTTTCTTCTGCTGACAAATCAGCTTGGACAGCTCCAGCTCGCGGGCGACAAAGTTGCGGATGGATGGTTCGTGGGACATTTTCTTAAAAAATTTATCGATTTTTTATTATTTTCGGAATGGGAACGAGTTTTTGATTCCGTTGAAATAAGTAACTGAAATAGGGAAATAGGTAAGAAATACTTTTTTTGGAAATCAAAGTTTTCCAAATAACCTATATTCGCTTTTATGGTCATATTCTCATGAAGCCACCGATCTTACTTCTTTGTTYCTCTCTCTCTCTCTCTCCAAAATTCTCATCCTAGTATCTTCCTCCAAAAGAGAGCCACGAGGTAAAAAAGAAAAAGTGCAAAAAAAGAAGAAAAGAAAAAGAAAAGAAAGAAGAAAAACGAACGGAGGGGTCTTTATTGTGCGTGTGTTCAGAAGCAAGGACAAAAAATGGGGAGAGGAGAGAGGAGGGAAAGAAAAAAATTACCATGCATACTGGAAAAAATATGAATCAAAGAAAAAAAAACGTTCTGGGTCGTCAAAACAGACGTCATAATGAGAATAACACTTGGGGTCACAGTTTACTGTAGGACATGCAAGGACAAGGAATGGAAGCAGTATATGACTCATGCTGTACATGATTACAGCAGGACATGGGGTACTGTACAATCGGACTCGAGGGTTAATATTGAATTGAATTCGAGGGTTGCTGTGGAACTTCGGCAAAGAAGAAAAAAAAAGAAAAGTAGAGAAAAGTCGACAGAGGTAGATTCTTCTAGAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTCGCTTTTATGGTCATATTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTTTCCCTCCTCTCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATTCGCTTTTATGGTCATATTCTCATGAAGCCACCGATCTTACTTCTTTGTTTCTCTCTCTCTCTCTCTCCAAAATTCTCATCCTAGTATCTTCCTCCAAAAGAGAGCCACGAGGTAAAAAAGAAAAAGTGCAAAAAAAGAAGAAAAGAAAAAGAAAAGAAAGAAGAAAAACGAACGGAGGGGTCTTTATTGTGCGTGTGTTCAGAAGCAAGGACAAAAAATGGGGAGAGGAGAGAGGAGGGAAAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TATTCGCTTTTATGGTCATATTCTCATGAAGCCACCGATCTTACTTCTTTGTTYCTCTCTCTCTCTCTCTCCAAAATTCTCATCCTAGTATCTTCCTCCAAAAGAGAGCCACGAGGTAAAAAAGAAAAAGTGCAAAAAAAGAAGAAAAGAAAAAGAAAAGAAAGAAGAAAAACGAACGGAGGGGTCTTTATTGTGCGTGTGTTCAGAAGCAAGGACAAAAAATGGGGAGAGGAGAGAGGAGGGAAAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31082</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>515430</contig_pos>
        <strand>+</strand>
        <context>GGGGTCTTTA[C/G]TGTGCGTGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAAGAAAAGAAAAAGAAAAGAAAGAAGAAAAACGAACGGAGGGGTCTTTA</left_flank>
        <right_flank>TGTGCGTGTGTTCAGAAGCAAGGACAAAAAATGGGGAGAGGAGAGAGGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCTGGCCTGAAAACGTTTCTTTATGCAGTTATAGATTACTGTAGCCAAACTAACCTTGAGCCTGATGGAGTAGTAGACGTAGGTCATCTGTCTTTTCTTCTGCTGACAAATCAGCTTGGACAGCTCCAGCTCGCGGGCGACAAAGTTGCGGATGGATGGTTCGTGGGACATTTTCTTAAAAAATTTATCGATTTTTTATTATTTTCGGAATGGGAACGAGTTTTTGATTCCGTTGAAATAAGTAACTGAAATAGGGAAATAGGTAAGAAATACTTTTTTTGGAAATCAAAGTTTTCCAAATAACCTATATTCGCTTTTATGGTCATATTCTCATGAAGCCACCGATCTTACTTCTTTGTTTCTCTCTCTCTCTCTCTCCAAAATTCTCATCCTAGTATCTTCCTCCAAAAGAGAGCCACGAGGTAAAAAAGAAAAAGTGCAAAAAAAGAAGAAAAGAAAAAGAAAAGAAAGAAGAAAAACGAACGGAGGGGTCTTTATTGTGCGTGTGTTCAGAAGCAAGGACAAAAAATGGGGAGAGGAGAGAGGAGGGAAAGAAAAAAATTACCATGCATACTGGAAAAAATATGAATCAAAGAAAAAAAAACGTTCTGGGTCGTCAAAACAGACGTCATAATGAGAATAACACTTGGGGTCACAGTTTACTGTAGGACATGCAAGGACAAGGAATGGAAGCAGTATATGACTCATGCTGTACATGATTACAGCAGGACATGGGGTACTGTACAATCGGACTCGAGGGTTAATATTGAATTGAATTCGAGGGTTGCTGTGGAACTTCGGCAAAGAAGAAAAAAAAAGAAAAGTAGAGAAAAGTCGACAGAGGTAGATTCTTCTAGAAACTTTCAGATGGTTTCCAAAAAAAAACTCAGGAAATAACTAGGTTTGAAAAGGAGGGGTCTTTATTGTGTGTGTGTTCAGAAACAAGGGCAAAAAATGGGGAGAGGAGAGAGGAGGGAAAGAAAAAAATTACCATGCAT</canonical>
            <polymorphic>TCTCTGGCCTGAAAACGTTTCTTTATGCAGTTATAGATTACTGTAGCCAAACTAACCTTGAGCCTGATGGAGTAGTAGACGTAGGTCATCTGTCTTTTCTTCTGCTGACAAATCAGCTTGGACAGCTCCAGCTCGCGGGCGACAAAGTTGCGGATGGATGGTTCGTGGGACATTTTCTTAAAAAATTTATCGATTTTTTATTATTTTCGGAATGGGAACGAGTTTTTGATTCCGTTGAAATAAGTAACTGAAATAGGGAAATAGGTAAGAAATACTTTTTTTGGAAATCAAAGTTTTCCAAATAACCTATATTCGCTTTTATGGTCATATTCTCATGAAGCCACCGATCTTACTTCTTTGTTTCTCTCTCTCTCTCTCTCCAAAATTCTCATCCTAGTATCTTCCTCCAAAAGAGAGCCACGAGGTAAAAAAGAAAAAGTGCAAAAAAAGAAGAAAAGAAAAAGAAAAGAAAGAAGAAAAACGAACGGAGGGGTCTTTASTGTGCGTGTGTTCAGAAGCAAGGACAAAAAATGGGGAGAGGAGAGAGGAGGGAAAGAAAAAAATTACCATGCATACTGGAAAAAATATGAATCAAAGAAAAAAAAACGTTCTGGGTCGTCAAAACAGACGTCATAATGAGAATAACACTTGGGGTCACAGTTTACTGTAGGACATGCAAGGACAAGGAATGGAAGCAGTATATGACTCATGCTGTACATGATTACAGCAGGACATGGGGTACTGTACAATCGGACTCGAGGGTTAATATTGAATTGAATTCGAGGGTTGCTGTGGAACTTCGGCAAAGAAGAAAAAAAAAGAAAAGTAGAGAAAAGTCGACAGAGGTAGATTCTTCTAGAAACTTTCAGATGGTTTCCAAAAAAAAACTCAGGAAATAACTAGGTTTGAAAAGGAGGGGTCTTTATTGTGTGTGTGTTCAGAAACAAGGGCAAAAAATGGGGAGAGGAGAGAGGAGGGAAAGAAAAAAATTACCATGCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCTAGTATCTTCCTCCAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TCATTATGACGTCTGTTTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCCTAGTATCTTCCTCCAAAAGAGAGCCACGAGGTAAAAAAGAAAAAGTGCAAAAAAAGAAGAAAAGAAAAAGAAAAGAAAGAAGAAAAACGAACGGAGGGGTCTTTATTGTGCGTGTGTTCAGAAGCAAGGACAAAAAATGGGGAGAGGAGAGAGGAGGGAAAGAAAAAAATTACCATGCATACTGGAAAAAATATGAATCAAAGAAAAAAAAACGTTCTGGGTCGTCAAAACAGACGTCATAATGA</canonical_amplicon>
		<polymorphic_amplicon>ATCCTAGTATCTTCCTCCAAAAGAGAGCCACGAGGTAAAAAAGAAAAAGTGCAAAAAAAGAAGAAAAGAAAAAGAAAAGAAAGAAGAAAAACGAACGGAGGGGTCTTTASTGTGCGTGTGTTCAGAAGCAAGGACAAAAAATGGGGAGAGGAGAGAGGAGGGAAAGAAAAAAATTACCATGCATACTGGAAAAAATATGAATCAAAGAAAAAAAAACGTTCTGGGTCGTCAAAACAGACGTCATAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31083</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>516996</contig_pos>
        <strand></strand>
        <context>cggtcaGGGG[T/C]GGGCTTTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGG</left_flank>
        <right_flank>GGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAGTAGAAATTCCATTTTCCCAACATCAAAAATATGGGAAAATTGACAGGAAGATTTATTTGTGCACCTTTGACATACCCTAATCCGACAATCTCTTACGAAAAATTCCGAATTTTTTTTTCGGAAAAATTATTACAAAAAAAAAATATTTTCAGAATTTCAGTCCTAAACTGGTCTTTTGGAAACTTTGAAATTCGGATTCAGTTTCAAAAATCCCTGCCAAATTTGAAAGCTCCAACCCTTTTAAAGTTGTAACCAGATGAGCTACGGTAGCGTTGGTGATGTCATATGAAGCCGTCAGGACAGCCACGGGTTGTGTAAACACCGATCACCGTACACCGTCACGTCAAAATGCATACTCTCGCTCAAAAACCGTGACAAACTTTCTTGCTTGAAAATTGAATACCGTATTTTCTCTAACAGAAGCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGGATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAA</canonical>
            <polymorphic>TGAAGTAGAAATTCCATTTTCCCAACATCAAAAATATGGGAAAATTGACAGGAAGATTTATTTGTGCACCTTTGACATACCCTAATCCGACAATCTCTTACGAAAAATTCCGAATTTTTTTTTCGGAAAAATTATTACAAAAAAAAAATATTTTCAGAATTTCAGTCCTAAACTGGTCTTTTGGAAACTTTGAAATTCGGATTCAGTTTCAAAAATCCCTGCCAAATTTGAAAGCTCCAACCCTTTTAAAGTTGTAACCAGATGAGCTACGGTAGCGTTGGTGATGTCATATGAAGCCGTCAGGACAGCCACGGGTTGTGTAAACACCGATCACCGTACACCGTCACGTCAAAATGCATACTCTCGCTCAAAAACCGTGACAAACTTTCTTGCTTGAAAATTGAATACCGTATTTTCTCTAACAGAAGCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGYGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGGATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>215 103 95 66 57 53 51 43 42 33 28 27 24 24 21 17 17 16 11 10 9 8 7 7 6 6 2 2</canonical_bands>
                <polymorphic_bands>215 103 95 80 66 57 51 43 42 33 28 24 24 21 17 17 16 11 10 9 8 7 7 6 6 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGACAAACTTTCTTGCTTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTTTTTGTCGTGATAATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTGACAAACTTTCTTGCTTGAAAATTGAATACCGTATTTTCTCTAACAGAAGCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTGACAAACTTTCTTGCTTGAAAATTGAATACCGTATTTTCTCTAACAGAAGCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGYGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31084</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>517038</contig_pos>
        <strand>+</strand>
        <context>TTTTCTGAAA[A/T]TTTTTCAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAA</left_flank>
        <right_flank>TTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGACAGGAAGATTTATTTGTGCACCTTTGACATACCCTAATCCGACAATCTCTTACGAAAAATTCCGAATTTTTTTTTCGGAAAAATTATTACAAAAAAAAAATATTTTCAGAATTTCAGTCCTAAACTGGTCTTTTGGAAACTTTGAAATTCGGATTCAGTTTCAAAAATCCCTGCCAAATTTGAAAGCTCCAACCCTTTTAAAGTTGTAACCAGATGAGCTACGGTAGCGTTGGTGATGTCATATGAAGCCGTCAGGACAGCCACGGGTTGTGTAAACACCGATCACCGTACACCGTCACGTCAAAATGCATACTCTCGCTCAAAAACCGTGACAAACTTTCTTGCTTGAAAATTGAATACCGTATTTTCTCTAACAGAAGCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGGATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAAATGTTAACTGCACCCATGCTTCATCTTCAAAAGTGATACATG</canonical>
            <polymorphic>AATTGACAGGAAGATTTATTTGTGCACCTTTGACATACCCTAATCCGACAATCTCTTACGAAAAATTCCGAATTTTTTTTTCGGAAAAATTATTACAAAAAAAAAATATTTTCAGAATTTCAGTCCTAAACTGGTCTTTTGGAAACTTTGAAATTCGGATTCAGTTTCAAAAATCCCTGCCAAATTTGAAAGCTCCAACCCTTTTAAAGTTGTAACCAGATGAGCTACGGTAGCGTTGGTGATGTCATATGAAGCCGTCAGGACAGCCACGGGTTGTGTAAACACCGATCACCGTACACCGTCACGTCAAAATGCATACTCTCGCTCAAAAACCGTGACAAACTTTCTTGCTTGAAAATTGAATACCGTATTTTCTCTAACAGAAGCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAWTTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGGATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAAATGTTAACTGCACCCATGCTTCATCTTCAAAAGTGATACATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>399 316 103 63 45 36 31 7</canonical_bands>
                <polymorphic_bands>715 103 63 45 36 31 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>174 148 103 100 63 63 61 54 45 36 34 31 28 24 17 12 7 0</canonical_bands>
                <polymorphic_bands>174 148 103 100 87 63 61 54 45 36 34 31 28 17 12 7 0</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGACAAACTTTCTTGCTTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTTTTTGTCGTGATAATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTGACAAACTTTCTTGCTTGAAAATTGAATACCGTATTTTCTCTAACAGAAGCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTGACAAACTTTCTTGCTTGAAAATTGAATACCGTATTTTCTCTAACAGAAGCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAWTTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31085</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>517280</contig_pos>
        <strand></strand>
        <context>agtgttacgc[C/G]gggattcaga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGC</left_flank>
        <right_flank>GGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTCATATGAAGCCGTCAGGACAGCCACGGGTTGTGTAAACACCGATCACCGTACACCGTCACGTCAAAATGCATACTCTCGCTCAAAAACCGTGACAAACTTTCTTGCTTGAAAATTGAATACCGTATTTTCTCTAACAGAAGCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGGATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAAATGTTAACTGCACCCATGCTTCATCTTCAAAAGTGATACATGAAATTTTTTGAAAAATTTTTTAGTCTTGGAATGTTTTCCTTATGGGATTCTAAATTGTATTTTGTTGTCTTTTTTCACTTTCATTTCCTTCTTCTAATTTTTGAAAAAAAATTTTTTTCGAAAAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAATGAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCT</canonical>
            <polymorphic>TGTCATATGAAGCCGTCAGGACAGCCACGGGTTGTGTAAACACCGATCACCGTACACCGTCACGTCAAAATGCATACTCTCGCTCAAAAACCGTGACAAACTTTCTTGCTTGAAAATTGAATACCGTATTTTCTCTAACAGAAGCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGGATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCSGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAAATGTTAACTGCACCCATGCTTCATCTTCAAAAGTGATACATGAAATTTTTTGAAAAATTTTTTAGTCTTGGAATGTTTTCCTTATGGGATTCTAAATTGTATTTTGTTGTCTTTTTTCACTTTCATTTCCTTCTTCTAATTTTTGAAAAAAAATTTTTTTCGAAAAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAATGAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 365 77 57</canonical_bands>
                <polymorphic_bands>578 365 57</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGCAATTCAATGCTAGAC</pcr_primer_p1>
		<pcr_primer_p2>AGAGTCCCTTTTACGACTAACAC</pcr_primer_p2>
		<pcr_amplicon_size>991</pcr_amplicon_size>
		<canonical_amplicon>GAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGC</canonical_amplicon>
		<polymorphic_amplicon>GAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCSGGGATTCAGATGAAACCTATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31086</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>517291</contig_pos>
        <strand></strand>
        <context>gggattcaga[T/C]raaacctatg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGA</left_flank>
        <right_flank>GAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTAT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCGTCAGGACAGCCACGGGTTGTGTAAACACCGATCACCGTACACCGTCACGTCAAAATGCATACTCTCGCTCAAAAACCGTGACAAACTTTCTTGCTTGAAAATTGAATACCGTATTTTCTCTAACAGAAGCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGGATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAAATGTTAACTGCACCCATGCTTCATCTTCAAAAGTGATACATGAAATTTTTTGAAAAATTTTTTAGTCTTGGAATGTTTTCCTTATGGGATTCTAAATTGTATTTTGTTGTCTTTTTTCACTTTCATTTCCTTCTTCTAATTTTTGAAAAAAAATTTTTTTCGAAAAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAATGAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCTGATAGACATGA</canonical>
            <polymorphic>GCCGTCAGGACAGCCACGGGTTGTGTAAACACCGATCACCGTACACCGTCACGTCAAAATGCATACTCTCGCTCAAAAACCGTGACAAACTTTCTTGCTTGAAAATTGAATACCGTATTTTCTCTAACAGAAGCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGGATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGAYGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAAATGTTAACTGCACCCATGCTTCATCTTCAAAAGTGATACATGAAATTTTTTGAAAAATTTTTTAGTCTTGGAATGTTTTCCTTATGGGATTCTAAATTGTATTTTGTTGTCTTTTTTCACTTTCATTTCCTTCTTCTAATTTTTGAAAAAAAATTTTTTTCGAAAAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAATGAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCTGATAGACATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGCAATTCAATGCTAGAC</pcr_primer_p1>
		<pcr_primer_p2>AGAGTCCCTTTTACGACTAACAC</pcr_primer_p2>
		<pcr_amplicon_size>991</pcr_amplicon_size>
		<canonical_amplicon>GAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGT</canonical_amplicon>
		<polymorphic_amplicon>GAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGAYGAAACCTATGCTAAATAGTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31087</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>517292</contig_pos>
        <strand></strand>
        <context>ggattcagay[G/A]aaacctatgc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGAT</left_flank>
        <right_flank>AAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGTCAGGACAGCCACGGGTTGTGTAAACACCGATCACCGTACACCGTCACGTCAAAATGCATACTCTCGCTCAAAAACCGTGACAAACTTTCTTGCTTGAAAATTGAATACCGTATTTTCTCTAACAGAAGCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGGATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAAATGTTAACTGCACCCATGCTTCATCTTCAAAAGTGATACATGAAATTTTTTGAAAAATTTTTTAGTCTTGGAATGTTTTCCTTATGGGATTCTAAATTGTATTTTGTTGTCTTTTTTCACTTTCATTTCCTTCTTCTAATTTTTGAAAAAAAATTTTTTTCGAAAAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAATGAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCTGATAGACATGAT</canonical>
            <polymorphic>CCGTCAGGACAGCCACGGGTTGTGTAAACACCGATCACCGTACACCGTCACGTCAAAATGCATACTCTCGCTCAAAAACCGTGACAAACTTTCTTGCTTGAAAATTGAATACCGTATTTTCTCTAACAGAAGCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGGATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATRAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAAATGTTAACTGCACCCATGCTTCATCTTCAAAAGTGATACATGAAATTTTTTGAAAAATTTTTTAGTCTTGGAATGTTTTCCTTATGGGATTCTAAATTGTATTTTGTTGTCTTTTTTCACTTTCATTTCCTTCTTCTAATTTTTGAAAAAAAATTTTTTTCGAAAAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAATGAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCTGATAGACATGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGCAATTCAATGCTAGAC</pcr_primer_p1>
		<pcr_primer_p2>AGAGTCCCTTTTACGACTAACAC</pcr_primer_p2>
		<pcr_amplicon_size>991</pcr_amplicon_size>
		<canonical_amplicon>GAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTA</canonical_amplicon>
		<polymorphic_amplicon>GAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATRAAACCTATGCTAAATAGTAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31088</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>517331</contig_pos>
        <strand></strand>
        <context>ctagaacaaa[C/T]acaaaattat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAA</left_flank>
        <right_flank>ACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTACACCGTCACGTCAAAATGCATACTCTCGCTCAAAAACCGTGACAAACTTTCTTGCTTGAAAATTGAATACCGTATTTTCTCTAACAGAAGCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGGATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAAATGTTAACTGCACCCATGCTTCATCTTCAAAAGTGATACATGAAATTTTTTGAAAAATTTTTTAGTCTTGGAATGTTTTCCTTATGGGATTCTAAATTGTATTTTGTTGTCTTTTTTCACTTTCATTTCCTTCTTCTAATTTTTGAAAAAAAATTTTTTTCGAAAAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAATGAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCTGATAGACATGATCCCCCGAGTACTTTTTTTTCAAAAATTGGCACTTTTTGA</canonical>
            <polymorphic>GTACACCGTCACGTCAAAATGCATACTCTCGCTCAAAAACCGTGACAAACTTTCTTGCTTGAAAATTGAATACCGTATTTTCTCTAACAGAAGCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGGATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAAYACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAAATGTTAACTGCACCCATGCTTCATCTTCAAAAGTGATACATGAAATTTTTTGAAAAATTTTTTAGTCTTGGAATGTTTTCCTTATGGGATTCTAAATTGTATTTTGTTGTCTTTTTTCACTTTCATTTCCTTCTTCTAATTTTTGAAAAAAAATTTTTTTCGAAAAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAATGAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCTGATAGACATGATCCCCCGAGTACTTTTTTTTCAAAAATTGGCACTTTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>133 103 95 84 75 63 57 53 43 42 33 27 24 24 23 21 17 17 16 11 10 8 8 6 5 2</canonical_bands>
                <polymorphic_bands>133 119 95 84 75 63 57 53 43 42 33 27 24 24 23 21 17 17 11 10 8 8 6 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGCAATTCAATGCTAGAC</pcr_primer_p1>
		<pcr_primer_p2>AGAGTCCCTTTTACGACTAACAC</pcr_primer_p2>
		<pcr_amplicon_size>991</pcr_amplicon_size>
		<canonical_amplicon>GAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATAT</canonical_amplicon>
		<polymorphic_amplicon>GAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAAYACAAAATTATAGCGGTCCATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31089</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>517347</contig_pos>
        <strand></strand>
        <context>attatagcgg[T/C]ccatatgaag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGG</left_flank>
        <right_flank>CCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATGCATACTCTCGCTCAAAAACCGTGACAAACTTTCTTGCTTGAAAATTGAATACCGTATTTTCTCTAACAGAAGCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGGATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAAATGTTAACTGCACCCATGCTTCATCTTCAAAAGTGATACATGAAATTTTTTGAAAAATTTTTTAGTCTTGGAATGTTTTCCTTATGGGATTCTAAATTGTATTTTGTTGTCTTTTTTCACTTTCATTTCCTTCTTCTAATTTTTGAAAAAAAATTTTTTTCGAAAAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAATGAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCTGATAGACATGATCCCCCGAGTACTTTTTTTTCAAAAATTGGCACTTTTTGAATTCGTTGGTACTCGA</canonical>
            <polymorphic>AAATGCATACTCTCGCTCAAAAACCGTGACAAACTTTCTTGCTTGAAAATTGAATACCGTATTTTCTCTAACAGAAGCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGGATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGYCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAAATGTTAACTGCACCCATGCTTCATCTTCAAAAGTGATACATGAAATTTTTTGAAAAATTTTTTAGTCTTGGAATGTTTTCCTTATGGGATTCTAAATTGTATTTTGTTGTCTTTTTTCACTTTCATTTCCTTCTTCTAATTTTTGAAAAAAAATTTTTTTCGAAAAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAATGAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCTGATAGACATGATCCCCCGAGTACTTTTTTTTCAAAAATTGGCACTTTTTGAATTCGTTGGTACTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>498 396 106</canonical_bands>
                <polymorphic_bands>604 396</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGCAATTCAATGCTAGAC</pcr_primer_p1>
		<pcr_primer_p2>AGAGTCCCTTTTACGACTAACAC</pcr_primer_p2>
		<pcr_amplicon_size>991</pcr_amplicon_size>
		<canonical_amplicon>GAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGAT</canonical_amplicon>
		<polymorphic_amplicon>GAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGYCCATATGAAGGTATGTTAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31090</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>517360</contig_pos>
        <strand></strand>
        <context>atatgaaggt[A/C]tgttaagatg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGT</left_flank>
        <right_flank>TGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCTCAAAAACCGTGACAAACTTTCTTGCTTGAAAATTGAATACCGTATTTTCTCTAACAGAAGCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGGATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAAATGTTAACTGCACCCATGCTTCATCTTCAAAAGTGATACATGAAATTTTTTGAAAAATTTTTTAGTCTTGGAATGTTTTCCTTATGGGATTCTAAATTGTATTTTGTTGTCTTTTTTCACTTTCATTTCCTTCTTCTAATTTTTGAAAAAAAATTTTTTTCGAAAAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAATGAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCTGATAGACATGATCCCCCGAGTACTTTTTTTTCAAAAATTGGCACTTTTTGAATTCGTTGGTACTCGAAATTTGGATACTT</canonical>
            <polymorphic>CGCTCAAAAACCGTGACAAACTTTCTTGCTTGAAAATTGAATACCGTATTTTCTCTAACAGAAGCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGGATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTMTGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAAATGTTAACTGCACCCATGCTTCATCTTCAAAAGTGATACATGAAATTTTTTGAAAAATTTTTTAGTCTTGGAATGTTTTCCTTATGGGATTCTAAATTGTATTTTGTTGTCTTTTTTCACTTTCATTTCCTTCTTCTAATTTTTGAAAAAAAATTTTTTTCGAAAAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAATGAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCTGATAGACATGATCCCCCGAGTACTTTTTTTTCAAAAATTGGCACTTTTTGAATTCGTTGGTACTCGAAATTTGGATACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGCAATTCAATGCTAGAC</pcr_primer_p1>
		<pcr_primer_p2>AGAGTCCCTTTTACGACTAACAC</pcr_primer_p2>
		<pcr_amplicon_size>991</pcr_amplicon_size>
		<canonical_amplicon>GAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTMTGTTAAGATGGCGAGCCGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31091</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>517376</contig_pos>
        <strand></strand>
        <context>agatggcgag[C/A]crttttatga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAG</left_flank>
        <right_flank>CGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCAT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAACTTTCTTGCTTGAAAATTGAATACCGTATTTTCTCTAACAGAAGCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGGATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAAATGTTAACTGCACCCATGCTTCATCTTCAAAAGTGATACATGAAATTTTTTGAAAAATTTTTTAGTCTTGGAATGTTTTCCTTATGGGATTCTAAATTGTATTTTGTTGTCTTTTTTCACTTTCATTTCCTTCTTCTAATTTTTGAAAAAAAATTTTTTTCGAAAAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAATGAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCTGATAGACATGATCCCCCGAGTACTTTTTTTTCAAAAATTGGCACTTTTTGAATTCGTTGGTACTCGAAATTTGGATACTTTCCATTTTCCTTGTTT</canonical>
            <polymorphic>CAAACTTTCTTGCTTGAAAATTGAATACCGTATTTTCTCTAACAGAAGCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGGATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGMCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAAATGTTAACTGCACCCATGCTTCATCTTCAAAAGTGATACATGAAATTTTTTGAAAAATTTTTTAGTCTTGGAATGTTTTCCTTATGGGATTCTAAATTGTATTTTGTTGTCTTTTTTCACTTTCATTTCCTTCTTCTAATTTTTGAAAAAAAATTTTTTTCGAAAAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAATGAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCTGATAGACATGATCCCCCGAGTACTTTTTTTTCAAAAATTGGCACTTTTTGAATTCGTTGGTACTCGAAATTTGGATACTTTCCATTTTCCTTGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>501 206 170 72 51</canonical_bands>
                <polymorphic_bands>707 170 72 51</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGCAATTCAATGCTAGAC</pcr_primer_p1>
		<pcr_primer_p2>AGAGTCCCTTTTACGACTAACAC</pcr_primer_p2>
		<pcr_amplicon_size>991</pcr_amplicon_size>
		<canonical_amplicon>GAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGT</canonical_amplicon>
		<polymorphic_amplicon>GAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGMCGTTTTATGATTTTTCGCGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31092</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>517378</contig_pos>
        <strand></strand>
        <context>atggcgagmc[G/A]ttttatgatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCC</left_flank>
        <right_flank>TTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTTTCTTGCTTGAAAATTGAATACCGTATTTTCTCTAACAGAAGCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGGATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAAATGTTAACTGCACCCATGCTTCATCTTCAAAAGTGATACATGAAATTTTTTGAAAAATTTTTTAGTCTTGGAATGTTTTCCTTATGGGATTCTAAATTGTATTTTGTTGTCTTTTTTCACTTTCATTTCCTTCTTCTAATTTTTGAAAAAAAATTTTTTTCGAAAAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAATGAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCTGATAGACATGATCCCCCGAGTACTTTTTTTTCAAAAATTGGCACTTTTTGAATTCGTTGGTACTCGAAATTTGGATACTTTCCATTTTCCTTGTTTCA</canonical>
            <polymorphic>AACTTTCTTGCTTGAAAATTGAATACCGTATTTTCTCTAACAGAAGCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGGATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCRTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAAATGTTAACTGCACCCATGCTTCATCTTCAAAAGTGATACATGAAATTTTTTGAAAAATTTTTTAGTCTTGGAATGTTTTCCTTATGGGATTCTAAATTGTATTTTGTTGTCTTTTTTCACTTTCATTTCCTTCTTCTAATTTTTGAAAAAAAATTTTTTTCGAAAAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAATGAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCTGATAGACATGATCCCCCGAGTACTTTTTTTTCAAAAATTGGCACTTTTTGAATTCGTTGGTACTCGAAATTTGGATACTTTCCATTTTCCTTGTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGCAATTCAATGCTAGAC</pcr_primer_p1>
		<pcr_primer_p2>AGAGTCCCTTTTACGACTAACAC</pcr_primer_p2>
		<pcr_amplicon_size>991</pcr_amplicon_size>
		<canonical_amplicon>GAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCRTTTTATGATTTTTCGCGAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31093</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>517394</contig_pos>
        <strand></strand>
        <context>tgatttttcg[C/T]gagtttggag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCG</left_flank>
        <right_flank>GAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGAATACCGTATTTTCTCTAACAGAAGCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGGATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAAATGTTAACTGCACCCATGCTTCATCTTCAAAAGTGATACATGAAATTTTTTGAAAAATTTTTTAGTCTTGGAATGTTTTCCTTATGGGATTCTAAATTGTATTTTGTTGTCTTTTTTCACTTTCATTTCCTTCTTCTAATTTTTGAAAAAAAATTTTTTTCGAAAAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAATGAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCTGATAGACATGATCCCCCGAGTACTTTTTTTTCAAAAATTGGCACTTTTTGAATTCGTTGGTACTCGAAATTTGGATACTTTCCATTTTCCTTGTTTCACTTTTGAAGATGAAGC</canonical>
            <polymorphic>AATTGAATACCGTATTTTCTCTAACAGAAGCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGGATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGYGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAAATGTTAACTGCACCCATGCTTCATCTTCAAAAGTGATACATGAAATTTTTTGAAAAATTTTTTAGTCTTGGAATGTTTTCCTTATGGGATTCTAAATTGTATTTTGTTGTCTTTTTTCACTTTCATTTCCTTCTTCTAATTTTTGAAAAAAAATTTTTTTCGAAAAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAATGAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCTGATAGACATGATCCCCCGAGTACTTTTTTTTCAAAAATTGGCACTTTTTGAATTCGTTGGTACTCGAAATTTGGATACTTTCCATTTTCCTTGTTTCACTTTTGAAGATGAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGCGA</site>
                <isoschizomers>
                    <enzyme>Bsp68I</enzyme>
                    <enzyme>NruI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGCAATTCAATGCTAGAC</pcr_primer_p1>
		<pcr_primer_p2>AGAGTCCCTTTTACGACTAACAC</pcr_primer_p2>
		<pcr_amplicon_size>991</pcr_amplicon_size>
		<canonical_amplicon>GAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTC</canonical_amplicon>
		<polymorphic_amplicon>GAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGYGAGTTTGGAGTCGGTACCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31094</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>517413</contig_pos>
        <strand></strand>
        <context>agtcggtacc[T/C]ttcgagagwy</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACC</left_flank>
        <right_flank>TTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAACAGAAGCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGGATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAAATGTTAACTGCACCCATGCTTCATCTTCAAAAGTGATACATGAAATTTTTTGAAAAATTTTTTAGTCTTGGAATGTTTTCCTTATGGGATTCTAAATTGTATTTTGTTGTCTTTTTTCACTTTCATTTCCTTCTTCTAATTTTTGAAAAAAAATTTTTTTCGAAAAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAATGAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCTGATAGACATGATCCCCCGAGTACTTTTTTTTCAAAAATTGGCACTTTTTGAATTCGTTGGTACTCGAAATTTGGATACTTTCCATTTTCCTTGTTTCACTTTTGAAGATGAAGCATGGGTGCAGTTAACATTA</canonical>
            <polymorphic>TCTAACAGAAGCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGGATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCYTTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAAATGTTAACTGCACCCATGCTTCATCTTCAAAAGTGATACATGAAATTTTTTGAAAAATTTTTTAGTCTTGGAATGTTTTCCTTATGGGATTCTAAATTGTATTTTGTTGTCTTTTTTCACTTTCATTTCCTTCTTCTAATTTTTGAAAAAAAATTTTTTTCGAAAAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAATGAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCTGATAGACATGATCCCCCGAGTACTTTTTTTTCAAAAATTGGCACTTTTTGAATTCGTTGGTACTCGAAATTTGGATACTTTCCATTTTCCTTGTTTCACTTTTGAAGATGAAGCATGGGTGCAGTTAACATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGCAATTCAATGCTAGAC</pcr_primer_p1>
		<pcr_primer_p2>AGAGTCCCTTTTACGACTAACAC</pcr_primer_p2>
		<pcr_amplicon_size>991</pcr_amplicon_size>
		<canonical_amplicon>GAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTG</canonical_amplicon>
		<polymorphic_amplicon>GAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCYTTCGAGAGTCCATAACCTTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31095</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>517422</contig_pos>
        <strand></strand>
        <context>cyttcgagag[T/A]ycataacytt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAG</left_flank>
        <right_flank>CCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGGATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAAATGTTAACTGCACCCATGCTTCATCTTCAAAAGTGATACATGAAATTTTTTGAAAAATTTTTTAGTCTTGGAATGTTTTCCTTATGGGATTCTAAATTGTATTTTGTTGTCTTTTTTCACTTTCATTTCCTTCTTCTAATTTTTGAAAAAAAATTTTTTTCGAAAAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAATGAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCTGATAGACATGATCCCCCGAGTACTTTTTTTTCAAAAATTGGCACTTTTTGAATTCGTTGGTACTCGAAATTTGGATACTTTCCATTTTCCTTGTTTCACTTTTGAAGATGAAGCATGGGTGCAGTTAACATTAATACTTGTC</canonical>
            <polymorphic>AGCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGGATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGWCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAAATGTTAACTGCACCCATGCTTCATCTTCAAAAGTGATACATGAAATTTTTTGAAAAATTTTTTAGTCTTGGAATGTTTTCCTTATGGGATTCTAAATTGTATTTTGTTGTCTTTTTTCACTTTCATTTCCTTCTTCTAATTTTTGAAAAAAAATTTTTTTCGAAAAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAATGAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCTGATAGACATGATCCCCCGAGTACTTTTTTTTCAAAAATTGGCACTTTTTGAATTCGTTGGTACTCGAAATTTGGATACTTTCCATTTTCCTTGTTTCACTTTTGAAGATGAAGCATGGGTGCAGTTAACATTAATACTTGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>211 201 165 160 127 119 17</canonical_bands>
                <polymorphic_bands>211 201 182 160 127 119</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGCAATTCAATGCTAGAC</pcr_primer_p1>
		<pcr_primer_p2>AGAGTCCCTTTTACGACTAACAC</pcr_primer_p2>
		<pcr_amplicon_size>991</pcr_amplicon_size>
		<canonical_amplicon>GAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGT</canonical_amplicon>
		<polymorphic_amplicon>GAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGWCCATAACCTTGTGAATTTTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31096</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>517423</contig_pos>
        <strand></strand>
        <context>yttcgagagw[C/T]cataacyttg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGT</left_flank>
        <right_flank>CATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGGATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAAATGTTAACTGCACCCATGCTTCATCTTCAAAAGTGATACATGAAATTTTTTGAAAAATTTTTTAGTCTTGGAATGTTTTCCTTATGGGATTCTAAATTGTATTTTGTTGTCTTTTTTCACTTTCATTTCCTTCTTCTAATTTTTGAAAAAAAATTTTTTTCGAAAAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAATGAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCTGATAGACATGATCCCCCGAGTACTTTTTTTTCAAAAATTGGCACTTTTTGAATTCGTTGGTACTCGAAATTTGGATACTTTCCATTTTCCTTGTTTCACTTTTGAAGATGAAGCATGGGTGCAGTTAACATTAATACTTGTCT</canonical>
            <polymorphic>GCGCATTCGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGGATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTYCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAAATGTTAACTGCACCCATGCTTCATCTTCAAAAGTGATACATGAAATTTTTTGAAAAATTTTTTAGTCTTGGAATGTTTTCCTTATGGGATTCTAAATTGTATTTTGTTGTCTTTTTTCACTTTCATTTCCTTCTTCTAATTTTTGAAAAAAAATTTTTTTCGAAAAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAATGAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCTGATAGACATGATCCCCCGAGTACTTTTTTTTCAAAAATTGGCACTTTTTGAATTCGTTGGTACTCGAAATTTGGATACTTTCCATTTTCCTTGTTTCACTTTTGAAGATGAAGCATGGGTGCAGTTAACATTAATACTTGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>212 200 165 160 127 119 17</canonical_bands>
                <polymorphic_bands>212 200 182 160 127 119</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGCAATTCAATGCTAGAC</pcr_primer_p1>
		<pcr_primer_p2>AGAGTCCCTTTTACGACTAACAC</pcr_primer_p2>
		<pcr_amplicon_size>991</pcr_amplicon_size>
		<canonical_amplicon>GAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGTG</canonical_amplicon>
		<polymorphic_amplicon>GAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTYCATAACCTTGTGAATTTTTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31097</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>517430</contig_pos>
        <strand></strand>
        <context>agwycataac[C/T]ttgtgaattt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAAC</left_flank>
        <right_flank>TTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGAT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGGATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAAATGTTAACTGCACCCATGCTTCATCTTCAAAAGTGATACATGAAATTTTTTGAAAAATTTTTTAGTCTTGGAATGTTTTCCTTATGGGATTCTAAATTGTATTTTGTTGTCTTTTTTCACTTTCATTTCCTTCTTCTAATTTTTGAAAAAAAATTTTTTTCGAAAAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAATGAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCTGATAGACATGATCCCCCGAGTACTTTTTTTTCAAAAATTGGCACTTTTTGAATTCGTTGGTACTCGAAATTTGGATACTTTCCATTTTCCTTGTTTCACTTTTGAAGATGAAGCATGGGTGCAGTTAACATTAATACTTGTCTGTTTATC</canonical>
            <polymorphic>CGAACCGTCAATTTTGAGCTCAATTATCTGGATTTCTGTGAAAGGTATCAAAAAGCGGTCAGGGGTGGGCTTTTGTTAGAGAAATTACGGTATCGATTTTTCTGAAAATTTTTCAACTCACAAATAAAGAATGAAAACGCCTTATTAATATTTATTACAAAAGATTACGAATTATCACGACAAAAAGAAAAGGATTCACATTCAATTCCGATTTCCGGATCACTTTTAAAACACACAGGCTTATAAGAAAGAGAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACYTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAAATGTTAACTGCACCCATGCTTCATCTTCAAAAGTGATACATGAAATTTTTTGAAAAATTTTTTAGTCTTGGAATGTTTTCCTTATGGGATTCTAAATTGTATTTTGTTGTCTTTTTTCACTTTCATTTCCTTCTTCTAATTTTTGAAAAAAAATTTTTTTCGAAAAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAATGAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCTGATAGACATGATCCCCCGAGTACTTTTTTTTCAAAAATTGGCACTTTTTGAATTCGTTGGTACTCGAAATTTGGATACTTTCCATTTTCCTTGTTTCACTTTTGAAGATGAAGCATGGGTGCAGTTAACATTAATACTTGTCTGTTTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGCAATTCAATGCTAGAC</pcr_primer_p1>
		<pcr_primer_p2>AGAGTCCCTTTTACGACTAACAC</pcr_primer_p2>
		<pcr_amplicon_size>991</pcr_amplicon_size>
		<canonical_amplicon>GAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGG</canonical_amplicon>
		<polymorphic_amplicon>GAGGCAATTCAATGCTAGACCGGTGGTCAGCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACYTTGTGAATTTTTGTGGTAGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31098</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>517711</contig_pos>
        <strand></strand>
        <context>aaattgaaat[G/A]agtctcgtat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAAT</left_flank>
        <right_flank>AGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAAATGTTAACTGCACCCATGCTTCATCTTCAAAAGTGATACATGAAATTTTTTGAAAAATTTTTTAGTCTTGGAATGTTTTCCTTATGGGATTCTAAATTGTATTTTGTTGTCTTTTTTCACTTTCATTTCCTTCTTCTAATTTTTGAAAAAAAATTTTTTTCGAAAAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAATGAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCTGATAGACATGATCCCCCGAGTACTTTTTTTTCAAAAATTGGCACTTTTTGAATTCGTTGGTACTCGAAATTTGGATACTTTCCATTTTCCTTGTTTCACTTTTGAAGATGAAGCATGGGTGCAGTTAACATTAATACTTGTCTGTTTATCGCCTTTTGAATAAAAAAAAGTTTGGACCACAAAAATTCACAAGGTTATGGTCTCTCGAAAGGTTACGACTCCAAACTCGCAAAAAATCATAAAATGGCTCGCCATCTGAACATACCTTCATATGGGCCGCTATAATTTTGTGGTTGTTCGAGATAGCCGGTGTACTACTATTTAGCATAGGTTTTATCTGAATCCCCGCGTAACACTTGGGAGGCTTCCCGTGTTAGTCGTAAAAGGGACTCTTACCAAAAATTTTTATTGCATTAAAATGTTTCAAAAAA</canonical>
            <polymorphic>GCGGGGAGAAACACGAATGGGGGCGAAGTGAGATTGCACCGAAAGAACAGACAAACCAAGTGTTACGCCGGGATTCAGATGAAACCTATGCTAAATAGTAGTACACTATCTAGAACAAACACAAAATTATAGCGGTCCATATGAAGGTATGTTAAGATGGCGAGCCGTTTTATGATTTTTCGCGAGTTTGGAGTCGGTACCTTTCGAGAGTCCATAACCTTGTGAATTTTTGTGGTAGAGGTCCAAACTTTTTTTATTCAAAAGGCGATAAACAGACAAGTATAAATGTTAACTGCACCCATGCTTCATCTTCAAAAGTGATACATGAAATTTTTTGAAAAATTTTTTAGTCTTGGAATGTTTTCCTTATGGGATTCTAAATTGTATTTTGTTGTCTTTTTTCACTTTCATTTCCTTCTTCTAATTTTTGAAAAAAAATTTTTTTCGAAAAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAATRAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCTGATAGACATGATCCCCCGAGTACTTTTTTTTCAAAAATTGGCACTTTTTGAATTCGTTGGTACTCGAAATTTGGATACTTTCCATTTTCCTTGTTTCACTTTTGAAGATGAAGCATGGGTGCAGTTAACATTAATACTTGTCTGTTTATCGCCTTTTGAATAAAAAAAAGTTTGGACCACAAAAATTCACAAGGTTATGGTCTCTCGAAAGGTTACGACTCCAAACTCGCAAAAAATCATAAAATGGCTCGCCATCTGAACATACCTTCATATGGGCCGCTATAATTTTGTGGTTGTTCGAGATAGCCGGTGTACTACTATTTAGCATAGGTTTTATCTGAATCCCCGCGTAACACTTGGGAGGCTTCCCGTGTTAGTCGTAAAAGGGACTCTTACCAAAAATTTTTATTGCATTAAAATGTTTCAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>286 165 127 123 119 72 48 43 17</canonical_bands>
                <polymorphic_bands>413 165 123 119 72 48 43 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGCAATTCAATGCTAGAC</pcr_primer_p1>
		<pcr_primer_p2>AGAGTCCCTTTTACGACTAACAC</pcr_primer_p2>
		<pcr_amplicon_size>991</pcr_amplicon_size>
		<canonical_amplicon>TGAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCTGATAGACATGATCCCCCGAGTACTTTTTTTTCAAAAATTGGCACTTTTTGAATTCGTTGGTACTCGAAATTTGGATACTTTCCATTTTCCTTGTTTCACTTTTGAAGATGAAGCATGGGTGCAGTTAACATTAATACTTGTCTGTTTATCGCCTTTTGAATAAAAAAAAGTTTGGACCACAAAAATTCACAAGGTTATGGTCTCTCGAAAGGTTACGACTCCAAACTCGCAAAAAATCATAAAATGGCTCGCCATCTGAACATACCTTCATATGGGCCGCTATAATTTTGTGGTTGTTCGAGATAGCCGGTGTACTACTATTTAGCATAGGTTTTATCTGAATCCCCGCGTAACACTTGGGAGGCTTCCCGTGTTAGTCGTAAAAGGGACTCT</canonical_amplicon>
		<polymorphic_amplicon>TRAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCTGATAGACATGATCCCCCGAGTACTTTTTTTTCAAAAATTGGCACTTTTTGAATTCGTTGGTACTCGAAATTTGGATACTTTCCATTTTCCTTGTTTCACTTTTGAAGATGAAGCATGGGTGCAGTTAACATTAATACTTGTCTGTTTATCGCCTTTTGAATAAAAAAAAGTTTGGACCACAAAAATTCACAAGGTTATGGTCTCTCGAAAGGTTACGACTCCAAACTCGCAAAAAATCATAAAATGGCTCGCCATCTGAACATACCTTCATATGGGCCGCTATAATTTTGTGGTTGTTCGAGATAGCCGGTGTACTACTATTTAGCATAGGTTTTATCTGAATCCCCGCGTAACACTTGGGAGGCTTCCCGTGTTAGTCGTAAAAGGGACTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31099</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>518115</contig_pos>
        <strand></strand>
        <context>gcataggttt[T/C]atctgaatcc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTTTGTGGTTGTTCGAGATAGCCGGTGTACTACTATTTAGCATAGGTTT</left_flank>
        <right_flank>ATCTGAATCCCCGCGTAACACTTGGGAGGCTTCCCGTGTTAGTCGTAAAA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTCATTTCCTTCTTCTAATTTTTGAAAAAAAATTTTTTTCGAAAAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAATGAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCTGATAGACATGATCCCCCGAGTACTTTTTTTTCAAAAATTGGCACTTTTTGAATTCGTTGGTACTCGAAATTTGGATACTTTCCATTTTCCTTGTTTCACTTTTGAAGATGAAGCATGGGTGCAGTTAACATTAATACTTGTCTGTTTATCGCCTTTTGAATAAAAAAAAGTTTGGACCACAAAAATTCACAAGGTTATGGTCTCTCGAAAGGTTACGACTCCAAACTCGCAAAAAATCATAAAATGGCTCGCCATCTGAACATACCTTCATATGGGCCGCTATAATTTTGTGGTTGTTCGAGATAGCCGGTGTACTACTATTTAGCATAGGTTTTATCTGAATCCCCGCGTAACACTTGGGAGGCTTCCCGTGTTAGTCGTAAAAGGGACTCTTACCAAAAATTTTTATTGCATTAAAATGTTTCAAAAAATGTGTATTTTCCTGATATTATTGCGAAAAAATTCAAAAAAAAAATCCTTTCTTACATGGAAATTTTTCCGGATTTTTTTCGGTTTTCATGTCCGGCAGGTAACAAACGTAAAAAACCACTGTCGGCCACTCGAACAAACGGCTGTCAGGCGCCGTGGCCTAGGTTTCTCACTGCGCGGGAATTCAAATCCTCGTCCATTTTCTCACTTTTTTTGAAAATGTTTCCCTTCAACCGGCCTTTTTCAGGGAATTCGGTTTTTTTCGAATTTTTTCGCTATAATATTGGGAAACAGACAACTTTTCAAACATTATAATGCAAAAAAAATTTTTGGTGGAGACCCCCTTTAAGTACAAAATGGCTATTCCGAATTCTCGACAGTTCCTCCATCCTCCTCAGCATCCTCG</canonical>
            <polymorphic>CTTTCATTTCCTTCTTCTAATTTTTGAAAAAAAATTTTTTTCGAAAAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAATGAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCTGATAGACATGATCCCCCGAGTACTTTTTTTTCAAAAATTGGCACTTTTTGAATTCGTTGGTACTCGAAATTTGGATACTTTCCATTTTCCTTGTTTCACTTTTGAAGATGAAGCATGGGTGCAGTTAACATTAATACTTGTCTGTTTATCGCCTTTTGAATAAAAAAAAGTTTGGACCACAAAAATTCACAAGGTTATGGTCTCTCGAAAGGTTACGACTCCAAACTCGCAAAAAATCATAAAATGGCTCGCCATCTGAACATACCTTCATATGGGCCGCTATAATTTTGTGGTTGTTCGAGATAGCCGGTGTACTACTATTTAGCATAGGTTTYATCTGAATCCCCGCGTAACACTTGGGAGGCTTCCCGTGTTAGTCGTAAAAGGGACTCTTACCAAAAATTTTTATTGCATTAAAATGTTTCAAAAAATGTGTATTTTCCTGATATTATTGCGAAAAAATTCAAAAAAAAAATCCTTTCTTACATGGAAATTTTTCCGGATTTTTTTCGGTTTTCATGTCCGGCAGGTAACAAACGTAAAAAACCACTGTCGGCCACTCGAACAAACGGCTGTCAGGCGCCGTGGCCTAGGTTTCTCACTGCGCGGGAATTCAAATCCTCGTCCATTTTCTCACTTTTTTTGAAAATGTTTCCCTTCAACCGGCCTTTTTCAGGGAATTCGGTTTTTTTCGAATTTTTTCGCTATAATATTGGGAAACAGACAACTTTTCAAACATTATAATGCAAAAAAAATTTTTGGTGGAGACCCCCTTTAAGTACAAAATGGCTATTCCGAATTCTCGACAGTTCCTCCATCCTCCTCAGCATCCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGCAATTCAATGCTAGAC</pcr_primer_p1>
		<pcr_primer_p2>AGAGTCCCTTTTACGACTAACAC</pcr_primer_p2>
		<pcr_amplicon_size>991</pcr_amplicon_size>
		<canonical_amplicon>TTATCTGAATCCCCGCGTAACACTTGGGAGGCTTCCCGTGTTAGTCGTAAAAGGGACTCT</canonical_amplicon>
		<polymorphic_amplicon>TYATCTGAATCCCCGCGTAACACTTGGGAGGCTTCCCGTGTTAGTCGTAAAAGGGACTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31100</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>518128</contig_pos>
        <strand></strand>
        <context>ctgaatcccc[G/C]cgtaacactt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TCGAGATAGCCGGTGTACTACTATTTAGCATAGGTTTTATCTGAATCCCC</left_flank>
        <right_flank>CGTAACACTTGGGAGGCTTCCCGTGTTAGTCGTAAAAGGGACTCTTACCA</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCTAATTTTTGAAAAAAAATTTTTTTCGAAAAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAATGAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCTGATAGACATGATCCCCCGAGTACTTTTTTTTCAAAAATTGGCACTTTTTGAATTCGTTGGTACTCGAAATTTGGATACTTTCCATTTTCCTTGTTTCACTTTTGAAGATGAAGCATGGGTGCAGTTAACATTAATACTTGTCTGTTTATCGCCTTTTGAATAAAAAAAAGTTTGGACCACAAAAATTCACAAGGTTATGGTCTCTCGAAAGGTTACGACTCCAAACTCGCAAAAAATCATAAAATGGCTCGCCATCTGAACATACCTTCATATGGGCCGCTATAATTTTGTGGTTGTTCGAGATAGCCGGTGTACTACTATTTAGCATAGGTTTTATCTGAATCCCCGCGTAACACTTGGGAGGCTTCCCGTGTTAGTCGTAAAAGGGACTCTTACCAAAAATTTTTATTGCATTAAAATGTTTCAAAAAATGTGTATTTTCCTGATATTATTGCGAAAAAATTCAAAAAAAAAATCCTTTCTTACATGGAAATTTTTCCGGATTTTTTTCGGTTTTCATGTCCGGCAGGTAACAAACGTAAAAAACCACTGTCGGCCACTCGAACAAACGGCTGTCAGGCGCCGTGGCCTAGGTTTCTCACTGCGCGGGAATTCAAATCCTCGTCCATTTTCTCACTTTTTTTGAAAATGTTTCCCTTCAACCGGCCTTTTTCAGGGAATTCGGTTTTTTTCGAATTTTTTCGCTATAATATTGGGAAACAGACAACTTTTCAAACATTATAATGCAAAAAAAATTTTTGGTGGAGACCCCCTTTAAGTACAAAATGGCTATTCCGAATTCTCGACAGTTCCTCCATCCTCCTCAGCATCCTCGTCCTCCTCTTCCT</canonical>
            <polymorphic>CTTCTAATTTTTGAAAAAAAATTTTTTTCGAAAAATTTCATGTATACATGAATTTTGAATATTTTTGGTAAAAAATTGAAATGAGTCTCGTATCTCAAAGGATAGACCCATATTAGAACACGGATATTTCCCTTACTTGCCCTGAGAAATCTGATAGACATGATCCCCCGAGTACTTTTTTTTCAAAAATTGGCACTTTTTGAATTCGTTGGTACTCGAAATTTGGATACTTTCCATTTTCCTTGTTTCACTTTTGAAGATGAAGCATGGGTGCAGTTAACATTAATACTTGTCTGTTTATCGCCTTTTGAATAAAAAAAAGTTTGGACCACAAAAATTCACAAGGTTATGGTCTCTCGAAAGGTTACGACTCCAAACTCGCAAAAAATCATAAAATGGCTCGCCATCTGAACATACCTTCATATGGGCCGCTATAATTTTGTGGTTGTTCGAGATAGCCGGTGTACTACTATTTAGCATAGGTTTTATCTGAATCCCCSCGTAACACTTGGGAGGCTTCCCGTGTTAGTCGTAAAAGGGACTCTTACCAAAAATTTTTATTGCATTAAAATGTTTCAAAAAATGTGTATTTTCCTGATATTATTGCGAAAAAATTCAAAAAAAAAATCCTTTCTTACATGGAAATTTTTCCGGATTTTTTTCGGTTTTCATGTCCGGCAGGTAACAAACGTAAAAAACCACTGTCGGCCACTCGAACAAACGGCTGTCAGGCGCCGTGGCCTAGGTTTCTCACTGCGCGGGAATTCAAATCCTCGTCCATTTTCTCACTTTTTTTGAAAATGTTTCCCTTCAACCGGCCTTTTTCAGGGAATTCGGTTTTTTTCGAATTTTTTCGCTATAATATTGGGAAACAGACAACTTTTCAAACATTATAATGCAAAAAAAATTTTTGGTGGAGACCCCCTTTAAGTACAAAATGGCTATTCCGAATTCTCGACAGTTCCTCCATCCTCCTCAGCATCCTCGTCCTCCTCTTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 258 242</canonical_bands>
                <polymorphic_bands>758 242</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>502 429 69</canonical_bands>
                <polymorphic_bands>571 429</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGCAATTCAATGCTAGAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGGTAAGAGTCCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>1000</pcr_amplicon_size>
		<canonical_amplicon>CGCGTAACACTTGGGAGGCTTCCCGTGTTAGTCGTAAAAGGGACTCTTACCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CSCGTAACACTTGGGAGGCTTCCCGTGTTAGTCGTAAAAGGGACTCTTACCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31101</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>532351</contig_pos>
        <strand>+</strand>
        <context>TATTATAACC[C/T]AAATCATTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGAGAAAATTGCCTGAAAATTTTAATTCAAAAACATATTATTATAACC</left_flank>
        <right_flank>AAATCATTTACCCAATCATATTTTGAAATTCTCCATAGTGTCCAAAAGTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGTCGGCTCCTTACACGACAACTCCTCGCACCACCACCACAACTCAGACTCCACTTAATTACTACCTAGAACTTTTGCGTCAGCGCGAAAGGGAATATGAGTTGAGAAAACAGGAAGAGCTCAGAAGACGAGAGGAAATGGAGCGAGAGAATGAAAAGTTCAGACAGGAATGGAATCTCTATCAGCAACTCAAAAAGCAGAAAATGGAGTTTGAGTGGAACAAATAGCTTCTGTTTTTCATATTATTTAGATTTTTCATTTTGCCAACCATCTGGTTCATTGAACTGGTAAATTCCTTCTTTCTTAATTTTTACGCAAGTCCTATTTCTTCTTATTTTCAAAAATAGTTCGCACCTCTGAATTCTTAAAACTGAAAACAACAAAGCTGCTACTGCTCCAATGAACAGTCCAGGAACCACATCCAAGCATACTGTAGATAAGAAGGTGATTGAGAAAATTGCCTGAAAATTTTAATTCAAAAACATATTATTATAACCTAAATCATTTACCCAATCATATTTTGAAATTCTCCATAGTGTCCAAAAGTTTGTCAAATGTAGAAACATGCCTCGAAGTGCGACAATAACAATGCACGAGAGGAAACACTGAATATTCCCTATTTATTTTTAATCTCAAAATTTTCACTCACCGTTGGAAGGTTTTCCAGCAGAGGTCCTATGAAAAATAGAACCAATGTTAACACCATAGCAGCAAATATCGCCGAGATCTGAAATTATAAAAAATTCTACTTATCCTTTTGTACAATAAATTATCATCTCTTTTTTTGTTGTCCCATTGTCTCTTTCATCCCTAAAAACATGACGTTTCTCTCTCTCTCTTTTTTCCAATAATTTGGTTTGAAATACTTTTGAAATATTAAAGAATTTTAATGAACCAAGCATTGATATTTCTGGCCTATGGTTTTAAGCTTTTCTACCCATTTTAATGTCTGTAATCTTGCTCAATTAAGTATAGTTCCGGCCAATGGATATAGGAAA</canonical>
            <polymorphic>ATGGTCGGCTCCTTACACGACAACTCCTCGCACCACCACCACAACTCAGACTCCACTTAATTACTACCTAGAACTTTTGCGTCAGCGCGAAAGGGAATATGAGTTGAGAAAACAGGAAGAGCTCAGAAGACGAGAGGAAATGGAGCGAGAGAATGAAAAGTTCAGACAGGAATGGAATCTCTATCAGCAACTCAAAAAGCAGAAAATGGAGTTTGAGTGGAACAAATAGCTTCTGTTTTTCATATTATTTAGATTTTTCATTTTGCCAACCATCTGGTTCATTGAACTGGTAAATTCCTTCTTTCTTAATTTTTACGCAAGTCCTATTTCTTCTTATTTTCAAAAATAGTTCGCACCTCTGAATTCTTAAAACTGAAAACAACAAAGCTGCTACTGCTCCAATGAACAGTCCAGGAACCACATCCAAGCATACTGTAGATAAGAAGGTGATTGAGAAAATTGCCTGAAAATTTTAATTCAAAAACATATTATTATAACCYAAATCATTTACCCAATCATATTTTGAAATTCTCCATAGTGTCCAAAAGTTTGTCAAATGTAGAAACATGCCTCGAAGTGCGACAATAACAATGCACGAGAGGAAACACTGAATATTCCCTATTTATTTTTAATCTCAAAATTTTCACTCACCGTTGGAAGGTTTTCCAGCAGAGGTCCTATGAAAAATAGAACCAATGTTAACACCATAGCAGCAAATATCGCCGAGATCTGAAATTATAAAAAATTCTACTTATCCTTTTGTACAATAAATTATCATCTCTTTTTTTGTTGTCCCATTGTCTCTTTCATCCCTAAAAACATGACGTTTCTCTCTCTCTCTTTTTTCCAATAATTTGGTTTGAAATACTTTTGAAATATTAAAGAATTTTAATGAACCAAGCATTGATATTTCTGGCCTATGGTTTTAAGCTTTTCTACCCATTTTAATGTCTGTAATCTTGCTCAATTAAGTATAGTTCCGGCCAATGGATATAGGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACGCAAGTCCTATTTCTTCTTA</pcr_primer_p1>
		<pcr_primer_p2>CTACATTTGACAAACTTTTGGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TACGCAAGTCCTATTTCTTCTTATTTTCAAAAATAGTTCGCACCTCTGAATTCTTAAAACTGAAAACAACAAAGCTGCTACTGCTCCAATGAACAGTCCAGGAACCACATCCAAGCATACTGTAGATAAGAAGGTGATTGAGAAAATTGCCTGAAAATTTTAATTCAAAAACATATTATTATAACCTAAATCATTTACCCAATCATATTTTGAAATTCTCCATAGTGTCCAAAAGTTTGTCAAATGTAG</canonical_amplicon>
		<polymorphic_amplicon>TACGCAAGTCCTATTTCTTCTTATTTTCAAAAATAGTTCGCACCTCTGAATTCTTAAAACTGAAAACAACAAAGCTGCTACTGCTCCAATGAACAGTCCAGGAACCACATCCAAGCATACTGTAGATAAGAAGGTGATTGAGAAAATTGCCTGAAAATTTTAATTCAAAAACATATTATTATAACCYAAATCATTTACCCAATCATATTTTGAAATTCTCCATAGTGTCCAAAAGTTTGTCAAATGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31102</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>532432</contig_pos>
        <strand>+</strand>
        <context>CTCGAAGTGC[A/G]ACAATAACAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCCATAGTGTCCAAAAGTTTGTCAAATGTAGAAACATGCCTCGAAGTGC</left_flank>
        <right_flank>ACAATAACAATGCACGAGAGGAAACACTGAATATTCCCTATTTATTTTTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGCGCGAAAGGGAATATGAGTTGAGAAAACAGGAAGAGCTCAGAAGACGAGAGGAAATGGAGCGAGAGAATGAAAAGTTCAGACAGGAATGGAATCTCTATCAGCAACTCAAAAAGCAGAAAATGGAGTTTGAGTGGAACAAATAGCTTCTGTTTTTCATATTATTTAGATTTTTCATTTTGCCAACCATCTGGTTCATTGAACTGGTAAATTCCTTCTTTCTTAATTTTTACGCAAGTCCTATTTCTTCTTATTTTCAAAAATAGTTCGCACCTCTGAATTCTTAAAACTGAAAACAACAAAGCTGCTACTGCTCCAATGAACAGTCCAGGAACCACATCCAAGCATACTGTAGATAAGAAGGTGATTGAGAAAATTGCCTGAAAATTTTAATTCAAAAACATATTATTATAACCTAAATCATTTACCCAATCATATTTTGAAATTCTCCATAGTGTCCAAAAGTTTGTCAAATGTAGAAACATGCCTCGAAGTGCGACAATAACAATGCACGAGAGGAAACACTGAATATTCCCTATTTATTTTTAATCTCAAAATTTTCACTCACCGTTGGAAGGTTTTCCAGCAGAGGTCCTATGAAAAATAGAACCAATGTTAACACCATAGCAGCAAATATCGCCGAGATCTGAAATTATAAAAAATTCTACTTATCCTTTTGTACAATAAATTATCATCTCTTTTTTTGTTGTCCCATTGTCTCTTTCATCCCTAAAAACATGACGTTTCTCTCTCTCTCTTTTTTCCAATAATTTGGTTTGAAATACTTTTGAAATATTAAAGAATTTTAATGAACCAAGCATTGATATTTCTGGCCTATGGTTTTAAGCTTTTCTACCCATTTTAATGTCTGTAATCTTGCTCAATTAAGTATAGTTCCGGCCAATGGATATAGGAAAACACAATTTTCGGTGAATTTTCGCTCATTTTAATCATTATCAGGAGTCTAAAAGATTTGAAAAGCGCAAAACAGGCTTTGA</canonical>
            <polymorphic>TCAGCGCGAAAGGGAATATGAGTTGAGAAAACAGGAAGAGCTCAGAAGACGAGAGGAAATGGAGCGAGAGAATGAAAAGTTCAGACAGGAATGGAATCTCTATCAGCAACTCAAAAAGCAGAAAATGGAGTTTGAGTGGAACAAATAGCTTCTGTTTTTCATATTATTTAGATTTTTCATTTTGCCAACCATCTGGTTCATTGAACTGGTAAATTCCTTCTTTCTTAATTTTTACGCAAGTCCTATTTCTTCTTATTTTCAAAAATAGTTCGCACCTCTGAATTCTTAAAACTGAAAACAACAAAGCTGCTACTGCTCCAATGAACAGTCCAGGAACCACATCCAAGCATACTGTAGATAAGAAGGTGATTGAGAAAATTGCCTGAAAATTTTAATTCAAAAACATATTATTATAACCTAAATCATTTACCCAATCATATTTTGAAATTCTCCATAGTGTCCAAAAGTTTGTCAAATGTAGAAACATGCCTCGAAGTGCRACAATAACAATGCACGAGAGGAAACACTGAATATTCCCTATTTATTTTTAATCTCAAAATTTTCACTCACCGTTGGAAGGTTTTCCAGCAGAGGTCCTATGAAAAATAGAACCAATGTTAACACCATAGCAGCAAATATCGCCGAGATCTGAAATTATAAAAAATTCTACTTATCCTTTTGTACAATAAATTATCATCTCTTTTTTTGTTGTCCCATTGTCTCTTTCATCCCTAAAAACATGACGTTTCTCTCTCTCTCTTTTTTCCAATAATTTGGTTTGAAATACTTTTGAAATATTAAAGAATTTTAATGAACCAAGCATTGATATTTCTGGCCTATGGTTTTAAGCTTTTCTACCCATTTTAATGTCTGTAATCTTGCTCAATTAAGTATAGTTCCGGCCAATGGATATAGGAAAACACAATTTTCGGTGAATTTTCGCTCATTTTAATCATTATCAGGAGTCTAAAAGATTTGAAAAGCGCAAAACAGGCTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGAAAATTGCCTGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>ACATTGGTTCTATTTTTCATAGG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGAGAAAATTGCCTGAAAATTTTAATTCAAAAACATATTATTATAACCTAAATCATTTACCCAATCATATTTTGAAATTCTCCATAGTGTCCAAAAGTTTGTCAAATGTAGAAACATGCCTCGAAGTGCGACAATAACAATGCACGAGAGGAAACACTGAATATTCCCTATTTATTTTTAATCTCAAAATTTTCACTCACCGTTGGAAGGTTTTCCAGCAGAGGTCCTATGAAAAATAGAACCAATGT</canonical_amplicon>
		<polymorphic_amplicon>TGAGAAAATTGCCTGAAAATTTTAATTCAAAAACATATTATTATAACCTAAATCATTTACCCAATCATATTTTGAAATTCTCCATAGTGTCCAAAAGTTTGTCAAATGTAGAAACATGCCTCGAAGTGCRACAATAACAATGCACGAGAGGAAACACTGAATATTCCCTATTTATTTTTAATCTCAAAATTTTCACTCACCGTTGGAAGGTTTTCCAGCAGAGGTCCTATGAAAAATAGAACCAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31103</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>532453</contig_pos>
        <strand>+</strand>
        <context>TGCACGAGAG[A/G]AAACACTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCAAATGTAGAAACATGCCTCGAAGTGCGACAATAACAATGCACGAGAG</left_flank>
        <right_flank>AAACACTGAATATTCCCTATTTATTTTTAATCTCAAAATTTTCACTCACC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGAGAAAACAGGAAGAGCTCAGAAGACGAGAGGAAATGGAGCGAGAGAATGAAAAGTTCAGACAGGAATGGAATCTCTATCAGCAACTCAAAAAGCAGAAAATGGAGTTTGAGTGGAACAAATAGCTTCTGTTTTTCATATTATTTAGATTTTTCATTTTGCCAACCATCTGGTTCATTGAACTGGTAAATTCCTTCTTTCTTAATTTTTACGCAAGTCCTATTTCTTCTTATTTTCAAAAATAGTTCGCACCTCTGAATTCTTAAAACTGAAAACAACAAAGCTGCTACTGCTCCAATGAACAGTCCAGGAACCACATCCAAGCATACTGTAGATAAGAAGGTGATTGAGAAAATTGCCTGAAAATTTTAATTCAAAAACATATTATTATAACCTAAATCATTTACCCAATCATATTTTGAAATTCTCCATAGTGTCCAAAAGTTTGTCAAATGTAGAAACATGCCTCGAAGTGCGACAATAACAATGCACGAGAGGAAACACTGAATATTCCCTATTTATTTTTAATCTCAAAATTTTCACTCACCGTTGGAAGGTTTTCCAGCAGAGGTCCTATGAAAAATAGAACCAATGTTAACACCATAGCAGCAAATATCGCCGAGATCTGAAATTATAAAAAATTCTACTTATCCTTTTGTACAATAAATTATCATCTCTTTTTTTGTTGTCCCATTGTCTCTTTCATCCCTAAAAACATGACGTTTCTCTCTCTCTCTTTTTTCCAATAATTTGGTTTGAAATACTTTTGAAATATTAAAGAATTTTAATGAACCAAGCATTGATATTTCTGGCCTATGGTTTTAAGCTTTTCTACCCATTTTAATGTCTGTAATCTTGCTCAATTAAGTATAGTTCCGGCCAATGGATATAGGAAAACACAATTTTCGGTGAATTTTCGCTCATTTTAATCATTATCAGGAGTCTAAAAGATTTGAAAAGCGCAAAACAGGCTTTGATTGAAATTTTTGAATTCACAG</canonical>
            <polymorphic>GTTGAGAAAACAGGAAGAGCTCAGAAGACGAGAGGAAATGGAGCGAGAGAATGAAAAGTTCAGACAGGAATGGAATCTCTATCAGCAACTCAAAAAGCAGAAAATGGAGTTTGAGTGGAACAAATAGCTTCTGTTTTTCATATTATTTAGATTTTTCATTTTGCCAACCATCTGGTTCATTGAACTGGTAAATTCCTTCTTTCTTAATTTTTACGCAAGTCCTATTTCTTCTTATTTTCAAAAATAGTTCGCACCTCTGAATTCTTAAAACTGAAAACAACAAAGCTGCTACTGCTCCAATGAACAGTCCAGGAACCACATCCAAGCATACTGTAGATAAGAAGGTGATTGAGAAAATTGCCTGAAAATTTTAATTCAAAAACATATTATTATAACCTAAATCATTTACCCAATCATATTTTGAAATTCTCCATAGTGTCCAAAAGTTTGTCAAATGTAGAAACATGCCTCGAAGTGCGACAATAACAATGCACGAGAGRAAACACTGAATATTCCCTATTTATTTTTAATCTCAAAATTTTCACTCACCGTTGGAAGGTTTTCCAGCAGAGGTCCTATGAAAAATAGAACCAATGTTAACACCATAGCAGCAAATATCGCCGAGATCTGAAATTATAAAAAATTCTACTTATCCTTTTGTACAATAAATTATCATCTCTTTTTTTGTTGTCCCATTGTCTCTTTCATCCCTAAAAACATGACGTTTCTCTCTCTCTCTTTTTTCCAATAATTTGGTTTGAAATACTTTTGAAATATTAAAGAATTTTAATGAACCAAGCATTGATATTTCTGGCCTATGGTTTTAAGCTTTTCTACCCATTTTAATGTCTGTAATCTTGCTCAATTAAGTATAGTTCCGGCCAATGGATATAGGAAAACACAATTTTCGGTGAATTTTCGCTCATTTTAATCATTATCAGGAGTCTAAAAGATTTGAAAAGCGCAAAACAGGCTTTGATTGAAATTTTTGAATTCACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGAAAATTGCCTGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>ACATTGGTTCTATTTTTCATAGG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGAGAAAATTGCCTGAAAATTTTAATTCAAAAACATATTATTATAACCTAAATCATTTACCCAATCATATTTTGAAATTCTCCATAGTGTCCAAAAGTTTGTCAAATGTAGAAACATGCCTCGAAGTGCGACAATAACAATGCACGAGAGGAAACACTGAATATTCCCTATTTATTTTTAATCTCAAAATTTTCACTCACCGTTGGAAGGTTTTCCAGCAGAGGTCCTATGAAAAATAGAACCAATGT</canonical_amplicon>
		<polymorphic_amplicon>TGAGAAAATTGCCTGAAAATTTTAATTCAAAAACATATTATTATAACCTAAATCATTTACCCAATCATATTTTGAAATTCTCCATAGTGTCCAAAAGTTTGTCAAATGTAGAAACATGCCTCGAAGTGCGACAATAACAATGCACGAGAGRAAACACTGAATATTCCCTATTTATTTTTAATCTCAAAATTTTCACTCACCGTTGGAAGGTTTTCCAGCAGAGGTCCTATGAAAAATAGAACCAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31104</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>532520</contig_pos>
        <strand>+</strand>
        <context>AGGTTTTCCA[A/G]CAGAGGTCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTATTTATTTTTAATCTCAAAATTTTCACTCACCGTTGGAAGGTTTTCCA</left_flank>
        <right_flank>CAGAGGTCCTATGAAAAATAGAACCAATGTTAACACCATAGCAGCAAATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATGGAATCTCTATCAGCAACTCAAAAAGCAGAAAATGGAGTTTGAGTGGAACAAATAGCTTCTGTTTTTCATATTATTTAGATTTTTCATTTTGCCAACCATCTGGTTCATTGAACTGGTAAATTCCTTCTTTCTTAATTTTTACGCAAGTCCTATTTCTTCTTATTTTCAAAAATAGTTCGCACCTCTGAATTCTTAAAACTGAAAACAACAAAGCTGCTACTGCTCCAATGAACAGTCCAGGAACCACATCCAAGCATACTGTAGATAAGAAGGTGATTGAGAAAATTGCCTGAAAATTTTAATTCAAAAACATATTATTATAACCTAAATCATTTACCCAATCATATTTTGAAATTCTCCATAGTGTCCAAAAGTTTGTCAAATGTAGAAACATGCCTCGAAGTGCGACAATAACAATGCACGAGAGGAAACACTGAATATTCCCTATTTATTTTTAATCTCAAAATTTTCACTCACCGTTGGAAGGTTTTCCAGCAGAGGTCCTATGAAAAATAGAACCAATGTTAACACCATAGCAGCAAATATCGCCGAGATCTGAAATTATAAAAAATTCTACTTATCCTTTTGTACAATAAATTATCATCTCTTTTTTTGTTGTCCCATTGTCTCTTTCATCCCTAAAAACATGACGTTTCTCTCTCTCTCTTTTTTCCAATAATTTGGTTTGAAATACTTTTGAAATATTAAAGAATTTTAATGAACCAAGCATTGATATTTCTGGCCTATGGTTTTAAGCTTTTCTACCCATTTTAATGTCTGTAATCTTGCTCAATTAAGTATAGTTCCGGCCAATGGATATAGGAAAACACAATTTTCGGTGAATTTTCGCTCATTTTAATCATTATCAGGAGTCTAAAAGATTTGAAAAGCGCAAAACAGGCTTTGATTGAAATTTTTGAATTCACAGAATTTTTTGAAAATTCCTATTTTGTCAGCTATTCGCCCATTTTTTACAGGCACCTGTTTTTTCATGT</canonical>
            <polymorphic>GAATGGAATCTCTATCAGCAACTCAAAAAGCAGAAAATGGAGTTTGAGTGGAACAAATAGCTTCTGTTTTTCATATTATTTAGATTTTTCATTTTGCCAACCATCTGGTTCATTGAACTGGTAAATTCCTTCTTTCTTAATTTTTACGCAAGTCCTATTTCTTCTTATTTTCAAAAATAGTTCGCACCTCTGAATTCTTAAAACTGAAAACAACAAAGCTGCTACTGCTCCAATGAACAGTCCAGGAACCACATCCAAGCATACTGTAGATAAGAAGGTGATTGAGAAAATTGCCTGAAAATTTTAATTCAAAAACATATTATTATAACCTAAATCATTTACCCAATCATATTTTGAAATTCTCCATAGTGTCCAAAAGTTTGTCAAATGTAGAAACATGCCTCGAAGTGCGACAATAACAATGCACGAGAGGAAACACTGAATATTCCCTATTTATTTTTAATCTCAAAATTTTCACTCACCGTTGGAAGGTTTTCCARCAGAGGTCCTATGAAAAATAGAACCAATGTTAACACCATAGCAGCAAATATCGCCGAGATCTGAAATTATAAAAAATTCTACTTATCCTTTTGTACAATAAATTATCATCTCTTTTTTTGTTGTCCCATTGTCTCTTTCATCCCTAAAAACATGACGTTTCTCTCTCTCTCTTTTTTCCAATAATTTGGTTTGAAATACTTTTGAAATATTAAAGAATTTTAATGAACCAAGCATTGATATTTCTGGCCTATGGTTTTAAGCTTTTCTACCCATTTTAATGTCTGTAATCTTGCTCAATTAAGTATAGTTCCGGCCAATGGATATAGGAAAACACAATTTTCGGTGAATTTTCGCTCATTTTAATCATTATCAGGAGTCTAAAAGATTTGAAAAGCGCAAAACAGGCTTTGATTGAAATTTTTGAATTCACAGAATTTTTTGAAAATTCCTATTTTGTCAGCTATTCGCCCATTTTTTACAGGCACCTGTTTTTTCATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTGAATATTCCCTATTTATTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAGAGAGAGAGAAACGTCATGT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>CACTGAATATTCCCTATTTATTTTTAATCTCAAAATTTTCACTCACCGTTGGAAGGTTTTCCAGCAGAGGTCCTATGAAAAATAGAACCAATGTTAACACCATAGCAGCAAATATCGCCGAGATCTGAAATTATAAAAAATTCTACTTATCCTTTTGTACAATAAATTATCATCTCTTTTTTTGTTGTCCCATTGTCTCTTTCATCCCTAAAAACATGACGTTTCTCTCTCTCTC</canonical_amplicon>
		<polymorphic_amplicon>CACTGAATATTCCCTATTTATTTTTAATCTCAAAATTTTCACTCACCGTTGGAAGGTTTTCCARCAGAGGTCCTATGAAAAATAGAACCAATGTTAACACCATAGCAGCAAATATCGCCGAGATCTGAAATTATAAAAAATTCTACTTATCCTTTTGTACAATAAATTATCATCTCTTTTTTTGTTGTCCCATTGTCTCTTTCATCCCTAAAAACATGACGTTTCTCTCTCTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31105</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>532612</contig_pos>
        <strand>+</strand>
        <context>CTTATCCTTT[C/T]GTACAATAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGCAAATATCGCCGAGATCTGAAATTATAAAAAATTCTACTTATCCTTT</left_flank>
        <right_flank>GTACAATAAATTATCATCTCTTTTTTTGTTGTCCCATTGTCTCTTTCATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGCCAACCATCTGGTTCATTGAACTGGTAAATTCCTTCTTTCTTAATTTTTACGCAAGTCCTATTTCTTCTTATTTTCAAAAATAGTTCGCACCTCTGAATTCTTAAAACTGAAAACAACAAAGCTGCTACTGCTCCAATGAACAGTCCAGGAACCACATCCAAGCATACTGTAGATAAGAAGGTGATTGAGAAAATTGCCTGAAAATTTTAATTCAAAAACATATTATTATAACCTAAATCATTTACCCAATCATATTTTGAAATTCTCCATAGTGTCCAAAAGTTTGTCAAATGTAGAAACATGCCTCGAAGTGCGACAATAACAATGCACGAGAGGAAACACTGAATATTCCCTATTTATTTTTAATCTCAAAATTTTCACTCACCGTTGGAAGGTTTTCCAGCAGAGGTCCTATGAAAAATAGAACCAATGTTAACACCATAGCAGCAAATATCGCCGAGATCTGAAATTATAAAAAATTCTACTTATCCTTTTGTACAATAAATTATCATCTCTTTTTTTGTTGTCCCATTGTCTCTTTCATCCCTAAAAACATGACGTTTCTCTCTCTCTCTTTTTTCCAATAATTTGGTTTGAAATACTTTTGAAATATTAAAGAATTTTAATGAACCAAGCATTGATATTTCTGGCCTATGGTTTTAAGCTTTTCTACCCATTTTAATGTCTGTAATCTTGCTCAATTAAGTATAGTTCCGGCCAATGGATATAGGAAAACACAATTTTCGGTGAATTTTCGCTCATTTTAATCATTATCAGGAGTCTAAAAGATTTGAAAAGCGCAAAACAGGCTTTGATTGAAATTTTTGAATTCACAGAATTTTTTGAAAATTCCTATTTTGTCAGCTATTCGCCCATTTTTTACAGGCACCTGTTTTTTCATGTTTCAGTACAAAAATTGGCTGAAAAGGGGTGTTTTTCAAAAATCTACAGTCAGCTAAAGAACCGGAAATTTTCGAAAAATTATGTGAATGCGA</canonical>
            <polymorphic>TTTGCCAACCATCTGGTTCATTGAACTGGTAAATTCCTTCTTTCTTAATTTTTACGCAAGTCCTATTTCTTCTTATTTTCAAAAATAGTTCGCACCTCTGAATTCTTAAAACTGAAAACAACAAAGCTGCTACTGCTCCAATGAACAGTCCAGGAACCACATCCAAGCATACTGTAGATAAGAAGGTGATTGAGAAAATTGCCTGAAAATTTTAATTCAAAAACATATTATTATAACCTAAATCATTTACCCAATCATATTTTGAAATTCTCCATAGTGTCCAAAAGTTTGTCAAATGTAGAAACATGCCTCGAAGTGCGACAATAACAATGCACGAGAGGAAACACTGAATATTCCCTATTTATTTTTAATCTCAAAATTTTCACTCACCGTTGGAAGGTTTTCCAGCAGAGGTCCTATGAAAAATAGAACCAATGTTAACACCATAGCAGCAAATATCGCCGAGATCTGAAATTATAAAAAATTCTACTTATCCTTTYGTACAATAAATTATCATCTCTTTTTTTGTTGTCCCATTGTCTCTTTCATCCCTAAAAACATGACGTTTCTCTCTCTCTCTTTTTTCCAATAATTTGGTTTGAAATACTTTTGAAATATTAAAGAATTTTAATGAACCAAGCATTGATATTTCTGGCCTATGGTTTTAAGCTTTTCTACCCATTTTAATGTCTGTAATCTTGCTCAATTAAGTATAGTTCCGGCCAATGGATATAGGAAAACACAATTTTCGGTGAATTTTCGCTCATTTTAATCATTATCAGGAGTCTAAAAGATTTGAAAAGCGCAAAACAGGCTTTGATTGAAATTTTTGAATTCACAGAATTTTTTGAAAATTCCTATTTTGTCAGCTATTCGCCCATTTTTTACAGGCACCTGTTTTTTCATGTTTCAGTACAAAAATTGGCTGAAAAGGGGTGTTTTTCAAAAATCTACAGTCAGCTAAAGAACCGGAAATTTTCGAAAAATTATGTGAATGCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGTACA</site>
                <isoschizomers>
                    <enzyme>AauI</enzyme>
                    <enzyme>Bsp1407I</enzyme>
                    <enzyme>BsrGI</enzyme>
                    <enzyme>SspBI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 412 88</canonical_bands>
                <polymorphic_bands>912 88</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATCTCAAAATTTTCACTCACC</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAAGTATTTCAAACCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TAATCTCAAAATTTTCACTCACCGTTGGAAGGTTTTCCAGCAGAGGTCCTATGAAAAATAGAACCAATGTTAACACCATAGCAGCAAATATCGCCGAGATCTGAAATTATAAAAAATTCTACTTATCCTTTTGTACAATAAATTATCATCTCTTTTTTTGTTGTCCCATTGTCTCTTTCATCCCTAAAAACATGACGTTTCTCTCTCTCTCTTTTTTCCAATAATTTGGTTTGAAATACTTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>TAATCTCAAAATTTTCACTCACCGTTGGAAGGTTTTCCAGCAGAGGTCCTATGAAAAATAGAACCAATGTTAACACCATAGCAGCAAATATCGCCGAGATCTGAAATTATAAAAAATTCTACTTATCCTTTYGTACAATAAATTATCATCTCTTTTTTTGTTGTCCCATTGTCTCTTTCATCCCTAAAAACATGACGTTTCTCTCTCTCTCTTTTTTCCAATAATTTGGTTTGAAATACTTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31106</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>532646</contig_pos>
        <strand></strand>
        <context>TTTTGTTGTC[C/T]YATTGTCTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCTACTTATCCTTTTGTACAATAAATTATCATCTCTTTTTTTGTTGTC</left_flank>
        <right_flank>CATTGTCTCTTTCATCCCTAAAAACATGACGTTTCTCTCTCTCTCTTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTTCTTTCTTAATTTTTACGCAAGTCCTATTTCTTCTTATTTTCAAAAATAGTTCGCACCTCTGAATTCTTAAAACTGAAAACAACAAAGCTGCTACTGCTCCAATGAACAGTCCAGGAACCACATCCAAGCATACTGTAGATAAGAAGGTGATTGAGAAAATTGCCTGAAAATTTTAATTCAAAAACATATTATTATAACCTAAATCATTTACCCAATCATATTTTGAAATTCTCCATAGTGTCCAAAAGTTTGTCAAATGTAGAAACATGCCTCGAAGTGCGACAATAACAATGCACGAGAGGAAACACTGAATATTCCCTATTTATTTTTAATCTCAAAATTTTCACTCACCGTTGGAAGGTTTTCCAGCAGAGGTCCTATGAAAAATAGAACCAATGTTAACACCATAGCAGCAAATATCGCCGAGATCTGAAATTATAAAAAATTCTACTTATCCTTTTGTACAATAAATTATCATCTCTTTTTTTGTTGTCCCATTGTCTCTTTCATCCCTAAAAACATGACGTTTCTCTCTCTCTCTTTTTTCCAATAATTTGGTTTGAAATACTTTTGAAATATTAAAGAATTTTAATGAACCAAGCATTGATATTTCTGGCCTATGGTTTTAAGCTTTTCTACCCATTTTAATGTCTGTAATCTTGCTCAATTAAGTATAGTTCCGGCCAATGGATATAGGAAAACACAATTTTCGGTGAATTTTCGCTCATTTTAATCATTATCAGGAGTCTAAAAGATTTGAAAAGCGCAAAACAGGCTTTGATTGAAATTTTTGAATTCACAGAATTTTTTGAAAATTCCTATTTTGTCAGCTATTCGCCCATTTTTTACAGGCACCTGTTTTTTCATGTTTCAGTACAAAAATTGGCTGAAAAGGGGTGTTTTTCAAAAATCTACAGTCAGCTAAAGAACCGGAAATTTTCGAAAAATTATGTGAATGCGAAGTTTGCATTCTAGGCCGATTTTACACACTTTAA</canonical>
            <polymorphic>TCCTTCTTTCTTAATTTTTACGCAAGTCCTATTTCTTCTTATTTTCAAAAATAGTTCGCACCTCTGAATTCTTAAAACTGAAAACAACAAAGCTGCTACTGCTCCAATGAACAGTCCAGGAACCACATCCAAGCATACTGTAGATAAGAAGGTGATTGAGAAAATTGCCTGAAAATTTTAATTCAAAAACATATTATTATAACCTAAATCATTTACCCAATCATATTTTGAAATTCTCCATAGTGTCCAAAAGTTTGTCAAATGTAGAAACATGCCTCGAAGTGCGACAATAACAATGCACGAGAGGAAACACTGAATATTCCCTATTTATTTTTAATCTCAAAATTTTCACTCACCGTTGGAAGGTTTTCCAGCAGAGGTCCTATGAAAAATAGAACCAATGTTAACACCATAGCAGCAAATATCGCCGAGATCTGAAATTATAAAAAATTCTACTTATCCTTTTGTACAATAAATTATCATCTCTTTTTTTGTTGTCYCATTGTCTCTTTCATCCCTAAAAACATGACGTTTCTCTCTCTCTCTTTTTTCCAATAATTTGGTTTGAAATACTTTTGAAATATTAAAGAATTTTAATGAACCAAGCATTGATATTTCTGGCCTATGGTTTTAAGCTTTTCTACCCATTTTAATGTCTGTAATCTTGCTCAATTAAGTATAGTTCCGGCCAATGGATATAGGAAAACACAATTTTCGGTGAATTTTCGCTCATTTTAATCATTATCAGGAGTCTAAAAGATTTGAAAAGCGCAAAACAGGCTTTGATTGAAATTTTTGAATTCACAGAATTTTTTGAAAATTCCTATTTTGTCAGCTATTCGCCCATTTTTTACAGGCACCTGTTTTTTCATGTTTCAGTACAAAAATTGGCTGAAAAGGGGTGTTTTTCAAAAATCTACAGTCAGCTAAAGAACCGGAAATTTTCGAAAAATTATGTGAATGCGAAGTTTGCATTCTAGGCCGATTTTACACACTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATCTCAAAATTTTCACTCACC</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAAGTATTTCAAACCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TAATCTCAAAATTTTCACTCACCGTTGGAAGGTTTTCCAGCAGAGGTCCTATGAAAAATAGAACCAATGTTAACACCATAGCAGCAAATATCGCCGAGATCTGAAATTATAAAAAATTCTACTTATCCTTTTGTACAATAAATTATCATCTCTTTTTTTGTTGTCCCATTGTCTCTTTCATCCCTAAAAACATGACGTTTCTCTCTCTCTCTTTTTTCCAATAATTTGGTTTGAAATACTTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>TAATCTCAAAATTTTCACTCACCGTTGGAAGGTTTTCCAGCAGAGGTCCTATGAAAAATAGAACCAATGTTAACACCATAGCAGCAAATATCGCCGAGATCTGAAATTATAAAAAATTCTACTTATCCTTTTGTACAATAAATTATCATCTCTTTTTTTGTTGTCYCATTGTCTCTTTCATCCCTAAAAACATGACGTTTCTCTCTCTCTCTTTTTTCCAATAATTTGGTTTGAAATACTTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31107</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>532647</contig_pos>
        <strand>+</strand>
        <context>TTTGTTGTCY[C/T]ATTGTCTCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTACTTATCCTTTTGTACAATAAATTATCATCTCTTTTTTTGTTGTCC</left_flank>
        <right_flank>ATTGTCTCTTTCATCCCTAAAAACATGACGTTTCTCTCTCTCTCTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTCTTTCTTAATTTTTACGCAAGTCCTATTTCTTCTTATTTTCAAAAATAGTTCGCACCTCTGAATTCTTAAAACTGAAAACAACAAAGCTGCTACTGCTCCAATGAACAGTCCAGGAACCACATCCAAGCATACTGTAGATAAGAAGGTGATTGAGAAAATTGCCTGAAAATTTTAATTCAAAAACATATTATTATAACCTAAATCATTTACCCAATCATATTTTGAAATTCTCCATAGTGTCCAAAAGTTTGTCAAATGTAGAAACATGCCTCGAAGTGCGACAATAACAATGCACGAGAGGAAACACTGAATATTCCCTATTTATTTTTAATCTCAAAATTTTCACTCACCGTTGGAAGGTTTTCCAGCAGAGGTCCTATGAAAAATAGAACCAATGTTAACACCATAGCAGCAAATATCGCCGAGATCTGAAATTATAAAAAATTCTACTTATCCTTTTGTACAATAAATTATCATCTCTTTTTTTGTTGTCCCATTGTCTCTTTCATCCCTAAAAACATGACGTTTCTCTCTCTCTCTTTTTTCCAATAATTTGGTTTGAAATACTTTTGAAATATTAAAGAATTTTAATGAACCAAGCATTGATATTTCTGGCCTATGGTTTTAAGCTTTTCTACCCATTTTAATGTCTGTAATCTTGCTCAATTAAGTATAGTTCCGGCCAATGGATATAGGAAAACACAATTTTCGGTGAATTTTCGCTCATTTTAATCATTATCAGGAGTCTAAAAGATTTGAAAAGCGCAAAACAGGCTTTGATTGAAATTTTTGAATTCACAGAATTTTTTGAAAATTCCTATTTTGTCAGCTATTCGCCCATTTTTTACAGGCACCTGTTTTTTCATGTTTCAGTACAAAAATTGGCTGAAAAGGGGTGTTTTTCAAAAATCTACAGTCAGCTAAAGAACCGGAAATTTTCGAAAAATTATGTGAATGCGAAGTTTGCATTCTAGGCCGATTTTACACACTTTAAC</canonical>
            <polymorphic>CCTTCTTTCTTAATTTTTACGCAAGTCCTATTTCTTCTTATTTTCAAAAATAGTTCGCACCTCTGAATTCTTAAAACTGAAAACAACAAAGCTGCTACTGCTCCAATGAACAGTCCAGGAACCACATCCAAGCATACTGTAGATAAGAAGGTGATTGAGAAAATTGCCTGAAAATTTTAATTCAAAAACATATTATTATAACCTAAATCATTTACCCAATCATATTTTGAAATTCTCCATAGTGTCCAAAAGTTTGTCAAATGTAGAAACATGCCTCGAAGTGCGACAATAACAATGCACGAGAGGAAACACTGAATATTCCCTATTTATTTTTAATCTCAAAATTTTCACTCACCGTTGGAAGGTTTTCCAGCAGAGGTCCTATGAAAAATAGAACCAATGTTAACACCATAGCAGCAAATATCGCCGAGATCTGAAATTATAAAAAATTCTACTTATCCTTTTGTACAATAAATTATCATCTCTTTTTTTGTTGTCCYATTGTCTCTTTCATCCCTAAAAACATGACGTTTCTCTCTCTCTCTTTTTTCCAATAATTTGGTTTGAAATACTTTTGAAATATTAAAGAATTTTAATGAACCAAGCATTGATATTTCTGGCCTATGGTTTTAAGCTTTTCTACCCATTTTAATGTCTGTAATCTTGCTCAATTAAGTATAGTTCCGGCCAATGGATATAGGAAAACACAATTTTCGGTGAATTTTCGCTCATTTTAATCATTATCAGGAGTCTAAAAGATTTGAAAAGCGCAAAACAGGCTTTGATTGAAATTTTTGAATTCACAGAATTTTTTGAAAATTCCTATTTTGTCAGCTATTCGCCCATTTTTTACAGGCACCTGTTTTTTCATGTTTCAGTACAAAAATTGGCTGAAAAGGGGTGTTTTTCAAAAATCTACAGTCAGCTAAAGAACCGGAAATTTTCGAAAAATTATGTGAATGCGAAGTTTGCATTCTAGGCCGATTTTACACACTTTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATCTCAAAATTTTCACTCACC</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAAGTATTTCAAACCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TAATCTCAAAATTTTCACTCACCGTTGGAAGGTTTTCCAGCAGAGGTCCTATGAAAAATAGAACCAATGTTAACACCATAGCAGCAAATATCGCCGAGATCTGAAATTATAAAAAATTCTACTTATCCTTTTGTACAATAAATTATCATCTCTTTTTTTGTTGTCCCATTGTCTCTTTCATCCCTAAAAACATGACGTTTCTCTCTCTCTCTTTTTTCCAATAATTTGGTTTGAAATACTTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>TAATCTCAAAATTTTCACTCACCGTTGGAAGGTTTTCCAGCAGAGGTCCTATGAAAAATAGAACCAATGTTAACACCATAGCAGCAAATATCGCCGAGATCTGAAATTATAAAAAATTCTACTTATCCTTTTGTACAATAAATTATCATCTCTTTTTTTGTTGTCCYATTGTCTCTTTCATCCCTAAAAACATGACGTTTCTCTCTCTCTCTTTTTTCCAATAATTTGGTTTGAAATACTTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31108</snp_id>
        <super_contig>c005800764.Contig6</super_contig>
        <contig_pos>532668</contig_pos>
        <strand>+</strand>
        <context>TCATCCCTAA[A/G]AACATGACGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAAATTATCATCTCTTTTTTTGTTGTCCCATTGTCTCTTTCATCCCTAA</left_flank>
        <right_flank>AACATGACGTTTCTCTCTCTCTCTTTTTTCCAATAATTTGGTTTGAAATA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGTCCTATTTCTTCTTATTTTCAAAAATAGTTCGCACCTCTGAATTCTTAAAACTGAAAACAACAAAGCTGCTACTGCTCCAATGAACAGTCCAGGAACCACATCCAAGCATACTGTAGATAAGAAGGTGATTGAGAAAATTGCCTGAAAATTTTAATTCAAAAACATATTATTATAACCTAAATCATTTACCCAATCATATTTTGAAATTCTCCATAGTGTCCAAAAGTTTGTCAAATGTAGAAACATGCCTCGAAGTGCGACAATAACAATGCACGAGAGGAAACACTGAATATTCCCTATTTATTTTTAATCTCAAAATTTTCACTCACCGTTGGAAGGTTTTCCAGCAGAGGTCCTATGAAAAATAGAACCAATGTTAACACCATAGCAGCAAATATCGCCGAGATCTGAAATTATAAAAAATTCTACTTATCCTTTTGTACAATAAATTATCATCTCTTTTTTTGTTGTCCCATTGTCTCTTTCATCCCTAAAAACATGACGTTTCTCTCTCTCTCTTTTTTCCAATAATTTGGTTTGAAATACTTTTGAAATATTAAAGAATTTTAATGAACCAAGCATTGATATTTCTGGCCTATGGTTTTAAGCTTTTCTACCCATTTTAATGTCTGTAATCTTGCTCAATTAAGTATAGTTCCGGCCAATGGATATAGGAAAACACAATTTTCGGTGAATTTTCGCTCATTTTAATCATTATCAGGAGTCTAAAAGATTTGAAAAGCGCAAAACAGGCTTTGATTGAAATTTTTGAATTCACAGAATTTTTTGAAAATTCCTATTTTGTCAGCTATTCGCCCATTTTTTACAGGCACCTGTTTTTTCATGTTTCAGTACAAAAATTGGCTGAAAAGGGGTGTTTTTCAAAAATCTACAGTCAGCTAAAGAACCGGAAATTTTCGAAAAATTATGTGAATGCGAAGTTTGCATTCTAGGCCGATTTTACACACTTTAACCCTTTGCAAAGTGATCGGAAA</canonical>
            <polymorphic>CAAGTCCTATTTCTTCTTATTTTCAAAAATAGTTCGCACCTCTGAATTCTTAAAACTGAAAACAACAAAGCTGCTACTGCTCCAATGAACAGTCCAGGAACCACATCCAAGCATACTGTAGATAAGAAGGTGATTGAGAAAATTGCCTGAAAATTTTAATTCAAAAACATATTATTATAACCTAAATCATTTACCCAATCATATTTTGAAATTCTCCATAGTGTCCAAAAGTTTGTCAAATGTAGAAACATGCCTCGAAGTGCGACAATAACAATGCACGAGAGGAAACACTGAATATTCCCTATTTATTTTTAATCTCAAAATTTTCACTCACCGTTGGAAGGTTTTCCAGCAGAGGTCCTATGAAAAATAGAACCAATGTTAACACCATAGCAGCAAATATCGCCGAGATCTGAAATTATAAAAAATTCTACTTATCCTTTTGTACAATAAATTATCATCTCTTTTTTTGTTGTCCCATTGTCTCTTTCATCCCTAARAACATGACGTTTCTCTCTCTCTCTTTTTTCCAATAATTTGGTTTGAAATACTTTTGAAATATTAAAGAATTTTAATGAACCAAGCATTGATATTTCTGGCCTATGGTTTTAAGCTTTTCTACCCATTTTAATGTCTGTAATCTTGCTCAATTAAGTATAGTTCCGGCCAATGGATATAGGAAAACACAATTTTCGGTGAATTTTCGCTCATTTTAATCATTATCAGGAGTCTAAAAGATTTGAAAAGCGCAAAACAGGCTTTGATTGAAATTTTTGAATTCACAGAATTTTTTGAAAATTCCTATTTTGTCAGCTATTCGCCCATTTTTTACAGGCACCTGTTTTTTCATGTTTCAGTACAAAAATTGGCTGAAAAGGGGTGTTTTTCAAAAATCTACAGTCAGCTAAAGAACCGGAAATTTTCGAAAAATTATGTGAATGCGAAGTTTGCATTCTAGGCCGATTTTACACACTTTAACCCTTTGCAAAGTGATCGGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATCTCAAAATTTTCACTCACC</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAAGTATTTCAAACCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TAATCTCAAAATTTTCACTCACCGTTGGAAGGTTTTCCAGCAGAGGTCCTATGAAAAATAGAACCAATGTTAACACCATAGCAGCAAATATCGCCGAGATCTGAAATTATAAAAAATTCTACTTATCCTTTTGTACAATAAATTATCATCTCTTTTTTTGTTGTCCCATTGTCTCTTTCATCCCTAAAAACATGACGTTTCTCTCTCTCTCTTTTTTCCAATAATTTGGTTTGAAATACTTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>TAATCTCAAAATTTTCACTCACCGTTGGAAGGTTTTCCAGCAGAGGTCCTATGAAAAATAGAACCAATGTTAACACCATAGCAGCAAATATCGCCGAGATCTGAAATTATAAAAAATTCTACTTATCCTTTTGTACAATAAATTATCATCTCTTTTTTTGTTGTCCCATTGTCTCTTTCATCCCTAARAACATGACGTTTCTCTCTCTCTCTTTTTTCCAATAATTTGGTTTGAAATACTTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31109</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>44423</contig_pos>
        <strand>+</strand>
        <context>TGTTTTTCTG[A/C]WGATCTATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCACCTGAATTGAATTGGAAATCATCGGACTGACGAGAACTGTTTTTCTG</left_flank>
        <right_flank>TGATCTATTCATTTTTTAAGATACGTAGAAATCTGTTAAAGGAGGTGGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAGATTATTGTATTTCTAGGATTTATTTTATTTCCAAAAATTTCTATAAAAGATTACCGGGGTCTGGATTTTCTGAATTATTTTTGAAATTGTTTGGAATCAGAATTTCAGATTTTCAGTAATTTTGAATTTCTGGTGCCTGTTAGAGCTTTCCAAAATTGTCAGTTAAAAACCCTCGTGATTATAGCAAGCCTCATTTGCCTATTGTTTTGTTGTCTCCAACCTAGATTAATTGTCATCAAAGTAATGGTATTGGATACTAGTATATTAGATGGACTACGGCAATTCAACATGAGTATCATGCCTTGGATTTTTAACACAAACAGCAAACGTTCAGACTTTTCTAAACGATCCGGAAATCTAAATTGTTCACTTCCTTTTCACTCACATGATTCATCTTTTCGTGATTTGAGATCTACGACGTAACGATGTACTGATTTGATTCAACTCACCTGAATTGAATTGGAAATCATCGGACTGACGAGAACTGTTTTTCTGATGATCTATTCATTTTTTAAGATACGTAGAAATCTGTTAAAGGAGGTGGGACAGGAGATTTGGAAGAACGTTCCAGCTTTGCCAGCATGGTTCACGCCAGCTTGTCAGTCGGTAGCAGGGCCGCACTTCCAATACTCGCCACACAAGATCAAATTTTCGTCGAGAGGCTTATATGAACAAAATTTGAAGTCGTTTTTTTTCGTATCCCTCCACCTTAAAGGAGTATGGAAAACGCATATTGCCCAAAATAACGACAAAGTACGCTAGTTCTCTGGTGTCATAGAAATCAAAAGCATTTAAAATACAATAACAACCGATGCCGTACAAAACCATGAAATCTAAGTCTTTCTCTATTTTCGTTTCTGATCCTCTTTTCTATTCAGAACCACTTCTTTTTCATTATTGTTATAACTGTTTTGATCTCTAATCATCTAGCTCTTCTTTATTTCATTTTCCTCTCTTTTTATTCACATTGAAAAGCGCGAAAAGGTGATTGGATGA</canonical>
            <polymorphic>TTAGATTATTGTATTTCTAGGATTTATTTTATTTCCAAAAATTTCTATAAAAGATTACCGGGGTCTGGATTTTCTGAATTATTTTTGAAATTGTTTGGAATCAGAATTTCAGATTTTCAGTAATTTTGAATTTCTGGTGCCTGTTAGAGCTTTCCAAAATTGTCAGTTAAAAACCCTCGTGATTATAGCAAGCCTCATTTGCCTATTGTTTTGTTGTCTCCAACCTAGATTAATTGTCATCAAAGTAATGGTATTGGATACTAGTATATTAGATGGACTACGGCAATTCAACATGAGTATCATGCCTTGGATTTTTAACACAAACAGCAAACGTTCAGACTTTTCTAAACGATCCGGAAATCTAAATTGTTCACTTCCTTTTCACTCACATGATTCATCTTTTCGTGATTTGAGATCTACGACGTAACGATGTACTGATTTGATTCAACTCACCTGAATTGAATTGGAAATCATCGGACTGACGAGAACTGTTTTTCTGMTGATCTATTCATTTTTTAAGATACGTAGAAATCTGTTAAAGGAGGTGGGACAGGAGATTTGGAAGAACGTTCCAGCTTTGCCAGCATGGTTCACGCCAGCTTGTCAGTCGGTAGCAGGGCCGCACTTCCAATACTCGCCACACAAGATCAAATTTTCGTCGAGAGGCTTATATGAACAAAATTTGAAGTCGTTTTTTTTCGTATCCCTCCACCTTAAAGGAGTATGGAAAACGCATATTGCCCAAAATAACGACAAAGTACGCTAGTTCTCTGGTGTCATAGAAATCAAAAGCATTTAAAATACAATAACAACCGATGCCGTACAAAACCATGAAATCTAAGTCTTTCTCTATTTTCGTTTCTGATCCTCTTTTCTATTCAGAACCACTTCTTTTTCATTATTGTTATAACTGTTTTGATCTCTAATCATCTAGCTCTTCTTTATTTCATTTTCCTCTCTTTTTATTCACATTGAAAAGCGCGAAAAGGTGATTGGATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>365 226 139 119 75 28 22 18 8</canonical_bands>
                <polymorphic_bands>387 226 139 119 75 28 18 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCTACGACGTAACGATGTACT</pcr_primer_p1>
		<pcr_primer_p2>ACGAAAATTTGATCTTGTGTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GATCTACGACGTAACGATGTACTGATTTGATTCAACTCACCTGAATTGAATTGGAAATCATCGGACTGACGAGAACTGTTTTTCTGATGATCTATTCATTTTTTAAGATACGTAGAAATCTGTTAAAGGAGGTGGGACAGGAGATTTGGAAGAACGTTCCAGCTTTGCCAGCATGGTTCACGCCAGCTTGTCAGTCGGTAGCAGGGCCGCACTTCCAATACTCGCCACACAAGATCAAATTTTCGT</canonical_amplicon>
		<polymorphic_amplicon>GATCTACGACGTAACGATGTACTGATTTGATTCAACTCACCTGAATTGAATTGGAAATCATCGGACTGACGAGAACTGTTTTTCTGMTGATCTATTCATTTTTTAAGATACGTAGAAATCTGTTAAAGGAGGTGGGACAGGAGATTTGGAAGAACGTTCCAGCTTTGCCAGCATGGTTCACGCCAGCTTGTCAGTCGGTAGCAGGGCCGCACTTCCAATACTCGCCACACAAGATCAAATTTTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31110</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>44424</contig_pos>
        <strand>+</strand>
        <context>GTTTTTCTGM[A/T]GATCTATTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CACCTGAATTGAATTGGAAATCATCGGACTGACGAGAACTGTTTTTCTGA</left_flank>
        <right_flank>GATCTATTCATTTTTTAAGATACGTAGAAATCTGTTAAAGGAGGTGGGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGATTATTGTATTTCTAGGATTTATTTTATTTCCAAAAATTTCTATAAAAGATTACCGGGGTCTGGATTTTCTGAATTATTTTTGAAATTGTTTGGAATCAGAATTTCAGATTTTCAGTAATTTTGAATTTCTGGTGCCTGTTAGAGCTTTCCAAAATTGTCAGTTAAAAACCCTCGTGATTATAGCAAGCCTCATTTGCCTATTGTTTTGTTGTCTCCAACCTAGATTAATTGTCATCAAAGTAATGGTATTGGATACTAGTATATTAGATGGACTACGGCAATTCAACATGAGTATCATGCCTTGGATTTTTAACACAAACAGCAAACGTTCAGACTTTTCTAAACGATCCGGAAATCTAAATTGTTCACTTCCTTTTCACTCACATGATTCATCTTTTCGTGATTTGAGATCTACGACGTAACGATGTACTGATTTGATTCAACTCACCTGAATTGAATTGGAAATCATCGGACTGACGAGAACTGTTTTTCTGATGATCTATTCATTTTTTAAGATACGTAGAAATCTGTTAAAGGAGGTGGGACAGGAGATTTGGAAGAACGTTCCAGCTTTGCCAGCATGGTTCACGCCAGCTTGTCAGTCGGTAGCAGGGCCGCACTTCCAATACTCGCCACACAAGATCAAATTTTCGTCGAGAGGCTTATATGAACAAAATTTGAAGTCGTTTTTTTTCGTATCCCTCCACCTTAAAGGAGTATGGAAAACGCATATTGCCCAAAATAACGACAAAGTACGCTAGTTCTCTGGTGTCATAGAAATCAAAAGCATTTAAAATACAATAACAACCGATGCCGTACAAAACCATGAAATCTAAGTCTTTCTCTATTTTCGTTTCTGATCCTCTTTTCTATTCAGAACCACTTCTTTTTCATTATTGTTATAACTGTTTTGATCTCTAATCATCTAGCTCTTCTTTATTTCATTTTCCTCTCTTTTTATTCACATTGAAAAGCGCGAAAAGGTGATTGGATGAC</canonical>
            <polymorphic>TAGATTATTGTATTTCTAGGATTTATTTTATTTCCAAAAATTTCTATAAAAGATTACCGGGGTCTGGATTTTCTGAATTATTTTTGAAATTGTTTGGAATCAGAATTTCAGATTTTCAGTAATTTTGAATTTCTGGTGCCTGTTAGAGCTTTCCAAAATTGTCAGTTAAAAACCCTCGTGATTATAGCAAGCCTCATTTGCCTATTGTTTTGTTGTCTCCAACCTAGATTAATTGTCATCAAAGTAATGGTATTGGATACTAGTATATTAGATGGACTACGGCAATTCAACATGAGTATCATGCCTTGGATTTTTAACACAAACAGCAAACGTTCAGACTTTTCTAAACGATCCGGAAATCTAAATTGTTCACTTCCTTTTCACTCACATGATTCATCTTTTCGTGATTTGAGATCTACGACGTAACGATGTACTGATTTGATTCAACTCACCTGAATTGAATTGGAAATCATCGGACTGACGAGAACTGTTTTTCTGAWGATCTATTCATTTTTTAAGATACGTAGAAATCTGTTAAAGGAGGTGGGACAGGAGATTTGGAAGAACGTTCCAGCTTTGCCAGCATGGTTCACGCCAGCTTGTCAGTCGGTAGCAGGGCCGCACTTCCAATACTCGCCACACAAGATCAAATTTTCGTCGAGAGGCTTATATGAACAAAATTTGAAGTCGTTTTTTTTCGTATCCCTCCACCTTAAAGGAGTATGGAAAACGCATATTGCCCAAAATAACGACAAAGTACGCTAGTTCTCTGGTGTCATAGAAATCAAAAGCATTTAAAATACAATAACAACCGATGCCGTACAAAACCATGAAATCTAAGTCTTTCTCTATTTTCGTTTCTGATCCTCTTTTCTATTCAGAACCACTTCTTTTTCATTATTGTTATAACTGTTTTGATCTCTAATCATCTAGCTCTTCTTTATTTCATTTTCCTCTCTTTTTATTCACATTGAAAAGCGCGAAAAGGTGATTGGATGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCTACGACGTAACGATGTACT</pcr_primer_p1>
		<pcr_primer_p2>ACGAAAATTTGATCTTGTGTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GATCTACGACGTAACGATGTACTGATTTGATTCAACTCACCTGAATTGAATTGGAAATCATCGGACTGACGAGAACTGTTTTTCTGATGATCTATTCATTTTTTAAGATACGTAGAAATCTGTTAAAGGAGGTGGGACAGGAGATTTGGAAGAACGTTCCAGCTTTGCCAGCATGGTTCACGCCAGCTTGTCAGTCGGTAGCAGGGCCGCACTTCCAATACTCGCCACACAAGATCAAATTTTCGT</canonical_amplicon>
		<polymorphic_amplicon>GATCTACGACGTAACGATGTACTGATTTGATTCAACTCACCTGAATTGAATTGGAAATCATCGGACTGACGAGAACTGTTTTTCTGAWGATCTATTCATTTTTTAAGATACGTAGAAATCTGTTAAAGGAGGTGGGACAGGAGATTTGGAAGAACGTTCCAGCTTTGCCAGCATGGTTCACGCCAGCTTGTCAGTCGGTAGCAGGGCCGCACTTCCAATACTCGCCACACAAGATCAAATTTTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31111</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>49589</contig_pos>
        <strand></strand>
        <context>acaaaatcca[A/C]aattcggggg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGAGGGTACAACAATTCGGGGTATAAAGTGATTTGGAGGTACAAAATCCA</left_flank>
        <right_flank>AATTCGGGGGCACAAAATTCGAATTTTTGTGGATATCTCGTACTCCCGAC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAGTGCCATATGACTGATATCCTCTCAACTCACTCTTTGGGAACCTACAATTTGGATCTCAAGAAGAATGTCACCATCGACTCTTTTGAGGTAAATCAGTTTTAATTGAAAATCAGGAATTATGAGTGATTTTCAGTTAACTGATTCCTGGAGAGACGATGCTGGATTCATTGTCACTGATAGAAACGTGTACATCCAGGGAACCTACGACGTCGCCAAGCTTCTTCCAACTCTCCTTCCATCTTCTCGTGAGTAACATGAACTAGAAGGGAGAAAAAAATCCATCTCATAGTTTTCTTTAGAATAAATATCGACTAAAACAGATGTGATTATACTTGACGAGTATTACAAAATAATACTAATTGGAAATTTTTATCTTGTCTATGAACAAATTTACAAACCAATAGCCGCCCGAGCTACGCGGTCGATCCTTTTGGCACGTAGTTCGGAGGGTACAACAATTCGGGGTATAAAGTGATTTGGAGGTACAAAATCCAAAATTCGGGGGCACAAAATTCGAATTTTTGTGGATATCTCGTACTCCCGACTTGAGTATTTTGTGCCCCTAAAATGCTTTGAACCCATAATGACCCCAAAAGTTTTGAACTATTTGCCGATATTTTTGGCCTCCTGTAACTTTGTTCATAGGCAAGTCATCATTTGAGTCTATTTATTTTGAAAACCTGAAATCAGTAATCTGAAAAGAAATGGTGTTTTGAGAAATCTTTACAAAAAAATTATTTCCAGAAAAAGTGACTCCATACGCTAAAGCTGACTTTGACCTTGTCGCTGACTTTGACTCAACAGTCTGCGGATTCTCTCGTGATGCCTATCTCACTCTTCTTCTCGCTTCCTCATCCACTATCCTTCTTGCCAAATCCTCAGGATCAATTGATGGAATCATCGTCGGGAACGGAGCTGACAGAATCAACCTGATCTACGCTGAAACCATCGAAATTGCTCATGCTCTTCTGAAGTCATACGTGGAGAAGACGAAA</canonical>
            <polymorphic>CTGAGTGCCATATGACTGATATCCTCTCAACTCACTCTTTGGGAACCTACAATTTGGATCTCAAGAAGAATGTCACCATCGACTCTTTTGAGGTAAATCAGTTTTAATTGAAAATCAGGAATTATGAGTGATTTTCAGTTAACTGATTCCTGGAGAGACGATGCTGGATTCATTGTCACTGATAGAAACGTGTACATCCAGGGAACCTACGACGTCGCCAAGCTTCTTCCAACTCTCCTTCCATCTTCTCGTGAGTAACATGAACTAGAAGGGAGAAAAAAATCCATCTCATAGTTTTCTTTAGAATAAATATCGACTAAAACAGATGTGATTATACTTGACGAGTATTACAAAATAATACTAATTGGAAATTTTTATCTTGTCTATGAACAAATTTACAAACCAATAGCCGCCCGAGCTACGCGGTCGATCCTTTTGGCACGTAGTTCGGAGGGTACAACAATTCGGGGTATAAAGTGATTTGGAGGTACAAAATCCAMAATTCGGGGGCACAAAATTCGAATTTTTGTGGATATCTCGTACTCCCGACTTGAGTATTTTGTGCCCCTAAAATGCTTTGAACCCATAATGACCCCAAAAGTTTTGAACTATTTGCCGATATTTTTGGCCTCCTGTAACTTTGTTCATAGGCAAGTCATCATTTGAGTCTATTTATTTTGAAAACCTGAAATCAGTAATCTGAAAAGAAATGGTGTTTTGAGAAATCTTTACAAAAAAATTATTTCCAGAAAAAGTGACTCCATACGCTAAAGCTGACTTTGACCTTGTCGCTGACTTTGACTCAACAGTCTGCGGATTCTCTCGTGATGCCTATCTCACTCTTCTTCTCGCTTCCTCATCCACTATCCTTCTTGCCAAATCCTCAGGATCAATTGATGGAATCATCGTCGGGAACGGAGCTGACAGAATCAACCTGATCTACGCTGAAACCATCGAAATTGCTCATGCTCTTCTGAAGTCATACGTGGAGAAGACGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>479 369 108 23 15 6</canonical_bands>
                <polymorphic_bands>479 369 123 23 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGAACTAGAAGGGAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATATCGGCAAATAGTTCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>364</pcr_amplicon_size>
		<canonical_amplicon>CATGAACTAGAAGGGAGAAAAAAATCCATCTCATAGTTTTCTTTAGAATAAATATCGACTAAAACAGATGTGATTATACTTGACGAGTATTACAAAATAATACTAATTGGAAATTTTTATCTTGTCTATGAACAAATTTACAAACCAATAGCCGCCCGAGCTACGCGGTCGATCCTTTTGGCACGTAGTTCGGAGGGTACAACAATTCGGGGTATAAAGTGATTTGGAGGTACAAAATCCAAAATTCGGGGGCACAAAATTCGAATTTTTGTGGATATCTCGTACTCCCGACTTGAGTATTTTGTGCCCCTAAAATGCTTTGAACCCATAATGACCCCAAAAGTTTTGAACTATTTGCCGATAT</canonical_amplicon>
		<polymorphic_amplicon>CATGAACTAGAAGGGAGAAAAAAATCCATCTCATAGTTTTCTTTAGAATAAATATCGACTAAAACAGATGTGATTATACTTGACGAGTATTACAAAATAATACTAATTGGAAATTTTTATCTTGTCTATGAACAAATTTACAAACCAATAGCCGCCCGAGCTACGCGGTCGATCCTTTTGGCACGTAGTTCGGAGGGTACAACAATTCGGGGTATAAAGTGATTTGGAGGTACAAAATCCAMAATTCGGGGGCACAAAATTCGAATTTTTGTGGATATCTCGTACTCCCGACTTGAGTATTTTGTGCCCCTAAAATGCTTTGAACCCATAATGACCCCAAAAGTTTTGAACTATTTGCCGATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31112</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>49687</contig_pos>
        <strand>+</strand>
        <context>AATGACCCCA[A/G]AAGTTTTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACTTGAGTATTTTGTGCCCCTAAAATGCTTTGAACCCATAATGACCCCA</left_flank>
        <right_flank>AAGTTTTGAACTATTTGCCGATATTTTTGGCCTCCTGTAACTTTGTTCAT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTTTTAATTGAAAATCAGGAATTATGAGTGATTTTCAGTTAACTGATTCCTGGAGAGACGATGCTGGATTCATTGTCACTGATAGAAACGTGTACATCCAGGGAACCTACGACGTCGCCAAGCTTCTTCCAACTCTCCTTCCATCTTCTCGTGAGTAACATGAACTAGAAGGGAGAAAAAAATCCATCTCATAGTTTTCTTTAGAATAAATATCGACTAAAACAGATGTGATTATACTTGACGAGTATTACAAAATAATACTAATTGGAAATTTTTATCTTGTCTATGAACAAATTTACAAACCAATAGCCGCCCGAGCTACGCGGTCGATCCTTTTGGCACGTAGTTCGGAGGGTACAACAATTCGGGGTATAAAGTGATTTGGAGGTACAAAATCCAAAATTCGGGGGCACAAAATTCGAATTTTTGTGGATATCTCGTACTCCCGACTTGAGTATTTTGTGCCCCTAAAATGCTTTGAACCCATAATGACCCCAAAAGTTTTGAACTATTTGCCGATATTTTTGGCCTCCTGTAACTTTGTTCATAGGCAAGTCATCATTTGAGTCTATTTATTTTGAAAACCTGAAATCAGTAATCTGAAAAGAAATGGTGTTTTGAGAAATCTTTACAAAAAAATTATTTCCAGAAAAAGTGACTCCATACGCTAAAGCTGACTTTGACCTTGTCGCTGACTTTGACTCAACAGTCTGCGGATTCTCTCGTGATGCCTATCTCACTCTTCTTCTCGCTTCCTCATCCACTATCCTTCTTGCCAAATCCTCAGGATCAATTGATGGAATCATCGTCGGGAACGGAGCTGACAGAATCAACCTGATCTACGCTGAAACCATCGAAATTGCTCATGCTCTTCTGAAGTCATACGTGGAGAAGACGAAAGTGAAACAAGTCACTCTTTTCACGGTTCAAGGCGTCTGGGAATGCGAACCAACGAAGAAACGGGCGGTACACAGACGACACACTCGAGCTGTTCCTTC</canonical>
            <polymorphic>CAGTTTTAATTGAAAATCAGGAATTATGAGTGATTTTCAGTTAACTGATTCCTGGAGAGACGATGCTGGATTCATTGTCACTGATAGAAACGTGTACATCCAGGGAACCTACGACGTCGCCAAGCTTCTTCCAACTCTCCTTCCATCTTCTCGTGAGTAACATGAACTAGAAGGGAGAAAAAAATCCATCTCATAGTTTTCTTTAGAATAAATATCGACTAAAACAGATGTGATTATACTTGACGAGTATTACAAAATAATACTAATTGGAAATTTTTATCTTGTCTATGAACAAATTTACAAACCAATAGCCGCCCGAGCTACGCGGTCGATCCTTTTGGCACGTAGTTCGGAGGGTACAACAATTCGGGGTATAAAGTGATTTGGAGGTACAAAATCCAAAATTCGGGGGCACAAAATTCGAATTTTTGTGGATATCTCGTACTCCCGACTTGAGTATTTTGTGCCCCTAAAATGCTTTGAACCCATAATGACCCCARAAGTTTTGAACTATTTGCCGATATTTTTGGCCTCCTGTAACTTTGTTCATAGGCAAGTCATCATTTGAGTCTATTTATTTTGAAAACCTGAAATCAGTAATCTGAAAAGAAATGGTGTTTTGAGAAATCTTTACAAAAAAATTATTTCCAGAAAAAGTGACTCCATACGCTAAAGCTGACTTTGACCTTGTCGCTGACTTTGACTCAACAGTCTGCGGATTCTCTCGTGATGCCTATCTCACTCTTCTTCTCGCTTCCTCATCCACTATCCTTCTTGCCAAATCCTCAGGATCAATTGATGGAATCATCGTCGGGAACGGAGCTGACAGAATCAACCTGATCTACGCTGAAACCATCGAAATTGCTCATGCTCTTCTGAAGTCATACGTGGAGAAGACGAAAGTGAAACAAGTCACTCTTTTCACGGTTCAAGGCGTCTGGGAATGCGAACCAACGAAGAAACGGGCGGTACACAGACGACACACTCGAGCTGTTCCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGAACTAGAAGGGAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTGCCTATGAACAAAGTTACAG</pcr_primer_p2>
		<pcr_amplicon_size>397</pcr_amplicon_size>
		<canonical_amplicon>CATGAACTAGAAGGGAGAAAAAAATCCATCTCATAGTTTTCTTTAGAATAAATATCGACTAAAACAGATGTGATTATACTTGACGAGTATTACAAAATAATACTAATTGGAAATTTTTATCTTGTCTATGAACAAATTTACAAACCAATAGCCGCCCGAGCTACGCGGTCGATCCTTTTGGCACGTAGTTCGGAGGGTACAACAATTCGGGGTATAAAGTGATTTGGAGGTACAAAATCCAAAATTCGGGGGCACAAAATTCGAATTTTTGTGGATATCTCGTACTCCCGACTTGAGTATTTTGTGCCCCTAAAATGCTTTGAACCCATAATGACCCCAAAAGTTTTGAACTATTTGCCGATATTTTTGGCCTCCTGTAACTTTGTTCATAGGCAAG</canonical_amplicon>
		<polymorphic_amplicon>CATGAACTAGAAGGGAGAAAAAAATCCATCTCATAGTTTTCTTTAGAATAAATATCGACTAAAACAGATGTGATTATACTTGACGAGTATTACAAAATAATACTAATTGGAAATTTTTATCTTGTCTATGAACAAATTTACAAACCAATAGCCGCCCGAGCTACGCGGTCGATCCTTTTGGCACGTAGTTCGGAGGGTACAACAATTCGGGGTATAAAGTGATTTGGAGGTACAAAATCCAAAATTCGGGGGCACAAAATTCGAATTTTTGTGGATATCTCGTACTCCCGACTTGAGTATTTTGTGCCCCTAAAATGCTTTGAACCCATAATGACCCCARAAGTTTTGAACTATTTGCCGATATTTTTGGCCTCCTGTAACTTTGTTCATAGGCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31113</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>72986</contig_pos>
        <strand>+</strand>
        <context>CAGCAGTCTT[A/G]TAGTCGTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGCTGTCAACTAGCAGTCATTTACCAGTTCGCGCCTCTTCAGCAGTCTT</left_flank>
        <right_flank>TAGTCGTTTTTCGGTAGTGCCCTTTTTCCTGTTAATTTAAAAGATCTTTA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAATTGAGACGTGTTGAAGATGACATTATTGAATAAAATATTGAGCATGATCTACAGTAATCCAGAACCACGTGGTTCCCTCAGTGGGATATCAGCAGACTATTAAGCGACGATAGGCACATGACACTCCTTTTGTTCCCATTGTTGTTGGAGCTTTGGCCGCATTTTATAGTTTTCAGTACAAACATTTTCGCAACTTGGCTGGTGTAATTCGTGTAGATTGTGGAGTTTTTCGGTCGTTTTATGTTCAACACTGATAGCTTTAGATCCTCTAAATTTTGAACTTGTTTTTGAGAAAGTGTGACATGAAAAATTAAATTTCATTATTATTTTATGAATGCATTAAATATTGTTTTCCGGCTGGTTTCCAATAAACTTTCAAGTCGGTTTTCCAAGAGATTCCGATTATCCGTCAACAGTCCGTCGACGGTCCGTCGGTTCTCCTTCGGCTGTCAACTAGCAGTCATTTACCAGTTCGCGCCTCTTCAGCAGTCTTATAGTCGTTTTTCGGTAGTGCCCTTTTTCCTGTTAATTTAAAAGATCTTTAAATTACTTGATTTTTAAAGTCCTGAAATAGTTTGTTTATGCTTTCAAGTCTCTTTTAACATTCTGACATTGAACTGTTTCCCGTAATAGAAGGCCCCCACCCTAACTTTCCCATTGTTATTAGAGCCAATTTATCTCGGTTCCTGTCAAAGAAATGAAAATTTTGTTAACTGACAAATTGTTTATCATAAAATCATAAGTTTTTTTGTCAGTTGACATATTTTTGATATCTTGCATAGGAACCGAGATAATTGAACTCAAACTTATCAGTGTGAAAGCCAGTCTAATACAAGTTTTTACGGTATATTGTTTCCTGTCGAAGGTATTATGCTCGTATGCAAACTACGGAGCTCTGAAAATCTGGTGGACGACCGAACTACCGTAATTAGTAAATTGGAAAAATTTCGTTACGGGAACCATTGGCCACGCCCACAAGCTTGTCTCTTCTACA</canonical>
            <polymorphic>TTAAAATTGAGACGTGTTGAAGATGACATTATTGAATAAAATATTGAGCATGATCTACAGTAATCCAGAACCACGTGGTTCCCTCAGTGGGATATCAGCAGACTATTAAGCGACGATAGGCACATGACACTCCTTTTGTTCCCATTGTTGTTGGAGCTTTGGCCGCATTTTATAGTTTTCAGTACAAACATTTTCGCAACTTGGCTGGTGTAATTCGTGTAGATTGTGGAGTTTTTCGGTCGTTTTATGTTCAACACTGATAGCTTTAGATCCTCTAAATTTTGAACTTGTTTTTGAGAAAGTGTGACATGAAAAATTAAATTTCATTATTATTTTATGAATGCATTAAATATTGTTTTCCGGCTGGTTTCCAATAAACTTTCAAGTCGGTTTTCCAAGAGATTCCGATTATCCGTCAACAGTCCGTCGACGGTCCGTCGGTTCTCCTTCGGCTGTCAACTAGCAGTCATTTACCAGTTCGCGCCTCTTCAGCAGTCTTRTAGTCGTTTTTCGGTAGTGCCCTTTTTCCTGTTAATTTAAAAGATCTTTAAATTACTTGATTTTTAAAGTCCTGAAATAGTTTGTTTATGCTTTCAAGTCTCTTTTAACATTCTGACATTGAACTGTTTCCCGTAATAGAAGGCCCCCACCCTAACTTTCCCATTGTTATTAGAGCCAATTTATCTCGGTTCCTGTCAAAGAAATGAAAATTTTGTTAACTGACAAATTGTTTATCATAAAATCATAAGTTTTTTTGTCAGTTGACATATTTTTGATATCTTGCATAGGAACCGAGATAATTGAACTCAAACTTATCAGTGTGAAAGCCAGTCTAATACAAGTTTTTACGGTATATTGTTTCCTGTCGAAGGTATTATGCTCGTATGCAAACTACGGAGCTCTGAAAATCTGGTGGACGACCGAACTACCGTAATTAGTAAATTGGAAAAATTTCGTTACGGGAACCATTGGCCACGCCCACAAGCTTGTCTCTTCTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAAACTTTCAAGTCGGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTCAATGTCAGAATGTTAAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATAAACTTTCAAGTCGGTTTTCCAAGAGATTCCGATTATCCGTCAACAGTCCGTCGACGGTCCGTCGGTTCTCCTTCGGCTGTCAACTAGCAGTCATTTACCAGTTCGCGCCTCTTCAGCAGTCTTATAGTCGTTTTTCGGTAGTGCCCTTTTTCCTGTTAATTTAAAAGATCTTTAAATTACTTGATTTTTAAAGTCCTGAAATAGTTTGTTTATGCTTTCAAGTCTCTTTTAACATTCTGACATTGAA</canonical_amplicon>
		<polymorphic_amplicon>AATAAACTTTCAAGTCGGTTTTCCAAGAGATTCCGATTATCCGTCAACAGTCCGTCGACGGTCCGTCGGTTCTCCTTCGGCTGTCAACTAGCAGTCATTTACCAGTTCGCGCCTCTTCAGCAGTCTTRTAGTCGTTTTTCGGTAGTGCCCTTTTTCCTGTTAATTTAAAAGATCTTTAAATTACTTGATTTTTAAAGTCCTGAAATAGTTTGTTTATGCTTTCAAGTCTCTTTTAACATTCTGACATTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31114</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>80478</contig_pos>
        <strand>+</strand>
        <context>GAGAGAAAAT[G/T]GATGAATAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGGAAAAGAGACATATTGAATTATTCGATTTCGTTTTTAGAGAGAAAAT</left_flank>
        <right_flank>GATGAATAGCGTTTTGATGAGAAGATGAACTCAAGTTTCTTTTTTTTGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAAAAATTGAGCCAAATGTTCAGAATGAGTTGTTCGTTCGCTAGGAAATTACAAATTTCACCTGTCAAATTCAAATTAGGTTTTTTCTTCCGAAAAATTTCTCAAGTGTTATACATTCGTTTCAGGAAGCAGCCAGGATGACTCTCGAAGTGCTAAATCAACGAACTCAAGTATCAGAAGAAAGTCGGATTCTATCAAAAGCGCAGGTTAATTTCTTATCATTTCCACTATTTTTCTCAAGTCATAAAAGTAACAACAAAAAAAACACAAAATCGATTACTTGCGGGGGTTTTCTCTCTTATTGTTTTGTTTGGTGGTATTTGATGGAATTCCAAAAAAAATTGTGTCACAAAAAAATCCGAATGAAATTTATAGCCTCTGGCGTTTTTTCTTCGGTTACTTTACTGTGGTCTTTCTTCTTCTCTTTTTGGATCTCTTCTTTTTTAAAAGGAAAAGAGACATATTGAATTATTCGATTTCGTTTTTAGAGAGAAAATGGATGAATAGCGTTTTGATGAGAAGATGAACTCAAGTTTCTTTTTTTTGCGTGGGTAGACTTTTTTTTGAAAAATGACGACATCTACTGTTTTGAAAGATCAGGATATTTTTATTTCTGAATGTTCTAATCCCATTTTGTAGGCATTTATGTAAAAGTTATATTTGAGTCTAATCCAACTCAACGGATCTATATCTTTATGATTTGAAGTGAAAATTCTGGAAAAGGAGAATAAAAACAAAAACAAAATAAAAATTGTTTCCCTTTCCCTAAAGACAACTTCCAGTTTTCTAAAATCATGTCAAGTGTGAAAATCGAATAGTCCATTCTATTTTGAACTTCAGGAGTTAACAGCTCAATGATGCGTGTGAATTATTTTCTTGAGATTCTCCAAAAAATCTTCCAGTTTTCCAAAATCGGCTTATCAAATGCTCGCATCCATGATCGGAGAGCCTGCGATATTTTTAGACGATCATAGAGCGTTCTCATCCACTTTTCGTTT</canonical>
            <polymorphic>ATAAAAAATTGAGCCAAATGTTCAGAATGAGTTGTTCGTTCGCTAGGAAATTACAAATTTCACCTGTCAAATTCAAATTAGGTTTTTTCTTCCGAAAAATTTCTCAAGTGTTATACATTCGTTTCAGGAAGCAGCCAGGATGACTCTCGAAGTGCTAAATCAACGAACTCAAGTATCAGAAGAAAGTCGGATTCTATCAAAAGCGCAGGTTAATTTCTTATCATTTCCACTATTTTTCTCAAGTCATAAAAGTAACAACAAAAAAAACACAAAATCGATTACTTGCGGGGGTTTTCTCTCTTATTGTTTTGTTTGGTGGTATTTGATGGAATTCCAAAAAAAATTGTGTCACAAAAAAATCCGAATGAAATTTATAGCCTCTGGCGTTTTTTCTTCGGTTACTTTACTGTGGTCTTTCTTCTTCTCTTTTTGGATCTCTTCTTTTTTAAAAGGAAAAGAGACATATTGAATTATTCGATTTCGTTTTTAGAGAGAAAATKGATGAATAGCGTTTTGATGAGAAGATGAACTCAAGTTTCTTTTTTTTGCGTGGGTAGACTTTTTTTTGAAAAATGACGACATCTACTGTTTTGAAAGATCAGGATATTTTTATTTCTGAATGTTCTAATCCCATTTTGTAGGCATTTATGTAAAAGTTATATTTGAGTCTAATCCAACTCAACGGATCTATATCTTTATGATTTGAAGTGAAAATTCTGGAAAAGGAGAATAAAAACAAAAACAAAATAAAAATTGTTTCCCTTTCCCTAAAGACAACTTCCAGTTTTCTAAAATCATGTCAAGTGTGAAAATCGAATAGTCCATTCTATTTTGAACTTCAGGAGTTAACAGCTCAATGATGCGTGTGAATTATTTTCTTGAGATTCTCCAAAAAATCTTCCAGTTTTCCAAAATCGGCTTATCAAATGCTCGCATCCATGATCGGAGAGCCTGCGATATTTTTAGACGATCATAGAGCGTTCTCATCCACTTTTCGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCCGAATGAAATTTATAGC</pcr_primer_p1>
		<pcr_primer_p2>TCCTGATCTTTCAAAACAGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAATCCGAATGAAATTTATAGCCTCTGGCGTTTTTTCTTCGGTTACTTTACTGTGGTCTTTCTTCTTCTCTTTTTGGATCTCTTCTTTTTTAAAAGGAAAAGAGACATATTGAATTATTCGATTTCGTTTTTAGAGAGAAAATGGATGAATAGCGTTTTGATGAGAAGATGAACTCAAGTTTCTTTTTTTTGCGTGGGTAGACTTTTTTTTGAAAAATGACGACATCTACTGTTTTGAAAGATCAGGA</canonical_amplicon>
		<polymorphic_amplicon>AAAATCCGAATGAAATTTATAGCCTCTGGCGTTTTTTCTTCGGTTACTTTACTGTGGTCTTTCTTCTTCTCTTTTTGGATCTCTTCTTTTTTAAAAGGAAAAGAGACATATTGAATTATTCGATTTCGTTTTTAGAGAGAAAATKGATGAATAGCGTTTTGATGAGAAGATGAACTCAAGTTTCTTTTTTTTGCGTGGGTAGACTTTTTTTTGAAAAATGACGACATCTACTGTTTTGAAAGATCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31115</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>91132</contig_pos>
        <strand>+</strand>
        <context>AGAAAAGAAG[A/T]CATTAAAAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGCTGAGCTTTTCTCTGAAACAAGTAGGAAAGTGAAACAAAGAAAAGAAG</left_flank>
        <right_flank>CATTAAAAGTTAAAACGAAAGAGAGGAAAGGTACACAACCGTCCAAGTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGAGAACGGAACAGACTTCCATTCATCACGAGAGCATTTTCGATGCTCTCAGCAGAAGCAAACTCGATGTATGCGAAACTGAAAATTGGAAAAATGAACGATATATTCAGACGGAATAGAAAGACCAGTCTGAACACTCAAACCAAACTCACTTCTTCTGTTTTTTGGTGAACTTGTCCTTTGGAATAGTGGTTCGAATGATTTCACCGCATCCTTTGAAGTGTTCTTCGATATCTTCGATCGAAGATCCAAAGTCTACGTTACCGATGAACACCGATCTGGAATCGATCTCCTTCTGTTCTTCGGCAGTTGGTGGAATCATTTTCGTTGGCATTTCCATCTTTTCTGCAATCTCATTTTGAATCTCTCGGAGAGCGGCAGCTTCAGCCTCGATCTCCAACTCCATTGAATTACAGTTGTTGTCGGATTGAGCCATTGCTGTTGAGTGTGCTGAGCTTTTCTCTGAAACAAGTAGGAAAGTGAAACAAAGAAAAGAAGACATTAAAAGTTAAAACGAAAGAGAGGAAAGGTACACAACCGTCCAAGTCGAGAAACAAAATGAGAAGGAATGGGAGAATAAATGGATCTTCCCACACCGATGCTACATCCAGGTGTGCCCATAATCTCCTTCACCTCGTCTTGCAGATCAAAGAAACCCATCTTCACATGGTCACCGTTTATGGGAAAAAAAGGAAAGAGCAGAACAGTAGTGTATCGTGTGATTTCTAAAATCAATGGCTGTCGGCTTATAACTTCTGGTCAAAAGTTGATGGGGGTTCGGCTTTTGGAAGTTGGCCAGGTTCTGGTCGGAATTTGGCTAAAAACGGCTGTATAGCGAGCCATTGTCACATTTTGATAGGTTATTGAAAGTTGCAATAAAAAATTAGATCGGAACCTTATCATAAATTTGTTGGAGTTTAGTAGCGGTCTTATCCGGAATCTGACCCACATGTTACCAGAAGTTATCAACGACGCCCGCGTACATATCAAATTTAGGAC</canonical>
            <polymorphic>GCGAGAACGGAACAGACTTCCATTCATCACGAGAGCATTTTCGATGCTCTCAGCAGAAGCAAACTCGATGTATGCGAAACTGAAAATTGGAAAAATGAACGATATATTCAGACGGAATAGAAAGACCAGTCTGAACACTCAAACCAAACTCACTTCTTCTGTTTTTTGGTGAACTTGTCCTTTGGAATAGTGGTTCGAATGATTTCACCGCATCCTTTGAAGTGTTCTTCGATATCTTCGATCGAAGATCCAAAGTCTACGTTACCGATGAACACCGATCTGGAATCGATCTCCTTCTGTTCTTCGGCAGTTGGTGGAATCATTTTCGTTGGCATTTCCATCTTTTCTGCAATCTCATTTTGAATCTCTCGGAGAGCGGCAGCTTCAGCCTCGATCTCCAACTCCATTGAATTACAGTTGTTGTCGGATTGAGCCATTGCTGTTGAGTGTGCTGAGCTTTTCTCTGAAACAAGTAGGAAAGTGAAACAAAGAAAAGAAGWCATTAAAAGTTAAAACGAAAGAGAGGAAAGGTACACAACCGTCCAAGTCGAGAAACAAAATGAGAAGGAATGGGAGAATAAATGGATCTTCCCACACCGATGCTACATCCAGGTGTGCCCATAATCTCCTTCACCTCGTCTTGCAGATCAAAGAAACCCATCTTCACATGGTCACCGTTTATGGGAAAAAAAGGAAAGAGCAGAACAGTAGTGTATCGTGTGATTTCTAAAATCAATGGCTGTCGGCTTATAACTTCTGGTCAAAAGTTGATGGGGGTTCGGCTTTTGGAAGTTGGCCAGGTTCTGGTCGGAATTTGGCTAAAAACGGCTGTATAGCGAGCCATTGTCACATTTTGATAGGTTATTGAAAGTTGCAATAAAAAATTAGATCGGAACCTTATCATAAATTTGTTGGAGTTTAGTAGCGGTCTTATCCGGAATCTGACCCACATGTTACCAGAAGTTATCAACGACGCCCGCGTACATATCAAATTTAGGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTTTTCTGCAATCTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>AGATCCATTTATTCTCCCATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTTTTCTGCAATCTCATTTTGAATCTCTCGGAGAGCGGCAGCTTCAGCCTCGATCTCCAACTCCATTGAATTACAGTTGTTGTCGGATTGAGCCATTGCTGTTGAGTGTGCTGAGCTTTTCTCTGAAACAAGTAGGAAAGTGAAACAAAGAAAAGAAGACATTAAAAGTTAAAACGAAAGAGAGGAAAGGTACACAACCGTCCAAGTCGAGAAACAAAATGAGAAGGAATGGGAGAATAAATGGATCT</canonical_amplicon>
		<polymorphic_amplicon>ATCTTTTCTGCAATCTCATTTTGAATCTCTCGGAGAGCGGCAGCTTCAGCCTCGATCTCCAACTCCATTGAATTACAGTTGTTGTCGGATTGAGCCATTGCTGTTGAGTGTGCTGAGCTTTTCTCTGAAACAAGTAGGAAAGTGAAACAAAGAAAAGAAGWCATTAAAAGTTAAAACGAAAGAGAGGAAAGGTACACAACCGTCCAAGTCGAGAAACAAAATGAGAAGGAATGGGAGAATAAATGGATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31116</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>91532</contig_pos>
        <strand></strand>
        <context>tcggaacctt[A/G]tcataaattt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTTTGATAGGTTATTGAAAGTTGCAATAAAAAATTAGATCGGAACCTT</left_flank>
        <right_flank>TCATAAATTTGTTGGAGTTTAGTAGCGGTCTTATCCGGAATCTGACCCAC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCCATTGAATTACAGTTGTTGTCGGATTGAGCCATTGCTGTTGAGTGTGCTGAGCTTTTCTCTGAAACAAGTAGGAAAGTGAAACAAAGAAAAGAAGACATTAAAAGTTAAAACGAAAGAGAGGAAAGGTACACAACCGTCCAAGTCGAGAAACAAAATGAGAAGGAATGGGAGAATAAATGGATCTTCCCACACCGATGCTACATCCAGGTGTGCCCATAATCTCCTTCACCTCGTCTTGCAGATCAAAGAAACCCATCTTCACATGGTCACCGTTTATGGGAAAAAAAGGAAAGAGCAGAACAGTAGTGTATCGTGTGATTTCTAAAATCAATGGCTGTCGGCTTATAACTTCTGGTCAAAAGTTGATGGGGGTTCGGCTTTTGGAAGTTGGCCAGGTTCTGGTCGGAATTTGGCTAAAAACGGCTGTATAGCGAGCCATTGTCACATTTTGATAGGTTATTGAAAGTTGCAATAAAAAATTAGATCGGAACCTTATCATAAATTTGTTGGAGTTTAGTAGCGGTCTTATCCGGAATCTGACCCACATGTTACCAGAAGTTATCAACGACGCCCGCGTACATATCAAATTTAGGACTTCGAAGAGTACTTATTTTCGCATGGTGAAAATATGAAGAAATACAACAGGTTATAACTAATTGTGAGAATGAAAGAAATACAAAGATATAAGTAGTAAACCAGGGAAATAAATAAGACTCTAATGAAATCAATAGTGACGAGAATAAAAAGAAGACGACCTATACACAATGAATAATAAGTGTCTTTTGCTTTCTATATACACCCCGTCCAGGTGTGCATAACCTTCTACCTTGACTTGCCTTCTGGGAAGAAATACAGTGTGGAATGTAATAAAAGAGACTTCTCTCGTTACGTTGTCACACATAATGCAAATAATTAGGAGTGTGAGAGGCATGGAACACCAGGTGTAACAACCAGAATCTTAGTTTTCTCTGATGGTACTGTTAGTTCTTTTGGTT</canonical>
            <polymorphic>ACTCCATTGAATTACAGTTGTTGTCGGATTGAGCCATTGCTGTTGAGTGTGCTGAGCTTTTCTCTGAAACAAGTAGGAAAGTGAAACAAAGAAAAGAAGACATTAAAAGTTAAAACGAAAGAGAGGAAAGGTACACAACCGTCCAAGTCGAGAAACAAAATGAGAAGGAATGGGAGAATAAATGGATCTTCCCACACCGATGCTACATCCAGGTGTGCCCATAATCTCCTTCACCTCGTCTTGCAGATCAAAGAAACCCATCTTCACATGGTCACCGTTTATGGGAAAAAAAGGAAAGAGCAGAACAGTAGTGTATCGTGTGATTTCTAAAATCAATGGCTGTCGGCTTATAACTTCTGGTCAAAAGTTGATGGGGGTTCGGCTTTTGGAAGTTGGCCAGGTTCTGGTCGGAATTTGGCTAAAAACGGCTGTATAGCGAGCCATTGTCACATTTTGATAGGTTATTGAAAGTTGCAATAAAAAATTAGATCGGAACCTTRTCATAAATTTGTTGGAGTTTAGTAGCGGTCTTATCCGGAATCTGACCCACATGTTACCAGAAGTTATCAACGACGCCCGCGTACATATCAAATTTAGGACTTCGAAGAGTACTTATTTTCGCATGGTGAAAATATGAAGAAATACAACAGGTTATAACTAATTGTGAGAATGAAAGAAATACAAAGATATAAGTAGTAAACCAGGGAAATAAATAAGACTCTAATGAAATCAATAGTGACGAGAATAAAAAGAAGACGACCTATACACAATGAATAATAAGTGTCTTTTGCTTTCTATATACACCCCGTCCAGGTGTGCATAACCTTCTACCTTGACTTGCCTTCTGGGAAGAAATACAGTGTGGAATGTAATAAAAGAGACTTCTCTCGTTACGTTGTCACACATAATGCAAATAATTAGGAGTGTGAGAGGCATGGAACACCAGGTGTAACAACCAGAATCTTAGTTTTCTCTGATGGTACTGTTAGTTCTTTTGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGGAAAGAGCAGAACAGTAGT</pcr_primer_p1>
		<pcr_primer_p2>TCGAAGTCCTAAATTTGATATGT</pcr_primer_p2>
		<pcr_amplicon_size>316</pcr_amplicon_size>
		<canonical_amplicon>AAAGGAAAGAGCAGAACAGTAGTGTATCGTGTGATTTCTAAAATCAATGGCTGTCGGCTTATAACTTCTGGTCAAAAGTTGATGGGGGTTCGGCTTTTGGAAGTTGGCCAGGTTCTGGTCGGAATTTGGCTAAAAACGGCTGTATAGCGAGCCATTGTCACATTTTGATAGGTTATTGAAAGTTGCAATAAAAAATTAGATCGGAACCTTATCATAAATTTGTTGGAGTTTAGTAGCGGTCTTATCCGGAATCTGACCCACATGTTACCAGAAGTTATCAACGACGCCCGCGTACATATCAAATTTAGGACTTCGA</canonical_amplicon>
		<polymorphic_amplicon>AAAGGAAAGAGCAGAACAGTAGTGTATCGTGTGATTTCTAAAATCAATGGCTGTCGGCTTATAACTTCTGGTCAAAAGTTGATGGGGGTTCGGCTTTTGGAAGTTGGCCAGGTTCTGGTCGGAATTTGGCTAAAAACGGCTGTATAGCGAGCCATTGTCACATTTTGATAGGTTATTGAAAGTTGCAATAAAAAATTAGATCGGAACCTTRTCATAAATTTGTTGGAGTTTAGTAGCGGTCTTATCCGGAATCTGACCCACATGTTACCAGAAGTTATCAACGACGCCCGCGTACATATCAAATTTAGGACTTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31117</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>94933</contig_pos>
        <strand>-</strand>
        <context>AGATTGGCAC[A/G/C/T]AGTTGCCACG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G/C/T</alleles>
        <left_flank>GAGAGCAAATTTTTGGAGCACACAATTACACAAAATAGTTAGATTGGCAC</left_flank>
        <right_flank>AGTTGCCACGCTTCACATCACTGATAAAATTCAGCGGGAGCAGCGGGGGG</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGCAAAAACCCTGTAACAAAAACTGTTCAATATGACAGTTTGTGAAAGATCCGTCAAAGAAATTCCAACCGAATTTCTTCCTTTTCCTTGAAGATTCATAAAACTTGTTCATTTTCACATTGATCGCTATAATCAAAAAAGGGAATAGAGAAATATAATGAACCATTCAGAGAGAACAAAACGAGCTGTTTGGGGGTACTGTATGAAGCAGAAAATAAATAAGTTAAAAGGGGTCGAATCAGTAAAAAGGAGAAATTCGGAAAAGAGGGAAAAGGTGTAAGAGAGATAACTGAAAACGACGTAATTGAAAATGAAAAAAAAAGAGAAGAGCTGTCAGGATGATGTTTTTAGAGCAAAGAATAGGGGGGAATAATTACCAGGATAATCACAAAAATAAAGAAAATTTAGCGCAGGGATAAGCAACAATAACCATTGGAACCGAGAAGAAGAGAGCAAATTTTTGGAGCACACAATTACACAAAATAGTTAGATTGGCACCAGTTGCCACGCTTCACATCACTGATAAAATTCAGCGGGAGCAGCGGGGGGAAATATGCTGGAAGAAGAAATTAGGATAGATGATGGCTGAAACAAAAAAGAAAACGAGTACCTATGATTGAAATATGAATAGAAAATCTGGGGAAAAAAGAAAACAGTATTAAAAAATGATATAGTTACATGTTATATTTCTCTGCCTCCTCGTTGGATTCTTTCATGTCGGATAGCACTCTGAAAACCAACAATTAGACTAGAGAAGACAAGAAATTGTCTTACCTAGCAAATCTATTCCATTCTTCACTTTTCAGAACGTACAAACTTTCTCGAACATCGTACATATGCACACGACCCTCATCGTCTCCAACAAACACGTGTTTACCATCAGCCGACCAGATCAGCTTGTTCATGTACACCGTGTCTCCTTCTGCACCTGCTCGAAGTCGTGCCACTGGACCTTCCACATCTTCGTTCAGATTCCATACGAAGATCTGTAGAAAATTG</canonical>
            <polymorphic>TAGCAAAAACCCTGTAACAAAAACTGTTCAATATGACAGTTTGTGAAAGATCCGTCAAAGAAATTCCAACCGAATTTCTTCCTTTTCCTTGAAGATTCATAAAACTTGTTCATTTTCACATTGATCGCTATAATCAAAAAAGGGAATAGAGAAATATAATGAACCATTCAGAGAGAACAAAACGAGCTGTTTGGGGGTACTGTATGAAGCAGAAAATAAATAAGTTAAAAGGGGTCGAATCAGTAAAAAGGAGAAATTCGGAAAAGAGGGAAAAGGTGTAAGAGAGATAACTGAAAACGACGTAATTGAAAATGAAAAAAAAAGAGAAGAGCTGTCAGGATGATGTTTTTAGAGCAAAGAATAGGGGGGAATAATTACCAGGATAATCACAAAAATAAAGAAAATTTAGCGCAGGGATAAGCAACAATAACCATTGGAACCGAGAAGAAGAGAGCAAATTTTTGGAGCACACAATTACACAAAATAGTTAGATTGGCACRAGTTGCCACGCTTCACATCACTGATAAAATTCAGCGGGAGCAGCGGGGGGAAATATGCTGGAAGAAGAAATTAGGATAGATGATGGCTGAAACAAAAAAGAAAACGAGTACCTATGATTGAAATATGAATAGAAAATCTGGGGAAAAAAGAAAACAGTATTAAAAAATGATATAGTTACATGTTATATTTCTCTGCCTCCTCGTTGGATTCTTTCATGTCGGATAGCACTCTGAAAACCAACAATTAGACTAGAGAAGACAAGAAATTGTCTTACCTAGCAAATCTATTCCATTCTTCACTTTTCAGAACGTACAAACTTTCTCGAACATCGTACATATGCACACGACCCTCATCGTCTCCAACAAACACGTGTTTACCATCAGCCGACCAGATCAGCTTGTTCATGTACACCGTGTCTCCTTCTGCACCTGCTCGAAGTCGTGCCACTGGACCTTCCACATCTTCGTTCAGATTCCATACGAAGATCTGTAGAAAATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>503 438 59</canonical_bands>
                <polymorphic_bands>562 438</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTACCAGGATAATCACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCAATCATAGGTACTCGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTACCAGGATAATCACAAAAATAAAGAAAATTTAGCGCAGGGATAAGCAACAATAACCATTGGAACCGAGAAGAAGAGAGCAAATTTTTGGAGCACACAATTACACAAAATAGTTAGATTGGCACCAGTTGCCACGCTTCACATCACTGATAAAATTCAGCGGGAGCAGCGGGGGGAAATATGCTGGAAGAAGAAATTAGGATAGATGATGGCTGAAACAAAAAAGAAAACGAGTACCTATGATTGAA</canonical_amplicon>
		<polymorphic_amplicon>AATTACCAGGATAATCACAAAAATAAAGAAAATTTAGCGCAGGGATAAGCAACAATAACCATTGGAACCGAGAAGAAGAGAGCAAATTTTTGGAGCACACAATTACACAAAATAGTTAGATTGGCACRAGTTGCCACGCTTCACATCACTGATAAAATTCAGCGGGAGCAGCGGGGGGAAATATGCTGGAAGAAGAAATTAGGATAGATGATGGCTGAAACAAAAAAGAAAACGAGTACCTATGATTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31118</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>95743</contig_pos>
        <strand>+</strand>
        <context>AATCAAAAGT[G/T]RMCWWTGTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCTGGAAAACATTCAGAGGTAAAAACAGGAATCTATTACGAATCAAAAGT</left_flank>
        <right_flank>ACCTTTGTAACAAACGTCAGTTTTGATGACAGCCGGATCTGCTCCGTTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACAAACTTTCTCGAACATCGTACATATGCACACGACCCTCATCGTCTCCAACAAACACGTGTTTACCATCAGCCGACCAGATCAGCTTGTTCATGTACACCGTGTCTCCTTCTGCACCTGCTCGAAGTCGTGCCACTGGACCTTCCACATCTTCGTTCAGATTCCATACGAAGATCTGTAGAAAATTGAATCATAGTCTGAGCTATAATTTTTTGAATTTTTACGTTTCCATCGGCGTCAATGGATGCAAAAACAGCAGGATGGACTGGAGACCAGGCGACATCAAGTACAAGATCTGGGTGGGATTCAAAGGAGAACTTCAGATTTGCATCCTTGGTGCTCCATAATTTGATGGTCCAGTCGTGTGACGACGAGATGAAGAGATGGGAGAAGTCAACGACACCGGAAGCACGATGGAATTCAATACCCGTTAGAGTACCGCTGTGTCCTGGAAAACATTCAGAGGTAAAAACAGGAATCTATTACGAATCAAAAGTTACCTTTGTAACAAACGTCAGTTTTGATGACAGCCGGATCTGCTCCGTTCCTCGATGCTGCCAGAATCTCTCCAGTATCTGTTCCAACTACAAACGTTTGCATCTCACCAATTGGGAACGACATTCTTGTGGCAGAAGCCTAAACATGATATTCTATAATTCTTAGATATCGCTTTCAAGACTCACTGGTTTTCCTTCTTTTGTCATCAACTCCTTTCCATCCACTGGCTGTGTTAAATTGTCAACATTCCAACTGCAAATCCGTCCGTCTCGACTCAATGAAACGAAATTATGAGCGTTTTTGGTACCCACAACTGCGAGACACGAAACTGGTTGTGTGTGTGCTTGTGTTGTGAGTGGACTCTGAAAATATAGAAGTAAAAAAATAGATAATCATTTTAAAAACTCACTCTGTTTATGGGCAACTTACGACTCGTCAACCTATTATCCCAAACACAAATCTGACCAGATTCACATCCTGCGAGAAGCAAATGAGCGTGA</canonical>
            <polymorphic>GTACAAACTTTCTCGAACATCGTACATATGCACACGACCCTCATCGTCTCCAACAAACACGTGTTTACCATCAGCCGACCAGATCAGCTTGTTCATGTACACCGTGTCTCCTTCTGCACCTGCTCGAAGTCGTGCCACTGGACCTTCCACATCTTCGTTCAGATTCCATACGAAGATCTGTAGAAAATTGAATCATAGTCTGAGCTATAATTTTTTGAATTTTTACGTTTCCATCGGCGTCAATGGATGCAAAAACAGCAGGATGGACTGGAGACCAGGCGACATCAAGTACAAGATCTGGGTGGGATTCAAAGGAGAACTTCAGATTTGCATCCTTGGTGCTCCATAATTTGATGGTCCAGTCGTGTGACGACGAGATGAAGAGATGGGAGAAGTCAACGACACCGGAAGCACGATGGAATTCAATACCCGTTAGAGTACCGCTGTGTCCTGGAAAACATTCAGAGGTAAAAACAGGAATCTATTACGAATCAAAAGTKACCTTTGTAACAAACGTCAGTTTTGATGACAGCCGGATCTGCTCCGTTCCTCGATGCTGCCAGAATCTCTCCAGTATCTGTTCCAACTACAAACGTTTGCATCTCACCAATTGGGAACGACATTCTTGTGGCAGAAGCCTAAACATGATATTCTATAATTCTTAGATATCGCTTTCAAGACTCACTGGTTTTCCTTCTTTTGTCATCAACTCCTTTCCATCCACTGGCTGTGTTAAATTGTCAACATTCCAACTGCAAATCCGTCCGTCTCGACTCAATGAAACGAAATTATGAGCGTTTTTGGTACCCACAACTGCGAGACACGAAACTGGTTGTGTGTGTGCTTGTGTTGTGAGTGGACTCTGAAAATATAGAAGTAAAAAAATAGATAATCATTTTAAAAACTCACTCTGTTTATGGGCAACTTACGACTCGTCAACCTATTATCCCAAACACAAATCTGACCAGATTCACATCCTGCGAGAAGCAAATGAGCGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAATTTGATGGTCCAGTCGT</pcr_primer_p1>
		<pcr_primer_p2>CGTTTGTAGTTGGAACAGATACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAATTTGATGGTCCAGTCGTGTGACGACGAGATGAAGAGATGGGAGAAGTCAACGACACCGGAAGCACGATGGAATTCAATACCCGTTAGAGTACCGCTGTGTCCTGGAAAACATTCAGAGGTAAAAACAGGAATCTATTACGAATCAAAAGTTACCTTTGTAACAAACGTCAGTTTTGATGACAGCCGGATCTGCTCCGTTCCTCGATGCTGCCAGAATCTCTCCAGTATCTGTTCCAACTACAAACG</canonical_amplicon>
		<polymorphic_amplicon>ATAATTTGATGGTCCAGTCGTGTGACGACGAGATGAAGAGATGGGAGAAGTCAACGACACCGGAAGCACGATGGAATTCAATACCCGTTAGAGTACCGCTGTGTCCTGGAAAACATTCAGAGGTAAAAACAGGAATCTATTACGAATCAAAAGTKACCTTTGTAACAAACGTCAGTTTTGATGACAGCCGGATCTGCTCCGTTCCTCGATGCTGCCAGAATCTCTCCAGTATCTGTTCCAACTACAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31119</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>95744</contig_pos>
        <strand>+</strand>
        <context>ATCAAAAGTK[A/G]MCWWTGTAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGGAAAACATTCAGAGGTAAAAACAGGAATCTATTACGAATCAAAAGTT</left_flank>
        <right_flank>CCTTTGTAACAAACGTCAGTTTTGATGACAGCCGGATCTGCTCCGTTCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACAAACTTTCTCGAACATCGTACATATGCACACGACCCTCATCGTCTCCAACAAACACGTGTTTACCATCAGCCGACCAGATCAGCTTGTTCATGTACACCGTGTCTCCTTCTGCACCTGCTCGAAGTCGTGCCACTGGACCTTCCACATCTTCGTTCAGATTCCATACGAAGATCTGTAGAAAATTGAATCATAGTCTGAGCTATAATTTTTTGAATTTTTACGTTTCCATCGGCGTCAATGGATGCAAAAACAGCAGGATGGACTGGAGACCAGGCGACATCAAGTACAAGATCTGGGTGGGATTCAAAGGAGAACTTCAGATTTGCATCCTTGGTGCTCCATAATTTGATGGTCCAGTCGTGTGACGACGAGATGAAGAGATGGGAGAAGTCAACGACACCGGAAGCACGATGGAATTCAATACCCGTTAGAGTACCGCTGTGTCCTGGAAAACATTCAGAGGTAAAAACAGGAATCTATTACGAATCAAAAGTTACCTTTGTAACAAACGTCAGTTTTGATGACAGCCGGATCTGCTCCGTTCCTCGATGCTGCCAGAATCTCTCCAGTATCTGTTCCAACTACAAACGTTTGCATCTCACCAATTGGGAACGACATTCTTGTGGCAGAAGCCTAAACATGATATTCTATAATTCTTAGATATCGCTTTCAAGACTCACTGGTTTTCCTTCTTTTGTCATCAACTCCTTTCCATCCACTGGCTGTGTTAAATTGTCAACATTCCAACTGCAAATCCGTCCGTCTCGACTCAATGAAACGAAATTATGAGCGTTTTTGGTACCCACAACTGCGAGACACGAAACTGGTTGTGTGTGTGCTTGTGTTGTGAGTGGACTCTGAAAATATAGAAGTAAAAAAATAGATAATCATTTTAAAAACTCACTCTGTTTATGGGCAACTTACGACTCGTCAACCTATTATCCCAAACACAAATCTGACCAGATTCACATCCTGCGAGAAGCAAATGAGCGTGAA</canonical>
            <polymorphic>TACAAACTTTCTCGAACATCGTACATATGCACACGACCCTCATCGTCTCCAACAAACACGTGTTTACCATCAGCCGACCAGATCAGCTTGTTCATGTACACCGTGTCTCCTTCTGCACCTGCTCGAAGTCGTGCCACTGGACCTTCCACATCTTCGTTCAGATTCCATACGAAGATCTGTAGAAAATTGAATCATAGTCTGAGCTATAATTTTTTGAATTTTTACGTTTCCATCGGCGTCAATGGATGCAAAAACAGCAGGATGGACTGGAGACCAGGCGACATCAAGTACAAGATCTGGGTGGGATTCAAAGGAGAACTTCAGATTTGCATCCTTGGTGCTCCATAATTTGATGGTCCAGTCGTGTGACGACGAGATGAAGAGATGGGAGAAGTCAACGACACCGGAAGCACGATGGAATTCAATACCCGTTAGAGTACCGCTGTGTCCTGGAAAACATTCAGAGGTAAAAACAGGAATCTATTACGAATCAAAAGTTRCCTTTGTAACAAACGTCAGTTTTGATGACAGCCGGATCTGCTCCGTTCCTCGATGCTGCCAGAATCTCTCCAGTATCTGTTCCAACTACAAACGTTTGCATCTCACCAATTGGGAACGACATTCTTGTGGCAGAAGCCTAAACATGATATTCTATAATTCTTAGATATCGCTTTCAAGACTCACTGGTTTTCCTTCTTTTGTCATCAACTCCTTTCCATCCACTGGCTGTGTTAAATTGTCAACATTCCAACTGCAAATCCGTCCGTCTCGACTCAATGAAACGAAATTATGAGCGTTTTTGGTACCCACAACTGCGAGACACGAAACTGGTTGTGTGTGTGCTTGTGTTGTGAGTGGACTCTGAAAATATAGAAGTAAAAAAATAGATAATCATTTTAAAAACTCACTCTGTTTATGGGCAACTTACGACTCGTCAACCTATTATCCCAAACACAAATCTGACCAGATTCACATCCTGCGAGAAGCAAATGAGCGTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>495 365 131 9</canonical_bands>
                <polymorphic_bands>495 365 140</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAATTTGATGGTCCAGTCGT</pcr_primer_p1>
		<pcr_primer_p2>CGTTTGTAGTTGGAACAGATACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAATTTGATGGTCCAGTCGTGTGACGACGAGATGAAGAGATGGGAGAAGTCAACGACACCGGAAGCACGATGGAATTCAATACCCGTTAGAGTACCGCTGTGTCCTGGAAAACATTCAGAGGTAAAAACAGGAATCTATTACGAATCAAAAGTTACCTTTGTAACAAACGTCAGTTTTGATGACAGCCGGATCTGCTCCGTTCCTCGATGCTGCCAGAATCTCTCCAGTATCTGTTCCAACTACAAACG</canonical_amplicon>
		<polymorphic_amplicon>ATAATTTGATGGTCCAGTCGTGTGACGACGAGATGAAGAGATGGGAGAAGTCAACGACACCGGAAGCACGATGGAATTCAATACCCGTTAGAGTACCGCTGTGTCCTGGAAAACATTCAGAGGTAAAAACAGGAATCTATTACGAATCAAAAGTTRCCTTTGTAACAAACGTCAGTTTTGATGACAGCCGGATCTGCTCCGTTCCTCGATGCTGCCAGAATCTCTCCAGTATCTGTTCCAACTACAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31120</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>95745</contig_pos>
        <strand>+</strand>
        <context>TCAAAAGTKR[A/C]CWWTGTAACA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGGAAAACATTCAGAGGTAAAAACAGGAATCTATTACGAATCAAAAGTTA</left_flank>
        <right_flank>CTTTGTAACAAACGTCAGTTTTGATGACAGCCGGATCTGCTCCGTTCCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAAACTTTCTCGAACATCGTACATATGCACACGACCCTCATCGTCTCCAACAAACACGTGTTTACCATCAGCCGACCAGATCAGCTTGTTCATGTACACCGTGTCTCCTTCTGCACCTGCTCGAAGTCGTGCCACTGGACCTTCCACATCTTCGTTCAGATTCCATACGAAGATCTGTAGAAAATTGAATCATAGTCTGAGCTATAATTTTTTGAATTTTTACGTTTCCATCGGCGTCAATGGATGCAAAAACAGCAGGATGGACTGGAGACCAGGCGACATCAAGTACAAGATCTGGGTGGGATTCAAAGGAGAACTTCAGATTTGCATCCTTGGTGCTCCATAATTTGATGGTCCAGTCGTGTGACGACGAGATGAAGAGATGGGAGAAGTCAACGACACCGGAAGCACGATGGAATTCAATACCCGTTAGAGTACCGCTGTGTCCTGGAAAACATTCAGAGGTAAAAACAGGAATCTATTACGAATCAAAAGTTACCTTTGTAACAAACGTCAGTTTTGATGACAGCCGGATCTGCTCCGTTCCTCGATGCTGCCAGAATCTCTCCAGTATCTGTTCCAACTACAAACGTTTGCATCTCACCAATTGGGAACGACATTCTTGTGGCAGAAGCCTAAACATGATATTCTATAATTCTTAGATATCGCTTTCAAGACTCACTGGTTTTCCTTCTTTTGTCATCAACTCCTTTCCATCCACTGGCTGTGTTAAATTGTCAACATTCCAACTGCAAATCCGTCCGTCTCGACTCAATGAAACGAAATTATGAGCGTTTTTGGTACCCACAACTGCGAGACACGAAACTGGTTGTGTGTGTGCTTGTGTTGTGAGTGGACTCTGAAAATATAGAAGTAAAAAAATAGATAATCATTTTAAAAACTCACTCTGTTTATGGGCAACTTACGACTCGTCAACCTATTATCCCAAACACAAATCTGACCAGATTCACATCCTGCGAGAAGCAAATGAGCGTGAAA</canonical>
            <polymorphic>ACAAACTTTCTCGAACATCGTACATATGCACACGACCCTCATCGTCTCCAACAAACACGTGTTTACCATCAGCCGACCAGATCAGCTTGTTCATGTACACCGTGTCTCCTTCTGCACCTGCTCGAAGTCGTGCCACTGGACCTTCCACATCTTCGTTCAGATTCCATACGAAGATCTGTAGAAAATTGAATCATAGTCTGAGCTATAATTTTTTGAATTTTTACGTTTCCATCGGCGTCAATGGATGCAAAAACAGCAGGATGGACTGGAGACCAGGCGACATCAAGTACAAGATCTGGGTGGGATTCAAAGGAGAACTTCAGATTTGCATCCTTGGTGCTCCATAATTTGATGGTCCAGTCGTGTGACGACGAGATGAAGAGATGGGAGAAGTCAACGACACCGGAAGCACGATGGAATTCAATACCCGTTAGAGTACCGCTGTGTCCTGGAAAACATTCAGAGGTAAAAACAGGAATCTATTACGAATCAAAAGTTAMCTTTGTAACAAACGTCAGTTTTGATGACAGCCGGATCTGCTCCGTTCCTCGATGCTGCCAGAATCTCTCCAGTATCTGTTCCAACTACAAACGTTTGCATCTCACCAATTGGGAACGACATTCTTGTGGCAGAAGCCTAAACATGATATTCTATAATTCTTAGATATCGCTTTCAAGACTCACTGGTTTTCCTTCTTTTGTCATCAACTCCTTTCCATCCACTGGCTGTGTTAAATTGTCAACATTCCAACTGCAAATCCGTCCGTCTCGACTCAATGAAACGAAATTATGAGCGTTTTTGGTACCCACAACTGCGAGACACGAAACTGGTTGTGTGTGTGCTTGTGTTGTGAGTGGACTCTGAAAATATAGAAGTAAAAAAATAGATAATCATTTTAAAAACTCACTCTGTTTATGGGCAACTTACGACTCGTCAACCTATTATCCCAAACACAAATCTGACCAGATTCACATCCTGCGAGAAGCAAATGAGCGTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>496 364 131 9</canonical_bands>
                <polymorphic_bands>496 364 140</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAATTTGATGGTCCAGTCGT</pcr_primer_p1>
		<pcr_primer_p2>CGTTTGTAGTTGGAACAGATACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAATTTGATGGTCCAGTCGTGTGACGACGAGATGAAGAGATGGGAGAAGTCAACGACACCGGAAGCACGATGGAATTCAATACCCGTTAGAGTACCGCTGTGTCCTGGAAAACATTCAGAGGTAAAAACAGGAATCTATTACGAATCAAAAGTTACCTTTGTAACAAACGTCAGTTTTGATGACAGCCGGATCTGCTCCGTTCCTCGATGCTGCCAGAATCTCTCCAGTATCTGTTCCAACTACAAACG</canonical_amplicon>
		<polymorphic_amplicon>ATAATTTGATGGTCCAGTCGTGTGACGACGAGATGAAGAGATGGGAGAAGTCAACGACACCGGAAGCACGATGGAATTCAATACCCGTTAGAGTACCGCTGTGTCCTGGAAAACATTCAGAGGTAAAAACAGGAATCTATTACGAATCAAAAGTTAMCTTTGTAACAAACGTCAGTTTTGATGACAGCCGGATCTGCTCCGTTCCTCGATGCTGCCAGAATCTCTCCAGTATCTGTTCCAACTACAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31121</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>95747</contig_pos>
        <strand>+</strand>
        <context>AAAAGTKRMC[A/T]WTGTAACAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAACATTCAGAGGTAAAAACAGGAATCTATTACGAATCAAAAGTTACC</left_flank>
        <right_flank>TTGTAACAAACGTCAGTTTTGATGACAGCCGGATCTGCTCCGTTCCTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTTTCTCGAACATCGTACATATGCACACGACCCTCATCGTCTCCAACAAACACGTGTTTACCATCAGCCGACCAGATCAGCTTGTTCATGTACACCGTGTCTCCTTCTGCACCTGCTCGAAGTCGTGCCACTGGACCTTCCACATCTTCGTTCAGATTCCATACGAAGATCTGTAGAAAATTGAATCATAGTCTGAGCTATAATTTTTTGAATTTTTACGTTTCCATCGGCGTCAATGGATGCAAAAACAGCAGGATGGACTGGAGACCAGGCGACATCAAGTACAAGATCTGGGTGGGATTCAAAGGAGAACTTCAGATTTGCATCCTTGGTGCTCCATAATTTGATGGTCCAGTCGTGTGACGACGAGATGAAGAGATGGGAGAAGTCAACGACACCGGAAGCACGATGGAATTCAATACCCGTTAGAGTACCGCTGTGTCCTGGAAAACATTCAGAGGTAAAAACAGGAATCTATTACGAATCAAAAGTTACCTTTGTAACAAACGTCAGTTTTGATGACAGCCGGATCTGCTCCGTTCCTCGATGCTGCCAGAATCTCTCCAGTATCTGTTCCAACTACAAACGTTTGCATCTCACCAATTGGGAACGACATTCTTGTGGCAGAAGCCTAAACATGATATTCTATAATTCTTAGATATCGCTTTCAAGACTCACTGGTTTTCCTTCTTTTGTCATCAACTCCTTTCCATCCACTGGCTGTGTTAAATTGTCAACATTCCAACTGCAAATCCGTCCGTCTCGACTCAATGAAACGAAATTATGAGCGTTTTTGGTACCCACAACTGCGAGACACGAAACTGGTTGTGTGTGTGCTTGTGTTGTGAGTGGACTCTGAAAATATAGAAGTAAAAAAATAGATAATCATTTTAAAAACTCACTCTGTTTATGGGCAACTTACGACTCGTCAACCTATTATCCCAAACACAAATCTGACCAGATTCACATCCTGCGAGAAGCAAATGAGCGTGAAATC</canonical>
            <polymorphic>AAACTTTCTCGAACATCGTACATATGCACACGACCCTCATCGTCTCCAACAAACACGTGTTTACCATCAGCCGACCAGATCAGCTTGTTCATGTACACCGTGTCTCCTTCTGCACCTGCTCGAAGTCGTGCCACTGGACCTTCCACATCTTCGTTCAGATTCCATACGAAGATCTGTAGAAAATTGAATCATAGTCTGAGCTATAATTTTTTGAATTTTTACGTTTCCATCGGCGTCAATGGATGCAAAAACAGCAGGATGGACTGGAGACCAGGCGACATCAAGTACAAGATCTGGGTGGGATTCAAAGGAGAACTTCAGATTTGCATCCTTGGTGCTCCATAATTTGATGGTCCAGTCGTGTGACGACGAGATGAAGAGATGGGAGAAGTCAACGACACCGGAAGCACGATGGAATTCAATACCCGTTAGAGTACCGCTGTGTCCTGGAAAACATTCAGAGGTAAAAACAGGAATCTATTACGAATCAAAAGTTACCWTTGTAACAAACGTCAGTTTTGATGACAGCCGGATCTGCTCCGTTCCTCGATGCTGCCAGAATCTCTCCAGTATCTGTTCCAACTACAAACGTTTGCATCTCACCAATTGGGAACGACATTCTTGTGGCAGAAGCCTAAACATGATATTCTATAATTCTTAGATATCGCTTTCAAGACTCACTGGTTTTCCTTCTTTTGTCATCAACTCCTTTCCATCCACTGGCTGTGTTAAATTGTCAACATTCCAACTGCAAATCCGTCCGTCTCGACTCAATGAAACGAAATTATGAGCGTTTTTGGTACCCACAACTGCGAGACACGAAACTGGTTGTGTGTGTGCTTGTGTTGTGAGTGGACTCTGAAAATATAGAAGTAAAAAAATAGATAATCATTTTAAAAACTCACTCTGTTTATGGGCAACTTACGACTCGTCAACCTATTATCCCAAACACAAATCTGACCAGATTCACATCCTGCGAGAAGCAAATGAGCGTGAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAATTTGATGGTCCAGTCGT</pcr_primer_p1>
		<pcr_primer_p2>CGTTTGTAGTTGGAACAGATACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAATTTGATGGTCCAGTCGTGTGACGACGAGATGAAGAGATGGGAGAAGTCAACGACACCGGAAGCACGATGGAATTCAATACCCGTTAGAGTACCGCTGTGTCCTGGAAAACATTCAGAGGTAAAAACAGGAATCTATTACGAATCAAAAGTTACCTTTGTAACAAACGTCAGTTTTGATGACAGCCGGATCTGCTCCGTTCCTCGATGCTGCCAGAATCTCTCCAGTATCTGTTCCAACTACAAACG</canonical_amplicon>
		<polymorphic_amplicon>ATAATTTGATGGTCCAGTCGTGTGACGACGAGATGAAGAGATGGGAGAAGTCAACGACACCGGAAGCACGATGGAATTCAATACCCGTTAGAGTACCGCTGTGTCCTGGAAAACATTCAGAGGTAAAAACAGGAATCTATTACGAATCAAAAGTTACCWTTGTAACAAACGTCAGTTTTGATGACAGCCGGATCTGCTCCGTTCCTCGATGCTGCCAGAATCTCTCCAGTATCTGTTCCAACTACAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31122</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>95748</contig_pos>
        <strand>+</strand>
        <context>AAAGTKRMCW[A/T]TGTAACAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAACATTCAGAGGTAAAAACAGGAATCTATTACGAATCAAAAGTTACCT</left_flank>
        <right_flank>TGTAACAAACGTCAGTTTTGATGACAGCCGGATCTGCTCCGTTCCTCGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTTTCTCGAACATCGTACATATGCACACGACCCTCATCGTCTCCAACAAACACGTGTTTACCATCAGCCGACCAGATCAGCTTGTTCATGTACACCGTGTCTCCTTCTGCACCTGCTCGAAGTCGTGCCACTGGACCTTCCACATCTTCGTTCAGATTCCATACGAAGATCTGTAGAAAATTGAATCATAGTCTGAGCTATAATTTTTTGAATTTTTACGTTTCCATCGGCGTCAATGGATGCAAAAACAGCAGGATGGACTGGAGACCAGGCGACATCAAGTACAAGATCTGGGTGGGATTCAAAGGAGAACTTCAGATTTGCATCCTTGGTGCTCCATAATTTGATGGTCCAGTCGTGTGACGACGAGATGAAGAGATGGGAGAAGTCAACGACACCGGAAGCACGATGGAATTCAATACCCGTTAGAGTACCGCTGTGTCCTGGAAAACATTCAGAGGTAAAAACAGGAATCTATTACGAATCAAAAGTTACCTTTGTAACAAACGTCAGTTTTGATGACAGCCGGATCTGCTCCGTTCCTCGATGCTGCCAGAATCTCTCCAGTATCTGTTCCAACTACAAACGTTTGCATCTCACCAATTGGGAACGACATTCTTGTGGCAGAAGCCTAAACATGATATTCTATAATTCTTAGATATCGCTTTCAAGACTCACTGGTTTTCCTTCTTTTGTCATCAACTCCTTTCCATCCACTGGCTGTGTTAAATTGTCAACATTCCAACTGCAAATCCGTCCGTCTCGACTCAATGAAACGAAATTATGAGCGTTTTTGGTACCCACAACTGCGAGACACGAAACTGGTTGTGTGTGTGCTTGTGTTGTGAGTGGACTCTGAAAATATAGAAGTAAAAAAATAGATAATCATTTTAAAAACTCACTCTGTTTATGGGCAACTTACGACTCGTCAACCTATTATCCCAAACACAAATCTGACCAGATTCACATCCTGCGAGAAGCAAATGAGCGTGAAATCG</canonical>
            <polymorphic>AACTTTCTCGAACATCGTACATATGCACACGACCCTCATCGTCTCCAACAAACACGTGTTTACCATCAGCCGACCAGATCAGCTTGTTCATGTACACCGTGTCTCCTTCTGCACCTGCTCGAAGTCGTGCCACTGGACCTTCCACATCTTCGTTCAGATTCCATACGAAGATCTGTAGAAAATTGAATCATAGTCTGAGCTATAATTTTTTGAATTTTTACGTTTCCATCGGCGTCAATGGATGCAAAAACAGCAGGATGGACTGGAGACCAGGCGACATCAAGTACAAGATCTGGGTGGGATTCAAAGGAGAACTTCAGATTTGCATCCTTGGTGCTCCATAATTTGATGGTCCAGTCGTGTGACGACGAGATGAAGAGATGGGAGAAGTCAACGACACCGGAAGCACGATGGAATTCAATACCCGTTAGAGTACCGCTGTGTCCTGGAAAACATTCAGAGGTAAAAACAGGAATCTATTACGAATCAAAAGTTACCTWTGTAACAAACGTCAGTTTTGATGACAGCCGGATCTGCTCCGTTCCTCGATGCTGCCAGAATCTCTCCAGTATCTGTTCCAACTACAAACGTTTGCATCTCACCAATTGGGAACGACATTCTTGTGGCAGAAGCCTAAACATGATATTCTATAATTCTTAGATATCGCTTTCAAGACTCACTGGTTTTCCTTCTTTTGTCATCAACTCCTTTCCATCCACTGGCTGTGTTAAATTGTCAACATTCCAACTGCAAATCCGTCCGTCTCGACTCAATGAAACGAAATTATGAGCGTTTTTGGTACCCACAACTGCGAGACACGAAACTGGTTGTGTGTGTGCTTGTGTTGTGAGTGGACTCTGAAAATATAGAAGTAAAAAAATAGATAATCATTTTAAAAACTCACTCTGTTTATGGGCAACTTACGACTCGTCAACCTATTATCCCAAACACAAATCTGACCAGATTCACATCCTGCGAGAAGCAAATGAGCGTGAAATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAATTTGATGGTCCAGTCGT</pcr_primer_p1>
		<pcr_primer_p2>CGTTTGTAGTTGGAACAGATACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAATTTGATGGTCCAGTCGTGTGACGACGAGATGAAGAGATGGGAGAAGTCAACGACACCGGAAGCACGATGGAATTCAATACCCGTTAGAGTACCGCTGTGTCCTGGAAAACATTCAGAGGTAAAAACAGGAATCTATTACGAATCAAAAGTTACCTTTGTAACAAACGTCAGTTTTGATGACAGCCGGATCTGCTCCGTTCCTCGATGCTGCCAGAATCTCTCCAGTATCTGTTCCAACTACAAACG</canonical_amplicon>
		<polymorphic_amplicon>ATAATTTGATGGTCCAGTCGTGTGACGACGAGATGAAGAGATGGGAGAAGTCAACGACACCGGAAGCACGATGGAATTCAATACCCGTTAGAGTACCGCTGTGTCCTGGAAAACATTCAGAGGTAAAAACAGGAATCTATTACGAATCAAAAGTTACCTWTGTAACAAACGTCAGTTTTGATGACAGCCGGATCTGCTCCGTTCCTCGATGCTGCCAGAATCTCTCCAGTATCTGTTCCAACTACAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31123</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>113674</contig_pos>
        <strand>+</strand>
        <context>TAGAACTATA[A/T]ATTTCCAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAATTTTTTAAATGCTGAAACTATAGAAACCTGGATTTTTAGAACTATA</left_flank>
        <right_flank>ATTTCCAAATTCCAAAAGATTAAAATGTGTGAATTTTCGGATCGAAAAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCCGGTGTTCCCGGTTCTGAGACCGTAGCGAACTCACCACTGGACCAAAATTTACCAAATTTTCACAGATGACCCGAAATAGCAGCGAGATGATGCCCGTCTATTTTAAATTTTCGATATTCGATTTTTGACGTCTTCTGGATATGACCTTCTACTTCTACAGTGCAAATCCTTAGAAATTATTTTCACGCCATTCCCGCCCATCCACCTATTTTTTCCTATCCACGTTATATCAAACAAAAAGATGATTTTGTGCGAAGAGACATTCAGTCTGGGTTCTGGAGATTTAAAAGTATCTAAAAATTATGATAAGAAATCAGAGAAAAAGACAAGATCCCTCAAAGATCAATAAGAACGCGTTTAATGTAGTCTTTGAACTTCTTAGGCTTTAAGTTTTAAGAAATTAAAATCTTTCGAATTTCGAAGGTTTTGAATTCCCAAATTTTCCAAATTTTTTAAATGCTGAAACTATAGAAACCTGGATTTTTAGAACTATATATTTCCAAATTCCAAAAGATTAAAATGTGTGAATTTTCGGATCGAAAAATTCAAAATTTTAAAATTTTAAAAATAACCGCAAATCAGAAATTCCTGAATGCAGAAATGCAGAAATTCGCAAAAATCGGAAAATCTGAAGATCAGAAAGGCAGAATCTCAAAAAAAAAATCAGAAACCCATAAATTCAGAAATTAAGAGTCTCAAAAAACTAAAATTTCTGAGATTAAATTCTTGAATTTCAGAAAGTCCTAATTTGGCAATTCGGAAATTCGAAAAATCAAAAATCAAAACTTCCGAATCTTAAAAAAAAATTAGAATTTCAGAATTTCAGAACTTCAGAAACTCAGAAATTAGGAAATTCGAAAAATCAGAATTTCTGAATCATGAATACCTGAATTTTCAAATTTGTAAACTGCTGAATTTCTAAACCTCTGAACTTCTTTCGAAAAATTTAAAAACTTCCTAACTCCTAAGTTTCTCTGAAATTTTGAGTTTTTGTT</canonical>
            <polymorphic>TGTCCGGTGTTCCCGGTTCTGAGACCGTAGCGAACTCACCACTGGACCAAAATTTACCAAATTTTCACAGATGACCCGAAATAGCAGCGAGATGATGCCCGTCTATTTTAAATTTTCGATATTCGATTTTTGACGTCTTCTGGATATGACCTTCTACTTCTACAGTGCAAATCCTTAGAAATTATTTTCACGCCATTCCCGCCCATCCACCTATTTTTTCCTATCCACGTTATATCAAACAAAAAGATGATTTTGTGCGAAGAGACATTCAGTCTGGGTTCTGGAGATTTAAAAGTATCTAAAAATTATGATAAGAAATCAGAGAAAAAGACAAGATCCCTCAAAGATCAATAAGAACGCGTTTAATGTAGTCTTTGAACTTCTTAGGCTTTAAGTTTTAAGAAATTAAAATCTTTCGAATTTCGAAGGTTTTGAATTCCCAAATTTTCCAAATTTTTTAAATGCTGAAACTATAGAAACCTGGATTTTTAGAACTATAWATTTCCAAATTCCAAAAGATTAAAATGTGTGAATTTTCGGATCGAAAAATTCAAAATTTTAAAATTTTAAAAATAACCGCAAATCAGAAATTCCTGAATGCAGAAATGCAGAAATTCGCAAAAATCGGAAAATCTGAAGATCAGAAAGGCAGAATCTCAAAAAAAAAATCAGAAACCCATAAATTCAGAAATTAAGAGTCTCAAAAAACTAAAATTTCTGAGATTAAATTCTTGAATTTCAGAAAGTCCTAATTTGGCAATTCGGAAATTCGAAAAATCAAAAATCAAAACTTCCGAATCTTAAAAAAAAATTAGAATTTCAGAATTTCAGAACTTCAGAAACTCAGAAATTAGGAAATTCGAAAAATCAGAATTTCTGAATCATGAATACCTGAATTTTCAAATTTGTAAACTGCTGAATTTCTAAACCTCTGAACTTCTTTCGAAAAATTTAAAAACTTCCTAACTCCTAAGTTTCTCTGAAATTTTGAGTTTTTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCTTTGAACTTCTTAGGCTTTA</pcr_primer_p1>
		<pcr_primer_p2>ATTTCTGCATTTCTGCATTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGTCTTTGAACTTCTTAGGCTTTAAGTTTTAAGAAATTAAAATCTTTCGAATTTCGAAGGTTTTGAATTCCCAAATTTTCCAAATTTTTTAAATGCTGAAACTATAGAAACCTGGATTTTTAGAACTATATATTTCCAAATTCCAAAAGATTAAAATGTGTGAATTTTCGGATCGAAAAATTCAAAATTTTAAAATTTTAAAAATAACCGCAAATCAGAAATTCCTGAATGCAGAAATGCAGAAAT</canonical_amplicon>
		<polymorphic_amplicon>AGTCTTTGAACTTCTTAGGCTTTAAGTTTTAAGAAATTAAAATCTTTCGAATTTCGAAGGTTTTGAATTCCCAAATTTTCCAAATTTTTTAAATGCTGAAACTATAGAAACCTGGATTTTTAGAACTATAWATTTCCAAATTCCAAAAGATTAAAATGTGTGAATTTTCGGATCGAAAAATTCAAAATTTTAAAATTTTAAAAATAACCGCAAATCAGAAATTCCTGAATGCAGAAATGCAGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31124</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>113759</contig_pos>
        <strand>+</strand>
        <context>aaCCGCAAAT[C/T]AGAAATTCCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCGGATCGAAAAATTCAAAATTTTAAAATTTTAAAAATAACCGCAAAT</left_flank>
        <right_flank>AGAAATTCCTGAATGCAGAAATGCAGAAATTCGCAAAAATCGGAAAATCT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCGAGATGATGCCCGTCTATTTTAAATTTTCGATATTCGATTTTTGACGTCTTCTGGATATGACCTTCTACTTCTACAGTGCAAATCCTTAGAAATTATTTTCACGCCATTCCCGCCCATCCACCTATTTTTTCCTATCCACGTTATATCAAACAAAAAGATGATTTTGTGCGAAGAGACATTCAGTCTGGGTTCTGGAGATTTAAAAGTATCTAAAAATTATGATAAGAAATCAGAGAAAAAGACAAGATCCCTCAAAGATCAATAAGAACGCGTTTAATGTAGTCTTTGAACTTCTTAGGCTTTAAGTTTTAAGAAATTAAAATCTTTCGAATTTCGAAGGTTTTGAATTCCCAAATTTTCCAAATTTTTTAAATGCTGAAACTATAGAAACCTGGATTTTTAGAACTATATATTTCCAAATTCCAAAAGATTAAAATGTGTGAATTTTCGGATCGAAAAATTCAAAATTTTAAAATTTTAAAAATAACCGCAAATCAGAAATTCCTGAATGCAGAAATGCAGAAATTCGCAAAAATCGGAAAATCTGAAGATCAGAAAGGCAGAATCTCAAAAAAAAAATCAGAAACCCATAAATTCAGAAATTAAGAGTCTCAAAAAACTAAAATTTCTGAGATTAAATTCTTGAATTTCAGAAAGTCCTAATTTGGCAATTCGGAAATTCGAAAAATCAAAAATCAAAACTTCCGAATCTTAAAAAAAAATTAGAATTTCAGAATTTCAGAACTTCAGAAACTCAGAAATTAGGAAATTCGAAAAATCAGAATTTCTGAATCATGAATACCTGAATTTTCAAATTTGTAAACTGCTGAATTTCTAAACCTCTGAACTTCTTTCGAAAAATTTAAAAACTTCCTAACTCCTAAGTTTCTCTGAAATTTTGAGTTTTTGTTCAATTCTGAACTCATTCTGAATTCAATTTTTAGATTTTTTTTTTCGAAATTTTGTTCCCAAAATTTTTAGTCGCTGTTTTGAAGT</canonical>
            <polymorphic>AGCGAGATGATGCCCGTCTATTTTAAATTTTCGATATTCGATTTTTGACGTCTTCTGGATATGACCTTCTACTTCTACAGTGCAAATCCTTAGAAATTATTTTCACGCCATTCCCGCCCATCCACCTATTTTTTCCTATCCACGTTATATCAAACAAAAAGATGATTTTGTGCGAAGAGACATTCAGTCTGGGTTCTGGAGATTTAAAAGTATCTAAAAATTATGATAAGAAATCAGAGAAAAAGACAAGATCCCTCAAAGATCAATAAGAACGCGTTTAATGTAGTCTTTGAACTTCTTAGGCTTTAAGTTTTAAGAAATTAAAATCTTTCGAATTTCGAAGGTTTTGAATTCCCAAATTTTCCAAATTTTTTAAATGCTGAAACTATAGAAACCTGGATTTTTAGAACTATATATTTCCAAATTCCAAAAGATTAAAATGTGTGAATTTTCGGATCGAAAAATTCAAAATTTTAAAATTTTAAAAATAACCGCAAATYAGAAATTCCTGAATGCAGAAATGCAGAAATTCGCAAAAATCGGAAAATCTGAAGATCAGAAAGGCAGAATCTCAAAAAAAAAATCAGAAACCCATAAATTCAGAAATTAAGAGTCTCAAAAAACTAAAATTTCTGAGATTAAATTCTTGAATTTCAGAAAGTCCTAATTTGGCAATTCGGAAATTCGAAAAATCAAAAATCAAAACTTCCGAATCTTAAAAAAAAATTAGAATTTCAGAATTTCAGAACTTCAGAAACTCAGAAATTAGGAAATTCGAAAAATCAGAATTTCTGAATCATGAATACCTGAATTTTCAAATTTGTAAACTGCTGAATTTCTAAACCTCTGAACTTCTTTCGAAAAATTTAAAAACTTCCTAACTCCTAAGTTTCTCTGAAATTTTGAGTTTTTGTTCAATTCTGAACTCATTCTGAATTCAATTTTTAGATTTTTTTTTTCGAAATTTTGTTCCCAAAATTTTTAGTCGCTGTTTTGAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>236 218 67 55 48 47 41 32 31 28 27 26 24 23 22 16 11 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>236 218 88 67 55 48 32 31 28 27 26 24 23 22 16 11 8 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCCAAAAGATTAAAATGTGTG</pcr_primer_p1>
		<pcr_primer_p2>TGCCAAATTAGGACTTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTCCAAAAGATTAAAATGTGTGAATTTTCGGATCGAAAAATTCAAAATTTTAAAATTTTAAAAATAACCGCAAATCAGAAATTCCTGAATGCAGAAATGCAGAAATTCGCAAAAATCGGAAAATCTGAAGATCAGAAAGGCAGAATCTCAAAAAAAAAATCAGAAACCCATAAATTCAGAAATTAAGAGTCTCAAAAAACTAAAATTTCTGAGATTAAATTCTTGAATTTCAGAAAGTCCTAATTTGGCA</canonical_amplicon>
		<polymorphic_amplicon>ATTCCAAAAGATTAAAATGTGTGAATTTTCGGATCGAAAAATTCAAAATTTTAAAATTTTAAAAATAACCGCAAATYAGAAATTCCTGAATGCAGAAATGCAGAAATTCGCAAAAATCGGAAAATCTGAAGATCAGAAAGGCAGAATCTCAAAAAAAAAATCAGAAACCCATAAATTCAGAAATTAAGAGTCTCAAAAAACTAAAATTTCTGAGATTAAATTCTTGAATTTCAGAAAGTCCTAATTTGGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31125</snp_id>
        <super_contig>c005800808.Contig3</super_contig>
        <contig_pos>114930</contig_pos>
        <strand>+</strand>
        <context>TTTCAAAAGA[A/T]CAGATTACGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCATGAATTTTCTAATTTATGATTGTCGAGGTTTCTGAATTTCAAAAGA</left_flank>
        <right_flank>CAGATTACGCATACACTTGACTTTTTCTGAGCCTATGATTCTAAATCACG</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTGCGAATTTGAGAGTTACAGAAGTTTTGTTAGACTTATTTCCTTCATCACAATGTCTAAGATTATATGCATTAAAACACTTTTCATTAACTGACTTTTCGAATTCTCAAAAATTCAAATCTCCTCATATCCGAGATGTTAAATTCCGAAACTACCGAGATCCTGAGTTTCCAAAAAATCATTTTCTTAAGCTCAAAATTTCCTAATTTTCGAATTTGTGAGCATAGGCCCTAAAAAACAGCCCCTGTAAAAGTGACGGACTCTCTTTATTAGATTACGGGTATTGTTGTTTATTAAAATTTGAATTTGGAATTTCCCGAGTTTCTTGAATTTTCTGATGTTCCCAAATTTCTGAATTTCAAGATGATTAGACTTTTGTGATTCTAGAACCCGGAATATAAAAATTCCAGAATTTTTAAAATTCTGGGTTTTTCAATCCTATTTTTTCATGAATTTTCTAATTTATGATTGTCGAGGTTTCTGAATTTCAAAAGATCAGATTACGCATACACTTGACTTTTTCTGAGCCTATGATTCTAAATCACGTTGTAATTGTAGGAAAGGGGCCACAATGCCTGTATTTTTATAGAGAAGGCTAGTCCTCTTTTTCAAGTCCAGTAGGGGCTTACTTTGAGTGTTAAACAAATTGGTGGCGAGAGTCAGAATGTTTGGCACCTCCAAAGCAGAACCTCCAGAGTTTTTGCTTAGAAGACACCTGATATTATAGATAGGGATGTTCGGAACGGAATTCCAAAAATTCGAAAATTTTTTTCGGAATTAAAGTTTTTTGAACTGCGATATGTTGAAAGTGTACTCAAAAAATTTATCCTCGATGTCGATCGGAATTATTGTCATAATTTGTTTTTTGAAATCGGTTCGTCAATTTTTCTCGCTTGGTGATGGGAAAGTGGAATTCCGAAAATCCGGAAATTAAAAATCGGAATATTTCTGGACTCCAAAATTTCGGAATTCGGAATTTTTGACATTTCGAATATC</canonical>
            <polymorphic>AAATTTGCGAATTTGAGAGTTACAGAAGTTTTGTTAGACTTATTTCCTTCATCACAATGTCTAAGATTATATGCATTAAAACACTTTTCATTAACTGACTTTTCGAATTCTCAAAAATTCAAATCTCCTCATATCCGAGATGTTAAATTCCGAAACTACCGAGATCCTGAGTTTCCAAAAAATCATTTTCTTAAGCTCAAAATTTCCTAATTTTCGAATTTGTGAGCATAGGCCCTAAAAAACAGCCCCTGTAAAAGTGACGGACTCTCTTTATTAGATTACGGGTATTGTTGTTTATTAAAATTTGAATTTGGAATTTCCCGAGTTTCTTGAATTTTCTGATGTTCCCAAATTTCTGAATTTCAAGATGATTAGACTTTTGTGATTCTAGAACCCGGAATATAAAAATTCCAGAATTTTTAAAATTCTGGGTTTTTCAATCCTATTTTTTCATGAATTTTCTAATTTATGATTGTCGAGGTTTCTGAATTTCAAAAGAWCAGATTACGCATACACTTGACTTTTTCTGAGCCTATGATTCTAAATCACGTTGTAATTGTAGGAAAGGGGCCACAATGCCTGTATTTTTATAGAGAAGGCTAGTCCTCTTTTTCAAGTCCAGTAGGGGCTTACTTTGAGTGTTAAACAAATTGGTGGCGAGAGTCAGAATGTTTGGCACCTCCAAAGCAGAACCTCCAGAGTTTTTGCTTAGAAGACACCTGATATTATAGATAGGGATGTTCGGAACGGAATTCCAAAAATTCGAAAATTTTTTTCGGAATTAAAGTTTTTTGAACTGCGATATGTTGAAAGTGTACTCAAAAAATTTATCCTCGATGTCGATCGGAATTATTGTCATAATTTGTTTTTTGAAATCGGTTCGTCAATTTTTCTCGCTTGGTGATGGGAAAGTGGAATTCCGAAAATCCGGAAATTAAAAATCGGAATATTTCTGGACTCCAAAATTTCGGAATTCGGAATTTTTGACATTTCGAATATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>344 335 162 159</canonical_bands>
                <polymorphic_bands>679 162 159</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>189 138 136 129 78 75 68 34 26 26 23 23 17 16 15 7</canonical_bands>
                <polymorphic_bands>189 138 136 129 78 75 68 42 34 26 23 23 17 15 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAGTTTCTTGAATTTTCTGAT</pcr_primer_p1>
		<pcr_primer_p2>CTTTCCTACAATTACAACGTGAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CGAGTTTCTTGAATTTTCTGATGTTCCCAAATTTCTGAATTTCAAGATGATTAGACTTTTGTGATTCTAGAACCCGGAATATAAAAATTCCAGAATTTTTAAAATTCTGGGTTTTTCAATCCTATTTTTTCATGAATTTTCTAATTTATGATTGTCGAGGTTTCTGAATTTCAAAAGATCAGATTACGCATACACTTGACTTTTTCTGAGCCTATGATTCTAAATCACGTTGTAATTGTAGGAAAG</canonical_amplicon>
		<polymorphic_amplicon>CGAGTTTCTTGAATTTTCTGATGTTCCCAAATTTCTGAATTTCAAGATGATTAGACTTTTGTGATTCTAGAACCCGGAATATAAAAATTCCAGAATTTTTAAAATTCTGGGTTTTTCAATCCTATTTTTTCATGAATTTTCTAATTTATGATTGTCGAGGTTTCTGAATTTCAAAAGAWCAGATTACGCATACACTTGACTTTTTCTGAGCCTATGATTCTAAATCACGTTGTAATTGTAGGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31126</snp_id>
        <super_contig>c005800991.Contig1</super_contig>
        <contig_pos>24413</contig_pos>
        <strand></strand>
        <context>ggaaatagct[A/G]agaaagtatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTCTGAAAATGTGAAAAAACAGGCGTTTTTCAGAAATCGGGAAATAGCT</left_flank>
        <right_flank>AGAAAGTATTAACTGCCAAAAAATTCTGTGAATGCAAATTTTCTAAATCT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCTTGTATTGACGAGTTTGCTCTTGACGTCCGGCGTCAACAACGACACGCTCTTCAGCATTTCGCTGAAAAGTAAGCATTGACGCTTTAGAAAAAAGCAGAACAATGAGCAAAACAATAGGGAAGGTGCTGTGTTTGTGCGCATACCTTGGTCGATGGACTGCGAAGAATTCCGATTATACTGTCCAACTTTTTGTTGATTTTTGAGAGTTGGAACTGAATTATTGTAGTTCGGAACTAGGTGTTTGATGTTTATCCTACCTCTGATTCAAAATCAGCGTGATAGTTGTGGCTTACAGTTACATTTTGGGGACGTTCGGGTTTTGGATCCCTTGGTGGATAAGCAGTTGGGTTTCTCATCACATTTTCAAAGCGGTCATTGTGCTGAAATTGAAAATCTTCAGCTATTTTCCGATTTTTGAATGACACCAGTTTTTGGCTCGTTTTTGTTCTGAAAATGTGAAAAAACAGGCGTTTTTCAGAAATCGGGAAATAGCTAAGAAAGTATTAACTGCCAAAAAATTCTGTGAATGCAAATTTTCTAAATCTACTATTTTACACCCTCTAACATTTCTAGAGTGACCGGAAATTTGACAAGTGAGTTTCAGACTCCTGAAAATGATCAAAATAGGCAAAATGCAACTGAAAACGACGTTTTTGTCTATCTTATTCGCCGTTGCTGTAAGCGATGTTGTTGCAAGTAGTCTTGATGTCTAATTGTTTATCTTAGCGGCTTTTTTAGAATCAGAAGTCAGAAACCTATACGTTAAAGTCAAAGAAATTTCACCCCGTATATAATAAAAACTACCAAGAACCGGTATCTATTTAGCCGCTCTTCATTAGCATAATAATGTTAACTTACATCATCGATGAAGCTTCTCCGATAGATAATCTCCTTTTTGGTTACCAGAGGTGGATGATGGCGAGACATGGTCGAAAATATGATCGACGAATGAAATGCAATATGAAGATGAAAAATGATTATGTTTTGAATCCATC</canonical>
            <polymorphic>ATCCTTGTATTGACGAGTTTGCTCTTGACGTCCGGCGTCAACAACGACACGCTCTTCAGCATTTCGCTGAAAAGTAAGCATTGACGCTTTAGAAAAAAGCAGAACAATGAGCAAAACAATAGGGAAGGTGCTGTGTTTGTGCGCATACCTTGGTCGATGGACTGCGAAGAATTCCGATTATACTGTCCAACTTTTTGTTGATTTTTGAGAGTTGGAACTGAATTATTGTAGTTCGGAACTAGGTGTTTGATGTTTATCCTACCTCTGATTCAAAATCAGCGTGATAGTTGTGGCTTACAGTTACATTTTGGGGACGTTCGGGTTTTGGATCCCTTGGTGGATAAGCAGTTGGGTTTCTCATCACATTTTCAAAGCGGTCATTGTGCTGAAATTGAAAATCTTCAGCTATTTTCCGATTTTTGAATGACACCAGTTTTTGGCTCGTTTTTGTTCTGAAAATGTGAAAAAACAGGCGTTTTTCAGAAATCGGGAAATAGCTRAGAAAGTATTAACTGCCAAAAAATTCTGTGAATGCAAATTTTCTAAATCTACTATTTTACACCCTCTAACATTTCTAGAGTGACCGGAAATTTGACAAGTGAGTTTCAGACTCCTGAAAATGATCAAAATAGGCAAAATGCAACTGAAAACGACGTTTTTGTCTATCTTATTCGCCGTTGCTGTAAGCGATGTTGTTGCAAGTAGTCTTGATGTCTAATTGTTTATCTTAGCGGCTTTTTTAGAATCAGAAGTCAGAAACCTATACGTTAAAGTCAAAGAAATTTCACCCCGTATATAATAAAAACTACCAAGAACCGGTATCTATTTAGCCGCTCTTCATTAGCATAATAATGTTAACTTACATCATCGATGAAGCTTCTCCGATAGATAATCTCCTTTTTGGTTACCAGAGGTGGATGATGGCGAGACATGGTCGAAAATATGATCGACGAATGAAATGCAATATGAAGATGAAAAATGATTATGTTTTGAATCCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTGTGCTGAAATTGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CAAGACTACTTGCAACAACATC</pcr_primer_p2>
		<pcr_amplicon_size>332</pcr_amplicon_size>
		<canonical_amplicon>CATTGTGCTGAAATTGAAAATCTTCAGCTATTTTCCGATTTTTGAATGACACCAGTTTTTGGCTCGTTTTTGTTCTGAAAATGTGAAAAAACAGGCGTTTTTCAGAAATCGGGAAATAGCTAAGAAAGTATTAACTGCCAAAAAATTCTGTGAATGCAAATTTTCTAAATCTACTATTTTACACCCTCTAACATTTCTAGAGTGACCGGAAATTTGACAAGTGAGTTTCAGACTCCTGAAAATGATCAAAATAGGCAAAATGCAACTGAAAACGACGTTTTTGTCTATCTTATTCGCCGTTGCTGTAAGCGATGTTGTTGCAAGTAGTCTTG</canonical_amplicon>
		<polymorphic_amplicon>CATTGTGCTGAAATTGAAAATCTTCAGCTATTTTCCGATTTTTGAATGACACCAGTTTTTGGCTCGTTTTTGTTCTGAAAATGTGAAAAAACAGGCGTTTTTCAGAAATCGGGAAATAGCTRAGAAAGTATTAACTGCCAAAAAATTCTGTGAATGCAAATTTTCTAAATCTACTATTTTACACCCTCTAACATTTCTAGAGTGACCGGAAATTTGACAAGTGAGTTTCAGACTCCTGAAAATGATCAAAATAGGCAAAATGCAACTGAAAACGACGTTTTTGTCTATCTTATTCGCCGTTGCTGTAAGCGATGTTGTTGCAAGTAGTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31127</snp_id>
        <super_contig>c005800991.Contig1</super_contig>
        <contig_pos>24593</contig_pos>
        <strand></strand>
        <context>attcgccgtt[G/A]ctgtAAGCGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAGGCAAAATGCAACTGAAAACGACGTTTTTGTCTATCTTATTCGCCGTT</left_flank>
        <right_flank>CTGTAAGCGATGTTGTTGCAAGTAGTCTTGATGTCTAATTGTTTATCTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTGTCCAACTTTTTGTTGATTTTTGAGAGTTGGAACTGAATTATTGTAGTTCGGAACTAGGTGTTTGATGTTTATCCTACCTCTGATTCAAAATCAGCGTGATAGTTGTGGCTTACAGTTACATTTTGGGGACGTTCGGGTTTTGGATCCCTTGGTGGATAAGCAGTTGGGTTTCTCATCACATTTTCAAAGCGGTCATTGTGCTGAAATTGAAAATCTTCAGCTATTTTCCGATTTTTGAATGACACCAGTTTTTGGCTCGTTTTTGTTCTGAAAATGTGAAAAAACAGGCGTTTTTCAGAAATCGGGAAATAGCTAAGAAAGTATTAACTGCCAAAAAATTCTGTGAATGCAAATTTTCTAAATCTACTATTTTACACCCTCTAACATTTCTAGAGTGACCGGAAATTTGACAAGTGAGTTTCAGACTCCTGAAAATGATCAAAATAGGCAAAATGCAACTGAAAACGACGTTTTTGTCTATCTTATTCGCCGTTGCTGTAAGCGATGTTGTTGCAAGTAGTCTTGATGTCTAATTGTTTATCTTAGCGGCTTTTTTAGAATCAGAAGTCAGAAACCTATACGTTAAAGTCAAAGAAATTTCACCCCGTATATAATAAAAACTACCAAGAACCGGTATCTATTTAGCCGCTCTTCATTAGCATAATAATGTTAACTTACATCATCGATGAAGCTTCTCCGATAGATAATCTCCTTTTTGGTTACCAGAGGTGGATGATGGCGAGACATGGTCGAAAATATGATCGACGAATGAAATGCAATATGAAGATGAAAAATGATTATGTTTTGAATCCATCTCCCCTCTTTTTCTCGCATTTTTCTCTTTATTGTTTCCGCCTACATGGTCTGAGATCAGAACCATGATCTTTTTTCCATCAAAATCGTACTATCAAATTAGTAAACAAAAAAGCATAAATGTTTATGTATAGGGAAGAAGATGTACAGAAGAAGAAAAAGCACGAATGCAAAAAGAAGCG</canonical>
            <polymorphic>TACTGTCCAACTTTTTGTTGATTTTTGAGAGTTGGAACTGAATTATTGTAGTTCGGAACTAGGTGTTTGATGTTTATCCTACCTCTGATTCAAAATCAGCGTGATAGTTGTGGCTTACAGTTACATTTTGGGGACGTTCGGGTTTTGGATCCCTTGGTGGATAAGCAGTTGGGTTTCTCATCACATTTTCAAAGCGGTCATTGTGCTGAAATTGAAAATCTTCAGCTATTTTCCGATTTTTGAATGACACCAGTTTTTGGCTCGTTTTTGTTCTGAAAATGTGAAAAAACAGGCGTTTTTCAGAAATCGGGAAATAGCTAAGAAAGTATTAACTGCCAAAAAATTCTGTGAATGCAAATTTTCTAAATCTACTATTTTACACCCTCTAACATTTCTAGAGTGACCGGAAATTTGACAAGTGAGTTTCAGACTCCTGAAAATGATCAAAATAGGCAAAATGCAACTGAAAACGACGTTTTTGTCTATCTTATTCGCCGTTRCTGTAAGCGATGTTGTTGCAAGTAGTCTTGATGTCTAATTGTTTATCTTAGCGGCTTTTTTAGAATCAGAAGTCAGAAACCTATACGTTAAAGTCAAAGAAATTTCACCCCGTATATAATAAAAACTACCAAGAACCGGTATCTATTTAGCCGCTCTTCATTAGCATAATAATGTTAACTTACATCATCGATGAAGCTTCTCCGATAGATAATCTCCTTTTTGGTTACCAGAGGTGGATGATGGCGAGACATGGTCGAAAATATGATCGACGAATGAAATGCAATATGAAGATGAAAAATGATTATGTTTTGAATCCATCTCCCCTCTTTTTCTCGCATTTTTCTCTTTATTGTTTCCGCCTACATGGTCTGAGATCAGAACCATGATCTTTTTTCCATCAAAATCGTACTATCAAATTAGTAAACAAAAAAGCATAAATGTTTATGTATAGGGAAGAAGATGTACAGAAGAAGAAAAAGCACGAATGCAAAAAGAAGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTGTGCTGAAATTGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCGCTAAGATAAACAATTAGACA</pcr_primer_p2>
		<pcr_amplicon_size>356</pcr_amplicon_size>
		<canonical_amplicon>CATTGTGCTGAAATTGAAAATCTTCAGCTATTTTCCGATTTTTGAATGACACCAGTTTTTGGCTCGTTTTTGTTCTGAAAATGTGAAAAAACAGGCGTTTTTCAGAAATCGGGAAATAGCTAAGAAAGTATTAACTGCCAAAAAATTCTGTGAATGCAAATTTTCTAAATCTACTATTTTACACCCTCTAACATTTCTAGAGTGACCGGAAATTTGACAAGTGAGTTTCAGACTCCTGAAAATGATCAAAATAGGCAAAATGCAACTGAAAACGACGTTTTTGTCTATCTTATTCGCCGTTGCTGTAAGCGATGTTGTTGCAAGTAGTCTTGATGTCTAATTGTTTATCTTAGCGG</canonical_amplicon>
		<polymorphic_amplicon>CATTGTGCTGAAATTGAAAATCTTCAGCTATTTTCCGATTTTTGAATGACACCAGTTTTTGGCTCGTTTTTGTTCTGAAAATGTGAAAAAACAGGCGTTTTTCAGAAATCGGGAAATAGCTAAGAAAGTATTAACTGCCAAAAAATTCTGTGAATGCAAATTTTCTAAATCTACTATTTTACACCCTCTAACATTTCTAGAGTGACCGGAAATTTGACAAGTGAGTTTCAGACTCCTGAAAATGATCAAAATAGGCAAAATGCAACTGAAAACGACGTTTTTGTCTATCTTATTCGCCGTTRCTGTAAGCGATGTTGTTGCAAGTAGTCTTGATGTCTAATTGTTTATCTTAGCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31129</snp_id>
        <super_contig>c005800991.Contig1</super_contig>
        <contig_pos>58964</contig_pos>
        <strand>+</strand>
        <context>AAACCAGTAT[C/T]CTAAAATTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAGTACAGTATCCCAAGCTAGGTGCAGTATTCCATAAAAAACCAGTAT</left_flank>
        <right_flank>CTAAAATTTACAGAACCTCTAAATTTACAGTATCTCTAAAAGTACAGTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATCCTTAACAATAAAAAAGCATAGTATTCCTGTAATGGGAATAGAACGTAAGATGAGAAAATTACAGTATTTAGAATTAGAATGATTTGTTTTCGAACGGTGTCATATTTACGAACATACAGTATCCCAAAAAATCCTTGAAGTGGCAAAAGTACAGTATCCTGTAGGTAAAAGTACGGCCTATATCTGAAAAGAAAATTAAAAGTACACCTGAGCGCAAAGGAAGAGCAGGGGCTAATTGTTTATATTATGCTTATCGACGGGCGGGGCGTGAACTGCGACAGTGAAATCTGATCCCCCGACAGCAGATGAAAAAGTACAGTATTCGATAAGTACAGTAAGTTTGAAAGTACAGTATCTCTAACAGGGCAATATCCCAGAAAGGACAGTATCCCAAAAAAGTACAGGATTTCGAAAAGTGCAGTATCTTTATAAAAAAATAACCCAAAAAGTACAGTATCCCAAGCTAGGTGCAGTATTCCATAAAAAACCAGTATTCTAAAATTTACAGAACCTCTAAATTTACAGTATCTCTAAAAGTACAGTATCCCAGAAAGTACAGAATCCCGAAAAGTATGGTATTCCAAAAAATACATTACCCCTAAAAGTACAGTGTTTCTAAAAGTAGAGTATTAAAAAAGTACAGTACTTTTAACATTAGAAAAGTATTCCTGATATGGGAATAACTCATAAGATGGGAAAAGTACAGTACTTTGGTGTGAAGAATCTTCTTGGTGACCTTATCGGTTGGAGGCACAAGTTTATATAACAATTATTTATTTATGCGACGTTTCGGCAGCTTGCCATCTTCAGGAGACAGATTAATTACCAAAAAATGAACATACAAAGAATGCCAACCGGCGTAGATTTCAGGTGAAGCCTGATAGAAACCGTGAGGAGAAAGATAGAGAAAAGGGGAAAAACAAATCGTAAGGATGAATGCAATAAAGACCATAAAGACCGATAAGGTCACCAACAAGATTCTTCACACCTCTCCA</canonical>
            <polymorphic>GTATCCTTAACAATAAAAAAGCATAGTATTCCTGTAATGGGAATAGAACGTAAGATGAGAAAATTACAGTATTTAGAATTAGAATGATTTGTTTTCGAACGGTGTCATATTTACGAACATACAGTATCCCAAAAAATCCTTGAAGTGGCAAAAGTACAGTATCCTGTAGGTAAAAGTACGGCCTATATCTGAAAAGAAAATTAAAAGTACACCTGAGCGCAAAGGAAGAGCAGGGGCTAATTGTTTATATTATGCTTATCGACGGGCGGGGCGTGAACTGCGACAGTGAAATCTGATCCCCCGACAGCAGATGAAAAAGTACAGTATTCGATAAGTACAGTAAGTTTGAAAGTACAGTATCTCTAACAGGGCAATATCCCAGAAAGGACAGTATCCCAAAAAAGTACAGGATTTCGAAAAGTGCAGTATCTTTATAAAAAAATAACCCAAAAAGTACAGTATCCCAAGCTAGGTGCAGTATTCCATAAAAAACCAGTATYCTAAAATTTACAGAACCTCTAAATTTACAGTATCTCTAAAAGTACAGTATCCCAGAAAGTACAGAATCCCGAAAAGTATGGTATTCCAAAAAATACATTACCCCTAAAAGTACAGTGTTTCTAAAAGTAGAGTATTAAAAAAGTACAGTACTTTTAACATTAGAAAAGTATTCCTGATATGGGAATAACTCATAAGATGGGAAAAGTACAGTACTTTGGTGTGAAGAATCTTCTTGGTGACCTTATCGGTTGGAGGCACAAGTTTATATAACAATTATTTATTTATGCGACGTTTCGGCAGCTTGCCATCTTCAGGAGACAGATTAATTACCAAAAAATGAACATACAAAGAATGCCAACCGGCGTAGATTTCAGGTGAAGCCTGATAGAAACCGTGAGGAGAAAGATAGAGAAAAGGGGAAAAACAAATCGTAAGGATGAATGCAATAAAGACCATAAAGACCGATAAGGTCACCAACAAGATTCTTCACACCTCTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATAACCCAAAAAGTACAGTATC</pcr_primer_p1>
		<pcr_primer_p2>ATTCCCATATCAGGAATACTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAATAACCCAAAAAGTACAGTATCCCAAGCTAGGTGCAGTATTCCATAAAAAACCAGTATTCTAAAATTTACAGAACCTCTAAATTTACAGTATCTCTAAAAGTACAGTATCCCAGAAAGTACAGAATCCCGAAAAGTATGGTATTCCAAAAAATACATTACCCCTAAAAGTACAGTGTTTCTAAAAGTAGAGTATTAAAAAAGTACAGTACTTTTAACATTAGAAAAGTATTCCTGATATGGGAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAATAACCCAAAAAGTACAGTATCCCAAGCTAGGTGCAGTATTCCATAAAAAACCAGTATYCTAAAATTTACAGAACCTCTAAATTTACAGTATCTCTAAAAGTACAGTATCCCAGAAAGTACAGAATCCCGAAAAGTATGGTATTCCAAAAAATACATTACCCCTAAAAGTACAGTGTTTCTAAAAGTAGAGTATTAAAAAAGTACAGTACTTTTAACATTAGAAAAGTATTCCTGATATGGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31130</snp_id>
        <super_contig>c005800991.Contig1</super_contig>
        <contig_pos>97967</contig_pos>
        <strand>+</strand>
        <context>TTGAAACTGT[A/T]TTTTTCTCGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACGTTCCACTCGATTAATTGTCAACTTCTTGTCAATTTTTTGAAACTGT</left_flank>
        <right_flank>TTTTTCTCGCAATGTTTCTGATCCCATCGGCATGTAACAGTACTATCTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAACTCAGGAGGCAATGGTCGCCAAAAAATTGTCAGCTCCGAAGACAAAGGTAGAGGCTGTAGGAGCAGCTCGTGCTGCTCAAAAGTCAATAATCGATCGATTGGATCTACTACACCGCCAACTTGTCGCTCAAGCCACCGGTACTCGACTTCCAGAAAATATTATTTCGGAAAGCAGTGACGAAGCTACCAGCAGCGAAGCTTCCGATAATGGAATTGATGACGACGACACGTTCTACCCTGTGCCCGATCCAACTTTGGATTTGTTCTTTGACGCCCTCAATCAAGCACCGTTGTCTCACAAGGAATTCGGAGAAATCATGGCTAGTGGAATGTTTGGAAGTGAGGTCCCACCAGAGATGGTCAATGCTTTCCTTGCTCGAGTCATCAAAGTCACCTACTGCTGGGCTTCATTTGATATATCGGATATGACCAACCCAATCTACAACGTTCCACTCGATTAATTGTCAACTTCTTGTCAATTTTTTGAAACTGTTTTTTTCTCGCAATGTTTCTGATCCCATCGGCATGTAACAGTACTATCTGTCAAATGAGACAGTCTTCTCAGCACTAGCCTAACAAAGTCCCAGTTATACGTCAGTATCCCATCTACTTTATCAATTTCTTGTCAATTTAAGTACACTCGTTTGCTTTATATATGACGTTTATATTTTTCCATTTTTGCATTTTGATTTATCACTGGGAAAAATTATCGTGCAATGGTCGCTTGTCGCTTTTTCAATTTTTTTATCCACTGGTTTAAAACCTCTGAACTATCTTTAATATTCTTCAAACATTTATTTCAATATTTAAATAACTTTCTTTTTCAGATTGAACATGTATTTAAATACACCTCAGGACGAGAACGCGCTTGAGGAAATGAGAAAGCGAAGAATTTTAGCCGCCGTTCAGAAATCCAAGAATGACTGCGACGGTGGTACTATAAGTGCGGAGGAACTCGAAAAGCTGGAAACATCACAAAATCAAGAACAACCTC</canonical>
            <polymorphic>TCAAAACTCAGGAGGCAATGGTCGCCAAAAAATTGTCAGCTCCGAAGACAAAGGTAGAGGCTGTAGGAGCAGCTCGTGCTGCTCAAAAGTCAATAATCGATCGATTGGATCTACTACACCGCCAACTTGTCGCTCAAGCCACCGGTACTCGACTTCCAGAAAATATTATTTCGGAAAGCAGTGACGAAGCTACCAGCAGCGAAGCTTCCGATAATGGAATTGATGACGACGACACGTTCTACCCTGTGCCCGATCCAACTTTGGATTTGTTCTTTGACGCCCTCAATCAAGCACCGTTGTCTCACAAGGAATTCGGAGAAATCATGGCTAGTGGAATGTTTGGAAGTGAGGTCCCACCAGAGATGGTCAATGCTTTCCTTGCTCGAGTCATCAAAGTCACCTACTGCTGGGCTTCATTTGATATATCGGATATGACCAACCCAATCTACAACGTTCCACTCGATTAATTGTCAACTTCTTGTCAATTTTTTGAAACTGTWTTTTTCTCGCAATGTTTCTGATCCCATCGGCATGTAACAGTACTATCTGTCAAATGAGACAGTCTTCTCAGCACTAGCCTAACAAAGTCCCAGTTATACGTCAGTATCCCATCTACTTTATCAATTTCTTGTCAATTTAAGTACACTCGTTTGCTTTATATATGACGTTTATATTTTTCCATTTTTGCATTTTGATTTATCACTGGGAAAAATTATCGTGCAATGGTCGCTTGTCGCTTTTTCAATTTTTTTATCCACTGGTTTAAAACCTCTGAACTATCTTTAATATTCTTCAAACATTTATTTCAATATTTAAATAACTTTCTTTTTCAGATTGAACATGTATTTAAATACACCTCAGGACGAGAACGCGCTTGAGGAAATGAGAAAGCGAAGAATTTTAGCCGCCGTTCAGAAATCCAAGAATGACTGCGACGGTGGTACTATAAGTGCGGAGGAACTCGAAAAGCTGGAAACATCACAAAATCAAGAACAACCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTACAACGTTCCACTCGATTA</pcr_primer_p1>
		<pcr_primer_p2>TGCAAAAATGGAAAAATATAAAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CTACAACGTTCCACTCGATTAATTGTCAACTTCTTGTCAATTTTTTGAAACTGTTTTTTTCTCGCAATGTTTCTGATCCCATCGGCATGTAACAGTACTATCTGTCAAATGAGACAGTCTTCTCAGCACTAGCCTAACAAAGTCCCAGTTATACGTCAGTATCCCATCTACTTTATCAATTTCTTGTCAATTTAAGTACACTCGTTTGCTTTATATATGACGTTTATATTTTTCCATTTTTGCA</canonical_amplicon>
		<polymorphic_amplicon>CTACAACGTTCCACTCGATTAATTGTCAACTTCTTGTCAATTTTTTGAAACTGTWTTTTTCTCGCAATGTTTCTGATCCCATCGGCATGTAACAGTACTATCTGTCAAATGAGACAGTCTTCTCAGCACTAGCCTAACAAAGTCCCAGTTATACGTCAGTATCCCATCTACTTTATCAATTTCTTGTCAATTTAAGTACACTCGTTTGCTTTATATATGACGTTTATATTTTTCCATTTTTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31131</snp_id>
        <super_contig>c005800991.Contig1</super_contig>
        <contig_pos>209148</contig_pos>
        <strand>+</strand>
        <context>GGGGAGGAGG[A/T]TAGATGAGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCGCCTATCTTTTTTTTTTGAAAAAATCGTAGTGAAAAGGGGGAGGAGG</left_flank>
        <right_flank>TAGATGAGTGAATTCTTTTGTCGATCGCGACCTTGGGCGGTTCTTCATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGCCGTATCCTTTGAGCCTATTCTGATTGTTATTTTCGGTGAAAATCGTCAATCTCTGAGTTTTATCAAAAAACCAAGAAAAACTGATGAATAGTTCATATAGAAACTTTCGCAGTTTCAGTTTATACAAAATTTCTTGAACTTGGTTTTTGTCTTCTCTAAATCAAGTAGTTAGATCGCTATTCTACCAATTCGAAAACATAAAATGAAAAAAAAACAGCCTGACGGATCTCATTTGACAGATAAGACAAGAAAGTAACCAAATCAAAGAAAAAACAAACCAGCATAGTTAACCTGATACTGATATTTTCTTCATGTCTATTATACTTGTACCTTTTGATATCGTGTTAAACCTCGATAATGTATTTGTTTGTGTGTTTGTATATCTCTTGAGATAAATTTTTCAAAAAAGATGTTCGATAAATGAGTGTGTCATTATTTCATTCAAGTCGCCTATCTTTTTTTTTTGAAAAAATCGTAGTGAAAAGGGGGAGGAGGATAGATGAGTGAATTCTTTTGTCGATCGCGACCTTGGGCGGTTCTTCATTTAATTCAAATCTTCCCTTTTCGAATTCTCAATCTGCACTTACTCCTATGATTAATCATTTCATATTCTGTACACTTTTCATATTTCTATTTCAACTGGTATGTTGTATGAGACAACAATTTGCAAAGATCTTGGAGTTCCGGAAGATTGTTACAAGCATCTTTGCAATCCAACTGTTTTACCGGACATATTGAATCGTCATATTGTCTTTGAAAAACGATTGAATTGTGGGAGATATATTGTACCGATAACCAAATGCTTAACACAAGGAAGAGATGTAGGCACATGCTGCTTAGAGGAGGATCACCAAGAGATGTACAAGGATTGTTACGGAATGTGCAATGGTACTGTAGACAACTATGGAGACTATTTGAGAGAAGATTTTCTGATGTGTTTTGTTTCAAACGTTCCCACTATATTTCCTTGTCTCTTGGAAGGCTATAAATACTCAC</canonical>
            <polymorphic>CGGCCGTATCCTTTGAGCCTATTCTGATTGTTATTTTCGGTGAAAATCGTCAATCTCTGAGTTTTATCAAAAAACCAAGAAAAACTGATGAATAGTTCATATAGAAACTTTCGCAGTTTCAGTTTATACAAAATTTCTTGAACTTGGTTTTTGTCTTCTCTAAATCAAGTAGTTAGATCGCTATTCTACCAATTCGAAAACATAAAATGAAAAAAAAACAGCCTGACGGATCTCATTTGACAGATAAGACAAGAAAGTAACCAAATCAAAGAAAAAACAAACCAGCATAGTTAACCTGATACTGATATTTTCTTCATGTCTATTATACTTGTACCTTTTGATATCGTGTTAAACCTCGATAATGTATTTGTTTGTGTGTTTGTATATCTCTTGAGATAAATTTTTCAAAAAAGATGTTCGATAAATGAGTGTGTCATTATTTCATTCAAGTCGCCTATCTTTTTTTTTTGAAAAAATCGTAGTGAAAAGGGGGAGGAGGWTAGATGAGTGAATTCTTTTGTCGATCGCGACCTTGGGCGGTTCTTCATTTAATTCAAATCTTCCCTTTTCGAATTCTCAATCTGCACTTACTCCTATGATTAATCATTTCATATTCTGTACACTTTTCATATTTCTATTTCAACTGGTATGTTGTATGAGACAACAATTTGCAAAGATCTTGGAGTTCCGGAAGATTGTTACAAGCATCTTTGCAATCCAACTGTTTTACCGGACATATTGAATCGTCATATTGTCTTTGAAAAACGATTGAATTGTGGGAGATATATTGTACCGATAACCAAATGCTTAACACAAGGAAGAGATGTAGGCACATGCTGCTTAGAGGAGGATCACCAAGAGATGTACAAGGATTGTTACGGAATGTGCAATGGTACTGTAGACAACTATGGAGACTATTTGAGAGAAGATTTTCTGATGTGTTTTGTTTCAAACGTTCCCACTATATTTCCTTGTCTCTTGGAAGGCTATAAATACTCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCTCGATAATGTATTTGTTTG</pcr_primer_p1>
		<pcr_primer_p2>ATCATAGGAGTAAGTGCAGATTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACCTCGATAATGTATTTGTTTGTGTGTTTGTATATCTCTTGAGATAAATTTTTCAAAAAAGATGTTCGATAAATGAGTGTGTCATTATTTCATTCAAGTCGCCTATCTTTTTTTTTTGAAAAAATCGTAGTGAAAAGGGGGAGGAGGATAGATGAGTGAATTCTTTTGTCGATCGCGACCTTGGGCGGTTCTTCATTTAATTCAAATCTTCCCTTTTCGAATTCTCAATCTGCACTTACTCCTATGAT</canonical_amplicon>
		<polymorphic_amplicon>AACCTCGATAATGTATTTGTTTGTGTGTTTGTATATCTCTTGAGATAAATTTTTCAAAAAAGATGTTCGATAAATGAGTGTGTCATTATTTCATTCAAGTCGCCTATCTTTTTTTTTTGAAAAAATCGTAGTGAAAAGGGGGAGGAGGWTAGATGAGTGAATTCTTTTGTCGATCGCGACCTTGGGCGGTTCTTCATTTAATTCAAATCTTCCCTTTTCGAATTCTCAATCTGCACTTACTCCTATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31132</snp_id>
        <super_contig>c005800991.Contig1</super_contig>
        <contig_pos>256645</contig_pos>
        <strand>+</strand>
        <context>TCTCCAGTAA[C/T]GAAGAATGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGAGAAGTGATGGTTGGGACGTAGACACCTCCATATGATTCTCCAGTAA</left_flank>
        <right_flank>GAAGAATGGTCGGTTGATGTATTCTGGATAGACAGTAAGGAAGTCTTTGA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGCAGTCTTGATAAATGTTGTACACATCATTCAAGCTAGACCAGAATCTTGCTTGTCCGAGGTCAGCAACCTTGTTGGCACAGAAAGAGTTGTCGATTGGGTTAGCGGTTCCGTCAGGTCCAAGATGGATGTACTGAGCAAAATTGCAGTACTCAAACCATTGAGAGCTAGTCTTGGTTTGATTGCAGCACTGTTGGAGAGAATCGAAGTCACTGAAAACCATACTTTGTGAAATTTCAAATTTACTAAGAACCCCTACTCCTTGCTGAAGAGTCCGTGGAAGTAGCTCATCATGATGGCAGAGTTGAATTGTTGAACAGCCGACAACTCTCCGTTTCCAATGGACATACCAACCAAGTTCAGTTGTGGGAAATCTCCAGACTGTAAAAAATCTGTTATTTCAGGATTGTGGGGGTCTTGTATGTTTCACCTGGATTTTGTCAATGAGAAGAGAAGTGATGGTTGGGACGTAGACACCTCCATATGATTCTCCAGTAACGAAGAATGGTCGGTTGATGTATTCTGGATAGACAGTAAGGAAGTCTTTGAGAGCAAGGTAGGTGTCGGTGGCAGTCTGAAAATTGTATTTGTGAAAATTTTTAAAAAATCATTGGCTTTCTCACTCTCGCATCATCCCAGATAGTGTCATTATTCAAACTTGGATCTTGAACTGAGAATCCAACTCCTCGTGGAGACTCCAAGAAGATCACATTAGCAGCCTTGTTCCATGAATAAACGTTCTCGAAGAGTGTCTTGCCATCAGGATTTGGATGGAACGGTCCCAATTCTGTTAGCATAGCCATAAGTCCAGAGCATCCTGGTCCTCCGGTGAGCCACAAGACAAGTGGATCAGTGGTTGGATTTCCTTGAGACTCGACGAACCAATAGTGAAGGTAGTTTCCAGTCACTCCGTTCAAGTATCCAGAGTACTGCTTGAAGTTGAGTCCATAAGTGAGTCCAGGAAGGTTATAGACTCTATCGGCTTGCTTGCGAGTCCCT</canonical>
            <polymorphic>TAGCAGTCTTGATAAATGTTGTACACATCATTCAAGCTAGACCAGAATCTTGCTTGTCCGAGGTCAGCAACCTTGTTGGCACAGAAAGAGTTGTCGATTGGGTTAGCGGTTCCGTCAGGTCCAAGATGGATGTACTGAGCAAAATTGCAGTACTCAAACCATTGAGAGCTAGTCTTGGTTTGATTGCAGCACTGTTGGAGAGAATCGAAGTCACTGAAAACCATACTTTGTGAAATTTCAAATTTACTAAGAACCCCTACTCCTTGCTGAAGAGTCCGTGGAAGTAGCTCATCATGATGGCAGAGTTGAATTGTTGAACAGCCGACAACTCTCCGTTTCCAATGGACATACCAACCAAGTTCAGTTGTGGGAAATCTCCAGACTGTAAAAAATCTGTTATTTCAGGATTGTGGGGGTCTTGTATGTTTCACCTGGATTTTGTCAATGAGAAGAGAAGTGATGGTTGGGACGTAGACACCTCCATATGATTCTCCAGTAAYGAAGAATGGTCGGTTGATGTATTCTGGATAGACAGTAAGGAAGTCTTTGAGAGCAAGGTAGGTGTCGGTGGCAGTCTGAAAATTGTATTTGTGAAAATTTTTAAAAAATCATTGGCTTTCTCACTCTCGCATCATCCCAGATAGTGTCATTATTCAAACTTGGATCTTGAACTGAGAATCCAACTCCTCGTGGAGACTCCAAGAAGATCACATTAGCAGCCTTGTTCCATGAATAAACGTTCTCGAAGAGTGTCTTGCCATCAGGATTTGGATGGAACGGTCCCAATTCTGTTAGCATAGCCATAAGTCCAGAGCATCCTGGTCCTCCGGTGAGCCACAAGACAAGTGGATCAGTGGTTGGATTTCCTTGAGACTCGACGAACCAATAGTGAAGGTAGTTTCCAGTCACTCCGTTCAAGTATCCAGAGTACTGCTTGAAGTTGAGTCCATAAGTGAGTCCAGGAAGGTTATAGACTCTATCGGCTTGCTTGCGAGTCCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>409 286 209 96</canonical_bands>
                <polymorphic_bands>695 209 96</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATGTTTCACCTGGATTTTGT</pcr_primer_p1>
		<pcr_primer_p2>AGATCCAAGTTTGAATAATGACA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTATGTTTCACCTGGATTTTGTCAATGAGAAGAGAAGTGATGGTTGGGACGTAGACACCTCCATATGATTCTCCAGTAACGAAGAATGGTCGGTTGATGTATTCTGGATAGACAGTAAGGAAGTCTTTGAGAGCAAGGTAGGTGTCGGTGGCAGTCTGAAAATTGTATTTGTGAAAATTTTTAAAAAATCATTGGCTTTCTCACTCTCGCATCATCCCAGATAGTGTCATTATTCAAACTTGGATCT</canonical_amplicon>
		<polymorphic_amplicon>GTATGTTTCACCTGGATTTTGTCAATGAGAAGAGAAGTGATGGTTGGGACGTAGACACCTCCATATGATTCTCCAGTAAYGAAGAATGGTCGGTTGATGTATTCTGGATAGACAGTAAGGAAGTCTTTGAGAGCAAGGTAGGTGTCGGTGGCAGTCTGAAAATTGTATTTGTGAAAATTTTTAAAAAATCATTGGCTTTCTCACTCTCGCATCATCCCAGATAGTGTCATTATTCAAACTTGGATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31133</snp_id>
        <super_contig>c005800991.Contig1</super_contig>
        <contig_pos>321187</contig_pos>
        <strand>+</strand>
        <context>AATAGAGAAA[C/G]TAAGAACTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGGCTAATGTAATTAGCAATGAGGCAGATGTGTCAGCATGAATAGAGAAA</left_flank>
        <right_flank>TAAGAACTATTCAAGATGGGAGCTGAATCGCATGAAGTCTCCAGAAAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATTCTGATATATACTAATCCCTTTTATCACTGAAGTGGCGGGTGGGAAAAAAAAATAACAAAAGAAACCTTTTAGCGGGAAATAAATCGCAACTTATTTTTTGTTTTAAAATTGAAGAATTTCTAGAAGCTTATACGCGTTTTTCCGGCTACGTGGGCGGCAACCAGTCTAATAAAAGTAAAAAATACATGCACCTATGAGCAATCCATCAATGTCAAATGTACCCGATATGACACCGGATACTCGTAAATAATCGGAGACAAGATTACGAACGACAGTTCTAGAGGAAAAATCGTGTGGAAGTTTTTTTATTCCTCCCGAATGCGGAAAAAGAAGACTAAAAGGGAATAGGAAAACATCTTCTATTAGTAACTTGAATCCGGATCTTCCGAGATTCTAACTCAATACCCATCTTGGCACCCACACTTGTTCTGAATACGAGTTTCCGGGCTAATGTAATTAGCAATGAGGCAGATGTGTCAGCATGAATAGAGAAACTAAGAACTATTCAAGATGGGAGCTGAATCGCATGAAGTCTCCAGAAAAAGTGCAACGCAATTAAAATCAAGATCAAAGATAGAATCTCTATTTATTAGTTATACATAGAGATTGAAAACATTACTTGCAAAATAGGCAGGATTCAATAAATTAAAAAATGATGAATATAATACATCAAGAAAAACGGCAAGGTAATGAAAAAAAAAGGATTTCGTACATTTTTCAAATCACATCTGACGATTTCATACTGGTTGCTATCTAATGGAACATAAAGTCTAAAACATGTGACAGAAGACATGAGATCGAGGAAAAGGATGATTGAAAAAAAAGCTGTAAAAATATCACTATATACAAAAATACATTTAAAAAATTCATTGTGTGACAAGATTCCTCGCCTCAGCTGGTTTTATAAAGTCATCATGAAATCCCGTGTTGCTCATATCTCTAACGTTAACGTTCCTATCAAAAAGACGTTTCAAGAATTCGTTGTAGTTGTCCGG</canonical>
            <polymorphic>ATATTCTGATATATACTAATCCCTTTTATCACTGAAGTGGCGGGTGGGAAAAAAAAATAACAAAAGAAACCTTTTAGCGGGAAATAAATCGCAACTTATTTTTTGTTTTAAAATTGAAGAATTTCTAGAAGCTTATACGCGTTTTTCCGGCTACGTGGGCGGCAACCAGTCTAATAAAAGTAAAAAATACATGCACCTATGAGCAATCCATCAATGTCAAATGTACCCGATATGACACCGGATACTCGTAAATAATCGGAGACAAGATTACGAACGACAGTTCTAGAGGAAAAATCGTGTGGAAGTTTTTTTATTCCTCCCGAATGCGGAAAAAGAAGACTAAAAGGGAATAGGAAAACATCTTCTATTAGTAACTTGAATCCGGATCTTCCGAGATTCTAACTCAATACCCATCTTGGCACCCACACTTGTTCTGAATACGAGTTTCCGGGCTAATGTAATTAGCAATGAGGCAGATGTGTCAGCATGAATAGAGAAASTAAGAACTATTCAAGATGGGAGCTGAATCGCATGAAGTCTCCAGAAAAAGTGCAACGCAATTAAAATCAAGATCAAAGATAGAATCTCTATTTATTAGTTATACATAGAGATTGAAAACATTACTTGCAAAATAGGCAGGATTCAATAAATTAAAAAATGATGAATATAATACATCAAGAAAAACGGCAAGGTAATGAAAAAAAAAGGATTTCGTACATTTTTCAAATCACATCTGACGATTTCATACTGGTTGCTATCTAATGGAACATAAAGTCTAAAACATGTGACAGAAGACATGAGATCGAGGAAAAGGATGATTGAAAAAAAAGCTGTAAAAATATCACTATATACAAAAATACATTTAAAAAATTCATTGTGTGACAAGATTCCTCGCCTCAGCTGGTTTTATAAAGTCATCATGAAATCCCGTGTTGCTCATATCTCTAACGTTAACGTTCCTATCAAAAAGACGTTTCAAGAATTCGTTGTAGTTGTCCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 396 104</canonical_bands>
                <polymorphic_bands>896 104</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTCCGAGATTCTAACTCAATA</pcr_primer_p1>
		<pcr_primer_p2>CCTATTTTGCAAGTAATGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTCCGAGATTCTAACTCAATACCCATCTTGGCACCCACACTTGTTCTGAATACGAGTTTCCGGGCTAATGTAATTAGCAATGAGGCAGATGTGTCAGCATGAATAGAGAAACTAAGAACTATTCAAGATGGGAGCTGAATCGCATGAAGTCTCCAGAAAAAGTGCAACGCAATTAAAATCAAGATCAAAGATAGAATCTCTATTTATTAGTTATACATAGAGATTGAAAACATTACTTGCAAAATAGG</canonical_amplicon>
		<polymorphic_amplicon>TCTTCCGAGATTCTAACTCAATACCCATCTTGGCACCCACACTTGTTCTGAATACGAGTTTCCGGGCTAATGTAATTAGCAATGAGGCAGATGTGTCAGCATGAATAGAGAAASTAAGAACTATTCAAGATGGGAGCTGAATCGCATGAAGTCTCCAGAAAAAGTGCAACGCAATTAAAATCAAGATCAAAGATAGAATCTCTATTTATTAGTTATACATAGAGATTGAAAACATTACTTGCAAAATAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31134</snp_id>
        <super_contig>c005800991.Contig1</super_contig>
        <contig_pos>321598</contig_pos>
        <strand>+</strand>
        <context>CTGGTTTTAT[A/C]AAGTCATCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTAAAAAATTCATTGTGTGACAAGATTCCTCGCCTCAGCTGGTTTTAT</left_flank>
        <right_flank>AAGTCATCATGAAATCCCGTGTTGCTCATATCTCTAACGTTAACGTTCCT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCTTGGCACCCACACTTGTTCTGAATACGAGTTTCCGGGCTAATGTAATTAGCAATGAGGCAGATGTGTCAGCATGAATAGAGAAACTAAGAACTATTCAAGATGGGAGCTGAATCGCATGAAGTCTCCAGAAAAAGTGCAACGCAATTAAAATCAAGATCAAAGATAGAATCTCTATTTATTAGTTATACATAGAGATTGAAAACATTACTTGCAAAATAGGCAGGATTCAATAAATTAAAAAATGATGAATATAATACATCAAGAAAAACGGCAAGGTAATGAAAAAAAAAGGATTTCGTACATTTTTCAAATCACATCTGACGATTTCATACTGGTTGCTATCTAATGGAACATAAAGTCTAAAACATGTGACAGAAGACATGAGATCGAGGAAAAGGATGATTGAAAAAAAAGCTGTAAAAATATCACTATATACAAAAATACATTTAAAAAATTCATTGTGTGACAAGATTCCTCGCCTCAGCTGGTTTTATAAAGTCATCATGAAATCCCGTGTTGCTCATATCTCTAACGTTAACGTTCCTATCAAAAAGACGTTTCAAGAATTCGTTGTAGTTGTCCGGGAAATAAAATGAATATGTCACATTTGCCCAGAGAGTCTCCACTTTCAATTCGGTTTGCTGCAATGACCAAAAGTGATGTTTTCACATTTTTTTCGTATTTTCTATGACAGAAATGTTTTCTATTGTACAGTAAGATACACAAAAACATATTTTTAGTTGATTTTCGGACATCTTTAGGAGTCTGGAGCTCGGCAGTTTCCTAGTTTTCCAGCTTTAGCTCGGCATCTTGAAGTCATTCGTTCTTTTCACGTTTTTAGTACAAAAACAAGCCAGAAAATTTTAAAAAATTCTGCAAACAGCTGAAAAACTAGACATTGTTAAAGTTATCGAAAACTTGGTAGTCCAACTTCAGATTCCTGAAAATGGTCAAAACGGCCGGAAATCAACTGAAAATGCTTTTTATGTAGCTTA</canonical>
            <polymorphic>CATCTTGGCACCCACACTTGTTCTGAATACGAGTTTCCGGGCTAATGTAATTAGCAATGAGGCAGATGTGTCAGCATGAATAGAGAAACTAAGAACTATTCAAGATGGGAGCTGAATCGCATGAAGTCTCCAGAAAAAGTGCAACGCAATTAAAATCAAGATCAAAGATAGAATCTCTATTTATTAGTTATACATAGAGATTGAAAACATTACTTGCAAAATAGGCAGGATTCAATAAATTAAAAAATGATGAATATAATACATCAAGAAAAACGGCAAGGTAATGAAAAAAAAAGGATTTCGTACATTTTTCAAATCACATCTGACGATTTCATACTGGTTGCTATCTAATGGAACATAAAGTCTAAAACATGTGACAGAAGACATGAGATCGAGGAAAAGGATGATTGAAAAAAAAGCTGTAAAAATATCACTATATACAAAAATACATTTAAAAAATTCATTGTGTGACAAGATTCCTCGCCTCAGCTGGTTTTATMAAGTCATCATGAAATCCCGTGTTGCTCATATCTCTAACGTTAACGTTCCTATCAAAAAGACGTTTCAAGAATTCGTTGTAGTTGTCCGGGAAATAAAATGAATATGTCACATTTGCCCAGAGAGTCTCCACTTTCAATTCGGTTTGCTGCAATGACCAAAAGTGATGTTTTCACATTTTTTTCGTATTTTCTATGACAGAAATGTTTTCTATTGTACAGTAAGATACACAAAAACATATTTTTAGTTGATTTTCGGACATCTTTAGGAGTCTGGAGCTCGGCAGTTTCCTAGTTTTCCAGCTTTAGCTCGGCATCTTGAAGTCATTCGTTCTTTTCACGTTTTTAGTACAAAAACAAGCCAGAAAATTTTAAAAAATTCTGCAAACAGCTGAAAAACTAGACATTGTTAAAGTTATCGAAAACTTGGTAGTCCAACTTCAGATTCCTGAAAATGGTCAAAACGGCCGGAAATCAACTGAAAATGCTTTTTATGTAGCTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCACATCTGACGATTTCATACT</pcr_primer_p1>
		<pcr_primer_p2>GAAACGTCTTTTTGATAGGAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATCACATCTGACGATTTCATACTGGTTGCTATCTAATGGAACATAAAGTCTAAAACATGTGACAGAAGACATGAGATCGAGGAAAAGGATGATTGAAAAAAAAGCTGTAAAAATATCACTATATACAAAAATACATTTAAAAAATTCATTGTGTGACAAGATTCCTCGCCTCAGCTGGTTTTATAAAGTCATCATGAAATCCCGTGTTGCTCATATCTCTAACGTTAACGTTCCTATCAAAAAGACGTTTC</canonical_amplicon>
		<polymorphic_amplicon>ATCACATCTGACGATTTCATACTGGTTGCTATCTAATGGAACATAAAGTCTAAAACATGTGACAGAAGACATGAGATCGAGGAAAAGGATGATTGAAAAAAAAGCTGTAAAAATATCACTATATACAAAAATACATTTAAAAAATTCATTGTGTGACAAGATTCCTCGCCTCAGCTGGTTTTATMAAGTCATCATGAAATCCCGTGTTGCTCATATCTCTAACGTTAACGTTCCTATCAAAAAGACGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31135</snp_id>
        <super_contig>c005900641.Contig6</super_contig>
        <contig_pos>54354</contig_pos>
        <strand>+</strand>
        <context>GTGACTTTCA[A/T]GTATTGAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTAAAACTGAGCAATGGAAAAAAGCAGAGGAATTCAAATGTGACTTTCA</left_flank>
        <right_flank>GTATTGAATCTGGACGCAAGAGATATTTGTCATTTTACAAGTATGTCCAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAGAAAGACGAGAACAAGATAGTGTTCGCGTTTGCGGACTTCGGTGGTACTATCTATCGCATCGAGTATTCTGAATTTGGAAATTCTAGAAATTTTCAAGAAACTTGGAAAATTTTCGAAAACTCGAATATTGTGGATGTGGCGATTCGAGATCTGGAATTGGTGTTGAGATTTCAAAAGTCCAAATTATACCGAATATATTTCGATGTGAATGATTTTCAACTATCACCTGATTCATCGATTTACAAACTTTCTGTTAAACTGAGTAATCTGTGCATAAGGATCAATCGAAAAATCAAAACAGAGCAATTATACCTCAAAAAATGCAATCAATCTCAAATTATGAAATTCATACAGTTTACTGATCCGGAAGCGTTGGAAAAACTCAGTTTTTTCGCGGACGATGATGATATTGATGACAGAATTGAAATTGAAATTGATGATATTGCTAAAACTGAGCAATGGAAAAAAGCAGAGGAATTCAAATGTGACTTTCAAGTATTGAATCTGGACGCAAGAGATATTTGTCATTTTACAAGTATGTCCATAAAAACTCATTCCATTTCTGCAAGTGATTTGGAGTTTTTGAAAAAGGTATTCAATTTTGAATTCAAATTTTTATAATTGAAATTGTTTCAGACTTTTATCAATTCATCAACATTCGTGTATGCGTTTTTTGAGTTGACAATTTTCAATGGAAACGAGATAATTTCCAATTTGTGGGGCCCTGCGTTTATTACCGAACTTTCACGTAATTGGTATTTTCGAATCAAGGATTTGGAGGATGAAGTTCTGCACATCGAGATTCGTCAAAACTTTATAAATTTTCATGTTTTTGAATGGAGATATGTTTTGACTGGAGCGAGGGTACAAGATTATAACGAAAGTTGATTTGTCGTTTTCAAACTGTTAGCGAAATTGTTGTTTTGAATTATTTTAACGAAAAAATCACATGGATTGTTTCCAATTTTATTAAAATTCATGTTTGTTTCAAATAA</canonical>
            <polymorphic>CAAAGAAAGACGAGAACAAGATAGTGTTCGCGTTTGCGGACTTCGGTGGTACTATCTATCGCATCGAGTATTCTGAATTTGGAAATTCTAGAAATTTTCAAGAAACTTGGAAAATTTTCGAAAACTCGAATATTGTGGATGTGGCGATTCGAGATCTGGAATTGGTGTTGAGATTTCAAAAGTCCAAATTATACCGAATATATTTCGATGTGAATGATTTTCAACTATCACCTGATTCATCGATTTACAAACTTTCTGTTAAACTGAGTAATCTGTGCATAAGGATCAATCGAAAAATCAAAACAGAGCAATTATACCTCAAAAAATGCAATCAATCTCAAATTATGAAATTCATACAGTTTACTGATCCGGAAGCGTTGGAAAAACTCAGTTTTTTCGCGGACGATGATGATATTGATGACAGAATTGAAATTGAAATTGATGATATTGCTAAAACTGAGCAATGGAAAAAAGCAGAGGAATTCAAATGTGACTTTCAWGTATTGAATCTGGACGCAAGAGATATTTGTCATTTTACAAGTATGTCCATAAAAACTCATTCCATTTCTGCAAGTGATTTGGAGTTTTTGAAAAAGGTATTCAATTTTGAATTCAAATTTTTATAATTGAAATTGTTTCAGACTTTTATCAATTCATCAACATTCGTGTATGCGTTTTTTGAGTTGACAATTTTCAATGGAAACGAGATAATTTCCAATTTGTGGGGCCCTGCGTTTATTACCGAACTTTCACGTAATTGGTATTTTCGAATCAAGGATTTGGAGGATGAAGTTCTGCACATCGAGATTCGTCAAAACTTTATAAATTTTCATGTTTTTGAATGGAGATATGTTTTGACTGGAGCGAGGGTACAAGATTATAACGAAAGTTGATTTGTCGTTTTCAAACTGTTAGCGAAATTGTTGTTTTGAATTATTTTAACGAAAAAATCACATGGATTGTTTCCAATTTTATTAAAATTCATGTTTGTTTCAAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATGATATTGATGACAGAATTG</pcr_primer_p1>
		<pcr_primer_p2>TGAATTGATAAAAGTCTGAAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGATGATATTGATGACAGAATTGAAATTGAAATTGATGATATTGCTAAAACTGAGCAATGGAAAAAAGCAGAGGAATTCAAATGTGACTTTCAAGTATTGAATCTGGACGCAAGAGATATTTGTCATTTTACAAGTATGTCCATAAAAACTCATTCCATTTCTGCAAGTGATTTGGAGTTTTTGAAAAAGGTATTCAATTTTGAATTCAAATTTTTATAATTGAAATTGTTTCAGACTTTTATCAATTCA</canonical_amplicon>
		<polymorphic_amplicon>TGATGATATTGATGACAGAATTGAAATTGAAATTGATGATATTGCTAAAACTGAGCAATGGAAAAAAGCAGAGGAATTCAAATGTGACTTTCAWGTATTGAATCTGGACGCAAGAGATATTTGTCATTTTACAAGTATGTCCATAAAAACTCATTCCATTTCTGCAAGTGATTTGGAGTTTTTGAAAAAGGTATTCAATTTTGAATTCAAATTTTTATAATTGAAATTGTTTCAGACTTTTATCAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31136</snp_id>
        <super_contig>c005900641.Contig6</super_contig>
        <contig_pos>66627</contig_pos>
        <strand>+</strand>
        <context>CGGCAACAAG[A/G]ACGTTCGGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATAACAAATTCGTCAGCGTGGTCAGTCAAGCAGCGAGACGGCAACAAG</left_flank>
        <right_flank>ACGTTCGGTTTCACACATCATTAATTAATTTTATTTATTTCATAAAATAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGCAAAGTCAGTACGAACGAAAAAGCTGCAACTCCAGCTTTTCGTGGCACTAGTTGTTCAGACAGTTATCCCATTATTTTTGATGTATCTACCGAATATGATTTTCACATGTTCCGCTTTGCTTGGCGGAGGAATTGGTGCATGGGCCAATGTTACAGTAGTCATGAACCACCTTTATCCGGCTATCGATCCATTTGTGATTCTGTTTATTATAAAAGGCTTCAGAGATACTTTAATTGGTAGGAAAAATTGAATTAAAAATTTAAATCCGGTCTGTCGAAAGTCGGCGACCGCCGACCAATCGGTTTGCACGATCGGCTGTTGGTAGGCTGGGTCGGCGGTCGGTCTGCTGATTTTTCCGACCGAATAAAAGCATTAAAAAGAATGGAAAATATTTTTTCAGAATTCAAAAATATTTTCTTCAGATTTCTTTTTTTGCCGTCAGAAAAATAACAAATTCGTCAGCGTGGTCAGTCAAGCAGCGAGACGGCAACAAGGACGTTCGGTTTCACACATCATTAATTAATTTTATTTATTTCATAAAATAATTAATAAAGTTAATTACAATACCTTTTCGCTATATTCCCAGCCTGTGCAGTTGCCAAACATGCAATGACCGCAGAAATTATTGCTAGAAATGCAGAACTTCCCATCTGAAATTCGTCTTATTAAATTATATATTTTTATTAAGTCTTCCGTTTCGGTCGGTCGAAAATCGGTAACCGCAAACCGACCCAGCCGATCTAACTATTTTATTTGCCCGCGTACGCATACACTCTTAGGAATGTCGACGCGCTAGTGTATAAATTTGGAACCGATCGGTCAGCTCAGCCGACAGTCAGTCGGTTGGGTCGGCTGGGTCGGCGGTCGGTCTTTCGACCAAATTCGCCGACCAAATGGAACCCTAATTTGTCATTAGGACTCACACTTTGATTGACTACTGTAGTCATCCAGAATTTAAAATTCACAACATTTATAGCCGTGAATGTAAACGCGGT</canonical>
            <polymorphic>CAAGCAAAGTCAGTACGAACGAAAAAGCTGCAACTCCAGCTTTTCGTGGCACTAGTTGTTCAGACAGTTATCCCATTATTTTTGATGTATCTACCGAATATGATTTTCACATGTTCCGCTTTGCTTGGCGGAGGAATTGGTGCATGGGCCAATGTTACAGTAGTCATGAACCACCTTTATCCGGCTATCGATCCATTTGTGATTCTGTTTATTATAAAAGGCTTCAGAGATACTTTAATTGGTAGGAAAAATTGAATTAAAAATTTAAATCCGGTCTGTCGAAAGTCGGCGACCGCCGACCAATCGGTTTGCACGATCGGCTGTTGGTAGGCTGGGTCGGCGGTCGGTCTGCTGATTTTTCCGACCGAATAAAAGCATTAAAAAGAATGGAAAATATTTTTTCAGAATTCAAAAATATTTTCTTCAGATTTCTTTTTTTGCCGTCAGAAAAATAACAAATTCGTCAGCGTGGTCAGTCAAGCAGCGAGACGGCAACAAGRACGTTCGGTTTCACACATCATTAATTAATTTTATTTATTTCATAAAATAATTAATAAAGTTAATTACAATACCTTTTCGCTATATTCCCAGCCTGTGCAGTTGCCAAACATGCAATGACCGCAGAAATTATTGCTAGAAATGCAGAACTTCCCATCTGAAATTCGTCTTATTAAATTATATATTTTTATTAAGTCTTCCGTTTCGGTCGGTCGAAAATCGGTAACCGCAAACCGACCCAGCCGATCTAACTATTTTATTTGCCCGCGTACGCATACACTCTTAGGAATGTCGACGCGCTAGTGTATAAATTTGGAACCGATCGGTCAGCTCAGCCGACAGTCAGTCGGTTGGGTCGGCTGGGTCGGCGGTCGGTCTTTCGACCAAATTCGCCGACCAAATGGAACCCTAATTTGTCATTAGGACTCACACTTTGATTGACTACTGTAGTCATCCAGAATTTAAAATTCACAACATTTATAGCCGTGAATGTAAACGCGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCGAATAAAAGCATTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GGGAATATAGCGAAAAGGTATT</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>GACCGAATAAAAGCATTAAAAAGAATGGAAAATATTTTTTCAGAATTCAAAAATATTTTCTTCAGATTTCTTTTTTTGCCGTCAGAAAAATAACAAATTCGTCAGCGTGGTCAGTCAAGCAGCGAGACGGCAACAAGGACGTTCGGTTTCACACATCATTAATTAATTTTATTTATTTCATAAAATAATTAATAAAGTTAATTACAATACCTTTTCGCTATATTCCC</canonical_amplicon>
		<polymorphic_amplicon>GACCGAATAAAAGCATTAAAAAGAATGGAAAATATTTTTTCAGAATTCAAAAATATTTTCTTCAGATTTCTTTTTTTGCCGTCAGAAAAATAACAAATTCGTCAGCGTGGTCAGTCAAGCAGCGAGACGGCAACAAGRACGTTCGGTTTCACACATCATTAATTAATTTTATTTATTTCATAAAATAATTAATAAAGTTAATTACAATACCTTTTCGCTATATTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31137</snp_id>
        <super_contig>c005900641.Contig6</super_contig>
        <contig_pos>66663</contig_pos>
        <strand></strand>
        <context>taattttatt[T/A]rtttcataaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GAGACGGCAACAAGGACGTTCGGTTTCACACATCATTAATTAATTTTATT</left_flank>
        <right_flank>ATTTCATAAAATAATTAATAAAGTTAATTACAATACCTTTTCGCTATATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCTTTTCGTGGCACTAGTTGTTCAGACAGTTATCCCATTATTTTTGATGTATCTACCGAATATGATTTTCACATGTTCCGCTTTGCTTGGCGGAGGAATTGGTGCATGGGCCAATGTTACAGTAGTCATGAACCACCTTTATCCGGCTATCGATCCATTTGTGATTCTGTTTATTATAAAAGGCTTCAGAGATACTTTAATTGGTAGGAAAAATTGAATTAAAAATTTAAATCCGGTCTGTCGAAAGTCGGCGACCGCCGACCAATCGGTTTGCACGATCGGCTGTTGGTAGGCTGGGTCGGCGGTCGGTCTGCTGATTTTTCCGACCGAATAAAAGCATTAAAAAGAATGGAAAATATTTTTTCAGAATTCAAAAATATTTTCTTCAGATTTCTTTTTTTGCCGTCAGAAAAATAACAAATTCGTCAGCGTGGTCAGTCAAGCAGCGAGACGGCAACAAGGACGTTCGGTTTCACACATCATTAATTAATTTTATTTATTTCATAAAATAATTAATAAAGTTAATTACAATACCTTTTCGCTATATTCCCAGCCTGTGCAGTTGCCAAACATGCAATGACCGCAGAAATTATTGCTAGAAATGCAGAACTTCCCATCTGAAATTCGTCTTATTAAATTATATATTTTTATTAAGTCTTCCGTTTCGGTCGGTCGAAAATCGGTAACCGCAAACCGACCCAGCCGATCTAACTATTTTATTTGCCCGCGTACGCATACACTCTTAGGAATGTCGACGCGCTAGTGTATAAATTTGGAACCGATCGGTCAGCTCAGCCGACAGTCAGTCGGTTGGGTCGGCTGGGTCGGCGGTCGGTCTTTCGACCAAATTCGCCGACCAAATGGAACCCTAATTTGTCATTAGGACTCACACTTTGATTGACTACTGTAGTCATCCAGAATTTAAAATTCACAACATTTATAGCCGTGAATGTAAACGCGGTAACTTGAAGGCATGCAATCAAAAGACAAAATATAAG</canonical>
            <polymorphic>CAGCTTTTCGTGGCACTAGTTGTTCAGACAGTTATCCCATTATTTTTGATGTATCTACCGAATATGATTTTCACATGTTCCGCTTTGCTTGGCGGAGGAATTGGTGCATGGGCCAATGTTACAGTAGTCATGAACCACCTTTATCCGGCTATCGATCCATTTGTGATTCTGTTTATTATAAAAGGCTTCAGAGATACTTTAATTGGTAGGAAAAATTGAATTAAAAATTTAAATCCGGTCTGTCGAAAGTCGGCGACCGCCGACCAATCGGTTTGCACGATCGGCTGTTGGTAGGCTGGGTCGGCGGTCGGTCTGCTGATTTTTCCGACCGAATAAAAGCATTAAAAAGAATGGAAAATATTTTTTCAGAATTCAAAAATATTTTCTTCAGATTTCTTTTTTTGCCGTCAGAAAAATAACAAATTCGTCAGCGTGGTCAGTCAAGCAGCGAGACGGCAACAAGGACGTTCGGTTTCACACATCATTAATTAATTTTATTWATTTCATAAAATAATTAATAAAGTTAATTACAATACCTTTTCGCTATATTCCCAGCCTGTGCAGTTGCCAAACATGCAATGACCGCAGAAATTATTGCTAGAAATGCAGAACTTCCCATCTGAAATTCGTCTTATTAAATTATATATTTTTATTAAGTCTTCCGTTTCGGTCGGTCGAAAATCGGTAACCGCAAACCGACCCAGCCGATCTAACTATTTTATTTGCCCGCGTACGCATACACTCTTAGGAATGTCGACGCGCTAGTGTATAAATTTGGAACCGATCGGTCAGCTCAGCCGACAGTCAGTCGGTTGGGTCGGCTGGGTCGGCGGTCGGTCTTTCGACCAAATTCGCCGACCAAATGGAACCCTAATTTGTCATTAGGACTCACACTTTGATTGACTACTGTAGTCATCCAGAATTTAAAATTCACAACATTTATAGCCGTGAATGTAAACGCGGTAACTTGAAGGCATGCAATCAAAAGACAAAATATAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCGAATAAAAGCATTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GGGAATATAGCGAAAAGGTATT</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>GACCGAATAAAAGCATTAAAAAGAATGGAAAATATTTTTTCAGAATTCAAAAATATTTTCTTCAGATTTCTTTTTTTGCCGTCAGAAAAATAACAAATTCGTCAGCGTGGTCAGTCAAGCAGCGAGACGGCAACAAGGACGTTCGGTTTCACACATCATTAATTAATTTTATTTATTTCATAAAATAATTAATAAAGTTAATTACAATACCTTTTCGCTATATTCCC</canonical_amplicon>
		<polymorphic_amplicon>GACCGAATAAAAGCATTAAAAAGAATGGAAAATATTTTTTCAGAATTCAAAAATATTTTCTTCAGATTTCTTTTTTTGCCGTCAGAAAAATAACAAATTCGTCAGCGTGGTCAGTCAAGCAGCGAGACGGCAACAAGGACGTTCGGTTTCACACATCATTAATTAATTTTATTWATTTCATAAAATAATTAATAAAGTTAATTACAATACCTTTTCGCTATATTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31138</snp_id>
        <super_contig>c005900641.Contig6</super_contig>
        <contig_pos>66664</contig_pos>
        <strand></strand>
        <context>aattttattw[A/G]tttcataaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGACGGCAACAAGGACGTTCGGTTTCACACATCATTAATTAATTTTATTT</left_flank>
        <right_flank>TTTCATAAAATAATTAATAAAGTTAATTACAATACCTTTTCGCTATATTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTTTTCGTGGCACTAGTTGTTCAGACAGTTATCCCATTATTTTTGATGTATCTACCGAATATGATTTTCACATGTTCCGCTTTGCTTGGCGGAGGAATTGGTGCATGGGCCAATGTTACAGTAGTCATGAACCACCTTTATCCGGCTATCGATCCATTTGTGATTCTGTTTATTATAAAAGGCTTCAGAGATACTTTAATTGGTAGGAAAAATTGAATTAAAAATTTAAATCCGGTCTGTCGAAAGTCGGCGACCGCCGACCAATCGGTTTGCACGATCGGCTGTTGGTAGGCTGGGTCGGCGGTCGGTCTGCTGATTTTTCCGACCGAATAAAAGCATTAAAAAGAATGGAAAATATTTTTTCAGAATTCAAAAATATTTTCTTCAGATTTCTTTTTTTGCCGTCAGAAAAATAACAAATTCGTCAGCGTGGTCAGTCAAGCAGCGAGACGGCAACAAGGACGTTCGGTTTCACACATCATTAATTAATTTTATTTATTTCATAAAATAATTAATAAAGTTAATTACAATACCTTTTCGCTATATTCCCAGCCTGTGCAGTTGCCAAACATGCAATGACCGCAGAAATTATTGCTAGAAATGCAGAACTTCCCATCTGAAATTCGTCTTATTAAATTATATATTTTTATTAAGTCTTCCGTTTCGGTCGGTCGAAAATCGGTAACCGCAAACCGACCCAGCCGATCTAACTATTTTATTTGCCCGCGTACGCATACACTCTTAGGAATGTCGACGCGCTAGTGTATAAATTTGGAACCGATCGGTCAGCTCAGCCGACAGTCAGTCGGTTGGGTCGGCTGGGTCGGCGGTCGGTCTTTCGACCAAATTCGCCGACCAAATGGAACCCTAATTTGTCATTAGGACTCACACTTTGATTGACTACTGTAGTCATCCAGAATTTAAAATTCACAACATTTATAGCCGTGAATGTAAACGCGGTAACTTGAAGGCATGCAATCAAAAGACAAAATATAAGA</canonical>
            <polymorphic>AGCTTTTCGTGGCACTAGTTGTTCAGACAGTTATCCCATTATTTTTGATGTATCTACCGAATATGATTTTCACATGTTCCGCTTTGCTTGGCGGAGGAATTGGTGCATGGGCCAATGTTACAGTAGTCATGAACCACCTTTATCCGGCTATCGATCCATTTGTGATTCTGTTTATTATAAAAGGCTTCAGAGATACTTTAATTGGTAGGAAAAATTGAATTAAAAATTTAAATCCGGTCTGTCGAAAGTCGGCGACCGCCGACCAATCGGTTTGCACGATCGGCTGTTGGTAGGCTGGGTCGGCGGTCGGTCTGCTGATTTTTCCGACCGAATAAAAGCATTAAAAAGAATGGAAAATATTTTTTCAGAATTCAAAAATATTTTCTTCAGATTTCTTTTTTTGCCGTCAGAAAAATAACAAATTCGTCAGCGTGGTCAGTCAAGCAGCGAGACGGCAACAAGGACGTTCGGTTTCACACATCATTAATTAATTTTATTTRTTTCATAAAATAATTAATAAAGTTAATTACAATACCTTTTCGCTATATTCCCAGCCTGTGCAGTTGCCAAACATGCAATGACCGCAGAAATTATTGCTAGAAATGCAGAACTTCCCATCTGAAATTCGTCTTATTAAATTATATATTTTTATTAAGTCTTCCGTTTCGGTCGGTCGAAAATCGGTAACCGCAAACCGACCCAGCCGATCTAACTATTTTATTTGCCCGCGTACGCATACACTCTTAGGAATGTCGACGCGCTAGTGTATAAATTTGGAACCGATCGGTCAGCTCAGCCGACAGTCAGTCGGTTGGGTCGGCTGGGTCGGCGGTCGGTCTTTCGACCAAATTCGCCGACCAAATGGAACCCTAATTTGTCATTAGGACTCACACTTTGATTGACTACTGTAGTCATCCAGAATTTAAAATTCACAACATTTATAGCCGTGAATGTAAACGCGGTAACTTGAAGGCATGCAATCAAAAGACAAAATATAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCGAATAAAAGCATTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GGGAATATAGCGAAAAGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>GACCGAATAAAAGCATTAAAAAGAATGGAAAATATTTTTTCAGAATTCAAAAATATTTTCTTCAGATTTCTTTTTTTGCCGTCAGAAAAATAACAAATTCGTCAGCGTGGTCAGTCAAGCAGCGAGACGGCAACAAGGACGTTCGGTTTCACACATCATTAATTAATTTTATTTATTTCATAAAATAATTAATAAAGTTAATTACAATACCTTTTCGCTATATTCCC</canonical_amplicon>
		<polymorphic_amplicon>GACCGAATAAAAGCATTAAAAAGAATGGAAAATATTTTTTCAGAATTCAAAAATATTTTCTTCAGATTTCTTTTTTTGCCGTCAGAAAAATAACAAATTCGTCAGCGTGGTCAGTCAAGCAGCGAGACGGCAACAAGGACGTTCGGTTTCACACATCATTAATTAATTTTATTTRTTTCATAAAATAATTAATAAAGTTAATTACAATACCTTTTCGCTATATTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31139</snp_id>
        <super_contig>c005900641.Contig6</super_contig>
        <contig_pos>66721</contig_pos>
        <strand>+</strand>
        <context>ATTCCCAGCC[A/T]GTGCAGTTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATAATTAATAAAGTTAATTACAATACCTTTTCGCTATATTCCCAGCC</left_flank>
        <right_flank>GTGCAGTTGCCAAACATGCAATGACCGCAGAAATTATTGCTAGAAATGCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAATATGATTTTCACATGTTCCGCTTTGCTTGGCGGAGGAATTGGTGCATGGGCCAATGTTACAGTAGTCATGAACCACCTTTATCCGGCTATCGATCCATTTGTGATTCTGTTTATTATAAAAGGCTTCAGAGATACTTTAATTGGTAGGAAAAATTGAATTAAAAATTTAAATCCGGTCTGTCGAAAGTCGGCGACCGCCGACCAATCGGTTTGCACGATCGGCTGTTGGTAGGCTGGGTCGGCGGTCGGTCTGCTGATTTTTCCGACCGAATAAAAGCATTAAAAAGAATGGAAAATATTTTTTCAGAATTCAAAAATATTTTCTTCAGATTTCTTTTTTTGCCGTCAGAAAAATAACAAATTCGTCAGCGTGGTCAGTCAAGCAGCGAGACGGCAACAAGGACGTTCGGTTTCACACATCATTAATTAATTTTATTTATTTCATAAAATAATTAATAAAGTTAATTACAATACCTTTTCGCTATATTCCCAGCCTGTGCAGTTGCCAAACATGCAATGACCGCAGAAATTATTGCTAGAAATGCAGAACTTCCCATCTGAAATTCGTCTTATTAAATTATATATTTTTATTAAGTCTTCCGTTTCGGTCGGTCGAAAATCGGTAACCGCAAACCGACCCAGCCGATCTAACTATTTTATTTGCCCGCGTACGCATACACTCTTAGGAATGTCGACGCGCTAGTGTATAAATTTGGAACCGATCGGTCAGCTCAGCCGACAGTCAGTCGGTTGGGTCGGCTGGGTCGGCGGTCGGTCTTTCGACCAAATTCGCCGACCAAATGGAACCCTAATTTGTCATTAGGACTCACACTTTGATTGACTACTGTAGTCATCCAGAATTTAAAATTCACAACATTTATAGCCGTGAATGTAAACGCGGTAACTTGAAGGCATGCAATCAAAAGACAAAATATAAGAATCCCAAAAAAGTTTATACGAACTCCATGGGAACATCCTTGACGGTAGACTTTGAAC</canonical>
            <polymorphic>CGAATATGATTTTCACATGTTCCGCTTTGCTTGGCGGAGGAATTGGTGCATGGGCCAATGTTACAGTAGTCATGAACCACCTTTATCCGGCTATCGATCCATTTGTGATTCTGTTTATTATAAAAGGCTTCAGAGATACTTTAATTGGTAGGAAAAATTGAATTAAAAATTTAAATCCGGTCTGTCGAAAGTCGGCGACCGCCGACCAATCGGTTTGCACGATCGGCTGTTGGTAGGCTGGGTCGGCGGTCGGTCTGCTGATTTTTCCGACCGAATAAAAGCATTAAAAAGAATGGAAAATATTTTTTCAGAATTCAAAAATATTTTCTTCAGATTTCTTTTTTTGCCGTCAGAAAAATAACAAATTCGTCAGCGTGGTCAGTCAAGCAGCGAGACGGCAACAAGGACGTTCGGTTTCACACATCATTAATTAATTTTATTTATTTCATAAAATAATTAATAAAGTTAATTACAATACCTTTTCGCTATATTCCCAGCCWGTGCAGTTGCCAAACATGCAATGACCGCAGAAATTATTGCTAGAAATGCAGAACTTCCCATCTGAAATTCGTCTTATTAAATTATATATTTTTATTAAGTCTTCCGTTTCGGTCGGTCGAAAATCGGTAACCGCAAACCGACCCAGCCGATCTAACTATTTTATTTGCCCGCGTACGCATACACTCTTAGGAATGTCGACGCGCTAGTGTATAAATTTGGAACCGATCGGTCAGCTCAGCCGACAGTCAGTCGGTTGGGTCGGCTGGGTCGGCGGTCGGTCTTTCGACCAAATTCGCCGACCAAATGGAACCCTAATTTGTCATTAGGACTCACACTTTGATTGACTACTGTAGTCATCCAGAATTTAAAATTCACAACATTTATAGCCGTGAATGTAAACGCGGTAACTTGAAGGCATGCAATCAAAAGACAAAATATAAGAATCCCAAAAAAGTTTATACGAACTCCATGGGAACATCCTTGACGGTAGACTTTGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGTCAGAAAAATAACAAATTC</pcr_primer_p1>
		<pcr_primer_p2>AATTTCAGATGGGAAGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>CCGTCAGAAAAATAACAAATTCGTCAGCGTGGTCAGTCAAGCAGCGAGACGGCAACAAGGACGTTCGGTTTCACACATCATTAATTAATTTTATTTATTTCATAAAATAATTAATAAAGTTAATTACAATACCTTTTCGCTATATTCCCAGCCTGTGCAGTTGCCAAACATGCAATGACCGCAGAAATTATTGCTAGAAATGCAGAACTTCCCATCTGAAATT</canonical_amplicon>
		<polymorphic_amplicon>CCGTCAGAAAAATAACAAATTCGTCAGCGTGGTCAGTCAAGCAGCGAGACGGCAACAAGGACGTTCGGTTTCACACATCATTAATTAATTTTATTTATTTCATAAAATAATTAATAAAGTTAATTACAATACCTTTTCGCTATATTCCCAGCCWGTGCAGTTGCCAAACATGCAATGACCGCAGAAATTATTGCTAGAAATGCAGAACTTCCCATCTGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31140</snp_id>
        <super_contig>c005900641.Contig6</super_contig>
        <contig_pos>66743</contig_pos>
        <strand>+</strand>
        <context>AAACATGCAA[C/T]GACCGCAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAATACCTTTTCGCTATATTCCCAGCCTGTGCAGTTGCCAAACATGCAA</left_flank>
        <right_flank>GACCGCAGAAATTATTGCTAGAAATGCAGAACTTCCCATCTGAAATTCGT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCTTTGCTTGGCGGAGGAATTGGTGCATGGGCCAATGTTACAGTAGTCATGAACCACCTTTATCCGGCTATCGATCCATTTGTGATTCTGTTTATTATAAAAGGCTTCAGAGATACTTTAATTGGTAGGAAAAATTGAATTAAAAATTTAAATCCGGTCTGTCGAAAGTCGGCGACCGCCGACCAATCGGTTTGCACGATCGGCTGTTGGTAGGCTGGGTCGGCGGTCGGTCTGCTGATTTTTCCGACCGAATAAAAGCATTAAAAAGAATGGAAAATATTTTTTCAGAATTCAAAAATATTTTCTTCAGATTTCTTTTTTTGCCGTCAGAAAAATAACAAATTCGTCAGCGTGGTCAGTCAAGCAGCGAGACGGCAACAAGGACGTTCGGTTTCACACATCATTAATTAATTTTATTTATTTCATAAAATAATTAATAAAGTTAATTACAATACCTTTTCGCTATATTCCCAGCCTGTGCAGTTGCCAAACATGCAATGACCGCAGAAATTATTGCTAGAAATGCAGAACTTCCCATCTGAAATTCGTCTTATTAAATTATATATTTTTATTAAGTCTTCCGTTTCGGTCGGTCGAAAATCGGTAACCGCAAACCGACCCAGCCGATCTAACTATTTTATTTGCCCGCGTACGCATACACTCTTAGGAATGTCGACGCGCTAGTGTATAAATTTGGAACCGATCGGTCAGCTCAGCCGACAGTCAGTCGGTTGGGTCGGCTGGGTCGGCGGTCGGTCTTTCGACCAAATTCGCCGACCAAATGGAACCCTAATTTGTCATTAGGACTCACACTTTGATTGACTACTGTAGTCATCCAGAATTTAAAATTCACAACATTTATAGCCGTGAATGTAAACGCGGTAACTTGAAGGCATGCAATCAAAAGACAAAATATAAGAATCCCAAAAAAGTTTATACGAACTCCATGGGAACATCCTTGACGGTAGACTTTGAACTTAAAAAATTGTTATTCAATGA</canonical>
            <polymorphic>CGCTTTGCTTGGCGGAGGAATTGGTGCATGGGCCAATGTTACAGTAGTCATGAACCACCTTTATCCGGCTATCGATCCATTTGTGATTCTGTTTATTATAAAAGGCTTCAGAGATACTTTAATTGGTAGGAAAAATTGAATTAAAAATTTAAATCCGGTCTGTCGAAAGTCGGCGACCGCCGACCAATCGGTTTGCACGATCGGCTGTTGGTAGGCTGGGTCGGCGGTCGGTCTGCTGATTTTTCCGACCGAATAAAAGCATTAAAAAGAATGGAAAATATTTTTTCAGAATTCAAAAATATTTTCTTCAGATTTCTTTTTTTGCCGTCAGAAAAATAACAAATTCGTCAGCGTGGTCAGTCAAGCAGCGAGACGGCAACAAGGACGTTCGGTTTCACACATCATTAATTAATTTTATTTATTTCATAAAATAATTAATAAAGTTAATTACAATACCTTTTCGCTATATTCCCAGCCTGTGCAGTTGCCAAACATGCAAYGACCGCAGAAATTATTGCTAGAAATGCAGAACTTCCCATCTGAAATTCGTCTTATTAAATTATATATTTTTATTAAGTCTTCCGTTTCGGTCGGTCGAAAATCGGTAACCGCAAACCGACCCAGCCGATCTAACTATTTTATTTGCCCGCGTACGCATACACTCTTAGGAATGTCGACGCGCTAGTGTATAAATTTGGAACCGATCGGTCAGCTCAGCCGACAGTCAGTCGGTTGGGTCGGCTGGGTCGGCGGTCGGTCTTTCGACCAAATTCGCCGACCAAATGGAACCCTAATTTGTCATTAGGACTCACACTTTGATTGACTACTGTAGTCATCCAGAATTTAAAATTCACAACATTTATAGCCGTGAATGTAAACGCGGTAACTTGAAGGCATGCAATCAAAAGACAAAATATAAGAATCCCAAAAAAGTTTATACGAACTCCATGGGAACATCCTTGACGGTAGACTTTGAACTTAAAAAATTGTTATTCAATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGTCAGAAAAATAACAAATTC</pcr_primer_p1>
		<pcr_primer_p2>CGGGCAAATAAAATAGTTAGAT</pcr_primer_p2>
		<pcr_amplicon_size>325</pcr_amplicon_size>
		<canonical_amplicon>CCGTCAGAAAAATAACAAATTCGTCAGCGTGGTCAGTCAAGCAGCGAGACGGCAACAAGGACGTTCGGTTTCACACATCATTAATTAATTTTATTTATTTCATAAAATAATTAATAAAGTTAATTACAATACCTTTTCGCTATATTCCCAGCCTGTGCAGTTGCCAAACATGCAATGACCGCAGAAATTATTGCTAGAAATGCAGAACTTCCCATCTGAAATTCGTCTTATTAAATTATATATTTTTATTAAGTCTTCCGTTTCGGTCGGTCGAAAATCGGTAACCGCAAACCGACCCAGCCGATCTAACTATTTTATTTGCCCG</canonical_amplicon>
		<polymorphic_amplicon>CCGTCAGAAAAATAACAAATTCGTCAGCGTGGTCAGTCAAGCAGCGAGACGGCAACAAGGACGTTCGGTTTCACACATCATTAATTAATTTTATTTATTTCATAAAATAATTAATAAAGTTAATTACAATACCTTTTCGCTATATTCCCAGCCTGTGCAGTTGCCAAACATGCAAYGACCGCAGAAATTATTGCTAGAAATGCAGAACTTCCCATCTGAAATTCGTCTTATTAAATTATATATTTTTATTAAGTCTTCCGTTTCGGTCGGTCGAAAATCGGTAACCGCAAACCGACCCAGCCGATCTAACTATTTTATTTGCCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31141</snp_id>
        <super_contig>c005900641.Contig6</super_contig>
        <contig_pos>66901</contig_pos>
        <strand>+</strand>
        <context>CGCGTACGCA[A/T]ACACTCTTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCGCAAACCGACCCAGCCGATCTAACTATTTTATTTGCCCGCGTACGCA</left_flank>
        <right_flank>ACACTCTTAGGAATGTCGACGCGCTAGTGTATAAATTTGGAACCGATCGG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGTCGAAAGTCGGCGACCGCCGACCAATCGGTTTGCACGATCGGCTGTTGGTAGGCTGGGTCGGCGGTCGGTCTGCTGATTTTTCCGACCGAATAAAAGCATTAAAAAGAATGGAAAATATTTTTTCAGAATTCAAAAATATTTTCTTCAGATTTCTTTTTTTGCCGTCAGAAAAATAACAAATTCGTCAGCGTGGTCAGTCAAGCAGCGAGACGGCAACAAGGACGTTCGGTTTCACACATCATTAATTAATTTTATTTATTTCATAAAATAATTAATAAAGTTAATTACAATACCTTTTCGCTATATTCCCAGCCTGTGCAGTTGCCAAACATGCAATGACCGCAGAAATTATTGCTAGAAATGCAGAACTTCCCATCTGAAATTCGTCTTATTAAATTATATATTTTTATTAAGTCTTCCGTTTCGGTCGGTCGAAAATCGGTAACCGCAAACCGACCCAGCCGATCTAACTATTTTATTTGCCCGCGTACGCATACACTCTTAGGAATGTCGACGCGCTAGTGTATAAATTTGGAACCGATCGGTCAGCTCAGCCGACAGTCAGTCGGTTGGGTCGGCTGGGTCGGCGGTCGGTCTTTCGACCAAATTCGCCGACCAAATGGAACCCTAATTTGTCATTAGGACTCACACTTTGATTGACTACTGTAGTCATCCAGAATTTAAAATTCACAACATTTATAGCCGTGAATGTAAACGCGGTAACTTGAAGGCATGCAATCAAAAGACAAAATATAAGAATCCCAAAAAAGTTTATACGAACTCCATGGGAACATCCTTGACGGTAGACTTTGAACTTAAAAAATTGTTATTCAATGAATTTTCGATAAAAAAGTAAGCTTACACTGAAAATGCATACAACGCAAATAACGGGAAAAATGCACCGAATGCACCGAACATGCACCAACTGGCCGTGGAGAGCCAGCCTGGTTCATACTGCAATTTTTCAATTTTTTAACAATTTCTTAAAAGTTACC</canonical>
            <polymorphic>TCTGTCGAAAGTCGGCGACCGCCGACCAATCGGTTTGCACGATCGGCTGTTGGTAGGCTGGGTCGGCGGTCGGTCTGCTGATTTTTCCGACCGAATAAAAGCATTAAAAAGAATGGAAAATATTTTTTCAGAATTCAAAAATATTTTCTTCAGATTTCTTTTTTTGCCGTCAGAAAAATAACAAATTCGTCAGCGTGGTCAGTCAAGCAGCGAGACGGCAACAAGGACGTTCGGTTTCACACATCATTAATTAATTTTATTTATTTCATAAAATAATTAATAAAGTTAATTACAATACCTTTTCGCTATATTCCCAGCCTGTGCAGTTGCCAAACATGCAATGACCGCAGAAATTATTGCTAGAAATGCAGAACTTCCCATCTGAAATTCGTCTTATTAAATTATATATTTTTATTAAGTCTTCCGTTTCGGTCGGTCGAAAATCGGTAACCGCAAACCGACCCAGCCGATCTAACTATTTTATTTGCCCGCGTACGCAWACACTCTTAGGAATGTCGACGCGCTAGTGTATAAATTTGGAACCGATCGGTCAGCTCAGCCGACAGTCAGTCGGTTGGGTCGGCTGGGTCGGCGGTCGGTCTTTCGACCAAATTCGCCGACCAAATGGAACCCTAATTTGTCATTAGGACTCACACTTTGATTGACTACTGTAGTCATCCAGAATTTAAAATTCACAACATTTATAGCCGTGAATGTAAACGCGGTAACTTGAAGGCATGCAATCAAAAGACAAAATATAAGAATCCCAAAAAAGTTTATACGAACTCCATGGGAACATCCTTGACGGTAGACTTTGAACTTAAAAAATTGTTATTCAATGAATTTTCGATAAAAAAGTAAGCTTACACTGAAAATGCATACAACGCAAATAACGGGAAAAATGCACCGAATGCACCGAACATGCACCAACTGGCCGTGGAGAGCCAGCCTGGTTCATACTGCAATTTTTCAATTTTTTAACAATTTCTTAAAAGTTACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTGCTAGAAATGCAGAACTT</pcr_primer_p1>
		<pcr_primer_p2>AATTAGGGTTCCATTTGGTC</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>TTATTGCTAGAAATGCAGAACTTCCCATCTGAAATTCGTCTTATTAAATTATATATTTTTATTAAGTCTTCCGTTTCGGTCGGTCGAAAATCGGTAACCGCAAACCGACCCAGCCGATCTAACTATTTTATTTGCCCGCGTACGCATACACTCTTAGGAATGTCGACGCGCTAGTGTATAAATTTGGAACCGATCGGTCAGCTCAGCCGACAGTCAGTCGGTTGGGTCGGCTGGGTCGGCGGTCGGTCTTTCGACCAAATTCGCCGACCAAATGGAACCCTAATT</canonical_amplicon>
		<polymorphic_amplicon>TTATTGCTAGAAATGCAGAACTTCCCATCTGAAATTCGTCTTATTAAATTATATATTTTTATTAAGTCTTCCGTTTCGGTCGGTCGAAAATCGGTAACCGCAAACCGACCCAGCCGATCTAACTATTTTATTTGCCCGCGTACGCAWACACTCTTAGGAATGTCGACGCGCTAGTGTATAAATTTGGAACCGATCGGTCAGCTCAGCCGACAGTCAGTCGGTTGGGTCGGCTGGGTCGGCGGTCGGTCTTTCGACCAAATTCGCCGACCAAATGGAACCCTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31142</snp_id>
        <super_contig>c005900641.Contig6</super_contig>
        <contig_pos>66925</contig_pos>
        <strand>+</strand>
        <context>TGTCGACGCG[C/G]TAGTGTATAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AACTATTTTATTTGCCCGCGTACGCATACACTCTTAGGAATGTCGACGCG</left_flank>
        <right_flank>TAGTGTATAAATTTGGAACCGATCGGTCAGCTCAGCCGACAGTCAGTCGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCAATCGGTTTGCACGATCGGCTGTTGGTAGGCTGGGTCGGCGGTCGGTCTGCTGATTTTTCCGACCGAATAAAAGCATTAAAAAGAATGGAAAATATTTTTTCAGAATTCAAAAATATTTTCTTCAGATTTCTTTTTTTGCCGTCAGAAAAATAACAAATTCGTCAGCGTGGTCAGTCAAGCAGCGAGACGGCAACAAGGACGTTCGGTTTCACACATCATTAATTAATTTTATTTATTTCATAAAATAATTAATAAAGTTAATTACAATACCTTTTCGCTATATTCCCAGCCTGTGCAGTTGCCAAACATGCAATGACCGCAGAAATTATTGCTAGAAATGCAGAACTTCCCATCTGAAATTCGTCTTATTAAATTATATATTTTTATTAAGTCTTCCGTTTCGGTCGGTCGAAAATCGGTAACCGCAAACCGACCCAGCCGATCTAACTATTTTATTTGCCCGCGTACGCATACACTCTTAGGAATGTCGACGCGCTAGTGTATAAATTTGGAACCGATCGGTCAGCTCAGCCGACAGTCAGTCGGTTGGGTCGGCTGGGTCGGCGGTCGGTCTTTCGACCAAATTCGCCGACCAAATGGAACCCTAATTTGTCATTAGGACTCACACTTTGATTGACTACTGTAGTCATCCAGAATTTAAAATTCACAACATTTATAGCCGTGAATGTAAACGCGGTAACTTGAAGGCATGCAATCAAAAGACAAAATATAAGAATCCCAAAAAAGTTTATACGAACTCCATGGGAACATCCTTGACGGTAGACTTTGAACTTAAAAAATTGTTATTCAATGAATTTTCGATAAAAAAGTAAGCTTACACTGAAAATGCATACAACGCAAATAACGGGAAAAATGCACCGAATGCACCGAACATGCACCAACTGGCCGTGGAGAGCCAGCCTGGTTCATACTGCAATTTTTCAATTTTTTAACAATTTCTTAAAAGTTACCTACCGATTGAAACGGAACGATTCC</canonical>
            <polymorphic>ACCAATCGGTTTGCACGATCGGCTGTTGGTAGGCTGGGTCGGCGGTCGGTCTGCTGATTTTTCCGACCGAATAAAAGCATTAAAAAGAATGGAAAATATTTTTTCAGAATTCAAAAATATTTTCTTCAGATTTCTTTTTTTGCCGTCAGAAAAATAACAAATTCGTCAGCGTGGTCAGTCAAGCAGCGAGACGGCAACAAGGACGTTCGGTTTCACACATCATTAATTAATTTTATTTATTTCATAAAATAATTAATAAAGTTAATTACAATACCTTTTCGCTATATTCCCAGCCTGTGCAGTTGCCAAACATGCAATGACCGCAGAAATTATTGCTAGAAATGCAGAACTTCCCATCTGAAATTCGTCTTATTAAATTATATATTTTTATTAAGTCTTCCGTTTCGGTCGGTCGAAAATCGGTAACCGCAAACCGACCCAGCCGATCTAACTATTTTATTTGCCCGCGTACGCATACACTCTTAGGAATGTCGACGCGSTAGTGTATAAATTTGGAACCGATCGGTCAGCTCAGCCGACAGTCAGTCGGTTGGGTCGGCTGGGTCGGCGGTCGGTCTTTCGACCAAATTCGCCGACCAAATGGAACCCTAATTTGTCATTAGGACTCACACTTTGATTGACTACTGTAGTCATCCAGAATTTAAAATTCACAACATTTATAGCCGTGAATGTAAACGCGGTAACTTGAAGGCATGCAATCAAAAGACAAAATATAAGAATCCCAAAAAAGTTTATACGAACTCCATGGGAACATCCTTGACGGTAGACTTTGAACTTAAAAAATTGTTATTCAATGAATTTTCGATAAAAAAGTAAGCTTACACTGAAAATGCATACAACGCAAATAACGGGAAAAATGCACCGAATGCACCGAACATGCACCAACTGGCCGTGGAGAGCCAGCCTGGTTCATACTGCAATTTTTCAATTTTTTAACAATTTCTTAAAAGTTACCTACCGATTGAAACGGAACGATTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 336 164</canonical_bands>
                <polymorphic_bands>664 336</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAGCCGATCTAACTATTTTATT</pcr_primer_p1>
		<pcr_primer_p2>CGGCTATAAATGTTGTGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCAGCCGATCTAACTATTTTATTTGCCCGCGTACGCATACACTCTTAGGAATGTCGACGCGCTAGTGTATAAATTTGGAACCGATCGGTCAGCTCAGCCGACAGTCAGTCGGTTGGGTCGGCTGGGTCGGCGGTCGGTCTTTCGACCAAATTCGCCGACCAAATGGAACCCTAATTTGTCATTAGGACTCACACTTTGATTGACTACTGTAGTCATCCAGAATTTAAAATTCACAACATTTATAGCCG</canonical_amplicon>
		<polymorphic_amplicon>CCAGCCGATCTAACTATTTTATTTGCCCGCGTACGCATACACTCTTAGGAATGTCGACGCGSTAGTGTATAAATTTGGAACCGATCGGTCAGCTCAGCCGACAGTCAGTCGGTTGGGTCGGCTGGGTCGGCGGTCGGTCTTTCGACCAAATTCGCCGACCAAATGGAACCCTAATTTGTCATTAGGACTCACACTTTGATTGACTACTGTAGTCATCCAGAATTTAAAATTCACAACATTTATAGCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31143</snp_id>
        <super_contig>c005900641.Contig6</super_contig>
        <contig_pos>66988</contig_pos>
        <strand>+</strand>
        <context>GGGTCGGCTG[A/G]GTCGGCGGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGGAACCGATCGGTCAGCTCAGCCGACAGTCAGTCGGTTGGGTCGGCTG</left_flank>
        <right_flank>GTCGGCGGTCGGTCTTTCGACCAAATTCGCCGACCAAATGGAACCCTAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACCGAATAAAAGCATTAAAAAGAATGGAAAATATTTTTTCAGAATTCAAAAATATTTTCTTCAGATTTCTTTTTTTGCCGTCAGAAAAATAACAAATTCGTCAGCGTGGTCAGTCAAGCAGCGAGACGGCAACAAGGACGTTCGGTTTCACACATCATTAATTAATTTTATTTATTTCATAAAATAATTAATAAAGTTAATTACAATACCTTTTCGCTATATTCCCAGCCTGTGCAGTTGCCAAACATGCAATGACCGCAGAAATTATTGCTAGAAATGCAGAACTTCCCATCTGAAATTCGTCTTATTAAATTATATATTTTTATTAAGTCTTCCGTTTCGGTCGGTCGAAAATCGGTAACCGCAAACCGACCCAGCCGATCTAACTATTTTATTTGCCCGCGTACGCATACACTCTTAGGAATGTCGACGCGCTAGTGTATAAATTTGGAACCGATCGGTCAGCTCAGCCGACAGTCAGTCGGTTGGGTCGGCTGGGTCGGCGGTCGGTCTTTCGACCAAATTCGCCGACCAAATGGAACCCTAATTTGTCATTAGGACTCACACTTTGATTGACTACTGTAGTCATCCAGAATTTAAAATTCACAACATTTATAGCCGTGAATGTAAACGCGGTAACTTGAAGGCATGCAATCAAAAGACAAAATATAAGAATCCCAAAAAAGTTTATACGAACTCCATGGGAACATCCTTGACGGTAGACTTTGAACTTAAAAAATTGTTATTCAATGAATTTTCGATAAAAAAGTAAGCTTACACTGAAAATGCATACAACGCAAATAACGGGAAAAATGCACCGAATGCACCGAACATGCACCAACTGGCCGTGGAGAGCCAGCCTGGTTCATACTGCAATTTTTCAATTTTTTAACAATTTCTTAAAAGTTACCTACCGATTGAAACGGAACGATTCCAAAATGACCTTTGAACAATCCATTGTGCCAAACGATCCAATATTTGGTAAACGTTGAAATTGT</canonical>
            <polymorphic>CGACCGAATAAAAGCATTAAAAAGAATGGAAAATATTTTTTCAGAATTCAAAAATATTTTCTTCAGATTTCTTTTTTTGCCGTCAGAAAAATAACAAATTCGTCAGCGTGGTCAGTCAAGCAGCGAGACGGCAACAAGGACGTTCGGTTTCACACATCATTAATTAATTTTATTTATTTCATAAAATAATTAATAAAGTTAATTACAATACCTTTTCGCTATATTCCCAGCCTGTGCAGTTGCCAAACATGCAATGACCGCAGAAATTATTGCTAGAAATGCAGAACTTCCCATCTGAAATTCGTCTTATTAAATTATATATTTTTATTAAGTCTTCCGTTTCGGTCGGTCGAAAATCGGTAACCGCAAACCGACCCAGCCGATCTAACTATTTTATTTGCCCGCGTACGCATACACTCTTAGGAATGTCGACGCGCTAGTGTATAAATTTGGAACCGATCGGTCAGCTCAGCCGACAGTCAGTCGGTTGGGTCGGCTGRGTCGGCGGTCGGTCTTTCGACCAAATTCGCCGACCAAATGGAACCCTAATTTGTCATTAGGACTCACACTTTGATTGACTACTGTAGTCATCCAGAATTTAAAATTCACAACATTTATAGCCGTGAATGTAAACGCGGTAACTTGAAGGCATGCAATCAAAAGACAAAATATAAGAATCCCAAAAAAGTTTATACGAACTCCATGGGAACATCCTTGACGGTAGACTTTGAACTTAAAAAATTGTTATTCAATGAATTTTCGATAAAAAAGTAAGCTTACACTGAAAATGCATACAACGCAAATAACGGGAAAAATGCACCGAATGCACCGAACATGCACCAACTGGCCGTGGAGAGCCAGCCTGGTTCATACTGCAATTTTTCAATTTTTTAACAATTTCTTAAAAGTTACCTACCGATTGAAACGGAACGATTCCAAAATGACCTTTGAACAATCCATTGTGCCAAACGATCCAATATTTGGTAAACGTTGAAATTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGCCGATCTAACTATTTTATT</pcr_primer_p1>
		<pcr_primer_p2>CGGCTATAAATGTTGTGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCAGCCGATCTAACTATTTTATTTGCCCGCGTACGCATACACTCTTAGGAATGTCGACGCGCTAGTGTATAAATTTGGAACCGATCGGTCAGCTCAGCCGACAGTCAGTCGGTTGGGTCGGCTGGGTCGGCGGTCGGTCTTTCGACCAAATTCGCCGACCAAATGGAACCCTAATTTGTCATTAGGACTCACACTTTGATTGACTACTGTAGTCATCCAGAATTTAAAATTCACAACATTTATAGCCG</canonical_amplicon>
		<polymorphic_amplicon>CCAGCCGATCTAACTATTTTATTTGCCCGCGTACGCATACACTCTTAGGAATGTCGACGCGCTAGTGTATAAATTTGGAACCGATCGGTCAGCTCAGCCGACAGTCAGTCGGTTGGGTCGGCTGRGTCGGCGGTCGGTCTTTCGACCAAATTCGCCGACCAAATGGAACCCTAATTTGTCATTAGGACTCACACTTTGATTGACTACTGTAGTCATCCAGAATTTAAAATTCACAACATTTATAGCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31144</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>18928</contig_pos>
        <strand>+</strand>
        <context>TATGAAACGT[C/T]GTCAAACGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAGTGTGGTAGCATTTTGTCCTTGAAAACCATTTGGGTATGAAACGT</left_flank>
        <right_flank>GTCAAACGGATTGAAAATCATAGTTCCATTTGGGCAAACTGGGTCTGATA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGTTCGGAAGTTGTCGGATCAAGTTTTCGAATAGTTGGGTAGGACATTGTGGGGTCTGAAAATTATAAGTTGAGGAATAACTAAATTTTCAAATAGGAAAAAGAAAAAAATTACATTGATCCCAATAAATCTGAATTCCAAATTTGACTTTGAAATTTTCAGTGGACAACTTGACTTTTCCATGGGGTGCCAAGAAGAAAAACAGTTCGGCAGATGCAGCGAAGACCCTTTAATGACAATTTCCAATTAATTTTTTCATATAACTCACTTTTCAACATTCCCATTTTGATCAATCACTTGAACCGGAGCATGTAAAGTTTTCGATGAAAGGGACATTGTCGCCGTGGCGTACCATCCTATTGGGACATTGATCTGAAACTTTTTCTTCTAGTTTCCGTTATCCTAAAAATTTTGAAAAACCTGAAATTCACATTGAAAATTGTCTGGAAAAAGTGTGGTAGCATTTTGTCCTTGAAAACCATTTGGGTATGAAACGTCGTCAAACGGATTGAAAATCATAGTTCCATTTGGGCAAACTGGGTCTGATACTGTAGCAGAAGCGGCAATCAGTAGCAATAACACAATCATGTCTTCCAACACTTGAGTGTAGTTAGCTGGTGAACGATTTATAAAAAAGTGTTATCATTTTGATAAGCAAGGCACGTCATGAATTTCATTTTTGTAGGTTGACGAAGAAATGAATCATTTGTGTGTGCTAGACTCGCTAGGGAATGTGTGGTTCTGGTTGTTTGATTTTTTGAGTTTTGTGTTTTACGTACCGTATTTGCTCTAATGGAAGCCTGCATTTCGATCTCAATTATCTTAGTTCCTGTGAAAGATAACAAAAATATGTCAATTAATTAAATGTTTATCAAGATATCAGAAACATTTTGTCTGTTGATTACTTTTTGGTAGCTTTCACATGAACCGAGATAAACTGACTCAAAGAAGGAAGTTGGTTTGTTCCATTAAAGGTGGGGGACAGGAGATTTTTCGTA</canonical>
            <polymorphic>TTGGTTCGGAAGTTGTCGGATCAAGTTTTCGAATAGTTGGGTAGGACATTGTGGGGTCTGAAAATTATAAGTTGAGGAATAACTAAATTTTCAAATAGGAAAAAGAAAAAAATTACATTGATCCCAATAAATCTGAATTCCAAATTTGACTTTGAAATTTTCAGTGGACAACTTGACTTTTCCATGGGGTGCCAAGAAGAAAAACAGTTCGGCAGATGCAGCGAAGACCCTTTAATGACAATTTCCAATTAATTTTTTCATATAACTCACTTTTCAACATTCCCATTTTGATCAATCACTTGAACCGGAGCATGTAAAGTTTTCGATGAAAGGGACATTGTCGCCGTGGCGTACCATCCTATTGGGACATTGATCTGAAACTTTTTCTTCTAGTTTCCGTTATCCTAAAAATTTTGAAAAACCTGAAATTCACATTGAAAATTGTCTGGAAAAAGTGTGGTAGCATTTTGTCCTTGAAAACCATTTGGGTATGAAACGTYGTCAAACGGATTGAAAATCATAGTTCCATTTGGGCAAACTGGGTCTGATACTGTAGCAGAAGCGGCAATCAGTAGCAATAACACAATCATGTCTTCCAACACTTGAGTGTAGTTAGCTGGTGAACGATTTATAAAAAAGTGTTATCATTTTGATAAGCAAGGCACGTCATGAATTTCATTTTTGTAGGTTGACGAAGAAATGAATCATTTGTGTGTGCTAGACTCGCTAGGGAATGTGTGGTTCTGGTTGTTTGATTTTTTGAGTTTTGTGTTTTACGTACCGTATTTGCTCTAATGGAAGCCTGCATTTCGATCTCAATTATCTTAGTTCCTGTGAAAGATAACAAAAATATGTCAATTAATTAAATGTTTATCAAGATATCAGAAACATTTTGTCTGTTGATTACTTTTTGGTAGCTTTCACATGAACCGAGATAAACTGACTCAAAGAAGGAAGTTGGTTTGTTCCATTAAAGGTGGGGGACAGGAGATTTTTCGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTCTAGTTTCCGTTATCCT</pcr_primer_p1>
		<pcr_primer_p2>ATAAATCGTTCACCAGCTAACTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTCTAGTTTCCGTTATCCTAAAAATTTTGAAAAACCTGAAATTCACATTGAAAATTGTCTGGAAAAAGTGTGGTAGCATTTTGTCCTTGAAAACCATTTGGGTATGAAACGTCGTCAAACGGATTGAAAATCATAGTTCCATTTGGGCAAACTGGGTCTGATACTGTAGCAGAAGCGGCAATCAGTAGCAATAACACAATCATGTCTTCCAACACTTGAGTGTAGTTAGCTGGTGAACGATTTAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTCTAGTTTCCGTTATCCTAAAAATTTTGAAAAACCTGAAATTCACATTGAAAATTGTCTGGAAAAAGTGTGGTAGCATTTTGTCCTTGAAAACCATTTGGGTATGAAACGTYGTCAAACGGATTGAAAATCATAGTTCCATTTGGGCAAACTGGGTCTGATACTGTAGCAGAAGCGGCAATCAGTAGCAATAACACAATCATGTCTTCCAACACTTGAGTGTAGTTAGCTGGTGAACGATTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31145</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>18947</contig_pos>
        <strand>+</strand>
        <context>GATTGAAAAT[C/T]ATAGTTCCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTCCTTGAAAACCATTTGGGTATGAAACGTCGTCAAACGGATTGAAAAT</left_flank>
        <right_flank>ATAGTTCCATTTGGGCAAACTGGGTCTGATACTGTAGCAGAAGCGGCAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAAGTTTTCGAATAGTTGGGTAGGACATTGTGGGGTCTGAAAATTATAAGTTGAGGAATAACTAAATTTTCAAATAGGAAAAAGAAAAAAATTACATTGATCCCAATAAATCTGAATTCCAAATTTGACTTTGAAATTTTCAGTGGACAACTTGACTTTTCCATGGGGTGCCAAGAAGAAAAACAGTTCGGCAGATGCAGCGAAGACCCTTTAATGACAATTTCCAATTAATTTTTTCATATAACTCACTTTTCAACATTCCCATTTTGATCAATCACTTGAACCGGAGCATGTAAAGTTTTCGATGAAAGGGACATTGTCGCCGTGGCGTACCATCCTATTGGGACATTGATCTGAAACTTTTTCTTCTAGTTTCCGTTATCCTAAAAATTTTGAAAAACCTGAAATTCACATTGAAAATTGTCTGGAAAAAGTGTGGTAGCATTTTGTCCTTGAAAACCATTTGGGTATGAAACGTCGTCAAACGGATTGAAAATCATAGTTCCATTTGGGCAAACTGGGTCTGATACTGTAGCAGAAGCGGCAATCAGTAGCAATAACACAATCATGTCTTCCAACACTTGAGTGTAGTTAGCTGGTGAACGATTTATAAAAAAGTGTTATCATTTTGATAAGCAAGGCACGTCATGAATTTCATTTTTGTAGGTTGACGAAGAAATGAATCATTTGTGTGTGCTAGACTCGCTAGGGAATGTGTGGTTCTGGTTGTTTGATTTTTTGAGTTTTGTGTTTTACGTACCGTATTTGCTCTAATGGAAGCCTGCATTTCGATCTCAATTATCTTAGTTCCTGTGAAAGATAACAAAAATATGTCAATTAATTAAATGTTTATCAAGATATCAGAAACATTTTGTCTGTTGATTACTTTTTGGTAGCTTTCACATGAACCGAGATAAACTGACTCAAAGAAGGAAGTTGGTTTGTTCCATTAAAGGTGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGT</canonical>
            <polymorphic>ATCAAGTTTTCGAATAGTTGGGTAGGACATTGTGGGGTCTGAAAATTATAAGTTGAGGAATAACTAAATTTTCAAATAGGAAAAAGAAAAAAATTACATTGATCCCAATAAATCTGAATTCCAAATTTGACTTTGAAATTTTCAGTGGACAACTTGACTTTTCCATGGGGTGCCAAGAAGAAAAACAGTTCGGCAGATGCAGCGAAGACCCTTTAATGACAATTTCCAATTAATTTTTTCATATAACTCACTTTTCAACATTCCCATTTTGATCAATCACTTGAACCGGAGCATGTAAAGTTTTCGATGAAAGGGACATTGTCGCCGTGGCGTACCATCCTATTGGGACATTGATCTGAAACTTTTTCTTCTAGTTTCCGTTATCCTAAAAATTTTGAAAAACCTGAAATTCACATTGAAAATTGTCTGGAAAAAGTGTGGTAGCATTTTGTCCTTGAAAACCATTTGGGTATGAAACGTCGTCAAACGGATTGAAAATYATAGTTCCATTTGGGCAAACTGGGTCTGATACTGTAGCAGAAGCGGCAATCAGTAGCAATAACACAATCATGTCTTCCAACACTTGAGTGTAGTTAGCTGGTGAACGATTTATAAAAAAGTGTTATCATTTTGATAAGCAAGGCACGTCATGAATTTCATTTTTGTAGGTTGACGAAGAAATGAATCATTTGTGTGTGCTAGACTCGCTAGGGAATGTGTGGTTCTGGTTGTTTGATTTTTTGAGTTTTGTGTTTTACGTACCGTATTTGCTCTAATGGAAGCCTGCATTTCGATCTCAATTATCTTAGTTCCTGTGAAAGATAACAAAAATATGTCAATTAATTAAATGTTTATCAAGATATCAGAAACATTTTGTCTGTTGATTACTTTTTGGTAGCTTTCACATGAACCGAGATAAACTGACTCAAAGAAGGAAGTTGGTTTGTTCCATTAAAGGTGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTCTAGTTTCCGTTATCCT</pcr_primer_p1>
		<pcr_primer_p2>ATAAATCGTTCACCAGCTAACTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTCTAGTTTCCGTTATCCTAAAAATTTTGAAAAACCTGAAATTCACATTGAAAATTGTCTGGAAAAAGTGTGGTAGCATTTTGTCCTTGAAAACCATTTGGGTATGAAACGTCGTCAAACGGATTGAAAATCATAGTTCCATTTGGGCAAACTGGGTCTGATACTGTAGCAGAAGCGGCAATCAGTAGCAATAACACAATCATGTCTTCCAACACTTGAGTGTAGTTAGCTGGTGAACGATTTAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTCTAGTTTCCGTTATCCTAAAAATTTTGAAAAACCTGAAATTCACATTGAAAATTGTCTGGAAAAAGTGTGGTAGCATTTTGTCCTTGAAAACCATTTGGGTATGAAACGTCGTCAAACGGATTGAAAATYATAGTTCCATTTGGGCAAACTGGGTCTGATACTGTAGCAGAAGCGGCAATCAGTAGCAATAACACAATCATGTCTTCCAACACTTGAGTGTAGTTAGCTGGTGAACGATTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31146</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>19064</contig_pos>
        <strand>+</strand>
        <context>GATTTATAAA[A/G]AAGTGTTATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCATGTCTTCCAACACTTGAGTGTAGTTAGCTGGTGAACGATTTATAAA</left_flank>
        <right_flank>AAGTGTTATCATTTTGATAAGCAAGGCACGTCATGAATTTCATTTTTGTA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCCAAATTTGACTTTGAAATTTTCAGTGGACAACTTGACTTTTCCATGGGGTGCCAAGAAGAAAAACAGTTCGGCAGATGCAGCGAAGACCCTTTAATGACAATTTCCAATTAATTTTTTCATATAACTCACTTTTCAACATTCCCATTTTGATCAATCACTTGAACCGGAGCATGTAAAGTTTTCGATGAAAGGGACATTGTCGCCGTGGCGTACCATCCTATTGGGACATTGATCTGAAACTTTTTCTTCTAGTTTCCGTTATCCTAAAAATTTTGAAAAACCTGAAATTCACATTGAAAATTGTCTGGAAAAAGTGTGGTAGCATTTTGTCCTTGAAAACCATTTGGGTATGAAACGTCGTCAAACGGATTGAAAATCATAGTTCCATTTGGGCAAACTGGGTCTGATACTGTAGCAGAAGCGGCAATCAGTAGCAATAACACAATCATGTCTTCCAACACTTGAGTGTAGTTAGCTGGTGAACGATTTATAAAAAAGTGTTATCATTTTGATAAGCAAGGCACGTCATGAATTTCATTTTTGTAGGTTGACGAAGAAATGAATCATTTGTGTGTGCTAGACTCGCTAGGGAATGTGTGGTTCTGGTTGTTTGATTTTTTGAGTTTTGTGTTTTACGTACCGTATTTGCTCTAATGGAAGCCTGCATTTCGATCTCAATTATCTTAGTTCCTGTGAAAGATAACAAAAATATGTCAATTAATTAAATGTTTATCAAGATATCAGAAACATTTTGTCTGTTGATTACTTTTTGGTAGCTTTCACATGAACCGAGATAAACTGACTCAAAGAAGGAAGTTGGTTTGTTCCATTAAAGGTGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTAAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAAACGGACGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGG</canonical>
            <polymorphic>ATTCCAAATTTGACTTTGAAATTTTCAGTGGACAACTTGACTTTTCCATGGGGTGCCAAGAAGAAAAACAGTTCGGCAGATGCAGCGAAGACCCTTTAATGACAATTTCCAATTAATTTTTTCATATAACTCACTTTTCAACATTCCCATTTTGATCAATCACTTGAACCGGAGCATGTAAAGTTTTCGATGAAAGGGACATTGTCGCCGTGGCGTACCATCCTATTGGGACATTGATCTGAAACTTTTTCTTCTAGTTTCCGTTATCCTAAAAATTTTGAAAAACCTGAAATTCACATTGAAAATTGTCTGGAAAAAGTGTGGTAGCATTTTGTCCTTGAAAACCATTTGGGTATGAAACGTCGTCAAACGGATTGAAAATCATAGTTCCATTTGGGCAAACTGGGTCTGATACTGTAGCAGAAGCGGCAATCAGTAGCAATAACACAATCATGTCTTCCAACACTTGAGTGTAGTTAGCTGGTGAACGATTTATAAARAAGTGTTATCATTTTGATAAGCAAGGCACGTCATGAATTTCATTTTTGTAGGTTGACGAAGAAATGAATCATTTGTGTGTGCTAGACTCGCTAGGGAATGTGTGGTTCTGGTTGTTTGATTTTTTGAGTTTTGTGTTTTACGTACCGTATTTGCTCTAATGGAAGCCTGCATTTCGATCTCAATTATCTTAGTTCCTGTGAAAGATAACAAAAATATGTCAATTAATTAAATGTTTATCAAGATATCAGAAACATTTTGTCTGTTGATTACTTTTTGGTAGCTTTCACATGAACCGAGATAAACTGACTCAAAGAAGGAAGTTGGTTTGTTCCATTAAAGGTGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTAAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAAACGGACGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGCATTTTGTCCTTGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTCATTTCTTCGTCAACCTAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTAGCATTTTGTCCTTGAAAACCATTTGGGTATGAAACGTCGTCAAACGGATTGAAAATCATAGTTCCATTTGGGCAAACTGGGTCTGATACTGTAGCAGAAGCGGCAATCAGTAGCAATAACACAATCATGTCTTCCAACACTTGAGTGTAGTTAGCTGGTGAACGATTTATAAAAAAGTGTTATCATTTTGATAAGCAAGGCACGTCATGAATTTCATTTTTGTAGGTTGACGAAGAAATGAAT</canonical_amplicon>
		<polymorphic_amplicon>GTAGCATTTTGTCCTTGAAAACCATTTGGGTATGAAACGTCGTCAAACGGATTGAAAATCATAGTTCCATTTGGGCAAACTGGGTCTGATACTGTAGCAGAAGCGGCAATCAGTAGCAATAACACAATCATGTCTTCCAACACTTGAGTGTAGTTAGCTGGTGAACGATTTATAAARAAGTGTTATCATTTTGATAAGCAAGGCACGTCATGAATTTCATTTTTGTAGGTTGACGAAGAAATGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31147</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>19159</contig_pos>
        <strand>+</strand>
        <context>GACTCGCTAG[A/G]GAATGTGTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGTAGGTTGACGAAGAAATGAATCATTTGTGTGTGCTAGACTCGCTAG</left_flank>
        <right_flank>GAATGTGTGGTTCTGGTTGTTTGATTTTTTGAGTTTTGTGTTTTACGTAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAATGACAATTTCCAATTAATTTTTTCATATAACTCACTTTTCAACATTCCCATTTTGATCAATCACTTGAACCGGAGCATGTAAAGTTTTCGATGAAAGGGACATTGTCGCCGTGGCGTACCATCCTATTGGGACATTGATCTGAAACTTTTTCTTCTAGTTTCCGTTATCCTAAAAATTTTGAAAAACCTGAAATTCACATTGAAAATTGTCTGGAAAAAGTGTGGTAGCATTTTGTCCTTGAAAACCATTTGGGTATGAAACGTCGTCAAACGGATTGAAAATCATAGTTCCATTTGGGCAAACTGGGTCTGATACTGTAGCAGAAGCGGCAATCAGTAGCAATAACACAATCATGTCTTCCAACACTTGAGTGTAGTTAGCTGGTGAACGATTTATAAAAAAGTGTTATCATTTTGATAAGCAAGGCACGTCATGAATTTCATTTTTGTAGGTTGACGAAGAAATGAATCATTTGTGTGTGCTAGACTCGCTAGGGAATGTGTGGTTCTGGTTGTTTGATTTTTTGAGTTTTGTGTTTTACGTACCGTATTTGCTCTAATGGAAGCCTGCATTTCGATCTCAATTATCTTAGTTCCTGTGAAAGATAACAAAAATATGTCAATTAATTAAATGTTTATCAAGATATCAGAAACATTTTGTCTGTTGATTACTTTTTGGTAGCTTTCACATGAACCGAGATAAACTGACTCAAAGAAGGAAGTTGGTTTGTTCCATTAAAGGTGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTAAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAAACGGACGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCTTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTC</canonical>
            <polymorphic>TTAATGACAATTTCCAATTAATTTTTTCATATAACTCACTTTTCAACATTCCCATTTTGATCAATCACTTGAACCGGAGCATGTAAAGTTTTCGATGAAAGGGACATTGTCGCCGTGGCGTACCATCCTATTGGGACATTGATCTGAAACTTTTTCTTCTAGTTTCCGTTATCCTAAAAATTTTGAAAAACCTGAAATTCACATTGAAAATTGTCTGGAAAAAGTGTGGTAGCATTTTGTCCTTGAAAACCATTTGGGTATGAAACGTCGTCAAACGGATTGAAAATCATAGTTCCATTTGGGCAAACTGGGTCTGATACTGTAGCAGAAGCGGCAATCAGTAGCAATAACACAATCATGTCTTCCAACACTTGAGTGTAGTTAGCTGGTGAACGATTTATAAAAAAGTGTTATCATTTTGATAAGCAAGGCACGTCATGAATTTCATTTTTGTAGGTTGACGAAGAAATGAATCATTTGTGTGTGCTAGACTCGCTAGRGAATGTGTGGTTCTGGTTGTTTGATTTTTTGAGTTTTGTGTTTTACGTACCGTATTTGCTCTAATGGAAGCCTGCATTTCGATCTCAATTATCTTAGTTCCTGTGAAAGATAACAAAAATATGTCAATTAATTAAATGTTTATCAAGATATCAGAAACATTTTGTCTGTTGATTACTTTTTGGTAGCTTTCACATGAACCGAGATAAACTGACTCAAAGAAGGAAGTTGGTTTGTTCCATTAAAGGTGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTAAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAAACGGACGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCTTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAAACTGGGTCTGATACTG</pcr_primer_p1>
		<pcr_primer_p2>TACGGTACGTAAAACACAAAACT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCAAACTGGGTCTGATACTGTAGCAGAAGCGGCAATCAGTAGCAATAACACAATCATGTCTTCCAACACTTGAGTGTAGTTAGCTGGTGAACGATTTATAAAAAAGTGTTATCATTTTGATAAGCAAGGCACGTCATGAATTTCATTTTTGTAGGTTGACGAAGAAATGAATCATTTGTGTGTGCTAGACTCGCTAGGGAATGTGTGGTTCTGGTTGTTTGATTTTTTGAGTTTTGTGTTTTACGTACCGTA</canonical_amplicon>
		<polymorphic_amplicon>GCAAACTGGGTCTGATACTGTAGCAGAAGCGGCAATCAGTAGCAATAACACAATCATGTCTTCCAACACTTGAGTGTAGTTAGCTGGTGAACGATTTATAAAAAAGTGTTATCATTTTGATAAGCAAGGCACGTCATGAATTTCATTTTTGTAGGTTGACGAAGAAATGAATCATTTGTGTGTGCTAGACTCGCTAGRGAATGTGTGGTTCTGGTTGTTTGATTTTTTGAGTTTTGTGTTTTACGTACCGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31148</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>19239</contig_pos>
        <strand></strand>
        <context>GCCTGCattt[C/T]gakctcaatt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAGTTTTGTGTTTTACGTACCGTATTTGCTCTAATGGAAGCCTGCATTT</left_flank>
        <right_flank>GATCTCAATTATCTTAGTTCCTGTGAAAGATAACAAAAATATGTCAATTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTAAAGTTTTCGATGAAAGGGACATTGTCGCCGTGGCGTACCATCCTATTGGGACATTGATCTGAAACTTTTTCTTCTAGTTTCCGTTATCCTAAAAATTTTGAAAAACCTGAAATTCACATTGAAAATTGTCTGGAAAAAGTGTGGTAGCATTTTGTCCTTGAAAACCATTTGGGTATGAAACGTCGTCAAACGGATTGAAAATCATAGTTCCATTTGGGCAAACTGGGTCTGATACTGTAGCAGAAGCGGCAATCAGTAGCAATAACACAATCATGTCTTCCAACACTTGAGTGTAGTTAGCTGGTGAACGATTTATAAAAAAGTGTTATCATTTTGATAAGCAAGGCACGTCATGAATTTCATTTTTGTAGGTTGACGAAGAAATGAATCATTTGTGTGTGCTAGACTCGCTAGGGAATGTGTGGTTCTGGTTGTTTGATTTTTTGAGTTTTGTGTTTTACGTACCGTATTTGCTCTAATGGAAGCCTGCATTTCGATCTCAATTATCTTAGTTCCTGTGAAAGATAACAAAAATATGTCAATTAATTAAATGTTTATCAAGATATCAGAAACATTTTGTCTGTTGATTACTTTTTGGTAGCTTTCACATGAACCGAGATAAACTGACTCAAAGAAGGAAGTTGGTTTGTTCCATTAAAGGTGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTAAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAAACGGACGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCTTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCAGGCTTGGTCGGAATCGGAAAATCGAGTTCTCGATTTTTCCGATTTTCCGGTTTTTTTCGGAAAATTTTTCCGTCG</canonical>
            <polymorphic>ATGTAAAGTTTTCGATGAAAGGGACATTGTCGCCGTGGCGTACCATCCTATTGGGACATTGATCTGAAACTTTTTCTTCTAGTTTCCGTTATCCTAAAAATTTTGAAAAACCTGAAATTCACATTGAAAATTGTCTGGAAAAAGTGTGGTAGCATTTTGTCCTTGAAAACCATTTGGGTATGAAACGTCGTCAAACGGATTGAAAATCATAGTTCCATTTGGGCAAACTGGGTCTGATACTGTAGCAGAAGCGGCAATCAGTAGCAATAACACAATCATGTCTTCCAACACTTGAGTGTAGTTAGCTGGTGAACGATTTATAAAAAAGTGTTATCATTTTGATAAGCAAGGCACGTCATGAATTTCATTTTTGTAGGTTGACGAAGAAATGAATCATTTGTGTGTGCTAGACTCGCTAGGGAATGTGTGGTTCTGGTTGTTTGATTTTTTGAGTTTTGTGTTTTACGTACCGTATTTGCTCTAATGGAAGCCTGCATTTYGATCTCAATTATCTTAGTTCCTGTGAAAGATAACAAAAATATGTCAATTAATTAAATGTTTATCAAGATATCAGAAACATTTTGTCTGTTGATTACTTTTTGGTAGCTTTCACATGAACCGAGATAAACTGACTCAAAGAAGGAAGTTGGTTTGTTCCATTAAAGGTGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTAAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAAACGGACGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCTTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCAGGCTTGGTCGGAATCGGAAAATCGAGTTCTCGATTTTTCCGATTTTCCGGTTTTTTTCGGAAAATTTTTCCGTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>487 372 51 44 25 13 8</canonical_bands>
                <polymorphic_bands>859 51 44 25 13 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGAGTTTTGTGTTTTACG</pcr_primer_p1>
		<pcr_primer_p2>AAAAACTACGAAAAATCTCCTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGAGTTTTGTGTTTTACGTACCGTATTTGCTCTAATGGAAGCCTGCATTTCGATCTCAATTATCTTAGTTCCTGTGAAAGATAACAAAAATATGTCAATTAATTAAATGTTTATCAAGATATCAGAAACATTTTGTCTGTTGATTACTTTTTGGTAGCTTTCACATGAACCGAGATAAACTGACTCAAAGAAGGAAGTTGGTTTGTTCCATTAAAGGTGGGGGACAGGAGATTTTTCGTAGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGAGTTTTGTGTTTTACGTACCGTATTTGCTCTAATGGAAGCCTGCATTTYGATCTCAATTATCTTAGTTCCTGTGAAAGATAACAAAAATATGTCAATTAATTAAATGTTTATCAAGATATCAGAAACATTTTGTCTGTTGATTACTTTTTGGTAGCTTTCACATGAACCGAGATAAACTGACTCAAAGAAGGAAGTTGGTTTGTTCCATTAAAGGTGGGGGACAGGAGATTTTTCGTAGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31149</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>19242</contig_pos>
        <strand></strand>
        <context>TGCatttyga[T/G]ctcaattatc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GTTTTGTGTTTTACGTACCGTATTTGCTCTAATGGAAGCCTGCATTTCGA</left_flank>
        <right_flank>CTCAATTATCTTAGTTCCTGTGAAAGATAACAAAAATATGTCAATTAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAGTTTTCGATGAAAGGGACATTGTCGCCGTGGCGTACCATCCTATTGGGACATTGATCTGAAACTTTTTCTTCTAGTTTCCGTTATCCTAAAAATTTTGAAAAACCTGAAATTCACATTGAAAATTGTCTGGAAAAAGTGTGGTAGCATTTTGTCCTTGAAAACCATTTGGGTATGAAACGTCGTCAAACGGATTGAAAATCATAGTTCCATTTGGGCAAACTGGGTCTGATACTGTAGCAGAAGCGGCAATCAGTAGCAATAACACAATCATGTCTTCCAACACTTGAGTGTAGTTAGCTGGTGAACGATTTATAAAAAAGTGTTATCATTTTGATAAGCAAGGCACGTCATGAATTTCATTTTTGTAGGTTGACGAAGAAATGAATCATTTGTGTGTGCTAGACTCGCTAGGGAATGTGTGGTTCTGGTTGTTTGATTTTTTGAGTTTTGTGTTTTACGTACCGTATTTGCTCTAATGGAAGCCTGCATTTCGATCTCAATTATCTTAGTTCCTGTGAAAGATAACAAAAATATGTCAATTAATTAAATGTTTATCAAGATATCAGAAACATTTTGTCTGTTGATTACTTTTTGGTAGCTTTCACATGAACCGAGATAAACTGACTCAAAGAAGGAAGTTGGTTTGTTCCATTAAAGGTGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTAAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAAACGGACGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCTTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCAGGCTTGGTCGGAATCGGAAAATCGAGTTCTCGATTTTTCCGATTTTCCGGTTTTTTTCGGAAAATTTTTCCGTCGGAA</canonical>
            <polymorphic>TAAAGTTTTCGATGAAAGGGACATTGTCGCCGTGGCGTACCATCCTATTGGGACATTGATCTGAAACTTTTTCTTCTAGTTTCCGTTATCCTAAAAATTTTGAAAAACCTGAAATTCACATTGAAAATTGTCTGGAAAAAGTGTGGTAGCATTTTGTCCTTGAAAACCATTTGGGTATGAAACGTCGTCAAACGGATTGAAAATCATAGTTCCATTTGGGCAAACTGGGTCTGATACTGTAGCAGAAGCGGCAATCAGTAGCAATAACACAATCATGTCTTCCAACACTTGAGTGTAGTTAGCTGGTGAACGATTTATAAAAAAGTGTTATCATTTTGATAAGCAAGGCACGTCATGAATTTCATTTTTGTAGGTTGACGAAGAAATGAATCATTTGTGTGTGCTAGACTCGCTAGGGAATGTGTGGTTCTGGTTGTTTGATTTTTTGAGTTTTGTGTTTTACGTACCGTATTTGCTCTAATGGAAGCCTGCATTTCGAKCTCAATTATCTTAGTTCCTGTGAAAGATAACAAAAATATGTCAATTAATTAAATGTTTATCAAGATATCAGAAACATTTTGTCTGTTGATTACTTTTTGGTAGCTTTCACATGAACCGAGATAAACTGACTCAAAGAAGGAAGTTGGTTTGTTCCATTAAAGGTGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTAAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAAACGGACGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCTTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCAGGCTTGGTCGGAATCGGAAAATCGAGTTCTCGATTTTTCCGATTTTCCGGTTTTTTTCGGAAAATTTTTCCGTCGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>503 440 57</canonical_bands>
                <polymorphic_bands>943 57</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGAGTTTTGTGTTTTACG</pcr_primer_p1>
		<pcr_primer_p2>AAAAACTACGAAAAATCTCCTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGAGTTTTGTGTTTTACGTACCGTATTTGCTCTAATGGAAGCCTGCATTTCGATCTCAATTATCTTAGTTCCTGTGAAAGATAACAAAAATATGTCAATTAATTAAATGTTTATCAAGATATCAGAAACATTTTGTCTGTTGATTACTTTTTGGTAGCTTTCACATGAACCGAGATAAACTGACTCAAAGAAGGAAGTTGGTTTGTTCCATTAAAGGTGGGGGACAGGAGATTTTTCGTAGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGAGTTTTGTGTTTTACGTACCGTATTTGCTCTAATGGAAGCCTGCATTTCGAKCTCAATTATCTTAGTTCCTGTGAAAGATAACAAAAATATGTCAATTAATTAAATGTTTATCAAGATATCAGAAACATTTTGTCTGTTGATTACTTTTTGGTAGCTTTCACATGAACCGAGATAAACTGACTCAAAGAAGGAAGTTGGTTTGTTCCATTAAAGGTGGGGGACAGGAGATTTTTCGTAGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31150</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>19290</contig_pos>
        <strand></strand>
        <context>atgtcaatta[A/C]ttaaatgttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATCTCAATTATCTTAGTTCCTGTGAAAGATAACAAAAATATGTCAATTA</left_flank>
        <right_flank>TTAAATGTTTATCAAGATATCAGAAACATTTTGTCTGTTGATTACTTTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGGACATTGATCTGAAACTTTTTCTTCTAGTTTCCGTTATCCTAAAAATTTTGAAAAACCTGAAATTCACATTGAAAATTGTCTGGAAAAAGTGTGGTAGCATTTTGTCCTTGAAAACCATTTGGGTATGAAACGTCGTCAAACGGATTGAAAATCATAGTTCCATTTGGGCAAACTGGGTCTGATACTGTAGCAGAAGCGGCAATCAGTAGCAATAACACAATCATGTCTTCCAACACTTGAGTGTAGTTAGCTGGTGAACGATTTATAAAAAAGTGTTATCATTTTGATAAGCAAGGCACGTCATGAATTTCATTTTTGTAGGTTGACGAAGAAATGAATCATTTGTGTGTGCTAGACTCGCTAGGGAATGTGTGGTTCTGGTTGTTTGATTTTTTGAGTTTTGTGTTTTACGTACCGTATTTGCTCTAATGGAAGCCTGCATTTCGATCTCAATTATCTTAGTTCCTGTGAAAGATAACAAAAATATGTCAATTAATTAAATGTTTATCAAGATATCAGAAACATTTTGTCTGTTGATTACTTTTTGGTAGCTTTCACATGAACCGAGATAAACTGACTCAAAGAAGGAAGTTGGTTTGTTCCATTAAAGGTGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTAAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAAACGGACGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCTTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCAGGCTTGGTCGGAATCGGAAAATCGAGTTCTCGATTTTTCCGATTTTCCGGTTTTTTTCGGAAAATTTTTCCGTCGGAAATTTTTTTCTCGAAATAATCATGCTGCGTTCAAAGTAAGAGGAAATCT</canonical>
            <polymorphic>TGGGACATTGATCTGAAACTTTTTCTTCTAGTTTCCGTTATCCTAAAAATTTTGAAAAACCTGAAATTCACATTGAAAATTGTCTGGAAAAAGTGTGGTAGCATTTTGTCCTTGAAAACCATTTGGGTATGAAACGTCGTCAAACGGATTGAAAATCATAGTTCCATTTGGGCAAACTGGGTCTGATACTGTAGCAGAAGCGGCAATCAGTAGCAATAACACAATCATGTCTTCCAACACTTGAGTGTAGTTAGCTGGTGAACGATTTATAAAAAAGTGTTATCATTTTGATAAGCAAGGCACGTCATGAATTTCATTTTTGTAGGTTGACGAAGAAATGAATCATTTGTGTGTGCTAGACTCGCTAGGGAATGTGTGGTTCTGGTTGTTTGATTTTTTGAGTTTTGTGTTTTACGTACCGTATTTGCTCTAATGGAAGCCTGCATTTCGATCTCAATTATCTTAGTTCCTGTGAAAGATAACAAAAATATGTCAATTAMTTAAATGTTTATCAAGATATCAGAAACATTTTGTCTGTTGATTACTTTTTGGTAGCTTTCACATGAACCGAGATAAACTGACTCAAAGAAGGAAGTTGGTTTGTTCCATTAAAGGTGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTAAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAAACGGACGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCTTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCAGGCTTGGTCGGAATCGGAAAATCGAGTTCTCGATTTTTCCGATTTTCCGGTTTTTTTCGGAAAATTTTTCCGTCGGAAATTTTTTTCTCGAAATAATCATGCTGCGTTCAAAGTAAGAGGAAATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>497 391 108 4</canonical_bands>
                <polymorphic_bands>501 391 108</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAATTAA</site>
                <isoschizomers>
                    <enzyme>PacI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>342 232 146 96 49 47 39 17 15 13 4</canonical_bands>
                <polymorphic_bands>346 232 146 96 49 47 39 17 15 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGAGTTTTGTGTTTTACG</pcr_primer_p1>
		<pcr_primer_p2>AAAAACTACGAAAAATCTCCTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGAGTTTTGTGTTTTACGTACCGTATTTGCTCTAATGGAAGCCTGCATTTCGATCTCAATTATCTTAGTTCCTGTGAAAGATAACAAAAATATGTCAATTAATTAAATGTTTATCAAGATATCAGAAACATTTTGTCTGTTGATTACTTTTTGGTAGCTTTCACATGAACCGAGATAAACTGACTCAAAGAAGGAAGTTGGTTTGTTCCATTAAAGGTGGGGGACAGGAGATTTTTCGTAGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGAGTTTTGTGTTTTACGTACCGTATTTGCTCTAATGGAAGCCTGCATTTCGATCTCAATTATCTTAGTTCCTGTGAAAGATAACAAAAATATGTCAATTAMTTAAATGTTTATCAAGATATCAGAAACATTTTGTCTGTTGATTACTTTTTGGTAGCTTTCACATGAACCGAGATAAACTGACTCAAAGAAGGAAGTTGGTTTGTTCCATTAAAGGTGGGGGACAGGAGATTTTTCGTAGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31151</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>19396</contig_pos>
        <strand></strand>
        <context>ttggtttgtt[C/T]cattaaaggt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTCACATGAACCGAGATAAACTGACTCAAAGAAGGAAGTTGGTTTGTT</left_flank>
        <right_flank>CATTAAAGGTGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCCTTGAAAACCATTTGGGTATGAAACGTCGTCAAACGGATTGAAAATCATAGTTCCATTTGGGCAAACTGGGTCTGATACTGTAGCAGAAGCGGCAATCAGTAGCAATAACACAATCATGTCTTCCAACACTTGAGTGTAGTTAGCTGGTGAACGATTTATAAAAAAGTGTTATCATTTTGATAAGCAAGGCACGTCATGAATTTCATTTTTGTAGGTTGACGAAGAAATGAATCATTTGTGTGTGCTAGACTCGCTAGGGAATGTGTGGTTCTGGTTGTTTGATTTTTTGAGTTTTGTGTTTTACGTACCGTATTTGCTCTAATGGAAGCCTGCATTTCGATCTCAATTATCTTAGTTCCTGTGAAAGATAACAAAAATATGTCAATTAATTAAATGTTTATCAAGATATCAGAAACATTTTGTCTGTTGATTACTTTTTGGTAGCTTTCACATGAACCGAGATAAACTGACTCAAAGAAGGAAGTTGGTTTGTTCCATTAAAGGTGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTAAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAAACGGACGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCTTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCAGGCTTGGTCGGAATCGGAAAATCGAGTTCTCGATTTTTCCGATTTTCCGGTTTTTTTCGGAAAATTTTTCCGTCGGAAATTTTTTTCTCGAAATAATCATGCTGCGTTCAAAGTAAGAGGAAATCTCTACTTTGTATAGTTGAAACGGGTGCAACAGTAACCCAAGCGCGGCGAGACCCGCAATCGGTGTCGATTTACGGGGTCGATTTAAGGTGAATTTTTTTAAAATTAA</canonical>
            <polymorphic>TGTCCTTGAAAACCATTTGGGTATGAAACGTCGTCAAACGGATTGAAAATCATAGTTCCATTTGGGCAAACTGGGTCTGATACTGTAGCAGAAGCGGCAATCAGTAGCAATAACACAATCATGTCTTCCAACACTTGAGTGTAGTTAGCTGGTGAACGATTTATAAAAAAGTGTTATCATTTTGATAAGCAAGGCACGTCATGAATTTCATTTTTGTAGGTTGACGAAGAAATGAATCATTTGTGTGTGCTAGACTCGCTAGGGAATGTGTGGTTCTGGTTGTTTGATTTTTTGAGTTTTGTGTTTTACGTACCGTATTTGCTCTAATGGAAGCCTGCATTTCGATCTCAATTATCTTAGTTCCTGTGAAAGATAACAAAAATATGTCAATTAATTAAATGTTTATCAAGATATCAGAAACATTTTGTCTGTTGATTACTTTTTGGTAGCTTTCACATGAACCGAGATAAACTGACTCAAAGAAGGAAGTTGGTTTGTTYCATTAAAGGTGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTAAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAAACGGACGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCTTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCAGGCTTGGTCGGAATCGGAAAATCGAGTTCTCGATTTTTCCGATTTTCCGGTTTTTTTCGGAAAATTTTTCCGTCGGAAATTTTTTTCTCGAAATAATCATGCTGCGTTCAAAGTAAGAGGAAATCTCTACTTTGTATAGTTGAAACGGGTGCAACAGTAACCCAAGCGCGGCGAGACCCGCAATCGGTGTCGATTTACGGGGTCGATTTAAGGTGAATTTTTTTAAAATTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTACCGTATTTGCTCTAATG</pcr_primer_p1>
		<pcr_primer_p2>GAATGCATACTCTAGCTACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CGTACCGTATTTGCTCTAATGGAAGCCTGCATTTCGATCTCAATTATCTTAGTTCCTGTGAAAGATAACAAAAATATGTCAATTAATTAAATGTTTATCAAGATATCAGAAACATTTTGTCTGTTGATTACTTTTTGGTAGCTTTCACATGAACCGAGATAAACTGACTCAAAGAAGGAAGTTGGTTTGTTCCATTAAAGGTGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTC</canonical_amplicon>
		<polymorphic_amplicon>CGTACCGTATTTGCTCTAATGGAAGCCTGCATTTCGATCTCAATTATCTTAGTTCCTGTGAAAGATAACAAAAATATGTCAATTAATTAAATGTTTATCAAGATATCAGAAACATTTTGTCTGTTGATTACTTTTTGGTAGCTTTCACATGAACCGAGATAAACTGACTCAAAGAAGGAAGTTGGTTTGTTYCATTAAAGGTGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31152</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>22538</contig_pos>
        <strand>+</strand>
        <context>CGTAGCTCAG[A/C]TKRTGGCGGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCTCAAATTTCCAAAGGTACGCAAGCACCGGATGCGACCGCGTAGCTCAG</left_flank>
        <right_flank>TTATGGCGGCGGAGCCCCCATAATATTTTGTACGCAAGTTCAATATCCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCTGGATATGTCAGCGTCTCTTTTTGTGTGTCTCTCTAGGTGAGCAGAGATTTAGCACTTCTCCAAGACCAAAGAGAGCACGAAAAGGGCAGATATTTGGATGTCAAATGAAAATAAGAATTACTGCAAATTTGAAATGAAACTCTGATTCAAAAAATCTCTTCATTAAACGACAAAATATTTCAAACGCGGAATCTGGAGGCTACTATTCGAATTTTAAAAAATCTACCTTCTCACTAGCTTCATCTCACCGGCTCGTACCATGAAACCTTTCTCAAATATGTAGAAGCCCCCCCCCCCACTATACGTGCACTTTGAGCTCAATTACCTCGGTTCCTAAGAGGACTATCAAAAAACTGTCAACTGATAAAATGTGAATGATATTATGATGAGCAATTTATCTGTTGAAAGTTTTTCAATACCTTTTGAAGGAACCGAGATGATGGAGCTCAAATTTCCAAAGGTACGCAAGCACCGGATGCGACCGCGTAGCTCAGATTATGGCGGCGGAGCCCCCATAATATTTTGTACGCAAGTTCAATATCCCAAGGAGCGTAAATGAGGGAAAATCTAGTTTGTTCATGTTGGAACGTGTGTGGAAAAAACTAAAATCAGTTTCAAAATTTTCAGCCATGAAGAGTAAGTATTTCCCTTCTGATCAAAAAATAAAGAACCCGATAGATTCAATGATCTCTCTTGAATCACTTTCATTGTTCAAATGATGACAATTTTTCAATAGTTTTGTGCTGCGGGGCAACTGTTACAACATCTGCGTATCCAATAGAAAAAGTAAAAAAGAACGAAATGTTTCGGGTTTTCCCACTTTTCGATCTCTCCTATCACAGTACAGTTTTTTATTATTAGAATCAACAAAACAAAAAAAAATTGTCATCATTTTTCAGGTATAAAAGAGGCTGCGAGAGTTTCAATGATAACCAAAAGACTCTTTGCCTCTAAAATGCCAGGAAGATTCGAAGGAAAAGTTGCTATTATTACTG</canonical>
            <polymorphic>CTTCTGGATATGTCAGCGTCTCTTTTTGTGTGTCTCTCTAGGTGAGCAGAGATTTAGCACTTCTCCAAGACCAAAGAGAGCACGAAAAGGGCAGATATTTGGATGTCAAATGAAAATAAGAATTACTGCAAATTTGAAATGAAACTCTGATTCAAAAAATCTCTTCATTAAACGACAAAATATTTCAAACGCGGAATCTGGAGGCTACTATTCGAATTTTAAAAAATCTACCTTCTCACTAGCTTCATCTCACCGGCTCGTACCATGAAACCTTTCTCAAATATGTAGAAGCCCCCCCCCCCACTATACGTGCACTTTGAGCTCAATTACCTCGGTTCCTAAGAGGACTATCAAAAAACTGTCAACTGATAAAATGTGAATGATATTATGATGAGCAATTTATCTGTTGAAAGTTTTTCAATACCTTTTGAAGGAACCGAGATGATGGAGCTCAAATTTCCAAAGGTACGCAAGCACCGGATGCGACCGCGTAGCTCAGMTTATGGCGGCGGAGCCCCCATAATATTTTGTACGCAAGTTCAATATCCCAAGGAGCGTAAATGAGGGAAAATCTAGTTTGTTCATGTTGGAACGTGTGTGGAAAAAACTAAAATCAGTTTCAAAATTTTCAGCCATGAAGAGTAAGTATTTCCCTTCTGATCAAAAAATAAAGAACCCGATAGATTCAATGATCTCTCTTGAATCACTTTCATTGTTCAAATGATGACAATTTTTCAATAGTTTTGTGCTGCGGGGCAACTGTTACAACATCTGCGTATCCAATAGAAAAAGTAAAAAAGAACGAAATGTTTCGGGTTTTCCCACTTTTCGATCTCTCCTATCACAGTACAGTTTTTTATTATTAGAATCAACAAAACAAAAAAAAATTGTCATCATTTTTCAGGTATAAAAGAGGCTGCGAGAGTTTCAATGATAACCAAAAGACTCTTTGCCTCTAAAATGCCAGGAAGATTCGAAGGAAAAGTTGCTATTATTACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>350 342 160 148</canonical_bands>
                <polymorphic_bands>510 342 148</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGAAACCTTTCTCAAATATGTA</pcr_primer_p1>
		<pcr_primer_p2>TCCTTGGGATATTGAACTTG</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>CATGAAACCTTTCTCAAATATGTAGAAGCCCCCCCCCCCACTATACGTGCACTTTGAGCTCAATTACCTCGGTTCCTAAGAGGACTATCAAAAAACTGTCAACTGATAAAATGTGAATGATATTATGATGAGCAATTTATCTGTTGAAAGTTTTTCAATACCTTTTGAAGGAACCGAGATGATGGAGCTCAAATTTCCAAAGGTACGCAAGCACCGGATGCGACCGCGTAGCTCAGATTATGGCGGCGGAGCCCCCATAATATTTTGTACGCAAGTTCAATATCCCAAGGA</canonical_amplicon>
		<polymorphic_amplicon>CATGAAACCTTTCTCAAATATGTAGAAGCCCCCCCCCCCACTATACGTGCACTTTGAGCTCAATTACCTCGGTTCCTAAGAGGACTATCAAAAAACTGTCAACTGATAAAATGTGAATGATATTATGATGAGCAATTTATCTGTTGAAAGTTTTTCAATACCTTTTGAAGGAACCGAGATGATGGAGCTCAAATTTCCAAAGGTACGCAAGCACCGGATGCGACCGCGTAGCTCAGMTTATGGCGGCGGAGCCCCCATAATATTTTGTACGCAAGTTCAATATCCCAAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31153</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>22540</contig_pos>
        <strand>+</strand>
        <context>TAGCTCAGMT[G/T]RTGGCGGCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCAAATTTCCAAAGGTACGCAAGCACCGGATGCGACCGCGTAGCTCAGAT</left_flank>
        <right_flank>ATGGCGGCGGAGCCCCCATAATATTTTGTACGCAAGTTCAATATCCCAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGGATATGTCAGCGTCTCTTTTTGTGTGTCTCTCTAGGTGAGCAGAGATTTAGCACTTCTCCAAGACCAAAGAGAGCACGAAAAGGGCAGATATTTGGATGTCAAATGAAAATAAGAATTACTGCAAATTTGAAATGAAACTCTGATTCAAAAAATCTCTTCATTAAACGACAAAATATTTCAAACGCGGAATCTGGAGGCTACTATTCGAATTTTAAAAAATCTACCTTCTCACTAGCTTCATCTCACCGGCTCGTACCATGAAACCTTTCTCAAATATGTAGAAGCCCCCCCCCCCACTATACGTGCACTTTGAGCTCAATTACCTCGGTTCCTAAGAGGACTATCAAAAAACTGTCAACTGATAAAATGTGAATGATATTATGATGAGCAATTTATCTGTTGAAAGTTTTTCAATACCTTTTGAAGGAACCGAGATGATGGAGCTCAAATTTCCAAAGGTACGCAAGCACCGGATGCGACCGCGTAGCTCAGATTATGGCGGCGGAGCCCCCATAATATTTTGTACGCAAGTTCAATATCCCAAGGAGCGTAAATGAGGGAAAATCTAGTTTGTTCATGTTGGAACGTGTGTGGAAAAAACTAAAATCAGTTTCAAAATTTTCAGCCATGAAGAGTAAGTATTTCCCTTCTGATCAAAAAATAAAGAACCCGATAGATTCAATGATCTCTCTTGAATCACTTTCATTGTTCAAATGATGACAATTTTTCAATAGTTTTGTGCTGCGGGGCAACTGTTACAACATCTGCGTATCCAATAGAAAAAGTAAAAAAGAACGAAATGTTTCGGGTTTTCCCACTTTTCGATCTCTCCTATCACAGTACAGTTTTTTATTATTAGAATCAACAAAACAAAAAAAAATTGTCATCATTTTTCAGGTATAAAAGAGGCTGCGAGAGTTTCAATGATAACCAAAAGACTCTTTGCCTCTAAAATGCCAGGAAGATTCGAAGGAAAAGTTGCTATTATTACTGGA</canonical>
            <polymorphic>TCTGGATATGTCAGCGTCTCTTTTTGTGTGTCTCTCTAGGTGAGCAGAGATTTAGCACTTCTCCAAGACCAAAGAGAGCACGAAAAGGGCAGATATTTGGATGTCAAATGAAAATAAGAATTACTGCAAATTTGAAATGAAACTCTGATTCAAAAAATCTCTTCATTAAACGACAAAATATTTCAAACGCGGAATCTGGAGGCTACTATTCGAATTTTAAAAAATCTACCTTCTCACTAGCTTCATCTCACCGGCTCGTACCATGAAACCTTTCTCAAATATGTAGAAGCCCCCCCCCCCACTATACGTGCACTTTGAGCTCAATTACCTCGGTTCCTAAGAGGACTATCAAAAAACTGTCAACTGATAAAATGTGAATGATATTATGATGAGCAATTTATCTGTTGAAAGTTTTTCAATACCTTTTGAAGGAACCGAGATGATGGAGCTCAAATTTCCAAAGGTACGCAAGCACCGGATGCGACCGCGTAGCTCAGATKATGGCGGCGGAGCCCCCATAATATTTTGTACGCAAGTTCAATATCCCAAGGAGCGTAAATGAGGGAAAATCTAGTTTGTTCATGTTGGAACGTGTGTGGAAAAAACTAAAATCAGTTTCAAAATTTTCAGCCATGAAGAGTAAGTATTTCCCTTCTGATCAAAAAATAAAGAACCCGATAGATTCAATGATCTCTCTTGAATCACTTTCATTGTTCAAATGATGACAATTTTTCAATAGTTTTGTGCTGCGGGGCAACTGTTACAACATCTGCGTATCCAATAGAAAAAGTAAAAAAGAACGAAATGTTTCGGGTTTTCCCACTTTTCGATCTCTCCTATCACAGTACAGTTTTTTATTATTAGAATCAACAAAACAAAAAAAAATTGTCATCATTTTTCAGGTATAAAAGAGGCTGCGAGAGTTTCAATGATAACCAAAAGACTCTTTGCCTCTAAAATGCCAGGAAGATTCGAAGGAAAAGTTGCTATTATTACTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGAAACCTTTCTCAAATATGTA</pcr_primer_p1>
		<pcr_primer_p2>TCCTTGGGATATTGAACTTG</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>CATGAAACCTTTCTCAAATATGTAGAAGCCCCCCCCCCCACTATACGTGCACTTTGAGCTCAATTACCTCGGTTCCTAAGAGGACTATCAAAAAACTGTCAACTGATAAAATGTGAATGATATTATGATGAGCAATTTATCTGTTGAAAGTTTTTCAATACCTTTTGAAGGAACCGAGATGATGGAGCTCAAATTTCCAAAGGTACGCAAGCACCGGATGCGACCGCGTAGCTCAGATTATGGCGGCGGAGCCCCCATAATATTTTGTACGCAAGTTCAATATCCCAAGGA</canonical_amplicon>
		<polymorphic_amplicon>CATGAAACCTTTCTCAAATATGTAGAAGCCCCCCCCCCCACTATACGTGCACTTTGAGCTCAATTACCTCGGTTCCTAAGAGGACTATCAAAAAACTGTCAACTGATAAAATGTGAATGATATTATGATGAGCAATTTATCTGTTGAAAGTTTTTCAATACCTTTTGAAGGAACCGAGATGATGGAGCTCAAATTTCCAAAGGTACGCAAGCACCGGATGCGACCGCGTAGCTCAGATKATGGCGGCGGAGCCCCCATAATATTTTGTACGCAAGTTCAATATCCCAAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31154</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>22541</contig_pos>
        <strand>+</strand>
        <context>AGCTCAGMTK[A/G]TGGCGGCGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAATTTCCAAAGGTACGCAAGCACCGGATGCGACCGCGTAGCTCAGATT</left_flank>
        <right_flank>TGGCGGCGGAGCCCCCATAATATTTTGTACGCAAGTTCAATATCCCAAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGATATGTCAGCGTCTCTTTTTGTGTGTCTCTCTAGGTGAGCAGAGATTTAGCACTTCTCCAAGACCAAAGAGAGCACGAAAAGGGCAGATATTTGGATGTCAAATGAAAATAAGAATTACTGCAAATTTGAAATGAAACTCTGATTCAAAAAATCTCTTCATTAAACGACAAAATATTTCAAACGCGGAATCTGGAGGCTACTATTCGAATTTTAAAAAATCTACCTTCTCACTAGCTTCATCTCACCGGCTCGTACCATGAAACCTTTCTCAAATATGTAGAAGCCCCCCCCCCCACTATACGTGCACTTTGAGCTCAATTACCTCGGTTCCTAAGAGGACTATCAAAAAACTGTCAACTGATAAAATGTGAATGATATTATGATGAGCAATTTATCTGTTGAAAGTTTTTCAATACCTTTTGAAGGAACCGAGATGATGGAGCTCAAATTTCCAAAGGTACGCAAGCACCGGATGCGACCGCGTAGCTCAGATTATGGCGGCGGAGCCCCCATAATATTTTGTACGCAAGTTCAATATCCCAAGGAGCGTAAATGAGGGAAAATCTAGTTTGTTCATGTTGGAACGTGTGTGGAAAAAACTAAAATCAGTTTCAAAATTTTCAGCCATGAAGAGTAAGTATTTCCCTTCTGATCAAAAAATAAAGAACCCGATAGATTCAATGATCTCTCTTGAATCACTTTCATTGTTCAAATGATGACAATTTTTCAATAGTTTTGTGCTGCGGGGCAACTGTTACAACATCTGCGTATCCAATAGAAAAAGTAAAAAAGAACGAAATGTTTCGGGTTTTCCCACTTTTCGATCTCTCCTATCACAGTACAGTTTTTTATTATTAGAATCAACAAAACAAAAAAAAATTGTCATCATTTTTCAGGTATAAAAGAGGCTGCGAGAGTTTCAATGATAACCAAAAGACTCTTTGCCTCTAAAATGCCAGGAAGATTCGAAGGAAAAGTTGCTATTATTACTGGAT</canonical>
            <polymorphic>CTGGATATGTCAGCGTCTCTTTTTGTGTGTCTCTCTAGGTGAGCAGAGATTTAGCACTTCTCCAAGACCAAAGAGAGCACGAAAAGGGCAGATATTTGGATGTCAAATGAAAATAAGAATTACTGCAAATTTGAAATGAAACTCTGATTCAAAAAATCTCTTCATTAAACGACAAAATATTTCAAACGCGGAATCTGGAGGCTACTATTCGAATTTTAAAAAATCTACCTTCTCACTAGCTTCATCTCACCGGCTCGTACCATGAAACCTTTCTCAAATATGTAGAAGCCCCCCCCCCCACTATACGTGCACTTTGAGCTCAATTACCTCGGTTCCTAAGAGGACTATCAAAAAACTGTCAACTGATAAAATGTGAATGATATTATGATGAGCAATTTATCTGTTGAAAGTTTTTCAATACCTTTTGAAGGAACCGAGATGATGGAGCTCAAATTTCCAAAGGTACGCAAGCACCGGATGCGACCGCGTAGCTCAGATTRTGGCGGCGGAGCCCCCATAATATTTTGTACGCAAGTTCAATATCCCAAGGAGCGTAAATGAGGGAAAATCTAGTTTGTTCATGTTGGAACGTGTGTGGAAAAAACTAAAATCAGTTTCAAAATTTTCAGCCATGAAGAGTAAGTATTTCCCTTCTGATCAAAAAATAAAGAACCCGATAGATTCAATGATCTCTCTTGAATCACTTTCATTGTTCAAATGATGACAATTTTTCAATAGTTTTGTGCTGCGGGGCAACTGTTACAACATCTGCGTATCCAATAGAAAAAGTAAAAAAGAACGAAATGTTTCGGGTTTTCCCACTTTTCGATCTCTCCTATCACAGTACAGTTTTTTATTATTAGAATCAACAAAACAAAAAAAAATTGTCATCATTTTTCAGGTATAAAAGAGGCTGCGAGAGTTTCAATGATAACCAAAAGACTCTTTGCCTCTAAAATGCCAGGAAGATTCGAAGGAAAAGTTGCTATTATTACTGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGAAACCTTTCTCAAATATGTA</pcr_primer_p1>
		<pcr_primer_p2>TCCTTGGGATATTGAACTTG</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>CATGAAACCTTTCTCAAATATGTAGAAGCCCCCCCCCCCACTATACGTGCACTTTGAGCTCAATTACCTCGGTTCCTAAGAGGACTATCAAAAAACTGTCAACTGATAAAATGTGAATGATATTATGATGAGCAATTTATCTGTTGAAAGTTTTTCAATACCTTTTGAAGGAACCGAGATGATGGAGCTCAAATTTCCAAAGGTACGCAAGCACCGGATGCGACCGCGTAGCTCAGATTATGGCGGCGGAGCCCCCATAATATTTTGTACGCAAGTTCAATATCCCAAGGA</canonical_amplicon>
		<polymorphic_amplicon>CATGAAACCTTTCTCAAATATGTAGAAGCCCCCCCCCCCACTATACGTGCACTTTGAGCTCAATTACCTCGGTTCCTAAGAGGACTATCAAAAAACTGTCAACTGATAAAATGTGAATGATATTATGATGAGCAATTTATCTGTTGAAAGTTTTTCAATACCTTTTGAAGGAACCGAGATGATGGAGCTCAAATTTCCAAAGGTACGCAAGCACCGGATGCGACCGCGTAGCTCAGATTRTGGCGGCGGAGCCCCCATAATATTTTGTACGCAAGTTCAATATCCCAAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31155</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>22595</contig_pos>
        <strand>+</strand>
        <context>CCCAAGGAGC[G/T]TAAAKGAGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGGCGGAGCCCCCATAATATTTTGTACGCAAGTTCAATATCCCAAGGAGC</left_flank>
        <right_flank>TAAATGAGGGAAAATCTAGTTTGTTCATGTTGGAACGTGTGTGGAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTTCTCCAAGACCAAAGAGAGCACGAAAAGGGCAGATATTTGGATGTCAAATGAAAATAAGAATTACTGCAAATTTGAAATGAAACTCTGATTCAAAAAATCTCTTCATTAAACGACAAAATATTTCAAACGCGGAATCTGGAGGCTACTATTCGAATTTTAAAAAATCTACCTTCTCACTAGCTTCATCTCACCGGCTCGTACCATGAAACCTTTCTCAAATATGTAGAAGCCCCCCCCCCCACTATACGTGCACTTTGAGCTCAATTACCTCGGTTCCTAAGAGGACTATCAAAAAACTGTCAACTGATAAAATGTGAATGATATTATGATGAGCAATTTATCTGTTGAAAGTTTTTCAATACCTTTTGAAGGAACCGAGATGATGGAGCTCAAATTTCCAAAGGTACGCAAGCACCGGATGCGACCGCGTAGCTCAGATTATGGCGGCGGAGCCCCCATAATATTTTGTACGCAAGTTCAATATCCCAAGGAGCGTAAATGAGGGAAAATCTAGTTTGTTCATGTTGGAACGTGTGTGGAAAAAACTAAAATCAGTTTCAAAATTTTCAGCCATGAAGAGTAAGTATTTCCCTTCTGATCAAAAAATAAAGAACCCGATAGATTCAATGATCTCTCTTGAATCACTTTCATTGTTCAAATGATGACAATTTTTCAATAGTTTTGTGCTGCGGGGCAACTGTTACAACATCTGCGTATCCAATAGAAAAAGTAAAAAAGAACGAAATGTTTCGGGTTTTCCCACTTTTCGATCTCTCCTATCACAGTACAGTTTTTTATTATTAGAATCAACAAAACAAAAAAAAATTGTCATCATTTTTCAGGTATAAAAGAGGCTGCGAGAGTTTCAATGATAACCAAAAGACTCTTTGCCTCTAAAATGCCAGGAAGATTCGAAGGAAAAGTTGCTATTATTACTGGATCTTCAAATGGAATCGGAAGAGAGACTGCTCTTTTATTCGCTAAAGAAGGTGCTC</canonical>
            <polymorphic>CACTTCTCCAAGACCAAAGAGAGCACGAAAAGGGCAGATATTTGGATGTCAAATGAAAATAAGAATTACTGCAAATTTGAAATGAAACTCTGATTCAAAAAATCTCTTCATTAAACGACAAAATATTTCAAACGCGGAATCTGGAGGCTACTATTCGAATTTTAAAAAATCTACCTTCTCACTAGCTTCATCTCACCGGCTCGTACCATGAAACCTTTCTCAAATATGTAGAAGCCCCCCCCCCCACTATACGTGCACTTTGAGCTCAATTACCTCGGTTCCTAAGAGGACTATCAAAAAACTGTCAACTGATAAAATGTGAATGATATTATGATGAGCAATTTATCTGTTGAAAGTTTTTCAATACCTTTTGAAGGAACCGAGATGATGGAGCTCAAATTTCCAAAGGTACGCAAGCACCGGATGCGACCGCGTAGCTCAGATTATGGCGGCGGAGCCCCCATAATATTTTGTACGCAAGTTCAATATCCCAAGGAGCKTAAATGAGGGAAAATCTAGTTTGTTCATGTTGGAACGTGTGTGGAAAAAACTAAAATCAGTTTCAAAATTTTCAGCCATGAAGAGTAAGTATTTCCCTTCTGATCAAAAAATAAAGAACCCGATAGATTCAATGATCTCTCTTGAATCACTTTCATTGTTCAAATGATGACAATTTTTCAATAGTTTTGTGCTGCGGGGCAACTGTTACAACATCTGCGTATCCAATAGAAAAAGTAAAAAAGAACGAAATGTTTCGGGTTTTCCCACTTTTCGATCTCTCCTATCACAGTACAGTTTTTTATTATTAGAATCAACAAAACAAAAAAAAATTGTCATCATTTTTCAGGTATAAAAGAGGCTGCGAGAGTTTCAATGATAACCAAAAGACTCTTTGCCTCTAAAATGCCAGGAAGATTCGAAGGAAAAGTTGCTATTATTACTGGATCTTCAAATGGAATCGGAAGAGAGACTGCTCTTTTATTCGCTAAAGAAGGTGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGAAACCTTTCTCAAATATGTA</pcr_primer_p1>
		<pcr_primer_p2>GGCTGAAAATTTTGAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>371</pcr_amplicon_size>
		<canonical_amplicon>CATGAAACCTTTCTCAAATATGTAGAAGCCCCCCCCCCCACTATACGTGCACTTTGAGCTCAATTACCTCGGTTCCTAAGAGGACTATCAAAAAACTGTCAACTGATAAAATGTGAATGATATTATGATGAGCAATTTATCTGTTGAAAGTTTTTCAATACCTTTTGAAGGAACCGAGATGATGGAGCTCAAATTTCCAAAGGTACGCAAGCACCGGATGCGACCGCGTAGCTCAGATTATGGCGGCGGAGCCCCCATAATATTTTGTACGCAAGTTCAATATCCCAAGGAGCGTAAATGAGGGAAAATCTAGTTTGTTCATGTTGGAACGTGTGTGGAAAAAACTAAAATCAGTTTCAAAATTTTCAGCC</canonical_amplicon>
		<polymorphic_amplicon>CATGAAACCTTTCTCAAATATGTAGAAGCCCCCCCCCCCACTATACGTGCACTTTGAGCTCAATTACCTCGGTTCCTAAGAGGACTATCAAAAAACTGTCAACTGATAAAATGTGAATGATATTATGATGAGCAATTTATCTGTTGAAAGTTTTTCAATACCTTTTGAAGGAACCGAGATGATGGAGCTCAAATTTCCAAAGGTACGCAAGCACCGGATGCGACCGCGTAGCTCAGATTATGGCGGCGGAGCCCCCATAATATTTTGTACGCAAGTTCAATATCCCAAGGAGCKTAAATGAGGGAAAATCTAGTTTGTTCATGTTGGAACGTGTGTGGAAAAAACTAAAATCAGTTTCAAAATTTTCAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31156</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>22600</contig_pos>
        <strand>+</strand>
        <context>GGAGCKTAAA[G/T]GAGGGAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAGCCCCCATAATATTTTGTACGCAAGTTCAATATCCCAAGGAGCGTAAA</left_flank>
        <right_flank>GAGGGAAAATCTAGTTTGTTCATGTTGGAACGTGTGTGGAAAAAACTAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCAAGACCAAAGAGAGCACGAAAAGGGCAGATATTTGGATGTCAAATGAAAATAAGAATTACTGCAAATTTGAAATGAAACTCTGATTCAAAAAATCTCTTCATTAAACGACAAAATATTTCAAACGCGGAATCTGGAGGCTACTATTCGAATTTTAAAAAATCTACCTTCTCACTAGCTTCATCTCACCGGCTCGTACCATGAAACCTTTCTCAAATATGTAGAAGCCCCCCCCCCCACTATACGTGCACTTTGAGCTCAATTACCTCGGTTCCTAAGAGGACTATCAAAAAACTGTCAACTGATAAAATGTGAATGATATTATGATGAGCAATTTATCTGTTGAAAGTTTTTCAATACCTTTTGAAGGAACCGAGATGATGGAGCTCAAATTTCCAAAGGTACGCAAGCACCGGATGCGACCGCGTAGCTCAGATTATGGCGGCGGAGCCCCCATAATATTTTGTACGCAAGTTCAATATCCCAAGGAGCGTAAATGAGGGAAAATCTAGTTTGTTCATGTTGGAACGTGTGTGGAAAAAACTAAAATCAGTTTCAAAATTTTCAGCCATGAAGAGTAAGTATTTCCCTTCTGATCAAAAAATAAAGAACCCGATAGATTCAATGATCTCTCTTGAATCACTTTCATTGTTCAAATGATGACAATTTTTCAATAGTTTTGTGCTGCGGGGCAACTGTTACAACATCTGCGTATCCAATAGAAAAAGTAAAAAAGAACGAAATGTTTCGGGTTTTCCCACTTTTCGATCTCTCCTATCACAGTACAGTTTTTTATTATTAGAATCAACAAAACAAAAAAAAATTGTCATCATTTTTCAGGTATAAAAGAGGCTGCGAGAGTTTCAATGATAACCAAAAGACTCTTTGCCTCTAAAATGCCAGGAAGATTCGAAGGAAAAGTTGCTATTATTACTGGATCTTCAAATGGAATCGGAAGAGAGACTGCTCTTTTATTCGCTAAAGAAGGTGCTCAGGTT</canonical>
            <polymorphic>CTCCAAGACCAAAGAGAGCACGAAAAGGGCAGATATTTGGATGTCAAATGAAAATAAGAATTACTGCAAATTTGAAATGAAACTCTGATTCAAAAAATCTCTTCATTAAACGACAAAATATTTCAAACGCGGAATCTGGAGGCTACTATTCGAATTTTAAAAAATCTACCTTCTCACTAGCTTCATCTCACCGGCTCGTACCATGAAACCTTTCTCAAATATGTAGAAGCCCCCCCCCCCACTATACGTGCACTTTGAGCTCAATTACCTCGGTTCCTAAGAGGACTATCAAAAAACTGTCAACTGATAAAATGTGAATGATATTATGATGAGCAATTTATCTGTTGAAAGTTTTTCAATACCTTTTGAAGGAACCGAGATGATGGAGCTCAAATTTCCAAAGGTACGCAAGCACCGGATGCGACCGCGTAGCTCAGATTATGGCGGCGGAGCCCCCATAATATTTTGTACGCAAGTTCAATATCCCAAGGAGCGTAAAKGAGGGAAAATCTAGTTTGTTCATGTTGGAACGTGTGTGGAAAAAACTAAAATCAGTTTCAAAATTTTCAGCCATGAAGAGTAAGTATTTCCCTTCTGATCAAAAAATAAAGAACCCGATAGATTCAATGATCTCTCTTGAATCACTTTCATTGTTCAAATGATGACAATTTTTCAATAGTTTTGTGCTGCGGGGCAACTGTTACAACATCTGCGTATCCAATAGAAAAAGTAAAAAAGAACGAAATGTTTCGGGTTTTCCCACTTTTCGATCTCTCCTATCACAGTACAGTTTTTTATTATTAGAATCAACAAAACAAAAAAAAATTGTCATCATTTTTCAGGTATAAAAGAGGCTGCGAGAGTTTCAATGATAACCAAAAGACTCTTTGCCTCTAAAATGCCAGGAAGATTCGAAGGAAAAGTTGCTATTATTACTGGATCTTCAAATGGAATCGGAAGAGAGACTGCTCTTTTATTCGCTAAAGAAGGTGCTCAGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGAAACCTTTCTCAAATATGTA</pcr_primer_p1>
		<pcr_primer_p2>GGCTGAAAATTTTGAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>371</pcr_amplicon_size>
		<canonical_amplicon>CATGAAACCTTTCTCAAATATGTAGAAGCCCCCCCCCCCACTATACGTGCACTTTGAGCTCAATTACCTCGGTTCCTAAGAGGACTATCAAAAAACTGTCAACTGATAAAATGTGAATGATATTATGATGAGCAATTTATCTGTTGAAAGTTTTTCAATACCTTTTGAAGGAACCGAGATGATGGAGCTCAAATTTCCAAAGGTACGCAAGCACCGGATGCGACCGCGTAGCTCAGATTATGGCGGCGGAGCCCCCATAATATTTTGTACGCAAGTTCAATATCCCAAGGAGCGTAAATGAGGGAAAATCTAGTTTGTTCATGTTGGAACGTGTGTGGAAAAAACTAAAATCAGTTTCAAAATTTTCAGCC</canonical_amplicon>
		<polymorphic_amplicon>CATGAAACCTTTCTCAAATATGTAGAAGCCCCCCCCCCCACTATACGTGCACTTTGAGCTCAATTACCTCGGTTCCTAAGAGGACTATCAAAAAACTGTCAACTGATAAAATGTGAATGATATTATGATGAGCAATTTATCTGTTGAAAGTTTTTCAATACCTTTTGAAGGAACCGAGATGATGGAGCTCAAATTTCCAAAGGTACGCAAGCACCGGATGCGACCGCGTAGCTCAGATTATGGCGGCGGAGCCCCCATAATATTTTGTACGCAAGTTCAATATCCCAAGGAGCGTAAAKGAGGGAAAATCTAGTTTGTTCATGTTGGAACGTGTGTGGAAAAAACTAAAATCAGTTTCAAAATTTTCAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31157</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>72956</contig_pos>
        <strand></strand>
        <context>ataagaatta[T/C]ccaaaattga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTA</left_flank>
        <right_flank>CCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACATTGATTAGTTTTTAAATTCCTAAAAATTTTTAAAACAAACTCTGAAAATTTTCCCGGTCCGGTAGAATGACTGAAATTGTAATGCAAACGCTTGGTGAATAATCAAAATAAGGGAACATGTATAAATCACATTTGAAGATTGGTGTGAAAATTTTGGAGTCAGAAAAAAAGAATTAGATGATTGAAACATACGTTTCAAAAAGTTTTGAAAAGCCAATAATGCCAGCTTGAACGAATGACAACGTTGGAAATATATGAATACAAAATAGACAGGAAAGACAAACGCAGATGCACGAACCACAGTAACTCTGAATTCAAATAAGGCTCGAAAAATTAGGGTGCAAAAATCTCACGTTCCGGAAAATTCAATGTCAAACGTTTCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCAC</canonical>
            <polymorphic>GACATTGATTAGTTTTTAAATTCCTAAAAATTTTTAAAACAAACTCTGAAAATTTTCCCGGTCCGGTAGAATGACTGAAATTGTAATGCAAACGCTTGGTGAATAATCAAAATAAGGGAACATGTATAAATCACATTTGAAGATTGGTGTGAAAATTTTGGAGTCAGAAAAAAAGAATTAGATGATTGAAACATACGTTTCAAAAAGTTTTGAAAAGCCAATAATGCCAGCTTGAACGAATGACAACGTTGGAAATATATGAATACAAAATAGACAGGAAAGACAAACGCAGATGCACGAACCACAGTAACTCTGAATTCAAATAAGGCTCGAAAAATTAGGGTGCAAAAATCTCACGTTCCGGAAAATTCAATGTCAAACGTTTCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTAYCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTACCAGAAAAGGAAATATTACAG</pcr_primer_p1>
		<pcr_primer_p2>ATATATCGAGCGTTATGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>766</pcr_amplicon_size>
		<canonical_amplicon>TCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTG</canonical_amplicon>
		<polymorphic_amplicon>TCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTAYCCAAAATTGACAGTATGCACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31158</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>73114</contig_pos>
        <strand></strand>
        <context>ctccggatga[C/T]gttacatatt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGA</left_flank>
        <right_flank>GTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAGTCAGAAAAAAAGAATTAGATGATTGAAACATACGTTTCAAAAAGTTTTGAAAAGCCAATAATGCCAGCTTGAACGAATGACAACGTTGGAAATATATGAATACAAAATAGACAGGAAAGACAAACGCAGATGCACGAACCACAGTAACTCTGAATTCAAATAAGGCTCGAAAAATTAGGGTGCAAAAATCTCACGTTCCGGAAAATTCAATGTCAAACGTTTCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATATTTGATAGA</canonical>
            <polymorphic>TGGAGTCAGAAAAAAAGAATTAGATGATTGAAACATACGTTTCAAAAAGTTTTGAAAAGCCAATAATGCCAGCTTGAACGAATGACAACGTTGGAAATATATGAATACAAAATAGACAGGAAAGACAAACGCAGATGCACGAACCACAGTAACTCTGAATTCAAATAAGGCTCGAAAAATTAGGGTGCAAAAATCTCACGTTCCGGAAAATTCAATGTCAAACGTTTCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGAYGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATATTTGATAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>277 263 238 110 51 37 24</canonical_bands>
                <polymorphic_bands>515 263 110 51 37 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTACCAGAAAAGGAAATATTACAG</pcr_primer_p1>
		<pcr_primer_p2>ATATATCGAGCGTTATGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>766</pcr_amplicon_size>
		<canonical_amplicon>TCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATAT</canonical_amplicon>
		<polymorphic_amplicon>TCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGAYGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31159</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>73126</contig_pos>
        <strand></strand>
        <context>ttacatattt[C/T]ytagcaacca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTT</left_flank>
        <right_flank>CTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGAATTAGATGATTGAAACATACGTTTCAAAAAGTTTTGAAAAGCCAATAATGCCAGCTTGAACGAATGACAACGTTGGAAATATATGAATACAAAATAGACAGGAAAGACAAACGCAGATGCACGAACCACAGTAACTCTGAATTCAAATAAGGCTCGAAAAATTAGGGTGCAAAAATCTCACGTTCCGGAAAATTCAATGTCAAACGTTTCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATATTTGATAGATAATTGGATATA</canonical>
            <polymorphic>AAAAGAATTAGATGATTGAAACATACGTTTCAAAAAGTTTTGAAAAGCCAATAATGCCAGCTTGAACGAATGACAACGTTGGAAATATATGAATACAAAATAGACAGGAAAGACAAACGCAGATGCACGAACCACAGTAACTCTGAATTCAAATAAGGCTCGAAAAATTAGGGTGCAAAAATCTCACGTTCCGGAAAATTCAATGTCAAACGTTTCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTYCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATATTTGATAGATAATTGGATATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTACCAGAAAAGGAAATATTACAG</pcr_primer_p1>
		<pcr_primer_p2>ATATATCGAGCGTTATGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>766</pcr_amplicon_size>
		<canonical_amplicon>TCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATAT</canonical_amplicon>
		<polymorphic_amplicon>TCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTYCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31160</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>73127</contig_pos>
        <strand></strand>
        <context>tacatattty[C/T]tagcaaccaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTC</left_flank>
        <right_flank>TAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGAATTAGATGATTGAAACATACGTTTCAAAAAGTTTTGAAAAGCCAATAATGCCAGCTTGAACGAATGACAACGTTGGAAATATATGAATACAAAATAGACAGGAAAGACAAACGCAGATGCACGAACCACAGTAACTCTGAATTCAAATAAGGCTCGAAAAATTAGGGTGCAAAAATCTCACGTTCCGGAAAATTCAATGTCAAACGTTTCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATATTTGATAGATAATTGGATATAA</canonical>
            <polymorphic>AAAGAATTAGATGATTGAAACATACGTTTCAAAAAGTTTTGAAAAGCCAATAATGCCAGCTTGAACGAATGACAACGTTGGAAATATATGAATACAAAATAGACAGGAAAGACAAACGCAGATGCACGAACCACAGTAACTCTGAATTCAAATAAGGCTCGAAAAATTAGGGTGCAAAAATCTCACGTTCCGGAAAATTCAATGTCAAACGTTTCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCYTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATATTTGATAGATAATTGGATATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 426 74</canonical_bands>
                <polymorphic_bands>574 426</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTACCAGAAAAGGAAATATTACAG</pcr_primer_p1>
		<pcr_primer_p2>ATATATCGAGCGTTATGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>766</pcr_amplicon_size>
		<canonical_amplicon>TCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATAT</canonical_amplicon>
		<polymorphic_amplicon>TCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCYTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31161</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>73187</contig_pos>
        <strand></strand>
        <context>gaaaaaccgt[C/T]yagataaagt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGT</left_flank>
        <right_flank>CAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAACGAATGACAACGTTGGAAATATATGAATACAAAATAGACAGGAAAGACAAACGCAGATGCACGAACCACAGTAACTCTGAATTCAAATAAGGCTCGAAAAATTAGGGTGCAAAAATCTCACGTTCCGGAAAATTCAATGTCAAACGTTTCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATATTTGATAGATAATTGGATATAATGGATGAAAAAACAATAAAAATCTGAATAATAACTAATTCCAAAAATAGCACCCTCACTG</canonical>
            <polymorphic>TTGAACGAATGACAACGTTGGAAATATATGAATACAAAATAGACAGGAAAGACAAACGCAGATGCACGAACCACAGTAACTCTGAATTCAAATAAGGCTCGAAAAATTAGGGTGCAAAAATCTCACGTTCCGGAAAATTCAATGTCAAACGTTTCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTYCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATATTTGATAGATAATTGGATATAATGGATGAAAAAACAATAAAAATCTGAATAATAACTAATTCCAAAAATAGCACCCTCACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>182 176 147 130 122 113 81 49</canonical_bands>
                <polymorphic_bands>203 182 176 147 130 113 49</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTACCAGAAAAGGAAATATTACAG</pcr_primer_p1>
		<pcr_primer_p2>ATATATCGAGCGTTATGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>766</pcr_amplicon_size>
		<canonical_amplicon>TCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATAT</canonical_amplicon>
		<polymorphic_amplicon>TCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTYCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31162</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>73188</contig_pos>
        <strand></strand>
        <context>aaaaaccgty[C/T]agataaagtg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTC</left_flank>
        <right_flank>AGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAACGAATGACAACGTTGGAAATATATGAATACAAAATAGACAGGAAAGACAAACGCAGATGCACGAACCACAGTAACTCTGAATTCAAATAAGGCTCGAAAAATTAGGGTGCAAAAATCTCACGTTCCGGAAAATTCAATGTCAAACGTTTCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATATTTGATAGATAATTGGATATAATGGATGAAAAAACAATAAAAATCTGAATAATAACTAATTCCAAAAATAGCACCCTCACTGC</canonical>
            <polymorphic>TGAACGAATGACAACGTTGGAAATATATGAATACAAAATAGACAGGAAAGACAAACGCAGATGCACGAACCACAGTAACTCTGAATTCAAATAAGGCTCGAAAAATTAGGGTGCAAAAATCTCACGTTCCGGAAAATTCAATGTCAAACGTTTCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCYAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATATTTGATAGATAATTGGATATAATGGATGAAAAAACAATAAAAATCTGAATAATAACTAATTCCAAAAATAGCACCCTCACTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTACCAGAAAAGGAAATATTACAG</pcr_primer_p1>
		<pcr_primer_p2>ATATATCGAGCGTTATGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>766</pcr_amplicon_size>
		<canonical_amplicon>TCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATAT</canonical_amplicon>
		<polymorphic_amplicon>TCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCYAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31163</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>73208</contig_pos>
        <strand></strand>
        <context>ggtctaggtc[T/A]tactcaactt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTC</left_flank>
        <right_flank>TACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATATATGAATACAAAATAGACAGGAAAGACAAACGCAGATGCACGAACCACAGTAACTCTGAATTCAAATAAGGCTCGAAAAATTAGGGTGCAAAAATCTCACGTTCCGGAAAATTCAATGTCAAACGTTTCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATATTTGATAGATAATTGGATATAATGGATGAAAAAACAATAAAAATCTGAATAATAACTAATTCCAAAAATAGCACCCTCACTGCTTTATGATTTTCCCGATTCG</canonical>
            <polymorphic>AAATATATGAATACAAAATAGACAGGAAAGACAAACGCAGATGCACGAACCACAGTAACTCTGAATTCAAATAAGGCTCGAAAAATTAGGGTGCAAAAATCTCACGTTCCGGAAAATTCAATGTCAAACGTTTCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCWTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATATTTGATAGATAATTGGATATAATGGATGAAAAAACAATAAAAATCTGAATAATAACTAATTCCAAAAATAGCACCCTCACTGCTTTATGATTTTCCCGATTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTACCAGAAAAGGAAATATTACAG</pcr_primer_p1>
		<pcr_primer_p2>ATATATCGAGCGTTATGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>766</pcr_amplicon_size>
		<canonical_amplicon>TCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATAT</canonical_amplicon>
		<polymorphic_amplicon>TCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCWTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31164</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>73227</contig_pos>
        <strand></strand>
        <context>ttcccgtgga[A/G]cataggatct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGA</left_flank>
        <right_flank>CATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACAGGAAAGACAAACGCAGATGCACGAACCACAGTAACTCTGAATTCAAATAAGGCTCGAAAAATTAGGGTGCAAAAATCTCACGTTCCGGAAAATTCAATGTCAAACGTTTCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATATTTGATAGATAATTGGATATAATGGATGAAAAAACAATAAAAATCTGAATAATAACTAATTCCAAAAATAGCACCCTCACTGCTTTATGATTTTCCCGATTCGAGCGATAAACTTGTACAAA</canonical>
            <polymorphic>AGACAGGAAAGACAAACGCAGATGCACGAACCACAGTAACTCTGAATTCAAATAAGGCTCGAAAAATTAGGGTGCAAAAATCTCACGTTCCGGAAAATTCAATGTCAAACGTTTCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGARCATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATATTTGATAGATAATTGGATATAATGGATGAAAAAACAATAAAAATCTGAATAATAACTAATTCCAAAAATAGCACCCTCACTGCTTTATGATTTTCCCGATTCGAGCGATAAACTTGTACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTACCAGAAAAGGAAATATTACAG</pcr_primer_p1>
		<pcr_primer_p2>ATATATCGAGCGTTATGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>766</pcr_amplicon_size>
		<canonical_amplicon>TCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATAT</canonical_amplicon>
		<polymorphic_amplicon>TCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGARCATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31165</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>73252</contig_pos>
        <strand></strand>
        <context>ttatttaagc[A/T]aakgyaattc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGC</left_flank>
        <right_flank>AAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGAACCACAGTAACTCTGAATTCAAATAAGGCTCGAAAAATTAGGGTGCAAAAATCTCACGTTCCGGAAAATTCAATGTCAAACGTTTCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATATTTGATAGATAATTGGATATAATGGATGAAAAAACAATAAAAATCTGAATAATAACTAATTCCAAAAATAGCACCCTCACTGCTTTATGATTTTCCCGATTCGAGCGATAAACTTGTACAAAAATTGGGAAGATGCAATATAGAAAA</canonical>
            <polymorphic>ACGAACCACAGTAACTCTGAATTCAAATAAGGCTCGAAAAATTAGGGTGCAAAAATCTCACGTTCCGGAAAATTCAATGTCAAACGTTTCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCWAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATATTTGATAGATAATTGGATATAATGGATGAAAAAACAATAAAAATCTGAATAATAACTAATTCCAAAAATAGCACCCTCACTGCTTTATGATTTTCCCGATTCGAGCGATAAACTTGTACAAAAATTGGGAAGATGCAATATAGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTACCAGAAAAGGAAATATTACAG</pcr_primer_p1>
		<pcr_primer_p2>ATATATCGAGCGTTATGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>766</pcr_amplicon_size>
		<canonical_amplicon>TCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATAT</canonical_amplicon>
		<polymorphic_amplicon>TCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCWAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31166</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>73255</contig_pos>
        <strand></strand>
        <context>tttaagcwaa[G/T]gyaattcagt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAA</left_flank>
        <right_flank>GTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCACAGTAACTCTGAATTCAAATAAGGCTCGAAAAATTAGGGTGCAAAAATCTCACGTTCCGGAAAATTCAATGTCAAACGTTTCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATATTTGATAGATAATTGGATATAATGGATGAAAAAACAATAAAAATCTGAATAATAACTAATTCCAAAAATAGCACCCTCACTGCTTTATGATTTTCCCGATTCGAGCGATAAACTTGTACAAAAATTGGGAAGATGCAATATAGAAAAGCA</canonical>
            <polymorphic>AACCACAGTAACTCTGAATTCAAATAAGGCTCGAAAAATTAGGGTGCAAAAATCTCACGTTCCGGAAAATTCAATGTCAAACGTTTCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAKGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATATTTGATAGATAATTGGATATAATGGATGAAAAAACAATAAAAATCTGAATAATAACTAATTCCAAAAATAGCACCCTCACTGCTTTATGATTTTCCCGATTCGAGCGATAAACTTGTACAAAAATTGGGAAGATGCAATATAGAAAAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTACCAGAAAAGGAAATATTACAG</pcr_primer_p1>
		<pcr_primer_p2>ATATATCGAGCGTTATGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>766</pcr_amplicon_size>
		<canonical_amplicon>TCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATAT</canonical_amplicon>
		<polymorphic_amplicon>TCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAKGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31167</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>73257</contig_pos>
        <strand></strand>
        <context>taagcwaakg[T/C]aattcagtcy</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGG</left_flank>
        <right_flank>AATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAAC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACAGTAACTCTGAATTCAAATAAGGCTCGAAAAATTAGGGTGCAAAAATCTCACGTTCCGGAAAATTCAATGTCAAACGTTTCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATATTTGATAGATAATTGGATATAATGGATGAAAAAACAATAAAAATCTGAATAATAACTAATTCCAAAAATAGCACCCTCACTGCTTTATGATTTTCCCGATTCGAGCGATAAACTTGTACAAAAATTGGGAAGATGCAATATAGAAAAGCAAT</canonical>
            <polymorphic>CCACAGTAACTCTGAATTCAAATAAGGCTCGAAAAATTAGGGTGCAAAAATCTCACGTTCCGGAAAATTCAATGTCAAACGTTTCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGYAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATATTTGATAGATAATTGGATATAATGGATGAAAAAACAATAAAAATCTGAATAATAACTAATTCCAAAAATAGCACCCTCACTGCTTTATGATTTTCCCGATTCGAGCGATAAACTTGTACAAAAATTGGGAAGATGCAATATAGAAAAGCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTACCAGAAAAGGAAATATTACAG</pcr_primer_p1>
		<pcr_primer_p2>ATATATCGAGCGTTATGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>766</pcr_amplicon_size>
		<canonical_amplicon>TCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATAT</canonical_amplicon>
		<polymorphic_amplicon>TCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGYAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31168</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>73267</contig_pos>
        <strand></strand>
        <context>yaattcagtc[T/C]taagccgctt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTC</left_flank>
        <right_flank>TAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGAATTCAAATAAGGCTCGAAAAATTAGGGTGCAAAAATCTCACGTTCCGGAAAATTCAATGTCAAACGTTTCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATATTTGATAGATAATTGGATATAATGGATGAAAAAACAATAAAAATCTGAATAATAACTAATTCCAAAAATAGCACCCTCACTGCTTTATGATTTTCCCGATTCGAGCGATAAACTTGTACAAAAATTGGGAAGATGCAATATAGAAAAGCAATGATTAAACCC</canonical>
            <polymorphic>TCTGAATTCAAATAAGGCTCGAAAAATTAGGGTGCAAAAATCTCACGTTCCGGAAAATTCAATGTCAAACGTTTCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCYTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATATTTGATAGATAATTGGATATAATGGATGAAAAAACAATAAAAATCTGAATAATAACTAATTCCAAAAATAGCACCCTCACTGCTTTATGATTTTCCCGATTCGAGCGATAAACTTGTACAAAAATTGGGAAGATGCAATATAGAAAAGCAATGATTAAACCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTTAAG</site>
                <isoschizomers>
                    <enzyme>AflII</enzyme>
                    <enzyme>BfrI</enzyme>
                    <enzyme>BspTI</enzyme>
                    <enzyme>Bst98I</enzyme>
                    <enzyme>MspCI</enzyme>
                    <enzyme>Vha464I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>244 214 167 157 155 35 21 7</canonical_bands>
                <polymorphic_bands>244 214 167 157 155 56 7</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTACCAGAAAAGGAAATATTACAG</pcr_primer_p1>
		<pcr_primer_p2>ATATATCGAGCGTTATGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>766</pcr_amplicon_size>
		<canonical_amplicon>TCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATAT</canonical_amplicon>
		<polymorphic_amplicon>TCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCYTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31169</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>73279</contig_pos>
        <strand></strand>
        <context>aagccgcttt[G/T]awtgaacggc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTT</left_flank>
        <right_flank>AATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGGCTCGAAAAATTAGGGTGCAAAAATCTCACGTTCCGGAAAATTCAATGTCAAACGTTTCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATATTTGATAGATAATTGGATATAATGGATGAAAAAACAATAAAAATCTGAATAATAACTAATTCCAAAAATAGCACCCTCACTGCTTTATGATTTTCCCGATTCGAGCGATAAACTTGTACAAAAATTGGGAAGATGCAATATAGAAAAGCAATGATTAAACCCCCAAAAACTAGT</canonical>
            <polymorphic>TAAGGCTCGAAAAATTAGGGTGCAAAAATCTCACGTTCCGGAAAATTCAATGTCAAACGTTTCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTKAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATATTTGATAGATAATTGGATATAATGGATGAAAAAACAATAAAAATCTGAATAATAACTAATTCCAAAAATAGCACCCTCACTGCTTTATGATTTTCCCGATTCGAGCGATAAACTTGTACAAAAATTGGGAAGATGCAATATAGAAAAGCAATGATTAAACCCCCAAAAACTAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTACCAGAAAAGGAAATATTACAG</pcr_primer_p1>
		<pcr_primer_p2>ATATATCGAGCGTTATGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>766</pcr_amplicon_size>
		<canonical_amplicon>TCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATAT</canonical_amplicon>
		<polymorphic_amplicon>TCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTKAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31170</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>73281</contig_pos>
        <strand></strand>
        <context>gccgctttka[A/T]tgaacggctc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGA</left_flank>
        <right_flank>TGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGCTCGAAAAATTAGGGTGCAAAAATCTCACGTTCCGGAAAATTCAATGTCAAACGTTTCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATATTTGATAGATAATTGGATATAATGGATGAAAAAACAATAAAAATCTGAATAATAACTAATTCCAAAAATAGCACCCTCACTGCTTTATGATTTTCCCGATTCGAGCGATAAACTTGTACAAAAATTGGGAAGATGCAATATAGAAAAGCAATGATTAAACCCCCAAAAACTAGTCC</canonical>
            <polymorphic>AGGCTCGAAAAATTAGGGTGCAAAAATCTCACGTTCCGGAAAATTCAATGTCAAACGTTTCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAWTGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATATTTGATAGATAATTGGATATAATGGATGAAAAAACAATAAAAATCTGAATAATAACTAATTCCAAAAATAGCACCCTCACTGCTTTATGATTTTCCCGATTCGAGCGATAAACTTGTACAAAAATTGGGAAGATGCAATATAGAAAAGCAATGATTAAACCCCCAAAAACTAGTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTACCAGAAAAGGAAATATTACAG</pcr_primer_p1>
		<pcr_primer_p2>ATATATCGAGCGTTATGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>766</pcr_amplicon_size>
		<canonical_amplicon>TCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAATGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATAT</canonical_amplicon>
		<polymorphic_amplicon>TCTACCAGAAAAGGAAATATTACAGTTATATATTAGGTTGGAAGGAAAGGTTGGAAAGAAAGTAAAATGTAACTGTCCATTTTTTAATTCGTGAATAACACAAAAATAAGAATTATCCAAAATTGACAGTATGCACTGTTGTGGTTCGTGCTGACAACATTCAGGTAACTTGTGGATACCAACCCTCCAAAAGCCAGTTGGCTGCGACTCAAAGAATTTTTTCAGTCCAAATTTTATCTTATTTACAGTGTTAAGTATTTTCCCTCCGGATGACGTTACATATTTCCTAGCAACCAATAATGAAAGGGCCAAATCAGTAGTTTGAGGGGGCGTAAAGAAAAACCGTCCAGATAAAGTGGTCTAGGTCTTACTCAACTTCCCGTGGAACATAGGATCTCGTCTTATTTAAGCAAAGGTAATTCAGTCTTAAGCCGCTTTGAWTGAACGGCTCTCCACATTCCTTAAACTCCAGACTTGGTTCTTTCATTATTCGTTATTCGGAGATATGCAACGTCATCTGGAGGGAAAATATCTTTGCACTATCGATGAGATAAAAACGGCACTTTAGGAATACTTTGACTCGCGGCCAGCTTGTTTTTGGAGGGATGGAATCCACAAGTTACCTGAGTGTTGACAGCATATCGTGGACCACGACGGTGCATCCTGTCAATCTTGGATAATTCTTATTTTTGTGTTATTCGCGAATTAAAAAATGGACAGTTACTTTCCTTCCAACCTTATAGAAAAACCATAACGCTCGATATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31171</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>114660</contig_pos>
        <strand></strand>
        <context>TTGATCAAAC[A/G]ATTTAGAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGATTCCATACTTAAAGAATTTTTTCTTGGAATCGTGAGTTTGATCAAAC</left_flank>
        <right_flank>ATTTAGAATACTCCAATGTTCGATTGATTCAAAAATTTTCAAGAGTAGCA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATGATGAGTATGACATATCGTGGTCATGAAAATTGTCAATAGAGCGGTAAAAAGAATACCATGCCTGAATTTTTTAACACTGTTCAACTTTATTTAAAAAACTAACATTTTCTTATTCCAGAGAGGAGGTCCTTCGGTAAATAAATCAATAACGAAAATGGCAAAAAATAAATAAAACCAACAAATTGCTTTGAAGAAATGATTAGTTATTGGATAGATGGAAGTCTGAAATTTATCAGATTTTCGAAATTTTGAATTTTAAAAAAGTGTTTTTACTTCTTTGTCCCATTCTCGGTTTTTAATTCTTATAAAGACAAATATAGGAAATAAGAAAATCAAAAGTATAAATAGGACCGAGACAATAACAATCGATAAAGTGGCTAAGGTGATAAAAATTAAAAACGACAAACTTAGATGTCTTGATGATTCTTCAATTTGTATAGTGGTAGATTCCATACTTAAAGAATTTTTTCTTGGAATCGTGAGTTTGATCAAACAATTTAGAATACTCCAATGTTCGATTGATTCAAAAATTTTCAAGAGTAGCAGACTGAAATTTTATTAAATTTTCGAAAAATCGTAAGAATTATATTTTGGTTTGAAAACATGACAACCGCTTTGTTAAATATTGGGTTGTTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGCGGAGCAGCTGTTGTGACTTCTTCCAATGACGGCTCCACAGTAGACTTTTTGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTTGTTAC</canonical>
            <polymorphic>ATATGATGAGTATGACATATCGTGGTCATGAAAATTGTCAATAGAGCGGTAAAAAGAATACCATGCCTGAATTTTTTAACACTGTTCAACTTTATTTAAAAAACTAACATTTTCTTATTCCAGAGAGGAGGTCCTTCGGTAAATAAATCAATAACGAAAATGGCAAAAAATAAATAAAACCAACAAATTGCTTTGAAGAAATGATTAGTTATTGGATAGATGGAAGTCTGAAATTTATCAGATTTTCGAAATTTTGAATTTTAAAAAAGTGTTTTTACTTCTTTGTCCCATTCTCGGTTTTTAATTCTTATAAAGACAAATATAGGAAATAAGAAAATCAAAAGTATAAATAGGACCGAGACAATAACAATCGATAAAGTGGCTAAGGTGATAAAAATTAAAAACGACAAACTTAGATGTCTTGATGATTCTTCAATTTGTATAGTGGTAGATTCCATACTTAAAGAATTTTTTCTTGGAATCGTGAGTTTGATCAAACRATTTAGAATACTCCAATGTTCGATTGATTCAAAAATTTTCAAGAGTAGCAGACTGAAATTTTATTAAATTTTCGAAAAATCGTAAGAATTATATTTTGGTTTGAAAACATGACAACCGCTTTGTTAAATATTGGGTTGTTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGCGGAGCAGCTGTTGTGACTTCTTCCAATGACGGCTCCACAGTAGACTTTTTGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTTGTTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>171 116 97 93 82 46 46 39 37 34 34 33 32 32 26 23 20 18 10 7 4</canonical_bands>
                <polymorphic_bands>171 116 97 93 82 67 46 46 39 37 34 32 32 26 23 20 18 10 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAACAATCGATAAAGTGGCTAA</pcr_primer_p1>
		<pcr_primer_p2>GTCATGTTTTCAAACCAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAACAATCGATAAAGTGGCTAAGGTGATAAAAATTAAAAACGACAAACTTAGATGTCTTGATGATTCTTCAATTTGTATAGTGGTAGATTCCATACTTAAAGAATTTTTTCTTGGAATCGTGAGTTTGATCAAACAATTTAGAATACTCCAATGTTCGATTGATTCAAAAATTTTCAAGAGTAGCAGACTGAAATTTTATTAAATTTTCGAAAAATCGTAAGAATTATATTTTGGTTTGAAAACATGAC</canonical_amplicon>
		<polymorphic_amplicon>ATAACAATCGATAAAGTGGCTAAGGTGATAAAAATTAAAAACGACAAACTTAGATGTCTTGATGATTCTTCAATTTGTATAGTGGTAGATTCCATACTTAAAGAATTTTTTCTTGGAATCGTGAGTTTGATCAAACRATTTAGAATACTCCAATGTTCGATTGATTCAAAAATTTTCAAGAGTAGCAGACTGAAATTTTATTAAATTTTCGAAAAATCGTAAGAATTATATTTTGGTTTGAAAACATGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31172</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>114778</contig_pos>
        <strand></strand>
        <context>CATGACAACC[G/A]CTTTGTTAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTTTCGAAAAATCGTAAGAATTATATTTTGGTTTGAAAACATGACAACC</left_flank>
        <right_flank>CTTTGTTAAATATTGGGTTGTTTTATGTAAATGTCATGCTGAAAACTTCT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAGAGAGGAGGTCCTTCGGTAAATAAATCAATAACGAAAATGGCAAAAAATAAATAAAACCAACAAATTGCTTTGAAGAAATGATTAGTTATTGGATAGATGGAAGTCTGAAATTTATCAGATTTTCGAAATTTTGAATTTTAAAAAAGTGTTTTTACTTCTTTGTCCCATTCTCGGTTTTTAATTCTTATAAAGACAAATATAGGAAATAAGAAAATCAAAAGTATAAATAGGACCGAGACAATAACAATCGATAAAGTGGCTAAGGTGATAAAAATTAAAAACGACAAACTTAGATGTCTTGATGATTCTTCAATTTGTATAGTGGTAGATTCCATACTTAAAGAATTTTTTCTTGGAATCGTGAGTTTGATCAAACAATTTAGAATACTCCAATGTTCGATTGATTCAAAAATTTTCAAGAGTAGCAGACTGAAATTTTATTAAATTTTCGAAAAATCGTAAGAATTATATTTTGGTTTGAAAACATGACAACCGCTTTGTTAAATATTGGGTTGTTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGCGGAGCAGCTGTTGTGACTTCTTCCAATGACGGCTCCACAGTAGACTTTTTGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTTGTTACATAACAAATATGACAATTGAATAGTCGCTGGAGTGGAAAACAAATCAAGTACACAAAGAAAAGGAAAATTCTGTAAATGAAGATTTTAAAATTTGTGAGACTCCTGGAATATGTTTTT</canonical>
            <polymorphic>TCCAGAGAGGAGGTCCTTCGGTAAATAAATCAATAACGAAAATGGCAAAAAATAAATAAAACCAACAAATTGCTTTGAAGAAATGATTAGTTATTGGATAGATGGAAGTCTGAAATTTATCAGATTTTCGAAATTTTGAATTTTAAAAAAGTGTTTTTACTTCTTTGTCCCATTCTCGGTTTTTAATTCTTATAAAGACAAATATAGGAAATAAGAAAATCAAAAGTATAAATAGGACCGAGACAATAACAATCGATAAAGTGGCTAAGGTGATAAAAATTAAAAACGACAAACTTAGATGTCTTGATGATTCTTCAATTTGTATAGTGGTAGATTCCATACTTAAAGAATTTTTTCTTGGAATCGTGAGTTTGATCAAACAATTTAGAATACTCCAATGTTCGATTGATTCAAAAATTTTCAAGAGTAGCAGACTGAAATTTTATTAAATTTTCGAAAAATCGTAAGAATTATATTTTGGTTTGAAAACATGACAACCRCTTTGTTAAATATTGGGTTGTTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGCGGAGCAGCTGTTGTGACTTCTTCCAATGACGGCTCCACAGTAGACTTTTTGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTTGTTACATAACAAATATGACAATTGAATAGTCGCTGGAGTGGAAAACAAATCAAGTACACAAAGAAAAGGAAAATTCTGTAAATGAAGATTTTAAAATTTGTGAGACTCCTGGAATATGTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>498 264 238</canonical_bands>
                <polymorphic_bands>762 238</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTTGGAATCGTGAGT</pcr_primer_p1>
		<pcr_primer_p2>AGAAATATTTTCATAACCACAGC</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTTGGAATCGTGAGTTTGATCAAACAATTTAGAATACTCCAATGTTCGATTGATTCAAAAATTTTCAAGAGTAGCAGACTGAAATTTTATTAAATTTTCGAAAAATCGTAAGAATTATATTTTGGTTTGAAAACATGACAACCGCTTTGTTAAATATTGGGTTGTTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTGTGGTTATGAAAATATTTCT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTTGGAATCGTGAGTTTGATCAAACAATTTAGAATACTCCAATGTTCGATTGATTCAAAAATTTTCAAGAGTAGCAGACTGAAATTTTATTAAATTTTCGAAAAATCGTAAGAATTATATTTTGGTTTGAAAACATGACAACCRCTTTGTTAAATATTGGGTTGTTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTGTGGTTATGAAAATATTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31173</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>114793</contig_pos>
        <strand></strand>
        <context>GTTAAATATT[G/T]GGTTGTTTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAAGAATTATATTTTGGTTTGAAAACATGACAACCGCTTTGTTAAATATT</left_flank>
        <right_flank>GGTTGTTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCGGTAAATAAATCAATAACGAAAATGGCAAAAAATAAATAAAACCAACAAATTGCTTTGAAGAAATGATTAGTTATTGGATAGATGGAAGTCTGAAATTTATCAGATTTTCGAAATTTTGAATTTTAAAAAAGTGTTTTTACTTCTTTGTCCCATTCTCGGTTTTTAATTCTTATAAAGACAAATATAGGAAATAAGAAAATCAAAAGTATAAATAGGACCGAGACAATAACAATCGATAAAGTGGCTAAGGTGATAAAAATTAAAAACGACAAACTTAGATGTCTTGATGATTCTTCAATTTGTATAGTGGTAGATTCCATACTTAAAGAATTTTTTCTTGGAATCGTGAGTTTGATCAAACAATTTAGAATACTCCAATGTTCGATTGATTCAAAAATTTTCAAGAGTAGCAGACTGAAATTTTATTAAATTTTCGAAAAATCGTAAGAATTATATTTTGGTTTGAAAACATGACAACCGCTTTGTTAAATATTGGGTTGTTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGCGGAGCAGCTGTTGTGACTTCTTCCAATGACGGCTCCACAGTAGACTTTTTGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTTGTTACATAACAAATATGACAATTGAATAGTCGCTGGAGTGGAAAACAAATCAAGTACACAAAGAAAAGGAAAATTCTGTAAATGAAGATTTTAAAATTTGTGAGACTCCTGGAATATGTTTTTGAATAATTTTAAAAC</canonical>
            <polymorphic>CTTCGGTAAATAAATCAATAACGAAAATGGCAAAAAATAAATAAAACCAACAAATTGCTTTGAAGAAATGATTAGTTATTGGATAGATGGAAGTCTGAAATTTATCAGATTTTCGAAATTTTGAATTTTAAAAAAGTGTTTTTACTTCTTTGTCCCATTCTCGGTTTTTAATTCTTATAAAGACAAATATAGGAAATAAGAAAATCAAAAGTATAAATAGGACCGAGACAATAACAATCGATAAAGTGGCTAAGGTGATAAAAATTAAAAACGACAAACTTAGATGTCTTGATGATTCTTCAATTTGTATAGTGGTAGATTCCATACTTAAAGAATTTTTTCTTGGAATCGTGAGTTTGATCAAACAATTTAGAATACTCCAATGTTCGATTGATTCAAAAATTTTCAAGAGTAGCAGACTGAAATTTTATTAAATTTTCGAAAAATCGTAAGAATTATATTTTGGTTTGAAAACATGACAACCGCTTTGTTAAATATTKGGTTGTTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGCGGAGCAGCTGTTGTGACTTCTTCCAATGACGGCTCCACAGTAGACTTTTTGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTTGTTACATAACAAATATGACAATTGAATAGTCGCTGGAGTGGAAAACAAATCAAGTACACAAAGAAAAGGAAAATTCTGTAAATGAAGATTTTAAAATTTGTGAGACTCCTGGAATATGTTTTTGAATAATTTTAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGTAAGAATTATATTTTGGTTTG</pcr_primer_p1>
		<pcr_primer_p2>GTTAATCGATGCTATTTGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCGTAAGAATTATATTTTGGTTTGAAAACATGACAACCGCTTTGTTAAATATTGGGTTGTTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAAC</canonical_amplicon>
		<polymorphic_amplicon>TCGTAAGAATTATATTTTGGTTTGAAAACATGACAACCGCTTTGTTAAATATTKGGTTGTTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31174</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>114828</contig_pos>
        <strand></strand>
        <context>TGAAAACTTC[T/C]AATTAATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCTTTGTTAAATATTGGGTTGTTTTATGTAAATGTCATGCTGAAAACTTC</left_flank>
        <right_flank>AATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAAATAAAACCAACAAATTGCTTTGAAGAAATGATTAGTTATTGGATAGATGGAAGTCTGAAATTTATCAGATTTTCGAAATTTTGAATTTTAAAAAAGTGTTTTTACTTCTTTGTCCCATTCTCGGTTTTTAATTCTTATAAAGACAAATATAGGAAATAAGAAAATCAAAAGTATAAATAGGACCGAGACAATAACAATCGATAAAGTGGCTAAGGTGATAAAAATTAAAAACGACAAACTTAGATGTCTTGATGATTCTTCAATTTGTATAGTGGTAGATTCCATACTTAAAGAATTTTTTCTTGGAATCGTGAGTTTGATCAAACAATTTAGAATACTCCAATGTTCGATTGATTCAAAAATTTTCAAGAGTAGCAGACTGAAATTTTATTAAATTTTCGAAAAATCGTAAGAATTATATTTTGGTTTGAAAACATGACAACCGCTTTGTTAAATATTGGGTTGTTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGCGGAGCAGCTGTTGTGACTTCTTCCAATGACGGCTCCACAGTAGACTTTTTGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTTGTTACATAACAAATATGACAATTGAATAGTCGCTGGAGTGGAAAACAAATCAAGTACACAAAGAAAAGGAAAATTCTGTAAATGAAGATTTTAAAATTTGTGAGACTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGA</canonical>
            <polymorphic>AATAAATAAAACCAACAAATTGCTTTGAAGAAATGATTAGTTATTGGATAGATGGAAGTCTGAAATTTATCAGATTTTCGAAATTTTGAATTTTAAAAAAGTGTTTTTACTTCTTTGTCCCATTCTCGGTTTTTAATTCTTATAAAGACAAATATAGGAAATAAGAAAATCAAAAGTATAAATAGGACCGAGACAATAACAATCGATAAAGTGGCTAAGGTGATAAAAATTAAAAACGACAAACTTAGATGTCTTGATGATTCTTCAATTTGTATAGTGGTAGATTCCATACTTAAAGAATTTTTTCTTGGAATCGTGAGTTTGATCAAACAATTTAGAATACTCCAATGTTCGATTGATTCAAAAATTTTCAAGAGTAGCAGACTGAAATTTTATTAAATTTTCGAAAAATCGTAAGAATTATATTTTGGTTTGAAAACATGACAACCGCTTTGTTAAATATTGGGTTGTTTTATGTAAATGTCATGCTGAAAACTTCYAATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGCGGAGCAGCTGTTGTGACTTCTTCCAATGACGGCTCCACAGTAGACTTTTTGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTTGTTACATAACAAATATGACAATTGAATAGTCGCTGGAGTGGAAAACAAATCAAGTACACAAAGAAAAGGAAAATTCTGTAAATGAAGATTTTAAAATTTGTGAGACTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGTAAGAATTATATTTTGGTTTG</pcr_primer_p1>
		<pcr_primer_p2>GTTAATCGATGCTATTTGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCGTAAGAATTATATTTTGGTTTGAAAACATGACAACCGCTTTGTTAAATATTGGGTTGTTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAAC</canonical_amplicon>
		<polymorphic_amplicon>TCGTAAGAATTATATTTTGGTTTGAAAACATGACAACCGCTTTGTTAAATATTGGGTTGTTTTATGTAAATGTCATGCTGAAAACTTCYAATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31175</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>114902</contig_pos>
        <strand></strand>
        <context>AGAAGGTTTA[T/A]TGCTCAGCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTA</left_flank>
        <right_flank>TGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAAC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCGAAATTTTGAATTTTAAAAAAGTGTTTTTACTTCTTTGTCCCATTCTCGGTTTTTAATTCTTATAAAGACAAATATAGGAAATAAGAAAATCAAAAGTATAAATAGGACCGAGACAATAACAATCGATAAAGTGGCTAAGGTGATAAAAATTAAAAACGACAAACTTAGATGTCTTGATGATTCTTCAATTTGTATAGTGGTAGATTCCATACTTAAAGAATTTTTTCTTGGAATCGTGAGTTTGATCAAACAATTTAGAATACTCCAATGTTCGATTGATTCAAAAATTTTCAAGAGTAGCAGACTGAAATTTTATTAAATTTTCGAAAAATCGTAAGAATTATATTTTGGTTTGAAAACATGACAACCGCTTTGTTAAATATTGGGTTGTTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGCGGAGCAGCTGTTGTGACTTCTTCCAATGACGGCTCCACAGTAGACTTTTTGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTTGTTACATAACAAATATGACAATTGAATAGTCGCTGGAGTGGAAAACAAATCAAGTACACAAAGAAAAGGAAAATTCTGTAAATGAAGATTTTAAAATTTGTGAGACTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAAATAATTGTGCCTGAAACACAAGTTAATTTTATTTATACAAGGAAAACTCACTATTTTGA</canonical>
            <polymorphic>TTTTCGAAATTTTGAATTTTAAAAAAGTGTTTTTACTTCTTTGTCCCATTCTCGGTTTTTAATTCTTATAAAGACAAATATAGGAAATAAGAAAATCAAAAGTATAAATAGGACCGAGACAATAACAATCGATAAAGTGGCTAAGGTGATAAAAATTAAAAACGACAAACTTAGATGTCTTGATGATTCTTCAATTTGTATAGTGGTAGATTCCATACTTAAAGAATTTTTTCTTGGAATCGTGAGTTTGATCAAACAATTTAGAATACTCCAATGTTCGATTGATTCAAAAATTTTCAAGAGTAGCAGACTGAAATTTTATTAAATTTTCGAAAAATCGTAAGAATTATATTTTGGTTTGAAAACATGACAACCGCTTTGTTAAATATTGGGTTGTTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTAWTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGCGGAGCAGCTGTTGTGACTTCTTCCAATGACGGCTCCACAGTAGACTTTTTGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTTGTTACATAACAAATATGACAATTGAATAGTCGCTGGAGTGGAAAACAAATCAAGTACACAAAGAAAAGGAAAATTCTGTAAATGAAGATTTTAAAATTTGTGAGACTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAAATAATTGTGCCTGAAACACAAGTTAATTTTATTTATACAAGGAAAACTCACTATTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTATGTAAATGTCATGCTGAA</pcr_primer_p1>
		<pcr_primer_p2>GCCAACTTGAACTACCTATTTATT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTAWTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31176</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>114932</contig_pos>
        <strand></strand>
        <context>AAGTATTAAA[T/C]TGRCTATACT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAA</left_flank>
        <right_flank>TGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTACTTCTTTGTCCCATTCTCGGTTTTTAATTCTTATAAAGACAAATATAGGAAATAAGAAAATCAAAAGTATAAATAGGACCGAGACAATAACAATCGATAAAGTGGCTAAGGTGATAAAAATTAAAAACGACAAACTTAGATGTCTTGATGATTCTTCAATTTGTATAGTGGTAGATTCCATACTTAAAGAATTTTTTCTTGGAATCGTGAGTTTGATCAAACAATTTAGAATACTCCAATGTTCGATTGATTCAAAAATTTTCAAGAGTAGCAGACTGAAATTTTATTAAATTTTCGAAAAATCGTAAGAATTATATTTTGGTTTGAAAACATGACAACCGCTTTGTTAAATATTGGGTTGTTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGCGGAGCAGCTGTTGTGACTTCTTCCAATGACGGCTCCACAGTAGACTTTTTGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTTGTTACATAACAAATATGACAATTGAATAGTCGCTGGAGTGGAAAACAAATCAAGTACACAAAGAAAAGGAAAATTCTGTAAATGAAGATTTTAAAATTTGTGAGACTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAAATAATTGTGCCTGAAACACAAGTTAATTTTATTTATACAAGGAAAACTCACTATTTTGAAAGCAATAATAAGTGTAGTCTGATACATGA</canonical>
            <polymorphic>TTTTACTTCTTTGTCCCATTCTCGGTTTTTAATTCTTATAAAGACAAATATAGGAAATAAGAAAATCAAAAGTATAAATAGGACCGAGACAATAACAATCGATAAAGTGGCTAAGGTGATAAAAATTAAAAACGACAAACTTAGATGTCTTGATGATTCTTCAATTTGTATAGTGGTAGATTCCATACTTAAAGAATTTTTTCTTGGAATCGTGAGTTTGATCAAACAATTTAGAATACTCCAATGTTCGATTGATTCAAAAATTTTCAAGAGTAGCAGACTGAAATTTTATTAAATTTTCGAAAAATCGTAAGAATTATATTTTGGTTTGAAAACATGACAACCGCTTTGTTAAATATTGGGTTGTTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAAYTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGCGGAGCAGCTGTTGTGACTTCTTCCAATGACGGCTCCACAGTAGACTTTTTGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTTGTTACATAACAAATATGACAATTGAATAGTCGCTGGAGTGGAAAACAAATCAAGTACACAAAGAAAAGGAAAATTCTGTAAATGAAGATTTTAAAATTTGTGAGACTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAAATAATTGTGCCTGAAACACAAGTTAATTTTATTTATACAAGGAAAACTCACTATTTTGAAAGCAATAATAAGTGTAGTCTGATACATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>185 97 93 82 65 63 52 39 34 34 33 33 32 30 26 23 23 22 20 10 4</canonical_bands>
                <polymorphic_bands>185 131 93 82 65 63 52 39 34 33 33 32 30 26 23 23 22 20 10 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTATGTAAATGTCATGCTGAA</pcr_primer_p1>
		<pcr_primer_p2>GCCAACTTGAACTACCTATTTATT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAAYTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31177</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>114935</contig_pos>
        <strand></strand>
        <context>TATTAAAYTG[A/G]CTATACTCYT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTG</left_flank>
        <right_flank>CTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAAC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTTCTTTGTCCCATTCTCGGTTTTTAATTCTTATAAAGACAAATATAGGAAATAAGAAAATCAAAAGTATAAATAGGACCGAGACAATAACAATCGATAAAGTGGCTAAGGTGATAAAAATTAAAAACGACAAACTTAGATGTCTTGATGATTCTTCAATTTGTATAGTGGTAGATTCCATACTTAAAGAATTTTTTCTTGGAATCGTGAGTTTGATCAAACAATTTAGAATACTCCAATGTTCGATTGATTCAAAAATTTTCAAGAGTAGCAGACTGAAATTTTATTAAATTTTCGAAAAATCGTAAGAATTATATTTTGGTTTGAAAACATGACAACCGCTTTGTTAAATATTGGGTTGTTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGCGGAGCAGCTGTTGTGACTTCTTCCAATGACGGCTCCACAGTAGACTTTTTGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTTGTTACATAACAAATATGACAATTGAATAGTCGCTGGAGTGGAAAACAAATCAAGTACACAAAGAAAAGGAAAATTCTGTAAATGAAGATTTTAAAATTTGTGAGACTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAAATAATTGTGCCTGAAACACAAGTTAATTTTATTTATACAAGGAAAACTCACTATTTTGAAAGCAATAATAAGTGTAGTCTGATACATGATAT</canonical>
            <polymorphic>TACTTCTTTGTCCCATTCTCGGTTTTTAATTCTTATAAAGACAAATATAGGAAATAAGAAAATCAAAAGTATAAATAGGACCGAGACAATAACAATCGATAAAGTGGCTAAGGTGATAAAAATTAAAAACGACAAACTTAGATGTCTTGATGATTCTTCAATTTGTATAGTGGTAGATTCCATACTTAAAGAATTTTTTCTTGGAATCGTGAGTTTGATCAAACAATTTAGAATACTCCAATGTTCGATTGATTCAAAAATTTTCAAGAGTAGCAGACTGAAATTTTATTAAATTTTCGAAAAATCGTAAGAATTATATTTTGGTTTGAAAACATGACAACCGCTTTGTTAAATATTGGGTTGTTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGRCTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGCGGAGCAGCTGTTGTGACTTCTTCCAATGACGGCTCCACAGTAGACTTTTTGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTTGTTACATAACAAATATGACAATTGAATAGTCGCTGGAGTGGAAAACAAATCAAGTACACAAAGAAAAGGAAAATTCTGTAAATGAAGATTTTAAAATTTGTGAGACTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAAATAATTGTGCCTGAAACACAAGTTAATTTTATTTATACAAGGAAAACTCACTATTTTGAAAGCAATAATAAGTGTAGTCTGATACATGATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTATGTAAATGTCATGCTGAA</pcr_primer_p1>
		<pcr_primer_p2>GCCAACTTGAACTACCTATTTATT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGRCTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31178</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>114944</contig_pos>
        <strand></strand>
        <context>GRCTATACTC[T/C]TGTTGAACAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTC</left_flank>
        <right_flank>TGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCCATTCTCGGTTTTTAATTCTTATAAAGACAAATATAGGAAATAAGAAAATCAAAAGTATAAATAGGACCGAGACAATAACAATCGATAAAGTGGCTAAGGTGATAAAAATTAAAAACGACAAACTTAGATGTCTTGATGATTCTTCAATTTGTATAGTGGTAGATTCCATACTTAAAGAATTTTTTCTTGGAATCGTGAGTTTGATCAAACAATTTAGAATACTCCAATGTTCGATTGATTCAAAAATTTTCAAGAGTAGCAGACTGAAATTTTATTAAATTTTCGAAAAATCGTAAGAATTATATTTTGGTTTGAAAACATGACAACCGCTTTGTTAAATATTGGGTTGTTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGCGGAGCAGCTGTTGTGACTTCTTCCAATGACGGCTCCACAGTAGACTTTTTGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTTGTTACATAACAAATATGACAATTGAATAGTCGCTGGAGTGGAAAACAAATCAAGTACACAAAGAAAAGGAAAATTCTGTAAATGAAGATTTTAAAATTTGTGAGACTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAAATAATTGTGCCTGAAACACAAGTTAATTTTATTTATACAAGGAAAACTCACTATTTTGAAAGCAATAATAAGTGTAGTCTGATACATGATATACTTATGTG</canonical>
            <polymorphic>GTCCCATTCTCGGTTTTTAATTCTTATAAAGACAAATATAGGAAATAAGAAAATCAAAAGTATAAATAGGACCGAGACAATAACAATCGATAAAGTGGCTAAGGTGATAAAAATTAAAAACGACAAACTTAGATGTCTTGATGATTCTTCAATTTGTATAGTGGTAGATTCCATACTTAAAGAATTTTTTCTTGGAATCGTGAGTTTGATCAAACAATTTAGAATACTCCAATGTTCGATTGATTCAAAAATTTTCAAGAGTAGCAGACTGAAATTTTATTAAATTTTCGAAAAATCGTAAGAATTATATTTTGGTTTGAAAACATGACAACCGCTTTGTTAAATATTGGGTTGTTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCYTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGCGGAGCAGCTGTTGTGACTTCTTCCAATGACGGCTCCACAGTAGACTTTTTGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTTGTTACATAACAAATATGACAATTGAATAGTCGCTGGAGTGGAAAACAAATCAAGTACACAAAGAAAAGGAAAATTCTGTAAATGAAGATTTTAAAATTTGTGAGACTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAAATAATTGTGCCTGAAACACAAGTTAATTTTATTTATACAAGGAAAACTCACTATTTTGAAAGCAATAATAAGTGTAGTCTGATACATGATATACTTATGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTATGTAAATGTCATGCTGAA</pcr_primer_p1>
		<pcr_primer_p2>GCCAACTTGAACTACCTATTTATT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCYTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31179</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>114986</contig_pos>
        <strand></strand>
        <context>ATCGATTAAC[G/A]ATAAATTGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAAC</left_flank>
        <right_flank>ATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATAAGAAAATCAAAAGTATAAATAGGACCGAGACAATAACAATCGATAAAGTGGCTAAGGTGATAAAAATTAAAAACGACAAACTTAGATGTCTTGATGATTCTTCAATTTGTATAGTGGTAGATTCCATACTTAAAGAATTTTTTCTTGGAATCGTGAGTTTGATCAAACAATTTAGAATACTCCAATGTTCGATTGATTCAAAAATTTTCAAGAGTAGCAGACTGAAATTTTATTAAATTTTCGAAAAATCGTAAGAATTATATTTTGGTTTGAAAACATGACAACCGCTTTGTTAAATATTGGGTTGTTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGCGGAGCAGCTGTTGTGACTTCTTCCAATGACGGCTCCACAGTAGACTTTTTGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTTGTTACATAACAAATATGACAATTGAATAGTCGCTGGAGTGGAAAACAAATCAAGTACACAAAGAAAAGGAAAATTCTGTAAATGAAGATTTTAAAATTTGTGAGACTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAAATAATTGTGCCTGAAACACAAGTTAATTTTATTTATACAAGGAAAACTCACTATTTTGAAAGCAATAATAAGTGTAGTCTGATACATGATATACTTATGTGGCTTATTTTTAATCGATGATGCTAAATGTTGCAATTTTCGAA</canonical>
            <polymorphic>AAATAAGAAAATCAAAAGTATAAATAGGACCGAGACAATAACAATCGATAAAGTGGCTAAGGTGATAAAAATTAAAAACGACAAACTTAGATGTCTTGATGATTCTTCAATTTGTATAGTGGTAGATTCCATACTTAAAGAATTTTTTCTTGGAATCGTGAGTTTGATCAAACAATTTAGAATACTCCAATGTTCGATTGATTCAAAAATTTTCAAGAGTAGCAGACTGAAATTTTATTAAATTTTCGAAAAATCGTAAGAATTATATTTTGGTTTGAAAACATGACAACCGCTTTGTTAAATATTGGGTTGTTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACRATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGCGGAGCAGCTGTTGTGACTTCTTCCAATGACGGCTCCACAGTAGACTTTTTGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTTGTTACATAACAAATATGACAATTGAATAGTCGCTGGAGTGGAAAACAAATCAAGTACACAAAGAAAAGGAAAATTCTGTAAATGAAGATTTTAAAATTTGTGAGACTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAAATAATTGTGCCTGAAACACAAGTTAATTTTATTTATACAAGGAAAACTCACTATTTTGAAAGCAATAATAAGTGTAGTCTGATACATGATATACTTATGTGGCTTATTTTTAATCGATGATGCTAAATGTTGCAATTTTCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCGTTAAGCTTGAAAGTATT</pcr_primer_p1>
		<pcr_primer_p2>AAGAAGACTTTAGCTGATGTACG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGCGGAGCAGCTGTTGTGACTTCTTCCAATGACGGCTCCACAGTAGACTTTTTGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTT</canonical_amplicon>
		<polymorphic_amplicon>CAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACRATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGCGGAGCAGCTGTTGTGACTTCTTCCAATGACGGCTCCACAGTAGACTTTTTGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31180</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>115225</contig_pos>
        <strand></strand>
        <context>AAAGAAAAGG[A/G]AAATTCTGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTGAATAGTCGCTGGAGTGGAAAACAAATCAAGTACACAAAGAAAAGG</left_flank>
        <right_flank>AAATTCTGTAAATGAAGATTTTAAAATTTGTGAGACTCCTGGAATATGTT</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTTCGAAAAATCGTAAGAATTATATTTTGGTTTGAAAACATGACAACCGCTTTGTTAAATATTGGGTTGTTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGCGGAGCAGCTGTTGTGACTTCTTCCAATGACGGCTCCACAGTAGACTTTTTGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTTGTTACATAACAAATATGACAATTGAATAGTCGCTGGAGTGGAAAACAAATCAAGTACACAAAGAAAAGGAAAATTCTGTAAATGAAGATTTTAAAATTTGTGAGACTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAAATAATTGTGCCTGAAACACAAGTTAATTTTATTTATACAAGGAAAACTCACTATTTTGAAAGCAATAATAAGTGTAGTCTGATACATGATATACTTATGTGGCTTATTTTTAATCGATGATGCTAAATGTTGCAATTTTCGAATACTGATAACCATTGGGATGTACAATGCAGCACATAGAAATAAAACACTATTCAAAGTAATGTAATATATCTGAAAATTGGAGTATGGTTTTGTTCAAATTCGAAAGAAGAAATTCATCAAACACATGTAATTTGTTTAAGAAATGCACTTATCACATCTTCAGACTATCTTATTTTCTTTTTTAAATAACTCTAACATAAGGCGCGAAAATTATTTGGGCCTTCGTGCATTTTTGAAT</canonical>
            <polymorphic>AAATTTTCGAAAAATCGTAAGAATTATATTTTGGTTTGAAAACATGACAACCGCTTTGTTAAATATTGGGTTGTTTTATGTAAATGTCATGCTGAAAACTTCTAATTAATTTTCGCTGTGGTTATGAAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGCGGAGCAGCTGTTGTGACTTCTTCCAATGACGGCTCCACAGTAGACTTTTTGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTTGTTACATAACAAATATGACAATTGAATAGTCGCTGGAGTGGAAAACAAATCAAGTACACAAAGAAAAGGRAAATTCTGTAAATGAAGATTTTAAAATTTGTGAGACTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAAATAATTGTGCCTGAAACACAAGTTAATTTTATTTATACAAGGAAAACTCACTATTTTGAAAGCAATAATAAGTGTAGTCTGATACATGATATACTTATGTGGCTTATTTTTAATCGATGATGCTAAATGTTGCAATTTTCGAATACTGATAACCATTGGGATGTACAATGCAGCACATAGAAATAAAACACTATTCAAAGTAATGTAATATATCTGAAAATTGGAGTATGGTTTTGTTCAAATTCGAAAGAAGAAATTCATCAAACACATGTAATTTGTTTAAGAAATGCACTTATCACATCTTCAGACTATCTTATTTTCTTTTTTAAATAACTCTAACATAAGGCGCGAAAATTATTTGGGCCTTCGTGCATTTTTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAACTATCCGAAAAACATT</pcr_primer_p1>
		<pcr_primer_p2>TTACCACACTTTTATTCGTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTTGTTACATAACAAATATGACAATTGAATAGTCGCTGGAGTGGAAAACAAATCAAGTACACAAAGAAAAGGAAAATTCTGTAAATGAAGATTTTAAAATTTGTGAGACTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAA</canonical_amplicon>
		<polymorphic_amplicon>TGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTTGTTACATAACAAATATGACAATTGAATAGTCGCTGGAGTGGAAAACAAATCAAGTACACAAAGAAAAGGRAAATTCTGTAAATGAAGATTTTAAAATTTGTGAGACTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31181</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>115351</contig_pos>
        <strand>+</strand>
        <context>TAAATAATTG[C/T]GCCTGAAACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAAATAATTG</left_flank>
        <right_flank>GCCTGAAACACAAGTTAATTTTATTTATACAAGGAAAACTCACTATTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGCGGAGCAGCTGTTGTGACTTCTTCCAATGACGGCTCCACAGTAGACTTTTTGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTTGTTACATAACAAATATGACAATTGAATAGTCGCTGGAGTGGAAAACAAATCAAGTACACAAAGAAAAGGAAAATTCTGTAAATGAAGATTTTAAAATTTGTGAGACTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAAATAATTGTGCCTGAAACACAAGTTAATTTTATTTATACAAGGAAAACTCACTATTTTGAAAGCAATAATAAGTGTAGTCTGATACATGATATACTTATGTGGCTTATTTTTAATCGATGATGCTAAATGTTGCAATTTTCGAATACTGATAACCATTGGGATGTACAATGCAGCACATAGAAATAAAACACTATTCAAAGTAATGTAATATATCTGAAAATTGGAGTATGGTTTTGTTCAAATTCGAAAGAAGAAATTCATCAAACACATGTAATTTGTTTAAGAAATGCACTTATCACATCTTCAGACTATCTTATTTTCTTTTTTAAATAACTCTAACATAAGGCGCGAAAATTATTTGGGCCTTCGTGCATTTTTGAATTTCGAAAGAAAAATAAACCCACTAAAAGCCAATTTTCTTTTTCAGTTGACTTATCGAGGAAAACCAGTAATGCGAAAAGCAAGAAAAACAAAATGTAGATCCGTATAAACTTTGGTTTTCTTGGTG</canonical>
            <polymorphic>AAAATATTTCTAGTCTAGAAATGATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGCGGAGCAGCTGTTGTGACTTCTTCCAATGACGGCTCCACAGTAGACTTTTTGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTTGTTACATAACAAATATGACAATTGAATAGTCGCTGGAGTGGAAAACAAATCAAGTACACAAAGAAAAGGAAAATTCTGTAAATGAAGATTTTAAAATTTGTGAGACTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAAATAATTGYGCCTGAAACACAAGTTAATTTTATTTATACAAGGAAAACTCACTATTTTGAAAGCAATAATAAGTGTAGTCTGATACATGATATACTTATGTGGCTTATTTTTAATCGATGATGCTAAATGTTGCAATTTTCGAATACTGATAACCATTGGGATGTACAATGCAGCACATAGAAATAAAACACTATTCAAAGTAATGTAATATATCTGAAAATTGGAGTATGGTTTTGTTCAAATTCGAAAGAAGAAATTCATCAAACACATGTAATTTGTTTAAGAAATGCACTTATCACATCTTCAGACTATCTTATTTTCTTTTTTAAATAACTCTAACATAAGGCGCGAAAATTATTTGGGCCTTCGTGCATTTTTGAATTTCGAAAGAAAAATAAACCCACTAAAAGCCAATTTTCTTTTTCAGTTGACTTATCGAGGAAAACCAGTAATGCGAAAAGCAAGAAAAACAAAATGTAGATCCGTATAAACTTTGGTTTTCTTGGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>156 116 105 77 74 73 68 50 44 32 32 27 24 24 22 18 15 13 12 9 7 2 0</canonical_bands>
                <polymorphic_bands>156 116 105 77 74 73 68 50 44 32 32 27 24 24 22 22 18 15 12 7 2 0</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCCTGGAATATGTTTTTGAATA</pcr_primer_p1>
		<pcr_primer_p2>GTACATCCCAATGGTTATCAGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAAATAATTGTGCCTGAAACACAAGTTAATTTTATTTATACAAGGAAAACTCACTATTTTGAAAGCAATAATAAGTGTAGTCTGATACATGATATACTTATGTGGCTTATTTTTAATCGATGATGCTAAATGTTGCAATTTTCGAATACTGATAACCATTGGGATGTAC</canonical_amplicon>
		<polymorphic_amplicon>CTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAAATAATTGYGCCTGAAACACAAGTTAATTTTATTTATACAAGGAAAACTCACTATTTTGAAAGCAATAATAAGTGTAGTCTGATACATGATATACTTATGTGGCTTATTTTTAATCGATGATGCTAAATGTTGCAATTTTCGAATACTGATAACCATTGGGATGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31182</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>115374</contig_pos>
        <strand>+</strand>
        <context>AGTTAATTTT[A/T]TTTRTACAAR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CACGAATAAAAGTGTGGTAAATAATTGTGCCTGAAACACAAGTTAATTTT</left_flank>
        <right_flank>TTTATACAAGGAAAACTCACTATTTTGAAAGCAATAATAAGTGTAGTCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGCGGAGCAGCTGTTGTGACTTCTTCCAATGACGGCTCCACAGTAGACTTTTTGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTTGTTACATAACAAATATGACAATTGAATAGTCGCTGGAGTGGAAAACAAATCAAGTACACAAAGAAAAGGAAAATTCTGTAAATGAAGATTTTAAAATTTGTGAGACTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAAATAATTGTGCCTGAAACACAAGTTAATTTTATTTATACAAGGAAAACTCACTATTTTGAAAGCAATAATAAGTGTAGTCTGATACATGATATACTTATGTGGCTTATTTTTAATCGATGATGCTAAATGTTGCAATTTTCGAATACTGATAACCATTGGGATGTACAATGCAGCACATAGAAATAAAACACTATTCAAAGTAATGTAATATATCTGAAAATTGGAGTATGGTTTTGTTCAAATTCGAAAGAAGAAATTCATCAAACACATGTAATTTGTTTAAGAAATGCACTTATCACATCTTCAGACTATCTTATTTTCTTTTTTAAATAACTCTAACATAAGGCGCGAAAATTATTTGGGCCTTCGTGCATTTTTGAATTTCGAAAGAAAAATAAACCCACTAAAAGCCAATTTTCTTTTTCAGTTGACTTATCGAGGAAAACCAGTAATGCGAAAAGCAAGAAAAACAAAATGTAGATCCGTATAAACTTTGGTTTTCTTGGTGTTATATATGGTTCAAGAAAAGAG</canonical>
            <polymorphic>ATATCATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGCGGAGCAGCTGTTGTGACTTCTTCCAATGACGGCTCCACAGTAGACTTTTTGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTTGTTACATAACAAATATGACAATTGAATAGTCGCTGGAGTGGAAAACAAATCAAGTACACAAAGAAAAGGAAAATTCTGTAAATGAAGATTTTAAAATTTGTGAGACTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAAATAATTGTGCCTGAAACACAAGTTAATTTTWTTTATACAAGGAAAACTCACTATTTTGAAAGCAATAATAAGTGTAGTCTGATACATGATATACTTATGTGGCTTATTTTTAATCGATGATGCTAAATGTTGCAATTTTCGAATACTGATAACCATTGGGATGTACAATGCAGCACATAGAAATAAAACACTATTCAAAGTAATGTAATATATCTGAAAATTGGAGTATGGTTTTGTTCAAATTCGAAAGAAGAAATTCATCAAACACATGTAATTTGTTTAAGAAATGCACTTATCACATCTTCAGACTATCTTATTTTCTTTTTTAAATAACTCTAACATAAGGCGCGAAAATTATTTGGGCCTTCGTGCATTTTTGAATTTCGAAAGAAAAATAAACCCACTAAAAGCCAATTTTCTTTTTCAGTTGACTTATCGAGGAAAACCAGTAATGCGAAAAGCAAGAAAAACAAAATGTAGATCCGTATAAACTTTGGTTTTCTTGGTGTTATATATGGTTCAAGAAAAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCTGGAATATGTTTTTGAATA</pcr_primer_p1>
		<pcr_primer_p2>GTACATCCCAATGGTTATCAGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAAATAATTGTGCCTGAAACACAAGTTAATTTTATTTATACAAGGAAAACTCACTATTTTGAAAGCAATAATAAGTGTAGTCTGATACATGATATACTTATGTGGCTTATTTTTAATCGATGATGCTAAATGTTGCAATTTTCGAATACTGATAACCATTGGGATGTAC</canonical_amplicon>
		<polymorphic_amplicon>CTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAAATAATTGTGCCTGAAACACAAGTTAATTTTWTTTATACAAGGAAAACTCACTATTTTGAAAGCAATAATAAGTGTAGTCTGATACATGATATACTTATGTGGCTTATTTTTAATCGATGATGCTAAATGTTGCAATTTTCGAATACTGATAACCATTGGGATGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31183</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>115378</contig_pos>
        <strand>+</strand>
        <context>AATTTTWTTT[A/G]TACAARGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATAAAAGTGTGGTAAATAATTGTGCCTGAAACACAAGTTAATTTTATTT</left_flank>
        <right_flank>TACAAGGAAAACTCACTATTTTGAAAGCAATAATAAGTGTAGTCTGATAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGCGGAGCAGCTGTTGTGACTTCTTCCAATGACGGCTCCACAGTAGACTTTTTGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTTGTTACATAACAAATATGACAATTGAATAGTCGCTGGAGTGGAAAACAAATCAAGTACACAAAGAAAAGGAAAATTCTGTAAATGAAGATTTTAAAATTTGTGAGACTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAAATAATTGTGCCTGAAACACAAGTTAATTTTATTTATACAAGGAAAACTCACTATTTTGAAAGCAATAATAAGTGTAGTCTGATACATGATATACTTATGTGGCTTATTTTTAATCGATGATGCTAAATGTTGCAATTTTCGAATACTGATAACCATTGGGATGTACAATGCAGCACATAGAAATAAAACACTATTCAAAGTAATGTAATATATCTGAAAATTGGAGTATGGTTTTGTTCAAATTCGAAAGAAGAAATTCATCAAACACATGTAATTTGTTTAAGAAATGCACTTATCACATCTTCAGACTATCTTATTTTCTTTTTTAAATAACTCTAACATAAGGCGCGAAAATTATTTGGGCCTTCGTGCATTTTTGAATTTCGAAAGAAAAATAAACCCACTAAAAGCCAATTTTCTTTTTCAGTTGACTTATCGAGGAAAACCAGTAATGCGAAAAGCAAGAAAAACAAAATGTAGATCCGTATAAACTTTGGTTTTCTTGGTGTTATATATGGTTCAAGAAAAGAGAAGA</canonical>
            <polymorphic>CATAAACAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGCGGAGCAGCTGTTGTGACTTCTTCCAATGACGGCTCCACAGTAGACTTTTTGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTTGTTACATAACAAATATGACAATTGAATAGTCGCTGGAGTGGAAAACAAATCAAGTACACAAAGAAAAGGAAAATTCTGTAAATGAAGATTTTAAAATTTGTGAGACTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAAATAATTGTGCCTGAAACACAAGTTAATTTTATTTRTACAAGGAAAACTCACTATTTTGAAAGCAATAATAAGTGTAGTCTGATACATGATATACTTATGTGGCTTATTTTTAATCGATGATGCTAAATGTTGCAATTTTCGAATACTGATAACCATTGGGATGTACAATGCAGCACATAGAAATAAAACACTATTCAAAGTAATGTAATATATCTGAAAATTGGAGTATGGTTTTGTTCAAATTCGAAAGAAGAAATTCATCAAACACATGTAATTTGTTTAAGAAATGCACTTATCACATCTTCAGACTATCTTATTTTCTTTTTTAAATAACTCTAACATAAGGCGCGAAAATTATTTGGGCCTTCGTGCATTTTTGAATTTCGAAAGAAAAATAAACCCACTAAAAGCCAATTTTCTTTTTCAGTTGACTTATCGAGGAAAACCAGTAATGCGAAAAGCAAGAAAAACAAAATGTAGATCCGTATAAACTTTGGTTTTCTTGGTGTTATATATGGTTCAAGAAAAGAGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCTGGAATATGTTTTTGAATA</pcr_primer_p1>
		<pcr_primer_p2>GTACATCCCAATGGTTATCAGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAAATAATTGTGCCTGAAACACAAGTTAATTTTATTTATACAAGGAAAACTCACTATTTTGAAAGCAATAATAAGTGTAGTCTGATACATGATATACTTATGTGGCTTATTTTTAATCGATGATGCTAAATGTTGCAATTTTCGAATACTGATAACCATTGGGATGTAC</canonical_amplicon>
		<polymorphic_amplicon>CTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAAATAATTGTGCCTGAAACACAAGTTAATTTTATTTRTACAAGGAAAACTCACTATTTTGAAAGCAATAATAAGTGTAGTCTGATACATGATATACTTATGTGGCTTATTTTTAATCGATGATGCTAAATGTTGCAATTTTCGAATACTGATAACCATTGGGATGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31184</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>115384</contig_pos>
        <strand>+</strand>
        <context>WTTTRTACAA[A/G]GAAAACTCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTGTGGTAAATAATTGTGCCTGAAACACAAGTTAATTTTATTTATACAA</left_flank>
        <right_flank>GAAAACTCACTATTTTGAAAGCAATAATAAGTGTAGTCTGATACATGATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGCGGAGCAGCTGTTGTGACTTCTTCCAATGACGGCTCCACAGTAGACTTTTTGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTTGTTACATAACAAATATGACAATTGAATAGTCGCTGGAGTGGAAAACAAATCAAGTACACAAAGAAAAGGAAAATTCTGTAAATGAAGATTTTAAAATTTGTGAGACTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAAATAATTGTGCCTGAAACACAAGTTAATTTTATTTATACAAGGAAAACTCACTATTTTGAAAGCAATAATAAGTGTAGTCTGATACATGATATACTTATGTGGCTTATTTTTAATCGATGATGCTAAATGTTGCAATTTTCGAATACTGATAACCATTGGGATGTACAATGCAGCACATAGAAATAAAACACTATTCAAAGTAATGTAATATATCTGAAAATTGGAGTATGGTTTTGTTCAAATTCGAAAGAAGAAATTCATCAAACACATGTAATTTGTTTAAGAAATGCACTTATCACATCTTCAGACTATCTTATTTTCTTTTTTAAATAACTCTAACATAAGGCGCGAAAATTATTTGGGCCTTCGTGCATTTTTGAATTTCGAAAGAAAAATAAACCCACTAAAAGCCAATTTTCTTTTTCAGTTGACTTATCGAGGAAAACCAGTAATGCGAAAAGCAAGAAAAACAAAATGTAGATCCGTATAAACTTTGGTTTTCTTGGTGTTATATATGGTTCAAGAAAAGAGAAGAAGTAGA</canonical>
            <polymorphic>CAAAAAAAGAAGGTTTATTGCTCAGCGTTAAGCTTGAAAGTATTAAATTGACTATACTCTTGTTGAACAACGAGAATGAAATTCAAATAGCATCGATTAACGATAAATTGAGAATGTTATCCACCGAAAACAAAAATAAATAGGTAGTTCAAGTTGGCGGAGCAGCTGTTGTGACTTCTTCCAATGACGGCTCCACAGTAGACTTTTTGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTTGTTACATAACAAATATGACAATTGAATAGTCGCTGGAGTGGAAAACAAATCAAGTACACAAAGAAAAGGAAAATTCTGTAAATGAAGATTTTAAAATTTGTGAGACTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAAATAATTGTGCCTGAAACACAAGTTAATTTTATTTATACAARGAAAACTCACTATTTTGAAAGCAATAATAAGTGTAGTCTGATACATGATATACTTATGTGGCTTATTTTTAATCGATGATGCTAAATGTTGCAATTTTCGAATACTGATAACCATTGGGATGTACAATGCAGCACATAGAAATAAAACACTATTCAAAGTAATGTAATATATCTGAAAATTGGAGTATGGTTTTGTTCAAATTCGAAAGAAGAAATTCATCAAACACATGTAATTTGTTTAAGAAATGCACTTATCACATCTTCAGACTATCTTATTTTCTTTTTTAAATAACTCTAACATAAGGCGCGAAAATTATTTGGGCCTTCGTGCATTTTTGAATTTCGAAAGAAAAATAAACCCACTAAAAGCCAATTTTCTTTTTCAGTTGACTTATCGAGGAAAACCAGTAATGCGAAAAGCAAGAAAAACAAAATGTAGATCCGTATAAACTTTGGTTTTCTTGGTGTTATATATGGTTCAAGAAAAGAGAAGAAGTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCTGGAATATGTTTTTGAATA</pcr_primer_p1>
		<pcr_primer_p2>GTACATCCCAATGGTTATCAGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAAATAATTGTGCCTGAAACACAAGTTAATTTTATTTATACAAGGAAAACTCACTATTTTGAAAGCAATAATAAGTGTAGTCTGATACATGATATACTTATGTGGCTTATTTTTAATCGATGATGCTAAATGTTGCAATTTTCGAATACTGATAACCATTGGGATGTAC</canonical_amplicon>
		<polymorphic_amplicon>CTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAAATAATTGTGCCTGAAACACAAGTTAATTTTATTTATACAARGAAAACTCACTATTTTGAAAGCAATAATAAGTGTAGTCTGATACATGATATACTTATGTGGCTTATTTTTAATCGATGATGCTAAATGTTGCAATTTTCGAATACTGATAACCATTGGGATGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31185</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>115567</contig_pos>
        <strand>+</strand>
        <context>CTGAAAATTG[G/T]AGTATGGTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CACATAGAAATAAAACACTATTCAAAGTAATGTAATATATCTGAAAATTG</left_flank>
        <right_flank>AGTATGGTTTTGTTCAAATTCGAAAGAAGAAATTCATCAAACACATGTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGACGGCTCCACAGTAGACTTTTTGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTTGTTACATAACAAATATGACAATTGAATAGTCGCTGGAGTGGAAAACAAATCAAGTACACAAAGAAAAGGAAAATTCTGTAAATGAAGATTTTAAAATTTGTGAGACTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAAATAATTGTGCCTGAAACACAAGTTAATTTTATTTATACAAGGAAAACTCACTATTTTGAAAGCAATAATAAGTGTAGTCTGATACATGATATACTTATGTGGCTTATTTTTAATCGATGATGCTAAATGTTGCAATTTTCGAATACTGATAACCATTGGGATGTACAATGCAGCACATAGAAATAAAACACTATTCAAAGTAATGTAATATATCTGAAAATTGGAGTATGGTTTTGTTCAAATTCGAAAGAAGAAATTCATCAAACACATGTAATTTGTTTAAGAAATGCACTTATCACATCTTCAGACTATCTTATTTTCTTTTTTAAATAACTCTAACATAAGGCGCGAAAATTATTTGGGCCTTCGTGCATTTTTGAATTTCGAAAGAAAAATAAACCCACTAAAAGCCAATTTTCTTTTTCAGTTGACTTATCGAGGAAAACCAGTAATGCGAAAAGCAAGAAAAACAAAATGTAGATCCGTATAAACTTTGGTTTTCTTGGTGTTATATATGGTTCAAGAAAAGAGAAGAAGTAGAGAAGAAATCTCTGAATAGCCAAAAGAGACACAATTATATGATGAGTATGACAAATGAGAACCATAAACACGAACATAGCTGGAGTTATAATCGCCGAAGAGAAGAATACAATGAACATTGCGAATAGGAGGAAAAACAAATAATACAAACAGATTGCTTTGAAAAAATGATTAGTTATTGGAT</canonical>
            <polymorphic>ATGACGGCTCCACAGTAGACTTTTTGAAAACTATCCGAAAAACATTTCTCAGCGTTGATCGTTTCCGTACATCAGCTAAAGTCTTCTTGTTACATAACAAATATGACAATTGAATAGTCGCTGGAGTGGAAAACAAATCAAGTACACAAAGAAAAGGAAAATTCTGTAAATGAAGATTTTAAAATTTGTGAGACTCCTGGAATATGTTTTTGAATAATTTTAAAACGCCTACATTGGAGAAGGCATCTCCGCCGAACACGAATAAAAGTGTGGTAAATAATTGTGCCTGAAACACAAGTTAATTTTATTTATACAAGGAAAACTCACTATTTTGAAAGCAATAATAAGTGTAGTCTGATACATGATATACTTATGTGGCTTATTTTTAATCGATGATGCTAAATGTTGCAATTTTCGAATACTGATAACCATTGGGATGTACAATGCAGCACATAGAAATAAAACACTATTCAAAGTAATGTAATATATCTGAAAATTGKAGTATGGTTTTGTTCAAATTCGAAAGAAGAAATTCATCAAACACATGTAATTTGTTTAAGAAATGCACTTATCACATCTTCAGACTATCTTATTTTCTTTTTTAAATAACTCTAACATAAGGCGCGAAAATTATTTGGGCCTTCGTGCATTTTTGAATTTCGAAAGAAAAATAAACCCACTAAAAGCCAATTTTCTTTTTCAGTTGACTTATCGAGGAAAACCAGTAATGCGAAAAGCAAGAAAAACAAAATGTAGATCCGTATAAACTTTGGTTTTCTTGGTGTTATATATGGTTCAAGAAAAGAGAAGAAGTAGAGAAGAAATCTCTGAATAGCCAAAAGAGACACAATTATATGATGAGTATGACAAATGAGAACCATAAACACGAACATAGCTGGAGTTATAATCGCCGAAGAGAAGAATACAATGAACATTGCGAATAGGAGGAAAAACAAATAATACAAACAGATTGCTTTGAAAAAATGATTAGTTATTGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCTTATTTTTAATCGATGATG</pcr_primer_p1>
		<pcr_primer_p2>GCGCCTTATGTTAGAGTTATTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGCTTATTTTTAATCGATGATGCTAAATGTTGCAATTTTCGAATACTGATAACCATTGGGATGTACAATGCAGCACATAGAAATAAAACACTATTCAAAGTAATGTAATATATCTGAAAATTGGAGTATGGTTTTGTTCAAATTCGAAAGAAGAAATTCATCAAACACATGTAATTTGTTTAAGAAATGCACTTATCACATCTTCAGACTATCTTATTTTCTTTTTTAAATAACTCTAACATAAGGCGC</canonical_amplicon>
		<polymorphic_amplicon>GGCTTATTTTTAATCGATGATGCTAAATGTTGCAATTTTCGAATACTGATAACCATTGGGATGTACAATGCAGCACATAGAAATAAAACACTATTCAAAGTAATGTAATATATCTGAAAATTGKAGTATGGTTTTGTTCAAATTCGAAAGAAGAAATTCATCAAACACATGTAATTTGTTTAAGAAATGCACTTATCACATCTTCAGACTATCTTATTTTCTTTTTTAAATAACTCTAACATAAGGCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31186</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>117500</contig_pos>
        <strand>+</strand>
        <context>AGAAATAAAT[A/G]AWACCAACAK</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATTGGTCTCGAAAATCATATCAATCCCAATAATGAAGAGAAATAAAT</left_flank>
        <right_flank>AAACCAACATATGGCTTTGAAAAAATGGTTAGTGATTGGATAGACGGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGAAAACCCACAAGTAGGATGTATTCAAGGTTTGAGCCTTGATAATAAGAACTGTCCCAGGCAAAATAAAACACTAATGCGGAAATTATGAACACTATCAAATATAAATATTTGAATTTAGGTTTTTGGCTCTTCGAAGTGATGTATGGTTCGGCGGATGGGAAAAAGTAAAGAAATAATCTCTGGAAAGCCAATAAAGATAGAATCAAATGATGGGTATGAGTGATGACAAGTAGAAAAAAGAAACAGTATGGATAAAAGGCAAAGTCATTTCTGAAATGGATATTTTGAAATACATAATTTGAAGGTGGTAAATTTTCAACTGTTTCAATTTATACAAAAACTTATGAAAATGAAAACACAAAAAGTCCCCGAAAAAACGGAACATAAAATTAAGACCACACCACCAGTGATTGTGTAAAACTAACCTTCCATAAAATTCAGAAAAAAATTGGTCTCGAAAATCATATCAATCCCAATAATGAAGAGAAATAAATAAAACCAACATATGGCTTTGAAAAAATGGTTAGTGATTGGATAGACGGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCCCAAGTGTTACCCTCGAAAAATCTAGACCTTTATGGTTGAATAGAGCATGAAAAGTTATTTTAGGATCCGATCAAATTAGTTGGTAAAAAATTTTTCAGGAGTTATGACCCGAAACGTACCAAAAAACGACAAAAAATCATAACTTTGTCAGTTTAAGCTCGTTTAATTAAAGGTGGGGGGACAGGAGATTTTACGGAGGATTTTTGGAGCCGGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCAATCTGCGTACCGCAGTCGTCCTAACCCTTTTGTTTACCATCGGGCGAGCGCACCTCCTTTGGCCGCGTGGCTCAGTCGGTAGCTGCGCTGTACCCCTGAGCTGCCCATCATGAGTTCAATTCCTCGAGGGGCGTATTTAGAAG</canonical>
            <polymorphic>ATTGAAAACCCACAAGTAGGATGTATTCAAGGTTTGAGCCTTGATAATAAGAACTGTCCCAGGCAAAATAAAACACTAATGCGGAAATTATGAACACTATCAAATATAAATATTTGAATTTAGGTTTTTGGCTCTTCGAAGTGATGTATGGTTCGGCGGATGGGAAAAAGTAAAGAAATAATCTCTGGAAAGCCAATAAAGATAGAATCAAATGATGGGTATGAGTGATGACAAGTAGAAAAAAGAAACAGTATGGATAAAAGGCAAAGTCATTTCTGAAATGGATATTTTGAAATACATAATTTGAAGGTGGTAAATTTTCAACTGTTTCAATTTATACAAAAACTTATGAAAATGAAAACACAAAAAGTCCCCGAAAAAACGGAACATAAAATTAAGACCACACCACCAGTGATTGTGTAAAACTAACCTTCCATAAAATTCAGAAAAAAATTGGTCTCGAAAATCATATCAATCCCAATAATGAAGAGAAATAAATRAAACCAACATATGGCTTTGAAAAAATGGTTAGTGATTGGATAGACGGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCCCAAGTGTTACCCTCGAAAAATCTAGACCTTTATGGTTGAATAGAGCATGAAAAGTTATTTTAGGATCCGATCAAATTAGTTGGTAAAAAATTTTTCAGGAGTTATGACCCGAAACGTACCAAAAAACGACAAAAAATCATAACTTTGTCAGTTTAAGCTCGTTTAATTAAAGGTGGGGGGACAGGAGATTTTACGGAGGATTTTTGGAGCCGGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCAATCTGCGTACCGCAGTCGTCCTAACCCTTTTGTTTACCATCGGGCGAGCGCACCTCCTTTGGCCGCGTGGCTCAGTCGGTAGCTGCGCTGTACCCCTGAGCTGCCCATCATGAGTTCAATTCCTCGAGGGGCGTATTTAGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTGGTCTCGAAAATCAT</pcr_primer_p1>
		<pcr_primer_p2>CTCCGTAAAATCTCCTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>352</pcr_amplicon_size>
		<canonical_amplicon>AAAATTGGTCTCGAAAATCATATCAATCCCAATAATGAAGAGAAATAAATAAAACCAACATATGGCTTTGAAAAAATGGTTAGTGATTGGATAGACGGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCCCAAGTGTTACCCTCGAAAAATCTAGACCTTTATGGTTGAATAGAGCATGAAAAGTTATTTTAGGATCCGATCAAATTAGTTGGTAAAAAATTTTTCAGGAGTTATGACCCGAAACGTACCAAAAAACGACAAAAAATCATAACTTTGTCAGTTTAAGCTCGTTTAATTAAAGGTGGGGGGACAGGAGATTTTACGGAG</canonical_amplicon>
		<polymorphic_amplicon>AAAATTGGTCTCGAAAATCATATCAATCCCAATAATGAAGAGAAATAAATRAAACCAACATATGGCTTTGAAAAAATGGTTAGTGATTGGATAGACGGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCCCAAGTGTTACCCTCGAAAAATCTAGACCTTTATGGTTGAATAGAGCATGAAAAGTTATTTTAGGATCCGATCAAATTAGTTGGTAAAAAATTTTTCAGGAGTTATGACCCGAAACGTACCAAAAAACGACAAAAAATCATAACTTTGTCAGTTTAAGCTCGTTTAATTAAAGGTGGGGGGACAGGAGATTTTACGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31187</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>117502</contig_pos>
        <strand>+</strand>
        <context>AAATAAATRA[A/T]ACCAACAKAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTGGTCTCGAAAATCATATCAATCCCAATAATGAAGAGAAATAAATAA</left_flank>
        <right_flank>ACCAACATATGGCTTTGAAAAAATGGTTAGTGATTGGATAGACGGAAGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAACCCACAAGTAGGATGTATTCAAGGTTTGAGCCTTGATAATAAGAACTGTCCCAGGCAAAATAAAACACTAATGCGGAAATTATGAACACTATCAAATATAAATATTTGAATTTAGGTTTTTGGCTCTTCGAAGTGATGTATGGTTCGGCGGATGGGAAAAAGTAAAGAAATAATCTCTGGAAAGCCAATAAAGATAGAATCAAATGATGGGTATGAGTGATGACAAGTAGAAAAAAGAAACAGTATGGATAAAAGGCAAAGTCATTTCTGAAATGGATATTTTGAAATACATAATTTGAAGGTGGTAAATTTTCAACTGTTTCAATTTATACAAAAACTTATGAAAATGAAAACACAAAAAGTCCCCGAAAAAACGGAACATAAAATTAAGACCACACCACCAGTGATTGTGTAAAACTAACCTTCCATAAAATTCAGAAAAAAATTGGTCTCGAAAATCATATCAATCCCAATAATGAAGAGAAATAAATAAAACCAACATATGGCTTTGAAAAAATGGTTAGTGATTGGATAGACGGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCCCAAGTGTTACCCTCGAAAAATCTAGACCTTTATGGTTGAATAGAGCATGAAAAGTTATTTTAGGATCCGATCAAATTAGTTGGTAAAAAATTTTTCAGGAGTTATGACCCGAAACGTACCAAAAAACGACAAAAAATCATAACTTTGTCAGTTTAAGCTCGTTTAATTAAAGGTGGGGGGACAGGAGATTTTACGGAGGATTTTTGGAGCCGGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCAATCTGCGTACCGCAGTCGTCCTAACCCTTTTGTTTACCATCGGGCGAGCGCACCTCCTTTGGCCGCGTGGCTCAGTCGGTAGCTGCGCTGTACCCCTGAGCTGCCCATCATGAGTTCAATTCCTCGAGGGGCGTATTTAGAAGGA</canonical>
            <polymorphic>TGAAAACCCACAAGTAGGATGTATTCAAGGTTTGAGCCTTGATAATAAGAACTGTCCCAGGCAAAATAAAACACTAATGCGGAAATTATGAACACTATCAAATATAAATATTTGAATTTAGGTTTTTGGCTCTTCGAAGTGATGTATGGTTCGGCGGATGGGAAAAAGTAAAGAAATAATCTCTGGAAAGCCAATAAAGATAGAATCAAATGATGGGTATGAGTGATGACAAGTAGAAAAAAGAAACAGTATGGATAAAAGGCAAAGTCATTTCTGAAATGGATATTTTGAAATACATAATTTGAAGGTGGTAAATTTTCAACTGTTTCAATTTATACAAAAACTTATGAAAATGAAAACACAAAAAGTCCCCGAAAAAACGGAACATAAAATTAAGACCACACCACCAGTGATTGTGTAAAACTAACCTTCCATAAAATTCAGAAAAAAATTGGTCTCGAAAATCATATCAATCCCAATAATGAAGAGAAATAAATAAWACCAACATATGGCTTTGAAAAAATGGTTAGTGATTGGATAGACGGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCCCAAGTGTTACCCTCGAAAAATCTAGACCTTTATGGTTGAATAGAGCATGAAAAGTTATTTTAGGATCCGATCAAATTAGTTGGTAAAAAATTTTTCAGGAGTTATGACCCGAAACGTACCAAAAAACGACAAAAAATCATAACTTTGTCAGTTTAAGCTCGTTTAATTAAAGGTGGGGGGACAGGAGATTTTACGGAGGATTTTTGGAGCCGGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCAATCTGCGTACCGCAGTCGTCCTAACCCTTTTGTTTACCATCGGGCGAGCGCACCTCCTTTGGCCGCGTGGCTCAGTCGGTAGCTGCGCTGTACCCCTGAGCTGCCCATCATGAGTTCAATTCCTCGAGGGGCGTATTTAGAAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTGGTCTCGAAAATCATA</pcr_primer_p1>
		<pcr_primer_p2>CTCCGTAAAATCTCCTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>352</pcr_amplicon_size>
		<canonical_amplicon>AAAATTGGTCTCGAAAATCATATCAATCCCAATAATGAAGAGAAATAAATAAAACCAACATATGGCTTTGAAAAAATGGTTAGTGATTGGATAGACGGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCCCAAGTGTTACCCTCGAAAAATCTAGACCTTTATGGTTGAATAGAGCATGAAAAGTTATTTTAGGATCCGATCAAATTAGTTGGTAAAAAATTTTTCAGGAGTTATGACCCGAAACGTACCAAAAAACGACAAAAAATCATAACTTTGTCAGTTTAAGCTCGTTTAATTAAAGGTGGGGGGACAGGAGATTTTACGGAG</canonical_amplicon>
		<polymorphic_amplicon>AAAATTGGTCTCGAAAATCATATCAATCCCAATAATGAAGAGAAATAAATAAWACCAACATATGGCTTTGAAAAAATGGTTAGTGATTGGATAGACGGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCCCAAGTGTTACCCTCGAAAAATCTAGACCTTTATGGTTGAATAGAGCATGAAAAGTTATTTTAGGATCCGATCAAATTAGTTGGTAAAAAATTTTTCAGGAGTTATGACCCGAAACGTACCAAAAAACGACAAAAAATCATAACTTTGTCAGTTTAAGCTCGTTTAATTAAAGGTGGGGGGACAGGAGATTTTACGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31188</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>117510</contig_pos>
        <strand>+</strand>
        <context>RAWACCAACA[G/T]ATGGCTTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGAAAATCATATCAATCCCAATAATGAAGAGAAATAAATAAAACCAACA</left_flank>
        <right_flank>ATGGCTTTGAAAAAATGGTTAGTGATTGGATAGACGGAAGTCTGAAAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACAAGTAGGATGTATTCAAGGTTTGAGCCTTGATAATAAGAACTGTCCCAGGCAAAATAAAACACTAATGCGGAAATTATGAACACTATCAAATATAAATATTTGAATTTAGGTTTTTGGCTCTTCGAAGTGATGTATGGTTCGGCGGATGGGAAAAAGTAAAGAAATAATCTCTGGAAAGCCAATAAAGATAGAATCAAATGATGGGTATGAGTGATGACAAGTAGAAAAAAGAAACAGTATGGATAAAAGGCAAAGTCATTTCTGAAATGGATATTTTGAAATACATAATTTGAAGGTGGTAAATTTTCAACTGTTTCAATTTATACAAAAACTTATGAAAATGAAAACACAAAAAGTCCCCGAAAAAACGGAACATAAAATTAAGACCACACCACCAGTGATTGTGTAAAACTAACCTTCCATAAAATTCAGAAAAAAATTGGTCTCGAAAATCATATCAATCCCAATAATGAAGAGAAATAAATAAAACCAACATATGGCTTTGAAAAAATGGTTAGTGATTGGATAGACGGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCCCAAGTGTTACCCTCGAAAAATCTAGACCTTTATGGTTGAATAGAGCATGAAAAGTTATTTTAGGATCCGATCAAATTAGTTGGTAAAAAATTTTTCAGGAGTTATGACCCGAAACGTACCAAAAAACGACAAAAAATCATAACTTTGTCAGTTTAAGCTCGTTTAATTAAAGGTGGGGGGACAGGAGATTTTACGGAGGATTTTTGGAGCCGGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCAATCTGCGTACCGCAGTCGTCCTAACCCTTTTGTTTACCATCGGGCGAGCGCACCTCCTTTGGCCGCGTGGCTCAGTCGGTAGCTGCGCTGTACCCCTGAGCTGCCCATCATGAGTTCAATTCCTCGAGGGGCGTATTTAGAAGGAATTTCGAG</canonical>
            <polymorphic>CACAAGTAGGATGTATTCAAGGTTTGAGCCTTGATAATAAGAACTGTCCCAGGCAAAATAAAACACTAATGCGGAAATTATGAACACTATCAAATATAAATATTTGAATTTAGGTTTTTGGCTCTTCGAAGTGATGTATGGTTCGGCGGATGGGAAAAAGTAAAGAAATAATCTCTGGAAAGCCAATAAAGATAGAATCAAATGATGGGTATGAGTGATGACAAGTAGAAAAAAGAAACAGTATGGATAAAAGGCAAAGTCATTTCTGAAATGGATATTTTGAAATACATAATTTGAAGGTGGTAAATTTTCAACTGTTTCAATTTATACAAAAACTTATGAAAATGAAAACACAAAAAGTCCCCGAAAAAACGGAACATAAAATTAAGACCACACCACCAGTGATTGTGTAAAACTAACCTTCCATAAAATTCAGAAAAAAATTGGTCTCGAAAATCATATCAATCCCAATAATGAAGAGAAATAAATAAAACCAACAKATGGCTTTGAAAAAATGGTTAGTGATTGGATAGACGGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCCCAAGTGTTACCCTCGAAAAATCTAGACCTTTATGGTTGAATAGAGCATGAAAAGTTATTTTAGGATCCGATCAAATTAGTTGGTAAAAAATTTTTCAGGAGTTATGACCCGAAACGTACCAAAAAACGACAAAAAATCATAACTTTGTCAGTTTAAGCTCGTTTAATTAAAGGTGGGGGGACAGGAGATTTTACGGAGGATTTTTGGAGCCGGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCAATCTGCGTACCGCAGTCGTCCTAACCCTTTTGTTTACCATCGGGCGAGCGCACCTCCTTTGGCCGCGTGGCTCAGTCGGTAGCTGCGCTGTACCCCTGAGCTGCCCATCATGAGTTCAATTCCTCGAGGGGCGTATTTAGAAGGAATTTCGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATATG</site>
                <isoschizomers>
                    <enzyme>FauNDI</enzyme>
                    <enzyme>NdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTCTCGAAAATCATATCAATC</pcr_primer_p1>
		<pcr_primer_p2>CTCCGTAAAATCTCCTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>346</pcr_amplicon_size>
		<canonical_amplicon>GGTCTCGAAAATCATATCAATCCCAATAATGAAGAGAAATAAATAAAACCAACATATGGCTTTGAAAAAATGGTTAGTGATTGGATAGACGGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCCCAAGTGTTACCCTCGAAAAATCTAGACCTTTATGGTTGAATAGAGCATGAAAAGTTATTTTAGGATCCGATCAAATTAGTTGGTAAAAAATTTTTCAGGAGTTATGACCCGAAACGTACCAAAAAACGACAAAAAATCATAACTTTGTCAGTTTAAGCTCGTTTAATTAAAGGTGGGGGGACAGGAGATTTTACGGAG</canonical_amplicon>
		<polymorphic_amplicon>GGTCTCGAAAATCATATCAATCCCAATAATGAAGAGAAATAAATAAAACCAACAKATGGCTTTGAAAAAATGGTTAGTGATTGGATAGACGGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCCCAAGTGTTACCCTCGAAAAATCTAGACCTTTATGGTTGAATAGAGCATGAAAAGTTATTTTAGGATCCGATCAAATTAGTTGGTAAAAAATTTTTCAGGAGTTATGACCCGAAACGTACCAAAAAACGACAAAAAATCATAACTTTGTCAGTTTAAGCTCGTTTAATTAAAGGTGGGGGGACAGGAGATTTTACGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31189</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>117522</contig_pos>
        <strand>+</strand>
        <context>TGGCTTTGAA[A/G]AAATGGTTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAATCCCAATAATGAAGAGAAATAAATAAAACCAACATATGGCTTTGAA</left_flank>
        <right_flank>AAATGGTTAGTGATTGGATAGACGGAAGTCTGAAAGTTATCGAAAATTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATTCAAGGTTTGAGCCTTGATAATAAGAACTGTCCCAGGCAAAATAAAACACTAATGCGGAAATTATGAACACTATCAAATATAAATATTTGAATTTAGGTTTTTGGCTCTTCGAAGTGATGTATGGTTCGGCGGATGGGAAAAAGTAAAGAAATAATCTCTGGAAAGCCAATAAAGATAGAATCAAATGATGGGTATGAGTGATGACAAGTAGAAAAAAGAAACAGTATGGATAAAAGGCAAAGTCATTTCTGAAATGGATATTTTGAAATACATAATTTGAAGGTGGTAAATTTTCAACTGTTTCAATTTATACAAAAACTTATGAAAATGAAAACACAAAAAGTCCCCGAAAAAACGGAACATAAAATTAAGACCACACCACCAGTGATTGTGTAAAACTAACCTTCCATAAAATTCAGAAAAAAATTGGTCTCGAAAATCATATCAATCCCAATAATGAAGAGAAATAAATAAAACCAACATATGGCTTTGAAAAAATGGTTAGTGATTGGATAGACGGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCCCAAGTGTTACCCTCGAAAAATCTAGACCTTTATGGTTGAATAGAGCATGAAAAGTTATTTTAGGATCCGATCAAATTAGTTGGTAAAAAATTTTTCAGGAGTTATGACCCGAAACGTACCAAAAAACGACAAAAAATCATAACTTTGTCAGTTTAAGCTCGTTTAATTAAAGGTGGGGGGACAGGAGATTTTACGGAGGATTTTTGGAGCCGGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCAATCTGCGTACCGCAGTCGTCCTAACCCTTTTGTTTACCATCGGGCGAGCGCACCTCCTTTGGCCGCGTGGCTCAGTCGGTAGCTGCGCTGTACCCCTGAGCTGCCCATCATGAGTTCAATTCCTCGAGGGGCGTATTTAGAAGGAATTTCGAGAACATTTTTTTT</canonical>
            <polymorphic>GTATTCAAGGTTTGAGCCTTGATAATAAGAACTGTCCCAGGCAAAATAAAACACTAATGCGGAAATTATGAACACTATCAAATATAAATATTTGAATTTAGGTTTTTGGCTCTTCGAAGTGATGTATGGTTCGGCGGATGGGAAAAAGTAAAGAAATAATCTCTGGAAAGCCAATAAAGATAGAATCAAATGATGGGTATGAGTGATGACAAGTAGAAAAAAGAAACAGTATGGATAAAAGGCAAAGTCATTTCTGAAATGGATATTTTGAAATACATAATTTGAAGGTGGTAAATTTTCAACTGTTTCAATTTATACAAAAACTTATGAAAATGAAAACACAAAAAGTCCCCGAAAAAACGGAACATAAAATTAAGACCACACCACCAGTGATTGTGTAAAACTAACCTTCCATAAAATTCAGAAAAAAATTGGTCTCGAAAATCATATCAATCCCAATAATGAAGAGAAATAAATAAAACCAACATATGGCTTTGAARAAATGGTTAGTGATTGGATAGACGGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCCCAAGTGTTACCCTCGAAAAATCTAGACCTTTATGGTTGAATAGAGCATGAAAAGTTATTTTAGGATCCGATCAAATTAGTTGGTAAAAAATTTTTCAGGAGTTATGACCCGAAACGTACCAAAAAACGACAAAAAATCATAACTTTGTCAGTTTAAGCTCGTTTAATTAAAGGTGGGGGGACAGGAGATTTTACGGAGGATTTTTGGAGCCGGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCAATCTGCGTACCGCAGTCGTCCTAACCCTTTTGTTTACCATCGGGCGAGCGCACCTCCTTTGGCCGCGTGGCTCAGTCGGTAGCTGCGCTGTACCCCTGAGCTGCCCATCATGAGTTCAATTCCTCGAGGGGCGTATTTAGAAGGAATTTCGAGAACATTTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCAATCCCAATAATGAAGAGA</pcr_primer_p1>
		<pcr_primer_p2>CTCCGTAAAATCTCCTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>332</pcr_amplicon_size>
		<canonical_amplicon>TATCAATCCCAATAATGAAGAGAAATAAATAAAACCAACATATGGCTTTGAAAAAATGGTTAGTGATTGGATAGACGGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCCCAAGTGTTACCCTCGAAAAATCTAGACCTTTATGGTTGAATAGAGCATGAAAAGTTATTTTAGGATCCGATCAAATTAGTTGGTAAAAAATTTTTCAGGAGTTATGACCCGAAACGTACCAAAAAACGACAAAAAATCATAACTTTGTCAGTTTAAGCTCGTTTAATTAAAGGTGGGGGGACAGGAGATTTTACGGAG</canonical_amplicon>
		<polymorphic_amplicon>TATCAATCCCAATAATGAAGAGAAATAAATAAAACCAACATATGGCTTTGAARAAATGGTTAGTGATTGGATAGACGGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCCCAAGTGTTACCCTCGAAAAATCTAGACCTTTATGGTTGAATAGAGCATGAAAAGTTATTTTAGGATCCGATCAAATTAGTTGGTAAAAAATTTTTCAGGAGTTATGACCCGAAACGTACCAAAAAACGACAAAAAATCATAACTTTGTCAGTTTAAGCTCGTTTAATTAAAGGTGGGGGGACAGGAGATTTTACGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31190</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>117534</contig_pos>
        <strand>+</strand>
        <context>AATGGTTAGT[G/T]WTTGGATAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGAAGAGAAATAAATAAAACCAACATATGGCTTTGAAAAAATGGTTAGT</left_flank>
        <right_flank>ATTGGATAGACGGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGCCTTGATAATAAGAACTGTCCCAGGCAAAATAAAACACTAATGCGGAAATTATGAACACTATCAAATATAAATATTTGAATTTAGGTTTTTGGCTCTTCGAAGTGATGTATGGTTCGGCGGATGGGAAAAAGTAAAGAAATAATCTCTGGAAAGCCAATAAAGATAGAATCAAATGATGGGTATGAGTGATGACAAGTAGAAAAAAGAAACAGTATGGATAAAAGGCAAAGTCATTTCTGAAATGGATATTTTGAAATACATAATTTGAAGGTGGTAAATTTTCAACTGTTTCAATTTATACAAAAACTTATGAAAATGAAAACACAAAAAGTCCCCGAAAAAACGGAACATAAAATTAAGACCACACCACCAGTGATTGTGTAAAACTAACCTTCCATAAAATTCAGAAAAAAATTGGTCTCGAAAATCATATCAATCCCAATAATGAAGAGAAATAAATAAAACCAACATATGGCTTTGAAAAAATGGTTAGTGATTGGATAGACGGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCCCAAGTGTTACCCTCGAAAAATCTAGACCTTTATGGTTGAATAGAGCATGAAAAGTTATTTTAGGATCCGATCAAATTAGTTGGTAAAAAATTTTTCAGGAGTTATGACCCGAAACGTACCAAAAAACGACAAAAAATCATAACTTTGTCAGTTTAAGCTCGTTTAATTAAAGGTGGGGGGACAGGAGATTTTACGGAGGATTTTTGGAGCCGGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCAATCTGCGTACCGCAGTCGTCCTAACCCTTTTGTTTACCATCGGGCGAGCGCACCTCCTTTGGCCGCGTGGCTCAGTCGGTAGCTGCGCTGTACCCCTGAGCTGCCCATCATGAGTTCAATTCCTCGAGGGGCGTATTTAGAAGGAATTTCGAGAACATTTTTTTTCCTCTCTCCCCA</canonical>
            <polymorphic>TGAGCCTTGATAATAAGAACTGTCCCAGGCAAAATAAAACACTAATGCGGAAATTATGAACACTATCAAATATAAATATTTGAATTTAGGTTTTTGGCTCTTCGAAGTGATGTATGGTTCGGCGGATGGGAAAAAGTAAAGAAATAATCTCTGGAAAGCCAATAAAGATAGAATCAAATGATGGGTATGAGTGATGACAAGTAGAAAAAAGAAACAGTATGGATAAAAGGCAAAGTCATTTCTGAAATGGATATTTTGAAATACATAATTTGAAGGTGGTAAATTTTCAACTGTTTCAATTTATACAAAAACTTATGAAAATGAAAACACAAAAAGTCCCCGAAAAAACGGAACATAAAATTAAGACCACACCACCAGTGATTGTGTAAAACTAACCTTCCATAAAATTCAGAAAAAAATTGGTCTCGAAAATCATATCAATCCCAATAATGAAGAGAAATAAATAAAACCAACATATGGCTTTGAAAAAATGGTTAGTKATTGGATAGACGGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCCCAAGTGTTACCCTCGAAAAATCTAGACCTTTATGGTTGAATAGAGCATGAAAAGTTATTTTAGGATCCGATCAAATTAGTTGGTAAAAAATTTTTCAGGAGTTATGACCCGAAACGTACCAAAAAACGACAAAAAATCATAACTTTGTCAGTTTAAGCTCGTTTAATTAAAGGTGGGGGGACAGGAGATTTTACGGAGGATTTTTGGAGCCGGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCAATCTGCGTACCGCAGTCGTCCTAACCCTTTTGTTTACCATCGGGCGAGCGCACCTCCTTTGGCCGCGTGGCTCAGTCGGTAGCTGCGCTGTACCCCTGAGCTGCCCATCATGAGTTCAATTCCTCGAGGGGCGTATTTAGAAGGAATTTCGAGAACATTTTTTTTCCTCTCTCCCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>169 114 108 85 84 69 62 55 51 47 41 40 21 20 17 6 6 3 2</canonical_bands>
                <polymorphic_bands>169 169 108 85 84 69 62 51 47 41 40 21 20 17 6 6 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCCAATAATGAAGAGAAATAAA</pcr_primer_p1>
		<pcr_primer_p2>CTCCGTAAAATCTCCTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>326</pcr_amplicon_size>
		<canonical_amplicon>TCCCAATAATGAAGAGAAATAAATAAAACCAACATATGGCTTTGAAAAAATGGTTAGTGATTGGATAGACGGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCCCAAGTGTTACCCTCGAAAAATCTAGACCTTTATGGTTGAATAGAGCATGAAAAGTTATTTTAGGATCCGATCAAATTAGTTGGTAAAAAATTTTTCAGGAGTTATGACCCGAAACGTACCAAAAAACGACAAAAAATCATAACTTTGTCAGTTTAAGCTCGTTTAATTAAAGGTGGGGGGACAGGAGATTTTACGGAG</canonical_amplicon>
		<polymorphic_amplicon>TCCCAATAATGAAGAGAAATAAATAAAACCAACATATGGCTTTGAAAAAATGGTTAGTKATTGGATAGACGGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCCCAAGTGTTACCCTCGAAAAATCTAGACCTTTATGGTTGAATAGAGCATGAAAAGTTATTTTAGGATCCGATCAAATTAGTTGGTAAAAAATTTTTCAGGAGTTATGACCCGAAACGTACCAAAAAACGACAAAAAATCATAACTTTGTCAGTTTAAGCTCGTTTAATTAAAGGTGGGGGGACAGGAGATTTTACGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31191</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>117535</contig_pos>
        <strand>+</strand>
        <context>ATGGTTAGTK[A/T]TTGGATAGAY</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAAGAGAAATAAATAAAACCAACATATGGCTTTGAAAAAATGGTTAGTG</left_flank>
        <right_flank>TTGGATAGACGGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCCTTGATAATAAGAACTGTCCCAGGCAAAATAAAACACTAATGCGGAAATTATGAACACTATCAAATATAAATATTTGAATTTAGGTTTTTGGCTCTTCGAAGTGATGTATGGTTCGGCGGATGGGAAAAAGTAAAGAAATAATCTCTGGAAAGCCAATAAAGATAGAATCAAATGATGGGTATGAGTGATGACAAGTAGAAAAAAGAAACAGTATGGATAAAAGGCAAAGTCATTTCTGAAATGGATATTTTGAAATACATAATTTGAAGGTGGTAAATTTTCAACTGTTTCAATTTATACAAAAACTTATGAAAATGAAAACACAAAAAGTCCCCGAAAAAACGGAACATAAAATTAAGACCACACCACCAGTGATTGTGTAAAACTAACCTTCCATAAAATTCAGAAAAAAATTGGTCTCGAAAATCATATCAATCCCAATAATGAAGAGAAATAAATAAAACCAACATATGGCTTTGAAAAAATGGTTAGTGATTGGATAGACGGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCCCAAGTGTTACCCTCGAAAAATCTAGACCTTTATGGTTGAATAGAGCATGAAAAGTTATTTTAGGATCCGATCAAATTAGTTGGTAAAAAATTTTTCAGGAGTTATGACCCGAAACGTACCAAAAAACGACAAAAAATCATAACTTTGTCAGTTTAAGCTCGTTTAATTAAAGGTGGGGGGACAGGAGATTTTACGGAGGATTTTTGGAGCCGGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCAATCTGCGTACCGCAGTCGTCCTAACCCTTTTGTTTACCATCGGGCGAGCGCACCTCCTTTGGCCGCGTGGCTCAGTCGGTAGCTGCGCTGTACCCCTGAGCTGCCCATCATGAGTTCAATTCCTCGAGGGGCGTATTTAGAAGGAATTTCGAGAACATTTTTTTTCCTCTCTCCCCAC</canonical>
            <polymorphic>GAGCCTTGATAATAAGAACTGTCCCAGGCAAAATAAAACACTAATGCGGAAATTATGAACACTATCAAATATAAATATTTGAATTTAGGTTTTTGGCTCTTCGAAGTGATGTATGGTTCGGCGGATGGGAAAAAGTAAAGAAATAATCTCTGGAAAGCCAATAAAGATAGAATCAAATGATGGGTATGAGTGATGACAAGTAGAAAAAAGAAACAGTATGGATAAAAGGCAAAGTCATTTCTGAAATGGATATTTTGAAATACATAATTTGAAGGTGGTAAATTTTCAACTGTTTCAATTTATACAAAAACTTATGAAAATGAAAACACAAAAAGTCCCCGAAAAAACGGAACATAAAATTAAGACCACACCACCAGTGATTGTGTAAAACTAACCTTCCATAAAATTCAGAAAAAAATTGGTCTCGAAAATCATATCAATCCCAATAATGAAGAGAAATAAATAAAACCAACATATGGCTTTGAAAAAATGGTTAGTGWTTGGATAGACGGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCCCAAGTGTTACCCTCGAAAAATCTAGACCTTTATGGTTGAATAGAGCATGAAAAGTTATTTTAGGATCCGATCAAATTAGTTGGTAAAAAATTTTTCAGGAGTTATGACCCGAAACGTACCAAAAAACGACAAAAAATCATAACTTTGTCAGTTTAAGCTCGTTTAATTAAAGGTGGGGGGACAGGAGATTTTACGGAGGATTTTTGGAGCCGGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCAATCTGCGTACCGCAGTCGTCCTAACCCTTTTGTTTACCATCGGGCGAGCGCACCTCCTTTGGCCGCGTGGCTCAGTCGGTAGCTGCGCTGTACCCCTGAGCTGCCCATCATGAGTTCAATTCCTCGAGGGGCGTATTTAGAAGGAATTTCGAGAACATTTTTTTTCCTCTCTCCCCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCCAATAATGAAGAGAAATAAA</pcr_primer_p1>
		<pcr_primer_p2>CTCCGTAAAATCTCCTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>326</pcr_amplicon_size>
		<canonical_amplicon>TCCCAATAATGAAGAGAAATAAATAAAACCAACATATGGCTTTGAAAAAATGGTTAGTGATTGGATAGACGGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCCCAAGTGTTACCCTCGAAAAATCTAGACCTTTATGGTTGAATAGAGCATGAAAAGTTATTTTAGGATCCGATCAAATTAGTTGGTAAAAAATTTTTCAGGAGTTATGACCCGAAACGTACCAAAAAACGACAAAAAATCATAACTTTGTCAGTTTAAGCTCGTTTAATTAAAGGTGGGGGGACAGGAGATTTTACGGAG</canonical_amplicon>
		<polymorphic_amplicon>TCCCAATAATGAAGAGAAATAAATAAAACCAACATATGGCTTTGAAAAAATGGTTAGTGWTTGGATAGACGGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCCCAAGTGTTACCCTCGAAAAATCTAGACCTTTATGGTTGAATAGAGCATGAAAAGTTATTTTAGGATCCGATCAAATTAGTTGGTAAAAAATTTTTCAGGAGTTATGACCCGAAACGTACCAAAAAACGACAAAAAATCATAACTTTGTCAGTTTAAGCTCGTTTAATTAAAGGTGGGGGGACAGGAGATTTTACGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31192</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>117545</contig_pos>
        <strand>+</strand>
        <context>WTTGGATAGA[C/T]GGAAGTCKGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAATAAAACCAACATATGGCTTTGAAAAAATGGTTAGTGATTGGATAGA</left_flank>
        <right_flank>GGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAAGAACTGTCCCAGGCAAAATAAAACACTAATGCGGAAATTATGAACACTATCAAATATAAATATTTGAATTTAGGTTTTTGGCTCTTCGAAGTGATGTATGGTTCGGCGGATGGGAAAAAGTAAAGAAATAATCTCTGGAAAGCCAATAAAGATAGAATCAAATGATGGGTATGAGTGATGACAAGTAGAAAAAAGAAACAGTATGGATAAAAGGCAAAGTCATTTCTGAAATGGATATTTTGAAATACATAATTTGAAGGTGGTAAATTTTCAACTGTTTCAATTTATACAAAAACTTATGAAAATGAAAACACAAAAAGTCCCCGAAAAAACGGAACATAAAATTAAGACCACACCACCAGTGATTGTGTAAAACTAACCTTCCATAAAATTCAGAAAAAAATTGGTCTCGAAAATCATATCAATCCCAATAATGAAGAGAAATAAATAAAACCAACATATGGCTTTGAAAAAATGGTTAGTGATTGGATAGACGGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCCCAAGTGTTACCCTCGAAAAATCTAGACCTTTATGGTTGAATAGAGCATGAAAAGTTATTTTAGGATCCGATCAAATTAGTTGGTAAAAAATTTTTCAGGAGTTATGACCCGAAACGTACCAAAAAACGACAAAAAATCATAACTTTGTCAGTTTAAGCTCGTTTAATTAAAGGTGGGGGGACAGGAGATTTTACGGAGGATTTTTGGAGCCGGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCAATCTGCGTACCGCAGTCGTCCTAACCCTTTTGTTTACCATCGGGCGAGCGCACCTCCTTTGGCCGCGTGGCTCAGTCGGTAGCTGCGCTGTACCCCTGAGCTGCCCATCATGAGTTCAATTCCTCGAGGGGCGTATTTAGAAGGAATTTCGAGAACATTTTTTTTCCTCTCTCCCCACCTTTAAATTC</canonical>
            <polymorphic>AATAAGAACTGTCCCAGGCAAAATAAAACACTAATGCGGAAATTATGAACACTATCAAATATAAATATTTGAATTTAGGTTTTTGGCTCTTCGAAGTGATGTATGGTTCGGCGGATGGGAAAAAGTAAAGAAATAATCTCTGGAAAGCCAATAAAGATAGAATCAAATGATGGGTATGAGTGATGACAAGTAGAAAAAAGAAACAGTATGGATAAAAGGCAAAGTCATTTCTGAAATGGATATTTTGAAATACATAATTTGAAGGTGGTAAATTTTCAACTGTTTCAATTTATACAAAAACTTATGAAAATGAAAACACAAAAAGTCCCCGAAAAAACGGAACATAAAATTAAGACCACACCACCAGTGATTGTGTAAAACTAACCTTCCATAAAATTCAGAAAAAAATTGGTCTCGAAAATCATATCAATCCCAATAATGAAGAGAAATAAATAAAACCAACATATGGCTTTGAAAAAATGGTTAGTGATTGGATAGAYGGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCCCAAGTGTTACCCTCGAAAAATCTAGACCTTTATGGTTGAATAGAGCATGAAAAGTTATTTTAGGATCCGATCAAATTAGTTGGTAAAAAATTTTTCAGGAGTTATGACCCGAAACGTACCAAAAAACGACAAAAAATCATAACTTTGTCAGTTTAAGCTCGTTTAATTAAAGGTGGGGGGACAGGAGATTTTACGGAGGATTTTTGGAGCCGGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCAATCTGCGTACCGCAGTCGTCCTAACCCTTTTGTTTACCATCGGGCGAGCGCACCTCCTTTGGCCGCGTGGCTCAGTCGGTAGCTGCGCTGTACCCCTGAGCTGCCCATCATGAGTTCAATTCCTCGAGGGGCGTATTTAGAAGGAATTTCGAGAACATTTTTTTTCCTCTCTCCCCACCTTTAAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNNGTC</site>
                <isoschizomers>
                    <enzyme>BoxI</enzyme>
                    <enzyme>BstPAI</enzyme>
                    <enzyme>PshAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCCAATAATGAAGAGAAATAAA</pcr_primer_p1>
		<pcr_primer_p2>CTCCGTAAAATCTCCTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>326</pcr_amplicon_size>
		<canonical_amplicon>TCCCAATAATGAAGAGAAATAAATAAAACCAACATATGGCTTTGAAAAAATGGTTAGTGATTGGATAGACGGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCCCAAGTGTTACCCTCGAAAAATCTAGACCTTTATGGTTGAATAGAGCATGAAAAGTTATTTTAGGATCCGATCAAATTAGTTGGTAAAAAATTTTTCAGGAGTTATGACCCGAAACGTACCAAAAAACGACAAAAAATCATAACTTTGTCAGTTTAAGCTCGTTTAATTAAAGGTGGGGGGACAGGAGATTTTACGGAG</canonical_amplicon>
		<polymorphic_amplicon>TCCCAATAATGAAGAGAAATAAATAAAACCAACATATGGCTTTGAAAAAATGGTTAGTGATTGGATAGAYGGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCCCAAGTGTTACCCTCGAAAAATCTAGACCTTTATGGTTGAATAGAGCATGAAAAGTTATTTTAGGATCCGATCAAATTAGTTGGTAAAAAATTTTTCAGGAGTTATGACCCGAAACGTACCAAAAAACGACAAAAAATCATAACTTTGTCAGTTTAAGCTCGTTTAATTAAAGGTGGGGGGACAGGAGATTTTACGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31193</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>117553</contig_pos>
        <strand>+</strand>
        <context>GAYGGAAGTC[G/T]GAAAGTTATC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACCAACATATGGCTTTGAAAAAATGGTTAGTGATTGGATAGACGGAAGTC</left_flank>
        <right_flank>GAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTCCCAGGCAAAATAAAACACTAATGCGGAAATTATGAACACTATCAAATATAAATATTTGAATTTAGGTTTTTGGCTCTTCGAAGTGATGTATGGTTCGGCGGATGGGAAAAAGTAAAGAAATAATCTCTGGAAAGCCAATAAAGATAGAATCAAATGATGGGTATGAGTGATGACAAGTAGAAAAAAGAAACAGTATGGATAAAAGGCAAAGTCATTTCTGAAATGGATATTTTGAAATACATAATTTGAAGGTGGTAAATTTTCAACTGTTTCAATTTATACAAAAACTTATGAAAATGAAAACACAAAAAGTCCCCGAAAAAACGGAACATAAAATTAAGACCACACCACCAGTGATTGTGTAAAACTAACCTTCCATAAAATTCAGAAAAAAATTGGTCTCGAAAATCATATCAATCCCAATAATGAAGAGAAATAAATAAAACCAACATATGGCTTTGAAAAAATGGTTAGTGATTGGATAGACGGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCCCAAGTGTTACCCTCGAAAAATCTAGACCTTTATGGTTGAATAGAGCATGAAAAGTTATTTTAGGATCCGATCAAATTAGTTGGTAAAAAATTTTTCAGGAGTTATGACCCGAAACGTACCAAAAAACGACAAAAAATCATAACTTTGTCAGTTTAAGCTCGTTTAATTAAAGGTGGGGGGACAGGAGATTTTACGGAGGATTTTTGGAGCCGGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCAATCTGCGTACCGCAGTCGTCCTAACCCTTTTGTTTACCATCGGGCGAGCGCACCTCCTTTGGCCGCGTGGCTCAGTCGGTAGCTGCGCTGTACCCCTGAGCTGCCCATCATGAGTTCAATTCCTCGAGGGGCGTATTTAGAAGGAATTTCGAGAACATTTTTTTTCCTCTCTCCCCACCTTTAAATTCAAAAAATA</canonical>
            <polymorphic>CTGTCCCAGGCAAAATAAAACACTAATGCGGAAATTATGAACACTATCAAATATAAATATTTGAATTTAGGTTTTTGGCTCTTCGAAGTGATGTATGGTTCGGCGGATGGGAAAAAGTAAAGAAATAATCTCTGGAAAGCCAATAAAGATAGAATCAAATGATGGGTATGAGTGATGACAAGTAGAAAAAAGAAACAGTATGGATAAAAGGCAAAGTCATTTCTGAAATGGATATTTTGAAATACATAATTTGAAGGTGGTAAATTTTCAACTGTTTCAATTTATACAAAAACTTATGAAAATGAAAACACAAAAAGTCCCCGAAAAAACGGAACATAAAATTAAGACCACACCACCAGTGATTGTGTAAAACTAACCTTCCATAAAATTCAGAAAAAAATTGGTCTCGAAAATCATATCAATCCCAATAATGAAGAGAAATAAATAAAACCAACATATGGCTTTGAAAAAATGGTTAGTGATTGGATAGACGGAAGTCKGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCCCAAGTGTTACCCTCGAAAAATCTAGACCTTTATGGTTGAATAGAGCATGAAAAGTTATTTTAGGATCCGATCAAATTAGTTGGTAAAAAATTTTTCAGGAGTTATGACCCGAAACGTACCAAAAAACGACAAAAAATCATAACTTTGTCAGTTTAAGCTCGTTTAATTAAAGGTGGGGGGACAGGAGATTTTACGGAGGATTTTTGGAGCCGGGGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCAATCTGCGTACCGCAGTCGTCCTAACCCTTTTGTTTACCATCGGGCGAGCGCACCTCCTTTGGCCGCGTGGCTCAGTCGGTAGCTGCGCTGTACCCCTGAGCTGCCCATCATGAGTTCAATTCCTCGAGGGGCGTATTTAGAAGGAATTTCGAGAACATTTTTTTTCCTCTCTCCCCACCTTTAAATTCAAAAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCCAATAATGAAGAGAAATAAA</pcr_primer_p1>
		<pcr_primer_p2>CTCCGTAAAATCTCCTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>326</pcr_amplicon_size>
		<canonical_amplicon>TCCCAATAATGAAGAGAAATAAATAAAACCAACATATGGCTTTGAAAAAATGGTTAGTGATTGGATAGACGGAAGTCTGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCCCAAGTGTTACCCTCGAAAAATCTAGACCTTTATGGTTGAATAGAGCATGAAAAGTTATTTTAGGATCCGATCAAATTAGTTGGTAAAAAATTTTTCAGGAGTTATGACCCGAAACGTACCAAAAAACGACAAAAAATCATAACTTTGTCAGTTTAAGCTCGTTTAATTAAAGGTGGGGGGACAGGAGATTTTACGGAG</canonical_amplicon>
		<polymorphic_amplicon>TCCCAATAATGAAGAGAAATAAATAAAACCAACATATGGCTTTGAAAAAATGGTTAGTGATTGGATAGACGGAAGTCKGAAAGTTATCGAAAATTCTAAAATTCTAAACTCTCACATGGAATGACTCCCAAGTGTTACCCTCGAAAAATCTAGACCTTTATGGTTGAATAGAGCATGAAAAGTTATTTTAGGATCCGATCAAATTAGTTGGTAAAAAATTTTTCAGGAGTTATGACCCGAAACGTACCAAAAAACGACAAAAAATCATAACTTTGTCAGTTTAAGCTCGTTTAATTAAAGGTGGGGGGACAGGAGATTTTACGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31194</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>126644</contig_pos>
        <strand></strand>
        <context>aaaatctcag[G/A]gtatactaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAGTGTTGAAAAAGTGTTCCAGAATTCTTCAATTTTTCTGAAAATCTCAG</left_flank>
        <right_flank>GTATACTAAATAAAGTTGGAGCTTCATTTTTGTAATTGACAACTTTTTCG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGGACTGATCAAATTTCCAGGTTCAAAGGAATTCAGAAAGAGCAAAATCACGAAACATGAAGAAATCGCTGATGGAACAAATCTTTTTGGTTGTTTTCTGGTTGGCATTGTTAGTTTTTATATTTCTCATAATCCTTTTAATTTTTATTTTCCCATTTTTTCTCATGGTTTACAGTTTTAACTATTATCGAGATAGAGAGGTAAATTTGGAGATACTGTAAAACCTCTAATAGAACGANNNNNNNNNNAATGCCTTTGAAATATAATTGAGCAGACACAACGACATTTTAATCCGACATATGATCAATAATTTTCTCTTTATAAGCAAGCTTTTTTAAGCCAACTCGAGTAAACATAACATCGTTCGAATATGGATTCTAGCACATCTGATTCAAGAAATTCGTTCTATTAGAGGTTTTACGGTATTCTAAAAATTTCGGAAGATTTAGAGTGTTGAAAAAGTGTTCCAGAATTCTTCAATTTTTCTGAAAATCTCAGGGTATACTAAATAAAGTTGGAGCTTCATTTTTGTAATTGACAACTTTTTCGCCAAGTTTCATTCTGATGAGATATGTCGTTTGTAACAAAAAGTCCCGAAACTTCAAAAGTAGCAGTGAAATGAGACTTCTGTATTCTTAAAACCGCTTATCTTGATTGGCTGGATTTATGCAAAAAAAAAGTTGTAAAATACAAAATTAAAGGAGGCCAGATACCAAAAAAAAAATTTTTCCTGATATTTTGCCTAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGTGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAACTGTCCCCCGAAATTTTTGCTGTCTCGCCTTTTTTAAAGCATTAGTTTTGTTTATTGTTGTAATGGAATATTTATAGATTTTGAATAACTCTCATAGGAACCGTGATGATTGAGCTTGA</canonical>
            <polymorphic>GCGGACTGATCAAATTTCCAGGTTCAAAGGAATTCAGAAAGAGCAAAATCACGAAACATGAAGAAATCGCTGATGGAACAAATCTTTTTGGTTGTTTTCTGGTTGGCATTGTTAGTTTTTATATTTCTCATAATCCTTTTAATTTTTATTTTCCCATTTTTTCTCATGGTTTACAGTTTTAACTATTATCGAGATAGAGAGGTAAATTTGGAGATACTGTAAAACCTCTAATAGAACGANNNNNNNNNNAATGCCTTTGAAATATAATTGAGCAGACACAACGACATTTTAATCCGACATATGATCAATAATTTTCTCTTTATAAGCAAGCTTTTTTAAGCCAACTCGAGTAAACATAACATCGTTCGAATATGGATTCTAGCACATCTGATTCAAGAAATTCGTTCTATTAGAGGTTTTACGGTATTCTAAAAATTTCGGAAGATTTAGAGTGTTGAAAAAGTGTTCCAGAATTCTTCAATTTTTCTGAAAATCTCAGRGTATACTAAATAAAGTTGGAGCTTCATTTTTGTAATTGACAACTTTTTCGCCAAGTTTCATTCTGATGAGATATGTCGTTTGTAACAAAAAGTCCCGAAACTTCAAAAGTAGCAGTGAAATGAGACTTCTGTATTCTTAAAACCGCTTATCTTGATTGGCTGGATTTATGCAAAAAAAAAGTTGTAAAATACAAAATTAAAGGAGGCCAGATACCAAAAAAAAAATTTTTCCTGATATTTTGCCTAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGTGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAACTGTCCCCCGAAATTTTTGCTGTCTCGCCTTTTTTAAAGCATTAGTTTTGTTTATTGTTGTAATGGAATATTTATAGATTTTGAATAACTCTCATAGGAACCGTGATGATTGAGCTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGGATTCTAGCACATCTGATT</pcr_primer_p1>
		<pcr_primer_p2>TTTCACTGCTACTTTTGAAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATGGATTCTAGCACATCTGATTCAAGAAATTCGTTCTATTAGAGGTTTTACGGTATTCTAAAAATTTCGGAAGATTTAGAGTGTTGAAAAAGTGTTCCAGAATTCTTCAATTTTTCTGAAAATCTCAGGGTATACTAAATAAAGTTGGAGCTTCATTTTTGTAATTGACAACTTTTTCGCCAAGTTTCATTCTGATGAGATATGTCGTTTGTAACAAAAAGTCCCGAAACTTCAAAAGTAGCAGTGAAA</canonical_amplicon>
		<polymorphic_amplicon>TATGGATTCTAGCACATCTGATTCAAGAAATTCGTTCTATTAGAGGTTTTACGGTATTCTAAAAATTTCGGAAGATTTAGAGTGTTGAAAAAGTGTTCCAGAATTCTTCAATTTTTCTGAAAATCTCAGRGTATACTAAATAAAGTTGGAGCTTCATTTTTGTAATTGACAACTTTTTCGCCAAGTTTCATTCTGATGAGATATGTCGTTTGTAACAAAAAGTCCCGAAACTTCAAAAGTAGCAGTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31195</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>126738</contig_pos>
        <strand></strand>
        <context>AACAAAAAGT[C/G]CCGAAACTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTTCGCCAAGTTTCATTCTGATGAGATATGTCGTTTGTAACAAAAAGT</left_flank>
        <right_flank>CCGAAACTTCAAAAGTAGCAGTGAAATGAGACTTCTGTATTCTTAAAACC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCTGGTTGGCATTGTTAGTTTTTATATTTCTCATAATCCTTTTAATTTTTATTTTCCCATTTTTTCTCATGGTTTACAGTTTTAACTATTATCGAGATAGAGAGGTAAATTTGGAGATACTGTAAAACCTCTAATAGAACGANNNNNNNNNNAATGCCTTTGAAATATAATTGAGCAGACACAACGACATTTTAATCCGACATATGATCAATAATTTTCTCTTTATAAGCAAGCTTTTTTAAGCCAACTCGAGTAAACATAACATCGTTCGAATATGGATTCTAGCACATCTGATTCAAGAAATTCGTTCTATTAGAGGTTTTACGGTATTCTAAAAATTTCGGAAGATTTAGAGTGTTGAAAAAGTGTTCCAGAATTCTTCAATTTTTCTGAAAATCTCAGGGTATACTAAATAAAGTTGGAGCTTCATTTTTGTAATTGACAACTTTTTCGCCAAGTTTCATTCTGATGAGATATGTCGTTTGTAACAAAAAGTCCCGAAACTTCAAAAGTAGCAGTGAAATGAGACTTCTGTATTCTTAAAACCGCTTATCTTGATTGGCTGGATTTATGCAAAAAAAAAGTTGTAAAATACAAAATTAAAGGAGGCCAGATACCAAAAAAAAAATTTTTCCTGATATTTTGCCTAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGTGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAACTGTCCCCCGAAATTTTTGCTGTCTCGCCTTTTTTAAAGCATTAGTTTTGTTTATTGTTGTAATGGAATATTTATAGATTTTGAATAACTCTCATAGGAACCGTGATGATTGAGCTTGAAGTTCAAAGTCAGGGGACCCTTCTATTTCAGGTTTTACGGTATTTTTCTTCTATTATTTTCAGACCACCATTTTTTTTATCACTAATCACTTCT</canonical>
            <polymorphic>TTTTCTGGTTGGCATTGTTAGTTTTTATATTTCTCATAATCCTTTTAATTTTTATTTTCCCATTTTTTCTCATGGTTTACAGTTTTAACTATTATCGAGATAGAGAGGTAAATTTGGAGATACTGTAAAACCTCTAATAGAACGANNNNNNNNNNAATGCCTTTGAAATATAATTGAGCAGACACAACGACATTTTAATCCGACATATGATCAATAATTTTCTCTTTATAAGCAAGCTTTTTTAAGCCAACTCGAGTAAACATAACATCGTTCGAATATGGATTCTAGCACATCTGATTCAAGAAATTCGTTCTATTAGAGGTTTTACGGTATTCTAAAAATTTCGGAAGATTTAGAGTGTTGAAAAAGTGTTCCAGAATTCTTCAATTTTTCTGAAAATCTCAGGGTATACTAAATAAAGTTGGAGCTTCATTTTTGTAATTGACAACTTTTTCGCCAAGTTTCATTCTGATGAGATATGTCGTTTGTAACAAAAAGTSCCGAAACTTCAAAAGTAGCAGTGAAATGAGACTTCTGTATTCTTAAAACCGCTTATCTTGATTGGCTGGATTTATGCAAAAAAAAAGTTGTAAAATACAAAATTAAAGGAGGCCAGATACCAAAAAAAAAATTTTTCCTGATATTTTGCCTAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGTGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAACTGTCCCCCGAAATTTTTGCTGTCTCGCCTTTTTTAAAGCATTAGTTTTGTTTATTGTTGTAATGGAATATTTATAGATTTTGAATAACTCTCATAGGAACCGTGATGATTGAGCTTGAAGTTCAAAGTCAGGGGACCCTTCTATTTCAGGTTTTACGGTATTTTTCTTCTATTATTTTCAGACCACCATTTTTTTTATCACTAATCACTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>322 204 126 96 80 74 57 41</canonical_bands>
                <polymorphic_bands>322 204 183 96 80 74 41</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCGTTCTATTAGAGGTTTTACG</pcr_primer_p1>
		<pcr_primer_p2>TAAGCGGTTTTAAGAATACAGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCGTTCTATTAGAGGTTTTACGGTATTCTAAAAATTTCGGAAGATTTAGAGTGTTGAAAAAGTGTTCCAGAATTCTTCAATTTTTCTGAAAATCTCAGGGTATACTAAATAAAGTTGGAGCTTCATTTTTGTAATTGACAACTTTTTCGCCAAGTTTCATTCTGATGAGATATGTCGTTTGTAACAAAAAGTCCCGAAACTTCAAAAGTAGCAGTGAAATGAGACTTCTGTATTCTTAAAACCGCTTA</canonical_amplicon>
		<polymorphic_amplicon>TTCGTTCTATTAGAGGTTTTACGGTATTCTAAAAATTTCGGAAGATTTAGAGTGTTGAAAAAGTGTTCCAGAATTCTTCAATTTTTCTGAAAATCTCAGGGTATACTAAATAAAGTTGGAGCTTCATTTTTGTAATTGACAACTTTTTCGCCAAGTTTCATTCTGATGAGATATGTCGTTTGTAACAAAAAGTSCCGAAACTTCAAAAGTAGCAGTGAAATGAGACTTCTGTATTCTTAAAACCGCTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31196</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>126811</contig_pos>
        <strand></strand>
        <context>TGGCTGGATT[T/C]ATGCAAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAAATGAGACTTCTGTATTCTTAAAACCGCTTATCTTGATTGGCTGGATT</left_flank>
        <right_flank>ATGCAAAAAAAAAGTTGTAAAATACAAAATTAAAGGAGGCCAGATACCAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTTACAGTTTTAACTATTATCGAGATAGAGAGGTAAATTTGGAGATACTGTAAAACCTCTAATAGAACGANNNNNNNNNNAATGCCTTTGAAATATAATTGAGCAGACACAACGACATTTTAATCCGACATATGATCAATAATTTTCTCTTTATAAGCAAGCTTTTTTAAGCCAACTCGAGTAAACATAACATCGTTCGAATATGGATTCTAGCACATCTGATTCAAGAAATTCGTTCTATTAGAGGTTTTACGGTATTCTAAAAATTTCGGAAGATTTAGAGTGTTGAAAAAGTGTTCCAGAATTCTTCAATTTTTCTGAAAATCTCAGGGTATACTAAATAAAGTTGGAGCTTCATTTTTGTAATTGACAACTTTTTCGCCAAGTTTCATTCTGATGAGATATGTCGTTTGTAACAAAAAGTCCCGAAACTTCAAAAGTAGCAGTGAAATGAGACTTCTGTATTCTTAAAACCGCTTATCTTGATTGGCTGGATTTATGCAAAAAAAAAGTTGTAAAATACAAAATTAAAGGAGGCCAGATACCAAAAAAAAAATTTTTCCTGATATTTTGCCTAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGTGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAACTGTCCCCCGAAATTTTTGCTGTCTCGCCTTTTTTAAAGCATTAGTTTTGTTTATTGTTGTAATGGAATATTTATAGATTTTGAATAACTCTCATAGGAACCGTGATGATTGAGCTTGAAGTTCAAAGTCAGGGGACCCTTCTATTTCAGGTTTTACGGTATTTTTCTTCTATTATTTTCAGACCACCATTTTTTTTATCACTAATCACTTCTACAACGCAATCCGTGTATTTTATCTTGGTTTAGCGTTTTTGGTGGCTTACTTCATTTTTGAAATTAAATATTT</canonical>
            <polymorphic>GGTTTACAGTTTTAACTATTATCGAGATAGAGAGGTAAATTTGGAGATACTGTAAAACCTCTAATAGAACGANNNNNNNNNNAATGCCTTTGAAATATAATTGAGCAGACACAACGACATTTTAATCCGACATATGATCAATAATTTTCTCTTTATAAGCAAGCTTTTTTAAGCCAACTCGAGTAAACATAACATCGTTCGAATATGGATTCTAGCACATCTGATTCAAGAAATTCGTTCTATTAGAGGTTTTACGGTATTCTAAAAATTTCGGAAGATTTAGAGTGTTGAAAAAGTGTTCCAGAATTCTTCAATTTTTCTGAAAATCTCAGGGTATACTAAATAAAGTTGGAGCTTCATTTTTGTAATTGACAACTTTTTCGCCAAGTTTCATTCTGATGAGATATGTCGTTTGTAACAAAAAGTCCCGAAACTTCAAAAGTAGCAGTGAAATGAGACTTCTGTATTCTTAAAACCGCTTATCTTGATTGGCTGGATTYATGCAAAAAAAAAGTTGTAAAATACAAAATTAAAGGAGGCCAGATACCAAAAAAAAAATTTTTCCTGATATTTTGCCTAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGTGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAACTGTCCCCCGAAATTTTTGCTGTCTCGCCTTTTTTAAAGCATTAGTTTTGTTTATTGTTGTAATGGAATATTTATAGATTTTGAATAACTCTCATAGGAACCGTGATGATTGAGCTTGAAGTTCAAAGTCAGGGGACCCTTCTATTTCAGGTTTTACGGTATTTTTCTTCTATTATTTTCAGACCACCATTTTTTTTATCACTAATCACTTCTACAACGCAATCCGTGTATTTTATCTTGGTTTAGCGTTTTTGGTGGCTTACTTCATTTTTGAAATTAAATATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTTCAAAAGTAGCAGTGAAA</pcr_primer_p1>
		<pcr_primer_p2>GGTTCTCTAGGCAAAATATCAG</pcr_primer_p2>
		<pcr_amplicon_size>156</pcr_amplicon_size>
		<canonical_amplicon>AAACTTCAAAAGTAGCAGTGAAATGAGACTTCTGTATTCTTAAAACCGCTTATCTTGATTGGCTGGATTTATGCAAAAAAAAAGTTGTAAAATACAAAATTAAAGGAGGCCAGATACCAAAAAAAAAATTTTTCCTGATATTTTGCCTAGAGAACC</canonical_amplicon>
		<polymorphic_amplicon>AAACTTCAAAAGTAGCAGTGAAATGAGACTTCTGTATTCTTAAAACCGCTTATCTTGATTGGCTGGATTYATGCAAAAAAAAAGTTGTAAAATACAAAATTAAAGGAGGCCAGATACCAAAAAAAAAATTTTTCCTGATATTTTGCCTAGAGAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31197</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>127056</contig_pos>
        <strand>-</strand>
        <context>TGTCTCGCCT[A/G]RTTTAAAGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCGCGATTTCGTCCCCCGAACTGTCCCCCGAAATTTTTGCTGTCTCGCCT</left_flank>
        <right_flank>TTTTAAAGCATTAGTTTTGTTTATTGTTGTAATGGAATATTTATAGATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGTTTTACGGTATTCTAAAAATTTCGGAAGATTTAGAGTGTTGAAAAAGTGTTCCAGAATTCTTCAATTTTTCTGAAAATCTCAGGGTATACTAAATAAAGTTGGAGCTTCATTTTTGTAATTGACAACTTTTTCGCCAAGTTTCATTCTGATGAGATATGTCGTTTGTAACAAAAAGTCCCGAAACTTCAAAAGTAGCAGTGAAATGAGACTTCTGTATTCTTAAAACCGCTTATCTTGATTGGCTGGATTTATGCAAAAAAAAAGTTGTAAAATACAAAATTAAAGGAGGCCAGATACCAAAAAAAAAATTTTTCCTGATATTTTGCCTAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGTGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAACTGTCCCCCGAAATTTTTGCTGTCTCGCCTTTTTTAAAGCATTAGTTTTGTTTATTGTTGTAATGGAATATTTATAGATTTTGAATAACTCTCATAGGAACCGTGATGATTGAGCTTGAAGTTCAAAGTCAGGGGACCCTTCTATTTCAGGTTTTACGGTATTTTTCTTCTATTATTTTCAGACCACCATTTTTTTTATCACTAATCACTTCTACAACGCAATCCGTGTATTTTATCTTGGTTTAGCGTTTTTGGTGGCTTACTTCATTTTTGAAATTAAATATTTCACTTTGGAGCAAAAGTCATTTTTTTGAAATTTTATAAATCTAAAATTCAATTTTCAGATTTGATCATTCTTTCGTTCCGACTGATCTTATTGTTTTGACTCTATTTGGAATTTTACTCGTTATTTTCGTACACACTCATCATTTCATTTTGTCCATTTTGGCGATTCAAAGATTTTACCTTTACTTTTCCTGGAATTCCGAAAGTTTCAAAGACTCGACTTGGTTTTTAAAATGGGTCTATTTA</canonical>
            <polymorphic>GAGGTTTTACGGTATTCTAAAAATTTCGGAAGATTTAGAGTGTTGAAAAAGTGTTCCAGAATTCTTCAATTTTTCTGAAAATCTCAGGGTATACTAAATAAAGTTGGAGCTTCATTTTTGTAATTGACAACTTTTTCGCCAAGTTTCATTCTGATGAGATATGTCGTTTGTAACAAAAAGTCCCGAAACTTCAAAAGTAGCAGTGAAATGAGACTTCTGTATTCTTAAAACCGCTTATCTTGATTGGCTGGATTTATGCAAAAAAAAAGTTGTAAAATACAAAATTAAAGGAGGCCAGATACCAAAAAAAAAATTTTTCCTGATATTTTGCCTAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGTGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAACTGTCCCCCGAAATTTTTGCTGTCTCGCCTRTTTTAAAGCATTAGTTTTGTTTATTGTTGTAATGGAATATTTATAGATTTTGAATAACTCTCATAGGAACCGTGATGATTGAGCTTGAAGTTCAAAGTCAGGGGACCCTTCTATTTCAGGTTTTACGGTATTTTTCTTCTATTATTTTCAGACCACCATTTTTTTTATCACTAATCACTTCTACAACGCAATCCGTGTATTTTATCTTGGTTTAGCGTTTTTGGTGGCTTACTTCATTTTTGAAATTAAATATTTCACTTTGGAGCAAAAGTCATTTTTTTGAAATTTTATAAATCTAAAATTCAATTTTCAGATTTGATCATTCTTTCGTTCCGACTGATCTTATTGTTTTGACTCTATTTGGAATTTTACTCGTTATTTTCGTACACACTCATCATTTCATTTTGTCCATTTTGGCGATTCAAAGATTTTACCTTTACTTTTCCTGGAATTCCGAAAGTTTCAAAGACTCGACTTGGTTTTTAAAATGGGTCTATTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGACCGATGGTCTACATAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATGGTGGTCTGAAAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAACTGTCCCCCGAAATTTTTGCTGTCTCGCCTTTTTTAAAGCATTAGTTTTGTTTATTGTTGTAATGGAATATTTATAGATTTTGAATAACTCTCATAGGAACCGTGATGATTGAGCTTGAAGTTCAAAGTCAGGGGACCCTTCTATTTCAGGTTTTACGGTATTTTTCTTCTATTATTTTCAGACCACCATTTTT</canonical_amplicon>
		<polymorphic_amplicon>ACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAACTGTCCCCCGAAATTTTTGCTGTCTCGCCTRTTTTAAAGCATTAGTTTTGTTTATTGTTGTAATGGAATATTTATAGATTTTGAATAACTCTCATAGGAACCGTGATGATTGAGCTTGAAGTTCAAAGTCAGGGGACCCTTCTATTTCAGGTTTTACGGTATTTTTCTTCTATTATTTTCAGACCACCATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31198</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>127057</contig_pos>
        <strand>-</strand>
        <context>GTCTCGCCTR[A/G]TTTAAAGCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCGATTTCGTCCCCCGAACTGTCCCCCGAAATTTTTGCTGTCTCGCCTT</left_flank>
        <right_flank>TTTAAAGCATTAGTTTTGTTTATTGTTGTAATGGAATATTTATAGATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTTTTACGGTATTCTAAAAATTTCGGAAGATTTAGAGTGTTGAAAAAGTGTTCCAGAATTCTTCAATTTTTCTGAAAATCTCAGGGTATACTAAATAAAGTTGGAGCTTCATTTTTGTAATTGACAACTTTTTCGCCAAGTTTCATTCTGATGAGATATGTCGTTTGTAACAAAAAGTCCCGAAACTTCAAAAGTAGCAGTGAAATGAGACTTCTGTATTCTTAAAACCGCTTATCTTGATTGGCTGGATTTATGCAAAAAAAAAGTTGTAAAATACAAAATTAAAGGAGGCCAGATACCAAAAAAAAAATTTTTCCTGATATTTTGCCTAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGTGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAACTGTCCCCCGAAATTTTTGCTGTCTCGCCTTTTTTAAAGCATTAGTTTTGTTTATTGTTGTAATGGAATATTTATAGATTTTGAATAACTCTCATAGGAACCGTGATGATTGAGCTTGAAGTTCAAAGTCAGGGGACCCTTCTATTTCAGGTTTTACGGTATTTTTCTTCTATTATTTTCAGACCACCATTTTTTTTATCACTAATCACTTCTACAACGCAATCCGTGTATTTTATCTTGGTTTAGCGTTTTTGGTGGCTTACTTCATTTTTGAAATTAAATATTTCACTTTGGAGCAAAAGTCATTTTTTTGAAATTTTATAAATCTAAAATTCAATTTTCAGATTTGATCATTCTTTCGTTCCGACTGATCTTATTGTTTTGACTCTATTTGGAATTTTACTCGTTATTTTCGTACACACTCATCATTTCATTTTGTCCATTTTGGCGATTCAAAGATTTTACCTTTACTTTTCCTGGAATTCCGAAAGTTTCAAAGACTCGACTTGGTTTTTAAAATGGGTCTATTTAG</canonical>
            <polymorphic>AGGTTTTACGGTATTCTAAAAATTTCGGAAGATTTAGAGTGTTGAAAAAGTGTTCCAGAATTCTTCAATTTTTCTGAAAATCTCAGGGTATACTAAATAAAGTTGGAGCTTCATTTTTGTAATTGACAACTTTTTCGCCAAGTTTCATTCTGATGAGATATGTCGTTTGTAACAAAAAGTCCCGAAACTTCAAAAGTAGCAGTGAAATGAGACTTCTGTATTCTTAAAACCGCTTATCTTGATTGGCTGGATTTATGCAAAAAAAAAGTTGTAAAATACAAAATTAAAGGAGGCCAGATACCAAAAAAAAAATTTTTCCTGATATTTTGCCTAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGTGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAACTGTCCCCCGAAATTTTTGCTGTCTCGCCTTRTTTAAAGCATTAGTTTTGTTTATTGTTGTAATGGAATATTTATAGATTTTGAATAACTCTCATAGGAACCGTGATGATTGAGCTTGAAGTTCAAAGTCAGGGGACCCTTCTATTTCAGGTTTTACGGTATTTTTCTTCTATTATTTTCAGACCACCATTTTTTTTATCACTAATCACTTCTACAACGCAATCCGTGTATTTTATCTTGGTTTAGCGTTTTTGGTGGCTTACTTCATTTTTGAAATTAAATATTTCACTTTGGAGCAAAAGTCATTTTTTTGAAATTTTATAAATCTAAAATTCAATTTTCAGATTTGATCATTCTTTCGTTCCGACTGATCTTATTGTTTTGACTCTATTTGGAATTTTACTCGTTATTTTCGTACACACTCATCATTTCATTTTGTCCATTTTGGCGATTCAAAGATTTTACCTTTACTTTTCCTGGAATTCCGAAAGTTTCAAAGACTCGACTTGGTTTTTAAAATGGGTCTATTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGACCGATGGTCTACATAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATGGTGGTCTGAAAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAACTGTCCCCCGAAATTTTTGCTGTCTCGCCTTTTTTAAAGCATTAGTTTTGTTTATTGTTGTAATGGAATATTTATAGATTTTGAATAACTCTCATAGGAACCGTGATGATTGAGCTTGAAGTTCAAAGTCAGGGGACCCTTCTATTTCAGGTTTTACGGTATTTTTCTTCTATTATTTTCAGACCACCATTTTT</canonical_amplicon>
		<polymorphic_amplicon>ACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAACTGTCCCCCGAAATTTTTGCTGTCTCGCCTTRTTTAAAGCATTAGTTTTGTTTATTGTTGTAATGGAATATTTATAGATTTTGAATAACTCTCATAGGAACCGTGATGATTGAGCTTGAAGTTCAAAGTCAGGGGACCCTTCTATTTCAGGTTTTACGGTATTTTTCTTCTATTATTTTCAGACCACCATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31199</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>127093</contig_pos>
        <strand>-</strand>
        <context>TTGTAATGGA[C/T]TATTTATAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCTGTCTCGCCTTTTTTAAAGCATTAGTTTTGTTTATTGTTGTAATGGA</left_flank>
        <right_flank>TATTTATAGATTTTGAATAACTCTCATAGGAACCGTGATGATTGAGCTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGTGTTGAAAAAGTGTTCCAGAATTCTTCAATTTTTCTGAAAATCTCAGGGTATACTAAATAAAGTTGGAGCTTCATTTTTGTAATTGACAACTTTTTCGCCAAGTTTCATTCTGATGAGATATGTCGTTTGTAACAAAAAGTCCCGAAACTTCAAAAGTAGCAGTGAAATGAGACTTCTGTATTCTTAAAACCGCTTATCTTGATTGGCTGGATTTATGCAAAAAAAAAGTTGTAAAATACAAAATTAAAGGAGGCCAGATACCAAAAAAAAAATTTTTCCTGATATTTTGCCTAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGTGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAACTGTCCCCCGAAATTTTTGCTGTCTCGCCTTTTTTAAAGCATTAGTTTTGTTTATTGTTGTAATGGAATATTTATAGATTTTGAATAACTCTCATAGGAACCGTGATGATTGAGCTTGAAGTTCAAAGTCAGGGGACCCTTCTATTTCAGGTTTTACGGTATTTTTCTTCTATTATTTTCAGACCACCATTTTTTTTATCACTAATCACTTCTACAACGCAATCCGTGTATTTTATCTTGGTTTAGCGTTTTTGGTGGCTTACTTCATTTTTGAAATTAAATATTTCACTTTGGAGCAAAAGTCATTTTTTTGAAATTTTATAAATCTAAAATTCAATTTTCAGATTTGATCATTCTTTCGTTCCGACTGATCTTATTGTTTTGACTCTATTTGGAATTTTACTCGTTATTTTCGTACACACTCATCATTTCATTTTGTCCATTTTGGCGATTCAAAGATTTTACCTTTACTTTTCCTGGAATTCCGAAAGTTTCAAAGACTCGACTTGGTTTTTAAAATGGGTCTATTTAGTTTTCTATGGCGCTCATACTCTATTCTTTATTTCTG</canonical>
            <polymorphic>GAGTGTTGAAAAAGTGTTCCAGAATTCTTCAATTTTTCTGAAAATCTCAGGGTATACTAAATAAAGTTGGAGCTTCATTTTTGTAATTGACAACTTTTTCGCCAAGTTTCATTCTGATGAGATATGTCGTTTGTAACAAAAAGTCCCGAAACTTCAAAAGTAGCAGTGAAATGAGACTTCTGTATTCTTAAAACCGCTTATCTTGATTGGCTGGATTTATGCAAAAAAAAAGTTGTAAAATACAAAATTAAAGGAGGCCAGATACCAAAAAAAAAATTTTTCCTGATATTTTGCCTAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGTGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAACTGTCCCCCGAAATTTTTGCTGTCTCGCCTTTTTTAAAGCATTAGTTTTGTTTATTGTTGTAATGGAYTATTTATAGATTTTGAATAACTCTCATAGGAACCGTGATGATTGAGCTTGAAGTTCAAAGTCAGGGGACCCTTCTATTTCAGGTTTTACGGTATTTTTCTTCTATTATTTTCAGACCACCATTTTTTTTATCACTAATCACTTCTACAACGCAATCCGTGTATTTTATCTTGGTTTAGCGTTTTTGGTGGCTTACTTCATTTTTGAAATTAAATATTTCACTTTGGAGCAAAAGTCATTTTTTTGAAATTTTATAAATCTAAAATTCAATTTTCAGATTTGATCATTCTTTCGTTCCGACTGATCTTATTGTTTTGACTCTATTTGGAATTTTACTCGTTATTTTCGTACACACTCATCATTTCATTTTGTCCATTTTGGCGATTCAAAGATTTTACCTTTACTTTTCCTGGAATTCCGAAAGTTTCAAAGACTCGACTTGGTTTTTAAAATGGGTCTATTTAGTTTTCTATGGCGCTCATACTCTATTCTTTATTTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 286 213</canonical_bands>
                <polymorphic_bands>714 286</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGACCGATGGTCTACATAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATGGTGGTCTGAAAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAACTGTCCCCCGAAATTTTTGCTGTCTCGCCTTTTTTAAAGCATTAGTTTTGTTTATTGTTGTAATGGAATATTTATAGATTTTGAATAACTCTCATAGGAACCGTGATGATTGAGCTTGAAGTTCAAAGTCAGGGGACCCTTCTATTTCAGGTTTTACGGTATTTTTCTTCTATTATTTTCAGACCACCATTTTT</canonical_amplicon>
		<polymorphic_amplicon>ACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAACTGTCCCCCGAAATTTTTGCTGTCTCGCCTTTTTTAAAGCATTAGTTTTGTTTATTGTTGTAATGGAYTATTTATAGATTTTGAATAACTCTCATAGGAACCGTGATGATTGAGCTTGAAGTTCAAAGTCAGGGGACCCTTCTATTTCAGGTTTTACGGTATTTTTCTTCTATTATTTTCAGACCACCATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31200</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>127367</contig_pos>
        <strand></strand>
        <context>ATTCAATTTT[C/T]AGATTTGATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGAGCAAAAGTCATTTTTTTGAAATTTTATAAATCTAAAATTCAATTTT</left_flank>
        <right_flank>AGATTTGATCATTCTTTCGTTCCGACTGATCTTATTGTTTTGACTCTATT</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTTCCTGATATTTTGCCTAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGTGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAACTGTCCCCCGAAATTTTTGCTGTCTCGCCTTTTTTAAAGCATTAGTTTTGTTTATTGTTGTAATGGAATATTTATAGATTTTGAATAACTCTCATAGGAACCGTGATGATTGAGCTTGAAGTTCAAAGTCAGGGGACCCTTCTATTTCAGGTTTTACGGTATTTTTCTTCTATTATTTTCAGACCACCATTTTTTTTATCACTAATCACTTCTACAACGCAATCCGTGTATTTTATCTTGGTTTAGCGTTTTTGGTGGCTTACTTCATTTTTGAAATTAAATATTTCACTTTGGAGCAAAAGTCATTTTTTTGAAATTTTATAAATCTAAAATTCAATTTTCAGATTTGATCATTCTTTCGTTCCGACTGATCTTATTGTTTTGACTCTATTTGGAATTTTACTCGTTATTTTCGTACACACTCATCATTTCATTTTGTCCATTTTGGCGATTCAAAGATTTTACCTTTACTTTTCCTGGAATTCCGAAAGTTTCAAAGACTCGACTTGGTTTTTAAAATGGGTCTATTTAGTTTTCTATGGCGCTCATACTCTATTCTTTATTTCTGTAAAATTAATGTCGGAAAATAGTCAAGCATTCGTCTCAAAAGTGTACTCCATGGCTTATCCGGTTGGTCAAAATCGTTTTGATAAATATATTTTTTTTCAAAACAGATTTATTACATTTCCCTGAACATTTTGTTATTTTCCGCCGCCTTATTATATATTCCAATATTTTTGAGTGTTCGAAAGCTGGAACATTTAATTTCAGCAAAATTTTATAAACCACATAAATACATTTTAAAGCAAACAAAGTTAATTTTGGCATTTAAAACTGTTAGT</canonical>
            <polymorphic>AATTTTTCCTGATATTTTGCCTAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGTGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGCCTGACGACCGATGGTCTACATAAGCGCGGCGCGATTTCGTCCCCCGAACTGTCCCCCGAAATTTTTGCTGTCTCGCCTTTTTTAAAGCATTAGTTTTGTTTATTGTTGTAATGGAATATTTATAGATTTTGAATAACTCTCATAGGAACCGTGATGATTGAGCTTGAAGTTCAAAGTCAGGGGACCCTTCTATTTCAGGTTTTACGGTATTTTTCTTCTATTATTTTCAGACCACCATTTTTTTTATCACTAATCACTTCTACAACGCAATCCGTGTATTTTATCTTGGTTTAGCGTTTTTGGTGGCTTACTTCATTTTTGAAATTAAATATTTCACTTTGGAGCAAAAGTCATTTTTTTGAAATTTTATAAATCTAAAATTCAATTTTYAGATTTGATCATTCTTTCGTTCCGACTGATCTTATTGTTTTGACTCTATTTGGAATTTTACTCGTTATTTTCGTACACACTCATCATTTCATTTTGTCCATTTTGGCGATTCAAAGATTTTACCTTTACTTTTCCTGGAATTCCGAAAGTTTCAAAGACTCGACTTGGTTTTTAAAATGGGTCTATTTAGTTTTCTATGGCGCTCATACTCTATTCTTTATTTCTGTAAAATTAATGTCGGAAAATAGTCAAGCATTCGTCTCAAAAGTGTACTCCATGGCTTATCCGGTTGGTCAAAATCGTTTTGATAAATATATTTTTTTTCAAAACAGATTTATTACATTTCCCTGAACATTTTGTTATTTTCCGCCGCCTTATTATATATTCCAATATTTTTGAGTGTTCGAAAGCTGGAACATTTAATTTCAGCAAAATTTTATAAACCACATAAATACATTTTAAAGCAAACAAAGTTAATTTTGGCATTTAAAACTGTTAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>339 260 162 121 96 22</canonical_bands>
                <polymorphic_bands>339 260 184 121 96</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTATTTTCAGACCACCATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGTGTACGAAAATAACGAGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTATTTTCAGACCACCATTTTTTTTATCACTAATCACTTCTACAACGCAATCCGTGTATTTTATCTTGGTTTAGCGTTTTTGGTGGCTTACTTCATTTTTGAAATTAAATATTTCACTTTGGAGCAAAAGTCATTTTTTTGAAATTTTATAAATCTAAAATTCAATTTTCAGATTTGATCATTCTTTCGTTCCGACTGATCTTATTGTTTTGACTCTATTTGGAATTTTACTCGTTATTTTCGTACACA</canonical_amplicon>
		<polymorphic_amplicon>ATTATTTTCAGACCACCATTTTTTTTATCACTAATCACTTCTACAACGCAATCCGTGTATTTTATCTTGGTTTAGCGTTTTTGGTGGCTTACTTCATTTTTGAAATTAAATATTTCACTTTGGAGCAAAAGTCATTTTTTTGAAATTTTATAAATCTAAAATTCAATTTTYAGATTTGATCATTCTTTCGTTCCGACTGATCTTATTGTTTTGACTCTATTTGGAATTTTACTCGTTATTTTCGTACACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31201</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>127501</contig_pos>
        <strand>-</strand>
        <context>CTTTACTTTT[A/G/C/T]CTGGAATTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G/C/T</alleles>
        <left_flank>TCATTTCATTTTGTCCATTTTGGCGATTCAAAGATTTTACCTTTACTTTT</left_flank>
        <right_flank>CTGGAATTCCGAAAGTTTCAAAGACTCGACTTGGTTTTTAAAATGGGTCT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCGGCGCGATTTCGTCCCCCGAACTGTCCCCCGAAATTTTTGCTGTCTCGCCTTTTTTAAAGCATTAGTTTTGTTTATTGTTGTAATGGAATATTTATAGATTTTGAATAACTCTCATAGGAACCGTGATGATTGAGCTTGAAGTTCAAAGTCAGGGGACCCTTCTATTTCAGGTTTTACGGTATTTTTCTTCTATTATTTTCAGACCACCATTTTTTTTATCACTAATCACTTCTACAACGCAATCCGTGTATTTTATCTTGGTTTAGCGTTTTTGGTGGCTTACTTCATTTTTGAAATTAAATATTTCACTTTGGAGCAAAAGTCATTTTTTTGAAATTTTATAAATCTAAAATTCAATTTTCAGATTTGATCATTCTTTCGTTCCGACTGATCTTATTGTTTTGACTCTATTTGGAATTTTACTCGTTATTTTCGTACACACTCATCATTTCATTTTGTCCATTTTGGCGATTCAAAGATTTTACCTTTACTTTTCCTGGAATTCCGAAAGTTTCAAAGACTCGACTTGGTTTTTAAAATGGGTCTATTTAGTTTTCTATGGCGCTCATACTCTATTCTTTATTTCTGTAAAATTAATGTCGGAAAATAGTCAAGCATTCGTCTCAAAAGTGTACTCCATGGCTTATCCGGTTGGTCAAAATCGTTTTGATAAATATATTTTTTTTCAAAACAGATTTATTACATTTCCCTGAACATTTTGTTATTTTCCGCCGCCTTATTATATATTCCAATATTTTTGAGTGTTCGAAAGCTGGAACATTTAATTTCAGCAAAATTTTATAAACCACATAAATACATTTTAAAGCAAACAAAGTTAATTTTGGCATTTAAAACTGTTAGTTCAAACATAATTCAATTCAACTATCGAATAAAAGTTCCAGGCACATTTTCTAGTTTGGATTTTCTGGATCTATAGAAACGGAGACATCTTTTATGTAAGAACCAAAAAGGTTTGAAAATCCCAAAAAAAAACAC</canonical>
            <polymorphic>CGCGGCGCGATTTCGTCCCCCGAACTGTCCCCCGAAATTTTTGCTGTCTCGCCTTTTTTAAAGCATTAGTTTTGTTTATTGTTGTAATGGAATATTTATAGATTTTGAATAACTCTCATAGGAACCGTGATGATTGAGCTTGAAGTTCAAAGTCAGGGGACCCTTCTATTTCAGGTTTTACGGTATTTTTCTTCTATTATTTTCAGACCACCATTTTTTTTATCACTAATCACTTCTACAACGCAATCCGTGTATTTTATCTTGGTTTAGCGTTTTTGGTGGCTTACTTCATTTTTGAAATTAAATATTTCACTTTGGAGCAAAAGTCATTTTTTTGAAATTTTATAAATCTAAAATTCAATTTTCAGATTTGATCATTCTTTCGTTCCGACTGATCTTATTGTTTTGACTCTATTTGGAATTTTACTCGTTATTTTCGTACACACTCATCATTTCATTTTGTCCATTTTGGCGATTCAAAGATTTTACCTTTACTTTTRCTGGAATTCCGAAAGTTTCAAAGACTCGACTTGGTTTTTAAAATGGGTCTATTTAGTTTTCTATGGCGCTCATACTCTATTCTTTATTTCTGTAAAATTAATGTCGGAAAATAGTCAAGCATTCGTCTCAAAAGTGTACTCCATGGCTTATCCGGTTGGTCAAAATCGTTTTGATAAATATATTTTTTTTCAAAACAGATTTATTACATTTCCCTGAACATTTTGTTATTTTCCGCCGCCTTATTATATATTCCAATATTTTTGAGTGTTCGAAAGCTGGAACATTTAATTTCAGCAAAATTTTATAAACCACATAAATACATTTTAAAGCAAACAAAGTTAATTTTGGCATTTAAAACTGTTAGTTCAAACATAATTCAATTCAACTATCGAATAAAAGTTCCAGGCACATTTTCTAGTTTGGATTTTCTGGATCTATAGAAACGGAGACATCTTTTATGTAAGAACCAAAAAGGTTTGAAAATCCCAAAAAAAAACAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>501 403 96</canonical_bands>
                <polymorphic_bands>904 96</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>501 403 96</canonical_bands>
                <polymorphic_bands>904 96</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTTTGACTCTATTTGGAATTT</pcr_primer_p1>
		<pcr_primer_p2>ATAAGCCATGGAGTACACTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTTTTGACTCTATTTGGAATTTTACTCGTTATTTTCGTACACACTCATCATTTCATTTTGTCCATTTTGGCGATTCAAAGATTTTACCTTTACTTTTCCTGGAATTCCGAAAGTTTCAAAGACTCGACTTGGTTTTTAAAATGGGTCTATTTAGTTTTCTATGGCGCTCATACTCTATTCTTTATTTCTGTAAAATTAATGTCGGAAAATAGTCAAGCATTCGTCTCAAAAGTGTACTCCATGGCTTAT</canonical_amplicon>
		<polymorphic_amplicon>TGTTTTGACTCTATTTGGAATTTTACTCGTTATTTTCGTACACACTCATCATTTCATTTTGTCCATTTTGGCGATTCAAAGATTTTACCTTTACTTTTRCTGGAATTCCGAAAGTTTCAAAGACTCGACTTGGTTTTTAAAATGGGTCTATTTAGTTTTCTATGGCGCTCATACTCTATTCTTTATTTCTGTAAAATTAATGTCGGAAAATAGTCAAGCATTCGTCTCAAAAGTGTACTCCATGGCTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31202</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>127576</contig_pos>
        <strand>-</strand>
        <context>GGCGCTCATA[A/G/C/T]TCTATTCTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G/C/T</alleles>
        <left_flank>CTCGACTTGGTTTTTAAAATGGGTCTATTTAGTTTTCTATGGCGCTCATA</left_flank>
        <right_flank>TCTATTCTTTATTTCTGTAAAATTAATGTCGGAAAATAGTCAAGCATTCG</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATTGTTGTAATGGAATATTTATAGATTTTGAATAACTCTCATAGGAACCGTGATGATTGAGCTTGAAGTTCAAAGTCAGGGGACCCTTCTATTTCAGGTTTTACGGTATTTTTCTTCTATTATTTTCAGACCACCATTTTTTTTATCACTAATCACTTCTACAACGCAATCCGTGTATTTTATCTTGGTTTAGCGTTTTTGGTGGCTTACTTCATTTTTGAAATTAAATATTTCACTTTGGAGCAAAAGTCATTTTTTTGAAATTTTATAAATCTAAAATTCAATTTTCAGATTTGATCATTCTTTCGTTCCGACTGATCTTATTGTTTTGACTCTATTTGGAATTTTACTCGTTATTTTCGTACACACTCATCATTTCATTTTGTCCATTTTGGCGATTCAAAGATTTTACCTTTACTTTTCCTGGAATTCCGAAAGTTTCAAAGACTCGACTTGGTTTTTAAAATGGGTCTATTTAGTTTTCTATGGCGCTCATACTCTATTCTTTATTTCTGTAAAATTAATGTCGGAAAATAGTCAAGCATTCGTCTCAAAAGTGTACTCCATGGCTTATCCGGTTGGTCAAAATCGTTTTGATAAATATATTTTTTTTCAAAACAGATTTATTACATTTCCCTGAACATTTTGTTATTTTCCGCCGCCTTATTATATATTCCAATATTTTTGAGTGTTCGAAAGCTGGAACATTTAATTTCAGCAAAATTTTATAAACCACATAAATACATTTTAAAGCAAACAAAGTTAATTTTGGCATTTAAAACTGTTAGTTCAAACATAATTCAATTCAACTATCGAATAAAAGTTCCAGGCACATTTTCTAGTTTGGATTTTCTGGATCTATAGAAACGGAGACATCTTTTATGTAAGAACCAAAAAGGTTTGAAAATCCCAAAAAAAAACACTTTTTCAGTTATATTGCGTATTTTGTATAATTGATCTAATTTCTACTCCAGTCACAATTCAAATGTCCTATTTAT</canonical>
            <polymorphic>TTATTGTTGTAATGGAATATTTATAGATTTTGAATAACTCTCATAGGAACCGTGATGATTGAGCTTGAAGTTCAAAGTCAGGGGACCCTTCTATTTCAGGTTTTACGGTATTTTTCTTCTATTATTTTCAGACCACCATTTTTTTTATCACTAATCACTTCTACAACGCAATCCGTGTATTTTATCTTGGTTTAGCGTTTTTGGTGGCTTACTTCATTTTTGAAATTAAATATTTCACTTTGGAGCAAAAGTCATTTTTTTGAAATTTTATAAATCTAAAATTCAATTTTCAGATTTGATCATTCTTTCGTTCCGACTGATCTTATTGTTTTGACTCTATTTGGAATTTTACTCGTTATTTTCGTACACACTCATCATTTCATTTTGTCCATTTTGGCGATTCAAAGATTTTACCTTTACTTTTCCTGGAATTCCGAAAGTTTCAAAGACTCGACTTGGTTTTTAAAATGGGTCTATTTAGTTTTCTATGGCGCTCATARTCTATTCTTTATTTCTGTAAAATTAATGTCGGAAAATAGTCAAGCATTCGTCTCAAAAGTGTACTCCATGGCTTATCCGGTTGGTCAAAATCGTTTTGATAAATATATTTTTTTTCAAAACAGATTTATTACATTTCCCTGAACATTTTGTTATTTTCCGCCGCCTTATTATATATTCCAATATTTTTGAGTGTTCGAAAGCTGGAACATTTAATTTCAGCAAAATTTTATAAACCACATAAATACATTTTAAAGCAAACAAAGTTAATTTTGGCATTTAAAACTGTTAGTTCAAACATAATTCAATTCAACTATCGAATAAAAGTTCCAGGCACATTTTCTAGTTTGGATTTTCTGGATCTATAGAAACGGAGACATCTTTTATGTAAGAACCAAAAAGGTTTGAAAATCCCAAAAAAAAACACTTTTTCAGTTATATTGCGTATTTTGTATAATTGATCTAATTTCTACTCCAGTCACAATTCAAATGTCCTATTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTTGACTCTATTTGGAATTT</pcr_primer_p1>
		<pcr_primer_p2>ATAAGCCATGGAGTACACTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTTTTGACTCTATTTGGAATTTTACTCGTTATTTTCGTACACACTCATCATTTCATTTTGTCCATTTTGGCGATTCAAAGATTTTACCTTTACTTTTCCTGGAATTCCGAAAGTTTCAAAGACTCGACTTGGTTTTTAAAATGGGTCTATTTAGTTTTCTATGGCGCTCATACTCTATTCTTTATTTCTGTAAAATTAATGTCGGAAAATAGTCAAGCATTCGTCTCAAAAGTGTACTCCATGGCTTAT</canonical_amplicon>
		<polymorphic_amplicon>TGTTTTGACTCTATTTGGAATTTTACTCGTTATTTTCGTACACACTCATCATTTCATTTTGTCCATTTTGGCGATTCAAAGATTTTACCTTTACTTTTCCTGGAATTCCGAAAGTTTCAAAGACTCGACTTGGTTTTTAAAATGGGTCTATTTAGTTTTCTATGGCGCTCATARTCTATTCTTTATTTCTGTAAAATTAATGTCGGAAAATAGTCAAGCATTCGTCTCAAAAGTGTACTCCATGGCTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31203</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>127831</contig_pos>
        <strand>-</strand>
        <context>ACATTTTAAA[A/C/G/T]CAAACAAAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C/G/T</alleles>
        <left_flank>GAACATTTAATTTCAGCAAAATTTTATAAACCACATAAATACATTTTAAA</left_flank>
        <right_flank>CAAACAAAGTTAATTTTGGCATTTAAAACTGTTAGTTCAAACATAATTCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTGAAATTTTATAAATCTAAAATTCAATTTTCAGATTTGATCATTCTTTCGTTCCGACTGATCTTATTGTTTTGACTCTATTTGGAATTTTACTCGTTATTTTCGTACACACTCATCATTTCATTTTGTCCATTTTGGCGATTCAAAGATTTTACCTTTACTTTTCCTGGAATTCCGAAAGTTTCAAAGACTCGACTTGGTTTTTAAAATGGGTCTATTTAGTTTTCTATGGCGCTCATACTCTATTCTTTATTTCTGTAAAATTAATGTCGGAAAATAGTCAAGCATTCGTCTCAAAAGTGTACTCCATGGCTTATCCGGTTGGTCAAAATCGTTTTGATAAATATATTTTTTTTCAAAACAGATTTATTACATTTCCCTGAACATTTTGTTATTTTCCGCCGCCTTATTATATATTCCAATATTTTTGAGTGTTCGAAAGCTGGAACATTTAATTTCAGCAAAATTTTATAAACCACATAAATACATTTTAAAGCAAACAAAGTTAATTTTGGCATTTAAAACTGTTAGTTCAAACATAATTCAATTCAACTATCGAATAAAAGTTCCAGGCACATTTTCTAGTTTGGATTTTCTGGATCTATAGAAACGGAGACATCTTTTATGTAAGAACCAAAAAGGTTTGAAAATCCCAAAAAAAAACACTTTTTCAGTTATATTGCGTATTTTGTATAATTGATCTAATTTCTACTCCAGTCACAATTCAAATGTCCTATTTATACTGTAGCAAACGGAATGTTCAAACTTTGAAATTTATGTTTTCCAAAGTTTTCAATGGATTGAAAGTCGAGCCGTTTACTTTGCAAAATGAGGCAACGATAATGGCTCTTTCTTGATTAAAAATGAAAATTTAGATTTAGATTTTGTTTTTGAAAAGTGAAGATAAATGTTCCAGAATTTTTAATTTTATAATTCACAGCAATATTTGAAGATTATCATATTGAAATCACAAAAAAAGTGGTTCCAAAAATGTCA</canonical>
            <polymorphic>TTTTTTGAAATTTTATAAATCTAAAATTCAATTTTCAGATTTGATCATTCTTTCGTTCCGACTGATCTTATTGTTTTGACTCTATTTGGAATTTTACTCGTTATTTTCGTACACACTCATCATTTCATTTTGTCCATTTTGGCGATTCAAAGATTTTACCTTTACTTTTCCTGGAATTCCGAAAGTTTCAAAGACTCGACTTGGTTTTTAAAATGGGTCTATTTAGTTTTCTATGGCGCTCATACTCTATTCTTTATTTCTGTAAAATTAATGTCGGAAAATAGTCAAGCATTCGTCTCAAAAGTGTACTCCATGGCTTATCCGGTTGGTCAAAATCGTTTTGATAAATATATTTTTTTTCAAAACAGATTTATTACATTTCCCTGAACATTTTGTTATTTTCCGCCGCCTTATTATATATTCCAATATTTTTGAGTGTTCGAAAGCTGGAACATTTAATTTCAGCAAAATTTTATAAACCACATAAATACATTTTAAAMCAAACAAAGTTAATTTTGGCATTTAAAACTGTTAGTTCAAACATAATTCAATTCAACTATCGAATAAAAGTTCCAGGCACATTTTCTAGTTTGGATTTTCTGGATCTATAGAAACGGAGACATCTTTTATGTAAGAACCAAAAAGGTTTGAAAATCCCAAAAAAAAACACTTTTTCAGTTATATTGCGTATTTTGTATAATTGATCTAATTTCTACTCCAGTCACAATTCAAATGTCCTATTTATACTGTAGCAAACGGAATGTTCAAACTTTGAAATTTATGTTTTCCAAAGTTTTCAATGGATTGAAAGTCGAGCCGTTTACTTTGCAAAATGAGGCAACGATAATGGCTCTTTCTTGATTAAAAATGAAAATTTAGATTTAGATTTTGTTTTTGAAAAGTGAAGATAAATGTTCCAGAATTTTTAATTTTATAATTCACAGCAATATTTGAAGATTATCATATTGAAATCACAAAAAAAGTGGTTCCAAAAATGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGATTTATTACATTTCCCTGAA</pcr_primer_p1>
		<pcr_primer_p2>CTATAGATCCAGAAAATCCAAACT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAGATTTATTACATTTCCCTGAACATTTTGTTATTTTCCGCCGCCTTATTATATATTCCAATATTTTTGAGTGTTCGAAAGCTGGAACATTTAATTTCAGCAAAATTTTATAAACCACATAAATACATTTTAAAGCAAACAAAGTTAATTTTGGCATTTAAAACTGTTAGTTCAAACATAATTCAATTCAACTATCGAATAAAAGTTCCAGGCACATTTTCTAGTTTGGATTTTCTGGATCTATAG</canonical_amplicon>
		<polymorphic_amplicon>CAGATTTATTACATTTCCCTGAACATTTTGTTATTTTCCGCCGCCTTATTATATATTCCAATATTTTTGAGTGTTCGAAAGCTGGAACATTTAATTTCAGCAAAATTTTATAAACCACATAAATACATTTTAAAMCAAACAAAGTTAATTTTGGCATTTAAAACTGTTAGTTCAAACATAATTCAATTCAACTATCGAATAAAAGTTCCAGGCACATTTTCTAGTTTGGATTTTCTGGATCTATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31204</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>127880</contig_pos>
        <strand>-</strand>
        <context>AAACATAATT[C/G]AATTCAACTY</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGCAAACAAAGTTAATTTTGGCATTTAAAACTGTTAGTTCAAACATAATT</left_flank>
        <right_flank>AATTCAACTATCGAATAAAAGTTCCAGGCACATTTTCTAGTTTGGATTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTCGTTCCGACTGATCTTATTGTTTTGACTCTATTTGGAATTTTACTCGTTATTTTCGTACACACTCATCATTTCATTTTGTCCATTTTGGCGATTCAAAGATTTTACCTTTACTTTTCCTGGAATTCCGAAAGTTTCAAAGACTCGACTTGGTTTTTAAAATGGGTCTATTTAGTTTTCTATGGCGCTCATACTCTATTCTTTATTTCTGTAAAATTAATGTCGGAAAATAGTCAAGCATTCGTCTCAAAAGTGTACTCCATGGCTTATCCGGTTGGTCAAAATCGTTTTGATAAATATATTTTTTTTCAAAACAGATTTATTACATTTCCCTGAACATTTTGTTATTTTCCGCCGCCTTATTATATATTCCAATATTTTTGAGTGTTCGAAAGCTGGAACATTTAATTTCAGCAAAATTTTATAAACCACATAAATACATTTTAAAGCAAACAAAGTTAATTTTGGCATTTAAAACTGTTAGTTCAAACATAATTCAATTCAACTATCGAATAAAAGTTCCAGGCACATTTTCTAGTTTGGATTTTCTGGATCTATAGAAACGGAGACATCTTTTATGTAAGAACCAAAAAGGTTTGAAAATCCCAAAAAAAAACACTTTTTCAGTTATATTGCGTATTTTGTATAATTGATCTAATTTCTACTCCAGTCACAATTCAAATGTCCTATTTATACTGTAGCAAACGGAATGTTCAAACTTTGAAATTTATGTTTTCCAAAGTTTTCAATGGATTGAAAGTCGAGCCGTTTACTTTGCAAAATGAGGCAACGATAATGGCTCTTTCTTGATTAAAAATGAAAATTTAGATTTAGATTTTGTTTTTGAAAAGTGAAGATAAATGTTCCAGAATTTTTAATTTTATAATTCACAGCAATATTTGAAGATTATCATATTGAAATCACAAAAAAAGTGGTTCCAAAAATGTCACTAAAACCAGAAAATTTTGGAAAATTGAAGTCTAAAGGCTTAATTGTTT</canonical>
            <polymorphic>CTTTCGTTCCGACTGATCTTATTGTTTTGACTCTATTTGGAATTTTACTCGTTATTTTCGTACACACTCATCATTTCATTTTGTCCATTTTGGCGATTCAAAGATTTTACCTTTACTTTTCCTGGAATTCCGAAAGTTTCAAAGACTCGACTTGGTTTTTAAAATGGGTCTATTTAGTTTTCTATGGCGCTCATACTCTATTCTTTATTTCTGTAAAATTAATGTCGGAAAATAGTCAAGCATTCGTCTCAAAAGTGTACTCCATGGCTTATCCGGTTGGTCAAAATCGTTTTGATAAATATATTTTTTTTCAAAACAGATTTATTACATTTCCCTGAACATTTTGTTATTTTCCGCCGCCTTATTATATATTCCAATATTTTTGAGTGTTCGAAAGCTGGAACATTTAATTTCAGCAAAATTTTATAAACCACATAAATACATTTTAAAGCAAACAAAGTTAATTTTGGCATTTAAAACTGTTAGTTCAAACATAATTSAATTCAACTATCGAATAAAAGTTCCAGGCACATTTTCTAGTTTGGATTTTCTGGATCTATAGAAACGGAGACATCTTTTATGTAAGAACCAAAAAGGTTTGAAAATCCCAAAAAAAAACACTTTTTCAGTTATATTGCGTATTTTGTATAATTGATCTAATTTCTACTCCAGTCACAATTCAAATGTCCTATTTATACTGTAGCAAACGGAATGTTCAAACTTTGAAATTTATGTTTTCCAAAGTTTTCAATGGATTGAAAGTCGAGCCGTTTACTTTGCAAAATGAGGCAACGATAATGGCTCTTTCTTGATTAAAAATGAAAATTTAGATTTAGATTTTGTTTTTGAAAAGTGAAGATAAATGTTCCAGAATTTTTAATTTTATAATTCACAGCAATATTTGAAGATTATCATATTGAAATCACAAAAAAAGTGGTTCCAAAAATGTCACTAAAACCAGAAAATTTTGGAAAATTGAAGTCTAAAGGCTTAATTGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGATTTATTACATTTCCCTGAA</pcr_primer_p1>
		<pcr_primer_p2>CTATAGATCCAGAAAATCCAAACT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAGATTTATTACATTTCCCTGAACATTTTGTTATTTTCCGCCGCCTTATTATATATTCCAATATTTTTGAGTGTTCGAAAGCTGGAACATTTAATTTCAGCAAAATTTTATAAACCACATAAATACATTTTAAAGCAAACAAAGTTAATTTTGGCATTTAAAACTGTTAGTTCAAACATAATTCAATTCAACTATCGAATAAAAGTTCCAGGCACATTTTCTAGTTTGGATTTTCTGGATCTATAG</canonical_amplicon>
		<polymorphic_amplicon>CAGATTTATTACATTTCCCTGAACATTTTGTTATTTTCCGCCGCCTTATTATATATTCCAATATTTTTGAGTGTTCGAAAGCTGGAACATTTAATTTCAGCAAAATTTTATAAACCACATAAATACATTTTAAAGCAAACAAAGTTAATTTTGGCATTTAAAACTGTTAGTTCAAACATAATTSAATTCAACTATCGAATAAAAGTTCCAGGCACATTTTCTAGTTTGGATTTTCTGGATCTATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31205</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>127890</contig_pos>
        <strand>-</strand>
        <context>SAATTCAACT[C/T/A/G]TCGAATAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T/A/G</alleles>
        <left_flank>GTTAATTTTGGCATTTAAAACTGTTAGTTCAAACATAATTCAATTCAACT</left_flank>
        <right_flank>TCGAATAAAAGTTCCAGGCACATTTTCTAGTTTGGATTTTCTGGATCTAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTGATCTTATTGTTTTGACTCTATTTGGAATTTTACTCGTTATTTTCGTACACACTCATCATTTCATTTTGTCCATTTTGGCGATTCAAAGATTTTACCTTTACTTTTCCTGGAATTCCGAAAGTTTCAAAGACTCGACTTGGTTTTTAAAATGGGTCTATTTAGTTTTCTATGGCGCTCATACTCTATTCTTTATTTCTGTAAAATTAATGTCGGAAAATAGTCAAGCATTCGTCTCAAAAGTGTACTCCATGGCTTATCCGGTTGGTCAAAATCGTTTTGATAAATATATTTTTTTTCAAAACAGATTTATTACATTTCCCTGAACATTTTGTTATTTTCCGCCGCCTTATTATATATTCCAATATTTTTGAGTGTTCGAAAGCTGGAACATTTAATTTCAGCAAAATTTTATAAACCACATAAATACATTTTAAAGCAAACAAAGTTAATTTTGGCATTTAAAACTGTTAGTTCAAACATAATTCAATTCAACTATCGAATAAAAGTTCCAGGCACATTTTCTAGTTTGGATTTTCTGGATCTATAGAAACGGAGACATCTTTTATGTAAGAACCAAAAAGGTTTGAAAATCCCAAAAAAAAACACTTTTTCAGTTATATTGCGTATTTTGTATAATTGATCTAATTTCTACTCCAGTCACAATTCAAATGTCCTATTTATACTGTAGCAAACGGAATGTTCAAACTTTGAAATTTATGTTTTCCAAAGTTTTCAATGGATTGAAAGTCGAGCCGTTTACTTTGCAAAATGAGGCAACGATAATGGCTCTTTCTTGATTAAAAATGAAAATTTAGATTTAGATTTTGTTTTTGAAAAGTGAAGATAAATGTTCCAGAATTTTTAATTTTATAATTCACAGCAATATTTGAAGATTATCATATTGAAATCACAAAAAAAGTGGTTCCAAAAATGTCACTAAAACCAGAAAATTTTGGAAAATTGAAGTCTAAAGGCTTAATTGTTTTTTAAAATTT</canonical>
            <polymorphic>GACTGATCTTATTGTTTTGACTCTATTTGGAATTTTACTCGTTATTTTCGTACACACTCATCATTTCATTTTGTCCATTTTGGCGATTCAAAGATTTTACCTTTACTTTTCCTGGAATTCCGAAAGTTTCAAAGACTCGACTTGGTTTTTAAAATGGGTCTATTTAGTTTTCTATGGCGCTCATACTCTATTCTTTATTTCTGTAAAATTAATGTCGGAAAATAGTCAAGCATTCGTCTCAAAAGTGTACTCCATGGCTTATCCGGTTGGTCAAAATCGTTTTGATAAATATATTTTTTTTCAAAACAGATTTATTACATTTCCCTGAACATTTTGTTATTTTCCGCCGCCTTATTATATATTCCAATATTTTTGAGTGTTCGAAAGCTGGAACATTTAATTTCAGCAAAATTTTATAAACCACATAAATACATTTTAAAGCAAACAAAGTTAATTTTGGCATTTAAAACTGTTAGTTCAAACATAATTCAATTCAACTYTCGAATAAAAGTTCCAGGCACATTTTCTAGTTTGGATTTTCTGGATCTATAGAAACGGAGACATCTTTTATGTAAGAACCAAAAAGGTTTGAAAATCCCAAAAAAAAACACTTTTTCAGTTATATTGCGTATTTTGTATAATTGATCTAATTTCTACTCCAGTCACAATTCAAATGTCCTATTTATACTGTAGCAAACGGAATGTTCAAACTTTGAAATTTATGTTTTCCAAAGTTTTCAATGGATTGAAAGTCGAGCCGTTTACTTTGCAAAATGAGGCAACGATAATGGCTCTTTCTTGATTAAAAATGAAAATTTAGATTTAGATTTTGTTTTTGAAAAGTGAAGATAAATGTTCCAGAATTTTTAATTTTATAATTCACAGCAATATTTGAAGATTATCATATTGAAATCACAAAAAAAGTGGTTCCAAAAATGTCACTAAAACCAGAAAATTTTGGAAAATTGAAGTCTAAAGGCTTAATTGTTTTTTAAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAGCAAAATTTTATAAACCAC</pcr_primer_p1>
		<pcr_primer_p2>GATCAATTATACAAAATACGCAATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTCAGCAAAATTTTATAAACCACATAAATACATTTTAAAGCAAACAAAGTTAATTTTGGCATTTAAAACTGTTAGTTCAAACATAATTCAATTCAACTATCGAATAAAAGTTCCAGGCACATTTTCTAGTTTGGATTTTCTGGATCTATAGAAACGGAGACATCTTTTATGTAAGAACCAAAAAGGTTTGAAAATCCCAAAAAAAAACACTTTTTCAGTTATATTGCGTATTTTGTATAATTGATC</canonical_amplicon>
		<polymorphic_amplicon>TTCAGCAAAATTTTATAAACCACATAAATACATTTTAAAGCAAACAAAGTTAATTTTGGCATTTAAAACTGTTAGTTCAAACATAATTCAATTCAACTYTCGAATAAAAGTTCCAGGCACATTTTCTAGTTTGGATTTTCTGGATCTATAGAAACGGAGACATCTTTTATGTAAGAACCAAAAAGGTTTGAAAATCCCAAAAAAAAACACTTTTTCAGTTATATTGCGTATTTTGTATAATTGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31206</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>127901</contig_pos>
        <strand>-</strand>
        <context>TCGAATAAAA[C/T/G/A]TTCCAGGCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T/G/A</alleles>
        <left_flank>CATTTAAAACTGTTAGTTCAAACATAATTCAATTCAACTATCGAATAAAA</left_flank>
        <right_flank>TTCCAGGCACATTTTCTAGTTTGGATTTTCTGGATCTATAGAAACGGAGA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTTTGACTCTATTTGGAATTTTACTCGTTATTTTCGTACACACTCATCATTTCATTTTGTCCATTTTGGCGATTCAAAGATTTTACCTTTACTTTTCCTGGAATTCCGAAAGTTTCAAAGACTCGACTTGGTTTTTAAAATGGGTCTATTTAGTTTTCTATGGCGCTCATACTCTATTCTTTATTTCTGTAAAATTAATGTCGGAAAATAGTCAAGCATTCGTCTCAAAAGTGTACTCCATGGCTTATCCGGTTGGTCAAAATCGTTTTGATAAATATATTTTTTTTCAAAACAGATTTATTACATTTCCCTGAACATTTTGTTATTTTCCGCCGCCTTATTATATATTCCAATATTTTTGAGTGTTCGAAAGCTGGAACATTTAATTTCAGCAAAATTTTATAAACCACATAAATACATTTTAAAGCAAACAAAGTTAATTTTGGCATTTAAAACTGTTAGTTCAAACATAATTCAATTCAACTATCGAATAAAAGTTCCAGGCACATTTTCTAGTTTGGATTTTCTGGATCTATAGAAACGGAGACATCTTTTATGTAAGAACCAAAAAGGTTTGAAAATCCCAAAAAAAAACACTTTTTCAGTTATATTGCGTATTTTGTATAATTGATCTAATTTCTACTCCAGTCACAATTCAAATGTCCTATTTATACTGTAGCAAACGGAATGTTCAAACTTTGAAATTTATGTTTTCCAAAGTTTTCAATGGATTGAAAGTCGAGCCGTTTACTTTGCAAAATGAGGCAACGATAATGGCTCTTTCTTGATTAAAAATGAAAATTTAGATTTAGATTTTGTTTTTGAAAAGTGAAGATAAATGTTCCAGAATTTTTAATTTTATAATTCACAGCAATATTTGAAGATTATCATATTGAAATCACAAAAAAAGTGGTTCCAAAAATGTCACTAAAACCAGAAAATTTTGGAAAATTGAAGTCTAAAGGCTTAATTGTTTTTTAAAATTTCTTTCCGATTT</canonical>
            <polymorphic>TTGTTTTGACTCTATTTGGAATTTTACTCGTTATTTTCGTACACACTCATCATTTCATTTTGTCCATTTTGGCGATTCAAAGATTTTACCTTTACTTTTCCTGGAATTCCGAAAGTTTCAAAGACTCGACTTGGTTTTTAAAATGGGTCTATTTAGTTTTCTATGGCGCTCATACTCTATTCTTTATTTCTGTAAAATTAATGTCGGAAAATAGTCAAGCATTCGTCTCAAAAGTGTACTCCATGGCTTATCCGGTTGGTCAAAATCGTTTTGATAAATATATTTTTTTTCAAAACAGATTTATTACATTTCCCTGAACATTTTGTTATTTTCCGCCGCCTTATTATATATTCCAATATTTTTGAGTGTTCGAAAGCTGGAACATTTAATTTCAGCAAAATTTTATAAACCACATAAATACATTTTAAAGCAAACAAAGTTAATTTTGGCATTTAAAACTGTTAGTTCAAACATAATTCAATTCAACTATCGAATAAAAYTTCCAGGCACATTTTCTAGTTTGGATTTTCTGGATCTATAGAAACGGAGACATCTTTTATGTAAGAACCAAAAAGGTTTGAAAATCCCAAAAAAAAACACTTTTTCAGTTATATTGCGTATTTTGTATAATTGATCTAATTTCTACTCCAGTCACAATTCAAATGTCCTATTTATACTGTAGCAAACGGAATGTTCAAACTTTGAAATTTATGTTTTCCAAAGTTTTCAATGGATTGAAAGTCGAGCCGTTTACTTTGCAAAATGAGGCAACGATAATGGCTCTTTCTTGATTAAAAATGAAAATTTAGATTTAGATTTTGTTTTTGAAAAGTGAAGATAAATGTTCCAGAATTTTTAATTTTATAATTCACAGCAATATTTGAAGATTATCATATTGAAATCACAAAAAAAGTGGTTCCAAAAATGTCACTAAAACCAGAAAATTTTGGAAAATTGAAGTCTAAAGGCTTAATTGTTTTTTAAAATTTCTTTCCGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGCATTTAAAACTGTTAGTTC</pcr_primer_p1>
		<pcr_primer_p2>ACATTCCGTTTGCTACAGTATAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGGCATTTAAAACTGTTAGTTCAAACATAATTCAATTCAACTATCGAATAAAAGTTCCAGGCACATTTTCTAGTTTGGATTTTCTGGATCTATAGAAACGGAGACATCTTTTATGTAAGAACCAAAAAGGTTTGAAAATCCCAAAAAAAAACACTTTTTCAGTTATATTGCGTATTTTGTATAATTGATCTAATTTCTACTCCAGTCACAATTCAAATGTCCTATTTATACTGTAGCAAACGGAATGT</canonical_amplicon>
		<polymorphic_amplicon>TTGGCATTTAAAACTGTTAGTTCAAACATAATTCAATTCAACTATCGAATAAAAYTTCCAGGCACATTTTCTAGTTTGGATTTTCTGGATCTATAGAAACGGAGACATCTTTTATGTAAGAACCAAAAAGGTTTGAAAATCCCAAAAAAAAACACTTTTTCAGTTATATTGCGTATTTTGTATAATTGATCTAATTTCTACTCCAGTCACAATTCAAATGTCCTATTTATACTGTAGCAAACGGAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31207</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>127949</contig_pos>
        <strand>-</strand>
        <context>ATAGAAACGG[C/T]GACATSTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGTTCCAGGCACATTTTCTAGTTTGGATTTTCTGGATCTATAGAAACGG</left_flank>
        <right_flank>GACATCTTTTATGTAAGAACCAAAAAGGTTTGAAAATCCCAAAAAAAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCATTTCATTTTGTCCATTTTGGCGATTCAAAGATTTTACCTTTACTTTTCCTGGAATTCCGAAAGTTTCAAAGACTCGACTTGGTTTTTAAAATGGGTCTATTTAGTTTTCTATGGCGCTCATACTCTATTCTTTATTTCTGTAAAATTAATGTCGGAAAATAGTCAAGCATTCGTCTCAAAAGTGTACTCCATGGCTTATCCGGTTGGTCAAAATCGTTTTGATAAATATATTTTTTTTCAAAACAGATTTATTACATTTCCCTGAACATTTTGTTATTTTCCGCCGCCTTATTATATATTCCAATATTTTTGAGTGTTCGAAAGCTGGAACATTTAATTTCAGCAAAATTTTATAAACCACATAAATACATTTTAAAGCAAACAAAGTTAATTTTGGCATTTAAAACTGTTAGTTCAAACATAATTCAATTCAACTATCGAATAAAAGTTCCAGGCACATTTTCTAGTTTGGATTTTCTGGATCTATAGAAACGGAGACATCTTTTATGTAAGAACCAAAAAGGTTTGAAAATCCCAAAAAAAAACACTTTTTCAGTTATATTGCGTATTTTGTATAATTGATCTAATTTCTACTCCAGTCACAATTCAAATGTCCTATTTATACTGTAGCAAACGGAATGTTCAAACTTTGAAATTTATGTTTTCCAAAGTTTTCAATGGATTGAAAGTCGAGCCGTTTACTTTGCAAAATGAGGCAACGATAATGGCTCTTTCTTGATTAAAAATGAAAATTTAGATTTAGATTTTGTTTTTGAAAAGTGAAGATAAATGTTCCAGAATTTTTAATTTTATAATTCACAGCAATATTTGAAGATTATCATATTGAAATCACAAAAAAAGTGGTTCCAAAAATGTCACTAAAACCAGAAAATTTTGGAAAATTGAAGTCTAAAGGCTTAATTGTTTTTTAAAATTTCTTTCCGATTTCCGGATATTATTTGGTCCGTCAGACTTTAATTTTTTATTTGTAACCAG</canonical>
            <polymorphic>ATCATTTCATTTTGTCCATTTTGGCGATTCAAAGATTTTACCTTTACTTTTCCTGGAATTCCGAAAGTTTCAAAGACTCGACTTGGTTTTTAAAATGGGTCTATTTAGTTTTCTATGGCGCTCATACTCTATTCTTTATTTCTGTAAAATTAATGTCGGAAAATAGTCAAGCATTCGTCTCAAAAGTGTACTCCATGGCTTATCCGGTTGGTCAAAATCGTTTTGATAAATATATTTTTTTTCAAAACAGATTTATTACATTTCCCTGAACATTTTGTTATTTTCCGCCGCCTTATTATATATTCCAATATTTTTGAGTGTTCGAAAGCTGGAACATTTAATTTCAGCAAAATTTTATAAACCACATAAATACATTTTAAAGCAAACAAAGTTAATTTTGGCATTTAAAACTGTTAGTTCAAACATAATTCAATTCAACTATCGAATAAAAGTTCCAGGCACATTTTCTAGTTTGGATTTTCTGGATCTATAGAAACGGYGACATCTTTTATGTAAGAACCAAAAAGGTTTGAAAATCCCAAAAAAAAACACTTTTTCAGTTATATTGCGTATTTTGTATAATTGATCTAATTTCTACTCCAGTCACAATTCAAATGTCCTATTTATACTGTAGCAAACGGAATGTTCAAACTTTGAAATTTATGTTTTCCAAAGTTTTCAATGGATTGAAAGTCGAGCCGTTTACTTTGCAAAATGAGGCAACGATAATGGCTCTTTCTTGATTAAAAATGAAAATTTAGATTTAGATTTTGTTTTTGAAAAGTGAAGATAAATGTTCCAGAATTTTTAATTTTATAATTCACAGCAATATTTGAAGATTATCATATTGAAATCACAAAAAAAGTGGTTCCAAAAATGTCACTAAAACCAGAAAATTTTGGAAAATTGAAGTCTAAAGGCTTAATTGTTTTTTAAAATTTCTTTCCGATTTCCGGATATTATTTGGTCCGTCAGACTTTAATTTTTTATTTGTAACCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGCATTTAAAACTGTTAGTTC</pcr_primer_p1>
		<pcr_primer_p2>ACATTCCGTTTGCTACAGTATAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGGCATTTAAAACTGTTAGTTCAAACATAATTCAATTCAACTATCGAATAAAAGTTCCAGGCACATTTTCTAGTTTGGATTTTCTGGATCTATAGAAACGGAGACATCTTTTATGTAAGAACCAAAAAGGTTTGAAAATCCCAAAAAAAAACACTTTTTCAGTTATATTGCGTATTTTGTATAATTGATCTAATTTCTACTCCAGTCACAATTCAAATGTCCTATTTATACTGTAGCAAACGGAATGT</canonical_amplicon>
		<polymorphic_amplicon>TTGGCATTTAAAACTGTTAGTTCAAACATAATTCAATTCAACTATCGAATAAAAGTTCCAGGCACATTTTCTAGTTTGGATTTTCTGGATCTATAGAAACGGYGACATCTTTTATGTAAGAACCAAAAAGGTTTGAAAATCCCAAAAAAAAACACTTTTTCAGTTATATTGCGTATTTTGTATAATTGATCTAATTTCTACTCCAGTCACAATTCAAATGTCCTATTTATACTGTAGCAAACGGAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31208</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>127955</contig_pos>
        <strand>-</strand>
        <context>ACGGYGACAT[C/G]TTTTATGTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAGGCACATTTTCTAGTTTGGATTTTCTGGATCTATAGAAACGGAGACAT</left_flank>
        <right_flank>TTTTATGTAAGAACCAAAAAGGTTTGAAAATCCCAAAAAAAAACACTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATTTTGTCCATTTTGGCGATTCAAAGATTTTACCTTTACTTTTCCTGGAATTCCGAAAGTTTCAAAGACTCGACTTGGTTTTTAAAATGGGTCTATTTAGTTTTCTATGGCGCTCATACTCTATTCTTTATTTCTGTAAAATTAATGTCGGAAAATAGTCAAGCATTCGTCTCAAAAGTGTACTCCATGGCTTATCCGGTTGGTCAAAATCGTTTTGATAAATATATTTTTTTTCAAAACAGATTTATTACATTTCCCTGAACATTTTGTTATTTTCCGCCGCCTTATTATATATTCCAATATTTTTGAGTGTTCGAAAGCTGGAACATTTAATTTCAGCAAAATTTTATAAACCACATAAATACATTTTAAAGCAAACAAAGTTAATTTTGGCATTTAAAACTGTTAGTTCAAACATAATTCAATTCAACTATCGAATAAAAGTTCCAGGCACATTTTCTAGTTTGGATTTTCTGGATCTATAGAAACGGAGACATCTTTTATGTAAGAACCAAAAAGGTTTGAAAATCCCAAAAAAAAACACTTTTTCAGTTATATTGCGTATTTTGTATAATTGATCTAATTTCTACTCCAGTCACAATTCAAATGTCCTATTTATACTGTAGCAAACGGAATGTTCAAACTTTGAAATTTATGTTTTCCAAAGTTTTCAATGGATTGAAAGTCGAGCCGTTTACTTTGCAAAATGAGGCAACGATAATGGCTCTTTCTTGATTAAAAATGAAAATTTAGATTTAGATTTTGTTTTTGAAAAGTGAAGATAAATGTTCCAGAATTTTTAATTTTATAATTCACAGCAATATTTGAAGATTATCATATTGAAATCACAAAAAAAGTGGTTCCAAAAATGTCACTAAAACCAGAAAATTTTGGAAAATTGAAGTCTAAAGGCTTAATTGTTTTTTAAAATTTCTTTCCGATTTCCGGATATTATTTGGTCCGTCAGACTTTAATTTTTTATTTGTAACCAGCCTTCT</canonical>
            <polymorphic>TCATTTTGTCCATTTTGGCGATTCAAAGATTTTACCTTTACTTTTCCTGGAATTCCGAAAGTTTCAAAGACTCGACTTGGTTTTTAAAATGGGTCTATTTAGTTTTCTATGGCGCTCATACTCTATTCTTTATTTCTGTAAAATTAATGTCGGAAAATAGTCAAGCATTCGTCTCAAAAGTGTACTCCATGGCTTATCCGGTTGGTCAAAATCGTTTTGATAAATATATTTTTTTTCAAAACAGATTTATTACATTTCCCTGAACATTTTGTTATTTTCCGCCGCCTTATTATATATTCCAATATTTTTGAGTGTTCGAAAGCTGGAACATTTAATTTCAGCAAAATTTTATAAACCACATAAATACATTTTAAAGCAAACAAAGTTAATTTTGGCATTTAAAACTGTTAGTTCAAACATAATTCAATTCAACTATCGAATAAAAGTTCCAGGCACATTTTCTAGTTTGGATTTTCTGGATCTATAGAAACGGAGACATSTTTTATGTAAGAACCAAAAAGGTTTGAAAATCCCAAAAAAAAACACTTTTTCAGTTATATTGCGTATTTTGTATAATTGATCTAATTTCTACTCCAGTCACAATTCAAATGTCCTATTTATACTGTAGCAAACGGAATGTTCAAACTTTGAAATTTATGTTTTCCAAAGTTTTCAATGGATTGAAAGTCGAGCCGTTTACTTTGCAAAATGAGGCAACGATAATGGCTCTTTCTTGATTAAAAATGAAAATTTAGATTTAGATTTTGTTTTTGAAAAGTGAAGATAAATGTTCCAGAATTTTTAATTTTATAATTCACAGCAATATTTGAAGATTATCATATTGAAATCACAAAAAAAGTGGTTCCAAAAATGTCACTAAAACCAGAAAATTTTGGAAAATTGAAGTCTAAAGGCTTAATTGTTTTTTAAAATTTCTTTCCGATTTCCGGATATTATTTGGTCCGTCAGACTTTAATTTTTTATTTGTAACCAGCCTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGCATTTAAAACTGTTAGTTC</pcr_primer_p1>
		<pcr_primer_p2>ACATTCCGTTTGCTACAGTATAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGGCATTTAAAACTGTTAGTTCAAACATAATTCAATTCAACTATCGAATAAAAGTTCCAGGCACATTTTCTAGTTTGGATTTTCTGGATCTATAGAAACGGAGACATCTTTTATGTAAGAACCAAAAAGGTTTGAAAATCCCAAAAAAAAACACTTTTTCAGTTATATTGCGTATTTTGTATAATTGATCTAATTTCTACTCCAGTCACAATTCAAATGTCCTATTTATACTGTAGCAAACGGAATGT</canonical_amplicon>
		<polymorphic_amplicon>TTGGCATTTAAAACTGTTAGTTCAAACATAATTCAATTCAACTATCGAATAAAAGTTCCAGGCACATTTTCTAGTTTGGATTTTCTGGATCTATAGAAACGGAGACATSTTTTATGTAAGAACCAAAAAGGTTTGAAAATCCCAAAAAAAAACACTTTTTCAGTTATATTGCGTATTTTGTATAATTGATCTAATTTCTACTCCAGTCACAATTCAAATGTCCTATTTATACTGTAGCAAACGGAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31209</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>128663</contig_pos>
        <strand>-</strand>
        <context>CCTTTCATTT[G/T]AAAACCCAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGTGCGGAAGGCCGCGGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTT</left_flank>
        <right_flank>AAAACCCAAAACCGGACAGCCGGACACTAGGACCAACAGACGCGTCTAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAGGCAACGATAATGGCTCTTTCTTGATTAAAAATGAAAATTTAGATTTAGATTTTGTTTTTGAAAAGTGAAGATAAATGTTCCAGAATTTTTAATTTTATAATTCACAGCAATATTTGAAGATTATCATATTGAAATCACAAAAAAAGTGGTTCCAAAAATGTCACTAAAACCAGAAAATTTTGGAAAATTGAAGTCTAAAGGCTTAATTGTTTTTTAAAATTTCTTTCCGATTTCCGGATATTATTTGGTCCGTCAGACTTTAATTTTTTATTTGTAACCAGCCTTCTGTTTGCCGCGCCTCCGGCGCTTCACAATTCATTTTCAATTATTCGTCGCTCCACTCCTCACTTTTCAATTTTTCTTTATCACGCTGTAGAACATCTACGCCCTCCCTCCCCTCTCCTGGTGTGGGCCTCATGGCGCAGCTGTGTGCGTGCGCGGCTATTGTGCGGAAGGCCGCGGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTCAAAACCCAAAACCGGACAGCCGGACACTAGGACCAACAGACGCGTCTAGCGTTTTATATATAAGAAAGATGACGTCATTATACACTGGTTTACAGCTAGAGTCTACCTGGATTCTGAAAGCGCATACCGTAAACCCTCTAATTGAACGCCCGATCCTAACCGTCCAATTTGAACTCATATATCTCATTTCCGTAAAAGATATCAAAAAGTCAATTTTTAATATCTTTTATAGGAACCGAGATAAATCGGCTCAAAGTTAGGAAAGTAATACAAGTGAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATTCATTATTTTCTTCTA</canonical>
            <polymorphic>ATGAGGCAACGATAATGGCTCTTTCTTGATTAAAAATGAAAATTTAGATTTAGATTTTGTTTTTGAAAAGTGAAGATAAATGTTCCAGAATTTTTAATTTTATAATTCACAGCAATATTTGAAGATTATCATATTGAAATCACAAAAAAAGTGGTTCCAAAAATGTCACTAAAACCAGAAAATTTTGGAAAATTGAAGTCTAAAGGCTTAATTGTTTTTTAAAATTTCTTTCCGATTTCCGGATATTATTTGGTCCGTCAGACTTTAATTTTTTATTTGTAACCAGCCTTCTGTTTGCCGCGCCTCCGGCGCTTCACAATTCATTTTCAATTATTCGTCGCTCCACTCCTCACTTTTCAATTTTTCTTTATCACGCTGTAGAACATCTACGCCCTCCCTCCCCTCTCCTGGTGTGGGCCTCATGGCGCAGCTGTGTGCGTGCGCGGCTATTGTGCGGAAGGCCGCGGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTKAAAACCCAAAACCGGACAGCCGGACACTAGGACCAACAGACGCGTCTAGCGTTTTATATATAAGAAAGATGACGTCATTATACACTGGTTTACAGCTAGAGTCTACCTGGATTCTGAAAGCGCATACCGTAAACCCTCTAATTGAACGCCCGATCCTAACCGTCCAATTTGAACTCATATATCTCATTTCCGTAAAAGATATCAAAAAGTCAATTTTTAATATCTTTTATAGGAACCGAGATAAATCGGCTCAAAGTTAGGAAAGTAATACAAGTGAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATTCATTATTTTCTTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTTATCACGCTGTAGAACAT</pcr_primer_p1>
		<pcr_primer_p2>GGTAGACTCTAGCTGTAAACCAG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTCTTTATCACGCTGTAGAACATCTACGCCCTCCCTCCCCTCTCCTGGTGTGGGCCTCATGGCGCAGCTGTGTGCGTGCGCGGCTATTGTGCGGAAGGCCGCGGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTCAAAACCCAAAACCGGACAGCCGGACACTAGGACCAACAGACGCGTCTAGCGTTTTATATATAAGAAAGATGACGTCATTATACACTGGTTTACAGCTAGAGTCTACC</canonical_amplicon>
		<polymorphic_amplicon>TTCTTTATCACGCTGTAGAACATCTACGCCCTCCCTCCCCTCTCCTGGTGTGGGCCTCATGGCGCAGCTGTGTGCGTGCGCGGCTATTGTGCGGAAGGCCGCGGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTKAAAACCCAAAACCGGACAGCCGGACACTAGGACCAACAGACGCGTCTAGCGTTTTATATATAAGAAAGATGACGTCATTATACACTGGTTTACAGCTAGAGTCTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31210</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>128698</contig_pos>
        <strand></strand>
        <context>cactaggacc[A/T]acagacgcgt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCCAACCTTTCATTTCAAAACCCAAAACCGGACAGCCGGACACTAGGACC</left_flank>
        <right_flank>ACAGACGCGTCTAGCGTTTTATATATAAGAAAGATGACGTCATTATACAC</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAAAATTTAGATTTAGATTTTGTTTTTGAAAAGTGAAGATAAATGTTCCAGAATTTTTAATTTTATAATTCACAGCAATATTTGAAGATTATCATATTGAAATCACAAAAAAAGTGGTTCCAAAAATGTCACTAAAACCAGAAAATTTTGGAAAATTGAAGTCTAAAGGCTTAATTGTTTTTTAAAATTTCTTTCCGATTTCCGGATATTATTTGGTCCGTCAGACTTTAATTTTTTATTTGTAACCAGCCTTCTGTTTGCCGCGCCTCCGGCGCTTCACAATTCATTTTCAATTATTCGTCGCTCCACTCCTCACTTTTCAATTTTTCTTTATCACGCTGTAGAACATCTACGCCCTCCCTCCCCTCTCCTGGTGTGGGCCTCATGGCGCAGCTGTGTGCGTGCGCGGCTATTGTGCGGAAGGCCGCGGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTCAAAACCCAAAACCGGACAGCCGGACACTAGGACCAACAGACGCGTCTAGCGTTTTATATATAAGAAAGATGACGTCATTATACACTGGTTTACAGCTAGAGTCTACCTGGATTCTGAAAGCGCATACCGTAAACCCTCTAATTGAACGCCCGATCCTAACCGTCCAATTTGAACTCATATATCTCATTTCCGTAAAAGATATCAAAAAGTCAATTTTTAATATCTTTTATAGGAACCGAGATAAATCGGCTCAAAGTTAGGAAAGTAATACAAGTGAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAATGGATGGGTATGA</canonical>
            <polymorphic>ATGAAAATTTAGATTTAGATTTTGTTTTTGAAAAGTGAAGATAAATGTTCCAGAATTTTTAATTTTATAATTCACAGCAATATTTGAAGATTATCATATTGAAATCACAAAAAAAGTGGTTCCAAAAATGTCACTAAAACCAGAAAATTTTGGAAAATTGAAGTCTAAAGGCTTAATTGTTTTTTAAAATTTCTTTCCGATTTCCGGATATTATTTGGTCCGTCAGACTTTAATTTTTTATTTGTAACCAGCCTTCTGTTTGCCGCGCCTCCGGCGCTTCACAATTCATTTTCAATTATTCGTCGCTCCACTCCTCACTTTTCAATTTTTCTTTATCACGCTGTAGAACATCTACGCCCTCCCTCCCCTCTCCTGGTGTGGGCCTCATGGCGCAGCTGTGTGCGTGCGCGGCTATTGTGCGGAAGGCCGCGGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTCAAAACCCAAAACCGGACAGCCGGACACTAGGACCWACAGACGCGTCTAGCGTTTTATATATAAGAAAGATGACGTCATTATACACTGGTTTACAGCTAGAGTCTACCTGGATTCTGAAAGCGCATACCGTAAACCCTCTAATTGAACGCCCGATCCTAACCGTCCAATTTGAACTCATATATCTCATTTCCGTAAAAGATATCAAAAAGTCAATTTTTAATATCTTTTATAGGAACCGAGATAAATCGGCTCAAAGTTAGGAAAGTAATACAAGTGAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAATGGATGGGTATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTTATCACGCTGTAGAACAT</pcr_primer_p1>
		<pcr_primer_p2>GGTAGACTCTAGCTGTAAACCAG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTCTTTATCACGCTGTAGAACATCTACGCCCTCCCTCCCCTCTCCTGGTGTGGGCCTCATGGCGCAGCTGTGTGCGTGCGCGGCTATTGTGCGGAAGGCCGCGGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTCAAAACCCAAAACCGGACAGCCGGACACTAGGACCAACAGACGCGTCTAGCGTTTTATATATAAGAAAGATGACGTCATTATACACTGGTTTACAGCTAGAGTCTACC</canonical_amplicon>
		<polymorphic_amplicon>TTCTTTATCACGCTGTAGAACATCTACGCCCTCCCTCCCCTCTCCTGGTGTGGGCCTCATGGCGCAGCTGTGTGCGTGCGCGGCTATTGTGCGGAAGGCCGCGGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTCAAAACCCAAAACCGGACAGCCGGACACTAGGACCWACAGACGCGTCTAGCGTTTTATATATAAGAAAGATGACGTCATTATACACTGGTTTACAGCTAGAGTCTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31211</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>129029</contig_pos>
        <strand>-</strand>
        <context>CCGAAAAAAW[A/T]TTTCTGCGCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAA</left_flank>
        <right_flank>TTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTATCACGCTGTAGAACATCTACGCCCTCCCTCCCCTCTCCTGGTGTGGGCCTCATGGCGCAGCTGTGTGCGTGCGCGGCTATTGTGCGGAAGGCCGCGGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTCAAAACCCAAAACCGGACAGCCGGACACTAGGACCAACAGACGCGTCTAGCGTTTTATATATAAGAAAGATGACGTCATTATACACTGGTTTACAGCTAGAGTCTACCTGGATTCTGAAAGCGCATACCGTAAACCCTCTAATTGAACGCCCGATCCTAACCGTCCAATTTGAACTCATATATCTCATTTCCGTAAAAGATATCAAAAAGTCAATTTTTAATATCTTTTATAGGAACCGAGATAAATCGGCTCAAAGTTAGGAAAGTAATACAAGTGAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAATGGATGGGTATGACTCTACTTCCGGTGAGAATTAATAGTTTTTTTTTAATTCTCAAATTCTCGAATACAATTTTCAGTTCTCCTTAATAGGTTTCATAGCCAATTGGATGATTGTTCTATCAATTTGGAAATCGAAGAATCTAGCTCACTCATTCGTGTTTCTCACTGCAAACTTTTCGCTTCTCAAGGTGGTTTTTTTTCGATTTAGTTCATTTTGAAACTTTTTTCAGGCCCTATACTCTTCTCTCTATCTGTTTTACATATTTCCAATGATCAGTTTGGATTCAAATTTTCTAAAAGAAGAATCTTATCATATTGGATATCTCATCCTTATCTTATGTGAT</canonical>
            <polymorphic>TTTATCACGCTGTAGAACATCTACGCCCTCCCTCCCCTCTCCTGGTGTGGGCCTCATGGCGCAGCTGTGTGCGTGCGCGGCTATTGTGCGGAAGGCCGCGGGTTCGGTTTTGGTGGCGGCCAACCTTTCATTTCAAAACCCAAAACCGGACAGCCGGACACTAGGACCAACAGACGCGTCTAGCGTTTTATATATAAGAAAGATGACGTCATTATACACTGGTTTACAGCTAGAGTCTACCTGGATTCTGAAAGCGCATACCGTAAACCCTCTAATTGAACGCCCGATCCTAACCGTCCAATTTGAACTCATATATCTCATTTCCGTAAAAGATATCAAAAAGTCAATTTTTAATATCTTTTATAGGAACCGAGATAAATCGGCTCAAAGTTAGGAAAGTAATACAAGTGAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAAWTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAATGGATGGGTATGACTCTACTTCCGGTGAGAATTAATAGTTTTTTTTTAATTCTCAAATTCTCGAATACAATTTTCAGTTCTCCTTAATAGGTTTCATAGCCAATTGGATGATTGTTCTATCAATTTGGAAATCGAAGAATCTAGCTCACTCATTCGTGTTTCTCACTGCAAACTTTTCGCTTCTCAAGGTGGTTTTTTTTCGATTTAGTTCATTTTGAAACTTTTTTCAGGCCCTATACTCTTCTCTCTATCTGTTTTACATATTTCCAATGATCAGTTTGGATTCAAATTTTCTAAAAGAAGAATCTTATCATATTGGATATCTCATCCTTATCTTATGTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>422 232 139 75 57 35 27 13</canonical_bands>
                <polymorphic_bands>422 232 139 102 57 35 13</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>273 166 113 77 75 57 46 35 33 27 26 20 18 13 13 8</canonical_bands>
                <polymorphic_bands>273 166 113 102 77 57 46 35 33 26 20 18 13 13 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATGTTCAAAAATTCGTAAG</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTGAGTTTTCATGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAAT</canonical_amplicon>
		<polymorphic_amplicon>GAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAAWTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31212</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>129132</contig_pos>
        <strand>-</strand>
        <context>CATATATGTT[A/T]TTTTTCGAWC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTT</left_flank>
        <right_flank>TTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGTTTTGGTGGCGGCCAACCTTTCATTTCAAAACCCAAAACCGGACAGCCGGACACTAGGACCAACAGACGCGTCTAGCGTTTTATATATAAGAAAGATGACGTCATTATACACTGGTTTACAGCTAGAGTCTACCTGGATTCTGAAAGCGCATACCGTAAACCCTCTAATTGAACGCCCGATCCTAACCGTCCAATTTGAACTCATATATCTCATTTCCGTAAAAGATATCAAAAAGTCAATTTTTAATATCTTTTATAGGAACCGAGATAAATCGGCTCAAAGTTAGGAAAGTAATACAAGTGAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAATGGATGGGTATGACTCTACTTCCGGTGAGAATTAATAGTTTTTTTTTAATTCTCAAATTCTCGAATACAATTTTCAGTTCTCCTTAATAGGTTTCATAGCCAATTGGATGATTGTTCTATCAATTTGGAAATCGAAGAATCTAGCTCACTCATTCGTGTTTCTCACTGCAAACTTTTCGCTTCTCAAGGTGGTTTTTTTTCGATTTAGTTCATTTTGAAACTTTTTTCAGGCCCTATACTCTTCTCTCTATCTGTTTTACATATTTCCAATGATCAGTTTGGATTCAAATTTTCTAAAAGAAGAATCTTATCATATTGGATATCTCATCCTTATCTTATGTGATGCTTCTACACACATCCATTTTATAATATCCATAAATCGATTTTTGGCAGTTTTTGTACCACTTTTGTATTTCAAAACATTTCGCCCGAAAACAACGCAAATGT</canonical>
            <polymorphic>TCGGTTTTGGTGGCGGCCAACCTTTCATTTCAAAACCCAAAACCGGACAGCCGGACACTAGGACCAACAGACGCGTCTAGCGTTTTATATATAAGAAAGATGACGTCATTATACACTGGTTTACAGCTAGAGTCTACCTGGATTCTGAAAGCGCATACCGTAAACCCTCTAATTGAACGCCCGATCCTAACCGTCCAATTTGAACTCATATATCTCATTTCCGTAAAAGATATCAAAAAGTCAATTTTTAATATCTTTTATAGGAACCGAGATAAATCGGCTCAAAGTTAGGAAAGTAATACAAGTGAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTWTTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAATGGATGGGTATGACTCTACTTCCGGTGAGAATTAATAGTTTTTTTTTAATTCTCAAATTCTCGAATACAATTTTCAGTTCTCCTTAATAGGTTTCATAGCCAATTGGATGATTGTTCTATCAATTTGGAAATCGAAGAATCTAGCTCACTCATTCGTGTTTCTCACTGCAAACTTTTCGCTTCTCAAGGTGGTTTTTTTTCGATTTAGTTCATTTTGAAACTTTTTTCAGGCCCTATACTCTTCTCTCTATCTGTTTTACATATTTCCAATGATCAGTTTGGATTCAAATTTTCTAAAAGAAGAATCTTATCATATTGGATATCTCATCCTTATCTTATGTGATGCTTCTACACACATCCATTTTATAATATCCATAAATCGATTTTTGGCAGTTTTTGTACCACTTTTGTATTTCAAAACATTTCGCCCGAAAACAACGCAAATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATGTTCAAAAATTCGTAAG</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTGAGTTTTCATGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTTTTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAAT</canonical_amplicon>
		<polymorphic_amplicon>GAAAATGTTCAAAAATTCGTAAGGACTTATATTTTCTAGAAATGTCAGAATTTTTTTCTAGAATTTTCAGGAAAAAACTTCCGAAAAAAATTTTCTGCGCCACTACACATCCCATGAGAATCAGGCGGGTCTGAAAAAGGAAGTAAACAATGAGCAGATTCGAAATTTCAGATTCCCTCCCGTCATATATGTTWTTTTTCGATCATTATTCATTATTTTCTTCTAGAAAAACATGAAAACTCAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31213</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>134778</contig_pos>
        <strand>+</strand>
        <context>AATGAGAACY[C/T]CGAATTTKTT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACC</left_flank>
        <right_flank>CGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAGGAAACTCACGAAATGATGTGAACCATCAGTAGTTTCCGATATTCATTTTAAAATGTTCTGTTAAATTAGAAGTAAGAAAAACGAATTTCAACTCGCATCATTCAAAAAAAAATTAGCTGATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGATAACGAAAATGGTAATTATGAAATCGGTAATCTGAAATTTCGTTTTCTAAGTTTAAGTCATACAGCATTTTTGAATTGTGTAGAGCTAAAAGACGACTCAACAACTCTGATAAGACCTTTTTTTTATATTTTGCATAAGCTTTTTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTCGTTCGTCTCCAATTCGAAAACGAGAAGACTATTCTTCAACCACTTCAAGGAATCTGGATCCAGAAAATATCACTGTCACGTCTTCTGGAAGTCAGCATCTGACGACTCCGGAAGTTCGGAATCTGACGTCTTCTGGAAATCAAAACCGGACCGTTTCGAAACTTTTCACTACTCCAAAAGCCCCTAAAAGCTTTACCGAAAGTTCGGAAAAATTCGAAAACGAAAAAAAAGATAAGAAAAAGAAAAAGGAGAAGAAGAAGAGAATTCCAAATCATGGAGAAACATTTGATTGGGCGAATTTCAACGAAAAGGAGGGTCCGAAGAAATTGAGTTTGGAGAGGAATTACTTGGTTACTGTAGTTTTGGTTTTTTACTTGTGTGCATTTTTCTTTTGATTAGTCAATAAAGATTTTT</canonical>
            <polymorphic>ATAAGGAAACTCACGAAATGATGTGAACCATCAGTAGTTTCCGATATTCATTTTAAAATGTTCTGTTAAATTAGAAGTAAGAAAAACGAATTTCAACTCGCATCATTCAAAAAAAAATTAGCTGATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGATAACGAAAATGGTAATTATGAAATCGGTAATCTGAAATTTCGTTTTCTAAGTTTAAGTCATACAGCATTTTTGAATTGTGTAGAGCTAAAAGACGACTCAACAACTCTGATAAGACCTTTTTTTTATATTTTGCATAAGCTTTTTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCYCGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTCGTTCGTCTCCAATTCGAAAACGAGAAGACTATTCTTCAACCACTTCAAGGAATCTGGATCCAGAAAATATCACTGTCACGTCTTCTGGAAGTCAGCATCTGACGACTCCGGAAGTTCGGAATCTGACGTCTTCTGGAAATCAAAACCGGACCGTTTCGAAACTTTTCACTACTCCAAAAGCCCCTAAAAGCTTTACCGAAAGTTCGGAAAAATTCGAAAACGAAAAAAAAGATAAGAAAAAGAAAAAGGAGAAGAAGAAGAGAATTCCAAATCATGGAGAAACATTTGATTGGGCGAATTTCAACGAAAAGGAGGGTCCGAAGAAATTGAGTTTGGAGAGGAATTACTTGGTTACTGTAGTTTTGGTTTTTTACTTGTGTGCATTTTTCTTTTGATTAGTCAATAAAGATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>211 130 129 128 128 90 77 33 30 13 12 9 6 2 2</canonical_bands>
                <polymorphic_bands>211 205 130 129 128 90 33 30 13 12 9 6 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAAGATGAAAAATGAGCAACT</pcr_primer_p1>
		<pcr_primer_p2>GAGCGCATACTAAAATTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTC</canonical_amplicon>
		<polymorphic_amplicon>TTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCYCGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31214</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>134797</contig_pos>
        <strand>+</strand>
        <context>TTGCTTCTTG[G/T]AKTCTTGCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTG</left_flank>
        <right_flank>AGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGTGAACCATCAGTAGTTTCCGATATTCATTTTAAAATGTTCTGTTAAATTAGAAGTAAGAAAAACGAATTTCAACTCGCATCATTCAAAAAAAAATTAGCTGATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGATAACGAAAATGGTAATTATGAAATCGGTAATCTGAAATTTCGTTTTCTAAGTTTAAGTCATACAGCATTTTTGAATTGTGTAGAGCTAAAAGACGACTCAACAACTCTGATAAGACCTTTTTTTTATATTTTGCATAAGCTTTTTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTCGTTCGTCTCCAATTCGAAAACGAGAAGACTATTCTTCAACCACTTCAAGGAATCTGGATCCAGAAAATATCACTGTCACGTCTTCTGGAAGTCAGCATCTGACGACTCCGGAAGTTCGGAATCTGACGTCTTCTGGAAATCAAAACCGGACCGTTTCGAAACTTTTCACTACTCCAAAAGCCCCTAAAAGCTTTACCGAAAGTTCGGAAAAATTCGAAAACGAAAAAAAAGATAAGAAAAAGAAAAAGGAGAAGAAGAAGAGAATTCCAAATCATGGAGAAACATTTGATTGGGCGAATTTCAACGAAAAGGAGGGTCCGAAGAAATTGAGTTTGGAGAGGAATTACTTGGTTACTGTAGTTTTGGTTTTTTACTTGTGTGCATTTTTCTTTTGATTAGTCAATAAAGATTTTTAAAAAATATGGAAAATTTT</canonical>
            <polymorphic>GATGTGAACCATCAGTAGTTTCCGATATTCATTTTAAAATGTTCTGTTAAATTAGAAGTAAGAAAAACGAATTTCAACTCGCATCATTCAAAAAAAAATTAGCTGATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGATAACGAAAATGGTAATTATGAAATCGGTAATCTGAAATTTCGTTTTCTAAGTTTAAGTCATACAGCATTTTTGAATTGTGTAGAGCTAAAAGACGACTCAACAACTCTGATAAGACCTTTTTTTTATATTTTGCATAAGCTTTTTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGKAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTCGTTCGTCTCCAATTCGAAAACGAGAAGACTATTCTTCAACCACTTCAAGGAATCTGGATCCAGAAAATATCACTGTCACGTCTTCTGGAAGTCAGCATCTGACGACTCCGGAAGTTCGGAATCTGACGTCTTCTGGAAATCAAAACCGGACCGTTTCGAAACTTTTCACTACTCCAAAAGCCCCTAAAAGCTTTACCGAAAGTTCGGAAAAATTCGAAAACGAAAAAAAAGATAAGAAAAAGAAAAAGGAGAAGAAGAAGAGAATTCCAAATCATGGAGAAACATTTGATTGGGCGAATTTCAACGAAAAGGAGGGTCCGAAGAAATTGAGTTTGGAGAGGAATTACTTGGTTACTGTAGTTTTGGTTTTTTACTTGTGTGCATTTTTCTTTTGATTAGTCAATAAAGATTTTTAAAAAATATGGAAAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAAGATGAAAAATGAGCAACT</pcr_primer_p1>
		<pcr_primer_p2>GAGCGCATACTAAAATTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTC</canonical_amplicon>
		<polymorphic_amplicon>TTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGKAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31215</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>134874</contig_pos>
        <strand>+</strand>
        <context>CGTTCGTCTC[C/T]AATTCGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTCGTTCGTCTC</left_flank>
        <right_flank>AATTCGAAAACGAGAAGACTATTCTTCAACCACTTCAAGGAATCTGGATC</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGCATCATTCAAAAAAAAATTAGCTGATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGATAACGAAAATGGTAATTATGAAATCGGTAATCTGAAATTTCGTTTTCTAAGTTTAAGTCATACAGCATTTTTGAATTGTGTAGAGCTAAAAGACGACTCAACAACTCTGATAAGACCTTTTTTTTATATTTTGCATAAGCTTTTTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTCGTTCGTCTCCAATTCGAAAACGAGAAGACTATTCTTCAACCACTTCAAGGAATCTGGATCCAGAAAATATCACTGTCACGTCTTCTGGAAGTCAGCATCTGACGACTCCGGAAGTTCGGAATCTGACGTCTTCTGGAAATCAAAACCGGACCGTTTCGAAACTTTTCACTACTCCAAAAGCCCCTAAAAGCTTTACCGAAAGTTCGGAAAAATTCGAAAACGAAAAAAAAGATAAGAAAAAGAAAAAGGAGAAGAAGAAGAGAATTCCAAATCATGGAGAAACATTTGATTGGGCGAATTTCAACGAAAAGGAGGGTCCGAAGAAATTGAGTTTGGAGAGGAATTACTTGGTTACTGTAGTTTTGGTTTTTTACTTGTGTGCATTTTTCTTTTGATTAGTCAATAAAGATTTTTAAAAAATATGGAAAATTTTGAAAAAAAGTTAATTTTCAATTTTGCCTGTAAAATCCCCTCAAAAAAGTTGAAAACGTGGGCAAAAGATGAGGGTGC</canonical>
            <polymorphic>CTCGCATCATTCAAAAAAAAATTAGCTGATGCTTCTTATCAGTTCAAAGAGATAGTGCACTTAAAGAAAAAAAAGAATTAGAGAAGCAGAAAATCGTCATTTTTAATGATAACGAAAATGGTAATTATGAAATCGGTAATCTGAAATTTCGTTTTCTAAGTTTAAGTCATACAGCATTTTTGAATTGTGTAGAGCTAAAAGACGACTCAACAACTCTGATAAGACCTTTTTTTTATATTTTGCATAAGCTTTTTTAAGATGAAAAATGAGCAACTTTGTATAAAATGTTCGAAAAAAATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTCGTTCGTCTCYAATTCGAAAACGAGAAGACTATTCTTCAACCACTTCAAGGAATCTGGATCCAGAAAATATCACTGTCACGTCTTCTGGAAGTCAGCATCTGACGACTCCGGAAGTTCGGAATCTGACGTCTTCTGGAAATCAAAACCGGACCGTTTCGAAACTTTTCACTACTCCAAAAGCCCCTAAAAGCTTTACCGAAAGTTCGGAAAAATTCGAAAACGAAAAAAAAGATAAGAAAAAGAAAAAGGAGAAGAAGAAGAGAATTCCAAATCATGGAGAAACATTTGATTGGGCGAATTTCAACGAAAAGGAGGGTCCGAAGAAATTGAGTTTGGAGAGGAATTACTTGGTTACTGTAGTTTTGGTTTTTTACTTGTGTGCATTTTTCTTTTGATTAGTCAATAAAGATTTTTAAAAAATATGGAAAATTTTGAAAAAAAGTTAATTTTCAATTTTGCCTGTAAAATCCCCTCAAAAAAGTTGAAAACGTGGGCAAAAGATGAGGGTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTAACCTTGGTCAGGTG</pcr_primer_p1>
		<pcr_primer_p2>GGATCCAGATTCCTTGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTCGTTCGTCTCCAATTCGAAAACGAGAAGACTATTCTTCAACCACTTCAAGGAATCTGGATCC</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTAACCTTGGTCAGGTGACCGTATCACTAGAGTATCCTCCAAAACCAACGGCTCAAAACATTTTTTGCTGGAAAAACAGTTTTTTTCAATAAAATGAGAACCACGAATTTTTTGCTTCTTGTAGTCTTGCTCATCGGTAATTTTGAAAATTGACGTCTTCTGGAAGATTCTGAATTTTAGTATGCGCTCGTTCGTCTCYAATTCGAAAACGAGAAGACTATTCTTCAACCACTTCAAGGAATCTGGATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31216</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>136002</contig_pos>
        <strand>+</strand>
        <context>TAAGGAATGG[A/G]ATGATTATAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCTCGCTTCACTGATCATTGGAACCGTTTTGGCAAAGGATAAGGAATGG</left_flank>
        <right_flank>ATGATTATACGGATGAGGAGAAACGAAATGCTTCAGTCGGTCTGATCATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAAAATTTACTACTTTTTTTGACGTTTAAACATGGTCCAATTTTCTCTACAACGCCAACCAAACCGTCAACTTTGAGCTCAATTATCTCGATCACTGTGAAAGATATAAAAAATGTATCAACTGATAAAATGTTGATGATATTATGGCAAACATTTTATCAGTTGACATATTTTTGTTATCTCTTATAGAAATTGAGATAATTGAGCCCAAAGTGCCGGTAGGGTGGCTTTCTTTTTATGGGCCGTGCACCTTTGGTTTTCCTTTTAATTGGAAAAAAAATAGATGGCGTCACTCAAAAACTACCTGGATCACGTCTTTATTCCACGTTTACAGATGACCTTCAAAGATAAGAAACTGATATAAATTCTGGGAAAATAACTAGGAGAAAAAAAGCAACATCAGTTTTCCTGACGACATCAACCGAAACATGATTTTCAAACAACTGCTCCTCGCTTCACTGATCATTGGAACCGTTTTGGCAAAGGATAAGGAATGGGATGATTATACGGATGAGGAGAAACGAAATGCTTCAGTCGGTCTGATCATCATTATTGTGGTTGGAGTGCTCATTTGTATCAGTGTCAGTGCAGCGGCTGGATTCTTTTACATGATGCGAAAGAGGAATAGCAATAATGGAGGAGTGATGGTGGTGCATTAAGGATTCGGACATATAAGTGAACTTGAATAAAATGATATAAAAATTACAAATTTTATTCAAAGTAAAATTACAATGTTATTCAAAGTTCATGAAAGGTTCTCTCAACATGAAAACACAAAATCGATTTCCGGAAACCAAAATACAAAATTTATAAAATTTTGATATTCTAAAATACACTTTTTGAAAAATCGACAGATAAGAAGAAACGGATTTTTTTTACCTAATTATTTTCCCGCTTGGTTTTTTGACGAAACCTCAGATTGGGCCAATTTTCAAAAAGTTTCTTAATCAGTTAACTGTGTTAGAAGTATCAGGTTGCGTACTAAATTTTGTCATCAC</canonical>
            <polymorphic>AACAAAATTTACTACTTTTTTTGACGTTTAAACATGGTCCAATTTTCTCTACAACGCCAACCAAACCGTCAACTTTGAGCTCAATTATCTCGATCACTGTGAAAGATATAAAAAATGTATCAACTGATAAAATGTTGATGATATTATGGCAAACATTTTATCAGTTGACATATTTTTGTTATCTCTTATAGAAATTGAGATAATTGAGCCCAAAGTGCCGGTAGGGTGGCTTTCTTTTTATGGGCCGTGCACCTTTGGTTTTCCTTTTAATTGGAAAAAAAATAGATGGCGTCACTCAAAAACTACCTGGATCACGTCTTTATTCCACGTTTACAGATGACCTTCAAAGATAAGAAACTGATATAAATTCTGGGAAAATAACTAGGAGAAAAAAAGCAACATCAGTTTTCCTGACGACATCAACCGAAACATGATTTTCAAACAACTGCTCCTCGCTTCACTGATCATTGGAACCGTTTTGGCAAAGGATAAGGAATGGRATGATTATACGGATGAGGAGAAACGAAATGCTTCAGTCGGTCTGATCATCATTATTGTGGTTGGAGTGCTCATTTGTATCAGTGTCAGTGCAGCGGCTGGATTCTTTTACATGATGCGAAAGAGGAATAGCAATAATGGAGGAGTGATGGTGGTGCATTAAGGATTCGGACATATAAGTGAACTTGAATAAAATGATATAAAAATTACAAATTTTATTCAAAGTAAAATTACAATGTTATTCAAAGTTCATGAAAGGTTCTCTCAACATGAAAACACAAAATCGATTTCCGGAAACCAAAATACAAAATTTATAAAATTTTGATATTCTAAAATACACTTTTTGAAAAATCGACAGATAAGAAGAAACGGATTTTTTTTACCTAATTATTTTCCCGCTTGGTTTTTTGACGAAACCTCAGATTGGGCCAATTTTCAAAAAGTTTCTTAATCAGTTAACTGTGTTAGAAGTATCAGGTTGCGTACTAAATTTTGTCATCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACCTTCAAAGATAAGAAACTG</pcr_primer_p1>
		<pcr_primer_p2>TGACACTGATACAAATGAGCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGACCTTCAAAGATAAGAAACTGATATAAATTCTGGGAAAATAACTAGGAGAAAAAAAGCAACATCAGTTTTCCTGACGACATCAACCGAAACATGATTTTCAAACAACTGCTCCTCGCTTCACTGATCATTGGAACCGTTTTGGCAAAGGATAAGGAATGGGATGATTATACGGATGAGGAGAAACGAAATGCTTCAGTCGGTCTGATCATCATTATTGTGGTTGGAGTGCTCATTTGTATCAGTGTCA</canonical_amplicon>
		<polymorphic_amplicon>TGACCTTCAAAGATAAGAAACTGATATAAATTCTGGGAAAATAACTAGGAGAAAAAAAGCAACATCAGTTTTCCTGACGACATCAACCGAAACATGATTTTCAAACAACTGCTCCTCGCTTCACTGATCATTGGAACCGTTTTGGCAAAGGATAAGGAATGGRATGATTATACGGATGAGGAGAAACGAAATGCTTCAGTCGGTCTGATCATCATTATTGTGGTTGGAGTGCTCATTTGTATCAGTGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31217</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>136016</contig_pos>
        <strand>+</strand>
        <context>ATTATACGGA[G/T]GAGGAGAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATCATTGGAACCGTTTTGGCAAAGGATAAGGAATGGGATGATTATACGGA</left_flank>
        <right_flank>GAGGAGAAACGAAATGCTTCAGTCGGTCTGATCATCATTATTGTGGTTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTTTTGACGTTTAAACATGGTCCAATTTTCTCTACAACGCCAACCAAACCGTCAACTTTGAGCTCAATTATCTCGATCACTGTGAAAGATATAAAAAATGTATCAACTGATAAAATGTTGATGATATTATGGCAAACATTTTATCAGTTGACATATTTTTGTTATCTCTTATAGAAATTGAGATAATTGAGCCCAAAGTGCCGGTAGGGTGGCTTTCTTTTTATGGGCCGTGCACCTTTGGTTTTCCTTTTAATTGGAAAAAAAATAGATGGCGTCACTCAAAAACTACCTGGATCACGTCTTTATTCCACGTTTACAGATGACCTTCAAAGATAAGAAACTGATATAAATTCTGGGAAAATAACTAGGAGAAAAAAAGCAACATCAGTTTTCCTGACGACATCAACCGAAACATGATTTTCAAACAACTGCTCCTCGCTTCACTGATCATTGGAACCGTTTTGGCAAAGGATAAGGAATGGGATGATTATACGGATGAGGAGAAACGAAATGCTTCAGTCGGTCTGATCATCATTATTGTGGTTGGAGTGCTCATTTGTATCAGTGTCAGTGCAGCGGCTGGATTCTTTTACATGATGCGAAAGAGGAATAGCAATAATGGAGGAGTGATGGTGGTGCATTAAGGATTCGGACATATAAGTGAACTTGAATAAAATGATATAAAAATTACAAATTTTATTCAAAGTAAAATTACAATGTTATTCAAAGTTCATGAAAGGTTCTCTCAACATGAAAACACAAAATCGATTTCCGGAAACCAAAATACAAAATTTATAAAATTTTGATATTCTAAAATACACTTTTTGAAAAATCGACAGATAAGAAGAAACGGATTTTTTTTACCTAATTATTTTCCCGCTTGGTTTTTTGACGAAACCTCAGATTGGGCCAATTTTCAAAAAGTTTCTTAATCAGTTAACTGTGTTAGAAGTATCAGGTTGCGTACTAAATTTTGTCATCACCAATTTTTCAAAAA</canonical>
            <polymorphic>CTTTTTTTGACGTTTAAACATGGTCCAATTTTCTCTACAACGCCAACCAAACCGTCAACTTTGAGCTCAATTATCTCGATCACTGTGAAAGATATAAAAAATGTATCAACTGATAAAATGTTGATGATATTATGGCAAACATTTTATCAGTTGACATATTTTTGTTATCTCTTATAGAAATTGAGATAATTGAGCCCAAAGTGCCGGTAGGGTGGCTTTCTTTTTATGGGCCGTGCACCTTTGGTTTTCCTTTTAATTGGAAAAAAAATAGATGGCGTCACTCAAAAACTACCTGGATCACGTCTTTATTCCACGTTTACAGATGACCTTCAAAGATAAGAAACTGATATAAATTCTGGGAAAATAACTAGGAGAAAAAAAGCAACATCAGTTTTCCTGACGACATCAACCGAAACATGATTTTCAAACAACTGCTCCTCGCTTCACTGATCATTGGAACCGTTTTGGCAAAGGATAAGGAATGGGATGATTATACGGAKGAGGAGAAACGAAATGCTTCAGTCGGTCTGATCATCATTATTGTGGTTGGAGTGCTCATTTGTATCAGTGTCAGTGCAGCGGCTGGATTCTTTTACATGATGCGAAAGAGGAATAGCAATAATGGAGGAGTGATGGTGGTGCATTAAGGATTCGGACATATAAGTGAACTTGAATAAAATGATATAAAAATTACAAATTTTATTCAAAGTAAAATTACAATGTTATTCAAAGTTCATGAAAGGTTCTCTCAACATGAAAACACAAAATCGATTTCCGGAAACCAAAATACAAAATTTATAAAATTTTGATATTCTAAAATACACTTTTTGAAAAATCGACAGATAAGAAGAAACGGATTTTTTTTACCTAATTATTTTCCCGCTTGGTTTTTTGACGAAACCTCAGATTGGGCCAATTTTCAAAAAGTTTCTTAATCAGTTAACTGTGTTAGAAGTATCAGGTTGCGTACTAAATTTTGTCATCACCAATTTTTCAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACCTTCAAAGATAAGAAACTG</pcr_primer_p1>
		<pcr_primer_p2>TGACACTGATACAAATGAGCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGACCTTCAAAGATAAGAAACTGATATAAATTCTGGGAAAATAACTAGGAGAAAAAAAGCAACATCAGTTTTCCTGACGACATCAACCGAAACATGATTTTCAAACAACTGCTCCTCGCTTCACTGATCATTGGAACCGTTTTGGCAAAGGATAAGGAATGGGATGATTATACGGATGAGGAGAAACGAAATGCTTCAGTCGGTCTGATCATCATTATTGTGGTTGGAGTGCTCATTTGTATCAGTGTCA</canonical_amplicon>
		<polymorphic_amplicon>TGACCTTCAAAGATAAGAAACTGATATAAATTCTGGGAAAATAACTAGGAGAAAAAAAGCAACATCAGTTTTCCTGACGACATCAACCGAAACATGATTTTCAAACAACTGCTCCTCGCTTCACTGATCATTGGAACCGTTTTGGCAAAGGATAAGGAATGGGATGATTATACGGAKGAGGAGAAACGAAATGCTTCAGTCGGTCTGATCATCATTATTGTGGTTGGAGTGCTCATTTGTATCAGTGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31218</snp_id>
        <super_contig>c005900662.Contig5</super_contig>
        <contig_pos>136050</contig_pos>
        <strand>+</strand>
        <context>CGGTCTGATC[A/C]TCATTATTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGGATGATTATACGGATGAGGAGAAACGAAATGCTTCAGTCGGTCTGATC</left_flank>
        <right_flank>TCATTATTGTGGTTGGAGTGCTCATTTGTATCAGTGTCAGTGCAGCGGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTACAACGCCAACCAAACCGTCAACTTTGAGCTCAATTATCTCGATCACTGTGAAAGATATAAAAAATGTATCAACTGATAAAATGTTGATGATATTATGGCAAACATTTTATCAGTTGACATATTTTTGTTATCTCTTATAGAAATTGAGATAATTGAGCCCAAAGTGCCGGTAGGGTGGCTTTCTTTTTATGGGCCGTGCACCTTTGGTTTTCCTTTTAATTGGAAAAAAAATAGATGGCGTCACTCAAAAACTACCTGGATCACGTCTTTATTCCACGTTTACAGATGACCTTCAAAGATAAGAAACTGATATAAATTCTGGGAAAATAACTAGGAGAAAAAAAGCAACATCAGTTTTCCTGACGACATCAACCGAAACATGATTTTCAAACAACTGCTCCTCGCTTCACTGATCATTGGAACCGTTTTGGCAAAGGATAAGGAATGGGATGATTATACGGATGAGGAGAAACGAAATGCTTCAGTCGGTCTGATCATCATTATTGTGGTTGGAGTGCTCATTTGTATCAGTGTCAGTGCAGCGGCTGGATTCTTTTACATGATGCGAAAGAGGAATAGCAATAATGGAGGAGTGATGGTGGTGCATTAAGGATTCGGACATATAAGTGAACTTGAATAAAATGATATAAAAATTACAAATTTTATTCAAAGTAAAATTACAATGTTATTCAAAGTTCATGAAAGGTTCTCTCAACATGAAAACACAAAATCGATTTCCGGAAACCAAAATACAAAATTTATAAAATTTTGATATTCTAAAATACACTTTTTGAAAAATCGACAGATAAGAAGAAACGGATTTTTTTTACCTAATTATTTTCCCGCTTGGTTTTTTGACGAAACCTCAGATTGGGCCAATTTTCAAAAAGTTTCTTAATCAGTTAACTGTGTTAGAAGTATCAGGTTGCGTACTAAATTTTGTCATCACCAATTTTTCAAAAAAAAAACAGATTTTTCGAGAAATTTATGAAAATCA</canonical>
            <polymorphic>CTACAACGCCAACCAAACCGTCAACTTTGAGCTCAATTATCTCGATCACTGTGAAAGATATAAAAAATGTATCAACTGATAAAATGTTGATGATATTATGGCAAACATTTTATCAGTTGACATATTTTTGTTATCTCTTATAGAAATTGAGATAATTGAGCCCAAAGTGCCGGTAGGGTGGCTTTCTTTTTATGGGCCGTGCACCTTTGGTTTTCCTTTTAATTGGAAAAAAAATAGATGGCGTCACTCAAAAACTACCTGGATCACGTCTTTATTCCACGTTTACAGATGACCTTCAAAGATAAGAAACTGATATAAATTCTGGGAAAATAACTAGGAGAAAAAAAGCAACATCAGTTTTCCTGACGACATCAACCGAAACATGATTTTCAAACAACTGCTCCTCGCTTCACTGATCATTGGAACCGTTTTGGCAAAGGATAAGGAATGGGATGATTATACGGATGAGGAGAAACGAAATGCTTCAGTCGGTCTGATCMTCATTATTGTGGTTGGAGTGCTCATTTGTATCAGTGTCAGTGCAGCGGCTGGATTCTTTTACATGATGCGAAAGAGGAATAGCAATAATGGAGGAGTGATGGTGGTGCATTAAGGATTCGGACATATAAGTGAACTTGAATAAAATGATATAAAAATTACAAATTTTATTCAAAGTAAAATTACAATGTTATTCAAAGTTCATGAAAGGTTCTCTCAACATGAAAACACAAAATCGATTTCCGGAAACCAAAATACAAAATTTATAAAATTTTGATATTCTAAAATACACTTTTTGAAAAATCGACAGATAAGAAGAAACGGATTTTTTTTACCTAATTATTTTCCCGCTTGGTTTTTTGACGAAACCTCAGATTGGGCCAATTTTCAAAAAGTTTCTTAATCAGTTAACTGTGTTAGAAGTATCAGGTTGCGTACTAAATTTTGTCATCACCAATTTTTCAAAAAAAAAACAGATTTTTCGAGAAATTTATGAAAATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>505 414 81</canonical_bands>
                <polymorphic_bands>586 414</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTTCAAACAACTGCTCCT</pcr_primer_p1>
		<pcr_primer_p2>TCACTTATATGTCCGAATCCTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATTTTCAAACAACTGCTCCTCGCTTCACTGATCATTGGAACCGTTTTGGCAAAGGATAAGGAATGGGATGATTATACGGATGAGGAGAAACGAAATGCTTCAGTCGGTCTGATCATCATTATTGTGGTTGGAGTGCTCATTTGTATCAGTGTCAGTGCAGCGGCTGGATTCTTTTACATGATGCGAAAGAGGAATAGCAATAATGGAGGAGTGATGGTGGTGCATTAAGGATTCGGACATATAAGTGA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTCAAACAACTGCTCCTCGCTTCACTGATCATTGGAACCGTTTTGGCAAAGGATAAGGAATGGGATGATTATACGGATGAGGAGAAACGAAATGCTTCAGTCGGTCTGATCMTCATTATTGTGGTTGGAGTGCTCATTTGTATCAGTGTCAGTGCAGCGGCTGGATTCTTTTACATGATGCGAAAGAGGAATAGCAATAATGGAGGAGTGATGGTGGTGCATTAAGGATTCGGACATATAAGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31219</snp_id>
        <super_contig>c005900780.Contig1</super_contig>
        <contig_pos>16996</contig_pos>
        <strand>+</strand>
        <context>ATGCAGCTGC[A/T]GAYACAAATG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATATCCACAAAGAAGACCTATCAAGTTTGTAAAAGAGGACATGCAGCTGC</left_flank>
        <right_flank>GACACAAATGAAACAGGCGGTCCATGACAATCTGAATCCATTCTTAGGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATAATATCTGGATTCTGGCCAAGTGAAGATGGATCAATGCCGTTGGATGAACCAATTTGTGGATATCGAGGACAGAGGTAGGACAGATTTGTAAATAGTTCATCATCCACACAAATCTTGATGTTTGCAGATGCAGTTACTTATTAGAAATCAGCGTCGGATCTCTTATAGTCTTATTGCTCATCATTTCTGTTGCATTCTTTTTCCTTTTCCGTTATTGGTTGGTTCTAAAAAAACCCATTCTTTTCTAAATTCTCATTTTAGTGAAAACCGTCAATTGGAAAAAATGCCCTGGCGAATTTTCCACGATGATTTGCAATTCATAGATGAAGAACAAGTTCGTTCGATGATGTCGGTTGGATCAGTGACAACGAAGCTGAGCAATATGCAAACGGGACAGAAGCAACATGCGATTATTGGAGTTAATACACATTCAACCTACCATAAATATCCACAAAGAAGACCTATCAAGTTTGTAAAAGAGGACATGCAGCTGCTGACACAAATGAAACAGGCGGTCCATGACAATCTGAATCCATTCTTAGGAGTTGCTTTCAATGAAAAAGAGGAGATGTTGGTACTGTGGAAGTTTTGTAGCAGAGGAACAATTCAAGACATCATCTACAATATGAATGTGGTTTTGGACGAAAAATTCCATGGAGCATTTGTCAGAGATATCACTTTAGTGAGTTTGAGCTAATTTAATTTAATTTAATTTATTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCAATGAAACTAGGAGATATAACAGGGACATACATTTGTATTAAATGGGAGATGGAGGAAAAACCGAGTTAGTAATTAGTTGAATTCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACGAGGGCTTCGCCGGGAACACTTTGGTGGGTAAAGAGTTCCAACATCTGATTACTCTATTAGAGAGAAATTGAGAAGATATTTTTGTTGAGTTT</canonical>
            <polymorphic>ACATAATATCTGGATTCTGGCCAAGTGAAGATGGATCAATGCCGTTGGATGAACCAATTTGTGGATATCGAGGACAGAGGTAGGACAGATTTGTAAATAGTTCATCATCCACACAAATCTTGATGTTTGCAGATGCAGTTACTTATTAGAAATCAGCGTCGGATCTCTTATAGTCTTATTGCTCATCATTTCTGTTGCATTCTTTTTCCTTTTCCGTTATTGGTTGGTTCTAAAAAAACCCATTCTTTTCTAAATTCTCATTTTAGTGAAAACCGTCAATTGGAAAAAATGCCCTGGCGAATTTTCCACGATGATTTGCAATTCATAGATGAAGAACAAGTTCGTTCGATGATGTCGGTTGGATCAGTGACAACGAAGCTGAGCAATATGCAAACGGGACAGAAGCAACATGCGATTATTGGAGTTAATACACATTCAACCTACCATAAATATCCACAAAGAAGACCTATCAAGTTTGTAAAAGAGGACATGCAGCTGCWGACACAAATGAAACAGGCGGTCCATGACAATCTGAATCCATTCTTAGGAGTTGCTTTCAATGAAAAAGAGGAGATGTTGGTACTGTGGAAGTTTTGTAGCAGAGGAACAATTCAAGACATCATCTACAATATGAATGTGGTTTTGGACGAAAAATTCCATGGAGCATTTGTCAGAGATATCACTTTAGTGAGTTTGAGCTAATTTAATTTAATTTAATTTATTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCAATGAAACTAGGAGATATAACAGGGACATACATTTGTATTAAATGGGAGATGGAGGAAAAACCGAGTTAGTAATTAGTTGAATTCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACGAGGGCTTCGCCGGGAACACTTTGGTGGGTAAAGAGTTCCAACATCTGATTACTCTATTAGAGAGAAATTGAGAAGATATTTTTGTTGAGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAGNNNCTG</site>
                <isoschizomers>
                    <enzyme>AlwNI</enzyme>
                    <enzyme>CaiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTGCAATTCATAGATGAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCATTGAAAGCAACTCCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTGCAATTCATAGATGAAGAACAAGTTCGTTCGATGATGTCGGTTGGATCAGTGACAACGAAGCTGAGCAATATGCAAACGGGACAGAAGCAACATGCGATTATTGGAGTTAATACACATTCAACCTACCATAAATATCCACAAAGAAGACCTATCAAGTTTGTAAAAGAGGACATGCAGCTGCTGACACAAATGAAACAGGCGGTCCATGACAATCTGAATCCATTCTTAGGAGTTGCTTTCAATGA</canonical_amplicon>
		<polymorphic_amplicon>ATTTGCAATTCATAGATGAAGAACAAGTTCGTTCGATGATGTCGGTTGGATCAGTGACAACGAAGCTGAGCAATATGCAAACGGGACAGAAGCAACATGCGATTATTGGAGTTAATACACATTCAACCTACCATAAATATCCACAAAGAAGACCTATCAAGTTTGTAAAAGAGGACATGCAGCTGCWGACACAAATGAAACAGGCGGTCCATGACAATCTGAATCCATTCTTAGGAGTTGCTTTCAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31220</snp_id>
        <super_contig>c005900780.Contig1</super_contig>
        <contig_pos>16999</contig_pos>
        <strand>+</strand>
        <context>CAGCTGCWGA[C/T]ACAAATGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCACAAAGAAGACCTATCAAGTTTGTAAAAGAGGACATGCAGCTGCTGA</left_flank>
        <right_flank>ACAAATGAAACAGGCGGTCCATGACAATCTGAATCCATTCTTAGGAGTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATATCTGGATTCTGGCCAAGTGAAGATGGATCAATGCCGTTGGATGAACCAATTTGTGGATATCGAGGACAGAGGTAGGACAGATTTGTAAATAGTTCATCATCCACACAAATCTTGATGTTTGCAGATGCAGTTACTTATTAGAAATCAGCGTCGGATCTCTTATAGTCTTATTGCTCATCATTTCTGTTGCATTCTTTTTCCTTTTCCGTTATTGGTTGGTTCTAAAAAAACCCATTCTTTTCTAAATTCTCATTTTAGTGAAAACCGTCAATTGGAAAAAATGCCCTGGCGAATTTTCCACGATGATTTGCAATTCATAGATGAAGAACAAGTTCGTTCGATGATGTCGGTTGGATCAGTGACAACGAAGCTGAGCAATATGCAAACGGGACAGAAGCAACATGCGATTATTGGAGTTAATACACATTCAACCTACCATAAATATCCACAAAGAAGACCTATCAAGTTTGTAAAAGAGGACATGCAGCTGCTGACACAAATGAAACAGGCGGTCCATGACAATCTGAATCCATTCTTAGGAGTTGCTTTCAATGAAAAAGAGGAGATGTTGGTACTGTGGAAGTTTTGTAGCAGAGGAACAATTCAAGACATCATCTACAATATGAATGTGGTTTTGGACGAAAAATTCCATGGAGCATTTGTCAGAGATATCACTTTAGTGAGTTTGAGCTAATTTAATTTAATTTAATTTATTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCAATGAAACTAGGAGATATAACAGGGACATACATTTGTATTAAATGGGAGATGGAGGAAAAACCGAGTTAGTAATTAGTTGAATTCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACGAGGGCTTCGCCGGGAACACTTTGGTGGGTAAAGAGTTCCAACATCTGATTACTCTATTAGAGAGAAATTGAGAAGATATTTTTGTTGAGTTTTTG</canonical>
            <polymorphic>TAATATCTGGATTCTGGCCAAGTGAAGATGGATCAATGCCGTTGGATGAACCAATTTGTGGATATCGAGGACAGAGGTAGGACAGATTTGTAAATAGTTCATCATCCACACAAATCTTGATGTTTGCAGATGCAGTTACTTATTAGAAATCAGCGTCGGATCTCTTATAGTCTTATTGCTCATCATTTCTGTTGCATTCTTTTTCCTTTTCCGTTATTGGTTGGTTCTAAAAAAACCCATTCTTTTCTAAATTCTCATTTTAGTGAAAACCGTCAATTGGAAAAAATGCCCTGGCGAATTTTCCACGATGATTTGCAATTCATAGATGAAGAACAAGTTCGTTCGATGATGTCGGTTGGATCAGTGACAACGAAGCTGAGCAATATGCAAACGGGACAGAAGCAACATGCGATTATTGGAGTTAATACACATTCAACCTACCATAAATATCCACAAAGAAGACCTATCAAGTTTGTAAAAGAGGACATGCAGCTGCTGAYACAAATGAAACAGGCGGTCCATGACAATCTGAATCCATTCTTAGGAGTTGCTTTCAATGAAAAAGAGGAGATGTTGGTACTGTGGAAGTTTTGTAGCAGAGGAACAATTCAAGACATCATCTACAATATGAATGTGGTTTTGGACGAAAAATTCCATGGAGCATTTGTCAGAGATATCACTTTAGTGAGTTTGAGCTAATTTAATTTAATTTAATTTATTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCAATGAAACTAGGAGATATAACAGGGACATACATTTGTATTAAATGGGAGATGGAGGAAAAACCGAGTTAGTAATTAGTTGAATTCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACGAGGGCTTCGCCGGGAACACTTTGGTGGGTAAAGAGTTCCAACATCTGATTACTCTATTAGAGAGAAATTGAGAAGATATTTTTGTTGAGTTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>155 116 83 69 63 61 58 52 52 48 48 43 40 36 24 24 8 8 6 4 2</canonical_bands>
                <polymorphic_bands>155 131 116 69 63 61 58 52 52 48 43 40 36 24 24 8 8 6 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTGCAATTCATAGATGAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCATTGAAAGCAACTCCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTGCAATTCATAGATGAAGAACAAGTTCGTTCGATGATGTCGGTTGGATCAGTGACAACGAAGCTGAGCAATATGCAAACGGGACAGAAGCAACATGCGATTATTGGAGTTAATACACATTCAACCTACCATAAATATCCACAAAGAAGACCTATCAAGTTTGTAAAAGAGGACATGCAGCTGCTGACACAAATGAAACAGGCGGTCCATGACAATCTGAATCCATTCTTAGGAGTTGCTTTCAATGA</canonical_amplicon>
		<polymorphic_amplicon>ATTTGCAATTCATAGATGAAGAACAAGTTCGTTCGATGATGTCGGTTGGATCAGTGACAACGAAGCTGAGCAATATGCAAACGGGACAGAAGCAACATGCGATTATTGGAGTTAATACACATTCAACCTACCATAAATATCCACAAAGAAGACCTATCAAGTTTGTAAAAGAGGACATGCAGCTGCTGAYACAAATGAAACAGGCGGTCCATGACAATCTGAATCCATTCTTAGGAGTTGCTTTCAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31221</snp_id>
        <super_contig>c005900780.Contig1</super_contig>
        <contig_pos>17545</contig_pos>
        <strand>+</strand>
        <context>TGATCCAGCA[C/T]CTATACAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGATAAGTGATTTGAGTTAGTATTTGTGACGTCGCAATGATCCAGCA</left_flank>
        <right_flank>CTATACAAATATTTTCTGCTTCAGGTGTATTAAAACTCTTATTATTAATG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTGCTTTCAATGAAAAAGAGGAGATGTTGGTACTGTGGAAGTTTTGTAGCAGAGGAACAATTCAAGACATCATCTACAATATGAATGTGGTTTTGGACGAAAAATTCCATGGAGCATTTGTCAGAGATATCACTTTAGTGAGTTTGAGCTAATTTAATTTAATTTAATTTATTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCAATGAAACTAGGAGATATAACAGGGACATACATTTGTATTAAATGGGAGATGGAGGAAAAACCGAGTTAGTAATTAGTTGAATTCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACGAGGGCTTCGCCGGGAACACTTTGGTGGGTAAAGAGTTCCAACATCTGATTACTCTATTAGAGAGAAATTGAGAAGATATTTTTGTTGAGTTTTTGATAAGTGATTTGAGTTAGTATTTGTGACGTCGCAATGATCCAGCACCTATACAAATATTTTCTGCTTCAGGTGTATTAAAACTCTTATTATTAATGTTGTGGGGTAGATTTTAATTGTACAACTAAAAGTTCAGAAAACGGTGGTTCTCAGGGTTTGGAATATCTCCATGCATCACCAATTGGATATCATGGATCACTCACGCCTTGGTGCTGTCTTATCGATAGGAACTGGATGGTAAAGTTGTCGGATTACGGTATTGCTAATCCTTTGGAACGTTGGGAGAAGCAAGGAGCAATTAGTATCAATGTTGCGAAGGATTCGGATGATAAGAGCGAGGCTGCACAGACGACATGTAAAGAATACACATTCAAAATATTAGTTTATGATTCAACCTTCCAGCGATTCTCTACATGGCACCGGAGCTTCTGAAAAACAGAGAAACAAATAAGAGAAGAGGAGTGGATCAAACATGGGTGAAACAGTCAATGGCTAGACGACAAGCTGGAGATATCTATTCGTTTGGAATGGTCATGTATGAAATTTTA</canonical>
            <polymorphic>GTTGCTTTCAATGAAAAAGAGGAGATGTTGGTACTGTGGAAGTTTTGTAGCAGAGGAACAATTCAAGACATCATCTACAATATGAATGTGGTTTTGGACGAAAAATTCCATGGAGCATTTGTCAGAGATATCACTTTAGTGAGTTTGAGCTAATTTAATTTAATTTAATTTATTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCAATGAAACTAGGAGATATAACAGGGACATACATTTGTATTAAATGGGAGATGGAGGAAAAACCGAGTTAGTAATTAGTTGAATTCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACGAGGGCTTCGCCGGGAACACTTTGGTGGGTAAAGAGTTCCAACATCTGATTACTCTATTAGAGAGAAATTGAGAAGATATTTTTGTTGAGTTTTTGATAAGTGATTTGAGTTAGTATTTGTGACGTCGCAATGATCCAGCAYCTATACAAATATTTTCTGCTTCAGGTGTATTAAAACTCTTATTATTAATGTTGTGGGGTAGATTTTAATTGTACAACTAAAAGTTCAGAAAACGGTGGTTCTCAGGGTTTGGAATATCTCCATGCATCACCAATTGGATATCATGGATCACTCACGCCTTGGTGCTGTCTTATCGATAGGAACTGGATGGTAAAGTTGTCGGATTACGGTATTGCTAATCCTTTGGAACGTTGGGAGAAGCAAGGAGCAATTAGTATCAATGTTGCGAAGGATTCGGATGATAAGAGCGAGGCTGCACAGACGACATGTAAAGAATACACATTCAAAATATTAGTTTATGATTCAACCTTCCAGCGATTCTCTACATGGCACCGGAGCTTCTGAAAAACAGAGAAACAAATAAGAGAAGAGGAGTGGATCAAACATGGGTGAAACAGTCAATGGCTAGACGACAAGCTGGAGATATCTATTCGTTTGGAATGGTCATGTATGAAATTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>133 116 76 69 58 52 52 52 45 43 42 38 32 28 28 22 21 19 19 15 10 8 8 6 4 4</canonical_bands>
                <polymorphic_bands>133 116 76 69 58 52 52 52 47 45 43 42 38 32 28 22 21 19 15 10 8 8 6 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGGATAATAGTCGATTTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>TACAATTAAAATCTACCCCACAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGGATAATAGTCGATTTTTGAAAGCCGCTGACGAGGGCTTCGCCGGGAACACTTTGGTGGGTAAAGAGTTCCAACATCTGATTACTCTATTAGAGAGAAATTGAGAAGATATTTTTGTTGAGTTTTTGATAAGTGATTTGAGTTAGTATTTGTGACGTCGCAATGATCCAGCACCTATACAAATATTTTCTGCTTCAGGTGTATTAAAACTCTTATTATTAATGTTGTGGGGTAGATTTTAATTGTA</canonical_amplicon>
		<polymorphic_amplicon>CAGGATAATAGTCGATTTTTGAAAGCCGCTGACGAGGGCTTCGCCGGGAACACTTTGGTGGGTAAAGAGTTCCAACATCTGATTACTCTATTAGAGAGAAATTGAGAAGATATTTTTGTTGAGTTTTTGATAAGTGATTTGAGTTAGTATTTGTGACGTCGCAATGATCCAGCAYCTATACAAATATTTTCTGCTTCAGGTGTATTAAAACTCTTATTATTAATGTTGTGGGGTAGATTTTAATTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31222</snp_id>
        <super_contig>c005900842.Contig1</super_contig>
        <contig_pos>72575</contig_pos>
        <strand>+</strand>
        <context>CCGCTTCCCC[G/T]TCTGGCACKA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGTGCGCTCCATTGCGAATCGGCACGCGACGCGACCGCGCCGCTTCCCC</left_flank>
        <right_flank>TCTGGCACTAAATAGCACGACCGGACTTTGCAGTTTTTTCAACAATTCCT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTGAAAAATGCTTCAATTTCACAATATTTTCTATATGAAAACACGATTTTAGGCTCAAAAATCTGGAATTTCCGTCGATTTTCACATATAGAACACCCAGACCAGACTGTACGAACGGCAGACCGGTTTTGCTTGCGAAAATCAATACTTTTAGAAATTCCTCATGAAAAATGAGGGAACTGTTTTGAATAGTGTACAGCAATAGTAGAATTAGAAGAGAGAAATGAGGATTTTTTAGGTTTTCAGAGTTACAAAAAGTCTGGAAATGACTGAAAATTTTCGGTTTTTTGGGAGAAATCCGCATAAATTTTATATGCTACACATTTTAAAACGATAAAAAAATCATTTTGAGGTAATGGAACTCAAAAATTCTCGAAAAATCGATTCAATTTTATGGGAACTTTGCAAAAATTGTCCGAAAAAAAAGCACGAAGCACGGGTGTCGGAAAGTGCGCTCCATTGCGAATCGGCACGCGACGCGACCGCGCCGCTTCCCCGTCTGGCACTAAATAGCACGACCGGACTTTGCAGTTTTTTCAACAATTCCTGCCCAATTTCTCATCATTTTTTCGCGATTTTCAGCTATTTTCTCGAATTCCTCGCATTTTTCTTCACACTACCCGTTAATTTCGACAATTTCCGTCGAAAAAATGCCCAAAAAATCACTGATTTTCATCGGAACACCTCAAAAAACCTCCCTTGTTCCGGTATCGATTTATGCGCCGCCCGAGGGTATTCTAGGGGTTTCTAGCGATTTTTCTGTACAAAACGAGTGGTTTGGCGGTTTTTGGTGCCGAAAATTGGCCTAAAACATGGAATTTTCGCCTATTTTTGGGCATTTTTTCCAAAAAAAATCATGACGAAATAGGTGACACGTGGAACTTCCATATTGCGAGATGAGGTTCCAGGAGGCCTGGAGAGCGTGTTTTGAAGAGTTTTGAGCCTGAAAATTCGCTGAAAATCGAGTTTTTCAGTCCAGGAATTCCATTTTTCTCTAT</canonical>
            <polymorphic>TATTGAAAAATGCTTCAATTTCACAATATTTTCTATATGAAAACACGATTTTAGGCTCAAAAATCTGGAATTTCCGTCGATTTTCACATATAGAACACCCAGACCAGACTGTACGAACGGCAGACCGGTTTTGCTTGCGAAAATCAATACTTTTAGAAATTCCTCATGAAAAATGAGGGAACTGTTTTGAATAGTGTACAGCAATAGTAGAATTAGAAGAGAGAAATGAGGATTTTTTAGGTTTTCAGAGTTACAAAAAGTCTGGAAATGACTGAAAATTTTCGGTTTTTTGGGAGAAATCCGCATAAATTTTATATGCTACACATTTTAAAACGATAAAAAAATCATTTTGAGGTAATGGAACTCAAAAATTCTCGAAAAATCGATTCAATTTTATGGGAACTTTGCAAAAATTGTCCGAAAAAAAAGCACGAAGCACGGGTGTCGGAAAGTGCGCTCCATTGCGAATCGGCACGCGACGCGACCGCGCCGCTTCCCCKTCTGGCACTAAATAGCACGACCGGACTTTGCAGTTTTTTCAACAATTCCTGCCCAATTTCTCATCATTTTTTCGCGATTTTCAGCTATTTTCTCGAATTCCTCGCATTTTTCTTCACACTACCCGTTAATTTCGACAATTTCCGTCGAAAAAATGCCCAAAAAATCACTGATTTTCATCGGAACACCTCAAAAAACCTCCCTTGTTCCGGTATCGATTTATGCGCCGCCCGAGGGTATTCTAGGGGTTTCTAGCGATTTTTCTGTACAAAACGAGTGGTTTGGCGGTTTTTGGTGCCGAAAATTGGCCTAAAACATGGAATTTTCGCCTATTTTTGGGCATTTTTTCCAAAAAAAATCATGACGAAATAGGTGACACGTGGAACTTCCATATTGCGAGATGAGGTTCCAGGAGGCCTGGAGAGCGTGTTTTGAAGAGTTTTGAGCCTGAAAATTCGCTGAAAATCGAGTTTTTCAGTCCAGGAATTCCATTTTTCTCTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGTAATGGAACTCAAAAATTC</pcr_primer_p1>
		<pcr_primer_p2>AATTCGAGAAAATAGCTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAGGTAATGGAACTCAAAAATTCTCGAAAAATCGATTCAATTTTATGGGAACTTTGCAAAAATTGTCCGAAAAAAAAGCACGAAGCACGGGTGTCGGAAAGTGCGCTCCATTGCGAATCGGCACGCGACGCGACCGCGCCGCTTCCCCGTCTGGCACTAAATAGCACGACCGGACTTTGCAGTTTTTTCAACAATTCCTGCCCAATTTCTCATCATTTTTTCGCGATTTTCAGCTATTTTCTCGAATT</canonical_amplicon>
		<polymorphic_amplicon>GAGGTAATGGAACTCAAAAATTCTCGAAAAATCGATTCAATTTTATGGGAACTTTGCAAAAATTGTCCGAAAAAAAAGCACGAAGCACGGGTGTCGGAAAGTGCGCTCCATTGCGAATCGGCACGCGACGCGACCGCGCCGCTTCCCCKTCTGGCACTAAATAGCACGACCGGACTTTGCAGTTTTTTCAACAATTCCTGCCCAATTTCTCATCATTTTTTCGCGATTTTCAGCTATTTTCTCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31223</snp_id>
        <super_contig>c005900842.Contig1</super_contig>
        <contig_pos>72584</contig_pos>
        <strand>+</strand>
        <context>CKTCTGGCAC[G/T]AAATAGCACG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCATTGCGAATCGGCACGCGACGCGACCGCGCCGCTTCCCCGTCTGGCAC</left_flank>
        <right_flank>AAATAGCACGACCGGACTTTGCAGTTTTTTCAACAATTCCTGCCCAATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCTTCAATTTCACAATATTTTCTATATGAAAACACGATTTTAGGCTCAAAAATCTGGAATTTCCGTCGATTTTCACATATAGAACACCCAGACCAGACTGTACGAACGGCAGACCGGTTTTGCTTGCGAAAATCAATACTTTTAGAAATTCCTCATGAAAAATGAGGGAACTGTTTTGAATAGTGTACAGCAATAGTAGAATTAGAAGAGAGAAATGAGGATTTTTTAGGTTTTCAGAGTTACAAAAAGTCTGGAAATGACTGAAAATTTTCGGTTTTTTGGGAGAAATCCGCATAAATTTTATATGCTACACATTTTAAAACGATAAAAAAATCATTTTGAGGTAATGGAACTCAAAAATTCTCGAAAAATCGATTCAATTTTATGGGAACTTTGCAAAAATTGTCCGAAAAAAAAGCACGAAGCACGGGTGTCGGAAAGTGCGCTCCATTGCGAATCGGCACGCGACGCGACCGCGCCGCTTCCCCGTCTGGCACTAAATAGCACGACCGGACTTTGCAGTTTTTTCAACAATTCCTGCCCAATTTCTCATCATTTTTTCGCGATTTTCAGCTATTTTCTCGAATTCCTCGCATTTTTCTTCACACTACCCGTTAATTTCGACAATTTCCGTCGAAAAAATGCCCAAAAAATCACTGATTTTCATCGGAACACCTCAAAAAACCTCCCTTGTTCCGGTATCGATTTATGCGCCGCCCGAGGGTATTCTAGGGGTTTCTAGCGATTTTTCTGTACAAAACGAGTGGTTTGGCGGTTTTTGGTGCCGAAAATTGGCCTAAAACATGGAATTTTCGCCTATTTTTGGGCATTTTTTCCAAAAAAAATCATGACGAAATAGGTGACACGTGGAACTTCCATATTGCGAGATGAGGTTCCAGGAGGCCTGGAGAGCGTGTTTTGAAGAGTTTTGAGCCTGAAAATTCGCTGAAAATCGAGTTTTTCAGTCCAGGAATTCCATTTTTCTCTATTTTCACCAA</canonical>
            <polymorphic>ATGCTTCAATTTCACAATATTTTCTATATGAAAACACGATTTTAGGCTCAAAAATCTGGAATTTCCGTCGATTTTCACATATAGAACACCCAGACCAGACTGTACGAACGGCAGACCGGTTTTGCTTGCGAAAATCAATACTTTTAGAAATTCCTCATGAAAAATGAGGGAACTGTTTTGAATAGTGTACAGCAATAGTAGAATTAGAAGAGAGAAATGAGGATTTTTTAGGTTTTCAGAGTTACAAAAAGTCTGGAAATGACTGAAAATTTTCGGTTTTTTGGGAGAAATCCGCATAAATTTTATATGCTACACATTTTAAAACGATAAAAAAATCATTTTGAGGTAATGGAACTCAAAAATTCTCGAAAAATCGATTCAATTTTATGGGAACTTTGCAAAAATTGTCCGAAAAAAAAGCACGAAGCACGGGTGTCGGAAAGTGCGCTCCATTGCGAATCGGCACGCGACGCGACCGCGCCGCTTCCCCGTCTGGCACKAAATAGCACGACCGGACTTTGCAGTTTTTTCAACAATTCCTGCCCAATTTCTCATCATTTTTTCGCGATTTTCAGCTATTTTCTCGAATTCCTCGCATTTTTCTTCACACTACCCGTTAATTTCGACAATTTCCGTCGAAAAAATGCCCAAAAAATCACTGATTTTCATCGGAACACCTCAAAAAACCTCCCTTGTTCCGGTATCGATTTATGCGCCGCCCGAGGGTATTCTAGGGGTTTCTAGCGATTTTTCTGTACAAAACGAGTGGTTTGGCGGTTTTTGGTGCCGAAAATTGGCCTAAAACATGGAATTTTCGCCTATTTTTGGGCATTTTTTCCAAAAAAAATCATGACGAAATAGGTGACACGTGGAACTTCCATATTGCGAGATGAGGTTCCAGGAGGCCTGGAGAGCGTGTTTTGAAGAGTTTTGAGCCTGAAAATTCGCTGAAAATCGAGTTTTTCAGTCCAGGAATTCCATTTTTCTCTATTTTCACCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGTAATGGAACTCAAAAATTC</pcr_primer_p1>
		<pcr_primer_p2>AATTCGAGAAAATAGCTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAGGTAATGGAACTCAAAAATTCTCGAAAAATCGATTCAATTTTATGGGAACTTTGCAAAAATTGTCCGAAAAAAAAGCACGAAGCACGGGTGTCGGAAAGTGCGCTCCATTGCGAATCGGCACGCGACGCGACCGCGCCGCTTCCCCGTCTGGCACTAAATAGCACGACCGGACTTTGCAGTTTTTTCAACAATTCCTGCCCAATTTCTCATCATTTTTTCGCGATTTTCAGCTATTTTCTCGAATT</canonical_amplicon>
		<polymorphic_amplicon>GAGGTAATGGAACTCAAAAATTCTCGAAAAATCGATTCAATTTTATGGGAACTTTGCAAAAATTGTCCGAAAAAAAAGCACGAAGCACGGGTGTCGGAAAGTGCGCTCCATTGCGAATCGGCACGCGACGCGACCGCGCCGCTTCCCCGTCTGGCACKAAATAGCACGACCGGACTTTGCAGTTTTTTCAACAATTCCTGCCCAATTTCTCATCATTTTTTCGCGATTTTCAGCTATTTTCTCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31224</snp_id>
        <super_contig>c005900842.Contig1</super_contig>
        <contig_pos>72624</contig_pos>
        <strand>+</strand>
        <context>TCAACAATTC[C/T]TRCCCAATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTCTGGCACTAAATAGCACGACCGGACTTTGCAGTTTTTTCAACAATTC</left_flank>
        <right_flank>TGCCCAATTTCTCATCATTTTTTCGCGATTTTCAGCTATTTTCTCGAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAGGCTCAAAAATCTGGAATTTCCGTCGATTTTCACATATAGAACACCCAGACCAGACTGTACGAACGGCAGACCGGTTTTGCTTGCGAAAATCAATACTTTTAGAAATTCCTCATGAAAAATGAGGGAACTGTTTTGAATAGTGTACAGCAATAGTAGAATTAGAAGAGAGAAATGAGGATTTTTTAGGTTTTCAGAGTTACAAAAAGTCTGGAAATGACTGAAAATTTTCGGTTTTTTGGGAGAAATCCGCATAAATTTTATATGCTACACATTTTAAAACGATAAAAAAATCATTTTGAGGTAATGGAACTCAAAAATTCTCGAAAAATCGATTCAATTTTATGGGAACTTTGCAAAAATTGTCCGAAAAAAAAGCACGAAGCACGGGTGTCGGAAAGTGCGCTCCATTGCGAATCGGCACGCGACGCGACCGCGCCGCTTCCCCGTCTGGCACTAAATAGCACGACCGGACTTTGCAGTTTTTTCAACAATTCCTGCCCAATTTCTCATCATTTTTTCGCGATTTTCAGCTATTTTCTCGAATTCCTCGCATTTTTCTTCACACTACCCGTTAATTTCGACAATTTCCGTCGAAAAAATGCCCAAAAAATCACTGATTTTCATCGGAACACCTCAAAAAACCTCCCTTGTTCCGGTATCGATTTATGCGCCGCCCGAGGGTATTCTAGGGGTTTCTAGCGATTTTTCTGTACAAAACGAGTGGTTTGGCGGTTTTTGGTGCCGAAAATTGGCCTAAAACATGGAATTTTCGCCTATTTTTGGGCATTTTTTCCAAAAAAAATCATGACGAAATAGGTGACACGTGGAACTTCCATATTGCGAGATGAGGTTCCAGGAGGCCTGGAGAGCGTGTTTTGAAGAGTTTTGAGCCTGAAAATTCGCTGAAAATCGAGTTTTTCAGTCCAGGAATTCCATTTTTCTCTATTTTCACCAATTCCTTGATATCCTTTCGAATTGTTTGGAATTTTCAGTAT</canonical>
            <polymorphic>TTTAGGCTCAAAAATCTGGAATTTCCGTCGATTTTCACATATAGAACACCCAGACCAGACTGTACGAACGGCAGACCGGTTTTGCTTGCGAAAATCAATACTTTTAGAAATTCCTCATGAAAAATGAGGGAACTGTTTTGAATAGTGTACAGCAATAGTAGAATTAGAAGAGAGAAATGAGGATTTTTTAGGTTTTCAGAGTTACAAAAAGTCTGGAAATGACTGAAAATTTTCGGTTTTTTGGGAGAAATCCGCATAAATTTTATATGCTACACATTTTAAAACGATAAAAAAATCATTTTGAGGTAATGGAACTCAAAAATTCTCGAAAAATCGATTCAATTTTATGGGAACTTTGCAAAAATTGTCCGAAAAAAAAGCACGAAGCACGGGTGTCGGAAAGTGCGCTCCATTGCGAATCGGCACGCGACGCGACCGCGCCGCTTCCCCGTCTGGCACTAAATAGCACGACCGGACTTTGCAGTTTTTTCAACAATTCYTGCCCAATTTCTCATCATTTTTTCGCGATTTTCAGCTATTTTCTCGAATTCCTCGCATTTTTCTTCACACTACCCGTTAATTTCGACAATTTCCGTCGAAAAAATGCCCAAAAAATCACTGATTTTCATCGGAACACCTCAAAAAACCTCCCTTGTTCCGGTATCGATTTATGCGCCGCCCGAGGGTATTCTAGGGGTTTCTAGCGATTTTTCTGTACAAAACGAGTGGTTTGGCGGTTTTTGGTGCCGAAAATTGGCCTAAAACATGGAATTTTCGCCTATTTTTGGGCATTTTTTCCAAAAAAAATCATGACGAAATAGGTGACACGTGGAACTTCCATATTGCGAGATGAGGTTCCAGGAGGCCTGGAGAGCGTGTTTTGAAGAGTTTTGAGCCTGAAAATTCGCTGAAAATCGAGTTTTTCAGTCCAGGAATTCCATTTTTCTCTATTTTCACCAATTCCTTGATATCCTTTCGAATTGTTTGGAATTTTCAGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCAATTTTATGGGAACTTTG</pcr_primer_p1>
		<pcr_primer_p2>GAAATTAACGGGTAGTGTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTCAATTTTATGGGAACTTTGCAAAAATTGTCCGAAAAAAAAGCACGAAGCACGGGTGTCGGAAAGTGCGCTCCATTGCGAATCGGCACGCGACGCGACCGCGCCGCTTCCCCGTCTGGCACTAAATAGCACGACCGGACTTTGCAGTTTTTTCAACAATTCCTGCCCAATTTCTCATCATTTTTTCGCGATTTTCAGCTATTTTCTCGAATTCCTCGCATTTTTCTTCACACTACCCGTTAATTTC</canonical_amplicon>
		<polymorphic_amplicon>ATTCAATTTTATGGGAACTTTGCAAAAATTGTCCGAAAAAAAAGCACGAAGCACGGGTGTCGGAAAGTGCGCTCCATTGCGAATCGGCACGCGACGCGACCGCGCCGCTTCCCCGTCTGGCACTAAATAGCACGACCGGACTTTGCAGTTTTTTCAACAATTCYTGCCCAATTTCTCATCATTTTTTCGCGATTTTCAGCTATTTTCTCGAATTCCTCGCATTTTTCTTCACACTACCCGTTAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31225</snp_id>
        <super_contig>c005900842.Contig1</super_contig>
        <contig_pos>72626</contig_pos>
        <strand>+</strand>
        <context>AACAATTCYT[A/G]CCCAATTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGGCACTAAATAGCACGACCGGACTTTGCAGTTTTTTCAACAATTCCT</left_flank>
        <right_flank>CCCAATTTCTCATCATTTTTTCGCGATTTTCAGCTATTTTCTCGAATTCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGCTCAAAAATCTGGAATTTCCGTCGATTTTCACATATAGAACACCCAGACCAGACTGTACGAACGGCAGACCGGTTTTGCTTGCGAAAATCAATACTTTTAGAAATTCCTCATGAAAAATGAGGGAACTGTTTTGAATAGTGTACAGCAATAGTAGAATTAGAAGAGAGAAATGAGGATTTTTTAGGTTTTCAGAGTTACAAAAAGTCTGGAAATGACTGAAAATTTTCGGTTTTTTGGGAGAAATCCGCATAAATTTTATATGCTACACATTTTAAAACGATAAAAAAATCATTTTGAGGTAATGGAACTCAAAAATTCTCGAAAAATCGATTCAATTTTATGGGAACTTTGCAAAAATTGTCCGAAAAAAAAGCACGAAGCACGGGTGTCGGAAAGTGCGCTCCATTGCGAATCGGCACGCGACGCGACCGCGCCGCTTCCCCGTCTGGCACTAAATAGCACGACCGGACTTTGCAGTTTTTTCAACAATTCCTGCCCAATTTCTCATCATTTTTTCGCGATTTTCAGCTATTTTCTCGAATTCCTCGCATTTTTCTTCACACTACCCGTTAATTTCGACAATTTCCGTCGAAAAAATGCCCAAAAAATCACTGATTTTCATCGGAACACCTCAAAAAACCTCCCTTGTTCCGGTATCGATTTATGCGCCGCCCGAGGGTATTCTAGGGGTTTCTAGCGATTTTTCTGTACAAAACGAGTGGTTTGGCGGTTTTTGGTGCCGAAAATTGGCCTAAAACATGGAATTTTCGCCTATTTTTGGGCATTTTTTCCAAAAAAAATCATGACGAAATAGGTGACACGTGGAACTTCCATATTGCGAGATGAGGTTCCAGGAGGCCTGGAGAGCGTGTTTTGAAGAGTTTTGAGCCTGAAAATTCGCTGAAAATCGAGTTTTTCAGTCCAGGAATTCCATTTTTCTCTATTTTCACCAATTCCTTGATATCCTTTCGAATTGTTTGGAATTTTCAGTATAA</canonical>
            <polymorphic>TAGGCTCAAAAATCTGGAATTTCCGTCGATTTTCACATATAGAACACCCAGACCAGACTGTACGAACGGCAGACCGGTTTTGCTTGCGAAAATCAATACTTTTAGAAATTCCTCATGAAAAATGAGGGAACTGTTTTGAATAGTGTACAGCAATAGTAGAATTAGAAGAGAGAAATGAGGATTTTTTAGGTTTTCAGAGTTACAAAAAGTCTGGAAATGACTGAAAATTTTCGGTTTTTTGGGAGAAATCCGCATAAATTTTATATGCTACACATTTTAAAACGATAAAAAAATCATTTTGAGGTAATGGAACTCAAAAATTCTCGAAAAATCGATTCAATTTTATGGGAACTTTGCAAAAATTGTCCGAAAAAAAAGCACGAAGCACGGGTGTCGGAAAGTGCGCTCCATTGCGAATCGGCACGCGACGCGACCGCGCCGCTTCCCCGTCTGGCACTAAATAGCACGACCGGACTTTGCAGTTTTTTCAACAATTCCTRCCCAATTTCTCATCATTTTTTCGCGATTTTCAGCTATTTTCTCGAATTCCTCGCATTTTTCTTCACACTACCCGTTAATTTCGACAATTTCCGTCGAAAAAATGCCCAAAAAATCACTGATTTTCATCGGAACACCTCAAAAAACCTCCCTTGTTCCGGTATCGATTTATGCGCCGCCCGAGGGTATTCTAGGGGTTTCTAGCGATTTTTCTGTACAAAACGAGTGGTTTGGCGGTTTTTGGTGCCGAAAATTGGCCTAAAACATGGAATTTTCGCCTATTTTTGGGCATTTTTTCCAAAAAAAATCATGACGAAATAGGTGACACGTGGAACTTCCATATTGCGAGATGAGGTTCCAGGAGGCCTGGAGAGCGTGTTTTGAAGAGTTTTGAGCCTGAAAATTCGCTGAAAATCGAGTTTTTCAGTCCAGGAATTCCATTTTTCTCTATTTTCACCAATTCCTTGATATCCTTTCGAATTGTTTGGAATTTTCAGTATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCAATTTTATGGGAACTTTG</pcr_primer_p1>
		<pcr_primer_p2>GAAATTAACGGGTAGTGTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTCAATTTTATGGGAACTTTGCAAAAATTGTCCGAAAAAAAAGCACGAAGCACGGGTGTCGGAAAGTGCGCTCCATTGCGAATCGGCACGCGACGCGACCGCGCCGCTTCCCCGTCTGGCACTAAATAGCACGACCGGACTTTGCAGTTTTTTCAACAATTCCTGCCCAATTTCTCATCATTTTTTCGCGATTTTCAGCTATTTTCTCGAATTCCTCGCATTTTTCTTCACACTACCCGTTAATTTC</canonical_amplicon>
		<polymorphic_amplicon>ATTCAATTTTATGGGAACTTTGCAAAAATTGTCCGAAAAAAAAGCACGAAGCACGGGTGTCGGAAAGTGCGCTCCATTGCGAATCGGCACGCGACGCGACCGCGCCGCTTCCCCGTCTGGCACTAAATAGCACGACCGGACTTTGCAGTTTTTTCAACAATTCCTRCCCAATTTCTCATCATTTTTTCGCGATTTTCAGCTATTTTCTCGAATTCCTCGCATTTTTCTTCACACTACCCGTTAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31226</snp_id>
        <super_contig>c005900842.Contig1</super_contig>
        <contig_pos>73093</contig_pos>
        <strand>+</strand>
        <context>AATTCCTTGA[C/T]ATCCTTTCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTTTCAGTCCAGGAATTCCATTTTTCTCTATTTTCACCAATTCCTTGA</left_flank>
        <right_flank>ATCCTTTCGAATTGTTTGGAATTTTCAGTATAATTATCGAATTTCCAGTA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACCGGACTTTGCAGTTTTTTCAACAATTCCTGCCCAATTTCTCATCATTTTTTCGCGATTTTCAGCTATTTTCTCGAATTCCTCGCATTTTTCTTCACACTACCCGTTAATTTCGACAATTTCCGTCGAAAAAATGCCCAAAAAATCACTGATTTTCATCGGAACACCTCAAAAAACCTCCCTTGTTCCGGTATCGATTTATGCGCCGCCCGAGGGTATTCTAGGGGTTTCTAGCGATTTTTCTGTACAAAACGAGTGGTTTGGCGGTTTTTGGTGCCGAAAATTGGCCTAAAACATGGAATTTTCGCCTATTTTTGGGCATTTTTTCCAAAAAAAATCATGACGAAATAGGTGACACGTGGAACTTCCATATTGCGAGATGAGGTTCCAGGAGGCCTGGAGAGCGTGTTTTGAAGAGTTTTGAGCCTGAAAATTCGCTGAAAATCGAGTTTTTCAGTCCAGGAATTCCATTTTTCTCTATTTTCACCAATTCCTTGATATCCTTTCGAATTGTTTGGAATTTTCAGTATAATTATCGAATTTCCAGTATACTTTCACTTTTATACCAATACTGACCAAGTCTGTCTAGCCAATGTGTGCACTTGGAGAGACTAGGAAGGGTCAAGTTGTCACATTGGCAAACAAGTTCAAACGAAGGGGTAGCGACAGTTATAAACCATATATTCAAGTGTTGTTTGTTCCTTTAGCAGTGTGTCCTGATTATTAGAATTAGTGGGTGGTTTCTGTCGGAAATTTGCCATTTTCACTAGAAAAATTGGTGAAAATTATCGATTTTTAGCTTGGAAACCCTCAATTTTCGTTTTTTTTCAAGCCTAAGAGCCTGATTTTTGTGATATTTTCAGCTCAAAATTCAATATTTCTTCCAGAAAATTGAGAATTTTCTGAGATACCGTAATTCCTCTATTCACATTATAAACTACTACCCAGGCCGCCAACTTTGAGCTCAATTATCTCGATTTCTGTGATAGATATCAAAAT</canonical>
            <polymorphic>GACCGGACTTTGCAGTTTTTTCAACAATTCCTGCCCAATTTCTCATCATTTTTTCGCGATTTTCAGCTATTTTCTCGAATTCCTCGCATTTTTCTTCACACTACCCGTTAATTTCGACAATTTCCGTCGAAAAAATGCCCAAAAAATCACTGATTTTCATCGGAACACCTCAAAAAACCTCCCTTGTTCCGGTATCGATTTATGCGCCGCCCGAGGGTATTCTAGGGGTTTCTAGCGATTTTTCTGTACAAAACGAGTGGTTTGGCGGTTTTTGGTGCCGAAAATTGGCCTAAAACATGGAATTTTCGCCTATTTTTGGGCATTTTTTCCAAAAAAAATCATGACGAAATAGGTGACACGTGGAACTTCCATATTGCGAGATGAGGTTCCAGGAGGCCTGGAGAGCGTGTTTTGAAGAGTTTTGAGCCTGAAAATTCGCTGAAAATCGAGTTTTTCAGTCCAGGAATTCCATTTTTCTCTATTTTCACCAATTCCTTGAYATCCTTTCGAATTGTTTGGAATTTTCAGTATAATTATCGAATTTCCAGTATACTTTCACTTTTATACCAATACTGACCAAGTCTGTCTAGCCAATGTGTGCACTTGGAGAGACTAGGAAGGGTCAAGTTGTCACATTGGCAAACAAGTTCAAACGAAGGGGTAGCGACAGTTATAAACCATATATTCAAGTGTTGTTTGTTCCTTTAGCAGTGTGTCCTGATTATTAGAATTAGTGGGTGGTTTCTGTCGGAAATTTGCCATTTTCACTAGAAAAATTGGTGAAAATTATCGATTTTTAGCTTGGAAACCCTCAATTTTCGTTTTTTTTCAAGCCTAAGAGCCTGATTTTTGTGATATTTTCAGCTCAAAATTCAATATTTCTTCCAGAAAATTGAGAATTTTCTGAGATACCGTAATTCCTCTATTCACATTATAAACTACTACCCAGGCCGCCAACTTTGAGCTCAATTATCTCGATTTCTGTGATAGATATCAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>500 492 8</canonical_bands>
                <polymorphic_bands>992 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCATGACGAAATAGGTGACA</pcr_primer_p1>
		<pcr_primer_p2>GACAGACTTGGTCAGTATTGGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCATGACGAAATAGGTGACACGTGGAACTTCCATATTGCGAGATGAGGTTCCAGGAGGCCTGGAGAGCGTGTTTTGAAGAGTTTTGAGCCTGAAAATTCGCTGAAAATCGAGTTTTTCAGTCCAGGAATTCCATTTTTCTCTATTTTCACCAATTCCTTGATATCCTTTCGAATTGTTTGGAATTTTCAGTATAATTATCGAATTTCCAGTATACTTTCACTTTTATACCAATACTGACCAAGTCTGTC</canonical_amplicon>
		<polymorphic_amplicon>ATCATGACGAAATAGGTGACACGTGGAACTTCCATATTGCGAGATGAGGTTCCAGGAGGCCTGGAGAGCGTGTTTTGAAGAGTTTTGAGCCTGAAAATTCGCTGAAAATCGAGTTTTTCAGTCCAGGAATTCCATTTTTCTCTATTTTCACCAATTCCTTGAYATCCTTTCGAATTGTTTGGAATTTTCAGTATAATTATCGAATTTCCAGTATACTTTCACTTTTATACCAATACTGACCAAGTCTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31227</snp_id>
        <super_contig>c005900873.Contig1</super_contig>
        <contig_pos>19386</contig_pos>
        <strand>+</strand>
        <context>AAAAATAAAA[C/T]GATCGATGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGGGAAGCATTGAGCACCTGGGAAGATTCAGAATTGGTAAAAATAAAA</left_flank>
        <right_flank>GATCGATGCTCAGACCAGCTGTTCTTCTGAGCAACAAAAGTTCGCCCTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAAACATAGGCAGAATAGGTGACTGGAACTGATGGTACTGGAACGGATGGTACTGGTGGTGGTTGCTTCTGGATGACAGCATACTCGTTGTTCCTTGGAGCGCTGGTGTATCGAATCTCCTCCTCATCAACCTTCTTGACACTGTCTTCAATAGTGAACACCTTCTTGGGATCCACCAACAACATGGATTTAGCCTCTGGCATCGGATATGGTTCTGGGACAAGTCCTCGCGCCAACGCGTGCTCTCTTCTGGCGGTCCACGTGTATTTACAACATCCAATGATGATACAGACTCCGATGAAGATGCCAACGATGGAGTATATGGTTATAGAGTAGTCAGATGTGGTCGCGGTGATTTCTATGGATGGGGTGGAGGTGGTGGTGAGGGAGATCTCGCAGAATTCTCCGATGAAGCCGACAGAGCAGGCGCAGAAGACTTTGGGACCGTTTGGGAAGCATTGAGCACCTGGGAAGATTCAGAATTGGTAAAAATAAAACGATCGATGCTCAGACCAGCTGTTCTTCTGAGCAACAAAAGTTCGCCCTCTCTTCCCCTGAAAAAATGACTCACCATTCAGACACGCGTCTTTCACACTACAAGCATCTGGTCGTGGTGCAGTGAACTGGAATTGTGTGAAGCCGGGAATTTCGCACCTGGAGCCGGTGTATCCGTTGGCGCACTCGCAGATCAGTTGCTCGGTTGAGTTGGCTTTGAGCCCCGGGTTGTGGATCAGCGAGGAGGCGCAGACGCCATCGTTTTGGCAGGAGCATTTGCGAGGGTCCACGGCTGAAAGAAAAGTGTAACTAGAGGGAAGAGGGGCTGGGTCCATCCTAGAATGCCTATATTATAGTATCGTTGGAGTCACATATCATAGACATCCTACAGTAGACATTCTACAGTAAGATACAAAAACATTTTCAGAAGACCGGATCTCGGTTGTCAAGTGTTCGATCCCTCGGAAAATTTTGAAGGGTGTGAATCAGGCTTAGATTGAAAA</canonical>
            <polymorphic>TTCAAACATAGGCAGAATAGGTGACTGGAACTGATGGTACTGGAACGGATGGTACTGGTGGTGGTTGCTTCTGGATGACAGCATACTCGTTGTTCCTTGGAGCGCTGGTGTATCGAATCTCCTCCTCATCAACCTTCTTGACACTGTCTTCAATAGTGAACACCTTCTTGGGATCCACCAACAACATGGATTTAGCCTCTGGCATCGGATATGGTTCTGGGACAAGTCCTCGCGCCAACGCGTGCTCTCTTCTGGCGGTCCACGTGTATTTACAACATCCAATGATGATACAGACTCCGATGAAGATGCCAACGATGGAGTATATGGTTATAGAGTAGTCAGATGTGGTCGCGGTGATTTCTATGGATGGGGTGGAGGTGGTGGTGAGGGAGATCTCGCAGAATTCTCCGATGAAGCCGACAGAGCAGGCGCAGAAGACTTTGGGACCGTTTGGGAAGCATTGAGCACCTGGGAAGATTCAGAATTGGTAAAAATAAAAYGATCGATGCTCAGACCAGCTGTTCTTCTGAGCAACAAAAGTTCGCCCTCTCTTCCCCTGAAAAAATGACTCACCATTCAGACACGCGTCTTTCACACTACAAGCATCTGGTCGTGGTGCAGTGAACTGGAATTGTGTGAAGCCGGGAATTTCGCACCTGGAGCCGGTGTATCCGTTGGCGCACTCGCAGATCAGTTGCTCGGTTGAGTTGGCTTTGAGCCCCGGGTTGTGGATCAGCGAGGAGGCGCAGACGCCATCGTTTTGGCAGGAGCATTTGCGAGGGTCCACGGCTGAAAGAAAAGTGTAACTAGAGGGAAGAGGGGCTGGGTCCATCCTAGAATGCCTATATTATAGTATCGTTGGAGTCACATATCATAGACATCCTACAGTAGACATTCTACAGTAAGATACAAAAACATTTTCAGAAGACCGGATCTCGGTTGTCAAGTGTTCGATCCCTCGGAAAATTTTGAAGGGTGTGAATCAGGCTTAGATTGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CGATCG</site>
                <isoschizomers>
                    <enzyme>BspCI</enzyme>
                    <enzyme>Ple19I</enzyme>
                    <enzyme>PvuI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTATAGAGTAGTCAGATGTGGTC</pcr_primer_p1>
		<pcr_primer_p2>GTCTGAATGGTGAGTCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>GGTTATAGAGTAGTCAGATGTGGTCGCGGTGATTTCTATGGATGGGGTGGAGGTGGTGGTGAGGGAGATCTCGCAGAATTCTCCGATGAAGCCGACAGAGCAGGCGCAGAAGACTTTGGGACCGTTTGGGAAGCATTGAGCACCTGGGAAGATTCAGAATTGGTAAAAATAAAACGATCGATGCTCAGACCAGCTGTTCTTCTGAGCAACAAAAGTTCGCCCTCTCTTCCCCTGAAAAAATGACTCACCATTCAGAC</canonical_amplicon>
		<polymorphic_amplicon>GGTTATAGAGTAGTCAGATGTGGTCGCGGTGATTTCTATGGATGGGGTGGAGGTGGTGGTGAGGGAGATCTCGCAGAATTCTCCGATGAAGCCGACAGAGCAGGCGCAGAAGACTTTGGGACCGTTTGGGAAGCATTGAGCACCTGGGAAGATTCAGAATTGGTAAAAATAAAAYGATCGATGCTCAGACCAGCTGTTCTTCTGAGCAACAAAAGTTCGCCCTCTCTTCCCCTGAAAAAATGACTCACCATTCAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31228</snp_id>
        <super_contig>c005900873.Contig1</super_contig>
        <contig_pos>19429</contig_pos>
        <strand>+</strand>
        <context>AACAAAAGTT[C/T]GCCCTCTCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATAAAACGATCGATGCTCAGACCAGCTGTTCTTCTGAGCAACAAAAGTT</left_flank>
        <right_flank>GCCCTCTCTTCCCCTGAAAAAATGACTCACCATTCAGACACGCGTCTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGGATGGTACTGGTGGTGGTTGCTTCTGGATGACAGCATACTCGTTGTTCCTTGGAGCGCTGGTGTATCGAATCTCCTCCTCATCAACCTTCTTGACACTGTCTTCAATAGTGAACACCTTCTTGGGATCCACCAACAACATGGATTTAGCCTCTGGCATCGGATATGGTTCTGGGACAAGTCCTCGCGCCAACGCGTGCTCTCTTCTGGCGGTCCACGTGTATTTACAACATCCAATGATGATACAGACTCCGATGAAGATGCCAACGATGGAGTATATGGTTATAGAGTAGTCAGATGTGGTCGCGGTGATTTCTATGGATGGGGTGGAGGTGGTGGTGAGGGAGATCTCGCAGAATTCTCCGATGAAGCCGACAGAGCAGGCGCAGAAGACTTTGGGACCGTTTGGGAAGCATTGAGCACCTGGGAAGATTCAGAATTGGTAAAAATAAAACGATCGATGCTCAGACCAGCTGTTCTTCTGAGCAACAAAAGTTCGCCCTCTCTTCCCCTGAAAAAATGACTCACCATTCAGACACGCGTCTTTCACACTACAAGCATCTGGTCGTGGTGCAGTGAACTGGAATTGTGTGAAGCCGGGAATTTCGCACCTGGAGCCGGTGTATCCGTTGGCGCACTCGCAGATCAGTTGCTCGGTTGAGTTGGCTTTGAGCCCCGGGTTGTGGATCAGCGAGGAGGCGCAGACGCCATCGTTTTGGCAGGAGCATTTGCGAGGGTCCACGGCTGAAAGAAAAGTGTAACTAGAGGGAAGAGGGGCTGGGTCCATCCTAGAATGCCTATATTATAGTATCGTTGGAGTCACATATCATAGACATCCTACAGTAGACATTCTACAGTAAGATACAAAAACATTTTCAGAAGACCGGATCTCGGTTGTCAAGTGTTCGATCCCTCGGAAAATTTTGAAGGGTGTGAATCAGGCTTAGATTGAAAACTTTACATTTACAAAATTTTTCGGAAGTTTCTAGTTTTTCAGC</canonical>
            <polymorphic>AACGGATGGTACTGGTGGTGGTTGCTTCTGGATGACAGCATACTCGTTGTTCCTTGGAGCGCTGGTGTATCGAATCTCCTCCTCATCAACCTTCTTGACACTGTCTTCAATAGTGAACACCTTCTTGGGATCCACCAACAACATGGATTTAGCCTCTGGCATCGGATATGGTTCTGGGACAAGTCCTCGCGCCAACGCGTGCTCTCTTCTGGCGGTCCACGTGTATTTACAACATCCAATGATGATACAGACTCCGATGAAGATGCCAACGATGGAGTATATGGTTATAGAGTAGTCAGATGTGGTCGCGGTGATTTCTATGGATGGGGTGGAGGTGGTGGTGAGGGAGATCTCGCAGAATTCTCCGATGAAGCCGACAGAGCAGGCGCAGAAGACTTTGGGACCGTTTGGGAAGCATTGAGCACCTGGGAAGATTCAGAATTGGTAAAAATAAAACGATCGATGCTCAGACCAGCTGTTCTTCTGAGCAACAAAAGTTYGCCCTCTCTTCCCCTGAAAAAATGACTCACCATTCAGACACGCGTCTTTCACACTACAAGCATCTGGTCGTGGTGCAGTGAACTGGAATTGTGTGAAGCCGGGAATTTCGCACCTGGAGCCGGTGTATCCGTTGGCGCACTCGCAGATCAGTTGCTCGGTTGAGTTGGCTTTGAGCCCCGGGTTGTGGATCAGCGAGGAGGCGCAGACGCCATCGTTTTGGCAGGAGCATTTGCGAGGGTCCACGGCTGAAAGAAAAGTGTAACTAGAGGGAAGAGGGGCTGGGTCCATCCTAGAATGCCTATATTATAGTATCGTTGGAGTCACATATCATAGACATCCTACAGTAGACATTCTACAGTAAGATACAAAAACATTTTCAGAAGACCGGATCTCGGTTGTCAAGTGTTCGATCCCTCGGAAAATTTTGAAGGGTGTGAATCAGGCTTAGATTGAAAACTTTACATTTACAAAATTTTTCGGAAGTTTCTAGTTTTTCAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAGATTCAGAATTGGTAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTCACACAATTCCAGTTCAC</pcr_primer_p2>
		<pcr_amplicon_size>170</pcr_amplicon_size>
		<canonical_amplicon>GGAAGATTCAGAATTGGTAAAAATAAAACGATCGATGCTCAGACCAGCTGTTCTTCTGAGCAACAAAAGTTCGCCCTCTCTTCCCCTGAAAAAATGACTCACCATTCAGACACGCGTCTTTCACACTACAAGCATCTGGTCGTGGTGCAGTGAACTGGAATTGTGTGAAG</canonical_amplicon>
		<polymorphic_amplicon>GGAAGATTCAGAATTGGTAAAAATAAAACGATCGATGCTCAGACCAGCTGTTCTTCTGAGCAACAAAAGTTYGCCCTCTCTTCCCCTGAAAAAATGACTCACCATTCAGACACGCGTCTTTCACACTACAAGCATCTGGTCGTGGTGCAGTGAACTGGAATTGTGTGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31229</snp_id>
        <super_contig>c005900873.Contig1</super_contig>
        <contig_pos>21152</contig_pos>
        <strand></strand>
        <context>aaaattttta[T/C]cataaaatca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTCATTTCCTGTGAAAGATATCGAAAAGTGTTCAACTGATAAAATTTTTA</left_flank>
        <right_flank>CATAAAATCAAAAATATTTTATTGGTTAACATTTTTTCGATATCTTTCGC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGAGTTGTGGGAGAAGGGTTAGTAGTAGTAGGCTGCGCATTTTTCTGGAAATATAGATTTTTATAGATGAAAAGAGGGAAAACAAAGAAATGGAGAGGAAGAGGGGACCAATGGTCCGCGGGAGACCATCTATATGCGGTAAGACGAGGTGGTAATAGTAACCGGAAGAAAGAGAAGGTGGGGGAGTGTGTCTAATACGATGGGGTGAATGACAATGAAACACTCCACCCCTCGAGGGGGCGGGGCGAAAGGAAAACGAACACCTGTTGTTCTCTCTGCGTTCCCTGGGGGTGTGTACTATTTCTGCTTTAGTGATAGTCCAGAATTCGGAAACTTGTATTATCACTAACTTTGAAAAATCAAAGCGAAATCTGGCTCTGATAAGCCCAAATAACCTGATAAACCCATAAAATGACCCTTTTGACTTTTAACTTTGATTCAATTTATCTCATTTCCTGTGAAAGATATCGAAAAGTGTTCAACTGATAAAATTTTTATCATAAAATCAAAAATATTTTATTGGTTAACATTTTTTCGATATCTTTCGCAGGAAACGAGATACATTGGCTAGAGTGTTTAGGGCAAAAACAATCACCTAAAAAGGAAAAAAAAGAAGGACAGGAAGAAAAACTGGATTGCACCAGCACAAATGAATTGCTCAACTGGAAAAAAATTGGGACCTGAAAAATCGATGCCTTAAAATTATTCTCCTGTTTAGTACCTTTTATTCGAATATGCACATTTTGAATGGAGGTAAAAAGGGGAACACACAAAAGGAGCTTGTAAACGAAATTAGTATTGCTCTTATTCATGGTCTTGGCATCTAGAATAGTATAAGGGAGAGCTATAGAGCACAGAGATACAAAAATATTTTGAAAAATGGAAAAAATGCAGGTATTAACATAAAAAATACCGTAATACATGTAATAGAAGGACCTGCGACTTTTAACTTTGAGCTCATATATCTCGGTTACTGTAAAATATAAAAAAAATCTGTC</canonical>
            <polymorphic>GATGAGTTGTGGGAGAAGGGTTAGTAGTAGTAGGCTGCGCATTTTTCTGGAAATATAGATTTTTATAGATGAAAAGAGGGAAAACAAAGAAATGGAGAGGAAGAGGGGACCAATGGTCCGCGGGAGACCATCTATATGCGGTAAGACGAGGTGGTAATAGTAACCGGAAGAAAGAGAAGGTGGGGGAGTGTGTCTAATACGATGGGGTGAATGACAATGAAACACTCCACCCCTCGAGGGGGCGGGGCGAAAGGAAAACGAACACCTGTTGTTCTCTCTGCGTTCCCTGGGGGTGTGTACTATTTCTGCTTTAGTGATAGTCCAGAATTCGGAAACTTGTATTATCACTAACTTTGAAAAATCAAAGCGAAATCTGGCTCTGATAAGCCCAAATAACCTGATAAACCCATAAAATGACCCTTTTGACTTTTAACTTTGATTCAATTTATCTCATTTCCTGTGAAAGATATCGAAAAGTGTTCAACTGATAAAATTTTTAYCATAAAATCAAAAATATTTTATTGGTTAACATTTTTTCGATATCTTTCGCAGGAAACGAGATACATTGGCTAGAGTGTTTAGGGCAAAAACAATCACCTAAAAAGGAAAAAAAAGAAGGACAGGAAGAAAAACTGGATTGCACCAGCACAAATGAATTGCTCAACTGGAAAAAAATTGGGACCTGAAAAATCGATGCCTTAAAATTATTCTCCTGTTTAGTACCTTTTATTCGAATATGCACATTTTGAATGGAGGTAAAAAGGGGAACACACAAAAGGAGCTTGTAAACGAAATTAGTATTGCTCTTATTCATGGTCTTGGCATCTAGAATAGTATAAGGGAGAGCTATAGAGCACAGAGATACAAAAATATTTTGAAAAATGGAAAAAATGCAGGTATTAACATAAAAAATACCGTAATACATGTAATAGAAGGACCTGCGACTTTTAACTTTGAGCTCATATATCTCGGTTACTGTAAAATATAAAAAAAATCTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAGCCCAAATAACCTGATAAA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTCTTCCTGTCCTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATAAGCCCAAATAACCTGATAAACCCATAAAATGACCCTTTTGACTTTTAACTTTGATTCAATTTATCTCATTTCCTGTGAAAGATATCGAAAAGTGTTCAACTGATAAAATTTTTATCATAAAATCAAAAATATTTTATTGGTTAACATTTTTTCGATATCTTTCGCAGGAAACGAGATACATTGGCTAGAGTGTTTAGGGCAAAAACAATCACCTAAAAAGGAAAAAAAAGAAGGACAGGAAGAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>ATAAGCCCAAATAACCTGATAAACCCATAAAATGACCCTTTTGACTTTTAACTTTGATTCAATTTATCTCATTTCCTGTGAAAGATATCGAAAAGTGTTCAACTGATAAAATTTTTAYCATAAAATCAAAAATATTTTATTGGTTAACATTTTTTCGATATCTTTCGCAGGAAACGAGATACATTGGCTAGAGTGTTTAGGGCAAAAACAATCACCTAAAAAGGAAAAAAAAGAAGGACAGGAAGAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31230</snp_id>
        <super_contig>c005900873.Contig1</super_contig>
        <contig_pos>21184</contig_pos>
        <strand></strand>
        <context>ttggttaaca[T/C]yttttcgata</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAACTGATAAAATTTTTATCATAAAATCAAAAATATTTTATTGGTTAACA</left_flank>
        <right_flank>TTTTTCGATATCTTTCGCAGGAAACGAGATACATTGGCTAGAGTGTTTAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTGCGCATTTTTCTGGAAATATAGATTTTTATAGATGAAAAGAGGGAAAACAAAGAAATGGAGAGGAAGAGGGGACCAATGGTCCGCGGGAGACCATCTATATGCGGTAAGACGAGGTGGTAATAGTAACCGGAAGAAAGAGAAGGTGGGGGAGTGTGTCTAATACGATGGGGTGAATGACAATGAAACACTCCACCCCTCGAGGGGGCGGGGCGAAAGGAAAACGAACACCTGTTGTTCTCTCTGCGTTCCCTGGGGGTGTGTACTATTTCTGCTTTAGTGATAGTCCAGAATTCGGAAACTTGTATTATCACTAACTTTGAAAAATCAAAGCGAAATCTGGCTCTGATAAGCCCAAATAACCTGATAAACCCATAAAATGACCCTTTTGACTTTTAACTTTGATTCAATTTATCTCATTTCCTGTGAAAGATATCGAAAAGTGTTCAACTGATAAAATTTTTATCATAAAATCAAAAATATTTTATTGGTTAACATTTTTTCGATATCTTTCGCAGGAAACGAGATACATTGGCTAGAGTGTTTAGGGCAAAAACAATCACCTAAAAAGGAAAAAAAAGAAGGACAGGAAGAAAAACTGGATTGCACCAGCACAAATGAATTGCTCAACTGGAAAAAAATTGGGACCTGAAAAATCGATGCCTTAAAATTATTCTCCTGTTTAGTACCTTTTATTCGAATATGCACATTTTGAATGGAGGTAAAAAGGGGAACACACAAAAGGAGCTTGTAAACGAAATTAGTATTGCTCTTATTCATGGTCTTGGCATCTAGAATAGTATAAGGGAGAGCTATAGAGCACAGAGATACAAAAATATTTTGAAAAATGGAAAAAATGCAGGTATTAACATAAAAAATACCGTAATACATGTAATAGAAGGACCTGCGACTTTTAACTTTGAGCTCATATATCTCGGTTACTGTAAAATATAAAAAAAATCTGTCAACTGATAAAATATTGTTGATAGTATGATAAA</canonical>
            <polymorphic>GGCTGCGCATTTTTCTGGAAATATAGATTTTTATAGATGAAAAGAGGGAAAACAAAGAAATGGAGAGGAAGAGGGGACCAATGGTCCGCGGGAGACCATCTATATGCGGTAAGACGAGGTGGTAATAGTAACCGGAAGAAAGAGAAGGTGGGGGAGTGTGTCTAATACGATGGGGTGAATGACAATGAAACACTCCACCCCTCGAGGGGGCGGGGCGAAAGGAAAACGAACACCTGTTGTTCTCTCTGCGTTCCCTGGGGGTGTGTACTATTTCTGCTTTAGTGATAGTCCAGAATTCGGAAACTTGTATTATCACTAACTTTGAAAAATCAAAGCGAAATCTGGCTCTGATAAGCCCAAATAACCTGATAAACCCATAAAATGACCCTTTTGACTTTTAACTTTGATTCAATTTATCTCATTTCCTGTGAAAGATATCGAAAAGTGTTCAACTGATAAAATTTTTATCATAAAATCAAAAATATTTTATTGGTTAACAYTTTTTCGATATCTTTCGCAGGAAACGAGATACATTGGCTAGAGTGTTTAGGGCAAAAACAATCACCTAAAAAGGAAAAAAAAGAAGGACAGGAAGAAAAACTGGATTGCACCAGCACAAATGAATTGCTCAACTGGAAAAAAATTGGGACCTGAAAAATCGATGCCTTAAAATTATTCTCCTGTTTAGTACCTTTTATTCGAATATGCACATTTTGAATGGAGGTAAAAAGGGGAACACACAAAAGGAGCTTGTAAACGAAATTAGTATTGCTCTTATTCATGGTCTTGGCATCTAGAATAGTATAAGGGAGAGCTATAGAGCACAGAGATACAAAAATATTTTGAAAAATGGAAAAAATGCAGGTATTAACATAAAAAATACCGTAATACATGTAATAGAAGGACCTGCGACTTTTAACTTTGAGCTCATATATCTCGGTTACTGTAAAATATAAAAAAAATCTGTCAACTGATAAAATATTGTTGATAGTATGATAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAGCCCAAATAACCTGATAAA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTCTTCCTGTCCTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATAAGCCCAAATAACCTGATAAACCCATAAAATGACCCTTTTGACTTTTAACTTTGATTCAATTTATCTCATTTCCTGTGAAAGATATCGAAAAGTGTTCAACTGATAAAATTTTTATCATAAAATCAAAAATATTTTATTGGTTAACATTTTTTCGATATCTTTCGCAGGAAACGAGATACATTGGCTAGAGTGTTTAGGGCAAAAACAATCACCTAAAAAGGAAAAAAAAGAAGGACAGGAAGAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>ATAAGCCCAAATAACCTGATAAACCCATAAAATGACCCTTTTGACTTTTAACTTTGATTCAATTTATCTCATTTCCTGTGAAAGATATCGAAAAGTGTTCAACTGATAAAATTTTTATCATAAAATCAAAAATATTTTATTGGTTAACAYTTTTTCGATATCTTTCGCAGGAAACGAGATACATTGGCTAGAGTGTTTAGGGCAAAAACAATCACCTAAAAAGGAAAAAAAAGAAGGACAGGAAGAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31231</snp_id>
        <super_contig>c005900873.Contig1</super_contig>
        <contig_pos>21185</contig_pos>
        <strand></strand>
        <context>tggttaacay[T/C]ttttcgatat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AACTGATAAAATTTTTATCATAAAATCAAAAATATTTTATTGGTTAACAT</left_flank>
        <right_flank>TTTTCGATATCTTTCGCAGGAAACGAGATACATTGGCTAGAGTGTTTAGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTGCGCATTTTTCTGGAAATATAGATTTTTATAGATGAAAAGAGGGAAAACAAAGAAATGGAGAGGAAGAGGGGACCAATGGTCCGCGGGAGACCATCTATATGCGGTAAGACGAGGTGGTAATAGTAACCGGAAGAAAGAGAAGGTGGGGGAGTGTGTCTAATACGATGGGGTGAATGACAATGAAACACTCCACCCCTCGAGGGGGCGGGGCGAAAGGAAAACGAACACCTGTTGTTCTCTCTGCGTTCCCTGGGGGTGTGTACTATTTCTGCTTTAGTGATAGTCCAGAATTCGGAAACTTGTATTATCACTAACTTTGAAAAATCAAAGCGAAATCTGGCTCTGATAAGCCCAAATAACCTGATAAACCCATAAAATGACCCTTTTGACTTTTAACTTTGATTCAATTTATCTCATTTCCTGTGAAAGATATCGAAAAGTGTTCAACTGATAAAATTTTTATCATAAAATCAAAAATATTTTATTGGTTAACATTTTTTCGATATCTTTCGCAGGAAACGAGATACATTGGCTAGAGTGTTTAGGGCAAAAACAATCACCTAAAAAGGAAAAAAAAGAAGGACAGGAAGAAAAACTGGATTGCACCAGCACAAATGAATTGCTCAACTGGAAAAAAATTGGGACCTGAAAAATCGATGCCTTAAAATTATTCTCCTGTTTAGTACCTTTTATTCGAATATGCACATTTTGAATGGAGGTAAAAAGGGGAACACACAAAAGGAGCTTGTAAACGAAATTAGTATTGCTCTTATTCATGGTCTTGGCATCTAGAATAGTATAAGGGAGAGCTATAGAGCACAGAGATACAAAAATATTTTGAAAAATGGAAAAAATGCAGGTATTAACATAAAAAATACCGTAATACATGTAATAGAAGGACCTGCGACTTTTAACTTTGAGCTCATATATCTCGGTTACTGTAAAATATAAAAAAAATCTGTCAACTGATAAAATATTGTTGATAGTATGATAAAC</canonical>
            <polymorphic>GCTGCGCATTTTTCTGGAAATATAGATTTTTATAGATGAAAAGAGGGAAAACAAAGAAATGGAGAGGAAGAGGGGACCAATGGTCCGCGGGAGACCATCTATATGCGGTAAGACGAGGTGGTAATAGTAACCGGAAGAAAGAGAAGGTGGGGGAGTGTGTCTAATACGATGGGGTGAATGACAATGAAACACTCCACCCCTCGAGGGGGCGGGGCGAAAGGAAAACGAACACCTGTTGTTCTCTCTGCGTTCCCTGGGGGTGTGTACTATTTCTGCTTTAGTGATAGTCCAGAATTCGGAAACTTGTATTATCACTAACTTTGAAAAATCAAAGCGAAATCTGGCTCTGATAAGCCCAAATAACCTGATAAACCCATAAAATGACCCTTTTGACTTTTAACTTTGATTCAATTTATCTCATTTCCTGTGAAAGATATCGAAAAGTGTTCAACTGATAAAATTTTTATCATAAAATCAAAAATATTTTATTGGTTAACATYTTTTCGATATCTTTCGCAGGAAACGAGATACATTGGCTAGAGTGTTTAGGGCAAAAACAATCACCTAAAAAGGAAAAAAAAGAAGGACAGGAAGAAAAACTGGATTGCACCAGCACAAATGAATTGCTCAACTGGAAAAAAATTGGGACCTGAAAAATCGATGCCTTAAAATTATTCTCCTGTTTAGTACCTTTTATTCGAATATGCACATTTTGAATGGAGGTAAAAAGGGGAACACACAAAAGGAGCTTGTAAACGAAATTAGTATTGCTCTTATTCATGGTCTTGGCATCTAGAATAGTATAAGGGAGAGCTATAGAGCACAGAGATACAAAAATATTTTGAAAAATGGAAAAAATGCAGGTATTAACATAAAAAATACCGTAATACATGTAATAGAAGGACCTGCGACTTTTAACTTTGAGCTCATATATCTCGGTTACTGTAAAATATAAAAAAAATCTGTCAACTGATAAAATATTGTTGATAGTATGATAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAGCCCAAATAACCTGATAAA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTCTTCCTGTCCTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATAAGCCCAAATAACCTGATAAACCCATAAAATGACCCTTTTGACTTTTAACTTTGATTCAATTTATCTCATTTCCTGTGAAAGATATCGAAAAGTGTTCAACTGATAAAATTTTTATCATAAAATCAAAAATATTTTATTGGTTAACATTTTTTCGATATCTTTCGCAGGAAACGAGATACATTGGCTAGAGTGTTTAGGGCAAAAACAATCACCTAAAAAGGAAAAAAAAGAAGGACAGGAAGAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>ATAAGCCCAAATAACCTGATAAACCCATAAAATGACCCTTTTGACTTTTAACTTTGATTCAATTTATCTCATTTCCTGTGAAAGATATCGAAAAGTGTTCAACTGATAAAATTTTTATCATAAAATCAAAAATATTTTATTGGTTAACATYTTTTCGATATCTTTCGCAGGAAACGAGATACATTGGCTAGAGTGTTTAGGGCAAAAACAATCACCTAAAAAGGAAAAAAAAGAAGGACAGGAAGAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31232</snp_id>
        <super_contig>c005900873.Contig1</super_contig>
        <contig_pos>23441</contig_pos>
        <strand></strand>
        <context>ggaaaaacag[A/C]aaaacatttc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGGTCCCAACGGTATGACAATGGTCCCAACCAGGCTTACTGGAAAAACAG</left_flank>
        <right_flank>AAAACATTTCAGCGACAAAGTTGAGAATTTTGCTGATAATTGAAAATTGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCACAGGGAGTACTGTAGGCATTATACTTTAGAAGATGCCGAGTCTTACGTAATGTAGAGTTGGAAATTTTTCAAATAGACCTACCTAGATAAATTACGGTCCGGCGCATAGCTCGGTTCAAACTTAATATATCTGGTCGAAATGAAGAATATAATCTAGAATCTGCCGAGGTTTACTTTTCAAAAAATTCCGGGTAGCTCCAGTAGGGCTGCTTTGCTGTCCCATTCGGTTTTCGAACGTAGTTAAGTTAGGTACCATTTTGTAGATCTCCTCAAGTTCTACAATTTGCTTTTTGACAGCTCGGTTGACAAGTATGACTTATAAAACACTTTTGGCTCTTTTCGGGAAGAACGGTCCCAAAATGGGACCACCGGTCCCATCATTGGACCGCCGGTCTCAAGAAGTTCGACAACGGTCCCATTATTCCAACCCCAACTTTACGAGAACGGTCCCAACGGTATGACAATGGTCCCAACCAGGCTTACTGGAAAAACAGAAAAACATTTCAGCGACAAAGTTGAGAATTTTGCTGATAATTGAAAATTGCAGTACTTTTTGAAAAATTGCAGTACTTTTTTTACAAGATATTACTCAGAGTGTTTTTTCTGAAATTATAGGCCTAGGCTGAAACGCCTAATTCACATTATTGTCAGAAAAAGTTGTTTTAGCCTAAGCCTACAATACAAAACCAAAAAACTGAGAATTCTGACTGAATTCCAGATTTTTCGTTTTTCAAAGTACTGCAGTGTTCAATTATCAGCAAAATTCTCAATTTTGCAGCTAAAATGTTTCTCTCAGTTTTCATGGTAAGCCTGGTTGGGACCGTTGTCATACCGTTGGGACCGTTCTCGTAAAGTAGGGACCGTTGTCAAAAATTTGGGACTGTTATCGGACCAATGGGACCATTGTCGAAGTTCGTTGAGACCGACGGTCCAATGATGGGACCGGCGGTCCTGCTTTGGGACCGCCCTTCCCGGAAAGAGCAACACTTTTCAAC</canonical>
            <polymorphic>TTTCACAGGGAGTACTGTAGGCATTATACTTTAGAAGATGCCGAGTCTTACGTAATGTAGAGTTGGAAATTTTTCAAATAGACCTACCTAGATAAATTACGGTCCGGCGCATAGCTCGGTTCAAACTTAATATATCTGGTCGAAATGAAGAATATAATCTAGAATCTGCCGAGGTTTACTTTTCAAAAAATTCCGGGTAGCTCCAGTAGGGCTGCTTTGCTGTCCCATTCGGTTTTCGAACGTAGTTAAGTTAGGTACCATTTTGTAGATCTCCTCAAGTTCTACAATTTGCTTTTTGACAGCTCGGTTGACAAGTATGACTTATAAAACACTTTTGGCTCTTTTCGGGAAGAACGGTCCCAAAATGGGACCACCGGTCCCATCATTGGACCGCCGGTCTCAAGAAGTTCGACAACGGTCCCATTATTCCAACCCCAACTTTACGAGAACGGTCCCAACGGTATGACAATGGTCCCAACCAGGCTTACTGGAAAAACAGMAAAACATTTCAGCGACAAAGTTGAGAATTTTGCTGATAATTGAAAATTGCAGTACTTTTTGAAAAATTGCAGTACTTTTTTTACAAGATATTACTCAGAGTGTTTTTTCTGAAATTATAGGCCTAGGCTGAAACGCCTAATTCACATTATTGTCAGAAAAAGTTGTTTTAGCCTAAGCCTACAATACAAAACCAAAAAACTGAGAATTCTGACTGAATTCCAGATTTTTCGTTTTTCAAAGTACTGCAGTGTTCAATTATCAGCAAAATTCTCAATTTTGCAGCTAAAATGTTTCTCTCAGTTTTCATGGTAAGCCTGGTTGGGACCGTTGTCATACCGTTGGGACCGTTCTCGTAAAGTAGGGACCGTTGTCAAAAATTTGGGACTGTTATCGGACCAATGGGACCATTGTCGAAGTTCGTTGAGACCGACGGTCCAATGATGGGACCGGCGGTCCTGCTTTGGGACCGCCCTTCCCGGAAAGAGCAACACTTTTCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCGGTTGACAAGTATGAC</pcr_primer_p1>
		<pcr_primer_p2>CGGAAACTTAGTTGAAAAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>709</pcr_amplicon_size>
		<canonical_amplicon>GCTCGGTTGACAAGTATGACTTATAAAACACTTTTGGCTCTTTTCGGGAAGAACGGTCCCAAAATGGGACCACCGGTCCCATCATTGGACCGCCGGTCTCAAGAAGTTCGACAACGGTCCCATTATTCCAACCCCAACTTTACGAGAACGGTCCCAACGGTATGACAATGGTCCCAACCAGGCTTACTGGAAAAACAGAAAAACATTTCAGCGACAAAGT</canonical_amplicon>
		<polymorphic_amplicon>GCTCGGTTGACAAGTATGACTTATAAAACACTTTTGGCTCTTTTCGGGAAGAACGGTCCCAAAATGGGACCACCGGTCCCATCATTGGACCGCCGGTCTCAAGAAGTTCGACAACGGTCCCATTATTCCAACCCCAACTTTACGAGAACGGTCCCAACGGTATGACAATGGTCCCAACCAGGCTTACTGGAAAAACAGMAAAACATTTCAGCGACAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31233</snp_id>
        <super_contig>c005900873.Contig1</super_contig>
        <contig_pos>23471</contig_pos>
        <strand></strand>
        <context>gttgagaatt[T/G]tgctgataat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CAGGCTTACTGGAAAAACAGAAAAACATTTCAGCGACAAAGTTGAGAATT</left_flank>
        <right_flank>TGCTGATAATTGAAAATTGCAGTACTTTTTGAAAAATTGCAGTACTTTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAGAAGATGCCGAGTCTTACGTAATGTAGAGTTGGAAATTTTTCAAATAGACCTACCTAGATAAATTACGGTCCGGCGCATAGCTCGGTTCAAACTTAATATATCTGGTCGAAATGAAGAATATAATCTAGAATCTGCCGAGGTTTACTTTTCAAAAAATTCCGGGTAGCTCCAGTAGGGCTGCTTTGCTGTCCCATTCGGTTTTCGAACGTAGTTAAGTTAGGTACCATTTTGTAGATCTCCTCAAGTTCTACAATTTGCTTTTTGACAGCTCGGTTGACAAGTATGACTTATAAAACACTTTTGGCTCTTTTCGGGAAGAACGGTCCCAAAATGGGACCACCGGTCCCATCATTGGACCGCCGGTCTCAAGAAGTTCGACAACGGTCCCATTATTCCAACCCCAACTTTACGAGAACGGTCCCAACGGTATGACAATGGTCCCAACCAGGCTTACTGGAAAAACAGAAAAACATTTCAGCGACAAAGTTGAGAATTTTGCTGATAATTGAAAATTGCAGTACTTTTTGAAAAATTGCAGTACTTTTTTTACAAGATATTACTCAGAGTGTTTTTTCTGAAATTATAGGCCTAGGCTGAAACGCCTAATTCACATTATTGTCAGAAAAAGTTGTTTTAGCCTAAGCCTACAATACAAAACCAAAAAACTGAGAATTCTGACTGAATTCCAGATTTTTCGTTTTTCAAAGTACTGCAGTGTTCAATTATCAGCAAAATTCTCAATTTTGCAGCTAAAATGTTTCTCTCAGTTTTCATGGTAAGCCTGGTTGGGACCGTTGTCATACCGTTGGGACCGTTCTCGTAAAGTAGGGACCGTTGTCAAAAATTTGGGACTGTTATCGGACCAATGGGACCATTGTCGAAGTTCGTTGAGACCGACGGTCCAATGATGGGACCGGCGGTCCTGCTTTGGGACCGCCCTTCCCGGAAAGAGCAACACTTTTCAACTAAGTTTCCGATATCATTGTTTCCTAGTAT</canonical>
            <polymorphic>TTAGAAGATGCCGAGTCTTACGTAATGTAGAGTTGGAAATTTTTCAAATAGACCTACCTAGATAAATTACGGTCCGGCGCATAGCTCGGTTCAAACTTAATATATCTGGTCGAAATGAAGAATATAATCTAGAATCTGCCGAGGTTTACTTTTCAAAAAATTCCGGGTAGCTCCAGTAGGGCTGCTTTGCTGTCCCATTCGGTTTTCGAACGTAGTTAAGTTAGGTACCATTTTGTAGATCTCCTCAAGTTCTACAATTTGCTTTTTGACAGCTCGGTTGACAAGTATGACTTATAAAACACTTTTGGCTCTTTTCGGGAAGAACGGTCCCAAAATGGGACCACCGGTCCCATCATTGGACCGCCGGTCTCAAGAAGTTCGACAACGGTCCCATTATTCCAACCCCAACTTTACGAGAACGGTCCCAACGGTATGACAATGGTCCCAACCAGGCTTACTGGAAAAACAGAAAAACATTTCAGCGACAAAGTTGAGAATTKTGCTGATAATTGAAAATTGCAGTACTTTTTGAAAAATTGCAGTACTTTTTTTACAAGATATTACTCAGAGTGTTTTTTCTGAAATTATAGGCCTAGGCTGAAACGCCTAATTCACATTATTGTCAGAAAAAGTTGTTTTAGCCTAAGCCTACAATACAAAACCAAAAAACTGAGAATTCTGACTGAATTCCAGATTTTTCGTTTTTCAAAGTACTGCAGTGTTCAATTATCAGCAAAATTCTCAATTTTGCAGCTAAAATGTTTCTCTCAGTTTTCATGGTAAGCCTGGTTGGGACCGTTGTCATACCGTTGGGACCGTTCTCGTAAAGTAGGGACCGTTGTCAAAAATTTGGGACTGTTATCGGACCAATGGGACCATTGTCGAAGTTCGTTGAGACCGACGGTCCAATGATGGGACCGGCGGTCCTGCTTTGGGACCGCCCTTCCCGGAAAGAGCAACACTTTTCAACTAAGTTTCCGATATCATTGTTTCCTAGTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>337 179 154 121 110 51 37 11</canonical_bands>
                <polymorphic_bands>516 154 121 110 51 37 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTCGGTTGACAAGTATGAC</pcr_primer_p1>
		<pcr_primer_p2>CGGAAACTTAGTTGAAAAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>709</pcr_amplicon_size>
		<canonical_amplicon>GCTCGGTTGACAAGTATGACTTATAAAACACTTTTGGCTCTTTTCGGGAAGAACGGTCCCAAAATGGGACCACCGGTCCCATCATTGGACCGCCGGTCTCAAGAAGTTCGACAACGGTCCCATTATTCCAACCCCAACTTTACGAGAACGGTCCCAACGGTATGACAATGGTCCCAACCAGGCTTACTGGAAAAACAGAAAAACATTTCAGCGACAAAGTTGAGAATTTTGCTGATAATTGAAAATTGCAGTACTTTTTGAAAAATTGCAGTACTTTTTTTACAAGATATTACTCAGAGTGTTTTTTCTGAAATTATAGGCCTAGGCTGAAACGCCTAATTCACATTATTGTCAGAAAAAGTTGTTTTAGCCTAAGCCTACAATACAAAACCAAAAAACTGAGAATTCTGACTGAATTCCAGATTTTTCGTTTTTCAAAGTACTGCAGTGTTCAATTATCAGCAAAATTCTCAATTTTGCAGCTAAAATGTTTCTCTCAGTTTTCATGGTAAGCCTGGTTGGGACCGTTGTCATACCGTTGGGACCGTTCTCGTAAAGTAGGGACCGTTGTCAAAAATTTGGGACTGTTATCGGACCAATGGGACCATTGTCGAAGTTCGTTGAGACCGACGGTCCAATGATGGGACCGGCGGTCCTGCTTTGGGACCGCCCTTCCCGGAAAGAGCAACACTTTTCAACTAAGTTTCCG</canonical_amplicon>
		<polymorphic_amplicon>GCTCGGTTGACAAGTATGACTTATAAAACACTTTTGGCTCTTTTCGGGAAGAACGGTCCCAAAATGGGACCACCGGTCCCATCATTGGACCGCCGGTCTCAAGAAGTTCGACAACGGTCCCATTATTCCAACCCCAACTTTACGAGAACGGTCCCAACGGTATGACAATGGTCCCAACCAGGCTTACTGGAAAAACAGAAAAACATTTCAGCGACAAAGTTGAGAATTKTGCTGATAATTGAAAATTGCAGTACTTTTTGAAAAATTGCAGTACTTTTTTTACAAGATATTACTCAGAGTGTTTTTTCTGAAATTATAGGCCTAGGCTGAAACGCCTAATTCACATTATTGTCAGAAAAAGTTGTTTTAGCCTAAGCCTACAATACAAAACCAAAAAACTGAGAATTCTGACTGAATTCCAGATTTTTCGTTTTTCAAAGTACTGCAGTGTTCAATTATCAGCAAAATTCTCAATTTTGCAGCTAAAATGTTTCTCTCAGTTTTCATGGTAAGCCTGGTTGGGACCGTTGTCATACCGTTGGGACCGTTCTCGTAAAGTAGGGACCGTTGTCAAAAATTTGGGACTGTTATCGGACCAATGGGACCATTGTCGAAGTTCGTTGAGACCGACGGTCCAATGATGGGACCGGCGGTCCTGCTTTGGGACCGCCCTTCCCGGAAAGAGCAACACTTTTCAACTAAGTTTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31234</snp_id>
        <super_contig>c005900873.Contig1</super_contig>
        <contig_pos>23563</contig_pos>
        <strand></strand>
        <context>aaattatagg[C/A]ctaggctgaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GTACTTTTTTTACAAGATATTACTCAGAGTGTTTTTTCTGAAATTATAGG</left_flank>
        <right_flank>CTAGGCTGAAACGCCTAATTCACATTATTGTCAGAAAAAGTTGTTTTAGC</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTTAATATATCTGGTCGAAATGAAGAATATAATCTAGAATCTGCCGAGGTTTACTTTTCAAAAAATTCCGGGTAGCTCCAGTAGGGCTGCTTTGCTGTCCCATTCGGTTTTCGAACGTAGTTAAGTTAGGTACCATTTTGTAGATCTCCTCAAGTTCTACAATTTGCTTTTTGACAGCTCGGTTGACAAGTATGACTTATAAAACACTTTTGGCTCTTTTCGGGAAGAACGGTCCCAAAATGGGACCACCGGTCCCATCATTGGACCGCCGGTCTCAAGAAGTTCGACAACGGTCCCATTATTCCAACCCCAACTTTACGAGAACGGTCCCAACGGTATGACAATGGTCCCAACCAGGCTTACTGGAAAAACAGAAAAACATTTCAGCGACAAAGTTGAGAATTTTGCTGATAATTGAAAATTGCAGTACTTTTTGAAAAATTGCAGTACTTTTTTTACAAGATATTACTCAGAGTGTTTTTTCTGAAATTATAGGCCTAGGCTGAAACGCCTAATTCACATTATTGTCAGAAAAAGTTGTTTTAGCCTAAGCCTACAATACAAAACCAAAAAACTGAGAATTCTGACTGAATTCCAGATTTTTCGTTTTTCAAAGTACTGCAGTGTTCAATTATCAGCAAAATTCTCAATTTTGCAGCTAAAATGTTTCTCTCAGTTTTCATGGTAAGCCTGGTTGGGACCGTTGTCATACCGTTGGGACCGTTCTCGTAAAGTAGGGACCGTTGTCAAAAATTTGGGACTGTTATCGGACCAATGGGACCATTGTCGAAGTTCGTTGAGACCGACGGTCCAATGATGGGACCGGCGGTCCTGCTTTGGGACCGCCCTTCCCGGAAAGAGCAACACTTTTCAACTAAGTTTCCGATATCATTGTTTCCTAGTATAATAACCAACCGGGACATCTCTCAACTTATTTCATCTCCTAATCCCTCATCGACCCTGCTCTCCTCATCCCCTCTTTTTCTTACTTTCGATA</canonical>
            <polymorphic>AAACTTAATATATCTGGTCGAAATGAAGAATATAATCTAGAATCTGCCGAGGTTTACTTTTCAAAAAATTCCGGGTAGCTCCAGTAGGGCTGCTTTGCTGTCCCATTCGGTTTTCGAACGTAGTTAAGTTAGGTACCATTTTGTAGATCTCCTCAAGTTCTACAATTTGCTTTTTGACAGCTCGGTTGACAAGTATGACTTATAAAACACTTTTGGCTCTTTTCGGGAAGAACGGTCCCAAAATGGGACCACCGGTCCCATCATTGGACCGCCGGTCTCAAGAAGTTCGACAACGGTCCCATTATTCCAACCCCAACTTTACGAGAACGGTCCCAACGGTATGACAATGGTCCCAACCAGGCTTACTGGAAAAACAGAAAAACATTTCAGCGACAAAGTTGAGAATTTTGCTGATAATTGAAAATTGCAGTACTTTTTGAAAAATTGCAGTACTTTTTTTACAAGATATTACTCAGAGTGTTTTTTCTGAAATTATAGGMCTAGGCTGAAACGCCTAATTCACATTATTGTCAGAAAAAGTTGTTTTAGCCTAAGCCTACAATACAAAACCAAAAAACTGAGAATTCTGACTGAATTCCAGATTTTTCGTTTTTCAAAGTACTGCAGTGTTCAATTATCAGCAAAATTCTCAATTTTGCAGCTAAAATGTTTCTCTCAGTTTTCATGGTAAGCCTGGTTGGGACCGTTGTCATACCGTTGGGACCGTTCTCGTAAAGTAGGGACCGTTGTCAAAAATTTGGGACTGTTATCGGACCAATGGGACCATTGTCGAAGTTCGTTGAGACCGACGGTCCAATGATGGGACCGGCGGTCCTGCTTTGGGACCGCCCTTCCCGGAAAGAGCAACACTTTTCAACTAAGTTTCCGATATCATTGTTTCCTAGTATAATAACCAACCGGGACATCTCTCAACTTATTTCATCTCCTAATCCCTCATCGACCCTGCTCTCCTCATCCCCTCTTTTTCTTACTTTCGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGGCCT</site>
                <isoschizomers>
                    <enzyme>AatI</enzyme>
                    <enzyme>Eco147I</enzyme>
                    <enzyme>PceI</enzyme>
                    <enzyme>SseBI</enzyme>
                    <enzyme>StuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCTAGG</site>
                <isoschizomers>
                    <enzyme>AvrII</enzyme>
                    <enzyme>BlnI</enzyme>
                    <enzyme>BspA2I</enzyme>
                    <enzyme>XmaJI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>500 453 47</canonical_bands>
                <polymorphic_bands>953 47</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>308 145 138 106 91 78 44 36 31 11 6 6</canonical_bands>
                <polymorphic_bands>308 145 144 106 91 78 44 36 31 11 6</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTCGGTTGACAAGTATGAC</pcr_primer_p1>
		<pcr_primer_p2>CGGAAACTTAGTTGAAAAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>709</pcr_amplicon_size>
		<canonical_amplicon>GCTCGGTTGACAAGTATGACTTATAAAACACTTTTGGCTCTTTTCGGGAAGAACGGTCCCAAAATGGGACCACCGGTCCCATCATTGGACCGCCGGTCTCAAGAAGTTCGACAACGGTCCCATTATTCCAACCCCAACTTTACGAGAACGGTCCCAACGGTATGACAATGGTCCCAACCAGGCTTACTGGAAAAACAGAAAAACATTTCAGCGACAAAGTTGAGAATTTTGCTGATAATTGAAAATTGCAGTACTTTTTGAAAAATTGCAGTACTTTTTTTACAAGATATTACTCAGAGTGTTTTTTCTGAAATTATAGGCCTAGGCTGAAACGCCTAATTCACATTATTGTCAGAAAAAGTTGTTTTAGCCTAAGCCTACAATACAAAACCAAAAAACTGAGAATTCTGACTGAATTCCAGATTTTTCGTTTTTCAAAGTACTGCAGTGTTCAATTATCAGCAAAATTCTCAATTTTGCAGCTAAAATGTTTCTCTCAGTTTTCATGGTAAGCCTGGTTGGGACCGTTGTCATACCGTTGGGACCGTTCTCGTAAAGTAGGGACCGTTGTCAAAAATTTGGGACTGTTATCGGACCAATGGGACCATTGTCGAAGTTCGTTGAGACCGACGGTCCAATGATGGGACCGGCGGTCCTGCTTTGGGACCGCCCTTCCCGGAAAGAGCAACACTTTTCAACTAAGTTTCCG</canonical_amplicon>
		<polymorphic_amplicon>GCTCGGTTGACAAGTATGACTTATAAAACACTTTTGGCTCTTTTCGGGAAGAACGGTCCCAAAATGGGACCACCGGTCCCATCATTGGACCGCCGGTCTCAAGAAGTTCGACAACGGTCCCATTATTCCAACCCCAACTTTACGAGAACGGTCCCAACGGTATGACAATGGTCCCAACCAGGCTTACTGGAAAAACAGAAAAACATTTCAGCGACAAAGTTGAGAATTTTGCTGATAATTGAAAATTGCAGTACTTTTTGAAAAATTGCAGTACTTTTTTTACAAGATATTACTCAGAGTGTTTTTTCTGAAATTATAGGMCTAGGCTGAAACGCCTAATTCACATTATTGTCAGAAAAAGTTGTTTTAGCCTAAGCCTACAATACAAAACCAAAAAACTGAGAATTCTGACTGAATTCCAGATTTTTCGTTTTTCAAAGTACTGCAGTGTTCAATTATCAGCAAAATTCTCAATTTTGCAGCTAAAATGTTTCTCTCAGTTTTCATGGTAAGCCTGGTTGGGACCGTTGTCATACCGTTGGGACCGTTCTCGTAAAGTAGGGACCGTTGTCAAAAATTTGGGACTGTTATCGGACCAATGGGACCATTGTCGAAGTTCGTTGAGACCGACGGTCCAATGATGGGACCGGCGGTCCTGCTTTGGGACCGCCCTTCCCGGAAAGAGCAACACTTTTCAACTAAGTTTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31235</snp_id>
        <super_contig>c006000771.Contig2</super_contig>
        <contig_pos>14125</contig_pos>
        <strand></strand>
        <context>AAATCTGATT[T/A]TCAGAAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGGATTACGCATCGAGCAGCGAGGACCAATGAAACCTGAAAAATCTGATT</left_flank>
        <right_flank>TCAGAAAATTGAGTAGAAAATTAAATATACCATTTTTACAAGTGCACTTG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAACAAAAACTGTGCTATAGTGAAAAAAAAGTAAAAAAATAGAGAAGATGGGGAGAGGCTGGAATGGATGGGAACAAAAGAAAAAATGACAGCTCCTTCTCCAATTGTGTCTCTTCTTTATAAACAAATAAACGAAGTATAAGCCTTTCTGTGTCGCCTCCTCTAGATGAAAAAAATAAGAGAAAGAATCTATCTATCTGCATGAATCAGAAATGCTTACTCTTTGTGAACAAGTCGGTCCAGTATAGCCTCGGTCACACGCGCACTCGTATTTTGCCACCTCTCGATTCTTGTCAATCTGAAATAATTATTTTTAGAAAATATTTAGGAGAGCACATCATTAAATCCCGGAAAATCCATATTACTTACATGAACCACAGGATTCACACATTTTCCATGCACACATGTGACGCTGGAAATGTTGTTCGATGCAATTAGAGCGGTGCATGGATTACGCATCGAGCAGCGAGGACCAATGAAACCTGAAAAATCTGATTTTCAGAAAATTGAGTAGAAAATTAAATATACCATTTTTACAAGTGCACTTGTAGCCGCCAAGGGTGTTGGAACATTCTCCATTGATGCAATTATTTGGATTTTCGCATTCATTGATGTCAGTGGTGCAGTTTCGTCCTGGAAAATTGAAAATTAGAACATTGATGCTTTGTTCAAAATAATTGTTAAATTTTTGAAAAAATTTGAAAGTTCGTATGGCTATTTGTTCAGGAGTTCAAAGTTGGCTGATTCTCATTGAGCAGGTCAAAATACCGTATTTGCTTTAATCCCATTTAATGCTTTTATCCCACGAAAACAGTCAACTTTGAGCTCAATTATTTTCATTCCGGTGAAAGGTGTCAAAATTTTGCAAACTGATGAATTATTCATCATAATATCGCTAATATTTTATCAGTTGACAAAAATTTGATATATTTTACAGTGAGCAAGATAATTGAGCTAGCAGTTGACGGTTTAGACAAATCGAAAAGATCCGGACTTCT</canonical>
            <polymorphic>TAAAACAAAAACTGTGCTATAGTGAAAAAAAAGTAAAAAAATAGAGAAGATGGGGAGAGGCTGGAATGGATGGGAACAAAAGAAAAAATGACAGCTCCTTCTCCAATTGTGTCTCTTCTTTATAAACAAATAAACGAAGTATAAGCCTTTCTGTGTCGCCTCCTCTAGATGAAAAAAATAAGAGAAAGAATCTATCTATCTGCATGAATCAGAAATGCTTACTCTTTGTGAACAAGTCGGTCCAGTATAGCCTCGGTCACACGCGCACTCGTATTTTGCCACCTCTCGATTCTTGTCAATCTGAAATAATTATTTTTAGAAAATATTTAGGAGAGCACATCATTAAATCCCGGAAAATCCATATTACTTACATGAACCACAGGATTCACACATTTTCCATGCACACATGTGACGCTGGAAATGTTGTTCGATGCAATTAGAGCGGTGCATGGATTACGCATCGAGCAGCGAGGACCAATGAAACCTGAAAAATCTGATTWTCAGAAAATTGAGTAGAAAATTAAATATACCATTTTTACAAGTGCACTTGTAGCCGCCAAGGGTGTTGGAACATTCTCCATTGATGCAATTATTTGGATTTTCGCATTCATTGATGTCAGTGGTGCAGTTTCGTCCTGGAAAATTGAAAATTAGAACATTGATGCTTTGTTCAAAATAATTGTTAAATTTTTGAAAAAATTTGAAAGTTCGTATGGCTATTTGTTCAGGAGTTCAAAGTTGGCTGATTCTCATTGAGCAGGTCAAAATACCGTATTTGCTTTAATCCCATTTAATGCTTTTATCCCACGAAAACAGTCAACTTTGAGCTCAATTATTTTCATTCCGGTGAAAGGTGTCAAAATTTTGCAAACTGATGAATTATTCATCATAATATCGCTAATATTTTATCAGTTGACAAAAATTTGATATATTTTACAGTGAGCAAGATAATTGAGCTAGCAGTTGACGGTTTAGACAAATCGAAAAGATCCGGACTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATATTACTTACATGAACCACAGG</pcr_primer_p1>
		<pcr_primer_p2>GAATGCGAAAATCCAAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATATTACTTACATGAACCACAGGATTCACACATTTTCCATGCACACATGTGACGCTGGAAATGTTGTTCGATGCAATTAGAGCGGTGCATGGATTACGCATCGAGCAGCGAGGACCAATGAAACCTGAAAAATCTGATTTTCAGAAAATTGAGTAGAAAATTAAATATACCATTTTTACAAGTGCACTTGTAGCCGCCAAGGGTGTTGGAACATTCTCCATTGATGCAATTATTTGGATTTTCGCATTC</canonical_amplicon>
		<polymorphic_amplicon>CATATTACTTACATGAACCACAGGATTCACACATTTTCCATGCACACATGTGACGCTGGAAATGTTGTTCGATGCAATTAGAGCGGTGCATGGATTACGCATCGAGCAGCGAGGACCAATGAAACCTGAAAAATCTGATTWTCAGAAAATTGAGTAGAAAATTAAATATACCATTTTTACAAGTGCACTTGTAGCCGCCAAGGGTGTTGGAACATTCTCCATTGATGCAATTATTTGGATTTTCGCATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31236</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>38908</contig_pos>
        <strand>+</strand>
        <context>GAAATTTAAG[A/T]AATTACTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAAAGCAAAGAAAAACAAGCATGAAGAGAACAAAAGATCGAAATTTAAG</left_flank>
        <right_flank>AATTACTTTTCTCGGGAAATGAAGATCAGTGCCATGTCGATGACATAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAACCCTTAAGATGCTCTAATAATTTATTTCCAGAAGAATGAATACGGATAATAAAAGACCAAAGTGATTTTTATACATTTTACTAAACAGGTACATGAAAGTGTTTGGGGTGAGCAATTTATACAATCACGACAATAAAACAAGAGTATTAAATTTTTGGAAAACGGGATTGGACGGGAATTTCAAACTCGCTTCTACATATTAAAATAAAGATCGGATGGTACGGTTGCTTCGGAAAACCACCGGGGGTGGTGGCTCGCTGAAAATTCACAAATTTTATTTTAGAGTTAAAATTATTAGAACTTCCATCACCACATAATAAAAAAAGTATAAACTAAAAATACCAGATAATTCAGTTATTTTGCCTGTGCGAGTAGTCTAATAGTGAGTGGTGGTAGTGGTGACTGCATACGAATCCGACACTTCTCTGAAATGTCTTTATTGTGACAAAAGCAAAGAAAAACAAGCATGAAGAGAACAAAAGATCGAAATTTAAGAAATTACTTTTCTCGGGAAATGAAGATCAGTGCCATGTCGATGACATAGAGCAGAGCACCGAGGAAATAGAAAGCGGCTGCAACTGCCCATCCTTTTACAACAAACTGGATTTGACATCCTGGAATCCCAGCGCATCCGGAGAAGACACCGTTTCCAACAGCCTAAAAATTGTGTCGTTATAGTTTTGTTTTCATAAAATTCAAAATTCCAACCTGAATGAAAAACTCCATGTGGTCATATCCAGTTGCATACCACGTTTCCACTCCTCCACTTACAATGAACGCCACCATCGAAAGTCCGGATATCAGGATTTGCTGGAAAAATGAACTTAAAAAATGTGTAAAACTTTTTTAACTAACCGGATAAGTCAGGATGCTATTTAGAGCAAGTGTTACACAGCTCACTCCAACTGTGATGAGCCCGAAAGCTAATGTGATACAGATAAGAGCCACTTGTCCGTAGACACTGAAAAAATTTTGAGTCTTGGGGAGCTACATGGT</canonical>
            <polymorphic>ATAACCCTTAAGATGCTCTAATAATTTATTTCCAGAAGAATGAATACGGATAATAAAAGACCAAAGTGATTTTTATACATTTTACTAAACAGGTACATGAAAGTGTTTGGGGTGAGCAATTTATACAATCACGACAATAAAACAAGAGTATTAAATTTTTGGAAAACGGGATTGGACGGGAATTTCAAACTCGCTTCTACATATTAAAATAAAGATCGGATGGTACGGTTGCTTCGGAAAACCACCGGGGGTGGTGGCTCGCTGAAAATTCACAAATTTTATTTTAGAGTTAAAATTATTAGAACTTCCATCACCACATAATAAAAAAAGTATAAACTAAAAATACCAGATAATTCAGTTATTTTGCCTGTGCGAGTAGTCTAATAGTGAGTGGTGGTAGTGGTGACTGCATACGAATCCGACACTTCTCTGAAATGTCTTTATTGTGACAAAAGCAAAGAAAAACAAGCATGAAGAGAACAAAAGATCGAAATTTAAGWAATTACTTTTCTCGGGAAATGAAGATCAGTGCCATGTCGATGACATAGAGCAGAGCACCGAGGAAATAGAAAGCGGCTGCAACTGCCCATCCTTTTACAACAAACTGGATTTGACATCCTGGAATCCCAGCGCATCCGGAGAAGACACCGTTTCCAACAGCCTAAAAATTGTGTCGTTATAGTTTTGTTTTCATAAAATTCAAAATTCCAACCTGAATGAAAAACTCCATGTGGTCATATCCAGTTGCATACCACGTTTCCACTCCTCCACTTACAATGAACGCCACCATCGAAAGTCCGGATATCAGGATTTGCTGGAAAAATGAACTTAAAAAATGTGTAAAACTTTTTTAACTAACCGGATAAGTCAGGATGCTATTTAGAGCAAGTGTTACACAGCTCACTCCAACTGTGATGAGCCCGAAAGCTAATGTGATACAGATAAGAGCCACTTGTCCGTAGACACTGAAAAAATTTTGAGTCTTGGGGAGCTACATGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTGTGCGAGTAGTCTAATAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCAAATCCAGTTTGTTGTAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCTGTGCGAGTAGTCTAATAGTGAGTGGTGGTAGTGGTGACTGCATACGAATCCGACACTTCTCTGAAATGTCTTTATTGTGACAAAAGCAAAGAAAAACAAGCATGAAGAGAACAAAAGATCGAAATTTAAGAAATTACTTTTCTCGGGAAATGAAGATCAGTGCCATGTCGATGACATAGAGCAGAGCACCGAGGAAATAGAAAGCGGCTGCAACTGCCCATCCTTTTACAACAAACTGGATTTGA</canonical_amplicon>
		<polymorphic_amplicon>CCTGTGCGAGTAGTCTAATAGTGAGTGGTGGTAGTGGTGACTGCATACGAATCCGACACTTCTCTGAAATGTCTTTATTGTGACAAAAGCAAAGAAAAACAAGCATGAAGAGAACAAAAGATCGAAATTTAAGWAATTACTTTTCTCGGGAAATGAAGATCAGTGCCATGTCGATGACATAGAGCAGAGCACCGAGGAAATAGAAAGCGGCTGCAACTGCCCATCCTTTTACAACAAACTGGATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31237</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>43422</contig_pos>
        <strand>+</strand>
        <context>AAGATTCAAA[A/G]ACCTAATCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTTCTGGGAATGAGTTTATTTTTGAAGTCCTCTAGGATCAAGATTCAAA</left_flank>
        <right_flank>ACCTAATCTTGAAAAATACCCAGTTTTGATTTTCAATTTGTTCAAATGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTTGAAAATTTTGAGCTCTATTAAAGGTTTTATGTAGTAAATCACAACATTACTATTTTATAAAATTTTTAAGCAACTCAACAAACTTGAAACTTTTTTTCATTTAAAACATTTTGGTTGAAATCAAACAATCGAAACCAAAACTGGACAATCTCAATGTTCTGTTCAAAATAAGAGTTAACCTGCAATGATCAAAAGCATTTCAAAACTGGGTTTACACCATGCAACCACAGATTTCGACTGATTTGTGAATCATCATGTCCTGTCCAGTTCGCAAAAAAAGAGGTTCATAAAACAGAAATGACCTGAAAACCAAAAAAAAAAACAGAAAACCAGTTACAGATCAAGAAGTTTATGTATCTTGGGTAACTGAAAGCATTAATAAATACCATGGGAATATCGGAAACATTTTGTGTAGATAAATTTCTTTTTAAGGTCTTTTTGAAGGTTCTGGGAATGAGTTTATTTTTGAAGTCCTCTAGGATCAAGATTCAAAGACCTAATCTTGAAAAATACCCAGTTTTGATTTTCAATTTGTTCAAATGAAGTTCTTGCAGCAACAATTTTATTTACAAAAACGGAATACTAAATCGACATCTACAAAGAATTAAGCAATATCACACTCAGAACATCACACACAAGCTCGTTCCTGATTTATTTTGGACCAGGGTTTAAAAGTTTTCGGGGAGAAGGAATTCATGGAAAATAAAATTTGGATCTAGAAGATAGTGGTCATGTCATACTGTAAGTCGAACCACATTAGAGTGGCACCGTAAAGAGTGAAGAAAAGGAAGAAGGAGAGGAAATAGACAACTGGTGGAAGAGTAGACGTTGTGGAGCAGAAGAGGAGAAGACCAGAGCAGAAAAGTATTGATATGTTGGTGGCAATCACTTTTTGGGTGGCATATCGGAAATACTCGTCCTGAAAACAAATACGTCTGGGGAATTTAGAAGTTACTGGTGTATTAATGCCGAACAGGATACAGATACTAGGCTC</canonical>
            <polymorphic>AAAGTTGAAAATTTTGAGCTCTATTAAAGGTTTTATGTAGTAAATCACAACATTACTATTTTATAAAATTTTTAAGCAACTCAACAAACTTGAAACTTTTTTTCATTTAAAACATTTTGGTTGAAATCAAACAATCGAAACCAAAACTGGACAATCTCAATGTTCTGTTCAAAATAAGAGTTAACCTGCAATGATCAAAAGCATTTCAAAACTGGGTTTACACCATGCAACCACAGATTTCGACTGATTTGTGAATCATCATGTCCTGTCCAGTTCGCAAAAAAAGAGGTTCATAAAACAGAAATGACCTGAAAACCAAAAAAAAAAACAGAAAACCAGTTACAGATCAAGAAGTTTATGTATCTTGGGTAACTGAAAGCATTAATAAATACCATGGGAATATCGGAAACATTTTGTGTAGATAAATTTCTTTTTAAGGTCTTTTTGAAGGTTCTGGGAATGAGTTTATTTTTGAAGTCCTCTAGGATCAAGATTCAAARACCTAATCTTGAAAAATACCCAGTTTTGATTTTCAATTTGTTCAAATGAAGTTCTTGCAGCAACAATTTTATTTACAAAAACGGAATACTAAATCGACATCTACAAAGAATTAAGCAATATCACACTCAGAACATCACACACAAGCTCGTTCCTGATTTATTTTGGACCAGGGTTTAAAAGTTTTCGGGGAGAAGGAATTCATGGAAAATAAAATTTGGATCTAGAAGATAGTGGTCATGTCATACTGTAAGTCGAACCACATTAGAGTGGCACCGTAAAGAGTGAAGAAAAGGAAGAAGGAGAGGAAATAGACAACTGGTGGAAGAGTAGACGTTGTGGAGCAGAAGAGGAGAAGACCAGAGCAGAAAAGTATTGATATGTTGGTGGCAATCACTTTTTGGGTGGCATATCGGAAATACTCGTCCTGAAAACAAATACGTCTGGGGAATTTAGAAGTTACTGGTGTATTAATGCCGAACAGGATACAGATACTAGGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTTAAGGTCTTTTTGAAGGT</pcr_primer_p1>
		<pcr_primer_p2>TTTAAACCCTGGTCCAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTTTAAGGTCTTTTTGAAGGTTCTGGGAATGAGTTTATTTTTGAAGTCCTCTAGGATCAAGATTCAAAGACCTAATCTTGAAAAATACCCAGTTTTGATTTTCAATTTGTTCAAATGAAGTTCTTGCAGCAACAATTTTATTTACAAAAACGGAATACTAAATCGACATCTACAAAGAATTAAGCAATATCACACTCAGAACATCACACACAAGCTCGTTCCTGATTTATTTTGGACCAGGGTTTAAA</canonical_amplicon>
		<polymorphic_amplicon>CTTTTTAAGGTCTTTTTGAAGGTTCTGGGAATGAGTTTATTTTTGAAGTCCTCTAGGATCAAGATTCAAARACCTAATCTTGAAAAATACCCAGTTTTGATTTTCAATTTGTTCAAATGAAGTTCTTGCAGCAACAATTTTATTTACAAAAACGGAATACTAAATCGACATCTACAAAGAATTAAGCAATATCACACTCAGAACATCACACACAAGCTCGTTCCTGATTTATTTTGGACCAGGGTTTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31238</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>43506</contig_pos>
        <strand>+</strand>
        <context>TACAAAAACG[A/G]AATACTAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATTTGTTCAAATGAAGTTCTTGCAGCAACAATTTTATTTACAAAAACG</left_flank>
        <right_flank>AATACTAAATCGACATCTACAAAGAATTAAGCAATATCACACTCAGAACA</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAACTTGAAACTTTTTTTCATTTAAAACATTTTGGTTGAAATCAAACAATCGAAACCAAAACTGGACAATCTCAATGTTCTGTTCAAAATAAGAGTTAACCTGCAATGATCAAAAGCATTTCAAAACTGGGTTTACACCATGCAACCACAGATTTCGACTGATTTGTGAATCATCATGTCCTGTCCAGTTCGCAAAAAAAGAGGTTCATAAAACAGAAATGACCTGAAAACCAAAAAAAAAAACAGAAAACCAGTTACAGATCAAGAAGTTTATGTATCTTGGGTAACTGAAAGCATTAATAAATACCATGGGAATATCGGAAACATTTTGTGTAGATAAATTTCTTTTTAAGGTCTTTTTGAAGGTTCTGGGAATGAGTTTATTTTTGAAGTCCTCTAGGATCAAGATTCAAAGACCTAATCTTGAAAAATACCCAGTTTTGATTTTCAATTTGTTCAAATGAAGTTCTTGCAGCAACAATTTTATTTACAAAAACGGAATACTAAATCGACATCTACAAAGAATTAAGCAATATCACACTCAGAACATCACACACAAGCTCGTTCCTGATTTATTTTGGACCAGGGTTTAAAAGTTTTCGGGGAGAAGGAATTCATGGAAAATAAAATTTGGATCTAGAAGATAGTGGTCATGTCATACTGTAAGTCGAACCACATTAGAGTGGCACCGTAAAGAGTGAAGAAAAGGAAGAAGGAGAGGAAATAGACAACTGGTGGAAGAGTAGACGTTGTGGAGCAGAAGAGGAGAAGACCAGAGCAGAAAAGTATTGATATGTTGGTGGCAATCACTTTTTGGGTGGCATATCGGAAATACTCGTCCTGAAAACAAATACGTCTGGGGAATTTAGAAGTTACTGGTGTATTAATGCCGAACAGGATACAGATACTAGGCTCATACTGATCTATCATTTCTCTTGAACTTATAATCAACTCACTGTGGTCCCTCTTTTCTTATGTTTTCTTGTTCTACACTGTCTA</canonical>
            <polymorphic>CAAACTTGAAACTTTTTTTCATTTAAAACATTTTGGTTGAAATCAAACAATCGAAACCAAAACTGGACAATCTCAATGTTCTGTTCAAAATAAGAGTTAACCTGCAATGATCAAAAGCATTTCAAAACTGGGTTTACACCATGCAACCACAGATTTCGACTGATTTGTGAATCATCATGTCCTGTCCAGTTCGCAAAAAAAGAGGTTCATAAAACAGAAATGACCTGAAAACCAAAAAAAAAAACAGAAAACCAGTTACAGATCAAGAAGTTTATGTATCTTGGGTAACTGAAAGCATTAATAAATACCATGGGAATATCGGAAACATTTTGTGTAGATAAATTTCTTTTTAAGGTCTTTTTGAAGGTTCTGGGAATGAGTTTATTTTTGAAGTCCTCTAGGATCAAGATTCAAAGACCTAATCTTGAAAAATACCCAGTTTTGATTTTCAATTTGTTCAAATGAAGTTCTTGCAGCAACAATTTTATTTACAAAAACGRAATACTAAATCGACATCTACAAAGAATTAAGCAATATCACACTCAGAACATCACACACAAGCTCGTTCCTGATTTATTTTGGACCAGGGTTTAAAAGTTTTCGGGGAGAAGGAATTCATGGAAAATAAAATTTGGATCTAGAAGATAGTGGTCATGTCATACTGTAAGTCGAACCACATTAGAGTGGCACCGTAAAGAGTGAAGAAAAGGAAGAAGGAGAGGAAATAGACAACTGGTGGAAGAGTAGACGTTGTGGAGCAGAAGAGGAGAAGACCAGAGCAGAAAAGTATTGATATGTTGGTGGCAATCACTTTTTGGGTGGCATATCGGAAATACTCGTCCTGAAAACAAATACGTCTGGGGAATTTAGAAGTTACTGGTGTATTAATGCCGAACAGGATACAGATACTAGGCTCATACTGATCTATCATTTCTCTTGAACTTATAATCAACTCACTGTGGTCCCTCTTTTCTTATGTTTTCTTGTTCTACACTGTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTAATCTTGAAAAATACCCAGT</pcr_primer_p1>
		<pcr_primer_p2>CAGTATGACATGACCACTATCTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCTAATCTTGAAAAATACCCAGTTTTGATTTTCAATTTGTTCAAATGAAGTTCTTGCAGCAACAATTTTATTTACAAAAACGGAATACTAAATCGACATCTACAAAGAATTAAGCAATATCACACTCAGAACATCACACACAAGCTCGTTCCTGATTTATTTTGGACCAGGGTTTAAAAGTTTTCGGGGAGAAGGAATTCATGGAAAATAAAATTTGGATCTAGAAGATAGTGGTCATGTCATACTG</canonical_amplicon>
		<polymorphic_amplicon>CCTAATCTTGAAAAATACCCAGTTTTGATTTTCAATTTGTTCAAATGAAGTTCTTGCAGCAACAATTTTATTTACAAAAACGRAATACTAAATCGACATCTACAAAGAATTAAGCAATATCACACTCAGAACATCACACACAAGCTCGTTCCTGATTTATTTTGGACCAGGGTTTAAAAGTTTTCGGGGAGAAGGAATTCATGGAAAATAAAATTTGGATCTAGAAGATAGTGGTCATGTCATACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31239</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>43547</contig_pos>
        <strand>+</strand>
        <context>GCAATATCAC[A/G]CTCAGAACAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAAAAACGGAATACTAAATCGACATCTACAAAGAATTAAGCAATATCAC</left_flank>
        <right_flank>CTCAGAACATCACACACAAGCTCGTTCCTGATTTATTTTGGACCAGGGTT</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAAACAATCGAAACCAAAACTGGACAATCTCAATGTTCTGTTCAAAATAAGAGTTAACCTGCAATGATCAAAAGCATTTCAAAACTGGGTTTACACCATGCAACCACAGATTTCGACTGATTTGTGAATCATCATGTCCTGTCCAGTTCGCAAAAAAAGAGGTTCATAAAACAGAAATGACCTGAAAACCAAAAAAAAAAACAGAAAACCAGTTACAGATCAAGAAGTTTATGTATCTTGGGTAACTGAAAGCATTAATAAATACCATGGGAATATCGGAAACATTTTGTGTAGATAAATTTCTTTTTAAGGTCTTTTTGAAGGTTCTGGGAATGAGTTTATTTTTGAAGTCCTCTAGGATCAAGATTCAAAGACCTAATCTTGAAAAATACCCAGTTTTGATTTTCAATTTGTTCAAATGAAGTTCTTGCAGCAACAATTTTATTTACAAAAACGGAATACTAAATCGACATCTACAAAGAATTAAGCAATATCACACTCAGAACATCACACACAAGCTCGTTCCTGATTTATTTTGGACCAGGGTTTAAAAGTTTTCGGGGAGAAGGAATTCATGGAAAATAAAATTTGGATCTAGAAGATAGTGGTCATGTCATACTGTAAGTCGAACCACATTAGAGTGGCACCGTAAAGAGTGAAGAAAAGGAAGAAGGAGAGGAAATAGACAACTGGTGGAAGAGTAGACGTTGTGGAGCAGAAGAGGAGAAGACCAGAGCAGAAAAGTATTGATATGTTGGTGGCAATCACTTTTTGGGTGGCATATCGGAAATACTCGTCCTGAAAACAAATACGTCTGGGGAATTTAGAAGTTACTGGTGTATTAATGCCGAACAGGATACAGATACTAGGCTCATACTGATCTATCATTTCTCTTGAACTTATAATCAACTCACTGTGGTCCCTCTTTTCTTATGTTTTCTTGTTCTACACTGTCTATTCTTCAACGGCTTTTTCACTCGATCCGGCACTGTCCATAT</canonical>
            <polymorphic>ATCAAACAATCGAAACCAAAACTGGACAATCTCAATGTTCTGTTCAAAATAAGAGTTAACCTGCAATGATCAAAAGCATTTCAAAACTGGGTTTACACCATGCAACCACAGATTTCGACTGATTTGTGAATCATCATGTCCTGTCCAGTTCGCAAAAAAAGAGGTTCATAAAACAGAAATGACCTGAAAACCAAAAAAAAAAACAGAAAACCAGTTACAGATCAAGAAGTTTATGTATCTTGGGTAACTGAAAGCATTAATAAATACCATGGGAATATCGGAAACATTTTGTGTAGATAAATTTCTTTTTAAGGTCTTTTTGAAGGTTCTGGGAATGAGTTTATTTTTGAAGTCCTCTAGGATCAAGATTCAAAGACCTAATCTTGAAAAATACCCAGTTTTGATTTTCAATTTGTTCAAATGAAGTTCTTGCAGCAACAATTTTATTTACAAAAACGGAATACTAAATCGACATCTACAAAGAATTAAGCAATATCACRCTCAGAACATCACACACAAGCTCGTTCCTGATTTATTTTGGACCAGGGTTTAAAAGTTTTCGGGGAGAAGGAATTCATGGAAAATAAAATTTGGATCTAGAAGATAGTGGTCATGTCATACTGTAAGTCGAACCACATTAGAGTGGCACCGTAAAGAGTGAAGAAAAGGAAGAAGGAGAGGAAATAGACAACTGGTGGAAGAGTAGACGTTGTGGAGCAGAAGAGGAGAAGACCAGAGCAGAAAAGTATTGATATGTTGGTGGCAATCACTTTTTGGGTGGCATATCGGAAATACTCGTCCTGAAAACAAATACGTCTGGGGAATTTAGAAGTTACTGGTGTATTAATGCCGAACAGGATACAGATACTAGGCTCATACTGATCTATCATTTCTCTTGAACTTATAATCAACTCACTGTGGTCCCTCTTTTCTTATGTTTTCTTGTTCTACACTGTCTATTCTTCAACGGCTTTTTCACTCGATCCGGCACTGTCCATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>205 165 97 93 74 61 48 37 32 26 26 20 17 12 12 12 11 11 10 10 7 5 3 2 2 2</canonical_bands>
                <polymorphic_bands>205 165 97 93 74 61 48 37 32 26 26 20 17 14 12 12 11 11 10 10 7 5 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTAATCTTGAAAAATACCCAGT</pcr_primer_p1>
		<pcr_primer_p2>CAGTATGACATGACCACTATCTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCTAATCTTGAAAAATACCCAGTTTTGATTTTCAATTTGTTCAAATGAAGTTCTTGCAGCAACAATTTTATTTACAAAAACGGAATACTAAATCGACATCTACAAAGAATTAAGCAATATCACACTCAGAACATCACACACAAGCTCGTTCCTGATTTATTTTGGACCAGGGTTTAAAAGTTTTCGGGGAGAAGGAATTCATGGAAAATAAAATTTGGATCTAGAAGATAGTGGTCATGTCATACTG</canonical_amplicon>
		<polymorphic_amplicon>CCTAATCTTGAAAAATACCCAGTTTTGATTTTCAATTTGTTCAAATGAAGTTCTTGCAGCAACAATTTTATTTACAAAAACGGAATACTAAATCGACATCTACAAAGAATTAAGCAATATCACRCTCAGAACATCACACACAAGCTCGTTCCTGATTTATTTTGGACCAGGGTTTAAAAGTTTTCGGGGAGAAGGAATTCATGGAAAATAAAATTTGGATCTAGAAGATAGTGGTCATGTCATACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31240</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>43577</contig_pos>
        <strand>+</strand>
        <context>GCTCGTTCCT[C/T]ATTTATTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGAATTAAGCAATATCACACTCAGAACATCACACACAAGCTCGTTCCT</left_flank>
        <right_flank>ATTTATTTTGGACCAGGGTTTAAAAGTTTTCGGGGAGAAGGAATTCATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCAATGTTCTGTTCAAAATAAGAGTTAACCTGCAATGATCAAAAGCATTTCAAAACTGGGTTTACACCATGCAACCACAGATTTCGACTGATTTGTGAATCATCATGTCCTGTCCAGTTCGCAAAAAAAGAGGTTCATAAAACAGAAATGACCTGAAAACCAAAAAAAAAAACAGAAAACCAGTTACAGATCAAGAAGTTTATGTATCTTGGGTAACTGAAAGCATTAATAAATACCATGGGAATATCGGAAACATTTTGTGTAGATAAATTTCTTTTTAAGGTCTTTTTGAAGGTTCTGGGAATGAGTTTATTTTTGAAGTCCTCTAGGATCAAGATTCAAAGACCTAATCTTGAAAAATACCCAGTTTTGATTTTCAATTTGTTCAAATGAAGTTCTTGCAGCAACAATTTTATTTACAAAAACGGAATACTAAATCGACATCTACAAAGAATTAAGCAATATCACACTCAGAACATCACACACAAGCTCGTTCCTGATTTATTTTGGACCAGGGTTTAAAAGTTTTCGGGGAGAAGGAATTCATGGAAAATAAAATTTGGATCTAGAAGATAGTGGTCATGTCATACTGTAAGTCGAACCACATTAGAGTGGCACCGTAAAGAGTGAAGAAAAGGAAGAAGGAGAGGAAATAGACAACTGGTGGAAGAGTAGACGTTGTGGAGCAGAAGAGGAGAAGACCAGAGCAGAAAAGTATTGATATGTTGGTGGCAATCACTTTTTGGGTGGCATATCGGAAATACTCGTCCTGAAAACAAATACGTCTGGGGAATTTAGAAGTTACTGGTGTATTAATGCCGAACAGGATACAGATACTAGGCTCATACTGATCTATCATTTCTCTTGAACTTATAATCAACTCACTGTGGTCCCTCTTTTCTTATGTTTTCTTGTTCTACACTGTCTATTCTTCAACGGCTTTTTCACTCGATCCGGCACTGTCCATATTGCTTGCTCCGCCCCATCCCATGAATTTGG</canonical>
            <polymorphic>CTCAATGTTCTGTTCAAAATAAGAGTTAACCTGCAATGATCAAAAGCATTTCAAAACTGGGTTTACACCATGCAACCACAGATTTCGACTGATTTGTGAATCATCATGTCCTGTCCAGTTCGCAAAAAAAGAGGTTCATAAAACAGAAATGACCTGAAAACCAAAAAAAAAAACAGAAAACCAGTTACAGATCAAGAAGTTTATGTATCTTGGGTAACTGAAAGCATTAATAAATACCATGGGAATATCGGAAACATTTTGTGTAGATAAATTTCTTTTTAAGGTCTTTTTGAAGGTTCTGGGAATGAGTTTATTTTTGAAGTCCTCTAGGATCAAGATTCAAAGACCTAATCTTGAAAAATACCCAGTTTTGATTTTCAATTTGTTCAAATGAAGTTCTTGCAGCAACAATTTTATTTACAAAAACGGAATACTAAATCGACATCTACAAAGAATTAAGCAATATCACACTCAGAACATCACACACAAGCTCGTTCCTYATTTATTTTGGACCAGGGTTTAAAAGTTTTCGGGGAGAAGGAATTCATGGAAAATAAAATTTGGATCTAGAAGATAGTGGTCATGTCATACTGTAAGTCGAACCACATTAGAGTGGCACCGTAAAGAGTGAAGAAAAGGAAGAAGGAGAGGAAATAGACAACTGGTGGAAGAGTAGACGTTGTGGAGCAGAAGAGGAGAAGACCAGAGCAGAAAAGTATTGATATGTTGGTGGCAATCACTTTTTGGGTGGCATATCGGAAATACTCGTCCTGAAAACAAATACGTCTGGGGAATTTAGAAGTTACTGGTGTATTAATGCCGAACAGGATACAGATACTAGGCTCATACTGATCTATCATTTCTCTTGAACTTATAATCAACTCACTGTGGTCCCTCTTTTCTTATGTTTTCTTGTTCTACACTGTCTATTCTTCAACGGCTTTTTCACTCGATCCGGCACTGTCCATATTGCTTGCTCCGCCCCATCCCATGAATTTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>203 193 144 141 135 95 70 19</canonical_bands>
                <polymorphic_bands>214 203 193 141 135 95 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTAATCTTGAAAAATACCCAGT</pcr_primer_p1>
		<pcr_primer_p2>CAGTATGACATGACCACTATCTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCTAATCTTGAAAAATACCCAGTTTTGATTTTCAATTTGTTCAAATGAAGTTCTTGCAGCAACAATTTTATTTACAAAAACGGAATACTAAATCGACATCTACAAAGAATTAAGCAATATCACACTCAGAACATCACACACAAGCTCGTTCCTGATTTATTTTGGACCAGGGTTTAAAAGTTTTCGGGGAGAAGGAATTCATGGAAAATAAAATTTGGATCTAGAAGATAGTGGTCATGTCATACTG</canonical_amplicon>
		<polymorphic_amplicon>CCTAATCTTGAAAAATACCCAGTTTTGATTTTCAATTTGTTCAAATGAAGTTCTTGCAGCAACAATTTTATTTACAAAAACGGAATACTAAATCGACATCTACAAAGAATTAAGCAATATCACACTCAGAACATCACACACAAGCTCGTTCCTYATTTATTTTGGACCAGGGTTTAAAAGTTTTCGGGGAGAAGGAATTCATGGAAAATAAAATTTGGATCTAGAAGATAGTGGTCATGTCATACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31241</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>43676</contig_pos>
        <strand>+</strand>
        <context>TACTGTAAGT[C/G]GAACCACATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGAAAATAAAATTTGGATCTAGAAGATAGTGGTCATGTCATACTGTAAGT</left_flank>
        <right_flank>GAACCACATTAGAGTGGCACCGTAAAGAGTGAAGAAAAGGAAGAAGGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCATCATGTCCTGTCCAGTTCGCAAAAAAAGAGGTTCATAAAACAGAAATGACCTGAAAACCAAAAAAAAAAACAGAAAACCAGTTACAGATCAAGAAGTTTATGTATCTTGGGTAACTGAAAGCATTAATAAATACCATGGGAATATCGGAAACATTTTGTGTAGATAAATTTCTTTTTAAGGTCTTTTTGAAGGTTCTGGGAATGAGTTTATTTTTGAAGTCCTCTAGGATCAAGATTCAAAGACCTAATCTTGAAAAATACCCAGTTTTGATTTTCAATTTGTTCAAATGAAGTTCTTGCAGCAACAATTTTATTTACAAAAACGGAATACTAAATCGACATCTACAAAGAATTAAGCAATATCACACTCAGAACATCACACACAAGCTCGTTCCTGATTTATTTTGGACCAGGGTTTAAAAGTTTTCGGGGAGAAGGAATTCATGGAAAATAAAATTTGGATCTAGAAGATAGTGGTCATGTCATACTGTAAGTCGAACCACATTAGAGTGGCACCGTAAAGAGTGAAGAAAAGGAAGAAGGAGAGGAAATAGACAACTGGTGGAAGAGTAGACGTTGTGGAGCAGAAGAGGAGAAGACCAGAGCAGAAAAGTATTGATATGTTGGTGGCAATCACTTTTTGGGTGGCATATCGGAAATACTCGTCCTGAAAACAAATACGTCTGGGGAATTTAGAAGTTACTGGTGTATTAATGCCGAACAGGATACAGATACTAGGCTCATACTGATCTATCATTTCTCTTGAACTTATAATCAACTCACTGTGGTCCCTCTTTTCTTATGTTTTCTTGTTCTACACTGTCTATTCTTCAACGGCTTTTTCACTCGATCCGGCACTGTCCATATTGCTTGCTCCGCCCCATCCCATGAATTTGGACCGACCAATCTATACACATATGGAACATTGGCACCCATAAACAACTTCATCCAGAATCTGGGATACTGGAACAAGTACTGGTTCATCGGTGGAAGACA</canonical>
            <polymorphic>ATCATCATGTCCTGTCCAGTTCGCAAAAAAAGAGGTTCATAAAACAGAAATGACCTGAAAACCAAAAAAAAAAACAGAAAACCAGTTACAGATCAAGAAGTTTATGTATCTTGGGTAACTGAAAGCATTAATAAATACCATGGGAATATCGGAAACATTTTGTGTAGATAAATTTCTTTTTAAGGTCTTTTTGAAGGTTCTGGGAATGAGTTTATTTTTGAAGTCCTCTAGGATCAAGATTCAAAGACCTAATCTTGAAAAATACCCAGTTTTGATTTTCAATTTGTTCAAATGAAGTTCTTGCAGCAACAATTTTATTTACAAAAACGGAATACTAAATCGACATCTACAAAGAATTAAGCAATATCACACTCAGAACATCACACACAAGCTCGTTCCTGATTTATTTTGGACCAGGGTTTAAAAGTTTTCGGGGAGAAGGAATTCATGGAAAATAAAATTTGGATCTAGAAGATAGTGGTCATGTCATACTGTAAGTSGAACCACATTAGAGTGGCACCGTAAAGAGTGAAGAAAAGGAAGAAGGAGAGGAAATAGACAACTGGTGGAAGAGTAGACGTTGTGGAGCAGAAGAGGAGAAGACCAGAGCAGAAAAGTATTGATATGTTGGTGGCAATCACTTTTTGGGTGGCATATCGGAAATACTCGTCCTGAAAACAAATACGTCTGGGGAATTTAGAAGTTACTGGTGTATTAATGCCGAACAGGATACAGATACTAGGCTCATACTGATCTATCATTTCTCTTGAACTTATAATCAACTCACTGTGGTCCCTCTTTTCTTATGTTTTCTTGTTCTACACTGTCTATTCTTCAACGGCTTTTTCACTCGATCCGGCACTGTCCATATTGCTTGCTCCGCCCCATCCCATGAATTTGGACCGACCAATCTATACACATATGGAACATTGGCACCCATAAACAACTTCATCCAGAATCTGGGATACTGGAACAAGTACTGGTTCATCGGTGGAAGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>352 341 159 148</canonical_bands>
                <polymorphic_bands>511 341 148</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGAATTCATGGAAAATAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TATTTGTTTTCAGGACGAGTATT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAGGAATTCATGGAAAATAAAATTTGGATCTAGAAGATAGTGGTCATGTCATACTGTAAGTCGAACCACATTAGAGTGGCACCGTAAAGAGTGAAGAAAAGGAAGAAGGAGAGGAAATAGACAACTGGTGGAAGAGTAGACGTTGTGGAGCAGAAGAGGAGAAGACCAGAGCAGAAAAGTATTGATATGTTGGTGGCAATCACTTTTTGGGTGGCATATCGGAAATACTCGTCCTGAAAACAAATA</canonical_amplicon>
		<polymorphic_amplicon>AAGGAATTCATGGAAAATAAAATTTGGATCTAGAAGATAGTGGTCATGTCATACTGTAAGTSGAACCACATTAGAGTGGCACCGTAAAGAGTGAAGAAAAGGAAGAAGGAGAGGAAATAGACAACTGGTGGAAGAGTAGACGTTGTGGAGCAGAAGAGGAGAAGACCAGAGCAGAAAAGTATTGATATGTTGGTGGCAATCACTTTTTGGGTGGCATATCGGAAATACTCGTCCTGAAAACAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31242</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>74173</contig_pos>
        <strand>+</strand>
        <context>ACATTTTGTA[A/G]TTTCCATCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCCCGGTTGGATGTTTTTTTTGGGAATACCGAATCGGACATTTTGTA</left_flank>
        <right_flank>TTTCCATCTTCAAGATTTAATAATAGCAGGTTTTCAAGAAAATTCATTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTATACTGAAAAGTTTCGTTAATATGATGAATATTAAAATCTGAAATTCTCTATTTAAGACGGGAGGTAGTGACTTGGAATTTCTAATAGCTTTTCATCTTGATCTGGAATTATTTTTCGTAGTATTGAAACATCACTTGGCCCAATTCTAGTTTATTTTCAACATACTCAAAAGTTCAAGTCACAATATTCAAATCTTTTGATTTTCTGACTTCTGCATAAATCATGAGTACTCGTTTTCCCACGGCTGTTTATCGAAGAACTAGACGGGTGCACCTGTTTTTTTTCGATTCTGAACTTTTGAACAAAGTTGAACGAAAATCTCCCAACAGAAAATTCAGGAAGTTCGATGAATTATGAAACATGAAATTGGAGTTTCAAAAGGCAATTTTTTGTGATCTAGGTCAGAAAAAAGAGAATTCAAACAGAATTAATATTGAAATTTTATTTTCCCGGTTGGATGTTTTTTTTGGGAATACCGAATCGGACATTTTGTAATTTCCATCTTCAAGATTTAATAATAGCAGGTTTTCAAGAAAATTCATTCCATTTCTTCTTTCCTCTTCATTCAAAAATGGTCAAGATCTTAACGGAGGGGGGAACAGGAGATCTTTCCGAATTTTTTTGGAGTTACGATATGCATTCTGACGTAATGGTGTATAGTTTTTAGTGTTGGGGGTTCGGCCGCCTTATTGTTAGCATGTTCCACCGTAGATCAACTTGTAGCGGCGCGGTCGGCCCCTCCGACAGTTTGACTAAAAGTTTAACTCCTCGAGGGTCGTATATCAACAGAATTTCGAGAAAATTACTTTTTCATGTCCTTCACCTTTGAAAAACACTTTACCCGATCCGTGGTATGCTTTGCAGGCGAAATATGCAAAATTGAAATAAACTGAATATGTCTGCTGCTACCAATCAGGAGAATCTTATGACTATGCAATTATCTTGTTGCAACACCGACGTGTACTGATTCCGTATACGGAACAAACACTAATTCT</canonical>
            <polymorphic>CTGTATACTGAAAAGTTTCGTTAATATGATGAATATTAAAATCTGAAATTCTCTATTTAAGACGGGAGGTAGTGACTTGGAATTTCTAATAGCTTTTCATCTTGATCTGGAATTATTTTTCGTAGTATTGAAACATCACTTGGCCCAATTCTAGTTTATTTTCAACATACTCAAAAGTTCAAGTCACAATATTCAAATCTTTTGATTTTCTGACTTCTGCATAAATCATGAGTACTCGTTTTCCCACGGCTGTTTATCGAAGAACTAGACGGGTGCACCTGTTTTTTTTCGATTCTGAACTTTTGAACAAAGTTGAACGAAAATCTCCCAACAGAAAATTCAGGAAGTTCGATGAATTATGAAACATGAAATTGGAGTTTCAAAAGGCAATTTTTTGTGATCTAGGTCAGAAAAAAGAGAATTCAAACAGAATTAATATTGAAATTTTATTTTCCCGGTTGGATGTTTTTTTTGGGAATACCGAATCGGACATTTTGTARTTTCCATCTTCAAGATTTAATAATAGCAGGTTTTCAAGAAAATTCATTCCATTTCTTCTTTCCTCTTCATTCAAAAATGGTCAAGATCTTAACGGAGGGGGGAACAGGAGATCTTTCCGAATTTTTTTGGAGTTACGATATGCATTCTGACGTAATGGTGTATAGTTTTTAGTGTTGGGGGTTCGGCCGCCTTATTGTTAGCATGTTCCACCGTAGATCAACTTGTAGCGGCGCGGTCGGCCCCTCCGACAGTTTGACTAAAAGTTTAACTCCTCGAGGGTCGTATATCAACAGAATTTCGAGAAAATTACTTTTTCATGTCCTTCACCTTTGAAAAACACTTTACCCGATCCGTGGTATGCTTTGCAGGCGAAATATGCAAAATTGAAATAAACTGAATATGTCTGCTGCTACCAATCAGGAGAATCTTATGACTATGCAATTATCTTGTTGCAACACCGACGTGTACTGATTCCGTATACGGAACAAACACTAATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>190 175 79 77 58 56 54 46 42 36 34 31 30 19 18 15 12 11 11 6</canonical_bands>
                <polymorphic_bands>190 175 98 79 77 58 54 46 36 34 31 30 19 18 15 12 11 11 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATGAATTATGAAACATGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTAAGATCTTGACCATTTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CGATGAATTATGAAACATGAAATTGGAGTTTCAAAAGGCAATTTTTTGTGATCTAGGTCAGAAAAAAGAGAATTCAAACAGAATTAATATTGAAATTTTATTTTCCCGGTTGGATGTTTTTTTTGGGAATACCGAATCGGACATTTTGTAATTTCCATCTTCAAGATTTAATAATAGCAGGTTTTCAAGAAAATTCATTCCATTTCTTCTTTCCTCTTCATTCAAAAATGGTCAAGATCTTAA</canonical_amplicon>
		<polymorphic_amplicon>CGATGAATTATGAAACATGAAATTGGAGTTTCAAAAGGCAATTTTTTGTGATCTAGGTCAGAAAAAAGAGAATTCAAACAGAATTAATATTGAAATTTTATTTTCCCGGTTGGATGTTTTTTTTGGGAATACCGAATCGGACATTTTGTARTTTCCATCTTCAAGATTTAATAATAGCAGGTTTTCAAGAAAATTCATTCCATTTCTTCTTTCCTCTTCATTCAAAAATGGTCAAGATCTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31243</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>74225</contig_pos>
        <strand>+</strand>
        <context>ATTCATTCCA[C/T]TTCTTCTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCATCTTCAAGATTTAATAATAGCAGGTTTTCAAGAAAATTCATTCCA</left_flank>
        <right_flank>TTCTTCTTTCCTCTTCATTCAAAAATGGTCAAGATCTTAACGGAGGGGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATTTAAGACGGGAGGTAGTGACTTGGAATTTCTAATAGCTTTTCATCTTGATCTGGAATTATTTTTCGTAGTATTGAAACATCACTTGGCCCAATTCTAGTTTATTTTCAACATACTCAAAAGTTCAAGTCACAATATTCAAATCTTTTGATTTTCTGACTTCTGCATAAATCATGAGTACTCGTTTTCCCACGGCTGTTTATCGAAGAACTAGACGGGTGCACCTGTTTTTTTTCGATTCTGAACTTTTGAACAAAGTTGAACGAAAATCTCCCAACAGAAAATTCAGGAAGTTCGATGAATTATGAAACATGAAATTGGAGTTTCAAAAGGCAATTTTTTGTGATCTAGGTCAGAAAAAAGAGAATTCAAACAGAATTAATATTGAAATTTTATTTTCCCGGTTGGATGTTTTTTTTGGGAATACCGAATCGGACATTTTGTAATTTCCATCTTCAAGATTTAATAATAGCAGGTTTTCAAGAAAATTCATTCCATTTCTTCTTTCCTCTTCATTCAAAAATGGTCAAGATCTTAACGGAGGGGGGAACAGGAGATCTTTCCGAATTTTTTTGGAGTTACGATATGCATTCTGACGTAATGGTGTATAGTTTTTAGTGTTGGGGGTTCGGCCGCCTTATTGTTAGCATGTTCCACCGTAGATCAACTTGTAGCGGCGCGGTCGGCCCCTCCGACAGTTTGACTAAAAGTTTAACTCCTCGAGGGTCGTATATCAACAGAATTTCGAGAAAATTACTTTTTCATGTCCTTCACCTTTGAAAAACACTTTACCCGATCCGTGGTATGCTTTGCAGGCGAAATATGCAAAATTGAAATAAACTGAATATGTCTGCTGCTACCAATCAGGAGAATCTTATGACTATGCAATTATCTTGTTGCAACACCGACGTGTACTGATTCCGTATACGGAACAAACACTAATTCTTCGAATGTTTGTCGTTGAAAATATTTTAGTGATGCTTGTAGGCTTTGAACTC</canonical>
            <polymorphic>CTATTTAAGACGGGAGGTAGTGACTTGGAATTTCTAATAGCTTTTCATCTTGATCTGGAATTATTTTTCGTAGTATTGAAACATCACTTGGCCCAATTCTAGTTTATTTTCAACATACTCAAAAGTTCAAGTCACAATATTCAAATCTTTTGATTTTCTGACTTCTGCATAAATCATGAGTACTCGTTTTCCCACGGCTGTTTATCGAAGAACTAGACGGGTGCACCTGTTTTTTTTCGATTCTGAACTTTTGAACAAAGTTGAACGAAAATCTCCCAACAGAAAATTCAGGAAGTTCGATGAATTATGAAACATGAAATTGGAGTTTCAAAAGGCAATTTTTTGTGATCTAGGTCAGAAAAAAGAGAATTCAAACAGAATTAATATTGAAATTTTATTTTCCCGGTTGGATGTTTTTTTTGGGAATACCGAATCGGACATTTTGTAATTTCCATCTTCAAGATTTAATAATAGCAGGTTTTCAAGAAAATTCATTCCAYTTCTTCTTTCCTCTTCATTCAAAAATGGTCAAGATCTTAACGGAGGGGGGAACAGGAGATCTTTCCGAATTTTTTTGGAGTTACGATATGCATTCTGACGTAATGGTGTATAGTTTTTAGTGTTGGGGGTTCGGCCGCCTTATTGTTAGCATGTTCCACCGTAGATCAACTTGTAGCGGCGCGGTCGGCCCCTCCGACAGTTTGACTAAAAGTTTAACTCCTCGAGGGTCGTATATCAACAGAATTTCGAGAAAATTACTTTTTCATGTCCTTCACCTTTGAAAAACACTTTACCCGATCCGTGGTATGCTTTGCAGGCGAAATATGCAAAATTGAAATAAACTGAATATGTCTGCTGCTACCAATCAGGAGAATCTTATGACTATGCAATTATCTTGTTGCAACACCGACGTGTACTGATTCCGTATACGGAACAAACACTAATTCTTCGAATGTTTGTCGTTGAAAATATTTTAGTGATGCTTGTAGGCTTTGAACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTATGAAACATGAAATTGGAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTCGGAAAGATCTCCTGTT</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>ATTATGAAACATGAAATTGGAGTTTCAAAAGGCAATTTTTTGTGATCTAGGTCAGAAAAAAGAGAATTCAAACAGAATTAATATTGAAATTTTATTTTCCCGGTTGGATGTTTTTTTTGGGAATACCGAATCGGACATTTTGTAATTTCCATCTTCAAGATTTAATAATAGCAGGTTTTCAAGAAAATTCATTCCATTTCTTCTTTCCTCTTCATTCAAAAATGGTCAAGATCTTAACGGAGGGGGGAACAGGAGATCTTTCCGAAT</canonical_amplicon>
		<polymorphic_amplicon>ATTATGAAACATGAAATTGGAGTTTCAAAAGGCAATTTTTTGTGATCTAGGTCAGAAAAAAGAGAATTCAAACAGAATTAATATTGAAATTTTATTTTCCCGGTTGGATGTTTTTTTTGGGAATACCGAATCGGACATTTTGTAATTTCCATCTTCAAGATTTAATAATAGCAGGTTTTCAAGAAAATTCATTCCAYTTCTTCTTTCCTCTTCATTCAAAAATGGTCAAGATCTTAACGGAGGGGGGAACAGGAGATCTTTCCGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31244</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>74266</contig_pos>
        <strand>+</strand>
        <context>AAGATCTTAA[A/C]GGAGGGGGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCATTCCATTTCTTCTTTCCTCTTCATTCAAAAATGGTCAAGATCTTAA</left_flank>
        <right_flank>GGAGGGGGGAACAGGAGATCTTTCCGAATTTTTTTGGAGTTACGATATGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCATCTTGATCTGGAATTATTTTTCGTAGTATTGAAACATCACTTGGCCCAATTCTAGTTTATTTTCAACATACTCAAAAGTTCAAGTCACAATATTCAAATCTTTTGATTTTCTGACTTCTGCATAAATCATGAGTACTCGTTTTCCCACGGCTGTTTATCGAAGAACTAGACGGGTGCACCTGTTTTTTTTCGATTCTGAACTTTTGAACAAAGTTGAACGAAAATCTCCCAACAGAAAATTCAGGAAGTTCGATGAATTATGAAACATGAAATTGGAGTTTCAAAAGGCAATTTTTTGTGATCTAGGTCAGAAAAAAGAGAATTCAAACAGAATTAATATTGAAATTTTATTTTCCCGGTTGGATGTTTTTTTTGGGAATACCGAATCGGACATTTTGTAATTTCCATCTTCAAGATTTAATAATAGCAGGTTTTCAAGAAAATTCATTCCATTTCTTCTTTCCTCTTCATTCAAAAATGGTCAAGATCTTAACGGAGGGGGGAACAGGAGATCTTTCCGAATTTTTTTGGAGTTACGATATGCATTCTGACGTAATGGTGTATAGTTTTTAGTGTTGGGGGTTCGGCCGCCTTATTGTTAGCATGTTCCACCGTAGATCAACTTGTAGCGGCGCGGTCGGCCCCTCCGACAGTTTGACTAAAAGTTTAACTCCTCGAGGGTCGTATATCAACAGAATTTCGAGAAAATTACTTTTTCATGTCCTTCACCTTTGAAAAACACTTTACCCGATCCGTGGTATGCTTTGCAGGCGAAATATGCAAAATTGAAATAAACTGAATATGTCTGCTGCTACCAATCAGGAGAATCTTATGACTATGCAATTATCTTGTTGCAACACCGACGTGTACTGATTCCGTATACGGAACAAACACTAATTCTTCGAATGTTTGTCGTTGAAAATATTTTAGTGATGCTTGTAGGCTTTGAACTCTTCGTTTGAACTTTTGGTAATGTGTCATTTTCCAGTTTATC</canonical>
            <polymorphic>TTTTCATCTTGATCTGGAATTATTTTTCGTAGTATTGAAACATCACTTGGCCCAATTCTAGTTTATTTTCAACATACTCAAAAGTTCAAGTCACAATATTCAAATCTTTTGATTTTCTGACTTCTGCATAAATCATGAGTACTCGTTTTCCCACGGCTGTTTATCGAAGAACTAGACGGGTGCACCTGTTTTTTTTCGATTCTGAACTTTTGAACAAAGTTGAACGAAAATCTCCCAACAGAAAATTCAGGAAGTTCGATGAATTATGAAACATGAAATTGGAGTTTCAAAAGGCAATTTTTTGTGATCTAGGTCAGAAAAAAGAGAATTCAAACAGAATTAATATTGAAATTTTATTTTCCCGGTTGGATGTTTTTTTTGGGAATACCGAATCGGACATTTTGTAATTTCCATCTTCAAGATTTAATAATAGCAGGTTTTCAAGAAAATTCATTCCATTTCTTCTTTCCTCTTCATTCAAAAATGGTCAAGATCTTAAMGGAGGGGGGAACAGGAGATCTTTCCGAATTTTTTTGGAGTTACGATATGCATTCTGACGTAATGGTGTATAGTTTTTAGTGTTGGGGGTTCGGCCGCCTTATTGTTAGCATGTTCCACCGTAGATCAACTTGTAGCGGCGCGGTCGGCCCCTCCGACAGTTTGACTAAAAGTTTAACTCCTCGAGGGTCGTATATCAACAGAATTTCGAGAAAATTACTTTTTCATGTCCTTCACCTTTGAAAAACACTTTACCCGATCCGTGGTATGCTTTGCAGGCGAAATATGCAAAATTGAAATAAACTGAATATGTCTGCTGCTACCAATCAGGAGAATCTTATGACTATGCAATTATCTTGTTGCAACACCGACGTGTACTGATTCCGTATACGGAACAAACACTAATTCTTCGAATGTTTGTCGTTGAAAATATTTTAGTGATGCTTGTAGGCTTTGAACTCTTCGTTTGAACTTTTGGTAATGTGTCATTTTCCAGTTTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGTTTTCAAGAAAATTCATTC</pcr_primer_p1>
		<pcr_primer_p2>GGTGAAGGACATGAAAAAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>302</pcr_amplicon_size>
		<canonical_amplicon>AGGTTTTCAAGAAAATTCATTCCATTTCTTCTTTCCTCTTCATTCAAAAATGGTCAAGATCTTAACGGAGGGGGGAACAGGAGATCTTTCCGAATTTTTTTGGAGTTACGATATGCATTCTGACGTAATGGTGTATAGTTTTTAGTGTTGGGGGTTCGGCCGCCTTATTGTTAGCATGTTCCACCGTAGATCAACTTGTAGCGGCGCGGTCGGCCCCTCCGACAGTTTGACTAAAAGTTTAACTCCTCGAGGGTCGTATATCAACAGAATTTCGAGAAAATTACTTTTTCATGTCCTTCACC</canonical_amplicon>
		<polymorphic_amplicon>AGGTTTTCAAGAAAATTCATTCCATTTCTTCTTTCCTCTTCATTCAAAAATGGTCAAGATCTTAAMGGAGGGGGGAACAGGAGATCTTTCCGAATTTTTTTGGAGTTACGATATGCATTCTGACGTAATGGTGTATAGTTTTTAGTGTTGGGGGTTCGGCCGCCTTATTGTTAGCATGTTCCACCGTAGATCAACTTGTAGCGGCGCGGTCGGCCCCTCCGACAGTTTGACTAAAAGTTTAACTCCTCGAGGGTCGTATATCAACAGAATTTCGAGAAAATTACTTTTTCATGTCCTTCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31245</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>121988</contig_pos>
        <strand>+</strand>
        <context>CTCTAACGGA[A/G]TCATCAAGGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCTCCCATTAATTGGTGTCACTGGAAATCCGTTTAAAACCTCTAACGGA</left_flank>
        <right_flank>TCATCAAGGCGGCTTCGGAACCCTATCTGATCAATGAAGAAGTTGTGATA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATGCAAGTTTGATTATGGATAAATGCGAATTTGTGAGCAGCAACTACATTGATTTTGACGGTGGAGACTCCGCGGTGTCCCTCAAAAACGTTACTGGAAACGGAAACCAACTGACGATATCCAATTGCAAATTTACCAAAAACACCATGCACGACGTCATAAAAATATTGGAAACCGATTCTTCGGCGACTCAGATCCAGATTTCAGCCAACGAATTCAATCAGAATCTTGCAAACTCCATCATCACCACTAATTCAGCTAATGCTTCAATTACTGAGAACAGATTTCAAGACAAACGATCCACGTGCGAGATCACTTATTACTCTCCAGCAATCCCAAAACCTGAAGATATCTCAGACAACAAAATGCTCTCTGGGAACAAGAATCCGATTTGCACTGGGTACGGATATCAAACCGTTCAAATGGATGAACCTGTTACTTCCACTCCTCTCCCATTAATTGGTGTCACTGGAAATCCGTTTAAAACCTCTAACGGAGTCATCAAGGCGGCTTCGGAACCCTATCTGATCAATGAAGAAGTTGTGATAAACATTGGAGAAACAGTTGTGATTGAACCGGGTACAATTCTAGATTTTGCACCTGGAGTCGGGATTACTGTATCGGGTCGACTGATTATGAATGGGACTGAAGAGAAGCCAATTGTGACTCGTGGTCAGAATGATAACACGTGGCGAGGGATCGTAGCAAAGCCAGAAGGTGTCCTAGATGTGAAAAATGTGGTTTCCGAGGATGCATCAATTGGAATATGGATAGATTCTCAAAAAGTGAAAATAGAAAATGGACGGATTGTTAGACCAGTAGTACATGGAATAGAGATAACACAAAACTCTAATGATGTTGTGGATTTGGGAGGGTTGATAATTGAAGAAGCTAGTGAATCAGCAATCGGAGTGGACGAAAGAAGAGATGATCTACTTATCAAGAACACTAAAATACAGAATGGAGTTGGTAGTGGAATCGATTTCATGACACCTACA</canonical>
            <polymorphic>GAATGCAAGTTTGATTATGGATAAATGCGAATTTGTGAGCAGCAACTACATTGATTTTGACGGTGGAGACTCCGCGGTGTCCCTCAAAAACGTTACTGGAAACGGAAACCAACTGACGATATCCAATTGCAAATTTACCAAAAACACCATGCACGACGTCATAAAAATATTGGAAACCGATTCTTCGGCGACTCAGATCCAGATTTCAGCCAACGAATTCAATCAGAATCTTGCAAACTCCATCATCACCACTAATTCAGCTAATGCTTCAATTACTGAGAACAGATTTCAAGACAAACGATCCACGTGCGAGATCACTTATTACTCTCCAGCAATCCCAAAACCTGAAGATATCTCAGACAACAAAATGCTCTCTGGGAACAAGAATCCGATTTGCACTGGGTACGGATATCAAACCGTTCAAATGGATGAACCTGTTACTTCCACTCCTCTCCCATTAATTGGTGTCACTGGAAATCCGTTTAAAACCTCTAACGGARTCATCAAGGCGGCTTCGGAACCCTATCTGATCAATGAAGAAGTTGTGATAAACATTGGAGAAACAGTTGTGATTGAACCGGGTACAATTCTAGATTTTGCACCTGGAGTCGGGATTACTGTATCGGGTCGACTGATTATGAATGGGACTGAAGAGAAGCCAATTGTGACTCGTGGTCAGAATGATAACACGTGGCGAGGGATCGTAGCAAAGCCAGAAGGTGTCCTAGATGTGAAAAATGTGGTTTCCGAGGATGCATCAATTGGAATATGGATAGATTCTCAAAAAGTGAAAATAGAAAATGGACGGATTGTTAGACCAGTAGTACATGGAATAGAGATAACACAAAACTCTAATGATGTTGTGGATTTGGGAGGGTTGATAATTGAAGAAGCTAGTGAATCAGCAATCGGAGTGGACGAAAGAAGAGATGATCTACTTATCAAGAACACTAAAATACAGAATGGAGTTGGTAGTGGAATCGATTTCATGACACCTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCACTTATTACTCTCCAGCAATC</pcr_primer_p1>
		<pcr_primer_p2>GTTTCTCCAATGTTTATCACAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCACTTATTACTCTCCAGCAATCCCAAAACCTGAAGATATCTCAGACAACAAAATGCTCTCTGGGAACAAGAATCCGATTTGCACTGGGTACGGATATCAAACCGTTCAAATGGATGAACCTGTTACTTCCACTCCTCTCCCATTAATTGGTGTCACTGGAAATCCGTTTAAAACCTCTAACGGAGTCATCAAGGCGGCTTCGGAACCCTATCTGATCAATGAAGAAGTTGTGATAAACATTGGAGAAAC</canonical_amplicon>
		<polymorphic_amplicon>TCACTTATTACTCTCCAGCAATCCCAAAACCTGAAGATATCTCAGACAACAAAATGCTCTCTGGGAACAAGAATCCGATTTGCACTGGGTACGGATATCAAACCGTTCAAATGGATGAACCTGTTACTTCCACTCCTCTCCCATTAATTGGTGTCACTGGAAATCCGTTTAAAACCTCTAACGGARTCATCAAGGCGGCTTCGGAACCCTATCTGATCAATGAAGAAGTTGTGATAAACATTGGAGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31246</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>122055</contig_pos>
        <strand>+</strand>
        <context>GGAGAAACAG[A/T]TGTGATTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAACCCTATCTGATCAATGAAGAAGTTGTGATAAACATTGGAGAAACAG</left_flank>
        <right_flank>TGTGATTGAACCGGGTACAATTCTAGATTTTGCACCTGGAGTCGGGATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACTCCGCGGTGTCCCTCAAAAACGTTACTGGAAACGGAAACCAACTGACGATATCCAATTGCAAATTTACCAAAAACACCATGCACGACGTCATAAAAATATTGGAAACCGATTCTTCGGCGACTCAGATCCAGATTTCAGCCAACGAATTCAATCAGAATCTTGCAAACTCCATCATCACCACTAATTCAGCTAATGCTTCAATTACTGAGAACAGATTTCAAGACAAACGATCCACGTGCGAGATCACTTATTACTCTCCAGCAATCCCAAAACCTGAAGATATCTCAGACAACAAAATGCTCTCTGGGAACAAGAATCCGATTTGCACTGGGTACGGATATCAAACCGTTCAAATGGATGAACCTGTTACTTCCACTCCTCTCCCATTAATTGGTGTCACTGGAAATCCGTTTAAAACCTCTAACGGAGTCATCAAGGCGGCTTCGGAACCCTATCTGATCAATGAAGAAGTTGTGATAAACATTGGAGAAACAGTTGTGATTGAACCGGGTACAATTCTAGATTTTGCACCTGGAGTCGGGATTACTGTATCGGGTCGACTGATTATGAATGGGACTGAAGAGAAGCCAATTGTGACTCGTGGTCAGAATGATAACACGTGGCGAGGGATCGTAGCAAAGCCAGAAGGTGTCCTAGATGTGAAAAATGTGGTTTCCGAGGATGCATCAATTGGAATATGGATAGATTCTCAAAAAGTGAAAATAGAAAATGGACGGATTGTTAGACCAGTAGTACATGGAATAGAGATAACACAAAACTCTAATGATGTTGTGGATTTGGGAGGGTTGATAATTGAAGAAGCTAGTGAATCAGCAATCGGAGTGGACGAAAGAAGAGATGATCTACTTATCAAGAACACTAAAATACAGAATGGAGTTGGTAGTGGAATCGATTTCATGACACCTACAGGTAAGGGAAAATCAGTTTGTATTTCAAATAAATTTATTTTCAGGAAACATTGAACTCCAGAATATT</canonical>
            <polymorphic>GACTCCGCGGTGTCCCTCAAAAACGTTACTGGAAACGGAAACCAACTGACGATATCCAATTGCAAATTTACCAAAAACACCATGCACGACGTCATAAAAATATTGGAAACCGATTCTTCGGCGACTCAGATCCAGATTTCAGCCAACGAATTCAATCAGAATCTTGCAAACTCCATCATCACCACTAATTCAGCTAATGCTTCAATTACTGAGAACAGATTTCAAGACAAACGATCCACGTGCGAGATCACTTATTACTCTCCAGCAATCCCAAAACCTGAAGATATCTCAGACAACAAAATGCTCTCTGGGAACAAGAATCCGATTTGCACTGGGTACGGATATCAAACCGTTCAAATGGATGAACCTGTTACTTCCACTCCTCTCCCATTAATTGGTGTCACTGGAAATCCGTTTAAAACCTCTAACGGAGTCATCAAGGCGGCTTCGGAACCCTATCTGATCAATGAAGAAGTTGTGATAAACATTGGAGAAACAGWTGTGATTGAACCGGGTACAATTCTAGATTTTGCACCTGGAGTCGGGATTACTGTATCGGGTCGACTGATTATGAATGGGACTGAAGAGAAGCCAATTGTGACTCGTGGTCAGAATGATAACACGTGGCGAGGGATCGTAGCAAAGCCAGAAGGTGTCCTAGATGTGAAAAATGTGGTTTCCGAGGATGCATCAATTGGAATATGGATAGATTCTCAAAAAGTGAAAATAGAAAATGGACGGATTGTTAGACCAGTAGTACATGGAATAGAGATAACACAAAACTCTAATGATGTTGTGGATTTGGGAGGGTTGATAATTGAAGAAGCTAGTGAATCAGCAATCGGAGTGGACGAAAGAAGAGATGATCTACTTATCAAGAACACTAAAATACAGAATGGAGTTGGTAGTGGAATCGATTTCATGACACCTACAGGTAAGGGAAAATCAGTTTGTATTTCAAATAAATTTATTTTCAGGAAACATTGAACTCCAGAATATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>448 351 147 54</canonical_bands>
                <polymorphic_bands>448 351 201</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATGGATGAACCTGTTACTT</pcr_primer_p1>
		<pcr_primer_p2>GAGTCACAATTGGCTTCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAATGGATGAACCTGTTACTTCCACTCCTCTCCCATTAATTGGTGTCACTGGAAATCCGTTTAAAACCTCTAACGGAGTCATCAAGGCGGCTTCGGAACCCTATCTGATCAATGAAGAAGTTGTGATAAACATTGGAGAAACAGTTGTGATTGAACCGGGTACAATTCTAGATTTTGCACCTGGAGTCGGGATTACTGTATCGGGTCGACTGATTATGAATGGGACTGAAGAGAAGCCAATTGTGACTC</canonical_amplicon>
		<polymorphic_amplicon>CAAATGGATGAACCTGTTACTTCCACTCCTCTCCCATTAATTGGTGTCACTGGAAATCCGTTTAAAACCTCTAACGGAGTCATCAAGGCGGCTTCGGAACCCTATCTGATCAATGAAGAAGTTGTGATAAACATTGGAGAAACAGWTGTGATTGAACCGGGTACAATTCTAGATTTTGCACCTGGAGTCGGGATTACTGTATCGGGTCGACTGATTATGAATGGGACTGAAGAGAAGCCAATTGTGACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31247</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>122172</contig_pos>
        <strand>+</strand>
        <context>GGTCAGAATG[A/G]TAACACGTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTATGAATGGGACTGAAGAGAAGCCAATTGTGACTCGTGGTCAGAATG</left_flank>
        <right_flank>TAACACGTGGCGAGGGATCGTAGCAAAGCCAGAAGGTGTCCTAGATGTGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGCGACTCAGATCCAGATTTCAGCCAACGAATTCAATCAGAATCTTGCAAACTCCATCATCACCACTAATTCAGCTAATGCTTCAATTACTGAGAACAGATTTCAAGACAAACGATCCACGTGCGAGATCACTTATTACTCTCCAGCAATCCCAAAACCTGAAGATATCTCAGACAACAAAATGCTCTCTGGGAACAAGAATCCGATTTGCACTGGGTACGGATATCAAACCGTTCAAATGGATGAACCTGTTACTTCCACTCCTCTCCCATTAATTGGTGTCACTGGAAATCCGTTTAAAACCTCTAACGGAGTCATCAAGGCGGCTTCGGAACCCTATCTGATCAATGAAGAAGTTGTGATAAACATTGGAGAAACAGTTGTGATTGAACCGGGTACAATTCTAGATTTTGCACCTGGAGTCGGGATTACTGTATCGGGTCGACTGATTATGAATGGGACTGAAGAGAAGCCAATTGTGACTCGTGGTCAGAATGATAACACGTGGCGAGGGATCGTAGCAAAGCCAGAAGGTGTCCTAGATGTGAAAAATGTGGTTTCCGAGGATGCATCAATTGGAATATGGATAGATTCTCAAAAAGTGAAAATAGAAAATGGACGGATTGTTAGACCAGTAGTACATGGAATAGAGATAACACAAAACTCTAATGATGTTGTGGATTTGGGAGGGTTGATAATTGAAGAAGCTAGTGAATCAGCAATCGGAGTGGACGAAAGAAGAGATGATCTACTTATCAAGAACACTAAAATACAGAATGGAGTTGGTAGTGGAATCGATTTCATGACACCTACAGGTAAGGGAAAATCAGTTTGTATTTCAAATAAATTTATTTTCAGGAAACATTGAACTCCAGAATATTATCATTGATAACATGGGAGCTTATGGAATTCATATTTCTGAATTCCCATCATCTCCACTACACGCAGTACTTTTGGAAAATGTTAGTGTAACCAATCAAAAAAGAGGACATGCCGGA</canonical>
            <polymorphic>TCGGCGACTCAGATCCAGATTTCAGCCAACGAATTCAATCAGAATCTTGCAAACTCCATCATCACCACTAATTCAGCTAATGCTTCAATTACTGAGAACAGATTTCAAGACAAACGATCCACGTGCGAGATCACTTATTACTCTCCAGCAATCCCAAAACCTGAAGATATCTCAGACAACAAAATGCTCTCTGGGAACAAGAATCCGATTTGCACTGGGTACGGATATCAAACCGTTCAAATGGATGAACCTGTTACTTCCACTCCTCTCCCATTAATTGGTGTCACTGGAAATCCGTTTAAAACCTCTAACGGAGTCATCAAGGCGGCTTCGGAACCCTATCTGATCAATGAAGAAGTTGTGATAAACATTGGAGAAACAGTTGTGATTGAACCGGGTACAATTCTAGATTTTGCACCTGGAGTCGGGATTACTGTATCGGGTCGACTGATTATGAATGGGACTGAAGAGAAGCCAATTGTGACTCGTGGTCAGAATGRTAACACGTGGCGAGGGATCGTAGCAAAGCCAGAAGGTGTCCTAGATGTGAAAAATGTGGTTTCCGAGGATGCATCAATTGGAATATGGATAGATTCTCAAAAAGTGAAAATAGAAAATGGACGGATTGTTAGACCAGTAGTACATGGAATAGAGATAACACAAAACTCTAATGATGTTGTGGATTTGGGAGGGTTGATAATTGAAGAAGCTAGTGAATCAGCAATCGGAGTGGACGAAAGAAGAGATGATCTACTTATCAAGAACACTAAAATACAGAATGGAGTTGGTAGTGGAATCGATTTCATGACACCTACAGGTAAGGGAAAATCAGTTTGTATTTCAAATAAATTTATTTTCAGGAAACATTGAACTCCAGAATATTATCATTGATAACATGGGAGCTTATGGAATTCATATTTCTGAATTCCCATCATCTCCACTACACGCAGTACTTTTGGAAAATGTTAGTGTAACCAATCAAAAAAGAGGACATGCCGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATGAAGAAGTTGTGATAAACA</pcr_primer_p1>
		<pcr_primer_p2>ATCTATCCATATTCCAATTGATG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAATGAAGAAGTTGTGATAAACATTGGAGAAACAGTTGTGATTGAACCGGGTACAATTCTAGATTTTGCACCTGGAGTCGGGATTACTGTATCGGGTCGACTGATTATGAATGGGACTGAAGAGAAGCCAATTGTGACTCGTGGTCAGAATGATAACACGTGGCGAGGGATCGTAGCAAAGCCAGAAGGTGTCCTAGATGTGAAAAATGTGGTTTCCGAGGATGCATCAATTGGAATATGGATAGAT</canonical_amplicon>
		<polymorphic_amplicon>CAATGAAGAAGTTGTGATAAACATTGGAGAAACAGTTGTGATTGAACCGGGTACAATTCTAGATTTTGCACCTGGAGTCGGGATTACTGTATCGGGTCGACTGATTATGAATGGGACTGAAGAGAAGCCAATTGTGACTCGTGGTCAGAATGRTAACACGTGGCGAGGGATCGTAGCAAAGCCAGAAGGTGTCCTAGATGTGAAAAATGTGGTTTCCGAGGATGCATCAATTGGAATATGGATAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31248</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>122432</contig_pos>
        <strand>+</strand>
        <context>TCTACTTATC[A/C]AGAACACTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTAGTGAATCAGCAATCGGAGTGGACGAAAGAAGAGATGATCTACTTATC</left_flank>
        <right_flank>AGAACACTAAAATACAGAATGGAGTTGGTAGTGGAATCGATTTCATGACA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTCCTCTCCCATTAATTGGTGTCACTGGAAATCCGTTTAAAACCTCTAACGGAGTCATCAAGGCGGCTTCGGAACCCTATCTGATCAATGAAGAAGTTGTGATAAACATTGGAGAAACAGTTGTGATTGAACCGGGTACAATTCTAGATTTTGCACCTGGAGTCGGGATTACTGTATCGGGTCGACTGATTATGAATGGGACTGAAGAGAAGCCAATTGTGACTCGTGGTCAGAATGATAACACGTGGCGAGGGATCGTAGCAAAGCCAGAAGGTGTCCTAGATGTGAAAAATGTGGTTTCCGAGGATGCATCAATTGGAATATGGATAGATTCTCAAAAAGTGAAAATAGAAAATGGACGGATTGTTAGACCAGTAGTACATGGAATAGAGATAACACAAAACTCTAATGATGTTGTGGATTTGGGAGGGTTGATAATTGAAGAAGCTAGTGAATCAGCAATCGGAGTGGACGAAAGAAGAGATGATCTACTTATCAAGAACACTAAAATACAGAATGGAGTTGGTAGTGGAATCGATTTCATGACACCTACAGGTAAGGGAAAATCAGTTTGTATTTCAAATAAATTTATTTTCAGGAAACATTGAACTCCAGAATATTATCATTGATAACATGGGAGCTTATGGAATTCATATTTCTGAATTCCCATCATCTCCACTACACGCAGTACTTTTGGAAAATGTTAGTGTAACCAATCAAAAAAGAGGACATGCCGGAATTCTGATATCTGGAGGGTGGATTCAAAATGTTGGGCTGCATAATTTGAACTGTTCAAATAATTATGTTCCAAGTTTAATAGTTGCCTTGGAGTGTAATGATGGAAATGAGAAATTGATCAAAATGGATAACAATTCATTTGAAAGGAATTCTGATATAGTTCAACACATTCAGTTGGGAAGTTGTGCAAATCTTCAAGTGAGTTAGAGTTAGAGTTAGAATTCCAAACATTTATTTTCTTATTTTTCAGATGGAAAGAA</canonical>
            <polymorphic>CACTCCTCTCCCATTAATTGGTGTCACTGGAAATCCGTTTAAAACCTCTAACGGAGTCATCAAGGCGGCTTCGGAACCCTATCTGATCAATGAAGAAGTTGTGATAAACATTGGAGAAACAGTTGTGATTGAACCGGGTACAATTCTAGATTTTGCACCTGGAGTCGGGATTACTGTATCGGGTCGACTGATTATGAATGGGACTGAAGAGAAGCCAATTGTGACTCGTGGTCAGAATGATAACACGTGGCGAGGGATCGTAGCAAAGCCAGAAGGTGTCCTAGATGTGAAAAATGTGGTTTCCGAGGATGCATCAATTGGAATATGGATAGATTCTCAAAAAGTGAAAATAGAAAATGGACGGATTGTTAGACCAGTAGTACATGGAATAGAGATAACACAAAACTCTAATGATGTTGTGGATTTGGGAGGGTTGATAATTGAAGAAGCTAGTGAATCAGCAATCGGAGTGGACGAAAGAAGAGATGATCTACTTATCMAGAACACTAAAATACAGAATGGAGTTGGTAGTGGAATCGATTTCATGACACCTACAGGTAAGGGAAAATCAGTTTGTATTTCAAATAAATTTATTTTCAGGAAACATTGAACTCCAGAATATTATCATTGATAACATGGGAGCTTATGGAATTCATATTTCTGAATTCCCATCATCTCCACTACACGCAGTACTTTTGGAAAATGTTAGTGTAACCAATCAAAAAAGAGGACATGCCGGAATTCTGATATCTGGAGGGTGGATTCAAAATGTTGGGCTGCATAATTTGAACTGTTCAAATAATTATGTTCCAAGTTTAATAGTTGCCTTGGAGTGTAATGATGGAAATGAGAAATTGATCAAAATGGATAACAATTCATTTGAAAGGAATTCTGATATAGTTCAACACATTCAGTTGGGAAGTTGTGCAAATCTTCAAGTGAGTTAGAGTTAGAGTTAGAATTCCAAACATTTATTTTCTTATTTTTCAGATGGAAAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGGATAGATTCTCAAAAAGTGA</pcr_primer_p1>
		<pcr_primer_p2>AACTGATTTTCCCTTACCTGTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGGATAGATTCTCAAAAAGTGAAAATAGAAAATGGACGGATTGTTAGACCAGTAGTACATGGAATAGAGATAACACAAAACTCTAATGATGTTGTGGATTTGGGAGGGTTGATAATTGAAGAAGCTAGTGAATCAGCAATCGGAGTGGACGAAAGAAGAGATGATCTACTTATCAAGAACACTAAAATACAGAATGGAGTTGGTAGTGGAATCGATTTCATGACACCTACAGGTAAGGGAAAATCAGTT</canonical_amplicon>
		<polymorphic_amplicon>ATGGATAGATTCTCAAAAAGTGAAAATAGAAAATGGACGGATTGTTAGACCAGTAGTACATGGAATAGAGATAACACAAAACTCTAATGATGTTGTGGATTTGGGAGGGTTGATAATTGAAGAAGCTAGTGAATCAGCAATCGGAGTGGACGAAAGAAGAGATGATCTACTTATCMAGAACACTAAAATACAGAATGGAGTTGGTAGTGGAATCGATTTCATGACACCTACAGGTAAGGGAAAATCAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31249</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>122443</contig_pos>
        <strand>+</strand>
        <context>AGAACACTAA[A/T]MTRCAGAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCAATCGGAGTGGACGAAAGAAGAGATGATCTACTTATCAAGAACACTAA</left_flank>
        <right_flank>ATACAGAATGGAGTTGGTAGTGGAATCGATTTCATGACACCTACAGGTAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTAATTGGTGTCACTGGAAATCCGTTTAAAACCTCTAACGGAGTCATCAAGGCGGCTTCGGAACCCTATCTGATCAATGAAGAAGTTGTGATAAACATTGGAGAAACAGTTGTGATTGAACCGGGTACAATTCTAGATTTTGCACCTGGAGTCGGGATTACTGTATCGGGTCGACTGATTATGAATGGGACTGAAGAGAAGCCAATTGTGACTCGTGGTCAGAATGATAACACGTGGCGAGGGATCGTAGCAAAGCCAGAAGGTGTCCTAGATGTGAAAAATGTGGTTTCCGAGGATGCATCAATTGGAATATGGATAGATTCTCAAAAAGTGAAAATAGAAAATGGACGGATTGTTAGACCAGTAGTACATGGAATAGAGATAACACAAAACTCTAATGATGTTGTGGATTTGGGAGGGTTGATAATTGAAGAAGCTAGTGAATCAGCAATCGGAGTGGACGAAAGAAGAGATGATCTACTTATCAAGAACACTAAAATACAGAATGGAGTTGGTAGTGGAATCGATTTCATGACACCTACAGGTAAGGGAAAATCAGTTTGTATTTCAAATAAATTTATTTTCAGGAAACATTGAACTCCAGAATATTATCATTGATAACATGGGAGCTTATGGAATTCATATTTCTGAATTCCCATCATCTCCACTACACGCAGTACTTTTGGAAAATGTTAGTGTAACCAATCAAAAAAGAGGACATGCCGGAATTCTGATATCTGGAGGGTGGATTCAAAATGTTGGGCTGCATAATTTGAACTGTTCAAATAATTATGTTCCAAGTTTAATAGTTGCCTTGGAGTGTAATGATGGAAATGAGAAATTGATCAAAATGGATAACAATTCATTTGAAAGGAATTCTGATATAGTTCAACACATTCAGTTGGGAAGTTGTGCAAATCTTCAAGTGAGTTAGAGTTAGAGTTAGAATTCCAAACATTTATTTTCTTATTTTTCAGATGGAAAGAAACAATTACAAT</canonical>
            <polymorphic>CATTAATTGGTGTCACTGGAAATCCGTTTAAAACCTCTAACGGAGTCATCAAGGCGGCTTCGGAACCCTATCTGATCAATGAAGAAGTTGTGATAAACATTGGAGAAACAGTTGTGATTGAACCGGGTACAATTCTAGATTTTGCACCTGGAGTCGGGATTACTGTATCGGGTCGACTGATTATGAATGGGACTGAAGAGAAGCCAATTGTGACTCGTGGTCAGAATGATAACACGTGGCGAGGGATCGTAGCAAAGCCAGAAGGTGTCCTAGATGTGAAAAATGTGGTTTCCGAGGATGCATCAATTGGAATATGGATAGATTCTCAAAAAGTGAAAATAGAAAATGGACGGATTGTTAGACCAGTAGTACATGGAATAGAGATAACACAAAACTCTAATGATGTTGTGGATTTGGGAGGGTTGATAATTGAAGAAGCTAGTGAATCAGCAATCGGAGTGGACGAAAGAAGAGATGATCTACTTATCAAGAACACTAAWATACAGAATGGAGTTGGTAGTGGAATCGATTTCATGACACCTACAGGTAAGGGAAAATCAGTTTGTATTTCAAATAAATTTATTTTCAGGAAACATTGAACTCCAGAATATTATCATTGATAACATGGGAGCTTATGGAATTCATATTTCTGAATTCCCATCATCTCCACTACACGCAGTACTTTTGGAAAATGTTAGTGTAACCAATCAAAAAAGAGGACATGCCGGAATTCTGATATCTGGAGGGTGGATTCAAAATGTTGGGCTGCATAATTTGAACTGTTCAAATAATTATGTTCCAAGTTTAATAGTTGCCTTGGAGTGTAATGATGGAAATGAGAAATTGATCAAAATGGATAACAATTCATTTGAAAGGAATTCTGATATAGTTCAACACATTCAGTTGGGAAGTTGTGCAAATCTTCAAGTGAGTTAGAGTTAGAGTTAGAATTCCAAACATTTATTTTCTTATTTTTCAGATGGAAAGAAACAATTACAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGGATAGATTCTCAAAAAGTGA</pcr_primer_p1>
		<pcr_primer_p2>AACTGATTTTCCCTTACCTGTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGGATAGATTCTCAAAAAGTGAAAATAGAAAATGGACGGATTGTTAGACCAGTAGTACATGGAATAGAGATAACACAAAACTCTAATGATGTTGTGGATTTGGGAGGGTTGATAATTGAAGAAGCTAGTGAATCAGCAATCGGAGTGGACGAAAGAAGAGATGATCTACTTATCAAGAACACTAAAATACAGAATGGAGTTGGTAGTGGAATCGATTTCATGACACCTACAGGTAAGGGAAAATCAGTT</canonical_amplicon>
		<polymorphic_amplicon>ATGGATAGATTCTCAAAAAGTGAAAATAGAAAATGGACGGATTGTTAGACCAGTAGTACATGGAATAGAGATAACACAAAACTCTAATGATGTTGTGGATTTGGGAGGGTTGATAATTGAAGAAGCTAGTGAATCAGCAATCGGAGTGGACGAAAGAAGAGATGATCTACTTATCAAGAACACTAAWATACAGAATGGAGTTGGTAGTGGAATCGATTTCATGACACCTACAGGTAAGGGAAAATCAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31250</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>122444</contig_pos>
        <strand>+</strand>
        <context>GAACACTAAW[A/C]TRCAGAATGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAATCGGAGTGGACGAAAGAAGAGATGATCTACTTATCAAGAACACTAAA</left_flank>
        <right_flank>TACAGAATGGAGTTGGTAGTGGAATCGATTTCATGACACCTACAGGTAAG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAATTGGTGTCACTGGAAATCCGTTTAAAACCTCTAACGGAGTCATCAAGGCGGCTTCGGAACCCTATCTGATCAATGAAGAAGTTGTGATAAACATTGGAGAAACAGTTGTGATTGAACCGGGTACAATTCTAGATTTTGCACCTGGAGTCGGGATTACTGTATCGGGTCGACTGATTATGAATGGGACTGAAGAGAAGCCAATTGTGACTCGTGGTCAGAATGATAACACGTGGCGAGGGATCGTAGCAAAGCCAGAAGGTGTCCTAGATGTGAAAAATGTGGTTTCCGAGGATGCATCAATTGGAATATGGATAGATTCTCAAAAAGTGAAAATAGAAAATGGACGGATTGTTAGACCAGTAGTACATGGAATAGAGATAACACAAAACTCTAATGATGTTGTGGATTTGGGAGGGTTGATAATTGAAGAAGCTAGTGAATCAGCAATCGGAGTGGACGAAAGAAGAGATGATCTACTTATCAAGAACACTAAAATACAGAATGGAGTTGGTAGTGGAATCGATTTCATGACACCTACAGGTAAGGGAAAATCAGTTTGTATTTCAAATAAATTTATTTTCAGGAAACATTGAACTCCAGAATATTATCATTGATAACATGGGAGCTTATGGAATTCATATTTCTGAATTCCCATCATCTCCACTACACGCAGTACTTTTGGAAAATGTTAGTGTAACCAATCAAAAAAGAGGACATGCCGGAATTCTGATATCTGGAGGGTGGATTCAAAATGTTGGGCTGCATAATTTGAACTGTTCAAATAATTATGTTCCAAGTTTAATAGTTGCCTTGGAGTGTAATGATGGAAATGAGAAATTGATCAAAATGGATAACAATTCATTTGAAAGGAATTCTGATATAGTTCAACACATTCAGTTGGGAAGTTGTGCAAATCTTCAAGTGAGTTAGAGTTAGAGTTAGAATTCCAAACATTTATTTTCTTATTTTTCAGATGGAAAGAAACAATTACAATG</canonical>
            <polymorphic>ATTAATTGGTGTCACTGGAAATCCGTTTAAAACCTCTAACGGAGTCATCAAGGCGGCTTCGGAACCCTATCTGATCAATGAAGAAGTTGTGATAAACATTGGAGAAACAGTTGTGATTGAACCGGGTACAATTCTAGATTTTGCACCTGGAGTCGGGATTACTGTATCGGGTCGACTGATTATGAATGGGACTGAAGAGAAGCCAATTGTGACTCGTGGTCAGAATGATAACACGTGGCGAGGGATCGTAGCAAAGCCAGAAGGTGTCCTAGATGTGAAAAATGTGGTTTCCGAGGATGCATCAATTGGAATATGGATAGATTCTCAAAAAGTGAAAATAGAAAATGGACGGATTGTTAGACCAGTAGTACATGGAATAGAGATAACACAAAACTCTAATGATGTTGTGGATTTGGGAGGGTTGATAATTGAAGAAGCTAGTGAATCAGCAATCGGAGTGGACGAAAGAAGAGATGATCTACTTATCAAGAACACTAAAMTACAGAATGGAGTTGGTAGTGGAATCGATTTCATGACACCTACAGGTAAGGGAAAATCAGTTTGTATTTCAAATAAATTTATTTTCAGGAAACATTGAACTCCAGAATATTATCATTGATAACATGGGAGCTTATGGAATTCATATTTCTGAATTCCCATCATCTCCACTACACGCAGTACTTTTGGAAAATGTTAGTGTAACCAATCAAAAAAGAGGACATGCCGGAATTCTGATATCTGGAGGGTGGATTCAAAATGTTGGGCTGCATAATTTGAACTGTTCAAATAATTATGTTCCAAGTTTAATAGTTGCCTTGGAGTGTAATGATGGAAATGAGAAATTGATCAAAATGGATAACAATTCATTTGAAAGGAATTCTGATATAGTTCAACACATTCAGTTGGGAAGTTGTGCAAATCTTCAAGTGAGTTAGAGTTAGAGTTAGAATTCCAAACATTTATTTTCTTATTTTTCAGATGGAAAGAAACAATTACAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGGATAGATTCTCAAAAAGTGA</pcr_primer_p1>
		<pcr_primer_p2>AACTGATTTTCCCTTACCTGTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGGATAGATTCTCAAAAAGTGAAAATAGAAAATGGACGGATTGTTAGACCAGTAGTACATGGAATAGAGATAACACAAAACTCTAATGATGTTGTGGATTTGGGAGGGTTGATAATTGAAGAAGCTAGTGAATCAGCAATCGGAGTGGACGAAAGAAGAGATGATCTACTTATCAAGAACACTAAAATACAGAATGGAGTTGGTAGTGGAATCGATTTCATGACACCTACAGGTAAGGGAAAATCAGTT</canonical_amplicon>
		<polymorphic_amplicon>ATGGATAGATTCTCAAAAAGTGAAAATAGAAAATGGACGGATTGTTAGACCAGTAGTACATGGAATAGAGATAACACAAAACTCTAATGATGTTGTGGATTTGGGAGGGTTGATAATTGAAGAAGCTAGTGAATCAGCAATCGGAGTGGACGAAAGAAGAGATGATCTACTTATCAAGAACACTAAAMTACAGAATGGAGTTGGTAGTGGAATCGATTTCATGACACCTACAGGTAAGGGAAAATCAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31251</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>122446</contig_pos>
        <strand>+</strand>
        <context>ACACTAAWMT[A/G]CAGAATGGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCGGAGTGGACGAAAGAAGAGATGATCTACTTATCAAGAACACTAAAAT</left_flank>
        <right_flank>CAGAATGGAGTTGGTAGTGGAATCGATTTCATGACACCTACAGGTAAGGG</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTGGTGTCACTGGAAATCCGTTTAAAACCTCTAACGGAGTCATCAAGGCGGCTTCGGAACCCTATCTGATCAATGAAGAAGTTGTGATAAACATTGGAGAAACAGTTGTGATTGAACCGGGTACAATTCTAGATTTTGCACCTGGAGTCGGGATTACTGTATCGGGTCGACTGATTATGAATGGGACTGAAGAGAAGCCAATTGTGACTCGTGGTCAGAATGATAACACGTGGCGAGGGATCGTAGCAAAGCCAGAAGGTGTCCTAGATGTGAAAAATGTGGTTTCCGAGGATGCATCAATTGGAATATGGATAGATTCTCAAAAAGTGAAAATAGAAAATGGACGGATTGTTAGACCAGTAGTACATGGAATAGAGATAACACAAAACTCTAATGATGTTGTGGATTTGGGAGGGTTGATAATTGAAGAAGCTAGTGAATCAGCAATCGGAGTGGACGAAAGAAGAGATGATCTACTTATCAAGAACACTAAAATACAGAATGGAGTTGGTAGTGGAATCGATTTCATGACACCTACAGGTAAGGGAAAATCAGTTTGTATTTCAAATAAATTTATTTTCAGGAAACATTGAACTCCAGAATATTATCATTGATAACATGGGAGCTTATGGAATTCATATTTCTGAATTCCCATCATCTCCACTACACGCAGTACTTTTGGAAAATGTTAGTGTAACCAATCAAAAAAGAGGACATGCCGGAATTCTGATATCTGGAGGGTGGATTCAAAATGTTGGGCTGCATAATTTGAACTGTTCAAATAATTATGTTCCAAGTTTAATAGTTGCCTTGGAGTGTAATGATGGAAATGAGAAATTGATCAAAATGGATAACAATTCATTTGAAAGGAATTCTGATATAGTTCAACACATTCAGTTGGGAAGTTGTGCAAATCTTCAAGTGAGTTAGAGTTAGAGTTAGAATTCCAAACATTTATTTTCTTATTTTTCAGATGGAAAGAAACAATTACAATGAG</canonical>
            <polymorphic>TAATTGGTGTCACTGGAAATCCGTTTAAAACCTCTAACGGAGTCATCAAGGCGGCTTCGGAACCCTATCTGATCAATGAAGAAGTTGTGATAAACATTGGAGAAACAGTTGTGATTGAACCGGGTACAATTCTAGATTTTGCACCTGGAGTCGGGATTACTGTATCGGGTCGACTGATTATGAATGGGACTGAAGAGAAGCCAATTGTGACTCGTGGTCAGAATGATAACACGTGGCGAGGGATCGTAGCAAAGCCAGAAGGTGTCCTAGATGTGAAAAATGTGGTTTCCGAGGATGCATCAATTGGAATATGGATAGATTCTCAAAAAGTGAAAATAGAAAATGGACGGATTGTTAGACCAGTAGTACATGGAATAGAGATAACACAAAACTCTAATGATGTTGTGGATTTGGGAGGGTTGATAATTGAAGAAGCTAGTGAATCAGCAATCGGAGTGGACGAAAGAAGAGATGATCTACTTATCAAGAACACTAAAATRCAGAATGGAGTTGGTAGTGGAATCGATTTCATGACACCTACAGGTAAGGGAAAATCAGTTTGTATTTCAAATAAATTTATTTTCAGGAAACATTGAACTCCAGAATATTATCATTGATAACATGGGAGCTTATGGAATTCATATTTCTGAATTCCCATCATCTCCACTACACGCAGTACTTTTGGAAAATGTTAGTGTAACCAATCAAAAAAGAGGACATGCCGGAATTCTGATATCTGGAGGGTGGATTCAAAATGTTGGGCTGCATAATTTGAACTGTTCAAATAATTATGTTCCAAGTTTAATAGTTGCCTTGGAGTGTAATGATGGAAATGAGAAATTGATCAAAATGGATAACAATTCATTTGAAAGGAATTCTGATATAGTTCAACACATTCAGTTGGGAAGTTGTGCAAATCTTCAAGTGAGTTAGAGTTAGAGTTAGAATTCCAAACATTTATTTTCTTATTTTTCAGATGGAAAGAAACAATTACAATGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGGATAGATTCTCAAAAAGTGA</pcr_primer_p1>
		<pcr_primer_p2>AACTGATTTTCCCTTACCTGTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGGATAGATTCTCAAAAAGTGAAAATAGAAAATGGACGGATTGTTAGACCAGTAGTACATGGAATAGAGATAACACAAAACTCTAATGATGTTGTGGATTTGGGAGGGTTGATAATTGAAGAAGCTAGTGAATCAGCAATCGGAGTGGACGAAAGAAGAGATGATCTACTTATCAAGAACACTAAAATACAGAATGGAGTTGGTAGTGGAATCGATTTCATGACACCTACAGGTAAGGGAAAATCAGTT</canonical_amplicon>
		<polymorphic_amplicon>ATGGATAGATTCTCAAAAAGTGAAAATAGAAAATGGACGGATTGTTAGACCAGTAGTACATGGAATAGAGATAACACAAAACTCTAATGATGTTGTGGATTTGGGAGGGTTGATAATTGAAGAAGCTAGTGAATCAGCAATCGGAGTGGACGAAAGAAGAGATGATCTACTTATCAAGAACACTAAAATRCAGAATGGAGTTGGTAGTGGAATCGATTTCATGACACCTACAGGTAAGGGAAAATCAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31252</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>265493</contig_pos>
        <strand>+</strand>
        <context>AATTTTTCTC[A/G]AAAACAGGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCTCCTTCTGTTGACGTGTGTTCTCTGTATGTCGCTTATAATTTTTCTC</left_flank>
        <right_flank>AAAACAGGCAATTTTAATCAAAACCAAAACAATAAATAGCTGGTTTGCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGATTCCTTTGATAAACTAATTTTTAAATGTATTATTCTACTTCCTGTTCAACAAATATTTTACTTCCAGGTTGGCGGAATGAGTAAAACCGATTCGAAAACTCGTAGAAAAAAGTATCTAGTGAACTTCTCGCAAAGTGTTCTTCAAGATTGTCTACATGTTTTTGACATGATCAACAGCACCTACACGACTCAACTAAATCCGTCAGCATGGTTTCAATTCTTGTGTCTCACTTTCTCATTCGTTTCAATTCATTTTCTTGATGGGTAAGCGGTGATAAAGTTGAAATTCTAGTTTGATATTTTCCAGATGTGTCATGTTTTACTTCCACAGTGAGCTCCATCCAAGATGGTTATGGAGAAGAGCTGTCAAAAAGAGATCGTTGATTCGGGTGGTGGCAATGTCTAAAGTTTCTACTGTTAGCTAGCATATTGTTGATCTTCTTAACCTCCTTCTGTTGACGTGTGTTCTCTGTATGTCGCTTATAATTTTTCTCAAAAACAGGCAATTTTAATCAAAACCAAAACAATAAATAGCTGGTTTGCTAGTCTCTCAATCTTGATCACATGACAAACTTTTAACTTTCAAGCATTTTAACAAGCACTTCAAAGGAGGTGTAAAGGCAGGCGGTCAATCCAATTACACCAGAGACACCCTCAACACACGTAATAGGCCTATTCTGGATAAATCAGAGAAGGAGAGAGTTGGTCTCCCGGAACAGAATAATATTTCATTTGGCTGTTGTCTCAGATTGACTCACAATTTATGTCAGAGCACGGAAGTTTGGTTTCAGACGAACTTCTCTTCATTCCAGATTCAAAATTTATGTCTGTATTATTTCATGTGGTTGCGGTGGTTTCTATGCTAACGGTGAGTTTTATTAAATTCGGTTCCTGAATATTCTAAAGTCTTAGAATTGTCGAATCTTCTAATTTCGTAGTAATTTCATTTATTTTTCTAAAAAAGAAATTCAAGTTATTCCTGTTCCTAGCAGACA</canonical>
            <polymorphic>CAAGATTCCTTTGATAAACTAATTTTTAAATGTATTATTCTACTTCCTGTTCAACAAATATTTTACTTCCAGGTTGGCGGAATGAGTAAAACCGATTCGAAAACTCGTAGAAAAAAGTATCTAGTGAACTTCTCGCAAAGTGTTCTTCAAGATTGTCTACATGTTTTTGACATGATCAACAGCACCTACACGACTCAACTAAATCCGTCAGCATGGTTTCAATTCTTGTGTCTCACTTTCTCATTCGTTTCAATTCATTTTCTTGATGGGTAAGCGGTGATAAAGTTGAAATTCTAGTTTGATATTTTCCAGATGTGTCATGTTTTACTTCCACAGTGAGCTCCATCCAAGATGGTTATGGAGAAGAGCTGTCAAAAAGAGATCGTTGATTCGGGTGGTGGCAATGTCTAAAGTTTCTACTGTTAGCTAGCATATTGTTGATCTTCTTAACCTCCTTCTGTTGACGTGTGTTCTCTGTATGTCGCTTATAATTTTTCTCRAAAACAGGCAATTTTAATCAAAACCAAAACAATAAATAGCTGGTTTGCTAGTCTCTCAATCTTGATCACATGACAAACTTTTAACTTTCAAGCATTTTAACAAGCACTTCAAAGGAGGTGTAAAGGCAGGCGGTCAATCCAATTACACCAGAGACACCCTCAACACACGTAATAGGCCTATTCTGGATAAATCAGAGAAGGAGAGAGTTGGTCTCCCGGAACAGAATAATATTTCATTTGGCTGTTGTCTCAGATTGACTCACAATTTATGTCAGAGCACGGAAGTTTGGTTTCAGACGAACTTCTCTTCATTCCAGATTCAAAATTTATGTCTGTATTATTTCATGTGGTTGCGGTGGTTTCTATGCTAACGGTGAGTTTTATTAAATTCGGTTCCTGAATATTCTAAAGTCTTAGAATTGTCGAATCTTCTAATTTCGTAGTAATTTCATTTATTTTTCTAAAAAAGAAATTCAAGTTATTCCTGTTCCTAGCAGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCAGATGTGTCATGTTTTACT</pcr_primer_p1>
		<pcr_primer_p2>GAGACTAGCAAACCAGCTATTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCCAGATGTGTCATGTTTTACTTCCACAGTGAGCTCCATCCAAGATGGTTATGGAGAAGAGCTGTCAAAAAGAGATCGTTGATTCGGGTGGTGGCAATGTCTAAAGTTTCTACTGTTAGCTAGCATATTGTTGATCTTCTTAACCTCCTTCTGTTGACGTGTGTTCTCTGTATGTCGCTTATAATTTTTCTCAAAAACAGGCAATTTTAATCAAAACCAAAACAATAAATAGCTGGTTTGCTAGTCTC</canonical_amplicon>
		<polymorphic_amplicon>TTCCAGATGTGTCATGTTTTACTTCCACAGTGAGCTCCATCCAAGATGGTTATGGAGAAGAGCTGTCAAAAAGAGATCGTTGATTCGGGTGGTGGCAATGTCTAAAGTTTCTACTGTTAGCTAGCATATTGTTGATCTTCTTAACCTCCTTCTGTTGACGTGTGTTCTCTGTATGTCGCTTATAATTTTTCTCRAAAACAGGCAATTTTAATCAAAACCAAAACAATAAATAGCTGGTTTGCTAGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31253</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>315926</contig_pos>
        <strand>+</strand>
        <context>TCCGATTACT[C/T]TAGGCTCTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTGGGCAGCAATCAGGCATCCAGAATCCACCGGATGCCCTCCGATTACT</left_flank>
        <right_flank>TAGGCTCTTTATTGAGCCTCCAAAAGTTGACATTCAGAATCGATGCGTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAATGCAGACACAAAACTGTAAGACTTGGAAACTAACTTTTACTACAATATCGGCGTTCGAGCGCATTTAGATGACGTTCCGGAAAAAATGACGTGCGAATTTGCTTCCGAAGAAAATCGAGATAGCAAAAATGAACTTTTTCCAAAACAAAAGTGCAAAACTATTCAAATTACGACTGTTGAATACATTCTCTGTCGAAATGTATGTAATCACTTCCTATTGAAGTCGTTACATTTAAAAGGGGTTCTCCACGTAATAAACCAATCAATGAACCTGCATATCTCACCAAATAAAGCTCTGCTTTGGCCAGAGCCTCTCCCAGACACGATCGCTTTCCAATACCAAATGGAATGACTTGTTGAATCAAATTCTCATTTTTCAAGAATCTTTCTGGCTCGAATTTCTCCGGATCCTCAAACACTTTTTCATTTGTATGAAGAGCGCTCAGTTGGGCAGCAATCAGGCATCCAGAATCCACCGGATGCCCTCCGATTACTGTAGGCTCTTTATTGAGCCTCCAAAAGTTGACATTCAGAATCGATGCGTGTCTCTGGACTTCAGCAAGTGTTGCATTCAAATATGGAGTCTCATTTTTATCTTTCAGTGATAGATGTCGAGATGCTCCGTTGGTCACTTTCATCAATTCGTTTCTTAATTTATCCATCACATCTGGATTGTTAAGGAATCTGATAAAAGCAGAAATCAGCGTCATTGTTGTAGTCTCCTGACCAGTTATCCATAGATCTAACACTAACATCTTCAGGTTTTCTTCACTGAAATCAAATCTGGGGTAAATAAATAAAAGTTCTATTAGTATCCCTCACTTGTAAACTTCACTTTTTGGGTCTTGCTTCATTTTCAGCAAGAACGCATCCACAAAGTCTTCTACGTTGTCAGGATCAATCTCATATGTTCCTTTAATATAATCTCTGGATCTTTTAACTGCGTCTTCTGATACATAGTCTAATAGTTTGAAGTTGTCGGAAATCAATTCATCG</canonical>
            <polymorphic>GGAATGCAGACACAAAACTGTAAGACTTGGAAACTAACTTTTACTACAATATCGGCGTTCGAGCGCATTTAGATGACGTTCCGGAAAAAATGACGTGCGAATTTGCTTCCGAAGAAAATCGAGATAGCAAAAATGAACTTTTTCCAAAACAAAAGTGCAAAACTATTCAAATTACGACTGTTGAATACATTCTCTGTCGAAATGTATGTAATCACTTCCTATTGAAGTCGTTACATTTAAAAGGGGTTCTCCACGTAATAAACCAATCAATGAACCTGCATATCTCACCAAATAAAGCTCTGCTTTGGCCAGAGCCTCTCCCAGACACGATCGCTTTCCAATACCAAATGGAATGACTTGTTGAATCAAATTCTCATTTTTCAAGAATCTTTCTGGCTCGAATTTCTCCGGATCCTCAAACACTTTTTCATTTGTATGAAGAGCGCTCAGTTGGGCAGCAATCAGGCATCCAGAATCCACCGGATGCCCTCCGATTACTYTAGGCTCTTTATTGAGCCTCCAAAAGTTGACATTCAGAATCGATGCGTGTCTCTGGACTTCAGCAAGTGTTGCATTCAAATATGGAGTCTCATTTTTATCTTTCAGTGATAGATGTCGAGATGCTCCGTTGGTCACTTTCATCAATTCGTTTCTTAATTTATCCATCACATCTGGATTGTTAAGGAATCTGATAAAAGCAGAAATCAGCGTCATTGTTGTAGTCTCCTGACCAGTTATCCATAGATCTAACACTAACATCTTCAGGTTTTCTTCACTGAAATCAAATCTGGGGTAAATAAATAAAAGTTCTATTAGTATCCCTCACTTGTAAACTTCACTTTTTGGGTCTTGCTTCATTTTCAGCAAGAACGCATCCACAAAGTCTTCTACGTTGTCAGGATCAATCTCATATGTTCCTTTAATATAATCTCTGGATCTTTTAACTGCGTCTTCTGATACATAGTCTAATAGTTTGAAGTTGTCGGAAATCAATTCATCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 320 160 19</canonical_bands>
                <polymorphic_bands>821 160 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAACACTTTTTCATTTGTATG</pcr_primer_p1>
		<pcr_primer_p2>TGGATAAATTAAGAAACGAATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAAACACTTTTTCATTTGTATGAAGAGCGCTCAGTTGGGCAGCAATCAGGCATCCAGAATCCACCGGATGCCCTCCGATTACTGTAGGCTCTTTATTGAGCCTCCAAAAGTTGACATTCAGAATCGATGCGTGTCTCTGGACTTCAGCAAGTGTTGCATTCAAATATGGAGTCTCATTTTTATCTTTCAGTGATAGATGTCGAGATGCTCCGTTGGTCACTTTCATCAATTCGTTTCTTAATTTATCCA</canonical_amplicon>
		<polymorphic_amplicon>TCAAACACTTTTTCATTTGTATGAAGAGCGCTCAGTTGGGCAGCAATCAGGCATCCAGAATCCACCGGATGCCCTCCGATTACTYTAGGCTCTTTATTGAGCCTCCAAAAGTTGACATTCAGAATCGATGCGTGTCTCTGGACTTCAGCAAGTGTTGCATTCAAATATGGAGTCTCATTTTTATCTTTCAGTGATAGATGTCGAGATGCTCCGTTGGTCACTTTCATCAATTCGTTTCTTAATTTATCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31254</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>316156</contig_pos>
        <strand>+</strand>
        <context>TAGTCTCCTG[A/G]CCAGTTATCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAAGGAATCTGATAAAAGCAGAAATCAGCGTCATTGTTGTAGTCTCCTG</left_flank>
        <right_flank>CCAGTTATCCATAGATCTAACACTAACATCTTCAGGTTTTCTTCACTGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACATTTAAAAGGGGTTCTCCACGTAATAAACCAATCAATGAACCTGCATATCTCACCAAATAAAGCTCTGCTTTGGCCAGAGCCTCTCCCAGACACGATCGCTTTCCAATACCAAATGGAATGACTTGTTGAATCAAATTCTCATTTTTCAAGAATCTTTCTGGCTCGAATTTCTCCGGATCCTCAAACACTTTTTCATTTGTATGAAGAGCGCTCAGTTGGGCAGCAATCAGGCATCCAGAATCCACCGGATGCCCTCCGATTACTGTAGGCTCTTTATTGAGCCTCCAAAAGTTGACATTCAGAATCGATGCGTGTCTCTGGACTTCAGCAAGTGTTGCATTCAAATATGGAGTCTCATTTTTATCTTTCAGTGATAGATGTCGAGATGCTCCGTTGGTCACTTTCATCAATTCGTTTCTTAATTTATCCATCACATCTGGATTGTTAAGGAATCTGATAAAAGCAGAAATCAGCGTCATTGTTGTAGTCTCCTGACCAGTTATCCATAGATCTAACACTAACATCTTCAGGTTTTCTTCACTGAAATCAAATCTGGGGTAAATAAATAAAAGTTCTATTAGTATCCCTCACTTGTAAACTTCACTTTTTGGGTCTTGCTTCATTTTCAGCAAGAACGCATCCACAAAGTCTTCTACGTTGTCAGGATCAATCTCATATGTTCCTTTAATATAATCTCTGGATCTTTTAACTGCGTCTTCTGATACATAGTCTAATAGTTTGAAGTTGTCGGAAATCAATTCATCGAAACTTTTCGAAAATAATGTTTTCAGAATCCACACTGGAAGTACCAAATAAGTGGCTGAAAACTTTTCCATGGATTTGTCTACCATATGCTTGAAAGTCAAAAATCTATTCTTGTTTCTCTGAAAAAATAAGTTGAATGCATATTGCAAAAAATTCCAGCTGTACCTCATCAAACCGAAAACCCATGAGCATGTTGTTGATGATACTTCCAACTGTCAAGTCAAAAAATA</canonical>
            <polymorphic>TTACATTTAAAAGGGGTTCTCCACGTAATAAACCAATCAATGAACCTGCATATCTCACCAAATAAAGCTCTGCTTTGGCCAGAGCCTCTCCCAGACACGATCGCTTTCCAATACCAAATGGAATGACTTGTTGAATCAAATTCTCATTTTTCAAGAATCTTTCTGGCTCGAATTTCTCCGGATCCTCAAACACTTTTTCATTTGTATGAAGAGCGCTCAGTTGGGCAGCAATCAGGCATCCAGAATCCACCGGATGCCCTCCGATTACTGTAGGCTCTTTATTGAGCCTCCAAAAGTTGACATTCAGAATCGATGCGTGTCTCTGGACTTCAGCAAGTGTTGCATTCAAATATGGAGTCTCATTTTTATCTTTCAGTGATAGATGTCGAGATGCTCCGTTGGTCACTTTCATCAATTCGTTTCTTAATTTATCCATCACATCTGGATTGTTAAGGAATCTGATAAAAGCAGAAATCAGCGTCATTGTTGTAGTCTCCTGRCCAGTTATCCATAGATCTAACACTAACATCTTCAGGTTTTCTTCACTGAAATCAAATCTGGGGTAAATAAATAAAAGTTCTATTAGTATCCCTCACTTGTAAACTTCACTTTTTGGGTCTTGCTTCATTTTCAGCAAGAACGCATCCACAAAGTCTTCTACGTTGTCAGGATCAATCTCATATGTTCCTTTAATATAATCTCTGGATCTTTTAACTGCGTCTTCTGATACATAGTCTAATAGTTTGAAGTTGTCGGAAATCAATTCATCGAAACTTTTCGAAAATAATGTTTTCAGAATCCACACTGGAAGTACCAAATAAGTGGCTGAAAACTTTTCCATGGATTTGTCTACCATATGCTTGAAAGTCAAAAATCTATTCTTGTTTCTCTGAAAAAATAAGTTGAATGCATATTGCAAAAAATTCCAGCTGTACCTCATCAAACCGAAAACCCATGAGCATGTTGTTGATGATACTTCCAACTGTCAAGTCAAAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>298 171 152 83 64 62 55 54 35 26</canonical_bands>
                <polymorphic_bands>298 225 152 83 64 62 55 35 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGATTGTTAAGGAATCTGATAA</pcr_primer_p1>
		<pcr_primer_p2>GAACATATGAGATTGATCCTGAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TGGATTGTTAAGGAATCTGATAAAAGCAGAAATCAGCGTCATTGTTGTAGTCTCCTGACCAGTTATCCATAGATCTAACACTAACATCTTCAGGTTTTCTTCACTGAAATCAAATCTGGGGTAAATAAATAAAAGTTCTATTAGTATCCCTCACTTGTAAACTTCACTTTTTGGGTCTTGCTTCATTTTCAGCAAGAACGCATCCACAAAGTCTTCTACGTTGTCAGGATCAATCTCATATGTTC</canonical_amplicon>
		<polymorphic_amplicon>TGGATTGTTAAGGAATCTGATAAAAGCAGAAATCAGCGTCATTGTTGTAGTCTCCTGRCCAGTTATCCATAGATCTAACACTAACATCTTCAGGTTTTCTTCACTGAAATCAAATCTGGGGTAAATAAATAAAAGTTCTATTAGTATCCCTCACTTGTAAACTTCACTTTTTGGGTCTTGCTTCATTTTCAGCAAGAACGCATCCACAAAGTCTTCTACGTTGTCAGGATCAATCTCATATGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31255</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>316459</contig_pos>
        <strand>+</strand>
        <context>TCAGAATCCA[A/C]ACTKGAAGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCGGAAATCAATTCATCGAAACTTTTCGAAAATAATGTTTTCAGAATCCA</left_flank>
        <right_flank>ACTGGAAGTACCAAATAAGTGGCTGAAAACTTTTCCATGGATTTGTCTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGAATCGATGCGTGTCTCTGGACTTCAGCAAGTGTTGCATTCAAATATGGAGTCTCATTTTTATCTTTCAGTGATAGATGTCGAGATGCTCCGTTGGTCACTTTCATCAATTCGTTTCTTAATTTATCCATCACATCTGGATTGTTAAGGAATCTGATAAAAGCAGAAATCAGCGTCATTGTTGTAGTCTCCTGACCAGTTATCCATAGATCTAACACTAACATCTTCAGGTTTTCTTCACTGAAATCAAATCTGGGGTAAATAAATAAAAGTTCTATTAGTATCCCTCACTTGTAAACTTCACTTTTTGGGTCTTGCTTCATTTTCAGCAAGAACGCATCCACAAAGTCTTCTACGTTGTCAGGATCAATCTCATATGTTCCTTTAATATAATCTCTGGATCTTTTAACTGCGTCTTCTGATACATAGTCTAATAGTTTGAAGTTGTCGGAAATCAATTCATCGAAACTTTTCGAAAATAATGTTTTCAGAATCCACACTGGAAGTACCAAATAAGTGGCTGAAAACTTTTCCATGGATTTGTCTACCATATGCTTGAAAGTCAAAAATCTATTCTTGTTTCTCTGAAAAAATAAGTTGAATGCATATTGCAAAAAATTCCAGCTGTACCTCATCAAACCGAAAACCCATGAGCATGTTGTTGATGATACTTCCAACTGTCAAGTCAAAAAATACATTGACAGTTTCCACAGCAGTTCCGTTGACCGACTTGGCATCAAGCTCTGAGCATCTGAGAGGATACATATATGGTTTTTGTTAACTATTTTTCAGAATATAAAGATTACCTTGTATTAAGTTCAGCTATAATTTTCTCCTCCATTAAATCTCTTCCCATTCCCATATTTCTCATTGTCAACATTGAAAACCTTCTCAGTTCTTGCCACTTGTCTCCATTTGAAAAGAAGACTCCGTTTCCTTCTGTAATGGTTTCGAAAGTAAAAAACTTCATTTCGTTTCTTCAACATACGTCGTATAAA</canonical>
            <polymorphic>TCAGAATCGATGCGTGTCTCTGGACTTCAGCAAGTGTTGCATTCAAATATGGAGTCTCATTTTTATCTTTCAGTGATAGATGTCGAGATGCTCCGTTGGTCACTTTCATCAATTCGTTTCTTAATTTATCCATCACATCTGGATTGTTAAGGAATCTGATAAAAGCAGAAATCAGCGTCATTGTTGTAGTCTCCTGACCAGTTATCCATAGATCTAACACTAACATCTTCAGGTTTTCTTCACTGAAATCAAATCTGGGGTAAATAAATAAAAGTTCTATTAGTATCCCTCACTTGTAAACTTCACTTTTTGGGTCTTGCTTCATTTTCAGCAAGAACGCATCCACAAAGTCTTCTACGTTGTCAGGATCAATCTCATATGTTCCTTTAATATAATCTCTGGATCTTTTAACTGCGTCTTCTGATACATAGTCTAATAGTTTGAAGTTGTCGGAAATCAATTCATCGAAACTTTTCGAAAATAATGTTTTCAGAATCCAMACTGGAAGTACCAAATAAGTGGCTGAAAACTTTTCCATGGATTTGTCTACCATATGCTTGAAAGTCAAAAATCTATTCTTGTTTCTCTGAAAAAATAAGTTGAATGCATATTGCAAAAAATTCCAGCTGTACCTCATCAAACCGAAAACCCATGAGCATGTTGTTGATGATACTTCCAACTGTCAAGTCAAAAAATACATTGACAGTTTCCACAGCAGTTCCGTTGACCGACTTGGCATCAAGCTCTGAGCATCTGAGAGGATACATATATGGTTTTTGTTAACTATTTTTCAGAATATAAAGATTACCTTGTATTAAGTTCAGCTATAATTTTCTCCTCCATTAAATCTCTTCCCATTCCCATATTTCTCATTGTCAACATTGAAAACCTTCTCAGTTCTTGCCACTTGTCTCCATTTGAAAAGAAGACTCCGTTTCCTTCTGTAATGGTTTCGAAAGTAAAAAACTTCATTTCGTTTCTTCAACATACGTCGTATAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>194 191 154 94 84 50 40 39 33 27 23 20 20 16 13 2</canonical_bands>
                <polymorphic_bands>194 191 176 94 84 50 40 39 33 27 23 20 16 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCAGGATCAATCTCATATGTTC</pcr_primer_p1>
		<pcr_primer_p2>GCAATATGCATTCAACTTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GTCAGGATCAATCTCATATGTTCCTTTAATATAATCTCTGGATCTTTTAACTGCGTCTTCTGATACATAGTCTAATAGTTTGAAGTTGTCGGAAATCAATTCATCGAAACTTTTCGAAAATAATGTTTTCAGAATCCACACTGGAAGTACCAAATAAGTGGCTGAAAACTTTTCCATGGATTTGTCTACCATATGCTTGAAAGTCAAAAATCTATTCTTGTTTCTCTGAAAAAATAAGTTGAATGCATATTGC</canonical_amplicon>
		<polymorphic_amplicon>GTCAGGATCAATCTCATATGTTCCTTTAATATAATCTCTGGATCTTTTAACTGCGTCTTCTGATACATAGTCTAATAGTTTGAAGTTGTCGGAAATCAATTCATCGAAACTTTTCGAAAATAATGTTTTCAGAATCCAMACTGGAAGTACCAAATAAGTGGCTGAAAACTTTTCCATGGATTTGTCTACCATATGCTTGAAAGTCAAAAATCTATTCTTGTTTCTCTGAAAAAATAAGTTGAATGCATATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31256</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>316463</contig_pos>
        <strand>+</strand>
        <context>AATCCAMACT[G/T]GAAGTACCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATCAATTCATCGAAACTTTTCGAAAATAATGTTTTCAGAATCCACACT</left_flank>
        <right_flank>GAAGTACCAAATAAGTGGCTGAAAACTTTTCCATGGATTTGTCTACCATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCGATGCGTGTCTCTGGACTTCAGCAAGTGTTGCATTCAAATATGGAGTCTCATTTTTATCTTTCAGTGATAGATGTCGAGATGCTCCGTTGGTCACTTTCATCAATTCGTTTCTTAATTTATCCATCACATCTGGATTGTTAAGGAATCTGATAAAAGCAGAAATCAGCGTCATTGTTGTAGTCTCCTGACCAGTTATCCATAGATCTAACACTAACATCTTCAGGTTTTCTTCACTGAAATCAAATCTGGGGTAAATAAATAAAAGTTCTATTAGTATCCCTCACTTGTAAACTTCACTTTTTGGGTCTTGCTTCATTTTCAGCAAGAACGCATCCACAAAGTCTTCTACGTTGTCAGGATCAATCTCATATGTTCCTTTAATATAATCTCTGGATCTTTTAACTGCGTCTTCTGATACATAGTCTAATAGTTTGAAGTTGTCGGAAATCAATTCATCGAAACTTTTCGAAAATAATGTTTTCAGAATCCACACTGGAAGTACCAAATAAGTGGCTGAAAACTTTTCCATGGATTTGTCTACCATATGCTTGAAAGTCAAAAATCTATTCTTGTTTCTCTGAAAAAATAAGTTGAATGCATATTGCAAAAAATTCCAGCTGTACCTCATCAAACCGAAAACCCATGAGCATGTTGTTGATGATACTTCCAACTGTCAAGTCAAAAAATACATTGACAGTTTCCACAGCAGTTCCGTTGACCGACTTGGCATCAAGCTCTGAGCATCTGAGAGGATACATATATGGTTTTTGTTAACTATTTTTCAGAATATAAAGATTACCTTGTATTAAGTTCAGCTATAATTTTCTCCTCCATTAAATCTCTTCCCATTCCCATATTTCTCATTGTCAACATTGAAAACCTTCTCAGTTCTTGCCACTTGTCTCCATTTGAAAAGAAGACTCCGTTTCCTTCTGTAATGGTTTCGAAAGTAAAAAACTTCATTTCGTTTCTTCAACATACGTCGTATAAAATCG</canonical>
            <polymorphic>AATCGATGCGTGTCTCTGGACTTCAGCAAGTGTTGCATTCAAATATGGAGTCTCATTTTTATCTTTCAGTGATAGATGTCGAGATGCTCCGTTGGTCACTTTCATCAATTCGTTTCTTAATTTATCCATCACATCTGGATTGTTAAGGAATCTGATAAAAGCAGAAATCAGCGTCATTGTTGTAGTCTCCTGACCAGTTATCCATAGATCTAACACTAACATCTTCAGGTTTTCTTCACTGAAATCAAATCTGGGGTAAATAAATAAAAGTTCTATTAGTATCCCTCACTTGTAAACTTCACTTTTTGGGTCTTGCTTCATTTTCAGCAAGAACGCATCCACAAAGTCTTCTACGTTGTCAGGATCAATCTCATATGTTCCTTTAATATAATCTCTGGATCTTTTAACTGCGTCTTCTGATACATAGTCTAATAGTTTGAAGTTGTCGGAAATCAATTCATCGAAACTTTTCGAAAATAATGTTTTCAGAATCCACACTKGAAGTACCAAATAAGTGGCTGAAAACTTTTCCATGGATTTGTCTACCATATGCTTGAAAGTCAAAAATCTATTCTTGTTTCTCTGAAAAAATAAGTTGAATGCATATTGCAAAAAATTCCAGCTGTACCTCATCAAACCGAAAACCCATGAGCATGTTGTTGATGATACTTCCAACTGTCAAGTCAAAAAATACATTGACAGTTTCCACAGCAGTTCCGTTGACCGACTTGGCATCAAGCTCTGAGCATCTGAGAGGATACATATATGGTTTTTGTTAACTATTTTTCAGAATATAAAGATTACCTTGTATTAAGTTCAGCTATAATTTTCTCCTCCATTAAATCTCTTCCCATTCCCATATTTCTCATTGTCAACATTGAAAACCTTCTCAGTTCTTGCCACTTGTCTCCATTTGAAAAGAAGACTCCGTTTCCTTCTGTAATGGTTTCGAAAGTAAAAAACTTCATTTCGTTTCTTCAACATACGTCGTATAAAATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAGGATCAATCTCATATGTTC</pcr_primer_p1>
		<pcr_primer_p2>GCAATATGCATTCAACTTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GTCAGGATCAATCTCATATGTTCCTTTAATATAATCTCTGGATCTTTTAACTGCGTCTTCTGATACATAGTCTAATAGTTTGAAGTTGTCGGAAATCAATTCATCGAAACTTTTCGAAAATAATGTTTTCAGAATCCACACTGGAAGTACCAAATAAGTGGCTGAAAACTTTTCCATGGATTTGTCTACCATATGCTTGAAAGTCAAAAATCTATTCTTGTTTCTCTGAAAAAATAAGTTGAATGCATATTGC</canonical_amplicon>
		<polymorphic_amplicon>GTCAGGATCAATCTCATATGTTCCTTTAATATAATCTCTGGATCTTTTAACTGCGTCTTCTGATACATAGTCTAATAGTTTGAAGTTGTCGGAAATCAATTCATCGAAACTTTTCGAAAATAATGTTTTCAGAATCCACACTKGAAGTACCAAATAAGTGGCTGAAAACTTTTCCATGGATTTGTCTACCATATGCTTGAAAGTCAAAAATCTATTCTTGTTTCTCTGAAAAAATAAGTTGAATGCATATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31257</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>363547</contig_pos>
        <strand>+</strand>
        <context>AAGTTAATTC[A/G]AAAATAAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAATAAAGTACCTATCCTGGTATCCAAGATGAACTTTTAAGTTAATTC</left_flank>
        <right_flank>AAAATAAAACTGATCGCAGAAGGCTCCCGGTGAAGAACCTGAGAACCAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTAATCAGATTAATCATCGTTTATCATTAGAGCAGGATCTTCTTTGCATCCGTTCAAGTAGAAGTCAATGGTGTCGAGTGCAAATGCTCCTTTCATTGCAATGTTGAACTGGAAATATTATCAATTACATTATAGAACTTTTGAATGGGTCAAAAACCTTCAAATACTCGAGAGTAAACTCCTTGTTGAATCTCATCGATGATGTGTTTGTAGTTCCACTCCGGATGAGTCCTCGCTCGAATTGATCGGCAACGCGCTTGCAATTAGTGTATTGAGCCACTCGGAACGTCTTGTGCCACGTGTCAGCTGAAGTATGGGTCAATAGGAAAGAGGGAATATAGATTTTTGAAATAGTTGGGATACAAATTTAGGTTCGGGTAATCTCAGGTGTGTTTCATTTTTCATTTATAAAATTGAATACCAAGCAACTAAAAGAACCCGGCAACGAAAAATAAAGTACCTATCCTGGTATCCAAGATGAACTTTTAAGTTAATTCAAAAATAAAACTGATCGCAGAAGGCTCCCGGTGAAGAACCTGAGAACCAAGAGAGACTTTTATACTCTGTTTTGTAGCTAATTCATTTTTTGACTCGACTCACGTGTATACAATTTGGATGCGTGGTAGAGATGATCAAGGAAATGGACAGTCTCTTCGTACTCCAGAACCTTCAATTCCATTCGATTTGGCTTGGTCGGCGTTGGCTTCCATTTTTCAAAAAATTTACAAGAGTCTTGGAGAAACTGAAATTTTCCGAATAAATATTGAGAGTATCTAAAAATCGAACACCTCTTTGTTGACATGGATCAGATCACCACCCTTGCATTGCAACTCTGCGTTCGTTATACCACTGGGTCCGTGACTTTGCAAAACGGATGCGAAATTGAAACCGGGAATTTGTATGCACTCAACTTTCAATGTGAAAGCGTATGGTCCAGCCGGTCCCATCTCTTTCAACACATCACTCCAATAATAGCACGTTGGAAAGCAAATTGTTCG</canonical>
            <polymorphic>TTTTAATCAGATTAATCATCGTTTATCATTAGAGCAGGATCTTCTTTGCATCCGTTCAAGTAGAAGTCAATGGTGTCGAGTGCAAATGCTCCTTTCATTGCAATGTTGAACTGGAAATATTATCAATTACATTATAGAACTTTTGAATGGGTCAAAAACCTTCAAATACTCGAGAGTAAACTCCTTGTTGAATCTCATCGATGATGTGTTTGTAGTTCCACTCCGGATGAGTCCTCGCTCGAATTGATCGGCAACGCGCTTGCAATTAGTGTATTGAGCCACTCGGAACGTCTTGTGCCACGTGTCAGCTGAAGTATGGGTCAATAGGAAAGAGGGAATATAGATTTTTGAAATAGTTGGGATACAAATTTAGGTTCGGGTAATCTCAGGTGTGTTTCATTTTTCATTTATAAAATTGAATACCAAGCAACTAAAAGAACCCGGCAACGAAAAATAAAGTACCTATCCTGGTATCCAAGATGAACTTTTAAGTTAATTCRAAAATAAAACTGATCGCAGAAGGCTCCCGGTGAAGAACCTGAGAACCAAGAGAGACTTTTATACTCTGTTTTGTAGCTAATTCATTTTTTGACTCGACTCACGTGTATACAATTTGGATGCGTGGTAGAGATGATCAAGGAAATGGACAGTCTCTTCGTACTCCAGAACCTTCAATTCCATTCGATTTGGCTTGGTCGGCGTTGGCTTCCATTTTTCAAAAAATTTACAAGAGTCTTGGAGAAACTGAAATTTTCCGAATAAATATTGAGAGTATCTAAAAATCGAACACCTCTTTGTTGACATGGATCAGATCACCACCCTTGCATTGCAACTCTGCGTTCGTTATACCACTGGGTCCGTGACTTTGCAAAACGGATGCGAAATTGAAACCGGGAATTTGTATGCACTCAACTTTCAATGTGAAAGCGTATGGTCCAGCCGGTCCCATCTCTTTCAACACATCACTCCAATAATAGCACGTTGGAAAGCAAATTGTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTATGGGTCAATAGGAAAGAG</pcr_primer_p1>
		<pcr_primer_p2>TAAAAGTCTCTCTTGGTTCTCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGTATGGGTCAATAGGAAAGAGGGAATATAGATTTTTGAAATAGTTGGGATACAAATTTAGGTTCGGGTAATCTCAGGTGTGTTTCATTTTTCATTTATAAAATTGAATACCAAGCAACTAAAAGAACCCGGCAACGAAAAATAAAGTACCTATCCTGGTATCCAAGATGAACTTTTAAGTTAATTCAAAAATAAAACTGATCGCAGAAGGCTCCCGGTGAAGAACCTGAGAACCAAGAGAGACTTTTA</canonical_amplicon>
		<polymorphic_amplicon>AAGTATGGGTCAATAGGAAAGAGGGAATATAGATTTTTGAAATAGTTGGGATACAAATTTAGGTTCGGGTAATCTCAGGTGTGTTTCATTTTTCATTTATAAAATTGAATACCAAGCAACTAAAAGAACCCGGCAACGAAAAATAAAGTACCTATCCTGGTATCCAAGATGAACTTTTAAGTTAATTCRAAAATAAAACTGATCGCAGAAGGCTCCCGGTGAAGAACCTGAGAACCAAGAGAGACTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31258</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>368862</contig_pos>
        <strand>+</strand>
        <context>ATTCATAAAC[A/T]CTGTCGAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGAGTGAAAGAAACTCATGTTCCTGAAAATACGGTTTCTATTCATAAAC</left_flank>
        <right_flank>CTGTCGAATCAAAAATCCACCACTGCATATTATGATCCATGAATATTTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGGCGGGTCATTGCCAGGTCAGATTTCGGAGTTTGTTTAGTAGTTGTCTTATCCGAACCAACATCCAACCAGAAGTTGCCTGTGAAGCCCAAGAAACTTCAAAATCTCACCGTTTTGTTCACAGCTATTCTCTTGTCTTGTAACTTCAGAACAACATCATTTGGTTCTGGCATTTTCACATCATTCAGATAATCTTCATCGTTCCATCCATCGACTTCTTGAAATTCAAAATTCACATGAAAAATGTTTCCTTCTGAATTCACGTCTTCTTTTTTGCAAAACATTGGAAAACAGATCGTATTTTGTGTCTTATTCAAACGTCTTCTGAACTTCCTTGTAATTTTTCCTTGCTTAGAATCCAATGAAACTTCCAATGAACACACACAACTTCTCTTGATGTCTCCAACTAGAACTCCACCAATCGAGAGAAACGTTTGATTTCTGAACGTCGAGTGAAAGAAACTCATGTTCCTGAAAATACGGTTTCTATTCATAAACACTGTCGAATCAAAAATCCACCACTGCATATTATGATCCATGAATATTTTAAAGATACTTGGAAGGTCTCCAGATTTCGGGATTCTTCTCACATTCCATTCTGCATGATACAAAATGCAGAGCGATTCACAACACTGCTTCGGAGGCCTTGGAATCTTTATAATATCCGCGATGTGCTTGCAGAACAGATTTTCTCAAAGCCTCCTCCGATTCCGATGCCATCCATGAATTGAAAAAATTTCAAGTTGTATGCAAACTCATTCAATTCATATAGCTTTTTATCTAAAATATAGTGCTCGATGAATGTCGAATGACCGTGAAATCTGTAATAGAATGCCCCACACACTGCCAAGTTTGAGCTTGATTATCTCGATTTCTATAGAAGATATGAAAAATGTGTCAACTGATAAGATGTTTTTGATAGTATGATAAACAATTAATCAGTTTACAACTTTTTTATATCTTTGACAGGTACCGTGAAAAATCGGCTCAAAGTAAAAA</canonical>
            <polymorphic>GCGGCGGGTCATTGCCAGGTCAGATTTCGGAGTTTGTTTAGTAGTTGTCTTATCCGAACCAACATCCAACCAGAAGTTGCCTGTGAAGCCCAAGAAACTTCAAAATCTCACCGTTTTGTTCACAGCTATTCTCTTGTCTTGTAACTTCAGAACAACATCATTTGGTTCTGGCATTTTCACATCATTCAGATAATCTTCATCGTTCCATCCATCGACTTCTTGAAATTCAAAATTCACATGAAAAATGTTTCCTTCTGAATTCACGTCTTCTTTTTTGCAAAACATTGGAAAACAGATCGTATTTTGTGTCTTATTCAAACGTCTTCTGAACTTCCTTGTAATTTTTCCTTGCTTAGAATCCAATGAAACTTCCAATGAACACACACAACTTCTCTTGATGTCTCCAACTAGAACTCCACCAATCGAGAGAAACGTTTGATTTCTGAACGTCGAGTGAAAGAAACTCATGTTCCTGAAAATACGGTTTCTATTCATAAACWCTGTCGAATCAAAAATCCACCACTGCATATTATGATCCATGAATATTTTAAAGATACTTGGAAGGTCTCCAGATTTCGGGATTCTTCTCACATTCCATTCTGCATGATACAAAATGCAGAGCGATTCACAACACTGCTTCGGAGGCCTTGGAATCTTTATAATATCCGCGATGTGCTTGCAGAACAGATTTTCTCAAAGCCTCCTCCGATTCCGATGCCATCCATGAATTGAAAAAATTTCAAGTTGTATGCAAACTCATTCAATTCATATAGCTTTTTATCTAAAATATAGTGCTCGATGAATGTCGAATGACCGTGAAATCTGTAATAGAATGCCCCACACACTGCCAAGTTTGAGCTTGATTATCTCGATTTCTATAGAAGATATGAAAAATGTGTCAACTGATAAGATGTTTTTGATAGTATGATAAACAATTAATCAGTTTACAACTTTTTTATATCTTTGACAGGTACCGTGAAAAATCGGCTCAAAGTAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>371 313 160 112 25 19</canonical_bands>
                <polymorphic_bands>371 332 160 112 25</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>119 85 80 73 68 57 57 54 45 44 42 38 38 33 27 25 24 22 22 19 12 5 3 2 2 2 2</canonical_bands>
                <polymorphic_bands>119 85 80 73 68 63 57 57 54 45 42 38 38 33 27 25 24 22 22 12 5 3 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAAACGTTTGATTTCTGAAC</pcr_primer_p1>
		<pcr_primer_p2>ACATCGCGGATATTATAAAGATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAGAAACGTTTGATTTCTGAACGTCGAGTGAAAGAAACTCATGTTCCTGAAAATACGGTTTCTATTCATAAACACTGTCGAATCAAAAATCCACCACTGCATATTATGATCCATGAATATTTTAAAGATACTTGGAAGGTCTCCAGATTTCGGGATTCTTCTCACATTCCATTCTGCATGATACAAAATGCAGAGCGATTCACAACACTGCTTCGGAGGCCTTGGAATCTTTATAATATCCGCGATGT</canonical_amplicon>
		<polymorphic_amplicon>GAGAAACGTTTGATTTCTGAACGTCGAGTGAAAGAAACTCATGTTCCTGAAAATACGGTTTCTATTCATAAACWCTGTCGAATCAAAAATCCACCACTGCATATTATGATCCATGAATATTTTAAAGATACTTGGAAGGTCTCCAGATTTCGGGATTCTTCTCACATTCCATTCTGCATGATACAAAATGCAGAGCGATTCACAACACTGCTTCGGAGGCCTTGGAATCTTTATAATATCCGCGATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31259</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>368894</contig_pos>
        <strand>+</strand>
        <context>ACTGCATATT[A/T]TGATCCATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGGTTTCTATTCATAAACACTGTCGAATCAAAAATCCACCACTGCATATT</left_flank>
        <right_flank>TGATCCATGAATATTTTAAAGATACTTGGAAGGTCTCCAGATTTCGGGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGTTTAGTAGTTGTCTTATCCGAACCAACATCCAACCAGAAGTTGCCTGTGAAGCCCAAGAAACTTCAAAATCTCACCGTTTTGTTCACAGCTATTCTCTTGTCTTGTAACTTCAGAACAACATCATTTGGTTCTGGCATTTTCACATCATTCAGATAATCTTCATCGTTCCATCCATCGACTTCTTGAAATTCAAAATTCACATGAAAAATGTTTCCTTCTGAATTCACGTCTTCTTTTTTGCAAAACATTGGAAAACAGATCGTATTTTGTGTCTTATTCAAACGTCTTCTGAACTTCCTTGTAATTTTTCCTTGCTTAGAATCCAATGAAACTTCCAATGAACACACACAACTTCTCTTGATGTCTCCAACTAGAACTCCACCAATCGAGAGAAACGTTTGATTTCTGAACGTCGAGTGAAAGAAACTCATGTTCCTGAAAATACGGTTTCTATTCATAAACACTGTCGAATCAAAAATCCACCACTGCATATTATGATCCATGAATATTTTAAAGATACTTGGAAGGTCTCCAGATTTCGGGATTCTTCTCACATTCCATTCTGCATGATACAAAATGCAGAGCGATTCACAACACTGCTTCGGAGGCCTTGGAATCTTTATAATATCCGCGATGTGCTTGCAGAACAGATTTTCTCAAAGCCTCCTCCGATTCCGATGCCATCCATGAATTGAAAAAATTTCAAGTTGTATGCAAACTCATTCAATTCATATAGCTTTTTATCTAAAATATAGTGCTCGATGAATGTCGAATGACCGTGAAATCTGTAATAGAATGCCCCACACACTGCCAAGTTTGAGCTTGATTATCTCGATTTCTATAGAAGATATGAAAAATGTGTCAACTGATAAGATGTTTTTGATAGTATGATAAACAATTAATCAGTTTACAACTTTTTTATATCTTTGACAGGTACCGTGAAAAATCGGCTCAAAGTAAAAAGTTAGGGGGCCCTTCTATTAAAGATACTACCG</canonical>
            <polymorphic>TTTGTTTAGTAGTTGTCTTATCCGAACCAACATCCAACCAGAAGTTGCCTGTGAAGCCCAAGAAACTTCAAAATCTCACCGTTTTGTTCACAGCTATTCTCTTGTCTTGTAACTTCAGAACAACATCATTTGGTTCTGGCATTTTCACATCATTCAGATAATCTTCATCGTTCCATCCATCGACTTCTTGAAATTCAAAATTCACATGAAAAATGTTTCCTTCTGAATTCACGTCTTCTTTTTTGCAAAACATTGGAAAACAGATCGTATTTTGTGTCTTATTCAAACGTCTTCTGAACTTCCTTGTAATTTTTCCTTGCTTAGAATCCAATGAAACTTCCAATGAACACACACAACTTCTCTTGATGTCTCCAACTAGAACTCCACCAATCGAGAGAAACGTTTGATTTCTGAACGTCGAGTGAAAGAAACTCATGTTCCTGAAAATACGGTTTCTATTCATAAACACTGTCGAATCAAAAATCCACCACTGCATATTWTGATCCATGAATATTTTAAAGATACTTGGAAGGTCTCCAGATTTCGGGATTCTTCTCACATTCCATTCTGCATGATACAAAATGCAGAGCGATTCACAACACTGCTTCGGAGGCCTTGGAATCTTTATAATATCCGCGATGTGCTTGCAGAACAGATTTTCTCAAAGCCTCCTCCGATTCCGATGCCATCCATGAATTGAAAAAATTTCAAGTTGTATGCAAACTCATTCAATTCATATAGCTTTTTATCTAAAATATAGTGCTCGATGAATGTCGAATGACCGTGAAATCTGTAATAGAATGCCCCACACACTGCCAAGTTTGAGCTTGATTATCTCGATTTCTATAGAAGATATGAAAAATGTGTCAACTGATAAGATGTTTTTGATAGTATGATAAACAATTAATCAGTTTACAACTTTTTTATATCTTTGACAGGTACCGTGAAAAATCGGCTCAAAGTAAAAAGTTAGGGGGCCCTTCTATTAAAGATACTACCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAACGTTTGATTTCTGAAC</pcr_primer_p1>
		<pcr_primer_p2>ACATCGCGGATATTATAAAGATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAGAAACGTTTGATTTCTGAACGTCGAGTGAAAGAAACTCATGTTCCTGAAAATACGGTTTCTATTCATAAACACTGTCGAATCAAAAATCCACCACTGCATATTATGATCCATGAATATTTTAAAGATACTTGGAAGGTCTCCAGATTTCGGGATTCTTCTCACATTCCATTCTGCATGATACAAAATGCAGAGCGATTCACAACACTGCTTCGGAGGCCTTGGAATCTTTATAATATCCGCGATGT</canonical_amplicon>
		<polymorphic_amplicon>GAGAAACGTTTGATTTCTGAACGTCGAGTGAAAGAAACTCATGTTCCTGAAAATACGGTTTCTATTCATAAACACTGTCGAATCAAAAATCCACCACTGCATATTWTGATCCATGAATATTTTAAAGATACTTGGAAGGTCTCCAGATTTCGGGATTCTTCTCACATTCCATTCTGCATGATACAAAATGCAGAGCGATTCACAACACTGCTTCGGAGGCCTTGGAATCTTTATAATATCCGCGATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31260</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>368939</contig_pos>
        <strand>+</strand>
        <context>CTCCAGATTT[C/T]GGGATTCTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATATTATGATCCATGAATATTTTAAAGATACTTGGAAGGTCTCCAGATTT</left_flank>
        <right_flank>GGGATTCTTCTCACATTCCATTCTGCATGATACAAAATGCAGAGCGATTC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCCTGTGAAGCCCAAGAAACTTCAAAATCTCACCGTTTTGTTCACAGCTATTCTCTTGTCTTGTAACTTCAGAACAACATCATTTGGTTCTGGCATTTTCACATCATTCAGATAATCTTCATCGTTCCATCCATCGACTTCTTGAAATTCAAAATTCACATGAAAAATGTTTCCTTCTGAATTCACGTCTTCTTTTTTGCAAAACATTGGAAAACAGATCGTATTTTGTGTCTTATTCAAACGTCTTCTGAACTTCCTTGTAATTTTTCCTTGCTTAGAATCCAATGAAACTTCCAATGAACACACACAACTTCTCTTGATGTCTCCAACTAGAACTCCACCAATCGAGAGAAACGTTTGATTTCTGAACGTCGAGTGAAAGAAACTCATGTTCCTGAAAATACGGTTTCTATTCATAAACACTGTCGAATCAAAAATCCACCACTGCATATTATGATCCATGAATATTTTAAAGATACTTGGAAGGTCTCCAGATTTCGGGATTCTTCTCACATTCCATTCTGCATGATACAAAATGCAGAGCGATTCACAACACTGCTTCGGAGGCCTTGGAATCTTTATAATATCCGCGATGTGCTTGCAGAACAGATTTTCTCAAAGCCTCCTCCGATTCCGATGCCATCCATGAATTGAAAAAATTTCAAGTTGTATGCAAACTCATTCAATTCATATAGCTTTTTATCTAAAATATAGTGCTCGATGAATGTCGAATGACCGTGAAATCTGTAATAGAATGCCCCACACACTGCCAAGTTTGAGCTTGATTATCTCGATTTCTATAGAAGATATGAAAAATGTGTCAACTGATAAGATGTTTTTGATAGTATGATAAACAATTAATCAGTTTACAACTTTTTTATATCTTTGACAGGTACCGTGAAAAATCGGCTCAAAGTAAAAAGTTAGGGGGCCCTTCTATTAAAGATACTACCGAAAAAAAAGCAAACTCACCATCGAACCTCCACTTATGATAGCAGG</canonical>
            <polymorphic>TGCCTGTGAAGCCCAAGAAACTTCAAAATCTCACCGTTTTGTTCACAGCTATTCTCTTGTCTTGTAACTTCAGAACAACATCATTTGGTTCTGGCATTTTCACATCATTCAGATAATCTTCATCGTTCCATCCATCGACTTCTTGAAATTCAAAATTCACATGAAAAATGTTTCCTTCTGAATTCACGTCTTCTTTTTTGCAAAACATTGGAAAACAGATCGTATTTTGTGTCTTATTCAAACGTCTTCTGAACTTCCTTGTAATTTTTCCTTGCTTAGAATCCAATGAAACTTCCAATGAACACACACAACTTCTCTTGATGTCTCCAACTAGAACTCCACCAATCGAGAGAAACGTTTGATTTCTGAACGTCGAGTGAAAGAAACTCATGTTCCTGAAAATACGGTTTCTATTCATAAACACTGTCGAATCAAAAATCCACCACTGCATATTATGATCCATGAATATTTTAAAGATACTTGGAAGGTCTCCAGATTTYGGGATTCTTCTCACATTCCATTCTGCATGATACAAAATGCAGAGCGATTCACAACACTGCTTCGGAGGCCTTGGAATCTTTATAATATCCGCGATGTGCTTGCAGAACAGATTTTCTCAAAGCCTCCTCCGATTCCGATGCCATCCATGAATTGAAAAAATTTCAAGTTGTATGCAAACTCATTCAATTCATATAGCTTTTTATCTAAAATATAGTGCTCGATGAATGTCGAATGACCGTGAAATCTGTAATAGAATGCCCCACACACTGCCAAGTTTGAGCTTGATTATCTCGATTTCTATAGAAGATATGAAAAATGTGTCAACTGATAAGATGTTTTTGATAGTATGATAAACAATTAATCAGTTTACAACTTTTTTATATCTTTGACAGGTACCGTGAAAAATCGGCTCAAAGTAAAAAGTTAGGGGGCCCTTCTATTAAAGATACTACCGAAAAAAAAGCAAACTCACCATCGAACCTCCACTTATGATAGCAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>291 209 175 142 97 48 30 8</canonical_bands>
                <polymorphic_bands>299 209 175 142 97 48 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAAACGTTTGATTTCTGAAC</pcr_primer_p1>
		<pcr_primer_p2>ACATCGCGGATATTATAAAGATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAGAAACGTTTGATTTCTGAACGTCGAGTGAAAGAAACTCATGTTCCTGAAAATACGGTTTCTATTCATAAACACTGTCGAATCAAAAATCCACCACTGCATATTATGATCCATGAATATTTTAAAGATACTTGGAAGGTCTCCAGATTTCGGGATTCTTCTCACATTCCATTCTGCATGATACAAAATGCAGAGCGATTCACAACACTGCTTCGGAGGCCTTGGAATCTTTATAATATCCGCGATGT</canonical_amplicon>
		<polymorphic_amplicon>GAGAAACGTTTGATTTCTGAACGTCGAGTGAAAGAAACTCATGTTCCTGAAAATACGGTTTCTATTCATAAACACTGTCGAATCAAAAATCCACCACTGCATATTATGATCCATGAATATTTTAAAGATACTTGGAAGGTCTCCAGATTTYGGGATTCTTCTCACATTCCATTCTGCATGATACAAAATGCAGAGCGATTCACAACACTGCTTCGGAGGCCTTGGAATCTTTATAATATCCGCGATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31261</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>368976</contig_pos>
        <strand>+</strand>
        <context>ATGATACAAA[A/G]TGCAGAGCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTCTCCAGATTTCGGGATTCTTCTCACATTCCATTCTGCATGATACAAA</left_flank>
        <right_flank>TGCAGAGCGATTCACAACACTGCTTCGGAGGCCTTGGAATCTTTATAATA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGTTCACAGCTATTCTCTTGTCTTGTAACTTCAGAACAACATCATTTGGTTCTGGCATTTTCACATCATTCAGATAATCTTCATCGTTCCATCCATCGACTTCTTGAAATTCAAAATTCACATGAAAAATGTTTCCTTCTGAATTCACGTCTTCTTTTTTGCAAAACATTGGAAAACAGATCGTATTTTGTGTCTTATTCAAACGTCTTCTGAACTTCCTTGTAATTTTTCCTTGCTTAGAATCCAATGAAACTTCCAATGAACACACACAACTTCTCTTGATGTCTCCAACTAGAACTCCACCAATCGAGAGAAACGTTTGATTTCTGAACGTCGAGTGAAAGAAACTCATGTTCCTGAAAATACGGTTTCTATTCATAAACACTGTCGAATCAAAAATCCACCACTGCATATTATGATCCATGAATATTTTAAAGATACTTGGAAGGTCTCCAGATTTCGGGATTCTTCTCACATTCCATTCTGCATGATACAAAATGCAGAGCGATTCACAACACTGCTTCGGAGGCCTTGGAATCTTTATAATATCCGCGATGTGCTTGCAGAACAGATTTTCTCAAAGCCTCCTCCGATTCCGATGCCATCCATGAATTGAAAAAATTTCAAGTTGTATGCAAACTCATTCAATTCATATAGCTTTTTATCTAAAATATAGTGCTCGATGAATGTCGAATGACCGTGAAATCTGTAATAGAATGCCCCACACACTGCCAAGTTTGAGCTTGATTATCTCGATTTCTATAGAAGATATGAAAAATGTGTCAACTGATAAGATGTTTTTGATAGTATGATAAACAATTAATCAGTTTACAACTTTTTTATATCTTTGACAGGTACCGTGAAAAATCGGCTCAAAGTAAAAAGTTAGGGGGCCCTTCTATTAAAGATACTACCGAAAAAAAAGCAAACTCACCATCGAACCTCCACTTATGATAGCAGGCTCCAAGCATGTCAAAACAAGTTTGTTTATTATATTC</canonical>
            <polymorphic>TTTGTTCACAGCTATTCTCTTGTCTTGTAACTTCAGAACAACATCATTTGGTTCTGGCATTTTCACATCATTCAGATAATCTTCATCGTTCCATCCATCGACTTCTTGAAATTCAAAATTCACATGAAAAATGTTTCCTTCTGAATTCACGTCTTCTTTTTTGCAAAACATTGGAAAACAGATCGTATTTTGTGTCTTATTCAAACGTCTTCTGAACTTCCTTGTAATTTTTCCTTGCTTAGAATCCAATGAAACTTCCAATGAACACACACAACTTCTCTTGATGTCTCCAACTAGAACTCCACCAATCGAGAGAAACGTTTGATTTCTGAACGTCGAGTGAAAGAAACTCATGTTCCTGAAAATACGGTTTCTATTCATAAACACTGTCGAATCAAAAATCCACCACTGCATATTATGATCCATGAATATTTTAAAGATACTTGGAAGGTCTCCAGATTTCGGGATTCTTCTCACATTCCATTCTGCATGATACAAARTGCAGAGCGATTCACAACACTGCTTCGGAGGCCTTGGAATCTTTATAATATCCGCGATGTGCTTGCAGAACAGATTTTCTCAAAGCCTCCTCCGATTCCGATGCCATCCATGAATTGAAAAAATTTCAAGTTGTATGCAAACTCATTCAATTCATATAGCTTTTTATCTAAAATATAGTGCTCGATGAATGTCGAATGACCGTGAAATCTGTAATAGAATGCCCCACACACTGCCAAGTTTGAGCTTGATTATCTCGATTTCTATAGAAGATATGAAAAATGTGTCAACTGATAAGATGTTTTTGATAGTATGATAAACAATTAATCAGTTTACAACTTTTTTATATCTTTGACAGGTACCGTGAAAAATCGGCTCAAAGTAAAAAGTTAGGGGGCCCTTCTATTAAAGATACTACCGAAAAAAAAGCAAACTCACCATCGAACCTCCACTTATGATAGCAGGCTCCAAGCATGTCAAAACAAGTTTGTTTATTATATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAACGTTTGATTTCTGAAC</pcr_primer_p1>
		<pcr_primer_p2>ACATCGCGGATATTATAAAGATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAGAAACGTTTGATTTCTGAACGTCGAGTGAAAGAAACTCATGTTCCTGAAAATACGGTTTCTATTCATAAACACTGTCGAATCAAAAATCCACCACTGCATATTATGATCCATGAATATTTTAAAGATACTTGGAAGGTCTCCAGATTTCGGGATTCTTCTCACATTCCATTCTGCATGATACAAAATGCAGAGCGATTCACAACACTGCTTCGGAGGCCTTGGAATCTTTATAATATCCGCGATGT</canonical_amplicon>
		<polymorphic_amplicon>GAGAAACGTTTGATTTCTGAACGTCGAGTGAAAGAAACTCATGTTCCTGAAAATACGGTTTCTATTCATAAACACTGTCGAATCAAAAATCCACCACTGCATATTATGATCCATGAATATTTTAAAGATACTTGGAAGGTCTCCAGATTTCGGGATTCTTCTCACATTCCATTCTGCATGATACAAARTGCAGAGCGATTCACAACACTGCTTCGGAGGCCTTGGAATCTTTATAATATCCGCGATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31262</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>369059</contig_pos>
        <strand></strand>
        <context>GATTTTCTCA[A/G]RGCCTCCTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTGGAATCTTTATAATATCCGCGATGTGCTTGCAGAACAGATTTTCTCA</left_flank>
        <right_flank>AGCCTCCTCCGATTCCGATGCCATCCATGAATTGAAAAAATTTCAAGTTG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCGTTCCATCCATCGACTTCTTGAAATTCAAAATTCACATGAAAAATGTTTCCTTCTGAATTCACGTCTTCTTTTTTGCAAAACATTGGAAAACAGATCGTATTTTGTGTCTTATTCAAACGTCTTCTGAACTTCCTTGTAATTTTTCCTTGCTTAGAATCCAATGAAACTTCCAATGAACACACACAACTTCTCTTGATGTCTCCAACTAGAACTCCACCAATCGAGAGAAACGTTTGATTTCTGAACGTCGAGTGAAAGAAACTCATGTTCCTGAAAATACGGTTTCTATTCATAAACACTGTCGAATCAAAAATCCACCACTGCATATTATGATCCATGAATATTTTAAAGATACTTGGAAGGTCTCCAGATTTCGGGATTCTTCTCACATTCCATTCTGCATGATACAAAATGCAGAGCGATTCACAACACTGCTTCGGAGGCCTTGGAATCTTTATAATATCCGCGATGTGCTTGCAGAACAGATTTTCTCAAAGCCTCCTCCGATTCCGATGCCATCCATGAATTGAAAAAATTTCAAGTTGTATGCAAACTCATTCAATTCATATAGCTTTTTATCTAAAATATAGTGCTCGATGAATGTCGAATGACCGTGAAATCTGTAATAGAATGCCCCACACACTGCCAAGTTTGAGCTTGATTATCTCGATTTCTATAGAAGATATGAAAAATGTGTCAACTGATAAGATGTTTTTGATAGTATGATAAACAATTAATCAGTTTACAACTTTTTTATATCTTTGACAGGTACCGTGAAAAATCGGCTCAAAGTAAAAAGTTAGGGGGCCCTTCTATTAAAGATACTACCGAAAAAAAAGCAAACTCACCATCGAACCTCCACTTATGATAGCAGGCTCCAAGCATGTCAAAACAAGTTTGTTTATTATATTCAGTAGATTCTCCCCATAAATACTCGATCGCAGTGTGGCTCATGTCCGGCCAATTTGGCTCGACAAACTGAAATTTTACCAATG</canonical>
            <polymorphic>CATCGTTCCATCCATCGACTTCTTGAAATTCAAAATTCACATGAAAAATGTTTCCTTCTGAATTCACGTCTTCTTTTTTGCAAAACATTGGAAAACAGATCGTATTTTGTGTCTTATTCAAACGTCTTCTGAACTTCCTTGTAATTTTTCCTTGCTTAGAATCCAATGAAACTTCCAATGAACACACACAACTTCTCTTGATGTCTCCAACTAGAACTCCACCAATCGAGAGAAACGTTTGATTTCTGAACGTCGAGTGAAAGAAACTCATGTTCCTGAAAATACGGTTTCTATTCATAAACACTGTCGAATCAAAAATCCACCACTGCATATTATGATCCATGAATATTTTAAAGATACTTGGAAGGTCTCCAGATTTCGGGATTCTTCTCACATTCCATTCTGCATGATACAAAATGCAGAGCGATTCACAACACTGCTTCGGAGGCCTTGGAATCTTTATAATATCCGCGATGTGCTTGCAGAACAGATTTTCTCARAGCCTCCTCCGATTCCGATGCCATCCATGAATTGAAAAAATTTCAAGTTGTATGCAAACTCATTCAATTCATATAGCTTTTTATCTAAAATATAGTGCTCGATGAATGTCGAATGACCGTGAAATCTGTAATAGAATGCCCCACACACTGCCAAGTTTGAGCTTGATTATCTCGATTTCTATAGAAGATATGAAAAATGTGTCAACTGATAAGATGTTTTTGATAGTATGATAAACAATTAATCAGTTTACAACTTTTTTATATCTTTGACAGGTACCGTGAAAAATCGGCTCAAAGTAAAAAGTTAGGGGGCCCTTCTATTAAAGATACTACCGAAAAAAAAGCAAACTCACCATCGAACCTCCACTTATGATAGCAGGCTCCAAGCATGTCAAAACAAGTTTGTTTATTATATTCAGTAGATTCTCCCCATAAATACTCGATCGCAGTGTGGCTCATGTCCGGCCAATTTGGCTCGACAAACTGAAATTTTACCAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTTGGAAGGTCTCCAGATT</pcr_primer_p1>
		<pcr_primer_p2>ACATTCATCGAGCACTATATTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TACTTGGAAGGTCTCCAGATTTCGGGATTCTTCTCACATTCCATTCTGCATGATACAAAATGCAGAGCGATTCACAACACTGCTTCGGAGGCCTTGGAATCTTTATAATATCCGCGATGTGCTTGCAGAACAGATTTTCTCAAAGCCTCCTCCGATTCCGATGCCATCCATGAATTGAAAAAATTTCAAGTTGTATGCAAACTCATTCAATTCATATAGCTTTTTATCTAAAATATAGTGCTCGATGAATGT</canonical_amplicon>
		<polymorphic_amplicon>TACTTGGAAGGTCTCCAGATTTCGGGATTCTTCTCACATTCCATTCTGCATGATACAAAATGCAGAGCGATTCACAACACTGCTTCGGAGGCCTTGGAATCTTTATAATATCCGCGATGTGCTTGCAGAACAGATTTTCTCARAGCCTCCTCCGATTCCGATGCCATCCATGAATTGAAAAAATTTCAAGTTGTATGCAAACTCATTCAATTCATATAGCTTTTTATCTAAAATATAGTGCTCGATGAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31263</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>369060</contig_pos>
        <strand>+</strand>
        <context>ATTTTCTCAR[A/G]GCCTCCTCCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGGAATCTTTATAATATCCGCGATGTGCTTGCAGAACAGATTTTCTCAA</left_flank>
        <right_flank>GCCTCCTCCGATTCCGATGCCATCCATGAATTGAAAAAATTTCAAGTTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGTTCCATCCATCGACTTCTTGAAATTCAAAATTCACATGAAAAATGTTTCCTTCTGAATTCACGTCTTCTTTTTTGCAAAACATTGGAAAACAGATCGTATTTTGTGTCTTATTCAAACGTCTTCTGAACTTCCTTGTAATTTTTCCTTGCTTAGAATCCAATGAAACTTCCAATGAACACACACAACTTCTCTTGATGTCTCCAACTAGAACTCCACCAATCGAGAGAAACGTTTGATTTCTGAACGTCGAGTGAAAGAAACTCATGTTCCTGAAAATACGGTTTCTATTCATAAACACTGTCGAATCAAAAATCCACCACTGCATATTATGATCCATGAATATTTTAAAGATACTTGGAAGGTCTCCAGATTTCGGGATTCTTCTCACATTCCATTCTGCATGATACAAAATGCAGAGCGATTCACAACACTGCTTCGGAGGCCTTGGAATCTTTATAATATCCGCGATGTGCTTGCAGAACAGATTTTCTCAAAGCCTCCTCCGATTCCGATGCCATCCATGAATTGAAAAAATTTCAAGTTGTATGCAAACTCATTCAATTCATATAGCTTTTTATCTAAAATATAGTGCTCGATGAATGTCGAATGACCGTGAAATCTGTAATAGAATGCCCCACACACTGCCAAGTTTGAGCTTGATTATCTCGATTTCTATAGAAGATATGAAAAATGTGTCAACTGATAAGATGTTTTTGATAGTATGATAAACAATTAATCAGTTTACAACTTTTTTATATCTTTGACAGGTACCGTGAAAAATCGGCTCAAAGTAAAAAGTTAGGGGGCCCTTCTATTAAAGATACTACCGAAAAAAAAGCAAACTCACCATCGAACCTCCACTTATGATAGCAGGCTCCAAGCATGTCAAAACAAGTTTGTTTATTATATTCAGTAGATTCTCCCCATAAATACTCGATCGCAGTGTGGCTCATGTCCGGCCAATTTGGCTCGACAAACTGAAATTTTACCAATGA</canonical>
            <polymorphic>ATCGTTCCATCCATCGACTTCTTGAAATTCAAAATTCACATGAAAAATGTTTCCTTCTGAATTCACGTCTTCTTTTTTGCAAAACATTGGAAAACAGATCGTATTTTGTGTCTTATTCAAACGTCTTCTGAACTTCCTTGTAATTTTTCCTTGCTTAGAATCCAATGAAACTTCCAATGAACACACACAACTTCTCTTGATGTCTCCAACTAGAACTCCACCAATCGAGAGAAACGTTTGATTTCTGAACGTCGAGTGAAAGAAACTCATGTTCCTGAAAATACGGTTTCTATTCATAAACACTGTCGAATCAAAAATCCACCACTGCATATTATGATCCATGAATATTTTAAAGATACTTGGAAGGTCTCCAGATTTCGGGATTCTTCTCACATTCCATTCTGCATGATACAAAATGCAGAGCGATTCACAACACTGCTTCGGAGGCCTTGGAATCTTTATAATATCCGCGATGTGCTTGCAGAACAGATTTTCTCAARGCCTCCTCCGATTCCGATGCCATCCATGAATTGAAAAAATTTCAAGTTGTATGCAAACTCATTCAATTCATATAGCTTTTTATCTAAAATATAGTGCTCGATGAATGTCGAATGACCGTGAAATCTGTAATAGAATGCCCCACACACTGCCAAGTTTGAGCTTGATTATCTCGATTTCTATAGAAGATATGAAAAATGTGTCAACTGATAAGATGTTTTTGATAGTATGATAAACAATTAATCAGTTTACAACTTTTTTATATCTTTGACAGGTACCGTGAAAAATCGGCTCAAAGTAAAAAGTTAGGGGGCCCTTCTATTAAAGATACTACCGAAAAAAAAGCAAACTCACCATCGAACCTCCACTTATGATAGCAGGCTCCAAGCATGTCAAAACAAGTTTGTTTATTATATTCAGTAGATTCTCCCCATAAATACTCGATCGCAGTGTGGCTCATGTCCGGCCAATTTGGCTCGACAAACTGAAATTTTACCAATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>447 129 85 74 74 68 54 27 22 11 9</canonical_bands>
                <polymorphic_bands>447 129 128 85 74 68 27 22 11 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACTTGGAAGGTCTCCAGATT</pcr_primer_p1>
		<pcr_primer_p2>ACATTCATCGAGCACTATATTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TACTTGGAAGGTCTCCAGATTTCGGGATTCTTCTCACATTCCATTCTGCATGATACAAAATGCAGAGCGATTCACAACACTGCTTCGGAGGCCTTGGAATCTTTATAATATCCGCGATGTGCTTGCAGAACAGATTTTCTCAAAGCCTCCTCCGATTCCGATGCCATCCATGAATTGAAAAAATTTCAAGTTGTATGCAAACTCATTCAATTCATATAGCTTTTTATCTAAAATATAGTGCTCGATGAATGT</canonical_amplicon>
		<polymorphic_amplicon>TACTTGGAAGGTCTCCAGATTTCGGGATTCTTCTCACATTCCATTCTGCATGATACAAAATGCAGAGCGATTCACAACACTGCTTCGGAGGCCTTGGAATCTTTATAATATCCGCGATGTGCTTGCAGAACAGATTTTCTCAARGCCTCCTCCGATTCCGATGCCATCCATGAATTGAAAAAATTTCAAGTTGTATGCAAACTCATTCAATTCATATAGCTTTTTATCTAAAATATAGTGCTCGATGAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31264</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>369285</contig_pos>
        <strand></strand>
        <context>gtttttgata[G/A]tatgataaac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTCTATAGAAGATATGAAAAATGTGTCAACTGATAAGATGTTTTTGATA</left_flank>
        <right_flank>TATGATAAACAATTAATCAGTTTACAACTTTTTTATATCTTTGACAGGTA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGAGAAACGTTTGATTTCTGAACGTCGAGTGAAAGAAACTCATGTTCCTGAAAATACGGTTTCTATTCATAAACACTGTCGAATCAAAAATCCACCACTGCATATTATGATCCATGAATATTTTAAAGATACTTGGAAGGTCTCCAGATTTCGGGATTCTTCTCACATTCCATTCTGCATGATACAAAATGCAGAGCGATTCACAACACTGCTTCGGAGGCCTTGGAATCTTTATAATATCCGCGATGTGCTTGCAGAACAGATTTTCTCAAAGCCTCCTCCGATTCCGATGCCATCCATGAATTGAAAAAATTTCAAGTTGTATGCAAACTCATTCAATTCATATAGCTTTTTATCTAAAATATAGTGCTCGATGAATGTCGAATGACCGTGAAATCTGTAATAGAATGCCCCACACACTGCCAAGTTTGAGCTTGATTATCTCGATTTCTATAGAAGATATGAAAAATGTGTCAACTGATAAGATGTTTTTGATAGTATGATAAACAATTAATCAGTTTACAACTTTTTTATATCTTTGACAGGTACCGTGAAAAATCGGCTCAAAGTAAAAAGTTAGGGGGCCCTTCTATTAAAGATACTACCGAAAAAAAAGCAAACTCACCATCGAACCTCCACTTATGATAGCAGGCTCCAAGCATGTCAAAACAAGTTTGTTTATTATATTCAGTAGATTCTCCCCATAAATACTCGATCGCAGTGTGGCTCATGTCCGGCCAATTTGGCTCGACAAACTGAAATTTTACCAATGAAAAGATATTATCGCAATCATCGCACCTCAATCATCTCGTCGTAAGAATGTGGCCAGTAGGAAGGAGTTTCCTGATCAAGTGTATCAGTGTCGAATGCTTTATCTAACACAAGTCCATATTGAAACTTGTCATATCTGAAAACATGCAAAATGAATTAGGTTATGTCAAAGAAGGCTTACAAAATCTTGCATGGTGTTGTCTCGACTCGTCCATCATTAAGAACAT</canonical>
            <polymorphic>CGAGAGAAACGTTTGATTTCTGAACGTCGAGTGAAAGAAACTCATGTTCCTGAAAATACGGTTTCTATTCATAAACACTGTCGAATCAAAAATCCACCACTGCATATTATGATCCATGAATATTTTAAAGATACTTGGAAGGTCTCCAGATTTCGGGATTCTTCTCACATTCCATTCTGCATGATACAAAATGCAGAGCGATTCACAACACTGCTTCGGAGGCCTTGGAATCTTTATAATATCCGCGATGTGCTTGCAGAACAGATTTTCTCAAAGCCTCCTCCGATTCCGATGCCATCCATGAATTGAAAAAATTTCAAGTTGTATGCAAACTCATTCAATTCATATAGCTTTTTATCTAAAATATAGTGCTCGATGAATGTCGAATGACCGTGAAATCTGTAATAGAATGCCCCACACACTGCCAAGTTTGAGCTTGATTATCTCGATTTCTATAGAAGATATGAAAAATGTGTCAACTGATAAGATGTTTTTGATARTATGATAAACAATTAATCAGTTTACAACTTTTTTATATCTTTGACAGGTACCGTGAAAAATCGGCTCAAAGTAAAAAGTTAGGGGGCCCTTCTATTAAAGATACTACCGAAAAAAAAGCAAACTCACCATCGAACCTCCACTTATGATAGCAGGCTCCAAGCATGTCAAAACAAGTTTGTTTATTATATTCAGTAGATTCTCCCCATAAATACTCGATCGCAGTGTGGCTCATGTCCGGCCAATTTGGCTCGACAAACTGAAATTTTACCAATGAAAAGATATTATCGCAATCATCGCACCTCAATCATCTCGTCGTAAGAATGTGGCCAGTAGGAAGGAGTTTCCTGATCAAGTGTATCAGTGTCGAATGCTTTATCTAACACAAGTCCATATTGAAACTTGTCATATCTGAAAACATGCAAAATGAATTAGGTTATGTCAAAGAAGGCTTACAAAATCTTGCATGGTGTTGTCTCGACTCGTCCATCATTAAGAACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATATAGTGCTCGATGAATGTC</pcr_primer_p1>
		<pcr_primer_p2>ATAAGTGGAGGTTCGATGGT</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>AAATATAGTGCTCGATGAATGTCGAATGACCGTGAAATCTGTAATAGAATGCCCCACACACTGCCAAGTTTGAGCTTGATTATCTCGATTTCTATAGAAGATATGAAAAATGTGTCAACTGATAAGATGTTTTTGATAGTATGATAAACAATTAATCAGTTTACAACTTTTTTATATCTTTGACAGGTACCGTGAAAAATCGGCTCAAAGTAAAAAGTTAGGGGGCCCTTCTATTAAAGATACTACCGAAAAAAAAGCAAACTCACCATCGAACCTCCACTTAT</canonical_amplicon>
		<polymorphic_amplicon>AAATATAGTGCTCGATGAATGTCGAATGACCGTGAAATCTGTAATAGAATGCCCCACACACTGCCAAGTTTGAGCTTGATTATCTCGATTTCTATAGAAGATATGAAAAATGTGTCAACTGATAAGATGTTTTTGATARTATGATAAACAATTAATCAGTTTACAACTTTTTTATATCTTTGACAGGTACCGTGAAAAATCGGCTCAAAGTAAAAAGTTAGGGGGCCCTTCTATTAAAGATACTACCGAAAAAAAAGCAAACTCACCATCGAACCTCCACTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31265</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>370587</contig_pos>
        <strand></strand>
        <context>GAAACGATTC[T/C]CATACTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCGTGGTGGGAAGGTAATCCGACCAGATGATGCCGCACTTGAAACGATTC</left_flank>
        <right_flank>CATACTTTTTGAAAAAAAAATGCTGAACCTTCTGAACGCCAACTAGGACT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCATCCTGAATCCCATCACATTGCAGCATAAAATCGATTGCAGGAATATTGCGAACCTCGGAGTATTCCAAAGATATCGTCCTGAATTTTAAAATTCAAAATCTTCTGATTTTGGAATTGCTCACTCTACCATGTGTAACCACCATGTTCTACTGTAACTGGTGGTTTTAAATGACCTGTTTTAGTGAATAAATTAGTGACAACTGTTGCTTTCATTTGGAAATTCCAATAGAAAATATCAATAAATGAGGAGAAGACTAATAGAGAAGGAGTATTAGGGGAAAGGAGGAACAGAGAAAAAAGAACAGAATAGTGGTACAAATGATTAGAGAAAAGAGAAATAGACGTCGAATGTGTTTGTTTGTGAGGAAGAGGGGAACATGATGGGAAGTGTGACCTAGAAATAGAAGCATGGACAAGAAGAATGGAATGCATTTGGATTGATTAGCGTGGTGGGAAGGTAATCCGACCAGATGATGCCGCACTTGAAACGATTCTCATACTTTTTGAAAAAAAAATGCTGAACCTTCTGAACGCCAACTAGGACTTTGCCGGAAACTTCTGGTCGGAGGTTGGTCAGTTTCCGCATAAGACCGCTAAATCTGACCATGTCTCACCCATGGCCCACTGTTCAGCCGTTTTCTGGCAAGTTCCGACAGAACGTGGACAATATCGGTCCAAAAACGAAACCACGCCCATAAATTCTCACTATCGATTGTTTAAAAAAGAAGACACACATTAGATGATTTATGAAGTTTTTTATGTTTACTACTCTATCTTATCTTGTTGACTTTTTCAAAAGAAATGTTTTTTTCTACCAGTCCCATCTGGTTTGTATTATATTTTTCTTCAAAAACACATACATCAATGACACTAGCTTCTTACCCAAACTGATGCAAAAATGATCCAATATTAACCATGAAACCACAAATTATTGCACAATTTGCCTTCAAAGTTTGCCTGATGTTAGTTTTATGGTTTGTGCTATGGTAAACCCC</canonical>
            <polymorphic>TTCCATCCTGAATCCCATCACATTGCAGCATAAAATCGATTGCAGGAATATTGCGAACCTCGGAGTATTCCAAAGATATCGTCCTGAATTTTAAAATTCAAAATCTTCTGATTTTGGAATTGCTCACTCTACCATGTGTAACCACCATGTTCTACTGTAACTGGTGGTTTTAAATGACCTGTTTTAGTGAATAAATTAGTGACAACTGTTGCTTTCATTTGGAAATTCCAATAGAAAATATCAATAAATGAGGAGAAGACTAATAGAGAAGGAGTATTAGGGGAAAGGAGGAACAGAGAAAAAAGAACAGAATAGTGGTACAAATGATTAGAGAAAAGAGAAATAGACGTCGAATGTGTTTGTTTGTGAGGAAGAGGGGAACATGATGGGAAGTGTGACCTAGAAATAGAAGCATGGACAAGAAGAATGGAATGCATTTGGATTGATTAGCGTGGTGGGAAGGTAATCCGACCAGATGATGCCGCACTTGAAACGATTCYCATACTTTTTGAAAAAAAAATGCTGAACCTTCTGAACGCCAACTAGGACTTTGCCGGAAACTTCTGGTCGGAGGTTGGTCAGTTTCCGCATAAGACCGCTAAATCTGACCATGTCTCACCCATGGCCCACTGTTCAGCCGTTTTCTGGCAAGTTCCGACAGAACGTGGACAATATCGGTCCAAAAACGAAACCACGCCCATAAATTCTCACTATCGATTGTTTAAAAAAGAAGACACACATTAGATGATTTATGAAGTTTTTTATGTTTACTACTCTATCTTATCTTGTTGACTTTTTCAAAAGAAATGTTTTTTTCTACCAGTCCCATCTGGTTTGTATTATATTTTTCTTCAAAAACACATACATCAATGACACTAGCTTCTTACCCAAACTGATGCAAAAATGATCCAATATTAACCATGAAACCACAAATTATTGCACAATTTGCCTTCAAAGTTTGCCTGATGTTAGTTTTATGGTTTGTGCTATGGTAAACCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGCATTTGGATTGATTAGC</pcr_primer_p1>
		<pcr_primer_p2>CAATCGATAGTGAGAATTTATGG</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>ATGCATTTGGATTGATTAGCGTGGTGGGAAGGTAATCCGACCAGATGATGCCGCACTTGAAACGATTCTCATACTTTTTGAAAAAAAAATGCTGAACCTTCTGAACGCCAACTAGGACTTTGCCGGAAACTTCTGGTCGGAGGTTGGTCAGTTTCCGCATAAGACCGCTAAATCTGACCATGTCTCACCCATGGCCCACTGTTCAGCCGTTTTCTGGCAAGTTCCGACAGAACGTGGACAATATCGGTCCAAAAACGAAACCACGCCCATAAATTCTCACTATCGATTG</canonical_amplicon>
		<polymorphic_amplicon>ATGCATTTGGATTGATTAGCGTGGTGGGAAGGTAATCCGACCAGATGATGCCGCACTTGAAACGATTCYCATACTTTTTGAAAAAAAAATGCTGAACCTTCTGAACGCCAACTAGGACTTTGCCGGAAACTTCTGGTCGGAGGTTGGTCAGTTTCCGCATAAGACCGCTAAATCTGACCATGTCTCACCCATGGCCCACTGTTCAGCCGTTTTCTGGCAAGTTCCGACAGAACGTGGACAATATCGGTCCAAAAACGAAACCACGCCCATAAATTCTCACTATCGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31266</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>370669</contig_pos>
        <strand></strand>
        <context>aggttggtca[G/T]tttccgcata</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTGAACGCCAACTAGGACTTTGCCGGAAACTTCTGGTCGGAGGTTGGTCA</left_flank>
        <right_flank>TTTCCGCATAAGACCGCTAAATCTGACCATGTCTCACCCATGGCCCACTG</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGAATTTTAAAATTCAAAATCTTCTGATTTTGGAATTGCTCACTCTACCATGTGTAACCACCATGTTCTACTGTAACTGGTGGTTTTAAATGACCTGTTTTAGTGAATAAATTAGTGACAACTGTTGCTTTCATTTGGAAATTCCAATAGAAAATATCAATAAATGAGGAGAAGACTAATAGAGAAGGAGTATTAGGGGAAAGGAGGAACAGAGAAAAAAGAACAGAATAGTGGTACAAATGATTAGAGAAAAGAGAAATAGACGTCGAATGTGTTTGTTTGTGAGGAAGAGGGGAACATGATGGGAAGTGTGACCTAGAAATAGAAGCATGGACAAGAAGAATGGAATGCATTTGGATTGATTAGCGTGGTGGGAAGGTAATCCGACCAGATGATGCCGCACTTGAAACGATTCTCATACTTTTTGAAAAAAAAATGCTGAACCTTCTGAACGCCAACTAGGACTTTGCCGGAAACTTCTGGTCGGAGGTTGGTCAGTTTCCGCATAAGACCGCTAAATCTGACCATGTCTCACCCATGGCCCACTGTTCAGCCGTTTTCTGGCAAGTTCCGACAGAACGTGGACAATATCGGTCCAAAAACGAAACCACGCCCATAAATTCTCACTATCGATTGTTTAAAAAAGAAGACACACATTAGATGATTTATGAAGTTTTTTATGTTTACTACTCTATCTTATCTTGTTGACTTTTTCAAAAGAAATGTTTTTTTCTACCAGTCCCATCTGGTTTGTATTATATTTTTCTTCAAAAACACATACATCAATGACACTAGCTTCTTACCCAAACTGATGCAAAAATGATCCAATATTAACCATGAAACCACAAATTATTGCACAATTTGCCTTCAAAGTTTGCCTGATGTTAGTTTTATGGTTTGTGCTATGGTAAACCCCCATTTCACCTTTCATTCGTCTAATTCTCTTCTTCTCTCTCAATATTTGTCACTTCCTGTCTATCATCCCTCTTATCATACCT</canonical>
            <polymorphic>CCTGAATTTTAAAATTCAAAATCTTCTGATTTTGGAATTGCTCACTCTACCATGTGTAACCACCATGTTCTACTGTAACTGGTGGTTTTAAATGACCTGTTTTAGTGAATAAATTAGTGACAACTGTTGCTTTCATTTGGAAATTCCAATAGAAAATATCAATAAATGAGGAGAAGACTAATAGAGAAGGAGTATTAGGGGAAAGGAGGAACAGAGAAAAAAGAACAGAATAGTGGTACAAATGATTAGAGAAAAGAGAAATAGACGTCGAATGTGTTTGTTTGTGAGGAAGAGGGGAACATGATGGGAAGTGTGACCTAGAAATAGAAGCATGGACAAGAAGAATGGAATGCATTTGGATTGATTAGCGTGGTGGGAAGGTAATCCGACCAGATGATGCCGCACTTGAAACGATTCTCATACTTTTTGAAAAAAAAATGCTGAACCTTCTGAACGCCAACTAGGACTTTGCCGGAAACTTCTGGTCGGAGGTTGGTCAKTTTCCGCATAAGACCGCTAAATCTGACCATGTCTCACCCATGGCCCACTGTTCAGCCGTTTTCTGGCAAGTTCCGACAGAACGTGGACAATATCGGTCCAAAAACGAAACCACGCCCATAAATTCTCACTATCGATTGTTTAAAAAAGAAGACACACATTAGATGATTTATGAAGTTTTTTATGTTTACTACTCTATCTTATCTTGTTGACTTTTTCAAAAGAAATGTTTTTTTCTACCAGTCCCATCTGGTTTGTATTATATTTTTCTTCAAAAACACATACATCAATGACACTAGCTTCTTACCCAAACTGATGCAAAAATGATCCAATATTAACCATGAAACCACAAATTATTGCACAATTTGCCTTCAAAGTTTGCCTGATGTTAGTTTTATGGTTTGTGCTATGGTAAACCCCCATTTCACCTTTCATTCGTCTAATTCTCTTCTTCTCTCTCAATATTTGTCACTTCCTGTCTATCATCCCTCTTATCATACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGTAATCCGACCAGATGAT</pcr_primer_p1>
		<pcr_primer_p2>CAATCGATAGTGAGAATTTATGG</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>AGGTAATCCGACCAGATGATGCCGCACTTGAAACGATTCTCATACTTTTTGAAAAAAAAATGCTGAACCTTCTGAACGCCAACTAGGACTTTGCCGGAAACTTCTGGTCGGAGGTTGGTCAGTTTCCGCATAAGACCGCTAAATCTGACCATGTCTCACCCATGGCCCACTGTTCAGCCGTTTTCTGGCAAGTTCCGACAGAACGTGGACAATATCGGTCCAAAAACGAAACCACGCCCATAAATTCTCACTATCGATTG</canonical_amplicon>
		<polymorphic_amplicon>AGGTAATCCGACCAGATGATGCCGCACTTGAAACGATTCTCATACTTTTTGAAAAAAAAATGCTGAACCTTCTGAACGCCAACTAGGACTTTGCCGGAAACTTCTGGTCGGAGGTTGGTCAKTTTCCGCATAAGACCGCTAAATCTGACCATGTCTCACCCATGGCCCACTGTTCAGCCGTTTTCTGGCAAGTTCCGACAGAACGTGGACAATATCGGTCCAAAAACGAAACCACGCCCATAAATTCTCACTATCGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31267</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>370701</contig_pos>
        <strand></strand>
        <context>tctgaccatg[T/G]ctcacccatg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CTGGTCGGAGGTTGGTCAGTTTCCGCATAAGACCGCTAAATCTGACCATG</left_flank>
        <right_flank>CTCACCCATGGCCCACTGTTCAGCCGTTTTCTGGCAAGTTCCGACAGAAC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAATTGCTCACTCTACCATGTGTAACCACCATGTTCTACTGTAACTGGTGGTTTTAAATGACCTGTTTTAGTGAATAAATTAGTGACAACTGTTGCTTTCATTTGGAAATTCCAATAGAAAATATCAATAAATGAGGAGAAGACTAATAGAGAAGGAGTATTAGGGGAAAGGAGGAACAGAGAAAAAAGAACAGAATAGTGGTACAAATGATTAGAGAAAAGAGAAATAGACGTCGAATGTGTTTGTTTGTGAGGAAGAGGGGAACATGATGGGAAGTGTGACCTAGAAATAGAAGCATGGACAAGAAGAATGGAATGCATTTGGATTGATTAGCGTGGTGGGAAGGTAATCCGACCAGATGATGCCGCACTTGAAACGATTCTCATACTTTTTGAAAAAAAAATGCTGAACCTTCTGAACGCCAACTAGGACTTTGCCGGAAACTTCTGGTCGGAGGTTGGTCAGTTTCCGCATAAGACCGCTAAATCTGACCATGTCTCACCCATGGCCCACTGTTCAGCCGTTTTCTGGCAAGTTCCGACAGAACGTGGACAATATCGGTCCAAAAACGAAACCACGCCCATAAATTCTCACTATCGATTGTTTAAAAAAGAAGACACACATTAGATGATTTATGAAGTTTTTTATGTTTACTACTCTATCTTATCTTGTTGACTTTTTCAAAAGAAATGTTTTTTTCTACCAGTCCCATCTGGTTTGTATTATATTTTTCTTCAAAAACACATACATCAATGACACTAGCTTCTTACCCAAACTGATGCAAAAATGATCCAATATTAACCATGAAACCACAAATTATTGCACAATTTGCCTTCAAAGTTTGCCTGATGTTAGTTTTATGGTTTGTGCTATGGTAAACCCCCATTTCACCTTTCATTCGTCTAATTCTCTTCTTCTCTCTCAATATTTGTCACTTCCTGTCTATCATCCCTCTTATCATACCTCGTTCTCTCAGAAATCACAGACACAGTTGTGA</canonical>
            <polymorphic>TGGAATTGCTCACTCTACCATGTGTAACCACCATGTTCTACTGTAACTGGTGGTTTTAAATGACCTGTTTTAGTGAATAAATTAGTGACAACTGTTGCTTTCATTTGGAAATTCCAATAGAAAATATCAATAAATGAGGAGAAGACTAATAGAGAAGGAGTATTAGGGGAAAGGAGGAACAGAGAAAAAAGAACAGAATAGTGGTACAAATGATTAGAGAAAAGAGAAATAGACGTCGAATGTGTTTGTTTGTGAGGAAGAGGGGAACATGATGGGAAGTGTGACCTAGAAATAGAAGCATGGACAAGAAGAATGGAATGCATTTGGATTGATTAGCGTGGTGGGAAGGTAATCCGACCAGATGATGCCGCACTTGAAACGATTCTCATACTTTTTGAAAAAAAAATGCTGAACCTTCTGAACGCCAACTAGGACTTTGCCGGAAACTTCTGGTCGGAGGTTGGTCAGTTTCCGCATAAGACCGCTAAATCTGACCATGKCTCACCCATGGCCCACTGTTCAGCCGTTTTCTGGCAAGTTCCGACAGAACGTGGACAATATCGGTCCAAAAACGAAACCACGCCCATAAATTCTCACTATCGATTGTTTAAAAAAGAAGACACACATTAGATGATTTATGAAGTTTTTTATGTTTACTACTCTATCTTATCTTGTTGACTTTTTCAAAAGAAATGTTTTTTTCTACCAGTCCCATCTGGTTTGTATTATATTTTTCTTCAAAAACACATACATCAATGACACTAGCTTCTTACCCAAACTGATGCAAAAATGATCCAATATTAACCATGAAACCACAAATTATTGCACAATTTGCCTTCAAAGTTTGCCTGATGTTAGTTTTATGGTTTGTGCTATGGTAAACCCCCATTTCACCTTTCATTCGTCTAATTCTCTTCTTCTCTCTCAATATTTGTCACTTCCTGTCTATCATCCCTCTTATCATACCTCGTTCTCTCAGAAATCACAGACACAGTTGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNGTC</site>
                <isoschizomers>
                    <enzyme>AspI</enzyme>
                    <enzyme>PflFI</enzyme>
                    <enzyme>PsyI</enzyme>
                    <enzyme>TelI</enzyme>
                    <enzyme>Tth111I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGTAATCCGACCAGATGAT</pcr_primer_p1>
		<pcr_primer_p2>CAATCGATAGTGAGAATTTATGG</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>AGGTAATCCGACCAGATGATGCCGCACTTGAAACGATTCTCATACTTTTTGAAAAAAAAATGCTGAACCTTCTGAACGCCAACTAGGACTTTGCCGGAAACTTCTGGTCGGAGGTTGGTCAGTTTCCGCATAAGACCGCTAAATCTGACCATGTCTCACCCATGGCCCACTGTTCAGCCGTTTTCTGGCAAGTTCCGACAGAACGTGGACAATATCGGTCCAAAAACGAAACCACGCCCATAAATTCTCACTATCGATTG</canonical_amplicon>
		<polymorphic_amplicon>AGGTAATCCGACCAGATGATGCCGCACTTGAAACGATTCTCATACTTTTTGAAAAAAAAATGCTGAACCTTCTGAACGCCAACTAGGACTTTGCCGGAAACTTCTGGTCGGAGGTTGGTCAGTTTCCGCATAAGACCGCTAAATCTGACCATGKCTCACCCATGGCCCACTGTTCAGCCGTTTTCTGGCAAGTTCCGACAGAACGTGGACAATATCGGTCCAAAAACGAAACCACGCCCATAAATTCTCACTATCGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31268</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>370831</contig_pos>
        <strand>+</strand>
        <context>ACACACATTA[G/T]ATGATTTATG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACGCCCATAAATTCTCACTATCGATTGTTTAAAAAAGAAGACACACATTA</left_flank>
        <right_flank>ATGATTTATGAAGTTTTTTATGTTTACTACTCTATCTTATCTTGTTGACT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATGAGGAGAAGACTAATAGAGAAGGAGTATTAGGGGAAAGGAGGAACAGAGAAAAAAGAACAGAATAGTGGTACAAATGATTAGAGAAAAGAGAAATAGACGTCGAATGTGTTTGTTTGTGAGGAAGAGGGGAACATGATGGGAAGTGTGACCTAGAAATAGAAGCATGGACAAGAAGAATGGAATGCATTTGGATTGATTAGCGTGGTGGGAAGGTAATCCGACCAGATGATGCCGCACTTGAAACGATTCTCATACTTTTTGAAAAAAAAATGCTGAACCTTCTGAACGCCAACTAGGACTTTGCCGGAAACTTCTGGTCGGAGGTTGGTCAGTTTCCGCATAAGACCGCTAAATCTGACCATGTCTCACCCATGGCCCACTGTTCAGCCGTTTTCTGGCAAGTTCCGACAGAACGTGGACAATATCGGTCCAAAAACGAAACCACGCCCATAAATTCTCACTATCGATTGTTTAAAAAAGAAGACACACATTAGATGATTTATGAAGTTTTTTATGTTTACTACTCTATCTTATCTTGTTGACTTTTTCAAAAGAAATGTTTTTTTCTACCAGTCCCATCTGGTTTGTATTATATTTTTCTTCAAAAACACATACATCAATGACACTAGCTTCTTACCCAAACTGATGCAAAAATGATCCAATATTAACCATGAAACCACAAATTATTGCACAATTTGCCTTCAAAGTTTGCCTGATGTTAGTTTTATGGTTTGTGCTATGGTAAACCCCCATTTCACCTTTCATTCGTCTAATTCTCTTCTTCTCTCTCAATATTTGTCACTTCCTGTCTATCATCCCTCTTATCATACCTCGTTCTCTCAGAAATCACAGACACAGTTGTGACTAAAGTTCCACTATTTATATTATCGAATTTTTAAAGGTTTGAGTTCATTTTGACCAAATGTTTCTACAATTGTTCAAAGTTTGGATAGGAGTTTTTTCCGTTTCCTTTCTTTTTCTTCCAATTTTGTTG</canonical>
            <polymorphic>TAAATGAGGAGAAGACTAATAGAGAAGGAGTATTAGGGGAAAGGAGGAACAGAGAAAAAAGAACAGAATAGTGGTACAAATGATTAGAGAAAAGAGAAATAGACGTCGAATGTGTTTGTTTGTGAGGAAGAGGGGAACATGATGGGAAGTGTGACCTAGAAATAGAAGCATGGACAAGAAGAATGGAATGCATTTGGATTGATTAGCGTGGTGGGAAGGTAATCCGACCAGATGATGCCGCACTTGAAACGATTCTCATACTTTTTGAAAAAAAAATGCTGAACCTTCTGAACGCCAACTAGGACTTTGCCGGAAACTTCTGGTCGGAGGTTGGTCAGTTTCCGCATAAGACCGCTAAATCTGACCATGTCTCACCCATGGCCCACTGTTCAGCCGTTTTCTGGCAAGTTCCGACAGAACGTGGACAATATCGGTCCAAAAACGAAACCACGCCCATAAATTCTCACTATCGATTGTTTAAAAAAGAAGACACACATTAKATGATTTATGAAGTTTTTTATGTTTACTACTCTATCTTATCTTGTTGACTTTTTCAAAAGAAATGTTTTTTTCTACCAGTCCCATCTGGTTTGTATTATATTTTTCTTCAAAAACACATACATCAATGACACTAGCTTCTTACCCAAACTGATGCAAAAATGATCCAATATTAACCATGAAACCACAAATTATTGCACAATTTGCCTTCAAAGTTTGCCTGATGTTAGTTTTATGGTTTGTGCTATGGTAAACCCCCATTTCACCTTTCATTCGTCTAATTCTCTTCTTCTCTCTCAATATTTGTCACTTCCTGTCTATCATCCCTCTTATCATACCTCGTTCTCTCAGAAATCACAGACACAGTTGTGACTAAAGTTCCACTATTTATATTATCGAATTTTTAAAGGTTTGAGTTCATTTTGACCAAATGTTTCTACAATTGTTCAAAGTTTGGATAGGAGTTTTTTCCGTTTCCTTTCTTTTTCTTCCAATTTTGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGCCCATAAATTCTCACTAT</pcr_primer_p1>
		<pcr_primer_p2>AATAATTTGTGGTTTCATGGTTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACGCCCATAAATTCTCACTATCGATTGTTTAAAAAAGAAGACACACATTAGATGATTTATGAAGTTTTTTATGTTTACTACTCTATCTTATCTTGTTGACTTTTTCAAAAGAAATGTTTTTTTCTACCAGTCCCATCTGGTTTGTATTATATTTTTCTTCAAAAACACATACATCAATGACACTAGCTTCTTACCCAAACTGATGCAAAAATGATCCAATATTAACCATGAAACCACAAATTATT</canonical_amplicon>
		<polymorphic_amplicon>ACGCCCATAAATTCTCACTATCGATTGTTTAAAAAAGAAGACACACATTAKATGATTTATGAAGTTTTTTATGTTTACTACTCTATCTTATCTTGTTGACTTTTTCAAAAGAAATGTTTTTTTCTACCAGTCCCATCTGGTTTGTATTATATTTTTCTTCAAAAACACATACATCAATGACACTAGCTTCTTACCCAAACTGATGCAAAAATGATCCAATATTAACCATGAAACCACAAATTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31269</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>370866</contig_pos>
        <strand></strand>
        <context>TACTACTCTA[T/A]WTTATCTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGAAGACACACATTAGATGATTTATGAAGTTTTTTATGTTTACTACTCTA</left_flank>
        <right_flank>CTTATCTTGTTGACTTTTTCAAAAGAAATGTTTTTTTCTACCAGTCCCAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGGAAAGGAGGAACAGAGAAAAAAGAACAGAATAGTGGTACAAATGATTAGAGAAAAGAGAAATAGACGTCGAATGTGTTTGTTTGTGAGGAAGAGGGGAACATGATGGGAAGTGTGACCTAGAAATAGAAGCATGGACAAGAAGAATGGAATGCATTTGGATTGATTAGCGTGGTGGGAAGGTAATCCGACCAGATGATGCCGCACTTGAAACGATTCTCATACTTTTTGAAAAAAAAATGCTGAACCTTCTGAACGCCAACTAGGACTTTGCCGGAAACTTCTGGTCGGAGGTTGGTCAGTTTCCGCATAAGACCGCTAAATCTGACCATGTCTCACCCATGGCCCACTGTTCAGCCGTTTTCTGGCAAGTTCCGACAGAACGTGGACAATATCGGTCCAAAAACGAAACCACGCCCATAAATTCTCACTATCGATTGTTTAAAAAAGAAGACACACATTAGATGATTTATGAAGTTTTTTATGTTTACTACTCTATCTTATCTTGTTGACTTTTTCAAAAGAAATGTTTTTTTCTACCAGTCCCATCTGGTTTGTATTATATTTTTCTTCAAAAACACATACATCAATGACACTAGCTTCTTACCCAAACTGATGCAAAAATGATCCAATATTAACCATGAAACCACAAATTATTGCACAATTTGCCTTCAAAGTTTGCCTGATGTTAGTTTTATGGTTTGTGCTATGGTAAACCCCCATTTCACCTTTCATTCGTCTAATTCTCTTCTTCTCTCTCAATATTTGTCACTTCCTGTCTATCATCCCTCTTATCATACCTCGTTCTCTCAGAAATCACAGACACAGTTGTGACTAAAGTTCCACTATTTATATTATCGAATTTTTAAAGGTTTGAGTTCATTTTGACCAAATGTTTCTACAATTGTTCAAAGTTTGGATAGGAGTTTTTTCCGTTTCCTTTCTTTTTCTTCCAATTTTGTTGGTGCTGGATTGGAGGAAAAGAGGAACCGCTGAGGG</canonical>
            <polymorphic>GGGGAAAGGAGGAACAGAGAAAAAAGAACAGAATAGTGGTACAAATGATTAGAGAAAAGAGAAATAGACGTCGAATGTGTTTGTTTGTGAGGAAGAGGGGAACATGATGGGAAGTGTGACCTAGAAATAGAAGCATGGACAAGAAGAATGGAATGCATTTGGATTGATTAGCGTGGTGGGAAGGTAATCCGACCAGATGATGCCGCACTTGAAACGATTCTCATACTTTTTGAAAAAAAAATGCTGAACCTTCTGAACGCCAACTAGGACTTTGCCGGAAACTTCTGGTCGGAGGTTGGTCAGTTTCCGCATAAGACCGCTAAATCTGACCATGTCTCACCCATGGCCCACTGTTCAGCCGTTTTCTGGCAAGTTCCGACAGAACGTGGACAATATCGGTCCAAAAACGAAACCACGCCCATAAATTCTCACTATCGATTGTTTAAAAAAGAAGACACACATTAGATGATTTATGAAGTTTTTTATGTTTACTACTCTAWCTTATCTTGTTGACTTTTTCAAAAGAAATGTTTTTTTCTACCAGTCCCATCTGGTTTGTATTATATTTTTCTTCAAAAACACATACATCAATGACACTAGCTTCTTACCCAAACTGATGCAAAAATGATCCAATATTAACCATGAAACCACAAATTATTGCACAATTTGCCTTCAAAGTTTGCCTGATGTTAGTTTTATGGTTTGTGCTATGGTAAACCCCCATTTCACCTTTCATTCGTCTAATTCTCTTCTTCTCTCTCAATATTTGTCACTTCCTGTCTATCATCCCTCTTATCATACCTCGTTCTCTCAGAAATCACAGACACAGTTGTGACTAAAGTTCCACTATTTATATTATCGAATTTTTAAAGGTTTGAGTTCATTTTGACCAAATGTTTCTACAATTGTTCAAAGTTTGGATAGGAGTTTTTTCCGTTTCCTTTCTTTTTCTTCCAATTTTGTTGGTGCTGGATTGGAGGAAAAGAGGAACCGCTGAGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGCCCATAAATTCTCACTAT</pcr_primer_p1>
		<pcr_primer_p2>AATAATTTGTGGTTTCATGGTTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACGCCCATAAATTCTCACTATCGATTGTTTAAAAAAGAAGACACACATTAGATGATTTATGAAGTTTTTTATGTTTACTACTCTATCTTATCTTGTTGACTTTTTCAAAAGAAATGTTTTTTTCTACCAGTCCCATCTGGTTTGTATTATATTTTTCTTCAAAAACACATACATCAATGACACTAGCTTCTTACCCAAACTGATGCAAAAATGATCCAATATTAACCATGAAACCACAAATTATT</canonical_amplicon>
		<polymorphic_amplicon>ACGCCCATAAATTCTCACTATCGATTGTTTAAAAAAGAAGACACACATTAGATGATTTATGAAGTTTTTTATGTTTACTACTCTAWCTTATCTTGTTGACTTTTTCAAAAGAAATGTTTTTTTCTACCAGTCCCATCTGGTTTGTATTATATTTTTCTTCAAAAACACATACATCAATGACACTAGCTTCTTACCCAAACTGATGCAAAAATGATCCAATATTAACCATGAAACCACAAATTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31270</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>370867</contig_pos>
        <strand>+</strand>
        <context>ACTACTCTAW[A/T]TTATCTTGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAGACACACATTAGATGATTTATGAAGTTTTTTATGTTTACTACTCTAT</left_flank>
        <right_flank>TTATCTTGTTGACTTTTTCAAAAGAAATGTTTTTTTCTACCAGTCCCATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGAAAGGAGGAACAGAGAAAAAAGAACAGAATAGTGGTACAAATGATTAGAGAAAAGAGAAATAGACGTCGAATGTGTTTGTTTGTGAGGAAGAGGGGAACATGATGGGAAGTGTGACCTAGAAATAGAAGCATGGACAAGAAGAATGGAATGCATTTGGATTGATTAGCGTGGTGGGAAGGTAATCCGACCAGATGATGCCGCACTTGAAACGATTCTCATACTTTTTGAAAAAAAAATGCTGAACCTTCTGAACGCCAACTAGGACTTTGCCGGAAACTTCTGGTCGGAGGTTGGTCAGTTTCCGCATAAGACCGCTAAATCTGACCATGTCTCACCCATGGCCCACTGTTCAGCCGTTTTCTGGCAAGTTCCGACAGAACGTGGACAATATCGGTCCAAAAACGAAACCACGCCCATAAATTCTCACTATCGATTGTTTAAAAAAGAAGACACACATTAGATGATTTATGAAGTTTTTTATGTTTACTACTCTATCTTATCTTGTTGACTTTTTCAAAAGAAATGTTTTTTTCTACCAGTCCCATCTGGTTTGTATTATATTTTTCTTCAAAAACACATACATCAATGACACTAGCTTCTTACCCAAACTGATGCAAAAATGATCCAATATTAACCATGAAACCACAAATTATTGCACAATTTGCCTTCAAAGTTTGCCTGATGTTAGTTTTATGGTTTGTGCTATGGTAAACCCCCATTTCACCTTTCATTCGTCTAATTCTCTTCTTCTCTCTCAATATTTGTCACTTCCTGTCTATCATCCCTCTTATCATACCTCGTTCTCTCAGAAATCACAGACACAGTTGTGACTAAAGTTCCACTATTTATATTATCGAATTTTTAAAGGTTTGAGTTCATTTTGACCAAATGTTTCTACAATTGTTCAAAGTTTGGATAGGAGTTTTTTCCGTTTCCTTTCTTTTTCTTCCAATTTTGTTGGTGCTGGATTGGAGGAAAAGAGGAACCGCTGAGGGA</canonical>
            <polymorphic>GGGAAAGGAGGAACAGAGAAAAAAGAACAGAATAGTGGTACAAATGATTAGAGAAAAGAGAAATAGACGTCGAATGTGTTTGTTTGTGAGGAAGAGGGGAACATGATGGGAAGTGTGACCTAGAAATAGAAGCATGGACAAGAAGAATGGAATGCATTTGGATTGATTAGCGTGGTGGGAAGGTAATCCGACCAGATGATGCCGCACTTGAAACGATTCTCATACTTTTTGAAAAAAAAATGCTGAACCTTCTGAACGCCAACTAGGACTTTGCCGGAAACTTCTGGTCGGAGGTTGGTCAGTTTCCGCATAAGACCGCTAAATCTGACCATGTCTCACCCATGGCCCACTGTTCAGCCGTTTTCTGGCAAGTTCCGACAGAACGTGGACAATATCGGTCCAAAAACGAAACCACGCCCATAAATTCTCACTATCGATTGTTTAAAAAAGAAGACACACATTAGATGATTTATGAAGTTTTTTATGTTTACTACTCTATWTTATCTTGTTGACTTTTTCAAAAGAAATGTTTTTTTCTACCAGTCCCATCTGGTTTGTATTATATTTTTCTTCAAAAACACATACATCAATGACACTAGCTTCTTACCCAAACTGATGCAAAAATGATCCAATATTAACCATGAAACCACAAATTATTGCACAATTTGCCTTCAAAGTTTGCCTGATGTTAGTTTTATGGTTTGTGCTATGGTAAACCCCCATTTCACCTTTCATTCGTCTAATTCTCTTCTTCTCTCTCAATATTTGTCACTTCCTGTCTATCATCCCTCTTATCATACCTCGTTCTCTCAGAAATCACAGACACAGTTGTGACTAAAGTTCCACTATTTATATTATCGAATTTTTAAAGGTTTGAGTTCATTTTGACCAAATGTTTCTACAATTGTTCAAAGTTTGGATAGGAGTTTTTTCCGTTTCCTTTCTTTTTCTTCCAATTTTGTTGGTGCTGGATTGGAGGAAAAGAGGAACCGCTGAGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGCCCATAAATTCTCACTAT</pcr_primer_p1>
		<pcr_primer_p2>AATAATTTGTGGTTTCATGGTTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACGCCCATAAATTCTCACTATCGATTGTTTAAAAAAGAAGACACACATTAGATGATTTATGAAGTTTTTTATGTTTACTACTCTATCTTATCTTGTTGACTTTTTCAAAAGAAATGTTTTTTTCTACCAGTCCCATCTGGTTTGTATTATATTTTTCTTCAAAAACACATACATCAATGACACTAGCTTCTTACCCAAACTGATGCAAAAATGATCCAATATTAACCATGAAACCACAAATTATT</canonical_amplicon>
		<polymorphic_amplicon>ACGCCCATAAATTCTCACTATCGATTGTTTAAAAAAGAAGACACACATTAGATGATTTATGAAGTTTTTTATGTTTACTACTCTATWTTATCTTGTTGACTTTTTCAAAAGAAATGTTTTTTTCTACCAGTCCCATCTGGTTTGTATTATATTTTTCTTCAAAAACACATACATCAATGACACTAGCTTCTTACCCAAACTGATGCAAAAATGATCCAATATTAACCATGAAACCACAAATTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31271</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>371026</contig_pos>
        <strand>+</strand>
        <context>ACAAATTATT[G/T]CACAATTTGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAAACTGATGCAAAAATGATCCAATATTAACCATGAAACCACAAATTATT</left_flank>
        <right_flank>CACAATTTGCCTTCAAAGTTTGCCTGATGTTAGTTTTATGGTTTGTGCTA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATTGATTAGCGTGGTGGGAAGGTAATCCGACCAGATGATGCCGCACTTGAAACGATTCTCATACTTTTTGAAAAAAAAATGCTGAACCTTCTGAACGCCAACTAGGACTTTGCCGGAAACTTCTGGTCGGAGGTTGGTCAGTTTCCGCATAAGACCGCTAAATCTGACCATGTCTCACCCATGGCCCACTGTTCAGCCGTTTTCTGGCAAGTTCCGACAGAACGTGGACAATATCGGTCCAAAAACGAAACCACGCCCATAAATTCTCACTATCGATTGTTTAAAAAAGAAGACACACATTAGATGATTTATGAAGTTTTTTATGTTTACTACTCTATCTTATCTTGTTGACTTTTTCAAAAGAAATGTTTTTTTCTACCAGTCCCATCTGGTTTGTATTATATTTTTCTTCAAAAACACATACATCAATGACACTAGCTTCTTACCCAAACTGATGCAAAAATGATCCAATATTAACCATGAAACCACAAATTATTGCACAATTTGCCTTCAAAGTTTGCCTGATGTTAGTTTTATGGTTTGTGCTATGGTAAACCCCCATTTCACCTTTCATTCGTCTAATTCTCTTCTTCTCTCTCAATATTTGTCACTTCCTGTCTATCATCCCTCTTATCATACCTCGTTCTCTCAGAAATCACAGACACAGTTGTGACTAAAGTTCCACTATTTATATTATCGAATTTTTAAAGGTTTGAGTTCATTTTGACCAAATGTTTCTACAATTGTTCAAAGTTTGGATAGGAGTTTTTTCCGTTTCCTTTCTTTTTCTTCCAATTTTGTTGGTGCTGGATTGGAGGAAAAGAGGAACCGCTGAGGGATTCAGTTCCGTCGTCTTGATCATTCCTATGATCATGTGAGTTTTTTAGTGATATTTAGAACATAAGGCTATTATGAAGATATTCTAAATACCTTAAAACCTGTACTAGAATTGCTCCGAACTTTAAATTTTGAGTTGATTTATCTCGATTCCTGTAAAA</canonical>
            <polymorphic>GGATTGATTAGCGTGGTGGGAAGGTAATCCGACCAGATGATGCCGCACTTGAAACGATTCTCATACTTTTTGAAAAAAAAATGCTGAACCTTCTGAACGCCAACTAGGACTTTGCCGGAAACTTCTGGTCGGAGGTTGGTCAGTTTCCGCATAAGACCGCTAAATCTGACCATGTCTCACCCATGGCCCACTGTTCAGCCGTTTTCTGGCAAGTTCCGACAGAACGTGGACAATATCGGTCCAAAAACGAAACCACGCCCATAAATTCTCACTATCGATTGTTTAAAAAAGAAGACACACATTAGATGATTTATGAAGTTTTTTATGTTTACTACTCTATCTTATCTTGTTGACTTTTTCAAAAGAAATGTTTTTTTCTACCAGTCCCATCTGGTTTGTATTATATTTTTCTTCAAAAACACATACATCAATGACACTAGCTTCTTACCCAAACTGATGCAAAAATGATCCAATATTAACCATGAAACCACAAATTATTKCACAATTTGCCTTCAAAGTTTGCCTGATGTTAGTTTTATGGTTTGTGCTATGGTAAACCCCCATTTCACCTTTCATTCGTCTAATTCTCTTCTTCTCTCTCAATATTTGTCACTTCCTGTCTATCATCCCTCTTATCATACCTCGTTCTCTCAGAAATCACAGACACAGTTGTGACTAAAGTTCCACTATTTATATTATCGAATTTTTAAAGGTTTGAGTTCATTTTGACCAAATGTTTCTACAATTGTTCAAAGTTTGGATAGGAGTTTTTTCCGTTTCCTTTCTTTTTCTTCCAATTTTGTTGGTGCTGGATTGGAGGAAAAGAGGAACCGCTGAGGGATTCAGTTCCGTCGTCTTGATCATTCCTATGATCATGTGAGTTTTTTAGTGATATTTAGAACATAAGGCTATTATGAAGATATTCTAAATACCTTAAAACCTGTACTAGAATTGCTCCGAACTTTAAATTTTGAGTTGATTTATCTCGATTCCTGTAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCANNNNNTGC</site>
                <isoschizomers>
                    <enzyme>ApaBI</enzyme>
                    <enzyme>BstAPI</enzyme>
                </isoschizomers>
                <canonical_bands>507 493</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 459 41</canonical_bands>
                <polymorphic_bands>541 459</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTCAAAAACACATACATCA</pcr_primer_p1>
		<pcr_primer_p2>TCTGAGAGAACGAGGTATGATAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTCAAAAACACATACATCAATGACACTAGCTTCTTACCCAAACTGATGCAAAAATGATCCAATATTAACCATGAAACCACAAATTATTGCACAATTTGCCTTCAAAGTTTGCCTGATGTTAGTTTTATGGTTTGTGCTATGGTAAACCCCCATTTCACCTTTCATTCGTCTAATTCTCTTCTTCTCTCTCAATATTTGTCACTTCCTGTCTATCATCCCTCTTATCATACCTCGTTCTCTCAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTCAAAAACACATACATCAATGACACTAGCTTCTTACCCAAACTGATGCAAAAATGATCCAATATTAACCATGAAACCACAAATTATTKCACAATTTGCCTTCAAAGTTTGCCTGATGTTAGTTTTATGGTTTGTGCTATGGTAAACCCCCATTTCACCTTTCATTCGTCTAATTCTCTTCTTCTCTCTCAATATTTGTCACTTCCTGTCTATCATCCCTCTTATCATACCTCGTTCTCTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31272</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>371037</contig_pos>
        <strand>+</strand>
        <context>CACAATTTGC[C/T]TTCAAAGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATGATCCAATATTAACCATGAAACCACAAATTATTGCACAATTTGC</left_flank>
        <right_flank>TTCAAAGTTTGCCTGATGTTAGTTTTATGGTTTGTGCTATGGTAAACCCC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTGGTGGGAAGGTAATCCGACCAGATGATGCCGCACTTGAAACGATTCTCATACTTTTTGAAAAAAAAATGCTGAACCTTCTGAACGCCAACTAGGACTTTGCCGGAAACTTCTGGTCGGAGGTTGGTCAGTTTCCGCATAAGACCGCTAAATCTGACCATGTCTCACCCATGGCCCACTGTTCAGCCGTTTTCTGGCAAGTTCCGACAGAACGTGGACAATATCGGTCCAAAAACGAAACCACGCCCATAAATTCTCACTATCGATTGTTTAAAAAAGAAGACACACATTAGATGATTTATGAAGTTTTTTATGTTTACTACTCTATCTTATCTTGTTGACTTTTTCAAAAGAAATGTTTTTTTCTACCAGTCCCATCTGGTTTGTATTATATTTTTCTTCAAAAACACATACATCAATGACACTAGCTTCTTACCCAAACTGATGCAAAAATGATCCAATATTAACCATGAAACCACAAATTATTGCACAATTTGCCTTCAAAGTTTGCCTGATGTTAGTTTTATGGTTTGTGCTATGGTAAACCCCCATTTCACCTTTCATTCGTCTAATTCTCTTCTTCTCTCTCAATATTTGTCACTTCCTGTCTATCATCCCTCTTATCATACCTCGTTCTCTCAGAAATCACAGACACAGTTGTGACTAAAGTTCCACTATTTATATTATCGAATTTTTAAAGGTTTGAGTTCATTTTGACCAAATGTTTCTACAATTGTTCAAAGTTTGGATAGGAGTTTTTTCCGTTTCCTTTCTTTTTCTTCCAATTTTGTTGGTGCTGGATTGGAGGAAAAGAGGAACCGCTGAGGGATTCAGTTCCGTCGTCTTGATCATTCCTATGATCATGTGAGTTTTTTAGTGATATTTAGAACATAAGGCTATTATGAAGATATTCTAAATACCTTAAAACCTGTACTAGAATTGCTCCGAACTTTAAATTTTGAGTTGATTTATCTCGATTCCTGTAAAAGATAGAAAATT</canonical>
            <polymorphic>CGTGGTGGGAAGGTAATCCGACCAGATGATGCCGCACTTGAAACGATTCTCATACTTTTTGAAAAAAAAATGCTGAACCTTCTGAACGCCAACTAGGACTTTGCCGGAAACTTCTGGTCGGAGGTTGGTCAGTTTCCGCATAAGACCGCTAAATCTGACCATGTCTCACCCATGGCCCACTGTTCAGCCGTTTTCTGGCAAGTTCCGACAGAACGTGGACAATATCGGTCCAAAAACGAAACCACGCCCATAAATTCTCACTATCGATTGTTTAAAAAAGAAGACACACATTAGATGATTTATGAAGTTTTTTATGTTTACTACTCTATCTTATCTTGTTGACTTTTTCAAAAGAAATGTTTTTTTCTACCAGTCCCATCTGGTTTGTATTATATTTTTCTTCAAAAACACATACATCAATGACACTAGCTTCTTACCCAAACTGATGCAAAAATGATCCAATATTAACCATGAAACCACAAATTATTGCACAATTTGCYTTCAAAGTTTGCCTGATGTTAGTTTTATGGTTTGTGCTATGGTAAACCCCCATTTCACCTTTCATTCGTCTAATTCTCTTCTTCTCTCTCAATATTTGTCACTTCCTGTCTATCATCCCTCTTATCATACCTCGTTCTCTCAGAAATCACAGACACAGTTGTGACTAAAGTTCCACTATTTATATTATCGAATTTTTAAAGGTTTGAGTTCATTTTGACCAAATGTTTCTACAATTGTTCAAAGTTTGGATAGGAGTTTTTTCCGTTTCCTTTCTTTTTCTTCCAATTTTGTTGGTGCTGGATTGGAGGAAAAGAGGAACCGCTGAGGGATTCAGTTCCGTCGTCTTGATCATTCCTATGATCATGTGAGTTTTTTAGTGATATTTAGAACATAAGGCTATTATGAAGATATTCTAAATACCTTAAAACCTGTACTAGAATTGCTCCGAACTTTAAATTTTGAGTTGATTTATCTCGATTCCTGTAAAAGATAGAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTCAAAAACACATACATCA</pcr_primer_p1>
		<pcr_primer_p2>TCTGAGAGAACGAGGTATGATAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTCAAAAACACATACATCAATGACACTAGCTTCTTACCCAAACTGATGCAAAAATGATCCAATATTAACCATGAAACCACAAATTATTGCACAATTTGCCTTCAAAGTTTGCCTGATGTTAGTTTTATGGTTTGTGCTATGGTAAACCCCCATTTCACCTTTCATTCGTCTAATTCTCTTCTTCTCTCTCAATATTTGTCACTTCCTGTCTATCATCCCTCTTATCATACCTCGTTCTCTCAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTCAAAAACACATACATCAATGACACTAGCTTCTTACCCAAACTGATGCAAAAATGATCCAATATTAACCATGAAACCACAAATTATTGCACAATTTGCYTTCAAAGTTTGCCTGATGTTAGTTTTATGGTTTGTGCTATGGTAAACCCCCATTTCACCTTTCATTCGTCTAATTCTCTTCTTCTCTCTCAATATTTGTCACTTCCTGTCTATCATCCCTCTTATCATACCTCGTTCTCTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31273</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>371155</contig_pos>
        <strand>+</strand>
        <context>GTCTATCATC[C/T]CTCTTATCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCTAATTCTCTTCTTCTCTCTCAATATTTGTCACTTCCTGTCTATCATC</left_flank>
        <right_flank>CTCTTATCATACCTCGTTCTCTCAGAAATCACAGACACAGTTGTGACTAA</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGAGGTTGGTCAGTTTCCGCATAAGACCGCTAAATCTGACCATGTCTCACCCATGGCCCACTGTTCAGCCGTTTTCTGGCAAGTTCCGACAGAACGTGGACAATATCGGTCCAAAAACGAAACCACGCCCATAAATTCTCACTATCGATTGTTTAAAAAAGAAGACACACATTAGATGATTTATGAAGTTTTTTATGTTTACTACTCTATCTTATCTTGTTGACTTTTTCAAAAGAAATGTTTTTTTCTACCAGTCCCATCTGGTTTGTATTATATTTTTCTTCAAAAACACATACATCAATGACACTAGCTTCTTACCCAAACTGATGCAAAAATGATCCAATATTAACCATGAAACCACAAATTATTGCACAATTTGCCTTCAAAGTTTGCCTGATGTTAGTTTTATGGTTTGTGCTATGGTAAACCCCCATTTCACCTTTCATTCGTCTAATTCTCTTCTTCTCTCTCAATATTTGTCACTTCCTGTCTATCATCCCTCTTATCATACCTCGTTCTCTCAGAAATCACAGACACAGTTGTGACTAAAGTTCCACTATTTATATTATCGAATTTTTAAAGGTTTGAGTTCATTTTGACCAAATGTTTCTACAATTGTTCAAAGTTTGGATAGGAGTTTTTTCCGTTTCCTTTCTTTTTCTTCCAATTTTGTTGGTGCTGGATTGGAGGAAAAGAGGAACCGCTGAGGGATTCAGTTCCGTCGTCTTGATCATTCCTATGATCATGTGAGTTTTTTAGTGATATTTAGAACATAAGGCTATTATGAAGATATTCTAAATACCTTAAAACCTGTACTAGAATTGCTCCGAACTTTAAATTTTGAGTTGATTTATCTCGATTCCTGTAAAAGATAGAAAATTTTTGTCAACTGATAAAATGTTTTTCATAAAATTATCAAAAATTTATCAGTTGAAAAGTTTTTTTTGTATATCATTTGAAGGAACCGAGATAATTGAGATCCAATTTTACGGTGTTATC</canonical>
            <polymorphic>CGGAGGTTGGTCAGTTTCCGCATAAGACCGCTAAATCTGACCATGTCTCACCCATGGCCCACTGTTCAGCCGTTTTCTGGCAAGTTCCGACAGAACGTGGACAATATCGGTCCAAAAACGAAACCACGCCCATAAATTCTCACTATCGATTGTTTAAAAAAGAAGACACACATTAGATGATTTATGAAGTTTTTTATGTTTACTACTCTATCTTATCTTGTTGACTTTTTCAAAAGAAATGTTTTTTTCTACCAGTCCCATCTGGTTTGTATTATATTTTTCTTCAAAAACACATACATCAATGACACTAGCTTCTTACCCAAACTGATGCAAAAATGATCCAATATTAACCATGAAACCACAAATTATTGCACAATTTGCCTTCAAAGTTTGCCTGATGTTAGTTTTATGGTTTGTGCTATGGTAAACCCCCATTTCACCTTTCATTCGTCTAATTCTCTTCTTCTCTCTCAATATTTGTCACTTCCTGTCTATCATCYCTCTTATCATACCTCGTTCTCTCAGAAATCACAGACACAGTTGTGACTAAAGTTCCACTATTTATATTATCGAATTTTTAAAGGTTTGAGTTCATTTTGACCAAATGTTTCTACAATTGTTCAAAGTTTGGATAGGAGTTTTTTCCGTTTCCTTTCTTTTTCTTCCAATTTTGTTGGTGCTGGATTGGAGGAAAAGAGGAACCGCTGAGGGATTCAGTTCCGTCGTCTTGATCATTCCTATGATCATGTGAGTTTTTTAGTGATATTTAGAACATAAGGCTATTATGAAGATATTCTAAATACCTTAAAACCTGTACTAGAATTGCTCCGAACTTTAAATTTTGAGTTGATTTATCTCGATTCCTGTAAAAGATAGAAAATTTTTGTCAACTGATAAAATGTTTTTCATAAAATTATCAAAAATTTATCAGTTGAAAAGTTTTTTTTGTATATCATTTGAAGGAACCGAGATAATTGAGATCCAATTTTACGGTGTTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATTAACCATGAAACCACAAA</pcr_primer_p1>
		<pcr_primer_p2>TCAAACCTTTAAAAATTCGATAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATATTAACCATGAAACCACAAATTATTGCACAATTTGCCTTCAAAGTTTGCCTGATGTTAGTTTTATGGTTTGTGCTATGGTAAACCCCCATTTCACCTTTCATTCGTCTAATTCTCTTCTTCTCTCTCAATATTTGTCACTTCCTGTCTATCATCCCTCTTATCATACCTCGTTCTCTCAGAAATCACAGACACAGTTGTGACTAAAGTTCCACTATTTATATTATCGAATTTTTAAAGGTTTGA</canonical_amplicon>
		<polymorphic_amplicon>AATATTAACCATGAAACCACAAATTATTGCACAATTTGCCTTCAAAGTTTGCCTGATGTTAGTTTTATGGTTTGTGCTATGGTAAACCCCCATTTCACCTTTCATTCGTCTAATTCTCTTCTTCTCTCTCAATATTTGTCACTTCCTGTCTATCATCYCTCTTATCATACCTCGTTCTCTCAGAAATCACAGACACAGTTGTGACTAAAGTTCCACTATTTATATTATCGAATTTTTAAAGGTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31274</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>371801</contig_pos>
        <strand>+</strand>
        <context>ACATATCGGT[C/T]CTCAGTTGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGACCAACGACACCACTCAGATCCTAATCAACTCCATGAACATATCGGT</left_flank>
        <right_flank>CTCAGTTGTTACATTGCCGCTTACGCTTACTATCAACCTAAAAGGGTAAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTCCTTTCTTTTTCTTCCAATTTTGTTGGTGCTGGATTGGAGGAAAAGAGGAACCGCTGAGGGATTCAGTTCCGTCGTCTTGATCATTCCTATGATCATGTGAGTTTTTTAGTGATATTTAGAACATAAGGCTATTATGAAGATATTCTAAATACCTTAAAACCTGTACTAGAATTGCTCCGAACTTTAAATTTTGAGTTGATTTATCTCGATTCCTGTAAAAGATAGAAAATTTTTGTCAACTGATAAAATGTTTTTCATAAAATTATCAAAAATTTATCAGTTGAAAAGTTTTTTTTGTATATCATTTGAAGGAACCGAGATAATTGAGATCCAATTTTACGGTGTTATCTATTAGAGGTAATACGGTAGTCGCTTTCAAATTTTTTAACTTCTATAATATTTTATTGAACTTCCAGTCAAGCTTTCTGGCTCCGCCACGGTTGGATGACCAACGACACCACTCAGATCCTAATCAACTCCATGAACATATCGGTTCTCAGTTGTTACATTGCCGCTTACGCTTACTATCAACCTAAAAGGGTAAGCGTCATTATGATTTCTTCTAGACAACATATTATGTGATTTATGTTGTATGAAAACTGATAAGGCGAATTCACTTGACATCATTTTTTATTAATTTTAGAAGTTTCTGATTGGTCAACTAATTTCCGCTCTCCTCATCATCAAATGCGCTTTCCTGTACGTCGATTCACATGACTCGGAACATATGGAATCTGCCATGGGAACTATAGCAGCTGGAGCTCAGATACTTGGACTAGGGGGTAGAATTTATGAAATTGTGGGTCACTATTGGTTGGATAACAGTAAAAAATGAATGTTTCAGAGGCGAGCTATCAAAATGGGAACCACAGAATATATCCCAGCTGTTATGCAGTTTGCTGTTGCCGCTCTCATGGCTCAGTGGTTCATTTTTGGAATCGTTACAGGAAACAAATTTATTGTGGTAAGACTTTTTCAGAATTCCTCATAGTCAG</canonical>
            <polymorphic>GTTTCCTTTCTTTTTCTTCCAATTTTGTTGGTGCTGGATTGGAGGAAAAGAGGAACCGCTGAGGGATTCAGTTCCGTCGTCTTGATCATTCCTATGATCATGTGAGTTTTTTAGTGATATTTAGAACATAAGGCTATTATGAAGATATTCTAAATACCTTAAAACCTGTACTAGAATTGCTCCGAACTTTAAATTTTGAGTTGATTTATCTCGATTCCTGTAAAAGATAGAAAATTTTTGTCAACTGATAAAATGTTTTTCATAAAATTATCAAAAATTTATCAGTTGAAAAGTTTTTTTTGTATATCATTTGAAGGAACCGAGATAATTGAGATCCAATTTTACGGTGTTATCTATTAGAGGTAATACGGTAGTCGCTTTCAAATTTTTTAACTTCTATAATATTTTATTGAACTTCCAGTCAAGCTTTCTGGCTCCGCCACGGTTGGATGACCAACGACACCACTCAGATCCTAATCAACTCCATGAACATATCGGTYCTCAGTTGTTACATTGCCGCTTACGCTTACTATCAACCTAAAAGGGTAAGCGTCATTATGATTTCTTCTAGACAACATATTATGTGATTTATGTTGTATGAAAACTGATAAGGCGAATTCACTTGACATCATTTTTTATTAATTTTAGAAGTTTCTGATTGGTCAACTAATTTCCGCTCTCCTCATCATCAAATGCGCTTTCCTGTACGTCGATTCACATGACTCGGAACATATGGAATCTGCCATGGGAACTATAGCAGCTGGAGCTCAGATACTTGGACTAGGGGGTAGAATTTATGAAATTGTGGGTCACTATTGGTTGGATAACAGTAAAAAATGAATGTTTCAGAGGCGAGCTATCAAAATGGGAACCACAGAATATATCCCAGCTGTTATGCAGTTTGCTGTTGCCGCTCTCATGGCTCAGTGGTTCATTTTTGGAATCGTTACAGGAAACAAATTTATTGTGGTAAGACTTTTTCAGAATTCCTCATAGTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTATTGAACTTCCAGTCAAG</pcr_primer_p1>
		<pcr_primer_p2>TGACCAATCAGAAACTTCTAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>ATTTTATTGAACTTCCAGTCAAGCTTTCTGGCTCCGCCACGGTTGGATGACCAACGACACCACTCAGATCCTAATCAACTCCATGAACATATCGGTTCTCAGTTGTTACATTGCCGCTTACGCTTACTATCAACCTAAAAGGGTAAGCGTCATTATGATTTCTTCTAGACAACATATTATGTGATTTATGTTGTATGAAAACTGATAAGGCGAATTCACTTGACATCATTTTTTATTAATTTTAGAAGTTTCTGATTGGTCA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTATTGAACTTCCAGTCAAGCTTTCTGGCTCCGCCACGGTTGGATGACCAACGACACCACTCAGATCCTAATCAACTCCATGAACATATCGGTYCTCAGTTGTTACATTGCCGCTTACGCTTACTATCAACCTAAAAGGGTAAGCGTCATTATGATTTCTTCTAGACAACATATTATGTGATTTATGTTGTATGAAAACTGATAAGGCGAATTCACTTGACATCATTTTTTATTAATTTTAGAAGTTTCTGATTGGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31275</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>372117</contig_pos>
        <strand>+</strand>
        <context>TGGGTCACTA[C/T]TKGTTGGATA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTCAGATACTTGGACTAGGGGGTAGAATTTATGAAATTGTGGGTCACTA</left_flank>
        <right_flank>TGGTTGGATAACAGTAAAAAATGAATGTTTCAGAGGCGAGCTATCAAAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACCGAGATAATTGAGATCCAATTTTACGGTGTTATCTATTAGAGGTAATACGGTAGTCGCTTTCAAATTTTTTAACTTCTATAATATTTTATTGAACTTCCAGTCAAGCTTTCTGGCTCCGCCACGGTTGGATGACCAACGACACCACTCAGATCCTAATCAACTCCATGAACATATCGGTTCTCAGTTGTTACATTGCCGCTTACGCTTACTATCAACCTAAAAGGGTAAGCGTCATTATGATTTCTTCTAGACAACATATTATGTGATTTATGTTGTATGAAAACTGATAAGGCGAATTCACTTGACATCATTTTTTATTAATTTTAGAAGTTTCTGATTGGTCAACTAATTTCCGCTCTCCTCATCATCAAATGCGCTTTCCTGTACGTCGATTCACATGACTCGGAACATATGGAATCTGCCATGGGAACTATAGCAGCTGGAGCTCAGATACTTGGACTAGGGGGTAGAATTTATGAAATTGTGGGTCACTATTGGTTGGATAACAGTAAAAAATGAATGTTTCAGAGGCGAGCTATCAAAATGGGAACCACAGAATATATCCCAGCTGTTATGCAGTTTGCTGTTGCCGCTCTCATGGCTCAGTGGTTCATTTTTGGAATCGTTACAGGAAACAAATTTATTGTGGTAAGACTTTTTCAGAATTCCTCATAGTCAGAAAAATTCAATCTGAGTTCAGATCGCCAACATTGCCGGACTGATCACAAGTGCTGTCACGATAAACCTCTATTTCCGATATCCACCTCTGACATGGACGGTACCGATCTTCAACATTCCCCCACAAAATTCCAAAAAACAAGAATGATTCTCAATACTTCATTCCTTTTTAAAATCCAATAAATTATAGTAAGATCTAGTTAGCTTTAAGTTTCAGTTTCGCAGGAGTCCTCGCTGGCTTCTTCTTCATCGAACGTGGTGGAGGATGAGATGGAAGAGATGACGGAGGCTTTTCTGCCACCGACGGTGGAGTCTGA</canonical>
            <polymorphic>GAACCGAGATAATTGAGATCCAATTTTACGGTGTTATCTATTAGAGGTAATACGGTAGTCGCTTTCAAATTTTTTAACTTCTATAATATTTTATTGAACTTCCAGTCAAGCTTTCTGGCTCCGCCACGGTTGGATGACCAACGACACCACTCAGATCCTAATCAACTCCATGAACATATCGGTTCTCAGTTGTTACATTGCCGCTTACGCTTACTATCAACCTAAAAGGGTAAGCGTCATTATGATTTCTTCTAGACAACATATTATGTGATTTATGTTGTATGAAAACTGATAAGGCGAATTCACTTGACATCATTTTTTATTAATTTTAGAAGTTTCTGATTGGTCAACTAATTTCCGCTCTCCTCATCATCAAATGCGCTTTCCTGTACGTCGATTCACATGACTCGGAACATATGGAATCTGCCATGGGAACTATAGCAGCTGGAGCTCAGATACTTGGACTAGGGGGTAGAATTTATGAAATTGTGGGTCACTAYTGGTTGGATAACAGTAAAAAATGAATGTTTCAGAGGCGAGCTATCAAAATGGGAACCACAGAATATATCCCAGCTGTTATGCAGTTTGCTGTTGCCGCTCTCATGGCTCAGTGGTTCATTTTTGGAATCGTTACAGGAAACAAATTTATTGTGGTAAGACTTTTTCAGAATTCCTCATAGTCAGAAAAATTCAATCTGAGTTCAGATCGCCAACATTGCCGGACTGATCACAAGTGCTGTCACGATAAACCTCTATTTCCGATATCCACCTCTGACATGGACGGTACCGATCTTCAACATTCCCCCACAAAATTCCAAAAAACAAGAATGATTCTCAATACTTCATTCCTTTTTAAAATCCAATAAATTATAGTAAGATCTAGTTAGCTTTAAGTTTCAGTTTCGCAGGAGTCCTCGCTGGCTTCTTCTTCATCGAACGTGGTGGAGGATGAGATGGAAGAGATGACGGAGGCTTTTCTGCCACCGACGGTGGAGTCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAAGTTTCTGATTGGTCAACT</pcr_primer_p1>
		<pcr_primer_p2>TAACAGCTGGGATATATTCTGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGAAGTTTCTGATTGGTCAACTAATTTCCGCTCTCCTCATCATCAAATGCGCTTTCCTGTACGTCGATTCACATGACTCGGAACATATGGAATCTGCCATGGGAACTATAGCAGCTGGAGCTCAGATACTTGGACTAGGGGGTAGAATTTATGAAATTGTGGGTCACTATTGGTTGGATAACAGTAAAAAATGAATGTTTCAGAGGCGAGCTATCAAAATGGGAACCACAGAATATATCCCAGCTGTTA</canonical_amplicon>
		<polymorphic_amplicon>TAGAAGTTTCTGATTGGTCAACTAATTTCCGCTCTCCTCATCATCAAATGCGCTTTCCTGTACGTCGATTCACATGACTCGGAACATATGGAATCTGCCATGGGAACTATAGCAGCTGGAGCTCAGATACTTGGACTAGGGGGTAGAATTTATGAAATTGTGGGTCACTAYTGGTTGGATAACAGTAAAAAATGAATGTTTCAGAGGCGAGCTATCAAAATGGGAACCACAGAATATATCCCAGCTGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31276</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>372119</contig_pos>
        <strand>+</strand>
        <context>GGTCACTAYT[G/T]GTTGGATAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCAGATACTTGGACTAGGGGGTAGAATTTATGAAATTGTGGGTCACTATT</left_flank>
        <right_flank>GTTGGATAACAGTAAAAAATGAATGTTTCAGAGGCGAGCTATCAAAATGG</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCGAGATAATTGAGATCCAATTTTACGGTGTTATCTATTAGAGGTAATACGGTAGTCGCTTTCAAATTTTTTAACTTCTATAATATTTTATTGAACTTCCAGTCAAGCTTTCTGGCTCCGCCACGGTTGGATGACCAACGACACCACTCAGATCCTAATCAACTCCATGAACATATCGGTTCTCAGTTGTTACATTGCCGCTTACGCTTACTATCAACCTAAAAGGGTAAGCGTCATTATGATTTCTTCTAGACAACATATTATGTGATTTATGTTGTATGAAAACTGATAAGGCGAATTCACTTGACATCATTTTTTATTAATTTTAGAAGTTTCTGATTGGTCAACTAATTTCCGCTCTCCTCATCATCAAATGCGCTTTCCTGTACGTCGATTCACATGACTCGGAACATATGGAATCTGCCATGGGAACTATAGCAGCTGGAGCTCAGATACTTGGACTAGGGGGTAGAATTTATGAAATTGTGGGTCACTATTGGTTGGATAACAGTAAAAAATGAATGTTTCAGAGGCGAGCTATCAAAATGGGAACCACAGAATATATCCCAGCTGTTATGCAGTTTGCTGTTGCCGCTCTCATGGCTCAGTGGTTCATTTTTGGAATCGTTACAGGAAACAAATTTATTGTGGTAAGACTTTTTCAGAATTCCTCATAGTCAGAAAAATTCAATCTGAGTTCAGATCGCCAACATTGCCGGACTGATCACAAGTGCTGTCACGATAAACCTCTATTTCCGATATCCACCTCTGACATGGACGGTACCGATCTTCAACATTCCCCCACAAAATTCCAAAAAACAAGAATGATTCTCAATACTTCATTCCTTTTTAAAATCCAATAAATTATAGTAAGATCTAGTTAGCTTTAAGTTTCAGTTTCGCAGGAGTCCTCGCTGGCTTCTTCTTCATCGAACGTGGTGGAGGATGAGATGGAAGAGATGACGGAGGCTTTTCTGCCACCGACGGTGGAGTCTGATG</canonical>
            <polymorphic>ACCGAGATAATTGAGATCCAATTTTACGGTGTTATCTATTAGAGGTAATACGGTAGTCGCTTTCAAATTTTTTAACTTCTATAATATTTTATTGAACTTCCAGTCAAGCTTTCTGGCTCCGCCACGGTTGGATGACCAACGACACCACTCAGATCCTAATCAACTCCATGAACATATCGGTTCTCAGTTGTTACATTGCCGCTTACGCTTACTATCAACCTAAAAGGGTAAGCGTCATTATGATTTCTTCTAGACAACATATTATGTGATTTATGTTGTATGAAAACTGATAAGGCGAATTCACTTGACATCATTTTTTATTAATTTTAGAAGTTTCTGATTGGTCAACTAATTTCCGCTCTCCTCATCATCAAATGCGCTTTCCTGTACGTCGATTCACATGACTCGGAACATATGGAATCTGCCATGGGAACTATAGCAGCTGGAGCTCAGATACTTGGACTAGGGGGTAGAATTTATGAAATTGTGGGTCACTATTKGTTGGATAACAGTAAAAAATGAATGTTTCAGAGGCGAGCTATCAAAATGGGAACCACAGAATATATCCCAGCTGTTATGCAGTTTGCTGTTGCCGCTCTCATGGCTCAGTGGTTCATTTTTGGAATCGTTACAGGAAACAAATTTATTGTGGTAAGACTTTTTCAGAATTCCTCATAGTCAGAAAAATTCAATCTGAGTTCAGATCGCCAACATTGCCGGACTGATCACAAGTGCTGTCACGATAAACCTCTATTTCCGATATCCACCTCTGACATGGACGGTACCGATCTTCAACATTCCCCCACAAAATTCCAAAAAACAAGAATGATTCTCAATACTTCATTCCTTTTTAAAATCCAATAAATTATAGTAAGATCTAGTTAGCTTTAAGTTTCAGTTTCGCAGGAGTCCTCGCTGGCTTCTTCTTCATCGAACGTGGTGGAGGATGAGATGGAAGAGATGACGGAGGCTTTTCTGCCACCGACGGTGGAGTCTGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAAGTTTCTGATTGGTCAACT</pcr_primer_p1>
		<pcr_primer_p2>TAACAGCTGGGATATATTCTGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGAAGTTTCTGATTGGTCAACTAATTTCCGCTCTCCTCATCATCAAATGCGCTTTCCTGTACGTCGATTCACATGACTCGGAACATATGGAATCTGCCATGGGAACTATAGCAGCTGGAGCTCAGATACTTGGACTAGGGGGTAGAATTTATGAAATTGTGGGTCACTATTGGTTGGATAACAGTAAAAAATGAATGTTTCAGAGGCGAGCTATCAAAATGGGAACCACAGAATATATCCCAGCTGTTA</canonical_amplicon>
		<polymorphic_amplicon>TAGAAGTTTCTGATTGGTCAACTAATTTCCGCTCTCCTCATCATCAAATGCGCTTTCCTGTACGTCGATTCACATGACTCGGAACATATGGAATCTGCCATGGGAACTATAGCAGCTGGAGCTCAGATACTTGGACTAGGGGGTAGAATTTATGAAATTGTGGGTCACTATTKGTTGGATAACAGTAAAAAATGAATGTTTCAGAGGCGAGCTATCAAAATGGGAACCACAGAATATATCCCAGCTGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31277</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>372152</contig_pos>
        <strand>+</strand>
        <context>ATGTTTCAGA[A/G]KCGAGCTATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTGTGGGTCACTATTGGTTGGATAACAGTAAAAAATGAATGTTTCAGA</left_flank>
        <right_flank>GCGAGCTATCAAAATGGGAACCACAGAATATATCCCAGCTGTTATGCAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTATTAGAGGTAATACGGTAGTCGCTTTCAAATTTTTTAACTTCTATAATATTTTATTGAACTTCCAGTCAAGCTTTCTGGCTCCGCCACGGTTGGATGACCAACGACACCACTCAGATCCTAATCAACTCCATGAACATATCGGTTCTCAGTTGTTACATTGCCGCTTACGCTTACTATCAACCTAAAAGGGTAAGCGTCATTATGATTTCTTCTAGACAACATATTATGTGATTTATGTTGTATGAAAACTGATAAGGCGAATTCACTTGACATCATTTTTTATTAATTTTAGAAGTTTCTGATTGGTCAACTAATTTCCGCTCTCCTCATCATCAAATGCGCTTTCCTGTACGTCGATTCACATGACTCGGAACATATGGAATCTGCCATGGGAACTATAGCAGCTGGAGCTCAGATACTTGGACTAGGGGGTAGAATTTATGAAATTGTGGGTCACTATTGGTTGGATAACAGTAAAAAATGAATGTTTCAGAGGCGAGCTATCAAAATGGGAACCACAGAATATATCCCAGCTGTTATGCAGTTTGCTGTTGCCGCTCTCATGGCTCAGTGGTTCATTTTTGGAATCGTTACAGGAAACAAATTTATTGTGGTAAGACTTTTTCAGAATTCCTCATAGTCAGAAAAATTCAATCTGAGTTCAGATCGCCAACATTGCCGGACTGATCACAAGTGCTGTCACGATAAACCTCTATTTCCGATATCCACCTCTGACATGGACGGTACCGATCTTCAACATTCCCCCACAAAATTCCAAAAAACAAGAATGATTCTCAATACTTCATTCCTTTTTAAAATCCAATAAATTATAGTAAGATCTAGTTAGCTTTAAGTTTCAGTTTCGCAGGAGTCCTCGCTGGCTTCTTCTTCATCGAACGTGGTGGAGGATGAGATGGAAGAGATGACGGAGGCTTTTCTGCCACCGACGGTGGAGTCTGATGGCTCGCAGAACTTGTCGAGCTGGTCTTCGTGTT</canonical>
            <polymorphic>ATCTATTAGAGGTAATACGGTAGTCGCTTTCAAATTTTTTAACTTCTATAATATTTTATTGAACTTCCAGTCAAGCTTTCTGGCTCCGCCACGGTTGGATGACCAACGACACCACTCAGATCCTAATCAACTCCATGAACATATCGGTTCTCAGTTGTTACATTGCCGCTTACGCTTACTATCAACCTAAAAGGGTAAGCGTCATTATGATTTCTTCTAGACAACATATTATGTGATTTATGTTGTATGAAAACTGATAAGGCGAATTCACTTGACATCATTTTTTATTAATTTTAGAAGTTTCTGATTGGTCAACTAATTTCCGCTCTCCTCATCATCAAATGCGCTTTCCTGTACGTCGATTCACATGACTCGGAACATATGGAATCTGCCATGGGAACTATAGCAGCTGGAGCTCAGATACTTGGACTAGGGGGTAGAATTTATGAAATTGTGGGTCACTATTGGTTGGATAACAGTAAAAAATGAATGTTTCAGARGCGAGCTATCAAAATGGGAACCACAGAATATATCCCAGCTGTTATGCAGTTTGCTGTTGCCGCTCTCATGGCTCAGTGGTTCATTTTTGGAATCGTTACAGGAAACAAATTTATTGTGGTAAGACTTTTTCAGAATTCCTCATAGTCAGAAAAATTCAATCTGAGTTCAGATCGCCAACATTGCCGGACTGATCACAAGTGCTGTCACGATAAACCTCTATTTCCGATATCCACCTCTGACATGGACGGTACCGATCTTCAACATTCCCCCACAAAATTCCAAAAAACAAGAATGATTCTCAATACTTCATTCCTTTTTAAAATCCAATAAATTATAGTAAGATCTAGTTAGCTTTAAGTTTCAGTTTCGCAGGAGTCCTCGCTGGCTTCTTCTTCATCGAACGTGGTGGAGGATGAGATGGAAGAGATGACGGAGGCTTTTCTGCCACCGACGGTGGAGTCTGATGGCTCGCAGAACTTGTCGAGCTGGTCTTCGTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTTGGACTAGGGGGTAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TCTGAACTCAGATTGAATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACTTGGACTAGGGGGTAGAATTTATGAAATTGTGGGTCACTATTGGTTGGATAACAGTAAAAAATGAATGTTTCAGAGGCGAGCTATCAAAATGGGAACCACAGAATATATCCCAGCTGTTATGCAGTTTGCTGTTGCCGCTCTCATGGCTCAGTGGTTCATTTTTGGAATCGTTACAGGAAACAAATTTATTGTGGTAAGACTTTTTCAGAATTCCTCATAGTCAGAAAAATTCAATCTGAGTTCAGA</canonical_amplicon>
		<polymorphic_amplicon>TACTTGGACTAGGGGGTAGAATTTATGAAATTGTGGGTCACTATTGGTTGGATAACAGTAAAAAATGAATGTTTCAGARGCGAGCTATCAAAATGGGAACCACAGAATATATCCCAGCTGTTATGCAGTTTGCTGTTGCCGCTCTCATGGCTCAGTGGTTCATTTTTGGAATCGTTACAGGAAACAAATTTATTGTGGTAAGACTTTTTCAGAATTCCTCATAGTCAGAAAAATTCAATCTGAGTTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31278</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>372153</contig_pos>
        <strand>+</strand>
        <context>TGTTTCAGAR[G/T]CGAGCTATCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTGTGGGTCACTATTGGTTGGATAACAGTAAAAAATGAATGTTTCAGAG</left_flank>
        <right_flank>CGAGCTATCAAAATGGGAACCACAGAATATATCCCAGCTGTTATGCAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTATTAGAGGTAATACGGTAGTCGCTTTCAAATTTTTTAACTTCTATAATATTTTATTGAACTTCCAGTCAAGCTTTCTGGCTCCGCCACGGTTGGATGACCAACGACACCACTCAGATCCTAATCAACTCCATGAACATATCGGTTCTCAGTTGTTACATTGCCGCTTACGCTTACTATCAACCTAAAAGGGTAAGCGTCATTATGATTTCTTCTAGACAACATATTATGTGATTTATGTTGTATGAAAACTGATAAGGCGAATTCACTTGACATCATTTTTTATTAATTTTAGAAGTTTCTGATTGGTCAACTAATTTCCGCTCTCCTCATCATCAAATGCGCTTTCCTGTACGTCGATTCACATGACTCGGAACATATGGAATCTGCCATGGGAACTATAGCAGCTGGAGCTCAGATACTTGGACTAGGGGGTAGAATTTATGAAATTGTGGGTCACTATTGGTTGGATAACAGTAAAAAATGAATGTTTCAGAGGCGAGCTATCAAAATGGGAACCACAGAATATATCCCAGCTGTTATGCAGTTTGCTGTTGCCGCTCTCATGGCTCAGTGGTTCATTTTTGGAATCGTTACAGGAAACAAATTTATTGTGGTAAGACTTTTTCAGAATTCCTCATAGTCAGAAAAATTCAATCTGAGTTCAGATCGCCAACATTGCCGGACTGATCACAAGTGCTGTCACGATAAACCTCTATTTCCGATATCCACCTCTGACATGGACGGTACCGATCTTCAACATTCCCCCACAAAATTCCAAAAAACAAGAATGATTCTCAATACTTCATTCCTTTTTAAAATCCAATAAATTATAGTAAGATCTAGTTAGCTTTAAGTTTCAGTTTCGCAGGAGTCCTCGCTGGCTTCTTCTTCATCGAACGTGGTGGAGGATGAGATGGAAGAGATGACGGAGGCTTTTCTGCCACCGACGGTGGAGTCTGATGGCTCGCAGAACTTGTCGAGCTGGTCTTCGTGTTC</canonical>
            <polymorphic>TCTATTAGAGGTAATACGGTAGTCGCTTTCAAATTTTTTAACTTCTATAATATTTTATTGAACTTCCAGTCAAGCTTTCTGGCTCCGCCACGGTTGGATGACCAACGACACCACTCAGATCCTAATCAACTCCATGAACATATCGGTTCTCAGTTGTTACATTGCCGCTTACGCTTACTATCAACCTAAAAGGGTAAGCGTCATTATGATTTCTTCTAGACAACATATTATGTGATTTATGTTGTATGAAAACTGATAAGGCGAATTCACTTGACATCATTTTTTATTAATTTTAGAAGTTTCTGATTGGTCAACTAATTTCCGCTCTCCTCATCATCAAATGCGCTTTCCTGTACGTCGATTCACATGACTCGGAACATATGGAATCTGCCATGGGAACTATAGCAGCTGGAGCTCAGATACTTGGACTAGGGGGTAGAATTTATGAAATTGTGGGTCACTATTGGTTGGATAACAGTAAAAAATGAATGTTTCAGAGKCGAGCTATCAAAATGGGAACCACAGAATATATCCCAGCTGTTATGCAGTTTGCTGTTGCCGCTCTCATGGCTCAGTGGTTCATTTTTGGAATCGTTACAGGAAACAAATTTATTGTGGTAAGACTTTTTCAGAATTCCTCATAGTCAGAAAAATTCAATCTGAGTTCAGATCGCCAACATTGCCGGACTGATCACAAGTGCTGTCACGATAAACCTCTATTTCCGATATCCACCTCTGACATGGACGGTACCGATCTTCAACATTCCCCCACAAAATTCCAAAAAACAAGAATGATTCTCAATACTTCATTCCTTTTTAAAATCCAATAAATTATAGTAAGATCTAGTTAGCTTTAAGTTTCAGTTTCGCAGGAGTCCTCGCTGGCTTCTTCTTCATCGAACGTGGTGGAGGATGAGATGGAAGAGATGACGGAGGCTTTTCTGCCACCGACGGTGGAGTCTGATGGCTCGCAGAACTTGTCGAGCTGGTCTTCGTGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 381 86 31</canonical_bands>
                <polymorphic_bands>883 86 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACTTGGACTAGGGGGTAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TCTGAACTCAGATTGAATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACTTGGACTAGGGGGTAGAATTTATGAAATTGTGGGTCACTATTGGTTGGATAACAGTAAAAAATGAATGTTTCAGAGGCGAGCTATCAAAATGGGAACCACAGAATATATCCCAGCTGTTATGCAGTTTGCTGTTGCCGCTCTCATGGCTCAGTGGTTCATTTTTGGAATCGTTACAGGAAACAAATTTATTGTGGTAAGACTTTTTCAGAATTCCTCATAGTCAGAAAAATTCAATCTGAGTTCAGA</canonical_amplicon>
		<polymorphic_amplicon>TACTTGGACTAGGGGGTAGAATTTATGAAATTGTGGGTCACTATTGGTTGGATAACAGTAAAAAATGAATGTTTCAGAGKCGAGCTATCAAAATGGGAACCACAGAATATATCCCAGCTGTTATGCAGTTTGCTGTTGCCGCTCTCATGGCTCAGTGGTTCATTTTTGGAATCGTTACAGGAAACAAATTTATTGTGGTAAGACTTTTTCAGAATTCCTCATAGTCAGAAAAATTCAATCTGAGTTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31279</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>377525</contig_pos>
        <strand>+</strand>
        <context>AAAAAACACT[A/T]ATAGATACGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAAATATGAATACCTAAAAAGAAGAGGAAGAGGATGAAGAAAAAACACT</left_flank>
        <right_flank>ATAGATACGCAGAAACACATAATACATAGGGAGAACGGCAAGAAGAGACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAAAATATTTGAAAGCTCCTACAAGTGAGAGACTGTTTAACTGCCAAGTTTGAGCCAATTTATCTCGATTCCTGTGCAAGATATTAAAAAGTTGCCAACTGATAAAATATCACTGATATTATGATGAACATTTTGTCAGTTGACTACTTTTTTGATATCATGAGTGACAATTGAGATAATTGCGCTCAAACTTGACAGTGTGGGTGCCCTCCTATTACAGGTTATACGGTGTCCCTACGAATGTTAGAGCAACTTCGAAAAACTATATATCGAATAAAAAAAACAAAATGATAAATGCTAACCATTCGACTCCTCCCAGATCATGTGTCGATTGAAATCTCACAATTTCAAATGGAATTTTGATAGAATGTGGTGCTGGTGGACGGTCTCTTGAATGGCTTTCATCCATGTTTGAGATTCTCTGAAAACTTTAGTCTTAAAATAACCTAAAATATGAATACCTAAAAAGAAGAGGAAGAGGATGAAGAAAAAACACTAATAGATACGCAGAAACACATAATACATAGGGAGAACGGCAAGAAGAGACCTCCCGATGCTCTCTATCTGCGTCTCGCTTTCACATGGAAAAAATGGAAGAGAAAAATAGTGTGAGAAGAGCGATAGACGCAGGAATTCTGGGACGAGAGTACCAAAAAGTGCATTGAAGATTGAGAAGCAAGGGCGAGGAAAAAACACGGTAGGAGAGAAAGAAGAAGAGGTGCCACCGCGCCGCCGTCGCCGGCAGAGGAGTTCCAAGACGACAGAGGATACTCGTGATGAGAGAAAAGAGAATAAGCTGCGTTTAGATGATGTAGACAAAGGAGAAATGTGTCGAGAATTGATTTTTTTGGAGAGGAAAGCTAGTAGGATAGAGAAGGACATCTGGAGCGAAATATGCTATGTTGAGGGGCAGCTGATTTGGCGATGGTTATGTCTATGGTACTATGGCGCACTGCAAACAATTGTGGTAATGAAAAAGGATATTGAAACACCTCAAA</canonical>
            <polymorphic>TTTAAAATATTTGAAAGCTCCTACAAGTGAGAGACTGTTTAACTGCCAAGTTTGAGCCAATTTATCTCGATTCCTGTGCAAGATATTAAAAAGTTGCCAACTGATAAAATATCACTGATATTATGATGAACATTTTGTCAGTTGACTACTTTTTTGATATCATGAGTGACAATTGAGATAATTGCGCTCAAACTTGACAGTGTGGGTGCCCTCCTATTACAGGTTATACGGTGTCCCTACGAATGTTAGAGCAACTTCGAAAAACTATATATCGAATAAAAAAAACAAAATGATAAATGCTAACCATTCGACTCCTCCCAGATCATGTGTCGATTGAAATCTCACAATTTCAAATGGAATTTTGATAGAATGTGGTGCTGGTGGACGGTCTCTTGAATGGCTTTCATCCATGTTTGAGATTCTCTGAAAACTTTAGTCTTAAAATAACCTAAAATATGAATACCTAAAAAGAAGAGGAAGAGGATGAAGAAAAAACACTWATAGATACGCAGAAACACATAATACATAGGGAGAACGGCAAGAAGAGACCTCCCGATGCTCTCTATCTGCGTCTCGCTTTCACATGGAAAAAATGGAAGAGAAAAATAGTGTGAGAAGAGCGATAGACGCAGGAATTCTGGGACGAGAGTACCAAAAAGTGCATTGAAGATTGAGAAGCAAGGGCGAGGAAAAAACACGGTAGGAGAGAAAGAAGAAGAGGTGCCACCGCGCCGCCGTCGCCGGCAGAGGAGTTCCAAGACGACAGAGGATACTCGTGATGAGAGAAAAGAGAATAAGCTGCGTTTAGATGATGTAGACAAAGGAGAAATGTGTCGAGAATTGATTTTTTTGGAGAGGAAAGCTAGTAGGATAGAGAAGGACATCTGGAGCGAAATATGCTATGTTGAGGGGCAGCTGATTTGGCGATGGTTATGTCTATGGTACTATGGCGCACTGCAAACAATTGTGGTAATGAAAAAGGATATTGAAACACCTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTGATAGAATGTGGTGCT</pcr_primer_p1>
		<pcr_primer_p2>CACACTATTTTTCTCTTCCATTT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AATTTTGATAGAATGTGGTGCTGGTGGACGGTCTCTTGAATGGCTTTCATCCATGTTTGAGATTCTCTGAAAACTTTAGTCTTAAAATAACCTAAAATATGAATACCTAAAAAGAAGAGGAAGAGGATGAAGAAAAAACACTAATAGATACGCAGAAACACATAATACATAGGGAGAACGGCAAGAAGAGACCTCCCGATGCTCTCTATCTGCGTCTCGCTTTCACATGGAAAAAATGGAAGAGAAAAATAGTGTG</canonical_amplicon>
		<polymorphic_amplicon>AATTTTGATAGAATGTGGTGCTGGTGGACGGTCTCTTGAATGGCTTTCATCCATGTTTGAGATTCTCTGAAAACTTTAGTCTTAAAATAACCTAAAATATGAATACCTAAAAAGAAGAGGAAGAGGATGAAGAAAAAACACTWATAGATACGCAGAAACACATAATACATAGGGAGAACGGCAAGAAGAGACCTCCCGATGCTCTCTATCTGCGTCTCGCTTTCACATGGAAAAAATGGAAGAGAAAAATAGTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31280</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>377655</contig_pos>
        <strand>+</strand>
        <context>GCGATAGACG[C/T]AGGAATTCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCACATGGAAAAAATGGAAGAGAAAAATAGTGTGAGAAGAGCGATAGACG</left_flank>
        <right_flank>AGGAATTCTGGGACGAGAGTACCAAAAAGTGCATTGAAGATTGAGAAGCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTTGTCAGTTGACTACTTTTTTGATATCATGAGTGACAATTGAGATAATTGCGCTCAAACTTGACAGTGTGGGTGCCCTCCTATTACAGGTTATACGGTGTCCCTACGAATGTTAGAGCAACTTCGAAAAACTATATATCGAATAAAAAAAACAAAATGATAAATGCTAACCATTCGACTCCTCCCAGATCATGTGTCGATTGAAATCTCACAATTTCAAATGGAATTTTGATAGAATGTGGTGCTGGTGGACGGTCTCTTGAATGGCTTTCATCCATGTTTGAGATTCTCTGAAAACTTTAGTCTTAAAATAACCTAAAATATGAATACCTAAAAAGAAGAGGAAGAGGATGAAGAAAAAACACTAATAGATACGCAGAAACACATAATACATAGGGAGAACGGCAAGAAGAGACCTCCCGATGCTCTCTATCTGCGTCTCGCTTTCACATGGAAAAAATGGAAGAGAAAAATAGTGTGAGAAGAGCGATAGACGCAGGAATTCTGGGACGAGAGTACCAAAAAGTGCATTGAAGATTGAGAAGCAAGGGCGAGGAAAAAACACGGTAGGAGAGAAAGAAGAAGAGGTGCCACCGCGCCGCCGTCGCCGGCAGAGGAGTTCCAAGACGACAGAGGATACTCGTGATGAGAGAAAAGAGAATAAGCTGCGTTTAGATGATGTAGACAAAGGAGAAATGTGTCGAGAATTGATTTTTTTGGAGAGGAAAGCTAGTAGGATAGAGAAGGACATCTGGAGCGAAATATGCTATGTTGAGGGGCAGCTGATTTGGCGATGGTTATGTCTATGGTACTATGGCGCACTGCAAACAATTGTGGTAATGAAAAAGGATATTGAAACACCTCAAACCTATTGGACAAACCTTTAAAGTTTCCAAAGAACTGAAAATTATAATCTTATTGCCCGGTATCGTACATGCTCAGAAAGTTGTTACCGTAAAAACTCTAATAGAACGTCACCCGGACCGTCCACTTTGAG</canonical>
            <polymorphic>CATTTTGTCAGTTGACTACTTTTTTGATATCATGAGTGACAATTGAGATAATTGCGCTCAAACTTGACAGTGTGGGTGCCCTCCTATTACAGGTTATACGGTGTCCCTACGAATGTTAGAGCAACTTCGAAAAACTATATATCGAATAAAAAAAACAAAATGATAAATGCTAACCATTCGACTCCTCCCAGATCATGTGTCGATTGAAATCTCACAATTTCAAATGGAATTTTGATAGAATGTGGTGCTGGTGGACGGTCTCTTGAATGGCTTTCATCCATGTTTGAGATTCTCTGAAAACTTTAGTCTTAAAATAACCTAAAATATGAATACCTAAAAAGAAGAGGAAGAGGATGAAGAAAAAACACTAATAGATACGCAGAAACACATAATACATAGGGAGAACGGCAAGAAGAGACCTCCCGATGCTCTCTATCTGCGTCTCGCTTTCACATGGAAAAAATGGAAGAGAAAAATAGTGTGAGAAGAGCGATAGACGYAGGAATTCTGGGACGAGAGTACCAAAAAGTGCATTGAAGATTGAGAAGCAAGGGCGAGGAAAAAACACGGTAGGAGAGAAAGAAGAAGAGGTGCCACCGCGCCGCCGTCGCCGGCAGAGGAGTTCCAAGACGACAGAGGATACTCGTGATGAGAGAAAAGAGAATAAGCTGCGTTTAGATGATGTAGACAAAGGAGAAATGTGTCGAGAATTGATTTTTTTGGAGAGGAAAGCTAGTAGGATAGAGAAGGACATCTGGAGCGAAATATGCTATGTTGAGGGGCAGCTGATTTGGCGATGGTTATGTCTATGGTACTATGGCGCACTGCAAACAATTGTGGTAATGAAAAAGGATATTGAAACACCTCAAACCTATTGGACAAACCTTTAAAGTTTCCAAAGAACTGAAAATTATAATCTTATTGCCCGGTATCGTACATGCTCAGAAAGTTGTTACCGTAAAAACTCTAATAGAACGTCACCCGGACCGTCCACTTTGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>496 209 159 111 25</canonical_bands>
                <polymorphic_bands>607 209 159 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACCTAAAAAGAAGAGGAAGAGG</pcr_primer_p1>
		<pcr_primer_p2>TCTTTCTCTCCTACCGTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TACCTAAAAAGAAGAGGAAGAGGATGAAGAAAAAACACTAATAGATACGCAGAAACACATAATACATAGGGAGAACGGCAAGAAGAGACCTCCCGATGCTCTCTATCTGCGTCTCGCTTTCACATGGAAAAAATGGAAGAGAAAAATAGTGTGAGAAGAGCGATAGACGCAGGAATTCTGGGACGAGAGTACCAAAAAGTGCATTGAAGATTGAGAAGCAAGGGCGAGGAAAAAACACGGTAGGAGAGAAAGA</canonical_amplicon>
		<polymorphic_amplicon>TACCTAAAAAGAAGAGGAAGAGGATGAAGAAAAAACACTAATAGATACGCAGAAACACATAATACATAGGGAGAACGGCAAGAAGAGACCTCCCGATGCTCTCTATCTGCGTCTCGCTTTCACATGGAAAAAATGGAAGAGAAAAATAGTGTGAGAAGAGCGATAGACGYAGGAATTCTGGGACGAGAGTACCAAAAAGTGCATTGAAGATTGAGAAGCAAGGGCGAGGAAAAAACACGGTAGGAGAGAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31281</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>377686</contig_pos>
        <strand>+</strand>
        <context>ACCAAAAAGT[G/T]CATTGAAGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGAGAAGAGCGATAGACGCAGGAATTCTGGGACGAGAGTACCAAAAAGT</left_flank>
        <right_flank>CATTGAAGATTGAGAAGCAAGGGCGAGGAAAAAACACGGTAGGAGAGAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAGTGACAATTGAGATAATTGCGCTCAAACTTGACAGTGTGGGTGCCCTCCTATTACAGGTTATACGGTGTCCCTACGAATGTTAGAGCAACTTCGAAAAACTATATATCGAATAAAAAAAACAAAATGATAAATGCTAACCATTCGACTCCTCCCAGATCATGTGTCGATTGAAATCTCACAATTTCAAATGGAATTTTGATAGAATGTGGTGCTGGTGGACGGTCTCTTGAATGGCTTTCATCCATGTTTGAGATTCTCTGAAAACTTTAGTCTTAAAATAACCTAAAATATGAATACCTAAAAAGAAGAGGAAGAGGATGAAGAAAAAACACTAATAGATACGCAGAAACACATAATACATAGGGAGAACGGCAAGAAGAGACCTCCCGATGCTCTCTATCTGCGTCTCGCTTTCACATGGAAAAAATGGAAGAGAAAAATAGTGTGAGAAGAGCGATAGACGCAGGAATTCTGGGACGAGAGTACCAAAAAGTGCATTGAAGATTGAGAAGCAAGGGCGAGGAAAAAACACGGTAGGAGAGAAAGAAGAAGAGGTGCCACCGCGCCGCCGTCGCCGGCAGAGGAGTTCCAAGACGACAGAGGATACTCGTGATGAGAGAAAAGAGAATAAGCTGCGTTTAGATGATGTAGACAAAGGAGAAATGTGTCGAGAATTGATTTTTTTGGAGAGGAAAGCTAGTAGGATAGAGAAGGACATCTGGAGCGAAATATGCTATGTTGAGGGGCAGCTGATTTGGCGATGGTTATGTCTATGGTACTATGGCGCACTGCAAACAATTGTGGTAATGAAAAAGGATATTGAAACACCTCAAACCTATTGGACAAACCTTTAAAGTTTCCAAAGAACTGAAAATTATAATCTTATTGCCCGGTATCGTACATGCTCAGAAAGTTGTTACCGTAAAAACTCTAATAGAACGTCACCCGGACCGTCCACTTTGAGCCTATATCTCCCTTCTTTCGAAAGATATCAA</canonical>
            <polymorphic>ATGAGTGACAATTGAGATAATTGCGCTCAAACTTGACAGTGTGGGTGCCCTCCTATTACAGGTTATACGGTGTCCCTACGAATGTTAGAGCAACTTCGAAAAACTATATATCGAATAAAAAAAACAAAATGATAAATGCTAACCATTCGACTCCTCCCAGATCATGTGTCGATTGAAATCTCACAATTTCAAATGGAATTTTGATAGAATGTGGTGCTGGTGGACGGTCTCTTGAATGGCTTTCATCCATGTTTGAGATTCTCTGAAAACTTTAGTCTTAAAATAACCTAAAATATGAATACCTAAAAAGAAGAGGAAGAGGATGAAGAAAAAACACTAATAGATACGCAGAAACACATAATACATAGGGAGAACGGCAAGAAGAGACCTCCCGATGCTCTCTATCTGCGTCTCGCTTTCACATGGAAAAAATGGAAGAGAAAAATAGTGTGAGAAGAGCGATAGACGCAGGAATTCTGGGACGAGAGTACCAAAAAGTKCATTGAAGATTGAGAAGCAAGGGCGAGGAAAAAACACGGTAGGAGAGAAAGAAGAAGAGGTGCCACCGCGCCGCCGTCGCCGGCAGAGGAGTTCCAAGACGACAGAGGATACTCGTGATGAGAGAAAAGAGAATAAGCTGCGTTTAGATGATGTAGACAAAGGAGAAATGTGTCGAGAATTGATTTTTTTGGAGAGGAAAGCTAGTAGGATAGAGAAGGACATCTGGAGCGAAATATGCTATGTTGAGGGGCAGCTGATTTGGCGATGGTTATGTCTATGGTACTATGGCGCACTGCAAACAATTGTGGTAATGAAAAAGGATATTGAAACACCTCAAACCTATTGGACAAACCTTTAAAGTTTCCAAAGAACTGAAAATTATAATCTTATTGCCCGGTATCGTACATGCTCAGAAAGTTGTTACCGTAAAAACTCTAATAGAACGTCACCCGGACCGTCCACTTTGAGCCTATATCTCCCTTCTTTCGAAAGATATCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 296 204</canonical_bands>
                <polymorphic_bands>796 204</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>121 117 114 96 65 55 52 48 38 36 34 30 29 26 25 24 20 15 15 13 7 6 4 3 3 2 2</canonical_bands>
                <polymorphic_bands>121 117 114 96 84 65 55 52 38 34 30 29 26 25 24 20 15 15 13 7 6 4 3 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGGAAGAGAAAAATAGTGTGA</pcr_primer_p1>
		<pcr_primer_p2>CACATTTCTCCTTTGTCTACATC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AATGGAAGAGAAAAATAGTGTGAGAAGAGCGATAGACGCAGGAATTCTGGGACGAGAGTACCAAAAAGTGCATTGAAGATTGAGAAGCAAGGGCGAGGAAAAAACACGGTAGGAGAGAAAGAAGAAGAGGTGCCACCGCGCCGCCGTCGCCGGCAGAGGAGTTCCAAGACGACAGAGGATACTCGTGATGAGAGAAAAGAGAATAAGCTGCGTTTAGATGATGTAGACAAAGGAGAAATGTG</canonical_amplicon>
		<polymorphic_amplicon>AATGGAAGAGAAAAATAGTGTGAGAAGAGCGATAGACGCAGGAATTCTGGGACGAGAGTACCAAAAAGTKCATTGAAGATTGAGAAGCAAGGGCGAGGAAAAAACACGGTAGGAGAGAAAGAAGAAGAGGTGCCACCGCGCCGCCGTCGCCGGCAGAGGAGTTCCAAGACGACAGAGGATACTCGTGATGAGAGAAAAGAGAATAAGCTGCGTTTAGATGATGTAGACAAAGGAGAAATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31282</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>377924</contig_pos>
        <strand>+</strand>
        <context>AGCGAAATAT[A/G]CTATGTTGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGGAGAGGAAAGCTAGTAGGATAGAGAAGGACATCTGGAGCGAAATAT</left_flank>
        <right_flank>CTATGTTGAGGGGCAGCTGATTTGGCGATGGTTATGTCTATGGTACTATG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTTTCATCCATGTTTGAGATTCTCTGAAAACTTTAGTCTTAAAATAACCTAAAATATGAATACCTAAAAAGAAGAGGAAGAGGATGAAGAAAAAACACTAATAGATACGCAGAAACACATAATACATAGGGAGAACGGCAAGAAGAGACCTCCCGATGCTCTCTATCTGCGTCTCGCTTTCACATGGAAAAAATGGAAGAGAAAAATAGTGTGAGAAGAGCGATAGACGCAGGAATTCTGGGACGAGAGTACCAAAAAGTGCATTGAAGATTGAGAAGCAAGGGCGAGGAAAAAACACGGTAGGAGAGAAAGAAGAAGAGGTGCCACCGCGCCGCCGTCGCCGGCAGAGGAGTTCCAAGACGACAGAGGATACTCGTGATGAGAGAAAAGAGAATAAGCTGCGTTTAGATGATGTAGACAAAGGAGAAATGTGTCGAGAATTGATTTTTTTGGAGAGGAAAGCTAGTAGGATAGAGAAGGACATCTGGAGCGAAATATGCTATGTTGAGGGGCAGCTGATTTGGCGATGGTTATGTCTATGGTACTATGGCGCACTGCAAACAATTGTGGTAATGAAAAAGGATATTGAAACACCTCAAACCTATTGGACAAACCTTTAAAGTTTCCAAAGAACTGAAAATTATAATCTTATTGCCCGGTATCGTACATGCTCAGAAAGTTGTTACCGTAAAAACTCTAATAGAACGTCACCCGGACCGTCCACTTTGAGCCTATATCTCCCTTCTTTCGAAAGATATCAAAAAGTTGTCAACTAACAAAATGTTTATCATGATATCACCAAATTTTTTTTTTAGTTAACCATTTTTTGATTTCTTCACAGAAAATGAGATACATGAGTTCAAATTTGAAGATTCGGGTGGCGTTCTATTAGAGTGTTTACGGTAAATAAAAACTTATGTAAATGGAAGTTGTAGATGTAAAATAGATTCTCAAACTTTCAAGATTCGAACTTCGGTTTCCAAAAAAAAAATAGAAATG</canonical>
            <polymorphic>GCTTTCATCCATGTTTGAGATTCTCTGAAAACTTTAGTCTTAAAATAACCTAAAATATGAATACCTAAAAAGAAGAGGAAGAGGATGAAGAAAAAACACTAATAGATACGCAGAAACACATAATACATAGGGAGAACGGCAAGAAGAGACCTCCCGATGCTCTCTATCTGCGTCTCGCTTTCACATGGAAAAAATGGAAGAGAAAAATAGTGTGAGAAGAGCGATAGACGCAGGAATTCTGGGACGAGAGTACCAAAAAGTGCATTGAAGATTGAGAAGCAAGGGCGAGGAAAAAACACGGTAGGAGAGAAAGAAGAAGAGGTGCCACCGCGCCGCCGTCGCCGGCAGAGGAGTTCCAAGACGACAGAGGATACTCGTGATGAGAGAAAAGAGAATAAGCTGCGTTTAGATGATGTAGACAAAGGAGAAATGTGTCGAGAATTGATTTTTTTGGAGAGGAAAGCTAGTAGGATAGAGAAGGACATCTGGAGCGAAATATRCTATGTTGAGGGGCAGCTGATTTGGCGATGGTTATGTCTATGGTACTATGGCGCACTGCAAACAATTGTGGTAATGAAAAAGGATATTGAAACACCTCAAACCTATTGGACAAACCTTTAAAGTTTCCAAAGAACTGAAAATTATAATCTTATTGCCCGGTATCGTACATGCTCAGAAAGTTGTTACCGTAAAAACTCTAATAGAACGTCACCCGGACCGTCCACTTTGAGCCTATATCTCCCTTCTTTCGAAAGATATCAAAAAGTTGTCAACTAACAAAATGTTTATCATGATATCACCAAATTTTTTTTTTAGTTAACCATTTTTTGATTTCTTCACAGAAAATGAGATACATGAGTTCAAATTTGAAGATTCGGGTGGCGTTCTATTAGAGTGTTTACGGTAAATAAAAACTTATGTAAATGGAAGTTGTAGATGTAAAATAGATTCTCAAACTTTCAAGATTCGAACTTCGGTTTCCAAAAAAAAAATAGAAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>478 227 159 111 25</canonical_bands>
                <polymorphic_bands>478 227 184 111</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATAAGCTGCGTTTAGATGAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAGTTCTTTGGAAACTTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAATAAGCTGCGTTTAGATGATGTAGACAAAGGAGAAATGTGTCGAGAATTGATTTTTTTGGAGAGGAAAGCTAGTAGGATAGAGAAGGACATCTGGAGCGAAATATGCTATGTTGAGGGGCAGCTGATTTGGCGATGGTTATGTCTATGGTACTATGGCGCACTGCAAACAATTGTGGTAATGAAAAAGGATATTGAAACACCTCAAACCTATTGGACAAACCTTTAAAGTTTCCAAAGAACTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAATAAGCTGCGTTTAGATGATGTAGACAAAGGAGAAATGTGTCGAGAATTGATTTTTTTGGAGAGGAAAGCTAGTAGGATAGAGAAGGACATCTGGAGCGAAATATRCTATGTTGAGGGGCAGCTGATTTGGCGATGGTTATGTCTATGGTACTATGGCGCACTGCAAACAATTGTGGTAATGAAAAAGGATATTGAAACACCTCAAACCTATTGGACAAACCTTTAAAGTTTCCAAAGAACTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31283</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>378039</contig_pos>
        <strand>+</strand>
        <context>ATTGGACAAA[C/T]CTTTAAAGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGTGGTAATGAAAAAGGATATTGAAACACCTCAAACCTATTGGACAAA</left_flank>
        <right_flank>CTTTAAAGTTTCCAAAGAACTGAAAATTATAATCTTATTGCCCGGTATCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACATAATACATAGGGAGAACGGCAAGAAGAGACCTCCCGATGCTCTCTATCTGCGTCTCGCTTTCACATGGAAAAAATGGAAGAGAAAAATAGTGTGAGAAGAGCGATAGACGCAGGAATTCTGGGACGAGAGTACCAAAAAGTGCATTGAAGATTGAGAAGCAAGGGCGAGGAAAAAACACGGTAGGAGAGAAAGAAGAAGAGGTGCCACCGCGCCGCCGTCGCCGGCAGAGGAGTTCCAAGACGACAGAGGATACTCGTGATGAGAGAAAAGAGAATAAGCTGCGTTTAGATGATGTAGACAAAGGAGAAATGTGTCGAGAATTGATTTTTTTGGAGAGGAAAGCTAGTAGGATAGAGAAGGACATCTGGAGCGAAATATGCTATGTTGAGGGGCAGCTGATTTGGCGATGGTTATGTCTATGGTACTATGGCGCACTGCAAACAATTGTGGTAATGAAAAAGGATATTGAAACACCTCAAACCTATTGGACAAACCTTTAAAGTTTCCAAAGAACTGAAAATTATAATCTTATTGCCCGGTATCGTACATGCTCAGAAAGTTGTTACCGTAAAAACTCTAATAGAACGTCACCCGGACCGTCCACTTTGAGCCTATATCTCCCTTCTTTCGAAAGATATCAAAAAGTTGTCAACTAACAAAATGTTTATCATGATATCACCAAATTTTTTTTTTAGTTAACCATTTTTTGATTTCTTCACAGAAAATGAGATACATGAGTTCAAATTTGAAGATTCGGGTGGCGTTCTATTAGAGTGTTTACGGTAAATAAAAACTTATGTAAATGGAAGTTGTAGATGTAAAATAGATTCTCAAACTTTCAAGATTCGAACTTCGGTTTCCAAAAAAAAAATAGAAATGAATGTGTTTTGATTCACTACTCGCTTCTATGCTTCTATCTCTTTCTGCCTCCTTGCTCCCACTTCTTATAATAATGCCCTTCTTCAAATTCTTAATATCACCTAGGCAACCTCTT</canonical>
            <polymorphic>ACACATAATACATAGGGAGAACGGCAAGAAGAGACCTCCCGATGCTCTCTATCTGCGTCTCGCTTTCACATGGAAAAAATGGAAGAGAAAAATAGTGTGAGAAGAGCGATAGACGCAGGAATTCTGGGACGAGAGTACCAAAAAGTGCATTGAAGATTGAGAAGCAAGGGCGAGGAAAAAACACGGTAGGAGAGAAAGAAGAAGAGGTGCCACCGCGCCGCCGTCGCCGGCAGAGGAGTTCCAAGACGACAGAGGATACTCGTGATGAGAGAAAAGAGAATAAGCTGCGTTTAGATGATGTAGACAAAGGAGAAATGTGTCGAGAATTGATTTTTTTGGAGAGGAAAGCTAGTAGGATAGAGAAGGACATCTGGAGCGAAATATGCTATGTTGAGGGGCAGCTGATTTGGCGATGGTTATGTCTATGGTACTATGGCGCACTGCAAACAATTGTGGTAATGAAAAAGGATATTGAAACACCTCAAACCTATTGGACAAAYCTTTAAAGTTTCCAAAGAACTGAAAATTATAATCTTATTGCCCGGTATCGTACATGCTCAGAAAGTTGTTACCGTAAAAACTCTAATAGAACGTCACCCGGACCGTCCACTTTGAGCCTATATCTCCCTTCTTTCGAAAGATATCAAAAAGTTGTCAACTAACAAAATGTTTATCATGATATCACCAAATTTTTTTTTTAGTTAACCATTTTTTGATTTCTTCACAGAAAATGAGATACATGAGTTCAAATTTGAAGATTCGGGTGGCGTTCTATTAGAGTGTTTACGGTAAATAAAAACTTATGTAAATGGAAGTTGTAGATGTAAAATAGATTCTCAAACTTTCAAGATTCGAACTTCGGTTTCCAAAAAAAAAATAGAAATGAATGTGTTTTGATTCACTACTCGCTTCTATGCTTCTATCTCTTTCTGCCTCCTTGCTCCCACTTCTTATAATAATGCCCTTCTTCAAATTCTTAATATCACCTAGGCAACCTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTGTCGAGAATTGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTGAGCATGTACGATACC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATGTGTCGAGAATTGATTTTTTTGGAGAGGAAAGCTAGTAGGATAGAGAAGGACATCTGGAGCGAAATATGCTATGTTGAGGGGCAGCTGATTTGGCGATGGTTATGTCTATGGTACTATGGCGCACTGCAAACAATTGTGGTAATGAAAAAGGATATTGAAACACCTCAAACCTATTGGACAAACCTTTAAAGTTTCCAAAGAACTGAAAATTATAATCTTATTGCCCGGTATCGTACATGCTCAGAAA</canonical_amplicon>
		<polymorphic_amplicon>AATGTGTCGAGAATTGATTTTTTTGGAGAGGAAAGCTAGTAGGATAGAGAAGGACATCTGGAGCGAAATATGCTATGTTGAGGGGCAGCTGATTTGGCGATGGTTATGTCTATGGTACTATGGCGCACTGCAAACAATTGTGGTAATGAAAAAGGATATTGAAACACCTCAAACCTATTGGACAAAYCTTTAAAGTTTCCAAAGAACTGAAAATTATAATCTTATTGCCCGGTATCGTACATGCTCAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31284</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>401830</contig_pos>
        <strand></strand>
        <context>cggctcctgt[A/G]agagatatca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACTGTTATAGAAGGACCCTTGAGCTGAGCTCAATTATCTCGGCTCCTGT</left_flank>
        <right_flank>AGAGATATCAAAAACGTATCAACTGATAAAATGTTTGTGGCATTATGATA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGGAAGCATAAAATTATGTTGCGTGGGAAATCTCAAATTTTCGAAAAGTCATTTTTAGCATCAGGCGACCATGGCCTCATTACGACACCTGAGTCAGTGTTCCAATTGGTTGAGCTTACATTTACATCATTATTTGGGCCTAATGAGAATCAGAAGATATATGGTCAGAAGATCATAAAACGTCAATGAGAGCTTCGTGACTTGATGGGTTACTGTAGATGATGTAACAAACAACCGGACGGCAGATACCTAGACAAATGTTGAGGACGCTCCTATCCTATAGCTGAGCAATATCTTTTAAGATCTTATCAGCTGAAAAATAGCTCCGGATTCTTTTTTCTGTCACAAAAATACTTCAGTAACTCGGTATTACACACTTTTTACGATTGCAACAACCAACGAAACTTGTAAACAAAAAAAGGGGATAGAACTACAATTCGCCGTAAAAACTGTTATAGAAGGACCCTTGAGCTGAGCTCAATTATCTCGGCTCCTGTAAGAGATATCAAAAACGTATCAACTGATAAAATGTTTGTGGCATTATGATAAGCAATTTATCAGTTGACAACTTTTTCTATCTTTTAAAGGAGCCCAGATAATTGAGCTCAAAATTGACGTGGGCATATATTCGAGGAAATACGGTATGTGACATTTGTTCTACCGTCCTCCTAGAGATCTTGATTTATCAGTTGATGCTGAACCGATTGCGCTGTGATCTATCAATTCAACGATCATCCAAATGCACTTTCCAAAAAACTATCTCAAAACATTAAATAGAACTGCTTCCATAGATCTTGGATCTCAATGGATCTCAATGTTTCATTGATCCTCCTGCCCTTTTTGTAGCTTATGCTCAGATCATCACCAACATGCCCACGAGATTGAAATCAGAAACCGTAGAATCTCCATATTTTCTATACCACCTCCCTCCTCTTCACCTTCTACATCATAGAGCTTTCATCTATCGCCCCGCCCCTTCCTTCTCTGTCGTTTCCTCC</canonical>
            <polymorphic>CTAGGAAGCATAAAATTATGTTGCGTGGGAAATCTCAAATTTTCGAAAAGTCATTTTTAGCATCAGGCGACCATGGCCTCATTACGACACCTGAGTCAGTGTTCCAATTGGTTGAGCTTACATTTACATCATTATTTGGGCCTAATGAGAATCAGAAGATATATGGTCAGAAGATCATAAAACGTCAATGAGAGCTTCGTGACTTGATGGGTTACTGTAGATGATGTAACAAACAACCGGACGGCAGATACCTAGACAAATGTTGAGGACGCTCCTATCCTATAGCTGAGCAATATCTTTTAAGATCTTATCAGCTGAAAAATAGCTCCGGATTCTTTTTTCTGTCACAAAAATACTTCAGTAACTCGGTATTACACACTTTTTACGATTGCAACAACCAACGAAACTTGTAAACAAAAAAAGGGGATAGAACTACAATTCGCCGTAAAAACTGTTATAGAAGGACCCTTGAGCTGAGCTCAATTATCTCGGCTCCTGTRAGAGATATCAAAAACGTATCAACTGATAAAATGTTTGTGGCATTATGATAAGCAATTTATCAGTTGACAACTTTTTCTATCTTTTAAAGGAGCCCAGATAATTGAGCTCAAAATTGACGTGGGCATATATTCGAGGAAATACGGTATGTGACATTTGTTCTACCGTCCTCCTAGAGATCTTGATTTATCAGTTGATGCTGAACCGATTGCGCTGTGATCTATCAATTCAACGATCATCCAAATGCACTTTCCAAAAAACTATCTCAAAACATTAAATAGAACTGCTTCCATAGATCTTGGATCTCAATGGATCTCAATGTTTCATTGATCCTCCTGCCCTTTTTGTAGCTTATGCTCAGATCATCACCAACATGCCCACGAGATTGAAATCAGAAACCGTAGAATCTCCATATTTTCTATACCACCTCCCTCCTCTTCACCTTCTACATCATAGAGCTTTCATCTATCGCCCCGCCCCTTCCTTCTCTGTCGTTTCCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACGAAACTTGTAAACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACATACCGTATTTCCTCGAATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAACGAAACTTGTAAACAAAAAAAGGGGATAGAACTACAATTCGCCGTAAAAACTGTTATAGAAGGACCCTTGAGCTGAGCTCAATTATCTCGGCTCCTGTAAGAGATATCAAAAACGTATCAACTGATAAAATGTTTGTGGCATTATGATAAGCAATTTATCAGTTGACAACTTTTTCTATCTTTTAAAGGAGCCCAGATAATTGAGCTCAAAATTGACGTGGGCATATATTCGAGGAAATACGGTATGT</canonical_amplicon>
		<polymorphic_amplicon>CAACGAAACTTGTAAACAAAAAAAGGGGATAGAACTACAATTCGCCGTAAAAACTGTTATAGAAGGACCCTTGAGCTGAGCTCAATTATCTCGGCTCCTGTRAGAGATATCAAAAACGTATCAACTGATAAAATGTTTGTGGCATTATGATAAGCAATTTATCAGTTGACAACTTTTTCTATCTTTTAAAGGAGCCCAGATAATTGAGCTCAAAATTGACGTGGGCATATATTCGAGGAAATACGGTATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31285</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>401902</contig_pos>
        <strand></strand>
        <context>agttgacaac[T/A]ttttctatct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ACTGATAAAATGTTTGTGGCATTATGATAAGCAATTTATCAGTTGACAAC</left_flank>
        <right_flank>TTTTCTATCTTTTAAAGGAGCCCAGATAATTGAGCTCAAAATTGACGTGG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGCCTCATTACGACACCTGAGTCAGTGTTCCAATTGGTTGAGCTTACATTTACATCATTATTTGGGCCTAATGAGAATCAGAAGATATATGGTCAGAAGATCATAAAACGTCAATGAGAGCTTCGTGACTTGATGGGTTACTGTAGATGATGTAACAAACAACCGGACGGCAGATACCTAGACAAATGTTGAGGACGCTCCTATCCTATAGCTGAGCAATATCTTTTAAGATCTTATCAGCTGAAAAATAGCTCCGGATTCTTTTTTCTGTCACAAAAATACTTCAGTAACTCGGTATTACACACTTTTTACGATTGCAACAACCAACGAAACTTGTAAACAAAAAAAGGGGATAGAACTACAATTCGCCGTAAAAACTGTTATAGAAGGACCCTTGAGCTGAGCTCAATTATCTCGGCTCCTGTAAGAGATATCAAAAACGTATCAACTGATAAAATGTTTGTGGCATTATGATAAGCAATTTATCAGTTGACAACTTTTTCTATCTTTTAAAGGAGCCCAGATAATTGAGCTCAAAATTGACGTGGGCATATATTCGAGGAAATACGGTATGTGACATTTGTTCTACCGTCCTCCTAGAGATCTTGATTTATCAGTTGATGCTGAACCGATTGCGCTGTGATCTATCAATTCAACGATCATCCAAATGCACTTTCCAAAAAACTATCTCAAAACATTAAATAGAACTGCTTCCATAGATCTTGGATCTCAATGGATCTCAATGTTTCATTGATCCTCCTGCCCTTTTTGTAGCTTATGCTCAGATCATCACCAACATGCCCACGAGATTGAAATCAGAAACCGTAGAATCTCCATATTTTCTATACCACCTCCCTCCTCTTCACCTTCTACATCATAGAGCTTTCATCTATCGCCCCGCCCCTTCCTTCTCTGTCGTTTCCTCCGTCAAGAAGTGGAGACTCCGCCCATTTTTTGGTCTCTCTTTAAAAACACCGGTCTGAGCACTACTCTTCATT</canonical>
            <polymorphic>ATGGCCTCATTACGACACCTGAGTCAGTGTTCCAATTGGTTGAGCTTACATTTACATCATTATTTGGGCCTAATGAGAATCAGAAGATATATGGTCAGAAGATCATAAAACGTCAATGAGAGCTTCGTGACTTGATGGGTTACTGTAGATGATGTAACAAACAACCGGACGGCAGATACCTAGACAAATGTTGAGGACGCTCCTATCCTATAGCTGAGCAATATCTTTTAAGATCTTATCAGCTGAAAAATAGCTCCGGATTCTTTTTTCTGTCACAAAAATACTTCAGTAACTCGGTATTACACACTTTTTACGATTGCAACAACCAACGAAACTTGTAAACAAAAAAAGGGGATAGAACTACAATTCGCCGTAAAAACTGTTATAGAAGGACCCTTGAGCTGAGCTCAATTATCTCGGCTCCTGTAAGAGATATCAAAAACGTATCAACTGATAAAATGTTTGTGGCATTATGATAAGCAATTTATCAGTTGACAACWTTTTCTATCTTTTAAAGGAGCCCAGATAATTGAGCTCAAAATTGACGTGGGCATATATTCGAGGAAATACGGTATGTGACATTTGTTCTACCGTCCTCCTAGAGATCTTGATTTATCAGTTGATGCTGAACCGATTGCGCTGTGATCTATCAATTCAACGATCATCCAAATGCACTTTCCAAAAAACTATCTCAAAACATTAAATAGAACTGCTTCCATAGATCTTGGATCTCAATGGATCTCAATGTTTCATTGATCCTCCTGCCCTTTTTGTAGCTTATGCTCAGATCATCACCAACATGCCCACGAGATTGAAATCAGAAACCGTAGAATCTCCATATTTTCTATACCACCTCCCTCCTCTTCACCTTCTACATCATAGAGCTTTCATCTATCGCCCCGCCCCTTCCTTCTCTGTCGTTTCCTCCGTCAAGAAGTGGAGACTCCGCCCATTTTTTGGTCTCTCTTTAAAAACACCGGTCTGAGCACTACTCTTCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACGAAACTTGTAAACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACATACCGTATTTCCTCGAATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAACGAAACTTGTAAACAAAAAAAGGGGATAGAACTACAATTCGCCGTAAAAACTGTTATAGAAGGACCCTTGAGCTGAGCTCAATTATCTCGGCTCCTGTAAGAGATATCAAAAACGTATCAACTGATAAAATGTTTGTGGCATTATGATAAGCAATTTATCAGTTGACAACTTTTTCTATCTTTTAAAGGAGCCCAGATAATTGAGCTCAAAATTGACGTGGGCATATATTCGAGGAAATACGGTATGT</canonical_amplicon>
		<polymorphic_amplicon>CAACGAAACTTGTAAACAAAAAAAGGGGATAGAACTACAATTCGCCGTAAAAACTGTTATAGAAGGACCCTTGAGCTGAGCTCAATTATCTCGGCTCCTGTAAGAGATATCAAAAACGTATCAACTGATAAAATGTTTGTGGCATTATGATAAGCAATTTATCAGTTGACAACWTTTTCTATCTTTTAAAGGAGCCCAGATAATTGAGCTCAAAATTGACGTGGGCATATATTCGAGGAAATACGGTATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31286</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>401957</contig_pos>
        <strand>+</strand>
        <context>aCGTGGGCAT[A/C]TATTCGAGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTATCTTTTAAAGGAGCCCAGATAATTGAGCTCAAAATTGACGTGGGCAT</left_flank>
        <right_flank>TATTCGAGGAAATACGGTATGTGACATTTGTTCTACCGTCCTCCTAGAGA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCATTATTTGGGCCTAATGAGAATCAGAAGATATATGGTCAGAAGATCATAAAACGTCAATGAGAGCTTCGTGACTTGATGGGTTACTGTAGATGATGTAACAAACAACCGGACGGCAGATACCTAGACAAATGTTGAGGACGCTCCTATCCTATAGCTGAGCAATATCTTTTAAGATCTTATCAGCTGAAAAATAGCTCCGGATTCTTTTTTCTGTCACAAAAATACTTCAGTAACTCGGTATTACACACTTTTTACGATTGCAACAACCAACGAAACTTGTAAACAAAAAAAGGGGATAGAACTACAATTCGCCGTAAAAACTGTTATAGAAGGACCCTTGAGCTGAGCTCAATTATCTCGGCTCCTGTAAGAGATATCAAAAACGTATCAACTGATAAAATGTTTGTGGCATTATGATAAGCAATTTATCAGTTGACAACTTTTTCTATCTTTTAAAGGAGCCCAGATAATTGAGCTCAAAATTGACGTGGGCATATATTCGAGGAAATACGGTATGTGACATTTGTTCTACCGTCCTCCTAGAGATCTTGATTTATCAGTTGATGCTGAACCGATTGCGCTGTGATCTATCAATTCAACGATCATCCAAATGCACTTTCCAAAAAACTATCTCAAAACATTAAATAGAACTGCTTCCATAGATCTTGGATCTCAATGGATCTCAATGTTTCATTGATCCTCCTGCCCTTTTTGTAGCTTATGCTCAGATCATCACCAACATGCCCACGAGATTGAAATCAGAAACCGTAGAATCTCCATATTTTCTATACCACCTCCCTCCTCTTCACCTTCTACATCATAGAGCTTTCATCTATCGCCCCGCCCCTTCCTTCTCTGTCGTTTCCTCCGTCAAGAAGTGGAGACTCCGCCCATTTTTTGGTCTCTCTTTAAAAACACCGGTCTGAGCACTACTCTTCATTATCGTGAGCCCGTCCCCATGCTCTCCAAAACTGCTATTCTGGTGTCTTGCTTGGC</canonical>
            <polymorphic>ATCATTATTTGGGCCTAATGAGAATCAGAAGATATATGGTCAGAAGATCATAAAACGTCAATGAGAGCTTCGTGACTTGATGGGTTACTGTAGATGATGTAACAAACAACCGGACGGCAGATACCTAGACAAATGTTGAGGACGCTCCTATCCTATAGCTGAGCAATATCTTTTAAGATCTTATCAGCTGAAAAATAGCTCCGGATTCTTTTTTCTGTCACAAAAATACTTCAGTAACTCGGTATTACACACTTTTTACGATTGCAACAACCAACGAAACTTGTAAACAAAAAAAGGGGATAGAACTACAATTCGCCGTAAAAACTGTTATAGAAGGACCCTTGAGCTGAGCTCAATTATCTCGGCTCCTGTAAGAGATATCAAAAACGTATCAACTGATAAAATGTTTGTGGCATTATGATAAGCAATTTATCAGTTGACAACTTTTTCTATCTTTTAAAGGAGCCCAGATAATTGAGCTCAAAATTGACGTGGGCATMTATTCGAGGAAATACGGTATGTGACATTTGTTCTACCGTCCTCCTAGAGATCTTGATTTATCAGTTGATGCTGAACCGATTGCGCTGTGATCTATCAATTCAACGATCATCCAAATGCACTTTCCAAAAAACTATCTCAAAACATTAAATAGAACTGCTTCCATAGATCTTGGATCTCAATGGATCTCAATGTTTCATTGATCCTCCTGCCCTTTTTGTAGCTTATGCTCAGATCATCACCAACATGCCCACGAGATTGAAATCAGAAACCGTAGAATCTCCATATTTTCTATACCACCTCCCTCCTCTTCACCTTCTACATCATAGAGCTTTCATCTATCGCCCCGCCCCTTCCTTCTCTGTCGTTTCCTCCGTCAAGAAGTGGAGACTCCGCCCATTTTTTGGTCTCTCTTTAAAAACACCGGTCTGAGCACTACTCTTCATTATCGTGAGCCCGTCCCCATGCTCTCCAAAACTGCTATTCTGGTGTCTTGCTTGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACGAAACTTGTAAACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGATCTCTAGGAGGACGGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>282</pcr_amplicon_size>
		<canonical_amplicon>CAACGAAACTTGTAAACAAAAAAAGGGGATAGAACTACAATTCGCCGTAAAAACTGTTATAGAAGGACCCTTGAGCTGAGCTCAATTATCTCGGCTCCTGTAAGAGATATCAAAAACGTATCAACTGATAAAATGTTTGTGGCATTATGATAAGCAATTTATCAGTTGACAACTTTTTCTATCTTTTAAAGGAGCCCAGATAATTGAGCTCAAAATTGACGTGGGCATATATTCGAGGAAATACGGTATGTGACATTTGTTCTACCGTCCTCCTAGAGATCT</canonical_amplicon>
		<polymorphic_amplicon>CAACGAAACTTGTAAACAAAAAAAGGGGATAGAACTACAATTCGCCGTAAAAACTGTTATAGAAGGACCCTTGAGCTGAGCTCAATTATCTCGGCTCCTGTAAGAGATATCAAAAACGTATCAACTGATAAAATGTTTGTGGCATTATGATAAGCAATTTATCAGTTGACAACTTTTTCTATCTTTTAAAGGAGCCCAGATAATTGAGCTCAAAATTGACGTGGGCATMTATTCGAGGAAATACGGTATGTGACATTTGTTCTACCGTCCTCCTAGAGATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31287</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>403377</contig_pos>
        <strand>+</strand>
        <context>TACACTACAG[C/T]ATACTCTACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGATCCGAGGAATTCAAACTTCTAGTTCTTGAAGACGACTACACTACAG</left_flank>
        <right_flank>ATACTCTACAGTATACTCCGAATCAATTACCCTATTGTAAAATCCTGAAC</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATGGCTGCAATATGCCAAAGGGATTCACCACCTTCTTGGACTTCAACAAGCTCCCAATGCCAGAGACCTTCTTCTAAATCTCCCCATACCGTCCCCTATGATACTCGTTTCCCAGTTCTCATGCTCTCTACAGTAATCTATCCCATTGAAAAGTTTTCCATTTCCCAATCGTTCTGATACATATACCGTGATACTAATGAAACACACTCGATTCGAATAAAGATGAGACTGTTAATGCAAAAATCTGGTTTTGTTTTCTATGGAACAAGTTGGTTTCGATTCTTCAGGAGCTCAGGATATCAGATCCGCTGCTCAGAGAATCTGGTTGTTTCAGATGAAGTCAGATAAGGAACTGTGCGGCTGGCTTAACCCGTTCATTTAAAGTGTTAGGATACTTCCTTTCAGGCTATTCAGCGTTTTCAGATTTTCTTCAGAAGCTCATCAGCTCAGATCCGAGGAATTCAAACTTCTAGTTCTTGAAGACGACTACACTACAGCATACTCTACAGTATACTCCGAATCAATTACCCTATTGTAAAATCCTGAACAATAGGCCATCAATTCCCGATGGTTCCATTTTTTCCGCGAAATCTTTGCATTGAATACCACCCTTCAACGTAGGTAAATCGCCTCTGATTCCTTCCATTCATACCCTCCCCTCTTCTCCACGAATAATCTTGGATTAATTGTCCTGTATTATAATCACACGGTCCATTCTTCTCCTTCTAATCCCCCACACTCTCACCATTGTCATCCCCAAAAAGTGGCACAAACAGGTGTGACGTTCCTTTGAGAAGCACTCGACGAATTCCATTATAGATGGATCTTCTTTTTCTTTTTCTGAGAGCTCTCGTCAGAAATTCGTCTTGGGTGGTCGAGAGCCAAAAAAGCAACAAAAAGAGGAAAAGTGAGTTCCCGCTGTGTGCGGCCAATGTCAGGGAGGCACAGAATGAGGTTAATCAAGAAGAAGAAGAAGCAATTATGGAAATTGCAAGAGG</canonical>
            <polymorphic>GGATGGCTGCAATATGCCAAAGGGATTCACCACCTTCTTGGACTTCAACAAGCTCCCAATGCCAGAGACCTTCTTCTAAATCTCCCCATACCGTCCCCTATGATACTCGTTTCCCAGTTCTCATGCTCTCTACAGTAATCTATCCCATTGAAAAGTTTTCCATTTCCCAATCGTTCTGATACATATACCGTGATACTAATGAAACACACTCGATTCGAATAAAGATGAGACTGTTAATGCAAAAATCTGGTTTTGTTTTCTATGGAACAAGTTGGTTTCGATTCTTCAGGAGCTCAGGATATCAGATCCGCTGCTCAGAGAATCTGGTTGTTTCAGATGAAGTCAGATAAGGAACTGTGCGGCTGGCTTAACCCGTTCATTTAAAGTGTTAGGATACTTCCTTTCAGGCTATTCAGCGTTTTCAGATTTTCTTCAGAAGCTCATCAGCTCAGATCCGAGGAATTCAAACTTCTAGTTCTTGAAGACGACTACACTACAGYATACTCTACAGTATACTCCGAATCAATTACCCTATTGTAAAATCCTGAACAATAGGCCATCAATTCCCGATGGTTCCATTTTTTCCGCGAAATCTTTGCATTGAATACCACCCTTCAACGTAGGTAAATCGCCTCTGATTCCTTCCATTCATACCCTCCCCTCTTCTCCACGAATAATCTTGGATTAATTGTCCTGTATTATAATCACACGGTCCATTCTTCTCCTTCTAATCCCCCACACTCTCACCATTGTCATCCCCAAAAAGTGGCACAAACAGGTGTGACGTTCCTTTGAGAAGCACTCGACGAATTCCATTATAGATGGATCTTCTTTTTCTTTTTCTGAGAGCTCTCGTCAGAAATTCGTCTTGGGTGGTCGAGAGCCAAAAAAGCAACAAAAAGAGGAAAAGTGAGTTCCCGCTGTGTGCGGCCAATGTCAGGGAGGCACAGAATGAGGTTAATCAAGAAGAAGAAGAAGCAATTATGGAAATTGCAAGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGGATACTTCCTTTCAGGCTAT</pcr_primer_p1>
		<pcr_primer_p2>AATCAGAGGCGATTTACCTAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAGGATACTTCCTTTCAGGCTATTCAGCGTTTTCAGATTTTCTTCAGAAGCTCATCAGCTCAGATCCGAGGAATTCAAACTTCTAGTTCTTGAAGACGACTACACTACAGCATACTCTACAGTATACTCCGAATCAATTACCCTATTGTAAAATCCTGAACAATAGGCCATCAATTCCCGATGGTTCCATTTTTTCCGCGAAATCTTTGCATTGAATACCACCCTTCAACGTAGGTAAATCGCCTCTGATT</canonical_amplicon>
		<polymorphic_amplicon>TAGGATACTTCCTTTCAGGCTATTCAGCGTTTTCAGATTTTCTTCAGAAGCTCATCAGCTCAGATCCGAGGAATTCAAACTTCTAGTTCTTGAAGACGACTACACTACAGYATACTCTACAGTATACTCCGAATCAATTACCCTATTGTAAAATCCTGAACAATAGGCCATCAATTCCCGATGGTTCCATTTTTTCCGCGAAATCTTTGCATTGAATACCACCCTTCAACGTAGGTAAATCGCCTCTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31288</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>406317</contig_pos>
        <strand>+</strand>
        <context>GTTAAGGATT[C/T]CAATTTTTGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATGATGTTCTTCATTCTCCGTTTATCGTTTCTGAGTCCGTTAAGGATT</left_flank>
        <right_flank>CAATTTTTGCAAAAAAGGCTAGGATTACTAGCTTCTGACGTGGTTACCAG</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTCTAATTTTGTGAAACTTACTCTAATGAGGCCAATTTTCACTAATTAGCTTCGTTAAATCAGGTAATTATGAAATCATTCTTACCCGAAATGGCGGAGAGTACGGCTGAAACATCTCACAAGCCATCACCATCAAATCTCTTGATGACTTCGGAGCAAACTTTGGCTCGATTTCCCGGGTAACCACTGATGAAGACGTTACTGAAAGTGCTCGTGGCACGACTTCAGATTTCAGGTCCCAGTCTAGATTGGCTCTTTTTAATCGGAGTGGAGATGATTTTTCTTCATCGAAACCTATACGACTCGCAGCGTTTCGATCGATATCATCACACCATTCCAGTGAAGCGCAAGATGAAGCCGCAATCGACATGTTGTCGGTTTCTCGGAGTACATACAGTCTGAAATTTTTTTCAATTCGATTCTTGAAAATACGTAAATGAATAATTTATGATGTTCTTCATTCTCCGTTTATCGTTTCTGAGTCCGTTAAGGATTCCAATTTTTGCAAAAAAGGCTAGGATTACTAGCTTCTGACGTGGTTACCAGGTGAGATTCTACATTGCAACCCACTGATCCTCCTTTTGATTCAACACAAATCTCTCCTTAATTTCCTGTGTCAATTCAAGGTAACCAAAACATGACGCAACAAAGGGATAAGAGAGGGGGGAGATCCGATTTTGCAGATTTTTGCAAGAGACTTTGTACCCGATTATAGTGGGTTTGATGGGTTTGGTATTTGGGAAAATTCAAAAGATACTGGGGATTGAAGACATTTTATAACAAAAATTGTCCTTTTTGAGGTTTACTCTAATTTGTTTCCAGATTCGTTTTTCAGATGGTTTAGGTACCAAATGATAGATCTCGACAGGGCGAATCACGTATATATCATTCGAGCCAGATCCCGGTCCGATAAAATGTCAAAAAATGTGTTTCAATGACAATTTTGGACCAATTCGACAAAAATCAGATTTATTGTCATTCAAGCACATTTTTCGA</canonical>
            <polymorphic>TTTTTTCTAATTTTGTGAAACTTACTCTAATGAGGCCAATTTTCACTAATTAGCTTCGTTAAATCAGGTAATTATGAAATCATTCTTACCCGAAATGGCGGAGAGTACGGCTGAAACATCTCACAAGCCATCACCATCAAATCTCTTGATGACTTCGGAGCAAACTTTGGCTCGATTTCCCGGGTAACCACTGATGAAGACGTTACTGAAAGTGCTCGTGGCACGACTTCAGATTTCAGGTCCCAGTCTAGATTGGCTCTTTTTAATCGGAGTGGAGATGATTTTTCTTCATCGAAACCTATACGACTCGCAGCGTTTCGATCGATATCATCACACCATTCCAGTGAAGCGCAAGATGAAGCCGCAATCGACATGTTGTCGGTTTCTCGGAGTACATACAGTCTGAAATTTTTTTCAATTCGATTCTTGAAAATACGTAAATGAATAATTTATGATGTTCTTCATTCTCCGTTTATCGTTTCTGAGTCCGTTAAGGATTYCAATTTTTGCAAAAAAGGCTAGGATTACTAGCTTCTGACGTGGTTACCAGGTGAGATTCTACATTGCAACCCACTGATCCTCCTTTTGATTCAACACAAATCTCTCCTTAATTTCCTGTGTCAATTCAAGGTAACCAAAACATGACGCAACAAAGGGATAAGAGAGGGGGGAGATCCGATTTTGCAGATTTTTGCAAGAGACTTTGTACCCGATTATAGTGGGTTTGATGGGTTTGGTATTTGGGAAAATTCAAAAGATACTGGGGATTGAAGACATTTTATAACAAAAATTGTCCTTTTTGAGGTTTACTCTAATTTGTTTCCAGATTCGTTTTTCAGATGGTTTAGGTACCAAATGATAGATCTCGACAGGGCGAATCACGTATATATCATTCGAGCCAGATCCCGGTCCGATAAAATGTCAAAAAATGTGTTTCAATGACAATTTTGGACCAATTCGACAAAAATCAGATTTATTGTCATTCAAGCACATTTTTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>305 238 124 117 62 59 50 33 12</canonical_bands>
                <polymorphic_bands>305 238 124 117 71 62 50 33</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>422 238 124 74 59 50 33</canonical_bands>
                <polymorphic_bands>422 238 133 124 50 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCGGAGTACATACAGTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>GTTACCTTGAATTGACACAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCGGAGTACATACAGTCTGAAATTTTTTTCAATTCGATTCTTGAAAATACGTAAATGAATAATTTATGATGTTCTTCATTCTCCGTTTATCGTTTCTGAGTCCGTTAAGGATTCCAATTTTTGCAAAAAAGGCTAGGATTACTAGCTTCTGACGTGGTTACCAGGTGAGATTCTACATTGCAACCCACTGATCCTCCTTTTGATTCAACACAAATCTCTCCTTAATTTCCTGTGTCAATTCAAGGTAAC</canonical_amplicon>
		<polymorphic_amplicon>CTCGGAGTACATACAGTCTGAAATTTTTTTCAATTCGATTCTTGAAAATACGTAAATGAATAATTTATGATGTTCTTCATTCTCCGTTTATCGTTTCTGAGTCCGTTAAGGATTYCAATTTTTGCAAAAAAGGCTAGGATTACTAGCTTCTGACGTGGTTACCAGGTGAGATTCTACATTGCAACCCACTGATCCTCCTTTTGATTCAACACAAATCTCTCCTTAATTTCCTGTGTCAATTCAAGGTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31289</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>406430</contig_pos>
        <strand>+</strand>
        <context>TCTCCTTAAT[A/T]TCCTGTGTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTGCAACCCACTGATCCTCCTTTTGATTCAACACAAATCTCTCCTTAAT</left_flank>
        <right_flank>TCCTGTGTCAATTCAAGGTAACCAAAACATGACGCAACAAAGGGATAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACATCTCACAAGCCATCACCATCAAATCTCTTGATGACTTCGGAGCAAACTTTGGCTCGATTTCCCGGGTAACCACTGATGAAGACGTTACTGAAAGTGCTCGTGGCACGACTTCAGATTTCAGGTCCCAGTCTAGATTGGCTCTTTTTAATCGGAGTGGAGATGATTTTTCTTCATCGAAACCTATACGACTCGCAGCGTTTCGATCGATATCATCACACCATTCCAGTGAAGCGCAAGATGAAGCCGCAATCGACATGTTGTCGGTTTCTCGGAGTACATACAGTCTGAAATTTTTTTCAATTCGATTCTTGAAAATACGTAAATGAATAATTTATGATGTTCTTCATTCTCCGTTTATCGTTTCTGAGTCCGTTAAGGATTCCAATTTTTGCAAAAAAGGCTAGGATTACTAGCTTCTGACGTGGTTACCAGGTGAGATTCTACATTGCAACCCACTGATCCTCCTTTTGATTCAACACAAATCTCTCCTTAATTTCCTGTGTCAATTCAAGGTAACCAAAACATGACGCAACAAAGGGATAAGAGAGGGGGGAGATCCGATTTTGCAGATTTTTGCAAGAGACTTTGTACCCGATTATAGTGGGTTTGATGGGTTTGGTATTTGGGAAAATTCAAAAGATACTGGGGATTGAAGACATTTTATAACAAAAATTGTCCTTTTTGAGGTTTACTCTAATTTGTTTCCAGATTCGTTTTTCAGATGGTTTAGGTACCAAATGATAGATCTCGACAGGGCGAATCACGTATATATCATTCGAGCCAGATCCCGGTCCGATAAAATGTCAAAAAATGTGTTTCAATGACAATTTTGGACCAATTCGACAAAAATCAGATTTATTGTCATTCAAGCACATTTTTCGACATGTTATCGGACCGGAATCCGGCTCAAATAATATAGGCGTGATGAGCCCTGTTGAGATCTATCAGTTGGTACCGAAACCGTCTGAACATCTCGTTTCAGAGACAAGTTATCA</canonical>
            <polymorphic>AAACATCTCACAAGCCATCACCATCAAATCTCTTGATGACTTCGGAGCAAACTTTGGCTCGATTTCCCGGGTAACCACTGATGAAGACGTTACTGAAAGTGCTCGTGGCACGACTTCAGATTTCAGGTCCCAGTCTAGATTGGCTCTTTTTAATCGGAGTGGAGATGATTTTTCTTCATCGAAACCTATACGACTCGCAGCGTTTCGATCGATATCATCACACCATTCCAGTGAAGCGCAAGATGAAGCCGCAATCGACATGTTGTCGGTTTCTCGGAGTACATACAGTCTGAAATTTTTTTCAATTCGATTCTTGAAAATACGTAAATGAATAATTTATGATGTTCTTCATTCTCCGTTTATCGTTTCTGAGTCCGTTAAGGATTCCAATTTTTGCAAAAAAGGCTAGGATTACTAGCTTCTGACGTGGTTACCAGGTGAGATTCTACATTGCAACCCACTGATCCTCCTTTTGATTCAACACAAATCTCTCCTTAATWTCCTGTGTCAATTCAAGGTAACCAAAACATGACGCAACAAAGGGATAAGAGAGGGGGGAGATCCGATTTTGCAGATTTTTGCAAGAGACTTTGTACCCGATTATAGTGGGTTTGATGGGTTTGGTATTTGGGAAAATTCAAAAGATACTGGGGATTGAAGACATTTTATAACAAAAATTGTCCTTTTTGAGGTTTACTCTAATTTGTTTCCAGATTCGTTTTTCAGATGGTTTAGGTACCAAATGATAGATCTCGACAGGGCGAATCACGTATATATCATTCGAGCCAGATCCCGGTCCGATAAAATGTCAAAAAATGTGTTTCAATGACAATTTTGGACCAATTCGACAAAAATCAGATTTATTGTCATTCAAGCACATTTTTCGACATGTTATCGGACCGGAATCCGGCTCAAATAATATAGGCGTGATGAGCCCTGTTGAGATCTATCAGTTGGTACCGAAACCGTCTGAACATCTCGTTTCAGAGACAAGTTATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>293 159 130 125 108 55 41 30 25 13 11 10</canonical_bands>
                <polymorphic_bands>293 159 130 125 121 55 41 30 25 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACTAGCTTCTGACGTGGTTAC</pcr_primer_p1>
		<pcr_primer_p2>TCTTCAATCCCCAGTATCTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTACTAGCTTCTGACGTGGTTACCAGGTGAGATTCTACATTGCAACCCACTGATCCTCCTTTTGATTCAACACAAATCTCTCCTTAATTTCCTGTGTCAATTCAAGGTAACCAAAACATGACGCAACAAAGGGATAAGAGAGGGGGGAGATCCGATTTTGCAGATTTTTGCAAGAGACTTTGTACCCGATTATAGTGGGTTTGATGGGTTTGGTATTTGGGAAAATTCAAAAGATACTGGGGATTGAAGA</canonical_amplicon>
		<polymorphic_amplicon>TTACTAGCTTCTGACGTGGTTACCAGGTGAGATTCTACATTGCAACCCACTGATCCTCCTTTTGATTCAACACAAATCTCTCCTTAATWTCCTGTGTCAATTCAAGGTAACCAAAACATGACGCAACAAAGGGATAAGAGAGGGGGGAGATCCGATTTTGCAGATTTTTGCAAGAGACTTTGTACCCGATTATAGTGGGTTTGATGGGTTTGGTATTTGGGAAAATTCAAAAGATACTGGGGATTGAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31290</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>460076</contig_pos>
        <strand>+</strand>
        <context>CCCAAAGAGA[A/G]AAAAAAAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGAGAGAGGAAAACTAACGAAAAATATATATACAGGTTGCCCAAAGAGA</left_flank>
        <right_flank>AAAAAAAAAGACAAAAAAACATAAGAAAGGAATGATGCTAGCCATGATGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATACTCAATCTCATGAACGAGCTTGTTCACGTAGATGCATGGATTTGCAGCGACTTCGCGATGTTCACAGTTTCGGCACGAGTACATCAAAACGCGAGATTCCTTGTCTTCGCGTGGATAGAGCATGTTGTTGCTGAAGAAAAACGATTTGATGGGCAAGATGGGAATTTAAAGGCTCACCACTCTGGACAGAATTTGATTCCGACGAATCCAGGCCCGCTCTTTCCATCGCCGTCGCTTGGCGCCGGCGAGAGACCCGCACTTGGATCATACATATCCTCGTCCTCATATTCTTGACTCATTTTTTGGCGCTGACCAATTACTCTATTTGAAATCCTGTAGACGAGAAATATTTGAAATATGGCGATGGTATAAAACCAAACGAAATACAAAGAAATTATCAAAATGACATTTTAAAATCCCCTTTTTTATATACACACCGACAGACGAAGAGAGAGGAAAACTAACGAAAAATATATATACAGGTTGCCCAAAGAGACAAAAAAAAAGACAAAAAAACATAAGAAAGGAATGATGCTAGCCATGATGTTCTATAAAAGTTGTGAAGAGAGCAATAGACAGAAAAGAAAAGTGAATTCAGTAAAAAAAAATTATTCATCCCAGTTGACCCATCCCTCTTCCTTCTTCTCGCTGCTATCAGGTCGTGGTGTCAATGGACCCTTCTCGTCGTCAGATGGAATCTCCTATAACTTTTCGAGAGCTTTCATTCACTTCCTTGACAAGATTTCACTAACCTCAACATTCTTCTCACTACAAACACTCCATTCCGATTGCGATGGACTCGTTGGCTCTTCCACAACCACCGCTGACGAGTCGGACGATGGTGACGACTTCTTCGACGACACTTCAGAAGATGTTTTTCTATTCGCCTTCTTTGGTGATTTAGTGTCTACATTCAATGCTTCGGATAGCGTGGATTTGTTCATTTCCTCCTCCATCTCAGCAACTTCGATCGCATAAAAATACCGTTTCCAGAATG</canonical>
            <polymorphic>ATACTCAATCTCATGAACGAGCTTGTTCACGTAGATGCATGGATTTGCAGCGACTTCGCGATGTTCACAGTTTCGGCACGAGTACATCAAAACGCGAGATTCCTTGTCTTCGCGTGGATAGAGCATGTTGTTGCTGAAGAAAAACGATTTGATGGGCAAGATGGGAATTTAAAGGCTCACCACTCTGGACAGAATTTGATTCCGACGAATCCAGGCCCGCTCTTTCCATCGCCGTCGCTTGGCGCCGGCGAGAGACCCGCACTTGGATCATACATATCCTCGTCCTCATATTCTTGACTCATTTTTTGGCGCTGACCAATTACTCTATTTGAAATCCTGTAGACGAGAAATATTTGAAATATGGCGATGGTATAAAACCAAACGAAATACAAAGAAATTATCAAAATGACATTTTAAAATCCCCTTTTTTATATACACACCGACAGACGAAGAGAGAGGAAAACTAACGAAAAATATATATACAGGTTGCCCAAAGAGARAAAAAAAAAGACAAAAAAACATAAGAAAGGAATGATGCTAGCCATGATGTTCTATAAAAGTTGTGAAGAGAGCAATAGACAGAAAAGAAAAGTGAATTCAGTAAAAAAAAATTATTCATCCCAGTTGACCCATCCCTCTTCCTTCTTCTCGCTGCTATCAGGTCGTGGTGTCAATGGACCCTTCTCGTCGTCAGATGGAATCTCCTATAACTTTTCGAGAGCTTTCATTCACTTCCTTGACAAGATTTCACTAACCTCAACATTCTTCTCACTACAAACACTCCATTCCGATTGCGATGGACTCGTTGGCTCTTCCACAACCACCGCTGACGAGTCGGACGATGGTGACGACTTCTTCGACGACACTTCAGAAGATGTTTTTCTATTCGCCTTCTTTGGTGATTTAGTGTCTACATTCAATGCTTCGGATAGCGTGGATTTGTTCATTTCCTCCTCCATCTCAGCAACTTCGATCGCATAAAAATACCGTTTCCAGAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTGTAGACGAGAAATATTTGAA</pcr_primer_p1>
		<pcr_primer_p2>CTGTCTATTGCTCTCTTCACAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCTGTAGACGAGAAATATTTGAAATATGGCGATGGTATAAAACCAAACGAAATACAAAGAAATTATCAAAATGACATTTTAAAATCCCCTTTTTTATATACACACCGACAGACGAAGAGAGAGGAAAACTAACGAAAAATATATATACAGGTTGCCCAAAGAGACAAAAAAAAAGACAAAAAAACATAAGAAAGGAATGATGCTAGCCATGATGTTCTATAAAAGTTGTGAAGAGAGCAATAGACAG</canonical_amplicon>
		<polymorphic_amplicon>CCTGTAGACGAGAAATATTTGAAATATGGCGATGGTATAAAACCAAACGAAATACAAAGAAATTATCAAAATGACATTTTAAAATCCCCTTTTTTATATACACACCGACAGACGAAGAGAGAGGAAAACTAACGAAAAATATATATACAGGTTGCCCAAAGAGARAAAAAAAAAGACAAAAAAACATAAGAAAGGAATGATGCTAGCCATGATGTTCTATAAAAGTTGTGAAGAGAGCAATAGACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31291</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>495923</contig_pos>
        <strand>+</strand>
        <context>CTGAAGAAGA[A/T]GATGATGAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGGCCACGCCCACCAGAGACACACCTCCCATGATTCATCCTGAAGAAGA</left_flank>
        <right_flank>GATGATGAGAAAAGTAAAGAAATAATGTTTTCTTGTTGTTTTGCAGTTGA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGAATCTTTGAGACGTATGGACTGTAACCTAGTGAAGCTAGGCTAAAGCTAATAATAAGCTACAAATATAGCACATCACTCACCATTGTCAAATTATGACTTCACTGGCTCCTTCCAGGTAATCCACACGGGCATTTGGGATCCCTGACGCTTGCCGTTGGAGTCACAAGATTTCCGACGCAACCAGCATCCTCAGCCGATAGCTGTAAGACATGAACTTTGAACAATGAAAAAAAAACGGTTACAATAAAAGAGAAAAATGAACAGAGGAATGCGCGAAAACGAGGTGGTGGAATTGAAAAATAATTGAGATCTATGGGAGGAGAGAAGATTGGGTCAACCGCCTCCGATCGAGAGACGAGCGGAGGAATGAATGACGCCTGCCCGGACACGACGGAGGTCTTCTCCTTTATTCCGTCGCAGGAGGAGGAGGTGTCCTTGGTACTTGAGGCCACGCCCACCAGAGACACACCTCCCATGATTCATCCTGAAGAAGATGATGATGAGAAAAGTAAAGAAATAATGTTTTCTTGTTGTTTTGCAGTTGAACTTTGGACACAACACAGTTGCACTTTTAAACGGATTGATAGGAAAGGAGAGATTCCGATCTTTCTAAAAAGATTCGGTGATCTGTGATAAATTGATAATACAGTACAAAAGTGTTGCGGATCGGGCGAAGAAAAAGAAGAGAGATAGGATTTATAAACGAAAAGTGTGTGACAGGCGCGAGATGAGACGACGAGTAAATGAAAGATTTGGGGGGAAAAGTTGAAGTTAGATGAAGAAGGCGGCTACGTCATCTGGGATTGGGACACAGACTGATAAAGGATTCTTGGATTTCCGGATCAAAAGTTCAAAATTTTATATAGTTTTCTGGAAGGTGTTCTTAGAAGGGAGGTTGGTTTGAATCACTTTTTGAGCTGTGTACCGAAAATTTATCGTAAATGCTCTAATAGAAGCCCACCCAAACCGTCAACTTTGAGCTTAATTATCTCGAT</canonical>
            <polymorphic>AAAGAATCTTTGAGACGTATGGACTGTAACCTAGTGAAGCTAGGCTAAAGCTAATAATAAGCTACAAATATAGCACATCACTCACCATTGTCAAATTATGACTTCACTGGCTCCTTCCAGGTAATCCACACGGGCATTTGGGATCCCTGACGCTTGCCGTTGGAGTCACAAGATTTCCGACGCAACCAGCATCCTCAGCCGATAGCTGTAAGACATGAACTTTGAACAATGAAAAAAAAACGGTTACAATAAAAGAGAAAAATGAACAGAGGAATGCGCGAAAACGAGGTGGTGGAATTGAAAAATAATTGAGATCTATGGGAGGAGAGAAGATTGGGTCAACCGCCTCCGATCGAGAGACGAGCGGAGGAATGAATGACGCCTGCCCGGACACGACGGAGGTCTTCTCCTTTATTCCGTCGCAGGAGGAGGAGGTGTCCTTGGTACTTGAGGCCACGCCCACCAGAGACACACCTCCCATGATTCATCCTGAAGAAGAWGATGATGAGAAAAGTAAAGAAATAATGTTTTCTTGTTGTTTTGCAGTTGAACTTTGGACACAACACAGTTGCACTTTTAAACGGATTGATAGGAAAGGAGAGATTCCGATCTTTCTAAAAAGATTCGGTGATCTGTGATAAATTGATAATACAGTACAAAAGTGTTGCGGATCGGGCGAAGAAAAAGAAGAGAGATAGGATTTATAAACGAAAAGTGTGTGACAGGCGCGAGATGAGACGACGAGTAAATGAAAGATTTGGGGGGAAAAGTTGAAGTTAGATGAAGAAGGCGGCTACGTCATCTGGGATTGGGACACAGACTGATAAAGGATTCTTGGATTTCCGGATCAAAAGTTCAAAATTTTATATAGTTTTCTGGAAGGTGTTCTTAGAAGGGAGGTTGGTTTGAATCACTTTTTGAGCTGTGTACCGAAAATTTATCGTAAATGCTCTAATAGAAGCCCACCCAAACCGTCAACTTTGAGCTTAATTATCTCGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAATTGAGATCTATGGGAGGAG</pcr_primer_p1>
		<pcr_primer_p2>AAGTTCAACTGCAAAACAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAATTGAGATCTATGGGAGGAGAGAAGATTGGGTCAACCGCCTCCGATCGAGAGACGAGCGGAGGAATGAATGACGCCTGCCCGGACACGACGGAGGTCTTCTCCTTTATTCCGTCGCAGGAGGAGGAGGTGTCCTTGGTACTTGAGGCCACGCCCACCAGAGACACACCTCCCATGATTCATCCTGAAGAAGATGATGATGAGAAAAGTAAAGAAATAATGTTTTCTTGTTGTTTTGCAGTTGAACTT</canonical_amplicon>
		<polymorphic_amplicon>ATAATTGAGATCTATGGGAGGAGAGAAGATTGGGTCAACCGCCTCCGATCGAGAGACGAGCGGAGGAATGAATGACGCCTGCCCGGACACGACGGAGGTCTTCTCCTTTATTCCGTCGCAGGAGGAGGAGGTGTCCTTGGTACTTGAGGCCACGCCCACCAGAGACACACCTCCCATGATTCATCCTGAAGAAGAWGATGATGAGAAAAGTAAAGAAATAATGTTTTCTTGTTGTTTTGCAGTTGAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31292</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>496028</contig_pos>
        <strand>+</strand>
        <context>AAGGAGAGAT[C/T]CCGATCTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGACACAACACAGTTGCACTTTTAAACGGATTGATAGGAAAGGAGAGAT</left_flank>
        <right_flank>CCGATCTTTCTAAAAAGATTCGGTGATCTGTGATAAATTGATAATACAGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTGGCTCCTTCCAGGTAATCCACACGGGCATTTGGGATCCCTGACGCTTGCCGTTGGAGTCACAAGATTTCCGACGCAACCAGCATCCTCAGCCGATAGCTGTAAGACATGAACTTTGAACAATGAAAAAAAAACGGTTACAATAAAAGAGAAAAATGAACAGAGGAATGCGCGAAAACGAGGTGGTGGAATTGAAAAATAATTGAGATCTATGGGAGGAGAGAAGATTGGGTCAACCGCCTCCGATCGAGAGACGAGCGGAGGAATGAATGACGCCTGCCCGGACACGACGGAGGTCTTCTCCTTTATTCCGTCGCAGGAGGAGGAGGTGTCCTTGGTACTTGAGGCCACGCCCACCAGAGACACACCTCCCATGATTCATCCTGAAGAAGATGATGATGAGAAAAGTAAAGAAATAATGTTTTCTTGTTGTTTTGCAGTTGAACTTTGGACACAACACAGTTGCACTTTTAAACGGATTGATAGGAAAGGAGAGATTCCGATCTTTCTAAAAAGATTCGGTGATCTGTGATAAATTGATAATACAGTACAAAAGTGTTGCGGATCGGGCGAAGAAAAAGAAGAGAGATAGGATTTATAAACGAAAAGTGTGTGACAGGCGCGAGATGAGACGACGAGTAAATGAAAGATTTGGGGGGAAAAGTTGAAGTTAGATGAAGAAGGCGGCTACGTCATCTGGGATTGGGACACAGACTGATAAAGGATTCTTGGATTTCCGGATCAAAAGTTCAAAATTTTATATAGTTTTCTGGAAGGTGTTCTTAGAAGGGAGGTTGGTTTGAATCACTTTTTGAGCTGTGTACCGAAAATTTATCGTAAATGCTCTAATAGAAGCCCACCCAAACCGTCAACTTTGAGCTTAATTATCTCGATTCCTGTGAAAGGTATCAAAATTTAGTCAACTGATGAAATATTTATCATAATATTGCCAATATTTTATCAGTTGACAAATTTTTGATACCTTTTATAGGAACCGAG</canonical>
            <polymorphic>ACTGGCTCCTTCCAGGTAATCCACACGGGCATTTGGGATCCCTGACGCTTGCCGTTGGAGTCACAAGATTTCCGACGCAACCAGCATCCTCAGCCGATAGCTGTAAGACATGAACTTTGAACAATGAAAAAAAAACGGTTACAATAAAAGAGAAAAATGAACAGAGGAATGCGCGAAAACGAGGTGGTGGAATTGAAAAATAATTGAGATCTATGGGAGGAGAGAAGATTGGGTCAACCGCCTCCGATCGAGAGACGAGCGGAGGAATGAATGACGCCTGCCCGGACACGACGGAGGTCTTCTCCTTTATTCCGTCGCAGGAGGAGGAGGTGTCCTTGGTACTTGAGGCCACGCCCACCAGAGACACACCTCCCATGATTCATCCTGAAGAAGATGATGATGAGAAAAGTAAAGAAATAATGTTTTCTTGTTGTTTTGCAGTTGAACTTTGGACACAACACAGTTGCACTTTTAAACGGATTGATAGGAAAGGAGAGATYCCGATCTTTCTAAAAAGATTCGGTGATCTGTGATAAATTGATAATACAGTACAAAAGTGTTGCGGATCGGGCGAAGAAAAAGAAGAGAGATAGGATTTATAAACGAAAAGTGTGTGACAGGCGCGAGATGAGACGACGAGTAAATGAAAGATTTGGGGGGAAAAGTTGAAGTTAGATGAAGAAGGCGGCTACGTCATCTGGGATTGGGACACAGACTGATAAAGGATTCTTGGATTTCCGGATCAAAAGTTCAAAATTTTATATAGTTTTCTGGAAGGTGTTCTTAGAAGGGAGGTTGGTTTGAATCACTTTTTGAGCTGTGTACCGAAAATTTATCGTAAATGCTCTAATAGAAGCCCACCCAAACCGTCAACTTTGAGCTTAATTATCTCGATTCCTGTGAAAGGTATCAAAATTTAGTCAACTGATGAAATATTTATCATAATATTGCCAATATTTTATCAGTTGACAAATTTTTGATACCTTTTATAGGAACCGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>319 208 120 107 90 78 58 20</canonical_bands>
                <polymorphic_bands>319 208 140 107 90 78 58</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>498 257 172 73</canonical_bands>
                <polymorphic_bands>755 172 73</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>377 208 120 107 90 78 20</canonical_bands>
                <polymorphic_bands>377 208 140 107 90 78</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGAACTTTGGACACAACAC</pcr_primer_p1>
		<pcr_primer_p2>GCCTTCTTCATCTAACTTCAACT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTGAACTTTGGACACAACACAGTTGCACTTTTAAACGGATTGATAGGAAAGGAGAGATTCCGATCTTTCTAAAAAGATTCGGTGATCTGTGATAAATTGATAATACAGTACAAAAGTGTTGCGGATCGGGCGAAGAAAAAGAAGAGAGATAGGATTTATAAACGAAAAGTGTGTGACAGGCGCGAGATGAGACGACGAGTAAATGAAAGATTTGGGGGGAAAAGTTGAAGTTAGATGAAGAAGGC</canonical_amplicon>
		<polymorphic_amplicon>GTTGAACTTTGGACACAACACAGTTGCACTTTTAAACGGATTGATAGGAAAGGAGAGATYCCGATCTTTCTAAAAAGATTCGGTGATCTGTGATAAATTGATAATACAGTACAAAAGTGTTGCGGATCGGGCGAAGAAAAAGAAGAGAGATAGGATTTATAAACGAAAAGTGTGTGACAGGCGCGAGATGAGACGACGAGTAAATGAAAGATTTGGGGGGAAAAGTTGAAGTTAGATGAAGAAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31293</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>496305</contig_pos>
        <strand>+</strand>
        <context>TTTTCTGGAA[G/T]GTGTTCTTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCTTGGATTTCCGGATCAAAAGTTCAAAATTTTATATAGTTTTCTGGAA</left_flank>
        <right_flank>GTGTTCTTAGAAGGGAGGTTGGTTTGAATCACTTTTTGAGCTGTGTACCG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGCCCGGACACGACGGAGGTCTTCTCCTTTATTCCGTCGCAGGAGGAGGAGGTGTCCTTGGTACTTGAGGCCACGCCCACCAGAGACACACCTCCCATGATTCATCCTGAAGAAGATGATGATGAGAAAAGTAAAGAAATAATGTTTTCTTGTTGTTTTGCAGTTGAACTTTGGACACAACACAGTTGCACTTTTAAACGGATTGATAGGAAAGGAGAGATTCCGATCTTTCTAAAAAGATTCGGTGATCTGTGATAAATTGATAATACAGTACAAAAGTGTTGCGGATCGGGCGAAGAAAAAGAAGAGAGATAGGATTTATAAACGAAAAGTGTGTGACAGGCGCGAGATGAGACGACGAGTAAATGAAAGATTTGGGGGGAAAAGTTGAAGTTAGATGAAGAAGGCGGCTACGTCATCTGGGATTGGGACACAGACTGATAAAGGATTCTTGGATTTCCGGATCAAAAGTTCAAAATTTTATATAGTTTTCTGGAAGGTGTTCTTAGAAGGGAGGTTGGTTTGAATCACTTTTTGAGCTGTGTACCGAAAATTTATCGTAAATGCTCTAATAGAAGCCCACCCAAACCGTCAACTTTGAGCTTAATTATCTCGATTCCTGTGAAAGGTATCAAAATTTAGTCAACTGATGAAATATTTATCATAATATTGCCAATATTTTATCAGTTGACAAATTTTTGATACCTTTTATAGGAACCGAGATAATTGAGTTTAAAGTTGACGGCTTTCGCGAGCTGTCAAATACGGTACTTCCATTTGAGCTCAATTATTCCGATTCCTGTAAAAGATATTAAAACTTCGTCAACTGATAAAATCTTGATAATATTATGATGAACAATTTACCCGTTAGCAATTTTTTGATATCTTTGATAGCAACCGAGATAATTGAGCTCAAAGTTGATGGTTTGGATGGTCTTTAATTAAAGCCGGTACTTAAGAAAAAATATCTTGATTTTTATTGGTGACTTCTTCATGGGA</canonical>
            <polymorphic>CTGCCCGGACACGACGGAGGTCTTCTCCTTTATTCCGTCGCAGGAGGAGGAGGTGTCCTTGGTACTTGAGGCCACGCCCACCAGAGACACACCTCCCATGATTCATCCTGAAGAAGATGATGATGAGAAAAGTAAAGAAATAATGTTTTCTTGTTGTTTTGCAGTTGAACTTTGGACACAACACAGTTGCACTTTTAAACGGATTGATAGGAAAGGAGAGATTCCGATCTTTCTAAAAAGATTCGGTGATCTGTGATAAATTGATAATACAGTACAAAAGTGTTGCGGATCGGGCGAAGAAAAAGAAGAGAGATAGGATTTATAAACGAAAAGTGTGTGACAGGCGCGAGATGAGACGACGAGTAAATGAAAGATTTGGGGGGAAAAGTTGAAGTTAGATGAAGAAGGCGGCTACGTCATCTGGGATTGGGACACAGACTGATAAAGGATTCTTGGATTTCCGGATCAAAAGTTCAAAATTTTATATAGTTTTCTGGAAKGTGTTCTTAGAAGGGAGGTTGGTTTGAATCACTTTTTGAGCTGTGTACCGAAAATTTATCGTAAATGCTCTAATAGAAGCCCACCCAAACCGTCAACTTTGAGCTTAATTATCTCGATTCCTGTGAAAGGTATCAAAATTTAGTCAACTGATGAAATATTTATCATAATATTGCCAATATTTTATCAGTTGACAAATTTTTGATACCTTTTATAGGAACCGAGATAATTGAGTTTAAAGTTGACGGCTTTCGCGAGCTGTCAAATACGGTACTTCCATTTGAGCTCAATTATTCCGATTCCTGTAAAAGATATTAAAACTTCGTCAACTGATAAAATCTTGATAATATTATGATGAACAATTTACCCGTTAGCAATTTTTTGATATCTTTGATAGCAACCGAGATAATTGAGCTCAAAGTTGATGGTTTGGATGGTCTTTAATTAAAGCCGGTACTTAAGAAAAAATATCTTGATTTTTATTGGTGACTTCTTCATGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTGATAAAGGATTCTTGGATTT</pcr_primer_p1>
		<pcr_primer_p2>GAAGTACCGTATTTGACAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>338</pcr_amplicon_size>
		<canonical_amplicon>ACTGATAAAGGATTCTTGGATTTCCGGATCAAAAGTTCAAAATTTTATATAGTTTTCTGGAAGGTGTTCTTAGAAGGGAGGTTGGTTTGAATCACTTTTTGAGCTGTGTACCGAAAATTTATCGTAAATGCTCTAATAGAAGCCCACCCAAACCGTCAACTTTGAGCTTAATTATCTCGATTCCTGTGAAAGGTATCAAAATTTAGTCAACTGATGAAATATTTATCATAATATTGCCAATATTTTATCAGTTGACAAATTTTTGATACCTTTTATAGGAACCGAGATAATTGAGTTTAAAGTTGACGGCTTTCGCGAGCTGTCAAATACGGTACTTC</canonical_amplicon>
		<polymorphic_amplicon>ACTGATAAAGGATTCTTGGATTTCCGGATCAAAAGTTCAAAATTTTATATAGTTTTCTGGAAKGTGTTCTTAGAAGGGAGGTTGGTTTGAATCACTTTTTGAGCTGTGTACCGAAAATTTATCGTAAATGCTCTAATAGAAGCCCACCCAAACCGTCAACTTTGAGCTTAATTATCTCGATTCCTGTGAAAGGTATCAAAATTTAGTCAACTGATGAAATATTTATCATAATATTGCCAATATTTTATCAGTTGACAAATTTTTGATACCTTTTATAGGAACCGAGATAATTGAGTTTAAAGTTGACGGCTTTCGCGAGCTGTCAAATACGGTACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31294</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>496352</contig_pos>
        <strand>+</strand>
        <context>TGAGCTGTGT[A/C]CCGAAAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAGGTGTTCTTAGAAGGGAGGTTGGTTTGAATCACTTTTTGAGCTGTGT</left_flank>
        <right_flank>CCGAAAATTTATCGTAAATGCTCTAATAGAAGCCCACCCAAACCGTCAAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAGGTGTCCTTGGTACTTGAGGCCACGCCCACCAGAGACACACCTCCCATGATTCATCCTGAAGAAGATGATGATGAGAAAAGTAAAGAAATAATGTTTTCTTGTTGTTTTGCAGTTGAACTTTGGACACAACACAGTTGCACTTTTAAACGGATTGATAGGAAAGGAGAGATTCCGATCTTTCTAAAAAGATTCGGTGATCTGTGATAAATTGATAATACAGTACAAAAGTGTTGCGGATCGGGCGAAGAAAAAGAAGAGAGATAGGATTTATAAACGAAAAGTGTGTGACAGGCGCGAGATGAGACGACGAGTAAATGAAAGATTTGGGGGGAAAAGTTGAAGTTAGATGAAGAAGGCGGCTACGTCATCTGGGATTGGGACACAGACTGATAAAGGATTCTTGGATTTCCGGATCAAAAGTTCAAAATTTTATATAGTTTTCTGGAAGGTGTTCTTAGAAGGGAGGTTGGTTTGAATCACTTTTTGAGCTGTGTACCGAAAATTTATCGTAAATGCTCTAATAGAAGCCCACCCAAACCGTCAACTTTGAGCTTAATTATCTCGATTCCTGTGAAAGGTATCAAAATTTAGTCAACTGATGAAATATTTATCATAATATTGCCAATATTTTATCAGTTGACAAATTTTTGATACCTTTTATAGGAACCGAGATAATTGAGTTTAAAGTTGACGGCTTTCGCGAGCTGTCAAATACGGTACTTCCATTTGAGCTCAATTATTCCGATTCCTGTAAAAGATATTAAAACTTCGTCAACTGATAAAATCTTGATAATATTATGATGAACAATTTACCCGTTAGCAATTTTTTGATATCTTTGATAGCAACCGAGATAATTGAGCTCAAAGTTGATGGTTTGGATGGTCTTTAATTAAAGCCGGTACTTAAGAAAAAATATCTTGATTTTTATTGGTGACTTCTTCATGGGAAGATTTATAGAAAGTTTTTTGAGATTGTAATTGGAAATATCTTGGAT</canonical>
            <polymorphic>AGGAGGTGTCCTTGGTACTTGAGGCCACGCCCACCAGAGACACACCTCCCATGATTCATCCTGAAGAAGATGATGATGAGAAAAGTAAAGAAATAATGTTTTCTTGTTGTTTTGCAGTTGAACTTTGGACACAACACAGTTGCACTTTTAAACGGATTGATAGGAAAGGAGAGATTCCGATCTTTCTAAAAAGATTCGGTGATCTGTGATAAATTGATAATACAGTACAAAAGTGTTGCGGATCGGGCGAAGAAAAAGAAGAGAGATAGGATTTATAAACGAAAAGTGTGTGACAGGCGCGAGATGAGACGACGAGTAAATGAAAGATTTGGGGGGAAAAGTTGAAGTTAGATGAAGAAGGCGGCTACGTCATCTGGGATTGGGACACAGACTGATAAAGGATTCTTGGATTTCCGGATCAAAAGTTCAAAATTTTATATAGTTTTCTGGAAGGTGTTCTTAGAAGGGAGGTTGGTTTGAATCACTTTTTGAGCTGTGTMCCGAAAATTTATCGTAAATGCTCTAATAGAAGCCCACCCAAACCGTCAACTTTGAGCTTAATTATCTCGATTCCTGTGAAAGGTATCAAAATTTAGTCAACTGATGAAATATTTATCATAATATTGCCAATATTTTATCAGTTGACAAATTTTTGATACCTTTTATAGGAACCGAGATAATTGAGTTTAAAGTTGACGGCTTTCGCGAGCTGTCAAATACGGTACTTCCATTTGAGCTCAATTATTCCGATTCCTGTAAAAGATATTAAAACTTCGTCAACTGATAAAATCTTGATAATATTATGATGAACAATTTACCCGTTAGCAATTTTTTGATATCTTTGATAGCAACCGAGATAATTGAGCTCAAAGTTGATGGTTTGGATGGTCTTTAATTAAAGCCGGTACTTAAGAAAAAATATCTTGATTTTTATTGGTGACTTCTTCATGGGAAGATTTATAGAAAGTTTTTTGAGATTGTAATTGGAAATATCTTGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>273 224 210 183 94 16</canonical_bands>
                <polymorphic_bands>497 210 183 94 16</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 222 84 51 51 49 45</canonical_bands>
                <polymorphic_bands>547 222 84 51 51 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTCCGGATCAAAAGTTC</pcr_primer_p1>
		<pcr_primer_p2>GAAGTACCGTATTTGACAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>GATTTCCGGATCAAAAGTTCAAAATTTTATATAGTTTTCTGGAAGGTGTTCTTAGAAGGGAGGTTGGTTTGAATCACTTTTTGAGCTGTGTACCGAAAATTTATCGTAAATGCTCTAATAGAAGCCCACCCAAACCGTCAACTTTGAGCTTAATTATCTCGATTCCTGTGAAAGGTATCAAAATTTAGTCAACTGATGAAATATTTATCATAATATTGCCAATATTTTATCAGTTGACAAATTTTTGATACCTTTTATAGGAACCGAGATAATTGAGTTTAAAGTTGACGGCTTTCGCGAGCTGTCAAATACGGTACTTC</canonical_amplicon>
		<polymorphic_amplicon>GATTTCCGGATCAAAAGTTCAAAATTTTATATAGTTTTCTGGAAGGTGTTCTTAGAAGGGAGGTTGGTTTGAATCACTTTTTGAGCTGTGTMCCGAAAATTTATCGTAAATGCTCTAATAGAAGCCCACCCAAACCGTCAACTTTGAGCTTAATTATCTCGATTCCTGTGAAAGGTATCAAAATTTAGTCAACTGATGAAATATTTATCATAATATTGCCAATATTTTATCAGTTGACAAATTTTTGATACCTTTTATAGGAACCGAGATAATTGAGTTTAAAGTTGACGGCTTTCGCGAGCTGTCAAATACGGTACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31295</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>561017</contig_pos>
        <strand>+</strand>
        <context>ACTTAAAATA[C/G]GTATAAAATA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGCTCATTGTTGGAGTTGCTGAGTTGCTACTAGCTGAGTTACTTAAAATA</left_flank>
        <right_flank>GTATAAAATATTCCAAAAGTCGGTCCATTTCAAAGATATTGAAAAGTTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATAAATGAGTAGAGAGTTGGCTAATTGAGAACCAATAAAACCAAAGTATTGGATGACATGAAGGTAAAGCATTATGTCAAGAATGACACTTTTGTTTTTCCAGTTTTTGGGTTTTATAGCATCCAGCTGAGACTAGAGAAAGGAAATTTGGACTACATTCTAAAATGAATCATTAGGTATGTTTTTGTGTCGCGTTCAAGAACAAAAAGAAAACAATCTAACGGATACTATTCAAACAGTGCGAAGGACTTATGACGATAGAGAAGAGGTCCTGTGTTCTGATTGATCAGATGTGTGAAGTTTCAAAAATCGGATCGAAGTTTTGAATAGGGGTAATTAGTGGTATATTTTCAAGGAGAATAGAGATGTGTTAAAAATGGGCGAACATGAAAAAATAACTTTCTACAGATTCCGTTCATACGAGCCCCTTGAGGTGTTGATCTTGTGGGCTCATTGTTGGAGTTGCTGAGTTGCTACTAGCTGAGTTACTTAAAATAGGTATAAAATATTCCAAAAGTCGGTCCATTTCAAAGATATTGAAAAGTTGTACACCGTACCTTTGATCTTGGAACGATGCCGATAGAAGAGTATACCCTTGGAAACCTAGTATACTTTATACAGGATACAGTCTCATCACACCGAAACCTTGTCGGCTCTTTTTTTTTCAGAAGTATACTGTCTTTAGCACCGCCCATACAATTTTAGGACCATTCATTTCCATGCCTTTCCTCCTGCCATTCATTCATTCACTAAAATGAACCGTACTCTCTACTACGTCTCTTTTCTTCTGATCCTTGCCCAATATTGCTCATCAACTGGCGTTTTGGGGCTTCGGGTGTCTTCTTCGAAAGATGTCGTCGCTCGGATGGAACTACTCGATCGAGAGAACTCTTCAAGATATGGAATATCGTTCGATCTTCATTTGGATCCAAAATACCATGAATTCGTGTTTCCATTTCCACCACCATCATCCAAATCACTGCTCCCAGTTCTTGAGT</canonical>
            <polymorphic>AGATAAATGAGTAGAGAGTTGGCTAATTGAGAACCAATAAAACCAAAGTATTGGATGACATGAAGGTAAAGCATTATGTCAAGAATGACACTTTTGTTTTTCCAGTTTTTGGGTTTTATAGCATCCAGCTGAGACTAGAGAAAGGAAATTTGGACTACATTCTAAAATGAATCATTAGGTATGTTTTTGTGTCGCGTTCAAGAACAAAAAGAAAACAATCTAACGGATACTATTCAAACAGTGCGAAGGACTTATGACGATAGAGAAGAGGTCCTGTGTTCTGATTGATCAGATGTGTGAAGTTTCAAAAATCGGATCGAAGTTTTGAATAGGGGTAATTAGTGGTATATTTTCAAGGAGAATAGAGATGTGTTAAAAATGGGCGAACATGAAAAAATAACTTTCTACAGATTCCGTTCATACGAGCCCCTTGAGGTGTTGATCTTGTGGGCTCATTGTTGGAGTTGCTGAGTTGCTACTAGCTGAGTTACTTAAAATASGTATAAAATATTCCAAAAGTCGGTCCATTTCAAAGATATTGAAAAGTTGTACACCGTACCTTTGATCTTGGAACGATGCCGATAGAAGAGTATACCCTTGGAAACCTAGTATACTTTATACAGGATACAGTCTCATCACACCGAAACCTTGTCGGCTCTTTTTTTTTCAGAAGTATACTGTCTTTAGCACCGCCCATACAATTTTAGGACCATTCATTTCCATGCCTTTCCTCCTGCCATTCATTCATTCACTAAAATGAACCGTACTCTCTACTACGTCTCTTTTCTTCTGATCCTTGCCCAATATTGCTCATCAACTGGCGTTTTGGGGCTTCGGGTGTCTTCTTCGAAAGATGTCGTCGCTCGGATGGAACTACTCGATCGAGAGAACTCTTCAAGATATGGAATATCGTTCGATCTTCATTTGGATCCAAAATACCATGAATTCGTGTTTCCATTTCCACCACCATCATCCAAATCACTGCTCCCAGTTCTTGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAAGGAGAATAGAGATGTG</pcr_primer_p1>
		<pcr_primer_p2>TATACTCTTCTATCGGCATCGT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAAGGAGAATAGAGATGTGTTAAAAATGGGCGAACATGAAAAAATAACTTTCTACAGATTCCGTTCATACGAGCCCCTTGAGGTGTTGATCTTGTGGGCTCATTGTTGGAGTTGCTGAGTTGCTACTAGCTGAGTTACTTAAAATAGGTATAAAATATTCCAAAAGTCGGTCCATTTCAAAGATATTGAAAAGTTGTACACCGTACCTTTGATCTTGGAACGATGCCGATAGAAGAGTATA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAAGGAGAATAGAGATGTGTTAAAAATGGGCGAACATGAAAAAATAACTTTCTACAGATTCCGTTCATACGAGCCCCTTGAGGTGTTGATCTTGTGGGCTCATTGTTGGAGTTGCTGAGTTGCTACTAGCTGAGTTACTTAAAATASGTATAAAATATTCCAAAAGTCGGTCCATTTCAAAGATATTGAAAAGTTGTACACCGTACCTTTGATCTTGGAACGATGCCGATAGAAGAGTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31296</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>563112</contig_pos>
        <strand>+</strand>
        <context>CAGGGTACGG[C/T]AGGTTTTGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGAACTAAGATCAGATAAGAAGAATGGGAAGACAATAACCAGGGTACGG</left_flank>
        <right_flank>AGGTTTTGTTTTTTCTTTGGCAAGGGTAATCCTCAAGATTTCCCTTATTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTTCGTTTACTGCGAAAAAGAAGAAGTGTTTCATATTCTAAGAAGATTCTACAAGTTTGGGCAGATGACGTTAGAAGGTCTTGTTTTTCGGGTACGTAAGATTAATCCTAAAGTCTAATACTTCTCCCTATTCTTTAAAGATTTTTTCCCTATTCTTTCAGACAATGAAGTTCTCTAAAACTTCCGGAAAACTATCATTTCGTTTTTTTTTGTATGCCAAAACATAGATCATTTCCAAGAAAGGTCTCAATATTTTGAATTTTTGCAAAAAAGAGGGACACACCGAATTCTCATTAAAAACTTCCCGAATCTTCTGTTTATTTACACCCTCCGGCTATTTAAATAAATACAGAGCCTCTTTTTCTAGACAACTCGAAGATGGGTAAGATTTTGGTTTTGATTCTCTTATTCTGTCTTTTCCATAGAATTTTTATTCTTCCACTTATATTGAACTAAGATCAGATAAGAAGAATGGGAAGACAATAACCAGGGTACGGCAGGTTTTGTTTTTTCTTTGGCAAGGGTAATCCTCAAGATTTCCCTTATTAAGAATTCTCGAAGAGAGTATTTTAGCATTTTTACATGCATCGGTAGATCGTGTTCTCTAACGGCTCATTGAACAGTTGACGCTTTTTTCTAGCCATGTAGTCCTTAATTACAATCGTTTACCTTTATCACTGACCATCTTCTCACCCAACAACTTCAACTCAAATTCCATTCTGACGTTTTGTTTTTTCTGAATTTCTTCAAAGCTTATTACTTCCATTTACCCAAATTTTCTCCTAAAGTTATCGAAAATATTTTTGGGTTTTTAACTAGGAGTGAGAAGCAGCTGGAGCAAAATAACACTGTTTCGATGTTGCGAATCTGAGGTGCTCAGAGGAAAATGATGTCATTTTTAAAATTTCAAATTAGTATATTTCTGTTTTCGAAGTTAGTCATTCAAATTAGTTCTAAAAATCTCCTACACAAATAAACGCCAAGCGGTCAACACATAC</canonical>
            <polymorphic>AGTTTCGTTTACTGCGAAAAAGAAGAAGTGTTTCATATTCTAAGAAGATTCTACAAGTTTGGGCAGATGACGTTAGAAGGTCTTGTTTTTCGGGTACGTAAGATTAATCCTAAAGTCTAATACTTCTCCCTATTCTTTAAAGATTTTTTCCCTATTCTTTCAGACAATGAAGTTCTCTAAAACTTCCGGAAAACTATCATTTCGTTTTTTTTTGTATGCCAAAACATAGATCATTTCCAAGAAAGGTCTCAATATTTTGAATTTTTGCAAAAAAGAGGGACACACCGAATTCTCATTAAAAACTTCCCGAATCTTCTGTTTATTTACACCCTCCGGCTATTTAAATAAATACAGAGCCTCTTTTTCTAGACAACTCGAAGATGGGTAAGATTTTGGTTTTGATTCTCTTATTCTGTCTTTTCCATAGAATTTTTATTCTTCCACTTATATTGAACTAAGATCAGATAAGAAGAATGGGAAGACAATAACCAGGGTACGGYAGGTTTTGTTTTTTCTTTGGCAAGGGTAATCCTCAAGATTTCCCTTATTAAGAATTCTCGAAGAGAGTATTTTAGCATTTTTACATGCATCGGTAGATCGTGTTCTCTAACGGCTCATTGAACAGTTGACGCTTTTTTCTAGCCATGTAGTCCTTAATTACAATCGTTTACCTTTATCACTGACCATCTTCTCACCCAACAACTTCAACTCAAATTCCATTCTGACGTTTTGTTTTTTCTGAATTTCTTCAAAGCTTATTACTTCCATTTACCCAAATTTTCTCCTAAAGTTATCGAAAATATTTTTGGGTTTTTAACTAGGAGTGAGAAGCAGCTGGAGCAAAATAACACTGTTTCGATGTTGCGAATCTGAGGTGCTCAGAGGAAAATGATGTCATTTTTAAAATTTCAAATTAGTATATTTCTGTTTTCGAAGTTAGTCATTCAAATTAGTTCTAAAAATCTCCTACACAAATAAACGCCAAGCGGTCAACACATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGATTTTGGTTTTGATTCTCTT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGCGTCAACTGTTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGATTTTGGTTTTGATTCTCTTATTCTGTCTTTTCCATAGAATTTTTATTCTTCCACTTATATTGAACTAAGATCAGATAAGAAGAATGGGAAGACAATAACCAGGGTACGGCAGGTTTTGTTTTTTCTTTGGCAAGGGTAATCCTCAAGATTTCCCTTATTAAGAATTCTCGAAGAGAGTATTTTAGCATTTTTACATGCATCGGTAGATCGTGTTCTCTAACGGCTCATTGAACAGTTGACGCTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAGATTTTGGTTTTGATTCTCTTATTCTGTCTTTTCCATAGAATTTTTATTCTTCCACTTATATTGAACTAAGATCAGATAAGAAGAATGGGAAGACAATAACCAGGGTACGGYAGGTTTTGTTTTTTCTTTGGCAAGGGTAATCCTCAAGATTTCCCTTATTAAGAATTCTCGAAGAGAGTATTTTAGCATTTTTACATGCATCGGTAGATCGTGTTCTCTAACGGCTCATTGAACAGTTGACGCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31297</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>563151</contig_pos>
        <strand>+</strand>
        <context>ATCCTCAAGA[C/T]YTCCCTTATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAGGGTACGGCAGGTTTTGTTTTTTCTTTGGCAAGGGTAATCCTCAAGA</left_flank>
        <right_flank>TTCCCTTATTAAGAATTCTCGAAGAGAGTATTTTAGCATTTTTACATGCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAAGAAGATTCTACAAGTTTGGGCAGATGACGTTAGAAGGTCTTGTTTTTCGGGTACGTAAGATTAATCCTAAAGTCTAATACTTCTCCCTATTCTTTAAAGATTTTTTCCCTATTCTTTCAGACAATGAAGTTCTCTAAAACTTCCGGAAAACTATCATTTCGTTTTTTTTTGTATGCCAAAACATAGATCATTTCCAAGAAAGGTCTCAATATTTTGAATTTTTGCAAAAAAGAGGGACACACCGAATTCTCATTAAAAACTTCCCGAATCTTCTGTTTATTTACACCCTCCGGCTATTTAAATAAATACAGAGCCTCTTTTTCTAGACAACTCGAAGATGGGTAAGATTTTGGTTTTGATTCTCTTATTCTGTCTTTTCCATAGAATTTTTATTCTTCCACTTATATTGAACTAAGATCAGATAAGAAGAATGGGAAGACAATAACCAGGGTACGGCAGGTTTTGTTTTTTCTTTGGCAAGGGTAATCCTCAAGATTTCCCTTATTAAGAATTCTCGAAGAGAGTATTTTAGCATTTTTACATGCATCGGTAGATCGTGTTCTCTAACGGCTCATTGAACAGTTGACGCTTTTTTCTAGCCATGTAGTCCTTAATTACAATCGTTTACCTTTATCACTGACCATCTTCTCACCCAACAACTTCAACTCAAATTCCATTCTGACGTTTTGTTTTTTCTGAATTTCTTCAAAGCTTATTACTTCCATTTACCCAAATTTTCTCCTAAAGTTATCGAAAATATTTTTGGGTTTTTAACTAGGAGTGAGAAGCAGCTGGAGCAAAATAACACTGTTTCGATGTTGCGAATCTGAGGTGCTCAGAGGAAAATGATGTCATTTTTAAAATTTCAAATTAGTATATTTCTGTTTTCGAAGTTAGTCATTCAAATTAGTTCTAAAAATCTCCTACACAAATAAACGCCAAGCGGTCAACACATACCGTAAAACATGTAAACGAACCCCTCACTCTTAAATTTGA</canonical>
            <polymorphic>CTAAGAAGATTCTACAAGTTTGGGCAGATGACGTTAGAAGGTCTTGTTTTTCGGGTACGTAAGATTAATCCTAAAGTCTAATACTTCTCCCTATTCTTTAAAGATTTTTTCCCTATTCTTTCAGACAATGAAGTTCTCTAAAACTTCCGGAAAACTATCATTTCGTTTTTTTTTGTATGCCAAAACATAGATCATTTCCAAGAAAGGTCTCAATATTTTGAATTTTTGCAAAAAAGAGGGACACACCGAATTCTCATTAAAAACTTCCCGAATCTTCTGTTTATTTACACCCTCCGGCTATTTAAATAAATACAGAGCCTCTTTTTCTAGACAACTCGAAGATGGGTAAGATTTTGGTTTTGATTCTCTTATTCTGTCTTTTCCATAGAATTTTTATTCTTCCACTTATATTGAACTAAGATCAGATAAGAAGAATGGGAAGACAATAACCAGGGTACGGCAGGTTTTGTTTTTTCTTTGGCAAGGGTAATCCTCAAGAYTTCCCTTATTAAGAATTCTCGAAGAGAGTATTTTAGCATTTTTACATGCATCGGTAGATCGTGTTCTCTAACGGCTCATTGAACAGTTGACGCTTTTTTCTAGCCATGTAGTCCTTAATTACAATCGTTTACCTTTATCACTGACCATCTTCTCACCCAACAACTTCAACTCAAATTCCATTCTGACGTTTTGTTTTTTCTGAATTTCTTCAAAGCTTATTACTTCCATTTACCCAAATTTTCTCCTAAAGTTATCGAAAATATTTTTGGGTTTTTAACTAGGAGTGAGAAGCAGCTGGAGCAAAATAACACTGTTTCGATGTTGCGAATCTGAGGTGCTCAGAGGAAAATGATGTCATTTTTAAAATTTCAAATTAGTATATTTCTGTTTTCGAAGTTAGTCATTCAAATTAGTTCTAAAAATCTCCTACACAAATAAACGCCAAGCGGTCAACACATACCGTAAAACATGTAAACGAACCCCTCACTCTTAAATTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAGAATGGGAAGACAATAAC</pcr_primer_p1>
		<pcr_primer_p2>ATGGAATTTGAGTTGAAGTTGT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AAGAAGAATGGGAAGACAATAACCAGGGTACGGCAGGTTTTGTTTTTTCTTTGGCAAGGGTAATCCTCAAGATTTCCCTTATTAAGAATTCTCGAAGAGAGTATTTTAGCATTTTTACATGCATCGGTAGATCGTGTTCTCTAACGGCTCATTGAACAGTTGACGCTTTTTTCTAGCCATGTAGTCCTTAATTACAATCGTTTACCTTTATCACTGACCATCTTCTCACCCAACAACTTCAACTCAAATTCCAT</canonical_amplicon>
		<polymorphic_amplicon>AAGAAGAATGGGAAGACAATAACCAGGGTACGGCAGGTTTTGTTTTTTCTTTGGCAAGGGTAATCCTCAAGAYTTCCCTTATTAAGAATTCTCGAAGAGAGTATTTTAGCATTTTTACATGCATCGGTAGATCGTGTTCTCTAACGGCTCATTGAACAGTTGACGCTTTTTTCTAGCCATGTAGTCCTTAATTACAATCGTTTACCTTTATCACTGACCATCTTCTCACCCAACAACTTCAACTCAAATTCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31298</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>563152</contig_pos>
        <strand>+</strand>
        <context>TCCTCAAGAY[C/T]TCCCTTATTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGGGTACGGCAGGTTTTGTTTTTTCTTTGGCAAGGGTAATCCTCAAGAT</left_flank>
        <right_flank>TCCCTTATTAAGAATTCTCGAAGAGAGTATTTTAGCATTTTTACATGCAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGAAGATTCTACAAGTTTGGGCAGATGACGTTAGAAGGTCTTGTTTTTCGGGTACGTAAGATTAATCCTAAAGTCTAATACTTCTCCCTATTCTTTAAAGATTTTTTCCCTATTCTTTCAGACAATGAAGTTCTCTAAAACTTCCGGAAAACTATCATTTCGTTTTTTTTTGTATGCCAAAACATAGATCATTTCCAAGAAAGGTCTCAATATTTTGAATTTTTGCAAAAAAGAGGGACACACCGAATTCTCATTAAAAACTTCCCGAATCTTCTGTTTATTTACACCCTCCGGCTATTTAAATAAATACAGAGCCTCTTTTTCTAGACAACTCGAAGATGGGTAAGATTTTGGTTTTGATTCTCTTATTCTGTCTTTTCCATAGAATTTTTATTCTTCCACTTATATTGAACTAAGATCAGATAAGAAGAATGGGAAGACAATAACCAGGGTACGGCAGGTTTTGTTTTTTCTTTGGCAAGGGTAATCCTCAAGATTTCCCTTATTAAGAATTCTCGAAGAGAGTATTTTAGCATTTTTACATGCATCGGTAGATCGTGTTCTCTAACGGCTCATTGAACAGTTGACGCTTTTTTCTAGCCATGTAGTCCTTAATTACAATCGTTTACCTTTATCACTGACCATCTTCTCACCCAACAACTTCAACTCAAATTCCATTCTGACGTTTTGTTTTTTCTGAATTTCTTCAAAGCTTATTACTTCCATTTACCCAAATTTTCTCCTAAAGTTATCGAAAATATTTTTGGGTTTTTAACTAGGAGTGAGAAGCAGCTGGAGCAAAATAACACTGTTTCGATGTTGCGAATCTGAGGTGCTCAGAGGAAAATGATGTCATTTTTAAAATTTCAAATTAGTATATTTCTGTTTTCGAAGTTAGTCATTCAAATTAGTTCTAAAAATCTCCTACACAAATAAACGCCAAGCGGTCAACACATACCGTAAAACATGTAAACGAACCCCTCACTCTTAAATTTGAG</canonical>
            <polymorphic>TAAGAAGATTCTACAAGTTTGGGCAGATGACGTTAGAAGGTCTTGTTTTTCGGGTACGTAAGATTAATCCTAAAGTCTAATACTTCTCCCTATTCTTTAAAGATTTTTTCCCTATTCTTTCAGACAATGAAGTTCTCTAAAACTTCCGGAAAACTATCATTTCGTTTTTTTTTGTATGCCAAAACATAGATCATTTCCAAGAAAGGTCTCAATATTTTGAATTTTTGCAAAAAAGAGGGACACACCGAATTCTCATTAAAAACTTCCCGAATCTTCTGTTTATTTACACCCTCCGGCTATTTAAATAAATACAGAGCCTCTTTTTCTAGACAACTCGAAGATGGGTAAGATTTTGGTTTTGATTCTCTTATTCTGTCTTTTCCATAGAATTTTTATTCTTCCACTTATATTGAACTAAGATCAGATAAGAAGAATGGGAAGACAATAACCAGGGTACGGCAGGTTTTGTTTTTTCTTTGGCAAGGGTAATCCTCAAGATYTCCCTTATTAAGAATTCTCGAAGAGAGTATTTTAGCATTTTTACATGCATCGGTAGATCGTGTTCTCTAACGGCTCATTGAACAGTTGACGCTTTTTTCTAGCCATGTAGTCCTTAATTACAATCGTTTACCTTTATCACTGACCATCTTCTCACCCAACAACTTCAACTCAAATTCCATTCTGACGTTTTGTTTTTTCTGAATTTCTTCAAAGCTTATTACTTCCATTTACCCAAATTTTCTCCTAAAGTTATCGAAAATATTTTTGGGTTTTTAACTAGGAGTGAGAAGCAGCTGGAGCAAAATAACACTGTTTCGATGTTGCGAATCTGAGGTGCTCAGAGGAAAATGATGTCATTTTTAAAATTTCAAATTAGTATATTTCTGTTTTCGAAGTTAGTCATTCAAATTAGTTCTAAAAATCTCCTACACAAATAAACGCCAAGCGGTCAACACATACCGTAAAACATGTAAACGAACCCCTCACTCTTAAATTTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAGAATGGGAAGACAATAAC</pcr_primer_p1>
		<pcr_primer_p2>ATGGAATTTGAGTTGAAGTTGT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AAGAAGAATGGGAAGACAATAACCAGGGTACGGCAGGTTTTGTTTTTTCTTTGGCAAGGGTAATCCTCAAGATTTCCCTTATTAAGAATTCTCGAAGAGAGTATTTTAGCATTTTTACATGCATCGGTAGATCGTGTTCTCTAACGGCTCATTGAACAGTTGACGCTTTTTTCTAGCCATGTAGTCCTTAATTACAATCGTTTACCTTTATCACTGACCATCTTCTCACCCAACAACTTCAACTCAAATTCCAT</canonical_amplicon>
		<polymorphic_amplicon>AAGAAGAATGGGAAGACAATAACCAGGGTACGGCAGGTTTTGTTTTTTCTTTGGCAAGGGTAATCCTCAAGATYTCCCTTATTAAGAATTCTCGAAGAGAGTATTTTAGCATTTTTACATGCATCGGTAGATCGTGTTCTCTAACGGCTCATTGAACAGTTGACGCTTTTTTCTAGCCATGTAGTCCTTAATTACAATCGTTTACCTTTATCACTGACCATCTTCTCACCCAACAACTTCAACTCAAATTCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31299</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>563194</contig_pos>
        <strand>+</strand>
        <context>TTAGCATTTT[C/T]ACATGCATCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCAAGATTTCCCTTATTAAGAATTCTCGAAGAGAGTATTTTAGCATTTT</left_flank>
        <right_flank>ACATGCATCGGTAGATCGTGTTCTCTAACGGCTCATTGAACAGTTGACGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTTTTCGGGTACGTAAGATTAATCCTAAAGTCTAATACTTCTCCCTATTCTTTAAAGATTTTTTCCCTATTCTTTCAGACAATGAAGTTCTCTAAAACTTCCGGAAAACTATCATTTCGTTTTTTTTTGTATGCCAAAACATAGATCATTTCCAAGAAAGGTCTCAATATTTTGAATTTTTGCAAAAAAGAGGGACACACCGAATTCTCATTAAAAACTTCCCGAATCTTCTGTTTATTTACACCCTCCGGCTATTTAAATAAATACAGAGCCTCTTTTTCTAGACAACTCGAAGATGGGTAAGATTTTGGTTTTGATTCTCTTATTCTGTCTTTTCCATAGAATTTTTATTCTTCCACTTATATTGAACTAAGATCAGATAAGAAGAATGGGAAGACAATAACCAGGGTACGGCAGGTTTTGTTTTTTCTTTGGCAAGGGTAATCCTCAAGATTTCCCTTATTAAGAATTCTCGAAGAGAGTATTTTAGCATTTTTACATGCATCGGTAGATCGTGTTCTCTAACGGCTCATTGAACAGTTGACGCTTTTTTCTAGCCATGTAGTCCTTAATTACAATCGTTTACCTTTATCACTGACCATCTTCTCACCCAACAACTTCAACTCAAATTCCATTCTGACGTTTTGTTTTTTCTGAATTTCTTCAAAGCTTATTACTTCCATTTACCCAAATTTTCTCCTAAAGTTATCGAAAATATTTTTGGGTTTTTAACTAGGAGTGAGAAGCAGCTGGAGCAAAATAACACTGTTTCGATGTTGCGAATCTGAGGTGCTCAGAGGAAAATGATGTCATTTTTAAAATTTCAAATTAGTATATTTCTGTTTTCGAAGTTAGTCATTCAAATTAGTTCTAAAAATCTCCTACACAAATAAACGCCAAGCGGTCAACACATACCGTAAAACATGTAAACGAACCCCTCACTCTTAAATTTGAGCCAATTTATCTCGTTCCCTGTCAAAGATGAAAGAAAGCTGTC</canonical>
            <polymorphic>TTGTTTTTCGGGTACGTAAGATTAATCCTAAAGTCTAATACTTCTCCCTATTCTTTAAAGATTTTTTCCCTATTCTTTCAGACAATGAAGTTCTCTAAAACTTCCGGAAAACTATCATTTCGTTTTTTTTTGTATGCCAAAACATAGATCATTTCCAAGAAAGGTCTCAATATTTTGAATTTTTGCAAAAAAGAGGGACACACCGAATTCTCATTAAAAACTTCCCGAATCTTCTGTTTATTTACACCCTCCGGCTATTTAAATAAATACAGAGCCTCTTTTTCTAGACAACTCGAAGATGGGTAAGATTTTGGTTTTGATTCTCTTATTCTGTCTTTTCCATAGAATTTTTATTCTTCCACTTATATTGAACTAAGATCAGATAAGAAGAATGGGAAGACAATAACCAGGGTACGGCAGGTTTTGTTTTTTCTTTGGCAAGGGTAATCCTCAAGATTTCCCTTATTAAGAATTCTCGAAGAGAGTATTTTAGCATTTTYACATGCATCGGTAGATCGTGTTCTCTAACGGCTCATTGAACAGTTGACGCTTTTTTCTAGCCATGTAGTCCTTAATTACAATCGTTTACCTTTATCACTGACCATCTTCTCACCCAACAACTTCAACTCAAATTCCATTCTGACGTTTTGTTTTTTCTGAATTTCTTCAAAGCTTATTACTTCCATTTACCCAAATTTTCTCCTAAAGTTATCGAAAATATTTTTGGGTTTTTAACTAGGAGTGAGAAGCAGCTGGAGCAAAATAACACTGTTTCGATGTTGCGAATCTGAGGTGCTCAGAGGAAAATGATGTCATTTTTAAAATTTCAAATTAGTATATTTCTGTTTTCGAAGTTAGTCATTCAAATTAGTTCTAAAAATCTCCTACACAAATAAACGCCAAGCGGTCAACACATACCGTAAAACATGTAAACGAACCCCTCACTCTTAAATTTGAGCCAATTTATCTCGTTCCCTGTCAAAGATGAAAGAAAGCTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAGAATGGGAAGACAATAAC</pcr_primer_p1>
		<pcr_primer_p2>ATGGAATTTGAGTTGAAGTTGT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AAGAAGAATGGGAAGACAATAACCAGGGTACGGCAGGTTTTGTTTTTTCTTTGGCAAGGGTAATCCTCAAGATTTCCCTTATTAAGAATTCTCGAAGAGAGTATTTTAGCATTTTTACATGCATCGGTAGATCGTGTTCTCTAACGGCTCATTGAACAGTTGACGCTTTTTTCTAGCCATGTAGTCCTTAATTACAATCGTTTACCTTTATCACTGACCATCTTCTCACCCAACAACTTCAACTCAAATTCCAT</canonical_amplicon>
		<polymorphic_amplicon>AAGAAGAATGGGAAGACAATAACCAGGGTACGGCAGGTTTTGTTTTTTCTTTGGCAAGGGTAATCCTCAAGATTTCCCTTATTAAGAATTCTCGAAGAGAGTATTTTAGCATTTTYACATGCATCGGTAGATCGTGTTCTCTAACGGCTCATTGAACAGTTGACGCTTTTTTCTAGCCATGTAGTCCTTAATTACAATCGTTTACCTTTATCACTGACCATCTTCTCACCCAACAACTTCAACTCAAATTCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31300</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>575960</contig_pos>
        <strand>+</strand>
        <context>CGGAGTATCG[A/G]TGTGAACTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAGCGCTCGGTCAGGTCATGTATCAGATGAACTGGTTCTCGGAGTATCG</left_flank>
        <right_flank>TGTGAACTTCTGATGGGGCTATTGAAATTTTGAGATCTGGTGTGTTCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATCCGTTGACTACTTTTTGATATCTTTCAAAAGAAGTGAGATATGTAGGCTCCAATCGGACGGTCCGGGTGGCGTTCTATTTAGAGTGTTTACGGTAACCAATTACACCTCCGGGCATCAAACGTTATGTAATCAACAGAGTCGGGTGAATCTTCAGAACTATAGCTACCAATATCGGAACTTATCCTTATTATTTGTTGATCCATTTTCTCTATTTTGGTCAATTTATCGGCATTTTTTTGTAAATATAAAACGAATTGGTTTTTGTAAATATAAAACGAATAAATTTCAAACCTTAAACATCCATACTCGACCGACCGAGCTCGAATAGATCACTCTAAAAGTGACATTTTGAATAATCGGTTTCGTTGAAAACTTTGCAGATTATATCAAAACTCACAAATGTATTCAGCGCTCGGTCAGGTCATGTATCAGATGAACTGGTTCTCGGAGTATCGGTGTGAACTTCTGATGGGGCTATTGAAATTTTGAGATCTGGTGTGTTCTGATATTTCTTCTGAAGTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGG</canonical>
            <polymorphic>GTTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATCCGTTGACTACTTTTTGATATCTTTCAAAAGAAGTGAGATATGTAGGCTCCAATCGGACGGTCCGGGTGGCGTTCTATTTAGAGTGTTTACGGTAACCAATTACACCTCCGGGCATCAAACGTTATGTAATCAACAGAGTCGGGTGAATCTTCAGAACTATAGCTACCAATATCGGAACTTATCCTTATTATTTGTTGATCCATTTTCTCTATTTTGGTCAATTTATCGGCATTTTTTTGTAAATATAAAACGAATTGGTTTTTGTAAATATAAAACGAATAAATTTCAAACCTTAAACATCCATACTCGACCGACCGAGCTCGAATAGATCACTCTAAAAGTGACATTTTGAATAATCGGTTTCGTTGAAAACTTTGCAGATTATATCAAAACTCACAAATGTATTCAGCGCTCGGTCAGGTCATGTATCAGATGAACTGGTTCTCGGAGTATCGRTGTGAACTTCTGATGGGGCTATTGAAATTTTGAGATCTGGTGTGTTCTGATATTTCTTCTGAAGTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>187 156 94 89 79 62 53 41 38 36 33 24 23 21 19 17 13 11 2 2</canonical_bands>
                <polymorphic_bands>187 156 94 89 79 64 53 41 38 36 33 24 23 21 19 17 13 11 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAACGAATAAATTTCAAACCT</pcr_primer_p1>
		<pcr_primer_p2>CAGAAGAAATATCAGAACACACC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TAAAACGAATAAATTTCAAACCTTAAACATCCATACTCGACCGACCGAGCTCGAATAGATCACTCTAAAAGTGACATTTTGAATAATCGGTTTCGTTGAAAACTTTGCAGATTATATCAAAACTCACAAATGTATTCAGCGCTCGGTCAGGTCATGTATCAGATGAACTGGTTCTCGGAGTATCGGTGTGAACTTCTGATGGGGCTATTGAAATTTTGAGATCTGGTGTGTTCTGATATTTCTTCTG</canonical_amplicon>
		<polymorphic_amplicon>TAAAACGAATAAATTTCAAACCTTAAACATCCATACTCGACCGACCGAGCTCGAATAGATCACTCTAAAAGTGACATTTTGAATAATCGGTTTCGTTGAAAACTTTGCAGATTATATCAAAACTCACAAATGTATTCAGCGCTCGGTCAGGTCATGTATCAGATGAACTGGTTCTCGGAGTATCGRTGTGAACTTCTGATGGGGCTATTGAAATTTTGAGATCTGGTGTGTTCTGATATTTCTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31301</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>576074</contig_pos>
        <strand>+</strand>
        <context>TCTTTCCATC[A/G]TCTTCCGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATC</left_flank>
        <right_flank>TCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCTATTTAGAGTGTTTACGGTAACCAATTACACCTCCGGGCATCAAACGTTATGTAATCAACAGAGTCGGGTGAATCTTCAGAACTATAGCTACCAATATCGGAACTTATCCTTATTATTTGTTGATCCATTTTCTCTATTTTGGTCAATTTATCGGCATTTTTTTGTAAATATAAAACGAATTGGTTTTTGTAAATATAAAACGAATAAATTTCAAACCTTAAACATCCATACTCGACCGACCGAGCTCGAATAGATCACTCTAAAAGTGACATTTTGAATAATCGGTTTCGTTGAAAACTTTGCAGATTATATCAAAACTCACAAATGTATTCAGCGCTCGGTCAGGTCATGTATCAGATGAACTGGTTCTCGGAGTATCGGTGTGAACTTCTGATGGGGCTATTGAAATTTTGAGATCTGGTGTGTTCTGATATTTCTTCTGAAGTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCACATCTGA</canonical>
            <polymorphic>GTTCTATTTAGAGTGTTTACGGTAACCAATTACACCTCCGGGCATCAAACGTTATGTAATCAACAGAGTCGGGTGAATCTTCAGAACTATAGCTACCAATATCGGAACTTATCCTTATTATTTGTTGATCCATTTTCTCTATTTTGGTCAATTTATCGGCATTTTTTTGTAAATATAAAACGAATTGGTTTTTGTAAATATAAAACGAATAAATTTCAAACCTTAAACATCCATACTCGACCGACCGAGCTCGAATAGATCACTCTAAAAGTGACATTTTGAATAATCGGTTTCGTTGAAAACTTTGCAGATTATATCAAAACTCACAAATGTATTCAGCGCTCGGTCAGGTCATGTATCAGATGAACTGGTTCTCGGAGTATCGGTGTGAACTTCTGATGGGGCTATTGAAATTTTGAGATCTGGTGTGTTCTGATATTTCTTCTGAAGTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCRTCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCACATCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGTGTTCTGATATTTCTTCTG</pcr_primer_p1>
		<pcr_primer_p2>TCCAATAGAGAAACCAAGATAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTGTGTTCTGATATTTCTTCTGAAGTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGA</canonical_amplicon>
		<polymorphic_amplicon>GGTGTGTTCTGATATTTCTTCTGAAGTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCRTCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31302</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>576089</contig_pos>
        <strand>+</strand>
        <context>CCGTTTTCAA[A/T]TGGGATGCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAA</left_flank>
        <right_flank>TGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTACGGTAACCAATTACACCTCCGGGCATCAAACGTTATGTAATCAACAGAGTCGGGTGAATCTTCAGAACTATAGCTACCAATATCGGAACTTATCCTTATTATTTGTTGATCCATTTTCTCTATTTTGGTCAATTTATCGGCATTTTTTTGTAAATATAAAACGAATTGGTTTTTGTAAATATAAAACGAATAAATTTCAAACCTTAAACATCCATACTCGACCGACCGAGCTCGAATAGATCACTCTAAAAGTGACATTTTGAATAATCGGTTTCGTTGAAAACTTTGCAGATTATATCAAAACTCACAAATGTATTCAGCGCTCGGTCAGGTCATGTATCAGATGAACTGGTTCTCGGAGTATCGGTGTGAACTTCTGATGGGGCTATTGAAATTTTGAGATCTGGTGTGTTCTGATATTTCTTCTGAAGTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATT</canonical>
            <polymorphic>TTTACGGTAACCAATTACACCTCCGGGCATCAAACGTTATGTAATCAACAGAGTCGGGTGAATCTTCAGAACTATAGCTACCAATATCGGAACTTATCCTTATTATTTGTTGATCCATTTTCTCTATTTTGGTCAATTTATCGGCATTTTTTTGTAAATATAAAACGAATTGGTTTTTGTAAATATAAAACGAATAAATTTCAAACCTTAAACATCCATACTCGACCGACCGAGCTCGAATAGATCACTCTAAAAGTGACATTTTGAATAATCGGTTTCGTTGAAAACTTTGCAGATTATATCAAAACTCACAAATGTATTCAGCGCTCGGTCAGGTCATGTATCAGATGAACTGGTTCTCGGAGTATCGGTGTGAACTTCTGATGGGGCTATTGAAATTTTGAGATCTGGTGTGTTCTGATATTTCTTCTGAAGTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAAWTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>200 122 104 103 101 69 63 57 50 43 33 29 14 12</canonical_bands>
                <polymorphic_bands>204 200 122 104 69 63 57 50 43 33 29 14 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGTGTTCTGATATTTCTTCTG</pcr_primer_p1>
		<pcr_primer_p2>TCCAATAGAGAAACCAAGATAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTGTGTTCTGATATTTCTTCTGAAGTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGA</canonical_amplicon>
		<polymorphic_amplicon>GGTGTGTTCTGATATTTCTTCTGAAGTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAAWTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31303</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>576110</contig_pos>
        <strand>+</strand>
        <context>CAGTCGGGCT[A/G]GAAAATGTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCT</left_flank>
        <right_flank>GAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCGGGCATCAAACGTTATGTAATCAACAGAGTCGGGTGAATCTTCAGAACTATAGCTACCAATATCGGAACTTATCCTTATTATTTGTTGATCCATTTTCTCTATTTTGGTCAATTTATCGGCATTTTTTTGTAAATATAAAACGAATTGGTTTTTGTAAATATAAAACGAATAAATTTCAAACCTTAAACATCCATACTCGACCGACCGAGCTCGAATAGATCACTCTAAAAGTGACATTTTGAATAATCGGTTTCGTTGAAAACTTTGCAGATTATATCAAAACTCACAAATGTATTCAGCGCTCGGTCAGGTCATGTATCAGATGAACTGGTTCTCGGAGTATCGGTGTGAACTTCTGATGGGGCTATTGAAATTTTGAGATCTGGTGTGTTCTGATATTTCTTCTGAAGTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGA</canonical>
            <polymorphic>TCCGGGCATCAAACGTTATGTAATCAACAGAGTCGGGTGAATCTTCAGAACTATAGCTACCAATATCGGAACTTATCCTTATTATTTGTTGATCCATTTTCTCTATTTTGGTCAATTTATCGGCATTTTTTTGTAAATATAAAACGAATTGGTTTTTGTAAATATAAAACGAATAAATTTCAAACCTTAAACATCCATACTCGACCGACCGAGCTCGAATAGATCACTCTAAAAGTGACATTTTGAATAATCGGTTTCGTTGAAAACTTTGCAGATTATATCAAAACTCACAAATGTATTCAGCGCTCGGTCAGGTCATGTATCAGATGAACTGGTTCTCGGAGTATCGGTGTGAACTTCTGATGGGGCTATTGAAATTTTGAGATCTGGTGTGTTCTGATATTTCTTCTGAAGTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTRGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>498 414 88</canonical_bands>
                <polymorphic_bands>586 414</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGTGTTCTGATATTTCTTCTG</pcr_primer_p1>
		<pcr_primer_p2>TCCAATAGAGAAACCAAGATAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTGTGTTCTGATATTTCTTCTGAAGTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGA</canonical_amplicon>
		<polymorphic_amplicon>GGTGTGTTCTGATATTTCTTCTGAAGTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTRGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31304</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>576129</contig_pos>
        <strand>+</strand>
        <context>AAAATATAGA[G/T]TTGTGACAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGA</left_flank>
        <right_flank>TTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAATCAACAGAGTCGGGTGAATCTTCAGAACTATAGCTACCAATATCGGAACTTATCCTTATTATTTGTTGATCCATTTTCTCTATTTTGGTCAATTTATCGGCATTTTTTTGTAAATATAAAACGAATTGGTTTTTGTAAATATAAAACGAATAAATTTCAAACCTTAAACATCCATACTCGACCGACCGAGCTCGAATAGATCACTCTAAAAGTGACATTTTGAATAATCGGTTTCGTTGAAAACTTTGCAGATTATATCAAAACTCACAAATGTATTCAGCGCTCGGTCAGGTCATGTATCAGATGAACTGGTTCTCGGAGTATCGGTGTGAACTTCTGATGGGGCTATTGAAATTTTGAGATCTGGTGTGTTCTGATATTTCTTCTGAAGTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAATTTAACCATAAA</canonical>
            <polymorphic>GTAATCAACAGAGTCGGGTGAATCTTCAGAACTATAGCTACCAATATCGGAACTTATCCTTATTATTTGTTGATCCATTTTCTCTATTTTGGTCAATTTATCGGCATTTTTTTGTAAATATAAAACGAATTGGTTTTTGTAAATATAAAACGAATAAATTTCAAACCTTAAACATCCATACTCGACCGACCGAGCTCGAATAGATCACTCTAAAAGTGACATTTTGAATAATCGGTTTCGTTGAAAACTTTGCAGATTATATCAAAACTCACAAATGTATTCAGCGCTCGGTCAGGTCATGTATCAGATGAACTGGTTCTCGGAGTATCGGTGTGAACTTCTGATGGGGCTATTGAAATTTTGAGATCTGGTGTGTTCTGATATTTCTTCTGAAGTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGAKTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAATTTAACCATAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGTGTTCTGATATTTCTTCTG</pcr_primer_p1>
		<pcr_primer_p2>TCCAATAGAGAAACCAAGATAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTGTGTTCTGATATTTCTTCTGAAGTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGA</canonical_amplicon>
		<polymorphic_amplicon>GGTGTGTTCTGATATTTCTTCTGAAGTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGAKTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31305</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>576199</contig_pos>
        <strand>+</strand>
        <context>GAATTTTCTA[G/T]TTACAAAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTA</left_flank>
        <right_flank>TTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATCCATTTTCTCTATTTTGGTCAATTTATCGGCATTTTTTTGTAAATATAAAACGAATTGGTTTTTGTAAATATAAAACGAATAAATTTCAAACCTTAAACATCCATACTCGACCGACCGAGCTCGAATAGATCACTCTAAAAGTGACATTTTGAATAATCGGTTTCGTTGAAAACTTTGCAGATTATATCAAAACTCACAAATGTATTCAGCGCTCGGTCAGGTCATGTATCAGATGAACTGGTTCTCGGAGTATCGGTGTGAACTTCTGATGGGGCTATTGAAATTTTGAGATCTGGTGTGTTCTGATATTTCTTCTGAAGTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAATTTAACCATAAATAATATTTCTCATAACAAAAATTCGTTATAAAAGTTTAATTTTTTTTCAATTCCATAGACTATTGGTTCA</canonical>
            <polymorphic>TGATCCATTTTCTCTATTTTGGTCAATTTATCGGCATTTTTTTGTAAATATAAAACGAATTGGTTTTTGTAAATATAAAACGAATAAATTTCAAACCTTAAACATCCATACTCGACCGACCGAGCTCGAATAGATCACTCTAAAAGTGACATTTTGAATAATCGGTTTCGTTGAAAACTTTGCAGATTATATCAAAACTCACAAATGTATTCAGCGCTCGGTCAGGTCATGTATCAGATGAACTGGTTCTCGGAGTATCGGTGTGAACTTCTGATGGGGCTATTGAAATTTTGAGATCTGGTGTGTTCTGATATTTCTTCTGAAGTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAKTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAATTTAACCATAAATAATATTTCTCATAACAAAAATTCGTTATAAAAGTTTAATTTTTTTTCAATTCCATAGACTATTGGTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 409 88</canonical_bands>
                <polymorphic_bands>591 409</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 287 145 67</canonical_bands>
                <polymorphic_bands>568 287 145</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAAACTGTCCTTGTGAACT</pcr_primer_p1>
		<pcr_primer_p2>ACATCGCTGAAATTTCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAKTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31306</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>576211</contig_pos>
        <strand>+</strand>
        <context>TACAAAACAT[C/T]GGGGGGGGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACAT</left_flank>
        <right_flank>GGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTATTTTGGTCAATTTATCGGCATTTTTTTGTAAATATAAAACGAATTGGTTTTTGTAAATATAAAACGAATAAATTTCAAACCTTAAACATCCATACTCGACCGACCGAGCTCGAATAGATCACTCTAAAAGTGACATTTTGAATAATCGGTTTCGTTGAAAACTTTGCAGATTATATCAAAACTCACAAATGTATTCAGCGCTCGGTCAGGTCATGTATCAGATGAACTGGTTCTCGGAGTATCGGTGTGAACTTCTGATGGGGCTATTGAAATTTTGAGATCTGGTGTGTTCTGATATTTCTTCTGAAGTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAATTTAACCATAAATAATATTTCTCATAACAAAAATTCGTTATAAAAGTTTAATTTTTTTTCAATTCCATAGACTATTGGTTCACAAACCAGTCAA</canonical>
            <polymorphic>TCTATTTTGGTCAATTTATCGGCATTTTTTTGTAAATATAAAACGAATTGGTTTTTGTAAATATAAAACGAATAAATTTCAAACCTTAAACATCCATACTCGACCGACCGAGCTCGAATAGATCACTCTAAAAGTGACATTTTGAATAATCGGTTTCGTTGAAAACTTTGCAGATTATATCAAAACTCACAAATGTATTCAGCGCTCGGTCAGGTCATGTATCAGATGAACTGGTTCTCGGAGTATCGGTGTGAACTTCTGATGGGGCTATTGAAATTTTGAGATCTGGTGTGTTCTGATATTTCTTCTGAAGTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATYGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAATTTAACCATAAATAATATTTCTCATAACAAAAATTCGTTATAAAAGTTTAATTTTTTTTCAATTCCATAGACTATTGGTTCACAAACCAGTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>313 281 216 105 85</canonical_bands>
                <polymorphic_bands>594 216 105 85</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAAACTGTCCTTGTGAACT</pcr_primer_p1>
		<pcr_primer_p2>ACATCGCTGAAATTTCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATYGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31307</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>576253</contig_pos>
        <strand></strand>
        <context>TTGGATTTTT[C/T]TGGAAAATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTT</left_flank>
        <right_flank>TGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGAATTGGTTTTTGTAAATATAAAACGAATAAATTTCAAACCTTAAACATCCATACTCGACCGACCGAGCTCGAATAGATCACTCTAAAAGTGACATTTTGAATAATCGGTTTCGTTGAAAACTTTGCAGATTATATCAAAACTCACAAATGTATTCAGCGCTCGGTCAGGTCATGTATCAGATGAACTGGTTCTCGGAGTATCGGTGTGAACTTCTGATGGGGCTATTGAAATTTTGAGATCTGGTGTGTTCTGATATTTCTTCTGAAGTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAATTTAACCATAAATAATATTTCTCATAACAAAAATTCGTTATAAAAGTTTAATTTTTTTTCAATTCCATAGACTATTGGTTCACAAACCAGTCAAAAAAATCTTTTGTTATTTTCATCTGAAAATCCAGCCGAAAAC</canonical>
            <polymorphic>ACGAATTGGTTTTTGTAAATATAAAACGAATAAATTTCAAACCTTAAACATCCATACTCGACCGACCGAGCTCGAATAGATCACTCTAAAAGTGACATTTTGAATAATCGGTTTCGTTGAAAACTTTGCAGATTATATCAAAACTCACAAATGTATTCAGCGCTCGGTCAGGTCATGTATCAGATGAACTGGTTCTCGGAGTATCGGTGTGAACTTCTGATGGGGCTATTGAAATTTTGAGATCTGGTGTGTTCTGATATTTCTTCTGAAGTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTYTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAATTTAACCATAAATAATATTTCTCATAACAAAAATTCGTTATAAAAGTTTAATTTTTTTTCAATTCCATAGACTATTGGTTCACAAACCAGTCAAAAAAATCTTTTGTTATTTTCATCTGAAAATCCAGCCGAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>276 252 197 161 87 27</canonical_bands>
                <polymorphic_bands>449 276 161 87 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAAACTGTCCTTGTGAACT</pcr_primer_p1>
		<pcr_primer_p2>ACATCGCTGAAATTTCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTYTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31308</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>576277</contig_pos>
        <strand>+</strand>
        <context>TGTGGAGATT[A/C]TCTCTTCCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATT</left_flank>
        <right_flank>TCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGAATAAATTTCAAACCTTAAACATCCATACTCGACCGACCGAGCTCGAATAGATCACTCTAAAAGTGACATTTTGAATAATCGGTTTCGTTGAAAACTTTGCAGATTATATCAAAACTCACAAATGTATTCAGCGCTCGGTCAGGTCATGTATCAGATGAACTGGTTCTCGGAGTATCGGTGTGAACTTCTGATGGGGCTATTGAAATTTTGAGATCTGGTGTGTTCTGATATTTCTTCTGAAGTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAATTTAACCATAAATAATATTTCTCATAACAAAAATTCGTTATAAAAGTTTAATTTTTTTTCAATTCCATAGACTATTGGTTCACAAACCAGTCAAAAAAATCTTTTGTTATTTTCATCTGAAAATCCAGCCGAAAACCAAATGAACACTTAAAAATTTTTA</canonical>
            <polymorphic>AACGAATAAATTTCAAACCTTAAACATCCATACTCGACCGACCGAGCTCGAATAGATCACTCTAAAAGTGACATTTTGAATAATCGGTTTCGTTGAAAACTTTGCAGATTATATCAAAACTCACAAATGTATTCAGCGCTCGGTCAGGTCATGTATCAGATGAACTGGTTCTCGGAGTATCGGTGTGAACTTCTGATGGGGCTATTGAAATTTTGAGATCTGGTGTGTTCTGATATTTCTTCTGAAGTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTMTCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAATTTAACCATAAATAATATTTCTCATAACAAAAATTCGTTATAAAAGTTTAATTTTTTTTCAATTCCATAGACTATTGGTTCACAAACCAGTCAAAAAAATCTTTTGTTATTTTCATCTGAAAATCCAGCCGAAAACCAAATGAACACTTAAAAATTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGATCTATCTTGGTTTCTCTAT</pcr_primer_p1>
		<pcr_primer_p2>GATCTACCTTCCGATCTACTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATC</canonical_amplicon>
		<polymorphic_amplicon>GGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTMTCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31309</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>576305</contig_pos>
        <strand>+</strand>
        <context>TCGTCTTCCG[A/G]TTTCGACAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCG</left_flank>
        <right_flank>TTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATACTCGACCGACCGAGCTCGAATAGATCACTCTAAAAGTGACATTTTGAATAATCGGTTTCGTTGAAAACTTTGCAGATTATATCAAAACTCACAAATGTATTCAGCGCTCGGTCAGGTCATGTATCAGATGAACTGGTTCTCGGAGTATCGGTGTGAACTTCTGATGGGGCTATTGAAATTTTGAGATCTGGTGTGTTCTGATATTTCTTCTGAAGTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAATTTAACCATAAATAATATTTCTCATAACAAAAATTCGTTATAAAAGTTTAATTTTTTTTCAATTCCATAGACTATTGGTTCACAAACCAGTCAAAAAAATCTTTTGTTATTTTCATCTGAAAATCCAGCCGAAAACCAAATGAACACTTAAAAATTTTTAGTAGTTTACCAAAGTCAACATTTTGTAG</canonical>
            <polymorphic>CATACTCGACCGACCGAGCTCGAATAGATCACTCTAAAAGTGACATTTTGAATAATCGGTTTCGTTGAAAACTTTGCAGATTATATCAAAACTCACAAATGTATTCAGCGCTCGGTCAGGTCATGTATCAGATGAACTGGTTCTCGGAGTATCGGTGTGAACTTCTGATGGGGCTATTGAAATTTTGAGATCTGGTGTGTTCTGATATTTCTTCTGAAGTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGRTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAATTTAACCATAAATAATATTTCTCATAACAAAAATTCGTTATAAAAGTTTAATTTTTTTTCAATTCCATAGACTATTGGTTCACAAACCAGTCAAAAAAATCTTTTGTTATTTTCATCTGAAAATCCAGCCGAAAACCAAATGAACACTTAAAAATTTTTAGTAGTTTACCAAAGTCAACATTTTGTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 359 138</canonical_bands>
                <polymorphic_bands>641 359</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGATCTATCTTGGTTTCTCTAT</pcr_primer_p1>
		<pcr_primer_p2>GATCTACCTTCCGATCTACTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATC</canonical_amplicon>
		<polymorphic_amplicon>GGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGRTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31310</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>576493</contig_pos>
        <strand></strand>
        <context>CTGAATTTTT[A/T]WGAAAACGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTT</left_flank>
        <right_flank>AGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATCTGGTGTGTTCTGATATTTCTTCTGAAGTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAATTTAACCATAAATAATATTTCTCATAACAAAAATTCGTTATAAAAGTTTAATTTTTTTTCAATTCCATAGACTATTGGTTCACAAACCAGTCAAAAAAATCTTTTGTTATTTTCATCTGAAAATCCAGCCGAAAACCAAATGAACACTTAAAAATTTTTAGTAGTTTACCAAAGTCAACATTTTGTAGTCCAATTCATTGTTCCGGCAATGTATGTTTCCTGATTTTACCGAAGTTACTATAGTGAAATTTGATGAGCAATTCAAAATCAACGGTTCAACAAATTCTCCACCGGTTTTTGAAAACATTACCCTTGTTAAGAACTGTTTGACCTTTATTCAAAAATTACAAATCAATGAATTCAAACAAACATTTAT</canonical>
            <polymorphic>GATCTGGTGTGTTCTGATATTTCTTCTGAAGTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTWAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAATTTAACCATAAATAATATTTCTCATAACAAAAATTCGTTATAAAAGTTTAATTTTTTTTCAATTCCATAGACTATTGGTTCACAAACCAGTCAAAAAAATCTTTTGTTATTTTCATCTGAAAATCCAGCCGAAAACCAAATGAACACTTAAAAATTTTTAGTAGTTTACCAAAGTCAACATTTTGTAGTCCAATTCATTGTTCCGGCAATGTATGTTTCCTGATTTTACCGAAGTTACTATAGTGAAATTTGATGAGCAATTCAAAATCAACGGTTCAACAAATTCTCCACCGGTTTTTGAAAACATTACCCTTGTTAAGAACTGTTTGACCTTTATTCAAAAATTACAAATCAATGAATTCAAACAAACATTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>368 168 130 128 100 60 46</canonical_bands>
                <polymorphic_bands>368 258 168 100 60 46</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATGTTAGCGATCATACTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>TGGTTAAATTACTGTTCATGTCTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAATTTAACCA</canonical_amplicon>
		<polymorphic_amplicon>GATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTWAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAATTTAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31311</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>576494</contig_pos>
        <strand>+</strand>
        <context>TGAATTTTTW[A/T]GAAAACGGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTA</left_flank>
        <right_flank>GAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTGGTGTGTTCTGATATTTCTTCTGAAGTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAATTTAACCATAAATAATATTTCTCATAACAAAAATTCGTTATAAAAGTTTAATTTTTTTTCAATTCCATAGACTATTGGTTCACAAACCAGTCAAAAAAATCTTTTGTTATTTTCATCTGAAAATCCAGCCGAAAACCAAATGAACACTTAAAAATTTTTAGTAGTTTACCAAAGTCAACATTTTGTAGTCCAATTCATTGTTCCGGCAATGTATGTTTCCTGATTTTACCGAAGTTACTATAGTGAAATTTGATGAGCAATTCAAAATCAACGGTTCAACAAATTCTCCACCGGTTTTTGAAAACATTACCCTTGTTAAGAACTGTTTGACCTTTATTCAAAAATTACAAATCAATGAATTCAAACAAACATTTATT</canonical>
            <polymorphic>ATCTGGTGTGTTCTGATATTTCTTCTGAAGTCATCTGGAAGATTCTGAGTAGGGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAWGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAATTTAACCATAAATAATATTTCTCATAACAAAAATTCGTTATAAAAGTTTAATTTTTTTTCAATTCCATAGACTATTGGTTCACAAACCAGTCAAAAAAATCTTTTGTTATTTTCATCTGAAAATCCAGCCGAAAACCAAATGAACACTTAAAAATTTTTAGTAGTTTACCAAAGTCAACATTTTGTAGTCCAATTCATTGTTCCGGCAATGTATGTTTCCTGATTTTACCGAAGTTACTATAGTGAAATTTGATGAGCAATTCAAAATCAACGGTTCAACAAATTCTCCACCGGTTTTTGAAAACATTACCCTTGTTAAGAACTGTTTGACCTTTATTCAAAAATTACAAATCAATGAATTCAAACAAACATTTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>367 168 130 128 100 61 46</canonical_bands>
                <polymorphic_bands>367 258 168 100 61 46</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATGTTAGCGATCATACTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>TGGTTAAATTACTGTTCATGTCTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAATTTAACCA</canonical_amplicon>
		<polymorphic_amplicon>GATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAWGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAATTTAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31312</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>576546</contig_pos>
        <strand>+</strand>
        <context>GGTGAGTTTG[C/T]CAATAAATGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTG</left_flank>
        <right_flank>CAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAATTTAACCATAAATAATATTTCTCATAACAAAAATTCGTTATAAAAGTTTAATTTTTTTTCAATTCCATAGACTATTGGTTCACAAACCAGTCAAAAAAATCTTTTGTTATTTTCATCTGAAAATCCAGCCGAAAACCAAATGAACACTTAAAAATTTTTAGTAGTTTACCAAAGTCAACATTTTGTAGTCCAATTCATTGTTCCGGCAATGTATGTTTCCTGATTTTACCGAAGTTACTATAGTGAAATTTGATGAGCAATTCAAAATCAACGGTTCAACAAATTCTCCACCGGTTTTTGAAAACATTACCCTTGTTAAGAACTGTTTGACCTTTATTCAAAAATTACAAATCAATGAATTCAAACAAACATTTATTTTCAAACATTATGTTCACAAAACAAACTGTTTCGAGATTAATTCCTCAAATT</canonical>
            <polymorphic>GGTTTTCTTCCAGAACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGYCAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAATTTAACCATAAATAATATTTCTCATAACAAAAATTCGTTATAAAAGTTTAATTTTTTTTCAATTCCATAGACTATTGGTTCACAAACCAGTCAAAAAAATCTTTTGTTATTTTCATCTGAAAATCCAGCCGAAAACCAAATGAACACTTAAAAATTTTTAGTAGTTTACCAAAGTCAACATTTTGTAGTCCAATTCATTGTTCCGGCAATGTATGTTTCCTGATTTTACCGAAGTTACTATAGTGAAATTTGATGAGCAATTCAAAATCAACGGTTCAACAAATTCTCCACCGGTTTTTGAAAACATTACCCTTGTTAAGAACTGTTTGACCTTTATTCAAAAATTACAAATCAATGAATTCAAACAAACATTTATTTTCAAACATTATGTTCACAAAACAAACTGTTTCGAGATTAATTCCTCAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNTGG</site>
                <isoschizomers>
                    <enzyme>AccB7I</enzyme>
                    <enzyme>PflBI</enzyme>
                    <enzyme>PflMI</enzyme>
                    <enzyme>Van91I</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGTAGATCGGAAGGTAGATCA</pcr_primer_p1>
		<pcr_primer_p2>GAACCAATAGTCTATGGAATTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAATTTAACCATAAATAATATTTCTCATAACAAAAATTCGTTATAAAAGTTTAATTTTTTTTCAATTCCATAGACTATTGGTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGYCAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAATTTAACCATAAATAATATTTCTCATAACAAAAATTCGTTATAAAAGTTTAATTTTTTTTCAATTCCATAGACTATTGGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31313</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>576559</contig_pos>
        <strand>+</strand>
        <context>ATAAATGGAA[A/C]AAAGCGCRCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAA</left_flank>
        <right_flank>AAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAATTTAACCATAAATAATATTTCTCATAACAAAAATTCGTTATAAAAGTTTAATTTTTTTTCAATTCCATAGACTATTGGTTCACAAACCAGTCAAAAAAATCTTTTGTTATTTTCATCTGAAAATCCAGCCGAAAACCAAATGAACACTTAAAAATTTTTAGTAGTTTACCAAAGTCAACATTTTGTAGTCCAATTCATTGTTCCGGCAATGTATGTTTCCTGATTTTACCGAAGTTACTATAGTGAAATTTGATGAGCAATTCAAAATCAACGGTTCAACAAATTCTCCACCGGTTTTTGAAAACATTACCCTTGTTAAGAACTGTTTGACCTTTATTCAAAAATTACAAATCAATGAATTCAAACAAACATTTATTTTCAAACATTATGTTCACAAAACAAACTGTTTCGAGATTAATTCCTCAAATTGTTATTTTATTCT</canonical>
            <polymorphic>AACATCTTTCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAMAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAATTTAACCATAAATAATATTTCTCATAACAAAAATTCGTTATAAAAGTTTAATTTTTTTTCAATTCCATAGACTATTGGTTCACAAACCAGTCAAAAAAATCTTTTGTTATTTTCATCTGAAAATCCAGCCGAAAACCAAATGAACACTTAAAAATTTTTAGTAGTTTACCAAAGTCAACATTTTGTAGTCCAATTCATTGTTCCGGCAATGTATGTTTCCTGATTTTACCGAAGTTACTATAGTGAAATTTGATGAGCAATTCAAAATCAACGGTTCAACAAATTCTCCACCGGTTTTTGAAAACATTACCCTTGTTAAGAACTGTTTGACCTTTATTCAAAAATTACAAATCAATGAATTCAAACAAACATTTATTTTCAAACATTATGTTCACAAAACAAACTGTTTCGAGATTAATTCCTCAAATTGTTATTTTATTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGTAGATCGGAAGGTAGATCA</pcr_primer_p1>
		<pcr_primer_p2>GAACCAATAGTCTATGGAATTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAATTTAACCATAAATAATATTTCTCATAACAAAAATTCGTTATAAAAGTTTAATTTTTTTTCAATTCCATAGACTATTGGTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAMAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAATTTAACCATAAATAATATTTCTCATAACAAAAATTCGTTATAAAAGTTTAATTTTTTTTCAATTCCATAGACTATTGGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31314</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>576567</contig_pos>
        <strand>+</strand>
        <context>AAMAAAGCGC[A/G]CATCTGACTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGC</left_flank>
        <right_flank>CATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAATTTAACCATAAATAATATTTCTCATAACAAAAATTCGTTATAAAAGTTTAATTTTTTTTCAATTCCATAGACTATTGGTTCACAAACCAGTCAAAAAAATCTTTTGTTATTTTCATCTGAAAATCCAGCCGAAAACCAAATGAACACTTAAAAATTTTTAGTAGTTTACCAAAGTCAACATTTTGTAGTCCAATTCATTGTTCCGGCAATGTATGTTTCCTGATTTTACCGAAGTTACTATAGTGAAATTTGATGAGCAATTCAAAATCAACGGTTCAACAAATTCTCCACCGGTTTTTGAAAACATTACCCTTGTTAAGAACTGTTTGACCTTTATTCAAAAATTACAAATCAATGAATTCAAACAAACATTTATTTTCAAACATTATGTTCACAAAACAAACTGTTTCGAGATTAATTCCTCAAATTGTTATTTTATTCTTTACTGAT</canonical>
            <polymorphic>TCCATCATCTTCCGTTTTCAATTGGGATGCACCAGTCGGGCTAGAAAATGTAAAATATAGATTTGTGACAAAAAAAGAAACTGTCCTTGTGAACTCCCGGTTTTTTAGATGACACTAAGTAGAATTTTCTAGTTACAAAACATGGGGGGGGGGGGGATCTATCTTGGTTTCTCTATTGGATTTTTCTGGAAAATTCAAATGTGGAGATTATCTCTTCCATTTTATTATCGTCTTCCGGTTTCGACAGGAATTTTTCGCTGAAAATTTGGACATATATAGATGAAAGATAAACTTTAAGAAGAAGAAATTTCAGCGATGTTAGCGATCATACTTTTTGTAAAAAATCAATAAAAATGGTGTTTCCAAGAAATTGAAAAGTGGAAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCRCATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAATTTAACCATAAATAATATTTCTCATAACAAAAATTCGTTATAAAAGTTTAATTTTTTTTCAATTCCATAGACTATTGGTTCACAAACCAGTCAAAAAAATCTTTTGTTATTTTCATCTGAAAATCCAGCCGAAAACCAAATGAACACTTAAAAATTTTTAGTAGTTTACCAAAGTCAACATTTTGTAGTCCAATTCATTGTTCCGGCAATGTATGTTTCCTGATTTTACCGAAGTTACTATAGTGAAATTTGATGAGCAATTCAAAATCAACGGTTCAACAAATTCTCCACCGGTTTTTGAAAACATTACCCTTGTTAAGAACTGTTTGACCTTTATTCAAAAATTACAAATCAATGAATTCAAACAAACATTTATTTTCAAACATTATGTTCACAAAACAAACTGTTTCGAGATTAATTCCTCAAATTGTTATTTTATTCTTTACTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>156 132 104 99 89 79 64 56 45 36 31 28 24 23 21 13</canonical_bands>
                <polymorphic_bands>160 156 104 99 89 79 64 56 45 36 31 24 23 21 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGTAGATCGGAAGGTAGATCA</pcr_primer_p1>
		<pcr_primer_p2>GAACCAATAGTCTATGGAATTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCACATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAATTTAACCATAAATAATATTTCTCATAACAAAAATTCGTTATAAAAGTTTAATTTTTTTTCAATTCCATAGACTATTGGTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAGTAGATCGGAAGGTAGATCAAAAAGATTTTTCTGAATTTTTAAGAAAACGGGTCCAGAACAGCAAGAAGCATGTGATTTCGATGGGTGAGTTTGCCAATAAATGGAAAAAAGCGCRCATCTGACTCATAAAAAACATTTTCTGGAATGAAAAGACATGAACAGTAATTTAACCATAAATAATATTTCTCATAACAAAAATTCGTTATAAAAGTTTAATTTTTTTTCAATTCCATAGACTATTGGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31315</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>614106</contig_pos>
        <strand></strand>
        <context>CAGCGAGACT[G/A]TCTTTTGTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTGGTTCCTTTTATGAGCTTCTAATAACCTAGAATGTTCCAGCGAGACT</left_flank>
        <right_flank>TCTTTTGTCGTTACTTTGATTGCAAGAAAAAGGAAATGGTCCGCCAGATG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAACATTGGACGAAGTACCCCACAAATCAGTATTCAAACAGTGGATAGCCAATAAGAATGTCGAACTCAATGAAACTGATTTCATAGGAGAGGAGAAGCCAACGATTTTAGGAGCTTTCGCTTATAAGAATTATATTGCGGTCACTTTATCGGCCAGAAACTTCTCCACGTTGGTTTTAGGAGTATATTGTGGTCGGTCGAAAGTCTTCAATCGCCGACCGACCGCAGACCCAGCCGACGGACCGCCGACCGAACTTGAGCATTTGCGCGTCAACATGCCAGAGAGTGTTTACGTACGAATCATGTTCTGATTTACAAAATCAAAAAAATGTGTAGCGCATCGTAAAATAAAATGCTGCGTACGTAGACACTCTCTGGTTGGTTGACAGTCAAATGTACGTAGTCGGTCAGCATGGCCAGTTACCGGTCGGCTGGGTCGGCGGTCTTAATTGGTTCCTTTTATGAGCTTCTAATAACCTAGAATGTTCCAGCGAGACTGTCTTTTGTCGTTACTTTGATTGCAAGAAAAAGGAAATGGTCCGCCAGATGAAATCCTTCGTCTTTCCTGAATCTACAGTATACTGTCCAAGACGTGCCGGAGCAAACTATATTTCTATCAGTGAATCACTCGAAGAAAAAGTTCAAACCCCAGTGAAAATCCAAGGACGGGCTCCGAAACACTTTTTCTCCGTCTGTGTAACTCTGGAAAATCACGAGGAGAACATGCTGAAAATCGCTAATTCATTGAATACTACAAACTACAAGGCTCTACTTTCTTCCATGTTTACTTGAAAAATACGAGTCATTATCAAAGGGTATTACTAGATGATTATATCAGATCAGGGGATATTCGAGTTGTGAAAGTAGCTGAAGACGTTTCGGATCAGGTTCAAGCGAATGTGAGTTTTTCTGAGAGAAGAGAAATTTGAAGCAGCCGGTTTCCCTTTTCAGGATTGTCTTCATCGAAGCAGGTATCTCTCCAAATGGACGGCGTTTTTG</canonical>
            <polymorphic>GTAACATTGGACGAAGTACCCCACAAATCAGTATTCAAACAGTGGATAGCCAATAAGAATGTCGAACTCAATGAAACTGATTTCATAGGAGAGGAGAAGCCAACGATTTTAGGAGCTTTCGCTTATAAGAATTATATTGCGGTCACTTTATCGGCCAGAAACTTCTCCACGTTGGTTTTAGGAGTATATTGTGGTCGGTCGAAAGTCTTCAATCGCCGACCGACCGCAGACCCAGCCGACGGACCGCCGACCGAACTTGAGCATTTGCGCGTCAACATGCCAGAGAGTGTTTACGTACGAATCATGTTCTGATTTACAAAATCAAAAAAATGTGTAGCGCATCGTAAAATAAAATGCTGCGTACGTAGACACTCTCTGGTTGGTTGACAGTCAAATGTACGTAGTCGGTCAGCATGGCCAGTTACCGGTCGGCTGGGTCGGCGGTCTTAATTGGTTCCTTTTATGAGCTTCTAATAACCTAGAATGTTCCAGCGAGACTRTCTTTTGTCGTTACTTTGATTGCAAGAAAAAGGAAATGGTCCGCCAGATGAAATCCTTCGTCTTTCCTGAATCTACAGTATACTGTCCAAGACGTGCCGGAGCAAACTATATTTCTATCAGTGAATCACTCGAAGAAAAAGTTCAAACCCCAGTGAAAATCCAAGGACGGGCTCCGAAACACTTTTTCTCCGTCTGTGTAACTCTGGAAAATCACGAGGAGAACATGCTGAAAATCGCTAATTCATTGAATACTACAAACTACAAGGCTCTACTTTCTTCCATGTTTACTTGAAAAATACGAGTCATTATCAAAGGGTATTACTAGATGATTATATCAGATCAGGGGATATTCGAGTTGTGAAAGTAGCTGAAGACGTTTCGGATCAGGTTCAAGCGAATGTGAGTTTTTCTGAGAGAAGAGAAATTTGAAGCAGCCGGTTTCCCTTTTCAGGATTGTCTTCATCGAAGCAGGTATCTCTCCAAATGGACGGCGTTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>416 348 110 78 41 7</canonical_bands>
                <polymorphic_bands>416 348 188 41 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATGTACGTAGTCGGTCAG</pcr_primer_p1>
		<pcr_primer_p2>GAACTTTTTCTTCGAGTGATTC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CAAATGTACGTAGTCGGTCAGCATGGCCAGTTACCGGTCGGCTGGGTCGGCGGTCTTAATTGGTTCCTTTTATGAGCTTCTAATAACCTAGAATGTTCCAGCGAGACTGTCTTTTGTCGTTACTTTGATTGCAAGAAAAAGGAAATGGTCCGCCAGATGAAATCCTTCGTCTTTCCTGAATCTACAGTATACTGTCCAAGACGTGCCGGAGCAAACTATATTTCTATCAGTGAATCACTCGAAGAAAAAGTTC</canonical_amplicon>
		<polymorphic_amplicon>CAAATGTACGTAGTCGGTCAGCATGGCCAGTTACCGGTCGGCTGGGTCGGCGGTCTTAATTGGTTCCTTTTATGAGCTTCTAATAACCTAGAATGTTCCAGCGAGACTRTCTTTTGTCGTTACTTTGATTGCAAGAAAAAGGAAATGGTCCGCCAGATGAAATCCTTCGTCTTTCCTGAATCTACAGTATACTGTCCAAGACGTGCCGGAGCAAACTATATTTCTATCAGTGAATCACTCGAAGAAAAAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31316</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>614322</contig_pos>
        <strand></strand>
        <context>GGAAAATCAC[G/A]AGGAGAACAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GACGGGCTCCGAAACACTTTTTCTCCGTCTGTGTAACTCTGGAAAATCAC</left_flank>
        <right_flank>AGGAGAACATGCTGAAAATCGCTAATTCATTGAATACTACAAACTACAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGACCGACCGCAGACCCAGCCGACGGACCGCCGACCGAACTTGAGCATTTGCGCGTCAACATGCCAGAGAGTGTTTACGTACGAATCATGTTCTGATTTACAAAATCAAAAAAATGTGTAGCGCATCGTAAAATAAAATGCTGCGTACGTAGACACTCTCTGGTTGGTTGACAGTCAAATGTACGTAGTCGGTCAGCATGGCCAGTTACCGGTCGGCTGGGTCGGCGGTCTTAATTGGTTCCTTTTATGAGCTTCTAATAACCTAGAATGTTCCAGCGAGACTGTCTTTTGTCGTTACTTTGATTGCAAGAAAAAGGAAATGGTCCGCCAGATGAAATCCTTCGTCTTTCCTGAATCTACAGTATACTGTCCAAGACGTGCCGGAGCAAACTATATTTCTATCAGTGAATCACTCGAAGAAAAAGTTCAAACCCCAGTGAAAATCCAAGGACGGGCTCCGAAACACTTTTTCTCCGTCTGTGTAACTCTGGAAAATCACGAGGAGAACATGCTGAAAATCGCTAATTCATTGAATACTACAAACTACAAGGCTCTACTTTCTTCCATGTTTACTTGAAAAATACGAGTCATTATCAAAGGGTATTACTAGATGATTATATCAGATCAGGGGATATTCGAGTTGTGAAAGTAGCTGAAGACGTTTCGGATCAGGTTCAAGCGAATGTGAGTTTTTCTGAGAGAAGAGAAATTTGAAGCAGCCGGTTTCCCTTTTCAGGATTGTCTTCATCGAAGCAGGTATCTCTCCAAATGGACGGCGTTTTTGAATTTGGAAGATCGTTTAGAAGCGAAACAAGATAAGGAGACAATCGCTGCGTATTTGGAGTAACAATTGAAATTAAAAATCCGATGAATCATGTATTAATATTTCAGCAGCATTGTGGATCACAAAACGAACATTTTGAAATGGAGTTCACCAGAAAATGCAGATGTCACCAGATTGCTTGTCAGACCCGAACGAGTTAGTGTCGAAATTTTTTAG</canonical>
            <polymorphic>CGACCGACCGCAGACCCAGCCGACGGACCGCCGACCGAACTTGAGCATTTGCGCGTCAACATGCCAGAGAGTGTTTACGTACGAATCATGTTCTGATTTACAAAATCAAAAAAATGTGTAGCGCATCGTAAAATAAAATGCTGCGTACGTAGACACTCTCTGGTTGGTTGACAGTCAAATGTACGTAGTCGGTCAGCATGGCCAGTTACCGGTCGGCTGGGTCGGCGGTCTTAATTGGTTCCTTTTATGAGCTTCTAATAACCTAGAATGTTCCAGCGAGACTGTCTTTTGTCGTTACTTTGATTGCAAGAAAAAGGAAATGGTCCGCCAGATGAAATCCTTCGTCTTTCCTGAATCTACAGTATACTGTCCAAGACGTGCCGGAGCAAACTATATTTCTATCAGTGAATCACTCGAAGAAAAAGTTCAAACCCCAGTGAAAATCCAAGGACGGGCTCCGAAACACTTTTTCTCCGTCTGTGTAACTCTGGAAAATCACRAGGAGAACATGCTGAAAATCGCTAATTCATTGAATACTACAAACTACAAGGCTCTACTTTCTTCCATGTTTACTTGAAAAATACGAGTCATTATCAAAGGGTATTACTAGATGATTATATCAGATCAGGGGATATTCGAGTTGTGAAAGTAGCTGAAGACGTTTCGGATCAGGTTCAAGCGAATGTGAGTTTTTCTGAGAGAAGAGAAATTTGAAGCAGCCGGTTTCCCTTTTCAGGATTGTCTTCATCGAAGCAGGTATCTCTCCAAATGGACGGCGTTTTTGAATTTGGAAGATCGTTTAGAAGCGAAACAAGATAAGGAGACAATCGCTGCGTATTTGGAGTAACAATTGAAATTAAAAATCCGATGAATCATGTATTAATATTTCAGCAGCATTGTGGATCACAAAACGAACATTTTGAAATGGAGTTCACCAGAAAATGCAGATGTCACCAGATTGCTTGTCAGACCCGAACGAGTTAGTGTCGAAATTTTTTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>350 266 237 138 9</canonical_bands>
                <polymorphic_bands>350 266 246 138</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGAATCACTCGAAGAAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GCTACTTTCACAACTCGAATATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTGAATCACTCGAAGAAAAAGTTCAAACCCCAGTGAAAATCCAAGGACGGGCTCCGAAACACTTTTTCTCCGTCTGTGTAACTCTGGAAAATCACGAGGAGAACATGCTGAAAATCGCTAATTCATTGAATACTACAAACTACAAGGCTCTACTTTCTTCCATGTTTACTTGAAAAATACGAGTCATTATCAAAGGGTATTACTAGATGATTATATCAGATCAGGGGATATTCGAGTTGTGAAAGTAGC</canonical_amplicon>
		<polymorphic_amplicon>GTGAATCACTCGAAGAAAAAGTTCAAACCCCAGTGAAAATCCAAGGACGGGCTCCGAAACACTTTTTCTCCGTCTGTGTAACTCTGGAAAATCACRAGGAGAACATGCTGAAAATCGCTAATTCATTGAATACTACAAACTACAAGGCTCTACTTTCTTCCATGTTTACTTGAAAAATACGAGTCATTATCAAAGGGTATTACTAGATGATTATATCAGATCAGGGGATATTCGAGTTGTGAAAGTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31317</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>614503</contig_pos>
        <strand></strand>
        <context>AGGTTCAAGC[G/A]AATGTGAGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GATATTCGAGTTGTGAAAGTAGCTGAAGACGTTTCGGATCAGGTTCAAGC</left_flank>
        <right_flank>AATGTGAGTTTTTCTGAGAGAAGAGAAATTTGAAGCAGCCGGTTTCCCTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACGTAGTCGGTCAGCATGGCCAGTTACCGGTCGGCTGGGTCGGCGGTCTTAATTGGTTCCTTTTATGAGCTTCTAATAACCTAGAATGTTCCAGCGAGACTGTCTTTTGTCGTTACTTTGATTGCAAGAAAAAGGAAATGGTCCGCCAGATGAAATCCTTCGTCTTTCCTGAATCTACAGTATACTGTCCAAGACGTGCCGGAGCAAACTATATTTCTATCAGTGAATCACTCGAAGAAAAAGTTCAAACCCCAGTGAAAATCCAAGGACGGGCTCCGAAACACTTTTTCTCCGTCTGTGTAACTCTGGAAAATCACGAGGAGAACATGCTGAAAATCGCTAATTCATTGAATACTACAAACTACAAGGCTCTACTTTCTTCCATGTTTACTTGAAAAATACGAGTCATTATCAAAGGGTATTACTAGATGATTATATCAGATCAGGGGATATTCGAGTTGTGAAAGTAGCTGAAGACGTTTCGGATCAGGTTCAAGCGAATGTGAGTTTTTCTGAGAGAAGAGAAATTTGAAGCAGCCGGTTTCCCTTTTCAGGATTGTCTTCATCGAAGCAGGTATCTCTCCAAATGGACGGCGTTTTTGAATTTGGAAGATCGTTTAGAAGCGAAACAAGATAAGGAGACAATCGCTGCGTATTTGGAGTAACAATTGAAATTAAAAATCCGATGAATCATGTATTAATATTTCAGCAGCATTGTGGATCACAAAACGAACATTTTGAAATGGAGTTCACCAGAAAATGCAGATGTCACCAGATTGCTTGTCAGACCCGAACGAGTTAGTGTCGAAATTTTTTAGTTTTGATGGGAAATACTTTTGTTCAGATTGTCTCCATCAACGACCACCCAATAACCGTATATCTTGGGGATGAACTGGATGAAAGTTTAGAACCTTCTGGTATCTTGAGGTAGTTTTTTTTGCATTACTCATCAGAAATCAATTATTTCTTTTAGAAAATTTTCCACATCCTCCAATCTGT</canonical>
            <polymorphic>TACGTAGTCGGTCAGCATGGCCAGTTACCGGTCGGCTGGGTCGGCGGTCTTAATTGGTTCCTTTTATGAGCTTCTAATAACCTAGAATGTTCCAGCGAGACTGTCTTTTGTCGTTACTTTGATTGCAAGAAAAAGGAAATGGTCCGCCAGATGAAATCCTTCGTCTTTCCTGAATCTACAGTATACTGTCCAAGACGTGCCGGAGCAAACTATATTTCTATCAGTGAATCACTCGAAGAAAAAGTTCAAACCCCAGTGAAAATCCAAGGACGGGCTCCGAAACACTTTTTCTCCGTCTGTGTAACTCTGGAAAATCACGAGGAGAACATGCTGAAAATCGCTAATTCATTGAATACTACAAACTACAAGGCTCTACTTTCTTCCATGTTTACTTGAAAAATACGAGTCATTATCAAAGGGTATTACTAGATGATTATATCAGATCAGGGGATATTCGAGTTGTGAAAGTAGCTGAAGACGTTTCGGATCAGGTTCAAGCRAATGTGAGTTTTTCTGAGAGAAGAGAAATTTGAAGCAGCCGGTTTCCCTTTTCAGGATTGTCTTCATCGAAGCAGGTATCTCTCCAAATGGACGGCGTTTTTGAATTTGGAAGATCGTTTAGAAGCGAAACAAGATAAGGAGACAATCGCTGCGTATTTGGAGTAACAATTGAAATTAAAAATCCGATGAATCATGTATTAATATTTCAGCAGCATTGTGGATCACAAAACGAACATTTTGAAATGGAGTTCACCAGAAAATGCAGATGTCACCAGATTGCTTGTCAGACCCGAACGAGTTAGTGTCGAAATTTTTTAGTTTTGATGGGAAATACTTTTGTTCAGATTGTCTCCATCAACGACCACCCAATAACCGTATATCTTGGGGATGAACTGGATGAAAGTTTAGAACCTTCTGGTATCTTGAGGTAGTTTTTTTTGCATTACTCATCAGAAATCAATTATTTCTTTTAGAAAATTTTCCACATCCTCCAATCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGTCATTATCAAAGGGTATTA</pcr_primer_p1>
		<pcr_primer_p2>CGATTGTCTCCTTATCTTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CGAGTCATTATCAAAGGGTATTACTAGATGATTATATCAGATCAGGGGATATTCGAGTTGTGAAAGTAGCTGAAGACGTTTCGGATCAGGTTCAAGCGAATGTGAGTTTTTCTGAGAGAAGAGAAATTTGAAGCAGCCGGTTTCCCTTTTCAGGATTGTCTTCATCGAAGCAGGTATCTCTCCAAATGGACGGCGTTTTTGAATTTGGAAGATCGTTTAGAAGCGAAACAAGATAAGGAGACAATCG</canonical_amplicon>
		<polymorphic_amplicon>CGAGTCATTATCAAAGGGTATTACTAGATGATTATATCAGATCAGGGGATATTCGAGTTGTGAAAGTAGCTGAAGACGTTTCGGATCAGGTTCAAGCRAATGTGAGTTTTTCTGAGAGAAGAGAAATTTGAAGCAGCCGGTTTCCCTTTTCAGGATTGTCTTCATCGAAGCAGGTATCTCTCCAAATGGACGGCGTTTTTGAATTTGGAAGATCGTTTAGAAGCGAAACAAGATAAGGAGACAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31318</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>614528</contig_pos>
        <strand></strand>
        <context>TGAGAGAAGA[G/A]AAATTTGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAGACGTTTCGGATCAGGTTCAAGCGAATGTGAGTTTTTCTGAGAGAAGA</left_flank>
        <right_flank>AAATTTGAAGCAGCCGGTTTCCCTTTTCAGGATTGTCTTCATCGAAGCAG</right_flank>
        <qual_score>33</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACCGGTCGGCTGGGTCGGCGGTCTTAATTGGTTCCTTTTATGAGCTTCTAATAACCTAGAATGTTCCAGCGAGACTGTCTTTTGTCGTTACTTTGATTGCAAGAAAAAGGAAATGGTCCGCCAGATGAAATCCTTCGTCTTTCCTGAATCTACAGTATACTGTCCAAGACGTGCCGGAGCAAACTATATTTCTATCAGTGAATCACTCGAAGAAAAAGTTCAAACCCCAGTGAAAATCCAAGGACGGGCTCCGAAACACTTTTTCTCCGTCTGTGTAACTCTGGAAAATCACGAGGAGAACATGCTGAAAATCGCTAATTCATTGAATACTACAAACTACAAGGCTCTACTTTCTTCCATGTTTACTTGAAAAATACGAGTCATTATCAAAGGGTATTACTAGATGATTATATCAGATCAGGGGATATTCGAGTTGTGAAAGTAGCTGAAGACGTTTCGGATCAGGTTCAAGCGAATGTGAGTTTTTCTGAGAGAAGAGAAATTTGAAGCAGCCGGTTTCCCTTTTCAGGATTGTCTTCATCGAAGCAGGTATCTCTCCAAATGGACGGCGTTTTTGAATTTGGAAGATCGTTTAGAAGCGAAACAAGATAAGGAGACAATCGCTGCGTATTTGGAGTAACAATTGAAATTAAAAATCCGATGAATCATGTATTAATATTTCAGCAGCATTGTGGATCACAAAACGAACATTTTGAAATGGAGTTCACCAGAAAATGCAGATGTCACCAGATTGCTTGTCAGACCCGAACGAGTTAGTGTCGAAATTTTTTAGTTTTGATGGGAAATACTTTTGTTCAGATTGTCTCCATCAACGACCACCCAATAACCGTATATCTTGGGGATGAACTGGATGAAAGTTTAGAACCTTCTGGTATCTTGAGGTAGTTTTTTTTGCATTACTCATCAGAAATCAATTATTTCTTTTAGAAAATTTTCCACATCCTCCAATCTGTCTCCTGAAAACTTCACGGATAACCT</canonical>
            <polymorphic>TACCGGTCGGCTGGGTCGGCGGTCTTAATTGGTTCCTTTTATGAGCTTCTAATAACCTAGAATGTTCCAGCGAGACTGTCTTTTGTCGTTACTTTGATTGCAAGAAAAAGGAAATGGTCCGCCAGATGAAATCCTTCGTCTTTCCTGAATCTACAGTATACTGTCCAAGACGTGCCGGAGCAAACTATATTTCTATCAGTGAATCACTCGAAGAAAAAGTTCAAACCCCAGTGAAAATCCAAGGACGGGCTCCGAAACACTTTTTCTCCGTCTGTGTAACTCTGGAAAATCACGAGGAGAACATGCTGAAAATCGCTAATTCATTGAATACTACAAACTACAAGGCTCTACTTTCTTCCATGTTTACTTGAAAAATACGAGTCATTATCAAAGGGTATTACTAGATGATTATATCAGATCAGGGGATATTCGAGTTGTGAAAGTAGCTGAAGACGTTTCGGATCAGGTTCAAGCGAATGTGAGTTTTTCTGAGAGAAGARAAATTTGAAGCAGCCGGTTTCCCTTTTCAGGATTGTCTTCATCGAAGCAGGTATCTCTCCAAATGGACGGCGTTTTTGAATTTGGAAGATCGTTTAGAAGCGAAACAAGATAAGGAGACAATCGCTGCGTATTTGGAGTAACAATTGAAATTAAAAATCCGATGAATCATGTATTAATATTTCAGCAGCATTGTGGATCACAAAACGAACATTTTGAAATGGAGTTCACCAGAAAATGCAGATGTCACCAGATTGCTTGTCAGACCCGAACGAGTTAGTGTCGAAATTTTTTAGTTTTGATGGGAAATACTTTTGTTCAGATTGTCTCCATCAACGACCACCCAATAACCGTATATCTTGGGGATGAACTGGATGAAAGTTTAGAACCTTCTGGTATCTTGAGGTAGTTTTTTTTGCATTACTCATCAGAAATCAATTATTTCTTTTAGAAAATTTTCCACATCCTCCAATCTGTCTCCTGAAAACTTCACGGATAACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATATTCGAGTTGTGAAAGTAGC</pcr_primer_p1>
		<pcr_primer_p2>ATACATGATTCATCGGATTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATATTCGAGTTGTGAAAGTAGCTGAAGACGTTTCGGATCAGGTTCAAGCGAATGTGAGTTTTTCTGAGAGAAGAGAAATTTGAAGCAGCCGGTTTCCCTTTTCAGGATTGTCTTCATCGAAGCAGGTATCTCTCCAAATGGACGGCGTTTTTGAATTTGGAAGATCGTTTAGAAGCGAAACAAGATAAGGAGACAATCGCTGCGTATTTGGAGTAACAATTGAAATTAAAAATCCGATGAATCATGTAT</canonical_amplicon>
		<polymorphic_amplicon>GATATTCGAGTTGTGAAAGTAGCTGAAGACGTTTCGGATCAGGTTCAAGCGAATGTGAGTTTTTCTGAGAGAAGARAAATTTGAAGCAGCCGGTTTCCCTTTTCAGGATTGTCTTCATCGAAGCAGGTATCTCTCCAAATGGACGGCGTTTTTGAATTTGGAAGATCGTTTAGAAGCGAAACAAGATAAGGAGACAATCGCTGCGTATTTGGAGTAACAATTGAAATTAAAAATCCGATGAATCATGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31319</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>631118</contig_pos>
        <strand>+</strand>
        <context>AGSWTTTAAA[C/T]AATCTCAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAA</left_flank>
        <right_flank>AATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGAAGTTTCTAGAGCTATGCGAATTAAAATTAGACCAATGTGATGCGGAAAACAAAATTTTTTTTTTCGGGTTACTGTAGTTGTCGTTGTCGGACCTTTTATCTTTCGATGAGTTTTATCGATTTTTCAATGATTTTCAAGATTTTTTGCGCTTTTTTTTAATGGAAAAAAAATAGCTCAACATTGATGAAATTCGTCGAAAAATCCAGAATAACACCAATATTTCTTCTAGATTCTGAATCGCGTAAAATGGGTGTACGATGTGCCCGATGTGACTTGCGATCAAAAACAGAGCATCTATCAGTACCACGCAGGACTCAATGCGTCGTGTTGGGTGGAGGAGCAAAAGAGATTGGAGAGTTTGAACGCCACTCTTCTGGATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTGGCTGGTGTGGAGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAACCGAAAAAAAAACACATGCTGACTTTTGATTGACTTTTGACATGAAATACAAATATTTTTGTACACAATACAGGGAAAATGACAAAAAATTATCCCTAGATTTGCTCCTTCTGCTTCCGACTCTCCTCGTAACATGCCACTTTCATACACATCATTTCCTTGTGCTCGGCGATGCACTGAAAAAATATTTTTAGAATTTTAGAAAGATCTTAATGTGAAGAATAAAGTGCCTAACTTTCTCAACATGATTTTCCTAGGCCACCATAGTTAATGATCCAGACATGGTCTAACCTAAACTTGATGTGTTTTCTAGGTAACTTAATATGATGACCTAACTTTTTCAAGTTGAGGTTTTGTAGGCCACCAGTTTTTATGGCTTAGAAAAAACAGTAGGTGAATATCAGGAAACCCACCAGGCCATTT</canonical>
            <polymorphic>TCGAAGTTTCTAGAGCTATGCGAATTAAAATTAGACCAATGTGATGCGGAAAACAAAATTTTTTTTTTCGGGTTACTGTAGTTGTCGTTGTCGGACCTTTTATCTTTCGATGAGTTTTATCGATTTTTCAATGATTTTCAAGATTTTTTGCGCTTTTTTTTAATGGAAAAAAAATAGCTCAACATTGATGAAATTCGTCGAAAAATCCAGAATAACACCAATATTTCTTCTAGATTCTGAATCGCGTAAAATGGGTGTACGATGTGCCCGATGTGACTTGCGATCAAAAACAGAGCATCTATCAGTACCACGCAGGACTCAATGCGTCGTGTTGGGTGGAGGAGCAAAAGAGATTGGAGAGTTTGAACGCCACTCTTCTGGATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTGGCTGGTGTGGAGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAYAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAACCGAAAAAAAAACACATGCTGACTTTTGATTGACTTTTGACATGAAATACAAATATTTTTGTACACAATACAGGGAAAATGACAAAAAATTATCCCTAGATTTGCTCCTTCTGCTTCCGACTCTCCTCGTAACATGCCACTTTCATACACATCATTTCCTTGTGCTCGGCGATGCACTGAAAAAATATTTTTAGAATTTTAGAAAGATCTTAATGTGAAGAATAAAGTGCCTAACTTTCTCAACATGATTTTCCTAGGCCACCATAGTTAATGATCCAGACATGGTCTAACCTAAACTTGATGTGTTTTCTAGGTAACTTAATATGATGACCTAACTTTTTCAAGTTGAGGTTTTGTAGGCCACCAGTTTTTATGGCTTAGAAAAAACAGTAGGTGAATATCAGGAAACCCACCAGGCCATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCAAAAGAGATTGGAGAGT</pcr_primer_p1>
		<pcr_primer_p2>GTTTTCCTCTCTTTTTCAATGTC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GAGCAAAAGAGATTGGAGAGTTTGAACGCCACTCTTCTGGATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTGGCTGGTGTGGAGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAAAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAAC</canonical_amplicon>
		<polymorphic_amplicon>GAGCAAAAGAGATTGGAGAGTTTGAACGCCACTCTTCTGGATCCAGATCTTGGAAGCACTTCGGATTCGTTGTTCACCGCAGAGGAGTTGGCTGGTGTGGAGGCAACTACAGAGAGCGATAATGAGAGGAACAAGAATTGAATAATAAAGGTTTTAAAYAATCTCAAAAAATTCCGTAGTTTATGACATAAAAAAGAATAAAATTCACACGAAAGACATTGAAAAAGAGAGGAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31328</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>643158</contig_pos>
        <strand>+</strand>
        <context>ATAGAATTAG[A/G]AAAAAATACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCAGAAACTCTTTATTAAAACTTAAAAACTCTTTCTCTAATAGAATTAG</left_flank>
        <right_flank>AAAAAATACGGTAACAAATTTCCGAGTTTCTTGAAAACGAAACGTCTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGCAACAGTAAAACTTTTATTTGCACTTTCAAACTTTTTCGAGCAATGGATAAACTTTTCTAAGCAACAACGAAACTATTCTAAGCCGTTTATAAACTTTTTCAGCCGTGGCTAATCGGGCACCTTTTTTAATTTAATCGTGGCTTGTTTATGGCTCAGAAAGGTTTTCCGAACTACCTGAGCAGTTAGTACATTTGAACTCCCAAGAATTTTGAGGATGCAGATTCAAAATTTTCATAAAATTTTGCTATAGAAACTTTCTAAAAATCAGCAAATTTGTAGGACCAAAATAACGAATTTTGCTAAAATGTCGATTTTTTTGATTGCTGAAAAATTTCGAAATTTTTTTCAATATCAGGCTCCTAGGACCATTTTGATTTTCTCCATTGCCATGGCGTTTTCGAGTTCCTCAGAGATTGTGTCTTAAATATATTTTTTCAGCTTAAAACCAGAAACTCTTTATTAAAACTTAAAAACTCTTTCTCTAATAGAATTAGAAAAAAATACGGTAACAAATTTCCGAGTTTCTTGAAAACGAAACGTCTGAATCGACAACTTTCTGAATTTCTAATATGTATCTAAAAAGTTCATACCGCTGGCCTCTTTTTTTCAGTGATTTTTGTTTTTTTTCCTTTATAAATATTTCGGTTTTCTCATCATGTTTGTTTTCAAATCATTCTCTAAAGCCTAAATTATTCGTATCTTCTTGAACCCTTCACTATTTGTTCAGGAGCGCTCTCACGTGAAGTTTGGGTGAAGCTGAGATGATGACCTGAAGGAAAATGAAAAAAAAACCGATTGTATTATTTTCGGTTTGACCCCTCTTTGAGAGTGGACAAGAGTGGGCTAATAAGCAGTTGGTGTTCATTTTTTGGAGCTGCTATTGAAGGAGAAGAAATAAAGATGCGACACAAAATATTTTTCTTTGTTGTCCGTTTTTCAGTAGTTTTTTCGATTTTTTATTTAGAAGCAATAGTAGGATTTTCCCAGGTGACAAG</canonical>
            <polymorphic>TAAGCAACAGTAAAACTTTTATTTGCACTTTCAAACTTTTTCGAGCAATGGATAAACTTTTCTAAGCAACAACGAAACTATTCTAAGCCGTTTATAAACTTTTTCAGCCGTGGCTAATCGGGCACCTTTTTTAATTTAATCGTGGCTTGTTTATGGCTCAGAAAGGTTTTCCGAACTACCTGAGCAGTTAGTACATTTGAACTCCCAAGAATTTTGAGGATGCAGATTCAAAATTTTCATAAAATTTTGCTATAGAAACTTTCTAAAAATCAGCAAATTTGTAGGACCAAAATAACGAATTTTGCTAAAATGTCGATTTTTTTGATTGCTGAAAAATTTCGAAATTTTTTTCAATATCAGGCTCCTAGGACCATTTTGATTTTCTCCATTGCCATGGCGTTTTCGAGTTCCTCAGAGATTGTGTCTTAAATATATTTTTTCAGCTTAAAACCAGAAACTCTTTATTAAAACTTAAAAACTCTTTCTCTAATAGAATTAGRAAAAAATACGGTAACAAATTTCCGAGTTTCTTGAAAACGAAACGTCTGAATCGACAACTTTCTGAATTTCTAATATGTATCTAAAAAGTTCATACCGCTGGCCTCTTTTTTTCAGTGATTTTTGTTTTTTTTCCTTTATAAATATTTCGGTTTTCTCATCATGTTTGTTTTCAAATCATTCTCTAAAGCCTAAATTATTCGTATCTTCTTGAACCCTTCACTATTTGTTCAGGAGCGCTCTCACGTGAAGTTTGGGTGAAGCTGAGATGATGACCTGAAGGAAAATGAAAAAAAAACCGATTGTATTATTTTCGGTTTGACCCCTCTTTGAGAGTGGACAAGAGTGGGCTAATAAGCAGTTGGTGTTCATTTTTTGGAGCTGCTATTGAAGGAGAAGAAATAAAGATGCGACACAAAATATTTTTCTTTGTTGTCCGTTTTTCAGTAGTTTTTTCGATTTTTTATTTAGAAGCAATAGTAGGATTTTCCCAGGTGACAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTAAAACCAGAAACTCTTTATT</pcr_primer_p1>
		<pcr_primer_p2>TAGGCTTTAGAGAATGATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTTAAAACCAGAAACTCTTTATTAAAACTTAAAAACTCTTTCTCTAATAGAATTAGAAAAAAATACGGTAACAAATTTCCGAGTTTCTTGAAAACGAAACGTCTGAATCGACAACTTTCTGAATTTCTAATATGTATCTAAAAAGTTCATACCGCTGGCCTCTTTTTTTCAGTGATTTTTGTTTTTTTTCCTTTATAAATATTTCGGTTTTCTCATCATGTTTGTTTTCAAATCATTCTCTAAAGCCTA</canonical_amplicon>
		<polymorphic_amplicon>GCTTAAAACCAGAAACTCTTTATTAAAACTTAAAAACTCTTTCTCTAATAGAATTAGRAAAAAATACGGTAACAAATTTCCGAGTTTCTTGAAAACGAAACGTCTGAATCGACAACTTTCTGAATTTCTAATATGTATCTAAAAAGTTCATACCGCTGGCCTCTTTTTTTCAGTGATTTTTGTTTTTTTTCCTTTATAAATATTTCGGTTTTCTCATCATGTTTGTTTTCAAATCATTCTCTAAAGCCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31329</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>643283</contig_pos>
        <strand></strand>
        <context>GTGATTTTTG[T/G]TTTTTTTCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATGTATCTAAAAAGTTCATACCGCTGGCCTCTTTTTTTCAGTGATTTTTG</left_flank>
        <right_flank>TTTTTTTCCTTTATAAATATTTCGGTTTTCTCATCATGTTTGTTTTCAAA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTTTAATTTAATCGTGGCTTGTTTATGGCTCAGAAAGGTTTTCCGAACTACCTGAGCAGTTAGTACATTTGAACTCCCAAGAATTTTGAGGATGCAGATTCAAAATTTTCATAAAATTTTGCTATAGAAACTTTCTAAAAATCAGCAAATTTGTAGGACCAAAATAACGAATTTTGCTAAAATGTCGATTTTTTTGATTGCTGAAAAATTTCGAAATTTTTTTCAATATCAGGCTCCTAGGACCATTTTGATTTTCTCCATTGCCATGGCGTTTTCGAGTTCCTCAGAGATTGTGTCTTAAATATATTTTTTCAGCTTAAAACCAGAAACTCTTTATTAAAACTTAAAAACTCTTTCTCTAATAGAATTAGAAAAAAATACGGTAACAAATTTCCGAGTTTCTTGAAAACGAAACGTCTGAATCGACAACTTTCTGAATTTCTAATATGTATCTAAAAAGTTCATACCGCTGGCCTCTTTTTTTCAGTGATTTTTGTTTTTTTTCCTTTATAAATATTTCGGTTTTCTCATCATGTTTGTTTTCAAATCATTCTCTAAAGCCTAAATTATTCGTATCTTCTTGAACCCTTCACTATTTGTTCAGGAGCGCTCTCACGTGAAGTTTGGGTGAAGCTGAGATGATGACCTGAAGGAAAATGAAAAAAAAACCGATTGTATTATTTTCGGTTTGACCCCTCTTTGAGAGTGGACAAGAGTGGGCTAATAAGCAGTTGGTGTTCATTTTTTGGAGCTGCTATTGAAGGAGAAGAAATAAAGATGCGACACAAAATATTTTTCTTTGTTGTCCGTTTTTCAGTAGTTTTTTCGATTTTTTATTTAGAAGCAATAGTAGGATTTTCCCAGGTGACAAGACAGATATTTTATCATTAGAGCTAGAGATGTGAAGTTTGTATTATGTTAGTATTTCACTAATTTTGTATTATTGTCGGAATTATAAAACTGTCACCTCAGTGTATGCAACTTCAGTGAAAAAATC</canonical>
            <polymorphic>CTTTTTTAATTTAATCGTGGCTTGTTTATGGCTCAGAAAGGTTTTCCGAACTACCTGAGCAGTTAGTACATTTGAACTCCCAAGAATTTTGAGGATGCAGATTCAAAATTTTCATAAAATTTTGCTATAGAAACTTTCTAAAAATCAGCAAATTTGTAGGACCAAAATAACGAATTTTGCTAAAATGTCGATTTTTTTGATTGCTGAAAAATTTCGAAATTTTTTTCAATATCAGGCTCCTAGGACCATTTTGATTTTCTCCATTGCCATGGCGTTTTCGAGTTCCTCAGAGATTGTGTCTTAAATATATTTTTTCAGCTTAAAACCAGAAACTCTTTATTAAAACTTAAAAACTCTTTCTCTAATAGAATTAGAAAAAAATACGGTAACAAATTTCCGAGTTTCTTGAAAACGAAACGTCTGAATCGACAACTTTCTGAATTTCTAATATGTATCTAAAAAGTTCATACCGCTGGCCTCTTTTTTTCAGTGATTTTTGKTTTTTTTCCTTTATAAATATTTCGGTTTTCTCATCATGTTTGTTTTCAAATCATTCTCTAAAGCCTAAATTATTCGTATCTTCTTGAACCCTTCACTATTTGTTCAGGAGCGCTCTCACGTGAAGTTTGGGTGAAGCTGAGATGATGACCTGAAGGAAAATGAAAAAAAAACCGATTGTATTATTTTCGGTTTGACCCCTCTTTGAGAGTGGACAAGAGTGGGCTAATAAGCAGTTGGTGTTCATTTTTTGGAGCTGCTATTGAAGGAGAAGAAATAAAGATGCGACACAAAATATTTTTCTTTGTTGTCCGTTTTTCAGTAGTTTTTTCGATTTTTTATTTAGAAGCAATAGTAGGATTTTCCCAGGTGACAAGACAGATATTTTATCATTAGAGCTAGAGATGTGAAGTTTGTATTATGTTAGTATTTCACTAATTTTGTATTATTGTCGGAATTATAAAACTGTCACCTCAGTGTATGCAACTTCAGTGAAAAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTAAAACCAGAAACTCTTTATT</pcr_primer_p1>
		<pcr_primer_p2>TAGGCTTTAGAGAATGATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTTAAAACCAGAAACTCTTTATTAAAACTTAAAAACTCTTTCTCTAATAGAATTAGAAAAAAATACGGTAACAAATTTCCGAGTTTCTTGAAAACGAAACGTCTGAATCGACAACTTTCTGAATTTCTAATATGTATCTAAAAAGTTCATACCGCTGGCCTCTTTTTTTCAGTGATTTTTGTTTTTTTTCCTTTATAAATATTTCGGTTTTCTCATCATGTTTGTTTTCAAATCATTCTCTAAAGCCTA</canonical_amplicon>
		<polymorphic_amplicon>GCTTAAAACCAGAAACTCTTTATTAAAACTTAAAAACTCTTTCTCTAATAGAATTAGAAAAAAATACGGTAACAAATTTCCGAGTTTCTTGAAAACGAAACGTCTGAATCGACAACTTTCTGAATTTCTAATATGTATCTAAAAAGTTCATACCGCTGGCCTCTTTTTTTCAGTGATTTTTGKTTTTTTTCCTTTATAAATATTTCGGTTTTCTCATCATGTTTGTTTTCAAATCATTCTCTAAAGCCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31330</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>643936</contig_pos>
        <strand></strand>
        <context>AAGCATGgct[T/A]ccsagcagtg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCT</left_flank>
        <right_flank>CCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAAAATGAAAAAAAAACCGATTGTATTATTTTCGGTTTGACCCCTCTTTGAGAGTGGACAAGAGTGGGCTAATAAGCAGTTGGTGTTCATTTTTTGGAGCTGCTATTGAAGGAGAAGAAATAAAGATGCGACACAAAATATTTTTCTTTGTTGTCCGTTTTTCAGTAGTTTTTTCGATTTTTTATTTAGAAGCAATAGTAGGATTTTCCCAGGTGACAAGACAGATATTTTATCATTAGAGCTAGAGATGTGAAGTTTGTATTATGTTAGTATTTCACTAATTTTGTATTATTGTCGGAATTATAAAACTGTCACCTCAGTGTATGCAACTTCAGTGAAAAAATCTGATTTTTGTACGGATTCTGCATACACCGAGGTGACAGTTTTATAATTCCGGCAATGTGTTAGTATGTTAGTATTATGTTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGCGA</canonical>
            <polymorphic>AGGAAAATGAAAAAAAAACCGATTGTATTATTTTCGGTTTGACCCCTCTTTGAGAGTGGACAAGAGTGGGCTAATAAGCAGTTGGTGTTCATTTTTTGGAGCTGCTATTGAAGGAGAAGAAATAAAGATGCGACACAAAATATTTTTCTTTGTTGTCCGTTTTTCAGTAGTTTTTTCGATTTTTTATTTAGAAGCAATAGTAGGATTTTCCCAGGTGACAAGACAGATATTTTATCATTAGAGCTAGAGATGTGAAGTTTGTATTATGTTAGTATTTCACTAATTTTGTATTATTGTCGGAATTATAAAACTGTCACCTCAGTGTATGCAACTTCAGTGAAAAAATCTGATTTTTGTACGGATTCTGCATACACCGAGGTGACAGTTTTATAATTCCGGCAATGTGTTAGTATGTTAGTATTATGTTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTWCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>299 154 144 94 82 75 62 49 22 11 8</canonical_bands>
                <polymorphic_bands>299 176 144 94 82 75 62 49 11 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGTTTTCTTTTTCGGTAATACT</pcr_primer_p1>
		<pcr_primer_p2>TCAGAACAAAATCGGAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>328</pcr_amplicon_size>
		<canonical_amplicon>TGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGA</canonical_amplicon>
		<polymorphic_amplicon>TGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTWCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31331</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>643939</contig_pos>
        <strand></strand>
        <context>CATGgctwcc[G/C]agcagtgcct</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCC</left_flank>
        <right_flank>AGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATGAAAAAAAAACCGATTGTATTATTTTCGGTTTGACCCCTCTTTGAGAGTGGACAAGAGTGGGCTAATAAGCAGTTGGTGTTCATTTTTTGGAGCTGCTATTGAAGGAGAAGAAATAAAGATGCGACACAAAATATTTTTCTTTGTTGTCCGTTTTTCAGTAGTTTTTTCGATTTTTTATTTAGAAGCAATAGTAGGATTTTCCCAGGTGACAAGACAGATATTTTATCATTAGAGCTAGAGATGTGAAGTTTGTATTATGTTAGTATTTCACTAATTTTGTATTATTGTCGGAATTATAAAACTGTCACCTCAGTGTATGCAACTTCAGTGAAAAAATCTGATTTTTGTACGGATTCTGCATACACCGAGGTGACAGTTTTATAATTCCGGCAATGTGTTAGTATGTTAGTATTATGTTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGCGATTT</canonical>
            <polymorphic>AAAATGAAAAAAAAACCGATTGTATTATTTTCGGTTTGACCCCTCTTTGAGAGTGGACAAGAGTGGGCTAATAAGCAGTTGGTGTTCATTTTTTGGAGCTGCTATTGAAGGAGAAGAAATAAAGATGCGACACAAAATATTTTTCTTTGTTGTCCGTTTTTCAGTAGTTTTTTCGATTTTTTATTTAGAAGCAATAGTAGGATTTTCCCAGGTGACAAGACAGATATTTTATCATTAGAGCTAGAGATGTGAAGTTTGTATTATGTTAGTATTTCACTAATTTTGTATTATTGTCGGAATTATAAAACTGTCACCTCAGTGTATGCAACTTCAGTGAAAAAATCTGATTTTTGTACGGATTCTGCATACACCGAGGTGACAGTTTTATAATTCCGGCAATGTGTTAGTATGTTAGTATTATGTTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCSAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGCGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>296 154 144 94 82 75 65 49 22 11 8</canonical_bands>
                <polymorphic_bands>296 176 144 94 82 75 65 49 11 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGTTTTCTTTTTCGGTAATACT</pcr_primer_p1>
		<pcr_primer_p2>TCAGAACAAAATCGGAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>328</pcr_amplicon_size>
		<canonical_amplicon>TGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGA</canonical_amplicon>
		<polymorphic_amplicon>TGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCSAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31332</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>643983</contig_pos>
        <strand>+</strand>
        <context>gaagaaaGAT[C/T]CCAaaggtcc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGAT</left_flank>
        <right_flank>CCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTT</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTGAGAGTGGACAAGAGTGGGCTAATAAGCAGTTGGTGTTCATTTTTTGGAGCTGCTATTGAAGGAGAAGAAATAAAGATGCGACACAAAATATTTTTCTTTGTTGTCCGTTTTTCAGTAGTTTTTTCGATTTTTTATTTAGAAGCAATAGTAGGATTTTCCCAGGTGACAAGACAGATATTTTATCATTAGAGCTAGAGATGTGAAGTTTGTATTATGTTAGTATTTCACTAATTTTGTATTATTGTCGGAATTATAAAACTGTCACCTCAGTGTATGCAACTTCAGTGAAAAAATCTGATTTTTGTACGGATTCTGCATACACCGAGGTGACAGTTTTATAATTCCGGCAATGTGTTAGTATGTTAGTATTATGTTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGCGATTTGAAAAATCTATTTTCAGAATTTTGTGAATTTCGCTTCGTAAAGT</canonical>
            <polymorphic>CTTTGAGAGTGGACAAGAGTGGGCTAATAAGCAGTTGGTGTTCATTTTTTGGAGCTGCTATTGAAGGAGAAGAAATAAAGATGCGACACAAAATATTTTTCTTTGTTGTCCGTTTTTCAGTAGTTTTTTCGATTTTTTATTTAGAAGCAATAGTAGGATTTTCCCAGGTGACAAGACAGATATTTTATCATTAGAGCTAGAGATGTGAAGTTTGTATTATGTTAGTATTTCACTAATTTTGTATTATTGTCGGAATTATAAAACTGTCACCTCAGTGTATGCAACTTCAGTGAAAAAATCTGATTTTTGTACGGATTCTGCATACACCGAGGTGACAGTTTTATAATTCCGGCAATGTGTTAGTATGTTAGTATTATGTTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATYCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGCGATTTGAAAAATCTATTTTCAGAATTTTGTGAATTTCGCTTCGTAAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>496 304 200</canonical_bands>
                <polymorphic_bands>696 304</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGTTTTCTTTTTCGGTAATACT</pcr_primer_p1>
		<pcr_primer_p2>TCAGAACAAAATCGGAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>328</pcr_amplicon_size>
		<canonical_amplicon>TGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGA</canonical_amplicon>
		<polymorphic_amplicon>TGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATYCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31333</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>644044</contig_pos>
        <strand></strand>
        <context>ccgaattttt[A/T]ctcgattttc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTT</left_flank>
        <right_flank>CTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAAT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAGGAGAAGAAATAAAGATGCGACACAAAATATTTTTCTTTGTTGTCCGTTTTTCAGTAGTTTTTTCGATTTTTTATTTAGAAGCAATAGTAGGATTTTCCCAGGTGACAAGACAGATATTTTATCATTAGAGCTAGAGATGTGAAGTTTGTATTATGTTAGTATTTCACTAATTTTGTATTATTGTCGGAATTATAAAACTGTCACCTCAGTGTATGCAACTTCAGTGAAAAAATCTGATTTTTGTACGGATTCTGCATACACCGAGGTGACAGTTTTATAATTCCGGCAATGTGTTAGTATGTTAGTATTATGTTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGCGATTTGAAAAATCTATTTTCAGAATTTTGTGAATTTCGCTTCGTAAAGTCAAAACGATTCAAAATCTCGAGGAAACGTTTTTTTTCATGTCCCGCCACCTTTAAAATTGC</canonical>
            <polymorphic>TGAAGGAGAAGAAATAAAGATGCGACACAAAATATTTTTCTTTGTTGTCCGTTTTTCAGTAGTTTTTTCGATTTTTTATTTAGAAGCAATAGTAGGATTTTCCCAGGTGACAAGACAGATATTTTATCATTAGAGCTAGAGATGTGAAGTTTGTATTATGTTAGTATTTCACTAATTTTGTATTATTGTCGGAATTATAAAACTGTCACCTCAGTGTATGCAACTTCAGTGAAAAAATCTGATTTTTGTACGGATTCTGCATACACCGAGGTGACAGTTTTATAATTCCGGCAATGTGTTAGTATGTTAGTATTATGTTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTWCTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGCGATTTGAAAAATCTATTTTCAGAATTTTGTGAATTTCGCTTCGTAAAGTCAAAACGATTCAAAATCTCGAGGAAACGTTTTTTTTCATGTCCCGCCACCTTTAAAATTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTTTTCTTTTTCGGTAATACT</pcr_primer_p1>
		<pcr_primer_p2>TCAGAACAAAATCGGAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>328</pcr_amplicon_size>
		<canonical_amplicon>TGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGA</canonical_amplicon>
		<polymorphic_amplicon>TGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTWCTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31334</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>644091</contig_pos>
        <strand></strand>
        <context>aataacagaa[G/A]aatcgacgaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAA</left_flank>
        <right_flank>AATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCGTTTTTCAGTAGTTTTTTCGATTTTTTATTTAGAAGCAATAGTAGGATTTTCCCAGGTGACAAGACAGATATTTTATCATTAGAGCTAGAGATGTGAAGTTTGTATTATGTTAGTATTTCACTAATTTTGTATTATTGTCGGAATTATAAAACTGTCACCTCAGTGTATGCAACTTCAGTGAAAAAATCTGATTTTTGTACGGATTCTGCATACACCGAGGTGACAGTTTTATAATTCCGGCAATGTGTTAGTATGTTAGTATTATGTTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGCGATTTGAAAAATCTATTTTCAGAATTTTGTGAATTTCGCTTCGTAAAGTCAAAACGATTCAAAATCTCGAGGAAACGTTTTTTTTCATGTCCCGCCACCTTTAAAATTGCTTCCCCTATTTCTAGTACTTGCTCTGAACTTTCTATTATTTTGGTAC</canonical>
            <polymorphic>TCCGTTTTTCAGTAGTTTTTTCGATTTTTTATTTAGAAGCAATAGTAGGATTTTCCCAGGTGACAAGACAGATATTTTATCATTAGAGCTAGAGATGTGAAGTTTGTATTATGTTAGTATTTCACTAATTTTGTATTATTGTCGGAATTATAAAACTGTCACCTCAGTGTATGCAACTTCAGTGAAAAAATCTGATTTTTGTACGGATTCTGCATACACCGAGGTGACAGTTTTATAATTCCGGCAATGTGTTAGTATGTTAGTATTATGTTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAARAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGCGATTTGAAAAATCTATTTTCAGAATTTTGTGAATTTCGCTTCGTAAAGTCAAAACGATTCAAAATCTCGAGGAAACGTTTTTTTTCATGTCCCGCCACCTTTAAAATTGCTTCCCCTATTTCTAGTACTTGCTCTGAACTTTCTATTATTTTGGTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>399 294 206 101</canonical_bands>
                <polymorphic_bands>693 206 101</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>399 294 206 101</canonical_bands>
                <polymorphic_bands>693 206 101</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGTTTTCTTTTTCGGTAATACT</pcr_primer_p1>
		<pcr_primer_p2>TCAGAACAAAATCGGAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>328</pcr_amplicon_size>
		<canonical_amplicon>TGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGA</canonical_amplicon>
		<polymorphic_amplicon>TGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAARAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31335</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>644103</contig_pos>
        <strand></strand>
        <context>atcgacgaaa[G/A]ggagtaaaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAA</left_flank>
        <right_flank>GGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTTTTTTCGATTTTTTATTTAGAAGCAATAGTAGGATTTTCCCAGGTGACAAGACAGATATTTTATCATTAGAGCTAGAGATGTGAAGTTTGTATTATGTTAGTATTTCACTAATTTTGTATTATTGTCGGAATTATAAAACTGTCACCTCAGTGTATGCAACTTCAGTGAAAAAATCTGATTTTTGTACGGATTCTGCATACACCGAGGTGACAGTTTTATAATTCCGGCAATGTGTTAGTATGTTAGTATTATGTTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGCGATTTGAAAAATCTATTTTCAGAATTTTGTGAATTTCGCTTCGTAAAGTCAAAACGATTCAAAATCTCGAGGAAACGTTTTTTTTCATGTCCCGCCACCTTTAAAATTGCTTCCCCTATTTCTAGTACTTGCTCTGAACTTTCTATTATTTTGGTACGTAAAAATCGGA</canonical>
            <polymorphic>TAGTTTTTTCGATTTTTTATTTAGAAGCAATAGTAGGATTTTCCCAGGTGACAAGACAGATATTTTATCATTAGAGCTAGAGATGTGAAGTTTGTATTATGTTAGTATTTCACTAATTTTGTATTATTGTCGGAATTATAAAACTGTCACCTCAGTGTATGCAACTTCAGTGAAAAAATCTGATTTTTGTACGGATTCTGCATACACCGAGGTGACAGTTTTATAATTCCGGCAATGTGTTAGTATGTTAGTATTATGTTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAARGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGCGATTTGAAAAATCTATTTTCAGAATTTTGTGAATTTCGCTTCGTAAAGTCAAAACGATTCAAAATCTCGAGGAAACGTTTTTTTTCATGTCCCGCCACCTTTAAAATTGCTTCCCCTATTTCTAGTACTTGCTCTGAACTTTCTATTATTTTGGTACGTAAAAATCGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTTTTCTTTTTCGGTAATACT</pcr_primer_p1>
		<pcr_primer_p2>TCAGAACAAAATCGGAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>328</pcr_amplicon_size>
		<canonical_amplicon>TGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGA</canonical_amplicon>
		<polymorphic_amplicon>TGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAARGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31336</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>644165</contig_pos>
        <strand></strand>
        <context>ggtagttatc[G/A]ttgtgggacc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATC</left_flank>
        <right_flank>TTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTATCATTAGAGCTAGAGATGTGAAGTTTGTATTATGTTAGTATTTCACTAATTTTGTATTATTGTCGGAATTATAAAACTGTCACCTCAGTGTATGCAACTTCAGTGAAAAAATCTGATTTTTGTACGGATTCTGCATACACCGAGGTGACAGTTTTATAATTCCGGCAATGTGTTAGTATGTTAGTATTATGTTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGCGATTTGAAAAATCTATTTTCAGAATTTTGTGAATTTCGCTTCGTAAAGTCAAAACGATTCAAAATCTCGAGGAAACGTTTTTTTTCATGTCCCGCCACCTTTAAAATTGCTTCCCCTATTTCTAGTACTTGCTCTGAACTTTCTATTATTTTGGTACGTAAAAATCGGAGCGATGGAAGAGAAACGCGGGTCGCCGTGGCCGAAGATCTCACAATGACAACTACCGTAACT</canonical>
            <polymorphic>TTTTATCATTAGAGCTAGAGATGTGAAGTTTGTATTATGTTAGTATTTCACTAATTTTGTATTATTGTCGGAATTATAAAACTGTCACCTCAGTGTATGCAACTTCAGTGAAAAAATCTGATTTTTGTACGGATTCTGCATACACCGAGGTGACAGTTTTATAATTCCGGCAATGTGTTAGTATGTTAGTATTATGTTAGTATTTGTTGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCRTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAATTCTAAGATTTTTTTCTATCTGAAAATCATGAGTTCTGTAAATGTCCAATATTTTCGTCGATTACCATAATCGTCAAAGTTGAAAAAAACCCACATTTTTGGCTGGAAAAAATCTGAAAAAAATCGATTTTTAGTCTTAAACACATTTGATTTAAGTGTAAAATCGATGAAAAGCGATTTGAAAAATCTATTTTCAGAATTTTGTGAATTTCGCTTCGTAAAGTCAAAACGATTCAAAATCTCGAGGAAACGTTTTTTTTCATGTCCCGCCACCTTTAAAATTGCTTCCCCTATTTCTAGTACTTGCTCTGAACTTTCTATTATTTTGGTACGTAAAAATCGGAGCGATGGAAGAGAAACGCGGGTCGCCGTGGCCGAAGATCTCACAATGACAACTACCGTAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTTTTCTTTTTCGGTAATACT</pcr_primer_p1>
		<pcr_primer_p2>TTTTAGACCGAAAGTCAATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>387</pcr_amplicon_size>
		<canonical_amplicon>TGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCGTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGGTTTTCTTTTTCGGTAATACTACTGTAAACTTAGTGATAGTATTGAAGCGAAAGCATGGCTTCCGAGCAGTGCCTGTATTGCATCGGAAAAAGCGCGGGAAGAAAGATCCCAAAGGTCCCTCAACGACAACTACCGTAACCTAAGAATACTAGTATTTTCCGAATTTTTACTCGATTTTCGTGCGTTTGCAACTTTTCTGGAAGAAAATAACAGAAGAATCGACGAAAGGGAGTAAAAAACCCAGAAAACACTACGGAAAGTAAACATATTCTTGGTTACGGTAGTTATCRTTGTGGGACCTTCCGATCTTCCGATTTTGTTCTGAAAACCCGTATTAATTTTCGAAATTCTAAGTTTCAAATAAAATTGACTTTCGGTCTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31337</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>676061</contig_pos>
        <strand></strand>
        <context>CTGAATATGC[G/A]TTTTTGTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAACATCAATTATTTATTCGAATTACTGAAAAAATGTATTCTGAATATGC</left_flank>
        <right_flank>TTTTTGTTTGAAAAATGTAAGTTGAGGAGTCATATACAGTACCGGTCAGT</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAACTTCAACCTAACCGGATTTATAATTTTACATCGTTGTTTAGGTGCAAATTTCTGTTTCTAGATGATAATTTTTCTGTGTATTAGCAATTTCGTACCTGGACCTTTGTTCAGCTATTACACAGCAAGTTGACATTTAAAACATGGCCAACAATTTTGAATTATTTTGCCCAACATGTGCCATTTGATTGGCCCACCAATTGTTTTAGTACGGCTCAATTCGAACATAATTTTCTAAGAAAATTCCGAAAATCCTAGGTAATTCCATATTCGAAAAATTCCCACTCTTTAGCGAGACAACAAAATGGTTCCAATCTATCATCTTTGAAAATTTATTTACTTTTTGTTTGCTCCACACCTTTGGTCATCTGATAACATGTTGCAACAAAAGAGTTAAATTTTGAAAAAAAAAATGATAAGACGAATTTCAGAAAGTGTACAAATAGTACAACATCAATTATTTATTCGAATTACTGAAAAAATGTATTCTGAATATGCGTTTTTGTTTGAAAAATGTAAGTTGAGGAGTCATATACAGTACCGGTCAGTAGGGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGAACTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAAAAATGACAATAATTGATTTTTGATGCCAAAATGCATCATTTGTAAAAGTGTGGCATCATACTTCTGACATATGAGAATCTGAGTGACAGATGGAGTATTGGAGATGAGAAAAGTGGCAGAGTAAGAAGATATAAAGTGCAAAGAGGTCAAGAAGAGTTTAAAATTTGATTGAAAAGTTTGGAATGCCAGAACTATTTTTATTTCATCTCAT</canonical>
            <polymorphic>TGAACTTCAACCTAACCGGATTTATAATTTTACATCGTTGTTTAGGTGCAAATTTCTGTTTCTAGATGATAATTTTTCTGTGTATTAGCAATTTCGTACCTGGACCTTTGTTCAGCTATTACACAGCAAGTTGACATTTAAAACATGGCCAACAATTTTGAATTATTTTGCCCAACATGTGCCATTTGATTGGCCCACCAATTGTTTTAGTACGGCTCAATTCGAACATAATTTTCTAAGAAAATTCCGAAAATCCTAGGTAATTCCATATTCGAAAAATTCCCACTCTTTAGCGAGACAACAAAATGGTTCCAATCTATCATCTTTGAAAATTTATTTACTTTTTGTTTGCTCCACACCTTTGGTCATCTGATAACATGTTGCAACAAAAGAGTTAAATTTTGAAAAAAAAAATGATAAGACGAATTTCAGAAAGTGTACAAATAGTACAACATCAATTATTTATTCGAATTACTGAAAAAATGTATTCTGAATATGCRTTTTTGTTTGAAAAATGTAAGTTGAGGAGTCATATACAGTACCGGTCAGTAGGGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGAACTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAAAAATGACAATAATTGATTTTTGATGCCAAAATGCATCATTTGTAAAAGTGTGGCATCATACTTCTGACATATGAGAATCTGAGTGACAGATGGAGTATTGGAGATGAGAAAAGTGGCAGAGTAAGAAGATATAAAGTGCAAAGAGGTCAAGAAGAGTTTAAAATTTGATTGAAAAGTTTGGAATGCCAGAACTATTTTTATTTCATCTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGAATTTCAGAAAGTGTACAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTCGAGCACAATCTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>369</pcr_amplicon_size>
		<canonical_amplicon>ACGAATTTCAGAAAGTGTACAAATAGTACAACATCAATTATTTATTCGAATTACTGAAAAAATGTATTCTGAATATGCGTTTTTGTTTGAAAAATGTAAGTTGAGGAGTCATATACAGTACCGGTCAGTAGGGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGAACTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAAA</canonical_amplicon>
		<polymorphic_amplicon>ACGAATTTCAGAAAGTGTACAAATAGTACAACATCAATTATTTATTCGAATTACTGAAAAAATGTATTCTGAATATGCRTTTTTGTTTGAAAAATGTAAGTTGAGGAGTCATATACAGTACCGGTCAGTAGGGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGAACTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31338</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>676113</contig_pos>
        <strand></strand>
        <context>CCGGTCAGTA[G/A]GKTATACAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTGTTTGAAAAATGTAAGTTGAGGAGTCATATACAGTACCGGTCAGTA</left_flank>
        <right_flank>GGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTGTTTCTAGATGATAATTTTTCTGTGTATTAGCAATTTCGTACCTGGACCTTTGTTCAGCTATTACACAGCAAGTTGACATTTAAAACATGGCCAACAATTTTGAATTATTTTGCCCAACATGTGCCATTTGATTGGCCCACCAATTGTTTTAGTACGGCTCAATTCGAACATAATTTTCTAAGAAAATTCCGAAAATCCTAGGTAATTCCATATTCGAAAAATTCCCACTCTTTAGCGAGACAACAAAATGGTTCCAATCTATCATCTTTGAAAATTTATTTACTTTTTGTTTGCTCCACACCTTTGGTCATCTGATAACATGTTGCAACAAAAGAGTTAAATTTTGAAAAAAAAAATGATAAGACGAATTTCAGAAAGTGTACAAATAGTACAACATCAATTATTTATTCGAATTACTGAAAAAATGTATTCTGAATATGCGTTTTTGTTTGAAAAATGTAAGTTGAGGAGTCATATACAGTACCGGTCAGTAGGGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGAACTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAAAAATGACAATAATTGATTTTTGATGCCAAAATGCATCATTTGTAAAAGTGTGGCATCATACTTCTGACATATGAGAATCTGAGTGACAGATGGAGTATTGGAGATGAGAAAAGTGGCAGAGTAAGAAGATATAAAGTGCAAAGAGGTCAAGAAGAGTTTAAAATTTGATTGAAAAGTTTGGAATGCCAGAACTATTTTTATTTCATCTCATCGGATTATTTGATTCACCATGACTAGCTAAAATTTGCAAGGCCATCATCACC</canonical>
            <polymorphic>TTTCTGTTTCTAGATGATAATTTTTCTGTGTATTAGCAATTTCGTACCTGGACCTTTGTTCAGCTATTACACAGCAAGTTGACATTTAAAACATGGCCAACAATTTTGAATTATTTTGCCCAACATGTGCCATTTGATTGGCCCACCAATTGTTTTAGTACGGCTCAATTCGAACATAATTTTCTAAGAAAATTCCGAAAATCCTAGGTAATTCCATATTCGAAAAATTCCCACTCTTTAGCGAGACAACAAAATGGTTCCAATCTATCATCTTTGAAAATTTATTTACTTTTTGTTTGCTCCACACCTTTGGTCATCTGATAACATGTTGCAACAAAAGAGTTAAATTTTGAAAAAAAAAATGATAAGACGAATTTCAGAAAGTGTACAAATAGTACAACATCAATTATTTATTCGAATTACTGAAAAAATGTATTCTGAATATGCGTTTTTGTTTGAAAAATGTAAGTTGAGGAGTCATATACAGTACCGGTCAGTARGGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGAACTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAAAAATGACAATAATTGATTTTTGATGCCAAAATGCATCATTTGTAAAAGTGTGGCATCATACTTCTGACATATGAGAATCTGAGTGACAGATGGAGTATTGGAGATGAGAAAAGTGGCAGAGTAAGAAGATATAAAGTGCAAAGAGGTCAAGAAGAGTTTAAAATTTGATTGAAAAGTTTGGAATGCCAGAACTATTTTTATTTCATCTCATCGGATTATTTGATTCACCATGACTAGCTAAAATTTGCAAGGCCATCATCACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGAATTTCAGAAAGTGTACAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTCGAGCACAATCTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>369</pcr_amplicon_size>
		<canonical_amplicon>ACGAATTTCAGAAAGTGTACAAATAGTACAACATCAATTATTTATTCGAATTACTGAAAAAATGTATTCTGAATATGCGTTTTTGTTTGAAAAATGTAAGTTGAGGAGTCATATACAGTACCGGTCAGTAGGGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGAACTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAAA</canonical_amplicon>
		<polymorphic_amplicon>ACGAATTTCAGAAAGTGTACAAATAGTACAACATCAATTATTTATTCGAATTACTGAAAAAATGTATTCTGAATATGCGTTTTTGTTTGAAAAATGTAAGTTGAGGAGTCATATACAGTACCGGTCAGTARGGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGAACTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31339</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>676115</contig_pos>
        <strand></strand>
        <context>GGTCAGTARG[G/T]TATACAGAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGTTTGAAAAATGTAAGTTGAGGAGTCATATACAGTACCGGTCAGTAGG</left_flank>
        <right_flank>TATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGTTTCTAGATGATAATTTTTCTGTGTATTAGCAATTTCGTACCTGGACCTTTGTTCAGCTATTACACAGCAAGTTGACATTTAAAACATGGCCAACAATTTTGAATTATTTTGCCCAACATGTGCCATTTGATTGGCCCACCAATTGTTTTAGTACGGCTCAATTCGAACATAATTTTCTAAGAAAATTCCGAAAATCCTAGGTAATTCCATATTCGAAAAATTCCCACTCTTTAGCGAGACAACAAAATGGTTCCAATCTATCATCTTTGAAAATTTATTTACTTTTTGTTTGCTCCACACCTTTGGTCATCTGATAACATGTTGCAACAAAAGAGTTAAATTTTGAAAAAAAAAATGATAAGACGAATTTCAGAAAGTGTACAAATAGTACAACATCAATTATTTATTCGAATTACTGAAAAAATGTATTCTGAATATGCGTTTTTGTTTGAAAAATGTAAGTTGAGGAGTCATATACAGTACCGGTCAGTAGGGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGAACTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAAAAATGACAATAATTGATTTTTGATGCCAAAATGCATCATTTGTAAAAGTGTGGCATCATACTTCTGACATATGAGAATCTGAGTGACAGATGGAGTATTGGAGATGAGAAAAGTGGCAGAGTAAGAAGATATAAAGTGCAAAGAGGTCAAGAAGAGTTTAAAATTTGATTGAAAAGTTTGGAATGCCAGAACTATTTTTATTTCATCTCATCGGATTATTTGATTCACCATGACTAGCTAAAATTTGCAAGGCCATCATCACCGA</canonical>
            <polymorphic>TCTGTTTCTAGATGATAATTTTTCTGTGTATTAGCAATTTCGTACCTGGACCTTTGTTCAGCTATTACACAGCAAGTTGACATTTAAAACATGGCCAACAATTTTGAATTATTTTGCCCAACATGTGCCATTTGATTGGCCCACCAATTGTTTTAGTACGGCTCAATTCGAACATAATTTTCTAAGAAAATTCCGAAAATCCTAGGTAATTCCATATTCGAAAAATTCCCACTCTTTAGCGAGACAACAAAATGGTTCCAATCTATCATCTTTGAAAATTTATTTACTTTTTGTTTGCTCCACACCTTTGGTCATCTGATAACATGTTGCAACAAAAGAGTTAAATTTTGAAAAAAAAAATGATAAGACGAATTTCAGAAAGTGTACAAATAGTACAACATCAATTATTTATTCGAATTACTGAAAAAATGTATTCTGAATATGCGTTTTTGTTTGAAAAATGTAAGTTGAGGAGTCATATACAGTACCGGTCAGTAGGKTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGAACTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAAAAATGACAATAATTGATTTTTGATGCCAAAATGCATCATTTGTAAAAGTGTGGCATCATACTTCTGACATATGAGAATCTGAGTGACAGATGGAGTATTGGAGATGAGAAAAGTGGCAGAGTAAGAAGATATAAAGTGCAAAGAGGTCAAGAAGAGTTTAAAATTTGATTGAAAAGTTTGGAATGCCAGAACTATTTTTATTTCATCTCATCGGATTATTTGATTCACCATGACTAGCTAAAATTTGCAAGGCCATCATCACCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTATAC</site>
                <isoschizomers>
                    <enzyme>BssNAI</enzyme>
                    <enzyme>Bst1107I</enzyme>
                    <enzyme>BstZ17I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 306 118 78</canonical_bands>
                <polymorphic_bands>616 306 78</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTTTGAAAAATGTAAGTTG</pcr_primer_p1>
		<pcr_primer_p2>TTCGAGCACAATCTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTTTGAAAAATGTAAGTTGAGGAGTCATATACAGTACCGGTCAGTAGGGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGAACTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTTTGAAAAATGTAAGTTGAGGAGTCATATACAGTACCGGTCAGTAGGKTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGAACTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31340</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>676186</contig_pos>
        <strand></strand>
        <context>taaatctagg[A/T]ctgttttaca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGG</left_flank>
        <right_flank>CTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAAGTTGACATTTAAAACATGGCCAACAATTTTGAATTATTTTGCCCAACATGTGCCATTTGATTGGCCCACCAATTGTTTTAGTACGGCTCAATTCGAACATAATTTTCTAAGAAAATTCCGAAAATCCTAGGTAATTCCATATTCGAAAAATTCCCACTCTTTAGCGAGACAACAAAATGGTTCCAATCTATCATCTTTGAAAATTTATTTACTTTTTGTTTGCTCCACACCTTTGGTCATCTGATAACATGTTGCAACAAAAGAGTTAAATTTTGAAAAAAAAAATGATAAGACGAATTTCAGAAAGTGTACAAATAGTACAACATCAATTATTTATTCGAATTACTGAAAAAATGTATTCTGAATATGCGTTTTTGTTTGAAAAATGTAAGTTGAGGAGTCATATACAGTACCGGTCAGTAGGGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGAACTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAAAAATGACAATAATTGATTTTTGATGCCAAAATGCATCATTTGTAAAAGTGTGGCATCATACTTCTGACATATGAGAATCTGAGTGACAGATGGAGTATTGGAGATGAGAAAAGTGGCAGAGTAAGAAGATATAAAGTGCAAAGAGGTCAAGAAGAGTTTAAAATTTGATTGAAAAGTTTGGAATGCCAGAACTATTTTTATTTCATCTCATCGGATTATTTGATTCACCATGACTAGCTAAAATTTGCAAGGCCATCATCACCGAACCGTAGCCTAATTTTGTTGGCTGTCAAAAATTTCCAAAAACTTCAACACTACTCAACATGGGAAAAATTG</canonical>
            <polymorphic>GCAAGTTGACATTTAAAACATGGCCAACAATTTTGAATTATTTTGCCCAACATGTGCCATTTGATTGGCCCACCAATTGTTTTAGTACGGCTCAATTCGAACATAATTTTCTAAGAAAATTCCGAAAATCCTAGGTAATTCCATATTCGAAAAATTCCCACTCTTTAGCGAGACAACAAAATGGTTCCAATCTATCATCTTTGAAAATTTATTTACTTTTTGTTTGCTCCACACCTTTGGTCATCTGATAACATGTTGCAACAAAAGAGTTAAATTTTGAAAAAAAAAATGATAAGACGAATTTCAGAAAGTGTACAAATAGTACAACATCAATTATTTATTCGAATTACTGAAAAAATGTATTCTGAATATGCGTTTTTGTTTGAAAAATGTAAGTTGAGGAGTCATATACAGTACCGGTCAGTAGGGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGWCTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGAACTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAAAAATGACAATAATTGATTTTTGATGCCAAAATGCATCATTTGTAAAAGTGTGGCATCATACTTCTGACATATGAGAATCTGAGTGACAGATGGAGTATTGGAGATGAGAAAAGTGGCAGAGTAAGAAGATATAAAGTGCAAAGAGGTCAAGAAGAGTTTAAAATTTGATTGAAAAGTTTGGAATGCCAGAACTATTTTTATTTCATCTCATCGGATTATTTGATTCACCATGACTAGCTAAAATTTGCAAGGCCATCATCACCGAACCGTAGCCTAATTTTGTTGGCTGTCAAAAATTTCCAAAAACTTCAACACTACTCAACATGGGAAAAATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>430 413 89 68</canonical_bands>
                <polymorphic_bands>519 413 68</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTGAGGAGTCATATACAGTACC</pcr_primer_p1>
		<pcr_primer_p2>TTCGAGCACAATCTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>AAGTTGAGGAGTCATATACAGTACCGGTCAGTAGGGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGAACTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAA</canonical_amplicon>
		<polymorphic_amplicon>AAGTTGAGGAGTCATATACAGTACCGGTCAGTAGGGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGWCTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGAACTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31341</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>676235</contig_pos>
        <strand></strand>
        <context>gcttgacagc[T/C]garctccaga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGC</left_flank>
        <right_flank>GAACTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATGTGCCATTTGATTGGCCCACCAATTGTTTTAGTACGGCTCAATTCGAACATAATTTTCTAAGAAAATTCCGAAAATCCTAGGTAATTCCATATTCGAAAAATTCCCACTCTTTAGCGAGACAACAAAATGGTTCCAATCTATCATCTTTGAAAATTTATTTACTTTTTGTTTGCTCCACACCTTTGGTCATCTGATAACATGTTGCAACAAAAGAGTTAAATTTTGAAAAAAAAAATGATAAGACGAATTTCAGAAAGTGTACAAATAGTACAACATCAATTATTTATTCGAATTACTGAAAAAATGTATTCTGAATATGCGTTTTTGTTTGAAAAATGTAAGTTGAGGAGTCATATACAGTACCGGTCAGTAGGGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGAACTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAAAAATGACAATAATTGATTTTTGATGCCAAAATGCATCATTTGTAAAAGTGTGGCATCATACTTCTGACATATGAGAATCTGAGTGACAGATGGAGTATTGGAGATGAGAAAAGTGGCAGAGTAAGAAGATATAAAGTGCAAAGAGGTCAAGAAGAGTTTAAAATTTGATTGAAAAGTTTGGAATGCCAGAACTATTTTTATTTCATCTCATCGGATTATTTGATTCACCATGACTAGCTAAAATTTGCAAGGCCATCATCACCGAACCGTAGCCTAATTTTGTTGGCTGTCAAAAATTTCCAAAAACTTCAACACTACTCAACATGGGAAAAATTGCAATATTCCAACCTAGTTTCGTTAGAACAAAAACTACTTTTGCATGGAT</canonical>
            <polymorphic>ACATGTGCCATTTGATTGGCCCACCAATTGTTTTAGTACGGCTCAATTCGAACATAATTTTCTAAGAAAATTCCGAAAATCCTAGGTAATTCCATATTCGAAAAATTCCCACTCTTTAGCGAGACAACAAAATGGTTCCAATCTATCATCTTTGAAAATTTATTTACTTTTTGTTTGCTCCACACCTTTGGTCATCTGATAACATGTTGCAACAAAAGAGTTAAATTTTGAAAAAAAAAATGATAAGACGAATTTCAGAAAGTGTACAAATAGTACAACATCAATTATTTATTCGAATTACTGAAAAAATGTATTCTGAATATGCGTTTTTGTTTGAAAAATGTAAGTTGAGGAGTCATATACAGTACCGGTCAGTAGGGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCYGAACTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAAAAATGACAATAATTGATTTTTGATGCCAAAATGCATCATTTGTAAAAGTGTGGCATCATACTTCTGACATATGAGAATCTGAGTGACAGATGGAGTATTGGAGATGAGAAAAGTGGCAGAGTAAGAAGATATAAAGTGCAAAGAGGTCAAGAAGAGTTTAAAATTTGATTGAAAAGTTTGGAATGCCAGAACTATTTTTATTTCATCTCATCGGATTATTTGATTCACCATGACTAGCTAAAATTTGCAAGGCCATCATCACCGAACCGTAGCCTAATTTTGTTGGCTGTCAAAAATTTCCAAAAACTTCAACACTACTCAACATGGGAAAAATTGCAATATTCCAACCTAGTTTCGTTAGAACAAAAACTACTTTTGCATGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>490 354 148 8</canonical_bands>
                <polymorphic_bands>490 362 148</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>449 354 99 22 20 19 15 14 8</canonical_bands>
                <polymorphic_bands>449 362 99 22 20 19 15 14</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTGAGGAGTCATATACAGTACC</pcr_primer_p1>
		<pcr_primer_p2>TTCGAGCACAATCTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>AAGTTGAGGAGTCATATACAGTACCGGTCAGTAGGGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGAACTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAA</canonical_amplicon>
		<polymorphic_amplicon>AAGTTGAGGAGTCATATACAGTACCGGTCAGTAGGGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCYGAACTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31342</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>676238</contig_pos>
        <strand></strand>
        <context>tgacagcyga[A/G]ctccagamtc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGA</left_flank>
        <right_flank>CTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGCCATTTGATTGGCCCACCAATTGTTTTAGTACGGCTCAATTCGAACATAATTTTCTAAGAAAATTCCGAAAATCCTAGGTAATTCCATATTCGAAAAATTCCCACTCTTTAGCGAGACAACAAAATGGTTCCAATCTATCATCTTTGAAAATTTATTTACTTTTTGTTTGCTCCACACCTTTGGTCATCTGATAACATGTTGCAACAAAAGAGTTAAATTTTGAAAAAAAAAATGATAAGACGAATTTCAGAAAGTGTACAAATAGTACAACATCAATTATTTATTCGAATTACTGAAAAAATGTATTCTGAATATGCGTTTTTGTTTGAAAAATGTAAGTTGAGGAGTCATATACAGTACCGGTCAGTAGGGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGAACTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAAAAATGACAATAATTGATTTTTGATGCCAAAATGCATCATTTGTAAAAGTGTGGCATCATACTTCTGACATATGAGAATCTGAGTGACAGATGGAGTATTGGAGATGAGAAAAGTGGCAGAGTAAGAAGATATAAAGTGCAAAGAGGTCAAGAAGAGTTTAAAATTTGATTGAAAAGTTTGGAATGCCAGAACTATTTTTATTTCATCTCATCGGATTATTTGATTCACCATGACTAGCTAAAATTTGCAAGGCCATCATCACCGAACCGTAGCCTAATTTTGTTGGCTGTCAAAAATTTCCAAAAACTTCAACACTACTCAACATGGGAAAAATTGCAATATTCCAACCTAGTTTCGTTAGAACAAAAACTACTTTTGCATGGATTTC</canonical>
            <polymorphic>TGTGCCATTTGATTGGCCCACCAATTGTTTTAGTACGGCTCAATTCGAACATAATTTTCTAAGAAAATTCCGAAAATCCTAGGTAATTCCATATTCGAAAAATTCCCACTCTTTAGCGAGACAACAAAATGGTTCCAATCTATCATCTTTGAAAATTTATTTACTTTTTGTTTGCTCCACACCTTTGGTCATCTGATAACATGTTGCAACAAAAGAGTTAAATTTTGAAAAAAAAAATGATAAGACGAATTTCAGAAAGTGTACAAATAGTACAACATCAATTATTTATTCGAATTACTGAAAAAATGTATTCTGAATATGCGTTTTTGTTTGAAAAATGTAAGTTGAGGAGTCATATACAGTACCGGTCAGTAGGGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGARCTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAAAAATGACAATAATTGATTTTTGATGCCAAAATGCATCATTTGTAAAAGTGTGGCATCATACTTCTGACATATGAGAATCTGAGTGACAGATGGAGTATTGGAGATGAGAAAAGTGGCAGAGTAAGAAGATATAAAGTGCAAAGAGGTCAAGAAGAGTTTAAAATTTGATTGAAAAGTTTGGAATGCCAGAACTATTTTTATTTCATCTCATCGGATTATTTGATTCACCATGACTAGCTAAAATTTGCAAGGCCATCATCACCGAACCGTAGCCTAATTTTGTTGGCTGTCAAAAATTTCCAAAAACTTCAACACTACTCAACATGGGAAAAATTGCAATATTCCAACCTAGTTTCGTTAGAACAAAAACTACTTTTGCATGGATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTGAGGAGTCATATACAGTACC</pcr_primer_p1>
		<pcr_primer_p2>TTCGAGCACAATCTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>AAGTTGAGGAGTCATATACAGTACCGGTCAGTAGGGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGAACTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAA</canonical_amplicon>
		<polymorphic_amplicon>AAGTTGAGGAGTCATATACAGTACCGGTCAGTAGGGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGARCTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31343</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>676246</contig_pos>
        <strand></strand>
        <context>garctccaga[A/C]tcctgaaaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGAACTCCAGA</left_flank>
        <right_flank>TCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGATTGGCCCACCAATTGTTTTAGTACGGCTCAATTCGAACATAATTTTCTAAGAAAATTCCGAAAATCCTAGGTAATTCCATATTCGAAAAATTCCCACTCTTTAGCGAGACAACAAAATGGTTCCAATCTATCATCTTTGAAAATTTATTTACTTTTTGTTTGCTCCACACCTTTGGTCATCTGATAACATGTTGCAACAAAAGAGTTAAATTTTGAAAAAAAAAATGATAAGACGAATTTCAGAAAGTGTACAAATAGTACAACATCAATTATTTATTCGAATTACTGAAAAAATGTATTCTGAATATGCGTTTTTGTTTGAAAAATGTAAGTTGAGGAGTCATATACAGTACCGGTCAGTAGGGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGAACTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAAAAATGACAATAATTGATTTTTGATGCCAAAATGCATCATTTGTAAAAGTGTGGCATCATACTTCTGACATATGAGAATCTGAGTGACAGATGGAGTATTGGAGATGAGAAAAGTGGCAGAGTAAGAAGATATAAAGTGCAAAGAGGTCAAGAAGAGTTTAAAATTTGATTGAAAAGTTTGGAATGCCAGAACTATTTTTATTTCATCTCATCGGATTATTTGATTCACCATGACTAGCTAAAATTTGCAAGGCCATCATCACCGAACCGTAGCCTAATTTTGTTGGCTGTCAAAAATTTCCAAAAACTTCAACACTACTCAACATGGGAAAAATTGCAATATTCCAACCTAGTTTCGTTAGAACAAAAACTACTTTTGCATGGATTTCTCACATTT</canonical>
            <polymorphic>TTGATTGGCCCACCAATTGTTTTAGTACGGCTCAATTCGAACATAATTTTCTAAGAAAATTCCGAAAATCCTAGGTAATTCCATATTCGAAAAATTCCCACTCTTTAGCGAGACAACAAAATGGTTCCAATCTATCATCTTTGAAAATTTATTTACTTTTTGTTTGCTCCACACCTTTGGTCATCTGATAACATGTTGCAACAAAAGAGTTAAATTTTGAAAAAAAAAATGATAAGACGAATTTCAGAAAGTGTACAAATAGTACAACATCAATTATTTATTCGAATTACTGAAAAAATGTATTCTGAATATGCGTTTTTGTTTGAAAAATGTAAGTTGAGGAGTCATATACAGTACCGGTCAGTAGGGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGAACTCCAGAMTCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAAAAATGACAATAATTGATTTTTGATGCCAAAATGCATCATTTGTAAAAGTGTGGCATCATACTTCTGACATATGAGAATCTGAGTGACAGATGGAGTATTGGAGATGAGAAAAGTGGCAGAGTAAGAAGATATAAAGTGCAAAGAGGTCAAGAAGAGTTTAAAATTTGATTGAAAAGTTTGGAATGCCAGAACTATTTTTATTTCATCTCATCGGATTATTTGATTCACCATGACTAGCTAAAATTTGCAAGGCCATCATCACCGAACCGTAGCCTAATTTTGTTGGCTGTCAAAAATTTCCAAAAACTTCAACACTACTCAACATGGGAAAAATTGCAATATTCCAACCTAGTTTCGTTAGAACAAAAACTACTTTTGCATGGATTTCTCACATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>498 181 174 147</canonical_bands>
                <polymorphic_bands>679 174 147</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTGAGGAGTCATATACAGTACC</pcr_primer_p1>
		<pcr_primer_p2>TTCGAGCACAATCTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>AAGTTGAGGAGTCATATACAGTACCGGTCAGTAGGGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGAACTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAA</canonical_amplicon>
		<polymorphic_amplicon>AAGTTGAGGAGTCATATACAGTACCGGTCAGTAGGGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGAACTCCAGAMTCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31344</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>676454</contig_pos>
        <strand></strand>
        <context>AGTATTGGAG[A/C]TGAGAAAAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATCATACTTCTGACATATGAGAATCTGAGTGACAGATGGAGTATTGGAG</left_flank>
        <right_flank>TGAGAAAAGTGGCAGAGTAAGAAGATATAAAGTGCAAAGAGGTCAAGAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTAAATTTTGAAAAAAAAAATGATAAGACGAATTTCAGAAAGTGTACAAATAGTACAACATCAATTATTTATTCGAATTACTGAAAAAATGTATTCTGAATATGCGTTTTTGTTTGAAAAATGTAAGTTGAGGAGTCATATACAGTACCGGTCAGTAGGGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGAACTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAAAAATGACAATAATTGATTTTTGATGCCAAAATGCATCATTTGTAAAAGTGTGGCATCATACTTCTGACATATGAGAATCTGAGTGACAGATGGAGTATTGGAGATGAGAAAAGTGGCAGAGTAAGAAGATATAAAGTGCAAAGAGGTCAAGAAGAGTTTAAAATTTGATTGAAAAGTTTGGAATGCCAGAACTATTTTTATTTCATCTCATCGGATTATTTGATTCACCATGACTAGCTAAAATTTGCAAGGCCATCATCACCGAACCGTAGCCTAATTTTGTTGGCTGTCAAAAATTTCCAAAAACTTCAACACTACTCAACATGGGAAAAATTGCAATATTCCAACCTAGTTTCGTTAGAACAAAAACTACTTTTGCATGGATTTCTCACATTTTCACGTAATCTGAAAAATACATGCTCAAACCAAATTTAGTCTTTCATCTATGTTTTTTTATAGAATCTGAAATTATGCTTTCCAAATTTTTTTGAGCGAACCAATAATAACAAAAACTCATCAAACATTGTCTATACAAAGTGAGTTCAGACATACTTACGGAAGTTCAAAAAACTTAACAAACAGTGTAAAAAGGGTTTGCCATTCC</canonical>
            <polymorphic>GTTAAATTTTGAAAAAAAAAATGATAAGACGAATTTCAGAAAGTGTACAAATAGTACAACATCAATTATTTATTCGAATTACTGAAAAAATGTATTCTGAATATGCGTTTTTGTTTGAAAAATGTAAGTTGAGGAGTCATATACAGTACCGGTCAGTAGGGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGAACTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAAAAATGACAATAATTGATTTTTGATGCCAAAATGCATCATTTGTAAAAGTGTGGCATCATACTTCTGACATATGAGAATCTGAGTGACAGATGGAGTATTGGAGMTGAGAAAAGTGGCAGAGTAAGAAGATATAAAGTGCAAAGAGGTCAAGAAGAGTTTAAAATTTGATTGAAAAGTTTGGAATGCCAGAACTATTTTTATTTCATCTCATCGGATTATTTGATTCACCATGACTAGCTAAAATTTGCAAGGCCATCATCACCGAACCGTAGCCTAATTTTGTTGGCTGTCAAAAATTTCCAAAAACTTCAACACTACTCAACATGGGAAAAATTGCAATATTCCAACCTAGTTTCGTTAGAACAAAAACTACTTTTGCATGGATTTCTCACATTTTCACGTAATCTGAAAAATACATGCTCAAACCAAATTTAGTCTTTCATCTATGTTTTTTTATAGAATCTGAAATTATGCTTTCCAAATTTTTTTGAGCGAACCAATAATAACAAAAACTCATCAAACATTGTCTATACAAAGTGAGTTCAGACATACTTACGGAAGTTCAAAAAACTTAACAAACAGTGTAAAAAGGGTTTGCCATTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTAAAAGTGTGGCATCATAC</pcr_primer_p1>
		<pcr_primer_p2>AACAAAATTAGGCTACGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTGTAAAAGTGTGGCATCATACTTCTGACATATGAGAATCTGAGTGACAGATGGAGTATTGGAGATGAGAAAAGTGGCAGAGTAAGAAGATATAAAGTGCAAAGAGGTCAAGAAGAGTTTAAAATTTGATTGAAAAGTTTGGAATGCCAGAACTATTTTTATTTCATCTCATCGGATTATTTGATTCACCATGACTAGCTAAAATTTGCAAGGCCATCATCACCGAACCGTAGCCTAATTTTGTT</canonical_amplicon>
		<polymorphic_amplicon>TTGTAAAAGTGTGGCATCATACTTCTGACATATGAGAATCTGAGTGACAGATGGAGTATTGGAGMTGAGAAAAGTGGCAGAGTAAGAAGATATAAAGTGCAAAGAGGTCAAGAAGAGTTTAAAATTTGATTGAAAAGTTTGGAATGCCAGAACTATTTTTATTTCATCTCATCGGATTATTTGATTCACCATGACTAGCTAAAATTTGCAAGGCCATCATCACCGAACCGTAGCCTAATTTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31345</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>676466</contig_pos>
        <strand></strand>
        <context>GAGAAAAGTG[G/A]CAGAGTAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GACATATGAGAATCTGAGTGACAGATGGAGTATTGGAGATGAGAAAAGTG</left_flank>
        <right_flank>CAGAGTAAGAAGATATAAAGTGCAAAGAGGTCAAGAAGAGTTTAAAATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAAAATGATAAGACGAATTTCAGAAAGTGTACAAATAGTACAACATCAATTATTTATTCGAATTACTGAAAAAATGTATTCTGAATATGCGTTTTTGTTTGAAAAATGTAAGTTGAGGAGTCATATACAGTACCGGTCAGTAGGGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGAACTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAAAAATGACAATAATTGATTTTTGATGCCAAAATGCATCATTTGTAAAAGTGTGGCATCATACTTCTGACATATGAGAATCTGAGTGACAGATGGAGTATTGGAGATGAGAAAAGTGGCAGAGTAAGAAGATATAAAGTGCAAAGAGGTCAAGAAGAGTTTAAAATTTGATTGAAAAGTTTGGAATGCCAGAACTATTTTTATTTCATCTCATCGGATTATTTGATTCACCATGACTAGCTAAAATTTGCAAGGCCATCATCACCGAACCGTAGCCTAATTTTGTTGGCTGTCAAAAATTTCCAAAAACTTCAACACTACTCAACATGGGAAAAATTGCAATATTCCAACCTAGTTTCGTTAGAACAAAAACTACTTTTGCATGGATTTCTCACATTTTCACGTAATCTGAAAAATACATGCTCAAACCAAATTTAGTCTTTCATCTATGTTTTTTTATAGAATCTGAAATTATGCTTTCCAAATTTTTTTGAGCGAACCAATAATAACAAAAACTCATCAAACATTGTCTATACAAAGTGAGTTCAGACATACTTACGGAAGTTCAAAAAACTTAACAAACAGTGTAAAAAGGGTTTGCCATTCCACTCGTCTGTCT</canonical>
            <polymorphic>AAAAAAAAATGATAAGACGAATTTCAGAAAGTGTACAAATAGTACAACATCAATTATTTATTCGAATTACTGAAAAAATGTATTCTGAATATGCGTTTTTGTTTGAAAAATGTAAGTTGAGGAGTCATATACAGTACCGGTCAGTAGGGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGAACTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAAAAATGACAATAATTGATTTTTGATGCCAAAATGCATCATTTGTAAAAGTGTGGCATCATACTTCTGACATATGAGAATCTGAGTGACAGATGGAGTATTGGAGATGAGAAAAGTGRCAGAGTAAGAAGATATAAAGTGCAAAGAGGTCAAGAAGAGTTTAAAATTTGATTGAAAAGTTTGGAATGCCAGAACTATTTTTATTTCATCTCATCGGATTATTTGATTCACCATGACTAGCTAAAATTTGCAAGGCCATCATCACCGAACCGTAGCCTAATTTTGTTGGCTGTCAAAAATTTCCAAAAACTTCAACACTACTCAACATGGGAAAAATTGCAATATTCCAACCTAGTTTCGTTAGAACAAAAACTACTTTTGCATGGATTTCTCACATTTTCACGTAATCTGAAAAATACATGCTCAAACCAAATTTAGTCTTTCATCTATGTTTTTTTATAGAATCTGAAATTATGCTTTCCAAATTTTTTTGAGCGAACCAATAATAACAAAAACTCATCAAACATTGTCTATACAAAGTGAGTTCAGACATACTTACGGAAGTTCAAAAAACTTAACAAACAGTGTAAAAAGGGTTTGCCATTCCACTCGTCTGTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGACATATGAGAATCTGAGTG</pcr_primer_p1>
		<pcr_primer_p2>AGTTTTTGGAAATTTTTGACAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCTGACATATGAGAATCTGAGTGACAGATGGAGTATTGGAGATGAGAAAAGTGGCAGAGTAAGAAGATATAAAGTGCAAAGAGGTCAAGAAGAGTTTAAAATTTGATTGAAAAGTTTGGAATGCCAGAACTATTTTTATTTCATCTCATCGGATTATTTGATTCACCATGACTAGCTAAAATTTGCAAGGCCATCATCACCGAACCGTAGCCTAATTTTGTTGGCTGTCAAAAATTTCCAAAAACT</canonical_amplicon>
		<polymorphic_amplicon>TCTGACATATGAGAATCTGAGTGACAGATGGAGTATTGGAGATGAGAAAAGTGRCAGAGTAAGAAGATATAAAGTGCAAAGAGGTCAAGAAGAGTTTAAAATTTGATTGAAAAGTTTGGAATGCCAGAACTATTTTTATTTCATCTCATCGGATTATTTGATTCACCATGACTAGCTAAAATTTGCAAGGCCATCATCACCGAACCGTAGCCTAATTTTGTTGGCTGTCAAAAATTTCCAAAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31346</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>676572</contig_pos>
        <strand></strand>
        <context>CGGATTATTT[G/A]ATTCACCATG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAAGTTTGGAATGCCAGAACTATTTTTATTTCATCTCATCGGATTATTT</left_flank>
        <right_flank>ATTCACCATGACTAGCTAAAATTTGCAAGGCCATCATCACCGAACCGTAG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATGTAAGTTGAGGAGTCATATACAGTACCGGTCAGTAGGGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGAACTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAAAAATGACAATAATTGATTTTTGATGCCAAAATGCATCATTTGTAAAAGTGTGGCATCATACTTCTGACATATGAGAATCTGAGTGACAGATGGAGTATTGGAGATGAGAAAAGTGGCAGAGTAAGAAGATATAAAGTGCAAAGAGGTCAAGAAGAGTTTAAAATTTGATTGAAAAGTTTGGAATGCCAGAACTATTTTTATTTCATCTCATCGGATTATTTGATTCACCATGACTAGCTAAAATTTGCAAGGCCATCATCACCGAACCGTAGCCTAATTTTGTTGGCTGTCAAAAATTTCCAAAAACTTCAACACTACTCAACATGGGAAAAATTGCAATATTCCAACCTAGTTTCGTTAGAACAAAAACTACTTTTGCATGGATTTCTCACATTTTCACGTAATCTGAAAAATACATGCTCAAACCAAATTTAGTCTTTCATCTATGTTTTTTTATAGAATCTGAAATTATGCTTTCCAAATTTTTTTGAGCGAACCAATAATAACAAAAACTCATCAAACATTGTCTATACAAAGTGAGTTCAGACATACTTACGGAAGTTCAAAAAACTTAACAAACAGTGTAAAAAGGGTTTGCCATTCCACTCGTCTGTCTCAAGTTACCACTCAAAGGGTTTCGATTTTTTTTGGTTTTGTCTATCCTATTTTTTATTTCAAACTCTAATTTATAGTTTAAAATTTGTCTAGTTTAAGAACTGGGG</canonical>
            <polymorphic>AAAATGTAAGTTGAGGAGTCATATACAGTACCGGTCAGTAGGGTATACAGAACCATAATTGTCAAAATAGGAATTTTTGAGAAATTCTGTGAATACAAAGTTTTAAATCTAGGACTGTTTTACACCCTTCAAATTTTTCAAAGTAATCGGAAGCTTGACAGCTGAACTCCAGAATCCTGAAAATAGTCAAAATTGCCGAAAATCACCTGAAGAATGTTCTATTGTAAATGTTATTGACCGGTATTCTGAATTCAGGGAAAAAACAGATTGTGCTCGAAAAATGACAATAATTGATTTTTGATGCCAAAATGCATCATTTGTAAAAGTGTGGCATCATACTTCTGACATATGAGAATCTGAGTGACAGATGGAGTATTGGAGATGAGAAAAGTGGCAGAGTAAGAAGATATAAAGTGCAAAGAGGTCAAGAAGAGTTTAAAATTTGATTGAAAAGTTTGGAATGCCAGAACTATTTTTATTTCATCTCATCGGATTATTTRATTCACCATGACTAGCTAAAATTTGCAAGGCCATCATCACCGAACCGTAGCCTAATTTTGTTGGCTGTCAAAAATTTCCAAAAACTTCAACACTACTCAACATGGGAAAAATTGCAATATTCCAACCTAGTTTCGTTAGAACAAAAACTACTTTTGCATGGATTTCTCACATTTTCACGTAATCTGAAAAATACATGCTCAAACCAAATTTAGTCTTTCATCTATGTTTTTTTATAGAATCTGAAATTATGCTTTCCAAATTTTTTTGAGCGAACCAATAATAACAAAAACTCATCAAACATTGTCTATACAAAGTGAGTTCAGACATACTTACGGAAGTTCAAAAAACTTAACAAACAGTGTAAAAAGGGTTTGCCATTCCACTCGTCTGTCTCAAGTTACCACTCAAAGGGTTTCGATTTTTTTTGGTTTTGTCTATCCTATTTTTTATTTCAAACTCTAATTTATAGTTTAAAATTTGTCTAGTTTAAGAACTGGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>263 237 181 156 147 16</canonical_bands>
                <polymorphic_bands>384 263 181 156 16</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>263 237 181 172 147</canonical_bands>
                <polymorphic_bands>384 263 181 172</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTGAGTGACAGATGGAGTATT</pcr_primer_p1>
		<pcr_primer_p2>CATGTTGAGTAGTGTTGAAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTGAGTGACAGATGGAGTATTGGAGATGAGAAAAGTGGCAGAGTAAGAAGATATAAAGTGCAAAGAGGTCAAGAAGAGTTTAAAATTTGATTGAAAAGTTTGGAATGCCAGAACTATTTTTATTTCATCTCATCGGATTATTTGATTCACCATGACTAGCTAAAATTTGCAAGGCCATCATCACCGAACCGTAGCCTAATTTTGTTGGCTGTCAAAAATTTCCAAAAACTTCAACACTACTCAACATG</canonical_amplicon>
		<polymorphic_amplicon>ATCTGAGTGACAGATGGAGTATTGGAGATGAGAAAAGTGGCAGAGTAAGAAGATATAAAGTGCAAAGAGGTCAAGAAGAGTTTAAAATTTGATTGAAAAGTTTGGAATGCCAGAACTATTTTTATTTCATCTCATCGGATTATTTRATTCACCATGACTAGCTAAAATTTGCAAGGCCATCATCACCGAACCGTAGCCTAATTTTGTTGGCTGTCAAAAATTTCCAAAAACTTCAACACTACTCAACATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31347</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>691326</contig_pos>
        <strand>+</strand>
        <context>TACTAAACTG[A/C]CACTCCCCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTTCATCTTTGACGCGGAAGTTCGTAACCCATAGGAAGTACTAAACTG</left_flank>
        <right_flank>CACTCCCCAAGAAAAGGATCCAAGGAAAAACGAACTCATATGAAAACAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGGCCACCATGGTAATGGCCCAGAAATGATCTAAAATGTTCCTGGTATGTTTTCTATGTCATTTTGAAGTAGTGGCCTAATTTTTGTAAAATTAATTTACTAGACCACCACTTCAAATGACCTAAAGAACACACCATGGGCATGCTAGGTCACTTCTGGGTAACTCACCACGGTGGCCTAGAAAGCTCAACTTGCAAAAGTTAGACCACCACTTCAAAACAACCTGGAAAATACACCATGTGGATATCCCACCAATTCTAGGCCATCTCGCCATGGTGGCCTAGAAAACTCAGCTTGAGAAAGTTATGTCACAACTTCAAAATAACCAAAAAACGAAGGAAAAGCTTCCTGAGGACACCTATAGCCGAACCCTTGTCTGTTTCTAACCCAGTAGGAAAATTCGCCCCATTGATAAAAGGAGTCATTTTGACCCAATTCCCAAGATTGTTTTTCATCTTTGACGCGGAAGTTCGTAACCCATAGGAAGTACTAAACTGACACTCCCCAAGAAAAGGATCCAAGGAAAAACGAACTCATATGAAAACAGGAAATTCGAAAATTAAAAAATGCAAAAGTAGGAAGATGGCCTGGTCTGGCAGGAAATTAGAAAAAATGGGAACAGAGTTGCCAAAAGAAGAAGACCAGAAGCAAAATTTAAGGGAGAGAGATAGGGAAAAGAAGAGTCAACATAGAAGGGATTGGATTAAAGGAAACGTTTAGTTTAGCCAGTAGTCACACACACTGAATTTCACATACACGATTTCATTCGTTAGTCACGGATAAGCATCGAAAAGCACAAGTGACTTTGTCTTCTTGAGAAAAGAAGTCGTATGTAAATTTGCTTTTTTTTGTTCGAAAAGGAAATGGAATGGAGGGGCGAAAAAAGGATAATACTGGGGTGGTCCAAATGTAAATAAGCAGGTGGCAGATGGTGAGGGACAAAATATGAATGCACTTCTTGAGAGAGAACGGCGGAGAAGACGTCACGAGATGGGGAA</canonical>
            <polymorphic>CTAGGCCACCATGGTAATGGCCCAGAAATGATCTAAAATGTTCCTGGTATGTTTTCTATGTCATTTTGAAGTAGTGGCCTAATTTTTGTAAAATTAATTTACTAGACCACCACTTCAAATGACCTAAAGAACACACCATGGGCATGCTAGGTCACTTCTGGGTAACTCACCACGGTGGCCTAGAAAGCTCAACTTGCAAAAGTTAGACCACCACTTCAAAACAACCTGGAAAATACACCATGTGGATATCCCACCAATTCTAGGCCATCTCGCCATGGTGGCCTAGAAAACTCAGCTTGAGAAAGTTATGTCACAACTTCAAAATAACCAAAAAACGAAGGAAAAGCTTCCTGAGGACACCTATAGCCGAACCCTTGTCTGTTTCTAACCCAGTAGGAAAATTCGCCCCATTGATAAAAGGAGTCATTTTGACCCAATTCCCAAGATTGTTTTTCATCTTTGACGCGGAAGTTCGTAACCCATAGGAAGTACTAAACTGMCACTCCCCAAGAAAAGGATCCAAGGAAAAACGAACTCATATGAAAACAGGAAATTCGAAAATTAAAAAATGCAAAAGTAGGAAGATGGCCTGGTCTGGCAGGAAATTAGAAAAAATGGGAACAGAGTTGCCAAAAGAAGAAGACCAGAAGCAAAATTTAAGGGAGAGAGATAGGGAAAAGAAGAGTCAACATAGAAGGGATTGGATTAAAGGAAACGTTTAGTTTAGCCAGTAGTCACACACACTGAATTTCACATACACGATTTCATTCGTTAGTCACGGATAAGCATCGAAAAGCACAAGTGACTTTGTCTTCTTGAGAAAAGAAGTCGTATGTAAATTTGCTTTTTTTTGTTCGAAAAGGAAATGGAATGGAGGGGCGAAAAAAGGATAATACTGGGGTGGTCCAAATGTAAATAAGCAGGTGGCAGATGGTGAGGGACAAAATATGAATGCACTTCTTGAGAGAGAACGGCGGAGAAGACGTCACGAGATGGGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGATTGTTTTTCATCTTTGAC</pcr_primer_p1>
		<pcr_primer_p2>CTTCTTTTCCCTATCTCTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CAAGATTGTTTTTCATCTTTGACGCGGAAGTTCGTAACCCATAGGAAGTACTAAACTGACACTCCCCAAGAAAAGGATCCAAGGAAAAACGAACTCATATGAAAACAGGAAATTCGAAAATTAAAAAATGCAAAAGTAGGAAGATGGCCTGGTCTGGCAGGAAATTAGAAAAAATGGGAACAGAGTTGCCAAAAGAAGAAGACCAGAAGCAAAATTTAAGGGAGAGAGATAGGGAAAAGAAG</canonical_amplicon>
		<polymorphic_amplicon>CAAGATTGTTTTTCATCTTTGACGCGGAAGTTCGTAACCCATAGGAAGTACTAAACTGMCACTCCCCAAGAAAAGGATCCAAGGAAAAACGAACTCATATGAAAACAGGAAATTCGAAAATTAAAAAATGCAAAAGTAGGAAGATGGCCTGGTCTGGCAGGAAATTAGAAAAAATGGGAACAGAGTTGCCAAAAGAAGAAGACCAGAAGCAAAATTTAAGGGAGAGAGATAGGGAAAAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31348</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>691392</contig_pos>
        <strand>+</strand>
        <context>MGAAAATTAA[A/C]AAATGCAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGATCCAAGGAAAAACGAACTCATATGAAAACAGGAAATTCGAAAATTAA</left_flank>
        <right_flank>AAATGCAAAAGTAGGAAGATGGCCTGGTCTGGCAGGAAATTAGAAAAAAT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAGTAGTGGCCTAATTTTTGTAAAATTAATTTACTAGACCACCACTTCAAATGACCTAAAGAACACACCATGGGCATGCTAGGTCACTTCTGGGTAACTCACCACGGTGGCCTAGAAAGCTCAACTTGCAAAAGTTAGACCACCACTTCAAAACAACCTGGAAAATACACCATGTGGATATCCCACCAATTCTAGGCCATCTCGCCATGGTGGCCTAGAAAACTCAGCTTGAGAAAGTTATGTCACAACTTCAAAATAACCAAAAAACGAAGGAAAAGCTTCCTGAGGACACCTATAGCCGAACCCTTGTCTGTTTCTAACCCAGTAGGAAAATTCGCCCCATTGATAAAAGGAGTCATTTTGACCCAATTCCCAAGATTGTTTTTCATCTTTGACGCGGAAGTTCGTAACCCATAGGAAGTACTAAACTGACACTCCCCAAGAAAAGGATCCAAGGAAAAACGAACTCATATGAAAACAGGAAATTCGAAAATTAAAAAATGCAAAAGTAGGAAGATGGCCTGGTCTGGCAGGAAATTAGAAAAAATGGGAACAGAGTTGCCAAAAGAAGAAGACCAGAAGCAAAATTTAAGGGAGAGAGATAGGGAAAAGAAGAGTCAACATAGAAGGGATTGGATTAAAGGAAACGTTTAGTTTAGCCAGTAGTCACACACACTGAATTTCACATACACGATTTCATTCGTTAGTCACGGATAAGCATCGAAAAGCACAAGTGACTTTGTCTTCTTGAGAAAAGAAGTCGTATGTAAATTTGCTTTTTTTTGTTCGAAAAGGAAATGGAATGGAGGGGCGAAAAAAGGATAATACTGGGGTGGTCCAAATGTAAATAAGCAGGTGGCAGATGGTGAGGGACAAAATATGAATGCACTTCTTGAGAGAGAACGGCGGAGAAGACGTCACGAGATGGGGAAAAAAGCTGCTGAAGACTTAATCTGATTACTCGGGAAATTTCTGTTGACTTCTGGAAAGTGCGAGAA</canonical>
            <polymorphic>TGAAGTAGTGGCCTAATTTTTGTAAAATTAATTTACTAGACCACCACTTCAAATGACCTAAAGAACACACCATGGGCATGCTAGGTCACTTCTGGGTAACTCACCACGGTGGCCTAGAAAGCTCAACTTGCAAAAGTTAGACCACCACTTCAAAACAACCTGGAAAATACACCATGTGGATATCCCACCAATTCTAGGCCATCTCGCCATGGTGGCCTAGAAAACTCAGCTTGAGAAAGTTATGTCACAACTTCAAAATAACCAAAAAACGAAGGAAAAGCTTCCTGAGGACACCTATAGCCGAACCCTTGTCTGTTTCTAACCCAGTAGGAAAATTCGCCCCATTGATAAAAGGAGTCATTTTGACCCAATTCCCAAGATTGTTTTTCATCTTTGACGCGGAAGTTCGTAACCCATAGGAAGTACTAAACTGACACTCCCCAAGAAAAGGATCCAAGGAAAAACGAACTCATATGAAAACAGGAAATTCGAAAATTAAMAAATGCAAAAGTAGGAAGATGGCCTGGTCTGGCAGGAAATTAGAAAAAATGGGAACAGAGTTGCCAAAAGAAGAAGACCAGAAGCAAAATTTAAGGGAGAGAGATAGGGAAAAGAAGAGTCAACATAGAAGGGATTGGATTAAAGGAAACGTTTAGTTTAGCCAGTAGTCACACACACTGAATTTCACATACACGATTTCATTCGTTAGTCACGGATAAGCATCGAAAAGCACAAGTGACTTTGTCTTCTTGAGAAAAGAAGTCGTATGTAAATTTGCTTTTTTTTGTTCGAAAAGGAAATGGAATGGAGGGGCGAAAAAAGGATAATACTGGGGTGGTCCAAATGTAAATAAGCAGGTGGCAGATGGTGAGGGACAAAATATGAATGCACTTCTTGAGAGAGAACGGCGGAGAAGACGTCACGAGATGGGGAAAAAAGCTGCTGAAGACTTAATCTGATTACTCGGGAAATTTCTGTTGACTTCTGGAAAGTGCGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGTAACCCATAGGAAGTACTAA</pcr_primer_p1>
		<pcr_primer_p2>CTTTAATCCAATCCCTTCTATGT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TCGTAACCCATAGGAAGTACTAAACTGACACTCCCCAAGAAAAGGATCCAAGGAAAAACGAACTCATATGAAAACAGGAAATTCGAAAATTAAAAAATGCAAAAGTAGGAAGATGGCCTGGTCTGGCAGGAAATTAGAAAAAATGGGAACAGAGTTGCCAAAAGAAGAAGACCAGAAGCAAAATTTAAGGGAGAGAGATAGGGAAAAGAAGAGTCAACATAGAAGGGATTGGATTAAAG</canonical_amplicon>
		<polymorphic_amplicon>TCGTAACCCATAGGAAGTACTAAACTGACACTCCCCAAGAAAAGGATCCAAGGAAAAACGAACTCATATGAAAACAGGAAATTCGAAAATTAAMAAATGCAAAAGTAGGAAGATGGCCTGGTCTGGCAGGAAATTAGAAAAAATGGGAACAGAGTTGCCAAAAGAAGAAGACCAGAAGCAAAATTTAAGGGAGAGAGATAGGGAAAAGAAGAGTCAACATAGAAGGGATTGGATTAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31349</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>799328</contig_pos>
        <strand></strand>
        <context>ggacccctat[T/C]tttgaamttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAAAGTCCTAAAATAAGGGATCTCAAAAAGTACTATTCGGGACCCCTAT</left_flank>
        <right_flank>TTTGAACTTTGAGCCAATTTATCTCGGTTCCTGCAAAAGATATAAAAAAG</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTTGAAAGTGTAGGTGTTTTGAAGTTAGACGTTAGAATGATCTGGAAAACACATCTGGGGCATGTTAGGCTATTCCTAGGCCATTTTACCATGTGGCCTAGAAAACTTAACTTGCAAAAGTTAGGCCACAACTTCGAAATGACCTAGAAAACATACGAGGGGAACATTAGACAATCTCTAGGTCTCTTTAACGTGGTGGCTTAGAAAACGCAATCAGTAAAAGTTAGGCCACCATATTGCAAGTTGAGTTTTATAGGCCACCGATCTTTATGGTCTAGAAATGAATTGATTTTCGAAATTAGCCGTTTTCTGAAGATTCCATACTACAAATTGTTTATATCTAGATAAGAAAATGTGAGAACAACATTGGATTCTTCTTCGTATCCTTTGGAGATACAAGGAGCTGTAGTTAAACCCTGTTTTGAATTTTTTGGATTCATGAAAACAAAAAGTCCTAAAATAAGGGATCTCAAAAAGTACTATTCGGGACCCCTATTTTTGAACTTTGAGCCAATTTATCTCGGTTCCTGCAAAAGATATAAAAAAGTTGTCAACTGATAAATTGCTTATCATAATATCACAATTTTTATTAGTTGACACTTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAAACTCGGGTTAGAACTAATAAAATTTTTTCCTCAGAATGAGAAGCGCACAAATGGCTCAAAAAGCGCAGTTGGCACCTCAATTAGCGGCTGCTGCACCAGTTCCTATGGACCCTTATCAGCAATATCTTCAATATCAAATGTACCAACAAATGGAGATGCCGCCTCAAGCAGCAGCACCCTACTCTCCATTTGGCGTATATGGTCCAATATATAGAGGTGGGAAAAACTTTTTTCCGAAAAAAGTGGAGCCTTTAAGAATGGGGTGGTTCAAAGATCCTCCTCCAGAATCCTAAATT</canonical>
            <polymorphic>CAATTTGAAAGTGTAGGTGTTTTGAAGTTAGACGTTAGAATGATCTGGAAAACACATCTGGGGCATGTTAGGCTATTCCTAGGCCATTTTACCATGTGGCCTAGAAAACTTAACTTGCAAAAGTTAGGCCACAACTTCGAAATGACCTAGAAAACATACGAGGGGAACATTAGACAATCTCTAGGTCTCTTTAACGTGGTGGCTTAGAAAACGCAATCAGTAAAAGTTAGGCCACCATATTGCAAGTTGAGTTTTATAGGCCACCGATCTTTATGGTCTAGAAATGAATTGATTTTCGAAATTAGCCGTTTTCTGAAGATTCCATACTACAAATTGTTTATATCTAGATAAGAAAATGTGAGAACAACATTGGATTCTTCTTCGTATCCTTTGGAGATACAAGGAGCTGTAGTTAAACCCTGTTTTGAATTTTTTGGATTCATGAAAACAAAAAGTCCTAAAATAAGGGATCTCAAAAAGTACTATTCGGGACCCCTATYTTTGAACTTTGAGCCAATTTATCTCGGTTCCTGCAAAAGATATAAAAAAGTTGTCAACTGATAAATTGCTTATCATAATATCACAATTTTTATTAGTTGACACTTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAAACTCGGGTTAGAACTAATAAAATTTTTTCCTCAGAATGAGAAGCGCACAAATGGCTCAAAAAGCGCAGTTGGCACCTCAATTAGCGGCTGCTGCACCAGTTCCTATGGACCCTTATCAGCAATATCTTCAATATCAAATGTACCAACAAATGGAGATGCCGCCTCAAGCAGCAGCACCCTACTCTCCATTTGGCGTATATGGTCCAATATATAGAGGTGGGAAAAACTTTTTTCCGAAAAAAGTGGAGCCTTTAAGAATGGGGTGGTTCAAAGATCCTCCTCCAGAATCCTAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTAAACCCTGTTTTGAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTAACACCGATCTGAATATCT</pcr_primer_p2>
		<pcr_amplicon_size>293</pcr_amplicon_size>
		<canonical_amplicon>GTTAAACCCTGTTTTGAATTTTTTGGATTCATGAAAACAAAAAGTCCTAAAATAAGGGATCTCAAAAAGTACTATTCGGGACCCCTATTTTTGAACTTTGAGCCAATTTATCTCGGTTCCTGCAAAAGATATAAAAAAGTTGTCAACTGATAAATTGCTTATCATAATATCACAATTTTTATTAGTTGACACTTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTTAAACCCTGTTTTGAATTTTTTGGATTCATGAAAACAAAAAGTCCTAAAATAAGGGATCTCAAAAAGTACTATTCGGGACCCCTATYTTTGAACTTTGAGCCAATTTATCTCGGTTCCTGCAAAAGATATAAAAAAGTTGTCAACTGATAAATTGCTTATCATAATATCACAATTTTTATTAGTTGACACTTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31350</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>799335</contig_pos>
        <strand></strand>
        <context>tatytttgaa[C/A]tttgagccaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CCTAAAATAAGGGATCTCAAAAAGTACTATTCGGGACCCCTATTTTTGAA</left_flank>
        <right_flank>TTTGAGCCAATTTATCTCGGTTCCTGCAAAAGATATAAAAAAGTTGTCAA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTGTAGGTGTTTTGAAGTTAGACGTTAGAATGATCTGGAAAACACATCTGGGGCATGTTAGGCTATTCCTAGGCCATTTTACCATGTGGCCTAGAAAACTTAACTTGCAAAAGTTAGGCCACAACTTCGAAATGACCTAGAAAACATACGAGGGGAACATTAGACAATCTCTAGGTCTCTTTAACGTGGTGGCTTAGAAAACGCAATCAGTAAAAGTTAGGCCACCATATTGCAAGTTGAGTTTTATAGGCCACCGATCTTTATGGTCTAGAAATGAATTGATTTTCGAAATTAGCCGTTTTCTGAAGATTCCATACTACAAATTGTTTATATCTAGATAAGAAAATGTGAGAACAACATTGGATTCTTCTTCGTATCCTTTGGAGATACAAGGAGCTGTAGTTAAACCCTGTTTTGAATTTTTTGGATTCATGAAAACAAAAAGTCCTAAAATAAGGGATCTCAAAAAGTACTATTCGGGACCCCTATTTTTGAACTTTGAGCCAATTTATCTCGGTTCCTGCAAAAGATATAAAAAAGTTGTCAACTGATAAATTGCTTATCATAATATCACAATTTTTATTAGTTGACACTTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAAACTCGGGTTAGAACTAATAAAATTTTTTCCTCAGAATGAGAAGCGCACAAATGGCTCAAAAAGCGCAGTTGGCACCTCAATTAGCGGCTGCTGCACCAGTTCCTATGGACCCTTATCAGCAATATCTTCAATATCAAATGTACCAACAAATGGAGATGCCGCCTCAAGCAGCAGCACCCTACTCTCCATTTGGCGTATATGGTCCAATATATAGAGGTGGGAAAAACTTTTTTCCGAAAAAAGTGGAGCCTTTAAGAATGGGGTGGTTCAAAGATCCTCCTCCAGAATCCTAAATTATTCAAG</canonical>
            <polymorphic>AAAGTGTAGGTGTTTTGAAGTTAGACGTTAGAATGATCTGGAAAACACATCTGGGGCATGTTAGGCTATTCCTAGGCCATTTTACCATGTGGCCTAGAAAACTTAACTTGCAAAAGTTAGGCCACAACTTCGAAATGACCTAGAAAACATACGAGGGGAACATTAGACAATCTCTAGGTCTCTTTAACGTGGTGGCTTAGAAAACGCAATCAGTAAAAGTTAGGCCACCATATTGCAAGTTGAGTTTTATAGGCCACCGATCTTTATGGTCTAGAAATGAATTGATTTTCGAAATTAGCCGTTTTCTGAAGATTCCATACTACAAATTGTTTATATCTAGATAAGAAAATGTGAGAACAACATTGGATTCTTCTTCGTATCCTTTGGAGATACAAGGAGCTGTAGTTAAACCCTGTTTTGAATTTTTTGGATTCATGAAAACAAAAAGTCCTAAAATAAGGGATCTCAAAAAGTACTATTCGGGACCCCTATTTTTGAAMTTTGAGCCAATTTATCTCGGTTCCTGCAAAAGATATAAAAAAGTTGTCAACTGATAAATTGCTTATCATAATATCACAATTTTTATTAGTTGACACTTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAAACTCGGGTTAGAACTAATAAAATTTTTTCCTCAGAATGAGAAGCGCACAAATGGCTCAAAAAGCGCAGTTGGCACCTCAATTAGCGGCTGCTGCACCAGTTCCTATGGACCCTTATCAGCAATATCTTCAATATCAAATGTACCAACAAATGGAGATGCCGCCTCAAGCAGCAGCACCCTACTCTCCATTTGGCGTATATGGTCCAATATATAGAGGTGGGAAAAACTTTTTTCCGAAAAAAGTGGAGCCTTTAAGAATGGGGTGGTTCAAAGATCCTCCTCCAGAATCCTAAATTATTCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTAAACCCTGTTTTGAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTAACACCGATCTGAATATCT</pcr_primer_p2>
		<pcr_amplicon_size>293</pcr_amplicon_size>
		<canonical_amplicon>GTTAAACCCTGTTTTGAATTTTTTGGATTCATGAAAACAAAAAGTCCTAAAATAAGGGATCTCAAAAAGTACTATTCGGGACCCCTATTTTTGAACTTTGAGCCAATTTATCTCGGTTCCTGCAAAAGATATAAAAAAGTTGTCAACTGATAAATTGCTTATCATAATATCACAATTTTTATTAGTTGACACTTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTTAAACCCTGTTTTGAATTTTTTGGATTCATGAAAACAAAAAGTCCTAAAATAAGGGATCTCAAAAAGTACTATTCGGGACCCCTATTTTTGAAMTTTGAGCCAATTTATCTCGGTTCCTGCAAAAGATATAAAAAAGTTGTCAACTGATAAATTGCTTATCATAATATCACAATTTTTATTAGTTGACACTTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31351</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>799432</contig_pos>
        <strand></strand>
        <context>tagttgacac[T/A]tgtttgatat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCAACTGATAAATTGCTTATCATAATATCACAATTTTTATTAGTTGACAC</left_flank>
        <right_flank>TGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACTTAACTTGCAAAAGTTAGGCCACAACTTCGAAATGACCTAGAAAACATACGAGGGGAACATTAGACAATCTCTAGGTCTCTTTAACGTGGTGGCTTAGAAAACGCAATCAGTAAAAGTTAGGCCACCATATTGCAAGTTGAGTTTTATAGGCCACCGATCTTTATGGTCTAGAAATGAATTGATTTTCGAAATTAGCCGTTTTCTGAAGATTCCATACTACAAATTGTTTATATCTAGATAAGAAAATGTGAGAACAACATTGGATTCTTCTTCGTATCCTTTGGAGATACAAGGAGCTGTAGTTAAACCCTGTTTTGAATTTTTTGGATTCATGAAAACAAAAAGTCCTAAAATAAGGGATCTCAAAAAGTACTATTCGGGACCCCTATTTTTGAACTTTGAGCCAATTTATCTCGGTTCCTGCAAAAGATATAAAAAAGTTGTCAACTGATAAATTGCTTATCATAATATCACAATTTTTATTAGTTGACACTTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAAACTCGGGTTAGAACTAATAAAATTTTTTCCTCAGAATGAGAAGCGCACAAATGGCTCAAAAAGCGCAGTTGGCACCTCAATTAGCGGCTGCTGCACCAGTTCCTATGGACCCTTATCAGCAATATCTTCAATATCAAATGTACCAACAAATGGAGATGCCGCCTCAAGCAGCAGCACCCTACTCTCCATTTGGCGTATATGGTCCAATATATAGAGGTGGGAAAAACTTTTTTCCGAAAAAAGTGGAGCCTTTAAGAATGGGGTGGTTCAAAGATCCTCCTCCAGAATCCTAAATTATTCAAGAAGAAGTTATTCATTAGGAATTTGAATGGACCTTATTGGAATCTGGTTATTTCTTATTCCTTTCATTTGGATTGTTTTTACACCAAAAATTTTTGTG</canonical>
            <polymorphic>AAAACTTAACTTGCAAAAGTTAGGCCACAACTTCGAAATGACCTAGAAAACATACGAGGGGAACATTAGACAATCTCTAGGTCTCTTTAACGTGGTGGCTTAGAAAACGCAATCAGTAAAAGTTAGGCCACCATATTGCAAGTTGAGTTTTATAGGCCACCGATCTTTATGGTCTAGAAATGAATTGATTTTCGAAATTAGCCGTTTTCTGAAGATTCCATACTACAAATTGTTTATATCTAGATAAGAAAATGTGAGAACAACATTGGATTCTTCTTCGTATCCTTTGGAGATACAAGGAGCTGTAGTTAAACCCTGTTTTGAATTTTTTGGATTCATGAAAACAAAAAGTCCTAAAATAAGGGATCTCAAAAAGTACTATTCGGGACCCCTATTTTTGAACTTTGAGCCAATTTATCTCGGTTCCTGCAAAAGATATAAAAAAGTTGTCAACTGATAAATTGCTTATCATAATATCACAATTTTTATTAGTTGACACWTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAAACTCGGGTTAGAACTAATAAAATTTTTTCCTCAGAATGAGAAGCGCACAAATGGCTCAAAAAGCGCAGTTGGCACCTCAATTAGCGGCTGCTGCACCAGTTCCTATGGACCCTTATCAGCAATATCTTCAATATCAAATGTACCAACAAATGGAGATGCCGCCTCAAGCAGCAGCACCCTACTCTCCATTTGGCGTATATGGTCCAATATATAGAGGTGGGAAAAACTTTTTTCCGAAAAAAGTGGAGCCTTTAAGAATGGGGTGGTTCAAAGATCCTCCTCCAGAATCCTAAATTATTCAAGAAGAAGTTATTCATTAGGAATTTGAATGGACCTTATTGGAATCTGGTTATTTCTTATTCCTTTCATTTGGATTGTTTTTACACCAAAAATTTTTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTAAACCCTGTTTTGAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTAACACCGATCTGAATATCT</pcr_primer_p2>
		<pcr_amplicon_size>293</pcr_amplicon_size>
		<canonical_amplicon>GTTAAACCCTGTTTTGAATTTTTTGGATTCATGAAAACAAAAAGTCCTAAAATAAGGGATCTCAAAAAGTACTATTCGGGACCCCTATTTTTGAACTTTGAGCCAATTTATCTCGGTTCCTGCAAAAGATATAAAAAAGTTGTCAACTGATAAATTGCTTATCATAATATCACAATTTTTATTAGTTGACACTTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTTAAACCCTGTTTTGAATTTTTTGGATTCATGAAAACAAAAAGTCCTAAAATAAGGGATCTCAAAAAGTACTATTCGGGACCCCTATTTTTGAACTTTGAGCCAATTTATCTCGGTTCCTGCAAAAGATATAAAAAAGTTGTCAACTGATAAATTGCTTATCATAATATCACAATTTTTATTAGTTGACACWTGTTTGATATCTTGCATGGGAGCCGAGAAAAGTTAGCTCCTACTGGACAACATGGGGGCCCTTCTATTACAGGTTTAAGATATTCAGATCGGTGTTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31352</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>801633</contig_pos>
        <strand></strand>
        <context>cggccaattt[A/T]ctaacggaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATTCCTAGCTTTTCAGCAGTTTGCCGACACCATTTTTCGGCCAATTT</left_flank>
        <right_flank>CTAACGGAAAAGATGAAAAAACAGGAGCTTTTCGAAAATCGGCAAATATC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGCGGGAACTGAAACAAGGATAGAGACAATTGGATAGGAAGTGTGAAGTCATTTGAGAAATGAGGTCATTTAAAGAATGAGACGCTTTTAGTTCCCTCATTCATTTAGTCTGTGGGGGATACGCTTCAATTCACATTCTAAATAGTCGGGAGAGATAAAAAAGATAATGAAATAGACACGAACGCCGGAAGGGGGCAAGATTGTTCTTAATTTCAGAGATGAAAAGCTTAAAGATTTTGTGAAGCTTTTGGCTCTAGATTTTTATAGACTTTGCCGCTTGATCAGATACAAAAAACTCGTGTTTTCAGCTGGTTTTGAGAGTTTTAAAACATTTTCAAGAGCCTGGAGCTCGACTGTCAAGTTTCCGATCACTTGGAAAATTCTGGAGGATGTAAAACACTTGGAAAATTCTGGAGGATGTAAAATGTAAACTTACAGAATTTTTTGAAAATTCCTAGCTTTTCAGCAGTTTGCCGACACCATTTTTCGGCCAATTTACTAACGGAAAAGATGAAAAAACAGGAGCTTTTCGAAAATCGGCAAATATCTGAAAAGCTAGGAATTTTCGAAAAACTCTCTGAATGCAATGTTCTCAATCTTGGTCTGCTGTATAAAATCTAGAAAATTGTGTTAAAACAGTTGAAAAACGCTCAAAATATTGCAAAAAACGGCTAAAATCTTGAAATTAGAGCCTTAACTCTGCCTAAAATCGCCTGAACTAGTTTAAGTTGACTTTAAAGGCCCAAGACCGAAATTAGATTTAAAATGAGCTAAATTGGCTGTGAAAAGGTTCGAAATACTTTAAATTTGATCCAGAACCAATTTAGAATGGTCTGAAATAGTTCAAATTTGATCATAATATGCCAGGTGTTTTCCAAAAACTCTATGAATACAAGGTTTCAATCTAGGTCTGCTTAAAGGTTGGGGTACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAAT</canonical>
            <polymorphic>CTCGCGGGAACTGAAACAAGGATAGAGACAATTGGATAGGAAGTGTGAAGTCATTTGAGAAATGAGGTCATTTAAAGAATGAGACGCTTTTAGTTCCCTCATTCATTTAGTCTGTGGGGGATACGCTTCAATTCACATTCTAAATAGTCGGGAGAGATAAAAAAGATAATGAAATAGACACGAACGCCGGAAGGGGGCAAGATTGTTCTTAATTTCAGAGATGAAAAGCTTAAAGATTTTGTGAAGCTTTTGGCTCTAGATTTTTATAGACTTTGCCGCTTGATCAGATACAAAAAACTCGTGTTTTCAGCTGGTTTTGAGAGTTTTAAAACATTTTCAAGAGCCTGGAGCTCGACTGTCAAGTTTCCGATCACTTGGAAAATTCTGGAGGATGTAAAACACTTGGAAAATTCTGGAGGATGTAAAATGTAAACTTACAGAATTTTTTGAAAATTCCTAGCTTTTCAGCAGTTTGCCGACACCATTTTTCGGCCAATTTWCTAACGGAAAAGATGAAAAAACAGGAGCTTTTCGAAAATCGGCAAATATCTGAAAAGCTAGGAATTTTCGAAAAACTCTCTGAATGCAATGTTCTCAATCTTGGTCTGCTGTATAAAATCTAGAAAATTGTGTTAAAACAGTTGAAAAACGCTCAAAATATTGCAAAAAACGGCTAAAATCTTGAAATTAGAGCCTTAACTCTGCCTAAAATCGCCTGAACTAGTTTAAGTTGACTTTAAAGGCCCAAGACCGAAATTAGATTTAAAATGAGCTAAATTGGCTGTGAAAAGGTTCGAAATACTTTAAATTTGATCCAGAACCAATTTAGAATGGTCTGAAATAGTTCAAATTTGATCATAATATGCCAGGTGTTTTCCAAAAACTCTATGAATACAAGGTTTCAATCTAGGTCTGCTTAAAGGTTGGGGTACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTTTTGGCTCTAGATTTTTAT</pcr_primer_p1>
		<pcr_primer_p2>AACTACGAAAAATCTCCTGTACC</pcr_primer_p2>
		<pcr_amplicon_size>706</pcr_amplicon_size>
		<canonical_amplicon>AGCTTTTGGCTCTAGATTTTTATAGACTTTGCCGCTTGATCAGATACAAAAAACTCGTGTTTTCAGCTGGTTTTGAGAGTTTTAAAACATTTTCAAGAGCCTGGAGCTCGACTGTCAAGTTTCCGATCACTTGGAAAATTCTGGAGGATGTAAAACACTTGGAAAATTCTGGAGGATGTAAAATGTAAACTTACAGAATTTTTTGAAAATTCCTAGCTTTTCAGCAGTTTGCCGACACCATTTTTCGGCCAATTTACTAACGGAAAAGATGAAAAAACAGGAGCTTTTCGAAAATCGGCAAATATCTGAAAAGCTAGGAATTTTCGAAAAACTCTCTGAATGCAATGTTCTCAATCTTGGTCTGCTGTATAAAATCTAGAAAATTGTGTTAAAACAGTTGAAAAACGCTCAAAATATTGCAAAAAACGGCTAAAATCTTGAAATTAGAGCCTTAACTCTGCCTAAAATCGCCTGAACTAGTTTAAGTTGACTTTAAAGGCCCAAGACCGAAATTAGATTTAAAATGAGCTAAATTGGCTGTGAAAAGGTTCGAAATACTTTAAATTTGATCCAGAACCAATTTAGAATGGTCTGAAATAGTTCAAATTTGATCATAATATGCCAGGTGTTTTCCAAAAACTCTATGAATACAAGGTTTCAATCTAGGTCTGCTTAAAGGTTGGGGTACAGGAGATTTTTCGTAGTT</canonical_amplicon>
		<polymorphic_amplicon>AGCTTTTGGCTCTAGATTTTTATAGACTTTGCCGCTTGATCAGATACAAAAAACTCGTGTTTTCAGCTGGTTTTGAGAGTTTTAAAACATTTTCAAGAGCCTGGAGCTCGACTGTCAAGTTTCCGATCACTTGGAAAATTCTGGAGGATGTAAAACACTTGGAAAATTCTGGAGGATGTAAAATGTAAACTTACAGAATTTTTTGAAAATTCCTAGCTTTTCAGCAGTTTGCCGACACCATTTTTCGGCCAATTTWCTAACGGAAAAGATGAAAAAACAGGAGCTTTTCGAAAATCGGCAAATATCTGAAAAGCTAGGAATTTTCGAAAAACTCTCTGAATGCAATGTTCTCAATCTTGGTCTGCTGTATAAAATCTAGAAAATTGTGTTAAAACAGTTGAAAAACGCTCAAAATATTGCAAAAAACGGCTAAAATCTTGAAATTAGAGCCTTAACTCTGCCTAAAATCGCCTGAACTAGTTTAAGTTGACTTTAAAGGCCCAAGACCGAAATTAGATTTAAAATGAGCTAAATTGGCTGTGAAAAGGTTCGAAATACTTTAAATTTGATCCAGAACCAATTTAGAATGGTCTGAAATAGTTCAAATTTGATCATAATATGCCAGGTGTTTTCCAAAAACTCTATGAATACAAGGTTTCAATCTAGGTCTGCTTAAAGGTTGGGGTACAGGAGATTTTTCGTAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31353</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>801656</contig_pos>
        <strand></strand>
        <context>atgaaaaaac[A/T]ggagcttttc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGCCGACACCATTTTTCGGCCAATTTACTAACGGAAAAGATGAAAAAAC</left_flank>
        <right_flank>GGAGCTTTTCGAAAATCGGCAAATATCTGAAAAGCTAGGAATTTTCGAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGACAATTGGATAGGAAGTGTGAAGTCATTTGAGAAATGAGGTCATTTAAAGAATGAGACGCTTTTAGTTCCCTCATTCATTTAGTCTGTGGGGGATACGCTTCAATTCACATTCTAAATAGTCGGGAGAGATAAAAAAGATAATGAAATAGACACGAACGCCGGAAGGGGGCAAGATTGTTCTTAATTTCAGAGATGAAAAGCTTAAAGATTTTGTGAAGCTTTTGGCTCTAGATTTTTATAGACTTTGCCGCTTGATCAGATACAAAAAACTCGTGTTTTCAGCTGGTTTTGAGAGTTTTAAAACATTTTCAAGAGCCTGGAGCTCGACTGTCAAGTTTCCGATCACTTGGAAAATTCTGGAGGATGTAAAACACTTGGAAAATTCTGGAGGATGTAAAATGTAAACTTACAGAATTTTTTGAAAATTCCTAGCTTTTCAGCAGTTTGCCGACACCATTTTTCGGCCAATTTACTAACGGAAAAGATGAAAAAACAGGAGCTTTTCGAAAATCGGCAAATATCTGAAAAGCTAGGAATTTTCGAAAAACTCTCTGAATGCAATGTTCTCAATCTTGGTCTGCTGTATAAAATCTAGAAAATTGTGTTAAAACAGTTGAAAAACGCTCAAAATATTGCAAAAAACGGCTAAAATCTTGAAATTAGAGCCTTAACTCTGCCTAAAATCGCCTGAACTAGTTTAAGTTGACTTTAAAGGCCCAAGACCGAAATTAGATTTAAAATGAGCTAAATTGGCTGTGAAAAGGTTCGAAATACTTTAAATTTGATCCAGAACCAATTTAGAATGGTCTGAAATAGTTCAAATTTGATCATAATATGCCAGGTGTTTTCCAAAAACTCTATGAATACAAGGTTTCAATCTAGGTCTGCTTAAAGGTTGGGGTACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGT</canonical>
            <polymorphic>AGAGACAATTGGATAGGAAGTGTGAAGTCATTTGAGAAATGAGGTCATTTAAAGAATGAGACGCTTTTAGTTCCCTCATTCATTTAGTCTGTGGGGGATACGCTTCAATTCACATTCTAAATAGTCGGGAGAGATAAAAAAGATAATGAAATAGACACGAACGCCGGAAGGGGGCAAGATTGTTCTTAATTTCAGAGATGAAAAGCTTAAAGATTTTGTGAAGCTTTTGGCTCTAGATTTTTATAGACTTTGCCGCTTGATCAGATACAAAAAACTCGTGTTTTCAGCTGGTTTTGAGAGTTTTAAAACATTTTCAAGAGCCTGGAGCTCGACTGTCAAGTTTCCGATCACTTGGAAAATTCTGGAGGATGTAAAACACTTGGAAAATTCTGGAGGATGTAAAATGTAAACTTACAGAATTTTTTGAAAATTCCTAGCTTTTCAGCAGTTTGCCGACACCATTTTTCGGCCAATTTACTAACGGAAAAGATGAAAAAACWGGAGCTTTTCGAAAATCGGCAAATATCTGAAAAGCTAGGAATTTTCGAAAAACTCTCTGAATGCAATGTTCTCAATCTTGGTCTGCTGTATAAAATCTAGAAAATTGTGTTAAAACAGTTGAAAAACGCTCAAAATATTGCAAAAAACGGCTAAAATCTTGAAATTAGAGCCTTAACTCTGCCTAAAATCGCCTGAACTAGTTTAAGTTGACTTTAAAGGCCCAAGACCGAAATTAGATTTAAAATGAGCTAAATTGGCTGTGAAAAGGTTCGAAATACTTTAAATTTGATCCAGAACCAATTTAGAATGGTCTGAAATAGTTCAAATTTGATCATAATATGCCAGGTGTTTTCCAAAAACTCTATGAATACAAGGTTTCAATCTAGGTCTGCTTAAAGGTTGGGGTACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTTTTGGCTCTAGATTTTTAT</pcr_primer_p1>
		<pcr_primer_p2>AACTACGAAAAATCTCCTGTACC</pcr_primer_p2>
		<pcr_amplicon_size>706</pcr_amplicon_size>
		<canonical_amplicon>AGCTTTTGGCTCTAGATTTTTATAGACTTTGCCGCTTGATCAGATACAAAAAACTCGTGTTTTCAGCTGGTTTTGAGAGTTTTAAAACATTTTCAAGAGCCTGGAGCTCGACTGTCAAGTTTCCGATCACTTGGAAAATTCTGGAGGATGTAAAACACTTGGAAAATTCTGGAGGATGTAAAATGTAAACTTACAGAATTTTTTGAAAATTCCTAGCTTTTCAGCAGTTTGCCGACACCATTTTTCGGCCAATTTACTAACGGAAAAGATGAAAAAACAGGAGCTTTTCGAAAATCGGCAAATATCTGAAAAGCTAGGAATTTTCGAAAAACTCTCTGAATGCAATGTTCTCAATCTTGGTCTGCTGTATAAAATCTAGAAAATTGTGTTAAAACAGTTGAAAAACGCTCAAAATATTGCAAAAAACGGCTAAAATCTTGAAATTAGAGCCTTAACTCTGCCTAAAATCGCCTGAACTAGTTTAAGTTGACTTTAAAGGCCCAAGACCGAAATTAGATTTAAAATGAGCTAAATTGGCTGTGAAAAGGTTCGAAATACTTTAAATTTGATCCAGAACCAATTTAGAATGGTCTGAAATAGTTCAAATTTGATCATAATATGCCAGGTGTTTTCCAAAAACTCTATGAATACAAGGTTTCAATCTAGGTCTGCTTAAAGGTTGGGGTACAGGAGATTTTTCGTAGTT</canonical_amplicon>
		<polymorphic_amplicon>AGCTTTTGGCTCTAGATTTTTATAGACTTTGCCGCTTGATCAGATACAAAAAACTCGTGTTTTCAGCTGGTTTTGAGAGTTTTAAAACATTTTCAAGAGCCTGGAGCTCGACTGTCAAGTTTCCGATCACTTGGAAAATTCTGGAGGATGTAAAACACTTGGAAAATTCTGGAGGATGTAAAATGTAAACTTACAGAATTTTTTGAAAATTCCTAGCTTTTCAGCAGTTTGCCGACACCATTTTTCGGCCAATTTACTAACGGAAAAGATGAAAAAACWGGAGCTTTTCGAAAATCGGCAAATATCTGAAAAGCTAGGAATTTTCGAAAAACTCTCTGAATGCAATGTTCTCAATCTTGGTCTGCTGTATAAAATCTAGAAAATTGTGTTAAAACAGTTGAAAAACGCTCAAAATATTGCAAAAAACGGCTAAAATCTTGAAATTAGAGCCTTAACTCTGCCTAAAATCGCCTGAACTAGTTTAAGTTGACTTTAAAGGCCCAAGACCGAAATTAGATTTAAAATGAGCTAAATTGGCTGTGAAAAGGTTCGAAATACTTTAAATTTGATCCAGAACCAATTTAGAATGGTCTGAAATAGTTCAAATTTGATCATAATATGCCAGGTGTTTTCCAAAAACTCTATGAATACAAGGTTTCAATCTAGGTCTGCTTAAAGGTTGGGGTACAGGAGATTTTTCGTAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31354</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>801675</contig_pos>
        <strand></strand>
        <context>tcgaaaatcg[G/T]caaatatctg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCCAATTTACTAACGGAAAAGATGAAAAAACAGGAGCTTTTCGAAAATCG</left_flank>
        <right_flank>CAAATATCTGAAAAGCTAGGAATTTTCGAAAAACTCTCTGAATGCAATGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTGAAGTCATTTGAGAAATGAGGTCATTTAAAGAATGAGACGCTTTTAGTTCCCTCATTCATTTAGTCTGTGGGGGATACGCTTCAATTCACATTCTAAATAGTCGGGAGAGATAAAAAAGATAATGAAATAGACACGAACGCCGGAAGGGGGCAAGATTGTTCTTAATTTCAGAGATGAAAAGCTTAAAGATTTTGTGAAGCTTTTGGCTCTAGATTTTTATAGACTTTGCCGCTTGATCAGATACAAAAAACTCGTGTTTTCAGCTGGTTTTGAGAGTTTTAAAACATTTTCAAGAGCCTGGAGCTCGACTGTCAAGTTTCCGATCACTTGGAAAATTCTGGAGGATGTAAAACACTTGGAAAATTCTGGAGGATGTAAAATGTAAACTTACAGAATTTTTTGAAAATTCCTAGCTTTTCAGCAGTTTGCCGACACCATTTTTCGGCCAATTTACTAACGGAAAAGATGAAAAAACAGGAGCTTTTCGAAAATCGGCAAATATCTGAAAAGCTAGGAATTTTCGAAAAACTCTCTGAATGCAATGTTCTCAATCTTGGTCTGCTGTATAAAATCTAGAAAATTGTGTTAAAACAGTTGAAAAACGCTCAAAATATTGCAAAAAACGGCTAAAATCTTGAAATTAGAGCCTTAACTCTGCCTAAAATCGCCTGAACTAGTTTAAGTTGACTTTAAAGGCCCAAGACCGAAATTAGATTTAAAATGAGCTAAATTGGCTGTGAAAAGGTTCGAAATACTTTAAATTTGATCCAGAACCAATTTAGAATGGTCTGAAATAGTTCAAATTTGATCATAATATGCCAGGTGTTTTCCAAAAACTCTATGAATACAAGGTTTCAATCTAGGTCTGCTTAAAGGTTGGGGTACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCA</canonical>
            <polymorphic>GTGTGAAGTCATTTGAGAAATGAGGTCATTTAAAGAATGAGACGCTTTTAGTTCCCTCATTCATTTAGTCTGTGGGGGATACGCTTCAATTCACATTCTAAATAGTCGGGAGAGATAAAAAAGATAATGAAATAGACACGAACGCCGGAAGGGGGCAAGATTGTTCTTAATTTCAGAGATGAAAAGCTTAAAGATTTTGTGAAGCTTTTGGCTCTAGATTTTTATAGACTTTGCCGCTTGATCAGATACAAAAAACTCGTGTTTTCAGCTGGTTTTGAGAGTTTTAAAACATTTTCAAGAGCCTGGAGCTCGACTGTCAAGTTTCCGATCACTTGGAAAATTCTGGAGGATGTAAAACACTTGGAAAATTCTGGAGGATGTAAAATGTAAACTTACAGAATTTTTTGAAAATTCCTAGCTTTTCAGCAGTTTGCCGACACCATTTTTCGGCCAATTTACTAACGGAAAAGATGAAAAAACAGGAGCTTTTCGAAAATCGKCAAATATCTGAAAAGCTAGGAATTTTCGAAAAACTCTCTGAATGCAATGTTCTCAATCTTGGTCTGCTGTATAAAATCTAGAAAATTGTGTTAAAACAGTTGAAAAACGCTCAAAATATTGCAAAAAACGGCTAAAATCTTGAAATTAGAGCCTTAACTCTGCCTAAAATCGCCTGAACTAGTTTAAGTTGACTTTAAAGGCCCAAGACCGAAATTAGATTTAAAATGAGCTAAATTGGCTGTGAAAAGGTTCGAAATACTTTAAATTTGATCCAGAACCAATTTAGAATGGTCTGAAATAGTTCAAATTTGATCATAATATGCCAGGTGTTTTCCAAAAACTCTATGAATACAAGGTTTCAATCTAGGTCTGCTTAAAGGTTGGGGTACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTTTTGGCTCTAGATTTTTAT</pcr_primer_p1>
		<pcr_primer_p2>AACTACGAAAAATCTCCTGTACC</pcr_primer_p2>
		<pcr_amplicon_size>706</pcr_amplicon_size>
		<canonical_amplicon>AGCTTTTGGCTCTAGATTTTTATAGACTTTGCCGCTTGATCAGATACAAAAAACTCGTGTTTTCAGCTGGTTTTGAGAGTTTTAAAACATTTTCAAGAGCCTGGAGCTCGACTGTCAAGTTTCCGATCACTTGGAAAATTCTGGAGGATGTAAAACACTTGGAAAATTCTGGAGGATGTAAAATGTAAACTTACAGAATTTTTTGAAAATTCCTAGCTTTTCAGCAGTTTGCCGACACCATTTTTCGGCCAATTTACTAACGGAAAAGATGAAAAAACAGGAGCTTTTCGAAAATCGGCAAATATCTGAAAAGCTAGGAATTTTCGAAAAACTCTCTGAATGCAATGTTCTCAATCTTGGTCTGCTGTATAAAATCTAGAAAATTGTGTTAAAACAGTTGAAAAACGCTCAAAATATTGCAAAAAACGGCTAAAATCTTGAAATTAGAGCCTTAACTCTGCCTAAAATCGCCTGAACTAGTTTAAGTTGACTTTAAAGGCCCAAGACCGAAATTAGATTTAAAATGAGCTAAATTGGCTGTGAAAAGGTTCGAAATACTTTAAATTTGATCCAGAACCAATTTAGAATGGTCTGAAATAGTTCAAATTTGATCATAATATGCCAGGTGTTTTCCAAAAACTCTATGAATACAAGGTTTCAATCTAGGTCTGCTTAAAGGTTGGGGTACAGGAGATTTTTCGTAGTT</canonical_amplicon>
		<polymorphic_amplicon>AGCTTTTGGCTCTAGATTTTTATAGACTTTGCCGCTTGATCAGATACAAAAAACTCGTGTTTTCAGCTGGTTTTGAGAGTTTTAAAACATTTTCAAGAGCCTGGAGCTCGACTGTCAAGTTTCCGATCACTTGGAAAATTCTGGAGGATGTAAAACACTTGGAAAATTCTGGAGGATGTAAAATGTAAACTTACAGAATTTTTTGAAAATTCCTAGCTTTTCAGCAGTTTGCCGACACCATTTTTCGGCCAATTTACTAACGGAAAAGATGAAAAAACAGGAGCTTTTCGAAAATCGKCAAATATCTGAAAAGCTAGGAATTTTCGAAAAACTCTCTGAATGCAATGTTCTCAATCTTGGTCTGCTGTATAAAATCTAGAAAATTGTGTTAAAACAGTTGAAAAACGCTCAAAATATTGCAAAAAACGGCTAAAATCTTGAAATTAGAGCCTTAACTCTGCCTAAAATCGCCTGAACTAGTTTAAGTTGACTTTAAAGGCCCAAGACCGAAATTAGATTTAAAATGAGCTAAATTGGCTGTGAAAAGGTTCGAAATACTTTAAATTTGATCCAGAACCAATTTAGAATGGTCTGAAATAGTTCAAATTTGATCATAATATGCCAGGTGTTTTCCAAAAACTCTATGAATACAAGGTTTCAATCTAGGTCTGCTTAAAGGTTGGGGTACAGGAGATTTTTCGTAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31355</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>828647</contig_pos>
        <strand></strand>
        <context>ataaatttca[A/G]ctgataaatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTTGAGCTCAATTATCTCGGTTCCTTTGAAAAATATCTTATAAATTTCA</left_flank>
        <right_flank>CTGATAAATTATTTATCATAATACCAGCAATATTTCATCAGTTGTCACCT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAACTTGTGGAGGCGAGGATTGCGGGTGCGGCGCCGCTACCGGCTGAGCTACGCGGGCAAAGGAAAAGCAGCTTCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTGGCCCCAAAAATCCCTCGTAAAATCTCCTGTCCCCCCACCCTTAAGCATGTGTATTTTTATTTCTAAAAAAAGGTAGATTTCATGAGTTTTGAATCATGTTTCAGTTTAGAACTTCCTGCGGACTGCCCGATTTTAAAAAAATCAAAAGCATTTTTTTTGGAAAATCAATTTTTTTAATTATTAAAAATAAAATATACAAAATTTGTAGTTTTTCAGCAAGTCGTAGGTTGACGCTGTTTGAATCATACCGTAAACCCTGTAATAGAAGAGCCCCTACACTTTCAAACTTGAGCTCAATTATCTCGGTTCCTTTGAAAAATATCTTATAAATTTCAACTGATAAATTATTTATCATAATACCAGCAATATTTCATCAGTTGTCACCTTTTTAATATATATAACCGGAACCGAGATAAATTGGATCAAAAAGTTTATCAATTGAATTAAAAATGAAAACTTCAAAATTGCGAATGAAATTTGAAAAGAAACACACATATTTTCAAAAGTATAATATATTTTGAAAAGCTATAGAAAACTCATATTTCATGAGAAAGCAAATTTTTTCTTCAACTTTTCAATATCAAAAGAAAGAATTGATAAACTATCAACTACAAAAAATTCCGGCAGAAAAAAGTGCGAACCTGAAAAAATTGTGGTTAGACTTTTTCCTCCTCGTTCTTTTTTTTGAATTTCGAAATGTTTCACTAGAGAAGGGGATTTGGAAAACGAGAAGGAAGTGATGTGCTCCTTTTCTCTCCCAGAGCAAAGCTGCTCTCCCAGAGCAAAGCTGCTCCGAGTGCTCGTGCACTCAGAAAATGAAAAAAGAACGTGATGGC</canonical>
            <polymorphic>TTGAACTTGTGGAGGCGAGGATTGCGGGTGCGGCGCCGCTACCGGCTGAGCTACGCGGGCAAAGGAAAAGCAGCTTCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTTACGGTAGAATGCATACTCTGGCCCCAAAAATCCCTCGTAAAATCTCCTGTCCCCCCACCCTTAAGCATGTGTATTTTTATTTCTAAAAAAAGGTAGATTTCATGAGTTTTGAATCATGTTTCAGTTTAGAACTTCCTGCGGACTGCCCGATTTTAAAAAAATCAAAAGCATTTTTTTTGGAAAATCAATTTTTTTAATTATTAAAAATAAAATATACAAAATTTGTAGTTTTTCAGCAAGTCGTAGGTTGACGCTGTTTGAATCATACCGTAAACCCTGTAATAGAAGAGCCCCTACACTTTCAAACTTGAGCTCAATTATCTCGGTTCCTTTGAAAAATATCTTATAAATTTCARCTGATAAATTATTTATCATAATACCAGCAATATTTCATCAGTTGTCACCTTTTTAATATATATAACCGGAACCGAGATAAATTGGATCAAAAAGTTTATCAATTGAATTAAAAATGAAAACTTCAAAATTGCGAATGAAATTTGAAAAGAAACACACATATTTTCAAAAGTATAATATATTTTGAAAAGCTATAGAAAACTCATATTTCATGAGAAAGCAAATTTTTTCTTCAACTTTTCAATATCAAAAGAAAGAATTGATAAACTATCAACTACAAAAAATTCCGGCAGAAAAAAGTGCGAACCTGAAAAAATTGTGGTTAGACTTTTTCCTCCTCGTTCTTTTTTTTGAATTTCGAAATGTTTCACTAGAGAAGGGGATTTGGAAAACGAGAAGGAAGTGATGTGCTCCTTTTCTCTCCCAGAGCAAAGCTGCTCTCCCAGAGCAAAGCTGCTCCGAGTGCTCGTGCACTCAGAAAATGAAAAAAGAACGTGATGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGGTTGACGCTGTTTGAAT</pcr_primer_p1>
		<pcr_primer_p2>GCAATTTTGAAGTTTTCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TAGGTTGACGCTGTTTGAATCATACCGTAAACCCTGTAATAGAAGAGCCCCTACACTTTCAAACTTGAGCTCAATTATCTCGGTTCCTTTGAAAAATATCTTATAAATTTCAACTGATAAATTATTTATCATAATACCAGCAATATTTCATCAGTTGTCACCTTTTTAATATATATAACCGGAACCGAGATAAATTGGATCAAAAAGTTTATCAATTGAATTAAAAATGAAAACTTCAAAATTGC</canonical_amplicon>
		<polymorphic_amplicon>TAGGTTGACGCTGTTTGAATCATACCGTAAACCCTGTAATAGAAGAGCCCCTACACTTTCAAACTTGAGCTCAATTATCTCGGTTCCTTTGAAAAATATCTTATAAATTTCARCTGATAAATTATTTATCATAATACCAGCAATATTTCATCAGTTGTCACCTTTTTAATATATATAACCGGAACCGAGATAAATTGGATCAAAAAGTTTATCAATTGAATTAAAAATGAAAACTTCAAAATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31356</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>834784</contig_pos>
        <strand>+</strand>
        <context>TATGTTTTTT[C/T]TATTACTAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTGAGAACAGGCGCTACAGTAACCCCCTGAATAAAAGTTTATGTTTTTT</left_flank>
        <right_flank>TATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATAAATCAAAAACTCCAAAATCATTAATTCCGATGACATAACCGACGCCCCCAAAAGATATTTTGTAAACATTCATTTTGTTAAAAAAATAAGTAATAGCTCCTCGAGAACCTCTTTTCCAATTTCCAACTTCAGAATTCTAAAAATTCACTTTCTGGCAAATCTGGGAGCCGCGTCAGAGCTTCAGTAGATTCCTTCACCAGACATATCCACTAAAATCCAGTCTTTCCCTCCACATGTTTCTGCAAGCTTTCTGAAAACAATTTCAGCCGGAAGCCTACTGAAAGGTCGCTCTGAAAAAAGATCGGTCATAAGTCATGCTGTTCTGGAAAACATAAAACCGCAAAAGCAGGTGATGCTGTAAATGTGGAGAACTAATTTGAAAACATTGAAACGGGAAATTGGATTTTGGAAAGATTTACAGCAGAGAACAATTCATGTCTAGATTCTGAGAACAGGCGCTACAGTAACCCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATTCCAAAGATTTCTCGAGCACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGTAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATCCATCATGGTTCCCGTTGAATTTCTTCTATTTCATCCATTTTTCTATGGCCTATGTGCAATTTTTCT</canonical>
            <polymorphic>CAATAAATCAAAAACTCCAAAATCATTAATTCCGATGACATAACCGACGCCCCCAAAAGATATTTTGTAAACATTCATTTTGTTAAAAAAATAAGTAATAGCTCCTCGAGAACCTCTTTTCCAATTTCCAACTTCAGAATTCTAAAAATTCACTTTCTGGCAAATCTGGGAGCCGCGTCAGAGCTTCAGTAGATTCCTTCACCAGACATATCCACTAAAATCCAGTCTTTCCCTCCACATGTTTCTGCAAGCTTTCTGAAAACAATTTCAGCCGGAAGCCTACTGAAAGGTCGCTCTGAAAAAAGATCGGTCATAAGTCATGCTGTTCTGGAAAACATAAAACCGCAAAAGCAGGTGATGCTGTAAATGTGGAGAACTAATTTGAAAACATTGAAACGGGAAATTGGATTTTGGAAAGATTTACAGCAGAGAACAATTCATGTCTAGATTCTGAGAACAGGCGCTACAGTAACCCCCTGAATAAAAGTTTATGTTTTTTYTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATTCCAAAGATTTCTCGAGCACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGTAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATCCATCATGGTTCCCGTTGAATTTCTTCTATTTCATCCATTTTTCTATGGCCTATGTGCAATTTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTGGATTTTGGAAAGATTTA</pcr_primer_p1>
		<pcr_primer_p2>CATGTCTGAAAATGATTGTGTC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AAATTGGATTTTGGAAAGATTTACAGCAGAGAACAATTCATGTCTAGATTCTGAGAACAGGCGCTACAGTAACCCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATG</canonical_amplicon>
		<polymorphic_amplicon>AAATTGGATTTTGGAAAGATTTACAGCAGAGAACAATTCATGTCTAGATTCTGAGAACAGGCGCTACAGTAACCCCCTGAATAAAAGTTTATGTTTTTTYTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31357</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>834820</contig_pos>
        <strand></strand>
        <context>CCTATTTTTG[T/C]TTACAACTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTG</left_flank>
        <right_flank>TTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTC</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACATAACCGACGCCCCCAAAAGATATTTTGTAAACATTCATTTTGTTAAAAAAATAAGTAATAGCTCCTCGAGAACCTCTTTTCCAATTTCCAACTTCAGAATTCTAAAAATTCACTTTCTGGCAAATCTGGGAGCCGCGTCAGAGCTTCAGTAGATTCCTTCACCAGACATATCCACTAAAATCCAGTCTTTCCCTCCACATGTTTCTGCAAGCTTTCTGAAAACAATTTCAGCCGGAAGCCTACTGAAAGGTCGCTCTGAAAAAAGATCGGTCATAAGTCATGCTGTTCTGGAAAACATAAAACCGCAAAAGCAGGTGATGCTGTAAATGTGGAGAACTAATTTGAAAACATTGAAACGGGAAATTGGATTTTGGAAAGATTTACAGCAGAGAACAATTCATGTCTAGATTCTGAGAACAGGCGCTACAGTAACCCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATTCCAAAGATTTCTCGAGCACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGTAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATCCATCATGGTTCCCGTTGAATTTCTTCTATTTCATCCATTTTTCTATGGCCTATGTGCAATTTTTCTTGATATTCTTGACATCTCTAAACAGGTTCACCATGA</canonical>
            <polymorphic>GACATAACCGACGCCCCCAAAAGATATTTTGTAAACATTCATTTTGTTAAAAAAATAAGTAATAGCTCCTCGAGAACCTCTTTTCCAATTTCCAACTTCAGAATTCTAAAAATTCACTTTCTGGCAAATCTGGGAGCCGCGTCAGAGCTTCAGTAGATTCCTTCACCAGACATATCCACTAAAATCCAGTCTTTCCCTCCACATGTTTCTGCAAGCTTTCTGAAAACAATTTCAGCCGGAAGCCTACTGAAAGGTCGCTCTGAAAAAAGATCGGTCATAAGTCATGCTGTTCTGGAAAACATAAAACCGCAAAAGCAGGTGATGCTGTAAATGTGGAGAACTAATTTGAAAACATTGAAACGGGAAATTGGATTTTGGAAAGATTTACAGCAGAGAACAATTCATGTCTAGATTCTGAGAACAGGCGCTACAGTAACCCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGYTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATTCCAAAGATTTCTCGAGCACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGTAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATCCATCATGGTTCCCGTTGAATTTCTTCTATTTCATCCATTTTTCTATGGCCTATGTGCAATTTTTCTTGATATTCTTGACATCTCTAAACAGGTTCACCATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>468 352 139 33 8</canonical_bands>
                <polymorphic_bands>607 352 33 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCCTGAATAAAAGTTTATGTTT</pcr_primer_p1>
		<pcr_primer_p2>AATACTTTCGGACCATTAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATT</canonical_amplicon>
		<polymorphic_amplicon>CCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGYTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31358</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>834838</contig_pos>
        <strand>+</strand>
        <context>TTTTTTCTTG[C/T]ACTTTTTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTG</left_flank>
        <right_flank>ACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAGATATTTTGTAAACATTCATTTTGTTAAAAAAATAAGTAATAGCTCCTCGAGAACCTCTTTTCCAATTTCCAACTTCAGAATTCTAAAAATTCACTTTCTGGCAAATCTGGGAGCCGCGTCAGAGCTTCAGTAGATTCCTTCACCAGACATATCCACTAAAATCCAGTCTTTCCCTCCACATGTTTCTGCAAGCTTTCTGAAAACAATTTCAGCCGGAAGCCTACTGAAAGGTCGCTCTGAAAAAAGATCGGTCATAAGTCATGCTGTTCTGGAAAACATAAAACCGCAAAAGCAGGTGATGCTGTAAATGTGGAGAACTAATTTGAAAACATTGAAACGGGAAATTGGATTTTGGAAAGATTTACAGCAGAGAACAATTCATGTCTAGATTCTGAGAACAGGCGCTACAGTAACCCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATTCCAAAGATTTCTCGAGCACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGTAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATCCATCATGGTTCCCGTTGAATTTCTTCTATTTCATCCATTTTTCTATGGCCTATGTGCAATTTTTCTTGATATTCTTGACATCTCTAAACAGGTTCACCATGATTATTTGGAGCTCTACTT</canonical>
            <polymorphic>AAAAGATATTTTGTAAACATTCATTTTGTTAAAAAAATAAGTAATAGCTCCTCGAGAACCTCTTTTCCAATTTCCAACTTCAGAATTCTAAAAATTCACTTTCTGGCAAATCTGGGAGCCGCGTCAGAGCTTCAGTAGATTCCTTCACCAGACATATCCACTAAAATCCAGTCTTTCCCTCCACATGTTTCTGCAAGCTTTCTGAAAACAATTTCAGCCGGAAGCCTACTGAAAGGTCGCTCTGAAAAAAGATCGGTCATAAGTCATGCTGTTCTGGAAAACATAAAACCGCAAAAGCAGGTGATGCTGTAAATGTGGAGAACTAATTTGAAAACATTGAAACGGGAAATTGGATTTTGGAAAGATTTACAGCAGAGAACAATTCATGTCTAGATTCTGAGAACAGGCGCTACAGTAACCCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGYACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATTCCAAAGATTTCTCGAGCACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGTAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATCCATCATGGTTCCCGTTGAATTTCTTCTATTTCATCCATTTTTCTATGGCCTATGTGCAATTTTTCTTGATATTCTTGACATCTCTAAACAGGTTCACCATGATTATTTGGAGCTCTACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCCTGAATAAAAGTTTATGTTT</pcr_primer_p1>
		<pcr_primer_p2>AATACTTTCGGACCATTAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATT</canonical_amplicon>
		<polymorphic_amplicon>CCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGYACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31359</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>834857</contig_pos>
        <strand>+</strand>
        <context>CTGACATCTT[C/G]AAAACATCCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTT</left_flank>
        <right_flank>AAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACA</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCATTTTGTTAAAAAAATAAGTAATAGCTCCTCGAGAACCTCTTTTCCAATTTCCAACTTCAGAATTCTAAAAATTCACTTTCTGGCAAATCTGGGAGCCGCGTCAGAGCTTCAGTAGATTCCTTCACCAGACATATCCACTAAAATCCAGTCTTTCCCTCCACATGTTTCTGCAAGCTTTCTGAAAACAATTTCAGCCGGAAGCCTACTGAAAGGTCGCTCTGAAAAAAGATCGGTCATAAGTCATGCTGTTCTGGAAAACATAAAACCGCAAAAGCAGGTGATGCTGTAAATGTGGAGAACTAATTTGAAAACATTGAAACGGGAAATTGGATTTTGGAAAGATTTACAGCAGAGAACAATTCATGTCTAGATTCTGAGAACAGGCGCTACAGTAACCCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATTCCAAAGATTTCTCGAGCACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGTAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATCCATCATGGTTCCCGTTGAATTTCTTCTATTTCATCCATTTTTCTATGGCCTATGTGCAATTTTTCTTGATATTCTTGACATCTCTAAACAGGTTCACCATGATTATTTGGAGCTCTACTTATGAGAAGGTGAGTATACT</canonical>
            <polymorphic>TTCATTTTGTTAAAAAAATAAGTAATAGCTCCTCGAGAACCTCTTTTCCAATTTCCAACTTCAGAATTCTAAAAATTCACTTTCTGGCAAATCTGGGAGCCGCGTCAGAGCTTCAGTAGATTCCTTCACCAGACATATCCACTAAAATCCAGTCTTTCCCTCCACATGTTTCTGCAAGCTTTCTGAAAACAATTTCAGCCGGAAGCCTACTGAAAGGTCGCTCTGAAAAAAGATCGGTCATAAGTCATGCTGTTCTGGAAAACATAAAACCGCAAAAGCAGGTGATGCTGTAAATGTGGAGAACTAATTTGAAAACATTGAAACGGGAAATTGGATTTTGGAAAGATTTACAGCAGAGAACAATTCATGTCTAGATTCTGAGAACAGGCGCTACAGTAACCCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTSAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATTCCAAAGATTTCTCGAGCACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGTAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATCCATCATGGTTCCCGTTGAATTTCTTCTATTTCATCCATTTTTCTATGGCCTATGTGCAATTTTTCTTGATATTCTTGACATCTCTAAACAGGTTCACCATGATTATTTGGAGCTCTACTTATGAGAAGGTGAGTATACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCCTGAATAAAAGTTTATGTTT</pcr_primer_p1>
		<pcr_primer_p2>AATACTTTCGGACCATTAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATT</canonical_amplicon>
		<polymorphic_amplicon>CCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTSAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31360</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>835092</contig_pos>
        <strand>+</strand>
        <context>TTATTTCCGG[A/G]AAAAAAATAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGG</left_flank>
        <right_flank>AAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTCATAAGTCATGCTGTTCTGGAAAACATAAAACCGCAAAAGCAGGTGATGCTGTAAATGTGGAGAACTAATTTGAAAACATTGAAACGGGAAATTGGATTTTGGAAAGATTTACAGCAGAGAACAATTCATGTCTAGATTCTGAGAACAGGCGCTACAGTAACCCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATTCCAAAGATTTCTCGAGCACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGTAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATCCATCATGGTTCCCGTTGAATTTCTTCTATTTCATCCATTTTTCTATGGCCTATGTGCAATTTTTCTTGATATTCTTGACATCTCTAAACAGGTTCACCATGATTATTTGGAGCTCTACTTATGAGAAGGTGAGTATACTTTATTTTGTGGGTACTGTATTTTCACAACTTTCTGTTTTAGGCTTGGAACAAAATATTCAAATTCTTGATTGTCTTGGTCTCTCTGTTACCTATCCCATTCACTTACACAATTTTAATAAGTTCCACTTATTATACCTATACAGAAACCTTGGATTGTTACACGGTTTCTAGTACAGCAAGCCGAGAGCACCTTTACAACTTTTTGCTTCCATATTTTGCAATAGTTACAATTAC</canonical>
            <polymorphic>GGTCATAAGTCATGCTGTTCTGGAAAACATAAAACCGCAAAAGCAGGTGATGCTGTAAATGTGGAGAACTAATTTGAAAACATTGAAACGGGAAATTGGATTTTGGAAAGATTTACAGCAGAGAACAATTCATGTCTAGATTCTGAGAACAGGCGCTACAGTAACCCCCTGAATAAAAGTTTATGTTTTTTCTATTACTAATCGTTTCCTCATTAAACCTATTTTTGTTTACAACTTTTTTCTTGTACTTTTTTCTGACATCTTCAAAACATCCGCTCCCTAGTGATATTCTCACAAAAATTCCGTCTAGACACAATCATTTTCAGACATGCTTACTATCAAATTTGGCACGACTCTTCTCTACAGTATACCCTCGATGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATTCCAAAGATTTCTCGAGCACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGRAAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGTAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATCCATCATGGTTCCCGTTGAATTTCTTCTATTTCATCCATTTTTCTATGGCCTATGTGCAATTTTTCTTGATATTCTTGACATCTCTAAACAGGTTCACCATGATTATTTGGAGCTCTACTTATGAGAAGGTGAGTATACTTTATTTTGTGGGTACTGTATTTTCACAACTTTCTGTTTTAGGCTTGGAACAAAATATTCAAATTCTTGATTGTCTTGGTCTCTCTGTTACCTATCCCATTCACTTACACAATTTTAATAAGTTCCACTTATTATACCTATACAGAAACCTTGGATTGTTACACGGTTTCTAGTACAGCAAGCCGAGAGCACCTTTACAACTTTTTGCTTCCATATTTTGCAATAGTTACAATTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCCGGA</site>
                <isoschizomers>
                    <enzyme>AccIII</enzyme>
                    <enzyme>BseAI</enzyme>
                    <enzyme>BsiMI</enzyme>
                    <enzyme>Bsp13I</enzyme>
                    <enzyme>BspEI</enzyme>
                    <enzyme>BspMII</enzyme>
                    <enzyme>Kpn2I</enzyme>
                    <enzyme>MroI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>195 171 170 130 123 116 66 20 9</canonical_bands>
                <polymorphic_bands>261 171 170 130 123 116 20 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGTCCTCTACTTTATGACATTT</pcr_primer_p1>
		<pcr_primer_p2>GATTCTCAACTGTATGCCATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATTCCAAAGATTTCTCGAGCACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGAAAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGTAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATC</canonical_amplicon>
		<polymorphic_amplicon>TGGTCCTCTACTTTATGACATTTCTAATGGTCCGAAAGTATTCCAAAGATTTCTCGAGCACCTTTTTGAAACTCTACAAGATGTTCTTTGTATTTGTAAGTTTCTTATATTCTTATTTCCGGRAAAAAAATATAAAATTTCAGAACAATGTAACATTCTTCAACTCGTTCATCACTGTTCGAATACCCCAGAACACTTGTAAAGACTGCTTGATGTCGTTTCTATTCAAATGGCATACAGTTGAGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31361</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>838268</contig_pos>
        <strand></strand>
        <context>gatttttccg[C/G]accaaaatAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTGTAAGACCTTCGGCCACGGCCACTGGTAGTTCTCTTCCGATTTTTCCG</left_flank>
        <right_flank>ACCAAAATAATAAAACGGAATGCGAAAAAAAACAAAAACTTTTAATTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGATCAAAGATTATCAAAAATTTATTAATTTCGTAAAAAAAAGGCACTCTCACTAACACAGTACCAGTCAATAATATACAAAACTTTACTTTTCAGTAGATTTTGGCCATTTTCAGCAGTCAGAGCTCGGTTGTTTGGAGCTCGGCTGTCAAGTTTTCGATCACTTTGAAAATTTATGAGGGTGTAAAAAAGACCTAGATTGGAAACTTTGCATTCACAGAATTTTTATAAAGCATCGTACTTGGCTCAAATTCCGATTTCAACTATTTCAATGATTCGTTAGTAAACTGGCCAATTTTCAAATTATTTTATCAACTTTAAAGGTGNNNNNNNNNNTTTGCGGATTTGTTATCGTGATTTTCGTGCGTTTTCATTCAATTGTTTCAACCAGTGAAAAACATGAAAAAATACGGAAATTTTAAATATTGTTAGGTTACGGTAGTTGTCGTTGTAAGACCTTCGGCCACGGCCACTGGTAGTTCTCTTCCGATTTTTCCGCACCAAAATAATAAAACGGAATGCGAAAAAAAACAAAAACTTTTAATTTTTCAAAATAGTGAGAAATATTTGAAATTCGAGCACATCAAAAATTACCGTAACCACTCTAATAAAAAGCCACTCTAGCCGTTAACTTTCAGCTTGTATATATCGGCTCTTGTAGAAGATATCAAAAAAGTGTCAACTGATAAATTATTTATCATAACATCACAAACATTTTATCAGTTGACACATTTTTGATATTTTTTACAGGAACCGAGTTATATAGGATCAAAGTAAAAAGTTTGGGACGTTATGTTAAAGTGCTTATGGTATAAAATGTGCCTGTATATCTCGGTCCCCGTCAAAGATAGGAAAATTGGTAAATTGGTAAAAACTGGTAAATTGTTTATGATAATATTACAAACATTTTCTCAGTTGACACATTTTTGATATCCTTCACAAGGACTGAGATATTGAAGCTCAAAGTAGAAAGCCAAGGGTTGGCGTTCTATCAGAGTG</canonical>
            <polymorphic>TTGATCAAAGATTATCAAAAATTTATTAATTTCGTAAAAAAAAGGCACTCTCACTAACACAGTACCAGTCAATAATATACAAAACTTTACTTTTCAGTAGATTTTGGCCATTTTCAGCAGTCAGAGCTCGGTTGTTTGGAGCTCGGCTGTCAAGTTTTCGATCACTTTGAAAATTTATGAGGGTGTAAAAAAGACCTAGATTGGAAACTTTGCATTCACAGAATTTTTATAAAGCATCGTACTTGGCTCAAATTCCGATTTCAACTATTTCAATGATTCGTTAGTAAACTGGCCAATTTTCAAATTATTTTATCAACTTTAAAGGTGNNNNNNNNNNTTTGCGGATTTGTTATCGTGATTTTCGTGCGTTTTCATTCAATTGTTTCAACCAGTGAAAAACATGAAAAAATACGGAAATTTTAAATATTGTTAGGTTACGGTAGTTGTCGTTGTAAGACCTTCGGCCACGGCCACTGGTAGTTCTCTTCCGATTTTTCCGSACCAAAATAATAAAACGGAATGCGAAAAAAAACAAAAACTTTTAATTTTTCAAAATAGTGAGAAATATTTGAAATTCGAGCACATCAAAAATTACCGTAACCACTCTAATAAAAAGCCACTCTAGCCGTTAACTTTCAGCTTGTATATATCGGCTCTTGTAGAAGATATCAAAAAAGTGTCAACTGATAAATTATTTATCATAACATCACAAACATTTTATCAGTTGACACATTTTTGATATTTTTTACAGGAACCGAGTTATATAGGATCAAAGTAAAAAGTTTGGGACGTTATGTTAAAGTGCTTATGGTATAAAATGTGCCTGTATATCTCGGTCCCCGTCAAAGATAGGAAAATTGGTAAATTGGTAAAAACTGGTAAATTGTTTATGATAATATTACAAACATTTTCTCAGTTGACACATTTTTGATATCCTTCACAAGGACTGAGATATTGAAGCTCAAAGTAGAAAGCCAAGGGTTGGCGTTCTATCAGAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>109 105 100 74 73 60 60 59 47 33 30 30 28 28 22 21 21 21 18 18 16 9 6 6 6 0</canonical_bands>
                <polymorphic_bands>109 105 100 87 74 73 60 60 47 33 30 30 28 22 21 21 21 18 18 16 9 6 6 6 0</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGGCACTCTCACTAACA</pcr_primer_p1>
		<pcr_primer_p2>ACCATAAGCACTTTAACATAACG</pcr_primer_p2>
		<pcr_amplicon_size>774</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGGCACTCTCACTAACACAGTACCAGTCAATAATATACAAAACTTTACTTTTCAGTAGATTTTGGCCATTTTCAGCAGTCAGAGCTCGGTTGTTTGGAGCTCGGCTGTCAAGTTTTCGATCACTTTGAAAATTTATGAGGGTGTAAAAAAGACCTAGATTGGAAACTTTGCATTCACAGAATTTTTATAAAGCATCGTACTTGGCTCAAATTCCGATTTCAACTATTTCAATGATTCGTTAGTAAACTGGCCAATTTTCAAATTATTTTATCAACTTTAAAGGTGNNNNNNNNNNTTTGCGGATTTGTTATCGTGATTTTCGTGCGTTTTCATTCAATTGTTTCAACCAGTGAAAAACATGAAAAAATACGGAAATTTTAAATATTGTTAGGTTACGGTAGTTGTCGTTGTAAGACCTTCGGCCACGGCCACTGGTAGTTCTCTTCCGATTTTTCCGCACCAAAATAATAAAACGGAATGCGAAAAAAAACAAAAACTTTTAATTTTTCAAAATAGTGAGAAATATTTGAAATTCGAGCACATCAAAAATTACCGTAACCACTCTAATAAAAAGCCACTCTAGCCGTTAACTTTCAGCTTGTATATATCGGCTCTTGTAGAAGATATCAAAAAAGTGTCAACTGATAAATTATTTATCATAACATCACAAACATTTTATCAGTTGACACATTTTTGATATTTTTTACAGGAACCGAGTTATATAGGATCAAAGTAAAAAGTTTGGGACGTTATGTTAAAGTGCTTATGGT</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGGCACTCTCACTAACACAGTACCAGTCAATAATATACAAAACTTTACTTTTCAGTAGATTTTGGCCATTTTCAGCAGTCAGAGCTCGGTTGTTTGGAGCTCGGCTGTCAAGTTTTCGATCACTTTGAAAATTTATGAGGGTGTAAAAAAGACCTAGATTGGAAACTTTGCATTCACAGAATTTTTATAAAGCATCGTACTTGGCTCAAATTCCGATTTCAACTATTTCAATGATTCGTTAGTAAACTGGCCAATTTTCAAATTATTTTATCAACTTTAAAGGTGNNNNNNNNNNTTTGCGGATTTGTTATCGTGATTTTCGTGCGTTTTCATTCAATTGTTTCAACCAGTGAAAAACATGAAAAAATACGGAAATTTTAAATATTGTTAGGTTACGGTAGTTGTCGTTGTAAGACCTTCGGCCACGGCCACTGGTAGTTCTCTTCCGATTTTTCCGSACCAAAATAATAAAACGGAATGCGAAAAAAAACAAAAACTTTTAATTTTTCAAAATAGTGAGAAATATTTGAAATTCGAGCACATCAAAAATTACCGTAACCACTCTAATAAAAAGCCACTCTAGCCGTTAACTTTCAGCTTGTATATATCGGCTCTTGTAGAAGATATCAAAAAAGTGTCAACTGATAAATTATTTATCATAACATCACAAACATTTTATCAGTTGACACATTTTTGATATTTTTTACAGGAACCGAGTTATATAGGATCAAAGTAAAAAGTTTGGGACGTTATGTTAAAGTGCTTATGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31362</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>838345</contig_pos>
        <strand></strand>
        <context>ATTTGAAATT[C/T]GAGCACATCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAACAAAAACTTTTAATTTTTCAAAATAGTGAGAAATATTTGAAATT</left_flank>
        <right_flank>GAGCACATCAAAAATTACCGTAACCACTCTAATAAAAAGCCACTCTAGCC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACAAAACTTTACTTTTCAGTAGATTTTGGCCATTTTCAGCAGTCAGAGCTCGGTTGTTTGGAGCTCGGCTGTCAAGTTTTCGATCACTTTGAAAATTTATGAGGGTGTAAAAAAGACCTAGATTGGAAACTTTGCATTCACAGAATTTTTATAAAGCATCGTACTTGGCTCAAATTCCGATTTCAACTATTTCAATGATTCGTTAGTAAACTGGCCAATTTTCAAATTATTTTATCAACTTTAAAGGTGNNNNNNNNNNTTTGCGGATTTGTTATCGTGATTTTCGTGCGTTTTCATTCAATTGTTTCAACCAGTGAAAAACATGAAAAAATACGGAAATTTTAAATATTGTTAGGTTACGGTAGTTGTCGTTGTAAGACCTTCGGCCACGGCCACTGGTAGTTCTCTTCCGATTTTTCCGCACCAAAATAATAAAACGGAATGCGAAAAAAAACAAAAACTTTTAATTTTTCAAAATAGTGAGAAATATTTGAAATTCGAGCACATCAAAAATTACCGTAACCACTCTAATAAAAAGCCACTCTAGCCGTTAACTTTCAGCTTGTATATATCGGCTCTTGTAGAAGATATCAAAAAAGTGTCAACTGATAAATTATTTATCATAACATCACAAACATTTTATCAGTTGACACATTTTTGATATTTTTTACAGGAACCGAGTTATATAGGATCAAAGTAAAAAGTTTGGGACGTTATGTTAAAGTGCTTATGGTATAAAATGTGCCTGTATATCTCGGTCCCCGTCAAAGATAGGAAAATTGGTAAATTGGTAAAAACTGGTAAATTGTTTATGATAATATTACAAACATTTTCTCAGTTGACACATTTTTGATATCCTTCACAAGGACTGAGATATTGAAGCTCAAAGTAGAAAGCCAAGGGTTGGCGTTCTATCAGAGTGTTTATGGTATTTTGCAGGGTTACTGTAGAGCAAGTTATTATAATAGCAATTTTTCAGAAAATTAGAAACTTAAGCTT</canonical>
            <polymorphic>TACAAAACTTTACTTTTCAGTAGATTTTGGCCATTTTCAGCAGTCAGAGCTCGGTTGTTTGGAGCTCGGCTGTCAAGTTTTCGATCACTTTGAAAATTTATGAGGGTGTAAAAAAGACCTAGATTGGAAACTTTGCATTCACAGAATTTTTATAAAGCATCGTACTTGGCTCAAATTCCGATTTCAACTATTTCAATGATTCGTTAGTAAACTGGCCAATTTTCAAATTATTTTATCAACTTTAAAGGTGNNNNNNNNNNTTTGCGGATTTGTTATCGTGATTTTCGTGCGTTTTCATTCAATTGTTTCAACCAGTGAAAAACATGAAAAAATACGGAAATTTTAAATATTGTTAGGTTACGGTAGTTGTCGTTGTAAGACCTTCGGCCACGGCCACTGGTAGTTCTCTTCCGATTTTTCCGCACCAAAATAATAAAACGGAATGCGAAAAAAAACAAAAACTTTTAATTTTTCAAAATAGTGAGAAATATTTGAAATTYGAGCACATCAAAAATTACCGTAACCACTCTAATAAAAAGCCACTCTAGCCGTTAACTTTCAGCTTGTATATATCGGCTCTTGTAGAAGATATCAAAAAAGTGTCAACTGATAAATTATTTATCATAACATCACAAACATTTTATCAGTTGACACATTTTTGATATTTTTTACAGGAACCGAGTTATATAGGATCAAAGTAAAAAGTTTGGGACGTTATGTTAAAGTGCTTATGGTATAAAATGTGCCTGTATATCTCGGTCCCCGTCAAAGATAGGAAAATTGGTAAATTGGTAAAAACTGGTAAATTGTTTATGATAATATTACAAACATTTTCTCAGTTGACACATTTTTGATATCCTTCACAAGGACTGAGATATTGAAGCTCAAAGTAGAAAGCCAAGGGTTGGCGTTCTATCAGAGTGTTTATGGTATTTTGCAGGGTTACTGTAGAGCAAGTTATTATAATAGCAATTTTTCAGAAAATTAGAAACTTAAGCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>505 165 157 94 50 29</canonical_bands>
                <polymorphic_bands>662 165 94 50 29</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 418 82</canonical_bands>
                <polymorphic_bands>918 82</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGGCACTCTCACTAACA</pcr_primer_p1>
		<pcr_primer_p2>ACCATAAGCACTTTAACATAACG</pcr_primer_p2>
		<pcr_amplicon_size>774</pcr_amplicon_size>
		<canonical_amplicon>TCGAGCACATCAAAAATTACCGTAACCACTCTAATAAAAAGCCACTCTAGCCGTTAACTTTCAGCTTGTATATATCGGCTCTTGTAGAAGATATCAAAAAAGTGTCAACTGATAAATTATTTATCATAACATCACAAACATTTTATCAGTTGACACATTTTTGATATTTTTTACAGGAACCGAGTTATATAGGATCAAAGTAAAAAGTTTGGGACGTTATGTTAAAGTGCTTATGGT</canonical_amplicon>
		<polymorphic_amplicon>TYGAGCACATCAAAAATTACCGTAACCACTCTAATAAAAAGCCACTCTAGCCGTTAACTTTCAGCTTGTATATATCGGCTCTTGTAGAAGATATCAAAAAAGTGTCAACTGATAAATTATTTATCATAACATCACAAACATTTTATCAGTTGACACATTTTTGATATTTTTTACAGGAACCGAGTTATATAGGATCAAAGTAAAAAGTTTGGGACGTTATGTTAAAGTGCTTATGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31363</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>838668</contig_pos>
        <strand></strand>
        <context>atgataatat[T/C]acaaayattt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAGGAAAATTGGTAAATTGGTAAAAACTGGTAAATTGTTTATGATAATAT</left_flank>
        <right_flank>ACAAACATTTTCTCAGTTGACACATTTTTGATATCCTTCACAAGGACTGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAAAAAATACGGAAATTTTAAATATTGTTAGGTTACGGTAGTTGTCGTTGTAAGACCTTCGGCCACGGCCACTGGTAGTTCTCTTCCGATTTTTCCGCACCAAAATAATAAAACGGAATGCGAAAAAAAACAAAAACTTTTAATTTTTCAAAATAGTGAGAAATATTTGAAATTCGAGCACATCAAAAATTACCGTAACCACTCTAATAAAAAGCCACTCTAGCCGTTAACTTTCAGCTTGTATATATCGGCTCTTGTAGAAGATATCAAAAAAGTGTCAACTGATAAATTATTTATCATAACATCACAAACATTTTATCAGTTGACACATTTTTGATATTTTTTACAGGAACCGAGTTATATAGGATCAAAGTAAAAAGTTTGGGACGTTATGTTAAAGTGCTTATGGTATAAAATGTGCCTGTATATCTCGGTCCCCGTCAAAGATAGGAAAATTGGTAAATTGGTAAAAACTGGTAAATTGTTTATGATAATATTACAAACATTTTCTCAGTTGACACATTTTTGATATCCTTCACAAGGACTGAGATATTGAAGCTCAAAGTAGAAAGCCAAGGGTTGGCGTTCTATCAGAGTGTTTATGGTATTTTGCAGGGTTACTGTAGAGCAAGTTATTATAATAGCAATTTTTCAGAAAATTAGAAACTTAAGCTTTTAAAGAAAACTCTTTGAATCACGGTCAAAAAGTATCCTGGAATTATGGTTTGAAAAAAAAAAGTGGACGAAATAAGAAATTACCGTTAACACTCTAATAGAGCGCCACCCGGACCATCCACTTTGAGCCTATGTCTTTCAAAAGATATTTAAAAAAACGATCAATTAAAAAAACTTTTATCATAATATCAGCTATATTTTATTAGTTAACAACTTTTTGATATCTGTCACAGAAAGTTAGATAAATAGGCTCGCGTTCTATTAGAGTGTTTCCGGTAGATTTCAAGTTTGAAAACATTCGAAACCCAAGCCATGAAAATATA</canonical>
            <polymorphic>ATGAAAAAATACGGAAATTTTAAATATTGTTAGGTTACGGTAGTTGTCGTTGTAAGACCTTCGGCCACGGCCACTGGTAGTTCTCTTCCGATTTTTCCGCACCAAAATAATAAAACGGAATGCGAAAAAAAACAAAAACTTTTAATTTTTCAAAATAGTGAGAAATATTTGAAATTCGAGCACATCAAAAATTACCGTAACCACTCTAATAAAAAGCCACTCTAGCCGTTAACTTTCAGCTTGTATATATCGGCTCTTGTAGAAGATATCAAAAAAGTGTCAACTGATAAATTATTTATCATAACATCACAAACATTTTATCAGTTGACACATTTTTGATATTTTTTACAGGAACCGAGTTATATAGGATCAAAGTAAAAAGTTTGGGACGTTATGTTAAAGTGCTTATGGTATAAAATGTGCCTGTATATCTCGGTCCCCGTCAAAGATAGGAAAATTGGTAAATTGGTAAAAACTGGTAAATTGTTTATGATAATATYACAAACATTTTCTCAGTTGACACATTTTTGATATCCTTCACAAGGACTGAGATATTGAAGCTCAAAGTAGAAAGCCAAGGGTTGGCGTTCTATCAGAGTGTTTATGGTATTTTGCAGGGTTACTGTAGAGCAAGTTATTATAATAGCAATTTTTCAGAAAATTAGAAACTTAAGCTTTTAAAGAAAACTCTTTGAATCACGGTCAAAAAGTATCCTGGAATTATGGTTTGAAAAAAAAAAGTGGACGAAATAAGAAATTACCGTTAACACTCTAATAGAGCGCCACCCGGACCATCCACTTTGAGCCTATGTCTTTCAAAAGATATTTAAAAAAACGATCAATTAAAAAAACTTTTATCATAATATCAGCTATATTTTATTAGTTAACAACTTTTTGATATCTGTCACAGAAAGTTAGATAAATAGGCTCGCGTTCTATTAGAGTGTTTCCGGTAGATTTCAAGTTTGAAAACATTCGAAACCCAAGCCATGAAAATATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 331 141 25</canonical_bands>
                <polymorphic_bands>834 141 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGTTATGTTAAAGTGCTTATGG</pcr_primer_p1>
		<pcr_primer_p2>CTCTACAGTAACCCTGCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ACGTTATGTTAAAGTGCTTATGGTATAAAATGTGCCTGTATATCTCGGTCCCCGTCAAAGATAGGAAAATTGGTAAATTGGTAAAAACTGGTAAATTGTTTATGATAATATTACAAACATTTTCTCAGTTGACACATTTTTGATATCCTTCACAAGGACTGAGATATTGAAGCTCAAAGTAGAAAGCCAAGGGTTGGCGTTCTATCAGAGTGTTTATGGTATTTTGCAGGGTTACTGTAGAG</canonical_amplicon>
		<polymorphic_amplicon>ACGTTATGTTAAAGTGCTTATGGTATAAAATGTGCCTGTATATCTCGGTCCCCGTCAAAGATAGGAAAATTGGTAAATTGGTAAAAACTGGTAAATTGTTTATGATAATATYACAAACATTTTCTCAGTTGACACATTTTTGATATCCTTCACAAGGACTGAGATATTGAAGCTCAAAGTAGAAAGCCAAGGGTTGGCGTTCTATCAGAGTGTTTATGGTATTTTGCAGGGTTACTGTAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31364</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>838674</contig_pos>
        <strand></strand>
        <context>atatyacaaa[C/T]attttctcag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTGGTAAATTGGTAAAAACTGGTAAATTGTTTATGATAATATTACAAA</left_flank>
        <right_flank>ATTTTCTCAGTTGACACATTTTTGATATCCTTCACAAGGACTGAGATATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATACGGAAATTTTAAATATTGTTAGGTTACGGTAGTTGTCGTTGTAAGACCTTCGGCCACGGCCACTGGTAGTTCTCTTCCGATTTTTCCGCACCAAAATAATAAAACGGAATGCGAAAAAAAACAAAAACTTTTAATTTTTCAAAATAGTGAGAAATATTTGAAATTCGAGCACATCAAAAATTACCGTAACCACTCTAATAAAAAGCCACTCTAGCCGTTAACTTTCAGCTTGTATATATCGGCTCTTGTAGAAGATATCAAAAAAGTGTCAACTGATAAATTATTTATCATAACATCACAAACATTTTATCAGTTGACACATTTTTGATATTTTTTACAGGAACCGAGTTATATAGGATCAAAGTAAAAAGTTTGGGACGTTATGTTAAAGTGCTTATGGTATAAAATGTGCCTGTATATCTCGGTCCCCGTCAAAGATAGGAAAATTGGTAAATTGGTAAAAACTGGTAAATTGTTTATGATAATATTACAAACATTTTCTCAGTTGACACATTTTTGATATCCTTCACAAGGACTGAGATATTGAAGCTCAAAGTAGAAAGCCAAGGGTTGGCGTTCTATCAGAGTGTTTATGGTATTTTGCAGGGTTACTGTAGAGCAAGTTATTATAATAGCAATTTTTCAGAAAATTAGAAACTTAAGCTTTTAAAGAAAACTCTTTGAATCACGGTCAAAAAGTATCCTGGAATTATGGTTTGAAAAAAAAAAGTGGACGAAATAAGAAATTACCGTTAACACTCTAATAGAGCGCCACCCGGACCATCCACTTTGAGCCTATGTCTTTCAAAAGATATTTAAAAAAACGATCAATTAAAAAAACTTTTATCATAATATCAGCTATATTTTATTAGTTAACAACTTTTTGATATCTGTCACAGAAAGTTAGATAAATAGGCTCGCGTTCTATTAGAGTGTTTCCGGTAGATTTCAAGTTTGAAAACATTCGAAACCCAAGCCATGAAAATATACTAAAA</canonical>
            <polymorphic>AAATACGGAAATTTTAAATATTGTTAGGTTACGGTAGTTGTCGTTGTAAGACCTTCGGCCACGGCCACTGGTAGTTCTCTTCCGATTTTTCCGCACCAAAATAATAAAACGGAATGCGAAAAAAAACAAAAACTTTTAATTTTTCAAAATAGTGAGAAATATTTGAAATTCGAGCACATCAAAAATTACCGTAACCACTCTAATAAAAAGCCACTCTAGCCGTTAACTTTCAGCTTGTATATATCGGCTCTTGTAGAAGATATCAAAAAAGTGTCAACTGATAAATTATTTATCATAACATCACAAACATTTTATCAGTTGACACATTTTTGATATTTTTTACAGGAACCGAGTTATATAGGATCAAAGTAAAAAGTTTGGGACGTTATGTTAAAGTGCTTATGGTATAAAATGTGCCTGTATATCTCGGTCCCCGTCAAAGATAGGAAAATTGGTAAATTGGTAAAAACTGGTAAATTGTTTATGATAATATTACAAAYATTTTCTCAGTTGACACATTTTTGATATCCTTCACAAGGACTGAGATATTGAAGCTCAAAGTAGAAAGCCAAGGGTTGGCGTTCTATCAGAGTGTTTATGGTATTTTGCAGGGTTACTGTAGAGCAAGTTATTATAATAGCAATTTTTCAGAAAATTAGAAACTTAAGCTTTTAAAGAAAACTCTTTGAATCACGGTCAAAAAGTATCCTGGAATTATGGTTTGAAAAAAAAAAGTGGACGAAATAAGAAATTACCGTTAACACTCTAATAGAGCGCCACCCGGACCATCCACTTTGAGCCTATGTCTTTCAAAAGATATTTAAAAAAACGATCAATTAAAAAAACTTTTATCATAATATCAGCTATATTTTATTAGTTAACAACTTTTTGATATCTGTCACAGAAAGTTAGATAAATAGGCTCGCGTTCTATTAGAGTGTTTCCGGTAGATTTCAAGTTTGAAAACATTCGAAACCCAAGCCATGAAAATATACTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGTTATGTTAAAGTGCTTATGG</pcr_primer_p1>
		<pcr_primer_p2>CTCTACAGTAACCCTGCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ACGTTATGTTAAAGTGCTTATGGTATAAAATGTGCCTGTATATCTCGGTCCCCGTCAAAGATAGGAAAATTGGTAAATTGGTAAAAACTGGTAAATTGTTTATGATAATATTACAAACATTTTCTCAGTTGACACATTTTTGATATCCTTCACAAGGACTGAGATATTGAAGCTCAAAGTAGAAAGCCAAGGGTTGGCGTTCTATCAGAGTGTTTATGGTATTTTGCAGGGTTACTGTAGAG</canonical_amplicon>
		<polymorphic_amplicon>ACGTTATGTTAAAGTGCTTATGGTATAAAATGTGCCTGTATATCTCGGTCCCCGTCAAAGATAGGAAAATTGGTAAATTGGTAAAAACTGGTAAATTGTTTATGATAATATTACAAAYATTTTCTCAGTTGACACATTTTTGATATCCTTCACAAGGACTGAGATATTGAAGCTCAAAGTAGAAAGCCAAGGGTTGGCGTTCTATCAGAGTGTTTATGGTATTTTGCAGGGTTACTGTAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31365</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>840861</contig_pos>
        <strand>+</strand>
        <context>CACSCAGCMA[A/G]RTCTCCATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCA</left_flank>
        <right_flank>ATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACGTTTTGATACAGCTAACAGTAACCGAGATACAGTACCGTTCAATACAA</canonical>
            <polymorphic>TATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCARATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACGTTTTGATACAGCTAACAGTAACCGAGATACAGTACCGTTCAATACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATACTCACGAAACAATCTCAA</pcr_primer_p1>
		<pcr_primer_p2>ATGTGCAAGGGTGAGTAATG</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>AAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACAT</canonical_amplicon>
		<polymorphic_amplicon>AAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCARATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31366</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>840862</contig_pos>
        <strand>+</strand>
        <context>ACSCAGCMAR[A/G]TCTCCATTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAA</left_flank>
        <right_flank>TCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACGTTTTGATACAGCTAACAGTAACCGAGATACAGTACCGTTCAATACAAA</canonical>
            <polymorphic>ATCCGTTGACCGCTTTTTGATAACTGTTACTGGAACCGAGATATATGGGATCAAGAATAATGTTTACCTTAAATCCGGCTTTCTCGAGAACCATCTGATTAGCAATCGAAGTGGTTTCGGATAGCACACCTCCTATGTCGTATTTCTTCAAAAAATTAAATTTAAGTCAAAATCACTGGAACGACCGACTCACCCTCAAGTTAGTTTTCGTCAAATTTGTATACGTCATCTTAGTTGCGATTCCGCCACGGGTGAACTTGGGAGCCACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAARTCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACGTTTTGATACAGCTAACAGTAACCGAGATACAGTACCGTTCAATACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATACTCACGAAACAATCTCAA</pcr_primer_p1>
		<pcr_primer_p2>ATGTGCAAGGGTGAGTAATG</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>AAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACAT</canonical_amplicon>
		<polymorphic_amplicon>AAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAARTCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31367</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>841127</contig_pos>
        <strand>+</strand>
        <context>AAACTCTTGA[C/T]AACAWCATCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGA</left_flank>
        <right_flank>AACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACGTTTTGATACAGCTAACAGTAACCGAGATACAGTACCGTTCAATACAAAAACGTAATTTTCAAGATTTTAGGTCACTTTCACAATCAGAAGTCTGGAGCTCGGCTGTCAAGTTTCCGATCACTTTGAAAATTTTAGAGGATATGAAACAGACTTAGATCAGACACTTTGCATTAGCAAAATTTTTAGAAAATTCCTTTTTCTCCGATTCTAAAAAACATCCCCTTTTGTCCCGTTTTTGCACTGAAAACGAGAAAGAAATCTGTCTTTCAGAAACCGGCAAGTAGCTAGAAAACTTCTGCCACTGCGAAGTTTT</canonical>
            <polymorphic>CACACTTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGAYAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACGTTTTGATACAGCTAACAGTAACCGAGATACAGTACCGTTCAATACAAAAACGTAATTTTCAAGATTTTAGGTCACTTTCACAATCAGAAGTCTGGAGCTCGGCTGTCAAGTTTCCGATCACTTTGAAAATTTTAGAGGATATGAAACAGACTTAGATCAGACACTTTGCATTAGCAAAATTTTTAGAAAATTCCTTTTTCTCCGATTCTAAAAAACATCCCCTTTTGTCCCGTTTTTGCACTGAAAACGAGAAAGAAATCTGTCTTTCAGAAACCGGCAAGTAGCTAGAAAACTTCTGCCACTGCGAAGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATCCTTATCTTTGGGTTGTG</pcr_primer_p1>
		<pcr_primer_p2>TCACTTTAGACTTGCACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>701</pcr_amplicon_size>
		<canonical_amplicon>TTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATC</canonical_amplicon>
		<polymorphic_amplicon>TTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGAYAACAACATCGTAAAATAGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31368</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>841132</contig_pos>
        <strand>+</strand>
        <context>CTTGAYAACA[A/T]CATCGTAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACA</left_flank>
        <right_flank>CATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACGTTTTGATACAGCTAACAGTAACCGAGATACAGTACCGTTCAATACAAAAACGTAATTTTCAAGATTTTAGGTCACTTTCACAATCAGAAGTCTGGAGCTCGGCTGTCAAGTTTCCGATCACTTTGAAAATTTTAGAGGATATGAAACAGACTTAGATCAGACACTTTGCATTAGCAAAATTTTTAGAAAATTCCTTTTTCTCCGATTCTAAAAAACATCCCCTTTTGTCCCGTTTTTGCACTGAAAACGAGAAAGAAATCTGTCTTTCAGAAACCGGCAAGTAGCTAGAAAACTTCTGCCACTGCGAAGTTTTCAATC</canonical>
            <polymorphic>TTCCAAGCTCCCTATGAATCACAGCATTCACTCCAGGTGGAGCGATTTTCCAGAAGTTTGAGTGAGCCGTATTCAAAAATTCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAWCATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACGTTTTGATACAGCTAACAGTAACCGAGATACAGTACCGTTCAATACAAAAACGTAATTTTCAAGATTTTAGGTCACTTTCACAATCAGAAGTCTGGAGCTCGGCTGTCAAGTTTCCGATCACTTTGAAAATTTTAGAGGATATGAAACAGACTTAGATCAGACACTTTGCATTAGCAAAATTTTTAGAAAATTCCTTTTTCTCCGATTCTAAAAAACATCCCCTTTTGTCCCGTTTTTGCACTGAAAACGAGAAAGAAATCTGTCTTTCAGAAACCGGCAAGTAGCTAGAAAACTTCTGCCACTGCGAAGTTTTCAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATCCTTATCTTTGGGTTGTG</pcr_primer_p1>
		<pcr_primer_p2>TCACTTTAGACTTGCACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>701</pcr_amplicon_size>
		<canonical_amplicon>TTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATA</canonical_amplicon>
		<polymorphic_amplicon>TTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAWCATCGTAAAATAGATCGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31369</snp_id>
        <super_contig>c006000790.Contig3</super_contig>
        <contig_pos>841212</contig_pos>
        <strand></strand>
        <context>gaaagccact[T/C]gtactttgag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACT</left_flank>
        <right_flank>GTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACGTTTTGATACAGCTAACAGTAACCGAGATACAGTACCGTTCAATACAAAAACGTAATTTTCAAGATTTTAGGTCACTTTCACAATCAGAAGTCTGGAGCTCGGCTGTCAAGTTTCCGATCACTTTGAAAATTTTAGAGGATATGAAACAGACTTAGATCAGACACTTTGCATTAGCAAAATTTTTAGAAAATTCCTTTTTCTCCGATTCTAAAAAACATCCCCTTTTGTCCCGTTTTTGCACTGAAAACGAGAAAGAAATCTGTCTTTCAGAAACCGGCAAGTAGCTAGAAAACTTCTGCCACTGCGAAGTTTTCAATCTAGATCTGTTTCACACCATTCAAAATTTTCAAAATGATCGGAAACTTCACAGCCGAGCTTCAGACTCCTGAAAATGCCAA</canonical>
            <polymorphic>TCGACTGAAATATTAGAAGATTGGTCTACAGGAATTACAAAATACTCACGAAACAATCTCAATTTTTCCGGAACACCTGAATCGTCAAAATCCGCATTTCCAATTGGATCAGTGCGATTCCAAACCGACGCTACTAGACACCCAGCCAAATCTCCATTCTCTTGGAGGACTACTGTAGAGAAGGGGTATTTTAGGCAGCGGGTTACTGTAGTTGTGAATGTGTTGTGCGTGATTTCGGGGGAGAGTTTCATGGCCTGAAATTAGAAAAAAGTCGGGGTTTGTGGATTCGCCATTACTCACCCTTGCACATGGTTCCTCCTTGGCGAAATGATTATCCAGAAACTTGATAATATTATCCTTATCTTTGGGTTGTGCGGCTCGGAATAGGAGTTGTTGTCTTCGCAAAACTCTTGATAACAACATCGTAAAATAGATCGAATACTGGAACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTYGTACTTTGAGCTCATATAACTGTTCCTGTAACAGATATCAAAACGTCGTTAACTGATAAAATGTTCATGATATTATGATACATATTTTGTTTGTTGACTACGTTTTGATACAGCTAACAGTAACCGAGATACAGTACCGTTCAATACAAAAACGTAATTTTCAAGATTTTAGGTCACTTTCACAATCAGAAGTCTGGAGCTCGGCTGTCAAGTTTCCGATCACTTTGAAAATTTTAGAGGATATGAAACAGACTTAGATCAGACACTTTGCATTAGCAAAATTTTTAGAAAATTCCTTTTTCTCCGATTCTAAAAAACATCCCCTTTTGTCCCGTTTTTGCACTGAAAACGAGAAAGAAATCTGTCTTTCAGAAACCGGCAAGTAGCTAGAAAACTTCTGCCACTGCGAAGTTTTCAATCTAGATCTGTTTCACACCATTCAAAATTTTCAAAATGATCGGAAACTTCACAGCCGAGCTTCAGACTCCTGAAAATGCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGAAAACTTCAGATTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TCACTTTAGACTTGCACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>607</pcr_amplicon_size>
		<canonical_amplicon>ACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTTGTACTTTGAGCTCATATAACT</canonical_amplicon>
		<polymorphic_amplicon>ACGAAAACTTCAGATTCAAAAAAATACCATAAACACTCTAATAGAAAGCCACTYGTACTTTGAGCTCATATAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31371</snp_id>
        <super_contig>c006000967.Contig1</super_contig>
        <contig_pos>42721</contig_pos>
        <strand>+</strand>
        <context>TTGTGGGTCA[C/G]ACCAAAAATA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATATTTTCCATTCTCAATATTTTGATAAACGGTTTGCTCATTGTGGGTCA</left_flank>
        <right_flank>ACCAAAAATATTACCACCAAAAACTTTTAGGCAGTTTAAAACTAGTATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAATTAAATAAATAACTGCCACAACGTATTGGTGCACAAAAAACACTCTCGCAGCCGCAACGTGCGAGTTTTGCAATCCCGCGGCGCGCATTTCTGTTTTCTCGTAATTTGATGTATCTATGCAATTGTTCTTAGAAAAGAAATGAATATTTCAAACTACAAATTTAAGAATTTATGAACTCGAAATAATTTTTTAAAAAATGCTCAAAAGTTTAAAAAATTTTCTAACAATTCACTTTTATCGAGAAGGAAAATTCAAGAATATACAGATATAGATGGAACTGGAAAAAAAACTCTCTCTCTCTATACCTTCTCTCTACTTTCTCTGTCATTCCACATACGTTTCCGTAAAAAATATCACGACCAAAGCGGGTTCTCCACCAAGCTGGCGCGGCTACGGCGGTTCAGTGACCCCGTTTTCACTTTTCTGGCATAAATTGAAAAAATATATTTTCCATTCTCAATATTTTGATAAACGGTTTGCTCATTGTGGGTCAGACCAAAAATATTACCACCAAAAACTTTTAGGCAGTTTAAAACTAGTATTTTTTTGTTGACAATGTGCGGAAAAGAAGAGGAAAAAATTACAAAAAAGATAGCGAATTCAATGGGTTTAGCAGGCTTCAAACACAATTTGAAATGTTGATATGCTTTTCTAGAACAAAACTAATTTTCCAATGTTGAATAGTGTAAAAGAGAGCGAAGCAGGTTCGCGCCAGATTGAAAATTTACCGACTACTTTGGTTATCTTTCCTCAATTTTGAAAAAACAATGTTTCAAAGATTTATCGATTTTTGAATTTTTCAGATATGGATGAAGTTCGACGTGTCGTGAGCCTTACTCCGCTTATTATCAGCTTTTTGGGATCGATGACATGTTTTTATGCAACCTGTGAGTTTTTCTGATTTTTTTCCAGTCGGTCGTGAATTTGGGGACTTTGTACAAAACATGATTTCACAAACAAAAAATGGTATTGGATCTTCAGAAATCCAAGAATC</canonical>
            <polymorphic>TCAAATTAAATAAATAACTGCCACAACGTATTGGTGCACAAAAAACACTCTCGCAGCCGCAACGTGCGAGTTTTGCAATCCCGCGGCGCGCATTTCTGTTTTCTCGTAATTTGATGTATCTATGCAATTGTTCTTAGAAAAGAAATGAATATTTCAAACTACAAATTTAAGAATTTATGAACTCGAAATAATTTTTTAAAAAATGCTCAAAAGTTTAAAAAATTTTCTAACAATTCACTTTTATCGAGAAGGAAAATTCAAGAATATACAGATATAGATGGAACTGGAAAAAAAACTCTCTCTCTCTATACCTTCTCTCTACTTTCTCTGTCATTCCACATACGTTTCCGTAAAAAATATCACGACCAAAGCGGGTTCTCCACCAAGCTGGCGCGGCTACGGCGGTTCAGTGACCCCGTTTTCACTTTTCTGGCATAAATTGAAAAAATATATTTTCCATTCTCAATATTTTGATAAACGGTTTGCTCATTGTGGGTCASACCAAAAATATTACCACCAAAAACTTTTAGGCAGTTTAAAACTAGTATTTTTTTGTTGACAATGTGCGGAAAAGAAGAGGAAAAAATTACAAAAAAGATAGCGAATTCAATGGGTTTAGCAGGCTTCAAACACAATTTGAAATGTTGATATGCTTTTCTAGAACAAAACTAATTTTCCAATGTTGAATAGTGTAAAAGAGAGCGAAGCAGGTTCGCGCCAGATTGAAAATTTACCGACTACTTTGGTTATCTTTCCTCAATTTTGAAAAAACAATGTTTCAAAGATTTATCGATTTTTGAATTTTTCAGATATGGATGAAGTTCGACGTGTCGTGAGCCTTACTCCGCTTATTATCAGCTTTTTGGGATCGATGACATGTTTTTATGCAACCTGTGAGTTTTTCTGATTTTTTTCCAGTCGGTCGTGAATTTGGGGACTTTGTACAAAACATGATTTCACAAACAAAAAATGGTATTGGATCTTCAGAAATCCAAGAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>499 309 97 81 14</canonical_bands>
                <polymorphic_bands>808 97 81 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTTTCTGGCATAAATTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TGTTCTAGAAAAGCATATCAACAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ACTTTTCTGGCATAAATTGAAAAAATATATTTTCCATTCTCAATATTTTGATAAACGGTTTGCTCATTGTGGGTCAGACCAAAAATATTACCACCAAAAACTTTTAGGCAGTTTAAAACTAGTATTTTTTTGTTGACAATGTGCGGAAAAGAAGAGGAAAAAATTACAAAAAAGATAGCGAATTCAATGGGTTTAGCAGGCTTCAAACACAATTTGAAATGTTGATATGCTTTTCTAGAACA</canonical_amplicon>
		<polymorphic_amplicon>ACTTTTCTGGCATAAATTGAAAAAATATATTTTCCATTCTCAATATTTTGATAAACGGTTTGCTCATTGTGGGTCASACCAAAAATATTACCACCAAAAACTTTTAGGCAGTTTAAAACTAGTATTTTTTTGTTGACAATGTGCGGAAAAGAAGAGGAAAAAATTACAAAAAAGATAGCGAATTCAATGGGTTTAGCAGGCTTCAAACACAATTTGAAATGTTGATATGCTTTTCTAGAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31372</snp_id>
        <super_contig>c006001012.Contig1</super_contig>
        <contig_pos>33306</contig_pos>
        <strand>+</strand>
        <context>GGAGAAGTCA[A/G]AARTGGCAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACAAGACCAATTTGGATTGATCAGAAAAGGAACCAGGTTGGAGAAGTCA</left_flank>
        <right_flank>AACTGGCAGAAGACGCAAAGTATCCAATTATTCTGGTACGCGACCACAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTGAAGCTACCGACAAAAGACTGGCCACAAAGATGGACTGAGTCTACTAAAATTCCAAAATGGCTGGAAAAAGCAATGGCGGAAGAGATTGCAGGGAAAGAAGGAAAATTAGTATATGAAGAAACAGATGGAGTAGAAGAGTATGTGGTACAGTTGACCACTGCACCAGCTGAGGATCTTAAAGAGTATATCTCTATTGTTCCGTATGAATCTACAAACTAGATTAACTAGGATAATGGGAACGGTCATGAAAGCTGTACAAAGATTTGCAGCCAAGACAGGAAAGAAATTCCAAGGCAGAACAATGACAACGTATTGTGACGCTAAACCAGGAATCGAAGGATATGAGAAGAGGAGGAAAACAGTTTTATACTACATGATTGCCGATCATTATAAAGAGACGGCAGCCAGATCAGAATACCGTGTTCCAGCAGATTTGAACCCGAAACAAGACCAATTTGGATTGATCAGAAAAGGAACCAGGTTGGAGAAGTCAGAACTGGCAGAAGACGCAAAGTATCCAATTATTCTGGTACGCGACCACAAGTTGACAGAGATGATCGTGCGGCAAACCCATGTGTATAACAGACACATTGGAACGGAACATTTGTTGGCAGAATGCAGAAGGCAATATTGGATTCCTCAAGGAAGACAGCTAGCCAGAAAGATTGTACATTCTTGTGTCACTTGCAGAAAACTGAGAGGTAGACCATTCAAATACCCCGACATCCCACCACTACCATCGACCAGAGTAAGAAGGTCAGGACCATTCCAAAACGTGGGACTCGATGGGTTCGGTCCACTAATGTATAAGGGCTTGACTGGAGAAAGGAAATGTTGGGTACTAATTTGCACATGTTTGATAACAAGGAACGTACATTTGGAACTTATCTCCGACAATGGAACTAGCGAATTTATATTAGCCATGAGACGATATTTTGCCAGAAGAGGGACCCCTAGAACAGTGGTGTTGGATAATGCCAAGAGTTTTGTTCTA</canonical>
            <polymorphic>TTTCTGAAGCTACCGACAAAAGACTGGCCACAAAGATGGACTGAGTCTACTAAAATTCCAAAATGGCTGGAAAAAGCAATGGCGGAAGAGATTGCAGGGAAAGAAGGAAAATTAGTATATGAAGAAACAGATGGAGTAGAAGAGTATGTGGTACAGTTGACCACTGCACCAGCTGAGGATCTTAAAGAGTATATCTCTATTGTTCCGTATGAATCTACAAACTAGATTAACTAGGATAATGGGAACGGTCATGAAAGCTGTACAAAGATTTGCAGCCAAGACAGGAAAGAAATTCCAAGGCAGAACAATGACAACGTATTGTGACGCTAAACCAGGAATCGAAGGATATGAGAAGAGGAGGAAAACAGTTTTATACTACATGATTGCCGATCATTATAAAGAGACGGCAGCCAGATCAGAATACCGTGTTCCAGCAGATTTGAACCCGAAACAAGACCAATTTGGATTGATCAGAAAAGGAACCAGGTTGGAGAAGTCARAACTGGCAGAAGACGCAAAGTATCCAATTATTCTGGTACGCGACCACAAGTTGACAGAGATGATCGTGCGGCAAACCCATGTGTATAACAGACACATTGGAACGGAACATTTGTTGGCAGAATGCAGAAGGCAATATTGGATTCCTCAAGGAAGACAGCTAGCCAGAAAGATTGTACATTCTTGTGTCACTTGCAGAAAACTGAGAGGTAGACCATTCAAATACCCCGACATCCCACCACTACCATCGACCAGAGTAAGAAGGTCAGGACCATTCCAAAACGTGGGACTCGATGGGTTCGGTCCACTAATGTATAAGGGCTTGACTGGAGAAAGGAAATGTTGGGTACTAATTTGCACATGTTTGATAACAAGGAACGTACATTTGGAACTTATCTCCGACAATGGAACTAGCGAATTTATATTAGCCATGAGACGATATTTTGCCAGAAGAGGGACCCCTAGAACAGTGGTGTTGGATAATGCCAAGAGTTTTGTTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>413 399 102 55 26 5</canonical_bands>
                <polymorphic_bands>425 413 102 55 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACGTATTGTGACGCTAAAC</pcr_primer_p1>
		<pcr_primer_p2>CATCTCTGTCAACTTGTGGTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAACGTATTGTGACGCTAAACCAGGAATCGAAGGATATGAGAAGAGGAGGAAAACAGTTTTATACTACATGATTGCCGATCATTATAAAGAGACGGCAGCCAGATCAGAATACCGTGTTCCAGCAGATTTGAACCCGAAACAAGACCAATTTGGATTGATCAGAAAAGGAACCAGGTTGGAGAAGTCAGAACTGGCAGAAGACGCAAAGTATCCAATTATTCTGGTACGCGACCACAAGTTGACAGAGATG</canonical_amplicon>
		<polymorphic_amplicon>CAACGTATTGTGACGCTAAACCAGGAATCGAAGGATATGAGAAGAGGAGGAAAACAGTTTTATACTACATGATTGCCGATCATTATAAAGAGACGGCAGCCAGATCAGAATACCGTGTTCCAGCAGATTTGAACCCGAAACAAGACCAATTTGGATTGATCAGAAAAGGAACCAGGTTGGAGAAGTCARAACTGGCAGAAGACGCAAAGTATCCAATTATTCTGGTACGCGACCACAAGTTGACAGAGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31373</snp_id>
        <super_contig>c006001012.Contig1</super_contig>
        <contig_pos>33309</contig_pos>
        <strand>+</strand>
        <context>GAAGTCARAA[A/G]TGGCAGAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGACCAATTTGGATTGATCAGAAAAGGAACCAGGTTGGAGAAGTCAGAA</left_flank>
        <right_flank>TGGCAGAAGACGCAAAGTATCCAATTATTCTGGTACGCGACCACAAGTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAAGCTACCGACAAAAGACTGGCCACAAAGATGGACTGAGTCTACTAAAATTCCAAAATGGCTGGAAAAAGCAATGGCGGAAGAGATTGCAGGGAAAGAAGGAAAATTAGTATATGAAGAAACAGATGGAGTAGAAGAGTATGTGGTACAGTTGACCACTGCACCAGCTGAGGATCTTAAAGAGTATATCTCTATTGTTCCGTATGAATCTACAAACTAGATTAACTAGGATAATGGGAACGGTCATGAAAGCTGTACAAAGATTTGCAGCCAAGACAGGAAAGAAATTCCAAGGCAGAACAATGACAACGTATTGTGACGCTAAACCAGGAATCGAAGGATATGAGAAGAGGAGGAAAACAGTTTTATACTACATGATTGCCGATCATTATAAAGAGACGGCAGCCAGATCAGAATACCGTGTTCCAGCAGATTTGAACCCGAAACAAGACCAATTTGGATTGATCAGAAAAGGAACCAGGTTGGAGAAGTCAGAACTGGCAGAAGACGCAAAGTATCCAATTATTCTGGTACGCGACCACAAGTTGACAGAGATGATCGTGCGGCAAACCCATGTGTATAACAGACACATTGGAACGGAACATTTGTTGGCAGAATGCAGAAGGCAATATTGGATTCCTCAAGGAAGACAGCTAGCCAGAAAGATTGTACATTCTTGTGTCACTTGCAGAAAACTGAGAGGTAGACCATTCAAATACCCCGACATCCCACCACTACCATCGACCAGAGTAAGAAGGTCAGGACCATTCCAAAACGTGGGACTCGATGGGTTCGGTCCACTAATGTATAAGGGCTTGACTGGAGAAAGGAAATGTTGGGTACTAATTTGCACATGTTTGATAACAAGGAACGTACATTTGGAACTTATCTCCGACAATGGAACTAGCGAATTTATATTAGCCATGAGACGATATTTTGCCAGAAGAGGGACCCCTAGAACAGTGGTGTTGGATAATGCCAAGAGTTTTGTTCTAGGA</canonical>
            <polymorphic>CTGAAGCTACCGACAAAAGACTGGCCACAAAGATGGACTGAGTCTACTAAAATTCCAAAATGGCTGGAAAAAGCAATGGCGGAAGAGATTGCAGGGAAAGAAGGAAAATTAGTATATGAAGAAACAGATGGAGTAGAAGAGTATGTGGTACAGTTGACCACTGCACCAGCTGAGGATCTTAAAGAGTATATCTCTATTGTTCCGTATGAATCTACAAACTAGATTAACTAGGATAATGGGAACGGTCATGAAAGCTGTACAAAGATTTGCAGCCAAGACAGGAAAGAAATTCCAAGGCAGAACAATGACAACGTATTGTGACGCTAAACCAGGAATCGAAGGATATGAGAAGAGGAGGAAAACAGTTTTATACTACATGATTGCCGATCATTATAAAGAGACGGCAGCCAGATCAGAATACCGTGTTCCAGCAGATTTGAACCCGAAACAAGACCAATTTGGATTGATCAGAAAAGGAACCAGGTTGGAGAAGTCAGAARTGGCAGAAGACGCAAAGTATCCAATTATTCTGGTACGCGACCACAAGTTGACAGAGATGATCGTGCGGCAAACCCATGTGTATAACAGACACATTGGAACGGAACATTTGTTGGCAGAATGCAGAAGGCAATATTGGATTCCTCAAGGAAGACAGCTAGCCAGAAAGATTGTACATTCTTGTGTCACTTGCAGAAAACTGAGAGGTAGACCATTCAAATACCCCGACATCCCACCACTACCATCGACCAGAGTAAGAAGGTCAGGACCATTCCAAAACGTGGGACTCGATGGGTTCGGTCCACTAATGTATAAGGGCTTGACTGGAGAAAGGAAATGTTGGGTACTAATTTGCACATGTTTGATAACAAGGAACGTACATTTGGAACTTATCTCCGACAATGGAACTAGCGAATTTATATTAGCCATGAGACGATATTTTGCCAGAAGAGGGACCCCTAGAACAGTGGTGTTGGATAATGCCAAGAGTTTTGTTCTAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACGTATTGTGACGCTAAAC</pcr_primer_p1>
		<pcr_primer_p2>CATCTCTGTCAACTTGTGGTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAACGTATTGTGACGCTAAACCAGGAATCGAAGGATATGAGAAGAGGAGGAAAACAGTTTTATACTACATGATTGCCGATCATTATAAAGAGACGGCAGCCAGATCAGAATACCGTGTTCCAGCAGATTTGAACCCGAAACAAGACCAATTTGGATTGATCAGAAAAGGAACCAGGTTGGAGAAGTCAGAACTGGCAGAAGACGCAAAGTATCCAATTATTCTGGTACGCGACCACAAGTTGACAGAGATG</canonical_amplicon>
		<polymorphic_amplicon>CAACGTATTGTGACGCTAAACCAGGAATCGAAGGATATGAGAAGAGGAGGAAAACAGTTTTATACTACATGATTGCCGATCATTATAAAGAGACGGCAGCCAGATCAGAATACCGTGTTCCAGCAGATTTGAACCCGAAACAAGACCAATTTGGATTGATCAGAAAAGGAACCAGGTTGGAGAAGTCAGAARTGGCAGAAGACGCAAAGTATCCAATTATTCTGGTACGCGACCACAAGTTGACAGAGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31374</snp_id>
        <super_contig>c006001012.Contig1</super_contig>
        <contig_pos>56391</contig_pos>
        <strand></strand>
        <context>aatttctcaa[C/A]ttttccgaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTCTGAATCTCGAAATTTAGAAAAAGTAGAAAAATTTTCAATTTCTCAA</left_flank>
        <right_flank>TTTTCCGAATTTTCGAATTTTCTTCGGTGCATATAAACTCAAGTGCACCT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGAAATGATTTTTATAAGCATGTGGCAGTTGTATCGAGTGGGAAGTGGTAGGTGTATTTTTCAAGAGATTTTTCTTGATAAAATTTGAAAATATTTTTTTTCGAGTTCGATTTGCAATTTCAGCAAATCGGAAAATTTCGAATCGGTGAGTGGTCTGAAAGAGTAATTTTTACATTCCCAATTTTTTGTAATTTTGAAAATCCGAGTTGTTAGATTTCTTGAGTTTCAAGATTTCCGCATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTACTGAATTTCTGAATTTCTGAATTTGCGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAGTTTCTGAATTTCCGAATTTCTGAATTTCTGATTCTCTGAATTTCTGAATCTCGAAATTTAGAAAAAGTAGAAAAATTTTCAATTTCTCAACTTTTCCGAATTTTCGAATTTTCTTCGGTGCATATAAACTCAAGTGCACCTAGATTTTCGAAATACGCAATTCCTCATAACTATGCGTTTTCTAATTTTCTTAAATTTTTTTTCGAAAAACAAATTCCTTGTTTCCAGCTCCGCCCCCTATAGCTATCTGTTCACAATTTTCGATTTCTGGACCCCTGCGATTGCCGACAACGCCCGCAGGTGCCGGACCTGGTTCGCATTCCTCATGGCTCTTCTCCGTTACCTGATCCTTCGAAGTGACCTAAACCCAAAACTAGGAGATATCTCTAAACCAAAAGTGGTCCTTAAAATTATGATGGTGCCGGTTGTGATAAGCACTTGCATGTCAATTTTCTACTGGGGACGATTTATTTTCGTTGAAGGAGGCTTATGGTTTCCACCTGATGGGTAAGTGTTCTTTGTGCTAGATTTCTGTAAGAGACATTGGAATTTCGAAAACTATACAATTGATAAAGGAGTTTATCACAAACA</canonical>
            <polymorphic>TGGGAAATGATTTTTATAAGCATGTGGCAGTTGTATCGAGTGGGAAGTGGTAGGTGTATTTTTCAAGAGATTTTTCTTGATAAAATTTGAAAATATTTTTTTTCGAGTTCGATTTGCAATTTCAGCAAATCGGAAAATTTCGAATCGGTGAGTGGTCTGAAAGAGTAATTTTTACATTCCCAATTTTTTGTAATTTTGAAAATCCGAGTTGTTAGATTTCTTGAGTTTCAAGATTTCCGCATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTACTGAATTTCTGAATTTCTGAATTTGCGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAGTTTCTGAATTTCCGAATTTCTGAATTTCTGATTCTCTGAATTTCTGAATCTCGAAATTTAGAAAAAGTAGAAAAATTTTCAATTTCTCAAMTTTTCCGAATTTTCGAATTTTCTTCGGTGCATATAAACTCAAGTGCACCTAGATTTTCGAAATACGCAATTCCTCATAACTATGCGTTTTCTAATTTTCTTAAATTTTTTTTCGAAAAACAAATTCCTTGTTTCCAGCTCCGCCCCCTATAGCTATCTGTTCACAATTTTCGATTTCTGGACCCCTGCGATTGCCGACAACGCCCGCAGGTGCCGGACCTGGTTCGCATTCCTCATGGCTCTTCTCCGTTACCTGATCCTTCGAAGTGACCTAAACCCAAAACTAGGAGATATCTCTAAACCAAAAGTGGTCCTTAAAATTATGATGGTGCCGGTTGTGATAAGCACTTGCATGTCAATTTTCTACTGGGGACGATTTATTTTCGTTGAAGGAGGCTTATGGTTTCCACCTGATGGGTAAGTGTTCTTTGTGCTAGATTTCTGTAAGAGACATTGGAATTTCGAAAACTATACAATTGATAAAGGAGTTTATCACAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCCGAGTTGTTAGATTTCTT</pcr_primer_p1>
		<pcr_primer_p2>GCGTATTTCGAAAATCTAGG</pcr_primer_p2>
		<pcr_amplicon_size>368</pcr_amplicon_size>
		<canonical_amplicon>AAATCCGAGTTGTTAGATTTCTTGAGTTTCAAGATTTCCGCATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTACTGAATTTCTGAATTTCTGAATTTGCGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAGTTTCTGAATTTCCGAATTTCTGAATTTCTGATTCTCTGAATTTCTGAATCTCGAAATTTAGAAAAAGTAGAAAAATTTTCAATTTCTCAACTTTTCCGAATTTTCGAATTTTCTTCGGTGCATATAAACTCAAGTGCACCTAGATTTTCGAAATACGC</canonical_amplicon>
		<polymorphic_amplicon>AAATCCGAGTTGTTAGATTTCTTGAGTTTCAAGATTTCCGCATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTACTGAATTTCTGAATTTCTGAATTTGCGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAGTTTCTGAATTTCCGAATTTCTGAATTTCTGATTCTCTGAATTTCTGAATCTCGAAATTTAGAAAAAGTAGAAAAATTTTCAATTTCTCAAMTTTTCCGAATTTTCGAATTTTCTTCGGTGCATATAAACTCAAGTGCACCTAGATTTTCGAAATACGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31375</snp_id>
        <super_contig>c006001012.Contig1</super_contig>
        <contig_pos>99530</contig_pos>
        <strand>+</strand>
        <context>TTCTTCACAA[A/T]CAAAAGTCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTGGGATTAGATAATTTTTCGAATTTCGGGTTCAGTGAGTTCTTCACAA</left_flank>
        <right_flank>CAAAAGTCTTAAAACAGCCATTGAGATGCCGAGCCATGGGATCGATCTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTAGTTGTATGGTCCGCACGTGTGCTGAAATCATTTAGATGCTCCAAGACCAATTACTTTTTACCACCTCTTACTCTGAGTAGCCGTCAATTTTTTTCGTCTTGTATTTGCGGCACTGAGTTCTCTGATTAGTAGCCCTGTCAAAATTGGAAACACTATTGTGGGGATGATCTGAATTTCAATATTATTGATTTTTATAAGTTATTTTTTACTTTTAAAAGTCCATCGGTGAATAGGTAAATTTTGATCATACAATTAGACTCGACATTCATATCTCGTTCATACTGAATATAAAACTGATGTTCTGTATAATTTACAGGGAATCCGGTACAGCTTGGTGCCGGTTGCCATAGGTCGTTGCCATCTGTCAATGAATACCCCCTATAGTGGAACAGTGACCAGAATGTGCTGAGGATCAATGTTACAAGGGTCAATACAACGCTGAACTTGGGATTAGATAATTTTTCGAATTTCGGGTTCAGTGAGTTCTTCACAAACAAAAGTCTTAAAACAGCCATTGAGATGCCGAGCCATGGGATCGATCTTTGAAGGCCATCTCTTAATGGATCTCCCCAATATACCACCAATTGAACTAGATAATTGAAACGGTTCCAACTGAAAGAAAAAGTTCAGTTGCACTTGTTAACAAGCCGGAAGCGGATCTTCGGCGGACCGGCGGTGAACCGACGGTGGATCGACCCGTTTTCGGCTTGTTTGCAATGTAAATACCAAAAAACCTGTATTAGAAAAGTCTTCCGGGGGTACCTTGGAACAACAGAAGGGCCGGCTCTTCTAACTTCGGCCCTACATGTTTTACGTTATTTATGAACGTTACCATTCATTGTTCGATTCTAATAATTCCAATGTGCGTAAATATACTATACTAAATATCCCAAAGTGAACAAATCAGAAGCAGCGATTCCAATCATTAGCACATTCACACTATTCGATCTCATTGATTTTTGAAGGAGAATAAAAATGTGGAATATATTTGTGA</canonical>
            <polymorphic>AATTTAGTTGTATGGTCCGCACGTGTGCTGAAATCATTTAGATGCTCCAAGACCAATTACTTTTTACCACCTCTTACTCTGAGTAGCCGTCAATTTTTTTCGTCTTGTATTTGCGGCACTGAGTTCTCTGATTAGTAGCCCTGTCAAAATTGGAAACACTATTGTGGGGATGATCTGAATTTCAATATTATTGATTTTTATAAGTTATTTTTTACTTTTAAAAGTCCATCGGTGAATAGGTAAATTTTGATCATACAATTAGACTCGACATTCATATCTCGTTCATACTGAATATAAAACTGATGTTCTGTATAATTTACAGGGAATCCGGTACAGCTTGGTGCCGGTTGCCATAGGTCGTTGCCATCTGTCAATGAATACCCCCTATAGTGGAACAGTGACCAGAATGTGCTGAGGATCAATGTTACAAGGGTCAATACAACGCTGAACTTGGGATTAGATAATTTTTCGAATTTCGGGTTCAGTGAGTTCTTCACAAWCAAAAGTCTTAAAACAGCCATTGAGATGCCGAGCCATGGGATCGATCTTTGAAGGCCATCTCTTAATGGATCTCCCCAATATACCACCAATTGAACTAGATAATTGAAACGGTTCCAACTGAAAGAAAAAGTTCAGTTGCACTTGTTAACAAGCCGGAAGCGGATCTTCGGCGGACCGGCGGTGAACCGACGGTGGATCGACCCGTTTTCGGCTTGTTTGCAATGTAAATACCAAAAAACCTGTATTAGAAAAGTCTTCCGGGGGTACCTTGGAACAACAGAAGGGCCGGCTCTTCTAACTTCGGCCCTACATGTTTTACGTTATTTATGAACGTTACCATTCATTGTTCGATTCTAATAATTCCAATGTGCGTAAATATACTATACTAAATATCCCAAAGTGAACAAATCAGAAGCAGCGATTCCAATCATTAGCACATTCACACTATTCGATCTCATTGATTTTTGAAGGAGAATAAAAATGTGGAATATATTTGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATAGTGGAACAGTGACCAGAAT</pcr_primer_p1>
		<pcr_primer_p2>AACTGAACTTTTTCTTTCAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TATAGTGGAACAGTGACCAGAATGTGCTGAGGATCAATGTTACAAGGGTCAATACAACGCTGAACTTGGGATTAGATAATTTTTCGAATTTCGGGTTCAGTGAGTTCTTCACAAACAAAAGTCTTAAAACAGCCATTGAGATGCCGAGCCATGGGATCGATCTTTGAAGGCCATCTCTTAATGGATCTCCCCAATATACCACCAATTGAACTAGATAATTGAAACGGTTCCAACTGAAAGAAAAAGTTCAGTT</canonical_amplicon>
		<polymorphic_amplicon>TATAGTGGAACAGTGACCAGAATGTGCTGAGGATCAATGTTACAAGGGTCAATACAACGCTGAACTTGGGATTAGATAATTTTTCGAATTTCGGGTTCAGTGAGTTCTTCACAAWCAAAAGTCTTAAAACAGCCATTGAGATGCCGAGCCATGGGATCGATCTTTGAAGGCCATCTCTTAATGGATCTCCCCAATATACCACCAATTGAACTAGATAATTGAAACGGTTCCAACTGAAAGAAAAAGTTCAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31376</snp_id>
        <super_contig>c006001012.Contig1</super_contig>
        <contig_pos>120624</contig_pos>
        <strand>+</strand>
        <context>ACAACAAAGA[A/T]AATACGACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTCATTCAAAAATTCGGCACTGCTCATCACATTCACTGACAACAAAGA</left_flank>
        <right_flank>AATACGACAACATCTTTTTTTGGCCCAGATTTTCAAAATGCAAAACTGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTGGCTCACGTTGGCCTATTTTTTTCCACATTTTGGTCTGTTTTTCCCACATGAAACCACAACTATCCGACCGCCTGTTCATATATATTTTGGTTCCTCTTCTCTGATTTGTTCTTTTTCTTCTGACTATTTTCACAATGTCTGAATCAAGACTCAGTTCTGAAGAATCAAAAGATGATATTTATTTGATCCGAAATGTATCGAAAAAGAGGAAAGTTCATCATGTAAGCATTTCACTGTTTCGGATCATCAGTCGTTTTTTTTCTTTTTCAAGCTTTTCTCTATGAAGTATTTTCTATTGAAAAACTCATATTTAAAAATCCTGGCGTCTAATCGCCAGTGAAAAATTTTACTGGCGATTCACGCCACTTTAAAAACTGGCACCGCCAGTGCAAAAATTAAAAGCGGCGTGTGGCGCCAGAAAACGCCATTTTGGCCAGCCTAGTTTTTCATTCAAAAATTCGGCACTGCTCATCACATTCACTGACAACAAAGAAAATACGACAACATCTTTTTTTGGCCCAGATTTTCAAAATGCAAAACTGCACCGCTGATACCAGCTATCTGGCCAGTCCGGAACTATTGTCCCAAGTTTTCCAGTCTATCAGTTTCATAGAACTCTTTCCGTTCACATTTGGTGTTTACTGTATCATTTACAAGACGCCTGCTAATCTAAAACAAGTGAAAAATCTGCTTTTGAACCTTTATATCTGGTGTATGCTGTCAGATTTTATGGTGTGTTTTCACAACACTGTTGTGTTGGAAGGCCTTACGCATATATTCCTAGCTTTTGGTCTTGGCCTCATTGATGCTCCAGACATCTTGTTTTACATTGGATGCTGTTGTATAGCAGGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTCTTCCGGATTTTCTAAAATTTTATTCCGCTCATGTCTGATAACAGGTAATGTTGTAGTAATAGAATCTGAGAGAATAAAAAAACGCCGTCAGTTAAGCTAGATAATTT</canonical>
            <polymorphic>TATTTGGCTCACGTTGGCCTATTTTTTTCCACATTTTGGTCTGTTTTTCCCACATGAAACCACAACTATCCGACCGCCTGTTCATATATATTTTGGTTCCTCTTCTCTGATTTGTTCTTTTTCTTCTGACTATTTTCACAATGTCTGAATCAAGACTCAGTTCTGAAGAATCAAAAGATGATATTTATTTGATCCGAAATGTATCGAAAAAGAGGAAAGTTCATCATGTAAGCATTTCACTGTTTCGGATCATCAGTCGTTTTTTTTCTTTTTCAAGCTTTTCTCTATGAAGTATTTTCTATTGAAAAACTCATATTTAAAAATCCTGGCGTCTAATCGCCAGTGAAAAATTTTACTGGCGATTCACGCCACTTTAAAAACTGGCACCGCCAGTGCAAAAATTAAAAGCGGCGTGTGGCGCCAGAAAACGCCATTTTGGCCAGCCTAGTTTTTCATTCAAAAATTCGGCACTGCTCATCACATTCACTGACAACAAAGAWAATACGACAACATCTTTTTTTGGCCCAGATTTTCAAAATGCAAAACTGCACCGCTGATACCAGCTATCTGGCCAGTCCGGAACTATTGTCCCAAGTTTTCCAGTCTATCAGTTTCATAGAACTCTTTCCGTTCACATTTGGTGTTTACTGTATCATTTACAAGACGCCTGCTAATCTAAAACAAGTGAAAAATCTGCTTTTGAACCTTTATATCTGGTGTATGCTGTCAGATTTTATGGTGTGTTTTCACAACACTGTTGTGTTGGAAGGCCTTACGCATATATTCCTAGCTTTTGGTCTTGGCCTCATTGATGCTCCAGACATCTTGTTTTACATTGGATGCTGTTGTATAGCAGGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTCTTCCGGATTTTCTAAAATTTTATTCCGCTCATGTCTGATAACAGGTAATGTTGTAGTAATAGAATCTGAGAGAATAAAAAAACGCCGTCAGTTAAGCTAGATAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCAGTGCAAAAATTAAAAG</pcr_primer_p1>
		<pcr_primer_p2>AATGTGAACGGAAAGAGTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCCAGTGCAAAAATTAAAAGCGGCGTGTGGCGCCAGAAAACGCCATTTTGGCCAGCCTAGTTTTTCATTCAAAAATTCGGCACTGCTCATCACATTCACTGACAACAAAGAAAATACGACAACATCTTTTTTTGGCCCAGATTTTCAAAATGCAAAACTGCACCGCTGATACCAGCTATCTGGCCAGTCCGGAACTATTGTCCCAAGTTTTCCAGTCTATCAGTTTCATAGAACTCTTTCCGTTCACATT</canonical_amplicon>
		<polymorphic_amplicon>GCCAGTGCAAAAATTAAAAGCGGCGTGTGGCGCCAGAAAACGCCATTTTGGCCAGCCTAGTTTTTCATTCAAAAATTCGGCACTGCTCATCACATTCACTGACAACAAAGAWAATACGACAACATCTTTTTTTGGCCCAGATTTTCAAAATGCAAAACTGCACCGCTGATACCAGCTATCTGGCCAGTCCGGAACTATTGTCCCAAGTTTTCCAGTCTATCAGTTTCATAGAACTCTTTCCGTTCACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31377</snp_id>
        <super_contig>c006001012.Contig1</super_contig>
        <contig_pos>121034</contig_pos>
        <strand>+</strand>
        <context>attttctaaa[A/G]ttttattccg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACATGAGCGGAATTCCTTATTCCTTATTCCTTCTTCCGGATTTTCTAAA</left_flank>
        <right_flank>TTTTATTCCGCTCATGTCTGATAACAGGTAATGTTGTAGTAATAGAATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGTGTGGCGCCAGAAAACGCCATTTTGGCCAGCCTAGTTTTTCATTCAAAAATTCGGCACTGCTCATCACATTCACTGACAACAAAGAAAATACGACAACATCTTTTTTTGGCCCAGATTTTCAAAATGCAAAACTGCACCGCTGATACCAGCTATCTGGCCAGTCCGGAACTATTGTCCCAAGTTTTCCAGTCTATCAGTTTCATAGAACTCTTTCCGTTCACATTTGGTGTTTACTGTATCATTTACAAGACGCCTGCTAATCTAAAACAAGTGAAAAATCTGCTTTTGAACCTTTATATCTGGTGTATGCTGTCAGATTTTATGGTGTGTTTTCACAACACTGTTGTGTTGGAAGGCCTTACGCATATATTCCTAGCTTTTGGTCTTGGCCTCATTGATGCTCCAGACATCTTGTTTTACATTGGATGCTGTTGTATAGCAGGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTCTTCCGGATTTTCTAAAATTTTATTCCGCTCATGTCTGATAACAGGTAATGTTGTAGTAATAGAATCTGAGAGAATAAAAAAACGCCGTCAGTTAAGCTAGATAATTTCCGAGCTAAAAAATGATTTGGAGTAGGAGAGTTCTCAAAGCTTAACGACGTACAGTGCTTTCGGTTGTTTGAATGAAAAGAAGGTTCCTCTAAATTGTGTTCATTCAAGTCTCTCTGGAAAATTCCCTTGTGGGCACGCCGTTGAAGGTGCCTCGCCGCTACCAGCTGCGCTACGGTGGCGGGAGTGGAAGCGCCCACCAGCGGTACCAGTTTGTCTTCTACCCTCCTATCTGAATATCCCTGAGCAAGAATCAGCAAGAGCAGACGTGATTCAAGAACATCCATGTTTGAAATTGGTGGAAACTGGAGATCGCCAACTCTTCGTTTTCACAACAAACAGTCTAACTTCATTGCTAACAACAGTTCCACGTAGTTTTTTGATTGCTGCCAAACTCGTGTTTTTCGTTTTC</canonical>
            <polymorphic>GCGTGTGGCGCCAGAAAACGCCATTTTGGCCAGCCTAGTTTTTCATTCAAAAATTCGGCACTGCTCATCACATTCACTGACAACAAAGAAAATACGACAACATCTTTTTTTGGCCCAGATTTTCAAAATGCAAAACTGCACCGCTGATACCAGCTATCTGGCCAGTCCGGAACTATTGTCCCAAGTTTTCCAGTCTATCAGTTTCATAGAACTCTTTCCGTTCACATTTGGTGTTTACTGTATCATTTACAAGACGCCTGCTAATCTAAAACAAGTGAAAAATCTGCTTTTGAACCTTTATATCTGGTGTATGCTGTCAGATTTTATGGTGTGTTTTCACAACACTGTTGTGTTGGAAGGCCTTACGCATATATTCCTAGCTTTTGGTCTTGGCCTCATTGATGCTCCAGACATCTTGTTTTACATTGGATGCTGTTGTATAGCAGGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTCTTCCGGATTTTCTAAARTTTTATTCCGCTCATGTCTGATAACAGGTAATGTTGTAGTAATAGAATCTGAGAGAATAAAAAAACGCCGTCAGTTAAGCTAGATAATTTCCGAGCTAAAAAATGATTTGGAGTAGGAGAGTTCTCAAAGCTTAACGACGTACAGTGCTTTCGGTTGTTTGAATGAAAAGAAGGTTCCTCTAAATTGTGTTCATTCAAGTCTCTCTGGAAAATTCCCTTGTGGGCACGCCGTTGAAGGTGCCTCGCCGCTACCAGCTGCGCTACGGTGGCGGGAGTGGAAGCGCCCACCAGCGGTACCAGTTTGTCTTCTACCCTCCTATCTGAATATCCCTGAGCAAGAATCAGCAAGAGCAGACGTGATTCAAGAACATCCATGTTTGAAATTGGTGGAAACTGGAGATCGCCAACTCTTCGTTTTCACAACAAACAGTCTAACTTCATTGCTAACAACAGTTCCACGTAGTTTTTTGATTGCTGCCAAACTCGTGTTTTTCGTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>409 290 212 51 38</canonical_bands>
                <polymorphic_bands>409 290 250 51</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>409 171 119 97 87 51 38 28</canonical_bands>
                <polymorphic_bands>409 171 125 119 97 51 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATATTCCTAGCTTTTGGTCTTG</pcr_primer_p1>
		<pcr_primer_p2>CTCTCCTACTCCAAATCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATATTCCTAGCTTTTGGTCTTGGCCTCATTGATGCTCCAGACATCTTGTTTTACATTGGATGCTGTTGTATAGCAGGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTCTTCCGGATTTTCTAAAATTTTATTCCGCTCATGTCTGATAACAGGTAATGTTGTAGTAATAGAATCTGAGAGAATAAAAAAACGCCGTCAGTTAAGCTAGATAATTTCCGAGCTAAAAAATGATTTGGAGTAGGAGAG</canonical_amplicon>
		<polymorphic_amplicon>TATATTCCTAGCTTTTGGTCTTGGCCTCATTGATGCTCCAGACATCTTGTTTTACATTGGATGCTGTTGTATAGCAGGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTCTTCCGGATTTTCTAAARTTTTATTCCGCTCATGTCTGATAACAGGTAATGTTGTAGTAATAGAATCTGAGAGAATAAAAAAACGCCGTCAGTTAAGCTAGATAATTTCCGAGCTAAAAAATGATTTGGAGTAGGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31378</snp_id>
        <super_contig>c006001012.Contig1</super_contig>
        <contig_pos>121058</contig_pos>
        <strand></strand>
        <context>atgtctgATA[A/G]CAGGTAATGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATTCCTTCTTCCGGATTTTCTAAAATTTTATTCCGCTCATGTCTGATA</left_flank>
        <right_flank>CAGGTAATGTTGTAGTAATAGAATCTGAGAGAATAAAAAAACGCCGTCAG</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGCCAGCCTAGTTTTTCATTCAAAAATTCGGCACTGCTCATCACATTCACTGACAACAAAGAAAATACGACAACATCTTTTTTTGGCCCAGATTTTCAAAATGCAAAACTGCACCGCTGATACCAGCTATCTGGCCAGTCCGGAACTATTGTCCCAAGTTTTCCAGTCTATCAGTTTCATAGAACTCTTTCCGTTCACATTTGGTGTTTACTGTATCATTTACAAGACGCCTGCTAATCTAAAACAAGTGAAAAATCTGCTTTTGAACCTTTATATCTGGTGTATGCTGTCAGATTTTATGGTGTGTTTTCACAACACTGTTGTGTTGGAAGGCCTTACGCATATATTCCTAGCTTTTGGTCTTGGCCTCATTGATGCTCCAGACATCTTGTTTTACATTGGATGCTGTTGTATAGCAGGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTCTTCCGGATTTTCTAAAATTTTATTCCGCTCATGTCTGATAACAGGTAATGTTGTAGTAATAGAATCTGAGAGAATAAAAAAACGCCGTCAGTTAAGCTAGATAATTTCCGAGCTAAAAAATGATTTGGAGTAGGAGAGTTCTCAAAGCTTAACGACGTACAGTGCTTTCGGTTGTTTGAATGAAAAGAAGGTTCCTCTAAATTGTGTTCATTCAAGTCTCTCTGGAAAATTCCCTTGTGGGCACGCCGTTGAAGGTGCCTCGCCGCTACCAGCTGCGCTACGGTGGCGGGAGTGGAAGCGCCCACCAGCGGTACCAGTTTGTCTTCTACCCTCCTATCTGAATATCCCTGAGCAAGAATCAGCAAGAGCAGACGTGATTCAAGAACATCCATGTTTGAAATTGGTGGAAACTGGAGATCGCCAACTCTTCGTTTTCACAACAAACAGTCTAACTTCATTGCTAACAACAGTTCCACGTAGTTTTTTGATTGCTGCCAAACTCGTGTTTTTCGTTTTCACTTGGTATAAGACTTGGAAAAGA</canonical>
            <polymorphic>TTTGGCCAGCCTAGTTTTTCATTCAAAAATTCGGCACTGCTCATCACATTCACTGACAACAAAGAAAATACGACAACATCTTTTTTTGGCCCAGATTTTCAAAATGCAAAACTGCACCGCTGATACCAGCTATCTGGCCAGTCCGGAACTATTGTCCCAAGTTTTCCAGTCTATCAGTTTCATAGAACTCTTTCCGTTCACATTTGGTGTTTACTGTATCATTTACAAGACGCCTGCTAATCTAAAACAAGTGAAAAATCTGCTTTTGAACCTTTATATCTGGTGTATGCTGTCAGATTTTATGGTGTGTTTTCACAACACTGTTGTGTTGGAAGGCCTTACGCATATATTCCTAGCTTTTGGTCTTGGCCTCATTGATGCTCCAGACATCTTGTTTTACATTGGATGCTGTTGTATAGCAGGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTCTTCCGGATTTTCTAAAATTTTATTCCGCTCATGTCTGATARCAGGTAATGTTGTAGTAATAGAATCTGAGAGAATAAAAAAACGCCGTCAGTTAAGCTAGATAATTTCCGAGCTAAAAAATGATTTGGAGTAGGAGAGTTCTCAAAGCTTAACGACGTACAGTGCTTTCGGTTGTTTGAATGAAAAGAAGGTTCCTCTAAATTGTGTTCATTCAAGTCTCTCTGGAAAATTCCCTTGTGGGCACGCCGTTGAAGGTGCCTCGCCGCTACCAGCTGCGCTACGGTGGCGGGAGTGGAAGCGCCCACCAGCGGTACCAGTTTGTCTTCTACCCTCCTATCTGAATATCCCTGAGCAAGAATCAGCAAGAGCAGACGTGATTCAAGAACATCCATGTTTGAAATTGGTGGAAACTGGAGATCGCCAACTCTTCGTTTTCACAACAAACAGTCTAACTTCATTGCTAACAACAGTTCCACGTAGTTTTTTGATTGCTGCCAAACTCGTGTTTTTCGTTTTCACTTGGTATAAGACTTGGAAAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATATTCCTAGCTTTTGGTCTTG</pcr_primer_p1>
		<pcr_primer_p2>CTCTCCTACTCCAAATCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATATTCCTAGCTTTTGGTCTTGGCCTCATTGATGCTCCAGACATCTTGTTTTACATTGGATGCTGTTGTATAGCAGGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTCTTCCGGATTTTCTAAAATTTTATTCCGCTCATGTCTGATAACAGGTAATGTTGTAGTAATAGAATCTGAGAGAATAAAAAAACGCCGTCAGTTAAGCTAGATAATTTCCGAGCTAAAAAATGATTTGGAGTAGGAGAG</canonical_amplicon>
		<polymorphic_amplicon>TATATTCCTAGCTTTTGGTCTTGGCCTCATTGATGCTCCAGACATCTTGTTTTACATTGGATGCTGTTGTATAGCAGGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTCTTCCGGATTTTCTAAAATTTTATTCCGCTCATGTCTGATARCAGGTAATGTTGTAGTAATAGAATCTGAGAGAATAAAAAAACGCCGTCAGTTAAGCTAGATAATTTCCGAGCTAAAAAATGATTTGGAGTAGGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31379</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>16486</contig_pos>
        <strand>+</strand>
        <context>GAAAAATGTA[A/T]TTTTTTTGCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATATAAAATTATATATATTTGAAATCGCAAATTGAAACAGAAAAATGTA</left_flank>
        <right_flank>TTTTTTTGCGAAAAGATTCATGTAAATATGGTTTATAAGCATAATTGTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAGTTTTGAAATGTGAAGAGGTCTCAAAGTTTTATTACTTGAAATTCAGGGTGAGTATGGAGGAGATAAAGATGAAAGTGAAAAAATTGGTAGTGGATGAGAGACGGAGAACGAAATACGATTGAGCCAAAACTAGCAAACAAGAAATGAAAATTTCTATGACTTTGTTTTGACGGAATTCCTCTCTTTTCCAACTGCCACTTATTTTATCTCATCCCTTTTCTCCCTAAGATGCCCATTTTTCTTGGGATATCCATAAACATGGGGTTCGGTATCAACACTGAAAAAGAATAGAACATTAGCGCCAGATAATTCAAGTAAAATGAAACAAAAACAAAATTACACATGTTAATATTTGATAAACCCAGAATGTGTTTTATTTGAGAGAGTCTACCGTAACTAGGTATCCGGTTCACACCTTCTGGTTCGGAACTTAGAAGATTACAAAATATAAAATTATATATATTTGAAATCGCAAATTGAAACAGAAAAATGTATTTTTTTTGCGAAAAGATTCATGTAAATATGGTTTATAAGCATAATTGTCAAACAACTTAATGATTCATAAATTGCAAGTAAAAGACTGAAATAGGCATGCTACAAAGGCATTCTGTCAAAAACAGTAACATTGACCAATAAACGTCCACTATACTTTTATTTTATCATCTTGGCAATAGAAACACATTTCGTGACTAGCAAGTATGTTCTAATAAATGCTCAAACTGAATAATAACCTGAACGAACGCGGACCTTTTTTGTTTTCTCAAGCGTGTAGAAAAAATAGGAACGACACCGGAATCTCATATTTTCTTTTTTTTTGGTCAAAGATGTGATGGTGGGCAGGCGGGGCAGAAAAAGAACAAAAACGAAGAAGAAGTAGAGTCTGTGGTGGAATAATTGAAAAACCAGCGACGAATCAACGAGAAAAAGAATGAAAAACACGTAGGAGTAGGGCATGTAGATCTGGGTGCATTCATAGATAACAAAGTGAACAGGAC</canonical>
            <polymorphic>CAAAGTTTTGAAATGTGAAGAGGTCTCAAAGTTTTATTACTTGAAATTCAGGGTGAGTATGGAGGAGATAAAGATGAAAGTGAAAAAATTGGTAGTGGATGAGAGACGGAGAACGAAATACGATTGAGCCAAAACTAGCAAACAAGAAATGAAAATTTCTATGACTTTGTTTTGACGGAATTCCTCTCTTTTCCAACTGCCACTTATTTTATCTCATCCCTTTTCTCCCTAAGATGCCCATTTTTCTTGGGATATCCATAAACATGGGGTTCGGTATCAACACTGAAAAAGAATAGAACATTAGCGCCAGATAATTCAAGTAAAATGAAACAAAAACAAAATTACACATGTTAATATTTGATAAACCCAGAATGTGTTTTATTTGAGAGAGTCTACCGTAACTAGGTATCCGGTTCACACCTTCTGGTTCGGAACTTAGAAGATTACAAAATATAAAATTATATATATTTGAAATCGCAAATTGAAACAGAAAAATGTAWTTTTTTTGCGAAAAGATTCATGTAAATATGGTTTATAAGCATAATTGTCAAACAACTTAATGATTCATAAATTGCAAGTAAAAGACTGAAATAGGCATGCTACAAAGGCATTCTGTCAAAAACAGTAACATTGACCAATAAACGTCCACTATACTTTTATTTTATCATCTTGGCAATAGAAACACATTTCGTGACTAGCAAGTATGTTCTAATAAATGCTCAAACTGAATAATAACCTGAACGAACGCGGACCTTTTTTGTTTTCTCAAGCGTGTAGAAAAAATAGGAACGACACCGGAATCTCATATTTTCTTTTTTTTTGGTCAAAGATGTGATGGTGGGCAGGCGGGGCAGAAAAAGAACAAAAACGAAGAAGAAGTAGAGTCTGTGGTGGAATAATTGAAAAACCAGCGACGAATCAACGAGAAAAAGAATGAAAAACACGTAGGAGTAGGGCATGTAGATCTGGGTGCATTCATAGATAACAAAGTGAACAGGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGAGAGTCTACCGTAACTAGG</pcr_primer_p1>
		<pcr_primer_p2>TCAATGTTACTGTTTTTGACAGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGAGAGAGTCTACCGTAACTAGGTATCCGGTTCACACCTTCTGGTTCGGAACTTAGAAGATTACAAAATATAAAATTATATATATTTGAAATCGCAAATTGAAACAGAAAAATGTATTTTTTTTGCGAAAAGATTCATGTAAATATGGTTTATAAGCATAATTGTCAAACAACTTAATGATTCATAAATTGCAAGTAAAAGACTGAAATAGGCATGCTACAAAGGCATTCTGTCAAAAACAGTAACATTGA</canonical_amplicon>
		<polymorphic_amplicon>TGAGAGAGTCTACCGTAACTAGGTATCCGGTTCACACCTTCTGGTTCGGAACTTAGAAGATTACAAAATATAAAATTATATATATTTGAAATCGCAAATTGAAACAGAAAAATGTAWTTTTTTTGCGAAAAGATTCATGTAAATATGGTTTATAAGCATAATTGTCAAACAACTTAATGATTCATAAATTGCAAGTAAAAGACTGAAATAGGCATGCTACAAAGGCATTCTGTCAAAAACAGTAACATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31380</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>17574</contig_pos>
        <strand></strand>
        <context>acacaaaacc[A/T]gaaataaaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAAAAGGTTTCTTAATAACTTCAACAAAAAGAAAAAAAAACACAAAACC</left_flank>
        <right_flank>GAAATAAAAATAGTTGGTTATTGGAATGAGACAAAAAACAGCAGCTGCTT</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAGAATCACCAAGTTTGAATGGTTGGGCGAGATTCAGGAGAAACAACTTCTGAACCTCTGAACTCGTTCGTAGTTTTTATTGTTATGATTTTCACATAATTAGTAAGAATATAATAATACATAATTCAATTGAATTTTGTCTGGAAACTAATAAGAAGTTCCACACAATCATTTCCGTGGGAAAAAGTGCATGATCGTATTTAGTTTTCTGAAGTTAAAAAATGGAACTGTGAGTTTTTTTCAATAATTTTTGCACAGTTGGCCGACCTGAGAATCTATAAACGATCAATCAAAAATTTTGCACTGCAGCAAACATTAAACTGGAATATCTTTAGTTATTAGTGCGTTCCCTGGTAATCTCCTTGGAAAAAGTTGATAAATTTTGAAATCACAATCATCGGAATCTAGAAATAAATTGAAAAATAACGTTAGAAGTTTCAATGTTTTAGAAAAGGTTTCTTAATAACTTCAACAAAAAGAAAAAAAAACACAAAACCAGAAATAAAAATAGTTGGTTATTGGAATGAGACAAAAAACAGCAGCTGCTTGAGAAGTCATTCTTTTTTTAGATTTCTTGCATATTTCGTGGTTCTAGTTTTTTTTCGTATGTTTTTTCAATGACTTGTTGCTATTTTTGGTACTGAGCCAAAATTTGTATTAAACCGAAATTGAAATTAAAATTTCAAAAAGCTAACTTAATAGTGATTTATCAGAAACATTTTTTTCTGATAAGCTTTTATATGACTTTCCAAATACAGGGTATTTTTCAACACTCACATTGCTGACTTCATGGGAAAACCTACAAAATATCCTTGATTTTTTTTTTCCCGCTTACAGCAAAATGGAAATAAAAAGACATATGGAAAATAGTTATTTCAAAAGAACGAGGAAAATTATAATTTGAAATCGGTATTAAAATATTTTTGCGAATTATATTCACATTGAAAATCTAGGAGCATGCACAGTTAATCGAAATTAAGCTGGTTATTTTTCAGGTG</canonical>
            <polymorphic>ACAAGAATCACCAAGTTTGAATGGTTGGGCGAGATTCAGGAGAAACAACTTCTGAACCTCTGAACTCGTTCGTAGTTTTTATTGTTATGATTTTCACATAATTAGTAAGAATATAATAATACATAATTCAATTGAATTTTGTCTGGAAACTAATAAGAAGTTCCACACAATCATTTCCGTGGGAAAAAGTGCATGATCGTATTTAGTTTTCTGAAGTTAAAAAATGGAACTGTGAGTTTTTTTCAATAATTTTTGCACAGTTGGCCGACCTGAGAATCTATAAACGATCAATCAAAAATTTTGCACTGCAGCAAACATTAAACTGGAATATCTTTAGTTATTAGTGCGTTCCCTGGTAATCTCCTTGGAAAAAGTTGATAAATTTTGAAATCACAATCATCGGAATCTAGAAATAAATTGAAAAATAACGTTAGAAGTTTCAATGTTTTAGAAAAGGTTTCTTAATAACTTCAACAAAAAGAAAAAAAAACACAAAACCWGAAATAAAAATAGTTGGTTATTGGAATGAGACAAAAAACAGCAGCTGCTTGAGAAGTCATTCTTTTTTTAGATTTCTTGCATATTTCGTGGTTCTAGTTTTTTTTCGTATGTTTTTTCAATGACTTGTTGCTATTTTTGGTACTGAGCCAAAATTTGTATTAAACCGAAATTGAAATTAAAATTTCAAAAAGCTAACTTAATAGTGATTTATCAGAAACATTTTTTTCTGATAAGCTTTTATATGACTTTCCAAATACAGGGTATTTTTCAACACTCACATTGCTGACTTCATGGGAAAACCTACAAAATATCCTTGATTTTTTTTTTCCCGCTTACAGCAAAATGGAAATAAAAAGACATATGGAAAATAGTTATTTCAAAAGAACGAGGAAAATTATAATTTGAAATCGGTATTAAAATATTTTTGCGAATTATATTCACATTGAAAATCTAGGAGCATGCACAGTTAATCGAAATTAAGCTGGTTATTTTTCAGGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATCATCGGAATCTAGAAATAA</pcr_primer_p1>
		<pcr_primer_p2>TACCAAAAATAGCAACAAGTCAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAATCATCGGAATCTAGAAATAAATTGAAAAATAACGTTAGAAGTTTCAATGTTTTAGAAAAGGTTTCTTAATAACTTCAACAAAAAGAAAAAAAAACACAAAACCAGAAATAAAAATAGTTGGTTATTGGAATGAGACAAAAAACAGCAGCTGCTTGAGAAGTCATTCTTTTTTTAGATTTCTTGCATATTTCGTGGTTCTAGTTTTTTTTCGTATGTTTTTTCAATGACTTGTTGCTATTTTTGGTA</canonical_amplicon>
		<polymorphic_amplicon>CAATCATCGGAATCTAGAAATAAATTGAAAAATAACGTTAGAAGTTTCAATGTTTTAGAAAAGGTTTCTTAATAACTTCAACAAAAAGAAAAAAAAACACAAAACCWGAAATAAAAATAGTTGGTTATTGGAATGAGACAAAAAACAGCAGCTGCTTGAGAAGTCATTCTTTTTTTAGATTTCTTGCATATTTCGTGGTTCTAGTTTTTTTTCGTATGTTTTTTCAATGACTTGTTGCTATTTTTGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31381</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>17893</contig_pos>
        <strand>+</strand>
        <context>ATATCCTTGA[C/G]TTTTTTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCAACACTCACATTGCTGACTTCATGGGAAAACCTACAAAATATCCTTGA</left_flank>
        <right_flank>TTTTTTTTTCCCGCTTACAGCAAAATGGAAATAAAAAGACATATGGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTGGAATATCTTTAGTTATTAGTGCGTTCCCTGGTAATCTCCTTGGAAAAAGTTGATAAATTTTGAAATCACAATCATCGGAATCTAGAAATAAATTGAAAAATAACGTTAGAAGTTTCAATGTTTTAGAAAAGGTTTCTTAATAACTTCAACAAAAAGAAAAAAAAACACAAAACCAGAAATAAAAATAGTTGGTTATTGGAATGAGACAAAAAACAGCAGCTGCTTGAGAAGTCATTCTTTTTTTAGATTTCTTGCATATTTCGTGGTTCTAGTTTTTTTTCGTATGTTTTTTCAATGACTTGTTGCTATTTTTGGTACTGAGCCAAAATTTGTATTAAACCGAAATTGAAATTAAAATTTCAAAAAGCTAACTTAATAGTGATTTATCAGAAACATTTTTTTCTGATAAGCTTTTATATGACTTTCCAAATACAGGGTATTTTTCAACACTCACATTGCTGACTTCATGGGAAAACCTACAAAATATCCTTGATTTTTTTTTTCCCGCTTACAGCAAAATGGAAATAAAAAGACATATGGAAAATAGTTATTTCAAAAGAACGAGGAAAATTATAATTTGAAATCGGTATTAAAATATTTTTGCGAATTATATTCACATTGAAAATCTAGGAGCATGCACAGTTAATCGAAATTAAGCTGGTTATTTTTCAGGTGTTAATCTGTTTTAAATTTTTTTTGATGCCGTTCCAGTGAGAAATTATCGAACTTTGAATGCAAAAAGTAACATGGAAAACAACTTCGGAAGTAGTGTCATGAGATGTACGTAAATGCAGCAAAAAAACGAACGAGTAATGTAAAAAAGAAGAAAAACACTTATGCGGCTAGTAAAAACAGGAAATCGGATCTCCTCGGTTAGGTGTGTTATCAAAAAAACTGTTTTTTCCTATAACCGCAAGATGCAAATTAGACCTCCAGTAATTTATGTTAGCTGAATTATTGGGAGAACTCTACGAATGAATTCATATTAAACCGT</canonical>
            <polymorphic>AAACTGGAATATCTTTAGTTATTAGTGCGTTCCCTGGTAATCTCCTTGGAAAAAGTTGATAAATTTTGAAATCACAATCATCGGAATCTAGAAATAAATTGAAAAATAACGTTAGAAGTTTCAATGTTTTAGAAAAGGTTTCTTAATAACTTCAACAAAAAGAAAAAAAAACACAAAACCAGAAATAAAAATAGTTGGTTATTGGAATGAGACAAAAAACAGCAGCTGCTTGAGAAGTCATTCTTTTTTTAGATTTCTTGCATATTTCGTGGTTCTAGTTTTTTTTCGTATGTTTTTTCAATGACTTGTTGCTATTTTTGGTACTGAGCCAAAATTTGTATTAAACCGAAATTGAAATTAAAATTTCAAAAAGCTAACTTAATAGTGATTTATCAGAAACATTTTTTTCTGATAAGCTTTTATATGACTTTCCAAATACAGGGTATTTTTCAACACTCACATTGCTGACTTCATGGGAAAACCTACAAAATATCCTTGASTTTTTTTTTCCCGCTTACAGCAAAATGGAAATAAAAAGACATATGGAAAATAGTTATTTCAAAAGAACGAGGAAAATTATAATTTGAAATCGGTATTAAAATATTTTTGCGAATTATATTCACATTGAAAATCTAGGAGCATGCACAGTTAATCGAAATTAAGCTGGTTATTTTTCAGGTGTTAATCTGTTTTAAATTTTTTTTGATGCCGTTCCAGTGAGAAATTATCGAACTTTGAATGCAAAAAGTAACATGGAAAACAACTTCGGAAGTAGTGTCATGAGATGTACGTAAATGCAGCAAAAAAACGAACGAGTAATGTAAAAAAGAAGAAAAACACTTATGCGGCTAGTAAAAACAGGAAATCGGATCTCCTCGGTTAGGTGTGTTATCAAAAAAACTGTTTTTTCCTATAACCGCAAGATGCAAATTAGACCTCCAGTAATTTATGTTAGCTGAATTATTGGGAGAACTCTACGAATGAATTCATATTAAACCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGTATTTTTCAACACTCACA</pcr_primer_p1>
		<pcr_primer_p2>AAAACAGATTAACACCTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GGGTATTTTTCAACACTCACATTGCTGACTTCATGGGAAAACCTACAAAATATCCTTGATTTTTTTTTTCCCGCTTACAGCAAAATGGAAATAAAAAGACATATGGAAAATAGTTATTTCAAAAGAACGAGGAAAATTATAATTTGAAATCGGTATTAAAATATTTTTGCGAATTATATTCACATTGAAAATCTAGGAGCATGCACAGTTAATCGAAATTAAGCTGGTTATTTTTCAGGTGTTAATCTGTTTT</canonical_amplicon>
		<polymorphic_amplicon>GGGTATTTTTCAACACTCACATTGCTGACTTCATGGGAAAACCTACAAAATATCCTTGASTTTTTTTTTCCCGCTTACAGCAAAATGGAAATAAAAAGACATATGGAAAATAGTTATTTCAAAAGAACGAGGAAAATTATAATTTGAAATCGGTATTAAAATATTTTTGCGAATTATATTCACATTGAAAATCTAGGAGCATGCACAGTTAATCGAAATTAAGCTGGTTATTTTTCAGGTGTTAATCTGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31382</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>25072</contig_pos>
        <strand>+</strand>
        <context>TCGTTCTGTT[A/T]GTCCTACTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGGATATTTATGAATTTTTCCCGCCTATTATTTATGAATTCGTTCTGTT</left_flank>
        <right_flank>GTCCTACTCACTCATCGGGAGGAGAACGAGAACTGACTGTTTTTGAACAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTACATTAAAGGAAAAAGTTGGCACAAAAAAAAGTTTTGCCCCTTTCTTTCCAACGGCCTTCATAGCCGCTTTGTTCTGCGTGATAACGCATTAAACGGAGTTTTTTTTTAAGTTCACGCACCACTGGGTCAAGTCGGCTGGTGTGCATTAAAAGAAAGGAAAAATGGTGGGAGTAGGAGGAGAAAGAGACCACTACTTTACATTAATTGTTTTCTGTTGGTTTTTCGTCATCTTTCATCTTTTAGACTGTTTGGCTTTAATAATTGAAAAGTTACTCAAATGAATACTTCACTATTCCATATTCCCGAATAATATGTATGTTATTTCAGGTGATTTGCGTTTCAAAATTGTACAATCTTTGTTGATTTTGTATTATTCAACTTCTGCTATTCTAAATTGTTCAGCCGGTGTCTTTGGAAACCTTTCAGACAACTAGCATTTTTTGTCGGATATTTATGAATTTTTCCCGCCTATTATTTATGAATTCGTTCTGTTTGTCCTACTCACTCATCGGGAGGAGAACGAGAACTGACTGTTTTTGAACATAAAGTCAATGGAAGTTCCTTTATTGCGTTTGAAAAATTCAATTAAAAGTCTCTGACAAGTTATTTTTGTGATTATTCACTGTAATACTCTTGTTTTATGTCGGTTGAAAAAGTGTAATGAGAAATCTAAGAAAAGAAATGACGACCACTCAAGGATCCGATTTCTTACTCGACGCATCCTAATGAGCTTAAGCACACGTTCTTGTATATATCTTTTGTCAAGCTTTTCTCTATTTATTCTTATATTATTTGAATTAGAACAGTTCTTAATTCTAAGTAAAAGTTGTGACTGAATTGCCTTCTGCTCATCAGTATTGTTTTATTATCTTATTAGATGAACTTGAAACGTTTTACAGTTATGAATTTTTTCTGTAATGGAACTGCAGAAAATTGATAAGATTTCGAAACGGCGATCAAAGAAACATCAACTTCAGAGAAAATATTGATTATA</canonical>
            <polymorphic>ACTTTACATTAAAGGAAAAAGTTGGCACAAAAAAAAGTTTTGCCCCTTTCTTTCCAACGGCCTTCATAGCCGCTTTGTTCTGCGTGATAACGCATTAAACGGAGTTTTTTTTTAAGTTCACGCACCACTGGGTCAAGTCGGCTGGTGTGCATTAAAAGAAAGGAAAAATGGTGGGAGTAGGAGGAGAAAGAGACCACTACTTTACATTAATTGTTTTCTGTTGGTTTTTCGTCATCTTTCATCTTTTAGACTGTTTGGCTTTAATAATTGAAAAGTTACTCAAATGAATACTTCACTATTCCATATTCCCGAATAATATGTATGTTATTTCAGGTGATTTGCGTTTCAAAATTGTACAATCTTTGTTGATTTTGTATTATTCAACTTCTGCTATTCTAAATTGTTCAGCCGGTGTCTTTGGAAACCTTTCAGACAACTAGCATTTTTTGTCGGATATTTATGAATTTTTCCCGCCTATTATTTATGAATTCGTTCTGTTWGTCCTACTCACTCATCGGGAGGAGAACGAGAACTGACTGTTTTTGAACATAAAGTCAATGGAAGTTCCTTTATTGCGTTTGAAAAATTCAATTAAAAGTCTCTGACAAGTTATTTTTGTGATTATTCACTGTAATACTCTTGTTTTATGTCGGTTGAAAAAGTGTAATGAGAAATCTAAGAAAAGAAATGACGACCACTCAAGGATCCGATTTCTTACTCGACGCATCCTAATGAGCTTAAGCACACGTTCTTGTATATATCTTTTGTCAAGCTTTTCTCTATTTATTCTTATATTATTTGAATTAGAACAGTTCTTAATTCTAAGTAAAAGTTGTGACTGAATTGCCTTCTGCTCATCAGTATTGTTTTATTATCTTATTAGATGAACTTGAAACGTTTTACAGTTATGAATTTTTTCTGTAATGGAACTGCAGAAAATTGATAAGATTTCGAAACGGCGATCAAAGAAACATCAACTTCAGAGAAAATATTGATTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCGGATATTTATGAATTTTTC</pcr_primer_p1>
		<pcr_primer_p2>GGTCGTCATTTCTTTTCTTAGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTCGGATATTTATGAATTTTTCCCGCCTATTATTTATGAATTCGTTCTGTTTGTCCTACTCACTCATCGGGAGGAGAACGAGAACTGACTGTTTTTGAACATAAAGTCAATGGAAGTTCCTTTATTGCGTTTGAAAAATTCAATTAAAAGTCTCTGACAAGTTATTTTTGTGATTATTCACTGTAATACTCTTGTTTTATGTCGGTTGAAAAAGTGTAATGAGAAATCTAAGAAAAGAAATGACGACC</canonical_amplicon>
		<polymorphic_amplicon>TGTCGGATATTTATGAATTTTTCCCGCCTATTATTTATGAATTCGTTCTGTTWGTCCTACTCACTCATCGGGAGGAGAACGAGAACTGACTGTTTTTGAACATAAAGTCAATGGAAGTTCCTTTATTGCGTTTGAAAAATTCAATTAAAAGTCTCTGACAAGTTATTTTTGTGATTATTCACTGTAATACTCTTGTTTTATGTCGGTTGAAAAAGTGTAATGAGAAATCTAAGAAAAGAAATGACGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31383</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>25092</contig_pos>
        <strand>+</strand>
        <context>ACTCATCGGG[A/T]GGAGAACGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCCGCCTATTATTTATGAATTCGTTCTGTTTGTCCTACTCACTCATCGGG</left_flank>
        <right_flank>GGAGAACGAGAACTGACTGTTTTTGAACATAAAGTCAATGGAAGTTCCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTGGCACAAAAAAAAGTTTTGCCCCTTTCTTTCCAACGGCCTTCATAGCCGCTTTGTTCTGCGTGATAACGCATTAAACGGAGTTTTTTTTTAAGTTCACGCACCACTGGGTCAAGTCGGCTGGTGTGCATTAAAAGAAAGGAAAAATGGTGGGAGTAGGAGGAGAAAGAGACCACTACTTTACATTAATTGTTTTCTGTTGGTTTTTCGTCATCTTTCATCTTTTAGACTGTTTGGCTTTAATAATTGAAAAGTTACTCAAATGAATACTTCACTATTCCATATTCCCGAATAATATGTATGTTATTTCAGGTGATTTGCGTTTCAAAATTGTACAATCTTTGTTGATTTTGTATTATTCAACTTCTGCTATTCTAAATTGTTCAGCCGGTGTCTTTGGAAACCTTTCAGACAACTAGCATTTTTTGTCGGATATTTATGAATTTTTCCCGCCTATTATTTATGAATTCGTTCTGTTTGTCCTACTCACTCATCGGGAGGAGAACGAGAACTGACTGTTTTTGAACATAAAGTCAATGGAAGTTCCTTTATTGCGTTTGAAAAATTCAATTAAAAGTCTCTGACAAGTTATTTTTGTGATTATTCACTGTAATACTCTTGTTTTATGTCGGTTGAAAAAGTGTAATGAGAAATCTAAGAAAAGAAATGACGACCACTCAAGGATCCGATTTCTTACTCGACGCATCCTAATGAGCTTAAGCACACGTTCTTGTATATATCTTTTGTCAAGCTTTTCTCTATTTATTCTTATATTATTTGAATTAGAACAGTTCTTAATTCTAAGTAAAAGTTGTGACTGAATTGCCTTCTGCTCATCAGTATTGTTTTATTATCTTATTAGATGAACTTGAAACGTTTTACAGTTATGAATTTTTTCTGTAATGGAACTGCAGAAAATTGATAAGATTTCGAAACGGCGATCAAAGAAACATCAACTTCAGAGAAAATATTGATTATAATATCAGTGATCGATCTTTA</canonical>
            <polymorphic>GTTGGCACAAAAAAAAGTTTTGCCCCTTTCTTTCCAACGGCCTTCATAGCCGCTTTGTTCTGCGTGATAACGCATTAAACGGAGTTTTTTTTTAAGTTCACGCACCACTGGGTCAAGTCGGCTGGTGTGCATTAAAAGAAAGGAAAAATGGTGGGAGTAGGAGGAGAAAGAGACCACTACTTTACATTAATTGTTTTCTGTTGGTTTTTCGTCATCTTTCATCTTTTAGACTGTTTGGCTTTAATAATTGAAAAGTTACTCAAATGAATACTTCACTATTCCATATTCCCGAATAATATGTATGTTATTTCAGGTGATTTGCGTTTCAAAATTGTACAATCTTTGTTGATTTTGTATTATTCAACTTCTGCTATTCTAAATTGTTCAGCCGGTGTCTTTGGAAACCTTTCAGACAACTAGCATTTTTTGTCGGATATTTATGAATTTTTCCCGCCTATTATTTATGAATTCGTTCTGTTTGTCCTACTCACTCATCGGGWGGAGAACGAGAACTGACTGTTTTTGAACATAAAGTCAATGGAAGTTCCTTTATTGCGTTTGAAAAATTCAATTAAAAGTCTCTGACAAGTTATTTTTGTGATTATTCACTGTAATACTCTTGTTTTATGTCGGTTGAAAAAGTGTAATGAGAAATCTAAGAAAAGAAATGACGACCACTCAAGGATCCGATTTCTTACTCGACGCATCCTAATGAGCTTAAGCACACGTTCTTGTATATATCTTTTGTCAAGCTTTTCTCTATTTATTCTTATATTATTTGAATTAGAACAGTTCTTAATTCTAAGTAAAAGTTGTGACTGAATTGCCTTCTGCTCATCAGTATTGTTTTATTATCTTATTAGATGAACTTGAAACGTTTTACAGTTATGAATTTTTTCTGTAATGGAACTGCAGAAAATTGATAAGATTTCGAAACGGCGATCAAAGAAACATCAACTTCAGAGAAAATATTGATTATAATATCAGTGATCGATCTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>504 288 208</canonical_bands>
                <polymorphic_bands>712 288</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTCGGATATTTATGAATTTTTC</pcr_primer_p1>
		<pcr_primer_p2>GGTCGTCATTTCTTTTCTTAGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTCGGATATTTATGAATTTTTCCCGCCTATTATTTATGAATTCGTTCTGTTTGTCCTACTCACTCATCGGGAGGAGAACGAGAACTGACTGTTTTTGAACATAAAGTCAATGGAAGTTCCTTTATTGCGTTTGAAAAATTCAATTAAAAGTCTCTGACAAGTTATTTTTGTGATTATTCACTGTAATACTCTTGTTTTATGTCGGTTGAAAAAGTGTAATGAGAAATCTAAGAAAAGAAATGACGACC</canonical_amplicon>
		<polymorphic_amplicon>TGTCGGATATTTATGAATTTTTCCCGCCTATTATTTATGAATTCGTTCTGTTTGTCCTACTCACTCATCGGGWGGAGAACGAGAACTGACTGTTTTTGAACATAAAGTCAATGGAAGTTCCTTTATTGCGTTTGAAAAATTCAATTAAAAGTCTCTGACAAGTTATTTTTGTGATTATTCACTGTAATACTCTTGTTTTATGTCGGTTGAAAAAGTGTAATGAGAAATCTAAGAAAAGAAATGACGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31384</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>52833</contig_pos>
        <strand>+</strand>
        <context>ATCGCTTTAG[C/T]TGTCGTAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGCCTTGTCATTTCATTTGAAAATAAACACAAAATCTCGCATCGCTTTAG</left_flank>
        <right_flank>TGTCGTAGTTTGGGATGTTCTTATGACAAAAATGAATTTTACGCCTATGT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGACTCCTTTTACGTCAGTTTTCAATCAAACAGTAAAGTTTAGTGTGATACTGTGAAAATTAAGAATATGAACTGATCGTGTTTCACTCGAACTGCGAAATTCATTTTCAACAGCAATTTGTTGCTATTCAAATTAGACAGTTATTTCCAATCAGTTGTCTATGACACAACTATTTATTGTTCAATTTCAGATGCCTTCAAATTTTTTTCCGTGTAGCGTATTTCAGCGGTTTTTCACAGGTCATTATGACATATGTGAGCCATGAGGGAAAAAAGGAAAAAACACAAAAACGATTTCAAAGCAATATTTTTTAAAATTTGGTACATGATAATGGATTCATTGGAACTAAATATTATTGATTACTGCAAATAACATGTTCGAATTTGTGTTTTACAATTTTACAGAAATTTTTTTTATTTCTCAGTGAGTTAATTCATTCTTTGATGGCGCCTTGTCATTTCATTTGAAAATAAACACAAAATCTCGCATCGCTTTAGTTGTCGTAGTTTGGGATGTTCTTATGACAAAAATGAATTTTACGCCTATGTTATAGAAAACTGACCGCATTCCATTTGACAGTTCAATAGAGATAATGCAAATTGAGTCGAAAATTTCTGATAACCTTCACAAGATGTTATGCATGAGAACCATTTTGCAAAATGGTTTCAAGGTTCAGGGAACACTTCAGTAATACCTGTTTTCAATCAACTGGAACTCCATTTCATTATTATGTTACAAATGGTTCCTGTTTGAAACCAGAAAACAGACATCTTCATGTCTTCAAGAACACCATTAGAAAAATTCAATGGGTTGTTTCAATGCAGTTTCGATTAGAACTCTATCCCTTTCATGCGGATGTCGATGTAAATTTAGTTTACTACTTTTAAAATGCTTTCGAAAGTATTTTGAACAATTAGAGGTAAGAAACTATTGAAATTTCACCAACGATCAATTTTCAAAAAGTGATTAATGAGGTTTTTTTTTGTTTTTTAATGTGC</canonical>
            <polymorphic>ATGACTCCTTTTACGTCAGTTTTCAATCAAACAGTAAAGTTTAGTGTGATACTGTGAAAATTAAGAATATGAACTGATCGTGTTTCACTCGAACTGCGAAATTCATTTTCAACAGCAATTTGTTGCTATTCAAATTAGACAGTTATTTCCAATCAGTTGTCTATGACACAACTATTTATTGTTCAATTTCAGATGCCTTCAAATTTTTTTCCGTGTAGCGTATTTCAGCGGTTTTTCACAGGTCATTATGACATATGTGAGCCATGAGGGAAAAAAGGAAAAAACACAAAAACGATTTCAAAGCAATATTTTTTAAAATTTGGTACATGATAATGGATTCATTGGAACTAAATATTATTGATTACTGCAAATAACATGTTCGAATTTGTGTTTTACAATTTTACAGAAATTTTTTTTATTTCTCAGTGAGTTAATTCATTCTTTGATGGCGCCTTGTCATTTCATTTGAAAATAAACACAAAATCTCGCATCGCTTTAGYTGTCGTAGTTTGGGATGTTCTTATGACAAAAATGAATTTTACGCCTATGTTATAGAAAACTGACCGCATTCCATTTGACAGTTCAATAGAGATAATGCAAATTGAGTCGAAAATTTCTGATAACCTTCACAAGATGTTATGCATGAGAACCATTTTGCAAAATGGTTTCAAGGTTCAGGGAACACTTCAGTAATACCTGTTTTCAATCAACTGGAACTCCATTTCATTATTATGTTACAAATGGTTCCTGTTTGAAACCAGAAAACAGACATCTTCATGTCTTCAAGAACACCATTAGAAAAATTCAATGGGTTGTTTCAATGCAGTTTCGATTAGAACTCTATCCCTTTCATGCGGATGTCGATGTAAATTTAGTTTACTACTTTTAAAATGCTTTCGAAAGTATTTTGAACAATTAGAGGTAAGAAACTATTGAAATTTCACCAACGATCAATTTTCAAAAAGTGATTAATGAGGTTTTTTTTTGTTTTTTAATGTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATGTTCGAATTTGTGTTTTAC</pcr_primer_p1>
		<pcr_primer_p2>TTATCAGAAATTTTCGACTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATGTTCGAATTTGTGTTTTACAATTTTACAGAAATTTTTTTTATTTCTCAGTGAGTTAATTCATTCTTTGATGGCGCCTTGTCATTTCATTTGAAAATAAACACAAAATCTCGCATCGCTTTAGTTGTCGTAGTTTGGGATGTTCTTATGACAAAAATGAATTTTACGCCTATGTTATAGAAAACTGACCGCATTCCATTTGACAGTTCAATAGAGATAATGCAAATTGAGTCGAAAATTTCTGATAA</canonical_amplicon>
		<polymorphic_amplicon>ACATGTTCGAATTTGTGTTTTACAATTTTACAGAAATTTTTTTTATTTCTCAGTGAGTTAATTCATTCTTTGATGGCGCCTTGTCATTTCATTTGAAAATAAACACAAAATCTCGCATCGCTTTAGYTGTCGTAGTTTGGGATGTTCTTATGACAAAAATGAATTTTACGCCTATGTTATAGAAAACTGACCGCATTCCATTTGACAGTTCAATAGAGATAATGCAAATTGAGTCGAAAATTTCTGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31385</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>224375</contig_pos>
        <strand></strand>
        <context>AATGAAATCA[T/C]TCACTATCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGTTGATCAATTGATAGTAATTTATATAAAGAATCTCCGTAATGAAATCA</left_flank>
        <right_flank>TCACTATCGAAAATTGATGGAGAATGCGGAGCATTTGCGTACAACAACTA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAGATTCACGCACGACCAGAAAAACATGGGAGGATTGGTATCATAAGAAAATCGTTGAAATCAAAAAGAGCTCTGAAGCATTCAGCTTGAATCAGAATCATGCAAGAGTGAATGATGCTTTATCTTTAAAGACAATTCTTCTTTTTGCTTGCAGGAAGAAATCTTACGAATCCGGTCAATTGTAAACGAGTTTCGTGGAAAGTTTTCGGATGCAGAGACACTGGTTTAACTAGGTTATAAAAACTTTTTCTTGATAACGTTCTTGCAGAATCAACAACTACTGAAGAGAATTGACGATCTGCACTACCAGGACAAGGAAAACCTCCGAATGTTCGAGTTTGCACTCACCGAGAAAGAAAATTCTGTCATCAAAATGAGAGAAGAATGCACCAAACTTTCCGTGGAGCTCGACAAACTTGTAGAAAATCAAATTGTAAGTGAAACGTGTGTTGATCAATTGATAGTAATTTATATAAAGAATCTCCGTAATGAAATCATTCACTATCGAAAATTGATGGAGAATGCGGAGCATTTGCGTACAACAACTACAAGCCATGTCGTGATTGAAACTCCAGCATCTGGTCTTCGAACAACTTCTTATCATGCCTACGGCTCAGCTTATGCCGATGCCAACACTGAAATGCATATTGCGCCTTGAAAATGATTCATTGTGAAATATTTATCCCACTTTTTAATTGATTCCTGATTCATTATATATTTCAAAAAAGAGATTTTTTCCTACGTTCAAACTATTAGATTTCAAGACATTGACTTGAAGTTTAGTTGTTTGAAGGACTTGTTTCCTTTTTTAATTTAAAATAACTAATTTTTTCAGTTTTACTAAACAAATAATTACTTCAATGAAATAATTCTATTGTACTATGCATATTTGCCTATAATGGAGCATTAGAATGTGCTGATAAACCCACACGTGGTTGGTCCATTTGTTTGACCACACTACGCTAGGCGCTTTGTTTCCGTGTTTCAGATTACAGTTG</canonical>
            <polymorphic>GAAAGATTCACGCACGACCAGAAAAACATGGGAGGATTGGTATCATAAGAAAATCGTTGAAATCAAAAAGAGCTCTGAAGCATTCAGCTTGAATCAGAATCATGCAAGAGTGAATGATGCTTTATCTTTAAAGACAATTCTTCTTTTTGCTTGCAGGAAGAAATCTTACGAATCCGGTCAATTGTAAACGAGTTTCGTGGAAAGTTTTCGGATGCAGAGACACTGGTTTAACTAGGTTATAAAAACTTTTTCTTGATAACGTTCTTGCAGAATCAACAACTACTGAAGAGAATTGACGATCTGCACTACCAGGACAAGGAAAACCTCCGAATGTTCGAGTTTGCACTCACCGAGAAAGAAAATTCTGTCATCAAAATGAGAGAAGAATGCACCAAACTTTCCGTGGAGCTCGACAAACTTGTAGAAAATCAAATTGTAAGTGAAACGTGTGTTGATCAATTGATAGTAATTTATATAAAGAATCTCCGTAATGAAATCAYTCACTATCGAAAATTGATGGAGAATGCGGAGCATTTGCGTACAACAACTACAAGCCATGTCGTGATTGAAACTCCAGCATCTGGTCTTCGAACAACTTCTTATCATGCCTACGGCTCAGCTTATGCCGATGCCAACACTGAAATGCATATTGCGCCTTGAAAATGATTCATTGTGAAATATTTATCCCACTTTTTAATTGATTCCTGATTCATTATATATTTCAAAAAAGAGATTTTTTCCTACGTTCAAACTATTAGATTTCAAGACATTGACTTGAAGTTTAGTTGTTTGAAGGACTTGTTTCCTTTTTTAATTTAAAATAACTAATTTTTTCAGTTTTACTAAACAAATAATTACTTCAATGAAATAATTCTATTGTACTATGCATATTTGCCTATAATGGAGCATTAGAATGTGCTGATAAACCCACACGTGGTTGGTCCATTTGTTTGACCACACTACGCTAGGCGCTTTGTTTCCGTGTTTCAGATTACAGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>293 275 204 131 97</canonical_bands>
                <polymorphic_bands>390 275 204 131</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTCATCAAAATGAGAGAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>GTAGGCATGATAAGAAGTTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGTCATCAAAATGAGAGAAGAATGCACCAAACTTTCCGTGGAGCTCGACAAACTTGTAGAAAATCAAATTGTAAGTGAAACGTGTGTTGATCAATTGATAGTAATTTATATAAAGAATCTCCGTAATGAAATCATTCACTATCGAAAATTGATGGAGAATGCGGAGCATTTGCGTACAACAACTACAAGCCATGTCGTGATTGAAACTCCAGCATCTGGTCTTCGAACAACTTCTTATCATGCCTAC</canonical_amplicon>
		<polymorphic_amplicon>TGTCATCAAAATGAGAGAAGAATGCACCAAACTTTCCGTGGAGCTCGACAAACTTGTAGAAAATCAAATTGTAAGTGAAACGTGTGTTGATCAATTGATAGTAATTTATATAAAGAATCTCCGTAATGAAATCAYTCACTATCGAAAATTGATGGAGAATGCGGAGCATTTGCGTACAACAACTACAAGCCATGTCGTGATTGAAACTCCAGCATCTGGTCTTCGAACAACTTCTTATCATGCCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31386</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>224422</contig_pos>
        <strand></strand>
        <context>GCGTACAACA[A/G]CTACAAGCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATTCACTATCGAAAATTGATGGAGAATGCGGAGCATTTGCGTACAACA</left_flank>
        <right_flank>CTACAAGCCATGTCGTGATTGAAACTCCAGCATCTGGTCTTCGAACAACT</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAAATCGTTGAAATCAAAAAGAGCTCTGAAGCATTCAGCTTGAATCAGAATCATGCAAGAGTGAATGATGCTTTATCTTTAAAGACAATTCTTCTTTTTGCTTGCAGGAAGAAATCTTACGAATCCGGTCAATTGTAAACGAGTTTCGTGGAAAGTTTTCGGATGCAGAGACACTGGTTTAACTAGGTTATAAAAACTTTTTCTTGATAACGTTCTTGCAGAATCAACAACTACTGAAGAGAATTGACGATCTGCACTACCAGGACAAGGAAAACCTCCGAATGTTCGAGTTTGCACTCACCGAGAAAGAAAATTCTGTCATCAAAATGAGAGAAGAATGCACCAAACTTTCCGTGGAGCTCGACAAACTTGTAGAAAATCAAATTGTAAGTGAAACGTGTGTTGATCAATTGATAGTAATTTATATAAAGAATCTCCGTAATGAAATCATTCACTATCGAAAATTGATGGAGAATGCGGAGCATTTGCGTACAACAACTACAAGCCATGTCGTGATTGAAACTCCAGCATCTGGTCTTCGAACAACTTCTTATCATGCCTACGGCTCAGCTTATGCCGATGCCAACACTGAAATGCATATTGCGCCTTGAAAATGATTCATTGTGAAATATTTATCCCACTTTTTAATTGATTCCTGATTCATTATATATTTCAAAAAAGAGATTTTTTCCTACGTTCAAACTATTAGATTTCAAGACATTGACTTGAAGTTTAGTTGTTTGAAGGACTTGTTTCCTTTTTTAATTTAAAATAACTAATTTTTTCAGTTTTACTAAACAAATAATTACTTCAATGAAATAATTCTATTGTACTATGCATATTTGCCTATAATGGAGCATTAGAATGTGCTGATAAACCCACACGTGGTTGGTCCATTTGTTTGACCACACTACGCTAGGCGCTTTGTTTCCGTGTTTCAGATTACAGTTGATATTTAATGTTGCGAAAAAGACAACTTCATTGGTTTTGTTTTCCAT</canonical>
            <polymorphic>AGAAAATCGTTGAAATCAAAAAGAGCTCTGAAGCATTCAGCTTGAATCAGAATCATGCAAGAGTGAATGATGCTTTATCTTTAAAGACAATTCTTCTTTTTGCTTGCAGGAAGAAATCTTACGAATCCGGTCAATTGTAAACGAGTTTCGTGGAAAGTTTTCGGATGCAGAGACACTGGTTTAACTAGGTTATAAAAACTTTTTCTTGATAACGTTCTTGCAGAATCAACAACTACTGAAGAGAATTGACGATCTGCACTACCAGGACAAGGAAAACCTCCGAATGTTCGAGTTTGCACTCACCGAGAAAGAAAATTCTGTCATCAAAATGAGAGAAGAATGCACCAAACTTTCCGTGGAGCTCGACAAACTTGTAGAAAATCAAATTGTAAGTGAAACGTGTGTTGATCAATTGATAGTAATTTATATAAAGAATCTCCGTAATGAAATCATTCACTATCGAAAATTGATGGAGAATGCGGAGCATTTGCGTACAACARCTACAAGCCATGTCGTGATTGAAACTCCAGCATCTGGTCTTCGAACAACTTCTTATCATGCCTACGGCTCAGCTTATGCCGATGCCAACACTGAAATGCATATTGCGCCTTGAAAATGATTCATTGTGAAATATTTATCCCACTTTTTAATTGATTCCTGATTCATTATATATTTCAAAAAAGAGATTTTTTCCTACGTTCAAACTATTAGATTTCAAGACATTGACTTGAAGTTTAGTTGTTTGAAGGACTTGTTTCCTTTTTTAATTTAAAATAACTAATTTTTTCAGTTTTACTAAACAAATAATTACTTCAATGAAATAATTCTATTGTACTATGCATATTTGCCTATAATGGAGCATTAGAATGTGCTGATAAACCCACACGTGGTTGGTCCATTTGTTTGACCACACTACGCTAGGCGCTTTGTTTCCGTGTTTCAGATTACAGTTGATATTTAATGTTGCGAAAAAGACAACTTCATTGGTTTTGTTTTCCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCATCAAAATGAGAGAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>GTAGGCATGATAAGAAGTTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGTCATCAAAATGAGAGAAGAATGCACCAAACTTTCCGTGGAGCTCGACAAACTTGTAGAAAATCAAATTGTAAGTGAAACGTGTGTTGATCAATTGATAGTAATTTATATAAAGAATCTCCGTAATGAAATCATTCACTATCGAAAATTGATGGAGAATGCGGAGCATTTGCGTACAACAACTACAAGCCATGTCGTGATTGAAACTCCAGCATCTGGTCTTCGAACAACTTCTTATCATGCCTAC</canonical_amplicon>
		<polymorphic_amplicon>TGTCATCAAAATGAGAGAAGAATGCACCAAACTTTCCGTGGAGCTCGACAAACTTGTAGAAAATCAAATTGTAAGTGAAACGTGTGTTGATCAATTGATAGTAATTTATATAAAGAATCTCCGTAATGAAATCATTCACTATCGAAAATTGATGGAGAATGCGGAGCATTTGCGTACAACARCTACAAGCCATGTCGTGATTGAAACTCCAGCATCTGGTCTTCGAACAACTTCTTATCATGCCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31387</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>277916</contig_pos>
        <strand></strand>
        <context>TTGGGTTTTT[C/T]GCTTCTATGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGTTTCATCTAAAAGTCCTCTGTTACTTCTCTAAATTTTTTGGGTTTTT</left_flank>
        <right_flank>GCTTCTATGTGTCACATTTTCTCCAACTGCTATTAAATTAGCTTTTTGTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGTGAGAATTTGATCACTGTAGGTCAAATGACGTTTCAGGCATTTTACGTGGGGGTATTTTCTAGTACCTGGGATGTACTTTCAAATTTTCAGTATTCGGGAGATAATGATAGAAACAGAAAACTTATTAACAACAGTAATTTTTCATCTCTGTAATCAATCAAAAACACCGTTGTTGTGAAATTTTTGATATTAAATACTATAAAAACTATGAGACTTGCATGTTATACCACAGTTCATACCTGATTGACCATGCTTTTGCTTTTTGAGTCATTCAACAAATTTTGAAAACTGTTTTGGAATCAGGGAGCATCCTTTTTTTCAGTGAAGCTACTGGTTTTTTCTATTGAGGTAGATGAGATGACATTTAAGAAGTTTCAATTACTCAAAGAAAGAGAAACAAACAATTTTTCTCTCAAATCAGTTCGGACAGTTTTGATTGATTTTGGGTTTCATCTAAAAGTCCTCTGTTACTTCTCTAAATTTTTTGGGTTTTTCGCTTCTATGTGTCACATTTTCTCCAACTGCTATTAAATTAGCTTTTTGTGTTTCCTTCAATCAATCAGATCAAGCAAGTGATGCGCGTTTAGTGCAAACTATTTTGACTTTCAGCTAGTGTAGTACTTTGAGAAAGGCATTGAATCTAAGCTATCCTCTTGTTATAGTTTTGCGTAGTGGAAATGAACGAAAAACGCGCAGTACTTTTCACCCAACCTATTAATATGAGAGTATCTATAATTCAACAAAAAAAACAAAAATGGAATTGTTTATTGTTATTTGCCAACCGGAAATTAAAGTTTCGCTTATTGATATTCTATTGCTGGAAACCAAAACGCGCTTTTTTGCAATCACGTCACTTTGATTGAAAAAAAACGTGTTTTTTTTTCAAACTCAATTGCTATCAAAACGAAAGTTTATTCTAATTGTAGTGTCGTTGTCGTGTCACCATGTCACTTTTTTCTTTTCGTCGACTTCCTTCGTTCCAATTGGAAATGTAA</canonical>
            <polymorphic>TATGTGAGAATTTGATCACTGTAGGTCAAATGACGTTTCAGGCATTTTACGTGGGGGTATTTTCTAGTACCTGGGATGTACTTTCAAATTTTCAGTATTCGGGAGATAATGATAGAAACAGAAAACTTATTAACAACAGTAATTTTTCATCTCTGTAATCAATCAAAAACACCGTTGTTGTGAAATTTTTGATATTAAATACTATAAAAACTATGAGACTTGCATGTTATACCACAGTTCATACCTGATTGACCATGCTTTTGCTTTTTGAGTCATTCAACAAATTTTGAAAACTGTTTTGGAATCAGGGAGCATCCTTTTTTTCAGTGAAGCTACTGGTTTTTTCTATTGAGGTAGATGAGATGACATTTAAGAAGTTTCAATTACTCAAAGAAAGAGAAACAAACAATTTTTCTCTCAAATCAGTTCGGACAGTTTTGATTGATTTTGGGTTTCATCTAAAAGTCCTCTGTTACTTCTCTAAATTTTTTGGGTTTTTYGCTTCTATGTGTCACATTTTCTCCAACTGCTATTAAATTAGCTTTTTGTGTTTCCTTCAATCAATCAGATCAAGCAAGTGATGCGCGTTTAGTGCAAACTATTTTGACTTTCAGCTAGTGTAGTACTTTGAGAAAGGCATTGAATCTAAGCTATCCTCTTGTTATAGTTTTGCGTAGTGGAAATGAACGAAAAACGCGCAGTACTTTTCACCCAACCTATTAATATGAGAGTATCTATAATTCAACAAAAAAAACAAAAATGGAATTGTTTATTGTTATTTGCCAACCGGAAATTAAAGTTTCGCTTATTGATATTCTATTGCTGGAAACCAAAACGCGCTTTTTTGCAATCACGTCACTTTGATTGAAAAAAAACGTGTTTTTTTTTCAAACTCAATTGCTATCAAAACGAAAGTTTATTCTAATTGTAGTGTCGTTGTCGTGTCACCATGTCACTTTTTTCTTTTCGTCGACTTCCTTCGTTCCAATTGGAAATGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAGAAAGAGAAACAAACAAT</pcr_primer_p1>
		<pcr_primer_p2>TGCCTTTCTCAAAGTACTACACT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCAAAGAAAGAGAAACAAACAATTTTTCTCTCAAATCAGTTCGGACAGTTTTGATTGATTTTGGGTTTCATCTAAAAGTCCTCTGTTACTTCTCTAAATTTTTTGGGTTTTTCGCTTCTATGTGTCACATTTTCTCCAACTGCTATTAAATTAGCTTTTTGTGTTTCCTTCAATCAATCAGATCAAGCAAGTGATGCGCGTTTAGTGCAAACTATTTTGACTTTCAGCTAGTGTAGTACTTTGAGAAAGGCA</canonical_amplicon>
		<polymorphic_amplicon>TCAAAGAAAGAGAAACAAACAATTTTTCTCTCAAATCAGTTCGGACAGTTTTGATTGATTTTGGGTTTCATCTAAAAGTCCTCTGTTACTTCTCTAAATTTTTTGGGTTTTTYGCTTCTATGTGTCACATTTTCTCCAACTGCTATTAAATTAGCTTTTTGTGTTTCCTTCAATCAATCAGATCAAGCAAGTGATGCGCGTTTAGTGCAAACTATTTTGACTTTCAGCTAGTGTAGTACTTTGAGAAAGGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31388</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>286119</contig_pos>
        <strand>+</strand>
        <context>CAATGCTAGC[A/G]ACGAATAACC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGACGTAACCCCTAATTGAGTTGAACATTTTATTTGCTTCAATGCTAGC</left_flank>
        <right_flank>ACGAATAACCGCTTCACTGCGCGTTTGCTACTAAATTTTGTTAGATCGTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCCTAAACTGATATCGCAGCTTTAAACTGTATTCCATTAATTTATCCATCTAAAATGGGCTCCATTAATACAATTTTTCATCGGATACACCGATTTGTCAACGGCGGAAACAATGTGGTGAGCATCTCGAGCTAAAATATTCATGCGAGTCAATACTTACTTCCAGCGCTTCGTTCCAAACACAACTCCCGCGCCTGAGACATTGACGTTAAATCCAAGAGCAATGCCGAGCATTGTTTCTGTAAGTTTTTTGTTTTTGCTTTCTATTTCCAGTTTCCGGTTTTTTCTTCTATGGGAAGCTGGCGATGAGGCCACATTTTCCATTTGTTCCAGCGCTGTGACAAATTTCCCTCATTTTAGCTATTCGAAATCCCGCCAGCTTTGGAAATGCCTGGTTTTGGCTGTGAAGAGGTATTACGAGTTTTCTAAATCCCACAATTTTGTTTTTTGACGTAACCCCTAATTGAGTTGAACATTTTATTTGCTTCAATGCTAGCGACGAATAACCGCTTCACTGCGCGTTTGCTACTAAATTTTGTTAGATCGTAAAAAATGTGAGCAAACGATTTGCAGGACCGAAGGTTTCTTCTCAAAGCATGTAAATTTATGGATCAAGTGGTAAAAAGTTGTCATAGCCCAAGATTAAACTTGAAAAACTCGCCGCCTTTTATTCTGGATATATTGCCGGACACCTATACGCATGTGAGTTGTATTTATGAAATTCACTAGTTTTAAATTTTATTTTCAGTTAATGCTAATCTTCACCCACAACAATGACATACTCCAAGACAACGAGTATCTGAGACTGTTCCTGGAAAGTTTGATCAACAAATGCAAAGAAATTATCAAGCTATTCAAAACATCGGGAATATACAATGACCAATCTGATGAACGAAGGAAATTGACGAAGATGTCGCTTACGTTTTCTCATATGCTCTTCGAAATAAAAGCTCTGTTTCCGGAAGGTCAATACATTGAAGACCGGTTTCGTATGACTA</canonical>
            <polymorphic>CATCCTAAACTGATATCGCAGCTTTAAACTGTATTCCATTAATTTATCCATCTAAAATGGGCTCCATTAATACAATTTTTCATCGGATACACCGATTTGTCAACGGCGGAAACAATGTGGTGAGCATCTCGAGCTAAAATATTCATGCGAGTCAATACTTACTTCCAGCGCTTCGTTCCAAACACAACTCCCGCGCCTGAGACATTGACGTTAAATCCAAGAGCAATGCCGAGCATTGTTTCTGTAAGTTTTTTGTTTTTGCTTTCTATTTCCAGTTTCCGGTTTTTTCTTCTATGGGAAGCTGGCGATGAGGCCACATTTTCCATTTGTTCCAGCGCTGTGACAAATTTCCCTCATTTTAGCTATTCGAAATCCCGCCAGCTTTGGAAATGCCTGGTTTTGGCTGTGAAGAGGTATTACGAGTTTTCTAAATCCCACAATTTTGTTTTTTGACGTAACCCCTAATTGAGTTGAACATTTTATTTGCTTCAATGCTAGCRACGAATAACCGCTTCACTGCGCGTTTGCTACTAAATTTTGTTAGATCGTAAAAAATGTGAGCAAACGATTTGCAGGACCGAAGGTTTCTTCTCAAAGCATGTAAATTTATGGATCAAGTGGTAAAAAGTTGTCATAGCCCAAGATTAAACTTGAAAAACTCGCCGCCTTTTATTCTGGATATATTGCCGGACACCTATACGCATGTGAGTTGTATTTATGAAATTCACTAGTTTTAAATTTTATTTTCAGTTAATGCTAATCTTCACCCACAACAATGACATACTCCAAGACAACGAGTATCTGAGACTGTTCCTGGAAAGTTTGATCAACAAATGCAAAGAAATTATCAAGCTATTCAAAACATCGGGAATATACAATGACCAATCTGATGAACGAAGGAAATTGACGAAGATGTCGCTTACGTTTTCTCATATGCTCTTCGAAATAAAAGCTCTGTTTCCGGAAGGTCAATACATTGAAGACCGGTTTCGTATGACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGAAGAGGTATTACGAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>AGTTTAATCTTGGGCTATGACA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGTGAAGAGGTATTACGAGTTTTCTAAATCCCACAATTTTGTTTTTTGACGTAACCCCTAATTGAGTTGAACATTTTATTTGCTTCAATGCTAGCGACGAATAACCGCTTCACTGCGCGTTTGCTACTAAATTTTGTTAGATCGTAAAAAATGTGAGCAAACGATTTGCAGGACCGAAGGTTTCTTCTCAAAGCATGTAAATTTATGGATCAAGTGGTAAAAAGTTGTCATAGCCCAAGATTAAACT</canonical_amplicon>
		<polymorphic_amplicon>TGTGAAGAGGTATTACGAGTTTTCTAAATCCCACAATTTTGTTTTTTGACGTAACCCCTAATTGAGTTGAACATTTTATTTGCTTCAATGCTAGCRACGAATAACCGCTTCACTGCGCGTTTGCTACTAAATTTTGTTAGATCGTAAAAAATGTGAGCAAACGATTTGCAGGACCGAAGGTTTCTTCTCAAAGCATGTAAATTTATGGATCAAGTGGTAAAAAGTTGTCATAGCCCAAGATTAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31389</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>286428</contig_pos>
        <strand>+</strand>
        <context>TATCTGAGAC[A/T]GTTCCTGGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATCTTCACCCACAACAATGACATACTCCAAGACAACGAGTATCTGAGAC</left_flank>
        <right_flank>GTTCCTGGAAAGTTTGATCAACAAATGCAAAGAAATTATCAAGCTATTCA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGCCACATTTTCCATTTGTTCCAGCGCTGTGACAAATTTCCCTCATTTTAGCTATTCGAAATCCCGCCAGCTTTGGAAATGCCTGGTTTTGGCTGTGAAGAGGTATTACGAGTTTTCTAAATCCCACAATTTTGTTTTTTGACGTAACCCCTAATTGAGTTGAACATTTTATTTGCTTCAATGCTAGCGACGAATAACCGCTTCACTGCGCGTTTGCTACTAAATTTTGTTAGATCGTAAAAAATGTGAGCAAACGATTTGCAGGACCGAAGGTTTCTTCTCAAAGCATGTAAATTTATGGATCAAGTGGTAAAAAGTTGTCATAGCCCAAGATTAAACTTGAAAAACTCGCCGCCTTTTATTCTGGATATATTGCCGGACACCTATACGCATGTGAGTTGTATTTATGAAATTCACTAGTTTTAAATTTTATTTTCAGTTAATGCTAATCTTCACCCACAACAATGACATACTCCAAGACAACGAGTATCTGAGACTGTTCCTGGAAAGTTTGATCAACAAATGCAAAGAAATTATCAAGCTATTCAAAACATCGGGAATATACAATGACCAATCTGATGAACGAAGGAAATTGACGAAGATGTCGCTTACGTTTTCTCATATGCTCTTCGAAATAAAAGCTCTGTTTCCGGAAGGTCAATACATTGAAGACCGGTTTCGTATGACTAAGAAAGAGGCCGACTGTTTTTGGAGTCAGCATTTTTTGAAAAAGTGAGTAACAAATCAAGGTGGCACAAAAACCAGATGAACATTTGTCTCTGTTCGATTATAGCGGGACCATGCCCGAATGGACGGGATCATGCCGGAATGAACGGGACCATGCCCGAATAAGCGGGATCAGGGCCGAACGAACAGGAAACTTGTTTTTTTAATAGAGTGAGGGGGAAACTATTAAAATTGTTTTAATTTTTCAATTTTTTAAAGTATTGTCGTTTCTTTATTGCTGTCAGACTTGTACAAATTAAAAGCCACTAATT</canonical>
            <polymorphic>GAGGCCACATTTTCCATTTGTTCCAGCGCTGTGACAAATTTCCCTCATTTTAGCTATTCGAAATCCCGCCAGCTTTGGAAATGCCTGGTTTTGGCTGTGAAGAGGTATTACGAGTTTTCTAAATCCCACAATTTTGTTTTTTGACGTAACCCCTAATTGAGTTGAACATTTTATTTGCTTCAATGCTAGCGACGAATAACCGCTTCACTGCGCGTTTGCTACTAAATTTTGTTAGATCGTAAAAAATGTGAGCAAACGATTTGCAGGACCGAAGGTTTCTTCTCAAAGCATGTAAATTTATGGATCAAGTGGTAAAAAGTTGTCATAGCCCAAGATTAAACTTGAAAAACTCGCCGCCTTTTATTCTGGATATATTGCCGGACACCTATACGCATGTGAGTTGTATTTATGAAATTCACTAGTTTTAAATTTTATTTTCAGTTAATGCTAATCTTCACCCACAACAATGACATACTCCAAGACAACGAGTATCTGAGACWGTTCCTGGAAAGTTTGATCAACAAATGCAAAGAAATTATCAAGCTATTCAAAACATCGGGAATATACAATGACCAATCTGATGAACGAAGGAAATTGACGAAGATGTCGCTTACGTTTTCTCATATGCTCTTCGAAATAAAAGCTCTGTTTCCGGAAGGTCAATACATTGAAGACCGGTTTCGTATGACTAAGAAAGAGGCCGACTGTTTTTGGAGTCAGCATTTTTTGAAAAAGTGAGTAACAAATCAAGGTGGCACAAAAACCAGATGAACATTTGTCTCTGTTCGATTATAGCGGGACCATGCCCGAATGGACGGGATCATGCCGGAATGAACGGGACCATGCCCGAATAAGCGGGATCAGGGCCGAACGAACAGGAAACTTGTTTTTTTAATAGAGTGAGGGGGAAACTATTAAAATTGTTTTAATTTTTCAATTTTTTAAAGTATTGTCGTTTCTTTATTGCTGTCAGACTTGTACAAATTAAAAGCCACTAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTATACGCATGTGAGTTGTAT</pcr_primer_p1>
		<pcr_primer_p2>GAAGAGCATATGAGAAAACGTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCTATACGCATGTGAGTTGTATTTATGAAATTCACTAGTTTTAAATTTTATTTTCAGTTAATGCTAATCTTCACCCACAACAATGACATACTCCAAGACAACGAGTATCTGAGACTGTTCCTGGAAAGTTTGATCAACAAATGCAAAGAAATTATCAAGCTATTCAAAACATCGGGAATATACAATGACCAATCTGATGAACGAAGGAAATTGACGAAGATGTCGCTTACGTTTTCTCATATGCTCTTC</canonical_amplicon>
		<polymorphic_amplicon>ACCTATACGCATGTGAGTTGTATTTATGAAATTCACTAGTTTTAAATTTTATTTTCAGTTAATGCTAATCTTCACCCACAACAATGACATACTCCAAGACAACGAGTATCTGAGACWGTTCCTGGAAAGTTTGATCAACAAATGCAAAGAAATTATCAAGCTATTCAAAACATCGGGAATATACAATGACCAATCTGATGAACGAAGGAAATTGACGAAGATGTCGCTTACGTTTTCTCATATGCTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31390</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>294632</contig_pos>
        <strand>+</strand>
        <context>ATTTCTGGAC[G/T]GAAGAATCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATCCTGCTCCATTTTTAAAATAATTTGTAATTGTGTGAACATTTCTGGAC</left_flank>
        <right_flank>GAAGAATCAAATGCTAAAATGTTTAAAAAATAGCTTGGCAGAATAACCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGGTGTGTTTCCATGTGAGCCCGACCACAAATTCACATAAAAATCCAATTTTCAATGTATAGGGCACAAGGTCTTTCCTTCTTTTCCTTTACAGCGACGTTGGTTCAGAATTTGTGCAATTAATATTCTCAAATTCTCATTCATAAACTTCTAATTTTGTTGAAATGCAAAGGTTTGCAGACTTTTAAAGAGTTTTTTCTAATTTGAGCAGAAAACTTGAAGAATCTCCCAAGTCAAACGATTCTTCTTTGTTCCAGTTTATCCTTACTTGGTTCGGTACGTGTGAGTAGTTTGTTTAAAAGGCGAGAAGCGGAAAGCTCATTCATCCTCATTCTCAAGTACCGGCAGGTTTTATTTCTAACACACACTGCCCTTGTCCCACTTTTTGCGTGTTCTTGAAAATCTCATCATTCTTCTCTAAAGTTTTTCAAAAAGAGAAATAGGTATATCCTGCTCCATTTTTAAAATAATTTGTAATTGTGTGAACATTTCTGGACGGAAGAATCAAATGCTAAAATGTTTAAAAAATAGCTTGGCAGAATAACCTTGTTAGTAGTGTTTTAGATAAATAAGTATTTAATTACACAAAAGTCAACGAAGTAGCAAACATTCACTCAATTCCGCTCAAATCTTGTTTTGATTGATATGTATCCAGGTTAGAATAGAGAGGAGAAAAGTTGAATAAGGAAACAGTGTATCAAATAGATTGACAAGATAAACATTATAGAACGTCATCAAAAATTGTCAAGTGTCTTTTTTCGGTTATATTCACAGGATGCAAAACCGATTTTAAAAAAGATAAATGCACTTCAATTCACTTTTTCTGTTATCAGATTCCCCTTTTTCAACTTTTTTCAAATGTAGGAATCGAGTTTCTTGCTTTTCACAAATTTCAAGCTGGAAAGTGTCGATAAAACGTTTTTAGAAATGCCAAGAATGAATTACGATTTTACCAACTTGGTACCATCTAAATTATGATTAGTAAGAAGAAAATGTTT</canonical>
            <polymorphic>ATCGGTGTGTTTCCATGTGAGCCCGACCACAAATTCACATAAAAATCCAATTTTCAATGTATAGGGCACAAGGTCTTTCCTTCTTTTCCTTTACAGCGACGTTGGTTCAGAATTTGTGCAATTAATATTCTCAAATTCTCATTCATAAACTTCTAATTTTGTTGAAATGCAAAGGTTTGCAGACTTTTAAAGAGTTTTTTCTAATTTGAGCAGAAAACTTGAAGAATCTCCCAAGTCAAACGATTCTTCTTTGTTCCAGTTTATCCTTACTTGGTTCGGTACGTGTGAGTAGTTTGTTTAAAAGGCGAGAAGCGGAAAGCTCATTCATCCTCATTCTCAAGTACCGGCAGGTTTTATTTCTAACACACACTGCCCTTGTCCCACTTTTTGCGTGTTCTTGAAAATCTCATCATTCTTCTCTAAAGTTTTTCAAAAAGAGAAATAGGTATATCCTGCTCCATTTTTAAAATAATTTGTAATTGTGTGAACATTTCTGGACKGAAGAATCAAATGCTAAAATGTTTAAAAAATAGCTTGGCAGAATAACCTTGTTAGTAGTGTTTTAGATAAATAAGTATTTAATTACACAAAAGTCAACGAAGTAGCAAACATTCACTCAATTCCGCTCAAATCTTGTTTTGATTGATATGTATCCAGGTTAGAATAGAGAGGAGAAAAGTTGAATAAGGAAACAGTGTATCAAATAGATTGACAAGATAAACATTATAGAACGTCATCAAAAATTGTCAAGTGTCTTTTTTCGGTTATATTCACAGGATGCAAAACCGATTTTAAAAAAGATAAATGCACTTCAATTCACTTTTTCTGTTATCAGATTCCCCTTTTTCAACTTTTTTCAAATGTAGGAATCGAGTTTCTTGCTTTTCACAAATTTCAAGCTGGAAAGTGTCGATAAAACGTTTTTAGAAATGCCAAGAATGAATTACGATTTTACCAACTTGGTACCATCTAAATTATGATTAGTAAGAAGAAAATGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAGGTATATCCTGCTCCATTT</pcr_primer_p1>
		<pcr_primer_p2>TCCTTATTCAACTTTTCTCCTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATAGGTATATCCTGCTCCATTTTTAAAATAATTTGTAATTGTGTGAACATTTCTGGACGGAAGAATCAAATGCTAAAATGTTTAAAAAATAGCTTGGCAGAATAACCTTGTTAGTAGTGTTTTAGATAAATAAGTATTTAATTACACAAAAGTCAACGAAGTAGCAAACATTCACTCAATTCCGCTCAAATCTTGTTTTGATTGATATGTATCCAGGTTAGAATAGAGAGGAGAAAAGTTGAATAAGGA</canonical_amplicon>
		<polymorphic_amplicon>AATAGGTATATCCTGCTCCATTTTTAAAATAATTTGTAATTGTGTGAACATTTCTGGACKGAAGAATCAAATGCTAAAATGTTTAAAAAATAGCTTGGCAGAATAACCTTGTTAGTAGTGTTTTAGATAAATAAGTATTTAATTACACAAAAGTCAACGAAGTAGCAAACATTCACTCAATTCCGCTCAAATCTTGTTTTGATTGATATGTATCCAGGTTAGAATAGAGAGGAGAAAAGTTGAATAAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31391</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>312015</contig_pos>
        <strand></strand>
        <context>TTCCTTATAT[A/G]ACCATCAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAGTGTGTCGGCGCCAAAAGTCTGCGAGAAAGAAGGAGATTCCTTATAT</left_flank>
        <right_flank>ACCATCAAATAAGAAACGAGCAATAAGAAATGGAAAATTTCTACTCGAGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGTGCCGTTTTGTTTGGTAAGTTGTGTGATCCACCCCGCGCTGCACTTTCTGTGAACACTTTTTGGCTGCTTCTGACTGCCTGCCTACCTCTCCTCTTTTCAACCTACTTATTTACCTATAGCTAATAAGCAACTTCTTATTGGAGAAAAAGAGAGAGGCGGTTTACTTAGTCGTCTTCTCTTTACTCCTGTTGTTTCATATACACAGGCACCGATTTACTGTGCTTTTCAAGATGTTGAAATCTTCAAATGCAAGTAGTACACAATCATGACGAATTCTCTCACACATACACTCTCAGCTGGCCAGAAAACAAAACGACTTGGACCGAATAACTTTGTTTCACGGAGCAGATTGAGCCAACACGAAAACGAGAGCAAAAAGCAGCTAGAGAAATGGGCGAAGGCGCACATAACATAGGAGAGATACATTCAAGGTTATTATGTAAATAAGTGTGTCGGCGCCAAAAGTCTGCGAGAAAGAAGGAGATTCCTTATATAACCATCAAATAAGAAACGAGCAATAAGAAATGGAAAATTTCTACTCGAGTTCACTAAAATGGGAAAGGGCAATCATGAAGAAAAATTTCTCGAGTTGTTTTTCAGGTCAGCAATCCCTCCAGGAAGAAAATAGCGTTTCTCTATTTATTCTATAAGTGGAATTCGCAGTGTGGAATTAGGAAGAAGATTGCCGAGATTATTTTCGAAAGTGGGTTTTGCAAACTAAAATAGGAATTTTTTCGTGACAATTCTACGGATGCAAACGAAGCCACTGCAAAAATTAGAGCAATATGTTTTGAATTGAATCAAAAGTCAGAAACATGAAGAAACATGAATTTTTTAATTCTTTTATCTTTGATTGTTTTTTCTATTTTTTGCGAAGAAAATGTTTATTGAAAAAAAGGCTAACCTGATACCGTCGGTAATCCGATAAACAGTAGTGACAACCATAAAGTTGTTGTCATCCTGTGCAAAAAATGGTCAAAAATTCCTTCGGCTTG</canonical>
            <polymorphic>TGTGTGCCGTTTTGTTTGGTAAGTTGTGTGATCCACCCCGCGCTGCACTTTCTGTGAACACTTTTTGGCTGCTTCTGACTGCCTGCCTACCTCTCCTCTTTTCAACCTACTTATTTACCTATAGCTAATAAGCAACTTCTTATTGGAGAAAAAGAGAGAGGCGGTTTACTTAGTCGTCTTCTCTTTACTCCTGTTGTTTCATATACACAGGCACCGATTTACTGTGCTTTTCAAGATGTTGAAATCTTCAAATGCAAGTAGTACACAATCATGACGAATTCTCTCACACATACACTCTCAGCTGGCCAGAAAACAAAACGACTTGGACCGAATAACTTTGTTTCACGGAGCAGATTGAGCCAACACGAAAACGAGAGCAAAAAGCAGCTAGAGAAATGGGCGAAGGCGCACATAACATAGGAGAGATACATTCAAGGTTATTATGTAAATAAGTGTGTCGGCGCCAAAAGTCTGCGAGAAAGAAGGAGATTCCTTATATRACCATCAAATAAGAAACGAGCAATAAGAAATGGAAAATTTCTACTCGAGTTCACTAAAATGGGAAAGGGCAATCATGAAGAAAAATTTCTCGAGTTGTTTTTCAGGTCAGCAATCCCTCCAGGAAGAAAATAGCGTTTCTCTATTTATTCTATAAGTGGAATTCGCAGTGTGGAATTAGGAAGAAGATTGCCGAGATTATTTTCGAAAGTGGGTTTTGCAAACTAAAATAGGAATTTTTTCGTGACAATTCTACGGATGCAAACGAAGCCACTGCAAAAATTAGAGCAATATGTTTTGAATTGAATCAAAAGTCAGAAACATGAAGAAACATGAATTTTTTAATTCTTTTATCTTTGATTGTTTTTTCTATTTTTTGCGAAGAAAATGTTTATTGAAAAAAAGGCTAACCTGATACCGTCGGTAATCCGATAAACAGTAGTGACAACCATAAAGTTGTTGTCATCCTGTGCAAAAAATGGTCAAAAATTCCTTCGGCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATAGGAGAGATACATTCAAGGTT</pcr_primer_p1>
		<pcr_primer_p2>GCGAATTCCACTTATAGAATAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CATAGGAGAGATACATTCAAGGTTATTATGTAAATAAGTGTGTCGGCGCCAAAAGTCTGCGAGAAAGAAGGAGATTCCTTATATAACCATCAAATAAGAAACGAGCAATAAGAAATGGAAAATTTCTACTCGAGTTCACTAAAATGGGAAAGGGCAATCATGAAGAAAAATTTCTCGAGTTGTTTTTCAGGTCAGCAATCCCTCCAGGAAGAAAATAGCGTTTCTCTATTTATTCTATAAGTGGAATTCGC</canonical_amplicon>
		<polymorphic_amplicon>CATAGGAGAGATACATTCAAGGTTATTATGTAAATAAGTGTGTCGGCGCCAAAAGTCTGCGAGAAAGAAGGAGATTCCTTATATRACCATCAAATAAGAAACGAGCAATAAGAAATGGAAAATTTCTACTCGAGTTCACTAAAATGGGAAAGGGCAATCATGAAGAAAAATTTCTCGAGTTGTTTTTCAGGTCAGCAATCCCTCCAGGAAGAAAATAGCGTTTCTCTATTTATTCTATAAGTGGAATTCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31392</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>318715</contig_pos>
        <strand>+</strand>
        <context>AAATTTCTTG[C/T]TAAAATGGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCTACGACGTGCTCGACGAGCAGCTCTTAGACAGTGAGAAATTTCTTG</left_flank>
        <right_flank>TAAAATGGGTGCCCCAACTGAAGATACCATTGTTAGTAGAAAACAGTCGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAGAAAGCTTCTTATGTTAATTGAAATATTTTATGAGATGCTTCTTGAATGCTTTTGTAATATATTTGATGAGCAAGGCGCATTTGAAGGACGTGTTTCGATTACACTTTTCCGTTTTTTTACGGTTCCCTAAAAGCAAAAAGACTAGAAATAGCATATAAGAAGTGTTTATCGAATTGGGGATGGATTTCTTTCTAGCACGTGATTCTCCCCTCCCTTTTGCTTCTTCTCGCTCTCATTTTTCAGTTAATCCGTTCGTTCAATTCTTTTATCAAATCCTCTTGTCATGTTTTTGTTCATTGGGGATTAATTCACAAACAATTTTTACATACCCCGCATTTTGCGTTTCTCTTCTTATCCGCTTTATATTCTTCTCACAAGTATCATACTTTCTCATATATAAATCTTAGGCTCCCAATGAATGAGATTAATTTGGTAGCTGAGAAATTCTACGACGTGCTCGACGAGCAGCTCTTAGACAGTGAGAAATTTCTTGCTAAAATGGGTGCCCCAACTGAAGATACCATTGTTAGTAGAAAACAGTCGGCGAGCGATCTACAAAGTCGTCTCAAAACGAGAAAGCTGCTCGGTGTGGGAGAGTTGGCAGGAGACAATGGCGATGTTTACAAATCAAAAGTGAGTTATTTTTCAATTTTTCGAGTTTAACTATTCAAATCAGATATCTCAACTTCTCGGAATCAATGAATCACTCTACGTCCGTTTGCCACGAGGAATGTTCGTATGGAACACTCTGAACTCTGTCTACTTCCTTCTAATCGGCGCAATAGTGAGTTCATATTTTGAATTAATGAACTTCATGTCATTCTTCAGTGTCTGTTCCTGCCGCGTTTTGGTCTATACCTAGACCATGGAATCGAATCAATTCCAATCGAAGCATACGTGATTGTTCGTTACTATGGTGTCACGCTGCTGTCCTTTGGATTGTTGTTCAAGTAATATCCTTAATTGAAATTGAGTCGAATTTTCATTTCTGGCA</canonical>
            <polymorphic>AAGAAGAAAGCTTCTTATGTTAATTGAAATATTTTATGAGATGCTTCTTGAATGCTTTTGTAATATATTTGATGAGCAAGGCGCATTTGAAGGACGTGTTTCGATTACACTTTTCCGTTTTTTTACGGTTCCCTAAAAGCAAAAAGACTAGAAATAGCATATAAGAAGTGTTTATCGAATTGGGGATGGATTTCTTTCTAGCACGTGATTCTCCCCTCCCTTTTGCTTCTTCTCGCTCTCATTTTTCAGTTAATCCGTTCGTTCAATTCTTTTATCAAATCCTCTTGTCATGTTTTTGTTCATTGGGGATTAATTCACAAACAATTTTTACATACCCCGCATTTTGCGTTTCTCTTCTTATCCGCTTTATATTCTTCTCACAAGTATCATACTTTCTCATATATAAATCTTAGGCTCCCAATGAATGAGATTAATTTGGTAGCTGAGAAATTCTACGACGTGCTCGACGAGCAGCTCTTAGACAGTGAGAAATTTCTTGYTAAAATGGGTGCCCCAACTGAAGATACCATTGTTAGTAGAAAACAGTCGGCGAGCGATCTACAAAGTCGTCTCAAAACGAGAAAGCTGCTCGGTGTGGGAGAGTTGGCAGGAGACAATGGCGATGTTTACAAATCAAAAGTGAGTTATTTTTCAATTTTTCGAGTTTAACTATTCAAATCAGATATCTCAACTTCTCGGAATCAATGAATCACTCTACGTCCGTTTGCCACGAGGAATGTTCGTATGGAACACTCTGAACTCTGTCTACTTCCTTCTAATCGGCGCAATAGTGAGTTCATATTTTGAATTAATGAACTTCATGTCATTCTTCAGTGTCTGTTCCTGCCGCGTTTTGGTCTATACCTAGACCATGGAATCGAATCAATTCCAATCGAAGCATACGTGATTGTTCGTTACTATGGTGTCACGCTGCTGTCCTTTGGATTGTTGTTCAAGTAATATCCTTAATTGAAATTGAGTCGAATTTTCATTTCTGGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATAAATCTTAGGCTCCCAATG</pcr_primer_p1>
		<pcr_primer_p2>GAAAAATAACTCACTTTTGATTTG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ATATAAATCTTAGGCTCCCAATGAATGAGATTAATTTGGTAGCTGAGAAATTCTACGACGTGCTCGACGAGCAGCTCTTAGACAGTGAGAAATTTCTTGCTAAAATGGGTGCCCCAACTGAAGATACCATTGTTAGTAGAAAACAGTCGGCGAGCGATCTACAAAGTCGTCTCAAAACGAGAAAGCTGCTCGGTGTGGGAGAGTTGGCAGGAGACAATGGCGATGTTTACAAATCAAAAGTGAGTTATTTTTC</canonical_amplicon>
		<polymorphic_amplicon>ATATAAATCTTAGGCTCCCAATGAATGAGATTAATTTGGTAGCTGAGAAATTCTACGACGTGCTCGACGAGCAGCTCTTAGACAGTGAGAAATTTCTTGYTAAAATGGGTGCCCCAACTGAAGATACCATTGTTAGTAGAAAACAGTCGGCGAGCGATCTACAAAGTCGTCTCAAAACGAGAAAGCTGCTCGGTGTGGGAGAGTTGGCAGGAGACAATGGCGATGTTTACAAATCAAAAGTGAGTTATTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31393</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>334047</contig_pos>
        <strand>+</strand>
        <context>AAGTCGGTCT[C/T]TACTTGGTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATTACCCCGTTACATCATCCATAAAACCAGCTTTTTCCAAGTCGGTCT</left_flank>
        <right_flank>TACTTGGTCCTTGTACTCAGCATAGAATTTGCGAAGGTCCCGAACAAGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTGGTAGTTTATTGTTTCCTAATCCTTTTTTGATAATAAAACATTATTAGGTTGCGAAGAACTCTACACGTTGCTGGAAGGCTTGCACAAATACAGTATCCATTTACCGGTCGACTTGGCTTTGAGGCCTTTTGAACAAATCAAGGACGCGTTTTGAAACAGGTGCAAGATGATGCATATTGATTATTTTCATTGAAAAATATTCATAGATGACAAACAGGTTTTGAGCCAAATCCGCATAATTATTTTAATAATAAATAAATATGGTTAGTATTTCAATTCGAATGTTACAATTATCCAAACAAATCTGTCAATACATTGGAAAGATAGTTGATAGGAGTTGCTTTCCGGCACTTTGACCAATCGGCGTAATGGATTGGGTTGCTTCTGAAATTCCAAATGAGATTTGTACTTTTCGAATTAGTTTCCAGAGCTTCAAGAACTAATCAATTACCCCGTTACATCATCCATAAAACCAGCTTTTTCCAAGTCGGTCTCTACTTGGTCCTTGTACTCAGCATAGAATTTGCGAAGGTCCCGAACAAGACCTATCATTGGGAATCTTGCCCAGTTGGATAGAATCACGTATTCGTATTGACCATGCTGCTTGTTTATTGGTCCAACAACGACGATTTGATCTGAAATATTCATAATCCAGGAAACTATGCAATTTTTGAAGGGAACACAAATTCCTTGAGATTGGCTAATTTTTTCATTATGAACTTTTTTTTCACTCAGTCAACTTCCGAGTATTCTGAATTGAACAAGAAATTCAAAATTGCAGATCAAAATTTTCTAAAGAAGAACTTTTTGTGGAACGTAGAAACTTACATGGACAGGGGTCGTCTTGCATGTAAACATAAGTTCTTTCCCTATGAATAATTCCATATCCGAACGCAACCTGGAATAGTCGATAAAGTGTTGGAAGTTCAAAAAAGACATCAGATCTTTTGTTTTTTACAACAATTAAAAAATTAATTATTGTTACATAAAACGTA</canonical>
            <polymorphic>AACTGGTAGTTTATTGTTTCCTAATCCTTTTTTGATAATAAAACATTATTAGGTTGCGAAGAACTCTACACGTTGCTGGAAGGCTTGCACAAATACAGTATCCATTTACCGGTCGACTTGGCTTTGAGGCCTTTTGAACAAATCAAGGACGCGTTTTGAAACAGGTGCAAGATGATGCATATTGATTATTTTCATTGAAAAATATTCATAGATGACAAACAGGTTTTGAGCCAAATCCGCATAATTATTTTAATAATAAATAAATATGGTTAGTATTTCAATTCGAATGTTACAATTATCCAAACAAATCTGTCAATACATTGGAAAGATAGTTGATAGGAGTTGCTTTCCGGCACTTTGACCAATCGGCGTAATGGATTGGGTTGCTTCTGAAATTCCAAATGAGATTTGTACTTTTCGAATTAGTTTCCAGAGCTTCAAGAACTAATCAATTACCCCGTTACATCATCCATAAAACCAGCTTTTTCCAAGTCGGTCTYTACTTGGTCCTTGTACTCAGCATAGAATTTGCGAAGGTCCCGAACAAGACCTATCATTGGGAATCTTGCCCAGTTGGATAGAATCACGTATTCGTATTGACCATGCTGCTTGTTTATTGGTCCAACAACGACGATTTGATCTGAAATATTCATAATCCAGGAAACTATGCAATTTTTGAAGGGAACACAAATTCCTTGAGATTGGCTAATTTTTTCATTATGAACTTTTTTTTCACTCAGTCAACTTCCGAGTATTCTGAATTGAACAAGAAATTCAAAATTGCAGATCAAAATTTTCTAAAGAAGAACTTTTTGTGGAACGTAGAAACTTACATGGACAGGGGTCGTCTTGCATGTAAACATAAGTTCTTTCCCTATGAATAATTCCATATCCGAACGCAACCTGGAATAGTCGATAAAGTGTTGGAAGTTCAAAAAAGACATCAGATCTTTTGTTTTTTACAACAATTAAAAAATTAATTATTGTTACATAAAACGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTGGAAAGATAGTTGATAGGA</pcr_primer_p1>
		<pcr_primer_p2>AAGATTCCCAATGATAGGTCTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATTGGAAAGATAGTTGATAGGAGTTGCTTTCCGGCACTTTGACCAATCGGCGTAATGGATTGGGTTGCTTCTGAAATTCCAAATGAGATTTGTACTTTTCGAATTAGTTTCCAGAGCTTCAAGAACTAATCAATTACCCCGTTACATCATCCATAAAACCAGCTTTTTCCAAGTCGGTCTCTACTTGGTCCTTGTACTCAGCATAGAATTTGCGAAGGTCCCGAACAAGACCTATCATTGGGAATCTT</canonical_amplicon>
		<polymorphic_amplicon>CATTGGAAAGATAGTTGATAGGAGTTGCTTTCCGGCACTTTGACCAATCGGCGTAATGGATTGGGTTGCTTCTGAAATTCCAAATGAGATTTGTACTTTTCGAATTAGTTTCCAGAGCTTCAAGAACTAATCAATTACCCCGTTACATCATCCATAAAACCAGCTTTTTCCAAGTCGGTCTYTACTTGGTCCTTGTACTCAGCATAGAATTTGCGAAGGTCCCGAACAAGACCTATCATTGGGAATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31394</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>386182</contig_pos>
        <strand>+</strand>
        <context>GTTTCAAACG[A/C]TCTCTCTACC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTTGCTGCACGTCTTCCGTTCTTTTCTGTCTTTTTGCCCGTTTCAAACG</left_flank>
        <right_flank>TCTCTCTACCCCATCATGTCCTTGTGTTCCGTATAAAAACTGAGCAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCGTTTATCTCTGTTCAGCAAGAATTCTTACTTATTAGGATCATTGAATATATTGGTGGTTGTGGTTTACATTAAGATAGTTTCGCAGGATATGGACGTGGTGGATGAGCGTTTACCGGACAACTTTGGCGATTTTTTGCTCACTTTCTCCGAGCTAGTCTCTTGTGTCGTTTTCACTACTTATGCTACACCGGTTTCGATTTTTGCAATAGCGTTCATTGCTGTTGGATGTCTTTTTATCCTGGTGATTCTTCATTTCTAGAATTTCTTAACTGTTGCATCCACGTTTTCACGACAAAGTTTGCCAAAAAAAAAACCAACAACTGACAGAGAAACGTGTTCTATAGATAAGAAACTGCAATTTACGAATTGTTGTTGTGAAATCATCAGTTCCGAAACTTAACGCTGTTCAGAATAATGATTAGTATATTGCAAATGATTAATAGTGTTTGCTGCACGTCTTCCGTTCTTTTCTGTCTTTTTGCCCGTTTCAAACGCTCTCTCTACCCCATCATGTCCTTGTGTTCCGTATAAAAACTGAGCAAAAAACGCTACCTTAAGATAACACACAATAACCCTTCTCGAAACTTGTATACGTTCTTTTTTCCCTCAGGACATTGAAGCTGTTGATCAAACGCTTCCACATTCGATTCGCGCAATGGTTATGACAATTTTCAATGTGATCTCGACAGTTGTCGTGATTATCTGGGCGACACCATGGGCTGGAATTGCATTTTTCGTTCTGGGCCTCATCTACTTTGTTGTCCTGGTACGATTGCTTTCATATTAACCGTCACTCCCAGCATGAAATCAAAGTTTTGAAAATTTTTATTGAAGTGTTTGATGTGTAGTGTGTGTGAAACTGATAAAATAAAAGTGTGAAAAGCATGGAGTTAGTATTTTATGGAGTTTTTCTCAGGATGTTGATGTCATCGACTCTCGATTGCCTGCTTGCATAATGACATTTGTTGGAGCAATTGTACAAGCTGTGACTATTT</canonical>
            <polymorphic>TGTCGTTTATCTCTGTTCAGCAAGAATTCTTACTTATTAGGATCATTGAATATATTGGTGGTTGTGGTTTACATTAAGATAGTTTCGCAGGATATGGACGTGGTGGATGAGCGTTTACCGGACAACTTTGGCGATTTTTTGCTCACTTTCTCCGAGCTAGTCTCTTGTGTCGTTTTCACTACTTATGCTACACCGGTTTCGATTTTTGCAATAGCGTTCATTGCTGTTGGATGTCTTTTTATCCTGGTGATTCTTCATTTCTAGAATTTCTTAACTGTTGCATCCACGTTTTCACGACAAAGTTTGCCAAAAAAAAAACCAACAACTGACAGAGAAACGTGTTCTATAGATAAGAAACTGCAATTTACGAATTGTTGTTGTGAAATCATCAGTTCCGAAACTTAACGCTGTTCAGAATAATGATTAGTATATTGCAAATGATTAATAGTGTTTGCTGCACGTCTTCCGTTCTTTTCTGTCTTTTTGCCCGTTTCAAACGMTCTCTCTACCCCATCATGTCCTTGTGTTCCGTATAAAAACTGAGCAAAAAACGCTACCTTAAGATAACACACAATAACCCTTCTCGAAACTTGTATACGTTCTTTTTTCCCTCAGGACATTGAAGCTGTTGATCAAACGCTTCCACATTCGATTCGCGCAATGGTTATGACAATTTTCAATGTGATCTCGACAGTTGTCGTGATTATCTGGGCGACACCATGGGCTGGAATTGCATTTTTCGTTCTGGGCCTCATCTACTTTGTTGTCCTGGTACGATTGCTTTCATATTAACCGTCACTCCCAGCATGAAATCAAAGTTTTGAAAATTTTTATTGAAGTGTTTGATGTGTAGTGTGTGTGAAACTGATAAAATAAAAGTGTGAAAAGCATGGAGTTAGTATTTTATGGAGTTTTTCTCAGGATGTTGATGTCATCGACTCTCGATTGCCTGCTTGCATAATGACATTTGTTGGAGCAATTGTACAAGCTGTGACTATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTGCAATTTACGAATTGTT</pcr_primer_p1>
		<pcr_primer_p2>GAACGTATACAAGTTTCGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAACTGCAATTTACGAATTGTTGTTGTGAAATCATCAGTTCCGAAACTTAACGCTGTTCAGAATAATGATTAGTATATTGCAAATGATTAATAGTGTTTGCTGCACGTCTTCCGTTCTTTTCTGTCTTTTTGCCCGTTTCAAACGCTCTCTCTACCCCATCATGTCCTTGTGTTCCGTATAAAAACTGAGCAAAAAACGCTACCTTAAGATAACACACAATAACCCTTCTCGAAACTTGTATACGTTC</canonical_amplicon>
		<polymorphic_amplicon>AAACTGCAATTTACGAATTGTTGTTGTGAAATCATCAGTTCCGAAACTTAACGCTGTTCAGAATAATGATTAGTATATTGCAAATGATTAATAGTGTTTGCTGCACGTCTTCCGTTCTTTTCTGTCTTTTTGCCCGTTTCAAACGMTCTCTCTACCCCATCATGTCCTTGTGTTCCGTATAAAAACTGAGCAAAAAACGCTACCTTAAGATAACACACAATAACCCTTCTCGAAACTTGTATACGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31395</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>431590</contig_pos>
        <strand>+</strand>
        <context>TTTGCAAATC[A/G]AACATTTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATGTTTTAGCAAGTTTCCCTTTCCGATTAAAAGCTAGTTTTGCAAATC</left_flank>
        <right_flank>AACATTTTTGACAACTCTAACACAAAGTAATAACTGAGTGCGGCTCAAAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGTCCCGCGTATTAGAGTACCTCGTGCTCCACCACAATTCATTGGTTACGAAGTTATTAACAGGCAGTATTTGCAATTCAATCCCAACCCACTTGATACCGAACCGAACACCGTTCATGTTGCCCTGTTGAATGAGTATCATGACTATTTGTAAGTGTTGAGTAAAAAAGCGGGGAAGACTCAAAAAAGGATGAAAAAAAGAGGATTATTGGAGACAAAGGATAACGTAACCTTCAACTTTCTAGCACGCGAACAGAAACACGCAAATACAAAGAAACAAACAAAAACATAAAACAAAATACCGTAACAAGTGTAGGTAGGAACATTGAAGCTGATGAAGGCCATTTTCGAGTGTTTGTTTTTGTGAATCTGATTTTCAATATTTTCCTATTGCATTTTTGTAAGCACAAGTGAAGACGATATGGTCAGCATTACATGTGCCATTTCAAATGTTTTAGCAAGTTTCCCTTTCCGATTAAAAGCTAGTTTTGCAAATCGAACATTTTTGACAACTCTAACACAAAGTAATAACTGAGTGCGGCTCAAACTATCGGCCACTTCAAAACGAATTTTTGAATTCTAAGAATGTAAAAATTACATAGTCAATTTTCAAAACTCTAACGGGGTGTGTTCGTGCCAGCCTTCTAGATTTGTTCAGACAAACAGAGCAGTGCAATTTCAATGGAATTCTTTGACGTTGAACGCTTTTCAGACTTCCGAGACCACGCTCTCGTGCAGAAGTCGAGCCTGTCAGTTTCATCAGTATTCTCTTCTTGACCACGTGTATCTACATGTTGTACAAAGAGATTATGGGTATAAAATGAGTAAACTTCCCCCAGTTAAATATTTTGATTAATGATTTGGAAAACTGAGGTATAATTTGCCATAAACTTTTCGCTCCATTTCTTTCTCACTTCATCGTATACTTTCTCTCATTTTTTCTTTTATTGACTATGCGAAAAAAGTCAAAACCACGCAAGATATTTTTCTTGAACATC</canonical>
            <polymorphic>GAAGTCCCGCGTATTAGAGTACCTCGTGCTCCACCACAATTCATTGGTTACGAAGTTATTAACAGGCAGTATTTGCAATTCAATCCCAACCCACTTGATACCGAACCGAACACCGTTCATGTTGCCCTGTTGAATGAGTATCATGACTATTTGTAAGTGTTGAGTAAAAAAGCGGGGAAGACTCAAAAAAGGATGAAAAAAAGAGGATTATTGGAGACAAAGGATAACGTAACCTTCAACTTTCTAGCACGCGAACAGAAACACGCAAATACAAAGAAACAAACAAAAACATAAAACAAAATACCGTAACAAGTGTAGGTAGGAACATTGAAGCTGATGAAGGCCATTTTCGAGTGTTTGTTTTTGTGAATCTGATTTTCAATATTTTCCTATTGCATTTTTGTAAGCACAAGTGAAGACGATATGGTCAGCATTACATGTGCCATTTCAAATGTTTTAGCAAGTTTCCCTTTCCGATTAAAAGCTAGTTTTGCAAATCRAACATTTTTGACAACTCTAACACAAAGTAATAACTGAGTGCGGCTCAAACTATCGGCCACTTCAAAACGAATTTTTGAATTCTAAGAATGTAAAAATTACATAGTCAATTTTCAAAACTCTAACGGGGTGTGTTCGTGCCAGCCTTCTAGATTTGTTCAGACAAACAGAGCAGTGCAATTTCAATGGAATTCTTTGACGTTGAACGCTTTTCAGACTTCCGAGACCACGCTCTCGTGCAGAAGTCGAGCCTGTCAGTTTCATCAGTATTCTCTTCTTGACCACGTGTATCTACATGTTGTACAAAGAGATTATGGGTATAAAATGAGTAAACTTCCCCCAGTTAAATATTTTGATTAATGATTTGGAAAACTGAGGTATAATTTGCCATAAACTTTTCGCTCCATTTCTTTCTCACTTCATCGTATACTTTCTCTCATTTTTTCTTTTATTGACTATGCGAAAAAAGTCAAAACCACGCAAGATATTTTTCTTGAACATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>351 255 246 148</canonical_bands>
                <polymorphic_bands>394 351 255</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAATATTTTCCTATTGCATTT</pcr_primer_p1>
		<pcr_primer_p2>CGTTAGAGTTTTGAAAATTGACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTCAATATTTTCCTATTGCATTTTTGTAAGCACAAGTGAAGACGATATGGTCAGCATTACATGTGCCATTTCAAATGTTTTAGCAAGTTTCCCTTTCCGATTAAAAGCTAGTTTTGCAAATCGAACATTTTTGACAACTCTAACACAAAGTAATAACTGAGTGCGGCTCAAACTATCGGCCACTTCAAAACGAATTTTTGAATTCTAAGAATGTAAAAATTACATAGTCAATTTTCAAAACTCTAACG</canonical_amplicon>
		<polymorphic_amplicon>TTCAATATTTTCCTATTGCATTTTTGTAAGCACAAGTGAAGACGATATGGTCAGCATTACATGTGCCATTTCAAATGTTTTAGCAAGTTTCCCTTTCCGATTAAAAGCTAGTTTTGCAAATCRAACATTTTTGACAACTCTAACACAAAGTAATAACTGAGTGCGGCTCAAACTATCGGCCACTTCAAAACGAATTTTTGAATTCTAAGAATGTAAAAATTACATAGTCAATTTTCAAAACTCTAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31396</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>435855</contig_pos>
        <strand>+</strand>
        <context>GAACCTGAAG[A/T]GGATAAAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGCCAGACTCCGACCCCAAACAGAGCCTGTTGTGGTCAGTGAACCTGAAG</left_flank>
        <right_flank>GGATAAAATAAAAAAAAGGCTAAGAAGAACAATAAAAAGAAGAACAAGCC</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAGAATTCGATTCAATTTCTCTGGACACCCAAGACGTTACATGCTCGGTCGATTCGTTGGTAAATGATCGACCGGTTGGGCGCATTCGCACTAGATTAACTCAAAAACAACGTCGGGAGATGGCTCGTTTAGCAAAAGAAAGAACAATGTCGCACAATCAGAAAACCGATAACTTTTTCAAATTCGTATGTTTCTTTTTTGGAGCGAAAGGAGAATTGGAAGCAGTAAAATATGAAGAATTTCAAAAACCACTATCAAGCCCAAAAGAGTGGAAAAAACGCAGTGGATATAATCGCCGTAAAAATAGCCTAAAAGTATCGCAATTGCCACCGAAACAGAAGTGAGTTTTTCCAGTGTACTCATATGTTGTAATTGTGGAATCAAATCATTCAGAGAGCCGATTATCGTTGATGAAGACGGATTTCAAGTGGTAACAAAAAAGAAAGCTGCCAGACTCCGACCCCAAACAGAGCCTGTTGTGGTCAGTGAACCTGAAGTGGATAAAATAAAAAAAAGGCTAAGAAGAACAATAAAAAGAAGAACAAGCCAGTGAAACCTTCCGCAGCGACAATCATCCATGACATGAAATCGTATTATAGCATTACCGATCCAATGGTAGAAATGGAAGACGAGGAATACGAAGACACCTTGTGCTCGGAAACTCCAGAACCTACGTACCAGGGATCTGATGTTGAAGTTCTAGAAGTTCACCAACTACCGGATAATCTCAAAATGTATTCCGTGAAAGACCAGGCACAAGAATACAAAATTCGAGAGGGAGAAGATGGATATGCAGCAAGTTCGTCGTTTTCACTCAGTTCTTTTGAATAGAAATATATTATTTTTATGAAAACCCTTTTTTCAGTCATTCATTATATCTCACAATTCCTGCTCATCATGTTCTTCATGATATTTGTTCCCTTCTCGAACGCCGTCAACTATCTTTGGCAAGACTGTAACTCACCACAGCCATTGGAAAACTGCCAACACCTCGACGA</canonical>
            <polymorphic>ATCAGAATTCGATTCAATTTCTCTGGACACCCAAGACGTTACATGCTCGGTCGATTCGTTGGTAAATGATCGACCGGTTGGGCGCATTCGCACTAGATTAACTCAAAAACAACGTCGGGAGATGGCTCGTTTAGCAAAAGAAAGAACAATGTCGCACAATCAGAAAACCGATAACTTTTTCAAATTCGTATGTTTCTTTTTTGGAGCGAAAGGAGAATTGGAAGCAGTAAAATATGAAGAATTTCAAAAACCACTATCAAGCCCAAAAGAGTGGAAAAAACGCAGTGGATATAATCGCCGTAAAAATAGCCTAAAAGTATCGCAATTGCCACCGAAACAGAAGTGAGTTTTTCCAGTGTACTCATATGTTGTAATTGTGGAATCAAATCATTCAGAGAGCCGATTATCGTTGATGAAGACGGATTTCAAGTGGTAACAAAAAAGAAAGCTGCCAGACTCCGACCCCAAACAGAGCCTGTTGTGGTCAGTGAACCTGAAGWGGATAAAATAAAAAAAAGGCTAAGAAGAACAATAAAAAGAAGAACAAGCCAGTGAAACCTTCCGCAGCGACAATCATCCATGACATGAAATCGTATTATAGCATTACCGATCCAATGGTAGAAATGGAAGACGAGGAATACGAAGACACCTTGTGCTCGGAAACTCCAGAACCTACGTACCAGGGATCTGATGTTGAAGTTCTAGAAGTTCACCAACTACCGGATAATCTCAAAATGTATTCCGTGAAAGACCAGGCACAAGAATACAAAATTCGAGAGGGAGAAGATGGATATGCAGCAAGTTCGTCGTTTTCACTCAGTTCTTTTGAATAGAAATATATTATTTTTATGAAAACCCTTTTTTCAGTCATTCATTATATCTCACAATTCCTGCTCATCATGTTCTTCATGATATTTGTTCCCTTCTCGAACGCCGTCAACTATCTTTGGCAAGACTGTAACTCACCACAGCCATTGGAAAACTGCCAACACCTCGACGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>97 94 81 69 64 63 57 57 53 53 51 44 34 29 23 21 20 14 14 13 12 11 9 7 7 3</canonical_bands>
                <polymorphic_bands>97 94 81 69 64 64 63 57 57 53 51 44 34 29 23 21 20 14 14 13 12 9 7 7 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTTGTAATTGTGGAATCAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTGGATCGGTAATGCTATAATAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGTTGTAATTGTGGAATCAAATCATTCAGAGAGCCGATTATCGTTGATGAAGACGGATTTCAAGTGGTAACAAAAAAGAAAGCTGCCAGACTCCGACCCCAAACAGAGCCTGTTGTGGTCAGTGAACCTGAAGTGGATAAAATAAAAAAAAGGCTAAGAAGAACAATAAAAAGAAGAACAAGCCAGTGAAACCTTCCGCAGCGACAATCATCCATGACATGAAATCGTATTATAGCATTACCGATCCAA</canonical_amplicon>
		<polymorphic_amplicon>ATGTTGTAATTGTGGAATCAAATCATTCAGAGAGCCGATTATCGTTGATGAAGACGGATTTCAAGTGGTAACAAAAAAGAAAGCTGCCAGACTCCGACCCCAAACAGAGCCTGTTGTGGTCAGTGAACCTGAAGWGGATAAAATAAAAAAAAGGCTAAGAAGAACAATAAAAAGAAGAACAAGCCAGTGAAACCTTCCGCAGCGACAATCATCCATGACATGAAATCGTATTATAGCATTACCGATCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31397</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>448209</contig_pos>
        <strand>+</strand>
        <context>AGAAAATTGA[A/T]TTTTTTTWAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCAATCCAAAAAAAGTTCATTGATTTTCTTCGTTTAAATCAGAAAATTGA</left_flank>
        <right_flank>TTTTTTTTAATTAAGGTTCATTCGACTTGAAACTCACCAAGTATGCCCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCAAGGAAAATTATTCGAAAAATGAAATATTGTTTTGAAATCGTTTTTGAAATAAAATCCGGGCTGAGAGCACGGAAGCCTGTCAAATCTCGAAAATCTAGAATATTTCAAGAGTGGTGATTTCAGATGATTTTGAAGTGCACAGATAATTGTCAAAGAAGTTCCAACAGTTTTTTTGATGATTTCATTTTTAGGAGTGATCTGATTGGATGGCACAAAACTTTGCGTTACACTTACTAAGACAATGTCTATCAGGATATCCTCGAGTGTTCAATGATCCCAAAAACGATTGGAGCATTCCTTTACTACACTCGTTGAACAGTTGCCAGTGGGTTTCGCCTATATGGTGCACATTGGCCTTCATATTGAATCGAGCACTGCAAATTCGAAAGTCATAATGTATTTTCCGGTTATTTTTTTCGTTTTCTGGTTGACAATATAGAAACGCAATCCAAAAAAAGTTCATTGATTTTCTTCGTTTAAATCAGAAAATTGATTTTTTTTTAATTAAGGTTCATTCGACTTGAAACTCACCAAGTATGCCCAATCGCATTTGACATTAGAAGAATGAATAGGATATCAAGCATAGCTCACATGGCCGATATTATTGGTTAAGACGCGGAATTTGTCTTTTGAAACAATGCCGTTTATCTTCTCATTCAAAACGTCGTAGAAAATCTAACAAATGACAAGCGGAAGTAAAAATTAATTGAAAGAAAAAAGCAGGATGTGAATAGAGTAAGGTGAAGTGGAGGTGTTCGAAGATGTGACTAAACAAAAACTCCTAATGTTCCGAAAGTTGAGAAGGGAAAAGGATAAGCCGGAGAAAAAGAATCAGACGCAAGAATTTAATCAACTTTTTCATCACTTTTTTATTTTCCGTCAAAACACATTGTAATTACAACTTGAAGACGTCGGGCAATTGTTTCCAGAGAAACATCAGAAAGAGAACAAGACAGGGCAAAACCAGAAAGAATAACTATTGACTGCGCATCAT</canonical>
            <polymorphic>TTTTCAAGGAAAATTATTCGAAAAATGAAATATTGTTTTGAAATCGTTTTTGAAATAAAATCCGGGCTGAGAGCACGGAAGCCTGTCAAATCTCGAAAATCTAGAATATTTCAAGAGTGGTGATTTCAGATGATTTTGAAGTGCACAGATAATTGTCAAAGAAGTTCCAACAGTTTTTTTGATGATTTCATTTTTAGGAGTGATCTGATTGGATGGCACAAAACTTTGCGTTACACTTACTAAGACAATGTCTATCAGGATATCCTCGAGTGTTCAATGATCCCAAAAACGATTGGAGCATTCCTTTACTACACTCGTTGAACAGTTGCCAGTGGGTTTCGCCTATATGGTGCACATTGGCCTTCATATTGAATCGAGCACTGCAAATTCGAAAGTCATAATGTATTTTCCGGTTATTTTTTTCGTTTTCTGGTTGACAATATAGAAACGCAATCCAAAAAAAGTTCATTGATTTTCTTCGTTTAAATCAGAAAATTGAWTTTTTTTTAATTAAGGTTCATTCGACTTGAAACTCACCAAGTATGCCCAATCGCATTTGACATTAGAAGAATGAATAGGATATCAAGCATAGCTCACATGGCCGATATTATTGGTTAAGACGCGGAATTTGTCTTTTGAAACAATGCCGTTTATCTTCTCATTCAAAACGTCGTAGAAAATCTAACAAATGACAAGCGGAAGTAAAAATTAATTGAAAGAAAAAAGCAGGATGTGAATAGAGTAAGGTGAAGTGGAGGTGTTCGAAGATGTGACTAAACAAAAACTCCTAATGTTCCGAAAGTTGAGAAGGGAAAAGGATAAGCCGGAGAAAAAGAATCAGACGCAAGAATTTAATCAACTTTTTCATCACTTTTTTATTTTCCGTCAAAACACATTGTAATTACAACTTGAAGACGTCGGGCAATTGTTTCCAGAGAAACATCAGAAAGAGAACAAGACAGGGCAAAACCAGAAAGAATAACTATTGACTGCGCATCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTTTCTGGTTGACAATATAGA</pcr_primer_p1>
		<pcr_primer_p2>GACGTTTTGAATGAGAAGATAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGTTTTCTGGTTGACAATATAGAAACGCAATCCAAAAAAAGTTCATTGATTTTCTTCGTTTAAATCAGAAAATTGATTTTTTTTTAATTAAGGTTCATTCGACTTGAAACTCACCAAGTATGCCCAATCGCATTTGACATTAGAAGAATGAATAGGATATCAAGCATAGCTCACATGGCCGATATTATTGGTTAAGACGCGGAATTTGTCTTTTGAAACAATGCCGTTTATCTTCTCATTCAAAACGTC</canonical_amplicon>
		<polymorphic_amplicon>CGTTTTCTGGTTGACAATATAGAAACGCAATCCAAAAAAAGTTCATTGATTTTCTTCGTTTAAATCAGAAAATTGAWTTTTTTTTAATTAAGGTTCATTCGACTTGAAACTCACCAAGTATGCCCAATCGCATTTGACATTAGAAGAATGAATAGGATATCAAGCATAGCTCACATGGCCGATATTATTGGTTAAGACGCGGAATTTGTCTTTTGAAACAATGCCGTTTATCTTCTCATTCAAAACGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31398</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>470340</contig_pos>
        <strand></strand>
        <context>cataaaaaat[A/G]ttgtatgtca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAATGAGATCGTGTTCTAAAACTTCGCCAAAATATTACCCATAAAAAAT</left_flank>
        <right_flank>TTGTATGTCATATGAATTTGAGCGAAATTGGAGAGGGTCGATTTTGAGCA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAGTCCCACCCCTGCAAAAATATGGTGGTGGGGTGTATAAAAAGTTTTTTTCAAAAGTAAAATAATGATCAGATATTGATGTAGAACGTTTTTGGGCACTATTTTGAACATTTTTCGTATTGGCACTATACTAATATTCTTTCGTCTTCCTGGAAAAAAATCCAGTTTTTTTGCAAAAAAGCTATTTTTGGGATCAACAAATTCCCGTCCTGGAAAAAATTTCCATTATTCTATAAAAGTAAACTGCAAATTTGAATTTTACGTCAAAAAATACATTAGAAAATGTTTGCTATTGTTTAAATATTCTGGGTCCACTGCAAGTTTTAGGCCAAAATGTGCCAAAAAATGAGGTTTCCCCATGTCGGGGAGTACATGGCAACTAAATGTCGCCCAAAAAAATTGCTTCCAAGTTCATTTTCAGTGAAAAAATACGAGCTCTAGAAAAGCATGAATGAGATCGTGTTCTAAAACTTCGCCAAAATATTACCCATAAAAAATATTGTATGTCATATGAATTTGAGCGAAATTGGAGAGGGTCGATTTTGAGCAAAATTTAGTTGCCATGTACTCCCCCACATGATGAAACCTCATTTTTTGGCACATTTTGGCCTAAAACTTGCAGTGGACCCAGCATATTTAAACAAAAGCAAACATTTCCTAATGTATTTCTTGACGTAAAATCTACATTTGATGTTTAATGTTATAAAATAATGGAAATTTTTCCCAGGTCGTTAATTTTTTGGTCCCAAAAATAGCTTATTTGCAAAAAAACTGGATTTTTTTCCAGGAAGACGGAAGAATATTAGTATAGTGCCAATACGAAAAATGTTCGAAATAATGCCCAAAAACGTTCTACATCAAGATCTGATCATTATTTCACTTTTGAAAAAAAAAATTTCAGACACCTCACGATCATATTTTTGCAGGGGTGTGACAAGTCGGGACAAACTATATTTCATATACCTTAGAAGTCCATAAACACGCAGTATATGAAAAATC</canonical>
            <polymorphic>CTAGTCCCACCCCTGCAAAAATATGGTGGTGGGGTGTATAAAAAGTTTTTTTCAAAAGTAAAATAATGATCAGATATTGATGTAGAACGTTTTTGGGCACTATTTTGAACATTTTTCGTATTGGCACTATACTAATATTCTTTCGTCTTCCTGGAAAAAAATCCAGTTTTTTTGCAAAAAAGCTATTTTTGGGATCAACAAATTCCCGTCCTGGAAAAAATTTCCATTATTCTATAAAAGTAAACTGCAAATTTGAATTTTACGTCAAAAAATACATTAGAAAATGTTTGCTATTGTTTAAATATTCTGGGTCCACTGCAAGTTTTAGGCCAAAATGTGCCAAAAAATGAGGTTTCCCCATGTCGGGGAGTACATGGCAACTAAATGTCGCCCAAAAAAATTGCTTCCAAGTTCATTTTCAGTGAAAAAATACGAGCTCTAGAAAAGCATGAATGAGATCGTGTTCTAAAACTTCGCCAAAATATTACCCATAAAAAATRTTGTATGTCATATGAATTTGAGCGAAATTGGAGAGGGTCGATTTTGAGCAAAATTTAGTTGCCATGTACTCCCCCACATGATGAAACCTCATTTTTTGGCACATTTTGGCCTAAAACTTGCAGTGGACCCAGCATATTTAAACAAAAGCAAACATTTCCTAATGTATTTCTTGACGTAAAATCTACATTTGATGTTTAATGTTATAAAATAATGGAAATTTTTCCCAGGTCGTTAATTTTTTGGTCCCAAAAATAGCTTATTTGCAAAAAAACTGGATTTTTTTCCAGGAAGACGGAAGAATATTAGTATAGTGCCAATACGAAAAATGTTCGAAATAATGCCCAAAAACGTTCTACATCAAGATCTGATCATTATTTCACTTTTGAAAAAAAAAATTTCAGACACCTCACGATCATATTTTTGCAGGGGTGTGACAAGTCGGGACAAACTATATTTCATATACCTTAGAAGTCCATAAACACGCAGTATATGAAAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>303 198 180 167 136 16</canonical_bands>
                <polymorphic_bands>319 198 180 167 136</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTCCAAGTTCATTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>AAAACCCGTCAGACATAATTT</pcr_primer_p2>
		<pcr_amplicon_size>717</pcr_amplicon_size>
		<canonical_amplicon>GCTTCCAAGTTCATTTTCAGTGAAAAAATACGAGCTCTAGAAAAGCATGAATGAGATCGTGTTCTAAAACTTCGCCAAAATATTACCCATAAAAAATATTGTATGTCATATGAATTTG</canonical_amplicon>
		<polymorphic_amplicon>GCTTCCAAGTTCATTTTCAGTGAAAAAATACGAGCTCTAGAAAAGCATGAATGAGATCGTGTTCTAAAACTTCGCCAAAATATTACCCATAAAAAATRTTGTATGTCATATGAATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31399</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>470515</contig_pos>
        <strand></strand>
        <context>tatttcttga[C/T]gtaaaatcta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGACCCAGCATATTTAAACAAAAGCAAACATTTCCTAATGTATTTCTTGA</left_flank>
        <right_flank>GTAAAATCTACATTTGATGTTTAATGTTATAAAATAATGGAAATTTTTCC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAGCTATTTTTGGGATCAACAAATTCCCGTCCTGGAAAAAATTTCCATTATTCTATAAAAGTAAACTGCAAATTTGAATTTTACGTCAAAAAATACATTAGAAAATGTTTGCTATTGTTTAAATATTCTGGGTCCACTGCAAGTTTTAGGCCAAAATGTGCCAAAAAATGAGGTTTCCCCATGTCGGGGAGTACATGGCAACTAAATGTCGCCCAAAAAAATTGCTTCCAAGTTCATTTTCAGTGAAAAAATACGAGCTCTAGAAAAGCATGAATGAGATCGTGTTCTAAAACTTCGCCAAAATATTACCCATAAAAAATATTGTATGTCATATGAATTTGAGCGAAATTGGAGAGGGTCGATTTTGAGCAAAATTTAGTTGCCATGTACTCCCCCACATGATGAAACCTCATTTTTTGGCACATTTTGGCCTAAAACTTGCAGTGGACCCAGCATATTTAAACAAAAGCAAACATTTCCTAATGTATTTCTTGACGTAAAATCTACATTTGATGTTTAATGTTATAAAATAATGGAAATTTTTCCCAGGTCGTTAATTTTTTGGTCCCAAAAATAGCTTATTTGCAAAAAAACTGGATTTTTTTCCAGGAAGACGGAAGAATATTAGTATAGTGCCAATACGAAAAATGTTCGAAATAATGCCCAAAAACGTTCTACATCAAGATCTGATCATTATTTCACTTTTGAAAAAAAAAATTTCAGACACCTCACGATCATATTTTTGCAGGGGTGTGACAAGTCGGGACAAACTATATTTCATATACCTTAGAAGTCCATAAACACGCAGTATATGAAAAATCAGCTAGAAAAAACAAGTTTCAATTTTTCTGTGCAACGCTATTTTCCGTTCTGTCAGAGAATGTGTCTTAACTGTTTTCGAATATATGTAAGTTAGATAAAATTATGTCTGACGGGTTTTTTCTGCATAGATTTAAATTAAGTCGTATTCAGGTGTCAGTAGGGTTATTGTATTAC</canonical>
            <polymorphic>AAAAAAGCTATTTTTGGGATCAACAAATTCCCGTCCTGGAAAAAATTTCCATTATTCTATAAAAGTAAACTGCAAATTTGAATTTTACGTCAAAAAATACATTAGAAAATGTTTGCTATTGTTTAAATATTCTGGGTCCACTGCAAGTTTTAGGCCAAAATGTGCCAAAAAATGAGGTTTCCCCATGTCGGGGAGTACATGGCAACTAAATGTCGCCCAAAAAAATTGCTTCCAAGTTCATTTTCAGTGAAAAAATACGAGCTCTAGAAAAGCATGAATGAGATCGTGTTCTAAAACTTCGCCAAAATATTACCCATAAAAAATATTGTATGTCATATGAATTTGAGCGAAATTGGAGAGGGTCGATTTTGAGCAAAATTTAGTTGCCATGTACTCCCCCACATGATGAAACCTCATTTTTTGGCACATTTTGGCCTAAAACTTGCAGTGGACCCAGCATATTTAAACAAAAGCAAACATTTCCTAATGTATTTCTTGAYGTAAAATCTACATTTGATGTTTAATGTTATAAAATAATGGAAATTTTTCCCAGGTCGTTAATTTTTTGGTCCCAAAAATAGCTTATTTGCAAAAAAACTGGATTTTTTTCCAGGAAGACGGAAGAATATTAGTATAGTGCCAATACGAAAAATGTTCGAAATAATGCCCAAAAACGTTCTACATCAAGATCTGATCATTATTTCACTTTTGAAAAAAAAAATTTCAGACACCTCACGATCATATTTTTGCAGGGGTGTGACAAGTCGGGACAAACTATATTTCATATACCTTAGAAGTCCATAAACACGCAGTATATGAAAAATCAGCTAGAAAAAACAAGTTTCAATTTTTCTGTGCAACGCTATTTTCCGTTCTGTCAGAGAATGTGTCTTAACTGTTTTCGAATATATGTAAGTTAGATAAAATTATGTCTGACGGGTTTTTTCTGCATAGATTTAAATTAAGTCGTATTCAGGTGTCAGTAGGGTTATTGTATTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>412 326 175 87</canonical_bands>
                <polymorphic_bands>587 326 87</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTCCAAGTTCATTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>AAAACCCGTCAGACATAATTT</pcr_primer_p2>
		<pcr_amplicon_size>717</pcr_amplicon_size>
		<canonical_amplicon>GCTTCCAAGTTCATTTTCAGTGAAAAAATACGAGCTCTAGAAAAGCATGAATGAGATCGTGTTCTAAAACTTCGCCAAAATATTACCCATAAAAAATATTGTATGTCATATGAATTTGAGCGAAATTGGAGAGGGTCGATTTTGAGCAAAATTTAGTTGCCATGTACTCCCCCACATGATGAAACCTCATTTTTTGGCACATTTTGGCCTAAAACTTGCAGTGGACCCAGCATATTTAAACAAAAGCAAACATTTCCTAATGTATTTCTTGACGTAAAATCTACATTTGATGTTTAATGTTATAAAATAATGGAAATTTTTCCCAGGTCGTTAATTTTTTGGTCCCAAAAATAGCTTATTTGCAAAAAAACTGGATTTTTTTCCAGGAAGACGGAAGAATATTAGTATAGTGCCAATACGAAAAATGTTCGAAATAATGCCCAAAAACGTTCTACATCAAGATCTGATCATTATTTCACTTTTGAAAAAAAAAATTTCAGACACCTCACGATCATATTTTTGCAGGGGTGTGACAAGTCGGGACAAACTATATTTCATATACCTTAGAAGTCCATAAACACGCAGTATATGAAAAATCAGCTAGAAAAAACAAGTTTCAATTTTTCTGTGCAACGCTATTTTCCGTTCTGTCAGAGAATGTGTCTTAACTGTTTTCGAATATATGTAAGTTAGATAAAATTATGTCTGACGGGTTTT</canonical_amplicon>
		<polymorphic_amplicon>GCTTCCAAGTTCATTTTCAGTGAAAAAATACGAGCTCTAGAAAAGCATGAATGAGATCGTGTTCTAAAACTTCGCCAAAATATTACCCATAAAAAATATTGTATGTCATATGAATTTGAGCGAAATTGGAGAGGGTCGATTTTGAGCAAAATTTAGTTGCCATGTACTCCCCCACATGATGAAACCTCATTTTTTGGCACATTTTGGCCTAAAACTTGCAGTGGACCCAGCATATTTAAACAAAAGCAAACATTTCCTAATGTATTTCTTGAYGTAAAATCTACATTTGATGTTTAATGTTATAAAATAATGGAAATTTTTCCCAGGTCGTTAATTTTTTGGTCCCAAAAATAGCTTATTTGCAAAAAAACTGGATTTTTTTCCAGGAAGACGGAAGAATATTAGTATAGTGCCAATACGAAAAATGTTCGAAATAATGCCCAAAAACGTTCTACATCAAGATCTGATCATTATTTCACTTTTGAAAAAAAAAATTTCAGACACCTCACGATCATATTTTTGCAGGGGTGTGACAAGTCGGGACAAACTATATTTCATATACCTTAGAAGTCCATAAACACGCAGTATATGAAAAATCAGCTAGAAAAAACAAGTTTCAATTTTTCTGTGCAACGCTATTTTCCGTTCTGTCAGAGAATGTGTCTTAACTGTTTTCGAATATATGTAAGTTAGATAAAATTATGTCTGACGGGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31400</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>470600</contig_pos>
        <strand></strand>
        <context>aaaatagctt[A/T]tttgcaaaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAATGGAAATTTTTCCCAGGTCGTTAATTTTTTGGTCCCAAAAATAGCTT</left_flank>
        <right_flank>TTTGCAAAAAAACTGGATTTTTTTCCAGGAAGACGGAAGAATATTAGTAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACGTCAAAAAATACATTAGAAAATGTTTGCTATTGTTTAAATATTCTGGGTCCACTGCAAGTTTTAGGCCAAAATGTGCCAAAAAATGAGGTTTCCCCATGTCGGGGAGTACATGGCAACTAAATGTCGCCCAAAAAAATTGCTTCCAAGTTCATTTTCAGTGAAAAAATACGAGCTCTAGAAAAGCATGAATGAGATCGTGTTCTAAAACTTCGCCAAAATATTACCCATAAAAAATATTGTATGTCATATGAATTTGAGCGAAATTGGAGAGGGTCGATTTTGAGCAAAATTTAGTTGCCATGTACTCCCCCACATGATGAAACCTCATTTTTTGGCACATTTTGGCCTAAAACTTGCAGTGGACCCAGCATATTTAAACAAAAGCAAACATTTCCTAATGTATTTCTTGACGTAAAATCTACATTTGATGTTTAATGTTATAAAATAATGGAAATTTTTCCCAGGTCGTTAATTTTTTGGTCCCAAAAATAGCTTATTTGCAAAAAAACTGGATTTTTTTCCAGGAAGACGGAAGAATATTAGTATAGTGCCAATACGAAAAATGTTCGAAATAATGCCCAAAAACGTTCTACATCAAGATCTGATCATTATTTCACTTTTGAAAAAAAAAATTTCAGACACCTCACGATCATATTTTTGCAGGGGTGTGACAAGTCGGGACAAACTATATTTCATATACCTTAGAAGTCCATAAACACGCAGTATATGAAAAATCAGCTAGAAAAAACAAGTTTCAATTTTTCTGTGCAACGCTATTTTCCGTTCTGTCAGAGAATGTGTCTTAACTGTTTTCGAATATATGTAAGTTAGATAAAATTATGTCTGACGGGTTTTTTCTGCATAGATTTAAATTAAGTCGTATTCAGGTGTCAGTAGGGTTATTGTATTACAATTTTTGAGCATAACTTGTTTTTTTAAATTAATCATCAAAGCTAACATTTTCAGCCACAACACAATAAGCAACAGCAAGTACAG</canonical>
            <polymorphic>TACGTCAAAAAATACATTAGAAAATGTTTGCTATTGTTTAAATATTCTGGGTCCACTGCAAGTTTTAGGCCAAAATGTGCCAAAAAATGAGGTTTCCCCATGTCGGGGAGTACATGGCAACTAAATGTCGCCCAAAAAAATTGCTTCCAAGTTCATTTTCAGTGAAAAAATACGAGCTCTAGAAAAGCATGAATGAGATCGTGTTCTAAAACTTCGCCAAAATATTACCCATAAAAAATATTGTATGTCATATGAATTTGAGCGAAATTGGAGAGGGTCGATTTTGAGCAAAATTTAGTTGCCATGTACTCCCCCACATGATGAAACCTCATTTTTTGGCACATTTTGGCCTAAAACTTGCAGTGGACCCAGCATATTTAAACAAAAGCAAACATTTCCTAATGTATTTCTTGACGTAAAATCTACATTTGATGTTTAATGTTATAAAATAATGGAAATTTTTCCCAGGTCGTTAATTTTTTGGTCCCAAAAATAGCTTWTTTGCAAAAAAACTGGATTTTTTTCCAGGAAGACGGAAGAATATTAGTATAGTGCCAATACGAAAAATGTTCGAAATAATGCCCAAAAACGTTCTACATCAAGATCTGATCATTATTTCACTTTTGAAAAAAAAAATTTCAGACACCTCACGATCATATTTTTGCAGGGGTGTGACAAGTCGGGACAAACTATATTTCATATACCTTAGAAGTCCATAAACACGCAGTATATGAAAAATCAGCTAGAAAAAACAAGTTTCAATTTTTCTGTGCAACGCTATTTTCCGTTCTGTCAGAGAATGTGTCTTAACTGTTTTCGAATATATGTAAGTTAGATAAAATTATGTCTGACGGGTTTTTTCTGCATAGATTTAAATTAAGTCGTATTCAGGTGTCAGTAGGGTTATTGTATTACAATTTTTGAGCATAACTTGTTTTTTTAAATTAATCATCAAAGCTAACATTTTCAGCCACAACACAATAAGCAACAGCAAGTACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTCCAAGTTCATTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>AAAACCCGTCAGACATAATTT</pcr_primer_p2>
		<pcr_amplicon_size>717</pcr_amplicon_size>
		<canonical_amplicon>GCTTCCAAGTTCATTTTCAGTGAAAAAATACGAGCTCTAGAAAAGCATGAATGAGATCGTGTTCTAAAACTTCGCCAAAATATTACCCATAAAAAATATTGTATGTCATATGAATTTGAGCGAAATTGGAGAGGGTCGATTTTGAGCAAAATTTAGTTGCCATGTACTCCCCCACATGATGAAACCTCATTTTTTGGCACATTTTGGCCTAAAACTTGCAGTGGACCCAGCATATTTAAACAAAAGCAAACATTTCCTAATGTATTTCTTGACGTAAAATCTACATTTGATGTTTAATGTTATAAAATAATGGAAATTTTTCCCAGGTCGTTAATTTTTTGGTCCCAAAAATAGCTTATTTGCAAAAAAACTGGATTTTTTTCCAGGAAGACGGAAGAATATTAGTATAGTGCCAATACGAAAAATGTTCGAAATAATGCCCAAAAACGTTCTACATCAAGATCTGATCATTATTTCACTTTTGAAAAAAAAAATTTCAGACACCTCACGATCATATTTTTGCAGGGGTGTGACAAGTCGGGACAAACTATATTTCATATACCTTAGAAGTCCATAAACACGCAGTATATGAAAAATCAGCTAGAAAAAACAAGTTTCAATTTTTCTGTGCAACGCTATTTTCCGTTCTGTCAGAGAATGTGTCTTAACTGTTTTCGAATATATGTAAGTTAGATAAAATTATGTCTGACGGGTTTT</canonical_amplicon>
		<polymorphic_amplicon>GCTTCCAAGTTCATTTTCAGTGAAAAAATACGAGCTCTAGAAAAGCATGAATGAGATCGTGTTCTAAAACTTCGCCAAAATATTACCCATAAAAAATATTGTATGTCATATGAATTTGAGCGAAATTGGAGAGGGTCGATTTTGAGCAAAATTTAGTTGCCATGTACTCCCCCACATGATGAAACCTCATTTTTTGGCACATTTTGGCCTAAAACTTGCAGTGGACCCAGCATATTTAAACAAAAGCAAACATTTCCTAATGTATTTCTTGACGTAAAATCTACATTTGATGTTTAATGTTATAAAATAATGGAAATTTTTCCCAGGTCGTTAATTTTTTGGTCCCAAAAATAGCTTWTTTGCAAAAAAACTGGATTTTTTTCCAGGAAGACGGAAGAATATTAGTATAGTGCCAATACGAAAAATGTTCGAAATAATGCCCAAAAACGTTCTACATCAAGATCTGATCATTATTTCACTTTTGAAAAAAAAAATTTCAGACACCTCACGATCATATTTTTGCAGGGGTGTGACAAGTCGGGACAAACTATATTTCATATACCTTAGAAGTCCATAAACACGCAGTATATGAAAAATCAGCTAGAAAAAACAAGTTTCAATTTTTCTGTGCAACGCTATTTTCCGTTCTGTCAGAGAATGTGTCTTAACTGTTTTCGAATATATGTAAGTTAGATAAAATTATGTCTGACGGGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31401</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>472213</contig_pos>
        <strand>+</strand>
        <context>TGGTGTGTTA[A/G]ACAGATGTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATTCAACTGATCTCGGGCGGGCTTAAACCGCCGGTCTTTGGTGTGTTA</left_flank>
        <right_flank>ACAGATGTGATAACCACTACACCACGAGATCCCTGAGTAAGAAGAGGGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCGCCCAACTCACAACCGGCAGCCGCTACGAGAAGTTCCGGAAGAGTGAGTGCAGCCAAGAAGCGATACAGTGGACATGTTCTTCCGGGACCAACAATTGATCATAGAGTAAGTTGTTTGGTCGAAAATCTACACATTGTAGTTTATCTTTCAGAGTTTACTAGAAAAAAGAACAACATCAAAGCCTCGTTATGTTCGCGTGCCATAAACCTCACAATCAAACCATGATGTAATTAATTCATTTGTTATTCGAGTATTTATTTATTTATATGTTTCAGCAACTTTCTTAATATTTCAGCAACTTTCTATATATAATAGTTTTTCCAGCAATGTCTTTCGTTCAGGTTGTCATATCACTAATTCAATTCAATTAATATTAGAACTTGTATCGATATTATCAGTGAACAGTTTTTTCTTCTCTTTTTCACAGAAGAAAAAACAATAAAAAATATTCAACTGATCTCGGGCGGGCTTAAACCGCCGGTCTTTGGTGTGTTAAACAGATGTGATAACCACTACACCACGAGATCCCTGAGTAAGAAGAGGGAGAAGACGTATTATAAACAGGGAGCGTAGTGGAAACTAGCGGTAGTGAAAATAATGGTGGGCAGAAAAAAAATGAAATGCACGTAAAATTTTTCAACATATGCGTAAATGATTGCTAAAGAAACATTGCAGCAAATTAATGCATTATAATTTCTAAATTCACATGTACCACTAAAAATTTGAAACTAAAAATGGTTCCTAAAAATTCATAAATCACCAAACATGTATTTTAAACTATTCCGAATCTTATCTTGATATTTGTTAAATATCTTCACTGTTGTTTTGCTTCAGGCATATTTGAGAGTAGCTACAAAACCAATTCCTCCGCGTTTTCGTTACATATTCATGGTATTTGCTGACCATTACCGCGCGAATGCATTGTTCTGCACTTTCTCATACTGATAACAGCATGATAAGAGCCGCACGTTCTGGTTGAGAACAAATGAGGGAAGA</canonical>
            <polymorphic>ACCGCCCAACTCACAACCGGCAGCCGCTACGAGAAGTTCCGGAAGAGTGAGTGCAGCCAAGAAGCGATACAGTGGACATGTTCTTCCGGGACCAACAATTGATCATAGAGTAAGTTGTTTGGTCGAAAATCTACACATTGTAGTTTATCTTTCAGAGTTTACTAGAAAAAAGAACAACATCAAAGCCTCGTTATGTTCGCGTGCCATAAACCTCACAATCAAACCATGATGTAATTAATTCATTTGTTATTCGAGTATTTATTTATTTATATGTTTCAGCAACTTTCTTAATATTTCAGCAACTTTCTATATATAATAGTTTTTCCAGCAATGTCTTTCGTTCAGGTTGTCATATCACTAATTCAATTCAATTAATATTAGAACTTGTATCGATATTATCAGTGAACAGTTTTTTCTTCTCTTTTTCACAGAAGAAAAAACAATAAAAAATATTCAACTGATCTCGGGCGGGCTTAAACCGCCGGTCTTTGGTGTGTTARACAGATGTGATAACCACTACACCACGAGATCCCTGAGTAAGAAGAGGGAGAAGACGTATTATAAACAGGGAGCGTAGTGGAAACTAGCGGTAGTGAAAATAATGGTGGGCAGAAAAAAAATGAAATGCACGTAAAATTTTTCAACATATGCGTAAATGATTGCTAAAGAAACATTGCAGCAAATTAATGCATTATAATTTCTAAATTCACATGTACCACTAAAAATTTGAAACTAAAAATGGTTCCTAAAAATTCATAAATCACCAAACATGTATTTTAAACTATTCCGAATCTTATCTTGATATTTGTTAAATATCTTCACTGTTGTTTTGCTTCAGGCATATTTGAGAGTAGCTACAAAACCAATTCCTCCGCGTTTTCGTTACATATTCATGGTATTTGCTGACCATTACCGCGCGAATGCATTGTTCTGCACTTTCTCATACTGATAACAGCATGATAAGAGCCGCACGTTCTGGTTGAGAACAAATGAGGGAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>235 191 187 102 93 84 53 32 23</canonical_bands>
                <polymorphic_bands>235 210 191 102 93 84 53 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATAGTTTTTCCAGCAATGTCT</pcr_primer_p1>
		<pcr_primer_p2>GTCTTCTCCCTCTTCTTACTCAG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TAATAGTTTTTCCAGCAATGTCTTTCGTTCAGGTTGTCATATCACTAATTCAATTCAATTAATATTAGAACTTGTATCGATATTATCAGTGAACAGTTTTTTCTTCTCTTTTTCACAGAAGAAAAAACAATAAAAAATATTCAACTGATCTCGGGCGGGCTTAAACCGCCGGTCTTTGGTGTGTTAAACAGATGTGATAACCACTACACCACGAGATCCCTGAGTAAGAAGAGGGAGAAGAC</canonical_amplicon>
		<polymorphic_amplicon>TAATAGTTTTTCCAGCAATGTCTTTCGTTCAGGTTGTCATATCACTAATTCAATTCAATTAATATTAGAACTTGTATCGATATTATCAGTGAACAGTTTTTTCTTCTCTTTTTCACAGAAGAAAAAACAATAAAAAATATTCAACTGATCTCGGGCGGGCTTAAACCGCCGGTCTTTGGTGTGTTARACAGATGTGATAACCACTACACCACGAGATCCCTGAGTAAGAAGAGGGAGAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31402</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>472269</contig_pos>
        <strand>+</strand>
        <context>GGGAGAAGAC[A/G]TATTATAAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTGATAACCACTACACCACGAGATCCCTGAGTAAGAAGAGGGAGAAGAC</left_flank>
        <right_flank>TATTATAAACAGGGAGCGTAGTGGAAACTAGCGGTAGTGAAAATAATGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAGAAGCGATACAGTGGACATGTTCTTCCGGGACCAACAATTGATCATAGAGTAAGTTGTTTGGTCGAAAATCTACACATTGTAGTTTATCTTTCAGAGTTTACTAGAAAAAAGAACAACATCAAAGCCTCGTTATGTTCGCGTGCCATAAACCTCACAATCAAACCATGATGTAATTAATTCATTTGTTATTCGAGTATTTATTTATTTATATGTTTCAGCAACTTTCTTAATATTTCAGCAACTTTCTATATATAATAGTTTTTCCAGCAATGTCTTTCGTTCAGGTTGTCATATCACTAATTCAATTCAATTAATATTAGAACTTGTATCGATATTATCAGTGAACAGTTTTTTCTTCTCTTTTTCACAGAAGAAAAAACAATAAAAAATATTCAACTGATCTCGGGCGGGCTTAAACCGCCGGTCTTTGGTGTGTTAAACAGATGTGATAACCACTACACCACGAGATCCCTGAGTAAGAAGAGGGAGAAGACGTATTATAAACAGGGAGCGTAGTGGAAACTAGCGGTAGTGAAAATAATGGTGGGCAGAAAAAAAATGAAATGCACGTAAAATTTTTCAACATATGCGTAAATGATTGCTAAAGAAACATTGCAGCAAATTAATGCATTATAATTTCTAAATTCACATGTACCACTAAAAATTTGAAACTAAAAATGGTTCCTAAAAATTCATAAATCACCAAACATGTATTTTAAACTATTCCGAATCTTATCTTGATATTTGTTAAATATCTTCACTGTTGTTTTGCTTCAGGCATATTTGAGAGTAGCTACAAAACCAATTCCTCCGCGTTTTCGTTACATATTCATGGTATTTGCTGACCATTACCGCGCGAATGCATTGTTCTGCACTTTCTCATACTGATAACAGCATGATAAGAGCCGCACGTTCTGGTTGAGAACAAATGAGGGAAGAGCATATTATATTGCATAGTCTCTGTTTCTGATAATACTGCAGAATTCTAGATTATT</canonical>
            <polymorphic>CCAAGAAGCGATACAGTGGACATGTTCTTCCGGGACCAACAATTGATCATAGAGTAAGTTGTTTGGTCGAAAATCTACACATTGTAGTTTATCTTTCAGAGTTTACTAGAAAAAAGAACAACATCAAAGCCTCGTTATGTTCGCGTGCCATAAACCTCACAATCAAACCATGATGTAATTAATTCATTTGTTATTCGAGTATTTATTTATTTATATGTTTCAGCAACTTTCTTAATATTTCAGCAACTTTCTATATATAATAGTTTTTCCAGCAATGTCTTTCGTTCAGGTTGTCATATCACTAATTCAATTCAATTAATATTAGAACTTGTATCGATATTATCAGTGAACAGTTTTTTCTTCTCTTTTTCACAGAAGAAAAAACAATAAAAAATATTCAACTGATCTCGGGCGGGCTTAAACCGCCGGTCTTTGGTGTGTTAAACAGATGTGATAACCACTACACCACGAGATCCCTGAGTAAGAAGAGGGAGAAGACRTATTATAAACAGGGAGCGTAGTGGAAACTAGCGGTAGTGAAAATAATGGTGGGCAGAAAAAAAATGAAATGCACGTAAAATTTTTCAACATATGCGTAAATGATTGCTAAAGAAACATTGCAGCAAATTAATGCATTATAATTTCTAAATTCACATGTACCACTAAAAATTTGAAACTAAAAATGGTTCCTAAAAATTCATAAATCACCAAACATGTATTTTAAACTATTCCGAATCTTATCTTGATATTTGTTAAATATCTTCACTGTTGTTTTGCTTCAGGCATATTTGAGAGTAGCTACAAAACCAATTCCTCCGCGTTTTCGTTACATATTCATGGTATTTGCTGACCATTACCGCGCGAATGCATTGTTCTGCACTTTCTCATACTGATAACAGCATGATAAGAGCCGCACGTTCTGGTTGAGAACAAATGAGGGAAGAGCATATTATATTGCATAGTCTCTGTTTCTGATAATACTGCAGAATTCTAGATTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>498 342 85 75</canonical_bands>
                <polymorphic_bands>573 342 85</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGATGTGATAACCACTACACC</pcr_primer_p1>
		<pcr_primer_p2>TTTAGGAACCATTTTTAGTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACAGATGTGATAACCACTACACCACGAGATCCCTGAGTAAGAAGAGGGAGAAGACGTATTATAAACAGGGAGCGTAGTGGAAACTAGCGGTAGTGAAAATAATGGTGGGCAGAAAAAAAATGAAATGCACGTAAAATTTTTCAACATATGCGTAAATGATTGCTAAAGAAACATTGCAGCAAATTAATGCATTATAATTTCTAAATTCACATGTACCACTAAAAATTTGAAACTAAAAATGGTTCCTAAA</canonical_amplicon>
		<polymorphic_amplicon>ACAGATGTGATAACCACTACACCACGAGATCCCTGAGTAAGAAGAGGGAGAAGACRTATTATAAACAGGGAGCGTAGTGGAAACTAGCGGTAGTGAAAATAATGGTGGGCAGAAAAAAAATGAAATGCACGTAAAATTTTTCAACATATGCGTAAATGATTGCTAAAGAAACATTGCAGCAAATTAATGCATTATAATTTCTAAATTCACATGTACCACTAAAAATTTGAAACTAAAAATGGTTCCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31403</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>540650</contig_pos>
        <strand>+</strand>
        <context>TAAAAATTTT[C/T]AAACTTCGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTACACCTTCCACAGAAGGAACCAGCGATCCCAAAAAGATAAAAATTTT</left_flank>
        <right_flank>AAACTTCGGAAAGACTGGAAAGATGCTATCGCTTTCCCTAGGACTGACTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCTTGCAAAGTGTCGAGAAGATCTTGTCACGGCTTGCGAGTCAAACTTTGTGGAACTAGATTTTCGTACAGGGTATGTAAACTCTCGGAATACAAATTTTATTAGCTTAGATTGAATAAAATACCACAAATTATATTATTACCTCTCTCATGACAACTTTTCAGAAATGCCTACTGTCTTTATCCTCCCACACATTGCTCCCGATCACTCCTGCGAGAATCTAATGTAAGAAATCTATCAAACAGCGATGTGCAAAATACTCTTATTCAGGGATGCTTAGATGAGAGCTCAGCGTGTGGAGAAGCTTTCCCAATTCAATTCCGCGATTATGGTCAAGAGGAACTAGACGAGATAAAGCTGCAGAATGATAATGCAGCACAAGGGAAAGAATGGAAAGGATCATCAGTTACGTCTGATTTTAAAAAAACTCCAGGCAGTAAGAGGGCACCTACACCTTCCACAGAAGGAACCAGCGATCCCAAAAAGATAAAAATTTTCAAACTTCGGAAAGACTGGAAAGATGCTATCGCTTTCCCTAGGACTGACTCGGCTGTTCAAGATTCGCATTCAGACGGAGCTGATGATTCGCAACCGTCCACATGCAGCAAGGAAACAGCTCCAGCAATCAAATCAGCTTCGCAGAATGGAGTCCATGAATATCAACCACAGTCCAGTTACTACGATCCAAACGTTTCGACAACCGGCTACGATGGTTCTCTCCCATCATCATCGTCTTCAGGTGAAAACAAACGATACTATGACTTTGATAACTGTCCAGTTGATATGATGCGACTGTCACCGTCTGATAAACTTTTGGCGAGTTGTCAAAGATCCCAAAAGGACGATGGAGTGTTTAAGCGTCCTTATCTCAAATTACCTACTCCCCTTACAAACCGCACTCCATCTACTTCTAACGGAAATACACCCACTGTGATTCCACTCCCCCCCAGTTCAGCATCAAATCGGCCATGATGAATTAGTTTATAATAATCAAAATA</canonical>
            <polymorphic>TGGCTTGCAAAGTGTCGAGAAGATCTTGTCACGGCTTGCGAGTCAAACTTTGTGGAACTAGATTTTCGTACAGGGTATGTAAACTCTCGGAATACAAATTTTATTAGCTTAGATTGAATAAAATACCACAAATTATATTATTACCTCTCTCATGACAACTTTTCAGAAATGCCTACTGTCTTTATCCTCCCACACATTGCTCCCGATCACTCCTGCGAGAATCTAATGTAAGAAATCTATCAAACAGCGATGTGCAAAATACTCTTATTCAGGGATGCTTAGATGAGAGCTCAGCGTGTGGAGAAGCTTTCCCAATTCAATTCCGCGATTATGGTCAAGAGGAACTAGACGAGATAAAGCTGCAGAATGATAATGCAGCACAAGGGAAAGAATGGAAAGGATCATCAGTTACGTCTGATTTTAAAAAAACTCCAGGCAGTAAGAGGGCACCTACACCTTCCACAGAAGGAACCAGCGATCCCAAAAAGATAAAAATTTTYAAACTTCGGAAAGACTGGAAAGATGCTATCGCTTTCCCTAGGACTGACTCGGCTGTTCAAGATTCGCATTCAGACGGAGCTGATGATTCGCAACCGTCCACATGCAGCAAGGAAACAGCTCCAGCAATCAAATCAGCTTCGCAGAATGGAGTCCATGAATATCAACCACAGTCCAGTTACTACGATCCAAACGTTTCGACAACCGGCTACGATGGTTCTCTCCCATCATCATCGTCTTCAGGTGAAAACAAACGATACTATGACTTTGATAACTGTCCAGTTGATATGATGCGACTGTCACCGTCTGATAAACTTTTGGCGAGTTGTCAAAGATCCCAAAAGGACGATGGAGTGTTTAAGCGTCCTTATCTCAAATTACCTACTCCCCTTACAAACCGCACTCCATCTACTTCTAACGGAAATACACCCACTGTGATTCCACTCCCCCCCAGTTCAGCATCAAATCGGCCATGATGAATTAGTTTATAATAATCAAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTCCAGGCAGTAAGAG</pcr_primer_p1>
		<pcr_primer_p2>TGGACTGTGGTTGATATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTCCAGGCAGTAAGAGGGCACCTACACCTTCCACAGAAGGAACCAGCGATCCCAAAAAGATAAAAATTTTCAAACTTCGGAAAGACTGGAAAGATGCTATCGCTTTCCCTAGGACTGACTCGGCTGTTCAAGATTCGCATTCAGACGGAGCTGATGATTCGCAACCGTCCACATGCAGCAAGGAAACAGCTCCAGCAATCAAATCAGCTTCGCAGAATGGAGTCCATGAATATCAACCACAGTCCA</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTCCAGGCAGTAAGAGGGCACCTACACCTTCCACAGAAGGAACCAGCGATCCCAAAAAGATAAAAATTTTYAAACTTCGGAAAGACTGGAAAGATGCTATCGCTTTCCCTAGGACTGACTCGGCTGTTCAAGATTCGCATTCAGACGGAGCTGATGATTCGCAACCGTCCACATGCAGCAAGGAAACAGCTCCAGCAATCAAATCAGCTTCGCAGAATGGAGTCCATGAATATCAACCACAGTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31404</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>555088</contig_pos>
        <strand></strand>
        <context>TGACTCCGGA[T/C]TTTTTTGTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGTTTTTTCCAGCATATATGTAATATTAGGTTGGCAAGTTTGACTCCGGA</left_flank>
        <right_flank>TTTTTTGTACACAAACAATTCATTGTAAATTTGAAACCGTATAACCTCAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTACTAAATTCTTGTTTAACTCAATAAAAATCATTCGATAGTTTTTCTATCGCGAGAAAACATGTAACATCAGAAGAATTCAATTTTGAGAACTACCGCCTTCTCTAACAATTGCCCCTCTTTCTTTTATCACAATTGTCTCTCACTCGTTTCTGATACAACATATAATCGCGTGTGTTATCTAATCGAGGACAGTTGTCTGATGTTGCTCTACAATCTAGTGAATTCGACCGAAGATATGCCACTTGTGTATGTGTGTTTGTGCTCCACCGGATCCGAGGACCCATTGTTGTGTGTTTATTGACATGTACGAACGACCATTTGGTGGAGTCGGGGAGAGGAAAACCAGATGATGATGAAAATGCGGAAAAGATAAGAACGTTAAATTTGAAATTAGAAAAAGAGAAGAGAGTCATAAACACAAGAAATTATTTAATTAACATTTTCCTGTTTTTTCCAGCATATATGTAATATTAGGTTGGCAAGTTTGACTCCGGATTTTTTTGTACACAAACAATTCATTGTAAATTTGAAACCGTATAACCTCAATCCAAAATGTATTCACCATTATTATTCACAACTTCATGCCAACGTTCACGCACAGAATGGATGTCTCTATAGAAGAACTCCGCCGGCTGCGATACGAAATACTCGTCTACCCATTTTTTGATCTCATCGTTGTTTTTGGAGTATTTCTCATACAGTGCTTCATCGAGTGAAACACATAATAATCTGATAGAACTGTATCAGAGCTATATGGCGCGTGAGAAAAAACTTCCATCCCAGCTCTTCGATTTTCTGCGATGTGATCTTTACAACATGCGATCGGGCGTTGTCATGAAGCAACTTTGCCGACATCGTATCAATTCCTCTCCGACGAAGTGCTTTACCAACATGGTTAAGCAAATGTCAAGGGAGATCTGCCGTGCCTTTCCGACAAGAATTCAGAAGCTCAAACATACAGGATCTTTACTGTACCACCAAACACAAAGTATAATC</canonical>
            <polymorphic>ATTACTAAATTCTTGTTTAACTCAATAAAAATCATTCGATAGTTTTTCTATCGCGAGAAAACATGTAACATCAGAAGAATTCAATTTTGAGAACTACCGCCTTCTCTAACAATTGCCCCTCTTTCTTTTATCACAATTGTCTCTCACTCGTTTCTGATACAACATATAATCGCGTGTGTTATCTAATCGAGGACAGTTGTCTGATGTTGCTCTACAATCTAGTGAATTCGACCGAAGATATGCCACTTGTGTATGTGTGTTTGTGCTCCACCGGATCCGAGGACCCATTGTTGTGTGTTTATTGACATGTACGAACGACCATTTGGTGGAGTCGGGGAGAGGAAAACCAGATGATGATGAAAATGCGGAAAAGATAAGAACGTTAAATTTGAAATTAGAAAAAGAGAAGAGAGTCATAAACACAAGAAATTATTTAATTAACATTTTCCTGTTTTTTCCAGCATATATGTAATATTAGGTTGGCAAGTTTGACTCCGGAYTTTTTTGTACACAAACAATTCATTGTAAATTTGAAACCGTATAACCTCAATCCAAAATGTATTCACCATTATTATTCACAACTTCATGCCAACGTTCACGCACAGAATGGATGTCTCTATAGAAGAACTCCGCCGGCTGCGATACGAAATACTCGTCTACCCATTTTTTGATCTCATCGTTGTTTTTGGAGTATTTCTCATACAGTGCTTCATCGAGTGAAACACATAATAATCTGATAGAACTGTATCAGAGCTATATGGCGCGTGAGAAAAAACTTCCATCCCAGCTCTTCGATTTTCTGCGATGTGATCTTTACAACATGCGATCGGGCGTTGTCATGAAGCAACTTTGCCGACATCGTATCAATTCCTCTCCGACGAAGTGCTTTACCAACATGGTTAAGCAAATGTCAAGGGAGATCTGCCGTGCCTTTCCGACAAGAATTCAGAAGCTCAAACATACAGGATCTTTACTGTACCACCAAACACAAAGTATAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGAGAGTCATAAACACAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>GGATTTCCTCCTCAAATTGT</pcr_primer_p2>
		<pcr_amplicon_size>967</pcr_amplicon_size>
		<canonical_amplicon>GAAGAGAGTCATAAACACAAGAAATTATTTAATTAACATTTTCCTGTTTTTTCCAGCATATATGTAATATTAGGTTGGCAAGTTTGACTCCGGATTTTTTTGTACACAAACAAT</canonical_amplicon>
		<polymorphic_amplicon>GAAGAGAGTCATAAACACAAGAAATTATTTAATTAACATTTTCCTGTTTTTTCCAGCATATATGTAATATTAGGTTGGCAAGTTTGACTCCGGAYTTTTTTGTACACAAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31405</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>557188</contig_pos>
        <strand>+</strand>
        <context>CGCATGTTGA[C/G]CGTTAGGGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAAGTAAGAAAAGGAAAGCGAAGAAGATGGCGAAAATTTCGCATGTTGA</left_flank>
        <right_flank>CGTTAGGGATACACATGATTATTAACCCTACTAACCCTACTCAAATTCCC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTACAGACAAGTCACGTCATCTTTGGTGATTCTGTCAATTGAAGTTCCCGATGGATCGCACATTCTAAGGCAACGAGATCCGACCTTAAAAAATAATTTTTTTTGCAAATCAAAAAAAATAGACACCTGAAGTTGTGGAGCATTGAGATCCAAATCCAAGCAACATTTTCTGTTATCTCTATTTTGACTGGCGCAATACAAAATTGACGACAGGTGTTTGATACGGCATTGGCTATCTTTTCGCATGTTAGTCAGCTGTAAATACATGTTTTAGTTTTGCAAAACCAAAATGTGATTGATGGTTTTTCCCCGCGGAACAGTTGTGTTCGGTCAAAAACAACATGTCAAACGGTGGAAGAAAGAAAACTTGTCAATGGGTATTTTGATGGGTATTTGGTTTCTTTTCTGTGGAAAATGAAGTTGTTCGGGACTAGCAGTTTCAACTCTAAAAAGTAAGAAAAGGAAAGCGAAGAAGATGGCGAAAATTTCGCATGTTGACCGTTAGGGATACACATGATTATTAACCCTACTAACCCTACTCAAATTCCCGTGAATTTCAGTATTTTATCGAAAGAGCATTTAATCATGCTCTTAAGTTTTCATCTTCCTTCAATTTGAAAAAAAGAGTATCAAGGTTCACCATATTTCTAGTGACAGATTGGTCAGTCTCGTAGACACACATATGATGGCATTCCTCCGGAACATACAGCTGACAGCAAGCAAGGAACAGTTTATTGGCTATTCCTTTTGACGTACAAGGTTGGTAGTTGACTTCAGCTGTTCCGCACTTTCCCTGAAGCGAAAAAATCACATTGGAAACTTGATGGTGGAAGTTACTAAAGGTTTTCTTGGGGCCGATCGTCTATCATTCCCAACTTTCCTCGAGAAAACAGCAATTTTCCTATCTGGACAATTGGCCATAATGTATTTATAACACTGCCGAGGTAAACGGCATCCTGGCGTAATTGGAGATGTACAACAGGCACCTCAAGAAAAAGA</canonical>
            <polymorphic>TGTACAGACAAGTCACGTCATCTTTGGTGATTCTGTCAATTGAAGTTCCCGATGGATCGCACATTCTAAGGCAACGAGATCCGACCTTAAAAAATAATTTTTTTTGCAAATCAAAAAAAATAGACACCTGAAGTTGTGGAGCATTGAGATCCAAATCCAAGCAACATTTTCTGTTATCTCTATTTTGACTGGCGCAATACAAAATTGACGACAGGTGTTTGATACGGCATTGGCTATCTTTTCGCATGTTAGTCAGCTGTAAATACATGTTTTAGTTTTGCAAAACCAAAATGTGATTGATGGTTTTTCCCCGCGGAACAGTTGTGTTCGGTCAAAAACAACATGTCAAACGGTGGAAGAAAGAAAACTTGTCAATGGGTATTTTGATGGGTATTTGGTTTCTTTTCTGTGGAAAATGAAGTTGTTCGGGACTAGCAGTTTCAACTCTAAAAAGTAAGAAAAGGAAAGCGAAGAAGATGGCGAAAATTTCGCATGTTGASCGTTAGGGATACACATGATTATTAACCCTACTAACCCTACTCAAATTCCCGTGAATTTCAGTATTTTATCGAAAGAGCATTTAATCATGCTCTTAAGTTTTCATCTTCCTTCAATTTGAAAAAAAGAGTATCAAGGTTCACCATATTTCTAGTGACAGATTGGTCAGTCTCGTAGACACACATATGATGGCATTCCTCCGGAACATACAGCTGACAGCAAGCAAGGAACAGTTTATTGGCTATTCCTTTTGACGTACAAGGTTGGTAGTTGACTTCAGCTGTTCCGCACTTTCCCTGAAGCGAAAAAATCACATTGGAAACTTGATGGTGGAAGTTACTAAAGGTTTTCTTGGGGCCGATCGTCTATCATTCCCAACTTTCCTCGAGAAAACAGCAATTTTCCTATCTGGACAATTGGCCATAATGTATTTATAACACTGCCGAGGTAAACGGCATCCTGGCGTAATTGGAGATGTACAACAGGCACCTCAAGAAAAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>320 270 229 149 32</canonical_bands>
                <polymorphic_bands>378 320 270 32</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>497 273 230</canonical_bands>
                <polymorphic_bands>770 230</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>497 178 141 96 52 36</canonical_bands>
                <polymorphic_bands>638 178 96 52 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAAACTTGTCAATGGGTATTT</pcr_primer_p1>
		<pcr_primer_p2>AAGGAAGATGAAAACTTAAGAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAAACTTGTCAATGGGTATTTTGATGGGTATTTGGTTTCTTTTCTGTGGAAAATGAAGTTGTTCGGGACTAGCAGTTTCAACTCTAAAAAGTAAGAAAAGGAAAGCGAAGAAGATGGCGAAAATTTCGCATGTTGACCGTTAGGGATACACATGATTATTAACCCTACTAACCCTACTCAAATTCCCGTGAATTTCAGTATTTTATCGAAAGAGCATTTAATCATGCTCTTAAGTTTTCATCTTCCTT</canonical_amplicon>
		<polymorphic_amplicon>AGAAAACTTGTCAATGGGTATTTTGATGGGTATTTGGTTTCTTTTCTGTGGAAAATGAAGTTGTTCGGGACTAGCAGTTTCAACTCTAAAAAGTAAGAAAAGGAAAGCGAAGAAGATGGCGAAAATTTCGCATGTTGASCGTTAGGGATACACATGATTATTAACCCTACTAACCCTACTCAAATTCCCGTGAATTTCAGTATTTTATCGAAAGAGCATTTAATCATGCTCTTAAGTTTTCATCTTCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31406</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>572902</contig_pos>
        <strand>+</strand>
        <context>GCCAACAATT[C/T]TTTCTTCACG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATT</left_flank>
        <right_flank>TTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTACATAGCACTTAGCTGGACAAACAAGGTTAACTTCCAGAAACGACCAGAGCCGCACCTTGAGAGGTTTCAATTTGATTTTTTTGGCCGACCGCGACACTTAGGCTACACGGGCACTCGACGTTCACTTTGAATTTGGAAATTTATTGCCGGACACTTTGAATTTGTTTTCGAAACATAGTAAATTTTTAATTTTTTGAATTTTACCGCCAAATATTTTGAATTTGAAAATAAAGTATATTTTTTGATTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTTTTTCTTCACGAGACCCATATTCTTCTCGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTCACTTTTTCGACCTGCTGGATGGTGACCCTCTCGGGAGCTCTCGCCGTCTTCGTTTTTTTTTTTAAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTCTTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTCACTTTTTCGACCTGCTGGATGGTGACCCTCTCGGGAGCTCTCGCCGTCTTCGTTTTTTTTTTAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTTTTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTCACTTTTTCGACCTGCTGGATGGTGATCCTCTCGGGAGCTCTCGCCGTCTTTGGTTTTTGTTTTAAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTCTTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTACTTTTTCGACCTGCTGGATGGTGAGATGAAAATCAAGAAATATGGAAAT</canonical>
            <polymorphic>AGGTACATAGCACTTAGCTGGACAAACAAGGTTAACTTCCAGAAACGACCAGAGCCGCACCTTGAGAGGTTTCAATTTGATTTTTTTGGCCGACCGCGACACTTAGGCTACACGGGCACTCGACGTTCACTTTGAATTTGGAAATTTATTGCCGGACACTTTGAATTTGTTTTCGAAACATAGTAAATTTTTAATTTTTTGAATTTTACCGCCAAATATTTTGAATTTGAAAATAAAGTATATTTTTTGATTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTTTTTCTTCACGAGACCCATATTCTTCTCGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTCACTTTTTCGACCTGCTGGATGGTGACCCTCTCGGGAGCTCTCGCCGTCTTCGTTTTTTTTTTTAAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTYTTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTCACTTTTTCGACCTGCTGGATGGTGACCCTCTCGGGAGCTCTCGCCGTCTTCGTTTTTTTTTTAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTTTTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTCACTTTTTCGACCTGCTGGATGGTGATCCTCTCGGGAGCTCTCGCCGTCTTTGGTTTTTGTTTTAAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTCTTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTACTTTTTCGACCTGCTGGATGGTGAGATGAAAATCAAGAAATATGGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTCTTCTCGAGACCCATAAT</pcr_primer_p1>
		<pcr_primer_p2>GGATATTGGCCTAAAATGTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATTCTTCTCGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTCACTTTTTCGACCTGCTGGATGGTGACCCTCTCGGGAGCTCTCGCCGTCTTCGTTTTTTTTTTTAAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTCTTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCC</canonical_amplicon>
		<polymorphic_amplicon>TATTCTTCTCGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTCACTTTTTCGACCTGCTGGATGGTGACCCTCTCGGGAGCTCTCGCCGTCTTCGTTTTTTTTTTTAAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTYTTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31407</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>573184</contig_pos>
        <strand>+</strand>
        <context>TGGATGGTGA[C/T]CCTCTCGGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTAGGCCAATATCCTCATTTTTTCACTTTTTCGACCTGCTGGATGGTGA</left_flank>
        <right_flank>CCTCTCGGGAGCTCTCGCCGTCTTTGGTTTTTGTTTTAAATCAGTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTTTCTTCACGAGACCCATATTCTTCTCGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTCACTTTTTCGACCTGCTGGATGGTGACCCTCTCGGGAGCTCTCGCCGTCTTCGTTTTTTTTTTTAAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTCTTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTCACTTTTTCGACCTGCTGGATGGTGACCCTCTCGGGAGCTCTCGCCGTCTTCGTTTTTTTTTTAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTTTTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTCACTTTTTCGACCTGCTGGATGGTGATCCTCTCGGGAGCTCTCGCCGTCTTTGGTTTTTGTTTTAAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTCTTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTACTTTTTCGACCTGCTGGATGGTGAGATGAAAATCAAGAAATATGGAAATTTAATTTGAGATGCAAACTTATTGATGGAGAATCAAAGAAGAATATGATAAGTTACAAAGGAAAAGAACTGCTCTTTTCGCATAAACAGGTAAGTTTCTTTTCAGGGGTTTGAAATAATTTTTCTGCTGCAATTCCAGCTCATTCTTTTCCATGACTCCAATTCAAAAATATGTTGTGAAAAAAATATAATTGACATTTTGGAAATTCCAAGAACCATAGAAATGGATTGTTTTGAAAAAGTCCTCCAAATTGCTCATGGTGTTCAGCTGAAACTTGATGGT</canonical>
            <polymorphic>AATTTTTTCTTCACGAGACCCATATTCTTCTCGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTCACTTTTTCGACCTGCTGGATGGTGACCCTCTCGGGAGCTCTCGCCGTCTTCGTTTTTTTTTTTAAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTCTTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTCACTTTTTCGACCTGCTGGATGGTGACCCTCTCGGGAGCTCTCGCCGTCTTCGTTTTTTTTTTAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTTTTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTCACTTTTTCGACCTGCTGGATGGTGAYCCTCTCGGGAGCTCTCGCCGTCTTTGGTTTTTGTTTTAAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTCTTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTACTTTTTCGACCTGCTGGATGGTGAGATGAAAATCAAGAAATATGGAAATTTAATTTGAGATGCAAACTTATTGATGGAGAATCAAAGAAGAATATGATAAGTTACAAAGGAAAAGAACTGCTCTTTTCGCATAAACAGGTAAGTTTCTTTTCAGGGGTTTGAAATAATTTTTCTGCTGCAATTCCAGCTCATTCTTTTCCATGACTCCAATTCAAAAATATGTTGTGAAAAAAATATAATTGACATTTTGGAAATTCCAAGAACCATAGAAATGGATTGTTTTGAAAAAGTCCTCCAAATTGCTCATGGTGTTCAGCTGAAACTTGATGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATNNNNATC</site>
                <isoschizomers>
                    <enzyme>BsaBI</enzyme>
                    <enzyme>Bse8I</enzyme>
                    <enzyme>BseJI</enzyme>
                    <enzyme>BsiBI</enzyme>
                    <enzyme>BsrBRI</enzyme>
                    <enzyme>MamI</enzyme>
                </isoschizomers>
                <canonical_bands>496 302 202</canonical_bands>
                <polymorphic_bands>698 302</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTATTGTTTGGAACATTTTAGG</pcr_primer_p1>
		<pcr_primer_p2>AGCAGGTCGAAAAAGTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTCACTTTTTCGACCTGCTGGATGGTGACCCTCTCGGGAGCTCTCGCCGTCTTCGTTTTTTTTTTTAAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTCTTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTCACTTTTTCGACCTGCTGGATGGTGACCCTCTCGGGAGCTCTCGCCGTCTTCGTTTTTTTTTTAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTTTTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTCACTTTTTCGACCTGCTGGATGGTGATCCTCTCGGGAGCTCTCGCCGTCTTTGGTTTTTGTTTTAAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTCTTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTACTTTTTCGACCTGCT</canonical_amplicon>
		<polymorphic_amplicon>GTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTCACTTTTTCGACCTGCTGGATGGTGACCCTCTCGGGAGCTCTCGCCGTCTTCGTTTTTTTTTTTAAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTCTTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTCACTTTTTCGACCTGCTGGATGGTGACCCTCTCGGGAGCTCTCGCCGTCTTCGTTTTTTTTTTAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTTTTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTCACTTTTTCGACCTGCTGGATGGTGAYCCTCTCGGGAGCTCTCGCCGTCTTTGGTTTTTGTTTTAAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTCTTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTACTTTTTCGACCTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31408</snp_id>
        <super_contig>c006100824.Contig1</super_contig>
        <contig_pos>573209</contig_pos>
        <strand>+</strand>
        <context>TCGCCGTCTT[C/T]GGTTTTTGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTTTTTCGACCTGCTGGATGGTGATCCTCTCGGGAGCTCTCGCCGTCTT</left_flank>
        <right_flank>GGTTTTTGTTTTAAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCTCGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTCACTTTTTCGACCTGCTGGATGGTGACCCTCTCGGGAGCTCTCGCCGTCTTCGTTTTTTTTTTTAAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTCTTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTCACTTTTTCGACCTGCTGGATGGTGACCCTCTCGGGAGCTCTCGCCGTCTTCGTTTTTTTTTTAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTTTTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTCACTTTTTCGACCTGCTGGATGGTGATCCTCTCGGGAGCTCTCGCCGTCTTTGGTTTTTGTTTTAAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTCTTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTACTTTTTCGACCTGCTGGATGGTGAGATGAAAATCAAGAAATATGGAAATTTAATTTGAGATGCAAACTTATTGATGGAGAATCAAAGAAGAATATGATAAGTTACAAAGGAAAAGAACTGCTCTTTTCGCATAAACAGGTAAGTTTCTTTTCAGGGGTTTGAAATAATTTTTCTGCTGCAATTCCAGCTCATTCTTTTCCATGACTCCAATTCAAAAATATGTTGTGAAAAAAATATAATTGACATTTTGGAAATTCCAAGAACCATAGAAATGGATTGTTTTGAAAAAGTCCTCCAAATTGCTCATGGTGTTCAGCTGAAACTTGATGGTGAATAGATCTTTCATTTTTCCAACA</canonical>
            <polymorphic>TCTTCTCGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTCACTTTTTCGACCTGCTGGATGGTGACCCTCTCGGGAGCTCTCGCCGTCTTCGTTTTTTTTTTTAAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTCTTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTCACTTTTTCGACCTGCTGGATGGTGACCCTCTCGGGAGCTCTCGCCGTCTTCGTTTTTTTTTTAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTTTTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTCACTTTTTCGACCTGCTGGATGGTGATCCTCTCGGGAGCTCTCGCCGTCTTYGGTTTTTGTTTTAAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTCTTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTACTTTTTCGACCTGCTGGATGGTGAGATGAAAATCAAGAAATATGGAAATTTAATTTGAGATGCAAACTTATTGATGGAGAATCAAAGAAGAATATGATAAGTTACAAAGGAAAAGAACTGCTCTTTTCGCATAAACAGGTAAGTTTCTTTTCAGGGGTTTGAAATAATTTTTCTGCTGCAATTCCAGCTCATTCTTTTCCATGACTCCAATTCAAAAATATGTTGTGAAAAAAATATAATTGACATTTTGGAAATTCCAAGAACCATAGAAATGGATTGTTTTGAAAAAGTCCTCCAAATTGCTCATGGTGTTCAGCTGAAACTTGATGGTGAATAGATCTTTCATTTTTCCAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCACTTTTTCGACCTG</pcr_primer_p1>
		<pcr_primer_p2>ATTTCCATATTTCTTGATTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCACTTTTTCGACCTGCTGGATGGTGACCCTCTCGGGAGCTCTCGCCGTCTTCGTTTTTTTTTTTAAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTCTTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTCACTTTTTCGACCTGCTGGATGGTGACCCTCTCGGGAGCTCTCGCCGTCTTCGTTTTTTTTTTAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTTTTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTCACTTTTTCGACCTGCTGGATGGTGATCCTCTCGGGAGCTCTCGCCGTCTTTGGTTTTTGTTTTAAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTCTTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTACTTTTTCGACCTGCTGGATGGTGAGATGAAAATCAAGAAATATGGAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCACTTTTTCGACCTGCTGGATGGTGACCCTCTCGGGAGCTCTCGCCGTCTTCGTTTTTTTTTTTAAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTCTTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTCACTTTTTCGACCTGCTGGATGGTGACCCTCTCGGGAGCTCTCGCCGTCTTCGTTTTTTTTTTAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTTTTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTCACTTTTTCGACCTGCTGGATGGTGATCCTCTCGGGAGCTCTCGCCGTCTTYGGTTTTTGTTTTAAATCAGTTTTTTTCAAATTCGAATTTTGAATTTTGAATTTTGAAATTCAAAATTCCCGCCAACAATTCTTTCTTCACGAGACCCATAATGTTATTGTTTGGAACATTTTAGGCCAATATCCTCATTTTTTACTTTTTCGACCTGCTGGATGGTGAGATGAAAATCAAGAAATATGGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31409</snp_id>
        <super_contig>c006201094.Contig1</super_contig>
        <contig_pos>30410</contig_pos>
        <strand>+</strand>
        <context>GTGTTTTTCA[A/G]AAAAACTCGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAACAGTAAGTTCAGAATTATTGGAAGGTATTAGTTTTGGTGTTTTTCA</left_flank>
        <right_flank>AAAAACTCGGAAACAGAAGGAATCGAGAACAGCACCATTCTAGTGCCGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGCCTAAATTTCTACATTTCATTTTTTTGCTTTATTTTTAAACACTTCAATCACTTTTGTACCATATTGTTAGAATACTTTCAGGTTTGACTTATCTAGCTATTCACCCAACAACTTATTGATAAAATTGCATTGATTGATTACTTCTTATAAAATTCCGAAGAGTTTCAACAGTTCTTTCTTATTTCTATTTCCTATCGAGGTCCCTTTTCCATTTCTGAATCTTTATTATAGATGGATGAGACACGATTTGAAGAGGACGACTACGAGGGAGCAGCCAACAAAAAATACACGTTCTTCGTGATTGATGGAAGTTCGGCGATGTTCGAGACCTCGAAACCCGGAGAAGAATCAGAGTTCAAGACTGCGTTGAAGCTGATGCTCGATGAAATGGTCCGTGTGTGTTGCTCCAGAAGTCTGAACAACCACATCGGTGTAATTGTAACAGGAACAGTAAGTTCAGAATTATTGGAAGGTATTAGTTTTGGTGTTTTTCAGAAAAACTCGGAAACAGAAGGAATCGAGAACAGCACCATTCTAGTGCCGATGGGTGTTCTTGGACAGGAAGAAGTCAATACAATCAAAGAGATTATTGATGAAGGTGAGGGGTTGTCTTATAAGTTTTTGTTTCAGTTCGAAATTTCAGAGGATCTTCTGTCTGCTGTTACCAATATCACTGGGGGCCATCACGAATCCGACCTGTCGAATGTTCTCAACTACTGCAAACGTGTGTTCGCCAGTTGCCCAAACACACGACACCAATCTGTCATTTATCTGACGAACAATCGTAACCCATTTGGACGAGATAATTTCTGGGAATCGTCGTATTTCGTGAGTGATACTCTTATTTTTGCCAAGTCTACGAGTTGAGTTTCAGAACCGTACCAAAACCGCTGTCAAGAAAATAATCGGTTTAGGTCAACGCAAAACGCTCGGAGAGTTTTCGGTGATAATTCTGCCGGAGGATGGATACAAACCACAGGAGAAGGAAGAGAAAA</canonical>
            <polymorphic>GAAGCCTAAATTTCTACATTTCATTTTTTTGCTTTATTTTTAAACACTTCAATCACTTTTGTACCATATTGTTAGAATACTTTCAGGTTTGACTTATCTAGCTATTCACCCAACAACTTATTGATAAAATTGCATTGATTGATTACTTCTTATAAAATTCCGAAGAGTTTCAACAGTTCTTTCTTATTTCTATTTCCTATCGAGGTCCCTTTTCCATTTCTGAATCTTTATTATAGATGGATGAGACACGATTTGAAGAGGACGACTACGAGGGAGCAGCCAACAAAAAATACACGTTCTTCGTGATTGATGGAAGTTCGGCGATGTTCGAGACCTCGAAACCCGGAGAAGAATCAGAGTTCAAGACTGCGTTGAAGCTGATGCTCGATGAAATGGTCCGTGTGTGTTGCTCCAGAAGTCTGAACAACCACATCGGTGTAATTGTAACAGGAACAGTAAGTTCAGAATTATTGGAAGGTATTAGTTTTGGTGTTTTTCARAAAAACTCGGAAACAGAAGGAATCGAGAACAGCACCATTCTAGTGCCGATGGGTGTTCTTGGACAGGAAGAAGTCAATACAATCAAAGAGATTATTGATGAAGGTGAGGGGTTGTCTTATAAGTTTTTGTTTCAGTTCGAAATTTCAGAGGATCTTCTGTCTGCTGTTACCAATATCACTGGGGGCCATCACGAATCCGACCTGTCGAATGTTCTCAACTACTGCAAACGTGTGTTCGCCAGTTGCCCAAACACACGACACCAATCTGTCATTTATCTGACGAACAATCGTAACCCATTTGGACGAGATAATTTCTGGGAATCGTCGTATTTCGTGAGTGATACTCTTATTTTTGCCAAGTCTACGAGTTGAGTTTCAGAACCGTACCAAAACCGCTGTCAAGAAAATAATCGGTTTAGGTCAACGCAAAACGCTCGGAGAGTTTTCGGTGATAATTCTGCCGGAGGATGGATACAAACCACAGGAGAAGGAAGAGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>161 138 135 100 80 65 63 60 59 51 43 35 10</canonical_bands>
                <polymorphic_bands>161 138 135 100 80 65 63 60 59 51 45 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACATCGGTGTAATTGTAACAG</pcr_primer_p1>
		<pcr_primer_p2>ATATTGGTAACAGCAGACAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CACATCGGTGTAATTGTAACAGGAACAGTAAGTTCAGAATTATTGGAAGGTATTAGTTTTGGTGTTTTTCAGAAAAACTCGGAAACAGAAGGAATCGAGAACAGCACCATTCTAGTGCCGATGGGTGTTCTTGGACAGGAAGAAGTCAATACAATCAAAGAGATTATTGATGAAGGTGAGGGGTTGTCTTATAAGTTTTTGTTTCAGTTCGAAATTTCAGAGGATCTTCTGTCTGCTGTTACCAATAT</canonical_amplicon>
		<polymorphic_amplicon>CACATCGGTGTAATTGTAACAGGAACAGTAAGTTCAGAATTATTGGAAGGTATTAGTTTTGGTGTTTTTCARAAAAACTCGGAAACAGAAGGAATCGAGAACAGCACCATTCTAGTGCCGATGGGTGTTCTTGGACAGGAAGAAGTCAATACAATCAAAGAGATTATTGATGAAGGTGAGGGGTTGTCTTATAAGTTTTTGTTTCAGTTCGAAATTTCAGAGGATCTTCTGTCTGCTGTTACCAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31410</snp_id>
        <super_contig>c006201094.Contig1</super_contig>
        <contig_pos>59957</contig_pos>
        <strand>+</strand>
        <context>CTCTATGACG[A/C]TTTTTTTGMM</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAGAGAGAGAGAGAGAGAGAAAAGGAGTCAGCTCTAGAGCTCTATGACG</left_flank>
        <right_flank>TTTTTTTGAAACAGAAACCCCCAGAAACATGGAGCAATTGGAATGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAAGGAAGAGTACAAGATCTCATGAGATGAAAAAGAAAAAAGAAACATCTGCTCGGAGAGAGGCTTGTCCAGGACTGGCCTCAGGGGTTGTGCTGGCTCTTTTGGCTGGAATGGAAAAGAAAAAAACCGAGAAGGCATAGAAGGAATGGCGGCTGAAAATGAGGATGTGGGCAGAAGAAGAAGAAGAGGAATGGAACCGGAAGTACAAGGAAGATTACTGTGGATCCTCATTATGAATTTTAATTGCTCATGCAAATAGAAATCAAAGTTTTTTAGGTCTGAAATTCTAAACAGGGATCCGCACGAGTACTGTAGCCCAAAATGCTACATCATAAAAAAAACTCGAACATGCTTCTCTTCCATTTTTAATCGTTTGGTTTCCTGCTGTGTTGCGAATTANAAAAAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGGAGTCAGCTCTAGAGCTCTATGACGTTTTTTTTGAAACAGAAACCCCCAGAAACATGGAGCAATTGGAATGAAAAAATGGGAGGAAAGAAGTGGAATTGAATTCATATTCAACCAAGTGACAAGAAATTAAATGAAAACGGGTCGGATGAGTATATTTGACATTTTTGATGAATAACTGAACGGAAATTGGAAAACGGACGAAAAATATGGTAGACAGAAAAAAGGAAATTGAGTTTATATAGTGGAAAAATGCAAGAAAAGGGCATTCAAAGGATATGTACATTATGATATGATCAGTCAAGGAATACAAGTGATTCTGAAAATCAAAATTAATGGTGTCATTTCATTTTTTAGTCAACTTACAACTAAAAATACCAAAAACCACAGTGTTTACTTTGATGAGGTCAGAAGTAACGAGATAAATCAGAATCGTCATTTTGGGGGTTTCAAGGAAGTCTGTATTTTACAATTTCAGCCCCAGATCTTGTAAAACCTATAATAGAATGAGCCCTTTATCTTTTAACT</canonical>
            <polymorphic>ACAAGGAAGAGTACAAGATCTCATGAGATGAAAAAGAAAAAAGAAACATCTGCTCGGAGAGAGGCTTGTCCAGGACTGGCCTCAGGGGTTGTGCTGGCTCTTTTGGCTGGAATGGAAAAGAAAAAAACCGAGAAGGCATAGAAGGAATGGCGGCTGAAAATGAGGATGTGGGCAGAAGAAGAAGAAGAGGAATGGAACCGGAAGTACAAGGAAGATTACTGTGGATCCTCATTATGAATTTTAATTGCTCATGCAAATAGAAATCAAAGTTTTTTAGGTCTGAAATTCTAAACAGGGATCCGCACGAGTACTGTAGCCCAAAATGCTACATCATAAAAAAAACTCGAACATGCTTCTCTTCCATTTTTAATCGTTTGGTTTCCTGCTGTGTTGCGAATTANAAAAAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGGAGTCAGCTCTAGAGCTCTATGACGMTTTTTTTGAAACAGAAACCCCCAGAAACATGGAGCAATTGGAATGAAAAAATGGGAGGAAAGAAGTGGAATTGAATTCATATTCAACCAAGTGACAAGAAATTAAATGAAAACGGGTCGGATGAGTATATTTGACATTTTTGATGAATAACTGAACGGAAATTGGAAAACGGACGAAAAATATGGTAGACAGAAAAAAGGAAATTGAGTTTATATAGTGGAAAAATGCAAGAAAAGGGCATTCAAAGGATATGTACATTATGATATGATCAGTCAAGGAATACAAGTGATTCTGAAAATCAAAATTAATGGTGTCATTTCATTTTTTAGTCAACTTACAACTAAAAATACCAAAAACCACAGTGTTTACTTTGATGAGGTCAGAAGTAACGAGATAAATCAGAATCGTCATTTTGGGGGTTTCAAGGAAGTCTGTATTTTACAATTTCAGCCCCAGATCTTGTAAAACCTATAATAGAATGAGCCCTTTATCTTTTAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCTCTTCCATTTTTAATCGT</pcr_primer_p1>
		<pcr_primer_p2>ATTTCTTGTCACTTGGTTGAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCTCTTCCATTTTTAATCGTTTGGTTTCCTGCTGTGTTGCGAATTANAAAAAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGGAGTCAGCTCTAGAGCTCTATGACGTTTTTTTTGAAACAGAAACCCCCAGAAACATGGAGCAATTGGAATGAAAAAATGGGAGGAAAGAAGTGGAATTGAATTCATATTCAACCAAGTGACAAGAAAT</canonical_amplicon>
		<polymorphic_amplicon>CTTCTCTTCCATTTTTAATCGTTTGGTTTCCTGCTGTGTTGCGAATTANAAAAAATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGGAGTCAGCTCTAGAGCTCTATGACGMTTTTTTTGAAACAGAAACCCCCAGAAACATGGAGCAATTGGAATGAAAAAATGGGAGGAAAGAAGTGGAATTGAATTCATATTCAACCAAGTGACAAGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31411</snp_id>
        <super_contig>c006201094.Contig1</super_contig>
        <contig_pos>118087</contig_pos>
        <strand></strand>
        <context>atttttgata[T/G]tataataaac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CTCCTATGAAAGATATCAAAAAGTGGTAAACTGGCAAAATATTTTTGATA</left_flank>
        <right_flank>TATAATAAACATTTTATTAGTACAGCTTTTTTTACATCTTTGACAGAAAC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTTGGAAATTCTAACCCTAGAAGCTTCTGTACAATTCAACAAAAAAAATTTTGGGTACAAAAAGACGAGTGTTTATAGAGTTGAAAGGGAGAAGGGGGAGATGTGTTCGCATGACTAATTGCCACCCGTAACGTGCACATTGTTTGGGTTGACTGATAAGGAGATGAGAGGAGAGAGTGTTGAAGATGAGGAGACGCAGAGATGTCAAAAAGGAAAGAAAGGTTGACATCTGGGTGATAGGTAAAGAGAAGAAGAAAGAGACCGAAATGAGAGAAGAAGATGTACAGTGTGGGAAAAAAATGTGTAAGAAGAAGAAGAGAAGTGATTATGGAGAGAGTGGGAGAAGACAGGGGAAACTAAATATGTGGTGAATATAAAAGCTTGGGTTTGGTTATTTCTTTAATACGATGACCCCTTAACTTTCAACTTTAAGCCAATTTATCTCGACTCCTATGAAAGATATCAAAAAGTGGTAAACTGGCAAAATATTTTTGATATTATAATAAACATTTTATTAGTACAGCTTTTTTTACATCTTTGACAGAAACCGAGAAAAATTGGCTCAAAGCCAGGGACCCTTCTATTTTAGGTTTTTGATTCATCAGAAAACAAGATTTTTCGAAAGCCAATTTTCAGTCAATAGTCTCAAATTTCTTACACATTGGAAACTTCTATACAATCAATCAGAATAGCATTCATATATACTGAGGTAGCTATGTCAGATAGGCAAATTCGGTTTTAATCCGATTCCTATTCGAAGCTGCATAAAACCAAGAGATGGAGAGAATTAGACGGATTAAGGATTAACCGGAAAAGGAAGGGGCGTGGCCTGAATTTATTTCATCTAGACTAAAGATGGGACCTTCGAAAAACAAAGTTTCTGGAGCAGGAAAAAAAAAGGAAAAAGAGCCGAAAAATGAGTGATGGGAAGAAGAAAAGATGACAAATTGAAGGGAGAAAAAAAGGACATCTTCTAGTGCTTTTCTTATGAATTTCTA</canonical>
            <polymorphic>GGTTTGGAAATTCTAACCCTAGAAGCTTCTGTACAATTCAACAAAAAAAATTTTGGGTACAAAAAGACGAGTGTTTATAGAGTTGAAAGGGAGAAGGGGGAGATGTGTTCGCATGACTAATTGCCACCCGTAACGTGCACATTGTTTGGGTTGACTGATAAGGAGATGAGAGGAGAGAGTGTTGAAGATGAGGAGACGCAGAGATGTCAAAAAGGAAAGAAAGGTTGACATCTGGGTGATAGGTAAAGAGAAGAAGAAAGAGACCGAAATGAGAGAAGAAGATGTACAGTGTGGGAAAAAAATGTGTAAGAAGAAGAAGAGAAGTGATTATGGAGAGAGTGGGAGAAGACAGGGGAAACTAAATATGTGGTGAATATAAAAGCTTGGGTTTGGTTATTTCTTTAATACGATGACCCCTTAACTTTCAACTTTAAGCCAATTTATCTCGACTCCTATGAAAGATATCAAAAAGTGGTAAACTGGCAAAATATTTTTGATAKTATAATAAACATTTTATTAGTACAGCTTTTTTTACATCTTTGACAGAAACCGAGAAAAATTGGCTCAAAGCCAGGGACCCTTCTATTTTAGGTTTTTGATTCATCAGAAAACAAGATTTTTCGAAAGCCAATTTTCAGTCAATAGTCTCAAATTTCTTACACATTGGAAACTTCTATACAATCAATCAGAATAGCATTCATATATACTGAGGTAGCTATGTCAGATAGGCAAATTCGGTTTTAATCCGATTCCTATTCGAAGCTGCATAAAACCAAGAGATGGAGAGAATTAGACGGATTAAGGATTAACCGGAAAAGGAAGGGGCGTGGCCTGAATTTATTTCATCTAGACTAAAGATGGGACCTTCGAAAAACAAAGTTTCTGGAGCAGGAAAAAAAAAGGAAAAAGAGCCGAAAAATGAGTGATGGGAAGAAGAAAAGATGACAAATTGAAGGGAGAAAAAAAGGACATCTTCTAGTGCTTTTCTTATGAATTTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATAAAAGCTTGGGTTTGGTTA</pcr_primer_p1>
		<pcr_primer_p2>GAAAAATCTTGTTTTCTGATGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATATAAAAGCTTGGGTTTGGTTATTTCTTTAATACGATGACCCCTTAACTTTCAACTTTAAGCCAATTTATCTCGACTCCTATGAAAGATATCAAAAAGTGGTAAACTGGCAAAATATTTTTGATATTATAATAAACATTTTATTAGTACAGCTTTTTTTACATCTTTGACAGAAACCGAGAAAAATTGGCTCAAAGCCAGGGACCCTTCTATTTTAGGTTTTTGATTCATCAGAAAACAAGATTTTTC</canonical_amplicon>
		<polymorphic_amplicon>ATATAAAAGCTTGGGTTTGGTTATTTCTTTAATACGATGACCCCTTAACTTTCAACTTTAAGCCAATTTATCTCGACTCCTATGAAAGATATCAAAAAGTGGTAAACTGGCAAAATATTTTTGATAKTATAATAAACATTTTATTAGTACAGCTTTTTTTACATCTTTGACAGAAACCGAGAAAAATTGGCTCAAAGCCAGGGACCCTTCTATTTTAGGTTTTTGATTCATCAGAAAACAAGATTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31412</snp_id>
        <super_contig>c006201094.Contig1</super_contig>
        <contig_pos>135475</contig_pos>
        <strand></strand>
        <context>AATGTGTTTT[G/T]aaatcagaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGTAATAGAACGCCCCTCTGTGAAAAAGAACCCCCTTCAAAATGTGTTTT</left_flank>
        <right_flank>AAATCAGAAAATTCCGTACTTTTTCAGTGGAAAATATTCCCGGAACTCCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGGAAGTGCTGCACCTCAGAAGAACGGTTAACCATGTCGGTTCTTCAAAAAATTGCGGATATCGAGGCCGAGGTGAGAATTATATTTCTTTTGAATGTAAATCTCAATGAAATATTTTTTTCAGATGGCCAGGACCCAAAAGAACAAAGCCACCAACGCTCACTTGGGTATTTTGAAGGTGAGAACTCGAATTTTGATTTTCAAAAACGATGTCACAAAAAAATCAGATTCTGATAAACACTTTGAATAGCAACTTATGTTTATTAAACTTCGAATTAATCATGTTACACTGAAATTTCGAATCACTTTTGAAATTTCAAATCAGAAGCTGGAAGTTGGGTTACGGTATTCCACAACCTATTAAGCCTTAACTTCATTTTTCATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGTGCCCCTGTAATAGAAGGGCCCCCGTAATAGAACGCCCCTCTGTGAAAAAGAACCCCCTTCAAAATGTGTTTTGAAATCAGAAAATTCCGTACTTTTTCAGTGGAAAATATTCCCGGAACTCCACAATTTAATAGAAATTTGTTGATAGAATACATTTTGATTTGAATACTTGCACAATTTTGGTGAAATTGACAGATTTTCACAAATTTTGAACGGAAATTTGTCCAATTTTTCGATAAAAAATTTCGGGAAAAGTGGCCGGAAAAATAGAAGGGGCTCCTGTGATGGAAGGGATCTCTGGAGGTACCTTGGAAAAATAGAAGTGCCGGTCCTTCTAATACAGGTTTTACGGTATATAGTTTTTAAAAAATTGTACTTATTGAGTTTTCCAGGCAAAACTCGCCAAACTTCGTCGTGATTTGATTACACCAAAAGGTGGAGGTGGTGGACCAGGAGAAGGTTTCGATGTTGCTAAAACTGGAGATGCCCGTATTGGATTCGTCGGTAAGTTGCATTCAGATTTTGATAGAAATTTTCATTAAAAAGAGATTCGAAAGAATTCACAAAAAGTCT</canonical>
            <polymorphic>AAAAGGAAGTGCTGCACCTCAGAAGAACGGTTAACCATGTCGGTTCTTCAAAAAATTGCGGATATCGAGGCCGAGGTGAGAATTATATTTCTTTTGAATGTAAATCTCAATGAAATATTTTTTTCAGATGGCCAGGACCCAAAAGAACAAAGCCACCAACGCTCACTTGGGTATTTTGAAGGTGAGAACTCGAATTTTGATTTTCAAAAACGATGTCACAAAAAAATCAGATTCTGATAAACACTTTGAATAGCAACTTATGTTTATTAAACTTCGAATTAATCATGTTACACTGAAATTTCGAATCACTTTTGAAATTTCAAATCAGAAGCTGGAAGTTGGGTTACGGTATTCCACAACCTATTAAGCCTTAACTTCATTTTTCATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGTGCCCCTGTAATAGAAGGGCCCCCGTAATAGAACGCCCCTCTGTGAAAAAGAACCCCCTTCAAAATGTGTTTTKAAATCAGAAAATTCCGTACTTTTTCAGTGGAAAATATTCCCGGAACTCCACAATTTAATAGAAATTTGTTGATAGAATACATTTTGATTTGAATACTTGCACAATTTTGGTGAAATTGACAGATTTTCACAAATTTTGAACGGAAATTTGTCCAATTTTTCGATAAAAAATTTCGGGAAAAGTGGCCGGAAAAATAGAAGGGGCTCCTGTGATGGAAGGGATCTCTGGAGGTACCTTGGAAAAATAGAAGTGCCGGTCCTTCTAATACAGGTTTTACGGTATATAGTTTTTAAAAAATTGTACTTATTGAGTTTTCCAGGCAAAACTCGCCAAACTTCGTCGTGATTTGATTACACCAAAAGGTGGAGGTGGTGGACCAGGAGAAGGTTTCGATGTTGCTAAAACTGGAGATGCCCGTATTGGATTCGTCGGTAAGTTGCATTCAGATTTTGATAGAAATTTTCATTAAAAAGAGATTCGAAAGAATTCACAAAAAGTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTATTCCACAACCTATTAAGC</pcr_primer_p1>
		<pcr_primer_p2>CCTGGAAAACTCAATAAGTACAA</pcr_primer_p2>
		<pcr_amplicon_size>473</pcr_amplicon_size>
		<canonical_amplicon>GGTATTCCACAACCTATTAAGCCTTAACTTCATTTTTCATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGTGCCCCTGTAATAGAAGGGCCCCCGTAATAGAACGCCCCTCTGTGAAAAAGAACCCCCTTCAAAATGTGTTTTGAAATCAGAAAATTCCGTACTTTTTCAGTGGAAAATATTCCCGGAACTCCACAATTTAATAGAAATTTGTTGATAGAATACATTTTGATTTGAATACTTGCACAATTTTGGTGAAATTGACAGATTTTCACAAATTTTGAACGGAAATTTGTCCAATTTTTCGATAAAAAATTTCGGGAAAAGTGGCCGGAAAAATAGAAGGGGCTCCTGTGATGGAAGGGATCTCTGGAGGTACCTTGGAAAAATAGAAGTGCCGGTCCTTCTAATACAGGTTTTACGGTATATAGTTTTTAAAAAATTGTACTTATTGAGTTTTCCAGG</canonical_amplicon>
		<polymorphic_amplicon>GGTATTCCACAACCTATTAAGCCTTAACTTCATTTTTCATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGTGCCCCTGTAATAGAAGGGCCCCCGTAATAGAACGCCCCTCTGTGAAAAAGAACCCCCTTCAAAATGTGTTTTKAAATCAGAAAATTCCGTACTTTTTCAGTGGAAAATATTCCCGGAACTCCACAATTTAATAGAAATTTGTTGATAGAATACATTTTGATTTGAATACTTGCACAATTTTGGTGAAATTGACAGATTTTCACAAATTTTGAACGGAAATTTGTCCAATTTTTCGATAAAAAATTTCGGGAAAAGTGGCCGGAAAAATAGAAGGGGCTCCTGTGATGGAAGGGATCTCTGGAGGTACCTTGGAAAAATAGAAGTGCCGGTCCTTCTAATACAGGTTTTACGGTATATAGTTTTTAAAAAATTGTACTTATTGAGTTTTCCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31413</snp_id>
        <super_contig>c006201094.Contig1</super_contig>
        <contig_pos>135566</contig_pos>
        <strand></strand>
        <context>attttgattt[G/A]aatacttgca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGGAACTCCACAATTTAATAGAAATTTGTTGATAGAATACATTTTGATTT</left_flank>
        <right_flank>AATACTTGCACAATTTTGGTGAAATTGACAGATTTTCACAAATTTTGAAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGAATGTAAATCTCAATGAAATATTTTTTTCAGATGGCCAGGACCCAAAAGAACAAAGCCACCAACGCTCACTTGGGTATTTTGAAGGTGAGAACTCGAATTTTGATTTTCAAAAACGATGTCACAAAAAAATCAGATTCTGATAAACACTTTGAATAGCAACTTATGTTTATTAAACTTCGAATTAATCATGTTACACTGAAATTTCGAATCACTTTTGAAATTTCAAATCAGAAGCTGGAAGTTGGGTTACGGTATTCCACAACCTATTAAGCCTTAACTTCATTTTTCATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGTGCCCCTGTAATAGAAGGGCCCCCGTAATAGAACGCCCCTCTGTGAAAAAGAACCCCCTTCAAAATGTGTTTTGAAATCAGAAAATTCCGTACTTTTTCAGTGGAAAATATTCCCGGAACTCCACAATTTAATAGAAATTTGTTGATAGAATACATTTTGATTTGAATACTTGCACAATTTTGGTGAAATTGACAGATTTTCACAAATTTTGAACGGAAATTTGTCCAATTTTTCGATAAAAAATTTCGGGAAAAGTGGCCGGAAAAATAGAAGGGGCTCCTGTGATGGAAGGGATCTCTGGAGGTACCTTGGAAAAATAGAAGTGCCGGTCCTTCTAATACAGGTTTTACGGTATATAGTTTTTAAAAAATTGTACTTATTGAGTTTTCCAGGCAAAACTCGCCAAACTTCGTCGTGATTTGATTACACCAAAAGGTGGAGGTGGTGGACCAGGAGAAGGTTTCGATGTTGCTAAAACTGGAGATGCCCGTATTGGATTCGTCGGTAAGTTGCATTCAGATTTTGATAGAAATTTTCATTAAAAAGAGATTCGAAAGAATTCACAAAAAGTCTCAGAGGCACGCGGGGAAAGAGTTGGTTTTTGAGTCAAGTAAACAAGAAATTAGAACATCATCTAAAAACTACTACAGCCAGAGTCTACGAT</canonical>
            <polymorphic>TTTTGAATGTAAATCTCAATGAAATATTTTTTTCAGATGGCCAGGACCCAAAAGAACAAAGCCACCAACGCTCACTTGGGTATTTTGAAGGTGAGAACTCGAATTTTGATTTTCAAAAACGATGTCACAAAAAAATCAGATTCTGATAAACACTTTGAATAGCAACTTATGTTTATTAAACTTCGAATTAATCATGTTACACTGAAATTTCGAATCACTTTTGAAATTTCAAATCAGAAGCTGGAAGTTGGGTTACGGTATTCCACAACCTATTAAGCCTTAACTTCATTTTTCATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGTGCCCCTGTAATAGAAGGGCCCCCGTAATAGAACGCCCCTCTGTGAAAAAGAACCCCCTTCAAAATGTGTTTTGAAATCAGAAAATTCCGTACTTTTTCAGTGGAAAATATTCCCGGAACTCCACAATTTAATAGAAATTTGTTGATAGAATACATTTTGATTTRAATACTTGCACAATTTTGGTGAAATTGACAGATTTTCACAAATTTTGAACGGAAATTTGTCCAATTTTTCGATAAAAAATTTCGGGAAAAGTGGCCGGAAAAATAGAAGGGGCTCCTGTGATGGAAGGGATCTCTGGAGGTACCTTGGAAAAATAGAAGTGCCGGTCCTTCTAATACAGGTTTTACGGTATATAGTTTTTAAAAAATTGTACTTATTGAGTTTTCCAGGCAAAACTCGCCAAACTTCGTCGTGATTTGATTACACCAAAAGGTGGAGGTGGTGGACCAGGAGAAGGTTTCGATGTTGCTAAAACTGGAGATGCCCGTATTGGATTCGTCGGTAAGTTGCATTCAGATTTTGATAGAAATTTTCATTAAAAAGAGATTCGAAAGAATTCACAAAAAGTCTCAGAGGCACGCGGGGAAAGAGTTGGTTTTTGAGTCAAGTAAACAAGAAATTAGAACATCATCTAAAAACTACTACAGCCAGAGTCTACGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTATTCCACAACCTATTAAGC</pcr_primer_p1>
		<pcr_primer_p2>CCTGGAAAACTCAATAAGTACAA</pcr_primer_p2>
		<pcr_amplicon_size>473</pcr_amplicon_size>
		<canonical_amplicon>GGTATTCCACAACCTATTAAGCCTTAACTTCATTTTTCATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGTGCCCCTGTAATAGAAGGGCCCCCGTAATAGAACGCCCCTCTGTGAAAAAGAACCCCCTTCAAAATGTGTTTTGAAATCAGAAAATTCCGTACTTTTTCAGTGGAAAATATTCCCGGAACTCCACAATTTAATAGAAATTTGTTGATAGAATACATTTTGATTTGAATACTTGCACAATTTTGGTGAAATTGACAGATTTTCACAAATTTTGAACGGAAATTTGTCCAATTTTTCGATAAAAAATTTCGGGAAAAGTGGCCGGAAAAATAGAAGGGGCTCCTGTGATGGAAGGGATCTCTGGAGGTACCTTGGAAAAATAGAAGTGCCGGTCCTTCTAATACAGGTTTTACGGTATATAGTTTTTAAAAAATTGTACTTATTGAGTTTTCCAGG</canonical_amplicon>
		<polymorphic_amplicon>GGTATTCCACAACCTATTAAGCCTTAACTTCATTTTTCATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGTGCCCCTGTAATAGAAGGGCCCCCGTAATAGAACGCCCCTCTGTGAAAAAGAACCCCCTTCAAAATGTGTTTTGAAATCAGAAAATTCCGTACTTTTTCAGTGGAAAATATTCCCGGAACTCCACAATTTAATAGAAATTTGTTGATAGAATACATTTTGATTTRAATACTTGCACAATTTTGGTGAAATTGACAGATTTTCACAAATTTTGAACGGAAATTTGTCCAATTTTTCGATAAAAAATTTCGGGAAAAGTGGCCGGAAAAATAGAAGGGGCTCCTGTGATGGAAGGGATCTCTGGAGGTACCTTGGAAAAATAGAAGTGCCGGTCCTTCTAATACAGGTTTTACGGTATATAGTTTTTAAAAAATTGTACTTATTGAGTTTTCCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31414</snp_id>
        <super_contig>c006201094.Contig1</super_contig>
        <contig_pos>135696</contig_pos>
        <strand>+</strand>
        <context>GATGGAAGGG[A/C]TCTCTGGAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCGGGAAAAGTGGCCGGAAAAATAGAAGGGGCTCCTGTGATGGAAGGG</left_flank>
        <right_flank>TCTCTGGAGGTACCTTGGAAAAATAGAAGTGCCGGTCCTTCTAATACAGG</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATCAGATTCTGATAAACACTTTGAATAGCAACTTATGTTTATTAAACTTCGAATTAATCATGTTACACTGAAATTTCGAATCACTTTTGAAATTTCAAATCAGAAGCTGGAAGTTGGGTTACGGTATTCCACAACCTATTAAGCCTTAACTTCATTTTTCATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGTGCCCCTGTAATAGAAGGGCCCCCGTAATAGAACGCCCCTCTGTGAAAAAGAACCCCCTTCAAAATGTGTTTTGAAATCAGAAAATTCCGTACTTTTTCAGTGGAAAATATTCCCGGAACTCCACAATTTAATAGAAATTTGTTGATAGAATACATTTTGATTTGAATACTTGCACAATTTTGGTGAAATTGACAGATTTTCACAAATTTTGAACGGAAATTTGTCCAATTTTTCGATAAAAAATTTCGGGAAAAGTGGCCGGAAAAATAGAAGGGGCTCCTGTGATGGAAGGGATCTCTGGAGGTACCTTGGAAAAATAGAAGTGCCGGTCCTTCTAATACAGGTTTTACGGTATATAGTTTTTAAAAAATTGTACTTATTGAGTTTTCCAGGCAAAACTCGCCAAACTTCGTCGTGATTTGATTACACCAAAAGGTGGAGGTGGTGGACCAGGAGAAGGTTTCGATGTTGCTAAAACTGGAGATGCCCGTATTGGATTCGTCGGTAAGTTGCATTCAGATTTTGATAGAAATTTTCATTAAAAAGAGATTCGAAAGAATTCACAAAAAGTCTCAGAGGCACGCGGGGAAAGAGTTGGTTTTTGAGTCAAGTAAACAAGAAATTAGAACATCATCTAAAAACTACTACAGCCAGAGTCTACGATTTATACACCGGGAGAGAAAAATAAAGAGATTAGGAGAGAGAAAGGGGGGCTTGTTTGAACTTGAAATAAATAGTAGACATTTGAAAGAATGGGTTGAGCAATTAAACTGTCAAAAATACATATATCGAAG</canonical>
            <polymorphic>AAAAATCAGATTCTGATAAACACTTTGAATAGCAACTTATGTTTATTAAACTTCGAATTAATCATGTTACACTGAAATTTCGAATCACTTTTGAAATTTCAAATCAGAAGCTGGAAGTTGGGTTACGGTATTCCACAACCTATTAAGCCTTAACTTCATTTTTCATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGTGCCCCTGTAATAGAAGGGCCCCCGTAATAGAACGCCCCTCTGTGAAAAAGAACCCCCTTCAAAATGTGTTTTGAAATCAGAAAATTCCGTACTTTTTCAGTGGAAAATATTCCCGGAACTCCACAATTTAATAGAAATTTGTTGATAGAATACATTTTGATTTGAATACTTGCACAATTTTGGTGAAATTGACAGATTTTCACAAATTTTGAACGGAAATTTGTCCAATTTTTCGATAAAAAATTTCGGGAAAAGTGGCCGGAAAAATAGAAGGGGCTCCTGTGATGGAAGGGMTCTCTGGAGGTACCTTGGAAAAATAGAAGTGCCGGTCCTTCTAATACAGGTTTTACGGTATATAGTTTTTAAAAAATTGTACTTATTGAGTTTTCCAGGCAAAACTCGCCAAACTTCGTCGTGATTTGATTACACCAAAAGGTGGAGGTGGTGGACCAGGAGAAGGTTTCGATGTTGCTAAAACTGGAGATGCCCGTATTGGATTCGTCGGTAAGTTGCATTCAGATTTTGATAGAAATTTTCATTAAAAAGAGATTCGAAAGAATTCACAAAAAGTCTCAGAGGCACGCGGGGAAAGAGTTGGTTTTTGAGTCAAGTAAACAAGAAATTAGAACATCATCTAAAAACTACTACAGCCAGAGTCTACGATTTATACACCGGGAGAGAAAAATAAAGAGATTAGGAGAGAGAAAGGGGGGCTTGTTTGAACTTGAAATAAATAGTAGACATTTGAAAGAATGGGTTGAGCAATTAAACTGTCAAAAATACATATATCGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTATTCCACAACCTATTAAGC</pcr_primer_p1>
		<pcr_primer_p2>CCTGGAAAACTCAATAAGTACAA</pcr_primer_p2>
		<pcr_amplicon_size>473</pcr_amplicon_size>
		<canonical_amplicon>GGTATTCCACAACCTATTAAGCCTTAACTTCATTTTTCATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGTGCCCCTGTAATAGAAGGGCCCCCGTAATAGAACGCCCCTCTGTGAAAAAGAACCCCCTTCAAAATGTGTTTTGAAATCAGAAAATTCCGTACTTTTTCAGTGGAAAATATTCCCGGAACTCCACAATTTAATAGAAATTTGTTGATAGAATACATTTTGATTTGAATACTTGCACAATTTTGGTGAAATTGACAGATTTTCACAAATTTTGAACGGAAATTTGTCCAATTTTTCGATAAAAAATTTCGGGAAAAGTGGCCGGAAAAATAGAAGGGGCTCCTGTGATGGAAGGGATCTCTGGAGGTACCTTGGAAAAATAGAAGTGCCGGTCCTTCTAATACAGGTTTTACGGTATATAGTTTTTAAAAAATTGTACTTATTGAGTTTTCCAGG</canonical_amplicon>
		<polymorphic_amplicon>GGTATTCCACAACCTATTAAGCCTTAACTTCATTTTTCATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAGAAGTGCCCCTGTAATAGAAGGGCCCCCGTAATAGAACGCCCCTCTGTGAAAAAGAACCCCCTTCAAAATGTGTTTTGAAATCAGAAAATTCCGTACTTTTTCAGTGGAAAATATTCCCGGAACTCCACAATTTAATAGAAATTTGTTGATAGAATACATTTTGATTTGAATACTTGCACAATTTTGGTGAAATTGACAGATTTTCACAAATTTTGAACGGAAATTTGTCCAATTTTTCGATAAAAAATTTCGGGAAAAGTGGCCGGAAAAATAGAAGGGGCTCCTGTGATGGAAGGGMTCTCTGGAGGTACCTTGGAAAAATAGAAGTGCCGGTCCTTCTAATACAGGTTTTACGGTATATAGTTTTTAAAAAATTGTACTTATTGAGTTTTCCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31415</snp_id>
        <super_contig>c006201094.Contig1</super_contig>
        <contig_pos>170283</contig_pos>
        <strand>+</strand>
        <context>TTTTTTTATC[C/T]TCGAAACGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACTCTTAATGATTTAAATTACTGAAATGAATTTATTGACTTTTTTTATC</left_flank>
        <right_flank>TCGAAACGAAATGAGTTTCCAATATGAAGACATCCGAAGCCTTCAAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCTGAAGCACATGATCAAGGTCTTTTTCTCGAATCTGGGCACAGTATCCACTATCTATTATTTCAGATGGTGTTCCTGTTCAAATCGGTTTCCGATCCGGCGAACCATCAGACTTTGATCGTAAAACCCCGCAATTATCTGCTGAGTACTGCAAGAAAATCGCTGAAGATGCTGCTCGAGAGGCGAAGATTGAGGTCGAACGAGAGAAACAGAATGAGCTAAACTTGTTGAAAAAGAAGTTGGAGCAGTTGGAATTAGAAACTAGTTGTGCTATTTGTATGGATTCGAAAATTGAGGTTTTCAAAACAGCGATTTATTCTATATAATTTAAACTTCTTGTTTCAGATTGTCTTCAACTGTGGACATACTGCTTGTGTTGAATGTGCGGATAAGCTCAACAAACAATGTCACATCTGCAGAAAAACAATCGAGACAACTCAACCCATTTACTCTTAATGATTTAAATTACTGAAATGAATTTATTGACTTTTTTTATCTTCGAAACGAAATGAGTTTCCAATATGAAGACATCCGAAGCCTTCAAAATTTGATTTCCCGCGCATGTTCTCCCTCGGGGTCGTGGCCGCGCTCTCTTCAAAAACTAGGCCCTTTGCATAATTTTGCCACGTTTTTCAATTTTATTTTGGTTTTTTCGAGTTTTTAATAACTGGGTCATCGTTTTTATTCATCGTTAAAACTAAAAATATGTCTGAAAGTGTTTCAGTTATTTTCAGAATGCTTCGGTACATTATTCCTCGCAAGAAGGGCTCATTTGTCATCGCCGCCTTTCTCACTGTCGCCTTCTTCTGCATCGTTATCTATCACCGAAACGATCGGCGACGAGCGAAATTCCAATTCCCGGATATTGGTAAGATTTTGGGCTATCTTTCCGCAGCAATCAAAAACGCAAGAATATTTTCAAGAGACTTGTTTTTGTGTTCAACCACGGAATGCACCTAGTTTACAGAAAAGTATGCAGAAGAACTAGTACGGCTTCC</canonical>
            <polymorphic>TTGCTGAAGCACATGATCAAGGTCTTTTTCTCGAATCTGGGCACAGTATCCACTATCTATTATTTCAGATGGTGTTCCTGTTCAAATCGGTTTCCGATCCGGCGAACCATCAGACTTTGATCGTAAAACCCCGCAATTATCTGCTGAGTACTGCAAGAAAATCGCTGAAGATGCTGCTCGAGAGGCGAAGATTGAGGTCGAACGAGAGAAACAGAATGAGCTAAACTTGTTGAAAAAGAAGTTGGAGCAGTTGGAATTAGAAACTAGTTGTGCTATTTGTATGGATTCGAAAATTGAGGTTTTCAAAACAGCGATTTATTCTATATAATTTAAACTTCTTGTTTCAGATTGTCTTCAACTGTGGACATACTGCTTGTGTTGAATGTGCGGATAAGCTCAACAAACAATGTCACATCTGCAGAAAAACAATCGAGACAACTCAACCCATTTACTCTTAATGATTTAAATTACTGAAATGAATTTATTGACTTTTTTTATCYTCGAAACGAAATGAGTTTCCAATATGAAGACATCCGAAGCCTTCAAAATTTGATTTCCCGCGCATGTTCTCCCTCGGGGTCGTGGCCGCGCTCTCTTCAAAAACTAGGCCCTTTGCATAATTTTGCCACGTTTTTCAATTTTATTTTGGTTTTTTCGAGTTTTTAATAACTGGGTCATCGTTTTTATTCATCGTTAAAACTAAAAATATGTCTGAAAGTGTTTCAGTTATTTTCAGAATGCTTCGGTACATTATTCCTCGCAAGAAGGGCTCATTTGTCATCGCCGCCTTTCTCACTGTCGCCTTCTTCTGCATCGTTATCTATCACCGAAACGATCGGCGACGAGCGAAATTCCAATTCCCGGATATTGGTAAGATTTTGGGCTATCTTTCCGCAGCAATCAAAAACGCAAGAATATTTTCAAGAGACTTGTTTTTGTGTTCAACCACGGAATGCACCTAGTTTACAGAAAAGTATGCAGAAGAACTAGTACGGCTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>499 287 214</canonical_bands>
                <polymorphic_bands>713 287</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAACCCATTTACTCTTAATGAT</pcr_primer_p1>
		<pcr_primer_p2>AATAAAAACGATGACCCAGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCAACCCATTTACTCTTAATGATTTAAATTACTGAAATGAATTTATTGACTTTTTTTATCTTCGAAACGAAATGAGTTTCCAATATGAAGACATCCGAAGCCTTCAAAATTTGATTTCCCGCGCATGTTCTCCCTCGGGGTCGTGGCCGCGCTCTCTTCAAAAACTAGGCCCTTTGCATAATTTTGCCACGTTTTTCAATTTTATTTTGGTTTTTTCGAGTTTTTAATAACTGGGTCATCGTTTTTATT</canonical_amplicon>
		<polymorphic_amplicon>TCAACCCATTTACTCTTAATGATTTAAATTACTGAAATGAATTTATTGACTTTTTTTATCYTCGAAACGAAATGAGTTTCCAATATGAAGACATCCGAAGCCTTCAAAATTTGATTTCCCGCGCATGTTCTCCCTCGGGGTCGTGGCCGCGCTCTCTTCAAAAACTAGGCCCTTTGCATAATTTTGCCACGTTTTTCAATTTTATTTTGGTTTTTTCGAGTTTTTAATAACTGGGTCATCGTTTTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31416</snp_id>
        <super_contig>c006201094.Contig1</super_contig>
        <contig_pos>214317</contig_pos>
        <strand>+</strand>
        <context>CCTTCTGARA[A/G]ACGCCAGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGCTGTATTTTTTTCCAAAGTTAAAAATTTCAGGTAAATCCTTCTGAGA</left_flank>
        <right_flank>ACGCCAGAAACGCAAGAAGAAGCGACAATCATCTACTCACATCGAACACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGGCGAATGCAGTGGAGTCGATTGCCTATGCTGTCGTTCATACTAAATTCATCGGTGGAAAAAGCAGTGGAAGCGATGAATGTGTCCTTTTCAAGATCTTACAGGTACAGAAACAAATTTAAGCCATTTTTTTATTGAGTTAAAAAATATTGAAAATCGAATTTCAGGTGCTCCGTTCGCTTCTCCTCTCACCACCAGGAATCTTATTGTCCAATGAAGCAGTTTGTGACATGATGCAGTCGTGTTTCAGAATAGTTTTCGAACAAAATCTATCCTTGCTGTTAAGAAAAGTAAGTCTTGAAATTTTGTTTCTGCTCAATATATAAAATTTGTTTTTCAGGCAGCTGAATCAACTCTTGCTGACATGACTCAACTGATTTTCACTAGACTTCCGACTTTTGTAGAAGACACACGTCATCCGTATATTCGGCAACTGGTACGGTAACAAGAGCTGTATTTTTTTCCAAAGTTAAAAATTTCAGGTAAATCCTTCTGAGAAACGCCAGAAACGCAAGAAGAAGCGACAATCATCTACTCACATCGAACACAAGGAGAAGAAAGATGATGAAACGGAAAGTAATGCAACAGAGTCAACGAAACTGATTACTGCGACTTCTGAACCAGAAATTGACGGAGCAGCTACACTTGGTAAGTTTTCTTTTTTTCAAATTTTCGAATTGAATTCAAAAGATACAGGATACGATGTGGTCTTGACTACTGATCCCCCTGTCGATGCTGTAACTCATCCAGATCGAAACGTAGATGAGGTGAAAAAAGAGAGGCTCTCTGAAGGAGAAGAAGCAGATTCAGAATCGGAAGGAGGAGAAGAAGAGAGGCCGATCAGAACTCATGGCGGTCTGCAGCGAGAGATAGTTTCAGACGAAGAAGATCCATTATCAAACGATGATCATACAGTAGGCGGAGAAGAAAAAATGCCATACGGATTGCCATGTTGCAGAGAGTTGCTGAGGTATAATTTAAAATTAAATAGACTGGAAT</canonical>
            <polymorphic>GCGGCGAATGCAGTGGAGTCGATTGCCTATGCTGTCGTTCATACTAAATTCATCGGTGGAAAAAGCAGTGGAAGCGATGAATGTGTCCTTTTCAAGATCTTACAGGTACAGAAACAAATTTAAGCCATTTTTTTATTGAGTTAAAAAATATTGAAAATCGAATTTCAGGTGCTCCGTTCGCTTCTCCTCTCACCACCAGGAATCTTATTGTCCAATGAAGCAGTTTGTGACATGATGCAGTCGTGTTTCAGAATAGTTTTCGAACAAAATCTATCCTTGCTGTTAAGAAAAGTAAGTCTTGAAATTTTGTTTCTGCTCAATATATAAAATTTGTTTTTCAGGCAGCTGAATCAACTCTTGCTGACATGACTCAACTGATTTTCACTAGACTTCCGACTTTTGTAGAAGACACACGTCATCCGTATATTCGGCAACTGGTACGGTAACAAGAGCTGTATTTTTTTCCAAAGTTAAAAATTTCAGGTAAATCCTTCTGAGARACGCCAGAAACGCAAGAAGAAGCGACAATCATCTACTCACATCGAACACAAGGAGAAGAAAGATGATGAAACGGAAAGTAATGCAACAGAGTCAACGAAACTGATTACTGCGACTTCTGAACCAGAAATTGACGGAGCAGCTACACTTGGTAAGTTTTCTTTTTTTCAAATTTTCGAATTGAATTCAAAAGATACAGGATACGATGTGGTCTTGACTACTGATCCCCCTGTCGATGCTGTAACTCATCCAGATCGAAACGTAGATGAGGTGAAAAAAGAGAGGCTCTCTGAAGGAGAAGAAGCAGATTCAGAATCGGAAGGAGGAGAAGAAGAGAGGCCGATCAGAACTCATGGCGGTCTGCAGCGAGAGATAGTTTCAGACGAAGAAGATCCATTATCAAACGATGATCATACAGTAGGCGGAGAAGAAAAAATGCCATACGGATTGCCATGTTGCAGAGAGTTGCTGAGGTATAATTTAAAATTAAATAGACTGGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATGACTCAACTGATTTTCACT</pcr_primer_p1>
		<pcr_primer_p2>CAGTAATCAGTTTCGTTGACTCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACATGACTCAACTGATTTTCACTAGACTTCCGACTTTTGTAGAAGACACACGTCATCCGTATATTCGGCAACTGGTACGGTAACAAGAGCTGTATTTTTTTCCAAAGTTAAAAATTTCAGGTAAATCCTTCTGAGAAACGCCAGAAACGCAAGAAGAAGCGACAATCATCTACTCACATCGAACACAAGGAGAAGAAAGATGATGAAACGGAAAGTAATGCAACAGAGTCAACGAAACTGATTACTG</canonical_amplicon>
		<polymorphic_amplicon>ACATGACTCAACTGATTTTCACTAGACTTCCGACTTTTGTAGAAGACACACGTCATCCGTATATTCGGCAACTGGTACGGTAACAAGAGCTGTATTTTTTTCCAAAGTTAAAAATTTCAGGTAAATCCTTCTGAGARACGCCAGAAACGCAAGAAGAAGCGACAATCATCTACTCACATCGAACACAAGGAGAAGAAAGATGATGAAACGGAAAGTAATGCAACAGAGTCAACGAAACTGATTACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31417</snp_id>
        <super_contig>c006300932.Contig2</super_contig>
        <contig_pos>2124</contig_pos>
        <strand></strand>
        <context>ATGTTCCAAA[A/C]AATAACATTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCAGGTCGAAAAAGTGAAAAAATGAGGATATTGGCCTAAAATGTTCCAAA</left_flank>
        <right_flank>AATAACATTATGGGTCTCGTGAAGAAAGAATTGTTGGCGGGAATTTTGAA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTAATCCCTTCTTTTTCTGAGTTCTCAGTTTTCCATAAAACTAATCCTATAGTTTGGCCGACGGTCAAAACCCCGCCTCTTGTTATTCTTTCCTACCTGATGATGTCGGATTCCACGATGAACTATAACGGACAGTTGGCTCTAACGAAATTTCTTCATCGGAAGAAAACATTATCCAACAGTGAAGAATCAAACAAAAACGAAGGTGAGAGCTCCCGAGAGGGTCACCATCCAGCAGGTCGAAAAAGTGAAAAAATGAGGATATTGGCCTAAAATGTTCCAAATAATAACATTATGGGTCTCGAGAAGAATATGGGTCTCGTGAAGAAAGAATTGTTGGCGGGAATTTTGAATTTCAAAATTCAAAATTCAAAATTCGAATTTGAAAAAAACTGATTTAAAAAAAAAAACGAAGACGGCGAGAGCTCCCGAGAGGGTCACCATCCAGCAGGTCGAAAAAGTGAAAAAATGAGGATATTGGCCTAAAATGTTCCAAAAAATAACATTATGGGTCTCGTGAAGAAAGAATTGTTGGCGGGAATTTTGAATTTCAAAATTCAAAATTCAAAATTCGAATTTGAAAAAAACTGATTAAAAAAAAAAACGAAGACGGCGAGAGCTCCCGAGAGGGTCACCATCCAGCAGGTCGAAAAAGTGAAAAAATGAGGATATTGGCCTAAAATGTTCCAAACAATAACATTATGGGTCTCGAGAAGAATATGGGTCTCGTGAAGAAAAAATTGTTGGCGGGAATTTTGAATTTCAAAATTCAAATCAAAAAATATACTTTATTTTCAAATTCAAAATATTTGGCGGTAAAATTCAAAAAATTAAAAATTTACTATGTTTCGAAAACAAATTCAAAGTGTCCGGCAATAAATTTCCAAATTCAAAGTGAACGTCGAGTGCCCGTGTAGCCTAAGTGTCGCGGTCGGCCAAAAAAATCAAATTGAAACCTCTCAAGGTGCGGATCTGGTCGTTTCTGGAAGTTAACCTTG</canonical>
            <polymorphic>AATTAATCCCTTCTTTTTCTGAGTTCTCAGTTTTCCATAAAACTAATCCTATAGTTTGGCCGACGGTCAAAACCCCGCCTCTTGTTATTCTTTCCTACCTGATGATGTCGGATTCCACGATGAACTATAACGGACAGTTGGCTCTAACGAAATTTCTTCATCGGAAGAAAACATTATCCAACAGTGAAGAATCAAACAAAAACGAAGGTGAGAGCTCCCGAGAGGGTCACCATCCAGCAGGTCGAAAAAGTGAAAAAATGAGGATATTGGCCTAAAATGTTCCAAATAATAACATTATGGGTCTCGAGAAGAATATGGGTCTCGTGAAGAAAGAATTGTTGGCGGGAATTTTGAATTTCAAAATTCAAAATTCAAAATTCGAATTTGAAAAAAACTGATTTAAAAAAAAAAACGAAGACGGCGAGAGCTCCCGAGAGGGTCACCATCCAGCAGGTCGAAAAAGTGAAAAAATGAGGATATTGGCCTAAAATGTTCCAAAMAATAACATTATGGGTCTCGTGAAGAAAGAATTGTTGGCGGGAATTTTGAATTTCAAAATTCAAAATTCAAAATTCGAATTTGAAAAAAACTGATTAAAAAAAAAAACGAAGACGGCGAGAGCTCCCGAGAGGGTCACCATCCAGCAGGTCGAAAAAGTGAAAAAATGAGGATATTGGCCTAAAATGTTCCAAACAATAACATTATGGGTCTCGAGAAGAATATGGGTCTCGTGAAGAAAAAATTGTTGGCGGGAATTTTGAATTTCAAAATTCAAATCAAAAAATATACTTTATTTTCAAATTCAAAATATTTGGCGGTAAAATTCAAAAAATTAAAAATTTACTATGTTTCGAAAACAAATTCAAAGTGTCCGGCAATAAATTTCCAAATTCAAAGTGAACGTCGAGTGCCCGTGTAGCCTAAGTGTCGCGGTCGGCCAAAAAAATCAAATTGAAACCTCTCAAGGTGCGGATCTGGTCGTTTCTGGAAGTTAACCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGTCGAAAAAGTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAACATTTTAGGCCAATATCC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CAGGTCGAAAAAGTGAAAAAATGAGGATATTGGCCTAAAATGTTCCAAATAATAACATTATGGGTCTCGAGAAGAATATGGGTCTCGTGAAGAAAGAATTGTTGGCGGGAATTTTGAATTTCAAAATTCAAAATTCAAAATTCGAATTTGAAAAAAACTGATTTAAAAAAAAAAACGAAGACGGCGAGAGCTCCCGAGAGGGTCACCATCCAGCAGGTCGAAAAAGTGAAAAAATGAGGATATTGGCCTAAAATGTTCCAAAAAATAACATTATGGGTCTCGTGAAGAAAGAATTGTTGGCGGGAATTTTGAATTTCAAAATTCAAAATTCAAAATTCGAATTTGAAAAAAACTGATTAAAAAAAAAAACGAAGACGGCGAGAGCTCCCGAGAGGGTCACCATCCAGCAGGTCGAAAAAGTGAAAAAATGAGGATATTGGCCTAAAATGTTC</canonical_amplicon>
		<polymorphic_amplicon>CAGGTCGAAAAAGTGAAAAAATGAGGATATTGGCCTAAAATGTTCCAAATAATAACATTATGGGTCTCGAGAAGAATATGGGTCTCGTGAAGAAAGAATTGTTGGCGGGAATTTTGAATTTCAAAATTCAAAATTCAAAATTCGAATTTGAAAAAAACTGATTTAAAAAAAAAAACGAAGACGGCGAGAGCTCCCGAGAGGGTCACCATCCAGCAGGTCGAAAAAGTGAAAAAATGAGGATATTGGCCTAAAATGTTCCAAAMAATAACATTATGGGTCTCGTGAAGAAAGAATTGTTGGCGGGAATTTTGAATTTCAAAATTCAAAATTCAAAATTCGAATTTGAAAAAAACTGATTAAAAAAAAAAACGAAGACGGCGAGAGCTCCCGAGAGGGTCACCATCCAGCAGGTCGAAAAAGTGAAAAAATGAGGATATTGGCCTAAAATGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31418</snp_id>
        <super_contig>c006300932.Contig2</super_contig>
        <contig_pos>17223</contig_pos>
        <strand></strand>
        <context>aaagttggct[T/G]catgccagat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CGGTTGGGAATCTGAAAAAAAGCGCGCTTCGTCGCGCACAAAAGTTGGCT</left_flank>
        <right_flank>CATGCCAGATTCGAAAATTTCAAAAGGTGTTTTGAAAAATACGTGAAGTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTGTTTTTCTGAGTGAATTGTGAAGTGTTCGATATCCTAATTTTCTGATTTTTCAGACCTATCTCTCCGTTGGAAGTGTTGCTACATGTGAATACATTTCCGAGAAAGCTCGTGCATGGATTACTGTAGTCTACAACGTGGCATGGTCCTTAGGAATGGTGTGGACTCTTTTAGTCACTTTGATGACTACTGATTGGAGATGGAGATACTTTATAGTCGTGTTTCCTGGAATTTATGCATTTTTATTGTGGTGTTTTCTTCCTGAGTCTCCACACTGGCTAATTGTGAAAAATCGAACAGAAAAGTTAAAGAAATACATTGAAACGGCAAATAGGTATACATTTATAAGCGGGCTAGAACACTGTAAAATTTATGAGTAGAAATTCAGAAAAATTTTCGGATTTGGATACTATCGATTTTGAGTTTGTTTTTTTTTTCACGGCATCGCGGTTGGGAATCTGAAAAAAAGCGCGCTTCGTCGCGCACAAAAGTTGGCTTCATGCCAGATTCGAAAATTTCAAAAGGTGTTTTGAAAAATACGTGAAGTTAAGCGTTGTTGAGTCGCTACTCACCGAAAAGCCGCGACGCGACCGCACAACGCGTCCAAACTTGGCGCGCTTTCCAATTTTTAAATCTAGGTCCCCTTCCGCGAGGCCGTGTTTTTGTGGTCTAGAATTTTATCTTTCTAGAGTTTCTTTAGATAGAAGGATCCATAGTAAAAAATGACATTTTCATGAATATATTCAGTTTTTAAAAGATTTCAGAATCAACAAAAAAACGCCAGACTTCTCGGAATGTCAACAAAGTTCCTATCACGAGGAAAAACACGAATCATTCAAGGCTCTGTTGGGAAGTAAAAAACTGATTTGGATACTTTTCGCAAATGGATTTATCGAGTTAGGATATCAGAGAAAACGGAAAACCTGATTGAAAATTTTCCAGAATGGTCATTTCCTTAGTCTATTTTGCCATTTCATTTTTGTGCGCTGAGTTGGGAG</canonical>
            <polymorphic>ACTTGTTTTTCTGAGTGAATTGTGAAGTGTTCGATATCCTAATTTTCTGATTTTTCAGACCTATCTCTCCGTTGGAAGTGTTGCTACATGTGAATACATTTCCGAGAAAGCTCGTGCATGGATTACTGTAGTCTACAACGTGGCATGGTCCTTAGGAATGGTGTGGACTCTTTTAGTCACTTTGATGACTACTGATTGGAGATGGAGATACTTTATAGTCGTGTTTCCTGGAATTTATGCATTTTTATTGTGGTGTTTTCTTCCTGAGTCTCCACACTGGCTAATTGTGAAAAATCGAACAGAAAAGTTAAAGAAATACATTGAAACGGCAAATAGGTATACATTTATAAGCGGGCTAGAACACTGTAAAATTTATGAGTAGAAATTCAGAAAAATTTTCGGATTTGGATACTATCGATTTTGAGTTTGTTTTTTTTTTCACGGCATCGCGGTTGGGAATCTGAAAAAAAGCGCGCTTCGTCGCGCACAAAAGTTGGCTKCATGCCAGATTCGAAAATTTCAAAAGGTGTTTTGAAAAATACGTGAAGTTAAGCGTTGTTGAGTCGCTACTCACCGAAAAGCCGCGACGCGACCGCACAACGCGTCCAAACTTGGCGCGCTTTCCAATTTTTAAATCTAGGTCCCCTTCCGCGAGGCCGTGTTTTTGTGGTCTAGAATTTTATCTTTCTAGAGTTTCTTTAGATAGAAGGATCCATAGTAAAAAATGACATTTTCATGAATATATTCAGTTTTTAAAAGATTTCAGAATCAACAAAAAAACGCCAGACTTCTCGGAATGTCAACAAAGTTCCTATCACGAGGAAAAACACGAATCATTCAAGGCTCTGTTGGGAAGTAAAAAACTGATTTGGATACTTTTCGCAAATGGATTTATCGAGTTAGGATATCAGAGAAAACGGAAAACCTGATTGAAAATTTTCCAGAATGGTCATTTCCTTAGTCTATTTTGCCATTTCATTTTTGTGCGCTGAGTTGGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATCGATTTTGAGTTTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAGATAAAATTCTAGACCACAAA</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>CTATCGATTTTGAGTTTGTTTTTTTTTTCACGGCATCGCGGTTGGGAATCTGAAAAAAAGCGCGCTTCGTCGCGCACAAAAGTTGGCTTCATGCCAGATTCGAAAATTTCAAAAGGTGTTTTGAAAAATACGTGAAGTTAAGCGTTGTTGAGTCGCTACTCACCGAAAAGCCGCGACGCGACCGCACAACGCGTCCAAACTTGGCGCGCTTTCCAATTTTTAAATCTAGGTCCCCTTCCGCGAGGCCGTGTTTTTGTGGTCTAGAATTTTATCTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTATCGATTTTGAGTTTGTTTTTTTTTTCACGGCATCGCGGTTGGGAATCTGAAAAAAAGCGCGCTTCGTCGCGCACAAAAGTTGGCTKCATGCCAGATTCGAAAATTTCAAAAGGTGTTTTGAAAAATACGTGAAGTTAAGCGTTGTTGAGTCGCTACTCACCGAAAAGCCGCGACGCGACCGCACAACGCGTCCAAACTTGGCGCGCTTTCCAATTTTTAAATCTAGGTCCCCTTCCGCGAGGCCGTGTTTTTGTGGTCTAGAATTTTATCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31419</snp_id>
        <super_contig>c006300932.Contig2</super_contig>
        <contig_pos>17525</contig_pos>
        <strand>+</strand>
        <context>TCGGAATGTC[A/G]ACAAAGTTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTAAAAGATTTCAGAATCAACAAAAAAACGCCAGACTTCTCGGAATGTC</left_flank>
        <right_flank>ACAAAGTTCCTATCACGAGGAAAAACACGAATCATTCAAGGCTCTGTTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAGTTAAAGAAATACATTGAAACGGCAAATAGGTATACATTTATAAGCGGGCTAGAACACTGTAAAATTTATGAGTAGAAATTCAGAAAAATTTTCGGATTTGGATACTATCGATTTTGAGTTTGTTTTTTTTTTCACGGCATCGCGGTTGGGAATCTGAAAAAAAGCGCGCTTCGTCGCGCACAAAAGTTGGCTTCATGCCAGATTCGAAAATTTCAAAAGGTGTTTTGAAAAATACGTGAAGTTAAGCGTTGTTGAGTCGCTACTCACCGAAAAGCCGCGACGCGACCGCACAACGCGTCCAAACTTGGCGCGCTTTCCAATTTTTAAATCTAGGTCCCCTTCCGCGAGGCCGTGTTTTTGTGGTCTAGAATTTTATCTTTCTAGAGTTTCTTTAGATAGAAGGATCCATAGTAAAAAATGACATTTTCATGAATATATTCAGTTTTTAAAAGATTTCAGAATCAACAAAAAAACGCCAGACTTCTCGGAATGTCAACAAAGTTCCTATCACGAGGAAAAACACGAATCATTCAAGGCTCTGTTGGGAAGTAAAAAACTGATTTGGATACTTTTCGCAAATGGATTTATCGAGTTAGGATATCAGAGAAAACGGAAAACCTGATTGAAAATTTTCCAGAATGGTCATTTCCTTAGTCTATTTTGCCATTTCATTTTTGTGCGCTGAGTTGGGAGGGGATCATGTCCAGGCATTTTTATTCTCTTCAATTGTTGAAATTCCAGGTGGTTCAATAACAAAGTTTTGATAAGACTATCTATGTGTTTTCCTTTCATTTCGAAACATTTCATTTCAAAACAAGTAGTTTCTAGTACTGGTTTTACGGTACTTTAGAAAAAATGTTTTTTTGCAGCTGGCCTCTCGGTATTACCCTTGATGATATTTATGGGACGGAAAACCCTTGTCATCTGGTGCCTGGTTTTTCAAACGTTAGCCTTGATTGCAGTTACGGTTTTCCTGCATTCGTATGAAATGAATT</canonical>
            <polymorphic>AAAAGTTAAAGAAATACATTGAAACGGCAAATAGGTATACATTTATAAGCGGGCTAGAACACTGTAAAATTTATGAGTAGAAATTCAGAAAAATTTTCGGATTTGGATACTATCGATTTTGAGTTTGTTTTTTTTTTCACGGCATCGCGGTTGGGAATCTGAAAAAAAGCGCGCTTCGTCGCGCACAAAAGTTGGCTTCATGCCAGATTCGAAAATTTCAAAAGGTGTTTTGAAAAATACGTGAAGTTAAGCGTTGTTGAGTCGCTACTCACCGAAAAGCCGCGACGCGACCGCACAACGCGTCCAAACTTGGCGCGCTTTCCAATTTTTAAATCTAGGTCCCCTTCCGCGAGGCCGTGTTTTTGTGGTCTAGAATTTTATCTTTCTAGAGTTTCTTTAGATAGAAGGATCCATAGTAAAAAATGACATTTTCATGAATATATTCAGTTTTTAAAAGATTTCAGAATCAACAAAAAAACGCCAGACTTCTCGGAATGTCRACAAAGTTCCTATCACGAGGAAAAACACGAATCATTCAAGGCTCTGTTGGGAAGTAAAAAACTGATTTGGATACTTTTCGCAAATGGATTTATCGAGTTAGGATATCAGAGAAAACGGAAAACCTGATTGAAAATTTTCCAGAATGGTCATTTCCTTAGTCTATTTTGCCATTTCATTTTTGTGCGCTGAGTTGGGAGGGGATCATGTCCAGGCATTTTTATTCTCTTCAATTGTTGAAATTCCAGGTGGTTCAATAACAAAGTTTTGATAAGACTATCTATGTGTTTTCCTTTCATTTCGAAACATTTCATTTCAAAACAAGTAGTTTCTAGTACTGGTTTTACGGTACTTTAGAAAAAATGTTTTTTTGCAGCTGGCCTCTCGGTATTACCCTTGATGATATTTATGGGACGGAAAACCCTTGTCATCTGGTGCCTGGTTTTTCAAACGTTAGCCTTGATTGCAGTTACGGTTTTCCTGCATTCGTATGAAATGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGTGGTCTAGAATTTTATCTTTC</pcr_primer_p1>
		<pcr_primer_p2>TCTCTGATATCCTAACTCGATAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTGTGGTCTAGAATTTTATCTTTCTAGAGTTTCTTTAGATAGAAGGATCCATAGTAAAAAATGACATTTTCATGAATATATTCAGTTTTTAAAAGATTTCAGAATCAACAAAAAAACGCCAGACTTCTCGGAATGTCAACAAAGTTCCTATCACGAGGAAAAACACGAATCATTCAAGGCTCTGTTGGGAAGTAAAAAACTGATTTGGATACTTTTCGCAAATGGATTTATCGAGTTAGGATATCAGAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTGTGGTCTAGAATTTTATCTTTCTAGAGTTTCTTTAGATAGAAGGATCCATAGTAAAAAATGACATTTTCATGAATATATTCAGTTTTTAAAAGATTTCAGAATCAACAAAAAAACGCCAGACTTCTCGGAATGTCRACAAAGTTCCTATCACGAGGAAAAACACGAATCATTCAAGGCTCTGTTGGGAAGTAAAAAACTGATTTGGATACTTTTCGCAAATGGATTTATCGAGTTAGGATATCAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31420</snp_id>
        <super_contig>c006300932.Contig2</super_contig>
        <contig_pos>17580</contig_pos>
        <strand>+</strand>
        <context>TGTTGGGAAG[A/T]AAAAAACTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTTCCTATCACGAGGAAAAACACGAATCATTCAAGGCTCTGTTGGGAAG</left_flank>
        <right_flank>AAAAAACTGATTTGGATACTTTTCGCAAATGGATTTATCGAGTTAGGATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAACACTGTAAAATTTATGAGTAGAAATTCAGAAAAATTTTCGGATTTGGATACTATCGATTTTGAGTTTGTTTTTTTTTTCACGGCATCGCGGTTGGGAATCTGAAAAAAAGCGCGCTTCGTCGCGCACAAAAGTTGGCTTCATGCCAGATTCGAAAATTTCAAAAGGTGTTTTGAAAAATACGTGAAGTTAAGCGTTGTTGAGTCGCTACTCACCGAAAAGCCGCGACGCGACCGCACAACGCGTCCAAACTTGGCGCGCTTTCCAATTTTTAAATCTAGGTCCCCTTCCGCGAGGCCGTGTTTTTGTGGTCTAGAATTTTATCTTTCTAGAGTTTCTTTAGATAGAAGGATCCATAGTAAAAAATGACATTTTCATGAATATATTCAGTTTTTAAAAGATTTCAGAATCAACAAAAAAACGCCAGACTTCTCGGAATGTCAACAAAGTTCCTATCACGAGGAAAAACACGAATCATTCAAGGCTCTGTTGGGAAGTAAAAAACTGATTTGGATACTTTTCGCAAATGGATTTATCGAGTTAGGATATCAGAGAAAACGGAAAACCTGATTGAAAATTTTCCAGAATGGTCATTTCCTTAGTCTATTTTGCCATTTCATTTTTGTGCGCTGAGTTGGGAGGGGATCATGTCCAGGCATTTTTATTCTCTTCAATTGTTGAAATTCCAGGTGGTTCAATAACAAAGTTTTGATAAGACTATCTATGTGTTTTCCTTTCATTTCGAAACATTTCATTTCAAAACAAGTAGTTTCTAGTACTGGTTTTACGGTACTTTAGAAAAAATGTTTTTTTGCAGCTGGCCTCTCGGTATTACCCTTGATGATATTTATGGGACGGAAAACCCTTGTCATCTGGTGCCTGGTTTTTCAAACGTTAGCCTTGATTGCAGTTACGGTTTTCCTGCATTCGTATGAAATGAATTTAGCGATGATGTTGGTAGCGAAGATTATGGCCACGTGAGTTTTGAAGAATCTGAA</canonical>
            <polymorphic>AGAACACTGTAAAATTTATGAGTAGAAATTCAGAAAAATTTTCGGATTTGGATACTATCGATTTTGAGTTTGTTTTTTTTTTCACGGCATCGCGGTTGGGAATCTGAAAAAAAGCGCGCTTCGTCGCGCACAAAAGTTGGCTTCATGCCAGATTCGAAAATTTCAAAAGGTGTTTTGAAAAATACGTGAAGTTAAGCGTTGTTGAGTCGCTACTCACCGAAAAGCCGCGACGCGACCGCACAACGCGTCCAAACTTGGCGCGCTTTCCAATTTTTAAATCTAGGTCCCCTTCCGCGAGGCCGTGTTTTTGTGGTCTAGAATTTTATCTTTCTAGAGTTTCTTTAGATAGAAGGATCCATAGTAAAAAATGACATTTTCATGAATATATTCAGTTTTTAAAAGATTTCAGAATCAACAAAAAAACGCCAGACTTCTCGGAATGTCAACAAAGTTCCTATCACGAGGAAAAACACGAATCATTCAAGGCTCTGTTGGGAAGWAAAAAACTGATTTGGATACTTTTCGCAAATGGATTTATCGAGTTAGGATATCAGAGAAAACGGAAAACCTGATTGAAAATTTTCCAGAATGGTCATTTCCTTAGTCTATTTTGCCATTTCATTTTTGTGCGCTGAGTTGGGAGGGGATCATGTCCAGGCATTTTTATTCTCTTCAATTGTTGAAATTCCAGGTGGTTCAATAACAAAGTTTTGATAAGACTATCTATGTGTTTTCCTTTCATTTCGAAACATTTCATTTCAAAACAAGTAGTTTCTAGTACTGGTTTTACGGTACTTTAGAAAAAATGTTTTTTTGCAGCTGGCCTCTCGGTATTACCCTTGATGATATTTATGGGACGGAAAACCCTTGTCATCTGGTGCCTGGTTTTTCAAACGTTAGCCTTGATTGCAGTTACGGTTTTCCTGCATTCGTATGAAATGAATTTAGCGATGATGTTGGTAGCGAAGATTATGGCCACGTGAGTTTTGAAGAATCTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTGGTCTAGAATTTTATCTTTC</pcr_primer_p1>
		<pcr_primer_p2>TCTCTGATATCCTAACTCGATAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTGTGGTCTAGAATTTTATCTTTCTAGAGTTTCTTTAGATAGAAGGATCCATAGTAAAAAATGACATTTTCATGAATATATTCAGTTTTTAAAAGATTTCAGAATCAACAAAAAAACGCCAGACTTCTCGGAATGTCAACAAAGTTCCTATCACGAGGAAAAACACGAATCATTCAAGGCTCTGTTGGGAAGTAAAAAACTGATTTGGATACTTTTCGCAAATGGATTTATCGAGTTAGGATATCAGAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTGTGGTCTAGAATTTTATCTTTCTAGAGTTTCTTTAGATAGAAGGATCCATAGTAAAAAATGACATTTTCATGAATATATTCAGTTTTTAAAAGATTTCAGAATCAACAAAAAAACGCCAGACTTCTCGGAATGTCAACAAAGTTCCTATCACGAGGAAAAACACGAATCATTCAAGGCTCTGTTGGGAAGWAAAAAACTGATTTGGATACTTTTCGCAAATGGATTTATCGAGTTAGGATATCAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31421</snp_id>
        <super_contig>c006300932.Contig2</super_contig>
        <contig_pos>21181</contig_pos>
        <strand></strand>
        <context>atttattgat[T/C]agaagaaaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGAGCTTCTTTCGACGATTTTATAATAATATAATATAATAATTTATTGAT</left_flank>
        <right_flank>AGAAGAAAATATGGCACAAAAGTTATAACGGGAGTTCTAGATAAAATCCC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTCGGTTCAATGATGGAACCAGTCCACTAGATGCTTTTCTTCCACCGCTACCTGCATTTTTGTCTTCCTTGTTTTGCTGAGCAGCCACTGCCTTAAATTTAAGTAATCATGAAAAAAGTGTTTTCTCTTTGTTAGTTTTTTGATTACAACACCAAATCTCTCTAACTTTGAAAATGAGCTGTTTGAAAATGTAAAATAACCTTTAAAATTGAAATTCTTGAAATCCTACCTTTCTAACTTTGAACACAAAAAATATAGCATGAATAATAGATTGATGCATTTTTCTTTGACTCTTAAGTTTTAACGTCATTTTGCTAAATGTCTACGGAAATCTTTGGCGGAAAAACTAGAGTCTCACAAATTTCGAAACATGAAATTCTTTAGAATAAAGTATTTCAGATTTCCAGTATTATCCTATAATCCGGAAAATCTGAAGATTTAGAGGGTGGAGCTTCTTTCGACGATTTTATAATAATATAATATAATAATTTATTGATTAGAAGAAAATATGGCACAAAAGTTATAACGGGAGTTCTAGATAAAATCCCTAGCGAGATGAACCTAGAGAATGGGGAAGAAAATGGTAAACATGTAAGGTTGGCAAGATATTCAAAAAAAAGGGGAAATTATTTTTTATAATTATTATATTATTAATGGCGGAAAATGTGGGAAATATATAGAAGCACAACCATCTATGTATTTCTAGAGAATTTTCTGATAATTGAATTAGCACTCGGAACATTCACAAATACATATTTGAAAAACTGTTAAAAACTAAATACTGTTGAAATCCGTGGGGATTTTGGAAGCTTCAAATGTTATCTTTCTGTACAAAAAAGGGAAACATTTTCATTTAGAAAGAAAGAGGAAATAATGGAGGAAGCTGAAGTGAGCTTGCACTAAGAATAAAAGTTGTATGATTTTTCAACTTTAAAAAAATCAGGCTTCCTTTTTAAAAAAAAAAACAAACAGCAACCCTAAATTCTCACCTGTGCGTC</canonical>
            <polymorphic>GAGTCGGTTCAATGATGGAACCAGTCCACTAGATGCTTTTCTTCCACCGCTACCTGCATTTTTGTCTTCCTTGTTTTGCTGAGCAGCCACTGCCTTAAATTTAAGTAATCATGAAAAAAGTGTTTTCTCTTTGTTAGTTTTTTGATTACAACACCAAATCTCTCTAACTTTGAAAATGAGCTGTTTGAAAATGTAAAATAACCTTTAAAATTGAAATTCTTGAAATCCTACCTTTCTAACTTTGAACACAAAAAATATAGCATGAATAATAGATTGATGCATTTTTCTTTGACTCTTAAGTTTTAACGTCATTTTGCTAAATGTCTACGGAAATCTTTGGCGGAAAAACTAGAGTCTCACAAATTTCGAAACATGAAATTCTTTAGAATAAAGTATTTCAGATTTCCAGTATTATCCTATAATCCGGAAAATCTGAAGATTTAGAGGGTGGAGCTTCTTTCGACGATTTTATAATAATATAATATAATAATTTATTGATYAGAAGAAAATATGGCACAAAAGTTATAACGGGAGTTCTAGATAAAATCCCTAGCGAGATGAACCTAGAGAATGGGGAAGAAAATGGTAAACATGTAAGGTTGGCAAGATATTCAAAAAAAAGGGGAAATTATTTTTTATAATTATTATATTATTAATGGCGGAAAATGTGGGAAATATATAGAAGCACAACCATCTATGTATTTCTAGAGAATTTTCTGATAATTGAATTAGCACTCGGAACATTCACAAATACATATTTGAAAAACTGTTAAAAACTAAATACTGTTGAAATCCGTGGGGATTTTGGAAGCTTCAAATGTTATCTTTCTGTACAAAAAAGGGAAACATTTTCATTTAGAAAGAAAGAGGAAATAATGGAGGAAGCTGAAGTGAGCTTGCACTAAGAATAAAAGTTGTATGATTTTTCAACTTTAAAAAAATCAGGCTTCCTTTTTAAAAAAAAAAACAAACAGCAACCCTAAATTCTCACCTGTGCGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTAGAGGGTGGAGCTTCTT</pcr_primer_p1>
		<pcr_primer_p2>TGCTTCTATATATTTCCCACATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTAGAGGGTGGAGCTTCTTTCGACGATTTTATAATAATATAATATAATAATTTATTGATTAGAAGAAAATATGGCACAAAAGTTATAACGGGAGTTCTAGATAAAATCCCTAGCGAGATGAACCTAGAGAATGGGGAAGAAAATGGTAAACATGTAAGGTTGGCAAGATATTCAAAAAAAAGGGGAAATTATTTTTTATAATTATTATATTATTAATGGCGGAAAATGTGGGAAATATATAGAAGCA</canonical_amplicon>
		<polymorphic_amplicon>ATTTAGAGGGTGGAGCTTCTTTCGACGATTTTATAATAATATAATATAATAATTTATTGATYAGAAGAAAATATGGCACAAAAGTTATAACGGGAGTTCTAGATAAAATCCCTAGCGAGATGAACCTAGAGAATGGGGAAGAAAATGGTAAACATGTAAGGTTGGCAAGATATTCAAAAAAAAGGGGAAATTATTTTTTATAATTATTATATTATTAATGGCGGAAAATGTGGGAAATATATAGAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31422</snp_id>
        <super_contig>c006300932.Contig2</super_contig>
        <contig_pos>51488</contig_pos>
        <strand>+</strand>
        <context>CAGCAGTGTC[C/T]CATCAAATAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTTGAAATAAATACAAATCGGGAGTTTTCAGCTCGCCATCAGCAGTGTC</left_flank>
        <right_flank>CATCAAATACCATCCAAAGACGATCCAACTATAAATTCGTCGGAATGCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGATTTAGAAATCTGTAGATAATCTCGCCTTTTAAACTGATAAAGAAAATCACTTCAGAATTTTGATTAAATAAGATGTTGACATATTTAATCGATTCATTTCTGAATTAATTTTTTAATAGGTTAAGATTCGTAATTAATCCCGCAATTAAACATCAAGGAAATTTAGGTCTAGTTGGAACTTTCCACACGCACCGAAAACGCGCAATGTATTTTCTCCTGACGCCGTTCTCGATCTTCAGGACGTTTGCGCCGTTTCGTGGGGTGTTTCCTTTTGTCGCTCGCCATGTTTTGAACCATTTTATCGTTAACGAAAATCATTAAAAATTAAACGAATGTTTGTTTTCAGTAACTTAACCTATCGAAAACATGGCGCTGAAAAGTGTGGCAGTGCTGACAAAAGGCATGTTCGGAAGAATGCCGGCCCAGGTTTGTTCTTAACGACGAGCTTGAAATAAATACAAATCGGGAGTTTTCAGCTCGCCATCAGCAGTGTCCCATCAAATACCATCCAAAGACGATCCAACTATAAATTCGTCGGAATGCCCAATGAGACCGACGGAACCGTGGCAGGCGATTTGAACTATGGTCTTCACACCGTTTTCTTCACCGAGCTTTTCCGAGGTGCGTTTTCAAGAGGATGAAAAATTTTGTTTGTGGCATACAAAAATTGTACAAGTCAGCTATTTCAAGTCAGCTATTAAAATTTCAATTCTAAATCAGGTTGTTTGTTAAGTTATTTGGAATATGAACTACAACTCATTGGTTTTTCAGGATTTGGAGTGATGCTTGGTCACGTCTTCATGGAGCCAGCCACCATCAATTACCCTTTCGAAAAGGGACCTCTCAGCTCGAGATTCAGGTGACTAGTAGCTGCAAAAATTTAAAAAAAACCACGAACAAATACATTTTTATTCAAAATCAAGACAATTCAGAATTCAAGAACCCCTTAAACAAAAAACTCCGGTTTTCTCTTCAACACTTATTATTGTTGTCCG</canonical>
            <polymorphic>TCTGATTTAGAAATCTGTAGATAATCTCGCCTTTTAAACTGATAAAGAAAATCACTTCAGAATTTTGATTAAATAAGATGTTGACATATTTAATCGATTCATTTCTGAATTAATTTTTTAATAGGTTAAGATTCGTAATTAATCCCGCAATTAAACATCAAGGAAATTTAGGTCTAGTTGGAACTTTCCACACGCACCGAAAACGCGCAATGTATTTTCTCCTGACGCCGTTCTCGATCTTCAGGACGTTTGCGCCGTTTCGTGGGGTGTTTCCTTTTGTCGCTCGCCATGTTTTGAACCATTTTATCGTTAACGAAAATCATTAAAAATTAAACGAATGTTTGTTTTCAGTAACTTAACCTATCGAAAACATGGCGCTGAAAAGTGTGGCAGTGCTGACAAAAGGCATGTTCGGAAGAATGCCGGCCCAGGTTTGTTCTTAACGACGAGCTTGAAATAAATACAAATCGGGAGTTTTCAGCTCGCCATCAGCAGTGTCYCATCAAATACCATCCAAAGACGATCCAACTATAAATTCGTCGGAATGCCCAATGAGACCGACGGAACCGTGGCAGGCGATTTGAACTATGGTCTTCACACCGTTTTCTTCACCGAGCTTTTCCGAGGTGCGTTTTCAAGAGGATGAAAAATTTTGTTTGTGGCATACAAAAATTGTACAAGTCAGCTATTTCAAGTCAGCTATTAAAATTTCAATTCTAAATCAGGTTGTTTGTTAAGTTATTTGGAATATGAACTACAACTCATTGGTTTTTCAGGATTTGGAGTGATGCTTGGTCACGTCTTCATGGAGCCAGCCACCATCAATTACCCTTTCGAAAAGGGACCTCTCAGCTCGAGATTCAGGTGACTAGTAGCTGCAAAAATTTAAAAAAAACCACGAACAAATACATTTTTATTCAAAATCAAGACAATTCAGAATTCAAGAACCCCTTAAACAAAAAACTCCGGTTTTCTCTTCAACACTTATTATTGTTGTCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACGACGAGCTTGAAATAAATA</pcr_primer_p1>
		<pcr_primer_p2>AATAGCTGACTTGTACAATTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAACGACGAGCTTGAAATAAATACAAATCGGGAGTTTTCAGCTCGCCATCAGCAGTGTCCCATCAAATACCATCCAAAGACGATCCAACTATAAATTCGTCGGAATGCCCAATGAGACCGACGGAACCGTGGCAGGCGATTTGAACTATGGTCTTCACACCGTTTTCTTCACCGAGCTTTTCCGAGGTGCGTTTTCAAGAGGATGAAAAATTTTGTTTGTGGCATACAAAAATTGTACAAGTCAGCTATT</canonical_amplicon>
		<polymorphic_amplicon>TAACGACGAGCTTGAAATAAATACAAATCGGGAGTTTTCAGCTCGCCATCAGCAGTGTCYCATCAAATACCATCCAAAGACGATCCAACTATAAATTCGTCGGAATGCCCAATGAGACCGACGGAACCGTGGCAGGCGATTTGAACTATGGTCTTCACACCGTTTTCTTCACCGAGCTTTTCCGAGGTGCGTTTTCAAGAGGATGAAAAATTTTGTTTGTGGCATACAAAAATTGTACAAGTCAGCTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31423</snp_id>
        <super_contig>c006300932.Contig2</super_contig>
        <contig_pos>51868</contig_pos>
        <strand>+</strand>
        <context>TAGTAGCTGC[A/T]AAAATTTAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCTTTCGAAAAGGGACCTCTCAGCTCGAGATTCAGGTGACTAGTAGCTGC</left_flank>
        <right_flank>AAAATTTAAAAAAAACCACGAACAAATACATTTTTATTCAAAATCAAGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAGTGTGGCAGTGCTGACAAAAGGCATGTTCGGAAGAATGCCGGCCCAGGTTTGTTCTTAACGACGAGCTTGAAATAAATACAAATCGGGAGTTTTCAGCTCGCCATCAGCAGTGTCCCATCAAATACCATCCAAAGACGATCCAACTATAAATTCGTCGGAATGCCCAATGAGACCGACGGAACCGTGGCAGGCGATTTGAACTATGGTCTTCACACCGTTTTCTTCACCGAGCTTTTCCGAGGTGCGTTTTCAAGAGGATGAAAAATTTTGTTTGTGGCATACAAAAATTGTACAAGTCAGCTATTTCAAGTCAGCTATTAAAATTTCAATTCTAAATCAGGTTGTTTGTTAAGTTATTTGGAATATGAACTACAACTCATTGGTTTTTCAGGATTTGGAGTGATGCTTGGTCACGTCTTCATGGAGCCAGCCACCATCAATTACCCTTTCGAAAAGGGACCTCTCAGCTCGAGATTCAGGTGACTAGTAGCTGCAAAAATTTAAAAAAAACCACGAACAAATACATTTTTATTCAAAATCAAGACAATTCAGAATTCAAGAACCCCTTAAACAAAAAACTCCGGTTTTCTCTTCAACACTTATTATTGTTGTCCGAAAAAATTGGAGTTAGAGAGTAGTTTTTGCAGTCTGAATACGGTATGCACCTCGAAGCGGCAAGCCTAAATAGCACATACTCGGTGGAGACGCAGAGAAATTTTTTGTTCAACTGTCTGCGTCTCGACTCCAATTTTTTCGCACAACAATAATATATTATTTCCAGAGGAGAGCACGCCCTTCGTCGTTATCCATCTGGAGAGGAACGTTGCATCGCCTGCAAATTGTGCGAAGCTATTTGCCCCGCTCAAGCGATCACCATCGAAGCAGAGACCCGTCCAGATGGTTCCCGTCGTACAACTCGTTATGATATCGACATGACTAAGTGTATCTATTGTGGACTTTGTCAAGAGGCTTGTCCAGTTGACGCTATTGTCGAA</canonical>
            <polymorphic>AAAAGTGTGGCAGTGCTGACAAAAGGCATGTTCGGAAGAATGCCGGCCCAGGTTTGTTCTTAACGACGAGCTTGAAATAAATACAAATCGGGAGTTTTCAGCTCGCCATCAGCAGTGTCCCATCAAATACCATCCAAAGACGATCCAACTATAAATTCGTCGGAATGCCCAATGAGACCGACGGAACCGTGGCAGGCGATTTGAACTATGGTCTTCACACCGTTTTCTTCACCGAGCTTTTCCGAGGTGCGTTTTCAAGAGGATGAAAAATTTTGTTTGTGGCATACAAAAATTGTACAAGTCAGCTATTTCAAGTCAGCTATTAAAATTTCAATTCTAAATCAGGTTGTTTGTTAAGTTATTTGGAATATGAACTACAACTCATTGGTTTTTCAGGATTTGGAGTGATGCTTGGTCACGTCTTCATGGAGCCAGCCACCATCAATTACCCTTTCGAAAAGGGACCTCTCAGCTCGAGATTCAGGTGACTAGTAGCTGCWAAAATTTAAAAAAAACCACGAACAAATACATTTTTATTCAAAATCAAGACAATTCAGAATTCAAGAACCCCTTAAACAAAAAACTCCGGTTTTCTCTTCAACACTTATTATTGTTGTCCGAAAAAATTGGAGTTAGAGAGTAGTTTTTGCAGTCTGAATACGGTATGCACCTCGAAGCGGCAAGCCTAAATAGCACATACTCGGTGGAGACGCAGAGAAATTTTTTGTTCAACTGTCTGCGTCTCGACTCCAATTTTTTCGCACAACAATAATATATTATTTCCAGAGGAGAGCACGCCCTTCGTCGTTATCCATCTGGAGAGGAACGTTGCATCGCCTGCAAATTGTGCGAAGCTATTTGCCCCGCTCAAGCGATCACCATCGAAGCAGAGACCCGTCCAGATGGTTCCCGTCGTACAACTCGTTATGATATCGACATGACTAAGTGTATCTATTGTGGACTTTGTCAAGAGGCTTGTCCAGTTGACGCTATTGTCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>498 164 160 151 18 9</canonical_bands>
                <polymorphic_bands>649 164 160 18 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAATTCTAAATCAGGTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTTTAAGGGGTTCTTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCAATTCTAAATCAGGTTGTTTGTTAAGTTATTTGGAATATGAACTACAACTCATTGGTTTTTCAGGATTTGGAGTGATGCTTGGTCACGTCTTCATGGAGCCAGCCACCATCAATTACCCTTTCGAAAAGGGACCTCTCAGCTCGAGATTCAGGTGACTAGTAGCTGCAAAAATTTAAAAAAAACCACGAACAAATACATTTTTATTCAAAATCAAGACAATTCAGAATTCAAGAACCCCTTAAACAA</canonical_amplicon>
		<polymorphic_amplicon>TTCAATTCTAAATCAGGTTGTTTGTTAAGTTATTTGGAATATGAACTACAACTCATTGGTTTTTCAGGATTTGGAGTGATGCTTGGTCACGTCTTCATGGAGCCAGCCACCATCAATTACCCTTTCGAAAAGGGACCTCTCAGCTCGAGATTCAGGTGACTAGTAGCTGCWAAAATTTAAAAAAAACCACGAACAAATACATTTTTATTCAAAATCAAGACAATTCAGAATTCAAGAACCCCTTAAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31424</snp_id>
        <super_contig>c006400799.Contig1</super_contig>
        <contig_pos>28625</contig_pos>
        <strand>+</strand>
        <context>AGTTCCAGTT[A/G]ATTGAAGCGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTACCTTGATCTTATCTTGTTGAAGACAAATTTTAAAGAAGTTCCAGTT</left_flank>
        <right_flank>ATTGAAGCGAAGCAAAGCGAATTGAAGCGTTAAGAATCTTAAGTCCAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAACTATCCCGCTTCATTAACCCGTAAATCTCCTGTTGAACAGGATCAAATGCATGCGGCGCTGGATGTTCCAAAGCTTCCCTGGCAATCCCCTGATTGGCGGCATTTATATTAATTTGCATGTCTGCTTCTGGCGCCAGAAAATCGTGATAAATCGTGCGAATCATCTCATTGACAGTTCCTTGGTTCGTCTGGACCCTCAACTGTTCGCAAGACTGCCAAAACAAAAAGTTGCACTCCGAATGCTCTTTTTTCAGATACTTCAAAAACTCTTCTTGTCCTCGTTGGCTTTTCAGAAGGTTATCGAAATTGACAGCCCACTCGCGGACAACTTCGACAGTCAATGGCTCGAAAGGGGTGACTGTAGCTGAGGAACGACAGCATGAGAATGAGAACACCATGATGTCTGAAATAAGCCGCTTCCGATACCTCTTATCTTCTTAGGTCCCTTACCTTGATCTTATCTTGTTGAAGACAAATTTTAAAGAAGTTCCAGTTGATTGAAGCGAAGCAAAGCGAATTGAAGCGTTAAGAATCTTAAGTCCAAACAGTTGAGGCGTTAACAGCGGTAAGAGGATAGCAAAAGCGAATTGAAGCGTTAAAAATTACGACTCCAAACAGTTGAGGTATTGATAAGAAGACGTCGTCAGGAAGTTGCTGCGTGTGTGTGTGTGTGCTGTGATAGACAAGCGACTTCTGAGGAGAGTGCTCGAGAAACGAGCAGAAAGTCCGTACCGTGGCACTGAGTGGCACTTTAAGGATAACCTCTTTTCTTTTCCTACTATTTCAGCTATTCGACAAAACTCTCTACTCCCTCTTACCTCTGCAATTAGTCGATTCCCGGAGGCATTTGCTGTCTTCTACCTACTTTGATTCGGTTGCTGTCATTGGACTCGTTATCAACAAGCTAAATTCAGCCAAGATAAGTGATCAATAAGAAAGTGATAAGATTTATAGGGGAGCTATAAGTTATACTGGTACCATTTGGCATCATATTAT</canonical>
            <polymorphic>ATAACTATCCCGCTTCATTAACCCGTAAATCTCCTGTTGAACAGGATCAAATGCATGCGGCGCTGGATGTTCCAAAGCTTCCCTGGCAATCCCCTGATTGGCGGCATTTATATTAATTTGCATGTCTGCTTCTGGCGCCAGAAAATCGTGATAAATCGTGCGAATCATCTCATTGACAGTTCCTTGGTTCGTCTGGACCCTCAACTGTTCGCAAGACTGCCAAAACAAAAAGTTGCACTCCGAATGCTCTTTTTTCAGATACTTCAAAAACTCTTCTTGTCCTCGTTGGCTTTTCAGAAGGTTATCGAAATTGACAGCCCACTCGCGGACAACTTCGACAGTCAATGGCTCGAAAGGGGTGACTGTAGCTGAGGAACGACAGCATGAGAATGAGAACACCATGATGTCTGAAATAAGCCGCTTCCGATACCTCTTATCTTCTTAGGTCCCTTACCTTGATCTTATCTTGTTGAAGACAAATTTTAAAGAAGTTCCAGTTRATTGAAGCGAAGCAAAGCGAATTGAAGCGTTAAGAATCTTAAGTCCAAACAGTTGAGGCGTTAACAGCGGTAAGAGGATAGCAAAAGCGAATTGAAGCGTTAAAAATTACGACTCCAAACAGTTGAGGTATTGATAAGAAGACGTCGTCAGGAAGTTGCTGCGTGTGTGTGTGTGTGCTGTGATAGACAAGCGACTTCTGAGGAGAGTGCTCGAGAAACGAGCAGAAAGTCCGTACCGTGGCACTGAGTGGCACTTTAAGGATAACCTCTTTTCTTTTCCTACTATTTCAGCTATTCGACAAAACTCTCTACTCCCTCTTACCTCTGCAATTAGTCGATTCCCGGAGGCATTTGCTGTCTTCTACCTACTTTGATTCGGTTGCTGTCATTGGACTCGTTATCAACAAGCTAAATTCAGCCAAGATAAGTGATCAATAAGAAAGTGATAAGATTTATAGGGGAGCTATAAGTTATACTGGTACCATTTGGCATCATATTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACACCATGATGTCTGAAATAAG</pcr_primer_p1>
		<pcr_primer_p2>CGTCTTCTTATCAATACCTCAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACACCATGATGTCTGAAATAAGCCGCTTCCGATACCTCTTATCTTCTTAGGTCCCTTACCTTGATCTTATCTTGTTGAAGACAAATTTTAAAGAAGTTCCAGTTGATTGAAGCGAAGCAAAGCGAATTGAAGCGTTAAGAATCTTAAGTCCAAACAGTTGAGGCGTTAACAGCGGTAAGAGGATAGCAAAAGCGAATTGAAGCGTTAAAAATTACGACTCCAAACAGTTGAGGTATTGATAAGAAGACG</canonical_amplicon>
		<polymorphic_amplicon>AACACCATGATGTCTGAAATAAGCCGCTTCCGATACCTCTTATCTTCTTAGGTCCCTTACCTTGATCTTATCTTGTTGAAGACAAATTTTAAAGAAGTTCCAGTTRATTGAAGCGAAGCAAAGCGAATTGAAGCGTTAAGAATCTTAAGTCCAAACAGTTGAGGCGTTAACAGCGGTAAGAGGATAGCAAAAGCGAATTGAAGCGTTAAAAATTACGACTCCAAACAGTTGAGGTATTGATAAGAAGACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31425</snp_id>
        <super_contig>c006400799.Contig1</super_contig>
        <contig_pos>31559</contig_pos>
        <strand>+</strand>
        <context>GGGCGCTATT[C/T]ACATAGCGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTCTCTGACACCGAACGACTCGAGAAGTTTGCGATACTGGGCGCTATT</left_flank>
        <right_flank>ACATAGCGAGGATAGCTATCACGCTGCATGAGCACATATATTTGGTTCTG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAGCTCATAAAATGGAAAGTCTTAGGATTTTGGGAGATGGAAAATCCGAGATAATATTCGTGACACTGTCACGGGTTGAAAAGATTTTCGCAGGGTACAAAATATGAAAGGAGTAGACCTGTATGGGGTCATTTTGAGAGTGGAAAAATGGTTGGAGGATAGCTTGTGGACACCGAAGGGAAAGTTTAACTGGGTTACGGTAGACATGAAAGGTGTAAAGGGACATCAGAACTGTATATTGGTTGGTTTTGGAAGGGGTCAAAAAGGGGGAGAAGCATTTTCAGAGGAGGATCGGGGAGATCGGGTGCAGACCCAGGGTGCCAAAGACAACGGGTGTGAATAGAATACAGAAATTTTAGAAGAAGAAGTTTAGGAACGTGCACAGAGACAGAAAGCCACGGCAGAGGAGACTGGAGCCAATTGGGCGACGAACTTCAATCAACAGGCATCTCTCTGACACCGAACGACTCGAGAAGTTTGCGATACTGGGCGCTATTTACATAGCGAGGATAGCTATCACGCTGCATGAGCACATATATTTGGTTCTGAGCCTCGTTGAAGGTGCTAGTCGATGGACGCCCCATGTTGGTGTTGACGAGATCCCGTACGCGTGAATCCAATGAGACCTCCTTTGGACTCAGAATCGAAATGAAGTCTTCATAGATGATCCGCGCCTTTTCCTCGATCTTCTCCGAGTTTCTCTCGCGCTTCAACTCCTCACAAGCCTGCCAGAATAAGATGTTCTCATCGGAGAACTCGCCCTTGAGAAATTCGGCCAGATGCTTTTGTCCGTGACGATACTTCATGAGGTTATCGAACGCGAAACTCCACGAGTAGACGATCTCGTAGGTTGGAGCTGCTTCCGGAGCCAATGGTGGTACTGGCTCCTCCTTGTTCTGAGTAGTTGTTTGACCATCGGCGTTTTCCTGTTGCACGCACCAGCCGCAGAGAATGCCAAAGACCATGGTTGGAGTCTGGAATGAATATAGTCATAAGCG</canonical>
            <polymorphic>GAGAGCTCATAAAATGGAAAGTCTTAGGATTTTGGGAGATGGAAAATCCGAGATAATATTCGTGACACTGTCACGGGTTGAAAAGATTTTCGCAGGGTACAAAATATGAAAGGAGTAGACCTGTATGGGGTCATTTTGAGAGTGGAAAAATGGTTGGAGGATAGCTTGTGGACACCGAAGGGAAAGTTTAACTGGGTTACGGTAGACATGAAAGGTGTAAAGGGACATCAGAACTGTATATTGGTTGGTTTTGGAAGGGGTCAAAAAGGGGGAGAAGCATTTTCAGAGGAGGATCGGGGAGATCGGGTGCAGACCCAGGGTGCCAAAGACAACGGGTGTGAATAGAATACAGAAATTTTAGAAGAAGAAGTTTAGGAACGTGCACAGAGACAGAAAGCCACGGCAGAGGAGACTGGAGCCAATTGGGCGACGAACTTCAATCAACAGGCATCTCTCTGACACCGAACGACTCGAGAAGTTTGCGATACTGGGCGCTATTYACATAGCGAGGATAGCTATCACGCTGCATGAGCACATATATTTGGTTCTGAGCCTCGTTGAAGGTGCTAGTCGATGGACGCCCCATGTTGGTGTTGACGAGATCCCGTACGCGTGAATCCAATGAGACCTCCTTTGGACTCAGAATCGAAATGAAGTCTTCATAGATGATCCGCGCCTTTTCCTCGATCTTCTCCGAGTTTCTCTCGCGCTTCAACTCCTCACAAGCCTGCCAGAATAAGATGTTCTCATCGGAGAACTCGCCCTTGAGAAATTCGGCCAGATGCTTTTGTCCGTGACGATACTTCATGAGGTTATCGAACGCGAAACTCCACGAGTAGACGATCTCGTAGGTTGGAGCTGCTTCCGGAGCCAATGGTGGTACTGGCTCCTCCTTGTTCTGAGTAGTTGTTTGACCATCGGCGTTTTCCTGTTGCACGCACCAGCCGCAGAGAATGCCAAAGACCATGGTTGGAGTCTGGAATGAATATAGTCATAAGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAACGGGTGTGAATAGAATAC</pcr_primer_p1>
		<pcr_primer_p2>CATCGACTAGCACCTTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACAACGGGTGTGAATAGAATACAGAAATTTTAGAAGAAGAAGTTTAGGAACGTGCACAGAGACAGAAAGCCACGGCAGAGGAGACTGGAGCCAATTGGGCGACGAACTTCAATCAACAGGCATCTCTCTGACACCGAACGACTCGAGAAGTTTGCGATACTGGGCGCTATTTACATAGCGAGGATAGCTATCACGCTGCATGAGCACATATATTTGGTTCTGAGCCTCGTTGAAGGTGCTAGTCGATG</canonical_amplicon>
		<polymorphic_amplicon>ACAACGGGTGTGAATAGAATACAGAAATTTTAGAAGAAGAAGTTTAGGAACGTGCACAGAGACAGAAAGCCACGGCAGAGGAGACTGGAGCCAATTGGGCGACGAACTTCAATCAACAGGCATCTCTCTGACACCGAACGACTCGAGAAGTTTGCGATACTGGGCGCTATTYACATAGCGAGGATAGCTATCACGCTGCATGAGCACATATATTTGGTTCTGAGCCTCGTTGAAGGTGCTAGTCGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31426</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>75540</contig_pos>
        <strand></strand>
        <context>atttaaaata[G/A]gaccactact</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTAGGGCGTCGCTGGCAACTTTTGGACGGAGGTTGTTACGATTTAAAATA</left_flank>
        <right_flank>GACCACTACTAAAGGCAGTCAATTTTTGACAAACTTATGAAGGCTCTGAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGTAAAGATGATGAGATTTAGCATTTGGGTTGAAACCCAAATGCTGTAAATTTGAAAATGCCGATGATGTGTTTCCAGTGTAGAATTTCACTTAAGTATGCTAGGGTCGCAGAGATGTTATATTTTTCTAGTCTCAATATTCAATCAGATCATTCAACAAATTCTATATTTTTACAGAAAATGTTGTCCCCGAGTTATTAAAGACTACTGAATCTTACTGGATACTCATTGGACTCGGTATTCAACGAAACCGGAAACGAAGCGGTATTGGATACGGAGTCTGTGCTTTCCACACTAAATTTGTCTGTTATATGTCTTTAATAAGTTTAATTCTGTTTTACTAGTTGCGTTATATTAATTCTATATACTATGCAGAACAAAAATTACAGTATGCAAAAATGGGCAGATCTTCAGCTCTGTATTTTGAAATGCCCCAAGACAAGACAACTAGGGCGTCGCTGGCAACTTTTGGACGGAGGTTGTTACGATTTAAAATAGGACCACTACTAAAGGCAGTCAATTTTTGACAAACTTATGAAGGCTCTGACCTAGTGGTAGTTTCAACTTTGGACCAAAATCTGACCACGGCCCGCTCAAAATCCGTTTTCGGGCAAGTGCGGACCAGAACATAGCCAATATCCGTCCAAAAGCCAAACCCCTCCACTTCTGACTAGAAGTTACAAGACGACGGCCATGAATGACTAAAAATTTCAAATTCGGGCCATCAATCGAATTTATTAATAACGGTATGTGAGCTCTCAAACTGAAATTACTGCAATTCTTATTTGCTCTTCGCTCTTTATGATAAAATGTTTCTAAAGGATTTATTTTCAACTTTTAATAGGTTAGAGCTCAGGATCTCTGTGTAACTTTATATAGATAAGAAACTTTAAGAACTCTCGAAAAACTATAGATTTAATCAATTAACTTACTGGCTCTCCTCAGGTTTCTCTTAGATCTATCCTGGGCATAATAGAGCATTGCATCGTTCCAGTAGT</canonical>
            <polymorphic>ATAGTAAAGATGATGAGATTTAGCATTTGGGTTGAAACCCAAATGCTGTAAATTTGAAAATGCCGATGATGTGTTTCCAGTGTAGAATTTCACTTAAGTATGCTAGGGTCGCAGAGATGTTATATTTTTCTAGTCTCAATATTCAATCAGATCATTCAACAAATTCTATATTTTTACAGAAAATGTTGTCCCCGAGTTATTAAAGACTACTGAATCTTACTGGATACTCATTGGACTCGGTATTCAACGAAACCGGAAACGAAGCGGTATTGGATACGGAGTCTGTGCTTTCCACACTAAATTTGTCTGTTATATGTCTTTAATAAGTTTAATTCTGTTTTACTAGTTGCGTTATATTAATTCTATATACTATGCAGAACAAAAATTACAGTATGCAAAAATGGGCAGATCTTCAGCTCTGTATTTTGAAATGCCCCAAGACAAGACAACTAGGGCGTCGCTGGCAACTTTTGGACGGAGGTTGTTACGATTTAAAATARGACCACTACTAAAGGCAGTCAATTTTTGACAAACTTATGAAGGCTCTGACCTAGTGGTAGTTTCAACTTTGGACCAAAATCTGACCACGGCCCGCTCAAAATCCGTTTTCGGGCAAGTGCGGACCAGAACATAGCCAATATCCGTCCAAAAGCCAAACCCCTCCACTTCTGACTAGAAGTTACAAGACGACGGCCATGAATGACTAAAAATTTCAAATTCGGGCCATCAATCGAATTTATTAATAACGGTATGTGAGCTCTCAAACTGAAATTACTGCAATTCTTATTTGCTCTTCGCTCTTTATGATAAAATGTTTCTAAAGGATTTATTTTCAACTTTTAATAGGTTAGAGCTCAGGATCTCTGTGTAACTTTATATAGATAAGAAACTTTAAGAACTCTCGAAAAACTATAGATTTAATCAATTAACTTACTGGCTCTCCTCAGGTTTCTCTTAGATCTATCCTGGGCATAATAGAGCATTGCATCGTTCCAGTAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>500 379 71 50</canonical_bands>
                <polymorphic_bands>571 379 50</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 279 100 71 32 18</canonical_bands>
                <polymorphic_bands>571 279 100 32 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCTTCAGCTCTGTATTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>TGCAGTAATTTCAGTTTGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>372</pcr_amplicon_size>
		<canonical_amplicon>GATCTTCAGCTCTGTATTTTGAAATGCCCCAAGACAAGACAACTAGGGCGTCGCTGGCAACTTTTGGACGGAGGTTGTTACGATTTAAAATAGGACCACTACTAAAGGCAGTCAATTTTTGACAAACTTATGAAGGCTCTGACCTAGTGGTAGTTTCAACTTTGGACCAAAATCTGACCACGGCCCGCTCAAAATCCGTTTTCGGGCAAGTGCGGACCAGAACATAGCCAATATCCGTCCAAAAGCCAAACCCCTCCACTTCTGACTAGAAGTTACAAGACGACGGCCATGAATGACTAAAAATTTCAAATTCGGGCCATCAATCGAATTTATTAATAACGGTATGTGAGCTCTCAAACTGAAATTACTGCA</canonical_amplicon>
		<polymorphic_amplicon>GATCTTCAGCTCTGTATTTTGAAATGCCCCAAGACAAGACAACTAGGGCGTCGCTGGCAACTTTTGGACGGAGGTTGTTACGATTTAAAATARGACCACTACTAAAGGCAGTCAATTTTTGACAAACTTATGAAGGCTCTGACCTAGTGGTAGTTTCAACTTTGGACCAAAATCTGACCACGGCCCGCTCAAAATCCGTTTTCGGGCAAGTGCGGACCAGAACATAGCCAATATCCGTCCAAAAGCCAAACCCCTCCACTTCTGACTAGAAGTTACAAGACGACGGCCATGAATGACTAAAAATTTCAAATTCGGGCCATCAATCGAATTTATTAATAACGGTATGTGAGCTCTCAAACTGAAATTACTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31427</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>79195</contig_pos>
        <strand>+</strand>
        <context>AAGCCCTTCT[C/T]TTYCAGSGGC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACGGTTATTCTATTGCTCCAAGGTTTCTCCAGATTGTGAAAGCCCTTCT</left_flank>
        <right_flank>TTACAGTGGCCCTTCTATTTTGCGGACCTTTTTTTTTACAAAAGTTTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAACTTGGTAAAGAAAACTGTTACTTTTTAACCGAATCCCGATTGTTGAAATCGATGTTATCTCCGTTCAAATCGCGCACACTCAATGATTTTGTTCCGATTCTGTCAAATGTTATAAATGAGTGTCGAATTGTTTTGTGAATGGATTAGAGAGAGGGGAGTGGTGACTTCATCTATTTCTTAGCTTATCAAATTAAGATGAATGAAAATGAGAAGAAAAAAAAACACATATGTATACATGAAGAAAAGAAAGTGTGGGTAACAACTGTCAATCATATCATATCAGCAGAAAGAAACCGCTGGAAATGCAGTTCTAATTTTTGTCAGCTTCATTGATTCTGTTTAATGTTTAGAGGGTGATTGAGAAAGATAATTTCCAGCATTTTTGAGTTCCGAAATGATTCTAAAGCTTCGCAACTTGAGCAACCGTAAAACATGTATTAAAAAGTACGGTTATTCTATTGCTCCAAGGTTTCTCCAGATTGTGAAAGCCCTTCTATTACAGTGGCCCTTCTATTTTGCGGACCTTTTTTTTTACAAAAGTTTTCTTTAAAAAATTCCATGCATTCTCGTTCAAAATTCATCAATCTCACCAAAATTGAGCAAGTTTTTGAGCAAAAAAAGGGGTTTTTCAACAAATTTCTGGAAAATTTCTCACTGGAAACGTATGGAAAAATTTTTATTTCAAATAAAAAAACATTTTGAAAATACTCTTCTATTTTTCCGTACCCTTCTCACTATCAGAGAACCCTTTCATTAAAAGGCCCTTCTAATACAGGTTTTACGGTATTCTGGAAATTGTGGAAAACGCTCTAAACCTTCGAAACCTAATCTACTTTATTGATTTCTCAATTCTTAAATTTTTCAGACCATTCCCAATCACTGCACTCCCCCATCCATTCCAAATCGAATTTTTAAAAATCTCACTGTTTTGTGCTGTTCTCATCGTTCTCATTCTCAGTTGTTCCTTTCAAATTACTTGTCGAGTGAAATCTTTTT</canonical>
            <polymorphic>GAAACTTGGTAAAGAAAACTGTTACTTTTTAACCGAATCCCGATTGTTGAAATCGATGTTATCTCCGTTCAAATCGCGCACACTCAATGATTTTGTTCCGATTCTGTCAAATGTTATAAATGAGTGTCGAATTGTTTTGTGAATGGATTAGAGAGAGGGGAGTGGTGACTTCATCTATTTCTTAGCTTATCAAATTAAGATGAATGAAAATGAGAAGAAAAAAAAACACATATGTATACATGAAGAAAAGAAAGTGTGGGTAACAACTGTCAATCATATCATATCAGCAGAAAGAAACCGCTGGAAATGCAGTTCTAATTTTTGTCAGCTTCATTGATTCTGTTTAATGTTTAGAGGGTGATTGAGAAAGATAATTTCCAGCATTTTTGAGTTCCGAAATGATTCTAAAGCTTCGCAACTTGAGCAACCGTAAAACATGTATTAAAAAGTACGGTTATTCTATTGCTCCAAGGTTTCTCCAGATTGTGAAAGCCCTTCTYTTACAGTGGCCCTTCTATTTTGCGGACCTTTTTTTTTACAAAAGTTTTCTTTAAAAAATTCCATGCATTCTCGTTCAAAATTCATCAATCTCACCAAAATTGAGCAAGTTTTTGAGCAAAAAAAGGGGTTTTTCAACAAATTTCTGGAAAATTTCTCACTGGAAACGTATGGAAAAATTTTTATTTCAAATAAAAAAACATTTTGAAAATACTCTTCTATTTTTCCGTACCCTTCTCACTATCAGAGAACCCTTTCATTAAAAGGCCCTTCTAATACAGGTTTTACGGTATTCTGGAAATTGTGGAAAACGCTCTAAACCTTCGAAACCTAATCTACTTTATTGATTTCTCAATTCTTAAATTTTTCAGACCATTCCCAATCACTGCACTCCCCCATCCATTCCAAATCGAATTTTTAAAAATCTCACTGTTTTGTGCTGTTCTCATCGTTCTCATTCTCAGTTGTTCCTTTCAAATTACTTGTCGAGTGAAATCTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACATGTATTAAAAAGTACGGTTA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCCATACGTTTCCAGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAACATGTATTAAAAAGTACGGTTATTCTATTGCTCCAAGGTTTCTCCAGATTGTGAAAGCCCTTCTATTACAGTGGCCCTTCTATTTTGCGGACCTTTTTTTTTACAAAAGTTTTCTTTAAAAAATTCCATGCATTCTCGTTCAAAATTCATCAATCTCACCAAAATTGAGCAAGTTTTTGAGCAAAAAAAGGGGTTTTTCAACAAATTTCTGGAAAATTTCTCACTGGAAACGTATGGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAACATGTATTAAAAAGTACGGTTATTCTATTGCTCCAAGGTTTCTCCAGATTGTGAAAGCCCTTCTYTTACAGTGGCCCTTCTATTTTGCGGACCTTTTTTTTTACAAAAGTTTTCTTTAAAAAATTCCATGCATTCTCGTTCAAAATTCATCAATCTCACCAAAATTGAGCAAGTTTTTGAGCAAAAAAAGGGGTTTTTCAACAAATTTCTGGAAAATTTCTCACTGGAAACGTATGGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31428</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>79198</contig_pos>
        <strand>+</strand>
        <context>CCCTTCTYTT[C/T]CAGSGGCCCT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTTATTCTATTGCTCCAAGGTTTCTCCAGATTGTGAAAGCCCTTCTATT</left_flank>
        <right_flank>CAGTGGCCCTTCTATTTTGCGGACCTTTTTTTTTACAAAAGTTTTCTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTGGTAAAGAAAACTGTTACTTTTTAACCGAATCCCGATTGTTGAAATCGATGTTATCTCCGTTCAAATCGCGCACACTCAATGATTTTGTTCCGATTCTGTCAAATGTTATAAATGAGTGTCGAATTGTTTTGTGAATGGATTAGAGAGAGGGGAGTGGTGACTTCATCTATTTCTTAGCTTATCAAATTAAGATGAATGAAAATGAGAAGAAAAAAAAACACATATGTATACATGAAGAAAAGAAAGTGTGGGTAACAACTGTCAATCATATCATATCAGCAGAAAGAAACCGCTGGAAATGCAGTTCTAATTTTTGTCAGCTTCATTGATTCTGTTTAATGTTTAGAGGGTGATTGAGAAAGATAATTTCCAGCATTTTTGAGTTCCGAAATGATTCTAAAGCTTCGCAACTTGAGCAACCGTAAAACATGTATTAAAAAGTACGGTTATTCTATTGCTCCAAGGTTTCTCCAGATTGTGAAAGCCCTTCTATTACAGTGGCCCTTCTATTTTGCGGACCTTTTTTTTTACAAAAGTTTTCTTTAAAAAATTCCATGCATTCTCGTTCAAAATTCATCAATCTCACCAAAATTGAGCAAGTTTTTGAGCAAAAAAAGGGGTTTTTCAACAAATTTCTGGAAAATTTCTCACTGGAAACGTATGGAAAAATTTTTATTTCAAATAAAAAAACATTTTGAAAATACTCTTCTATTTTTCCGTACCCTTCTCACTATCAGAGAACCCTTTCATTAAAAGGCCCTTCTAATACAGGTTTTACGGTATTCTGGAAATTGTGGAAAACGCTCTAAACCTTCGAAACCTAATCTACTTTATTGATTTCTCAATTCTTAAATTTTTCAGACCATTCCCAATCACTGCACTCCCCCATCCATTCCAAATCGAATTTTTAAAAATCTCACTGTTTTGTGCTGTTCTCATCGTTCTCATTCTCAGTTGTTCCTTTCAAATTACTTGTCGAGTGAAATCTTTTTTTC</canonical>
            <polymorphic>ACTTGGTAAAGAAAACTGTTACTTTTTAACCGAATCCCGATTGTTGAAATCGATGTTATCTCCGTTCAAATCGCGCACACTCAATGATTTTGTTCCGATTCTGTCAAATGTTATAAATGAGTGTCGAATTGTTTTGTGAATGGATTAGAGAGAGGGGAGTGGTGACTTCATCTATTTCTTAGCTTATCAAATTAAGATGAATGAAAATGAGAAGAAAAAAAAACACATATGTATACATGAAGAAAAGAAAGTGTGGGTAACAACTGTCAATCATATCATATCAGCAGAAAGAAACCGCTGGAAATGCAGTTCTAATTTTTGTCAGCTTCATTGATTCTGTTTAATGTTTAGAGGGTGATTGAGAAAGATAATTTCCAGCATTTTTGAGTTCCGAAATGATTCTAAAGCTTCGCAACTTGAGCAACCGTAAAACATGTATTAAAAAGTACGGTTATTCTATTGCTCCAAGGTTTCTCCAGATTGTGAAAGCCCTTCTATTYCAGTGGCCCTTCTATTTTGCGGACCTTTTTTTTTACAAAAGTTTTCTTTAAAAAATTCCATGCATTCTCGTTCAAAATTCATCAATCTCACCAAAATTGAGCAAGTTTTTGAGCAAAAAAAGGGGTTTTTCAACAAATTTCTGGAAAATTTCTCACTGGAAACGTATGGAAAAATTTTTATTTCAAATAAAAAAACATTTTGAAAATACTCTTCTATTTTTCCGTACCCTTCTCACTATCAGAGAACCCTTTCATTAAAAGGCCCTTCTAATACAGGTTTTACGGTATTCTGGAAATTGTGGAAAACGCTCTAAACCTTCGAAACCTAATCTACTTTATTGATTTCTCAATTCTTAAATTTTTCAGACCATTCCCAATCACTGCACTCCCCCATCCATTCCAAATCGAATTTTTAAAAATCTCACTGTTTTGTGCTGTTCTCATCGTTCTCATTCTCAGTTGTTCCTTTCAAATTACTTGTCGAGTGAAATCTTTTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>282 248 161 142 74 52 24 17</canonical_bands>
                <polymorphic_bands>334 248 161 142 74 24 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACATGTATTAAAAAGTACGGTTA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCCATACGTTTCCAGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAACATGTATTAAAAAGTACGGTTATTCTATTGCTCCAAGGTTTCTCCAGATTGTGAAAGCCCTTCTATTACAGTGGCCCTTCTATTTTGCGGACCTTTTTTTTTACAAAAGTTTTCTTTAAAAAATTCCATGCATTCTCGTTCAAAATTCATCAATCTCACCAAAATTGAGCAAGTTTTTGAGCAAAAAAAGGGGTTTTTCAACAAATTTCTGGAAAATTTCTCACTGGAAACGTATGGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAACATGTATTAAAAAGTACGGTTATTCTATTGCTCCAAGGTTTCTCCAGATTGTGAAAGCCCTTCTATTYCAGTGGCCCTTCTATTTTGCGGACCTTTTTTTTTACAAAAGTTTTCTTTAAAAAATTCCATGCATTCTCGTTCAAAATTCATCAATCTCACCAAAATTGAGCAAGTTTTTGAGCAAAAAAAGGGGTTTTTCAACAAATTTCTGGAAAATTTCTCACTGGAAACGTATGGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31429</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>79202</contig_pos>
        <strand>+</strand>
        <context>TCTYTTYCAG[C/G]GGCCCTTCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTCTATTGCTCCAAGGTTTCTCCAGATTGTGAAAGCCCTTCTATTACAG</left_flank>
        <right_flank>GGCCCTTCTATTTTGCGGACCTTTTTTTTTACAAAAGTTTTCTTTAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTAAAGAAAACTGTTACTTTTTAACCGAATCCCGATTGTTGAAATCGATGTTATCTCCGTTCAAATCGCGCACACTCAATGATTTTGTTCCGATTCTGTCAAATGTTATAAATGAGTGTCGAATTGTTTTGTGAATGGATTAGAGAGAGGGGAGTGGTGACTTCATCTATTTCTTAGCTTATCAAATTAAGATGAATGAAAATGAGAAGAAAAAAAAACACATATGTATACATGAAGAAAAGAAAGTGTGGGTAACAACTGTCAATCATATCATATCAGCAGAAAGAAACCGCTGGAAATGCAGTTCTAATTTTTGTCAGCTTCATTGATTCTGTTTAATGTTTAGAGGGTGATTGAGAAAGATAATTTCCAGCATTTTTGAGTTCCGAAATGATTCTAAAGCTTCGCAACTTGAGCAACCGTAAAACATGTATTAAAAAGTACGGTTATTCTATTGCTCCAAGGTTTCTCCAGATTGTGAAAGCCCTTCTATTACAGTGGCCCTTCTATTTTGCGGACCTTTTTTTTTACAAAAGTTTTCTTTAAAAAATTCCATGCATTCTCGTTCAAAATTCATCAATCTCACCAAAATTGAGCAAGTTTTTGAGCAAAAAAAGGGGTTTTTCAACAAATTTCTGGAAAATTTCTCACTGGAAACGTATGGAAAAATTTTTATTTCAAATAAAAAAACATTTTGAAAATACTCTTCTATTTTTCCGTACCCTTCTCACTATCAGAGAACCCTTTCATTAAAAGGCCCTTCTAATACAGGTTTTACGGTATTCTGGAAATTGTGGAAAACGCTCTAAACCTTCGAAACCTAATCTACTTTATTGATTTCTCAATTCTTAAATTTTTCAGACCATTCCCAATCACTGCACTCCCCCATCCATTCCAAATCGAATTTTTAAAAATCTCACTGTTTTGTGCTGTTCTCATCGTTCTCATTCTCAGTTGTTCCTTTCAAATTACTTGTCGAGTGAAATCTTTTTTTCATAT</canonical>
            <polymorphic>GGTAAAGAAAACTGTTACTTTTTAACCGAATCCCGATTGTTGAAATCGATGTTATCTCCGTTCAAATCGCGCACACTCAATGATTTTGTTCCGATTCTGTCAAATGTTATAAATGAGTGTCGAATTGTTTTGTGAATGGATTAGAGAGAGGGGAGTGGTGACTTCATCTATTTCTTAGCTTATCAAATTAAGATGAATGAAAATGAGAAGAAAAAAAAACACATATGTATACATGAAGAAAAGAAAGTGTGGGTAACAACTGTCAATCATATCATATCAGCAGAAAGAAACCGCTGGAAATGCAGTTCTAATTTTTGTCAGCTTCATTGATTCTGTTTAATGTTTAGAGGGTGATTGAGAAAGATAATTTCCAGCATTTTTGAGTTCCGAAATGATTCTAAAGCTTCGCAACTTGAGCAACCGTAAAACATGTATTAAAAAGTACGGTTATTCTATTGCTCCAAGGTTTCTCCAGATTGTGAAAGCCCTTCTATTACAGSGGCCCTTCTATTTTGCGGACCTTTTTTTTTACAAAAGTTTTCTTTAAAAAATTCCATGCATTCTCGTTCAAAATTCATCAATCTCACCAAAATTGAGCAAGTTTTTGAGCAAAAAAAGGGGTTTTTCAACAAATTTCTGGAAAATTTCTCACTGGAAACGTATGGAAAAATTTTTATTTCAAATAAAAAAACATTTTGAAAATACTCTTCTATTTTTCCGTACCCTTCTCACTATCAGAGAACCCTTTCATTAAAAGGCCCTTCTAATACAGGTTTTACGGTATTCTGGAAATTGTGGAAAACGCTCTAAACCTTCGAAACCTAATCTACTTTATTGATTTCTCAATTCTTAAATTTTTCAGACCATTCCCAATCACTGCACTCCCCCATCCATTCCAAATCGAATTTTTAAAAATCTCACTGTTTTGTGCTGTTCTCATCGTTCTCATTCTCAGTTGTTCCTTTCAAATTACTTGTCGAGTGAAATCTTTTTTTCATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>282 248 161 142 78 52 24 13</canonical_bands>
                <polymorphic_bands>334 248 161 142 78 24 13</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>128 102 85 80 79 73 66 65 61 53 44 39 28 23 20 17 15 10 5 3 2 2</canonical_bands>
                <polymorphic_bands>128 105 102 80 79 73 66 65 61 53 44 39 28 23 17 15 10 5 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACATGTATTAAAAAGTACGGTTA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCCATACGTTTCCAGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAACATGTATTAAAAAGTACGGTTATTCTATTGCTCCAAGGTTTCTCCAGATTGTGAAAGCCCTTCTATTACAGTGGCCCTTCTATTTTGCGGACCTTTTTTTTTACAAAAGTTTTCTTTAAAAAATTCCATGCATTCTCGTTCAAAATTCATCAATCTCACCAAAATTGAGCAAGTTTTTGAGCAAAAAAAGGGGTTTTTCAACAAATTTCTGGAAAATTTCTCACTGGAAACGTATGGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAACATGTATTAAAAAGTACGGTTATTCTATTGCTCCAAGGTTTCTCCAGATTGTGAAAGCCCTTCTATTACAGSGGCCCTTCTATTTTGCGGACCTTTTTTTTTACAAAAGTTTTCTTTAAAAAATTCCATGCATTCTCGTTCAAAATTCATCAATCTCACCAAAATTGAGCAAGTTTTTGAGCAAAAAAAGGGGTTTTTCAACAAATTTCTGGAAAATTTCTCACTGGAAACGTATGGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31430</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>81264</contig_pos>
        <strand>+</strand>
        <context>ATATATATAT[C/G]TATTTAAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAATGAGTGTCAAGTGATGTATACCCAAATAAGTACACATATATATATAT</left_flank>
        <right_flank>TATTTAAATTTTGCAGTCTCCCAACAGCAGTCTCTCTGTTTCTAATCTAT</right_flank>
        <qual_score>148</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTGATAGAAAGAATTTTCATGAAAAAAGTATGACTCAAAACCTTGCAAACACAACAAAAATTCTCGAGTTTGGCCATTTTACTAGGAAAATTTTTTTCAGCTGAGACAACATTTCTTCGTTTACTGATGTTATCAATCGTGTAGGCCAACATTTCGAAAAGGAGTTGAGAAGTACTCCTTCTAGGTTGAAAAATAAAAAAGAATAATCAGCATTATCAAATCAGAAATCATTCGGAAGGGCAATGACGTGGAACTGCTTACTGCGTGGGTCAGGACACAGTAGAACAAAAAAAGAACGAGAGACAAGAGAGGGAAATGTAAACAAATGGAATGCTTAAATACATTGATGGAGAAAAAAAGAGAATATGATTCACCTTCTCACACTTTACAAGACAAAATGAGCACCGTATGAGAGAGAGAGCAAGAAGAGAGAGAGAAAGAGTTTTGAATGAGTGTCAAGTGATGTATACCCAAATAAGTACACATATATATATATCTATTTAAATTTTGCAGTCTCCCAACAGCAGTCTCTCTGTTTCTAATCTATTATGCAAAACACGCCGGAAATTGGGAAACACGGAAAAGAGGAAGAGAGAGGAACAACATTCCAAAACTACAGTACATATGTTCCGGACCCGAAAAACCACACGTATCTTTCTAGTCTTTTGTCGAGTGATTTGTGTTAAGATAACTCTAGGCTCTCTGAGAGCCTCAGCATCCGTCCAAAAAATTTCTTTGTCAAGTGGATTATTGAGCGCCTCCTGTGCCAGAGGAGCCACTTAAACGAGTGTCTTGCCGGCGGATATGGATTCAAAATGACGAGAAAAGAAAAGGGAGGAAGTCGTAGAAGACTTCAGAAGTTGACTTTCAGAAAAAGAAAGCCAGCAAAACCTTTTACGAGGGGAGAAAGAACTCTCAAGAGGGATTTTAAGCTGATTCAGTTTGTCAACTTCCCAGGAAGGGATAATTGGAAATTTGAATTTTGTTTTGAAAAAAT</canonical>
            <polymorphic>AAACTGATAGAAAGAATTTTCATGAAAAAAGTATGACTCAAAACCTTGCAAACACAACAAAAATTCTCGAGTTTGGCCATTTTACTAGGAAAATTTTTTTCAGCTGAGACAACATTTCTTCGTTTACTGATGTTATCAATCGTGTAGGCCAACATTTCGAAAAGGAGTTGAGAAGTACTCCTTCTAGGTTGAAAAATAAAAAAGAATAATCAGCATTATCAAATCAGAAATCATTCGGAAGGGCAATGACGTGGAACTGCTTACTGCGTGGGTCAGGACACAGTAGAACAAAAAAAGAACGAGAGACAAGAGAGGGAAATGTAAACAAATGGAATGCTTAAATACATTGATGGAGAAAAAAAGAGAATATGATTCACCTTCTCACACTTTACAAGACAAAATGAGCACCGTATGAGAGAGAGAGCAAGAAGAGAGAGAGAAAGAGTTTTGAATGAGTGTCAAGTGATGTATACCCAAATAAGTACACATATATATATATSTATTTAAATTTTGCAGTCTCCCAACAGCAGTCTCTCTGTTTCTAATCTATTATGCAAAACACGCCGGAAATTGGGAAACACGGAAAAGAGGAAGAGAGAGGAACAACATTCCAAAACTACAGTACATATGTTCCGGACCCGAAAAACCACACGTATCTTTCTAGTCTTTTGTCGAGTGATTTGTGTTAAGATAACTCTAGGCTCTCTGAGAGCCTCAGCATCCGTCCAAAAAATTTCTTTGTCAAGTGGATTATTGAGCGCCTCCTGTGCCAGAGGAGCCACTTAAACGAGTGTCTTGCCGGCGGATATGGATTCAAAATGACGAGAAAAGAAAAGGGAGGAAGTCGTAGAAGACTTCAGAAGTTGACTTTCAGAAAAAGAAAGCCAGCAAAACCTTTTACGAGGGGAGAAAGAACTCTCAAGAGGGATTTTAAGCTGATTCAGTTTGTCAACTTCCCAGGAAGGGATAATTGGAAATTTGAATTTTGTTTTGAAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTACAAGACAAAATGAGCAC</pcr_primer_p1>
		<pcr_primer_p2>CCGGAACATATGTACTGTAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACTTTACAAGACAAAATGAGCACCGTATGAGAGAGAGAGCAAGAAGAGAGAGAGAAAGAGTTTTGAATGAGTGTCAAGTGATGTATACCCAAATAAGTACACATATATATATATCTATTTAAATTTTGCAGTCTCCCAACAGCAGTCTCTCTGTTTCTAATCTATTATGCAAAACACGCCGGAAATTGGGAAACACGGAAAAGAGGAAGAGAGAGGAACAACATTCCAAAACTACAGTACATATGTTCCGG</canonical_amplicon>
		<polymorphic_amplicon>ACTTTACAAGACAAAATGAGCACCGTATGAGAGAGAGAGCAAGAAGAGAGAGAGAAAGAGTTTTGAATGAGTGTCAAGTGATGTATACCCAAATAAGTACACATATATATATATSTATTTAAATTTTGCAGTCTCCCAACAGCAGTCTCTCTGTTTCTAATCTATTATGCAAAACACGCCGGAAATTGGGAAACACGGAAAAGAGGAAGAGAGAGGAACAACATTCCAAAACTACAGTACATATGTTCCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31431</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>95415</contig_pos>
        <strand></strand>
        <context>tcgacttgtt[C/T]aggaaagata</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCTGTCCCCCCACCTTTAACTATCAAAAGGTTTAATTTTTCGACTTGTT</left_flank>
        <right_flank>AGGAAAGATAAAAGCTCAACAAAAAGCAGGGAAAATCTACATAATAATAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTGCAGCAAATTTCGTCGAATATATTTTAAAATGCCGCAAAAAACAATGAAAAACAAACCATATTCGACGAAATTTGCTGCAAAATATGAGAAAAACTGAAAAATAGGTAACTTTAATATTTTCCCGCCGGGTTACTGTCGCACTCGTTTCAACTGTTTCCGGTTGTTTACGCTTTCAGATATTTGTTTACAAACATCGCATACACTTCGACTCAACCTTTTTTTTCTCTGACAAGGATAATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAACTATCAAAAGGTTTAATTTTTCGACTTGTTCAGGAAAGATAAAAGCTCAACAAAAAGCAGGGAAAATCTACATAATAATACCGAAAAAAAACATTTTTGGGTTACTGTAGTGGTCGCTTTGGGACCATCGGCCACAGCCCACGGCATTTCTCTCCCACAGCTCCGATTTTTTTACCAGAATAATATACTGTTTTTAAAGATAAAATAAAAATCTGACACCGAAAGTTTTGAATTTCAGAGTTGAAGGAACTCGCCCCTTCCTCCCATTCTATGTCGCCGAAAGAGTTTGCAGTGAAAAAGATTTGGGAAAAAGTCAAGTTGATTCTTGTGTCGTTGATTACGATGCTCTAATGGTTTGTATAACAAATTCAAAGCTTCTCAAAAGTTCGAAAATTACAGGCAAATGGAAAAGAATGCCAACTCTGGCCATCTAACAAAGTAGACCTATCAGATATTGAGCCTGCATTCCGAGAGCACGTCTACAACCTCAATTGGTACTCTTGCCTTCCTCAAAATAGGTAAACTCCAAAA</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTGCAGCAAATTTCGTCGAATATATTTTAAAATGCCGCAAAAAACAATGAAAAACAAACCATATTCGACGAAATTTGCTGCAAAATATGAGAAAAACTGAAAAATAGGTAACTTTAATATTTTCCCGCCGGGTTACTGTCGCACTCGTTTCAACTGTTTCCGGTTGTTTACGCTTTCAGATATTTGTTTACAAACATCGCATACACTTCGACTCAACCTTTTTTTTCTCTGACAAGGATAATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAACTATCAAAAGGTTTAATTTTTCGACTTGTTYAGGAAAGATAAAAGCTCAACAAAAAGCAGGGAAAATCTACATAATAATACCGAAAAAAAACATTTTTGGGTTACTGTAGTGGTCGCTTTGGGACCATCGGCCACAGCCCACGGCATTTCTCTCCCACAGCTCCGATTTTTTTACCAGAATAATATACTGTTTTTAAAGATAAAATAAAAATCTGACACCGAAAGTTTTGAATTTCAGAGTTGAAGGAACTCGCCCCTTCCTCCCATTCTATGTCGCCGAAAGAGTTTGCAGTGAAAAAGATTTGGGAAAAAGTCAAGTTGATTCTTGTGTCGTTGATTACGATGCTCTAATGGTTTGTATAACAAATTCAAAGCTTCTCAAAAGTTCGAAAATTACAGGCAAATGGAAAAGAATGCCAACTCTGGCCATCTAACAAAGTAGACCTATCAGATATTGAGCCTGCATTCCGAGAGCACGTCTACAACCTCAATTGGTACTCTTGCCTTCCTCAAAATAGGTAAACTCCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACTACGAAAAATCTCCTGTC</pcr_primer_p1>
		<pcr_primer_p2>CGGTGTCAGATTTTTATTTTATC</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>AAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAACTATCAAAAGGTTTAATTTTTCGACTTGTTCAGGAAAGATAAAAGCTCAACAAAAAGCAGGGAAAATCTACATAATAATACCGAAAAAAAACATTTTTGGGTTACTGTAGTGGTCGCTTTGGGACCATCGGCCACAGCCCACGGCATTTCTCTCCCACAGCTCCGATTTTTTTACCAGAATAATATACTGTTTTTAAAGATAAAATAAAAATCTGACACCG</canonical_amplicon>
		<polymorphic_amplicon>AAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAACTATCAAAAGGTTTAATTTTTCGACTTGTTYAGGAAAGATAAAAGCTCAACAAAAAGCAGGGAAAATCTACATAATAATACCGAAAAAAAACATTTTTGGGTTACTGTAGTGGTCGCTTTGGGACCATCGGCCACAGCCCACGGCATTTCTCTCCCACAGCTCCGATTTTTTTACCAGAATAATATACTGTTTTTAAAGATAAAATAAAAATCTGACACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31432</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>192285</contig_pos>
        <strand>+</strand>
        <context>ATTACTGTAG[A/T]TTTTGAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGTAGTTCTTAAAAATGGAAATTTCCAAGAACTATGTAGATTACTGTAG</left_flank>
        <right_flank>TTTTGAATTTTTTTTCAATTTACGAATTTTTATGATTACAGTGAGAATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACACGTCTTTTCCGAGTCTGTTTTTCGTTTTTGCTGCGGACCTACCAGTTTCGAGAAAAATTAGTTTTAAATTTAGACCACTGAGCCATTCAATCGACATTTTCTATTGTTTCAATTGTATTTAAGGATTTAGTGTTCACGCGATCCAAAATTCCCATTTTAATTGAAGAAATCAGTAAAAAATCCAGAGTAACCCAAATTCAAAACCTATTTTTCTCGAAACTGGTAGGTCCGCAGCGAAAACGGAAAACAGGTTCGGAAAGGGTGTGTTCTCAGCTTTCGAATGACAACCTTTCGCTTTCGAATCTCGACCCGAAATTCCAACCTAAGTTCACAACCTTCCCTAGTAAGGATTACTGCAGATTTTGGAGTTTCTTTAACTATAGTTATATGTTATACAGTAATCACGAATGTTTCAAAGAAAATACAGTCAGAATTCAAAAATCTACTGTAGTTCTTAAAAATGGAAATTTCCAAGAACTATGTAGATTACTGTAGATTTTGAATTTTTTTTCAATTTACGAATTTTTATGATTACAGTGAGAATGAACAGTTGATTATTGTAGTATTTTTGTAGGTTTTCTAACAATTTTCCAACTTGATTATTGTAGTTCAGACTACTGTAGCTCTATAGTACAAAAACCTCCAATCGAAAAACCTACAATAATCCTTAAAAATGTAATCTCTCACTTGGGTGTAAAGCAACGGGTCAGAAATTGCGCCCCAGTAGTAAACGTGAGATTTTAGAAAAAAAAATCGCTTCTGAATTATCTGAGGGTTTTAAAAATTACGCGTTGCAACTCGTTGATTGGAGCGCGTTTTTGACCCGTTGCCTTGGACCCAAGTGAGAAAAATATTTTTATAGACAAAAAGTTTCAAGGTTCTTCGAAGATTGAGCTGTTTTCGCTGCTCAGCCAAGTTGTGGCTTCAGCCGACGATAATTTTTTCTATGTTTCGCAACTTACATCCACCGTAGCGGCCATCCAGTCAGCCGAAACG</canonical>
            <polymorphic>GACACGTCTTTTCCGAGTCTGTTTTTCGTTTTTGCTGCGGACCTACCAGTTTCGAGAAAAATTAGTTTTAAATTTAGACCACTGAGCCATTCAATCGACATTTTCTATTGTTTCAATTGTATTTAAGGATTTAGTGTTCACGCGATCCAAAATTCCCATTTTAATTGAAGAAATCAGTAAAAAATCCAGAGTAACCCAAATTCAAAACCTATTTTTCTCGAAACTGGTAGGTCCGCAGCGAAAACGGAAAACAGGTTCGGAAAGGGTGTGTTCTCAGCTTTCGAATGACAACCTTTCGCTTTCGAATCTCGACCCGAAATTCCAACCTAAGTTCACAACCTTCCCTAGTAAGGATTACTGCAGATTTTGGAGTTTCTTTAACTATAGTTATATGTTATACAGTAATCACGAATGTTTCAAAGAAAATACAGTCAGAATTCAAAAATCTACTGTAGTTCTTAAAAATGGAAATTTCCAAGAACTATGTAGATTACTGTAGWTTTTGAATTTTTTTTCAATTTACGAATTTTTATGATTACAGTGAGAATGAACAGTTGATTATTGTAGTATTTTTGTAGGTTTTCTAACAATTTTCCAACTTGATTATTGTAGTTCAGACTACTGTAGCTCTATAGTACAAAAACCTCCAATCGAAAAACCTACAATAATCCTTAAAAATGTAATCTCTCACTTGGGTGTAAAGCAACGGGTCAGAAATTGCGCCCCAGTAGTAAACGTGAGATTTTAGAAAAAAAAATCGCTTCTGAATTATCTGAGGGTTTTAAAAATTACGCGTTGCAACTCGTTGATTGGAGCGCGTTTTTGACCCGTTGCCTTGGACCCAAGTGAGAAAAATATTTTTATAGACAAAAAGTTTCAAGGTTCTTCGAAGATTGAGCTGTTTTCGCTGCTCAGCCAAGTTGTGGCTTCAGCCGACGATAATTTTTTCTATGTTTCGCAACTTACATCCACCGTAGCGGCCATCCAGTCAGCCGAAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTACTGCAGATTTTGGAGTTT</pcr_primer_p1>
		<pcr_primer_p2>CAAGTTGGAAAATTGTTAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTACTGCAGATTTTGGAGTTTCTTTAACTATAGTTATATGTTATACAGTAATCACGAATGTTTCAAAGAAAATACAGTCAGAATTCAAAAATCTACTGTAGTTCTTAAAAATGGAAATTTCCAAGAACTATGTAGATTACTGTAGATTTTGAATTTTTTTTCAATTTACGAATTTTTATGATTACAGTGAGAATGAACAGTTGATTATTGTAGTATTTTTGTAGGTTTTCTAACAATTTTCCAACTTG</canonical_amplicon>
		<polymorphic_amplicon>ATTACTGCAGATTTTGGAGTTTCTTTAACTATAGTTATATGTTATACAGTAATCACGAATGTTTCAAAGAAAATACAGTCAGAATTCAAAAATCTACTGTAGTTCTTAAAAATGGAAATTTCCAAGAACTATGTAGATTACTGTAGWTTTTGAATTTTTTTTCAATTTACGAATTTTTATGATTACAGTGAGAATGAACAGTTGATTATTGTAGTATTTTTGTAGGTTTTCTAACAATTTTCCAACTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31433</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>195024</contig_pos>
        <strand>+</strand>
        <context>TGACCCTCCC[C/T]TTCATTTCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATAAATTAGCTCAAACTTGACATTCCTAACATTGCAACTTGACCCTCCC</left_flank>
        <right_flank>TTCATTTCAGGGTATTTTATTCCCCCTACAAAAATAAAAAAACTTTCTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTAGGAGCCCCACCTCCTCCAGCAGGTCCTCCGCCAACTCCAAAGTAAGCCGATTGTGCTCCAGCATTGCCACCGCCAGCGACTCCGAAATAAGCAGATGTCATGGTCGATCGTTTGGTTCGAAGTATTCGAATGTGATTGAGGGTTTCGATTTCACCAGAATTTATAGCAAATTTTGGAGATCTTATCAGTTTAACCATGGCAGTGGGACAACATTACGTGTAAAAAATTACGCGTTTTTTTTGAATAATAATCTTTTTAGCTGTCTGTTGTTTCAAAACTTCTTGAAAATTGTGCTACTTTCAACTTTGAGCCAATTTTTCTCGGTTCCTGCCAAAGATTTTCTGGGTTGCCGAAGAAGAAAACTGTAAACTGATAAATTATTTTTCATTATATCAGAAACATTTTATCAGTTGACCCATTTTTTATATCTTCTACAGAAACTGAGATAAATTAGCTCAAACTTGACATTCCTAACATTGCAACTTGACCCTCCCTTTCATTTCAGGGTATTTTATTCCCCCTACAAAAATAAAAAAACTTTCTTTTTTATACAATCATTTTCATAACAAAGATCCCTGTATTTGCCCAACCCAACATTCTTTTTGTGACTGAAATATAGTATCTATTTTAGATAATCTTATCCTAAACATCAGAGAAAAGAAGAACATTCTCGAAATCTCGAAATCTTGACAACTTCTTAAAGGGCTGAAGAGTACCATTACATTCTCTCGAGGATTGGTATCTCATCTGAAGATTCTAGACGCGTGGTTTTCCTTTCTCAAAAAAGTACAAACGATAAGTGATTGCATCTTTTAAAGATGTCACCAAATACAAACTACGAAACTAGTTAGATTCCAAAAGTCGAATGATGTCACAGTGGGTTTTTCCACACATTTTTAGTGCCTTCATTTAATTTTTTTGATTATTCCCAAATTCTGGAACAAGCATAGATTGGCCTACATTCTTGATTATAATATCGTTTAAAGAACAGGCGC</canonical>
            <polymorphic>TTTTAGGAGCCCCACCTCCTCCAGCAGGTCCTCCGCCAACTCCAAAGTAAGCCGATTGTGCTCCAGCATTGCCACCGCCAGCGACTCCGAAATAAGCAGATGTCATGGTCGATCGTTTGGTTCGAAGTATTCGAATGTGATTGAGGGTTTCGATTTCACCAGAATTTATAGCAAATTTTGGAGATCTTATCAGTTTAACCATGGCAGTGGGACAACATTACGTGTAAAAAATTACGCGTTTTTTTTGAATAATAATCTTTTTAGCTGTCTGTTGTTTCAAAACTTCTTGAAAATTGTGCTACTTTCAACTTTGAGCCAATTTTTCTCGGTTCCTGCCAAAGATTTTCTGGGTTGCCGAAGAAGAAAACTGTAAACTGATAAATTATTTTTCATTATATCAGAAACATTTTATCAGTTGACCCATTTTTTATATCTTCTACAGAAACTGAGATAAATTAGCTCAAACTTGACATTCCTAACATTGCAACTTGACCCTCCCYTTCATTTCAGGGTATTTTATTCCCCCTACAAAAATAAAAAAACTTTCTTTTTTATACAATCATTTTCATAACAAAGATCCCTGTATTTGCCCAACCCAACATTCTTTTTGTGACTGAAATATAGTATCTATTTTAGATAATCTTATCCTAAACATCAGAGAAAAGAAGAACATTCTCGAAATCTCGAAATCTTGACAACTTCTTAAAGGGCTGAAGAGTACCATTACATTCTCTCGAGGATTGGTATCTCATCTGAAGATTCTAGACGCGTGGTTTTCCTTTCTCAAAAAAGTACAAACGATAAGTGATTGCATCTTTTAAAGATGTCACCAAATACAAACTACGAAACTAGTTAGATTCCAAAAGTCGAATGATGTCACAGTGGGTTTTTCCACACATTTTTAGTGCCTTCATTTAATTTTTTTGATTATTCCCAAATTCTGGAACAAGCATAGATTGGCCTACATTCTTGATTATAATATCGTTTAAAGAACAGGCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTTCTTGAAAATTGTGCT</pcr_primer_p1>
		<pcr_primer_p2>GATCTTTGTTATGAAAATGATTGTA</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>AAAACTTCTTGAAAATTGTGCTACTTTCAACTTTGAGCCAATTTTTCTCGGTTCCTGCCAAAGATTTTCTGGGTTGCCGAAGAAGAAAACTGTAAACTGATAAATTATTTTTCATTATATCAGAAACATTTTATCAGTTGACCCATTTTTTATATCTTCTACAGAAACTGAGATAAATTAGCTCAAACTTGACATTCCTAACATTGCAACTTGACCCTCCCTTTCATTTCAGGGTATTTTATTCCCCCTACAAAAATAAAAAAACTTTCTTTTTTATACAATCATTTTCATAACAAAGATC</canonical_amplicon>
		<polymorphic_amplicon>AAAACTTCTTGAAAATTGTGCTACTTTCAACTTTGAGCCAATTTTTCTCGGTTCCTGCCAAAGATTTTCTGGGTTGCCGAAGAAGAAAACTGTAAACTGATAAATTATTTTTCATTATATCAGAAACATTTTATCAGTTGACCCATTTTTTATATCTTCTACAGAAACTGAGATAAATTAGCTCAAACTTGACATTCCTAACATTGCAACTTGACCCTCCCYTTCATTTCAGGGTATTTTATTCCCCCTACAAAAATAAAAAAACTTTCTTTTTTATACAATCATTTTCATAACAAAGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31434</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>254965</contig_pos>
        <strand>+</strand>
        <context>TTTCCAAGAA[A/G]ATCCCAGCAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGACTTCGGCTGAAGGATCTACCAACTTGAAGGAGGTCCTTTCCAAGAA</left_flank>
        <right_flank>ATCCCAGCACACAACGCCAAAGTGAAGTCGTTCCGTGCTGAGCATGGCAA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTTCCATCAATTTAGAAAGTCCCACGAATGCGTAATCTATCTCGCTGACCTCCAACGTAACTCATTGCCACTTCTTTCCTGTGACGCGTGAGAGTGAGGTTTAGAGAAGGAGGGGGCAAAGTGTGCGGCTGCGCGCCGCCCGTCCTCATTTTTGAACGAGAGTGCTGTGTGAGAGATTGTTTCACCATCAGATGTCTCAGTGTTTCATCCAAGTTTACTATCATTTTTATCGTCATTTGGCGGTCAAGCGATAAATTAATAGATGATTTGCTGTTTAACACGTGTTCCTGATAGATTTCTGCAGAAAAAAAATACTAGCTCGCTTGCGAGAATTCAAATATTTTGGTTTACAGGTTTAATCCGACCAGAAAATGCCAATCACCGGAACAGTACTTCGTAGATTCATCACAAAGGGAGTTATCCCAATGTGCCAAGTCGCTCCACTTTCGACTTCGGCTGAAGGATCTACCAACTTGAAGGAGGTCCTTTCCAAGAAAATCCCAGCACACAACGCCAAAGTGAAGTCGTTCCGTGCTGAGCATGGCAACACCGTTGTTCAAAGTGTCAACATTGACATGGTAATTTTTGCCACTCGCAATTCCCAAAAAATGTTTGCATATAATTTGCATAATTTTTACCTTATAGATTTACGGAGGAATGAGAAGCATGAAGGGAATGGTTACCGAAACCTCAGTTCTTGACCCAGAAGAAGGAATCAGATTCCGTGGATACTCTATCCCAGAGTGCCAAAAGCTTCTTCCAAAGGCAAAGGGAGGAGAAGAGCCACTTCCAGAAGCTATTTGGTGGCTCCTCTGTACAGGAGACGTTCCAAGTGAGGCTCAGACCGCTGCTATCACCAAGGAATGGAACGCCCGCGCTGACCTTCCAACCCATGTTGTGCGCATGCTTGACAACTTCCCAGATAATCTCCATCCTATGGCCCAATTCATCGCCGCAATTGCTGCTTTGAACAACGAGAGCAAATTTGCCGGAGCTT</canonical>
            <polymorphic>GTTTTTCCATCAATTTAGAAAGTCCCACGAATGCGTAATCTATCTCGCTGACCTCCAACGTAACTCATTGCCACTTCTTTCCTGTGACGCGTGAGAGTGAGGTTTAGAGAAGGAGGGGGCAAAGTGTGCGGCTGCGCGCCGCCCGTCCTCATTTTTGAACGAGAGTGCTGTGTGAGAGATTGTTTCACCATCAGATGTCTCAGTGTTTCATCCAAGTTTACTATCATTTTTATCGTCATTTGGCGGTCAAGCGATAAATTAATAGATGATTTGCTGTTTAACACGTGTTCCTGATAGATTTCTGCAGAAAAAAAATACTAGCTCGCTTGCGAGAATTCAAATATTTTGGTTTACAGGTTTAATCCGACCAGAAAATGCCAATCACCGGAACAGTACTTCGTAGATTCATCACAAAGGGAGTTATCCCAATGTGCCAAGTCGCTCCACTTTCGACTTCGGCTGAAGGATCTACCAACTTGAAGGAGGTCCTTTCCAAGAARATCCCAGCACACAACGCCAAAGTGAAGTCGTTCCGTGCTGAGCATGGCAACACCGTTGTTCAAAGTGTCAACATTGACATGGTAATTTTTGCCACTCGCAATTCCCAAAAAATGTTTGCATATAATTTGCATAATTTTTACCTTATAGATTTACGGAGGAATGAGAAGCATGAAGGGAATGGTTACCGAAACCTCAGTTCTTGACCCAGAAGAAGGAATCAGATTCCGTGGATACTCTATCCCAGAGTGCCAAAAGCTTCTTCCAAAGGCAAAGGGAGGAGAAGAGCCACTTCCAGAAGCTATTTGGTGGCTCCTCTGTACAGGAGACGTTCCAAGTGAGGCTCAGACCGCTGCTATCACCAAGGAATGGAACGCCCGCGCTGACCTTCCAACCCATGTTGTGCGCATGCTTGACAACTTCCCAGATAATCTCCATCCTATGGCCCAATTCATCGCCGCAATTGCTGCTTTGAACAACGAGAGCAAATTTGCCGGAGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAAATATTTTGGTTTACAGGT</pcr_primer_p1>
		<pcr_primer_p2>CAATGTTGACACTTTGAACAAC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTCAAATATTTTGGTTTACAGGTTTAATCCGACCAGAAAATGCCAATCACCGGAACAGTACTTCGTAGATTCATCACAAAGGGAGTTATCCCAATGTGCCAAGTCGCTCCACTTTCGACTTCGGCTGAAGGATCTACCAACTTGAAGGAGGTCCTTTCCAAGAAAATCCCAGCACACAACGCCAAAGTGAAGTCGTTCCGTGCTGAGCATGGCAACACCGTTGTTCAAAGTGTCAACATTG</canonical_amplicon>
		<polymorphic_amplicon>TTCAAATATTTTGGTTTACAGGTTTAATCCGACCAGAAAATGCCAATCACCGGAACAGTACTTCGTAGATTCATCACAAAGGGAGTTATCCCAATGTGCCAAGTCGCTCCACTTTCGACTTCGGCTGAAGGATCTACCAACTTGAAGGAGGTCCTTTCCAAGAARATCCCAGCACACAACGCCAAAGTGAAGTCGTTCCGTGCTGAGCATGGCAACACCGTTGTTCAAAGTGTCAACATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31435</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>279103</contig_pos>
        <strand>+</strand>
        <context>ATCCAAAAGA[G/T]CCATAACAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTGGCTTTTGGAGGCGAGAGTGGTGCTGGACAGGTGGATAATCCAAAAGA</left_flank>
        <right_flank>CCATAACAAATAATTTGTAAAAGTGAGATTAAATTACAGTATTCTAATCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTCTCTTTTCTTCAGCAGCCACTTTTAGTGTGAAGGGTAGAGAGACATAAAGACATAGACAACTCCGTGGTCTTCTTCTTTTTTTTGCTCCTATACACACTCTTCTCCTGCGATGCAAAGGGATGGGGGTCTACACGAGAAAGCAGAAGCCGAGTAGAAGAAAAAAAGAAGACGTAGAATAAGAGGAAGAAGAAAAGAGCTCTGGCCACACAAACAAATGGATGTCGTCTCTTTCTCTCGGGCGGCGTTGACTCCGAGAGCACCGAAGGGGAAATTGAGGGAAAAAAGTTAATGCACTTGACAATAATACTACGACATAATACAATTCCTGTGTCGTTTTTTGGTTCACCTTTTGTGCGCCAGATGGGCGGTGCGGAACTAGAATGTGGGCAATTTTGGGTAGTTCGGAAGAGATAATGGATCATAAAAGACATGGAGGTAGTTACTCTGGCTTTTGGAGGCGAGAGTGGTGCTGGACAGGTGGATAATCCAAAAGAGCCATAACAAATAATTTGTAAAAGTGAGATTAAATTACAGTATTCTAATCGTTTTGAAAACAAGGGATTCGGAGAACAGTAACTCAAAAGCTCGAAATATGATTCTTCAACTTTTCAAAGTTTTCTTTGATATACACAGGTAGAGGGGCATTAAACTGCTAAATGACAGCCAAAGAGGAGCAAAATGGCGAATGACTGCTAGTTGGAAGCCGAAGGAGGACCGATAGACTGTCAACGGACTGTGGACGGACAACCGGAACCTCTTGGAAAACCGACTTGAAAGTTTTGATTGAAAATCATCCAGAAAAGATTATGTTATGCTTCCACTAGATTATTCTGATGATAGAAACTACTTTTTCTCACATAAGACAACCTCAAAAAGTATATTGTTGAACGACGGCTTGGTGACAGTCGAAAGGCACTGACTAGTCGATTACCGGTGGTTGGTGGACCAAATTTCTGGAGAATGGAACATTTTGTCAAAAATTACTTTTGGAATTA</canonical>
            <polymorphic>CTCTCTCTTTTCTTCAGCAGCCACTTTTAGTGTGAAGGGTAGAGAGACATAAAGACATAGACAACTCCGTGGTCTTCTTCTTTTTTTTGCTCCTATACACACTCTTCTCCTGCGATGCAAAGGGATGGGGGTCTACACGAGAAAGCAGAAGCCGAGTAGAAGAAAAAAAGAAGACGTAGAATAAGAGGAAGAAGAAAAGAGCTCTGGCCACACAAACAAATGGATGTCGTCTCTTTCTCTCGGGCGGCGTTGACTCCGAGAGCACCGAAGGGGAAATTGAGGGAAAAAAGTTAATGCACTTGACAATAATACTACGACATAATACAATTCCTGTGTCGTTTTTTGGTTCACCTTTTGTGCGCCAGATGGGCGGTGCGGAACTAGAATGTGGGCAATTTTGGGTAGTTCGGAAGAGATAATGGATCATAAAAGACATGGAGGTAGTTACTCTGGCTTTTGGAGGCGAGAGTGGTGCTGGACAGGTGGATAATCCAAAAGAKCCATAACAAATAATTTGTAAAAGTGAGATTAAATTACAGTATTCTAATCGTTTTGAAAACAAGGGATTCGGAGAACAGTAACTCAAAAGCTCGAAATATGATTCTTCAACTTTTCAAAGTTTTCTTTGATATACACAGGTAGAGGGGCATTAAACTGCTAAATGACAGCCAAAGAGGAGCAAAATGGCGAATGACTGCTAGTTGGAAGCCGAAGGAGGACCGATAGACTGTCAACGGACTGTGGACGGACAACCGGAACCTCTTGGAAAACCGACTTGAAAGTTTTGATTGAAAATCATCCAGAAAAGATTATGTTATGCTTCCACTAGATTATTCTGATGATAGAAACTACTTTTTCTCACATAAGACAACCTCAAAAAGTATATTGTTGAACGACGGCTTGGTGACAGTCGAAAGGCACTGACTAGTCGATTACCGGTGGTTGGTGGACCAAATTTCTGGAGAATGGAACATTTTGTCAAAAATTACTTTTGGAATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>246 191 131 101 89 79 50 47 40 20 6</canonical_bands>
                <polymorphic_bands>246 191 136 131 101 79 50 40 20 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGACATAATACAATTCCTGTGT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAAAACGATTAGAATACTGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACGACATAATACAATTCCTGTGTCGTTTTTTGGTTCACCTTTTGTGCGCCAGATGGGCGGTGCGGAACTAGAATGTGGGCAATTTTGGGTAGTTCGGAAGAGATAATGGATCATAAAAGACATGGAGGTAGTTACTCTGGCTTTTGGAGGCGAGAGTGGTGCTGGACAGGTGGATAATCCAAAAGAGCCATAACAAATAATTTGTAAAAGTGAGATTAAATTACAGTATTCTAATCGTTTTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACGACATAATACAATTCCTGTGTCGTTTTTTGGTTCACCTTTTGTGCGCCAGATGGGCGGTGCGGAACTAGAATGTGGGCAATTTTGGGTAGTTCGGAAGAGATAATGGATCATAAAAGACATGGAGGTAGTTACTCTGGCTTTTGGAGGCGAGAGTGGTGCTGGACAGGTGGATAATCCAAAAGAKCCATAACAAATAATTTGTAAAAGTGAGATTAAATTACAGTATTCTAATCGTTTTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31436</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>279234</contig_pos>
        <strand>+</strand>
        <context>TTTCTTTGAT[A/T]TACACAGGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTCAAAAGCTCGAAATATGATTCTTCAACTTTTCAAAGTTTTCTTTGAT</left_flank>
        <right_flank>TACACAGGTAGAGGGGCATTAAACTGCTAAATGACAGCCAAAGAGGAGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTACACGAGAAAGCAGAAGCCGAGTAGAAGAAAAAAAGAAGACGTAGAATAAGAGGAAGAAGAAAAGAGCTCTGGCCACACAAACAAATGGATGTCGTCTCTTTCTCTCGGGCGGCGTTGACTCCGAGAGCACCGAAGGGGAAATTGAGGGAAAAAAGTTAATGCACTTGACAATAATACTACGACATAATACAATTCCTGTGTCGTTTTTTGGTTCACCTTTTGTGCGCCAGATGGGCGGTGCGGAACTAGAATGTGGGCAATTTTGGGTAGTTCGGAAGAGATAATGGATCATAAAAGACATGGAGGTAGTTACTCTGGCTTTTGGAGGCGAGAGTGGTGCTGGACAGGTGGATAATCCAAAAGAGCCATAACAAATAATTTGTAAAAGTGAGATTAAATTACAGTATTCTAATCGTTTTGAAAACAAGGGATTCGGAGAACAGTAACTCAAAAGCTCGAAATATGATTCTTCAACTTTTCAAAGTTTTCTTTGATATACACAGGTAGAGGGGCATTAAACTGCTAAATGACAGCCAAAGAGGAGCAAAATGGCGAATGACTGCTAGTTGGAAGCCGAAGGAGGACCGATAGACTGTCAACGGACTGTGGACGGACAACCGGAACCTCTTGGAAAACCGACTTGAAAGTTTTGATTGAAAATCATCCAGAAAAGATTATGTTATGCTTCCACTAGATTATTCTGATGATAGAAACTACTTTTTCTCACATAAGACAACCTCAAAAAGTATATTGTTGAACGACGGCTTGGTGACAGTCGAAAGGCACTGACTAGTCGATTACCGGTGGTTGGTGGACCAAATTTCTGGAGAATGGAACATTTTGTCAAAAATTACTTTTGGAATTATCACACTATAAAAGTCAAAGAGGACTCTGGGAATCTTCAAAATTTATTATTAGAAGTATGCGGACAAAAATGACCCATTTATATTCAGAAGAAATCTCGAAAACGTTTTTTTTTTGAAAACCAAGAGAAGA</canonical>
            <polymorphic>TCTACACGAGAAAGCAGAAGCCGAGTAGAAGAAAAAAAGAAGACGTAGAATAAGAGGAAGAAGAAAAGAGCTCTGGCCACACAAACAAATGGATGTCGTCTCTTTCTCTCGGGCGGCGTTGACTCCGAGAGCACCGAAGGGGAAATTGAGGGAAAAAAGTTAATGCACTTGACAATAATACTACGACATAATACAATTCCTGTGTCGTTTTTTGGTTCACCTTTTGTGCGCCAGATGGGCGGTGCGGAACTAGAATGTGGGCAATTTTGGGTAGTTCGGAAGAGATAATGGATCATAAAAGACATGGAGGTAGTTACTCTGGCTTTTGGAGGCGAGAGTGGTGCTGGACAGGTGGATAATCCAAAAGAGCCATAACAAATAATTTGTAAAAGTGAGATTAAATTACAGTATTCTAATCGTTTTGAAAACAAGGGATTCGGAGAACAGTAACTCAAAAGCTCGAAATATGATTCTTCAACTTTTCAAAGTTTTCTTTGATWTACACAGGTAGAGGGGCATTAAACTGCTAAATGACAGCCAAAGAGGAGCAAAATGGCGAATGACTGCTAGTTGGAAGCCGAAGGAGGACCGATAGACTGTCAACGGACTGTGGACGGACAACCGGAACCTCTTGGAAAACCGACTTGAAAGTTTTGATTGAAAATCATCCAGAAAAGATTATGTTATGCTTCCACTAGATTATTCTGATGATAGAAACTACTTTTTCTCACATAAGACAACCTCAAAAAGTATATTGTTGAACGACGGCTTGGTGACAGTCGAAAGGCACTGACTAGTCGATTACCGGTGGTTGGTGGACCAAATTTCTGGAGAATGGAACATTTTGTCAAAAATTACTTTTGGAATTATCACACTATAAAAGTCAAAGAGGACTCTGGGAATCTTCAAAATTTATTATTAGAAGTATGCGGACAAAAATGACCCATTTATATTCAGAAGAAATCTCGAAAACGTTTTTTTTTTGAAAACCAAGAGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTAACTCAAAAGCTCGAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGGAAGCATAACATAATCTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGTAACTCAAAAGCTCGAAATATGATTCTTCAACTTTTCAAAGTTTTCTTTGATATACACAGGTAGAGGGGCATTAAACTGCTAAATGACAGCCAAAGAGGAGCAAAATGGCGAATGACTGCTAGTTGGAAGCCGAAGGAGGACCGATAGACTGTCAACGGACTGTGGACGGACAACCGGAACCTCTTGGAAAACCGACTTGAAAGTTTTGATTGAAAATCATCCAGAAAAGATTATGTTATGCTTCCA</canonical_amplicon>
		<polymorphic_amplicon>CAGTAACTCAAAAGCTCGAAATATGATTCTTCAACTTTTCAAAGTTTTCTTTGATWTACACAGGTAGAGGGGCATTAAACTGCTAAATGACAGCCAAAGAGGAGCAAAATGGCGAATGACTGCTAGTTGGAAGCCGAAGGAGGACCGATAGACTGTCAACGGACTGTGGACGGACAACCGGAACCTCTTGGAAAACCGACTTGAAAGTTTTGATTGAAAATCATCCAGAAAAGATTATGTTATGCTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31437</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>287285</contig_pos>
        <strand>+</strand>
        <context>TAACACAAAC[C/T]CTTCCCTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACGTTCAATTGAAATTTTAAACACCTCAAACTCACTTCTAACACAAAC</left_flank>
        <right_flank>CTTCCCTTCTGGCTGCCTGGAGACTGATCAACGTATCCTTGAATACAGAC</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGTGTATCCATCTCTACATTTACAAGTGTATTTCTCTGGATCATTTACTTCACTACAAATAGCAGCAGCATGACAATCATTCTGCTCTGGATCCAAACAAATCGGCTCGGTGAGAACACAGAGTCTTCCTGGTTTGGCGAGTGGGCTTGGAGAACGATCAGCATATCCAGCAAGACATTCACAAGTGTAGCTTTGAGCGCCAGTATCACGGCATGTTCCAGCTGGATGACAGTCGTTTCTTTCTGGGTCTTGACATGGATGACGTGGTGGTGGAGATGGAGGGGGTGGTGGTTCACAAACTCTTCCACGTTGAGAAGAATCTGGTGATCGATCTATGAACCCACGTTTGCATTCACAACGATATCCTCTTGGCTCATCATAGCAAATTGCGTTTCGAGAGCATGTGTTGAGACGAGGATCGTGACAAGCGTTATCTGAAAATGTTGAAAACGTTCAATTGAAATTTTAAACACCTCAAACTCACTTCTAACACAAACCCTTCCCTTCTGGCTGCCTGGAGACTGATCAACGTATCCTTGAATACAGACGCACTGATATTTCATTCCTCCAAGTGGTTCACAAACAGCAGCCGATGAGCAATCATGATCTGGTGGGCAGACTTCTGGTGCAGAACAGACACGTCCTGGTTGGCTGGCAAGATTTGGAGACCGATCCACGTATCCATCACGGCATTCACAAGTGTATCCTTCTTCAAGATCACGGCAATCGGCATGGTTACTGCAGGTATGACGTCCTTCACGACATTCATCCACCAGTTTGACACAAACTCTTCCTGGGCGGGCAAGCTTGTTTGGTGAACGATCGACGAATCCGTTGGGGCATTCGCAAGTGAATGATTGCTCATTGTCACGGCAAGTAGCAGATGGATCACAGTCGTGAACTCCCGTTTCGCATTCATTGATGACTGAAATTCAGAAAATTAAAACTTGAGTAAAGATAAGGTTACTTACACATAAGGCATACTCTTCCTGGGAACG</canonical>
            <polymorphic>TCAGTGTATCCATCTCTACATTTACAAGTGTATTTCTCTGGATCATTTACTTCACTACAAATAGCAGCAGCATGACAATCATTCTGCTCTGGATCCAAACAAATCGGCTCGGTGAGAACACAGAGTCTTCCTGGTTTGGCGAGTGGGCTTGGAGAACGATCAGCATATCCAGCAAGACATTCACAAGTGTAGCTTTGAGCGCCAGTATCACGGCATGTTCCAGCTGGATGACAGTCGTTTCTTTCTGGGTCTTGACATGGATGACGTGGTGGTGGAGATGGAGGGGGTGGTGGTTCACAAACTCTTCCACGTTGAGAAGAATCTGGTGATCGATCTATGAACCCACGTTTGCATTCACAACGATATCCTCTTGGCTCATCATAGCAAATTGCGTTTCGAGAGCATGTGTTGAGACGAGGATCGTGACAAGCGTTATCTGAAAATGTTGAAAACGTTCAATTGAAATTTTAAACACCTCAAACTCACTTCTAACACAAACYCTTCCCTTCTGGCTGCCTGGAGACTGATCAACGTATCCTTGAATACAGACGCACTGATATTTCATTCCTCCAAGTGGTTCACAAACAGCAGCCGATGAGCAATCATGATCTGGTGGGCAGACTTCTGGTGCAGAACAGACACGTCCTGGTTGGCTGGCAAGATTTGGAGACCGATCCACGTATCCATCACGGCATTCACAAGTGTATCCTTCTTCAAGATCACGGCAATCGGCATGGTTACTGCAGGTATGACGTCCTTCACGACATTCATCCACCAGTTTGACACAAACTCTTCCTGGGCGGGCAAGCTTGTTTGGTGAACGATCGACGAATCCGTTGGGGCATTCGCAAGTGAATGATTGCTCATTGTCACGGCAAGTAGCAGATGGATCACAGTCGTGAACTCCCGTTTCGCATTCATTGATGACTGAAATTCAGAAAATTAAAACTTGAGTAAAGATAAGGTTACTTACACATAAGGCATACTCTTCCTGGGAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTGAGAAGAATCTGGTGA</pcr_primer_p1>
		<pcr_primer_p2>TATCAGTGCGTCTGTATTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTTGAGAAGAATCTGGTGATCGATCTATGAACCCACGTTTGCATTCACAACGATATCCTCTTGGCTCATCATAGCAAATTGCGTTTCGAGAGCATGTGTTGAGACGAGGATCGTGACAAGCGTTATCTGAAAATGTTGAAAACGTTCAATTGAAATTTTAAACACCTCAAACTCACTTCTAACACAAACCCTTCCCTTCTGGCTGCCTGGAGACTGATCAACGTATCCTTGAATACAGACGCACTGATA</canonical_amplicon>
		<polymorphic_amplicon>CGTTGAGAAGAATCTGGTGATCGATCTATGAACCCACGTTTGCATTCACAACGATATCCTCTTGGCTCATCATAGCAAATTGCGTTTCGAGAGCATGTGTTGAGACGAGGATCGTGACAAGCGTTATCTGAAAATGTTGAAAACGTTCAATTGAAATTTTAAACACCTCAAACTCACTTCTAACACAAACYCTTCCCTTCTGGCTGCCTGGAGACTGATCAACGTATCCTTGAATACAGACGCACTGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31438</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>293230</contig_pos>
        <strand>+</strand>
        <context>TATTTGAATT[G/T]GTACAGTGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCTCATCACAAGTGTTCAGTGATTTCTCCGAACATTCGTTATTTGAATT</left_flank>
        <right_flank>GTACAGTGTCTTCCAGGTGGTTTGTTGTATCTGCTACTGACGTCAATGAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCATTCTGTTGCGGTCTGGCCCCTCGTCTCTCACTGAATCCTTCCTGAACCATATGCTGAATCGCAGCTCCAGTTCTAGTCAACCCAGTAAGATATTGTGTTTCAGAAATGCCCTTTAGAAGTGAACTTCTATCTCCATACTGATCCAAATCAAATTCGTGACGAATTTGATCTGAGTACTGGATTAACCCAACCCTAGTCTTGCCTCTTCCAATTTCAAAAAGCTCCACAAATTCGCGAACAAATCGGAGTACCTCGTTTTTGAATACGTAAGATCCAATGGATCCAGATCCATCAATCAAGAAAACGAGATCAGTCTTCTGTTTTGGACATGTTGTTTGTACTGTGCAGACACGTCCAGGTGGCAGATTAGCATTTGAAGAGACATCAACGAATCCACCGTAACATTGACACGTGTATCCATCTGGAGTATCGACGCAGTCGGCGTTCTCATCACAAGTGTTCAGTGATTTCTCCGAACATTCGTTATTTGAATTGGTACAGTGTCTTCCAGGTGGTTTGTTGTATCTGCTACTGACGTCAATGAATCCATCAAGGCATTGACAAGCGTATCTAAAAAAGAAAAAGAATTGGTCAGTCGGAAGTTAAAAGGCTTTTTACCCATTAGTGGCATCAATGCATCTGGCATACGGTGAACATTCATTATCGGATGACGCGCATTCATTGATCACTGGATTAAAATGAGATGAAATGGAATGAGATTAGCGGTTTTGAGACTTACGTTCTTTACAGATTCTTCCAGGTGCATTAGCAAGATCCGCAGACAAATCAATGAATCCCGGACGGCATTGGCAAGTGTAAGAATCAAATCGGTTCAAGCAAATGGCATTTTTATCACATGAATTGATTTTCGAACAGGCAGAATAGACTAAAAAAGAAGAGCTAGAAGAGTTCTCTGAACACTTTTTTACCTCTACAACTTCCATCGGTGTATCTGAAAGCAGTCTCAATGCATTCGCAAGTGTGTTGACCGTGAC</canonical>
            <polymorphic>TATCATTCTGTTGCGGTCTGGCCCCTCGTCTCTCACTGAATCCTTCCTGAACCATATGCTGAATCGCAGCTCCAGTTCTAGTCAACCCAGTAAGATATTGTGTTTCAGAAATGCCCTTTAGAAGTGAACTTCTATCTCCATACTGATCCAAATCAAATTCGTGACGAATTTGATCTGAGTACTGGATTAACCCAACCCTAGTCTTGCCTCTTCCAATTTCAAAAAGCTCCACAAATTCGCGAACAAATCGGAGTACCTCGTTTTTGAATACGTAAGATCCAATGGATCCAGATCCATCAATCAAGAAAACGAGATCAGTCTTCTGTTTTGGACATGTTGTTTGTACTGTGCAGACACGTCCAGGTGGCAGATTAGCATTTGAAGAGACATCAACGAATCCACCGTAACATTGACACGTGTATCCATCTGGAGTATCGACGCAGTCGGCGTTCTCATCACAAGTGTTCAGTGATTTCTCCGAACATTCGTTATTTGAATTKGTACAGTGTCTTCCAGGTGGTTTGTTGTATCTGCTACTGACGTCAATGAATCCATCAAGGCATTGACAAGCGTATCTAAAAAAGAAAAAGAATTGGTCAGTCGGAAGTTAAAAGGCTTTTTACCCATTAGTGGCATCAATGCATCTGGCATACGGTGAACATTCATTATCGGATGACGCGCATTCATTGATCACTGGATTAAAATGAGATGAAATGGAATGAGATTAGCGGTTTTGAGACTTACGTTCTTTACAGATTCTTCCAGGTGCATTAGCAAGATCCGCAGACAAATCAATGAATCCCGGACGGCATTGGCAAGTGTAAGAATCAAATCGGTTCAAGCAAATGGCATTTTTATCACATGAATTGATTTTCGAACAGGCAGAATAGACTAAAAAAGAAGAGCTAGAAGAGTTCTCTGAACACTTTTTTACCTCTACAACTTCCATCGGTGTATCTGAAAGCAGTCTCAATGCATTCGCAAGTGTGTTGACCGTGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGATTAGCATTTGAAGAGACAT</pcr_primer_p1>
		<pcr_primer_p2>ACTGACCAATTCTTTTTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>CAGATTAGCATTTGAAGAGACATCAACGAATCCACCGTAACATTGACACGTGTATCCATCTGGAGTATCGACGCAGTCGGCGTTCTCATCACAAGTGTTCAGTGATTTCTCCGAACATTCGTTATTTGAATTGGTACAGTGTCTTCCAGGTGGTTTGTTGTATCTGCTACTGACGTCAATGAATCCATCAAGGCATTGACAAGCGTATCTAAAAAAGAAAAAGAATTGGTCAGT</canonical_amplicon>
		<polymorphic_amplicon>CAGATTAGCATTTGAAGAGACATCAACGAATCCACCGTAACATTGACACGTGTATCCATCTGGAGTATCGACGCAGTCGGCGTTCTCATCACAAGTGTTCAGTGATTTCTCCGAACATTCGTTATTTGAATTKGTACAGTGTCTTCCAGGTGGTTTGTTGTATCTGCTACTGACGTCAATGAATCCATCAAGGCATTGACAAGCGTATCTAAAAAAGAAAAAGAATTGGTCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31439</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>293533</contig_pos>
        <strand>+</strand>
        <context>CAATGAATCC[C/T]GGACGGCATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGATTCTTCCAGGTGCATTAGCAAGATCCGCAGACAAATCAATGAATCC</left_flank>
        <right_flank>GGACGGCATTGGCAAGTGTAAGAATCAAATCGGTTCAAGCAAATGGCATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAAACGAGATCAGTCTTCTGTTTTGGACATGTTGTTTGTACTGTGCAGACACGTCCAGGTGGCAGATTAGCATTTGAAGAGACATCAACGAATCCACCGTAACATTGACACGTGTATCCATCTGGAGTATCGACGCAGTCGGCGTTCTCATCACAAGTGTTCAGTGATTTCTCCGAACATTCGTTATTTGAATTGGTACAGTGTCTTCCAGGTGGTTTGTTGTATCTGCTACTGACGTCAATGAATCCATCAAGGCATTGACAAGCGTATCTAAAAAAGAAAAAGAATTGGTCAGTCGGAAGTTAAAAGGCTTTTTACCCATTAGTGGCATCAATGCATCTGGCATACGGTGAACATTCATTATCGGATGACGCGCATTCATTGATCACTGGATTAAAATGAGATGAAATGGAATGAGATTAGCGGTTTTGAGACTTACGTTCTTTACAGATTCTTCCAGGTGCATTAGCAAGATCCGCAGACAAATCAATGAATCCCGGACGGCATTGGCAAGTGTAAGAATCAAATCGGTTCAAGCAAATGGCATTTTTATCACATGAATTGATTTTCGAACAGGCAGAATAGACTAAAAAAGAAGAGCTAGAAGAGTTCTCTGAACACTTTTTTACCTCTACAACTTCCATCGGTGTATCTGAAAGCAGTCTCAATGCATTCGCAAGTGTGTTGACCGTGACGACTGATACAAGCTTCATTAGCTCCACACTTTGGATGCTGAAGAGTCACTGGTTAGAGTTATACCGCTTCCAATAAATTATATTTACCTTTGGATCACACCCGTCATCAGTCGAAAATGAAGTATCCTTCAAGTCTGTCTTGATTTGTTCAACTGGTTTTGTACAAATTCTTCCCGGATGACGAGCAGCATTTGGAGAGTTATCAACGTATCCTGGACGACAAGAACAGATGTATCCTTCTTTTGCATCTTCACAGAATGCGTTCTTGGAACAATCATTCAGAGATGGAGACGCGCATTCATT</canonical>
            <polymorphic>AGAAAACGAGATCAGTCTTCTGTTTTGGACATGTTGTTTGTACTGTGCAGACACGTCCAGGTGGCAGATTAGCATTTGAAGAGACATCAACGAATCCACCGTAACATTGACACGTGTATCCATCTGGAGTATCGACGCAGTCGGCGTTCTCATCACAAGTGTTCAGTGATTTCTCCGAACATTCGTTATTTGAATTGGTACAGTGTCTTCCAGGTGGTTTGTTGTATCTGCTACTGACGTCAATGAATCCATCAAGGCATTGACAAGCGTATCTAAAAAAGAAAAAGAATTGGTCAGTCGGAAGTTAAAAGGCTTTTTACCCATTAGTGGCATCAATGCATCTGGCATACGGTGAACATTCATTATCGGATGACGCGCATTCATTGATCACTGGATTAAAATGAGATGAAATGGAATGAGATTAGCGGTTTTGAGACTTACGTTCTTTACAGATTCTTCCAGGTGCATTAGCAAGATCCGCAGACAAATCAATGAATCCYGGACGGCATTGGCAAGTGTAAGAATCAAATCGGTTCAAGCAAATGGCATTTTTATCACATGAATTGATTTTCGAACAGGCAGAATAGACTAAAAAAGAAGAGCTAGAAGAGTTCTCTGAACACTTTTTTACCTCTACAACTTCCATCGGTGTATCTGAAAGCAGTCTCAATGCATTCGCAAGTGTGTTGACCGTGACGACTGATACAAGCTTCATTAGCTCCACACTTTGGATGCTGAAGAGTCACTGGTTAGAGTTATACCGCTTCCAATAAATTATATTTACCTTTGGATCACACCCGTCATCAGTCGAAAATGAAGTATCCTTCAAGTCTGTCTTGATTTGTTCAACTGGTTTTGTACAAATTCTTCCCGGATGACGAGCAGCATTTGGAGAGTTATCAACGTATCCTGGACGACAAGAACAGATGTATCCTTCTTTTGCATCTTCACAGAATGCGTTCTTGGAACAATCATTCAGAGATGGAGACGCGCATTCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>499 372 129</canonical_bands>
                <polymorphic_bands>871 129</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 372 129</canonical_bands>
                <polymorphic_bands>871 129</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTTGAGACTTACGTTCTTTA</pcr_primer_p1>
		<pcr_primer_p2>ATTGAGACTGCTTTCAGATACAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GGTTTTGAGACTTACGTTCTTTACAGATTCTTCCAGGTGCATTAGCAAGATCCGCAGACAAATCAATGAATCCCGGACGGCATTGGCAAGTGTAAGAATCAAATCGGTTCAAGCAAATGGCATTTTTATCACATGAATTGATTTTCGAACAGGCAGAATAGACTAAAAAAGAAGAGCTAGAAGAGTTCTCTGAACACTTTTTTACCTCTACAACTTCCATCGGTGTATCTGAAAGCAGTCTCAAT</canonical_amplicon>
		<polymorphic_amplicon>GGTTTTGAGACTTACGTTCTTTACAGATTCTTCCAGGTGCATTAGCAAGATCCGCAGACAAATCAATGAATCCYGGACGGCATTGGCAAGTGTAAGAATCAAATCGGTTCAAGCAAATGGCATTTTTATCACATGAATTGATTTTCGAACAGGCAGAATAGACTAAAAAAGAAGAGCTAGAAGAGTTCTCTGAACACTTTTTTACCTCTACAACTTCCATCGGTGTATCTGAAAGCAGTCTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31440</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>308308</contig_pos>
        <strand>+</strand>
        <context>AAAAATAACA[C/T]TGTTCCAGCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATGGAAGGATAGAATATGGTGATTGGTATGAAGAGTTTCAAAAATAACA</left_flank>
        <right_flank>TGTTCCAGCCTGCATTGTTATGCGGGTGTTGTGAAAAAAATTAATCTCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCATATTATCAAAAATATTTTCTCAGTTGACCAATTTTTGAAATCTTTGGCTGAAACCGAATATATAGGCTCAAAGTTGGAAGTGAGGTTTCACGATGAACACAAATTCGTTCGGAAACTTGATAGTGTAAGCCTAACTTTTTTAATTCAGAAAACAACAGCTGTTAAAGTTTCAGAAAAAATGCTTCAAAGACTTCAGATTCACCCATTTTTCTGTTCCAAAAGAGAGCTTGGTATGACCCATAGAATTTCATTTTTTAGGAATTTTATAGCCATGCATTCCAGGTTTTAATTGAAAAAAATTTAAAAACTCACCTTCATCACTTCCATCATAGCAATCATCCACACCATCTTGCCATTTCTTCATAGAAATACACGATCTATCAATTTTACATTGAAATTCCTGTCGAGCAACACAAATTTGTGTAGTAGTAGAGTTCGAACAATATATGGAAGGATAGAATATGGTGATTGGTATGAAGAGTTTCAAAAATAACATTGTTCCAGCCTGCATTGTTATGCGGGTGTTGTGAAAAAAATTAATCTCATCTATCTCTCGAAGTAGTATATAGTTATGCCGGTCTGTGTGAAGGCTGGCAGCAAGTCCGCAAAAGACAACCAGTCTCCCCCGGTAGGGGGGCGGAGTTCCCCGGTACGGAAAAGAAAAAGAAGAAGAAGAAGAAAGGGAACAGAGAAGGGCACTGTGCGCGGAAGGAGAAGAAAATGATGAAGACGTGAAGAAGGTGAAGGAGGGAATTGGTTTAGGTATGTAGTATATCCCATACGTCTTCCGTAAAATGACGAAGAACACCACTCTTCAATCATTATGTTGTTCTTGTTAGGTTATTCTTTTGTTTTGTTCACCAATTATTATGAAAAATGAATATTCGGTGATGCATTAATCATATTCAGCAGAGTTGGGTTTGAATTTACAAAACCTGTAATAAAAGGGCTCCTTCACTTTTAACTTTGAGCCAATTTATTTTGGTTCCTGTCAAA</canonical>
            <polymorphic>AGCATATTATCAAAAATATTTTCTCAGTTGACCAATTTTTGAAATCTTTGGCTGAAACCGAATATATAGGCTCAAAGTTGGAAGTGAGGTTTCACGATGAACACAAATTCGTTCGGAAACTTGATAGTGTAAGCCTAACTTTTTTAATTCAGAAAACAACAGCTGTTAAAGTTTCAGAAAAAATGCTTCAAAGACTTCAGATTCACCCATTTTTCTGTTCCAAAAGAGAGCTTGGTATGACCCATAGAATTTCATTTTTTAGGAATTTTATAGCCATGCATTCCAGGTTTTAATTGAAAAAAATTTAAAAACTCACCTTCATCACTTCCATCATAGCAATCATCCACACCATCTTGCCATTTCTTCATAGAAATACACGATCTATCAATTTTACATTGAAATTCCTGTCGAGCAACACAAATTTGTGTAGTAGTAGAGTTCGAACAATATATGGAAGGATAGAATATGGTGATTGGTATGAAGAGTTTCAAAAATAACAYTGTTCCAGCCTGCATTGTTATGCGGGTGTTGTGAAAAAAATTAATCTCATCTATCTCTCGAAGTAGTATATAGTTATGCCGGTCTGTGTGAAGGCTGGCAGCAAGTCCGCAAAAGACAACCAGTCTCCCCCGGTAGGGGGGCGGAGTTCCCCGGTACGGAAAAGAAAAAGAAGAAGAAGAAGAAAGGGAACAGAGAAGGGCACTGTGCGCGGAAGGAGAAGAAAATGATGAAGACGTGAAGAAGGTGAAGGAGGGAATTGGTTTAGGTATGTAGTATATCCCATACGTCTTCCGTAAAATGACGAAGAACACCACTCTTCAATCATTATGTTGTTCTTGTTAGGTTATTCTTTTGTTTTGTTCACCAATTATTATGAAAAATGAATATTCGGTGATGCATTAATCATATTCAGCAGAGTTGGGTTTGAATTTACAAAACCTGTAATAAAAGGGCTCCTTCACTTTTAACTTTGAGCCAATTTATTTTGGTTCCTGTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTCATCACTTCCATCATAG</pcr_primer_p1>
		<pcr_primer_p2>CGAGAGATAGATGAGATTAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CCTTCATCACTTCCATCATAGCAATCATCCACACCATCTTGCCATTTCTTCATAGAAATACACGATCTATCAATTTTACATTGAAATTCCTGTCGAGCAACACAAATTTGTGTAGTAGTAGAGTTCGAACAATATATGGAAGGATAGAATATGGTGATTGGTATGAAGAGTTTCAAAAATAACATTGTTCCAGCCTGCATTGTTATGCGGGTGTTGTGAAAAAAATTAATCTCATCTATCTCTCG</canonical_amplicon>
		<polymorphic_amplicon>CCTTCATCACTTCCATCATAGCAATCATCCACACCATCTTGCCATTTCTTCATAGAAATACACGATCTATCAATTTTACATTGAAATTCCTGTCGAGCAACACAAATTTGTGTAGTAGTAGAGTTCGAACAATATATGGAAGGATAGAATATGGTGATTGGTATGAAGAGTTTCAAAAATAACAYTGTTCCAGCCTGCATTGTTATGCGGGTGTTGTGAAAAAAATTAATCTCATCTATCTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31441</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>313526</contig_pos>
        <strand>+</strand>
        <context>AACCCAACAA[C/T]TCTTCCCCCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCATCTGGCAAATCGTTCCATCGTCTTATTTGCAGAGAGAACCCAACAA</left_flank>
        <right_flank>TCTTCCCCCTCCCAACAAATTTGCTCTCTCTCTCTTCCAGAATCATCCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAGATGTCCGACAGTGGTTTTTCAGGTTTTTTACGTGGCGGAGGCAAGAAAATCCGGGAAAAATTCCACGGAAAAAAGGCGTCCGCCGCTGTGGCCTAAGTTTCTCACTGCGATGGAATTCAAATACTCGTCCCTATTCATCAGCTTTTTTAAGCAAAATTTTCCCTTTCCACGGCGTTTTTCAGGGATTCAGGTCTTCTTTGAATTTTTGTGCGATAACACGAAAAATATAATTTTTTGAAAGTTTTAATGCAATAAAAAGTTTGGTGGGAGTCCAACTTTAAAAAACTTCTTTAAATTTTGGTAACATTTTCCATTGTCTCAGTTGTTTTGAAAATTTAAATTCAAACTTCTAGGTTCTTGAAATTCTGTAATAAGCTCATTTTATTTTCCAGCTGGTGACCCATTCTTTTCTTTACTTAACTATACGAATTTCAAAATTCTCAACCCATCTGGCAAATCGTTCCATCGTCTTATTTGCAGAGAGAACCCAACAACTCTTCCCCCTCCCAACAAATTTGCTCTCTCTCTCTTCCAGAATCATCCATCCCGTTCCACTCTTTAGACACCTTCTGTTTTGATATATGCACAACGACAGGAGAAGGGGACACTGGGACACCAAAAAAACCAAGCACAGAAAACGAATGAGCGGGCGAGGGATCGAAAGCTTTTCGTGTGTCTGTGTGACGTAGCGAGAACAGAAGAGAGCAAGTGTGGAGGAAGGAAATTGTCATGCGAGGAATTGAGAAGGCGTCCTCTCTCTCTCTCCCGAATTCTCTCTCTCTCTATTTCTCCATGCTTTACTTACTCTTTATTTTTCCTAATAGTTTTTTTTTACTTTTTTAAAGGGCTCCATTCTTCTTCTTCTTGGAACCGACCCTTTCCCTCTAAACTCACCGGTCCTTCCCACCACAGCATTTGTCCAAATAATAATGGCGTCAGAACGAGAACCAATCCATTCTTCATTCGACGCAACAGACATAGCAGTCGCTCCTTGT</canonical>
            <polymorphic>TAAAGATGTCCGACAGTGGTTTTTCAGGTTTTTTACGTGGCGGAGGCAAGAAAATCCGGGAAAAATTCCACGGAAAAAAGGCGTCCGCCGCTGTGGCCTAAGTTTCTCACTGCGATGGAATTCAAATACTCGTCCCTATTCATCAGCTTTTTTAAGCAAAATTTTCCCTTTCCACGGCGTTTTTCAGGGATTCAGGTCTTCTTTGAATTTTTGTGCGATAACACGAAAAATATAATTTTTTGAAAGTTTTAATGCAATAAAAAGTTTGGTGGGAGTCCAACTTTAAAAAACTTCTTTAAATTTTGGTAACATTTTCCATTGTCTCAGTTGTTTTGAAAATTTAAATTCAAACTTCTAGGTTCTTGAAATTCTGTAATAAGCTCATTTTATTTTCCAGCTGGTGACCCATTCTTTTCTTTACTTAACTATACGAATTTCAAAATTCTCAACCCATCTGGCAAATCGTTCCATCGTCTTATTTGCAGAGAGAACCCAACAAYTCTTCCCCCTCCCAACAAATTTGCTCTCTCTCTCTTCCAGAATCATCCATCCCGTTCCACTCTTTAGACACCTTCTGTTTTGATATATGCACAACGACAGGAGAAGGGGACACTGGGACACCAAAAAAACCAAGCACAGAAAACGAATGAGCGGGCGAGGGATCGAAAGCTTTTCGTGTGTCTGTGTGACGTAGCGAGAACAGAAGAGAGCAAGTGTGGAGGAAGGAAATTGTCATGCGAGGAATTGAGAAGGCGTCCTCTCTCTCTCTCCCGAATTCTCTCTCTCTCTATTTCTCCATGCTTTACTTACTCTTTATTTTTCCTAATAGTTTTTTTTTACTTTTTTAAAGGGCTCCATTCTTCTTCTTCTTGGAACCGACCCTTTCCCTCTAAACTCACCGGTCCTTCCCACCACAGCATTTGTCCAAATAATAATGGCGTCAGAACGAGAACCAATCCATTCTTCATTCGACGCAACAGACATAGCAGTCGCTCCTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAAATTCAAACTTCTAGGTTCTT</pcr_primer_p1>
		<pcr_primer_p2>GCATATATCAAAACAGAAGGTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTAAATTCAAACTTCTAGGTTCTTGAAATTCTGTAATAAGCTCATTTTATTTTCCAGCTGGTGACCCATTCTTTTCTTTACTTAACTATACGAATTTCAAAATTCTCAACCCATCTGGCAAATCGTTCCATCGTCTTATTTGCAGAGAGAACCCAACAACTCTTCCCCCTCCCAACAAATTTGCTCTCTCTCTCTTCCAGAATCATCCATCCCGTTCCACTCTTTAGACACCTTCTGTTTTGATATATGC</canonical_amplicon>
		<polymorphic_amplicon>TTTAAATTCAAACTTCTAGGTTCTTGAAATTCTGTAATAAGCTCATTTTATTTTCCAGCTGGTGACCCATTCTTTTCTTTACTTAACTATACGAATTTCAAAATTCTCAACCCATCTGGCAAATCGTTCCATCGTCTTATTTGCAGAGAGAACCCAACAAYTCTTCCCCCTCCCAACAAATTTGCTCTCTCTCTCTTCCAGAATCATCCATCCCGTTCCACTCTTTAGACACCTTCTGTTTTGATATATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31442</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>341649</contig_pos>
        <strand>+</strand>
        <context>GGAAAACTGA[A/G]AACAAATAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTCAAGGGAGCAGTTAATTTGTATCAAAATAAAGATTGGAAAACTGA</left_flank>
        <right_flank>AACAAATAATTTAAAGCTGGGCATTGTTCGAAAGATTTCTATTTCTTCGG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTGTCTCTGTGAAAAAAAGACCAAGACACTTAAATCGCCATGTTTGGGGTTCATGGCTAGGTGGATCATTCTCCCTTTCACAAACTGACTATCAGATTTTTGCTCGCCTGGCCCTTTGTATGCATTCTTCGTTAAAAGTTGGTATTTGCAGCCAAACATAGTTCTTTAAAAAAACTAAACTTTGATTTATTTAGAACAGAAAAACATTTGCGGTAAACTTGGTTGGGTGAGTGGCGCGAAGCCAGATATAGGGGTGCCGAGATGGTGAACAATAAATTTGAGAAAACGTATTTCTTCTTATAGAAAGCCACTCTTGGAAGAGAAATACCAAGCAATTTTCAATCAACAGAATATTTGCCGTTTCATGGCACATTTTTAGAGGTGGCGTTCTATTAGAAGAATTATGGTACAGTAAAAAAGGTGGTAGGGATGTGCATAAAAAGAGGAAATTCAAGGGAGCAGTTAATTTGTATCAAAATAAAGATTGGAAAACTGAGAACAAATAATTTAAAGCTGGGCATTGTTCGAAAGATTTCTATTTCTTCGGTTTCTGTGTCTGATTTTCCTTCTTTTCTTCCTTAGTGGGAATATATTTCTTAATTCTAGGAAGTCTATCAAATGGAGGAACTCCGAAAAACATGGCAGCTGCTTCGGGTCTGTAGCGGTAGTTGATGAATAACTCCTGGCCAGTCTTCATAGCTTTTAACGTATAGAAACCAATTCGTAGATCTCCTTTGACGTATTTATATTTTATGTAGCAGTTTGGCTCATCCGAATTGTTGAGGAACCGAAGTACATTTCCGGCTCGCATAGCATCAACGTCACCACATTCGGCAAGACCTGAAAAAGTTTTTTAAAAAATTTCCTCATAGCTGGCTTGCCGAATGTATAACTGATATTGAGCAGGTGAAAAATTCCGCGGCGTTCTCCCTCCTCAACAGAGAGTCGTTCACCGACATATTCGCCTAGAAATTCTTCTTCATCACATCTTCTTGCA</canonical>
            <polymorphic>TTTTTGTCTCTGTGAAAAAAAGACCAAGACACTTAAATCGCCATGTTTGGGGTTCATGGCTAGGTGGATCATTCTCCCTTTCACAAACTGACTATCAGATTTTTGCTCGCCTGGCCCTTTGTATGCATTCTTCGTTAAAAGTTGGTATTTGCAGCCAAACATAGTTCTTTAAAAAAACTAAACTTTGATTTATTTAGAACAGAAAAACATTTGCGGTAAACTTGGTTGGGTGAGTGGCGCGAAGCCAGATATAGGGGTGCCGAGATGGTGAACAATAAATTTGAGAAAACGTATTTCTTCTTATAGAAAGCCACTCTTGGAAGAGAAATACCAAGCAATTTTCAATCAACAGAATATTTGCCGTTTCATGGCACATTTTTAGAGGTGGCGTTCTATTAGAAGAATTATGGTACAGTAAAAAAGGTGGTAGGGATGTGCATAAAAAGAGGAAATTCAAGGGAGCAGTTAATTTGTATCAAAATAAAGATTGGAAAACTGARAACAAATAATTTAAAGCTGGGCATTGTTCGAAAGATTTCTATTTCTTCGGTTTCTGTGTCTGATTTTCCTTCTTTTCTTCCTTAGTGGGAATATATTTCTTAATTCTAGGAAGTCTATCAAATGGAGGAACTCCGAAAAACATGGCAGCTGCTTCGGGTCTGTAGCGGTAGTTGATGAATAACTCCTGGCCAGTCTTCATAGCTTTTAACGTATAGAAACCAATTCGTAGATCTCCTTTGACGTATTTATATTTTATGTAGCAGTTTGGCTCATCCGAATTGTTGAGGAACCGAAGTACATTTCCGGCTCGCATAGCATCAACGTCACCACATTCGGCAAGACCTGAAAAAGTTTTTTAAAAAATTTCCTCATAGCTGGCTTGCCGAATGTATAACTGATATTGAGCAGGTGAAAAATTCCGCGGCGTTCTCCCTCCTCAACAGAGAGTCGTTCACCGACATATTCGCCTAGAAATTCTTCTTCATCACATCTTCTTGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>496 419 85</canonical_bands>
                <polymorphic_bands>581 419</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCAATTTTCAATCAACAGAATA</pcr_primer_p1>
		<pcr_primer_p2>TAAGGAAGAAAAGAAGGAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGCAATTTTCAATCAACAGAATATTTGCCGTTTCATGGCACATTTTTAGAGGTGGCGTTCTATTAGAAGAATTATGGTACAGTAAAAAAGGTGGTAGGGATGTGCATAAAAAGAGGAAATTCAAGGGAGCAGTTAATTTGTATCAAAATAAAGATTGGAAAACTGAGAACAAATAATTTAAAGCTGGGCATTGTTCGAAAGATTTCTATTTCTTCGGTTTCTGTGTCTGATTTTCCTTCTTTTCTTCCTTA</canonical_amplicon>
		<polymorphic_amplicon>AGCAATTTTCAATCAACAGAATATTTGCCGTTTCATGGCACATTTTTAGAGGTGGCGTTCTATTAGAAGAATTATGGTACAGTAAAAAAGGTGGTAGGGATGTGCATAAAAAGAGGAAATTCAAGGGAGCAGTTAATTTGTATCAAAATAAAGATTGGAAAACTGARAACAAATAATTTAAAGCTGGGCATTGTTCGAAAGATTTCTATTTCTTCGGTTTCTGTGTCTGATTTTCCTTCTTTTCTTCCTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31443</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>341697</contig_pos>
        <strand>+</strand>
        <context>TCTATTTCTT[A/C]GGTTTCTGTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAGAACAAATAATTTAAAGCTGGGCATTGTTCGAAAGATTTCTATTTCTT</left_flank>
        <right_flank>GGTTTCTGTGTCTGATTTTCCTTCTTTTCTTCCTTAGTGGGAATATATTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGGTTCATGGCTAGGTGGATCATTCTCCCTTTCACAAACTGACTATCAGATTTTTGCTCGCCTGGCCCTTTGTATGCATTCTTCGTTAAAAGTTGGTATTTGCAGCCAAACATAGTTCTTTAAAAAAACTAAACTTTGATTTATTTAGAACAGAAAAACATTTGCGGTAAACTTGGTTGGGTGAGTGGCGCGAAGCCAGATATAGGGGTGCCGAGATGGTGAACAATAAATTTGAGAAAACGTATTTCTTCTTATAGAAAGCCACTCTTGGAAGAGAAATACCAAGCAATTTTCAATCAACAGAATATTTGCCGTTTCATGGCACATTTTTAGAGGTGGCGTTCTATTAGAAGAATTATGGTACAGTAAAAAAGGTGGTAGGGATGTGCATAAAAAGAGGAAATTCAAGGGAGCAGTTAATTTGTATCAAAATAAAGATTGGAAAACTGAGAACAAATAATTTAAAGCTGGGCATTGTTCGAAAGATTTCTATTTCTTCGGTTTCTGTGTCTGATTTTCCTTCTTTTCTTCCTTAGTGGGAATATATTTCTTAATTCTAGGAAGTCTATCAAATGGAGGAACTCCGAAAAACATGGCAGCTGCTTCGGGTCTGTAGCGGTAGTTGATGAATAACTCCTGGCCAGTCTTCATAGCTTTTAACGTATAGAAACCAATTCGTAGATCTCCTTTGACGTATTTATATTTTATGTAGCAGTTTGGCTCATCCGAATTGTTGAGGAACCGAAGTACATTTCCGGCTCGCATAGCATCAACGTCACCACATTCGGCAAGACCTGAAAAAGTTTTTTAAAAAATTTCCTCATAGCTGGCTTGCCGAATGTATAACTGATATTGAGCAGGTGAAAAATTCCGCGGCGTTCTCCCTCCTCAACAGAGAGTCGTTCACCGACATATTCGCCTAGAAATTCTTCTTCATCACATCTTCTTGCAGGAAGGCACCATTGCCTGCAATCTTCGACTTTCCAACAAGGATTTTCT</canonical>
            <polymorphic>GGGGTTCATGGCTAGGTGGATCATTCTCCCTTTCACAAACTGACTATCAGATTTTTGCTCGCCTGGCCCTTTGTATGCATTCTTCGTTAAAAGTTGGTATTTGCAGCCAAACATAGTTCTTTAAAAAAACTAAACTTTGATTTATTTAGAACAGAAAAACATTTGCGGTAAACTTGGTTGGGTGAGTGGCGCGAAGCCAGATATAGGGGTGCCGAGATGGTGAACAATAAATTTGAGAAAACGTATTTCTTCTTATAGAAAGCCACTCTTGGAAGAGAAATACCAAGCAATTTTCAATCAACAGAATATTTGCCGTTTCATGGCACATTTTTAGAGGTGGCGTTCTATTAGAAGAATTATGGTACAGTAAAAAAGGTGGTAGGGATGTGCATAAAAAGAGGAAATTCAAGGGAGCAGTTAATTTGTATCAAAATAAAGATTGGAAAACTGAGAACAAATAATTTAAAGCTGGGCATTGTTCGAAAGATTTCTATTTCTTMGGTTTCTGTGTCTGATTTTCCTTCTTTTCTTCCTTAGTGGGAATATATTTCTTAATTCTAGGAAGTCTATCAAATGGAGGAACTCCGAAAAACATGGCAGCTGCTTCGGGTCTGTAGCGGTAGTTGATGAATAACTCCTGGCCAGTCTTCATAGCTTTTAACGTATAGAAACCAATTCGTAGATCTCCTTTGACGTATTTATATTTTATGTAGCAGTTTGGCTCATCCGAATTGTTGAGGAACCGAAGTACATTTCCGGCTCGCATAGCATCAACGTCACCACATTCGGCAAGACCTGAAAAAGTTTTTTAAAAAATTTCCTCATAGCTGGCTTGCCGAATGTATAACTGATATTGAGCAGGTGAAAAATTCCGCGGCGTTCTCCCTCCTCAACAGAGAGTCGTTCACCGACATATTCGCCTAGAAATTCTTCTTCATCACATCTTCTTGCAGGAAGGCACCATTGCCTGCAATCTTCGACTTTCCAACAAGGATTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCATAAAAAGAGGAAATTCAAG</pcr_primer_p1>
		<pcr_primer_p2>AGTTATTCATCAACTACCGCTAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCATAAAAAGAGGAAATTCAAGGGAGCAGTTAATTTGTATCAAAATAAAGATTGGAAAACTGAGAACAAATAATTTAAAGCTGGGCATTGTTCGAAAGATTTCTATTTCTTCGGTTTCTGTGTCTGATTTTCCTTCTTTTCTTCCTTAGTGGGAATATATTTCTTAATTCTAGGAAGTCTATCAAATGGAGGAACTCCGAAAAACATGGCAGCTGCTTCGGGTCTGTAGCGGTAGTTGATGAATAACT</canonical_amplicon>
		<polymorphic_amplicon>GCATAAAAAGAGGAAATTCAAGGGAGCAGTTAATTTGTATCAAAATAAAGATTGGAAAACTGAGAACAAATAATTTAAAGCTGGGCATTGTTCGAAAGATTTCTATTTCTTMGGTTTCTGTGTCTGATTTTCCTTCTTTTCTTCCTTAGTGGGAATATATTTCTTAATTCTAGGAAGTCTATCAAATGGAGGAACTCCGAAAAACATGGCAGCTGCTTCGGGTCTGTAGCGGTAGTTGATGAATAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31444</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>341749</contig_pos>
        <strand>+</strand>
        <context>AATATATTTC[C/T]TAATTCTAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTCTGTGTCTGATTTTCCTTCTTTTCTTCCTTAGTGGGAATATATTTC</left_flank>
        <right_flank>TAATTCTAGGAAGTCTATCAAATGGAGGAACTCCGAAAAACATGGCAGCT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGCTCGCCTGGCCCTTTGTATGCATTCTTCGTTAAAAGTTGGTATTTGCAGCCAAACATAGTTCTTTAAAAAAACTAAACTTTGATTTATTTAGAACAGAAAAACATTTGCGGTAAACTTGGTTGGGTGAGTGGCGCGAAGCCAGATATAGGGGTGCCGAGATGGTGAACAATAAATTTGAGAAAACGTATTTCTTCTTATAGAAAGCCACTCTTGGAAGAGAAATACCAAGCAATTTTCAATCAACAGAATATTTGCCGTTTCATGGCACATTTTTAGAGGTGGCGTTCTATTAGAAGAATTATGGTACAGTAAAAAAGGTGGTAGGGATGTGCATAAAAAGAGGAAATTCAAGGGAGCAGTTAATTTGTATCAAAATAAAGATTGGAAAACTGAGAACAAATAATTTAAAGCTGGGCATTGTTCGAAAGATTTCTATTTCTTCGGTTTCTGTGTCTGATTTTCCTTCTTTTCTTCCTTAGTGGGAATATATTTCTTAATTCTAGGAAGTCTATCAAATGGAGGAACTCCGAAAAACATGGCAGCTGCTTCGGGTCTGTAGCGGTAGTTGATGAATAACTCCTGGCCAGTCTTCATAGCTTTTAACGTATAGAAACCAATTCGTAGATCTCCTTTGACGTATTTATATTTTATGTAGCAGTTTGGCTCATCCGAATTGTTGAGGAACCGAAGTACATTTCCGGCTCGCATAGCATCAACGTCACCACATTCGGCAAGACCTGAAAAAGTTTTTTAAAAAATTTCCTCATAGCTGGCTTGCCGAATGTATAACTGATATTGAGCAGGTGAAAAATTCCGCGGCGTTCTCCCTCCTCAACAGAGAGTCGTTCACCGACATATTCGCCTAGAAATTCTTCTTCATCACATCTTCTTGCAGGAAGGCACCATTGCCTGCAATCTTCGACTTTCCAACAAGGATTTTCTTCAAACCTCCTTTTGTCATTTCGTAATTGTCACATGACGAAAGTTCCAGTGT</canonical>
            <polymorphic>TTTTGCTCGCCTGGCCCTTTGTATGCATTCTTCGTTAAAAGTTGGTATTTGCAGCCAAACATAGTTCTTTAAAAAAACTAAACTTTGATTTATTTAGAACAGAAAAACATTTGCGGTAAACTTGGTTGGGTGAGTGGCGCGAAGCCAGATATAGGGGTGCCGAGATGGTGAACAATAAATTTGAGAAAACGTATTTCTTCTTATAGAAAGCCACTCTTGGAAGAGAAATACCAAGCAATTTTCAATCAACAGAATATTTGCCGTTTCATGGCACATTTTTAGAGGTGGCGTTCTATTAGAAGAATTATGGTACAGTAAAAAAGGTGGTAGGGATGTGCATAAAAAGAGGAAATTCAAGGGAGCAGTTAATTTGTATCAAAATAAAGATTGGAAAACTGAGAACAAATAATTTAAAGCTGGGCATTGTTCGAAAGATTTCTATTTCTTCGGTTTCTGTGTCTGATTTTCCTTCTTTTCTTCCTTAGTGGGAATATATTTCYTAATTCTAGGAAGTCTATCAAATGGAGGAACTCCGAAAAACATGGCAGCTGCTTCGGGTCTGTAGCGGTAGTTGATGAATAACTCCTGGCCAGTCTTCATAGCTTTTAACGTATAGAAACCAATTCGTAGATCTCCTTTGACGTATTTATATTTTATGTAGCAGTTTGGCTCATCCGAATTGTTGAGGAACCGAAGTACATTTCCGGCTCGCATAGCATCAACGTCACCACATTCGGCAAGACCTGAAAAAGTTTTTTAAAAAATTTCCTCATAGCTGGCTTGCCGAATGTATAACTGATATTGAGCAGGTGAAAAATTCCGCGGCGTTCTCCCTCCTCAACAGAGAGTCGTTCACCGACATATTCGCCTAGAAATTCTTCTTCATCACATCTTCTTGCAGGAAGGCACCATTGCCTGCAATCTTCGACTTTCCAACAAGGATTTTCTTCAAACCTCCTTTTGTCATTTCGTAATTGTCACATGACGAAAGTTCCAGTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>297 243 151 106 89 45 35 34</canonical_bands>
                <polymorphic_bands>297 243 195 151 45 35 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTTCGAAAGATTTCTATTTCT</pcr_primer_p1>
		<pcr_primer_p2>GAGCCAAACTGCTACATAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGTTCGAAAGATTTCTATTTCTTCGGTTTCTGTGTCTGATTTTCCTTCTTTTCTTCCTTAGTGGGAATATATTTCTTAATTCTAGGAAGTCTATCAAATGGAGGAACTCCGAAAAACATGGCAGCTGCTTCGGGTCTGTAGCGGTAGTTGATGAATAACTCCTGGCCAGTCTTCATAGCTTTTAACGTATAGAAACCAATTCGTAGATCTCCTTTGACGTATTTATATTTTATGTAGCAGTTTGGCTC</canonical_amplicon>
		<polymorphic_amplicon>TTGTTCGAAAGATTTCTATTTCTTCGGTTTCTGTGTCTGATTTTCCTTCTTTTCTTCCTTAGTGGGAATATATTTCYTAATTCTAGGAAGTCTATCAAATGGAGGAACTCCGAAAAACATGGCAGCTGCTTCGGGTCTGTAGCGGTAGTTGATGAATAACTCCTGGCCAGTCTTCATAGCTTTTAACGTATAGAAACCAATTCGTAGATCTCCTTTGACGTATTTATATTTTATGTAGCAGTTTGGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31445</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>342007</contig_pos>
        <strand>+</strand>
        <context>AAAAGTTTTT[A/T]AAAAAATTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCGCATAGCATCAACGTCACCACATTCGGCAAGACCTGAAAAAGTTTTT</left_flank>
        <right_flank>AAAAAATTTCCTCATAGCTGGCTTGCCGAATGTATAACTGATATTGAGCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCCGTTTCATGGCACATTTTTAGAGGTGGCGTTCTATTAGAAGAATTATGGTACAGTAAAAAAGGTGGTAGGGATGTGCATAAAAAGAGGAAATTCAAGGGAGCAGTTAATTTGTATCAAAATAAAGATTGGAAAACTGAGAACAAATAATTTAAAGCTGGGCATTGTTCGAAAGATTTCTATTTCTTCGGTTTCTGTGTCTGATTTTCCTTCTTTTCTTCCTTAGTGGGAATATATTTCTTAATTCTAGGAAGTCTATCAAATGGAGGAACTCCGAAAAACATGGCAGCTGCTTCGGGTCTGTAGCGGTAGTTGATGAATAACTCCTGGCCAGTCTTCATAGCTTTTAACGTATAGAAACCAATTCGTAGATCTCCTTTGACGTATTTATATTTTATGTAGCAGTTTGGCTCATCCGAATTGTTGAGGAACCGAAGTACATTTCCGGCTCGCATAGCATCAACGTCACCACATTCGGCAAGACCTGAAAAAGTTTTTTAAAAAATTTCCTCATAGCTGGCTTGCCGAATGTATAACTGATATTGAGCAGGTGAAAAATTCCGCGGCGTTCTCCCTCCTCAACAGAGAGTCGTTCACCGACATATTCGCCTAGAAATTCTTCTTCATCACATCTTCTTGCAGGAAGGCACCATTGCCTGCAATCTTCGACTTTCCAACAAGGATTTTCTTCAAACCTCCTTTTGTCATTTCGTAATTGTCACATGACGAAAGTTCCAGTGTATCATCTTCAACGCACTGTCTACAAGTTAATTCTGAACACTCGAAATCGATTTCAAAGCATGGACACTGTTGGGTCTGACACATGCCCGGCGGGCACTCGCAACCTGGGAACTTTCGGTTACAATTGAAGTCGCAGTTGCAGAAGACTGTACAGAAGCGTTTGCATGGACAATTTCGAACCCCTGGCCCACAAGGACCAAGATGATCACATAGAGTTGTGTAATCTTCGTATTTTTTGTCCTTGCCCTTATTCTTTTC</canonical>
            <polymorphic>TGCCGTTTCATGGCACATTTTTAGAGGTGGCGTTCTATTAGAAGAATTATGGTACAGTAAAAAAGGTGGTAGGGATGTGCATAAAAAGAGGAAATTCAAGGGAGCAGTTAATTTGTATCAAAATAAAGATTGGAAAACTGAGAACAAATAATTTAAAGCTGGGCATTGTTCGAAAGATTTCTATTTCTTCGGTTTCTGTGTCTGATTTTCCTTCTTTTCTTCCTTAGTGGGAATATATTTCTTAATTCTAGGAAGTCTATCAAATGGAGGAACTCCGAAAAACATGGCAGCTGCTTCGGGTCTGTAGCGGTAGTTGATGAATAACTCCTGGCCAGTCTTCATAGCTTTTAACGTATAGAAACCAATTCGTAGATCTCCTTTGACGTATTTATATTTTATGTAGCAGTTTGGCTCATCCGAATTGTTGAGGAACCGAAGTACATTTCCGGCTCGCATAGCATCAACGTCACCACATTCGGCAAGACCTGAAAAAGTTTTTWAAAAAATTTCCTCATAGCTGGCTTGCCGAATGTATAACTGATATTGAGCAGGTGAAAAATTCCGCGGCGTTCTCCCTCCTCAACAGAGAGTCGTTCACCGACATATTCGCCTAGAAATTCTTCTTCATCACATCTTCTTGCAGGAAGGCACCATTGCCTGCAATCTTCGACTTTCCAACAAGGATTTTCTTCAAACCTCCTTTTGTCATTTCGTAATTGTCACATGACGAAAGTTCCAGTGTATCATCTTCAACGCACTGTCTACAAGTTAATTCTGAACACTCGAAATCGATTTCAAAGCATGGACACTGTTGGGTCTGACACATGCCCGGCGGGCACTCGCAACCTGGGAACTTTCGGTTACAATTGAAGTCGCAGTTGCAGAAGACTGTACAGAAGCGTTTGCATGGACAATTTCGAACCCCTGGCCCACAAGGACCAAGATGATCACATAGAGTTGTGTAATCTTCGTATTTTTTGTCCTTGCCCTTATTCTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 346 154</canonical_bands>
                <polymorphic_bands>846 154</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>270 231 151 108 106 89 45</canonical_bands>
                <polymorphic_bands>421 231 108 106 89 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCCTTTGACGTATTTATATTTTATG</pcr_primer_p1>
		<pcr_primer_p2>AGAAGAATTTCTAGGCGAATATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCCTTTGACGTATTTATATTTTATGTAGCAGTTTGGCTCATCCGAATTGTTGAGGAACCGAAGTACATTTCCGGCTCGCATAGCATCAACGTCACCACATTCGGCAAGACCTGAAAAAGTTTTTTAAAAAATTTCCTCATAGCTGGCTTGCCGAATGTATAACTGATATTGAGCAGGTGAAAAATTCCGCGGCGTTCTCCCTCCTCAACAGAGAGTCGTTCACCGACATATTCGCCTAGAAATTCTTCT</canonical_amplicon>
		<polymorphic_amplicon>CTCCTTTGACGTATTTATATTTTATGTAGCAGTTTGGCTCATCCGAATTGTTGAGGAACCGAAGTACATTTCCGGCTCGCATAGCATCAACGTCACCACATTCGGCAAGACCTGAAAAAGTTTTTWAAAAAATTTCCTCATAGCTGGCTTGCCGAATGTATAACTGATATTGAGCAGGTGAAAAATTCCGCGGCGTTCTCCCTCCTCAACAGAGAGTCGTTCACCGACATATTCGCCTAGAAATTCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31446</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>359216</contig_pos>
        <strand>+</strand>
        <context>TCAATTAAGT[C/T]CTTGYTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCAGTATTTAAGACATTGAATCATTCTAAATTTATTTTCAATTAAGT</left_flank>
        <right_flank>CTTGTTTTTTTTCTTTTTACTTTCCCAATTCTAATTGTTTCAGGAGTAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTACAAATGGCCGAAAATCAACTGAAAAATACGTCTTTCTATTAAAAATTTTATTGAACAGTACTGTACATAAATTCTGAAATTATTATTTTTTCAATTTCTAGTGAAATATAGTACATGTAAAAAAATTGTTCCTAAAGTTTGTTTTTCATACTTCCAAAGGTTAGTTAAATTTTTTGAATTCAATTCCAAAACCTATCAAATCTTCTCTACCTATTCCTATAACTATCCTCTCCTCATATGTCTGAATACGTCATTTGAATGTTAAACAATTCCTTTTCTCTTTTTTGTCCATGTCCATGTCTCCCCTTTTTCCGTTAACTTATTTCTTAACTTCCCTCTAAACCGGTTATCCCATTCTTTGCCCATTTTGTGATTCCTCCTCGTCCGTCTGTTCCATTATCCATCTACATTTGCATTACCTAAATTGTTTGACTTTCAAATGCATTTTCAGTATTTAAGACATTGAATCATTCTAAATTTATTTTCAATTAAGTTCTTGTTTTTTTTCTTTTTACTTTCCCAATTCTAATTGTTTCAGGAGTAATTATGGGTGTGAAAACAGAATTCCGATCATCCGAGCCAATTTCGGATCTCGAAAAGAGCCAAATCAACTCGGTTCGTGCAATGCTCCAGGAGAAACTTCCAAATGGAATTCCTGATGACGTCAACACCGATTTGAATCTCTGTCGTTGGTTGAGAGGATATCATGGAGATATGGAAAAAATCGTGAAGAACTTTGCAACATATTTGGCATCTAGAAAAGCAGCTGGATTTGTTGGAGACGATTTTGCGGAGAAGTTCTTCGAACTTCCGGATATTGAACCTTTCCTGCAGTACATTGCTTCTTCAAGACTCCAGGATCGTCAATGGTCGGATGAACATAACGCGTTTTTATTTGTTGAAAGAGCTTGGTCCCAACCAAAAGAATTCATTAAAACTTTCAAAACCAGTGACTATCTTCTTCACTGCTTTGGATACTCTGAAATGCTTCAACA</canonical>
            <polymorphic>TGGTACAAATGGCCGAAAATCAACTGAAAAATACGTCTTTCTATTAAAAATTTTATTGAACAGTACTGTACATAAATTCTGAAATTATTATTTTTTCAATTTCTAGTGAAATATAGTACATGTAAAAAAATTGTTCCTAAAGTTTGTTTTTCATACTTCCAAAGGTTAGTTAAATTTTTTGAATTCAATTCCAAAACCTATCAAATCTTCTCTACCTATTCCTATAACTATCCTCTCCTCATATGTCTGAATACGTCATTTGAATGTTAAACAATTCCTTTTCTCTTTTTTGTCCATGTCCATGTCTCCCCTTTTTCCGTTAACTTATTTCTTAACTTCCCTCTAAACCGGTTATCCCATTCTTTGCCCATTTTGTGATTCCTCCTCGTCCGTCTGTTCCATTATCCATCTACATTTGCATTACCTAAATTGTTTGACTTTCAAATGCATTTTCAGTATTTAAGACATTGAATCATTCTAAATTTATTTTCAATTAAGTYCTTGTTTTTTTTCTTTTTACTTTCCCAATTCTAATTGTTTCAGGAGTAATTATGGGTGTGAAAACAGAATTCCGATCATCCGAGCCAATTTCGGATCTCGAAAAGAGCCAAATCAACTCGGTTCGTGCAATGCTCCAGGAGAAACTTCCAAATGGAATTCCTGATGACGTCAACACCGATTTGAATCTCTGTCGTTGGTTGAGAGGATATCATGGAGATATGGAAAAAATCGTGAAGAACTTTGCAACATATTTGGCATCTAGAAAAGCAGCTGGATTTGTTGGAGACGATTTTGCGGAGAAGTTCTTCGAACTTCCGGATATTGAACCTTTCCTGCAGTACATTGCTTCTTCAAGACTCCAGGATCGTCAATGGTCGGATGAACATAACGCGTTTTTATTTGTTGAAAGAGCTTGGTCCCAACCAAAAGAATTCATTAAAACTTTCAAAACCAGTGACTATCTTCTTCACTGCTTTGGATACTCTGAAATGCTTCAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTTTTCCGTTAACTTATTTCT</pcr_primer_p1>
		<pcr_primer_p2>ACACCCATAATTACTCCTGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTTTTTCCGTTAACTTATTTCTTAACTTCCCTCTAAACCGGTTATCCCATTCTTTGCCCATTTTGTGATTCCTCCTCGTCCGTCTGTTCCATTATCCATCTACATTTGCATTACCTAAATTGTTTGACTTTCAAATGCATTTTCAGTATTTAAGACATTGAATCATTCTAAATTTATTTTCAATTAAGTTCTTGTTTTTTTTCTTTTTACTTTCCCAATTCTAATTGTTTCAGGAGTAATTATGGGTGT</canonical_amplicon>
		<polymorphic_amplicon>CCTTTTTCCGTTAACTTATTTCTTAACTTCCCTCTAAACCGGTTATCCCATTCTTTGCCCATTTTGTGATTCCTCCTCGTCCGTCTGTTCCATTATCCATCTACATTTGCATTACCTAAATTGTTTGACTTTCAAATGCATTTTCAGTATTTAAGACATTGAATCATTCTAAATTTATTTTCAATTAAGTYCTTGTTTTTTTTCTTTTTACTTTCCCAATTCTAATTGTTTCAGGAGTAATTATGGGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31447</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>359221</contig_pos>
        <strand>+</strand>
        <context>TAAGTYCTTG[C/T]TTTTTTTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTATTTAAGACATTGAATCATTCTAAATTTATTTTCAATTAAGTTCTTG</left_flank>
        <right_flank>TTTTTTTCTTTTTACTTTCCCAATTCTAATTGTTTCAGGAGTAATTATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATGGCCGAAAATCAACTGAAAAATACGTCTTTCTATTAAAAATTTTATTGAACAGTACTGTACATAAATTCTGAAATTATTATTTTTTCAATTTCTAGTGAAATATAGTACATGTAAAAAAATTGTTCCTAAAGTTTGTTTTTCATACTTCCAAAGGTTAGTTAAATTTTTTGAATTCAATTCCAAAACCTATCAAATCTTCTCTACCTATTCCTATAACTATCCTCTCCTCATATGTCTGAATACGTCATTTGAATGTTAAACAATTCCTTTTCTCTTTTTTGTCCATGTCCATGTCTCCCCTTTTTCCGTTAACTTATTTCTTAACTTCCCTCTAAACCGGTTATCCCATTCTTTGCCCATTTTGTGATTCCTCCTCGTCCGTCTGTTCCATTATCCATCTACATTTGCATTACCTAAATTGTTTGACTTTCAAATGCATTTTCAGTATTTAAGACATTGAATCATTCTAAATTTATTTTCAATTAAGTTCTTGTTTTTTTTCTTTTTACTTTCCCAATTCTAATTGTTTCAGGAGTAATTATGGGTGTGAAAACAGAATTCCGATCATCCGAGCCAATTTCGGATCTCGAAAAGAGCCAAATCAACTCGGTTCGTGCAATGCTCCAGGAGAAACTTCCAAATGGAATTCCTGATGACGTCAACACCGATTTGAATCTCTGTCGTTGGTTGAGAGGATATCATGGAGATATGGAAAAAATCGTGAAGAACTTTGCAACATATTTGGCATCTAGAAAAGCAGCTGGATTTGTTGGAGACGATTTTGCGGAGAAGTTCTTCGAACTTCCGGATATTGAACCTTTCCTGCAGTACATTGCTTCTTCAAGACTCCAGGATCGTCAATGGTCGGATGAACATAACGCGTTTTTATTTGTTGAAAGAGCTTGGTCCCAACCAAAAGAATTCATTAAAACTTTCAAAACCAGTGACTATCTTCTTCACTGCTTTGGATACTCTGAAATGCTTCAACAACTTA</canonical>
            <polymorphic>CAAATGGCCGAAAATCAACTGAAAAATACGTCTTTCTATTAAAAATTTTATTGAACAGTACTGTACATAAATTCTGAAATTATTATTTTTTCAATTTCTAGTGAAATATAGTACATGTAAAAAAATTGTTCCTAAAGTTTGTTTTTCATACTTCCAAAGGTTAGTTAAATTTTTTGAATTCAATTCCAAAACCTATCAAATCTTCTCTACCTATTCCTATAACTATCCTCTCCTCATATGTCTGAATACGTCATTTGAATGTTAAACAATTCCTTTTCTCTTTTTTGTCCATGTCCATGTCTCCCCTTTTTCCGTTAACTTATTTCTTAACTTCCCTCTAAACCGGTTATCCCATTCTTTGCCCATTTTGTGATTCCTCCTCGTCCGTCTGTTCCATTATCCATCTACATTTGCATTACCTAAATTGTTTGACTTTCAAATGCATTTTCAGTATTTAAGACATTGAATCATTCTAAATTTATTTTCAATTAAGTTCTTGYTTTTTTTCTTTTTACTTTCCCAATTCTAATTGTTTCAGGAGTAATTATGGGTGTGAAAACAGAATTCCGATCATCCGAGCCAATTTCGGATCTCGAAAAGAGCCAAATCAACTCGGTTCGTGCAATGCTCCAGGAGAAACTTCCAAATGGAATTCCTGATGACGTCAACACCGATTTGAATCTCTGTCGTTGGTTGAGAGGATATCATGGAGATATGGAAAAAATCGTGAAGAACTTTGCAACATATTTGGCATCTAGAAAAGCAGCTGGATTTGTTGGAGACGATTTTGCGGAGAAGTTCTTCGAACTTCCGGATATTGAACCTTTCCTGCAGTACATTGCTTCTTCAAGACTCCAGGATCGTCAATGGTCGGATGAACATAACGCGTTTTTATTTGTTGAAAGAGCTTGGTCCCAACCAAAAGAATTCATTAAAACTTTCAAAACCAGTGACTATCTTCTTCACTGCTTTGGATACTCTGAAATGCTTCAACAACTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTTTTCCGTTAACTTATTTCT</pcr_primer_p1>
		<pcr_primer_p2>ACACCCATAATTACTCCTGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTTTTTCCGTTAACTTATTTCTTAACTTCCCTCTAAACCGGTTATCCCATTCTTTGCCCATTTTGTGATTCCTCCTCGTCCGTCTGTTCCATTATCCATCTACATTTGCATTACCTAAATTGTTTGACTTTCAAATGCATTTTCAGTATTTAAGACATTGAATCATTCTAAATTTATTTTCAATTAAGTTCTTGTTTTTTTTCTTTTTACTTTCCCAATTCTAATTGTTTCAGGAGTAATTATGGGTGT</canonical_amplicon>
		<polymorphic_amplicon>CCTTTTTCCGTTAACTTATTTCTTAACTTCCCTCTAAACCGGTTATCCCATTCTTTGCCCATTTTGTGATTCCTCCTCGTCCGTCTGTTCCATTATCCATCTACATTTGCATTACCTAAATTGTTTGACTTTCAAATGCATTTTCAGTATTTAAGACATTGAATCATTCTAAATTTATTTTCAATTAAGTTCTTGYTTTTTTTCTTTTTACTTTCCCAATTCTAATTGTTTCAGGAGTAATTATGGGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31448</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>359241</contig_pos>
        <strand></strand>
        <context>TTTTACTTTC[C/T]CAATTCTAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCTAAATTTATTTTCAATTAAGTTCTTGTTTTTTTTCTTTTTACTTTC</left_flank>
        <right_flank>CAATTCTAATTGTTTCAGGAGTAATTATGGGTGTGAAAACAGAATTCCGA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAATACGTCTTTCTATTAAAAATTTTATTGAACAGTACTGTACATAAATTCTGAAATTATTATTTTTTCAATTTCTAGTGAAATATAGTACATGTAAAAAAATTGTTCCTAAAGTTTGTTTTTCATACTTCCAAAGGTTAGTTAAATTTTTTGAATTCAATTCCAAAACCTATCAAATCTTCTCTACCTATTCCTATAACTATCCTCTCCTCATATGTCTGAATACGTCATTTGAATGTTAAACAATTCCTTTTCTCTTTTTTGTCCATGTCCATGTCTCCCCTTTTTCCGTTAACTTATTTCTTAACTTCCCTCTAAACCGGTTATCCCATTCTTTGCCCATTTTGTGATTCCTCCTCGTCCGTCTGTTCCATTATCCATCTACATTTGCATTACCTAAATTGTTTGACTTTCAAATGCATTTTCAGTATTTAAGACATTGAATCATTCTAAATTTATTTTCAATTAAGTTCTTGTTTTTTTTCTTTTTACTTTCCCAATTCTAATTGTTTCAGGAGTAATTATGGGTGTGAAAACAGAATTCCGATCATCCGAGCCAATTTCGGATCTCGAAAAGAGCCAAATCAACTCGGTTCGTGCAATGCTCCAGGAGAAACTTCCAAATGGAATTCCTGATGACGTCAACACCGATTTGAATCTCTGTCGTTGGTTGAGAGGATATCATGGAGATATGGAAAAAATCGTGAAGAACTTTGCAACATATTTGGCATCTAGAAAAGCAGCTGGATTTGTTGGAGACGATTTTGCGGAGAAGTTCTTCGAACTTCCGGATATTGAACCTTTCCTGCAGTACATTGCTTCTTCAAGACTCCAGGATCGTCAATGGTCGGATGAACATAACGCGTTTTTATTTGTTGAAAGAGCTTGGTCCCAACCAAAAGAATTCATTAAAACTTTCAAAACCAGTGACTATCTTCTTCACTGCTTTGGATACTCTGAAATGCTTCAACAACTTATTTTAAGACGAGAAAAGAAG</canonical>
            <polymorphic>GAAAAATACGTCTTTCTATTAAAAATTTTATTGAACAGTACTGTACATAAATTCTGAAATTATTATTTTTTCAATTTCTAGTGAAATATAGTACATGTAAAAAAATTGTTCCTAAAGTTTGTTTTTCATACTTCCAAAGGTTAGTTAAATTTTTTGAATTCAATTCCAAAACCTATCAAATCTTCTCTACCTATTCCTATAACTATCCTCTCCTCATATGTCTGAATACGTCATTTGAATGTTAAACAATTCCTTTTCTCTTTTTTGTCCATGTCCATGTCTCCCCTTTTTCCGTTAACTTATTTCTTAACTTCCCTCTAAACCGGTTATCCCATTCTTTGCCCATTTTGTGATTCCTCCTCGTCCGTCTGTTCCATTATCCATCTACATTTGCATTACCTAAATTGTTTGACTTTCAAATGCATTTTCAGTATTTAAGACATTGAATCATTCTAAATTTATTTTCAATTAAGTTCTTGTTTTTTTTCTTTTTACTTTCYCAATTCTAATTGTTTCAGGAGTAATTATGGGTGTGAAAACAGAATTCCGATCATCCGAGCCAATTTCGGATCTCGAAAAGAGCCAAATCAACTCGGTTCGTGCAATGCTCCAGGAGAAACTTCCAAATGGAATTCCTGATGACGTCAACACCGATTTGAATCTCTGTCGTTGGTTGAGAGGATATCATGGAGATATGGAAAAAATCGTGAAGAACTTTGCAACATATTTGGCATCTAGAAAAGCAGCTGGATTTGTTGGAGACGATTTTGCGGAGAAGTTCTTCGAACTTCCGGATATTGAACCTTTCCTGCAGTACATTGCTTCTTCAAGACTCCAGGATCGTCAATGGTCGGATGAACATAACGCGTTTTTATTTGTTGAAAGAGCTTGGTCCCAACCAAAAGAATTCATTAAAACTTTCAAAACCAGTGACTATCTTCTTCACTGCTTTGGATACTCTGAAATGCTTCAACAACTTATTTTAAGACGAGAAAAGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTGCATTACCTAAATTGTTT</pcr_primer_p1>
		<pcr_primer_p2>GAATTCCATTTGGAAGTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CATTTGCATTACCTAAATTGTTTGACTTTCAAATGCATTTTCAGTATTTAAGACATTGAATCATTCTAAATTTATTTTCAATTAAGTTCTTGTTTTTTTTCTTTTTACTTTCCCAATTCTAATTGTTTCAGGAGTAATTATGGGTGTGAAAACAGAATTCCGATCATCCGAGCCAATTTCGGATCTCGAAAAGAGCCAAATCAACTCGGTTCGTGCAATGCTCCAGGAGAAACTTCCAAATGGAATTC</canonical_amplicon>
		<polymorphic_amplicon>CATTTGCATTACCTAAATTGTTTGACTTTCAAATGCATTTTCAGTATTTAAGACATTGAATCATTCTAAATTTATTTTCAATTAAGTTCTTGTTTTTTTTCTTTTTACTTTCYCAATTCTAATTGTTTCAGGAGTAATTATGGGTGTGAAAACAGAATTCCGATCATCCGAGCCAATTTCGGATCTCGAAAAGAGCCAAATCAACTCGGTTCGTGCAATGCTCCAGGAGAAACTTCCAAATGGAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31449</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>364989</contig_pos>
        <strand>+</strand>
        <context>AATAATACTT[G/T]TGAAATTCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGCTCCGAAAATATTTTCGTCGAGATTTTCTTTAGGTTAAAATAATACTT</left_flank>
        <right_flank>TGAAATTCCGGGCCCGGGCCGGGCCTGTTGAAATTTTCAAGGCCCGGGCC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTAACAAAAAAAACATTGGGATAGAAGAAAACGACTTCGGCTGTCTGATACCGAAGTAAATGGGAATAGCTTAATAGATTCTGACACTTAATAATGATTACTGATGAACTACTGCGATTTCGATGATATTTATACCTTTCAGAATTAAAGACTGTAAGCAGTAGTCGAAATATCTGGAACTTCTTTCCCATCAGGGCCGAGCAAAAAAACGACCTCCGACAAAAAACTTTTTTGCGGAAATTTCGACTAAAAATATCGAAAAGCACTAGACAAAAAGATTTCCGATTTTCTGGAAGGTTCTCGAAAAATTTTCGAAGTTATCAAGCTAATCCAATAGATTTTTTCTTATTCTTAAAATTCTATTTTTAACGAATTGTCCATACTTTTCAACCGACCGAAAAAAAACCAACGAAAAATTATTTTTTCTAAAAATTTACAGTATCCAGAGCTCCGAAAATATTTTCGTCGAGATTTTCTTTAGGTTAAAATAATACTTTTGAAATTCCGGGCCCGGGCCGGGCCTGTTGAAATTTTCAAGGCCCGGGCCCGGTAGCAAAAATTTTGTCATTTTGAGCCAAAATTCGAGCTCTCAATTCAATTTTCTCCATTTTTTTTTGTGTTTTTGAATTGTTTGTCTGTTTGATCAAAAATATCAAAACTCGAAAAAATTTTTGATCGAAAAAAATCACATAAGGGTCATAAAAGTTCTCTGGGGTGTTCTGATTAGTTTCCACTAACTTCCAAAATTACTATCTCTCCTATTCGTCGGTTTTTTTCCCTTTTTTCCCAAAAGAACCCACCTTCACTACTTTTCGAAAAGTAGTTGCGAGAATATAAAAAACGGAGATAAAAGATTTGTGATCACCTAATTGCCTTTCTTTCTCCCTTCGTGTGAAACCAAAAGAACTCTAATCGAAATGTCTCTGTTGATCTAATAAACACCGATTATTTTTCTTTTCACTCGAGGAAAGTTGAACTTTTGGAATTGGACTGCTGA</canonical>
            <polymorphic>AAATTAACAAAAAAAACATTGGGATAGAAGAAAACGACTTCGGCTGTCTGATACCGAAGTAAATGGGAATAGCTTAATAGATTCTGACACTTAATAATGATTACTGATGAACTACTGCGATTTCGATGATATTTATACCTTTCAGAATTAAAGACTGTAAGCAGTAGTCGAAATATCTGGAACTTCTTTCCCATCAGGGCCGAGCAAAAAAACGACCTCCGACAAAAAACTTTTTTGCGGAAATTTCGACTAAAAATATCGAAAAGCACTAGACAAAAAGATTTCCGATTTTCTGGAAGGTTCTCGAAAAATTTTCGAAGTTATCAAGCTAATCCAATAGATTTTTTCTTATTCTTAAAATTCTATTTTTAACGAATTGTCCATACTTTTCAACCGACCGAAAAAAAACCAACGAAAAATTATTTTTTCTAAAAATTTACAGTATCCAGAGCTCCGAAAATATTTTCGTCGAGATTTTCTTTAGGTTAAAATAATACTTKTGAAATTCCGGGCCCGGGCCGGGCCTGTTGAAATTTTCAAGGCCCGGGCCCGGTAGCAAAAATTTTGTCATTTTGAGCCAAAATTCGAGCTCTCAATTCAATTTTCTCCATTTTTTTTTGTGTTTTTGAATTGTTTGTCTGTTTGATCAAAAATATCAAAACTCGAAAAAATTTTTGATCGAAAAAAATCACATAAGGGTCATAAAAGTTCTCTGGGGTGTTCTGATTAGTTTCCACTAACTTCCAAAATTACTATCTCTCCTATTCGTCGGTTTTTTTCCCTTTTTTCCCAAAAGAACCCACCTTCACTACTTTTCGAAAAGTAGTTGCGAGAATATAAAAAACGGAGATAAAAGATTTGTGATCACCTAATTGCCTTTCTTTCTCCCTTCGTGTGAAACCAAAAGAACTCTAATCGAAATGTCTCTGTTGATCTAATAAACACCGATTATTTTTCTTTTCACTCGAGGAAAGTTGAACTTTTGGAATTGGACTGCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTAACGAATTGTCCATACTT</pcr_primer_p1>
		<pcr_primer_p2>AAATGGAGAAAATTGAATTGAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTTTAACGAATTGTCCATACTTTTCAACCGACCGAAAAAAAACCAACGAAAAATTATTTTTTCTAAAAATTTACAGTATCCAGAGCTCCGAAAATATTTTCGTCGAGATTTTCTTTAGGTTAAAATAATACTTTTGAAATTCCGGGCCCGGGCCGGGCCTGTTGAAATTTTCAAGGCCCGGGCCCGGTAGCAAAAATTTTGTCATTTTGAGCCAAAATTCGAGCTCTCAATTCAATTTTCTCCATTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTAACGAATTGTCCATACTTTTCAACCGACCGAAAAAAAACCAACGAAAAATTATTTTTTCTAAAAATTTACAGTATCCAGAGCTCCGAAAATATTTTCGTCGAGATTTTCTTTAGGTTAAAATAATACTTKTGAAATTCCGGGCCCGGGCCGGGCCTGTTGAAATTTTCAAGGCCCGGGCCCGGTAGCAAAAATTTTGTCATTTTGAGCCAAAATTCGAGCTCTCAATTCAATTTTCTCCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31450</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>416595</contig_pos>
        <strand>+</strand>
        <context>GTTTCATTCA[A/C]ACAGGATCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGATTTACTATATATCACTTCATACAATTTCTTTTTTCTTGTTTCATTCA</left_flank>
        <right_flank>ACAGGATCATGTTTTTCTTTAATTCTTCCTATTGTTTTCCGGAAGCGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCTTCGCTTACTATTCTTAATATTTTGAGCCTTCTCCTGCAACAGTTCTTCTTCTCCTTACCGAATTCCTACAACGGGTTTATATACGAAAGTTTTGCTTCTACTTTATATTTAACCACTGCCGGTTTCTGTTCCATAACTTGCATCCCGTTGGTGTCCAACTCTCCGTCGGCATCCAATTTGTGTGCTCGTGTATGTTTTTTTATTCGAGAAGCTGCTCAACGACATTTTGGCACACTCTTTTTTTCTCGTCTGGGTGCTTTATTATTTATTCCCGGTTCAAGCACGGCTATGCTGCTCCCTGAATTTCAAGGGACACAATTGAGTGACGTCGCTCGAAAAGATACACCTTCGGTTGCCATATACAAGGATTAATAACCTATTCTCTAGTTTATATTATCCTGATCTCATCTTATGTGTTAGAGAAGTACCACGGTTGTTCTTTGGAGATTTACTATATATCACTTCATACAATTTCTTTTTTCTTGTTTCATTCAAACAGGATCATGTTTTTCTTTAATTCTTCCTATTGTTTTCCGGAAGCGAAAGTTGATTTAAATCTGATCGTTTTTGCTTCTGTTCCGTTTCAAATTCACTAAGATCCAGTTCGTTTAAGTAAAAAAAGGATCCGCTAAATTTTTTGGGATTTAGATCCGACTTCAATTTCTGGTTTTTTACATATTGCTTTCGTGGTTTCAGTACTAGAGACTGATCATATGCTTTATTTTGGTTTTTTTTGAATTAGATACTACAAAAAGACGTCTTTTTATTTTGATTTATGTCCGAACCGACTGATTCCAGTGGTAACGTTCATGGCAATTAAACATAATATATAGAAACGAGACACAGAGCATCAGAAGAGACCAAGAGCGGCAACTTGAAAGATTCTAAACGAACACACTCCGATTCTTCTGTCCATCACTATATCGCAGTCGCCGATGAGTTATTTTGAATTGAGGCGCCCGCCGCCGCGCGAGGATTGGTCTCCAGTGCTTTCT</canonical>
            <polymorphic>TGGCTTCGCTTACTATTCTTAATATTTTGAGCCTTCTCCTGCAACAGTTCTTCTTCTCCTTACCGAATTCCTACAACGGGTTTATATACGAAAGTTTTGCTTCTACTTTATATTTAACCACTGCCGGTTTCTGTTCCATAACTTGCATCCCGTTGGTGTCCAACTCTCCGTCGGCATCCAATTTGTGTGCTCGTGTATGTTTTTTTATTCGAGAAGCTGCTCAACGACATTTTGGCACACTCTTTTTTTCTCGTCTGGGTGCTTTATTATTTATTCCCGGTTCAAGCACGGCTATGCTGCTCCCTGAATTTCAAGGGACACAATTGAGTGACGTCGCTCGAAAAGATACACCTTCGGTTGCCATATACAAGGATTAATAACCTATTCTCTAGTTTATATTATCCTGATCTCATCTTATGTGTTAGAGAAGTACCACGGTTGTTCTTTGGAGATTTACTATATATCACTTCATACAATTTCTTTTTTCTTGTTTCATTCAMACAGGATCATGTTTTTCTTTAATTCTTCCTATTGTTTTCCGGAAGCGAAAGTTGATTTAAATCTGATCGTTTTTGCTTCTGTTCCGTTTCAAATTCACTAAGATCCAGTTCGTTTAAGTAAAAAAAGGATCCGCTAAATTTTTTGGGATTTAGATCCGACTTCAATTTCTGGTTTTTTACATATTGCTTTCGTGGTTTCAGTACTAGAGACTGATCATATGCTTTATTTTGGTTTTTTTTGAATTAGATACTACAAAAAGACGTCTTTTTATTTTGATTTATGTCCGAACCGACTGATTCCAGTGGTAACGTTCATGGCAATTAAACATAATATATAGAAACGAGACACAGAGCATCAGAAGAGACCAAGAGCGGCAACTTGAAAGATTCTAAACGAACACACTCCGATTCTTCTGTCCATCACTATATCGCAGTCGCCGATGAGTTATTTTGAATTGAGGCGCCCGCCGCCGCGCGAGGATTGGTCTCCAGTGCTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGCCATATACAAGGATTAATAAC</pcr_primer_p1>
		<pcr_primer_p2>CTGGATCTTAGTGAATTTGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTGCCATATACAAGGATTAATAACCTATTCTCTAGTTTATATTATCCTGATCTCATCTTATGTGTTAGAGAAGTACCACGGTTGTTCTTTGGAGATTTACTATATATCACTTCATACAATTTCTTTTTTCTTGTTTCATTCAAACAGGATCATGTTTTTCTTTAATTCTTCCTATTGTTTTCCGGAAGCGAAAGTTGATTTAAATCTGATCGTTTTTGCTTCTGTTCCGTTTCAAATTCACTAAGATCCAG</canonical_amplicon>
		<polymorphic_amplicon>TTGCCATATACAAGGATTAATAACCTATTCTCTAGTTTATATTATCCTGATCTCATCTTATGTGTTAGAGAAGTACCACGGTTGTTCTTTGGAGATTTACTATATATCACTTCATACAATTTCTTTTTTCTTGTTTCATTCAMACAGGATCATGTTTTTCTTTAATTCTTCCTATTGTTTTCCGGAAGCGAAAGTTGATTTAAATCTGATCGTTTTTGCTTCTGTTCCGTTTCAAATTCACTAAGATCCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31451</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>416608</contig_pos>
        <strand>+</strand>
        <context>AGGATCATGT[C/T]TTTCTTYAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCACTTCATACAATTTCTTTTTTCTTGTTTCATTCAAACAGGATCATGT</left_flank>
        <right_flank>TTTCTTTAATTCTTCCTATTGTTTTCCGGAAGCGAAAGTTGATTTAAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTCTTAATATTTTGAGCCTTCTCCTGCAACAGTTCTTCTTCTCCTTACCGAATTCCTACAACGGGTTTATATACGAAAGTTTTGCTTCTACTTTATATTTAACCACTGCCGGTTTCTGTTCCATAACTTGCATCCCGTTGGTGTCCAACTCTCCGTCGGCATCCAATTTGTGTGCTCGTGTATGTTTTTTTATTCGAGAAGCTGCTCAACGACATTTTGGCACACTCTTTTTTTCTCGTCTGGGTGCTTTATTATTTATTCCCGGTTCAAGCACGGCTATGCTGCTCCCTGAATTTCAAGGGACACAATTGAGTGACGTCGCTCGAAAAGATACACCTTCGGTTGCCATATACAAGGATTAATAACCTATTCTCTAGTTTATATTATCCTGATCTCATCTTATGTGTTAGAGAAGTACCACGGTTGTTCTTTGGAGATTTACTATATATCACTTCATACAATTTCTTTTTTCTTGTTTCATTCAAACAGGATCATGTTTTTCTTTAATTCTTCCTATTGTTTTCCGGAAGCGAAAGTTGATTTAAATCTGATCGTTTTTGCTTCTGTTCCGTTTCAAATTCACTAAGATCCAGTTCGTTTAAGTAAAAAAAGGATCCGCTAAATTTTTTGGGATTTAGATCCGACTTCAATTTCTGGTTTTTTACATATTGCTTTCGTGGTTTCAGTACTAGAGACTGATCATATGCTTTATTTTGGTTTTTTTTGAATTAGATACTACAAAAAGACGTCTTTTTATTTTGATTTATGTCCGAACCGACTGATTCCAGTGGTAACGTTCATGGCAATTAAACATAATATATAGAAACGAGACACAGAGCATCAGAAGAGACCAAGAGCGGCAACTTGAAAGATTCTAAACGAACACACTCCGATTCTTCTGTCCATCACTATATCGCAGTCGCCGATGAGTTATTTTGAATTGAGGCGCCCGCCGCCGCGCGAGGATTGGTCTCCAGTGCTTTCTTCCTTCCAACCAC</canonical>
            <polymorphic>TATTCTTAATATTTTGAGCCTTCTCCTGCAACAGTTCTTCTTCTCCTTACCGAATTCCTACAACGGGTTTATATACGAAAGTTTTGCTTCTACTTTATATTTAACCACTGCCGGTTTCTGTTCCATAACTTGCATCCCGTTGGTGTCCAACTCTCCGTCGGCATCCAATTTGTGTGCTCGTGTATGTTTTTTTATTCGAGAAGCTGCTCAACGACATTTTGGCACACTCTTTTTTTCTCGTCTGGGTGCTTTATTATTTATTCCCGGTTCAAGCACGGCTATGCTGCTCCCTGAATTTCAAGGGACACAATTGAGTGACGTCGCTCGAAAAGATACACCTTCGGTTGCCATATACAAGGATTAATAACCTATTCTCTAGTTTATATTATCCTGATCTCATCTTATGTGTTAGAGAAGTACCACGGTTGTTCTTTGGAGATTTACTATATATCACTTCATACAATTTCTTTTTTCTTGTTTCATTCAAACAGGATCATGTYTTTCTTTAATTCTTCCTATTGTTTTCCGGAAGCGAAAGTTGATTTAAATCTGATCGTTTTTGCTTCTGTTCCGTTTCAAATTCACTAAGATCCAGTTCGTTTAAGTAAAAAAAGGATCCGCTAAATTTTTTGGGATTTAGATCCGACTTCAATTTCTGGTTTTTTACATATTGCTTTCGTGGTTTCAGTACTAGAGACTGATCATATGCTTTATTTTGGTTTTTTTTGAATTAGATACTACAAAAAGACGTCTTTTTATTTTGATTTATGTCCGAACCGACTGATTCCAGTGGTAACGTTCATGGCAATTAAACATAATATATAGAAACGAGACACAGAGCATCAGAAGAGACCAAGAGCGGCAACTTGAAAGATTCTAAACGAACACACTCCGATTCTTCTGTCCATCACTATATCGCAGTCGCCGATGAGTTATTTTGAATTGAGGCGCCCGCCGCCGCGCGAGGATTGGTCTCCAGTGCTTTCTTCCTTCCAACCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGCCATATACAAGGATTAATAAC</pcr_primer_p1>
		<pcr_primer_p2>CTGGATCTTAGTGAATTTGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTGCCATATACAAGGATTAATAACCTATTCTCTAGTTTATATTATCCTGATCTCATCTTATGTGTTAGAGAAGTACCACGGTTGTTCTTTGGAGATTTACTATATATCACTTCATACAATTTCTTTTTTCTTGTTTCATTCAAACAGGATCATGTTTTTCTTTAATTCTTCCTATTGTTTTCCGGAAGCGAAAGTTGATTTAAATCTGATCGTTTTTGCTTCTGTTCCGTTTCAAATTCACTAAGATCCAG</canonical_amplicon>
		<polymorphic_amplicon>TTGCCATATACAAGGATTAATAACCTATTCTCTAGTTTATATTATCCTGATCTCATCTTATGTGTTAGAGAAGTACCACGGTTGTTCTTTGGAGATTTACTATATATCACTTCATACAATTTCTTTTTTCTTGTTTCATTCAAACAGGATCATGTYTTTCTTTAATTCTTCCTATTGTTTTCCGGAAGCGAAAGTTGATTTAAATCTGATCGTTTTTGCTTCTGTTCCGTTTCAAATTCACTAAGATCCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31452</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>416615</contig_pos>
        <strand>+</strand>
        <context>TGTYTTTCTT[C/T]AATTCTTCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATACAATTTCTTTTTTCTTGTTTCATTCAAACAGGATCATGTTTTTCTT</left_flank>
        <right_flank>AATTCTTCCTATTGTTTTCCGGAAGCGAAAGTTGATTTAAATCTGATCGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATATTTTGAGCCTTCTCCTGCAACAGTTCTTCTTCTCCTTACCGAATTCCTACAACGGGTTTATATACGAAAGTTTTGCTTCTACTTTATATTTAACCACTGCCGGTTTCTGTTCCATAACTTGCATCCCGTTGGTGTCCAACTCTCCGTCGGCATCCAATTTGTGTGCTCGTGTATGTTTTTTTATTCGAGAAGCTGCTCAACGACATTTTGGCACACTCTTTTTTTCTCGTCTGGGTGCTTTATTATTTATTCCCGGTTCAAGCACGGCTATGCTGCTCCCTGAATTTCAAGGGACACAATTGAGTGACGTCGCTCGAAAAGATACACCTTCGGTTGCCATATACAAGGATTAATAACCTATTCTCTAGTTTATATTATCCTGATCTCATCTTATGTGTTAGAGAAGTACCACGGTTGTTCTTTGGAGATTTACTATATATCACTTCATACAATTTCTTTTTTCTTGTTTCATTCAAACAGGATCATGTTTTTCTTTAATTCTTCCTATTGTTTTCCGGAAGCGAAAGTTGATTTAAATCTGATCGTTTTTGCTTCTGTTCCGTTTCAAATTCACTAAGATCCAGTTCGTTTAAGTAAAAAAAGGATCCGCTAAATTTTTTGGGATTTAGATCCGACTTCAATTTCTGGTTTTTTACATATTGCTTTCGTGGTTTCAGTACTAGAGACTGATCATATGCTTTATTTTGGTTTTTTTTGAATTAGATACTACAAAAAGACGTCTTTTTATTTTGATTTATGTCCGAACCGACTGATTCCAGTGGTAACGTTCATGGCAATTAAACATAATATATAGAAACGAGACACAGAGCATCAGAAGAGACCAAGAGCGGCAACTTGAAAGATTCTAAACGAACACACTCCGATTCTTCTGTCCATCACTATATCGCAGTCGCCGATGAGTTATTTTGAATTGAGGCGCCCGCCGCCGCGCGAGGATTGGTCTCCAGTGCTTTCTTCCTTCCAACCACCATATCT</canonical>
            <polymorphic>AATATTTTGAGCCTTCTCCTGCAACAGTTCTTCTTCTCCTTACCGAATTCCTACAACGGGTTTATATACGAAAGTTTTGCTTCTACTTTATATTTAACCACTGCCGGTTTCTGTTCCATAACTTGCATCCCGTTGGTGTCCAACTCTCCGTCGGCATCCAATTTGTGTGCTCGTGTATGTTTTTTTATTCGAGAAGCTGCTCAACGACATTTTGGCACACTCTTTTTTTCTCGTCTGGGTGCTTTATTATTTATTCCCGGTTCAAGCACGGCTATGCTGCTCCCTGAATTTCAAGGGACACAATTGAGTGACGTCGCTCGAAAAGATACACCTTCGGTTGCCATATACAAGGATTAATAACCTATTCTCTAGTTTATATTATCCTGATCTCATCTTATGTGTTAGAGAAGTACCACGGTTGTTCTTTGGAGATTTACTATATATCACTTCATACAATTTCTTTTTTCTTGTTTCATTCAAACAGGATCATGTTTTTCTTYAATTCTTCCTATTGTTTTCCGGAAGCGAAAGTTGATTTAAATCTGATCGTTTTTGCTTCTGTTCCGTTTCAAATTCACTAAGATCCAGTTCGTTTAAGTAAAAAAAGGATCCGCTAAATTTTTTGGGATTTAGATCCGACTTCAATTTCTGGTTTTTTACATATTGCTTTCGTGGTTTCAGTACTAGAGACTGATCATATGCTTTATTTTGGTTTTTTTTGAATTAGATACTACAAAAAGACGTCTTTTTATTTTGATTTATGTCCGAACCGACTGATTCCAGTGGTAACGTTCATGGCAATTAAACATAATATATAGAAACGAGACACAGAGCATCAGAAGAGACCAAGAGCGGCAACTTGAAAGATTCTAAACGAACACACTCCGATTCTTCTGTCCATCACTATATCGCAGTCGCCGATGAGTTATTTTGAATTGAGGCGCCCGCCGCCGCGCGAGGATTGGTCTCCAGTGCTTTCTTCCTTCCAACCACCATATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>260 208 198 145 94 57 38</canonical_bands>
                <polymorphic_bands>260 208 198 183 94 57</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGCCATATACAAGGATTAATAAC</pcr_primer_p1>
		<pcr_primer_p2>CTGGATCTTAGTGAATTTGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTGCCATATACAAGGATTAATAACCTATTCTCTAGTTTATATTATCCTGATCTCATCTTATGTGTTAGAGAAGTACCACGGTTGTTCTTTGGAGATTTACTATATATCACTTCATACAATTTCTTTTTTCTTGTTTCATTCAAACAGGATCATGTTTTTCTTTAATTCTTCCTATTGTTTTCCGGAAGCGAAAGTTGATTTAAATCTGATCGTTTTTGCTTCTGTTCCGTTTCAAATTCACTAAGATCCAG</canonical_amplicon>
		<polymorphic_amplicon>TTGCCATATACAAGGATTAATAACCTATTCTCTAGTTTATATTATCCTGATCTCATCTTATGTGTTAGAGAAGTACCACGGTTGTTCTTTGGAGATTTACTATATATCACTTCATACAATTTCTTTTTTCTTGTTTCATTCAAACAGGATCATGTTTTTCTTYAATTCTTCCTATTGTTTTCCGGAAGCGAAAGTTGATTTAAATCTGATCGTTTTTGCTTCTGTTCCGTTTCAAATTCACTAAGATCCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31466</snp_id>
        <super_contig>c006400953.Contig1</super_contig>
        <contig_pos>507270</contig_pos>
        <strand>+</strand>
        <context>CATATTAACT[C/T]CCAGATATCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCCGGAAGGTTTCCTAATAATTCTGATCTTCTGACCCAACATATTAACT</left_flank>
        <right_flank>CCAGATATCAAAGATATCCACTTGGTGATGGAAAATCGCAAAAGTTTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACAATGATGATTATCCTTTTGCCTCCCCCTTAGTTTTTTATATGCATTTTGATTTTGAATCCTGCAAGATTTTGATATCAGTACCCTGATTTTTGTATATTCGCGATTTTGGGATGTCATTTTTCTTACCCTTCGTAGTGTTTTCAGTTCGGAGCATCGAGACTCAACTTCCAGCCAAGCACTATATTCCTACTTGGATGTCCATTAGGATTGACTTTGATGCAAAGAAAATTAGAAGGATCAGGTAAGAACACAAAAAAACAACGAAACTATGAAAAAAAAAATAAAATTCAATTTTCTAGAAATCGATAGTTTGGATTCATGCCAACTTTTCAATTTATACTATCCACTGGATCCATGTGGTGCTCGGATAGAGCCGGTTCTGGATTCTCAATTGGCTTGTGTTCCACCTTATAATGTTCCAAAGTTAGTAGATATTAGTTTTGAATCCGGAAGGTTTCCTAATAATTCTGATCTTCTGACCCAACATATTAACTTCCAGATATCAAAGATATCCACTTGGTGATGGAAAATCGCAAAAGTTTGAACCCTCAATCGATACATCGCAAATGTGGGGAAGTAAAAGAATCGACAATCTTCTCTACTGCCCGAACTCAATGGTTGCTCTTCCATCTTCGGCTCTTCCCAATATTCTTCATGCATCTTATTGGGAATCATGCGACGTGGCTTCTTTCCTTCTTCGACAATTCGTTCGAGGAGAGGAGTGTGTGATGCCCACACTTTCTTCGAGTATGAATAACATTCCATTGAATATTGATCTACCTACAATGCACTGGAAACGAAGGAGGACTCGGTTTAAGGTACAATATTATTCTTGTGCAAAAAATTGGAGTCGTGGCCGAATTTCCACACAAGTTAGGCCACCGTATTTTAAGGAGAATTTTCGAAAACACAGCCGGCAAACGAGTGCTACCGTAACCCAACAATAAATATTTTCGCAAAATTTTTGTCTTATTTGTTTCCTTTTTATAGATTTT</canonical>
            <polymorphic>TGACAATGATGATTATCCTTTTGCCTCCCCCTTAGTTTTTTATATGCATTTTGATTTTGAATCCTGCAAGATTTTGATATCAGTACCCTGATTTTTGTATATTCGCGATTTTGGGATGTCATTTTTCTTACCCTTCGTAGTGTTTTCAGTTCGGAGCATCGAGACTCAACTTCCAGCCAAGCACTATATTCCTACTTGGATGTCCATTAGGATTGACTTTGATGCAAAGAAAATTAGAAGGATCAGGTAAGAACACAAAAAAACAACGAAACTATGAAAAAAAAAATAAAATTCAATTTTCTAGAAATCGATAGTTTGGATTCATGCCAACTTTTCAATTTATACTATCCACTGGATCCATGTGGTGCTCGGATAGAGCCGGTTCTGGATTCTCAATTGGCTTGTGTTCCACCTTATAATGTTCCAAAGTTAGTAGATATTAGTTTTGAATCCGGAAGGTTTCCTAATAATTCTGATCTTCTGACCCAACATATTAACTYCCAGATATCAAAGATATCCACTTGGTGATGGAAAATCGCAAAAGTTTGAACCCTCAATCGATACATCGCAAATGTGGGGAAGTAAAAGAATCGACAATCTTCTCTACTGCCCGAACTCAATGGTTGCTCTTCCATCTTCGGCTCTTCCCAATATTCTTCATGCATCTTATTGGGAATCATGCGACGTGGCTTCTTTCCTTCTTCGACAATTCGTTCGAGGAGAGGAGTGTGTGATGCCCACACTTTCTTCGAGTATGAATAACATTCCATTGAATATTGATCTACCTACAATGCACTGGAAACGAAGGAGGACTCGGTTTAAGGTACAATATTATTCTTGTGCAAAAAATTGGAGTCGTGGCCGAATTTCCACACAAGTTAGGCCACCGTATTTTAAGGAGAATTTTCGAAAACACAGCCGGCAAACGAGTGCTACCGTAACCCAACAATAAATATTTTCGCAAAATTTTTGTCTTATTTGTTTCCTTTTTATAGATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>499 141 104 84 67 56 49</canonical_bands>
                <polymorphic_bands>548 141 104 84 67 56</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGCCAACTTTTCAATTTATAC</pcr_primer_p1>
		<pcr_primer_p2>TATCGATTGAGGGTTCAAACT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CATGCCAACTTTTCAATTTATACTATCCACTGGATCCATGTGGTGCTCGGATAGAGCCGGTTCTGGATTCTCAATTGGCTTGTGTTCCACCTTATAATGTTCCAAAGTTAGTAGATATTAGTTTTGAATCCGGAAGGTTTCCTAATAATTCTGATCTTCTGACCCAACATATTAACTTCCAGATATCAAAGATATCCACTTGGTGATGGAAAATCGCAAAAGTTTGAACCCTCAATCGATA</canonical_amplicon>
		<polymorphic_amplicon>CATGCCAACTTTTCAATTTATACTATCCACTGGATCCATGTGGTGCTCGGATAGAGCCGGTTCTGGATTCTCAATTGGCTTGTGTTCCACCTTATAATGTTCCAAAGTTAGTAGATATTAGTTTTGAATCCGGAAGGTTTCCTAATAATTCTGATCTTCTGACCCAACATATTAACTYCCAGATATCAAAGATATCCACTTGGTGATGGAAAATCGCAAAAGTTTGAACCCTCAATCGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31467</snp_id>
        <super_contig>c006400955.Contig1</super_contig>
        <contig_pos>30901</contig_pos>
        <strand></strand>
        <context>ctcgctgatt[T/C]ctattatatc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGACAAGACACAACTCTCTAAATAGTATTATTTTTTAGTACTCGCTGATT</left_flank>
        <right_flank>CTATTATATCTAATTCAGTTGATTCGAAAATATTGATTCAAAAAGAAACC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTGAGGTCTCAAAAGCCATAATCGTTTTTTCCAAGAATAGGCGTTCTATCTTAATTACCGCAAAACCTCCTAACTTTAAACTTTGAGCTAATTTATCTCGGTTCTTGTCAAAGATATGTGAAAGTTATCAACTGATAAACTCTTTATCATAACATCAGAAATGTTTTGATAGTTGATACATTATTGGTATCTTTCACAGGAGGCGAGATAAATCAGCTCCAACCATACTTGCGACCGGGCCTTCGCGAGGTCTGATATAGTTACTTTTAGAGTCAAAAATTGTGGACCAAATAAATTAGATATGATAGAACTCAAAGAGTGCTACAAAATGATATTATTTGAAAAACTGTGTCTTGTTTATGAACAAAGTTACAAACAAAGAACAGAGGCCCGGCCCGTACCCACGCGACAAGGTCCGGCCACCTTATGCCTTGTAACTTTGTTCATAGACAAGACACAACTCTCTAAATAGTATTATTTTTTAGTACTCGCTGATTTCTATTATATCTAATTCAGTTGATTCGAAAATATTGATTCAAAAAGAAACCATGGCAAGGCCCACGAAGGGCCCGGCCAAGGCGCGGTCGCAAGTATGGCTCAAACATTATAGTGTGGGGGCCCTTCTATTACAGGTTTTACGGTATTTTTCTTATCTTTATTATCTCGGTTCCCAATGAAAGTGTTAACATGGAATCAATTAATGAAATAAACAAGATGAAATTTCCAATACTTTATTAGTTGTACATTTTTTCATGTCTCTGACAGGAACTACAATAATTTGGTTTAGGTAACCGAAATCCTCGGTTCCTGTTCATTTTTTGATTCGATAATGGGCACTTCTTTTTTCAAATCCTAATTATCTCGTTCCTCCATAGAAGTGTTGAATTTACTATTATTAGATAAACGCTTCTGGTTGTGACTTATGCAAATTTTCTTTAGTTTGTACAAATCGAATTTGTGCAATGAGTTATTGCTCAACCAGCTGAAACACCTACTCA</canonical>
            <polymorphic>AGGTGAGGTCTCAAAAGCCATAATCGTTTTTTCCAAGAATAGGCGTTCTATCTTAATTACCGCAAAACCTCCTAACTTTAAACTTTGAGCTAATTTATCTCGGTTCTTGTCAAAGATATGTGAAAGTTATCAACTGATAAACTCTTTATCATAACATCAGAAATGTTTTGATAGTTGATACATTATTGGTATCTTTCACAGGAGGCGAGATAAATCAGCTCCAACCATACTTGCGACCGGGCCTTCGCGAGGTCTGATATAGTTACTTTTAGAGTCAAAAATTGTGGACCAAATAAATTAGATATGATAGAACTCAAAGAGTGCTACAAAATGATATTATTTGAAAAACTGTGTCTTGTTTATGAACAAAGTTACAAACAAAGAACAGAGGCCCGGCCCGTACCCACGCGACAAGGTCCGGCCACCTTATGCCTTGTAACTTTGTTCATAGACAAGACACAACTCTCTAAATAGTATTATTTTTTAGTACTCGCTGATTYCTATTATATCTAATTCAGTTGATTCGAAAATATTGATTCAAAAAGAAACCATGGCAAGGCCCACGAAGGGCCCGGCCAAGGCGCGGTCGCAAGTATGGCTCAAACATTATAGTGTGGGGGCCCTTCTATTACAGGTTTTACGGTATTTTTCTTATCTTTATTATCTCGGTTCCCAATGAAAGTGTTAACATGGAATCAATTAATGAAATAAACAAGATGAAATTTCCAATACTTTATTAGTTGTACATTTTTTCATGTCTCTGACAGGAACTACAATAATTTGGTTTAGGTAACCGAAATCCTCGGTTCCTGTTCATTTTTTGATTCGATAATGGGCACTTCTTTTTTCAAATCCTAATTATCTCGTTCCTCCATAGAAGTGTTGAATTTACTATTATTAGATAAACGCTTCTGGTTGTGACTTATGCAAATTTTCTTTAGTTTGTACAAATCGAATTTGTGCAATGAGTTATTGCTCAACCAGCTGAAACACCTACTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGAATAGGCGTTCTATCTTAAT</pcr_primer_p1>
		<pcr_primer_p2>CGAGATAATTAGGATTTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>833</pcr_amplicon_size>
		<canonical_amplicon>CAAGAATAGGCGTTCTATCTTAATTACCGCAAAACCTCCTAACTTTAAACTTTGAGCTAATTTATCTCGGTTCTTGTCAAAGATATGTGAAAGTTATCAACTGATAAACTCTTTATCATAACATCAGAAATGTTTTGATAGTTGATACATTATTGGTATCTTTCACAGGAGGCGAGATAAATCAGCTCCAACCATACTTGCGACCGGGCCTTCGCGAGGTCTGATATAGTTACTTTTAGAGTCAAAAATTGTGGACCAAATAAATTAGATATGATAGAACTCAAAGAGTGCTACAAAATGATATTATTTGAAAAACTGTGTCTTGTTTATGAACAAAGTTACAAACAAAGAACAGAGGCCCGGCCCGTACCCACGCGACAAGGTCCGGCCACCTTATGCCTTGTAACTTTGTTCATAGACAAGACACAACTCTCTAAATAGTATTATTTTTTAGTACTCGCTGATTTCTATTATATCTAATTCAGTTGATTCGAAAATATTGATTCAAAAAGAAACCATGGCAAGGCCCACGAAGGGCCCGGCCAAGGCGCGGTCGCAAGTATGGCTCAAACATTATAGTGTGGGGGCCCTTCTATTACAGGTTTTACGGTATTTTTCTTATCTTTATTATCTCGGTTCCCAATGAAAGTGTTAACATGGAATCAATTAATGAAATAAACAAGATGAAATTTCCAATACTTTATTAGTTGTACATTTTTTCATGTCTCTGACAGGAACTACAATAATTTGGTTTAGGTAACCGAAATCCTCGGTTCCTGTTCATTTTTTGATTCGATAATGGGCACTTCTTTTTTCAAATCCTAATTATCTCG</canonical_amplicon>
		<polymorphic_amplicon>CAAGAATAGGCGTTCTATCTTAATTACCGCAAAACCTCCTAACTTTAAACTTTGAGCTAATTTATCTCGGTTCTTGTCAAAGATATGTGAAAGTTATCAACTGATAAACTCTTTATCATAACATCAGAAATGTTTTGATAGTTGATACATTATTGGTATCTTTCACAGGAGGCGAGATAAATCAGCTCCAACCATACTTGCGACCGGGCCTTCGCGAGGTCTGATATAGTTACTTTTAGAGTCAAAAATTGTGGACCAAATAAATTAGATATGATAGAACTCAAAGAGTGCTACAAAATGATATTATTTGAAAAACTGTGTCTTGTTTATGAACAAAGTTACAAACAAAGAACAGAGGCCCGGCCCGTACCCACGCGACAAGGTCCGGCCACCTTATGCCTTGTAACTTTGTTCATAGACAAGACACAACTCTCTAAATAGTATTATTTTTTAGTACTCGCTGATTYCTATTATATCTAATTCAGTTGATTCGAAAATATTGATTCAAAAAGAAACCATGGCAAGGCCCACGAAGGGCCCGGCCAAGGCGCGGTCGCAAGTATGGCTCAAACATTATAGTGTGGGGGCCCTTCTATTACAGGTTTTACGGTATTTTTCTTATCTTTATTATCTCGGTTCCCAATGAAAGTGTTAACATGGAATCAATTAATGAAATAAACAAGATGAAATTTCCAATACTTTATTAGTTGTACATTTTTTCATGTCTCTGACAGGAACTACAATAATTTGGTTTAGGTAACCGAAATCCTCGGTTCCTGTTCATTTTTTGATTCGATAATGGGCACTTCTTTTTTCAAATCCTAATTATCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31468</snp_id>
        <super_contig>c006400955.Contig1</super_contig>
        <contig_pos>31111</contig_pos>
        <strand></strand>
        <context>ttaatgaaat[A/G]aacaagatga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTATCTCGGTTCCCAATGAAAGTGTTAACATGGAATCAATTAATGAAAT</left_flank>
        <right_flank>AACAAGATGAAATTTCCAATACTTTATTAGTTGTACATTTTTTCATGTCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATCAGCTCCAACCATACTTGCGACCGGGCCTTCGCGAGGTCTGATATAGTTACTTTTAGAGTCAAAAATTGTGGACCAAATAAATTAGATATGATAGAACTCAAAGAGTGCTACAAAATGATATTATTTGAAAAACTGTGTCTTGTTTATGAACAAAGTTACAAACAAAGAACAGAGGCCCGGCCCGTACCCACGCGACAAGGTCCGGCCACCTTATGCCTTGTAACTTTGTTCATAGACAAGACACAACTCTCTAAATAGTATTATTTTTTAGTACTCGCTGATTTCTATTATATCTAATTCAGTTGATTCGAAAATATTGATTCAAAAAGAAACCATGGCAAGGCCCACGAAGGGCCCGGCCAAGGCGCGGTCGCAAGTATGGCTCAAACATTATAGTGTGGGGGCCCTTCTATTACAGGTTTTACGGTATTTTTCTTATCTTTATTATCTCGGTTCCCAATGAAAGTGTTAACATGGAATCAATTAATGAAATAAACAAGATGAAATTTCCAATACTTTATTAGTTGTACATTTTTTCATGTCTCTGACAGGAACTACAATAATTTGGTTTAGGTAACCGAAATCCTCGGTTCCTGTTCATTTTTTGATTCGATAATGGGCACTTCTTTTTTCAAATCCTAATTATCTCGTTCCTCCATAGAAGTGTTGAATTTACTATTATTAGATAAACGCTTCTGGTTGTGACTTATGCAAATTTTCTTTAGTTTGTACAAATCGAATTTGTGCAATGAGTTATTGCTCAACCAGCTGAAACACCTACTCAATTTAGCTATATTATCTGTAATTTAATTAGACACGTCATCTTCTAGTCATGTAAGGAAAACAAATCTTCGGAAGAGTATGTTTTTTGTGGGAAAAAGGGAAACATCAAATGAAGGGGTATCGTAAGCACTCTTATAGAATGTCCCTCAAACTGTCAGTCAACTTTGAACCCATATAGCGCATTTCATGTTGAAGATATCCACAAATGGTC</canonical>
            <polymorphic>TAAATCAGCTCCAACCATACTTGCGACCGGGCCTTCGCGAGGTCTGATATAGTTACTTTTAGAGTCAAAAATTGTGGACCAAATAAATTAGATATGATAGAACTCAAAGAGTGCTACAAAATGATATTATTTGAAAAACTGTGTCTTGTTTATGAACAAAGTTACAAACAAAGAACAGAGGCCCGGCCCGTACCCACGCGACAAGGTCCGGCCACCTTATGCCTTGTAACTTTGTTCATAGACAAGACACAACTCTCTAAATAGTATTATTTTTTAGTACTCGCTGATTTCTATTATATCTAATTCAGTTGATTCGAAAATATTGATTCAAAAAGAAACCATGGCAAGGCCCACGAAGGGCCCGGCCAAGGCGCGGTCGCAAGTATGGCTCAAACATTATAGTGTGGGGGCCCTTCTATTACAGGTTTTACGGTATTTTTCTTATCTTTATTATCTCGGTTCCCAATGAAAGTGTTAACATGGAATCAATTAATGAAATRAACAAGATGAAATTTCCAATACTTTATTAGTTGTACATTTTTTCATGTCTCTGACAGGAACTACAATAATTTGGTTTAGGTAACCGAAATCCTCGGTTCCTGTTCATTTTTTGATTCGATAATGGGCACTTCTTTTTTCAAATCCTAATTATCTCGTTCCTCCATAGAAGTGTTGAATTTACTATTATTAGATAAACGCTTCTGGTTGTGACTTATGCAAATTTTCTTTAGTTTGTACAAATCGAATTTGTGCAATGAGTTATTGCTCAACCAGCTGAAACACCTACTCAATTTAGCTATATTATCTGTAATTTAATTAGACACGTCATCTTCTAGTCATGTAAGGAAAACAAATCTTCGGAAGAGTATGTTTTTTGTGGGAAAAAGGGAAACATCAAATGAAGGGGTATCGTAAGCACTCTTATAGAATGTCCCTCAAACTGTCAGTCAACTTTGAACCCATATAGCGCATTTCATGTTGAAGATATCCACAAATGGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGAATAGGCGTTCTATCTTAAT</pcr_primer_p1>
		<pcr_primer_p2>CGAGATAATTAGGATTTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>833</pcr_amplicon_size>
		<canonical_amplicon>TAAACAAGATGAAATTTCCAATACTTTATTAGTTGTACATTTTTTCATGTCTCTGACAGGAACTACAATAATTTGGTTTAGGTAACCGAAATCCTCGGTTCCTGTTCATTTTTTGATTCGATAATGGGCACTTCTTTTTTCAAATCCTAATTATCTCG</canonical_amplicon>
		<polymorphic_amplicon>TRAACAAGATGAAATTTCCAATACTTTATTAGTTGTACATTTTTTCATGTCTCTGACAGGAACTACAATAATTTGGTTTAGGTAACCGAAATCCTCGGTTCCTGTTCATTTTTTGATTCGATAATGGGCACTTCTTTTTTCAAATCCTAATTATCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31469</snp_id>
        <super_contig>c006400955.Contig1</super_contig>
        <contig_pos>54932</contig_pos>
        <strand>+</strand>
        <context>AGGGAAAAAT[C/T]TGTAGAGCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGTAACAGAGGGTTCTATTTTTGTGGATCTGGTAGTGAGAGGGAAAAAT</left_flank>
        <right_flank>TGTAGAGCTAAAAAATGAATTGAAAACTTTATTTATGATTAACACAACCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACAACAACAAACGAGTGCAAATGAGGAAGAGTGGAGCTCCAGAGAGAGAGAGAGAGCCATATAAATTGCACATAGCTTAACTGACCAGAAGGGCGGCCTAATTCCCTCCTCGTCCTTCTGGTGGTGCTCAAGTCTTCTGAAGTCTTAAGCTTCCTCTCTCAGCAATCGAACGCCTCTAATGAATCCGCGAAAAGCGCGCGGAACGTCTAGAGAGTCTGAGAGACGCTGAGCAACCCAATTTAGTCATTGTCCCCCTTCGCAATAAGAGAAAGCTAACCAGTCAGTCAAGCCAAAACAATTGTGAATTCAATTGTGCGGCAAAGGAGGGGGGATGGAATAAGAAAATGAGCAAGAGAGAAAGGACATATGGTGGAGATCACTATCCGAAGGGTATAATCTTAGAATCTTGTTATATGGAGCCATATATAACGTCATCTAATTGAAAAAACGTAACAGAGGGTTCTATTTTTGTGGATCTGGTAGTGAGAGGGAAAAATCTGTAGAGCTAAAAAATGAATTGAAAACTTTATTTATGATTAACACAACCCTGAGAGCCTTTAGCCACATCTAGCCCAAAAACAACTTGAATTGAAATCAACCTAGAGAACTTGATGAGTGACTGTCAGCCACTTCTAGCCCGAATAAGCCAATTCCCAAAAAAACTCTGCCAAGAACCCAAAAAGAGACAACGTGGCGTTTTGAAAAGGGTGACGACTAGGACGGCATTGATGATGACCATACCTAGTGATAAAAACCGTGGGGAAGTGATAAAAATTGATAAGTCAATTATACCAAGAAGAAAGACGCAGACGACACCACAAAACTGTTCGAGAGAAAAAAGACAGAAAGAGAATTGTGTCACTGGTAAATTAATTGACATTTTTGCCAACACAAAAGACAAACGAACTGAACTACCCCAAAAAAGGAGCGAGGAGAAGAAGAACCGGAAATCAATGGGTAGAGAGAGAGAGAGAGTCGAGTGCTATTGGTTCTCTACT</canonical>
            <polymorphic>CAACAACAACAAACGAGTGCAAATGAGGAAGAGTGGAGCTCCAGAGAGAGAGAGAGAGCCATATAAATTGCACATAGCTTAACTGACCAGAAGGGCGGCCTAATTCCCTCCTCGTCCTTCTGGTGGTGCTCAAGTCTTCTGAAGTCTTAAGCTTCCTCTCTCAGCAATCGAACGCCTCTAATGAATCCGCGAAAAGCGCGCGGAACGTCTAGAGAGTCTGAGAGACGCTGAGCAACCCAATTTAGTCATTGTCCCCCTTCGCAATAAGAGAAAGCTAACCAGTCAGTCAAGCCAAAACAATTGTGAATTCAATTGTGCGGCAAAGGAGGGGGGATGGAATAAGAAAATGAGCAAGAGAGAAAGGACATATGGTGGAGATCACTATCCGAAGGGTATAATCTTAGAATCTTGTTATATGGAGCCATATATAACGTCATCTAATTGAAAAAACGTAACAGAGGGTTCTATTTTTGTGGATCTGGTAGTGAGAGGGAAAAATYTGTAGAGCTAAAAAATGAATTGAAAACTTTATTTATGATTAACACAACCCTGAGAGCCTTTAGCCACATCTAGCCCAAAAACAACTTGAATTGAAATCAACCTAGAGAACTTGATGAGTGACTGTCAGCCACTTCTAGCCCGAATAAGCCAATTCCCAAAAAAACTCTGCCAAGAACCCAAAAAGAGACAACGTGGCGTTTTGAAAAGGGTGACGACTAGGACGGCATTGATGATGACCATACCTAGTGATAAAAACCGTGGGGAAGTGATAAAAATTGATAAGTCAATTATACCAAGAAGAAAGACGCAGACGACACCACAAAACTGTTCGAGAGAAAAAAGACAGAAAGAGAATTGTGTCACTGGTAAATTAATTGACATTTTTGCCAACACAAAAGACAAACGAACTGAACTACCCCAAAAAAGGAGCGAGGAGAAGAAGAACCGGAAATCAATGGGTAGAGAGAGAGAGAGAGTCGAGTGCTATTGGTTCTCTACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCACTATCCGAAGGGTATAAT</pcr_primer_p1>
		<pcr_primer_p2>GACAGTCACTCATCAAGTTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCACTATCCGAAGGGTATAATCTTAGAATCTTGTTATATGGAGCCATATATAACGTCATCTAATTGAAAAAACGTAACAGAGGGTTCTATTTTTGTGGATCTGGTAGTGAGAGGGAAAAATCTGTAGAGCTAAAAAATGAATTGAAAACTTTATTTATGATTAACACAACCCTGAGAGCCTTTAGCCACATCTAGCCCAAAAACAACTTGAATTGAAATCAACCTAGAGAACTTGATGAGTGACTGTC</canonical_amplicon>
		<polymorphic_amplicon>GATCACTATCCGAAGGGTATAATCTTAGAATCTTGTTATATGGAGCCATATATAACGTCATCTAATTGAAAAAACGTAACAGAGGGTTCTATTTTTGTGGATCTGGTAGTGAGAGGGAAAAATYTGTAGAGCTAAAAAATGAATTGAAAACTTTATTTATGATTAACACAACCCTGAGAGCCTTTAGCCACATCTAGCCCAAAAACAACTTGAATTGAAATCAACCTAGAGAACTTGATGAGTGACTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31470</snp_id>
        <super_contig>c006400955.Contig1</super_contig>
        <contig_pos>59120</contig_pos>
        <strand>+</strand>
        <context>TTGCAACGGG[C/T]CGGGYTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTCACCAGGAACATTTTTCAGGTGAAGAGACCAACATACTTGCAACGGG</left_flank>
        <right_flank>CGGGTTTTTTTTCAGAATTTTCAGGGCCCGGCCCGGACCGCGGGCCAGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCAAAAGATTTCAAATTTTGGACAGAAAATGAGCACAACTGCAAAATAAGCCTAATCCGTACCTCTCTAGGGGTGGTTCTCAAGCTAATTACACGAAAAAGCGGGAAAAGAGAGATACACACGACAGATGTCCTTCCTGTCCTCTCGCTCGCTTGGTGCTTATTAATTTTTTTGTCCGTGTCCGTTCGGTTTGGGACATTCAGTCACCATAATAACCTCCAGGCCATATGAGGAGAGATACCCTTTAATCATGGATAGGTTTGGGGGTCATGAGAGAGACAACATATAAGTTTTTAAAAGAGACATTTGAGTAGCCTAACTTTCAAGATTCCTAGGCCATCAAAAGTTTTAGGAAGGCATCCTGCAAAAGGATTCTAGACCATTGATAAGGCCTGGCCTAACTGTTAAGGTTTCTAGGCCAGTCTGACTTCCCAGAATGGATTTTTTCGGTCACCAGGAACATTTTTCAGGTGAAGAGACCAACATACTTGCAACGGGCCGGGTTTTTTTTCAGAATTTTCAGGGCCCGGCCCGGACCGCGGGCCAGGCCCTGATTTTGCAAGTATGGAGATCAACCGATTTTTCACAGAATCCATGAAGAATGTGAATAATAATTCAAAAACCGGTCGAAGTTATTTTACTGCTGTAGCCCATTATTTTTTTCACATAAAAGTTGAACTTTTGCCTTTCCTATAGGTAAAATATGGCCCTAAACACATTTTTTGGAAAAAAAAACAAAATTGAAATTGCCCCAAAAAATTATTTGCGATGGGGGTAAATTTGTGTATTTACTCAAGGTGTTGGTAGGAAACGAGAGAAATGGGAGGAGGAATATTATAAGACGAAGTGAAAATAAAAGACAGATTTCTTTAAAAAGAGAAAACTTTCAGTAAAAAGTTAAGAAAATAGGTAGAAATATCGATTTAAAAATCTCAAAAAGCAATTTTTTGAAAATGACTCATGAATTTTGAAATTGATTTCGAACTAGAGAGAAAATGC</canonical>
            <polymorphic>ACCAAAAGATTTCAAATTTTGGACAGAAAATGAGCACAACTGCAAAATAAGCCTAATCCGTACCTCTCTAGGGGTGGTTCTCAAGCTAATTACACGAAAAAGCGGGAAAAGAGAGATACACACGACAGATGTCCTTCCTGTCCTCTCGCTCGCTTGGTGCTTATTAATTTTTTTGTCCGTGTCCGTTCGGTTTGGGACATTCAGTCACCATAATAACCTCCAGGCCATATGAGGAGAGATACCCTTTAATCATGGATAGGTTTGGGGGTCATGAGAGAGACAACATATAAGTTTTTAAAAGAGACATTTGAGTAGCCTAACTTTCAAGATTCCTAGGCCATCAAAAGTTTTAGGAAGGCATCCTGCAAAAGGATTCTAGACCATTGATAAGGCCTGGCCTAACTGTTAAGGTTTCTAGGCCAGTCTGACTTCCCAGAATGGATTTTTTCGGTCACCAGGAACATTTTTCAGGTGAAGAGACCAACATACTTGCAACGGGYCGGGTTTTTTTTCAGAATTTTCAGGGCCCGGCCCGGACCGCGGGCCAGGCCCTGATTTTGCAAGTATGGAGATCAACCGATTTTTCACAGAATCCATGAAGAATGTGAATAATAATTCAAAAACCGGTCGAAGTTATTTTACTGCTGTAGCCCATTATTTTTTTCACATAAAAGTTGAACTTTTGCCTTTCCTATAGGTAAAATATGGCCCTAAACACATTTTTTGGAAAAAAAAACAAAATTGAAATTGCCCCAAAAAATTATTTGCGATGGGGGTAAATTTGTGTATTTACTCAAGGTGTTGGTAGGAAACGAGAGAAATGGGAGGAGGAATATTATAAGACGAAGTGAAAATAAAAGACAGATTTCTTTAAAAAGAGAAAACTTTCAGTAAAAAGTTAAGAAAATAGGTAGAAATATCGATTTAAAAATCTCAAAAAGCAATTTTTTGAAAATGACTCATGAATTTTGAAATTGATTTCGAACTAGAGAGAAAATGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>454 221 173 62 45 27 13 5</canonical_bands>
                <polymorphic_bands>454 221 173 72 62 13 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>292 224 159 113 80 55 27 22 13 5 5 5</canonical_bands>
                <polymorphic_bands>292 224 159 113 107 55 22 13 5 5 5</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 376 91 28 5</canonical_bands>
                <polymorphic_bands>528 376 91 5</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>292 139 101 91 80 58 55 51 34 27 22 22 13 5 5 5</canonical_bands>
                <polymorphic_bands>292 139 107 101 91 58 55 51 34 22 22 13 5 5 5</polymorphic_bands>
            </assay>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>499 474 27</canonical_bands>
                <polymorphic_bands>526 474</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 290 159 27 7 6 6 5</canonical_bands>
                <polymorphic_bands>527 290 159 7 6 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCACCAGGAACATTTTTCA</pcr_primer_p1>
		<pcr_primer_p2>TATAGGAAAGGCAAAAGTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTCACCAGGAACATTTTTCAGGTGAAGAGACCAACATACTTGCAACGGGCCGGGTTTTTTTTCAGAATTTTCAGGGCCCGGCCCGGACCGCGGGCCAGGCCCTGATTTTGCAAGTATGGAGATCAACCGATTTTTCACAGAATCCATGAAGAATGTGAATAATAATTCAAAAACCGGTCGAAGTTATTTTACTGCTGTAGCCCATTATTTTTTTCACATAAAAGTTGAACTTTTGCCTTTCCTATA</canonical_amplicon>
		<polymorphic_amplicon>GTCACCAGGAACATTTTTCAGGTGAAGAGACCAACATACTTGCAACGGGYCGGGTTTTTTTTCAGAATTTTCAGGGCCCGGCCCGGACCGCGGGCCAGGCCCTGATTTTGCAAGTATGGAGATCAACCGATTTTTCACAGAATCCATGAAGAATGTGAATAATAATTCAAAAACCGGTCGAAGTTATTTTACTGCTGTAGCCCATTATTTTTTTCACATAAAAGTTGAACTTTTGCCTTTCCTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31471</snp_id>
        <super_contig>c006400955.Contig1</super_contig>
        <contig_pos>59125</contig_pos>
        <strand>+</strand>
        <context>ACGGGYCGGG[C/T]TTTTTTTCWG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAGGAACATTTTTCAGGTGAAGAGACCAACATACTTGCAACGGGCCGGG</left_flank>
        <right_flank>TTTTTTTCAGAATTTTCAGGGCCCGGCCCGGACCGCGGGCCAGGCCCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGATTTCAAATTTTGGACAGAAAATGAGCACAACTGCAAAATAAGCCTAATCCGTACCTCTCTAGGGGTGGTTCTCAAGCTAATTACACGAAAAAGCGGGAAAAGAGAGATACACACGACAGATGTCCTTCCTGTCCTCTCGCTCGCTTGGTGCTTATTAATTTTTTTGTCCGTGTCCGTTCGGTTTGGGACATTCAGTCACCATAATAACCTCCAGGCCATATGAGGAGAGATACCCTTTAATCATGGATAGGTTTGGGGGTCATGAGAGAGACAACATATAAGTTTTTAAAAGAGACATTTGAGTAGCCTAACTTTCAAGATTCCTAGGCCATCAAAAGTTTTAGGAAGGCATCCTGCAAAAGGATTCTAGACCATTGATAAGGCCTGGCCTAACTGTTAAGGTTTCTAGGCCAGTCTGACTTCCCAGAATGGATTTTTTCGGTCACCAGGAACATTTTTCAGGTGAAGAGACCAACATACTTGCAACGGGCCGGGTTTTTTTTCAGAATTTTCAGGGCCCGGCCCGGACCGCGGGCCAGGCCCTGATTTTGCAAGTATGGAGATCAACCGATTTTTCACAGAATCCATGAAGAATGTGAATAATAATTCAAAAACCGGTCGAAGTTATTTTACTGCTGTAGCCCATTATTTTTTTCACATAAAAGTTGAACTTTTGCCTTTCCTATAGGTAAAATATGGCCCTAAACACATTTTTTGGAAAAAAAAACAAAATTGAAATTGCCCCAAAAAATTATTTGCGATGGGGGTAAATTTGTGTATTTACTCAAGGTGTTGGTAGGAAACGAGAGAAATGGGAGGAGGAATATTATAAGACGAAGTGAAAATAAAAGACAGATTTCTTTAAAAAGAGAAAACTTTCAGTAAAAAGTTAAGAAAATAGGTAGAAATATCGATTTAAAAATCTCAAAAAGCAATTTTTTGAAAATGACTCATGAATTTTGAAATTGATTTCGAACTAGAGAGAAAATGCGTAAA</canonical>
            <polymorphic>AAGATTTCAAATTTTGGACAGAAAATGAGCACAACTGCAAAATAAGCCTAATCCGTACCTCTCTAGGGGTGGTTCTCAAGCTAATTACACGAAAAAGCGGGAAAAGAGAGATACACACGACAGATGTCCTTCCTGTCCTCTCGCTCGCTTGGTGCTTATTAATTTTTTTGTCCGTGTCCGTTCGGTTTGGGACATTCAGTCACCATAATAACCTCCAGGCCATATGAGGAGAGATACCCTTTAATCATGGATAGGTTTGGGGGTCATGAGAGAGACAACATATAAGTTTTTAAAAGAGACATTTGAGTAGCCTAACTTTCAAGATTCCTAGGCCATCAAAAGTTTTAGGAAGGCATCCTGCAAAAGGATTCTAGACCATTGATAAGGCCTGGCCTAACTGTTAAGGTTTCTAGGCCAGTCTGACTTCCCAGAATGGATTTTTTCGGTCACCAGGAACATTTTTCAGGTGAAGAGACCAACATACTTGCAACGGGCCGGGYTTTTTTTCAGAATTTTCAGGGCCCGGCCCGGACCGCGGGCCAGGCCCTGATTTTGCAAGTATGGAGATCAACCGATTTTTCACAGAATCCATGAAGAATGTGAATAATAATTCAAAAACCGGTCGAAGTTATTTTACTGCTGTAGCCCATTATTTTTTTCACATAAAAGTTGAACTTTTGCCTTTCCTATAGGTAAAATATGGCCCTAAACACATTTTTTGGAAAAAAAAACAAAATTGAAATTGCCCCAAAAAATTATTTGCGATGGGGGTAAATTTGTGTATTTACTCAAGGTGTTGGTAGGAAACGAGAGAAATGGGAGGAGGAATATTATAAGACGAAGTGAAAATAAAAGACAGATTTCTTTAAAAAGAGAAAACTTTCAGTAAAAAGTTAAGAAAATAGGTAGAAATATCGATTTAAAAATCTCAAAAAGCAATTTTTTGAAAATGACTCATGAATTTTGAAATTGATTTCGAACTAGAGAGAAAATGCGTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCACCAGGAACATTTTTCA</pcr_primer_p1>
		<pcr_primer_p2>TATAGGAAAGGCAAAAGTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTCACCAGGAACATTTTTCAGGTGAAGAGACCAACATACTTGCAACGGGCCGGGTTTTTTTTCAGAATTTTCAGGGCCCGGCCCGGACCGCGGGCCAGGCCCTGATTTTGCAAGTATGGAGATCAACCGATTTTTCACAGAATCCATGAAGAATGTGAATAATAATTCAAAAACCGGTCGAAGTTATTTTACTGCTGTAGCCCATTATTTTTTTCACATAAAAGTTGAACTTTTGCCTTTCCTATA</canonical_amplicon>
		<polymorphic_amplicon>GTCACCAGGAACATTTTTCAGGTGAAGAGACCAACATACTTGCAACGGGCCGGGYTTTTTTTCAGAATTTTCAGGGCCCGGCCCGGACCGCGGGCCAGGCCCTGATTTTGCAAGTATGGAGATCAACCGATTTTTCACAGAATCCATGAAGAATGTGAATAATAATTCAAAAACCGGTCGAAGTTATTTTACTGCTGTAGCCCATTATTTTTTTCACATAAAAGTTGAACTTTTGCCTTTCCTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31472</snp_id>
        <super_contig>c006400955.Contig1</super_contig>
        <contig_pos>59134</contig_pos>
        <strand>+</strand>
        <context>GYTTTTTTTC[A/T]GAATTTTCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTCAGGTGAAGAGACCAACATACTTGCAACGGGCCGGGTTTTTTTTC</left_flank>
        <right_flank>GAATTTTCAGGGCCCGGCCCGGACCGCGGGCCAGGCCCTGATTTTGCAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTGGACAGAAAATGAGCACAACTGCAAAATAAGCCTAATCCGTACCTCTCTAGGGGTGGTTCTCAAGCTAATTACACGAAAAAGCGGGAAAAGAGAGATACACACGACAGATGTCCTTCCTGTCCTCTCGCTCGCTTGGTGCTTATTAATTTTTTTGTCCGTGTCCGTTCGGTTTGGGACATTCAGTCACCATAATAACCTCCAGGCCATATGAGGAGAGATACCCTTTAATCATGGATAGGTTTGGGGGTCATGAGAGAGACAACATATAAGTTTTTAAAAGAGACATTTGAGTAGCCTAACTTTCAAGATTCCTAGGCCATCAAAAGTTTTAGGAAGGCATCCTGCAAAAGGATTCTAGACCATTGATAAGGCCTGGCCTAACTGTTAAGGTTTCTAGGCCAGTCTGACTTCCCAGAATGGATTTTTTCGGTCACCAGGAACATTTTTCAGGTGAAGAGACCAACATACTTGCAACGGGCCGGGTTTTTTTTCAGAATTTTCAGGGCCCGGCCCGGACCGCGGGCCAGGCCCTGATTTTGCAAGTATGGAGATCAACCGATTTTTCACAGAATCCATGAAGAATGTGAATAATAATTCAAAAACCGGTCGAAGTTATTTTACTGCTGTAGCCCATTATTTTTTTCACATAAAAGTTGAACTTTTGCCTTTCCTATAGGTAAAATATGGCCCTAAACACATTTTTTGGAAAAAAAAACAAAATTGAAATTGCCCCAAAAAATTATTTGCGATGGGGGTAAATTTGTGTATTTACTCAAGGTGTTGGTAGGAAACGAGAGAAATGGGAGGAGGAATATTATAAGACGAAGTGAAAATAAAAGACAGATTTCTTTAAAAAGAGAAAACTTTCAGTAAAAAGTTAAGAAAATAGGTAGAAATATCGATTTAAAAATCTCAAAAAGCAATTTTTTGAAAATGACTCATGAATTTTGAAATTGATTTCGAACTAGAGAGAAAATGCGTAAAATGGGTTCT</canonical>
            <polymorphic>AATTTTGGACAGAAAATGAGCACAACTGCAAAATAAGCCTAATCCGTACCTCTCTAGGGGTGGTTCTCAAGCTAATTACACGAAAAAGCGGGAAAAGAGAGATACACACGACAGATGTCCTTCCTGTCCTCTCGCTCGCTTGGTGCTTATTAATTTTTTTGTCCGTGTCCGTTCGGTTTGGGACATTCAGTCACCATAATAACCTCCAGGCCATATGAGGAGAGATACCCTTTAATCATGGATAGGTTTGGGGGTCATGAGAGAGACAACATATAAGTTTTTAAAAGAGACATTTGAGTAGCCTAACTTTCAAGATTCCTAGGCCATCAAAAGTTTTAGGAAGGCATCCTGCAAAAGGATTCTAGACCATTGATAAGGCCTGGCCTAACTGTTAAGGTTTCTAGGCCAGTCTGACTTCCCAGAATGGATTTTTTCGGTCACCAGGAACATTTTTCAGGTGAAGAGACCAACATACTTGCAACGGGCCGGGTTTTTTTTCWGAATTTTCAGGGCCCGGCCCGGACCGCGGGCCAGGCCCTGATTTTGCAAGTATGGAGATCAACCGATTTTTCACAGAATCCATGAAGAATGTGAATAATAATTCAAAAACCGGTCGAAGTTATTTTACTGCTGTAGCCCATTATTTTTTTCACATAAAAGTTGAACTTTTGCCTTTCCTATAGGTAAAATATGGCCCTAAACACATTTTTTGGAAAAAAAAACAAAATTGAAATTGCCCCAAAAAATTATTTGCGATGGGGGTAAATTTGTGTATTTACTCAAGGTGTTGGTAGGAAACGAGAGAAATGGGAGGAGGAATATTATAAGACGAAGTGAAAATAAAAGACAGATTTCTTTAAAAAGAGAAAACTTTCAGTAAAAAGTTAAGAAAATAGGTAGAAATATCGATTTAAAAATCTCAAAAAGCAATTTTTTGAAAATGACTCATGAATTTTGAAATTGATTTCGAACTAGAGAGAAAATGCGTAAAATGGGTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACATTTTTCAGGTGAAGAGAC</pcr_primer_p1>
		<pcr_primer_p2>TACCTATAGGAAAGGCAAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>AACATTTTTCAGGTGAAGAGACCAACATACTTGCAACGGGCCGGGTTTTTTTTCAGAATTTTCAGGGCCCGGCCCGGACCGCGGGCCAGGCCCTGATTTTGCAAGTATGGAGATCAACCGATTTTTCACAGAATCCATGAAGAATGTGAATAATAATTCAAAAACCGGTCGAAGTTATTTTACTGCTGTAGCCCATTATTTTTTTCACATAAAAGTTGAACTTTTGCCTTTCCTATAGGTA</canonical_amplicon>
		<polymorphic_amplicon>AACATTTTTCAGGTGAAGAGACCAACATACTTGCAACGGGCCGGGTTTTTTTTCWGAATTTTCAGGGCCCGGCCCGGACCGCGGGCCAGGCCCTGATTTTGCAAGTATGGAGATCAACCGATTTTTCACAGAATCCATGAAGAATGTGAATAATAATTCAAAAACCGGTCGAAGTTATTTTACTGCTGTAGCCCATTATTTTTTTCACATAAAAGTTGAACTTTTGCCTTTCCTATAGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31473</snp_id>
        <super_contig>c006400955.Contig1</super_contig>
        <contig_pos>59193</contig_pos>
        <strand>+</strand>
        <context>AGTATGGAGA[C/T]CAACCGATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGGCCCGGCCCGGACCGCGGGCCAGGCCCTGATTTTGCAAGTATGGAGA</left_flank>
        <right_flank>CAACCGATTTTTCACAGAATCCATGAAGAATGTGAATAATAATTCAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGGTTCTCAAGCTAATTACACGAAAAAGCGGGAAAAGAGAGATACACACGACAGATGTCCTTCCTGTCCTCTCGCTCGCTTGGTGCTTATTAATTTTTTTGTCCGTGTCCGTTCGGTTTGGGACATTCAGTCACCATAATAACCTCCAGGCCATATGAGGAGAGATACCCTTTAATCATGGATAGGTTTGGGGGTCATGAGAGAGACAACATATAAGTTTTTAAAAGAGACATTTGAGTAGCCTAACTTTCAAGATTCCTAGGCCATCAAAAGTTTTAGGAAGGCATCCTGCAAAAGGATTCTAGACCATTGATAAGGCCTGGCCTAACTGTTAAGGTTTCTAGGCCAGTCTGACTTCCCAGAATGGATTTTTTCGGTCACCAGGAACATTTTTCAGGTGAAGAGACCAACATACTTGCAACGGGCCGGGTTTTTTTTCAGAATTTTCAGGGCCCGGCCCGGACCGCGGGCCAGGCCCTGATTTTGCAAGTATGGAGATCAACCGATTTTTCACAGAATCCATGAAGAATGTGAATAATAATTCAAAAACCGGTCGAAGTTATTTTACTGCTGTAGCCCATTATTTTTTTCACATAAAAGTTGAACTTTTGCCTTTCCTATAGGTAAAATATGGCCCTAAACACATTTTTTGGAAAAAAAAACAAAATTGAAATTGCCCCAAAAAATTATTTGCGATGGGGGTAAATTTGTGTATTTACTCAAGGTGTTGGTAGGAAACGAGAGAAATGGGAGGAGGAATATTATAAGACGAAGTGAAAATAAAAGACAGATTTCTTTAAAAAGAGAAAACTTTCAGTAAAAAGTTAAGAAAATAGGTAGAAATATCGATTTAAAAATCTCAAAAAGCAATTTTTTGAAAATGACTCATGAATTTTGAAATTGATTTCGAACTAGAGAGAAAATGCGTAAAATGGGTTCTTTGGACAAAATTGATGAAAATTCCTACCGTAATACCTGTAATAGAAGAGCCCTCTAAAT</canonical>
            <polymorphic>GTGGTTCTCAAGCTAATTACACGAAAAAGCGGGAAAAGAGAGATACACACGACAGATGTCCTTCCTGTCCTCTCGCTCGCTTGGTGCTTATTAATTTTTTTGTCCGTGTCCGTTCGGTTTGGGACATTCAGTCACCATAATAACCTCCAGGCCATATGAGGAGAGATACCCTTTAATCATGGATAGGTTTGGGGGTCATGAGAGAGACAACATATAAGTTTTTAAAAGAGACATTTGAGTAGCCTAACTTTCAAGATTCCTAGGCCATCAAAAGTTTTAGGAAGGCATCCTGCAAAAGGATTCTAGACCATTGATAAGGCCTGGCCTAACTGTTAAGGTTTCTAGGCCAGTCTGACTTCCCAGAATGGATTTTTTCGGTCACCAGGAACATTTTTCAGGTGAAGAGACCAACATACTTGCAACGGGCCGGGTTTTTTTTCAGAATTTTCAGGGCCCGGCCCGGACCGCGGGCCAGGCCCTGATTTTGCAAGTATGGAGAYCAACCGATTTTTCACAGAATCCATGAAGAATGTGAATAATAATTCAAAAACCGGTCGAAGTTATTTTACTGCTGTAGCCCATTATTTTTTTCACATAAAAGTTGAACTTTTGCCTTTCCTATAGGTAAAATATGGCCCTAAACACATTTTTTGGAAAAAAAAACAAAATTGAAATTGCCCCAAAAAATTATTTGCGATGGGGGTAAATTTGTGTATTTACTCAAGGTGTTGGTAGGAAACGAGAGAAATGGGAGGAGGAATATTATAAGACGAAGTGAAAATAAAAGACAGATTTCTTTAAAAAGAGAAAACTTTCAGTAAAAAGTTAAGAAAATAGGTAGAAATATCGATTTAAAAATCTCAAAAAGCAATTTTTTGAAAATGACTCATGAATTTTGAAATTGATTTCGAACTAGAGAGAAAATGCGTAAAATGGGTTCTTTGGACAAAATTGATGAAAATTCCTACCGTAATACCTGTAATAGAAGAGCCCTCTAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGGTGAAGAGACCAACATACT</pcr_primer_p1>
		<pcr_primer_p2>GTTTAGGGCCATATTTTACCTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGGTGAAGAGACCAACATACTTGCAACGGGCCGGGTTTTTTTTCAGAATTTTCAGGGCCCGGCCCGGACCGCGGGCCAGGCCCTGATTTTGCAAGTATGGAGATCAACCGATTTTTCACAGAATCCATGAAGAATGTGAATAATAATTCAAAAACCGGTCGAAGTTATTTTACTGCTGTAGCCCATTATTTTTTTCACATAAAAGTTGAACTTTTGCCTTTCCTATAGGTAAAATATGGCCCTAAAC</canonical_amplicon>
		<polymorphic_amplicon>CAGGTGAAGAGACCAACATACTTGCAACGGGCCGGGTTTTTTTTCAGAATTTTCAGGGCCCGGCCCGGACCGCGGGCCAGGCCCTGATTTTGCAAGTATGGAGAYCAACCGATTTTTCACAGAATCCATGAAGAATGTGAATAATAATTCAAAAACCGGTCGAAGTTATTTTACTGCTGTAGCCCATTATTTTTTTCACATAAAAGTTGAACTTTTGCCTTTCCTATAGGTAAAATATGGCCCTAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31474</snp_id>
        <super_contig>c006400955.Contig1</super_contig>
        <contig_pos>138767</contig_pos>
        <strand>+</strand>
        <context>TCATCGACGA[A/C]GTCGTAACAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTTGCCGCCAATTCTGCGTCCGAAATTCTCGAAATATAGTCATCGACGA</left_flank>
        <right_flank>GTCGTAACAAAAATAAGTCAACTTCGAAGGAAACCTCAAAAGAAACATCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGCTGACCACTAAGCTGTCGCTGCACCCTATTTTTTATGACCGATACTTTATTGCAATTGTACTTTAATTTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACAAGGAAAGATGTAACCGGTAGAAAAAGAAAAATAGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATGCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCAGGAAGTGATGGCGTTCCACGAAGTACTTTCTCCCTAAAACACTCTAAAACTCAAGAAAATAACAATCTTCAAAAAAAAATTTCAGTTCTGCCGAAGACCACCGAGACGCCAAAGAGAAAAACGAGTTGCCGCCAATTCTGCGTCCGAAATTCTCGAAATATAGTCATCGACGACGTCGTAACAAAAATAAGTCAACTTCGAAGGAAACCTCAAAAGAAACATCTCGAGAACAATCGAAAGATGATGATACTACGGCTACAGTAGAGTTCAAGCACGACGGGATGGATAAGAATTCAGAAGACAAAGATGATGAGAAACCGTCAGCTGAGAAGGCAGACAAACGATCAAAAGAGAAATTGGAACCAGAGGATGGTGGAAATCGGGAAACACGGAATGAGAGGGAGCGAGAACAAAGGGAGCGGGAAACTGAAGAACCAGAGTGTCGAGAATCTAAAATTAGAATTATAACTGTGGAACCTGTTGGAAGTGACCCGGATTTTCGAAAACTCACAACACCTACAGTAGTCAATCAGGATGATAAAAGTGATGAAAAGAAGAAAAAGAAGGCAGATAAGGCGGATTCATTAGATGAGGGAGAAAAGAAAAGGTCAAAAGAGTCGAAGAATCCATCAAGAAGAAAAAGGTCTGCTGATCAGAAGGTGAAGAGGAATAGT</canonical>
            <polymorphic>CTGCTGACCACTAAGCTGTCGCTGCACCCTATTTTTTATGACCGATACTTTATTGCAATTGTACTTTAATTTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACAAGGAAAGATGTAACCGGTAGAAAAAGAAAAATAGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATGCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCAGGAAGTGATGGCGTTCCACGAAGTACTTTCTCCCTAAAACACTCTAAAACTCAAGAAAATAACAATCTTCAAAAAAAAATTTCAGTTCTGCCGAAGACCACCGAGACGCCAAAGAGAAAAACGAGTTGCCGCCAATTCTGCGTCCGAAATTCTCGAAATATAGTCATCGACGAMGTCGTAACAAAAATAAGTCAACTTCGAAGGAAACCTCAAAAGAAACATCTCGAGAACAATCGAAAGATGATGATACTACGGCTACAGTAGAGTTCAAGCACGACGGGATGGATAAGAATTCAGAAGACAAAGATGATGAGAAACCGTCAGCTGAGAAGGCAGACAAACGATCAAAAGAGAAATTGGAACCAGAGGATGGTGGAAATCGGGAAACACGGAATGAGAGGGAGCGAGAACAAAGGGAGCGGGAAACTGAAGAACCAGAGTGTCGAGAATCTAAAATTAGAATTATAACTGTGGAACCTGTTGGAAGTGACCCGGATTTTCGAAAACTCACAACACCTACAGTAGTCAATCAGGATGATAAAAGTGATGAAAAGAAGAAAAAGAAGGCAGATAAGGCGGATTCATTAGATGAGGGAGAAAAGAAAAGGTCAAAAGAGTCGAAGAATCCATCAAGAAGAAAAAGGTCTGCTGATCAGAAGGTGAAGAGGAATAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACGTC</site>
                <isoschizomers>
                    <enzyme>AatII</enzyme>
                    <enzyme>ZraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>501 432 67</canonical_bands>
                <polymorphic_bands>568 432</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>498 395 101 6</canonical_bands>
                <polymorphic_bands>498 395 107</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGAAGTACTTTCTCCCTAAAAC</pcr_primer_p1>
		<pcr_primer_p2>ACTGTAGCCGTAGTATCATCATC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACGAAGTACTTTCTCCCTAAAACACTCTAAAACTCAAGAAAATAACAATCTTCAAAAAAAAATTTCAGTTCTGCCGAAGACCACCGAGACGCCAAAGAGAAAAACGAGTTGCCGCCAATTCTGCGTCCGAAATTCTCGAAATATAGTCATCGACGACGTCGTAACAAAAATAAGTCAACTTCGAAGGAAACCTCAAAAGAAACATCTCGAGAACAATCGAAAGATGATGATACTACGGCTACAGT</canonical_amplicon>
		<polymorphic_amplicon>ACGAAGTACTTTCTCCCTAAAACACTCTAAAACTCAAGAAAATAACAATCTTCAAAAAAAAATTTCAGTTCTGCCGAAGACCACCGAGACGCCAAAGAGAAAAACGAGTTGCCGCCAATTCTGCGTCCGAAATTCTCGAAATATAGTCATCGACGAMGTCGTAACAAAAATAAGTCAACTTCGAAGGAAACCTCAAAAGAAACATCTCGAGAACAATCGAAAGATGATGATACTACGGCTACAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31475</snp_id>
        <super_contig>c006400955.Contig1</super_contig>
        <contig_pos>139016</contig_pos>
        <strand>+</strand>
        <context>AAGGGAGCGG[G/T]AAACTGAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGGAAATCGGGAAACACGGAATGAGAGGGAGCGAGAACAAAGGGAGCGG</left_flank>
        <right_flank>AAACTGAAGAACCAGAGTGTCGAGAATCTAAAATTAGAATTATAACTGTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAATACTGGAAGAAATTAAGGATGCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCAGGAAGTGATGGCGTTCCACGAAGTACTTTCTCCCTAAAACACTCTAAAACTCAAGAAAATAACAATCTTCAAAAAAAAATTTCAGTTCTGCCGAAGACCACCGAGACGCCAAAGAGAAAAACGAGTTGCCGCCAATTCTGCGTCCGAAATTCTCGAAATATAGTCATCGACGACGTCGTAACAAAAATAAGTCAACTTCGAAGGAAACCTCAAAAGAAACATCTCGAGAACAATCGAAAGATGATGATACTACGGCTACAGTAGAGTTCAAGCACGACGGGATGGATAAGAATTCAGAAGACAAAGATGATGAGAAACCGTCAGCTGAGAAGGCAGACAAACGATCAAAAGAGAAATTGGAACCAGAGGATGGTGGAAATCGGGAAACACGGAATGAGAGGGAGCGAGAACAAAGGGAGCGGGAAACTGAAGAACCAGAGTGTCGAGAATCTAAAATTAGAATTATAACTGTGGAACCTGTTGGAAGTGACCCGGATTTTCGAAAACTCACAACACCTACAGTAGTCAATCAGGATGATAAAAGTGATGAAAAGAAGAAAAAGAAGGCAGATAAGGCGGATTCATTAGATGAGGGAGAAAAGAAAAGGTCAAAAGAGTCGAAGAATCCATCAAGAAGAAAAAGGTCTGCTGATCAGAAGGTGAAGAGGAATAGTGGAAGAAAACAGCCGTCGGAAGAAAGGAAACGGAGAAAACGGGCACCAAACCTTTCGGTAAGCAGATTTTTTAAAACCTCTTTCTAGTTATCCAAGGGTTCTCGAAAAATCAAAATTTTCTGAGTTTTCAGAAAGAAAGTTTTAATCAAAGTCCCCGCGCCTCCCTTGCTATTCCACTGAAACAAAATTCCAACGAAAATGTTGTCCAGAAAAAATCGAAAATCCCCGCCAACAAAATTTCGGATTCGG</canonical>
            <polymorphic>GTAATACTGGAAGAAATTAAGGATGCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCAGGAAGTGATGGCGTTCCACGAAGTACTTTCTCCCTAAAACACTCTAAAACTCAAGAAAATAACAATCTTCAAAAAAAAATTTCAGTTCTGCCGAAGACCACCGAGACGCCAAAGAGAAAAACGAGTTGCCGCCAATTCTGCGTCCGAAATTCTCGAAATATAGTCATCGACGACGTCGTAACAAAAATAAGTCAACTTCGAAGGAAACCTCAAAAGAAACATCTCGAGAACAATCGAAAGATGATGATACTACGGCTACAGTAGAGTTCAAGCACGACGGGATGGATAAGAATTCAGAAGACAAAGATGATGAGAAACCGTCAGCTGAGAAGGCAGACAAACGATCAAAAGAGAAATTGGAACCAGAGGATGGTGGAAATCGGGAAACACGGAATGAGAGGGAGCGAGAACAAAGGGAGCGGKAAACTGAAGAACCAGAGTGTCGAGAATCTAAAATTAGAATTATAACTGTGGAACCTGTTGGAAGTGACCCGGATTTTCGAAAACTCACAACACCTACAGTAGTCAATCAGGATGATAAAAGTGATGAAAAGAAGAAAAAGAAGGCAGATAAGGCGGATTCATTAGATGAGGGAGAAAAGAAAAGGTCAAAAGAGTCGAAGAATCCATCAAGAAGAAAAAGGTCTGCTGATCAGAAGGTGAAGAGGAATAGTGGAAGAAAACAGCCGTCGGAAGAAAGGAAACGGAGAAAACGGGCACCAAACCTTTCGGTAAGCAGATTTTTTAAAACCTCTTTCTAGTTATCCAAGGGTTCTCGAAAAATCAAAATTTTCTGAGTTTTCAGAAAGAAAGTTTTAATCAAAGTCCCCGCGCCTCCCTTGCTATTCCACTGAAACAAAATTCCAACGAAAATGTTGTCCAGAAAAAATCGAAAATCCCCGCCAACAAAATTTCGGATTCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAATTCAGAAGACAAAGATGA</pcr_primer_p1>
		<pcr_primer_p2>ATCCTGATTGACTACTGTAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGAATTCAGAAGACAAAGATGATGAGAAACCGTCAGCTGAGAAGGCAGACAAACGATCAAAAGAGAAATTGGAACCAGAGGATGGTGGAAATCGGGAAACACGGAATGAGAGGGAGCGAGAACAAAGGGAGCGGGAAACTGAAGAACCAGAGTGTCGAGAATCTAAAATTAGAATTATAACTGTGGAACCTGTTGGAAGTGACCCGGATTTTCGAAAACTCACAACACCTACAGTAGTCAATCAGGAT</canonical_amplicon>
		<polymorphic_amplicon>AAGAATTCAGAAGACAAAGATGATGAGAAACCGTCAGCTGAGAAGGCAGACAAACGATCAAAAGAGAAATTGGAACCAGAGGATGGTGGAAATCGGGAAACACGGAATGAGAGGGAGCGAGAACAAAGGGAGCGGKAAACTGAAGAACCAGAGTGTCGAGAATCTAAAATTAGAATTATAACTGTGGAACCTGTTGGAAGTGACCCGGATTTTCGAAAACTCACAACACCTACAGTAGTCAATCAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31476</snp_id>
        <super_contig>c006400955.Contig1</super_contig>
        <contig_pos>139052</contig_pos>
        <strand>+</strand>
        <context>ATCTAAAATT[A/C]GAATTATAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACAAAGGGAGCGGGAAACTGAAGAACCAGAGTGTCGAGAATCTAAAATT</left_flank>
        <right_flank>GAATTATAACTGTGGAACCTGTTGGAAGTGACCCGGATTTTCGAAAACTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCAGGAAGTGATGGCGTTCCACGAAGTACTTTCTCCCTAAAACACTCTAAAACTCAAGAAAATAACAATCTTCAAAAAAAAATTTCAGTTCTGCCGAAGACCACCGAGACGCCAAAGAGAAAAACGAGTTGCCGCCAATTCTGCGTCCGAAATTCTCGAAATATAGTCATCGACGACGTCGTAACAAAAATAAGTCAACTTCGAAGGAAACCTCAAAAGAAACATCTCGAGAACAATCGAAAGATGATGATACTACGGCTACAGTAGAGTTCAAGCACGACGGGATGGATAAGAATTCAGAAGACAAAGATGATGAGAAACCGTCAGCTGAGAAGGCAGACAAACGATCAAAAGAGAAATTGGAACCAGAGGATGGTGGAAATCGGGAAACACGGAATGAGAGGGAGCGAGAACAAAGGGAGCGGGAAACTGAAGAACCAGAGTGTCGAGAATCTAAAATTAGAATTATAACTGTGGAACCTGTTGGAAGTGACCCGGATTTTCGAAAACTCACAACACCTACAGTAGTCAATCAGGATGATAAAAGTGATGAAAAGAAGAAAAAGAAGGCAGATAAGGCGGATTCATTAGATGAGGGAGAAAAGAAAAGGTCAAAAGAGTCGAAGAATCCATCAAGAAGAAAAAGGTCTGCTGATCAGAAGGTGAAGAGGAATAGTGGAAGAAAACAGCCGTCGGAAGAAAGGAAACGGAGAAAACGGGCACCAAACCTTTCGGTAAGCAGATTTTTTAAAACCTCTTTCTAGTTATCCAAGGGTTCTCGAAAAATCAAAATTTTCTGAGTTTTCAGAAAGAAAGTTTTAATCAAAGTCCCCGCGCCTCCCTTGCTATTCCACTGAAACAAAATTCCAACGAAAATGTTGTCCAGAAAAAATCGAAAATCCCCGCCAACAAAATTTCGGATTCGGCTTCAAAAGTTCAGCCAATTGCTAAAAATCAGCAAG</canonical>
            <polymorphic>GGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCAGGAAGTGATGGCGTTCCACGAAGTACTTTCTCCCTAAAACACTCTAAAACTCAAGAAAATAACAATCTTCAAAAAAAAATTTCAGTTCTGCCGAAGACCACCGAGACGCCAAAGAGAAAAACGAGTTGCCGCCAATTCTGCGTCCGAAATTCTCGAAATATAGTCATCGACGACGTCGTAACAAAAATAAGTCAACTTCGAAGGAAACCTCAAAAGAAACATCTCGAGAACAATCGAAAGATGATGATACTACGGCTACAGTAGAGTTCAAGCACGACGGGATGGATAAGAATTCAGAAGACAAAGATGATGAGAAACCGTCAGCTGAGAAGGCAGACAAACGATCAAAAGAGAAATTGGAACCAGAGGATGGTGGAAATCGGGAAACACGGAATGAGAGGGAGCGAGAACAAAGGGAGCGGGAAACTGAAGAACCAGAGTGTCGAGAATCTAAAATTMGAATTATAACTGTGGAACCTGTTGGAAGTGACCCGGATTTTCGAAAACTCACAACACCTACAGTAGTCAATCAGGATGATAAAAGTGATGAAAAGAAGAAAAAGAAGGCAGATAAGGCGGATTCATTAGATGAGGGAGAAAAGAAAAGGTCAAAAGAGTCGAAGAATCCATCAAGAAGAAAAAGGTCTGCTGATCAGAAGGTGAAGAGGAATAGTGGAAGAAAACAGCCGTCGGAAGAAAGGAAACGGAGAAAACGGGCACCAAACCTTTCGGTAAGCAGATTTTTTAAAACCTCTTTCTAGTTATCCAAGGGTTCTCGAAAAATCAAAATTTTCTGAGTTTTCAGAAAGAAAGTTTTAATCAAAGTCCCCGCGCCTCCCTTGCTATTCCACTGAAACAAAATTCCAACGAAAATGTTGTCCAGAAAAAATCGAAAATCCCCGCCAACAAAATTTCGGATTCGGCTTCAAAAGTTCAGCCAATTGCTAAAAATCAGCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAATTCAGAAGACAAAGATGA</pcr_primer_p1>
		<pcr_primer_p2>ATCCTGATTGACTACTGTAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGAATTCAGAAGACAAAGATGATGAGAAACCGTCAGCTGAGAAGGCAGACAAACGATCAAAAGAGAAATTGGAACCAGAGGATGGTGGAAATCGGGAAACACGGAATGAGAGGGAGCGAGAACAAAGGGAGCGGGAAACTGAAGAACCAGAGTGTCGAGAATCTAAAATTAGAATTATAACTGTGGAACCTGTTGGAAGTGACCCGGATTTTCGAAAACTCACAACACCTACAGTAGTCAATCAGGAT</canonical_amplicon>
		<polymorphic_amplicon>AAGAATTCAGAAGACAAAGATGATGAGAAACCGTCAGCTGAGAAGGCAGACAAACGATCAAAAGAGAAATTGGAACCAGAGGATGGTGGAAATCGGGAAACACGGAATGAGAGGGAGCGAGAACAAAGGGAGCGGGAAACTGAAGAACCAGAGTGTCGAGAATCTAAAATTMGAATTATAACTGTGGAACCTGTTGGAAGTGACCCGGATTTTCGAAAACTCACAACACCTACAGTAGTCAATCAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31477</snp_id>
        <super_contig>c006401010.Contig1</super_contig>
        <contig_pos>3944</contig_pos>
        <strand></strand>
        <context>TAAAAATCGA[G/A]TTCTGTAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTTTATTTTTTCACTTTTATCTGCGTTTAAAATCTAATCTAAAAATCGA</left_flank>
        <right_flank>TTCTGTAAAATGCATTCAATTTTCGGGAATTCTTTTTGTTTCAAAAAATT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTGAAAACTCACGATTCTGTAGCTTCCAAATAGTTATAAGTAACACAATATTGATTTTCCAAAATCTCCGAAAAATAATATTCTCGTCCGAGAATATTCTGAAAATTCGTGGAATTTTTGCCTTTGATTACTGTCACTTACTTTCAGCAAAATTATGAAAAAAAATAAAATCAAAATATTTGAAAATATGAAAAATATTGCATATGGATTTTTCATCATCGAAAAAAACGATTTTTTCGAATTCGAAAATTTGGAAAAATTCGAGAAATTCAAAATCGTTCAAATTCATCGAAATTTCATTTTATACTGATCCGGGTGATTTTTTTCAGTACGAAAAATCGAAAATCGAGAAATCTGATGCATTTTATTTTTTCACTTTTATCTGCGTTTAAAATCTAATCTAAAAATCGAGTTCTGTAAAATGCATTCAATTTTCGGGAATTCTTTTTGTTTCAAAAAATTGTAAGAAAAAAAGAAAAAAAAAGTTACAGTTGTGTAATGCAAAATGTAGACTTCCTAATTAAAATTTCAAAACATTCATTCCATGACGTTTCTGCGACTTGATAATTCCTTCCAATGCTCGAACTTGCATAAACTTCTCGAACTGGTATAGTTTGGATTTTGGGTTCTAAAAACTTATAATAATTACATTCAAATATGTTTTCTTAGCTTCCAACTTTTTAAAATTCAAAATGGTTTTCACTGCGTTCCAATTAGGTTGATAAACCAAAAGAATCTCTGAACTCTCAATCAATCCGTTTAGTCCAAACAATATCATTCCCAAATTCATAAGGCCTTGATTGTAATTATCAGTCAAAACTTGAGCTATTAAGATAAGTGGAGGGATGATGATAGTTAATAATGGAATTGAAGTTTGAATGATGATTCCAATGAAAAAATGAGTGCAAATCA</canonical>
            <polymorphic>TTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTGAAAACTCACGATTCTGTAGCTTCCAAATAGTTATAAGTAACACAATATTGATTTTCCAAAATCTCCGAAAAATAATATTCTCGTCCGAGAATATTCTGAAAATTCGTGGAATTTTTGCCTTTGATTACTGTCACTTACTTTCAGCAAAATTATGAAAAAAAATAAAATCAAAATATTTGAAAATATGAAAAATATTGCATATGGATTTTTCATCATCGAAAAAAACGATTTTTTCGAATTCGAAAATTTGGAAAAATTCGAGAAATTCAAAATCGTTCAAATTCATCGAAATTTCATTTTATACTGATCCGGGTGATTTTTTTCAGTACGAAAAATCGAAAATCGAGAAATCTGATGCATTTTATTTTTTCACTTTTATCTGCGTTTAAAATCTAATCTAAAAATCGARTTCTGTAAAATGCATTCAATTTTCGGGAATTCTTTTTGTTTCAAAAAATTGTAAGAAAAAAAGAAAAAAAAAGTTACAGTTGTGTAATGCAAAATGTAGACTTCCTAATTAAAATTTCAAAACATTCATTCCATGACGTTTCTGCGACTTGATAATTCCTTCCAATGCTCGAACTTGCATAAACTTCTCGAACTGGTATAGTTTGGATTTTGGGTTCTAAAAACTTATAATAATTACATTCAAATATGTTTTCTTAGCTTCCAACTTTTTAAAATTCAAAATGGTTTTCACTGCGTTCCAATTAGGTTGATAAACCAAAAGAATCTCTGAACTCTCAATCAATCCGTTTAGTCCAAACAATATCATTCCCAAATTCATAAGGCCTTGATTGTAATTATCAGTCAAAACTTGAGCTATTAAGATAAGTGGAGGGATGATGATAGTTAATAATGGAATTGAAGTTTGAATGATGATTCCAATGAAAAAATGAGTGCAAATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTCGAGAAATTCAAAATC</pcr_primer_p1>
		<pcr_primer_p2>TTGCATTACACAACTGTAACTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTCGAGAAATTCAAAATCGTTCAAATTCATCGAAATTTCATTTTATACTGATCCGGGTGATTTTTTTCAGTACGAAAAATCGAAAATCGAGAAATCTGATGCATTTTATTTTTTCACTTTTATCTGCGTTTAAAATCTAATCTAAAAATCGAGTTCTGTAAAATGCATTCAATTTTCGGGAATTCTTTTTGTTTCAAAAAATTGTAAGAAAAAAAGAAAAAAAAAGTTACAGTTGTGTAATGCAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTCGAGAAATTCAAAATCGTTCAAATTCATCGAAATTTCATTTTATACTGATCCGGGTGATTTTTTTCAGTACGAAAAATCGAAAATCGAGAAATCTGATGCATTTTATTTTTTCACTTTTATCTGCGTTTAAAATCTAATCTAAAAATCGARTTCTGTAAAATGCATTCAATTTTCGGGAATTCTTTTTGTTTCAAAAAATTGTAAGAAAAAAAGAAAAAAAAAGTTACAGTTGTGTAATGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31478</snp_id>
        <super_contig>c006401010.Contig1</super_contig>
        <contig_pos>47135</contig_pos>
        <strand>+</strand>
        <context>AAATGAAGAT[C/T]GATGCATCGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGAGATTCGAAGCTATTCAATGCGATGCTATCTGTTCAGAAATGAAGAT</left_flank>
        <right_flank>GATGCATCGAAAGGAAGATCAGTGTTTCAAGTGGACAATGGGAAGAGTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAAGTATTCAAAAAAAAAAAAGATATATTCAAAATTTTCCCCGGATTTCTCTAATAGGATTCTCAGAACTTTTTAGTTTTTTAGACTGTTTAAATTTTCTAAATTTCAGATAACCCTACCTATGCTCATAAATACCACGTTTCAAAGTCTGAAGCTGTACCTTTTTCCTATGACCTGTATGGAAACAAACCGATTGTCGTGGAAGCTGAAACCAGAGTTTCAGCCACTATCTTACCGGTCAACCGCTACAAAACCCAGTATCTAAGAGGAATCATCTATTTGGACGGTCCAAATTTCACATCTCCATGTCTCGGCACCGGATTACAATTGTTAAACGGAAACACGCAATTTGTGTCGAAAGGCAATTTTCTTACTGTATTGATTCTCGGCAACTCTGGATCCAATCCTCTGCTTTTATTCAACGATTTTTACAATATGAACGGAATCAAGAGATTCGAAGCTATTCAATGCGATGCTATCTGTTCAGAAATGAAGATCGATGCATCGAAAGGAAGATCAGTGTTTCAAGTGGACAATGGGAAGAGTCAATACATCCTTCAGAAAATGACAGGTTTCGGAAAATTGGATGTTTATGCCGGGAATTTGACTCCGGAGAAGCGGAATTTGATTGCAAGTTATGAGTAAGTTTTCAAAATAACCGAACAAGAATCTTTAAGCTCATTCGTTTCGGTTTCTATTAGAGATATCAAAACATTTACTACTGATAATTTGTTTATTATAATATCACCAATAATTTATCAGTTGACAGATTGTTGATATCTCTCATAGGAACCGAGATAATTGATCTCAAAATGCACGTATAGAGTGTGCATTTTGATTTGAACAACAATTTTTTAGTTTTCTACAGAAACCAGAAAATTCGGTTACCTGAAAAGAAGTAAAACCAAAAAAAGTTTCCAGTCTCACAGCTGATAATCACTTATCACTTCCACAAGTATTCAAGGATGGTTCACAACTTTTGTGATGGAATCTGGTAA</canonical>
            <polymorphic>CAAAAGTATTCAAAAAAAAAAAAGATATATTCAAAATTTTCCCCGGATTTCTCTAATAGGATTCTCAGAACTTTTTAGTTTTTTAGACTGTTTAAATTTTCTAAATTTCAGATAACCCTACCTATGCTCATAAATACCACGTTTCAAAGTCTGAAGCTGTACCTTTTTCCTATGACCTGTATGGAAACAAACCGATTGTCGTGGAAGCTGAAACCAGAGTTTCAGCCACTATCTTACCGGTCAACCGCTACAAAACCCAGTATCTAAGAGGAATCATCTATTTGGACGGTCCAAATTTCACATCTCCATGTCTCGGCACCGGATTACAATTGTTAAACGGAAACACGCAATTTGTGTCGAAAGGCAATTTTCTTACTGTATTGATTCTCGGCAACTCTGGATCCAATCCTCTGCTTTTATTCAACGATTTTTACAATATGAACGGAATCAAGAGATTCGAAGCTATTCAATGCGATGCTATCTGTTCAGAAATGAAGATYGATGCATCGAAAGGAAGATCAGTGTTTCAAGTGGACAATGGGAAGAGTCAATACATCCTTCAGAAAATGACAGGTTTCGGAAAATTGGATGTTTATGCCGGGAATTTGACTCCGGAGAAGCGGAATTTGATTGCAAGTTATGAGTAAGTTTTCAAAATAACCGAACAAGAATCTTTAAGCTCATTCGTTTCGGTTTCTATTAGAGATATCAAAACATTTACTACTGATAATTTGTTTATTATAATATCACCAATAATTTATCAGTTGACAGATTGTTGATATCTCTCATAGGAACCGAGATAATTGATCTCAAAATGCACGTATAGAGTGTGCATTTTGATTTGAACAACAATTTTTTAGTTTTCTACAGAAACCAGAAAATTCGGTTACCTGAAAAGAAGTAAAACCAAAAAAAGTTTCCAGTCTCACAGCTGATAATCACTTATCACTTCCACAAGTATTCAAGGATGGTTCACAACTTTTGTGATGGAATCTGGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>399 289 195 97 20</canonical_bands>
                <polymorphic_bands>399 289 195 117</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>492 358 100 42 8</canonical_bands>
                <polymorphic_bands>492 358 100 50</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTACAATTGTTAAACGGAAACA</pcr_primer_p1>
		<pcr_primer_p2>TGTCATTTTCTGAAGGATGTATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTACAATTGTTAAACGGAAACACGCAATTTGTGTCGAAAGGCAATTTTCTTACTGTATTGATTCTCGGCAACTCTGGATCCAATCCTCTGCTTTTATTCAACGATTTTTACAATATGAACGGAATCAAGAGATTCGAAGCTATTCAATGCGATGCTATCTGTTCAGAAATGAAGATCGATGCATCGAAAGGAAGATCAGTGTTTCAAGTGGACAATGGGAAGAGTCAATACATCCTTCAGAAAATGACA</canonical_amplicon>
		<polymorphic_amplicon>ATTACAATTGTTAAACGGAAACACGCAATTTGTGTCGAAAGGCAATTTTCTTACTGTATTGATTCTCGGCAACTCTGGATCCAATCCTCTGCTTTTATTCAACGATTTTTACAATATGAACGGAATCAAGAGATTCGAAGCTATTCAATGCGATGCTATCTGTTCAGAAATGAAGATYGATGCATCGAAAGGAAGATCAGTGTTTCAAGTGGACAATGGGAAGAGTCAATACATCCTTCAGAAAATGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31479</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>17076</contig_pos>
        <strand>+</strand>
        <context>GCAGAGATGA[C/G]CAATATTTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CACCATCCAATGGATCAACGTCTTCTTTTGCTAAAAACGAGCAGAGATGA</left_flank>
        <right_flank>CAATATTTCGAGTTCACACAGAAAACTCACGACATTGACAGCGTATGGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTATGAAGACGTGACCGCGTCGCTGGAGAAAATGTGTAATGATGATGACTGGATGCAGCCGATGGAGAATTGTAACCGGCGGTATCTCCTCCTCTCTTTTTCTCTTCCAGAGCCGCACTCGGTTTGGAGTTGAATTGAAGCACGGGAAGCTGTTTCGCCTTCTTGGCCTTCTTCTTTTTCTCTTTCTCAACTGCCTTTTCCTTTTCGTAGAGAGCTTGCTTATCTCGTGTCATTTGTCCCCGGTTGCATCTACATCGGCAGAACTTTCCGACGAGTGATTGTCCTTTTCTTTCCCATAAATTGTTGCGTCTTTGTGGTACTGTCCACCCGCGAGCGCTTCCGAGCGTTGCTAGCCGTCGCACAAGATTGTCTTCGAGAAGCTGATAGCAAACCGAATGAAGTGGTCGGCTAGAATAGGGGCATGACTCCCAGGTACATGTCATCTTGACACCATCCAATGGATCAACGTCTTCTTTTGCTAAAAACGAGCAGAGATGAGCAATATTTCGAGTTCACACAGAAAACTCACGACATTGACAGCGTATGGGATCTAATACTGGGCATCCTACGACTGGAGCACTGCCGGAAGACGAATTGGAACCTCCTCCATCGGCTGATGATGTATTTCGACCTCGTTTCACAATCTCGTTTCTTCTAAGCCCTCGAGGCATCGTTGAAAACTTCTGTGGTTTGAGCGATTCTATGTGGACTGTCTGAAAAAATAAGGTGCATGTCTTCGGAATGATCGAATAATGGGTCAAAACCATCCAGCGTGAAATTATTCGAAAGATTTCGAAAAAAGAAAGAAACTTTGTTTTGAAAACAAGTATGTAAAAAAACAAAAATTGTCCGGAACGGGTACGCAAGATCTCGTGAGAGTGTTCACACCTAATGCGCACAATTAGGATCTACAGTAATCTCCAATATTTCGCTCGAAGCTTCAGATTTAAAATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGAGTATTTTTTGCAG</canonical>
            <polymorphic>TGTATGAAGACGTGACCGCGTCGCTGGAGAAAATGTGTAATGATGATGACTGGATGCAGCCGATGGAGAATTGTAACCGGCGGTATCTCCTCCTCTCTTTTTCTCTTCCAGAGCCGCACTCGGTTTGGAGTTGAATTGAAGCACGGGAAGCTGTTTCGCCTTCTTGGCCTTCTTCTTTTTCTCTTTCTCAACTGCCTTTTCCTTTTCGTAGAGAGCTTGCTTATCTCGTGTCATTTGTCCCCGGTTGCATCTACATCGGCAGAACTTTCCGACGAGTGATTGTCCTTTTCTTTCCCATAAATTGTTGCGTCTTTGTGGTACTGTCCACCCGCGAGCGCTTCCGAGCGTTGCTAGCCGTCGCACAAGATTGTCTTCGAGAAGCTGATAGCAAACCGAATGAAGTGGTCGGCTAGAATAGGGGCATGACTCCCAGGTACATGTCATCTTGACACCATCCAATGGATCAACGTCTTCTTTTGCTAAAAACGAGCAGAGATGASCAATATTTCGAGTTCACACAGAAAACTCACGACATTGACAGCGTATGGGATCTAATACTGGGCATCCTACGACTGGAGCACTGCCGGAAGACGAATTGGAACCTCCTCCATCGGCTGATGATGTATTTCGACCTCGTTTCACAATCTCGTTTCTTCTAAGCCCTCGAGGCATCGTTGAAAACTTCTGTGGTTTGAGCGATTCTATGTGGACTGTCTGAAAAAATAAGGTGCATGTCTTCGGAATGATCGAATAATGGGTCAAAACCATCCAGCGTGAAATTATTCGAAAGATTTCGAAAAAAGAAAGAAACTTTGTTTTGAAAACAAGTATGTAAAAAAACAAAAATTGTCCGGAACGGGTACGCAAGATCTCGTGAGAGTGTTCACACCTAATGCGCACAATTAGGATCTACAGTAATCTCCAATATTTCGCTCGAAGCTTCAGATTTAAAATATTATGCTTGTCTGAGAAAAAAAAGGTTAGAGAGTATTTTTTGCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAGAATAGGGGCATGACT</pcr_primer_p1>
		<pcr_primer_p2>TAGAAGAAACGAGATTGTGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTAGAATAGGGGCATGACTCCCAGGTACATGTCATCTTGACACCATCCAATGGATCAACGTCTTCTTTTGCTAAAAACGAGCAGAGATGAGCAATATTTCGAGTTCACACAGAAAACTCACGACATTGACAGCGTATGGGATCTAATACTGGGCATCCTACGACTGGAGCACTGCCGGAAGACGAATTGGAACCTCCTCCATCGGCTGATGATGTATTTCGACCTCGTTTCACAATCTCGTTTCTTCTA</canonical_amplicon>
		<polymorphic_amplicon>GCTAGAATAGGGGCATGACTCCCAGGTACATGTCATCTTGACACCATCCAATGGATCAACGTCTTCTTTTGCTAAAAACGAGCAGAGATGASCAATATTTCGAGTTCACACAGAAAACTCACGACATTGACAGCGTATGGGATCTAATACTGGGCATCCTACGACTGGAGCACTGCCGGAAGACGAATTGGAACCTCCTCCATCGGCTGATGATGTATTTCGACCTCGTTTCACAATCTCGTTTCTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31480</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>55238</contig_pos>
        <strand></strand>
        <context>TCCCTTCGGT[T/A]TTCACCGTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GCCCTATAGCCTCTTCCCTCTCAAAATCTTCAACATCTGCTCCCTTCGGT</left_flank>
        <right_flank>TTCACCGTCGTCGTCACCATCATCAAGCTTCCCATCCATAATGGACTTTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTATGACACTCCAGAAGTCTGTAAAGCGATTTCCAGTTCTGGGTGGAGTAGTAGACGAGTGCCTGGGCTTTCAAAGCAGATTCCATACTCTGGTAACATTGTGGAAGGTTGTAGATGAATGTTGCCTGTAAATTGCTTATGTGAAATTGTGAAAAACAAACGTTTGGAGGTGTAAATGAGAAGATTGAAATGAAAGGCTGGGAGACTTGAACTGAAATTCTATTTTTGAAACTGTTAATGAAGTTTGATTTTTCTAAATGTCCGATGACTATTTTTTTATCATTTTTTAACACTCCAGGATCAAAAACTCTCCAGAAAGTTTTATGCAATCGGAAGCTGTGAAATTTTCTCGGCCAACTTTCATAAGGCTGATGTTACTTTGCCGCCACTTTCTTTTAACCTTATGAGCAAAATATGATATTTGAATATTGACTACTTGCTCTTTGAGCCCTATAGCCTCTTCCCTCTCAAAATCTTCAACATCTGCTCCCTTCGGTTTTCACCGTCGTCGTCACCATCATCAAGCTTCCCATCCATAATGGACTTTTGTTTGCTTTATAGAAAGAAAAAAGAAAAGCACGCGAGCAGCAGCGCCATGAGGCCTACCGTACTCCTCTTTTCCGCCACCTTATTTCCTTCTGTCACCAATTTCTTGCTACTGGCTTGACTCTGACTCAAAACCGCAAGAAATTCGTGGATGATGATGAAAAGGCGGCAGAAAAGTGAGAGACTACGTCAAATGTTCGTCAAAACGGATGATAAGTGACACATGACACCTGCGTTCGAAGAGGGAAAAATCCGAGATGAAGAAGTTGGAAAAAGTGGGGGAGAAAATGATGAAAACCGACAAAGTTTTGGAAGAGAAAAATGAATTGGAGGAAAAAAAACAACACATTGGTAGAACGGAATAAATTCTTACCAATTGCTCAGTTCTTCCAGTTTGGAGTCCTTCGTTGAACAGTGACTCACAAATGCACACGATTTCTTGCTCCGAATAT</canonical>
            <polymorphic>ATTTATGACACTCCAGAAGTCTGTAAAGCGATTTCCAGTTCTGGGTGGAGTAGTAGACGAGTGCCTGGGCTTTCAAAGCAGATTCCATACTCTGGTAACATTGTGGAAGGTTGTAGATGAATGTTGCCTGTAAATTGCTTATGTGAAATTGTGAAAAACAAACGTTTGGAGGTGTAAATGAGAAGATTGAAATGAAAGGCTGGGAGACTTGAACTGAAATTCTATTTTTGAAACTGTTAATGAAGTTTGATTTTTCTAAATGTCCGATGACTATTTTTTTATCATTTTTTAACACTCCAGGATCAAAAACTCTCCAGAAAGTTTTATGCAATCGGAAGCTGTGAAATTTTCTCGGCCAACTTTCATAAGGCTGATGTTACTTTGCCGCCACTTTCTTTTAACCTTATGAGCAAAATATGATATTTGAATATTGACTACTTGCTCTTTGAGCCCTATAGCCTCTTCCCTCTCAAAATCTTCAACATCTGCTCCCTTCGGTWTTCACCGTCGTCGTCACCATCATCAAGCTTCCCATCCATAATGGACTTTTGTTTGCTTTATAGAAAGAAAAAAGAAAAGCACGCGAGCAGCAGCGCCATGAGGCCTACCGTACTCCTCTTTTCCGCCACCTTATTTCCTTCTGTCACCAATTTCTTGCTACTGGCTTGACTCTGACTCAAAACCGCAAGAAATTCGTGGATGATGATGAAAAGGCGGCAGAAAAGTGAGAGACTACGTCAAATGTTCGTCAAAACGGATGATAAGTGACACATGACACCTGCGTTCGAAGAGGGAAAAATCCGAGATGAAGAAGTTGGAAAAAGTGGGGGAGAAAATGATGAAAACCGACAAAGTTTTGGAAGAGAAAAATGAATTGGAGGAAAAAAAACAACACATTGGTAGAACGGAATAAATTCTTACCAATTGCTCAGTTCTTCCAGTTTGGAGTCCTTCGTTGAACAGTGACTCACAAATGCACACGATTTCTTGCTCCGAATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCAGAAAGTTTTATGCAATC</pcr_primer_p1>
		<pcr_primer_p2>ATAAAGCAAACAAAAGTCCATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCCAGAAAGTTTTATGCAATCGGAAGCTGTGAAATTTTCTCGGCCAACTTTCATAAGGCTGATGTTACTTTGCCGCCACTTTCTTTTAACCTTATGAGCAAAATATGATATTTGAATATTGACTACTTGCTCTTTGAGCCCTATAGCCTCTTCCCTCTCAAAATCTTCAACATCTGCTCCCTTCGGTTTTCACCGTCGTCGTCACCATCATCAAGCTTCCCATCCATAATGGACTTTTGTTTGCTTTAT</canonical_amplicon>
		<polymorphic_amplicon>CTCCAGAAAGTTTTATGCAATCGGAAGCTGTGAAATTTTCTCGGCCAACTTTCATAAGGCTGATGTTACTTTGCCGCCACTTTCTTTTAACCTTATGAGCAAAATATGATATTTGAATATTGACTACTTGCTCTTTGAGCCCTATAGCCTCTTCCCTCTCAAAATCTTCAACATCTGCTCCCTTCGGTWTTCACCGTCGTCGTCACCATCATCAAGCTTCCCATCCATAATGGACTTTTGTTTGCTTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31481</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>92730</contig_pos>
        <strand></strand>
        <context>ccggcccttc[C/T]attgttccaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGTGAGTTTTAATATACCGTAAAACCTGTATTAGAAGGGCCGGCCCTTC</left_flank>
        <right_flank>ATTGTTCCAAGGTACCTCCGGAGGGCCCTTCTATTACAGGGGCCCTTCAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATATTCAGAATCCTCCGGTTTCCGAAAATCGCATCGACGCCATAGTGGGACAGGGAGAGTGGATGAAATACAAATTGATCGATTTGGCTTTCGTCAAAAAGCTTTTTGATGAATCCAGAAAAAGTGTGGTGTCGATTTGTCGGACCGATGTTGACGATGAGAAATTTCTGGCGACGCTGAGTGCTCTTGCTCAAGCCTGTGATCTTACGCTTCGAACAGTGAGCTTTTTCAAAAATTTCATGGTGTTTTCCTCCGATGGAAGCCCACCAAAAAATTTCAACTTTGAGCTCGGGTGGGCTTATAGGGATTACGGTAAATAGAAAACAAATTTCAGCGAGAAGAGCAAAGCGCATGGGTTACGGTTTTTGGACAAGTGTGCTATGGTTTGTTCTTGGAAGCGTACGACAAGCTTACCCAACTTCCCAGTATTGCAGAAACTGTCGACAATGTGAGTTTTAATATACCGTAAAACCTGTATTAGAAGGGCCGGCCCTTCCATTGTTCCAAGGTACCTCCGGAGGGCCCTTCTATTACAGGGGCCCTTCAATTAGAGGGGGCTCTTCTATTCTTCCAGCCAGTTTTTTTTCCGAAATTTAGCATAGAAAAACTCGACGAATTCACGCAAATCTGCCGATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAACCTCTATTAAATTGTGGAGTTCCCGAAATATTTTCCACTGAAAAAGAACAGAAATTTTCTGATCTTAAAACACATTTTGAAGGGGGTCCTTCTTCACAAAGGGTCCTTCTATTACGGGGGCCCTTCTATTACAGGGGGACCATCTATTTTTCCGAGCCCCTCTCGGAGGGCCCTTATATTAGAGGGGCCTTTCTATTAAAGGGGCCCTTCTAATACAGGTTTTACGGTATCCAACTCAATGTATAACAAAAAAAGTTTTTTTTTTCTCATTCAGGTGGCCCGGAACCTTGCTATCGAAAATAACTTGTCTGCT</canonical>
            <polymorphic>AGAATATTCAGAATCCTCCGGTTTCCGAAAATCGCATCGACGCCATAGTGGGACAGGGAGAGTGGATGAAATACAAATTGATCGATTTGGCTTTCGTCAAAAAGCTTTTTGATGAATCCAGAAAAAGTGTGGTGTCGATTTGTCGGACCGATGTTGACGATGAGAAATTTCTGGCGACGCTGAGTGCTCTTGCTCAAGCCTGTGATCTTACGCTTCGAACAGTGAGCTTTTTCAAAAATTTCATGGTGTTTTCCTCCGATGGAAGCCCACCAAAAAATTTCAACTTTGAGCTCGGGTGGGCTTATAGGGATTACGGTAAATAGAAAACAAATTTCAGCGAGAAGAGCAAAGCGCATGGGTTACGGTTTTTGGACAAGTGTGCTATGGTTTGTTCTTGGAAGCGTACGACAAGCTTACCCAACTTCCCAGTATTGCAGAAACTGTCGACAATGTGAGTTTTAATATACCGTAAAACCTGTATTAGAAGGGCCGGCCCTTCYATTGTTCCAAGGTACCTCCGGAGGGCCCTTCTATTACAGGGGCCCTTCAATTAGAGGGGGCTCTTCTATTCTTCCAGCCAGTTTTTTTTCCGAAATTTAGCATAGAAAAACTCGACGAATTCACGCAAATCTGCCGATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAACCTCTATTAAATTGTGGAGTTCCCGAAATATTTTCCACTGAAAAAGAACAGAAATTTTCTGATCTTAAAACACATTTTGAAGGGGGTCCTTCTTCACAAAGGGTCCTTCTATTACGGGGGCCCTTCTATTACAGGGGGACCATCTATTTTTCCGAGCCCCTCTCGGAGGGCCCTTATATTAGAGGGGCCTTTCTATTAAAGGGGCCCTTCTAATACAGGTTTTACGGTATCCAACTCAATGTATAACAAAAAAAGTTTTTTTTTTCTCATTCAGGTGGCCCGGAACCTTGCTATCGAAAATAACTTGTCTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTCGACAATGTGAGTTTTAAT</pcr_primer_p1>
		<pcr_primer_p2>CCCCTTCAAAATGTGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>332</pcr_amplicon_size>
		<canonical_amplicon>CTGTCGACAATGTGAGTTTTAATATACCGTAAAACCTGTATTAGAAGGGCCGGCCCTTCCATTGTTCCAAGGTACCTCCGGAGGGCCCTTCTATTACAGGGGCCCTTCAATTAGAGGGGGCTCTTCTATTCTTCCAGCCAGTTTTTTTTCCGAAATTTAGCATAGAAAAACTCGACGAATTCACGCAAATCTGCCGATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAACCTCTATTAAATTGTGGAGTTCCCGAAATATTTTCCACTGAAAAAGAACAGAAATTTTCTGATCTTAAAACACATTTTGAAGGGG</canonical_amplicon>
		<polymorphic_amplicon>CTGTCGACAATGTGAGTTTTAATATACCGTAAAACCTGTATTAGAAGGGCCGGCCCTTCYATTGTTCCAAGGTACCTCCGGAGGGCCCTTCTATTACAGGGGCCCTTCAATTAGAGGGGGCTCTTCTATTCTTCCAGCCAGTTTTTTTTCCGAAATTTAGCATAGAAAAACTCGACGAATTCACGCAAATCTGCCGATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAACCTCTATTAAATTGTGGAGTTCCCGAAATATTTTCCACTGAAAAAGAACAGAAATTTTCTGATCTTAAAACACATTTTGAAGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31482</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>92981</contig_pos>
        <strand></strand>
        <context>attttcTGAT[C/T]TTAAAACACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGGAGTTCCCGAAATATTTTCCACTGAAAAAGAACAGAAATTTTCTGAT</left_flank>
        <right_flank>TTAAAACACATTTTGAAGGGGGTCCTTCTTCACAAAGGGTCCTTCTATTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTCCGATGGAAGCCCACCAAAAAATTTCAACTTTGAGCTCGGGTGGGCTTATAGGGATTACGGTAAATAGAAAACAAATTTCAGCGAGAAGAGCAAAGCGCATGGGTTACGGTTTTTGGACAAGTGTGCTATGGTTTGTTCTTGGAAGCGTACGACAAGCTTACCCAACTTCCCAGTATTGCAGAAACTGTCGACAATGTGAGTTTTAATATACCGTAAAACCTGTATTAGAAGGGCCGGCCCTTCCATTGTTCCAAGGTACCTCCGGAGGGCCCTTCTATTACAGGGGCCCTTCAATTAGAGGGGGCTCTTCTATTCTTCCAGCCAGTTTTTTTTCCGAAATTTAGCATAGAAAAACTCGACGAATTCACGCAAATCTGCCGATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAACCTCTATTAAATTGTGGAGTTCCCGAAATATTTTCCACTGAAAAAGAACAGAAATTTTCTGATCTTAAAACACATTTTGAAGGGGGTCCTTCTTCACAAAGGGTCCTTCTATTACGGGGGCCCTTCTATTACAGGGGGACCATCTATTTTTCCGAGCCCCTCTCGGAGGGCCCTTATATTAGAGGGGCCTTTCTATTAAAGGGGCCCTTCTAATACAGGTTTTACGGTATCCAACTCAATGTATAACAAAAAAAGTTTTTTTTTTCTCATTCAGGTGGCCCGGAACCTTGCTATCGAAAATAACTTGTCTGCTGGTCTGAAAATTCCACGAGTTCCAGTAAGTCGGTTGAGAAGATTCAATTAAAAGCATCATGAATTTCAGAAATACGTTCATGACTACTTGAATCAGTTTCTTTCGGAAAGGAAAGGAAACATCATGGATTTCGACAAGAAATTTTTGTCGGACCTATTCCGAGGTGTGACGTCGAAACATAGCATTTATAATCACTTGAAAAGGCAAGGGATGAAACAAGAAAGTTGGGTTAAGTAAGTTTAGAAAATATA</canonical>
            <polymorphic>TCCTCCGATGGAAGCCCACCAAAAAATTTCAACTTTGAGCTCGGGTGGGCTTATAGGGATTACGGTAAATAGAAAACAAATTTCAGCGAGAAGAGCAAAGCGCATGGGTTACGGTTTTTGGACAAGTGTGCTATGGTTTGTTCTTGGAAGCGTACGACAAGCTTACCCAACTTCCCAGTATTGCAGAAACTGTCGACAATGTGAGTTTTAATATACCGTAAAACCTGTATTAGAAGGGCCGGCCCTTCCATTGTTCCAAGGTACCTCCGGAGGGCCCTTCTATTACAGGGGCCCTTCAATTAGAGGGGGCTCTTCTATTCTTCCAGCCAGTTTTTTTTCCGAAATTTAGCATAGAAAAACTCGACGAATTCACGCAAATCTGCCGATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAACCTCTATTAAATTGTGGAGTTCCCGAAATATTTTCCACTGAAAAAGAACAGAAATTTTCTGATYTTAAAACACATTTTGAAGGGGGTCCTTCTTCACAAAGGGTCCTTCTATTACGGGGGCCCTTCTATTACAGGGGGACCATCTATTTTTCCGAGCCCCTCTCGGAGGGCCCTTATATTAGAGGGGCCTTTCTATTAAAGGGGCCCTTCTAATACAGGTTTTACGGTATCCAACTCAATGTATAACAAAAAAAGTTTTTTTTTTCTCATTCAGGTGGCCCGGAACCTTGCTATCGAAAATAACTTGTCTGCTGGTCTGAAAATTCCACGAGTTCCAGTAAGTCGGTTGAGAAGATTCAATTAAAAGCATCATGAATTTCAGAAATACGTTCATGACTACTTGAATCAGTTTCTTTCGGAAAGGAAAGGAAACATCATGGATTTCGACAAGAAATTTTTGTCGGACCTATTCCGAGGTGTGACGTCGAAACATAGCATTTATAATCACTTGAAAAGGCAAGGGATGAAACAAGAAAGTTGGGTTAAGTAAGTTTAGAAAATATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTCGACAATGTGAGTTTTAAT</pcr_primer_p1>
		<pcr_primer_p2>AGTTATTTTCGATAGCAAGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>552</pcr_amplicon_size>
		<canonical_amplicon>CTGTCGACAATGTGAGTTTTAATATACCGTAAAACCTGTATTAGAAGGGCCGGCCCTTCCATTGTTCCAAGGTACCTCCGGAGGGCCCTTCTATTACAGGGGCCCTTCAATTAGAGGGGGCTCTTCTATTCTTCCAGCCAGTTTTTTTTCCGAAATTTAGCATAGAAAAACTCGACGAATTCACGCAAATCTGCCGATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAACCTCTATTAAATTGTGGAGTTCCCGAAATATTTTCCACTGAAAAAGAACAGAAATTTTCTGATCTTAAAACACATTTTGAAGGGGGTCCTTCTTCACAAAGGGTCCTTCTATTACGGGGGCCCTTCTATTACAGGGGGACCATCTATTTTTCCGAGCCCCTCTCGGAGGGCCCTTATATTAGAGGGGCCTTTCTATTAAAGGGGCCCTTCTAATACAGGTTTTACGGTATCCAACTCAATGTATAACAAAAAAAGTTTTTTTTTTCTCATTCAGGTGGCCCGGAACCTTGCTATCGAAAATAACT</canonical_amplicon>
		<polymorphic_amplicon>CTGTCGACAATGTGAGTTTTAATATACCGTAAAACCTGTATTAGAAGGGCCGGCCCTTCCATTGTTCCAAGGTACCTCCGGAGGGCCCTTCTATTACAGGGGCCCTTCAATTAGAGGGGGCTCTTCTATTCTTCCAGCCAGTTTTTTTTCCGAAATTTAGCATAGAAAAACTCGACGAATTCACGCAAATCTGCCGATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAACCTCTATTAAATTGTGGAGTTCCCGAAATATTTTCCACTGAAAAAGAACAGAAATTTTCTGATYTTAAAACACATTTTGAAGGGGGTCCTTCTTCACAAAGGGTCCTTCTATTACGGGGGCCCTTCTATTACAGGGGGACCATCTATTTTTCCGAGCCCCTCTCGGAGGGCCCTTATATTAGAGGGGCCTTTCTATTAAAGGGGCCCTTCTAATACAGGTTTTACGGTATCCAACTCAATGTATAACAAAAAAAGTTTTTTTTTTCTCATTCAGGTGGCCCGGAACCTTGCTATCGAAAATAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31483</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>93101</contig_pos>
        <strand></strand>
        <context>ttatattaga[G/A]gggcctttct</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGGGGACCATCTATTTTTCCGAGCCCCTCTCGGAGGGCCCTTATATTAGA</left_flank>
        <right_flank>GGGCCTTTCTATTAAAGGGGCCCTTCTAATACAGGTTTTACGGTATCCAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACAAGTGTGCTATGGTTTGTTCTTGGAAGCGTACGACAAGCTTACCCAACTTCCCAGTATTGCAGAAACTGTCGACAATGTGAGTTTTAATATACCGTAAAACCTGTATTAGAAGGGCCGGCCCTTCCATTGTTCCAAGGTACCTCCGGAGGGCCCTTCTATTACAGGGGCCCTTCAATTAGAGGGGGCTCTTCTATTCTTCCAGCCAGTTTTTTTTCCGAAATTTAGCATAGAAAAACTCGACGAATTCACGCAAATCTGCCGATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAACCTCTATTAAATTGTGGAGTTCCCGAAATATTTTCCACTGAAAAAGAACAGAAATTTTCTGATCTTAAAACACATTTTGAAGGGGGTCCTTCTTCACAAAGGGTCCTTCTATTACGGGGGCCCTTCTATTACAGGGGGACCATCTATTTTTCCGAGCCCCTCTCGGAGGGCCCTTATATTAGAGGGGCCTTTCTATTAAAGGGGCCCTTCTAATACAGGTTTTACGGTATCCAACTCAATGTATAACAAAAAAAGTTTTTTTTTTCTCATTCAGGTGGCCCGGAACCTTGCTATCGAAAATAACTTGTCTGCTGGTCTGAAAATTCCACGAGTTCCAGTAAGTCGGTTGAGAAGATTCAATTAAAAGCATCATGAATTTCAGAAATACGTTCATGACTACTTGAATCAGTTTCTTTCGGAAAGGAAAGGAAACATCATGGATTTCGACAAGAAATTTTTGTCGGACCTATTCCGAGGTGTGACGTCGAAACATAGCATTTATAATCACTTGAAAAGGCAAGGGATGAAACAAGAAAGTTGGGTTAAGTAAGTTTAGAAAATATATAAGCGATTAGAATATGTTTTTGTTTGGTTTTCAGTATAGATCCCGAGTCAGCTGTGGAAGAATGAAGCTATGCGAGAACGAGAAGAAATATTAACTTCCTGAATTCAAATGCTGTCTTC</canonical>
            <polymorphic>GACAAGTGTGCTATGGTTTGTTCTTGGAAGCGTACGACAAGCTTACCCAACTTCCCAGTATTGCAGAAACTGTCGACAATGTGAGTTTTAATATACCGTAAAACCTGTATTAGAAGGGCCGGCCCTTCCATTGTTCCAAGGTACCTCCGGAGGGCCCTTCTATTACAGGGGCCCTTCAATTAGAGGGGGCTCTTCTATTCTTCCAGCCAGTTTTTTTTCCGAAATTTAGCATAGAAAAACTCGACGAATTCACGCAAATCTGCCGATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAACCTCTATTAAATTGTGGAGTTCCCGAAATATTTTCCACTGAAAAAGAACAGAAATTTTCTGATCTTAAAACACATTTTGAAGGGGGTCCTTCTTCACAAAGGGTCCTTCTATTACGGGGGCCCTTCTATTACAGGGGGACCATCTATTTTTCCGAGCCCCTCTCGGAGGGCCCTTATATTAGARGGGCCTTTCTATTAAAGGGGCCCTTCTAATACAGGTTTTACGGTATCCAACTCAATGTATAACAAAAAAAGTTTTTTTTTTCTCATTCAGGTGGCCCGGAACCTTGCTATCGAAAATAACTTGTCTGCTGGTCTGAAAATTCCACGAGTTCCAGTAAGTCGGTTGAGAAGATTCAATTAAAAGCATCATGAATTTCAGAAATACGTTCATGACTACTTGAATCAGTTTCTTTCGGAAAGGAAAGGAAACATCATGGATTTCGACAAGAAATTTTTGTCGGACCTATTCCGAGGTGTGACGTCGAAACATAGCATTTATAATCACTTGAAAAGGCAAGGGATGAAACAAGAAAGTTGGGTTAAGTAAGTTTAGAAAATATATAAGCGATTAGAATATGTTTTTGTTTGGTTTTCAGTATAGATCCCGAGTCAGCTGTGGAAGAATGAAGCTATGCGAGAACGAGAAGAAATATTAACTTCCTGAATTCAAATGCTGTCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>400 232 142 81 32 19 17 17 16 16 16 12</canonical_bands>
                <polymorphic_bands>400 232 142 81 33 32 19 17 16 16 12</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>482 232 152 50 17 17 17 17 16</canonical_bands>
                <polymorphic_bands>482 232 152 50 34 17 17 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTCGACAATGTGAGTTTTAAT</pcr_primer_p1>
		<pcr_primer_p2>AGTTATTTTCGATAGCAAGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>552</pcr_amplicon_size>
		<canonical_amplicon>CTGTCGACAATGTGAGTTTTAATATACCGTAAAACCTGTATTAGAAGGGCCGGCCCTTCCATTGTTCCAAGGTACCTCCGGAGGGCCCTTCTATTACAGGGGCCCTTCAATTAGAGGGGGCTCTTCTATTCTTCCAGCCAGTTTTTTTTCCGAAATTTAGCATAGAAAAACTCGACGAATTCACGCAAATCTGCCGATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAACCTCTATTAAATTGTGGAGTTCCCGAAATATTTTCCACTGAAAAAGAACAGAAATTTTCTGATCTTAAAACACATTTTGAAGGGGGTCCTTCTTCACAAAGGGTCCTTCTATTACGGGGGCCCTTCTATTACAGGGGGACCATCTATTTTTCCGAGCCCCTCTCGGAGGGCCCTTATATTAGAGGGGCCTTTCTATTAAAGGGGCCCTTCTAATACAGGTTTTACGGTATCCAACTCAATGTATAACAAAAAAAGTTTTTTTTTTCTCATTCAGGTGGCCCGGAACCTTGCTATCGAAAATAACT</canonical_amplicon>
		<polymorphic_amplicon>CTGTCGACAATGTGAGTTTTAATATACCGTAAAACCTGTATTAGAAGGGCCGGCCCTTCCATTGTTCCAAGGTACCTCCGGAGGGCCCTTCTATTACAGGGGCCCTTCAATTAGAGGGGGCTCTTCTATTCTTCCAGCCAGTTTTTTTTCCGAAATTTAGCATAGAAAAACTCGACGAATTCACGCAAATCTGCCGATTTCACCAAAATTTAGCAAGATTTTCATCGAAAAATAGAGTTTCAACAAACCTCTATTAAATTGTGGAGTTCCCGAAATATTTTCCACTGAAAAAGAACAGAAATTTTCTGATCTTAAAACACATTTTGAAGGGGGTCCTTCTTCACAAAGGGTCCTTCTATTACGGGGGCCCTTCTATTACAGGGGGACCATCTATTTTTCCGAGCCCCTCTCGGAGGGCCCTTATATTAGARGGGCCTTTCTATTAAAGGGGCCCTTCTAATACAGGTTTTACGGTATCCAACTCAATGTATAACAAAAAAAGTTTTTTTTTTCTCATTCAGGTGGCCCGGAACCTTGCTATCGAAAATAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31484</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>94771</contig_pos>
        <strand>+</strand>
        <context>GAACTCGTGG[A/G]ATTTTCAGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGG</left_flank>
        <right_flank>ATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATCAGAAGTGTTTTGTCAGCTTACACACTTCGATTTCTGCATAAGAGCCAAGAAAAATTAGTTCAAATTTGAGAGTGTGGGGGCCCTTCAAATACAGCTTCTACGTATTATTTTTCAGATTCCCGAAATGGTGGTGAAGCCGTTTGATATCGAGGGGTCCGCTTATTACAATCCAGAACTTTCGCTCAAGGATGAAAAGGTTTCTTTAAAATCGGGATCTATTCTGAAAACCAAACAAAAGCATATTCTAATCGCTTATATATTTTCTAAACTTACTTAACTCAACTTCCTTGTTTCATCCCTTGCTTTTTCAAGTGATTATAAATGCTATGCTTCGACGTCACACCTCGGAATAGGTCCGACAAAAATTTCTTGTCGAAATCCATGATGTTTCCTTTCCTTTCCGAAAGAAACTGATTCAAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAGAATTATCAGAGAAATGTGGCAACGGAGCAACAAAACGATCCCAAAAATTTGTATATAATTTCAAAATTACAAAAAACGATCAAGATGTTCAGGAAAAAAAAAGTATCTTAAAACCATTATAATAATTTTCTTCAATCCCATTTGTCGAAAATAGTCTTCCCGCCAGAAAACACAGGGAATCGAGCATCAAAGCTTGTGAAATCCCAATTAAGTCCCTCGAAAATTTTCTTGTTCGTGTGCTTGAATCTCATTTGATAGCTCCTTTT</canonical>
            <polymorphic>ATATCAGAAGTGTTTTGTCAGCTTACACACTTCGATTTCTGCATAAGAGCCAAGAAAAATTAGTTCAAATTTGAGAGTGTGGGGGCCCTTCAAATACAGCTTCTACGTATTATTTTTCAGATTCCCGAAATGGTGGTGAAGCCGTTTGATATCGAGGGGTCCGCTTATTACAATCCAGAACTTTCGCTCAAGGATGAAAAGGTTTCTTTAAAATCGGGATCTATTCTGAAAACCAAACAAAAGCATATTCTAATCGCTTATATATTTTCTAAACTTACTTAACTCAACTTCCTTGTTTCATCCCTTGCTTTTTCAAGTGATTATAAATGCTATGCTTCGACGTCACACCTCGGAATAGGTCCGACAAAAATTTCTTGTCGAAATCCATGATGTTTCCTTTCCTTTCCGAAAGAAACTGATTCAAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGRATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAGAATTATCAGAGAAATGTGGCAACGGAGCAACAAAACGATCCCAAAAATTTGTATATAATTTCAAAATTACAAAAAACGATCAAGATGTTCAGGAAAAAAAAAGTATCTTAAAACCATTATAATAATTTTCTTCAATCCCATTTGTCGAAAATAGTCTTCCCGCCAGAAAACACAGGGAATCGAGCATCAAAGCTTGTGAAATCCCAATTAAGTCCCTCGAAAATTTTCTTGTTCGTGTGCTTGAATCTCATTTGATAGCTCCTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>301 280 176 78 67 45 32 21</canonical_bands>
                <polymorphic_bands>312 301 176 78 67 45 21</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>301 147 82 78 59 57 51 45 45 37 32 16 16 11 10 8 5</canonical_bands>
                <polymorphic_bands>301 179 82 78 59 57 51 45 45 37 16 16 11 10 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTAGTCATGAACGCATTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTCTGTTTTAGGGAAAACAATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAA</canonical_amplicon>
		<polymorphic_amplicon>AAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGRATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31485</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>94803</contig_pos>
        <strand>+</strand>
        <context>TTATTTTCGA[C/T]AGCAAGGTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGA</left_flank>
        <right_flank>AGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTAT</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATTTCTGCATAAGAGCCAAGAAAAATTAGTTCAAATTTGAGAGTGTGGGGGCCCTTCAAATACAGCTTCTACGTATTATTTTTCAGATTCCCGAAATGGTGGTGAAGCCGTTTGATATCGAGGGGTCCGCTTATTACAATCCAGAACTTTCGCTCAAGGATGAAAAGGTTTCTTTAAAATCGGGATCTATTCTGAAAACCAAACAAAAGCATATTCTAATCGCTTATATATTTTCTAAACTTACTTAACTCAACTTCCTTGTTTCATCCCTTGCTTTTTCAAGTGATTATAAATGCTATGCTTCGACGTCACACCTCGGAATAGGTCCGACAAAAATTTCTTGTCGAAATCCATGATGTTTCCTTTCCTTTCCGAAAGAAACTGATTCAAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAGAATTATCAGAGAAATGTGGCAACGGAGCAACAAAACGATCCCAAAAATTTGTATATAATTTCAAAATTACAAAAAACGATCAAGATGTTCAGGAAAAAAAAAGTATCTTAAAACCATTATAATAATTTTCTTCAATCCCATTTGTCGAAAATAGTCTTCCCGCCAGAAAACACAGGGAATCGAGCATCAAAGCTTGTGAAATCCCAATTAAGTCCCTCGAAAATTTTCTTGTTCGTGTGCTTGAATCTCATTTGATAGCTCCTTTTTAAATTTCCCAAAAGAAAATTTATGAGTCGCT</canonical>
            <polymorphic>CGATTTCTGCATAAGAGCCAAGAAAAATTAGTTCAAATTTGAGAGTGTGGGGGCCCTTCAAATACAGCTTCTACGTATTATTTTTCAGATTCCCGAAATGGTGGTGAAGCCGTTTGATATCGAGGGGTCCGCTTATTACAATCCAGAACTTTCGCTCAAGGATGAAAAGGTTTCTTTAAAATCGGGATCTATTCTGAAAACCAAACAAAAGCATATTCTAATCGCTTATATATTTTCTAAACTTACTTAACTCAACTTCCTTGTTTCATCCCTTGCTTTTTCAAGTGATTATAAATGCTATGCTTCGACGTCACACCTCGGAATAGGTCCGACAAAAATTTCTTGTCGAAATCCATGATGTTTCCTTTCCTTTCCGAAAGAAACTGATTCAAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGAYAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAGAATTATCAGAGAAATGTGGCAACGGAGCAACAAAACGATCCCAAAAATTTGTATATAATTTCAAAATTACAAAAAACGATCAAGATGTTCAGGAAAAAAAAAGTATCTTAAAACCATTATAATAATTTTCTTCAATCCCATTTGTCGAAAATAGTCTTCCCGCCAGAAAACACAGGGAATCGAGCATCAAAGCTTGTGAAATCCCAATTAAGTCCCTCGAAAATTTTCTTGTTCGTGTGCTTGAATCTCATTTGATAGCTCCTTTTTAAATTTCCCAAAAGAAAATTTATGAGTCGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTAGTCATGAACGCATTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTCTGTTTTAGGGAAAACAATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAA</canonical_amplicon>
		<polymorphic_amplicon>AAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGAYAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31486</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>94840</contig_pos>
        <strand>+</strand>
        <context>GAAAAAAACA[A/C]YTTTTTTTST</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACA</left_flank>
        <right_flank>CTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAGAGTGTGGGGGCCCTTCAAATACAGCTTCTACGTATTATTTTTCAGATTCCCGAAATGGTGGTGAAGCCGTTTGATATCGAGGGGTCCGCTTATTACAATCCAGAACTTTCGCTCAAGGATGAAAAGGTTTCTTTAAAATCGGGATCTATTCTGAAAACCAAACAAAAGCATATTCTAATCGCTTATATATTTTCTAAACTTACTTAACTCAACTTCCTTGTTTCATCCCTTGCTTTTTCAAGTGATTATAAATGCTATGCTTCGACGTCACACCTCGGAATAGGTCCGACAAAAATTTCTTGTCGAAATCCATGATGTTTCCTTTCCTTTCCGAAAGAAACTGATTCAAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAGAATTATCAGAGAAATGTGGCAACGGAGCAACAAAACGATCCCAAAAATTTGTATATAATTTCAAAATTACAAAAAACGATCAAGATGTTCAGGAAAAAAAAAGTATCTTAAAACCATTATAATAATTTTCTTCAATCCCATTTGTCGAAAATAGTCTTCCCGCCAGAAAACACAGGGAATCGAGCATCAAAGCTTGTGAAATCCCAATTAAGTCCCTCGAAAATTTTCTTGTTCGTGTGCTTGAATCTCATTTGATAGCTCCTTTTTAAATTTCCCAAAAGAAAATTTATGAGTCGCTTATCCAACTCCAATCCCGTTTTATCTTTGATTTTCGG</canonical>
            <polymorphic>TTTGAGAGTGTGGGGGCCCTTCAAATACAGCTTCTACGTATTATTTTTCAGATTCCCGAAATGGTGGTGAAGCCGTTTGATATCGAGGGGTCCGCTTATTACAATCCAGAACTTTCGCTCAAGGATGAAAAGGTTTCTTTAAAATCGGGATCTATTCTGAAAACCAAACAAAAGCATATTCTAATCGCTTATATATTTTCTAAACTTACTTAACTCAACTTCCTTGTTTCATCCCTTGCTTTTTCAAGTGATTATAAATGCTATGCTTCGACGTCACACCTCGGAATAGGTCCGACAAAAATTTCTTGTCGAAATCCATGATGTTTCCTTTCCTTTCCGAAAGAAACTGATTCAAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAMCTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAGAATTATCAGAGAAATGTGGCAACGGAGCAACAAAACGATCCCAAAAATTTGTATATAATTTCAAAATTACAAAAAACGATCAAGATGTTCAGGAAAAAAAAAGTATCTTAAAACCATTATAATAATTTTCTTCAATCCCATTTGTCGAAAATAGTCTTCCCGCCAGAAAACACAGGGAATCGAGCATCAAAGCTTGTGAAATCCCAATTAAGTCCCTCGAAAATTTTCTTGTTCGTGTGCTTGAATCTCATTTGATAGCTCCTTTTTAAATTTCCCAAAAGAAAATTTATGAGTCGCTTATCCAACTCCAATCCCGTTTTATCTTTGATTTTCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTAGTCATGAACGCATTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTCTGTTTTAGGGAAAACAATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAA</canonical_amplicon>
		<polymorphic_amplicon>AAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAMCTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31487</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>94841</contig_pos>
        <strand>+</strand>
        <context>AAAAAAACAM[C/T]TTTTTTTSTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAA</left_flank>
        <right_flank>TTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAGAGTGTGGGGGCCCTTCAAATACAGCTTCTACGTATTATTTTTCAGATTCCCGAAATGGTGGTGAAGCCGTTTGATATCGAGGGGTCCGCTTATTACAATCCAGAACTTTCGCTCAAGGATGAAAAGGTTTCTTTAAAATCGGGATCTATTCTGAAAACCAAACAAAAGCATATTCTAATCGCTTATATATTTTCTAAACTTACTTAACTCAACTTCCTTGTTTCATCCCTTGCTTTTTCAAGTGATTATAAATGCTATGCTTCGACGTCACACCTCGGAATAGGTCCGACAAAAATTTCTTGTCGAAATCCATGATGTTTCCTTTCCTTTCCGAAAGAAACTGATTCAAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAGAATTATCAGAGAAATGTGGCAACGGAGCAACAAAACGATCCCAAAAATTTGTATATAATTTCAAAATTACAAAAAACGATCAAGATGTTCAGGAAAAAAAAAGTATCTTAAAACCATTATAATAATTTTCTTCAATCCCATTTGTCGAAAATAGTCTTCCCGCCAGAAAACACAGGGAATCGAGCATCAAAGCTTGTGAAATCCCAATTAAGTCCCTCGAAAATTTTCTTGTTCGTGTGCTTGAATCTCATTTGATAGCTCCTTTTTAAATTTCCCAAAAGAAAATTTATGAGTCGCTTATCCAACTCCAATCCCGTTTTATCTTTGATTTTCGGT</canonical>
            <polymorphic>TTGAGAGTGTGGGGGCCCTTCAAATACAGCTTCTACGTATTATTTTTCAGATTCCCGAAATGGTGGTGAAGCCGTTTGATATCGAGGGGTCCGCTTATTACAATCCAGAACTTTCGCTCAAGGATGAAAAGGTTTCTTTAAAATCGGGATCTATTCTGAAAACCAAACAAAAGCATATTCTAATCGCTTATATATTTTCTAAACTTACTTAACTCAACTTCCTTGTTTCATCCCTTGCTTTTTCAAGTGATTATAAATGCTATGCTTCGACGTCACACCTCGGAATAGGTCCGACAAAAATTTCTTGTCGAAATCCATGATGTTTCCTTTCCTTTCCGAAAGAAACTGATTCAAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAAYTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAGAATTATCAGAGAAATGTGGCAACGGAGCAACAAAACGATCCCAAAAATTTGTATATAATTTCAAAATTACAAAAAACGATCAAGATGTTCAGGAAAAAAAAAGTATCTTAAAACCATTATAATAATTTTCTTCAATCCCATTTGTCGAAAATAGTCTTCCCGCCAGAAAACACAGGGAATCGAGCATCAAAGCTTGTGAAATCCCAATTAAGTCCCTCGAAAATTTTCTTGTTCGTGTGCTTGAATCTCATTTGATAGCTCCTTTTTAAATTTCCCAAAAGAAAATTTATGAGTCGCTTATCCAACTCCAATCCCGTTTTATCTTTGATTTTCGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTAGTCATGAACGCATTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTCTGTTTTAGGGAAAACAATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAA</canonical_amplicon>
		<polymorphic_amplicon>AAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAAYTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31488</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>94849</contig_pos>
        <strand>+</strand>
        <context>AMYTTTTTTT[C/G]TTATACATTG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTT</left_flank>
        <right_flank>TTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGGGGCCCTTCAAATACAGCTTCTACGTATTATTTTTCAGATTCCCGAAATGGTGGTGAAGCCGTTTGATATCGAGGGGTCCGCTTATTACAATCCAGAACTTTCGCTCAAGGATGAAAAGGTTTCTTTAAAATCGGGATCTATTCTGAAAACCAAACAAAAGCATATTCTAATCGCTTATATATTTTCTAAACTTACTTAACTCAACTTCCTTGTTTCATCCCTTGCTTTTTCAAGTGATTATAAATGCTATGCTTCGACGTCACACCTCGGAATAGGTCCGACAAAAATTTCTTGTCGAAATCCATGATGTTTCCTTTCCTTTCCGAAAGAAACTGATTCAAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAGAATTATCAGAGAAATGTGGCAACGGAGCAACAAAACGATCCCAAAAATTTGTATATAATTTCAAAATTACAAAAAACGATCAAGATGTTCAGGAAAAAAAAAGTATCTTAAAACCATTATAATAATTTTCTTCAATCCCATTTGTCGAAAATAGTCTTCCCGCCAGAAAACACAGGGAATCGAGCATCAAAGCTTGTGAAATCCCAATTAAGTCCCTCGAAAATTTTCTTGTTCGTGTGCTTGAATCTCATTTGATAGCTCCTTTTTAAATTTCCCAAAAGAAAATTTATGAGTCGCTTATCCAACTCCAATCCCGTTTTATCTTTGATTTTCGGTAGCCATCC</canonical>
            <polymorphic>GTGGGGGCCCTTCAAATACAGCTTCTACGTATTATTTTTCAGATTCCCGAAATGGTGGTGAAGCCGTTTGATATCGAGGGGTCCGCTTATTACAATCCAGAACTTTCGCTCAAGGATGAAAAGGTTTCTTTAAAATCGGGATCTATTCTGAAAACCAAACAAAAGCATATTCTAATCGCTTATATATTTTCTAAACTTACTTAACTCAACTTCCTTGTTTCATCCCTTGCTTTTTCAAGTGATTATAAATGCTATGCTTCGACGTCACACCTCGGAATAGGTCCGACAAAAATTTCTTGTCGAAATCCATGATGTTTCCTTTCCTTTCCGAAAGAAACTGATTCAAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTSTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAGAATTATCAGAGAAATGTGGCAACGGAGCAACAAAACGATCCCAAAAATTTGTATATAATTTCAAAATTACAAAAAACGATCAAGATGTTCAGGAAAAAAAAAGTATCTTAAAACCATTATAATAATTTTCTTCAATCCCATTTGTCGAAAATAGTCTTCCCGCCAGAAAACACAGGGAATCGAGCATCAAAGCTTGTGAAATCCCAATTAAGTCCCTCGAAAATTTTCTTGTTCGTGTGCTTGAATCTCATTTGATAGCTCCTTTTTAAATTTCCCAAAAGAAAATTTATGAGTCGCTTATCCAACTCCAATCCCGTTTTATCTTTGATTTTCGGTAGCCATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTAGTCATGAACGCATTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTCTGTTTTAGGGAAAACAATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAA</canonical_amplicon>
		<polymorphic_amplicon>AAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTSTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31489</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>94903</contig_pos>
        <strand>+</strand>
        <context>ccCTTTAATA[A/T]TTYCCTTWTY</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATA</left_flank>
        <right_flank>TTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGGTGAAGCCGTTTGATATCGAGGGGTCCGCTTATTACAATCCAGAACTTTCGCTCAAGGATGAAAAGGTTTCTTTAAAATCGGGATCTATTCTGAAAACCAAACAAAAGCATATTCTAATCGCTTATATATTTTCTAAACTTACTTAACTCAACTTCCTTGTTTCATCCCTTGCTTTTTCAAGTGATTATAAATGCTATGCTTCGACGTCACACCTCGGAATAGGTCCGACAAAAATTTCTTGTCGAAATCCATGATGTTTCCTTTCCTTTCCGAAAGAAACTGATTCAAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAGAATTATCAGAGAAATGTGGCAACGGAGCAACAAAACGATCCCAAAAATTTGTATATAATTTCAAAATTACAAAAAACGATCAAGATGTTCAGGAAAAAAAAAGTATCTTAAAACCATTATAATAATTTTCTTCAATCCCATTTGTCGAAAATAGTCTTCCCGCCAGAAAACACAGGGAATCGAGCATCAAAGCTTGTGAAATCCCAATTAAGTCCCTCGAAAATTTTCTTGTTCGTGTGCTTGAATCTCATTTGATAGCTCCTTTTTAAATTTCCCAAAAGAAAATTTATGAGTCGCTTATCCAACTCCAATCCCGTTTTATCTTTGATTTTCGGTAGCCATCCGATTGATGGCTACTCTGCGTGTCGCATAAATGTCAACTTCGATGTTAACGAACT</canonical>
            <polymorphic>GTGGTGAAGCCGTTTGATATCGAGGGGTCCGCTTATTACAATCCAGAACTTTCGCTCAAGGATGAAAAGGTTTCTTTAAAATCGGGATCTATTCTGAAAACCAAACAAAAGCATATTCTAATCGCTTATATATTTTCTAAACTTACTTAACTCAACTTCCTTGTTTCATCCCTTGCTTTTTCAAGTGATTATAAATGCTATGCTTCGACGTCACACCTCGGAATAGGTCCGACAAAAATTTCTTGTCGAAATCCATGATGTTTCCTTTCCTTTCCGAAAGAAACTGATTCAAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAWTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAGAATTATCAGAGAAATGTGGCAACGGAGCAACAAAACGATCCCAAAAATTTGTATATAATTTCAAAATTACAAAAAACGATCAAGATGTTCAGGAAAAAAAAAGTATCTTAAAACCATTATAATAATTTTCTTCAATCCCATTTGTCGAAAATAGTCTTCCCGCCAGAAAACACAGGGAATCGAGCATCAAAGCTTGTGAAATCCCAATTAAGTCCCTCGAAAATTTTCTTGTTCGTGTGCTTGAATCTCATTTGATAGCTCCTTTTTAAATTTCCCAAAAGAAAATTTATGAGTCGCTTATCCAACTCCAATCCCGTTTTATCTTTGATTTTCGGTAGCCATCCGATTGATGGCTACTCTGCGTGTCGCATAAATGTCAACTTCGATGTTAACGAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAACCGACTTACTGGAACT</pcr_primer_p1>
		<pcr_primer_p2>CTTTGATTCTTGTGTTCAAATG</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>CTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAG</canonical_amplicon>
		<polymorphic_amplicon>CTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATAWTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31490</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>94906</contig_pos>
        <strand>+</strand>
        <context>TTTAATAWTT[C/T]CCTTWTYTTW</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTT</left_flank>
        <right_flank>CCTTTTTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGAAGCCGTTTGATATCGAGGGGTCCGCTTATTACAATCCAGAACTTTCGCTCAAGGATGAAAAGGTTTCTTTAAAATCGGGATCTATTCTGAAAACCAAACAAAAGCATATTCTAATCGCTTATATATTTTCTAAACTTACTTAACTCAACTTCCTTGTTTCATCCCTTGCTTTTTCAAGTGATTATAAATGCTATGCTTCGACGTCACACCTCGGAATAGGTCCGACAAAAATTTCTTGTCGAAATCCATGATGTTTCCTTTCCTTTCCGAAAGAAACTGATTCAAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAGAATTATCAGAGAAATGTGGCAACGGAGCAACAAAACGATCCCAAAAATTTGTATATAATTTCAAAATTACAAAAAACGATCAAGATGTTCAGGAAAAAAAAAGTATCTTAAAACCATTATAATAATTTTCTTCAATCCCATTTGTCGAAAATAGTCTTCCCGCCAGAAAACACAGGGAATCGAGCATCAAAGCTTGTGAAATCCCAATTAAGTCCCTCGAAAATTTTCTTGTTCGTGTGCTTGAATCTCATTTGATAGCTCCTTTTTAAATTTCCCAAAAGAAAATTTATGAGTCGCTTATCCAACTCCAATCCCGTTTTATCTTTGATTTTCGGTAGCCATCCGATTGATGGCTACTCTGCGTGTCGCATAAATGTCAACTTCGATGTTAACGAACTTTG</canonical>
            <polymorphic>GTGAAGCCGTTTGATATCGAGGGGTCCGCTTATTACAATCCAGAACTTTCGCTCAAGGATGAAAAGGTTTCTTTAAAATCGGGATCTATTCTGAAAACCAAACAAAAGCATATTCTAATCGCTTATATATTTTCTAAACTTACTTAACTCAACTTCCTTGTTTCATCCCTTGCTTTTTCAAGTGATTATAAATGCTATGCTTCGACGTCACACCTCGGAATAGGTCCGACAAAAATTTCTTGTCGAAATCCATGATGTTTCCTTTCCTTTCCGAAAGAAACTGATTCAAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTYCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAGAATTATCAGAGAAATGTGGCAACGGAGCAACAAAACGATCCCAAAAATTTGTATATAATTTCAAAATTACAAAAAACGATCAAGATGTTCAGGAAAAAAAAAGTATCTTAAAACCATTATAATAATTTTCTTCAATCCCATTTGTCGAAAATAGTCTTCCCGCCAGAAAACACAGGGAATCGAGCATCAAAGCTTGTGAAATCCCAATTAAGTCCCTCGAAAATTTTCTTGTTCGTGTGCTTGAATCTCATTTGATAGCTCCTTTTTAAATTTCCCAAAAGAAAATTTATGAGTCGCTTATCCAACTCCAATCCCGTTTTATCTTTGATTTTCGGTAGCCATCCGATTGATGGCTACTCTGCGTGTCGCATAAATGTCAACTTCGATGTTAACGAACTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAACCGACTTACTGGAACT</pcr_primer_p1>
		<pcr_primer_p2>CTTTGATTCTTGTGTTCAAATG</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>CTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAG</canonical_amplicon>
		<polymorphic_amplicon>CTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTYCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31491</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>94911</contig_pos>
        <strand>+</strand>
        <context>TAWTTYCCTT[A/T]TYTTWAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTT</left_flank>
        <right_flank>TTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCGTTTGATATCGAGGGGTCCGCTTATTACAATCCAGAACTTTCGCTCAAGGATGAAAAGGTTTCTTTAAAATCGGGATCTATTCTGAAAACCAAACAAAAGCATATTCTAATCGCTTATATATTTTCTAAACTTACTTAACTCAACTTCCTTGTTTCATCCCTTGCTTTTTCAAGTGATTATAAATGCTATGCTTCGACGTCACACCTCGGAATAGGTCCGACAAAAATTTCTTGTCGAAATCCATGATGTTTCCTTTCCTTTCCGAAAGAAACTGATTCAAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAGAATTATCAGAGAAATGTGGCAACGGAGCAACAAAACGATCCCAAAAATTTGTATATAATTTCAAAATTACAAAAAACGATCAAGATGTTCAGGAAAAAAAAAGTATCTTAAAACCATTATAATAATTTTCTTCAATCCCATTTGTCGAAAATAGTCTTCCCGCCAGAAAACACAGGGAATCGAGCATCAAAGCTTGTGAAATCCCAATTAAGTCCCTCGAAAATTTTCTTGTTCGTGTGCTTGAATCTCATTTGATAGCTCCTTTTTAAATTTCCCAAAAGAAAATTTATGAGTCGCTTATCCAACTCCAATCCCGTTTTATCTTTGATTTTCGGTAGCCATCCGATTGATGGCTACTCTGCGTGTCGCATAAATGTCAACTTCGATGTTAACGAACTTTGAAAGG</canonical>
            <polymorphic>GCCGTTTGATATCGAGGGGTCCGCTTATTACAATCCAGAACTTTCGCTCAAGGATGAAAAGGTTTCTTTAAAATCGGGATCTATTCTGAAAACCAAACAAAAGCATATTCTAATCGCTTATATATTTTCTAAACTTACTTAACTCAACTTCCTTGTTTCATCCCTTGCTTTTTCAAGTGATTATAAATGCTATGCTTCGACGTCACACCTCGGAATAGGTCCGACAAAAATTTCTTGTCGAAATCCATGATGTTTCCTTTCCTTTCCGAAAGAAACTGATTCAAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTWTTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAGAATTATCAGAGAAATGTGGCAACGGAGCAACAAAACGATCCCAAAAATTTGTATATAATTTCAAAATTACAAAAAACGATCAAGATGTTCAGGAAAAAAAAAGTATCTTAAAACCATTATAATAATTTTCTTCAATCCCATTTGTCGAAAATAGTCTTCCCGCCAGAAAACACAGGGAATCGAGCATCAAAGCTTGTGAAATCCCAATTAAGTCCCTCGAAAATTTTCTTGTTCGTGTGCTTGAATCTCATTTGATAGCTCCTTTTTAAATTTCCCAAAAGAAAATTTATGAGTCGCTTATCCAACTCCAATCCCGTTTTATCTTTGATTTTCGGTAGCCATCCGATTGATGGCTACTCTGCGTGTCGCATAAATGTCAACTTCGATGTTAACGAACTTTGAAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAACCGACTTACTGGAACT</pcr_primer_p1>
		<pcr_primer_p2>CTTTGATTCTTGTGTTCAAATG</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>CTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAG</canonical_amplicon>
		<polymorphic_amplicon>CTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTWTTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31492</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>94913</contig_pos>
        <strand>+</strand>
        <context>WTTYCCTTWT[C/T]TTWAAATTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTT</left_flank>
        <right_flank>TTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTTTGATATCGAGGGGTCCGCTTATTACAATCCAGAACTTTCGCTCAAGGATGAAAAGGTTTCTTTAAAATCGGGATCTATTCTGAAAACCAAACAAAAGCATATTCTAATCGCTTATATATTTTCTAAACTTACTTAACTCAACTTCCTTGTTTCATCCCTTGCTTTTTCAAGTGATTATAAATGCTATGCTTCGACGTCACACCTCGGAATAGGTCCGACAAAAATTTCTTGTCGAAATCCATGATGTTTCCTTTCCTTTCCGAAAGAAACTGATTCAAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAGAATTATCAGAGAAATGTGGCAACGGAGCAACAAAACGATCCCAAAAATTTGTATATAATTTCAAAATTACAAAAAACGATCAAGATGTTCAGGAAAAAAAAAGTATCTTAAAACCATTATAATAATTTTCTTCAATCCCATTTGTCGAAAATAGTCTTCCCGCCAGAAAACACAGGGAATCGAGCATCAAAGCTTGTGAAATCCCAATTAAGTCCCTCGAAAATTTTCTTGTTCGTGTGCTTGAATCTCATTTGATAGCTCCTTTTTAAATTTCCCAAAAGAAAATTTATGAGTCGCTTATCCAACTCCAATCCCGTTTTATCTTTGATTTTCGGTAGCCATCCGATTGATGGCTACTCTGCGTGTCGCATAAATGTCAACTTCGATGTTAACGAACTTTGAAAGGTA</canonical>
            <polymorphic>CGTTTGATATCGAGGGGTCCGCTTATTACAATCCAGAACTTTCGCTCAAGGATGAAAAGGTTTCTTTAAAATCGGGATCTATTCTGAAAACCAAACAAAAGCATATTCTAATCGCTTATATATTTTCTAAACTTACTTAACTCAACTTCCTTGTTTCATCCCTTGCTTTTTCAAGTGATTATAAATGCTATGCTTCGACGTCACACCTCGGAATAGGTCCGACAAAAATTTCTTGTCGAAATCCATGATGTTTCCTTTCCTTTCCGAAAGAAACTGATTCAAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTYTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAGAATTATCAGAGAAATGTGGCAACGGAGCAACAAAACGATCCCAAAAATTTGTATATAATTTCAAAATTACAAAAAACGATCAAGATGTTCAGGAAAAAAAAAGTATCTTAAAACCATTATAATAATTTTCTTCAATCCCATTTGTCGAAAATAGTCTTCCCGCCAGAAAACACAGGGAATCGAGCATCAAAGCTTGTGAAATCCCAATTAAGTCCCTCGAAAATTTTCTTGTTCGTGTGCTTGAATCTCATTTGATAGCTCCTTTTTAAATTTCCCAAAAGAAAATTTATGAGTCGCTTATCCAACTCCAATCCCGTTTTATCTTTGATTTTCGGTAGCCATCCGATTGATGGCTACTCTGCGTGTCGCATAAATGTCAACTTCGATGTTAACGAACTTTGAAAGGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAACCGACTTACTGGAACT</pcr_primer_p1>
		<pcr_primer_p2>CTTTGATTCTTGTGTTCAAATG</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>CTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAG</canonical_amplicon>
		<polymorphic_amplicon>CTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTYTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31493</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>94916</contig_pos>
        <strand>+</strand>
        <context>YCCTTWTYTT[A/T]AAATTGTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTT</left_flank>
        <right_flank>AAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGATATCGAGGGGTCCGCTTATTACAATCCAGAACTTTCGCTCAAGGATGAAAAGGTTTCTTTAAAATCGGGATCTATTCTGAAAACCAAACAAAAGCATATTCTAATCGCTTATATATTTTCTAAACTTACTTAACTCAACTTCCTTGTTTCATCCCTTGCTTTTTCAAGTGATTATAAATGCTATGCTTCGACGTCACACCTCGGAATAGGTCCGACAAAAATTTCTTGTCGAAATCCATGATGTTTCCTTTCCTTTCCGAAAGAAACTGATTCAAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAGAATTATCAGAGAAATGTGGCAACGGAGCAACAAAACGATCCCAAAAATTTGTATATAATTTCAAAATTACAAAAAACGATCAAGATGTTCAGGAAAAAAAAAGTATCTTAAAACCATTATAATAATTTTCTTCAATCCCATTTGTCGAAAATAGTCTTCCCGCCAGAAAACACAGGGAATCGAGCATCAAAGCTTGTGAAATCCCAATTAAGTCCCTCGAAAATTTTCTTGTTCGTGTGCTTGAATCTCATTTGATAGCTCCTTTTTAAATTTCCCAAAAGAAAATTTATGAGTCGCTTATCCAACTCCAATCCCGTTTTATCTTTGATTTTCGGTAGCCATCCGATTGATGGCTACTCTGCGTGTCGCATAAATGTCAACTTCGATGTTAACGAACTTTGAAAGGTACTT</canonical>
            <polymorphic>TTGATATCGAGGGGTCCGCTTATTACAATCCAGAACTTTCGCTCAAGGATGAAAAGGTTTCTTTAAAATCGGGATCTATTCTGAAAACCAAACAAAAGCATATTCTAATCGCTTATATATTTTCTAAACTTACTTAACTCAACTTCCTTGTTTCATCCCTTGCTTTTTCAAGTGATTATAAATGCTATGCTTCGACGTCACACCTCGGAATAGGTCCGACAAAAATTTCTTGTCGAAATCCATGATGTTTCCTTTCCTTTCCGAAAGAAACTGATTCAAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTWAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAGAATTATCAGAGAAATGTGGCAACGGAGCAACAAAACGATCCCAAAAATTTGTATATAATTTCAAAATTACAAAAAACGATCAAGATGTTCAGGAAAAAAAAAGTATCTTAAAACCATTATAATAATTTTCTTCAATCCCATTTGTCGAAAATAGTCTTCCCGCCAGAAAACACAGGGAATCGAGCATCAAAGCTTGTGAAATCCCAATTAAGTCCCTCGAAAATTTTCTTGTTCGTGTGCTTGAATCTCATTTGATAGCTCCTTTTTAAATTTCCCAAAAGAAAATTTATGAGTCGCTTATCCAACTCCAATCCCGTTTTATCTTTGATTTTCGGTAGCCATCCGATTGATGGCTACTCTGCGTGTCGCATAAATGTCAACTTCGATGTTAACGAACTTTGAAAGGTACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>436 356 144 64</canonical_bands>
                <polymorphic_bands>792 144 64</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>198 182 165 123 100 71 63 58 22 18</canonical_bands>
                <polymorphic_bands>216 182 165 123 100 71 63 58 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAACCGACTTACTGGAACT</pcr_primer_p1>
		<pcr_primer_p2>CTTTGATTCTTGTGTTCAAATG</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>CTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAG</canonical_amplicon>
		<polymorphic_amplicon>CTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTWAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31494</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>94973</contig_pos>
        <strand></strand>
        <context>AGGATTTGTA[G/A]AAACACGAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTA</left_flank>
        <right_flank>AAACACGAGGCATTTGAACACAAGAATCAAAGAATTATCAGAGAAATGTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTTTAAAATCGGGATCTATTCTGAAAACCAAACAAAAGCATATTCTAATCGCTTATATATTTTCTAAACTTACTTAACTCAACTTCCTTGTTTCATCCCTTGCTTTTTCAAGTGATTATAAATGCTATGCTTCGACGTCACACCTCGGAATAGGTCCGACAAAAATTTCTTGTCGAAATCCATGATGTTTCCTTTCCTTTCCGAAAGAAACTGATTCAAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAGAATTATCAGAGAAATGTGGCAACGGAGCAACAAAACGATCCCAAAAATTTGTATATAATTTCAAAATTACAAAAAACGATCAAGATGTTCAGGAAAAAAAAAGTATCTTAAAACCATTATAATAATTTTCTTCAATCCCATTTGTCGAAAATAGTCTTCCCGCCAGAAAACACAGGGAATCGAGCATCAAAGCTTGTGAAATCCCAATTAAGTCCCTCGAAAATTTTCTTGTTCGTGTGCTTGAATCTCATTTGATAGCTCCTTTTTAAATTTCCCAAAAGAAAATTTATGAGTCGCTTATCCAACTCCAATCCCGTTTTATCTTTGATTTTCGGTAGCCATCCGATTGATGGCTACTCTGCGTGTCGCATAAATGTCAACTTCGATGTTAACGAACTTTGAAAGGTACTTCTTCAGGTCTCCATAGATACGTGGAAGCTTGTGATCGTCAGAATCTTGTCTTACGCA</canonical>
            <polymorphic>TTTCTTTAAAATCGGGATCTATTCTGAAAACCAAACAAAAGCATATTCTAATCGCTTATATATTTTCTAAACTTACTTAACTCAACTTCCTTGTTTCATCCCTTGCTTTTTCAAGTGATTATAAATGCTATGCTTCGACGTCACACCTCGGAATAGGTCCGACAAAAATTTCTTGTCGAAATCCATGATGTTTCCTTTCCTTTCCGAAAGAAACTGATTCAAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTARAAACACGAGGCATTTGAACACAAGAATCAAAGAATTATCAGAGAAATGTGGCAACGGAGCAACAAAACGATCCCAAAAATTTGTATATAATTTCAAAATTACAAAAAACGATCAAGATGTTCAGGAAAAAAAAAGTATCTTAAAACCATTATAATAATTTTCTTCAATCCCATTTGTCGAAAATAGTCTTCCCGCCAGAAAACACAGGGAATCGAGCATCAAAGCTTGTGAAATCCCAATTAAGTCCCTCGAAAATTTTCTTGTTCGTGTGCTTGAATCTCATTTGATAGCTCCTTTTTAAATTTCCCAAAAGAAAATTTATGAGTCGCTTATCCAACTCCAATCCCGTTTTATCTTTGATTTTCGGTAGCCATCCGATTGATGGCTACTCTGCGTGTCGCATAAATGTCAACTTCGATGTTAACGAACTTTGAAAGGTACTTCTTCAGGTCTCCATAGATACGTGGAAGCTTGTGATCGTCAGAATCTTGTCTTACGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGTTTTCCCTAAAACAGAAG</pcr_primer_p1>
		<pcr_primer_p2>AAATGGGATTGAAGAAAATTATTA</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>AATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAGAATTATCAGAGAAATGTGGCAACGGAGCAACAAAACGATCCCAAAAATTTGTATATAATTTCAAAATTACAAAAAACGATCAAGATGTTCAGGAAAAAAAAAGTATCTTAAAACCATTATAATAATTTTCTTCAATCCCATTT</canonical_amplicon>
		<polymorphic_amplicon>AATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTARAAACACGAGGCATTTGAACACAAGAATCAAAGAATTATCAGAGAAATGTGGCAACGGAGCAACAAAACGATCCCAAAAATTTGTATATAATTTCAAAATTACAAAAAACGATCAAGATGTTCAGGAAAAAAAAAGTATCTTAAAACCATTATAATAATTTTCTTCAATCCCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31495</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>95015</contig_pos>
        <strand>+</strand>
        <context>GAATTATCAG[A/G]GAAATGTGGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAGAATTATCAG</left_flank>
        <right_flank>GAAATGTGGCAACGGAGCAACAAAACGATCCCAAAAATTTGTATATAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATTCTAATCGCTTATATATTTTCTAAACTTACTTAACTCAACTTCCTTGTTTCATCCCTTGCTTTTTCAAGTGATTATAAATGCTATGCTTCGACGTCACACCTCGGAATAGGTCCGACAAAAATTTCTTGTCGAAATCCATGATGTTTCCTTTCCTTTCCGAAAGAAACTGATTCAAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAGAATTATCAGAGAAATGTGGCAACGGAGCAACAAAACGATCCCAAAAATTTGTATATAATTTCAAAATTACAAAAAACGATCAAGATGTTCAGGAAAAAAAAAGTATCTTAAAACCATTATAATAATTTTCTTCAATCCCATTTGTCGAAAATAGTCTTCCCGCCAGAAAACACAGGGAATCGAGCATCAAAGCTTGTGAAATCCCAATTAAGTCCCTCGAAAATTTTCTTGTTCGTGTGCTTGAATCTCATTTGATAGCTCCTTTTTAAATTTCCCAAAAGAAAATTTATGAGTCGCTTATCCAACTCCAATCCCGTTTTATCTTTGATTTTCGGTAGCCATCCGATTGATGGCTACTCTGCGTGTCGCATAAATGTCAACTTCGATGTTAACGAACTTTGAAAGGTACTTCTTCAGGTCTCCATAGATACGTGGAAGCTTGTGATCGTCAGAATCTTGTCTTACGCACTAAAAGTCGGAATTAGGATATCAAAAGATGAATTCAAATAG</canonical>
            <polymorphic>ATATTCTAATCGCTTATATATTTTCTAAACTTACTTAACTCAACTTCCTTGTTTCATCCCTTGCTTTTTCAAGTGATTATAAATGCTATGCTTCGACGTCACACCTCGGAATAGGTCCGACAAAAATTTCTTGTCGAAATCCATGATGTTTCCTTTCCTTTCCGAAAGAAACTGATTCAAGTAGTCATGAACGCATTTCTGAAATTCATGATGCTTTTAATTGAATTTTCTCAACCGACTTACTGGAACTCGTGGAATTTTCAGACCAGCAGACGGGTTATTTTCGATAGCAAGGTTCCGGGCCACCTGAATGAGAAAAAAACAACTTTTTTTGTTATACATTGAGTTGGATACCGTAAAACCTGTATTAGAAGGGCCCCTTTAATATTTCCCTTTTTTTTAAATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAGAATTATCAGRGAAATGTGGCAACGGAGCAACAAAACGATCCCAAAAATTTGTATATAATTTCAAAATTACAAAAAACGATCAAGATGTTCAGGAAAAAAAAAGTATCTTAAAACCATTATAATAATTTTCTTCAATCCCATTTGTCGAAAATAGTCTTCCCGCCAGAAAACACAGGGAATCGAGCATCAAAGCTTGTGAAATCCCAATTAAGTCCCTCGAAAATTTTCTTGTTCGTGTGCTTGAATCTCATTTGATAGCTCCTTTTTAAATTTCCCAAAAGAAAATTTATGAGTCGCTTATCCAACTCCAATCCCGTTTTATCTTTGATTTTCGGTAGCCATCCGATTGATGGCTACTCTGCGTGTCGCATAAATGTCAACTTCGATGTTAACGAACTTTGAAAGGTACTTCTTCAGGTCTCCATAGATACGTGGAAGCTTGTGATCGTCAGAATCTTGTCTTACGCACTAAAAGTCGGAATTAGGATATCAAAAGATGAATTCAAATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>336 235 108 107 63 45 37 32 27 10</canonical_bands>
                <polymorphic_bands>571 108 107 63 45 37 32 27 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGTTTTCCCTAAAACAGAAG</pcr_primer_p1>
		<pcr_primer_p2>AAATGGGATTGAAGAAAATTATTA</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>AATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAGAATTATCAGAGAAATGTGGCAACGGAGCAACAAAACGATCCCAAAAATTTGTATATAATTTCAAAATTACAAAAAACGATCAAGATGTTCAGGAAAAAAAAAGTATCTTAAAACCATTATAATAATTTTCTTCAATCCCATTT</canonical_amplicon>
		<polymorphic_amplicon>AATTGTTTTCCCTAAAACAGAAGAATCGCAAAAAAACAATTCGAAAGGATTTGTAGAAACACGAGGCATTTGAACACAAGAATCAAAGAATTATCAGRGAAATGTGGCAACGGAGCAACAAAACGATCCCAAAAATTTGTATATAATTTCAAAATTACAAAAAACGATCAAGATGTTCAGGAAAAAAAAAGTATCTTAAAACCATTATAATAATTTTCTTCAATCCCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31497</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>98697</contig_pos>
        <strand>-</strand>
        <context>CCTCGTGTTT[A/G]TACAAATCCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACATTTCTCTGATAATTCTTTGATTCTTGTGTTCAAATGCCTCGTGTTT</left_flank>
        <right_flank>TACAAATCCTTTCGAATTGTTTTTTTGCGATTCTTCTGTTTTAGGGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTCTCAAATGGTATTCATTAATTGACAATCCGAATTAGTATTTGCTTCAATCATATCCTGTTCAGTCCATATTCAGTTTTCGAAAAAATTCAAAATTTAAATGAACTTATAATTATGTGACGCAGTGTATAAAATCATCAAAATGAAAAAAAGTTTTTATTCCATTTGAATATTTACAGTACACTTTGAATACACTTTAAATATACAGAACATGAATACGATATAAATTCGGCATTATCTGGAATCGAGATCAGAGAGAAATATCCAAGTTTACTGATTGGTTTTGAACTCCAAAATTCATATACTCGGGTTCCATTTTTAAAAATTCTGCGAAATGAAAATTATTATAATGGTTTTAAGATACTTTTTTTTCCTGAACATCTTGATCGTTTTTTGTAATTTTGAAATTATATACAAATTTTTGGGATTGTTTTGTTGCTCCGTTGCCACATTTCTCTGATAATTCTTTGATTCTTGTGTTCAAATGCCTCGTGTTTCTACAAATCCTTTCGAATTGTTTTTTTGCGATTCTTCTGTTTTAGGGAAAACAATTTTACGACTACAAATTAAAAAAATTTTCAACCAGCCAAACAAGATTTTTTTGTGATCAAAACAGAGCAAAATATAGAAAAACTTTGATCCTTAGATTTTGGATTTAATACAATTTTTCAGACAGAATCTGGTTGATGGTTTTGTTTGTGGCATGAGTGTAGTTCAAGATAATACCATTATAAAACGTTTTGGTGTAAAAAAGAGCAACAGTCAAACCTGTAATAAACGGGCCTCCCGCTGATAAAATGTTGTTTGTCATAATATAAGAAATAGCGATTTTCAAAATTTTTAATTCTCGAAGGAATAAACAAAAATGGTCCAATTTTCTGTAATTCGTCACAGAAAATACTAAACTACTGATAAATGTCATAATCGATGTGTTTTTGTCCAGAAATACTTTATTTCAACGCAATCATGAAAAATATGGTTTTAATTACATTATTTCT</canonical>
            <polymorphic>CAGTCTCAAATGGTATTCATTAATTGACAATCCGAATTAGTATTTGCTTCAATCATATCCTGTTCAGTCCATATTCAGTTTTCGAAAAAATTCAAAATTTAAATGAACTTATAATTATGTGACGCAGTGTATAAAATCATCAAAATGAAAAAAAGTTTTTATTCCATTTGAATATTTACAGTACACTTTGAATACACTTTAAATATACAGAACATGAATACGATATAAATTCGGCATTATCTGGAATCGAGATCAGAGAGAAATATCCAAGTTTACTGATTGGTTTTGAACTCCAAAATTCATATACTCGGGTTCCATTTTTAAAAATTCTGCGAAATGAAAATTATTATAATGGTTTTAAGATACTTTTTTTTCCTGAACATCTTGATCGTTTTTTGTAATTTTGAAATTATATACAAATTTTTGGGATTGTTTTGTTGCTCCGTTGCCACATTTCTCTGATAATTCTTTGATTCTTGTGTTCAAATGCCTCGTGTTTRTACAAATCCTTTCGAATTGTTTTTTTGCGATTCTTCTGTTTTAGGGAAAACAATTTTACGACTACAAATTAAAAAAATTTTCAACCAGCCAAACAAGATTTTTTTGTGATCAAAACAGAGCAAAATATAGAAAAACTTTGATCCTTAGATTTTGGATTTAATACAATTTTTCAGACAGAATCTGGTTGATGGTTTTGTTTGTGGCATGAGTGTAGTTCAAGATAATACCATTATAAAACGTTTTGGTGTAAAAAAGAGCAACAGTCAAACCTGTAATAAACGGGCCTCCCGCTGATAAAATGTTGTTTGTCATAATATAAGAAATAGCGATTTTCAAAATTTTTAATTCTCGAAGGAATAAACAAAAATGGTCCAATTTTCTGTAATTCGTCACAGAAAATACTAAACTACTGATAAATGTCATAATCGATGTGTTTTTGTCCAGAAATACTTTATTTCAACGCAATCATGAAAAATATGGTTTTAATTACATTATTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATACAAATTTTTGGGATTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TTAAATCCAAAATCTAAGGATCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATACAAATTTTTGGGATTGTTTTGTTGCTCCGTTGCCACATTTCTCTGATAATTCTTTGATTCTTGTGTTCAAATGCCTCGTGTTTCTACAAATCCTTTCGAATTGTTTTTTTGCGATTCTTCTGTTTTAGGGAAAACAATTTTACGACTACAAATTAAAAAAATTTTCAACCAGCCAAACAAGATTTTTTTGTGATCAAAACAGAGCAAAATATAGAAAAACTTTGATCCTTAGATTTTGGATTTAA</canonical_amplicon>
		<polymorphic_amplicon>TATACAAATTTTTGGGATTGTTTTGTTGCTCCGTTGCCACATTTCTCTGATAATTCTTTGATTCTTGTGTTCAAATGCCTCGTGTTTRTACAAATCCTTTCGAATTGTTTTTTTGCGATTCTTCTGTTTTAGGGAAAACAATTTTACGACTACAAATTAAAAAAATTTTCAACCAGCCAAACAAGATTTTTTTGTGATCAAAACAGAGCAAAATATAGAAAAACTTTGATCCTTAGATTTTGGATTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31498</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>106249</contig_pos>
        <strand></strand>
        <context>AATTCTTAGA[T/A]TTTCAGAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATCTCAGAATTCTTAGA</left_flank>
        <right_flank>TTTCAGAACTTTGTAATTCCAGTATTTCGGAATCTGAAAATTTCGGAACT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATGTATGGCACATTTTATTAGAATTCGGCCTTTCTAAACTCGTATACCTCTTCTAGATTTTCAAGATTATGTTTTTCCATTTCAGCTTGTCAAATCATCGTCTCCTGGATAATTTGTGTGAATCGGAAACCAGGTACGTCGTTTATGTAATCTAAAGTACTGCGGTTCGCACTTATTCTAAATTCGTTCCTTAATCTAGTTTATCTGAGATTCCAAGCATCTCATTTTAGCGGCAAAAAATTCGGGGGGTACAATGATTCGGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAATTGGTGATTCGGGGGTACAAAATTCGTGGGTACAAAAATTCGGGGGTACAACGATTCGGGGGTACAATCTACCAATGATTCTGGTGTACAACTTATTTCATTTAGGGGTACAACGTTTGTGATTCGGGGGTACAATTTTTTTTGACGAAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATCTCAGAATTCTTAGATTTTCAGAACTTTGTAATTCCAGTATTTCGGAATCTGAAAATTTCGGAACTTCAAAGTCTGAGAATCTGAAAATTTGGGAAATTCAGAATCTCAGAATTTCAGAACTTCGAAATCTCAGAATTTCAGAAATTCAGAATTCTTAGAATTTCAGAACTTTGGAATTGTAGAATTCGCAACCTGAGAATTCGGTAACTTCAGAATCTGAGAATCAGAGAATTTCGGATCTTCAGAATCTGAGAATGCTAAAACTTCAAAATCTCAGAACTTCGGAACTTCAAAACTTCAGGACTTCAGAATCTCAATATTTCAAGAAAGACAATGGAGAACTGTGAAATGATTTTAACAAATTTTACAAACGGATTTTAATGCCAGTCGATACTTTCCTCACTTCCAATTTTTCTCAATTTTATTTCTCAATTCTTTTTCATTTCCTTTTGTTTCTCAATATTCCTTCGTTTTTTCCCAATTTTCCGTTTTTCCCAATTTTTCTTAATTTTCCT</canonical>
            <polymorphic>ATATGTATGGCACATTTTATTAGAATTCGGCCTTTCTAAACTCGTATACCTCTTCTAGATTTTCAAGATTATGTTTTTCCATTTCAGCTTGTCAAATCATCGTCTCCTGGATAATTTGTGTGAATCGGAAACCAGGTACGTCGTTTATGTAATCTAAAGTACTGCGGTTCGCACTTATTCTAAATTCGTTCCTTAATCTAGTTTATCTGAGATTCCAAGCATCTCATTTTAGCGGCAAAAAATTCGGGGGGTACAATGATTCGGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAATTGGTGATTCGGGGGTACAAAATTCGTGGGTACAAAAATTCGGGGGTACAACGATTCGGGGGTACAATCTACCAATGATTCTGGTGTACAACTTATTTCATTTAGGGGTACAACGTTTGTGATTCGGGGGTACAATTTTTTTTGACGAAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATCTCAGAATTCTTAGAWTTTCAGAACTTTGTAATTCCAGTATTTCGGAATCTGAAAATTTCGGAACTTCAAAGTCTGAGAATCTGAAAATTTGGGAAATTCAGAATCTCAGAATTTCAGAACTTCGAAATCTCAGAATTTCAGAAATTCAGAATTCTTAGAATTTCAGAACTTTGGAATTGTAGAATTCGCAACCTGAGAATTCGGTAACTTCAGAATCTGAGAATCAGAGAATTTCGGATCTTCAGAATCTGAGAATGCTAAAACTTCAAAATCTCAGAACTTCGGAACTTCAAAACTTCAGGACTTCAGAATCTCAATATTTCAAGAAAGACAATGGAGAACTGTGAAATGATTTTAACAAATTTTACAAACGGATTTTAATGCCAGTCGATACTTTCCTCACTTCCAATTTTTCTCAATTTTATTTCTCAATTCTTTTTCATTTCCTTTTGTTTCTCAATATTCCTTCGTTTTTTCCCAATTTTCCGTTTTTCCCAATTTTTCTTAATTTTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCTACCAATGATTCTGGTGTA</pcr_primer_p1>
		<pcr_primer_p2>AAAATCCGTTTGTAAAATTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>498</pcr_amplicon_size>
		<canonical_amplicon>AATCTACCAATGATTCTGGTGTACAACTTATTTCATTTAGGGGTACAACGTTTGTGATTCGGGGGTACAATTTTTTTTGACGAAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATCTCAGAATTCTTAGATTTTCAGAACTTTGTAATTCCAGTATTTCGGAATCTGAAAATTTCGGAACTTCAAAGTCTGAGAATCTGAAAATTTGGGAAATTCAGAATCTCAGAATTTCAGAACTTCGAAATCTCAGAATTTCAGAAATTCAGAATTCTTAGAATTTCAGAACTTTGGAATTGTAGAATTCGCAACCTGAGAATTCGGTAACTTCAGAATCTGAGAATCAGAGAATTTCGGATCTTCAGAATCTGAGAATGCTAAAACTTCAAAATCTCAGAACTTCGGAACTTCAAAACTTCAGGACTTCAGAATCTCAATATTTCAAGAAAGACAATGGAGAACTGTGAAATGATTTTAACAAATTTTACAAACGGATTTT</canonical_amplicon>
		<polymorphic_amplicon>AATCTACCAATGATTCTGGTGTACAACTTATTTCATTTAGGGGTACAACGTTTGTGATTCGGGGGTACAATTTTTTTTGACGAAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATCTCAGAATTCTTAGAWTTTCAGAACTTTGTAATTCCAGTATTTCGGAATCTGAAAATTTCGGAACTTCAAAGTCTGAGAATCTGAAAATTTGGGAAATTCAGAATCTCAGAATTTCAGAACTTCGAAATCTCAGAATTTCAGAAATTCAGAATTCTTAGAATTTCAGAACTTTGGAATTGTAGAATTCGCAACCTGAGAATTCGGTAACTTCAGAATCTGAGAATCAGAGAATTTCGGATCTTCAGAATCTGAGAATGCTAAAACTTCAAAATCTCAGAACTTCGGAACTTCAAAACTTCAGGACTTCAGAATCTCAATATTTCAAGAAAGACAATGGAGAACTGTGAAATGATTTTAACAAATTTTACAAACGGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31499</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>106470</contig_pos>
        <strand></strand>
        <context>agagaatttc[G/A]gatcttcaga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCGCAACCTGAGAATTCGGTAACTTCAGAATCTGAGAATCAGAGAATTTC</left_flank>
        <right_flank>GATCTTCAGAATCTGAGAATGCTAAAACTTCAAAATCTCAGAACTTCGGA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCATTTTAGCGGCAAAAAATTCGGGGGGTACAATGATTCGGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAATTGGTGATTCGGGGGTACAAAATTCGTGGGTACAAAAATTCGGGGGTACAACGATTCGGGGGTACAATCTACCAATGATTCTGGTGTACAACTTATTTCATTTAGGGGTACAACGTTTGTGATTCGGGGGTACAATTTTTTTTGACGAAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATCTCAGAATTCTTAGATTTTCAGAACTTTGTAATTCCAGTATTTCGGAATCTGAAAATTTCGGAACTTCAAAGTCTGAGAATCTGAAAATTTGGGAAATTCAGAATCTCAGAATTTCAGAACTTCGAAATCTCAGAATTTCAGAAATTCAGAATTCTTAGAATTTCAGAACTTTGGAATTGTAGAATTCGCAACCTGAGAATTCGGTAACTTCAGAATCTGAGAATCAGAGAATTTCGGATCTTCAGAATCTGAGAATGCTAAAACTTCAAAATCTCAGAACTTCGGAACTTCAAAACTTCAGGACTTCAGAATCTCAATATTTCAAGAAAGACAATGGAGAACTGTGAAATGATTTTAACAAATTTTACAAACGGATTTTAATGCCAGTCGATACTTTCCTCACTTCCAATTTTTCTCAATTTTATTTCTCAATTCTTTTTCATTTCCTTTTGTTTCTCAATATTCCTTCGTTTTTTCCCAATTTTCCGTTTTTCCCAATTTTTCTTAATTTTCCTCAATTTTCGCGATAATTCAAATTTTTCTCATTTTTAAATGATTTTCTAGATCCTTGATTGAAGGAAACAATCACAATTCAGTGATTTTCCCACAAAATTTCAAAAATCCCAAAAATTGGCCCAAAATGAGCTATTTTTTTCGAAAATCGTTCGAACTGGCAATAAAACCTTACAAAAACTTTAAAATTTATTTGTTTTCAATAAATTGCCGCAAAATGTGA</canonical>
            <polymorphic>TCTCATTTTAGCGGCAAAAAATTCGGGGGGTACAATGATTCGGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAATTGGTGATTCGGGGGTACAAAATTCGTGGGTACAAAAATTCGGGGGTACAACGATTCGGGGGTACAATCTACCAATGATTCTGGTGTACAACTTATTTCATTTAGGGGTACAACGTTTGTGATTCGGGGGTACAATTTTTTTTGACGAAGTTTCTGAATTCCTGAATTTCAGAGCTTGAAAATCTCAGAATTCTTAGATTTTCAGAACTTTGTAATTCCAGTATTTCGGAATCTGAAAATTTCGGAACTTCAAAGTCTGAGAATCTGAAAATTTGGGAAATTCAGAATCTCAGAATTTCAGAACTTCGAAATCTCAGAATTTCAGAAATTCAGAATTCTTAGAATTTCAGAACTTTGGAATTGTAGAATTCGCAACCTGAGAATTCGGTAACTTCAGAATCTGAGAATCAGAGAATTTCRGATCTTCAGAATCTGAGAATGCTAAAACTTCAAAATCTCAGAACTTCGGAACTTCAAAACTTCAGGACTTCAGAATCTCAATATTTCAAGAAAGACAATGGAGAACTGTGAAATGATTTTAACAAATTTTACAAACGGATTTTAATGCCAGTCGATACTTTCCTCACTTCCAATTTTTCTCAATTTTATTTCTCAATTCTTTTTCATTTCCTTTTGTTTCTCAATATTCCTTCGTTTTTTCCCAATTTTCCGTTTTTCCCAATTTTTCTTAATTTTCCTCAATTTTCGCGATAATTCAAATTTTTCTCATTTTTAAATGATTTTCTAGATCCTTGATTGAAGGAAACAATCACAATTCAGTGATTTTCCCACAAAATTTCAAAAATCCCAAAAATTGGCCCAAAATGAGCTATTTTTTTCGAAAATCGTTCGAACTGGCAATAAAACCTTACAAAAACTTTAAAATTTATTTGTTTTCAATAAATTGCCGCAAAATGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>500 327 173</canonical_bands>
                <polymorphic_bands>827 173</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAGCTTGAAAATCTCAGAA</pcr_primer_p1>
		<pcr_primer_p2>AAAATCCGTTTGTAAAATTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>394</pcr_amplicon_size>
		<canonical_amplicon>CAGAGCTTGAAAATCTCAGAATTCTTAGATTTTCAGAACTTTGTAATTCCAGTATTTCGGAATCTGAAAATTTCGGAACTTCAAAGTCTGAGAATCTGAAAATTTGGGAAATTCAGAATCTCAGAATTTCAGAACTTCGAAATCTCAGAATTTCAGAAATTCAGAATTCTTAGAATTTCAGAACTTTGGAATTGTAGAATTCGCAACCTGAGAATTCGGTAACTTCAGAATCTGAGAATCAGAGAATTTCGGATCTTCAGAATCTGAGAATGCTAAAACTTCAAAATCTCAGAACTTCGGAACTTCAAAACTTCAGGACTTCAGAATCTCAATATTTCAAGAAAGACAATGGAGAACTGTGAAATGATTTTAACAAATTTTACAAACGGATTTT</canonical_amplicon>
		<polymorphic_amplicon>CAGAGCTTGAAAATCTCAGAATTCTTAGATTTTCAGAACTTTGTAATTCCAGTATTTCGGAATCTGAAAATTTCGGAACTTCAAAGTCTGAGAATCTGAAAATTTGGGAAATTCAGAATCTCAGAATTTCAGAACTTCGAAATCTCAGAATTTCAGAAATTCAGAATTCTTAGAATTTCAGAACTTTGGAATTGTAGAATTCGCAACCTGAGAATTCGGTAACTTCAGAATCTGAGAATCAGAGAATTTCRGATCTTCAGAATCTGAGAATGCTAAAACTTCAAAATCTCAGAACTTCGGAACTTCAAAACTTCAGGACTTCAGAATCTCAATATTTCAAGAAAGACAATGGAGAACTGTGAAATGATTTTAACAAATTTTACAAACGGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31500</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>106729</contig_pos>
        <strand></strand>
        <context>TCCGTTTTTC[C/T]CAATTTTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCTTTTGTTTCTCAATATTCCTTCGTTTTTTCCCAATTTTCCGTTTTTC</left_flank>
        <right_flank>CAATTTTTCTTAATTTTCCTCAATTTTCGCGATAATTCAAATTTTTCTCA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCTCAGAATTCTTAGATTTTCAGAACTTTGTAATTCCAGTATTTCGGAATCTGAAAATTTCGGAACTTCAAAGTCTGAGAATCTGAAAATTTGGGAAATTCAGAATCTCAGAATTTCAGAACTTCGAAATCTCAGAATTTCAGAAATTCAGAATTCTTAGAATTTCAGAACTTTGGAATTGTAGAATTCGCAACCTGAGAATTCGGTAACTTCAGAATCTGAGAATCAGAGAATTTCGGATCTTCAGAATCTGAGAATGCTAAAACTTCAAAATCTCAGAACTTCGGAACTTCAAAACTTCAGGACTTCAGAATCTCAATATTTCAAGAAAGACAATGGAGAACTGTGAAATGATTTTAACAAATTTTACAAACGGATTTTAATGCCAGTCGATACTTTCCTCACTTCCAATTTTTCTCAATTTTATTTCTCAATTCTTTTTCATTTCCTTTTGTTTCTCAATATTCCTTCGTTTTTTCCCAATTTTCCGTTTTTCCCAATTTTTCTTAATTTTCCTCAATTTTCGCGATAATTCAAATTTTTCTCATTTTTAAATGATTTTCTAGATCCTTGATTGAAGGAAACAATCACAATTCAGTGATTTTCCCACAAAATTTCAAAAATCCCAAAAATTGGCCCAAAATGAGCTATTTTTTTCGAAAATCGTTCGAACTGGCAATAAAACCTTACAAAAACTTTAAAATTTATTTGTTTTCAATAAATTGCCGCAAAATGTGAGCAAAAATAATGAAAAACGAAGGAAAACGGAGAAAAATGGGAATTGCGAAAAGATCTCAATTTCGCGAAATTTTTCCATGGAAGAGAAAACCCCGCAGCTCGGCCACGGCCATGGCTGATGACGTCATCGCTCGCAAATTTTATTTTTGGGATTTTCTCCGTTTTCCTTCGTTTTTCATCATTTTTGCTCAAATTTTCGTGGTAATTTATCGAAAAAAATTAATTCCCAATTTTTGAAATGTTTTATGGCCTGTTCGAA</canonical>
            <polymorphic>AAATCTCAGAATTCTTAGATTTTCAGAACTTTGTAATTCCAGTATTTCGGAATCTGAAAATTTCGGAACTTCAAAGTCTGAGAATCTGAAAATTTGGGAAATTCAGAATCTCAGAATTTCAGAACTTCGAAATCTCAGAATTTCAGAAATTCAGAATTCTTAGAATTTCAGAACTTTGGAATTGTAGAATTCGCAACCTGAGAATTCGGTAACTTCAGAATCTGAGAATCAGAGAATTTCGGATCTTCAGAATCTGAGAATGCTAAAACTTCAAAATCTCAGAACTTCGGAACTTCAAAACTTCAGGACTTCAGAATCTCAATATTTCAAGAAAGACAATGGAGAACTGTGAAATGATTTTAACAAATTTTACAAACGGATTTTAATGCCAGTCGATACTTTCCTCACTTCCAATTTTTCTCAATTTTATTTCTCAATTCTTTTTCATTTCCTTTTGTTTCTCAATATTCCTTCGTTTTTTCCCAATTTTCCGTTTTTCYCAATTTTTCTTAATTTTCCTCAATTTTCGCGATAATTCAAATTTTTCTCATTTTTAAATGATTTTCTAGATCCTTGATTGAAGGAAACAATCACAATTCAGTGATTTTCCCACAAAATTTCAAAAATCCCAAAAATTGGCCCAAAATGAGCTATTTTTTTCGAAAATCGTTCGAACTGGCAATAAAACCTTACAAAAACTTTAAAATTTATTTGTTTTCAATAAATTGCCGCAAAATGTGAGCAAAAATAATGAAAAACGAAGGAAAACGGAGAAAAATGGGAATTGCGAAAAGATCTCAATTTCGCGAAATTTTTCCATGGAAGAGAAAACCCCGCAGCTCGGCCACGGCCATGGCTGATGACGTCATCGCTCGCAAATTTTATTTTTGGGATTTTCTCCGTTTTCCTTCGTTTTTCATCATTTTTGCTCAAATTTTCGTGGTAATTTATCGAAAAAAATTAATTCCCAATTTTTGAAATGTTTTATGGCCTGTTCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACAAATTTTACAAACGGATTT</pcr_primer_p1>
		<pcr_primer_p2>AAATCACTGAATTGTGATTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TAACAAATTTTACAAACGGATTTTAATGCCAGTCGATACTTTCCTCACTTCCAATTTTTCTCAATTTTATTTCTCAATTCTTTTTCATTTCCTTTTGTTTCTCAATATTCCTTCGTTTTTTCCCAATTTTCCGTTTTTCCCAATTTTTCTTAATTTTCCTCAATTTTCGCGATAATTCAAATTTTTCTCATTTTTAAATGATTTTCTAGATCCTTGATTGAAGGAAACAATCACAATTCAGTGATTT</canonical_amplicon>
		<polymorphic_amplicon>TAACAAATTTTACAAACGGATTTTAATGCCAGTCGATACTTTCCTCACTTCCAATTTTTCTCAATTTTATTTCTCAATTCTTTTTCATTTCCTTTTGTTTCTCAATATTCCTTCGTTTTTTCCCAATTTTCCGTTTTTCYCAATTTTTCTTAATTTTCCTCAATTTTCGCGATAATTCAAATTTTTCTCATTTTTAAATGATTTTCTAGATCCTTGATTGAAGGAAACAATCACAATTCAGTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31501</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>151267</contig_pos>
        <strand>+</strand>
        <context>GCGAAGCTGW[A/T]CTCCAAAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATGAAATTTTAAATTGAAGTTTACTAACACTAAAACAATGCGAAGCTGA</left_flank>
        <right_flank>CTCCAAAAACATTTCGTTTTAGATGCTAACAATGAAAAATGGATTTTGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTAGTGAGATTTATTTTTTGAGAGAAAAAAAATGTTCTGAAATATTGAGTGGGTTTTGTCTAAGCATTCGTAAATCAAATTATCGGTGGGATAACACAGCCTGTGATTTAGATTTGATCATACTCAGAATTTTCTGATTTCTGCTAGTCTTCGTAACCTAACGAATCAAAAATCAACAAGATGTGTCTGTCGTTGGACACCAAAGGAGTAGTCTGTGTGACTAATTTCCGGTTAACAAAAAAATTTGATTAGCTGCTGTCCAGTCATTTTGAGTTCGCAGGGTAAAGAACAAGAAACATATGGGCGGTCCTAAAACGCTCAATGATGTTCGTGTTTGATCAGCCAGGGTGCCCTCTGTAAAGGTAATCCGATGGTCTGGCAGAGATAGGGACGATTAGGAGAGACAGAAAGAATGGAAGGGCAAAACTAAGACTGTTGGTTTTTGAAAAATGAAATTTTAAATTGAAGTTTACTAACACTAAAACAATGCGAAGCTGATCTCCAAAAACATTTCGTTTTAGATGCTAACAATGAAAAATGGATTTTGATGGCCACCAGCGGAGCATGCCATCCAGCTCTAAATATTGCCAAGCAGCACAAAGAGAAGGTTTCGGGACTATTCCTGATGTGTCCTGGTACAGGTTTGGATATGAGTTTTGTGGATACGATTCAACCAGGAGCATTGAAGTATCTTATGAAGACCGGATCCATCAAGTATCCTCCATCAAAACACGGACATCCGGCTCTTTTGAACATTGAGTGTCTTCAGGATTTCTTGAAAGTAAGCCAGCCTTATTACCATATCGCCCACCTAAACGGTCAACTTTGAACTTGATTATCTCGATTCCTGTGAAAGGTATGAAAAAGTGGTAAACTGTAATATTTTTGAAATTACGATTTATATTTTGTTAATGGACCGCCTAATGATATCTCTTACTGTAAATGAAATATATGAGCTCAAAGTTGTTCGGTTTGATGGGCTTCTATTAGAGGGTATAC</canonical>
            <polymorphic>ATTAGTGAGATTTATTTTTTGAGAGAAAAAAAATGTTCTGAAATATTGAGTGGGTTTTGTCTAAGCATTCGTAAATCAAATTATCGGTGGGATAACACAGCCTGTGATTTAGATTTGATCATACTCAGAATTTTCTGATTTCTGCTAGTCTTCGTAACCTAACGAATCAAAAATCAACAAGATGTGTCTGTCGTTGGACACCAAAGGAGTAGTCTGTGTGACTAATTTCCGGTTAACAAAAAAATTTGATTAGCTGCTGTCCAGTCATTTTGAGTTCGCAGGGTAAAGAACAAGAAACATATGGGCGGTCCTAAAACGCTCAATGATGTTCGTGTTTGATCAGCCAGGGTGCCCTCTGTAAAGGTAATCCGATGGTCTGGCAGAGATAGGGACGATTAGGAGAGACAGAAAGAATGGAAGGGCAAAACTAAGACTGTTGGTTTTTGAAAAATGAAATTTTAAATTGAAGTTTACTAACACTAAAACAATGCGAAGCTGAWCTCCAAAAACATTTCGTTTTAGATGCTAACAATGAAAAATGGATTTTGATGGCCACCAGCGGAGCATGCCATCCAGCTCTAAATATTGCCAAGCAGCACAAAGAGAAGGTTTCGGGACTATTCCTGATGTGTCCTGGTACAGGTTTGGATATGAGTTTTGTGGATACGATTCAACCAGGAGCATTGAAGTATCTTATGAAGACCGGATCCATCAAGTATCCTCCATCAAAACACGGACATCCGGCTCTTTTGAACATTGAGTGTCTTCAGGATTTCTTGAAAGTAAGCCAGCCTTATTACCATATCGCCCACCTAAACGGTCAACTTTGAACTTGATTATCTCGATTCCTGTGAAAGGTATGAAAAAGTGGTAAACTGTAATATTTTTGAAATTACGATTTATATTTTGTTAATGGACCGCCTAATGATATCTCTTACTGTAAATGAAATATATGAGCTCAAAGTTGTTCGGTTTGATGGGCTTCTATTAGAGGGTATAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>295 221 208 160 116</canonical_bands>
                <polymorphic_bands>368 295 221 116</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATTAGGAGAGACAGAAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TACCAGGACACATCAGGAATA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CGATTAGGAGAGACAGAAAGAATGGAAGGGCAAAACTAAGACTGTTGGTTTTTGAAAAATGAAATTTTAAATTGAAGTTTACTAACACTAAAACAATGCGAAGCTGATCTCCAAAAACATTTCGTTTTAGATGCTAACAATGAAAAATGGATTTTGATGGCCACCAGCGGAGCATGCCATCCAGCTCTAAATATTGCCAAGCAGCACAAAGAGAAGGTTTCGGGACTATTCCTGATGTGTCCTGGTA</canonical_amplicon>
		<polymorphic_amplicon>CGATTAGGAGAGACAGAAAGAATGGAAGGGCAAAACTAAGACTGTTGGTTTTTGAAAAATGAAATTTTAAATTGAAGTTTACTAACACTAAAACAATGCGAAGCTGAWCTCCAAAAACATTTCGTTTTAGATGCTAACAATGAAAAATGGATTTTGATGGCCACCAGCGGAGCATGCCATCCAGCTCTAAATATTGCCAAGCAGCACAAAGAGAAGGTTTCGGGACTATTCCTGATGTGTCCTGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31502</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>153664</contig_pos>
        <strand>+</strand>
        <context>AAATTTTTGG[G/T]GTCAATTAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACTTTTTTCCTGAACTTTTTTTCAGAATTTTTTTCCGAAAAATTTTTGG</left_flank>
        <right_flank>GTCAATTAAAAAAAACAAGTGTTTCTGTAAAGTCATTCTTGCCAAGAACA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATAGACGAATTGCACGGCTAATAGGGATATGGTAGCTGCATAAGTGCTAGAGTAGGCAGCTGAAATTGAGATCTATTAGATTTGCAATTAGCCTTTTTACGTGTTAAATAAAACTTTTTTATCCAAATATCAGATTCTCGGTCAAAGTCTATGAAAACATTGCAGGTGGTATCTGGGGAAAAGTAGCCAGAAAAGTCTGGGTGCATAGGGACTCAAAAATTGGAAAAACTACAGTAACCCTTCAAAATATATTTTCAATCTTACCTAATAATATCATGGCAACTTCCTTTGAACATCCAAAGGGTCTTTCCAATGTGAAAAACGTAAAGCTCGCTTTGTAATTGTGGGTCATCTGAAAATTAACCAGTTTACAAAAAGTCATACTTGCAACGGTTTTTTTTAATTCAGGGCTCGGCCTGGCTGGCTTGTCTCGTGCCCGATTTTCAGAACTTTTTTCCTGAACTTTTTTTCAGAATTTTTTTCCGAAAAATTTTTGGTGTCAATTAAAAAAAACAAGTGTTTCTGTAAAGTCATTCTTGCCAAGAACAGGGTGTCGCTAAAAAGATTTTTTCACAGAAAATGAAAATTACGAAATTGCTTCAAATGTGGAAAACTCGGCCCGGTCCGGCCTGGCCAGACCAGGCCCAACCAGGCCTGTGGATCGGGCCCTGATTTTTCGAGTATACAAAAAATCTTAATTTTCACTTACCGGTTTTATAATAAACTCTGCTGTTGCAAACAGTATTCCCATTATGGAAAATGATAAAATTAGATATTTATATGCACCGAATACTTGTTTTGTATGGAACACGATGAGATATACCAGAAAAGAATTGACGACAAGAGTGGAGAAAAACCCGATTTCAGAAGCCAAAAACGACTTTTCAACCCATCGGATAGACGACATTTCTGAAAATGGGATGTTAGAAATCAGAGAGAACAATCTCAAAAAGTGACAAGAATGAAACTGCGAGACACTTGTAATTGAACCTAACAAG</canonical>
            <polymorphic>CGATAGACGAATTGCACGGCTAATAGGGATATGGTAGCTGCATAAGTGCTAGAGTAGGCAGCTGAAATTGAGATCTATTAGATTTGCAATTAGCCTTTTTACGTGTTAAATAAAACTTTTTTATCCAAATATCAGATTCTCGGTCAAAGTCTATGAAAACATTGCAGGTGGTATCTGGGGAAAAGTAGCCAGAAAAGTCTGGGTGCATAGGGACTCAAAAATTGGAAAAACTACAGTAACCCTTCAAAATATATTTTCAATCTTACCTAATAATATCATGGCAACTTCCTTTGAACATCCAAAGGGTCTTTCCAATGTGAAAAACGTAAAGCTCGCTTTGTAATTGTGGGTCATCTGAAAATTAACCAGTTTACAAAAAGTCATACTTGCAACGGTTTTTTTTAATTCAGGGCTCGGCCTGGCTGGCTTGTCTCGTGCCCGATTTTCAGAACTTTTTTCCTGAACTTTTTTTCAGAATTTTTTTCCGAAAAATTTTTGGKGTCAATTAAAAAAAACAAGTGTTTCTGTAAAGTCATTCTTGCCAAGAACAGGGTGTCGCTAAAAAGATTTTTTCACAGAAAATGAAAATTACGAAATTGCTTCAAATGTGGAAAACTCGGCCCGGTCCGGCCTGGCCAGACCAGGCCCAACCAGGCCTGTGGATCGGGCCCTGATTTTTCGAGTATACAAAAAATCTTAATTTTCACTTACCGGTTTTATAATAAACTCTGCTGTTGCAAACAGTATTCCCATTATGGAAAATGATAAAATTAGATATTTATATGCACCGAATACTTGTTTTGTATGGAACACGATGAGATATACCAGAAAAGAATTGACGACAAGAGTGGAGAAAAACCCGATTTCAGAAGCCAAAAACGACTTTTCAACCCATCGGATAGACGACATTTCTGAAAATGGGATGTTAGAAATCAGAGAGAACAATCTCAAAAAGTGACAAGAATGAAACTGCGAGACACTTGTAATTGAACCTAACAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>114 107 89 81 65 64 57 51 45 38 35 35 34 32 29 25 22 21 20 20 16</canonical_bands>
                <polymorphic_bands>114 107 89 84 81 65 57 51 45 38 35 35 34 32 29 25 22 21 20 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAAAGCTCGCTTTGTAATTGT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATCTTTTTAGCGACACC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTAAAGCTCGCTTTGTAATTGTGGGTCATCTGAAAATTAACCAGTTTACAAAAAGTCATACTTGCAACGGTTTTTTTTAATTCAGGGCTCGGCCTGGCTGGCTTGTCTCGTGCCCGATTTTCAGAACTTTTTTCCTGAACTTTTTTTCAGAATTTTTTTCCGAAAAATTTTTGGTGTCAATTAAAAAAAACAAGTGTTTCTGTAAAGTCATTCTTGCCAAGAACAGGGTGTCGCTAAAAAGATTTTT</canonical_amplicon>
		<polymorphic_amplicon>GTAAAGCTCGCTTTGTAATTGTGGGTCATCTGAAAATTAACCAGTTTACAAAAAGTCATACTTGCAACGGTTTTTTTTAATTCAGGGCTCGGCCTGGCTGGCTTGTCTCGTGCCCGATTTTCAGAACTTTTTTCCTGAACTTTTTTTCAGAATTTTTTTCCGAAAAATTTTTGGKGTCAATTAAAAAAAACAAGTGTTTCTGTAAAGTCATTCTTGCCAAGAACAGGGTGTCGCTAAAAAGATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31503</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>196049</contig_pos>
        <strand></strand>
        <context>GTGGTGTTTG[G/A]TTTTAGCTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGGTGGGACCAAAACTTCCAATGCATCTAGAGTGATAGTCGTGGTGTTTG</left_flank>
        <right_flank>TTTTAGCTCATTGAGAGTTGGAGGTTTTGGAGCTCTAAAATTTCAAAATA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGAGTTGTTGAATGCAGAGGAGAAGGTTGCTGGTGACTTGCTGTCCGAAGATGTTGAAGCCAGGCAGCTCGCTGACAGCGTCTTGCAAGCGAATGATGACGTTCTGAGAAAAATAGGTTAAAATGAACTTTTCTAAAAATTTACCTTGTCATTAGTAGTCATGCTCAATTGCACATTCTTCATGACAAAGTTATTATGGTTTTGGATCACTATCACATAGGAGTGGATGTTGCTAACAGTCATGTCGGATTGGCAGTAGTAGAGAAGGATTCGGACACCTTTGCTATCCAAGATCTGGACTGGGAGACGGTTTCCTGGAACAAATCGTTAAAATTTTTCCGATTCTCATTCATAATAAAAAGTATTACTCATGATAATGGAACTGGGATTCATGAACACCTTCTCCGGAATTACTTTTGGCGACAAACTAGTTGGCTCCGGTGACAATGGTGGGACCAAAACTTCCAATGCATCTAGAGTGATAGTCGTGGTGTTTGGTTTTAGCTCATTGAGAGTTGGAGGTTTTGGAGCTCTAAAATTTCAAAATATGATTTTTTTTGCACCTGCGTCCCTCACTCTGGCAATCGTTTCCCAGCCAGAAAATCAGTCTCGAAAATCGAGTCCCCACTAGCACGGGGGCTCGACGAGCTATTGCGATTTGAGACTGGAGTCATTTGTTGAACGGGAATGATCTGAAATGTTGTTTTGCTCTCTTTTGCTCCTTTGGGAAAAGTTTCCAGAAAACAAACCTTTGGCTCCTCCACAAACTCTGACTCAATCATGTTGTTGAGAAGACTCCCTTCCTGAAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAACATATTCATCAGTTCATTCAGCCATTTTTATCATTTTTGAAAGTCTGAAACTCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAACGGATCTAGATTGGAAACTATGCATTCATATACTTTTTTAAAG</canonical>
            <polymorphic>GTTGAGTTGTTGAATGCAGAGGAGAAGGTTGCTGGTGACTTGCTGTCCGAAGATGTTGAAGCCAGGCAGCTCGCTGACAGCGTCTTGCAAGCGAATGATGACGTTCTGAGAAAAATAGGTTAAAATGAACTTTTCTAAAAATTTACCTTGTCATTAGTAGTCATGCTCAATTGCACATTCTTCATGACAAAGTTATTATGGTTTTGGATCACTATCACATAGGAGTGGATGTTGCTAACAGTCATGTCGGATTGGCAGTAGTAGAGAAGGATTCGGACACCTTTGCTATCCAAGATCTGGACTGGGAGACGGTTTCCTGGAACAAATCGTTAAAATTTTTCCGATTCTCATTCATAATAAAAAGTATTACTCATGATAATGGAACTGGGATTCATGAACACCTTCTCCGGAATTACTTTTGGCGACAAACTAGTTGGCTCCGGTGACAATGGTGGGACCAAAACTTCCAATGCATCTAGAGTGATAGTCGTGGTGTTTGRTTTTAGCTCATTGAGAGTTGGAGGTTTTGGAGCTCTAAAATTTCAAAATATGATTTTTTTTGCACCTGCGTCCCTCACTCTGGCAATCGTTTCCCAGCCAGAAAATCAGTCTCGAAAATCGAGTCCCCACTAGCACGGGGGCTCGACGAGCTATTGCGATTTGAGACTGGAGTCATTTGTTGAACGGGAATGATCTGAAATGTTGTTTTGCTCTCTTTTGCTCCTTTGGGAAAAGTTTCCAGAAAACAAACCTTTGGCTCCTCCACAAACTCTGACTCAATCATGTTGTTGAGAAGACTCCCTTCCTGAAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAACATATTCATCAGTTCATTCAGCCATTTTTATCATTTTTGAAAGTCTGAAACTCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAACGGATCTAGATTGGAAACTATGCATTCATATACTTTTTTAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATAATGGAACTGGGATTC</pcr_primer_p1>
		<pcr_primer_p2>GATTTTCGAGACTGATTTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATGATAATGGAACTGGGATTCATGAACACCTTCTCCGGAATTACTTTTGGCGACAAACTAGTTGGCTCCGGTGACAATGGTGGGACCAAAACTTCCAATGCATCTAGAGTGATAGTCGTGGTGTTTGGTTTTAGCTCATTGAGAGTTGGAGGTTTTGGAGCTCTAAAATTTCAAAATATGATTTTTTTTGCACCTGCGTCCCTCACTCTGGCAATCGTTTCCCAGCCAGAAAATCAGTCTCGAAAATC</canonical_amplicon>
		<polymorphic_amplicon>ATGATAATGGAACTGGGATTCATGAACACCTTCTCCGGAATTACTTTTGGCGACAAACTAGTTGGCTCCGGTGACAATGGTGGGACCAAAACTTCCAATGCATCTAGAGTGATAGTCGTGGTGTTTGRTTTTAGCTCATTGAGAGTTGGAGGTTTTGGAGCTCTAAAATTTCAAAATATGATTTTTTTTGCACCTGCGTCCCTCACTCTGGCAATCGTTTCCCAGCCAGAAAATCAGTCTCGAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31504</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>196103</contig_pos>
        <strand>+</strand>
        <context>CAAAATATGA[A/G]TTTTTTTGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGCTCATTGAGAGTTGGAGGTTTTGGAGCTCTAAAATTTCAAAATATGA</left_flank>
        <right_flank>TTTTTTTGCACCTGCGTCCCTCACTCTGGCAATCGTTTCCCAGCCAGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGAAGCCAGGCAGCTCGCTGACAGCGTCTTGCAAGCGAATGATGACGTTCTGAGAAAAATAGGTTAAAATGAACTTTTCTAAAAATTTACCTTGTCATTAGTAGTCATGCTCAATTGCACATTCTTCATGACAAAGTTATTATGGTTTTGGATCACTATCACATAGGAGTGGATGTTGCTAACAGTCATGTCGGATTGGCAGTAGTAGAGAAGGATTCGGACACCTTTGCTATCCAAGATCTGGACTGGGAGACGGTTTCCTGGAACAAATCGTTAAAATTTTTCCGATTCTCATTCATAATAAAAAGTATTACTCATGATAATGGAACTGGGATTCATGAACACCTTCTCCGGAATTACTTTTGGCGACAAACTAGTTGGCTCCGGTGACAATGGTGGGACCAAAACTTCCAATGCATCTAGAGTGATAGTCGTGGTGTTTGGTTTTAGCTCATTGAGAGTTGGAGGTTTTGGAGCTCTAAAATTTCAAAATATGATTTTTTTTGCACCTGCGTCCCTCACTCTGGCAATCGTTTCCCAGCCAGAAAATCAGTCTCGAAAATCGAGTCCCCACTAGCACGGGGGCTCGACGAGCTATTGCGATTTGAGACTGGAGTCATTTGTTGAACGGGAATGATCTGAAATGTTGTTTTGCTCTCTTTTGCTCCTTTGGGAAAAGTTTCCAGAAAACAAACCTTTGGCTCCTCCACAAACTCTGACTCAATCATGTTGTTGAGAAGACTCCCTTCCTGAAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAACATATTCATCAGTTCATTCAGCCATTTTTATCATTTTTGAAAGTCTGAAACTCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAACGGATCTAGATTGGAAACTATGCATTCATATACTTTTTTAAAGAATTCCCAAACTGCAGTTATTTTCCATTTACTGAAAAACACCCCGTTTTGGTCA</canonical>
            <polymorphic>GTTGAAGCCAGGCAGCTCGCTGACAGCGTCTTGCAAGCGAATGATGACGTTCTGAGAAAAATAGGTTAAAATGAACTTTTCTAAAAATTTACCTTGTCATTAGTAGTCATGCTCAATTGCACATTCTTCATGACAAAGTTATTATGGTTTTGGATCACTATCACATAGGAGTGGATGTTGCTAACAGTCATGTCGGATTGGCAGTAGTAGAGAAGGATTCGGACACCTTTGCTATCCAAGATCTGGACTGGGAGACGGTTTCCTGGAACAAATCGTTAAAATTTTTCCGATTCTCATTCATAATAAAAAGTATTACTCATGATAATGGAACTGGGATTCATGAACACCTTCTCCGGAATTACTTTTGGCGACAAACTAGTTGGCTCCGGTGACAATGGTGGGACCAAAACTTCCAATGCATCTAGAGTGATAGTCGTGGTGTTTGGTTTTAGCTCATTGAGAGTTGGAGGTTTTGGAGCTCTAAAATTTCAAAATATGARTTTTTTTGCACCTGCGTCCCTCACTCTGGCAATCGTTTCCCAGCCAGAAAATCAGTCTCGAAAATCGAGTCCCCACTAGCACGGGGGCTCGACGAGCTATTGCGATTTGAGACTGGAGTCATTTGTTGAACGGGAATGATCTGAAATGTTGTTTTGCTCTCTTTTGCTCCTTTGGGAAAAGTTTCCAGAAAACAAACCTTTGGCTCCTCCACAAACTCTGACTCAATCATGTTGTTGAGAAGACTCCCTTCCTGAAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAACATATTCATCAGTTCATTCAGCCATTTTTATCATTTTTGAAAGTCTGAAACTCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAACGGATCTAGATTGGAAACTATGCATTCATATACTTTTTTAAAGAATTCCCAAACTGCAGTTATTTTCCATTTACTGAAAAACACCCCGTTTTGGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGCATCTAGAGTGATAGTCGT</pcr_primer_p1>
		<pcr_primer_p2>AAAGAGAGCAAAACAACATTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATGCATCTAGAGTGATAGTCGTGGTGTTTGGTTTTAGCTCATTGAGAGTTGGAGGTTTTGGAGCTCTAAAATTTCAAAATATGATTTTTTTTGCACCTGCGTCCCTCACTCTGGCAATCGTTTCCCAGCCAGAAAATCAGTCTCGAAAATCGAGTCCCCACTAGCACGGGGGCTCGACGAGCTATTGCGATTTGAGACTGGAGTCATTTGTTGAACGGGAATGATCTGAAATGTTGTTTTGCTCTCTTT</canonical_amplicon>
		<polymorphic_amplicon>AATGCATCTAGAGTGATAGTCGTGGTGTTTGGTTTTAGCTCATTGAGAGTTGGAGGTTTTGGAGCTCTAAAATTTCAAAATATGARTTTTTTTGCACCTGCGTCCCTCACTCTGGCAATCGTTTCCCAGCCAGAAAATCAGTCTCGAAAATCGAGTCCCCACTAGCACGGGGGCTCGACGAGCTATTGCGATTTGAGACTGGAGTCATTTGTTGAACGGGAATGATCTGAAATGTTGTTTTGCTCTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31505</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>196508</contig_pos>
        <strand></strand>
        <context>agtgtataac[G/A]gatctagatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAAC</left_flank>
        <right_flank>GATCTAGATTGGAAACTATGCATTCATATACTTTTTTAAAGAATTCCCAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACTTCCAATGCATCTAGAGTGATAGTCGTGGTGTTTGGTTTTAGCTCATTGAGAGTTGGAGGTTTTGGAGCTCTAAAATTTCAAAATATGATTTTTTTTGCACCTGCGTCCCTCACTCTGGCAATCGTTTCCCAGCCAGAAAATCAGTCTCGAAAATCGAGTCCCCACTAGCACGGGGGCTCGACGAGCTATTGCGATTTGAGACTGGAGTCATTTGTTGAACGGGAATGATCTGAAATGTTGTTTTGCTCTCTTTTGCTCCTTTGGGAAAAGTTTCCAGAAAACAAACCTTTGGCTCCTCCACAAACTCTGACTCAATCATGTTGTTGAGAAGACTCCCTTCCTGAAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAACATATTCATCAGTTCATTCAGCCATTTTTATCATTTTTGAAAGTCTGAAACTCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAACGGATCTAGATTGGAAACTATGCATTCATATACTTTTTTAAAGAATTCCCAAACTGCAGTTATTTTCCATTTACTGAAAAACACCCCGTTTTGGTCAGTTTTTGCACTAAAAACGTGAAAAAAGAGGTGTCTTTCAAAAATCGGTCAATAGGTGAAAAACTAGGAAATTTCAGAAAATTATGTGAATACAAAATTTTCAATCTAGGTTTGTTTCACACTTTCTCTCCTGAAAACTGTTCAAATAGCGAAAAATCAACTGAAACATATGTTTTTGTAGTTTTTATTGAACGATACTGTAGGTTTGAAAAAATATAAATTTATTACCAAATCACGTGGATCACAAAATCCGTTCCTCGGTCCCGTCTTACTGGTTGGCGAGTTGAAGACTAGCAATTCTTGGTTTTCCGGCTCCACTGTAATTAACAAAAATTTGAAGGAAAACCAGTTATTCCCCTATCTCTCCTCTTCTCTCCTCTTCTCTCAAAACTTTCTATAATAGAAT</canonical>
            <polymorphic>AAAACTTCCAATGCATCTAGAGTGATAGTCGTGGTGTTTGGTTTTAGCTCATTGAGAGTTGGAGGTTTTGGAGCTCTAAAATTTCAAAATATGATTTTTTTTGCACCTGCGTCCCTCACTCTGGCAATCGTTTCCCAGCCAGAAAATCAGTCTCGAAAATCGAGTCCCCACTAGCACGGGGGCTCGACGAGCTATTGCGATTTGAGACTGGAGTCATTTGTTGAACGGGAATGATCTGAAATGTTGTTTTGCTCTCTTTTGCTCCTTTGGGAAAAGTTTCCAGAAAACAAACCTTTGGCTCCTCCACAAACTCTGACTCAATCATGTTGTTGAGAAGACTCCCTTCCTGAAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAACATATTCATCAGTTCATTCAGCCATTTTTATCATTTTTGAAAGTCTGAAACTCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAACRGATCTAGATTGGAAACTATGCATTCATATACTTTTTTAAAGAATTCCCAAACTGCAGTTATTTTCCATTTACTGAAAAACACCCCGTTTTGGTCAGTTTTTGCACTAAAAACGTGAAAAAAGAGGTGTCTTTCAAAAATCGGTCAATAGGTGAAAAACTAGGAAATTTCAGAAAATTATGTGAATACAAAATTTTCAATCTAGGTTTGTTTCACACTTTCTCTCCTGAAAACTGTTCAAATAGCGAAAAATCAACTGAAACATATGTTTTTGTAGTTTTTATTGAACGATACTGTAGGTTTGAAAAAATATAAATTTATTACCAAATCACGTGGATCACAAAATCCGTTCCTCGGTCCCGTCTTACTGGTTGGCGAGTTGAAGACTAGCAATTCTTGGTTTTCCGGCTCCACTGTAATTAACAAAAATTTGAAGGAAAACCAGTTATTCCCCTATCTCTCCTCTTCTCTCCTCTTCTCTCAAAACTTTCTATAATAGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCATGTTGTTGAGAAGACTCC</pcr_primer_p1>
		<pcr_primer_p2>ATCCACGTGATTTGGTAATAA</pcr_primer_p2>
		<pcr_amplicon_size>516</pcr_amplicon_size>
		<canonical_amplicon>ATCATGTTGTTGAGAAGACTCCCTTCCTGAAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAACATATTCATCAGTTCATTCAGCCATTTTTATCATTTTTGAAAGTCTGAAACTCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAACGGATCTAGATTGGAAACTATGCATTCATATACTTTTTTAAAGAATTCCCAAACTGCAGTTATTTTCCATTTACTGAAAAACACCCCGTTTTGGTCAGTTTTTGCACTAAAAACGTGAAAAAAGAGGTGTCTTTCAAAAATCGGTCAATAGGTGAAAAACTAGGAAATTTCAGAAAATTATGTGAATACAAAATTTTCAATCTAGGTTTGTTTCACACTTTCTCTCCTGAAAACTGTTCAAATAGCGAAAAATCAACTGAAACATATGTTTTTGTAGTTTTTATTGAACGATACTGTAGGTTTGAAAAAATATAAATTTATTACCAAATCACGTGGAT</canonical_amplicon>
		<polymorphic_amplicon>ATCATGTTGTTGAGAAGACTCCCTTCCTGAAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAACATATTCATCAGTTCATTCAGCCATTTTTATCATTTTTGAAAGTCTGAAACTCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAACRGATCTAGATTGGAAACTATGCATTCATATACTTTTTTAAAGAATTCCCAAACTGCAGTTATTTTCCATTTACTGAAAAACACCCCGTTTTGGTCAGTTTTTGCACTAAAAACGTGAAAAAAGAGGTGTCTTTCAAAAATCGGTCAATAGGTGAAAAACTAGGAAATTTCAGAAAATTATGTGAATACAAAATTTTCAATCTAGGTTTGTTTCACACTTTCTCTCCTGAAAACTGTTCAAATAGCGAAAAATCAACTGAAACATATGTTTTTGTAGTTTTTATTGAACGATACTGTAGGTTTGAAAAAATATAAATTTATTACCAAATCACGTGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31506</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>196526</contig_pos>
        <strand></strand>
        <context>attggaaact[A/T]tgcattcata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATCACTTTGAAAATTTTGAAGAGTGTATAACGGATCTAGATTGGAAACT</left_flank>
        <right_flank>TGCATTCATATACTTTTTTAAAGAATTCCCAAACTGCAGTTATTTTCCAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGTGATAGTCGTGGTGTTTGGTTTTAGCTCATTGAGAGTTGGAGGTTTTGGAGCTCTAAAATTTCAAAATATGATTTTTTTTGCACCTGCGTCCCTCACTCTGGCAATCGTTTCCCAGCCAGAAAATCAGTCTCGAAAATCGAGTCCCCACTAGCACGGGGGCTCGACGAGCTATTGCGATTTGAGACTGGAGTCATTTGTTGAACGGGAATGATCTGAAATGTTGTTTTGCTCTCTTTTGCTCCTTTGGGAAAAGTTTCCAGAAAACAAACCTTTGGCTCCTCCACAAACTCTGACTCAATCATGTTGTTGAGAAGACTCCCTTCCTGAAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAACATATTCATCAGTTCATTCAGCCATTTTTATCATTTTTGAAAGTCTGAAACTCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAACGGATCTAGATTGGAAACTATGCATTCATATACTTTTTTAAAGAATTCCCAAACTGCAGTTATTTTCCATTTACTGAAAAACACCCCGTTTTGGTCAGTTTTTGCACTAAAAACGTGAAAAAAGAGGTGTCTTTCAAAAATCGGTCAATAGGTGAAAAACTAGGAAATTTCAGAAAATTATGTGAATACAAAATTTTCAATCTAGGTTTGTTTCACACTTTCTCTCCTGAAAACTGTTCAAATAGCGAAAAATCAACTGAAACATATGTTTTTGTAGTTTTTATTGAACGATACTGTAGGTTTGAAAAAATATAAATTTATTACCAAATCACGTGGATCACAAAATCCGTTCCTCGGTCCCGTCTTACTGGTTGGCGAGTTGAAGACTAGCAATTCTTGGTTTTCCGGCTCCACTGTAATTAACAAAAATTTGAAGGAAAACCAGTTATTCCCCTATCTCTCCTCTTCTCTCCTCTTCTCTCAAAACTTTCTATAATAGAATTTTCAATAAAAATGAGAT</canonical>
            <polymorphic>AGAGTGATAGTCGTGGTGTTTGGTTTTAGCTCATTGAGAGTTGGAGGTTTTGGAGCTCTAAAATTTCAAAATATGATTTTTTTTGCACCTGCGTCCCTCACTCTGGCAATCGTTTCCCAGCCAGAAAATCAGTCTCGAAAATCGAGTCCCCACTAGCACGGGGGCTCGACGAGCTATTGCGATTTGAGACTGGAGTCATTTGTTGAACGGGAATGATCTGAAATGTTGTTTTGCTCTCTTTTGCTCCTTTGGGAAAAGTTTCCAGAAAACAAACCTTTGGCTCCTCCACAAACTCTGACTCAATCATGTTGTTGAGAAGACTCCCTTCCTGAAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAACATATTCATCAGTTCATTCAGCCATTTTTATCATTTTTGAAAGTCTGAAACTCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAACGGATCTAGATTGGAAACTWTGCATTCATATACTTTTTTAAAGAATTCCCAAACTGCAGTTATTTTCCATTTACTGAAAAACACCCCGTTTTGGTCAGTTTTTGCACTAAAAACGTGAAAAAAGAGGTGTCTTTCAAAAATCGGTCAATAGGTGAAAAACTAGGAAATTTCAGAAAATTATGTGAATACAAAATTTTCAATCTAGGTTTGTTTCACACTTTCTCTCCTGAAAACTGTTCAAATAGCGAAAAATCAACTGAAACATATGTTTTTGTAGTTTTTATTGAACGATACTGTAGGTTTGAAAAAATATAAATTTATTACCAAATCACGTGGATCACAAAATCCGTTCCTCGGTCCCGTCTTACTGGTTGGCGAGTTGAAGACTAGCAATTCTTGGTTTTCCGGCTCCACTGTAATTAACAAAAATTTGAAGGAAAACCAGTTATTCCCCTATCTCTCCTCTTCTCTCCTCTTCTCTCAAAACTTTCTATAATAGAATTTTCAATAAAAATGAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATGCAT</site>
                <isoschizomers>
                    <enzyme>BfrBI</enzyme>
                    <enzyme>EcoT22I</enzyme>
                    <enzyme>Mph1103I</enzyme>
                    <enzyme>NsiI</enzyme>
                    <enzyme>Ppu10I</enzyme>
                    <enzyme>Zsp2I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCATGTTGTTGAGAAGACTCC</pcr_primer_p1>
		<pcr_primer_p2>ATCCACGTGATTTGGTAATAA</pcr_primer_p2>
		<pcr_amplicon_size>516</pcr_amplicon_size>
		<canonical_amplicon>ATCATGTTGTTGAGAAGACTCCCTTCCTGAAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAACATATTCATCAGTTCATTCAGCCATTTTTATCATTTTTGAAAGTCTGAAACTCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAACGGATCTAGATTGGAAACTATGCATTCATATACTTTTTTAAAGAATTCCCAAACTGCAGTTATTTTCCATTTACTGAAAAACACCCCGTTTTGGTCAGTTTTTGCACTAAAAACGTGAAAAAAGAGGTGTCTTTCAAAAATCGGTCAATAGGTGAAAAACTAGGAAATTTCAGAAAATTATGTGAATACAAAATTTTCAATCTAGGTTTGTTTCACACTTTCTCTCCTGAAAACTGTTCAAATAGCGAAAAATCAACTGAAACATATGTTTTTGTAGTTTTTATTGAACGATACTGTAGGTTTGAAAAAATATAAATTTATTACCAAATCACGTGGAT</canonical_amplicon>
		<polymorphic_amplicon>ATCATGTTGTTGAGAAGACTCCCTTCCTGAAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAACATATTCATCAGTTCATTCAGCCATTTTTATCATTTTTGAAAGTCTGAAACTCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAACGGATCTAGATTGGAAACTWTGCATTCATATACTTTTTTAAAGAATTCCCAAACTGCAGTTATTTTCCATTTACTGAAAAACACCCCGTTTTGGTCAGTTTTTGCACTAAAAACGTGAAAAAAGAGGTGTCTTTCAAAAATCGGTCAATAGGTGAAAAACTAGGAAATTTCAGAAAATTATGTGAATACAAAATTTTCAATCTAGGTTTGTTTCACACTTTCTCTCCTGAAAACTGTTCAAATAGCGAAAAATCAACTGAAACATATGTTTTTGTAGTTTTTATTGAACGATACTGTAGGTTTGAAAAAATATAAATTTATTACCAAATCACGTGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31507</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>196549</contig_pos>
        <strand></strand>
        <context>cttttttaaa[G/T]aattcccaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGTATAACGGATCTAGATTGGAAACTATGCATTCATATACTTTTTTAAA</left_flank>
        <right_flank>AATTCCCAAACTGCAGTTATTTTCCATTTACTGAAAAACACCCCGTTTTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTAGCTCATTGAGAGTTGGAGGTTTTGGAGCTCTAAAATTTCAAAATATGATTTTTTTTGCACCTGCGTCCCTCACTCTGGCAATCGTTTCCCAGCCAGAAAATCAGTCTCGAAAATCGAGTCCCCACTAGCACGGGGGCTCGACGAGCTATTGCGATTTGAGACTGGAGTCATTTGTTGAACGGGAATGATCTGAAATGTTGTTTTGCTCTCTTTTGCTCCTTTGGGAAAAGTTTCCAGAAAACAAACCTTTGGCTCCTCCACAAACTCTGACTCAATCATGTTGTTGAGAAGACTCCCTTCCTGAAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAACATATTCATCAGTTCATTCAGCCATTTTTATCATTTTTGAAAGTCTGAAACTCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAACGGATCTAGATTGGAAACTATGCATTCATATACTTTTTTAAAGAATTCCCAAACTGCAGTTATTTTCCATTTACTGAAAAACACCCCGTTTTGGTCAGTTTTTGCACTAAAAACGTGAAAAAAGAGGTGTCTTTCAAAAATCGGTCAATAGGTGAAAAACTAGGAAATTTCAGAAAATTATGTGAATACAAAATTTTCAATCTAGGTTTGTTTCACACTTTCTCTCCTGAAAACTGTTCAAATAGCGAAAAATCAACTGAAACATATGTTTTTGTAGTTTTTATTGAACGATACTGTAGGTTTGAAAAAATATAAATTTATTACCAAATCACGTGGATCACAAAATCCGTTCCTCGGTCCCGTCTTACTGGTTGGCGAGTTGAAGACTAGCAATTCTTGGTTTTCCGGCTCCACTGTAATTAACAAAAATTTGAAGGAAAACCAGTTATTCCCCTATCTCTCCTCTTCTCTCCTCTTCTCTCAAAACTTTCTATAATAGAATTTTCAATAAAAATGAGATAAAAAGAGAAGGAATCATGACGG</canonical>
            <polymorphic>TTTTAGCTCATTGAGAGTTGGAGGTTTTGGAGCTCTAAAATTTCAAAATATGATTTTTTTTGCACCTGCGTCCCTCACTCTGGCAATCGTTTCCCAGCCAGAAAATCAGTCTCGAAAATCGAGTCCCCACTAGCACGGGGGCTCGACGAGCTATTGCGATTTGAGACTGGAGTCATTTGTTGAACGGGAATGATCTGAAATGTTGTTTTGCTCTCTTTTGCTCCTTTGGGAAAAGTTTCCAGAAAACAAACCTTTGGCTCCTCCACAAACTCTGACTCAATCATGTTGTTGAGAAGACTCCCTTCCTGAAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAACATATTCATCAGTTCATTCAGCCATTTTTATCATTTTTGAAAGTCTGAAACTCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAACGGATCTAGATTGGAAACTATGCATTCATATACTTTTTTAAAKAATTCCCAAACTGCAGTTATTTTCCATTTACTGAAAAACACCCCGTTTTGGTCAGTTTTTGCACTAAAAACGTGAAAAAAGAGGTGTCTTTCAAAAATCGGTCAATAGGTGAAAAACTAGGAAATTTCAGAAAATTATGTGAATACAAAATTTTCAATCTAGGTTTGTTTCACACTTTCTCTCCTGAAAACTGTTCAAATAGCGAAAAATCAACTGAAACATATGTTTTTGTAGTTTTTATTGAACGATACTGTAGGTTTGAAAAAATATAAATTTATTACCAAATCACGTGGATCACAAAATCCGTTCCTCGGTCCCGTCTTACTGGTTGGCGAGTTGAAGACTAGCAATTCTTGGTTTTCCGGCTCCACTGTAATTAACAAAAATTTGAAGGAAAACCAGTTATTCCCCTATCTCTCCTCTTCTCTCCTCTTCTCTCAAAACTTTCTATAATAGAATTTTCAATAAAAATGAGATAAAAAGAGAAGGAATCATGACGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>400 123 122 113 72 62 44 38 26</canonical_bands>
                <polymorphic_bands>400 184 123 113 72 44 38 26</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCATGTTGTTGAGAAGACTCC</pcr_primer_p1>
		<pcr_primer_p2>ATCCACGTGATTTGGTAATAA</pcr_primer_p2>
		<pcr_amplicon_size>516</pcr_amplicon_size>
		<canonical_amplicon>ATCATGTTGTTGAGAAGACTCCCTTCCTGAAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAACATATTCATCAGTTCATTCAGCCATTTTTATCATTTTTGAAAGTCTGAAACTCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAACGGATCTAGATTGGAAACTATGCATTCATATACTTTTTTAAAGAATTCCCAAACTGCAGTTATTTTCCATTTACTGAAAAACACCCCGTTTTGGTCAGTTTTTGCACTAAAAACGTGAAAAAAGAGGTGTCTTTCAAAAATCGGTCAATAGGTGAAAAACTAGGAAATTTCAGAAAATTATGTGAATACAAAATTTTCAATCTAGGTTTGTTTCACACTTTCTCTCCTGAAAACTGTTCAAATAGCGAAAAATCAACTGAAACATATGTTTTTGTAGTTTTTATTGAACGATACTGTAGGTTTGAAAAAATATAAATTTATTACCAAATCACGTGGAT</canonical_amplicon>
		<polymorphic_amplicon>ATCATGTTGTTGAGAAGACTCCCTTCCTGAAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAACATATTCATCAGTTCATTCAGCCATTTTTATCATTTTTGAAAGTCTGAAACTCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAACGGATCTAGATTGGAAACTATGCATTCATATACTTTTTTAAAKAATTCCCAAACTGCAGTTATTTTCCATTTACTGAAAAACACCCCGTTTTGGTCAGTTTTTGCACTAAAAACGTGAAAAAAGAGGTGTCTTTCAAAAATCGGTCAATAGGTGAAAAACTAGGAAATTTCAGAAAATTATGTGAATACAAAATTTTCAATCTAGGTTTGTTTCACACTTTCTCTCCTGAAAACTGTTCAAATAGCGAAAAATCAACTGAAACATATGTTTTTGTAGTTTTTATTGAACGATACTGTAGGTTTGAAAAAATATAAATTTATTACCAAATCACGTGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31508</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>196578</contig_pos>
        <strand></strand>
        <context>attttccatt[T/C]actgaaaaac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCATTCATATACTTTTTTAAAGAATTCCCAAACTGCAGTTATTTTCCATT</left_flank>
        <right_flank>ACTGAAAAACACCCCGTTTTGGTCAGTTTTTGCACTAAAAACGTGAAAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCTCTAAAATTTCAAAATATGATTTTTTTTGCACCTGCGTCCCTCACTCTGGCAATCGTTTCCCAGCCAGAAAATCAGTCTCGAAAATCGAGTCCCCACTAGCACGGGGGCTCGACGAGCTATTGCGATTTGAGACTGGAGTCATTTGTTGAACGGGAATGATCTGAAATGTTGTTTTGCTCTCTTTTGCTCCTTTGGGAAAAGTTTCCAGAAAACAAACCTTTGGCTCCTCCACAAACTCTGACTCAATCATGTTGTTGAGAAGACTCCCTTCCTGAAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAACATATTCATCAGTTCATTCAGCCATTTTTATCATTTTTGAAAGTCTGAAACTCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAACGGATCTAGATTGGAAACTATGCATTCATATACTTTTTTAAAGAATTCCCAAACTGCAGTTATTTTCCATTTACTGAAAAACACCCCGTTTTGGTCAGTTTTTGCACTAAAAACGTGAAAAAAGAGGTGTCTTTCAAAAATCGGTCAATAGGTGAAAAACTAGGAAATTTCAGAAAATTATGTGAATACAAAATTTTCAATCTAGGTTTGTTTCACACTTTCTCTCCTGAAAACTGTTCAAATAGCGAAAAATCAACTGAAACATATGTTTTTGTAGTTTTTATTGAACGATACTGTAGGTTTGAAAAAATATAAATTTATTACCAAATCACGTGGATCACAAAATCCGTTCCTCGGTCCCGTCTTACTGGTTGGCGAGTTGAAGACTAGCAATTCTTGGTTTTCCGGCTCCACTGTAATTAACAAAAATTTGAAGGAAAACCAGTTATTCCCCTATCTCTCCTCTTCTCTCCTCTTCTCTCAAAACTTTCTATAATAGAATTTTCAATAAAAATGAGATAAAAAGAGAAGGAATCATGACGGGGAAGGATCACACGGGTGAAGTGGCCAAG</canonical>
            <polymorphic>GAGCTCTAAAATTTCAAAATATGATTTTTTTTGCACCTGCGTCCCTCACTCTGGCAATCGTTTCCCAGCCAGAAAATCAGTCTCGAAAATCGAGTCCCCACTAGCACGGGGGCTCGACGAGCTATTGCGATTTGAGACTGGAGTCATTTGTTGAACGGGAATGATCTGAAATGTTGTTTTGCTCTCTTTTGCTCCTTTGGGAAAAGTTTCCAGAAAACAAACCTTTGGCTCCTCCACAAACTCTGACTCAATCATGTTGTTGAGAAGACTCCCTTCCTGAAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAACATATTCATCAGTTCATTCAGCCATTTTTATCATTTTTGAAAGTCTGAAACTCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAACGGATCTAGATTGGAAACTATGCATTCATATACTTTTTTAAAGAATTCCCAAACTGCAGTTATTTTCCATTYACTGAAAAACACCCCGTTTTGGTCAGTTTTTGCACTAAAAACGTGAAAAAAGAGGTGTCTTTCAAAAATCGGTCAATAGGTGAAAAACTAGGAAATTTCAGAAAATTATGTGAATACAAAATTTTCAATCTAGGTTTGTTTCACACTTTCTCTCCTGAAAACTGTTCAAATAGCGAAAAATCAACTGAAACATATGTTTTTGTAGTTTTTATTGAACGATACTGTAGGTTTGAAAAAATATAAATTTATTACCAAATCACGTGGATCACAAAATCCGTTCCTCGGTCCCGTCTTACTGGTTGGCGAGTTGAAGACTAGCAATTCTTGGTTTTCCGGCTCCACTGTAATTAACAAAAATTTGAAGGAAAACCAGTTATTCCCCTATCTCTCCTCTTCTCTCCTCTTCTCTCAAAACTTTCTATAATAGAATTTTCAATAAAAATGAGATAAAAAGAGAAGGAATCATGACGGGGAAGGATCACACGGGTGAAGTGGCCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCATGTTGTTGAGAAGACTCC</pcr_primer_p1>
		<pcr_primer_p2>ATCCACGTGATTTGGTAATAA</pcr_primer_p2>
		<pcr_amplicon_size>516</pcr_amplicon_size>
		<canonical_amplicon>ATCATGTTGTTGAGAAGACTCCCTTCCTGAAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAACATATTCATCAGTTCATTCAGCCATTTTTATCATTTTTGAAAGTCTGAAACTCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAACGGATCTAGATTGGAAACTATGCATTCATATACTTTTTTAAAGAATTCCCAAACTGCAGTTATTTTCCATTTACTGAAAAACACCCCGTTTTGGTCAGTTTTTGCACTAAAAACGTGAAAAAAGAGGTGTCTTTCAAAAATCGGTCAATAGGTGAAAAACTAGGAAATTTCAGAAAATTATGTGAATACAAAATTTTCAATCTAGGTTTGTTTCACACTTTCTCTCCTGAAAACTGTTCAAATAGCGAAAAATCAACTGAAACATATGTTTTTGTAGTTTTTATTGAACGATACTGTAGGTTTGAAAAAATATAAATTTATTACCAAATCACGTGGAT</canonical_amplicon>
		<polymorphic_amplicon>ATCATGTTGTTGAGAAGACTCCCTTCCTGAAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAACATATTCATCAGTTCATTCAGCCATTTTTATCATTTTTGAAAGTCTGAAACTCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAACGGATCTAGATTGGAAACTATGCATTCATATACTTTTTTAAAGAATTCCCAAACTGCAGTTATTTTCCATTYACTGAAAAACACCCCGTTTTGGTCAGTTTTTGCACTAAAAACGTGAAAAAAGAGGTGTCTTTCAAAAATCGGTCAATAGGTGAAAAACTAGGAAATTTCAGAAAATTATGTGAATACAAAATTTTCAATCTAGGTTTGTTTCACACTTTCTCTCCTGAAAACTGTTCAAATAGCGAAAAATCAACTGAAACATATGTTTTTGTAGTTTTTATTGAACGATACTGTAGGTTTGAAAAAATATAAATTTATTACCAAATCACGTGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31509</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>196643</contig_pos>
        <strand></strand>
        <context>gtgtctttca[A/G]aaatcggtca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTTTTGGTCAGTTTTTGCACTAAAAACGTGAAAAAAGAGGTGTCTTTCA</left_flank>
        <right_flank>AAATCGGTCAATAGGTGAAAAACTAGGAAATTTCAGAAAATTATGTGAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCCAGAAAATCAGTCTCGAAAATCGAGTCCCCACTAGCACGGGGGCTCGACGAGCTATTGCGATTTGAGACTGGAGTCATTTGTTGAACGGGAATGATCTGAAATGTTGTTTTGCTCTCTTTTGCTCCTTTGGGAAAAGTTTCCAGAAAACAAACCTTTGGCTCCTCCACAAACTCTGACTCAATCATGTTGTTGAGAAGACTCCCTTCCTGAAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAACATATTCATCAGTTCATTCAGCCATTTTTATCATTTTTGAAAGTCTGAAACTCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAACGGATCTAGATTGGAAACTATGCATTCATATACTTTTTTAAAGAATTCCCAAACTGCAGTTATTTTCCATTTACTGAAAAACACCCCGTTTTGGTCAGTTTTTGCACTAAAAACGTGAAAAAAGAGGTGTCTTTCAAAAATCGGTCAATAGGTGAAAAACTAGGAAATTTCAGAAAATTATGTGAATACAAAATTTTCAATCTAGGTTTGTTTCACACTTTCTCTCCTGAAAACTGTTCAAATAGCGAAAAATCAACTGAAACATATGTTTTTGTAGTTTTTATTGAACGATACTGTAGGTTTGAAAAAATATAAATTTATTACCAAATCACGTGGATCACAAAATCCGTTCCTCGGTCCCGTCTTACTGGTTGGCGAGTTGAAGACTAGCAATTCTTGGTTTTCCGGCTCCACTGTAATTAACAAAAATTTGAAGGAAAACCAGTTATTCCCCTATCTCTCCTCTTCTCTCCTCTTCTCTCAAAACTTTCTATAATAGAATTTTCAATAAAAATGAGATAAAAAGAGAAGGAATCATGACGGGGAAGGATCACACGGGTGAAGTGGCCAAGTAAAAAAAGTCAAGTAAACTCACAATGGACTCTTTCTGCTGCCGGGGCTCGATTGCCACCCCTTG</canonical>
            <polymorphic>CAGCCAGAAAATCAGTCTCGAAAATCGAGTCCCCACTAGCACGGGGGCTCGACGAGCTATTGCGATTTGAGACTGGAGTCATTTGTTGAACGGGAATGATCTGAAATGTTGTTTTGCTCTCTTTTGCTCCTTTGGGAAAAGTTTCCAGAAAACAAACCTTTGGCTCCTCCACAAACTCTGACTCAATCATGTTGTTGAGAAGACTCCCTTCCTGAAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAACATATTCATCAGTTCATTCAGCCATTTTTATCATTTTTGAAAGTCTGAAACTCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAACGGATCTAGATTGGAAACTATGCATTCATATACTTTTTTAAAGAATTCCCAAACTGCAGTTATTTTCCATTTACTGAAAAACACCCCGTTTTGGTCAGTTTTTGCACTAAAAACGTGAAAAAAGAGGTGTCTTTCARAAATCGGTCAATAGGTGAAAAACTAGGAAATTTCAGAAAATTATGTGAATACAAAATTTTCAATCTAGGTTTGTTTCACACTTTCTCTCCTGAAAACTGTTCAAATAGCGAAAAATCAACTGAAACATATGTTTTTGTAGTTTTTATTGAACGATACTGTAGGTTTGAAAAAATATAAATTTATTACCAAATCACGTGGATCACAAAATCCGTTCCTCGGTCCCGTCTTACTGGTTGGCGAGTTGAAGACTAGCAATTCTTGGTTTTCCGGCTCCACTGTAATTAACAAAAATTTGAAGGAAAACCAGTTATTCCCCTATCTCTCCTCTTCTCTCCTCTTCTCTCAAAACTTTCTATAATAGAATTTTCAATAAAAATGAGATAAAAAGAGAAGGAATCATGACGGGGAAGGATCACACGGGTGAAGTGGCCAAGTAAAAAAAGTCAAGTAAACTCACAATGGACTCTTTCTGCTGCCGGGGCTCGATTGCCACCCCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCATGTTGTTGAGAAGACTCC</pcr_primer_p1>
		<pcr_primer_p2>ATCCACGTGATTTGGTAATAA</pcr_primer_p2>
		<pcr_amplicon_size>516</pcr_amplicon_size>
		<canonical_amplicon>ATCATGTTGTTGAGAAGACTCCCTTCCTGAAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAACATATTCATCAGTTCATTCAGCCATTTTTATCATTTTTGAAAGTCTGAAACTCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAACGGATCTAGATTGGAAACTATGCATTCATATACTTTTTTAAAGAATTCCCAAACTGCAGTTATTTTCCATTTACTGAAAAACACCCCGTTTTGGTCAGTTTTTGCACTAAAAACGTGAAAAAAGAGGTGTCTTTCAAAAATCGGTCAATAGGTGAAAAACTAGGAAATTTCAGAAAATTATGTGAATACAAAATTTTCAATCTAGGTTTGTTTCACACTTTCTCTCCTGAAAACTGTTCAAATAGCGAAAAATCAACTGAAACATATGTTTTTGTAGTTTTTATTGAACGATACTGTAGGTTTGAAAAAATATAAATTTATTACCAAATCACGTGGAT</canonical_amplicon>
		<polymorphic_amplicon>ATCATGTTGTTGAGAAGACTCCCTTCCTGAAATAAAACATTTCATGACTACAGTACCGGTCATAAAGATATATAAAAACATATTCATCAGTTCATTCAGCCATTTTTATCATTTTTGAAAGTCTGAAACTCGGCTCTCAGGAACTCGGATCACTTTGAAAATTTTGAAGAGTGTATAACGGATCTAGATTGGAAACTATGCATTCATATACTTTTTTAAAGAATTCCCAAACTGCAGTTATTTTCCATTTACTGAAAAACACCCCGTTTTGGTCAGTTTTTGCACTAAAAACGTGAAAAAAGAGGTGTCTTTCARAAATCGGTCAATAGGTGAAAAACTAGGAAATTTCAGAAAATTATGTGAATACAAAATTTTCAATCTAGGTTTGTTTCACACTTTCTCTCCTGAAAACTGTTCAAATAGCGAAAAATCAACTGAAACATATGTTTTTGTAGTTTTTATTGAACGATACTGTAGGTTTGAAAAAATATAAATTTATTACCAAATCACGTGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31510</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>198708</contig_pos>
        <strand>+</strand>
        <context>GCTTAATGGA[A/G]KTYAAAGAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGA</left_flank>
        <right_flank>TTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACTTACTGGCAAACACTGGAACTTCGGTCTCTTTCACCTGCGGATCCTCGGTGATAATCTTGCTGGCTTTCAATGACTCATAAACCTGCTTGTACTTCTCTATGTGCTTAATGGATAGCTGCCAGATGAACAACAATTTGATTATTTCCGTTTTCAGCGCGTCACTTGTAAATTTCCCATTGTATTTGGGAGCAATCAGTCTGACAAGCTCGTTTAGGAATTTGTAACGACCACATCGCTCATGAACCTTCTCTCCACCATTTCGCACCAAATAGTCGAGAGCCTACAAGTTATTCATGAATTCCCGATTTGTTTCAATGCTCTTACATGGATCGTAAGCATCGCTTCCTCTTGGCAAGGGCTCGATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAATTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATGAATACTCTCAATGATGAAATCAAGCGCTTTTATTCTCTCATCCTCAGTCACGAATCTGTCTGTGGCTTTGCCTGAAAGAAATCATCAATCCCACTAGACCCATTTATTGAATATGTCACTTACAAACCCAGTAGTCGATGGCACGCGTCGGTTCGACCACTTGCTCCGTCATAGCAGCGGCTCAAACGTTCAAGAGAGGCCGACAAAAAAGTAGAAGAAAGAAACTCGACGTATTCAGCCACTAAAAGCCCCACAAGAAGTAGAAGAAGGGGGGACGGGCTCAAAATGAAGCCCGGGGCTAGAATAGGAGAGAGAGAGAGAGGCGGGTGCTCCTCGTCGCTCTATCGATCTGCGTCTTGTTTCCCTCTCAACTCATCATCTTG</canonical>
            <polymorphic>TGACTTACTGGCAAACACTGGAACTTCGGTCTCTTTCACCTGCGGATCCTCGGTGATAATCTTGCTGGCTTTCAATGACTCATAAACCTGCTTGTACTTCTCTATGTGCTTAATGGATAGCTGCCAGATGAACAACAATTTGATTATTTCCGTTTTCAGCGCGTCACTTGTAAATTTCCCATTGTATTTGGGAGCAATCAGTCTGACAAGCTCGTTTAGGAATTTGTAACGACCACATCGCTCATGAACCTTCTCTCCACCATTTCGCACCAAATAGTCGAGAGCCTACAAGTTATTCATGAATTCCCGATTTGTTTCAATGCTCTTACATGGATCGTAAGCATCGCTTCCTCTTGGCAAGGGCTCGATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGARTTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATGAATACTCTCAATGATGAAATCAAGCGCTTTTATTCTCTCATCCTCAGTCACGAATCTGTCTGTGGCTTTGCCTGAAAGAAATCATCAATCCCACTAGACCCATTTATTGAATATGTCACTTACAAACCCAGTAGTCGATGGCACGCGTCGGTTCGACCACTTGCTCCGTCATAGCAGCGGCTCAAACGTTCAAGAGAGGCCGACAAAAAAGTAGAAGAAAGAAACTCGACGTATTCAGCCACTAAAAGCCCCACAAGAAGTAGAAGAAGGGGGGACGGGCTCAAAATGAAGCCCGGGGCTAGAATAGGAGAGAGAGAGAGAGGCGGGTGCTCCTCGTCGCTCTATCGATCTGCGTCTTGTTTCCCTCTCAACTCATCATCTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>502 197 172 81 48</canonical_bands>
                <polymorphic_bands>699 172 81 48</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>502 197 136 81 48 36</canonical_bands>
                <polymorphic_bands>699 136 81 48 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAGTTTGTGCGAAAACAAGTC</pcr_primer_p1>
		<pcr_primer_p2>CATAAGGAAGTAGGTTTGGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAATTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATG</canonical_amplicon>
		<polymorphic_amplicon>ATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGARTTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31511</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>198709</contig_pos>
        <strand>+</strand>
        <context>CTTAATGGAR[G/T]TYAAAGAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAA</left_flank>
        <right_flank>TTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTAT</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACTTACTGGCAAACACTGGAACTTCGGTCTCTTTCACCTGCGGATCCTCGGTGATAATCTTGCTGGCTTTCAATGACTCATAAACCTGCTTGTACTTCTCTATGTGCTTAATGGATAGCTGCCAGATGAACAACAATTTGATTATTTCCGTTTTCAGCGCGTCACTTGTAAATTTCCCATTGTATTTGGGAGCAATCAGTCTGACAAGCTCGTTTAGGAATTTGTAACGACCACATCGCTCATGAACCTTCTCTCCACCATTTCGCACCAAATAGTCGAGAGCCTACAAGTTATTCATGAATTCCCGATTTGTTTCAATGCTCTTACATGGATCGTAAGCATCGCTTCCTCTTGGCAAGGGCTCGATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAATTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATGAATACTCTCAATGATGAAATCAAGCGCTTTTATTCTCTCATCCTCAGTCACGAATCTGTCTGTGGCTTTGCCTGAAAGAAATCATCAATCCCACTAGACCCATTTATTGAATATGTCACTTACAAACCCAGTAGTCGATGGCACGCGTCGGTTCGACCACTTGCTCCGTCATAGCAGCGGCTCAAACGTTCAAGAGAGGCCGACAAAAAAGTAGAAGAAAGAAACTCGACGTATTCAGCCACTAAAAGCCCCACAAGAAGTAGAAGAAGGGGGGACGGGCTCAAAATGAAGCCCGGGGCTAGAATAGGAGAGAGAGAGAGAGGCGGGTGCTCCTCGTCGCTCTATCGATCTGCGTCTTGTTTCCCTCTCAACTCATCATCTTGC</canonical>
            <polymorphic>GACTTACTGGCAAACACTGGAACTTCGGTCTCTTTCACCTGCGGATCCTCGGTGATAATCTTGCTGGCTTTCAATGACTCATAAACCTGCTTGTACTTCTCTATGTGCTTAATGGATAGCTGCCAGATGAACAACAATTTGATTATTTCCGTTTTCAGCGCGTCACTTGTAAATTTCCCATTGTATTTGGGAGCAATCAGTCTGACAAGCTCGTTTAGGAATTTGTAACGACCACATCGCTCATGAACCTTCTCTCCACCATTTCGCACCAAATAGTCGAGAGCCTACAAGTTATTCATGAATTCCCGATTTGTTTCAATGCTCTTACATGGATCGTAAGCATCGCTTCCTCTTGGCAAGGGCTCGATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAAKTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATGAATACTCTCAATGATGAAATCAAGCGCTTTTATTCTCTCATCCTCAGTCACGAATCTGTCTGTGGCTTTGCCTGAAAGAAATCATCAATCCCACTAGACCCATTTATTGAATATGTCACTTACAAACCCAGTAGTCGATGGCACGCGTCGGTTCGACCACTTGCTCCGTCATAGCAGCGGCTCAAACGTTCAAGAGAGGCCGACAAAAAAGTAGAAGAAAGAAACTCGACGTATTCAGCCACTAAAAGCCCCACAAGAAGTAGAAGAAGGGGGGACGGGCTCAAAATGAAGCCCGGGGCTAGAATAGGAGAGAGAGAGAGAGGCGGGTGCTCCTCGTCGCTCTATCGATCTGCGTCTTGTTTCCCTCTCAACTCATCATCTTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>503 197 171 81 48</canonical_bands>
                <polymorphic_bands>700 171 81 48</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>503 197 135 81 48 36</canonical_bands>
                <polymorphic_bands>700 135 81 48 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAGTTTGTGCGAAAACAAGTC</pcr_primer_p1>
		<pcr_primer_p2>CATAAGGAAGTAGGTTTGGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAATTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATG</canonical_amplicon>
		<polymorphic_amplicon>ATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAAKTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31512</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>198757</contig_pos>
        <strand>+</strand>
        <context>ATTTATCTTC[A/T]ATTCAGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTC</left_flank>
        <right_flank>ATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGTGATAATCTTGCTGGCTTTCAATGACTCATAAACCTGCTTGTACTTCTCTATGTGCTTAATGGATAGCTGCCAGATGAACAACAATTTGATTATTTCCGTTTTCAGCGCGTCACTTGTAAATTTCCCATTGTATTTGGGAGCAATCAGTCTGACAAGCTCGTTTAGGAATTTGTAACGACCACATCGCTCATGAACCTTCTCTCCACCATTTCGCACCAAATAGTCGAGAGCCTACAAGTTATTCATGAATTCCCGATTTGTTTCAATGCTCTTACATGGATCGTAAGCATCGCTTCCTCTTGGCAAGGGCTCGATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAATTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATGAATACTCTCAATGATGAAATCAAGCGCTTTTATTCTCTCATCCTCAGTCACGAATCTGTCTGTGGCTTTGCCTGAAAGAAATCATCAATCCCACTAGACCCATTTATTGAATATGTCACTTACAAACCCAGTAGTCGATGGCACGCGTCGGTTCGACCACTTGCTCCGTCATAGCAGCGGCTCAAACGTTCAAGAGAGGCCGACAAAAAAGTAGAAGAAAGAAACTCGACGTATTCAGCCACTAAAAGCCCCACAAGAAGTAGAAGAAGGGGGGACGGGCTCAAAATGAAGCCCGGGGCTAGAATAGGAGAGAGAGAGAGAGGCGGGTGCTCCTCGTCGCTCTATCGATCTGCGTCTTGTTTCCCTCTCAACTCATCATCTTGCTCCTTGTGTCGAGCTTCATCTAGGAAAAACGGGAGCGAGCTCATGCAA</canonical>
            <polymorphic>TCGGTGATAATCTTGCTGGCTTTCAATGACTCATAAACCTGCTTGTACTTCTCTATGTGCTTAATGGATAGCTGCCAGATGAACAACAATTTGATTATTTCCGTTTTCAGCGCGTCACTTGTAAATTTCCCATTGTATTTGGGAGCAATCAGTCTGACAAGCTCGTTTAGGAATTTGTAACGACCACATCGCTCATGAACCTTCTCTCCACCATTTCGCACCAAATAGTCGAGAGCCTACAAGTTATTCATGAATTCCCGATTTGTTTCAATGCTCTTACATGGATCGTAAGCATCGCTTCCTCTTGGCAAGGGCTCGATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAATTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCWATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATGAATACTCTCAATGATGAAATCAAGCGCTTTTATTCTCTCATCCTCAGTCACGAATCTGTCTGTGGCTTTGCCTGAAAGAAATCATCAATCCCACTAGACCCATTTATTGAATATGTCACTTACAAACCCAGTAGTCGATGGCACGCGTCGGTTCGACCACTTGCTCCGTCATAGCAGCGGCTCAAACGTTCAAGAGAGGCCGACAAAAAAGTAGAAGAAAGAAACTCGACGTATTCAGCCACTAAAAGCCCCACAAGAAGTAGAAGAAGGGGGGACGGGCTCAAAATGAAGCCCGGGGCTAGAATAGGAGAGAGAGAGAGAGGCGGGTGCTCCTCGTCGCTCTATCGATCTGCGTCTTGTTTCCCTCTCAACTCATCATCTTGCTCCTTGTGTCGAGCTTCATCTAGGAAAAACGGGAGCGAGCTCATGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGTTTGTGCGAAAACAAGTC</pcr_primer_p1>
		<pcr_primer_p2>CATAAGGAAGTAGGTTTGGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAATTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATG</canonical_amplicon>
		<polymorphic_amplicon>ATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAATTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCWATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31513</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>198772</contig_pos>
        <strand>+</strand>
        <context>AGAAAAACTT[C/T]RCATAATAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTT</left_flank>
        <right_flank>GCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTT</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGGCTTTCAATGACTCATAAACCTGCTTGTACTTCTCTATGTGCTTAATGGATAGCTGCCAGATGAACAACAATTTGATTATTTCCGTTTTCAGCGCGTCACTTGTAAATTTCCCATTGTATTTGGGAGCAATCAGTCTGACAAGCTCGTTTAGGAATTTGTAACGACCACATCGCTCATGAACCTTCTCTCCACCATTTCGCACCAAATAGTCGAGAGCCTACAAGTTATTCATGAATTCCCGATTTGTTTCAATGCTCTTACATGGATCGTAAGCATCGCTTCCTCTTGGCAAGGGCTCGATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAATTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATGAATACTCTCAATGATGAAATCAAGCGCTTTTATTCTCTCATCCTCAGTCACGAATCTGTCTGTGGCTTTGCCTGAAAGAAATCATCAATCCCACTAGACCCATTTATTGAATATGTCACTTACAAACCCAGTAGTCGATGGCACGCGTCGGTTCGACCACTTGCTCCGTCATAGCAGCGGCTCAAACGTTCAAGAGAGGCCGACAAAAAAGTAGAAGAAAGAAACTCGACGTATTCAGCCACTAAAAGCCCCACAAGAAGTAGAAGAAGGGGGGACGGGCTCAAAATGAAGCCCGGGGCTAGAATAGGAGAGAGAGAGAGAGGCGGGTGCTCCTCGTCGCTCTATCGATCTGCGTCTTGTTTCCCTCTCAACTCATCATCTTGCTCCTTGTGTCGAGCTTCATCTAGGAAAAACGGGAGCGAGCTCATGCAATGAGTGCCCCTTCTG</canonical>
            <polymorphic>CTGGCTTTCAATGACTCATAAACCTGCTTGTACTTCTCTATGTGCTTAATGGATAGCTGCCAGATGAACAACAATTTGATTATTTCCGTTTTCAGCGCGTCACTTGTAAATTTCCCATTGTATTTGGGAGCAATCAGTCTGACAAGCTCGTTTAGGAATTTGTAACGACCACATCGCTCATGAACCTTCTCTCCACCATTTCGCACCAAATAGTCGAGAGCCTACAAGTTATTCATGAATTCCCGATTTGTTTCAATGCTCTTACATGGATCGTAAGCATCGCTTCCTCTTGGCAAGGGCTCGATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAATTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTYGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATGAATACTCTCAATGATGAAATCAAGCGCTTTTATTCTCTCATCCTCAGTCACGAATCTGTCTGTGGCTTTGCCTGAAAGAAATCATCAATCCCACTAGACCCATTTATTGAATATGTCACTTACAAACCCAGTAGTCGATGGCACGCGTCGGTTCGACCACTTGCTCCGTCATAGCAGCGGCTCAAACGTTCAAGAGAGGCCGACAAAAAAGTAGAAGAAAGAAACTCGACGTATTCAGCCACTAAAAGCCCCACAAGAAGTAGAAGAAGGGGGGACGGGCTCAAAATGAAGCCCGGGGCTAGAATAGGAGAGAGAGAGAGAGGCGGGTGCTCCTCGTCGCTCTATCGATCTGCGTCTTGTTTCCCTCTCAACTCATCATCTTGCTCCTTGTGTCGAGCTTCATCTAGGAAAAACGGGAGCGAGCTCATGCAATGAGTGCCCCTTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>481 385 116 18</canonical_bands>
                <polymorphic_bands>597 385 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAGTTTGTGCGAAAACAAGTC</pcr_primer_p1>
		<pcr_primer_p2>CATAAGGAAGTAGGTTTGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAATTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATG</canonical_amplicon>
		<polymorphic_amplicon>ATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAATTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTYGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31514</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>198773</contig_pos>
        <strand>+</strand>
        <context>GAAAAACTTY[A/G]CATAATAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTT</left_flank>
        <right_flank>CATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGCTTTCAATGACTCATAAACCTGCTTGTACTTCTCTATGTGCTTAATGGATAGCTGCCAGATGAACAACAATTTGATTATTTCCGTTTTCAGCGCGTCACTTGTAAATTTCCCATTGTATTTGGGAGCAATCAGTCTGACAAGCTCGTTTAGGAATTTGTAACGACCACATCGCTCATGAACCTTCTCTCCACCATTTCGCACCAAATAGTCGAGAGCCTACAAGTTATTCATGAATTCCCGATTTGTTTCAATGCTCTTACATGGATCGTAAGCATCGCTTCCTCTTGGCAAGGGCTCGATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAATTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATGAATACTCTCAATGATGAAATCAAGCGCTTTTATTCTCTCATCCTCAGTCACGAATCTGTCTGTGGCTTTGCCTGAAAGAAATCATCAATCCCACTAGACCCATTTATTGAATATGTCACTTACAAACCCAGTAGTCGATGGCACGCGTCGGTTCGACCACTTGCTCCGTCATAGCAGCGGCTCAAACGTTCAAGAGAGGCCGACAAAAAAGTAGAAGAAAGAAACTCGACGTATTCAGCCACTAAAAGCCCCACAAGAAGTAGAAGAAGGGGGGACGGGCTCAAAATGAAGCCCGGGGCTAGAATAGGAGAGAGAGAGAGAGGCGGGTGCTCCTCGTCGCTCTATCGATCTGCGTCTTGTTTCCCTCTCAACTCATCATCTTGCTCCTTGTGTCGAGCTTCATCTAGGAAAAACGGGAGCGAGCTCATGCAATGAGTGCCCCTTCTGT</canonical>
            <polymorphic>TGGCTTTCAATGACTCATAAACCTGCTTGTACTTCTCTATGTGCTTAATGGATAGCTGCCAGATGAACAACAATTTGATTATTTCCGTTTTCAGCGCGTCACTTGTAAATTTCCCATTGTATTTGGGAGCAATCAGTCTGACAAGCTCGTTTAGGAATTTGTAACGACCACATCGCTCATGAACCTTCTCTCCACCATTTCGCACCAAATAGTCGAGAGCCTACAAGTTATTCATGAATTCCCGATTTGTTTCAATGCTCTTACATGGATCGTAAGCATCGCTTCCTCTTGGCAAGGGCTCGATAGTTTGTGCGAAAACAAGTCGACGGCTAGAAGAGCACTGGCTGGCTGAAAAACAATAGGCTATCACTTAATGTGACTCTGCATTTGTAATCAGAAACATGATTTTTAATCAAATGACAAGGCTTAATGGAATTTAAAGAACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTRCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATGAATACTCTCAATGATGAAATCAAGCGCTTTTATTCTCTCATCCTCAGTCACGAATCTGTCTGTGGCTTTGCCTGAAAGAAATCATCAATCCCACTAGACCCATTTATTGAATATGTCACTTACAAACCCAGTAGTCGATGGCACGCGTCGGTTCGACCACTTGCTCCGTCATAGCAGCGGCTCAAACGTTCAAGAGAGGCCGACAAAAAAGTAGAAGAAAGAAACTCGACGTATTCAGCCACTAAAAGCCCCACAAGAAGTAGAAGAAGGGGGGACGGGCTCAAAATGAAGCCCGGGGCTAGAATAGGAGAGAGAGAGAGAGGCGGGTGCTCCTCGTCGCTCTATCGATCTGCGTCTTGTTTCCCTCTCAACTCATCATCTTGCTCCTTGTGTCGAGCTTCATCTAGGAAAAACGGGAGCGAGCTCATGCAATGAGTGCCCCTTCTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>481 384 116 19</canonical_bands>
                <polymorphic_bands>597 384 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTTTCTCTTAAGACTTTCTTCTGT</pcr_primer_p1>
		<pcr_primer_p2>ACTACTGGGTTTGTAAGTGACAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTGCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATGAATACTCTCAATGATGAAATCAAGCGCTTTTATTCTCTCATCCTCAGTCACGAATCTGTCTGTGGCTTTGCCTGAAAGAAATCATCAATCCCACTAGACCCATTTATTGAATATGTCACTTACAAACCCAGTAGT</canonical_amplicon>
		<polymorphic_amplicon>AACTTTCTCTTAAGACTTTCTTCTGTTATTCATTTATCTTCTATTCAGAAAAACTTTRCATAATAAAAAACATATTCGAAAAGAAAAAGAACCAAACCTACTTCCTTATGAATACTCTCAATGATGAAATCAAGCGCTTTTATTCTCTCATCCTCAGTCACGAATCTGTCTGTGGCTTTGCCTGAAAGAAATCATCAATCCCACTAGACCCATTTATTGAATATGTCACTTACAAACCCAGTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31515</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>201372</contig_pos>
        <strand></strand>
        <context>attcggttga[C/T]agtttctgaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTACAGAAAAGTTGACAACTGCAAGAAATAGAGTTCTATATTCGGTTGA</left_flank>
        <right_flank>AGTTTCTGAAATTTTCAGAACAAACGGGCAAATTTAAAGTACTCTTTGAG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATTAATCTTCATGATCTGGACTGAGTCGATTGTACTTTTTCTTGACAAAAATATAATCTTCAGAAATTGTTGTGAACAAAAATTCCACGGAGCTTAAAAATGTTTTATCTTTTGAACGAAAAGCTGCTCGCAGAATAAATTTTTTGTACTTAGAGCTGCAGTGGTGGCCAGATTGTTGTTCAGAAATTCCCGCTTCAAGAGAAAACGCTCAATGTGGGATGACTAAAAAGTATTTATCACCTGTCAGCTTGTTCTGAAAGTTCCATGGACTATAGAACAAACAAAGAAACTTATTTTTGTAATTGACAACTTTTTTGCTGAAACACTTGCTGGAGAGACATTTAATGTCAAACATAAAAAATCTAGAAATTCTAAAAATTGTCAGGGAAACTGAGAAAAAAAACAATTGTTTTACGAAGCTTATCATTTTGGCAAGTTCAAAAGTTAAGTACAGAAAAGTTGACAACTGCAAGAAATAGAGTTCTATATTCGGTTGACAGTTTCTGAAATTTTCAGAACAAACGGGCAAATTTAAAGTACTCTTTGAGACACTTAAGACTGACCATATTCAACTCAAGTTTTCTATTTTTGTGTGACGTTTCGGCTAGCACTGTATCAAATTCTATGTCTCATAGATTTTCAGTGATTTTTTGTAATCTTGTAACGAAAAACATTTGATCTTAAATACAAATTTTCAAAATTGAAATCATCTGTAGTACCGGTCAATATGATCTGCAAAAACGTATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACAGAACTTAGTGAAATTTGCTTTTTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCCCGTTTTTGTACTGAAAGCGTTTCAATTTTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAGTTTTCGAAGAACTCAAAGTTTTGAGAGATTCCCAACAGTACCACCTGATCTTCTTATTTTTTAAAATTTATTTTATTATTTTTTAAATTCAT</canonical>
            <polymorphic>AGATTAATCTTCATGATCTGGACTGAGTCGATTGTACTTTTTCTTGACAAAAATATAATCTTCAGAAATTGTTGTGAACAAAAATTCCACGGAGCTTAAAAATGTTTTATCTTTTGAACGAAAAGCTGCTCGCAGAATAAATTTTTTGTACTTAGAGCTGCAGTGGTGGCCAGATTGTTGTTCAGAAATTCCCGCTTCAAGAGAAAACGCTCAATGTGGGATGACTAAAAAGTATTTATCACCTGTCAGCTTGTTCTGAAAGTTCCATGGACTATAGAACAAACAAAGAAACTTATTTTTGTAATTGACAACTTTTTTGCTGAAACACTTGCTGGAGAGACATTTAATGTCAAACATAAAAAATCTAGAAATTCTAAAAATTGTCAGGGAAACTGAGAAAAAAAACAATTGTTTTACGAAGCTTATCATTTTGGCAAGTTCAAAAGTTAAGTACAGAAAAGTTGACAACTGCAAGAAATAGAGTTCTATATTCGGTTGAYAGTTTCTGAAATTTTCAGAACAAACGGGCAAATTTAAAGTACTCTTTGAGACACTTAAGACTGACCATATTCAACTCAAGTTTTCTATTTTTGTGTGACGTTTCGGCTAGCACTGTATCAAATTCTATGTCTCATAGATTTTCAGTGATTTTTTGTAATCTTGTAACGAAAAACATTTGATCTTAAATACAAATTTTCAAAATTGAAATCATCTGTAGTACCGGTCAATATGATCTGCAAAAACGTATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACAGAACTTAGTGAAATTTGCTTTTTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCCCGTTTTTGTACTGAAAGCGTTTCAATTTTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAGTTTTCGAAGAACTCAAAGTTTTGAGAGATTCCCAACAGTACCACCTGATCTTCTTATTTTTTAAAATTTATTTTATTATTTTTTAAATTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAGNNNCTG</site>
                <isoschizomers>
                    <enzyme>AlwNI</enzyme>
                    <enzyme>CaiI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 293 113 55 38</canonical_bands>
                <polymorphic_bands>614 293 55 38</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>503 463 34</canonical_bands>
                <polymorphic_bands>537 463</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>503 387 76 34</canonical_bands>
                <polymorphic_bands>537 387 76</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGCAAGTTCAAAAGTTAAGTA</pcr_primer_p1>
		<pcr_primer_p2>TCAAATGTTTTTCGTTACAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGGCAAGTTCAAAAGTTAAGTACAGAAAAGTTGACAACTGCAAGAAATAGAGTTCTATATTCGGTTGACAGTTTCTGAAATTTTCAGAACAAACGGGCAAATTTAAAGTACTCTTTGAGACACTTAAGACTGACCATATTCAACTCAAGTTTTCTATTTTTGTGTGACGTTTCGGCTAGCACTGTATCAAATTCTATGTCTCATAGATTTTCAGTGATTTTTTGTAATCTTGTAACGAAAAACATTTGA</canonical_amplicon>
		<polymorphic_amplicon>TTGGCAAGTTCAAAAGTTAAGTACAGAAAAGTTGACAACTGCAAGAAATAGAGTTCTATATTCGGTTGAYAGTTTCTGAAATTTTCAGAACAAACGGGCAAATTTAAAGTACTCTTTGAGACACTTAAGACTGACCATATTCAACTCAAGTTTTCTATTTTTGTGTGACGTTTCGGCTAGCACTGTATCAAATTCTATGTCTCATAGATTTTCAGTGATTTTTTGTAATCTTGTAACGAAAAACATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31516</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>201404</contig_pos>
        <strand></strand>
        <context>aaaCGGGCAA[A/G]TTTAAAGTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTCTATATTCGGTTGACAGTTTCTGAAATTTTCAGAACAAACGGGCAA</left_flank>
        <right_flank>TTTAAAGTACTCTTTGAGACACTTAAGACTGACCATATTCAACTCAAGTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTACTTTTTCTTGACAAAAATATAATCTTCAGAAATTGTTGTGAACAAAAATTCCACGGAGCTTAAAAATGTTTTATCTTTTGAACGAAAAGCTGCTCGCAGAATAAATTTTTTGTACTTAGAGCTGCAGTGGTGGCCAGATTGTTGTTCAGAAATTCCCGCTTCAAGAGAAAACGCTCAATGTGGGATGACTAAAAAGTATTTATCACCTGTCAGCTTGTTCTGAAAGTTCCATGGACTATAGAACAAACAAAGAAACTTATTTTTGTAATTGACAACTTTTTTGCTGAAACACTTGCTGGAGAGACATTTAATGTCAAACATAAAAAATCTAGAAATTCTAAAAATTGTCAGGGAAACTGAGAAAAAAAACAATTGTTTTACGAAGCTTATCATTTTGGCAAGTTCAAAAGTTAAGTACAGAAAAGTTGACAACTGCAAGAAATAGAGTTCTATATTCGGTTGACAGTTTCTGAAATTTTCAGAACAAACGGGCAAATTTAAAGTACTCTTTGAGACACTTAAGACTGACCATATTCAACTCAAGTTTTCTATTTTTGTGTGACGTTTCGGCTAGCACTGTATCAAATTCTATGTCTCATAGATTTTCAGTGATTTTTTGTAATCTTGTAACGAAAAACATTTGATCTTAAATACAAATTTTCAAAATTGAAATCATCTGTAGTACCGGTCAATATGATCTGCAAAAACGTATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACAGAACTTAGTGAAATTTGCTTTTTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCCCGTTTTTGTACTGAAAGCGTTTCAATTTTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAGTTTTCGAAGAACTCAAAGTTTTGAGAGATTCCCAACAGTACCACCTGATCTTCTTATTTTTTAAAATTTATTTTATTATTTTTTAAATTCATGTTTTCTTCGATTTCTCAAATCTTAAAATCAC</canonical>
            <polymorphic>TGTACTTTTTCTTGACAAAAATATAATCTTCAGAAATTGTTGTGAACAAAAATTCCACGGAGCTTAAAAATGTTTTATCTTTTGAACGAAAAGCTGCTCGCAGAATAAATTTTTTGTACTTAGAGCTGCAGTGGTGGCCAGATTGTTGTTCAGAAATTCCCGCTTCAAGAGAAAACGCTCAATGTGGGATGACTAAAAAGTATTTATCACCTGTCAGCTTGTTCTGAAAGTTCCATGGACTATAGAACAAACAAAGAAACTTATTTTTGTAATTGACAACTTTTTTGCTGAAACACTTGCTGGAGAGACATTTAATGTCAAACATAAAAAATCTAGAAATTCTAAAAATTGTCAGGGAAACTGAGAAAAAAAACAATTGTTTTACGAAGCTTATCATTTTGGCAAGTTCAAAAGTTAAGTACAGAAAAGTTGACAACTGCAAGAAATAGAGTTCTATATTCGGTTGACAGTTTCTGAAATTTTCAGAACAAACGGGCAARTTTAAAGTACTCTTTGAGACACTTAAGACTGACCATATTCAACTCAAGTTTTCTATTTTTGTGTGACGTTTCGGCTAGCACTGTATCAAATTCTATGTCTCATAGATTTTCAGTGATTTTTTGTAATCTTGTAACGAAAAACATTTGATCTTAAATACAAATTTTCAAAATTGAAATCATCTGTAGTACCGGTCAATATGATCTGCAAAAACGTATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACAGAACTTAGTGAAATTTGCTTTTTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCCCGTTTTTGTACTGAAAGCGTTTCAATTTTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAGTTTTCGAAGAACTCAAAGTTTTGAGAGATTCCCAACAGTACCACCTGATCTTCTTATTTTTTAAAATTTATTTTATTATTTTTTAAATTCATGTTTTCTTCGATTTCTCAAATCTTAAAATCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>183 175 140 106 90 71 57 50 47 39 21 21</canonical_bands>
                <polymorphic_bands>183 175 140 111 106 71 57 50 47 39 21</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>116 106 103 97 90 71 69 67 57 47 39 34 28 21 21 16 9 9</canonical_bands>
                <polymorphic_bands>116 111 106 103 97 71 69 67 57 47 39 34 28 21 16 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGCAAGTTCAAAAGTTAAGTA</pcr_primer_p1>
		<pcr_primer_p2>TCAAATGTTTTTCGTTACAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGGCAAGTTCAAAAGTTAAGTACAGAAAAGTTGACAACTGCAAGAAATAGAGTTCTATATTCGGTTGACAGTTTCTGAAATTTTCAGAACAAACGGGCAAATTTAAAGTACTCTTTGAGACACTTAAGACTGACCATATTCAACTCAAGTTTTCTATTTTTGTGTGACGTTTCGGCTAGCACTGTATCAAATTCTATGTCTCATAGATTTTCAGTGATTTTTTGTAATCTTGTAACGAAAAACATTTGA</canonical_amplicon>
		<polymorphic_amplicon>TTGGCAAGTTCAAAAGTTAAGTACAGAAAAGTTGACAACTGCAAGAAATAGAGTTCTATATTCGGTTGACAGTTTCTGAAATTTTCAGAACAAACGGGCAARTTTAAAGTACTCTTTGAGACACTTAAGACTGACCATATTCAACTCAAGTTTTCTATTTTTGTGTGACGTTTCGGCTAGCACTGTATCAAATTCTATGTCTCATAGATTTTCAGTGATTTTTTGTAATCTTGTAACGAAAAACATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31517</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>201608</contig_pos>
        <strand></strand>
        <context>caatatgatc[T/A]gcaaaaacgt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATACAAATTTTCAAAATTGAAATCATCTGTAGTACCGGTCAATATGATC</left_flank>
        <right_flank>GCAAAAACGTATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACA</right_flank>
        <qual_score>50</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCACCTGTCAGCTTGTTCTGAAAGTTCCATGGACTATAGAACAAACAAAGAAACTTATTTTTGTAATTGACAACTTTTTTGCTGAAACACTTGCTGGAGAGACATTTAATGTCAAACATAAAAAATCTAGAAATTCTAAAAATTGTCAGGGAAACTGAGAAAAAAAACAATTGTTTTACGAAGCTTATCATTTTGGCAAGTTCAAAAGTTAAGTACAGAAAAGTTGACAACTGCAAGAAATAGAGTTCTATATTCGGTTGACAGTTTCTGAAATTTTCAGAACAAACGGGCAAATTTAAAGTACTCTTTGAGACACTTAAGACTGACCATATTCAACTCAAGTTTTCTATTTTTGTGTGACGTTTCGGCTAGCACTGTATCAAATTCTATGTCTCATAGATTTTCAGTGATTTTTTGTAATCTTGTAACGAAAAACATTTGATCTTAAATACAAATTTTCAAAATTGAAATCATCTGTAGTACCGGTCAATATGATCTGCAAAAACGTATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACAGAACTTAGTGAAATTTGCTTTTTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCCCGTTTTTGTACTGAAAGCGTTTCAATTTTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAGTTTTCGAAGAACTCAAAGTTTTGAGAGATTCCCAACAGTACCACCTGATCTTCTTATTTTTTAAAATTTATTTTATTATTTTTTAAATTCATGTTTTCTTCGATTTCTCAAATCTTAAAATCACAACATTTGAATATTTCAGGAAGTTTATTTTGGCAAAACAGTCAAGATCAAGATCTCCAAGGATCAACACACATGAGAAGACTGACGGAGAATTATTATTATTATTATCATCAAATTATTATTCAATTATTATTATTATTATTTTTATTATTATTACAAGTTCCGTCAAAACACGACGAAAGGATTGTTTTGCATTGAAGGCGAA</canonical>
            <polymorphic>TATCACCTGTCAGCTTGTTCTGAAAGTTCCATGGACTATAGAACAAACAAAGAAACTTATTTTTGTAATTGACAACTTTTTTGCTGAAACACTTGCTGGAGAGACATTTAATGTCAAACATAAAAAATCTAGAAATTCTAAAAATTGTCAGGGAAACTGAGAAAAAAAACAATTGTTTTACGAAGCTTATCATTTTGGCAAGTTCAAAAGTTAAGTACAGAAAAGTTGACAACTGCAAGAAATAGAGTTCTATATTCGGTTGACAGTTTCTGAAATTTTCAGAACAAACGGGCAAATTTAAAGTACTCTTTGAGACACTTAAGACTGACCATATTCAACTCAAGTTTTCTATTTTTGTGTGACGTTTCGGCTAGCACTGTATCAAATTCTATGTCTCATAGATTTTCAGTGATTTTTTGTAATCTTGTAACGAAAAACATTTGATCTTAAATACAAATTTTCAAAATTGAAATCATCTGTAGTACCGGTCAATATGATCWGCAAAAACGTATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACAGAACTTAGTGAAATTTGCTTTTTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCCCGTTTTTGTACTGAAAGCGTTTCAATTTTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAGTTTTCGAAGAACTCAAAGTTTTGAGAGATTCCCAACAGTACCACCTGATCTTCTTATTTTTTAAAATTTATTTTATTATTTTTTAAATTCATGTTTTCTTCGATTTCTCAAATCTTAAAATCACAACATTTGAATATTTCAGGAAGTTTATTTTGGCAAAACAGTCAAGATCAAGATCTCCAAGGATCAACACACATGAGAAGACTGACGGAGAATTATTATTATTATTATCATCAAATTATTATTCAATTATTATTATTATTATTTTTATTATTATTACAAGTTCCGTCAAAACACGACGAAAGGATTGTTTTGCATTGAAGGCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>445 266 235 41 13</canonical_bands>
                <polymorphic_bands>445 307 235 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTGTAACGAAAAACATTTGAT</pcr_primer_p1>
		<pcr_primer_p2>CTGTCCTAATGGGTTAATAACTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTGTAACGAAAAACATTTGATCTTAAATACAAATTTTCAAAATTGAAATCATCTGTAGTACCGGTCAATATGATCTGCAAAAACGTATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACAGAACTTAGTGAAATTTGCTTTTTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCCCGTTTTTGTACTGAAAGCGTTTCAATTTTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAG</canonical_amplicon>
		<polymorphic_amplicon>TCTTGTAACGAAAAACATTTGATCTTAAATACAAATTTTCAAAATTGAAATCATCTGTAGTACCGGTCAATATGATCWGCAAAAACGTATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACAGAACTTAGTGAAATTTGCTTTTTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCCCGTTTTTGTACTGAAAGCGTTTCAATTTTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31518</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>201665</contig_pos>
        <strand></strand>
        <context>cacagaactt[A/T]gtraaatttg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACGTATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACAGAACTT</left_flank>
        <right_flank>GTGAAATTTGCTTTTTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCC</right_flank>
        <qual_score>47</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTTTGTAATTGACAACTTTTTTGCTGAAACACTTGCTGGAGAGACATTTAATGTCAAACATAAAAAATCTAGAAATTCTAAAAATTGTCAGGGAAACTGAGAAAAAAAACAATTGTTTTACGAAGCTTATCATTTTGGCAAGTTCAAAAGTTAAGTACAGAAAAGTTGACAACTGCAAGAAATAGAGTTCTATATTCGGTTGACAGTTTCTGAAATTTTCAGAACAAACGGGCAAATTTAAAGTACTCTTTGAGACACTTAAGACTGACCATATTCAACTCAAGTTTTCTATTTTTGTGTGACGTTTCGGCTAGCACTGTATCAAATTCTATGTCTCATAGATTTTCAGTGATTTTTTGTAATCTTGTAACGAAAAACATTTGATCTTAAATACAAATTTTCAAAATTGAAATCATCTGTAGTACCGGTCAATATGATCTGCAAAAACGTATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACAGAACTTAGTGAAATTTGCTTTTTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCCCGTTTTTGTACTGAAAGCGTTTCAATTTTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAGTTTTCGAAGAACTCAAAGTTTTGAGAGATTCCCAACAGTACCACCTGATCTTCTTATTTTTTAAAATTTATTTTATTATTTTTTAAATTCATGTTTTCTTCGATTTCTCAAATCTTAAAATCACAACATTTGAATATTTCAGGAAGTTTATTTTGGCAAAACAGTCAAGATCAAGATCTCCAAGGATCAACACACATGAGAAGACTGACGGAGAATTATTATTATTATTATCATCAAATTATTATTCAATTATTATTATTATTATTTTTATTATTATTACAAGTTCCGTCAAAACACGACGAAAGGATTGTTTTGCATTGAAGGCGAAAAAGTTAATTGAGGGAGTCTACCCGCCCGATGAGATGAAAGTCATAAGTCCGGAACG</canonical>
            <polymorphic>TATTTTTGTAATTGACAACTTTTTTGCTGAAACACTTGCTGGAGAGACATTTAATGTCAAACATAAAAAATCTAGAAATTCTAAAAATTGTCAGGGAAACTGAGAAAAAAAACAATTGTTTTACGAAGCTTATCATTTTGGCAAGTTCAAAAGTTAAGTACAGAAAAGTTGACAACTGCAAGAAATAGAGTTCTATATTCGGTTGACAGTTTCTGAAATTTTCAGAACAAACGGGCAAATTTAAAGTACTCTTTGAGACACTTAAGACTGACCATATTCAACTCAAGTTTTCTATTTTTGTGTGACGTTTCGGCTAGCACTGTATCAAATTCTATGTCTCATAGATTTTCAGTGATTTTTTGTAATCTTGTAACGAAAAACATTTGATCTTAAATACAAATTTTCAAAATTGAAATCATCTGTAGTACCGGTCAATATGATCTGCAAAAACGTATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACAGAACTTWGTGAAATTTGCTTTTTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCCCGTTTTTGTACTGAAAGCGTTTCAATTTTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAGTTTTCGAAGAACTCAAAGTTTTGAGAGATTCCCAACAGTACCACCTGATCTTCTTATTTTTTAAAATTTATTTTATTATTTTTTAAATTCATGTTTTCTTCGATTTCTCAAATCTTAAAATCACAACATTTGAATATTTCAGGAAGTTTATTTTGGCAAAACAGTCAAGATCAAGATCTCCAAGGATCAACACACATGAGAAGACTGACGGAGAATTATTATTATTATTATCATCAAATTATTATTCAATTATTATTATTATTATTTTTATTATTATTACAAGTTCCGTCAAAACACGACGAAAGGATTGTTTTGCATTGAAGGCGAAAAAGTTAATTGAGGGAGTCTACCCGCCCGATGAGATGAAAGTCATAAGTCCGGAACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 397 100</canonical_bands>
                <polymorphic_bands>900 100</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTGTAACGAAAAACATTTGAT</pcr_primer_p1>
		<pcr_primer_p2>CTGTCCTAATGGGTTAATAACTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTGTAACGAAAAACATTTGATCTTAAATACAAATTTTCAAAATTGAAATCATCTGTAGTACCGGTCAATATGATCTGCAAAAACGTATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACAGAACTTAGTGAAATTTGCTTTTTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCCCGTTTTTGTACTGAAAGCGTTTCAATTTTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAG</canonical_amplicon>
		<polymorphic_amplicon>TCTTGTAACGAAAAACATTTGATCTTAAATACAAATTTTCAAAATTGAAATCATCTGTAGTACCGGTCAATATGATCTGCAAAAACGTATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACAGAACTTWGTGAAATTTGCTTTTTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCCCGTTTTTGTACTGAAAGCGTTTCAATTTTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31519</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>201668</contig_pos>
        <strand></strand>
        <context>agaacttwgt[G/A]aaatttgctt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACAGAACTTAGT</left_flank>
        <right_flank>AAATTTGCTTTTTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCCCGT</right_flank>
        <qual_score>47</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGTAATTGACAACTTTTTTGCTGAAACACTTGCTGGAGAGACATTTAATGTCAAACATAAAAAATCTAGAAATTCTAAAAATTGTCAGGGAAACTGAGAAAAAAAACAATTGTTTTACGAAGCTTATCATTTTGGCAAGTTCAAAAGTTAAGTACAGAAAAGTTGACAACTGCAAGAAATAGAGTTCTATATTCGGTTGACAGTTTCTGAAATTTTCAGAACAAACGGGCAAATTTAAAGTACTCTTTGAGACACTTAAGACTGACCATATTCAACTCAAGTTTTCTATTTTTGTGTGACGTTTCGGCTAGCACTGTATCAAATTCTATGTCTCATAGATTTTCAGTGATTTTTTGTAATCTTGTAACGAAAAACATTTGATCTTAAATACAAATTTTCAAAATTGAAATCATCTGTAGTACCGGTCAATATGATCTGCAAAAACGTATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACAGAACTTAGTGAAATTTGCTTTTTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCCCGTTTTTGTACTGAAAGCGTTTCAATTTTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAGTTTTCGAAGAACTCAAAGTTTTGAGAGATTCCCAACAGTACCACCTGATCTTCTTATTTTTTAAAATTTATTTTATTATTTTTTAAATTCATGTTTTCTTCGATTTCTCAAATCTTAAAATCACAACATTTGAATATTTCAGGAAGTTTATTTTGGCAAAACAGTCAAGATCAAGATCTCCAAGGATCAACACACATGAGAAGACTGACGGAGAATTATTATTATTATTATCATCAAATTATTATTCAATTATTATTATTATTATTTTTATTATTATTACAAGTTCCGTCAAAACACGACGAAAGGATTGTTTTGCATTGAAGGCGAAAAAGTTAATTGAGGGAGTCTACCCGCCCGATGAGATGAAAGTCATAAGTCCGGAACGCTG</canonical>
            <polymorphic>TTTTGTAATTGACAACTTTTTTGCTGAAACACTTGCTGGAGAGACATTTAATGTCAAACATAAAAAATCTAGAAATTCTAAAAATTGTCAGGGAAACTGAGAAAAAAAACAATTGTTTTACGAAGCTTATCATTTTGGCAAGTTCAAAAGTTAAGTACAGAAAAGTTGACAACTGCAAGAAATAGAGTTCTATATTCGGTTGACAGTTTCTGAAATTTTCAGAACAAACGGGCAAATTTAAAGTACTCTTTGAGACACTTAAGACTGACCATATTCAACTCAAGTTTTCTATTTTTGTGTGACGTTTCGGCTAGCACTGTATCAAATTCTATGTCTCATAGATTTTCAGTGATTTTTTGTAATCTTGTAACGAAAAACATTTGATCTTAAATACAAATTTTCAAAATTGAAATCATCTGTAGTACCGGTCAATATGATCTGCAAAAACGTATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACAGAACTTAGTRAAATTTGCTTTTTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCCCGTTTTTGTACTGAAAGCGTTTCAATTTTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAGTTTTCGAAGAACTCAAAGTTTTGAGAGATTCCCAACAGTACCACCTGATCTTCTTATTTTTTAAAATTTATTTTATTATTTTTTAAATTCATGTTTTCTTCGATTTCTCAAATCTTAAAATCACAACATTTGAATATTTCAGGAAGTTTATTTTGGCAAAACAGTCAAGATCAAGATCTCCAAGGATCAACACACATGAGAAGACTGACGGAGAATTATTATTATTATTATCATCAAATTATTATTCAATTATTATTATTATTATTTTTATTATTATTACAAGTTCCGTCAAAACACGACGAAAGGATTGTTTTGCATTGAAGGCGAAAAAGTTAATTGAGGGAGTCTACCCGCCCGATGAGATGAAAGTCATAAGTCCGGAACGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>226 137 112 102 92 80 69 43 42 35 31 15 12 2 2</canonical_bands>
                <polymorphic_bands>226 137 112 102 92 80 69 55 42 35 31 15 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTGTAACGAAAAACATTTGAT</pcr_primer_p1>
		<pcr_primer_p2>CTGTCCTAATGGGTTAATAACTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTGTAACGAAAAACATTTGATCTTAAATACAAATTTTCAAAATTGAAATCATCTGTAGTACCGGTCAATATGATCTGCAAAAACGTATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACAGAACTTAGTGAAATTTGCTTTTTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCCCGTTTTTGTACTGAAAGCGTTTCAATTTTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAG</canonical_amplicon>
		<polymorphic_amplicon>TCTTGTAACGAAAAACATTTGATCTTAAATACAAATTTTCAAAATTGAAATCATCTGTAGTACCGGTCAATATGATCTGCAAAAACGTATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACAGAACTTAGTRAAATTTGCTTTTTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCCCGTTTTTGTACTGAAAGCGTTTCAATTTTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31520</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>201679</contig_pos>
        <strand></strand>
        <context>aaatttgctt[T/C]tttttcagct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAGACCTAGATCGAAAGTTTTGCATCCACAGAACTTAGTGAAATTTGCTT</left_flank>
        <right_flank>TTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCCCGTTTTTGTACTGA</right_flank>
        <qual_score>50</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAACTTTTTTGCTGAAACACTTGCTGGAGAGACATTTAATGTCAAACATAAAAAATCTAGAAATTCTAAAAATTGTCAGGGAAACTGAGAAAAAAAACAATTGTTTTACGAAGCTTATCATTTTGGCAAGTTCAAAAGTTAAGTACAGAAAAGTTGACAACTGCAAGAAATAGAGTTCTATATTCGGTTGACAGTTTCTGAAATTTTCAGAACAAACGGGCAAATTTAAAGTACTCTTTGAGACACTTAAGACTGACCATATTCAACTCAAGTTTTCTATTTTTGTGTGACGTTTCGGCTAGCACTGTATCAAATTCTATGTCTCATAGATTTTCAGTGATTTTTTGTAATCTTGTAACGAAAAACATTTGATCTTAAATACAAATTTTCAAAATTGAAATCATCTGTAGTACCGGTCAATATGATCTGCAAAAACGTATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACAGAACTTAGTGAAATTTGCTTTTTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCCCGTTTTTGTACTGAAAGCGTTTCAATTTTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAGTTTTCGAAGAACTCAAAGTTTTGAGAGATTCCCAACAGTACCACCTGATCTTCTTATTTTTTAAAATTTATTTTATTATTTTTTAAATTCATGTTTTCTTCGATTTCTCAAATCTTAAAATCACAACATTTGAATATTTCAGGAAGTTTATTTTGGCAAAACAGTCAAGATCAAGATCTCCAAGGATCAACACACATGAGAAGACTGACGGAGAATTATTATTATTATTATCATCAAATTATTATTCAATTATTATTATTATTATTTTTATTATTATTACAAGTTCCGTCAAAACACGACGAAAGGATTGTTTTGCATTGAAGGCGAAAAAGTTAATTGAGGGAGTCTACCCGCCCGATGAGATGAAAGTCATAAGTCCGGAACGCTGCGGATTGTTCG</canonical>
            <polymorphic>ACAACTTTTTTGCTGAAACACTTGCTGGAGAGACATTTAATGTCAAACATAAAAAATCTAGAAATTCTAAAAATTGTCAGGGAAACTGAGAAAAAAAACAATTGTTTTACGAAGCTTATCATTTTGGCAAGTTCAAAAGTTAAGTACAGAAAAGTTGACAACTGCAAGAAATAGAGTTCTATATTCGGTTGACAGTTTCTGAAATTTTCAGAACAAACGGGCAAATTTAAAGTACTCTTTGAGACACTTAAGACTGACCATATTCAACTCAAGTTTTCTATTTTTGTGTGACGTTTCGGCTAGCACTGTATCAAATTCTATGTCTCATAGATTTTCAGTGATTTTTTGTAATCTTGTAACGAAAAACATTTGATCTTAAATACAAATTTTCAAAATTGAAATCATCTGTAGTACCGGTCAATATGATCTGCAAAAACGTATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACAGAACTTAGTGAAATTTGCTTYTTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCCCGTTTTTGTACTGAAAGCGTTTCAATTTTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAGTTTTCGAAGAACTCAAAGTTTTGAGAGATTCCCAACAGTACCACCTGATCTTCTTATTTTTTAAAATTTATTTTATTATTTTTTAAATTCATGTTTTCTTCGATTTCTCAAATCTTAAAATCACAACATTTGAATATTTCAGGAAGTTTATTTTGGCAAAACAGTCAAGATCAAGATCTCCAAGGATCAACACACATGAGAAGACTGACGGAGAATTATTATTATTATTATCATCAAATTATTATTCAATTATTATTATTATTATTTTTATTATTATTACAAGTTCCGTCAAAACACGACGAAAGGATTGTTTTGCATTGAAGGCGAAAAAGTTAATTGAGGGAGTCTACCCGCCCGATGAGATGAAAGTCATAAGTCCGGAACGCTGCGGATTGTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTGTAACGAAAAACATTTGAT</pcr_primer_p1>
		<pcr_primer_p2>CTGTCCTAATGGGTTAATAACTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTGTAACGAAAAACATTTGATCTTAAATACAAATTTTCAAAATTGAAATCATCTGTAGTACCGGTCAATATGATCTGCAAAAACGTATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACAGAACTTAGTGAAATTTGCTTTTTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCCCGTTTTTGTACTGAAAGCGTTTCAATTTTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAG</canonical_amplicon>
		<polymorphic_amplicon>TCTTGTAACGAAAAACATTTGATCTTAAATACAAATTTTCAAAATTGAAATCATCTGTAGTACCGGTCAATATGATCTGCAAAAACGTATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACAGAACTTAGTGAAATTTGCTTYTTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCCCGTTTTTGTACTGAAAGCGTTTCAATTTTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31521</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>201848</contig_pos>
        <strand></strand>
        <context>tttttaaaat[T/G]tattttatta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GTTTTGAGAGATTCCCAACAGTACCACCTGATCTTCTTATTTTTTAAAAT</left_flank>
        <right_flank>TATTTTATTATTTTTTAAATTCATGTTTTCTTCGATTTCTCAAATCTTAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAGAGTTCTATATTCGGTTGACAGTTTCTGAAATTTTCAGAACAAACGGGCAAATTTAAAGTACTCTTTGAGACACTTAAGACTGACCATATTCAACTCAAGTTTTCTATTTTTGTGTGACGTTTCGGCTAGCACTGTATCAAATTCTATGTCTCATAGATTTTCAGTGATTTTTTGTAATCTTGTAACGAAAAACATTTGATCTTAAATACAAATTTTCAAAATTGAAATCATCTGTAGTACCGGTCAATATGATCTGCAAAAACGTATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACAGAACTTAGTGAAATTTGCTTTTTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCCCGTTTTTGTACTGAAAGCGTTTCAATTTTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAGTTTTCGAAGAACTCAAAGTTTTGAGAGATTCCCAACAGTACCACCTGATCTTCTTATTTTTTAAAATTTATTTTATTATTTTTTAAATTCATGTTTTCTTCGATTTCTCAAATCTTAAAATCACAACATTTGAATATTTCAGGAAGTTTATTTTGGCAAAACAGTCAAGATCAAGATCTCCAAGGATCAACACACATGAGAAGACTGACGGAGAATTATTATTATTATTATCATCAAATTATTATTCAATTATTATTATTATTATTTTTATTATTATTACAAGTTCCGTCAAAACACGACGAAAGGATTGTTTTGCATTGAAGGCGAAAAAGTTAATTGAGGGAGTCTACCCGCCCGATGAGATGAAAGTCATAAGTCCGGAACGCTGCGGATTGTTCGCGATTTACTTTCCGGTTCCAGAGAACGTTGGAGTGTATTGACAAGCTTCATAGTCGACTGGAGAAATCATGTTGAAAGCTTTGGTCATCACGTTGATGTAGTCTGTAAAATTGACCAGTTGGCTTAACAGGTTTTTTGTTGTTTTTTGTGACTTACTGTTCTGTTGCAA</canonical>
            <polymorphic>AATAGAGTTCTATATTCGGTTGACAGTTTCTGAAATTTTCAGAACAAACGGGCAAATTTAAAGTACTCTTTGAGACACTTAAGACTGACCATATTCAACTCAAGTTTTCTATTTTTGTGTGACGTTTCGGCTAGCACTGTATCAAATTCTATGTCTCATAGATTTTCAGTGATTTTTTGTAATCTTGTAACGAAAAACATTTGATCTTAAATACAAATTTTCAAAATTGAAATCATCTGTAGTACCGGTCAATATGATCTGCAAAAACGTATTTGTAAAACAGACCTAGATCGAAAGTTTTGCATCCACAGAACTTAGTGAAATTTGCTTTTTTTTCAGCTGTTTGCCGATTTTTGAAAGACACTCCCGTTTTTGTACTGAAAGCGTTTCAATTTTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAGTTTTCGAAGAACTCAAAGTTTTGAGAGATTCCCAACAGTACCACCTGATCTTCTTATTTTTTAAAATKTATTTTATTATTTTTTAAATTCATGTTTTCTTCGATTTCTCAAATCTTAAAATCACAACATTTGAATATTTCAGGAAGTTTATTTTGGCAAAACAGTCAAGATCAAGATCTCCAAGGATCAACACACATGAGAAGACTGACGGAGAATTATTATTATTATTATCATCAAATTATTATTCAATTATTATTATTATTATTTTTATTATTATTACAAGTTCCGTCAAAACACGACGAAAGGATTGTTTTGCATTGAAGGCGAAAAAGTTAATTGAGGGAGTCTACCCGCCCGATGAGATGAAAGTCATAAGTCCGGAACGCTGCGGATTGTTCGCGATTTACTTTCCGGTTCCAGAGAACGTTGGAGTGTATTGACAAGCTTCATAGTCGACTGGAGAAATCATGTTGAAAGCTTTGGTCATCACGTTGATGTAGTCTGTAAAATTGACCAGTTGGCTTAACAGGTTTTTTGTTGTTTTTTGTGACTTACTGTTCTGTTGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>483 175 106 90 71 33 21 21</canonical_bands>
                <polymorphic_bands>483 196 106 90 71 33 21</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>173 128 106 97 90 87 71 69 61 33 23 21 21 11 9</canonical_bands>
                <polymorphic_bands>173 128 127 97 90 87 71 69 61 33 23 21 11 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAAAAAGTTGCCAGTTA</pcr_primer_p1>
		<pcr_primer_p2>CTTCTCATGTGTGTTGATCCT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAGTTTTCGAAGAACTCAAAGTTTTGAGAGATTCCCAACAGTACCACCTGATCTTCTTATTTTTTAAAATTTATTTTATTATTTTTTAAATTCATGTTTTCTTCGATTTCTCAAATCTTAAAATCACAACATTTGAATATTTCAGGAAGTTTATTTTGGCAAAACAGTCAAGATCAAGATCTCCAAGGATCAACACACATGAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAAAAAGTTGCCAGTTATTAACCCATTAGGACAGTTTTCGAAGAACTCAAAGTTTTGAGAGATTCCCAACAGTACCACCTGATCTTCTTATTTTTTAAAATKTATTTTATTATTTTTTAAATTCATGTTTTCTTCGATTTCTCAAATCTTAAAATCACAACATTTGAATATTTCAGGAAGTTTATTTTGGCAAAACAGTCAAGATCAAGATCTCCAAGGATCAACACACATGAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31522</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>278290</contig_pos>
        <strand></strand>
        <context>CGGCCCGGGT[G/C]GCACAGACAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CGCGGTCAAGTTCAGAAGAGAAAAAAAAATGGAATCTGGACGGCCCGGGT</left_flank>
        <right_flank>GCACAGACAAGGAGCAACACCCATGTTTCGCCCAAGGGATCTTCGCGTCA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCAAGAATGCAAACAAGAGGACCAAAAGCAATGCAAACAAGACATTTAATTCGCGCTTAAAAATTCATTTTGGACGGTCCCGACGGCAGAAGTTTCGACAGGCACGACATCAGGAAACAAAAGATGTATTTCGAGCAAAGAAGCTTTGAAGAAGGACGAGGTGTGATGGTTTGGGCTTGTTTTGGAAGCAAAGGCTGATGACAAAGCCGGGAATGTCGGCCGAGGCAGCTACCAACGAAGCGAAATCGAGGCCAGAAAAAAATAAATTCAATATAGACGGACCGGATGGAATCGACATCACCATGCTCACTTCAAGAGTGGGAAAAAAGATGAAGTATTTCTGGCGGTAATGGCCACGATCGTTGCCAAAACAGGGTGTGGAAGAACAAAGTTAATGCCAACAAAGTAACGCTCCACCAAAGCACAATCAAGGACCAAGGACCAATTCGCGGTCAAGTTCAGAAGAGAAAAAAAAATGGAATCTGGACGGCCCGGGTGGCACAGACAAGGAGCAACACCCATGTTTCGCCCAAGGGATCTTCGCGTCAAACGTGAAGAAAAAATATGTCTTCCTGAAGGAGGACGACCGAGGGGTCGTCATTTCAAACGATGTCTAGGATGAAGATAGAAAGACTGTGTCCACGGAAGCAAAATCATTAACCGATAACCAAGTTGCGGCAAGGTAGACGGAAAAATGCAATCTTGACGGACCACATGGAATCGACATCAACATGGTCATTTCCAGTGTAAAAGAATTGTTTCGCGAAGATCCTTGCCAAGACGGGTTGTAGAAAAACAAATTCTAGGTAAGAACAAATAGTGATTGAAAATATTTCTTGAAGACTTATAGACAGCCCTAATTCTGAATTATTCCACAAATTTTCAAAAATCGGATTTGGCACGGTGCCAGGAGCTCGCGTAAAAATTGCATACTTGTTACGTACCTTGTATATAGTGGATAGTTCGAGTTGGAAAACTTGCACTCTAAAACGGACAAT</canonical>
            <polymorphic>AAGCAAGAATGCAAACAAGAGGACCAAAAGCAATGCAAACAAGACATTTAATTCGCGCTTAAAAATTCATTTTGGACGGTCCCGACGGCAGAAGTTTCGACAGGCACGACATCAGGAAACAAAAGATGTATTTCGAGCAAAGAAGCTTTGAAGAAGGACGAGGTGTGATGGTTTGGGCTTGTTTTGGAAGCAAAGGCTGATGACAAAGCCGGGAATGTCGGCCGAGGCAGCTACCAACGAAGCGAAATCGAGGCCAGAAAAAAATAAATTCAATATAGACGGACCGGATGGAATCGACATCACCATGCTCACTTCAAGAGTGGGAAAAAAGATGAAGTATTTCTGGCGGTAATGGCCACGATCGTTGCCAAAACAGGGTGTGGAAGAACAAAGTTAATGCCAACAAAGTAACGCTCCACCAAAGCACAATCAAGGACCAAGGACCAATTCGCGGTCAAGTTCAGAAGAGAAAAAAAAATGGAATCTGGACGGCCCGGGTSGCACAGACAAGGAGCAACACCCATGTTTCGCCCAAGGGATCTTCGCGTCAAACGTGAAGAAAAAATATGTCTTCCTGAAGGAGGACGACCGAGGGGTCGTCATTTCAAACGATGTCTAGGATGAAGATAGAAAGACTGTGTCCACGGAAGCAAAATCATTAACCGATAACCAAGTTGCGGCAAGGTAGACGGAAAAATGCAATCTTGACGGACCACATGGAATCGACATCAACATGGTCATTTCCAGTGTAAAAGAATTGTTTCGCGAAGATCCTTGCCAAGACGGGTTGTAGAAAAACAAATTCTAGGTAAGAACAAATAGTGATTGAAAATATTTCTTGAAGACTTATAGACAGCCCTAATTCTGAATTATTCCACAAATTTTCAAAAATCGGATTTGGCACGGTGCCAGGAGCTCGCGTAAAAATTGCATACTTGTTACGTACCTTGTATATAGTGGATAGTTCGAGTTGGAAAACTTGCACTCTAAAACGGACAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCCNNNNNGGC</site>
                <isoschizomers>
                    <enzyme>BglI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>135 106 84 75 74 71 59 53 51 37 36 36 34 26 25 22 16 16 11 9 8 5 4 3 2 2</canonical_bands>
                <polymorphic_bands>135 106 84 77 75 71 59 53 51 37 36 36 34 26 25 22 16 16 11 9 8 5 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGTTAATGCCAACAAAGTAAC</pcr_primer_p1>
		<pcr_primer_p2>CACAGTCTTTCTATCTTCATCCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAGTTAATGCCAACAAAGTAACGCTCCACCAAAGCACAATCAAGGACCAAGGACCAATTCGCGGTCAAGTTCAGAAGAGAAAAAAAAATGGAATCTGGACGGCCCGGGTGGCACAGACAAGGAGCAACACCCATGTTTCGCCCAAGGGATCTTCGCGTCAAACGTGAAGAAAAAATATGTCTTCCTGAAGGAGGACGACCGAGGGGTCGTCATTTCAAACGATGTCTAGGATGAAGATAGAAAGACTGTG</canonical_amplicon>
		<polymorphic_amplicon>AAAGTTAATGCCAACAAAGTAACGCTCCACCAAAGCACAATCAAGGACCAAGGACCAATTCGCGGTCAAGTTCAGAAGAGAAAAAAAAATGGAATCTGGACGGCCCGGGTSGCACAGACAAGGAGCAACACCCATGTTTCGCCCAAGGGATCTTCGCGTCAAACGTGAAGAAAAAATATGTCTTCCTGAAGGAGGACGACCGAGGGGTCGTCATTTCAAACGATGTCTAGGATGAAGATAGAAAGACTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31523</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>300056</contig_pos>
        <strand>+</strand>
        <context>AAAATGTTCT[C/G]ATCACATCCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTGTTTGGTTTATCAAGAAATTGACGTTTTTCATTTCAAAAAATGTTCT</left_flank>
        <right_flank>ATCACATCCTCGAACTGGTTCTGTTTCTTTGATTCGGGTTGTCGCGTGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTGGATGAGCATTTTGTGTGATTTAAAGGAATACACTTTTTGATCTGTCAAAAGAACTTTCTCCTGTTCTACATGGACTTCTTCGGTCTAGTGATTCTCAAGCATTTCGAGCAGAAACGAACGTTCCATCAATACTTAGCAAGCTGAAAAAAACTGTAATGTCGATAATTATATTATTCGTACTCACGCTATCGCCGTGGACATTCTCTTTCTTTTCAATGTAGAGAATCACATCGGGGTGCGTGTCAAGGCTCAAACAGTACTTCTCCCTCGAAAGTGTTCATTTCATTGGGCAATACCGAAATTTCTTTTTTTTATAAACGCCTTCAGTGTAGTGTATCTCTTTTTGTCCAGTCAGTTTGAAATCTGTAAACATTCAATTTCATTATGTGAAAATATTCCAATACTTACTCTGTTCCAAGAGCCTCCCGATTCCAATTCCAAAGCTTTGTTTGGTTTATCAAGAAATTGACGTTTTTCATTTCAAAAAATGTTCTCATCACATCCTCGAACTGGTTCTGTTTCTTTGATTCGGGTTGTCGCGTGAACACTTTACCATCCACAATCTCATGTTCTTTTTGACAGGTTTTCAAAAAATTCTCTTAGCTGAAAATGATTGATGTTCCTACGAAATTTAACAAAAAACTCTTTCTCGATAACTCAGCCATCCAGTCTTTTCTCTTAGTTCCGGTTTTCCATAATCACAAAAAAACGGGTTTTGTTGGAAGTATTCCAACAAGATTGGTCTCGCTTCTTCTTCAGATAATACACGTGGGATTCCCGCAGGGATCGGTTTTCTCTGTCTTTGTGTCGAGAAATATTGTCCAACCTAAATATGATAGTGGGTGATTTTGAAAACTTCAACGTGTTTCTGAAATATTCATTTATAAACGTTCATCTGTTTTCAAAAAAAGCATTACCTTCACCAGGCTTGGTCGGAATCGGAAAATCGAGTTCTCGATTTTTCCGATTTTCCGAATTTTTTTTCGGAAAATTTT</canonical>
            <polymorphic>GATTGGATGAGCATTTTGTGTGATTTAAAGGAATACACTTTTTGATCTGTCAAAAGAACTTTCTCCTGTTCTACATGGACTTCTTCGGTCTAGTGATTCTCAAGCATTTCGAGCAGAAACGAACGTTCCATCAATACTTAGCAAGCTGAAAAAAACTGTAATGTCGATAATTATATTATTCGTACTCACGCTATCGCCGTGGACATTCTCTTTCTTTTCAATGTAGAGAATCACATCGGGGTGCGTGTCAAGGCTCAAACAGTACTTCTCCCTCGAAAGTGTTCATTTCATTGGGCAATACCGAAATTTCTTTTTTTTATAAACGCCTTCAGTGTAGTGTATCTCTTTTTGTCCAGTCAGTTTGAAATCTGTAAACATTCAATTTCATTATGTGAAAATATTCCAATACTTACTCTGTTCCAAGAGCCTCCCGATTCCAATTCCAAAGCTTTGTTTGGTTTATCAAGAAATTGACGTTTTTCATTTCAAAAAATGTTCTSATCACATCCTCGAACTGGTTCTGTTTCTTTGATTCGGGTTGTCGCGTGAACACTTTACCATCCACAATCTCATGTTCTTTTTGACAGGTTTTCAAAAAATTCTCTTAGCTGAAAATGATTGATGTTCCTACGAAATTTAACAAAAAACTCTTTCTCGATAACTCAGCCATCCAGTCTTTTCTCTTAGTTCCGGTTTTCCATAATCACAAAAAAACGGGTTTTGTTGGAAGTATTCCAACAAGATTGGTCTCGCTTCTTCTTCAGATAATACACGTGGGATTCCCGCAGGGATCGGTTTTCTCTGTCTTTGTGTCGAGAAATATTGTCCAACCTAAATATGATAGTGGGTGATTTTGAAAACTTCAACGTGTTTCTGAAATATTCATTTATAAACGTTCATCTGTTTTCAAAAAAAGCATTACCTTCACCAGGCTTGGTCGGAATCGGAAAATCGAGTTCTCGATTTTTCCGATTTTCCGAATTTTTTTTCGGAAAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTATCTCTTTTTGTCCAGTCA</pcr_primer_p1>
		<pcr_primer_p2>TGTCAAAAAGAACATGAGATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGTATCTCTTTTTGTCCAGTCAGTTTGAAATCTGTAAACATTCAATTTCATTATGTGAAAATATTCCAATACTTACTCTGTTCCAAGAGCCTCCCGATTCCAATTCCAAAGCTTTGTTTGGTTTATCAAGAAATTGACGTTTTTCATTTCAAAAAATGTTCTCATCACATCCTCGAACTGGTTCTGTTTCTTTGATTCGGGTTGTCGCGTGAACACTTTACCATCCACAATCTCATGTTCTTTTTGACA</canonical_amplicon>
		<polymorphic_amplicon>GTGTATCTCTTTTTGTCCAGTCAGTTTGAAATCTGTAAACATTCAATTTCATTATGTGAAAATATTCCAATACTTACTCTGTTCCAAGAGCCTCCCGATTCCAATTCCAAAGCTTTGTTTGGTTTATCAAGAAATTGACGTTTTTCATTTCAAAAAATGTTCTSATCACATCCTCGAACTGGTTCTGTTTCTTTGATTCGGGTTGTCGCGTGAACACTTTACCATCCACAATCTCATGTTCTTTTTGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31524</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>310924</contig_pos>
        <strand></strand>
        <context>atagagtggg[G/A]tcatacttaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTGAATTTTTGGGGGCCTTTAATGGAAGAAAACACAGGAATAGAGTGGG</left_flank>
        <right_flank>TCATACTTAAAGAATACCAGATTGTTCAAATATAGGACCTCCACAATATT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATGAAACAGAAAGGAATTATGTAAACCAATTTTTATTCATCATATTCTTCGATACTGTCGCATAGAGCTGAGACTCTCTCTATAATCGCATAGAGCTGAGACTCTCTCTATAAAAGAAATGAGAAACGATATTTATTTCTCACACTTCTCGTTCGTTCAACATTATTGCATGGAAGACAAATAAAAAAAGAATTCAGTGAACCTCATGAATTATTTCTATCCCATTTTTTTTCTAAAATCATTCAGTTTTGTTCATTGTTCTTCTAATTTTGTCTCTTCCAAACTGCATCACTAAATATTTCAATTTTTGTGTATTCTTTCTCGACTCCCCGATAAAAATTGTTCCGTTGCAGTTTTTTATTTTCACAATTAGTAACCAATAGATGTTGCCTGTAGGGACGTTTACACAAACAAGAAGTGAGAATCAGAACCATGTTGGGGTCTAAAATTGAATTTTTGGGGGCCTTTAATGGAAGAAAACACAGGAATAGAGTGGGGTCATACTTAAAGAATACCAGATTGTTCAAATATAGGACCTCCACAATATTCTGGTAGGGAGCTACATATATTTTAATTATCAGAAAGCAATTTAAGATCATTGTTTGGAAATGTGGAAATATTTGAGTCCAACTTAGTTAGGCTGACTTTGAACCACTTCCATTTTGATATCACACTGAGTATGGGATGAATTGGATTGATAAGCTAAGGAAACGTCGAGTTGTAGTTAATGCGGGAGTGGAATGGTGACGAGTCTGGAAAACCGAAAAATCAGTGTATATAGCTAAGCTTCACTTTCTTGTGTAGCTATCGAACCCCTATTCATCGGCCCATACTCCCGGGGTACATCAGAATGGGGTACATCGGGGGTACATCGTGCTCATGGGGTACAAAGTCTCAGGGGGTACATAGTCTCATGGGGTACATTTTAGGTATAATCTCATGGGGTACATTTTTCGCTTTCTCATGGGGTACATCTCTGAAATACTCAGGGGGTACAT</canonical>
            <polymorphic>TGATGAAACAGAAAGGAATTATGTAAACCAATTTTTATTCATCATATTCTTCGATACTGTCGCATAGAGCTGAGACTCTCTCTATAATCGCATAGAGCTGAGACTCTCTCTATAAAAGAAATGAGAAACGATATTTATTTCTCACACTTCTCGTTCGTTCAACATTATTGCATGGAAGACAAATAAAAAAAGAATTCAGTGAACCTCATGAATTATTTCTATCCCATTTTTTTTCTAAAATCATTCAGTTTTGTTCATTGTTCTTCTAATTTTGTCTCTTCCAAACTGCATCACTAAATATTTCAATTTTTGTGTATTCTTTCTCGACTCCCCGATAAAAATTGTTCCGTTGCAGTTTTTTATTTTCACAATTAGTAACCAATAGATGTTGCCTGTAGGGACGTTTACACAAACAAGAAGTGAGAATCAGAACCATGTTGGGGTCTAAAATTGAATTTTTGGGGGCCTTTAATGGAAGAAAACACAGGAATAGAGTGGGRTCATACTTAAAGAATACCAGATTGTTCAAATATAGGACCTCCACAATATTCTGGTAGGGAGCTACATATATTTTAATTATCAGAAAGCAATTTAAGATCATTGTTTGGAAATGTGGAAATATTTGAGTCCAACTTAGTTAGGCTGACTTTGAACCACTTCCATTTTGATATCACACTGAGTATGGGATGAATTGGATTGATAAGCTAAGGAAACGTCGAGTTGTAGTTAATGCGGGAGTGGAATGGTGACGAGTCTGGAAAACCGAAAAATCAGTGTATATAGCTAAGCTTCACTTTCTTGTGTAGCTATCGAACCCCTATTCATCGGCCCATACTCCCGGGGTACATCAGAATGGGGTACATCGGGGGTACATCGTGCTCATGGGGTACAAAGTCTCAGGGGGTACATAGTCTCATGGGGTACATTTTAGGTATAATCTCATGGGGTACATTTTTCGCTTTCTCATGGGGTACATCTCTGAAATACTCAGGGGGTACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAACCAATAGATGTTGCCTGTA</pcr_primer_p1>
		<pcr_primer_p2>AAATATTTCCACATTTCCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAACCAATAGATGTTGCCTGTAGGGACGTTTACACAAACAAGAAGTGAGAATCAGAACCATGTTGGGGTCTAAAATTGAATTTTTGGGGGCCTTTAATGGAAGAAAACACAGGAATAGAGTGGGGTCATACTTAAAGAATACCAGATTGTTCAAATATAGGACCTCCACAATATTCTGGTAGGGAGCTACATATATTTTAATTATCAGAAAGCAATTTAAGATCATTGTTTGGAAATGTGGAAATATTT</canonical_amplicon>
		<polymorphic_amplicon>GTAACCAATAGATGTTGCCTGTAGGGACGTTTACACAAACAAGAAGTGAGAATCAGAACCATGTTGGGGTCTAAAATTGAATTTTTGGGGGCCTTTAATGGAAGAAAACACAGGAATAGAGTGGGRTCATACTTAAAGAATACCAGATTGTTCAAATATAGGACCTCCACAATATTCTGGTAGGGAGCTACATATATTTTAATTATCAGAAAGCAATTTAAGATCATTGTTTGGAAATGTGGAAATATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31525</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>310980</contig_pos>
        <strand></strand>
        <context>atattctggt[A/G]gggagctaca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTAAAGAATACCAGATTGTTCAAATATAGGACCTCCACAATATTCTGGT</left_flank>
        <right_flank>GGGAGCTACATATATTTTAATTATCAGAAAGCAATTTAAGATCATTGTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTCGCATAGAGCTGAGACTCTCTCTATAATCGCATAGAGCTGAGACTCTCTCTATAAAAGAAATGAGAAACGATATTTATTTCTCACACTTCTCGTTCGTTCAACATTATTGCATGGAAGACAAATAAAAAAAGAATTCAGTGAACCTCATGAATTATTTCTATCCCATTTTTTTTCTAAAATCATTCAGTTTTGTTCATTGTTCTTCTAATTTTGTCTCTTCCAAACTGCATCACTAAATATTTCAATTTTTGTGTATTCTTTCTCGACTCCCCGATAAAAATTGTTCCGTTGCAGTTTTTTATTTTCACAATTAGTAACCAATAGATGTTGCCTGTAGGGACGTTTACACAAACAAGAAGTGAGAATCAGAACCATGTTGGGGTCTAAAATTGAATTTTTGGGGGCCTTTAATGGAAGAAAACACAGGAATAGAGTGGGGTCATACTTAAAGAATACCAGATTGTTCAAATATAGGACCTCCACAATATTCTGGTAGGGAGCTACATATATTTTAATTATCAGAAAGCAATTTAAGATCATTGTTTGGAAATGTGGAAATATTTGAGTCCAACTTAGTTAGGCTGACTTTGAACCACTTCCATTTTGATATCACACTGAGTATGGGATGAATTGGATTGATAAGCTAAGGAAACGTCGAGTTGTAGTTAATGCGGGAGTGGAATGGTGACGAGTCTGGAAAACCGAAAAATCAGTGTATATAGCTAAGCTTCACTTTCTTGTGTAGCTATCGAACCCCTATTCATCGGCCCATACTCCCGGGGTACATCAGAATGGGGTACATCGGGGGTACATCGTGCTCATGGGGTACAAAGTCTCAGGGGGTACATAGTCTCATGGGGTACATTTTAGGTATAATCTCATGGGGTACATTTTTCGCTTTCTCATGGGGTACATCTCTGAAATACTCAGGGGGTACATCGCATTGTCTCAGAGGGTACATCGCATTGAATCTCATGTGGTAAACATCAAGTCGG</canonical>
            <polymorphic>CTGTCGCATAGAGCTGAGACTCTCTCTATAATCGCATAGAGCTGAGACTCTCTCTATAAAAGAAATGAGAAACGATATTTATTTCTCACACTTCTCGTTCGTTCAACATTATTGCATGGAAGACAAATAAAAAAAGAATTCAGTGAACCTCATGAATTATTTCTATCCCATTTTTTTTCTAAAATCATTCAGTTTTGTTCATTGTTCTTCTAATTTTGTCTCTTCCAAACTGCATCACTAAATATTTCAATTTTTGTGTATTCTTTCTCGACTCCCCGATAAAAATTGTTCCGTTGCAGTTTTTTATTTTCACAATTAGTAACCAATAGATGTTGCCTGTAGGGACGTTTACACAAACAAGAAGTGAGAATCAGAACCATGTTGGGGTCTAAAATTGAATTTTTGGGGGCCTTTAATGGAAGAAAACACAGGAATAGAGTGGGGTCATACTTAAAGAATACCAGATTGTTCAAATATAGGACCTCCACAATATTCTGGTRGGGAGCTACATATATTTTAATTATCAGAAAGCAATTTAAGATCATTGTTTGGAAATGTGGAAATATTTGAGTCCAACTTAGTTAGGCTGACTTTGAACCACTTCCATTTTGATATCACACTGAGTATGGGATGAATTGGATTGATAAGCTAAGGAAACGTCGAGTTGTAGTTAATGCGGGAGTGGAATGGTGACGAGTCTGGAAAACCGAAAAATCAGTGTATATAGCTAAGCTTCACTTTCTTGTGTAGCTATCGAACCCCTATTCATCGGCCCATACTCCCGGGGTACATCAGAATGGGGTACATCGGGGGTACATCGTGCTCATGGGGTACAAAGTCTCAGGGGGTACATAGTCTCATGGGGTACATTTTAGGTATAATCTCATGGGGTACATTTTTCGCTTTCTCATGGGGTACATCTCTGAAATACTCAGGGGGTACATCGCATTGTCTCAGAGGGTACATCGCATTGAATCTCATGTGGTAAACATCAAGTCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAACCAATAGATGTTGCCTGTA</pcr_primer_p1>
		<pcr_primer_p2>AAATATTTCCACATTTCCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAACCAATAGATGTTGCCTGTAGGGACGTTTACACAAACAAGAAGTGAGAATCAGAACCATGTTGGGGTCTAAAATTGAATTTTTGGGGGCCTTTAATGGAAGAAAACACAGGAATAGAGTGGGGTCATACTTAAAGAATACCAGATTGTTCAAATATAGGACCTCCACAATATTCTGGTAGGGAGCTACATATATTTTAATTATCAGAAAGCAATTTAAGATCATTGTTTGGAAATGTGGAAATATTT</canonical_amplicon>
		<polymorphic_amplicon>GTAACCAATAGATGTTGCCTGTAGGGACGTTTACACAAACAAGAAGTGAGAATCAGAACCATGTTGGGGTCTAAAATTGAATTTTTGGGGGCCTTTAATGGAAGAAAACACAGGAATAGAGTGGGGTCATACTTAAAGAATACCAGATTGTTCAAATATAGGACCTCCACAATATTCTGGTRGGGAGCTACATATATTTTAATTATCAGAAAGCAATTTAAGATCATTGTTTGGAAATGTGGAAATATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31526</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>311212</contig_pos>
        <strand>+</strand>
        <context>ATATAGCTAA[A/G]CTTCACTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGGAATGGTGACGAGTCTGGAAAACCGAAAAATCAGTGTATATAGCTAA</left_flank>
        <right_flank>CTTCACTTTCTTGTGTAGCTATCGAACCCCTATTCATCGGCCCATACTCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCACTAAATATTTCAATTTTTGTGTATTCTTTCTCGACTCCCCGATAAAAATTGTTCCGTTGCAGTTTTTTATTTTCACAATTAGTAACCAATAGATGTTGCCTGTAGGGACGTTTACACAAACAAGAAGTGAGAATCAGAACCATGTTGGGGTCTAAAATTGAATTTTTGGGGGCCTTTAATGGAAGAAAACACAGGAATAGAGTGGGGTCATACTTAAAGAATACCAGATTGTTCAAATATAGGACCTCCACAATATTCTGGTAGGGAGCTACATATATTTTAATTATCAGAAAGCAATTTAAGATCATTGTTTGGAAATGTGGAAATATTTGAGTCCAACTTAGTTAGGCTGACTTTGAACCACTTCCATTTTGATATCACACTGAGTATGGGATGAATTGGATTGATAAGCTAAGGAAACGTCGAGTTGTAGTTAATGCGGGAGTGGAATGGTGACGAGTCTGGAAAACCGAAAAATCAGTGTATATAGCTAAGCTTCACTTTCTTGTGTAGCTATCGAACCCCTATTCATCGGCCCATACTCCCGGGGTACATCAGAATGGGGTACATCGGGGGTACATCGTGCTCATGGGGTACAAAGTCTCAGGGGGTACATAGTCTCATGGGGTACATTTTAGGTATAATCTCATGGGGTACATTTTTCGCTTTCTCATGGGGTACATCTCTGAAATACTCAGGGGGTACATCGCATTGTCTCAGAGGGTACATCGCATTGAATCTCATGTGGTAAACATCAAGTCGGATTCTACAGTTTCAGCGCTCATAGCTGCCTGATTTTTCCAACATTCGTTACATATTATGAGTGGTTTTTTTTGTTTTCCATGTAGTTATTCAAGAATGTAATTTCGCTTTTGATGTGGTTTGGAACAGAGATAACTGTCCAACATTATTTCTTTTCATTCATAATTCAGAAACATTTGGCTGATTGAAGAAAAATTGCCTATTGCAAGATATTCGGAGATTTCAGCAAATTC</canonical>
            <polymorphic>CATCACTAAATATTTCAATTTTTGTGTATTCTTTCTCGACTCCCCGATAAAAATTGTTCCGTTGCAGTTTTTTATTTTCACAATTAGTAACCAATAGATGTTGCCTGTAGGGACGTTTACACAAACAAGAAGTGAGAATCAGAACCATGTTGGGGTCTAAAATTGAATTTTTGGGGGCCTTTAATGGAAGAAAACACAGGAATAGAGTGGGGTCATACTTAAAGAATACCAGATTGTTCAAATATAGGACCTCCACAATATTCTGGTAGGGAGCTACATATATTTTAATTATCAGAAAGCAATTTAAGATCATTGTTTGGAAATGTGGAAATATTTGAGTCCAACTTAGTTAGGCTGACTTTGAACCACTTCCATTTTGATATCACACTGAGTATGGGATGAATTGGATTGATAAGCTAAGGAAACGTCGAGTTGTAGTTAATGCGGGAGTGGAATGGTGACGAGTCTGGAAAACCGAAAAATCAGTGTATATAGCTAARCTTCACTTTCTTGTGTAGCTATCGAACCCCTATTCATCGGCCCATACTCCCGGGGTACATCAGAATGGGGTACATCGGGGGTACATCGTGCTCATGGGGTACAAAGTCTCAGGGGGTACATAGTCTCATGGGGTACATTTTAGGTATAATCTCATGGGGTACATTTTTCGCTTTCTCATGGGGTACATCTCTGAAATACTCAGGGGGTACATCGCATTGTCTCAGAGGGTACATCGCATTGAATCTCATGTGGTAAACATCAAGTCGGATTCTACAGTTTCAGCGCTCATAGCTGCCTGATTTTTCCAACATTCGTTACATATTATGAGTGGTTTTTTTTGTTTTCCATGTAGTTATTCAAGAATGTAATTTCGCTTTTGATGTGGTTTGGAACAGAGATAACTGTCCAACATTATTTCTTTTCATTCATAATTCAGAAACATTTGGCTGATTGAAGAAAAATTGCCTATTGCAAGATATTCGGAGATTTCAGCAAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>274 273 208 143 79 18 5</canonical_bands>
                <polymorphic_bands>274 273 208 143 79 23</polymorphic_bands>
            </assay>
            <assay>
                <site>GCTNAGC</site>
                <isoschizomers>
                    <enzyme>BlpI</enzyme>
                    <enzyme>Bpu1102I</enzyme>
                    <enzyme>Bsp1720I</enzyme>
                    <enzyme>CelII</enzyme>
                    <enzyme>EspI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>345 279 112 91 79 43 29 22</canonical_bands>
                <polymorphic_bands>345 279 191 91 43 29 22</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>252 177 155 96 81 79 62 53 22 18 5</canonical_bands>
                <polymorphic_bands>252 177 155 96 81 79 62 53 23 22</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTGTAGTTAATGCGGGAGT</pcr_primer_p1>
		<pcr_primer_p2>CCCCAAATTTTTGAACCTAC</pcr_primer_p2>
		<pcr_amplicon_size>931</pcr_amplicon_size>
		<canonical_amplicon>AGTTGTAGTTAATGCGGGAGTGGAATGGTGACGAGTCTGGAAAACCGAAAAATCAGTGTATATAGCTAAGCTTCACTTTCTTGTGTAGC</canonical_amplicon>
		<polymorphic_amplicon>AGTTGTAGTTAATGCGGGAGTGGAATGGTGACGAGTCTGGAAAACCGAAAAATCAGTGTATATAGCTAARCTTCACTTTCTTGTGTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31527</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>414917</contig_pos>
        <strand>+</strand>
        <context>TGGATACGTC[A/G]AAAAARWAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTC</left_flank>
        <right_flank>AAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCTCGATTTTTTTTGCCCCTGGGAAAGTCTGCAAATCCCAAAAGTCCCCAAAAAATTTGAAAATAGAAGCTATACCGTTTTTTTTCCGTCCGTGCCAATGACTCATATTTCAGCGTTTCAAAATATTCGTAATTTCTCCTCCCATCATGTGACTAATAACAAAAATATTGGGACAATACATGTACAACTACTACTAGCTTCTAGAACAATAGAATCTTTAGTCATTTTTTCTGTCTCTCCCGGTGCCCAAGCACCGTTTTCTTCTTGCAGTTCTGTACGATTCATTCCCTCATTAACTGAAACGCTAAGCCAGGTAATCCATGAGGGCCCCCTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCG</canonical>
            <polymorphic>TCTCTCGATTTTTTTTGCCCCTGGGAAAGTCTGCAAATCCCAAAAGTCCCCAAAAAATTTGAAAATAGAAGCTATACCGTTTTTTTTCCGTCCGTGCCAATGACTCATATTTCAGCGTTTCAAAATATTCGTAATTTCTCCTCCCATCATGTGACTAATAACAAAAATATTGGGACAATACATGTACAACTACTACTAGCTTCTAGAACAATAGAATCTTTAGTCATTTTTTCTGTCTCTCCCGGTGCCCAAGCACCGTTTTCTTCTTGCAGTTCTGTACGATTCATTCCCTCATTAACTGAAACGCTAAGCCAGGTAATCCATGAGGGCCCCCTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCRAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAATGTCCCCTCTTCTTCTAAC</pcr_primer_p1>
		<pcr_primer_p2>GACCTGTGACTGACTTCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTC</canonical_amplicon>
		<polymorphic_amplicon>CTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCRAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31528</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>414923</contig_pos>
        <strand>+</strand>
        <context>CGTCRAAAAA[A/G]WAGACCCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAA</left_flank>
        <right_flank>AAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTTTTTTGCCCCTGGGAAAGTCTGCAAATCCCAAAAGTCCCCAAAAAATTTGAAAATAGAAGCTATACCGTTTTTTTTCCGTCCGTGCCAATGACTCATATTTCAGCGTTTCAAAATATTCGTAATTTCTCCTCCCATCATGTGACTAATAACAAAAATATTGGGACAATACATGTACAACTACTACTAGCTTCTAGAACAATAGAATCTTTAGTCATTTTTTCTGTCTCTCCCGGTGCCCAAGCACCGTTTTCTTCTTGCAGTTCTGTACGATTCATTCCCTCATTAACTGAAACGCTAAGCCAGGTAATCCATGAGGGCCCCCTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACA</canonical>
            <polymorphic>GATTTTTTTTGCCCCTGGGAAAGTCTGCAAATCCCAAAAGTCCCCAAAAAATTTGAAAATAGAAGCTATACCGTTTTTTTTCCGTCCGTGCCAATGACTCATATTTCAGCGTTTCAAAATATTCGTAATTTCTCCTCCCATCATGTGACTAATAACAAAAATATTGGGACAATACATGTACAACTACTACTAGCTTCTAGAACAATAGAATCTTTAGTCATTTTTTCTGTCTCTCCCGGTGCCCAAGCACCGTTTTCTTCTTGCAGTTCTGTACGATTCATTCCCTCATTAACTGAAACGCTAAGCCAGGTAATCCATGAGGGCCCCCTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAARAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAATGTCCCCTCTTCTTCTAAC</pcr_primer_p1>
		<pcr_primer_p2>GACCTGTGACTGACTTCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTC</canonical_amplicon>
		<polymorphic_amplicon>CTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAARAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31529</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>415239</contig_pos>
        <strand>+</strand>
        <context>CATTTCCTGT[A/C]YKTCWTTGTM</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGT</left_flank>
        <right_flank>TTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAGGGCCCCCTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACAGTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAATTTCACATTTTGATTAATTGGAAAAAGAGTGATTATGGTGATCTGTGATATTTGCGATACAGTATGACCAGTACCGGTAAATGAGATATACAGCACTCTTTTTTTAGAAATTTTCCCCATTCTGGAGCTCGGCAGCCAAGTTTACGATCATTTTGAAATTTGTGGAGAATGTAAAACAGATAAAGATTGAAGACCTTACATTATCAGAATTTTTCAAAAGTTCCTAGTTTTTAAGCTTCTTACCCATTTCTGAAAAAAACCCTTTTT</canonical>
            <polymorphic>ATGAGGGCCCCCTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTMTTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACAGTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAATTTCACATTTTGATTAATTGGAAAAAGAGTGATTATGGTGATCTGTGATATTTGCGATACAGTATGACCAGTACCGGTAAATGAGATATACAGCACTCTTTTTTTAGAAATTTTCCCCATTCTGGAGCTCGGCAGCCAAGTTTACGATCATTTTGAAATTTGTGGAGAATGTAAAACAGATAAAGATTGAAGACCTTACATTATCAGAATTTTTCAAAAGTTCCTAGTTTTTAAGCTTCTTACCCATTTCTGAAAAAAACCCTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTATCCCTTCCGTATGTC</pcr_primer_p1>
		<pcr_primer_p2>AAATAATTGGGTAAAATATGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTMTTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31530</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>415240</contig_pos>
        <strand>+</strand>
        <context>ATTTCCTGTM[C/T]KTCWTTGTMR</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTA</left_flank>
        <right_flank>TTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGGGCCCCCTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACAGTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAATTTCACATTTTGATTAATTGGAAAAAGAGTGATTATGGTGATCTGTGATATTTGCGATACAGTATGACCAGTACCGGTAAATGAGATATACAGCACTCTTTTTTTAGAAATTTTCCCCATTCTGGAGCTCGGCAGCCAAGTTTACGATCATTTTGAAATTTGTGGAGAATGTAAAACAGATAAAGATTGAAGACCTTACATTATCAGAATTTTTCAAAAGTTCCTAGTTTTTAAGCTTCTTACCCATTTCTGAAAAAAACCCTTTTTG</canonical>
            <polymorphic>TGAGGGCCCCCTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTAYTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACAGTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAATTTCACATTTTGATTAATTGGAAAAAGAGTGATTATGGTGATCTGTGATATTTGCGATACAGTATGACCAGTACCGGTAAATGAGATATACAGCACTCTTTTTTTAGAAATTTTCCCCATTCTGGAGCTCGGCAGCCAAGTTTACGATCATTTTGAAATTTGTGGAGAATGTAAAACAGATAAAGATTGAAGACCTTACATTATCAGAATTTTTCAAAAGTTCCTAGTTTTTAAGCTTCTTACCCATTTCTGAAAAAAACCCTTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTATCCCTTCCGTATGTC</pcr_primer_p1>
		<pcr_primer_p2>AAATAATTGGGTAAAATATGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTAYTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31531</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>415244</contig_pos>
        <strand>+</strand>
        <context>CCTGTMYKTC[A/T]TTGTMRAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTC</left_flank>
        <right_flank>TTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCCCCCTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACAGTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAATTTCACATTTTGATTAATTGGAAAAAGAGTGATTATGGTGATCTGTGATATTTGCGATACAGTATGACCAGTACCGGTAAATGAGATATACAGCACTCTTTTTTTAGAAATTTTCCCCATTCTGGAGCTCGGCAGCCAAGTTTACGATCATTTTGAAATTTGTGGAGAATGTAAAACAGATAAAGATTGAAGACCTTACATTATCAGAATTTTTCAAAAGTTCCTAGTTTTTAAGCTTCTTACCCATTTCTGAAAAAAACCCTTTTTGTCCC</canonical>
            <polymorphic>GGCCCCCTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCWTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACAGTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAATTTCACATTTTGATTAATTGGAAAAAGAGTGATTATGGTGATCTGTGATATTTGCGATACAGTATGACCAGTACCGGTAAATGAGATATACAGCACTCTTTTTTTAGAAATTTTCCCCATTCTGGAGCTCGGCAGCCAAGTTTACGATCATTTTGAAATTTGTGGAGAATGTAAAACAGATAAAGATTGAAGACCTTACATTATCAGAATTTTTCAAAAGTTCCTAGTTTTTAAGCTTCTTACCCATTTCTGAAAAAAACCCTTTTTGTCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTATCCCTTCCGTATGTC</pcr_primer_p1>
		<pcr_primer_p2>AAATAATTGGGTAAAATATGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCWTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31532</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>415249</contig_pos>
        <strand>+</strand>
        <context>MYKTCWTTGT[A/C]RAAAGAGAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGT</left_flank>
        <right_flank>AAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACAGTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAATTTCACATTTTGATTAATTGGAAAAAGAGTGATTATGGTGATCTGTGATATTTGCGATACAGTATGACCAGTACCGGTAAATGAGATATACAGCACTCTTTTTTTAGAAATTTTCCCCATTCTGGAGCTCGGCAGCCAAGTTTACGATCATTTTGAAATTTGTGGAGAATGTAAAACAGATAAAGATTGAAGACCTTACATTATCAGAATTTTTCAAAAGTTCCTAGTTTTTAAGCTTCTTACCCATTTCTGAAAAAAACCCTTTTTGTCCCGTTTT</canonical>
            <polymorphic>CCTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTMAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACAGTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAATTTCACATTTTGATTAATTGGAAAAAGAGTGATTATGGTGATCTGTGATATTTGCGATACAGTATGACCAGTACCGGTAAATGAGATATACAGCACTCTTTTTTTAGAAATTTTCCCCATTCTGGAGCTCGGCAGCCAAGTTTACGATCATTTTGAAATTTGTGGAGAATGTAAAACAGATAAAGATTGAAGACCTTACATTATCAGAATTTTTCAAAAGTTCCTAGTTTTTAAGCTTCTTACCCATTTCTGAAAAAAACCCTTTTTGTCCCGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTATCCCTTCCGTATGTC</pcr_primer_p1>
		<pcr_primer_p2>AAATAATTGGGTAAAATATGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTMAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31533</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>415250</contig_pos>
        <strand>+</strand>
        <context>YKTCWTTGTM[A/G]AAAGAGAAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTC</left_flank>
        <right_flank>AAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACAGTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAATTTCACATTTTGATTAATTGGAAAAAGAGTGATTATGGTGATCTGTGATATTTGCGATACAGTATGACCAGTACCGGTAAATGAGATATACAGCACTCTTTTTTTAGAAATTTTCCCCATTCTGGAGCTCGGCAGCCAAGTTTACGATCATTTTGAAATTTGTGGAGAATGTAAAACAGATAAAGATTGAAGACCTTACATTATCAGAATTTTTCAAAAGTTCCTAGTTTTTAAGCTTCTTACCCATTTCTGAAAAAAACCCTTTTTGTCCCGTTTTT</canonical>
            <polymorphic>CTAATGTCCCCTCTTCTTCTAACCTCATCGTTCATCTAATTAGCACGTTCGCTTTCTTCAATATGTTTCCCTTCTTGCTAATCCAGCCAATTTCGCGCCCAAGGTGTCCGAACAATGAACCGAGACGATTCATTTTCAAAACGTTTCGTGTCATTTTGGATACGTCAAAAAAAAAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCRAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACAGTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAATTTCACATTTTGATTAATTGGAAAAAGAGTGATTATGGTGATCTGTGATATTTGCGATACAGTATGACCAGTACCGGTAAATGAGATATACAGCACTCTTTTTTTAGAAATTTTCCCCATTCTGGAGCTCGGCAGCCAAGTTTACGATCATTTTGAAATTTGTGGAGAATGTAAAACAGATAAAGATTGAAGACCTTACATTATCAGAATTTTTCAAAAGTTCCTAGTTTTTAAGCTTCTTACCCATTTCTGAAAAAAACCCTTTTTGTCCCGTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTATCCCTTCCGTATGTC</pcr_primer_p1>
		<pcr_primer_p2>AAATAATTGGGTAAAATATGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCRAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31534</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>415423</contig_pos>
        <strand>+</strand>
        <context>TTTCGAAGAC[A/C]GTTTTATCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGAC</left_flank>
        <right_flank>GTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACAGTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAATTTCACATTTTGATTAATTGGAAAAAGAGTGATTATGGTGATCTGTGATATTTGCGATACAGTATGACCAGTACCGGTAAATGAGATATACAGCACTCTTTTTTTAGAAATTTTCCCCATTCTGGAGCTCGGCAGCCAAGTTTACGATCATTTTGAAATTTGTGGAGAATGTAAAACAGATAAAGATTGAAGACCTTACATTATCAGAATTTTTCAAAAGTTCCTAGTTTTTAAGCTTCTTACCCATTTCTGAAAAAAACCCTTTTTGTCCCGTTTTTCGTATTAAAAACGTGAGAAACAGGTTTCTTTCAGAAATCAACAAATATCTGAAAAACTAGATTTTTTCAAAAATTCTGTGAATGCAAAGGTATCAATCTACATAGGTATATTTTTCATTTTCAAAAATTTTCAAACTGATCGGAAACGTGACACACGAGCTTTGGACTACGGA</canonical>
            <polymorphic>AAGACCCAAAAATGGGTCCCAATTTGGGGTCAAATTTGGGCAGAAAAACGGGAAAGAAAAAGAAGAAGTCAGTCACAGGTCGGAGCCACTCATGTCAGTCAAATGTACACCTGCCTCTTCCCCCCACCAGTGCCTTCTGTTCTCCTTTTTCGTGTGTCACCTCCTCCCACCACCACCTTCCCTAACGTCTTCAATCTCTTTTATCCCTTCCGTATGTCATATAGATTCCCAGGATTACCGTTTTCTCGACAATGTCGGGGCGGGTCGACAATTATGCGATCCTCTCTTCTCTCGAGAACGGTTGCCATTTCCTGTATTTCCTTGTCAAAAGAGAAGCGCACACCTTCTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACMGTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAATTTCACATTTTGATTAATTGGAAAAAGAGTGATTATGGTGATCTGTGATATTTGCGATACAGTATGACCAGTACCGGTAAATGAGATATACAGCACTCTTTTTTTAGAAATTTTCCCCATTCTGGAGCTCGGCAGCCAAGTTTACGATCATTTTGAAATTTGTGGAGAATGTAAAACAGATAAAGATTGAAGACCTTACATTATCAGAATTTTTCAAAAGTTCCTAGTTTTTAAGCTTCTTACCCATTTCTGAAAAAAACCCTTTTTGTCCCGTTTTTCGTATTAAAAACGTGAGAAACAGGTTTCTTTCAGAAATCAACAAATATCTGAAAAACTAGATTTTTTCAAAAATTCTGTGAATGCAAAGGTATCAATCTACATAGGTATATTTTTCATTTTCAAAAATTTTCAAACTGATCGGAAACGTGACACACGAGCTTTGGACTACGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTACCTACCTTGGAATCTTGAGT</pcr_primer_p1>
		<pcr_primer_p2>CACAGATCACCATAATCACTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACAGTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAATTTCACATTTTGATTAATTGGAAAAAGAGTGATTATGGTGATCTGTG</canonical_amplicon>
		<polymorphic_amplicon>CTACCTACCTTGGAATCTTGAGTAAAGTCTAATTATGCTCGTATAGGACTATTGTAATTACCGTATAATTATCTTTTATACTCCATATTTTACCCAATTATTTTACCCCATTCTCGACGGAGTTTTAAAGTTCATTCGCATCGTTTCGAAGACMGTTTTATCTCCCATTGTCTCTCCATTTTTTGGCATTTCGCTATCAGAAATTTCACATTTTGATTAATTGGAAAAAGAGTGATTATGGTGATCTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31535</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>416047</contig_pos>
        <strand>+</strand>
        <context>CYTTTGATTT[A/T]TTGAATCTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATAATAAATTGTTTGGTACTGTATTTATTCAAGTAAGATCCTTTGATTT</left_flank>
        <right_flank>TTGAATCTACCATATACACGGCTTCTCACGATTTACAAGGCCAGCATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTAAATGAGATATACAGCACTCTTTTTTTAGAAATTTTCCCCATTCTGGAGCTCGGCAGCCAAGTTTACGATCATTTTGAAATTTGTGGAGAATGTAAAACAGATAAAGATTGAAGACCTTACATTATCAGAATTTTTCAAAAGTTCCTAGTTTTTAAGCTTCTTACCCATTTCTGAAAAAAACCCTTTTTGTCCCGTTTTTCGTATTAAAAACGTGAGAAACAGGTTTCTTTCAGAAATCAACAAATATCTGAAAAACTAGATTTTTTCAAAAATTCTGTGAATGCAAAGGTATCAATCTACATAGGTATATTTTTCATTTTCAAAAATTTTCAAACTGATCGGAAACGTGACACACGAGCTTTGGACTACGGAAGATGTTCAAAAATGACCGAAATTCTTCAGAAAAAGCATTTCTGCGTATCTAGATAATAAATTGTTCAATCTGCATAATAAATTGTTTGGTACTGTATTTATTCAAGTAAGATCCTTTGATTTTTTGAATCTACCATATACACGGCTTCTCACGATTTACAAGGCCAGCATTTTCAAAAAATTGAACTGTCACCTCGCATCAGCATTCTGGCAGTCCTTATTCTCGTCTCCATACTCCTCTTATTATCCACCAAACCTATCCAGCGAGTATGTTTATATTATAAAACCAGAAGCCAAAACGGATCGTAAACCGGCGGCATCCTCCCGGCAGTAGCTTTTTCGCGGACTCAATTATGCCGACACGAGTCCATCTGTTAAGAGATGAGTTGACAGGTCCGCACATGTTGCTTTTAGGGTGTCTCTTTTTTGATCGTGCCGTGCACCAGAAGGTGCGAGAAAGAGAGGGGCTTGTAAATTTTCTGCTGACTCGAGATAGCACATCGTAAATTATGGCTCGATCGGAAAACAATTATTCTAGATTATTAAAGATCAATGCCGATAACGAGTATTGGGTTACAAGTGAGCAGAAGTCTGGAAGTTATATAGATCAAAAGGTCAATTGCA</canonical>
            <polymorphic>GGTAAATGAGATATACAGCACTCTTTTTTTAGAAATTTTCCCCATTCTGGAGCTCGGCAGCCAAGTTTACGATCATTTTGAAATTTGTGGAGAATGTAAAACAGATAAAGATTGAAGACCTTACATTATCAGAATTTTTCAAAAGTTCCTAGTTTTTAAGCTTCTTACCCATTTCTGAAAAAAACCCTTTTTGTCCCGTTTTTCGTATTAAAAACGTGAGAAACAGGTTTCTTTCAGAAATCAACAAATATCTGAAAAACTAGATTTTTTCAAAAATTCTGTGAATGCAAAGGTATCAATCTACATAGGTATATTTTTCATTTTCAAAAATTTTCAAACTGATCGGAAACGTGACACACGAGCTTTGGACTACGGAAGATGTTCAAAAATGACCGAAATTCTTCAGAAAAAGCATTTCTGCGTATCTAGATAATAAATTGTTCAATCTGCATAATAAATTGTTTGGTACTGTATTTATTCAAGTAAGATCCTTTGATTTWTTGAATCTACCATATACACGGCTTCTCACGATTTACAAGGCCAGCATTTTCAAAAAATTGAACTGTCACCTCGCATCAGCATTCTGGCAGTCCTTATTCTCGTCTCCATACTCCTCTTATTATCCACCAAACCTATCCAGCGAGTATGTTTATATTATAAAACCAGAAGCCAAAACGGATCGTAAACCGGCGGCATCCTCCCGGCAGTAGCTTTTTCGCGGACTCAATTATGCCGACACGAGTCCATCTGTTAAGAGATGAGTTGACAGGTCCGCACATGTTGCTTTTAGGGTGTCTCTTTTTTGATCGTGCCGTGCACCAGAAGGTGCGAGAAAGAGAGGGGCTTGTAAATTTTCTGCTGACTCGAGATAGCACATCGTAAATTATGGCTCGATCGGAAAACAATTATTCTAGATTATTAAAGATCAATGCCGATAACGAGTATTGGGTTACAAGTGAGCAGAAGTCTGGAAGTTATATAGATCAAAAGGTCAATTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTCAATCTGCATAATAAATTG</pcr_primer_p1>
		<pcr_primer_p2>GGATAGGTTTGGTGGATAATAAG</pcr_primer_p2>
		<pcr_amplicon_size>200</pcr_amplicon_size>
		<canonical_amplicon>TGTTCAATCTGCATAATAAATTGTTTGGTACTGTATTTATTCAAGTAAGATCCTTTGATTTTTTGAATCTACCATATACACGGCTTCTCACGATTTACAAGGCCAGCATTTTCAAAAAATTGAACTGTCACCTCGCATCAGCATTCTGGCAGTCCTTATTCTCGTCTCCATACTCCTCTTATTATCCACCAAACCTATCC</canonical_amplicon>
		<polymorphic_amplicon>TGTTCAATCTGCATAATAAATTGTTTGGTACTGTATTTATTCAAGTAAGATCCTTTGATTTWTTGAATCTACCATATACACGGCTTCTCACGATTTACAAGGCCAGCATTTTCAAAAAATTGAACTGTCACCTCGCATCAGCATTCTGGCAGTCCTTATTCTCGTCTCCATACTCCTCTTATTATCCACCAAACCTATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31536</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>416060</contig_pos>
        <strand>+</strand>
        <context>GAATCTACCA[A/G]ATACACGGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGGTACTGTATTTATTCAAGTAAGATCCTTTGATTTTTTGAATCTACCA</left_flank>
        <right_flank>ATACACGGCTTCTCACGATTTACAAGGCCAGCATTTTCAAAAAATTGAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACAGCACTCTTTTTTTAGAAATTTTCCCCATTCTGGAGCTCGGCAGCCAAGTTTACGATCATTTTGAAATTTGTGGAGAATGTAAAACAGATAAAGATTGAAGACCTTACATTATCAGAATTTTTCAAAAGTTCCTAGTTTTTAAGCTTCTTACCCATTTCTGAAAAAAACCCTTTTTGTCCCGTTTTTCGTATTAAAAACGTGAGAAACAGGTTTCTTTCAGAAATCAACAAATATCTGAAAAACTAGATTTTTTCAAAAATTCTGTGAATGCAAAGGTATCAATCTACATAGGTATATTTTTCATTTTCAAAAATTTTCAAACTGATCGGAAACGTGACACACGAGCTTTGGACTACGGAAGATGTTCAAAAATGACCGAAATTCTTCAGAAAAAGCATTTCTGCGTATCTAGATAATAAATTGTTCAATCTGCATAATAAATTGTTTGGTACTGTATTTATTCAAGTAAGATCCTTTGATTTTTTGAATCTACCATATACACGGCTTCTCACGATTTACAAGGCCAGCATTTTCAAAAAATTGAACTGTCACCTCGCATCAGCATTCTGGCAGTCCTTATTCTCGTCTCCATACTCCTCTTATTATCCACCAAACCTATCCAGCGAGTATGTTTATATTATAAAACCAGAAGCCAAAACGGATCGTAAACCGGCGGCATCCTCCCGGCAGTAGCTTTTTCGCGGACTCAATTATGCCGACACGAGTCCATCTGTTAAGAGATGAGTTGACAGGTCCGCACATGTTGCTTTTAGGGTGTCTCTTTTTTGATCGTGCCGTGCACCAGAAGGTGCGAGAAAGAGAGGGGCTTGTAAATTTTCTGCTGACTCGAGATAGCACATCGTAAATTATGGCTCGATCGGAAAACAATTATTCTAGATTATTAAAGATCAATGCCGATAACGAGTATTGGGTTACAAGTGAGCAGAAGTCTGGAAGTTATATAGATCAAAAGGTCAATTGCAGATCCGATTTCTC</canonical>
            <polymorphic>TACAGCACTCTTTTTTTAGAAATTTTCCCCATTCTGGAGCTCGGCAGCCAAGTTTACGATCATTTTGAAATTTGTGGAGAATGTAAAACAGATAAAGATTGAAGACCTTACATTATCAGAATTTTTCAAAAGTTCCTAGTTTTTAAGCTTCTTACCCATTTCTGAAAAAAACCCTTTTTGTCCCGTTTTTCGTATTAAAAACGTGAGAAACAGGTTTCTTTCAGAAATCAACAAATATCTGAAAAACTAGATTTTTTCAAAAATTCTGTGAATGCAAAGGTATCAATCTACATAGGTATATTTTTCATTTTCAAAAATTTTCAAACTGATCGGAAACGTGACACACGAGCTTTGGACTACGGAAGATGTTCAAAAATGACCGAAATTCTTCAGAAAAAGCATTTCTGCGTATCTAGATAATAAATTGTTCAATCTGCATAATAAATTGTTTGGTACTGTATTTATTCAAGTAAGATCCTTTGATTTTTTGAATCTACCARATACACGGCTTCTCACGATTTACAAGGCCAGCATTTTCAAAAAATTGAACTGTCACCTCGCATCAGCATTCTGGCAGTCCTTATTCTCGTCTCCATACTCCTCTTATTATCCACCAAACCTATCCAGCGAGTATGTTTATATTATAAAACCAGAAGCCAAAACGGATCGTAAACCGGCGGCATCCTCCCGGCAGTAGCTTTTTCGCGGACTCAATTATGCCGACACGAGTCCATCTGTTAAGAGATGAGTTGACAGGTCCGCACATGTTGCTTTTAGGGTGTCTCTTTTTTGATCGTGCCGTGCACCAGAAGGTGCGAGAAAGAGAGGGGCTTGTAAATTTTCTGCTGACTCGAGATAGCACATCGTAAATTATGGCTCGATCGGAAAACAATTATTCTAGATTATTAAAGATCAATGCCGATAACGAGTATTGGGTTACAAGTGAGCAGAAGTCTGGAAGTTATATAGATCAAAAGGTCAATTGCAGATCCGATTTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTCAATCTGCATAATAAATTG</pcr_primer_p1>
		<pcr_primer_p2>GGATAGGTTTGGTGGATAATAAG</pcr_primer_p2>
		<pcr_amplicon_size>200</pcr_amplicon_size>
		<canonical_amplicon>TGTTCAATCTGCATAATAAATTGTTTGGTACTGTATTTATTCAAGTAAGATCCTTTGATTTTTTGAATCTACCATATACACGGCTTCTCACGATTTACAAGGCCAGCATTTTCAAAAAATTGAACTGTCACCTCGCATCAGCATTCTGGCAGTCCTTATTCTCGTCTCCATACTCCTCTTATTATCCACCAAACCTATCC</canonical_amplicon>
		<polymorphic_amplicon>TGTTCAATCTGCATAATAAATTGTTTGGTACTGTATTTATTCAAGTAAGATCCTTTGATTTTTTGAATCTACCARATACACGGCTTCTCACGATTTACAAGGCCAGCATTTTCAAAAAATTGAACTGTCACCTCGCATCAGCATTCTGGCAGTCCTTATTCTCGTCTCCATACTCCTCTTATTATCCACCAAACCTATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31537</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>417922</contig_pos>
        <strand>+</strand>
        <context>GGGTCGTCCC[C/T]TCTTCTCCCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTTCGTACGGTTTCGATTTAGGCTCCGCCCCTCCGGCCGGGTCGTCCC</left_flank>
        <right_flank>TCTTCTCCCCGCCTTCTTCTTCTTCTTCTCGCCCCGGTGTTCACTTCTTC</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAATATTCAAATCGACCCTCCAGTTGTTCCCGCCAGTTCTTCTTGTCCTTTTTGGCGCGCTTGACGGAATTTTACTATGTGATTCTTCAGTCGTTCCCTTGTTTCCGCTACACCACTTTCGTTCCAATGAAGCATGATGATTTTTTCTGCTTCATGCTAAATGTAAGATGGGCATGGGTAGAGCCTGCAGAAACATCTGGCAACAGTTTCGAAGCAAACAAAGTTCAGTTCTCTTATCTTTTCTCTCTTTTTTTTTGTTTTTTTTTCGACATTTTGCTCTACTATCCATCGTCTTCTTCCCTCCAATCTACTCCAACAGATTTTTCTTTAGCTCTTTAGAGAAAAGACCCAAAGAAAAAGGGAAATTTTTCTATTAATTCATCATCGAAATTTAGAAACATACCAGGTGTCTGTTAGGCACCACTTGCACTCTCCATCAAACACTTACTATTTCGTACGGTTTCGATTTAGGCTCCGCCCCTCCGGCCGGGTCGTCCCTTCTTCTCCCCGCCTTCTTCTTCTTCTTCTCGCCCCGGTGTTCACTTCTTCTCGTGCAGCACACGACCCACTTTCTCTCCATCTCCTCTGCTTCCCCCCACTCCTTTTCTCTATAGGAGGATAGGAGGACCGTACGGATTTTAGGCCTAAATTTTTTGATCTTCAGCGCTTCTCAGCTTTCCTGACCCCTACAAAGAAGTTTTTTTTTCAGAAACAATGCGTATCCCATTCATAGTCTTGGGGCTGCTGCTGGTGACTACGGTATTTGCCAATGACTCGACTCGCGTTTTCATCGGAGAGCTCTTCGAGCACAACCTCGGCGACAACTTCACTGTGGCATCTGGAAAAAACAATCGCCCGCTTCCCTCTTGGCTTATGATCCGCGATCAGATTCTTACTGGTATCCCGACCGAGAACGATGTTGGCAAGCACACTGTTATGGTGAGTCAGAAGGCGGGAAGGGAAAACGTAGAAATAGAAGGAGGAGATAGTATTTGGTAG</canonical>
            <polymorphic>TGAATATTCAAATCGACCCTCCAGTTGTTCCCGCCAGTTCTTCTTGTCCTTTTTGGCGCGCTTGACGGAATTTTACTATGTGATTCTTCAGTCGTTCCCTTGTTTCCGCTACACCACTTTCGTTCCAATGAAGCATGATGATTTTTTCTGCTTCATGCTAAATGTAAGATGGGCATGGGTAGAGCCTGCAGAAACATCTGGCAACAGTTTCGAAGCAAACAAAGTTCAGTTCTCTTATCTTTTCTCTCTTTTTTTTTGTTTTTTTTTCGACATTTTGCTCTACTATCCATCGTCTTCTTCCCTCCAATCTACTCCAACAGATTTTTCTTTAGCTCTTTAGAGAAAAGACCCAAAGAAAAAGGGAAATTTTTCTATTAATTCATCATCGAAATTTAGAAACATACCAGGTGTCTGTTAGGCACCACTTGCACTCTCCATCAAACACTTACTATTTCGTACGGTTTCGATTTAGGCTCCGCCCCTCCGGCCGGGTCGTCCCYTCTTCTCCCCGCCTTCTTCTTCTTCTTCTCGCCCCGGTGTTCACTTCTTCTCGTGCAGCACACGACCCACTTTCTCTCCATCTCCTCTGCTTCCCCCCACTCCTTTTCTCTATAGGAGGATAGGAGGACCGTACGGATTTTAGGCCTAAATTTTTTGATCTTCAGCGCTTCTCAGCTTTCCTGACCCCTACAAAGAAGTTTTTTTTTCAGAAACAATGCGTATCCCATTCATAGTCTTGGGGCTGCTGCTGGTGACTACGGTATTTGCCAATGACTCGACTCGCGTTTTCATCGGAGAGCTCTTCGAGCACAACCTCGGCGACAACTTCACTGTGGCATCTGGAAAAAACAATCGCCCGCTTCCCTCTTGGCTTATGATCCGCGATCAGATTCTTACTGGTATCCCGACCGAGAACGATGTTGGCAAGCACACTGTTATGGTGAGTCAGAAGGCGGGAAGGGAAAACGTAGAAATAGAAGGAGGAGATAGTATTTGGTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAGAAAAGACCCAAAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGAGGAGATGGAGAGAAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAGAGAAAAGACCCAAAGAAAAAGGGAAATTTTTCTATTAATTCATCATCGAAATTTAGAAACATACCAGGTGTCTGTTAGGCACCACTTGCACTCTCCATCAAACACTTACTATTTCGTACGGTTTCGATTTAGGCTCCGCCCCTCCGGCCGGGTCGTCCCTTCTTCTCCCCGCCTTCTTCTTCTTCTTCTCGCCCCGGTGTTCACTTCTTCTCGTGCAGCACACGACCCACTTTCTCTCCATCTCCTCT</canonical_amplicon>
		<polymorphic_amplicon>TAGAGAAAAGACCCAAAGAAAAAGGGAAATTTTTCTATTAATTCATCATCGAAATTTAGAAACATACCAGGTGTCTGTTAGGCACCACTTGCACTCTCCATCAAACACTTACTATTTCGTACGGTTTCGATTTAGGCTCCGCCCCTCCGGCCGGGTCGTCCCYTCTTCTCCCCGCCTTCTTCTTCTTCTTCTCGCCCCGGTGTTCACTTCTTCTCGTGCAGCACACGACCCACTTTCTCTCCATCTCCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31538</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>439000</contig_pos>
        <strand></strand>
        <context>AGTAAAAAGY[A/G]AATACACAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCTTTGGCTGTAGCACTGTTGGAAACTTTGGTACGACGCAGTAAAAAGC</left_flank>
        <right_flank>AATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAA</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAATGAAAACTCTGGAGAAGCAAAGTGAAAATAAAAAATCTGGAACTAGTAAATAAGGTTTGAACGGAGGATTGATCGTTGTGGACACCCTACATTGGTCCGGCGACCAATGAGTGTTTACAGAAACGTGAGTATGGTACATTCTGTCCGTAGTTCAATTCTCCGTAGTTCACGCCTACAGTTTCAGGGCAGCCAATGAGCGGTGGACATGCGTGTGGAAAATTCTGTCTGCTCGGACAAACCGAAATTTTGATAGTACGAGCAACCCCCTCATGGCTGCAGGGAGGCCAGCGGGTGAGGAGGAGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGAATCAATGGTCAATTTGGACACGGACCAATCTATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTGTTGGAAACTTTGGTACGACGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACTCTTTCAATTAGTCAGACGACGTTGGAGGGTCTAGGAATCTTTAAGAGAATATCCTATTCCTTTAGAAATTTAGTTTTTCTTCACTTCTGAATCTGTTAAACCAGCAAGAAAAAGAAAATTTAAAAATTTATTTGAGTT</canonical>
            <polymorphic>ATTAATGAAAACTCTGGAGAAGCAAAGTGAAAATAAAAAATCTGGAACTAGTAAATAAGGTTTGAACGGAGGATTGATCGTTGTGGACACCCTACATTGGTCCGGCGACCAATGAGTGTTTACAGAAACGTGAGTATGGTACATTCTGTCCGTAGTTCAATTCTCCGTAGTTCACGCCTACAGTTTCAGGGCAGCCAATGAGCGGTGGACATGCGTGTGGAAAATTCTGTCTGCTCGGACAAACCGAAATTTTGATAGTACGAGCAACCCCCTCATGGCTGCAGGGAGGCCAGCGGGTGAGGAGGAGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGAATCAATGGTCAATTTGGACACGGACCAATCTATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTGTTGGAAACTTTGGTACGACGCAGTAAAAAGCRAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACTCTTTCAATTAGTCAGACGACGTTGGAGGGTCTAGGAATCTTTAAGAGAATATCCTATTCCTTTAGAAATTTAGTTTTTCTTCACTTCTGAATCTGTTAAACCAGCAAGAAAAAGAAAATTTAAAAATTTATTTGAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATAGAGAGAACCAAATGAGA</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAGCGTTATTTTGGAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTGTTGGAAACTTTGGTACGACGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>ATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTGTTGGAAACTTTGGTACGACGCAGTAAAAAGCRAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31539</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>439188</contig_pos>
        <strand></strand>
        <context>ATACTTGGGT[A/G]GATCTTAARC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGT</left_flank>
        <right_flank>GATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGC</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGCAGCCAATGAGCGGTGGACATGCGTGTGGAAAATTCTGTCTGCTCGGACAAACCGAAATTTTGATAGTACGAGCAACCCCCTCATGGCTGCAGGGAGGCCAGCGGGTGAGGAGGAGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGAATCAATGGTCAATTTGGACACGGACCAATCTATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTGTTGGAAACTTTGGTACGACGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACTCTTTCAATTAGTCAGACGACGTTGGAGGGTCTAGGAATCTTTAAGAGAATATCCTATTCCTTTAGAAATTTAGTTTTTCTTCACTTCTGAATCTGTTAAACCAGCAAGAAAAAGAAAATTTAAAAATTTATTTGAGTTTAGGTGGAGTTCATGAAATTGGTCGAAGTTGGATTAAAGCGAAAAATAAAAATTGAAAATACCAAAAGTAGCCGAGTTCGATGTTTGGAGTGGGGAAGTGATTATCATCTCTGCGCATTAACCCATTTTCACTGATTCCATTGATTTTTGTTTTCTTCTTTCAGGTTTGCACTTCTCGGATCATTAAC</canonical>
            <polymorphic>GGGCAGCCAATGAGCGGTGGACATGCGTGTGGAAAATTCTGTCTGCTCGGACAAACCGAAATTTTGATAGTACGAGCAACCCCCTCATGGCTGCAGGGAGGCCAGCGGGTGAGGAGGAGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGAATCAATGGTCAATTTGGACACGGACCAATCTATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTGTTGGAAACTTTGGTACGACGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTRGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACTCTTTCAATTAGTCAGACGACGTTGGAGGGTCTAGGAATCTTTAAGAGAATATCCTATTCCTTTAGAAATTTAGTTTTTCTTCACTTCTGAATCTGTTAAACCAGCAAGAAAAAGAAAATTTAAAAATTTATTTGAGTTTAGGTGGAGTTCATGAAATTGGTCGAAGTTGGATTAAAGCGAAAAATAAAAATTGAAAATACCAAAAGTAGCCGAGTTCGATGTTTGGAGTGGGGAAGTGATTATCATCTCTGCGCATTAACCCATTTTCACTGATTCCATTGATTTTTGTTTTCTTCTTTCAGGTTTGCACTTCTCGGATCATTAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGTTCCAAAATAACGCTTCT</pcr_primer_p1>
		<pcr_primer_p2>AGTACTATCAGCCAGCTTCTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACT</canonical_amplicon>
		<polymorphic_amplicon>GTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTRGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31540</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>439197</contig_pos>
        <strand></strand>
        <context>TRGATCTTAA[A/G]CAAGGCTGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAA</left_flank>
        <right_flank>CAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAA</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAGCGGTGGACATGCGTGTGGAAAATTCTGTCTGCTCGGACAAACCGAAATTTTGATAGTACGAGCAACCCCCTCATGGCTGCAGGGAGGCCAGCGGGTGAGGAGGAGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGAATCAATGGTCAATTTGGACACGGACCAATCTATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTGTTGGAAACTTTGGTACGACGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACTCTTTCAATTAGTCAGACGACGTTGGAGGGTCTAGGAATCTTTAAGAGAATATCCTATTCCTTTAGAAATTTAGTTTTTCTTCACTTCTGAATCTGTTAAACCAGCAAGAAAAAGAAAATTTAAAAATTTATTTGAGTTTAGGTGGAGTTCATGAAATTGGTCGAAGTTGGATTAAAGCGAAAAATAAAAATTGAAAATACCAAAAGTAGCCGAGTTCGATGTTTGGAGTGGGGAAGTGATTATCATCTCTGCGCATTAACCCATTTTCACTGATTCCATTGATTTTTGTTTTCTTCTTTCAGGTTTGCACTTCTCGGATCATTAACACTTAAAAA</canonical>
            <polymorphic>ATGAGCGGTGGACATGCGTGTGGAAAATTCTGTCTGCTCGGACAAACCGAAATTTTGATAGTACGAGCAACCCCCTCATGGCTGCAGGGAGGCCAGCGGGTGAGGAGGAGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGAATCAATGGTCAATTTGGACACGGACCAATCTATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTGTTGGAAACTTTGGTACGACGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAARCAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACTCTTTCAATTAGTCAGACGACGTTGGAGGGTCTAGGAATCTTTAAGAGAATATCCTATTCCTTTAGAAATTTAGTTTTTCTTCACTTCTGAATCTGTTAAACCAGCAAGAAAAAGAAAATTTAAAAATTTATTTGAGTTTAGGTGGAGTTCATGAAATTGGTCGAAGTTGGATTAAAGCGAAAAATAAAAATTGAAAATACCAAAAGTAGCCGAGTTCGATGTTTGGAGTGGGGAAGTGATTATCATCTCTGCGCATTAACCCATTTTCACTGATTCCATTGATTTTTGTTTTCTTCTTTCAGGTTTGCACTTCTCGGATCATTAACACTTAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTTCCAAAATAACGCTTCT</pcr_primer_p1>
		<pcr_primer_p2>AGTACTATCAGCCAGCTTCTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACT</canonical_amplicon>
		<polymorphic_amplicon>GTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAARCAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31541</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>439216</contig_pos>
        <strand></strand>
        <context>TTGAAAAAGG[C/G]TAACAGCTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGG</left_flank>
        <right_flank>TAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGGAAAATTCTGTCTGCTCGGACAAACCGAAATTTTGATAGTACGAGCAACCCCCTCATGGCTGCAGGGAGGCCAGCGGGTGAGGAGGAGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGAATCAATGGTCAATTTGGACACGGACCAATCTATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTGTTGGAAACTTTGGTACGACGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACTCTTTCAATTAGTCAGACGACGTTGGAGGGTCTAGGAATCTTTAAGAGAATATCCTATTCCTTTAGAAATTTAGTTTTTCTTCACTTCTGAATCTGTTAAACCAGCAAGAAAAAGAAAATTTAAAAATTTATTTGAGTTTAGGTGGAGTTCATGAAATTGGTCGAAGTTGGATTAAAGCGAAAAATAAAAATTGAAAATACCAAAAGTAGCCGAGTTCGATGTTTGGAGTGGGGAAGTGATTATCATCTCTGCGCATTAACCCATTTTCACTGATTCCATTGATTTTTGTTTTCTTCTTTCAGGTTTGCACTTCTCGGATCATTAACACTTAAAAATAGAAATATTGAATATTTG</canonical>
            <polymorphic>GTGGAAAATTCTGTCTGCTCGGACAAACCGAAATTTTGATAGTACGAGCAACCCCCTCATGGCTGCAGGGAGGCCAGCGGGTGAGGAGGAGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGAATCAATGGTCAATTTGGACACGGACCAATCTATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTGTTGGAAACTTTGGTACGACGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGSTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACTCTTTCAATTAGTCAGACGACGTTGGAGGGTCTAGGAATCTTTAAGAGAATATCCTATTCCTTTAGAAATTTAGTTTTTCTTCACTTCTGAATCTGTTAAACCAGCAAGAAAAAGAAAATTTAAAAATTTATTTGAGTTTAGGTGGAGTTCATGAAATTGGTCGAAGTTGGATTAAAGCGAAAAATAAAAATTGAAAATACCAAAAGTAGCCGAGTTCGATGTTTGGAGTGGGGAAGTGATTATCATCTCTGCGCATTAACCCATTTTCACTGATTCCATTGATTTTTGTTTTCTTCTTTCAGGTTTGCACTTCTCGGATCATTAACACTTAAAAATAGAAATATTGAATATTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>220 145 142 119 108 74 62 59 26 13 11 7 6 4 4</canonical_bands>
                <polymorphic_bands>220 145 142 119 108 74 62 59 26 20 11 6 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGTTCCAAAATAACGCTTCT</pcr_primer_p1>
		<pcr_primer_p2>AGTACTATCAGCCAGCTTCTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACT</canonical_amplicon>
		<polymorphic_amplicon>GTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGSTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31542</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>439277</contig_pos>
        <strand></strand>
        <context>AAAAATAACT[T/C]TGCCAMAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACT</left_flank>
        <right_flank>TGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTGCAGGGAGGCCAGCGGGTGAGGAGGAGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGAATCAATGGTCAATTTGGACACGGACCAATCTATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTGTTGGAAACTTTGGTACGACGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACTCTTTCAATTAGTCAGACGACGTTGGAGGGTCTAGGAATCTTTAAGAGAATATCCTATTCCTTTAGAAATTTAGTTTTTCTTCACTTCTGAATCTGTTAAACCAGCAAGAAAAAGAAAATTTAAAAATTTATTTGAGTTTAGGTGGAGTTCATGAAATTGGTCGAAGTTGGATTAAAGCGAAAAATAAAAATTGAAAATACCAAAAGTAGCCGAGTTCGATGTTTGGAGTGGGGAAGTGATTATCATCTCTGCGCATTAACCCATTTTCACTGATTCCATTGATTTTTGTTTTCTTCTTTCAGGTTTGCACTTCTCGGATCATTAACACTTAAAAATAGAAATATTGAATATTTGAATTACTGTATCTTTTGTTACCTGACTGAAATGCAGTTGGATTGACGAAGAAGCTGGTTTC</canonical>
            <polymorphic>GCTGCAGGGAGGCCAGCGGGTGAGGAGGAGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGAATCAATGGTCAATTTGGACACGGACCAATCTATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTGTTGGAAACTTTGGTACGACGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTYTGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACTCTTTCAATTAGTCAGACGACGTTGGAGGGTCTAGGAATCTTTAAGAGAATATCCTATTCCTTTAGAAATTTAGTTTTTCTTCACTTCTGAATCTGTTAAACCAGCAAGAAAAAGAAAATTTAAAAATTTATTTGAGTTTAGGTGGAGTTCATGAAATTGGTCGAAGTTGGATTAAAGCGAAAAATAAAAATTGAAAATACCAAAAGTAGCCGAGTTCGATGTTTGGAGTGGGGAAGTGATTATCATCTCTGCGCATTAACCCATTTTCACTGATTCCATTGATTTTTGTTTTCTTCTTTCAGGTTTGCACTTCTCGGATCATTAACACTTAAAAATAGAAATATTGAATATTTGAATTACTGTATCTTTTGTTACCTGACTGAAATGCAGTTGGATTGACGAAGAAGCTGGTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTTCCAAAATAACGCTTCT</pcr_primer_p1>
		<pcr_primer_p2>AGTACTATCAGCCAGCTTCTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACT</canonical_amplicon>
		<polymorphic_amplicon>GTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTYTGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31543</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>439283</contig_pos>
        <strand></strand>
        <context>AACTYTGCCA[C/A]AAAGAAGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCA</left_flank>
        <right_flank>AAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGAGGCCAGCGGGTGAGGAGGAGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGAATCAATGGTCAATTTGGACACGGACCAATCTATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTGTTGGAAACTTTGGTACGACGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACTCTTTCAATTAGTCAGACGACGTTGGAGGGTCTAGGAATCTTTAAGAGAATATCCTATTCCTTTAGAAATTTAGTTTTTCTTCACTTCTGAATCTGTTAAACCAGCAAGAAAAAGAAAATTTAAAAATTTATTTGAGTTTAGGTGGAGTTCATGAAATTGGTCGAAGTTGGATTAAAGCGAAAAATAAAAATTGAAAATACCAAAAGTAGCCGAGTTCGATGTTTGGAGTGGGGAAGTGATTATCATCTCTGCGCATTAACCCATTTTCACTGATTCCATTGATTTTTGTTTTCTTCTTTCAGGTTTGCACTTCTCGGATCATTAACACTTAAAAATAGAAATATTGAATATTTGAATTACTGTATCTTTTGTTACCTGACTGAAATGCAGTTGGATTGACGAAGAAGCTGGTTTCTCATAC</canonical>
            <polymorphic>GGGAGGCCAGCGGGTGAGGAGGAGAAAACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGAATCAATGGTCAATTTGGACACGGACCAATCTATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTGTTGGAAACTTTGGTACGACGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCAMAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACTCTTTCAATTAGTCAGACGACGTTGGAGGGTCTAGGAATCTTTAAGAGAATATCCTATTCCTTTAGAAATTTAGTTTTTCTTCACTTCTGAATCTGTTAAACCAGCAAGAAAAAGAAAATTTAAAAATTTATTTGAGTTTAGGTGGAGTTCATGAAATTGGTCGAAGTTGGATTAAAGCGAAAAATAAAAATTGAAAATACCAAAAGTAGCCGAGTTCGATGTTTGGAGTGGGGAAGTGATTATCATCTCTGCGCATTAACCCATTTTCACTGATTCCATTGATTTTTGTTTTCTTCTTTCAGGTTTGCACTTCTCGGATCATTAACACTTAAAAATAGAAATATTGAATATTTGAATTACTGTATCTTTTGTTACCTGACTGAAATGCAGTTGGATTGACGAAGAAGCTGGTTTCTCATAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>127 104 94 90 87 86 61 41 40 40 37 33 31 22 21 20 18 16 15 8 5 2 2</canonical_bands>
                <polymorphic_bands>127 104 94 90 87 86 62 61 41 40 37 33 31 21 20 18 16 15 8 5 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGTTCCAAAATAACGCTTCT</pcr_primer_p1>
		<pcr_primer_p2>AGTACTATCAGCCAGCTTCTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACT</canonical_amplicon>
		<polymorphic_amplicon>GTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCAMAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31544</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>439310</contig_pos>
        <strand></strand>
        <context>TTTCACTTGA[A/C]AGAGAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGA</left_flank>
        <right_flank>AGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTA</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGAATCAATGGTCAATTTGGACACGGACCAATCTATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTGTTGGAAACTTTGGTACGACGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACTCTTTCAATTAGTCAGACGACGTTGGAGGGTCTAGGAATCTTTAAGAGAATATCCTATTCCTTTAGAAATTTAGTTTTTCTTCACTTCTGAATCTGTTAAACCAGCAAGAAAAAGAAAATTTAAAAATTTATTTGAGTTTAGGTGGAGTTCATGAAATTGGTCGAAGTTGGATTAAAGCGAAAAATAAAAATTGAAAATACCAAAAGTAGCCGAGTTCGATGTTTGGAGTGGGGAAGTGATTATCATCTCTGCGCATTAACCCATTTTCACTGATTCCATTGATTTTTGTTTTCTTCTTTCAGGTTTGCACTTCTCGGATCATTAACACTTAAAAATAGAAATATTGAATATTTGAATTACTGTATCTTTTGTTACCTGACTGAAATGCAGTTGGATTGACGAAGAAGCTGGTTTCTCATACACCTCGGCAACTGTGAAAAATTGAATA</canonical>
            <polymorphic>ACGGATAACAAGCAACTCAGTGAGAAAAAAGCGAGGGAAGTGTGAATCAATGGTCAATTTGGACACGGACCAATCTATGATAGAGAGAACCAAATGAGATGATATTGAGATGGGGACAAGGCTCGATAATGAGAAGATTATCTTTGGCTGTAGCACTGTTGGAAACTTTGGTACGACGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGAMAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACTCTTTCAATTAGTCAGACGACGTTGGAGGGTCTAGGAATCTTTAAGAGAATATCCTATTCCTTTAGAAATTTAGTTTTTCTTCACTTCTGAATCTGTTAAACCAGCAAGAAAAAGAAAATTTAAAAATTTATTTGAGTTTAGGTGGAGTTCATGAAATTGGTCGAAGTTGGATTAAAGCGAAAAATAAAAATTGAAAATACCAAAAGTAGCCGAGTTCGATGTTTGGAGTGGGGAAGTGATTATCATCTCTGCGCATTAACCCATTTTCACTGATTCCATTGATTTTTGTTTTCTTCTTTCAGGTTTGCACTTCTCGGATCATTAACACTTAAAAATAGAAATATTGAATATTTGAATTACTGTATCTTTTGTTACCTGACTGAAATGCAGTTGGATTGACGAAGAAGCTGGTTTCTCATACACCTCGGCAACTGTGAAAAATTGAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTCCAAAATAACGCTTCT</pcr_primer_p1>
		<pcr_primer_p2>AAGAGTACTATCAGCCAGCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACTCTT</canonical_amplicon>
		<polymorphic_amplicon>TGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGAMAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31545</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>439484</contig_pos>
        <strand></strand>
        <context>AAGAAAATTT[A/G]ARAATTTATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTTTTCTTCACTTCTGAATCTGTTAAACCAGCAAGAAAAAGAAAATTT</left_flank>
        <right_flank>AAAATTTATTTGAGTTTAGGTGGAGTTCATGAAATTGGTCGAAGTTGGAT</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACTCTTTCAATTAGTCAGACGACGTTGGAGGGTCTAGGAATCTTTAAGAGAATATCCTATTCCTTTAGAAATTTAGTTTTTCTTCACTTCTGAATCTGTTAAACCAGCAAGAAAAAGAAAATTTAAAAATTTATTTGAGTTTAGGTGGAGTTCATGAAATTGGTCGAAGTTGGATTAAAGCGAAAAATAAAAATTGAAAATACCAAAAGTAGCCGAGTTCGATGTTTGGAGTGGGGAAGTGATTATCATCTCTGCGCATTAACCCATTTTCACTGATTCCATTGATTTTTGTTTTCTTCTTTCAGGTTTGCACTTCTCGGATCATTAACACTTAAAAATAGAAATATTGAATATTTGAATTACTGTATCTTTTGTTACCTGACTGAAATGCAGTTGGATTGACGAAGAAGCTGGTTTCTCATACACCTCGGCAACTGTGAAAAATTGAATATCACCCGGACGATGTCCTCCCGGTTGTGATAACATTCAAAAGGCATGTCCAACTTCATTTCAAACCGAAAAGCCACATATGGAATTTCCAGAAGCCGGGAACTGAATTTTTCCATTCCAAGATTTCCGAGGGTTTTGAACAACTCCAATATAATTTGTTTGATATTGGTATTCA</canonical>
            <polymorphic>GACGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACTCTTTCAATTAGTCAGACGACGTTGGAGGGTCTAGGAATCTTTAAGAGAATATCCTATTCCTTTAGAAATTTAGTTTTTCTTCACTTCTGAATCTGTTAAACCAGCAAGAAAAAGAAAATTTRAAAATTTATTTGAGTTTAGGTGGAGTTCATGAAATTGGTCGAAGTTGGATTAAAGCGAAAAATAAAAATTGAAAATACCAAAAGTAGCCGAGTTCGATGTTTGGAGTGGGGAAGTGATTATCATCTCTGCGCATTAACCCATTTTCACTGATTCCATTGATTTTTGTTTTCTTCTTTCAGGTTTGCACTTCTCGGATCATTAACACTTAAAAATAGAAATATTGAATATTTGAATTACTGTATCTTTTGTTACCTGACTGAAATGCAGTTGGATTGACGAAGAAGCTGGTTTCTCATACACCTCGGCAACTGTGAAAAATTGAATATCACCCGGACGATGTCCTCCCGGTTGTGATAACATTCAAAAGGCATGTCCAACTTCATTTCAAACCGAAAAGCCACATATGGAATTTCCAGAAGCCGGGAACTGAATTTTTCCATTCCAAGATTTCCGAGGGTTTTGAACAACTCCAATATAATTTGTTTGATATTGGTATTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 407 92</canonical_bands>
                <polymorphic_bands>908 92</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>293 210 118 91 84 66 55 52 24 7</canonical_bands>
                <polymorphic_bands>293 210 118 91 84 76 66 55 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAGGAAGTCCGTTTGTGTAGA</pcr_primer_p1>
		<pcr_primer_p2>GCTACTTTTGGTATTTTCAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACTCTTTCAATTAGTCAGACGACGTTGGAGGGTCTAGGAATCTTTAAGAGAATATCCTATTCCTTTAGAAATTTAGTTTTTCTTCACTTCTGAATCTGTTAAACCAGCAAGAAAAAGAAAATTTAAAAATTTATTTGAGTTTAGGTGGAGTTCATGAAATTGGTCGAAGTTGGATTAAAGCGAAAAATAAAAATTGAAAATACCAAAAGTAGC</canonical_amplicon>
		<polymorphic_amplicon>ATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACTCTTTCAATTAGTCAGACGACGTTGGAGGGTCTAGGAATCTTTAAGAGAATATCCTATTCCTTTAGAAATTTAGTTTTTCTTCACTTCTGAATCTGTTAAACCAGCAAGAAAAAGAAAATTTRAAAATTTATTTGAGTTTAGGTGGAGTTCATGAAATTGGTCGAAGTTGGATTAAAGCGAAAAATAAAAATTGAAAATACCAAAAGTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31546</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>439486</contig_pos>
        <strand></strand>
        <context>GAAAATTTRA[A/G]AATTTATTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTCTTCACTTCTGAATCTGTTAAACCAGCAAGAAAAAGAAAATTTAA</left_flank>
        <right_flank>AATTTATTTGAGTTTAGGTGGAGTTCATGAAATTGGTCGAAGTTGGATTA</right_flank>
        <qual_score>35</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACTCTTTCAATTAGTCAGACGACGTTGGAGGGTCTAGGAATCTTTAAGAGAATATCCTATTCCTTTAGAAATTTAGTTTTTCTTCACTTCTGAATCTGTTAAACCAGCAAGAAAAAGAAAATTTAAAAATTTATTTGAGTTTAGGTGGAGTTCATGAAATTGGTCGAAGTTGGATTAAAGCGAAAAATAAAAATTGAAAATACCAAAAGTAGCCGAGTTCGATGTTTGGAGTGGGGAAGTGATTATCATCTCTGCGCATTAACCCATTTTCACTGATTCCATTGATTTTTGTTTTCTTCTTTCAGGTTTGCACTTCTCGGATCATTAACACTTAAAAATAGAAATATTGAATATTTGAATTACTGTATCTTTTGTTACCTGACTGAAATGCAGTTGGATTGACGAAGAAGCTGGTTTCTCATACACCTCGGCAACTGTGAAAAATTGAATATCACCCGGACGATGTCCTCCCGGTTGTGATAACATTCAAAAGGCATGTCCAACTTCATTTCAAACCGAAAAGCCACATATGGAATTTCCAGAAGCCGGGAACTGAATTTTTCCATTCCAAGATTTCCGAGGGTTTTGAACAACTCCAATATAATTTGTTTGATATTGGTATTCATT</canonical>
            <polymorphic>CGCAGTAAAAAGCAAATACACAGTGTGCAGCCAGCAAGGAAAATGACAGAAAAAGGAAGCGAAATGAGGGGTATGCGCGAAAACATGTTTAAAAAATGAAGCAGCCGGCCTACACCTGTTGACAATGTGTTCCAAAATAACGCTTCTTTGGGGGAACCATTTCGTTCGTTCAAGATGCCGTTGGATAAGTCATACTTGGGTAGATCTTAAACAAGGCTGTTGAAAAAGGCTAACAGCTCGGGCTATGGTTGCCGTGGAAAAACTTGTTAGTTGTTTTCAGAAAAATAACTTTGCCACAAAGAAGTTTTCAGATTTTCACTTGAAAGAGAAAAAATTCATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACTCTTTCAATTAGTCAGACGACGTTGGAGGGTCTAGGAATCTTTAAGAGAATATCCTATTCCTTTAGAAATTTAGTTTTTCTTCACTTCTGAATCTGTTAAACCAGCAAGAAAAAGAAAATTTAARAATTTATTTGAGTTTAGGTGGAGTTCATGAAATTGGTCGAAGTTGGATTAAAGCGAAAAATAAAAATTGAAAATACCAAAAGTAGCCGAGTTCGATGTTTGGAGTGGGGAAGTGATTATCATCTCTGCGCATTAACCCATTTTCACTGATTCCATTGATTTTTGTTTTCTTCTTTCAGGTTTGCACTTCTCGGATCATTAACACTTAAAAATAGAAATATTGAATATTTGAATTACTGTATCTTTTGTTACCTGACTGAAATGCAGTTGGATTGACGAAGAAGCTGGTTTCTCATACACCTCGGCAACTGTGAAAAATTGAATATCACCCGGACGATGTCCTCCCGGTTGTGATAACATTCAAAAGGCATGTCCAACTTCATTTCAAACCGAAAAGCCACATATGGAATTTCCAGAAGCCGGGAACTGAATTTTTCCATTCCAAGATTTCCGAGGGTTTTGAACAACTCCAATATAATTTGTTTGATATTGGTATTCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>406 332 110 72 50 22 8</canonical_bands>
                <polymorphic_bands>414 332 110 72 50 22</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>503 407 90</canonical_bands>
                <polymorphic_bands>910 90</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAGGAAGTCCGTTTGTGTAGA</pcr_primer_p1>
		<pcr_primer_p2>GCTACTTTTGGTATTTTCAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACTCTTTCAATTAGTCAGACGACGTTGGAGGGTCTAGGAATCTTTAAGAGAATATCCTATTCCTTTAGAAATTTAGTTTTTCTTCACTTCTGAATCTGTTAAACCAGCAAGAAAAAGAAAATTTAAAAATTTATTTGAGTTTAGGTGGAGTTCATGAAATTGGTCGAAGTTGGATTAAAGCGAAAAATAAAAATTGAAAATACCAAAAGTAGC</canonical_amplicon>
		<polymorphic_amplicon>ATAGGAAGTCCGTTTGTGTAGAAGCTGGCTGATAGTACTCTTTCAATTAGTCAGACGACGTTGGAGGGTCTAGGAATCTTTAAGAGAATATCCTATTCCTTTAGAAATTTAGTTTTTCTTCACTTCTGAATCTGTTAAACCAGCAAGAAAAAGAAAATTTAARAATTTATTTGAGTTTAGGTGGAGTTCATGAAATTGGTCGAAGTTGGATTAAAGCGAAAAATAAAAATTGAAAATACCAAAAGTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31547</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>557522</contig_pos>
        <strand>+</strand>
        <context>RTTTTTTWAA[A/G]CTATTTTWAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAA</left_flank>
        <right_flank>CTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTGAATTTGAAAGTGGGAATTTTATATAGTCTATATAAAAAATTATTAACAAGGAGTAATGAAACAAAAAAAAAATTGAAGTTGAAAAATGATTTTTCGAAATTTCGAAATCAAGAGGTCCTGGCCGGGCTCTCAAGACCTTCAAATTTAGTTTAAAAATTCTCAGGAAATTATTTTTTGGCAACACGGGTCTATCGGACAGGGCCGAGAGAATTTTTAAAAAGCTGGGCCCGTTTTTTTTTCAAAAAATTTTACAAGTACAAAAATTGTTTTTTCCAACGACCAAAGTTTCAAAGTGAAAGCCGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTTGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTTACTGCATTTTTTCTTGTTCCTCTCCTTTTTTCTAGAATTGTTTTTCTATTGACATTTTGCTATTTCTTCGCTCACCCACAGACATCAACGCTTTTTTATTTCCACTTTTTAAACTTCCCGGCTTCACAGACACAAATTGAATTTTTATTCCCTTTTATCTCCGATCCTTCTAATCAGTTACGTAAAATTTCCAGGCAATACATTATGAAGATGTGAACTTGGTGGAAAGGTTGCTGACGGCGCATAGTTCAAAACAACCAATGTCAACATCGCCGTCAATTGGTAATTCATAGGAAACTCGGGTGGA</canonical>
            <polymorphic>CCTTGAATTTGAAAGTGGGAATTTTATATAGTCTATATAAAAAATTATTAACAAGGAGTAATGAAACAAAAAAAAAATTGAAGTTGAAAAATGATTTTTCGAAATTTCGAAATCAAGAGGTCCTGGCCGGGCTCTCAAGACCTTCAAATTTAGTTTAAAAATTCTCAGGAAATTATTTTTTGGCAACACGGGTCTATCGGACAGGGCCGAGAGAATTTTTAAAAAGCTGGGCCCGTTTTTTTTTCAAAAAATTTTACAAGTACAAAAATTGTTTTTTCCAACGACCAAAGTTTCAAAGTGAAAGCCGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTTGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAARCTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTTACTGCATTTTTTCTTGTTCCTCTCCTTTTTTCTAGAATTGTTTTTCTATTGACATTTTGCTATTTCTTCGCTCACCCACAGACATCAACGCTTTTTTATTTCCACTTTTTAAACTTCCCGGCTTCACAGACACAAATTGAATTTTTATTCCCTTTTATCTCCGATCCTTCTAATCAGTTACGTAAAATTTCCAGGCAATACATTATGAAGATGTGAACTTGGTGGAAAGGTTGCTGACGGCGCATAGTTCAAAACAACCAATGTCAACATCGCCGTCAATTGGTAATTCATAGGAAACTCGGGTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTTCTTATTCCCGTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGACACAAGTCATCAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTT</canonical_amplicon>
		<polymorphic_amplicon>AATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAARCTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31548</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>557530</contig_pos>
        <strand>+</strand>
        <context>AARCTATTTT[A/T]ATCTTGAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTT</left_flank>
        <right_flank>ATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAAGTGGGAATTTTATATAGTCTATATAAAAAATTATTAACAAGGAGTAATGAAACAAAAAAAAAATTGAAGTTGAAAAATGATTTTTCGAAATTTCGAAATCAAGAGGTCCTGGCCGGGCTCTCAAGACCTTCAAATTTAGTTTAAAAATTCTCAGGAAATTATTTTTTGGCAACACGGGTCTATCGGACAGGGCCGAGAGAATTTTTAAAAAGCTGGGCCCGTTTTTTTTTCAAAAAATTTTACAAGTACAAAAATTGTTTTTTCCAACGACCAAAGTTTCAAAGTGAAAGCCGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTTGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTTACTGCATTTTTTCTTGTTCCTCTCCTTTTTTCTAGAATTGTTTTTCTATTGACATTTTGCTATTTCTTCGCTCACCCACAGACATCAACGCTTTTTTATTTCCACTTTTTAAACTTCCCGGCTTCACAGACACAAATTGAATTTTTATTCCCTTTTATCTCCGATCCTTCTAATCAGTTACGTAAAATTTCCAGGCAATACATTATGAAGATGTGAACTTGGTGGAAAGGTTGCTGACGGCGCATAGTTCAAAACAACCAATGTCAACATCGCCGTCAATTGGTAATTCATAGGAAACTCGGGTGGACGCCCCTG</canonical>
            <polymorphic>TTGAAAGTGGGAATTTTATATAGTCTATATAAAAAATTATTAACAAGGAGTAATGAAACAAAAAAAAAATTGAAGTTGAAAAATGATTTTTCGAAATTTCGAAATCAAGAGGTCCTGGCCGGGCTCTCAAGACCTTCAAATTTAGTTTAAAAATTCTCAGGAAATTATTTTTTGGCAACACGGGTCTATCGGACAGGGCCGAGAGAATTTTTAAAAAGCTGGGCCCGTTTTTTTTTCAAAAAATTTTACAAGTACAAAAATTGTTTTTTCCAACGACCAAAGTTTCAAAGTGAAAGCCGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTTGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTWATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTTACTGCATTTTTTCTTGTTCCTCTCCTTTTTTCTAGAATTGTTTTTCTATTGACATTTTGCTATTTCTTCGCTCACCCACAGACATCAACGCTTTTTTATTTCCACTTTTTAAACTTCCCGGCTTCACAGACACAAATTGAATTTTTATTCCCTTTTATCTCCGATCCTTCTAATCAGTTACGTAAAATTTCCAGGCAATACATTATGAAGATGTGAACTTGGTGGAAAGGTTGCTGACGGCGCATAGTTCAAAACAACCAATGTCAACATCGCCGTCAATTGGTAATTCATAGGAAACTCGGGTGGACGCCCCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTTCTTATTCCCGTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGACACAAGTCATCAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTT</canonical_amplicon>
		<polymorphic_amplicon>AATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTWATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31549</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>557544</contig_pos>
        <strand>+</strand>
        <context>TTGAAACTTC[G/T]CAACGCTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTC</left_flank>
        <right_flank>CAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATATAGTCTATATAAAAAATTATTAACAAGGAGTAATGAAACAAAAAAAAAATTGAAGTTGAAAAATGATTTTTCGAAATTTCGAAATCAAGAGGTCCTGGCCGGGCTCTCAAGACCTTCAAATTTAGTTTAAAAATTCTCAGGAAATTATTTTTTGGCAACACGGGTCTATCGGACAGGGCCGAGAGAATTTTTAAAAAGCTGGGCCCGTTTTTTTTTCAAAAAATTTTACAAGTACAAAAATTGTTTTTTCCAACGACCAAAGTTTCAAAGTGAAAGCCGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTTGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTTACTGCATTTTTTCTTGTTCCTCTCCTTTTTTCTAGAATTGTTTTTCTATTGACATTTTGCTATTTCTTCGCTCACCCACAGACATCAACGCTTTTTTATTTCCACTTTTTAAACTTCCCGGCTTCACAGACACAAATTGAATTTTTATTCCCTTTTATCTCCGATCCTTCTAATCAGTTACGTAAAATTTCCAGGCAATACATTATGAAGATGTGAACTTGGTGGAAAGGTTGCTGACGGCGCATAGTTCAAAACAACCAATGTCAACATCGCCGTCAATTGGTAATTCATAGGAAACTCGGGTGGACGCCCCTGAATTGATGAGCCCT</canonical>
            <polymorphic>TTTATATAGTCTATATAAAAAATTATTAACAAGGAGTAATGAAACAAAAAAAAAATTGAAGTTGAAAAATGATTTTTCGAAATTTCGAAATCAAGAGGTCCTGGCCGGGCTCTCAAGACCTTCAAATTTAGTTTAAAAATTCTCAGGAAATTATTTTTTGGCAACACGGGTCTATCGGACAGGGCCGAGAGAATTTTTAAAAAGCTGGGCCCGTTTTTTTTTCAAAAAATTTTACAAGTACAAAAATTGTTTTTTCCAACGACCAAAGTTTCAAAGTGAAAGCCGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTTGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCKCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTTACTGCATTTTTTCTTGTTCCTCTCCTTTTTTCTAGAATTGTTTTTCTATTGACATTTTGCTATTTCTTCGCTCACCCACAGACATCAACGCTTTTTTATTTCCACTTTTTAAACTTCCCGGCTTCACAGACACAAATTGAATTTTTATTCCCTTTTATCTCCGATCCTTCTAATCAGTTACGTAAAATTTCCAGGCAATACATTATGAAGATGTGAACTTGGTGGAAAGGTTGCTGACGGCGCATAGTTCAAAACAACCAATGTCAACATCGCCGTCAATTGGTAATTCATAGGAAACTCGGGTGGACGCCCCTGAATTGATGAGCCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTTCTTATTCCCGTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGACACAAGTCATCAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTT</canonical_amplicon>
		<polymorphic_amplicon>AATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCKCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31550</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>557613</contig_pos>
        <strand>+</strand>
        <context>TCTTCTGAAT[G/T]AAAAAACGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAAT</left_flank>
        <right_flank>AAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATTTTTCGAAATTTCGAAATCAAGAGGTCCTGGCCGGGCTCTCAAGACCTTCAAATTTAGTTTAAAAATTCTCAGGAAATTATTTTTTGGCAACACGGGTCTATCGGACAGGGCCGAGAGAATTTTTAAAAAGCTGGGCCCGTTTTTTTTTCAAAAAATTTTACAAGTACAAAAATTGTTTTTTCCAACGACCAAAGTTTCAAAGTGAAAGCCGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTTGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTTACTGCATTTTTTCTTGTTCCTCTCCTTTTTTCTAGAATTGTTTTTCTATTGACATTTTGCTATTTCTTCGCTCACCCACAGACATCAACGCTTTTTTATTTCCACTTTTTAAACTTCCCGGCTTCACAGACACAAATTGAATTTTTATTCCCTTTTATCTCCGATCCTTCTAATCAGTTACGTAAAATTTCCAGGCAATACATTATGAAGATGTGAACTTGGTGGAAAGGTTGCTGACGGCGCATAGTTCAAAACAACCAATGTCAACATCGCCGTCAATTGGTAATTCATAGGAAACTCGGGTGGACGCCCCTGAATTGATGAGCCCTCGGCACGAGCCTTCTCTATTTCTCCCCTATCTTTCAGGTAGCACAAACACACTGACCGATCTCGCGCAA</canonical>
            <polymorphic>TGATTTTTCGAAATTTCGAAATCAAGAGGTCCTGGCCGGGCTCTCAAGACCTTCAAATTTAGTTTAAAAATTCTCAGGAAATTATTTTTTGGCAACACGGGTCTATCGGACAGGGCCGAGAGAATTTTTAAAAAGCTGGGCCCGTTTTTTTTTCAAAAAATTTTACAAGTACAAAAATTGTTTTTTCCAACGACCAAAGTTTCAAAGTGAAAGCCGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTTGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATKAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTTACTGCATTTTTTCTTGTTCCTCTCCTTTTTTCTAGAATTGTTTTTCTATTGACATTTTGCTATTTCTTCGCTCACCCACAGACATCAACGCTTTTTTATTTCCACTTTTTAAACTTCCCGGCTTCACAGACACAAATTGAATTTTTATTCCCTTTTATCTCCGATCCTTCTAATCAGTTACGTAAAATTTCCAGGCAATACATTATGAAGATGTGAACTTGGTGGAAAGGTTGCTGACGGCGCATAGTTCAAAACAACCAATGTCAACATCGCCGTCAATTGGTAATTCATAGGAAACTCGGGTGGACGCCCCTGAATTGATGAGCCCTCGGCACGAGCCTTCTCTATTTCTCCCCTATCTTTCAGGTAGCACAAACACACTGACCGATCTCGCGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTTCTTATTCCCGTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGACACAAGTCATCAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTT</canonical_amplicon>
		<polymorphic_amplicon>AATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATKAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31551</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>557755</contig_pos>
        <strand>+</strand>
        <context>TTCTAGAATT[G/T]TTTTTCTATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTGTCCTTTTACTGCATTTTTTCTTGTTCCTCTCCTTTTTTCTAGAATT</left_flank>
        <right_flank>TTTTTCTATTGACATTTTGCTATTTCTTCGCTCACCCACAGACATCAACG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTTTTTTTTTCAAAAAATTTTACAAGTACAAAAATTGTTTTTTCCAACGACCAAAGTTTCAAAGTGAAAGCCGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTTGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTTACTGCATTTTTTCTTGTTCCTCTCCTTTTTTCTAGAATTGTTTTTCTATTGACATTTTGCTATTTCTTCGCTCACCCACAGACATCAACGCTTTTTTATTTCCACTTTTTAAACTTCCCGGCTTCACAGACACAAATTGAATTTTTATTCCCTTTTATCTCCGATCCTTCTAATCAGTTACGTAAAATTTCCAGGCAATACATTATGAAGATGTGAACTTGGTGGAAAGGTTGCTGACGGCGCATAGTTCAAAACAACCAATGTCAACATCGCCGTCAATTGGTAATTCATAGGAAACTCGGGTGGACGCCCCTGAATTGATGAGCCCTCGGCACGAGCCTTCTCTATTTCTCCCCTATCTTTCAGGTAGCACAAACACACTGACCGATCTCGCGCAACGAAGACATGGCGCGGGGGCGCATCGCCGTTCCAACGCCAGCAGTACGGTGTCGACGCATTCAGGAGGAAGGTGGGGGCTTTGAATGTCATGTAGACGAGATAGGGGGTGACAAGTTGCATGATTTAAACATGAGCAATCTA</canonical>
            <polymorphic>CGTTTTTTTTTCAAAAAATTTTACAAGTACAAAAATTGTTTTTTCCAACGACCAAAGTTTCAAAGTGAAAGCCGAAACTTGAGTATTATTTTCGTATTTAACAACATTTTTTTGTAATAATAAAAAACGAGGGAATTTGCTTTAAATGGATAGAACTTAAATTTCTATGCTAAATTTGGCGTTTTTGACACTTTTTAGTGTCAAATGGCTAATTTTTCTTATTCCCGTAAAATTTTTTTTCGATTAGTAAAAATTGATTTTTTAAAACTATTTTTATCTTGAAACTTCTCAACGCTGAAGGATCCCATGGACGTTCTATACAAAAAAACTCTAGGAATGCCCTTTTGTCTTCTGAATAAAAAAACGTTTCAACAAAAAAAGAGTCACTCGTGACAAATGAACTTTTTCGTCTCGTCCGAAATGTTCGTTAAAGTTTTTACTTGATGACTTGTGTCCTTTTACTGCATTTTTTCTTGTTCCTCTCCTTTTTTCTAGAATTKTTTTTCTATTGACATTTTGCTATTTCTTCGCTCACCCACAGACATCAACGCTTTTTTATTTCCACTTTTTAAACTTCCCGGCTTCACAGACACAAATTGAATTTTTATTCCCTTTTATCTCCGATCCTTCTAATCAGTTACGTAAAATTTCCAGGCAATACATTATGAAGATGTGAACTTGGTGGAAAGGTTGCTGACGGCGCATAGTTCAAAACAACCAATGTCAACATCGCCGTCAATTGGTAATTCATAGGAAACTCGGGTGGACGCCCCTGAATTGATGAGCCCTCGGCACGAGCCTTCTCTATTTCTCCCCTATCTTTCAGGTAGCACAAACACACTGACCGATCTCGCGCAACGAAGACATGGCGCGGGGGCGCATCGCCGTTCCAACGCCAGCAGTACGGTGTCGACGCATTCAGGAGGAAGGTGGGGGCTTTGAATGTCATGTAGACGAGATAGGGGGTGACAAGTTGCATGATTTAAACATGAGCAATCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTACTTGATGACTTGTGTCCT</pcr_primer_p1>
		<pcr_primer_p2>CACCAAGTTCACATCTTCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTACTTGATGACTTGTGTCCTTTTACTGCATTTTTTCTTGTTCCTCTCCTTTTTTCTAGAATTGTTTTTCTATTGACATTTTGCTATTTCTTCGCTCACCCACAGACATCAACGCTTTTTTATTTCCACTTTTTAAACTTCCCGGCTTCACAGACACAAATTGAATTTTTATTCCCTTTTATCTCCGATCCTTCTAATCAGTTACGTAAAATTTCCAGGCAATACATTATGAAGATGTGAACTTGGTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTACTTGATGACTTGTGTCCTTTTACTGCATTTTTTCTTGTTCCTCTCCTTTTTTCTAGAATTKTTTTTCTATTGACATTTTGCTATTTCTTCGCTCACCCACAGACATCAACGCTTTTTTATTTCCACTTTTTAAACTTCCCGGCTTCACAGACACAAATTGAATTTTTATTCCCTTTTATCTCCGATCCTTCTAATCAGTTACGTAAAATTTCCAGGCAATACATTATGAAGATGTGAACTTGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31552</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>569861</contig_pos>
        <strand></strand>
        <context>gtgtccttca[A/G]atgacggsat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCAGTTATTTTCCAAAGTAAAAAAGTAGTAAAAACAGGTGTCCTTCA</left_flank>
        <right_flank>ATGACGGCATGTTACTCAAAAACTAGGAATTTTCGAAAAATTCTAAGAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACTTTCTACATTCTCTGGAGGAACCAGCATCGCTTCTGACAATTCTGGACCATTCCTCTTCAGCTTTGTGTTGAGAAAACGAGCATCAACCATTGGAACACGTATTCCGATTCCCCGAAGAGCCCTATCAAGATCTTCCGGTGATAGTTTGAGAGTTCCTGATAGAGAGAGCCCTCTTCATCTGGCAAGTATGACAGAAATGAATCCAGATTTTCAATGTGTCAGACAGCTGATTCTCAACTTGCTCAATGTGTACAACAAGAGGTAAAAACGGTCAATAACATATACAGAAACATGTTTTTCTTTTGATTCTTGGCCATTTTTGACCATTTTCAGGAGCCTCGATTTCGACTATCAAGTTCTTTATCACTTTGAAAATTGTGGAGTGTGTGAAACAAACCTAATTTGAAAAATTTACATTTGCAGAATGATTTTGAAATCTCTAGTTTTTCAGTTATTTTCCAAAGTAAAAAAGTAGTAAAAACAGGTGTCCTTCAAATGACGGCATGTTACTCAAAAACTAGGAATTTTCGAAAAATTCTAAGAATGCAGAGTTTCAATTTTGGTCTGTTTTGCACCCTCTAAAATTTTCAAAGTGAAGGAAAACTTGACTGACGAGCTCCAAACCACTGAAAATGTTCAAAAGGGCCAAAAATCAACTGTGAATTTTGTTTTTATAGTCAAAAATTTTCAAAAATGAATTTTTTAGAAATAAAAATGTCGTGTCCTCCATGAACGAGTGCACTGATGTCCTTCGCGCAATCCTAAACTCTCCTCAACATCCGACTGTCAAAAACTGGTGCGCTGAAATTATCCACGTCGTCAATACTCATGTAGAAGAAGAAGAGCCAACACGAGCAGAGAATAATGAGCAAATTAATGACGAGTATTTGGAGGTAAGTGATTTTCCAGAAGATTCTTTTTGAGAGACAACCACGCGCTTCATATGTTTTCATTTCTTTGTTTCTTTTCTTTTTTTGGTTTTATGATTCATATAT</canonical>
            <polymorphic>CGACTTTCTACATTCTCTGGAGGAACCAGCATCGCTTCTGACAATTCTGGACCATTCCTCTTCAGCTTTGTGTTGAGAAAACGAGCATCAACCATTGGAACACGTATTCCGATTCCCCGAAGAGCCCTATCAAGATCTTCCGGTGATAGTTTGAGAGTTCCTGATAGAGAGAGCCCTCTTCATCTGGCAAGTATGACAGAAATGAATCCAGATTTTCAATGTGTCAGACAGCTGATTCTCAACTTGCTCAATGTGTACAACAAGAGGTAAAAACGGTCAATAACATATACAGAAACATGTTTTTCTTTTGATTCTTGGCCATTTTTGACCATTTTCAGGAGCCTCGATTTCGACTATCAAGTTCTTTATCACTTTGAAAATTGTGGAGTGTGTGAAACAAACCTAATTTGAAAAATTTACATTTGCAGAATGATTTTGAAATCTCTAGTTTTTCAGTTATTTTCCAAAGTAAAAAAGTAGTAAAAACAGGTGTCCTTCARATGACGGCATGTTACTCAAAAACTAGGAATTTTCGAAAAATTCTAAGAATGCAGAGTTTCAATTTTGGTCTGTTTTGCACCCTCTAAAATTTTCAAAGTGAAGGAAAACTTGACTGACGAGCTCCAAACCACTGAAAATGTTCAAAAGGGCCAAAAATCAACTGTGAATTTTGTTTTTATAGTCAAAAATTTTCAAAAATGAATTTTTTAGAAATAAAAATGTCGTGTCCTCCATGAACGAGTGCACTGATGTCCTTCGCGCAATCCTAAACTCTCCTCAACATCCGACTGTCAAAAACTGGTGCGCTGAAATTATCCACGTCGTCAATACTCATGTAGAAGAAGAAGAGCCAACACGAGCAGAGAATAATGAGCAAATTAATGACGAGTATTTGGAGGTAAGTGATTTTCCAGAAGATTCTTTTTGAGAGACAACCACGCGCTTCATATGTTTTCATTTCTTTGTTTCTTTTCTTTTTTTGGTTTTATGATTCATATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAATGTGTACAACAAGAGGTAA</pcr_primer_p1>
		<pcr_primer_p2>GAGGACACGACATTTTTATTTC</pcr_primer_p2>
		<pcr_amplicon_size>485</pcr_amplicon_size>
		<canonical_amplicon>TCAATGTGTACAACAAGAGGTAAAAACGGTCAATAACATATACAGAAACATGTTTTTCTTTTGATTCTTGGCCATTTTTGACCATTTTCAGGAGCCTCGATTTCGACTATCAAGTTCTTTATCACTTTGAAAATTGTGGAGTGTGTGAAACAAACCTAATTTGAAAAATTTACATTTGCAGAATGATTTTGAAATCTCTAGTTTTTCAGTTATTTTCCAAAGTAAAAAAGTAGTAAAAACAGGTGTCCTTCAAATGACGGCATGTTACTCAAAAACTAGGAATTTTCGAAAAATTCTAAGAATGCAGAGTTTCAATTTTGGTCTGTTTTGCACCCTCTAAAATTTTCAAAGTGAAGGAAAACTTGACTGACGAGCTCCAAACCACTGAAAATGTTCAAAAGGGCCAAAAATCAACTGTGAATTTTGTTTTTATAGTCAAAAATTTTCAAAAATGAATTTTTTAGAAATAAAAATGTCGTGTCCTC</canonical_amplicon>
		<polymorphic_amplicon>TCAATGTGTACAACAAGAGGTAAAAACGGTCAATAACATATACAGAAACATGTTTTTCTTTTGATTCTTGGCCATTTTTGACCATTTTCAGGAGCCTCGATTTCGACTATCAAGTTCTTTATCACTTTGAAAATTGTGGAGTGTGTGAAACAAACCTAATTTGAAAAATTTACATTTGCAGAATGATTTTGAAATCTCTAGTTTTTCAGTTATTTTCCAAAGTAAAAAAGTAGTAAAAACAGGTGTCCTTCARATGACGGCATGTTACTCAAAAACTAGGAATTTTCGAAAAATTCTAAGAATGCAGAGTTTCAATTTTGGTCTGTTTTGCACCCTCTAAAATTTTCAAAGTGAAGGAAAACTTGACTGACGAGCTCCAAACCACTGAAAATGTTCAAAAGGGCCAAAAATCAACTGTGAATTTTGTTTTTATAGTCAAAAATTTTCAAAAATGAATTTTTTAGAAATAAAAATGTCGTGTCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31553</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>569869</contig_pos>
        <strand></strand>
        <context>caratgacgg[C/G]atgttactca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TATTTTCCAAAGTAAAAAAGTAGTAAAAACAGGTGTCCTTCAAATGACGG</left_flank>
        <right_flank>ATGTTACTCAAAAACTAGGAATTTTCGAAAAATTCTAAGAATGCAGAGTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACATTCTCTGGAGGAACCAGCATCGCTTCTGACAATTCTGGACCATTCCTCTTCAGCTTTGTGTTGAGAAAACGAGCATCAACCATTGGAACACGTATTCCGATTCCCCGAAGAGCCCTATCAAGATCTTCCGGTGATAGTTTGAGAGTTCCTGATAGAGAGAGCCCTCTTCATCTGGCAAGTATGACAGAAATGAATCCAGATTTTCAATGTGTCAGACAGCTGATTCTCAACTTGCTCAATGTGTACAACAAGAGGTAAAAACGGTCAATAACATATACAGAAACATGTTTTTCTTTTGATTCTTGGCCATTTTTGACCATTTTCAGGAGCCTCGATTTCGACTATCAAGTTCTTTATCACTTTGAAAATTGTGGAGTGTGTGAAACAAACCTAATTTGAAAAATTTACATTTGCAGAATGATTTTGAAATCTCTAGTTTTTCAGTTATTTTCCAAAGTAAAAAAGTAGTAAAAACAGGTGTCCTTCAAATGACGGCATGTTACTCAAAAACTAGGAATTTTCGAAAAATTCTAAGAATGCAGAGTTTCAATTTTGGTCTGTTTTGCACCCTCTAAAATTTTCAAAGTGAAGGAAAACTTGACTGACGAGCTCCAAACCACTGAAAATGTTCAAAAGGGCCAAAAATCAACTGTGAATTTTGTTTTTATAGTCAAAAATTTTCAAAAATGAATTTTTTAGAAATAAAAATGTCGTGTCCTCCATGAACGAGTGCACTGATGTCCTTCGCGCAATCCTAAACTCTCCTCAACATCCGACTGTCAAAAACTGGTGCGCTGAAATTATCCACGTCGTCAATACTCATGTAGAAGAAGAAGAGCCAACACGAGCAGAGAATAATGAGCAAATTAATGACGAGTATTTGGAGGTAAGTGATTTTCCAGAAGATTCTTTTTGAGAGACAACCACGCGCTTCATATGTTTTCATTTCTTTGTTTCTTTTCTTTTTTTGGTTTTATGATTCATATATTTTTTCAA</canonical>
            <polymorphic>TACATTCTCTGGAGGAACCAGCATCGCTTCTGACAATTCTGGACCATTCCTCTTCAGCTTTGTGTTGAGAAAACGAGCATCAACCATTGGAACACGTATTCCGATTCCCCGAAGAGCCCTATCAAGATCTTCCGGTGATAGTTTGAGAGTTCCTGATAGAGAGAGCCCTCTTCATCTGGCAAGTATGACAGAAATGAATCCAGATTTTCAATGTGTCAGACAGCTGATTCTCAACTTGCTCAATGTGTACAACAAGAGGTAAAAACGGTCAATAACATATACAGAAACATGTTTTTCTTTTGATTCTTGGCCATTTTTGACCATTTTCAGGAGCCTCGATTTCGACTATCAAGTTCTTTATCACTTTGAAAATTGTGGAGTGTGTGAAACAAACCTAATTTGAAAAATTTACATTTGCAGAATGATTTTGAAATCTCTAGTTTTTCAGTTATTTTCCAAAGTAAAAAAGTAGTAAAAACAGGTGTCCTTCAAATGACGGSATGTTACTCAAAAACTAGGAATTTTCGAAAAATTCTAAGAATGCAGAGTTTCAATTTTGGTCTGTTTTGCACCCTCTAAAATTTTCAAAGTGAAGGAAAACTTGACTGACGAGCTCCAAACCACTGAAAATGTTCAAAAGGGCCAAAAATCAACTGTGAATTTTGTTTTTATAGTCAAAAATTTTCAAAAATGAATTTTTTAGAAATAAAAATGTCGTGTCCTCCATGAACGAGTGCACTGATGTCCTTCGCGCAATCCTAAACTCTCCTCAACATCCGACTGTCAAAAACTGGTGCGCTGAAATTATCCACGTCGTCAATACTCATGTAGAAGAAGAAGAGCCAACACGAGCAGAGAATAATGAGCAAATTAATGACGAGTATTTGGAGGTAAGTGATTTTCCAGAAGATTCTTTTTGAGAGACAACCACGCGCTTCATATGTTTTCATTTCTTTGTTTCTTTTCTTTTTTTGGTTTTATGATTCATATATTTTTTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>497 291 212</canonical_bands>
                <polymorphic_bands>709 291</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>288 225 212 175 100</canonical_bands>
                <polymorphic_bands>437 288 175 100</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAATGTGTACAACAAGAGGTAA</pcr_primer_p1>
		<pcr_primer_p2>GAGGACACGACATTTTTATTTC</pcr_primer_p2>
		<pcr_amplicon_size>485</pcr_amplicon_size>
		<canonical_amplicon>TCAATGTGTACAACAAGAGGTAAAAACGGTCAATAACATATACAGAAACATGTTTTTCTTTTGATTCTTGGCCATTTTTGACCATTTTCAGGAGCCTCGATTTCGACTATCAAGTTCTTTATCACTTTGAAAATTGTGGAGTGTGTGAAACAAACCTAATTTGAAAAATTTACATTTGCAGAATGATTTTGAAATCTCTAGTTTTTCAGTTATTTTCCAAAGTAAAAAAGTAGTAAAAACAGGTGTCCTTCAAATGACGGCATGTTACTCAAAAACTAGGAATTTTCGAAAAATTCTAAGAATGCAGAGTTTCAATTTTGGTCTGTTTTGCACCCTCTAAAATTTTCAAAGTGAAGGAAAACTTGACTGACGAGCTCCAAACCACTGAAAATGTTCAAAAGGGCCAAAAATCAACTGTGAATTTTGTTTTTATAGTCAAAAATTTTCAAAAATGAATTTTTTAGAAATAAAAATGTCGTGTCCTC</canonical_amplicon>
		<polymorphic_amplicon>TCAATGTGTACAACAAGAGGTAAAAACGGTCAATAACATATACAGAAACATGTTTTTCTTTTGATTCTTGGCCATTTTTGACCATTTTCAGGAGCCTCGATTTCGACTATCAAGTTCTTTATCACTTTGAAAATTGTGGAGTGTGTGAAACAAACCTAATTTGAAAAATTTACATTTGCAGAATGATTTTGAAATCTCTAGTTTTTCAGTTATTTTCCAAAGTAAAAAAGTAGTAAAAACAGGTGTCCTTCAAATGACGGSATGTTACTCAAAAACTAGGAATTTTCGAAAAATTCTAAGAATGCAGAGTTTCAATTTTGGTCTGTTTTGCACCCTCTAAAATTTTCAAAGTGAAGGAAAACTTGACTGACGAGCTCCAAACCACTGAAAATGTTCAAAAGGGCCAAAAATCAACTGTGAATTTTGTTTTTATAGTCAAAAATTTTCAAAAATGAATTTTTTAGAAATAAAAATGTCGTGTCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31554</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>569908</contig_pos>
        <strand></strand>
        <context>aaaattctaa[G/A]aatgcagagt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCAAATGACGGCATGTTACTCAAAAACTAGGAATTTTCGAAAAATTCTAA</left_flank>
        <right_flank>AATGCAGAGTTTCAATTTTGGTCTGTTTTGCACCCTCTAAAATTTTCAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGACCATTCCTCTTCAGCTTTGTGTTGAGAAAACGAGCATCAACCATTGGAACACGTATTCCGATTCCCCGAAGAGCCCTATCAAGATCTTCCGGTGATAGTTTGAGAGTTCCTGATAGAGAGAGCCCTCTTCATCTGGCAAGTATGACAGAAATGAATCCAGATTTTCAATGTGTCAGACAGCTGATTCTCAACTTGCTCAATGTGTACAACAAGAGGTAAAAACGGTCAATAACATATACAGAAACATGTTTTTCTTTTGATTCTTGGCCATTTTTGACCATTTTCAGGAGCCTCGATTTCGACTATCAAGTTCTTTATCACTTTGAAAATTGTGGAGTGTGTGAAACAAACCTAATTTGAAAAATTTACATTTGCAGAATGATTTTGAAATCTCTAGTTTTTCAGTTATTTTCCAAAGTAAAAAAGTAGTAAAAACAGGTGTCCTTCAAATGACGGCATGTTACTCAAAAACTAGGAATTTTCGAAAAATTCTAAGAATGCAGAGTTTCAATTTTGGTCTGTTTTGCACCCTCTAAAATTTTCAAAGTGAAGGAAAACTTGACTGACGAGCTCCAAACCACTGAAAATGTTCAAAAGGGCCAAAAATCAACTGTGAATTTTGTTTTTATAGTCAAAAATTTTCAAAAATGAATTTTTTAGAAATAAAAATGTCGTGTCCTCCATGAACGAGTGCACTGATGTCCTTCGCGCAATCCTAAACTCTCCTCAACATCCGACTGTCAAAAACTGGTGCGCTGAAATTATCCACGTCGTCAATACTCATGTAGAAGAAGAAGAGCCAACACGAGCAGAGAATAATGAGCAAATTAATGACGAGTATTTGGAGGTAAGTGATTTTCCAGAAGATTCTTTTTGAGAGACAACCACGCGCTTCATATGTTTTCATTTCTTTGTTTCTTTTCTTTTTTTGGTTTTATGATTCATATATTTTTTCAACCGTTGTCTTCTTTTTACTGTTCTTTTTACTGATTTCTT</canonical>
            <polymorphic>TGGACCATTCCTCTTCAGCTTTGTGTTGAGAAAACGAGCATCAACCATTGGAACACGTATTCCGATTCCCCGAAGAGCCCTATCAAGATCTTCCGGTGATAGTTTGAGAGTTCCTGATAGAGAGAGCCCTCTTCATCTGGCAAGTATGACAGAAATGAATCCAGATTTTCAATGTGTCAGACAGCTGATTCTCAACTTGCTCAATGTGTACAACAAGAGGTAAAAACGGTCAATAACATATACAGAAACATGTTTTTCTTTTGATTCTTGGCCATTTTTGACCATTTTCAGGAGCCTCGATTTCGACTATCAAGTTCTTTATCACTTTGAAAATTGTGGAGTGTGTGAAACAAACCTAATTTGAAAAATTTACATTTGCAGAATGATTTTGAAATCTCTAGTTTTTCAGTTATTTTCCAAAGTAAAAAAGTAGTAAAAACAGGTGTCCTTCAAATGACGGCATGTTACTCAAAAACTAGGAATTTTCGAAAAATTCTAARAATGCAGAGTTTCAATTTTGGTCTGTTTTGCACCCTCTAAAATTTTCAAAGTGAAGGAAAACTTGACTGACGAGCTCCAAACCACTGAAAATGTTCAAAAGGGCCAAAAATCAACTGTGAATTTTGTTTTTATAGTCAAAAATTTTCAAAAATGAATTTTTTAGAAATAAAAATGTCGTGTCCTCCATGAACGAGTGCACTGATGTCCTTCGCGCAATCCTAAACTCTCCTCAACATCCGACTGTCAAAAACTGGTGCGCTGAAATTATCCACGTCGTCAATACTCATGTAGAAGAAGAAGAGCCAACACGAGCAGAGAATAATGAGCAAATTAATGACGAGTATTTGGAGGTAAGTGATTTTCCAGAAGATTCTTTTTGAGAGACAACCACGCGCTTCATATGTTTTCATTTCTTTGTTTCTTTTCTTTTTTTGGTTTTATGATTCATATATTTTTTCAACCGTTGTCTTCTTTTTACTGTTCTTTTTACTGATTTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAATGTGTACAACAAGAGGTAA</pcr_primer_p1>
		<pcr_primer_p2>GAGGACACGACATTTTTATTTC</pcr_primer_p2>
		<pcr_amplicon_size>485</pcr_amplicon_size>
		<canonical_amplicon>TCAATGTGTACAACAAGAGGTAAAAACGGTCAATAACATATACAGAAACATGTTTTTCTTTTGATTCTTGGCCATTTTTGACCATTTTCAGGAGCCTCGATTTCGACTATCAAGTTCTTTATCACTTTGAAAATTGTGGAGTGTGTGAAACAAACCTAATTTGAAAAATTTACATTTGCAGAATGATTTTGAAATCTCTAGTTTTTCAGTTATTTTCCAAAGTAAAAAAGTAGTAAAAACAGGTGTCCTTCAAATGACGGCATGTTACTCAAAAACTAGGAATTTTCGAAAAATTCTAAGAATGCAGAGTTTCAATTTTGGTCTGTTTTGCACCCTCTAAAATTTTCAAAGTGAAGGAAAACTTGACTGACGAGCTCCAAACCACTGAAAATGTTCAAAAGGGCCAAAAATCAACTGTGAATTTTGTTTTTATAGTCAAAAATTTTCAAAAATGAATTTTTTAGAAATAAAAATGTCGTGTCCTC</canonical_amplicon>
		<polymorphic_amplicon>TCAATGTGTACAACAAGAGGTAAAAACGGTCAATAACATATACAGAAACATGTTTTTCTTTTGATTCTTGGCCATTTTTGACCATTTTCAGGAGCCTCGATTTCGACTATCAAGTTCTTTATCACTTTGAAAATTGTGGAGTGTGTGAAACAAACCTAATTTGAAAAATTTACATTTGCAGAATGATTTTGAAATCTCTAGTTTTTCAGTTATTTTCCAAAGTAAAAAAGTAGTAAAAACAGGTGTCCTTCAAATGACGGCATGTTACTCAAAAACTAGGAATTTTCGAAAAATTCTAARAATGCAGAGTTTCAATTTTGGTCTGTTTTGCACCCTCTAAAATTTTCAAAGTGAAGGAAAACTTGACTGACGAGCTCCAAACCACTGAAAATGTTCAAAAGGGCCAAAAATCAACTGTGAATTTTGTTTTTATAGTCAAAAATTTTCAAAAATGAATTTTTTAGAAATAAAAATGTCGTGTCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31555</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>569988</contig_pos>
        <strand></strand>
        <context>acgagctcca[A/G]accactgaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCACCCTCTAAAATTTTCAAAGTGAAGGAAAACTTGACTGACGAGCTCCA</left_flank>
        <right_flank>ACCACTGAAAATGTTCAAAAGGGCCAAAAATCAACTGTGAATTTTGTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCAAGATCTTCCGGTGATAGTTTGAGAGTTCCTGATAGAGAGAGCCCTCTTCATCTGGCAAGTATGACAGAAATGAATCCAGATTTTCAATGTGTCAGACAGCTGATTCTCAACTTGCTCAATGTGTACAACAAGAGGTAAAAACGGTCAATAACATATACAGAAACATGTTTTTCTTTTGATTCTTGGCCATTTTTGACCATTTTCAGGAGCCTCGATTTCGACTATCAAGTTCTTTATCACTTTGAAAATTGTGGAGTGTGTGAAACAAACCTAATTTGAAAAATTTACATTTGCAGAATGATTTTGAAATCTCTAGTTTTTCAGTTATTTTCCAAAGTAAAAAAGTAGTAAAAACAGGTGTCCTTCAAATGACGGCATGTTACTCAAAAACTAGGAATTTTCGAAAAATTCTAAGAATGCAGAGTTTCAATTTTGGTCTGTTTTGCACCCTCTAAAATTTTCAAAGTGAAGGAAAACTTGACTGACGAGCTCCAAACCACTGAAAATGTTCAAAAGGGCCAAAAATCAACTGTGAATTTTGTTTTTATAGTCAAAAATTTTCAAAAATGAATTTTTTAGAAATAAAAATGTCGTGTCCTCCATGAACGAGTGCACTGATGTCCTTCGCGCAATCCTAAACTCTCCTCAACATCCGACTGTCAAAAACTGGTGCGCTGAAATTATCCACGTCGTCAATACTCATGTAGAAGAAGAAGAGCCAACACGAGCAGAGAATAATGAGCAAATTAATGACGAGTATTTGGAGGTAAGTGATTTTCCAGAAGATTCTTTTTGAGAGACAACCACGCGCTTCATATGTTTTCATTTCTTTGTTTCTTTTCTTTTTTTGGTTTTATGATTCATATATTTTTTCAACCGTTGTCTTCTTTTTACTGTTCTTTTTACTGATTTCTTTTCCTACTTCTTCCATTTCTGCTTCCACCGCTCCCCGAACCCAAATGAATCGAAAATCAAAGGTTCGAATTTCAAATCGT</canonical>
            <polymorphic>TATCAAGATCTTCCGGTGATAGTTTGAGAGTTCCTGATAGAGAGAGCCCTCTTCATCTGGCAAGTATGACAGAAATGAATCCAGATTTTCAATGTGTCAGACAGCTGATTCTCAACTTGCTCAATGTGTACAACAAGAGGTAAAAACGGTCAATAACATATACAGAAACATGTTTTTCTTTTGATTCTTGGCCATTTTTGACCATTTTCAGGAGCCTCGATTTCGACTATCAAGTTCTTTATCACTTTGAAAATTGTGGAGTGTGTGAAACAAACCTAATTTGAAAAATTTACATTTGCAGAATGATTTTGAAATCTCTAGTTTTTCAGTTATTTTCCAAAGTAAAAAAGTAGTAAAAACAGGTGTCCTTCAAATGACGGCATGTTACTCAAAAACTAGGAATTTTCGAAAAATTCTAAGAATGCAGAGTTTCAATTTTGGTCTGTTTTGCACCCTCTAAAATTTTCAAAGTGAAGGAAAACTTGACTGACGAGCTCCARACCACTGAAAATGTTCAAAAGGGCCAAAAATCAACTGTGAATTTTGTTTTTATAGTCAAAAATTTTCAAAAATGAATTTTTTAGAAATAAAAATGTCGTGTCCTCCATGAACGAGTGCACTGATGTCCTTCGCGCAATCCTAAACTCTCCTCAACATCCGACTGTCAAAAACTGGTGCGCTGAAATTATCCACGTCGTCAATACTCATGTAGAAGAAGAAGAGCCAACACGAGCAGAGAATAATGAGCAAATTAATGACGAGTATTTGGAGGTAAGTGATTTTCCAGAAGATTCTTTTTGAGAGACAACCACGCGCTTCATATGTTTTCATTTCTTTGTTTCTTTTCTTTTTTTGGTTTTATGATTCATATATTTTTTCAACCGTTGTCTTCTTTTTACTGTTCTTTTTACTGATTTCTTTTCCTACTTCTTCCATTTCTGCTTCCACCGCTCCCCGAACCCAAATGAATCGAAAATCAAAGGTTCGAATTTCAAATCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAATGTGTACAACAAGAGGTAA</pcr_primer_p1>
		<pcr_primer_p2>GAGGACACGACATTTTTATTTC</pcr_primer_p2>
		<pcr_amplicon_size>485</pcr_amplicon_size>
		<canonical_amplicon>TCAATGTGTACAACAAGAGGTAAAAACGGTCAATAACATATACAGAAACATGTTTTTCTTTTGATTCTTGGCCATTTTTGACCATTTTCAGGAGCCTCGATTTCGACTATCAAGTTCTTTATCACTTTGAAAATTGTGGAGTGTGTGAAACAAACCTAATTTGAAAAATTTACATTTGCAGAATGATTTTGAAATCTCTAGTTTTTCAGTTATTTTCCAAAGTAAAAAAGTAGTAAAAACAGGTGTCCTTCAAATGACGGCATGTTACTCAAAAACTAGGAATTTTCGAAAAATTCTAAGAATGCAGAGTTTCAATTTTGGTCTGTTTTGCACCCTCTAAAATTTTCAAAGTGAAGGAAAACTTGACTGACGAGCTCCAAACCACTGAAAATGTTCAAAAGGGCCAAAAATCAACTGTGAATTTTGTTTTTATAGTCAAAAATTTTCAAAAATGAATTTTTTAGAAATAAAAATGTCGTGTCCTC</canonical_amplicon>
		<polymorphic_amplicon>TCAATGTGTACAACAAGAGGTAAAAACGGTCAATAACATATACAGAAACATGTTTTTCTTTTGATTCTTGGCCATTTTTGACCATTTTCAGGAGCCTCGATTTCGACTATCAAGTTCTTTATCACTTTGAAAATTGTGGAGTGTGTGAAACAAACCTAATTTGAAAAATTTACATTTGCAGAATGATTTTGAAATCTCTAGTTTTTCAGTTATTTTCCAAAGTAAAAAAGTAGTAAAAACAGGTGTCCTTCAAATGACGGCATGTTACTCAAAAACTAGGAATTTTCGAAAAATTCTAAGAATGCAGAGTTTCAATTTTGGTCTGTTTTGCACCCTCTAAAATTTTCAAAGTGAAGGAAAACTTGACTGACGAGCTCCARACCACTGAAAATGTTCAAAAGGGCCAAAAATCAACTGTGAATTTTGTTTTTATAGTCAAAAATTTTCAAAAATGAATTTTTTAGAAATAAAAATGTCGTGTCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31556</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>570040</contig_pos>
        <strand></strand>
        <context>ttttgttttt[A/G]taGTCAAAMA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCACTGAAAATGTTCAAAAGGGCCAAAAATCAACTGTGAATTTTGTTTTT</left_flank>
        <right_flank>TAGTCAAAAATTTTCAAAAATGAATTTTTTAGAAATAAAAATGTCGTGTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATCTGGCAAGTATGACAGAAATGAATCCAGATTTTCAATGTGTCAGACAGCTGATTCTCAACTTGCTCAATGTGTACAACAAGAGGTAAAAACGGTCAATAACATATACAGAAACATGTTTTTCTTTTGATTCTTGGCCATTTTTGACCATTTTCAGGAGCCTCGATTTCGACTATCAAGTTCTTTATCACTTTGAAAATTGTGGAGTGTGTGAAACAAACCTAATTTGAAAAATTTACATTTGCAGAATGATTTTGAAATCTCTAGTTTTTCAGTTATTTTCCAAAGTAAAAAAGTAGTAAAAACAGGTGTCCTTCAAATGACGGCATGTTACTCAAAAACTAGGAATTTTCGAAAAATTCTAAGAATGCAGAGTTTCAATTTTGGTCTGTTTTGCACCCTCTAAAATTTTCAAAGTGAAGGAAAACTTGACTGACGAGCTCCAAACCACTGAAAATGTTCAAAAGGGCCAAAAATCAACTGTGAATTTTGTTTTTATAGTCAAAAATTTTCAAAAATGAATTTTTTAGAAATAAAAATGTCGTGTCCTCCATGAACGAGTGCACTGATGTCCTTCGCGCAATCCTAAACTCTCCTCAACATCCGACTGTCAAAAACTGGTGCGCTGAAATTATCCACGTCGTCAATACTCATGTAGAAGAAGAAGAGCCAACACGAGCAGAGAATAATGAGCAAATTAATGACGAGTATTTGGAGGTAAGTGATTTTCCAGAAGATTCTTTTTGAGAGACAACCACGCGCTTCATATGTTTTCATTTCTTTGTTTCTTTTCTTTTTTTGGTTTTATGATTCATATATTTTTTCAACCGTTGTCTTCTTTTTACTGTTCTTTTTACTGATTTCTTTTCCTACTTCTTCCATTTCTGCTTCCACCGCTCCCCGAACCCAAATGAATCGAAAATCAAAGGTTCGAATTTCAAATCGTGGAATCTCCGAGCTAGTCCGTAGAGCCACTATCGGCGCCCTATTCCCAAATG</canonical>
            <polymorphic>TCATCTGGCAAGTATGACAGAAATGAATCCAGATTTTCAATGTGTCAGACAGCTGATTCTCAACTTGCTCAATGTGTACAACAAGAGGTAAAAACGGTCAATAACATATACAGAAACATGTTTTTCTTTTGATTCTTGGCCATTTTTGACCATTTTCAGGAGCCTCGATTTCGACTATCAAGTTCTTTATCACTTTGAAAATTGTGGAGTGTGTGAAACAAACCTAATTTGAAAAATTTACATTTGCAGAATGATTTTGAAATCTCTAGTTTTTCAGTTATTTTCCAAAGTAAAAAAGTAGTAAAAACAGGTGTCCTTCAAATGACGGCATGTTACTCAAAAACTAGGAATTTTCGAAAAATTCTAAGAATGCAGAGTTTCAATTTTGGTCTGTTTTGCACCCTCTAAAATTTTCAAAGTGAAGGAAAACTTGACTGACGAGCTCCAAACCACTGAAAATGTTCAAAAGGGCCAAAAATCAACTGTGAATTTTGTTTTTRTAGTCAAAAATTTTCAAAAATGAATTTTTTAGAAATAAAAATGTCGTGTCCTCCATGAACGAGTGCACTGATGTCCTTCGCGCAATCCTAAACTCTCCTCAACATCCGACTGTCAAAAACTGGTGCGCTGAAATTATCCACGTCGTCAATACTCATGTAGAAGAAGAAGAGCCAACACGAGCAGAGAATAATGAGCAAATTAATGACGAGTATTTGGAGGTAAGTGATTTTCCAGAAGATTCTTTTTGAGAGACAACCACGCGCTTCATATGTTTTCATTTCTTTGTTTCTTTTCTTTTTTTGGTTTTATGATTCATATATTTTTTCAACCGTTGTCTTCTTTTTACTGTTCTTTTTACTGATTTCTTTTCCTACTTCTTCCATTTCTGCTTCCACCGCTCCCCGAACCCAAATGAATCGAAAATCAAAGGTTCGAATTTCAAATCGTGGAATCTCCGAGCTAGTCCGTAGAGCCACTATCGGCGCCCTATTCCCAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAATGTGTACAACAAGAGGTAA</pcr_primer_p1>
		<pcr_primer_p2>GAGGACACGACATTTTTATTTC</pcr_primer_p2>
		<pcr_amplicon_size>485</pcr_amplicon_size>
		<canonical_amplicon>TCAATGTGTACAACAAGAGGTAAAAACGGTCAATAACATATACAGAAACATGTTTTTCTTTTGATTCTTGGCCATTTTTGACCATTTTCAGGAGCCTCGATTTCGACTATCAAGTTCTTTATCACTTTGAAAATTGTGGAGTGTGTGAAACAAACCTAATTTGAAAAATTTACATTTGCAGAATGATTTTGAAATCTCTAGTTTTTCAGTTATTTTCCAAAGTAAAAAAGTAGTAAAAACAGGTGTCCTTCAAATGACGGCATGTTACTCAAAAACTAGGAATTTTCGAAAAATTCTAAGAATGCAGAGTTTCAATTTTGGTCTGTTTTGCACCCTCTAAAATTTTCAAAGTGAAGGAAAACTTGACTGACGAGCTCCAAACCACTGAAAATGTTCAAAAGGGCCAAAAATCAACTGTGAATTTTGTTTTTATAGTCAAAAATTTTCAAAAATGAATTTTTTAGAAATAAAAATGTCGTGTCCTC</canonical_amplicon>
		<polymorphic_amplicon>TCAATGTGTACAACAAGAGGTAAAAACGGTCAATAACATATACAGAAACATGTTTTTCTTTTGATTCTTGGCCATTTTTGACCATTTTCAGGAGCCTCGATTTCGACTATCAAGTTCTTTATCACTTTGAAAATTGTGGAGTGTGTGAAACAAACCTAATTTGAAAAATTTACATTTGCAGAATGATTTTGAAATCTCTAGTTTTTCAGTTATTTTCCAAAGTAAAAAAGTAGTAAAAACAGGTGTCCTTCAAATGACGGCATGTTACTCAAAAACTAGGAATTTTCGAAAAATTCTAAGAATGCAGAGTTTCAATTTTGGTCTGTTTTGCACCCTCTAAAATTTTCAAAGTGAAGGAAAACTTGACTGACGAGCTCCAAACCACTGAAAATGTTCAAAAGGGCCAAAAATCAACTGTGAATTTTGTTTTTRTAGTCAAAAATTTTCAAAAATGAATTTTTTAGAAATAAAAATGTCGTGTCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31557</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>570049</contig_pos>
        <strand></strand>
        <context>trtaGTCAAA[A/C]ATTTTCAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGTTCAAAAGGGCCAAAAATCAACTGTGAATTTTGTTTTTATAGTCAAA</left_flank>
        <right_flank>ATTTTCAAAAATGAATTTTTTAGAAATAAAAATGTCGTGTCCTCCATGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTATGACAGAAATGAATCCAGATTTTCAATGTGTCAGACAGCTGATTCTCAACTTGCTCAATGTGTACAACAAGAGGTAAAAACGGTCAATAACATATACAGAAACATGTTTTTCTTTTGATTCTTGGCCATTTTTGACCATTTTCAGGAGCCTCGATTTCGACTATCAAGTTCTTTATCACTTTGAAAATTGTGGAGTGTGTGAAACAAACCTAATTTGAAAAATTTACATTTGCAGAATGATTTTGAAATCTCTAGTTTTTCAGTTATTTTCCAAAGTAAAAAAGTAGTAAAAACAGGTGTCCTTCAAATGACGGCATGTTACTCAAAAACTAGGAATTTTCGAAAAATTCTAAGAATGCAGAGTTTCAATTTTGGTCTGTTTTGCACCCTCTAAAATTTTCAAAGTGAAGGAAAACTTGACTGACGAGCTCCAAACCACTGAAAATGTTCAAAAGGGCCAAAAATCAACTGTGAATTTTGTTTTTATAGTCAAAAATTTTCAAAAATGAATTTTTTAGAAATAAAAATGTCGTGTCCTCCATGAACGAGTGCACTGATGTCCTTCGCGCAATCCTAAACTCTCCTCAACATCCGACTGTCAAAAACTGGTGCGCTGAAATTATCCACGTCGTCAATACTCATGTAGAAGAAGAAGAGCCAACACGAGCAGAGAATAATGAGCAAATTAATGACGAGTATTTGGAGGTAAGTGATTTTCCAGAAGATTCTTTTTGAGAGACAACCACGCGCTTCATATGTTTTCATTTCTTTGTTTCTTTTCTTTTTTTGGTTTTATGATTCATATATTTTTTCAACCGTTGTCTTCTTTTTACTGTTCTTTTTACTGATTTCTTTTCCTACTTCTTCCATTTCTGCTTCCACCGCTCCCCGAACCCAAATGAATCGAAAATCAAAGGTTCGAATTTCAAATCGTGGAATCTCCGAGCTAGTCCGTAGAGCCACTATCGGCGCCCTATTCCCAAATGGTCCGGTTC</canonical>
            <polymorphic>AAGTATGACAGAAATGAATCCAGATTTTCAATGTGTCAGACAGCTGATTCTCAACTTGCTCAATGTGTACAACAAGAGGTAAAAACGGTCAATAACATATACAGAAACATGTTTTTCTTTTGATTCTTGGCCATTTTTGACCATTTTCAGGAGCCTCGATTTCGACTATCAAGTTCTTTATCACTTTGAAAATTGTGGAGTGTGTGAAACAAACCTAATTTGAAAAATTTACATTTGCAGAATGATTTTGAAATCTCTAGTTTTTCAGTTATTTTCCAAAGTAAAAAAGTAGTAAAAACAGGTGTCCTTCAAATGACGGCATGTTACTCAAAAACTAGGAATTTTCGAAAAATTCTAAGAATGCAGAGTTTCAATTTTGGTCTGTTTTGCACCCTCTAAAATTTTCAAAGTGAAGGAAAACTTGACTGACGAGCTCCAAACCACTGAAAATGTTCAAAAGGGCCAAAAATCAACTGTGAATTTTGTTTTTATAGTCAAAMATTTTCAAAAATGAATTTTTTAGAAATAAAAATGTCGTGTCCTCCATGAACGAGTGCACTGATGTCCTTCGCGCAATCCTAAACTCTCCTCAACATCCGACTGTCAAAAACTGGTGCGCTGAAATTATCCACGTCGTCAATACTCATGTAGAAGAAGAAGAGCCAACACGAGCAGAGAATAATGAGCAAATTAATGACGAGTATTTGGAGGTAAGTGATTTTCCAGAAGATTCTTTTTGAGAGACAACCACGCGCTTCATATGTTTTCATTTCTTTGTTTCTTTTCTTTTTTTGGTTTTATGATTCATATATTTTTTCAACCGTTGTCTTCTTTTTACTGTTCTTTTTACTGATTTCTTTTCCTACTTCTTCCATTTCTGCTTCCACCGCTCCCCGAACCCAAATGAATCGAAAATCAAAGGTTCGAATTTCAAATCGTGGAATCTCCGAGCTAGTCCGTAGAGCCACTATCGGCGCCCTATTCCCAAATGGTCCGGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>413 225 114 79 74 49 21 14 11</canonical_bands>
                <polymorphic_bands>413 225 114 79 74 49 35 11</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>238 190 114 109 79 74 66 27 26 22 21 14 11 9</canonical_bands>
                <polymorphic_bands>238 190 114 109 79 74 66 35 27 26 22 11 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATGTGTACAACAAGAGGTAAA</pcr_primer_p1>
		<pcr_primer_p2>TGTTGAGGAGAGTTTAGGATTG</pcr_primer_p2>
		<pcr_amplicon_size>535</pcr_amplicon_size>
		<canonical_amplicon>CAATGTGTACAACAAGAGGTAAAAACGGTCAATAACATATACAGAAACATGTTTTTCTTTTGATTCTTGGCCATTTTTGACCATTTTCAGGAGCCTCGATTTCGACTATCAAGTTCTTTATCACTTTGAAAATTGTGGAGTGTGTGAAACAAACCTAATTTGAAAAATTTACATTTGCAGAATGATTTTGAAATCTCTAGTTTTTCAGTTATTTTCCAAAGTAAAAAAGTAGTAAAAACAGGTGTCCTTCAAATGACGGCATGTTACTCAAAAACTAGGAATTTTCGAAAAATTCTAAGAATGCAGAGTTTCAATTTTGGTCTGTTTTGCACCCTCTAAAATTTTCAAAGTGAAGGAAAACTTGACTGACGAGCTCCAAACCACTGAAAATGTTCAAAAGGGCCAAAAATCAACTGTGAATTTTGTTTTTATAGTCAAAAATTTTCAAAAATGAATTTTTTAGAAATAAAAATGTCGTGTCCTCCATGAACGAGTGCACTGATGTCCTTCGCGCAATCCTAAACTCTCCTCAACA</canonical_amplicon>
		<polymorphic_amplicon>CAATGTGTACAACAAGAGGTAAAAACGGTCAATAACATATACAGAAACATGTTTTTCTTTTGATTCTTGGCCATTTTTGACCATTTTCAGGAGCCTCGATTTCGACTATCAAGTTCTTTATCACTTTGAAAATTGTGGAGTGTGTGAAACAAACCTAATTTGAAAAATTTACATTTGCAGAATGATTTTGAAATCTCTAGTTTTTCAGTTATTTTCCAAAGTAAAAAAGTAGTAAAAACAGGTGTCCTTCAAATGACGGCATGTTACTCAAAAACTAGGAATTTTCGAAAAATTCTAAGAATGCAGAGTTTCAATTTTGGTCTGTTTTGCACCCTCTAAAATTTTCAAAGTGAAGGAAAACTTGACTGACGAGCTCCAAACCACTGAAAATGTTCAAAAGGGCCAAAAATCAACTGTGAATTTTGTTTTTATAGTCAAAMATTTTCAAAAATGAATTTTTTAGAAATAAAAATGTCGTGTCCTCCATGAACGAGTGCACTGATGTCCTTCGCGCAATCCTAAACTCTCCTCAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31558</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>582882</contig_pos>
        <strand></strand>
        <context>aaaaacacgt[T/G]cttatatatc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GAAACTTGCCCCAGACTCTTGAAAATGTGAAAATCAACTGAAAAACACGT</left_flank>
        <right_flank>CTTATATATCTTGGTACTGTATAAAAACTACGAACTGTGGAAATGTTGGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCATCTTGTCTATGAACAGAGTGTACTCGTGGAGCGCTATCATATCTGATTTAGTTGGTTCGAAAATATTAATTCTGAAAGAAAAAATGGCAAGGCCTGCGAAGGCCCGGCAAAGGCCCGGATTACAAGTATGCAGTTGATTGCGGCTATTTTCAGGAGTCTACAGCTCAGCTGTGATGTTCCCAATCAATTTGGAAACTTTAGAGGTTGTGAAACTGACCTAGATTAAATATTTTGCATTCACGGATCATTTTTTCAAATTTCTGCTTCATCAACTATTTGCAGATTTTTGAAAGACACTTTTTTAGTCCATTTTTGTACAGAAAACTTGAAAAAAACAGGTGTCTTTTAGAATTAGGCAAAAAGTTGAAAACTAGGAGTTTTCAAAAAATTCTTCGAATCCGAGGTTTTAAACTGGGTCTATTTTACAGACTTTCATAATGATCGGAAACTTGCCCCAGACTCTTGAAAATGTGAAAATCAACTGAAAAACACGTTCTTATATATCTTGGTACTGTATAAAAACTACGAACTGTGGAAATGTTGGTGGTACTATGAAAAACTTTGAAAGTCTACGGTAGCGTTCTGTTAGAAAATTTATGGTTTTTCAGAAAACTAAAAATTTTCATTCTAATTATTCACGAAAAAAGGGATTACTGTTACTACAAATCAAGTTCTGCTCTAAGCCTGAAGAATCTGGCTCACCAGATCCCGAGATCAAAGAGCCATAACAAAACCGAATTCCTATTTCAGCAACGTCACGTAGTGACTCCACCTCGTCCACACAATCAGCCACCGCCGGATTCATTTTAAATGAAGAACCCATCACTTTGTTCCGACTCGAACTCGAACGACTACAGTACATTCTTCATTTTCCCGAAGAAGTTGCCTTCCAGCTTTCTTCTACCGAGTATCAGCTTTTTTACTCCATCCAACCGATGGATTATGTTCGTTATGTGAGCTGTGATCTGACATCGGTACCAGTTTCGGAGAATCCA</canonical>
            <polymorphic>AACCATCTTGTCTATGAACAGAGTGTACTCGTGGAGCGCTATCATATCTGATTTAGTTGGTTCGAAAATATTAATTCTGAAAGAAAAAATGGCAAGGCCTGCGAAGGCCCGGCAAAGGCCCGGATTACAAGTATGCAGTTGATTGCGGCTATTTTCAGGAGTCTACAGCTCAGCTGTGATGTTCCCAATCAATTTGGAAACTTTAGAGGTTGTGAAACTGACCTAGATTAAATATTTTGCATTCACGGATCATTTTTTCAAATTTCTGCTTCATCAACTATTTGCAGATTTTTGAAAGACACTTTTTTAGTCCATTTTTGTACAGAAAACTTGAAAAAAACAGGTGTCTTTTAGAATTAGGCAAAAAGTTGAAAACTAGGAGTTTTCAAAAAATTCTTCGAATCCGAGGTTTTAAACTGGGTCTATTTTACAGACTTTCATAATGATCGGAAACTTGCCCCAGACTCTTGAAAATGTGAAAATCAACTGAAAAACACGTKCTTATATATCTTGGTACTGTATAAAAACTACGAACTGTGGAAATGTTGGTGGTACTATGAAAAACTTTGAAAGTCTACGGTAGCGTTCTGTTAGAAAATTTATGGTTTTTCAGAAAACTAAAAATTTTCATTCTAATTATTCACGAAAAAAGGGATTACTGTTACTACAAATCAAGTTCTGCTCTAAGCCTGAAGAATCTGGCTCACCAGATCCCGAGATCAAAGAGCCATAACAAAACCGAATTCCTATTTCAGCAACGTCACGTAGTGACTCCACCTCGTCCACACAATCAGCCACCGCCGGATTCATTTTAAATGAAGAACCCATCACTTTGTTCCGACTCGAACTCGAACGACTACAGTACATTCTTCATTTTCCCGAAGAAGTTGCCTTCCAGCTTTCTTCTACCGAGTATCAGCTTTTTTACTCCATCCAACCGATGGATTATGTTCGTTATGTGAGCTGTGATCTGACATCGGTACCAGTTTCGGAGAATCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGAAAATATTAATTCTGAAAGA</pcr_primer_p1>
		<pcr_primer_p2>CACCAACATTTCCACAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>491</pcr_amplicon_size>
		<canonical_amplicon>TTCGAAAATATTAATTCTGAAAGAAAAAATGGCAAGGCCTGCGAAGGCCCGGCAAAGGCCCGGATTACAAGTATGCAGTTGATTGCGGCTATTTTCAGGAGTCTACAGCTCAGCTGTGATGTTCCCAATCAATTTGGAAACTTTAGAGGTTGTGAAACTGACCTAGATTAAATATTTTGCATTCACGGATCATTTTTTCAAATTTCTGCTTCATCAACTATTTGCAGATTTTTGAAAGACACTTTTTTAGTCCATTTTTGTACAGAAAACTTGAAAAAAACAGGTGTCTTTTAGAATTAGGCAAAAAGTTGAAAACTAGGAGTTTTCAAAAAATTCTTCGAATCCGAGGTTTTAAACTGGGTCTATTTTACAGACTTTCATAATGATCGGAAACTTGCCCCAGACTCTTGAAAATGTGAAAATCAACTGAAAAACACGTTCTTATATATCTTGGTACTGTATAAAAACTACGAACTGTGGAAATGTTGGTG</canonical_amplicon>
		<polymorphic_amplicon>TTCGAAAATATTAATTCTGAAAGAAAAAATGGCAAGGCCTGCGAAGGCCCGGCAAAGGCCCGGATTACAAGTATGCAGTTGATTGCGGCTATTTTCAGGAGTCTACAGCTCAGCTGTGATGTTCCCAATCAATTTGGAAACTTTAGAGGTTGTGAAACTGACCTAGATTAAATATTTTGCATTCACGGATCATTTTTTCAAATTTCTGCTTCATCAACTATTTGCAGATTTTTGAAAGACACTTTTTTAGTCCATTTTTGTACAGAAAACTTGAAAAAAACAGGTGTCTTTTAGAATTAGGCAAAAAGTTGAAAACTAGGAGTTTTCAAAAAATTCTTCGAATCCGAGGTTTTAAACTGGGTCTATTTTACAGACTTTCATAATGATCGGAAACTTGCCCCAGACTCTTGAAAATGTGAAAATCAACTGAAAAACACGTKCTTATATATCTTGGTACTGTATAAAAACTACGAACTGTGGAAATGTTGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31559</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>582968</contig_pos>
        <strand>+</strand>
        <context>TACGGTAGCG[A/T]TCTGTTAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTGGAAATGTTGGTGGTACTATGAAAAACTTTGAAAGTCTACGGTAGCG</left_flank>
        <right_flank>TCTGTTAGAAAATTTATGGTTTTTCAGAAAACTAAAAATTTTCATTCTAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGGCAAGGCCTGCGAAGGCCCGGCAAAGGCCCGGATTACAAGTATGCAGTTGATTGCGGCTATTTTCAGGAGTCTACAGCTCAGCTGTGATGTTCCCAATCAATTTGGAAACTTTAGAGGTTGTGAAACTGACCTAGATTAAATATTTTGCATTCACGGATCATTTTTTCAAATTTCTGCTTCATCAACTATTTGCAGATTTTTGAAAGACACTTTTTTAGTCCATTTTTGTACAGAAAACTTGAAAAAAACAGGTGTCTTTTAGAATTAGGCAAAAAGTTGAAAACTAGGAGTTTTCAAAAAATTCTTCGAATCCGAGGTTTTAAACTGGGTCTATTTTACAGACTTTCATAATGATCGGAAACTTGCCCCAGACTCTTGAAAATGTGAAAATCAACTGAAAAACACGTTCTTATATATCTTGGTACTGTATAAAAACTACGAACTGTGGAAATGTTGGTGGTACTATGAAAAACTTTGAAAGTCTACGGTAGCGTTCTGTTAGAAAATTTATGGTTTTTCAGAAAACTAAAAATTTTCATTCTAATTATTCACGAAAAAAGGGATTACTGTTACTACAAATCAAGTTCTGCTCTAAGCCTGAAGAATCTGGCTCACCAGATCCCGAGATCAAAGAGCCATAACAAAACCGAATTCCTATTTCAGCAACGTCACGTAGTGACTCCACCTCGTCCACACAATCAGCCACCGCCGGATTCATTTTAAATGAAGAACCCATCACTTTGTTCCGACTCGAACTCGAACGACTACAGTACATTCTTCATTTTCCCGAAGAAGTTGCCTTCCAGCTTTCTTCTACCGAGTATCAGCTTTTTTACTCCATCCAACCGATGGATTATGTTCGTTATGTGAGCTGTGATCTGACATCGGTACCAGTTTCGGAGAATCCAAGTCCAGTTCGGAATCTTGTCAAGCGGTTGTCAGAGGTACGTTGAGTATTAAATTCCACAAAAAACTACCGTATTTCTTCTAATAG</canonical>
            <polymorphic>AAATGGCAAGGCCTGCGAAGGCCCGGCAAAGGCCCGGATTACAAGTATGCAGTTGATTGCGGCTATTTTCAGGAGTCTACAGCTCAGCTGTGATGTTCCCAATCAATTTGGAAACTTTAGAGGTTGTGAAACTGACCTAGATTAAATATTTTGCATTCACGGATCATTTTTTCAAATTTCTGCTTCATCAACTATTTGCAGATTTTTGAAAGACACTTTTTTAGTCCATTTTTGTACAGAAAACTTGAAAAAAACAGGTGTCTTTTAGAATTAGGCAAAAAGTTGAAAACTAGGAGTTTTCAAAAAATTCTTCGAATCCGAGGTTTTAAACTGGGTCTATTTTACAGACTTTCATAATGATCGGAAACTTGCCCCAGACTCTTGAAAATGTGAAAATCAACTGAAAAACACGTTCTTATATATCTTGGTACTGTATAAAAACTACGAACTGTGGAAATGTTGGTGGTACTATGAAAAACTTTGAAAGTCTACGGTAGCGWTCTGTTAGAAAATTTATGGTTTTTCAGAAAACTAAAAATTTTCATTCTAATTATTCACGAAAAAAGGGATTACTGTTACTACAAATCAAGTTCTGCTCTAAGCCTGAAGAATCTGGCTCACCAGATCCCGAGATCAAAGAGCCATAACAAAACCGAATTCCTATTTCAGCAACGTCACGTAGTGACTCCACCTCGTCCACACAATCAGCCACCGCCGGATTCATTTTAAATGAAGAACCCATCACTTTGTTCCGACTCGAACTCGAACGACTACAGTACATTCTTCATTTTCCCGAAGAAGTTGCCTTCCAGCTTTCTTCTACCGAGTATCAGCTTTTTTACTCCATCCAACCGATGGATTATGTTCGTTATGTGAGCTGTGATCTGACATCGGTACCAGTTTCGGAGAATCCAAGTCCAGTTCGGAATCTTGTCAAGCGGTTGTCAGAGGTACGTTGAGTATTAAATTCCACAAAAAACTACCGTATTTCTTCTAATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAAACTACGAACTGTGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATAGGAATTCGGTTTTGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>TAAAAACTACGAACTGTGGAAATGTTGGTGGTACTATGAAAAACTTTGAAAGTCTACGGTAGCGTTCTGTTAGAAAATTTATGGTTTTTCAGAAAACTAAAAATTTTCATTCTAATTATTCACGAAAAAAGGGATTACTGTTACTACAAATCAAGTTCTGCTCTAAGCCTGAAGAATCTGGCTCACCAGATCCCGAGATCAAAGAGCCATAACAAAACCGAATTCCTATTT</canonical_amplicon>
		<polymorphic_amplicon>TAAAAACTACGAACTGTGGAAATGTTGGTGGTACTATGAAAAACTTTGAAAGTCTACGGTAGCGWTCTGTTAGAAAATTTATGGTTTTTCAGAAAACTAAAAATTTTCATTCTAATTATTCACGAAAAAAGGGATTACTGTTACTACAAATCAAGTTCTGCTCTAAGCCTGAAGAATCTGGCTCACCAGATCCCGAGATCAAAGAGCCATAACAAAACCGAATTCCTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31560</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>591165</contig_pos>
        <strand>+</strand>
        <context>GTTACCGGCT[C/T]YACAGCTCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACGTCTGGGTGTTGAAGAGTTGTCATAGAAGATTTATTTGTTACCGGCT</left_flank>
        <right_flank>CACAGCTCCATAGACTTCCACCTCTGGCTGATTGGTCCACGTGGTGCTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATAATTGAAAATCCCGTGGGGTGGTGTCATCTCGCGGAGATGGGATGGATGGAAAGAATGAATAGTGGGGAAATTAGAAATTAAGTTCACTGAATCGAACAGCATGCGTCCCGTCGTGCGCCTTCTTTGCTGATCCGCTCCTGTTGCTCGTCGACTTCAGCAGCGAATGAGACCTAAAAAAATTTTTTTTGTAATATTTTAAATTTGAAACATTGTGTCTTCGCTTTCTAGAAATGGGGCAGCGCAACCCAGTAAAAAGAAAAAGAAGAAGAAGCAATTTAGGATTGGTGCATGCTGCCCAACAATTTTCATTTTGATGGTCGTGGTTGTCTTTTTTACCCCTCCAAAAATTTTCTCTCTCTCTCTTTCAAAAATTGGGCTACCCAAAGAACAAAAAAAAAGAAAAAGTAGAAATCTCACTTTTTTGGGCATTGTTGGTGTCGATTGAACGTCTGGGTGTTGAAGAGTTGTCATAGAAGATTTATTTGTTACCGGCTCCACAGCTCCATAGACTTCCACCTCTGGCTGATTGGTCCACGTGGTGCTGGCCGCTCGAACGTCGTCCTCTTCGGTCGCCGGTCGTGGCATCGCAATGACTGAATGGGATGGGGTAAAAGCGGGAGCGCAAAAAAGAGATGTAGTAGTTGTTGGAGAAGACGCCGGAGAAGAAGATGTGGGCGTGGCTTCGAGCAGCACCTTTCTCGGGTTCGCCTCTTCTTGCGCCGGGAGACTCAACTCTCTTTTTAGATTGACTTTCGGAAAGAGAAAAAAGAATAGAAAGAAAATGGTAATGTCCGGTGGTTGGTGTGTTCTGGAATGAGATCGGTGCATGAGATATAGAGTAGAAAAGGGGGAAATACGGAAATCGTTGAGATAAACGCGAGGAGAAGGGCGATGGATAAATTTGAAAGTGCCATTTCGATTTTGATCAAGAGCATCAAATTTTTACATTTAGAAAAATTGAAAAAAATCATTTTCTGGCTTGCTTTCCAATTTGA</canonical>
            <polymorphic>AAATAATTGAAAATCCCGTGGGGTGGTGTCATCTCGCGGAGATGGGATGGATGGAAAGAATGAATAGTGGGGAAATTAGAAATTAAGTTCACTGAATCGAACAGCATGCGTCCCGTCGTGCGCCTTCTTTGCTGATCCGCTCCTGTTGCTCGTCGACTTCAGCAGCGAATGAGACCTAAAAAAATTTTTTTTGTAATATTTTAAATTTGAAACATTGTGTCTTCGCTTTCTAGAAATGGGGCAGCGCAACCCAGTAAAAAGAAAAAGAAGAAGAAGCAATTTAGGATTGGTGCATGCTGCCCAACAATTTTCATTTTGATGGTCGTGGTTGTCTTTTTTACCCCTCCAAAAATTTTCTCTCTCTCTCTTTCAAAAATTGGGCTACCCAAAGAACAAAAAAAAAGAAAAAGTAGAAATCTCACTTTTTTGGGCATTGTTGGTGTCGATTGAACGTCTGGGTGTTGAAGAGTTGTCATAGAAGATTTATTTGTTACCGGCTYCACAGCTCCATAGACTTCCACCTCTGGCTGATTGGTCCACGTGGTGCTGGCCGCTCGAACGTCGTCCTCTTCGGTCGCCGGTCGTGGCATCGCAATGACTGAATGGGATGGGGTAAAAGCGGGAGCGCAAAAAAGAGATGTAGTAGTTGTTGGAGAAGACGCCGGAGAAGAAGATGTGGGCGTGGCTTCGAGCAGCACCTTTCTCGGGTTCGCCTCTTCTTGCGCCGGGAGACTCAACTCTCTTTTTAGATTGACTTTCGGAAAGAGAAAAAAGAATAGAAAGAAAATGGTAATGTCCGGTGGTTGGTGTGTTCTGGAATGAGATCGGTGCATGAGATATAGAGTAGAAAAGGGGGAAATACGGAAATCGTTGAGATAAACGCGAGGAGAAGGGCGATGGATAAATTTGAAAGTGCCATTTCGATTTTGATCAAGAGCATCAAATTTTTACATTTAGAAAAATTGAAAAAAATCATTTTCTGGCTTGCTTTCCAATTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTTTCAAAAATTGGGCTAC</pcr_primer_p1>
		<pcr_primer_p2>TCCAACAACTACTACATCTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>290</pcr_amplicon_size>
		<canonical_amplicon>CTCTTTCAAAAATTGGGCTACCCAAAGAACAAAAAAAAAGAAAAAGTAGAAATCTCACTTTTTTGGGCATTGTTGGTGTCGATTGAACGTCTGGGTGTTGAAGAGTTGTCATAGAAGATTTATTTGTTACCGGCTCCACAGCTCCATAGACTTCCACCTCTGGCTGATTGGTCCACGTGGTGCTGGCCGCTCGAACGTCGTCCTCTTCGGTCGCCGGTCGTGGCATCGCAATGACTGAATGGGATGGGGTAAAAGCGGGAGCGCAAAAAAGAGATGTAGTAGTTGTTGGA</canonical_amplicon>
		<polymorphic_amplicon>CTCTTTCAAAAATTGGGCTACCCAAAGAACAAAAAAAAAGAAAAAGTAGAAATCTCACTTTTTTGGGCATTGTTGGTGTCGATTGAACGTCTGGGTGTTGAAGAGTTGTCATAGAAGATTTATTTGTTACCGGCTYCACAGCTCCATAGACTTCCACCTCTGGCTGATTGGTCCACGTGGTGCTGGCCGCTCGAACGTCGTCCTCTTCGGTCGCCGGTCGTGGCATCGCAATGACTGAATGGGATGGGGTAAAAGCGGGAGCGCAAAAAAGAGATGTAGTAGTTGTTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31561</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>591166</contig_pos>
        <strand>+</strand>
        <context>TTACCGGCTY[C/T]ACAGCTCCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGTCTGGGTGTTGAAGAGTTGTCATAGAAGATTTATTTGTTACCGGCTC</left_flank>
        <right_flank>ACAGCTCCATAGACTTCCACCTCTGGCTGATTGGTCCACGTGGTGCTGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAATTGAAAATCCCGTGGGGTGGTGTCATCTCGCGGAGATGGGATGGATGGAAAGAATGAATAGTGGGGAAATTAGAAATTAAGTTCACTGAATCGAACAGCATGCGTCCCGTCGTGCGCCTTCTTTGCTGATCCGCTCCTGTTGCTCGTCGACTTCAGCAGCGAATGAGACCTAAAAAAATTTTTTTTGTAATATTTTAAATTTGAAACATTGTGTCTTCGCTTTCTAGAAATGGGGCAGCGCAACCCAGTAAAAAGAAAAAGAAGAAGAAGCAATTTAGGATTGGTGCATGCTGCCCAACAATTTTCATTTTGATGGTCGTGGTTGTCTTTTTTACCCCTCCAAAAATTTTCTCTCTCTCTCTTTCAAAAATTGGGCTACCCAAAGAACAAAAAAAAAGAAAAAGTAGAAATCTCACTTTTTTGGGCATTGTTGGTGTCGATTGAACGTCTGGGTGTTGAAGAGTTGTCATAGAAGATTTATTTGTTACCGGCTCCACAGCTCCATAGACTTCCACCTCTGGCTGATTGGTCCACGTGGTGCTGGCCGCTCGAACGTCGTCCTCTTCGGTCGCCGGTCGTGGCATCGCAATGACTGAATGGGATGGGGTAAAAGCGGGAGCGCAAAAAAGAGATGTAGTAGTTGTTGGAGAAGACGCCGGAGAAGAAGATGTGGGCGTGGCTTCGAGCAGCACCTTTCTCGGGTTCGCCTCTTCTTGCGCCGGGAGACTCAACTCTCTTTTTAGATTGACTTTCGGAAAGAGAAAAAAGAATAGAAAGAAAATGGTAATGTCCGGTGGTTGGTGTGTTCTGGAATGAGATCGGTGCATGAGATATAGAGTAGAAAAGGGGGAAATACGGAAATCGTTGAGATAAACGCGAGGAGAAGGGCGATGGATAAATTTGAAAGTGCCATTTCGATTTTGATCAAGAGCATCAAATTTTTACATTTAGAAAAATTGAAAAAAATCATTTTCTGGCTTGCTTTCCAATTTGAA</canonical>
            <polymorphic>AATAATTGAAAATCCCGTGGGGTGGTGTCATCTCGCGGAGATGGGATGGATGGAAAGAATGAATAGTGGGGAAATTAGAAATTAAGTTCACTGAATCGAACAGCATGCGTCCCGTCGTGCGCCTTCTTTGCTGATCCGCTCCTGTTGCTCGTCGACTTCAGCAGCGAATGAGACCTAAAAAAATTTTTTTTGTAATATTTTAAATTTGAAACATTGTGTCTTCGCTTTCTAGAAATGGGGCAGCGCAACCCAGTAAAAAGAAAAAGAAGAAGAAGCAATTTAGGATTGGTGCATGCTGCCCAACAATTTTCATTTTGATGGTCGTGGTTGTCTTTTTTACCCCTCCAAAAATTTTCTCTCTCTCTCTTTCAAAAATTGGGCTACCCAAAGAACAAAAAAAAAGAAAAAGTAGAAATCTCACTTTTTTGGGCATTGTTGGTGTCGATTGAACGTCTGGGTGTTGAAGAGTTGTCATAGAAGATTTATTTGTTACCGGCTCYACAGCTCCATAGACTTCCACCTCTGGCTGATTGGTCCACGTGGTGCTGGCCGCTCGAACGTCGTCCTCTTCGGTCGCCGGTCGTGGCATCGCAATGACTGAATGGGATGGGGTAAAAGCGGGAGCGCAAAAAAGAGATGTAGTAGTTGTTGGAGAAGACGCCGGAGAAGAAGATGTGGGCGTGGCTTCGAGCAGCACCTTTCTCGGGTTCGCCTCTTCTTGCGCCGGGAGACTCAACTCTCTTTTTAGATTGACTTTCGGAAAGAGAAAAAAGAATAGAAAGAAAATGGTAATGTCCGGTGGTTGGTGTGTTCTGGAATGAGATCGGTGCATGAGATATAGAGTAGAAAAGGGGGAAATACGGAAATCGTTGAGATAAACGCGAGGAGAAGGGCGATGGATAAATTTGAAAGTGCCATTTCGATTTTGATCAAGAGCATCAAATTTTTACATTTAGAAAAATTGAAAAAAATCATTTTCTGGCTTGCTTTCCAATTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>105 99 94 92 86 85 73 41 41 40 35 29 22 21 19 19 19 19 18 13 7 6 5 4 3 3 2</canonical_bands>
                <polymorphic_bands>105 99 94 92 86 85 73 59 41 40 35 29 22 21 19 19 19 19 13 7 6 5 4 3 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTTTCAAAAATTGGGCTAC</pcr_primer_p1>
		<pcr_primer_p2>TCCAACAACTACTACATCTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>290</pcr_amplicon_size>
		<canonical_amplicon>CTCTTTCAAAAATTGGGCTACCCAAAGAACAAAAAAAAAGAAAAAGTAGAAATCTCACTTTTTTGGGCATTGTTGGTGTCGATTGAACGTCTGGGTGTTGAAGAGTTGTCATAGAAGATTTATTTGTTACCGGCTCCACAGCTCCATAGACTTCCACCTCTGGCTGATTGGTCCACGTGGTGCTGGCCGCTCGAACGTCGTCCTCTTCGGTCGCCGGTCGTGGCATCGCAATGACTGAATGGGATGGGGTAAAAGCGGGAGCGCAAAAAAGAGATGTAGTAGTTGTTGGA</canonical_amplicon>
		<polymorphic_amplicon>CTCTTTCAAAAATTGGGCTACCCAAAGAACAAAAAAAAAGAAAAAGTAGAAATCTCACTTTTTTGGGCATTGTTGGTGTCGATTGAACGTCTGGGTGTTGAAGAGTTGTCATAGAAGATTTATTTGTTACCGGCTCYACAGCTCCATAGACTTCCACCTCTGGCTGATTGGTCCACGTGGTGCTGGCCGCTCGAACGTCGTCCTCTTCGGTCGCCGGTCGTGGCATCGCAATGACTGAATGGGATGGGGTAAAAGCGGGAGCGCAAAAAAGAGATGTAGTAGTTGTTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31562</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>591518</contig_pos>
        <strand>+</strand>
        <context>AGTAGAAAAG[C/G]GGGAAATACG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTTGGTGTGTTCTGGAATGAGATCGGTGCATGAGATATAGAGTAGAAAAG</left_flank>
        <right_flank>GGGAAATACGGAAATCGTTGAGATAAACGCGAGGAGAAGGGCGATGGATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTCTCTCTCTCTTTCAAAAATTGGGCTACCCAAAGAACAAAAAAAAAGAAAAAGTAGAAATCTCACTTTTTTGGGCATTGTTGGTGTCGATTGAACGTCTGGGTGTTGAAGAGTTGTCATAGAAGATTTATTTGTTACCGGCTCCACAGCTCCATAGACTTCCACCTCTGGCTGATTGGTCCACGTGGTGCTGGCCGCTCGAACGTCGTCCTCTTCGGTCGCCGGTCGTGGCATCGCAATGACTGAATGGGATGGGGTAAAAGCGGGAGCGCAAAAAAGAGATGTAGTAGTTGTTGGAGAAGACGCCGGAGAAGAAGATGTGGGCGTGGCTTCGAGCAGCACCTTTCTCGGGTTCGCCTCTTCTTGCGCCGGGAGACTCAACTCTCTTTTTAGATTGACTTTCGGAAAGAGAAAAAAGAATAGAAAGAAAATGGTAATGTCCGGTGGTTGGTGTGTTCTGGAATGAGATCGGTGCATGAGATATAGAGTAGAAAAGGGGGAAATACGGAAATCGTTGAGATAAACGCGAGGAGAAGGGCGATGGATAAATTTGAAAGTGCCATTTCGATTTTGATCAAGAGCATCAAATTTTTACATTTAGAAAAATTGAAAAAAATCATTTTCTGGCTTGCTTTCCAATTTGAACTGACAAGGGAACCTCAACTCAGATTTTGATAAATTTTCTAGATAATTCAAAAATAGCGTATCTAGAAACCAATGAAAATTTTTGAATCCAAAAATTTCGCCGGTTTCAGCCGAGCTATATCAGTTTCAGTAACAAAAATCTCGTTTTCAGTGCAAAAGCAATTTTCAAAAATGAGTTTCTCAATATTTAGGATGTTCAAAAACATAGAAATCATTGTGTTATGATCAAACTGAAATGAAATTTCATTATTCGAACATTTTTTTTTGAATGTATGCAAGTGCTGGGAAAAGGTTCGAAAATTAGAGAAAAAAGAATTTTTGGTAAAACGTTTAAAAAACAAAACTTTAAGTA</canonical>
            <polymorphic>TTTCTCTCTCTCTCTTTCAAAAATTGGGCTACCCAAAGAACAAAAAAAAAGAAAAAGTAGAAATCTCACTTTTTTGGGCATTGTTGGTGTCGATTGAACGTCTGGGTGTTGAAGAGTTGTCATAGAAGATTTATTTGTTACCGGCTCCACAGCTCCATAGACTTCCACCTCTGGCTGATTGGTCCACGTGGTGCTGGCCGCTCGAACGTCGTCCTCTTCGGTCGCCGGTCGTGGCATCGCAATGACTGAATGGGATGGGGTAAAAGCGGGAGCGCAAAAAAGAGATGTAGTAGTTGTTGGAGAAGACGCCGGAGAAGAAGATGTGGGCGTGGCTTCGAGCAGCACCTTTCTCGGGTTCGCCTCTTCTTGCGCCGGGAGACTCAACTCTCTTTTTAGATTGACTTTCGGAAAGAGAAAAAAGAATAGAAAGAAAATGGTAATGTCCGGTGGTTGGTGTGTTCTGGAATGAGATCGGTGCATGAGATATAGAGTAGAAAAGSGGGAAATACGGAAATCGTTGAGATAAACGCGAGGAGAAGGGCGATGGATAAATTTGAAAGTGCCATTTCGATTTTGATCAAGAGCATCAAATTTTTACATTTAGAAAAATTGAAAAAAATCATTTTCTGGCTTGCTTTCCAATTTGAACTGACAAGGGAACCTCAACTCAGATTTTGATAAATTTTCTAGATAATTCAAAAATAGCGTATCTAGAAACCAATGAAAATTTTTGAATCCAAAAATTTCGCCGGTTTCAGCCGAGCTATATCAGTTTCAGTAACAAAAATCTCGTTTTCAGTGCAAAAGCAATTTTCAAAAATGAGTTTCTCAATATTTAGGATGTTCAAAAACATAGAAATCATTGTGTTATGATCAAACTGAAATGAAATTTCATTATTCGAACATTTTTTTTTGAATGTATGCAAGTGCTGGGAAAAGGTTCGAAAATTAGAGAAAAAAGAATTTTTGGTAAAACGTTTAAAAAACAAAACTTTAAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGAGACTCAACTCTCTTTTTAG</pcr_primer_p1>
		<pcr_primer_p2>AATGTAAAAATTTGATGCTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>GGGAGACTCAACTCTCTTTTTAGATTGACTTTCGGAAAGAGAAAAAAGAATAGAAAGAAAATGGTAATGTCCGGTGGTTGGTGTGTTCTGGAATGAGATCGGTGCATGAGATATAGAGTAGAAAAGGGGGAAATACGGAAATCGTTGAGATAAACGCGAGGAGAAGGGCGATGGATAAATTTGAAAGTGCCATTTCGATTTTGATCAAGAGCATCAAATTTTTACATT</canonical_amplicon>
		<polymorphic_amplicon>GGGAGACTCAACTCTCTTTTTAGATTGACTTTCGGAAAGAGAAAAAAGAATAGAAAGAAAATGGTAATGTCCGGTGGTTGGTGTGTTCTGGAATGAGATCGGTGCATGAGATATAGAGTAGAAAAGSGGGAAATACGGAAATCGTTGAGATAAACGCGAGGAGAAGGGCGATGGATAAATTTGAAAGTGCCATTTCGATTTTGATCAAGAGCATCAAATTTTTACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31563</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>600802</contig_pos>
        <strand>+</strand>
        <context>TCGAAGTCTT[A/C]GAATCTCAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTGAGATTTTCCTAATATGGTAACTCCGAATCTCGAATTTCGAAGTCTT</left_flank>
        <right_flank>GAATCTCAGAATTTTGAAATATGAAAATATGATATCTCAAGATATCATAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGACCCATCCTCCCGAGCTTGGATAACATCAATCATAAAATCTGGAACCGGTGGTAGTTCAACGTCAGTTTCACCAAGTCCACTTATCAAAGATGGACATGTTAAAAGTGCATCAGCAATCAGCTACACGGACGCTCATTGGACACTGACGCTGAGCACCTTGAAGTGACAGAAGGCAAGTGTAAGGATGGCATCGGTGGCATGGAAAAGGTTTATGATGGATTAGGGGTTACAGGGTTGAATCCACGTGCGCGATCGATGGGCGACACTTTCTTGGTATGTGTTCATAATGTGAGCGAAGATCAGCCGTATGCAATTCTGAGGGCTGGAATTAACAGCACAGCAGCAGATATTATTCGACAGGTTGGTCTATGAAACTTGAAATTGATAACTTGAGGCACTAAAAATCAGATATAATAAAACACAAAAAAATTTGAACAGAAAAGTTTTTGAGATTTTCCTAATATGGTAACTCCGAATCTCGAATTTCGAAGTCTTCGAATCTCAGAATTTTGAAATATGAAAATATGATATCTCAAGATATCATAATCAAGATTTTCAGTTTTTGGATACTAAATTTCTGAACATCTGAGTCCTGAAATGTCATACTTTCATCTTTAACATTTTTTTCGATTTCAAAATGTGGTGGTCTTAGAATTTTGGGGAAAATTTTCTAGTTGGTTATTTTGGATTTTANAGAAAATTTTGGATTTTAATAAAATTTGGGTTTTTAAAAAAATTTTGGATTTTAAAGAAAATATTGGATTTTGATGAATTTAAATATTAGATTTTGATGAATTTAAAAACCTTGAAAAACTTTAAAATCCAAAAATTTCTGGTCTTCTCTAAAATCCAATTTTTTTTCAAAATCCAAAAATTTCTTTAAAATCCAAATTTTTTTCTAAAATCCAAAATTTTTATTAAAACCCAAAAATTTTTTTAAAATCCAAAATAACCAACTAGAGCCGAATTTTGCAATCTAAGAGTTCGATAATTTTA</canonical>
            <polymorphic>AGGACCCATCCTCCCGAGCTTGGATAACATCAATCATAAAATCTGGAACCGGTGGTAGTTCAACGTCAGTTTCACCAAGTCCACTTATCAAAGATGGACATGTTAAAAGTGCATCAGCAATCAGCTACACGGACGCTCATTGGACACTGACGCTGAGCACCTTGAAGTGACAGAAGGCAAGTGTAAGGATGGCATCGGTGGCATGGAAAAGGTTTATGATGGATTAGGGGTTACAGGGTTGAATCCACGTGCGCGATCGATGGGCGACACTTTCTTGGTATGTGTTCATAATGTGAGCGAAGATCAGCCGTATGCAATTCTGAGGGCTGGAATTAACAGCACAGCAGCAGATATTATTCGACAGGTTGGTCTATGAAACTTGAAATTGATAACTTGAGGCACTAAAAATCAGATATAATAAAACACAAAAAAATTTGAACAGAAAAGTTTTTGAGATTTTCCTAATATGGTAACTCCGAATCTCGAATTTCGAAGTCTTMGAATCTCAGAATTTTGAAATATGAAAATATGATATCTCAAGATATCATAATCAAGATTTTCAGTTTTTGGATACTAAATTTCTGAACATCTGAGTCCTGAAATGTCATACTTTCATCTTTAACATTTTTTTCGATTTCAAAATGTGGTGGTCTTAGAATTTTGGGGAAAATTTTCTAGTTGGTTATTTTGGATTTTANAGAAAATTTTGGATTTTAATAAAATTTGGGTTTTTAAAAAAATTTTGGATTTTAAAGAAAATATTGGATTTTGATGAATTTAAATATTAGATTTTGATGAATTTAAAAACCTTGAAAAACTTTAAAATCCAAAAATTTCTGGTCTTCTCTAAAATCCAATTTTTTTTCAAAATCCAAAAATTTCTTTAAAATCCAAATTTTTTTCTAAAATCCAAAATTTTTATTAAAACCCAAAAATTTTTTTAAAATCCAAAATAACCAACTAGAGCCGAATTTTGCAATCTAAGAGTTCGATAATTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 490 9</canonical_bands>
                <polymorphic_bands>510 490</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>358 258 132 125 101 10 9 7</canonical_bands>
                <polymorphic_bands>358 258 141 125 101 10 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGGTTGGTCTATGAAACTTG</pcr_primer_p1>
		<pcr_primer_p2>AGTATGACATTTCAGGACTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACAGGTTGGTCTATGAAACTTGAAATTGATAACTTGAGGCACTAAAAATCAGATATAATAAAACACAAAAAAATTTGAACAGAAAAGTTTTTGAGATTTTCCTAATATGGTAACTCCGAATCTCGAATTTCGAAGTCTTCGAATCTCAGAATTTTGAAATATGAAAATATGATATCTCAAGATATCATAATCAAGATTTTCAGTTTTTGGATACTAAATTTCTGAACATCTGAGTCCTGAAATGTCATACT</canonical_amplicon>
		<polymorphic_amplicon>ACAGGTTGGTCTATGAAACTTGAAATTGATAACTTGAGGCACTAAAAATCAGATATAATAAAACACAAAAAAATTTGAACAGAAAAGTTTTTGAGATTTTCCTAATATGGTAACTCCGAATCTCGAATTTCGAAGTCTTMGAATCTCAGAATTTTGAAATATGAAAATATGATATCTCAAGATATCATAATCAAGATTTTCAGTTTTTGGATACTAAATTTCTGAACATCTGAGTCCTGAAATGTCATACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31564</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>611594</contig_pos>
        <strand></strand>
        <context>gggtactatt[T/C]aagtttgatg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGTTACTTTTTCATAAATACTCCTTTTTTTCAATAAATAGGGGTACTATT</left_flank>
        <right_flank>AAGTTTGATGTTCACAGCCAGTTTTTGAAAGGTTCTCAGTCTAAAAAAAT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTGGCATCTCTTCCTATTCATAATTCCATATTTCACAACATTCAACCTATTTCAGACTTACATGAGTCAAGACTGGATAGTGAACACACGGATCCTTCTTCTCCACTTTTTCAGAAGACGACGTGGAGATTCTAATCTTCTCCTCCTCTTCACGTCGTTTGATTTCCTCTTCTCTACGCTTCAGAGCTTCCTGACGCTCTTGTTCTCGTCGATGATACTCGTCCATTCTTCTTTTGTGTTCCTCTTCTTGTTCCTTTCGTCTTTGTTCTTGAAGTTTCGCCTCTTCCTCTCGCTTCTTTTCTTCTGCAGCTCGACGCTCAGCTTCCAGACGGCGTTCTGAATCATTCATTGTTCATTTACAATTATTTTTGTTATACAGTGCCGGTCAATAAAATACACAAAATCGTATTTTTCGGTTGATTTTCGGTCATTTTAATCATTTTTCAGGAGTTACTTTTTCATAAATACTCCTTTTTTTCAATAAATAGGGGTACTATTTAAGTTTGATGTTCACAGCCAGTTTTTGAAAGGTTCTCAGTCTAAAAAAATTATTTATTGATAGAATAATATTGTAAAAACAATATTGTCTGTTCCACTAAAATCATTTAATCTTGAAAAAATGGTATGAATAGGTAGAGCTAAAAATGTACTGTATGGTGTCCAAAAAAGATGAGTTTTCAGCTCATAGTAGTTGAGAAATTTGAGTCCAAAGTTGTTTACCTCTCAAAAGCAGGTAAATCATTCGAGAAAAGGAAAACAATGTTCCGTACATTTACACGCGACCATTTTCGGTTTGGTGAAAAATTAATTCGATTTTTTGGAAGTAAATGATTTTCCTAGATAAAAGTTCAACATCATAAAAAATTTGAGAAGTGATCGGAAAATTCTCCAGATTGCTGAGAATGGTTTAATATGACCAAAAATACACTAAAATTACGTTTTTTGAACTTATTCGCCTAAATTCTCACCTTCTTCTCTACGTTCCAACTCGATCCGTTG</canonical>
            <polymorphic>GCTGGCATCTCTTCCTATTCATAATTCCATATTTCACAACATTCAACCTATTTCAGACTTACATGAGTCAAGACTGGATAGTGAACACACGGATCCTTCTTCTCCACTTTTTCAGAAGACGACGTGGAGATTCTAATCTTCTCCTCCTCTTCACGTCGTTTGATTTCCTCTTCTCTACGCTTCAGAGCTTCCTGACGCTCTTGTTCTCGTCGATGATACTCGTCCATTCTTCTTTTGTGTTCCTCTTCTTGTTCCTTTCGTCTTTGTTCTTGAAGTTTCGCCTCTTCCTCTCGCTTCTTTTCTTCTGCAGCTCGACGCTCAGCTTCCAGACGGCGTTCTGAATCATTCATTGTTCATTTACAATTATTTTTGTTATACAGTGCCGGTCAATAAAATACACAAAATCGTATTTTTCGGTTGATTTTCGGTCATTTTAATCATTTTTCAGGAGTTACTTTTTCATAAATACTCCTTTTTTTCAATAAATAGGGGTACTATTYAAGTTTGATGTTCACAGCCAGTTTTTGAAAGGTTCTCAGTCTAAAAAAATTATTTATTGATAGAATAATATTGTAAAAACAATATTGTCTGTTCCACTAAAATCATTTAATCTTGAAAAAATGGTATGAATAGGTAGAGCTAAAAATGTACTGTATGGTGTCCAAAAAAGATGAGTTTTCAGCTCATAGTAGTTGAGAAATTTGAGTCCAAAGTTGTTTACCTCTCAAAAGCAGGTAAATCATTCGAGAAAAGGAAAACAATGTTCCGTACATTTACACGCGACCATTTTCGGTTTGGTGAAAAATTAATTCGATTTTTTGGAAGTAAATGATTTTCCTAGATAAAAGTTCAACATCATAAAAAATTTGAGAAGTGATCGGAAAATTCTCCAGATTGCTGAGAATGGTTTAATATGACCAAAAATACACTAAAATTACGTTTTTTGAACTTATTCGCCTAAATTCTCACCTTCTTCTCTACGTTCCAACTCGATCCGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>434 199 108 103 91 65</canonical_bands>
                <polymorphic_bands>434 199 173 103 91</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCTTTTCTTCTGCAGCTC</pcr_primer_p1>
		<pcr_primer_p2>TTATGATGTTGAACTTTTATCTAGGA</pcr_primer_p2>
		<pcr_amplicon_size>568</pcr_amplicon_size>
		<canonical_amplicon>CTTCTTTTCTTCTGCAGCTCGACGCTCAGCTTCCAGACGGCGTTCTGAATCATTCATTGTTCATTTACAATTATTTTTGTTATACAGTGCCGGTCAATAAAATACACAAAATCGTATTTTTCGGTTGATTTTCGGTCATTTTAATCATTTTTCAGGAGTTACTTTTTCATAAATACTCCTTTTTTTCAATAAATAGGGGTACTATTTAAGTTTGATGTTCACAGCCAGTTTTTGAAAGGTTCTCAGTCTAAAAAAATTATTTATTGATAGAATAATATTGTAAAAACAATATTGTCTGTTCCACTAAAATCATTTAATCTTGAAAAAATGGTATGAATAGGTAGAGCTAAAAATGTACTGTATGGTGTCCAAAAAAGATGAGTTTTCAGCTCATAGTAGTTGAGAAATTTGAGTCCAAAGTTGTTTACCTCTCAAAAGCAGGTAAATCATTCGAGAAAAGGAAAACAATGTTCCGTACATTTACACGCGACCATTTTCGGTTTGGTGAAAAATTAATTCGATTTTTTGGAAGTAAATGATTTTCCTAGATAAAAGTTCAACATCATAA</canonical_amplicon>
		<polymorphic_amplicon>CTTCTTTTCTTCTGCAGCTCGACGCTCAGCTTCCAGACGGCGTTCTGAATCATTCATTGTTCATTTACAATTATTTTTGTTATACAGTGCCGGTCAATAAAATACACAAAATCGTATTTTTCGGTTGATTTTCGGTCATTTTAATCATTTTTCAGGAGTTACTTTTTCATAAATACTCCTTTTTTTCAATAAATAGGGGTACTATTYAAGTTTGATGTTCACAGCCAGTTTTTGAAAGGTTCTCAGTCTAAAAAAATTATTTATTGATAGAATAATATTGTAAAAACAATATTGTCTGTTCCACTAAAATCATTTAATCTTGAAAAAATGGTATGAATAGGTAGAGCTAAAAATGTACTGTATGGTGTCCAAAAAAGATGAGTTTTCAGCTCATAGTAGTTGAGAAATTTGAGTCCAAAGTTGTTTACCTCTCAAAAGCAGGTAAATCATTCGAGAAAAGGAAAACAATGTTCCGTACATTTACACGCGACCATTTTCGGTTTGGTGAAAAATTAATTCGATTTTTTGGAAGTAAATGATTTTCCTAGATAAAAGTTCAACATCATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31565</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>611802</contig_pos>
        <strand></strand>
        <context>aaatttgagt[C/T]caaagttgtt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGTCCAAAAAAGATGAGTTTTCAGCTCATAGTAGTTGAGAAATTTGAGT</left_flank>
        <right_flank>CAAAGTTGTTTACCTCTCAAAAGCAGGTAAATCATTCGAGAAAAGGAAAA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCGATGATACTCGTCCATTCTTCTTTTGTGTTCCTCTTCTTGTTCCTTTCGTCTTTGTTCTTGAAGTTTCGCCTCTTCCTCTCGCTTCTTTTCTTCTGCAGCTCGACGCTCAGCTTCCAGACGGCGTTCTGAATCATTCATTGTTCATTTACAATTATTTTTGTTATACAGTGCCGGTCAATAAAATACACAAAATCGTATTTTTCGGTTGATTTTCGGTCATTTTAATCATTTTTCAGGAGTTACTTTTTCATAAATACTCCTTTTTTTCAATAAATAGGGGTACTATTTAAGTTTGATGTTCACAGCCAGTTTTTGAAAGGTTCTCAGTCTAAAAAAATTATTTATTGATAGAATAATATTGTAAAAACAATATTGTCTGTTCCACTAAAATCATTTAATCTTGAAAAAATGGTATGAATAGGTAGAGCTAAAAATGTACTGTATGGTGTCCAAAAAAGATGAGTTTTCAGCTCATAGTAGTTGAGAAATTTGAGTCCAAAGTTGTTTACCTCTCAAAAGCAGGTAAATCATTCGAGAAAAGGAAAACAATGTTCCGTACATTTACACGCGACCATTTTCGGTTTGGTGAAAAATTAATTCGATTTTTTGGAAGTAAATGATTTTCCTAGATAAAAGTTCAACATCATAAAAAATTTGAGAAGTGATCGGAAAATTCTCCAGATTGCTGAGAATGGTTTAATATGACCAAAAATACACTAAAATTACGTTTTTTGAACTTATTCGCCTAAATTCTCACCTTCTTCTCTACGTTCCAACTCGATCCGTTGTTGTTCTTCCTCTTGTCTTCTGATCTCCTCAATTCTCTTTTTCTCCTCTTCGATACGACGGATTTCCTCCAAACGTAGGGATTCTTCCTCGAGTCTGCGAATCTCATCGAGTCGTTGTTGCTCTTCTGGAAGACTTGATTTTCGAAACAAAAAAACCAACAATTTTAAAATCACCTTCCAATCGGAGCCTCTCCTCTTCCAGTCTCTT</canonical>
            <polymorphic>GTCGATGATACTCGTCCATTCTTCTTTTGTGTTCCTCTTCTTGTTCCTTTCGTCTTTGTTCTTGAAGTTTCGCCTCTTCCTCTCGCTTCTTTTCTTCTGCAGCTCGACGCTCAGCTTCCAGACGGCGTTCTGAATCATTCATTGTTCATTTACAATTATTTTTGTTATACAGTGCCGGTCAATAAAATACACAAAATCGTATTTTTCGGTTGATTTTCGGTCATTTTAATCATTTTTCAGGAGTTACTTTTTCATAAATACTCCTTTTTTTCAATAAATAGGGGTACTATTTAAGTTTGATGTTCACAGCCAGTTTTTGAAAGGTTCTCAGTCTAAAAAAATTATTTATTGATAGAATAATATTGTAAAAACAATATTGTCTGTTCCACTAAAATCATTTAATCTTGAAAAAATGGTATGAATAGGTAGAGCTAAAAATGTACTGTATGGTGTCCAAAAAAGATGAGTTTTCAGCTCATAGTAGTTGAGAAATTTGAGTYCAAAGTTGTTTACCTCTCAAAAGCAGGTAAATCATTCGAGAAAAGGAAAACAATGTTCCGTACATTTACACGCGACCATTTTCGGTTTGGTGAAAAATTAATTCGATTTTTTGGAAGTAAATGATTTTCCTAGATAAAAGTTCAACATCATAAAAAATTTGAGAAGTGATCGGAAAATTCTCCAGATTGCTGAGAATGGTTTAATATGACCAAAAATACACTAAAATTACGTTTTTTGAACTTATTCGCCTAAATTCTCACCTTCTTCTCTACGTTCCAACTCGATCCGTTGTTGTTCTTCCTCTTGTCTTCTGATCTCCTCAATTCTCTTTTTCTCCTCTTCGATACGACGGATTTCCTCCAAACGTAGGGATTCTTCCTCGAGTCTGCGAATCTCATCGAGTCGTTGTTGCTCTTCTGGAAGACTTGATTTTCGAAACAAAAAAACCAACAATTTTAAAATCACCTTCCAATCGGAGCCTCTCCTCTTCCAGTCTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>376 364 132 99 11 10 8</canonical_bands>
                <polymorphic_bands>740 132 99 11 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCTTTTCTTCTGCAGCTC</pcr_primer_p1>
		<pcr_primer_p2>TTATGATGTTGAACTTTTATCTAGGA</pcr_primer_p2>
		<pcr_amplicon_size>568</pcr_amplicon_size>
		<canonical_amplicon>CTTCTTTTCTTCTGCAGCTCGACGCTCAGCTTCCAGACGGCGTTCTGAATCATTCATTGTTCATTTACAATTATTTTTGTTATACAGTGCCGGTCAATAAAATACACAAAATCGTATTTTTCGGTTGATTTTCGGTCATTTTAATCATTTTTCAGGAGTTACTTTTTCATAAATACTCCTTTTTTTCAATAAATAGGGGTACTATTTAAGTTTGATGTTCACAGCCAGTTTTTGAAAGGTTCTCAGTCTAAAAAAATTATTTATTGATAGAATAATATTGTAAAAACAATATTGTCTGTTCCACTAAAATCATTTAATCTTGAAAAAATGGTATGAATAGGTAGAGCTAAAAATGTACTGTATGGTGTCCAAAAAAGATGAGTTTTCAGCTCATAGTAGTTGAGAAATTTGAGTCCAAAGTTGTTTACCTCTCAAAAGCAGGTAAATCATTCGAGAAAAGGAAAACAATGTTCCGTACATTTACACGCGACCATTTTCGGTTTGGTGAAAAATTAATTCGATTTTTTGGAAGTAAATGATTTTCCTAGATAAAAGTTCAACATCATAA</canonical_amplicon>
		<polymorphic_amplicon>CTTCTTTTCTTCTGCAGCTCGACGCTCAGCTTCCAGACGGCGTTCTGAATCATTCATTGTTCATTTACAATTATTTTTGTTATACAGTGCCGGTCAATAAAATACACAAAATCGTATTTTTCGGTTGATTTTCGGTCATTTTAATCATTTTTCAGGAGTTACTTTTTCATAAATACTCCTTTTTTTCAATAAATAGGGGTACTATTTAAGTTTGATGTTCACAGCCAGTTTTTGAAAGGTTCTCAGTCTAAAAAAATTATTTATTGATAGAATAATATTGTAAAAACAATATTGTCTGTTCCACTAAAATCATTTAATCTTGAAAAAATGGTATGAATAGGTAGAGCTAAAAATGTACTGTATGGTGTCCAAAAAAGATGAGTTTTCAGCTCATAGTAGTTGAGAAATTTGAGTYCAAAGTTGTTTACCTCTCAAAAGCAGGTAAATCATTCGAGAAAAGGAAAACAATGTTCCGTACATTTACACGCGACCATTTTCGGTTTGGTGAAAAATTAATTCGATTTTTTGGAAGTAAATGATTTTCCTAGATAAAAGTTCAACATCATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31566</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>656776</contig_pos>
        <strand></strand>
        <context>ctttgatcag[C/T]ttgaaatgtt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAG</left_flank>
        <right_flank>TTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGAGAAAAAAGAGATACACCAAAACTGAAAAACTCTGAGAAAAAAAAAGAAAAAGAGGGAAATCTGCAAAAAAAGAGAACCAGAAAAAAGGGAACTTTATTGAATTGCACATCCTTTTAAGACGTCACGGCTTTCCGCAATGTTATGTGAGACGAATTCGCTTAAAAAGGTTTTCCTTTTCAAATGAAATTTCGTTTTTCTATGAATGAGCCAATTAGGTTTCAAGATGCATCGGAAACCTGGGAAATCTGGAATTTAAAGACTTTCAGAATAATTTGTTTTCAGTTCATGCCGTGTTTCTCCGCGAATAATTTTGATGTCGCACTTCAGAAGTTTATCAAAGAACAACAAGAAAAAGAAGCAATAGGTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAAGGTTGAAAACCTCTTTTCACCTTCACTCGTCTTTCCCCCATCTCTCATATCTTCTATTTTAGGAAACGAGGTGGTAAAGTCAAGAGAAATTGAGGCTGAGAAAAAATTGTTGCAGCAATTAGATGCCAAT</canonical>
            <polymorphic>CGGAGAAAAAAGAGATACACCAAAACTGAAAAACTCTGAGAAAAAAAAAGAAAAAGAGGGAAATCTGCAAAAAAAGAGAACCAGAAAAAAGGGAACTTTATTGAATTGCACATCCTTTTAAGACGTCACGGCTTTCCGCAATGTTATGTGAGACGAATTCGCTTAAAAAGGTTTTCCTTTTCAAATGAAATTTCGTTTTTCTATGAATGAGCCAATTAGGTTTCAAGATGCATCGGAAACCTGGGAAATCTGGAATTTAAAGACTTTCAGAATAATTTGTTTTCAGTTCATGCCGTGTTTCTCCGCGAATAATTTTGATGTCGCACTTCAGAAGTTTATCAAAGAACAACAAGAAAAAGAAGCAATAGGTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGYTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAAGGTTGAAAACCTCTTTTCACCTTCACTCGTCTTTCCCCCATCTCTCATATCTTCTATTTTAGGAAACGAGGTGGTAAAGTCAAGAGAAATTGAGGCTGAGAAAAAATTGTTGCAGCAATTAGATGCCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>373 321 172 102 24 8</canonical_bands>
                <polymorphic_bands>373 321 196 102 8</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>286 162 131 104 102 80 68 35 24 8</canonical_bands>
                <polymorphic_bands>286 162 131 128 102 80 68 35 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGAGCTGGAGTTTTGACAC</pcr_primer_p1>
		<pcr_primer_p2>TTGCACTTTTGAAGAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>502</pcr_amplicon_size>
		<canonical_amplicon>GTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAA</canonical_amplicon>
		<polymorphic_amplicon>GTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGYTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31567</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>656883</contig_pos>
        <strand></strand>
        <context>ctgaaagccc[A/C]cttttttggt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCC</left_flank>
        <right_flank>CTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCACATCCTTTTAAGACGTCACGGCTTTCCGCAATGTTATGTGAGACGAATTCGCTTAAAAAGGTTTTCCTTTTCAAATGAAATTTCGTTTTTCTATGAATGAGCCAATTAGGTTTCAAGATGCATCGGAAACCTGGGAAATCTGGAATTTAAAGACTTTCAGAATAATTTGTTTTCAGTTCATGCCGTGTTTCTCCGCGAATAATTTTGATGTCGCACTTCAGAAGTTTATCAAAGAACAACAAGAAAAAGAAGCAATAGGTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAAGGTTGAAAACCTCTTTTCACCTTCACTCGTCTTTCCCCCATCTCTCATATCTTCTATTTTAGGAAACGAGGTGGTAAAGTCAAGAGAAATTGAGGCTGAGAAAAAATTGTTGCAGCAATTAGATGCCAATCCAACCGTTTTAGAATTTCGTAAGATCAAGGGGCTCCGGGATTATTACAAAAAATTATTATTTCAGCTCAAAAAGCAATGAACGAAAATAACAAAAACTCAGTGGAA</canonical>
            <polymorphic>GCACATCCTTTTAAGACGTCACGGCTTTCCGCAATGTTATGTGAGACGAATTCGCTTAAAAAGGTTTTCCTTTTCAAATGAAATTTCGTTTTTCTATGAATGAGCCAATTAGGTTTCAAGATGCATCGGAAACCTGGGAAATCTGGAATTTAAAGACTTTCAGAATAATTTGTTTTCAGTTCATGCCGTGTTTCTCCGCGAATAATTTTGATGTCGCACTTCAGAAGTTTATCAAAGAACAACAAGAAAAAGAAGCAATAGGTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCMCTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAAGGTTGAAAACCTCTTTTCACCTTCACTCGTCTTTCCCCCATCTCTCATATCTTCTATTTTAGGAAACGAGGTGGTAAAGTCAAGAGAAATTGAGGCTGAGAAAAAATTGTTGCAGCAATTAGATGCCAATCCAACCGTTTTAGAATTTCGTAAGATCAAGGGGCTCCGGGATTATTACAAAAAATTATTATTTCAGCTCAAAAAGCAATGAACGAAAATAACAAAAACTCAGTGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>BstXI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>161 147 130 123 89 66 48 46 33 31 28 22 22 18 16 8 6 3 3</canonical_bands>
                <polymorphic_bands>161 147 130 123 120 66 48 46 33 28 22 22 18 16 8 6 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGAGCTGGAGTTTTGACAC</pcr_primer_p1>
		<pcr_primer_p2>TTGCACTTTTGAAGAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>502</pcr_amplicon_size>
		<canonical_amplicon>GTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAA</canonical_amplicon>
		<polymorphic_amplicon>GTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCMCTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31568</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>656894</contig_pos>
        <strand></strand>
        <context>cttttttggt[A/C]cgtttggttc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGT</left_flank>
        <right_flank>CGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAA</right_flank>
        <qual_score>47</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAGACGTCACGGCTTTCCGCAATGTTATGTGAGACGAATTCGCTTAAAAAGGTTTTCCTTTTCAAATGAAATTTCGTTTTTCTATGAATGAGCCAATTAGGTTTCAAGATGCATCGGAAACCTGGGAAATCTGGAATTTAAAGACTTTCAGAATAATTTGTTTTCAGTTCATGCCGTGTTTCTCCGCGAATAATTTTGATGTCGCACTTCAGAAGTTTATCAAAGAACAACAAGAAAAAGAAGCAATAGGTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAAGGTTGAAAACCTCTTTTCACCTTCACTCGTCTTTCCCCCATCTCTCATATCTTCTATTTTAGGAAACGAGGTGGTAAAGTCAAGAGAAATTGAGGCTGAGAAAAAATTGTTGCAGCAATTAGATGCCAATCCAACCGTTTTAGAATTTCGTAAGATCAAGGGGCTCCGGGATTATTACAAAAAATTATTATTTCAGCTCAAAAAGCAATGAACGAAAATAACAAAAACTCAGTGGAATTCTTTGGACC</canonical>
            <polymorphic>TAAGACGTCACGGCTTTCCGCAATGTTATGTGAGACGAATTCGCTTAAAAAGGTTTTCCTTTTCAAATGAAATTTCGTTTTTCTATGAATGAGCCAATTAGGTTTCAAGATGCATCGGAAACCTGGGAAATCTGGAATTTAAAGACTTTCAGAATAATTTGTTTTCAGTTCATGCCGTGTTTCTCCGCGAATAATTTTGATGTCGCACTTCAGAAGTTTATCAAAGAACAACAAGAAAAAGAAGCAATAGGTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTMCGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAAGGTTGAAAACCTCTTTTCACCTTCACTCGTCTTTCCCCCATCTCTCATATCTTCTATTTTAGGAAACGAGGTGGTAAAGTCAAGAGAAATTGAGGCTGAGAAAAAATTGTTGCAGCAATTAGATGCCAATCCAACCGTTTTAGAATTTCGTAAGATCAAGGGGCTCCGGGATTATTACAAAAAATTATTATTTCAGCTCAAAAAGCAATGAACGAAAATAACAAAAACTCAGTGGAATTCTTTGGACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 274 227</canonical_bands>
                <polymorphic_bands>726 274</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>495 300 184 16 5</canonical_bands>
                <polymorphic_bands>511 300 184 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGAGCTGGAGTTTTGACAC</pcr_primer_p1>
		<pcr_primer_p2>TTGCACTTTTGAAGAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>502</pcr_amplicon_size>
		<canonical_amplicon>GTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAA</canonical_amplicon>
		<polymorphic_amplicon>GTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTMCGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31569</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>656922</contig_pos>
        <strand></strand>
        <context>gtgaaactct[C/T]stgtttttaw</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCT</left_flank>
        <right_flank>CTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAA</right_flank>
        <qual_score>46</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGAGACGAATTCGCTTAAAAAGGTTTTCCTTTTCAAATGAAATTTCGTTTTTCTATGAATGAGCCAATTAGGTTTCAAGATGCATCGGAAACCTGGGAAATCTGGAATTTAAAGACTTTCAGAATAATTTGTTTTCAGTTCATGCCGTGTTTCTCCGCGAATAATTTTGATGTCGCACTTCAGAAGTTTATCAAAGAACAACAAGAAAAAGAAGCAATAGGTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAAGGTTGAAAACCTCTTTTCACCTTCACTCGTCTTTCCCCCATCTCTCATATCTTCTATTTTAGGAAACGAGGTGGTAAAGTCAAGAGAAATTGAGGCTGAGAAAAAATTGTTGCAGCAATTAGATGCCAATCCAACCGTTTTAGAATTTCGTAAGATCAAGGGGCTCCGGGATTATTACAAAAAATTATTATTTCAGCTCAAAAAGCAATGAACGAAAATAACAAAAACTCAGTGGAATTCTTTGGACCTCCGCAACCACCTCAGCAAGTACATCGC</canonical>
            <polymorphic>TGTGAGACGAATTCGCTTAAAAAGGTTTTCCTTTTCAAATGAAATTTCGTTTTTCTATGAATGAGCCAATTAGGTTTCAAGATGCATCGGAAACCTGGGAAATCTGGAATTTAAAGACTTTCAGAATAATTTGTTTTCAGTTCATGCCGTGTTTCTCCGCGAATAATTTTGATGTCGCACTTCAGAAGTTTATCAAAGAACAACAAGAAAAAGAAGCAATAGGTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTYCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAAGGTTGAAAACCTCTTTTCACCTTCACTCGTCTTTCCCCCATCTCTCATATCTTCTATTTTAGGAAACGAGGTGGTAAAGTCAAGAGAAATTGAGGCTGAGAAAAAATTGTTGCAGCAATTAGATGCCAATCCAACCGTTTTAGAATTTCGTAAGATCAAGGGGCTCCGGGATTATTACAAAAAATTATTATTTCAGCTCAAAAAGCAATGAACGAAAATAACAAAAACTCAGTGGAATTCTTTGGACCTCCGCAACCACCTCAGCAAGTACATCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGAGCTGGAGTTTTGACAC</pcr_primer_p1>
		<pcr_primer_p2>TTGCACTTTTGAAGAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>502</pcr_amplicon_size>
		<canonical_amplicon>GTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAA</canonical_amplicon>
		<polymorphic_amplicon>GTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTYCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31570</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>656923</contig_pos>
        <strand></strand>
        <context>tgaaactcty[C/G]tgtttttawg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTC</left_flank>
        <right_flank>TGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAA</right_flank>
        <qual_score>46</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGAGACGAATTCGCTTAAAAAGGTTTTCCTTTTCAAATGAAATTTCGTTTTTCTATGAATGAGCCAATTAGGTTTCAAGATGCATCGGAAACCTGGGAAATCTGGAATTTAAAGACTTTCAGAATAATTTGTTTTCAGTTCATGCCGTGTTTCTCCGCGAATAATTTTGATGTCGCACTTCAGAAGTTTATCAAAGAACAACAAGAAAAAGAAGCAATAGGTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAAGGTTGAAAACCTCTTTTCACCTTCACTCGTCTTTCCCCCATCTCTCATATCTTCTATTTTAGGAAACGAGGTGGTAAAGTCAAGAGAAATTGAGGCTGAGAAAAAATTGTTGCAGCAATTAGATGCCAATCCAACCGTTTTAGAATTTCGTAAGATCAAGGGGCTCCGGGATTATTACAAAAAATTATTATTTCAGCTCAAAAAGCAATGAACGAAAATAACAAAAACTCAGTGGAATTCTTTGGACCTCCGCAACCACCTCAGCAAGTACATCGCC</canonical>
            <polymorphic>GTGAGACGAATTCGCTTAAAAAGGTTTTCCTTTTCAAATGAAATTTCGTTTTTCTATGAATGAGCCAATTAGGTTTCAAGATGCATCGGAAACCTGGGAAATCTGGAATTTAAAGACTTTCAGAATAATTTGTTTTCAGTTCATGCCGTGTTTCTCCGCGAATAATTTTGATGTCGCACTTCAGAAGTTTATCAAAGAACAACAAGAAAAAGAAGCAATAGGTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCSTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAAGGTTGAAAACCTCTTTTCACCTTCACTCGTCTTTCCCCCATCTCTCATATCTTCTATTTTAGGAAACGAGGTGGTAAAGTCAAGAGAAATTGAGGCTGAGAAAAAATTGTTGCAGCAATTAGATGCCAATCCAACCGTTTTAGAATTTCGTAAGATCAAGGGGCTCCGGGATTATTACAAAAAATTATTATTTCAGCTCAAAAAGCAATGAACGAAAATAACAAAAACTCAGTGGAATTCTTTGGACCTCCGCAACCACCTCAGCAAGTACATCGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGAGCTGGAGTTTTGACAC</pcr_primer_p1>
		<pcr_primer_p2>TTGCACTTTTGAAGAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>502</pcr_amplicon_size>
		<canonical_amplicon>GTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAA</canonical_amplicon>
		<polymorphic_amplicon>GTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCSTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31571</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>656932</contig_pos>
        <strand></strand>
        <context>ystgttttta[A/T]gaaatcgtca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTA</left_flank>
        <right_flank>GAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCGCTTAAAAAGGTTTTCCTTTTCAAATGAAATTTCGTTTTTCTATGAATGAGCCAATTAGGTTTCAAGATGCATCGGAAACCTGGGAAATCTGGAATTTAAAGACTTTCAGAATAATTTGTTTTCAGTTCATGCCGTGTTTCTCCGCGAATAATTTTGATGTCGCACTTCAGAAGTTTATCAAAGAACAACAAGAAAAAGAAGCAATAGGTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAAGGTTGAAAACCTCTTTTCACCTTCACTCGTCTTTCCCCCATCTCTCATATCTTCTATTTTAGGAAACGAGGTGGTAAAGTCAAGAGAAATTGAGGCTGAGAAAAAATTGTTGCAGCAATTAGATGCCAATCCAACCGTTTTAGAATTTCGTAAGATCAAGGGGCTCCGGGATTATTACAAAAAATTATTATTTCAGCTCAAAAAGCAATGAACGAAAATAACAAAAACTCAGTGGAATTCTTTGGACCTCCGCAACCACCTCAGCAAGTACATCGCCAGGCACCTC</canonical>
            <polymorphic>ATTCGCTTAAAAAGGTTTTCCTTTTCAAATGAAATTTCGTTTTTCTATGAATGAGCCAATTAGGTTTCAAGATGCATCGGAAACCTGGGAAATCTGGAATTTAAAGACTTTCAGAATAATTTGTTTTCAGTTCATGCCGTGTTTCTCCGCGAATAATTTTGATGTCGCACTTCAGAAGTTTATCAAAGAACAACAAGAAAAAGAAGCAATAGGTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAWGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAAGGTTGAAAACCTCTTTTCACCTTCACTCGTCTTTCCCCCATCTCTCATATCTTCTATTTTAGGAAACGAGGTGGTAAAGTCAAGAGAAATTGAGGCTGAGAAAAAATTGTTGCAGCAATTAGATGCCAATCCAACCGTTTTAGAATTTCGTAAGATCAAGGGGCTCCGGGATTATTACAAAAAATTATTATTTCAGCTCAAAAAGCAATGAACGAAAATAACAAAAACTCAGTGGAATTCTTTGGACCTCCGCAACCACCTCAGCAAGTACATCGCCAGGCACCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>503 216 180 94 7</canonical_bands>
                <polymorphic_bands>719 180 94 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGAGCTGGAGTTTTGACAC</pcr_primer_p1>
		<pcr_primer_p2>TTGCACTTTTGAAGAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>502</pcr_amplicon_size>
		<canonical_amplicon>GTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAA</canonical_amplicon>
		<polymorphic_amplicon>GTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAWGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31572</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>657004</contig_pos>
        <strand></strand>
        <context>caatttaggt[C/A]tgttttacac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGT</left_flank>
        <right_flank>TGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCATCGGAAACCTGGGAAATCTGGAATTTAAAGACTTTCAGAATAATTTGTTTTCAGTTCATGCCGTGTTTCTCCGCGAATAATTTTGATGTCGCACTTCAGAAGTTTATCAAAGAACAACAAGAAAAAGAAGCAATAGGTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAAGGTTGAAAACCTCTTTTCACCTTCACTCGTCTTTCCCCCATCTCTCATATCTTCTATTTTAGGAAACGAGGTGGTAAAGTCAAGAGAAATTGAGGCTGAGAAAAAATTGTTGCAGCAATTAGATGCCAATCCAACCGTTTTAGAATTTCGTAAGATCAAGGGGCTCCGGGATTATTACAAAAAATTATTATTTCAGCTCAAAAAGCAATGAACGAAAATAACAAAAACTCAGTGGAATTCTTTGGACCTCCGCAACCACCTCAGCAAGTACATCGCCAGGCACCTCCTCAAGCAATTCCTAGAATATCACAAACTTTGTACACTTTCTAAACTCATCTTTTCTTGAAATTTGAAATTC</canonical>
            <polymorphic>TGCATCGGAAACCTGGGAAATCTGGAATTTAAAGACTTTCAGAATAATTTGTTTTCAGTTCATGCCGTGTTTCTCCGCGAATAATTTTGATGTCGCACTTCAGAAGTTTATCAAAGAACAACAAGAAAAAGAAGCAATAGGTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTMTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAAGGTTGAAAACCTCTTTTCACCTTCACTCGTCTTTCCCCCATCTCTCATATCTTCTATTTTAGGAAACGAGGTGGTAAAGTCAAGAGAAATTGAGGCTGAGAAAAAATTGTTGCAGCAATTAGATGCCAATCCAACCGTTTTAGAATTTCGTAAGATCAAGGGGCTCCGGGATTATTACAAAAAATTATTATTTCAGCTCAAAAAGCAATGAACGAAAATAACAAAAACTCAGTGGAATTCTTTGGACCTCCGCAACCACCTCAGCAAGTACATCGCCAGGCACCTCCTCAAGCAATTCCTAGAATATCACAAACTTTGTACACTTTCTAAACTCATCTTTTCTTGAAATTTGAAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGAGCTGGAGTTTTGACAC</pcr_primer_p1>
		<pcr_primer_p2>TTGCACTTTTGAAGAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>502</pcr_amplicon_size>
		<canonical_amplicon>GTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAA</canonical_amplicon>
		<polymorphic_amplicon>GTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTMTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31573</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>657093</contig_pos>
        <strand></strand>
        <context>aactgacaaa[G/A]acgtttttga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAA</left_flank>
        <right_flank>ACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTG</right_flank>
        <qual_score>50</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTCGCACTTCAGAAGTTTATCAAAGAACAACAAGAAAAAGAAGCAATAGGTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAAGGTTGAAAACCTCTTTTCACCTTCACTCGTCTTTCCCCCATCTCTCATATCTTCTATTTTAGGAAACGAGGTGGTAAAGTCAAGAGAAATTGAGGCTGAGAAAAAATTGTTGCAGCAATTAGATGCCAATCCAACCGTTTTAGAATTTCGTAAGATCAAGGGGCTCCGGGATTATTACAAAAAATTATTATTTCAGCTCAAAAAGCAATGAACGAAAATAACAAAAACTCAGTGGAATTCTTTGGACCTCCGCAACCACCTCAGCAAGTACATCGCCAGGCACCTCCTCAAGCAATTCCTAGAATATCACAAACTTTGTACACTTTCTAAACTCATCTTTTCTTGAAATTTGAAATTCAGAATTTATTTATTTCCACCAGATCTTCATTTTTACTTATTTTCCGTTCTTCTCACAAGTTTTCTTAACTTCTAAAATTTCCTTTTCCT</canonical>
            <polymorphic>ATGTCGCACTTCAGAAGTTTATCAAAGAACAACAAGAAAAAGAAGCAATAGGTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAARACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAAGGTTGAAAACCTCTTTTCACCTTCACTCGTCTTTCCCCCATCTCTCATATCTTCTATTTTAGGAAACGAGGTGGTAAAGTCAAGAGAAATTGAGGCTGAGAAAAAATTGTTGCAGCAATTAGATGCCAATCCAACCGTTTTAGAATTTCGTAAGATCAAGGGGCTCCGGGATTATTACAAAAAATTATTATTTCAGCTCAAAAAGCAATGAACGAAAATAACAAAAACTCAGTGGAATTCTTTGGACCTCCGCAACCACCTCAGCAAGTACATCGCCAGGCACCTCCTCAAGCAATTCCTAGAATATCACAAACTTTGTACACTTTCTAAACTCATCTTTTCTTGAAATTTGAAATTCAGAATTTATTTATTTCCACCAGATCTTCATTTTTACTTATTTTCCGTTCTTCTCACAAGTTTTCTTAACTTCTAAAATTTCCTTTTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGAGCTGGAGTTTTGACAC</pcr_primer_p1>
		<pcr_primer_p2>TTGCACTTTTGAAGAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>502</pcr_amplicon_size>
		<canonical_amplicon>GTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAA</canonical_amplicon>
		<polymorphic_amplicon>GTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAARACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31574</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>657111</contig_pos>
        <strand></strand>
        <context>tgaatatttt[G/T]ttgaccggta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTT</left_flank>
        <right_flank>TTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAAGGTTGAAAACCTCTT</right_flank>
        <qual_score>50</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATCAAAGAACAACAAGAAAAAGAAGCAATAGGTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAAGGTTGAAAACCTCTTTTCACCTTCACTCGTCTTTCCCCCATCTCTCATATCTTCTATTTTAGGAAACGAGGTGGTAAAGTCAAGAGAAATTGAGGCTGAGAAAAAATTGTTGCAGCAATTAGATGCCAATCCAACCGTTTTAGAATTTCGTAAGATCAAGGGGCTCCGGGATTATTACAAAAAATTATTATTTCAGCTCAAAAAGCAATGAACGAAAATAACAAAAACTCAGTGGAATTCTTTGGACCTCCGCAACCACCTCAGCAAGTACATCGCCAGGCACCTCCTCAAGCAATTCCTAGAATATCACAAACTTTGTACACTTTCTAAACTCATCTTTTCTTGAAATTTGAAATTCAGAATTTATTTATTTCCACCAGATCTTCATTTTTACTTATTTTCCGTTCTTCTCACAAGTTTTCTTAACTTCTAAAATTTCCTTTTCCTGATTTCAGTATTTGTAAA</canonical>
            <polymorphic>TTATCAAAGAACAACAAGAAAAAGAAGCAATAGGTGAGCTGGAGTTTTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTKTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAAGGTTGAAAACCTCTTTTCACCTTCACTCGTCTTTCCCCCATCTCTCATATCTTCTATTTTAGGAAACGAGGTGGTAAAGTCAAGAGAAATTGAGGCTGAGAAAAAATTGTTGCAGCAATTAGATGCCAATCCAACCGTTTTAGAATTTCGTAAGATCAAGGGGCTCCGGGATTATTACAAAAAATTATTATTTCAGCTCAAAAAGCAATGAACGAAAATAACAAAAACTCAGTGGAATTCTTTGGACCTCCGCAACCACCTCAGCAAGTACATCGCCAGGCACCTCCTCAAGCAATTCCTAGAATATCACAAACTTTGTACACTTTCTAAACTCATCTTTTCTTGAAATTTGAAATTCAGAATTTATTTATTTCCACCAGATCTTCATTTTTACTTATTTTCCGTTCTTCTCACAAGTTTTCTTAACTTCTAAAATTTCCTTTTCCTGATTTCAGTATTTGTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>369 353 145 133</canonical_bands>
                <polymorphic_bands>486 369 145</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGACACAAAAGTGGAACATT</pcr_primer_p1>
		<pcr_primer_p2>GAGTGAAGGTGAAAAGAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>517</pcr_amplicon_size>
		<canonical_amplicon>TTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAAGGTTGAAAACCTCTTTTCACCTTCACTC</canonical_amplicon>
		<polymorphic_amplicon>TTGACACAAAAGTGGAACATTGGTCAATCAAACATACAAAAACGCATTTTTCAGTTTAATTTTGCCAATTTTGACAATTTTTAGGAGTCTGGAGCTTGTCTGGCATGCCTTTGATCAGCTTGAAATGTTGTAGGGTGTAGAACAAACCTAGATTGAAAACTTCGCATTTACAGAATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTKTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAAGGTTGAAAACCTCTTTTCACCTTCACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31575</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>657331</contig_pos>
        <strand>+</strand>
        <context>TTACAAAAAA[C/T]TATTATTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGTTTTAGAATTTCGTAAGATCAAGGGGCTCCGGGATTATTACAAAAAA</left_flank>
        <right_flank>TATTATTTCAGCTCAAAAAGCAATGAACGAAAATAACAAAAACTCAGTGG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAAGGTTGAAAACCTCTTTTCACCTTCACTCGTCTTTCCCCCATCTCTCATATCTTCTATTTTAGGAAACGAGGTGGTAAAGTCAAGAGAAATTGAGGCTGAGAAAAAATTGTTGCAGCAATTAGATGCCAATCCAACCGTTTTAGAATTTCGTAAGATCAAGGGGCTCCGGGATTATTACAAAAAATTATTATTTCAGCTCAAAAAGCAATGAACGAAAATAACAAAAACTCAGTGGAATTCTTTGGACCTCCGCAACCACCTCAGCAAGTACATCGCCAGGCACCTCCTCAAGCAATTCCTAGAATATCACAAACTTTGTACACTTTCTAAACTCATCTTTTCTTGAAATTTGAAATTCAGAATTTATTTATTTCCACCAGATCTTCATTTTTACTTATTTTCCGTTCTTCTCACAAGTTTTCTTAACTTCTAAAATTTCCTTTTCCTGATTTCAGTATTTGTAAATACAGTTTTCCAATAAACTCTCAACACTTTATCGTTGTTTTCTACGTTTCGATACATTTTGATTGTAAACAAGTCTCTATTGAGTTCTTGGCCTTCACCACAACAACATTAGGAACCAAAATTACTTGTTATCAAAAAGACGGCGTTTTTTGATCCATGGCTGAATTGAAGATAGAGAATACGGTAGGCCTTGGGTCGGTTGAGAAATCTGTAAACAACA</canonical>
            <polymorphic>ATACTGCAAAAATTTCTAGTTTTTCAGATATTTCCCGATATCTGAAAGCCCACTTTTTTGGTACGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAAGGTTGAAAACCTCTTTTCACCTTCACTCGTCTTTCCCCCATCTCTCATATCTTCTATTTTAGGAAACGAGGTGGTAAAGTCAAGAGAAATTGAGGCTGAGAAAAAATTGTTGCAGCAATTAGATGCCAATCCAACCGTTTTAGAATTTCGTAAGATCAAGGGGCTCCGGGATTATTACAAAAAAYTATTATTTCAGCTCAAAAAGCAATGAACGAAAATAACAAAAACTCAGTGGAATTCTTTGGACCTCCGCAACCACCTCAGCAAGTACATCGCCAGGCACCTCCTCAAGCAATTCCTAGAATATCACAAACTTTGTACACTTTCTAAACTCATCTTTTCTTGAAATTTGAAATTCAGAATTTATTTATTTCCACCAGATCTTCATTTTTACTTATTTTCCGTTCTTCTCACAAGTTTTCTTAACTTCTAAAATTTCCTTTTCCTGATTTCAGTATTTGTAAATACAGTTTTCCAATAAACTCTCAACACTTTATCGTTGTTTTCTACGTTTCGATACATTTTGATTGTAAACAAGTCTCTATTGAGTTCTTGGCCTTCACCACAACAACATTAGGAACCAAAATTACTTGTTATCAAAAAGACGGCGTTTTTTGATCCATGGCTGAATTGAAGATAGAGAATACGGTAGGCCTTGGGTCGGTTGAGAAATCTGTAAACAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>213 151 119 73 58 57 53 53 44 39 27 26 17 16 12 11 10 7 7 7</canonical_bands>
                <polymorphic_bands>213 151 119 92 73 58 57 53 44 27 26 17 16 12 11 10 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGTGGTAAAGTCAAGAGAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAGTTTGTGATATTCTAGGAATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGGTGGTAAAGTCAAGAGAAATTGAGGCTGAGAAAAAATTGTTGCAGCAATTAGATGCCAATCCAACCGTTTTAGAATTTCGTAAGATCAAGGGGCTCCGGGATTATTACAAAAAATTATTATTTCAGCTCAAAAAGCAATGAACGAAAATAACAAAAACTCAGTGGAATTCTTTGGACCTCCGCAACCACCTCAGCAAGTACATCGCCAGGCACCTCCTCAAGCAATTCCTAGAATATCACAAACTTT</canonical_amplicon>
		<polymorphic_amplicon>GAGGTGGTAAAGTCAAGAGAAATTGAGGCTGAGAAAAAATTGTTGCAGCAATTAGATGCCAATCCAACCGTTTTAGAATTTCGTAAGATCAAGGGGCTCCGGGATTATTACAAAAAAYTATTATTTCAGCTCAAAAAGCAATGAACGAAAATAACAAAAACTCAGTGGAATTCTTTGGACCTCCGCAACCACCTCAGCAAGTACATCGCCAGGCACCTCCTCAAGCAATTCCTAGAATATCACAAACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31576</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>657394</contig_pos>
        <strand>+</strand>
        <context>TTCTTTGGAC[A/C]TCYGCAACCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCAAAAAGCAATGAACGAAAATAACAAAAACTCAGTGGAATTCTTTGGAC</left_flank>
        <right_flank>TCCGCAACCACCTCAGCAAGTACATCGCCAGGCACCTCCTCAAGCAATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAAGGTTGAAAACCTCTTTTCACCTTCACTCGTCTTTCCCCCATCTCTCATATCTTCTATTTTAGGAAACGAGGTGGTAAAGTCAAGAGAAATTGAGGCTGAGAAAAAATTGTTGCAGCAATTAGATGCCAATCCAACCGTTTTAGAATTTCGTAAGATCAAGGGGCTCCGGGATTATTACAAAAAATTATTATTTCAGCTCAAAAAGCAATGAACGAAAATAACAAAAACTCAGTGGAATTCTTTGGACCTCCGCAACCACCTCAGCAAGTACATCGCCAGGCACCTCCTCAAGCAATTCCTAGAATATCACAAACTTTGTACACTTTCTAAACTCATCTTTTCTTGAAATTTGAAATTCAGAATTTATTTATTTCCACCAGATCTTCATTTTTACTTATTTTCCGTTCTTCTCACAAGTTTTCTTAACTTCTAAAATTTCCTTTTCCTGATTTCAGTATTTGTAAATACAGTTTTCCAATAAACTCTCAACACTTTATCGTTGTTTTCTACGTTTCGATACATTTTGATTGTAAACAAGTCTCTATTGAGTTCTTGGCCTTCACCACAACAACATTAGGAACCAAAATTACTTGTTATCAAAAAGACGGCGTTTTTTGATCCATGGCTGAATTGAAGATAGAGAATACGGTAGGCCTTGGGTCGGTTGAGAAATCTGTAAACAACAGTGCAAAATTTATTTAGGTCAAGGGTTTCGATGATGTCGTGTACCCATATGTTTTGAGATTTT</canonical>
            <polymorphic>CGTTTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAAGGTTGAAAACCTCTTTTCACCTTCACTCGTCTTTCCCCCATCTCTCATATCTTCTATTTTAGGAAACGAGGTGGTAAAGTCAAGAGAAATTGAGGCTGAGAAAAAATTGTTGCAGCAATTAGATGCCAATCCAACCGTTTTAGAATTTCGTAAGATCAAGGGGCTCCGGGATTATTACAAAAAATTATTATTTCAGCTCAAAAAGCAATGAACGAAAATAACAAAAACTCAGTGGAATTCTTTGGACMTCCGCAACCACCTCAGCAAGTACATCGCCAGGCACCTCCTCAAGCAATTCCTAGAATATCACAAACTTTGTACACTTTCTAAACTCATCTTTTCTTGAAATTTGAAATTCAGAATTTATTTATTTCCACCAGATCTTCATTTTTACTTATTTTCCGTTCTTCTCACAAGTTTTCTTAACTTCTAAAATTTCCTTTTCCTGATTTCAGTATTTGTAAATACAGTTTTCCAATAAACTCTCAACACTTTATCGTTGTTTTCTACGTTTCGATACATTTTGATTGTAAACAAGTCTCTATTGAGTTCTTGGCCTTCACCACAACAACATTAGGAACCAAAATTACTTGTTATCAAAAAGACGGCGTTTTTTGATCCATGGCTGAATTGAAGATAGAGAATACGGTAGGCCTTGGGTCGGTTGAGAAATCTGTAAACAACAGTGCAAAATTTATTTAGGTCAAGGGTTTCGATGATGTCGTGTACCCATATGTTTTGAGATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTTTTAGAATTTCGTAAGATCA</pcr_primer_p1>
		<pcr_primer_p2>TGAAGATCTGGTGGAAATAAATA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGTTTTAGAATTTCGTAAGATCAAGGGGCTCCGGGATTATTACAAAAAATTATTATTTCAGCTCAAAAAGCAATGAACGAAAATAACAAAAACTCAGTGGAATTCTTTGGACCTCCGCAACCACCTCAGCAAGTACATCGCCAGGCACCTCCTCAAGCAATTCCTAGAATATCACAAACTTTGTACACTTTCTAAACTCATCTTTTCTTGAAATTTGAAATTCAGAATTTATTTATTTCCACCAGATCTTCA</canonical_amplicon>
		<polymorphic_amplicon>CGTTTTAGAATTTCGTAAGATCAAGGGGCTCCGGGATTATTACAAAAAATTATTATTTCAGCTCAAAAAGCAATGAACGAAAATAACAAAAACTCAGTGGAATTCTTTGGACMTCCGCAACCACCTCAGCAAGTACATCGCCAGGCACCTCCTCAAGCAATTCCTAGAATATCACAAACTTTGTACACTTTCTAAACTCATCTTTTCTTGAAATTTGAAATTCAGAATTTATTTATTTCCACCAGATCTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31577</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>657397</contig_pos>
        <strand>+</strand>
        <context>TTTGGACMTC[C/T]GCAACCACCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAGCAATGAACGAAAATAACAAAAACTCAGTGGAATTCTTTGGACCTC</left_flank>
        <right_flank>GCAACCACCTCAGCAAGTACATCGCCAGGCACCTCCTCAAGCAATTCCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAAGGTTGAAAACCTCTTTTCACCTTCACTCGTCTTTCCCCCATCTCTCATATCTTCTATTTTAGGAAACGAGGTGGTAAAGTCAAGAGAAATTGAGGCTGAGAAAAAATTGTTGCAGCAATTAGATGCCAATCCAACCGTTTTAGAATTTCGTAAGATCAAGGGGCTCCGGGATTATTACAAAAAATTATTATTTCAGCTCAAAAAGCAATGAACGAAAATAACAAAAACTCAGTGGAATTCTTTGGACCTCCGCAACCACCTCAGCAAGTACATCGCCAGGCACCTCCTCAAGCAATTCCTAGAATATCACAAACTTTGTACACTTTCTAAACTCATCTTTTCTTGAAATTTGAAATTCAGAATTTATTTATTTCCACCAGATCTTCATTTTTACTTATTTTCCGTTCTTCTCACAAGTTTTCTTAACTTCTAAAATTTCCTTTTCCTGATTTCAGTATTTGTAAATACAGTTTTCCAATAAACTCTCAACACTTTATCGTTGTTTTCTACGTTTCGATACATTTTGATTGTAAACAAGTCTCTATTGAGTTCTTGGCCTTCACCACAACAACATTAGGAACCAAAATTACTTGTTATCAAAAAGACGGCGTTTTTTGATCCATGGCTGAATTGAAGATAGAGAATACGGTAGGCCTTGGGTCGGTTGAGAAATCTGTAAACAACAGTGCAAAATTTATTTAGGTCAAGGGTTTCGATGATGTCGTGTACCCATATGTTTTGAGATTTTTCG</canonical>
            <polymorphic>TTGGTTCTGAAAACGTGAAACTCTCCTGTTTTTAAGAAATCGTCAAATAGCTGAAAAGCTAGGAATTTTCAATAAATTCTGTGAACGCAAAATTATCAATTTAGGTCTGTTTTACACTTATCAAATTTTTCTGAAGGTTCAGAAACTTGACAGGCGAGCATCAGACTCCTGCAAATACCTGAAAAAACTGACAAAGACGTTTTTGAATATTTTGTTGACCGGTACTGTATGTTTTCTTCAAAAGTGCAAGGTTGAAAACCTCTTTTCACCTTCACTCGTCTTTCCCCCATCTCTCATATCTTCTATTTTAGGAAACGAGGTGGTAAAGTCAAGAGAAATTGAGGCTGAGAAAAAATTGTTGCAGCAATTAGATGCCAATCCAACCGTTTTAGAATTTCGTAAGATCAAGGGGCTCCGGGATTATTACAAAAAATTATTATTTCAGCTCAAAAAGCAATGAACGAAAATAACAAAAACTCAGTGGAATTCTTTGGACCTCYGCAACCACCTCAGCAAGTACATCGCCAGGCACCTCCTCAAGCAATTCCTAGAATATCACAAACTTTGTACACTTTCTAAACTCATCTTTTCTTGAAATTTGAAATTCAGAATTTATTTATTTCCACCAGATCTTCATTTTTACTTATTTTCCGTTCTTCTCACAAGTTTTCTTAACTTCTAAAATTTCCTTTTCCTGATTTCAGTATTTGTAAATACAGTTTTCCAATAAACTCTCAACACTTTATCGTTGTTTTCTACGTTTCGATACATTTTGATTGTAAACAAGTCTCTATTGAGTTCTTGGCCTTCACCACAACAACATTAGGAACCAAAATTACTTGTTATCAAAAAGACGGCGTTTTTTGATCCATGGCTGAATTGAAGATAGAGAATACGGTAGGCCTTGGGTCGGTTGAGAAATCTGTAAACAACAGTGCAAAATTTATTTAGGTCAAGGGTTTCGATGATGTCGTGTACCCATATGTTTTGAGATTTTTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTTTTAGAATTTCGTAAGATCA</pcr_primer_p1>
		<pcr_primer_p2>TGAAGATCTGGTGGAAATAAATA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGTTTTAGAATTTCGTAAGATCAAGGGGCTCCGGGATTATTACAAAAAATTATTATTTCAGCTCAAAAAGCAATGAACGAAAATAACAAAAACTCAGTGGAATTCTTTGGACCTCCGCAACCACCTCAGCAAGTACATCGCCAGGCACCTCCTCAAGCAATTCCTAGAATATCACAAACTTTGTACACTTTCTAAACTCATCTTTTCTTGAAATTTGAAATTCAGAATTTATTTATTTCCACCAGATCTTCA</canonical_amplicon>
		<polymorphic_amplicon>CGTTTTAGAATTTCGTAAGATCAAGGGGCTCCGGGATTATTACAAAAAATTATTATTTCAGCTCAAAAAGCAATGAACGAAAATAACAAAAACTCAGTGGAATTCTTTGGACCTCYGCAACCACCTCAGCAAGTACATCGCCAGGCACCTCCTCAAGCAATTCCTAGAATATCACAAACTTTGTACACTTTCTAAACTCATCTTTTCTTGAAATTTGAAATTCAGAATTTATTTATTTCCACCAGATCTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31578</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>667376</contig_pos>
        <strand>+</strand>
        <context>GCGAATTCTG[A/G]AAAAAAAGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGAAACTCTTCGTCGACGTCGGGAACGTCTTTTTCGTCGGCGAATTCTG</left_flank>
        <right_flank>AAAAAAAGGAGCTCAATCTAGGTTTTTAGTTTTCAAGCGAATTTAAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCACTGAAAACTTTTTTTAGCGTTTTAGAGCAAATGAGTGAGCTGAGAACGTTTGAAATCATGTTCTAGAAAAAATGCGCAAAATGCTTTTTCAAATCTTCTTGTTGCATTTTTCATCTGAAAAGCTTTACAGAAACTTAAGCACATTGATTAACAACATATTTTTATTAATTCAAAAAAGAAACCAAATCAATAGTGAGATGACAAAATAAGTCCCAAGAGTCCAACTTGTGGGATTTTGAAAATTATTCTTCCAGTTTGTCGTATTCTTCTCGACTGCTGGTTCAGCTCCAGGTTTGGTCACAGTTTTGTGCTTTTTTTCAGAAAATCATTAAACGCAGCTTTGCCTTCGTTGGTCAATAAACCTTTGCTGCTGTCGGCGTATTCTGGAAATTGCGTAGCTCCGGGCACAGTTTTCTGCTTTTTCAGAATATCATTGATAATTGCAAGAAACTCTTCGTCGACGTCGGGAACGTCTTTTTCGTCGGCGAATTCTGAAAAAAAAGGAGCTCAATCTAGGTTTTTAGTTTTCAAGCGAATTTAAAATTAGTTCAAAAATATGTTGAACTCACTGTGAAGTCCGCTTGTTGGTGGCGCACATTTCAATGCGGTTGATCTCCAAGCCGCGATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCCAGTTGCAGTTATTTTTGGTCATTCATTATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGAAAAAAATTAATTATCTTGTGAAGATTTTTAAGAAAATAATTTTGGAAATTACTTCACGTGAAAACTGATTTTATGACATATTTTCAAATGGTTTTAGGGAAGAAAAAGGGACAGAAATAAACAAAA</canonical>
            <polymorphic>CTTCACTGAAAACTTTTTTTAGCGTTTTAGAGCAAATGAGTGAGCTGAGAACGTTTGAAATCATGTTCTAGAAAAAATGCGCAAAATGCTTTTTCAAATCTTCTTGTTGCATTTTTCATCTGAAAAGCTTTACAGAAACTTAAGCACATTGATTAACAACATATTTTTATTAATTCAAAAAAGAAACCAAATCAATAGTGAGATGACAAAATAAGTCCCAAGAGTCCAACTTGTGGGATTTTGAAAATTATTCTTCCAGTTTGTCGTATTCTTCTCGACTGCTGGTTCAGCTCCAGGTTTGGTCACAGTTTTGTGCTTTTTTTCAGAAAATCATTAAACGCAGCTTTGCCTTCGTTGGTCAATAAACCTTTGCTGCTGTCGGCGTATTCTGGAAATTGCGTAGCTCCGGGCACAGTTTTCTGCTTTTTCAGAATATCATTGATAATTGCAAGAAACTCTTCGTCGACGTCGGGAACGTCTTTTTCGTCGGCGAATTCTGRAAAAAAAGGAGCTCAATCTAGGTTTTTAGTTTTCAAGCGAATTTAAAATTAGTTCAAAAATATGTTGAACTCACTGTGAAGTCCGCTTGTTGGTGGCGCACATTTCAATGCGGTTGATCTCCAAGCCGCGATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTAATCATCCAATCTTGGTTTTCGATTGTTTTGTCGTTCAATTCGATTTGTTTTTCATTGTTCATACGTATATAGTATACATCCATCATACGTATATAGTCCAGTTGCAGTTATTTTTGGTCATTCATTATTTCTTCGACAAGTTGAACAGTGTAACCTAAAAGATCATGATCATCAGCCATTTTCTGAAAGAAAAAAATTAATTATCTTGTGAAGATTTTTAAGAAAATAATTTTGGAAATTACTTCACGTGAAAACTGATTTTATGACATATTTTCAAATGGTTTTAGGGAAGAAAAAGGGACAGAAATAAACAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>370 204 132 121 105 68</canonical_bands>
                <polymorphic_bands>438 204 132 121 105</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTGATAATTGCAAGAAACTCT</pcr_primer_p1>
		<pcr_primer_p2>TAAATTTCTCCTTCTCGAATTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CATTGATAATTGCAAGAAACTCTTCGTCGACGTCGGGAACGTCTTTTTCGTCGGCGAATTCTGAAAAAAAAGGAGCTCAATCTAGGTTTTTAGTTTTCAAGCGAATTTAAAATTAGTTCAAAAATATGTTGAACTCACTGTGAAGTCCGCTTGTTGGTGGCGCACATTTCAATGCGGTTGATCTCCAAGCCGCGATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTA</canonical_amplicon>
		<polymorphic_amplicon>CATTGATAATTGCAAGAAACTCTTCGTCGACGTCGGGAACGTCTTTTTCGTCGGCGAATTCTGRAAAAAAAGGAGCTCAATCTAGGTTTTTAGTTTTCAAGCGAATTTAAAATTAGTTCAAAAATATGTTGAACTCACTGTGAAGTCCGCTTGTTGGTGGCGCACATTTCAATGCGGTTGATCTCCAAGCCGCGATCTTCTTGTTCTTTGTGATGATGGTGTCCTTCAATTCGAGAAGGAGAAATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31579</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>669383</contig_pos>
        <strand>+</strand>
        <context>ATTTACCTAA[A/G]AGTAAATGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCACTCTATTTTCCTTTTGGTAAATCATTTACACGTTCTATTTACCTAA</left_flank>
        <right_flank>AGTAAATGTTCATGAATGCGGCATCAGATTTCAAGCCAACATAACACCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCATTTTTTGGACCATTTCTAGAGGTGACCTATGACTGGCCTTGAGTCAATGTAACTATTTATTATTGCTCCCAAAGAGAACAGATGCTAATAAGCAAAAAAAAGTTAATTGTCAAATGAAGGTCTAGCTTTGCCAAATATTTAGATATCTATTTTTAACATAAAGTTACGTAATAGCTTTTGTCAACTCTGCCATATTTTTATAAATTACTGTGAAAAACAATATTTCAATATAGATTACAAGGGTAAATATTTACTTCGAGTAAATCCTTTTGTGAATACGGTAAATCCATTTTTTGGTAAATCGATTTACAGGTGTAAATATTTACAAAAATGATCACTGAAAAATCAAAAAGAAAAAGAAAATATCAGTGACGTGAAAAATGAAAAATCACTGTAAATCTGAAGGAAAATGCTTTCTTTTACCAATTTTTCATGAATACCAATCACTCTATTTTCCTTTTGGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATGTTCATGAATGCGGCATCAGATTTCAAGCCAACATAACACCACCAACTGTTGATAACCAGCGGAAACCAATCGAAGAAATAAAACAAGAAATCGAAGAAATAGAAGGTCAACCAGAGCAGCCGGATCCTTTTTATATAAAGCCAGAACCAGAGGCACAACGAAAGCGACATCAAAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCCGGAATGTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAAAATGACAAGCATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTTTTTATACATGATACTTTTTTGAATTTTCAAAAAAACAATATTCCAAAACATAAATAAAATAACTAGAAAA</canonical>
            <polymorphic>TTTTTCATTTTTTGGACCATTTCTAGAGGTGACCTATGACTGGCCTTGAGTCAATGTAACTATTTATTATTGCTCCCAAAGAGAACAGATGCTAATAAGCAAAAAAAAGTTAATTGTCAAATGAAGGTCTAGCTTTGCCAAATATTTAGATATCTATTTTTAACATAAAGTTACGTAATAGCTTTTGTCAACTCTGCCATATTTTTATAAATTACTGTGAAAAACAATATTTCAATATAGATTACAAGGGTAAATATTTACTTCGAGTAAATCCTTTTGTGAATACGGTAAATCCATTTTTTGGTAAATCGATTTACAGGTGTAAATATTTACAAAAATGATCACTGAAAAATCAAAAAGAAAAAGAAAATATCAGTGACGTGAAAAATGAAAAATCACTGTAAATCTGAAGGAAAATGCTTTCTTTTACCAATTTTTCATGAATACCAATCACTCTATTTTCCTTTTGGTAAATCATTTACACGTTCTATTTACCTAARAGTAAATGTTCATGAATGCGGCATCAGATTTCAAGCCAACATAACACCACCAACTGTTGATAACCAGCGGAAACCAATCGAAGAAATAAAACAAGAAATCGAAGAAATAGAAGGTCAACCAGAGCAGCCGGATCCTTTTTATATAAAGCCAGAACCAGAGGCACAACGAAAGCGACATCAAAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCCGGAATGTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAAAATGACAAGCATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTTTTTATACATGATACTTTTTTGAATTTTCAAAAAAACAATATTCCAAAACATAAATAAAATAACTAGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATATCAGTGACGTGAAAAATG</pcr_primer_p1>
		<pcr_primer_p2>GACCTTCTATTTCTTCGATTTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATATCAGTGACGTGAAAAATGAAAAATCACTGTAAATCTGAAGGAAAATGCTTTCTTTTACCAATTTTTCATGAATACCAATCACTCTATTTTCCTTTTGGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATGTTCATGAATGCGGCATCAGATTTCAAGCCAACATAACACCACCAACTGTTGATAACCAGCGGAAACCAATCGAAGAAATAAAACAAGAAATCGAAGAAATAGAAGGTC</canonical_amplicon>
		<polymorphic_amplicon>AAATATCAGTGACGTGAAAAATGAAAAATCACTGTAAATCTGAAGGAAAATGCTTTCTTTTACCAATTTTTCATGAATACCAATCACTCTATTTTCCTTTTGGTAAATCATTTACACGTTCTATTTACCTAARAGTAAATGTTCATGAATGCGGCATCAGATTTCAAGCCAACATAACACCACCAACTGTTGATAACCAGCGGAAACCAATCGAAGAAATAAAACAAGAAATCGAAGAAATAGAAGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31580</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>669406</contig_pos>
        <strand>+</strand>
        <context>TGAATGCGGC[A/C]TCAGATTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATCATTTACACGTTCTATTTACCTAAAAGTAAATGTTCATGAATGCGGC</left_flank>
        <right_flank>TCAGATTTCAAGCCAACATAACACCACCAACTGTTGATAACCAGCGGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAGGTGACCTATGACTGGCCTTGAGTCAATGTAACTATTTATTATTGCTCCCAAAGAGAACAGATGCTAATAAGCAAAAAAAAGTTAATTGTCAAATGAAGGTCTAGCTTTGCCAAATATTTAGATATCTATTTTTAACATAAAGTTACGTAATAGCTTTTGTCAACTCTGCCATATTTTTATAAATTACTGTGAAAAACAATATTTCAATATAGATTACAAGGGTAAATATTTACTTCGAGTAAATCCTTTTGTGAATACGGTAAATCCATTTTTTGGTAAATCGATTTACAGGTGTAAATATTTACAAAAATGATCACTGAAAAATCAAAAAGAAAAAGAAAATATCAGTGACGTGAAAAATGAAAAATCACTGTAAATCTGAAGGAAAATGCTTTCTTTTACCAATTTTTCATGAATACCAATCACTCTATTTTCCTTTTGGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATGTTCATGAATGCGGCATCAGATTTCAAGCCAACATAACACCACCAACTGTTGATAACCAGCGGAAACCAATCGAAGAAATAAAACAAGAAATCGAAGAAATAGAAGGTCAACCAGAGCAGCCGGATCCTTTTTATATAAAGCCAGAACCAGAGGCACAACGAAAGCGACATCAAAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCCGGAATGTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAAAATGACAAGCATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTTTTTATACATGATACTTTTTTGAATTTTCAAAAAAACAATATTCCAAAACATAAATAAAATAACTAGAAAATAACTGAATGTCATTTCTGCAAT</canonical>
            <polymorphic>TAGAGGTGACCTATGACTGGCCTTGAGTCAATGTAACTATTTATTATTGCTCCCAAAGAGAACAGATGCTAATAAGCAAAAAAAAGTTAATTGTCAAATGAAGGTCTAGCTTTGCCAAATATTTAGATATCTATTTTTAACATAAAGTTACGTAATAGCTTTTGTCAACTCTGCCATATTTTTATAAATTACTGTGAAAAACAATATTTCAATATAGATTACAAGGGTAAATATTTACTTCGAGTAAATCCTTTTGTGAATACGGTAAATCCATTTTTTGGTAAATCGATTTACAGGTGTAAATATTTACAAAAATGATCACTGAAAAATCAAAAAGAAAAAGAAAATATCAGTGACGTGAAAAATGAAAAATCACTGTAAATCTGAAGGAAAATGCTTTCTTTTACCAATTTTTCATGAATACCAATCACTCTATTTTCCTTTTGGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATGTTCATGAATGCGGCMTCAGATTTCAAGCCAACATAACACCACCAACTGTTGATAACCAGCGGAAACCAATCGAAGAAATAAAACAAGAAATCGAAGAAATAGAAGGTCAACCAGAGCAGCCGGATCCTTTTTATATAAAGCCAGAACCAGAGGCACAACGAAAGCGACATCAAAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCCGGAATGTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAAAATGACAAGCATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTTTTTATACATGATACTTTTTTGAATTTTCAAAAAAACAATATTCCAAAACATAAATAAAATAACTAGAAAATAACTGAATGTCATTTCTGCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATATCAGTGACGTGAAAAATG</pcr_primer_p1>
		<pcr_primer_p2>GACCTTCTATTTCTTCGATTTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATATCAGTGACGTGAAAAATGAAAAATCACTGTAAATCTGAAGGAAAATGCTTTCTTTTACCAATTTTTCATGAATACCAATCACTCTATTTTCCTTTTGGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATGTTCATGAATGCGGCATCAGATTTCAAGCCAACATAACACCACCAACTGTTGATAACCAGCGGAAACCAATCGAAGAAATAAAACAAGAAATCGAAGAAATAGAAGGTC</canonical_amplicon>
		<polymorphic_amplicon>AAATATCAGTGACGTGAAAAATGAAAAATCACTGTAAATCTGAAGGAAAATGCTTTCTTTTACCAATTTTTCATGAATACCAATCACTCTATTTTCCTTTTGGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATGTTCATGAATGCGGCMTCAGATTTCAAGCCAACATAACACCACCAACTGTTGATAACCAGCGGAAACCAATCGAAGAAATAAAACAAGAAATCGAAGAAATAGAAGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31581</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>670048</contig_pos>
        <strand>+</strand>
        <context>CAAAGGTTTG[G/T]TGGAGGTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTTTTTATTCCTTTCAAAACTGCTGCTTTCTCACTCATCCAAAGGTTTG</left_flank>
        <right_flank>TGGAGGTTGTATATTCAACCACACATGTTCTCATCTTTTTTCTGGTCCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGAAAGCGACATCAAAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCCGGAATGTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAAAATGACAAGCATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTTTTTATACATGATACTTTTTTGAATTTTCAAAAAAACAATATTCCAAAACATAAATAAAATAACTAGAAAATAACTGAATGTCATTTCTGCAATTTTTGAGAATATTTCGCAGTATAACTTCCTGAAAAATTATTAATTAATCCGCTGGGGAGCTAACCATTCTGACAATCTAATTGAACTTCAACTTTTTTATTCCTTTCAAAACTGCTGCTTTCTCACTCATCCAAAGGTTTGTTGGAGGTTGTATATTCAACCACACATGTTCTCATCTTTTTTCTGGTCCAAGTCTTTTGTGCGTGTCTGTTTCTCTTCCTTCACCAGGAGATAAAACCGAGCATTTTTGATCTCTAATTTGCTTTAGCTTTTCCAGTGGAAAAAAAGAGTAAAAAAAACTAAAAACAGGAAAATTTTCATATACAAATCAGCTCAATAAAATGGTATTGTATTGAAAAAATATACTGAAAATCAGTCAAAGTGGGAGAAAAACATAAAAGAAAGACTGAAAATTGATTTGAGATTGTTAATAATATGTTAAAGGAAAGTTGAAGGAAAAGTAGGTCAAACGAGAAATCGAAAATTTTGAAGATTGTCATCAAATCAACCATTGTTTCTTAGTTCTGCAAATCAATATCTTGAAATTTAATCCCATTTTTCGACTAAATTATGTTGAAAAAAGTCACAATTTGACTGAATTCATTTCACTTTTGTTTTCCAAATCTAATTTTTGAATCTAAG</canonical>
            <polymorphic>ACGAAAGCGACATCAAAAGACTGGCATTTGAGTAATAATTTTGTTGTGGATTGATTTTAATTTTTGTGAATTTATAATAAATTTGTTGAAACACTATTCCAGTTAATAATACGCCTACTCAAAATTTTTCAAAAAAACATTTTTATCCGGAATGTTCAAAATCTCTGGTTTTCTAATGCGGAAGCAATGTTAAAAATGACAAGCATAGGTTCTACGAAGAAATTGGAAAAATTGGTGCTTCATTGACACAAGTTAACTCAGGTTTTTTATACATGATACTTTTTTGAATTTTCAAAAAAACAATATTCCAAAACATAAATAAAATAACTAGAAAATAACTGAATGTCATTTCTGCAATTTTTGAGAATATTTCGCAGTATAACTTCCTGAAAAATTATTAATTAATCCGCTGGGGAGCTAACCATTCTGACAATCTAATTGAACTTCAACTTTTTTATTCCTTTCAAAACTGCTGCTTTCTCACTCATCCAAAGGTTTGKTGGAGGTTGTATATTCAACCACACATGTTCTCATCTTTTTTCTGGTCCAAGTCTTTTGTGCGTGTCTGTTTCTCTTCCTTCACCAGGAGATAAAACCGAGCATTTTTGATCTCTAATTTGCTTTAGCTTTTCCAGTGGAAAAAAAGAGTAAAAAAAACTAAAAACAGGAAAATTTTCATATACAAATCAGCTCAATAAAATGGTATTGTATTGAAAAAATATACTGAAAATCAGTCAAAGTGGGAGAAAAACATAAAAGAAAGACTGAAAATTGATTTGAGATTGTTAATAATATGTTAAAGGAAAGTTGAAGGAAAAGTAGGTCAAACGAGAAATCGAAAATTTTGAAGATTGTCATCAAATCAACCATTGTTTCTTAGTTCTGCAAATCAATATCTTGAAATTTAATCCCATTTTTCGACTAAATTATGTTGAAAAAAGTCACAATTTGACTGAATTCATTTCACTTTTGTTTTCCAAATCTAATTTTTGAATCTAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCATTTCTGCAATTTTTGAG</pcr_primer_p1>
		<pcr_primer_p2>TATCTCCTGGTGAAGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTCATTTCTGCAATTTTTGAGAATATTTCGCAGTATAACTTCCTGAAAAATTATTAATTAATCCGCTGGGGAGCTAACCATTCTGACAATCTAATTGAACTTCAACTTTTTTATTCCTTTCAAAACTGCTGCTTTCTCACTCATCCAAAGGTTTGTTGGAGGTTGTATATTCAACCACACATGTTCTCATCTTTTTTCTGGTCCAAGTCTTTTGTGCGTGTCTGTTTCTCTTCCTTCACCAGGAGATA</canonical_amplicon>
		<polymorphic_amplicon>GTCATTTCTGCAATTTTTGAGAATATTTCGCAGTATAACTTCCTGAAAAATTATTAATTAATCCGCTGGGGAGCTAACCATTCTGACAATCTAATTGAACTTCAACTTTTTTATTCCTTTCAAAACTGCTGCTTTCTCACTCATCCAAAGGTTTGKTGGAGGTTGTATATTCAACCACACATGTTCTCATCTTTTTTCTGGTCCAAGTCTTTTGTGCGTGTCTGTTTCTCTTCCTTCACCAGGAGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31582</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>671426</contig_pos>
        <strand>+</strand>
        <context>CTTGTTCCTC[C/T]TTCGTTTGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACAGTTTTAAAAATTTACTTACGAATTCCGGTATTTTTTCTTGTTCCTC</left_flank>
        <right_flank>TTCGTTTGAGCCAACAACCATATTTACCATTTCTTGTCCTTCCTCTTCGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTTATACCACCAAACTTCAGATCCTTGAATGCAATTGACCAAAGAGAAACCTCGATTTCACCATCTTTGCTTGATCTGATTGAAATCGGAGACGCGGTAGGTTGAAGGAAACATGAGCCTGGAGTGAGGAGGCTATGACTGCATCCCTGATATCAAAATGAAATTTACCGATTTTCTCATTCATCGTTTGATTTGTCTTCTGATCTACTGGTCCACTAATATCGGTTTGACATGAAGTTGTAGTCTGATTTGGATGCTTGAATAGTTCCACAAGTTTGACGACTTTTTTGTTCTCCAAAAATTGGATAAACATTATTGAGTCCATGTCATTTTTCCTTGGCTTGGCTTGCTCCAGCGCCTTGATGCGATCAATGAGTGTGTGATATGTTTGGCGAATCATACGTTTTGAGGTGCAAGAATAAGAAGACACTGTAAAAAAGAATACCTTACAGTTTTAAAAATTTACTTACGAATTCCGGTATTTTTTCTTGTTCCTCTTTCGTTTGAGCCAACAACCATATTTACCATTTCTTGTCCTTCCTCTTCGTCTAACTCTTCATCAGCATAGTTTGGATTCGTTTCCAATTTGGACTGGATCACATGATCTACTAAAATACCATAAGCCCATTCTTTCATTTCTCCAAAGAAACCAATTGTCTCTTCGCCTGTATGAGTTGCAGCGTATTCCATTAGGTTAGCTGGAGAAGTGATTTTAAAATAATTTCGATAGATTTAGACTCACGATTTATGCAAATATCAAGATGTGAGGCGTCCTCAACTAATAGATCCTTCTCGTACACCAGTAATGCCATTTTTTGAATCTTTTTCATATGTTTTTCGAACTGATTTTGTTTCCATTTGGCGATCCTTTTAATAGTCAATTCGAAGCACATGGAAATAAGGCACATTCCATTCAGAATAAGCGACAAATTGAATGGAATCATGTTTTGGTTTTGGAAAATCAAATCACCATATCCTATTGTTCTGAAAAAGGCAAT</canonical>
            <polymorphic>CAGTTATACCACCAAACTTCAGATCCTTGAATGCAATTGACCAAAGAGAAACCTCGATTTCACCATCTTTGCTTGATCTGATTGAAATCGGAGACGCGGTAGGTTGAAGGAAACATGAGCCTGGAGTGAGGAGGCTATGACTGCATCCCTGATATCAAAATGAAATTTACCGATTTTCTCATTCATCGTTTGATTTGTCTTCTGATCTACTGGTCCACTAATATCGGTTTGACATGAAGTTGTAGTCTGATTTGGATGCTTGAATAGTTCCACAAGTTTGACGACTTTTTTGTTCTCCAAAAATTGGATAAACATTATTGAGTCCATGTCATTTTTCCTTGGCTTGGCTTGCTCCAGCGCCTTGATGCGATCAATGAGTGTGTGATATGTTTGGCGAATCATACGTTTTGAGGTGCAAGAATAAGAAGACACTGTAAAAAAGAATACCTTACAGTTTTAAAAATTTACTTACGAATTCCGGTATTTTTTCTTGTTCCTCYTTCGTTTGAGCCAACAACCATATTTACCATTTCTTGTCCTTCCTCTTCGTCTAACTCTTCATCAGCATAGTTTGGATTCGTTTCCAATTTGGACTGGATCACATGATCTACTAAAATACCATAAGCCCATTCTTTCATTTCTCCAAAGAAACCAATTGTCTCTTCGCCTGTATGAGTTGCAGCGTATTCCATTAGGTTAGCTGGAGAAGTGATTTTAAAATAATTTCGATAGATTTAGACTCACGATTTATGCAAATATCAAGATGTGAGGCGTCCTCAACTAATAGATCCTTCTCGTACACCAGTAATGCCATTTTTTGAATCTTTTTCATATGTTTTTCGAACTGATTTTGTTTCCATTTGGCGATCCTTTTAATAGTCAATTCGAAGCACATGGAAATAAGGCACATTCCATTCAGAATAAGCGACAAATTGAATGGAATCATGTTTTGGTTTTGGAAAATCAAATCACCATATCCTATTGTTCTGAAAAAGGCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTGAGTCCATGTCATTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CTGATGAAGAGTTAGACGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTATTGAGTCCATGTCATTTTTCCTTGGCTTGGCTTGCTCCAGCGCCTTGATGCGATCAATGAGTGTGTGATATGTTTGGCGAATCATACGTTTTGAGGTGCAAGAATAAGAAGACACTGTAAAAAAGAATACCTTACAGTTTTAAAAATTTACTTACGAATTCCGGTATTTTTTCTTGTTCCTCTTTCGTTTGAGCCAACAACCATATTTACCATTTCTTGTCCTTCCTCTTCGTCTAACTCTTCATCAG</canonical_amplicon>
		<polymorphic_amplicon>TTATTGAGTCCATGTCATTTTTCCTTGGCTTGGCTTGCTCCAGCGCCTTGATGCGATCAATGAGTGTGTGATATGTTTGGCGAATCATACGTTTTGAGGTGCAAGAATAAGAAGACACTGTAAAAAAGAATACCTTACAGTTTTAAAAATTTACTTACGAATTCCGGTATTTTTTCTTGTTCCTCYTTCGTTTGAGCCAACAACCATATTTACCATTTCTTGTCCTTCCTCTTCGTCTAACTCTTCATCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31587</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>682642</contig_pos>
        <strand>+</strand>
        <context>ATTCTTCTTC[A/G]TTTTTTCCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTC</left_flank>
        <right_flank>TTTTTTCCTGGCGCCTCCATTTTTGGCCGCAAACTGTCTAGTGAGTCATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTTCCTCAATATCACACTTACTTCTTTTTTCCCTCGAGATTCTGAAAATCTCTCCTTATCAACAACTTGTTATTATCACTTACTACTTTTTTACATGTTTCTATCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCTACATGCATATATAAAAAGAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGTTTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTCGGTTTACTTCGAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCTTTTTTTCCTGGCGCCTCCATTTTTGGCCGCAAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCCCCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAGTTTTCGTGTTCTCCCCAACAACTGAATGGTGCGCATTTGGCGTGAATTAATCTAGTTTTTACTTGTTCGTTAGCTTGGCTCCTCTGTATTTCTTGAAAAGTCACGTCTATTTATTTTTAATTTCCAAGCTATTCAAAAATGTGAGGAAAGAGTAATTGAGAAATGAAAAATTGCAACTTCATTTTTTTTATTATAAGGAAAATATTTTCCATAAGTGCAAAATCACGGACTGGCTTGCCATTTGTGCAGATGCTGATTTTTTTGAACTTTTTTTTAAATTTTTGAAAAATTTTTGAAAAATTTTTTGAAACACTGTCCTCAAAACCTAAATTCGTGATATTATTTCAAAATTGATATTTTCTTGAAGAGCTAAAAAAAACCTAT</canonical>
            <polymorphic>TATTTTCCTCAATATCACACTTACTTCTTTTTTCCCTCGAGATTCTGAAAATCTCTCCTTATCAACAACTTGTTATTATCACTTACTACTTTTTTACATGTTTCTATCCGGTAATCCTACCTCATTTTTCTCAAGATCTCTTTTTCGTACATATCTACATGCATATATAAAAAGAAATGAGCTGCTGTATGAGCTCTTACCCTCTCCTTTCTTCGTTTTCTACATTTTCTTCTTCTTCTACTTATTCACCCCTAGCATCATATGCACGGGCTAATGAATTTTTGGCACTAAACATGTGCTCTCTGTCATCTTACACACCCCTTCATGTTTCTAATTAGTCTTGAGAAATATTATTTCCTCGGTTTACTTCGAAAAGTGCACATGGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCRTTTTTTCCTGGCGCCTCCATTTTTGGCCGCAAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCCCCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAGTTTTCGTGTTCTCCCCAACAACTGAATGGTGCGCATTTGGCGTGAATTAATCTAGTTTTTACTTGTTCGTTAGCTTGGCTCCTCTGTATTTCTTGAAAAGTCACGTCTATTTATTTTTAATTTCCAAGCTATTCAAAAATGTGAGGAAAGAGTAATTGAGAAATGAAAAATTGCAACTTCATTTTTTTTATTATAAGGAAAATATTTTCCATAAGTGCAAAATCACGGACTGGCTTGCCATTTGTGCAGATGCTGATTTTTTTGAACTTTTTTTTAAATTTTTGAAAAATTTTTGAAAAATTTTTTGAAACACTGTCCTCAAAACCTAAATTCGTGATATTATTTCAAAATTGATATTTTCTTGAAGAGCTAAAAAAAACCTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGGTCTGAATGTTAGTCATC</pcr_primer_p1>
		<pcr_primer_p2>GAACACGAAAACTTTTAAACTGA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCTTTTTTTCCTGGCGCCTCCATTTTTGGCCGCAAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCCCCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAGTTTTCGTGTTC</canonical_amplicon>
		<polymorphic_amplicon>GGTGGTCTGAATGTTAGTCATCCGGTGTATAGAAATATACTTATGATATGTGTTTTTTTCTGTGGAGAGAGGTCTTCCTTTAGTGTCCTGAAAAGCAAACAGAGTGATTCTTCTTCRTTTTTTCCTGGCGCCTCCATTTTTGGCCGCAAACTGTCTAGTGAGTCATCACAGAAGTAGCCTCCCCCACTCATACTGCTTTTTTTTCAGAAAAATTTTCAATTTCAGTTTAAAAGTTTTCGTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31588</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>710478</contig_pos>
        <strand></strand>
        <context>tctattaTGT[G/A]taccaaaacg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CATTCACCTCATTTGGGTGACCTTGTATTAGAGCTGGTGTTCTATTATGT</left_flank>
        <right_flank>TACCAAAACGTATTTGACAGTCGATTTTTGGTAATTTTGACCATTTCCAG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAAGAGAAAAAAGGGTAAACTAGAAAACAACAATGGGTTGGAAAGATGAAGGTTAATTATTCAGAATTTATGTAGTATTTTAGAATTTTTGGTGGTTAGTGGGACGTTTATATTCAAAAAAAAGGACGACGAATATGAAAATGAAGAGCACATTTTATTGTTGTGGTATGCATAGCCCCCAATTGACAAATTTTGGCTCTTAACTCCCTGTACCTCGAATGTGTAAGGATCAAGGCGAATGGAATTCACAATAAAAAGATACGGTAAAAACTGTAATATATCGCCATTTCGTTCTGTTTTTTGGAGTGGTGTTTTGTGATGTTGCGAGATAACAAAAATTGGTTTTTTACTTGGTTAACAGAAAACGTAAACGATAAATTTGATGCGAAATTTCTAGTTTCTACTGCTACTCTGTTAATCAAGCATGACAACTTTGTTTTGCTACCTCATTCACCTCATTTGGGTGACCTTGTATTAGAGCTGGTGTTCTATTATGTGTACCAAAACGTATTTGACAGTCGATTTTTGGTAATTTTGACCATTTCCAGGAGTCTGGAGCTCGGATGTCAAGTTTCCAATCACGTTAAAATTTTTGAGGATGTAAAACAGGCCTAGATGGAAAAATTCGCATTCACATAAATTTTGAATGTTTCTAGTTGTTCATCTTTTCATCAACTTTTTTATGTTTTCAGTGCTAAAACAGGCGAAGGTGTTTTTCAAAAATCGGCGAATAGATGAAAAACTAGAAATTTTCAAAATATGCAAAGTTTGTGATCTAGGTATGCTTTAAGCATGAAAAAATGTTTAAAAAATCTTCAAAGTAATTGCAAACTTGACAGCCGAGCTCCCAGACTCCCGAAAATAACCAAAAAGGCCAAAAATCAACTGAAAAATCAATTTCTGTATGTTTAATCGACCGTCACTGTATATGAGTGATCAAAAGTCATAAGAAACACAATACCTGAAAATGAAACTATGAATGAGTTAACCAAATATTT</canonical>
            <polymorphic>TCGAAGAGAAAAAAGGGTAAACTAGAAAACAACAATGGGTTGGAAAGATGAAGGTTAATTATTCAGAATTTATGTAGTATTTTAGAATTTTTGGTGGTTAGTGGGACGTTTATATTCAAAAAAAAGGACGACGAATATGAAAATGAAGAGCACATTTTATTGTTGTGGTATGCATAGCCCCCAATTGACAAATTTTGGCTCTTAACTCCCTGTACCTCGAATGTGTAAGGATCAAGGCGAATGGAATTCACAATAAAAAGATACGGTAAAAACTGTAATATATCGCCATTTCGTTCTGTTTTTTGGAGTGGTGTTTTGTGATGTTGCGAGATAACAAAAATTGGTTTTTTACTTGGTTAACAGAAAACGTAAACGATAAATTTGATGCGAAATTTCTAGTTTCTACTGCTACTCTGTTAATCAAGCATGACAACTTTGTTTTGCTACCTCATTCACCTCATTTGGGTGACCTTGTATTAGAGCTGGTGTTCTATTATGTRTACCAAAACGTATTTGACAGTCGATTTTTGGTAATTTTGACCATTTCCAGGAGTCTGGAGCTCGGATGTCAAGTTTCCAATCACGTTAAAATTTTTGAGGATGTAAAACAGGCCTAGATGGAAAAATTCGCATTCACATAAATTTTGAATGTTTCTAGTTGTTCATCTTTTCATCAACTTTTTTATGTTTTCAGTGCTAAAACAGGCGAAGGTGTTTTTCAAAAATCGGCGAATAGATGAAAAACTAGAAATTTTCAAAATATGCAAAGTTTGTGATCTAGGTATGCTTTAAGCATGAAAAAATGTTTAAAAAATCTTCAAAGTAATTGCAAACTTGACAGCCGAGCTCCCAGACTCCCGAAAATAACCAAAAAGGCCAAAAATCAACTGAAAAATCAATTTCTGTATGTTTAATCGACCGTCACTGTATATGAGTGATCAAAAGTCATAAGAAACACAATACCTGAAAATGAAACTATGAATGAGTTAACCAAATATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 288 213</canonical_bands>
                <polymorphic_bands>787 213</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>149 135 96 83 61 60 60 58 53 49 43 25 20 20 18 15 13 13 12 7 7 3</canonical_bands>
                <polymorphic_bands>149 135 96 95 61 60 60 58 53 49 43 25 20 20 18 15 13 13 7 7 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAATGGAATTCACAATAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTATGACTTTTGATCACTCA</pcr_primer_p2>
		<pcr_amplicon_size>718</pcr_amplicon_size>
		<canonical_amplicon>CGAATGGAATTCACAATAAAAAGATACGGTAAAAACTGTAATATATCGCCATTTCGTTCTGTTTTTTGGAGTGGTGTTTTGTGATGTTGCGAGATAACAAAAATTGGTTTTTTACTTGGTTAACAGAAAACGTAAACGATAAATTTGATGCGAAATTTCTAGTTTCTACTGCTACTCTGTTAATCAAGCATGACAACTTTGTTTTGCTACCTCATTCACCTCATTTGGGTGACCTTGTATTAGAGCTGGTGTTCTATTATGTGTACCAAAACGTATTTGACAGTCGATTTTTGGTAATTTTGACCATTTCCAGGAGTCTGGAGCTCGGATGTCAAGTTTCCAATCACGTTAAAATTTTTGAGGATGTAAAACAGGCCTAGATGGAAAAATTCGCATTCACATAAATTTTGAATGTTTCTAGTTGTTCATCTTTTCATCAACTTTTTTATGTTTTCAGTGCTAAAACAGGCGAAGGTGTTTTTCAAAAATCGGCGAATAGATGAAAAACTAGAAATTTTCAAAATATGCAAAGTTTGTGATCTAGGTATGCTTTAAGCATGAAAAAATGTTTAAAAAATCTTCAAAGTAATTGCAAACTTGACAGCCGAGCTCCCAGACTCCCGAAAATAACCAAAAAGGCCAAAAATCAACTGAAAAATCAATTTCTGTATGTTTAATCGACCGTCACTGTATATGAGTGATCAAAAGTCATAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>CGAATGGAATTCACAATAAAAAGATACGGTAAAAACTGTAATATATCGCCATTTCGTTCTGTTTTTTGGAGTGGTGTTTTGTGATGTTGCGAGATAACAAAAATTGGTTTTTTACTTGGTTAACAGAAAACGTAAACGATAAATTTGATGCGAAATTTCTAGTTTCTACTGCTACTCTGTTAATCAAGCATGACAACTTTGTTTTGCTACCTCATTCACCTCATTTGGGTGACCTTGTATTAGAGCTGGTGTTCTATTATGTRTACCAAAACGTATTTGACAGTCGATTTTTGGTAATTTTGACCATTTCCAGGAGTCTGGAGCTCGGATGTCAAGTTTCCAATCACGTTAAAATTTTTGAGGATGTAAAACAGGCCTAGATGGAAAAATTCGCATTCACATAAATTTTGAATGTTTCTAGTTGTTCATCTTTTCATCAACTTTTTTATGTTTTCAGTGCTAAAACAGGCGAAGGTGTTTTTCAAAAATCGGCGAATAGATGAAAAACTAGAAATTTTCAAAATATGCAAAGTTTGTGATCTAGGTATGCTTTAAGCATGAAAAAATGTTTAAAAAATCTTCAAAGTAATTGCAAACTTGACAGCCGAGCTCCCAGACTCCCGAAAATAACCAAAAAGGCCAAAAATCAACTGAAAAATCAATTTCTGTATGTTTAATCGACCGTCACTGTATATGAGTGATCAAAAGTCATAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31589</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>713969</contig_pos>
        <strand></strand>
        <context>AGAGAAAAAG[A/G]GATTGTGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACACCACCATTTGCATACAAAGTACGAAGACTCACGGAGCAGAGAAAAAG</left_flank>
        <right_flank>GATTGTGTTTTTTGAATTTGCGCTTTTTATTTTTAGTTCTCGGATTATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTGTTTGCTTATTGCCAAATGACGTATCAAAAAGCTGCTCCAACTCGTTTCTTGGAACTTTTGTCAATTTTCAATGTCATGAACAAAACGAACAGCGACCTACAGTACGTCAGTATGATGTTTCAACTGGGATCTCCTGGATTTGGATTCAAGAAGCTGGTGTACGACGTTTTTGTGCAACCTGGAATCTCAAGTTGAAAGCTGAAATTGATTTTTATTGATGAATAAAATTATTTATATTCACATCAGTTCCAATAACATATAAATCTCCACTCAACCTATCATAATTTTCTGATCTCTGTCTCTAGATTATGCTAAAACGTGCATTTTCGAAATATCCAAAAGCGCGATTGTTTTTTCTGGTTTCTGTCATATAATTTCTGATTTCTTGAAATTTTCTGGTTTGTGATAAGCCGACCAACGACTGAATTTAGTTTTGTTCCTGATACACCACCATTTGCATACAAAGTACGAAGACTCACGGAGCAGAGAAAAAGAGATTGTGTTTTTTGAATTTGCGCTTTTTATTTTTAGTTCTCGGATTATTTGACCAATTTTGAGGGATATTAGGAATTTCAATTAAATAAGATGACTAATTTTTAGAAGATAAGTATCAAGATTTTCAGATTTTTGTTTCTTTATTGGAAATCTGATTACCAAATTGGGATTGAAAAATCAAAGAGATCAACTAGGACTGGCGAAACGAATTGAAATTACGGTTAACAAGAAAAATAAGATTTCAGTGAAAATTAAAAATAGGGAAATTTGTTACTTATGTCAAAATGTCAAAATCAGTCAACGTCTCTTCAAGAGGTTATTCATTTAGACGTGTTGGCACATTTGCGGGAAGTTTGTATGTAATTTCGAAAAGATACTTTGGCGTCGTCGGCAAGTCTTGATCGGAGGTTGGTAGAATTCAGATGAGACCGCTCGATTTTTGATTGAGCTAATTTACTATTTGAGCTCATTTACTTCAATTCCTATGCGAGGTGTTAAAC</canonical>
            <polymorphic>GACTGTTTGCTTATTGCCAAATGACGTATCAAAAAGCTGCTCCAACTCGTTTCTTGGAACTTTTGTCAATTTTCAATGTCATGAACAAAACGAACAGCGACCTACAGTACGTCAGTATGATGTTTCAACTGGGATCTCCTGGATTTGGATTCAAGAAGCTGGTGTACGACGTTTTTGTGCAACCTGGAATCTCAAGTTGAAAGCTGAAATTGATTTTTATTGATGAATAAAATTATTTATATTCACATCAGTTCCAATAACATATAAATCTCCACTCAACCTATCATAATTTTCTGATCTCTGTCTCTAGATTATGCTAAAACGTGCATTTTCGAAATATCCAAAAGCGCGATTGTTTTTTCTGGTTTCTGTCATATAATTTCTGATTTCTTGAAATTTTCTGGTTTGTGATAAGCCGACCAACGACTGAATTTAGTTTTGTTCCTGATACACCACCATTTGCATACAAAGTACGAAGACTCACGGAGCAGAGAAAAAGRGATTGTGTTTTTTGAATTTGCGCTTTTTATTTTTAGTTCTCGGATTATTTGACCAATTTTGAGGGATATTAGGAATTTCAATTAAATAAGATGACTAATTTTTAGAAGATAAGTATCAAGATTTTCAGATTTTTGTTTCTTTATTGGAAATCTGATTACCAAATTGGGATTGAAAAATCAAAGAGATCAACTAGGACTGGCGAAACGAATTGAAATTACGGTTAACAAGAAAAATAAGATTTCAGTGAAAATTAAAAATAGGGAAATTTGTTACTTATGTCAAAATGTCAAAATCAGTCAACGTCTCTTCAAGAGGTTATTCATTTAGACGTGTTGGCACATTTGCGGGAAGTTTGTATGTAATTTCGAAAAGATACTTTGGCGTCGTCGGCAAGTCTTGATCGGAGGTTGGTAGAATTCAGATGAGACCGCTCGATTTTTGATTGAGCTAATTTACTATTTGAGCTCATTTACTTCAATTCCTATGCGAGGTGTTAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTCTGGTTTGTGATAAGC</pcr_primer_p1>
		<pcr_primer_p2>CCAATAAAGAAACAAAAATCTGA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AATTTTCTGGTTTGTGATAAGCCGACCAACGACTGAATTTAGTTTTGTTCCTGATACACCACCATTTGCATACAAAGTACGAAGACTCACGGAGCAGAGAAAAAGAGATTGTGTTTTTTGAATTTGCGCTTTTTATTTTTAGTTCTCGGATTATTTGACCAATTTTGAGGGATATTAGGAATTTCAATTAAATAAGATGACTAATTTTTAGAAGATAAGTATCAAGATTTTCAGATTTTTGTTTCTTTATTGG</canonical_amplicon>
		<polymorphic_amplicon>AATTTTCTGGTTTGTGATAAGCCGACCAACGACTGAATTTAGTTTTGTTCCTGATACACCACCATTTGCATACAAAGTACGAAGACTCACGGAGCAGAGAAAAAGRGATTGTGTTTTTTGAATTTGCGCTTTTTATTTTTAGTTCTCGGATTATTTGACCAATTTTGAGGGATATTAGGAATTTCAATTAAATAAGATGACTAATTTTTAGAAGATAAGTATCAAGATTTTCAGATTTTTGTTTCTTTATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31590</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>714032</contig_pos>
        <strand></strand>
        <context>CCAATTTTGA[G/A]GGATATTAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGAATTTGCGCTTTTTATTTTTAGTTCTCGGATTATTTGACCAATTTTGA</left_flank>
        <right_flank>GGATATTAGGAATTTCAATTAAATAAGATGACTAATTTTTAGAAGATAAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCAATTTTCAATGTCATGAACAAAACGAACAGCGACCTACAGTACGTCAGTATGATGTTTCAACTGGGATCTCCTGGATTTGGATTCAAGAAGCTGGTGTACGACGTTTTTGTGCAACCTGGAATCTCAAGTTGAAAGCTGAAATTGATTTTTATTGATGAATAAAATTATTTATATTCACATCAGTTCCAATAACATATAAATCTCCACTCAACCTATCATAATTTTCTGATCTCTGTCTCTAGATTATGCTAAAACGTGCATTTTCGAAATATCCAAAAGCGCGATTGTTTTTTCTGGTTTCTGTCATATAATTTCTGATTTCTTGAAATTTTCTGGTTTGTGATAAGCCGACCAACGACTGAATTTAGTTTTGTTCCTGATACACCACCATTTGCATACAAAGTACGAAGACTCACGGAGCAGAGAAAAAGAGATTGTGTTTTTTGAATTTGCGCTTTTTATTTTTAGTTCTCGGATTATTTGACCAATTTTGAGGGATATTAGGAATTTCAATTAAATAAGATGACTAATTTTTAGAAGATAAGTATCAAGATTTTCAGATTTTTGTTTCTTTATTGGAAATCTGATTACCAAATTGGGATTGAAAAATCAAAGAGATCAACTAGGACTGGCGAAACGAATTGAAATTACGGTTAACAAGAAAAATAAGATTTCAGTGAAAATTAAAAATAGGGAAATTTGTTACTTATGTCAAAATGTCAAAATCAGTCAACGTCTCTTCAAGAGGTTATTCATTTAGACGTGTTGGCACATTTGCGGGAAGTTTGTATGTAATTTCGAAAAGATACTTTGGCGTCGTCGGCAAGTCTTGATCGGAGGTTGGTAGAATTCAGATGAGACCGCTCGATTTTTGATTGAGCTAATTTACTATTTGAGCTCATTTACTTCAATTCCTATGCGAGGTGTTAAACATATGTCAACTGACAAAACACGTCAGATATTTTGATGAAAAATTTATCAGTGGACAGCTTGTT</canonical>
            <polymorphic>TGTCAATTTTCAATGTCATGAACAAAACGAACAGCGACCTACAGTACGTCAGTATGATGTTTCAACTGGGATCTCCTGGATTTGGATTCAAGAAGCTGGTGTACGACGTTTTTGTGCAACCTGGAATCTCAAGTTGAAAGCTGAAATTGATTTTTATTGATGAATAAAATTATTTATATTCACATCAGTTCCAATAACATATAAATCTCCACTCAACCTATCATAATTTTCTGATCTCTGTCTCTAGATTATGCTAAAACGTGCATTTTCGAAATATCCAAAAGCGCGATTGTTTTTTCTGGTTTCTGTCATATAATTTCTGATTTCTTGAAATTTTCTGGTTTGTGATAAGCCGACCAACGACTGAATTTAGTTTTGTTCCTGATACACCACCATTTGCATACAAAGTACGAAGACTCACGGAGCAGAGAAAAAGAGATTGTGTTTTTTGAATTTGCGCTTTTTATTTTTAGTTCTCGGATTATTTGACCAATTTTGARGGATATTAGGAATTTCAATTAAATAAGATGACTAATTTTTAGAAGATAAGTATCAAGATTTTCAGATTTTTGTTTCTTTATTGGAAATCTGATTACCAAATTGGGATTGAAAAATCAAAGAGATCAACTAGGACTGGCGAAACGAATTGAAATTACGGTTAACAAGAAAAATAAGATTTCAGTGAAAATTAAAAATAGGGAAATTTGTTACTTATGTCAAAATGTCAAAATCAGTCAACGTCTCTTCAAGAGGTTATTCATTTAGACGTGTTGGCACATTTGCGGGAAGTTTGTATGTAATTTCGAAAAGATACTTTGGCGTCGTCGGCAAGTCTTGATCGGAGGTTGGTAGAATTCAGATGAGACCGCTCGATTTTTGATTGAGCTAATTTACTATTTGAGCTCATTTACTTCAATTCCTATGCGAGGTGTTAAACATATGTCAACTGACAAAACACGTCAGATATTTTGATGAAAAATTTATCAGTGGACAGCTTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGCATACAAAGTACGAAGAC</pcr_primer_p1>
		<pcr_primer_p2>CAGTCCTAGTTGATCTCTTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ATTTGCATACAAAGTACGAAGACTCACGGAGCAGAGAAAAAGAGATTGTGTTTTTTGAATTTGCGCTTTTTATTTTTAGTTCTCGGATTATTTGACCAATTTTGAGGGATATTAGGAATTTCAATTAAATAAGATGACTAATTTTTAGAAGATAAGTATCAAGATTTTCAGATTTTTGTTTCTTTATTGGAAATCTGATTACCAAATTGGGATTGAAAAATCAAAGAGATCAACTAGGACTG</canonical_amplicon>
		<polymorphic_amplicon>ATTTGCATACAAAGTACGAAGACTCACGGAGCAGAGAAAAAGAGATTGTGTTTTTTGAATTTGCGCTTTTTATTTTTAGTTCTCGGATTATTTGACCAATTTTGARGGATATTAGGAATTTCAATTAAATAAGATGACTAATTTTTAGAAGATAAGTATCAAGATTTTCAGATTTTTGTTTCTTTATTGGAAATCTGATTACCAAATTGGGATTGAAAAATCAAAGAGATCAACTAGGACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31591</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>714077</contig_pos>
        <strand></strand>
        <context>ATTTTTAGAA[G/A]ATAAGTATCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTGAGGGATATTAGGAATTTCAATTAAATAAGATGACTAATTTTTAGAA</left_flank>
        <right_flank>ATAAGTATCAAGATTTTCAGATTTTTGTTTCTTTATTGGAAATCTGATTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGTCAGTATGATGTTTCAACTGGGATCTCCTGGATTTGGATTCAAGAAGCTGGTGTACGACGTTTTTGTGCAACCTGGAATCTCAAGTTGAAAGCTGAAATTGATTTTTATTGATGAATAAAATTATTTATATTCACATCAGTTCCAATAACATATAAATCTCCACTCAACCTATCATAATTTTCTGATCTCTGTCTCTAGATTATGCTAAAACGTGCATTTTCGAAATATCCAAAAGCGCGATTGTTTTTTCTGGTTTCTGTCATATAATTTCTGATTTCTTGAAATTTTCTGGTTTGTGATAAGCCGACCAACGACTGAATTTAGTTTTGTTCCTGATACACCACCATTTGCATACAAAGTACGAAGACTCACGGAGCAGAGAAAAAGAGATTGTGTTTTTTGAATTTGCGCTTTTTATTTTTAGTTCTCGGATTATTTGACCAATTTTGAGGGATATTAGGAATTTCAATTAAATAAGATGACTAATTTTTAGAAGATAAGTATCAAGATTTTCAGATTTTTGTTTCTTTATTGGAAATCTGATTACCAAATTGGGATTGAAAAATCAAAGAGATCAACTAGGACTGGCGAAACGAATTGAAATTACGGTTAACAAGAAAAATAAGATTTCAGTGAAAATTAAAAATAGGGAAATTTGTTACTTATGTCAAAATGTCAAAATCAGTCAACGTCTCTTCAAGAGGTTATTCATTTAGACGTGTTGGCACATTTGCGGGAAGTTTGTATGTAATTTCGAAAAGATACTTTGGCGTCGTCGGCAAGTCTTGATCGGAGGTTGGTAGAATTCAGATGAGACCGCTCGATTTTTGATTGAGCTAATTTACTATTTGAGCTCATTTACTTCAATTCCTATGCGAGGTGTTAAACATATGTCAACTGACAAAACACGTCAGATATTTTGATGAAAAATTTATCAGTGGACAGCTTGTTGGATCGTCGAATCTCGACTCTCTACAAGCCAAGACGTCATTGATA</canonical>
            <polymorphic>ACGTCAGTATGATGTTTCAACTGGGATCTCCTGGATTTGGATTCAAGAAGCTGGTGTACGACGTTTTTGTGCAACCTGGAATCTCAAGTTGAAAGCTGAAATTGATTTTTATTGATGAATAAAATTATTTATATTCACATCAGTTCCAATAACATATAAATCTCCACTCAACCTATCATAATTTTCTGATCTCTGTCTCTAGATTATGCTAAAACGTGCATTTTCGAAATATCCAAAAGCGCGATTGTTTTTTCTGGTTTCTGTCATATAATTTCTGATTTCTTGAAATTTTCTGGTTTGTGATAAGCCGACCAACGACTGAATTTAGTTTTGTTCCTGATACACCACCATTTGCATACAAAGTACGAAGACTCACGGAGCAGAGAAAAAGAGATTGTGTTTTTTGAATTTGCGCTTTTTATTTTTAGTTCTCGGATTATTTGACCAATTTTGAGGGATATTAGGAATTTCAATTAAATAAGATGACTAATTTTTAGAARATAAGTATCAAGATTTTCAGATTTTTGTTTCTTTATTGGAAATCTGATTACCAAATTGGGATTGAAAAATCAAAGAGATCAACTAGGACTGGCGAAACGAATTGAAATTACGGTTAACAAGAAAAATAAGATTTCAGTGAAAATTAAAAATAGGGAAATTTGTTACTTATGTCAAAATGTCAAAATCAGTCAACGTCTCTTCAAGAGGTTATTCATTTAGACGTGTTGGCACATTTGCGGGAAGTTTGTATGTAATTTCGAAAAGATACTTTGGCGTCGTCGGCAAGTCTTGATCGGAGGTTGGTAGAATTCAGATGAGACCGCTCGATTTTTGATTGAGCTAATTTACTATTTGAGCTCATTTACTTCAATTCCTATGCGAGGTGTTAAACATATGTCAACTGACAAAACACGTCAGATATTTTGATGAAAAATTTATCAGTGGACAGCTTGTTGGATCGTCGAATCTCGACTCTCTACAAGCCAAGACGTCATTGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATNNNNATC</site>
                <isoschizomers>
                    <enzyme>BsaBI</enzyme>
                    <enzyme>Bse8I</enzyme>
                    <enzyme>BseJI</enzyme>
                    <enzyme>BsiBI</enzyme>
                    <enzyme>BsrBRI</enzyme>
                    <enzyme>MamI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTGCGCTTTTTATTTTTAGTT</pcr_primer_p1>
		<pcr_primer_p2>TTCCCTATTTTTAATTTTCACTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTGCGCTTTTTATTTTTAGTTCTCGGATTATTTGACCAATTTTGAGGGATATTAGGAATTTCAATTAAATAAGATGACTAATTTTTAGAAGATAAGTATCAAGATTTTCAGATTTTTGTTTCTTTATTGGAAATCTGATTACCAAATTGGGATTGAAAAATCAAAGAGATCAACTAGGACTGGCGAAACGAATTGAAATTACGGTTAACAAGAAAAATAAGATTTCAGTGAAAATTAAAAATAGGGAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTGCGCTTTTTATTTTTAGTTCTCGGATTATTTGACCAATTTTGAGGGATATTAGGAATTTCAATTAAATAAGATGACTAATTTTTAGAARATAAGTATCAAGATTTTCAGATTTTTGTTTCTTTATTGGAAATCTGATTACCAAATTGGGATTGAAAAATCAAAGAGATCAACTAGGACTGGCGAAACGAATTGAAATTACGGTTAACAAGAAAAATAAGATTTCAGTGAAAATTAAAAATAGGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31592</snp_id>
        <super_contig>c006500815.Contig1</super_contig>
        <contig_pos>714171</contig_pos>
        <strand></strand>
        <context>TAGGACTGGC[G/A]AAACGAATTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTGATTACCAAATTGGGATTGAAAAATCAAAGAGATCAACTAGGACTGGC</left_flank>
        <right_flank>AAACGAATTGAAATTACGGTTAACAAGAAAAATAAGATTTCAGTGAAAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTGAAATTGATTTTTATTGATGAATAAAATTATTTATATTCACATCAGTTCCAATAACATATAAATCTCCACTCAACCTATCATAATTTTCTGATCTCTGTCTCTAGATTATGCTAAAACGTGCATTTTCGAAATATCCAAAAGCGCGATTGTTTTTTCTGGTTTCTGTCATATAATTTCTGATTTCTTGAAATTTTCTGGTTTGTGATAAGCCGACCAACGACTGAATTTAGTTTTGTTCCTGATACACCACCATTTGCATACAAAGTACGAAGACTCACGGAGCAGAGAAAAAGAGATTGTGTTTTTTGAATTTGCGCTTTTTATTTTTAGTTCTCGGATTATTTGACCAATTTTGAGGGATATTAGGAATTTCAATTAAATAAGATGACTAATTTTTAGAAGATAAGTATCAAGATTTTCAGATTTTTGTTTCTTTATTGGAAATCTGATTACCAAATTGGGATTGAAAAATCAAAGAGATCAACTAGGACTGGCGAAACGAATTGAAATTACGGTTAACAAGAAAAATAAGATTTCAGTGAAAATTAAAAATAGGGAAATTTGTTACTTATGTCAAAATGTCAAAATCAGTCAACGTCTCTTCAAGAGGTTATTCATTTAGACGTGTTGGCACATTTGCGGGAAGTTTGTATGTAATTTCGAAAAGATACTTTGGCGTCGTCGGCAAGTCTTGATCGGAGGTTGGTAGAATTCAGATGAGACCGCTCGATTTTTGATTGAGCTAATTTACTATTTGAGCTCATTTACTTCAATTCCTATGCGAGGTGTTAAACATATGTCAACTGACAAAACACGTCAGATATTTTGATGAAAAATTTATCAGTGGACAGCTTGTTGGATCGTCGAATCTCGACTCTCTACAAGCCAAGACGTCATTGATAGCCTGCTAGATTGGAATTTCAGTTTTCCTAAAGCCAACAAGAAGTTTATCAAACAAGTCTTATCATTCACAGATACACTATGAAGGAAACCGTC</canonical>
            <polymorphic>GCTGAAATTGATTTTTATTGATGAATAAAATTATTTATATTCACATCAGTTCCAATAACATATAAATCTCCACTCAACCTATCATAATTTTCTGATCTCTGTCTCTAGATTATGCTAAAACGTGCATTTTCGAAATATCCAAAAGCGCGATTGTTTTTTCTGGTTTCTGTCATATAATTTCTGATTTCTTGAAATTTTCTGGTTTGTGATAAGCCGACCAACGACTGAATTTAGTTTTGTTCCTGATACACCACCATTTGCATACAAAGTACGAAGACTCACGGAGCAGAGAAAAAGAGATTGTGTTTTTTGAATTTGCGCTTTTTATTTTTAGTTCTCGGATTATTTGACCAATTTTGAGGGATATTAGGAATTTCAATTAAATAAGATGACTAATTTTTAGAAGATAAGTATCAAGATTTTCAGATTTTTGTTTCTTTATTGGAAATCTGATTACCAAATTGGGATTGAAAAATCAAAGAGATCAACTAGGACTGGCRAAACGAATTGAAATTACGGTTAACAAGAAAAATAAGATTTCAGTGAAAATTAAAAATAGGGAAATTTGTTACTTATGTCAAAATGTCAAAATCAGTCAACGTCTCTTCAAGAGGTTATTCATTTAGACGTGTTGGCACATTTGCGGGAAGTTTGTATGTAATTTCGAAAAGATACTTTGGCGTCGTCGGCAAGTCTTGATCGGAGGTTGGTAGAATTCAGATGAGACCGCTCGATTTTTGATTGAGCTAATTTACTATTTGAGCTCATTTACTTCAATTCCTATGCGAGGTGTTAAACATATGTCAACTGACAAAACACGTCAGATATTTTGATGAAAAATTTATCAGTGGACAGCTTGTTGGATCGTCGAATCTCGACTCTCTACAAGCCAAGACGTCATTGATAGCCTGCTAGATTGGAATTTCAGTTTTCCTAAAGCCAACAAGAAGTTTATCAAACAAGTCTTATCATTCACAGATACACTATGAAGGAAACCGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGCGCTTTTTATTTTTAGTT</pcr_primer_p1>
		<pcr_primer_p2>TTCCCTATTTTTAATTTTCACTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTGCGCTTTTTATTTTTAGTTCTCGGATTATTTGACCAATTTTGAGGGATATTAGGAATTTCAATTAAATAAGATGACTAATTTTTAGAAGATAAGTATCAAGATTTTCAGATTTTTGTTTCTTTATTGGAAATCTGATTACCAAATTGGGATTGAAAAATCAAAGAGATCAACTAGGACTGGCGAAACGAATTGAAATTACGGTTAACAAGAAAAATAAGATTTCAGTGAAAATTAAAAATAGGGAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTGCGCTTTTTATTTTTAGTTCTCGGATTATTTGACCAATTTTGAGGGATATTAGGAATTTCAATTAAATAAGATGACTAATTTTTAGAAGATAAGTATCAAGATTTTCAGATTTTTGTTTCTTTATTGGAAATCTGATTACCAAATTGGGATTGAAAAATCAAAGAGATCAACTAGGACTGGCRAAACGAATTGAAATTACGGTTAACAAGAAAAATAAGATTTCAGTGAAAATTAAAAATAGGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31593</snp_id>
        <super_contig>c006600988.Contig2</super_contig>
        <contig_pos>53954</contig_pos>
        <strand></strand>
        <context>tcattaaatc[A/T]gggttttcat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTATTATTTTCCCCAGAAAATGTAGCGTGAACATTTATTTTCATTAAATC</left_flank>
        <right_flank>GGGTTTTCATGAAAAATCCACAATTTTTTGATTTATTTTTTAACGTTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGATCCATTCATCTATTGTACTGTGCGTATGTATATTTCTCCACTTTATTCTTTTCCGGGGAAGAAATCGGAATGGGAAAGAAATAAGCAAGTATTAGAATACGAAAAGGTAGTAAAATAGAAGAAAGATTTGCCATTTTTCTGCCTCTTTCATCGTTTTAAAAATGGTGAATTAGTGACGACGAGGACGTCCTTTTTACTTCTCTGGGTTTCCAAATTATACATTGTTCTGCTTTCCCCCGAGCTGCTACTGTCTTCAGTTGAGGTCTTGAGAAGAATTCAGAATACGAATACACTTAAACATAAATCACTCAATTCTGAATATAAGAGAGATCAAATTTCAAAATTTTCACGTTTGAGAGAAAATAATCGAAAAAGAGAAATATTATGAGAATTTACACATTAAAAATAATGATTACAAAAAAAGTTATTTTTAAATGGGAATTTTATTATTTTCCCCAGAAAATGTAGCGTGAACATTTATTTTCATTAAATCAGGGTTTTCATGAAAAATCCACAATTTTTTGATTTATTTTTTAACGTTTTTATTAAAATTAAAGAACAAAAACACAGAATCGTTCTGCAGAACATATCTATGAGAGAAAAATATGCCGCGAAAGTTAAATCACAGAATCGTTCTGCGGAACGATTCTGTGAAGAACACAGTTTTGAATAGAAAAAAAATTTCAATTTTTTCTGCGTGAGCACAGTATTTTTCAAAAAATTCGTTTTGAAACTCCAAACGTGAAAATTTTGAAATTTGATCCCTCTTATATGCAGGCATTTTTAATGCCGATGCCTTCAGAAGACATGACTACGGTTCCACTGTCACGGTCATCAGTTAATCGTTTCCCTTGCGTTTTTTTGTTTTTTTTTGTGATTTGGATAATAGGAATAGAAAACAAGAAGGTCAAGTGACTCTGAAGCAAGGTTGCAATTCTGAGATTTTCAAGAATAGTCGTGAAGTCCAGGCCTTTGTCGGTTATCCGAATGTCAT</canonical>
            <polymorphic>TTTCGATCCATTCATCTATTGTACTGTGCGTATGTATATTTCTCCACTTTATTCTTTTCCGGGGAAGAAATCGGAATGGGAAAGAAATAAGCAAGTATTAGAATACGAAAAGGTAGTAAAATAGAAGAAAGATTTGCCATTTTTCTGCCTCTTTCATCGTTTTAAAAATGGTGAATTAGTGACGACGAGGACGTCCTTTTTACTTCTCTGGGTTTCCAAATTATACATTGTTCTGCTTTCCCCCGAGCTGCTACTGTCTTCAGTTGAGGTCTTGAGAAGAATTCAGAATACGAATACACTTAAACATAAATCACTCAATTCTGAATATAAGAGAGATCAAATTTCAAAATTTTCACGTTTGAGAGAAAATAATCGAAAAAGAGAAATATTATGAGAATTTACACATTAAAAATAATGATTACAAAAAAAGTTATTTTTAAATGGGAATTTTATTATTTTCCCCAGAAAATGTAGCGTGAACATTTATTTTCATTAAATCWGGGTTTTCATGAAAAATCCACAATTTTTTGATTTATTTTTTAACGTTTTTATTAAAATTAAAGAACAAAAACACAGAATCGTTCTGCAGAACATATCTATGAGAGAAAAATATGCCGCGAAAGTTAAATCACAGAATCGTTCTGCGGAACGATTCTGTGAAGAACACAGTTTTGAATAGAAAAAAAATTTCAATTTTTTCTGCGTGAGCACAGTATTTTTCAAAAAATTCGTTTTGAAACTCCAAACGTGAAAATTTTGAAATTTGATCCCTCTTATATGCAGGCATTTTTAATGCCGATGCCTTCAGAAGACATGACTACGGTTCCACTGTCACGGTCATCAGTTAATCGTTTCCCTTGCGTTTTTTTGTTTTTTTTTGTGATTTGGATAATAGGAATAGAAAACAAGAAGGTCAAGTGACTCTGAAGCAAGGTTGCAATTCTGAGATTTTCAAGAATAGTCGTGAAGTCCAGGCCTTTGTCGGTTATCCGAATGTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTTAAACATAAATCACTCAATTCT</pcr_primer_p1>
		<pcr_primer_p2>CAGTGGAACCGTAGTCATGT</pcr_primer_p2>
		<pcr_amplicon_size>535</pcr_amplicon_size>
		<canonical_amplicon>CACTTAAACATAAATCACTCAATTCTGAATATAAGAGAGATCAAATTTCAAAATTTTCACGTTTGAGAGAAAATAATCGAAAAAGAGAAATATTATGAGAATTTACACATTAAAAATAATGATTACAAAAAAAGTTATTTTTAAATGGGAATTTTATTATTTTCCCCAGAAAATGTAGCGTGAACATTTATTTTCATTAAATCAGGGTTTTCATGAAAAATCCACAATTTTTTGATTTATTTTTTAACGTTTTTATTAAAATTAAAGAACAAAAACACAGAATCGTTCTGCAGAACATATCTATGAGAGAAAAATATGCCGCGAAAGTTAAATCACAGAATCGTTCTGCGGAACGATTCTGTGAAGAACACAGTTTTGAATAGAAAAAAAATTTCAATTTTTTCTGCGTGAGCACAGTATTTTTCAAAAAATTCGTTTTGAAACTCCAAACGTGAAAATTTTGAAATTTGATCCCTCTTATATGCAGGCATTTTTAATGCCGATGCCTTCAGAAGACATGACTACGGTTCCACTG</canonical_amplicon>
		<polymorphic_amplicon>CACTTAAACATAAATCACTCAATTCTGAATATAAGAGAGATCAAATTTCAAAATTTTCACGTTTGAGAGAAAATAATCGAAAAAGAGAAATATTATGAGAATTTACACATTAAAAATAATGATTACAAAAAAAGTTATTTTTAAATGGGAATTTTATTATTTTCCCCAGAAAATGTAGCGTGAACATTTATTTTCATTAAATCWGGGTTTTCATGAAAAATCCACAATTTTTTGATTTATTTTTTAACGTTTTTATTAAAATTAAAGAACAAAAACACAGAATCGTTCTGCAGAACATATCTATGAGAGAAAAATATGCCGCGAAAGTTAAATCACAGAATCGTTCTGCGGAACGATTCTGTGAAGAACACAGTTTTGAATAGAAAAAAAATTTCAATTTTTTCTGCGTGAGCACAGTATTTTTCAAAAAATTCGTTTTGAAACTCCAAACGTGAAAATTTTGAAATTTGATCCCTCTTATATGCAGGCATTTTTAATGCCGATGCCTTCAGAAGACATGACTACGGTTCCACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31594</snp_id>
        <super_contig>c006600988.Contig2</super_contig>
        <contig_pos>54198</contig_pos>
        <strand>+</strand>
        <context>ttgaaactcc[A/G]aacgtgaaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTCTGCGTGAGCACAGTATTTTTCAAAAAATTCGTTTTGAAACTCC</left_flank>
        <right_flank>AACGTGAAAATTTTGAAATTTGATCCCTCTTATATGCAGGCATTTTTAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCTGCTACTGTCTTCAGTTGAGGTCTTGAGAAGAATTCAGAATACGAATACACTTAAACATAAATCACTCAATTCTGAATATAAGAGAGATCAAATTTCAAAATTTTCACGTTTGAGAGAAAATAATCGAAAAAGAGAAATATTATGAGAATTTACACATTAAAAATAATGATTACAAAAAAAGTTATTTTTAAATGGGAATTTTATTATTTTCCCCAGAAAATGTAGCGTGAACATTTATTTTCATTAAATCAGGGTTTTCATGAAAAATCCACAATTTTTTGATTTATTTTTTAACGTTTTTATTAAAATTAAAGAACAAAAACACAGAATCGTTCTGCAGAACATATCTATGAGAGAAAAATATGCCGCGAAAGTTAAATCACAGAATCGTTCTGCGGAACGATTCTGTGAAGAACACAGTTTTGAATAGAAAAAAAATTTCAATTTTTTCTGCGTGAGCACAGTATTTTTCAAAAAATTCGTTTTGAAACTCCAAACGTGAAAATTTTGAAATTTGATCCCTCTTATATGCAGGCATTTTTAATGCCGATGCCTTCAGAAGACATGACTACGGTTCCACTGTCACGGTCATCAGTTAATCGTTTCCCTTGCGTTTTTTTGTTTTTTTTTGTGATTTGGATAATAGGAATAGAAAACAAGAAGGTCAAGTGACTCTGAAGCAAGGTTGCAATTCTGAGATTTTCAAGAATAGTCGTGAAGTCCAGGCCTTTGTCGGTTATCCGAATGTCATTCGTTACGTAACGAATTGGTAAGATTTCGATCTTCTAGTCAGTTTCGTCTTATTTAATGAACCACGAAGATCTGTAATCTACATTATTAGTTTTAGAGCTAAAAAACTCGCAAGTCGCAAGTTTTTTGTTTCGAAAAGCTTTTTCTTCAAAAGTTCATTTAGTATATAAGTTCAGAATCGGTAGTTCTGGACATTTTACTGTAACTATGGACAACTAAAGTTATAGTGGGAGGAAAATATATTC</canonical>
            <polymorphic>GAGCTGCTACTGTCTTCAGTTGAGGTCTTGAGAAGAATTCAGAATACGAATACACTTAAACATAAATCACTCAATTCTGAATATAAGAGAGATCAAATTTCAAAATTTTCACGTTTGAGAGAAAATAATCGAAAAAGAGAAATATTATGAGAATTTACACATTAAAAATAATGATTACAAAAAAAGTTATTTTTAAATGGGAATTTTATTATTTTCCCCAGAAAATGTAGCGTGAACATTTATTTTCATTAAATCAGGGTTTTCATGAAAAATCCACAATTTTTTGATTTATTTTTTAACGTTTTTATTAAAATTAAAGAACAAAAACACAGAATCGTTCTGCAGAACATATCTATGAGAGAAAAATATGCCGCGAAAGTTAAATCACAGAATCGTTCTGCGGAACGATTCTGTGAAGAACACAGTTTTGAATAGAAAAAAAATTTCAATTTTTTCTGCGTGAGCACAGTATTTTTCAAAAAATTCGTTTTGAAACTCCRAACGTGAAAATTTTGAAATTTGATCCCTCTTATATGCAGGCATTTTTAATGCCGATGCCTTCAGAAGACATGACTACGGTTCCACTGTCACGGTCATCAGTTAATCGTTTCCCTTGCGTTTTTTTGTTTTTTTTTGTGATTTGGATAATAGGAATAGAAAACAAGAAGGTCAAGTGACTCTGAAGCAAGGTTGCAATTCTGAGATTTTCAAGAATAGTCGTGAAGTCCAGGCCTTTGTCGGTTATCCGAATGTCATTCGTTACGTAACGAATTGGTAAGATTTCGATCTTCTAGTCAGTTTCGTCTTATTTAATGAACCACGAAGATCTGTAATCTACATTATTAGTTTTAGAGCTAAAAAACTCGCAAGTCGCAAGTTTTTTGTTTCGAAAAGCTTTTTCTTCAAAAGTTCATTTAGTATATAAGTTCAGAATCGGTAGTTCTGGACATTTTACTGTAACTATGGACAACTAAAGTTATAGTGGGAGGAAAATATATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTTAAACATAAATCACTCAATTCT</pcr_primer_p1>
		<pcr_primer_p2>CAGTGGAACCGTAGTCATGT</pcr_primer_p2>
		<pcr_amplicon_size>535</pcr_amplicon_size>
		<canonical_amplicon>CACTTAAACATAAATCACTCAATTCTGAATATAAGAGAGATCAAATTTCAAAATTTTCACGTTTGAGAGAAAATAATCGAAAAAGAGAAATATTATGAGAATTTACACATTAAAAATAATGATTACAAAAAAAGTTATTTTTAAATGGGAATTTTATTATTTTCCCCAGAAAATGTAGCGTGAACATTTATTTTCATTAAATCAGGGTTTTCATGAAAAATCCACAATTTTTTGATTTATTTTTTAACGTTTTTATTAAAATTAAAGAACAAAAACACAGAATCGTTCTGCAGAACATATCTATGAGAGAAAAATATGCCGCGAAAGTTAAATCACAGAATCGTTCTGCGGAACGATTCTGTGAAGAACACAGTTTTGAATAGAAAAAAAATTTCAATTTTTTCTGCGTGAGCACAGTATTTTTCAAAAAATTCGTTTTGAAACTCCAAACGTGAAAATTTTGAAATTTGATCCCTCTTATATGCAGGCATTTTTAATGCCGATGCCTTCAGAAGACATGACTACGGTTCCACTG</canonical_amplicon>
		<polymorphic_amplicon>CACTTAAACATAAATCACTCAATTCTGAATATAAGAGAGATCAAATTTCAAAATTTTCACGTTTGAGAGAAAATAATCGAAAAAGAGAAATATTATGAGAATTTACACATTAAAAATAATGATTACAAAAAAAGTTATTTTTAAATGGGAATTTTATTATTTTCCCCAGAAAATGTAGCGTGAACATTTATTTTCATTAAATCAGGGTTTTCATGAAAAATCCACAATTTTTTGATTTATTTTTTAACGTTTTTATTAAAATTAAAGAACAAAAACACAGAATCGTTCTGCAGAACATATCTATGAGAGAAAAATATGCCGCGAAAGTTAAATCACAGAATCGTTCTGCGGAACGATTCTGTGAAGAACACAGTTTTGAATAGAAAAAAAATTTCAATTTTTTCTGCGTGAGCACAGTATTTTTCAAAAAATTCGTTTTGAAACTCCRAACGTGAAAATTTTGAAATTTGATCCCTCTTATATGCAGGCATTTTTAATGCCGATGCCTTCAGAAGACATGACTACGGTTCCACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31595</snp_id>
        <super_contig>c006600988.Contig2</super_contig>
        <contig_pos>55649</contig_pos>
        <strand>+</strand>
        <context>ACGACTACCC[A/G]TCAATCTCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCATAAATCACATCGTTTTCCTTTCAATTCTACCGCTACACGACTACCC</left_flank>
        <right_flank>TCAATCTCTGAACTCCCTCTTTTTTTTCACATTAGAATGTCAAAGCACGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGAGTGATGATCGAGAATATATGCAAATTGTTTTCATTTTCTCTGTGTATCGTCTTCTTAAACGTTATTTCTCATATGTGTTGACCGTTCGGATAGTCTGCTCAACTCGAGTGGAAAGTCGAAGAGAGCATGTGCACTATTTCTCTTTGTGTTATTGGTTTCTATCTATTGTTTCTCGTTCTATTGTAGAATTTTTGCCACGTGTACTGTTCACAGTGTCGATCTAAAATAGCTGTTCACAGTGTCGATCTAAAATTTTAGTAGGCGAACATACTAGAAAGATTATCCATGAAGTCGACTACAATATCAAAGTCCTTCAAAAAAAAAAGAAAAGCCTAATTTTGACTTGTAAAATTGATTTTTAATCTTCTATTCAATTCAAATCTGAATTAGAGCTCTTTCCCAACAAGACCATTCTTGACTCTAATTATCACTGCAGTGCAAATTTTCATAAATCACATCGTTTTCCTTTCAATTCTACCGCTACACGACTACCCTTCAATCTCTGAACTCCCTCTTTTTTTTCACATTAGAATGTCAAAGCACGATCCGATTTACCAGAATTTCCGAAAAAGATAAAAAAAAAGAGGGCCGCCCAAAAATGTGTAGATTGGATTAGGAGAATGCCTTTTGTTCTCGACAATCAATTCTCGAAGTTATATCCTTTTCGATTTTCTTATTAGATTATTTTTCGCTTCTGGATAATGAGTTCCGCCTTGTAGGATGGTTTTGCCTTCATATAGTTGAACGAATCTAAAAATGGAAGAGCCATTGGTTTTAATTTTCTTTCTAATTTTTTTAGGTTACGGTAGTTGACGTTGTAGGCCCTATGACCCGGCTACCGGTGTTTTTCTTCCGCAGCTCCGATTTTTTGTACTGGCATGATACTTTCACCGTTTTTATTTTGTAGATCAAGAACGAGCAGAACAGCCTTTCGACAACTTCTAGGATATCTTTTCATATTGTTTCTCTCTGGCTGGCGAACCCATGATTTTAAG</canonical>
            <polymorphic>CAAGAGTGATGATCGAGAATATATGCAAATTGTTTTCATTTTCTCTGTGTATCGTCTTCTTAAACGTTATTTCTCATATGTGTTGACCGTTCGGATAGTCTGCTCAACTCGAGTGGAAAGTCGAAGAGAGCATGTGCACTATTTCTCTTTGTGTTATTGGTTTCTATCTATTGTTTCTCGTTCTATTGTAGAATTTTTGCCACGTGTACTGTTCACAGTGTCGATCTAAAATAGCTGTTCACAGTGTCGATCTAAAATTTTAGTAGGCGAACATACTAGAAAGATTATCCATGAAGTCGACTACAATATCAAAGTCCTTCAAAAAAAAAAGAAAAGCCTAATTTTGACTTGTAAAATTGATTTTTAATCTTCTATTCAATTCAAATCTGAATTAGAGCTCTTTCCCAACAAGACCATTCTTGACTCTAATTATCACTGCAGTGCAAATTTTCATAAATCACATCGTTTTCCTTTCAATTCTACCGCTACACGACTACCCRTCAATCTCTGAACTCCCTCTTTTTTTTCACATTAGAATGTCAAAGCACGATCCGATTTACCAGAATTTCCGAAAAAGATAAAAAAAAAGAGGGCCGCCCAAAAATGTGTAGATTGGATTAGGAGAATGCCTTTTGTTCTCGACAATCAATTCTCGAAGTTATATCCTTTTCGATTTTCTTATTAGATTATTTTTCGCTTCTGGATAATGAGTTCCGCCTTGTAGGATGGTTTTGCCTTCATATAGTTGAACGAATCTAAAAATGGAAGAGCCATTGGTTTTAATTTTCTTTCTAATTTTTTTAGGTTACGGTAGTTGACGTTGTAGGCCCTATGACCCGGCTACCGGTGTTTTTCTTCCGCAGCTCCGATTTTTTGTACTGGCATGATACTTTCACCGTTTTTATTTTGTAGATCAAGAACGAGCAGAACAGCCTTTCGACAACTTCTAGGATATCTTTTCATATTGTTTCTCTCTGGCTGGCGAACCCATGATTTTAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGCAAATTTTCATAAATCACAT</pcr_primer_p1>
		<pcr_primer_p2>TCTAATAAGAAAATCGAAAAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTGCAAATTTTCATAAATCACATCGTTTTCCTTTCAATTCTACCGCTACACGACTACCCTTCAATCTCTGAACTCCCTCTTTTTTTTCACATTAGAATGTCAAAGCACGATCCGATTTACCAGAATTTCCGAAAAAGATAAAAAAAAAGAGGGCCGCCCAAAAATGTGTAGATTGGATTAGGAGAATGCCTTTTGTTCTCGACAATCAATTCTCGAAGTTATATCCTTTTCGATTTTCTTATTAGA</canonical_amplicon>
		<polymorphic_amplicon>GTGCAAATTTTCATAAATCACATCGTTTTCCTTTCAATTCTACCGCTACACGACTACCCRTCAATCTCTGAACTCCCTCTTTTTTTTCACATTAGAATGTCAAAGCACGATCCGATTTACCAGAATTTCCGAAAAAGATAAAAAAAAAGAGGGCCGCCCAAAAATGTGTAGATTGGATTAGGAGAATGCCTTTTGTTCTCGACAATCAATTCTCGAAGTTATATCCTTTTCGATTTTCTTATTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31596</snp_id>
        <super_contig>c006600988.Contig2</super_contig>
        <contig_pos>55721</contig_pos>
        <strand>+</strand>
        <context>AGAATTTCCG[A/T]AAAAGATAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTTCACATTAGAATGTCAAAGCACGATCCGATTTACCAGAATTTCCG</left_flank>
        <right_flank>AAAAGATAAAAAAAAAGAGGGCCGCCCAAAAATGTGTAGATTGGATTAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCATATGTGTTGACCGTTCGGATAGTCTGCTCAACTCGAGTGGAAAGTCGAAGAGAGCATGTGCACTATTTCTCTTTGTGTTATTGGTTTCTATCTATTGTTTCTCGTTCTATTGTAGAATTTTTGCCACGTGTACTGTTCACAGTGTCGATCTAAAATAGCTGTTCACAGTGTCGATCTAAAATTTTAGTAGGCGAACATACTAGAAAGATTATCCATGAAGTCGACTACAATATCAAAGTCCTTCAAAAAAAAAAGAAAAGCCTAATTTTGACTTGTAAAATTGATTTTTAATCTTCTATTCAATTCAAATCTGAATTAGAGCTCTTTCCCAACAAGACCATTCTTGACTCTAATTATCACTGCAGTGCAAATTTTCATAAATCACATCGTTTTCCTTTCAATTCTACCGCTACACGACTACCCTTCAATCTCTGAACTCCCTCTTTTTTTTCACATTAGAATGTCAAAGCACGATCCGATTTACCAGAATTTCCGAAAAAGATAAAAAAAAAGAGGGCCGCCCAAAAATGTGTAGATTGGATTAGGAGAATGCCTTTTGTTCTCGACAATCAATTCTCGAAGTTATATCCTTTTCGATTTTCTTATTAGATTATTTTTCGCTTCTGGATAATGAGTTCCGCCTTGTAGGATGGTTTTGCCTTCATATAGTTGAACGAATCTAAAAATGGAAGAGCCATTGGTTTTAATTTTCTTTCTAATTTTTTTAGGTTACGGTAGTTGACGTTGTAGGCCCTATGACCCGGCTACCGGTGTTTTTCTTCCGCAGCTCCGATTTTTTGTACTGGCATGATACTTTCACCGTTTTTATTTTGTAGATCAAGAACGAGCAGAACAGCCTTTCGACAACTTCTAGGATATCTTTTCATATTGTTTCTCTCTGGCTGGCGAACCCATGATTTTAAGCTCGTTCTCTTACAATACTCGTTCTTACTCGTTCTTGTTCTCGTTCTCTTACGTTCTCTTCTTAAGCTCGTT</canonical>
            <polymorphic>CTCATATGTGTTGACCGTTCGGATAGTCTGCTCAACTCGAGTGGAAAGTCGAAGAGAGCATGTGCACTATTTCTCTTTGTGTTATTGGTTTCTATCTATTGTTTCTCGTTCTATTGTAGAATTTTTGCCACGTGTACTGTTCACAGTGTCGATCTAAAATAGCTGTTCACAGTGTCGATCTAAAATTTTAGTAGGCGAACATACTAGAAAGATTATCCATGAAGTCGACTACAATATCAAAGTCCTTCAAAAAAAAAAGAAAAGCCTAATTTTGACTTGTAAAATTGATTTTTAATCTTCTATTCAATTCAAATCTGAATTAGAGCTCTTTCCCAACAAGACCATTCTTGACTCTAATTATCACTGCAGTGCAAATTTTCATAAATCACATCGTTTTCCTTTCAATTCTACCGCTACACGACTACCCTTCAATCTCTGAACTCCCTCTTTTTTTTCACATTAGAATGTCAAAGCACGATCCGATTTACCAGAATTTCCGWAAAAGATAAAAAAAAAGAGGGCCGCCCAAAAATGTGTAGATTGGATTAGGAGAATGCCTTTTGTTCTCGACAATCAATTCTCGAAGTTATATCCTTTTCGATTTTCTTATTAGATTATTTTTCGCTTCTGGATAATGAGTTCCGCCTTGTAGGATGGTTTTGCCTTCATATAGTTGAACGAATCTAAAAATGGAAGAGCCATTGGTTTTAATTTTCTTTCTAATTTTTTTAGGTTACGGTAGTTGACGTTGTAGGCCCTATGACCCGGCTACCGGTGTTTTTCTTCCGCAGCTCCGATTTTTTGTACTGGCATGATACTTTCACCGTTTTTATTTTGTAGATCAAGAACGAGCAGAACAGCCTTTCGACAACTTCTAGGATATCTTTTCATATTGTTTCTCTCTGGCTGGCGAACCCATGATTTTAAGCTCGTTCTCTTACAATACTCGTTCTTACTCGTTCTTGTTCTCGTTCTCTTACGTTCTCTTCTTAAGCTCGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>297 295 205 121 44 21 17</canonical_bands>
                <polymorphic_bands>314 295 205 121 44 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCTCTGAACTCCCTCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTTCAACTATATGAAGGCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATCTCTGAACTCCCTCTTTTTTTTCACATTAGAATGTCAAAGCACGATCCGATTTACCAGAATTTCCGAAAAAGATAAAAAAAAAGAGGGCCGCCCAAAAATGTGTAGATTGGATTAGGAGAATGCCTTTTGTTCTCGACAATCAATTCTCGAAGTTATATCCTTTTCGATTTTCTTATTAGATTATTTTTCGCTTCTGGATAATGAGTTCCGCCTTGTAGGATGGTTTTGCCTTCATATAGTTGAAC</canonical_amplicon>
		<polymorphic_amplicon>AATCTCTGAACTCCCTCTTTTTTTTCACATTAGAATGTCAAAGCACGATCCGATTTACCAGAATTTCCGWAAAAGATAAAAAAAAAGAGGGCCGCCCAAAAATGTGTAGATTGGATTAGGAGAATGCCTTTTGTTCTCGACAATCAATTCTCGAAGTTATATCCTTTTCGATTTTCTTATTAGATTATTTTTCGCTTCTGGATAATGAGTTCCGCCTTGTAGGATGGTTTTGCCTTCATATAGTTGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31597</snp_id>
        <super_contig>c006600988.Contig2</super_contig>
        <contig_pos>66881</contig_pos>
        <strand>+</strand>
        <context>TTTAATTGGT[A/G]GGACCTAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACAAAACATTGTGAAAGTTCAAACTTGAAGCTCTATATTTTAATTGGT</left_flank>
        <right_flank>GGACCTAAATCTTTTCGGCCACCTTCTTACTTTAAATCGAGTAAGTTTCA</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAATTCGTTTTTGTCTCCTTCTCTAAAACTCGACCTCTCGGTCTTTTAGATTCGTGCAGAGAGAAAATAAGTCGTTTATTATTTGTTCGTCTCTACCGATGACTCATCGCCAAAGCGAAAATTGTATGTATATCCATCTTTGTGCAACATTTCAGTATTTATATTTGCATATGTATACAAAAGGCTAAAAAGTGTAAAGTTCGATCTAGCAAAATAATTGAAATTCTTCTGATTGACAAAAAAAAATTAGGTTTTTTGAAGAACTTTGATTTTTGCATGATAGTATTTTATACATTTCGGATGTTCATCAATTTTTCGTAATTCTATTTTACACCGAGATGCCGTACCGCTCAAAGGTTATCCACTTTATCATAGTAGGACATAGCCGACTGTGGGTTCTCTAAAAGTATAATGTATTTTGACGAATAGGTCTGAAAAGTTAAAGGTTAAACAAAACATTGTGAAAGTTCAAACTTGAAGCTCTATATTTTAATTGGTGGGACCTAAATCTTTTCGGCCACCTTCTTACTTTAAATCGAGTAAGTTTCACGCACCCCCATTTTGTAGAAATTTCGTAGAAATTTTTTAGAAGAATCGTAACTAGGTCAATTCCGGTCCGTTTTGTCTGATTCTTTTTTTAATCGATAGAAAATCTCTATGACTATCCGGTTGCTAAAACTCGTCAGAATTGGTACTTTTACAGAGCCAGGGCCGAAGGCCCTGCATCTGATTCCACCTAATTGCGCGGCATAGCCGCGCCTAGCGGAGTCGGCCGTAGGCCGAGGACGCTAGTCCGGCATATGGGACAAAATATAATATATCCAATCAAATGTTTTTTGTTGATAATCTTTCAAAATAATTACGAAAAGTTTTGAAATGAAATGTATTGCGAAATTATCTAAATTCCATTTTGAATATTAGAATGTTTATCATTTGTAATCTATCCACTGAAACTCGCAAAACTCTTTAATCATTAAAAACCGAAAGAGTGTATGATAC</canonical>
            <polymorphic>TCAATTCGTTTTTGTCTCCTTCTCTAAAACTCGACCTCTCGGTCTTTTAGATTCGTGCAGAGAGAAAATAAGTCGTTTATTATTTGTTCGTCTCTACCGATGACTCATCGCCAAAGCGAAAATTGTATGTATATCCATCTTTGTGCAACATTTCAGTATTTATATTTGCATATGTATACAAAAGGCTAAAAAGTGTAAAGTTCGATCTAGCAAAATAATTGAAATTCTTCTGATTGACAAAAAAAAATTAGGTTTTTTGAAGAACTTTGATTTTTGCATGATAGTATTTTATACATTTCGGATGTTCATCAATTTTTCGTAATTCTATTTTACACCGAGATGCCGTACCGCTCAAAGGTTATCCACTTTATCATAGTAGGACATAGCCGACTGTGGGTTCTCTAAAAGTATAATGTATTTTGACGAATAGGTCTGAAAAGTTAAAGGTTAAACAAAACATTGTGAAAGTTCAAACTTGAAGCTCTATATTTTAATTGGTRGGACCTAAATCTTTTCGGCCACCTTCTTACTTTAAATCGAGTAAGTTTCACGCACCCCCATTTTGTAGAAATTTCGTAGAAATTTTTTAGAAGAATCGTAACTAGGTCAATTCCGGTCCGTTTTGTCTGATTCTTTTTTTAATCGATAGAAAATCTCTATGACTATCCGGTTGCTAAAACTCGTCAGAATTGGTACTTTTACAGAGCCAGGGCCGAAGGCCCTGCATCTGATTCCACCTAATTGCGCGGCATAGCCGCGCCTAGCGGAGTCGGCCGTAGGCCGAGGACGCTAGTCCGGCATATGGGACAAAATATAATATATCCAATCAAATGTTTTTTGTTGATAATCTTTCAAAATAATTACGAAAAGTTTTGAAATGAAATGTATTGCGAAATTATCTAAATTCCATTTTGAATATTAGAATGTTTATCATTTGTAATCTATCCACTGAAACTCGCAAAACTCTTTAATCATTAAAAACCGAAAGAGTGTATGATAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>501 282 217</canonical_bands>
                <polymorphic_bands>718 282</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>212 182 139 88 69 57 50 44 36 31 30 29 21 8 4</canonical_bands>
                <polymorphic_bands>212 182 139 88 69 57 57 50 44 31 30 29 8 4</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGGTTAAACAAAACATTGTGA</pcr_primer_p1>
		<pcr_primer_p2>GCAATACATTTCATTTCAAAACT</pcr_primer_p2>
		<pcr_amplicon_size>449</pcr_amplicon_size>
		<canonical_amplicon>AAAGGTTAAACAAAACATTGTGAAAGTTCAAACTTGAAGCTCTATATTTTAATTGGTGGGACCTAAATCTTTTCGGCCACCTTCTTACTTTAAATCGAGTAAGTTTCACGCACCCCCATTTTGTAGAAATTTCGTAGAAATTTTTTAGAAGAATCGTAACTAGGTCAATTCCGGTCCGTTTTGTCTGATTCTTTTTTTAATCGATAGAAAATCTCTATGACTATCCGGTTGCTAAAACTCGTCAGAATTGGTACTTTTACAGAGCCAGGGCCGAAGGCCCTGCATCTGATTCCACCTAATTGCGCGGCATAGCCGCGCCTAGCGGAGTCGGCCGTAGGCCGAGGACGCTAGTCCGGCATATGGGACAAAATATAATATATCCAATCAAATGTTTTTTGTTGATAATCTTTCAAAATAATTACGAAAAGTTTTGAAATGAAATGTATTGC</canonical_amplicon>
		<polymorphic_amplicon>AAAGGTTAAACAAAACATTGTGAAAGTTCAAACTTGAAGCTCTATATTTTAATTGGTRGGACCTAAATCTTTTCGGCCACCTTCTTACTTTAAATCGAGTAAGTTTCACGCACCCCCATTTTGTAGAAATTTCGTAGAAATTTTTTAGAAGAATCGTAACTAGGTCAATTCCGGTCCGTTTTGTCTGATTCTTTTTTTAATCGATAGAAAATCTCTATGACTATCCGGTTGCTAAAACTCGTCAGAATTGGTACTTTTACAGAGCCAGGGCCGAAGGCCCTGCATCTGATTCCACCTAATTGCGCGGCATAGCCGCGCCTAGCGGAGTCGGCCGTAGGCCGAGGACGCTAGTCCGGCATATGGGACAAAATATAATATATCCAATCAAATGTTTTTTGTTGATAATCTTTCAAAATAATTACGAAAAGTTTTGAAATGAAATGTATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31598</snp_id>
        <super_contig>c006600988.Contig2</super_contig>
        <contig_pos>66898</contig_pos>
        <strand></strand>
        <context>AAATCTTTTC[G/C]Gccaccttct</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AGTTCAAACTTGAAGCTCTATATTTTAATTGGTGGGACCTAAATCTTTTC</left_flank>
        <right_flank>GCCACCTTCTTACTTTAAATCGAGTAAGTTTCACGCACCCCCATTTTGTA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTCTCTAAAACTCGACCTCTCGGTCTTTTAGATTCGTGCAGAGAGAAAATAAGTCGTTTATTATTTGTTCGTCTCTACCGATGACTCATCGCCAAAGCGAAAATTGTATGTATATCCATCTTTGTGCAACATTTCAGTATTTATATTTGCATATGTATACAAAAGGCTAAAAAGTGTAAAGTTCGATCTAGCAAAATAATTGAAATTCTTCTGATTGACAAAAAAAAATTAGGTTTTTTGAAGAACTTTGATTTTTGCATGATAGTATTTTATACATTTCGGATGTTCATCAATTTTTCGTAATTCTATTTTACACCGAGATGCCGTACCGCTCAAAGGTTATCCACTTTATCATAGTAGGACATAGCCGACTGTGGGTTCTCTAAAAGTATAATGTATTTTGACGAATAGGTCTGAAAAGTTAAAGGTTAAACAAAACATTGTGAAAGTTCAAACTTGAAGCTCTATATTTTAATTGGTGGGACCTAAATCTTTTCGGCCACCTTCTTACTTTAAATCGAGTAAGTTTCACGCACCCCCATTTTGTAGAAATTTCGTAGAAATTTTTTAGAAGAATCGTAACTAGGTCAATTCCGGTCCGTTTTGTCTGATTCTTTTTTTAATCGATAGAAAATCTCTATGACTATCCGGTTGCTAAAACTCGTCAGAATTGGTACTTTTACAGAGCCAGGGCCGAAGGCCCTGCATCTGATTCCACCTAATTGCGCGGCATAGCCGCGCCTAGCGGAGTCGGCCGTAGGCCGAGGACGCTAGTCCGGCATATGGGACAAAATATAATATATCCAATCAAATGTTTTTTGTTGATAATCTTTCAAAATAATTACGAAAAGTTTTGAAATGAAATGTATTGCGAAATTATCTAAATTCCATTTTGAATATTAGAATGTTTATCATTTGTAATCTATCCACTGAAACTCGCAAAACTCTTTAATCATTAAAAACCGAAAGAGTGTATGATACCTGTCTTCGAGGAAAAA</canonical>
            <polymorphic>CCTTCTCTAAAACTCGACCTCTCGGTCTTTTAGATTCGTGCAGAGAGAAAATAAGTCGTTTATTATTTGTTCGTCTCTACCGATGACTCATCGCCAAAGCGAAAATTGTATGTATATCCATCTTTGTGCAACATTTCAGTATTTATATTTGCATATGTATACAAAAGGCTAAAAAGTGTAAAGTTCGATCTAGCAAAATAATTGAAATTCTTCTGATTGACAAAAAAAAATTAGGTTTTTTGAAGAACTTTGATTTTTGCATGATAGTATTTTATACATTTCGGATGTTCATCAATTTTTCGTAATTCTATTTTACACCGAGATGCCGTACCGCTCAAAGGTTATCCACTTTATCATAGTAGGACATAGCCGACTGTGGGTTCTCTAAAAGTATAATGTATTTTGACGAATAGGTCTGAAAAGTTAAAGGTTAAACAAAACATTGTGAAAGTTCAAACTTGAAGCTCTATATTTTAATTGGTGGGACCTAAATCTTTTCSGCCACCTTCTTACTTTAAATCGAGTAAGTTTCACGCACCCCCATTTTGTAGAAATTTCGTAGAAATTTTTTAGAAGAATCGTAACTAGGTCAATTCCGGTCCGTTTTGTCTGATTCTTTTTTTAATCGATAGAAAATCTCTATGACTATCCGGTTGCTAAAACTCGTCAGAATTGGTACTTTTACAGAGCCAGGGCCGAAGGCCCTGCATCTGATTCCACCTAATTGCGCGGCATAGCCGCGCCTAGCGGAGTCGGCCGTAGGCCGAGGACGCTAGTCCGGCATATGGGACAAAATATAATATATCCAATCAAATGTTTTTTGTTGATAATCTTTCAAAATAATTACGAAAAGTTTTGAAATGAAATGTATTGCGAAATTATCTAAATTCCATTTTGAATATTAGAATGTTTATCATTTGTAATCTATCCACTGAAACTCGCAAAACTCTTTAATCATTAAAAACCGAAAGAGTGTATGATACCTGTCTTCGAGGAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 237 194 54 7 7</canonical_bands>
                <polymorphic_bands>695 237 54 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>499 255 246</canonical_bands>
                <polymorphic_bands>754 246</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>237 201 188 168 95 37 35 19 7 7 6</canonical_bands>
                <polymorphic_bands>237 225 201 168 95 35 19 7 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGGTTAAACAAAACATTGTGA</pcr_primer_p1>
		<pcr_primer_p2>GCAATACATTTCATTTCAAAACT</pcr_primer_p2>
		<pcr_amplicon_size>449</pcr_amplicon_size>
		<canonical_amplicon>AAAGGTTAAACAAAACATTGTGAAAGTTCAAACTTGAAGCTCTATATTTTAATTGGTGGGACCTAAATCTTTTCGGCCACCTTCTTACTTTAAATCGAGTAAGTTTCACGCACCCCCATTTTGTAGAAATTTCGTAGAAATTTTTTAGAAGAATCGTAACTAGGTCAATTCCGGTCCGTTTTGTCTGATTCTTTTTTTAATCGATAGAAAATCTCTATGACTATCCGGTTGCTAAAACTCGTCAGAATTGGTACTTTTACAGAGCCAGGGCCGAAGGCCCTGCATCTGATTCCACCTAATTGCGCGGCATAGCCGCGCCTAGCGGAGTCGGCCGTAGGCCGAGGACGCTAGTCCGGCATATGGGACAAAATATAATATATCCAATCAAATGTTTTTTGTTGATAATCTTTCAAAATAATTACGAAAAGTTTTGAAATGAAATGTATTGC</canonical_amplicon>
		<polymorphic_amplicon>AAAGGTTAAACAAAACATTGTGAAAGTTCAAACTTGAAGCTCTATATTTTAATTGGTGGGACCTAAATCTTTTCSGCCACCTTCTTACTTTAAATCGAGTAAGTTTCACGCACCCCCATTTTGTAGAAATTTCGTAGAAATTTTTTAGAAGAATCGTAACTAGGTCAATTCCGGTCCGTTTTGTCTGATTCTTTTTTTAATCGATAGAAAATCTCTATGACTATCCGGTTGCTAAAACTCGTCAGAATTGGTACTTTTACAGAGCCAGGGCCGAAGGCCCTGCATCTGATTCCACCTAATTGCGCGGCATAGCCGCGCCTAGCGGAGTCGGCCGTAGGCCGAGGACGCTAGTCCGGCATATGGGACAAAATATAATATATCCAATCAAATGTTTTTTGTTGATAATCTTTCAAAATAATTACGAAAAGTTTTGAAATGAAATGTATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31599</snp_id>
        <super_contig>c006600988.Contig2</super_contig>
        <contig_pos>67043</contig_pos>
        <strand></strand>
        <context>aatctctatg[A/G]ctatccggtt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCGGTCCGTTTTGTCTGATTCTTTTTTTAATCGATAGAAAATCTCTATG</left_flank>
        <right_flank>CTATCCGGTTGCTAAAACTCGTCAGAATTGGTACTTTTACAGAGCCAGGG</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTGCATATGTATACAAAAGGCTAAAAAGTGTAAAGTTCGATCTAGCAAAATAATTGAAATTCTTCTGATTGACAAAAAAAAATTAGGTTTTTTGAAGAACTTTGATTTTTGCATGATAGTATTTTATACATTTCGGATGTTCATCAATTTTTCGTAATTCTATTTTACACCGAGATGCCGTACCGCTCAAAGGTTATCCACTTTATCATAGTAGGACATAGCCGACTGTGGGTTCTCTAAAAGTATAATGTATTTTGACGAATAGGTCTGAAAAGTTAAAGGTTAAACAAAACATTGTGAAAGTTCAAACTTGAAGCTCTATATTTTAATTGGTGGGACCTAAATCTTTTCGGCCACCTTCTTACTTTAAATCGAGTAAGTTTCACGCACCCCCATTTTGTAGAAATTTCGTAGAAATTTTTTAGAAGAATCGTAACTAGGTCAATTCCGGTCCGTTTTGTCTGATTCTTTTTTTAATCGATAGAAAATCTCTATGACTATCCGGTTGCTAAAACTCGTCAGAATTGGTACTTTTACAGAGCCAGGGCCGAAGGCCCTGCATCTGATTCCACCTAATTGCGCGGCATAGCCGCGCCTAGCGGAGTCGGCCGTAGGCCGAGGACGCTAGTCCGGCATATGGGACAAAATATAATATATCCAATCAAATGTTTTTTGTTGATAATCTTTCAAAATAATTACGAAAAGTTTTGAAATGAAATGTATTGCGAAATTATCTAAATTCCATTTTGAATATTAGAATGTTTATCATTTGTAATCTATCCACTGAAACTCGCAAAACTCTTTAATCATTAAAAACCGAAAGAGTGTATGATACCTGTCTTCGAGGAAAAACATTTGATATACTTTTACCCTTTCAGTGTTGTTGACTTAAGAGAATTTCGGTCACCTCTCGACGGGCGGTCTTTTTTTTCAATTCACATCTGAGAAGAAGAGGGCTTCCGTTTTCATTTTCACCTCCTCATTCAACATTTTCTCG</canonical>
            <polymorphic>TATTTGCATATGTATACAAAAGGCTAAAAAGTGTAAAGTTCGATCTAGCAAAATAATTGAAATTCTTCTGATTGACAAAAAAAAATTAGGTTTTTTGAAGAACTTTGATTTTTGCATGATAGTATTTTATACATTTCGGATGTTCATCAATTTTTCGTAATTCTATTTTACACCGAGATGCCGTACCGCTCAAAGGTTATCCACTTTATCATAGTAGGACATAGCCGACTGTGGGTTCTCTAAAAGTATAATGTATTTTGACGAATAGGTCTGAAAAGTTAAAGGTTAAACAAAACATTGTGAAAGTTCAAACTTGAAGCTCTATATTTTAATTGGTGGGACCTAAATCTTTTCGGCCACCTTCTTACTTTAAATCGAGTAAGTTTCACGCACCCCCATTTTGTAGAAATTTCGTAGAAATTTTTTAGAAGAATCGTAACTAGGTCAATTCCGGTCCGTTTTGTCTGATTCTTTTTTTAATCGATAGAAAATCTCTATGRCTATCCGGTTGCTAAAACTCGTCAGAATTGGTACTTTTACAGAGCCAGGGCCGAAGGCCCTGCATCTGATTCCACCTAATTGCGCGGCATAGCCGCGCCTAGCGGAGTCGGCCGTAGGCCGAGGACGCTAGTCCGGCATATGGGACAAAATATAATATATCCAATCAAATGTTTTTTGTTGATAATCTTTCAAAATAATTACGAAAAGTTTTGAAATGAAATGTATTGCGAAATTATCTAAATTCCATTTTGAATATTAGAATGTTTATCATTTGTAATCTATCCACTGAAACTCGCAAAACTCTTTAATCATTAAAAACCGAAAGAGTGTATGATACCTGTCTTCGAGGAAAAACATTTGATATACTTTTACCCTTTCAGTGTTGTTGACTTAAGAGAATTTCGGTCACCTCTCGACGGGCGGTCTTTTTTTTCAATTCACATCTGAGAAGAAGAGGGCTTCCGTTTTCATTTTCACCTCCTCATTCAACATTTTCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTCAAACTTGAAGCTCTATATT</pcr_primer_p1>
		<pcr_primer_p2>GCAATACATTTCATTTCAAAACT</pcr_primer_p2>
		<pcr_amplicon_size>426</pcr_amplicon_size>
		<canonical_amplicon>AAGTTCAAACTTGAAGCTCTATATTTTAATTGGTGGGACCTAAATCTTTTCGGCCACCTTCTTACTTTAAATCGAGTAAGTTTCACGCACCCCCATTTTGTAGAAATTTCGTAGAAATTTTTTAGAAGAATCGTAACTAGGTCAATTCCGGTCCGTTTTGTCTGATTCTTTTTTTAATCGATAGAAAATCTCTATGACTATCCGGTTGCTAAAACTCGTCAGAATTGGTACTTTTACAGAGCCAGGGCCGAAGGCCCTGCATCTGATTCCACCTAATTGCGCGGCATAGCCGCGCCTAGCGGAGTCGGCCGTAGGCCGAGGACGCTAGTCCGGCATATGGGACAAAATATAATATATCCAATCAAATGTTTTTTGTTGATAATCTTTCAAAATAATTACGAAAAGTTTTGAAATGAAATGTATTGC</canonical_amplicon>
		<polymorphic_amplicon>AAGTTCAAACTTGAAGCTCTATATTTTAATTGGTGGGACCTAAATCTTTTCGGCCACCTTCTTACTTTAAATCGAGTAAGTTTCACGCACCCCCATTTTGTAGAAATTTCGTAGAAATTTTTTAGAAGAATCGTAACTAGGTCAATTCCGGTCCGTTTTGTCTGATTCTTTTTTTAATCGATAGAAAATCTCTATGRCTATCCGGTTGCTAAAACTCGTCAGAATTGGTACTTTTACAGAGCCAGGGCCGAAGGCCCTGCATCTGATTCCACCTAATTGCGCGGCATAGCCGCGCCTAGCGGAGTCGGCCGTAGGCCGAGGACGCTAGTCCGGCATATGGGACAAAATATAATATATCCAATCAAATGTTTTTTGTTGATAATCTTTCAAAATAATTACGAAAAGTTTTGAAATGAAATGTATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31600</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>5659</contig_pos>
        <strand></strand>
        <context>aagttgatgg[C/T]taggAAGCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTAGATATCTCTTACAGTAACCAAGATGAATGGGGTCAAAGTTGATGG</left_flank>
        <right_flank>TAGGAAGCCAGGTGTCAAGAAAGAGCACAGAGAAGCTAAAGCGGCTGCTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATACTTCAAAAATTACTTAATGGATTAAAAAGTCAATGGGCGGAGCCAAAAGAAACAAAAAGAGATTAAAACTTGCCTCGTCATTGGAATAGGATTTTTTGAATAGAGTTTGGATTTCTGGACACCGACAGAAAAGGACAAAAATCAAGATTTTCGTTGTTACTTTTGCAGAAAAAAATTAATTGCGTCAGAGAGAACACTTCAGAATGGATCTTTGAAAAACGAGGGTGGTTGTAGATAAACGGGTCGCGTGCGGTCCGTATACGGTTCCTATTTCAACCGCGCGCGAACGCTGAGTGTCCGTAACGGATCCGTTCGCATTTTACCTGTGTAGATGAGTTTTCACCACTTCGAGCAAATTTACCTCGATTCTTGTAAAAGATATTATGAATGGTCAACTGAGAAAATGTTAAGCATAAAATGAGTAATATTTGATCAGTTGACAGTTTTTAGATATCTCTTACAGTAACCAAGATGAATGGGGTCAAAGTTGATGGCTAGGAAGCCAGGTGTCAAGAAAGAGCACAGAGAAGCTAAAGCGGCTGCTCGACTGTGTTCCCTTCAACGTTCTGTATCTCAAATCCTGAAAGAGATATCGAAAAGTAATCAACTAATAAAATCCTTATCATAAAATTAGTAACATTTTATCAGTTGACAACTTTTTAATATCCCTTACAGGAACCGAGATAAATTGAGCCAAAATCGACTACTTGGGAGCGCGCGCTCAAGACAGCTCAGGTAAACGATTCGGAATTAGATCTGAGTTCATTCGGAATTAGATCGAATAACTCGAAATTCGGAAGTAGATCTGGACTAGATCTGATACCAAAGTTGCCACGAGAAATGCGCCATCAATGACTCAGCTGCCGCGGATAAATTGTTTTGTTTTTTTTGTTGTCCTAAATTTTTTTCGTCAAGAAAATGGGTATTTCTCTCAACTTTTGCCTTTTTTTCGCTCAATTATTTAAACTATATTTTCTGGAACATATTTTAATGTG</canonical>
            <polymorphic>GGATACTTCAAAAATTACTTAATGGATTAAAAAGTCAATGGGCGGAGCCAAAAGAAACAAAAAGAGATTAAAACTTGCCTCGTCATTGGAATAGGATTTTTTGAATAGAGTTTGGATTTCTGGACACCGACAGAAAAGGACAAAAATCAAGATTTTCGTTGTTACTTTTGCAGAAAAAAATTAATTGCGTCAGAGAGAACACTTCAGAATGGATCTTTGAAAAACGAGGGTGGTTGTAGATAAACGGGTCGCGTGCGGTCCGTATACGGTTCCTATTTCAACCGCGCGCGAACGCTGAGTGTCCGTAACGGATCCGTTCGCATTTTACCTGTGTAGATGAGTTTTCACCACTTCGAGCAAATTTACCTCGATTCTTGTAAAAGATATTATGAATGGTCAACTGAGAAAATGTTAAGCATAAAATGAGTAATATTTGATCAGTTGACAGTTTTTAGATATCTCTTACAGTAACCAAGATGAATGGGGTCAAAGTTGATGGYTAGGAAGCCAGGTGTCAAGAAAGAGCACAGAGAAGCTAAAGCGGCTGCTCGACTGTGTTCCCTTCAACGTTCTGTATCTCAAATCCTGAAAGAGATATCGAAAAGTAATCAACTAATAAAATCCTTATCATAAAATTAGTAACATTTTATCAGTTGACAACTTTTTAATATCCCTTACAGGAACCGAGATAAATTGAGCCAAAATCGACTACTTGGGAGCGCGCGCTCAAGACAGCTCAGGTAAACGATTCGGAATTAGATCTGAGTTCATTCGGAATTAGATCGAATAACTCGAAATTCGGAAGTAGATCTGGACTAGATCTGATACCAAAGTTGCCACGAGAAATGCGCCATCAATGACTCAGCTGCCGCGGATAAATTGTTTTGTTTTTTTTGTTGTCCTAAATTTTTTTCGTCAAGAAAATGGGTATTTCTCTCAACTTTTGCCTTTTTTTCGCTCAATTATTTAAACTATATTTTCTGGAACATATTTTAATGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 316 184</canonical_bands>
                <polymorphic_bands>816 184</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>452 154 135 130 47 37 28 9 8</canonical_bands>
                <polymorphic_bands>460 154 135 130 47 37 28 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCATTTTACCTGTGTAGATGAGT</pcr_primer_p1>
		<pcr_primer_p2>ATCGTTTACCTGAGCTGTCTT</pcr_primer_p2>
		<pcr_amplicon_size>430</pcr_amplicon_size>
		<canonical_amplicon>GCATTTTACCTGTGTAGATGAGTTTTCACCACTTCGAGCAAATTTACCTCGATTCTTGTAAAAGATATTATGAATGGTCAACTGAGAAAATGTTAAGCATAAAATGAGTAATATTTGATCAGTTGACAGTTTTTAGATATCTCTTACAGTAACCAAGATGAATGGGGTCAAAGTTGATGGCTAGGAAGCCAGGTGTCAAGAAAGAGCACAGAGAAGCTAAAGCGGCTGCTCGACTGTGTTCCCTTCAACGTTCTGTATCTCAAATCCTGAAAGAGATATCGAAAAGTAATCAACTAATAAAATCCTTATCATAAAATTAGTAACATTTTATCAGTTGACAACTTTTTAATATCCCTTACAGGAACCGAGATAAATTGAGCCAAAATCGACTACTTGGGAGCGCGCGCTCAAGACAGCTCAGGTAAACGAT</canonical_amplicon>
		<polymorphic_amplicon>GCATTTTACCTGTGTAGATGAGTTTTCACCACTTCGAGCAAATTTACCTCGATTCTTGTAAAAGATATTATGAATGGTCAACTGAGAAAATGTTAAGCATAAAATGAGTAATATTTGATCAGTTGACAGTTTTTAGATATCTCTTACAGTAACCAAGATGAATGGGGTCAAAGTTGATGGYTAGGAAGCCAGGTGTCAAGAAAGAGCACAGAGAAGCTAAAGCGGCTGCTCGACTGTGTTCCCTTCAACGTTCTGTATCTCAAATCCTGAAAGAGATATCGAAAAGTAATCAACTAATAAAATCCTTATCATAAAATTAGTAACATTTTATCAGTTGACAACTTTTTAATATCCCTTACAGGAACCGAGATAAATTGAGCCAAAATCGACTACTTGGGAGCGCGCGCTCAAGACAGCTCAGGTAAACGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31601</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>8402</contig_pos>
        <strand>+</strand>
        <context>GGGTCATATA[A/G]GTAAAGGGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACTAAAATTTTTTGAAAGACCAGTAATTTTCGAAAAAGTGGGTCATATA</left_flank>
        <right_flank>GTAAAGGGTCACAAGTTGGGTTTTTGGAGTTCAGACTAATTGGATTTTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAGAATTCCGAATCGCTGGATCACCCAAAAACTAAGAATCACATGTCGAACCAAAAACAAGCCCATCTTCCTAAACCTAAACCCAGTTACACTAAAAGAAAAAAGAAGAAGAAGAAGAAGAAGAAGACGTTATAAGAAACTAGCTGAAGGAGAAAATGACGCCTCCTTATGTTATATAAATTGAATTTATAGTCGCTCGAGCAGTCATAAAAACCCAGAAAAGGGATGTGTTACAACAAATAAGAAACATTTTCATATTCCCAAAAATTTTTGTTTAACAAATTTCACGAAATTTGAAATAAAAGTTGCAAAATTTTTCAGGAAAATTGACTACTTGGAAATTTATTGGAACCATTAAAACTGGAATTTTAAATTGCTGAGCAATCTATATAGACTATATAGAAGTGGGTGTATAGGTTGCCGGAAGAAAAGATGACTAACTTTGAAAACTAAAATTTTTTGAAAGACCAGTAATTTTCGAAAAAGTGGGTCATATAGGTAAAGGGTCACAAGTTGGGTTTTTGGAGTTCAGACTAATTGGATTTTGGGAAAAATGGGAGGAGAGTAGGAGAACGTTTCTGAGAGTCTGGAGACTATAGTCTTCAGAAAGTTTGTGGGGGAGGGAACTTGAAAAAAAACAGGAAATTTTGAATTATGAGTTTTTGGGACATTATCGAGGTTGTCTAATGTTTTGGTTTCATAGAATTTTTCTGAATGCTTCGATTTTTAAACTTTCAGGTTATCGAGTTTCTAGAAATTTTGGATTTTCCGAACTTCAAGATCCTTAGATTCCGGAACTTCTGAAAGTCTAGATAGTTACACTTTAGACTTCTAATATTGCAGATTATTCAAAATCCGGTTTTTGAAATTTCAGTTTTTTTTTTCTGCAACCGTTACTTAAAAATCCAAACAATGACGTCACTTCCTCAATTTAGGTGGATCACTGGATCCCTAAAAGTCATATGTTTTGGGACCACCTCCTTCAGACACTAATTAAG</canonical>
            <polymorphic>CTCAGAATTCCGAATCGCTGGATCACCCAAAAACTAAGAATCACATGTCGAACCAAAAACAAGCCCATCTTCCTAAACCTAAACCCAGTTACACTAAAAGAAAAAAGAAGAAGAAGAAGAAGAAGAAGACGTTATAAGAAACTAGCTGAAGGAGAAAATGACGCCTCCTTATGTTATATAAATTGAATTTATAGTCGCTCGAGCAGTCATAAAAACCCAGAAAAGGGATGTGTTACAACAAATAAGAAACATTTTCATATTCCCAAAAATTTTTGTTTAACAAATTTCACGAAATTTGAAATAAAAGTTGCAAAATTTTTCAGGAAAATTGACTACTTGGAAATTTATTGGAACCATTAAAACTGGAATTTTAAATTGCTGAGCAATCTATATAGACTATATAGAAGTGGGTGTATAGGTTGCCGGAAGAAAAGATGACTAACTTTGAAAACTAAAATTTTTTGAAAGACCAGTAATTTTCGAAAAAGTGGGTCATATARGTAAAGGGTCACAAGTTGGGTTTTTGGAGTTCAGACTAATTGGATTTTGGGAAAAATGGGAGGAGAGTAGGAGAACGTTTCTGAGAGTCTGGAGACTATAGTCTTCAGAAAGTTTGTGGGGGAGGGAACTTGAAAAAAAACAGGAAATTTTGAATTATGAGTTTTTGGGACATTATCGAGGTTGTCTAATGTTTTGGTTTCATAGAATTTTTCTGAATGCTTCGATTTTTAAACTTTCAGGTTATCGAGTTTCTAGAAATTTTGGATTTTCCGAACTTCAAGATCCTTAGATTCCGGAACTTCTGAAAGTCTAGATAGTTACACTTTAGACTTCTAATATTGCAGATTATTCAAAATCCGGTTTTTGAAATTTCAGTTTTTTTTTTCTGCAACCGTTACTTAAAAATCCAAACAATGACGTCACTTCCTCAATTTAGGTGGATCACTGGATCCCTAAAAGTCATATGTTTTGGGACCACCTCCTTCAGACACTAATTAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTACTTGGAAATTTATTGGAACC</pcr_primer_p1>
		<pcr_primer_p2>AGAAACGTTCTCCTACTCTCCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTACTTGGAAATTTATTGGAACCATTAAAACTGGAATTTTAAATTGCTGAGCAATCTATATAGACTATATAGAAGTGGGTGTATAGGTTGCCGGAAGAAAAGATGACTAACTTTGAAAACTAAAATTTTTTGAAAGACCAGTAATTTTCGAAAAAGTGGGTCATATAGGTAAAGGGTCACAAGTTGGGTTTTTGGAGTTCAGACTAATTGGATTTTGGGAAAAATGGGAGGAGAGTAGGAGAACGTTTCT</canonical_amplicon>
		<polymorphic_amplicon>CTACTTGGAAATTTATTGGAACCATTAAAACTGGAATTTTAAATTGCTGAGCAATCTATATAGACTATATAGAAGTGGGTGTATAGGTTGCCGGAAGAAAAGATGACTAACTTTGAAAACTAAAATTTTTTGAAAGACCAGTAATTTTCGAAAAAGTGGGTCATATARGTAAAGGGTCACAAGTTGGGTTTTTGGAGTTCAGACTAATTGGATTTTGGGAAAAATGGGAGGAGAGTAGGAGAACGTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31602</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>24698</contig_pos>
        <strand>+</strand>
        <context>TTAAAGTTTA[A/G]ATATTCGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAACCAAAAAGTCATGAATTCCAAGAATCTTAGGAATCTTTAAAGTTTA</left_flank>
        <right_flank>ATATTCGAAAAACACAGAAATTCAGAAATTCTAAACATTTGGAAACTTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGCAACAAAAATCAGAAATAAAAGTCATCGTCACATTTGTTTTCTTAATTTTCAAATATTTTTCGTTTCTCGTTTTTACTGGAACCGTTCTGAGTCAAAAATCGAAATTCCACCTGTAAAAACAAAGAAAAGTAGCAAAATCATGGAAAATACGAGAAAATGAGTTACAAGAAACTGGATTAGTCAGCAATTAACTGAAGAAATTTCTAGAAAATTCTAGAAAATTCTGGAAGAAAAAAGGGGAAAAAAGAGAGGATTATGTTCTTTAAACGTTAAAAGATCAACCTTTTTTTTAGTTAAGCTTCCTGGAAAATGATTTCAAAATCATTTAAAAGATTTTAAGTGAGTTTAATTGAGTCTGTTAGTACTAGCAGCTACAGTAATCCTTAAAAATGAGCAATGAAACAACGAGAACTTTTGCGAGAACAGAAGCAATTCAGAGATTTGAAAAACCAAAAAGTCATGAATTCCAAGAATCTTAGGAATCTTTAAAGTTTAAATATTCGAAAAACACAGAAATTCAGAAATTCTAAACATTTGGAAACTTTGAATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTG</canonical>
            <polymorphic>TGGCAACAAAAATCAGAAATAAAAGTCATCGTCACATTTGTTTTCTTAATTTTCAAATATTTTTCGTTTCTCGTTTTTACTGGAACCGTTCTGAGTCAAAAATCGAAATTCCACCTGTAAAAACAAAGAAAAGTAGCAAAATCATGGAAAATACGAGAAAATGAGTTACAAGAAACTGGATTAGTCAGCAATTAACTGAAGAAATTTCTAGAAAATTCTAGAAAATTCTGGAAGAAAAAAGGGGAAAAAAGAGAGGATTATGTTCTTTAAACGTTAAAAGATCAACCTTTTTTTTAGTTAAGCTTCCTGGAAAATGATTTCAAAATCATTTAAAAGATTTTAAGTGAGTTTAATTGAGTCTGTTAGTACTAGCAGCTACAGTAATCCTTAAAAATGAGCAATGAAACAACGAGAACTTTTGCGAGAACAGAAGCAATTCAGAGATTTGAAAAACCAAAAAGTCATGAATTCCAAGAATCTTAGGAATCTTTAAAGTTTARATATTCGAAAAACACAGAAATTCAGAAATTCTAAACATTTGGAAACTTTGAATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 268 160 63 7</canonical_bands>
                <polymorphic_bands>509 268 160 63</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>252 217 146 102 75 46 38 34 32 24 10 10 7 7</canonical_bands>
                <polymorphic_bands>252 224 146 102 75 46 38 34 32 24 10 10 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>444 331 161 58 6</canonical_bands>
                <polymorphic_bands>775 161 58 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGAAACAACGAGAACTTTTG</pcr_primer_p1>
		<pcr_primer_p2>TGATTTTATTTTGCTTTTCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATGAAACAACGAGAACTTTTGCGAGAACAGAAGCAATTCAGAGATTTGAAAAACCAAAAAGTCATGAATTCCAAGAATCTTAGGAATCTTTAAAGTTTAAATATTCGAAAAACACAGAAATTCAGAAATTCTAAACATTTGGAAACTTTGAATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCA</canonical_amplicon>
		<polymorphic_amplicon>AATGAAACAACGAGAACTTTTGCGAGAACAGAAGCAATTCAGAGATTTGAAAAACCAAAAAGTCATGAATTCCAAGAATCTTAGGAATCTTTAAAGTTTARATATTCGAAAAACACAGAAATTCAGAAATTCTAAACATTTGGAAACTTTGAATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31603</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>24733</contig_pos>
        <strand>+</strand>
        <context>GAAATTCTAA[A/T]CATTTGGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATCTTTAAAGTTTAAATATTCGAAAAACACAGAAATTCAGAAATTCTAA</left_flank>
        <right_flank>CATTTGGAAACTTTGAATTCGACTGTGAAAATTGAGTTTTGCCGAAAATC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGTTTTCTTAATTTTCAAATATTTTTCGTTTCTCGTTTTTACTGGAACCGTTCTGAGTCAAAAATCGAAATTCCACCTGTAAAAACAAAGAAAAGTAGCAAAATCATGGAAAATACGAGAAAATGAGTTACAAGAAACTGGATTAGTCAGCAATTAACTGAAGAAATTTCTAGAAAATTCTAGAAAATTCTGGAAGAAAAAAGGGGAAAAAAGAGAGGATTATGTTCTTTAAACGTTAAAAGATCAACCTTTTTTTTAGTTAAGCTTCCTGGAAAATGATTTCAAAATCATTTAAAAGATTTTAAGTGAGTTTAATTGAGTCTGTTAGTACTAGCAGCTACAGTAATCCTTAAAAATGAGCAATGAAACAACGAGAACTTTTGCGAGAACAGAAGCAATTCAGAGATTTGAAAAACCAAAAAGTCATGAATTCCAAGAATCTTAGGAATCTTTAAAGTTTAAATATTCGAAAAACACAGAAATTCAGAAATTCTAAACATTTGGAAACTTTGAATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATG</canonical>
            <polymorphic>ATTTGTTTTCTTAATTTTCAAATATTTTTCGTTTCTCGTTTTTACTGGAACCGTTCTGAGTCAAAAATCGAAATTCCACCTGTAAAAACAAAGAAAAGTAGCAAAATCATGGAAAATACGAGAAAATGAGTTACAAGAAACTGGATTAGTCAGCAATTAACTGAAGAAATTTCTAGAAAATTCTAGAAAATTCTGGAAGAAAAAAGGGGAAAAAAGAGAGGATTATGTTCTTTAAACGTTAAAAGATCAACCTTTTTTTTAGTTAAGCTTCCTGGAAAATGATTTCAAAATCATTTAAAAGATTTTAAGTGAGTTTAATTGAGTCTGTTAGTACTAGCAGCTACAGTAATCCTTAAAAATGAGCAATGAAACAACGAGAACTTTTGCGAGAACAGAAGCAATTCAGAGATTTGAAAAACCAAAAAGTCATGAATTCCAAGAATCTTAGGAATCTTTAAAGTTTAAATATTCGAAAAACACAGAAATTCAGAAATTCTAAWCATTTGGAAACTTTGAATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAAACAACGAGAACTTTTG</pcr_primer_p1>
		<pcr_primer_p2>TGATTTTATTTTGCTTTTCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATGAAACAACGAGAACTTTTGCGAGAACAGAAGCAATTCAGAGATTTGAAAAACCAAAAAGTCATGAATTCCAAGAATCTTAGGAATCTTTAAAGTTTAAATATTCGAAAAACACAGAAATTCAGAAATTCTAAACATTTGGAAACTTTGAATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCA</canonical_amplicon>
		<polymorphic_amplicon>AATGAAACAACGAGAACTTTTGCGAGAACAGAAGCAATTCAGAGATTTGAAAAACCAAAAAGTCATGAATTCCAAGAATCTTAGGAATCTTTAAAGTTTAAATATTCGAAAAACACAGAAATTCAGAAATTCTAAWCATTTGGAAACTTTGAATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31604</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>24814</contig_pos>
        <strand>+</strand>
        <context>GAAGTTCTAG[A/T]AAATTTTATA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAG</left_flank>
        <right_flank>AAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAAAAACAAAGAAAAGTAGCAAAATCATGGAAAATACGAGAAAATGAGTTACAAGAAACTGGATTAGTCAGCAATTAACTGAAGAAATTTCTAGAAAATTCTAGAAAATTCTGGAAGAAAAAAGGGGAAAAAAGAGAGGATTATGTTCTTTAAACGTTAAAAGATCAACCTTTTTTTTAGTTAAGCTTCCTGGAAAATGATTTCAAAATCATTTAAAAGATTTTAAGTGAGTTTAATTGAGTCTGTTAGTACTAGCAGCTACAGTAATCCTTAAAAATGAGCAATGAAACAACGAGAACTTTTGCGAGAACAGAAGCAATTCAGAGATTTGAAAAACCAAAAAGTCATGAATTCCAAGAATCTTAGGAATCTTTAAAGTTTAAATATTCGAAAAACACAGAAATTCAGAAATTCTAAACATTTGGAAACTTTGAATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAAC</canonical>
            <polymorphic>GTAAAAACAAAGAAAAGTAGCAAAATCATGGAAAATACGAGAAAATGAGTTACAAGAAACTGGATTAGTCAGCAATTAACTGAAGAAATTTCTAGAAAATTCTAGAAAATTCTGGAAGAAAAAAGGGGAAAAAAGAGAGGATTATGTTCTTTAAACGTTAAAAGATCAACCTTTTTTTTAGTTAAGCTTCCTGGAAAATGATTTCAAAATCATTTAAAAGATTTTAAGTGAGTTTAATTGAGTCTGTTAGTACTAGCAGCTACAGTAATCCTTAAAAATGAGCAATGAAACAACGAGAACTTTTGCGAGAACAGAAGCAATTCAGAGATTTGAAAAACCAAAAAGTCATGAATTCCAAGAATCTTAGGAATCTTTAAAGTTTAAATATTCGAAAAACACAGAAATTCAGAAATTCTAAACATTTGGAAACTTTGAATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGWAAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCGACTGTGAAAATTGAGTT</pcr_primer_p1>
		<pcr_primer_p2>CTGTGCATTTTATTGTCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAG</canonical_amplicon>
		<polymorphic_amplicon>ATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGWAAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31605</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>24913</contig_pos>
        <strand>+</strand>
        <context>AGATTGAATT[A/T]AWTTATTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATT</left_flank>
        <right_flank>AATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTAGAAAATTCTGGAAGAAAAAAGGGGAAAAAAGAGAGGATTATGTTCTTTAAACGTTAAAAGATCAACCTTTTTTTTAGTTAAGCTTCCTGGAAAATGATTTCAAAATCATTTAAAAGATTTTAAGTGAGTTTAATTGAGTCTGTTAGTACTAGCAGCTACAGTAATCCTTAAAAATGAGCAATGAAACAACGAGAACTTTTGCGAGAACAGAAGCAATTCAGAGATTTGAAAAACCAAAAAGTCATGAATTCCAAGAATCTTAGGAATCTTTAAAGTTTAAATATTCGAAAAACACAGAAATTCAGAAATTCTAAACATTTGGAAACTTTGAATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAAT</canonical>
            <polymorphic>TTCTAGAAAATTCTGGAAGAAAAAAGGGGAAAAAAGAGAGGATTATGTTCTTTAAACGTTAAAAGATCAACCTTTTTTTTAGTTAAGCTTCCTGGAAAATGATTTCAAAATCATTTAAAAGATTTTAAGTGAGTTTAATTGAGTCTGTTAGTACTAGCAGCTACAGTAATCCTTAAAAATGAGCAATGAAACAACGAGAACTTTTGCGAGAACAGAAGCAATTCAGAGATTTGAAAAACCAAAAAGTCATGAATTCCAAGAATCTTAGGAATCTTTAAAGTTTAAATATTCGAAAAACACAGAAATTCAGAAATTCTAAACATTTGGAAACTTTGAATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTWAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>243 107 105 93 81 75 67 52 44 43 35 24 15 8 8</canonical_bands>
                <polymorphic_bands>243 137 107 105 81 75 67 52 43 35 24 15 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>252 217 211 102 52 38 38 32 24 10 10 7 7</canonical_bands>
                <polymorphic_bands>469 211 102 52 38 38 32 24 10 10 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCGACTGTGAAAATTGAGTT</pcr_primer_p1>
		<pcr_primer_p2>CTGTGCATTTTATTGTCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAG</canonical_amplicon>
		<polymorphic_amplicon>ATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTWAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31606</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>24915</contig_pos>
        <strand>+</strand>
        <context>ATTGAATTWA[A/T]TTATTTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTA</left_flank>
        <right_flank>TTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAGAAAATTCTGGAAGAAAAAAGGGGAAAAAAGAGAGGATTATGTTCTTTAAACGTTAAAAGATCAACCTTTTTTTTAGTTAAGCTTCCTGGAAAATGATTTCAAAATCATTTAAAAGATTTTAAGTGAGTTTAATTGAGTCTGTTAGTACTAGCAGCTACAGTAATCCTTAAAAATGAGCAATGAAACAACGAGAACTTTTGCGAGAACAGAAGCAATTCAGAGATTTGAAAAACCAAAAAGTCATGAATTCCAAGAATCTTAGGAATCTTTAAAGTTTAAATATTCGAAAAACACAGAAATTCAGAAATTCTAAACATTTGGAAACTTTGAATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCT</canonical>
            <polymorphic>CTAGAAAATTCTGGAAGAAAAAAGGGGAAAAAAGAGAGGATTATGTTCTTTAAACGTTAAAAGATCAACCTTTTTTTTAGTTAAGCTTCCTGGAAAATGATTTCAAAATCATTTAAAAGATTTTAAGTGAGTTTAATTGAGTCTGTTAGTACTAGCAGCTACAGTAATCCTTAAAAATGAGCAATGAAACAACGAGAACTTTTGCGAGAACAGAAGCAATTCAGAGATTTGAAAAACCAAAAAGTCATGAATTCCAAGAATCTTAGGAATCTTTAAAGTTTAAATATTCGAAAAACACAGAAATTCAGAAATTCTAAACATTTGGAAACTTTGAATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAWTTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>252 217 213 102 50 38 38 32 24 10 10 7 7</canonical_bands>
                <polymorphic_bands>469 213 102 50 38 38 32 24 10 10 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>128 105 99 93 83 75 59 53 52 43 39 32 26 24 22 15 14 11 8 8 6 5</canonical_bands>
                <polymorphic_bands>128 105 99 93 83 75 59 53 52 44 43 32 26 24 22 15 14 11 8 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCGACTGTGAAAATTGAGTT</pcr_primer_p1>
		<pcr_primer_p2>CTGTGCATTTTATTGTCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAG</canonical_amplicon>
		<polymorphic_amplicon>ATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAWTTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31607</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>24943</contig_pos>
        <strand>+</strand>
        <context>TTTTTACAAG[G/T]AAAAAAATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAG</left_flank>
        <right_flank>AAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAGAGAGGATTATGTTCTTTAAACGTTAAAAGATCAACCTTTTTTTTAGTTAAGCTTCCTGGAAAATGATTTCAAAATCATTTAAAAGATTTTAAGTGAGTTTAATTGAGTCTGTTAGTACTAGCAGCTACAGTAATCCTTAAAAATGAGCAATGAAACAACGAGAACTTTTGCGAGAACAGAAGCAATTCAGAGATTTGAAAAACCAAAAAGTCATGAATTCCAAGAATCTTAGGAATCTTTAAAGTTTAAATATTCGAAAAACACAGAAATTCAGAAATTCTAAACATTTGGAAACTTTGAATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAG</canonical>
            <polymorphic>AAAAAGAGAGGATTATGTTCTTTAAACGTTAAAAGATCAACCTTTTTTTTAGTTAAGCTTCCTGGAAAATGATTTCAAAATCATTTAAAAGATTTTAAGTGAGTTTAATTGAGTCTGTTAGTACTAGCAGCTACAGTAATCCTTAAAAATGAGCAATGAAACAACGAGAACTTTTGCGAGAACAGAAGCAATTCAGAGATTTGAAAAACCAAAAAGTCATGAATTCCAAGAATCTTAGGAATCTTTAAAGTTTAAATATTCGAAAAACACAGAAATTCAGAAATTCTAAACATTTGGAAACTTTGAATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGKAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTGAAAAGCAAAATAAAATCA</pcr_primer_p1>
		<pcr_primer_p2>TCTGAAAGAATTCAAAAAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGA</canonical_amplicon>
		<polymorphic_amplicon>CTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGKAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31608</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>24973</contig_pos>
        <strand></strand>
        <context>TTTTCAAAAA[T/G]AAAAATGACA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAA</left_flank>
        <right_flank>AAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGATCAACCTTTTTTTTAGTTAAGCTTCCTGGAAAATGATTTCAAAATCATTTAAAAGATTTTAAGTGAGTTTAATTGAGTCTGTTAGTACTAGCAGCTACAGTAATCCTTAAAAATGAGCAATGAAACAACGAGAACTTTTGCGAGAACAGAAGCAATTCAGAGATTTGAAAAACCAAAAAGTCATGAATTCCAAGAATCTTAGGAATCTTTAAAGTTTAAATATTCGAAAAACACAGAAATTCAGAAATTCTAAACATTTGGAAACTTTGAATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCA</canonical>
            <polymorphic>AAAAGATCAACCTTTTTTTTAGTTAAGCTTCCTGGAAAATGATTTCAAAATCATTTAAAAGATTTTAAGTGAGTTTAATTGAGTCTGTTAGTACTAGCAGCTACAGTAATCCTTAAAAATGAGCAATGAAACAACGAGAACTTTTGCGAGAACAGAAGCAATTCAGAGATTTGAAAAACCAAAAAGTCATGAATTCCAAGAATCTTAGGAATCTTTAAAGTTTAAATATTCGAAAAACACAGAAATTCAGAAATTCTAAACATTTGGAAACTTTGAATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAAKAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTGAAAAGCAAAATAAAATCA</pcr_primer_p1>
		<pcr_primer_p2>TCTGAAAGAATTCAAAAAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGA</canonical_amplicon>
		<polymorphic_amplicon>CTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAAKAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31609</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>25013</contig_pos>
        <strand>+</strand>
        <context>TTAGGAATGC[A/C]ACAAAMAAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGC</left_flank>
        <right_flank>ACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTCAAAATCATTTAAAAGATTTTAAGTGAGTTTAATTGAGTCTGTTAGTACTAGCAGCTACAGTAATCCTTAAAAATGAGCAATGAAACAACGAGAACTTTTGCGAGAACAGAAGCAATTCAGAGATTTGAAAAACCAAAAAGTCATGAATTCCAAGAATCTTAGGAATCTTTAAAGTTTAAATATTCGAAAAACACAGAAATTCAGAAATTCTAAACATTTGGAAACTTTGAATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGA</canonical>
            <polymorphic>GATTTCAAAATCATTTAAAAGATTTTAAGTGAGTTTAATTGAGTCTGTTAGTACTAGCAGCTACAGTAATCCTTAAAAATGAGCAATGAAACAACGAGAACTTTTGCGAGAACAGAAGCAATTCAGAGATTTGAAAAACCAAAAAGTCATGAATTCCAAGAATCTTAGGAATCTTTAAAGTTTAAATATTCGAAAAACACAGAAATTCAGAAATTCTAAACATTTGGAAACTTTGAATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCMACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>502 478 20</canonical_bands>
                <polymorphic_bands>522 478</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTGAAAAGCAAAATAAAATCA</pcr_primer_p1>
		<pcr_primer_p2>TCTGAAAGAATTCAAAAAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGA</canonical_amplicon>
		<polymorphic_amplicon>CTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCMACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31610</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>25019</contig_pos>
        <strand>+</strand>
        <context>ATGCMACAAA[A/C]AAGCATCCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAA</left_flank>
        <right_flank>AAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATCATTTAAAAGATTTTAAGTGAGTTTAATTGAGTCTGTTAGTACTAGCAGCTACAGTAATCCTTAAAAATGAGCAATGAAACAACGAGAACTTTTGCGAGAACAGAAGCAATTCAGAGATTTGAAAAACCAAAAAGTCATGAATTCCAAGAATCTTAGGAATCTTTAAAGTTTAAATATTCGAAAAACACAGAAATTCAGAAATTCTAAACATTTGGAAACTTTGAATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTA</canonical>
            <polymorphic>AAAATCATTTAAAAGATTTTAAGTGAGTTTAATTGAGTCTGTTAGTACTAGCAGCTACAGTAATCCTTAAAAATGAGCAATGAAACAACGAGAACTTTTGCGAGAACAGAAGCAATTCAGAGATTTGAAAAACCAAAAAGTCATGAATTCCAAGAATCTTAGGAATCTTTAAAGTTTAAATATTCGAAAAACACAGAAATTCAGAAATTCTAAACATTTGGAAACTTTGAATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAMAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGAGTTCCTCTTATTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>TGGGATCAAAATAATAACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCA</canonical_amplicon>
		<polymorphic_amplicon>GGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAMAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31611</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>25040</contig_pos>
        <strand>+</strand>
        <context>ATATTTTTTT[G/T]TGTTTTTGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTT</left_flank>
        <right_flank>TGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTGAGTTTAATTGAGTCTGTTAGTACTAGCAGCTACAGTAATCCTTAAAAATGAGCAATGAAACAACGAGAACTTTTGCGAGAACAGAAGCAATTCAGAGATTTGAAAAACCAAAAAGTCATGAATTCCAAGAATCTTAGGAATCTTTAAAGTTTAAATATTCGAAAAACACAGAAATTCAGAAATTCTAAACATTTGGAAACTTTGAATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAA</canonical>
            <polymorphic>AGTGAGTTTAATTGAGTCTGTTAGTACTAGCAGCTACAGTAATCCTTAAAAATGAGCAATGAAACAACGAGAACTTTTGCGAGAACAGAAGCAATTCAGAGATTTGAAAAACCAAAAAGTCATGAATTCCAAGAATCTTAGGAATCTTTAAAGTTTAAATATTCGAAAAACACAGAAATTCAGAAATTCTAAACATTTGGAAACTTTGAATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTKTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>385 233 168 76 49 48 37 4</canonical_bands>
                <polymorphic_bands>385 233 168 125 48 37 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGAGTTCCTCTTATTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>TGGGATCAAAATAATAACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCA</canonical_amplicon>
		<polymorphic_amplicon>GGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTKTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31612</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>25094</contig_pos>
        <strand>+</strand>
        <context>TTATTATGAT[A/C]GTTTTTGTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGAT</left_flank>
        <right_flank>GTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCAATGAAACAACGAGAACTTTTGCGAGAACAGAAGCAATTCAGAGATTTGAAAAACCAAAAAGTCATGAATTCCAAGAATCTTAGGAATCTTTAAAGTTTAAATATTCGAAAAACACAGAAATTCAGAAATTCTAAACATTTGGAAACTTTGAATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAA</canonical>
            <polymorphic>AGCAATGAAACAACGAGAACTTTTGCGAGAACAGAAGCAATTCAGAGATTTGAAAAACCAAAAAGTCATGAATTCCAAGAATCTTAGGAATCTTTAAAGTTTAAATATTCGAAAAACACAGAAATTCAGAAATTCTAAACATTTGGAAACTTTGAATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATMGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>454 337 146 42 21</canonical_bands>
                <polymorphic_bands>454 337 146 63</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGACAATAAAATGCACAG</pcr_primer_p1>
		<pcr_primer_p2>CATCAACCGTTAATAGCAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATMGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31613</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>25171</contig_pos>
        <strand>+</strand>
        <context>TCCTTAAACA[A/G]ATTTRTACGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACA</left_flank>
        <right_flank>ATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATCTTAGGAATCTTTAAAGTTTAAATATTCGAAAAACACAGAAATTCAGAAATTCTAAACATTTGGAAACTTTGAATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAA</canonical>
            <polymorphic>AGAATCTTAGGAATCTTTAAAGTTTAAATATTCGAAAAACACAGAAATTCAGAAATTCTAAACATTTGGAAACTTTGAATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACARATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCCTTTTTGAATTCTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>ACTCCCAATAGTAGAGGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGT</canonical_amplicon>
		<polymorphic_amplicon>GATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACARATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31614</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>25176</contig_pos>
        <strand>+</strand>
        <context>AAACARATTT[A/G]TACGATTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTT</left_flank>
        <right_flank>TACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCT</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTAGGAATCTTTAAAGTTTAAATATTCGAAAAACACAGAAATTCAGAAATTCTAAACATTTGGAAACTTTGAATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAG</canonical>
            <polymorphic>CTTAGGAATCTTTAAAGTTTAAATATTCGAAAAACACAGAAATTCAGAAATTCTAAACATTTGGAAACTTTGAATTCGACTGTGAAAATTGAGTTTTGCCGAAAATCTGTAAAAACTTAGAATAACTGAAGTTCTAGTAAATTTTATAACTCTGAAAAGCAAAATAAAATCATTTGCTCTCATCAAAAGTCTCTGGGGAGTTCCTCTTATTTTCAAAATGACTATCAGATTGAATTTAATTATTTTTTTCCAGATTTTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTRTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCCTTTTTGAATTCTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>ACTCCCAATAGTAGAGGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGT</canonical_amplicon>
		<polymorphic_amplicon>GATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTRTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31615</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>25432</contig_pos>
        <strand></strand>
        <context>tgacccaaaa[A/T]twgaaatcta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAA</left_flank>
        <right_flank>TAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATTCTTCTCTCCATTTCCCTCTTCCTTTATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAAT</canonical>
            <polymorphic>TTTTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAWTAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATTCTTCTCTCCATTTCCCTCTTCCTTTATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAACATCTTCTTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATCAGTTCTCCCTTCTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>550</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAWTAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31616</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>25434</contig_pos>
        <strand></strand>
        <context>acccaaaawt[A/T]gaaatctarg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAAT</left_flank>
        <right_flank>GAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATTCTTCTCTCCATTTCCCTCTTCCTTTATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAATCA</canonical>
            <polymorphic>TTTACAAGAAAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATWGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATTCTTCTCTCCATTTCCCTCTTCCTTTATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAACATCTTCTTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATCAGTTCTCCCTTCTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>550</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATWGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31617</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>25443</contig_pos>
        <strand></strand>
        <context>twgaaatcta[G/A]gtcatgaycc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTA</left_flank>
        <right_flank>GTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATTCTTCTCTCCATTTCCCTCTTCCTTTATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAATCAATCCACGTA</canonical>
            <polymorphic>AAAAAAATAAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTARGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATTCTTCTCTCCATTTCCCTCTTCCTTTATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAATCAATCCACGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>394 193 77 77 77 51 27 26 26 26 26</canonical_bands>
                <polymorphic_bands>394 193 77 77 77 52 51 27 26 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAACATCTTCTTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATCAGTTCTCCCTTCTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>550</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTARGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31618</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>25451</contig_pos>
        <strand></strand>
        <context>targtcatga[T/C]ccgaaaatag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGA</left_flank>
        <right_flank>CCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATTCTTCTCTCCATTTCCCTCTTCCTTTATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAATCAATCCACGTAGTTTTTTT</canonical>
            <polymorphic>AAATTCAGCAATTTTCAAAAATAAAAATGACAATAAAATGCACAGGGCGTCTTAGGAATGCAACAAAAAAGCATCCGAATATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGAYCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATTCTTCTCTCCATTTCCCTCTTCCTTTATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAATCAATCCACGTAGTTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>337 279 147 97 64 42 21 13</canonical_bands>
                <polymorphic_bands>616 147 97 64 42 21 13</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>384 190 143 114 76 51 42</canonical_bands>
                <polymorphic_bands>527 190 114 76 51 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAACATCTTCTTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATCAGTTCTCCCTTCTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>550</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGAYCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31619</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>25531</contig_pos>
        <strand></strand>
        <context>gtcatgaccc[G/A]aaaatagaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCC</left_flank>
        <right_flank>AAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGAC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATTCTTCTCTCCATTTCCCTCTTCCTTTATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAATCAATCCACGTAGTTTTTTTTTCTATAATTCAAGACGTTTTTTCTTCATTTTTTTCTCAAACGCTATTTTTCTCCTTTAAAGATCTTCCGTTTGTCCTAG</canonical>
            <polymorphic>ATTTTTTTGTGTTTTTGGATCCTTTTTGAATTCTTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCRAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATTCTTCTCTCCATTTCCCTCTTCCTTTATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAATCAATCCACGTAGTTTTTTTTTCTATAATTCAAGACGTTTTTTCTTCATTTTTTTCTCAAACGCTATTTTTCTCCTTTAAAGATCTTCCGTTTGTCCTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAACATCTTCTTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATCAGTTCTCCCTTCTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>550</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCRAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31620</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>25564</contig_pos>
        <strand></strand>
        <context>ccaaaaaaat[T/A]gaaatctagg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAAT</left_flank>
        <right_flank>GAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATTCTTCTCTCCATTTCCCTCTTCCTTTATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAATCAATCCACGTAGTTTTTTTTTCTATAATTCAAGACGTTTTTTCTTCATTTTTTTCTCAAACGCTATTTTTCTCCTTTAAAGATCTTCCGTTTGTCCTAGTTATCTCGTTTCCTCTTTGAGTTATCAAAAAAT</canonical>
            <polymorphic>TTTCAGAAGCTGCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATWGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATTCTTCTCTCCATTTCCCTCTTCCTTTATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAATCAATCCACGTAGTTTTTTTTTCTATAATTCAAGACGTTTTTTCTTCATTTTTTTCTCAAACGCTATTTTTCTCCTTTAAAGATCTTCCGTTTGTCCTAGTTATCTCGTTTCCTCTTTGAGTTATCAAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>217 107 105 103 79 77 75 59 53 43 26 24 17 15</canonical_bands>
                <polymorphic_bands>217 130 107 105 103 79 75 59 43 26 24 17 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAACATCTTCTTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATCAGTTCTCCCTTCTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>550</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATWGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31621</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>25575</contig_pos>
        <strand></strand>
        <context>gaaatctagg[A/T]catgacccaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGG</left_flank>
        <right_flank>CATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATTCTTCTCTCCATTTCCCTCTTCCTTTATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAATCAATCCACGTAGTTTTTTTTTCTATAATTCAAGACGTTTTTTCTTCATTTTTTTCTCAAACGCTATTTTTCTCCTTTAAAGATCTTCCGTTTGTCCTAGTTATCTCGTTTCCTCTTTGAGTTATCAAAAAATTGTCAACTAAA</canonical>
            <polymorphic>GCTGAGAATTATTATGATCGTTTTTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGWCATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATTCTTCTCTCCATTTCCCTCTTCCTTTATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAATCAATCCACGTAGTTTTTTTTTCTATAATTCAAGACGTTTTTTCTTCATTTTTTTCTCAAACGCTATTTTTCTCCTTTAAAGATCTTCCGTTTGTCCTAGTTATCTCGTTTCCTCTTTGAGTTATCAAAAAATTGTCAACTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAACATCTTCTTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATCAGTTCTCCCTTCTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>550</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGWCATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31622</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>25598</contig_pos>
        <strand></strand>
        <context>actgaaaact[T/A]ggayatgacc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACT</left_flank>
        <right_flank>GGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATTCTTCTCTCCATTTCCCTCTTCCTTTATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAATCAATCCACGTAGTTTTTTTTTCTATAATTCAAGACGTTTTTTCTTCATTTTTTTCTCAAACGCTATTTTTCTCCTTTAAAGATCTTCCGTTTGTCCTAGTTATCTCGTTTCCTCTTTGAGTTATCAAAAAATTGTCAACTAAAGAAATGTTGCTGACTCAAGGCAA</canonical>
            <polymorphic>TTGTTATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTWGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATTCTTCTCTCCATTTCCCTCTTCCTTTATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAATCAATCCACGTAGTTTTTTTTTCTATAATTCAAGACGTTTTTTCTTCATTTTTTTCTCAAACGCTATTTTTCTCCTTTAAAGATCTTCCGTTTGTCCTAGTTATCTCGTTTCCTCTTTGAGTTATCAAAAAATTGTCAACTAAAGAAATGTTGCTGACTCAAGGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAACATCTTCTTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATCAGTTCTCCCTTCTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>550</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTWGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31623</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>25602</contig_pos>
        <strand></strand>
        <context>aaaactwgga[T/C]atgacccaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGA</left_flank>
        <right_flank>ATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATTCTTCTCTCCATTTCCCTCTTCCTTTATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAATCAATCCACGTAGTTTTTTTTTCTATAATTCAAGACGTTTTTTCTTCATTTTTTTCTCAAACGCTATTTTTCTCCTTTAAAGATCTTCCGTTTGTCCTAGTTATCTCGTTTCCTCTTTGAGTTATCAAAAAATTGTCAACTAAAGAAATGTTGCTGACTCAAGGCAAAAAT</canonical>
            <polymorphic>TATTATTTTGATCCCACGCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGAYATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATTCTTCTCTCCATTTCCCTCTTCCTTTATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAATCAATCCACGTAGTTTTTTTTTCTATAATTCAAGACGTTTTTTCTTCATTTTTTTCTCAAACGCTATTTTTCTCCTTTAAAGATCTTCCGTTTGTCCTAGTTATCTCGTTTCCTCTTTGAGTTATCAAAAAATTGTCAACTAAAGAAATGTTGCTGACTCAAGGCAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAACATCTTCTTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATCAGTTCTCCCTTCTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>550</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGAYATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGAYATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31624</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>25619</contig_pos>
        <strand></strand>
        <context>caaaaactga[G/A]aacttggaca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGA</left_flank>
        <right_flank>AACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATTCTTCTCTCCATTTCCCTCTTCCTTTATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAATCAATCCACGTAGTTTTTTTTTCTATAATTCAAGACGTTTTTTCTTCATTTTTTTCTCAAACGCTATTTTTCTCCTTTAAAGATCTTCCGTTTGTCCTAGTTATCTCGTTTCCTCTTTGAGTTATCAAAAAATTGTCAACTAAAGAAATGTTGCTGACTCAAGGCAAAAATTTTAGTACTTAAAAGCG</canonical>
            <polymorphic>GCCAACGACCGCATCAATAGAAATTCTGGAGCTTCACGGGTTCCTTAAACAGATTTGTACGATTTTCCGGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGARAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATTCTTCTCTCCATTTCCCTCTTCCTTTATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAATCAATCCACGTAGTTTTTTTTTCTATAATTCAAGACGTTTTTTCTTCATTTTTTTCTCAAACGCTATTTTTCTCCTTTAAAGATCTTCCGTTTGTCCTAGTTATCTCGTTTCCTCTTTGAGTTATCAAAAAATTGTCAACTAAAGAAATGTTGCTGACTCAAGGCAAAAATTTTAGTACTTAAAAGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>226 226 174 135 96 84 59</canonical_bands>
                <polymorphic_bands>310 226 174 135 96 59</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAACATCTTCTTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATCAGTTCTCCCTTCTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>550</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGARAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31625</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>25687</contig_pos>
        <strand></strand>
        <context>gtcatgaccc[G/A]aaaatagaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCC</left_flank>
        <right_flank>AAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATTCTTCTCTCCATTTCCCTCTTCCTTTATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAATCAATCCACGTAGTTTTTTTTTCTATAATTCAAGACGTTTTTTCTTCATTTTTTTCTCAAACGCTATTTTTCTCCTTTAAAGATCTTCCGTTTGTCCTAGTTATCTCGTTTCCTCTTTGAGTTATCAAAAAATTGTCAACTAAAGAAATGTTGCTGACTCAAGGCAAAAATTTTAGTACTTAAAAGCGTTGAGATCTATTGTAAAACAACCAAGATACATTGACTCAAAGTCAAAAGAGACATTTTAGAAAAAATT</canonical>
            <polymorphic>GGAATATTTTGCTATTAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCRAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATTCTTCTCTCCATTTCCCTCTTCCTTTATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAATCAATCCACGTAGTTTTTTTTTCTATAATTCAAGACGTTTTTTCTTCATTTTTTTCTCAAACGCTATTTTTCTCCTTTAAAGATCTTCCGTTTGTCCTAGTTATCTCGTTTCCTCTTTGAGTTATCAAAAAATTGTCAACTAAAGAAATGTTGCTGACTCAAGGCAAAAATTTTAGTACTTAAAAGCGTTGAGATCTATTGTAAAACAACCAAGATACATTGACTCAAAGTCAAAAGAGACATTTTAGAAAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAACATCTTCTTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATCAGTTCTCCCTTCTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>550</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCRAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCRAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31626</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>25702</contig_pos>
        <strand></strand>
        <context>tagaaatcta[A/G]gtcatgaccc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTA</left_flank>
        <right_flank>GTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATTCTTCTCTCCATTTCCCTCTTCCTTTATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAATCAATCCACGTAGTTTTTTTTTCTATAATTCAAGACGTTTTTTCTTCATTTTTTTCTCAAACGCTATTTTTCTCCTTTAAAGATCTTCCGTTTGTCCTAGTTATCTCGTTTCCTCTTTGAGTTATCAAAAAATTGTCAACTAAAGAAATGTTGCTGACTCAAGGCAAAAATTTTAGTACTTAAAAGCGTTGAGATCTATTGTAAAACAACCAAGATACATTGACTCAAAGTCAAAAGAGACATTTTAGAAAAAATTCTGAAGAGCTTTTAT</canonical>
            <polymorphic>TAACGGTTGATGCTGAGAATGTCTGTCAATGCTATATTTTCGAAATTTTGAAAATCGGAATTTCAGCAATCCGGAAAAACCTCTACTATTGGGAGTTCTGGAATTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTARGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATTCTTCTCTCCATTTCCCTCTTCCTTTATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAATCAATCCACGTAGTTTTTTTTTCTATAATTCAAGACGTTTTTTCTTCATTTTTTTCTCAAACGCTATTTTTCTCCTTTAAAGATCTTCCGTTTGTCCTAGTTATCTCGTTTCCTCTTTGAGTTATCAAAAAATTGTCAACTAAAGAAATGTTGCTGACTCAAGGCAAAAATTTTAGTACTTAAAAGCGTTGAGATCTATTGTAAAACAACCAAGATACATTGACTCAAAGTCAAAAGAGACATTTTAGAAAAAATTCTGAAGAGCTTTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>309 226 174 135 84 59 13</canonical_bands>
                <polymorphic_bands>309 226 219 174 59 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAACATCTTCTTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATCAGTTCTCCCTTCTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>550</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAACATCTTCTTCATTTTATGGAAATCTAGGGCATTACCCAGAAATAAAAATCAGGTTCATGGCCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTARGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31627</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>25873</contig_pos>
        <strand>+</strand>
        <context>CCATTTCCCT[C/T]TTCCTTTATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTCTCTGGGTCTCAGAGAAGGGAGAACTGATTCTTCTCTCCATTTCCCT</left_flank>
        <right_flank>TTCCTTTATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATTCTTCTCTCCATTTCCCTCTTCCTTTATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAATCAATCCACGTAGTTTTTTTTTCTATAATTCAAGACGTTTTTTCTTCATTTTTTTCTCAAACGCTATTTTTCTCCTTTAAAGATCTTCCGTTTGTCCTAGTTATCTCGTTTCCTCTTTGAGTTATCAAAAAATTGTCAACTAAAGAAATGTTGCTGACTCAAGGCAAAAATTTTAGTACTTAAAAGCGTTGAGATCTATTGTAAAACAACCAAGATACATTGACTCAAAGTCAAAAGAGACATTTTAGAAAAAATTCTGAAGAGCTTTTATATTACAACAAAGTTAATTACACCAATTTCAAGAACAAGGAAAATTTAATTGATTTTGAGTACTTCTTCAAGGGTTGCCCTAACTTCGCCATACAAAACTCCCAAATCCGCTTTGTATGGACGAAGGAAGTCGGATGCTTCTGTTGCTACATCTTTGGATTCGTCCACACCG</canonical>
            <polymorphic>CCCAAAATTTGAAACCTAAGTCATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATTCTTCTCTCCATTTCCCTYTTCCTTTATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAATCAATCCACGTAGTTTTTTTTTCTATAATTCAAGACGTTTTTTCTTCATTTTTTTCTCAAACGCTATTTTTCTCCTTTAAAGATCTTCCGTTTGTCCTAGTTATCTCGTTTCCTCTTTGAGTTATCAAAAAATTGTCAACTAAAGAAATGTTGCTGACTCAAGGCAAAAATTTTAGTACTTAAAAGCGTTGAGATCTATTGTAAAACAACCAAGATACATTGACTCAAAGTCAAAAGAGACATTTTAGAAAAAATTCTGAAGAGCTTTTATATTACAACAAAGTTAATTACACCAATTTCAAGAACAAGGAAAATTTAATTGATTTTGAGTACTTCTTCAAGGGTTGCCCTAACTTCGCCATACAAAACTCCCAAATCCGCTTTGTATGGACGAAGGAAGTCGGATGCTTCTGTTGCTACATCTTTGGATTCGTCCACACCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAACATCTTCTTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTGATTTTGAAACCTATGACC</pcr_primer_p2>
		<pcr_amplicon_size>631</pcr_amplicon_size>
		<canonical_amplicon>TCTTCCTTTATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAATCAAT</canonical_amplicon>
		<polymorphic_amplicon>TYTTCCTTTATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAATCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31628</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>25945</contig_pos>
        <strand>+</strand>
        <context>ATCCACGTAG[G/T]TTTTTTTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAATCAATCCACGTAG</left_flank>
        <right_flank>TTTTTTTTCTATAATTCAAGACGTTTTTTCTTCATTTTTTTCTCAAACGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATTCTTCTCTCCATTTCCCTCTTCCTTTATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAATCAATCCACGTAGTTTTTTTTTCTATAATTCAAGACGTTTTTTCTTCATTTTTTTCTCAAACGCTATTTTTCTCCTTTAAAGATCTTCCGTTTGTCCTAGTTATCTCGTTTCCTCTTTGAGTTATCAAAAAATTGTCAACTAAAGAAATGTTGCTGACTCAAGGCAAAAATTTTAGTACTTAAAAGCGTTGAGATCTATTGTAAAACAACCAAGATACATTGACTCAAAGTCAAAAGAGACATTTTAGAAAAAATTCTGAAGAGCTTTTATATTACAACAAAGTTAATTACACCAATTTCAAGAACAAGGAAAATTTAATTGATTTTGAGTACTTCTTCAAGGGTTGCCCTAACTTCGCCATACAAAACTCCCAAATCCGCTTTGTATGGACGAAGGAAGTCGGATGCTTCTGTTGCTACATCTTTGGATTCGTCCACACCGTGATCAACAATTTCTCTAGCAATCACTTTGACATTCGAAAGTTTGTCTTTTCCAGGTTCAAGTCCTGAAAAA</canonical>
            <polymorphic>CATGATCCGAAAATAGAAATCTAGGTCATGACCCAAAAAATTAAAACTTGGATATGACCCAAAATTGAAATCTAGGTCATGACCCGAAAATAGAAATCTAGGTCATGACCAAAAAAATTGAAATCTAGGACATGACCCAAAAACTGAAAACTTGGATATGACCCAAAAACTGAGAACTTGGACATGACCCAAAATTGAAATCTAGGTCATGACCCAAAAATAGAAATCTAGGTCATGACCCGAAAATAGAAATCTAAGTCATGACCCGAAAATAGAAAACTGGATCACGACCCAAAATTGAAATCTAGGTCATGACCCAGAAATAGAGACCTGGGTTATGACCCAGGATCCAGGACCCGGATCCCTTCTCCGGCTCCCCTCTCTGGGTCTCAGAGAAGGGAGAACTGATTCTTCTCTCCATTTCCCTCTTCCTTTATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAATCAATCCACGTAGKTTTTTTTTCTATAATTCAAGACGTTTTTTCTTCATTTTTTTCTCAAACGCTATTTTTCTCCTTTAAAGATCTTCCGTTTGTCCTAGTTATCTCGTTTCCTCTTTGAGTTATCAAAAAATTGTCAACTAAAGAAATGTTGCTGACTCAAGGCAAAAATTTTAGTACTTAAAAGCGTTGAGATCTATTGTAAAACAACCAAGATACATTGACTCAAAGTCAAAAGAGACATTTTAGAAAAAATTCTGAAGAGCTTTTATATTACAACAAAGTTAATTACACCAATTTCAAGAACAAGGAAAATTTAATTGATTTTGAGTACTTCTTCAAGGGTTGCCCTAACTTCGCCATACAAAACTCCCAAATCCGCTTTGTATGGACGAAGGAAGTCGGATGCTTCTGTTGCTACATCTTTGGATTCGTCCACACCGTGATCAACAATTTCTCTAGCAATCACTTTGACATTCGAAAGTTTGTCTTTTCCAGGTTCAAGTCCTGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATAGTAACCTTCCTGAGGTCAA</pcr_primer_p1>
		<pcr_primer_p2>TTGTTGTAATATAAAAGCTCTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>333</pcr_amplicon_size>
		<canonical_amplicon>TATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAATCAATCCACGTAGTTTTTTTTTCTATAATTCAAGACGTTTTTTCTTCATTTTTTTCTCAAACGCTATTTTTCTCCTTTAAAGATCTTCCGTTTGTCCTAGTTATCTCGTTTCCTCTTTGAGTTATCAAAAAATTGTCAACTAAAGAAATGTTGCTGACTCAAGGCAAAAATTTTAGTACTTAAAAGCGTTGAGATCTATTGTAAAACAACCAAGATACATTGACTCAAAGTCAAAAGAGACATTTTAGAAAAAATTCTGAAGAGCTTTTATATTACAACAA</canonical_amplicon>
		<polymorphic_amplicon>TATAGTAACCTTCCTGAGGTCAATGGGCCATCGAGGGTCATAGGTTTCAAAATCAATCCACGTAGKTTTTTTTTCTATAATTCAAGACGTTTTTTCTTCATTTTTTTCTCAAACGCTATTTTTCTCCTTTAAAGATCTTCCGTTTGTCCTAGTTATCTCGTTTCCTCTTTGAGTTATCAAAAAATTGTCAACTAAAGAAATGTTGCTGACTCAAGGCAAAAATTTTAGTACTTAAAAGCGTTGAGATCTATTGTAAAACAACCAAGATACATTGACTCAAAGTCAAAAGAGACATTTTAGAAAAAATTCTGAAGAGCTTTTATATTACAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31629</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>29661</contig_pos>
        <strand></strand>
        <context>ATTCGAGAGA[T/C]TTATCGCATG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGGGGAAAAAAGAAAAGAGTTGCTATTTTGGAGTGTGTCCATTCGAGAGA</left_flank>
        <right_flank>TTATCGCATGACAAGGAGCTCTTTTTTGGAGCCAACTGAGACATTTTTGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTTATGGGCAAATTGTTAAAGGTGCCGCGCCGTTACAGGCTGAGCTAGGCATTATGCCCCCTCACTGTCCCATCCCCCTGAAATTGGACCATTCCTCTTCTTCTTTTCCTTCCCTTCTTCCTCTTTGCTCCAACTATACAAAAAAATAGACAATAGGGATCATCTCATCATTTTCGTATTCAATTGTTTACGCACAACAAGGAGCACAGACAGATAAAAGGCAGCAGCACATACGTTCTCCTTCCTCGACTCCTTTTTCATCTCCATTTCCTTTTTCTCTGCGTCTCCTCGTAATACACACTGCTTCTCTCTAAAAAATTCAGAACTGAAAAATTCGTTGTTTTCCATTTTTCACCTAGTTCCATTTTTGTTCCCCATCCTCCTCTATTTTGTGGTAATTTTGAGAGAAGGAAGGGAAAAAATGGGAAAATCGAGTGCAAACATTTTTGGGGAAAAAAGAAAAGAGTTGCTATTTTGGAGTGTGTCCATTCGAGAGATTTATCGCATGACAAGGAGCTCTTTTTTGGAGCCAACTGAGACATTTTTGTTTCGTTTTGGAAGTTCTAGGAAGTTAGATTTCGGAATTTTAGTAAAACTCAAAATAAGGAAATTCAAAAAGTTCAAGAAAATCTAAAATTCGAAGTTCTTCAAACTAAGATTTTAATCTCAGAATTTGAGTTTCTGAAATCGAAGTTTTGAAGTTATAGAATTTTTCTGAATTTCGAATGAAAAATTCAAAAAAAATCACCATTTTGAACCGATATTTATATGTTTTAGAAACGGAAAATTTTAGGAATTTTCGAATTTCAAAAATTATTGAAATTCGAAAAAATCATAGTTTACAAAATTTTGAGATTTCGAAGAAATTTGAATTTCAAATTTTGGAATTCTGAAGTACTCGAATTTCTTTTATTTTTGAATTTTGAAATTCTGAAACTTAGAAATTCTGAAATTCGGAAATTCTGATTCTCAAAATCTGAACTTCCCAGATTTTGTGA</canonical>
            <polymorphic>AACTTATGGGCAAATTGTTAAAGGTGCCGCGCCGTTACAGGCTGAGCTAGGCATTATGCCCCCTCACTGTCCCATCCCCCTGAAATTGGACCATTCCTCTTCTTCTTTTCCTTCCCTTCTTCCTCTTTGCTCCAACTATACAAAAAAATAGACAATAGGGATCATCTCATCATTTTCGTATTCAATTGTTTACGCACAACAAGGAGCACAGACAGATAAAAGGCAGCAGCACATACGTTCTCCTTCCTCGACTCCTTTTTCATCTCCATTTCCTTTTTCTCTGCGTCTCCTCGTAATACACACTGCTTCTCTCTAAAAAATTCAGAACTGAAAAATTCGTTGTTTTCCATTTTTCACCTAGTTCCATTTTTGTTCCCCATCCTCCTCTATTTTGTGGTAATTTTGAGAGAAGGAAGGGAAAAAATGGGAAAATCGAGTGCAAACATTTTTGGGGAAAAAAGAAAAGAGTTGCTATTTTGGAGTGTGTCCATTCGAGAGAYTTATCGCATGACAAGGAGCTCTTTTTTGGAGCCAACTGAGACATTTTTGTTTCGTTTTGGAAGTTCTAGGAAGTTAGATTTCGGAATTTTAGTAAAACTCAAAATAAGGAAATTCAAAAAGTTCAAGAAAATCTAAAATTCGAAGTTCTTCAAACTAAGATTTTAATCTCAGAATTTGAGTTTCTGAAATCGAAGTTTTGAAGTTATAGAATTTTTCTGAATTTCGAATGAAAAATTCAAAAAAAATCACCATTTTGAACCGATATTTATATGTTTTAGAAACGGAAAATTTTAGGAATTTTCGAATTTCAAAAATTATTGAAATTCGAAAAAATCATAGTTTACAAAATTTTGAGATTTCGAAGAAATTTGAATTTCAAATTTTGGAATTCTGAAGTACTCGAATTTCTTTTATTTTTGAATTTTGAAATTCTGAAACTTAGAAATTCTGAAATTCGGAAATTCTGATTCTCAAAATCTGAACTTCCCAGATTTTGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCTCCTCTATTTTGTGGTAAT</pcr_primer_p1>
		<pcr_primer_p2>CTTGAACTTTTTGAATTTCCTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCCTCCTCTATTTTGTGGTAATTTTGAGAGAAGGAAGGGAAAAAATGGGAAAATCGAGTGCAAACATTTTTGGGGAAAAAAGAAAAGAGTTGCTATTTTGGAGTGTGTCCATTCGAGAGATTTATCGCATGACAAGGAGCTCTTTTTTGGAGCCAACTGAGACATTTTTGTTTCGTTTTGGAAGTTCTAGGAAGTTAGATTTCGGAATTTTAGTAAAACTCAAAATAAGGAAATTCAAAAAGTTCAAG</canonical_amplicon>
		<polymorphic_amplicon>ATCCTCCTCTATTTTGTGGTAATTTTGAGAGAAGGAAGGGAAAAAATGGGAAAATCGAGTGCAAACATTTTTGGGGAAAAAAGAAAAGAGTTGCTATTTTGGAGTGTGTCCATTCGAGAGAYTTATCGCATGACAAGGAGCTCTTTTTTGGAGCCAACTGAGACATTTTTGTTTCGTTTTGGAAGTTCTAGGAAGTTAGATTTCGGAATTTTAGTAAAACTCAAAATAAGGAAATTCAAAAAGTTCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31632</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>40271</contig_pos>
        <strand>+</strand>
        <context>AAAGGTTTCA[A/G]TCATAATAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATGAATGTTTGGGAATAAGGAATTTTCTAAGGAATAGAAAGGTTTCA</left_flank>
        <right_flank>TCATAATAGAATCGAAGGATTTAAGAATCCAACAACCCAAATAGCTAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAGTTGTCAACTACAAAAATAAAGCCCAATTTTTGATTAGTATTCTCTGACATTTTCAGACAAATTGGAAAATTCCGAACCACTTTTTTCAGGACTCCAAAGTTGACTATTTTGGACACGAAATTTCGGTATTTTGAACTTTCCAGAATAGGTTATATTTTTTCAAAGCTCTGAATTCCAATTTTTCGAAAATGTTTTTCAAAATCTGAAAATCGCTAAATTTATTTTTTTTTCAGTGTAAACGTCGGGTGCGGTCCGGCCGAGGAGCGTGTCCTTCTGACCGGTCTTCATGCGGTCGCCGACATTTATTGTGAGATCTGCAAAACGACATTGGGATGGAAATATGTGAGTAGTATAAAGAACAGTTGAATAGGAGGGAGTGTGATGAGGGACAAATGGAGGTCAAGGGGGTGATAAATTTTTTGAAAATGGAAATTTTGGCGCCAAAATGAATGTTTGGGAATAAGGAATTTTCTAAGGAATAGAAAGGTTTCAATCATAATAGAATCGAAGGATTTAAGAATCCAACAACCCAAATAGCTAATTGTAAGGAAACAGAATCTAAAAACCAACAATCTAAGATTTCAAGATTTCAAGGATCCGAGATTCCAAAAATTCGAGCATTCAGAACTCCAAAAAATTTTAAAAAATCCAAAAAAAACCAAGGAATTCTGAAAACTCTAAAAGTTTGTAAAAATCCAAAAAACCAAAAATTCCAATGAATGTCAATTTTTCGGAGTTCTGGTGAACTCAAAAAAATTCAGAAATTCCGAAGAAGTTCTAGAAAATTCAAAATTTTAAATAAATCTTAAAAACTCCAAATATCCTATAAATGTAATTCCTGTAATTTCAAAAAACACAAAAATTCAAAAAATTCGAAAACCCTAATTCTCTATTCTATATTTTCGGGTCCATACACTTTTAAATTTCCGATTTTTTGTTAAATTCCAAAAGTCCACCCATCTGACCCAATGTCTAGTACCACATAGCACCATA</canonical>
            <polymorphic>AAAAAAGTTGTCAACTACAAAAATAAAGCCCAATTTTTGATTAGTATTCTCTGACATTTTCAGACAAATTGGAAAATTCCGAACCACTTTTTTCAGGACTCCAAAGTTGACTATTTTGGACACGAAATTTCGGTATTTTGAACTTTCCAGAATAGGTTATATTTTTTCAAAGCTCTGAATTCCAATTTTTCGAAAATGTTTTTCAAAATCTGAAAATCGCTAAATTTATTTTTTTTTCAGTGTAAACGTCGGGTGCGGTCCGGCCGAGGAGCGTGTCCTTCTGACCGGTCTTCATGCGGTCGCCGACATTTATTGTGAGATCTGCAAAACGACATTGGGATGGAAATATGTGAGTAGTATAAAGAACAGTTGAATAGGAGGGAGTGTGATGAGGGACAAATGGAGGTCAAGGGGGTGATAAATTTTTTGAAAATGGAAATTTTGGCGCCAAAATGAATGTTTGGGAATAAGGAATTTTCTAAGGAATAGAAAGGTTTCARTCATAATAGAATCGAAGGATTTAAGAATCCAACAACCCAAATAGCTAATTGTAAGGAAACAGAATCTAAAAACCAACAATCTAAGATTTCAAGATTTCAAGGATCCGAGATTCCAAAAATTCGAGCATTCAGAACTCCAAAAAATTTTAAAAAATCCAAAAAAAACCAAGGAATTCTGAAAACTCTAAAAGTTTGTAAAAATCCAAAAAACCAAAAATTCCAATGAATGTCAATTTTTCGGAGTTCTGGTGAACTCAAAAAAATTCAGAAATTCCGAAGAAGTTCTAGAAAATTCAAAATTTTAAATAAATCTTAAAAACTCCAAATATCCTATAAATGTAATTCCTGTAATTTCAAAAAACACAAAAATTCAAAAAATTCGAAAACCCTAATTCTCTATTCTATATTTTCGGGTCCATACACTTTTAAATTTCCGATTTTTTGTTAAATTCCAAAAGTCCACCCATCTGACCCAATGTCTAGTACCACATAGCACCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGATGGAAATATGTGAGTAGTA</pcr_primer_p1>
		<pcr_primer_p2>TGTTGGTTTTTAGATTCTGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GGGATGGAAATATGTGAGTAGTATAAAGAACAGTTGAATAGGAGGGAGTGTGATGAGGGACAAATGGAGGTCAAGGGGGTGATAAATTTTTTGAAAATGGAAATTTTGGCGCCAAAATGAATGTTTGGGAATAAGGAATTTTCTAAGGAATAGAAAGGTTTCAATCATAATAGAATCGAAGGATTTAAGAATCCAACAACCCAAATAGCTAATTGTAAGGAAACAGAATCTAAAAACCAACA</canonical_amplicon>
		<polymorphic_amplicon>GGGATGGAAATATGTGAGTAGTATAAAGAACAGTTGAATAGGAGGGAGTGTGATGAGGGACAAATGGAGGTCAAGGGGGTGATAAATTTTTTGAAAATGGAAATTTTGGCGCCAAAATGAATGTTTGGGAATAAGGAATTTTCTAAGGAATAGAAAGGTTTCARTCATAATAGAATCGAAGGATTTAAGAATCCAACAACCCAAATAGCTAATTGTAAGGAAACAGAATCTAAAAACCAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31633</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>40354</contig_pos>
        <strand>+</strand>
        <context>CCAACAATCT[C/T]AGATTTCAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAACCCAAATAGCTAATTGTAAGGAAACAGAATCTAAAAACCAACAATCT</left_flank>
        <right_flank>AGATTTCAAGATTTCAAGGATCCGAGATTCCAAAAATTCGAGCATTCAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACTTTTTTCAGGACTCCAAAGTTGACTATTTTGGACACGAAATTTCGGTATTTTGAACTTTCCAGAATAGGTTATATTTTTTCAAAGCTCTGAATTCCAATTTTTCGAAAATGTTTTTCAAAATCTGAAAATCGCTAAATTTATTTTTTTTTCAGTGTAAACGTCGGGTGCGGTCCGGCCGAGGAGCGTGTCCTTCTGACCGGTCTTCATGCGGTCGCCGACATTTATTGTGAGATCTGCAAAACGACATTGGGATGGAAATATGTGAGTAGTATAAAGAACAGTTGAATAGGAGGGAGTGTGATGAGGGACAAATGGAGGTCAAGGGGGTGATAAATTTTTTGAAAATGGAAATTTTGGCGCCAAAATGAATGTTTGGGAATAAGGAATTTTCTAAGGAATAGAAAGGTTTCAATCATAATAGAATCGAAGGATTTAAGAATCCAACAACCCAAATAGCTAATTGTAAGGAAACAGAATCTAAAAACCAACAATCTAAGATTTCAAGATTTCAAGGATCCGAGATTCCAAAAATTCGAGCATTCAGAACTCCAAAAAATTTTAAAAAATCCAAAAAAAACCAAGGAATTCTGAAAACTCTAAAAGTTTGTAAAAATCCAAAAAACCAAAAATTCCAATGAATGTCAATTTTTCGGAGTTCTGGTGAACTCAAAAAAATTCAGAAATTCCGAAGAAGTTCTAGAAAATTCAAAATTTTAAATAAATCTTAAAAACTCCAAATATCCTATAAATGTAATTCCTGTAATTTCAAAAAACACAAAAATTCAAAAAATTCGAAAACCCTAATTCTCTATTCTATATTTTCGGGTCCATACACTTTTAAATTTCCGATTTTTTGTTAAATTCCAAAAGTCCACCCATCTGACCCAATGTCTAGTACCACATAGCACCATACAACAGATGTTCTTTTTTTCAAATTTCTCCTTTTTTCAGGAACATGCATTTGAATCTTCGCAAAAGTACAAAGAGGGCAAATT</canonical>
            <polymorphic>CCACTTTTTTCAGGACTCCAAAGTTGACTATTTTGGACACGAAATTTCGGTATTTTGAACTTTCCAGAATAGGTTATATTTTTTCAAAGCTCTGAATTCCAATTTTTCGAAAATGTTTTTCAAAATCTGAAAATCGCTAAATTTATTTTTTTTTCAGTGTAAACGTCGGGTGCGGTCCGGCCGAGGAGCGTGTCCTTCTGACCGGTCTTCATGCGGTCGCCGACATTTATTGTGAGATCTGCAAAACGACATTGGGATGGAAATATGTGAGTAGTATAAAGAACAGTTGAATAGGAGGGAGTGTGATGAGGGACAAATGGAGGTCAAGGGGGTGATAAATTTTTTGAAAATGGAAATTTTGGCGCCAAAATGAATGTTTGGGAATAAGGAATTTTCTAAGGAATAGAAAGGTTTCAATCATAATAGAATCGAAGGATTTAAGAATCCAACAACCCAAATAGCTAATTGTAAGGAAACAGAATCTAAAAACCAACAATCTYAGATTTCAAGATTTCAAGGATCCGAGATTCCAAAAATTCGAGCATTCAGAACTCCAAAAAATTTTAAAAAATCCAAAAAAAACCAAGGAATTCTGAAAACTCTAAAAGTTTGTAAAAATCCAAAAAACCAAAAATTCCAATGAATGTCAATTTTTCGGAGTTCTGGTGAACTCAAAAAAATTCAGAAATTCCGAAGAAGTTCTAGAAAATTCAAAATTTTAAATAAATCTTAAAAACTCCAAATATCCTATAAATGTAATTCCTGTAATTTCAAAAAACACAAAAATTCAAAAAATTCGAAAACCCTAATTCTCTATTCTATATTTTCGGGTCCATACACTTTTAAATTTCCGATTTTTTGTTAAATTCCAAAAGTCCACCCATCTGACCCAATGTCTAGTACCACATAGCACCATACAACAGATGTTCTTTTTTTCAAATTTCTCCTTTTTTCAGGAACATGCATTTGAATCTTCGCAAAAGTACAAAGAGGGCAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGTGATGAGGGACAAATG</pcr_primer_p1>
		<pcr_primer_p2>TTCTGAATGCTCGAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGTGTGATGAGGGACAAATGGAGGTCAAGGGGGTGATAAATTTTTTGAAAATGGAAATTTTGGCGCCAAAATGAATGTTTGGGAATAAGGAATTTTCTAAGGAATAGAAAGGTTTCAATCATAATAGAATCGAAGGATTTAAGAATCCAACAACCCAAATAGCTAATTGTAAGGAAACAGAATCTAAAAACCAACAATCTAAGATTTCAAGATTTCAAGGATCCGAGATTCCAAAAATTCGAGCATTCAGAA</canonical_amplicon>
		<polymorphic_amplicon>AGTGTGATGAGGGACAAATGGAGGTCAAGGGGGTGATAAATTTTTTGAAAATGGAAATTTTGGCGCCAAAATGAATGTTTGGGAATAAGGAATTTTCTAAGGAATAGAAAGGTTTCAATCATAATAGAATCGAAGGATTTAAGAATCCAACAACCCAAATAGCTAATTGTAAGGAAACAGAATCTAAAAACCAACAATCTYAGATTTCAAGATTTCAAGGATCCGAGATTCCAAAAATTCGAGCATTCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31634</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>40369</contig_pos>
        <strand></strand>
        <context>TTCAAGATTT[C/T]YAGGATCCGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGTAAGGAAACAGAATCTAAAAACCAACAATCTAAGATTTCAAGATTT</left_flank>
        <right_flank>AAGGATCCGAGATTCCAAAAATTCGAGCATTCAGAACTCCAAAAAATTTT</right_flank>
        <qual_score>33</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCAAAGTTGACTATTTTGGACACGAAATTTCGGTATTTTGAACTTTCCAGAATAGGTTATATTTTTTCAAAGCTCTGAATTCCAATTTTTCGAAAATGTTTTTCAAAATCTGAAAATCGCTAAATTTATTTTTTTTTCAGTGTAAACGTCGGGTGCGGTCCGGCCGAGGAGCGTGTCCTTCTGACCGGTCTTCATGCGGTCGCCGACATTTATTGTGAGATCTGCAAAACGACATTGGGATGGAAATATGTGAGTAGTATAAAGAACAGTTGAATAGGAGGGAGTGTGATGAGGGACAAATGGAGGTCAAGGGGGTGATAAATTTTTTGAAAATGGAAATTTTGGCGCCAAAATGAATGTTTGGGAATAAGGAATTTTCTAAGGAATAGAAAGGTTTCAATCATAATAGAATCGAAGGATTTAAGAATCCAACAACCCAAATAGCTAATTGTAAGGAAACAGAATCTAAAAACCAACAATCTAAGATTTCAAGATTTCAAGGATCCGAGATTCCAAAAATTCGAGCATTCAGAACTCCAAAAAATTTTAAAAAATCCAAAAAAAACCAAGGAATTCTGAAAACTCTAAAAGTTTGTAAAAATCCAAAAAACCAAAAATTCCAATGAATGTCAATTTTTCGGAGTTCTGGTGAACTCAAAAAAATTCAGAAATTCCGAAGAAGTTCTAGAAAATTCAAAATTTTAAATAAATCTTAAAAACTCCAAATATCCTATAAATGTAATTCCTGTAATTTCAAAAAACACAAAAATTCAAAAAATTCGAAAACCCTAATTCTCTATTCTATATTTTCGGGTCCATACACTTTTAAATTTCCGATTTTTTGTTAAATTCCAAAAGTCCACCCATCTGACCCAATGTCTAGTACCACATAGCACCATACAACAGATGTTCTTTTTTTCAAATTTCTCCTTTTTTCAGGAACATGCATTTGAATCTTCGCAAAAGTACAAAGAGGGCAAATTCATCATCGAATTGGC</canonical>
            <polymorphic>CTCCAAAGTTGACTATTTTGGACACGAAATTTCGGTATTTTGAACTTTCCAGAATAGGTTATATTTTTTCAAAGCTCTGAATTCCAATTTTTCGAAAATGTTTTTCAAAATCTGAAAATCGCTAAATTTATTTTTTTTTCAGTGTAAACGTCGGGTGCGGTCCGGCCGAGGAGCGTGTCCTTCTGACCGGTCTTCATGCGGTCGCCGACATTTATTGTGAGATCTGCAAAACGACATTGGGATGGAAATATGTGAGTAGTATAAAGAACAGTTGAATAGGAGGGAGTGTGATGAGGGACAAATGGAGGTCAAGGGGGTGATAAATTTTTTGAAAATGGAAATTTTGGCGCCAAAATGAATGTTTGGGAATAAGGAATTTTCTAAGGAATAGAAAGGTTTCAATCATAATAGAATCGAAGGATTTAAGAATCCAACAACCCAAATAGCTAATTGTAAGGAAACAGAATCTAAAAACCAACAATCTAAGATTTCAAGATTTYAAGGATCCGAGATTCCAAAAATTCGAGCATTCAGAACTCCAAAAAATTTTAAAAAATCCAAAAAAAACCAAGGAATTCTGAAAACTCTAAAAGTTTGTAAAAATCCAAAAAACCAAAAATTCCAATGAATGTCAATTTTTCGGAGTTCTGGTGAACTCAAAAAAATTCAGAAATTCCGAAGAAGTTCTAGAAAATTCAAAATTTTAAATAAATCTTAAAAACTCCAAATATCCTATAAATGTAATTCCTGTAATTTCAAAAAACACAAAAATTCAAAAAATTCGAAAACCCTAATTCTCTATTCTATATTTTCGGGTCCATACACTTTTAAATTTCCGATTTTTTGTTAAATTCCAAAAGTCCACCCATCTGACCCAATGTCTAGTACCACATAGCACCATACAACAGATGTTCTTTTTTTCAAATTTCTCCTTTTTTCAGGAACATGCATTTGAATCTTCGCAAAAGTACAAAGAGGGCAAATTCATCATCGAATTGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTAATTGTAAGGAAACAGAATC</pcr_primer_p1>
		<pcr_primer_p2>GGATATTTGGAGTTTTTAAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>AGCTAATTGTAAGGAAACAGAATCTAAAAACCAACAATCTAAGATTTCAAGATTTCAAGGATCCGAGATTCCAAAAATTCGAGCATTCAGAACTCCAAAAAATTTTAAAAAATCCAAAAAAAACCAAGGAATTCTGAAAACTCTAAAAGTTTGTAAAAATCCAAAAAACCAAAAATTCCAATGAATGTCAATTTTTCGGAGTTCTGGTGAACTCAAAAAAATTCAGAAATTCCGAAGAAGTTCTAGAAAATTCAAAATTTTAAATAAATCTTAAAAACTCCAAATATCC</canonical_amplicon>
		<polymorphic_amplicon>AGCTAATTGTAAGGAAACAGAATCTAAAAACCAACAATCTAAGATTTCAAGATTTYAAGGATCCGAGATTCCAAAAATTCGAGCATTCAGAACTCCAAAAAATTTTAAAAAATCCAAAAAAAACCAAGGAATTCTGAAAACTCTAAAAGTTTGTAAAAATCCAAAAAACCAAAAATTCCAATGAATGTCAATTTTTCGGAGTTCTGGTGAACTCAAAAAAATTCAGAAATTCCGAAGAAGTTCTAGAAAATTCAAAATTTTAAATAAATCTTAAAAACTCCAAATATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31635</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>40370</contig_pos>
        <strand>+</strand>
        <context>TCAAGATTTY[C/T]AGGATCCGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGTAAGGAAACAGAATCTAAAAACCAACAATCTAAGATTTCAAGATTTC</left_flank>
        <right_flank>AGGATCCGAGATTCCAAAAATTCGAGCATTCAGAACTCCAAAAAATTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAAAGTTGACTATTTTGGACACGAAATTTCGGTATTTTGAACTTTCCAGAATAGGTTATATTTTTTCAAAGCTCTGAATTCCAATTTTTCGAAAATGTTTTTCAAAATCTGAAAATCGCTAAATTTATTTTTTTTTCAGTGTAAACGTCGGGTGCGGTCCGGCCGAGGAGCGTGTCCTTCTGACCGGTCTTCATGCGGTCGCCGACATTTATTGTGAGATCTGCAAAACGACATTGGGATGGAAATATGTGAGTAGTATAAAGAACAGTTGAATAGGAGGGAGTGTGATGAGGGACAAATGGAGGTCAAGGGGGTGATAAATTTTTTGAAAATGGAAATTTTGGCGCCAAAATGAATGTTTGGGAATAAGGAATTTTCTAAGGAATAGAAAGGTTTCAATCATAATAGAATCGAAGGATTTAAGAATCCAACAACCCAAATAGCTAATTGTAAGGAAACAGAATCTAAAAACCAACAATCTAAGATTTCAAGATTTCAAGGATCCGAGATTCCAAAAATTCGAGCATTCAGAACTCCAAAAAATTTTAAAAAATCCAAAAAAAACCAAGGAATTCTGAAAACTCTAAAAGTTTGTAAAAATCCAAAAAACCAAAAATTCCAATGAATGTCAATTTTTCGGAGTTCTGGTGAACTCAAAAAAATTCAGAAATTCCGAAGAAGTTCTAGAAAATTCAAAATTTTAAATAAATCTTAAAAACTCCAAATATCCTATAAATGTAATTCCTGTAATTTCAAAAAACACAAAAATTCAAAAAATTCGAAAACCCTAATTCTCTATTCTATATTTTCGGGTCCATACACTTTTAAATTTCCGATTTTTTGTTAAATTCCAAAAGTCCACCCATCTGACCCAATGTCTAGTACCACATAGCACCATACAACAGATGTTCTTTTTTTCAAATTTCTCCTTTTTTCAGGAACATGCATTTGAATCTTCGCAAAAGTACAAAGAGGGCAAATTCATCATCGAATTGGCG</canonical>
            <polymorphic>TCCAAAGTTGACTATTTTGGACACGAAATTTCGGTATTTTGAACTTTCCAGAATAGGTTATATTTTTTCAAAGCTCTGAATTCCAATTTTTCGAAAATGTTTTTCAAAATCTGAAAATCGCTAAATTTATTTTTTTTTCAGTGTAAACGTCGGGTGCGGTCCGGCCGAGGAGCGTGTCCTTCTGACCGGTCTTCATGCGGTCGCCGACATTTATTGTGAGATCTGCAAAACGACATTGGGATGGAAATATGTGAGTAGTATAAAGAACAGTTGAATAGGAGGGAGTGTGATGAGGGACAAATGGAGGTCAAGGGGGTGATAAATTTTTTGAAAATGGAAATTTTGGCGCCAAAATGAATGTTTGGGAATAAGGAATTTTCTAAGGAATAGAAAGGTTTCAATCATAATAGAATCGAAGGATTTAAGAATCCAACAACCCAAATAGCTAATTGTAAGGAAACAGAATCTAAAAACCAACAATCTAAGATTTCAAGATTTCYAGGATCCGAGATTCCAAAAATTCGAGCATTCAGAACTCCAAAAAATTTTAAAAAATCCAAAAAAAACCAAGGAATTCTGAAAACTCTAAAAGTTTGTAAAAATCCAAAAAACCAAAAATTCCAATGAATGTCAATTTTTCGGAGTTCTGGTGAACTCAAAAAAATTCAGAAATTCCGAAGAAGTTCTAGAAAATTCAAAATTTTAAATAAATCTTAAAAACTCCAAATATCCTATAAATGTAATTCCTGTAATTTCAAAAAACACAAAAATTCAAAAAATTCGAAAACCCTAATTCTCTATTCTATATTTTCGGGTCCATACACTTTTAAATTTCCGATTTTTTGTTAAATTCCAAAAGTCCACCCATCTGACCCAATGTCTAGTACCACATAGCACCATACAACAGATGTTCTTTTTTTCAAATTTCTCCTTTTTTCAGGAACATGCATTTGAATCTTCGCAAAAGTACAAAGAGGGCAAATTCATCATCGAATTGGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTAATTGTAAGGAAACAGAATC</pcr_primer_p1>
		<pcr_primer_p2>GGATATTTGGAGTTTTTAAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>AGCTAATTGTAAGGAAACAGAATCTAAAAACCAACAATCTAAGATTTCAAGATTTCAAGGATCCGAGATTCCAAAAATTCGAGCATTCAGAACTCCAAAAAATTTTAAAAAATCCAAAAAAAACCAAGGAATTCTGAAAACTCTAAAAGTTTGTAAAAATCCAAAAAACCAAAAATTCCAATGAATGTCAATTTTTCGGAGTTCTGGTGAACTCAAAAAAATTCAGAAATTCCGAAGAAGTTCTAGAAAATTCAAAATTTTAAATAAATCTTAAAAACTCCAAATATCC</canonical_amplicon>
		<polymorphic_amplicon>AGCTAATTGTAAGGAAACAGAATCTAAAAACCAACAATCTAAGATTTCAAGATTTCYAGGATCCGAGATTCCAAAAATTCGAGCATTCAGAACTCCAAAAAATTTTAAAAAATCCAAAAAAAACCAAGGAATTCTGAAAACTCTAAAAGTTTGTAAAAATCCAAAAAACCAAAAATTCCAATGAATGTCAATTTTTCGGAGTTCTGGTGAACTCAAAAAAATTCAGAAATTCCGAAGAAGTTCTAGAAAATTCAAAATTTTAAATAAATCTTAAAAACTCCAAATATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31636</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>40406</contig_pos>
        <strand>+</strand>
        <context>GCATTCAGAA[C/T]TCCaaaaaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTTCAAGATTTCAAGGATCCGAGATTCCAAAAATTCGAGCATTCAGAA</left_flank>
        <right_flank>TCCAAAAAATTTTAAAAAATCCAAAAAAAACCAAGGAATTCTGAAAACTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGAACTTTCCAGAATAGGTTATATTTTTTCAAAGCTCTGAATTCCAATTTTTCGAAAATGTTTTTCAAAATCTGAAAATCGCTAAATTTATTTTTTTTTCAGTGTAAACGTCGGGTGCGGTCCGGCCGAGGAGCGTGTCCTTCTGACCGGTCTTCATGCGGTCGCCGACATTTATTGTGAGATCTGCAAAACGACATTGGGATGGAAATATGTGAGTAGTATAAAGAACAGTTGAATAGGAGGGAGTGTGATGAGGGACAAATGGAGGTCAAGGGGGTGATAAATTTTTTGAAAATGGAAATTTTGGCGCCAAAATGAATGTTTGGGAATAAGGAATTTTCTAAGGAATAGAAAGGTTTCAATCATAATAGAATCGAAGGATTTAAGAATCCAACAACCCAAATAGCTAATTGTAAGGAAACAGAATCTAAAAACCAACAATCTAAGATTTCAAGATTTCAAGGATCCGAGATTCCAAAAATTCGAGCATTCAGAACTCCAAAAAATTTTAAAAAATCCAAAAAAAACCAAGGAATTCTGAAAACTCTAAAAGTTTGTAAAAATCCAAAAAACCAAAAATTCCAATGAATGTCAATTTTTCGGAGTTCTGGTGAACTCAAAAAAATTCAGAAATTCCGAAGAAGTTCTAGAAAATTCAAAATTTTAAATAAATCTTAAAAACTCCAAATATCCTATAAATGTAATTCCTGTAATTTCAAAAAACACAAAAATTCAAAAAATTCGAAAACCCTAATTCTCTATTCTATATTTTCGGGTCCATACACTTTTAAATTTCCGATTTTTTGTTAAATTCCAAAAGTCCACCCATCTGACCCAATGTCTAGTACCACATAGCACCATACAACAGATGTTCTTTTTTTCAAATTTCTCCTTTTTTCAGGAACATGCATTTGAATCTTCGCAAAAGTACAAAGAGGGCAAATTCATCATCGAATTGGCGCATATGGTGAAGGACAACGGATGGGATGAGCAGAAC</canonical>
            <polymorphic>TTTTGAACTTTCCAGAATAGGTTATATTTTTTCAAAGCTCTGAATTCCAATTTTTCGAAAATGTTTTTCAAAATCTGAAAATCGCTAAATTTATTTTTTTTTCAGTGTAAACGTCGGGTGCGGTCCGGCCGAGGAGCGTGTCCTTCTGACCGGTCTTCATGCGGTCGCCGACATTTATTGTGAGATCTGCAAAACGACATTGGGATGGAAATATGTGAGTAGTATAAAGAACAGTTGAATAGGAGGGAGTGTGATGAGGGACAAATGGAGGTCAAGGGGGTGATAAATTTTTTGAAAATGGAAATTTTGGCGCCAAAATGAATGTTTGGGAATAAGGAATTTTCTAAGGAATAGAAAGGTTTCAATCATAATAGAATCGAAGGATTTAAGAATCCAACAACCCAAATAGCTAATTGTAAGGAAACAGAATCTAAAAACCAACAATCTAAGATTTCAAGATTTCAAGGATCCGAGATTCCAAAAATTCGAGCATTCAGAAYTCCAAAAAATTTTAAAAAATCCAAAAAAAACCAAGGAATTCTGAAAACTCTAAAAGTTTGTAAAAATCCAAAAAACCAAAAATTCCAATGAATGTCAATTTTTCGGAGTTCTGGTGAACTCAAAAAAATTCAGAAATTCCGAAGAAGTTCTAGAAAATTCAAAATTTTAAATAAATCTTAAAAACTCCAAATATCCTATAAATGTAATTCCTGTAATTTCAAAAAACACAAAAATTCAAAAAATTCGAAAACCCTAATTCTCTATTCTATATTTTCGGGTCCATACACTTTTAAATTTCCGATTTTTTGTTAAATTCCAAAAGTCCACCCATCTGACCCAATGTCTAGTACCACATAGCACCATACAACAGATGTTCTTTTTTTCAAATTTCTCCTTTTTTCAGGAACATGCATTTGAATCTTCGCAAAAGTACAAAGAGGGCAAATTCATCATCGAATTGGCGCATATGGTGAAGGACAACGGATGGGATGAGCAGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTAATTGTAAGGAAACAGAATC</pcr_primer_p1>
		<pcr_primer_p2>GGATATTTGGAGTTTTTAAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>AGCTAATTGTAAGGAAACAGAATCTAAAAACCAACAATCTAAGATTTCAAGATTTCAAGGATCCGAGATTCCAAAAATTCGAGCATTCAGAACTCCAAAAAATTTTAAAAAATCCAAAAAAAACCAAGGAATTCTGAAAACTCTAAAAGTTTGTAAAAATCCAAAAAACCAAAAATTCCAATGAATGTCAATTTTTCGGAGTTCTGGTGAACTCAAAAAAATTCAGAAATTCCGAAGAAGTTCTAGAAAATTCAAAATTTTAAATAAATCTTAAAAACTCCAAATATCC</canonical_amplicon>
		<polymorphic_amplicon>AGCTAATTGTAAGGAAACAGAATCTAAAAACCAACAATCTAAGATTTCAAGATTTCAAGGATCCGAGATTCCAAAAATTCGAGCATTCAGAAYTCCAAAAAATTTTAAAAAATCCAAAAAAAACCAAGGAATTCTGAAAACTCTAAAAGTTTGTAAAAATCCAAAAAACCAAAAATTCCAATGAATGTCAATTTTTCGGAGTTCTGGTGAACTCAAAAAAATTCAGAAATTCCGAAGAAGTTCTAGAAAATTCAAAATTTTAAATAAATCTTAAAAACTCCAAATATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31637</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>42396</contig_pos>
        <strand>+</strand>
        <context>CCGAATTTCT[A/G]GAATTTCTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCT</left_flank>
        <right_flank>GAATTTCTGATTTTTCTAAATTTCCCGGAATCCTATAGGCCTGAATTTCG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCACGCGGCGATTTATCTCTAATCCTTTGCGTCTCCTCTCATCTCATGCTATCTCGCCCTTCTACTAGGTACTTTTCTATTTTTACTTCTTCCCCCCACTTTCAACGGTTCCTTTTTAGCCATTTTCCTTTTTTTATTTTTCCGGAATTTTCTGTGTGACGTGGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCTAAAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAACTTTTTAAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCACTGACTACAGTAATCTCAACGACAAGCACTGGACCTACAAGTAATTCGAAAGATCAAGAATTCGAGTTGGTCGAAAAGTGAGTTGGTTTTTTGTTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCTGGAATTTCTGATTTTTCTAAATTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAATTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAATTTTGAGGATTTTTAGGGATTTTACGCATTTCGTAATTTTTGTATATACTGGGGTTTTTGGAATTCTGAAATTCTGAGTTTTTTATAATTTTTGAATTTCTGAATTTCCAGAAATTTCCTGGATTTTCGGGTATTTTGGGGTTTTTATGATTTTTGGAAACTTTCGAATTTTTTGAATTTTTTCGAATTTCTGAATTTCTGAGCAATTTGGTTTTGAGCAATCTGAATAAGTTCAATAAATTTCCAAGGAATTTTATGACCGAAAAAATACTAGACCCCAGTTTTATGTTCCATATCTCTCGAGCTGAGGTAGTTTAGTCAAGAATTCGATATAATTTTTCTTCAAAAATTATGAACTTT</canonical>
            <polymorphic>AAATCACGCGGCGATTTATCTCTAATCCTTTGCGTCTCCTCTCATCTCATGCTATCTCGCCCTTCTACTAGGTACTTTTCTATTTTTACTTCTTCCCCCCACTTTCAACGGTTCCTTTTTAGCCATTTTCCTTTTTTTATTTTTCCGGAATTTTCTGTGTGACGTGGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCTAAAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAACTTTTTAAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCACTGACTACAGTAATCTCAACGACAAGCACTGGACCTACAAGTAATTCGAAAGATCAAGAATTCGAGTTGGTCGAAAAGTGAGTTGGTTTTTTGTTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCTRGAATTTCTGATTTTTCTAAATTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAATTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAATTTTGAGGATTTTTAGGGATTTTACGCATTTCGTAATTTTTGTATATACTGGGGTTTTTGGAATTCTGAAATTCTGAGTTTTTTATAATTTTTGAATTTCTGAATTTCCAGAAATTTCCTGGATTTTCGGGTATTTTGGGGTTTTTATGATTTTTGGAAACTTTCGAATTTTTTGAATTTTTTCGAATTTCTGAATTTCTGAGCAATTTGGTTTTGAGCAATCTGAATAAGTTCAATAAATTTCCAAGGAATTTTATGACCGAAAAAATACTAGACCCCAGTTTTATGTTCCATATCTCTCGAGCTGAGGTAGTTTAGTCAAGAATTCGATATAATTTTTCTTCAAAAATTATGAACTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAGTAATTCGAAAGATCAAGA</pcr_primer_p1>
		<pcr_primer_p2>ATTCCAAAATTCCCAACAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAAGTAATTCGAAAGATCAAGAATTCGAGTTGGTCGAAAAGTGAGTTGGTTTTTTGTTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCTGGAATTTCTGATTTTTCTAAATTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAATTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAAT</canonical_amplicon>
		<polymorphic_amplicon>ACAAGTAATTCGAAAGATCAAGAATTCGAGTTGGTCGAAAAGTGAGTTGGTTTTTTGTTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCTRGAATTTCTGATTTTTCTAAATTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAATTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31638</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>42417</contig_pos>
        <strand>+</strand>
        <context>TTTTTCTAAA[C/T]TTCCCGGAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGAGCTTTTTGGAAATCCGAATTTCTGGAATTTCTGATTTTTCTAAA</left_flank>
        <right_flank>TTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAATTTGGGATTTTTGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAATCCTTTGCGTCTCCTCTCATCTCATGCTATCTCGCCCTTCTACTAGGTACTTTTCTATTTTTACTTCTTCCCCCCACTTTCAACGGTTCCTTTTTAGCCATTTTCCTTTTTTTATTTTTCCGGAATTTTCTGTGTGACGTGGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCTAAAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAACTTTTTAAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCACTGACTACAGTAATCTCAACGACAAGCACTGGACCTACAAGTAATTCGAAAGATCAAGAATTCGAGTTGGTCGAAAAGTGAGTTGGTTTTTTGTTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCTGGAATTTCTGATTTTTCTAAATTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAATTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAATTTTGAGGATTTTTAGGGATTTTACGCATTTCGTAATTTTTGTATATACTGGGGTTTTTGGAATTCTGAAATTCTGAGTTTTTTATAATTTTTGAATTTCTGAATTTCCAGAAATTTCCTGGATTTTCGGGTATTTTGGGGTTTTTATGATTTTTGGAAACTTTCGAATTTTTTGAATTTTTTCGAATTTCTGAATTTCTGAGCAATTTGGTTTTGAGCAATCTGAATAAGTTCAATAAATTTCCAAGGAATTTTATGACCGAAAAAATACTAGACCCCAGTTTTATGTTCCATATCTCTCGAGCTGAGGTAGTTTAGTCAAGAATTCGATATAATTTTTCTTCAAAAATTATGAACTTTTCCTATGAATCTGCCTACTTT</canonical>
            <polymorphic>CTAATCCTTTGCGTCTCCTCTCATCTCATGCTATCTCGCCCTTCTACTAGGTACTTTTCTATTTTTACTTCTTCCCCCCACTTTCAACGGTTCCTTTTTAGCCATTTTCCTTTTTTTATTTTTCCGGAATTTTCTGTGTGACGTGGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCTAAAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAACTTTTTAAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCACTGACTACAGTAATCTCAACGACAAGCACTGGACCTACAAGTAATTCGAAAGATCAAGAATTCGAGTTGGTCGAAAAGTGAGTTGGTTTTTTGTTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCTGGAATTTCTGATTTTTCTAAAYTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAATTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAATTTTGAGGATTTTTAGGGATTTTACGCATTTCGTAATTTTTGTATATACTGGGGTTTTTGGAATTCTGAAATTCTGAGTTTTTTATAATTTTTGAATTTCTGAATTTCCAGAAATTTCCTGGATTTTCGGGTATTTTGGGGTTTTTATGATTTTTGGAAACTTTCGAATTTTTTGAATTTTTTCGAATTTCTGAATTTCTGAGCAATTTGGTTTTGAGCAATCTGAATAAGTTCAATAAATTTCCAAGGAATTTTATGACCGAAAAAATACTAGACCCCAGTTTTATGTTCCATATCTCTCGAGCTGAGGTAGTTTAGTCAAGAATTCGATATAATTTTTCTTCAAAAATTATGAACTTTTCCTATGAATCTGCCTACTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>127 93 87 74 71 63 58 54 45 45 43 33 33 25 25 17 11 11 10 10 9 9 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>127 93 87 74 71 63 58 54 45 45 43 42 33 33 25 11 11 10 10 9 9 8 8 8 8 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>127 77 74 71 67 54 45 36 34 34 33 33 27 26 25 20 17 17 17 16 14 11 11 11 10 10 10 9 9 8 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>127 77 74 71 67 54 45 42 36 34 34 33 33 27 26 20 17 17 16 14 11 11 11 10 10 10 9 9 8 8 8 8 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAGTAATTCGAAAGATCAAGA</pcr_primer_p1>
		<pcr_primer_p2>ATTCCAAAATTCCCAACAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAAGTAATTCGAAAGATCAAGAATTCGAGTTGGTCGAAAAGTGAGTTGGTTTTTTGTTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCTGGAATTTCTGATTTTTCTAAATTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAATTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAAT</canonical_amplicon>
		<polymorphic_amplicon>ACAAGTAATTCGAAAGATCAAGAATTCGAGTTGGTCGAAAAGTGAGTTGGTTTTTTGTTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCTGGAATTTCTGATTTTTCTAAAYTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAATTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31639</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>42452</contig_pos>
        <strand>+</strand>
        <context>TTTCGTGGAA[A/T]TTTGGGATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTGATTTTTCTAAATTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAA</left_flank>
        <right_flank>TTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCTGAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGCCCTTCTACTAGGTACTTTTCTATTTTTACTTCTTCCCCCCACTTTCAACGGTTCCTTTTTAGCCATTTTCCTTTTTTTATTTTTCCGGAATTTTCTGTGTGACGTGGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCTAAAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAACTTTTTAAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCACTGACTACAGTAATCTCAACGACAAGCACTGGACCTACAAGTAATTCGAAAGATCAAGAATTCGAGTTGGTCGAAAAGTGAGTTGGTTTTTTGTTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCTGGAATTTCTGATTTTTCTAAATTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAATTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAATTTTGAGGATTTTTAGGGATTTTACGCATTTCGTAATTTTTGTATATACTGGGGTTTTTGGAATTCTGAAATTCTGAGTTTTTTATAATTTTTGAATTTCTGAATTTCCAGAAATTTCCTGGATTTTCGGGTATTTTGGGGTTTTTATGATTTTTGGAAACTTTCGAATTTTTTGAATTTTTTCGAATTTCTGAATTTCTGAGCAATTTGGTTTTGAGCAATCTGAATAAGTTCAATAAATTTCCAAGGAATTTTATGACCGAAAAAATACTAGACCCCAGTTTTATGTTCCATATCTCTCGAGCTGAGGTAGTTTAGTCAAGAATTCGATATAATTTTTCTTCAAAAATTATGAACTTTTCCTATGAATCTGCCTACTTTTTGTGAGTTTTTGCATGCTATTTTTTTGGAGATTT</canonical>
            <polymorphic>TCGCCCTTCTACTAGGTACTTTTCTATTTTTACTTCTTCCCCCCACTTTCAACGGTTCCTTTTTAGCCATTTTCCTTTTTTTATTTTTCCGGAATTTTCTGTGTGACGTGGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCTAAAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAACTTTTTAAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCACTGACTACAGTAATCTCAACGACAAGCACTGGACCTACAAGTAATTCGAAAGATCAAGAATTCGAGTTGGTCGAAAAGTGAGTTGGTTTTTTGTTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCTGGAATTTCTGATTTTTCTAAATTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAWTTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAATTTTGAGGATTTTTAGGGATTTTACGCATTTCGTAATTTTTGTATATACTGGGGTTTTTGGAATTCTGAAATTCTGAGTTTTTTATAATTTTTGAATTTCTGAATTTCCAGAAATTTCCTGGATTTTCGGGTATTTTGGGGTTTTTATGATTTTTGGAAACTTTCGAATTTTTTGAATTTTTTCGAATTTCTGAATTTCTGAGCAATTTGGTTTTGAGCAATCTGAATAAGTTCAATAAATTTCCAAGGAATTTTATGACCGAAAAAATACTAGACCCCAGTTTTATGTTCCATATCTCTCGAGCTGAGGTAGTTTAGTCAAGAATTCGATATAATTTTTCTTCAAAAATTATGAACTTTTCCTATGAATCTGCCTACTTTTTGTGAGTTTTTGCATGCTATTTTTTTGGAGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>93 93 92 87 74 71 63 54 45 45 43 33 33 25 25 17 11 11 10 10 9 9 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>93 93 92 87 74 71 63 54 45 45 44 43 33 25 25 17 11 10 10 9 9 8 8 8 8 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>92 77 74 71 69 67 54 45 36 34 33 33 27 26 25 20 17 17 17 16 14 11 11 11 10 10 10 9 9 8 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>92 77 74 71 69 67 54 45 44 36 34 33 27 26 25 20 17 17 17 16 14 11 11 10 10 10 9 9 8 8 8 8 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAGTAATTCGAAAGATCAAGA</pcr_primer_p1>
		<pcr_primer_p2>ATTCCAAAATTCCCAACAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAAGTAATTCGAAAGATCAAGAATTCGAGTTGGTCGAAAAGTGAGTTGGTTTTTTGTTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCTGGAATTTCTGATTTTTCTAAATTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAATTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAAT</canonical_amplicon>
		<polymorphic_amplicon>ACAAGTAATTCGAAAGATCAAGAATTCGAGTTGGTCGAAAAGTGAGTTGGTTTTTTGTTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCTGGAATTTCTGATTTTTCTAAATTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAWTTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31640</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>42490</contig_pos>
        <strand>+</strand>
        <context>TCTGAATTCC[C/T]GAAGTTCYGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTCGTGGAAATTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCC</left_flank>
        <right_flank>GAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAATTTT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCCCCACTTTCAACGGTTCCTTTTTAGCCATTTTCCTTTTTTTATTTTTCCGGAATTTTCTGTGTGACGTGGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCTAAAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAACTTTTTAAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCACTGACTACAGTAATCTCAACGACAAGCACTGGACCTACAAGTAATTCGAAAGATCAAGAATTCGAGTTGGTCGAAAAGTGAGTTGGTTTTTTGTTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCTGGAATTTCTGATTTTTCTAAATTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAATTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAATTTTGAGGATTTTTAGGGATTTTACGCATTTCGTAATTTTTGTATATACTGGGGTTTTTGGAATTCTGAAATTCTGAGTTTTTTATAATTTTTGAATTTCTGAATTTCCAGAAATTTCCTGGATTTTCGGGTATTTTGGGGTTTTTATGATTTTTGGAAACTTTCGAATTTTTTGAATTTTTTCGAATTTCTGAATTTCTGAGCAATTTGGTTTTGAGCAATCTGAATAAGTTCAATAAATTTCCAAGGAATTTTATGACCGAAAAAATACTAGACCCCAGTTTTATGTTCCATATCTCTCGAGCTGAGGTAGTTTAGTCAAGAATTCGATATAATTTTTCTTCAAAAATTATGAACTTTTCCTATGAATCTGCCTACTTTTTGTGAGTTTTTGCATGCTATTTTTTTGGAGATTTTGGAGAATGTGTCACAAAAAAACAGTGTTACTTTTTGT</canonical>
            <polymorphic>CCCCCCACTTTCAACGGTTCCTTTTTAGCCATTTTCCTTTTTTTATTTTTCCGGAATTTTCTGTGTGACGTGGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCTAAAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAACTTTTTAAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCACTGACTACAGTAATCTCAACGACAAGCACTGGACCTACAAGTAATTCGAAAGATCAAGAATTCGAGTTGGTCGAAAAGTGAGTTGGTTTTTTGTTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCTGGAATTTCTGATTTTTCTAAATTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAATTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCYGAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAATTTTGAGGATTTTTAGGGATTTTACGCATTTCGTAATTTTTGTATATACTGGGGTTTTTGGAATTCTGAAATTCTGAGTTTTTTATAATTTTTGAATTTCTGAATTTCCAGAAATTTCCTGGATTTTCGGGTATTTTGGGGTTTTTATGATTTTTGGAAACTTTCGAATTTTTTGAATTTTTTCGAATTTCTGAATTTCTGAGCAATTTGGTTTTGAGCAATCTGAATAAGTTCAATAAATTTCCAAGGAATTTTATGACCGAAAAAATACTAGACCCCAGTTTTATGTTCCATATCTCTCGAGCTGAGGTAGTTTAGTCAAGAATTCGATATAATTTTTCTTCAAAAATTATGAACTTTTCCTATGAATCTGCCTACTTTTTGTGAGTTTTTGCATGCTATTTTTTTGGAGATTTTGGAGAATGTGTCACAAAAAAACAGTGTTACTTTTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTTGGTCGAAAAGTGAGTT</pcr_primer_p1>
		<pcr_primer_p2>TAAAATCCCTAAAAATCCTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAGTTGGTCGAAAAGTGAGTTGGTTTTTTGTTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCTGGAATTTCTGATTTTTCTAAATTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAATTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAATTTTGAGGATTTTTAGGGATTTTA</canonical_amplicon>
		<polymorphic_amplicon>GAGTTGGTCGAAAAGTGAGTTGGTTTTTTGTTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCTGGAATTTCTGATTTTTCTAAATTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAATTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCYGAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAATTTTGAGGATTTTTAGGGATTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31641</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>42498</contig_pos>
        <strand>+</strand>
        <context>CCYGAAGTTC[C/T]GAAATTGTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAAATTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTC</left_flank>
        <right_flank>GAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAATTTTGAGGATTT</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAACGGTTCCTTTTTAGCCATTTTCCTTTTTTTATTTTTCCGGAATTTTCTGTGTGACGTGGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCTAAAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAACTTTTTAAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCACTGACTACAGTAATCTCAACGACAAGCACTGGACCTACAAGTAATTCGAAAGATCAAGAATTCGAGTTGGTCGAAAAGTGAGTTGGTTTTTTGTTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCTGGAATTTCTGATTTTTCTAAATTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAATTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAATTTTGAGGATTTTTAGGGATTTTACGCATTTCGTAATTTTTGTATATACTGGGGTTTTTGGAATTCTGAAATTCTGAGTTTTTTATAATTTTTGAATTTCTGAATTTCCAGAAATTTCCTGGATTTTCGGGTATTTTGGGGTTTTTATGATTTTTGGAAACTTTCGAATTTTTTGAATTTTTTCGAATTTCTGAATTTCTGAGCAATTTGGTTTTGAGCAATCTGAATAAGTTCAATAAATTTCCAAGGAATTTTATGACCGAAAAAATACTAGACCCCAGTTTTATGTTCCATATCTCTCGAGCTGAGGTAGTTTAGTCAAGAATTCGATATAATTTTTCTTCAAAAATTATGAACTTTTCCTATGAATCTGCCTACTTTTTGTGAGTTTTTGCATGCTATTTTTTTGGAGATTTTGGAGAATGTGTCACAAAAAAACAGTGTTACTTTTTGTCACAAAAA</canonical>
            <polymorphic>TTTCAACGGTTCCTTTTTAGCCATTTTCCTTTTTTTATTTTTCCGGAATTTTCTGTGTGACGTGGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCTAAAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAACTTTTTAAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCACTGACTACAGTAATCTCAACGACAAGCACTGGACCTACAAGTAATTCGAAAGATCAAGAATTCGAGTTGGTCGAAAAGTGAGTTGGTTTTTTGTTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCTGGAATTTCTGATTTTTCTAAATTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAATTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCYGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAATTTTGAGGATTTTTAGGGATTTTACGCATTTCGTAATTTTTGTATATACTGGGGTTTTTGGAATTCTGAAATTCTGAGTTTTTTATAATTTTTGAATTTCTGAATTTCCAGAAATTTCCTGGATTTTCGGGTATTTTGGGGTTTTTATGATTTTTGGAAACTTTCGAATTTTTTGAATTTTTTCGAATTTCTGAATTTCTGAGCAATTTGGTTTTGAGCAATCTGAATAAGTTCAATAAATTTCCAAGGAATTTTATGACCGAAAAAATACTAGACCCCAGTTTTATGTTCCATATCTCTCGAGCTGAGGTAGTTTAGTCAAGAATTCGATATAATTTTTCTTCAAAAATTATGAACTTTTCCTATGAATCTGCCTACTTTTTGTGAGTTTTTGCATGCTATTTTTTTGGAGATTTTGGAGAATGTGTCACAAAAAAACAGTGTTACTTTTTGTCACAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTTGGTCGAAAAGTGAGTT</pcr_primer_p1>
		<pcr_primer_p2>TAAAATCCCTAAAAATCCTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAGTTGGTCGAAAAGTGAGTTGGTTTTTTGTTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCTGGAATTTCTGATTTTTCTAAATTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAATTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAATTTTGAGGATTTTTAGGGATTTTA</canonical_amplicon>
		<polymorphic_amplicon>GAGTTGGTCGAAAAGTGAGTTGGTTTTTTGTTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCTGGAATTTCTGATTTTTCTAAATTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAATTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCYGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAATTTTGAGGATTTTTAGGGATTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31642</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>42561</contig_pos>
        <strand>+</strand>
        <context>AGGGATTTTA[C/G]GCATTTCGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCCTGGACTGTTGGGAATTTTGGAATTTTGAGGATTTTTAGGGATTTTA</left_flank>
        <right_flank>GCATTTCGTAATTTTTGTATATACTGGGGTTTTTGGAATTCTGAAATTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCTAAAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAACTTTTTAAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCACTGACTACAGTAATCTCAACGACAAGCACTGGACCTACAAGTAATTCGAAAGATCAAGAATTCGAGTTGGTCGAAAAGTGAGTTGGTTTTTTGTTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCTGGAATTTCTGATTTTTCTAAATTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAATTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAATTTTGAGGATTTTTAGGGATTTTACGCATTTCGTAATTTTTGTATATACTGGGGTTTTTGGAATTCTGAAATTCTGAGTTTTTTATAATTTTTGAATTTCTGAATTTCCAGAAATTTCCTGGATTTTCGGGTATTTTGGGGTTTTTATGATTTTTGGAAACTTTCGAATTTTTTGAATTTTTTCGAATTTCTGAATTTCTGAGCAATTTGGTTTTGAGCAATCTGAATAAGTTCAATAAATTTCCAAGGAATTTTATGACCGAAAAAATACTAGACCCCAGTTTTATGTTCCATATCTCTCGAGCTGAGGTAGTTTAGTCAAGAATTCGATATAATTTTTCTTCAAAAATTATGAACTTTTCCTATGAATCTGCCTACTTTTTGTGAGTTTTTGCATGCTATTTTTTTGGAGATTTTGGAGAATGTGTCACAAAAAAACAGTGTTACTTTTTGTCACAAAAAAACAGTGTTATTTTTTTGGGTTTTCAGTTATGCCAATTTTTTGCTTTTCTGTATTTTTTACTA</canonical>
            <polymorphic>GGCAATTTATTGACTTTTTGATCCCCGATTTTTGATTCCTGAAAACCTAAAAACCCCATTTTTCTTCTGAAATTCCAAAATTCCTTTTTTGACCTAAACACGTGAAAAAGAATGAAAACTTTTTTCTTAAAATGTCGGAACTTTTTAAAAATTCTGAATTTTTTTCTAGAACAATGAGGGATGACAAACCACTGACTACAGTAATCTCAACGACAAGCACTGGACCTACAAGTAATTCGAAAGATCAAGAATTCGAGTTGGTCGAAAAGTGAGTTGGTTTTTTGTTCAGACTGAAATTCTGGGATTTTTGAGCTTTTTGGAAATCCGAATTTCTGGAATTTCTGATTTTTCTAAATTTCCCGGAATCCTATAGGCCTGAATTTCGTGGAAATTTGGGATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAATTTTGAGGATTTTTAGGGATTTTASGCATTTCGTAATTTTTGTATATACTGGGGTTTTTGGAATTCTGAAATTCTGAGTTTTTTATAATTTTTGAATTTCTGAATTTCCAGAAATTTCCTGGATTTTCGGGTATTTTGGGGTTTTTATGATTTTTGGAAACTTTCGAATTTTTTGAATTTTTTCGAATTTCTGAATTTCTGAGCAATTTGGTTTTGAGCAATCTGAATAAGTTCAATAAATTTCCAAGGAATTTTATGACCGAAAAAATACTAGACCCCAGTTTTATGTTCCATATCTCTCGAGCTGAGGTAGTTTAGTCAAGAATTCGATATAATTTTTCTTCAAAAATTATGAACTTTTCCTATGAATCTGCCTACTTTTTGTGAGTTTTTGCATGCTATTTTTTTGGAGATTTTGGAGAATGTGTCACAAAAAAACAGTGTTACTTTTTGTCACAAAAAAACAGTGTTATTTTTTTGGGTTTTCAGTTATGCCAATTTTTTGCTTTTCTGTATTTTTTACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTGAATATACCGGGTTTT</pcr_primer_p1>
		<pcr_primer_p2>CGAAAGTTTCCAAAAATCATAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAATTTTGAGGATTTTTAGGGATTTTACGCATTTCGTAATTTTTGTATATACTGGGGTTTTTGGAATTCTGAAATTCTGAGTTTTTTATAATTTTTGAATTTCTGAATTTCCAGAAATTTCCTGGATTTTCGGGTATTTTGGGGTTTTTATGATTTTTGGAAACTTTCG</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTGAATATACCGGGTTTTCTGAATTCCTGAAGTTCTGAAATTGTGAGTTTCCTGGACTGTTGGGAATTTTGGAATTTTGAGGATTTTTAGGGATTTTASGCATTTCGTAATTTTTGTATATACTGGGGTTTTTGGAATTCTGAAATTCTGAGTTTTTTATAATTTTTGAATTTCTGAATTTCCAGAAATTTCCTGGATTTTCGGGTATTTTGGGGTTTTTATGATTTTTGGAAACTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31643</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>43173</contig_pos>
        <strand>+</strand>
        <context>ATTCAAAAAA[A/T]TTTGAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAACATTTGAATTCTGTAGATGTCTAAATTACGAGGATTATTCAAAAAA</left_flank>
        <right_flank>TTTGAAAAAAGTTGGGTCGGGGAACTTTTAAAAAATTGAATACTGTAAAT</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGGTTTTTATGATTTTTGGAAACTTTCGAATTTTTTGAATTTTTTCGAATTTCTGAATTTCTGAGCAATTTGGTTTTGAGCAATCTGAATAAGTTCAATAAATTTCCAAGGAATTTTATGACCGAAAAAATACTAGACCCCAGTTTTATGTTCCATATCTCTCGAGCTGAGGTAGTTTAGTCAAGAATTCGATATAATTTTTCTTCAAAAATTATGAACTTTTCCTATGAATCTGCCTACTTTTTGTGAGTTTTTGCATGCTATTTTTTTGGAGATTTTGGAGAATGTGTCACAAAAAAACAGTGTTACTTTTTGTCACAAAAAAACAGTGTTATTTTTTTGGGTTTTCAGTTATGCCAATTTTTTGCTTTTCTGTATTTTTTACTAAAAATCAGCGGGAAAAGAAACATTTCAATAATTTCAGTGAATATTACTTTTTAGAATTTTTAGAACATTTGAATTCTGTAGATGTCTAAATTACGAGGATTATTCAAAAAAATTTGAAAAAAGTTGGGTCGGGGAACTTTTAAAAAATTGAATACTGTAAATCCTGTAATATAAAAATTCCCAGATTTTAACCCTATTTATCTCGGTTACTGTAAGAGATATCAAAAAGTGATCAACTGACAAAACATTTTTGATTTTTTGATAAACTTTTTGTTAATTGATCACTTTTTGATATCTCCAGGAACCGAGATGAATTAACTCAAAGTTAAAAGTGTGGACTAGTGTCGGTAGCCCTAACTTTGACCTAATTTATCTCGGTTTCTGTGAAAGATATCAAAAAGTAATTGTCTAATGAAAATGAAATGCTTATCATAATATCACTAACATTAAATCAGTTGATCACTTTTAGATATCTATTACATAAACCGAAATAAATTGCCTCAAACTTAGTGGGCACTTCTATTAGAGGTTCCACGGTTCACCACAACGGTGGGTAATACCCTCCCATCATATGTATTAGTTTAGAAAAACATCTAAATTTAAAACAACTGA</canonical>
            <polymorphic>GGGGTTTTTATGATTTTTGGAAACTTTCGAATTTTTTGAATTTTTTCGAATTTCTGAATTTCTGAGCAATTTGGTTTTGAGCAATCTGAATAAGTTCAATAAATTTCCAAGGAATTTTATGACCGAAAAAATACTAGACCCCAGTTTTATGTTCCATATCTCTCGAGCTGAGGTAGTTTAGTCAAGAATTCGATATAATTTTTCTTCAAAAATTATGAACTTTTCCTATGAATCTGCCTACTTTTTGTGAGTTTTTGCATGCTATTTTTTTGGAGATTTTGGAGAATGTGTCACAAAAAAACAGTGTTACTTTTTGTCACAAAAAAACAGTGTTATTTTTTTGGGTTTTCAGTTATGCCAATTTTTTGCTTTTCTGTATTTTTTACTAAAAATCAGCGGGAAAAGAAACATTTCAATAATTTCAGTGAATATTACTTTTTAGAATTTTTAGAACATTTGAATTCTGTAGATGTCTAAATTACGAGGATTATTCAAAAAAWTTTGAAAAAAGTTGGGTCGGGGAACTTTTAAAAAATTGAATACTGTAAATCCTGTAATATAAAAATTCCCAGATTTTAACCCTATTTATCTCGGTTACTGTAAGAGATATCAAAAAGTGATCAACTGACAAAACATTTTTGATTTTTTGATAAACTTTTTGTTAATTGATCACTTTTTGATATCTCCAGGAACCGAGATGAATTAACTCAAAGTTAAAAGTGTGGACTAGTGTCGGTAGCCCTAACTTTGACCTAATTTATCTCGGTTTCTGTGAAAGATATCAAAAAGTAATTGTCTAATGAAAATGAAATGCTTATCATAATATCACTAACATTAAATCAGTTGATCACTTTTAGATATCTATTACATAAACCGAAATAAATTGCCTCAAACTTAGTGGGCACTTCTATTAGAGGTTCCACGGTTCACCACAACGGTGGGTAATACCCTCCCATCATATGTATTAGTTTAGAAAAACATCTAAATTTAAAACAACTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>421 256 74 65 45 39 29 17 16 11 10 9 8</canonical_bands>
                <polymorphic_bands>421 256 104 74 45 29 17 16 11 10 9 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>149 103 100 91 74 58 54 37 36 35 34 30 29 25 22 17 17 16 14 11 11 10 10 9 8</canonical_bands>
                <polymorphic_bands>149 103 100 91 74 58 57 54 37 36 34 30 29 25 17 17 16 14 11 11 10 10 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTTTAGAACATTTGAATTCTGT</pcr_primer_p1>
		<pcr_primer_p2>AATACATATGATGGGAGGGTATT</pcr_primer_p2>
		<pcr_amplicon_size>524</pcr_amplicon_size>
		<canonical_amplicon>AATTTTTAGAACATTTGAATTCTGTAGATGTCTAAATTACGAGGATTATTCAAAAAAATTTGAAAAAAGTTGGGTCGGGGAACTTTTAAAAAATTGAATACTGTAAATCCTGTAATATAAAAATTCCCAGATTTTAACCCTATTTATCTCGGTTACTGTAAGAGATATCAAAAAGTGATCAACTGACAAAACATTTTTGATTTTTTGATAAACTTTTTGTTAATTGATCACTTTTTGATATCTCCAGGAACCGAGATGAATTAACTCAAAGTTAAAAGTGTGGACTAGTGTCGGTAGCCCTAACTTTGACCTAATTTATCTCGGTTTCTGTGAAAGATATCAAAAAGTAATTGTCTAATGAAAATGAAATGCTTATCATAATATCACTAACATTAAATCAGTTGATCACTTTTAGATATCTATTACATAAACCGAAATAAATTGCCTCAAACTTAGTGGGCACTTCTATTAGAGGTTCCACGGTTCACCACAACGGTGGGTAATACCCTCCCATCATATGTATT</canonical_amplicon>
		<polymorphic_amplicon>AATTTTTAGAACATTTGAATTCTGTAGATGTCTAAATTACGAGGATTATTCAAAAAAWTTTGAAAAAAGTTGGGTCGGGGAACTTTTAAAAAATTGAATACTGTAAATCCTGTAATATAAAAATTCCCAGATTTTAACCCTATTTATCTCGGTTACTGTAAGAGATATCAAAAAGTGATCAACTGACAAAACATTTTTGATTTTTTGATAAACTTTTTGTTAATTGATCACTTTTTGATATCTCCAGGAACCGAGATGAATTAACTCAAAGTTAAAAGTGTGGACTAGTGTCGGTAGCCCTAACTTTGACCTAATTTATCTCGGTTTCTGTGAAAGATATCAAAAAGTAATTGTCTAATGAAAATGAAATGCTTATCATAATATCACTAACATTAAATCAGTTGATCACTTTTAGATATCTATTACATAAACCGAAATAAATTGCCTCAAACTTAGTGGGCACTTCTATTAGAGGTTCCACGGTTCACCACAACGGTGGGTAATACCCTCCCATCATATGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31644</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>43399</contig_pos>
        <strand></strand>
        <context>aaaagtgtgg[A/G]ytagtgtcGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGATATCTCCAGGAACCGAGATGAATTAACTCAAAGTTAAAAGTGTGG</left_flank>
        <right_flank>CTAGTGTCGGTAGCCCTAACTTTGACCTAATTTATCTCGGTTTCTGTGAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGAATCTGCCTACTTTTTGTGAGTTTTTGCATGCTATTTTTTTGGAGATTTTGGAGAATGTGTCACAAAAAAACAGTGTTACTTTTTGTCACAAAAAAACAGTGTTATTTTTTTGGGTTTTCAGTTATGCCAATTTTTTGCTTTTCTGTATTTTTTACTAAAAATCAGCGGGAAAAGAAACATTTCAATAATTTCAGTGAATATTACTTTTTAGAATTTTTAGAACATTTGAATTCTGTAGATGTCTAAATTACGAGGATTATTCAAAAAAATTTGAAAAAAGTTGGGTCGGGGAACTTTTAAAAAATTGAATACTGTAAATCCTGTAATATAAAAATTCCCAGATTTTAACCCTATTTATCTCGGTTACTGTAAGAGATATCAAAAAGTGATCAACTGACAAAACATTTTTGATTTTTTGATAAACTTTTTGTTAATTGATCACTTTTTGATATCTCCAGGAACCGAGATGAATTAACTCAAAGTTAAAAGTGTGGACTAGTGTCGGTAGCCCTAACTTTGACCTAATTTATCTCGGTTTCTGTGAAAGATATCAAAAAGTAATTGTCTAATGAAAATGAAATGCTTATCATAATATCACTAACATTAAATCAGTTGATCACTTTTAGATATCTATTACATAAACCGAAATAAATTGCCTCAAACTTAGTGGGCACTTCTATTAGAGGTTCCACGGTTCACCACAACGGTGGGTAATACCCTCCCATCATATGTATTAGTTTAGAAAAACATCTAAATTTAAAACAACTGAATTTAGCAAGATTAAACGTATTAGAACTTTTGAATTTTTCAAATCGACAAAAACCACCAAAATTTCTCATGAAAAAAATGCAGCGACTTTAGCACATGACCCAAAAAAAAAGACTGTGCAGCAGTTGTAACATTACTATAACAATTTGTAAGTGGTAGTACGTGACAGTCACTAGTCATACTTCTGTCAAAACGACAGAGGGCAAATGAGATAAGAGACAGAGTGA</canonical>
            <polymorphic>TATGAATCTGCCTACTTTTTGTGAGTTTTTGCATGCTATTTTTTTGGAGATTTTGGAGAATGTGTCACAAAAAAACAGTGTTACTTTTTGTCACAAAAAAACAGTGTTATTTTTTTGGGTTTTCAGTTATGCCAATTTTTTGCTTTTCTGTATTTTTTACTAAAAATCAGCGGGAAAAGAAACATTTCAATAATTTCAGTGAATATTACTTTTTAGAATTTTTAGAACATTTGAATTCTGTAGATGTCTAAATTACGAGGATTATTCAAAAAAATTTGAAAAAAGTTGGGTCGGGGAACTTTTAAAAAATTGAATACTGTAAATCCTGTAATATAAAAATTCCCAGATTTTAACCCTATTTATCTCGGTTACTGTAAGAGATATCAAAAAGTGATCAACTGACAAAACATTTTTGATTTTTTGATAAACTTTTTGTTAATTGATCACTTTTTGATATCTCCAGGAACCGAGATGAATTAACTCAAAGTTAAAAGTGTGGRCTAGTGTCGGTAGCCCTAACTTTGACCTAATTTATCTCGGTTTCTGTGAAAGATATCAAAAAGTAATTGTCTAATGAAAATGAAATGCTTATCATAATATCACTAACATTAAATCAGTTGATCACTTTTAGATATCTATTACATAAACCGAAATAAATTGCCTCAAACTTAGTGGGCACTTCTATTAGAGGTTCCACGGTTCACCACAACGGTGGGTAATACCCTCCCATCATATGTATTAGTTTAGAAAAACATCTAAATTTAAAACAACTGAATTTAGCAAGATTAAACGTATTAGAACTTTTGAATTTTTCAAATCGACAAAAACCACCAAAATTTCTCATGAAAAAAATGCAGCGACTTTAGCACATGACCCAAAAAAAAAGACTGTGCAGCAGTTGTAACATTACTATAACAATTTGTAAGTGGTAGTACGTGACAGTCACTAGTCATACTTCTGTCAAAACGACAGAGGGCAAATGAGATAAGAGACAGAGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACTAGT</site>
                <isoschizomers>
                    <enzyme>AhlI</enzyme>
                    <enzyme>BcuI</enzyme>
                    <enzyme>SpeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 445 55</canonical_bands>
                <polymorphic_bands>945 55</polymorphic_bands>
            </assay>
            <assay>
                <site>GACNNNNGTC</site>
                <isoschizomers>
                    <enzyme>BoxI</enzyme>
                    <enzyme>BstPAI</enzyme>
                    <enzyme>PshAI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 299 203</canonical_bands>
                <polymorphic_bands>701 299</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTAAATTACGAGGATTATTCAAA</pcr_primer_p1>
		<pcr_primer_p2>AATACATATGATGGGAGGGTATT</pcr_primer_p2>
		<pcr_amplicon_size>494</pcr_amplicon_size>
		<canonical_amplicon>TCTAAATTACGAGGATTATTCAAAAAAATTTGAAAAAAGTTGGGTCGGGGAACTTTTAAAAAATTGAATACTGTAAATCCTGTAATATAAAAATTCCCAGATTTTAACCCTATTTATCTCGGTTACTGTAAGAGATATCAAAAAGTGATCAACTGACAAAACATTTTTGATTTTTTGATAAACTTTTTGTTAATTGATCACTTTTTGATATCTCCAGGAACCGAGATGAATTAACTCAAAGTTAAAAGTGTGGACTAGTGTCGGTAGCCCTAACTTTGACCTAATTTATCTCGGTTTCTGTGAAAGATATCAAAAAGTAATTGTCTAATGAAAATGAAATGCTTATCATAATATCACTAACATTAAATCAGTTGATCACTTTTAGATATCTATTACATAAACCGAAATAAATTGCCTCAAACTTAGTGGGCACTTCTATTAGAGGTTCCACGGTTCACCACAACGGTGGGTAATACCCTCCCATCATATGTATT</canonical_amplicon>
		<polymorphic_amplicon>TCTAAATTACGAGGATTATTCAAAAAAATTTGAAAAAAGTTGGGTCGGGGAACTTTTAAAAAATTGAATACTGTAAATCCTGTAATATAAAAATTCCCAGATTTTAACCCTATTTATCTCGGTTACTGTAAGAGATATCAAAAAGTGATCAACTGACAAAACATTTTTGATTTTTTGATAAACTTTTTGTTAATTGATCACTTTTTGATATCTCCAGGAACCGAGATGAATTAACTCAAAGTTAAAAGTGTGGRCTAGTGTCGGTAGCCCTAACTTTGACCTAATTTATCTCGGTTTCTGTGAAAGATATCAAAAAGTAATTGTCTAATGAAAATGAAATGCTTATCATAATATCACTAACATTAAATCAGTTGATCACTTTTAGATATCTATTACATAAACCGAAATAAATTGCCTCAAACTTAGTGGGCACTTCTATTAGAGGTTCCACGGTTCACCACAACGGTGGGTAATACCCTCCCATCATATGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31645</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>43400</contig_pos>
        <strand></strand>
        <context>aaagtgtggr[C/T]tagtgtcGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGATATCTCCAGGAACCGAGATGAATTAACTCAAAGTTAAAAGTGTGGA</left_flank>
        <right_flank>TAGTGTCGGTAGCCCTAACTTTGACCTAATTTATCTCGGTTTCTGTGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAATCTGCCTACTTTTTGTGAGTTTTTGCATGCTATTTTTTTGGAGATTTTGGAGAATGTGTCACAAAAAAACAGTGTTACTTTTTGTCACAAAAAAACAGTGTTATTTTTTTGGGTTTTCAGTTATGCCAATTTTTTGCTTTTCTGTATTTTTTACTAAAAATCAGCGGGAAAAGAAACATTTCAATAATTTCAGTGAATATTACTTTTTAGAATTTTTAGAACATTTGAATTCTGTAGATGTCTAAATTACGAGGATTATTCAAAAAAATTTGAAAAAAGTTGGGTCGGGGAACTTTTAAAAAATTGAATACTGTAAATCCTGTAATATAAAAATTCCCAGATTTTAACCCTATTTATCTCGGTTACTGTAAGAGATATCAAAAAGTGATCAACTGACAAAACATTTTTGATTTTTTGATAAACTTTTTGTTAATTGATCACTTTTTGATATCTCCAGGAACCGAGATGAATTAACTCAAAGTTAAAAGTGTGGACTAGTGTCGGTAGCCCTAACTTTGACCTAATTTATCTCGGTTTCTGTGAAAGATATCAAAAAGTAATTGTCTAATGAAAATGAAATGCTTATCATAATATCACTAACATTAAATCAGTTGATCACTTTTAGATATCTATTACATAAACCGAAATAAATTGCCTCAAACTTAGTGGGCACTTCTATTAGAGGTTCCACGGTTCACCACAACGGTGGGTAATACCCTCCCATCATATGTATTAGTTTAGAAAAACATCTAAATTTAAAACAACTGAATTTAGCAAGATTAAACGTATTAGAACTTTTGAATTTTTCAAATCGACAAAAACCACCAAAATTTCTCATGAAAAAAATGCAGCGACTTTAGCACATGACCCAAAAAAAAAGACTGTGCAGCAGTTGTAACATTACTATAACAATTTGTAAGTGGTAGTACGTGACAGTCACTAGTCATACTTCTGTCAAAACGACAGAGGGCAAATGAGATAAGAGACAGAGTGAG</canonical>
            <polymorphic>ATGAATCTGCCTACTTTTTGTGAGTTTTTGCATGCTATTTTTTTGGAGATTTTGGAGAATGTGTCACAAAAAAACAGTGTTACTTTTTGTCACAAAAAAACAGTGTTATTTTTTTGGGTTTTCAGTTATGCCAATTTTTTGCTTTTCTGTATTTTTTACTAAAAATCAGCGGGAAAAGAAACATTTCAATAATTTCAGTGAATATTACTTTTTAGAATTTTTAGAACATTTGAATTCTGTAGATGTCTAAATTACGAGGATTATTCAAAAAAATTTGAAAAAAGTTGGGTCGGGGAACTTTTAAAAAATTGAATACTGTAAATCCTGTAATATAAAAATTCCCAGATTTTAACCCTATTTATCTCGGTTACTGTAAGAGATATCAAAAAGTGATCAACTGACAAAACATTTTTGATTTTTTGATAAACTTTTTGTTAATTGATCACTTTTTGATATCTCCAGGAACCGAGATGAATTAACTCAAAGTTAAAAGTGTGGAYTAGTGTCGGTAGCCCTAACTTTGACCTAATTTATCTCGGTTTCTGTGAAAGATATCAAAAAGTAATTGTCTAATGAAAATGAAATGCTTATCATAATATCACTAACATTAAATCAGTTGATCACTTTTAGATATCTATTACATAAACCGAAATAAATTGCCTCAAACTTAGTGGGCACTTCTATTAGAGGTTCCACGGTTCACCACAACGGTGGGTAATACCCTCCCATCATATGTATTAGTTTAGAAAAACATCTAAATTTAAAACAACTGAATTTAGCAAGATTAAACGTATTAGAACTTTTGAATTTTTCAAATCGACAAAAACCACCAAAATTTCTCATGAAAAAAATGCAGCGACTTTAGCACATGACCCAAAAAAAAAGACTGTGCAGCAGTTGTAACATTACTATAACAATTTGTAAGTGGTAGTACGTGACAGTCACTAGTCATACTTCTGTCAAAACGACAGAGGGCAAATGAGATAAGAGACAGAGTGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACTAGT</site>
                <isoschizomers>
                    <enzyme>AhlI</enzyme>
                    <enzyme>BcuI</enzyme>
                    <enzyme>SpeI</enzyme>
                </isoschizomers>
                <canonical_bands>499 445 56</canonical_bands>
                <polymorphic_bands>944 56</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 445 55</canonical_bands>
                <polymorphic_bands>945 55</polymorphic_bands>
            </assay>
            <assay>
                <site>GACNNNNGTC</site>
                <isoschizomers>
                    <enzyme>BoxI</enzyme>
                    <enzyme>BstPAI</enzyme>
                    <enzyme>PshAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>497 300 203</canonical_bands>
                <polymorphic_bands>700 300</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTAAATTACGAGGATTATTCAAA</pcr_primer_p1>
		<pcr_primer_p2>AATACATATGATGGGAGGGTATT</pcr_primer_p2>
		<pcr_amplicon_size>494</pcr_amplicon_size>
		<canonical_amplicon>TCTAAATTACGAGGATTATTCAAAAAAATTTGAAAAAAGTTGGGTCGGGGAACTTTTAAAAAATTGAATACTGTAAATCCTGTAATATAAAAATTCCCAGATTTTAACCCTATTTATCTCGGTTACTGTAAGAGATATCAAAAAGTGATCAACTGACAAAACATTTTTGATTTTTTGATAAACTTTTTGTTAATTGATCACTTTTTGATATCTCCAGGAACCGAGATGAATTAACTCAAAGTTAAAAGTGTGGACTAGTGTCGGTAGCCCTAACTTTGACCTAATTTATCTCGGTTTCTGTGAAAGATATCAAAAAGTAATTGTCTAATGAAAATGAAATGCTTATCATAATATCACTAACATTAAATCAGTTGATCACTTTTAGATATCTATTACATAAACCGAAATAAATTGCCTCAAACTTAGTGGGCACTTCTATTAGAGGTTCCACGGTTCACCACAACGGTGGGTAATACCCTCCCATCATATGTATT</canonical_amplicon>
		<polymorphic_amplicon>TCTAAATTACGAGGATTATTCAAAAAAATTTGAAAAAAGTTGGGTCGGGGAACTTTTAAAAAATTGAATACTGTAAATCCTGTAATATAAAAATTCCCAGATTTTAACCCTATTTATCTCGGTTACTGTAAGAGATATCAAAAAGTGATCAACTGACAAAACATTTTTGATTTTTTGATAAACTTTTTGTTAATTGATCACTTTTTGATATCTCCAGGAACCGAGATGAATTAACTCAAAGTTAAAAGTGTGGAYTAGTGTCGGTAGCCCTAACTTTGACCTAATTTATCTCGGTTTCTGTGAAAGATATCAAAAAGTAATTGTCTAATGAAAATGAAATGCTTATCATAATATCACTAACATTAAATCAGTTGATCACTTTTAGATATCTATTACATAAACCGAAATAAATTGCCTCAAACTTAGTGGGCACTTCTATTAGAGGTTCCACGGTTCACCACAACGGTGGGTAATACCCTCCCATCATATGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31646</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>43537</contig_pos>
        <strand></strand>
        <context>ttagatatct[A/G]ttacataaac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTATCATAATATCACTAACATTAAATCAGTTGATCACTTTTAGATATCT</left_flank>
        <right_flank>TTACATAAACCGAAATAAATTGCCTCAAACTTAGTGGGCACTTCTATTAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGCTTTTCTGTATTTTTTACTAAAAATCAGCGGGAAAAGAAACATTTCAATAATTTCAGTGAATATTACTTTTTAGAATTTTTAGAACATTTGAATTCTGTAGATGTCTAAATTACGAGGATTATTCAAAAAAATTTGAAAAAAGTTGGGTCGGGGAACTTTTAAAAAATTGAATACTGTAAATCCTGTAATATAAAAATTCCCAGATTTTAACCCTATTTATCTCGGTTACTGTAAGAGATATCAAAAAGTGATCAACTGACAAAACATTTTTGATTTTTTGATAAACTTTTTGTTAATTGATCACTTTTTGATATCTCCAGGAACCGAGATGAATTAACTCAAAGTTAAAAGTGTGGACTAGTGTCGGTAGCCCTAACTTTGACCTAATTTATCTCGGTTTCTGTGAAAGATATCAAAAAGTAATTGTCTAATGAAAATGAAATGCTTATCATAATATCACTAACATTAAATCAGTTGATCACTTTTAGATATCTATTACATAAACCGAAATAAATTGCCTCAAACTTAGTGGGCACTTCTATTAGAGGTTCCACGGTTCACCACAACGGTGGGTAATACCCTCCCATCATATGTATTAGTTTAGAAAAACATCTAAATTTAAAACAACTGAATTTAGCAAGATTAAACGTATTAGAACTTTTGAATTTTTCAAATCGACAAAAACCACCAAAATTTCTCATGAAAAAAATGCAGCGACTTTAGCACATGACCCAAAAAAAAAGACTGTGCAGCAGTTGTAACATTACTATAACAATTTGTAAGTGGTAGTACGTGACAGTCACTAGTCATACTTCTGTCAAAACGACAGAGGGCAAATGAGATAAGAGACAGAGTGAGAGAGTGTGGGAAATCGAGGAGAATTAGAGAAAGAAAGAATCAGAGGGAAAGACAAATAATCGAAGAAACAGGCAAGGGTGCCCCGGCACGCTAACACAATCGGTCATTTATTATTAGACCTGTTTTTTTTTCGCTTT</canonical>
            <polymorphic>TTTGCTTTTCTGTATTTTTTACTAAAAATCAGCGGGAAAAGAAACATTTCAATAATTTCAGTGAATATTACTTTTTAGAATTTTTAGAACATTTGAATTCTGTAGATGTCTAAATTACGAGGATTATTCAAAAAAATTTGAAAAAAGTTGGGTCGGGGAACTTTTAAAAAATTGAATACTGTAAATCCTGTAATATAAAAATTCCCAGATTTTAACCCTATTTATCTCGGTTACTGTAAGAGATATCAAAAAGTGATCAACTGACAAAACATTTTTGATTTTTTGATAAACTTTTTGTTAATTGATCACTTTTTGATATCTCCAGGAACCGAGATGAATTAACTCAAAGTTAAAAGTGTGGACTAGTGTCGGTAGCCCTAACTTTGACCTAATTTATCTCGGTTTCTGTGAAAGATATCAAAAAGTAATTGTCTAATGAAAATGAAATGCTTATCATAATATCACTAACATTAAATCAGTTGATCACTTTTAGATATCTRTTACATAAACCGAAATAAATTGCCTCAAACTTAGTGGGCACTTCTATTAGAGGTTCCACGGTTCACCACAACGGTGGGTAATACCCTCCCATCATATGTATTAGTTTAGAAAAACATCTAAATTTAAAACAACTGAATTTAGCAAGATTAAACGTATTAGAACTTTTGAATTTTTCAAATCGACAAAAACCACCAAAATTTCTCATGAAAAAAATGCAGCGACTTTAGCACATGACCCAAAAAAAAAGACTGTGCAGCAGTTGTAACATTACTATAACAATTTGTAAGTGGTAGTACGTGACAGTCACTAGTCATACTTCTGTCAAAACGACAGAGGGCAAATGAGATAAGAGACAGAGTGAGAGAGTGTGGGAAATCGAGGAGAATTAGAGAAAGAAAGAATCAGAGGGAAAGACAAATAATCGAAGAAACAGGCAAGGGTGCCCCGGCACGCTAACACAATCGGTCATTTATTATTAGACCTGTTTTTTTTTCGCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAAATTACGAGGATTATTCAAA</pcr_primer_p1>
		<pcr_primer_p2>AATACATATGATGGGAGGGTATT</pcr_primer_p2>
		<pcr_amplicon_size>494</pcr_amplicon_size>
		<canonical_amplicon>TCTAAATTACGAGGATTATTCAAAAAAATTTGAAAAAAGTTGGGTCGGGGAACTTTTAAAAAATTGAATACTGTAAATCCTGTAATATAAAAATTCCCAGATTTTAACCCTATTTATCTCGGTTACTGTAAGAGATATCAAAAAGTGATCAACTGACAAAACATTTTTGATTTTTTGATAAACTTTTTGTTAATTGATCACTTTTTGATATCTCCAGGAACCGAGATGAATTAACTCAAAGTTAAAAGTGTGGACTAGTGTCGGTAGCCCTAACTTTGACCTAATTTATCTCGGTTTCTGTGAAAGATATCAAAAAGTAATTGTCTAATGAAAATGAAATGCTTATCATAATATCACTAACATTAAATCAGTTGATCACTTTTAGATATCTATTACATAAACCGAAATAAATTGCCTCAAACTTAGTGGGCACTTCTATTAGAGGTTCCACGGTTCACCACAACGGTGGGTAATACCCTCCCATCATATGTATT</canonical_amplicon>
		<polymorphic_amplicon>TCTAAATTACGAGGATTATTCAAAAAAATTTGAAAAAAGTTGGGTCGGGGAACTTTTAAAAAATTGAATACTGTAAATCCTGTAATATAAAAATTCCCAGATTTTAACCCTATTTATCTCGGTTACTGTAAGAGATATCAAAAAGTGATCAACTGACAAAACATTTTTGATTTTTTGATAAACTTTTTGTTAATTGATCACTTTTTGATATCTCCAGGAACCGAGATGAATTAACTCAAAGTTAAAAGTGTGGACTAGTGTCGGTAGCCCTAACTTTGACCTAATTTATCTCGGTTTCTGTGAAAGATATCAAAAAGTAATTGTCTAATGAAAATGAAATGCTTATCATAATATCACTAACATTAAATCAGTTGATCACTTTTAGATATCTRTTACATAAACCGAAATAAATTGCCTCAAACTTAGTGGGCACTTCTATTAGAGGTTCCACGGTTCACCACAACGGTGGGTAATACCCTCCCATCATATGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31647</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>43669</contig_pos>
        <strand></strand>
        <context>ATTTAAAACA[A/T]CTGAATTTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TACCCTCCCATCATATGTATTAGTTTAGAAAAACATCTAAATTTAAAACA</left_flank>
        <right_flank>CTGAATTTAGCAAGATTAAACGTATTAGAACTTTTGAATTTTTCAAATCG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTTGAAAAAAGTTGGGTCGGGGAACTTTTAAAAAATTGAATACTGTAAATCCTGTAATATAAAAATTCCCAGATTTTAACCCTATTTATCTCGGTTACTGTAAGAGATATCAAAAAGTGATCAACTGACAAAACATTTTTGATTTTTTGATAAACTTTTTGTTAATTGATCACTTTTTGATATCTCCAGGAACCGAGATGAATTAACTCAAAGTTAAAAGTGTGGACTAGTGTCGGTAGCCCTAACTTTGACCTAATTTATCTCGGTTTCTGTGAAAGATATCAAAAAGTAATTGTCTAATGAAAATGAAATGCTTATCATAATATCACTAACATTAAATCAGTTGATCACTTTTAGATATCTATTACATAAACCGAAATAAATTGCCTCAAACTTAGTGGGCACTTCTATTAGAGGTTCCACGGTTCACCACAACGGTGGGTAATACCCTCCCATCATATGTATTAGTTTAGAAAAACATCTAAATTTAAAACAACTGAATTTAGCAAGATTAAACGTATTAGAACTTTTGAATTTTTCAAATCGACAAAAACCACCAAAATTTCTCATGAAAAAAATGCAGCGACTTTAGCACATGACCCAAAAAAAAAGACTGTGCAGCAGTTGTAACATTACTATAACAATTTGTAAGTGGTAGTACGTGACAGTCACTAGTCATACTTCTGTCAAAACGACAGAGGGCAAATGAGATAAGAGACAGAGTGAGAGAGTGTGGGAAATCGAGGAGAATTAGAGAAAGAAAGAATCAGAGGGAAAGACAAATAATCGAAGAAACAGGCAAGGGTGCCCCGGCACGCTAACACAATCGGTCATTTATTATTAGACCTGTTTTTTTTTCGCTTTTCGATTTTTTTTTCTTTTTTTTTTAAATCCAATTCTAATGGAAAGTTCCATGAATACCTCCACTGAGAACTTAATTGACAATGAGTGAGTTTTTGTTGTTTTTGAAGAAAATCATAAATTTAAAAAATTTAG</canonical>
            <polymorphic>AAAATTTGAAAAAAGTTGGGTCGGGGAACTTTTAAAAAATTGAATACTGTAAATCCTGTAATATAAAAATTCCCAGATTTTAACCCTATTTATCTCGGTTACTGTAAGAGATATCAAAAAGTGATCAACTGACAAAACATTTTTGATTTTTTGATAAACTTTTTGTTAATTGATCACTTTTTGATATCTCCAGGAACCGAGATGAATTAACTCAAAGTTAAAAGTGTGGACTAGTGTCGGTAGCCCTAACTTTGACCTAATTTATCTCGGTTTCTGTGAAAGATATCAAAAAGTAATTGTCTAATGAAAATGAAATGCTTATCATAATATCACTAACATTAAATCAGTTGATCACTTTTAGATATCTATTACATAAACCGAAATAAATTGCCTCAAACTTAGTGGGCACTTCTATTAGAGGTTCCACGGTTCACCACAACGGTGGGTAATACCCTCCCATCATATGTATTAGTTTAGAAAAACATCTAAATTTAAAACAWCTGAATTTAGCAAGATTAAACGTATTAGAACTTTTGAATTTTTCAAATCGACAAAAACCACCAAAATTTCTCATGAAAAAAATGCAGCGACTTTAGCACATGACCCAAAAAAAAAGACTGTGCAGCAGTTGTAACATTACTATAACAATTTGTAAGTGGTAGTACGTGACAGTCACTAGTCATACTTCTGTCAAAACGACAGAGGGCAAATGAGATAAGAGACAGAGTGAGAGAGTGTGGGAAATCGAGGAGAATTAGAGAAAGAAAGAATCAGAGGGAAAGACAAATAATCGAAGAAACAGGCAAGGGTGCCCCGGCACGCTAACACAATCGGTCATTTATTATTAGACCTGTTTTTTTTTCGCTTTTCGATTTTTTTTTCTTTTTTTTTTAAATCCAATTCTAATGGAAAGTTCCATGAATACCTCCACTGAGAACTTAATTGACAATGAGTGAGTTTTTGTTGTTTTTGAAGAAAATCATAAATTTAAAAAATTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTAGATGTCTAAATTACGAGGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGTCGATTTGAAAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>590</pcr_amplicon_size>
		<canonical_amplicon>AACTGAATTTAGCAAGATTAAACGTATTAGAACTTTTGAATTTTTCAAATCGACAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AWCTGAATTTAGCAAGATTAAACGTATTAGAACTTTTGAATTTTTCAAATCGACAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31648</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>43981</contig_pos>
        <strand>+</strand>
        <context>GGCAAGGGTG[C/T]CCCGGCACGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGAAAGAATCAGAGGGAAAGACAAATAATCGAAGAAACAGGCAAGGGTG</left_flank>
        <right_flank>CCCGGCACGCTAACACAATCGGTCATTTATTATTAGACCTGTTTTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATGCTTATCATAATATCACTAACATTAAATCAGTTGATCACTTTTAGATATCTATTACATAAACCGAAATAAATTGCCTCAAACTTAGTGGGCACTTCTATTAGAGGTTCCACGGTTCACCACAACGGTGGGTAATACCCTCCCATCATATGTATTAGTTTAGAAAAACATCTAAATTTAAAACAACTGAATTTAGCAAGATTAAACGTATTAGAACTTTTGAATTTTTCAAATCGACAAAAACCACCAAAATTTCTCATGAAAAAAATGCAGCGACTTTAGCACATGACCCAAAAAAAAAGACTGTGCAGCAGTTGTAACATTACTATAACAATTTGTAAGTGGTAGTACGTGACAGTCACTAGTCATACTTCTGTCAAAACGACAGAGGGCAAATGAGATAAGAGACAGAGTGAGAGAGTGTGGGAAATCGAGGAGAATTAGAGAAAGAAAGAATCAGAGGGAAAGACAAATAATCGAAGAAACAGGCAAGGGTGCCCCGGCACGCTAACACAATCGGTCATTTATTATTAGACCTGTTTTTTTTTCGCTTTTCGATTTTTTTTTCTTTTTTTTTTAAATCCAATTCTAATGGAAAGTTCCATGAATACCTCCACTGAGAACTTAATTGACAATGAGTGAGTTTTTGTTGTTTTTGAAGAAAATCATAAATTTAAAAAATTTAGCTATTTAAGGAAAGAAAATGTTGAAAAATCCTTTTAAAATAGACTCACAACACTTCAAATTTTTGACAGGAAGTTGGAAATTCAGAACTTCAAAATTCAGAAATTCAGAACTCCAAAAAATCAAAAATTAAAAAATTCAGAAATTCGGAAAATCAGAACTTCAATAATTCAGAAATTCAGAAATTCCTAAATTCAGAAATTCAAAATATTCCAAAAAATCAGATATTCTGAAATTCCGAAGATTTCCAAAAGATTCTAAAAAACTCAAAAAAAAACTCAAAAAATTCTGAAATATCAGAAATTCGGAAAATC</canonical>
            <polymorphic>AAATGCTTATCATAATATCACTAACATTAAATCAGTTGATCACTTTTAGATATCTATTACATAAACCGAAATAAATTGCCTCAAACTTAGTGGGCACTTCTATTAGAGGTTCCACGGTTCACCACAACGGTGGGTAATACCCTCCCATCATATGTATTAGTTTAGAAAAACATCTAAATTTAAAACAACTGAATTTAGCAAGATTAAACGTATTAGAACTTTTGAATTTTTCAAATCGACAAAAACCACCAAAATTTCTCATGAAAAAAATGCAGCGACTTTAGCACATGACCCAAAAAAAAAGACTGTGCAGCAGTTGTAACATTACTATAACAATTTGTAAGTGGTAGTACGTGACAGTCACTAGTCATACTTCTGTCAAAACGACAGAGGGCAAATGAGATAAGAGACAGAGTGAGAGAGTGTGGGAAATCGAGGAGAATTAGAGAAAGAAAGAATCAGAGGGAAAGACAAATAATCGAAGAAACAGGCAAGGGTGYCCCGGCACGCTAACACAATCGGTCATTTATTATTAGACCTGTTTTTTTTTCGCTTTTCGATTTTTTTTTCTTTTTTTTTTAAATCCAATTCTAATGGAAAGTTCCATGAATACCTCCACTGAGAACTTAATTGACAATGAGTGAGTTTTTGTTGTTTTTGAAGAAAATCATAAATTTAAAAAATTTAGCTATTTAAGGAAAGAAAATGTTGAAAAATCCTTTTAAAATAGACTCACAACACTTCAAATTTTTGACAGGAAGTTGGAAATTCAGAACTTCAAAATTCAGAAATTCAGAACTCCAAAAAATCAAAAATTAAAAAATTCAGAAATTCGGAAAATCAGAACTTCAATAATTCAGAAATTCAGAAATTCCTAAATTCAGAAATTCAAAATATTCCAAAAAATCAGATATTCTGAAATTCCGAAGATTTCCAAAAGATTCTAAAAAACTCAAAAAAAAACTCAAAAAATTCTGAAATATCAGAAATTCGGAAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>499 405 96</canonical_bands>
                <polymorphic_bands>904 96</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>499 405 96</canonical_bands>
                <polymorphic_bands>904 96</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>500 388 112</canonical_bands>
                <polymorphic_bands>888 112</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 388 110</canonical_bands>
                <polymorphic_bands>890 110</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAAATGAGATAAGAGACAGAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTCAATTAAGTTCTCAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GCAAATGAGATAAGAGACAGAGTGAGAGAGTGTGGGAAATCGAGGAGAATTAGAGAAAGAAAGAATCAGAGGGAAAGACAAATAATCGAAGAAACAGGCAAGGGTGCCCCGGCACGCTAACACAATCGGTCATTTATTATTAGACCTGTTTTTTTTTCGCTTTTCGATTTTTTTTTCTTTTTTTTTTAAATCCAATTCTAATGGAAAGTTCCATGAATACCTCCACTGAGAACTTAATTGACAAT</canonical_amplicon>
		<polymorphic_amplicon>GCAAATGAGATAAGAGACAGAGTGAGAGAGTGTGGGAAATCGAGGAGAATTAGAGAAAGAAAGAATCAGAGGGAAAGACAAATAATCGAAGAAACAGGCAAGGGTGYCCCGGCACGCTAACACAATCGGTCATTTATTATTAGACCTGTTTTTTTTTCGCTTTTCGATTTTTTTTTCTTTTTTTTTTAAATCCAATTCTAATGGAAAGTTCCATGAATACCTCCACTGAGAACTTAATTGACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31649</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>44203</contig_pos>
        <strand>+</strand>
        <context>AAAAATCCTT[A/T]TAAAATAGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATTTAAAAAATTTAGCTATTTAAGGAAAGAAAATGTTGAAAAATCCTT</left_flank>
        <right_flank>TAAAATAGACTCACAACACTTCAAATTTTTGACAGGAAGTTGGAAATTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAATTTTTCAAATCGACAAAAACCACCAAAATTTCTCATGAAAAAAATGCAGCGACTTTAGCACATGACCCAAAAAAAAAGACTGTGCAGCAGTTGTAACATTACTATAACAATTTGTAAGTGGTAGTACGTGACAGTCACTAGTCATACTTCTGTCAAAACGACAGAGGGCAAATGAGATAAGAGACAGAGTGAGAGAGTGTGGGAAATCGAGGAGAATTAGAGAAAGAAAGAATCAGAGGGAAAGACAAATAATCGAAGAAACAGGCAAGGGTGCCCCGGCACGCTAACACAATCGGTCATTTATTATTAGACCTGTTTTTTTTTCGCTTTTCGATTTTTTTTTCTTTTTTTTTTAAATCCAATTCTAATGGAAAGTTCCATGAATACCTCCACTGAGAACTTAATTGACAATGAGTGAGTTTTTGTTGTTTTTGAAGAAAATCATAAATTTAAAAAATTTAGCTATTTAAGGAAAGAAAATGTTGAAAAATCCTTTTAAAATAGACTCACAACACTTCAAATTTTTGACAGGAAGTTGGAAATTCAGAACTTCAAAATTCAGAAATTCAGAACTCCAAAAAATCAAAAATTAAAAAATTCAGAAATTCGGAAAATCAGAACTTCAATAATTCAGAAATTCAGAAATTCCTAAATTCAGAAATTCAAAATATTCCAAAAAATCAGATATTCTGAAATTCCGAAGATTTCCAAAAGATTCTAAAAAACTCAAAAAAAAACTCAAAAAATTCTGAAATATCAGAAATTCGGAAAATCAGAACTTCAAAAATTCCGAAATTCAAAAATTCAAAAATTCAAAAATTCGGAAGTTCATAAATCCAAGAAATTCAGAAATTAAGAAGCTTTTTTTGAAAAAGTCTTTCCCTAAAAAATATAAAATTTGTCACCTCCACAAAAAATTTAATTTTTTGACATGAAATCCAACACCTATGTACACATATATTCTGTTTCCGAGAGACCCTCTTTTTTTTGTTTCAG</canonical>
            <polymorphic>TGAATTTTTCAAATCGACAAAAACCACCAAAATTTCTCATGAAAAAAATGCAGCGACTTTAGCACATGACCCAAAAAAAAAGACTGTGCAGCAGTTGTAACATTACTATAACAATTTGTAAGTGGTAGTACGTGACAGTCACTAGTCATACTTCTGTCAAAACGACAGAGGGCAAATGAGATAAGAGACAGAGTGAGAGAGTGTGGGAAATCGAGGAGAATTAGAGAAAGAAAGAATCAGAGGGAAAGACAAATAATCGAAGAAACAGGCAAGGGTGCCCCGGCACGCTAACACAATCGGTCATTTATTATTAGACCTGTTTTTTTTTCGCTTTTCGATTTTTTTTTCTTTTTTTTTTAAATCCAATTCTAATGGAAAGTTCCATGAATACCTCCACTGAGAACTTAATTGACAATGAGTGAGTTTTTGTTGTTTTTGAAGAAAATCATAAATTTAAAAAATTTAGCTATTTAAGGAAAGAAAATGTTGAAAAATCCTTWTAAAATAGACTCACAACACTTCAAATTTTTGACAGGAAGTTGGAAATTCAGAACTTCAAAATTCAGAAATTCAGAACTCCAAAAAATCAAAAATTAAAAAATTCAGAAATTCGGAAAATCAGAACTTCAATAATTCAGAAATTCAGAAATTCCTAAATTCAGAAATTCAAAATATTCCAAAAAATCAGATATTCTGAAATTCCGAAGATTTCCAAAAGATTCTAAAAAACTCAAAAAAAAACTCAAAAAATTCTGAAATATCAGAAATTCGGAAAATCAGAACTTCAAAAATTCCGAAATTCAAAAATTCAAAAATTCAAAAATTCGGAAGTTCATAAATCCAAGAAATTCAGAAATTAAGAAGCTTTTTTTGAAAAAGTCTTTCCCTAAAAAATATAAAATTTGTCACCTCCACAAAAAATTTAATTTTTTGACATGAAATCCAACACCTATGTACACATATATTCTGTTTCCGAGAGACCCTCTTTTTTTTGTTTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 358 97 46</canonical_bands>
                <polymorphic_bands>545 358 97</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>357 263 94 77 66 49 48 29 17</canonical_bands>
                <polymorphic_bands>357 263 123 77 66 49 48 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGTTTTTGAAGAAAATCATAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTGTGGAGGTGACAAATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>489</pcr_amplicon_size>
		<canonical_amplicon>GTTGTTTTTGAAGAAAATCATAAATTTAAAAAATTTAGCTATTTAAGGAAAGAAAATGTTGAAAAATCCTTTTAAAATAGACTCACAACACTTCAAATTTTTGACAGGAAGTTGGAAATTCAGAACTTCAAAATTCAGAAATTCAGAACTCCAAAAAATCAAAAATTAAAAAATTCAGAAATTCGGAAAATCAGAACTTCAATAATTCAGAAATTCAGAAATTCCTAAATTCAGAAATTCAAAATATTCCAAAAAATCAGATATTCTGAAATTCCGAAGATTTCCAAAAGATTCTAAAAAACTCAAAAAAAAACTCAAAAAATTCTGAAATATCAGAAATTCGGAAAATCAGAACTTCAAAAATTCCGAAATTCAAAAATTCAAAAATTCAAAAATTCGGAAGTTCATAAATCCAAGAAATTCAGAAATTAAGAAGCTTTTTTTGAAAAAGTCTTTCCCTAAAAAATATAAAATTTGTCACCTCCACAA</canonical_amplicon>
		<polymorphic_amplicon>GTTGTTTTTGAAGAAAATCATAAATTTAAAAAATTTAGCTATTTAAGGAAAGAAAATGTTGAAAAATCCTTWTAAAATAGACTCACAACACTTCAAATTTTTGACAGGAAGTTGGAAATTCAGAACTTCAAAATTCAGAAATTCAGAACTCCAAAAAATCAAAAATTAAAAAATTCAGAAATTCGGAAAATCAGAACTTCAATAATTCAGAAATTCAGAAATTCCTAAATTCAGAAATTCAAAATATTCCAAAAAATCAGATATTCTGAAATTCCGAAGATTTCCAAAAGATTCTAAAAAACTCAAAAAAAAACTCAAAAAATTCTGAAATATCAGAAATTCGGAAAATCAGAACTTCAAAAATTCCGAAATTCAAAAATTCAAAAATTCAAAAATTCGGAAGTTCATAAATCCAAGAAATTCAGAAATTAAGAAGCTTTTTTTGAAAAAGTCTTTCCCTAAAAAATATAAAATTTGTCACCTCCACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31650</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>47684</contig_pos>
        <strand>+</strand>
        <context>AAGAATCGCG[A/T]AAAACCTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTAAAAATTGCCAAAATGCTAAAAATCCCTGATAATAGCCAAGAATCGCG</left_flank>
        <right_flank>AAAACCTGAAAATCTTTGAAATCCTAAATTTTGCTAAAAACCGCCGGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGTACGCCAAGAATCTCAAGCAGTTTATCGATCAAAAGACAACGGTTGGGACCACGTGCCAGGAGGCGTTCGCCCTGTCTGTGAAGTTCACTGATCAGTTCTCGGCTCCACAAACTATCATCAACTTGCCAGGAAGTGCCACGTGTATCGAGTCGACGGACCATCCGGTGGATGTGGAAGAGTTGGATACTGCGACCGCAGTTAATATTGAGAGAGGTCAGAAATTCAGAAATTCAAAAATCTGGAAATTCCAAATTTCAAAAAATTAAAAAAAAAATCAAAAATGCGAAATTTTTGAAATTTTGAAATTTTGAAACTTCTGAATTCCAAAAACCAAAAAACTAGAAAAAATTCCAAACATTGTGATTTTGATATTCTGATAATCTTAAGATTTGAAGCTCTGAATTTTAGATATTCGGAAATCCTGAAATTCTGAAATTCCAAAAGTCTAAAAATTGCCAAAATGCTAAAAATCCCTGATAATAGCCAAGAATCGCGAAAAACCTGAAAATCTTTGAAATCCTAAATTTTGCTAAAAACCGCCGGAAGTTCCAAAACCGCCAAAAATCGCAGAAAACCTAAAAATCGCCAAAATCCAATAGTTTCTTCAAAAATTTCAGAAACTGCGAAATTTCCAAATTTTCGGAAACTGCCAAAAATTCGGAAAATTGCCAAAAACCTGACAATCGCTAAAAATCATAGAAATCGCGAAAAATCAAAAATTCCGAAAATTCGAAACTTTCAAAATTCAAAAATTCAATAAAATTCAATATATTCAAAATTTCCAGATGTGGTCACCGCCGCCCCCATTGGCTCATTGATGGGATTCGTTGAGGAGTACAAGAAGGGACAAAAGACCAAGGGATGCTGGCTGTCGAACTACATTTGCGGAGGACCAGCTGCTGATAAGGAGAAGCCATCGATGCGATCCCGTCGCTCGTCTCGCTCATCGAATCGTTCGGCCAAGAGTCAGACAAGCTGCCGTTCGCAAGCCCTTAA</canonical>
            <polymorphic>GTGTACGCCAAGAATCTCAAGCAGTTTATCGATCAAAAGACAACGGTTGGGACCACGTGCCAGGAGGCGTTCGCCCTGTCTGTGAAGTTCACTGATCAGTTCTCGGCTCCACAAACTATCATCAACTTGCCAGGAAGTGCCACGTGTATCGAGTCGACGGACCATCCGGTGGATGTGGAAGAGTTGGATACTGCGACCGCAGTTAATATTGAGAGAGGTCAGAAATTCAGAAATTCAAAAATCTGGAAATTCCAAATTTCAAAAAATTAAAAAAAAAATCAAAAATGCGAAATTTTTGAAATTTTGAAATTTTGAAACTTCTGAATTCCAAAAACCAAAAAACTAGAAAAAATTCCAAACATTGTGATTTTGATATTCTGATAATCTTAAGATTTGAAGCTCTGAATTTTAGATATTCGGAAATCCTGAAATTCTGAAATTCCAAAAGTCTAAAAATTGCCAAAATGCTAAAAATCCCTGATAATAGCCAAGAATCGCGWAAAACCTGAAAATCTTTGAAATCCTAAATTTTGCTAAAAACCGCCGGAAGTTCCAAAACCGCCAAAAATCGCAGAAAACCTAAAAATCGCCAAAATCCAATAGTTTCTTCAAAAATTTCAGAAACTGCGAAATTTCCAAATTTTCGGAAACTGCCAAAAATTCGGAAAATTGCCAAAAACCTGACAATCGCTAAAAATCATAGAAATCGCGAAAAATCAAAAATTCCGAAAATTCGAAACTTTCAAAATTCAAAAATTCAATAAAATTCAATATATTCAAAATTTCCAGATGTGGTCACCGCCGCCCCCATTGGCTCATTGATGGGATTCGTTGAGGAGTACAAGAAGGGACAAAAGACCAAGGGATGCTGGCTGTCGAACTACATTTGCGGAGGACCAGCTGCTGATAAGGAGAAGCCATCGATGCGATCCCGTCGCTCGTCTCGCTCATCGAATCGTTCGGCCAAGAGTCAGACAAGCTGCCGTTCGCAAGCCCTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGCGA</site>
                <isoschizomers>
                    <enzyme>Bsp68I</enzyme>
                    <enzyme>NruI</enzyme>
                </isoschizomers>
                <canonical_bands>497 291 212</canonical_bands>
                <polymorphic_bands>709 291</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>243 214 212 182 78 71</canonical_bands>
                <polymorphic_bands>283 243 214 182 78</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGCAGTTAATATTGAGAGAGG</pcr_primer_p1>
		<pcr_primer_p2>TAGGTTTTCTGCGATTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>385</pcr_amplicon_size>
		<canonical_amplicon>CGCAGTTAATATTGAGAGAGGTCAGAAATTCAGAAATTCAAAAATCTGGAAATTCCAAATTTCAAAAAATTAAAAAAAAAATCAAAAATGCGAAATTTTTGAAATTTTGAAATTTTGAAACTTCTGAATTCCAAAAACCAAAAAACTAGAAAAAATTCCAAACATTGTGATTTTGATATTCTGATAATCTTAAGATTTGAAGCTCTGAATTTTAGATATTCGGAAATCCTGAAATTCTGAAATTCCAAAAGTCTAAAAATTGCCAAAATGCTAAAAATCCCTGATAATAGCCAAGAATCGCGAAAAACCTGAAAATCTTTGAAATCCTAAATTTTGCTAAAAACCGCCGGAAGTTCCAAAACCGCCAAAAATCGCAGAAAACCTA</canonical_amplicon>
		<polymorphic_amplicon>CGCAGTTAATATTGAGAGAGGTCAGAAATTCAGAAATTCAAAAATCTGGAAATTCCAAATTTCAAAAAATTAAAAAAAAAATCAAAAATGCGAAATTTTTGAAATTTTGAAATTTTGAAACTTCTGAATTCCAAAAACCAAAAAACTAGAAAAAATTCCAAACATTGTGATTTTGATATTCTGATAATCTTAAGATTTGAAGCTCTGAATTTTAGATATTCGGAAATCCTGAAATTCTGAAATTCCAAAAGTCTAAAAATTGCCAAAATGCTAAAAATCCCTGATAATAGCCAAGAATCGCGWAAAACCTGAAAATCTTTGAAATCCTAAATTTTGCTAAAAACCGCCGGAAGTTCCAAAACCGCCAAAAATCGCAGAAAACCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31651</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>47716</contig_pos>
        <strand>+</strand>
        <context>TCCTAAATTT[C/T]GCTAAAAACC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATAGCCAAGAATCGCGAAAAACCTGAAAATCTTTGAAATCCTAAATTT</left_flank>
        <right_flank>GCTAAAAACCGCCGGAAGTTCCAAAACCGCCAAAAATCGCAGAAAACCTA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAAGACAACGGTTGGGACCACGTGCCAGGAGGCGTTCGCCCTGTCTGTGAAGTTCACTGATCAGTTCTCGGCTCCACAAACTATCATCAACTTGCCAGGAAGTGCCACGTGTATCGAGTCGACGGACCATCCGGTGGATGTGGAAGAGTTGGATACTGCGACCGCAGTTAATATTGAGAGAGGTCAGAAATTCAGAAATTCAAAAATCTGGAAATTCCAAATTTCAAAAAATTAAAAAAAAAATCAAAAATGCGAAATTTTTGAAATTTTGAAATTTTGAAACTTCTGAATTCCAAAAACCAAAAAACTAGAAAAAATTCCAAACATTGTGATTTTGATATTCTGATAATCTTAAGATTTGAAGCTCTGAATTTTAGATATTCGGAAATCCTGAAATTCTGAAATTCCAAAAGTCTAAAAATTGCCAAAATGCTAAAAATCCCTGATAATAGCCAAGAATCGCGAAAAACCTGAAAATCTTTGAAATCCTAAATTTTGCTAAAAACCGCCGGAAGTTCCAAAACCGCCAAAAATCGCAGAAAACCTAAAAATCGCCAAAATCCAATAGTTTCTTCAAAAATTTCAGAAACTGCGAAATTTCCAAATTTTCGGAAACTGCCAAAAATTCGGAAAATTGCCAAAAACCTGACAATCGCTAAAAATCATAGAAATCGCGAAAAATCAAAAATTCCGAAAATTCGAAACTTTCAAAATTCAAAAATTCAATAAAATTCAATATATTCAAAATTTCCAGATGTGGTCACCGCCGCCCCCATTGGCTCATTGATGGGATTCGTTGAGGAGTACAAGAAGGGACAAAAGACCAAGGGATGCTGGCTGTCGAACTACATTTGCGGAGGACCAGCTGCTGATAAGGAGAAGCCATCGATGCGATCCCGTCGCTCGTCTCGCTCATCGAATCGTTCGGCCAAGAGTCAGACAAGCTGCCGTTCGCAAGCCCTTAAGAAGAATAAGGATGTGAATGTGTGTCTCGAGG</canonical>
            <polymorphic>TCAAAAGACAACGGTTGGGACCACGTGCCAGGAGGCGTTCGCCCTGTCTGTGAAGTTCACTGATCAGTTCTCGGCTCCACAAACTATCATCAACTTGCCAGGAAGTGCCACGTGTATCGAGTCGACGGACCATCCGGTGGATGTGGAAGAGTTGGATACTGCGACCGCAGTTAATATTGAGAGAGGTCAGAAATTCAGAAATTCAAAAATCTGGAAATTCCAAATTTCAAAAAATTAAAAAAAAAATCAAAAATGCGAAATTTTTGAAATTTTGAAATTTTGAAACTTCTGAATTCCAAAAACCAAAAAACTAGAAAAAATTCCAAACATTGTGATTTTGATATTCTGATAATCTTAAGATTTGAAGCTCTGAATTTTAGATATTCGGAAATCCTGAAATTCTGAAATTCCAAAAGTCTAAAAATTGCCAAAATGCTAAAAATCCCTGATAATAGCCAAGAATCGCGAAAAACCTGAAAATCTTTGAAATCCTAAATTTYGCTAAAAACCGCCGGAAGTTCCAAAACCGCCAAAAATCGCAGAAAACCTAAAAATCGCCAAAATCCAATAGTTTCTTCAAAAATTTCAGAAACTGCGAAATTTCCAAATTTTCGGAAACTGCCAAAAATTCGGAAAATTGCCAAAAACCTGACAATCGCTAAAAATCATAGAAATCGCGAAAAATCAAAAATTCCGAAAATTCGAAACTTTCAAAATTCAAAAATTCAATAAAATTCAATATATTCAAAATTTCCAGATGTGGTCACCGCCGCCCCCATTGGCTCATTGATGGGATTCGTTGAGGAGTACAAGAAGGGACAAAAGACCAAGGGATGCTGGCTGTCGAACTACATTTGCGGAGGACCAGCTGCTGATAAGGAGAAGCCATCGATGCGATCCCGTCGCTCGTCTCGCTCATCGAATCGTTCGGCCAAGAGTCAGACAAGCTGCCGTTCGCAAGCCCTTAAGAAGAATAAGGATGTGAATGTGTGTCTCGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCCCTGATAATAGCCAAGA</pcr_primer_p1>
		<pcr_primer_p2>TGATTTTTCGCGATTTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATCCCTGATAATAGCCAAGAATCGCGAAAAACCTGAAAATCTTTGAAATCCTAAATTTTGCTAAAAACCGCCGGAAGTTCCAAAACCGCCAAAAATCGCAGAAAACCTAAAAATCGCCAAAATCCAATAGTTTCTTCAAAAATTTCAGAAACTGCGAAATTTCCAAATTTTCGGAAACTGCCAAAAATTCGGAAAATTGCCAAAAACCTGACAATCGCTAAAAATCATAGAAATCGCGAAAAATCA</canonical_amplicon>
		<polymorphic_amplicon>AATCCCTGATAATAGCCAAGAATCGCGAAAAACCTGAAAATCTTTGAAATCCTAAATTTYGCTAAAAACCGCCGGAAGTTCCAAAACCGCCAAAAATCGCAGAAAACCTAAAAATCGCCAAAATCCAATAGTTTCTTCAAAAATTTCAGAAACTGCGAAATTTCCAAATTTTCGGAAACTGCCAAAAATTCGGAAAATTGCCAAAAACCTGACAATCGCTAAAAATCATAGAAATCGCGAAAAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31652</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>113949</contig_pos>
        <strand></strand>
        <context>CTGTAGAAAG[A/G]AAGGATTACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACTGTAGAATAGACTGGTTATTGTATAATGTAAGAGTTACTGTAGAAAG</left_flank>
        <right_flank>AAGGATTACTGTAGAACGGAAGACTACTATTTGCCACAGTGGCCTAGAAA</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGCAAAAAAACTACAAAAATTTCAAATTGGCTCCCTAAAAATAATAATATCATGTGCCAAAAACACATGACATTTTATTTTCTCACATAAGGAAATGCGAGAATTTCCAGAGTTTTCCTCTAAATTTCCCATAAATCTACCAGATATTATTTTTGTTATTGATTTTAGATTTTGTTTTCAGATTCCTTATTATCGATTTTTTGTTACTTTGAGCTTGAAACCTATCACATGATTTATTTTTCGTAATCAGTTTAAAACTTCTGATCTTCATCTTTTTTGCCTAATCCGATTTTGCTAATTCGAAAACCTTCATGTTTTTTTCAGAACCAAAAATATCATAAAATGAGGAGTACGGCAATACTATTGCTGACGATTCTGCTTGTGTTGAGGATATGTGATTGTGAGTTGGGCTAATCAAATAGTAGGGGTTACTGTAGAATGGGAGGGCTACTGTAGAATAGACTGGTTATTGTATAATGTAAGAGTTACTGTAGAAAGAAAGGATTACTGTAGAACGGAAGACTACTATTTGCCACAGTGGCCTAGAAATTTCCAAAATTTTCCTCGGCCTCGAATGTTTGAAACTATCATTTATGACATCGGTCAGCGGTCACCGTAACTCAGCTGGTACCTGCAAAGGTGGGCCCACAAGTACATCTCCTCTAGGGGTTTACATGAAAGAAATTACGAAAAATAAATAAACAATGTTTCATGTTCCTCCACTCTTAATAACCCCTGAAAATTCAGCCCAAAACATCGAAGTCTCCCGAGAACGCGTTCCAGAAGCAATCCGCTACGCTGAACCATCCACAGCTGGACCAAACGTCGAGCAACACGAATTCGTTCCATTATCTCCAGTAAAAAGACGGGCGGCTCGAGCAGCTCCGATTCCAAAGAAACGAGATGCAATTGTAAAAGAGGTGGAAGAAGAGGAGGACATTGATCCAGCCACTGCCACGATTCCAAGCGACGTCGAGGTTCAGAAAGATACGGTAAGGA</canonical>
            <polymorphic>TAGCAAAAAAACTACAAAAATTTCAAATTGGCTCCCTAAAAATAATAATATCATGTGCCAAAAACACATGACATTTTATTTTCTCACATAAGGAAATGCGAGAATTTCCAGAGTTTTCCTCTAAATTTCCCATAAATCTACCAGATATTATTTTTGTTATTGATTTTAGATTTTGTTTTCAGATTCCTTATTATCGATTTTTTGTTACTTTGAGCTTGAAACCTATCACATGATTTATTTTTCGTAATCAGTTTAAAACTTCTGATCTTCATCTTTTTTGCCTAATCCGATTTTGCTAATTCGAAAACCTTCATGTTTTTTTCAGAACCAAAAATATCATAAAATGAGGAGTACGGCAATACTATTGCTGACGATTCTGCTTGTGTTGAGGATATGTGATTGTGAGTTGGGCTAATCAAATAGTAGGGGTTACTGTAGAATGGGAGGGCTACTGTAGAATAGACTGGTTATTGTATAATGTAAGAGTTACTGTAGAAAGRAAGGATTACTGTAGAACGGAAGACTACTATTTGCCACAGTGGCCTAGAAATTTCCAAAATTTTCCTCGGCCTCGAATGTTTGAAACTATCATTTATGACATCGGTCAGCGGTCACCGTAACTCAGCTGGTACCTGCAAAGGTGGGCCCACAAGTACATCTCCTCTAGGGGTTTACATGAAAGAAATTACGAAAAATAAATAAACAATGTTTCATGTTCCTCCACTCTTAATAACCCCTGAAAATTCAGCCCAAAACATCGAAGTCTCCCGAGAACGCGTTCCAGAAGCAATCCGCTACGCTGAACCATCCACAGCTGGACCAAACGTCGAGCAACACGAATTCGTTCCATTATCTCCAGTAAAAAGACGGGCGGCTCGAGCAGCTCCGATTCCAAAGAAACGAGATGCAATTGTAAAAGAGGTGGAAGAAGAGGAGGACATTGATCCAGCCACTGCCACGATTCCAAGCGACGTCGAGGTTCAGAAAGATACGGTAAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGCTACTGTAGAATAGACTGGT</pcr_primer_p1>
		<pcr_primer_p2>TATTTTTCGTAATTTCTTTCATGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGGCTACTGTAGAATAGACTGGTTATTGTATAATGTAAGAGTTACTGTAGAAAGAAAGGATTACTGTAGAACGGAAGACTACTATTTGCCACAGTGGCCTAGAAATTTCCAAAATTTTCCTCGGCCTCGAATGTTTGAAACTATCATTTATGACATCGGTCAGCGGTCACCGTAACTCAGCTGGTACCTGCAAAGGTGGGCCCACAAGTACATCTCCTCTAGGGGTTTACATGAAAGAAATTACGAAAAATA</canonical_amplicon>
		<polymorphic_amplicon>GGGCTACTGTAGAATAGACTGGTTATTGTATAATGTAAGAGTTACTGTAGAAAGRAAGGATTACTGTAGAACGGAAGACTACTATTTGCCACAGTGGCCTAGAAATTTCCAAAATTTTCCTCGGCCTCGAATGTTTGAAACTATCATTTATGACATCGGTCAGCGGTCACCGTAACTCAGCTGGTACCTGCAAAGGTGGGCCCACAAGTACATCTCCTCTAGGGGTTTACATGAAAGAAATTACGAAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31653</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>113987</contig_pos>
        <strand>+</strand>
        <context>TATTTGCCAC[A/C]GTGGCCTAGM</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TACTGTAGAAAGAAAGGATTACTGTAGAACGGAAGACTACTATTTGCCAC</left_flank>
        <right_flank>GTGGCCTAGAAATTTCCAAAATTTTCCTCGGCCTCGAATGTTTGAAACTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATAATAATATCATGTGCCAAAAACACATGACATTTTATTTTCTCACATAAGGAAATGCGAGAATTTCCAGAGTTTTCCTCTAAATTTCCCATAAATCTACCAGATATTATTTTTGTTATTGATTTTAGATTTTGTTTTCAGATTCCTTATTATCGATTTTTTGTTACTTTGAGCTTGAAACCTATCACATGATTTATTTTTCGTAATCAGTTTAAAACTTCTGATCTTCATCTTTTTTGCCTAATCCGATTTTGCTAATTCGAAAACCTTCATGTTTTTTTCAGAACCAAAAATATCATAAAATGAGGAGTACGGCAATACTATTGCTGACGATTCTGCTTGTGTTGAGGATATGTGATTGTGAGTTGGGCTAATCAAATAGTAGGGGTTACTGTAGAATGGGAGGGCTACTGTAGAATAGACTGGTTATTGTATAATGTAAGAGTTACTGTAGAAAGAAAGGATTACTGTAGAACGGAAGACTACTATTTGCCACAGTGGCCTAGAAATTTCCAAAATTTTCCTCGGCCTCGAATGTTTGAAACTATCATTTATGACATCGGTCAGCGGTCACCGTAACTCAGCTGGTACCTGCAAAGGTGGGCCCACAAGTACATCTCCTCTAGGGGTTTACATGAAAGAAATTACGAAAAATAAATAAACAATGTTTCATGTTCCTCCACTCTTAATAACCCCTGAAAATTCAGCCCAAAACATCGAAGTCTCCCGAGAACGCGTTCCAGAAGCAATCCGCTACGCTGAACCATCCACAGCTGGACCAAACGTCGAGCAACACGAATTCGTTCCATTATCTCCAGTAAAAAGACGGGCGGCTCGAGCAGCTCCGATTCCAAAGAAACGAGATGCAATTGTAAAAGAGGTGGAAGAAGAGGAGGACATTGATCCAGCCACTGCCACGATTCCAAGCGACGTCGAGGTTCAGAAAGATACGGTAAGGATGAGGAATATGAAGATGTTTGCATGGAAGCTTCTCTAA</canonical>
            <polymorphic>AAAATAATAATATCATGTGCCAAAAACACATGACATTTTATTTTCTCACATAAGGAAATGCGAGAATTTCCAGAGTTTTCCTCTAAATTTCCCATAAATCTACCAGATATTATTTTTGTTATTGATTTTAGATTTTGTTTTCAGATTCCTTATTATCGATTTTTTGTTACTTTGAGCTTGAAACCTATCACATGATTTATTTTTCGTAATCAGTTTAAAACTTCTGATCTTCATCTTTTTTGCCTAATCCGATTTTGCTAATTCGAAAACCTTCATGTTTTTTTCAGAACCAAAAATATCATAAAATGAGGAGTACGGCAATACTATTGCTGACGATTCTGCTTGTGTTGAGGATATGTGATTGTGAGTTGGGCTAATCAAATAGTAGGGGTTACTGTAGAATGGGAGGGCTACTGTAGAATAGACTGGTTATTGTATAATGTAAGAGTTACTGTAGAAAGAAAGGATTACTGTAGAACGGAAGACTACTATTTGCCACMGTGGCCTAGAAATTTCCAAAATTTTCCTCGGCCTCGAATGTTTGAAACTATCATTTATGACATCGGTCAGCGGTCACCGTAACTCAGCTGGTACCTGCAAAGGTGGGCCCACAAGTACATCTCCTCTAGGGGTTTACATGAAAGAAATTACGAAAAATAAATAAACAATGTTTCATGTTCCTCCACTCTTAATAACCCCTGAAAATTCAGCCCAAAACATCGAAGTCTCCCGAGAACGCGTTCCAGAAGCAATCCGCTACGCTGAACCATCCACAGCTGGACCAAACGTCGAGCAACACGAATTCGTTCCATTATCTCCAGTAAAAAGACGGGCGGCTCGAGCAGCTCCGATTCCAAAGAAACGAGATGCAATTGTAAAAGAGGTGGAAGAAGAGGAGGACATTGATCCAGCCACTGCCACGATTCCAAGCGACGTCGAGGTTCAGAAAGATACGGTAAGGATGAGGAATATGAAGATGTTTGCATGGAAGCTTCTCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGCTACTGTAGAATAGACTGGT</pcr_primer_p1>
		<pcr_primer_p2>TATTTTTCGTAATTTCTTTCATGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGGCTACTGTAGAATAGACTGGTTATTGTATAATGTAAGAGTTACTGTAGAAAGAAAGGATTACTGTAGAACGGAAGACTACTATTTGCCACAGTGGCCTAGAAATTTCCAAAATTTTCCTCGGCCTCGAATGTTTGAAACTATCATTTATGACATCGGTCAGCGGTCACCGTAACTCAGCTGGTACCTGCAAAGGTGGGCCCACAAGTACATCTCCTCTAGGGGTTTACATGAAAGAAATTACGAAAAATA</canonical_amplicon>
		<polymorphic_amplicon>GGGCTACTGTAGAATAGACTGGTTATTGTATAATGTAAGAGTTACTGTAGAAAGAAAGGATTACTGTAGAACGGAAGACTACTATTTGCCACMGTGGCCTAGAAATTTCCAAAATTTTCCTCGGCCTCGAATGTTTGAAACTATCATTTATGACATCGGTCAGCGGTCACCGTAACTCAGCTGGTACCTGCAAAGGTGGGCCCACAAGTACATCTCCTCTAGGGGTTTACATGAAAGAAATTACGAAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31654</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>124353</contig_pos>
        <strand>+</strand>
        <context>TTTTGATGAT[C/T]CACCAYYAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACTCGGTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGAT</left_flank>
        <right_flank>CACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGAC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATAGCTACATATACCGGAAACACTCTAATAGCACGCCACTCGGACTGTCCACGTTGAGCCTATGTATCTCACTTAATTTGAAAGATATCAAAAAGTTGTCAACTAATAAAATGTTTATCATAATATCAGCAATATTTTATCAGTTAGCAACTTTTTGATATCTTTCACAGAAAATGAGATACATGGGCTCAAAGTGCGCGGTCCGGGTGGCGTTTTATTAGAGTGTTTACGGTATTTCCCGTTAGGAGATGAAAATCATACCAAAAAATCTGTAAAAAAAGGTCCCACCCCTTTCACCAAATTTATCTCGGTTCCTGTAGGAGATATCAAAAAGTAATCAATTGATAAAATATTTTTGATAATATGAAAAATATTTTGTTAGTTGACCACTTTTTGATACGTCTCACAGGTAATGAGAAAAACTAGCTTCAAGTTAAGATTGTGGCAAACTCGGTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAATGTATCCCGGATAACCTGAAGTAAAATGTTTAGGTTAGTATTCAAAATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACA</canonical>
            <polymorphic>GGATAGCTACATATACCGGAAACACTCTAATAGCACGCCACTCGGACTGTCCACGTTGAGCCTATGTATCTCACTTAATTTGAAAGATATCAAAAAGTTGTCAACTAATAAAATGTTTATCATAATATCAGCAATATTTTATCAGTTAGCAACTTTTTGATATCTTTCACAGAAAATGAGATACATGGGCTCAAAGTGCGCGGTCCGGGTGGCGTTTTATTAGAGTGTTTACGGTATTTCCCGTTAGGAGATGAAAATCATACCAAAAAATCTGTAAAAAAAGGTCCCACCCCTTTCACCAAATTTATCTCGGTTCCTGTAGGAGATATCAAAAAGTAATCAATTGATAAAATATTTTTGATAATATGAAAAATATTTTGTTAGTTGACCACTTTTTGATACGTCTCACAGGTAATGAGAAAAACTAGCTTCAAGTTAAGATTGTGGCAAACTCGGTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATYCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAATGTATCCCGGATAACCTGAAGTAAAATGTTTAGGTTAGTATTCAAAATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>497 248 157 98</canonical_bands>
                <polymorphic_bands>654 248 98</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>497 248 157 98</canonical_bands>
                <polymorphic_bands>654 248 98</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGTTAGGAGATGAAAATCA</pcr_primer_p1>
		<pcr_primer_p2>TGAAAAATTTTGGTGAAGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>338</pcr_amplicon_size>
		<canonical_amplicon>CCGTTAGGAGATGAAAATCATACCAAAAAATCTGTAAAAAAAGGTCCCACCCCTTTCACCAAATTTATCTCGGTTCCTGTAGGAGATATCAAAAAGTAATCAATTGATAAAATATTTTTGATAATATGAAAAATATTTTGTTAGTTGACCACTTTTTGATACGTCTCACAGGTAATGAGAAAAACTAGCTTCAAGTTAAGATTGTGGCAAACTCGGTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCA</canonical_amplicon>
		<polymorphic_amplicon>CCGTTAGGAGATGAAAATCATACCAAAAAATCTGTAAAAAAAGGTCCCACCCCTTTCACCAAATTTATCTCGGTTCCTGTAGGAGATATCAAAAAGTAATCAATTGATAAAATATTTTTGATAATATGAAAAATATTTTGTTAGTTGACCACTTTTTGATACGTCTCACAGGTAATGAGAAAAACTAGCTTCAAGTTAAGATTGTGGCAAACTCGGTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATYCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31655</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>124359</contig_pos>
        <strand>+</strand>
        <context>TGATYCACCA[C/T]YAAAATTWTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCA</left_flank>
        <right_flank>CAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTACATATACCGGAAACACTCTAATAGCACGCCACTCGGACTGTCCACGTTGAGCCTATGTATCTCACTTAATTTGAAAGATATCAAAAAGTTGTCAACTAATAAAATGTTTATCATAATATCAGCAATATTTTATCAGTTAGCAACTTTTTGATATCTTTCACAGAAAATGAGATACATGGGCTCAAAGTGCGCGGTCCGGGTGGCGTTTTATTAGAGTGTTTACGGTATTTCCCGTTAGGAGATGAAAATCATACCAAAAAATCTGTAAAAAAAGGTCCCACCCCTTTCACCAAATTTATCTCGGTTCCTGTAGGAGATATCAAAAAGTAATCAATTGATAAAATATTTTTGATAATATGAAAAATATTTTGTTAGTTGACCACTTTTTGATACGTCTCACAGGTAATGAGAAAAACTAGCTTCAAGTTAAGATTGTGGCAAACTCGGTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAATGTATCCCGGATAACCTGAAGTAAAATGTTTAGGTTAGTATTCAAAATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTT</canonical>
            <polymorphic>CTACATATACCGGAAACACTCTAATAGCACGCCACTCGGACTGTCCACGTTGAGCCTATGTATCTCACTTAATTTGAAAGATATCAAAAAGTTGTCAACTAATAAAATGTTTATCATAATATCAGCAATATTTTATCAGTTAGCAACTTTTTGATATCTTTCACAGAAAATGAGATACATGGGCTCAAAGTGCGCGGTCCGGGTGGCGTTTTATTAGAGTGTTTACGGTATTTCCCGTTAGGAGATGAAAATCATACCAAAAAATCTGTAAAAAAAGGTCCCACCCCTTTCACCAAATTTATCTCGGTTCCTGTAGGAGATATCAAAAAGTAATCAATTGATAAAATATTTTTGATAATATGAAAAATATTTTGTTAGTTGACCACTTTTTGATACGTCTCACAGGTAATGAGAAAAACTAGCTTCAAGTTAAGATTGTGGCAAACTCGGTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCAYCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAATGTATCCCGGATAACCTGAAGTAAAATGTTTAGGTTAGTATTCAAAATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>144 125 96 93 62 59 46 38 37 31 29 25 24 23 23 20 18 17 16 14 13 13 11 9 6 5 3</canonical_bands>
                <polymorphic_bands>144 125 96 93 62 59 49 38 37 31 29 25 24 23 23 20 18 17 16 14 13 13 11 9 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGTCGTCGAGTTCACAAT</pcr_primer_p1>
		<pcr_primer_p2>AATGGATACAGAGACATGGTAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATT</canonical_amplicon>
		<polymorphic_amplicon>GTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCAYCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31656</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>124360</contig_pos>
        <strand>+</strand>
        <context>GATYCACCAY[C/T]AAAATTWTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCAC</left_flank>
        <right_flank>AAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACATATACCGGAAACACTCTAATAGCACGCCACTCGGACTGTCCACGTTGAGCCTATGTATCTCACTTAATTTGAAAGATATCAAAAAGTTGTCAACTAATAAAATGTTTATCATAATATCAGCAATATTTTATCAGTTAGCAACTTTTTGATATCTTTCACAGAAAATGAGATACATGGGCTCAAAGTGCGCGGTCCGGGTGGCGTTTTATTAGAGTGTTTACGGTATTTCCCGTTAGGAGATGAAAATCATACCAAAAAATCTGTAAAAAAAGGTCCCACCCCTTTCACCAAATTTATCTCGGTTCCTGTAGGAGATATCAAAAAGTAATCAATTGATAAAATATTTTTGATAATATGAAAAATATTTTGTTAGTTGACCACTTTTTGATACGTCTCACAGGTAATGAGAAAAACTAGCTTCAAGTTAAGATTGTGGCAAACTCGGTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAATGTATCCCGGATAACCTGAAGTAAAATGTTTAGGTTAGTATTCAAAATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTC</canonical>
            <polymorphic>TACATATACCGGAAACACTCTAATAGCACGCCACTCGGACTGTCCACGTTGAGCCTATGTATCTCACTTAATTTGAAAGATATCAAAAAGTTGTCAACTAATAAAATGTTTATCATAATATCAGCAATATTTTATCAGTTAGCAACTTTTTGATATCTTTCACAGAAAATGAGATACATGGGCTCAAAGTGCGCGGTCCGGGTGGCGTTTTATTAGAGTGTTTACGGTATTTCCCGTTAGGAGATGAAAATCATACCAAAAAATCTGTAAAAAAAGGTCCCACCCCTTTCACCAAATTTATCTCGGTTCCTGTAGGAGATATCAAAAAGTAATCAATTGATAAAATATTTTTGATAATATGAAAAATATTTTGTTAGTTGACCACTTTTTGATACGTCTCACAGGTAATGAGAAAAACTAGCTTCAAGTTAAGATTGTGGCAAACTCGGTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCACYAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAATGTATCCCGGATAACCTGAAGTAAAATGTTTAGGTTAGTATTCAAAATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGTCGTCGAGTTCACAAT</pcr_primer_p1>
		<pcr_primer_p2>AATGGATACAGAGACATGGTAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATT</canonical_amplicon>
		<polymorphic_amplicon>GTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCACYAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31657</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>124367</contig_pos>
        <strand>+</strand>
        <context>CAYYAAAATT[A/T]TCTAGTTCCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCACCAAAATT</left_flank>
        <right_flank>TCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCGGAAACACTCTAATAGCACGCCACTCGGACTGTCCACGTTGAGCCTATGTATCTCACTTAATTTGAAAGATATCAAAAAGTTGTCAACTAATAAAATGTTTATCATAATATCAGCAATATTTTATCAGTTAGCAACTTTTTGATATCTTTCACAGAAAATGAGATACATGGGCTCAAAGTGCGCGGTCCGGGTGGCGTTTTATTAGAGTGTTTACGGTATTTCCCGTTAGGAGATGAAAATCATACCAAAAAATCTGTAAAAAAAGGTCCCACCCCTTTCACCAAATTTATCTCGGTTCCTGTAGGAGATATCAAAAAGTAATCAATTGATAAAATATTTTTGATAATATGAAAAATATTTTGTTAGTTGACCACTTTTTGATACGTCTCACAGGTAATGAGAAAAACTAGCTTCAAGTTAAGATTGTGGCAAACTCGGTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAATGTATCCCGGATAACCTGAAGTAAAATGTTTAGGTTAGTATTCAAAATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGAT</canonical>
            <polymorphic>ACCGGAAACACTCTAATAGCACGCCACTCGGACTGTCCACGTTGAGCCTATGTATCTCACTTAATTTGAAAGATATCAAAAAGTTGTCAACTAATAAAATGTTTATCATAATATCAGCAATATTTTATCAGTTAGCAACTTTTTGATATCTTTCACAGAAAATGAGATACATGGGCTCAAAGTGCGCGGTCCGGGTGGCGTTTTATTAGAGTGTTTACGGTATTTCCCGTTAGGAGATGAAAATCATACCAAAAAATCTGTAAAAAAAGGTCCCACCCCTTTCACCAAATTTATCTCGGTTCCTGTAGGAGATATCAAAAAGTAATCAATTGATAAAATATTTTTGATAATATGAAAAATATTTTGTTAGTTGACCACTTTTTGATACGTCTCACAGGTAATGAGAAAAACTAGCTTCAAGTTAAGATTGTGGCAAACTCGGTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCACCAAAATTWTCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAATGTATCCCGGATAACCTGAAGTAAAATGTTTAGGTTAGTATTCAAAATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGTCGTCGAGTTCACAAT</pcr_primer_p1>
		<pcr_primer_p2>AATGGATACAGAGACATGGTAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATT</canonical_amplicon>
		<polymorphic_amplicon>GTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCACCAAAATTWTCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31658</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>124406</contig_pos>
        <strand>+</strand>
        <context>TATAGGACAC[A/C]GGTAAAACTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACAC</left_flank>
        <right_flank>GGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTTGAGCCTATGTATCTCACTTAATTTGAAAGATATCAAAAAGTTGTCAACTAATAAAATGTTTATCATAATATCAGCAATATTTTATCAGTTAGCAACTTTTTGATATCTTTCACAGAAAATGAGATACATGGGCTCAAAGTGCGCGGTCCGGGTGGCGTTTTATTAGAGTGTTTACGGTATTTCCCGTTAGGAGATGAAAATCATACCAAAAAATCTGTAAAAAAAGGTCCCACCCCTTTCACCAAATTTATCTCGGTTCCTGTAGGAGATATCAAAAAGTAATCAATTGATAAAATATTTTTGATAATATGAAAAATATTTTGTTAGTTGACCACTTTTTGATACGTCTCACAGGTAATGAGAAAAACTAGCTTCAAGTTAAGATTGTGGCAAACTCGGTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAATGTATCCCGGATAACCTGAAGTAAAATGTTTAGGTTAGTATTCAAAATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGATTTCATATTCATCCGAATCAATATAATGGAAATTGTCAGG</canonical>
            <polymorphic>CGTTGAGCCTATGTATCTCACTTAATTTGAAAGATATCAAAAAGTTGTCAACTAATAAAATGTTTATCATAATATCAGCAATATTTTATCAGTTAGCAACTTTTTGATATCTTTCACAGAAAATGAGATACATGGGCTCAAAGTGCGCGGTCCGGGTGGCGTTTTATTAGAGTGTTTACGGTATTTCCCGTTAGGAGATGAAAATCATACCAAAAAATCTGTAAAAAAAGGTCCCACCCCTTTCACCAAATTTATCTCGGTTCCTGTAGGAGATATCAAAAAGTAATCAATTGATAAAATATTTTTGATAATATGAAAAATATTTTGTTAGTTGACCACTTTTTGATACGTCTCACAGGTAATGAGAAAAACTAGCTTCAAGTTAAGATTGTGGCAAACTCGGTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACMGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAATGTATCCCGGATAACCTGAAGTAAAATGTTTAGGTTAGTATTCAAAATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGATTTCATATTCATCCGAATCAATATAATGGAAATTGTCAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGCTTCAAGCATTTTGATGA</pcr_primer_p1>
		<pcr_primer_p2>ATTTGCTTCTCCAGATTATGACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAAT</canonical_amplicon>
		<polymorphic_amplicon>TAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACMGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31659</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>124440</contig_pos>
        <strand>+</strand>
        <context>CATTTAGTTT[C/G]CCAWACTAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTT</left_flank>
        <right_flank>CCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCAAAAAGTTGTCAACTAATAAAATGTTTATCATAATATCAGCAATATTTTATCAGTTAGCAACTTTTTGATATCTTTCACAGAAAATGAGATACATGGGCTCAAAGTGCGCGGTCCGGGTGGCGTTTTATTAGAGTGTTTACGGTATTTCCCGTTAGGAGATGAAAATCATACCAAAAAATCTGTAAAAAAAGGTCCCACCCCTTTCACCAAATTTATCTCGGTTCCTGTAGGAGATATCAAAAAGTAATCAATTGATAAAATATTTTTGATAATATGAAAAATATTTTGTTAGTTGACCACTTTTTGATACGTCTCACAGGTAATGAGAAAAACTAGCTTCAAGTTAAGATTGTGGCAAACTCGGTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAATGTATCCCGGATAACCTGAAGTAAAATGTTTAGGTTAGTATTCAAAATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGATTTCATATTCATCCGAATCAATATAATGGAAATTGTCAGGATTTTCAATTGGATCCTGTGGGTTCAGGCTGGAA</canonical>
            <polymorphic>TATCAAAAAGTTGTCAACTAATAAAATGTTTATCATAATATCAGCAATATTTTATCAGTTAGCAACTTTTTGATATCTTTCACAGAAAATGAGATACATGGGCTCAAAGTGCGCGGTCCGGGTGGCGTTTTATTAGAGTGTTTACGGTATTTCCCGTTAGGAGATGAAAATCATACCAAAAAATCTGTAAAAAAAGGTCCCACCCCTTTCACCAAATTTATCTCGGTTCCTGTAGGAGATATCAAAAAGTAATCAATTGATAAAATATTTTTGATAATATGAAAAATATTTTGTTAGTTGACCACTTTTTGATACGTCTCACAGGTAATGAGAAAAACTAGCTTCAAGTTAAGATTGTGGCAAACTCGGTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTSCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAATGTATCCCGGATAACCTGAAGTAAAATGTTTAGGTTAGTATTCAAAATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGATTTCATATTCATCCGAATCAATATAATGGAAATTGTCAGGATTTTCAATTGGATCCTGTGGGTTCAGGCTGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGCTTCAAGCATTTTGATGA</pcr_primer_p1>
		<pcr_primer_p2>ATTTGCTTCTCCAGATTATGACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAAT</canonical_amplicon>
		<polymorphic_amplicon>TAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTSCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31660</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>124444</contig_pos>
        <strand>+</strand>
        <context>TAGTTTSCCA[A/T]ACTAATTATC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCA</left_flank>
        <right_flank>ACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAGTTGTCAACTAATAAAATGTTTATCATAATATCAGCAATATTTTATCAGTTAGCAACTTTTTGATATCTTTCACAGAAAATGAGATACATGGGCTCAAAGTGCGCGGTCCGGGTGGCGTTTTATTAGAGTGTTTACGGTATTTCCCGTTAGGAGATGAAAATCATACCAAAAAATCTGTAAAAAAAGGTCCCACCCCTTTCACCAAATTTATCTCGGTTCCTGTAGGAGATATCAAAAAGTAATCAATTGATAAAATATTTTTGATAATATGAAAAATATTTTGTTAGTTGACCACTTTTTGATACGTCTCACAGGTAATGAGAAAAACTAGCTTCAAGTTAAGATTGTGGCAAACTCGGTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAATGTATCCCGGATAACCTGAAGTAAAATGTTTAGGTTAGTATTCAAAATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGATTTCATATTCATCCGAATCAATATAATGGAAATTGTCAGGATTTTCAATTGGATCCTGTGGGTTCAGGCTGGAAAACG</canonical>
            <polymorphic>AAAAAGTTGTCAACTAATAAAATGTTTATCATAATATCAGCAATATTTTATCAGTTAGCAACTTTTTGATATCTTTCACAGAAAATGAGATACATGGGCTCAAAGTGCGCGGTCCGGGTGGCGTTTTATTAGAGTGTTTACGGTATTTCCCGTTAGGAGATGAAAATCATACCAAAAAATCTGTAAAAAAAGGTCCCACCCCTTTCACCAAATTTATCTCGGTTCCTGTAGGAGATATCAAAAAGTAATCAATTGATAAAATATTTTTGATAATATGAAAAATATTTTGTTAGTTGACCACTTTTTGATACGTCTCACAGGTAATGAGAAAAACTAGCTTCAAGTTAAGATTGTGGCAAACTCGGTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCAWACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAATGTATCCCGGATAACCTGAAGTAAAATGTTTAGGTTAGTATTCAAAATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGATTTCATATTCATCCGAATCAATATAATGGAAATTGTCAGGATTTTCAATTGGATCCTGTGGGTTCAGGCTGGAAAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGCTTCAAGCATTTTGATGA</pcr_primer_p1>
		<pcr_primer_p2>ATTTGCTTCTCCAGATTATGACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAAT</canonical_amplicon>
		<polymorphic_amplicon>TAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCAWACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31661</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>124507</contig_pos>
        <strand>+</strand>
        <context>AGACTATAGA[A/G]AATCGTGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGA</left_flank>
        <right_flank>AATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGATATCTTTCACAGAAAATGAGATACATGGGCTCAAAGTGCGCGGTCCGGGTGGCGTTTTATTAGAGTGTTTACGGTATTTCCCGTTAGGAGATGAAAATCATACCAAAAAATCTGTAAAAAAAGGTCCCACCCCTTTCACCAAATTTATCTCGGTTCCTGTAGGAGATATCAAAAAGTAATCAATTGATAAAATATTTTTGATAATATGAAAAATATTTTGTTAGTTGACCACTTTTTGATACGTCTCACAGGTAATGAGAAAAACTAGCTTCAAGTTAAGATTGTGGCAAACTCGGTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAATGTATCCCGGATAACCTGAAGTAAAATGTTTAGGTTAGTATTCAAAATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGATTTCATATTCATCCGAATCAATATAATGGAAATTGTCAGGATTTTCAATTGGATCCTGTGGGTTCAGGCTGGAAAACGTTGGAGCTTGGTGTCCCTGAGTGTAGCTGGTCTGTGAAGCGTCTAGGATGGGGTCAAATTGAT</canonical>
            <polymorphic>TTTTGATATCTTTCACAGAAAATGAGATACATGGGCTCAAAGTGCGCGGTCCGGGTGGCGTTTTATTAGAGTGTTTACGGTATTTCCCGTTAGGAGATGAAAATCATACCAAAAAATCTGTAAAAAAAGGTCCCACCCCTTTCACCAAATTTATCTCGGTTCCTGTAGGAGATATCAAAAAGTAATCAATTGATAAAATATTTTTGATAATATGAAAAATATTTTGTTAGTTGACCACTTTTTGATACGTCTCACAGGTAATGAGAAAAACTAGCTTCAAGTTAAGATTGTGGCAAACTCGGTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGARAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAATGTATCCCGGATAACCTGAAGTAAAATGTTTAGGTTAGTATTCAAAATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGATTTCATATTCATCCGAATCAATATAATGGAAATTGTCAGGATTTTCAATTGGATCCTGTGGGTTCAGGCTGGAAAACGTTGGAGCTTGGTGTCCCTGAGTGTAGCTGGTCTGTGAAGCGTCTAGGATGGGGTCAAATTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>343 248 157 126 126</canonical_bands>
                <polymorphic_bands>405 343 126 126</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>343 248 157 126 126</canonical_bands>
                <polymorphic_bands>405 343 126 126</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGCTTCAAGCATTTTGATGA</pcr_primer_p1>
		<pcr_primer_p2>ATTTGCTTCTCCAGATTATGACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAAT</canonical_amplicon>
		<polymorphic_amplicon>TAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGARAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31662</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>124625</contig_pos>
        <strand>+</strand>
        <context>TAGTATTCAA[A/C]ATCTATATAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCAAATGTATCCCGGATAACCTGAAGTAAAATGTTTAGGTTAGTATTCAA</left_flank>
        <right_flank>ATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTAAAAAAAGGTCCCACCCCTTTCACCAAATTTATCTCGGTTCCTGTAGGAGATATCAAAAAGTAATCAATTGATAAAATATTTTTGATAATATGAAAAATATTTTGTTAGTTGACCACTTTTTGATACGTCTCACAGGTAATGAGAAAAACTAGCTTCAAGTTAAGATTGTGGCAAACTCGGTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAATGTATCCCGGATAACCTGAAGTAAAATGTTTAGGTTAGTATTCAAAATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGATTTCATATTCATCCGAATCAATATAATGGAAATTGTCAGGATTTTCAATTGGATCCTGTGGGTTCAGGCTGGAAAACGTTGGAGCTTGGTGTCCCTGAGTGTAGCTGGTCTGTGAAGCGTCTAGGATGGGGTCAAATTGATTCGAGCTATCGCCAGAGATGTGACCAGAATTCTGGTATTTTCCATCAGATGCATATTCATCTTCTCCTTCAATACTCACGGCTTCTTTCTGGTCTTCTCTCATTGTGTCTTGAATTTT</canonical>
            <polymorphic>TGTAAAAAAAGGTCCCACCCCTTTCACCAAATTTATCTCGGTTCCTGTAGGAGATATCAAAAAGTAATCAATTGATAAAATATTTTTGATAATATGAAAAATATTTTGTTAGTTGACCACTTTTTGATACGTCTCACAGGTAATGAGAAAAACTAGCTTCAAGTTAAGATTGTGGCAAACTCGGTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAATGTATCCCGGATAACCTGAAGTAAAATGTTTAGGTTAGTATTCAAMATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGATTTCATATTCATCCGAATCAATATAATGGAAATTGTCAGGATTTTCAATTGGATCCTGTGGGTTCAGGCTGGAAAACGTTGGAGCTTGGTGTCCCTGAGTGTAGCTGGTCTGTGAAGCGTCTAGGATGGGGTCAAATTGATTCGAGCTATCGCCAGAGATGTGACCAGAATTCTGGTATTTTCCATCAGATGCATATTCATCTTCTCCTTCAATACTCACGGCTTCTTTCTGGTCTTCTCTCATTGTGTCTTGAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGTGATTAGAAATCTAGAAGTTG</pcr_primer_p1>
		<pcr_primer_p2>CAAGCGATCTATGAGGACAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAATGTATCCCGGATAACCTGAAGTAAAATGTTTAGGTTAGTATTCAAAATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTG</canonical_amplicon>
		<polymorphic_amplicon>TCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAATGTATCCCGGATAACCTGAAGTAAAATGTTTAGGTTAGTATTCAAMATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31663</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>124705</contig_pos>
        <strand>+</strand>
        <context>TCCCCATATG[C/T]TGGCTCCTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATG</left_flank>
        <right_flank>TGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTTTGATAATATGAAAAATATTTTGTTAGTTGACCACTTTTTGATACGTCTCACAGGTAATGAGAAAAACTAGCTTCAAGTTAAGATTGTGGCAAACTCGGTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAATGTATCCCGGATAACCTGAAGTAAAATGTTTAGGTTAGTATTCAAAATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGATTTCATATTCATCCGAATCAATATAATGGAAATTGTCAGGATTTTCAATTGGATCCTGTGGGTTCAGGCTGGAAAACGTTGGAGCTTGGTGTCCCTGAGTGTAGCTGGTCTGTGAAGCGTCTAGGATGGGGTCAAATTGATTCGAGCTATCGCCAGAGATGTGACCAGAATTCTGGTATTTTCCATCAGATGCATATTCATCTTCTCCTTCAATACTCACGGCTTCTTTCTGGTCTTCTCTCATTGTGTCTTGAATTTTAAGATCTTGGTTCTGAATACCCTTCTCTTCATTGTGAATGGGGATATCCAGGTTCTGGCCTTCCAGTTCTCCTCTTGTGA</canonical>
            <polymorphic>TATTTTTGATAATATGAAAAATATTTTGTTAGTTGACCACTTTTTGATACGTCTCACAGGTAATGAGAAAAACTAGCTTCAAGTTAAGATTGTGGCAAACTCGGTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAATGTATCCCGGATAACCTGAAGTAAAATGTTTAGGTTAGTATTCAAAATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGYTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGATTTCATATTCATCCGAATCAATATAATGGAAATTGTCAGGATTTTCAATTGGATCCTGTGGGTTCAGGCTGGAAAACGTTGGAGCTTGGTGTCCCTGAGTGTAGCTGGTCTGTGAAGCGTCTAGGATGGGGTCAAATTGATTCGAGCTATCGCCAGAGATGTGACCAGAATTCTGGTATTTTCCATCAGATGCATATTCATCTTCTCCTTCAATACTCACGGCTTCTTTCTGGTCTTCTCTCATTGTGTCTTGAATTTTAAGATCTTGGTTCTGAATACCCTTCTCTTCATTGTGAATGGGGATATCCAGGTTCTGGCCTTCCAGTTCTCCTCTTGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATATACCTCAAATGCGTCTC</pcr_primer_p1>
		<pcr_primer_p2>AATATGAAATCTTTGGAAGACCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGATTTCATATT</canonical_amplicon>
		<polymorphic_amplicon>TCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGYTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGATTTCATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31664</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>124792</contig_pos>
        <strand>+</strand>
        <context>TGCTGATCAT[C/T]GAGAYTTRGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCAT</left_flank>
        <right_flank>GAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGT</right_flank>
        <qual_score>146</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTGTGGCAAACTCGGTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAATGTATCCCGGATAACCTGAAGTAAAATGTTTAGGTTAGTATTCAAAATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGATTTCATATTCATCCGAATCAATATAATGGAAATTGTCAGGATTTTCAATTGGATCCTGTGGGTTCAGGCTGGAAAACGTTGGAGCTTGGTGTCCCTGAGTGTAGCTGGTCTGTGAAGCGTCTAGGATGGGGTCAAATTGATTCGAGCTATCGCCAGAGATGTGACCAGAATTCTGGTATTTTCCATCAGATGCATATTCATCTTCTCCTTCAATACTCACGGCTTCTTTCTGGTCTTCTCTCATTGTGTCTTGAATTTTAAGATCTTGGTTCTGAATACCCTTCTCTTCATTGTGAATGGGGATATCCAGGTTCTGGCCTTCCAGTTCTCCTCTTGTGAAATCTGTCTGTTGGTGTTGGTTCCGGGGGAGAACCAACCGAAATTTTAGGAGCTGGATCTTCGGTGGCACATAATTTTTAATATATT</canonical>
            <polymorphic>GATTGTGGCAAACTCGGTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAATGTATCCCGGATAACCTGAAGTAAAATGTTTAGGTTAGTATTCAAAATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATYGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGATTTCATATTCATCCGAATCAATATAATGGAAATTGTCAGGATTTTCAATTGGATCCTGTGGGTTCAGGCTGGAAAACGTTGGAGCTTGGTGTCCCTGAGTGTAGCTGGTCTGTGAAGCGTCTAGGATGGGGTCAAATTGATTCGAGCTATCGCCAGAGATGTGACCAGAATTCTGGTATTTTCCATCAGATGCATATTCATCTTCTCCTTCAATACTCACGGCTTCTTTCTGGTCTTCTCTCATTGTGTCTTGAATTTTAAGATCTTGGTTCTGAATACCCTTCTCTTCATTGTGAATGGGGATATCCAGGTTCTGGCCTTCCAGTTCTCCTCTTGTGAAATCTGTCTGTTGGTGTTGGTTCCGGGGGAGAACCAACCGAAATTTTAGGAGCTGGATCTTCGGTGGCACATAATTTTTAATATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATATACCTCAAATGCGTCTC</pcr_primer_p1>
		<pcr_primer_p2>AATATGAAATCTTTGGAAGACCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGATTTCATATT</canonical_amplicon>
		<polymorphic_amplicon>TCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATYGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGATTTCATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31665</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>124797</contig_pos>
        <strand>+</strand>
        <context>ATCATYGAGA[C/T]TTRGATCGTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGA</left_flank>
        <right_flank>TTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCAAACTCGGTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAATGTATCCCGGATAACCTGAAGTAAAATGTTTAGGTTAGTATTCAAAATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGATTTCATATTCATCCGAATCAATATAATGGAAATTGTCAGGATTTTCAATTGGATCCTGTGGGTTCAGGCTGGAAAACGTTGGAGCTTGGTGTCCCTGAGTGTAGCTGGTCTGTGAAGCGTCTAGGATGGGGTCAAATTGATTCGAGCTATCGCCAGAGATGTGACCAGAATTCTGGTATTTTCCATCAGATGCATATTCATCTTCTCCTTCAATACTCACGGCTTCTTTCTGGTCTTCTCTCATTGTGTCTTGAATTTTAAGATCTTGGTTCTGAATACCCTTCTCTTCATTGTGAATGGGGATATCCAGGTTCTGGCCTTCCAGTTCTCCTCTTGTGAAATCTGTCTGTTGGTGTTGGTTCCGGGGGAGAACCAACCGAAATTTTAGGAGCTGGATCTTCGGTGGCACATAATTTTTAATATATTTGATC</canonical>
            <polymorphic>TGGCAAACTCGGTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAATGTATCCCGGATAACCTGAAGTAAAATGTTTAGGTTAGTATTCAAAATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGAYTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGATTTCATATTCATCCGAATCAATATAATGGAAATTGTCAGGATTTTCAATTGGATCCTGTGGGTTCAGGCTGGAAAACGTTGGAGCTTGGTGTCCCTGAGTGTAGCTGGTCTGTGAAGCGTCTAGGATGGGGTCAAATTGATTCGAGCTATCGCCAGAGATGTGACCAGAATTCTGGTATTTTCCATCAGATGCATATTCATCTTCTCCTTCAATACTCACGGCTTCTTTCTGGTCTTCTCTCATTGTGTCTTGAATTTTAAGATCTTGGTTCTGAATACCCTTCTCTTCATTGTGAATGGGGATATCCAGGTTCTGGCCTTCCAGTTCTCCTCTTGTGAAATCTGTCTGTTGGTGTTGGTTCCGGGGGAGAACCAACCGAAATTTTAGGAGCTGGATCTTCGGTGGCACATAATTTTTAATATATTTGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATATACCTCAAATGCGTCTC</pcr_primer_p1>
		<pcr_primer_p2>AATATGAAATCTTTGGAAGACCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGATTTCATATT</canonical_amplicon>
		<polymorphic_amplicon>TCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGAYTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGATTTCATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31666</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>124800</contig_pos>
        <strand>+</strand>
        <context>ATYGAGAYTT[A/G]GATCGTGGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTT</left_flank>
        <right_flank>GATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAACTCGGTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAATGTATCCCGGATAACCTGAAGTAAAATGTTTAGGTTAGTATTCAAAATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGATTTCATATTCATCCGAATCAATATAATGGAAATTGTCAGGATTTTCAATTGGATCCTGTGGGTTCAGGCTGGAAAACGTTGGAGCTTGGTGTCCCTGAGTGTAGCTGGTCTGTGAAGCGTCTAGGATGGGGTCAAATTGATTCGAGCTATCGCCAGAGATGTGACCAGAATTCTGGTATTTTCCATCAGATGCATATTCATCTTCTCCTTCAATACTCACGGCTTCTTTCTGGTCTTCTCTCATTGTGTCTTGAATTTTAAGATCTTGGTTCTGAATACCCTTCTCTTCATTGTGAATGGGGATATCCAGGTTCTGGCCTTCCAGTTCTCCTCTTGTGAAATCTGTCTGTTGGTGTTGGTTCCGGGGGAGAACCAACCGAAATTTTAGGAGCTGGATCTTCGGTGGCACATAATTTTTAATATATTTGATCTGC</canonical>
            <polymorphic>CAAACTCGGTTGTCGTCGAGTTCACAATCGTAGCTTCAAGCATTTTGATGATTCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAATGTATCCCGGATAACCTGAAGTAAAATGTTTAGGTTAGTATTCAAAATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTRGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGATTTCATATTCATCCGAATCAATATAATGGAAATTGTCAGGATTTTCAATTGGATCCTGTGGGTTCAGGCTGGAAAACGTTGGAGCTTGGTGTCCCTGAGTGTAGCTGGTCTGTGAAGCGTCTAGGATGGGGTCAAATTGATTCGAGCTATCGCCAGAGATGTGACCAGAATTCTGGTATTTTCCATCAGATGCATATTCATCTTCTCCTTCAATACTCACGGCTTCTTTCTGGTCTTCTCTCATTGTGTCTTGAATTTTAAGATCTTGGTTCTGAATACCCTTCTCTTCATTGTGAATGGGGATATCCAGGTTCTGGCCTTCCAGTTCTCCTCTTGTGAAATCTGTCTGTTGGTGTTGGTTCCGGGGGAGAACCAACCGAAATTTTAGGAGCTGGATCTTCGGTGGCACATAATTTTTAATATATTTGATCTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATATACCTCAAATGCGTCTC</pcr_primer_p1>
		<pcr_primer_p2>AATATGAAATCTTTGGAAGACCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGATTTCATATT</canonical_amplicon>
		<polymorphic_amplicon>TCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTRGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGATTTCATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31667</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>124852</contig_pos>
        <strand>+</strand>
        <context>TTTGGGGATA[C/T]AGGTCTTCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATA</left_flank>
        <right_flank>AGGTCTTCCAAAGATTTCATATTCATCCGAATCAATATAATGGAAATTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAATGTATCCCGGATAACCTGAAGTAAAATGTTTAGGTTAGTATTCAAAATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGATTTCATATTCATCCGAATCAATATAATGGAAATTGTCAGGATTTTCAATTGGATCCTGTGGGTTCAGGCTGGAAAACGTTGGAGCTTGGTGTCCCTGAGTGTAGCTGGTCTGTGAAGCGTCTAGGATGGGGTCAAATTGATTCGAGCTATCGCCAGAGATGTGACCAGAATTCTGGTATTTTCCATCAGATGCATATTCATCTTCTCCTTCAATACTCACGGCTTCTTTCTGGTCTTCTCTCATTGTGTCTTGAATTTTAAGATCTTGGTTCTGAATACCCTTCTCTTCATTGTGAATGGGGATATCCAGGTTCTGGCCTTCCAGTTCTCCTCTTGTGAAATCTGTCTGTTGGTGTTGGTTCCGGGGGAGAACCAACCGAAATTTTAGGAGCTGGATCTTCGGTGGCACATAATTTTTAATATATTTGATCTGCTCCGATCGATGGTTTTCCTCCTGGGTTTCTGTAGTGGTCAAAGAACTACAAT</canonical>
            <polymorphic>TCACCACCAAAATTATCTAGTTCCGTTAGATTTTCGACTTAATTATAGGACACAGGTAAAACTTCACCAAAATTTTTCATTTAGTTTCCCATACTAATTATCTGAAATTAAAAAATTGTTTGCCACCTGTAGGCATCATTCCATAGACTATAGAGAATCGTGATTAGAAATCTAGAAGTTGCTTACCATGTCTCTGTATCCATTAAGTCATAATCTGGAGAAGCAAATGTATCCCGGATAACCTGAAGTAAAATGTTTAGGTTAGTATTCAAAATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATAYAGGTCTTCCAAAGATTTCATATTCATCCGAATCAATATAATGGAAATTGTCAGGATTTTCAATTGGATCCTGTGGGTTCAGGCTGGAAAACGTTGGAGCTTGGTGTCCCTGAGTGTAGCTGGTCTGTGAAGCGTCTAGGATGGGGTCAAATTGATTCGAGCTATCGCCAGAGATGTGACCAGAATTCTGGTATTTTCCATCAGATGCATATTCATCTTCTCCTTCAATACTCACGGCTTCTTTCTGGTCTTCTCTCATTGTGTCTTGAATTTTAAGATCTTGGTTCTGAATACCCTTCTCTTCATTGTGAATGGGGATATCCAGGTTCTGGCCTTCCAGTTCTCCTCTTGTGAAATCTGTCTGTTGGTGTTGGTTCCGGGGGAGAACCAACCGAAATTTTAGGAGCTGGATCTTCGGTGGCACATAATTTTTAATATATTTGATCTGCTCCGATCGATGGTTTTCCTCCTGGGTTTCTGTAGTGGTCAAAGAACTACAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATGGGAAATAATCAACAA</pcr_primer_p1>
		<pcr_primer_p2>AAAATCCTGACAATTTCCATTA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGATTTCATATTCATCCGAATCAATATAATGGAAATTGTCAGGATTTT</canonical_amplicon>
		<polymorphic_amplicon>GGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATAYAGGTCTTCCAAAGATTTCATATTCATCCGAATCAATATAATGGAAATTGTCAGGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31668</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>125111</contig_pos>
        <strand>+</strand>
        <context>CTTCTCTCAT[C/T]GTGTCTTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTCATCTTCTCCTTCAATACTCACGGCTTCTTTCTGGTCTTCTCTCAT</left_flank>
        <right_flank>GTGTCTTGAATTTTAAGATCTTGGTTCTGAATACCCTTCTCTTCATTGTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTAGTATTCAAAATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGATTTCATATTCATCCGAATCAATATAATGGAAATTGTCAGGATTTTCAATTGGATCCTGTGGGTTCAGGCTGGAAAACGTTGGAGCTTGGTGTCCCTGAGTGTAGCTGGTCTGTGAAGCGTCTAGGATGGGGTCAAATTGATTCGAGCTATCGCCAGAGATGTGACCAGAATTCTGGTATTTTCCATCAGATGCATATTCATCTTCTCCTTCAATACTCACGGCTTCTTTCTGGTCTTCTCTCATTGTGTCTTGAATTTTAAGATCTTGGTTCTGAATACCCTTCTCTTCATTGTGAATGGGGATATCCAGGTTCTGGCCTTCCAGTTCTCCTCTTGTGAAATCTGTCTGTTGGTGTTGGTTCCGGGGGAGAACCAACCGAAATTTTAGGAGCTGGATCTTCGGTGGCACATAATTTTTAATATATTTGATCTGCTCCGATCGATGGTTTTCCTCCTGGGTTTCTGTAGTGGTCAAAGAACTACAATCAAACTGAAAATTGTTGCTTTACTTGAGTTACCATACTAGAAACTCACTATGGCGCACTGTCTTCGATGGTCACAGACAGAGACTTGCTCCGCAAACTGTTTCCCGCATTGGCACACAAAACGGAAGCACTTTCTGAAAAAAGGAAGATATGTTATCGGCCAAAAAGCTGTAAACATACGTGTGAGCTGCAAAGTGCTCATGGATAGCTACAATGTTGTTCACATGGTCACATATCCCATGCTCTTCGGGGTAGGTACA</canonical>
            <polymorphic>GGTTAGTATTCAAAATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGATTTCATATTCATCCGAATCAATATAATGGAAATTGTCAGGATTTTCAATTGGATCCTGTGGGTTCAGGCTGGAAAACGTTGGAGCTTGGTGTCCCTGAGTGTAGCTGGTCTGTGAAGCGTCTAGGATGGGGTCAAATTGATTCGAGCTATCGCCAGAGATGTGACCAGAATTCTGGTATTTTCCATCAGATGCATATTCATCTTCTCCTTCAATACTCACGGCTTCTTTCTGGTCTTCTCTCATYGTGTCTTGAATTTTAAGATCTTGGTTCTGAATACCCTTCTCTTCATTGTGAATGGGGATATCCAGGTTCTGGCCTTCCAGTTCTCCTCTTGTGAAATCTGTCTGTTGGTGTTGGTTCCGGGGGAGAACCAACCGAAATTTTAGGAGCTGGATCTTCGGTGGCACATAATTTTTAATATATTTGATCTGCTCCGATCGATGGTTTTCCTCCTGGGTTTCTGTAGTGGTCAAAGAACTACAATCAAACTGAAAATTGTTGCTTTACTTGAGTTACCATACTAGAAACTCACTATGGCGCACTGTCTTCGATGGTCACAGACAGAGACTTGCTCCGCAAACTGTTTCCCGCATTGGCACACAAAACGGAAGCACTTTCTGAAAAAAGGAAGATATGTTATCGGCCAAAAAGCTGTAAACATACGTGTGAGCTGCAAAGTGCTCATGGATAGCTACAATGTTGTTCACATGGTCACATATCCCATGCTCTTCGGGGTAGGTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGTGTAGCTGGTCTGTGA</pcr_primer_p1>
		<pcr_primer_p2>CAGATTTCACAAGAGGAGAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAGTGTAGCTGGTCTGTGAAGCGTCTAGGATGGGGTCAAATTGATTCGAGCTATCGCCAGAGATGTGACCAGAATTCTGGTATTTTCCATCAGATGCATATTCATCTTCTCCTTCAATACTCACGGCTTCTTTCTGGTCTTCTCTCATTGTGTCTTGAATTTTAAGATCTTGGTTCTGAATACCCTTCTCTTCATTGTGAATGGGGATATCCAGGTTCTGGCCTTCCAGTTCTCCTCTTGTGAAATCTG</canonical_amplicon>
		<polymorphic_amplicon>TGAGTGTAGCTGGTCTGTGAAGCGTCTAGGATGGGGTCAAATTGATTCGAGCTATCGCCAGAGATGTGACCAGAATTCTGGTATTTTCCATCAGATGCATATTCATCTTCTCCTTCAATACTCACGGCTTCTTTCTGGTCTTCTCTCATYGTGTCTTGAATTTTAAGATCTTGGTTCTGAATACCCTTCTCTTCATTGTGAATGGGGATATCCAGGTTCTGGCCTTCCAGTTCTCCTCTTGTGAAATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31669</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>125122</contig_pos>
        <strand>+</strand>
        <context>GTGTCTTGAA[C/T]TTTAAGATCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCTTCAATACTCACGGCTTCTTTCTGGTCTTCTCTCATTGTGTCTTGAA</left_flank>
        <right_flank>TTTAAGATCTTGGTTCTGAATACCCTTCTCTTCATTGTGAATGGGGATAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGATTTCATATTCATCCGAATCAATATAATGGAAATTGTCAGGATTTTCAATTGGATCCTGTGGGTTCAGGCTGGAAAACGTTGGAGCTTGGTGTCCCTGAGTGTAGCTGGTCTGTGAAGCGTCTAGGATGGGGTCAAATTGATTCGAGCTATCGCCAGAGATGTGACCAGAATTCTGGTATTTTCCATCAGATGCATATTCATCTTCTCCTTCAATACTCACGGCTTCTTTCTGGTCTTCTCTCATTGTGTCTTGAATTTTAAGATCTTGGTTCTGAATACCCTTCTCTTCATTGTGAATGGGGATATCCAGGTTCTGGCCTTCCAGTTCTCCTCTTGTGAAATCTGTCTGTTGGTGTTGGTTCCGGGGGAGAACCAACCGAAATTTTAGGAGCTGGATCTTCGGTGGCACATAATTTTTAATATATTTGATCTGCTCCGATCGATGGTTTTCCTCCTGGGTTTCTGTAGTGGTCAAAGAACTACAATCAAACTGAAAATTGTTGCTTTACTTGAGTTACCATACTAGAAACTCACTATGGCGCACTGTCTTCGATGGTCACAGACAGAGACTTGCTCCGCAAACTGTTTCCCGCATTGGCACACAAAACGGAAGCACTTTCTGAAAAAAGGAAGATATGTTATCGGCCAAAAAGCTGTAAACATACGTGTGAGCTGCAAAGTGCTCATGGATAGCTACAATGTTGTTCACATGGTCACATATCCCATGCTCTTCGGGGTAGGTACAGATGAGGAGGA</canonical>
            <polymorphic>AAAATCTATATACCTCAAATGCGTCTCGGCTGGGTGGATGGGAAATAATCAACAATTTCGTTGAACCTAGGATCCCCATATGTTGGCTCCTCGGCCTCATCTTGGAGGTCCATGTCCTCATAGATCGCTTGCGATTCCTCCAACTCCTCTGAAGCCCTGTGCTGATCATTGAGACTTGGATCGTGGTTTTCGGTATTGGTACCCGCCACATCCACATCGTTTGGGGATACAGGTCTTCCAAAGATTTCATATTCATCCGAATCAATATAATGGAAATTGTCAGGATTTTCAATTGGATCCTGTGGGTTCAGGCTGGAAAACGTTGGAGCTTGGTGTCCCTGAGTGTAGCTGGTCTGTGAAGCGTCTAGGATGGGGTCAAATTGATTCGAGCTATCGCCAGAGATGTGACCAGAATTCTGGTATTTTCCATCAGATGCATATTCATCTTCTCCTTCAATACTCACGGCTTCTTTCTGGTCTTCTCTCATTGTGTCTTGAAYTTTAAGATCTTGGTTCTGAATACCCTTCTCTTCATTGTGAATGGGGATATCCAGGTTCTGGCCTTCCAGTTCTCCTCTTGTGAAATCTGTCTGTTGGTGTTGGTTCCGGGGGAGAACCAACCGAAATTTTAGGAGCTGGATCTTCGGTGGCACATAATTTTTAATATATTTGATCTGCTCCGATCGATGGTTTTCCTCCTGGGTTTCTGTAGTGGTCAAAGAACTACAATCAAACTGAAAATTGTTGCTTTACTTGAGTTACCATACTAGAAACTCACTATGGCGCACTGTCTTCGATGGTCACAGACAGAGACTTGCTCCGCAAACTGTTTCCCGCATTGGCACACAAAACGGAAGCACTTTCTGAAAAAAGGAAGATATGTTATCGGCCAAAAAGCTGTAAACATACGTGTGAGCTGCAAAGTGCTCATGGATAGCTACAATGTTGTTCACATGGTCACATATCCCATGCTCTTCGGGGTAGGTACAGATGAGGAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>412 376 127 85</canonical_bands>
                <polymorphic_bands>412 376 212</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>261 221 127 88 85 84 53 34 31 16</canonical_bands>
                <polymorphic_bands>261 221 212 88 84 53 34 31 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGTGTAGCTGGTCTGTGA</pcr_primer_p1>
		<pcr_primer_p2>CAGATTTCACAAGAGGAGAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAGTGTAGCTGGTCTGTGAAGCGTCTAGGATGGGGTCAAATTGATTCGAGCTATCGCCAGAGATGTGACCAGAATTCTGGTATTTTCCATCAGATGCATATTCATCTTCTCCTTCAATACTCACGGCTTCTTTCTGGTCTTCTCTCATTGTGTCTTGAATTTTAAGATCTTGGTTCTGAATACCCTTCTCTTCATTGTGAATGGGGATATCCAGGTTCTGGCCTTCCAGTTCTCCTCTTGTGAAATCTG</canonical_amplicon>
		<polymorphic_amplicon>TGAGTGTAGCTGGTCTGTGAAGCGTCTAGGATGGGGTCAAATTGATTCGAGCTATCGCCAGAGATGTGACCAGAATTCTGGTATTTTCCATCAGATGCATATTCATCTTCTCCTTCAATACTCACGGCTTCTTTCTGGTCTTCTCTCATTGTGTCTTGAAYTTTAAGATCTTGGTTCTGAATACCCTTCTCTTCATTGTGAATGGGGATATCCAGGTTCTGGCCTTCCAGTTCTCCTCTTGTGAAATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31670</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>155804</contig_pos>
        <strand>+</strand>
        <context>AGCACAACTT[A/G]TTGAGCAAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGGTTCTGGAAGAGCAATATGGAGGACAAGTTCGCATCAAGCACAACTT</left_flank>
        <right_flank>TTGAGCAAGCTGAGTGATCTTCCTGATCTTTCGCAGGACACCAATTCCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCACTGATGCAAGCCGCAGACGACTTCATCGGAGATGCCACATCAACTCAAACACCAATCACTCAACCACCAACCAATGGCGGGCAAATGGAAATGCCCAAATCAACTTTCAACCTCAACCAAACCAATCAATCCACCAACGCCGAATCCGACTTCATCATCAACGTGGGATCAAACGCTGATCCAATCGTACCAATTCCATCATCAGGACATAACATTGTGGTTAGTCACCAATCTCGTCTTGCTGTCCCTCAAATGAAAATCCCCACCTTCTCGGGTGACATCTCCAAATTTCTCGAGTTTCGAGACTCTTTCACATTTACCATGCGCCTGATTCAAGTTGACGACCTCTCGAAGCTACACTATTTGAGATCCTCCATGGAAGGAGAACCAGAAGAGTTACTACGCAGTCTACCCATCATCAGTTCCAACTATGAGATCGCAATGAAGGTTCTGGAAGAGCAATATGGAGGACAAGTTCGCATCAAGCACAACTTGTTGAGCAAGCTGAGTGATCTTCCTGATCTTTCGCAGGACACCAATTCCACAAACTTCAGAAGATTCACAATCCAGGCTAGTCTATATTTCGACCAGTTACTCAACTTGAATTGTGACGTCGACAACTTCTCAACTGGTCACATAATCCAGAACAAACTTCCAACACGAATCAAACGAATCCTTTTTGGGAAAGGAGAAGCGAACATGCCTACTTCCACCAAGGATCTGATCTCTCGATTGAAAGAACTTTCCCGCGATGAAAACCTTCTCACCGAGCTGTTCAAAAACAAAGGAAATCAACATCAAACAAGCACCACGATGCTGAGTCAGCAGACCACCAACAAACATAAACAACAAAAAGATCATCTGGGACATCTTGGACAAGGAAAACAAATCGATTCAACCACCTTCAAAGTGACCACACCATGTGCCTTTTGCGCAGAGGAGAAGTTCATTCATCCTCACATTCATTGCAAAAGATACAGCACAGTGGAATCACG</canonical>
            <polymorphic>CCTCACTGATGCAAGCCGCAGACGACTTCATCGGAGATGCCACATCAACTCAAACACCAATCACTCAACCACCAACCAATGGCGGGCAAATGGAAATGCCCAAATCAACTTTCAACCTCAACCAAACCAATCAATCCACCAACGCCGAATCCGACTTCATCATCAACGTGGGATCAAACGCTGATCCAATCGTACCAATTCCATCATCAGGACATAACATTGTGGTTAGTCACCAATCTCGTCTTGCTGTCCCTCAAATGAAAATCCCCACCTTCTCGGGTGACATCTCCAAATTTCTCGAGTTTCGAGACTCTTTCACATTTACCATGCGCCTGATTCAAGTTGACGACCTCTCGAAGCTACACTATTTGAGATCCTCCATGGAAGGAGAACCAGAAGAGTTACTACGCAGTCTACCCATCATCAGTTCCAACTATGAGATCGCAATGAAGGTTCTGGAAGAGCAATATGGAGGACAAGTTCGCATCAAGCACAACTTRTTGAGCAAGCTGAGTGATCTTCCTGATCTTTCGCAGGACACCAATTCCACAAACTTCAGAAGATTCACAATCCAGGCTAGTCTATATTTCGACCAGTTACTCAACTTGAATTGTGACGTCGACAACTTCTCAACTGGTCACATAATCCAGAACAAACTTCCAACACGAATCAAACGAATCCTTTTTGGGAAAGGAGAAGCGAACATGCCTACTTCCACCAAGGATCTGATCTCTCGATTGAAAGAACTTTCCCGCGATGAAAACCTTCTCACCGAGCTGTTCAAAAACAAAGGAAATCAACATCAAACAAGCACCACGATGCTGAGTCAGCAGACCACCAACAAACATAAACAACAAAAAGATCATCTGGGACATCTTGGACAAGGAAAACAAATCGATTCAACCACCTTCAAAGTGACCACACCATGTGCCTTTTGCGCAGAGGAGAAGTTCATTCATCCTCACATTCATTGCAAAAGATACAGCACAGTGGAATCACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGAGTTACTACGCAGTCTACC</pcr_primer_p1>
		<pcr_primer_p2>TATGTGACCAGTTGAGAAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAGAGTTACTACGCAGTCTACCCATCATCAGTTCCAACTATGAGATCGCAATGAAGGTTCTGGAAGAGCAATATGGAGGACAAGTTCGCATCAAGCACAACTTGTTGAGCAAGCTGAGTGATCTTCCTGATCTTTCGCAGGACACCAATTCCACAAACTTCAGAAGATTCACAATCCAGGCTAGTCTATATTTCGACCAGTTACTCAACTTGAATTGTGACGTCGACAACTTCTCAACTGGTCACATA</canonical_amplicon>
		<polymorphic_amplicon>AGAAGAGTTACTACGCAGTCTACCCATCATCAGTTCCAACTATGAGATCGCAATGAAGGTTCTGGAAGAGCAATATGGAGGACAAGTTCGCATCAAGCACAACTTRTTGAGCAAGCTGAGTGATCTTCCTGATCTTTCGCAGGACACCAATTCCACAAACTTCAGAAGATTCACAATCCAGGCTAGTCTATATTTCGACCAGTTACTCAACTTGAATTGTGACGTCGACAACTTCTCAACTGGTCACATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31671</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>179286</contig_pos>
        <strand>+</strand>
        <context>AGACGAAAAA[A/C]CCCTTTTTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGATCACATTTCAATGTGGAAGATCCCTAGTATCTGAGATAGACGAAAAA</left_flank>
        <right_flank>CCCTTTTTTATAATTTTGTTAGTCCACATTGTAGTTTCGTTCGTTCACAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGGGATGTGAATGGTGGATGCGTTTTTTGACATGAAACATTCGGTAGCTAAACATAATCATTTTTGAAAAAAAAACGGCACAAATTAAAAAAATAACCGATAAGGTGGTCTAAAATAGAACAGAGAATGCTGCAAAACATGAATTGTTGAGTGCAAAGCCATGGCGCCAAAGAAAAACGAGCAGATGTTCTGAAATGTTTTAAAAACTGGAAGAGAGCGCTAAGGAGACGTAGCACAAGACAACCAAAAAAAAATGAGGCGGTCAGGAATCGAAAAGAAAGATGTACTCTTCTCTTTTCTTATGATGAGACGGCTGGCACCGACGGTTCCACTGGAGCAACCACGTCTTGGCAAAAGAGAGAAAAAGTTCTGGGACACTGGAAAGAACAGATAAGAGAGAGAAAAGTGCGCTTGCTCGAGGAAACTAAACTTCGAAAAAAAATTGCTAGATCACATTTCAATGTGGAAGATCCCTAGTATCTGAGATAGACGAAAAACCCCTTTTTTATAATTTTGTTAGTCCACATTGTAGTTTCGTTCGTTCACATTGTATCTTTAACAGGAAACACGTCATTTCTCACTAGAGGCACTAGCTAGGGGTACAAGACTAGCAGTAATTAAGACGGAGTCAAAAAATTGGGGCTATCTTCTATAATTAGCCCAGAAGCCAATTATTGAGCTGAATATATATCCGTCATAATTTTTTCCCTCATTGTAAGAATATGGCTCTCCAATTCTAGAAAAAAGCCACAACGAGTCCGCCCCTTCTAACACTTTCTATTGAGATTTTAGGAACATTTTTGCATAAGAAAAGAGACAAAAATTCGAATAAAGAAAAAAAGGATACTTTGAATACAAAGCGAAAACTGTTTCCCACACAAGCCAAAAAAAAGGAAAAAAAAAGAAAGAGCGGTATATATTTTTTCGAATCATACAGAACAGGAAGACAATTTTTTCTCCTTCGCGCCCTCGTAGCTCAGCTGGTAGCGGCGCTACCC</canonical>
            <polymorphic>TGAGGGATGTGAATGGTGGATGCGTTTTTTGACATGAAACATTCGGTAGCTAAACATAATCATTTTTGAAAAAAAAACGGCACAAATTAAAAAAATAACCGATAAGGTGGTCTAAAATAGAACAGAGAATGCTGCAAAACATGAATTGTTGAGTGCAAAGCCATGGCGCCAAAGAAAAACGAGCAGATGTTCTGAAATGTTTTAAAAACTGGAAGAGAGCGCTAAGGAGACGTAGCACAAGACAACCAAAAAAAAATGAGGCGGTCAGGAATCGAAAAGAAAGATGTACTCTTCTCTTTTCTTATGATGAGACGGCTGGCACCGACGGTTCCACTGGAGCAACCACGTCTTGGCAAAAGAGAGAAAAAGTTCTGGGACACTGGAAAGAACAGATAAGAGAGAGAAAAGTGCGCTTGCTCGAGGAAACTAAACTTCGAAAAAAAATTGCTAGATCACATTTCAATGTGGAAGATCCCTAGTATCTGAGATAGACGAAAAAMCCCTTTTTTATAATTTTGTTAGTCCACATTGTAGTTTCGTTCGTTCACATTGTATCTTTAACAGGAAACACGTCATTTCTCACTAGAGGCACTAGCTAGGGGTACAAGACTAGCAGTAATTAAGACGGAGTCAAAAAATTGGGGCTATCTTCTATAATTAGCCCAGAAGCCAATTATTGAGCTGAATATATATCCGTCATAATTTTTTCCCTCATTGTAAGAATATGGCTCTCCAATTCTAGAAAAAAGCCACAACGAGTCCGCCCCTTCTAACACTTTCTATTGAGATTTTAGGAACATTTTTGCATAAGAAAAGAGACAAAAATTCGAATAAAGAAAAAAAGGATACTTTGAATACAAAGCGAAAACTGTTTCCCACACAAGCCAAAAAAAAGGAAAAAAAAAGAAAGAGCGGTATATATTTTTTCGAATCATACAGAACAGGAAGACAATTTTTTCTCCTTCGCGCCCTCGTAGCTCAGCTGGTAGCGGCGCTACCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAAAGAACAGATAAGAGAGAG</pcr_primer_p1>
		<pcr_primer_p2>CTCCGTCTTAATTACTGCTAGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGAAAGAACAGATAAGAGAGAGAAAAGTGCGCTTGCTCGAGGAAACTAAACTTCGAAAAAAAATTGCTAGATCACATTTCAATGTGGAAGATCCCTAGTATCTGAGATAGACGAAAAACCCCTTTTTTATAATTTTGTTAGTCCACATTGTAGTTTCGTTCGTTCACATTGTATCTTTAACAGGAAACACGTCATTTCTCACTAGAGGCACTAGCTAGGGGTACAAGACTAGCAGTAATTAAGACGGAG</canonical_amplicon>
		<polymorphic_amplicon>TGGAAAGAACAGATAAGAGAGAGAAAAGTGCGCTTGCTCGAGGAAACTAAACTTCGAAAAAAAATTGCTAGATCACATTTCAATGTGGAAGATCCCTAGTATCTGAGATAGACGAAAAAMCCCTTTTTTATAATTTTGTTAGTCCACATTGTAGTTTCGTTCGTTCACATTGTATCTTTAACAGGAAACACGTCATTTCTCACTAGAGGCACTAGCTAGGGGTACAAGACTAGCAGTAATTAAGACGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31672</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>182466</contig_pos>
        <strand>+</strand>
        <context>TTGGAAGCAT[C/T]TACAGCCTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGGGAGAATAACAGTCTACCACCACCACCAAGTTTATCATTGGAAGCAT</left_flank>
        <right_flank>TACAGCCTATCCGTCACCCCATGGCAGTAATGATTATGATGAATATGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTATATATTAGACTTCGAAAAATGGGAATTTAAGAAACTCCTTTTTTTTCAGGCCGAAAACTTTGGCGAAGTCATGTCTTCTACACGACGTCGTCAGAATCTGGAGCGAGTATCCGGTGTGTTGGATACAGAGCTAAAACGGATGTACAACAATCAGACAGCAGATGTCATGGTTTCGAATTCCAAGCAAATTGTAATGCTTACTAGAATAAAGACTGAAAACGACATATATTTTTCAGAGTGTTCTTGAATTTATGGAATATCTCTACTACAAAATCAACGATGCTATTAACATAGTTGATGGTGGACAGAATCGAGGATTTCATAGACTCGCAAGGTTTCAGCACAAGATTAAAGATAAATCGGTTAGTTTAAAATCAAAGAAGGCGAAGCCTAATTTTTCACTTTTCAGGGTCTCGCTATGACAATCCTAACTATTCCGTTGTCTGGGGAGAATAACAGTCTACCACCACCACCAAGTTTATCATTGGAAGCATCTACAGCCTATCCGTCACCCCATGGCAGTAATGATTATGATGAATATGAGAAGGTTAGTTCAGGGAAATATTGTAAAATTTGAATTCCTGAAACAGTAATTCAGAATGTTTCTAAAAGTTTTCGAAAATAATTTCCAACCACCAAAATTTACATATTCCTGGTCCAACCCTTCCAAAAGAAAAGAATACATTAACACCTTTTAAAAACAATAACATAATTTTCTTCAAATTAAATATGTACGGCTTTCGCCGTCTAACCGTCCTTATCTGTCCTTTCACAAGTTCAGCAAAATTTTCAGACCTCTTAAGCACACAGGCGGGGCCTCAAATCCCAAACCCCGCCCCCTATGTGTGCTTTAAAGCGGAAAAATTTACCCATGTTGAAAAAAAATGAAACGAAACTCATTTACGATTGTAAAAAAGTCTTTTCTCAAAAAATTCACCTTTTCGCCACAATTAGTTGAAAGCACTCTAATGAAAGACCCCCCCCCCTTTAGTTGT</canonical>
            <polymorphic>ATTTATATATTAGACTTCGAAAAATGGGAATTTAAGAAACTCCTTTTTTTTCAGGCCGAAAACTTTGGCGAAGTCATGTCTTCTACACGACGTCGTCAGAATCTGGAGCGAGTATCCGGTGTGTTGGATACAGAGCTAAAACGGATGTACAACAATCAGACAGCAGATGTCATGGTTTCGAATTCCAAGCAAATTGTAATGCTTACTAGAATAAAGACTGAAAACGACATATATTTTTCAGAGTGTTCTTGAATTTATGGAATATCTCTACTACAAAATCAACGATGCTATTAACATAGTTGATGGTGGACAGAATCGAGGATTTCATAGACTCGCAAGGTTTCAGCACAAGATTAAAGATAAATCGGTTAGTTTAAAATCAAAGAAGGCGAAGCCTAATTTTTCACTTTTCAGGGTCTCGCTATGACAATCCTAACTATTCCGTTGTCTGGGGAGAATAACAGTCTACCACCACCACCAAGTTTATCATTGGAAGCATYTACAGCCTATCCGTCACCCCATGGCAGTAATGATTATGATGAATATGAGAAGGTTAGTTCAGGGAAATATTGTAAAATTTGAATTCCTGAAACAGTAATTCAGAATGTTTCTAAAAGTTTTCGAAAATAATTTCCAACCACCAAAATTTACATATTCCTGGTCCAACCCTTCCAAAAGAAAAGAATACATTAACACCTTTTAAAAACAATAACATAATTTTCTTCAAATTAAATATGTACGGCTTTCGCCGTCTAACCGTCCTTATCTGTCCTTTCACAAGTTCAGCAAAATTTTCAGACCTCTTAAGCACACAGGCGGGGCCTCAAATCCCAAACCCCGCCCCCTATGTGTGCTTTAAAGCGGAAAAATTTACCCATGTTGAAAAAAAATGAAACGAAACTCATTTACGATTGTAAAAAAGTCTTTTCTCAAAAAATTCACCTTTTCGCCACAATTAGTTGAAAGCACTCTAATGAAAGACCCCCCCCCCTTTAGTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCGCTATGACAATCCTAACTA</pcr_primer_p1>
		<pcr_primer_p2>AGGAATATGTAAATTTTGGTGGT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TCTCGCTATGACAATCCTAACTATTCCGTTGTCTGGGGAGAATAACAGTCTACCACCACCACCAAGTTTATCATTGGAAGCATCTACAGCCTATCCGTCACCCCATGGCAGTAATGATTATGATGAATATGAGAAGGTTAGTTCAGGGAAATATTGTAAAATTTGAATTCCTGAAACAGTAATTCAGAATGTTTCTAAAAGTTTTCGAAAATAATTTCCAACCACCAAAATTTACATATTCCT</canonical_amplicon>
		<polymorphic_amplicon>TCTCGCTATGACAATCCTAACTATTCCGTTGTCTGGGGAGAATAACAGTCTACCACCACCACCAAGTTTATCATTGGAAGCATYTACAGCCTATCCGTCACCCCATGGCAGTAATGATTATGATGAATATGAGAAGGTTAGTTCAGGGAAATATTGTAAAATTTGAATTCCTGAAACAGTAATTCAGAATGTTTCTAAAAGTTTTCGAAAATAATTTCCAACCACCAAAATTTACATATTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31673</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>182577</contig_pos>
        <strand>+</strand>
        <context>CAGAATGTTT[C/T]TAAAAGTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGGAAATATTGTAAAATTTGAATTCCTGAAACAGTAATTCAGAATGTTT</left_flank>
        <right_flank>TAAAAGTTTTCGAAAATAATTTCCAACCACCAAAATTTACATATTCCTGG</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATCCGGTGTGTTGGATACAGAGCTAAAACGGATGTACAACAATCAGACAGCAGATGTCATGGTTTCGAATTCCAAGCAAATTGTAATGCTTACTAGAATAAAGACTGAAAACGACATATATTTTTCAGAGTGTTCTTGAATTTATGGAATATCTCTACTACAAAATCAACGATGCTATTAACATAGTTGATGGTGGACAGAATCGAGGATTTCATAGACTCGCAAGGTTTCAGCACAAGATTAAAGATAAATCGGTTAGTTTAAAATCAAAGAAGGCGAAGCCTAATTTTTCACTTTTCAGGGTCTCGCTATGACAATCCTAACTATTCCGTTGTCTGGGGAGAATAACAGTCTACCACCACCACCAAGTTTATCATTGGAAGCATCTACAGCCTATCCGTCACCCCATGGCAGTAATGATTATGATGAATATGAGAAGGTTAGTTCAGGGAAATATTGTAAAATTTGAATTCCTGAAACAGTAATTCAGAATGTTTCTAAAAGTTTTCGAAAATAATTTCCAACCACCAAAATTTACATATTCCTGGTCCAACCCTTCCAAAAGAAAAGAATACATTAACACCTTTTAAAAACAATAACATAATTTTCTTCAAATTAAATATGTACGGCTTTCGCCGTCTAACCGTCCTTATCTGTCCTTTCACAAGTTCAGCAAAATTTTCAGACCTCTTAAGCACACAGGCGGGGCCTCAAATCCCAAACCCCGCCCCCTATGTGTGCTTTAAAGCGGAAAAATTTACCCATGTTGAAAAAAAATGAAACGAAACTCATTTACGATTGTAAAAAAGTCTTTTCTCAAAAAATTCACCTTTTCGCCACAATTAGTTGAAAGCACTCTAATGAAAGACCCCCCCCCCTTTAGTTGTCAACTTTGAGTCGATTGATCTCGGTTCTTATGAAGGATATCAAAAAACAGTCAACTAAAAGAATATTTTTGATATTATGATAAACATTTTATCAGTTGACAATTTTTTGAT</canonical>
            <polymorphic>GTATCCGGTGTGTTGGATACAGAGCTAAAACGGATGTACAACAATCAGACAGCAGATGTCATGGTTTCGAATTCCAAGCAAATTGTAATGCTTACTAGAATAAAGACTGAAAACGACATATATTTTTCAGAGTGTTCTTGAATTTATGGAATATCTCTACTACAAAATCAACGATGCTATTAACATAGTTGATGGTGGACAGAATCGAGGATTTCATAGACTCGCAAGGTTTCAGCACAAGATTAAAGATAAATCGGTTAGTTTAAAATCAAAGAAGGCGAAGCCTAATTTTTCACTTTTCAGGGTCTCGCTATGACAATCCTAACTATTCCGTTGTCTGGGGAGAATAACAGTCTACCACCACCACCAAGTTTATCATTGGAAGCATCTACAGCCTATCCGTCACCCCATGGCAGTAATGATTATGATGAATATGAGAAGGTTAGTTCAGGGAAATATTGTAAAATTTGAATTCCTGAAACAGTAATTCAGAATGTTTYTAAAAGTTTTCGAAAATAATTTCCAACCACCAAAATTTACATATTCCTGGTCCAACCCTTCCAAAAGAAAAGAATACATTAACACCTTTTAAAAACAATAACATAATTTTCTTCAAATTAAATATGTACGGCTTTCGCCGTCTAACCGTCCTTATCTGTCCTTTCACAAGTTCAGCAAAATTTTCAGACCTCTTAAGCACACAGGCGGGGCCTCAAATCCCAAACCCCGCCCCCTATGTGTGCTTTAAAGCGGAAAAATTTACCCATGTTGAAAAAAAATGAAACGAAACTCATTTACGATTGTAAAAAAGTCTTTTCTCAAAAAATTCACCTTTTCGCCACAATTAGTTGAAAGCACTCTAATGAAAGACCCCCCCCCCTTTAGTTGTCAACTTTGAGTCGATTGATCTCGGTTCTTATGAAGGATATCAAAAAACAGTCAACTAAAAGAATATTTTTGATATTATGATAAACATTTTATCAGTTGACAATTTTTTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATGAATATGAGAAGGTTAGTTC</pcr_primer_p1>
		<pcr_primer_p2>GAACTTGTGAAAGGACAGATAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGATGAATATGAGAAGGTTAGTTCAGGGAAATATTGTAAAATTTGAATTCCTGAAACAGTAATTCAGAATGTTTCTAAAAGTTTTCGAAAATAATTTCCAACCACCAAAATTTACATATTCCTGGTCCAACCCTTCCAAAAGAAAAGAATACATTAACACCTTTTAAAAACAATAACATAATTTTCTTCAAATTAAATATGTACGGCTTTCGCCGTCTAACCGTCCTTATCTGTCCTTTCACAAGTTC</canonical_amplicon>
		<polymorphic_amplicon>TGATGAATATGAGAAGGTTAGTTCAGGGAAATATTGTAAAATTTGAATTCCTGAAACAGTAATTCAGAATGTTTYTAAAAGTTTTCGAAAATAATTTCCAACCACCAAAATTTACATATTCCTGGTCCAACCCTTCCAAAAGAAAAGAATACATTAACACCTTTTAAAAACAATAACATAATTTTCTTCAAATTAAATATGTACGGCTTTCGCCGTCTAACCGTCCTTATCTGTCCTTTCACAAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31674</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>286681</contig_pos>
        <strand>+</strand>
        <context>CTACTTTCGG[A/T]TGGAAAAACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACTTTAGGGGTTTGTATGTAATTGTGTGTTTTATTTCAACTACTTTCGG</left_flank>
        <right_flank>TGGAAAAACCCTTATTAATTGAGTTTCTCTTAGAAAATATTCCAACAACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAGCACTCTAGCTTCTCTGCGTCTCTCTGAATTTGAAATGGATTACTGTAGCTAAATAAAATAGTATTTTGAAGATTGAAGAAAGAAACTTCGAACTAAAAAACTCAACTAAAAGTATTCAAAGGGGATGTCGGCGGCCAGTTATGAAAGAGAGATATTTCGAAAATTCCCCAGAGACTTATCATCACTCAACCATACACATTTTTGATGGGAAAAGAGAGAAGGGCGGTGGGAAAATAAAGGAACATTTTCTAGAAGGAATTCTAGAATAAATAGAAAAAAAGGACCTAATTTAATCATTATCAACTCAAAGAACTTCAAATAAATCGATTCCTTTTACAAAAAAACGCAATCATCCTCCGAAATCACTTGCGTTTTATTGCCTAATCTATCATAACTTTCACCTCTTTTATCGGGCGAATTTCTGGTTTTTATGGGATCTAAGACAACTTTAGGGGTTTGTATGTAATTGTGTGTTTTATTTCAACTACTTTCGGATGGAAAAACCCTTATTAATTGAGTTTCTCTTAGAAAATATTCCAACAACCTCAAAACGAACTAATCCCAGAAAACCCCATCTCCATGCGGCACCCTTGCCAAAACCGCGCGCGCCGCTTGCAAAAAGGGGCGTTCCCTCGAGAAAACCGTTTATTTTTGCAGTTCTCGTCATCTTTTCGGCTCTTTTTCTCGCGAATTGTTCGATTTTCACACTCAAAAAAAATATTATTTCAGCTAGAACACTCAATTTCGGGTCTTTTCAACCTCTTTAATCATGAAAATCACAAGGATTTTCGGCTTTTTAGCCATTATTTTATTCTGCTCTAGCGGGTTCAGCGCCGGCGCTGCTTCGGACGACAACGAGTTTGCCGAGTTTGAGGAAGATGAGTTTGCAGATAGCGTCGTGGTGACGAACGCGCCAGATGCAAAGCAAGAAGATCGGAAATCCGTGCCGCCCATTGTTCAGGTAGGATTCTAGAATTTTCGTCTTATTTTGACGA</canonical>
            <polymorphic>TAAAGCACTCTAGCTTCTCTGCGTCTCTCTGAATTTGAAATGGATTACTGTAGCTAAATAAAATAGTATTTTGAAGATTGAAGAAAGAAACTTCGAACTAAAAAACTCAACTAAAAGTATTCAAAGGGGATGTCGGCGGCCAGTTATGAAAGAGAGATATTTCGAAAATTCCCCAGAGACTTATCATCACTCAACCATACACATTTTTGATGGGAAAAGAGAGAAGGGCGGTGGGAAAATAAAGGAACATTTTCTAGAAGGAATTCTAGAATAAATAGAAAAAAAGGACCTAATTTAATCATTATCAACTCAAAGAACTTCAAATAAATCGATTCCTTTTACAAAAAAACGCAATCATCCTCCGAAATCACTTGCGTTTTATTGCCTAATCTATCATAACTTTCACCTCTTTTATCGGGCGAATTTCTGGTTTTTATGGGATCTAAGACAACTTTAGGGGTTTGTATGTAATTGTGTGTTTTATTTCAACTACTTTCGGWTGGAAAAACCCTTATTAATTGAGTTTCTCTTAGAAAATATTCCAACAACCTCAAAACGAACTAATCCCAGAAAACCCCATCTCCATGCGGCACCCTTGCCAAAACCGCGCGCGCCGCTTGCAAAAAGGGGCGTTCCCTCGAGAAAACCGTTTATTTTTGCAGTTCTCGTCATCTTTTCGGCTCTTTTTCTCGCGAATTGTTCGATTTTCACACTCAAAAAAAATATTATTTCAGCTAGAACACTCAATTTCGGGTCTTTTCAACCTCTTTAATCATGAAAATCACAAGGATTTTCGGCTTTTTAGCCATTATTTTATTCTGCTCTAGCGGGTTCAGCGCCGGCGCTGCTTCGGACGACAACGAGTTTGCCGAGTTTGAGGAAGATGAGTTTGCAGATAGCGTCGTGGTGACGAACGCGCCAGATGCAAAGCAAGAAGATCGGAAATCCGTGCCGCCCATTGTTCAGGTAGGATTCTAGAATTTTCGTCTTATTTTGACGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>354 333 135 89 59 30</canonical_bands>
                <polymorphic_bands>489 333 89 59 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCTGGTTTTTATGGGATCTA</pcr_primer_p1>
		<pcr_primer_p2>GACGAGAACTGCAAAAATAAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTTCTGGTTTTTATGGGATCTAAGACAACTTTAGGGGTTTGTATGTAATTGTGTGTTTTATTTCAACTACTTTCGGATGGAAAAACCCTTATTAATTGAGTTTCTCTTAGAAAATATTCCAACAACCTCAAAACGAACTAATCCCAGAAAACCCCATCTCCATGCGGCACCCTTGCCAAAACCGCGCGCGCCGCTTGCAAAAAGGGGCGTTCCCTCGAGAAAACCGTTTATTTTTGCAGTTCTCGTC</canonical_amplicon>
		<polymorphic_amplicon>ATTTCTGGTTTTTATGGGATCTAAGACAACTTTAGGGGTTTGTATGTAATTGTGTGTTTTATTTCAACTACTTTCGGWTGGAAAAACCCTTATTAATTGAGTTTCTCTTAGAAAATATTCCAACAACCTCAAAACGAACTAATCCCAGAAAACCCCATCTCCATGCGGCACCCTTGCCAAAACCGCGCGCGCCGCTTGCAAAAAGGGGCGTTCCCTCGAGAAAACCGTTTATTTTTGCAGTTCTCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31675</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>303075</contig_pos>
        <strand></strand>
        <context>CATACCGGCG[C/T]CCTTTCCCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCG</left_flank>
        <right_flank>CCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAAGAGTTATGGCAGAATAAAAAATCGCTGAATTCTTGCAGAAACATGTCTTTCACTCGTTAATTGCTATAATTACAAAGTGTAAATTATAAAAATTTTCAATTTTTCATGCAATTTCAAAAAAGTGAAAGTGAGACATTTTTTGAACAAATGAAAAAAAAACAATTTTTAGCGAATTTTTTCCCATTTTCTTCTGTTTTTGATTGCATATCAAATTTAAATAGAAACTGCCATAAGTCTTTTTCAAAACAAAAACATTGAGTTTCGAAAAATCAGTAATATGTCGTTCAAAATATAAAAAAATATGGAATAATAAAAGAAAAGTACGAAATCGGAAGACCTGAACAAAATCACATCACAATAGAACTTAACTGATACTTCTAGGAACCCCCAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCAT</canonical>
            <polymorphic>GAAAAAGAGTTATGGCAGAATAAAAAATCGCTGAATTCTTGCAGAAACATGTCTTTCACTCGTTAATTGCTATAATTACAAAGTGTAAATTATAAAAATTTTCAATTTTTCATGCAATTTCAAAAAAGTGAAAGTGAGACATTTTTTGAACAAATGAAAAAAAAACAATTTTTAGCGAATTTTTTCCCATTTTCTTCTGTTTTTGATTGCATATCAAATTTAAATAGAAACTGCCATAAGTCTTTTTCAAAACAAAAACATTGAGTTTCGAAAAATCAGTAATATGTCGTTCAAAATATAAAAAAATATGGAATAATAAAAGAAAAGTACGAAATCGGAAGACCTGAACAAAATCACATCACAATAGAACTTAACTGATACTTCTAGGAACCCCCAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGYCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>499 438 33 28 2</canonical_bands>
                <polymorphic_bands>527 438 33 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCGCC</site>
                <isoschizomers>
                    <enzyme>BbeI</enzyme>
                    <enzyme>EgeI</enzyme>
                    <enzyme>EheI</enzyme>
                    <enzyme>KasI</enzyme>
                    <enzyme>Mly113I</enzyme>
                    <enzyme>NarI</enzyme>
                    <enzyme>SfoI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 389 109</canonical_bands>
                <polymorphic_bands>611 389</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGTTCATTTCATCGAGTGC</pcr_primer_p1>
		<pcr_primer_p2>GCATATGTGGAGGATTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>985</pcr_amplicon_size>
		<canonical_amplicon>TTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATT</canonical_amplicon>
		<polymorphic_amplicon>TTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGYCCTTTCCCTGTACCCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31676</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>303167</contig_pos>
        <strand></strand>
        <context>ggatgaatag[T/G]aatcayaagt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAG</left_flank>
        <right_flank>AATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAAATTTTCAATTTTTCATGCAATTTCAAAAAAGTGAAAGTGAGACATTTTTTGAACAAATGAAAAAAAAACAATTTTTAGCGAATTTTTTCCCATTTTCTTCTGTTTTTGATTGCATATCAAATTTAAATAGAAACTGCCATAAGTCTTTTTCAAAACAAAAACATTGAGTTTCGAAAAATCAGTAATATGTCGTTCAAAATATAAAAAAATATGGAATAATAAAAGAAAAGTACGAAATCGGAAGACCTGAACAAAATCACATCACAATAGAACTTAACTGATACTTCTAGGAACCCCCAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTT</canonical>
            <polymorphic>TAAAAATTTTCAATTTTTCATGCAATTTCAAAAAAGTGAAAGTGAGACATTTTTTGAACAAATGAAAAAAAAACAATTTTTAGCGAATTTTTTCCCATTTTCTTCTGTTTTTGATTGCATATCAAATTTAAATAGAAACTGCCATAAGTCTTTTTCAAAACAAAAACATTGAGTTTCGAAAAATCAGTAATATGTCGTTCAAAATATAAAAAAATATGGAATAATAAAAGAAAAGTACGAAATCGGAAGACCTGAACAAAATCACATCACAATAGAACTTAACTGATACTTCTAGGAACCCCCAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGKAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGTTCATTTCATCGAGTGC</pcr_primer_p1>
		<pcr_primer_p2>GCATATGTGGAGGATTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>985</pcr_amplicon_size>
		<canonical_amplicon>TTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTC</canonical_amplicon>
		<polymorphic_amplicon>TTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGKAATCACAAGTTTGGGGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31677</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>303173</contig_pos>
        <strand></strand>
        <context>atagkaatca[C/T]aagtttsggg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCA</left_flank>
        <right_flank>AAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCAATTTTTCATGCAATTTCAAAAAAGTGAAAGTGAGACATTTTTTGAACAAATGAAAAAAAAACAATTTTTAGCGAATTTTTTCCCATTTTCTTCTGTTTTTGATTGCATATCAAATTTAAATAGAAACTGCCATAAGTCTTTTTCAAAACAAAAACATTGAGTTTCGAAAAATCAGTAATATGTCGTTCAAAATATAAAAAAATATGGAATAATAAAAGAAAAGTACGAAATCGGAAGACCTGAACAAAATCACATCACAATAGAACTTAACTGATACTTCTAGGAACCCCCAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAA</canonical>
            <polymorphic>TTTTCAATTTTTCATGCAATTTCAAAAAAGTGAAAGTGAGACATTTTTTGAACAAATGAAAAAAAAACAATTTTTAGCGAATTTTTTCCCATTTTCTTCTGTTTTTGATTGCATATCAAATTTAAATAGAAACTGCCATAAGTCTTTTTCAAAACAAAAACATTGAGTTTCGAAAAATCAGTAATATGTCGTTCAAAATATAAAAAAATATGGAATAATAAAAGAAAAGTACGAAATCGGAAGACCTGAACAAAATCACATCACAATAGAACTTAACTGATACTTCTAGGAACCCCCAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCAYAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>220 163 111 109 87 70 64 41 39 32 15 13 10 6 6 5 5 2 2</canonical_bands>
                <polymorphic_bands>220 178 111 109 87 70 64 41 39 32 13 10 6 6 5 5 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGTTCATTTCATCGAGTGC</pcr_primer_p1>
		<pcr_primer_p2>GCATATGTGGAGGATTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>985</pcr_amplicon_size>
		<canonical_amplicon>TTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCC</canonical_amplicon>
		<polymorphic_amplicon>TTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCAYAAGTTTGGGGTTCGATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31678</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>303180</contig_pos>
        <strand></strand>
        <context>tcayaagttt[G/C]gggttcgatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTT</left_flank>
        <right_flank>GGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCATGCAATTTCAAAAAAGTGAAAGTGAGACATTTTTTGAACAAATGAAAAAAAAACAATTTTTAGCGAATTTTTTCCCATTTTCTTCTGTTTTTGATTGCATATCAAATTTAAATAGAAACTGCCATAAGTCTTTTTCAAAACAAAAACATTGAGTTTCGAAAAATCAGTAATATGTCGTTCAAAATATAAAAAAATATGGAATAATAAAAGAAAAGTACGAAATCGGAAGACCTGAACAAAATCACATCACAATAGAACTTAACTGATACTTCTAGGAACCCCCAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAA</canonical>
            <polymorphic>TTTTTCATGCAATTTCAAAAAAGTGAAAGTGAGACATTTTTTGAACAAATGAAAAAAAAACAATTTTTAGCGAATTTTTTCCCATTTTCTTCTGTTTTTGATTGCATATCAAATTTAAATAGAAACTGCCATAAGTCTTTTTCAAAACAAAAACATTGAGTTTCGAAAAATCAGTAATATGTCGTTCAAAATATAAAAAAATATGGAATAATAAAAGAAAAGTACGAAATCGGAAGACCTGAACAAAATCACATCACAATAGAACTTAACTGATACTTCTAGGAACCCCCAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTSGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGTTCATTTCATCGAGTGC</pcr_primer_p1>
		<pcr_primer_p2>GCATATGTGGAGGATTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>985</pcr_amplicon_size>
		<canonical_amplicon>TTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTG</canonical_amplicon>
		<polymorphic_amplicon>TTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTSGGGTTCGATTCCGTCATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31679</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>303209</contig_pos>
        <strand></strand>
        <context>gtccattttc[C/G]tttttctttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTC</left_flank>
        <right_flank>TTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGACATTTTTTGAACAAATGAAAAAAAAACAATTTTTAGCGAATTTTTTCCCATTTTCTTCTGTTTTTGATTGCATATCAAATTTAAATAGAAACTGCCATAAGTCTTTTTCAAAACAAAAACATTGAGTTTCGAAAAATCAGTAATATGTCGTTCAAAATATAAAAAAATATGGAATAATAAAAGAAAAGTACGAAATCGGAAGACCTGAACAAAATCACATCACAATAGAACTTAACTGATACTTCTAGGAACCCCCAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAA</canonical>
            <polymorphic>TGAGACATTTTTTGAACAAATGAAAAAAAAACAATTTTTAGCGAATTTTTTCCCATTTTCTTCTGTTTTTGATTGCATATCAAATTTAAATAGAAACTGCCATAAGTCTTTTTCAAAACAAAAACATTGAGTTTCGAAAAATCAGTAATATGTCGTTCAAAATATAAAAAAATATGGAATAATAAAAGAAAAGTACGAAATCGGAAGACCTGAACAAAATCACATCACAATAGAACTTAACTGATACTTCTAGGAACCCCCAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCSTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGTTCATTTCATCGAGTGC</pcr_primer_p1>
		<pcr_primer_p2>GCATATGTGGAGGATTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>985</pcr_amplicon_size>
		<canonical_amplicon>TTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGA</canonical_amplicon>
		<polymorphic_amplicon>TTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCSTTTTTCTTTTTTTCTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31680</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>303346</contig_pos>
        <strand></strand>
        <context>ctgctgaaaa[G/A]ccttatctac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAA</left_flank>
        <right_flank>CCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATCAGTAATATGTCGTTCAAAATATAAAAAAATATGGAATAATAAAAGAAAAGTACGAAATCGGAAGACCTGAACAAAATCACATCACAATAGAACTTAACTGATACTTCTAGGAACCCCCAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCA</canonical>
            <polymorphic>AAAATCAGTAATATGTCGTTCAAAATATAAAAAAATATGGAATAATAAAAGAAAAGTACGAAATCGGAAGACCTGAACAAAATCACATCACAATAGAACTTAACTGATACTTCTAGGAACCCCCAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAARCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>291 267 195 162 47 38</canonical_bands>
                <polymorphic_bands>291 267 242 162 38</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGTTCATTTCATCGAGTGC</pcr_primer_p1>
		<pcr_primer_p2>GCATATGTGGAGGATTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>985</pcr_amplicon_size>
		<canonical_amplicon>TTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGT</canonical_amplicon>
		<polymorphic_amplicon>TTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAARCCTTATCTACTCAAAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31681</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>303368</contig_pos>
        <strand></strand>
        <context>caaaatgtca[G/T]tcgaaacccc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCA</left_flank>
        <right_flank>TCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATATAAAAAAATATGGAATAATAAAAGAAAAGTACGAAATCGGAAGACCTGAACAAAATCACATCACAATAGAACTTAACTGATACTTCTAGGAACCCCCAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACACCAAAAGAAAGCCCGT</canonical>
            <polymorphic>AAATATAAAAAAATATGGAATAATAAAAGAAAAGTACGAAATCGGAAGACCTGAACAAAATCACATCACAATAGAACTTAACTGATACTTCTAGGAACCCCCAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAKTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACACCAAAAGAAAGCCCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGTTCATTTCATCGAGTGC</pcr_primer_p1>
		<pcr_primer_p2>GCATATGTGGAGGATTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>985</pcr_amplicon_size>
		<canonical_amplicon>TTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGA</canonical_amplicon>
		<polymorphic_amplicon>TTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAKTCGAAACCCCCCGATAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31682</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>303384</contig_pos>
        <strand></strand>
        <context>accccccgat[A/T]wgatcataty</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGAT</left_flank>
        <right_flank>AGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAATAATAAAAGAAAAGTACGAAATCGGAAGACCTGAACAAAATCACATCACAATAGAACTTAACTGATACTTCTAGGAACCCCCAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACACCAAAAGAAAGCCCGTATTTGAAACTATAAAT</canonical>
            <polymorphic>GGAATAATAAAAGAAAAGTACGAAATCGGAAGACCTGAACAAAATCACATCACAATAGAACTTAACTGATACTTCTAGGAACCCCCAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATWAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACACCAAAAGAAAGCCCGTATTTGAAACTATAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGTTCATTTCATCGAGTGC</pcr_primer_p1>
		<pcr_primer_p2>GCATATGTGGAGGATTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>985</pcr_amplicon_size>
		<canonical_amplicon>TTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGA</canonical_amplicon>
		<polymorphic_amplicon>TTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATWAGATCATATCGGTTGCGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31683</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>303385</contig_pos>
        <strand></strand>
        <context>ccccccgatw[A/T]gatcatatyg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATA</left_flank>
        <right_flank>GATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATAATAAAAGAAAAGTACGAAATCGGAAGACCTGAACAAAATCACATCACAATAGAACTTAACTGATACTTCTAGGAACCCCCAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACACCAAAAGAAAGCCCGTATTTGAAACTATAAATG</canonical>
            <polymorphic>GAATAATAAAAGAAAAGTACGAAATCGGAAGACCTGAACAAAATCACATCACAATAGAACTTAACTGATACTTCTAGGAACCCCCAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAWGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACACCAAAAGAAAGCCCGTATTTGAAACTATAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGTTCATTTCATCGAGTGC</pcr_primer_p1>
		<pcr_primer_p2>GCATATGTGGAGGATTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>985</pcr_amplicon_size>
		<canonical_amplicon>TTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAA</canonical_amplicon>
		<polymorphic_amplicon>TTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAWGATCATATCGGTTGCGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31684</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>303394</contig_pos>
        <strand></strand>
        <context>wwgatcatat[C/T]ggttgcggaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATAT</left_flank>
        <right_flank>GGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAAAGTACGAAATCGGAAGACCTGAACAAAATCACATCACAATAGAACTTAACTGATACTTCTAGGAACCCCCAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACACCAAAAGAAAGCCCGTATTTGAAACTATAAATGATAAAATTT</canonical>
            <polymorphic>AAGAAAAGTACGAAATCGGAAGACCTGAACAAAATCACATCACAATAGAACTTAACTGATACTTCTAGGAACCCCCAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATYGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACACCAAAAGAAAGCCCGTATTTGAAACTATAAATGATAAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGTTCATTTCATCGAGTGC</pcr_primer_p1>
		<pcr_primer_p2>GCATATGTGGAGGATTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>985</pcr_amplicon_size>
		<canonical_amplicon>TTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAA</canonical_amplicon>
		<polymorphic_amplicon>TTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATYGGTTGCGGAACTGTTATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31685</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>303425</contig_pos>
        <strand></strand>
        <context>tcagtcaaga[A/G]gtatgtaaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGA</left_flank>
        <right_flank>GTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCACATCACAATAGAACTTAACTGATACTTCTAGGAACCCCCAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACACCAAAAGAAAGCCCGTATTTGAAACTATAAATGATAAAATTTAGAAAAAATTCTGAGATGAAGGCTGAACATG</canonical>
            <polymorphic>AAATCACATCACAATAGAACTTAACTGATACTTCTAGGAACCCCCAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGARGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACACCAAAAGAAAGCCCGTATTTGAAACTATAAATGATAAAATTTAGAAAAAATTCTGAGATGAAGGCTGAACATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGTTCATTTCATCGAGTGC</pcr_primer_p1>
		<pcr_primer_p2>GCATATGTGGAGGATTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>985</pcr_amplicon_size>
		<canonical_amplicon>TTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGARGTATGTAAATCTATGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31686</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>303462</contig_pos>
        <strand></strand>
        <context>tttgagtgct[C/A]ttsggtgatt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCT</left_flank>
        <right_flank>TTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACCCCCAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACACCAAAAGAAAGCCCGTATTTGAAACTATAAATGATAAAATTTAGAAAAAATTCTGAGATGAAGGCTGAACATGGTTCCCTTGTGAGCGCGCATTTTGAATCCTCCACATA</canonical>
            <polymorphic>GAACCCCCAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTMTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACACCAAAAGAAAGCCCGTATTTGAAACTATAAATGATAAAATTTAGAAAAAATTCTGAGATGAAGGCTGAACATGGTTCCCTTGTGAGCGCGCATTTTGAATCCTCCACATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 418 81</canonical_bands>
                <polymorphic_bands>919 81</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGTTCATTTCATCGAGTGC</pcr_primer_p1>
		<pcr_primer_p2>GCATATGTGGAGGATTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>985</pcr_amplicon_size>
		<canonical_amplicon>TTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGA</canonical_amplicon>
		<polymorphic_amplicon>TTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTMTTGGGTGATTTTCGAAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31687</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>303465</contig_pos>
        <strand></strand>
        <context>gagtgctmtt[G/C]ggtgattttc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTT</left_flank>
        <right_flank>GGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCCCAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACACCAAAAGAAAGCCCGTATTTGAAACTATAAATGATAAAATTTAGAAAAAATTCTGAGATGAAGGCTGAACATGGTTCCCTTGTGAGCGCGCATTTTGAATCCTCCACATATGC</canonical>
            <polymorphic>CCCCCAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTSGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACACCAAAAGAAAGCCCGTATTTGAAACTATAAATGATAAAATTTAGAAAAAATTCTGAGATGAAGGCTGAACATGGTTCCCTTGTGAGCGCGCATTTTGAATCCTCCACATATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGTTCATTTCATCGAGTGC</pcr_primer_p1>
		<pcr_primer_p2>GCATATGTGGAGGATTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>985</pcr_amplicon_size>
		<canonical_amplicon>TTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACACCAAAAGAAAGCCCGTATTTGAAACTATAAATGATAAAATTTAGAAAAAATTCTGAGATGAAGGCTGAACATGGTTCCCTTGTGAGCGCGCATTTTGAATCCTCCACATATGC</canonical_amplicon>
		<polymorphic_amplicon>TTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTSGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACACCAAAAGAAAGCCCGTATTTGAAACTATAAATGATAAAATTTAGAAAAAATTCTGAGATGAAGGCTGAACATGGTTCCCTTGTGAGCGCGCATTTTGAATCCTCCACATATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31688</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>303487</contig_pos>
        <strand></strand>
        <context>aaggactacg[G/A]tccattggag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACG</left_flank>
        <right_flank>TCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACACCAAAAGAAAGCCCGTATTTGAAACTATAAATGATAAAATTTAGAAAAAATTCTGAGATGAAGGCTGAACATGGTTCCCTTGTGAGCGCGCATTTTGAATCCTCCACATATGCTTTGTCTTATTTGGAACACCGC</canonical>
            <polymorphic>ATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGRTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACACCAAAAGAAAGCCCGTATTTGAAACTATAAATGATAAAATTTAGAAAAAATTCTGAGATGAAGGCTGAACATGGTTCCCTTGTGAGCGCGCATTTTGAATCCTCCACATATGCTTTGTCTTATTTGGAACACCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>501 344 155</canonical_bands>
                <polymorphic_bands>845 155</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>501 344 155</canonical_bands>
                <polymorphic_bands>845 155</polymorphic_bands>
            </assay>
            <assay>
                <site>GACNNNNGTC</site>
                <isoschizomers>
                    <enzyme>BoxI</enzyme>
                    <enzyme>BstPAI</enzyme>
                    <enzyme>PshAI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 419 80</canonical_bands>
                <polymorphic_bands>581 419</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGTTCATTTCATCGAGTGC</pcr_primer_p1>
		<pcr_primer_p2>GCATATGTGGAGGATTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>985</pcr_amplicon_size>
		<canonical_amplicon>GGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACACCAAAAGAAAGCCCGTATTTGAAACTATAAATGATAAAATTTAGAAAAAATTCTGAGATGAAGGCTGAACATGGTTCCCTTGTGAGCGCGCATTTTGAATCCTCCACATATGC</canonical_amplicon>
		<polymorphic_amplicon>GRTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACACCAAAAGAAAGCCCGTATTTGAAACTATAAATGATAAAATTTAGAAAAAATTCTGAGATGAAGGCTGAACATGGTTCCCTTGTGAGCGCGCATTTTGAATCCTCCACATATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31689</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>303501</contig_pos>
        <strand></strand>
        <context>attggagttt[T/C]ggaagaaatm</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTT</left_flank>
        <right_flank>GGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACACCAAAAGAAAGCCCGTATTTGAAACTATAAATGATAAAATTTAGAAAAAATTCTGAGATGAAGGCTGAACATGGTTCCCTTGTGAGCGCGCATTTTGAATCCTCCACATATGCTTTGTCTTATTTGGAACACCGCAAAAATGTACTGTT</canonical>
            <polymorphic>CAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTYGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACACCAAAAGAAAGCCCGTATTTGAAACTATAAATGATAAAATTTAGAAAAAATTCTGAGATGAAGGCTGAACATGGTTCCCTTGTGAGCGCGCATTTTGAATCCTCCACATATGCTTTGTCTTATTTGGAACACCGCAAAAATGTACTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>XcmI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGTTCATTTCATCGAGTGC</pcr_primer_p1>
		<pcr_primer_p2>GCATATGTGGAGGATTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>985</pcr_amplicon_size>
		<canonical_amplicon>TTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACACCAAAAGAAAGCCCGTATTTGAAACTATAAATGATAAAATTTAGAAAAAATTCTGAGATGAAGGCTGAACATGGTTCCCTTGTGAGCGCGCATTTTGAATCCTCCACATATGC</canonical_amplicon>
		<polymorphic_amplicon>TYGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACACCAAAAGAAAGCCCGTATTTGAAACTATAAATGATAAAATTTAGAAAAAATTCTGAGATGAAGGCTGAACATGGTTCCCTTGTGAGCGCGCATTTTGAATCCTCCACATATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31690</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>303511</contig_pos>
        <strand></strand>
        <context>yggaagaaat[A/C]acttatttgg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAAT</left_flank>
        <right_flank>ACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAAC</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACACCAAAAGAAAGCCCGTATTTGAAACTATAAATGATAAAATTTAGAAAAAATTCTGAGATGAAGGCTGAACATGGTTCCCTTGTGAGCGCGCATTTTGAATCCTCCACATATGCTTTGTCTTATTTGGAACACCGCAAAAATGTACTGTTTGTTGAATGG</canonical>
            <polymorphic>GGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATMACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACACCAAAAGAAAGCCCGTATTTGAAACTATAAATGATAAAATTTAGAAAAAATTCTGAGATGAAGGCTGAACATGGTTCCCTTGTGAGCGCGCATTTTGAATCCTCCACATATGCTTTGTCTTATTTGGAACACCGCAAAAATGTACTGTTTGTTGAATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGTTCATTTCATCGAGTGC</pcr_primer_p1>
		<pcr_primer_p2>GCATATGTGGAGGATTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>985</pcr_amplicon_size>
		<canonical_amplicon>TAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACACCAAAAGAAAGCCCGTATTTGAAACTATAAATGATAAAATTTAGAAAAAATTCTGAGATGAAGGCTGAACATGGTTCCCTTGTGAGCGCGCATTTTGAATCCTCCACATATGC</canonical_amplicon>
		<polymorphic_amplicon>TMACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACACCAAAAGAAAGCCCGTATTTGAAACTATAAATGATAAAATTTAGAAAAAATTCTGAGATGAAGGCTGAACATGGTTCCCTTGTGAGCGCGCATTTTGAATCCTCCACATATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31691</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>303561</contig_pos>
        <strand></strand>
        <context>cttgtgaaaa[C/G]actcatttta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAA</left_flank>
        <right_flank>ACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACACCAAAAGAAAGCCCGTATTTGAAACTATAAATGATAAAATTTAGAAAAAATTCTGAGATGAAGGCTGAACATGGTTCCCTTGTGAGCGCGCATTTTGAATCCTCCACATATGCTTTGTCTTATTTGGAACACCGCAAAAATGTACTGTTTGTTGAATGGAAGCATGAAGAGTTGACGATCAGGACTGAAACGGAGAGGTGAAGGTTTTT</canonical>
            <polymorphic>CCCCATACCGGCGCCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGTAGTGTGGATGAATAGTAATCACAAGTTTGGGGTTCGATTCCGTCATTGTCCATTTTCCTTTTTCTTTTTTTCTTTGATGTTGGAGGAATGCTTTGAACTTTTCGAAATTCAAAACTATGTTTGCTTTATTATTTCAGTAGGAAAAAAGCTCGAAAAAGATAATTTCTGAAAACTTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAAACCCCCCGATAAGATCATATCGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAAGATTTGAGTGCTCTTGGGTGATTTTCGAAGGACTACGGTCCATTGGAGTTTTGGAAGAAATAACTTATTTGGGATTTCAAAACGGATATAGGCTACAGAATCTTGTGAAAASACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACACCAAAAGAAAGCCCGTATTTGAAACTATAAATGATAAAATTTAGAAAAAATTCTGAGATGAAGGCTGAACATGGTTCCCTTGTGAGCGCGCATTTTGAATCCTCCACATATGCTTTGTCTTATTTGGAACACCGCAAAAATGTACTGTTTGTTGAATGGAAGCATGAAGAGTTGACGATCAGGACTGAAACGGAGAGGTGAAGGTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>163 120 111 89 87 84 69 56 41 37 25 22 20 16 15 13 10 9 6 5 2</canonical_bands>
                <polymorphic_bands>163 120 111 89 87 84 69 56 47 37 25 22 20 16 15 13 10 9 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGTTCATTTCATCGAGTGC</pcr_primer_p1>
		<pcr_primer_p2>GCATATGTGGAGGATTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>985</pcr_amplicon_size>
		<canonical_amplicon>ACACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACACCAAAAGAAAGCCCGTATTTGAAACTATAAATGATAAAATTTAGAAAAAATTCTGAGATGAAGGCTGAACATGGTTCCCTTGTGAGCGCGCATTTTGAATCCTCCACATATGC</canonical_amplicon>
		<polymorphic_amplicon>ASACTCATTTTATCATTTTTATGCGTTTATGCTTCATTTTAGCACATTAAAAATTTTTTCGAAAAATTGAAAAAATCGCCAGTTTCGCCATGAAAAAAAATTTTTTTTGAAAAATGAGGAAACTTTGTCAGATTGCAGAGAAACCTTTAAAATTACGATTGACACTCAAACAATGCCGAAAAACTCCCATTAACCCTTCCAAAAATTTACTCCAAAAGTGAGAAATTAGCATTGAAATCACTTAAAAAGCCCATAACTCGACTTCTAGAAATTTGTGCAGAAAACCAAATACACCAAAAGAAAGCCCGTATTTGAAACTATAAATGATAAAATTTAGAAAAAATTCTGAGATGAAGGCTGAACATGGTTCCCTTGTGAGCGCGCATTTTGAATCCTCCACATATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31692</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>316131</contig_pos>
        <strand></strand>
        <context>tctgaatatg[G/A]tttcgagtta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATTCTAGAAAATTTCCTGATGTGGCTAACTAGGGAACTATCTGAATATG</left_flank>
        <right_flank>TTTCGAGTTACAATCCATGACCTATATCATTAGAAAATCCATAAAATTCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTGAATCCGGAAAACCAGATTCCGGAATCTGGAAATATTGAAATCCAATATCCTGAATCCGCAATTCAGCAACCCTGTATTCGAATATCAATGTATGGGGGGTCAGAATCTCCAAAATTCTTCAAATTCTGGCCTTTCAAAAAGTGGCCACAGAGCTCAAAAACCTCCAAAATCTCACTTTTTGAGAGTGGAAGCATCATTTTGTGGATCGGCCAAAACGTGATTTTTGGAATTTTTCCGGTATCTCGTTTCCGGTTCACGTTGATGGCTCCAAGTTTTTTGTACGTAGGTTTTGAAGGGAGACCTTTATTTTTCGACACCATTTCACGAATATTGACCTAATCAGGTGTTTTTGTACAAACGAAGGGTGCAAGCATCATTTTGTGGAGAACTGTAGATGGGTGTTTCAGGGTATGGAAAAGATGGGATTTCGTTTTTACCGGCGAATTCTAGAAAATTTCCTGATGTGGCTAACTAGGGAACTATCTGAATATGGTTTCGAGTTACAATCCATGACCTATATCATTAGAAAATCCATAAAATTCTGATTCTGAATATGATTTCTGTTTTTGCGAAACGGCCGTGAGCTTCGAGGAAATTAGTTCAAAAGATAATTTTCAGTTGATTTCTAGGCTGTGTTTGNNNNNNNNNNNNTTCTAATGATATAGGTCATGTGTTGTAACTCGGAATCATGTTCAGATAGTTCCCTAGTAAGAGAGAATTAGAGAGAGAGAGAATTGAGGCTAAGAGAATTAACTTGAAAGGTGCAATGTTTCAATTTGAGAATAGAAAGTTGACTGATGGGAAACACTCGAGCTCTCGTGGTGCACTAACCAGGAAAAAATTTGCAGATGTTGTTAAAGTTCAAATGAATGACTGAGAAACCTCAAAATCAGAAAATGTGCATCTAGGTAAAGAAATTGGACGGCGCCATTGAAAAACGCTAAAATTATGAGCTGAAAATACATTTCCGGAACTTTTTCTCGCGGAAAGAGA</canonical>
            <polymorphic>AATTTTGAATCCGGAAAACCAGATTCCGGAATCTGGAAATATTGAAATCCAATATCCTGAATCCGCAATTCAGCAACCCTGTATTCGAATATCAATGTATGGGGGGTCAGAATCTCCAAAATTCTTCAAATTCTGGCCTTTCAAAAAGTGGCCACAGAGCTCAAAAACCTCCAAAATCTCACTTTTTGAGAGTGGAAGCATCATTTTGTGGATCGGCCAAAACGTGATTTTTGGAATTTTTCCGGTATCTCGTTTCCGGTTCACGTTGATGGCTCCAAGTTTTTTGTACGTAGGTTTTGAAGGGAGACCTTTATTTTTCGACACCATTTCACGAATATTGACCTAATCAGGTGTTTTTGTACAAACGAAGGGTGCAAGCATCATTTTGTGGAGAACTGTAGATGGGTGTTTCAGGGTATGGAAAAGATGGGATTTCGTTTTTACCGGCGAATTCTAGAAAATTTCCTGATGTGGCTAACTAGGGAACTATCTGAATATGRTTTCGAGTTACAATCCATGACCTATATCATTAGAAAATCCATAAAATTCTGATTCTGAATATGATTTCTGTTTTTGCGAAACGGCCGTGAGCTTCGAGGAAATTAGTTCAAAAGATAATTTTCAGTTGATTTCTAGGCTGTGTTTGNNNNNNNNNNNNTTCTAATGATATAGGTCATGTGTTGTAACTCGGAATCATGTTCAGATAGTTCCCTAGTAAGAGAGAATTAGAGAGAGAGAGAATTGAGGCTAAGAGAATTAACTTGAAAGGTGCAATGTTTCAATTTGAGAATAGAAAGTTGACTGATGGGAAACACTCGAGCTCTCGTGGTGCACTAACCAGGAAAAAATTTGCAGATGTTGTTAAAGTTCAAATGAATGACTGAGAAACCTCAAAATCAGAAAATGTGCATCTAGGTAAAGAAATTGGACGGCGCCATTGAAAAACGCTAAAATTATGAGCTGAAAATACATTTCCGGAACTTTTTCTCGCGGAAAGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGATGGGATTTCGTTTTTAC</pcr_primer_p1>
		<pcr_primer_p2>GCCTCAATTCTCTCTCTCTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>325</pcr_amplicon_size>
		<canonical_amplicon>AAGATGGGATTTCGTTTTTACCGGCGAATTCTAGAAAATTTCCTGATGTGGCTAACTAGGGAACTATCTGAATATGGTTTCGAGTTACAATCCATGACCTATATCATTAGAAAATCCATAAAATTCTGATTCTGAATATGATTTCTGTTTTTGCGAAACGGCCGTGAGCTTCGAGGAAATTAGTTCAAAAGATAATTTTCAGTTGATTTCTAGGCTGTGTTTGNNNNNNNNNNNNTTCTAATGATATAGGTCATGTGTTGTAACTCGGAATCATGTTCAGATAGTTCCCTAGTAAGAGAGAATTAGAGAGAGAGAGAATTGAGGC</canonical_amplicon>
		<polymorphic_amplicon>AAGATGGGATTTCGTTTTTACCGGCGAATTCTAGAAAATTTCCTGATGTGGCTAACTAGGGAACTATCTGAATATGRTTTCGAGTTACAATCCATGACCTATATCATTAGAAAATCCATAAAATTCTGATTCTGAATATGATTTCTGTTTTTGCGAAACGGCCGTGAGCTTCGAGGAAATTAGTTCAAAAGATAATTTTCAGTTGATTTCTAGGCTGTGTTTGNNNNNNNNNNNNTTCTAATGATATAGGTCATGTGTTGTAACTCGGAATCATGTTCAGATAGTTCCCTAGTAAGAGAGAATTAGAGAGAGAGAGAATTGAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31693</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>325910</contig_pos>
        <strand></strand>
        <context>Tcctctactt[C/G]tgctttcacc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCAGCTCAAAGTATAAGTAAACTCTCTAAGAGCACCCATTCCTCTACTT</left_flank>
        <right_flank>TGCTTTCACCCAGATTATCTCGGTTCCTAAGTGAGATATCCAAAATTTGT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTTGATGGTCTCACCACGAATGCCTGGAATCCATGTAGCAGAGGAAAATATTTTATCAGTGAAGATGGATGGAAGCCAACTGCTATCAATTGTTCTGAAGGATTGGATATTGTTCGAGAGGATGGATTAATGGCAACTGTGACTTTGGAGAAAAGTCAAGTTGGATTTTATGTATGGCATCAGAAATTTCCAACGGTTCCAAAGAATGCGAGAATGCAACAGAAACTTTAATAATAGCCTCTACCTCTACCTTATACTGCAAACTAAATTACTGTAAACACTCTAATAGAACCCCCCCCCATCTACTTAGGGTTTAAATATCTCTGTTCCTGTTAAAGATACCAAAAACTTAACAACTGATAAAATATGTATTATGATAAATGATTATTATGATAAATCATTTAGCAGTTGACAAAATTTTGATACCTCTTATAGGAGCTGAGATAATTCAGCTCAAAGTATAAGTAAACTCTCTAAGAGCACCCATTCCTCTACTTCTGCTTTCACCCAGATTATCTCGGTTCCTAAGTGAGATATCCAAAATTTGTCAATTGATAAAATGTTTGTCATAATATCATAAACATTTTATTAGTTTACAAAAATTTCATATCTCTTATAGGAGGCCGAGATAATTGAGCTCAAAGCGATTGTGTTGTTATAAACTTTAAATTTTCGATGTAATTAAATGATGTAATAAACTAATTTAATTTCGAGATCCAAAACTTTTGTTTCCATTTGTTCAATAAGTCCCTATTTTTGAAAACATTTTCCATTCCGTCTCGTTTCCAAGCCCGTTTCCAAGTAGGTTCTTTGAGCCCAGAGAGACATTGCCTCTTTCACCTAAACGTCATGTTTTTTTTCTCAAAAGAAAAAATTGTGATGTCAAATAAAAAGTCTTCGAATAAATTAGATTTTGCAGACAGGTACCTCTTCTGGTCCATGGTAATCATGTCAACCCCGTGGTGTTCGTTTTTTTTCTAGAGTAGAACGGTCTCAAG</canonical>
            <polymorphic>TCTTTGATGGTCTCACCACGAATGCCTGGAATCCATGTAGCAGAGGAAAATATTTTATCAGTGAAGATGGATGGAAGCCAACTGCTATCAATTGTTCTGAAGGATTGGATATTGTTCGAGAGGATGGATTAATGGCAACTGTGACTTTGGAGAAAAGTCAAGTTGGATTTTATGTATGGCATCAGAAATTTCCAACGGTTCCAAAGAATGCGAGAATGCAACAGAAACTTTAATAATAGCCTCTACCTCTACCTTATACTGCAAACTAAATTACTGTAAACACTCTAATAGAACCCCCCCCCATCTACTTAGGGTTTAAATATCTCTGTTCCTGTTAAAGATACCAAAAACTTAACAACTGATAAAATATGTATTATGATAAATGATTATTATGATAAATCATTTAGCAGTTGACAAAATTTTGATACCTCTTATAGGAGCTGAGATAATTCAGCTCAAAGTATAAGTAAACTCTCTAAGAGCACCCATTCCTCTACTTSTGCTTTCACCCAGATTATCTCGGTTCCTAAGTGAGATATCCAAAATTTGTCAATTGATAAAATGTTTGTCATAATATCATAAACATTTTATTAGTTTACAAAAATTTCATATCTCTTATAGGAGGCCGAGATAATTGAGCTCAAAGCGATTGTGTTGTTATAAACTTTAAATTTTCGATGTAATTAAATGATGTAATAAACTAATTTAATTTCGAGATCCAAAACTTTTGTTTCCATTTGTTCAATAAGTCCCTATTTTTGAAAACATTTTCCATTCCGTCTCGTTTCCAAGCCCGTTTCCAAGTAGGTTCTTTGAGCCCAGAGAGACATTGCCTCTTTCACCTAAACGTCATGTTTTTTTTCTCAAAAGAAAAAATTGTGATGTCAAATAAAAAGTCTTCGAATAAATTAGATTTTGCAGACAGGTACCTCTTCTGGTCCATGGTAATCATGTCAACCCCGTGGTGTTCGTTTTTTTTCTAGAGTAGAACGGTCTCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTCTACCTTATACTGCAAACTAAA</pcr_primer_p1>
		<pcr_primer_p2>TTACATCATTTAATTACATCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>451</pcr_amplicon_size>
		<canonical_amplicon>CCTCTACCTTATACTGCAAACTAAATTACTGTAAACACTCTAATAGAACCCCCCCCCATCTACTTAGGGTTTAAATATCTCTGTTCCTGTTAAAGATACCAAAAACTTAACAACTGATAAAATATGTATTATGATAAATGATTATTATGATAAATCATTTAGCAGTTGACAAAATTTTGATACCTCTTATAGGAGCTGAGATAATTCAGCTCAAAGTATAAGTAAACTCTCTAAGAGCACCCATTCCTCTACTTCTGCTTTCACCCAGATTATCTCGGTTCCTAAGTGAGATATCCAAAATTTGTCAATTGATAAAATGTTTGTCATAATATCATAAACATTTTATTAGTTTACAAAAATTTCATATCTCTTATAGGAGGCCGAGATAATTGAGCTCAAAGCGATTGTGTTGTTATAAACTTTAAATTTTCGATGTAATTAAATGATGTAA</canonical_amplicon>
		<polymorphic_amplicon>CCTCTACCTTATACTGCAAACTAAATTACTGTAAACACTCTAATAGAACCCCCCCCCATCTACTTAGGGTTTAAATATCTCTGTTCCTGTTAAAGATACCAAAAACTTAACAACTGATAAAATATGTATTATGATAAATGATTATTATGATAAATCATTTAGCAGTTGACAAAATTTTGATACCTCTTATAGGAGCTGAGATAATTCAGCTCAAAGTATAAGTAAACTCTCTAAGAGCACCCATTCCTCTACTTSTGCTTTCACCCAGATTATCTCGGTTCCTAAGTGAGATATCCAAAATTTGTCAATTGATAAAATGTTTGTCATAATATCATAAACATTTTATTAGTTTACAAAAATTTCATATCTCTTATAGGAGGCCGAGATAATTGAGCTCAAAGCGATTGTGTTGTTATAAACTTTAAATTTTCGATGTAATTAAATGATGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31694</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>337903</contig_pos>
        <strand></strand>
        <context>ctcagaattt[C/T]agagagaaag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTACACCGAGAAAGCGATTATTGGTACTGAAACTAAAGGCTCAGAATTT</left_flank>
        <right_flank>AGAGAGAAAGGTTCATTAGCTTAAGCGCATGTAGTCAATGATACAAATGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTATATTTCGAATAGGCGATTCCGAATACGACCTTCTTGACTACTTCGACCAACAAGTCGATAAAGAGAACGCCGGCAAATTATCATTGACTATATTTATCATTGACTACAAAGTCTCATTGACTACAAAGTATCATTGACTGCAAAGTTTCATTGACTGTATTTTGTTCCATTTGTATCATTGACTACATATGCGAATGATACTTTCTCTCTGAAATTTGAAATTTCAGTTTCAGTACCAATAATCGCTTTCTCAGTACTGAATCGAAACAAGATGTTTCAGCCTAAGCCTATAATTTAAACAAAAAAACTGAAAATTTTGAAAAAAAATTTCAACGAGAACTGTGGAAGTTTCGTTGATTTTCGCGAGTTTCATTTCTTTTTTGACTGGAATTTTCAGTTTTTTTGTTTAAATTATAGGCTTAGGCTGAAACGTCTTGTTTCGATTTTACACCGAGAAAGCGATTATTGGTACTGAAACTAAAGGCTCAGAATTTCAGAGAGAAAGGTTCATTAGCTTAAGCGCATGTAGTCAATGATACAAATGAAGCAAAATGTAGTCAATGAAACTTTGTAGTCAATGATACTACTGTAGTCACTGATACAAAAAGTAGTCAATGAAATTTTGTAGTCAATGATAAATTGCTGAGAACGCCTAATGCATCTGACCGTTTTTGGTCCTTTTCCTCATCTCGACCCTCTTTCTCTCTCTCCCTCTTTTTTCAATCTGCACTCTGCACTCCTATCCATGATAGTCAATGACACATGCACCAATATTTATGATGTCACACTTTTATTCGATGAAATAAATAAATGAATTACAAAAAAAAATGTCTTCTAAAAGCCGAGGAAAGTTGTGTAGAAGGCGTCGATGTGAATGATGAAAGCCAATATGATCATGTAGTCCGTGAAGAGAGTCATGCAGACAGTCAAGCGCTGAAAAATTATAATTGGCTGGTAAGAAGGAATTTTGGGATATTCCGATTCTCAAGAATTCA</canonical>
            <polymorphic>TTTTATATTTCGAATAGGCGATTCCGAATACGACCTTCTTGACTACTTCGACCAACAAGTCGATAAAGAGAACGCCGGCAAATTATCATTGACTATATTTATCATTGACTACAAAGTCTCATTGACTACAAAGTATCATTGACTGCAAAGTTTCATTGACTGTATTTTGTTCCATTTGTATCATTGACTACATATGCGAATGATACTTTCTCTCTGAAATTTGAAATTTCAGTTTCAGTACCAATAATCGCTTTCTCAGTACTGAATCGAAACAAGATGTTTCAGCCTAAGCCTATAATTTAAACAAAAAAACTGAAAATTTTGAAAAAAAATTTCAACGAGAACTGTGGAAGTTTCGTTGATTTTCGCGAGTTTCATTTCTTTTTTGACTGGAATTTTCAGTTTTTTTGTTTAAATTATAGGCTTAGGCTGAAACGTCTTGTTTCGATTTTACACCGAGAAAGCGATTATTGGTACTGAAACTAAAGGCTCAGAATTTYAGAGAGAAAGGTTCATTAGCTTAAGCGCATGTAGTCAATGATACAAATGAAGCAAAATGTAGTCAATGAAACTTTGTAGTCAATGATACTACTGTAGTCACTGATACAAAAAGTAGTCAATGAAATTTTGTAGTCAATGATAAATTGCTGAGAACGCCTAATGCATCTGACCGTTTTTGGTCCTTTTCCTCATCTCGACCCTCTTTCTCTCTCTCCCTCTTTTTTCAATCTGCACTCTGCACTCCTATCCATGATAGTCAATGACACATGCACCAATATTTATGATGTCACACTTTTATTCGATGAAATAAATAAATGAATTACAAAAAAAAATGTCTTCTAAAAGCCGAGGAAAGTTGTGTAGAAGGCGTCGATGTGAATGATGAAAGCCAATATGATCATGTAGTCCGTGAAGAGAGTCATGCAGACAGTCAAGCGCTGAAAAATTATAATTGGCTGGTAAGAAGGAATTTTGGGATATTCCGATTCTCAAGAATTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>316 278 190 167 25 16 8</canonical_bands>
                <polymorphic_bands>316 278 190 175 25 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAACAAGTCGATAAAGAGAAC</pcr_primer_p1>
		<pcr_primer_p2>AAAAACGGTCAGATGCATTA</pcr_primer_p2>
		<pcr_amplicon_size>627</pcr_amplicon_size>
		<canonical_amplicon>CCAACAAGTCGATAAAGAGAACGCCGGCAAATTATCATTGACTATATTTATCATTGACTACAAAGTCTCATTGACTACAAAGTATCATTGACTGCAAAGTTTCATTGACTGTATTTTGTTCCATTTGTATCATTGACTACATATGCGAATGATACTTTCTCTCTGAAATTTGAAATTTCAGTTTCAGTACCAATAATCGCTTTCTCAGTACTGAATCGAAACAAGATGTTTCAGCCTAAGCCTATAATTTAAACAAAAAAACTGAAAATTTTGAAAAAAAATTTCAACGAGAACTGTGGAAGTTTCGTTGATTTTCGCGAGTTTCATTTCTTTTTTGACTGGAATTTTCAGTTTTTTTGTTTAAATTATAGGCTTAGGCTGAAACGTCTTGTTTCGATTTTACACCGAGAAAGCGATTATTGGTACTGAAACTAAAGGCTCAGAATTTCAGAGAGAAAGGTTCATTAGCTTAAGCGCATGTAGTCAATGATACAAATGAAGCAAAATGTAGTCAATGAAACTTTGTAGTCAATGATACTACTGTAGTCACTGATACAAAAAGTAGTCAATGAAATTTTGTAGTCAATGATAAATTGCTGAGAACGCCTAATGCATCTGACCGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CCAACAAGTCGATAAAGAGAACGCCGGCAAATTATCATTGACTATATTTATCATTGACTACAAAGTCTCATTGACTACAAAGTATCATTGACTGCAAAGTTTCATTGACTGTATTTTGTTCCATTTGTATCATTGACTACATATGCGAATGATACTTTCTCTCTGAAATTTGAAATTTCAGTTTCAGTACCAATAATCGCTTTCTCAGTACTGAATCGAAACAAGATGTTTCAGCCTAAGCCTATAATTTAAACAAAAAAACTGAAAATTTTGAAAAAAAATTTCAACGAGAACTGTGGAAGTTTCGTTGATTTTCGCGAGTTTCATTTCTTTTTTGACTGGAATTTTCAGTTTTTTTGTTTAAATTATAGGCTTAGGCTGAAACGTCTTGTTTCGATTTTACACCGAGAAAGCGATTATTGGTACTGAAACTAAAGGCTCAGAATTTYAGAGAGAAAGGTTCATTAGCTTAAGCGCATGTAGTCAATGATACAAATGAAGCAAAATGTAGTCAATGAAACTTTGTAGTCAATGATACTACTGTAGTCACTGATACAAAAAGTAGTCAATGAAATTTTGTAGTCAATGATAAATTGCTGAGAACGCCTAATGCATCTGACCGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31695</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>362110</contig_pos>
        <strand></strand>
        <context>ACGAGACCAC[T/G]KGAGWWGGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCAC</left_flank>
        <right_flank>GGAGTAGGAAGGTGGAGAGGGTGTATAAGAGGCGCCACTTGTTGCGAAAG</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATAAAGCCACCAATATTTTATCAGTTGACAAATTTTTGATATCTCTCAAAGCAACCGAGATAATTGAGCTTGATGGTTTGATACCGTAAAATACGTTATCTTTGCAGGGTCTGCAACCGCATGGACTTTTTGGACTTGGAGAGGAATTCAAAGACACTTGTCTAGACGATACGTGTAGCTCTTTGCTGGCACTTCAGTTGCTAACCCACACTTTGATTAAACCGGTTCCCAAGTTTTTGAAAGATGTTGTGATACCGTATGAAAAAAAGGAGAGAAGCATTTTCAGTCTCACAATTCCAGATACTTTGTAAAACTATTCCGTCTTCGAATGTACACAAGCAGAACTGAAGCAAAACGGGTTGAAGCTGAAGAAGATGACCAGGCCAATGTTTTAGTGAGGTAAAAAATTAGAAAAACGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACTGGAGTAGGAAGGTGGAGAGGGTGTATAAGAGGCGCCACTTGTTGCGAAAGATAAGAGGAGGGAATAATTGACTTGAGCTTGCAGAGAATGGTTGAAGCCAAGTGCTGGAGACTTCGTTTTATGGGAGATGAATGAGAAAATTATAATGTTCGGGACCACCATGATGTTTGCAAGTCTATTCCCTCTCTCACCACTTCTTGCTCTAATCATTGGTTTTGTGGATATGCGAATCGACGCGATCGTTTGATTTGGTTCAATCGGAAGCCGATTCCATTGATTACAAATGGTAATTTCCATTGGGATTACTGTAGAAAACAATAATTTTATTTTTAGGAATCGGAATATGGCTTCCAATTCTCACTTTCCTACAGTACTGCGCAGTTTTCACGAATGCTTTCATTGTTGCATTCACCTCGGGTTTCTGCTCGACATTCTTTGCCGATGGAGAGTATTGTACGGTTCAGAATCGCTTAATTATTGTTATAGTTTTCCAGGTTTGT</canonical>
            <polymorphic>TCATAAAGCCACCAATATTTTATCAGTTGACAAATTTTTGATATCTCTCAAAGCAACCGAGATAATTGAGCTTGATGGTTTGATACCGTAAAATACGTTATCTTTGCAGGGTCTGCAACCGCATGGACTTTTTGGACTTGGAGAGGAATTCAAAGACACTTGTCTAGACGATACGTGTAGCTCTTTGCTGGCACTTCAGTTGCTAACCCACACTTTGATTAAACCGGTTCCCAAGTTTTTGAAAGATGTTGTGATACCGTATGAAAAAAAGGAGAGAAGCATTTTCAGTCTCACAATTCCAGATACTTTGTAAAACTATTCCGTCTTCGAATGTACACAAGCAGAACTGAAGCAAAACGGGTTGAAGCTGAAGAAGATGACCAGGCCAATGTTTTAGTGAGGTAAAAAATTAGAAAAACGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACKGGAGTAGGAAGGTGGAGAGGGTGTATAAGAGGCGCCACTTGTTGCGAAAGATAAGAGGAGGGAATAATTGACTTGAGCTTGCAGAGAATGGTTGAAGCCAAGTGCTGGAGACTTCGTTTTATGGGAGATGAATGAGAAAATTATAATGTTCGGGACCACCATGATGTTTGCAAGTCTATTCCCTCTCTCACCACTTCTTGCTCTAATCATTGGTTTTGTGGATATGCGAATCGACGCGATCGTTTGATTTGGTTCAATCGGAAGCCGATTCCATTGATTACAAATGGTAATTTCCATTGGGATTACTGTAGAAAACAATAATTTTATTTTTAGGAATCGGAATATGGCTTCCAATTCTCACTTTCCTACAGTACTGCGCAGTTTTCACGAATGCTTTCATTGTTGCATTCACCTCGGGTTTCTGCTCGACATTCTTTGCCGATGGAGAGTATTGTACGGTTCAGAATCGCTTAATTATTGTTATAGTTTTCCAGGTTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>XcmI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGTACACAAGCAGAACTGAAG</pcr_primer_p1>
		<pcr_primer_p2>AAGTCAATTATTCCCTCCTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATGTACACAAGCAGAACTGAAGCAAAACGGGTTGAAGCTGAAGAAGATGACCAGGCCAATGTTTTAGTGAGGTAAAAAATTAGAAAAACGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACTGGAGTAGGAAGGTGGAGAGGGTGTATAAGAGGCGCCACTTGTTGCGAAAGATAAGAGGAGGGAATAATTGACTT</canonical_amplicon>
		<polymorphic_amplicon>AATGTACACAAGCAGAACTGAAGCAAAACGGGTTGAAGCTGAAGAAGATGACCAGGCCAATGTTTTAGTGAGGTAAAAAATTAGAAAAACGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACKGGAGTAGGAAGGTGGAGAGGGTGTATAAGAGGCGCCACTTGTTGCGAAAGATAAGAGGAGGGAATAATTGACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31696</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>362111</contig_pos>
        <strand>+</strand>
        <context>CGAGACCACK[G/T]GAGWWGGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACT</left_flank>
        <right_flank>GAGTAGGAAGGTGGAGAGGGTGTATAAGAGGCGCCACTTGTTGCGAAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATAAAGCCACCAATATTTTATCAGTTGACAAATTTTTGATATCTCTCAAAGCAACCGAGATAATTGAGCTTGATGGTTTGATACCGTAAAATACGTTATCTTTGCAGGGTCTGCAACCGCATGGACTTTTTGGACTTGGAGAGGAATTCAAAGACACTTGTCTAGACGATACGTGTAGCTCTTTGCTGGCACTTCAGTTGCTAACCCACACTTTGATTAAACCGGTTCCCAAGTTTTTGAAAGATGTTGTGATACCGTATGAAAAAAAGGAGAGAAGCATTTTCAGTCTCACAATTCCAGATACTTTGTAAAACTATTCCGTCTTCGAATGTACACAAGCAGAACTGAAGCAAAACGGGTTGAAGCTGAAGAAGATGACCAGGCCAATGTTTTAGTGAGGTAAAAAATTAGAAAAACGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACTGGAGTAGGAAGGTGGAGAGGGTGTATAAGAGGCGCCACTTGTTGCGAAAGATAAGAGGAGGGAATAATTGACTTGAGCTTGCAGAGAATGGTTGAAGCCAAGTGCTGGAGACTTCGTTTTATGGGAGATGAATGAGAAAATTATAATGTTCGGGACCACCATGATGTTTGCAAGTCTATTCCCTCTCTCACCACTTCTTGCTCTAATCATTGGTTTTGTGGATATGCGAATCGACGCGATCGTTTGATTTGGTTCAATCGGAAGCCGATTCCATTGATTACAAATGGTAATTTCCATTGGGATTACTGTAGAAAACAATAATTTTATTTTTAGGAATCGGAATATGGCTTCCAATTCTCACTTTCCTACAGTACTGCGCAGTTTTCACGAATGCTTTCATTGTTGCATTCACCTCGGGTTTCTGCTCGACATTCTTTGCCGATGGAGAGTATTGTACGGTTCAGAATCGCTTAATTATTGTTATAGTTTTCCAGGTTTGTC</canonical>
            <polymorphic>CATAAAGCCACCAATATTTTATCAGTTGACAAATTTTTGATATCTCTCAAAGCAACCGAGATAATTGAGCTTGATGGTTTGATACCGTAAAATACGTTATCTTTGCAGGGTCTGCAACCGCATGGACTTTTTGGACTTGGAGAGGAATTCAAAGACACTTGTCTAGACGATACGTGTAGCTCTTTGCTGGCACTTCAGTTGCTAACCCACACTTTGATTAAACCGGTTCCCAAGTTTTTGAAAGATGTTGTGATACCGTATGAAAAAAAGGAGAGAAGCATTTTCAGTCTCACAATTCCAGATACTTTGTAAAACTATTCCGTCTTCGAATGTACACAAGCAGAACTGAAGCAAAACGGGTTGAAGCTGAAGAAGATGACCAGGCCAATGTTTTAGTGAGGTAAAAAATTAGAAAAACGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACTKGAGTAGGAAGGTGGAGAGGGTGTATAAGAGGCGCCACTTGTTGCGAAAGATAAGAGGAGGGAATAATTGACTTGAGCTTGCAGAGAATGGTTGAAGCCAAGTGCTGGAGACTTCGTTTTATGGGAGATGAATGAGAAAATTATAATGTTCGGGACCACCATGATGTTTGCAAGTCTATTCCCTCTCTCACCACTTCTTGCTCTAATCATTGGTTTTGTGGATATGCGAATCGACGCGATCGTTTGATTTGGTTCAATCGGAAGCCGATTCCATTGATTACAAATGGTAATTTCCATTGGGATTACTGTAGAAAACAATAATTTTATTTTTAGGAATCGGAATATGGCTTCCAATTCTCACTTTCCTACAGTACTGCGCAGTTTTCACGAATGCTTTCATTGTTGCATTCACCTCGGGTTTCTGCTCGACATTCTTTGCCGATGGAGAGTATTGTACGGTTCAGAATCGCTTAATTATTGTTATAGTTTTCCAGGTTTGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>XcmI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGTACACAAGCAGAACTGAAG</pcr_primer_p1>
		<pcr_primer_p2>AAGTCAATTATTCCCTCCTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATGTACACAAGCAGAACTGAAGCAAAACGGGTTGAAGCTGAAGAAGATGACCAGGCCAATGTTTTAGTGAGGTAAAAAATTAGAAAAACGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACTGGAGTAGGAAGGTGGAGAGGGTGTATAAGAGGCGCCACTTGTTGCGAAAGATAAGAGGAGGGAATAATTGACTT</canonical_amplicon>
		<polymorphic_amplicon>AATGTACACAAGCAGAACTGAAGCAAAACGGGTTGAAGCTGAAGAAGATGACCAGGCCAATGTTTTAGTGAGGTAAAAAATTAGAAAAACGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACTKGAGTAGGAAGGTGGAGAGGGTGTATAAGAGGCGCCACTTGTTGCGAAAGATAAGAGGAGGGAATAATTGACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31697</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>362116</contig_pos>
        <strand>+</strand>
        <context>CCACKKGAGW[A/T]GGAAGGTGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACTGGAGT</left_flank>
        <right_flank>GGAAGGTGGAGAGGGTGTATAAGAGGCGCCACTTGTTGCGAAAGATAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCACCAATATTTTATCAGTTGACAAATTTTTGATATCTCTCAAAGCAACCGAGATAATTGAGCTTGATGGTTTGATACCGTAAAATACGTTATCTTTGCAGGGTCTGCAACCGCATGGACTTTTTGGACTTGGAGAGGAATTCAAAGACACTTGTCTAGACGATACGTGTAGCTCTTTGCTGGCACTTCAGTTGCTAACCCACACTTTGATTAAACCGGTTCCCAAGTTTTTGAAAGATGTTGTGATACCGTATGAAAAAAAGGAGAGAAGCATTTTCAGTCTCACAATTCCAGATACTTTGTAAAACTATTCCGTCTTCGAATGTACACAAGCAGAACTGAAGCAAAACGGGTTGAAGCTGAAGAAGATGACCAGGCCAATGTTTTAGTGAGGTAAAAAATTAGAAAAACGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACTGGAGTAGGAAGGTGGAGAGGGTGTATAAGAGGCGCCACTTGTTGCGAAAGATAAGAGGAGGGAATAATTGACTTGAGCTTGCAGAGAATGGTTGAAGCCAAGTGCTGGAGACTTCGTTTTATGGGAGATGAATGAGAAAATTATAATGTTCGGGACCACCATGATGTTTGCAAGTCTATTCCCTCTCTCACCACTTCTTGCTCTAATCATTGGTTTTGTGGATATGCGAATCGACGCGATCGTTTGATTTGGTTCAATCGGAAGCCGATTCCATTGATTACAAATGGTAATTTCCATTGGGATTACTGTAGAAAACAATAATTTTATTTTTAGGAATCGGAATATGGCTTCCAATTCTCACTTTCCTACAGTACTGCGCAGTTTTCACGAATGCTTTCATTGTTGCATTCACCTCGGGTTTCTGCTCGACATTCTTTGCCGATGGAGAGTATTGTACGGTTCAGAATCGCTTAATTATTGTTATAGTTTTCCAGGTTTGTCTATTT</canonical>
            <polymorphic>AGCCACCAATATTTTATCAGTTGACAAATTTTTGATATCTCTCAAAGCAACCGAGATAATTGAGCTTGATGGTTTGATACCGTAAAATACGTTATCTTTGCAGGGTCTGCAACCGCATGGACTTTTTGGACTTGGAGAGGAATTCAAAGACACTTGTCTAGACGATACGTGTAGCTCTTTGCTGGCACTTCAGTTGCTAACCCACACTTTGATTAAACCGGTTCCCAAGTTTTTGAAAGATGTTGTGATACCGTATGAAAAAAAGGAGAGAAGCATTTTCAGTCTCACAATTCCAGATACTTTGTAAAACTATTCCGTCTTCGAATGTACACAAGCAGAACTGAAGCAAAACGGGTTGAAGCTGAAGAAGATGACCAGGCCAATGTTTTAGTGAGGTAAAAAATTAGAAAAACGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACTGGAGTWGGAAGGTGGAGAGGGTGTATAAGAGGCGCCACTTGTTGCGAAAGATAAGAGGAGGGAATAATTGACTTGAGCTTGCAGAGAATGGTTGAAGCCAAGTGCTGGAGACTTCGTTTTATGGGAGATGAATGAGAAAATTATAATGTTCGGGACCACCATGATGTTTGCAAGTCTATTCCCTCTCTCACCACTTCTTGCTCTAATCATTGGTTTTGTGGATATGCGAATCGACGCGATCGTTTGATTTGGTTCAATCGGAAGCCGATTCCATTGATTACAAATGGTAATTTCCATTGGGATTACTGTAGAAAACAATAATTTTATTTTTAGGAATCGGAATATGGCTTCCAATTCTCACTTTCCTACAGTACTGCGCAGTTTTCACGAATGCTTTCATTGTTGCATTCACCTCGGGTTTCTGCTCGACATTCTTTGCCGATGGAGAGTATTGTACGGTTCAGAATCGCTTAATTATTGTTATAGTTTTCCAGGTTTGTCTATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTACACAAGCAGAACTGAAG</pcr_primer_p1>
		<pcr_primer_p2>AAGTCAATTATTCCCTCCTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATGTACACAAGCAGAACTGAAGCAAAACGGGTTGAAGCTGAAGAAGATGACCAGGCCAATGTTTTAGTGAGGTAAAAAATTAGAAAAACGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACTGGAGTAGGAAGGTGGAGAGGGTGTATAAGAGGCGCCACTTGTTGCGAAAGATAAGAGGAGGGAATAATTGACTT</canonical_amplicon>
		<polymorphic_amplicon>AATGTACACAAGCAGAACTGAAGCAAAACGGGTTGAAGCTGAAGAAGATGACCAGGCCAATGTTTTAGTGAGGTAAAAAATTAGAAAAACGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACTGGAGTWGGAAGGTGGAGAGGGTGTATAAGAGGCGCCACTTGTTGCGAAAGATAAGAGGAGGGAATAATTGACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31698</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>381221</contig_pos>
        <strand></strand>
        <context>AAAAATCTGG[G/T]ACACTGAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTAGGTTTCAGATAAATTCCATGTTGTTAGATGACGGAAAAAAAATCTGG</left_flank>
        <right_flank>ACACTGAAAATCTAAAAATTGAAAACTTGAAAATTTCGAATTCCAGAATA</right_flank>
        <qual_score>35</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGATTGGATATGACAATTCGAAGCCTGACAACAAGCCAGTTCTTCCGCTTTCGACGTCTTCTGAAATGGTGACATTCTTCTTGAAGACTGGAAGTGTCACGACTCTCCGTGCATCTGGAACTGAGCCCAAGATCAAGTACTACATCGAACTGATCACTCCACCAGGAAAGACTCAAAACGATTTGGAAAGTGTCATCTCGGAGCTAGATCAGCTGGAGAAGGATGTCGTTGCCACGTTGCTCCGTCCACAACAGTTCGGATTGATTCCTCGCAAATAACTTGATTTTTTGAAGAAATTATTGCTGTGCATGTTCTGTTTTATTAGCCCCGCCCCTTTGATATAACTATACATTCCTCTCGTATTTAGTAGTCAGCATTTATTGTGATAAAAATTGTCCTTTTTTCTAGATCTTTATAACAAAGCATTTGTTGAAAATGTTGAATTTTCTAGGTTTCAGATAAATTCCATGTTGTTAGATGACGGAAAAAAAATCTGGGACACTGAAAATCTAAAAATTGAAAACTTGAAAATTTCGAATTCCAGAATATATAAATATCATAATCAGAAAATCTGGAAATATGAGACTCTGAGAATCTAAAAATATCAAAATCTGAGGATTTTAGAGTTTTCAGAATCTGAAAATCTGAAAATCTCAGAGTTTGAAAATATCTGAAAATCTTAAAATCGCTGAATTTTAAAATGAAAATCATGAAATCTGGGAATCTGAAAATCACAGAGTCTTAAAAGCTGAAAATCTAAAAATTTGGAAATCTGAAAAACTGAAAATCTCAGAATTTGGAAATATCATAACATCAGCATCTCATAATCTGAAAATCAGGGAAATCTAATATTTCAGAATCTGAAAATCTGAAAATTCGAAATTTTCTATATCTCAAAGATCAGAATCTCAGAATTGAAAGACTGAGAATCCTGAGGGTTCAGAAGTTTCAGAGAAAACCAAGAAATCGTTGAAATCAAAAAATCGAAATAGTCGGAG</canonical>
            <polymorphic>GACGATTGGATATGACAATTCGAAGCCTGACAACAAGCCAGTTCTTCCGCTTTCGACGTCTTCTGAAATGGTGACATTCTTCTTGAAGACTGGAAGTGTCACGACTCTCCGTGCATCTGGAACTGAGCCCAAGATCAAGTACTACATCGAACTGATCACTCCACCAGGAAAGACTCAAAACGATTTGGAAAGTGTCATCTCGGAGCTAGATCAGCTGGAGAAGGATGTCGTTGCCACGTTGCTCCGTCCACAACAGTTCGGATTGATTCCTCGCAAATAACTTGATTTTTTGAAGAAATTATTGCTGTGCATGTTCTGTTTTATTAGCCCCGCCCCTTTGATATAACTATACATTCCTCTCGTATTTAGTAGTCAGCATTTATTGTGATAAAAATTGTCCTTTTTTCTAGATCTTTATAACAAAGCATTTGTTGAAAATGTTGAATTTTCTAGGTTTCAGATAAATTCCATGTTGTTAGATGACGGAAAAAAAATCTGGKACACTGAAAATCTAAAAATTGAAAACTTGAAAATTTCGAATTCCAGAATATATAAATATCATAATCAGAAAATCTGGAAATATGAGACTCTGAGAATCTAAAAATATCAAAATCTGAGGATTTTAGAGTTTTCAGAATCTGAAAATCTGAAAATCTCAGAGTTTGAAAATATCTGAAAATCTTAAAATCGCTGAATTTTAAAATGAAAATCATGAAATCTGGGAATCTGAAAATCACAGAGTCTTAAAAGCTGAAAATCTAAAAATTTGGAAATCTGAAAAACTGAAAATCTCAGAATTTGGAAATATCATAACATCAGCATCTCATAATCTGAAAATCAGGGAAATCTAATATTTCAGAATCTGAAAATCTGAAAATTCGAAATTTTCTATATCTCAAAGATCAGAATCTCAGAATTGAAAGACTGAGAATCCTGAGGGTTCAGAAGTTTCAGAGAAAACCAAGAAATCGTTGAAATCAAAAAATCGAAATAGTCGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCCCTTTGATATAACTATACATT</pcr_primer_p1>
		<pcr_primer_p2>ATTTCCAGATTTTCTGATTATGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCCCCTTTGATATAACTATACATTCCTCTCGTATTTAGTAGTCAGCATTTATTGTGATAAAAATTGTCCTTTTTTCTAGATCTTTATAACAAAGCATTTGTTGAAAATGTTGAATTTTCTAGGTTTCAGATAAATTCCATGTTGTTAGATGACGGAAAAAAAATCTGGGACACTGAAAATCTAAAAATTGAAAACTTGAAAATTTCGAATTCCAGAATATATAAATATCATAATCAGAAAATCTGGAAAT</canonical_amplicon>
		<polymorphic_amplicon>GCCCCTTTGATATAACTATACATTCCTCTCGTATTTAGTAGTCAGCATTTATTGTGATAAAAATTGTCCTTTTTTCTAGATCTTTATAACAAAGCATTTGTTGAAAATGTTGAATTTTCTAGGTTTCAGATAAATTCCATGTTGTTAGATGACGGAAAAAAAATCTGGKACACTGAAAATCTAAAAATTGAAAACTTGAAAATTTCGAATTCCAGAATATATAAATATCATAATCAGAAAATCTGGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31699</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>381540</contig_pos>
        <strand></strand>
        <context>CATAACATCA[G/A]CATCTCATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGAAATCTGAAAAACTGAAAATCTCAGAATTTGGAAATATCATAACATCA</left_flank>
        <right_flank>CATCTCATAATCTGAAAATCAGGGAAATCTAATATTTCAGAATCTGAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATTAGCCCCGCCCCTTTGATATAACTATACATTCCTCTCGTATTTAGTAGTCAGCATTTATTGTGATAAAAATTGTCCTTTTTTCTAGATCTTTATAACAAAGCATTTGTTGAAAATGTTGAATTTTCTAGGTTTCAGATAAATTCCATGTTGTTAGATGACGGAAAAAAAATCTGGGACACTGAAAATCTAAAAATTGAAAACTTGAAAATTTCGAATTCCAGAATATATAAATATCATAATCAGAAAATCTGGAAATATGAGACTCTGAGAATCTAAAAATATCAAAATCTGAGGATTTTAGAGTTTTCAGAATCTGAAAATCTGAAAATCTCAGAGTTTGAAAATATCTGAAAATCTTAAAATCGCTGAATTTTAAAATGAAAATCATGAAATCTGGGAATCTGAAAATCACAGAGTCTTAAAAGCTGAAAATCTAAAAATTTGGAAATCTGAAAAACTGAAAATCTCAGAATTTGGAAATATCATAACATCAGCATCTCATAATCTGAAAATCAGGGAAATCTAATATTTCAGAATCTGAAAATCTGAAAATTCGAAATTTTCTATATCTCAAAGATCAGAATCTCAGAATTGAAAGACTGAGAATCCTGAGGGTTCAGAAGTTTCAGAGAAAACCAAGAAATCGTTGAAATCAAAAAATCGAAATAGTCGGAGAAAACAAAAAAAGGGGAAACTTCCGGGAAATAAAATTAAGAAGCTTCTCTGATGAATGAAAATTCTGGAAAACCGGCAAAATCCAAAAAAAAAACTGAAATGTCTAATAAATCATCTTTAGAGGCCTACGAAATATCTGAAACGTTATTGGATAGACCTTGATATTTTCAATCTGATATTTTCAGACAAATAGAGAAATTCTGGATTACTTTTTCAGCACTTCAAAATACCTTCCTCTGAGAAATTCAAAATTTAGAAACCTCATTAATTTTTCAGATTTTCAGTTTTTCAATACTTCAAGTTTCCAACTTTTCCAGTT</canonical>
            <polymorphic>TTTATTAGCCCCGCCCCTTTGATATAACTATACATTCCTCTCGTATTTAGTAGTCAGCATTTATTGTGATAAAAATTGTCCTTTTTTCTAGATCTTTATAACAAAGCATTTGTTGAAAATGTTGAATTTTCTAGGTTTCAGATAAATTCCATGTTGTTAGATGACGGAAAAAAAATCTGGGACACTGAAAATCTAAAAATTGAAAACTTGAAAATTTCGAATTCCAGAATATATAAATATCATAATCAGAAAATCTGGAAATATGAGACTCTGAGAATCTAAAAATATCAAAATCTGAGGATTTTAGAGTTTTCAGAATCTGAAAATCTGAAAATCTCAGAGTTTGAAAATATCTGAAAATCTTAAAATCGCTGAATTTTAAAATGAAAATCATGAAATCTGGGAATCTGAAAATCACAGAGTCTTAAAAGCTGAAAATCTAAAAATTTGGAAATCTGAAAAACTGAAAATCTCAGAATTTGGAAATATCATAACATCARCATCTCATAATCTGAAAATCAGGGAAATCTAATATTTCAGAATCTGAAAATCTGAAAATTCGAAATTTTCTATATCTCAAAGATCAGAATCTCAGAATTGAAAGACTGAGAATCCTGAGGGTTCAGAAGTTTCAGAGAAAACCAAGAAATCGTTGAAATCAAAAAATCGAAATAGTCGGAGAAAACAAAAAAAGGGGAAACTTCCGGGAAATAAAATTAAGAAGCTTCTCTGATGAATGAAAATTCTGGAAAACCGGCAAAATCCAAAAAAAAAACTGAAATGTCTAATAAATCATCTTTAGAGGCCTACGAAATATCTGAAACGTTATTGGATAGACCTTGATATTTTCAATCTGATATTTTCAGACAAATAGAGAAATTCTGGATTACTTTTTCAGCACTTCAAAATACCTTCCTCTGAGAAATTCAAAATTTAGAAACCTCATTAATTTTTCAGATTTTCAGTTTTTCAATACTTCAAGTTTCCAACTTTTCCAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATCTGAAAATCACAGAGTCTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTCTTGGTTTTCTCTGAAACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAATCTGAAAATCACAGAGTCTTAAAAGCTGAAAATCTAAAAATTTGGAAATCTGAAAAACTGAAAATCTCAGAATTTGGAAATATCATAACATCAGCATCTCATAATCTGAAAATCAGGGAAATCTAATATTTCAGAATCTGAAAATCTGAAAATTCGAAATTTTCTATATCTCAAAGATCAGAATCTCAGAATTGAAAGACTGAGAATCCTGAGGGTTCAGAAGTTTCAGAGAAAACCAAGAAAT</canonical_amplicon>
		<polymorphic_amplicon>GAATCTGAAAATCACAGAGTCTTAAAAGCTGAAAATCTAAAAATTTGGAAATCTGAAAAACTGAAAATCTCAGAATTTGGAAATATCATAACATCARCATCTCATAATCTGAAAATCAGGGAAATCTAATATTTCAGAATCTGAAAATCTGAAAATTCGAAATTTTCTATATCTCAAAGATCAGAATCTCAGAATTGAAAGACTGAGAATCCTGAGGGTTCAGAAGTTTCAGAGAAAACCAAGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31700</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>381607</contig_pos>
        <strand></strand>
        <context>AATTCGAAAT[T/G]TTCTATATCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AATCAGGGAAATCTAATATTTCAGAATCTGAAAATCTGAAAATTCGAAAT</left_flank>
        <right_flank>TTCTATATCTCAAAGATCAGAATCTCAGAATTGAAAGACTGAGAATCCTG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATAAAAATTGTCCTTTTTTCTAGATCTTTATAACAAAGCATTTGTTGAAAATGTTGAATTTTCTAGGTTTCAGATAAATTCCATGTTGTTAGATGACGGAAAAAAAATCTGGGACACTGAAAATCTAAAAATTGAAAACTTGAAAATTTCGAATTCCAGAATATATAAATATCATAATCAGAAAATCTGGAAATATGAGACTCTGAGAATCTAAAAATATCAAAATCTGAGGATTTTAGAGTTTTCAGAATCTGAAAATCTGAAAATCTCAGAGTTTGAAAATATCTGAAAATCTTAAAATCGCTGAATTTTAAAATGAAAATCATGAAATCTGGGAATCTGAAAATCACAGAGTCTTAAAAGCTGAAAATCTAAAAATTTGGAAATCTGAAAAACTGAAAATCTCAGAATTTGGAAATATCATAACATCAGCATCTCATAATCTGAAAATCAGGGAAATCTAATATTTCAGAATCTGAAAATCTGAAAATTCGAAATTTTCTATATCTCAAAGATCAGAATCTCAGAATTGAAAGACTGAGAATCCTGAGGGTTCAGAAGTTTCAGAGAAAACCAAGAAATCGTTGAAATCAAAAAATCGAAATAGTCGGAGAAAACAAAAAAAGGGGAAACTTCCGGGAAATAAAATTAAGAAGCTTCTCTGATGAATGAAAATTCTGGAAAACCGGCAAAATCCAAAAAAAAAACTGAAATGTCTAATAAATCATCTTTAGAGGCCTACGAAATATCTGAAACGTTATTGGATAGACCTTGATATTTTCAATCTGATATTTTCAGACAAATAGAGAAATTCTGGATTACTTTTTCAGCACTTCAAAATACCTTCCTCTGAGAAATTCAAAATTTAGAAACCTCATTAATTTTTCAGATTTTCAGTTTTTCAATACTTCAAGTTTCCAACTTTTCCAGTTTTTGGATTTTCTATTTTCAGGCACTGACTTTTAGATTTCCAAGTATTCAAGTTTTTTTTTCAAAATT</canonical>
            <polymorphic>GATAAAAATTGTCCTTTTTTCTAGATCTTTATAACAAAGCATTTGTTGAAAATGTTGAATTTTCTAGGTTTCAGATAAATTCCATGTTGTTAGATGACGGAAAAAAAATCTGGGACACTGAAAATCTAAAAATTGAAAACTTGAAAATTTCGAATTCCAGAATATATAAATATCATAATCAGAAAATCTGGAAATATGAGACTCTGAGAATCTAAAAATATCAAAATCTGAGGATTTTAGAGTTTTCAGAATCTGAAAATCTGAAAATCTCAGAGTTTGAAAATATCTGAAAATCTTAAAATCGCTGAATTTTAAAATGAAAATCATGAAATCTGGGAATCTGAAAATCACAGAGTCTTAAAAGCTGAAAATCTAAAAATTTGGAAATCTGAAAAACTGAAAATCTCAGAATTTGGAAATATCATAACATCAGCATCTCATAATCTGAAAATCAGGGAAATCTAATATTTCAGAATCTGAAAATCTGAAAATTCGAAATKTTCTATATCTCAAAGATCAGAATCTCAGAATTGAAAGACTGAGAATCCTGAGGGTTCAGAAGTTTCAGAGAAAACCAAGAAATCGTTGAAATCAAAAAATCGAAATAGTCGGAGAAAACAAAAAAAGGGGAAACTTCCGGGAAATAAAATTAAGAAGCTTCTCTGATGAATGAAAATTCTGGAAAACCGGCAAAATCCAAAAAAAAAACTGAAATGTCTAATAAATCATCTTTAGAGGCCTACGAAATATCTGAAACGTTATTGGATAGACCTTGATATTTTCAATCTGATATTTTCAGACAAATAGAGAAATTCTGGATTACTTTTTCAGCACTTCAAAATACCTTCCTCTGAGAAATTCAAAATTTAGAAACCTCATTAATTTTTCAGATTTTCAGTTTTTCAATACTTCAAGTTTCCAACTTTTCCAGTTTTTGGATTTTCTATTTTCAGGCACTGACTTTTAGATTTCCAAGTATTCAAGTTTTTTTTTCAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>178 155 137 136 80 70 68 57 46 32 20 7 7 7</canonical_bands>
                <polymorphic_bands>185 155 137 136 80 70 68 57 46 32 20 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>155 136 119 116 80 70 53 51 46 32 32 27 20 17 15 7 7 7 6 4</canonical_bands>
                <polymorphic_bands>155 136 119 116 80 70 53 51 46 39 32 27 20 17 15 7 7 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATCTGAAAATCACAGAGTCTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTCTTGGTTTTCTCTGAAACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAATCTGAAAATCACAGAGTCTTAAAAGCTGAAAATCTAAAAATTTGGAAATCTGAAAAACTGAAAATCTCAGAATTTGGAAATATCATAACATCAGCATCTCATAATCTGAAAATCAGGGAAATCTAATATTTCAGAATCTGAAAATCTGAAAATTCGAAATTTTCTATATCTCAAAGATCAGAATCTCAGAATTGAAAGACTGAGAATCCTGAGGGTTCAGAAGTTTCAGAGAAAACCAAGAAAT</canonical_amplicon>
		<polymorphic_amplicon>GAATCTGAAAATCACAGAGTCTTAAAAGCTGAAAATCTAAAAATTTGGAAATCTGAAAAACTGAAAATCTCAGAATTTGGAAATATCATAACATCAGCATCTCATAATCTGAAAATCAGGGAAATCTAATATTTCAGAATCTGAAAATCTGAAAATTCGAAATKTTCTATATCTCAAAGATCAGAATCTCAGAATTGAAAGACTGAGAATCCTGAGGGTTCAGAAGTTTCAGAGAAAACCAAGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31701</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>381651</contig_pos>
        <strand></strand>
        <context>AAAGACTGAG[A/G]ATCCTGAGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAAATTTTCTATATCTCAAAGATCAGAATCTCAGAATTGAAAGACTGAG</left_flank>
        <right_flank>ATCCTGAGGGTTCAGAAGTTTCAGAGAAAACCAAGAAATCGTTGAAATCA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTGAAAATGTTGAATTTTCTAGGTTTCAGATAAATTCCATGTTGTTAGATGACGGAAAAAAAATCTGGGACACTGAAAATCTAAAAATTGAAAACTTGAAAATTTCGAATTCCAGAATATATAAATATCATAATCAGAAAATCTGGAAATATGAGACTCTGAGAATCTAAAAATATCAAAATCTGAGGATTTTAGAGTTTTCAGAATCTGAAAATCTGAAAATCTCAGAGTTTGAAAATATCTGAAAATCTTAAAATCGCTGAATTTTAAAATGAAAATCATGAAATCTGGGAATCTGAAAATCACAGAGTCTTAAAAGCTGAAAATCTAAAAATTTGGAAATCTGAAAAACTGAAAATCTCAGAATTTGGAAATATCATAACATCAGCATCTCATAATCTGAAAATCAGGGAAATCTAATATTTCAGAATCTGAAAATCTGAAAATTCGAAATTTTCTATATCTCAAAGATCAGAATCTCAGAATTGAAAGACTGAGAATCCTGAGGGTTCAGAAGTTTCAGAGAAAACCAAGAAATCGTTGAAATCAAAAAATCGAAATAGTCGGAGAAAACAAAAAAAGGGGAAACTTCCGGGAAATAAAATTAAGAAGCTTCTCTGATGAATGAAAATTCTGGAAAACCGGCAAAATCCAAAAAAAAAACTGAAATGTCTAATAAATCATCTTTAGAGGCCTACGAAATATCTGAAACGTTATTGGATAGACCTTGATATTTTCAATCTGATATTTTCAGACAAATAGAGAAATTCTGGATTACTTTTTCAGCACTTCAAAATACCTTCCTCTGAGAAATTCAAAATTTAGAAACCTCATTAATTTTTCAGATTTTCAGTTTTTCAATACTTCAAGTTTCCAACTTTTCCAGTTTTTGGATTTTCTATTTTCAGGCACTGACTTTTAGATTTCCAAGTATTCAAGTTTTTTTTTCAAAATTTCAAAATTTCAAATTTCTTTCCAATTTTCATATTTTTGGATTAT</canonical>
            <polymorphic>GTTGAAAATGTTGAATTTTCTAGGTTTCAGATAAATTCCATGTTGTTAGATGACGGAAAAAAAATCTGGGACACTGAAAATCTAAAAATTGAAAACTTGAAAATTTCGAATTCCAGAATATATAAATATCATAATCAGAAAATCTGGAAATATGAGACTCTGAGAATCTAAAAATATCAAAATCTGAGGATTTTAGAGTTTTCAGAATCTGAAAATCTGAAAATCTCAGAGTTTGAAAATATCTGAAAATCTTAAAATCGCTGAATTTTAAAATGAAAATCATGAAATCTGGGAATCTGAAAATCACAGAGTCTTAAAAGCTGAAAATCTAAAAATTTGGAAATCTGAAAAACTGAAAATCTCAGAATTTGGAAATATCATAACATCAGCATCTCATAATCTGAAAATCAGGGAAATCTAATATTTCAGAATCTGAAAATCTGAAAATTCGAAATTTTCTATATCTCAAAGATCAGAATCTCAGAATTGAAAGACTGAGRATCCTGAGGGTTCAGAAGTTTCAGAGAAAACCAAGAAATCGTTGAAATCAAAAAATCGAAATAGTCGGAGAAAACAAAAAAAGGGGAAACTTCCGGGAAATAAAATTAAGAAGCTTCTCTGATGAATGAAAATTCTGGAAAACCGGCAAAATCCAAAAAAAAAACTGAAATGTCTAATAAATCATCTTTAGAGGCCTACGAAATATCTGAAACGTTATTGGATAGACCTTGATATTTTCAATCTGATATTTTCAGACAAATAGAGAAATTCTGGATTACTTTTTCAGCACTTCAAAATACCTTCCTCTGAGAAATTCAAAATTTAGAAACCTCATTAATTTTTCAGATTTTCAGTTTTTCAATACTTCAAGTTTCCAACTTTTCCAGTTTTTGGATTTTCTATTTTCAGGCACTGACTTTTAGATTTCCAAGTATTCAAGTTTTTTTTTCAAAATTTCAAAATTTCAAATTTCTTTCCAATTTTCATATTTTTGGATTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>501 156 120 88 47 41 23 16 8</canonical_bands>
                <polymorphic_bands>524 156 120 88 47 41 16 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 164 136 88 47 41 23</canonical_bands>
                <polymorphic_bands>524 164 136 88 47 41</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCACAGAGTCTTAAAAGCTGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGATTTCAACGATTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATCACAGAGTCTTAAAAGCTGAAAATCTAAAAATTTGGAAATCTGAAAAACTGAAAATCTCAGAATTTGGAAATATCATAACATCAGCATCTCATAATCTGAAAATCAGGGAAATCTAATATTTCAGAATCTGAAAATCTGAAAATTCGAAATTTTCTATATCTCAAAGATCAGAATCTCAGAATTGAAAGACTGAGAATCCTGAGGGTTCAGAAGTTTCAGAGAAAACCAAGAAATCGTTGAAATCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATCACAGAGTCTTAAAAGCTGAAAATCTAAAAATTTGGAAATCTGAAAAACTGAAAATCTCAGAATTTGGAAATATCATAACATCAGCATCTCATAATCTGAAAATCAGGGAAATCTAATATTTCAGAATCTGAAAATCTGAAAATTCGAAATTTTCTATATCTCAAAGATCAGAATCTCAGAATTGAAAGACTGAGRATCCTGAGGGTTCAGAAGTTTCAGAGAAAACCAAGAAATCGTTGAAATCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31702</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>381738</contig_pos>
        <strand></strand>
        <context>AAAAAAGGGG[A/G]AACTTCCGGR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCGTTGAAATCAAAAAATCGAAATAGTCGGAGAAAACAAAAAAAGGGG</left_flank>
        <right_flank>AACTTCCGGGAAATAAAATTAAGAAGCTTCTCTGATGAATGAAAATTCTG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGAAAACTTGAAAATTTCGAATTCCAGAATATATAAATATCATAATCAGAAAATCTGGAAATATGAGACTCTGAGAATCTAAAAATATCAAAATCTGAGGATTTTAGAGTTTTCAGAATCTGAAAATCTGAAAATCTCAGAGTTTGAAAATATCTGAAAATCTTAAAATCGCTGAATTTTAAAATGAAAATCATGAAATCTGGGAATCTGAAAATCACAGAGTCTTAAAAGCTGAAAATCTAAAAATTTGGAAATCTGAAAAACTGAAAATCTCAGAATTTGGAAATATCATAACATCAGCATCTCATAATCTGAAAATCAGGGAAATCTAATATTTCAGAATCTGAAAATCTGAAAATTCGAAATTTTCTATATCTCAAAGATCAGAATCTCAGAATTGAAAGACTGAGAATCCTGAGGGTTCAGAAGTTTCAGAGAAAACCAAGAAATCGTTGAAATCAAAAAATCGAAATAGTCGGAGAAAACAAAAAAAGGGGAAACTTCCGGGAAATAAAATTAAGAAGCTTCTCTGATGAATGAAAATTCTGGAAAACCGGCAAAATCCAAAAAAAAAACTGAAATGTCTAATAAATCATCTTTAGAGGCCTACGAAATATCTGAAACGTTATTGGATAGACCTTGATATTTTCAATCTGATATTTTCAGACAAATAGAGAAATTCTGGATTACTTTTTCAGCACTTCAAAATACCTTCCTCTGAGAAATTCAAAATTTAGAAACCTCATTAATTTTTCAGATTTTCAGTTTTTCAATACTTCAAGTTTCCAACTTTTCCAGTTTTTGGATTTTCTATTTTCAGGCACTGACTTTTAGATTTCCAAGTATTCAAGTTTTTTTTTCAAAATTTCAAAATTTCAAATTTCTTTCCAATTTTCATATTTTTGGATTATCAAGTTCTCAGAGTCTCAAATTTTCAGATTTTTAGGCTTAAATTTTGTTGACTTGACTATGAAATTTTCAGACTGTACTAAACAAAA</canonical>
            <polymorphic>ATTGAAAACTTGAAAATTTCGAATTCCAGAATATATAAATATCATAATCAGAAAATCTGGAAATATGAGACTCTGAGAATCTAAAAATATCAAAATCTGAGGATTTTAGAGTTTTCAGAATCTGAAAATCTGAAAATCTCAGAGTTTGAAAATATCTGAAAATCTTAAAATCGCTGAATTTTAAAATGAAAATCATGAAATCTGGGAATCTGAAAATCACAGAGTCTTAAAAGCTGAAAATCTAAAAATTTGGAAATCTGAAAAACTGAAAATCTCAGAATTTGGAAATATCATAACATCAGCATCTCATAATCTGAAAATCAGGGAAATCTAATATTTCAGAATCTGAAAATCTGAAAATTCGAAATTTTCTATATCTCAAAGATCAGAATCTCAGAATTGAAAGACTGAGAATCCTGAGGGTTCAGAAGTTTCAGAGAAAACCAAGAAATCGTTGAAATCAAAAAATCGAAATAGTCGGAGAAAACAAAAAAAGGGGRAACTTCCGGGAAATAAAATTAAGAAGCTTCTCTGATGAATGAAAATTCTGGAAAACCGGCAAAATCCAAAAAAAAAACTGAAATGTCTAATAAATCATCTTTAGAGGCCTACGAAATATCTGAAACGTTATTGGATAGACCTTGATATTTTCAATCTGATATTTTCAGACAAATAGAGAAATTCTGGATTACTTTTTCAGCACTTCAAAATACCTTCCTCTGAGAAATTCAAAATTTAGAAACCTCATTAATTTTTCAGATTTTCAGTTTTTCAATACTTCAAGTTTCCAACTTTTCCAGTTTTTGGATTTTCTATTTTCAGGCACTGACTTTTAGATTTCCAAGTATTCAAGTTTTTTTTTCAAAATTTCAAAATTTCAAATTTCTTTCCAATTTTCATATTTTTGGATTATCAAGTTCTCAGAGTCTCAAATTTTCAGATTTTTAGGCTTAAATTTTGTTGACTTGACTATGAAATTTTCAGACTGTACTAAACAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATCAGAATCTCAGAATTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TAACGTTTCAGATATTTCGTAGG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGATCAGAATCTCAGAATTGAAAGACTGAGAATCCTGAGGGTTCAGAAGTTTCAGAGAAAACCAAGAAATCGTTGAAATCAAAAAATCGAAATAGTCGGAGAAAACAAAAAAAGGGGAAACTTCCGGGAAATAAAATTAAGAAGCTTCTCTGATGAATGAAAATTCTGGAAAACCGGCAAAATCCAAAAAAAAAACTGAAATGTCTAATAAATCATCTTTAGAGGCCTACGAAATATCTGAAACGTTA</canonical_amplicon>
		<polymorphic_amplicon>AGATCAGAATCTCAGAATTGAAAGACTGAGAATCCTGAGGGTTCAGAAGTTTCAGAGAAAACCAAGAAATCGTTGAAATCAAAAAATCGAAATAGTCGGAGAAAACAAAAAAAGGGGRAACTTCCGGGAAATAAAATTAAGAAGCTTCTCTGATGAATGAAAATTCTGGAAAACCGGCAAAATCCAAAAAAAAAACTGAAATGTCTAATAAATCATCTTTAGAGGCCTACGAAATATCTGAAACGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31703</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>381748</contig_pos>
        <strand></strand>
        <context>RAACTTCCGG[G/A]AAATAAAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATCAAAAAATCGAAATAGTCGGAGAAAACAAAAAAAGGGGAAACTTCCGG</left_flank>
        <right_flank>AAATAAAATTAAGAAGCTTCTCTGATGAATGAAAATTCTGGAAAACCGGC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAAATTTCGAATTCCAGAATATATAAATATCATAATCAGAAAATCTGGAAATATGAGACTCTGAGAATCTAAAAATATCAAAATCTGAGGATTTTAGAGTTTTCAGAATCTGAAAATCTGAAAATCTCAGAGTTTGAAAATATCTGAAAATCTTAAAATCGCTGAATTTTAAAATGAAAATCATGAAATCTGGGAATCTGAAAATCACAGAGTCTTAAAAGCTGAAAATCTAAAAATTTGGAAATCTGAAAAACTGAAAATCTCAGAATTTGGAAATATCATAACATCAGCATCTCATAATCTGAAAATCAGGGAAATCTAATATTTCAGAATCTGAAAATCTGAAAATTCGAAATTTTCTATATCTCAAAGATCAGAATCTCAGAATTGAAAGACTGAGAATCCTGAGGGTTCAGAAGTTTCAGAGAAAACCAAGAAATCGTTGAAATCAAAAAATCGAAATAGTCGGAGAAAACAAAAAAAGGGGAAACTTCCGGGAAATAAAATTAAGAAGCTTCTCTGATGAATGAAAATTCTGGAAAACCGGCAAAATCCAAAAAAAAAACTGAAATGTCTAATAAATCATCTTTAGAGGCCTACGAAATATCTGAAACGTTATTGGATAGACCTTGATATTTTCAATCTGATATTTTCAGACAAATAGAGAAATTCTGGATTACTTTTTCAGCACTTCAAAATACCTTCCTCTGAGAAATTCAAAATTTAGAAACCTCATTAATTTTTCAGATTTTCAGTTTTTCAATACTTCAAGTTTCCAACTTTTCCAGTTTTTGGATTTTCTATTTTCAGGCACTGACTTTTAGATTTCCAAGTATTCAAGTTTTTTTTTCAAAATTTCAAAATTTCAAATTTCTTTCCAATTTTCATATTTTTGGATTATCAAGTTCTCAGAGTCTCAAATTTTCAGATTTTTAGGCTTAAATTTTGTTGACTTGACTATGAAATTTTCAGACTGTACTAAACAAAAATAGAGCTTT</canonical>
            <polymorphic>TGAAAATTTCGAATTCCAGAATATATAAATATCATAATCAGAAAATCTGGAAATATGAGACTCTGAGAATCTAAAAATATCAAAATCTGAGGATTTTAGAGTTTTCAGAATCTGAAAATCTGAAAATCTCAGAGTTTGAAAATATCTGAAAATCTTAAAATCGCTGAATTTTAAAATGAAAATCATGAAATCTGGGAATCTGAAAATCACAGAGTCTTAAAAGCTGAAAATCTAAAAATTTGGAAATCTGAAAAACTGAAAATCTCAGAATTTGGAAATATCATAACATCAGCATCTCATAATCTGAAAATCAGGGAAATCTAATATTTCAGAATCTGAAAATCTGAAAATTCGAAATTTTCTATATCTCAAAGATCAGAATCTCAGAATTGAAAGACTGAGAATCCTGAGGGTTCAGAAGTTTCAGAGAAAACCAAGAAATCGTTGAAATCAAAAAATCGAAATAGTCGGAGAAAACAAAAAAAGGGGAAACTTCCGGRAAATAAAATTAAGAAGCTTCTCTGATGAATGAAAATTCTGGAAAACCGGCAAAATCCAAAAAAAAAACTGAAATGTCTAATAAATCATCTTTAGAGGCCTACGAAATATCTGAAACGTTATTGGATAGACCTTGATATTTTCAATCTGATATTTTCAGACAAATAGAGAAATTCTGGATTACTTTTTCAGCACTTCAAAATACCTTCCTCTGAGAAATTCAAAATTTAGAAACCTCATTAATTTTTCAGATTTTCAGTTTTTCAATACTTCAAGTTTCCAACTTTTCCAGTTTTTGGATTTTCTATTTTCAGGCACTGACTTTTAGATTTCCAAGTATTCAAGTTTTTTTTTCAAAATTTCAAAATTTCAAATTTCTTTCCAATTTTCATATTTTTGGATTATCAAGTTCTCAGAGTCTCAAATTTTCAGATTTTTAGGCTTAAATTTTGTTGACTTGACTATGAAATTTTCAGACTGTACTAAACAAAAATAGAGCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATCAGAATCTCAGAATTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TAACGTTTCAGATATTTCGTAGG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGATCAGAATCTCAGAATTGAAAGACTGAGAATCCTGAGGGTTCAGAAGTTTCAGAGAAAACCAAGAAATCGTTGAAATCAAAAAATCGAAATAGTCGGAGAAAACAAAAAAAGGGGAAACTTCCGGGAAATAAAATTAAGAAGCTTCTCTGATGAATGAAAATTCTGGAAAACCGGCAAAATCCAAAAAAAAAACTGAAATGTCTAATAAATCATCTTTAGAGGCCTACGAAATATCTGAAACGTTA</canonical_amplicon>
		<polymorphic_amplicon>AGATCAGAATCTCAGAATTGAAAGACTGAGAATCCTGAGGGTTCAGAAGTTTCAGAGAAAACCAAGAAATCGTTGAAATCAAAAAATCGAAATAGTCGGAGAAAACAAAAAAAGGGGAAACTTCCGGRAAATAAAATTAAGAAGCTTCTCTGATGAATGAAAATTCTGGAAAACCGGCAAAATCCAAAAAAAAAACTGAAATGTCTAATAAATCATCTTTAGAGGCCTACGAAATATCTGAAACGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31704</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>401332</contig_pos>
        <strand></strand>
        <context>ctttgacctg[A/G]tttatctcgg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAACAGAATGCCGACGTCACTACCTCCACCAAACCGTCAACTTTGACCTG</left_flank>
        <right_flank>TTTATCTCGGTTTTTGTAAAAGATATCAAAAAATGGTCAACTAATAAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAATATATATCAAAGTGCCAAAAAAAGTGTGGGTAGTGAAAAAGAACGGGAGAAAAAAGCAACATTGCGAAATATCTGTCGTCACAATCAAATTTTTTTCCTGTGTCATTGCCTTCCCCCGTGTGAGGCTATGTATGTGTTTGAACAGCTATGTTTAGAGGAAATATCCTTTTTTGACAAGTTTTTGGGCATCAGCTGGTTGAAAAATAGGAAGAGCTGGGGTGCCTGGAATTGTGCACTTAGATACAGTACCCTCCAAAAATTTATTATCCTAAATTGGACAAATTGGGAATCGAAAGTCCGGATGTTTAAAAAATAAACTAGATTTTGATAGATTCAGCTGAAAATTTCAGAGTATACTAAATAGAAACACAGCTTTAATTTTGTAGTTGACAATTTTGTTGTACAAATTCATCCAGAGGAGATATACCGCTCGAAATCGCGCTATAACAGAATGCCGACGTCACTACCTCCACCAAACCGTCAACTTTGACCTGATTTATCTCGGTTTTTGTAAAAGATATCAAAAAATGGTCAACTAATAAAATATTTTTGATAATTTGATAAACATTTTACCAGCTAATTATTTTTGGATATCTTATTCAGGAACCGAGATATATGGGCTTAACGTTAGAAGTGTGTCCAACGCTGTCGACAGTGTACTGGCGTGCCGTCAACGTTGAGCTTATATATTTTAGTTACTGTGAAAGATATCAAAAAGTTATCAACTAATAAAATATTTGTAATATTATGATAAATATTTTATTAGTTGGCTATTTTTTGATACCATTTACAGGAACCGAGATAAATTGGCTCAAAGTTGATTGCGCTAGAAATTGGTTTCTAGATGCTTTGGCACTTGGCTTGTTTTGAGCGGTTTATCTTATCAAGATGAATTTTTAGCAAAAAATTGTTAATTACAAAATTGAAGCTCTATTTTTGTTTAGTATACTCTAAAATTTTCAGACAAATCAAACAATTTTGGACCACTTTTTAAT</canonical>
            <polymorphic>TCCAATATATATCAAAGTGCCAAAAAAAGTGTGGGTAGTGAAAAAGAACGGGAGAAAAAAGCAACATTGCGAAATATCTGTCGTCACAATCAAATTTTTTTCCTGTGTCATTGCCTTCCCCCGTGTGAGGCTATGTATGTGTTTGAACAGCTATGTTTAGAGGAAATATCCTTTTTTGACAAGTTTTTGGGCATCAGCTGGTTGAAAAATAGGAAGAGCTGGGGTGCCTGGAATTGTGCACTTAGATACAGTACCCTCCAAAAATTTATTATCCTAAATTGGACAAATTGGGAATCGAAAGTCCGGATGTTTAAAAAATAAACTAGATTTTGATAGATTCAGCTGAAAATTTCAGAGTATACTAAATAGAAACACAGCTTTAATTTTGTAGTTGACAATTTTGTTGTACAAATTCATCCAGAGGAGATATACCGCTCGAAATCGCGCTATAACAGAATGCCGACGTCACTACCTCCACCAAACCGTCAACTTTGACCTGRTTTATCTCGGTTTTTGTAAAAGATATCAAAAAATGGTCAACTAATAAAATATTTTTGATAATTTGATAAACATTTTACCAGCTAATTATTTTTGGATATCTTATTCAGGAACCGAGATATATGGGCTTAACGTTAGAAGTGTGTCCAACGCTGTCGACAGTGTACTGGCGTGCCGTCAACGTTGAGCTTATATATTTTAGTTACTGTGAAAGATATCAAAAAGTTATCAACTAATAAAATATTTGTAATATTATGATAAATATTTTATTAGTTGGCTATTTTTTGATACCATTTACAGGAACCGAGATAAATTGGCTCAAAGTTGATTGCGCTAGAAATTGGTTTCTAGATGCTTTGGCACTTGGCTTGTTTTGAGCGGTTTATCTTATCAAGATGAATTTTTAGCAAAAAATTGTTAATTACAAAATTGAAGCTCTATTTTTGTTTAGTATACTCTAAAATTTTCAGACAAATCAAACAATTTTGGACCACTTTTTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCGCGCTATAACAGAATG</pcr_primer_p1>
		<pcr_primer_p2>CAAAGCATCTAGAAACCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>418</pcr_amplicon_size>
		<canonical_amplicon>AATCGCGCTATAACAGAATGCCGACGTCACTACCTCCACCAAACCGTCAACTTTGACCTGATTTATCTCGGTTTTTGTAAAAGATATCAAAAAATGGTCAACTAATAAAATATTTTTGATAATTTGATAAACATTTTACCAGCTAATTATTTTTGGATATCTTATTCAGGAACCGAGATATATGGGCTTAACGTTAGAAGTGTGTCCAACGCTGTCGACAGTGTACTGGCGTGCCGTCAACGTTGAGCTTATATATTTTAGTTACTGTGAAAGATATCAAAAAGTTATCAACTAATAAAATATTTGTAATATTATGATAAATATTTTATTAGTTGGCTATTTTTTGATACCATTTACAGGAACCGAGATAAATTGGCTCAAAGTTGATTGCGCTAGAAATTGGTTTCTAGATGCTTTG</canonical_amplicon>
		<polymorphic_amplicon>AATCGCGCTATAACAGAATGCCGACGTCACTACCTCCACCAAACCGTCAACTTTGACCTGRTTTATCTCGGTTTTTGTAAAAGATATCAAAAAATGGTCAACTAATAAAATATTTTTGATAATTTGATAAACATTTTACCAGCTAATTATTTTTGGATATCTTATTCAGGAACCGAGATATATGGGCTTAACGTTAGAAGTGTGTCCAACGCTGTCGACAGTGTACTGGCGTGCCGTCAACGTTGAGCTTATATATTTTAGTTACTGTGAAAGATATCAAAAAGTTATCAACTAATAAAATATTTGTAATATTATGATAAATATTTTATTAGTTGGCTATTTTTTGATACCATTTACAGGAACCGAGATAAATTGGCTCAAAGTTGATTGCGCTAGAAATTGGTTTCTAGATGCTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31705</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>401531</contig_pos>
        <strand></strand>
        <context>tatatatttt[A/G]gttactgtga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCTGTCGACAGTGTACTGGCGTGCCGTCAACGTTGAGCTTATATATTTT</left_flank>
        <right_flank>GTTACTGTGAAAGATATCAAAAAGTTATCAACTAATAAAATATTTGTAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTGAAAAATAGGAAGAGCTGGGGTGCCTGGAATTGTGCACTTAGATACAGTACCCTCCAAAAATTTATTATCCTAAATTGGACAAATTGGGAATCGAAAGTCCGGATGTTTAAAAAATAAACTAGATTTTGATAGATTCAGCTGAAAATTTCAGAGTATACTAAATAGAAACACAGCTTTAATTTTGTAGTTGACAATTTTGTTGTACAAATTCATCCAGAGGAGATATACCGCTCGAAATCGCGCTATAACAGAATGCCGACGTCACTACCTCCACCAAACCGTCAACTTTGACCTGATTTATCTCGGTTTTTGTAAAAGATATCAAAAAATGGTCAACTAATAAAATATTTTTGATAATTTGATAAACATTTTACCAGCTAATTATTTTTGGATATCTTATTCAGGAACCGAGATATATGGGCTTAACGTTAGAAGTGTGTCCAACGCTGTCGACAGTGTACTGGCGTGCCGTCAACGTTGAGCTTATATATTTTAGTTACTGTGAAAGATATCAAAAAGTTATCAACTAATAAAATATTTGTAATATTATGATAAATATTTTATTAGTTGGCTATTTTTTGATACCATTTACAGGAACCGAGATAAATTGGCTCAAAGTTGATTGCGCTAGAAATTGGTTTCTAGATGCTTTGGCACTTGGCTTGTTTTGAGCGGTTTATCTTATCAAGATGAATTTTTAGCAAAAAATTGTTAATTACAAAATTGAAGCTCTATTTTTGTTTAGTATACTCTAAAATTTTCAGACAAATCAAACAATTTTGGACCACTTTTTAATGGTTTTACAGGGCTTTGTTGGCGATTTTCAACTAAAAATTTCAGGTGCTGTAGTTCAAATTTCAGAGAATTTCAACAAGTTTTAGCAAATTTAAAATAGACCCTACCTGCTCAAAGAACTCCTCCATATACTGTGCATTTCCGGTCTCCATGTGCATATCATCATCTTGCTCGTCTTCCGACTGCGCCGCTTTTAGAGC</canonical>
            <polymorphic>GGTTGAAAAATAGGAAGAGCTGGGGTGCCTGGAATTGTGCACTTAGATACAGTACCCTCCAAAAATTTATTATCCTAAATTGGACAAATTGGGAATCGAAAGTCCGGATGTTTAAAAAATAAACTAGATTTTGATAGATTCAGCTGAAAATTTCAGAGTATACTAAATAGAAACACAGCTTTAATTTTGTAGTTGACAATTTTGTTGTACAAATTCATCCAGAGGAGATATACCGCTCGAAATCGCGCTATAACAGAATGCCGACGTCACTACCTCCACCAAACCGTCAACTTTGACCTGATTTATCTCGGTTTTTGTAAAAGATATCAAAAAATGGTCAACTAATAAAATATTTTTGATAATTTGATAAACATTTTACCAGCTAATTATTTTTGGATATCTTATTCAGGAACCGAGATATATGGGCTTAACGTTAGAAGTGTGTCCAACGCTGTCGACAGTGTACTGGCGTGCCGTCAACGTTGAGCTTATATATTTTRGTTACTGTGAAAGATATCAAAAAGTTATCAACTAATAAAATATTTGTAATATTATGATAAATATTTTATTAGTTGGCTATTTTTTGATACCATTTACAGGAACCGAGATAAATTGGCTCAAAGTTGATTGCGCTAGAAATTGGTTTCTAGATGCTTTGGCACTTGGCTTGTTTTGAGCGGTTTATCTTATCAAGATGAATTTTTAGCAAAAAATTGTTAATTACAAAATTGAAGCTCTATTTTTGTTTAGTATACTCTAAAATTTTCAGACAAATCAAACAATTTTGGACCACTTTTTAATGGTTTTACAGGGCTTTGTTGGCGATTTTCAACTAAAAATTTCAGGTGCTGTAGTTCAAATTTCAGAGAATTTCAACAAGTTTTAGCAAATTTAAAATAGACCCTACCTGCTCAAAGAACTCCTCCATATACTGTGCATTTCCGGTCTCCATGTGCATATCATCATCTTGCTCGTCTTCCGACTGCGCCGCTTTTAGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCGCGCTATAACAGAATG</pcr_primer_p1>
		<pcr_primer_p2>CAAAGCATCTAGAAACCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>418</pcr_amplicon_size>
		<canonical_amplicon>AATCGCGCTATAACAGAATGCCGACGTCACTACCTCCACCAAACCGTCAACTTTGACCTGATTTATCTCGGTTTTTGTAAAAGATATCAAAAAATGGTCAACTAATAAAATATTTTTGATAATTTGATAAACATTTTACCAGCTAATTATTTTTGGATATCTTATTCAGGAACCGAGATATATGGGCTTAACGTTAGAAGTGTGTCCAACGCTGTCGACAGTGTACTGGCGTGCCGTCAACGTTGAGCTTATATATTTTAGTTACTGTGAAAGATATCAAAAAGTTATCAACTAATAAAATATTTGTAATATTATGATAAATATTTTATTAGTTGGCTATTTTTTGATACCATTTACAGGAACCGAGATAAATTGGCTCAAAGTTGATTGCGCTAGAAATTGGTTTCTAGATGCTTTG</canonical_amplicon>
		<polymorphic_amplicon>AATCGCGCTATAACAGAATGCCGACGTCACTACCTCCACCAAACCGTCAACTTTGACCTGATTTATCTCGGTTTTTGTAAAAGATATCAAAAAATGGTCAACTAATAAAATATTTTTGATAATTTGATAAACATTTTACCAGCTAATTATTTTTGGATATCTTATTCAGGAACCGAGATATATGGGCTTAACGTTAGAAGTGTGTCCAACGCTGTCGACAGTGTACTGGCGTGCCGTCAACGTTGAGCTTATATATTTTRGTTACTGTGAAAGATATCAAAAAGTTATCAACTAATAAAATATTTGTAATATTATGATAAATATTTTATTAGTTGGCTATTTTTTGATACCATTTACAGGAACCGAGATAAATTGGCTCAAAGTTGATTGCGCTAGAAATTGGTTTCTAGATGCTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31706</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>407931</contig_pos>
        <strand>+</strand>
        <context>ATTTATTGAT[A/T]AAAAAAAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGCCAAGCCGTTAAATATCGGCATGCGCCTTTAAACGAAATTTATTGAT</left_flank>
        <right_flank>AAAAAAAATAATTCCAAAAAATCGTTTATAGGCGCATATCGCTGTTTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAGTGCAAGTACAGAAATATTCTATTGGAGGAACTATATCAGGGTTACCGTAGTTCAGAAAGTCTCCATAAAATGAAGCCACGAAACCCTTCCTAGAGAACATGGGAGCAAAAAAAGAAGCACGGAAAAACAACGAGACCTAATAAGCCGTAAAAACGACATGTCTCTTTTTTTGCTCTGTGCTGCTGCCGAGAGTTGTGTGTTTATGTATTCATAAATATATCCATGTCTTCGAACGAAAAAAAAATAGCTAGCTAGGATGAAGAGTACCACAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGCAAAAGGGGTCGAGGAGTAGGGGTCTTAAATGAGGTATATTTTGTTGTTTGTTATCCGGGACGGGGCGCGGATGAAATGTGATTTACGAGGAAGCAAGAGAAAATAATATAGGTATAAGGATATTTACAGCCAAGCCGTTAAATATCGGCATGCGCCTTTAAACGAAATTTATTGATTAAAAAAAATAATTCCAAAAAATCGTTTATAGGCGCATATCGCTGTTTTCATATACTGCGCCTTTAAATGCATTTTCGAACAAATACCGTGGAACCTGTAATAGAAGGGCCCTCTAACTTTTAACTTTGACCCAATTTATCTCGGTTCCTGTAAGAGATATCAAAAAGTGGTCAACTGATAGAAGGTTTTCGATAATATGATAAACATTTTATTAGTTGATCACTTTTTGATATCTCTTACAGTAACCGAGATAAATTGGCTCAAAGCTCAAAGTTAGAGGGCCTTTCTATTACAGGTTTTATGGTAATATGCAGTTAAAGGCGCATCTTAAAAACAGCATGCGCCTTTAAACAGTTTTTGAACGTAATGAAGTGGATTTTGCCATTTCCAGAACCTTTTTTATAGTGAGTTACAGTATGACCTAGATTACGATCTTTACTGAAACCGAAATTTCGAATTTTTTCTTGACAATTTCACCTTTAGCCTTGTGATGAAAATCT</canonical>
            <polymorphic>TGAAGTGCAAGTACAGAAATATTCTATTGGAGGAACTATATCAGGGTTACCGTAGTTCAGAAAGTCTCCATAAAATGAAGCCACGAAACCCTTCCTAGAGAACATGGGAGCAAAAAAAGAAGCACGGAAAAACAACGAGACCTAATAAGCCGTAAAAACGACATGTCTCTTTTTTTGCTCTGTGCTGCTGCCGAGAGTTGTGTGTTTATGTATTCATAAATATATCCATGTCTTCGAACGAAAAAAAAATAGCTAGCTAGGATGAAGAGTACCACAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGCAAAAGGGGTCGAGGAGTAGGGGTCTTAAATGAGGTATATTTTGTTGTTTGTTATCCGGGACGGGGCGCGGATGAAATGTGATTTACGAGGAAGCAAGAGAAAATAATATAGGTATAAGGATATTTACAGCCAAGCCGTTAAATATCGGCATGCGCCTTTAAACGAAATTTATTGATWAAAAAAAATAATTCCAAAAAATCGTTTATAGGCGCATATCGCTGTTTTCATATACTGCGCCTTTAAATGCATTTTCGAACAAATACCGTGGAACCTGTAATAGAAGGGCCCTCTAACTTTTAACTTTGACCCAATTTATCTCGGTTCCTGTAAGAGATATCAAAAAGTGGTCAACTGATAGAAGGTTTTCGATAATATGATAAACATTTTATTAGTTGATCACTTTTTGATATCTCTTACAGTAACCGAGATAAATTGGCTCAAAGCTCAAAGTTAGAGGGCCTTTCTATTACAGGTTTTATGGTAATATGCAGTTAAAGGCGCATCTTAAAAACAGCATGCGCCTTTAAACAGTTTTTGAACGTAATGAAGTGGATTTTGCCATTTCCAGAACCTTTTTTATAGTGAGTTACAGTATGACCTAGATTACGATCTTTACTGAAACCGAAATTTCGAATTTTTTCTTGACAATTTCACCTTTAGCCTTGTGATGAAAATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>348 195 153 113 64 57 20 19 18 13</canonical_bands>
                <polymorphic_bands>348 195 153 113 82 57 20 19 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTAGGGGTCTTAAATGAGGTA</pcr_primer_p1>
		<pcr_primer_p2>ATTTAAAGGCGCAGTATATGAA</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>GAGTAGGGGTCTTAAATGAGGTATATTTTGTTGTTTGTTATCCGGGACGGGGCGCGGATGAAATGTGATTTACGAGGAAGCAAGAGAAAATAATATAGGTATAAGGATATTTACAGCCAAGCCGTTAAATATCGGCATGCGCCTTTAAACGAAATTTATTGATTAAAAAAAATAATTCCAAAAAATCGTTTATAGGCGCATATCGCTGTTTTCATATACTGCGCCTTTAAAT</canonical_amplicon>
		<polymorphic_amplicon>GAGTAGGGGTCTTAAATGAGGTATATTTTGTTGTTTGTTATCCGGGACGGGGCGCGGATGAAATGTGATTTACGAGGAAGCAAGAGAAAATAATATAGGTATAAGGATATTTACAGCCAAGCCGTTAAATATCGGCATGCGCCTTTAAACGAAATTTATTGATWAAAAAAAATAATTCCAAAAAATCGTTTATAGGCGCATATCGCTGTTTTCATATACTGCGCCTTTAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31707</snp_id>
        <super_contig>c006601013.Contig3</super_contig>
        <contig_pos>432422</contig_pos>
        <strand>+</strand>
        <context>GCAATTTTTA[A/G]TCCGTTTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATTTTTCAGCTATTTTTAGCATATTTTTGACAGTTTCGGCAATTTTTA</left_flank>
        <right_flank>TCCGTTTTTCTTGATTTTCAGTGTTTTTTATTTTTTGAAAAATTTGGGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTTTTTCTGGAAATTTTTTTTTCAAATTTCAAATTTTAAAGATACTTTGTTTTGTGCAGAAAATCATGTTGATTCAGTTAAAACTTATAAAAAAGTGGCTGGCGGCCGAGTGTGAGTTTTCTAGTCCCGGCCAGCGCGCGAATTCAAATTTTTCAAAGCTTTTTTAAATATTTTTAACCGTTTTTCTCAAAAATTTCAGTTTTTTTTTGACATTTTTGCAAATACTGGTTTGATAAGTTTAAAAAATTGACCAATTCCGTAGGAACGCGGTTGGAAATCGAACGTTTTCACTTGTCAAATATAGTTTTTGCAGAAATTTTAAGAAAAAATCGGAAATTTCCAAGGAAAACCGGTTGGAAATCGAAAAAAAATTCAAAAAATCTGAAAATCAATTTTTTTTTTTGCAATTTTACTCCATTTTCAGTAGTTTTTAGACAATTTTTACAGTGATTTTTCAGCTATTTTTAGCATATTTTTGACAGTTTCGGCAATTTTTAGTCCGTTTTTCTTGATTTTCAGTGTTTTTTATTTTTTGAAAAATTTGGGATTTTTGAAGAATTTTGAGCCGAAATTAGACATTTTTAGCTTATGTGAATTTACATGATTTTCTGCACAAATAAACGAAACTCACATAGAAACCAAGTACTTAACATCATCCCACCAACTAGCGTTATCTCCGGTTTGTCTCGCCCCATCACACGATCCTCTCACAGGCTCCTCGAGCAGAAATATCATTAAACCCATGCAAATCAGTCCTACAATCGGCGAAAATCGAACTCCCCATTGCCAGGAGCCAGTGAGTGTAGCCATTCCTGAACCGGCAATGAATCCAAGACCACTGCCAACTGGAATTGCAAAATAGAAAACCATCAGCACCCGACTTCGCTGGGCTCCGGAGAATAAATCGGATAGCACAGTGGGGGCGATGGTGGAGTAAGAGGCTTCTCCGATGCCAACGACTCCGCGGAGAATTAGGAACAGTGTGTAGTGCTGAAAAA</canonical>
            <polymorphic>AGGTTTTTCTGGAAATTTTTTTTTCAAATTTCAAATTTTAAAGATACTTTGTTTTGTGCAGAAAATCATGTTGATTCAGTTAAAACTTATAAAAAAGTGGCTGGCGGCCGAGTGTGAGTTTTCTAGTCCCGGCCAGCGCGCGAATTCAAATTTTTCAAAGCTTTTTTAAATATTTTTAACCGTTTTTCTCAAAAATTTCAGTTTTTTTTTGACATTTTTGCAAATACTGGTTTGATAAGTTTAAAAAATTGACCAATTCCGTAGGAACGCGGTTGGAAATCGAACGTTTTCACTTGTCAAATATAGTTTTTGCAGAAATTTTAAGAAAAAATCGGAAATTTCCAAGGAAAACCGGTTGGAAATCGAAAAAAAATTCAAAAAATCTGAAAATCAATTTTTTTTTTTGCAATTTTACTCCATTTTCAGTAGTTTTTAGACAATTTTTACAGTGATTTTTCAGCTATTTTTAGCATATTTTTGACAGTTTCGGCAATTTTTARTCCGTTTTTCTTGATTTTCAGTGTTTTTTATTTTTTGAAAAATTTGGGATTTTTGAAGAATTTTGAGCCGAAATTAGACATTTTTAGCTTATGTGAATTTACATGATTTTCTGCACAAATAAACGAAACTCACATAGAAACCAAGTACTTAACATCATCCCACCAACTAGCGTTATCTCCGGTTTGTCTCGCCCCATCACACGATCCTCTCACAGGCTCCTCGAGCAGAAATATCATTAAACCCATGCAAATCAGTCCTACAATCGGCGAAAATCGAACTCCCCATTGCCAGGAGCCAGTGAGTGTAGCCATTCCTGAACCGGCAATGAATCCAAGACCACTGCCAACTGGAATTGCAAAATAGAAAACCATCAGCACCCGACTTCGCTGGGCTCCGGAGAATAAATCGGATAGCACAGTGGGGGCGATGGTGGAGTAAGAGGCTTCTCCGATGCCAACGACTCCGCGGAGAATTAGGAACAGTGTGTAGTGCTGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGCAATTTTACTCCATTT</pcr_primer_p1>
		<pcr_primer_p2>GGTTTCTATGTGAGTTTCGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGCAATTTTACTCCATTTTCAGTAGTTTTTAGACAATTTTTACAGTGATTTTTCAGCTATTTTTAGCATATTTTTGACAGTTTCGGCAATTTTTAGTCCGTTTTTCTTGATTTTCAGTGTTTTTTATTTTTTGAAAAATTTGGGATTTTTGAAGAATTTTGAGCCGAAATTAGACATTTTTAGCTTATGTGAATTTACATGATTTTCTGCACAAATAAACGAAACTCACATAGAAACC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGCAATTTTACTCCATTTTCAGTAGTTTTTAGACAATTTTTACAGTGATTTTTCAGCTATTTTTAGCATATTTTTGACAGTTTCGGCAATTTTTARTCCGTTTTTCTTGATTTTCAGTGTTTTTTATTTTTTGAAAAATTTGGGATTTTTGAAGAATTTTGAGCCGAAATTAGACATTTTTAGCTTATGTGAATTTACATGATTTTCTGCACAAATAAACGAAACTCACATAGAAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31708</snp_id>
        <super_contig>c006601016.Contig2</super_contig>
        <contig_pos>9980</contig_pos>
        <strand></strand>
        <context>ctaatcctag[A/T]tatgattggg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCCAGTTCAGTTAGACGCGTCGCGGTCGCGTTGCGTTTATCTAATCCTAG</left_flank>
        <right_flank>TATGATTGGGGCTTATTTTGAAGCTCTGAACCCGTTTTTCAACAATTTGC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAACCTTTTTTTTTCCAATTACAATCGATATTTTGACCTACTTCGGCAGAATCTGTGTATGAATCCATCCATAGACTTCTTTCTCACCAAATTGTCCCTTTTCCCAGCACACTGCTTCCAAGAACTCACAATCCGTGGGTCCTGGCGAAAACCAGTTGGTGACTTTGAACGGAGCGGTGAGGTCCGGGAGTGTGTGGCATCTGAAAATGAGCTTATGTTCTGGATTTGGAAGGTTGTGAAATTCAAATGAGTATAAACACGACTGTTTTTCCTTGACACGCAACGCGGAGCCGCAACGCCTCTGACGGAACTTGTCAAAAACGAAATTTGAGCTAGGCTAGTCATGTTTGGGCTTGTTTTGAAGCTCACAACGCGTCAATTACCAATTTCAAAACACAAACTCGGAATTGTCAAGTCAAAAGCTTCAAAATGAGCTTAAACACTTTGGCCAGTTCAGTTAGACGCGTCGCGGTCGCGTTGCGTTTATCTAATCCTAGATATGATTGGGGCTTATTTTGAAGCTCTGAACCCGTTTTTCAACAATTTGCAGTCTCAAATTCAAGTTTGTCTTGTCAGAAACTTCAGAATGCGGCCAAAAACGACTAGGTTAGCTCGCCTTTGAGCTTTTGGCTAGTTCCGTTCGACGCGTCGCGGTCGCGTTGTCTTTTACCAATCTTAGTTATGTTTGGGCTTGTTATAAAGCTCTGACAGCGTTAATCAACAATTTTCACAGGAAAATTCAGTTGTGTCAAGGCAAAAGCTTCAAAATGAGCCTAAACACGGTACTATTTGGTTAACTTAAGATTTTGAGAAGTTCCGTTAGACGCGTCGCGGTCGTGCTGCGTGTGTCCGAGTCAAGTTGTGTTTAGGCTCATTTTGAAGCTCTAAATCTCCCAAATTCAAATTTTCTACTCACCGCCCTTTACAAGTCCTTCCCTCCTTCTCCTCTACCACTCGAAACGTTCCATTCACCAATTCGGTAAACGGTTTGAAGTTTT</canonical>
            <polymorphic>GAAAACCTTTTTTTTTCCAATTACAATCGATATTTTGACCTACTTCGGCAGAATCTGTGTATGAATCCATCCATAGACTTCTTTCTCACCAAATTGTCCCTTTTCCCAGCACACTGCTTCCAAGAACTCACAATCCGTGGGTCCTGGCGAAAACCAGTTGGTGACTTTGAACGGAGCGGTGAGGTCCGGGAGTGTGTGGCATCTGAAAATGAGCTTATGTTCTGGATTTGGAAGGTTGTGAAATTCAAATGAGTATAAACACGACTGTTTTTCCTTGACACGCAACGCGGAGCCGCAACGCCTCTGACGGAACTTGTCAAAAACGAAATTTGAGCTAGGCTAGTCATGTTTGGGCTTGTTTTGAAGCTCACAACGCGTCAATTACCAATTTCAAAACACAAACTCGGAATTGTCAAGTCAAAAGCTTCAAAATGAGCTTAAACACTTTGGCCAGTTCAGTTAGACGCGTCGCGGTCGCGTTGCGTTTATCTAATCCTAGWTATGATTGGGGCTTATTTTGAAGCTCTGAACCCGTTTTTCAACAATTTGCAGTCTCAAATTCAAGTTTGTCTTGTCAGAAACTTCAGAATGCGGCCAAAAACGACTAGGTTAGCTCGCCTTTGAGCTTTTGGCTAGTTCCGTTCGACGCGTCGCGGTCGCGTTGTCTTTTACCAATCTTAGTTATGTTTGGGCTTGTTATAAAGCTCTGACAGCGTTAATCAACAATTTTCACAGGAAAATTCAGTTGTGTCAAGGCAAAAGCTTCAAAATGAGCCTAAACACGGTACTATTTGGTTAACTTAAGATTTTGAGAAGTTCCGTTAGACGCGTCGCGGTCGTGCTGCGTGTGTCCGAGTCAAGTTGTGTTTAGGCTCATTTTGAAGCTCTAAATCTCCCAAATTCAAATTTTCTACTCACCGCCCTTTACAAGTCCTTCCCTCCTTCTCCTCTACCACTCGAAACGTTCCATTCACCAATTCGGTAAACGGTTTGAAGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGTGTGGCATCTGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGACTGCAAATTGTTGAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>365</pcr_amplicon_size>
		<canonical_amplicon>AGTGTGTGGCATCTGAAAATGAGCTTATGTTCTGGATTTGGAAGGTTGTGAAATTCAAATGAGTATAAACACGACTGTTTTTCCTTGACACGCAACGCGGAGCCGCAACGCCTCTGACGGAACTTGTCAAAAACGAAATTTGAGCTAGGCTAGTCATGTTTGGGCTTGTTTTGAAGCTCACAACGCGTCAATTACCAATTTCAAAACACAAACTCGGAATTGTCAAGTCAAAAGCTTCAAAATGAGCTTAAACACTTTGGCCAGTTCAGTTAGACGCGTCGCGGTCGCGTTGCGTTTATCTAATCCTAGATATGATTGGGGCTTATTTTGAAGCTCTGAACCCGTTTTTCAACAATTTGCAGTCT</canonical_amplicon>
		<polymorphic_amplicon>AGTGTGTGGCATCTGAAAATGAGCTTATGTTCTGGATTTGGAAGGTTGTGAAATTCAAATGAGTATAAACACGACTGTTTTTCCTTGACACGCAACGCGGAGCCGCAACGCCTCTGACGGAACTTGTCAAAAACGAAATTTGAGCTAGGCTAGTCATGTTTGGGCTTGTTTTGAAGCTCACAACGCGTCAATTACCAATTTCAAAACACAAACTCGGAATTGTCAAGTCAAAAGCTTCAAAATGAGCTTAAACACTTTGGCCAGTTCAGTTAGACGCGTCGCGGTCGCGTTGCGTTTATCTAATCCTAGWTATGATTGGGGCTTATTTTGAAGCTCTGAACCCGTTTTTCAACAATTTGCAGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31709</snp_id>
        <super_contig>c006601016.Contig2</super_contig>
        <contig_pos>10061</contig_pos>
        <strand></strand>
        <context>cttgtcagaa[A/G]cttcaraatg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCGTTTTTCAACAATTTGCAGTCTCAAATTCAAGTTTGTCTTGTCAGAA</left_flank>
        <right_flank>CTTCAGAATGCGGCCAAAAACGACTAGGTTAGCTCGCCTTTGAGCTTTTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTCACCAAATTGTCCCTTTTCCCAGCACACTGCTTCCAAGAACTCACAATCCGTGGGTCCTGGCGAAAACCAGTTGGTGACTTTGAACGGAGCGGTGAGGTCCGGGAGTGTGTGGCATCTGAAAATGAGCTTATGTTCTGGATTTGGAAGGTTGTGAAATTCAAATGAGTATAAACACGACTGTTTTTCCTTGACACGCAACGCGGAGCCGCAACGCCTCTGACGGAACTTGTCAAAAACGAAATTTGAGCTAGGCTAGTCATGTTTGGGCTTGTTTTGAAGCTCACAACGCGTCAATTACCAATTTCAAAACACAAACTCGGAATTGTCAAGTCAAAAGCTTCAAAATGAGCTTAAACACTTTGGCCAGTTCAGTTAGACGCGTCGCGGTCGCGTTGCGTTTATCTAATCCTAGATATGATTGGGGCTTATTTTGAAGCTCTGAACCCGTTTTTCAACAATTTGCAGTCTCAAATTCAAGTTTGTCTTGTCAGAAACTTCAGAATGCGGCCAAAAACGACTAGGTTAGCTCGCCTTTGAGCTTTTGGCTAGTTCCGTTCGACGCGTCGCGGTCGCGTTGTCTTTTACCAATCTTAGTTATGTTTGGGCTTGTTATAAAGCTCTGACAGCGTTAATCAACAATTTTCACAGGAAAATTCAGTTGTGTCAAGGCAAAAGCTTCAAAATGAGCCTAAACACGGTACTATTTGGTTAACTTAAGATTTTGAGAAGTTCCGTTAGACGCGTCGCGGTCGTGCTGCGTGTGTCCGAGTCAAGTTGTGTTTAGGCTCATTTTGAAGCTCTAAATCTCCCAAATTCAAATTTTCTACTCACCGCCCTTTACAAGTCCTTCCCTCCTTCTCCTCTACCACTCGAAACGTTCCATTCACCAATTCGGTAAACGGTTTGAAGTTTTTATTGCAAAATTTCATTTTCGTGTCCTCTACCATAAATGGTTTTATTGTTTCGTCCCATGGATCGAACACTGGCAATGAGC</canonical>
            <polymorphic>TTTCTCACCAAATTGTCCCTTTTCCCAGCACACTGCTTCCAAGAACTCACAATCCGTGGGTCCTGGCGAAAACCAGTTGGTGACTTTGAACGGAGCGGTGAGGTCCGGGAGTGTGTGGCATCTGAAAATGAGCTTATGTTCTGGATTTGGAAGGTTGTGAAATTCAAATGAGTATAAACACGACTGTTTTTCCTTGACACGCAACGCGGAGCCGCAACGCCTCTGACGGAACTTGTCAAAAACGAAATTTGAGCTAGGCTAGTCATGTTTGGGCTTGTTTTGAAGCTCACAACGCGTCAATTACCAATTTCAAAACACAAACTCGGAATTGTCAAGTCAAAAGCTTCAAAATGAGCTTAAACACTTTGGCCAGTTCAGTTAGACGCGTCGCGGTCGCGTTGCGTTTATCTAATCCTAGATATGATTGGGGCTTATTTTGAAGCTCTGAACCCGTTTTTCAACAATTTGCAGTCTCAAATTCAAGTTTGTCTTGTCAGAARCTTCAGAATGCGGCCAAAAACGACTAGGTTAGCTCGCCTTTGAGCTTTTGGCTAGTTCCGTTCGACGCGTCGCGGTCGCGTTGTCTTTTACCAATCTTAGTTATGTTTGGGCTTGTTATAAAGCTCTGACAGCGTTAATCAACAATTTTCACAGGAAAATTCAGTTGTGTCAAGGCAAAAGCTTCAAAATGAGCCTAAACACGGTACTATTTGGTTAACTTAAGATTTTGAGAAGTTCCGTTAGACGCGTCGCGGTCGTGCTGCGTGTGTCCGAGTCAAGTTGTGTTTAGGCTCATTTTGAAGCTCTAAATCTCCCAAATTCAAATTTTCTACTCACCGCCCTTTACAAGTCCTTCCCTCCTTCTCCTCTACCACTCGAAACGTTCCATTCACCAATTCGGTAAACGGTTTGAAGTTTTTATTGCAAAATTTCATTTTCGTGTCCTCTACCATAAATGGTTTTATTGTTTCGTCCCATGGATCGAACACTGGCAATGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCCGTTTTTCAACAATTT</pcr_primer_p1>
		<pcr_primer_p2>AGGAGGGAAGGACTTGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>415</pcr_amplicon_size>
		<canonical_amplicon>AACCCGTTTTTCAACAATTTGCAGTCTCAAATTCAAGTTTGTCTTGTCAGAAACTTCAGAATGCGGCCAAAAACGACTAGGTTAGCTCGCCTTTGAGCTTTTGGCTAGTTCCGTTCGACGCGTCGCGGTCGCGTTGTCTTTTACCAATCTTAGTTATGTTTGGGCTTGTTATAAAGCTCTGACAGCGTTAATCAACAATTTTCACAGGAAAATTCAGTTGTGTCAAGGCAAAAGCTTCAAAATGAGCCTAAACACGGTACTATTTGGTTAACTTAAGATTTTGAGAAGTTCCGTTAGACGCGTCGCGGTCGTGCTGCGTGTGTCCGAGTCAAGTTGTGTTTAGGCTCATTTTGAAGCTCTAAATCTCCCAAATTCAAATTTTCTACTCACCGCCCTTTACAAGTCCTTCCCTCCT</canonical_amplicon>
		<polymorphic_amplicon>AACCCGTTTTTCAACAATTTGCAGTCTCAAATTCAAGTTTGTCTTGTCAGAARCTTCAGAATGCGGCCAAAAACGACTAGGTTAGCTCGCCTTTGAGCTTTTGGCTAGTTCCGTTCGACGCGTCGCGGTCGCGTTGTCTTTTACCAATCTTAGTTATGTTTGGGCTTGTTATAAAGCTCTGACAGCGTTAATCAACAATTTTCACAGGAAAATTCAGTTGTGTCAAGGCAAAAGCTTCAAAATGAGCCTAAACACGGTACTATTTGGTTAACTTAAGATTTTGAGAAGTTCCGTTAGACGCGTCGCGGTCGTGCTGCGTGTGTCCGAGTCAAGTTGTGTTTAGGCTCATTTTGAAGCTCTAAATCTCCCAAATTCAAATTTTCTACTCACCGCCCTTTACAAGTCCTTCCCTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31710</snp_id>
        <super_contig>c006601016.Contig2</super_contig>
        <contig_pos>10067</contig_pos>
        <strand></strand>
        <context>agaarcttca[G/A]aatgcgscca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTCAACAATTTGCAGTCTCAAATTCAAGTTTGTCTTGTCAGAAACTTCA</left_flank>
        <right_flank>AATGCGGCCAAAAACGACTAGGTTAGCTCGCCTTTGAGCTTTTGGCTAGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCAAATTGTCCCTTTTCCCAGCACACTGCTTCCAAGAACTCACAATCCGTGGGTCCTGGCGAAAACCAGTTGGTGACTTTGAACGGAGCGGTGAGGTCCGGGAGTGTGTGGCATCTGAAAATGAGCTTATGTTCTGGATTTGGAAGGTTGTGAAATTCAAATGAGTATAAACACGACTGTTTTTCCTTGACACGCAACGCGGAGCCGCAACGCCTCTGACGGAACTTGTCAAAAACGAAATTTGAGCTAGGCTAGTCATGTTTGGGCTTGTTTTGAAGCTCACAACGCGTCAATTACCAATTTCAAAACACAAACTCGGAATTGTCAAGTCAAAAGCTTCAAAATGAGCTTAAACACTTTGGCCAGTTCAGTTAGACGCGTCGCGGTCGCGTTGCGTTTATCTAATCCTAGATATGATTGGGGCTTATTTTGAAGCTCTGAACCCGTTTTTCAACAATTTGCAGTCTCAAATTCAAGTTTGTCTTGTCAGAAACTTCAGAATGCGGCCAAAAACGACTAGGTTAGCTCGCCTTTGAGCTTTTGGCTAGTTCCGTTCGACGCGTCGCGGTCGCGTTGTCTTTTACCAATCTTAGTTATGTTTGGGCTTGTTATAAAGCTCTGACAGCGTTAATCAACAATTTTCACAGGAAAATTCAGTTGTGTCAAGGCAAAAGCTTCAAAATGAGCCTAAACACGGTACTATTTGGTTAACTTAAGATTTTGAGAAGTTCCGTTAGACGCGTCGCGGTCGTGCTGCGTGTGTCCGAGTCAAGTTGTGTTTAGGCTCATTTTGAAGCTCTAAATCTCCCAAATTCAAATTTTCTACTCACCGCCCTTTACAAGTCCTTCCCTCCTTCTCCTCTACCACTCGAAACGTTCCATTCACCAATTCGGTAAACGGTTTGAAGTTTTTATTGCAAAATTTCATTTTCGTGTCCTCTACCATAAATGGTTTTATTGTTTCGTCCCATGGATCGAACACTGGCAATGAGCAATCAT</canonical>
            <polymorphic>ACCAAATTGTCCCTTTTCCCAGCACACTGCTTCCAAGAACTCACAATCCGTGGGTCCTGGCGAAAACCAGTTGGTGACTTTGAACGGAGCGGTGAGGTCCGGGAGTGTGTGGCATCTGAAAATGAGCTTATGTTCTGGATTTGGAAGGTTGTGAAATTCAAATGAGTATAAACACGACTGTTTTTCCTTGACACGCAACGCGGAGCCGCAACGCCTCTGACGGAACTTGTCAAAAACGAAATTTGAGCTAGGCTAGTCATGTTTGGGCTTGTTTTGAAGCTCACAACGCGTCAATTACCAATTTCAAAACACAAACTCGGAATTGTCAAGTCAAAAGCTTCAAAATGAGCTTAAACACTTTGGCCAGTTCAGTTAGACGCGTCGCGGTCGCGTTGCGTTTATCTAATCCTAGATATGATTGGGGCTTATTTTGAAGCTCTGAACCCGTTTTTCAACAATTTGCAGTCTCAAATTCAAGTTTGTCTTGTCAGAAACTTCARAATGCGGCCAAAAACGACTAGGTTAGCTCGCCTTTGAGCTTTTGGCTAGTTCCGTTCGACGCGTCGCGGTCGCGTTGTCTTTTACCAATCTTAGTTATGTTTGGGCTTGTTATAAAGCTCTGACAGCGTTAATCAACAATTTTCACAGGAAAATTCAGTTGTGTCAAGGCAAAAGCTTCAAAATGAGCCTAAACACGGTACTATTTGGTTAACTTAAGATTTTGAGAAGTTCCGTTAGACGCGTCGCGGTCGTGCTGCGTGTGTCCGAGTCAAGTTGTGTTTAGGCTCATTTTGAAGCTCTAAATCTCCCAAATTCAAATTTTCTACTCACCGCCCTTTACAAGTCCTTCCCTCCTTCTCCTCTACCACTCGAAACGTTCCATTCACCAATTCGGTAAACGGTTTGAAGTTTTTATTGCAAAATTTCATTTTCGTGTCCTCTACCATAAATGGTTTTATTGTTTCGTCCCATGGATCGAACACTGGCAATGAGCAATCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>234 145 122 121 117 101 101 50 9</canonical_bands>
                <polymorphic_bands>234 145 131 121 117 101 101 50</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAACAATTTGCAGTCTC</pcr_primer_p1>
		<pcr_primer_p2>AAGGAGGGAAGGACTTGTAA</pcr_primer_p2>
		<pcr_amplicon_size>409</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAACAATTTGCAGTCTCAAATTCAAGTTTGTCTTGTCAGAAACTTCAGAATGCGGCCAAAAACGACTAGGTTAGCTCGCCTTTGAGCTTTTGGCTAGTTCCGTTCGACGCGTCGCGGTCGCGTTGTCTTTTACCAATCTTAGTTATGTTTGGGCTTGTTATAAAGCTCTGACAGCGTTAATCAACAATTTTCACAGGAAAATTCAGTTGTGTCAAGGCAAAAGCTTCAAAATGAGCCTAAACACGGTACTATTTGGTTAACTTAAGATTTTGAGAAGTTCCGTTAGACGCGTCGCGGTCGTGCTGCGTGTGTCCGAGTCAAGTTGTGTTTAGGCTCATTTTGAAGCTCTAAATCTCCCAAATTCAAATTTTCTACTCACCGCCCTTTACAAGTCCTTCCCTCCTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAACAATTTGCAGTCTCAAATTCAAGTTTGTCTTGTCAGAAACTTCARAATGCGGCCAAAAACGACTAGGTTAGCTCGCCTTTGAGCTTTTGGCTAGTTCCGTTCGACGCGTCGCGGTCGCGTTGTCTTTTACCAATCTTAGTTATGTTTGGGCTTGTTATAAAGCTCTGACAGCGTTAATCAACAATTTTCACAGGAAAATTCAGTTGTGTCAAGGCAAAAGCTTCAAAATGAGCCTAAACACGGTACTATTTGGTTAACTTAAGATTTTGAGAAGTTCCGTTAGACGCGTCGCGGTCGTGCTGCGTGTGTCCGAGTCAAGTTGTGTTTAGGCTCATTTTGAAGCTCTAAATCTCCCAAATTCAAATTTTCTACTCACCGCCCTTTACAAGTCCTTCCCTCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31711</snp_id>
        <super_contig>c006601016.Contig2</super_contig>
        <contig_pos>10074</contig_pos>
        <strand></strand>
        <context>tcaraatgcg[G/C]ccaaaaacga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AATTTGCAGTCTCAAATTCAAGTTTGTCTTGTCAGAAACTTCAGAATGCG</left_flank>
        <right_flank>CCAAAAACGACTAGGTTAGCTCGCCTTTGAGCTTTTGGCTAGTTCCGTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTCCCTTTTCCCAGCACACTGCTTCCAAGAACTCACAATCCGTGGGTCCTGGCGAAAACCAGTTGGTGACTTTGAACGGAGCGGTGAGGTCCGGGAGTGTGTGGCATCTGAAAATGAGCTTATGTTCTGGATTTGGAAGGTTGTGAAATTCAAATGAGTATAAACACGACTGTTTTTCCTTGACACGCAACGCGGAGCCGCAACGCCTCTGACGGAACTTGTCAAAAACGAAATTTGAGCTAGGCTAGTCATGTTTGGGCTTGTTTTGAAGCTCACAACGCGTCAATTACCAATTTCAAAACACAAACTCGGAATTGTCAAGTCAAAAGCTTCAAAATGAGCTTAAACACTTTGGCCAGTTCAGTTAGACGCGTCGCGGTCGCGTTGCGTTTATCTAATCCTAGATATGATTGGGGCTTATTTTGAAGCTCTGAACCCGTTTTTCAACAATTTGCAGTCTCAAATTCAAGTTTGTCTTGTCAGAAACTTCAGAATGCGGCCAAAAACGACTAGGTTAGCTCGCCTTTGAGCTTTTGGCTAGTTCCGTTCGACGCGTCGCGGTCGCGTTGTCTTTTACCAATCTTAGTTATGTTTGGGCTTGTTATAAAGCTCTGACAGCGTTAATCAACAATTTTCACAGGAAAATTCAGTTGTGTCAAGGCAAAAGCTTCAAAATGAGCCTAAACACGGTACTATTTGGTTAACTTAAGATTTTGAGAAGTTCCGTTAGACGCGTCGCGGTCGTGCTGCGTGTGTCCGAGTCAAGTTGTGTTTAGGCTCATTTTGAAGCTCTAAATCTCCCAAATTCAAATTTTCTACTCACCGCCCTTTACAAGTCCTTCCCTCCTTCTCCTCTACCACTCGAAACGTTCCATTCACCAATTCGGTAAACGGTTTGAAGTTTTTATTGCAAAATTTCATTTTCGTGTCCTCTACCATAAATGGTTTTATTGTTTCGTCCCATGGATCGAACACTGGCAATGAGCAATCATCTTGGTA</canonical>
            <polymorphic>TGTCCCTTTTCCCAGCACACTGCTTCCAAGAACTCACAATCCGTGGGTCCTGGCGAAAACCAGTTGGTGACTTTGAACGGAGCGGTGAGGTCCGGGAGTGTGTGGCATCTGAAAATGAGCTTATGTTCTGGATTTGGAAGGTTGTGAAATTCAAATGAGTATAAACACGACTGTTTTTCCTTGACACGCAACGCGGAGCCGCAACGCCTCTGACGGAACTTGTCAAAAACGAAATTTGAGCTAGGCTAGTCATGTTTGGGCTTGTTTTGAAGCTCACAACGCGTCAATTACCAATTTCAAAACACAAACTCGGAATTGTCAAGTCAAAAGCTTCAAAATGAGCTTAAACACTTTGGCCAGTTCAGTTAGACGCGTCGCGGTCGCGTTGCGTTTATCTAATCCTAGATATGATTGGGGCTTATTTTGAAGCTCTGAACCCGTTTTTCAACAATTTGCAGTCTCAAATTCAAGTTTGTCTTGTCAGAAACTTCAGAATGCGSCCAAAAACGACTAGGTTAGCTCGCCTTTGAGCTTTTGGCTAGTTCCGTTCGACGCGTCGCGGTCGCGTTGTCTTTTACCAATCTTAGTTATGTTTGGGCTTGTTATAAAGCTCTGACAGCGTTAATCAACAATTTTCACAGGAAAATTCAGTTGTGTCAAGGCAAAAGCTTCAAAATGAGCCTAAACACGGTACTATTTGGTTAACTTAAGATTTTGAGAAGTTCCGTTAGACGCGTCGCGGTCGTGCTGCGTGTGTCCGAGTCAAGTTGTGTTTAGGCTCATTTTGAAGCTCTAAATCTCCCAAATTCAAATTTTCTACTCACCGCCCTTTACAAGTCCTTCCCTCCTTCTCCTCTACCACTCGAAACGTTCCATTCACCAATTCGGTAAACGGTTTGAAGTTTTTATTGCAAAATTTCATTTTCGTGTCCTCTACCATAAATGGTTTTATTGTTTCGTCCCATGGATCGAACACTGGCAATGAGCAATCATCTTGGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 356 144</canonical_bands>
                <polymorphic_bands>644 356</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>299 250 250 201</canonical_bands>
                <polymorphic_bands>549 250 201</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 354 144</canonical_bands>
                <polymorphic_bands>646 354</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>210 119 98 79 71 61 60 58 58 42 19 15 14 12 12 12 12 12 12 12 7 5</canonical_bands>
                <polymorphic_bands>210 119 98 90 79 61 60 58 58 42 15 14 12 12 12 12 12 12 12 7 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>500 299 201</canonical_bands>
                <polymorphic_bands>799 201</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAACAATTTGCAGTCTC</pcr_primer_p1>
		<pcr_primer_p2>AAGGAGGGAAGGACTTGTAA</pcr_primer_p2>
		<pcr_amplicon_size>409</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAACAATTTGCAGTCTCAAATTCAAGTTTGTCTTGTCAGAAACTTCAGAATGCGGCCAAAAACGACTAGGTTAGCTCGCCTTTGAGCTTTTGGCTAGTTCCGTTCGACGCGTCGCGGTCGCGTTGTCTTTTACCAATCTTAGTTATGTTTGGGCTTGTTATAAAGCTCTGACAGCGTTAATCAACAATTTTCACAGGAAAATTCAGTTGTGTCAAGGCAAAAGCTTCAAAATGAGCCTAAACACGGTACTATTTGGTTAACTTAAGATTTTGAGAAGTTCCGTTAGACGCGTCGCGGTCGTGCTGCGTGTGTCCGAGTCAAGTTGTGTTTAGGCTCATTTTGAAGCTCTAAATCTCCCAAATTCAAATTTTCTACTCACCGCCCTTTACAAGTCCTTCCCTCCTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAACAATTTGCAGTCTCAAATTCAAGTTTGTCTTGTCAGAAACTTCAGAATGCGSCCAAAAACGACTAGGTTAGCTCGCCTTTGAGCTTTTGGCTAGTTCCGTTCGACGCGTCGCGGTCGCGTTGTCTTTTACCAATCTTAGTTATGTTTGGGCTTGTTATAAAGCTCTGACAGCGTTAATCAACAATTTTCACAGGAAAATTCAGTTGTGTCAAGGCAAAAGCTTCAAAATGAGCCTAAACACGGTACTATTTGGTTAACTTAAGATTTTGAGAAGTTCCGTTAGACGCGTCGCGGTCGTGCTGCGTGTGTCCGAGTCAAGTTGTGTTTAGGCTCATTTTGAAGCTCTAAATCTCCCAAATTCAAATTTTCTACTCACCGCCCTTTACAAGTCCTTCCCTCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31712</snp_id>
        <super_contig>c006601016.Contig2</super_contig>
        <contig_pos>10099</contig_pos>
        <strand></strand>
        <context>gttagctcgc[C/T]tttgagcttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCTTGTCAGAAACTTCAGAATGCGGCCAAAAACGACTAGGTTAGCTCGC</left_flank>
        <right_flank>TTTGAGCTTTTGGCTAGTTCCGTTCGACGCGTCGCGGTCGCGTTGTCTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAGAACTCACAATCCGTGGGTCCTGGCGAAAACCAGTTGGTGACTTTGAACGGAGCGGTGAGGTCCGGGAGTGTGTGGCATCTGAAAATGAGCTTATGTTCTGGATTTGGAAGGTTGTGAAATTCAAATGAGTATAAACACGACTGTTTTTCCTTGACACGCAACGCGGAGCCGCAACGCCTCTGACGGAACTTGTCAAAAACGAAATTTGAGCTAGGCTAGTCATGTTTGGGCTTGTTTTGAAGCTCACAACGCGTCAATTACCAATTTCAAAACACAAACTCGGAATTGTCAAGTCAAAAGCTTCAAAATGAGCTTAAACACTTTGGCCAGTTCAGTTAGACGCGTCGCGGTCGCGTTGCGTTTATCTAATCCTAGATATGATTGGGGCTTATTTTGAAGCTCTGAACCCGTTTTTCAACAATTTGCAGTCTCAAATTCAAGTTTGTCTTGTCAGAAACTTCAGAATGCGGCCAAAAACGACTAGGTTAGCTCGCCTTTGAGCTTTTGGCTAGTTCCGTTCGACGCGTCGCGGTCGCGTTGTCTTTTACCAATCTTAGTTATGTTTGGGCTTGTTATAAAGCTCTGACAGCGTTAATCAACAATTTTCACAGGAAAATTCAGTTGTGTCAAGGCAAAAGCTTCAAAATGAGCCTAAACACGGTACTATTTGGTTAACTTAAGATTTTGAGAAGTTCCGTTAGACGCGTCGCGGTCGTGCTGCGTGTGTCCGAGTCAAGTTGTGTTTAGGCTCATTTTGAAGCTCTAAATCTCCCAAATTCAAATTTTCTACTCACCGCCCTTTACAAGTCCTTCCCTCCTTCTCCTCTACCACTCGAAACGTTCCATTCACCAATTCGGTAAACGGTTTGAAGTTTTTATTGCAAAATTTCATTTTCGTGTCCTCTACCATAAATGGTTTTATTGTTTCGTCCCATGGATCGAACACTGGCAATGAGCAATCATCTTGGTATTTTGAATCGTTTTGTATTTCTGAT</canonical>
            <polymorphic>CCAAGAACTCACAATCCGTGGGTCCTGGCGAAAACCAGTTGGTGACTTTGAACGGAGCGGTGAGGTCCGGGAGTGTGTGGCATCTGAAAATGAGCTTATGTTCTGGATTTGGAAGGTTGTGAAATTCAAATGAGTATAAACACGACTGTTTTTCCTTGACACGCAACGCGGAGCCGCAACGCCTCTGACGGAACTTGTCAAAAACGAAATTTGAGCTAGGCTAGTCATGTTTGGGCTTGTTTTGAAGCTCACAACGCGTCAATTACCAATTTCAAAACACAAACTCGGAATTGTCAAGTCAAAAGCTTCAAAATGAGCTTAAACACTTTGGCCAGTTCAGTTAGACGCGTCGCGGTCGCGTTGCGTTTATCTAATCCTAGATATGATTGGGGCTTATTTTGAAGCTCTGAACCCGTTTTTCAACAATTTGCAGTCTCAAATTCAAGTTTGTCTTGTCAGAAACTTCAGAATGCGGCCAAAAACGACTAGGTTAGCTCGCYTTTGAGCTTTTGGCTAGTTCCGTTCGACGCGTCGCGGTCGCGTTGTCTTTTACCAATCTTAGTTATGTTTGGGCTTGTTATAAAGCTCTGACAGCGTTAATCAACAATTTTCACAGGAAAATTCAGTTGTGTCAAGGCAAAAGCTTCAAAATGAGCCTAAACACGGTACTATTTGGTTAACTTAAGATTTTGAGAAGTTCCGTTAGACGCGTCGCGGTCGTGCTGCGTGTGTCCGAGTCAAGTTGTGTTTAGGCTCATTTTGAAGCTCTAAATCTCCCAAATTCAAATTTTCTACTCACCGCCCTTTACAAGTCCTTCCCTCCTTCTCCTCTACCACTCGAAACGTTCCATTCACCAATTCGGTAAACGGTTTGAAGTTTTTATTGCAAAATTTCATTTTCGTGTCCTCTACCATAAATGGTTTTATTGTTTCGTCCCATGGATCGAACACTGGCAATGAGCAATCATCTTGGTATTTTGAATCGTTTTGTATTTCTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAACAATTTGCAGTCTC</pcr_primer_p1>
		<pcr_primer_p2>AAGGAGGGAAGGACTTGTAA</pcr_primer_p2>
		<pcr_amplicon_size>409</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAACAATTTGCAGTCTCAAATTCAAGTTTGTCTTGTCAGAAACTTCAGAATGCGGCCAAAAACGACTAGGTTAGCTCGCCTTTGAGCTTTTGGCTAGTTCCGTTCGACGCGTCGCGGTCGCGTTGTCTTTTACCAATCTTAGTTATGTTTGGGCTTGTTATAAAGCTCTGACAGCGTTAATCAACAATTTTCACAGGAAAATTCAGTTGTGTCAAGGCAAAAGCTTCAAAATGAGCCTAAACACGGTACTATTTGGTTAACTTAAGATTTTGAGAAGTTCCGTTAGACGCGTCGCGGTCGTGCTGCGTGTGTCCGAGTCAAGTTGTGTTTAGGCTCATTTTGAAGCTCTAAATCTCCCAAATTCAAATTTTCTACTCACCGCCCTTTACAAGTCCTTCCCTCCTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAACAATTTGCAGTCTCAAATTCAAGTTTGTCTTGTCAGAAACTTCAGAATGCGGCCAAAAACGACTAGGTTAGCTCGCYTTTGAGCTTTTGGCTAGTTCCGTTCGACGCGTCGCGGTCGCGTTGTCTTTTACCAATCTTAGTTATGTTTGGGCTTGTTATAAAGCTCTGACAGCGTTAATCAACAATTTTCACAGGAAAATTCAGTTGTGTCAAGGCAAAAGCTTCAAAATGAGCCTAAACACGGTACTATTTGGTTAACTTAAGATTTTGAGAAGTTCCGTTAGACGCGTCGCGGTCGTGCTGCGTGTGTCCGAGTCAAGTTGTGTTTAGGCTCATTTTGAAGCTCTAAATCTCCCAAATTCAAATTTTCTACTCACCGCCCTTTACAAGTCCTTCCCTCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31713</snp_id>
        <super_contig>c006601016.Contig2</super_contig>
        <contig_pos>10189</contig_pos>
        <strand></strand>
        <context>ataaagctct[G/A]acaGCGTTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GCGTTGTCTTTTACCAATCTTAGTTATGTTTGGGCTTGTTATAAAGCTCT</left_flank>
        <right_flank>ACAGCGTTAATCAACAATTTTCACAGGAAAATTCAGTTGTGTCAAGGCAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGCTTATGTTCTGGATTTGGAAGGTTGTGAAATTCAAATGAGTATAAACACGACTGTTTTTCCTTGACACGCAACGCGGAGCCGCAACGCCTCTGACGGAACTTGTCAAAAACGAAATTTGAGCTAGGCTAGTCATGTTTGGGCTTGTTTTGAAGCTCACAACGCGTCAATTACCAATTTCAAAACACAAACTCGGAATTGTCAAGTCAAAAGCTTCAAAATGAGCTTAAACACTTTGGCCAGTTCAGTTAGACGCGTCGCGGTCGCGTTGCGTTTATCTAATCCTAGATATGATTGGGGCTTATTTTGAAGCTCTGAACCCGTTTTTCAACAATTTGCAGTCTCAAATTCAAGTTTGTCTTGTCAGAAACTTCAGAATGCGGCCAAAAACGACTAGGTTAGCTCGCCTTTGAGCTTTTGGCTAGTTCCGTTCGACGCGTCGCGGTCGCGTTGTCTTTTACCAATCTTAGTTATGTTTGGGCTTGTTATAAAGCTCTGACAGCGTTAATCAACAATTTTCACAGGAAAATTCAGTTGTGTCAAGGCAAAAGCTTCAAAATGAGCCTAAACACGGTACTATTTGGTTAACTTAAGATTTTGAGAAGTTCCGTTAGACGCGTCGCGGTCGTGCTGCGTGTGTCCGAGTCAAGTTGTGTTTAGGCTCATTTTGAAGCTCTAAATCTCCCAAATTCAAATTTTCTACTCACCGCCCTTTACAAGTCCTTCCCTCCTTCTCCTCTACCACTCGAAACGTTCCATTCACCAATTCGGTAAACGGTTTGAAGTTTTTATTGCAAAATTTCATTTTCGTGTCCTCTACCATAAATGGTTTTATTGTTTCGTCCCATGGATCGAACACTGGCAATGAGCAATCATCTTGGTATTTTGAATCGTTTTGTATTTCTGATTTTTCCGATTTTTCTGAGGTTTCAGTTTTTGTAGGGGTTACTGTAGTGTTGAAGTAGTTCGAGTAGCTGGGCAGGGACTGGGATACTGTT</canonical>
            <polymorphic>TGAGCTTATGTTCTGGATTTGGAAGGTTGTGAAATTCAAATGAGTATAAACACGACTGTTTTTCCTTGACACGCAACGCGGAGCCGCAACGCCTCTGACGGAACTTGTCAAAAACGAAATTTGAGCTAGGCTAGTCATGTTTGGGCTTGTTTTGAAGCTCACAACGCGTCAATTACCAATTTCAAAACACAAACTCGGAATTGTCAAGTCAAAAGCTTCAAAATGAGCTTAAACACTTTGGCCAGTTCAGTTAGACGCGTCGCGGTCGCGTTGCGTTTATCTAATCCTAGATATGATTGGGGCTTATTTTGAAGCTCTGAACCCGTTTTTCAACAATTTGCAGTCTCAAATTCAAGTTTGTCTTGTCAGAAACTTCAGAATGCGGCCAAAAACGACTAGGTTAGCTCGCCTTTGAGCTTTTGGCTAGTTCCGTTCGACGCGTCGCGGTCGCGTTGTCTTTTACCAATCTTAGTTATGTTTGGGCTTGTTATAAAGCTCTRACAGCGTTAATCAACAATTTTCACAGGAAAATTCAGTTGTGTCAAGGCAAAAGCTTCAAAATGAGCCTAAACACGGTACTATTTGGTTAACTTAAGATTTTGAGAAGTTCCGTTAGACGCGTCGCGGTCGTGCTGCGTGTGTCCGAGTCAAGTTGTGTTTAGGCTCATTTTGAAGCTCTAAATCTCCCAAATTCAAATTTTCTACTCACCGCCCTTTACAAGTCCTTCCCTCCTTCTCCTCTACCACTCGAAACGTTCCATTCACCAATTCGGTAAACGGTTTGAAGTTTTTATTGCAAAATTTCATTTTCGTGTCCTCTACCATAAATGGTTTTATTGTTTCGTCCCATGGATCGAACACTGGCAATGAGCAATCATCTTGGTATTTTGAATCGTTTTGTATTTCTGATTTTTCCGATTTTTCTGAGGTTTCAGTTTTTGTAGGGGTTACTGTAGTGTTGAAGTAGTTCGAGTAGCTGGGCAGGGACTGGGATACTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>263 145 122 121 101 96 75 50 9 9 9</canonical_bands>
                <polymorphic_bands>267 263 121 101 96 75 50 9 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAACAATTTGCAGTCTC</pcr_primer_p1>
		<pcr_primer_p2>AAGGAGGGAAGGACTTGTAA</pcr_primer_p2>
		<pcr_amplicon_size>409</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAACAATTTGCAGTCTCAAATTCAAGTTTGTCTTGTCAGAAACTTCAGAATGCGGCCAAAAACGACTAGGTTAGCTCGCCTTTGAGCTTTTGGCTAGTTCCGTTCGACGCGTCGCGGTCGCGTTGTCTTTTACCAATCTTAGTTATGTTTGGGCTTGTTATAAAGCTCTGACAGCGTTAATCAACAATTTTCACAGGAAAATTCAGTTGTGTCAAGGCAAAAGCTTCAAAATGAGCCTAAACACGGTACTATTTGGTTAACTTAAGATTTTGAGAAGTTCCGTTAGACGCGTCGCGGTCGTGCTGCGTGTGTCCGAGTCAAGTTGTGTTTAGGCTCATTTTGAAGCTCTAAATCTCCCAAATTCAAATTTTCTACTCACCGCCCTTTACAAGTCCTTCCCTCCTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAACAATTTGCAGTCTCAAATTCAAGTTTGTCTTGTCAGAAACTTCAGAATGCGGCCAAAAACGACTAGGTTAGCTCGCCTTTGAGCTTTTGGCTAGTTCCGTTCGACGCGTCGCGGTCGCGTTGTCTTTTACCAATCTTAGTTATGTTTGGGCTTGTTATAAAGCTCTRACAGCGTTAATCAACAATTTTCACAGGAAAATTCAGTTGTGTCAAGGCAAAAGCTTCAAAATGAGCCTAAACACGGTACTATTTGGTTAACTTAAGATTTTGAGAAGTTCCGTTAGACGCGTCGCGGTCGTGCTGCGTGTGTCCGAGTCAAGTTGTGTTTAGGCTCATTTTGAAGCTCTAAATCTCCCAAATTCAAATTTTCTACTCACCGCCCTTTACAAGTCCTTCCCTCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31714</snp_id>
        <super_contig>c006601016.Contig2</super_contig>
        <contig_pos>10268</contig_pos>
        <strand></strand>
        <context>aaacacggta[C/T]tatttggtta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTCAGTTGTGTCAAGGCAAAAGCTTCAAAATGAGCCTAAACACGGTA</left_flank>
        <right_flank>TATTTGGTTAACTTAAGATTTTGAGAAGTTCCGTTAGACGCGTCGCGGTC</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGCCGCAACGCCTCTGACGGAACTTGTCAAAAACGAAATTTGAGCTAGGCTAGTCATGTTTGGGCTTGTTTTGAAGCTCACAACGCGTCAATTACCAATTTCAAAACACAAACTCGGAATTGTCAAGTCAAAAGCTTCAAAATGAGCTTAAACACTTTGGCCAGTTCAGTTAGACGCGTCGCGGTCGCGTTGCGTTTATCTAATCCTAGATATGATTGGGGCTTATTTTGAAGCTCTGAACCCGTTTTTCAACAATTTGCAGTCTCAAATTCAAGTTTGTCTTGTCAGAAACTTCAGAATGCGGCCAAAAACGACTAGGTTAGCTCGCCTTTGAGCTTTTGGCTAGTTCCGTTCGACGCGTCGCGGTCGCGTTGTCTTTTACCAATCTTAGTTATGTTTGGGCTTGTTATAAAGCTCTGACAGCGTTAATCAACAATTTTCACAGGAAAATTCAGTTGTGTCAAGGCAAAAGCTTCAAAATGAGCCTAAACACGGTACTATTTGGTTAACTTAAGATTTTGAGAAGTTCCGTTAGACGCGTCGCGGTCGTGCTGCGTGTGTCCGAGTCAAGTTGTGTTTAGGCTCATTTTGAAGCTCTAAATCTCCCAAATTCAAATTTTCTACTCACCGCCCTTTACAAGTCCTTCCCTCCTTCTCCTCTACCACTCGAAACGTTCCATTCACCAATTCGGTAAACGGTTTGAAGTTTTTATTGCAAAATTTCATTTTCGTGTCCTCTACCATAAATGGTTTTATTGTTTCGTCCCATGGATCGAACACTGGCAATGAGCAATCATCTTGGTATTTTGAATCGTTTTGTATTTCTGATTTTTCCGATTTTTCTGAGGTTTCAGTTTTTGTAGGGGTTACTGTAGTGTTGAAGTAGTTCGAGTAGCTGGGCAGGGACTGGGATACTGTTATGGAATCTGAAAATTTCATTTTTGATATTGCGAGATTCTGAGCTTTAAAACAAAACTAAACACGACAAGGATACGCAA</canonical>
            <polymorphic>GGAGCCGCAACGCCTCTGACGGAACTTGTCAAAAACGAAATTTGAGCTAGGCTAGTCATGTTTGGGCTTGTTTTGAAGCTCACAACGCGTCAATTACCAATTTCAAAACACAAACTCGGAATTGTCAAGTCAAAAGCTTCAAAATGAGCTTAAACACTTTGGCCAGTTCAGTTAGACGCGTCGCGGTCGCGTTGCGTTTATCTAATCCTAGATATGATTGGGGCTTATTTTGAAGCTCTGAACCCGTTTTTCAACAATTTGCAGTCTCAAATTCAAGTTTGTCTTGTCAGAAACTTCAGAATGCGGCCAAAAACGACTAGGTTAGCTCGCCTTTGAGCTTTTGGCTAGTTCCGTTCGACGCGTCGCGGTCGCGTTGTCTTTTACCAATCTTAGTTATGTTTGGGCTTGTTATAAAGCTCTGACAGCGTTAATCAACAATTTTCACAGGAAAATTCAGTTGTGTCAAGGCAAAAGCTTCAAAATGAGCCTAAACACGGTAYTATTTGGTTAACTTAAGATTTTGAGAAGTTCCGTTAGACGCGTCGCGGTCGTGCTGCGTGTGTCCGAGTCAAGTTGTGTTTAGGCTCATTTTGAAGCTCTAAATCTCCCAAATTCAAATTTTCTACTCACCGCCCTTTACAAGTCCTTCCCTCCTTCTCCTCTACCACTCGAAACGTTCCATTCACCAATTCGGTAAACGGTTTGAAGTTTTTATTGCAAAATTTCATTTTCGTGTCCTCTACCATAAATGGTTTTATTGTTTCGTCCCATGGATCGAACACTGGCAATGAGCAATCATCTTGGTATTTTGAATCGTTTTGTATTTCTGATTTTTCCGATTTTTCTGAGGTTTCAGTTTTTGTAGGGGTTACTGTAGTGTTGAAGTAGTTCGAGTAGCTGGGCAGGGACTGGGATACTGTTATGGAATCTGAAAATTTCATTTTTGATATTGCGAGATTCTGAGCTTTAAAACAAAACTAAACACGACAAGGATACGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTTAATCAACAATTTTCACAG</pcr_primer_p1>
		<pcr_primer_p2>GTTTCGAGTGGTAGAGGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTTAATCAACAATTTTCACAGGAAAATTCAGTTGTGTCAAGGCAAAAGCTTCAAAATGAGCCTAAACACGGTACTATTTGGTTAACTTAAGATTTTGAGAAGTTCCGTTAGACGCGTCGCGGTCGTGCTGCGTGTGTCCGAGTCAAGTTGTGTTTAGGCTCATTTTGAAGCTCTAAATCTCCCAAATTCAAATTTTCTACTCACCGCCCTTTACAAGTCCTTCCCTCCTTCTCCTCTACCACTCGAAAC</canonical_amplicon>
		<polymorphic_amplicon>CGTTAATCAACAATTTTCACAGGAAAATTCAGTTGTGTCAAGGCAAAAGCTTCAAAATGAGCCTAAACACGGTAYTATTTGGTTAACTTAAGATTTTGAGAAGTTCCGTTAGACGCGTCGCGGTCGTGCTGCGTGTGTCCGAGTCAAGTTGTGTTTAGGCTCATTTTGAAGCTCTAAATCTCCCAAATTCAAATTTTCTACTCACCGCCCTTTACAAGTCCTTCCCTCCTTCTCCTCTACCACTCGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31715</snp_id>
        <super_contig>c006601016.Contig2</super_contig>
        <contig_pos>12808</contig_pos>
        <strand>+</strand>
        <context>AGACAAAAAG[C/T]CCGGTCTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAAAAAACTATTTTTCATGTATATTCCCATTTTCTACAGACAAAAAG</left_flank>
        <right_flank>CCGGTCTTGTTTGTATTTGTATGTTTTCCAACCATTTTTTATATTTGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCCTAGAAAATCCAAAAAATAGGTCATGGCCTAGAAAATCCAAAAATTAGGTCATGACCTAGAAAATCCAAAGAACTAGGTCATGACCTAGATAAGCCGAAAATTAGGTCATAACCTAGAAAATTCGGAAAATTGGGTCATTCCGAAAAAAAAATATTCTAAAATAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAGTTCTAAAATTCTAAAATTCCAGAAAATTCTAAAATTCCAGAAAATTCTAAAATTCTAAAATTCTAAAATCCTAAAATTCGAAAATCCTAAAATTCTAAAATTCTAAAATTCTAAAATCCTAAAATTCTAAAACTCGAAAATCCTAAAATTCGAAAATCCTAAAAAAATAAAATTTTCTAAAAATCCTGAAAATCGAAAAATCTTGAAAACTCTAAAAATCCAATTTTTTTCAAATTTTCAAAAAAAAAACTATTTTTCATGTATATTCCCATTTTCTACAGACAAAAAGTCCGGTCTTGTTTGTATTTGTATGTTTTCCAACCATTTTTTATATTTGAGAAAGAAGAAGATTCAAAAAAAAACCAAACATTCGATTTTTTGATTTTTTTTAAAATTTCACAAAATTCAAAAAATCAATAATTTTCGGGACATATTGAATCTAAAAATCGGCAAAAAGAAAGGGAGAGCAAGTGACCGTAAAGTGAAGATGATAAATATTGAAAAGTACTGATAGTGATAAGAATGTTAAAGTTTCTATTCTTCACTATTCAAATAGAATACTCTCTCTTATCAGTCACATATCACAATTTTGGGTGCGGTTTTTATGCATATTATTGATTTAATTAGAAATTCTAAGTACATATCAAAAAATCAGAAAAATGATCAAAAATCGAAAAGAAAATCAAAAAATCAAATGATCGAAAATTCAGAAATTCGATAATTACGAAATTTCGAAAATCCCCCTTTTTCGGATTTTCTAGATCATTTTGAACCGTATTAACGGCATTTA</canonical>
            <polymorphic>GGCCTAGAAAATCCAAAAAATAGGTCATGGCCTAGAAAATCCAAAAATTAGGTCATGACCTAGAAAATCCAAAGAACTAGGTCATGACCTAGATAAGCCGAAAATTAGGTCATAACCTAGAAAATTCGGAAAATTGGGTCATTCCGAAAAAAAAATATTCTAAAATAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAGTTCTAAAATTCTAAAATTCCAGAAAATTCTAAAATTCCAGAAAATTCTAAAATTCTAAAATTCTAAAATCCTAAAATTCGAAAATCCTAAAATTCTAAAATTCTAAAATTCTAAAATCCTAAAATTCTAAAACTCGAAAATCCTAAAATTCGAAAATCCTAAAAAAATAAAATTTTCTAAAAATCCTGAAAATCGAAAAATCTTGAAAACTCTAAAAATCCAATTTTTTTCAAATTTTCAAAAAAAAAACTATTTTTCATGTATATTCCCATTTTCTACAGACAAAAAGYCCGGTCTTGTTTGTATTTGTATGTTTTCCAACCATTTTTTATATTTGAGAAAGAAGAAGATTCAAAAAAAAACCAAACATTCGATTTTTTGATTTTTTTTAAAATTTCACAAAATTCAAAAAATCAATAATTTTCGGGACATATTGAATCTAAAAATCGGCAAAAAGAAAGGGAGAGCAAGTGACCGTAAAGTGAAGATGATAAATATTGAAAAGTACTGATAGTGATAAGAATGTTAAAGTTTCTATTCTTCACTATTCAAATAGAATACTCTCTCTTATCAGTCACATATCACAATTTTGGGTGCGGTTTTTATGCATATTATTGATTTAATTAGAAATTCTAAGTACATATCAAAAAATCAGAAAAATGATCAAAAATCGAAAAGAAAATCAAAAAATCAAATGATCGAAAATTCAGAAATTCGATAATTACGAAATTTCGAAAATCCCCCTTTTTCGGATTTTCTAGATCATTTTGAACCGTATTAACGGCATTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNNNGTC</site>
                <isoschizomers>
                    <enzyme>AhdI</enzyme>
                    <enzyme>AspEI</enzyme>
                    <enzyme>Eam1105I</enzyme>
                    <enzyme>EclHKI</enzyme>
                    <enzyme>NruGI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATCGAAAAATCTTGAAAACT</pcr_primer_p1>
		<pcr_primer_p2>AATATGTCCCGAAAATTATTGAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAATCGAAAAATCTTGAAAACTCTAAAAATCCAATTTTTTTCAAATTTTCAAAAAAAAAACTATTTTTCATGTATATTCCCATTTTCTACAGACAAAAAGTCCGGTCTTGTTTGTATTTGTATGTTTTCCAACCATTTTTTATATTTGAGAAAGAAGAAGATTCAAAAAAAAACCAAACATTCGATTTTTTGATTTTTTTTAAAATTTCACAAAATTCAAAAAATCAATAATTTTCGGGACATATT</canonical_amplicon>
		<polymorphic_amplicon>AAAATCGAAAAATCTTGAAAACTCTAAAAATCCAATTTTTTTCAAATTTTCAAAAAAAAAACTATTTTTCATGTATATTCCCATTTTCTACAGACAAAAAGYCCGGTCTTGTTTGTATTTGTATGTTTTCCAACCATTTTTTATATTTGAGAAAGAAGAAGATTCAAAAAAAAACCAAACATTCGATTTTTTGATTTTTTTTAAAATTTCACAAAATTCAAAAAATCAATAATTTTCGGGACATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31716</snp_id>
        <super_contig>c006601016.Contig2</super_contig>
        <contig_pos>27038</contig_pos>
        <strand></strand>
        <context>atttgagaat[G/C]tctcagaagc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CTTCTAGAACCCTTTTGAAGTTTCTAGAACTGTGTGAATAATTTGAGAAT</left_flank>
        <right_flank>TCTCAGAAGCTTTCAAAAGCTTCTGAGAGCTCCTAGAATTTTCTGAATAC</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCAAAAAATCAGAATCTGAAGAATCAGAATCTTCCAGATAGAATCCTGTGGACGTCTTCATCATGGCGACAGTTGATTCAGCCAGCTGTATTTGACCAGCTGGCTGACTTCTGACCCATTGGGGTCTTCTGGGAAGAAGACGTGAGTATGAAGACGTTGGATGAATCGATGACGTCATCTGATGGAATTGGTTGGAAATTGAAGCTGACGCAGAAGTCGATAGACGTGCAGATGACGTCGGATGGAGAGCCAGAAGGCATCTGAAAAATTTTGGAGTGATTTTGGAAATTACAAAAGCTTCTAGATGATTCTAGAAGCGTCTAGAAAACTTTAGACATTCTAGAAAAGTATAAAAAACTGTAGGAGGTTTCAGAAGGATTCTAGAAGATTCTGGAGGAGTTTTGAAAAGCTTAGAGAGTCTGAGAGTCATATAGAATTCTCCAAATTCTTCTAGAACCCTTTTGAAGTTTCTAGAACTGTGTGAATAATTTGAGAATGTCTCAGAAGCTTTCAAAAGCTTCTGAGAGCTCCTAGAATTTTCTGAATACTTCTAGAATTGCGTAGAATCCTCCAGAACCTTCTAGAATGTTCCAGAAGCCTTCTGAAGCTTTCAAAAACGTCTGGAATAGTCCTGAACCTTTCAGAACCCTTCTGAAGCTTTTAGATATTTTTTTTCAATTAAAAGAAAATTACGGTTTCAAAAACCAAATATTATCGCTTGCTGAAATTTCTCTAACTCAAAAAATAATTATTCCCAATTTTTTAAACTCGAAAACTCGACTCAGATTTTTCTAGACACTTCTAACACTTTCTTGTAGTAGCCTTCTGGAGCTTCTCGAGTTTCTAGAATCTTGAAGAGTCGTTAAGAATTTTTCGGGACCTTCCAGAATCATTCTGGAGCTAGAAGCTTCGAGAAACTTCTAGAAACTTCCATGTATCCATTTCATCAAATTTTTTTAGATGAAAATAATTTTTCAAAAAAAATTACGGTTTCAAGA</canonical>
            <polymorphic>ATCCAAAAAATCAGAATCTGAAGAATCAGAATCTTCCAGATAGAATCCTGTGGACGTCTTCATCATGGCGACAGTTGATTCAGCCAGCTGTATTTGACCAGCTGGCTGACTTCTGACCCATTGGGGTCTTCTGGGAAGAAGACGTGAGTATGAAGACGTTGGATGAATCGATGACGTCATCTGATGGAATTGGTTGGAAATTGAAGCTGACGCAGAAGTCGATAGACGTGCAGATGACGTCGGATGGAGAGCCAGAAGGCATCTGAAAAATTTTGGAGTGATTTTGGAAATTACAAAAGCTTCTAGATGATTCTAGAAGCGTCTAGAAAACTTTAGACATTCTAGAAAAGTATAAAAAACTGTAGGAGGTTTCAGAAGGATTCTAGAAGATTCTGGAGGAGTTTTGAAAAGCTTAGAGAGTCTGAGAGTCATATAGAATTCTCCAAATTCTTCTAGAACCCTTTTGAAGTTTCTAGAACTGTGTGAATAATTTGAGAATSTCTCAGAAGCTTTCAAAAGCTTCTGAGAGCTCCTAGAATTTTCTGAATACTTCTAGAATTGCGTAGAATCCTCCAGAACCTTCTAGAATGTTCCAGAAGCCTTCTGAAGCTTTCAAAAACGTCTGGAATAGTCCTGAACCTTTCAGAACCCTTCTGAAGCTTTTAGATATTTTTTTTCAATTAAAAGAAAATTACGGTTTCAAAAACCAAATATTATCGCTTGCTGAAATTTCTCTAACTCAAAAAATAATTATTCCCAATTTTTTAAACTCGAAAACTCGACTCAGATTTTTCTAGACACTTCTAACACTTTCTTGTAGTAGCCTTCTGGAGCTTCTCGAGTTTCTAGAATCTTGAAGAGTCGTTAAGAATTTTTCGGGACCTTCCAGAATCATTCTGGAGCTAGAAGCTTCGAGAAACTTCTAGAAACTTCCATGTATCCATTTCATCAAATTTTTTTAGATGAAAATAATTTTTCAAAAAAAATTACGGTTTCAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGATAGACGTGCAGAT</pcr_primer_p1>
		<pcr_primer_p2>CAACACATTAAAAACTTGAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>823</pcr_amplicon_size>
		<canonical_amplicon>AAGTCGATAGACGTGCAGATGACGTCGGATGGAGAGCCAGAAGGCATCTGAAAAATTTTGGAGTGATTTTGGAAATTACAAAAGCTTCTAGATGATTCTAGAAGCGTCTAGAAAACTTTAGACATTCTAGAAAAGTATAAAAAACTGTAGGAGGTTTCAGAAGGATTCTAGAAGATTCTGGAGGAGTTTTGAAAAGCTTAGAGAGTCTGAGAGTCATATAGAATTCTCCAAATTCTTCTAGAACCCTTTTGAAGTTTCTAGAACTGTGTGAATAATTTGAGAATGTCTCAGAAGCTTTCAAAAGCTTC</canonical_amplicon>
		<polymorphic_amplicon>AAGTCGATAGACGTGCAGATGACGTCGGATGGAGAGCCAGAAGGCATCTGAAAAATTTTGGAGTGATTTTGGAAATTACAAAAGCTTCTAGATGATTCTAGAAGCGTCTAGAAAACTTTAGACATTCTAGAAAAGTATAAAAAACTGTAGGAGGTTTCAGAAGGATTCTAGAAGATTCTGGAGGAGTTTTGAAAAGCTTAGAGAGTCTGAGAGTCATATAGAATTCTCCAAATTCTTCTAGAACCCTTTTGAAGTTTCTAGAACTGTGTGAATAATTTGAGAATSTCTCAGAAGCTTTCAAAAGCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31717</snp_id>
        <super_contig>c006601016.Contig2</super_contig>
        <contig_pos>27141</contig_pos>
        <strand></strand>
        <context>ccagaagcct[T/C]ctgaagcttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTAGAATTGCGTAGAATCCTCCAGAACCTTCTAGAATGTTCCAGAAGCCT</left_flank>
        <right_flank>CTGAAGCTTTCAAAAACGTCTGGAATAGTCCTGAACCTTTCAGAACCCTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCTGACTTCTGACCCATTGGGGTCTTCTGGGAAGAAGACGTGAGTATGAAGACGTTGGATGAATCGATGACGTCATCTGATGGAATTGGTTGGAAATTGAAGCTGACGCAGAAGTCGATAGACGTGCAGATGACGTCGGATGGAGAGCCAGAAGGCATCTGAAAAATTTTGGAGTGATTTTGGAAATTACAAAAGCTTCTAGATGATTCTAGAAGCGTCTAGAAAACTTTAGACATTCTAGAAAAGTATAAAAAACTGTAGGAGGTTTCAGAAGGATTCTAGAAGATTCTGGAGGAGTTTTGAAAAGCTTAGAGAGTCTGAGAGTCATATAGAATTCTCCAAATTCTTCTAGAACCCTTTTGAAGTTTCTAGAACTGTGTGAATAATTTGAGAATGTCTCAGAAGCTTTCAAAAGCTTCTGAGAGCTCCTAGAATTTTCTGAATACTTCTAGAATTGCGTAGAATCCTCCAGAACCTTCTAGAATGTTCCAGAAGCCTTCTGAAGCTTTCAAAAACGTCTGGAATAGTCCTGAACCTTTCAGAACCCTTCTGAAGCTTTTAGATATTTTTTTTCAATTAAAAGAAAATTACGGTTTCAAAAACCAAATATTATCGCTTGCTGAAATTTCTCTAACTCAAAAAATAATTATTCCCAATTTTTTAAACTCGAAAACTCGACTCAGATTTTTCTAGACACTTCTAACACTTTCTTGTAGTAGCCTTCTGGAGCTTCTCGAGTTTCTAGAATCTTGAAGAGTCGTTAAGAATTTTTCGGGACCTTCCAGAATCATTCTGGAGCTAGAAGCTTCGAGAAACTTCTAGAAACTTCCATGTATCCATTTCATCAAATTTTTTTAGATGAAAATAATTTTTCAAAAAAAATTACGGTTTCAAGAAAAAAAAGTGTTTTTTTTCTCAAGTTTTTAATGTGTTGTTTTCATGAAGACTTTAGAAATTTCTGAAAGTTTCTAGAGTCGTCTAGAACCTTCTAGACCCTTC</canonical>
            <polymorphic>GGCTGACTTCTGACCCATTGGGGTCTTCTGGGAAGAAGACGTGAGTATGAAGACGTTGGATGAATCGATGACGTCATCTGATGGAATTGGTTGGAAATTGAAGCTGACGCAGAAGTCGATAGACGTGCAGATGACGTCGGATGGAGAGCCAGAAGGCATCTGAAAAATTTTGGAGTGATTTTGGAAATTACAAAAGCTTCTAGATGATTCTAGAAGCGTCTAGAAAACTTTAGACATTCTAGAAAAGTATAAAAAACTGTAGGAGGTTTCAGAAGGATTCTAGAAGATTCTGGAGGAGTTTTGAAAAGCTTAGAGAGTCTGAGAGTCATATAGAATTCTCCAAATTCTTCTAGAACCCTTTTGAAGTTTCTAGAACTGTGTGAATAATTTGAGAATGTCTCAGAAGCTTTCAAAAGCTTCTGAGAGCTCCTAGAATTTTCTGAATACTTCTAGAATTGCGTAGAATCCTCCAGAACCTTCTAGAATGTTCCAGAAGCCTYCTGAAGCTTTCAAAAACGTCTGGAATAGTCCTGAACCTTTCAGAACCCTTCTGAAGCTTTTAGATATTTTTTTTCAATTAAAAGAAAATTACGGTTTCAAAAACCAAATATTATCGCTTGCTGAAATTTCTCTAACTCAAAAAATAATTATTCCCAATTTTTTAAACTCGAAAACTCGACTCAGATTTTTCTAGACACTTCTAACACTTTCTTGTAGTAGCCTTCTGGAGCTTCTCGAGTTTCTAGAATCTTGAAGAGTCGTTAAGAATTTTTCGGGACCTTCCAGAATCATTCTGGAGCTAGAAGCTTCGAGAAACTTCTAGAAACTTCCATGTATCCATTTCATCAAATTTTTTTAGATGAAAATAATTTTTCAAAAAAAATTACGGTTTCAAGAAAAAAAAGTGTTTTTTTTCTCAAGTTTTTAATGTGTTGTTTTCATGAAGACTTTAGAAATTTCTGAAAGTTTCTAGAGTCGTCTAGAACCTTCTAGACCCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>278 131 110 82 68 61 60 49 40 39 22 20 19 11 10</canonical_bands>
                <polymorphic_bands>278 131 110 101 82 68 60 49 39 22 20 19 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGATAGACGTGCAGAT</pcr_primer_p1>
		<pcr_primer_p2>CAACACATTAAAAACTTGAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>823</pcr_amplicon_size>
		<canonical_amplicon>AAGTCGATAGACGTGCAGATGACGTCGGATGGAGAGCCAGAAGGCATCTGAAAAATTTTGGAGTGATTTTGGAAATTACAAAAGCTTCTAGATGATTCTAGAAGCGTCTAGAAAACTTTAGACATTCTAGAAAAGTATAAAAAACTGTAGGAGGTTTCAGAAGGATTCTAGAAGATTCTGGAGGAGTTTTGAAAAGCTTAGAGAGTCTGAGAGTCATATAGAATTCTCCAAATTCTTCTAGAACCCTTTTGAAGTTTCTAGAACTGTGTGAATAATTTGAGAATGTCTCAGAAGCTTTCAAAAGCTTCTGAGAGCTCCTAGAATTTTCTGAATACTTCTAGAATTGCGTAGAATCCTCCAGAACCTTCTAGAATGTTCCAGAAGCCTTCTGAAGCTTTCAAAAACGTCTGGAATAGTCCTGAACCTTTCAGAACCCTTCTGAAGCTTTTAGATATTTTTTTTCAATTAAAAGAAAATTACGGTTTCAAAAACCAAATATTATCGCTTGCTGAAATTTCTCTAACTCAAAAAATAATTATTCCCAATTTTTTAAACTCGAAAACTCGACTCAGATTTTTCTAGACACTTCTAACACTTTCTTGTAGTAGCCTTCTGGAGCTTCTCGAGTTTCTAGAATCTTGAAGAGTCGTTAAGAATTTTTCGGGACCTTCCAGAATCATTCTGGAGCTAGAAGCTTCGAGAAACTTCTAGAAACTTCCATGTATCCATTTCATCAAATTTTTTTAGATGAAAATAATTTTTCAAAAAAAATTACGGTTTCAAGAAAAAAAAGTGTTTTTTTTCTCAAGTTTTTAATGTGTTG</canonical_amplicon>
		<polymorphic_amplicon>AAGTCGATAGACGTGCAGATGACGTCGGATGGAGAGCCAGAAGGCATCTGAAAAATTTTGGAGTGATTTTGGAAATTACAAAAGCTTCTAGATGATTCTAGAAGCGTCTAGAAAACTTTAGACATTCTAGAAAAGTATAAAAAACTGTAGGAGGTTTCAGAAGGATTCTAGAAGATTCTGGAGGAGTTTTGAAAAGCTTAGAGAGTCTGAGAGTCATATAGAATTCTCCAAATTCTTCTAGAACCCTTTTGAAGTTTCTAGAACTGTGTGAATAATTTGAGAATGTCTCAGAAGCTTTCAAAAGCTTCTGAGAGCTCCTAGAATTTTCTGAATACTTCTAGAATTGCGTAGAATCCTCCAGAACCTTCTAGAATGTTCCAGAAGCCTYCTGAAGCTTTCAAAAACGTCTGGAATAGTCCTGAACCTTTCAGAACCCTTCTGAAGCTTTTAGATATTTTTTTTCAATTAAAAGAAAATTACGGTTTCAAAAACCAAATATTATCGCTTGCTGAAATTTCTCTAACTCAAAAAATAATTATTCCCAATTTTTTAAACTCGAAAACTCGACTCAGATTTTTCTAGACACTTCTAACACTTTCTTGTAGTAGCCTTCTGGAGCTTCTCGAGTTTCTAGAATCTTGAAGAGTCGTTAAGAATTTTTCGGGACCTTCCAGAATCATTCTGGAGCTAGAAGCTTCGAGAAACTTCTAGAAACTTCCATGTATCCATTTCATCAAATTTTTTTAGATGAAAATAATTTTTCAAAAAAAATTACGGTTTCAAGAAAAAAAAGTGTTTTTTTTCTCAAGTTTTTAATGTGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31718</snp_id>
        <super_contig>c006601016.Contig2</super_contig>
        <contig_pos>27161</contig_pos>
        <strand></strand>
        <context>tcaaaaacgt[C/G]tggaatagtc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCAGAACCTTCTAGAATGTTCCAGAAGCCTTCTGAAGCTTTCAAAAACGT</left_flank>
        <right_flank>TGGAATAGTCCTGAACCTTTCAGAACCCTTCTGAAGCTTTTAGATATTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGTCTTCTGGGAAGAAGACGTGAGTATGAAGACGTTGGATGAATCGATGACGTCATCTGATGGAATTGGTTGGAAATTGAAGCTGACGCAGAAGTCGATAGACGTGCAGATGACGTCGGATGGAGAGCCAGAAGGCATCTGAAAAATTTTGGAGTGATTTTGGAAATTACAAAAGCTTCTAGATGATTCTAGAAGCGTCTAGAAAACTTTAGACATTCTAGAAAAGTATAAAAAACTGTAGGAGGTTTCAGAAGGATTCTAGAAGATTCTGGAGGAGTTTTGAAAAGCTTAGAGAGTCTGAGAGTCATATAGAATTCTCCAAATTCTTCTAGAACCCTTTTGAAGTTTCTAGAACTGTGTGAATAATTTGAGAATGTCTCAGAAGCTTTCAAAAGCTTCTGAGAGCTCCTAGAATTTTCTGAATACTTCTAGAATTGCGTAGAATCCTCCAGAACCTTCTAGAATGTTCCAGAAGCCTTCTGAAGCTTTCAAAAACGTCTGGAATAGTCCTGAACCTTTCAGAACCCTTCTGAAGCTTTTAGATATTTTTTTTCAATTAAAAGAAAATTACGGTTTCAAAAACCAAATATTATCGCTTGCTGAAATTTCTCTAACTCAAAAAATAATTATTCCCAATTTTTTAAACTCGAAAACTCGACTCAGATTTTTCTAGACACTTCTAACACTTTCTTGTAGTAGCCTTCTGGAGCTTCTCGAGTTTCTAGAATCTTGAAGAGTCGTTAAGAATTTTTCGGGACCTTCCAGAATCATTCTGGAGCTAGAAGCTTCGAGAAACTTCTAGAAACTTCCATGTATCCATTTCATCAAATTTTTTTAGATGAAAATAATTTTTCAAAAAAAATTACGGTTTCAAGAAAAAAAAGTGTTTTTTTTCTCAAGTTTTTAATGTGTTGTTTTCATGAAGACTTTAGAAATTTCTGAAAGTTTCTAGAGTCGTCTAGAACCTTCTAGACCCTTCTGGAAAATTCTAGAACCTCT</canonical>
            <polymorphic>GGGTCTTCTGGGAAGAAGACGTGAGTATGAAGACGTTGGATGAATCGATGACGTCATCTGATGGAATTGGTTGGAAATTGAAGCTGACGCAGAAGTCGATAGACGTGCAGATGACGTCGGATGGAGAGCCAGAAGGCATCTGAAAAATTTTGGAGTGATTTTGGAAATTACAAAAGCTTCTAGATGATTCTAGAAGCGTCTAGAAAACTTTAGACATTCTAGAAAAGTATAAAAAACTGTAGGAGGTTTCAGAAGGATTCTAGAAGATTCTGGAGGAGTTTTGAAAAGCTTAGAGAGTCTGAGAGTCATATAGAATTCTCCAAATTCTTCTAGAACCCTTTTGAAGTTTCTAGAACTGTGTGAATAATTTGAGAATGTCTCAGAAGCTTTCAAAAGCTTCTGAGAGCTCCTAGAATTTTCTGAATACTTCTAGAATTGCGTAGAATCCTCCAGAACCTTCTAGAATGTTCCAGAAGCCTTCTGAAGCTTTCAAAAACGTSTGGAATAGTCCTGAACCTTTCAGAACCCTTCTGAAGCTTTTAGATATTTTTTTTCAATTAAAAGAAAATTACGGTTTCAAAAACCAAATATTATCGCTTGCTGAAATTTCTCTAACTCAAAAAATAATTATTCCCAATTTTTTAAACTCGAAAACTCGACTCAGATTTTTCTAGACACTTCTAACACTTTCTTGTAGTAGCCTTCTGGAGCTTCTCGAGTTTCTAGAATCTTGAAGAGTCGTTAAGAATTTTTCGGGACCTTCCAGAATCATTCTGGAGCTAGAAGCTTCGAGAAACTTCTAGAAACTTCCATGTATCCATTTCATCAAATTTTTTTAGATGAAAATAATTTTTCAAAAAAAATTACGGTTTCAAGAAAAAAAAGTGTTTTTTTTCTCAAGTTTTTAATGTGTTGTTTTCATGAAGACTTTAGAAATTTCTGAAAGTTTCTAGAGTCGTCTAGAACCTTCTAGACCCTTCTGGAAAATTCTAGAACCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>180 161 80 73 60 47 41 34 30 30 24 20 20 19 16 11 10 10 10 10 10 10 10 10 10 10 10 10 9 9 9 7</canonical_bands>
                <polymorphic_bands>180 161 80 73 60 47 41 40 34 30 24 20 20 19 16 11 10 10 10 10 10 10 10 10 10 10 10 9 9 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGATAGACGTGCAGAT</pcr_primer_p1>
		<pcr_primer_p2>CAACACATTAAAAACTTGAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>823</pcr_amplicon_size>
		<canonical_amplicon>AAGTCGATAGACGTGCAGATGACGTCGGATGGAGAGCCAGAAGGCATCTGAAAAATTTTGGAGTGATTTTGGAAATTACAAAAGCTTCTAGATGATTCTAGAAGCGTCTAGAAAACTTTAGACATTCTAGAAAAGTATAAAAAACTGTAGGAGGTTTCAGAAGGATTCTAGAAGATTCTGGAGGAGTTTTGAAAAGCTTAGAGAGTCTGAGAGTCATATAGAATTCTCCAAATTCTTCTAGAACCCTTTTGAAGTTTCTAGAACTGTGTGAATAATTTGAGAATGTCTCAGAAGCTTTCAAAAGCTTCTGAGAGCTCCTAGAATTTTCTGAATACTTCTAGAATTGCGTAGAATCCTCCAGAACCTTCTAGAATGTTCCAGAAGCCTTCTGAAGCTTTCAAAAACGTCTGGAATAGTCCTGAACCTTTCAGAACCCTTCTGAAGCTTTTAGATATTTTTTTTCAATTAAAAGAAAATTACGGTTTCAAAAACCAAATATTATCGCTTGCTGAAATTTCTCTAACTCAAAAAATAATTATTCCCAATTTTTTAAACTCGAAAACTCGACTCAGATTTTTCTAGACACTTCTAACACTTTCTTGTAGTAGCCTTCTGGAGCTTCTCGAGTTTCTAGAATCTTGAAGAGTCGTTAAGAATTTTTCGGGACCTTCCAGAATCATTCTGGAGCTAGAAGCTTCGAGAAACTTCTAGAAACTTCCATGTATCCATTTCATCAAATTTTTTTAGATGAAAATAATTTTTCAAAAAAAATTACGGTTTCAAGAAAAAAAAGTGTTTTTTTTCTCAAGTTTTTAATGTGTTG</canonical_amplicon>
		<polymorphic_amplicon>AAGTCGATAGACGTGCAGATGACGTCGGATGGAGAGCCAGAAGGCATCTGAAAAATTTTGGAGTGATTTTGGAAATTACAAAAGCTTCTAGATGATTCTAGAAGCGTCTAGAAAACTTTAGACATTCTAGAAAAGTATAAAAAACTGTAGGAGGTTTCAGAAGGATTCTAGAAGATTCTGGAGGAGTTTTGAAAAGCTTAGAGAGTCTGAGAGTCATATAGAATTCTCCAAATTCTTCTAGAACCCTTTTGAAGTTTCTAGAACTGTGTGAATAATTTGAGAATGTCTCAGAAGCTTTCAAAAGCTTCTGAGAGCTCCTAGAATTTTCTGAATACTTCTAGAATTGCGTAGAATCCTCCAGAACCTTCTAGAATGTTCCAGAAGCCTTCTGAAGCTTTCAAAAACGTSTGGAATAGTCCTGAACCTTTCAGAACCCTTCTGAAGCTTTTAGATATTTTTTTTCAATTAAAAGAAAATTACGGTTTCAAAAACCAAATATTATCGCTTGCTGAAATTTCTCTAACTCAAAAAATAATTATTCCCAATTTTTTAAACTCGAAAACTCGACTCAGATTTTTCTAGACACTTCTAACACTTTCTTGTAGTAGCCTTCTGGAGCTTCTCGAGTTTCTAGAATCTTGAAGAGTCGTTAAGAATTTTTCGGGACCTTCCAGAATCATTCTGGAGCTAGAAGCTTCGAGAAACTTCTAGAAACTTCCATGTATCCATTTCATCAAATTTTTTTAGATGAAAATAATTTTTCAAAAAAAATTACGGTTTCAAGAAAAAAAAGTGTTTTTTTTCTCAAGTTTTTAATGTGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31720</snp_id>
        <super_contig>c006601016.Contig2</super_contig>
        <contig_pos>29240</contig_pos>
        <strand></strand>
        <context>TACTTATTTT[T/A]AARCATTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GTCAATTTTAGCCTTGTTTTTGATGATTTTAAACTGTTTCTACTTATTTT</left_flank>
        <right_flank>AAGCATTTTCAATTAATTTCATCACAATTTTTCAAAAATTTTGAAACATC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTAAATCGCAAAATTGCTCAGCATAAAATTTCATATATTTTGCTGTTTCTAATTTTCCTATAGCTACCGTAGTTTTTGAGATATGCGTCTTGAAAAAATGCCTCACCTTGGATAATGTAAACTTTTGGTCATGAGTGCCGGAATTCGAGTCGGAGGTCTTCTGGGTGTCGAAATCGTCGATAGGAACATTCGATCACCCGAATTATTGATCGATGACGTCATCGATCCACGACCAGATGACGTTGATGGATTACGGTAGCTGGAAGTGGAAGCTCCGCCCATATCCGCACAAATACCCTCAGAATCCGTTGAATCGTTAAGTTTTCGCGTCATTTCTTCGGTTTTCTGGAAATTTGGATTGTCATTGATCCAGGAAATTAAACGTTTTCAAAATTTCCACTTTCTTTGAAACAGAAATTTTCTGGAATTTTCAAAATATTTATTTTTGTCAATTTTAGCCTTGTTTTTGATGATTTTAAACTGTTTCTACTTATTTTTAAGCATTTTCAATTAATTTCATCACAATTTTTCAAAAATTTTGAAACATCATTTTTATGGAAATGAGTAATACTAATTTTCAGTCATTTTCAGGCAATTTCAAGCTATTTTCGAAAAATACAGATAATTTTTGATGAATGGGATACCTCTTCAAAATCCTTTTTGAAAAAATTGTGAAACAACAATTTTATGGTAATTTTGATGTTTTTAGTTTTCAATAATTTTCGGATAATTTTGGCCTATTTTTCTCGGTTTTCCACCGAATTATTGTCTATTTTGAGCAATTTGTGTTCTGGAAACATTTTCAGATCAAATTTTTCGTCAATTTATAATAATTTTAGATTATTTCTGCAGCTAGAATTGATCAATTCCAAAGTTCATATAAGAGAAATTTGAAGAATTTTTTTCTCATTTCTGAAAATCGGAAATTCTCAAATTTTATGTACAAAAAGAACAGAGTTAATAGAAAAAACACTGGAAACCAATGAAAATTGATAAGA</canonical>
            <polymorphic>TTGTAAATCGCAAAATTGCTCAGCATAAAATTTCATATATTTTGCTGTTTCTAATTTTCCTATAGCTACCGTAGTTTTTGAGATATGCGTCTTGAAAAAATGCCTCACCTTGGATAATGTAAACTTTTGGTCATGAGTGCCGGAATTCGAGTCGGAGGTCTTCTGGGTGTCGAAATCGTCGATAGGAACATTCGATCACCCGAATTATTGATCGATGACGTCATCGATCCACGACCAGATGACGTTGATGGATTACGGTAGCTGGAAGTGGAAGCTCCGCCCATATCCGCACAAATACCCTCAGAATCCGTTGAATCGTTAAGTTTTCGCGTCATTTCTTCGGTTTTCTGGAAATTTGGATTGTCATTGATCCAGGAAATTAAACGTTTTCAAAATTTCCACTTTCTTTGAAACAGAAATTTTCTGGAATTTTCAAAATATTTATTTTTGTCAATTTTAGCCTTGTTTTTGATGATTTTAAACTGTTTCTACTTATTTTWAAGCATTTTCAATTAATTTCATCACAATTTTTCAAAAATTTTGAAACATCATTTTTATGGAAATGAGTAATACTAATTTTCAGTCATTTTCAGGCAATTTCAAGCTATTTTCGAAAAATACAGATAATTTTTGATGAATGGGATACCTCTTCAAAATCCTTTTTGAAAAAATTGTGAAACAACAATTTTATGGTAATTTTGATGTTTTTAGTTTTCAATAATTTTCGGATAATTTTGGCCTATTTTTCTCGGTTTTCCACCGAATTATTGTCTATTTTGAGCAATTTGTGTTCTGGAAACATTTTCAGATCAAATTTTTCGTCAATTTATAATAATTTTAGATTATTTCTGCAGCTAGAATTGATCAATTCCAAAGTTCATATAAGAGAAATTTGAAGAATTTTTTTCTCATTTCTGAAAATCGGAAATTCTCAAATTTTATGTACAAAAAGAACAGAGTTAATAGAAAAAACACTGGAAACCAATGAAAATTGATAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>447 319 98 61 40 21 14</canonical_bands>
                <polymorphic_bands>447 319 98 61 40 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCCACTTTCTTTGAAACAG</pcr_primer_p1>
		<pcr_primer_p2>GGTATCCCATTCATCAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ATTTCCACTTTCTTTGAAACAGAAATTTTCTGGAATTTTCAAAATATTTATTTTTGTCAATTTTAGCCTTGTTTTTGATGATTTTAAACTGTTTCTACTTATTTTTAAGCATTTTCAATTAATTTCATCACAATTTTTCAAAAATTTTGAAACATCATTTTTATGGAAATGAGTAATACTAATTTTCAGTCATTTTCAGGCAATTTCAAGCTATTTTCGAAAAATACAGATAATTTTTGATGAATGGGATACC</canonical_amplicon>
		<polymorphic_amplicon>ATTTCCACTTTCTTTGAAACAGAAATTTTCTGGAATTTTCAAAATATTTATTTTTGTCAATTTTAGCCTTGTTTTTGATGATTTTAAACTGTTTCTACTTATTTTWAAGCATTTTCAATTAATTTCATCACAATTTTTCAAAAATTTTGAAACATCATTTTTATGGAAATGAGTAATACTAATTTTCAGTCATTTTCAGGCAATTTCAAGCTATTTTCGAAAAATACAGATAATTTTTGATGAATGGGATACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31721</snp_id>
        <super_contig>c006601016.Contig2</super_contig>
        <contig_pos>29243</contig_pos>
        <strand></strand>
        <context>TTATTTTWAA[G/A]CATTTTCAWW</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATTTTAGCCTTGTTTTTGATGATTTTAAACTGTTTCTACTTATTTTTAA</left_flank>
        <right_flank>CATTTTCAATTAATTTCATCACAATTTTTCAAAAATTTTGAAACATCATT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATCGCAAAATTGCTCAGCATAAAATTTCATATATTTTGCTGTTTCTAATTTTCCTATAGCTACCGTAGTTTTTGAGATATGCGTCTTGAAAAAATGCCTCACCTTGGATAATGTAAACTTTTGGTCATGAGTGCCGGAATTCGAGTCGGAGGTCTTCTGGGTGTCGAAATCGTCGATAGGAACATTCGATCACCCGAATTATTGATCGATGACGTCATCGATCCACGACCAGATGACGTTGATGGATTACGGTAGCTGGAAGTGGAAGCTCCGCCCATATCCGCACAAATACCCTCAGAATCCGTTGAATCGTTAAGTTTTCGCGTCATTTCTTCGGTTTTCTGGAAATTTGGATTGTCATTGATCCAGGAAATTAAACGTTTTCAAAATTTCCACTTTCTTTGAAACAGAAATTTTCTGGAATTTTCAAAATATTTATTTTTGTCAATTTTAGCCTTGTTTTTGATGATTTTAAACTGTTTCTACTTATTTTTAAGCATTTTCAATTAATTTCATCACAATTTTTCAAAAATTTTGAAACATCATTTTTATGGAAATGAGTAATACTAATTTTCAGTCATTTTCAGGCAATTTCAAGCTATTTTCGAAAAATACAGATAATTTTTGATGAATGGGATACCTCTTCAAAATCCTTTTTGAAAAAATTGTGAAACAACAATTTTATGGTAATTTTGATGTTTTTAGTTTTCAATAATTTTCGGATAATTTTGGCCTATTTTTCTCGGTTTTCCACCGAATTATTGTCTATTTTGAGCAATTTGTGTTCTGGAAACATTTTCAGATCAAATTTTTCGTCAATTTATAATAATTTTAGATTATTTCTGCAGCTAGAATTGATCAATTCCAAAGTTCATATAAGAGAAATTTGAAGAATTTTTTTCTCATTTCTGAAAATCGGAAATTCTCAAATTTTATGTACAAAAAGAACAGAGTTAATAGAAAAAACACTGGAAACCAATGAAAATTGATAAGATGC</canonical>
            <polymorphic>TAAATCGCAAAATTGCTCAGCATAAAATTTCATATATTTTGCTGTTTCTAATTTTCCTATAGCTACCGTAGTTTTTGAGATATGCGTCTTGAAAAAATGCCTCACCTTGGATAATGTAAACTTTTGGTCATGAGTGCCGGAATTCGAGTCGGAGGTCTTCTGGGTGTCGAAATCGTCGATAGGAACATTCGATCACCCGAATTATTGATCGATGACGTCATCGATCCACGACCAGATGACGTTGATGGATTACGGTAGCTGGAAGTGGAAGCTCCGCCCATATCCGCACAAATACCCTCAGAATCCGTTGAATCGTTAAGTTTTCGCGTCATTTCTTCGGTTTTCTGGAAATTTGGATTGTCATTGATCCAGGAAATTAAACGTTTTCAAAATTTCCACTTTCTTTGAAACAGAAATTTTCTGGAATTTTCAAAATATTTATTTTTGTCAATTTTAGCCTTGTTTTTGATGATTTTAAACTGTTTCTACTTATTTTTAARCATTTTCAATTAATTTCATCACAATTTTTCAAAAATTTTGAAACATCATTTTTATGGAAATGAGTAATACTAATTTTCAGTCATTTTCAGGCAATTTCAAGCTATTTTCGAAAAATACAGATAATTTTTGATGAATGGGATACCTCTTCAAAATCCTTTTTGAAAAAATTGTGAAACAACAATTTTATGGTAATTTTGATGTTTTTAGTTTTCAATAATTTTCGGATAATTTTGGCCTATTTTTCTCGGTTTTCCACCGAATTATTGTCTATTTTGAGCAATTTGTGTTCTGGAAACATTTTCAGATCAAATTTTTCGTCAATTTATAATAATTTTAGATTATTTCTGCAGCTAGAATTGATCAATTCCAAAGTTCATATAAGAGAAATTTGAAGAATTTTTTTCTCATTTCTGAAAATCGGAAATTCTCAAATTTTATGTACAAAAAGAACAGAGTTAATAGAAAAAACACTGGAAACCAATGAAAATTGATAAGATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCCACTTTCTTTGAAACAG</pcr_primer_p1>
		<pcr_primer_p2>GGTATCCCATTCATCAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ATTTCCACTTTCTTTGAAACAGAAATTTTCTGGAATTTTCAAAATATTTATTTTTGTCAATTTTAGCCTTGTTTTTGATGATTTTAAACTGTTTCTACTTATTTTTAAGCATTTTCAATTAATTTCATCACAATTTTTCAAAAATTTTGAAACATCATTTTTATGGAAATGAGTAATACTAATTTTCAGTCATTTTCAGGCAATTTCAAGCTATTTTCGAAAAATACAGATAATTTTTGATGAATGGGATACC</canonical_amplicon>
		<polymorphic_amplicon>ATTTCCACTTTCTTTGAAACAGAAATTTTCTGGAATTTTCAAAATATTTATTTTTGTCAATTTTAGCCTTGTTTTTGATGATTTTAAACTGTTTCTACTTATTTTTAARCATTTTCAATTAATTTCATCACAATTTTTCAAAAATTTTGAAACATCATTTTTATGGAAATGAGTAATACTAATTTTCAGTCATTTTCAGGCAATTTCAAGCTATTTTCGAAAAATACAGATAATTTTTGATGAATGGGATACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31722</snp_id>
        <super_contig>c006601016.Contig2</super_contig>
        <contig_pos>29252</contig_pos>
        <strand></strand>
        <context>ARCATTTTCA[A/T]WTAATTTCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTGTTTTTGATGATTTTAAACTGTTTCTACTTATTTTTAAGCATTTTCA</left_flank>
        <right_flank>TTAATTTCATCACAATTTTTCAAAAATTTTGAAACATCATTTTTATGGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTGCTCAGCATAAAATTTCATATATTTTGCTGTTTCTAATTTTCCTATAGCTACCGTAGTTTTTGAGATATGCGTCTTGAAAAAATGCCTCACCTTGGATAATGTAAACTTTTGGTCATGAGTGCCGGAATTCGAGTCGGAGGTCTTCTGGGTGTCGAAATCGTCGATAGGAACATTCGATCACCCGAATTATTGATCGATGACGTCATCGATCCACGACCAGATGACGTTGATGGATTACGGTAGCTGGAAGTGGAAGCTCCGCCCATATCCGCACAAATACCCTCAGAATCCGTTGAATCGTTAAGTTTTCGCGTCATTTCTTCGGTTTTCTGGAAATTTGGATTGTCATTGATCCAGGAAATTAAACGTTTTCAAAATTTCCACTTTCTTTGAAACAGAAATTTTCTGGAATTTTCAAAATATTTATTTTTGTCAATTTTAGCCTTGTTTTTGATGATTTTAAACTGTTTCTACTTATTTTTAAGCATTTTCAATTAATTTCATCACAATTTTTCAAAAATTTTGAAACATCATTTTTATGGAAATGAGTAATACTAATTTTCAGTCATTTTCAGGCAATTTCAAGCTATTTTCGAAAAATACAGATAATTTTTGATGAATGGGATACCTCTTCAAAATCCTTTTTGAAAAAATTGTGAAACAACAATTTTATGGTAATTTTGATGTTTTTAGTTTTCAATAATTTTCGGATAATTTTGGCCTATTTTTCTCGGTTTTCCACCGAATTATTGTCTATTTTGAGCAATTTGTGTTCTGGAAACATTTTCAGATCAAATTTTTCGTCAATTTATAATAATTTTAGATTATTTCTGCAGCTAGAATTGATCAATTCCAAAGTTCATATAAGAGAAATTTGAAGAATTTTTTTCTCATTTCTGAAAATCGGAAATTCTCAAATTTTATGTACAAAAAGAACAGAGTTAATAGAAAAAACACTGGAAACCAATGAAAATTGATAAGATGCATTTCCATA</canonical>
            <polymorphic>AAATTGCTCAGCATAAAATTTCATATATTTTGCTGTTTCTAATTTTCCTATAGCTACCGTAGTTTTTGAGATATGCGTCTTGAAAAAATGCCTCACCTTGGATAATGTAAACTTTTGGTCATGAGTGCCGGAATTCGAGTCGGAGGTCTTCTGGGTGTCGAAATCGTCGATAGGAACATTCGATCACCCGAATTATTGATCGATGACGTCATCGATCCACGACCAGATGACGTTGATGGATTACGGTAGCTGGAAGTGGAAGCTCCGCCCATATCCGCACAAATACCCTCAGAATCCGTTGAATCGTTAAGTTTTCGCGTCATTTCTTCGGTTTTCTGGAAATTTGGATTGTCATTGATCCAGGAAATTAAACGTTTTCAAAATTTCCACTTTCTTTGAAACAGAAATTTTCTGGAATTTTCAAAATATTTATTTTTGTCAATTTTAGCCTTGTTTTTGATGATTTTAAACTGTTTCTACTTATTTTTAAGCATTTTCAWTTAATTTCATCACAATTTTTCAAAAATTTTGAAACATCATTTTTATGGAAATGAGTAATACTAATTTTCAGTCATTTTCAGGCAATTTCAAGCTATTTTCGAAAAATACAGATAATTTTTGATGAATGGGATACCTCTTCAAAATCCTTTTTGAAAAAATTGTGAAACAACAATTTTATGGTAATTTTGATGTTTTTAGTTTTCAATAATTTTCGGATAATTTTGGCCTATTTTTCTCGGTTTTCCACCGAATTATTGTCTATTTTGAGCAATTTGTGTTCTGGAAACATTTTCAGATCAAATTTTTCGTCAATTTATAATAATTTTAGATTATTTCTGCAGCTAGAATTGATCAATTCCAAAGTTCATATAAGAGAAATTTGAAGAATTTTTTTCTCATTTCTGAAAATCGGAAATTCTCAAATTTTATGTACAAAAAGAACAGAGTTAATAGAAAAAACACTGGAAACCAATGAAAATTGATAAGATGCATTTCCATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>150 91 59 58 55 44 38 32 30 30 28 25 25 25 25 24 24 23 23 21 20 16 15 14 11 11 11 11 11 10 10 9 8 8 4 1</canonical_bands>
                <polymorphic_bands>150 91 62 59 55 44 38 32 30 30 28 25 25 25 25 24 24 23 23 21 20 16 15 14 11 11 11 11 11 10 10 9 8 8 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCCACTTTCTTTGAAACAG</pcr_primer_p1>
		<pcr_primer_p2>GGTATCCCATTCATCAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ATTTCCACTTTCTTTGAAACAGAAATTTTCTGGAATTTTCAAAATATTTATTTTTGTCAATTTTAGCCTTGTTTTTGATGATTTTAAACTGTTTCTACTTATTTTTAAGCATTTTCAATTAATTTCATCACAATTTTTCAAAAATTTTGAAACATCATTTTTATGGAAATGAGTAATACTAATTTTCAGTCATTTTCAGGCAATTTCAAGCTATTTTCGAAAAATACAGATAATTTTTGATGAATGGGATACC</canonical_amplicon>
		<polymorphic_amplicon>ATTTCCACTTTCTTTGAAACAGAAATTTTCTGGAATTTTCAAAATATTTATTTTTGTCAATTTTAGCCTTGTTTTTGATGATTTTAAACTGTTTCTACTTATTTTTAAGCATTTTCAWTTAATTTCATCACAATTTTTCAAAAATTTTGAAACATCATTTTTATGGAAATGAGTAATACTAATTTTCAGTCATTTTCAGGCAATTTCAAGCTATTTTCGAAAAATACAGATAATTTTTGATGAATGGGATACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31723</snp_id>
        <super_contig>c006601016.Contig2</super_contig>
        <contig_pos>29253</contig_pos>
        <strand></strand>
        <context>RCATTTTCAW[T/A]TAATTTCATC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTGTTTTTGATGATTTTAAACTGTTTCTACTTATTTTTAAGCATTTTCAA</left_flank>
        <right_flank>TAATTTCATCACAATTTTTCAAAAATTTTGAAACATCATTTTTATGGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGCTCAGCATAAAATTTCATATATTTTGCTGTTTCTAATTTTCCTATAGCTACCGTAGTTTTTGAGATATGCGTCTTGAAAAAATGCCTCACCTTGGATAATGTAAACTTTTGGTCATGAGTGCCGGAATTCGAGTCGGAGGTCTTCTGGGTGTCGAAATCGTCGATAGGAACATTCGATCACCCGAATTATTGATCGATGACGTCATCGATCCACGACCAGATGACGTTGATGGATTACGGTAGCTGGAAGTGGAAGCTCCGCCCATATCCGCACAAATACCCTCAGAATCCGTTGAATCGTTAAGTTTTCGCGTCATTTCTTCGGTTTTCTGGAAATTTGGATTGTCATTGATCCAGGAAATTAAACGTTTTCAAAATTTCCACTTTCTTTGAAACAGAAATTTTCTGGAATTTTCAAAATATTTATTTTTGTCAATTTTAGCCTTGTTTTTGATGATTTTAAACTGTTTCTACTTATTTTTAAGCATTTTCAATTAATTTCATCACAATTTTTCAAAAATTTTGAAACATCATTTTTATGGAAATGAGTAATACTAATTTTCAGTCATTTTCAGGCAATTTCAAGCTATTTTCGAAAAATACAGATAATTTTTGATGAATGGGATACCTCTTCAAAATCCTTTTTGAAAAAATTGTGAAACAACAATTTTATGGTAATTTTGATGTTTTTAGTTTTCAATAATTTTCGGATAATTTTGGCCTATTTTTCTCGGTTTTCCACCGAATTATTGTCTATTTTGAGCAATTTGTGTTCTGGAAACATTTTCAGATCAAATTTTTCGTCAATTTATAATAATTTTAGATTATTTCTGCAGCTAGAATTGATCAATTCCAAAGTTCATATAAGAGAAATTTGAAGAATTTTTTTCTCATTTCTGAAAATCGGAAATTCTCAAATTTTATGTACAAAAAGAACAGAGTTAATAGAAAAAACACTGGAAACCAATGAAAATTGATAAGATGCATTTCCATAA</canonical>
            <polymorphic>AATTGCTCAGCATAAAATTTCATATATTTTGCTGTTTCTAATTTTCCTATAGCTACCGTAGTTTTTGAGATATGCGTCTTGAAAAAATGCCTCACCTTGGATAATGTAAACTTTTGGTCATGAGTGCCGGAATTCGAGTCGGAGGTCTTCTGGGTGTCGAAATCGTCGATAGGAACATTCGATCACCCGAATTATTGATCGATGACGTCATCGATCCACGACCAGATGACGTTGATGGATTACGGTAGCTGGAAGTGGAAGCTCCGCCCATATCCGCACAAATACCCTCAGAATCCGTTGAATCGTTAAGTTTTCGCGTCATTTCTTCGGTTTTCTGGAAATTTGGATTGTCATTGATCCAGGAAATTAAACGTTTTCAAAATTTCCACTTTCTTTGAAACAGAAATTTTCTGGAATTTTCAAAATATTTATTTTTGTCAATTTTAGCCTTGTTTTTGATGATTTTAAACTGTTTCTACTTATTTTTAAGCATTTTCAAWTAATTTCATCACAATTTTTCAAAAATTTTGAAACATCATTTTTATGGAAATGAGTAATACTAATTTTCAGTCATTTTCAGGCAATTTCAAGCTATTTTCGAAAAATACAGATAATTTTTGATGAATGGGATACCTCTTCAAAATCCTTTTTGAAAAAATTGTGAAACAACAATTTTATGGTAATTTTGATGTTTTTAGTTTTCAATAATTTTCGGATAATTTTGGCCTATTTTTCTCGGTTTTCCACCGAATTATTGTCTATTTTGAGCAATTTGTGTTCTGGAAACATTTTCAGATCAAATTTTTCGTCAATTTATAATAATTTTAGATTATTTCTGCAGCTAGAATTGATCAATTCCAAAGTTCATATAAGAGAAATTTGAAGAATTTTTTTCTCATTTCTGAAAATCGGAAATTCTCAAATTTTATGTACAAAAAGAACAGAGTTAATAGAAAAAACACTGGAAACCAATGAAAATTGATAAGATGCATTTCCATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>447 306 98 61 53 21 14</canonical_bands>
                <polymorphic_bands>461 306 98 61 53 21</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>150 91 59 58 55 44 38 32 30 30 28 25 25 25 25 24 24 24 23 21 20 16 15 14 11 11 11 11 11 10 10 9 8 8 4 0</canonical_bands>
                <polymorphic_bands>150 91 62 59 55 44 38 32 30 30 28 25 25 25 25 24 24 24 23 21 20 16 15 14 11 11 11 11 11 10 10 9 8 8 0</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCCACTTTCTTTGAAACAG</pcr_primer_p1>
		<pcr_primer_p2>GGTATCCCATTCATCAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ATTTCCACTTTCTTTGAAACAGAAATTTTCTGGAATTTTCAAAATATTTATTTTTGTCAATTTTAGCCTTGTTTTTGATGATTTTAAACTGTTTCTACTTATTTTTAAGCATTTTCAATTAATTTCATCACAATTTTTCAAAAATTTTGAAACATCATTTTTATGGAAATGAGTAATACTAATTTTCAGTCATTTTCAGGCAATTTCAAGCTATTTTCGAAAAATACAGATAATTTTTGATGAATGGGATACC</canonical_amplicon>
		<polymorphic_amplicon>ATTTCCACTTTCTTTGAAACAGAAATTTTCTGGAATTTTCAAAATATTTATTTTTGTCAATTTTAGCCTTGTTTTTGATGATTTTAAACTGTTTCTACTTATTTTTAAGCATTTTCAAWTAATTTCATCACAATTTTTCAAAAATTTTGAAACATCATTTTTATGGAAATGAGTAATACTAATTTTCAGTCATTTTCAGGCAATTTCAAGCTATTTTCGAAAAATACAGATAATTTTTGATGAATGGGATACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31724</snp_id>
        <super_contig>c006601016.Contig2</super_contig>
        <contig_pos>29366</contig_pos>
        <strand></strand>
        <context>AAATACAGAT[A/T]ATTTTTGATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTCAGTCATTTTCAGGCAATTTCAAGCTATTTTCGAAAAATACAGAT</left_flank>
        <right_flank>ATTTTTGATGAATGGGATACCTCTTCAAAATCCTTTTTGAAAAAATTGTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGTCATGAGTGCCGGAATTCGAGTCGGAGGTCTTCTGGGTGTCGAAATCGTCGATAGGAACATTCGATCACCCGAATTATTGATCGATGACGTCATCGATCCACGACCAGATGACGTTGATGGATTACGGTAGCTGGAAGTGGAAGCTCCGCCCATATCCGCACAAATACCCTCAGAATCCGTTGAATCGTTAAGTTTTCGCGTCATTTCTTCGGTTTTCTGGAAATTTGGATTGTCATTGATCCAGGAAATTAAACGTTTTCAAAATTTCCACTTTCTTTGAAACAGAAATTTTCTGGAATTTTCAAAATATTTATTTTTGTCAATTTTAGCCTTGTTTTTGATGATTTTAAACTGTTTCTACTTATTTTTAAGCATTTTCAATTAATTTCATCACAATTTTTCAAAAATTTTGAAACATCATTTTTATGGAAATGAGTAATACTAATTTTCAGTCATTTTCAGGCAATTTCAAGCTATTTTCGAAAAATACAGATAATTTTTGATGAATGGGATACCTCTTCAAAATCCTTTTTGAAAAAATTGTGAAACAACAATTTTATGGTAATTTTGATGTTTTTAGTTTTCAATAATTTTCGGATAATTTTGGCCTATTTTTCTCGGTTTTCCACCGAATTATTGTCTATTTTGAGCAATTTGTGTTCTGGAAACATTTTCAGATCAAATTTTTCGTCAATTTATAATAATTTTAGATTATTTCTGCAGCTAGAATTGATCAATTCCAAAGTTCATATAAGAGAAATTTGAAGAATTTTTTTCTCATTTCTGAAAATCGGAAATTCTCAAATTTTATGTACAAAAAGAACAGAGTTAATAGAAAAAACACTGGAAACCAATGAAAATTGATAAGATGCATTTCCATAAAGTTACTGTTTCGAAAAATTTCAAAAAATTTTGAAAAAGTTGAATTTGGAAATACAAAACTACATTGAAAACTAGGCGAAAATGCCCGAAAATCGTTCGAAAATTACTAAAAA</canonical>
            <polymorphic>TTGGTCATGAGTGCCGGAATTCGAGTCGGAGGTCTTCTGGGTGTCGAAATCGTCGATAGGAACATTCGATCACCCGAATTATTGATCGATGACGTCATCGATCCACGACCAGATGACGTTGATGGATTACGGTAGCTGGAAGTGGAAGCTCCGCCCATATCCGCACAAATACCCTCAGAATCCGTTGAATCGTTAAGTTTTCGCGTCATTTCTTCGGTTTTCTGGAAATTTGGATTGTCATTGATCCAGGAAATTAAACGTTTTCAAAATTTCCACTTTCTTTGAAACAGAAATTTTCTGGAATTTTCAAAATATTTATTTTTGTCAATTTTAGCCTTGTTTTTGATGATTTTAAACTGTTTCTACTTATTTTTAAGCATTTTCAATTAATTTCATCACAATTTTTCAAAAATTTTGAAACATCATTTTTATGGAAATGAGTAATACTAATTTTCAGTCATTTTCAGGCAATTTCAAGCTATTTTCGAAAAATACAGATWATTTTTGATGAATGGGATACCTCTTCAAAATCCTTTTTGAAAAAATTGTGAAACAACAATTTTATGGTAATTTTGATGTTTTTAGTTTTCAATAATTTTCGGATAATTTTGGCCTATTTTTCTCGGTTTTCCACCGAATTATTGTCTATTTTGAGCAATTTGTGTTCTGGAAACATTTTCAGATCAAATTTTTCGTCAATTTATAATAATTTTAGATTATTTCTGCAGCTAGAATTGATCAATTCCAAAGTTCATATAAGAGAAATTTGAAGAATTTTTTTCTCATTTCTGAAAATCGGAAATTCTCAAATTTTATGTACAAAAAGAACAGAGTTAATAGAAAAAACACTGGAAACCAATGAAAATTGATAAGATGCATTTCCATAAAGTTACTGTTTCGAAAAATTTCAAAAAATTTTGAAAAAGTTGAATTTGGAAATACAAAACTACATTGAAAACTAGGCGAAAATGCCCGAAAATCGTTCGAAAATTACTAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>150 59 59 58 55 44 40 38 32 30 30 28 25 25 25 25 24 23 21 20 17 16 16 14 12 11 11 11 11 11 10 10 10 9 8 8 4</canonical_bands>
                <polymorphic_bands>150 74 59 59 58 55 40 38 32 30 28 25 25 25 25 24 23 21 20 17 16 16 14 12 11 11 11 11 11 10 10 10 9 8 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGAAACATCATTTTTATGG</pcr_primer_p1>
		<pcr_primer_p2>AATTGCTCAAAATAGACAATAATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGAAACATCATTTTTATGGAAATGAGTAATACTAATTTTCAGTCATTTTCAGGCAATTTCAAGCTATTTTCGAAAAATACAGATAATTTTTGATGAATGGGATACCTCTTCAAAATCCTTTTTGAAAAAATTGTGAAACAACAATTTTATGGTAATTTTGATGTTTTTAGTTTTCAATAATTTTCGGATAATTTTGGCCTATTTTTCTCGGTTTTCCACCGAATTATTGTCTATTTTGAGCAATT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGAAACATCATTTTTATGGAAATGAGTAATACTAATTTTCAGTCATTTTCAGGCAATTTCAAGCTATTTTCGAAAAATACAGATWATTTTTGATGAATGGGATACCTCTTCAAAATCCTTTTTGAAAAAATTGTGAAACAACAATTTTATGGTAATTTTGATGTTTTTAGTTTTCAATAATTTTCGGATAATTTTGGCCTATTTTTCTCGGTTTTCCACCGAATTATTGTCTATTTTGAGCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31725</snp_id>
        <super_contig>c006601016.Contig2</super_contig>
        <contig_pos>29422</contig_pos>
        <strand></strand>
        <context>TTGTGAAACA[A/G]CAATTTTATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATGAATGGGATACCTCTTCAAAATCCTTTTTGAAAAAATTGTGAAACA</left_flank>
        <right_flank>CAATTTTATGGTAATTTTGATGTTTTTAGTTTTCAATAATTTTCGGATAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGAACATTCGATCACCCGAATTATTGATCGATGACGTCATCGATCCACGACCAGATGACGTTGATGGATTACGGTAGCTGGAAGTGGAAGCTCCGCCCATATCCGCACAAATACCCTCAGAATCCGTTGAATCGTTAAGTTTTCGCGTCATTTCTTCGGTTTTCTGGAAATTTGGATTGTCATTGATCCAGGAAATTAAACGTTTTCAAAATTTCCACTTTCTTTGAAACAGAAATTTTCTGGAATTTTCAAAATATTTATTTTTGTCAATTTTAGCCTTGTTTTTGATGATTTTAAACTGTTTCTACTTATTTTTAAGCATTTTCAATTAATTTCATCACAATTTTTCAAAAATTTTGAAACATCATTTTTATGGAAATGAGTAATACTAATTTTCAGTCATTTTCAGGCAATTTCAAGCTATTTTCGAAAAATACAGATAATTTTTGATGAATGGGATACCTCTTCAAAATCCTTTTTGAAAAAATTGTGAAACAACAATTTTATGGTAATTTTGATGTTTTTAGTTTTCAATAATTTTCGGATAATTTTGGCCTATTTTTCTCGGTTTTCCACCGAATTATTGTCTATTTTGAGCAATTTGTGTTCTGGAAACATTTTCAGATCAAATTTTTCGTCAATTTATAATAATTTTAGATTATTTCTGCAGCTAGAATTGATCAATTCCAAAGTTCATATAAGAGAAATTTGAAGAATTTTTTTCTCATTTCTGAAAATCGGAAATTCTCAAATTTTATGTACAAAAAGAACAGAGTTAATAGAAAAAACACTGGAAACCAATGAAAATTGATAAGATGCATTTCCATAAAGTTACTGTTTCGAAAAATTTCAAAAAATTTTGAAAAAGTTGAATTTGGAAATACAAAACTACATTGAAAACTAGGCGAAAATGCCCGAAAATCGTTCGAAAATTACTAAAAACAACAAAAAAACAAGCTAAATTTGACTAAAATTATGAGATATGAACTTTGAAAACT</canonical>
            <polymorphic>TAGGAACATTCGATCACCCGAATTATTGATCGATGACGTCATCGATCCACGACCAGATGACGTTGATGGATTACGGTAGCTGGAAGTGGAAGCTCCGCCCATATCCGCACAAATACCCTCAGAATCCGTTGAATCGTTAAGTTTTCGCGTCATTTCTTCGGTTTTCTGGAAATTTGGATTGTCATTGATCCAGGAAATTAAACGTTTTCAAAATTTCCACTTTCTTTGAAACAGAAATTTTCTGGAATTTTCAAAATATTTATTTTTGTCAATTTTAGCCTTGTTTTTGATGATTTTAAACTGTTTCTACTTATTTTTAAGCATTTTCAATTAATTTCATCACAATTTTTCAAAAATTTTGAAACATCATTTTTATGGAAATGAGTAATACTAATTTTCAGTCATTTTCAGGCAATTTCAAGCTATTTTCGAAAAATACAGATAATTTTTGATGAATGGGATACCTCTTCAAAATCCTTTTTGAAAAAATTGTGAAACARCAATTTTATGGTAATTTTGATGTTTTTAGTTTTCAATAATTTTCGGATAATTTTGGCCTATTTTTCTCGGTTTTCCACCGAATTATTGTCTATTTTGAGCAATTTGTGTTCTGGAAACATTTTCAGATCAAATTTTTCGTCAATTTATAATAATTTTAGATTATTTCTGCAGCTAGAATTGATCAATTCCAAAGTTCATATAAGAGAAATTTGAAGAATTTTTTTCTCATTTCTGAAAATCGGAAATTCTCAAATTTTATGTACAAAAAGAACAGAGTTAATAGAAAAAACACTGGAAACCAATGAAAATTGATAAGATGCATTTCCATAAAGTTACTGTTTCGAAAAATTTCAAAAAATTTTGAAAAAGTTGAATTTGGAAATACAAAACTACATTGAAAACTAGGCGAAAATGCCCGAAAATCGTTCGAAAATTACTAAAAACAACAAAAAAACAAGCTAAATTTGACTAAAATTATGAGATATGAACTTTGAAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGAAACATCATTTTTATGG</pcr_primer_p1>
		<pcr_primer_p2>AATTGCTCAAAATAGACAATAATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGAAACATCATTTTTATGGAAATGAGTAATACTAATTTTCAGTCATTTTCAGGCAATTTCAAGCTATTTTCGAAAAATACAGATAATTTTTGATGAATGGGATACCTCTTCAAAATCCTTTTTGAAAAAATTGTGAAACAACAATTTTATGGTAATTTTGATGTTTTTAGTTTTCAATAATTTTCGGATAATTTTGGCCTATTTTTCTCGGTTTTCCACCGAATTATTGTCTATTTTGAGCAATT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGAAACATCATTTTTATGGAAATGAGTAATACTAATTTTCAGTCATTTTCAGGCAATTTCAAGCTATTTTCGAAAAATACAGATAATTTTTGATGAATGGGATACCTCTTCAAAATCCTTTTTGAAAAAATTGTGAAACARCAATTTTATGGTAATTTTGATGTTTTTAGTTTTCAATAATTTTCGGATAATTTTGGCCTATTTTTCTCGGTTTTCCACCGAATTATTGTCTATTTTGAGCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31726</snp_id>
        <super_contig>c006601016.Contig2</super_contig>
        <contig_pos>39799</contig_pos>
        <strand>+</strand>
        <context>AATCACGATT[A/T]TCATCGATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTAATAGTAAAGATTTTTGAAACAGTAATTTTTCCTAAAAATCACGATT</left_flank>
        <right_flank>TCATCGATTTTGCAGGCCAACTTTTTTTGTGAGTTTCTCAAATTTTCAGA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAAAATGTTTATCAGAATNNNNNNNNNNTATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATATTAACGCTTCTGGTAGGGGCCAAATTTTTCAAAAAGTGTGAAACAGTGAAAAAACTACTGTTTCAAAATTTTTGCAAATTGTAAACGTTCCAAATTCGCTCCATTGAGAAAATTGGATATTTCCTAGAAACACATTTTAAATAAAACCGGTTAAAAATTGATAAAAATGATGAAAAAACATGATAACATTGAAAAAAAAAGTTGCAGTTTCAAAATTTTTCAAAAATATCAATTTCATCGAATTTCGTATTGTAACCAAAAGGCTAAAAAAAATTCTGGAATTTCCAAAAATTTTGCCAAAAACATCAATAAACAATCGCTGTTTCAAATTTTTATAAAATTGTTAATAGTAAAGATTTTTGAAACAGTAATTTTTCCTAAAAATCACGATTTTCATCGATTTTGCAGGCCAACTTTTTTTGTGAGTTTCTCAAATTTTCAGATCAAACTGATTGTATTTTGGTAAGACTATGAGGTTAATCAAATATAAACGTATGAAGAGTTTTGAAAAAAAAAATTGAAACAGCAATATTTTTTATTTTTACAAGTTTCAAGTTATCAGAATTTTCAGACTTTTAAGCGCACTTACATATGTCTAAAATAGCAATTTTAGTTAAATTGAGATTTTCAAATTATTTCGAAAAGTTTCAAAAAAAATGAAACGGCAATTCTTCAAATTTTCGACTTTCTGGGCGAAAACATGAAGTTTTGTCAAATTGATTATTTTTTCTGTGAAATAAAAAGATCATTGTAAATAAAATTATTGGAAAATTCCAAAAAAAAAATTGAAATTCAGAAATTCAGAAATTCAGAAATGTCTAAAAATAATCTACAAAAATTGACATGATTGGGAAGTTTTTGAATTCAAAGATTTATTTTTTAAAAATCGATTT</canonical>
            <polymorphic>GTAAAATGTTTATCAGAATNNNNNNNNNNTATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATATTAACGCTTCTGGTAGGGGCCAAATTTTTCAAAAAGTGTGAAACAGTGAAAAAACTACTGTTTCAAAATTTTTGCAAATTGTAAACGTTCCAAATTCGCTCCATTGAGAAAATTGGATATTTCCTAGAAACACATTTTAAATAAAACCGGTTAAAAATTGATAAAAATGATGAAAAAACATGATAACATTGAAAAAAAAAGTTGCAGTTTCAAAATTTTTCAAAAATATCAATTTCATCGAATTTCGTATTGTAACCAAAAGGCTAAAAAAAATTCTGGAATTTCCAAAAATTTTGCCAAAAACATCAATAAACAATCGCTGTTTCAAATTTTTATAAAATTGTTAATAGTAAAGATTTTTGAAACAGTAATTTTTCCTAAAAATCACGATTWTCATCGATTTTGCAGGCCAACTTTTTTTGTGAGTTTCTCAAATTTTCAGATCAAACTGATTGTATTTTGGTAAGACTATGAGGTTAATCAAATATAAACGTATGAAGAGTTTTGAAAAAAAAAATTGAAACAGCAATATTTTTTATTTTTACAAGTTTCAAGTTATCAGAATTTTCAGACTTTTAAGCGCACTTACATATGTCTAAAATAGCAATTTTAGTTAAATTGAGATTTTCAAATTATTTCGAAAAGTTTCAAAAAAAATGAAACGGCAATTCTTCAAATTTTCGACTTTCTGGGCGAAAACATGAAGTTTTGTCAAATTGATTATTTTTTCTGTGAAATAAAAAGATCATTGTAAATAAAATTATTGGAAAATTCCAAAAAAAAAATTGAAATTCAGAAATTCAGAAATTCAGAAATGTCTAAAAATAATCTACAAAAATTGACATGATTGGGAAGTTTTTGAATTCAAAGATTTATTTTTTAAAAATCGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCATCGAATTTCGTATTGTAAC</pcr_primer_p1>
		<pcr_primer_p2>TTGATTAACCTCATAGTCTTACCA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCATCGAATTTCGTATTGTAACCAAAAGGCTAAAAAAAATTCTGGAATTTCCAAAAATTTTGCCAAAAACATCAATAAACAATCGCTGTTTCAAATTTTTATAAAATTGTTAATAGTAAAGATTTTTGAAACAGTAATTTTTCCTAAAAATCACGATTTTCATCGATTTTGCAGGCCAACTTTTTTTGTGAGTTTCTCAAATTTTCAGATCAAACTGATTGTATTTTGGTAAGACTATGAGGTTAATCAA</canonical_amplicon>
		<polymorphic_amplicon>TTCATCGAATTTCGTATTGTAACCAAAAGGCTAAAAAAAATTCTGGAATTTCCAAAAATTTTGCCAAAAACATCAATAAACAATCGCTGTTTCAAATTTTTATAAAATTGTTAATAGTAAAGATTTTTGAAACAGTAATTTTTCCTAAAAATCACGATTWTCATCGATTTTGCAGGCCAACTTTTTTTGTGAGTTTCTCAAATTTTCAGATCAAACTGATTGTATTTTGGTAAGACTATGAGGTTAATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31727</snp_id>
        <super_contig>c006601016.Contig2</super_contig>
        <contig_pos>39995</contig_pos>
        <strand>+</strand>
        <context>AGCGCACTTA[C/T]ATATGTCTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTACAAGTTTCAAGTTATCAGAATTTTCAGACTTTTAAGCGCACTTA</left_flank>
        <right_flank>ATATGTCTAAAATAGCAATTTTAGTTAAATTGAGATTTTCAAATTATTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAATTCGCTCCATTGAGAAAATTGGATATTTCCTAGAAACACATTTTAAATAAAACCGGTTAAAAATTGATAAAAATGATGAAAAAACATGATAACATTGAAAAAAAAAGTTGCAGTTTCAAAATTTTTCAAAAATATCAATTTCATCGAATTTCGTATTGTAACCAAAAGGCTAAAAAAAATTCTGGAATTTCCAAAAATTTTGCCAAAAACATCAATAAACAATCGCTGTTTCAAATTTTTATAAAATTGTTAATAGTAAAGATTTTTGAAACAGTAATTTTTCCTAAAAATCACGATTTTCATCGATTTTGCAGGCCAACTTTTTTTGTGAGTTTCTCAAATTTTCAGATCAAACTGATTGTATTTTGGTAAGACTATGAGGTTAATCAAATATAAACGTATGAAGAGTTTTGAAAAAAAAAATTGAAACAGCAATATTTTTTATTTTTACAAGTTTCAAGTTATCAGAATTTTCAGACTTTTAAGCGCACTTACATATGTCTAAAATAGCAATTTTAGTTAAATTGAGATTTTCAAATTATTTCGAAAAGTTTCAAAAAAAATGAAACGGCAATTCTTCAAATTTTCGACTTTCTGGGCGAAAACATGAAGTTTTGTCAAATTGATTATTTTTTCTGTGAAATAAAAAGATCATTGTAAATAAAATTATTGGAAAATTCCAAAAAAAAAATTGAAATTCAGAAATTCAGAAATTCAGAAATGTCTAAAAATAATCTACAAAAATTGACATGATTGGGAAGTTTTTGAATTCAAAGATTTATTTTTTAAAAATCGATTTTTCCATCTTTCGGGGGCAATAGAATTTCTGGATTTCTGAACTTCTGAACTTCTGAAATTTTTAAAAATCGGAATATCTAGCTTATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATCCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGNNNNNNNNNNGCTGCTCTCGAGTTCGTGATTCCAA</canonical>
            <polymorphic>CCAAATTCGCTCCATTGAGAAAATTGGATATTTCCTAGAAACACATTTTAAATAAAACCGGTTAAAAATTGATAAAAATGATGAAAAAACATGATAACATTGAAAAAAAAAGTTGCAGTTTCAAAATTTTTCAAAAATATCAATTTCATCGAATTTCGTATTGTAACCAAAAGGCTAAAAAAAATTCTGGAATTTCCAAAAATTTTGCCAAAAACATCAATAAACAATCGCTGTTTCAAATTTTTATAAAATTGTTAATAGTAAAGATTTTTGAAACAGTAATTTTTCCTAAAAATCACGATTTTCATCGATTTTGCAGGCCAACTTTTTTTGTGAGTTTCTCAAATTTTCAGATCAAACTGATTGTATTTTGGTAAGACTATGAGGTTAATCAAATATAAACGTATGAAGAGTTTTGAAAAAAAAAATTGAAACAGCAATATTTTTTATTTTTACAAGTTTCAAGTTATCAGAATTTTCAGACTTTTAAGCGCACTTAYATATGTCTAAAATAGCAATTTTAGTTAAATTGAGATTTTCAAATTATTTCGAAAAGTTTCAAAAAAAATGAAACGGCAATTCTTCAAATTTTCGACTTTCTGGGCGAAAACATGAAGTTTTGTCAAATTGATTATTTTTTCTGTGAAATAAAAAGATCATTGTAAATAAAATTATTGGAAAATTCCAAAAAAAAAATTGAAATTCAGAAATTCAGAAATTCAGAAATGTCTAAAAATAATCTACAAAAATTGACATGATTGGGAAGTTTTTGAATTCAAAGATTTATTTTTTAAAAATCGATTTTTCCATCTTTCGGGGGCAATAGAATTTCTGGATTTCTGAACTTCTGAACTTCTGAAATTTTTAAAAATCGGAATATCTAGCTTATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATCCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGNNNNNNNNNNGCTGCTCTCGAGTTCGTGATTCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATATG</site>
                <isoschizomers>
                    <enzyme>FauNDI</enzyme>
                    <enzyme>NdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCAAACTGATTGTATTTTGGTA</pcr_primer_p1>
		<pcr_primer_p2>AGAAAGTCGAAAATTTGAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATCAAACTGATTGTATTTTGGTAAGACTATGAGGTTAATCAAATATAAACGTATGAAGAGTTTTGAAAAAAAAAATTGAAACAGCAATATTTTTTATTTTTACAAGTTTCAAGTTATCAGAATTTTCAGACTTTTAAGCGCACTTACATATGTCTAAAATAGCAATTTTAGTTAAATTGAGATTTTCAAATTATTTCGAAAAGTTTCAAAAAAAATGAAACGGCAATTCTTCAAATTTTCGACTTTCT</canonical_amplicon>
		<polymorphic_amplicon>GATCAAACTGATTGTATTTTGGTAAGACTATGAGGTTAATCAAATATAAACGTATGAAGAGTTTTGAAAAAAAAAATTGAAACAGCAATATTTTTTATTTTTACAAGTTTCAAGTTATCAGAATTTTCAGACTTTTAAGCGCACTTAYATATGTCTAAAATAGCAATTTTAGTTAAATTGAGATTTTCAAATTATTTCGAAAAGTTTCAAAAAAAATGAAACGGCAATTCTTCAAATTTTCGACTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31728</snp_id>
        <super_contig>c006601016.Contig2</super_contig>
        <contig_pos>40107</contig_pos>
        <strand>+</strand>
        <context>GGGCGAAAAC[G/T]TGAAGTTTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAAAATGAAACGGCAATTCTTCAAATTTTCGACTTTCTGGGCGAAAAC</left_flank>
        <right_flank>TGAAGTTTTGTCAAATTGATTATTTTTTCTGTGAAATAAAAAGATCATTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCAGTTTCAAAATTTTTCAAAAATATCAATTTCATCGAATTTCGTATTGTAACCAAAAGGCTAAAAAAAATTCTGGAATTTCCAAAAATTTTGCCAAAAACATCAATAAACAATCGCTGTTTCAAATTTTTATAAAATTGTTAATAGTAAAGATTTTTGAAACAGTAATTTTTCCTAAAAATCACGATTTTCATCGATTTTGCAGGCCAACTTTTTTTGTGAGTTTCTCAAATTTTCAGATCAAACTGATTGTATTTTGGTAAGACTATGAGGTTAATCAAATATAAACGTATGAAGAGTTTTGAAAAAAAAAATTGAAACAGCAATATTTTTTATTTTTACAAGTTTCAAGTTATCAGAATTTTCAGACTTTTAAGCGCACTTACATATGTCTAAAATAGCAATTTTAGTTAAATTGAGATTTTCAAATTATTTCGAAAAGTTTCAAAAAAAATGAAACGGCAATTCTTCAAATTTTCGACTTTCTGGGCGAAAACATGAAGTTTTGTCAAATTGATTATTTTTTCTGTGAAATAAAAAGATCATTGTAAATAAAATTATTGGAAAATTCCAAAAAAAAAATTGAAATTCAGAAATTCAGAAATTCAGAAATGTCTAAAAATAATCTACAAAAATTGACATGATTGGGAAGTTTTTGAATTCAAAGATTTATTTTTTAAAAATCGATTTTTCCATCTTTCGGGGGCAATAGAATTTCTGGATTTCTGAACTTCTGAACTTCTGAAATTTTTAAAAATCGGAATATCTAGCTTATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATCCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGNNNNNNNNNNGCTGCTCTCGAGTTCGTGATTCCAATTTTCCATCTTCTTCGGACCCAACAATCAGCCTAGATTGAATATTCGCAATCCGTTCAGCCACTCTCTTCTGCTCAATTCTCTCCTTCTCCAGAAGCTCATGTTTCTCCTGA</canonical>
            <polymorphic>TTGCAGTTTCAAAATTTTTCAAAAATATCAATTTCATCGAATTTCGTATTGTAACCAAAAGGCTAAAAAAAATTCTGGAATTTCCAAAAATTTTGCCAAAAACATCAATAAACAATCGCTGTTTCAAATTTTTATAAAATTGTTAATAGTAAAGATTTTTGAAACAGTAATTTTTCCTAAAAATCACGATTTTCATCGATTTTGCAGGCCAACTTTTTTTGTGAGTTTCTCAAATTTTCAGATCAAACTGATTGTATTTTGGTAAGACTATGAGGTTAATCAAATATAAACGTATGAAGAGTTTTGAAAAAAAAAATTGAAACAGCAATATTTTTTATTTTTACAAGTTTCAAGTTATCAGAATTTTCAGACTTTTAAGCGCACTTACATATGTCTAAAATAGCAATTTTAGTTAAATTGAGATTTTCAAATTATTTCGAAAAGTTTCAAAAAAAATGAAACGGCAATTCTTCAAATTTTCGACTTTCTGGGCGAAAACKTGAAGTTTTGTCAAATTGATTATTTTTTCTGTGAAATAAAAAGATCATTGTAAATAAAATTATTGGAAAATTCCAAAAAAAAAATTGAAATTCAGAAATTCAGAAATTCAGAAATGTCTAAAAATAATCTACAAAAATTGACATGATTGGGAAGTTTTTGAATTCAAAGATTTATTTTTTAAAAATCGATTTTTCCATCTTTCGGGGGCAATAGAATTTCTGGATTTCTGAACTTCTGAACTTCTGAAATTTTTAAAAATCGGAATATCTAGCTTATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATCCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGNNNNNNNNNNGCTGCTCTCGAGTTCGTGATTCCAATTTTCCATCTTCTTCGGACCCAACAATCAGCCTAGATTGAATATTCGCAATCCGTTCAGCCACTCTCTTCTGCTCAATTCTCTCCTTCTCCAGAAGCTCATGTTTCTCCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>499 345 143 13</canonical_bands>
                <polymorphic_bands>642 345 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAGAATTTTCAGACTTTTAAGC</pcr_primer_p1>
		<pcr_primer_p2>CAATCATGTCAATTTTTGTAGATT</pcr_primer_p2>
		<pcr_amplicon_size>292</pcr_amplicon_size>
		<canonical_amplicon>TCAGAATTTTCAGACTTTTAAGCGCACTTACATATGTCTAAAATAGCAATTTTAGTTAAATTGAGATTTTCAAATTATTTCGAAAAGTTTCAAAAAAAATGAAACGGCAATTCTTCAAATTTTCGACTTTCTGGGCGAAAACATGAAGTTTTGTCAAATTGATTATTTTTTCTGTGAAATAAAAAGATCATTGTAAATAAAATTATTGGAAAATTCCAAAAAAAAAATTGAAATTCAGAAATTCAGAAATTCAGAAATGTCTAAAAATAATCTACAAAAATTGACATGATTG</canonical_amplicon>
		<polymorphic_amplicon>TCAGAATTTTCAGACTTTTAAGCGCACTTACATATGTCTAAAATAGCAATTTTAGTTAAATTGAGATTTTCAAATTATTTCGAAAAGTTTCAAAAAAAATGAAACGGCAATTCTTCAAATTTTCGACTTTCTGGGCGAAAACKTGAAGTTTTGTCAAATTGATTATTTTTTCTGTGAAATAAAAAGATCATTGTAAATAAAATTATTGGAAAATTCCAAAAAAAAAATTGAAATTCAGAAATTCAGAAATTCAGAAATGTCTAAAAATAATCTACAAAAATTGACATGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31729</snp_id>
        <super_contig>c006601016.Contig2</super_contig>
        <contig_pos>40158</contig_pos>
        <strand></strand>
        <context>AAGATCATTG[T/G]AAATAAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TGAAGTTTTGTCAAATTGATTATTTTTTCTGTGAAATAAAAAGATCATTG</left_flank>
        <right_flank>AAATAAAATTATTGGAAAATTCCAAAAAAAAAATTGAAATTCAGAAATTC</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACCAAAAGGCTAAAAAAAATTCTGGAATTTCCAAAAATTTTGCCAAAAACATCAATAAACAATCGCTGTTTCAAATTTTTATAAAATTGTTAATAGTAAAGATTTTTGAAACAGTAATTTTTCCTAAAAATCACGATTTTCATCGATTTTGCAGGCCAACTTTTTTTGTGAGTTTCTCAAATTTTCAGATCAAACTGATTGTATTTTGGTAAGACTATGAGGTTAATCAAATATAAACGTATGAAGAGTTTTGAAAAAAAAAATTGAAACAGCAATATTTTTTATTTTTACAAGTTTCAAGTTATCAGAATTTTCAGACTTTTAAGCGCACTTACATATGTCTAAAATAGCAATTTTAGTTAAATTGAGATTTTCAAATTATTTCGAAAAGTTTCAAAAAAAATGAAACGGCAATTCTTCAAATTTTCGACTTTCTGGGCGAAAACATGAAGTTTTGTCAAATTGATTATTTTTTCTGTGAAATAAAAAGATCATTGTAAATAAAATTATTGGAAAATTCCAAAAAAAAAATTGAAATTCAGAAATTCAGAAATTCAGAAATGTCTAAAAATAATCTACAAAAATTGACATGATTGGGAAGTTTTTGAATTCAAAGATTTATTTTTTAAAAATCGATTTTTCCATCTTTCGGGGGCAATAGAATTTCTGGATTTCTGAACTTCTGAACTTCTGAAATTTTTAAAAATCGGAATATCTAGCTTATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATCCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGNNNNNNNNNNGCTGCTCTCGAGTTCGTGATTCCAATTTTCCATCTTCTTCGGACCCAACAATCAGCCTAGATTGAATATTCGCAATCCGTTCAGCCACTCTCTTCTGCTCAATTCTCTCCTTCTCCAGAAGCTCATGTTTCTCCTGAATCTCCCTTATCAGCCTATCTTTCTCCTGTTTTATCAGTGAATCATCCTTT</canonical>
            <polymorphic>TAACCAAAAGGCTAAAAAAAATTCTGGAATTTCCAAAAATTTTGCCAAAAACATCAATAAACAATCGCTGTTTCAAATTTTTATAAAATTGTTAATAGTAAAGATTTTTGAAACAGTAATTTTTCCTAAAAATCACGATTTTCATCGATTTTGCAGGCCAACTTTTTTTGTGAGTTTCTCAAATTTTCAGATCAAACTGATTGTATTTTGGTAAGACTATGAGGTTAATCAAATATAAACGTATGAAGAGTTTTGAAAAAAAAAATTGAAACAGCAATATTTTTTATTTTTACAAGTTTCAAGTTATCAGAATTTTCAGACTTTTAAGCGCACTTACATATGTCTAAAATAGCAATTTTAGTTAAATTGAGATTTTCAAATTATTTCGAAAAGTTTCAAAAAAAATGAAACGGCAATTCTTCAAATTTTCGACTTTCTGGGCGAAAACATGAAGTTTTGTCAAATTGATTATTTTTTCTGTGAAATAAAAAGATCATTGKAAATAAAATTATTGGAAAATTCCAAAAAAAAAATTGAAATTCAGAAATTCAGAAATTCAGAAATGTCTAAAAATAATCTACAAAAATTGACATGATTGGGAAGTTTTTGAATTCAAAGATTTATTTTTTAAAAATCGATTTTTCCATCTTTCGGGGGCAATAGAATTTCTGGATTTCTGAACTTCTGAACTTCTGAAATTTTTAAAAATCGGAATATCTAGCTTATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATCCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGNNNNNNNNNNGCTGCTCTCGAGTTCGTGATTCCAATTTTCCATCTTCTTCGGACCCAACAATCAGCCTAGATTGAATATTCGCAATCCGTTCAGCCACTCTCTTCTGCTCAATTCTCTCCTTCTCCAGAAGCTCATGTTTCTCCTGAATCTCCCTTATCAGCCTATCTTTCTCCTGTTTTATCAGTGAATCATCCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCTTCAAATTTTCGACTTTC</pcr_primer_p1>
		<pcr_primer_p2>CCCAATCATGTCAATTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>186</pcr_amplicon_size>
		<canonical_amplicon>AATTCTTCAAATTTTCGACTTTCTGGGCGAAAACATGAAGTTTTGTCAAATTGATTATTTTTTCTGTGAAATAAAAAGATCATTGTAAATAAAATTATTGGAAAATTCCAAAAAAAAAATTGAAATTCAGAAATTCAGAAATTCAGAAATGTCTAAAAATAATCTACAAAAATTGACATGATTGGG</canonical_amplicon>
		<polymorphic_amplicon>AATTCTTCAAATTTTCGACTTTCTGGGCGAAAACATGAAGTTTTGTCAAATTGATTATTTTTTCTGTGAAATAAAAAGATCATTGKAAATAAAATTATTGGAAAATTCCAAAAAAAAAATTGAAATTCAGAAATTCAGAAATTCAGAAATGTCTAAAAATAATCTACAAAAATTGACATGATTGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31730</snp_id>
        <super_contig>c006601016.Contig2</super_contig>
        <contig_pos>40274</contig_pos>
        <strand></strand>
        <context>tttgaattca[A/G]agatttattt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTAAAAATAATCTACAAAAATTGACATGATTGGGAAGTTTTTGAATTCA</left_flank>
        <right_flank>AGATTTATTTTTTAAAAATCGATTTTTCCATCTTTCGGGGGCAATAGAAT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTTTTCCTAAAAATCACGATTTTCATCGATTTTGCAGGCCAACTTTTTTTGTGAGTTTCTCAAATTTTCAGATCAAACTGATTGTATTTTGGTAAGACTATGAGGTTAATCAAATATAAACGTATGAAGAGTTTTGAAAAAAAAAATTGAAACAGCAATATTTTTTATTTTTACAAGTTTCAAGTTATCAGAATTTTCAGACTTTTAAGCGCACTTACATATGTCTAAAATAGCAATTTTAGTTAAATTGAGATTTTCAAATTATTTCGAAAAGTTTCAAAAAAAATGAAACGGCAATTCTTCAAATTTTCGACTTTCTGGGCGAAAACATGAAGTTTTGTCAAATTGATTATTTTTTCTGTGAAATAAAAAGATCATTGTAAATAAAATTATTGGAAAATTCCAAAAAAAAAATTGAAATTCAGAAATTCAGAAATTCAGAAATGTCTAAAAATAATCTACAAAAATTGACATGATTGGGAAGTTTTTGAATTCAAAGATTTATTTTTTAAAAATCGATTTTTCCATCTTTCGGGGGCAATAGAATTTCTGGATTTCTGAACTTCTGAACTTCTGAAATTTTTAAAAATCGGAATATCTAGCTTATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATCCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGNNNNNNNNNNGCTGCTCTCGAGTTCGTGATTCCAATTTTCCATCTTCTTCGGACCCAACAATCAGCCTAGATTGAATATTCGCAATCCGTTCAGCCACTCTCTTCTGCTCAATTCTCTCCTTCTCCAGAAGCTCATGTTTCTCCTGAATCTCCCTTATCAGCCTATCTTTCTCCTGTTTTATCAGTGAATCATCCTTTTGAATAGCCTCCAAGTCATCCTCCAATTTCGCTCGTTCCGAAGCATAGTAGCTCTCTCCACCTCTACTTTTCAACTTCCTCCTGCTCAGCTGCTCCTTAAGCATCTCAATTTCCTC</canonical>
            <polymorphic>TAATTTTTCCTAAAAATCACGATTTTCATCGATTTTGCAGGCCAACTTTTTTTGTGAGTTTCTCAAATTTTCAGATCAAACTGATTGTATTTTGGTAAGACTATGAGGTTAATCAAATATAAACGTATGAAGAGTTTTGAAAAAAAAAATTGAAACAGCAATATTTTTTATTTTTACAAGTTTCAAGTTATCAGAATTTTCAGACTTTTAAGCGCACTTACATATGTCTAAAATAGCAATTTTAGTTAAATTGAGATTTTCAAATTATTTCGAAAAGTTTCAAAAAAAATGAAACGGCAATTCTTCAAATTTTCGACTTTCTGGGCGAAAACATGAAGTTTTGTCAAATTGATTATTTTTTCTGTGAAATAAAAAGATCATTGTAAATAAAATTATTGGAAAATTCCAAAAAAAAAATTGAAATTCAGAAATTCAGAAATTCAGAAATGTCTAAAAATAATCTACAAAAATTGACATGATTGGGAAGTTTTTGAATTCARAGATTTATTTTTTAAAAATCGATTTTTCCATCTTTCGGGGGCAATAGAATTTCTGGATTTCTGAACTTCTGAACTTCTGAAATTTTTAAAAATCGGAATATCTAGCTTATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATCCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGNNNNNNNNNNGCTGCTCTCGAGTTCGTGATTCCAATTTTCCATCTTCTTCGGACCCAACAATCAGCCTAGATTGAATATTCGCAATCCGTTCAGCCACTCTCTTCTGCTCAATTCTCTCCTTCTCCAGAAGCTCATGTTTCTCCTGAATCTCCCTTATCAGCCTATCTTTCTCCTGTTTTATCAGTGAATCATCCTTTTGAATAGCCTCCAAGTCATCCTCCAATTTCGCTCGTTCCGAAGCATAGTAGCTCTCTCCACCTCTACTTTTCAACTTCCTCCTGCTCAGCTGCTCCTTAAGCATCTCAATTTCCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGTTTTGTCAAATTGATTATT</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTGGAATCACGAACTC</pcr_primer_p2>
		<pcr_amplicon_size>393</pcr_amplicon_size>
		<canonical_amplicon>TGAAGTTTTGTCAAATTGATTATTTTTTCTGTGAAATAAAAAGATCATTGTAAATAAAATTATTGGAAAATTCCAAAAAAAAAATTGAAATTCAGAAATTCAGAAATTCAGAAATGTCTAAAAATAATCTACAAAAATTGACATGATTGGGAAGTTTTTGAATTCAAAGATTTATTTTTTAAAAATCGATTTTTCCATCTTTCGGGGGCAATAGAATTTCTGGATTTCTGAACTTCTGAACTTCTGAAATTTTTAAAAATCGGAATATCTAGCTTATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATCCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGNNNNNNNNNNGCTGCTCTCGAGTTCGTGATTCCAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>TGAAGTTTTGTCAAATTGATTATTTTTTCTGTGAAATAAAAAGATCATTGTAAATAAAATTATTGGAAAATTCCAAAAAAAAAATTGAAATTCAGAAATTCAGAAATTCAGAAATGTCTAAAAATAATCTACAAAAATTGACATGATTGGGAAGTTTTTGAATTCARAGATTTATTTTTTAAAAATCGATTTTTCCATCTTTCGGGGGCAATAGAATTTCTGGATTTCTGAACTTCTGAACTTCTGAAATTTTTAAAAATCGGAATATCTAGCTTATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATCCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGNNNNNNNNNNGCTGCTCTCGAGTTCGTGATTCCAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31731</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>3201</contig_pos>
        <strand></strand>
        <context>CAAATCATAG[A/T]GTGTCAGAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TACCCCCCCCCCCCCCCCTTTTCTTTTCCTCGTTCATTTTCAAATCATAG</left_flank>
        <right_flank>GTGTCAGAGTTTATAAAGAAGAGGACAAAAAATGGAGAAGAAGAAGATGG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCCAATTGAATACTGTACACAAATTGTAATACTCTTACACACATAAAGAAATATATTTTTCTATCCAAATGTCAGACGCATTGCAACAGTGCTTCTTCATTCGGAACTCATCTCTCCCGAGTCCAAATCAAATTCTCAAACAAAAAGTGAAGAGTGCCGTCGAAATTGCATTTTCAAGTGTTTAGGAATCCCTCTTTTTTCGACTAGAACATGCAGATTCGCCTCTATTTTTTTCCAACAAAAAAAATAAAGCGGAAATGGGACAAAGGAAAAAGAAATGTTTCGAAATGCACTGATTGTCCTTCTCTAAAGTTCCCCTTTGAATCAAACAACGTATCGTTAGGCGTCAGTTGTACATATCTCCTCTTTTAAATTGGCTTTCGATCTGTCGGAATCCAAATCGAGTTTCTATTTCCGCCCTTCTCTATCCCTCCCTTTAGGGACCACTACCCCCCCCCCCCCCCCTTTTCTTTTCCTCGTTCATTTTCAAATCATAGAGTGTCAGAGTTTATAAAGAAGAGGACAAAAAATGGAGAAGAAGAAGATGGGGTGGGTCACCAACAGAAAGCGACACATGCTTTTTGTCAAAAACCATGAAAAAAAGAAGTCAAATAAAGGGCATGAATCAAAAAATATCGAATTTCAAAATGCTTAGAAAGCTCTGGAAATTAGGAGAAGAATACGCCAGACTTGCTAAGACTCGCAGCCCCAAAATTAGAAGAAATATTTACTGTGATATTGGGTGGAATGGAAAAAGGATAAATTGAAAATAAAAACTGGCAAAGAATTTTTCTGGAAAAGTTTTGGAATCGAGAAGTGTACCGGAATTCTCCGAATCAAAGTGACGAAGTACCAGAATTCAAAATATTCAATGGTTTGAAAGGGGGGTTCTGACCAAAATGCTTTGTAGTTTTTGCATTAACATATTCCCAAAATTATGTTTTCCATAACAACGAGATTTTTCTGTTCTCTTCATTGAGTTTTTCATCAAATAATCC</canonical>
            <polymorphic>CATCCAATTGAATACTGTACACAAATTGTAATACTCTTACACACATAAAGAAATATATTTTTCTATCCAAATGTCAGACGCATTGCAACAGTGCTTCTTCATTCGGAACTCATCTCTCCCGAGTCCAAATCAAATTCTCAAACAAAAAGTGAAGAGTGCCGTCGAAATTGCATTTTCAAGTGTTTAGGAATCCCTCTTTTTTCGACTAGAACATGCAGATTCGCCTCTATTTTTTTCCAACAAAAAAAATAAAGCGGAAATGGGACAAAGGAAAAAGAAATGTTTCGAAATGCACTGATTGTCCTTCTCTAAAGTTCCCCTTTGAATCAAACAACGTATCGTTAGGCGTCAGTTGTACATATCTCCTCTTTTAAATTGGCTTTCGATCTGTCGGAATCCAAATCGAGTTTCTATTTCCGCCCTTCTCTATCCCTCCCTTTAGGGACCACTACCCCCCCCCCCCCCCCTTTTCTTTTCCTCGTTCATTTTCAAATCATAGWGTGTCAGAGTTTATAAAGAAGAGGACAAAAAATGGAGAAGAAGAAGATGGGGTGGGTCACCAACAGAAAGCGACACATGCTTTTTGTCAAAAACCATGAAAAAAAGAAGTCAAATAAAGGGCATGAATCAAAAAATATCGAATTTCAAAATGCTTAGAAAGCTCTGGAAATTAGGAGAAGAATACGCCAGACTTGCTAAGACTCGCAGCCCCAAAATTAGAAGAAATATTTACTGTGATATTGGGTGGAATGGAAAAAGGATAAATTGAAAATAAAAACTGGCAAAGAATTTTTCTGGAAAAGTTTTGGAATCGAGAAGTGTACCGGAATTCTCCGAATCAAAGTGACGAAGTACCAGAATTCAAAATATTCAATGGTTTGAAAGGGGGGTTCTGACCAAAATGCTTTGTAGTTTTTGCATTAACATATTCCCAAAATTATGTTTTCCATAACAACGAGATTTTTCTGTTCTCTTCATTGAGTTTTTCATCAAATAATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATTGGCTTTCGATCTGT</pcr_primer_p1>
		<pcr_primer_p2>GCCCTTTATTTGACTTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAAATTGGCTTTCGATCTGTCGGAATCCAAATCGAGTTTCTATTTCCGCCCTTCTCTATCCCTCCCTTTAGGGACCACTACCCCCCCCCCCCCCCCTTTTCTTTTCCTCGTTCATTTTCAAATCATAGAGTGTCAGAGTTTATAAAGAAGAGGACAAAAAATGGAGAAGAAGAAGATGGGGTGGGTCACCAACAGAAAGCGACACATGCTTTTTGTCAAAAACCATGAAAAAAAGAAGTCAAATAAAGGGC</canonical_amplicon>
		<polymorphic_amplicon>TAAATTGGCTTTCGATCTGTCGGAATCCAAATCGAGTTTCTATTTCCGCCCTTCTCTATCCCTCCCTTTAGGGACCACTACCCCCCCCCCCCCCCCTTTTCTTTTCCTCGTTCATTTTCAAATCATAGWGTGTCAGAGTTTATAAAGAAGAGGACAAAAAATGGAGAAGAAGAAGATGGGGTGGGTCACCAACAGAAAGCGACACATGCTTTTTGTCAAAAACCATGAAAAAAAGAAGTCAAATAAAGGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31732</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>3422</contig_pos>
        <strand></strand>
        <context>CCAAAATTAG[A/C]AGAAATATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTAGGAGAAGAATACGCCAGACTTGCTAAGACTCGCAGCCCCAAAATTAG</left_flank>
        <right_flank>AGAAATATTTACTGTGATATTGGGTGGAATGGAAAAAGGATAAATTGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCCTCTATTTTTTTCCAACAAAAAAAATAAAGCGGAAATGGGACAAAGGAAAAAGAAATGTTTCGAAATGCACTGATTGTCCTTCTCTAAAGTTCCCCTTTGAATCAAACAACGTATCGTTAGGCGTCAGTTGTACATATCTCCTCTTTTAAATTGGCTTTCGATCTGTCGGAATCCAAATCGAGTTTCTATTTCCGCCCTTCTCTATCCCTCCCTTTAGGGACCACTACCCCCCCCCCCCCCCCTTTTCTTTTCCTCGTTCATTTTCAAATCATAGAGTGTCAGAGTTTATAAAGAAGAGGACAAAAAATGGAGAAGAAGAAGATGGGGTGGGTCACCAACAGAAAGCGACACATGCTTTTTGTCAAAAACCATGAAAAAAAGAAGTCAAATAAAGGGCATGAATCAAAAAATATCGAATTTCAAAATGCTTAGAAAGCTCTGGAAATTAGGAGAAGAATACGCCAGACTTGCTAAGACTCGCAGCCCCAAAATTAGAAGAAATATTTACTGTGATATTGGGTGGAATGGAAAAAGGATAAATTGAAAATAAAAACTGGCAAAGAATTTTTCTGGAAAAGTTTTGGAATCGAGAAGTGTACCGGAATTCTCCGAATCAAAGTGACGAAGTACCAGAATTCAAAATATTCAATGGTTTGAAAGGGGGGTTCTGACCAAAATGCTTTGTAGTTTTTGCATTAACATATTCCCAAAATTATGTTTTCCATAACAACGAGATTTTTCTGTTCTCTTCATTGAGTTTTTCATCAAATAATCCAGATTTTTGTGAAAATACAGAAAAAAAACGACCAGAAACGGCGAAAAGTCGCATGAAAAAACAGCGCACACAGTGGCCGTGGAGTAGGATTCCCGCGGCCCTCTTGGAAGAGAAATGAGAGCGCTTGCAATTTCGACAGCGTTTTTCAGAGAATTCAAAATCTACTGAAATTTTTCGAAGTGATATTTCAAAAATACACGACGCTGGGAGCATTTTAATGC</canonical>
            <polymorphic>CGCCTCTATTTTTTTCCAACAAAAAAAATAAAGCGGAAATGGGACAAAGGAAAAAGAAATGTTTCGAAATGCACTGATTGTCCTTCTCTAAAGTTCCCCTTTGAATCAAACAACGTATCGTTAGGCGTCAGTTGTACATATCTCCTCTTTTAAATTGGCTTTCGATCTGTCGGAATCCAAATCGAGTTTCTATTTCCGCCCTTCTCTATCCCTCCCTTTAGGGACCACTACCCCCCCCCCCCCCCCTTTTCTTTTCCTCGTTCATTTTCAAATCATAGAGTGTCAGAGTTTATAAAGAAGAGGACAAAAAATGGAGAAGAAGAAGATGGGGTGGGTCACCAACAGAAAGCGACACATGCTTTTTGTCAAAAACCATGAAAAAAAGAAGTCAAATAAAGGGCATGAATCAAAAAATATCGAATTTCAAAATGCTTAGAAAGCTCTGGAAATTAGGAGAAGAATACGCCAGACTTGCTAAGACTCGCAGCCCCAAAATTAGMAGAAATATTTACTGTGATATTGGGTGGAATGGAAAAAGGATAAATTGAAAATAAAAACTGGCAAAGAATTTTTCTGGAAAAGTTTTGGAATCGAGAAGTGTACCGGAATTCTCCGAATCAAAGTGACGAAGTACCAGAATTCAAAATATTCAATGGTTTGAAAGGGGGGTTCTGACCAAAATGCTTTGTAGTTTTTGCATTAACATATTCCCAAAATTATGTTTTCCATAACAACGAGATTTTTCTGTTCTCTTCATTGAGTTTTTCATCAAATAATCCAGATTTTTGTGAAAATACAGAAAAAAAACGACCAGAAACGGCGAAAAGTCGCATGAAAAAACAGCGCACACAGTGGCCGTGGAGTAGGATTCCCGCGGCCCTCTTGGAAGAGAAATGAGAGCGCTTGCAATTTCGACAGCGTTTTTCAGAGAATTCAAAATCTACTGAAATTTTTCGAAGTGATATTTCAAAAATACACGACGCTGGGAGCATTTTAATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAAATTAGGAGAAGAATACG</pcr_primer_p1>
		<pcr_primer_p2>AACTACAAAGCATTTTGGTCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGAAATTAGGAGAAGAATACGCCAGACTTGCTAAGACTCGCAGCCCCAAAATTAGAAGAAATATTTACTGTGATATTGGGTGGAATGGAAAAAGGATAAATTGAAAATAAAAACTGGCAAAGAATTTTTCTGGAAAAGTTTTGGAATCGAGAAGTGTACCGGAATTCTCCGAATCAAAGTGACGAAGTACCAGAATTCAAAATATTCAATGGTTTGAAAGGGGGGTTCTGACCAAAATGCTTTGTAGTT</canonical_amplicon>
		<polymorphic_amplicon>TGGAAATTAGGAGAAGAATACGCCAGACTTGCTAAGACTCGCAGCCCCAAAATTAGMAGAAATATTTACTGTGATATTGGGTGGAATGGAAAAAGGATAAATTGAAAATAAAAACTGGCAAAGAATTTTTCTGGAAAAGTTTTGGAATCGAGAAGTGTACCGGAATTCTCCGAATCAAAGTGACGAAGTACCAGAATTCAAAATATTCAATGGTTTGAAAGGGGGGTTCTGACCAAAATGCTTTGTAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31733</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>3434</contig_pos>
        <strand></strand>
        <context>GAAATATTTA[C/T]TGTGATATTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACGCCAGACTTGCTAAGACTCGCAGCCCCAAAATTAGAAGAAATATTTA</left_flank>
        <right_flank>TGTGATATTGGGTGGAATGGAAAAAGGATAAATTGAAAATAAAAACTGGC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCCAACAAAAAAAATAAAGCGGAAATGGGACAAAGGAAAAAGAAATGTTTCGAAATGCACTGATTGTCCTTCTCTAAAGTTCCCCTTTGAATCAAACAACGTATCGTTAGGCGTCAGTTGTACATATCTCCTCTTTTAAATTGGCTTTCGATCTGTCGGAATCCAAATCGAGTTTCTATTTCCGCCCTTCTCTATCCCTCCCTTTAGGGACCACTACCCCCCCCCCCCCCCCTTTTCTTTTCCTCGTTCATTTTCAAATCATAGAGTGTCAGAGTTTATAAAGAAGAGGACAAAAAATGGAGAAGAAGAAGATGGGGTGGGTCACCAACAGAAAGCGACACATGCTTTTTGTCAAAAACCATGAAAAAAAGAAGTCAAATAAAGGGCATGAATCAAAAAATATCGAATTTCAAAATGCTTAGAAAGCTCTGGAAATTAGGAGAAGAATACGCCAGACTTGCTAAGACTCGCAGCCCCAAAATTAGAAGAAATATTTACTGTGATATTGGGTGGAATGGAAAAAGGATAAATTGAAAATAAAAACTGGCAAAGAATTTTTCTGGAAAAGTTTTGGAATCGAGAAGTGTACCGGAATTCTCCGAATCAAAGTGACGAAGTACCAGAATTCAAAATATTCAATGGTTTGAAAGGGGGGTTCTGACCAAAATGCTTTGTAGTTTTTGCATTAACATATTCCCAAAATTATGTTTTCCATAACAACGAGATTTTTCTGTTCTCTTCATTGAGTTTTTCATCAAATAATCCAGATTTTTGTGAAAATACAGAAAAAAAACGACCAGAAACGGCGAAAAGTCGCATGAAAAAACAGCGCACACAGTGGCCGTGGAGTAGGATTCCCGCGGCCCTCTTGGAAGAGAAATGAGAGCGCTTGCAATTTCGACAGCGTTTTTCAGAGAATTCAAAATCTACTGAAATTTTTCGAAGTGATATTTCAAAAATACACGACGCTGGGAGCATTTTAATGCAAAAAGTACACA</canonical>
            <polymorphic>TTTCCAACAAAAAAAATAAAGCGGAAATGGGACAAAGGAAAAAGAAATGTTTCGAAATGCACTGATTGTCCTTCTCTAAAGTTCCCCTTTGAATCAAACAACGTATCGTTAGGCGTCAGTTGTACATATCTCCTCTTTTAAATTGGCTTTCGATCTGTCGGAATCCAAATCGAGTTTCTATTTCCGCCCTTCTCTATCCCTCCCTTTAGGGACCACTACCCCCCCCCCCCCCCCTTTTCTTTTCCTCGTTCATTTTCAAATCATAGAGTGTCAGAGTTTATAAAGAAGAGGACAAAAAATGGAGAAGAAGAAGATGGGGTGGGTCACCAACAGAAAGCGACACATGCTTTTTGTCAAAAACCATGAAAAAAAGAAGTCAAATAAAGGGCATGAATCAAAAAATATCGAATTTCAAAATGCTTAGAAAGCTCTGGAAATTAGGAGAAGAATACGCCAGACTTGCTAAGACTCGCAGCCCCAAAATTAGAAGAAATATTTAYTGTGATATTGGGTGGAATGGAAAAAGGATAAATTGAAAATAAAAACTGGCAAAGAATTTTTCTGGAAAAGTTTTGGAATCGAGAAGTGTACCGGAATTCTCCGAATCAAAGTGACGAAGTACCAGAATTCAAAATATTCAATGGTTTGAAAGGGGGGTTCTGACCAAAATGCTTTGTAGTTTTTGCATTAACATATTCCCAAAATTATGTTTTCCATAACAACGAGATTTTTCTGTTCTCTTCATTGAGTTTTTCATCAAATAATCCAGATTTTTGTGAAAATACAGAAAAAAAACGACCAGAAACGGCGAAAAGTCGCATGAAAAAACAGCGCACACAGTGGCCGTGGAGTAGGATTCCCGCGGCCCTCTTGGAAGAGAAATGAGAGCGCTTGCAATTTCGACAGCGTTTTTCAGAGAATTCAAAATCTACTGAAATTTTTCGAAGTGATATTTCAAAAATACACGACGCTGGGAGCATTTTAATGCAAAAAGTACACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 338 161</canonical_bands>
                <polymorphic_bands>839 161</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGAAATTAGGAGAAGAATACG</pcr_primer_p1>
		<pcr_primer_p2>AACTACAAAGCATTTTGGTCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGAAATTAGGAGAAGAATACGCCAGACTTGCTAAGACTCGCAGCCCCAAAATTAGAAGAAATATTTACTGTGATATTGGGTGGAATGGAAAAAGGATAAATTGAAAATAAAAACTGGCAAAGAATTTTTCTGGAAAAGTTTTGGAATCGAGAAGTGTACCGGAATTCTCCGAATCAAAGTGACGAAGTACCAGAATTCAAAATATTCAATGGTTTGAAAGGGGGGTTCTGACCAAAATGCTTTGTAGTT</canonical_amplicon>
		<polymorphic_amplicon>TGGAAATTAGGAGAAGAATACGCCAGACTTGCTAAGACTCGCAGCCCCAAAATTAGAAGAAATATTTAYTGTGATATTGGGTGGAATGGAAAAAGGATAAATTGAAAATAAAAACTGGCAAAGAATTTTTCTGGAAAAGTTTTGGAATCGAGAAGTGTACCGGAATTCTCCGAATCAAAGTGACGAAGTACCAGAATTCAAAATATTCAATGGTTTGAAAGGGGGGTTCTGACCAAAATGCTTTGTAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31734</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>3556</contig_pos>
        <strand></strand>
        <context>TGACGAAGTA[C/A]CAGAATTCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTGGAATCGAGAAGTGTACCGGAATTCTCCGAATCAAAGTGACGAAGTA</left_flank>
        <right_flank>CAGAATTCAAAATATTCAATGGTTTGAAAGGGGGGTTCTGACCAAAATGC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACATATCTCCTCTTTTAAATTGGCTTTCGATCTGTCGGAATCCAAATCGAGTTTCTATTTCCGCCCTTCTCTATCCCTCCCTTTAGGGACCACTACCCCCCCCCCCCCCCCTTTTCTTTTCCTCGTTCATTTTCAAATCATAGAGTGTCAGAGTTTATAAAGAAGAGGACAAAAAATGGAGAAGAAGAAGATGGGGTGGGTCACCAACAGAAAGCGACACATGCTTTTTGTCAAAAACCATGAAAAAAAGAAGTCAAATAAAGGGCATGAATCAAAAAATATCGAATTTCAAAATGCTTAGAAAGCTCTGGAAATTAGGAGAAGAATACGCCAGACTTGCTAAGACTCGCAGCCCCAAAATTAGAAGAAATATTTACTGTGATATTGGGTGGAATGGAAAAAGGATAAATTGAAAATAAAAACTGGCAAAGAATTTTTCTGGAAAAGTTTTGGAATCGAGAAGTGTACCGGAATTCTCCGAATCAAAGTGACGAAGTACCAGAATTCAAAATATTCAATGGTTTGAAAGGGGGGTTCTGACCAAAATGCTTTGTAGTTTTTGCATTAACATATTCCCAAAATTATGTTTTCCATAACAACGAGATTTTTCTGTTCTCTTCATTGAGTTTTTCATCAAATAATCCAGATTTTTGTGAAAATACAGAAAAAAAACGACCAGAAACGGCGAAAAGTCGCATGAAAAAACAGCGCACACAGTGGCCGTGGAGTAGGATTCCCGCGGCCCTCTTGGAAGAGAAATGAGAGCGCTTGCAATTTCGACAGCGTTTTTCAGAGAATTCAAAATCTACTGAAATTTTTCGAAGTGATATTTCAAAAATACACGACGCTGGGAGCATTTTAATGCAAAAAGTACACAAATAATCCTCGGTCGGAATCCCCCTTTAGCCTGTCAGATAACCAAAAACGCAATCTCTAGAGAGGAATTTACAGATTTCGTAACTATTTTCACTACTAAGGCTAACTCTGGATTGTTGCCAT</canonical>
            <polymorphic>TACATATCTCCTCTTTTAAATTGGCTTTCGATCTGTCGGAATCCAAATCGAGTTTCTATTTCCGCCCTTCTCTATCCCTCCCTTTAGGGACCACTACCCCCCCCCCCCCCCCTTTTCTTTTCCTCGTTCATTTTCAAATCATAGAGTGTCAGAGTTTATAAAGAAGAGGACAAAAAATGGAGAAGAAGAAGATGGGGTGGGTCACCAACAGAAAGCGACACATGCTTTTTGTCAAAAACCATGAAAAAAAGAAGTCAAATAAAGGGCATGAATCAAAAAATATCGAATTTCAAAATGCTTAGAAAGCTCTGGAAATTAGGAGAAGAATACGCCAGACTTGCTAAGACTCGCAGCCCCAAAATTAGAAGAAATATTTACTGTGATATTGGGTGGAATGGAAAAAGGATAAATTGAAAATAAAAACTGGCAAAGAATTTTTCTGGAAAAGTTTTGGAATCGAGAAGTGTACCGGAATTCTCCGAATCAAAGTGACGAAGTAMCAGAATTCAAAATATTCAATGGTTTGAAAGGGGGGTTCTGACCAAAATGCTTTGTAGTTTTTGCATTAACATATTCCCAAAATTATGTTTTCCATAACAACGAGATTTTTCTGTTCTCTTCATTGAGTTTTTCATCAAATAATCCAGATTTTTGTGAAAATACAGAAAAAAAACGACCAGAAACGGCGAAAAGTCGCATGAAAAAACAGCGCACACAGTGGCCGTGGAGTAGGATTCCCGCGGCCCTCTTGGAAGAGAAATGAGAGCGCTTGCAATTTCGACAGCGTTTTTCAGAGAATTCAAAATCTACTGAAATTTTTCGAAGTGATATTTCAAAAATACACGACGCTGGGAGCATTTTAATGCAAAAAGTACACAAATAATCCTCGGTCGGAATCCCCCTTTAGCCTGTCAGATAACCAAAAACGCAATCTCTAGAGAGGAATTTACAGATTTCGTAACTATTTTCACTACTAAGGCTAACTCTGGATTGTTGCCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>467 375 127 31</canonical_bands>
                <polymorphic_bands>467 406 127</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGAAATTAGGAGAAGAATACG</pcr_primer_p1>
		<pcr_primer_p2>AACTACAAAGCATTTTGGTCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGAAATTAGGAGAAGAATACGCCAGACTTGCTAAGACTCGCAGCCCCAAAATTAGAAGAAATATTTACTGTGATATTGGGTGGAATGGAAAAAGGATAAATTGAAAATAAAAACTGGCAAAGAATTTTTCTGGAAAAGTTTTGGAATCGAGAAGTGTACCGGAATTCTCCGAATCAAAGTGACGAAGTACCAGAATTCAAAATATTCAATGGTTTGAAAGGGGGGTTCTGACCAAAATGCTTTGTAGTT</canonical_amplicon>
		<polymorphic_amplicon>TGGAAATTAGGAGAAGAATACGCCAGACTTGCTAAGACTCGCAGCCCCAAAATTAGAAGAAATATTTACTGTGATATTGGGTGGAATGGAAAAAGGATAAATTGAAAATAAAAACTGGCAAAGAATTTTTCTGGAAAAGTTTTGGAATCGAGAAGTGTACCGGAATTCTCCGAATCAAAGTGACGAAGTAMCAGAATTCAAAATATTCAATGGTTTGAAAGGGGGGTTCTGACCAAAATGCTTTGTAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31735</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>3629</contig_pos>
        <strand></strand>
        <context>GCATTAACAT[A/T]TTCCCAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGAAAGGGGGGTTCTGACCAAAATGCTTTGTAGTTTTTGCATTAACAT</left_flank>
        <right_flank>TTCCCAAAATTATGTTTTCCATAACAACGAGATTTTTCTGTTCTCTTCAT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCCTCCCTTTAGGGACCACTACCCCCCCCCCCCCCCCTTTTCTTTTCCTCGTTCATTTTCAAATCATAGAGTGTCAGAGTTTATAAAGAAGAGGACAAAAAATGGAGAAGAAGAAGATGGGGTGGGTCACCAACAGAAAGCGACACATGCTTTTTGTCAAAAACCATGAAAAAAAGAAGTCAAATAAAGGGCATGAATCAAAAAATATCGAATTTCAAAATGCTTAGAAAGCTCTGGAAATTAGGAGAAGAATACGCCAGACTTGCTAAGACTCGCAGCCCCAAAATTAGAAGAAATATTTACTGTGATATTGGGTGGAATGGAAAAAGGATAAATTGAAAATAAAAACTGGCAAAGAATTTTTCTGGAAAAGTTTTGGAATCGAGAAGTGTACCGGAATTCTCCGAATCAAAGTGACGAAGTACCAGAATTCAAAATATTCAATGGTTTGAAAGGGGGGTTCTGACCAAAATGCTTTGTAGTTTTTGCATTAACATATTCCCAAAATTATGTTTTCCATAACAACGAGATTTTTCTGTTCTCTTCATTGAGTTTTTCATCAAATAATCCAGATTTTTGTGAAAATACAGAAAAAAAACGACCAGAAACGGCGAAAAGTCGCATGAAAAAACAGCGCACACAGTGGCCGTGGAGTAGGATTCCCGCGGCCCTCTTGGAAGAGAAATGAGAGCGCTTGCAATTTCGACAGCGTTTTTCAGAGAATTCAAAATCTACTGAAATTTTTCGAAGTGATATTTCAAAAATACACGACGCTGGGAGCATTTTAATGCAAAAAGTACACAAATAATCCTCGGTCGGAATCCCCCTTTAGCCTGTCAGATAACCAAAAACGCAATCTCTAGAGAGGAATTTACAGATTTCGTAACTATTTTCACTACTAAGGCTAACTCTGGATTGTTGCCATAAGAAACCGGAAACATTGACATCTAAATTATCCTTCCCATCCTATCCTTCTTCTTCTTTTCTACCACTTGTAT</canonical>
            <polymorphic>ATCCCTCCCTTTAGGGACCACTACCCCCCCCCCCCCCCCTTTTCTTTTCCTCGTTCATTTTCAAATCATAGAGTGTCAGAGTTTATAAAGAAGAGGACAAAAAATGGAGAAGAAGAAGATGGGGTGGGTCACCAACAGAAAGCGACACATGCTTTTTGTCAAAAACCATGAAAAAAAGAAGTCAAATAAAGGGCATGAATCAAAAAATATCGAATTTCAAAATGCTTAGAAAGCTCTGGAAATTAGGAGAAGAATACGCCAGACTTGCTAAGACTCGCAGCCCCAAAATTAGAAGAAATATTTACTGTGATATTGGGTGGAATGGAAAAAGGATAAATTGAAAATAAAAACTGGCAAAGAATTTTTCTGGAAAAGTTTTGGAATCGAGAAGTGTACCGGAATTCTCCGAATCAAAGTGACGAAGTACCAGAATTCAAAATATTCAATGGTTTGAAAGGGGGGTTCTGACCAAAATGCTTTGTAGTTTTTGCATTAACATWTTCCCAAAATTATGTTTTCCATAACAACGAGATTTTTCTGTTCTCTTCATTGAGTTTTTCATCAAATAATCCAGATTTTTGTGAAAATACAGAAAAAAAACGACCAGAAACGGCGAAAAGTCGCATGAAAAAACAGCGCACACAGTGGCCGTGGAGTAGGATTCCCGCGGCCCTCTTGGAAGAGAAATGAGAGCGCTTGCAATTTCGACAGCGTTTTTCAGAGAATTCAAAATCTACTGAAATTTTTCGAAGTGATATTTCAAAAATACACGACGCTGGGAGCATTTTAATGCAAAAAGTACACAAATAATCCTCGGTCGGAATCCCCCTTTAGCCTGTCAGATAACCAAAAACGCAATCTCTAGAGAGGAATTTACAGATTTCGTAACTATTTTCACTACTAAGGCTAACTCTGGATTGTTGCCATAAGAAACCGGAAACATTGACATCTAAATTATCCTTCCCATCCTATCCTTCTTCTTCTTTTCTACCACTTGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCTCCGAATCAAAGTGAC</pcr_primer_p1>
		<pcr_primer_p2>GATTATTTGTGTACTTTTTGCATTA</pcr_primer_p2>
		<pcr_amplicon_size>413</pcr_amplicon_size>
		<canonical_amplicon>AATTCTCCGAATCAAAGTGACGAAGTACCAGAATTCAAAATATTCAATGGTTTGAAAGGGGGGTTCTGACCAAAATGCTTTGTAGTTTTTGCATTAACATATTCCCAAAATTATGTTTTCCATAACAACGAGATTTTTCTGTTCTCTTCATTGAGTTTTTCATCAAATAATCCAGATTTTTGTGAAAATACAGAAAAAAAACGACCAGAAACGGCGAAAAGTCGCATGAAAAAACAGCGCACACAGTGGCCGTGGAGTAGGATTCCCGCGGCCCTCTTGGAAGAGAAATGAGAGCGCTTGCAATTTCGACAGCGTTTTTCAGAGAATTCAAAATCTACTGAAATTTTTCGAAGTGATATTTCAAAAATACACGACGCTGGGAGCATTTTAATGCAAAAAGTACACAAATAATC</canonical_amplicon>
		<polymorphic_amplicon>AATTCTCCGAATCAAAGTGACGAAGTACCAGAATTCAAAATATTCAATGGTTTGAAAGGGGGGTTCTGACCAAAATGCTTTGTAGTTTTTGCATTAACATWTTCCCAAAATTATGTTTTCCATAACAACGAGATTTTTCTGTTCTCTTCATTGAGTTTTTCATCAAATAATCCAGATTTTTGTGAAAATACAGAAAAAAAACGACCAGAAACGGCGAAAAGTCGCATGAAAAAACAGCGCACACAGTGGCCGTGGAGTAGGATTCCCGCGGCCCTCTTGGAAGAGAAATGAGAGCGCTTGCAATTTCGACAGCGTTTTTCAGAGAATTCAAAATCTACTGAAATTTTTCGAAGTGATATTTCAAAAATACACGACGCTGGGAGCATTTTAATGCAAAAAGTACACAAATAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31736</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>62414</contig_pos>
        <strand>+</strand>
        <context>CAAAACCAGG[A/T]AGAAAAACCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAGGAAAACATACTTTGCCCATCATAAGCTGAATATCATCAAAACCAGG</left_flank>
        <right_flank>AGAAAAACCAAGATTGTTCCAAAGACCGGACTGTCCGCCAGATACTGTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTGTGTCTCTGGCATCGAATTGAATTTGGCTTCCGAATAAAGTCGAATACAGTAACCATTTCTTACTCTTCCTGCTCGTCCTGATCGCTGCTCTGCGTTGCTTCTAGCAATGGGTTTAACAGATAGCGTACTCAGTTTAGCTTCGTGATTGTACGACTTCTCTTTTACTTTACCAGTATCTACAACAAAGATGACGTCTTCAATGGTGATAGATGCTTCTGCAATGTTGGTTGCAAGAATCTGAATAACATATTTTAAACTGATATGAACCACGGTTTAAGGAACTTACAATCTTTCGAATATCACTGGTAACTGGTTTGAAGACGTCCGAATGATTGATACTATGCATCTGTGAATGAAGCGGAATAACGGATACATGTTTCATATTCTTTAAACCAAGCTTCCATTTGTCGATCTATAAATTTATCTATTTAGTTATTTTCTTAATTAGGAAAACATACTTTGCCCATCATAAGCTGAATATCATCAAAACCAGGTAGAAAAACCAAGATTGTTCCAAAGACCGGACTGTCCGCCAGATACTGTATGACGTGATCCAGAAGATGGTGATCGATAGAGTTCTCAAAGTCTGTTCCATAAAACATGTCATATTTTTCAGCGAAGCGAAGCTTGGCGAAATCGATACGTTCAACTAATTTATCCATATCTGTATCATAGTGTGACGTTCTTTGTGGAATCACAGATTTGAGCTCTGAACGGAATCGCTGCTCCAGCATCTGCGATATACGCTGCTTCTCCTGAAAAGAATCAAATATTAGGATCCGAAAATTGTTAATTATGAACTCACTCCAAATTTACCGAAATCGTCAGTAGAAAACTTTGCAAGGCCACTGGACGCAGTTGACGGCGTGTTGGTTTTTTCGATAGAGGTTGGAGATGCATCCGCAAATAGTTCTTGGGTGATTTGGACACTTTCAGAACACAGTGTAGTTGGCTCAGGAATTGCAAGACGAGAAGTTGAATGAGTTTCATCTAGA</canonical>
            <polymorphic>ATTTGTGTCTCTGGCATCGAATTGAATTTGGCTTCCGAATAAAGTCGAATACAGTAACCATTTCTTACTCTTCCTGCTCGTCCTGATCGCTGCTCTGCGTTGCTTCTAGCAATGGGTTTAACAGATAGCGTACTCAGTTTAGCTTCGTGATTGTACGACTTCTCTTTTACTTTACCAGTATCTACAACAAAGATGACGTCTTCAATGGTGATAGATGCTTCTGCAATGTTGGTTGCAAGAATCTGAATAACATATTTTAAACTGATATGAACCACGGTTTAAGGAACTTACAATCTTTCGAATATCACTGGTAACTGGTTTGAAGACGTCCGAATGATTGATACTATGCATCTGTGAATGAAGCGGAATAACGGATACATGTTTCATATTCTTTAAACCAAGCTTCCATTTGTCGATCTATAAATTTATCTATTTAGTTATTTTCTTAATTAGGAAAACATACTTTGCCCATCATAAGCTGAATATCATCAAAACCAGGWAGAAAAACCAAGATTGTTCCAAAGACCGGACTGTCCGCCAGATACTGTATGACGTGATCCAGAAGATGGTGATCGATAGAGTTCTCAAAGTCTGTTCCATAAAACATGTCATATTTTTCAGCGAAGCGAAGCTTGGCGAAATCGATACGTTCAACTAATTTATCCATATCTGTATCATAGTGTGACGTTCTTTGTGGAATCACAGATTTGAGCTCTGAACGGAATCGCTGCTCCAGCATCTGCGATATACGCTGCTTCTCCTGAAAAGAATCAAATATTAGGATCCGAAAATTGTTAATTATGAACTCACTCCAAATTTACCGAAATCGTCAGTAGAAAACTTTGCAAGGCCACTGGACGCAGTTGACGGCGTGTTGGTTTTTTCGATAGAGGTTGGAGATGCATCCGCAAATAGTTCTTGGGTGATTTGGACACTTTCAGAACACAGTGTAGTTGGCTCAGGAATTGCAAGACGAGAAGTTGAATGAGTTTCATCTAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACCWGGT</site>
                <isoschizomers>
                    <enzyme>MabI</enzyme>
                    <enzyme>SexAI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGATACTATGCATCTGTGAATG</pcr_primer_p1>
		<pcr_primer_p2>AGAACTCTATCGATCACCATCTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTGATACTATGCATCTGTGAATGAAGCGGAATAACGGATACATGTTTCATATTCTTTAAACCAAGCTTCCATTTGTCGATCTATAAATTTATCTATTTAGTTATTTTCTTAATTAGGAAAACATACTTTGCCCATCATAAGCTGAATATCATCAAAACCAGGTAGAAAAACCAAGATTGTTCCAAAGACCGGACTGTCCGCCAGATACTGTATGACGTGATCCAGAAGATGGTGATCGATAGAGTTCT</canonical_amplicon>
		<polymorphic_amplicon>TTGATACTATGCATCTGTGAATGAAGCGGAATAACGGATACATGTTTCATATTCTTTAAACCAAGCTTCCATTTGTCGATCTATAAATTTATCTATTTAGTTATTTTCTTAATTAGGAAAACATACTTTGCCCATCATAAGCTGAATATCATCAAAACCAGGWAGAAAAACCAAGATTGTTCCAAAGACCGGACTGTCCGCCAGATACTGTATGACGTGATCCAGAAGATGGTGATCGATAGAGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31737</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>94505</contig_pos>
        <strand>+</strand>
        <context>CTTTTCATAG[G/T]TTTTTTTCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTGAATACTTTTGAATAGTTCGCAAAGTCACTCTCACTACTTTTCATAG</left_flank>
        <right_flank>TTTTTTTCGGTATCTAAATTCCGAAAATTGAAAATTATGTTCGAGTTCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCTATATCCATTCACCGAACGATTAAGCAGAGATAATTTGAACAACTAAATATTTCATTGAAAAAAAACGGACAGGGTTTTTATTATTATTTGCGGGGGCGACGGATCAAATATATCTTTTGGTGGTCATATGGCACGTCATCTATGAATGAGAACGGTGGGAAAATTCAACTTTCGAAGGATGAGTCGACCGTATTTTGTGTTTGCTGTGTTGTTTCGAGTGTATTGTCTGATTCATTCGGATTTCGAAGTAACAAACCACATGGCAAGAAAAGGGGAAGGAGGGCCGAAAAGGGATGGCAATGTGGGTTAATTGGATAATTAGTGTTTAATCGAATGAACTTTCATTGTCCAAACACTTCTCAAAATAATTTATCTTTTTTCCCAGATTAGAGAGAACAATTGCTAGGATTTTTGGCAAAAATTTAATTTTTTCAAAGAATATTTTTTGAATACTTTTGAATAGTTCGCAAAGTCACTCTCACTACTTTTCATAGTTTTTTTTCGGTATCTAAATTCCGAAAATTGAAAATTATGTTCGAGTTCCAATAGTTTTCAATTCGGGAATCGTGAAACTCAACCTTTCGGTTGAGCTTCTTTTTTCAAAACTTTCAAAGTTGAGAAAGTCAGAACTTTGAAAAATCTGTAAGTCAAAAACACCAGAAATCGGAAAATTTGAAATTCGGAAAATGAGACATTTCTGTGTTCATAACTCTTTAATTTGAGAATTCAGCCTATCGAAATATTTTGGAAATTTAGAAAATTTAAGTTCCGATGTTGAAAAACTCAATGAGTTGGGAAATCTCGAGTTTAAAATTTCAGAAAAGTTGTAAAAACTTTTCTGAATTATGAAGTTTTCAAATTAAATTAAATCCAAATCTGCAAAATTTGGACTTCCGAAACTTCTTTGGGTTTCTGAATCTCCGGACGTAGATTTTCCAATTTTCCGAAGTTCCGATATTTCGATTTCCAAATATTTGAATTCACTAATTTTTCAA</canonical>
            <polymorphic>ATCCTATATCCATTCACCGAACGATTAAGCAGAGATAATTTGAACAACTAAATATTTCATTGAAAAAAAACGGACAGGGTTTTTATTATTATTTGCGGGGGCGACGGATCAAATATATCTTTTGGTGGTCATATGGCACGTCATCTATGAATGAGAACGGTGGGAAAATTCAACTTTCGAAGGATGAGTCGACCGTATTTTGTGTTTGCTGTGTTGTTTCGAGTGTATTGTCTGATTCATTCGGATTTCGAAGTAACAAACCACATGGCAAGAAAAGGGGAAGGAGGGCCGAAAAGGGATGGCAATGTGGGTTAATTGGATAATTAGTGTTTAATCGAATGAACTTTCATTGTCCAAACACTTCTCAAAATAATTTATCTTTTTTCCCAGATTAGAGAGAACAATTGCTAGGATTTTTGGCAAAAATTTAATTTTTTCAAAGAATATTTTTTGAATACTTTTGAATAGTTCGCAAAGTCACTCTCACTACTTTTCATAGKTTTTTTTCGGTATCTAAATTCCGAAAATTGAAAATTATGTTCGAGTTCCAATAGTTTTCAATTCGGGAATCGTGAAACTCAACCTTTCGGTTGAGCTTCTTTTTTCAAAACTTTCAAAGTTGAGAAAGTCAGAACTTTGAAAAATCTGTAAGTCAAAAACACCAGAAATCGGAAAATTTGAAATTCGGAAAATGAGACATTTCTGTGTTCATAACTCTTTAATTTGAGAATTCAGCCTATCGAAATATTTTGGAAATTTAGAAAATTTAAGTTCCGATGTTGAAAAACTCAATGAGTTGGGAAATCTCGAGTTTAAAATTTCAGAAAAGTTGTAAAAACTTTTCTGAATTATGAAGTTTTCAAATTAAATTAAATCCAAATCTGCAAAATTTGGACTTCCGAAACTTCTTTGGGTTTCTGAATCTCCGGACGTAGATTTTCCAATTTTCCGAAGTTCCGATATTTCGATTTCCAAATATTTGAATTCACTAATTTTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGAGAGAACAATTGCTAGGAT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAGTTCTGACTTTCTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAGAGAGAACAATTGCTAGGATTTTTGGCAAAAATTTAATTTTTTCAAAGAATATTTTTTGAATACTTTTGAATAGTTCGCAAAGTCACTCTCACTACTTTTCATAGTTTTTTTTCGGTATCTAAATTCCGAAAATTGAAAATTATGTTCGAGTTCCAATAGTTTTCAATTCGGGAATCGTGAAACTCAACCTTTCGGTTGAGCTTCTTTTTTCAAAACTTTCAAAGTTGAGAAAGTCAGAACTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>TTAGAGAGAACAATTGCTAGGATTTTTGGCAAAAATTTAATTTTTTCAAAGAATATTTTTTGAATACTTTTGAATAGTTCGCAAAGTCACTCTCACTACTTTTCATAGKTTTTTTTCGGTATCTAAATTCCGAAAATTGAAAATTATGTTCGAGTTCCAATAGTTTTCAATTCGGGAATCGTGAAACTCAACCTTTCGGTTGAGCTTCTTTTTTCAAAACTTTCAAAGTTGAGAAAGTCAGAACTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31738</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>108291</contig_pos>
        <strand>+</strand>
        <context>TCAGAATCCC[A/T]GCATGTCGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTACAGTAATCCAAAGTAAATCAGAATCAAAAAACATTATTCAGAATCCC</left_flank>
        <right_flank>GCATGTCGACTACTTTCATTAACTTTTTCCTCATTTTACATTCAGATCTG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGGAGACCTTCTGATATAGGTTTTATTGCAAGCTTACCCTGTGACTGAAAATAAATAGTTAAAAATATTTTCTTATTCACCCTCAATCTCTCAGAATTTGTATATTCTGAATTCAAAAAAGACAAGAAGACAGTAATAGATTTAAAAAAAAGGAAGACAGAAGAAAATTCATTATCGTGATGCCAGTCTCAAAACAAAACTGGGAGAAAAACGCAGGTCGCCATCGTGGCAAGTTCCGGAACGAAAAATACCGTAGCCTGATTTTTTTTTTGGAAATTCCGAATGACATTCTTGGTTTTTCGCAGATTTTTTATTACCTTCCTGCAATTTTTTCTTGATGTATGAAAAAATATTTGAAAACGAAAAGGATTACTGTAGGGAAAAATATTTGAAAACGAAAAGGATAGAAATTCGACAATAATCTTGATTTTAGCAGACAATCGAAGATTACAGTAATCCAAAGTAAATCAGAATCAAAAAACATTATTCAGAATCCCTGCATGTCGACTACTTTCATTAACTTTTTCCTCATTTTACATTCAGATCTGATCTGCGGAGGGTATATAAGCTGGAGAAATCGATAGGAAATCAGAGTCCTAATGACGATTATAGAACAGCTGGGATGGATCAAGGAAGAGGGAACTTCCGATTATTCTACGAAGACGACGTTCAATTGGAATCCTCGAATGCGAAGCAAAACGAGGATCGCAGTACTCTTTCACTGCTGGGAAGCTATAAAATGAGATTATGAATAAAATGAAATAACAATAATAAGCGAAAGCGTAGCTCCCTAGCAATAAAAAAGTACATTTCCCTACAGTAATCCTTTTGATTTTTGATCATTTTTCCCTACAGTAATCCTTTTCATTATCGATTTATTTTCCCTACAGTAATCCTTTGGTTTCGATTATTTTCCCCTACAGTACAATTTTTCCAATATTTTCCCCTACAGTATTCATTTGGATTTTTGATCATTTTTCCTTGCAGTGATTCTTTTC</canonical>
            <polymorphic>GATGGAGACCTTCTGATATAGGTTTTATTGCAAGCTTACCCTGTGACTGAAAATAAATAGTTAAAAATATTTTCTTATTCACCCTCAATCTCTCAGAATTTGTATATTCTGAATTCAAAAAAGACAAGAAGACAGTAATAGATTTAAAAAAAAGGAAGACAGAAGAAAATTCATTATCGTGATGCCAGTCTCAAAACAAAACTGGGAGAAAAACGCAGGTCGCCATCGTGGCAAGTTCCGGAACGAAAAATACCGTAGCCTGATTTTTTTTTTGGAAATTCCGAATGACATTCTTGGTTTTTCGCAGATTTTTTATTACCTTCCTGCAATTTTTTCTTGATGTATGAAAAAATATTTGAAAACGAAAAGGATTACTGTAGGGAAAAATATTTGAAAACGAAAAGGATAGAAATTCGACAATAATCTTGATTTTAGCAGACAATCGAAGATTACAGTAATCCAAAGTAAATCAGAATCAAAAAACATTATTCAGAATCCCWGCATGTCGACTACTTTCATTAACTTTTTCCTCATTTTACATTCAGATCTGATCTGCGGAGGGTATATAAGCTGGAGAAATCGATAGGAAATCAGAGTCCTAATGACGATTATAGAACAGCTGGGATGGATCAAGGAAGAGGGAACTTCCGATTATTCTACGAAGACGACGTTCAATTGGAATCCTCGAATGCGAAGCAAAACGAGGATCGCAGTACTCTTTCACTGCTGGGAAGCTATAAAATGAGATTATGAATAAAATGAAATAACAATAATAAGCGAAAGCGTAGCTCCCTAGCAATAAAAAAGTACATTTCCCTACAGTAATCCTTTTGATTTTTGATCATTTTTCCCTACAGTAATCCTTTTCATTATCGATTTATTTTCCCTACAGTAATCCTTTGGTTTCGATTATTTTCCCCTACAGTACAATTTTTCCAATATTTTCCCCTACAGTATTCATTTGGATTTTTGATCATTTTTCCTTGCAGTGATTCTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>485 296 175 30 14</canonical_bands>
                <polymorphic_bands>660 296 30 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATAATCTTGATTTTAGCAGACA</pcr_primer_p1>
		<pcr_primer_p2>GTCTTCGTAGAATAATCGGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAATAATCTTGATTTTAGCAGACAATCGAAGATTACAGTAATCCAAAGTAAATCAGAATCAAAAAACATTATTCAGAATCCCTGCATGTCGACTACTTTCATTAACTTTTTCCTCATTTTACATTCAGATCTGATCTGCGGAGGGTATATAAGCTGGAGAAATCGATAGGAAATCAGAGTCCTAATGACGATTATAGAACAGCTGGGATGGATCAAGGAAGAGGGAACTTCCGATTATTCTACGAAGAC</canonical_amplicon>
		<polymorphic_amplicon>CAATAATCTTGATTTTAGCAGACAATCGAAGATTACAGTAATCCAAAGTAAATCAGAATCAAAAAACATTATTCAGAATCCCWGCATGTCGACTACTTTCATTAACTTTTTCCTCATTTTACATTCAGATCTGATCTGCGGAGGGTATATAAGCTGGAGAAATCGATAGGAAATCAGAGTCCTAATGACGATTATAGAACAGCTGGGATGGATCAAGGAAGAGGGAACTTCCGATTATTCTACGAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31739</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>164356</contig_pos>
        <strand>+</strand>
        <context>CTTTTTTTCA[A/G]AAGCAGATCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAGTACTACAAGAATCGATTTTGATTGATTTTAAATCTTCTTTTTTTCA</left_flank>
        <right_flank>AAGCAGATCAAGATGATGATGGGAAATTGAATTTAGAAGAACTTGCTAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAATTAATATTTAAGACAGACGGCCCGGTATCTCCCCAAGACCACCATAAACCTGCAGCACAACAGAAACTAAACTTGAGATCTGGTCCGAAAAGTGTGGAAAAGTTTGCTAAGGCACTAGATACCAATAACGATGGCTTTGTTGGTCCGTTGGGTAGAAATATAATATCTTTCTAAATGAATGAATTTCAGATAAAAATGAACTTCTTGCTTGGGTATCTGAATCATATCAGAAAACAGTTGACAGAGAAGCAGTGGAGAGAATGAGTGAATTGGATGAGAATGCGGATGGATTTGTATGTTCGATTTATTCTGAAACCTATTTGGAAAATATATTGATTCGCAGGTTTCATGGGAAGAATACCTCTTAGATTCATTTCCAGAAGAAGAATTGCACAATAAGGAGGAAGAAACTCTCATCGCACAAGATAGAATGTACTTCAAGCGTTAGTACTACAAGAATCGATTTTGATTGATTTTAAATCTTCTTTTTTTCAGAAGCAGATCAAGATGATGATGGGAAATTGAATTTAGAAGAACTTGCTAGTTTTCTGAATCCTGAACATCATCCTCATATGCATTCAGTTCTGATCGCAGTGACTCTGTTAGAAAAGGATCAAAATGGAGATGGAGCAATCGATGAGAAAGAATTCCTTGGAGAACTAGATGATCAGAGAGGAAGTGAATGGTATAAGGTTGAAGTTGAAAGGTTAGTTCCACTTTTACATTTCTAATTGGGCCAATATTTATTTACAGACGCATCGTCGGTGCTGTAGCGAAAACAGTGAACGTTTTTTGAATAAATACATGCGCCTTCGATACCGTATCTCGAAGTTATTTCGTTTTTGCATGTTTTCCGCACAATCAGACTTTTACTCGTTTGCTCGAGATACGGTAACGAAGGCCTATGCGCTTTCAAATAAACTTCAGCTGTAAATATAAGATTATAACGATCCTGTGATTTGACATTATTCGTTTCAGATTCCATACAGTTTATG</canonical>
            <polymorphic>TGAAATTAATATTTAAGACAGACGGCCCGGTATCTCCCCAAGACCACCATAAACCTGCAGCACAACAGAAACTAAACTTGAGATCTGGTCCGAAAAGTGTGGAAAAGTTTGCTAAGGCACTAGATACCAATAACGATGGCTTTGTTGGTCCGTTGGGTAGAAATATAATATCTTTCTAAATGAATGAATTTCAGATAAAAATGAACTTCTTGCTTGGGTATCTGAATCATATCAGAAAACAGTTGACAGAGAAGCAGTGGAGAGAATGAGTGAATTGGATGAGAATGCGGATGGATTTGTATGTTCGATTTATTCTGAAACCTATTTGGAAAATATATTGATTCGCAGGTTTCATGGGAAGAATACCTCTTAGATTCATTTCCAGAAGAAGAATTGCACAATAAGGAGGAAGAAACTCTCATCGCACAAGATAGAATGTACTTCAAGCGTTAGTACTACAAGAATCGATTTTGATTGATTTTAAATCTTCTTTTTTTCARAAGCAGATCAAGATGATGATGGGAAATTGAATTTAGAAGAACTTGCTAGTTTTCTGAATCCTGAACATCATCCTCATATGCATTCAGTTCTGATCGCAGTGACTCTGTTAGAAAAGGATCAAAATGGAGATGGAGCAATCGATGAGAAAGAATTCCTTGGAGAACTAGATGATCAGAGAGGAAGTGAATGGTATAAGGTTGAAGTTGAAAGGTTAGTTCCACTTTTACATTTCTAATTGGGCCAATATTTATTTACAGACGCATCGTCGGTGCTGTAGCGAAAACAGTGAACGTTTTTTGAATAAATACATGCGCCTTCGATACCGTATCTCGAAGTTATTTCGTTTTTGCATGTTTTCCGCACAATCAGACTTTTACTCGTTTGCTCGAGATACGGTAACGAAGGCCTATGCGCTTTCAAATAAACTTCAGCTGTAAATATAAGATTATAACGATCCTGTGATTTGACATTATTCGTTTCAGATTCCATACAGTTTATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>194 183 113 102 91 84 82 56 36 30 18 11</canonical_bands>
                <polymorphic_bands>239 194 113 102 91 84 82 36 30 18 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCAAGCGTTAGTACTACAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TTCACTTCCTCTCTGATCATCTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTTCAAGCGTTAGTACTACAAGAATCGATTTTGATTGATTTTAAATCTTCTTTTTTTCAGAAGCAGATCAAGATGATGATGGGAAATTGAATTTAGAAGAACTTGCTAGTTTTCTGAATCCTGAACATCATCCTCATATGCATTCAGTTCTGATCGCAGTGACTCTGTTAGAAAAGGATCAAAATGGAGATGGAGCAATCGATGAGAAAGAATTCCTTGGAGAACTAGATGATCAGAGAGGAAGTGAA</canonical_amplicon>
		<polymorphic_amplicon>CTTCAAGCGTTAGTACTACAAGAATCGATTTTGATTGATTTTAAATCTTCTTTTTTTCARAAGCAGATCAAGATGATGATGGGAAATTGAATTTAGAAGAACTTGCTAGTTTTCTGAATCCTGAACATCATCCTCATATGCATTCAGTTCTGATCGCAGTGACTCTGTTAGAAAAGGATCAAAATGGAGATGGAGCAATCGATGAGAAAGAATTCCTTGGAGAACTAGATGATCAGAGAGGAAGTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31740</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>164372</contig_pos>
        <strand>+</strand>
        <context>GATCAAGATG[A/G]TGATGGGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGATTTTGATTGATTTTAAATCTTCTTTTTTTCAGAAGCAGATCAAGATG</left_flank>
        <right_flank>TGATGGGAAATTGAATTTAGAAGAACTTGCTAGTTTTCTGAATCCTGAAC</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACAGACGGCCCGGTATCTCCCCAAGACCACCATAAACCTGCAGCACAACAGAAACTAAACTTGAGATCTGGTCCGAAAAGTGTGGAAAAGTTTGCTAAGGCACTAGATACCAATAACGATGGCTTTGTTGGTCCGTTGGGTAGAAATATAATATCTTTCTAAATGAATGAATTTCAGATAAAAATGAACTTCTTGCTTGGGTATCTGAATCATATCAGAAAACAGTTGACAGAGAAGCAGTGGAGAGAATGAGTGAATTGGATGAGAATGCGGATGGATTTGTATGTTCGATTTATTCTGAAACCTATTTGGAAAATATATTGATTCGCAGGTTTCATGGGAAGAATACCTCTTAGATTCATTTCCAGAAGAAGAATTGCACAATAAGGAGGAAGAAACTCTCATCGCACAAGATAGAATGTACTTCAAGCGTTAGTACTACAAGAATCGATTTTGATTGATTTTAAATCTTCTTTTTTTCAGAAGCAGATCAAGATGATGATGGGAAATTGAATTTAGAAGAACTTGCTAGTTTTCTGAATCCTGAACATCATCCTCATATGCATTCAGTTCTGATCGCAGTGACTCTGTTAGAAAAGGATCAAAATGGAGATGGAGCAATCGATGAGAAAGAATTCCTTGGAGAACTAGATGATCAGAGAGGAAGTGAATGGTATAAGGTTGAAGTTGAAAGGTTAGTTCCACTTTTACATTTCTAATTGGGCCAATATTTATTTACAGACGCATCGTCGGTGCTGTAGCGAAAACAGTGAACGTTTTTTGAATAAATACATGCGCCTTCGATACCGTATCTCGAAGTTATTTCGTTTTTGCATGTTTTCCGCACAATCAGACTTTTACTCGTTTGCTCGAGATACGGTAACGAAGGCCTATGCGCTTTCAAATAAACTTCAGCTGTAAATATAAGATTATAACGATCCTGTGATTTGACATTATTCGTTTCAGATTCCATACAGTTTATGATCATAACAAAGACGG</canonical>
            <polymorphic>GACAGACGGCCCGGTATCTCCCCAAGACCACCATAAACCTGCAGCACAACAGAAACTAAACTTGAGATCTGGTCCGAAAAGTGTGGAAAAGTTTGCTAAGGCACTAGATACCAATAACGATGGCTTTGTTGGTCCGTTGGGTAGAAATATAATATCTTTCTAAATGAATGAATTTCAGATAAAAATGAACTTCTTGCTTGGGTATCTGAATCATATCAGAAAACAGTTGACAGAGAAGCAGTGGAGAGAATGAGTGAATTGGATGAGAATGCGGATGGATTTGTATGTTCGATTTATTCTGAAACCTATTTGGAAAATATATTGATTCGCAGGTTTCATGGGAAGAATACCTCTTAGATTCATTTCCAGAAGAAGAATTGCACAATAAGGAGGAAGAAACTCTCATCGCACAAGATAGAATGTACTTCAAGCGTTAGTACTACAAGAATCGATTTTGATTGATTTTAAATCTTCTTTTTTTCAGAAGCAGATCAAGATGRTGATGGGAAATTGAATTTAGAAGAACTTGCTAGTTTTCTGAATCCTGAACATCATCCTCATATGCATTCAGTTCTGATCGCAGTGACTCTGTTAGAAAAGGATCAAAATGGAGATGGAGCAATCGATGAGAAAGAATTCCTTGGAGAACTAGATGATCAGAGAGGAAGTGAATGGTATAAGGTTGAAGTTGAAAGGTTAGTTCCACTTTTACATTTCTAATTGGGCCAATATTTATTTACAGACGCATCGTCGGTGCTGTAGCGAAAACAGTGAACGTTTTTTGAATAAATACATGCGCCTTCGATACCGTATCTCGAAGTTATTTCGTTTTTGCATGTTTTCCGCACAATCAGACTTTTACTCGTTTGCTCGAGATACGGTAACGAAGGCCTATGCGCTTTCAAATAAACTTCAGCTGTAAATATAAGATTATAACGATCCTGTGATTTGACATTATTCGTTTCAGATTCCATACAGTTTATGATCATAACAAAGACGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAATCGATTTTGATTGATTTTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTCAACTTCAACCTTATACCA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGAATCGATTTTGATTGATTTTAAATCTTCTTTTTTTCAGAAGCAGATCAAGATGATGATGGGAAATTGAATTTAGAAGAACTTGCTAGTTTTCTGAATCCTGAACATCATCCTCATATGCATTCAGTTCTGATCGCAGTGACTCTGTTAGAAAAGGATCAAAATGGAGATGGAGCAATCGATGAGAAAGAATTCCTTGGAGAACTAGATGATCAGAGAGGAAGTGAATGGTATAAGGTTGAAGTTGAAAG</canonical_amplicon>
		<polymorphic_amplicon>AGAATCGATTTTGATTGATTTTAAATCTTCTTTTTTTCAGAAGCAGATCAAGATGRTGATGGGAAATTGAATTTAGAAGAACTTGCTAGTTTTCTGAATCCTGAACATCATCCTCATATGCATTCAGTTCTGATCGCAGTGACTCTGTTAGAAAAGGATCAAAATGGAGATGGAGCAATCGATGAGAAAGAATTCCTTGGAGAACTAGATGATCAGAGAGGAAGTGAATGGTATAAGGTTGAAGTTGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31741</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>166447</contig_pos>
        <strand>+</strand>
        <context>GAACTGAAAG[G/T]GGGACTCTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAG</left_flank>
        <right_flank>GGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGTCTATAGCCTGGGAGCGTACGAAGAAAGCGCATGCGTGCGAAGCAAGAAAGGAGCAAATGGAAGAATAGAAATTTCAGACTCGCGGACAAAGTAGGCGGCGTCTGGTAGTCATATAATCAGAAGAGGAATACATTATTTGGGTAGATAAAGGGAGGAAGAATAATGACTCAGTAACACTAGTTCGCGGATGGAAAGATATTTGGGAGGAGCATCACGTATTAAACGAAGGCAATTTAACGAAAGACGAAAAAAGCGATTTCAGAATAAAAGTTATATTGGGTCAATTATGAAAAAAAATGATTCTTTGTGTTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACCAAAAGCCTGTTCGAAAGTTCATCATTGTTACTTCTGATGAAACTGAAAGAGTGAAATGGATTGAGATTATGGGCGACAATTTTGGCAGTAAAATTGCAGGAAACGAAATGTTTACTTCTTCTGACGGACAGCGTCGCTT</canonical>
            <polymorphic>GAGTCTATAGCCTGGGAGCGTACGAAGAAAGCGCATGCGTGCGAAGCAAGAAAGGAGCAAATGGAAGAATAGAAATTTCAGACTCGCGGACAAAGTAGGCGGCGTCTGGTAGTCATATAATCAGAAGAGGAATACATTATTTGGGTAGATAAAGGGAGGAAGAATAATGACTCAGTAACACTAGTTCGCGGATGGAAAGATATTTGGGAGGAGCATCACGTATTAAACGAAGGCAATTTAACGAAAGACGAAAAAAGCGATTTCAGAATAAAAGTTATATTGGGTCAATTATGAAAAAAAATGATTCTTTGTGTTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGKGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACCAAAAGCCTGTTCGAAAGTTCATCATTGTTACTTCTGATGAAACTGAAAGAGTGAAATGGATTGAGATTATGGGCGACAATTTTGGCAGTAAAATTGCAGGAAACGAAATGTTTACTTCTTCTGACGGACAGCGTCGCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>183 139 117 106 95 86 57 56 41 38 37 21 14 8 2</canonical_bands>
                <polymorphic_bands>240 139 117 106 95 86 56 41 38 37 21 14 8 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTTGTGTTTTTCAAACCTA</pcr_primer_p1>
		<pcr_primer_p2>TTACTTCGAGAACATTTTGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTTGTGTTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAA</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTTGTGTTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGKGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31742</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>166558</contig_pos>
        <strand></strand>
        <context>cgaagtccct[G/C]aamaacgccr</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCT</left_flank>
        <right_flank>AAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCATATAATCAGAAGAGGAATACATTATTTGGGTAGATAAAGGGAGGAAGAATAATGACTCAGTAACACTAGTTCGCGGATGGAAAGATATTTGGGAGGAGCATCACGTATTAAACGAAGGCAATTTAACGAAAGACGAAAAAAGCGATTTCAGAATAAAAGTTATATTGGGTCAATTATGAAAAAAAATGATTCTTTGTGTTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACCAAAAGCCTGTTCGAAAGTTCATCATTGTTACTTCTGATGAAACTGAAAGAGTGAAATGGATTGAGATTATGGGCGACAATTTTGGCAGTAAAATTGCAGGAAACGAAATGTTTACTTCTTCTGACGGACAGCGTCGCTTATCCATCGCTCGTGTAATCAATGTTGACTTGAACACACTTTTTTTGCCGTCTTTATATAATAGTTAATAAAACAGCTTCATTCTTACAGAAATTACAGAAAAAAACGGCTG</canonical>
            <polymorphic>GTCATATAATCAGAAGAGGAATACATTATTTGGGTAGATAAAGGGAGGAAGAATAATGACTCAGTAACACTAGTTCGCGGATGGAAAGATATTTGGGAGGAGCATCACGTATTAAACGAAGGCAATTTAACGAAAGACGAAAAAAGCGATTTCAGAATAAAAGTTATATTGGGTCAATTATGAAAAAAAATGATTCTTTGTGTTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTSAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACCAAAAGCCTGTTCGAAAGTTCATCATTGTTACTTCTGATGAAACTGAAAGAGTGAAATGGATTGAGATTATGGGCGACAATTTTGGCAGTAAAATTGCAGGAAACGAAATGTTTACTTCTTCTGACGGACAGCGTCGCTTATCCATCGCTCGTGTAATCAATGTTGACTTGAACACACTTTTTTTGCCGTCTTTATATAATAGTTAATAAAACAGCTTCATTCTTACAGAAATTACAGAAAAAAACGGCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAAATGTTCTCGAAGTAAG</pcr_primer_p1>
		<pcr_primer_p2>GGTCACATCAATACTGACAGC</pcr_primer_p2>
		<pcr_amplicon_size>325</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACC</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTSAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31743</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>166561</contig_pos>
        <strand></strand>
        <context>agtccctsaa[A/C]aacgccraca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAA</left_flank>
        <right_flank>AACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATAATCAGAAGAGGAATACATTATTTGGGTAGATAAAGGGAGGAAGAATAATGACTCAGTAACACTAGTTCGCGGATGGAAAGATATTTGGGAGGAGCATCACGTATTAAACGAAGGCAATTTAACGAAAGACGAAAAAAGCGATTTCAGAATAAAAGTTATATTGGGTCAATTATGAAAAAAAATGATTCTTTGTGTTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACCAAAAGCCTGTTCGAAAGTTCATCATTGTTACTTCTGATGAAACTGAAAGAGTGAAATGGATTGAGATTATGGGCGACAATTTTGGCAGTAAAATTGCAGGAAACGAAATGTTTACTTCTTCTGACGGACAGCGTCGCTTATCCATCGCTCGTGTAATCAATGTTGACTTGAACACACTTTTTTTGCCGTCTTTATATAATAGTTAATAAAACAGCTTCATTCTTACAGAAATTACAGAAAAAAACGGCTGAAA</canonical>
            <polymorphic>ATATAATCAGAAGAGGAATACATTATTTGGGTAGATAAAGGGAGGAAGAATAATGACTCAGTAACACTAGTTCGCGGATGGAAAGATATTTGGGAGGAGCATCACGTATTAAACGAAGGCAATTTAACGAAAGACGAAAAAAGCGATTTCAGAATAAAAGTTATATTGGGTCAATTATGAAAAAAAATGATTCTTTGTGTTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAMAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACCAAAAGCCTGTTCGAAAGTTCATCATTGTTACTTCTGATGAAACTGAAAGAGTGAAATGGATTGAGATTATGGGCGACAATTTTGGCAGTAAAATTGCAGGAAACGAAATGTTTACTTCTTCTGACGGACAGCGTCGCTTATCCATCGCTCGTGTAATCAATGTTGACTTGAACACACTTTTTTTGCCGTCTTTATATAATAGTTAATAAAACAGCTTCATTCTTACAGAAATTACAGAAAAAAACGGCTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAAATGTTCTCGAAGTAAG</pcr_primer_p1>
		<pcr_primer_p2>GGTCACATCAATACTGACAGC</pcr_primer_p2>
		<pcr_amplicon_size>325</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACC</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAMAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31744</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>166568</contig_pos>
        <strand></strand>
        <context>saamaacgcc[A/G]acaaaattga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCC</left_flank>
        <right_flank>ACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAAGAGGAATACATTATTTGGGTAGATAAAGGGAGGAAGAATAATGACTCAGTAACACTAGTTCGCGGATGGAAAGATATTTGGGAGGAGCATCACGTATTAAACGAAGGCAATTTAACGAAAGACGAAAAAAGCGATTTCAGAATAAAAGTTATATTGGGTCAATTATGAAAAAAAATGATTCTTTGTGTTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACCAAAAGCCTGTTCGAAAGTTCATCATTGTTACTTCTGATGAAACTGAAAGAGTGAAATGGATTGAGATTATGGGCGACAATTTTGGCAGTAAAATTGCAGGAAACGAAATGTTTACTTCTTCTGACGGACAGCGTCGCTTATCCATCGCTCGTGTAATCAATGTTGACTTGAACACACTTTTTTTGCCGTCTTTATATAATAGTTAATAAAACAGCTTCATTCTTACAGAAATTACAGAAAAAAACGGCTGAAAATGGCGA</canonical>
            <polymorphic>CAGAAGAGGAATACATTATTTGGGTAGATAAAGGGAGGAAGAATAATGACTCAGTAACACTAGTTCGCGGATGGAAAGATATTTGGGAGGAGCATCACGTATTAAACGAAGGCAATTTAACGAAAGACGAAAAAAGCGATTTCAGAATAAAAGTTATATTGGGTCAATTATGAAAAAAAATGATTCTTTGTGTTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCRACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACCAAAAGCCTGTTCGAAAGTTCATCATTGTTACTTCTGATGAAACTGAAAGAGTGAAATGGATTGAGATTATGGGCGACAATTTTGGCAGTAAAATTGCAGGAAACGAAATGTTTACTTCTTCTGACGGACAGCGTCGCTTATCCATCGCTCGTGTAATCAATGTTGACTTGAACACACTTTTTTTGCCGTCTTTATATAATAGTTAATAAAACAGCTTCATTCTTACAGAAATTACAGAAAAAAACGGCTGAAAATGGCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAAATGTTCTCGAAGTAAG</pcr_primer_p1>
		<pcr_primer_p2>GGTCACATCAATACTGACAGC</pcr_primer_p2>
		<pcr_amplicon_size>325</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACC</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCRACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31745</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>166664</contig_pos>
        <strand></strand>
        <context>caattttcgc[C/T]attttcakcc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGC</left_flank>
        <right_flank>ATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTAT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGTATTAAACGAAGGCAATTTAACGAAAGACGAAAAAAGCGATTTCAGAATAAAAGTTATATTGGGTCAATTATGAAAAAAAATGATTCTTTGTGTTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACCAAAAGCCTGTTCGAAAGTTCATCATTGTTACTTCTGATGAAACTGAAAGAGTGAAATGGATTGAGATTATGGGCGACAATTTTGGCAGTAAAATTGCAGGAAACGAAATGTTTACTTCTTCTGACGGACAGCGTCGCTTATCCATCGCTCGTGTAATCAATGTTGACTTGAACACACTTTTTTTGCCGTCTTTATATAATAGTTAATAAAACAGCTTCATTCTTACAGAAATTACAGAAAAAAACGGCTGAAAATGGCGAAAATTGGATCGAAAAATGTGTGGCCGCGTGGCCGAACTCAAGATTTTTATAGTCCCTCGTTGACGAGAACTGAGCGGCGCTTCAATTTTGTCGGCG</canonical>
            <polymorphic>ACGTATTAAACGAAGGCAATTTAACGAAAGACGAAAAAAGCGATTTCAGAATAAAAGTTATATTGGGTCAATTATGAAAAAAAATGATTCTTTGTGTTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCYATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACCAAAAGCCTGTTCGAAAGTTCATCATTGTTACTTCTGATGAAACTGAAAGAGTGAAATGGATTGAGATTATGGGCGACAATTTTGGCAGTAAAATTGCAGGAAACGAAATGTTTACTTCTTCTGACGGACAGCGTCGCTTATCCATCGCTCGTGTAATCAATGTTGACTTGAACACACTTTTTTTGCCGTCTTTATATAATAGTTAATAAAACAGCTTCATTCTTACAGAAATTACAGAAAAAAACGGCTGAAAATGGCGAAAATTGGATCGAAAAATGTGTGGCCGCGTGGCCGAACTCAAGATTTTTATAGTCCCTCGTTGACGAGAACTGAGCGGCGCTTCAATTTTGTCGGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAAATGTTCTCGAAGTAAG</pcr_primer_p1>
		<pcr_primer_p2>GGTCACATCAATACTGACAGC</pcr_primer_p2>
		<pcr_amplicon_size>325</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACC</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCYATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31746</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>166672</contig_pos>
        <strand></strand>
        <context>gcyattttca[T/G]ccgttttttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCA</left_flank>
        <right_flank>CCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGAAGGCAATTTAACGAAAGACGAAAAAAGCGATTTCAGAATAAAAGTTATATTGGGTCAATTATGAAAAAAAATGATTCTTTGTGTTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACCAAAAGCCTGTTCGAAAGTTCATCATTGTTACTTCTGATGAAACTGAAAGAGTGAAATGGATTGAGATTATGGGCGACAATTTTGGCAGTAAAATTGCAGGAAACGAAATGTTTACTTCTTCTGACGGACAGCGTCGCTTATCCATCGCTCGTGTAATCAATGTTGACTTGAACACACTTTTTTTGCCGTCTTTATATAATAGTTAATAAAACAGCTTCATTCTTACAGAAATTACAGAAAAAAACGGCTGAAAATGGCGAAAATTGGATCGAAAAATGTGTGGCCGCGTGGCCGAACTCAAGATTTTTATAGTCCCTCGTTGACGAGAACTGAGCGGCGCTTCAATTTTGTCGGCGTTTTTCAG</canonical>
            <polymorphic>AACGAAGGCAATTTAACGAAAGACGAAAAAAGCGATTTCAGAATAAAAGTTATATTGGGTCAATTATGAAAAAAAATGATTCTTTGTGTTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCAKCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACCAAAAGCCTGTTCGAAAGTTCATCATTGTTACTTCTGATGAAACTGAAAGAGTGAAATGGATTGAGATTATGGGCGACAATTTTGGCAGTAAAATTGCAGGAAACGAAATGTTTACTTCTTCTGACGGACAGCGTCGCTTATCCATCGCTCGTGTAATCAATGTTGACTTGAACACACTTTTTTTGCCGTCTTTATATAATAGTTAATAAAACAGCTTCATTCTTACAGAAATTACAGAAAAAAACGGCTGAAAATGGCGAAAATTGGATCGAAAAATGTGTGGCCGCGTGGCCGAACTCAAGATTTTTATAGTCCCTCGTTGACGAGAACTGAGCGGCGCTTCAATTTTGTCGGCGTTTTTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAAATGTTCTCGAAGTAAG</pcr_primer_p1>
		<pcr_primer_p2>GGTCACATCAATACTGACAGC</pcr_primer_p2>
		<pcr_amplicon_size>325</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACC</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCAKCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31747</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>166742</contig_pos>
        <strand>+</strand>
        <context>CGGCAAAAAA[A/G]CTGTGTTCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAA</left_flank>
        <right_flank>CTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAATGATTCTTTGTGTTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACCAAAAGCCTGTTCGAAAGTTCATCATTGTTACTTCTGATGAAACTGAAAGAGTGAAATGGATTGAGATTATGGGCGACAATTTTGGCAGTAAAATTGCAGGAAACGAAATGTTTACTTCTTCTGACGGACAGCGTCGCTTATCCATCGCTCGTGTAATCAATGTTGACTTGAACACACTTTTTTTGCCGTCTTTATATAATAGTTAATAAAACAGCTTCATTCTTACAGAAATTACAGAAAAAAACGGCTGAAAATGGCGAAAATTGGATCGAAAAATGTGTGGCCGCGTGGCCGAACTCAAGATTTTTATAGTCCCTCGTTGACGAGAACTGAGCGGCGCTTCAATTTTGTCGGCGTTTTTCAGGGACTTCGACTTTTTTTCTGAATTTTTTCGTATTAGTATTATAAAAATACCTTACTTCGAGAACATCTTG</canonical>
            <polymorphic>AAAAAATGATTCTTTGTGTTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAARCTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACCAAAAGCCTGTTCGAAAGTTCATCATTGTTACTTCTGATGAAACTGAAAGAGTGAAATGGATTGAGATTATGGGCGACAATTTTGGCAGTAAAATTGCAGGAAACGAAATGTTTACTTCTTCTGACGGACAGCGTCGCTTATCCATCGCTCGTGTAATCAATGTTGACTTGAACACACTTTTTTTGCCGTCTTTATATAATAGTTAATAAAACAGCTTCATTCTTACAGAAATTACAGAAAAAAACGGCTGAAAATGGCGAAAATTGGATCGAAAAATGTGTGGCCGCGTGGCCGAACTCAAGATTTTTATAGTCCCTCGTTGACGAGAACTGAGCGGCGCTTCAATTTTGTCGGCGTTTTTCAGGGACTTCGACTTTTTTTCTGAATTTTTTCGTATTAGTATTATAAAAATACCTTACTTCGAGAACATCTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAAATGTTCTCGAAGTAAG</pcr_primer_p1>
		<pcr_primer_p2>GGTCACATCAATACTGACAGC</pcr_primer_p2>
		<pcr_amplicon_size>325</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACC</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAARCTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31748</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>166760</contig_pos>
        <strand>+</strand>
        <context>CAAGTCAACA[C/T]TGATTACACG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACA</left_flank>
        <right_flank>TGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACCAAAAGCCTGTTCGAAAGTTCATCATTGTTACTTCTGATGAAACTGAAAGAGTGAAATGGATTGAGATTATGGGCGACAATTTTGGCAGTAAAATTGCAGGAAACGAAATGTTTACTTCTTCTGACGGACAGCGTCGCTTATCCATCGCTCGTGTAATCAATGTTGACTTGAACACACTTTTTTTGCCGTCTTTATATAATAGTTAATAAAACAGCTTCATTCTTACAGAAATTACAGAAAAAAACGGCTGAAAATGGCGAAAATTGGATCGAAAAATGTGTGGCCGCGTGGCCGAACTCAAGATTTTTATAGTCCCTCGTTGACGAGAACTGAGCGGCGCTTCAATTTTGTCGGCGTTTTTCAGGGACTTCGACTTTTTTTCTGAATTTTTTCGTATTAGTATTATAAAAATACCTTACTTCGAGAACATCTTGAAACAAAAAAATCAAATA</canonical>
            <polymorphic>TTTTTCAAACCTATTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACAYTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACCAAAAGCCTGTTCGAAAGTTCATCATTGTTACTTCTGATGAAACTGAAAGAGTGAAATGGATTGAGATTATGGGCGACAATTTTGGCAGTAAAATTGCAGGAAACGAAATGTTTACTTCTTCTGACGGACAGCGTCGCTTATCCATCGCTCGTGTAATCAATGTTGACTTGAACACACTTTTTTTGCCGTCTTTATATAATAGTTAATAAAACAGCTTCATTCTTACAGAAATTACAGAAAAAAACGGCTGAAAATGGCGAAAATTGGATCGAAAAATGTGTGGCCGCGTGGCCGAACTCAAGATTTTTATAGTCCCTCGTTGACGAGAACTGAGCGGCGCTTCAATTTTGTCGGCGTTTTTCAGGGACTTCGACTTTTTTTCTGAATTTTTTCGTATTAGTATTATAAAAATACCTTACTTCGAGAACATCTTGAAACAAAAAAATCAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAAATGTTCTCGAAGTAAG</pcr_primer_p1>
		<pcr_primer_p2>GCTTTTGGTCACATCAATACT</pcr_primer_p2>
		<pcr_amplicon_size>331</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACCAAAAGC</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACAYTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACCAAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31749</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>166773</contig_pos>
        <strand></strand>
        <context>ATTACACGAG[C/T]GATGGAGAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAG</left_flank>
        <right_flank>GATGGAGAAGCGACGCTGTCAGTATTGATGTGACCAAAAGCCTGTTCGAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACCAAAAGCCTGTTCGAAAGTTCATCATTGTTACTTCTGATGAAACTGAAAGAGTGAAATGGATTGAGATTATGGGCGACAATTTTGGCAGTAAAATTGCAGGAAACGAAATGTTTACTTCTTCTGACGGACAGCGTCGCTTATCCATCGCTCGTGTAATCAATGTTGACTTGAACACACTTTTTTTGCCGTCTTTATATAATAGTTAATAAAACAGCTTCATTCTTACAGAAATTACAGAAAAAAACGGCTGAAAATGGCGAAAATTGGATCGAAAAATGTGTGGCCGCGTGGCCGAACTCAAGATTTTTATAGTCCCTCGTTGACGAGAACTGAGCGGCGCTTCAATTTTGTCGGCGTTTTTCAGGGACTTCGACTTTTTTTCTGAATTTTTTCGTATTAGTATTATAAAAATACCTTACTTCGAGAACATCTTGAAACAAAAAAATCAAATATAATTTTTTGGTC</canonical>
            <polymorphic>TTCATGGATGCGAAAAAATGTTTTTGATGTTTTTCAAAGCAAATCATGAATATTGACCCTATCGATGTATATATATCAATACTAAACGAAAGAAACATTTTGCACGCAGAAGATTCCACCTGAACAAAAAAATCCATGCGAGCTCTACGAAGAGCTCTCAAGAGAACTGAAAGTGGGACTCTGACCAAAAAATTATATTAGATTTTTTTGTTTCAAAATGTTCTCGAAGTAAGGTATTTTTATAATACTAATACGAAAAAATTCAGAAAAAAGTCGAAGTCCCTGAAAAACGCCAACAAAATTGAAGCGCCGCTCAGTTCTCGTCAACGAGGGACTAGAAAAATCTTGAGTTCGGCCACGCGGCCACACATTTTTCGATCCAATTTTCGCCATTTTCATCCGTTTTTTTCTGTAATTTCTGTAAGAATGAAGCTGTTTTATTAACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGYGATGGAGAAGCGACGCTGTCAGTATTGATGTGACCAAAAGCCTGTTCGAAAGTTCATCATTGTTACTTCTGATGAAACTGAAAGAGTGAAATGGATTGAGATTATGGGCGACAATTTTGGCAGTAAAATTGCAGGAAACGAAATGTTTACTTCTTCTGACGGACAGCGTCGCTTATCCATCGCTCGTGTAATCAATGTTGACTTGAACACACTTTTTTTGCCGTCTTTATATAATAGTTAATAAAACAGCTTCATTCTTACAGAAATTACAGAAAAAAACGGCTGAAAATGGCGAAAATTGGATCGAAAAATGTGTGGCCGCGTGGCCGAACTCAAGATTTTTATAGTCCCTCGTTGACGAGAACTGAGCGGCGCTTCAATTTTGTCGGCGTTTTTCAGGGACTTCGACTTTTTTTCTGAATTTTTTCGTATTAGTATTATAAAAATACCTTACTTCGAGAACATCTTGAAACAAAAAAATCAAATATAATTTTTTGGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTATTATATAAAGACGGCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTACACGAGCGATGGATAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGCGATGGAGAAGCGACGCTGTCAGTATTGATGTGACCAAAAGCCTGTTCGAAAGTTCATCATTGTTACTTCTGATGAAACTGAAAGAGTGAAATGGATTGAGATTATGGGCGACAATTTTGGCAGTAAAATTGCAGGAAACGAAATGTTTACTTCTTCTGACGGACAGCGTCGCTTATCCATCGCTCGTGTAAT</canonical_amplicon>
		<polymorphic_amplicon>AACTATTATATAAAGACGGCAAAAAAACTGTGTTCAAGTCAACATTGATTACACGAGYGATGGAGAAGCGACGCTGTCAGTATTGATGTGACCAAAAGCCTGTTCGAAAGTTCATCATTGTTACTTCTGATGAAACTGAAAGAGTGAAATGGATTGAGATTATGGGCGACAATTTTGGCAGTAAAATTGCAGGAAACGAAATGTTTACTTCTTCTGACGGACAGCGTCGCTTATCCATCGCTCGTGTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31750</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>201358</contig_pos>
        <strand>+</strand>
        <context>TCATCAATCT[A/T]CTACGCCAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCCATGCATCCATTAACAACTCGTTCGGAAAAGGAGCTGTCATCAATCT</left_flank>
        <right_flank>CTACGCCAATTCGCCAAACTCCACCCAGACCGCCCTCAAATCAGTGTTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTTATATTGATGAATCTAAAAACTCCTTCTCGAGAAGCCTTTGCGCTATCTCCGTGTGGTTCCTAGTCGTCGAAAGAATCGCGGCCAAGCAAAAAGAAGAAAGAGTACCGGGGTTTTACGACTTCATAGTTTCTTATCATTGACTGCTACCGCTTTGAAATGTTGCCATTTCAAGAAGATTGCTTAAAAATTGTTATTTAAATTGGGGTAGTAGTATAGGAAAAGAACCTCGATTGTTCTTTGTTTCAGGGTACTCGTTGTCGCCACGTTGAGGAGTTCTTAAGAAAGGAGAAACCACACAAGCATCTTGTTACTGTTATCAACAAGGTCGACTTGGTACCTACATGGGTTACAGTGAGTTTTGATTATCTGGAAACGAAATATTTATTCGCTTTTTCTCAGAGAAAATGGATTGGAGAACTTTCGAAAGAAATGCCAACAATTGCATTCCATGCATCCATTAACAACTCGTTCGGAAAAGGAGCTGTCATCAATCTACTACGCCAATTCGCCAAACTCCACCCAGACCGCCCTCAAATCAGTGTTGGTTTCATTGGATATCCAAATGTCGGAAAGTCATCTCTTGTCAACACTCTTCGCAAGAAGAAAGTTTGCAAAACAGCTCCGATTGCTGGAGAGACGAAAGTCTGGCAATACGTTATGCTGATGCGCAGAATCTATCTGATCGATTCTCCAGGAGTCGTTTATCCACAAGGAGACACAGAAACCCAGATCATTCTGAAAGGAGTTGTTCGTGTGGAGAACGTTAAAGACCCGGAAAATCACATCCAAGGAGTTCTCGATCGATGCAAACCAGAACATCTTCGCCGTCAGTATGGTATCCCGGAATTTTCTGGCGTAGATGATTTCTTGACCAAAATCGCAATCAAACAAGGTCGTCTTTTGAAAGGAGGAGATCCTGATATCGTTGCTATCGCTAAGGTTGTACTTAATGAGTTCCAAAGAGGAAAGCTTCCATATTTTGTTCCACCCCCGGG</canonical>
            <polymorphic>CCTTTATATTGATGAATCTAAAAACTCCTTCTCGAGAAGCCTTTGCGCTATCTCCGTGTGGTTCCTAGTCGTCGAAAGAATCGCGGCCAAGCAAAAAGAAGAAAGAGTACCGGGGTTTTACGACTTCATAGTTTCTTATCATTGACTGCTACCGCTTTGAAATGTTGCCATTTCAAGAAGATTGCTTAAAAATTGTTATTTAAATTGGGGTAGTAGTATAGGAAAAGAACCTCGATTGTTCTTTGTTTCAGGGTACTCGTTGTCGCCACGTTGAGGAGTTCTTAAGAAAGGAGAAACCACACAAGCATCTTGTTACTGTTATCAACAAGGTCGACTTGGTACCTACATGGGTTACAGTGAGTTTTGATTATCTGGAAACGAAATATTTATTCGCTTTTTCTCAGAGAAAATGGATTGGAGAACTTTCGAAAGAAATGCCAACAATTGCATTCCATGCATCCATTAACAACTCGTTCGGAAAAGGAGCTGTCATCAATCTWCTACGCCAATTCGCCAAACTCCACCCAGACCGCCCTCAAATCAGTGTTGGTTTCATTGGATATCCAAATGTCGGAAAGTCATCTCTTGTCAACACTCTTCGCAAGAAGAAAGTTTGCAAAACAGCTCCGATTGCTGGAGAGACGAAAGTCTGGCAATACGTTATGCTGATGCGCAGAATCTATCTGATCGATTCTCCAGGAGTCGTTTATCCACAAGGAGACACAGAAACCCAGATCATTCTGAAAGGAGTTGTTCGTGTGGAGAACGTTAAAGACCCGGAAAATCACATCCAAGGAGTTCTCGATCGATGCAAACCAGAACATCTTCGCCGTCAGTATGGTATCCCGGAATTTTCTGGCGTAGATGATTTCTTGACCAAAATCGCAATCAAACAAGGTCGTCTTTTGAAAGGAGGAGATCCTGATATCGTTGCTATCGCTAAGGTTGTACTTAATGAGTTCCAAAGAGGAAAGCTTCCATATTTTGTTCCACCCCCGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGGGTTACAGTGAGTTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>GAGTGTTGACAAGAGATGACTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATGGGTTACAGTGAGTTTTGATTATCTGGAAACGAAATATTTATTCGCTTTTTCTCAGAGAAAATGGATTGGAGAACTTTCGAAAGAAATGCCAACAATTGCATTCCATGCATCCATTAACAACTCGTTCGGAAAAGGAGCTGTCATCAATCTACTACGCCAATTCGCCAAACTCCACCCAGACCGCCCTCAAATCAGTGTTGGTTTCATTGGATATCCAAATGTCGGAAAGTCATCTCTTGTCAACACTC</canonical_amplicon>
		<polymorphic_amplicon>ATGGGTTACAGTGAGTTTTGATTATCTGGAAACGAAATATTTATTCGCTTTTTCTCAGAGAAAATGGATTGGAGAACTTTCGAAAGAAATGCCAACAATTGCATTCCATGCATCCATTAACAACTCGTTCGGAAAAGGAGCTGTCATCAATCTWCTACGCCAATTCGCCAAACTCCACCCAGACCGCCCTCAAATCAGTGTTGGTTTCATTGGATATCCAAATGTCGGAAAGTCATCTCTTGTCAACACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31751</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>223394</contig_pos>
        <strand></strand>
        <context>ttttcaacct[A/C]cctctggggt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTACCGTATTTCCTCTAATAGAAGCCCATGGCTTCTATTTTTCAACCT</left_flank>
        <right_flank>CCTCTGGGGTGGACTAATTTTGAAGAAAACGCTCAAATTAGAATGTTTTC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTAGGAATTGGACGAACTCAAACTGAAATCTTACCACTTCATCATACAACATTTTTCTTCCGTTTTTAGGAATATTTCGAATAAAAAGAGCCCGGGATGAGACTGGGAGAACCAACAAAAACTATTAGAGTTTGGGAGAAACAAAGGGAAAAAAGACGAGAAATGGCTAATTTGGGATTGCAACTTCTAGATGAATGGGCACCGATAAATGGAGGGACCAAGCGGGGAAAAATGGAAGAGAAGGCTCAACTTGTGGGTTCAAAAAGGGTGGAGCAAAGAGAGAAAAACGTCCCGGGGGTACGATTTCAGAGAATGAAAGAACACTGTTTATGTGCATGCACTTACGGATATTGAACTGGATTTTATTTATAAATCAGATTAGAGAACTGAAAAGTTAGATTTAAATTGTCTGAAAATTGAGAAATATATGTTTTTTTACTTTTCTAAAATTACCGTATTTCCTCTAATAGAAGCCCATGGCTTCTATTTTTCAACCTACCTCTGGGGTGGACTAATTTTGAAGAAAACGCTCAAATTAGAATGTTTTCGGCTTTCAACTGAACTGGAATAGTTTTCACACGACAAGAATTAGCAGAAAGGACCAGAAAACCAAAAAAAAAAGAGTATGGATAACCTAACCGGAAAGAAACATGAACAGCCAGGGTGGACTTCTATTAGAGGTGGGCTTCAAATAGAGGTGGGCTTCTATTAGAGGAAATACGGTAATATGGAGACTAGAACCTCTATAATCAAAAGATCACAAGAAATTCGATACTGAAATTTGGAAATTTCTGCAAAATTTGGACCATTTTGGTGATTCTGAATTTATAGTTGTCATCTGTTTTTGACAGCTTTTGAGTCTTCTGAACAATTATTGAATTTGTTATCTTAGTTTTCGGGAAAAAATTGTTGATTTTCAACTCTAGTAGTTGAGAACCTTTTGAAGCAGTTGTTGTGCTAAAAATTCGTTTTTTTTTCGTTTTAAGAAAAAAGTTTTT</canonical>
            <polymorphic>GTTTAGGAATTGGACGAACTCAAACTGAAATCTTACCACTTCATCATACAACATTTTTCTTCCGTTTTTAGGAATATTTCGAATAAAAAGAGCCCGGGATGAGACTGGGAGAACCAACAAAAACTATTAGAGTTTGGGAGAAACAAAGGGAAAAAAGACGAGAAATGGCTAATTTGGGATTGCAACTTCTAGATGAATGGGCACCGATAAATGGAGGGACCAAGCGGGGAAAAATGGAAGAGAAGGCTCAACTTGTGGGTTCAAAAAGGGTGGAGCAAAGAGAGAAAAACGTCCCGGGGGTACGATTTCAGAGAATGAAAGAACACTGTTTATGTGCATGCACTTACGGATATTGAACTGGATTTTATTTATAAATCAGATTAGAGAACTGAAAAGTTAGATTTAAATTGTCTGAAAATTGAGAAATATATGTTTTTTTACTTTTCTAAAATTACCGTATTTCCTCTAATAGAAGCCCATGGCTTCTATTTTTCAACCTMCCTCTGGGGTGGACTAATTTTGAAGAAAACGCTCAAATTAGAATGTTTTCGGCTTTCAACTGAACTGGAATAGTTTTCACACGACAAGAATTAGCAGAAAGGACCAGAAAACCAAAAAAAAAAGAGTATGGATAACCTAACCGGAAAGAAACATGAACAGCCAGGGTGGACTTCTATTAGAGGTGGGCTTCAAATAGAGGTGGGCTTCTATTAGAGGAAATACGGTAATATGGAGACTAGAACCTCTATAATCAAAAGATCACAAGAAATTCGATACTGAAATTTGGAAATTTCTGCAAAATTTGGACCATTTTGGTGATTCTGAATTTATAGTTGTCATCTGTTTTTGACAGCTTTTGAGTCTTCTGAACAATTATTGAATTTGTTATCTTAGTTTTCGGGAAAAAATTGTTGATTTTCAACTCTAGTAGTTGAGAACCTTTTGAAGCAGTTGTTGTGCTAAAAATTCGTTTTTTTTTCGTTTTAAGAAAAAAGTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGATTAGAGAACTGAAAAGTTAGA</pcr_primer_p1>
		<pcr_primer_p2>TTCAGTATCGAATTTCTTGTGAT</pcr_primer_p2>
		<pcr_amplicon_size>406</pcr_amplicon_size>
		<canonical_amplicon>TCAGATTAGAGAACTGAAAAGTTAGATTTAAATTGTCTGAAAATTGAGAAATATATGTTTTTTTACTTTTCTAAAATTACCGTATTTCCTCTAATAGAAGCCCATGGCTTCTATTTTTCAACCTACCTCTGGGGTGGACTAATTTTGAAGAAAACGCTCAAATTAGAATGTTTTCGGCTTTCAACTGAACTGGAATAGTTTTCACACGACAAGAATTAGCAGAAAGGACCAGAAAACCAAAAAAAAAAGAGTATGGATAACCTAACCGGAAAGAAACATGAACAGCCAGGGTGGACTTCTATTAGAGGTGGGCTTCAAATAGAGGTGGGCTTCTATTAGAGGAAATACGGTAATATGGAGACTAGAACCTCTATAATCAAAAGATCACAAGAAATTCGATACTGAA</canonical_amplicon>
		<polymorphic_amplicon>TCAGATTAGAGAACTGAAAAGTTAGATTTAAATTGTCTGAAAATTGAGAAATATATGTTTTTTTACTTTTCTAAAATTACCGTATTTCCTCTAATAGAAGCCCATGGCTTCTATTTTTCAACCTMCCTCTGGGGTGGACTAATTTTGAAGAAAACGCTCAAATTAGAATGTTTTCGGCTTTCAACTGAACTGGAATAGTTTTCACACGACAAGAATTAGCAGAAAGGACCAGAAAACCAAAAAAAAAAGAGTATGGATAACCTAACCGGAAAGAAACATGAACAGCCAGGGTGGACTTCTATTAGAGGTGGGCTTCAAATAGAGGTGGGCTTCTATTAGAGGAAATACGGTAATATGGAGACTAGAACCTCTATAATCAAAAGATCACAAGAAATTCGATACTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31752</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>223530</contig_pos>
        <strand></strand>
        <context>gtatggataa[C/T]ctaaccggaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGAATTAGCAGAAAGGACCAGAAAACCAAAAAAAAAAGAGTATGGATAA</left_flank>
        <right_flank>CTAACCGGAAAGAAACATGAACAGCCAGGGTGGACTTCTATTAGAGGTGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGAAACAAAGGGAAAAAAGACGAGAAATGGCTAATTTGGGATTGCAACTTCTAGATGAATGGGCACCGATAAATGGAGGGACCAAGCGGGGAAAAATGGAAGAGAAGGCTCAACTTGTGGGTTCAAAAAGGGTGGAGCAAAGAGAGAAAAACGTCCCGGGGGTACGATTTCAGAGAATGAAAGAACACTGTTTATGTGCATGCACTTACGGATATTGAACTGGATTTTATTTATAAATCAGATTAGAGAACTGAAAAGTTAGATTTAAATTGTCTGAAAATTGAGAAATATATGTTTTTTTACTTTTCTAAAATTACCGTATTTCCTCTAATAGAAGCCCATGGCTTCTATTTTTCAACCTACCTCTGGGGTGGACTAATTTTGAAGAAAACGCTCAAATTAGAATGTTTTCGGCTTTCAACTGAACTGGAATAGTTTTCACACGACAAGAATTAGCAGAAAGGACCAGAAAACCAAAAAAAAAAGAGTATGGATAACCTAACCGGAAAGAAACATGAACAGCCAGGGTGGACTTCTATTAGAGGTGGGCTTCAAATAGAGGTGGGCTTCTATTAGAGGAAATACGGTAATATGGAGACTAGAACCTCTATAATCAAAAGATCACAAGAAATTCGATACTGAAATTTGGAAATTTCTGCAAAATTTGGACCATTTTGGTGATTCTGAATTTATAGTTGTCATCTGTTTTTGACAGCTTTTGAGTCTTCTGAACAATTATTGAATTTGTTATCTTAGTTTTCGGGAAAAAATTGTTGATTTTCAACTCTAGTAGTTGAGAACCTTTTGAAGCAGTTGTTGTGCTAAAAATTCGTTTTTTTTTCGTTTTAAGAAAAAAGTTTTTATTTCTAAATTCAAAAGTTTTAAATTGGAACCTTTTCCATAACTTCAAACTAAAAAAAATATTTTTGTATTAGAAAAAATGAGTCATCAGTTATGTTTTTGGCACCTCTTCATATTATGAATTAAGAATAAAACTT</canonical>
            <polymorphic>GGAGAAACAAAGGGAAAAAAGACGAGAAATGGCTAATTTGGGATTGCAACTTCTAGATGAATGGGCACCGATAAATGGAGGGACCAAGCGGGGAAAAATGGAAGAGAAGGCTCAACTTGTGGGTTCAAAAAGGGTGGAGCAAAGAGAGAAAAACGTCCCGGGGGTACGATTTCAGAGAATGAAAGAACACTGTTTATGTGCATGCACTTACGGATATTGAACTGGATTTTATTTATAAATCAGATTAGAGAACTGAAAAGTTAGATTTAAATTGTCTGAAAATTGAGAAATATATGTTTTTTTACTTTTCTAAAATTACCGTATTTCCTCTAATAGAAGCCCATGGCTTCTATTTTTCAACCTACCTCTGGGGTGGACTAATTTTGAAGAAAACGCTCAAATTAGAATGTTTTCGGCTTTCAACTGAACTGGAATAGTTTTCACACGACAAGAATTAGCAGAAAGGACCAGAAAACCAAAAAAAAAAGAGTATGGATAAYCTAACCGGAAAGAAACATGAACAGCCAGGGTGGACTTCTATTAGAGGTGGGCTTCAAATAGAGGTGGGCTTCTATTAGAGGAAATACGGTAATATGGAGACTAGAACCTCTATAATCAAAAGATCACAAGAAATTCGATACTGAAATTTGGAAATTTCTGCAAAATTTGGACCATTTTGGTGATTCTGAATTTATAGTTGTCATCTGTTTTTGACAGCTTTTGAGTCTTCTGAACAATTATTGAATTTGTTATCTTAGTTTTCGGGAAAAAATTGTTGATTTTCAACTCTAGTAGTTGAGAACCTTTTGAAGCAGTTGTTGTGCTAAAAATTCGTTTTTTTTTCGTTTTAAGAAAAAAGTTTTTATTTCTAAATTCAAAAGTTTTAAATTGGAACCTTTTCCATAACTTCAAACTAAAAAAAATATTTTTGTATTAGAAAAAATGAGTCATCAGTTATGTTTTTGGCACCTCTTCATATTATGAATTAAGAATAAAACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGATTAGAGAACTGAAAAGTTAGA</pcr_primer_p1>
		<pcr_primer_p2>TTCAGTATCGAATTTCTTGTGAT</pcr_primer_p2>
		<pcr_amplicon_size>406</pcr_amplicon_size>
		<canonical_amplicon>TCAGATTAGAGAACTGAAAAGTTAGATTTAAATTGTCTGAAAATTGAGAAATATATGTTTTTTTACTTTTCTAAAATTACCGTATTTCCTCTAATAGAAGCCCATGGCTTCTATTTTTCAACCTACCTCTGGGGTGGACTAATTTTGAAGAAAACGCTCAAATTAGAATGTTTTCGGCTTTCAACTGAACTGGAATAGTTTTCACACGACAAGAATTAGCAGAAAGGACCAGAAAACCAAAAAAAAAAGAGTATGGATAACCTAACCGGAAAGAAACATGAACAGCCAGGGTGGACTTCTATTAGAGGTGGGCTTCAAATAGAGGTGGGCTTCTATTAGAGGAAATACGGTAATATGGAGACTAGAACCTCTATAATCAAAAGATCACAAGAAATTCGATACTGAA</canonical_amplicon>
		<polymorphic_amplicon>TCAGATTAGAGAACTGAAAAGTTAGATTTAAATTGTCTGAAAATTGAGAAATATATGTTTTTTTACTTTTCTAAAATTACCGTATTTCCTCTAATAGAAGCCCATGGCTTCTATTTTTCAACCTACCTCTGGGGTGGACTAATTTTGAAGAAAACGCTCAAATTAGAATGTTTTCGGCTTTCAACTGAACTGGAATAGTTTTCACACGACAAGAATTAGCAGAAAGGACCAGAAAACCAAAAAAAAAAGAGTATGGATAAYCTAACCGGAAAGAAACATGAACAGCCAGGGTGGACTTCTATTAGAGGTGGGCTTCAAATAGAGGTGGGCTTCTATTAGAGGAAATACGGTAATATGGAGACTAGAACCTCTATAATCAAAAGATCACAAGAAATTCGATACTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31753</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>223591</contig_pos>
        <strand>+</strand>
        <context>gcttcaaata[A/C]aggtgggctt</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAAACATGAACAGCCAGGGTGGACTTCTATTAGAGGTGGGCTTCAAATA</left_flank>
        <right_flank>AGGTGGGCTTCTATTAGAGGAAATACGGTAATATGGAGACTAGAACCTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGCACCGATAAATGGAGGGACCAAGCGGGGAAAAATGGAAGAGAAGGCTCAACTTGTGGGTTCAAAAAGGGTGGAGCAAAGAGAGAAAAACGTCCCGGGGGTACGATTTCAGAGAATGAAAGAACACTGTTTATGTGCATGCACTTACGGATATTGAACTGGATTTTATTTATAAATCAGATTAGAGAACTGAAAAGTTAGATTTAAATTGTCTGAAAATTGAGAAATATATGTTTTTTTACTTTTCTAAAATTACCGTATTTCCTCTAATAGAAGCCCATGGCTTCTATTTTTCAACCTACCTCTGGGGTGGACTAATTTTGAAGAAAACGCTCAAATTAGAATGTTTTCGGCTTTCAACTGAACTGGAATAGTTTTCACACGACAAGAATTAGCAGAAAGGACCAGAAAACCAAAAAAAAAAGAGTATGGATAACCTAACCGGAAAGAAACATGAACAGCCAGGGTGGACTTCTATTAGAGGTGGGCTTCAAATAGAGGTGGGCTTCTATTAGAGGAAATACGGTAATATGGAGACTAGAACCTCTATAATCAAAAGATCACAAGAAATTCGATACTGAAATTTGGAAATTTCTGCAAAATTTGGACCATTTTGGTGATTCTGAATTTATAGTTGTCATCTGTTTTTGACAGCTTTTGAGTCTTCTGAACAATTATTGAATTTGTTATCTTAGTTTTCGGGAAAAAATTGTTGATTTTCAACTCTAGTAGTTGAGAACCTTTTGAAGCAGTTGTTGTGCTAAAAATTCGTTTTTTTTTCGTTTTAAGAAAAAAGTTTTTATTTCTAAATTCAAAAGTTTTAAATTGGAACCTTTTCCATAACTTCAAACTAAAAAAAATATTTTTGTATTAGAAAAAATGAGTCATCAGTTATGTTTTTGGCACCTCTTCATATTATGAATTAAGAATAAAACTTTTCTAGCAGGCTGCAACACATTTTCATAATTAAATTACTTTTCAGTCTTATTAAATGTATA</canonical>
            <polymorphic>TGGGCACCGATAAATGGAGGGACCAAGCGGGGAAAAATGGAAGAGAAGGCTCAACTTGTGGGTTCAAAAAGGGTGGAGCAAAGAGAGAAAAACGTCCCGGGGGTACGATTTCAGAGAATGAAAGAACACTGTTTATGTGCATGCACTTACGGATATTGAACTGGATTTTATTTATAAATCAGATTAGAGAACTGAAAAGTTAGATTTAAATTGTCTGAAAATTGAGAAATATATGTTTTTTTACTTTTCTAAAATTACCGTATTTCCTCTAATAGAAGCCCATGGCTTCTATTTTTCAACCTACCTCTGGGGTGGACTAATTTTGAAGAAAACGCTCAAATTAGAATGTTTTCGGCTTTCAACTGAACTGGAATAGTTTTCACACGACAAGAATTAGCAGAAAGGACCAGAAAACCAAAAAAAAAAGAGTATGGATAACCTAACCGGAAAGAAACATGAACAGCCAGGGTGGACTTCTATTAGAGGTGGGCTTCAAATAMAGGTGGGCTTCTATTAGAGGAAATACGGTAATATGGAGACTAGAACCTCTATAATCAAAAGATCACAAGAAATTCGATACTGAAATTTGGAAATTTCTGCAAAATTTGGACCATTTTGGTGATTCTGAATTTATAGTTGTCATCTGTTTTTGACAGCTTTTGAGTCTTCTGAACAATTATTGAATTTGTTATCTTAGTTTTCGGGAAAAAATTGTTGATTTTCAACTCTAGTAGTTGAGAACCTTTTGAAGCAGTTGTTGTGCTAAAAATTCGTTTTTTTTTCGTTTTAAGAAAAAAGTTTTTATTTCTAAATTCAAAAGTTTTAAATTGGAACCTTTTCCATAACTTCAAACTAAAAAAAATATTTTTGTATTAGAAAAAATGAGTCATCAGTTATGTTTTTGGCACCTCTTCATATTATGAATTAAGAATAAAACTTTTCTAGCAGGCTGCAACACATTTTCATAATTAAATTACTTTTCAGTCTTATTAAATGTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGATTAGAGAACTGAAAAGTTAGA</pcr_primer_p1>
		<pcr_primer_p2>TTCAGTATCGAATTTCTTGTGAT</pcr_primer_p2>
		<pcr_amplicon_size>406</pcr_amplicon_size>
		<canonical_amplicon>TCAGATTAGAGAACTGAAAAGTTAGATTTAAATTGTCTGAAAATTGAGAAATATATGTTTTTTTACTTTTCTAAAATTACCGTATTTCCTCTAATAGAAGCCCATGGCTTCTATTTTTCAACCTACCTCTGGGGTGGACTAATTTTGAAGAAAACGCTCAAATTAGAATGTTTTCGGCTTTCAACTGAACTGGAATAGTTTTCACACGACAAGAATTAGCAGAAAGGACCAGAAAACCAAAAAAAAAAGAGTATGGATAACCTAACCGGAAAGAAACATGAACAGCCAGGGTGGACTTCTATTAGAGGTGGGCTTCAAATAGAGGTGGGCTTCTATTAGAGGAAATACGGTAATATGGAGACTAGAACCTCTATAATCAAAAGATCACAAGAAATTCGATACTGAA</canonical_amplicon>
		<polymorphic_amplicon>TCAGATTAGAGAACTGAAAAGTTAGATTTAAATTGTCTGAAAATTGAGAAATATATGTTTTTTTACTTTTCTAAAATTACCGTATTTCCTCTAATAGAAGCCCATGGCTTCTATTTTTCAACCTACCTCTGGGGTGGACTAATTTTGAAGAAAACGCTCAAATTAGAATGTTTTCGGCTTTCAACTGAACTGGAATAGTTTTCACACGACAAGAATTAGCAGAAAGGACCAGAAAACCAAAAAAAAAAGAGTATGGATAACCTAACCGGAAAGAAACATGAACAGCCAGGGTGGACTTCTATTAGAGGTGGGCTTCAAATAMAGGTGGGCTTCTATTAGAGGAAATACGGTAATATGGAGACTAGAACCTCTATAATCAAAAGATCACAAGAAATTCGATACTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31754</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>225004</contig_pos>
        <strand></strand>
        <context>gagaaacatt[G/A]ttctgttcat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAACTTTGAGCTGCGTTATCGCTTTTCAACAATGGCGTGCGAGAAACATT</left_flank>
        <right_flank>TTCTGTTCATCTTCGGACAATCATAACAATACCTAGACTTGAGGACTCGC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGACCGCATATTTTTCTTCTCGAGCAAAGAACTTGAAACTAAGGAAGGTTGTGTCAGAAATAGAGAGAAAATAGAATAGAAATTGACATTATTTACGTATTCAACTGCAACTGGGATTTATGATCTGACTTGTTTTTAGAATAGAGTAAGAAGGGAAAATTAGTATTCCAAAAATGGGTCACTTGATATATCCTATTGAGCTTTCATCTTCATCTCATCGGTCAATCCTACAAAAAGCTGTTGAAAACTTACAGTATCGAGTGGTCTAGTTTCACTAATAAGCTTTGAAATGTCGACATCGTATCTTGATTCCAGGAGCATAAAACTTGAAAAACTGCTGTTATTTACAATATACTAACCCGGACTGAAATTTCTAACAACATAAAATTTTAGTTAAGCGTTGTACTGGGCTTAAATTTGAAATGCAAAAATTTCGAATTATTTGATCAACTTTGAGCTGCGTTATCGCTTTTCAACAATGGCGTGCGAGAAACATTGTTCTGTTCATCTTCGGACAATCATAACAATACCTAGACTTGAGGACTCGCTTTGAAAATTTCAGTAGTTTTGAATCAAGCATAAAATTATTTTTTCTACCAATTTCTATGCTTCCAGGATACTTTTAGCCCGGATAATTGTACATCACCCTGTATTTATTGGTGTTTTCTGAATTCTTTAAACTTTGATAGTGTCCACAACAAAAAATTCTGGATTTTCAGATGTGATAGGAGGATTCCGTCTATAACGTTTTGCATTTTAAGCCGATGTTCTCTTTCTCGACTTTGTTACTATCGTAAGAGATTGAAAAATCGAGTAGTCTGAAACGCCCTAACAATAAGCTTTTTCTGGTTACCAAGAAAACCCTTAAAATAGCAGGAAGCTAAGAAGAAAACACGAATCAATATATAGAGATGAGCTTTGCAATGAGGGAGATGCGATTAGCTTTTTTGCTCTCATTGCCTCGTCTCCGGCCGCTTTTGATTCATTCAAATAGAAAA</canonical>
            <polymorphic>TTTGACCGCATATTTTTCTTCTCGAGCAAAGAACTTGAAACTAAGGAAGGTTGTGTCAGAAATAGAGAGAAAATAGAATAGAAATTGACATTATTTACGTATTCAACTGCAACTGGGATTTATGATCTGACTTGTTTTTAGAATAGAGTAAGAAGGGAAAATTAGTATTCCAAAAATGGGTCACTTGATATATCCTATTGAGCTTTCATCTTCATCTCATCGGTCAATCCTACAAAAAGCTGTTGAAAACTTACAGTATCGAGTGGTCTAGTTTCACTAATAAGCTTTGAAATGTCGACATCGTATCTTGATTCCAGGAGCATAAAACTTGAAAAACTGCTGTTATTTACAATATACTAACCCGGACTGAAATTTCTAACAACATAAAATTTTAGTTAAGCGTTGTACTGGGCTTAAATTTGAAATGCAAAAATTTCGAATTATTTGATCAACTTTGAGCTGCGTTATCGCTTTTCAACAATGGCGTGCGAGAAACATTRTTCTGTTCATCTTCGGACAATCATAACAATACCTAGACTTGAGGACTCGCTTTGAAAATTTCAGTAGTTTTGAATCAAGCATAAAATTATTTTTTCTACCAATTTCTATGCTTCCAGGATACTTTTAGCCCGGATAATTGTACATCACCCTGTATTTATTGGTGTTTTCTGAATTCTTTAAACTTTGATAGTGTCCACAACAAAAAATTCTGGATTTTCAGATGTGATAGGAGGATTCCGTCTATAACGTTTTGCATTTTAAGCCGATGTTCTCTTTCTCGACTTTGTTACTATCGTAAGAGATTGAAAAATCGAGTAGTCTGAAACGCCCTAACAATAAGCTTTTTCTGGTTACCAAGAAAACCCTTAAAATAGCAGGAAGCTAAGAAGAAAACACGAATCAATATATAGAGATGAGCTTTGCAATGAGGGAGATGCGATTAGCTTTTTTGCTCTCATTGCCTCGTCTCCGGCCGCTTTTGATTCATTCAAATAGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCATAAAACTTGAAAAACTGC</pcr_primer_p1>
		<pcr_primer_p2>ATTCAGAAAACACCAATAAATACA</pcr_primer_p2>
		<pcr_amplicon_size>356</pcr_amplicon_size>
		<canonical_amplicon>AGCATAAAACTTGAAAAACTGCTGTTATTTACAATATACTAACCCGGACTGAAATTTCTAACAACATAAAATTTTAGTTAAGCGTTGTACTGGGCTTAAATTTGAAATGCAAAAATTTCGAATTATTTGATCAACTTTGAGCTGCGTTATCGCTTTTCAACAATGGCGTGCGAGAAACATTGTTCTGTTCATCTTCGGACAATCATAACAATACCTAGACTTGAGGACTCGCTTTGAAAATTTCAGTAGTTTTGAATCAAGCATAAAATTATTTTTTCTACCAATTTCTATGCTTCCAGGATACTTTTAGCCCGGATAATTGTACATCACCCTGTATTTATTGGTGTTTTCTGAAT</canonical_amplicon>
		<polymorphic_amplicon>AGCATAAAACTTGAAAAACTGCTGTTATTTACAATATACTAACCCGGACTGAAATTTCTAACAACATAAAATTTTAGTTAAGCGTTGTACTGGGCTTAAATTTGAAATGCAAAAATTTCGAATTATTTGATCAACTTTGAGCTGCGTTATCGCTTTTCAACAATGGCGTGCGAGAAACATTRTTCTGTTCATCTTCGGACAATCATAACAATACCTAGACTTGAGGACTCGCTTTGAAAATTTCAGTAGTTTTGAATCAAGCATAAAATTATTTTTTCTACCAATTTCTATGCTTCCAGGATACTTTTAGCCCGGATAATTGTACATCACCCTGTATTTATTGGTGTTTTCTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31755</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>234479</contig_pos>
        <strand>+</strand>
        <context>GTTTTTAACG[A/G]TGTAATGAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCATCTTTGAAAAAAAAAAGCAAAATCAACATCTAGACAGTTTTTAACG</left_flank>
        <right_flank>TGTAATGAGTCATTCATCTGAAAACTAACATCTTATCGGTAGAAAAAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAACTTACGAATTTTTTATATTTTGTAGGTTAAGAGTGAGAAACTGGATAAAAAGTACAATTTAAAATACGAAAAAGTTTACTCAAAAGTGCATACTTTGCTATAATATTGAAAAAATACCTTAACGACTTTTGATCTTCAGAATTCCTTAAAAACTTGATTCCTTCTTGTTATAAACATGGCTCTTTTCAGAAACTAATGAGTGCCTGGCCTAGAAAAGAGTAATATCAGGAAAAGAAAAAGAAAATCGTCAATAATCAGAAGTCACGTTTTCACCTTCTTCGCATTCTGAATATTCAGCACTTCTCCATTCGAAAGCAGGTGGATTCATCAAGAAGTTTTGTCTATTTTCCAACTTCCGATTTATAGTAATCTACTGTAGAAGACAATTCCTTTTGAAATAAAATACCGGTATTTCAATATGATTTTTTAGAGCTCATTCAGAATTATCATCTTTGAAAAAAAAAAGCAAAATCAACATCTAGACAGTTTTTAACGATGTAATGAGTCATTCATCTGAAAACTAACATCTTATCGGTAGAAAAAAACGCGAATGAAAATCGAATGACGAATAAAAATTGTTGAAAAGGGACTGAAATATATGAAATTAAATTTCACCTGCTCTTTAAAAAATCAGGTTTGAATACAAAACCAAAGGTTTGAAATGTCGAATCCCAGACAAGTTGAAGTTGGAATTTCTGACAAGGAAAAGTATTGCATAACAACAGAAAACAGGGAAGACAGAGTTCAAGAAAATTAGAAGCTGAATCAGAAGAAAAACACTGTCTTTCAGGCTTTTTCCAAATTAAAAGTTGATGAAATTTCAGTCAATCTACATCTAGGTACCGTAACCATCTGCAATGTTTCTTAGTGTGCACAAGGTGTTATTCTGGTACGAAAAAGGAGCTCGAATCTGTGGATTAGAAACGCCAGTGGCCGTGGGCGAAGGTCCCACAACGACAGTTACAGTACCCAAAAACTTCTTTTGTTTTCCGGATT</canonical>
            <polymorphic>AGAACTTACGAATTTTTTATATTTTGTAGGTTAAGAGTGAGAAACTGGATAAAAAGTACAATTTAAAATACGAAAAAGTTTACTCAAAAGTGCATACTTTGCTATAATATTGAAAAAATACCTTAACGACTTTTGATCTTCAGAATTCCTTAAAAACTTGATTCCTTCTTGTTATAAACATGGCTCTTTTCAGAAACTAATGAGTGCCTGGCCTAGAAAAGAGTAATATCAGGAAAAGAAAAAGAAAATCGTCAATAATCAGAAGTCACGTTTTCACCTTCTTCGCATTCTGAATATTCAGCACTTCTCCATTCGAAAGCAGGTGGATTCATCAAGAAGTTTTGTCTATTTTCCAACTTCCGATTTATAGTAATCTACTGTAGAAGACAATTCCTTTTGAAATAAAATACCGGTATTTCAATATGATTTTTTAGAGCTCATTCAGAATTATCATCTTTGAAAAAAAAAAGCAAAATCAACATCTAGACAGTTTTTAACGRTGTAATGAGTCATTCATCTGAAAACTAACATCTTATCGGTAGAAAAAAACGCGAATGAAAATCGAATGACGAATAAAAATTGTTGAAAAGGGACTGAAATATATGAAATTAAATTTCACCTGCTCTTTAAAAAATCAGGTTTGAATACAAAACCAAAGGTTTGAAATGTCGAATCCCAGACAAGTTGAAGTTGGAATTTCTGACAAGGAAAAGTATTGCATAACAACAGAAAACAGGGAAGACAGAGTTCAAGAAAATTAGAAGCTGAATCAGAAGAAAAACACTGTCTTTCAGGCTTTTTCCAAATTAAAAGTTGATGAAATTTCAGTCAATCTACATCTAGGTACCGTAACCATCTGCAATGTTTCTTAGTGTGCACAAGGTGTTATTCTGGTACGAAAAAGGAGCTCGAATCTGTGGATTAGAAACGCCAGTGGCCGTGGGCGAAGGTCCCACAACGACAGTTACAGTACCCAAAAACTTCTTTTGTTTTCCGGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTTTCCAACTTCCGATTTAT</pcr_primer_p1>
		<pcr_primer_p2>AGTCCCTTTTCAACAATTTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATTTTCCAACTTCCGATTTATAGTAATCTACTGTAGAAGACAATTCCTTTTGAAATAAAATACCGGTATTTCAATATGATTTTTTAGAGCTCATTCAGAATTATCATCTTTGAAAAAAAAAAGCAAAATCAACATCTAGACAGTTTTTAACGATGTAATGAGTCATTCATCTGAAAACTAACATCTTATCGGTAGAAAAAAACGCGAATGAAAATCGAATGACGAATAAAAATTGTTGAAAAGGGACT</canonical_amplicon>
		<polymorphic_amplicon>CTATTTTCCAACTTCCGATTTATAGTAATCTACTGTAGAAGACAATTCCTTTTGAAATAAAATACCGGTATTTCAATATGATTTTTTAGAGCTCATTCAGAATTATCATCTTTGAAAAAAAAAAGCAAAATCAACATCTAGACAGTTTTTAACGRTGTAATGAGTCATTCATCTGAAAACTAACATCTTATCGGTAGAAAAAAACGCGAATGAAAATCGAATGACGAATAAAAATTGTTGAAAAGGGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31756</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>242880</contig_pos>
        <strand>+</strand>
        <context>CAACTTCTTC[C/T]TTCGGCCCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGTACGAGTGTGGATGCCTTTTAGTTACAGATAGCAGAGCAACTTCTTC</left_flank>
        <right_flank>TTCGGCCCAACAATCTTTCTTGGTCTTCTGAGAATCTCCTCAAACTCTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGTTTTCGAGAACCTGCGTGAACCTTGACGAACCCTTCGAACTCGATGTAGCTCTTTGGTTTATCCTCCTTCACATCAACATATTCATCATCTTCATCCTCTGGTCTCCTTGTTTTTCTCAGTGGACGACTGGATTTTTCCACTCGAACCAATGTGATGTATTCCGGAACCTCTTCTTCATCGTAGTAATATTCTGGCTCAGCAGGAGTGGTTGTAGTTGTTGTAGTGGATTTCAACTTGCGAACTTTGCGTGGTTTCATCACAGTCTTCCTTGTGATCTTGAAGTCTAGACCTCCGATTTCTTGAACAACAGTCTCTTCAGCTGGAACACCAGTTCCGAAATGTTTTCGGATTCTGACTTCTCTTATCGTCGCATTTGGATGTTTTGTATTCTTTGTCAATTTCACAACTTCAGTTGGTTCTTCTTCCTCAGGACGATGCTTTGTTCCGTACGAGTGTGGATGCCTTTTAGTTACAGATAGCAGAGCAACTTCTTCCTTCGGCCCAACAATCTTTCTTGGTCTTCTGAGAATCTCCTCAAACTCTTCAGATTCATCGACATCTGGTTCTGGTTGGGTTGTCTTCATGATCATTCTCTTTACTTCGATAACTCCGCCCTCATCGATTCCATTATCAACATCGAATGGACGTCGTCTGCCAGGAATCTTGTGAATCACTTTCTTCACAAGAATGACTCCTGCTTCGGATTCAGAATCTTCATCAGGCCTTCCCGTGATCACCATCTTTTTGATTCCAGTCAAAACTCTGACTCCAAAATCTTCATTCCCTTTCCAATATCCTTCATCATCATCCGGTCGAAGATGTTCGTAGATTTCAATTTTCTCCACTCGTACCGTTTCTCCTCCACTCAAGCGTGGTTCTTCTGGAGTTGGAGGAATAATGATTTTTTTTTTGAGCTTGAGATCCGGAGTAGGCAGACATTCTTTGACCCATTTTGCATATGCTTTGTCATTTAAATTTAAATCATCGGTTTTCAC</canonical>
            <polymorphic>TGAGTTTTCGAGAACCTGCGTGAACCTTGACGAACCCTTCGAACTCGATGTAGCTCTTTGGTTTATCCTCCTTCACATCAACATATTCATCATCTTCATCCTCTGGTCTCCTTGTTTTTCTCAGTGGACGACTGGATTTTTCCACTCGAACCAATGTGATGTATTCCGGAACCTCTTCTTCATCGTAGTAATATTCTGGCTCAGCAGGAGTGGTTGTAGTTGTTGTAGTGGATTTCAACTTGCGAACTTTGCGTGGTTTCATCACAGTCTTCCTTGTGATCTTGAAGTCTAGACCTCCGATTTCTTGAACAACAGTCTCTTCAGCTGGAACACCAGTTCCGAAATGTTTTCGGATTCTGACTTCTCTTATCGTCGCATTTGGATGTTTTGTATTCTTTGTCAATTTCACAACTTCAGTTGGTTCTTCTTCCTCAGGACGATGCTTTGTTCCGTACGAGTGTGGATGCCTTTTAGTTACAGATAGCAGAGCAACTTCTTCYTTCGGCCCAACAATCTTTCTTGGTCTTCTGAGAATCTCCTCAAACTCTTCAGATTCATCGACATCTGGTTCTGGTTGGGTTGTCTTCATGATCATTCTCTTTACTTCGATAACTCCGCCCTCATCGATTCCATTATCAACATCGAATGGACGTCGTCTGCCAGGAATCTTGTGAATCACTTTCTTCACAAGAATGACTCCTGCTTCGGATTCAGAATCTTCATCAGGCCTTCCCGTGATCACCATCTTTTTGATTCCAGTCAAAACTCTGACTCCAAAATCTTCATTCCCTTTCCAATATCCTTCATCATCATCCGGTCGAAGATGTTCGTAGATTTCAATTTTCTCCACTCGTACCGTTTCTCCTCCACTCAAGCGTGGTTCTTCTGGAGTTGGAGGAATAATGATTTTTTTTTTGAGCTTGAGATCCGGAGTAGGCAGACATTCTTTGACCCATTTTGCATATGCTTTGTCATTTAAATTTAAATCATCGGTTTTCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGGATTCTGACTTCTCTTATC</pcr_primer_p1>
		<pcr_primer_p2>AAGAGAATGATCATGAAGACAAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCGGATTCTGACTTCTCTTATCGTCGCATTTGGATGTTTTGTATTCTTTGTCAATTTCACAACTTCAGTTGGTTCTTCTTCCTCAGGACGATGCTTTGTTCCGTACGAGTGTGGATGCCTTTTAGTTACAGATAGCAGAGCAACTTCTTCCTTCGGCCCAACAATCTTTCTTGGTCTTCTGAGAATCTCCTCAAACTCTTCAGATTCATCGACATCTGGTTCTGGTTGGGTTGTCTTCATGATCATTCTCTT</canonical_amplicon>
		<polymorphic_amplicon>TCGGATTCTGACTTCTCTTATCGTCGCATTTGGATGTTTTGTATTCTTTGTCAATTTCACAACTTCAGTTGGTTCTTCTTCCTCAGGACGATGCTTTGTTCCGTACGAGTGTGGATGCCTTTTAGTTACAGATAGCAGAGCAACTTCTTCYTTCGGCCCAACAATCTTTCTTGGTCTTCTGAGAATCTCCTCAAACTCTTCAGATTCATCGACATCTGGTTCTGGTTGGGTTGTCTTCATGATCATTCTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31757</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>242899</contig_pos>
        <strand>+</strand>
        <context>AACAATCTTT[C/T]TTGGTCTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTAGTTACAGATAGCAGAGCAACTTCTTCCTTCGGCCCAACAATCTTT</left_flank>
        <right_flank>TTGGTCTTCTGAGAATCTCCTCAAACTCTTCAGATTCATCGACATCTGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGAACCTTGACGAACCCTTCGAACTCGATGTAGCTCTTTGGTTTATCCTCCTTCACATCAACATATTCATCATCTTCATCCTCTGGTCTCCTTGTTTTTCTCAGTGGACGACTGGATTTTTCCACTCGAACCAATGTGATGTATTCCGGAACCTCTTCTTCATCGTAGTAATATTCTGGCTCAGCAGGAGTGGTTGTAGTTGTTGTAGTGGATTTCAACTTGCGAACTTTGCGTGGTTTCATCACAGTCTTCCTTGTGATCTTGAAGTCTAGACCTCCGATTTCTTGAACAACAGTCTCTTCAGCTGGAACACCAGTTCCGAAATGTTTTCGGATTCTGACTTCTCTTATCGTCGCATTTGGATGTTTTGTATTCTTTGTCAATTTCACAACTTCAGTTGGTTCTTCTTCCTCAGGACGATGCTTTGTTCCGTACGAGTGTGGATGCCTTTTAGTTACAGATAGCAGAGCAACTTCTTCCTTCGGCCCAACAATCTTTCTTGGTCTTCTGAGAATCTCCTCAAACTCTTCAGATTCATCGACATCTGGTTCTGGTTGGGTTGTCTTCATGATCATTCTCTTTACTTCGATAACTCCGCCCTCATCGATTCCATTATCAACATCGAATGGACGTCGTCTGCCAGGAATCTTGTGAATCACTTTCTTCACAAGAATGACTCCTGCTTCGGATTCAGAATCTTCATCAGGCCTTCCCGTGATCACCATCTTTTTGATTCCAGTCAAAACTCTGACTCCAAAATCTTCATTCCCTTTCCAATATCCTTCATCATCATCCGGTCGAAGATGTTCGTAGATTTCAATTTTCTCCACTCGTACCGTTTCTCCTCCACTCAAGCGTGGTTCTTCTGGAGTTGGAGGAATAATGATTTTTTTTTTGAGCTTGAGATCCGGAGTAGGCAGACATTCTTTGACCCATTTTGCATATGCTTTGTCATTTAAATTTAAATCATCGGTTTTCACATCAGAACATTTCAGAGAT</canonical>
            <polymorphic>GTGAACCTTGACGAACCCTTCGAACTCGATGTAGCTCTTTGGTTTATCCTCCTTCACATCAACATATTCATCATCTTCATCCTCTGGTCTCCTTGTTTTTCTCAGTGGACGACTGGATTTTTCCACTCGAACCAATGTGATGTATTCCGGAACCTCTTCTTCATCGTAGTAATATTCTGGCTCAGCAGGAGTGGTTGTAGTTGTTGTAGTGGATTTCAACTTGCGAACTTTGCGTGGTTTCATCACAGTCTTCCTTGTGATCTTGAAGTCTAGACCTCCGATTTCTTGAACAACAGTCTCTTCAGCTGGAACACCAGTTCCGAAATGTTTTCGGATTCTGACTTCTCTTATCGTCGCATTTGGATGTTTTGTATTCTTTGTCAATTTCACAACTTCAGTTGGTTCTTCTTCCTCAGGACGATGCTTTGTTCCGTACGAGTGTGGATGCCTTTTAGTTACAGATAGCAGAGCAACTTCTTCCTTCGGCCCAACAATCTTTYTTGGTCTTCTGAGAATCTCCTCAAACTCTTCAGATTCATCGACATCTGGTTCTGGTTGGGTTGTCTTCATGATCATTCTCTTTACTTCGATAACTCCGCCCTCATCGATTCCATTATCAACATCGAATGGACGTCGTCTGCCAGGAATCTTGTGAATCACTTTCTTCACAAGAATGACTCCTGCTTCGGATTCAGAATCTTCATCAGGCCTTCCCGTGATCACCATCTTTTTGATTCCAGTCAAAACTCTGACTCCAAAATCTTCATTCCCTTTCCAATATCCTTCATCATCATCCGGTCGAAGATGTTCGTAGATTTCAATTTTCTCCACTCGTACCGTTTCTCCTCCACTCAAGCGTGGTTCTTCTGGAGTTGGAGGAATAATGATTTTTTTTTTGAGCTTGAGATCCGGAGTAGGCAGACATTCTTTGACCCATTTTGCATATGCTTTGTCATTTAAATTTAAATCATCGGTTTTCACATCAGAACATTTCAGAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGGATTCTGACTTCTCTTATC</pcr_primer_p1>
		<pcr_primer_p2>AAGAGAATGATCATGAAGACAAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCGGATTCTGACTTCTCTTATCGTCGCATTTGGATGTTTTGTATTCTTTGTCAATTTCACAACTTCAGTTGGTTCTTCTTCCTCAGGACGATGCTTTGTTCCGTACGAGTGTGGATGCCTTTTAGTTACAGATAGCAGAGCAACTTCTTCCTTCGGCCCAACAATCTTTCTTGGTCTTCTGAGAATCTCCTCAAACTCTTCAGATTCATCGACATCTGGTTCTGGTTGGGTTGTCTTCATGATCATTCTCTT</canonical_amplicon>
		<polymorphic_amplicon>TCGGATTCTGACTTCTCTTATCGTCGCATTTGGATGTTTTGTATTCTTTGTCAATTTCACAACTTCAGTTGGTTCTTCTTCCTCAGGACGATGCTTTGTTCCGTACGAGTGTGGATGCCTTTTAGTTACAGATAGCAGAGCAACTTCTTCCTTCGGCCCAACAATCTTTYTTGGTCTTCTGAGAATCTCCTCAAACTCTTCAGATTCATCGACATCTGGTTCTGGTTGGGTTGTCTTCATGATCATTCTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31758</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>243356</contig_pos>
        <strand>+</strand>
        <context>GCTTTGTCAT[C/T]YAAATTTAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCCGGAGTAGGCAGACATTCTTTGACCCATTTTGCATATGCTTTGTCAT</left_flank>
        <right_flank>TAAATTTAAATCATCGGTTTTCACATCAGAACATTTCAGAGATTGACGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGATAGCAGAGCAACTTCTTCCTTCGGCCCAACAATCTTTCTTGGTCTTCTGAGAATCTCCTCAAACTCTTCAGATTCATCGACATCTGGTTCTGGTTGGGTTGTCTTCATGATCATTCTCTTTACTTCGATAACTCCGCCCTCATCGATTCCATTATCAACATCGAATGGACGTCGTCTGCCAGGAATCTTGTGAATCACTTTCTTCACAAGAATGACTCCTGCTTCGGATTCAGAATCTTCATCAGGCCTTCCCGTGATCACCATCTTTTTGATTCCAGTCAAAACTCTGACTCCAAAATCTTCATTCCCTTTCCAATATCCTTCATCATCATCCGGTCGAAGATGTTCGTAGATTTCAATTTTCTCCACTCGTACCGTTTCTCCTCCACTCAAGCGTGGTTCTTCTGGAGTTGGAGGAATAATGATTTTTTTTTTGAGCTTGAGATCCGGAGTAGGCAGACATTCTTTGACCCATTTTGCATATGCTTTGTCATTTAAATTTAAATCATCGGTTTTCACATCAGAACATTTCAGAGATTGACGACGCGGAGGAGGTGGAGTTGAGGCCGTTTCTCGTGTACGACATCGTTTGATGTGTTCTTCGATCTGAAATTTCCAAAAATGAGTCAGTATTTTAGATAGTTTTAAAATTGAATTTCCGGGGGCCATTTTTTTCAGGTTTTCCAGACACCAAACTACAGTTTTAATCGTTGGAGCTGTGTTGTTTCTTCGAGACCAGCTAATCGACAAAAAATTCTCATTTTTGAGGGTCTCGAAGAGATATCGAAGAGGTAACACAGCCAAAACGCGCGATACCGTAGTTTAGTGTCTGGAGAACTTAGAAAAAATGGAGCTTCGGACAGGAACCTTTTCATGAAAATTCACTCTGAATTCGGCATTAGAAATCTCACCTCTGGATAAGAAAGCTTCGACAAATCCACATTATGACAATCGAAAGAAGTCTTTCTTTCTAGTTGTGGGAGCGGAACTGGTTC</canonical>
            <polymorphic>ACAGATAGCAGAGCAACTTCTTCCTTCGGCCCAACAATCTTTCTTGGTCTTCTGAGAATCTCCTCAAACTCTTCAGATTCATCGACATCTGGTTCTGGTTGGGTTGTCTTCATGATCATTCTCTTTACTTCGATAACTCCGCCCTCATCGATTCCATTATCAACATCGAATGGACGTCGTCTGCCAGGAATCTTGTGAATCACTTTCTTCACAAGAATGACTCCTGCTTCGGATTCAGAATCTTCATCAGGCCTTCCCGTGATCACCATCTTTTTGATTCCAGTCAAAACTCTGACTCCAAAATCTTCATTCCCTTTCCAATATCCTTCATCATCATCCGGTCGAAGATGTTCGTAGATTTCAATTTTCTCCACTCGTACCGTTTCTCCTCCACTCAAGCGTGGTTCTTCTGGAGTTGGAGGAATAATGATTTTTTTTTTGAGCTTGAGATCCGGAGTAGGCAGACATTCTTTGACCCATTTTGCATATGCTTTGTCATYTAAATTTAAATCATCGGTTTTCACATCAGAACATTTCAGAGATTGACGACGCGGAGGAGGTGGAGTTGAGGCCGTTTCTCGTGTACGACATCGTTTGATGTGTTCTTCGATCTGAAATTTCCAAAAATGAGTCAGTATTTTAGATAGTTTTAAAATTGAATTTCCGGGGGCCATTTTTTTCAGGTTTTCCAGACACCAAACTACAGTTTTAATCGTTGGAGCTGTGTTGTTTCTTCGAGACCAGCTAATCGACAAAAAATTCTCATTTTTGAGGGTCTCGAAGAGATATCGAAGAGGTAACACAGCCAAAACGCGCGATACCGTAGTTTAGTGTCTGGAGAACTTAGAAAAAATGGAGCTTCGGACAGGAACCTTTTCATGAAAATTCACTCTGAATTCGGCATTAGAAATCTCACCTCTGGATAAGAAAGCTTCGACAAATCCACATTATGACAATCGAAAGAAGTCTTTCTTTCTAGTTGTGGGAGCGGAACTGGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 349 144 6</canonical_bands>
                <polymorphic_bands>507 349 144</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>500 291 144 59 6</canonical_bands>
                <polymorphic_bands>506 291 144 59</polymorphic_bands>
            </assay>
            <assay>
                <site>ATTTAAAT</site>
                <isoschizomers>
                    <enzyme>SmiI</enzyme>
                    <enzyme>SwaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 493 6</canonical_bands>
                <polymorphic_bands>507 493</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCAATTTTCTCCACTCGTA</pcr_primer_p1>
		<pcr_primer_p2>CGAAGAACACATCAAACGAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTTCAATTTTCTCCACTCGTACCGTTTCTCCTCCACTCAAGCGTGGTTCTTCTGGAGTTGGAGGAATAATGATTTTTTTTTTGAGCTTGAGATCCGGAGTAGGCAGACATTCTTTGACCCATTTTGCATATGCTTTGTCATTTAAATTTAAATCATCGGTTTTCACATCAGAACATTTCAGAGATTGACGACGCGGAGGAGGTGGAGTTGAGGCCGTTTCTCGTGTACGACATCGTTTGATGTGTTCTTCG</canonical_amplicon>
		<polymorphic_amplicon>ATTTCAATTTTCTCCACTCGTACCGTTTCTCCTCCACTCAAGCGTGGTTCTTCTGGAGTTGGAGGAATAATGATTTTTTTTTTGAGCTTGAGATCCGGAGTAGGCAGACATTCTTTGACCCATTTTGCATATGCTTTGTCATYTAAATTTAAATCATCGGTTTTCACATCAGAACATTTCAGAGATTGACGACGCGGAGGAGGTGGAGTTGAGGCCGTTTCTCGTGTACGACATCGTTTGATGTGTTCTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31759</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>243357</contig_pos>
        <strand>+</strand>
        <context>CTTTGTCATY[C/T]AAATTTAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCGGAGTAGGCAGACATTCTTTGACCCATTTTGCATATGCTTTGTCATT</left_flank>
        <right_flank>AAATTTAAATCATCGGTTTTCACATCAGAACATTTCAGAGATTGACGACG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGATAGCAGAGCAACTTCTTCCTTCGGCCCAACAATCTTTCTTGGTCTTCTGAGAATCTCCTCAAACTCTTCAGATTCATCGACATCTGGTTCTGGTTGGGTTGTCTTCATGATCATTCTCTTTACTTCGATAACTCCGCCCTCATCGATTCCATTATCAACATCGAATGGACGTCGTCTGCCAGGAATCTTGTGAATCACTTTCTTCACAAGAATGACTCCTGCTTCGGATTCAGAATCTTCATCAGGCCTTCCCGTGATCACCATCTTTTTGATTCCAGTCAAAACTCTGACTCCAAAATCTTCATTCCCTTTCCAATATCCTTCATCATCATCCGGTCGAAGATGTTCGTAGATTTCAATTTTCTCCACTCGTACCGTTTCTCCTCCACTCAAGCGTGGTTCTTCTGGAGTTGGAGGAATAATGATTTTTTTTTTGAGCTTGAGATCCGGAGTAGGCAGACATTCTTTGACCCATTTTGCATATGCTTTGTCATTTAAATTTAAATCATCGGTTTTCACATCAGAACATTTCAGAGATTGACGACGCGGAGGAGGTGGAGTTGAGGCCGTTTCTCGTGTACGACATCGTTTGATGTGTTCTTCGATCTGAAATTTCCAAAAATGAGTCAGTATTTTAGATAGTTTTAAAATTGAATTTCCGGGGGCCATTTTTTTCAGGTTTTCCAGACACCAAACTACAGTTTTAATCGTTGGAGCTGTGTTGTTTCTTCGAGACCAGCTAATCGACAAAAAATTCTCATTTTTGAGGGTCTCGAAGAGATATCGAAGAGGTAACACAGCCAAAACGCGCGATACCGTAGTTTAGTGTCTGGAGAACTTAGAAAAAATGGAGCTTCGGACAGGAACCTTTTCATGAAAATTCACTCTGAATTCGGCATTAGAAATCTCACCTCTGGATAAGAAAGCTTCGACAAATCCACATTATGACAATCGAAAGAAGTCTTTCTTTCTAGTTGTGGGAGCGGAACTGGTTCT</canonical>
            <polymorphic>CAGATAGCAGAGCAACTTCTTCCTTCGGCCCAACAATCTTTCTTGGTCTTCTGAGAATCTCCTCAAACTCTTCAGATTCATCGACATCTGGTTCTGGTTGGGTTGTCTTCATGATCATTCTCTTTACTTCGATAACTCCGCCCTCATCGATTCCATTATCAACATCGAATGGACGTCGTCTGCCAGGAATCTTGTGAATCACTTTCTTCACAAGAATGACTCCTGCTTCGGATTCAGAATCTTCATCAGGCCTTCCCGTGATCACCATCTTTTTGATTCCAGTCAAAACTCTGACTCCAAAATCTTCATTCCCTTTCCAATATCCTTCATCATCATCCGGTCGAAGATGTTCGTAGATTTCAATTTTCTCCACTCGTACCGTTTCTCCTCCACTCAAGCGTGGTTCTTCTGGAGTTGGAGGAATAATGATTTTTTTTTTGAGCTTGAGATCCGGAGTAGGCAGACATTCTTTGACCCATTTTGCATATGCTTTGTCATTYAAATTTAAATCATCGGTTTTCACATCAGAACATTTCAGAGATTGACGACGCGGAGGAGGTGGAGTTGAGGCCGTTTCTCGTGTACGACATCGTTTGATGTGTTCTTCGATCTGAAATTTCCAAAAATGAGTCAGTATTTTAGATAGTTTTAAAATTGAATTTCCGGGGGCCATTTTTTTCAGGTTTTCCAGACACCAAACTACAGTTTTAATCGTTGGAGCTGTGTTGTTTCTTCGAGACCAGCTAATCGACAAAAAATTCTCATTTTTGAGGGTCTCGAAGAGATATCGAAGAGGTAACACAGCCAAAACGCGCGATACCGTAGTTTAGTGTCTGGAGAACTTAGAAAAAATGGAGCTTCGGACAGGAACCTTTTCATGAAAATTCACTCTGAATTCGGCATTAGAAATCTCACCTCTGGATAAGAAAGCTTCGACAAATCCACATTATGACAATCGAAAGAAGTCTTTCTTTCTAGTTGTGGGAGCGGAACTGGTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 350 144 6</canonical_bands>
                <polymorphic_bands>506 350 144</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>499 292 144 59 6</canonical_bands>
                <polymorphic_bands>505 292 144 59</polymorphic_bands>
            </assay>
            <assay>
                <site>ATTTAAAT</site>
                <isoschizomers>
                    <enzyme>SmiI</enzyme>
                    <enzyme>SwaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 494 6</canonical_bands>
                <polymorphic_bands>506 494</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCAATTTTCTCCACTCGTA</pcr_primer_p1>
		<pcr_primer_p2>CGAAGAACACATCAAACGAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTTCAATTTTCTCCACTCGTACCGTTTCTCCTCCACTCAAGCGTGGTTCTTCTGGAGTTGGAGGAATAATGATTTTTTTTTTGAGCTTGAGATCCGGAGTAGGCAGACATTCTTTGACCCATTTTGCATATGCTTTGTCATTTAAATTTAAATCATCGGTTTTCACATCAGAACATTTCAGAGATTGACGACGCGGAGGAGGTGGAGTTGAGGCCGTTTCTCGTGTACGACATCGTTTGATGTGTTCTTCG</canonical_amplicon>
		<polymorphic_amplicon>ATTTCAATTTTCTCCACTCGTACCGTTTCTCCTCCACTCAAGCGTGGTTCTTCTGGAGTTGGAGGAATAATGATTTTTTTTTTGAGCTTGAGATCCGGAGTAGGCAGACATTCTTTGACCCATTTTGCATATGCTTTGTCATTYAAATTTAAATCATCGGTTTTCACATCAGAACATTTCAGAGATTGACGACGCGGAGGAGGTGGAGTTGAGGCCGTTTCTCGTGTACGACATCGTTTGATGTGTTCTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31760</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>260174</contig_pos>
        <strand>+</strand>
        <context>CTCATTAGTG[C/T]TGTCTATATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGTGACTGAAAGTTCGCTGTAACAATGAAGGTTCGTTTTCTCATTAGTG</left_flank>
        <right_flank>TGTCTATATTCGCCGGTTGATCGATATTCCATTCTGTCAAACAAATATTC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCACAGAAAATAATAAATTGTGAAAAGATACAGTACACCATTAAAGGGCTGCAATGAAAAAGCTTTGTGGGTCTTGAAATGAGTTTAAAGGGACATGGCTTCAAGAGTTCGGCACAACAGAAAAGGTCTTCTTTTTTTCTGGCTTTCAAAAACAGCTCATGAACTGCGTTTTTGATTTCCAATTTTAAATTGCCAGCAATGGTCATAGTCTTGTTCATTCTAACGTTCGCGTTGAAGTACTTTGTTATGAAATACAGGTTGCGAAAATTGTCTTTGTTCTGGAAAAAACAAACTGCTTCTTTTTTGTTGTGCATATTGATTTCCATGGTTCCGCTGTGTGGTGCCAAGCTTCGTGGCACATGCGTTTTCGCAATTTGTTCTTTCAAACTAAAGTTTTTTTCAGTTAACTGCTGTTGCGATTGCTCGCTTATTCGATCGATCTTCAACCTCGTGACTGAAAGTTCGCTGTAACAATGAAGGTTCGTTTTCTCATTAGTGTTGTCTATATTCGCCGGTTGATCGATATTCCATTCTGTCAAACAAATATTCTTTTGCGTTTTTTTTTGTAAATTGTGACTCACATAGATATATCTGAAAATTTCCTTTTTCAAGAGAAACCAAGTTGAAAACTGAACTTGTGTGCACGAAAAGAACATATGCGTCAGTTCTAACATGTCTGGCGTCTCTTCTGCCCTCTACACTTATGTTTTCTGTTCACGGGTCGACTGTGTTGGGTGTAGACCAACCAGCTATCCTTTTATTGATTCCGCTTCCTTTCGTAACATTTTTTTTTTCAGAAGTTGAATAGAACTTTCCCGATGTCAGCCTACGAAGATTTGCTCACAAAAGTTACAGCACCGACACTTACCACAGAAAACTGGGAAGGAATTCTTGGGTTCTGTGATATGGTAACAGTAAAAGTTTTGTTAAATACCATATTTAAAACCAAATTTCAGATCAATAAAGATTATGAGGGTCAAAAAACTGGATTGAAGGCTC</canonical>
            <polymorphic>TGCACAGAAAATAATAAATTGTGAAAAGATACAGTACACCATTAAAGGGCTGCAATGAAAAAGCTTTGTGGGTCTTGAAATGAGTTTAAAGGGACATGGCTTCAAGAGTTCGGCACAACAGAAAAGGTCTTCTTTTTTTCTGGCTTTCAAAAACAGCTCATGAACTGCGTTTTTGATTTCCAATTTTAAATTGCCAGCAATGGTCATAGTCTTGTTCATTCTAACGTTCGCGTTGAAGTACTTTGTTATGAAATACAGGTTGCGAAAATTGTCTTTGTTCTGGAAAAAACAAACTGCTTCTTTTTTGTTGTGCATATTGATTTCCATGGTTCCGCTGTGTGGTGCCAAGCTTCGTGGCACATGCGTTTTCGCAATTTGTTCTTTCAAACTAAAGTTTTTTTCAGTTAACTGCTGTTGCGATTGCTCGCTTATTCGATCGATCTTCAACCTCGTGACTGAAAGTTCGCTGTAACAATGAAGGTTCGTTTTCTCATTAGTGYTGTCTATATTCGCCGGTTGATCGATATTCCATTCTGTCAAACAAATATTCTTTTGCGTTTTTTTTTGTAAATTGTGACTCACATAGATATATCTGAAAATTTCCTTTTTCAAGAGAAACCAAGTTGAAAACTGAACTTGTGTGCACGAAAAGAACATATGCGTCAGTTCTAACATGTCTGGCGTCTCTTCTGCCCTCTACACTTATGTTTTCTGTTCACGGGTCGACTGTGTTGGGTGTAGACCAACCAGCTATCCTTTTATTGATTCCGCTTCCTTTCGTAACATTTTTTTTTTCAGAAGTTGAATAGAACTTTCCCGATGTCAGCCTACGAAGATTTGCTCACAAAAGTTACAGCACCGACACTTACCACAGAAAACTGGGAAGGAATTCTTGGGTTCTGTGATATGGTAACAGTAAAAGTTTTGTTAAATACCATATTTAAAACCAAATTTCAGATCAATAAAGATTATGAGGGTCAAAAAACTGGATTGAAGGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCGATCGATCTTCAACCT</pcr_primer_p1>
		<pcr_primer_p2>GACATGTTAGAACTGACGCATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTCGATCGATCTTCAACCTCGTGACTGAAAGTTCGCTGTAACAATGAAGGTTCGTTTTCTCATTAGTGTTGTCTATATTCGCCGGTTGATCGATATTCCATTCTGTCAAACAAATATTCTTTTGCGTTTTTTTTTGTAAATTGTGACTCACATAGATATATCTGAAAATTTCCTTTTTCAAGAGAAACCAAGTTGAAAACTGAACTTGTGTGCACGAAAAGAACATATGCGTCAGTTCTAACATGTC</canonical_amplicon>
		<polymorphic_amplicon>ATTCGATCGATCTTCAACCTCGTGACTGAAAGTTCGCTGTAACAATGAAGGTTCGTTTTCTCATTAGTGYTGTCTATATTCGCCGGTTGATCGATATTCCATTCTGTCAAACAAATATTCTTTTGCGTTTTTTTTTGTAAATTGTGACTCACATAGATATATCTGAAAATTTCCTTTTTCAAGAGAAACCAAGTTGAAAACTGAACTTGTGTGCACGAAAAGAACATATGCGTCAGTTCTAACATGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31761</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>260232</contig_pos>
        <strand>+</strand>
        <context>TTCTTTTGCG[A/T]TTTTTTTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTCGCCGGTTGATCGATATTCCATTCTGTCAAACAAATATTCTTTTGCG</left_flank>
        <right_flank>TTTTTTTTGTAAATTGTGACTCACATAGATATATCTGAAAATTTCCTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGCTTTGTGGGTCTTGAAATGAGTTTAAAGGGACATGGCTTCAAGAGTTCGGCACAACAGAAAAGGTCTTCTTTTTTTCTGGCTTTCAAAAACAGCTCATGAACTGCGTTTTTGATTTCCAATTTTAAATTGCCAGCAATGGTCATAGTCTTGTTCATTCTAACGTTCGCGTTGAAGTACTTTGTTATGAAATACAGGTTGCGAAAATTGTCTTTGTTCTGGAAAAAACAAACTGCTTCTTTTTTGTTGTGCATATTGATTTCCATGGTTCCGCTGTGTGGTGCCAAGCTTCGTGGCACATGCGTTTTCGCAATTTGTTCTTTCAAACTAAAGTTTTTTTCAGTTAACTGCTGTTGCGATTGCTCGCTTATTCGATCGATCTTCAACCTCGTGACTGAAAGTTCGCTGTAACAATGAAGGTTCGTTTTCTCATTAGTGTTGTCTATATTCGCCGGTTGATCGATATTCCATTCTGTCAAACAAATATTCTTTTGCGTTTTTTTTTGTAAATTGTGACTCACATAGATATATCTGAAAATTTCCTTTTTCAAGAGAAACCAAGTTGAAAACTGAACTTGTGTGCACGAAAAGAACATATGCGTCAGTTCTAACATGTCTGGCGTCTCTTCTGCCCTCTACACTTATGTTTTCTGTTCACGGGTCGACTGTGTTGGGTGTAGACCAACCAGCTATCCTTTTATTGATTCCGCTTCCTTTCGTAACATTTTTTTTTTCAGAAGTTGAATAGAACTTTCCCGATGTCAGCCTACGAAGATTTGCTCACAAAAGTTACAGCACCGACACTTACCACAGAAAACTGGGAAGGAATTCTTGGGTTCTGTGATATGGTAACAGTAAAAGTTTTGTTAAATACCATATTTAAAACCAAATTTCAGATCAATAAAGATTATGAGGGTCAAAAAACTGGATTGAAGGCTCTTCGTAAGCGACTAAACAACCGTGACCCACATGTAGTTCTTCTTGCCGTTTCTGTTCT</canonical>
            <polymorphic>AAAAGCTTTGTGGGTCTTGAAATGAGTTTAAAGGGACATGGCTTCAAGAGTTCGGCACAACAGAAAAGGTCTTCTTTTTTTCTGGCTTTCAAAAACAGCTCATGAACTGCGTTTTTGATTTCCAATTTTAAATTGCCAGCAATGGTCATAGTCTTGTTCATTCTAACGTTCGCGTTGAAGTACTTTGTTATGAAATACAGGTTGCGAAAATTGTCTTTGTTCTGGAAAAAACAAACTGCTTCTTTTTTGTTGTGCATATTGATTTCCATGGTTCCGCTGTGTGGTGCCAAGCTTCGTGGCACATGCGTTTTCGCAATTTGTTCTTTCAAACTAAAGTTTTTTTCAGTTAACTGCTGTTGCGATTGCTCGCTTATTCGATCGATCTTCAACCTCGTGACTGAAAGTTCGCTGTAACAATGAAGGTTCGTTTTCTCATTAGTGTTGTCTATATTCGCCGGTTGATCGATATTCCATTCTGTCAAACAAATATTCTTTTGCGWTTTTTTTTGTAAATTGTGACTCACATAGATATATCTGAAAATTTCCTTTTTCAAGAGAAACCAAGTTGAAAACTGAACTTGTGTGCACGAAAAGAACATATGCGTCAGTTCTAACATGTCTGGCGTCTCTTCTGCCCTCTACACTTATGTTTTCTGTTCACGGGTCGACTGTGTTGGGTGTAGACCAACCAGCTATCCTTTTATTGATTCCGCTTCCTTTCGTAACATTTTTTTTTTCAGAAGTTGAATAGAACTTTCCCGATGTCAGCCTACGAAGATTTGCTCACAAAAGTTACAGCACCGACACTTACCACAGAAAACTGGGAAGGAATTCTTGGGTTCTGTGATATGGTAACAGTAAAAGTTTTGTTAAATACCATATTTAAAACCAAATTTCAGATCAATAAAGATTATGAGGGTCAAAAAACTGGATTGAAGGCTCTTCGTAAGCGACTAAACAACCGTGACCCACATGTAGTTCTTCTTGCCGTTTCTGTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAAGGTTCGTTTTCTCATTA</pcr_primer_p1>
		<pcr_primer_p2>CGTGAACAGAAAACATAAGTGTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATGAAGGTTCGTTTTCTCATTAGTGTTGTCTATATTCGCCGGTTGATCGATATTCCATTCTGTCAAACAAATATTCTTTTGCGTTTTTTTTTGTAAATTGTGACTCACATAGATATATCTGAAAATTTCCTTTTTCAAGAGAAACCAAGTTGAAAACTGAACTTGTGTGCACGAAAAGAACATATGCGTCAGTTCTAACATGTCTGGCGTCTCTTCTGCCCTCTACACTTATGTTTTCTGTTCACG</canonical_amplicon>
		<polymorphic_amplicon>ATGAAGGTTCGTTTTCTCATTAGTGTTGTCTATATTCGCCGGTTGATCGATATTCCATTCTGTCAAACAAATATTCTTTTGCGWTTTTTTTTGTAAATTGTGACTCACATAGATATATCTGAAAATTTCCTTTTTCAAGAGAAACCAAGTTGAAAACTGAACTTGTGTGCACGAAAAGAACATATGCGTCAGTTCTAACATGTCTGGCGTCTCTTCTGCCCTCTACACTTATGTTTTCTGTTCACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31762</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>260263</contig_pos>
        <strand></strand>
        <context>TCACATAGAT[A/T]TATCTGAAAW</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAACAAATATTCTTTTGCGTTTTTTTTTGTAAATTGTGACTCACATAGAT</left_flank>
        <right_flank>TATCTGAAAATTTCCTTTTTCAAGAGAAACCAAGTTGAAAACTGAACTTG</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGGACATGGCTTCAAGAGTTCGGCACAACAGAAAAGGTCTTCTTTTTTTCTGGCTTTCAAAAACAGCTCATGAACTGCGTTTTTGATTTCCAATTTTAAATTGCCAGCAATGGTCATAGTCTTGTTCATTCTAACGTTCGCGTTGAAGTACTTTGTTATGAAATACAGGTTGCGAAAATTGTCTTTGTTCTGGAAAAAACAAACTGCTTCTTTTTTGTTGTGCATATTGATTTCCATGGTTCCGCTGTGTGGTGCCAAGCTTCGTGGCACATGCGTTTTCGCAATTTGTTCTTTCAAACTAAAGTTTTTTTCAGTTAACTGCTGTTGCGATTGCTCGCTTATTCGATCGATCTTCAACCTCGTGACTGAAAGTTCGCTGTAACAATGAAGGTTCGTTTTCTCATTAGTGTTGTCTATATTCGCCGGTTGATCGATATTCCATTCTGTCAAACAAATATTCTTTTGCGTTTTTTTTTGTAAATTGTGACTCACATAGATATATCTGAAAATTTCCTTTTTCAAGAGAAACCAAGTTGAAAACTGAACTTGTGTGCACGAAAAGAACATATGCGTCAGTTCTAACATGTCTGGCGTCTCTTCTGCCCTCTACACTTATGTTTTCTGTTCACGGGTCGACTGTGTTGGGTGTAGACCAACCAGCTATCCTTTTATTGATTCCGCTTCCTTTCGTAACATTTTTTTTTTCAGAAGTTGAATAGAACTTTCCCGATGTCAGCCTACGAAGATTTGCTCACAAAAGTTACAGCACCGACACTTACCACAGAAAACTGGGAAGGAATTCTTGGGTTCTGTGATATGGTAACAGTAAAAGTTTTGTTAAATACCATATTTAAAACCAAATTTCAGATCAATAAAGATTATGAGGGTCAAAAAACTGGATTGAAGGCTCTTCGTAAGCGACTAAACAACCGTGACCCACATGTAGTTCTTCTTGCCGTTTCTGTTCTCGACTCATGTTGGGCAAATTGTCAAGAACGA</canonical>
            <polymorphic>AGGGACATGGCTTCAAGAGTTCGGCACAACAGAAAAGGTCTTCTTTTTTTCTGGCTTTCAAAAACAGCTCATGAACTGCGTTTTTGATTTCCAATTTTAAATTGCCAGCAATGGTCATAGTCTTGTTCATTCTAACGTTCGCGTTGAAGTACTTTGTTATGAAATACAGGTTGCGAAAATTGTCTTTGTTCTGGAAAAAACAAACTGCTTCTTTTTTGTTGTGCATATTGATTTCCATGGTTCCGCTGTGTGGTGCCAAGCTTCGTGGCACATGCGTTTTCGCAATTTGTTCTTTCAAACTAAAGTTTTTTTCAGTTAACTGCTGTTGCGATTGCTCGCTTATTCGATCGATCTTCAACCTCGTGACTGAAAGTTCGCTGTAACAATGAAGGTTCGTTTTCTCATTAGTGTTGTCTATATTCGCCGGTTGATCGATATTCCATTCTGTCAAACAAATATTCTTTTGCGTTTTTTTTTGTAAATTGTGACTCACATAGATWTATCTGAAAATTTCCTTTTTCAAGAGAAACCAAGTTGAAAACTGAACTTGTGTGCACGAAAAGAACATATGCGTCAGTTCTAACATGTCTGGCGTCTCTTCTGCCCTCTACACTTATGTTTTCTGTTCACGGGTCGACTGTGTTGGGTGTAGACCAACCAGCTATCCTTTTATTGATTCCGCTTCCTTTCGTAACATTTTTTTTTTCAGAAGTTGAATAGAACTTTCCCGATGTCAGCCTACGAAGATTTGCTCACAAAAGTTACAGCACCGACACTTACCACAGAAAACTGGGAAGGAATTCTTGGGTTCTGTGATATGGTAACAGTAAAAGTTTTGTTAAATACCATATTTAAAACCAAATTTCAGATCAATAAAGATTATGAGGGTCAAAAAACTGGATTGAAGGCTCTTCGTAAGCGACTAAACAACCGTGACCCACATGTAGTTCTTCTTGCCGTTTCTGTTCTCGACTCATGTTGGGCAAATTGTCAAGAACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATATTCCATTCTGTCAAACAAA</pcr_primer_p1>
		<pcr_primer_p2>GAATCAATAAAAGGATAGCTGGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GATATTCCATTCTGTCAAACAAATATTCTTTTGCGTTTTTTTTTGTAAATTGTGACTCACATAGATATATCTGAAAATTTCCTTTTTCAAGAGAAACCAAGTTGAAAACTGAACTTGTGTGCACGAAAAGAACATATGCGTCAGTTCTAACATGTCTGGCGTCTCTTCTGCCCTCTACACTTATGTTTTCTGTTCACGGGTCGACTGTGTTGGGTGTAGACCAACCAGCTATCCTTTTATTGATTC</canonical_amplicon>
		<polymorphic_amplicon>GATATTCCATTCTGTCAAACAAATATTCTTTTGCGTTTTTTTTTGTAAATTGTGACTCACATAGATWTATCTGAAAATTTCCTTTTTCAAGAGAAACCAAGTTGAAAACTGAACTTGTGTGCACGAAAAGAACATATGCGTCAGTTCTAACATGTCTGGCGTCTCTTCTGCCCTCTACACTTATGTTTTCTGTTCACGGGTCGACTGTGTTGGGTGTAGACCAACCAGCTATCCTTTTATTGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31763</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>260273</contig_pos>
        <strand></strand>
        <context>WTATCTGAAA[A/T]TTTCCTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTTTTGCGTTTTTTTTTGTAAATTGTGACTCACATAGATATATCTGAAA</left_flank>
        <right_flank>TTTCCTTTTTCAAGAGAAACCAAGTTGAAAACTGAACTTGTGTGCACGAA</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCAAGAGTTCGGCACAACAGAAAAGGTCTTCTTTTTTTCTGGCTTTCAAAAACAGCTCATGAACTGCGTTTTTGATTTCCAATTTTAAATTGCCAGCAATGGTCATAGTCTTGTTCATTCTAACGTTCGCGTTGAAGTACTTTGTTATGAAATACAGGTTGCGAAAATTGTCTTTGTTCTGGAAAAAACAAACTGCTTCTTTTTTGTTGTGCATATTGATTTCCATGGTTCCGCTGTGTGGTGCCAAGCTTCGTGGCACATGCGTTTTCGCAATTTGTTCTTTCAAACTAAAGTTTTTTTCAGTTAACTGCTGTTGCGATTGCTCGCTTATTCGATCGATCTTCAACCTCGTGACTGAAAGTTCGCTGTAACAATGAAGGTTCGTTTTCTCATTAGTGTTGTCTATATTCGCCGGTTGATCGATATTCCATTCTGTCAAACAAATATTCTTTTGCGTTTTTTTTTGTAAATTGTGACTCACATAGATATATCTGAAAATTTCCTTTTTCAAGAGAAACCAAGTTGAAAACTGAACTTGTGTGCACGAAAAGAACATATGCGTCAGTTCTAACATGTCTGGCGTCTCTTCTGCCCTCTACACTTATGTTTTCTGTTCACGGGTCGACTGTGTTGGGTGTAGACCAACCAGCTATCCTTTTATTGATTCCGCTTCCTTTCGTAACATTTTTTTTTTCAGAAGTTGAATAGAACTTTCCCGATGTCAGCCTACGAAGATTTGCTCACAAAAGTTACAGCACCGACACTTACCACAGAAAACTGGGAAGGAATTCTTGGGTTCTGTGATATGGTAACAGTAAAAGTTTTGTTAAATACCATATTTAAAACCAAATTTCAGATCAATAAAGATTATGAGGGTCAAAAAACTGGATTGAAGGCTCTTCGTAAGCGACTAAACAACCGTGACCCACATGTAGTTCTTCTTGCCGTTTCTGTTCTCGACTCATGTTGGGCAAATTGTCAAGAACGATTCAGAAAAG</canonical>
            <polymorphic>CTTCAAGAGTTCGGCACAACAGAAAAGGTCTTCTTTTTTTCTGGCTTTCAAAAACAGCTCATGAACTGCGTTTTTGATTTCCAATTTTAAATTGCCAGCAATGGTCATAGTCTTGTTCATTCTAACGTTCGCGTTGAAGTACTTTGTTATGAAATACAGGTTGCGAAAATTGTCTTTGTTCTGGAAAAAACAAACTGCTTCTTTTTTGTTGTGCATATTGATTTCCATGGTTCCGCTGTGTGGTGCCAAGCTTCGTGGCACATGCGTTTTCGCAATTTGTTCTTTCAAACTAAAGTTTTTTTCAGTTAACTGCTGTTGCGATTGCTCGCTTATTCGATCGATCTTCAACCTCGTGACTGAAAGTTCGCTGTAACAATGAAGGTTCGTTTTCTCATTAGTGTTGTCTATATTCGCCGGTTGATCGATATTCCATTCTGTCAAACAAATATTCTTTTGCGTTTTTTTTTGTAAATTGTGACTCACATAGATATATCTGAAAWTTTCCTTTTTCAAGAGAAACCAAGTTGAAAACTGAACTTGTGTGCACGAAAAGAACATATGCGTCAGTTCTAACATGTCTGGCGTCTCTTCTGCCCTCTACACTTATGTTTTCTGTTCACGGGTCGACTGTGTTGGGTGTAGACCAACCAGCTATCCTTTTATTGATTCCGCTTCCTTTCGTAACATTTTTTTTTTCAGAAGTTGAATAGAACTTTCCCGATGTCAGCCTACGAAGATTTGCTCACAAAAGTTACAGCACCGACACTTACCACAGAAAACTGGGAAGGAATTCTTGGGTTCTGTGATATGGTAACAGTAAAAGTTTTGTTAAATACCATATTTAAAACCAAATTTCAGATCAATAAAGATTATGAGGGTCAAAAAACTGGATTGAAGGCTCTTCGTAAGCGACTAAACAACCGTGACCCACATGTAGTTCTTCTTGCCGTTTCTGTTCTCGACTCATGTTGGGCAAATTGTCAAGAACGATTCAGAAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>498 290 150 62</canonical_bands>
                <polymorphic_bands>788 150 62</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>290 197 125 106 82 78 62 28 25 7</canonical_bands>
                <polymorphic_bands>318 197 125 106 82 78 62 25 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATATTCCATTCTGTCAAACAAA</pcr_primer_p1>
		<pcr_primer_p2>GAATCAATAAAAGGATAGCTGGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GATATTCCATTCTGTCAAACAAATATTCTTTTGCGTTTTTTTTTGTAAATTGTGACTCACATAGATATATCTGAAAATTTCCTTTTTCAAGAGAAACCAAGTTGAAAACTGAACTTGTGTGCACGAAAAGAACATATGCGTCAGTTCTAACATGTCTGGCGTCTCTTCTGCCCTCTACACTTATGTTTTCTGTTCACGGGTCGACTGTGTTGGGTGTAGACCAACCAGCTATCCTTTTATTGATTC</canonical_amplicon>
		<polymorphic_amplicon>GATATTCCATTCTGTCAAACAAATATTCTTTTGCGTTTTTTTTTGTAAATTGTGACTCACATAGATATATCTGAAAWTTTCCTTTTTCAAGAGAAACCAAGTTGAAAACTGAACTTGTGTGCACGAAAAGAACATATGCGTCAGTTCTAACATGTCTGGCGTCTCTTCTGCCCTCTACACTTATGTTTTCTGTTCACGGGTCGACTGTGTTGGGTGTAGACCAACCAGCTATCCTTTTATTGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31764</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>260396</contig_pos>
        <strand>+</strand>
        <context>CTGTTCACGG[C/G]YCGACTGTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACATGTCTGGCGTCTCTTCTGCCCTCTACACTTATGTTTTCTGTTCACGG</left_flank>
        <right_flank>TCGACTGTGTTGGGTGTAGACCAACCAGCTATCCTTTTATTGATTCCGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACGTTCGCGTTGAAGTACTTTGTTATGAAATACAGGTTGCGAAAATTGTCTTTGTTCTGGAAAAAACAAACTGCTTCTTTTTTGTTGTGCATATTGATTTCCATGGTTCCGCTGTGTGGTGCCAAGCTTCGTGGCACATGCGTTTTCGCAATTTGTTCTTTCAAACTAAAGTTTTTTTCAGTTAACTGCTGTTGCGATTGCTCGCTTATTCGATCGATCTTCAACCTCGTGACTGAAAGTTCGCTGTAACAATGAAGGTTCGTTTTCTCATTAGTGTTGTCTATATTCGCCGGTTGATCGATATTCCATTCTGTCAAACAAATATTCTTTTGCGTTTTTTTTTGTAAATTGTGACTCACATAGATATATCTGAAAATTTCCTTTTTCAAGAGAAACCAAGTTGAAAACTGAACTTGTGTGCACGAAAAGAACATATGCGTCAGTTCTAACATGTCTGGCGTCTCTTCTGCCCTCTACACTTATGTTTTCTGTTCACGGGTCGACTGTGTTGGGTGTAGACCAACCAGCTATCCTTTTATTGATTCCGCTTCCTTTCGTAACATTTTTTTTTTCAGAAGTTGAATAGAACTTTCCCGATGTCAGCCTACGAAGATTTGCTCACAAAAGTTACAGCACCGACACTTACCACAGAAAACTGGGAAGGAATTCTTGGGTTCTGTGATATGGTAACAGTAAAAGTTTTGTTAAATACCATATTTAAAACCAAATTTCAGATCAATAAAGATTATGAGGGTCAAAAAACTGGATTGAAGGCTCTTCGTAAGCGACTAAACAACCGTGACCCACATGTAGTTCTTCTTGCCGTTTCTGTTCTCGACTCATGTTGGGCAAATTGTCAAGAACGATTCAGAAAAGAAGTTTCGTCTGCTCAGTTCATCAATGAACTCAAAGCACTTTGCACTTCGGTGAGTGTTTCATTGCTCGTCGATGTATATTTCCAATGTTTCTACAGAGTCAGCGTCAAGTTGCTGAAAAAAT</canonical>
            <polymorphic>AACGTTCGCGTTGAAGTACTTTGTTATGAAATACAGGTTGCGAAAATTGTCTTTGTTCTGGAAAAAACAAACTGCTTCTTTTTTGTTGTGCATATTGATTTCCATGGTTCCGCTGTGTGGTGCCAAGCTTCGTGGCACATGCGTTTTCGCAATTTGTTCTTTCAAACTAAAGTTTTTTTCAGTTAACTGCTGTTGCGATTGCTCGCTTATTCGATCGATCTTCAACCTCGTGACTGAAAGTTCGCTGTAACAATGAAGGTTCGTTTTCTCATTAGTGTTGTCTATATTCGCCGGTTGATCGATATTCCATTCTGTCAAACAAATATTCTTTTGCGTTTTTTTTTGTAAATTGTGACTCACATAGATATATCTGAAAATTTCCTTTTTCAAGAGAAACCAAGTTGAAAACTGAACTTGTGTGCACGAAAAGAACATATGCGTCAGTTCTAACATGTCTGGCGTCTCTTCTGCCCTCTACACTTATGTTTTCTGTTCACGGSTCGACTGTGTTGGGTGTAGACCAACCAGCTATCCTTTTATTGATTCCGCTTCCTTTCGTAACATTTTTTTTTTCAGAAGTTGAATAGAACTTTCCCGATGTCAGCCTACGAAGATTTGCTCACAAAAGTTACAGCACCGACACTTACCACAGAAAACTGGGAAGGAATTCTTGGGTTCTGTGATATGGTAACAGTAAAAGTTTTGTTAAATACCATATTTAAAACCAAATTTCAGATCAATAAAGATTATGAGGGTCAAAAAACTGGATTGAAGGCTCTTCGTAAGCGACTAAACAACCGTGACCCACATGTAGTTCTTCTTGCCGTTTCTGTTCTCGACTCATGTTGGGCAAATTGTCAAGAACGATTCAGAAAAGAAGTTTCGTCTGCTCAGTTCATCAATGAACTCAAAGCACTTTGCACTTCGGTGAGTGTTTCATTGCTCGTCGATGTATATTTCCAATGTTTCTACAGAGTCAGCGTCAAGTTGCTGAAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 483 16</canonical_bands>
                <polymorphic_bands>517 483</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>498 318 184</canonical_bands>
                <polymorphic_bands>816 184</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>482 237 184 73 16 8</canonical_bands>
                <polymorphic_bands>482 237 184 73 24</polymorphic_bands>
            </assay>
            <assay>
                <site>GTCGAC</site>
                <isoschizomers>
                    <enzyme>SalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGAGAAACCAAGTTGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CTGTAACTTTTGTGAGCAAATCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAAGAGAAACCAAGTTGAAAACTGAACTTGTGTGCACGAAAAGAACATATGCGTCAGTTCTAACATGTCTGGCGTCTCTTCTGCCCTCTACACTTATGTTTTCTGTTCACGGGTCGACTGTGTTGGGTGTAGACCAACCAGCTATCCTTTTATTGATTCCGCTTCCTTTCGTAACATTTTTTTTTTCAGAAGTTGAATAGAACTTTCCCGATGTCAGCCTACGAAGATTTGCTCACAAAAGTTACAG</canonical_amplicon>
		<polymorphic_amplicon>CAAGAGAAACCAAGTTGAAAACTGAACTTGTGTGCACGAAAAGAACATATGCGTCAGTTCTAACATGTCTGGCGTCTCTTCTGCCCTCTACACTTATGTTTTCTGTTCACGGSTCGACTGTGTTGGGTGTAGACCAACCAGCTATCCTTTTATTGATTCCGCTTCCTTTCGTAACATTTTTTTTTTCAGAAGTTGAATAGAACTTTCCCGATGTCAGCCTACGAAGATTTGCTCACAAAAGTTACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31765</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>260397</contig_pos>
        <strand>+</strand>
        <context>TGTTCACGGS[C/T]CGACTGTGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATGTCTGGCGTCTCTTCTGCCCTCTACACTTATGTTTTCTGTTCACGGG</left_flank>
        <right_flank>CGACTGTGTTGGGTGTAGACCAACCAGCTATCCTTTTATTGATTCCGCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGTTCGCGTTGAAGTACTTTGTTATGAAATACAGGTTGCGAAAATTGTCTTTGTTCTGGAAAAAACAAACTGCTTCTTTTTTGTTGTGCATATTGATTTCCATGGTTCCGCTGTGTGGTGCCAAGCTTCGTGGCACATGCGTTTTCGCAATTTGTTCTTTCAAACTAAAGTTTTTTTCAGTTAACTGCTGTTGCGATTGCTCGCTTATTCGATCGATCTTCAACCTCGTGACTGAAAGTTCGCTGTAACAATGAAGGTTCGTTTTCTCATTAGTGTTGTCTATATTCGCCGGTTGATCGATATTCCATTCTGTCAAACAAATATTCTTTTGCGTTTTTTTTTGTAAATTGTGACTCACATAGATATATCTGAAAATTTCCTTTTTCAAGAGAAACCAAGTTGAAAACTGAACTTGTGTGCACGAAAAGAACATATGCGTCAGTTCTAACATGTCTGGCGTCTCTTCTGCCCTCTACACTTATGTTTTCTGTTCACGGGTCGACTGTGTTGGGTGTAGACCAACCAGCTATCCTTTTATTGATTCCGCTTCCTTTCGTAACATTTTTTTTTTCAGAAGTTGAATAGAACTTTCCCGATGTCAGCCTACGAAGATTTGCTCACAAAAGTTACAGCACCGACACTTACCACAGAAAACTGGGAAGGAATTCTTGGGTTCTGTGATATGGTAACAGTAAAAGTTTTGTTAAATACCATATTTAAAACCAAATTTCAGATCAATAAAGATTATGAGGGTCAAAAAACTGGATTGAAGGCTCTTCGTAAGCGACTAAACAACCGTGACCCACATGTAGTTCTTCTTGCCGTTTCTGTTCTCGACTCATGTTGGGCAAATTGTCAAGAACGATTCAGAAAAGAAGTTTCGTCTGCTCAGTTCATCAATGAACTCAAAGCACTTTGCACTTCGGTGAGTGTTTCATTGCTCGTCGATGTATATTTCCAATGTTTCTACAGAGTCAGCGTCAAGTTGCTGAAAAAATG</canonical>
            <polymorphic>ACGTTCGCGTTGAAGTACTTTGTTATGAAATACAGGTTGCGAAAATTGTCTTTGTTCTGGAAAAAACAAACTGCTTCTTTTTTGTTGTGCATATTGATTTCCATGGTTCCGCTGTGTGGTGCCAAGCTTCGTGGCACATGCGTTTTCGCAATTTGTTCTTTCAAACTAAAGTTTTTTTCAGTTAACTGCTGTTGCGATTGCTCGCTTATTCGATCGATCTTCAACCTCGTGACTGAAAGTTCGCTGTAACAATGAAGGTTCGTTTTCTCATTAGTGTTGTCTATATTCGCCGGTTGATCGATATTCCATTCTGTCAAACAAATATTCTTTTGCGTTTTTTTTTGTAAATTGTGACTCACATAGATATATCTGAAAATTTCCTTTTTCAAGAGAAACCAAGTTGAAAACTGAACTTGTGTGCACGAAAAGAACATATGCGTCAGTTCTAACATGTCTGGCGTCTCTTCTGCCCTCTACACTTATGTTTTCTGTTCACGGGYCGACTGTGTTGGGTGTAGACCAACCAGCTATCCTTTTATTGATTCCGCTTCCTTTCGTAACATTTTTTTTTTCAGAAGTTGAATAGAACTTTCCCGATGTCAGCCTACGAAGATTTGCTCACAAAAGTTACAGCACCGACACTTACCACAGAAAACTGGGAAGGAATTCTTGGGTTCTGTGATATGGTAACAGTAAAAGTTTTGTTAAATACCATATTTAAAACCAAATTTCAGATCAATAAAGATTATGAGGGTCAAAAAACTGGATTGAAGGCTCTTCGTAAGCGACTAAACAACCGTGACCCACATGTAGTTCTTCTTGCCGTTTCTGTTCTCGACTCATGTTGGGCAAATTGTCAAGAACGATTCAGAAAAGAAGTTTCGTCTGCTCAGTTCATCAATGAACTCAAAGCACTTTGCACTTCGGTGAGTGTTTCATTGCTCGTCGATGTATATTTCCAATGTTTCTACAGAGTCAGCGTCAAGTTGCTGAAAAAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 484 16</canonical_bands>
                <polymorphic_bands>516 484</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>335 211 202 111 84 53 4</canonical_bands>
                <polymorphic_bands>537 211 111 84 53 4</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>499 318 183</canonical_bands>
                <polymorphic_bands>817 183</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>483 237 183 73 16 8</canonical_bands>
                <polymorphic_bands>483 237 183 73 24</polymorphic_bands>
            </assay>
            <assay>
                <site>GTCGAC</site>
                <isoschizomers>
                    <enzyme>SalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGAGAAACCAAGTTGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CTGTAACTTTTGTGAGCAAATCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAAGAGAAACCAAGTTGAAAACTGAACTTGTGTGCACGAAAAGAACATATGCGTCAGTTCTAACATGTCTGGCGTCTCTTCTGCCCTCTACACTTATGTTTTCTGTTCACGGGTCGACTGTGTTGGGTGTAGACCAACCAGCTATCCTTTTATTGATTCCGCTTCCTTTCGTAACATTTTTTTTTTCAGAAGTTGAATAGAACTTTCCCGATGTCAGCCTACGAAGATTTGCTCACAAAAGTTACAG</canonical_amplicon>
		<polymorphic_amplicon>CAAGAGAAACCAAGTTGAAAACTGAACTTGTGTGCACGAAAAGAACATATGCGTCAGTTCTAACATGTCTGGCGTCTCTTCTGCCCTCTACACTTATGTTTTCTGTTCACGGGYCGACTGTGTTGGGTGTAGACCAACCAGCTATCCTTTTATTGATTCCGCTTCCTTTCGTAACATTTTTTTTTTCAGAAGTTGAATAGAACTTTCCCGATGTCAGCCTACGAAGATTTGCTCACAAAAGTTACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31766</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>285060</contig_pos>
        <strand>+</strand>
        <context>TTTTATAGAC[A/G]CACCTTTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACCACCTGAAATTCAAGAAATAATGCTCCACGGCGTTGGTTTTATAGAC</left_flank>
        <right_flank>CACCTTTTGAATTTGAACTGCAAGTTCTCTGGTTGGGGAAAGAATAAGAG</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTAATGTATCGTAGAGATCGATGAGAGTATCGAACTTCCATTCTTCTCGATCAACAGCCACAAAGAACTGCTTGATACCTTCGAGAGTGAGCTCGTCGCGTTTGACTAGGATTCGAATTGGGTCTGTCATGAATTTACTCGTCATTTCGAGAATTTCATGAGGGAGAGTAGCAGAAAGTAGAACAACTTGAGCTCCTGGAGGAAGATATCTGTAGATGTCATACAGTTGTTCTTTGAATCCTTTATTCAGCATTTCATCAGCTTCATCGAGAACCAAAAGCTTTATGGCGCGTGTACGGAGATTTCGACGACGAATCATATCGAAAACTCGACCAGGAGTACCAGATACTACATGCTGCCCATAGTCCAACTTTCTGATATCTTCACCTAAGTTGGTGCCACCAATGCAAGCATGACATTGCACATTCATGTAGTCTCCAAGTGCCAAGACCACCTGAAATTCAAGAAATAATGCTCCACGGCGTTGGTTTTATAGACGCACCTTTTGAATTTGAACTGCAAGTTCTCTGGTTGGGGAAAGAATAAGAGCTTGAGTCTCTCTGACTTGTGTATCCAGTGATTGTAAAACAGAAATCGAAAACGTAGCAGTTTTTCCTGTTCCCGACTGAGCTTGTGCAATAACATCGCGAGCTTTAAGAATGGCTGGAATCGCTCGCTGTTGGATCGCAGACGGCTTTTCGAATCCGTATGCGTATATTCCACGGAGGAGCTCTTCCCGCAGCCCCATCTTATCAAAAGTGGGAACTACATTCACTTCTTCTGATGACTCGAATTCCACTGACGCCATGTCACTCTTTTCTTGTTTCTTCCCATCAGACATTTTTTTCGGAGTTCTGTGATAGATCATTGATTTACCAAAACGATTTTTCGCTTTTTTCGATAAGTTTTCCGAAGTGGCACGGCAACAAAGGAGGGAGCGCAGTAGAATAAGGGAACGATGAACAGAAATAGTTTAAACTTCATTGTACCATATACAAT</canonical>
            <polymorphic>GTTAATGTATCGTAGAGATCGATGAGAGTATCGAACTTCCATTCTTCTCGATCAACAGCCACAAAGAACTGCTTGATACCTTCGAGAGTGAGCTCGTCGCGTTTGACTAGGATTCGAATTGGGTCTGTCATGAATTTACTCGTCATTTCGAGAATTTCATGAGGGAGAGTAGCAGAAAGTAGAACAACTTGAGCTCCTGGAGGAAGATATCTGTAGATGTCATACAGTTGTTCTTTGAATCCTTTATTCAGCATTTCATCAGCTTCATCGAGAACCAAAAGCTTTATGGCGCGTGTACGGAGATTTCGACGACGAATCATATCGAAAACTCGACCAGGAGTACCAGATACTACATGCTGCCCATAGTCCAACTTTCTGATATCTTCACCTAAGTTGGTGCCACCAATGCAAGCATGACATTGCACATTCATGTAGTCTCCAAGTGCCAAGACCACCTGAAATTCAAGAAATAATGCTCCACGGCGTTGGTTTTATAGACRCACCTTTTGAATTTGAACTGCAAGTTCTCTGGTTGGGGAAAGAATAAGAGCTTGAGTCTCTCTGACTTGTGTATCCAGTGATTGTAAAACAGAAATCGAAAACGTAGCAGTTTTTCCTGTTCCCGACTGAGCTTGTGCAATAACATCGCGAGCTTTAAGAATGGCTGGAATCGCTCGCTGTTGGATCGCAGACGGCTTTTCGAATCCGTATGCGTATATTCCACGGAGGAGCTCTTCCCGCAGCCCCATCTTATCAAAAGTGGGAACTACATTCACTTCTTCTGATGACTCGAATTCCACTGACGCCATGTCACTCTTTTCTTGTTTCTTCCCATCAGACATTTTTTTCGGAGTTCTGTGATAGATCATTGATTTACCAAAACGATTTTTCGCTTTTTTCGATAAGTTTTCCGAAGTGGCACGGCAACAAAGGAGGGAGCGCAGTAGAATAAGGGAACGATGAACAGAAATAGTTTAAACTTCATTGTACCATATACAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCCAACTTTCTGATATCTTCA</pcr_primer_p1>
		<pcr_primer_p2>CTACGTTTTCGATTTCTGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AGTCCAACTTTCTGATATCTTCACCTAAGTTGGTGCCACCAATGCAAGCATGACATTGCACATTCATGTAGTCTCCAAGTGCCAAGACCACCTGAAATTCAAGAAATAATGCTCCACGGCGTTGGTTTTATAGACGCACCTTTTGAATTTGAACTGCAAGTTCTCTGGTTGGGGAAAGAATAAGAGCTTGAGTCTCTCTGACTTGTGTATCCAGTGATTGTAAAACAGAAATCGAAAACGTAG</canonical_amplicon>
		<polymorphic_amplicon>AGTCCAACTTTCTGATATCTTCACCTAAGTTGGTGCCACCAATGCAAGCATGACATTGCACATTCATGTAGTCTCCAAGTGCCAAGACCACCTGAAATTCAAGAAATAATGCTCCACGGCGTTGGTTTTATAGACRCACCTTTTGAATTTGAACTGCAAGTTCTCTGGTTGGGGAAAGAATAAGAGCTTGAGTCTCTCTGACTTGTGTATCCAGTGATTGTAAAACAGAAATCGAAAACGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31767</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>286417</contig_pos>
        <strand>+</strand>
        <context>CTCTCTGTAA[A/G]TAGCAAAGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATCTTGCTGGGAAGAAGGAGCAGAGAAAGAGCTTCCGAGCTCTCTGTAA</left_flank>
        <right_flank>TAGCAAAGATTTTCAGATAAAAAATAATATGAATGAGCTTACTGTGCTTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGAACTGCGCGCTGCGACCAAATACAGAAAGTGTTAGATGTCATTTTTAAGCGAAGTTTGGAAAGGGGACAAATATAGAATTTTAGGGGAATGAAACATTTAGATGTTTAGAAATTCAAAAGGAGAAAAAAGTGGCAGCGAGAAGCAAAAGAATACCGCAAAAGAAGTTTAGAAAAGATGGCCGAAGATGAGTCCGATCAGAAGAGCGGCAACTGCAATCAGGACTACTTGCAACGTTGGGAAGGCTCCCTCCACGAGAGCGCCATCCGATTGGTTTTGCTGTAGCTTTCGATTTTTCTGAAATCACATTATATTACAAGACATTGTCAATTGTTTATTACCTTGAGCATAACTTCGATTTCCTGCTCCAATCCATGAACTTTCTTCTGCAACTCCTCCTTCTCGTCAATTGTCGACTTCAGAGATTTACGAAGGGATGCGACGGTTCCATCTTGCTGGGAAGAAGGAGCAGAGAAAGAGCTTCCGAGCTCTCTGTAAATAGCAAAGATTTTCAGATAAAAAATAATATGAATGAGCTTACTGTGCTTGTCCAGCAGACGCAAATGTTTCTTCGTTACCGTTGACAGTGAACGTTTTGTTGTCGTCTCCAGAAGCTGGATTTTTCTTATCCACGAAAGTGACCATCAGCTTACTGTAAGTCAACTCCGCTGGATCTACAATCTTCCAAATAGACTCCAAGTCTTGGAGATCTTCAGCTGGAGCAACACACGATTGAACCATGAACTTGTGACGACCAGCGTCAGTTGGAATTCCTTCGAGAGGTTGCAACATAACTGTTATCTGCTTTGATTCTCCATTTTTAAGAAGACCTATGAATATTCATGTAAAAAAGTTAATGACAAATTATCTTACCAGAGTTGGGACGGACGCAGTATTGCTTTGGGGCAGTAGTCTTGACTTTGAAGCAGACCGGATTCGCAGTTATGTTTTTAAGTGTCATGTGTGCGGTGACAACATCGGAGAACGGACCAGTGAAAA</canonical>
            <polymorphic>ACGAACTGCGCGCTGCGACCAAATACAGAAAGTGTTAGATGTCATTTTTAAGCGAAGTTTGGAAAGGGGACAAATATAGAATTTTAGGGGAATGAAACATTTAGATGTTTAGAAATTCAAAAGGAGAAAAAAGTGGCAGCGAGAAGCAAAAGAATACCGCAAAAGAAGTTTAGAAAAGATGGCCGAAGATGAGTCCGATCAGAAGAGCGGCAACTGCAATCAGGACTACTTGCAACGTTGGGAAGGCTCCCTCCACGAGAGCGCCATCCGATTGGTTTTGCTGTAGCTTTCGATTTTTCTGAAATCACATTATATTACAAGACATTGTCAATTGTTTATTACCTTGAGCATAACTTCGATTTCCTGCTCCAATCCATGAACTTTCTTCTGCAACTCCTCCTTCTCGTCAATTGTCGACTTCAGAGATTTACGAAGGGATGCGACGGTTCCATCTTGCTGGGAAGAAGGAGCAGAGAAAGAGCTTCCGAGCTCTCTGTAARTAGCAAAGATTTTCAGATAAAAAATAATATGAATGAGCTTACTGTGCTTGTCCAGCAGACGCAAATGTTTCTTCGTTACCGTTGACAGTGAACGTTTTGTTGTCGTCTCCAGAAGCTGGATTTTTCTTATCCACGAAAGTGACCATCAGCTTACTGTAAGTCAACTCCGCTGGATCTACAATCTTCCAAATAGACTCCAAGTCTTGGAGATCTTCAGCTGGAGCAACACACGATTGAACCATGAACTTGTGACGACCAGCGTCAGTTGGAATTCCTTCGAGAGGTTGCAACATAACTGTTATCTGCTTTGATTCTCCATTTTTAAGAAGACCTATGAATATTCATGTAAAAAAGTTAATGACAAATTATCTTACCAGAGTTGGGACGGACGCAGTATTGCTTTGGGGCAGTAGTCTTGACTTTGAAGCAGACCGGATTCGCAGTTATGTTTTTAAGTGTCATGTGTGCGGTGACAACATCGGAGAACGGACCAGTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGTCGACTTCAGAGATTTAC</pcr_primer_p1>
		<pcr_primer_p2>TACAGTAAGCTGATGGTCACTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTGTCGACTTCAGAGATTTACGAAGGGATGCGACGGTTCCATCTTGCTGGGAAGAAGGAGCAGAGAAAGAGCTTCCGAGCTCTCTGTAAATAGCAAAGATTTTCAGATAAAAAATAATATGAATGAGCTTACTGTGCTTGTCCAGCAGACGCAAATGTTTCTTCGTTACCGTTGACAGTGAACGTTTTGTTGTCGTCTCCAGAAGCTGGATTTTTCTTATCCACGAAAGTGACCATCAGCTTACTGTA</canonical_amplicon>
		<polymorphic_amplicon>AATTGTCGACTTCAGAGATTTACGAAGGGATGCGACGGTTCCATCTTGCTGGGAAGAAGGAGCAGAGAAAGAGCTTCCGAGCTCTCTGTAARTAGCAAAGATTTTCAGATAAAAAATAATATGAATGAGCTTACTGTGCTTGTCCAGCAGACGCAAATGTTTCTTCGTTACCGTTGACAGTGAACGTTTTGTTGTCGTCTCCAGAAGCTGGATTTTTCTTATCCACGAAAGTGACCATCAGCTTACTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31768</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>332374</contig_pos>
        <strand>+</strand>
        <context>CGACTGAGCC[A/C]CSSSGGTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGAACTTGTGGGACGATTATTGAAGGTGCGGCGCTGCTATCGACTGAGCC</left_flank>
        <right_flank>CGCCGGTGAAGCTGGCTCCTGGACGTTTCAGAACCCGACAGTTCAGAACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAAAAAAACTGAAAACTGAAGAAAAATGCCTCGTTTTTCGAATGCTCTATTCAGGATTCAGAATCTAGAGCTCTCATTCTCCATTAATTTCTCCCACGCCTACACTCTTCTTCTTCACAAAATCAGGTGCCTGTATTGGTGGATCTCATTTCTCGCACCTTCCAGTAACAGTGCAAAGTGACAGGTCATGCCCGGTCACCTGTTGTACTTTATGAGTGCTAACGAAGAGTGTTGATAGCTGAAAGTCTGAAATTTCGTACGATACAAGAAACAACCGTGGGAACTTTGAAAATTACGAGGATGGAAAAGGATGGGAAAGTTCATTCGGTTTGAAGAATGTCGATTTTTGAAAGAAATTAAGGGGTGAGGAGTTTCAAAATTGTAAGATAGGAGAACATGAAAAAAAAACTATCTCGGAACTTCGTTCATATAAGCCTCTCGAAGAGTTGAACTTGTGGGACGATTATTGAAGGTGCGGCGCTGCTATCGACTGAGCCACGCCGGTGAAGCTGGCTCCTGGACGTTTCAGAACCCGACAGTTCAGAACCCGACGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTTTTGTATAGTGGTTTTCGCGCACCAGATGAGCATTGCTCAATTCAATTTTGTGTTTTTCTGCTTTTTTGTTCATTCTCATCTACCGTACTCCAAATAATGATAGGTTCACACTGGGATTCTCTCAAAAAATCGAAAAAGTTGAACTTTTAAAAAACGATGTCATTTATAAAACCATTCAAAATGAGACTTCTATTCGCCGGAAAAATTATTGCGTACTTCTAGACGTCGTTCTTGAAAAGTTCAATTTTTTTTCGATTTTTTGAGAGATACCCAGTGTGAACCTATCATTATTTGGAGTACGGTAGATGAGAATGAATAAAAAACAGAAAAACACAAAATTGAAGTGAGCTCATTAAGTGCGCAAAAACCACTATACAAAAATGCAGAAAAGTTCTGAAAAGTCGGGTTC</canonical>
            <polymorphic>TGAAAAAAAACTGAAAACTGAAGAAAAATGCCTCGTTTTTCGAATGCTCTATTCAGGATTCAGAATCTAGAGCTCTCATTCTCCATTAATTTCTCCCACGCCTACACTCTTCTTCTTCACAAAATCAGGTGCCTGTATTGGTGGATCTCATTTCTCGCACCTTCCAGTAACAGTGCAAAGTGACAGGTCATGCCCGGTCACCTGTTGTACTTTATGAGTGCTAACGAAGAGTGTTGATAGCTGAAAGTCTGAAATTTCGTACGATACAAGAAACAACCGTGGGAACTTTGAAAATTACGAGGATGGAAAAGGATGGGAAAGTTCATTCGGTTTGAAGAATGTCGATTTTTGAAAGAAATTAAGGGGTGAGGAGTTTCAAAATTGTAAGATAGGAGAACATGAAAAAAAAACTATCTCGGAACTTCGTTCATATAAGCCTCTCGAAGAGTTGAACTTGTGGGACGATTATTGAAGGTGCGGCGCTGCTATCGACTGAGCCMCGCCGGTGAAGCTGGCTCCTGGACGTTTCAGAACCCGACAGTTCAGAACCCGACGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTTTTGTATAGTGGTTTTCGCGCACCAGATGAGCATTGCTCAATTCAATTTTGTGTTTTTCTGCTTTTTTGTTCATTCTCATCTACCGTACTCCAAATAATGATAGGTTCACACTGGGATTCTCTCAAAAAATCGAAAAAGTTGAACTTTTAAAAAACGATGTCATTTATAAAACCATTCAAAATGAGACTTCTATTCGCCGGAAAAATTATTGCGTACTTCTAGACGTCGTTCTTGAAAAGTTCAATTTTTTTTCGATTTTTTGAGAGATACCCAGTGTGAACCTATCATTATTTGGAGTACGGTAGATGAGAATGAATAAAAAACAGAAAAACACAAAATTGAAGTGAGCTCATTAAGTGCGCAAAAACCACTATACAAAAATGCAGAAAAGTTCTGAAAAGTCGGGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACNNNNGTG</site>
                <isoschizomers>
                    <enzyme>AleI</enzyme>
                    <enzyme>OliI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>166 98 93 91 87 56 55 48 39 31 23 20 18 18 16 16 13 13 13 13 12 12 11 11 8 8 7 2 2</canonical_bands>
                <polymorphic_bands>166 98 93 91 87 56 55 48 39 31 31 20 18 18 16 16 13 13 13 13 12 12 11 11 8 7 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAATTAAGGGGTGAGGAGT</pcr_primer_p1>
		<pcr_primer_p2>CCACTATACAAAAATGCAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGAAATTAAGGGGTGAGGAGTTTCAAAATTGTAAGATAGGAGAACATGAAAAAAAAACTATCTCGGAACTTCGTTCATATAAGCCTCTCGAAGAGTTGAACTTGTGGGACGATTATTGAAGGTGCGGCGCTGCTATCGACTGAGCCACGCCGGTGAAGCTGGCTCCTGGACGTTTCAGAACCCGACAGTTCAGAACCCGACGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTTTTGTATAGTGG</canonical_amplicon>
		<polymorphic_amplicon>AGAAATTAAGGGGTGAGGAGTTTCAAAATTGTAAGATAGGAGAACATGAAAAAAAAACTATCTCGGAACTTCGTTCATATAAGCCTCTCGAAGAGTTGAACTTGTGGGACGATTATTGAAGGTGCGGCGCTGCTATCGACTGAGCCMCGCCGGTGAAGCTGGCTCCTGGACGTTTCAGAACCCGACAGTTCAGAACCCGACGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTTTTGTATAGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31769</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>332376</contig_pos>
        <strand>+</strand>
        <context>ACTGAGCCMC[C/G]SSGGTGAAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AACTTGTGGGACGATTATTGAAGGTGCGGCGCTGCTATCGACTGAGCCAC</left_flank>
        <right_flank>CCGGTGAAGCTGGCTCCTGGACGTTTCAGAACCCGACAGTTCAGAACCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAAACTGAAAACTGAAGAAAAATGCCTCGTTTTTCGAATGCTCTATTCAGGATTCAGAATCTAGAGCTCTCATTCTCCATTAATTTCTCCCACGCCTACACTCTTCTTCTTCACAAAATCAGGTGCCTGTATTGGTGGATCTCATTTCTCGCACCTTCCAGTAACAGTGCAAAGTGACAGGTCATGCCCGGTCACCTGTTGTACTTTATGAGTGCTAACGAAGAGTGTTGATAGCTGAAAGTCTGAAATTTCGTACGATACAAGAAACAACCGTGGGAACTTTGAAAATTACGAGGATGGAAAAGGATGGGAAAGTTCATTCGGTTTGAAGAATGTCGATTTTTGAAAGAAATTAAGGGGTGAGGAGTTTCAAAATTGTAAGATAGGAGAACATGAAAAAAAAACTATCTCGGAACTTCGTTCATATAAGCCTCTCGAAGAGTTGAACTTGTGGGACGATTATTGAAGGTGCGGCGCTGCTATCGACTGAGCCACGCCGGTGAAGCTGGCTCCTGGACGTTTCAGAACCCGACAGTTCAGAACCCGACGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTTTTGTATAGTGGTTTTCGCGCACCAGATGAGCATTGCTCAATTCAATTTTGTGTTTTTCTGCTTTTTTGTTCATTCTCATCTACCGTACTCCAAATAATGATAGGTTCACACTGGGATTCTCTCAAAAAATCGAAAAAGTTGAACTTTTAAAAAACGATGTCATTTATAAAACCATTCAAAATGAGACTTCTATTCGCCGGAAAAATTATTGCGTACTTCTAGACGTCGTTCTTGAAAAGTTCAATTTTTTTTCGATTTTTTGAGAGATACCCAGTGTGAACCTATCATTATTTGGAGTACGGTAGATGAGAATGAATAAAAAACAGAAAAACACAAAATTGAAGTGAGCTCATTAAGTGCGCAAAAACCACTATACAAAAATGCAGAAAAGTTCTGAAAAGTCGGGTTCTG</canonical>
            <polymorphic>AAAAAAAACTGAAAACTGAAGAAAAATGCCTCGTTTTTCGAATGCTCTATTCAGGATTCAGAATCTAGAGCTCTCATTCTCCATTAATTTCTCCCACGCCTACACTCTTCTTCTTCACAAAATCAGGTGCCTGTATTGGTGGATCTCATTTCTCGCACCTTCCAGTAACAGTGCAAAGTGACAGGTCATGCCCGGTCACCTGTTGTACTTTATGAGTGCTAACGAAGAGTGTTGATAGCTGAAAGTCTGAAATTTCGTACGATACAAGAAACAACCGTGGGAACTTTGAAAATTACGAGGATGGAAAAGGATGGGAAAGTTCATTCGGTTTGAAGAATGTCGATTTTTGAAAGAAATTAAGGGGTGAGGAGTTTCAAAATTGTAAGATAGGAGAACATGAAAAAAAAACTATCTCGGAACTTCGTTCATATAAGCCTCTCGAAGAGTTGAACTTGTGGGACGATTATTGAAGGTGCGGCGCTGCTATCGACTGAGCCACSCCGGTGAAGCTGGCTCCTGGACGTTTCAGAACCCGACAGTTCAGAACCCGACGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTTTTGTATAGTGGTTTTCGCGCACCAGATGAGCATTGCTCAATTCAATTTTGTGTTTTTCTGCTTTTTTGTTCATTCTCATCTACCGTACTCCAAATAATGATAGGTTCACACTGGGATTCTCTCAAAAAATCGAAAAAGTTGAACTTTTAAAAAACGATGTCATTTATAAAACCATTCAAAATGAGACTTCTATTCGCCGGAAAAATTATTGCGTACTTCTAGACGTCGTTCTTGAAAAGTTCAATTTTTTTTCGATTTTTTGAGAGATACCCAGTGTGAACCTATCATTATTTGGAGTACGGTAGATGAGAATGAATAAAAAACAGAAAAACACAAAATTGAAGTGAGCTCATTAAGTGCGCAAAAACCACTATACAAAAATGCAGAAAAGTTCTGAAAAGTCGGGTTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CRCCGGYG</site>
                <isoschizomers>
                    <enzyme>SgrAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAATTAAGGGGTGAGGAGT</pcr_primer_p1>
		<pcr_primer_p2>CCACTATACAAAAATGCAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGAAATTAAGGGGTGAGGAGTTTCAAAATTGTAAGATAGGAGAACATGAAAAAAAAACTATCTCGGAACTTCGTTCATATAAGCCTCTCGAAGAGTTGAACTTGTGGGACGATTATTGAAGGTGCGGCGCTGCTATCGACTGAGCCACGCCGGTGAAGCTGGCTCCTGGACGTTTCAGAACCCGACAGTTCAGAACCCGACGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTTTTGTATAGTGG</canonical_amplicon>
		<polymorphic_amplicon>AGAAATTAAGGGGTGAGGAGTTTCAAAATTGTAAGATAGGAGAACATGAAAAAAAAACTATCTCGGAACTTCGTTCATATAAGCCTCTCGAAGAGTTGAACTTGTGGGACGATTATTGAAGGTGCGGCGCTGCTATCGACTGAGCCACSCCGGTGAAGCTGGCTCCTGGACGTTTCAGAACCCGACAGTTCAGAACCCGACGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTTTTGTATAGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31770</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>332377</contig_pos>
        <strand>+</strand>
        <context>CTGAGCCMCS[C/G]SGGTGAAGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACTTGTGGGACGATTATTGAAGGTGCGGCGCTGCTATCGACTGAGCCACG</left_flank>
        <right_flank>CGGTGAAGCTGGCTCCTGGACGTTTCAGAACCCGACAGTTCAGAACCCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAACTGAAAACTGAAGAAAAATGCCTCGTTTTTCGAATGCTCTATTCAGGATTCAGAATCTAGAGCTCTCATTCTCCATTAATTTCTCCCACGCCTACACTCTTCTTCTTCACAAAATCAGGTGCCTGTATTGGTGGATCTCATTTCTCGCACCTTCCAGTAACAGTGCAAAGTGACAGGTCATGCCCGGTCACCTGTTGTACTTTATGAGTGCTAACGAAGAGTGTTGATAGCTGAAAGTCTGAAATTTCGTACGATACAAGAAACAACCGTGGGAACTTTGAAAATTACGAGGATGGAAAAGGATGGGAAAGTTCATTCGGTTTGAAGAATGTCGATTTTTGAAAGAAATTAAGGGGTGAGGAGTTTCAAAATTGTAAGATAGGAGAACATGAAAAAAAAACTATCTCGGAACTTCGTTCATATAAGCCTCTCGAAGAGTTGAACTTGTGGGACGATTATTGAAGGTGCGGCGCTGCTATCGACTGAGCCACGCCGGTGAAGCTGGCTCCTGGACGTTTCAGAACCCGACAGTTCAGAACCCGACGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTTTTGTATAGTGGTTTTCGCGCACCAGATGAGCATTGCTCAATTCAATTTTGTGTTTTTCTGCTTTTTTGTTCATTCTCATCTACCGTACTCCAAATAATGATAGGTTCACACTGGGATTCTCTCAAAAAATCGAAAAAGTTGAACTTTTAAAAAACGATGTCATTTATAAAACCATTCAAAATGAGACTTCTATTCGCCGGAAAAATTATTGCGTACTTCTAGACGTCGTTCTTGAAAAGTTCAATTTTTTTTCGATTTTTTGAGAGATACCCAGTGTGAACCTATCATTATTTGGAGTACGGTAGATGAGAATGAATAAAAAACAGAAAAACACAAAATTGAAGTGAGCTCATTAAGTGCGCAAAAACCACTATACAAAAATGCAGAAAAGTTCTGAAAAGTCGGGTTCTGA</canonical>
            <polymorphic>AAAAAAACTGAAAACTGAAGAAAAATGCCTCGTTTTTCGAATGCTCTATTCAGGATTCAGAATCTAGAGCTCTCATTCTCCATTAATTTCTCCCACGCCTACACTCTTCTTCTTCACAAAATCAGGTGCCTGTATTGGTGGATCTCATTTCTCGCACCTTCCAGTAACAGTGCAAAGTGACAGGTCATGCCCGGTCACCTGTTGTACTTTATGAGTGCTAACGAAGAGTGTTGATAGCTGAAAGTCTGAAATTTCGTACGATACAAGAAACAACCGTGGGAACTTTGAAAATTACGAGGATGGAAAAGGATGGGAAAGTTCATTCGGTTTGAAGAATGTCGATTTTTGAAAGAAATTAAGGGGTGAGGAGTTTCAAAATTGTAAGATAGGAGAACATGAAAAAAAAACTATCTCGGAACTTCGTTCATATAAGCCTCTCGAAGAGTTGAACTTGTGGGACGATTATTGAAGGTGCGGCGCTGCTATCGACTGAGCCACGSCGGTGAAGCTGGCTCCTGGACGTTTCAGAACCCGACAGTTCAGAACCCGACGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTTTTGTATAGTGGTTTTCGCGCACCAGATGAGCATTGCTCAATTCAATTTTGTGTTTTTCTGCTTTTTTGTTCATTCTCATCTACCGTACTCCAAATAATGATAGGTTCACACTGGGATTCTCTCAAAAAATCGAAAAAGTTGAACTTTTAAAAAACGATGTCATTTATAAAACCATTCAAAATGAGACTTCTATTCGCCGGAAAAATTATTGCGTACTTCTAGACGTCGTTCTTGAAAAGTTCAATTTTTTTTCGATTTTTTGAGAGATACCCAGTGTGAACCTATCATTATTTGGAGTACGGTAGATGAGAATGAATAAAAAACAGAAAAACACAAAATTGAAGTGAGCTCATTAAGTGCGCAAAAACCACTATACAAAAATGCAGAAAAGTTCTGAAAAGTCGGGTTCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>309 285 215 191</canonical_bands>
                <polymorphic_bands>594 215 191</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CRCCGGYG</site>
                <isoschizomers>
                    <enzyme>SgrAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAATTAAGGGGTGAGGAGT</pcr_primer_p1>
		<pcr_primer_p2>CCACTATACAAAAATGCAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGAAATTAAGGGGTGAGGAGTTTCAAAATTGTAAGATAGGAGAACATGAAAAAAAAACTATCTCGGAACTTCGTTCATATAAGCCTCTCGAAGAGTTGAACTTGTGGGACGATTATTGAAGGTGCGGCGCTGCTATCGACTGAGCCACGCCGGTGAAGCTGGCTCCTGGACGTTTCAGAACCCGACAGTTCAGAACCCGACGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTTTTGTATAGTGG</canonical_amplicon>
		<polymorphic_amplicon>AGAAATTAAGGGGTGAGGAGTTTCAAAATTGTAAGATAGGAGAACATGAAAAAAAAACTATCTCGGAACTTCGTTCATATAAGCCTCTCGAAGAGTTGAACTTGTGGGACGATTATTGAAGGTGCGGCGCTGCTATCGACTGAGCCACGSCGGTGAAGCTGGCTCCTGGACGTTTCAGAACCCGACAGTTCAGAACCCGACGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTTTTGTATAGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31771</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>332378</contig_pos>
        <strand>+</strand>
        <context>TGAGCCMCSS[C/G]GGTGAAGCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTTGTGGGACGATTATTGAAGGTGCGGCGCTGCTATCGACTGAGCCACGC</left_flank>
        <right_flank>GGTGAAGCTGGCTCCTGGACGTTTCAGAACCCGACAGTTCAGAACCCGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAACTGAAAACTGAAGAAAAATGCCTCGTTTTTCGAATGCTCTATTCAGGATTCAGAATCTAGAGCTCTCATTCTCCATTAATTTCTCCCACGCCTACACTCTTCTTCTTCACAAAATCAGGTGCCTGTATTGGTGGATCTCATTTCTCGCACCTTCCAGTAACAGTGCAAAGTGACAGGTCATGCCCGGTCACCTGTTGTACTTTATGAGTGCTAACGAAGAGTGTTGATAGCTGAAAGTCTGAAATTTCGTACGATACAAGAAACAACCGTGGGAACTTTGAAAATTACGAGGATGGAAAAGGATGGGAAAGTTCATTCGGTTTGAAGAATGTCGATTTTTGAAAGAAATTAAGGGGTGAGGAGTTTCAAAATTGTAAGATAGGAGAACATGAAAAAAAAACTATCTCGGAACTTCGTTCATATAAGCCTCTCGAAGAGTTGAACTTGTGGGACGATTATTGAAGGTGCGGCGCTGCTATCGACTGAGCCACGCCGGTGAAGCTGGCTCCTGGACGTTTCAGAACCCGACAGTTCAGAACCCGACGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTTTTGTATAGTGGTTTTCGCGCACCAGATGAGCATTGCTCAATTCAATTTTGTGTTTTTCTGCTTTTTTGTTCATTCTCATCTACCGTACTCCAAATAATGATAGGTTCACACTGGGATTCTCTCAAAAAATCGAAAAAGTTGAACTTTTAAAAAACGATGTCATTTATAAAACCATTCAAAATGAGACTTCTATTCGCCGGAAAAATTATTGCGTACTTCTAGACGTCGTTCTTGAAAAGTTCAATTTTTTTTCGATTTTTTGAGAGATACCCAGTGTGAACCTATCATTATTTGGAGTACGGTAGATGAGAATGAATAAAAAACAGAAAAACACAAAATTGAAGTGAGCTCATTAAGTGCGCAAAAACCACTATACAAAAATGCAGAAAAGTTCTGAAAAGTCGGGTTCTGAA</canonical>
            <polymorphic>AAAAAACTGAAAACTGAAGAAAAATGCCTCGTTTTTCGAATGCTCTATTCAGGATTCAGAATCTAGAGCTCTCATTCTCCATTAATTTCTCCCACGCCTACACTCTTCTTCTTCACAAAATCAGGTGCCTGTATTGGTGGATCTCATTTCTCGCACCTTCCAGTAACAGTGCAAAGTGACAGGTCATGCCCGGTCACCTGTTGTACTTTATGAGTGCTAACGAAGAGTGTTGATAGCTGAAAGTCTGAAATTTCGTACGATACAAGAAACAACCGTGGGAACTTTGAAAATTACGAGGATGGAAAAGGATGGGAAAGTTCATTCGGTTTGAAGAATGTCGATTTTTGAAAGAAATTAAGGGGTGAGGAGTTTCAAAATTGTAAGATAGGAGAACATGAAAAAAAAACTATCTCGGAACTTCGTTCATATAAGCCTCTCGAAGAGTTGAACTTGTGGGACGATTATTGAAGGTGCGGCGCTGCTATCGACTGAGCCACGCSGGTGAAGCTGGCTCCTGGACGTTTCAGAACCCGACAGTTCAGAACCCGACGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTTTTGTATAGTGGTTTTCGCGCACCAGATGAGCATTGCTCAATTCAATTTTGTGTTTTTCTGCTTTTTTGTTCATTCTCATCTACCGTACTCCAAATAATGATAGGTTCACACTGGGATTCTCTCAAAAAATCGAAAAAGTTGAACTTTTAAAAAACGATGTCATTTATAAAACCATTCAAAATGAGACTTCTATTCGCCGGAAAAATTATTGCGTACTTCTAGACGTCGTTCTTGAAAAGTTCAATTTTTTTTCGATTTTTTGAGAGATACCCAGTGTGAACCTATCATTATTTGGAGTACGGTAGATGAGAATGAATAAAAAACAGAAAAACACAAAATTGAAGTGAGCTCATTAAGTGCGCAAAAACCACTATACAAAAATGCAGAAAAGTTCTGAAAAGTCGGGTTCTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>309 285 216 190</canonical_bands>
                <polymorphic_bands>594 216 190</polymorphic_bands>
            </assay>
            <assay>
                <site>CRCCGGYG</site>
                <isoschizomers>
                    <enzyme>SgrAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAATTAAGGGGTGAGGAGT</pcr_primer_p1>
		<pcr_primer_p2>CCACTATACAAAAATGCAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGAAATTAAGGGGTGAGGAGTTTCAAAATTGTAAGATAGGAGAACATGAAAAAAAAACTATCTCGGAACTTCGTTCATATAAGCCTCTCGAAGAGTTGAACTTGTGGGACGATTATTGAAGGTGCGGCGCTGCTATCGACTGAGCCACGCCGGTGAAGCTGGCTCCTGGACGTTTCAGAACCCGACAGTTCAGAACCCGACGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTTTTGTATAGTGG</canonical_amplicon>
		<polymorphic_amplicon>AGAAATTAAGGGGTGAGGAGTTTCAAAATTGTAAGATAGGAGAACATGAAAAAAAAACTATCTCGGAACTTCGTTCATATAAGCCTCTCGAAGAGTTGAACTTGTGGGACGATTATTGAAGGTGCGGCGCTGCTATCGACTGAGCCACGCSGGTGAAGCTGGCTCCTGGACGTTTCAGAACCCGACAGTTCAGAACCCGACGTTTCAGAACCCGACGTTTCAGAACTTTTCTGCATTTTTGTATAGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31772</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>334534</contig_pos>
        <strand></strand>
        <context>ctgataaatt[T/G]tttatcataa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTTTCCACGGTACCTGTCAAAGGTATAAAAAAGTTTTCAACTGATAAATT</left_flank>
        <right_flank>TTTATCATAATATCAGAAATATTTTGTCAGTTGACACATTTTTGATATCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGTTTACGGTAATCATTACTCAAGTTTACTCTATGAGATCCAGGATCTTACGTCAGCTGAGAAAGATCCTTTAGCTTCAAAATTTTTTAGCTAAATAATCTGACTGGAAATGAAACGGACATCTTTTGAAATCCATTTTAATCTTTCAGTATAAGGAAAATTTCAAATTCTACCAGTAATCATAAGAACTAGAAAAGCTTCTATTTTTAGGCTTCAGTATTCTCATGGCTACGGAAACATATTGAACAGTTATGAAATAGACTTCTGAGCATTTAGAAGAGGATTCTAGTTCTTCGAAAATTTAAAGTTAATGACTCATAGATAGAAGAAGAGTCCTAAACTTGGATACACTGTACTTTTCGAAGCAGATTGGAAAATGAATGAATTAGCTCAAGAATACCGTAAAACCTATAATAGAAGAGTCCCTAACTTTTAACTTTGAGCCAATTTTCCACGGTACCTGTCAAAGGTATAAAAAAGTTTTCAACTGATAAATTTTTTATCATAATATCAGAAATATTTTGTCAGTTGACACATTTTTGATATCTTGCATAGGAATTCAGATACTTGCGCTCAATGTTGACAGTGTGGAGGCCATTACAGGTTTTGGGGTGAATATTCGAGCAACAGATCTAATCAAAGAAGGAAGAGTTCAGTTTAAAACTATGATGATCCGATACTAAAGCTCGTTGAGCACTGATACCTATAGCATGCAACAAATTTGAAAGAGATCATAAATTGAGAAAAAGTTGGAAGGTTTGCTTTGGGCTAAGACTGTAGCGTTTTGAAATCCGATTTGTGAAACTTTTAATGTTTTTGTTAAGCCTCGATTCAAGGGTCCACAGGCGAGCTGGTTGCAGAACGCCCAATGAATCCTAAATTTCTAAGAAAGTTATTCAACGATTTTAATGACAGTTGTACATTCCCTTTTGTGCCATTCTCACTCTAACCAAAACCACTCAAAAAGATTGGATTCATTTGATTTGTTCCAACAAGTC</canonical>
            <polymorphic>TCTGTTTACGGTAATCATTACTCAAGTTTACTCTATGAGATCCAGGATCTTACGTCAGCTGAGAAAGATCCTTTAGCTTCAAAATTTTTTAGCTAAATAATCTGACTGGAAATGAAACGGACATCTTTTGAAATCCATTTTAATCTTTCAGTATAAGGAAAATTTCAAATTCTACCAGTAATCATAAGAACTAGAAAAGCTTCTATTTTTAGGCTTCAGTATTCTCATGGCTACGGAAACATATTGAACAGTTATGAAATAGACTTCTGAGCATTTAGAAGAGGATTCTAGTTCTTCGAAAATTTAAAGTTAATGACTCATAGATAGAAGAAGAGTCCTAAACTTGGATACACTGTACTTTTCGAAGCAGATTGGAAAATGAATGAATTAGCTCAAGAATACCGTAAAACCTATAATAGAAGAGTCCCTAACTTTTAACTTTGAGCCAATTTTCCACGGTACCTGTCAAAGGTATAAAAAAGTTTTCAACTGATAAATTKTTTATCATAATATCAGAAATATTTTGTCAGTTGACACATTTTTGATATCTTGCATAGGAATTCAGATACTTGCGCTCAATGTTGACAGTGTGGAGGCCATTACAGGTTTTGGGGTGAATATTCGAGCAACAGATCTAATCAAAGAAGGAAGAGTTCAGTTTAAAACTATGATGATCCGATACTAAAGCTCGTTGAGCACTGATACCTATAGCATGCAACAAATTTGAAAGAGATCATAAATTGAGAAAAAGTTGGAAGGTTTGCTTTGGGCTAAGACTGTAGCGTTTTGAAATCCGATTTGTGAAACTTTTAATGTTTTTGTTAAGCCTCGATTCAAGGGTCCACAGGCGAGCTGGTTGCAGAACGCCCAATGAATCCTAAATTTCTAAGAAAGTTATTCAACGATTTTAATGACAGTTGTACATTCCCTTTTGTGCCATTCTCACTCTAACCAAAACCACTCAAAAAGATTGGATTCATTTGATTTGTTCCAACAAGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>195 162 160 133 120 82 78 63 7</canonical_bands>
                <polymorphic_bands>258 162 160 133 120 82 78 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGAATGAATTAGCTCAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCCTTCTTTGATTAGATCTGTTG</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>AAATGAATGAATTAGCTCAAGAATACCGTAAAACCTATAATAGAAGAGTCCCTAACTTTTAACTTTGAGCCAATTTTCCACGGTACCTGTCAAAGGTATAAAAAAGTTTTCAACTGATAAATTTTTTATCATAATATCAGAAATATTTTGTCAGTTGACACATTTTTGATATCTTGCATAGGAATTCAGATACTTGCGCTCAATGTTGACAGTGTGGAGGCCATTACAGGTTTTGGGGTGAATATTCGAGCAACAGATCTAATCAAAGAAGGA</canonical_amplicon>
		<polymorphic_amplicon>AAATGAATGAATTAGCTCAAGAATACCGTAAAACCTATAATAGAAGAGTCCCTAACTTTTAACTTTGAGCCAATTTTCCACGGTACCTGTCAAAGGTATAAAAAAGTTTTCAACTGATAAATTKTTTATCATAATATCAGAAATATTTTGTCAGTTGACACATTTTTGATATCTTGCATAGGAATTCAGATACTTGCGCTCAATGTTGACAGTGTGGAGGCCATTACAGGTTTTGGGGTGAATATTCGAGCAACAGATCTAATCAAAGAAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31773</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>334553</contig_pos>
        <strand></strand>
        <context>aatatcagaa[A/G]tattttgtca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGGTATAAAAAAGTTTTCAACTGATAAATTTTTTATCATAATATCAGAA</left_flank>
        <right_flank>TATTTTGTCAGTTGACACATTTTTGATATCTTGCATAGGAATTCAGATAC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCAAGTTTACTCTATGAGATCCAGGATCTTACGTCAGCTGAGAAAGATCCTTTAGCTTCAAAATTTTTTAGCTAAATAATCTGACTGGAAATGAAACGGACATCTTTTGAAATCCATTTTAATCTTTCAGTATAAGGAAAATTTCAAATTCTACCAGTAATCATAAGAACTAGAAAAGCTTCTATTTTTAGGCTTCAGTATTCTCATGGCTACGGAAACATATTGAACAGTTATGAAATAGACTTCTGAGCATTTAGAAGAGGATTCTAGTTCTTCGAAAATTTAAAGTTAATGACTCATAGATAGAAGAAGAGTCCTAAACTTGGATACACTGTACTTTTCGAAGCAGATTGGAAAATGAATGAATTAGCTCAAGAATACCGTAAAACCTATAATAGAAGAGTCCCTAACTTTTAACTTTGAGCCAATTTTCCACGGTACCTGTCAAAGGTATAAAAAAGTTTTCAACTGATAAATTTTTTATCATAATATCAGAAATATTTTGTCAGTTGACACATTTTTGATATCTTGCATAGGAATTCAGATACTTGCGCTCAATGTTGACAGTGTGGAGGCCATTACAGGTTTTGGGGTGAATATTCGAGCAACAGATCTAATCAAAGAAGGAAGAGTTCAGTTTAAAACTATGATGATCCGATACTAAAGCTCGTTGAGCACTGATACCTATAGCATGCAACAAATTTGAAAGAGATCATAAATTGAGAAAAAGTTGGAAGGTTTGCTTTGGGCTAAGACTGTAGCGTTTTGAAATCCGATTTGTGAAACTTTTAATGTTTTTGTTAAGCCTCGATTCAAGGGTCCACAGGCGAGCTGGTTGCAGAACGCCCAATGAATCCTAAATTTCTAAGAAAGTTATTCAACGATTTTAATGACAGTTGTACATTCCCTTTTGTGCCATTCTCACTCTAACCAAAACCACTCAAAAAGATTGGATTCATTTGATTTGTTCCAACAAGTCGAAACGCCGCGAATTTTAT</canonical>
            <polymorphic>ACTCAAGTTTACTCTATGAGATCCAGGATCTTACGTCAGCTGAGAAAGATCCTTTAGCTTCAAAATTTTTTAGCTAAATAATCTGACTGGAAATGAAACGGACATCTTTTGAAATCCATTTTAATCTTTCAGTATAAGGAAAATTTCAAATTCTACCAGTAATCATAAGAACTAGAAAAGCTTCTATTTTTAGGCTTCAGTATTCTCATGGCTACGGAAACATATTGAACAGTTATGAAATAGACTTCTGAGCATTTAGAAGAGGATTCTAGTTCTTCGAAAATTTAAAGTTAATGACTCATAGATAGAAGAAGAGTCCTAAACTTGGATACACTGTACTTTTCGAAGCAGATTGGAAAATGAATGAATTAGCTCAAGAATACCGTAAAACCTATAATAGAAGAGTCCCTAACTTTTAACTTTGAGCCAATTTTCCACGGTACCTGTCAAAGGTATAAAAAAGTTTTCAACTGATAAATTTTTTATCATAATATCAGAARTATTTTGTCAGTTGACACATTTTTGATATCTTGCATAGGAATTCAGATACTTGCGCTCAATGTTGACAGTGTGGAGGCCATTACAGGTTTTGGGGTGAATATTCGAGCAACAGATCTAATCAAAGAAGGAAGAGTTCAGTTTAAAACTATGATGATCCGATACTAAAGCTCGTTGAGCACTGATACCTATAGCATGCAACAAATTTGAAAGAGATCATAAATTGAGAAAAAGTTGGAAGGTTTGCTTTGGGCTAAGACTGTAGCGTTTTGAAATCCGATTTGTGAAACTTTTAATGTTTTTGTTAAGCCTCGATTCAAGGGTCCACAGGCGAGCTGGTTGCAGAACGCCCAATGAATCCTAAATTTCTAAGAAAGTTATTCAACGATTTTAATGACAGTTGTACATTCCCTTTTGTGCCATTCTCACTCTAACCAAAACCACTCAAAAAGATTGGATTCATTTGATTTGTTCCAACAAGTCGAAACGCCGCGAATTTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 400 99</canonical_bands>
                <polymorphic_bands>600 400</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGAATGAATTAGCTCAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCCTTCTTTGATTAGATCTGTTG</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>AAATGAATGAATTAGCTCAAGAATACCGTAAAACCTATAATAGAAGAGTCCCTAACTTTTAACTTTGAGCCAATTTTCCACGGTACCTGTCAAAGGTATAAAAAAGTTTTCAACTGATAAATTTTTTATCATAATATCAGAAATATTTTGTCAGTTGACACATTTTTGATATCTTGCATAGGAATTCAGATACTTGCGCTCAATGTTGACAGTGTGGAGGCCATTACAGGTTTTGGGGTGAATATTCGAGCAACAGATCTAATCAAAGAAGGA</canonical_amplicon>
		<polymorphic_amplicon>AAATGAATGAATTAGCTCAAGAATACCGTAAAACCTATAATAGAAGAGTCCCTAACTTTTAACTTTGAGCCAATTTTCCACGGTACCTGTCAAAGGTATAAAAAAGTTTTCAACTGATAAATTTTTTATCATAATATCAGAARTATTTTGTCAGTTGACACATTTTTGATATCTTGCATAGGAATTCAGATACTTGCGCTCAATGTTGACAGTGTGGAGGCCATTACAGGTTTTGGGGTGAATATTCGAGCAACAGATCTAATCAAAGAAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31774</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>349564</contig_pos>
        <strand></strand>
        <context>gtcaattttt[T/A]cactatcaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TATTCTCCTTGTTTATTTTTCCGATTTTCGTGCGTTTTCGGTCAATTTTT</left_flank>
        <right_flank>CACTATCAAAATTTTGGGGAAAAATAACAGAAAAGTAGAGGAAAACCAGT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCTTCTCTATCACTCGTATCACATTACCTGTAATACAGTTGAAATTCGATGAATAAAGTAAATGAGGTCTTAAAAACGAGGAGCCAATTTTACACTTAGCAAGAAGAAGGAAGCGTGCGAAAGAAGAGGAAGAGAGGAGAAAGCATGTGCTACGCTCTAGAGAAGAACTTGAGGAATAGGGAGCAGACAGCGAGACACTTGGATTCAATAAAAGAAGAAGAAGGCAATGCAACGTCATCCTAGTGGTGTTATTAAGAAAAATTTTATTGACCGAGAGTAAATAAATGAGCGGGAATTGGTATGTTAGATAAGAATGGTTCTCGCTTTCATAATTTGCAAAAAAAACAGGACAATTAATACTTAGTAAGAAACATTATTCTGGTACAAAGAAAATCGGAGCTGTGGAAGAAGGTCCCACAACGACCACTACCGTAACCTAAAAAGTTTTATTCTCCTTGTTTATTTTTCCGATTTTCGTGCGTTTTCGGTCAATTTTTTCACTATCAAAATTTTGGGGAAAAATAACAGAAAAGTAGAGGAAAACCAGTGGAAATCGAGACAATAATTACGGAAAATATTTAGAAATGTTTATAGGTTACGGTAGTTGCCACTTTCGGCCACGGTCATCGGCGTTTCTCTTCCACAGCTCCGATTTTTCGTTTCAGAATAATAAGTTGTGTTTAATCTTCTTCATATTTAATTTCTTTTAAAGAGGTTCCAATTCTCGGAAAAGATTCGAAATGTGTCAGAAAAGGCAACAGCAGCCACCAAATTTAGTAGAAACAACAATTTTTATTAATTCTTGGTCAAAGCACAAGAAAGAAAAAGAAAAAAGAAACTAATCAAGAATATGATCGATAGAATCCAATTGAAAAAAGAATCTATAGATTAATCCCGATAGACATGGTTGGCAGAACACAGAATAGACAGAAAGGGAAAACAGGTTGGGGGGGTACGCACTTCAAGGACGTACATAATTTTAAAGGCATGCCACGCGG</canonical>
            <polymorphic>TTGCTTCTCTATCACTCGTATCACATTACCTGTAATACAGTTGAAATTCGATGAATAAAGTAAATGAGGTCTTAAAAACGAGGAGCCAATTTTACACTTAGCAAGAAGAAGGAAGCGTGCGAAAGAAGAGGAAGAGAGGAGAAAGCATGTGCTACGCTCTAGAGAAGAACTTGAGGAATAGGGAGCAGACAGCGAGACACTTGGATTCAATAAAAGAAGAAGAAGGCAATGCAACGTCATCCTAGTGGTGTTATTAAGAAAAATTTTATTGACCGAGAGTAAATAAATGAGCGGGAATTGGTATGTTAGATAAGAATGGTTCTCGCTTTCATAATTTGCAAAAAAAACAGGACAATTAATACTTAGTAAGAAACATTATTCTGGTACAAAGAAAATCGGAGCTGTGGAAGAAGGTCCCACAACGACCACTACCGTAACCTAAAAAGTTTTATTCTCCTTGTTTATTTTTCCGATTTTCGTGCGTTTTCGGTCAATTTTTWCACTATCAAAATTTTGGGGAAAAATAACAGAAAAGTAGAGGAAAACCAGTGGAAATCGAGACAATAATTACGGAAAATATTTAGAAATGTTTATAGGTTACGGTAGTTGCCACTTTCGGCCACGGTCATCGGCGTTTCTCTTCCACAGCTCCGATTTTTCGTTTCAGAATAATAAGTTGTGTTTAATCTTCTTCATATTTAATTTCTTTTAAAGAGGTTCCAATTCTCGGAAAAGATTCGAAATGTGTCAGAAAAGGCAACAGCAGCCACCAAATTTAGTAGAAACAACAATTTTTATTAATTCTTGGTCAAAGCACAAGAAAGAAAAAGAAAAAAGAAACTAATCAAGAATATGATCGATAGAATCCAATTGAAAAAAGAATCTATAGATTAATCCCGATAGACATGGTTGGCAGAACACAGAATAGACAGAAAGGGAAAACAGGTTGGGGGGGTACGCACTTCAAGGACGTACATAATTTTAAAGGCATGCCACGCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGGTTCTCGCTTTCATAAT</pcr_primer_p1>
		<pcr_primer_p2>CGAGAATTGGAACCTCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>415</pcr_amplicon_size>
		<canonical_amplicon>AATGGTTCTCGCTTTCATAATTTGCAAAAAAAACAGGACAATTAATACTTAGTAAGAAACATTATTCTGGTACAAAGAAAATCGGAGCTGTGGAAGAAGGTCCCACAACGACCACTACCGTAACCTAAAAAGTTTTATTCTCCTTGTTTATTTTTCCGATTTTCGTGCGTTTTCGGTCAATTTTTTCACTATCAAAATTTTGGGGAAAAATAACAGAAAAGTAGAGGAAAACCAGTGGAAATCGAGACAATAATTACGGAAAATATTTAGAAATGTTTATAGGTTACGGTAGTTGCCACTTTCGGCCACGGTCATCGGCGTTTCTCTTCCACAGCTCCGATTTTTCGTTTCAGAATAATAAGTTGTGTTTAATCTTCTTCATATTTAATTTCTTTTAAAGAGGTTCCAATTCTCG</canonical_amplicon>
		<polymorphic_amplicon>AATGGTTCTCGCTTTCATAATTTGCAAAAAAAACAGGACAATTAATACTTAGTAAGAAACATTATTCTGGTACAAAGAAAATCGGAGCTGTGGAAGAAGGTCCCACAACGACCACTACCGTAACCTAAAAAGTTTTATTCTCCTTGTTTATTTTTCCGATTTTCGTGCGTTTTCGGTCAATTTTTWCACTATCAAAATTTTGGGGAAAAATAACAGAAAAGTAGAGGAAAACCAGTGGAAATCGAGACAATAATTACGGAAAATATTTAGAAATGTTTATAGGTTACGGTAGTTGCCACTTTCGGCCACGGTCATCGGCGTTTCTCTTCCACAGCTCCGATTTTTCGTTTCAGAATAATAAGTTGTGTTTAATCTTCTTCATATTTAATTTCTTTTAAAGAGGTTCCAATTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31775</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>349653</contig_pos>
        <strand></strand>
        <context>atttagaaat[G/C]tttataggtt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AGGAAAACCAGTGGAAATCGAGACAATAATTACGGAAAATATTTAGAAAT</left_flank>
        <right_flank>TTTATAGGTTACGGTAGTTGCCACTTTCGGCCACGGTCATCGGCGTTTCT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTACACTTAGCAAGAAGAAGGAAGCGTGCGAAAGAAGAGGAAGAGAGGAGAAAGCATGTGCTACGCTCTAGAGAAGAACTTGAGGAATAGGGAGCAGACAGCGAGACACTTGGATTCAATAAAAGAAGAAGAAGGCAATGCAACGTCATCCTAGTGGTGTTATTAAGAAAAATTTTATTGACCGAGAGTAAATAAATGAGCGGGAATTGGTATGTTAGATAAGAATGGTTCTCGCTTTCATAATTTGCAAAAAAAACAGGACAATTAATACTTAGTAAGAAACATTATTCTGGTACAAAGAAAATCGGAGCTGTGGAAGAAGGTCCCACAACGACCACTACCGTAACCTAAAAAGTTTTATTCTCCTTGTTTATTTTTCCGATTTTCGTGCGTTTTCGGTCAATTTTTTCACTATCAAAATTTTGGGGAAAAATAACAGAAAAGTAGAGGAAAACCAGTGGAAATCGAGACAATAATTACGGAAAATATTTAGAAATGTTTATAGGTTACGGTAGTTGCCACTTTCGGCCACGGTCATCGGCGTTTCTCTTCCACAGCTCCGATTTTTCGTTTCAGAATAATAAGTTGTGTTTAATCTTCTTCATATTTAATTTCTTTTAAAGAGGTTCCAATTCTCGGAAAAGATTCGAAATGTGTCAGAAAAGGCAACAGCAGCCACCAAATTTAGTAGAAACAACAATTTTTATTAATTCTTGGTCAAAGCACAAGAAAGAAAAAGAAAAAAGAAACTAATCAAGAATATGATCGATAGAATCCAATTGAAAAAAGAATCTATAGATTAATCCCGATAGACATGGTTGGCAGAACACAGAATAGACAGAAAGGGAAAACAGGTTGGGGGGGTACGCACTTCAAGGACGTACATAATTTTAAAGGCATGCCACGCGGCAAGACGAGATGTTGTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCCAGGTCAACTTTCGAGGCCTTGCGTCAAA</canonical>
            <polymorphic>TTTTACACTTAGCAAGAAGAAGGAAGCGTGCGAAAGAAGAGGAAGAGAGGAGAAAGCATGTGCTACGCTCTAGAGAAGAACTTGAGGAATAGGGAGCAGACAGCGAGACACTTGGATTCAATAAAAGAAGAAGAAGGCAATGCAACGTCATCCTAGTGGTGTTATTAAGAAAAATTTTATTGACCGAGAGTAAATAAATGAGCGGGAATTGGTATGTTAGATAAGAATGGTTCTCGCTTTCATAATTTGCAAAAAAAACAGGACAATTAATACTTAGTAAGAAACATTATTCTGGTACAAAGAAAATCGGAGCTGTGGAAGAAGGTCCCACAACGACCACTACCGTAACCTAAAAAGTTTTATTCTCCTTGTTTATTTTTCCGATTTTCGTGCGTTTTCGGTCAATTTTTTCACTATCAAAATTTTGGGGAAAAATAACAGAAAAGTAGAGGAAAACCAGTGGAAATCGAGACAATAATTACGGAAAATATTTAGAAATSTTTATAGGTTACGGTAGTTGCCACTTTCGGCCACGGTCATCGGCGTTTCTCTTCCACAGCTCCGATTTTTCGTTTCAGAATAATAAGTTGTGTTTAATCTTCTTCATATTTAATTTCTTTTAAAGAGGTTCCAATTCTCGGAAAAGATTCGAAATGTGTCAGAAAAGGCAACAGCAGCCACCAAATTTAGTAGAAACAACAATTTTTATTAATTCTTGGTCAAAGCACAAGAAAGAAAAAGAAAAAAGAAACTAATCAAGAATATGATCGATAGAATCCAATTGAAAAAAGAATCTATAGATTAATCCCGATAGACATGGTTGGCAGAACACAGAATAGACAGAAAGGGAAAACAGGTTGGGGGGGTACGCACTTCAAGGACGTACATAATTTTAAAGGCATGCCACGCGGCAAGACGAGATGTTGTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCCAGGTCAACTTTCGAGGCCTTGCGTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGGTTCTCGCTTTCATAAT</pcr_primer_p1>
		<pcr_primer_p2>CGAGAATTGGAACCTCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>415</pcr_amplicon_size>
		<canonical_amplicon>AATGGTTCTCGCTTTCATAATTTGCAAAAAAAACAGGACAATTAATACTTAGTAAGAAACATTATTCTGGTACAAAGAAAATCGGAGCTGTGGAAGAAGGTCCCACAACGACCACTACCGTAACCTAAAAAGTTTTATTCTCCTTGTTTATTTTTCCGATTTTCGTGCGTTTTCGGTCAATTTTTTCACTATCAAAATTTTGGGGAAAAATAACAGAAAAGTAGAGGAAAACCAGTGGAAATCGAGACAATAATTACGGAAAATATTTAGAAATGTTTATAGGTTACGGTAGTTGCCACTTTCGGCCACGGTCATCGGCGTTTCTCTTCCACAGCTCCGATTTTTCGTTTCAGAATAATAAGTTGTGTTTAATCTTCTTCATATTTAATTTCTTTTAAAGAGGTTCCAATTCTCG</canonical_amplicon>
		<polymorphic_amplicon>AATGGTTCTCGCTTTCATAATTTGCAAAAAAAACAGGACAATTAATACTTAGTAAGAAACATTATTCTGGTACAAAGAAAATCGGAGCTGTGGAAGAAGGTCCCACAACGACCACTACCGTAACCTAAAAAGTTTTATTCTCCTTGTTTATTTTTCCGATTTTCGTGCGTTTTCGGTCAATTTTTTCACTATCAAAATTTTGGGGAAAAATAACAGAAAAGTAGAGGAAAACCAGTGGAAATCGAGACAATAATTACGGAAAATATTTAGAAATSTTTATAGGTTACGGTAGTTGCCACTTTCGGCCACGGTCATCGGCGTTTCTCTTCCACAGCTCCGATTTTTCGTTTCAGAATAATAAGTTGTGTTTAATCTTCTTCATATTTAATTTCTTTTAAAGAGGTTCCAATTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31776</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>371606</contig_pos>
        <strand>+</strand>
        <context>TTGTCAGAAA[A/T]TTTTTTTWAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTCGATCATAAGATGAATCACATTTGCGGGAGAAAAATCTTGTCAGAAA</left_flank>
        <right_flank>TTTTTTTTAAATAAATGCTTTAGGTGGTTCGAATACATTGCATCGTCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGGCGAATTATCCCAGGAAGTTGTTTTTGAGGTGAAATTCAATAAATTTTTCTCGAAATGTTTCGAAAAATCAGCTACACGGGCCGACCGGGCCGGGTCACCCGGTCGGCCCGGATTTTGACAAGTATGGGGACATTAGAGAGGGATGGGAAAGTAACATTCAGATGTGTAAAAGGGACGCTTTTCGAACACGCAACGGCTCAATCTATTGAAACAGATGTATGGCTAATTGTGAACCTCGCACTGAAAGCAGGGACGGGTTGAGCAGGTGAAAAGAGCATGGAGTCTAGTAATGCAGGCTTAATTAAAGGCTTCCGATTAGAAACAGAACGCCATCAAAATATCGAGAAAATCTGATAATTGGTAAGATTAGTTCCTAATTAAGAATGGGTTTCGAGTGTGGAAAGTAATGAGTGGGTCTCAAACAAATAGAATGAATATAGAGCAGGTTCGATCATAAGATGAATCACATTTGCGGGAGAAAAATCTTGTCAGAAATTTTTTTTTAAATAAATGCTTTAGGTGGTTCGAATACATTGCATCGTCAAATAAGTCAATGATAAGTGTTCCAATGGATTATTACTTTCGAGCAAAATCTGACGATGGTCCGTTATACAGCCGTTTTCCGGCAAGTTCCGTGTAGAACTTCGCCAATATCACAACCAACTTCTGACAAAAAGTTACAAGCTGACAGCCGGGATAGTAGTCGAGTAGCTAAGCCGACATCCCAGTTAATTTAAAATTAATGGTTTGTCATGTTTTTATCGTGACTGAAACTATTTAAACATGAATGTGAATCCAAAGTATCGGATAGAAGTATATTGCATTTGAGCATTGAATTGTTCACTTCAAGCTCATAAGTGATTTGAAGCTGGCCGAATACCACATTCGTTCAAACAGAAGCCCACCCTATATGTCCACTTTGAGCACAATTACCATAGAGTTATCAAAAATTTATTAACTGATAAAGTATTGATGATATTATGATAACCATTTTAT</canonical>
            <polymorphic>AGGGCGAATTATCCCAGGAAGTTGTTTTTGAGGTGAAATTCAATAAATTTTTCTCGAAATGTTTCGAAAAATCAGCTACACGGGCCGACCGGGCCGGGTCACCCGGTCGGCCCGGATTTTGACAAGTATGGGGACATTAGAGAGGGATGGGAAAGTAACATTCAGATGTGTAAAAGGGACGCTTTTCGAACACGCAACGGCTCAATCTATTGAAACAGATGTATGGCTAATTGTGAACCTCGCACTGAAAGCAGGGACGGGTTGAGCAGGTGAAAAGAGCATGGAGTCTAGTAATGCAGGCTTAATTAAAGGCTTCCGATTAGAAACAGAACGCCATCAAAATATCGAGAAAATCTGATAATTGGTAAGATTAGTTCCTAATTAAGAATGGGTTTCGAGTGTGGAAAGTAATGAGTGGGTCTCAAACAAATAGAATGAATATAGAGCAGGTTCGATCATAAGATGAATCACATTTGCGGGAGAAAAATCTTGTCAGAAAWTTTTTTTTAAATAAATGCTTTAGGTGGTTCGAATACATTGCATCGTCAAATAAGTCAATGATAAGTGTTCCAATGGATTATTACTTTCGAGCAAAATCTGACGATGGTCCGTTATACAGCCGTTTTCCGGCAAGTTCCGTGTAGAACTTCGCCAATATCACAACCAACTTCTGACAAAAAGTTACAAGCTGACAGCCGGGATAGTAGTCGAGTAGCTAAGCCGACATCCCAGTTAATTTAAAATTAATGGTTTGTCATGTTTTTATCGTGACTGAAACTATTTAAACATGAATGTGAATCCAAAGTATCGGATAGAAGTATATTGCATTTGAGCATTGAATTGTTCACTTCAAGCTCATAAGTGATTTGAAGCTGGCCGAATACCACATTCGTTCAAACAGAAGCCCACCCTATATGTCCACTTTGAGCACAATTACCATAGAGTTATCAAAAATTTATTAACTGATAAAGTATTGATGATATTATGATAACCATTTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>455 452 48 36 9</canonical_bands>
                <polymorphic_bands>907 48 36 9</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>237 183 118 97 93 75 56 48 30 21 20 9 7 6</canonical_bands>
                <polymorphic_bands>355 183 97 93 75 56 48 30 21 20 9 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATCAAAATATCGAGAAAATC</pcr_primer_p1>
		<pcr_primer_p2>ATAATCCATTGGAACACTTATCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCATCAAAATATCGAGAAAATCTGATAATTGGTAAGATTAGTTCCTAATTAAGAATGGGTTTCGAGTGTGGAAAGTAATGAGTGGGTCTCAAACAAATAGAATGAATATAGAGCAGGTTCGATCATAAGATGAATCACATTTGCGGGAGAAAAATCTTGTCAGAAATTTTTTTTTAAATAAATGCTTTAGGTGGTTCGAATACATTGCATCGTCAAATAAGTCAATGATAAGTGTTCCAATGGATTAT</canonical_amplicon>
		<polymorphic_amplicon>CCATCAAAATATCGAGAAAATCTGATAATTGGTAAGATTAGTTCCTAATTAAGAATGGGTTTCGAGTGTGGAAAGTAATGAGTGGGTCTCAAACAAATAGAATGAATATAGAGCAGGTTCGATCATAAGATGAATCACATTTGCGGGAGAAAAATCTTGTCAGAAAWTTTTTTTTAAATAAATGCTTTAGGTGGTTCGAATACATTGCATCGTCAAATAAGTCAATGATAAGTGTTCCAATGGATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31777</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>395776</contig_pos>
        <strand></strand>
        <context>aatgtttttt[C/T]gagaaacgga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAATTTATTCAATTTCGCCAGAGTTGCAGAGATGTGCGGAATGTTTTTT</left_flank>
        <right_flank>GAGAAACGGAATCTAGAATACGGAATCAGGAATAAAATAATTTTCTCGAA</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAAAATTAGGTCGAACATGAAAATGGAAATAAGTAGAATAAGAAGAAAAAGAGATACTTTCTGAGTGACGTACTAATATAGAAGTATCAGAATGGATTTAGAGGAGATAAGTTAAATAAGAAGAGAACACCGTATTACGATGTGAATCTGCATATTCTACGCATGTTTTCAGTTGTAAGAATGTTAGTTCCAAGTGTGTGACAACTTATTTATGGATCCCAAATGGATGTTCAGGTGAATGTGTGAACGTTGATTGTGTATGCATTTTAAATCTCTCGCGATTTGAACTTGTTTAATATTTTCGTTCGAAATACATATTTATAGATATAAATTCTAATACTTCTGTTGCTTTGGGAATATGGGAATTCAGATTTAAAGGATAATTGTTTGTTACTGGAAGAGCTTCCTTTTAAAAACCTTAAATTTATTCAATTTCGCCAGAGTTGCAGAGATGTGCGGAATGTTTTTTCGAGAAACGGAATCTAGAATACGGAATCAGGAATAAAATAATTTTCTCGAAATATGGAATCTAGACAACATTTTATTCATTGGAAAGCACGGAAGCCGGAAAACGGAATCCAGAATTCGGAATAAATATATTTTTCGCGGAATCCGGAATCCCCACAGCTCTGCTCCTTAGCCATATCCAACTTGCCTACTTCCCTATCAGCCATACTATCAGTCATACTGATCGAGATAAACTTTTCTTCTTGGATTACGGTATCTAGAAAGTCCGAGAGCTATACTAAATTTATGTGGTTTTTTTATTCTCATGCTCCTGACTACCGTAATAAATTCTTTAGCATGAGAAAGATTTCCTGTTACCGTAACTCACATCGAATCATCCCAAGAATTTCCCTGGATTTCAAAAGTTCAAAACTCAAAAATGCAGGTTATCAGGAAAGTTGAGAAGAAGTGCTAAAGTTGTTATTACACTGGTCACACAGAAAACAAAGCCTTCATCGCAATA</canonical>
            <polymorphic>TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAAAATTAGGTCGAACATGAAAATGGAAATAAGTAGAATAAGAAGAAAAAGAGATACTTTCTGAGTGACGTACTAATATAGAAGTATCAGAATGGATTTAGAGGAGATAAGTTAAATAAGAAGAGAACACCGTATTACGATGTGAATCTGCATATTCTACGCATGTTTTCAGTTGTAAGAATGTTAGTTCCAAGTGTGTGACAACTTATTTATGGATCCCAAATGGATGTTCAGGTGAATGTGTGAACGTTGATTGTGTATGCATTTTAAATCTCTCGCGATTTGAACTTGTTTAATATTTTCGTTCGAAATACATATTTATAGATATAAATTCTAATACTTCTGTTGCTTTGGGAATATGGGAATTCAGATTTAAAGGATAATTGTTTGTTACTGGAAGAGCTTCCTTTTAAAAACCTTAAATTTATTCAATTTCGCCAGAGTTGCAGAGATGTGCGGAATGTTTTTTYGAGAAACGGAATCTAGAATACGGAATCAGGAATAAAATAATTTTCTCGAAATATGGAATCTAGACAACATTTTATTCATTGGAAAGCACGGAAGCCGGAAAACGGAATCCAGAATTCGGAATAAATATATTTTTCGCGGAATCCGGAATCCCCACAGCTCTGCTCCTTAGCCATATCCAACTTGCCTACTTCCCTATCAGCCATACTATCAGTCATACTGATCGAGATAAACTTTTCTTCTTGGATTACGGTATCTAGAAAGTCCGAGAGCTATACTAAATTTATGTGGTTTTTTTATTCTCATGCTCCTGACTACCGTAATAAATTCTTTAGCATGAGAAAGATTTCCTGTTACCGTAACTCACATCGAATCATCCCAAGAATTTCCCTGGATTTCAAAAGTTCAAAACTCAAAAATGCAGGTTATCAGGAAAGTTGAGAAGAAGTGCTAAAGTTGTTATTACACTGGTCACACAGAAAACAAAGCCTTCATCGCAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>295 176 163 145 132 47 42</canonical_bands>
                <polymorphic_bands>295 210 176 145 132 42</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>307 193 120 80 72 53 49 34 32 18 15 14 13</canonical_bands>
                <polymorphic_bands>307 206 120 80 72 53 49 34 32 18 15 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTCCTTTTAAAAACCTTAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTGGATATGGCTAAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCTTCCTTTTAAAAACCTTAAATTTATTCAATTTCGCCAGAGTTGCAGAGATGTGCGGAATGTTTTTTCGAGAAACGGAATCTAGAATACGGAATCAGGAATAAAATAATTTTCTCGAAATATGGAATCTAGACAACATTTTATTCATTGGAAAGCACGGAAGCCGGAAAACGGAATCCAGAATTCGGAATAAATATATTTTTCGCGGAATCCGGAATCCCCACAGCTCTGCTCCTTAGCCATATCCAACTT</canonical_amplicon>
		<polymorphic_amplicon>GCTTCCTTTTAAAAACCTTAAATTTATTCAATTTCGCCAGAGTTGCAGAGATGTGCGGAATGTTTTTTYGAGAAACGGAATCTAGAATACGGAATCAGGAATAAAATAATTTTCTCGAAATATGGAATCTAGACAACATTTTATTCATTGGAAAGCACGGAAGCCGGAAAACGGAATCCAGAATTCGGAATAAATATATTTTTCGCGGAATCCGGAATCCCCACAGCTCTGCTCCTTAGCCATATCCAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31778</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>395795</contig_pos>
        <strand></strand>
        <context>gaatctagaa[T/A]acggaatcag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CAGAGTTGCAGAGATGTGCGGAATGTTTTTTCGAGAAACGGAATCTAGAA</left_flank>
        <right_flank>ACGGAATCAGGAATAAAATAATTTTCTCGAAATATGGAATCTAGACAACA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTCTCTCTCCAAAATTAGGTCGAACATGAAAATGGAAATAAGTAGAATAAGAAGAAAAAGAGATACTTTCTGAGTGACGTACTAATATAGAAGTATCAGAATGGATTTAGAGGAGATAAGTTAAATAAGAAGAGAACACCGTATTACGATGTGAATCTGCATATTCTACGCATGTTTTCAGTTGTAAGAATGTTAGTTCCAAGTGTGTGACAACTTATTTATGGATCCCAAATGGATGTTCAGGTGAATGTGTGAACGTTGATTGTGTATGCATTTTAAATCTCTCGCGATTTGAACTTGTTTAATATTTTCGTTCGAAATACATATTTATAGATATAAATTCTAATACTTCTGTTGCTTTGGGAATATGGGAATTCAGATTTAAAGGATAATTGTTTGTTACTGGAAGAGCTTCCTTTTAAAAACCTTAAATTTATTCAATTTCGCCAGAGTTGCAGAGATGTGCGGAATGTTTTTTCGAGAAACGGAATCTAGAATACGGAATCAGGAATAAAATAATTTTCTCGAAATATGGAATCTAGACAACATTTTATTCATTGGAAAGCACGGAAGCCGGAAAACGGAATCCAGAATTCGGAATAAATATATTTTTCGCGGAATCCGGAATCCCCACAGCTCTGCTCCTTAGCCATATCCAACTTGCCTACTTCCCTATCAGCCATACTATCAGTCATACTGATCGAGATAAACTTTTCTTCTTGGATTACGGTATCTAGAAAGTCCGAGAGCTATACTAAATTTATGTGGTTTTTTTATTCTCATGCTCCTGACTACCGTAATAAATTCTTTAGCATGAGAAAGATTTCCTGTTACCGTAACTCACATCGAATCATCCCAAGAATTTCCCTGGATTTCAAAAGTTCAAAACTCAAAAATGCAGGTTATCAGGAAAGTTGAGAAGAAGTGCTAAAGTTGTTATTACACTGGTCACACAGAAAACAAAGCCTTCATCGCAATATTGCCACAAGAGACGGGTG</canonical>
            <polymorphic>CTCTCTCTCTCCAAAATTAGGTCGAACATGAAAATGGAAATAAGTAGAATAAGAAGAAAAAGAGATACTTTCTGAGTGACGTACTAATATAGAAGTATCAGAATGGATTTAGAGGAGATAAGTTAAATAAGAAGAGAACACCGTATTACGATGTGAATCTGCATATTCTACGCATGTTTTCAGTTGTAAGAATGTTAGTTCCAAGTGTGTGACAACTTATTTATGGATCCCAAATGGATGTTCAGGTGAATGTGTGAACGTTGATTGTGTATGCATTTTAAATCTCTCGCGATTTGAACTTGTTTAATATTTTCGTTCGAAATACATATTTATAGATATAAATTCTAATACTTCTGTTGCTTTGGGAATATGGGAATTCAGATTTAAAGGATAATTGTTTGTTACTGGAAGAGCTTCCTTTTAAAAACCTTAAATTTATTCAATTTCGCCAGAGTTGCAGAGATGTGCGGAATGTTTTTTCGAGAAACGGAATCTAGAAWACGGAATCAGGAATAAAATAATTTTCTCGAAATATGGAATCTAGACAACATTTTATTCATTGGAAAGCACGGAAGCCGGAAAACGGAATCCAGAATTCGGAATAAATATATTTTTCGCGGAATCCGGAATCCCCACAGCTCTGCTCCTTAGCCATATCCAACTTGCCTACTTCCCTATCAGCCATACTATCAGTCATACTGATCGAGATAAACTTTTCTTCTTGGATTACGGTATCTAGAAAGTCCGAGAGCTATACTAAATTTATGTGGTTTTTTTATTCTCATGCTCCTGACTACCGTAATAAATTCTTTAGCATGAGAAAGATTTCCTGTTACCGTAACTCACATCGAATCATCCCAAGAATTTCCCTGGATTTCAAAAGTTCAAAACTCAAAAATGCAGGTTATCAGGAAAGTTGAGAAGAAGTGCTAAAGTTGTTATTACACTGGTCACACAGAAAACAAAGCCTTCATCGCAATATTGCCACAAGAGACGGGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTCCTTTTAAAAACCTTAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTGGATATGGCTAAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCTTCCTTTTAAAAACCTTAAATTTATTCAATTTCGCCAGAGTTGCAGAGATGTGCGGAATGTTTTTTCGAGAAACGGAATCTAGAATACGGAATCAGGAATAAAATAATTTTCTCGAAATATGGAATCTAGACAACATTTTATTCATTGGAAAGCACGGAAGCCGGAAAACGGAATCCAGAATTCGGAATAAATATATTTTTCGCGGAATCCGGAATCCCCACAGCTCTGCTCCTTAGCCATATCCAACTT</canonical_amplicon>
		<polymorphic_amplicon>GCTTCCTTTTAAAAACCTTAAATTTATTCAATTTCGCCAGAGTTGCAGAGATGTGCGGAATGTTTTTTCGAGAAACGGAATCTAGAAWACGGAATCAGGAATAAAATAATTTTCTCGAAATATGGAATCTAGACAACATTTTATTCATTGGAAAGCACGGAAGCCGGAAAACGGAATCCAGAATTCGGAATAAATATATTTTTCGCGGAATCCGGAATCCCCACAGCTCTGCTCCTTAGCCATATCCAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31779</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>395866</contig_pos>
        <strand></strand>
        <context>tggaaagcac[G/A]gaagccggaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTTTCTCGAAATATGGAATCTAGACAACATTTTATTCATTGGAAAGCAC</left_flank>
        <right_flank>GAAGCCGGAAAACGGAATCCAGAATTCGGAATAAATATATTTTTCGCGGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAGTGACGTACTAATATAGAAGTATCAGAATGGATTTAGAGGAGATAAGTTAAATAAGAAGAGAACACCGTATTACGATGTGAATCTGCATATTCTACGCATGTTTTCAGTTGTAAGAATGTTAGTTCCAAGTGTGTGACAACTTATTTATGGATCCCAAATGGATGTTCAGGTGAATGTGTGAACGTTGATTGTGTATGCATTTTAAATCTCTCGCGATTTGAACTTGTTTAATATTTTCGTTCGAAATACATATTTATAGATATAAATTCTAATACTTCTGTTGCTTTGGGAATATGGGAATTCAGATTTAAAGGATAATTGTTTGTTACTGGAAGAGCTTCCTTTTAAAAACCTTAAATTTATTCAATTTCGCCAGAGTTGCAGAGATGTGCGGAATGTTTTTTCGAGAAACGGAATCTAGAATACGGAATCAGGAATAAAATAATTTTCTCGAAATATGGAATCTAGACAACATTTTATTCATTGGAAAGCACGGAAGCCGGAAAACGGAATCCAGAATTCGGAATAAATATATTTTTCGCGGAATCCGGAATCCCCACAGCTCTGCTCCTTAGCCATATCCAACTTGCCTACTTCCCTATCAGCCATACTATCAGTCATACTGATCGAGATAAACTTTTCTTCTTGGATTACGGTATCTAGAAAGTCCGAGAGCTATACTAAATTTATGTGGTTTTTTTATTCTCATGCTCCTGACTACCGTAATAAATTCTTTAGCATGAGAAAGATTTCCTGTTACCGTAACTCACATCGAATCATCCCAAGAATTTCCCTGGATTTCAAAAGTTCAAAACTCAAAAATGCAGGTTATCAGGAAAGTTGAGAAGAAGTGCTAAAGTTGTTATTACACTGGTCACACAGAAAACAAAGCCTTCATCGCAATATTGCCACAAGAGACGGGTGTCTTCTTCTCAATTTTCCCTCGAACACACACACAACTGTTTCCAGAAAAACGAGGAAGAAGAAGAACATGG</canonical>
            <polymorphic>CTGAGTGACGTACTAATATAGAAGTATCAGAATGGATTTAGAGGAGATAAGTTAAATAAGAAGAGAACACCGTATTACGATGTGAATCTGCATATTCTACGCATGTTTTCAGTTGTAAGAATGTTAGTTCCAAGTGTGTGACAACTTATTTATGGATCCCAAATGGATGTTCAGGTGAATGTGTGAACGTTGATTGTGTATGCATTTTAAATCTCTCGCGATTTGAACTTGTTTAATATTTTCGTTCGAAATACATATTTATAGATATAAATTCTAATACTTCTGTTGCTTTGGGAATATGGGAATTCAGATTTAAAGGATAATTGTTTGTTACTGGAAGAGCTTCCTTTTAAAAACCTTAAATTTATTCAATTTCGCCAGAGTTGCAGAGATGTGCGGAATGTTTTTTCGAGAAACGGAATCTAGAATACGGAATCAGGAATAAAATAATTTTCTCGAAATATGGAATCTAGACAACATTTTATTCATTGGAAAGCACRGAAGCCGGAAAACGGAATCCAGAATTCGGAATAAATATATTTTTCGCGGAATCCGGAATCCCCACAGCTCTGCTCCTTAGCCATATCCAACTTGCCTACTTCCCTATCAGCCATACTATCAGTCATACTGATCGAGATAAACTTTTCTTCTTGGATTACGGTATCTAGAAAGTCCGAGAGCTATACTAAATTTATGTGGTTTTTTTATTCTCATGCTCCTGACTACCGTAATAAATTCTTTAGCATGAGAAAGATTTCCTGTTACCGTAACTCACATCGAATCATCCCAAGAATTTCCCTGGATTTCAAAAGTTCAAAACTCAAAAATGCAGGTTATCAGGAAAGTTGAGAAGAAGTGCTAAAGTTGTTATTACACTGGTCACACAGAAAACAAAGCCTTCATCGCAATATTGCCACAAGAGACGGGTGTCTTCTTCTCAATTTTCCCTCGAACACACACACAACTGTTTCCAGAAAAACGAGGAAGAAGAAGAACATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTCCTTTTAAAAACCTTAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTGGATATGGCTAAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCTTCCTTTTAAAAACCTTAAATTTATTCAATTTCGCCAGAGTTGCAGAGATGTGCGGAATGTTTTTTCGAGAAACGGAATCTAGAATACGGAATCAGGAATAAAATAATTTTCTCGAAATATGGAATCTAGACAACATTTTATTCATTGGAAAGCACGGAAGCCGGAAAACGGAATCCAGAATTCGGAATAAATATATTTTTCGCGGAATCCGGAATCCCCACAGCTCTGCTCCTTAGCCATATCCAACTT</canonical_amplicon>
		<polymorphic_amplicon>GCTTCCTTTTAAAAACCTTAAATTTATTCAATTTCGCCAGAGTTGCAGAGATGTGCGGAATGTTTTTTCGAGAAACGGAATCTAGAATACGGAATCAGGAATAAAATAATTTTCTCGAAATATGGAATCTAGACAACATTTTATTCATTGGAAAGCACRGAAGCCGGAAAACGGAATCCAGAATTCGGAATAAATATATTTTTCGCGGAATCCGGAATCCCCACAGCTCTGCTCCTTAGCCATATCCAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31780</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>395989</contig_pos>
        <strand>+</strand>
        <context>ATACTATCAG[A/T]CATACTGATC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCCTTAGCCATATCCAACTTGCCTACTTCCCTATCAGCCATACTATCAG</left_flank>
        <right_flank>CATACTGATCGAGATAAACTTTTCTTCTTGGATTACGGTATCTAGAAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGTTCCAAGTGTGTGACAACTTATTTATGGATCCCAAATGGATGTTCAGGTGAATGTGTGAACGTTGATTGTGTATGCATTTTAAATCTCTCGCGATTTGAACTTGTTTAATATTTTCGTTCGAAATACATATTTATAGATATAAATTCTAATACTTCTGTTGCTTTGGGAATATGGGAATTCAGATTTAAAGGATAATTGTTTGTTACTGGAAGAGCTTCCTTTTAAAAACCTTAAATTTATTCAATTTCGCCAGAGTTGCAGAGATGTGCGGAATGTTTTTTCGAGAAACGGAATCTAGAATACGGAATCAGGAATAAAATAATTTTCTCGAAATATGGAATCTAGACAACATTTTATTCATTGGAAAGCACGGAAGCCGGAAAACGGAATCCAGAATTCGGAATAAATATATTTTTCGCGGAATCCGGAATCCCCACAGCTCTGCTCCTTAGCCATATCCAACTTGCCTACTTCCCTATCAGCCATACTATCAGTCATACTGATCGAGATAAACTTTTCTTCTTGGATTACGGTATCTAGAAAGTCCGAGAGCTATACTAAATTTATGTGGTTTTTTTATTCTCATGCTCCTGACTACCGTAATAAATTCTTTAGCATGAGAAAGATTTCCTGTTACCGTAACTCACATCGAATCATCCCAAGAATTTCCCTGGATTTCAAAAGTTCAAAACTCAAAAATGCAGGTTATCAGGAAAGTTGAGAAGAAGTGCTAAAGTTGTTATTACACTGGTCACACAGAAAACAAAGCCTTCATCGCAATATTGCCACAAGAGACGGGTGTCTTCTTCTCAATTTTCCCTCGAACACACACACAACTGTTTCCAGAAAAACGAGGAAGAAGAAGAACATGGAATGAGATGTCAAACGGACGGCAAAAAGAGAGAAAAGTCGAATGTTTCGTTAATGTATTATTTGGGAGGTAAAGCCTATCGCCCTCTCTCAAAAGGCGAGTTATTTGATGGACGGGTGCAGCC</canonical>
            <polymorphic>TTAGTTCCAAGTGTGTGACAACTTATTTATGGATCCCAAATGGATGTTCAGGTGAATGTGTGAACGTTGATTGTGTATGCATTTTAAATCTCTCGCGATTTGAACTTGTTTAATATTTTCGTTCGAAATACATATTTATAGATATAAATTCTAATACTTCTGTTGCTTTGGGAATATGGGAATTCAGATTTAAAGGATAATTGTTTGTTACTGGAAGAGCTTCCTTTTAAAAACCTTAAATTTATTCAATTTCGCCAGAGTTGCAGAGATGTGCGGAATGTTTTTTCGAGAAACGGAATCTAGAATACGGAATCAGGAATAAAATAATTTTCTCGAAATATGGAATCTAGACAACATTTTATTCATTGGAAAGCACGGAAGCCGGAAAACGGAATCCAGAATTCGGAATAAATATATTTTTCGCGGAATCCGGAATCCCCACAGCTCTGCTCCTTAGCCATATCCAACTTGCCTACTTCCCTATCAGCCATACTATCAGWCATACTGATCGAGATAAACTTTTCTTCTTGGATTACGGTATCTAGAAAGTCCGAGAGCTATACTAAATTTATGTGGTTTTTTTATTCTCATGCTCCTGACTACCGTAATAAATTCTTTAGCATGAGAAAGATTTCCTGTTACCGTAACTCACATCGAATCATCCCAAGAATTTCCCTGGATTTCAAAAGTTCAAAACTCAAAAATGCAGGTTATCAGGAAAGTTGAGAAGAAGTGCTAAAGTTGTTATTACACTGGTCACACAGAAAACAAAGCCTTCATCGCAATATTGCCACAAGAGACGGGTGTCTTCTTCTCAATTTTCCCTCGAACACACACACAACTGTTTCCAGAAAAACGAGGAAGAAGAAGAACATGGAATGAGATGTCAAACGGACGGCAAAAAGAGAGAAAAGTCGAATGTTTCGTTAATGTATTATTTGGGAGGTAAAGCCTATCGCCCTCTCTCAAAAGGCGAGTTATTTGATGGACGGGTGCAGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCTTAGCCATATCCAACTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAGTTTTGAACTTTTGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CTCCTTAGCCATATCCAACTTGCCTACTTCCCTATCAGCCATACTATCAGTCATACTGATCGAGATAAACTTTTCTTCTTGGATTACGGTATCTAGAAAGTCCGAGAGCTATACTAAATTTATGTGGTTTTTTTATTCTCATGCTCCTGACTACCGTAATAAATTCTTTAGCATGAGAAAGATTTCCTGTTACCGTAACTCACATCGAATCATCCCAAGAATTTCCCTGGATTTCAAAAGTTCAAAACTCAAA</canonical_amplicon>
		<polymorphic_amplicon>CTCCTTAGCCATATCCAACTTGCCTACTTCCCTATCAGCCATACTATCAGWCATACTGATCGAGATAAACTTTTCTTCTTGGATTACGGTATCTAGAAAGTCCGAGAGCTATACTAAATTTATGTGGTTTTTTTATTCTCATGCTCCTGACTACCGTAATAAATTCTTTAGCATGAGAAAGATTTCCTGTTACCGTAACTCACATCGAATCATCCCAAGAATTTCCCTGGATTTCAAAAGTTCAAAACTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31781</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>425277</contig_pos>
        <strand>+</strand>
        <context>AGGTGCGAAA[A/G]AGAAGAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGAAATTCGCTGCTAAGCAATTAGAGAAGAATGCTCAAAGGTGCGAAA</left_flank>
        <right_flank>AGAAGAAAAAGTCGAGAAGGATAAGTTGACTGCAGCAATCAAGGTGAGTG</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCGAGTCTCTACATTCTGTTTTCTTTAATTTAAGTATAAGTTATTATAGCTGATAGTATAGGTTATTATAGCTGATAATAGCTGATAATAGATAATTACGTTCCATGTACCTGTATTTTGTACGGTCTCCCGTCTTTTCCCACAATGGGGTACGGTCCCAGTCCTCACAGAATAATCAACTGTCGTCATATGTGAGACACCGTCTGCAAACACCATGCTTTTCATCACACATTTCGGCATGACTCACTCGCATCACTCGTTTGCTTTCATAGCTTTCTTGCGAAATTTGTTTATATTTAAACCCCTTTTTTGCACATTTGAAGCTTTCAGAAACACTAATTCCGAAGACTTAATCATGGGTGCCGGAGAAAGCAGCATGGCTCTCGAAAGTGAGTTTTAATTTGTGCATCCTCTGGAACACAATATGTTTTCAGAACATCTTTTCGATTTGAAATTCGCTGCTAAGCAATTAGAGAAGAATGCTCAAAGGTGCGAAAAAGAAGAAAAAGTCGAGAAGGATAAGTTGACTGCAGCAATCAAGGTGAGTGATGTTTCTGATGCGTTGGTTTTTATATTCGAATTTGAAAAAAACCACCAAAATCATCTAACTCAACTATGTATTAATAAAAAATTATCGTAATATTTTCTTTATTGTAGAAAGGAAATAAAGAAGTCGCACAAGTGCATGCCGAAAATGCCATCAGAAAGAAGAATGAAGCTGTCAACTACATCAAAATGGCTGCCAGAATCGATGCCGTTGCTGCAAGAGTTCAGACAGCGGCAACTCAGAAACGAGTCACCGCCAGTATGAGTGGAGTTGTGAAAGCAATGGAAAGTGCAATGAAGAGCATGAATCTGGAGAAAGTACAACAGTTGATGGATCGTTTCGAGAGAGATTTCGAGGATCTCGATGTTACAACAAAAACAATGGAGAAAACGATGGATGGAACTACAGTTCTCAATGCTCCAAAATCACAAGTGGACGCGCTCATAGCAGA</canonical>
            <polymorphic>ACTCGAGTCTCTACATTCTGTTTTCTTTAATTTAAGTATAAGTTATTATAGCTGATAGTATAGGTTATTATAGCTGATAATAGCTGATAATAGATAATTACGTTCCATGTACCTGTATTTTGTACGGTCTCCCGTCTTTTCCCACAATGGGGTACGGTCCCAGTCCTCACAGAATAATCAACTGTCGTCATATGTGAGACACCGTCTGCAAACACCATGCTTTTCATCACACATTTCGGCATGACTCACTCGCATCACTCGTTTGCTTTCATAGCTTTCTTGCGAAATTTGTTTATATTTAAACCCCTTTTTTGCACATTTGAAGCTTTCAGAAACACTAATTCCGAAGACTTAATCATGGGTGCCGGAGAAAGCAGCATGGCTCTCGAAAGTGAGTTTTAATTTGTGCATCCTCTGGAACACAATATGTTTTCAGAACATCTTTTCGATTTGAAATTCGCTGCTAAGCAATTAGAGAAGAATGCTCAAAGGTGCGAAARAGAAGAAAAAGTCGAGAAGGATAAGTTGACTGCAGCAATCAAGGTGAGTGATGTTTCTGATGCGTTGGTTTTTATATTCGAATTTGAAAAAAACCACCAAAATCATCTAACTCAACTATGTATTAATAAAAAATTATCGTAATATTTTCTTTATTGTAGAAAGGAAATAAAGAAGTCGCACAAGTGCATGCCGAAAATGCCATCAGAAAGAAGAATGAAGCTGTCAACTACATCAAAATGGCTGCCAGAATCGATGCCGTTGCTGCAAGAGTTCAGACAGCGGCAACTCAGAAACGAGTCACCGCCAGTATGAGTGGAGTTGTGAAAGCAATGGAAAGTGCAATGAAGAGCATGAATCTGGAGAAAGTACAACAGTTGATGGATCGTTTCGAGAGAGATTTCGAGGATCTCGATGTTACAACAAAAACAATGGAGAAAACGATGGATGGAACTACAGTTCTCAATGCTCCAAAATCACAAGTGGACGCGCTCATAGCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAACATCTTTTCGATTT</pcr_primer_p1>
		<pcr_primer_p2>GCGACTTCTTTATTTCCTTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAACATCTTTTCGATTTGAAATTCGCTGCTAAGCAATTAGAGAAGAATGCTCAAAGGTGCGAAAAAGAAGAAAAAGTCGAGAAGGATAAGTTGACTGCAGCAATCAAGGTGAGTGATGTTTCTGATGCGTTGGTTTTTATATTCGAATTTGAAAAAAACCACCAAAATCATCTAACTCAACTATGTATTAATAAAAAATTATCGTAATATTTTCTTTATTGTAGAAAGGAAATAAAGAAGTCGC</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAACATCTTTTCGATTTGAAATTCGCTGCTAAGCAATTAGAGAAGAATGCTCAAAGGTGCGAAARAGAAGAAAAAGTCGAGAAGGATAAGTTGACTGCAGCAATCAAGGTGAGTGATGTTTCTGATGCGTTGGTTTTTATATTCGAATTTGAAAAAAACCACCAAAATCATCTAACTCAACTATGTATTAATAAAAAATTATCGTAATATTTTCTTTATTGTAGAAAGGAAATAAAGAAGTCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31782</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>425811</contig_pos>
        <strand>+</strand>
        <context>TTTTTATTTC[A/C]TCTTCTGGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GACGCGCTCATAGCAGAGGCTGCCGACAAGGCCGGGTTGGTTTTTATTTC</left_flank>
        <right_flank>TCTTCTGGCTTTATCATCACTATTTTTCAGAATCGAGTTGAACCAAGAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAATCAAGGTGAGTGATGTTTCTGATGCGTTGGTTTTTATATTCGAATTTGAAAAAAACCACCAAAATCATCTAACTCAACTATGTATTAATAAAAAATTATCGTAATATTTTCTTTATTGTAGAAAGGAAATAAAGAAGTCGCACAAGTGCATGCCGAAAATGCCATCAGAAAGAAGAATGAAGCTGTCAACTACATCAAAATGGCTGCCAGAATCGATGCCGTTGCTGCAAGAGTTCAGACAGCGGCAACTCAGAAACGAGTCACCGCCAGTATGAGTGGAGTTGTGAAAGCAATGGAAAGTGCAATGAAGAGCATGAATCTGGAGAAAGTACAACAGTTGATGGATCGTTTCGAGAGAGATTTCGAGGATCTCGATGTTACAACAAAAACAATGGAGAAAACGATGGATGGAACTACAGTTCTCAATGCTCCAAAATCACAAGTGGACGCGCTCATAGCAGAGGCTGCCGACAAGGCCGGGTTGGTTTTTATTTCCTCTTCTGGCTTTATCATCACTATTTTTCAGAATCGAGTTGAACCAAGAATTGCCATCAAACGTGCCAACTGCTCTACCAACCGGAACACAAGCTGTCTCAGAAGACAAAGATTTAACGGAACGACTCGCAGCTCTCCGAAATATGTGATGATGTTATCTCATACTTCTTTTTGTGAATACTCATTTGCTACAACGGTTTAATTCATTTTTCATTAGCAAAGCTACTCGATTTTACCTGCTTGACTTGTTTTGTATATACAATATAAATGAAACCATTTCTTTTTACCAATTGATCACATGTTATTTCGATATACTTTCGAAAATGTATTACTCTTCTGAAACGATATTTCTATTCATGAACTCTAATCAGTATCGATAGATCACTGTTGTTGTGTGTAGTCCACCATTGTTTTAGTCTCTCGCCGCCCGCGTTTTCTCTATCTGCTAACTCGTTCTCCCTGGGTTTCTTCTTTTCACATGCTACATTCATTCTGCTTATC</canonical>
            <polymorphic>GCAATCAAGGTGAGTGATGTTTCTGATGCGTTGGTTTTTATATTCGAATTTGAAAAAAACCACCAAAATCATCTAACTCAACTATGTATTAATAAAAAATTATCGTAATATTTTCTTTATTGTAGAAAGGAAATAAAGAAGTCGCACAAGTGCATGCCGAAAATGCCATCAGAAAGAAGAATGAAGCTGTCAACTACATCAAAATGGCTGCCAGAATCGATGCCGTTGCTGCAAGAGTTCAGACAGCGGCAACTCAGAAACGAGTCACCGCCAGTATGAGTGGAGTTGTGAAAGCAATGGAAAGTGCAATGAAGAGCATGAATCTGGAGAAAGTACAACAGTTGATGGATCGTTTCGAGAGAGATTTCGAGGATCTCGATGTTACAACAAAAACAATGGAGAAAACGATGGATGGAACTACAGTTCTCAATGCTCCAAAATCACAAGTGGACGCGCTCATAGCAGAGGCTGCCGACAAGGCCGGGTTGGTTTTTATTTCMTCTTCTGGCTTTATCATCACTATTTTTCAGAATCGAGTTGAACCAAGAATTGCCATCAAACGTGCCAACTGCTCTACCAACCGGAACACAAGCTGTCTCAGAAGACAAAGATTTAACGGAACGACTCGCAGCTCTCCGAAATATGTGATGATGTTATCTCATACTTCTTTTTGTGAATACTCATTTGCTACAACGGTTTAATTCATTTTTCATTAGCAAAGCTACTCGATTTTACCTGCTTGACTTGTTTTGTATATACAATATAAATGAAACCATTTCTTTTTACCAATTGATCACATGTTATTTCGATATACTTTCGAAAATGTATTACTCTTCTGAAACGATATTTCTATTCATGAACTCTAATCAGTATCGATAGATCACTGTTGTTGTGTGTAGTCCACCATTGTTTTAGTCTCTCGCCGCCCGCGTTTTCTCTATCTGCTAACTCGTTCTCCCTGGGTTTCTTCTTTTCACATGCTACATTCATTCTGCTTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGATGTTACAACAAAAACAAT</pcr_primer_p1>
		<pcr_primer_p2>GTTCCGTTAAATCTTTGTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTCGATGTTACAACAAAAACAATGGAGAAAACGATGGATGGAACTACAGTTCTCAATGCTCCAAAATCACAAGTGGACGCGCTCATAGCAGAGGCTGCCGACAAGGCCGGGTTGGTTTTTATTTCCTCTTCTGGCTTTATCATCACTATTTTTCAGAATCGAGTTGAACCAAGAATTGCCATCAAACGTGCCAACTGCTCTACCAACCGGAACACAAGCTGTCTCAGAAGACAAAGATTTAACGGAAC</canonical_amplicon>
		<polymorphic_amplicon>CTCGATGTTACAACAAAAACAATGGAGAAAACGATGGATGGAACTACAGTTCTCAATGCTCCAAAATCACAAGTGGACGCGCTCATAGCAGAGGCTGCCGACAAGGCCGGGTTGGTTTTTATTTCMTCTTCTGGCTTTATCATCACTATTTTTCAGAATCGAGTTGAACCAAGAATTGCCATCAAACGTGCCAACTGCTCTACCAACCGGAACACAAGCTGTCTCAGAAGACAAAGATTTAACGGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31783</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>439981</contig_pos>
        <strand></strand>
        <context>GAATGATGGG[C/T]GTACAAGATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGGGTGTACACGTGTTGAAGAGGCTTCTTGATCAATTGGGAATGATGGG</left_flank>
        <right_flank>GTACAAGATGTTTCTGAGTTGCTGTCTGGTTCAAAACAGATTGTTACCCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGCTGTAAGAAAGTTCTAATTTTTTCCTGAATCTAATTACATATGTTTCAGATTGAATCAGTGCTTCACCAAAGAACCTCTCCACCACAGCTCACGCAGGCTCACAATACAATGCCCTACAATCCACTACAGAACGCTCCTGCTCCAGCTTATCAACCTGCACCCACAGCTCCTCCACAGCAATTGCAGCAACCAAACATGGTTCAGCCGTGCTCTGAGATAGTTCCTGAGCAGAGACATACTTTTATGATACCTCCAACGGATCCATTATACGATATTATTGTCAGCTATTACTTCGAGTTCAAAAAGTACCTCAATGCCGCCAAGAATGGAGAATCAGATCTTTTGAATAGTTTGCGACAAGACATTGAGGCTGAGAAAAATCGGCGCATTGAGCTCAACGAGTCAGCGGCTTCGACGAACTGTCAGATTGACGAACTCCTATCAGTGGGTGTACACGTGTTGAAGAGGCTTCTTGATCAATTGGGAATGATGGGCGTACAAGATGTTTCTGAGTTGCTGTCTGGTTCAAAACAGATTGTTACCCAACACAAAGCACTTTCAACCAATGTCGCACAATTGGAACAAGCAGTGGCTATCGAAGAAGAGAAACTGAAAACGCTTGGTGCTCCAGATGCCCTAAAATATTACAACGGTAAGACATTTCATTGAATGCTATTCGTGACAATGTACATTACTTATTTTTACAGAAGCCATGAACCAAAATGTGGAAACTGAGAAACTACTGCAATTGATCATCGCCTCTCGACCGGCAAATTTCGTTCCTCAAACTGTCCTAGACAAGTATTTAAGCAACGATTCAAAAGTTTCACCATCTTCTCGACGTGCTCGTCAACCGAAACCAAAACAAGGGAGTAGTGGAAAACGTGGTAACTCATCTGGGCGAAAATCGGACGTGCCAGCAGAAGACGTAGACCTTGAGATCCAACAATTCGTTCAACATGCAATGAAAGTGGACAACGCTGTGAAGGAAAAAG</canonical>
            <polymorphic>GAAGCTGTAAGAAAGTTCTAATTTTTTCCTGAATCTAATTACATATGTTTCAGATTGAATCAGTGCTTCACCAAAGAACCTCTCCACCACAGCTCACGCAGGCTCACAATACAATGCCCTACAATCCACTACAGAACGCTCCTGCTCCAGCTTATCAACCTGCACCCACAGCTCCTCCACAGCAATTGCAGCAACCAAACATGGTTCAGCCGTGCTCTGAGATAGTTCCTGAGCAGAGACATACTTTTATGATACCTCCAACGGATCCATTATACGATATTATTGTCAGCTATTACTTCGAGTTCAAAAAGTACCTCAATGCCGCCAAGAATGGAGAATCAGATCTTTTGAATAGTTTGCGACAAGACATTGAGGCTGAGAAAAATCGGCGCATTGAGCTCAACGAGTCAGCGGCTTCGACGAACTGTCAGATTGACGAACTCCTATCAGTGGGTGTACACGTGTTGAAGAGGCTTCTTGATCAATTGGGAATGATGGGYGTACAAGATGTTTCTGAGTTGCTGTCTGGTTCAAAACAGATTGTTACCCAACACAAAGCACTTTCAACCAATGTCGCACAATTGGAACAAGCAGTGGCTATCGAAGAAGAGAAACTGAAAACGCTTGGTGCTCCAGATGCCCTAAAATATTACAACGGTAAGACATTTCATTGAATGCTATTCGTGACAATGTACATTACTTATTTTTACAGAAGCCATGAACCAAAATGTGGAAACTGAGAAACTACTGCAATTGATCATCGCCTCTCGACCGGCAAATTTCGTTCCTCAAACTGTCCTAGACAAGTATTTAAGCAACGATTCAAAAGTTTCACCATCTTCTCGACGTGCTCGTCAACCGAAACCAAAACAAGGGAGTAGTGGAAAACGTGGTAACTCATCTGGGCGAAAATCGGACGTGCCAGCAGAAGACGTAGACCTTGAGATCCAACAATTCGTTCAACATGCAATGAAAGTGGACAACGCTGTGAAGGAAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAGATTGACGAACTCCTATC</pcr_primer_p1>
		<pcr_primer_p2>ATGAAATGTCTTACCGTTGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GTCAGATTGACGAACTCCTATCAGTGGGTGTACACGTGTTGAAGAGGCTTCTTGATCAATTGGGAATGATGGGCGTACAAGATGTTTCTGAGTTGCTGTCTGGTTCAAAACAGATTGTTACCCAACACAAAGCACTTTCAACCAATGTCGCACAATTGGAACAAGCAGTGGCTATCGAAGAAGAGAAACTGAAAACGCTTGGTGCTCCAGATGCCCTAAAATATTACAACGGTAAGACATTTCAT</canonical_amplicon>
		<polymorphic_amplicon>GTCAGATTGACGAACTCCTATCAGTGGGTGTACACGTGTTGAAGAGGCTTCTTGATCAATTGGGAATGATGGGYGTACAAGATGTTTCTGAGTTGCTGTCTGGTTCAAAACAGATTGTTACCCAACACAAAGCACTTTCAACCAATGTCGCACAATTGGAACAAGCAGTGGCTATCGAAGAAGAGAAACTGAAAACGCTTGGTGCTCCAGATGCCCTAAAATATTACAACGGTAAGACATTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31784</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>456592</contig_pos>
        <strand>+</strand>
        <context>AAGAATAGGC[A/T]GACATCTCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAGTGACTCCGATTGGAATGGAAAGAGTTGGAGTATCCGAAGAATAGGC</left_flank>
        <right_flank>GACATCTCAGGAGATTAGACTTGACTAGATGAGTGAACGTCCGATGACTG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTTTCGACACAACAAGAATTGCTTGATATTTATTGCAACTATCCAGCAAAACCGCGTTTTCGCATTCGGTTTTTTGAGAAAGACGAACTTTGAAATCAATTTCCTTTCGCATCAGAGCTGCTCCAGTTTGAATATTTTGCATCATGAAGATGTTTTTGTCACTTGGAACACGATTCAGACTTGATCCATAATCGATCACCCATCTGTTTTTAATTGTGGAGTACTGGTACCTAAAACAAAATTCATAAGGAGAGTTAAAAAAGCTTGAAAGTTTAAACTCACTTTCCCTCGCAGATTTTCTCAAATCGAAGACTCAATTGATAATCGGAAATGACATCCAGTCCAGTAAAACAAAAAGTTGGAATTGGAGAGAAAATTCTGCCAATTGGAGTAAGTCTTTGTTCCATTATAGCAGGATAGAAAGACTCAAACACATCCAAATTTTGAAGAGTGACTCCGATTGGAATGGAAAGAGTTGGAGTATCCGAAGAATAGGCTGACATCTCAGGAGATTAGACTTGACTAGATGAGTGAACGTCCGATGACTGAATGAATGAATAAATGTTTCTCAAATAGGTAAGAAATAGTGGGCGGAGTTAGTGCTAACATTCTATGATCCGCCCCCTGAACATTAGATCCAGATGCATACTTTTGAAAGTATACTTTACTGGATACACAGTACACTCATACACCAGCGTATACTGTAAGTCAGGGGAGAGCATCGGAAAAGTATACAAGAAGTATACTCAGCATACCATTCTTCTGGGAAGCTTTATAGCCGGAGCTAAAAAAAAATAGAAGAAAAGAAATCACTCGATTTACAGAAGCCAAGAGATGCCCTCCAGTAATCCTTTTCGTTTTCGAATTTTCATCCTACAGTAACATTTTTCATATTAGAAATTGTTTCCATACAGTACATCTTCTTCGTTTTCGAATTGTTTTTCTCAGTAATCCATTTCATTTCCCGCGAACTCCCATACAAACCATAGATGTCCGGG</canonical>
            <polymorphic>AACTTTCGACACAACAAGAATTGCTTGATATTTATTGCAACTATCCAGCAAAACCGCGTTTTCGCATTCGGTTTTTTGAGAAAGACGAACTTTGAAATCAATTTCCTTTCGCATCAGAGCTGCTCCAGTTTGAATATTTTGCATCATGAAGATGTTTTTGTCACTTGGAACACGATTCAGACTTGATCCATAATCGATCACCCATCTGTTTTTAATTGTGGAGTACTGGTACCTAAAACAAAATTCATAAGGAGAGTTAAAAAAGCTTGAAAGTTTAAACTCACTTTCCCTCGCAGATTTTCTCAAATCGAAGACTCAATTGATAATCGGAAATGACATCCAGTCCAGTAAAACAAAAAGTTGGAATTGGAGAGAAAATTCTGCCAATTGGAGTAAGTCTTTGTTCCATTATAGCAGGATAGAAAGACTCAAACACATCCAAATTTTGAAGAGTGACTCCGATTGGAATGGAAAGAGTTGGAGTATCCGAAGAATAGGCWGACATCTCAGGAGATTAGACTTGACTAGATGAGTGAACGTCCGATGACTGAATGAATGAATAAATGTTTCTCAAATAGGTAAGAAATAGTGGGCGGAGTTAGTGCTAACATTCTATGATCCGCCCCCTGAACATTAGATCCAGATGCATACTTTTGAAAGTATACTTTACTGGATACACAGTACACTCATACACCAGCGTATACTGTAAGTCAGGGGAGAGCATCGGAAAAGTATACAAGAAGTATACTCAGCATACCATTCTTCTGGGAAGCTTTATAGCCGGAGCTAAAAAAAAATAGAAGAAAAGAAATCACTCGATTTACAGAAGCCAAGAGATGCCCTCCAGTAATCCTTTTCGTTTTCGAATTTTCATCCTACAGTAACATTTTTCATATTAGAAATTGTTTCCATACAGTACATCTTCTTCGTTTTCGAATTGTTTTTCTCAGTAATCCATTTCATTTCCCGCGAACTCCCATACAAACCATAGATGTCCGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>274 233 171 146 119 43 8 6</canonical_bands>
                <polymorphic_bands>507 171 146 119 43 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCATTATAGCAGGATAGAAAGA</pcr_primer_p1>
		<pcr_primer_p2>GTATGCATCTGGATCTAATGTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCCATTATAGCAGGATAGAAAGACTCAAACACATCCAAATTTTGAAGAGTGACTCCGATTGGAATGGAAAGAGTTGGAGTATCCGAAGAATAGGCTGACATCTCAGGAGATTAGACTTGACTAGATGAGTGAACGTCCGATGACTGAATGAATGAATAAATGTTTCTCAAATAGGTAAGAAATAGTGGGCGGAGTTAGTGCTAACATTCTATGATCCGCCCCCTGAACATTAGATCCAGATGCATAC</canonical_amplicon>
		<polymorphic_amplicon>TCCATTATAGCAGGATAGAAAGACTCAAACACATCCAAATTTTGAAGAGTGACTCCGATTGGAATGGAAAGAGTTGGAGTATCCGAAGAATAGGCWGACATCTCAGGAGATTAGACTTGACTAGATGAGTGAACGTCCGATGACTGAATGAATGAATAAATGTTTCTCAAATAGGTAAGAAATAGTGGGCGGAGTTAGTGCTAACATTCTATGATCCGCCCCCTGAACATTAGATCCAGATGCATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31785</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>475590</contig_pos>
        <strand>+</strand>
        <context>TTCATTCCAT[G/T]AATTAATGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCAAAGCACTTAGTAATTTCTTTTTTACTCAATCCTTCATTCATTCCAT</left_flank>
        <right_flank>AATTAATGCTTGATAACAAGGTTGAAATAAGGTTGTACTAAAGATATAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGACTAGATTTATCAATTGTTAAAAAGTTGTACTTCGTAGACCAAACTTCTTTTGTAAATTCAAGAAATTCTTCCTTTTTTATTTCATTACAATGATCTCTGTAGATGTAATCCAAATTCATCTTATCTTGTGGGAATATTATAAAGAAGTTAGCGTTTTCTCTAATTGTATTCTTTGGAAGCTTTATATAATTCTGTGAAATGTAAAAACAATCAATTGAAGAATGCCTTCCTCTAGTATAATATTGTTCTATTTTATTTTGTTTTTCTAATAAAAGATCATCAAAAATTATTAGAGTCTTCTTATTTACATCTAAAGATGAAGGATCTGGAATGTCTTCTATTTTGTCAGAAGAATGGACTTCAATAATTTTTTGTGCCCTAGGGTCCTTTTCTTCACCTTGAGAAGTGGGATTCCTAGAAGGAATTTCAATAATGAAGTCTTGCTTTTCAAAGCACTTAGTAATTTCTTTTTTACTCAATCCTTCATTCATTCCATTAATTAATGCTTGATAACAAGGTTGAAATAAGGTTGTACTAAAGATATAAAGGTTATCATAATTAAGGTATTCTTCTCCTTTACCATTAGGTGAATCTAATAGCAAATTCATAAGTAAATTAGTCTTTCCACATCCACTCTTTCCAATAATACAACCTCTTATTGATTGAGGAAGTAAAGGATTATTATTTCTTTCAGGATAATAATTTTTGACACTATAATCATTAAATTCACTATTTGAGAAAGACATTCTTCTTTAGAAAATATTTTTTTTATTTAAATGACAACATTATTTCTCAATTTGCACAGAATTAATGAAAAAACATTTTATTTTGATTTTCCTCCAAGTAATAAAATAAATGAGCTTGCAGTAGTCAAAGTTGATGGTATTCTTCAGTTACTAGAAGGATCTGAAAGACATTCACCTGGTGAAGGTAATAAAAATCTAGATTTTGTTTATCTATCTTGCAATCTAGTTTGTGATACTTTTATCAATGAAAG</canonical>
            <polymorphic>GGACTAGATTTATCAATTGTTAAAAAGTTGTACTTCGTAGACCAAACTTCTTTTGTAAATTCAAGAAATTCTTCCTTTTTTATTTCATTACAATGATCTCTGTAGATGTAATCCAAATTCATCTTATCTTGTGGGAATATTATAAAGAAGTTAGCGTTTTCTCTAATTGTATTCTTTGGAAGCTTTATATAATTCTGTGAAATGTAAAAACAATCAATTGAAGAATGCCTTCCTCTAGTATAATATTGTTCTATTTTATTTTGTTTTTCTAATAAAAGATCATCAAAAATTATTAGAGTCTTCTTATTTACATCTAAAGATGAAGGATCTGGAATGTCTTCTATTTTGTCAGAAGAATGGACTTCAATAATTTTTTGTGCCCTAGGGTCCTTTTCTTCACCTTGAGAAGTGGGATTCCTAGAAGGAATTTCAATAATGAAGTCTTGCTTTTCAAAGCACTTAGTAATTTCTTTTTTACTCAATCCTTCATTCATTCCATKAATTAATGCTTGATAACAAGGTTGAAATAAGGTTGTACTAAAGATATAAAGGTTATCATAATTAAGGTATTCTTCTCCTTTACCATTAGGTGAATCTAATAGCAAATTCATAAGTAAATTAGTCTTTCCACATCCACTCTTTCCAATAATACAACCTCTTATTGATTGAGGAAGTAAAGGATTATTATTTCTTTCAGGATAATAATTTTTGACACTATAATCATTAAATTCACTATTTGAGAAAGACATTCTTCTTTAGAAAATATTTTTTTTATTTAAATGACAACATTATTTCTCAATTTGCACAGAATTAATGAAAAAACATTTTATTTTGATTTTCCTCCAAGTAATAAAATAAATGAGCTTGCAGTAGTCAAAGTTGATGGTATTCTTCAGTTACTAGAAGGATCTGAAAGACATTCACCTGGTGAAGGTAATAAAAATCTAGATTTTGTTTATCTATCTTGCAATCTAGTTTGTGATACTTTTATCAATGAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 308 189 4</canonical_bands>
                <polymorphic_bands>503 308 189</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>479 189 162 59 52 35 20 4</canonical_bands>
                <polymorphic_bands>483 189 162 59 52 35 20</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAATTAA</site>
                <isoschizomers>
                    <enzyme>PacI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAATGAAGTCTTGCTTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>TCCTTTACTTCCTCAATCAATAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATAATGAAGTCTTGCTTTTCAAAGCACTTAGTAATTTCTTTTTTACTCAATCCTTCATTCATTCCATTAATTAATGCTTGATAACAAGGTTGAAATAAGGTTGTACTAAAGATATAAAGGTTATCATAATTAAGGTATTCTTCTCCTTTACCATTAGGTGAATCTAATAGCAAATTCATAAGTAAATTAGTCTTTCCACATCCACTCTTTCCAATAATACAACCTCTTATTGATTGAGGAAGTAAAGGA</canonical_amplicon>
		<polymorphic_amplicon>AATAATGAAGTCTTGCTTTTCAAAGCACTTAGTAATTTCTTTTTTACTCAATCCTTCATTCATTCCATKAATTAATGCTTGATAACAAGGTTGAAATAAGGTTGTACTAAAGATATAAAGGTTATCATAATTAAGGTATTCTTCTCCTTTACCATTAGGTGAATCTAATAGCAAATTCATAAGTAAATTAGTCTTTCCACATCCACTCTTTCCAATAATACAACCTCTTATTGATTGAGGAAGTAAAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31786</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>475647</contig_pos>
        <strand>+</strand>
        <context>TAAAGGTTAT[C/T]ATAATTAAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCTTGATAACAAGGTTGAAATAAGGTTGTACTAAAGATATAAAGGTTAT</left_flank>
        <right_flank>ATAATTAAGGTATTCTTCTCCTTTACCATTAGGTGAATCTAATAGCAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCAAGAAATTCTTCCTTTTTTATTTCATTACAATGATCTCTGTAGATGTAATCCAAATTCATCTTATCTTGTGGGAATATTATAAAGAAGTTAGCGTTTTCTCTAATTGTATTCTTTGGAAGCTTTATATAATTCTGTGAAATGTAAAAACAATCAATTGAAGAATGCCTTCCTCTAGTATAATATTGTTCTATTTTATTTTGTTTTTCTAATAAAAGATCATCAAAAATTATTAGAGTCTTCTTATTTACATCTAAAGATGAAGGATCTGGAATGTCTTCTATTTTGTCAGAAGAATGGACTTCAATAATTTTTTGTGCCCTAGGGTCCTTTTCTTCACCTTGAGAAGTGGGATTCCTAGAAGGAATTTCAATAATGAAGTCTTGCTTTTCAAAGCACTTAGTAATTTCTTTTTTACTCAATCCTTCATTCATTCCATTAATTAATGCTTGATAACAAGGTTGAAATAAGGTTGTACTAAAGATATAAAGGTTATCATAATTAAGGTATTCTTCTCCTTTACCATTAGGTGAATCTAATAGCAAATTCATAAGTAAATTAGTCTTTCCACATCCACTCTTTCCAATAATACAACCTCTTATTGATTGAGGAAGTAAAGGATTATTATTTCTTTCAGGATAATAATTTTTGACACTATAATCATTAAATTCACTATTTGAGAAAGACATTCTTCTTTAGAAAATATTTTTTTTATTTAAATGACAACATTATTTCTCAATTTGCACAGAATTAATGAAAAAACATTTTATTTTGATTTTCCTCCAAGTAATAAAATAAATGAGCTTGCAGTAGTCAAAGTTGATGGTATTCTTCAGTTACTAGAAGGATCTGAAAGACATTCACCTGGTGAAGGTAATAAAAATCTAGATTTTGTTTATCTATCTTGCAATCTAGTTTGTGATACTTTTATCAATGAAAGACAAAGCAACGTTATTTGTAAATTTCCAATTCTTAAAGATAATGAAAAAATAAAAAA</canonical>
            <polymorphic>AATTCAAGAAATTCTTCCTTTTTTATTTCATTACAATGATCTCTGTAGATGTAATCCAAATTCATCTTATCTTGTGGGAATATTATAAAGAAGTTAGCGTTTTCTCTAATTGTATTCTTTGGAAGCTTTATATAATTCTGTGAAATGTAAAAACAATCAATTGAAGAATGCCTTCCTCTAGTATAATATTGTTCTATTTTATTTTGTTTTTCTAATAAAAGATCATCAAAAATTATTAGAGTCTTCTTATTTACATCTAAAGATGAAGGATCTGGAATGTCTTCTATTTTGTCAGAAGAATGGACTTCAATAATTTTTTGTGCCCTAGGGTCCTTTTCTTCACCTTGAGAAGTGGGATTCCTAGAAGGAATTTCAATAATGAAGTCTTGCTTTTCAAAGCACTTAGTAATTTCTTTTTTACTCAATCCTTCATTCATTCCATTAATTAATGCTTGATAACAAGGTTGAAATAAGGTTGTACTAAAGATATAAAGGTTATYATAATTAAGGTATTCTTCTCCTTTACCATTAGGTGAATCTAATAGCAAATTCATAAGTAAATTAGTCTTTCCACATCCACTCTTTCCAATAATACAACCTCTTATTGATTGAGGAAGTAAAGGATTATTATTTCTTTCAGGATAATAATTTTTGACACTATAATCATTAAATTCACTATTTGAGAAAGACATTCTTCTTTAGAAAATATTTTTTTTATTTAAATGACAACATTATTTCTCAATTTGCACAGAATTAATGAAAAAACATTTTATTTTGATTTTCCTCCAAGTAATAAAATAAATGAGCTTGCAGTAGTCAAAGTTGATGGTATTCTTCAGTTACTAGAAGGATCTGAAAGACATTCACCTGGTGAAGGTAATAAAAATCTAGATTTTGTTTATCTATCTTGCAATCTAGTTTGTGATACTTTTATCAATGAAAGACAAAGCAACGTTATTTGTAAATTTCCAATTCTTAAAGATAATGAAAAAATAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAATGAAGTCTTGCTTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>TCCTTTACTTCCTCAATCAATAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATAATGAAGTCTTGCTTTTCAAAGCACTTAGTAATTTCTTTTTTACTCAATCCTTCATTCATTCCATTAATTAATGCTTGATAACAAGGTTGAAATAAGGTTGTACTAAAGATATAAAGGTTATCATAATTAAGGTATTCTTCTCCTTTACCATTAGGTGAATCTAATAGCAAATTCATAAGTAAATTAGTCTTTCCACATCCACTCTTTCCAATAATACAACCTCTTATTGATTGAGGAAGTAAAGGA</canonical_amplicon>
		<polymorphic_amplicon>AATAATGAAGTCTTGCTTTTCAAAGCACTTAGTAATTTCTTTTTTACTCAATCCTTCATTCATTCCATTAATTAATGCTTGATAACAAGGTTGAAATAAGGTTGTACTAAAGATATAAAGGTTATYATAATTAAGGTATTCTTCTCCTTTACCATTAGGTGAATCTAATAGCAAATTCATAAGTAAATTAGTCTTTCCACATCCACTCTTTCCAATAATACAACCTCTTATTGATTGAGGAAGTAAAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31787</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>475798</contig_pos>
        <strand>+</strand>
        <context>GATAATAATT[C/T]TTGACACTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTATTGATTGAGGAAGTAAAGGATTATTATTTCTTTCAGGATAATAATT</left_flank>
        <right_flank>TTGACACTATAATCATTAAATTCACTATTTGAGAAAGACATTCTTCTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAATCAATTGAAGAATGCCTTCCTCTAGTATAATATTGTTCTATTTTATTTTGTTTTTCTAATAAAAGATCATCAAAAATTATTAGAGTCTTCTTATTTACATCTAAAGATGAAGGATCTGGAATGTCTTCTATTTTGTCAGAAGAATGGACTTCAATAATTTTTTGTGCCCTAGGGTCCTTTTCTTCACCTTGAGAAGTGGGATTCCTAGAAGGAATTTCAATAATGAAGTCTTGCTTTTCAAAGCACTTAGTAATTTCTTTTTTACTCAATCCTTCATTCATTCCATTAATTAATGCTTGATAACAAGGTTGAAATAAGGTTGTACTAAAGATATAAAGGTTATCATAATTAAGGTATTCTTCTCCTTTACCATTAGGTGAATCTAATAGCAAATTCATAAGTAAATTAGTCTTTCCACATCCACTCTTTCCAATAATACAACCTCTTATTGATTGAGGAAGTAAAGGATTATTATTTCTTTCAGGATAATAATTTTTGACACTATAATCATTAAATTCACTATTTGAGAAAGACATTCTTCTTTAGAAAATATTTTTTTTATTTAAATGACAACATTATTTCTCAATTTGCACAGAATTAATGAAAAAACATTTTATTTTGATTTTCCTCCAAGTAATAAAATAAATGAGCTTGCAGTAGTCAAAGTTGATGGTATTCTTCAGTTACTAGAAGGATCTGAAAGACATTCACCTGGTGAAGGTAATAAAAATCTAGATTTTGTTTATCTATCTTGCAATCTAGTTTGTGATACTTTTATCAATGAAAGACAAAGCAACGTTATTTGTAAATTTCCAATTCTTAAAGATAATGAAAAAATAAAAAATGAACCAATTAACCCAATTTATCACAAACTTACGGATAGACCAAATGTTTTAACTCTCAAGCTTGTTGACTCTTTGAATAATCTTATCGATTTCAATAGGTGTGATCTTCATGTAGAATTACACTTGAAAACAGCGTAAGCAACTCAAATC</canonical>
            <polymorphic>AACAATCAATTGAAGAATGCCTTCCTCTAGTATAATATTGTTCTATTTTATTTTGTTTTTCTAATAAAAGATCATCAAAAATTATTAGAGTCTTCTTATTTACATCTAAAGATGAAGGATCTGGAATGTCTTCTATTTTGTCAGAAGAATGGACTTCAATAATTTTTTGTGCCCTAGGGTCCTTTTCTTCACCTTGAGAAGTGGGATTCCTAGAAGGAATTTCAATAATGAAGTCTTGCTTTTCAAAGCACTTAGTAATTTCTTTTTTACTCAATCCTTCATTCATTCCATTAATTAATGCTTGATAACAAGGTTGAAATAAGGTTGTACTAAAGATATAAAGGTTATCATAATTAAGGTATTCTTCTCCTTTACCATTAGGTGAATCTAATAGCAAATTCATAAGTAAATTAGTCTTTCCACATCCACTCTTTCCAATAATACAACCTCTTATTGATTGAGGAAGTAAAGGATTATTATTTCTTTCAGGATAATAATTYTTGACACTATAATCATTAAATTCACTATTTGAGAAAGACATTCTTCTTTAGAAAATATTTTTTTTATTTAAATGACAACATTATTTCTCAATTTGCACAGAATTAATGAAAAAACATTTTATTTTGATTTTCCTCCAAGTAATAAAATAAATGAGCTTGCAGTAGTCAAAGTTGATGGTATTCTTCAGTTACTAGAAGGATCTGAAAGACATTCACCTGGTGAAGGTAATAAAAATCTAGATTTTGTTTATCTATCTTGCAATCTAGTTTGTGATACTTTTATCAATGAAAGACAAAGCAACGTTATTTGTAAATTTCCAATTCTTAAAGATAATGAAAAAATAAAAAATGAACCAATTAACCCAATTTATCACAAACTTACGGATAGACCAAATGTTTTAACTCTCAAGCTTGTTGACTCTTTGAATAATCTTATCGATTTCAATAGGTGTGATCTTCATGTAGAATTACACTTGAAAACAGCGTAAGCAACTCAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGTATTCTTCTCCTTTACCAT</pcr_primer_p1>
		<pcr_primer_p2>AATTCTGTGCAAATTGAGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGGTATTCTTCTCCTTTACCATTAGGTGAATCTAATAGCAAATTCATAAGTAAATTAGTCTTTCCACATCCACTCTTTCCAATAATACAACCTCTTATTGATTGAGGAAGTAAAGGATTATTATTTCTTTCAGGATAATAATTTTTGACACTATAATCATTAAATTCACTATTTGAGAAAGACATTCTTCTTTAGAAAATATTTTTTTTATTTAAATGACAACATTATTTCTCAATTTGCACAGAATT</canonical_amplicon>
		<polymorphic_amplicon>AAGGTATTCTTCTCCTTTACCATTAGGTGAATCTAATAGCAAATTCATAAGTAAATTAGTCTTTCCACATCCACTCTTTCCAATAATACAACCTCTTATTGATTGAGGAAGTAAAGGATTATTATTTCTTTCAGGATAATAATTYTTGACACTATAATCATTAAATTCACTATTTGAGAAAGACATTCTTCTTTAGAAAATATTTTTTTTATTTAAATGACAACATTATTTCTCAATTTGCACAGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31788</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>475935</contig_pos>
        <strand>+</strand>
        <context>ATTTTCCTCC[A/C]AGTAATAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTCAATTTGCACAGAATTAATGAAAAAACATTTTATTTTGATTTTCCTCC</left_flank>
        <right_flank>AGTAATAAAATAAATGAGCTTGCAGTAGTCAAAGTTGATGGTATTCTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTCAGAAGAATGGACTTCAATAATTTTTTGTGCCCTAGGGTCCTTTTCTTCACCTTGAGAAGTGGGATTCCTAGAAGGAATTTCAATAATGAAGTCTTGCTTTTCAAAGCACTTAGTAATTTCTTTTTTACTCAATCCTTCATTCATTCCATTAATTAATGCTTGATAACAAGGTTGAAATAAGGTTGTACTAAAGATATAAAGGTTATCATAATTAAGGTATTCTTCTCCTTTACCATTAGGTGAATCTAATAGCAAATTCATAAGTAAATTAGTCTTTCCACATCCACTCTTTCCAATAATACAACCTCTTATTGATTGAGGAAGTAAAGGATTATTATTTCTTTCAGGATAATAATTTTTGACACTATAATCATTAAATTCACTATTTGAGAAAGACATTCTTCTTTAGAAAATATTTTTTTTATTTAAATGACAACATTATTTCTCAATTTGCACAGAATTAATGAAAAAACATTTTATTTTGATTTTCCTCCAAGTAATAAAATAAATGAGCTTGCAGTAGTCAAAGTTGATGGTATTCTTCAGTTACTAGAAGGATCTGAAAGACATTCACCTGGTGAAGGTAATAAAAATCTAGATTTTGTTTATCTATCTTGCAATCTAGTTTGTGATACTTTTATCAATGAAAGACAAAGCAACGTTATTTGTAAATTTCCAATTCTTAAAGATAATGAAAAAATAAAAAATGAACCAATTAACCCAATTTATCACAAACTTACGGATAGACCAAATGTTTTAACTCTCAAGCTTGTTGACTCTTTGAATAATCTTATCGATTTCAATAGGTGTGATCTTCATGTAGAATTACACTTGAAAACAGCGTAAGCAACTCAAATCCTTTTAAAACCAGATCCACGTTTTAGAGCTCTAAGAAATGCTGCATTCTTTTTATTCAAACCTTCGGTTCTATTAGTATTCAACGATTTTTGAGTAATACTTGCTCCTTCACTTACTTTTTTATTGTTTTCTATTTT</canonical>
            <polymorphic>TTGTCAGAAGAATGGACTTCAATAATTTTTTGTGCCCTAGGGTCCTTTTCTTCACCTTGAGAAGTGGGATTCCTAGAAGGAATTTCAATAATGAAGTCTTGCTTTTCAAAGCACTTAGTAATTTCTTTTTTACTCAATCCTTCATTCATTCCATTAATTAATGCTTGATAACAAGGTTGAAATAAGGTTGTACTAAAGATATAAAGGTTATCATAATTAAGGTATTCTTCTCCTTTACCATTAGGTGAATCTAATAGCAAATTCATAAGTAAATTAGTCTTTCCACATCCACTCTTTCCAATAATACAACCTCTTATTGATTGAGGAAGTAAAGGATTATTATTTCTTTCAGGATAATAATTTTTGACACTATAATCATTAAATTCACTATTTGAGAAAGACATTCTTCTTTAGAAAATATTTTTTTTATTTAAATGACAACATTATTTCTCAATTTGCACAGAATTAATGAAAAAACATTTTATTTTGATTTTCCTCCMAGTAATAAAATAAATGAGCTTGCAGTAGTCAAAGTTGATGGTATTCTTCAGTTACTAGAAGGATCTGAAAGACATTCACCTGGTGAAGGTAATAAAAATCTAGATTTTGTTTATCTATCTTGCAATCTAGTTTGTGATACTTTTATCAATGAAAGACAAAGCAACGTTATTTGTAAATTTCCAATTCTTAAAGATAATGAAAAAATAAAAAATGAACCAATTAACCCAATTTATCACAAACTTACGGATAGACCAAATGTTTTAACTCTCAAGCTTGTTGACTCTTTGAATAATCTTATCGATTTCAATAGGTGTGATCTTCATGTAGAATTACACTTGAAAACAGCGTAAGCAACTCAAATCCTTTTAAAACCAGATCCACGTTTTAGAGCTCTAAGAAATGCTGCATTCTTTTTATTCAAACCTTCGGTTCTATTAGTATTCAACGATTTTTGAGTAATACTTGCTCCTTCACTTACTTTTTTATTGTTTTCTATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTCTTATTGATTGAGGAAGTAA</pcr_primer_p1>
		<pcr_primer_p2>TCTAGTAACTGAAGAATACCATCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTCTTATTGATTGAGGAAGTAAAGGATTATTATTTCTTTCAGGATAATAATTTTTGACACTATAATCATTAAATTCACTATTTGAGAAAGACATTCTTCTTTAGAAAATATTTTTTTTATTTAAATGACAACATTATTTCTCAATTTGCACAGAATTAATGAAAAAACATTTTATTTTGATTTTCCTCCAAGTAATAAAATAAATGAGCTTGCAGTAGTCAAAGTTGATGGTATTCTTCAGTTACTAGA</canonical_amplicon>
		<polymorphic_amplicon>CCTCTTATTGATTGAGGAAGTAAAGGATTATTATTTCTTTCAGGATAATAATTTTTGACACTATAATCATTAAATTCACTATTTGAGAAAGACATTCTTCTTTAGAAAATATTTTTTTTATTTAAATGACAACATTATTTCTCAATTTGCACAGAATTAATGAAAAAACATTTTATTTTGATTTTCCTCCMAGTAATAAAATAAATGAGCTTGCAGTAGTCAAAGTTGATGGTATTCTTCAGTTACTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31789</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>476058</contig_pos>
        <strand>+</strand>
        <context>ATCTATCTTG[C/T]AATCTAGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATTCACCTGGTGAAGGTAATAAAAATCTAGATTTTGTTTATCTATCTTG</left_flank>
        <right_flank>AATCTAGTTTGTGATACTTTTATCAATGAAAGACAAAGCAACGTTATTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTTTTTACTCAATCCTTCATTCATTCCATTAATTAATGCTTGATAACAAGGTTGAAATAAGGTTGTACTAAAGATATAAAGGTTATCATAATTAAGGTATTCTTCTCCTTTACCATTAGGTGAATCTAATAGCAAATTCATAAGTAAATTAGTCTTTCCACATCCACTCTTTCCAATAATACAACCTCTTATTGATTGAGGAAGTAAAGGATTATTATTTCTTTCAGGATAATAATTTTTGACACTATAATCATTAAATTCACTATTTGAGAAAGACATTCTTCTTTAGAAAATATTTTTTTTATTTAAATGACAACATTATTTCTCAATTTGCACAGAATTAATGAAAAAACATTTTATTTTGATTTTCCTCCAAGTAATAAAATAAATGAGCTTGCAGTAGTCAAAGTTGATGGTATTCTTCAGTTACTAGAAGGATCTGAAAGACATTCACCTGGTGAAGGTAATAAAAATCTAGATTTTGTTTATCTATCTTGCAATCTAGTTTGTGATACTTTTATCAATGAAAGACAAAGCAACGTTATTTGTAAATTTCCAATTCTTAAAGATAATGAAAAAATAAAAAATGAACCAATTAACCCAATTTATCACAAACTTACGGATAGACCAAATGTTTTAACTCTCAAGCTTGTTGACTCTTTGAATAATCTTATCGATTTCAATAGGTGTGATCTTCATGTAGAATTACACTTGAAAACAGCGTAAGCAACTCAAATCCTTTTAAAACCAGATCCACGTTTTAGAGCTCTAAGAAATGCTGCATTCTTTTTATTCAAACCTTCGGTTCTATTAGTATTCAACGATTTTTGAGTAATACTTGCTCCTTCACTTACTTTTTTATTGTTTTCTATTTTTTCTTCATCTAGATTGTCAACTAGTTGTATTTTATCTTTCTCTTTTGGAGTTATAATAATGAAACTCCTTTCGGAACTTGATGTTTCTTTGAAATCAGAATTGAAGAATCTCATTGTAAAATA</canonical>
            <polymorphic>TCTTTTTTACTCAATCCTTCATTCATTCCATTAATTAATGCTTGATAACAAGGTTGAAATAAGGTTGTACTAAAGATATAAAGGTTATCATAATTAAGGTATTCTTCTCCTTTACCATTAGGTGAATCTAATAGCAAATTCATAAGTAAATTAGTCTTTCCACATCCACTCTTTCCAATAATACAACCTCTTATTGATTGAGGAAGTAAAGGATTATTATTTCTTTCAGGATAATAATTTTTGACACTATAATCATTAAATTCACTATTTGAGAAAGACATTCTTCTTTAGAAAATATTTTTTTTATTTAAATGACAACATTATTTCTCAATTTGCACAGAATTAATGAAAAAACATTTTATTTTGATTTTCCTCCAAGTAATAAAATAAATGAGCTTGCAGTAGTCAAAGTTGATGGTATTCTTCAGTTACTAGAAGGATCTGAAAGACATTCACCTGGTGAAGGTAATAAAAATCTAGATTTTGTTTATCTATCTTGYAATCTAGTTTGTGATACTTTTATCAATGAAAGACAAAGCAACGTTATTTGTAAATTTCCAATTCTTAAAGATAATGAAAAAATAAAAAATGAACCAATTAACCCAATTTATCACAAACTTACGGATAGACCAAATGTTTTAACTCTCAAGCTTGTTGACTCTTTGAATAATCTTATCGATTTCAATAGGTGTGATCTTCATGTAGAATTACACTTGAAAACAGCGTAAGCAACTCAAATCCTTTTAAAACCAGATCCACGTTTTAGAGCTCTAAGAAATGCTGCATTCTTTTTATTCAAACCTTCGGTTCTATTAGTATTCAACGATTTTTGAGTAATACTTGCTCCTTCACTTACTTTTTTATTGTTTTCTATTTTTTCTTCATCTAGATTGTCAACTAGTTGTATTTTATCTTTCTCTTTTGGAGTTATAATAATGAAACTCCTTTCGGAACTTGATGTTTCTTTGAAATCAGAATTGAAGAATCTCATTGTAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>335 284 217 100 64</canonical_bands>
                <polymorphic_bands>384 335 217 64</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAGTAGTCAAAGTTGATGGTAT</pcr_primer_p1>
		<pcr_primer_p2>TTGAGAGTTAAAACATTTGGTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCAGTAGTCAAAGTTGATGGTATTCTTCAGTTACTAGAAGGATCTGAAAGACATTCACCTGGTGAAGGTAATAAAAATCTAGATTTTGTTTATCTATCTTGCAATCTAGTTTGTGATACTTTTATCAATGAAAGACAAAGCAACGTTATTTGTAAATTTCCAATTCTTAAAGATAATGAAAAAATAAAAAATGAACCAATTAACCCAATTTATCACAAACTTACGGATAGACCAAATGTTTTAACTCTCAA</canonical_amplicon>
		<polymorphic_amplicon>GCAGTAGTCAAAGTTGATGGTATTCTTCAGTTACTAGAAGGATCTGAAAGACATTCACCTGGTGAAGGTAATAAAAATCTAGATTTTGTTTATCTATCTTGYAATCTAGTTTGTGATACTTTTATCAATGAAAGACAAAGCAACGTTATTTGTAAATTTCCAATTCTTAAAGATAATGAAAAAATAAAAAATGAACCAATTAACCCAATTTATCACAAACTTACGGATAGACCAAATGTTTTAACTCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31790</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>482705</contig_pos>
        <strand></strand>
        <context>ctctctcttc[G/A]ctctctctgc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACTCTGATCACCCAAAAAAAGACAACTTTTCTCTCTCTCTCTCTCTCTTC</left_flank>
        <right_flank>CTCTCTCTGCTCTCTATTCTACTCTAATCTCCTCTTTTTGATAAGCGATC</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTAAAAAAGAAAGATAGAAGATTCAGCTTGCAAGATTAACTATTTTTAGGCTTTTTTTCTGAATTATTCATCTTTTTTCAAGCTGAACTATTCCATATTTGAAATGCGGTAAATTTTATGATTTTCAACCTCTGACCTCTGCTTCGTGAACATCAATTACATCGGCTCTGTGTGGGTGATATCCGTCAGGGGATGGTTTTGACTTGCCTCGAAACATATGCGTCAGCCCCGAGACCTAATGAGACTTTACACCATCAGAGTGAGGGTCTGCCATACGCCTCGCATCCCACCGTGCTGTCCCATTTCCTCAAATCAGAAGAGATAGTTCTTTAGCTCAACAAATTTCTTATTTTTATTAGCGCCCACACAATCCAATACAAAACGCGTCTTGATTCTTTTAATTTGACTGTTAAACGCCTCGGTAAATTTGAGAGAGGCCCTGCAGAACTCTGATCACCCAAAAAAAGACAACTTTTCTCTCTCTCTCTCTCTCTTCGCTCTCTCTGCTCTCTATTCTACTCTAATCTCCTCTTTTTGATAAGCGATCTCAGCTCCGATAAGGCCGCCAGCAGTACTTATGACCGTCTCCCGGCCGAGCAGCCCCTCCGCTTTCTCTTTCTCTCCCTTTATCTCCCTTTTACTACGCAAACAGATTATTATAGCCTGTTCACTGAAAAGAGTCCTAAAAACCGTGAAAGTAGTGGGAAAATCTAGGATAATCCGACGTTTGTTGGACATCCTAGTTCTGCTTCTGCATTATCATTTCTATTACACTCCTAATGCTAGCATATCTCCTCCACTTTCTACAATAAATCCTAAAATATTGCTGCTATATTACCGATCCTTTCTCATTTCGCATGGATAGGACCGCGGATCTGGAAGAGCAGAACCTCAATCTTCCTACTCTATAACTGTTTTCCTTATCTTTATATCCCTCCAATTATTCAGATACTCTCACTTTTCAGCTTCTCTTGAAAGATGGCTCAACCTGTAAATT</canonical>
            <polymorphic>GTTTTAAAAAAGAAAGATAGAAGATTCAGCTTGCAAGATTAACTATTTTTAGGCTTTTTTTCTGAATTATTCATCTTTTTTCAAGCTGAACTATTCCATATTTGAAATGCGGTAAATTTTATGATTTTCAACCTCTGACCTCTGCTTCGTGAACATCAATTACATCGGCTCTGTGTGGGTGATATCCGTCAGGGGATGGTTTTGACTTGCCTCGAAACATATGCGTCAGCCCCGAGACCTAATGAGACTTTACACCATCAGAGTGAGGGTCTGCCATACGCCTCGCATCCCACCGTGCTGTCCCATTTCCTCAAATCAGAAGAGATAGTTCTTTAGCTCAACAAATTTCTTATTTTTATTAGCGCCCACACAATCCAATACAAAACGCGTCTTGATTCTTTTAATTTGACTGTTAAACGCCTCGGTAAATTTGAGAGAGGCCCTGCAGAACTCTGATCACCCAAAAAAAGACAACTTTTCTCTCTCTCTCTCTCTCTTCRCTCTCTCTGCTCTCTATTCTACTCTAATCTCCTCTTTTTGATAAGCGATCTCAGCTCCGATAAGGCCGCCAGCAGTACTTATGACCGTCTCCCGGCCGAGCAGCCCCTCCGCTTTCTCTTTCTCTCCCTTTATCTCCCTTTTACTACGCAAACAGATTATTATAGCCTGTTCACTGAAAAGAGTCCTAAAAACCGTGAAAGTAGTGGGAAAATCTAGGATAATCCGACGTTTGTTGGACATCCTAGTTCTGCTTCTGCATTATCATTTCTATTACACTCCTAATGCTAGCATATCTCCTCCACTTTCTACAATAAATCCTAAAATATTGCTGCTATATTACCGATCCTTTCTCATTTCGCATGGATAGGACCGCGGATCTGGAAGAGCAGAACCTCAATCTTCCTACTCTATAACTGTTTTCCTTATCTTTATATCCCTCCAATTATTCAGATACTCTCACTTTTCAGCTTCTCTTGAAAGATGGCTCAACCTGTAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>506 449 45</canonical_bands>
                <polymorphic_bands>551 449</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTCTTGATTCTTTTAATTTGAC</pcr_primer_p1>
		<pcr_primer_p2>GAGATAAAGGGAGAGAAAGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGTCTTGATTCTTTTAATTTGACTGTTAAACGCCTCGGTAAATTTGAGAGAGGCCCTGCAGAACTCTGATCACCCAAAAAAAGACAACTTTTCTCTCTCTCTCTCTCTCTTCGCTCTCTCTGCTCTCTATTCTACTCTAATCTCCTCTTTTTGATAAGCGATCTCAGCTCCGATAAGGCCGCCAGCAGTACTTATGACCGTCTCCCGGCCGAGCAGCCCCTCCGCTTTCTCTTTCTCTCCCTTTATCTC</canonical_amplicon>
		<polymorphic_amplicon>CGTCTTGATTCTTTTAATTTGACTGTTAAACGCCTCGGTAAATTTGAGAGAGGCCCTGCAGAACTCTGATCACCCAAAAAAAGACAACTTTTCTCTCTCTCTCTCTCTCTTCRCTCTCTCTGCTCTCTATTCTACTCTAATCTCCTCTTTTTGATAAGCGATCTCAGCTCCGATAAGGCCGCCAGCAGTACTTATGACCGTCTCCCGGCCGAGCAGCCCCTCCGCTTTCTCTTTCTCTCCCTTTATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31791</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>494767</contig_pos>
        <strand>+</strand>
        <context>TAGAATGTTC[A/G]ATGCAGAGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACCGATTAATTCACTTCAGGGAATGAGCAGAGGAATCAGTAGAATGTTC</left_flank>
        <right_flank>ATGCAGAGCAAAAAACTTATCGAAAGTATCTTGGCAATAATATTCCAGAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAATGATATCAGGAACTAGTGTTCTCGAAAAAATTCTCGAATCTGAAACCGGTTTGATGTTTTTATTTTCGAGTTAAAAAAAACAAATTGATGAATCATTTCAGTCTATCAAATGGTTTTTTGACGGAATGAAAGTGGGATGCGAGAACTTTCTGCGAGACAAAAATGTTTTCGATTTGATGAAGTCTCGAAACTTCGACGTCGCGATTTTGGAACCACTATCCGTTTGTGGACTTGGATTTTTTGAAAAATTGGGAATCGAGAAAACGATTTTGGCGTCTTCATGTGCAAACTATGACTATTTATTCCGACATTTGGGTGAACCAAATGAATACAGTTATGTTCCATCTTTGATGAGTACAAAAGGAGAGAAGATGAACTTTTTCGAGAGATTTGAGAATTATAAAGTTTCAGAAGTAAGAAATAAACTAACATTTTAATAATAAAAACCGATTAATTCACTTCAGGGAATGAGCAGAGGAATCAGTAGAATGTTCGATGCAGAGCAAAAAACTTATCGAAAGTATCTTGGCAATAATATTCCAGATTGGAGAGATTTACTTCCAGCTGCTTCTTTGTTTTTCACGAATTCCAATCCATATTTGGACTTTCCACGACCTGTTCTTCAGAAGACTGTTCCAATTGGTGGAATATCAGTTGATATGGAGAAAATAAGATCACACAAACTGAATGAAGAATGGAACTTTGTTCTGAATCAAAGGAAACATAATCTACTGATATCATTTGGCTCAATGGTCCACTCGTCTCATATGCATACTGAAGCAAGGGACAATATACTAAAAGTGATTCGATCAGAACCAAATGTCACTTTTATTTGGAAATATGAAACCAATGAAACATCATTCGCCAATGGAATTCCAAATATTCATTTCTCCAAATGGGTTCCTCAACCAAATCTTCTCGGAGATCCCAGAATTTCTGCTTTTCTCACACATGGAGGACTTGGAAGTACAAATGAATTGGCTCATTGTGGGAAG</canonical>
            <polymorphic>AAGAATGATATCAGGAACTAGTGTTCTCGAAAAAATTCTCGAATCTGAAACCGGTTTGATGTTTTTATTTTCGAGTTAAAAAAAACAAATTGATGAATCATTTCAGTCTATCAAATGGTTTTTTGACGGAATGAAAGTGGGATGCGAGAACTTTCTGCGAGACAAAAATGTTTTCGATTTGATGAAGTCTCGAAACTTCGACGTCGCGATTTTGGAACCACTATCCGTTTGTGGACTTGGATTTTTTGAAAAATTGGGAATCGAGAAAACGATTTTGGCGTCTTCATGTGCAAACTATGACTATTTATTCCGACATTTGGGTGAACCAAATGAATACAGTTATGTTCCATCTTTGATGAGTACAAAAGGAGAGAAGATGAACTTTTTCGAGAGATTTGAGAATTATAAAGTTTCAGAAGTAAGAAATAAACTAACATTTTAATAATAAAAACCGATTAATTCACTTCAGGGAATGAGCAGAGGAATCAGTAGAATGTTCRATGCAGAGCAAAAAACTTATCGAAAGTATCTTGGCAATAATATTCCAGATTGGAGAGATTTACTTCCAGCTGCTTCTTTGTTTTTCACGAATTCCAATCCATATTTGGACTTTCCACGACCTGTTCTTCAGAAGACTGTTCCAATTGGTGGAATATCAGTTGATATGGAGAAAATAAGATCACACAAACTGAATGAAGAATGGAACTTTGTTCTGAATCAAAGGAAACATAATCTACTGATATCATTTGGCTCAATGGTCCACTCGTCTCATATGCATACTGAAGCAAGGGACAATATACTAAAAGTGATTCGATCAGAACCAAATGTCACTTTTATTTGGAAATATGAAACCAATGAAACATCATTCGCCAATGGAATTCCAAATATTCATTTCTCCAAATGGGTTCCTCAACCAAATCTTCTCGGAGATCCCAGAATTTCTGCTTTTCTCACACATGGAGGACTTGGAAGTACAAATGAATTGGCTCATTGTGGGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>291 188 126 111 103 63 32 28 22 16 12 8</canonical_bands>
                <polymorphic_bands>291 188 133 126 103 63 32 28 16 12 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACCGATTAATTCACTTCAG</pcr_primer_p1>
		<pcr_primer_p2>TTCATTCAGTTTGTGTGATCTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAACCGATTAATTCACTTCAGGGAATGAGCAGAGGAATCAGTAGAATGTTCGATGCAGAGCAAAAAACTTATCGAAAGTATCTTGGCAATAATATTCCAGATTGGAGAGATTTACTTCCAGCTGCTTCTTTGTTTTTCACGAATTCCAATCCATATTTGGACTTTCCACGACCTGTTCTTCAGAAGACTGTTCCAATTGGTGGAATATCAGTTGATATGGAGAAAATAAGATCACACAAACTGAATGAA</canonical_amplicon>
		<polymorphic_amplicon>AAAACCGATTAATTCACTTCAGGGAATGAGCAGAGGAATCAGTAGAATGTTCRATGCAGAGCAAAAAACTTATCGAAAGTATCTTGGCAATAATATTCCAGATTGGAGAGATTTACTTCCAGCTGCTTCTTTGTTTTTCACGAATTCCAATCCATATTTGGACTTTCCACGACCTGTTCTTCAGAAGACTGTTCCAATTGGTGGAATATCAGTTGATATGGAGAAAATAAGATCACACAAACTGAATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31792</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>531584</contig_pos>
        <strand>+</strand>
        <context>TCAAGAGAAG[A/G]WRAGGGGTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATACCAATTTCAGGTATGACGGCGAAATAGAGGTGCAGCATCAAGAGAAG</left_flank>
        <right_flank>GTAGGGGTGGCAAATCAAACCAAAATGAGATGAATCCTTCGTGTTGCGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTTTACTTTTGAACAAATTTTCCATCTGCTTAAGAAAACAAAAAGGCGAAATACGAGAACTTGGAAGCTCAGAGCCCACCGCTCTCTATTTTTATTTCACAAAGCCCATGAAAATCCTTGAACTTTAACCACTTGTGAAGTAGGACGAACAATACAACGAGAAACTTTGATTTCGATAGCAGCTAAGCACACACAATCATTTATGTGAATCCACACTTAATTTCTCAAAGTTTATGGAAGTGGGAAAAGAATGAAGAAGGGGAAAGAAGGGGGAAAATTGAATTTCGGCAAGAAAAAGAAAAGTCCGTTCTAGACAACAACGTGTTCTCTCTTCAAATCCAAATATGAAATGGCTTCAGTTGAGAATGCAGACAGAAAAAAAAGGTGGGTCGCCGTTCAACCTCTTCTGCCCCTCTATTCACCTGTCAACATGCATTTGTCTTGGGATACCAATTTCAGGTATGACGGCGAAATAGAGGTGCAGCATCAAGAGAAGTGTAGGGGTGGCAAATCAAACCAAAATGAGATGAATCCTTCGTGTTGCGAAGTGAAGAAAATGAGAGGAGAAGAAGAAAGAAGAAGGGAAGAAGATGGGAGTCGGAAGGAAGGATAGTTGGCTACCAATGGGTTTCGCGGCTGCTAATATAAACAACGTCCACTCAAAACTTTTCTTCAAGAAACGATTCTATGCCTTCTTCATTTTCTTATATTCTCTTTTTGTTTCTGAAGAGGTAAGAAAAGTCACCTTAATTCTACCAAATCCTGACAGCTGTCCACTTCAGCGCGAGTGAAATAACAGCTGCCAGGAGGAGAAGAAGGTCGCAAAGAAGTCCATCGAGAATGAGGGGTCACCTGTGTAAGGCTGTAATTTGGGGAGGAGAACATTGTGTGAAGCTGGCATTTTATGTCACACATCCAGGTTCCTTCGAATAGTGTCCGGAATAGGAGAAATCGGAAAAAAGAGAATCGTCGAGTGTGCAGATGTAAATGTTATACA</canonical>
            <polymorphic>TTCTTTTACTTTTGAACAAATTTTCCATCTGCTTAAGAAAACAAAAAGGCGAAATACGAGAACTTGGAAGCTCAGAGCCCACCGCTCTCTATTTTTATTTCACAAAGCCCATGAAAATCCTTGAACTTTAACCACTTGTGAAGTAGGACGAACAATACAACGAGAAACTTTGATTTCGATAGCAGCTAAGCACACACAATCATTTATGTGAATCCACACTTAATTTCTCAAAGTTTATGGAAGTGGGAAAAGAATGAAGAAGGGGAAAGAAGGGGGAAAATTGAATTTCGGCAAGAAAAAGAAAAGTCCGTTCTAGACAACAACGTGTTCTCTCTTCAAATCCAAATATGAAATGGCTTCAGTTGAGAATGCAGACAGAAAAAAAAGGTGGGTCGCCGTTCAACCTCTTCTGCCCCTCTATTCACCTGTCAACATGCATTTGTCTTGGGATACCAATTTCAGGTATGACGGCGAAATAGAGGTGCAGCATCAAGAGAAGRGTAGGGGTGGCAAATCAAACCAAAATGAGATGAATCCTTCGTGTTGCGAAGTGAAGAAAATGAGAGGAGAAGAAGAAAGAAGAAGGGAAGAAGATGGGAGTCGGAAGGAAGGATAGTTGGCTACCAATGGGTTTCGCGGCTGCTAATATAAACAACGTCCACTCAAAACTTTTCTTCAAGAAACGATTCTATGCCTTCTTCATTTTCTTATATTCTCTTTTTGTTTCTGAAGAGGTAAGAAAAGTCACCTTAATTCTACCAAATCCTGACAGCTGTCCACTTCAGCGCGAGTGAAATAACAGCTGCCAGGAGGAGAAGAAGGTCGCAAAGAAGTCCATCGAGAATGAGGGGTCACCTGTGTAAGGCTGTAATTTGGGGAGGAGAACATTGTGTGAAGCTGGCATTTTATGTCACACATCCAGGTTCCTTCGAATAGTGTCCGGAATAGGAGAAATCGGAAAAAAGAGAATCGTCGAGTGTGCAGATGTAAATGTTATACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>108 86 82 81 63 61 60 52 41 34 34 32 32 32 27 23 21 19 19 17 14 14 10 8 6 6 6 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>108 86 82 81 63 61 60 52 41 34 34 32 32 32 27 25 23 21 19 19 14 14 10 6 6 6 2 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATGAAATGGCTTCAGTTGAG</pcr_primer_p1>
		<pcr_primer_p2>ATCTTCTTCCCTTCTTCTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATGAAATGGCTTCAGTTGAGAATGCAGACAGAAAAAAAAGGTGGGTCGCCGTTCAACCTCTTCTGCCCCTCTATTCACCTGTCAACATGCATTTGTCTTGGGATACCAATTTCAGGTATGACGGCGAAATAGAGGTGCAGCATCAAGAGAAGTGTAGGGGTGGCAAATCAAACCAAAATGAGATGAATCCTTCGTGTTGCGAAGTGAAGAAAATGAGAGGAGAAGAAGAAAGAAGAAGGGAAGAAGAT</canonical_amplicon>
		<polymorphic_amplicon>ATATGAAATGGCTTCAGTTGAGAATGCAGACAGAAAAAAAAGGTGGGTCGCCGTTCAACCTCTTCTGCCCCTCTATTCACCTGTCAACATGCATTTGTCTTGGGATACCAATTTCAGGTATGACGGCGAAATAGAGGTGCAGCATCAAGAGAAGRGTAGGGGTGGCAAATCAAACCAAAATGAGATGAATCCTTCGTGTTGCGAAGTGAAGAAAATGAGAGGAGAAGAAGAAAGAAGAAGGGAAGAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31793</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>531585</contig_pos>
        <strand>+</strand>
        <context>CAAGAGAAGR[A/T]RAGGGGTGGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TACCAATTTCAGGTATGACGGCGAAATAGAGGTGCAGCATCAAGAGAAGT</left_flank>
        <right_flank>TAGGGGTGGCAAATCAAACCAAAATGAGATGAATCCTTCGTGTTGCGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTTTACTTTTGAACAAATTTTCCATCTGCTTAAGAAAACAAAAAGGCGAAATACGAGAACTTGGAAGCTCAGAGCCCACCGCTCTCTATTTTTATTTCACAAAGCCCATGAAAATCCTTGAACTTTAACCACTTGTGAAGTAGGACGAACAATACAACGAGAAACTTTGATTTCGATAGCAGCTAAGCACACACAATCATTTATGTGAATCCACACTTAATTTCTCAAAGTTTATGGAAGTGGGAAAAGAATGAAGAAGGGGAAAGAAGGGGGAAAATTGAATTTCGGCAAGAAAAAGAAAAGTCCGTTCTAGACAACAACGTGTTCTCTCTTCAAATCCAAATATGAAATGGCTTCAGTTGAGAATGCAGACAGAAAAAAAAGGTGGGTCGCCGTTCAACCTCTTCTGCCCCTCTATTCACCTGTCAACATGCATTTGTCTTGGGATACCAATTTCAGGTATGACGGCGAAATAGAGGTGCAGCATCAAGAGAAGTGTAGGGGTGGCAAATCAAACCAAAATGAGATGAATCCTTCGTGTTGCGAAGTGAAGAAAATGAGAGGAGAAGAAGAAAGAAGAAGGGAAGAAGATGGGAGTCGGAAGGAAGGATAGTTGGCTACCAATGGGTTTCGCGGCTGCTAATATAAACAACGTCCACTCAAAACTTTTCTTCAAGAAACGATTCTATGCCTTCTTCATTTTCTTATATTCTCTTTTTGTTTCTGAAGAGGTAAGAAAAGTCACCTTAATTCTACCAAATCCTGACAGCTGTCCACTTCAGCGCGAGTGAAATAACAGCTGCCAGGAGGAGAAGAAGGTCGCAAAGAAGTCCATCGAGAATGAGGGGTCACCTGTGTAAGGCTGTAATTTGGGGAGGAGAACATTGTGTGAAGCTGGCATTTTATGTCACACATCCAGGTTCCTTCGAATAGTGTCCGGAATAGGAGAAATCGGAAAAAAGAGAATCGTCGAGTGTGCAGATGTAAATGTTATACAT</canonical>
            <polymorphic>TCTTTTACTTTTGAACAAATTTTCCATCTGCTTAAGAAAACAAAAAGGCGAAATACGAGAACTTGGAAGCTCAGAGCCCACCGCTCTCTATTTTTATTTCACAAAGCCCATGAAAATCCTTGAACTTTAACCACTTGTGAAGTAGGACGAACAATACAACGAGAAACTTTGATTTCGATAGCAGCTAAGCACACACAATCATTTATGTGAATCCACACTTAATTTCTCAAAGTTTATGGAAGTGGGAAAAGAATGAAGAAGGGGAAAGAAGGGGGAAAATTGAATTTCGGCAAGAAAAAGAAAAGTCCGTTCTAGACAACAACGTGTTCTCTCTTCAAATCCAAATATGAAATGGCTTCAGTTGAGAATGCAGACAGAAAAAAAAGGTGGGTCGCCGTTCAACCTCTTCTGCCCCTCTATTCACCTGTCAACATGCATTTGTCTTGGGATACCAATTTCAGGTATGACGGCGAAATAGAGGTGCAGCATCAAGAGAAGTWTAGGGGTGGCAAATCAAACCAAAATGAGATGAATCCTTCGTGTTGCGAAGTGAAGAAAATGAGAGGAGAAGAAGAAAGAAGAAGGGAAGAAGATGGGAGTCGGAAGGAAGGATAGTTGGCTACCAATGGGTTTCGCGGCTGCTAATATAAACAACGTCCACTCAAAACTTTTCTTCAAGAAACGATTCTATGCCTTCTTCATTTTCTTATATTCTCTTTTTGTTTCTGAAGAGGTAAGAAAAGTCACCTTAATTCTACCAAATCCTGACAGCTGTCCACTTCAGCGCGAGTGAAATAACAGCTGCCAGGAGGAGAAGAAGGTCGCAAAGAAGTCCATCGAGAATGAGGGGTCACCTGTGTAAGGCTGTAATTTGGGGAGGAGAACATTGTGTGAAGCTGGCATTTTATGTCACACATCCAGGTTCCTTCGAATAGTGTCCGGAATAGGAGAAATCGGAAAAAAGAGAATCGTCGAGTGTGCAGATGTAAATGTTATACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>108 86 82 80 63 61 60 52 41 34 34 32 32 32 27 23 21 20 19 17 14 14 10 8 6 6 6 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>108 86 82 80 63 61 60 52 41 34 34 32 32 32 27 25 23 21 20 19 14 14 10 6 6 6 2 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATGAAATGGCTTCAGTTGAG</pcr_primer_p1>
		<pcr_primer_p2>ATCTTCTTCCCTTCTTCTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATGAAATGGCTTCAGTTGAGAATGCAGACAGAAAAAAAAGGTGGGTCGCCGTTCAACCTCTTCTGCCCCTCTATTCACCTGTCAACATGCATTTGTCTTGGGATACCAATTTCAGGTATGACGGCGAAATAGAGGTGCAGCATCAAGAGAAGTGTAGGGGTGGCAAATCAAACCAAAATGAGATGAATCCTTCGTGTTGCGAAGTGAAGAAAATGAGAGGAGAAGAAGAAAGAAGAAGGGAAGAAGAT</canonical_amplicon>
		<polymorphic_amplicon>ATATGAAATGGCTTCAGTTGAGAATGCAGACAGAAAAAAAAGGTGGGTCGCCGTTCAACCTCTTCTGCCCCTCTATTCACCTGTCAACATGCATTTGTCTTGGGATACCAATTTCAGGTATGACGGCGAAATAGAGGTGCAGCATCAAGAGAAGTWTAGGGGTGGCAAATCAAACCAAAATGAGATGAATCCTTCGTGTTGCGAAGTGAAGAAAATGAGAGGAGAAGAAGAAAGAAGAAGGGAAGAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31794</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>531586</contig_pos>
        <strand>+</strand>
        <context>AAGAGAAGRW[A/G]AGGGGTGGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCAATTTCAGGTATGACGGCGAAATAGAGGTGCAGCATCAAGAGAAGTG</left_flank>
        <right_flank>AGGGGTGGCAAATCAAACCAAAATGAGATGAATCCTTCGTGTTGCGAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTACTTTTGAACAAATTTTCCATCTGCTTAAGAAAACAAAAAGGCGAAATACGAGAACTTGGAAGCTCAGAGCCCACCGCTCTCTATTTTTATTTCACAAAGCCCATGAAAATCCTTGAACTTTAACCACTTGTGAAGTAGGACGAACAATACAACGAGAAACTTTGATTTCGATAGCAGCTAAGCACACACAATCATTTATGTGAATCCACACTTAATTTCTCAAAGTTTATGGAAGTGGGAAAAGAATGAAGAAGGGGAAAGAAGGGGGAAAATTGAATTTCGGCAAGAAAAAGAAAAGTCCGTTCTAGACAACAACGTGTTCTCTCTTCAAATCCAAATATGAAATGGCTTCAGTTGAGAATGCAGACAGAAAAAAAAGGTGGGTCGCCGTTCAACCTCTTCTGCCCCTCTATTCACCTGTCAACATGCATTTGTCTTGGGATACCAATTTCAGGTATGACGGCGAAATAGAGGTGCAGCATCAAGAGAAGTGTAGGGGTGGCAAATCAAACCAAAATGAGATGAATCCTTCGTGTTGCGAAGTGAAGAAAATGAGAGGAGAAGAAGAAAGAAGAAGGGAAGAAGATGGGAGTCGGAAGGAAGGATAGTTGGCTACCAATGGGTTTCGCGGCTGCTAATATAAACAACGTCCACTCAAAACTTTTCTTCAAGAAACGATTCTATGCCTTCTTCATTTTCTTATATTCTCTTTTTGTTTCTGAAGAGGTAAGAAAAGTCACCTTAATTCTACCAAATCCTGACAGCTGTCCACTTCAGCGCGAGTGAAATAACAGCTGCCAGGAGGAGAAGAAGGTCGCAAAGAAGTCCATCGAGAATGAGGGGTCACCTGTGTAAGGCTGTAATTTGGGGAGGAGAACATTGTGTGAAGCTGGCATTTTATGTCACACATCCAGGTTCCTTCGAATAGTGTCCGGAATAGGAGAAATCGGAAAAAAGAGAATCGTCGAGTGTGCAGATGTAAATGTTATACATC</canonical>
            <polymorphic>CTTTTACTTTTGAACAAATTTTCCATCTGCTTAAGAAAACAAAAAGGCGAAATACGAGAACTTGGAAGCTCAGAGCCCACCGCTCTCTATTTTTATTTCACAAAGCCCATGAAAATCCTTGAACTTTAACCACTTGTGAAGTAGGACGAACAATACAACGAGAAACTTTGATTTCGATAGCAGCTAAGCACACACAATCATTTATGTGAATCCACACTTAATTTCTCAAAGTTTATGGAAGTGGGAAAAGAATGAAGAAGGGGAAAGAAGGGGGAAAATTGAATTTCGGCAAGAAAAAGAAAAGTCCGTTCTAGACAACAACGTGTTCTCTCTTCAAATCCAAATATGAAATGGCTTCAGTTGAGAATGCAGACAGAAAAAAAAGGTGGGTCGCCGTTCAACCTCTTCTGCCCCTCTATTCACCTGTCAACATGCATTTGTCTTGGGATACCAATTTCAGGTATGACGGCGAAATAGAGGTGCAGCATCAAGAGAAGTGRAGGGGTGGCAAATCAAACCAAAATGAGATGAATCCTTCGTGTTGCGAAGTGAAGAAAATGAGAGGAGAAGAAGAAAGAAGAAGGGAAGAAGATGGGAGTCGGAAGGAAGGATAGTTGGCTACCAATGGGTTTCGCGGCTGCTAATATAAACAACGTCCACTCAAAACTTTTCTTCAAGAAACGATTCTATGCCTTCTTCATTTTCTTATATTCTCTTTTTGTTTCTGAAGAGGTAAGAAAAGTCACCTTAATTCTACCAAATCCTGACAGCTGTCCACTTCAGCGCGAGTGAAATAACAGCTGCCAGGAGGAGAAGAAGGTCGCAAAGAAGTCCATCGAGAATGAGGGGTCACCTGTGTAAGGCTGTAATTTGGGGAGGAGAACATTGTGTGAAGCTGGCATTTTATGTCACACATCCAGGTTCCTTCGAATAGTGTCCGGAATAGGAGAAATCGGAAAAAAGAGAATCGTCGAGTGTGCAGATGTAAATGTTATACATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATGAAATGGCTTCAGTTGAG</pcr_primer_p1>
		<pcr_primer_p2>ATCTTCTTCCCTTCTTCTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATGAAATGGCTTCAGTTGAGAATGCAGACAGAAAAAAAAGGTGGGTCGCCGTTCAACCTCTTCTGCCCCTCTATTCACCTGTCAACATGCATTTGTCTTGGGATACCAATTTCAGGTATGACGGCGAAATAGAGGTGCAGCATCAAGAGAAGTGTAGGGGTGGCAAATCAAACCAAAATGAGATGAATCCTTCGTGTTGCGAAGTGAAGAAAATGAGAGGAGAAGAAGAAAGAAGAAGGGAAGAAGAT</canonical_amplicon>
		<polymorphic_amplicon>ATATGAAATGGCTTCAGTTGAGAATGCAGACAGAAAAAAAAGGTGGGTCGCCGTTCAACCTCTTCTGCCCCTCTATTCACCTGTCAACATGCATTTGTCTTGGGATACCAATTTCAGGTATGACGGCGAAATAGAGGTGCAGCATCAAGAGAAGTGRAGGGGTGGCAAATCAAACCAAAATGAGATGAATCCTTCGTGTTGCGAAGTGAAGAAAATGAGAGGAGAAGAAGAAAGAAGAAGGGAAGAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31795</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>531605</contig_pos>
        <strand>+</strand>
        <context>CAAATCAAAC[A/T]AAAATGAGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCGAAATAGAGGTGCAGCATCAAGAGAAGTGTAGGGGTGGCAAATCAAAC</left_flank>
        <right_flank>AAAATGAGATGAATCCTTCGTGTTGCGAAGTGAAGAAAATGAGAGGAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCATCTGCTTAAGAAAACAAAAAGGCGAAATACGAGAACTTGGAAGCTCAGAGCCCACCGCTCTCTATTTTTATTTCACAAAGCCCATGAAAATCCTTGAACTTTAACCACTTGTGAAGTAGGACGAACAATACAACGAGAAACTTTGATTTCGATAGCAGCTAAGCACACACAATCATTTATGTGAATCCACACTTAATTTCTCAAAGTTTATGGAAGTGGGAAAAGAATGAAGAAGGGGAAAGAAGGGGGAAAATTGAATTTCGGCAAGAAAAAGAAAAGTCCGTTCTAGACAACAACGTGTTCTCTCTTCAAATCCAAATATGAAATGGCTTCAGTTGAGAATGCAGACAGAAAAAAAAGGTGGGTCGCCGTTCAACCTCTTCTGCCCCTCTATTCACCTGTCAACATGCATTTGTCTTGGGATACCAATTTCAGGTATGACGGCGAAATAGAGGTGCAGCATCAAGAGAAGTGTAGGGGTGGCAAATCAAACCAAAATGAGATGAATCCTTCGTGTTGCGAAGTGAAGAAAATGAGAGGAGAAGAAGAAAGAAGAAGGGAAGAAGATGGGAGTCGGAAGGAAGGATAGTTGGCTACCAATGGGTTTCGCGGCTGCTAATATAAACAACGTCCACTCAAAACTTTTCTTCAAGAAACGATTCTATGCCTTCTTCATTTTCTTATATTCTCTTTTTGTTTCTGAAGAGGTAAGAAAAGTCACCTTAATTCTACCAAATCCTGACAGCTGTCCACTTCAGCGCGAGTGAAATAACAGCTGCCAGGAGGAGAAGAAGGTCGCAAAGAAGTCCATCGAGAATGAGGGGTCACCTGTGTAAGGCTGTAATTTGGGGAGGAGAACATTGTGTGAAGCTGGCATTTTATGTCACACATCCAGGTTCCTTCGAATAGTGTCCGGAATAGGAGAAATCGGAAAAAAGAGAATCGTCGAGTGTGCAGATGTAAATGTTATACATCAAAGCGGTACCAGGACATC</canonical>
            <polymorphic>TTTCCATCTGCTTAAGAAAACAAAAAGGCGAAATACGAGAACTTGGAAGCTCAGAGCCCACCGCTCTCTATTTTTATTTCACAAAGCCCATGAAAATCCTTGAACTTTAACCACTTGTGAAGTAGGACGAACAATACAACGAGAAACTTTGATTTCGATAGCAGCTAAGCACACACAATCATTTATGTGAATCCACACTTAATTTCTCAAAGTTTATGGAAGTGGGAAAAGAATGAAGAAGGGGAAAGAAGGGGGAAAATTGAATTTCGGCAAGAAAAAGAAAAGTCCGTTCTAGACAACAACGTGTTCTCTCTTCAAATCCAAATATGAAATGGCTTCAGTTGAGAATGCAGACAGAAAAAAAAGGTGGGTCGCCGTTCAACCTCTTCTGCCCCTCTATTCACCTGTCAACATGCATTTGTCTTGGGATACCAATTTCAGGTATGACGGCGAAATAGAGGTGCAGCATCAAGAGAAGTGTAGGGGTGGCAAATCAAACWAAAATGAGATGAATCCTTCGTGTTGCGAAGTGAAGAAAATGAGAGGAGAAGAAGAAAGAAGAAGGGAAGAAGATGGGAGTCGGAAGGAAGGATAGTTGGCTACCAATGGGTTTCGCGGCTGCTAATATAAACAACGTCCACTCAAAACTTTTCTTCAAGAAACGATTCTATGCCTTCTTCATTTTCTTATATTCTCTTTTTGTTTCTGAAGAGGTAAGAAAAGTCACCTTAATTCTACCAAATCCTGACAGCTGTCCACTTCAGCGCGAGTGAAATAACAGCTGCCAGGAGGAGAAGAAGGTCGCAAAGAAGTCCATCGAGAATGAGGGGTCACCTGTGTAAGGCTGTAATTTGGGGAGGAGAACATTGTGTGAAGCTGGCATTTTATGTCACACATCCAGGTTCCTTCGAATAGTGTCCGGAATAGGAGAAATCGGAAAAAAGAGAATCGTCGAGTGTGCAGATGTAAATGTTATACATCAAAGCGGTACCAGGACATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATGAAATGGCTTCAGTTGAG</pcr_primer_p1>
		<pcr_primer_p2>ATCTTCTTCCCTTCTTCTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATGAAATGGCTTCAGTTGAGAATGCAGACAGAAAAAAAAGGTGGGTCGCCGTTCAACCTCTTCTGCCCCTCTATTCACCTGTCAACATGCATTTGTCTTGGGATACCAATTTCAGGTATGACGGCGAAATAGAGGTGCAGCATCAAGAGAAGTGTAGGGGTGGCAAATCAAACCAAAATGAGATGAATCCTTCGTGTTGCGAAGTGAAGAAAATGAGAGGAGAAGAAGAAAGAAGAAGGGAAGAAGAT</canonical_amplicon>
		<polymorphic_amplicon>ATATGAAATGGCTTCAGTTGAGAATGCAGACAGAAAAAAAAGGTGGGTCGCCGTTCAACCTCTTCTGCCCCTCTATTCACCTGTCAACATGCATTTGTCTTGGGATACCAATTTCAGGTATGACGGCGAAATAGAGGTGCAGCATCAAGAGAAGTGTAGGGGTGGCAAATCAAACWAAAATGAGATGAATCCTTCGTGTTGCGAAGTGAAGAAAATGAGAGGAGAAGAAGAAAGAAGAAGGGAAGAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31796</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>549903</contig_pos>
        <strand>+</strand>
        <context>AAACAATCTA[A/G]AAGAATTGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGCACATTCCTTGGTCATACATTGGATGGAACAGATGGAAAACAATCTA</left_flank>
        <right_flank>AAGAATTGGTGCAAGTGGTCCGACTGGAGAGCTTTGTAAGTTTTCAAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAATGTTACCTATTTCAGTACAAGACGTCGGTATGGGGTACGTAAAACAGGAAAAACACCCACTCGAATACGAATATTTACAACCGGAGCATTTGAAAGGATTCGATTCTTACAAGGTTTGCATTTTATAATGTTCACTTAATAGCCATAAAAGTGCATATTTTCAGTATAACTGTGTCGACAACTCTCCATTATCAGTCTACGTCTCACACCCGTTTTGGAATTGGTTAGTAGAGGTGAGATAATTTTTAAGATAATAAAATCAAAGAACTCTAATATATTTTCAGTTCTATCCACGAACATGGGTCCCGAACGTACTAACACTCGTTGGATGGGGATTCGTTATGGCTGGATTTTTCATCGAAGGCTATCTTGATTATCGAATTGACAGAAACTCCGACGGATCTTTGAATCCAATTCCAGATTGGTTCTGGTTCGCAGCTGCTCTTTGCACATTCCTTGGTCATACATTGGATGGAACAGATGGAAAACAATCTAGAAGAATTGGTGCAAGTGGTCCGACTGGAGAGCTTTGTAAGTTTTCAAACTCTTCAATATTTTGAAATAAAATTTGTTTTAGTCGATCATGGCCTCGATTCTTGGTCAACTGTTCCATTCACCATTACAATTTTCTCAATTTTCGGACGTGGAAGGTTCAGTATATCGTCTGTTGAACTGTTATGTGTGCTGATCAGTACACAAATCGTGTTCTTCACCACACATTGGGAGAAGTACAATACTGGAATCATGTTCTTGTCCTGGGCCTACGATGTCAGCCAATTTGTAAGAGTGTTGAAAATCTCTATAATTTGAATGCTCTGTTTTTTTCAGGGTCTCGTTATTGTGTACCTCTGGACCTACGTCGTCGGTTACAAATGGTTCCATTTTGATTTGTTTGGTGTTAATTTCGCGCTCACATTTGAAATTGGATTTTACTGTTAGTTTTATCATTCAAATATTTCTGAAAAAATGTGTTCTTTTTTTAGTGTGCTGTCTGAT</canonical>
            <polymorphic>TAAATGTTACCTATTTCAGTACAAGACGTCGGTATGGGGTACGTAAAACAGGAAAAACACCCACTCGAATACGAATATTTACAACCGGAGCATTTGAAAGGATTCGATTCTTACAAGGTTTGCATTTTATAATGTTCACTTAATAGCCATAAAAGTGCATATTTTCAGTATAACTGTGTCGACAACTCTCCATTATCAGTCTACGTCTCACACCCGTTTTGGAATTGGTTAGTAGAGGTGAGATAATTTTTAAGATAATAAAATCAAAGAACTCTAATATATTTTCAGTTCTATCCACGAACATGGGTCCCGAACGTACTAACACTCGTTGGATGGGGATTCGTTATGGCTGGATTTTTCATCGAAGGCTATCTTGATTATCGAATTGACAGAAACTCCGACGGATCTTTGAATCCAATTCCAGATTGGTTCTGGTTCGCAGCTGCTCTTTGCACATTCCTTGGTCATACATTGGATGGAACAGATGGAAAACAATCTARAAGAATTGGTGCAAGTGGTCCGACTGGAGAGCTTTGTAAGTTTTCAAACTCTTCAATATTTTGAAATAAAATTTGTTTTAGTCGATCATGGCCTCGATTCTTGGTCAACTGTTCCATTCACCATTACAATTTTCTCAATTTTCGGACGTGGAAGGTTCAGTATATCGTCTGTTGAACTGTTATGTGTGCTGATCAGTACACAAATCGTGTTCTTCACCACACATTGGGAGAAGTACAATACTGGAATCATGTTCTTGTCCTGGGCCTACGATGTCAGCCAATTTGTAAGAGTGTTGAAAATCTCTATAATTTGAATGCTCTGTTTTTTTCAGGGTCTCGTTATTGTGTACCTCTGGACCTACGTCGTCGGTTACAAATGGTTCCATTTTGATTTGTTTGGTGTTAATTTCGCGCTCACATTTGAAATTGGATTTTACTGTTAGTTTTATCATTCAAATATTTCTGAAAAAATGTGTTCTTTTTTTAGTGTGCTGTCTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>356 309 147 76 64 48</canonical_bands>
                <polymorphic_bands>432 309 147 64 48</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTATCGAATTGACAGAAACTC</pcr_primer_p1>
		<pcr_primer_p2>TAATGGTGAATGGAACAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GATTATCGAATTGACAGAAACTCCGACGGATCTTTGAATCCAATTCCAGATTGGTTCTGGTTCGCAGCTGCTCTTTGCACATTCCTTGGTCATACATTGGATGGAACAGATGGAAAACAATCTAGAAGAATTGGTGCAAGTGGTCCGACTGGAGAGCTTTGTAAGTTTTCAAACTCTTCAATATTTTGAAATAAAATTTGTTTTAGTCGATCATGGCCTCGATTCTTGGTCAACTGTTCCATTCACCATTA</canonical_amplicon>
		<polymorphic_amplicon>GATTATCGAATTGACAGAAACTCCGACGGATCTTTGAATCCAATTCCAGATTGGTTCTGGTTCGCAGCTGCTCTTTGCACATTCCTTGGTCATACATTGGATGGAACAGATGGAAAACAATCTARAAGAATTGGTGCAAGTGGTCCGACTGGAGAGCTTTGTAAGTTTTCAAACTCTTCAATATTTTGAAATAAAATTTGTTTTAGTCGATCATGGCCTCGATTCTTGGTCAACTGTTCCATTCACCATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31797</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>551681</contig_pos>
        <strand>+</strand>
        <context>TTCCGCAGAG[A/G]AGACCTCTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTGTTTATTTTTAGACGAATTTGAGTGAGAATTCAATTTTCCGCAGAG</left_flank>
        <right_flank>AGACCTCTAAAGAAATGGCTGTTCATCAGAATTCTTTTCATTTAGAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAAAGCTGCTCCTCGTTTACAGGTCCTTCTTTTCTTTTTGAAAGAGAAATAAAAAAAGAATTCAAATGAGTTCCGTTATATGAAGTCATGACGACTGGATCCCGGTGCCACTGGAAACCGTTCGGAGATTCGCCTGCCAACATCACTCGCTTCCTAGAGTGCATTTCGGAAGGCGGAAATGGGCCGTCTAATTGTTTTGGCATGCAAGTGGCATTTTCGCGGTGCCTATTTTTACTTTTTACTACTACTACTACGCCTATTTTGGGGTGGTGCTCTGGTGTGAGCATATGTTTACTCTCACCTTATAAGGCGCACTTTTCATTGAATTTTTCTATGGGAAACTATTGAAAAGAGAAGAAATACACATCTTCGCGAAGAACTTCTTTCAATTTTCTTTGGGGACCAGAAGACACCTTCCGAAAATAACATTTTGTTGCAAATGTTTCAAGTTGTTTATTTTTAGACGAATTTGAGTGAGAATTCAATTTTCCGCAGAGAAGACCTCTAAAGAAATGGCTGTTCATCAGAATTCTTTTCATTTAGAAAATTCGAATCGTGTCATTTCTGGATGATTTGTCTTTCCAAAAACTTGAATTTTCATTTTCGAGGTACCAGCCTTGGGTTTCCTGGTTACAAAATCATCGTAAGTAGTTAATAACATGTATTATCTATTGGCTATAAATAGGAAAATTGGTAGCTGTAATTGCCACGTTGCGTTGTTTTCTCAAGCATGAAACTTGAATTTAATAGTCGTCTATTCGGTGTCCACCAGATTGACACTTTGCCCAATTTTCAAAATATAAGTTTTTTCAAAACTTTTGAGACTCCGATATTCTCATAATCTTTTAACTTCGAAATAGTGGACTTTACATTTTGATATCTTGAGACTCTGAAATCATGAAATCTTGAAACTTTGAAAGTTCAGATTATCAAGATTTCGAGGTGTTTCAATTTACATTTTTCTATTGTCTAGAAAGTACTGTTTTTTTTTCAAATTT</canonical>
            <polymorphic>ATTAAAGCTGCTCCTCGTTTACAGGTCCTTCTTTTCTTTTTGAAAGAGAAATAAAAAAAGAATTCAAATGAGTTCCGTTATATGAAGTCATGACGACTGGATCCCGGTGCCACTGGAAACCGTTCGGAGATTCGCCTGCCAACATCACTCGCTTCCTAGAGTGCATTTCGGAAGGCGGAAATGGGCCGTCTAATTGTTTTGGCATGCAAGTGGCATTTTCGCGGTGCCTATTTTTACTTTTTACTACTACTACTACGCCTATTTTGGGGTGGTGCTCTGGTGTGAGCATATGTTTACTCTCACCTTATAAGGCGCACTTTTCATTGAATTTTTCTATGGGAAACTATTGAAAAGAGAAGAAATACACATCTTCGCGAAGAACTTCTTTCAATTTTCTTTGGGGACCAGAAGACACCTTCCGAAAATAACATTTTGTTGCAAATGTTTCAAGTTGTTTATTTTTAGACGAATTTGAGTGAGAATTCAATTTTCCGCAGAGRAGACCTCTAAAGAAATGGCTGTTCATCAGAATTCTTTTCATTTAGAAAATTCGAATCGTGTCATTTCTGGATGATTTGTCTTTCCAAAAACTTGAATTTTCATTTTCGAGGTACCAGCCTTGGGTTTCCTGGTTACAAAATCATCGTAAGTAGTTAATAACATGTATTATCTATTGGCTATAAATAGGAAAATTGGTAGCTGTAATTGCCACGTTGCGTTGTTTTCTCAAGCATGAAACTTGAATTTAATAGTCGTCTATTCGGTGTCCACCAGATTGACACTTTGCCCAATTTTCAAAATATAAGTTTTTTCAAAACTTTTGAGACTCCGATATTCTCATAATCTTTTAACTTCGAAATAGTGGACTTTACATTTTGATATCTTGAGACTCTGAAATCATGAAATCTTGAAACTTTGAAAGTTCAGATTATCAAGATTTCGAGGTGTTTCAATTTACATTTTTCTATTGTCTAGAAAGTACTGTTTTTTTTTCAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGGGAAACTATTGAAAAGAGA</pcr_primer_p1>
		<pcr_primer_p2>GAAAGACAAATCATCCAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATGGGAAACTATTGAAAAGAGAAGAAATACACATCTTCGCGAAGAACTTCTTTCAATTTTCTTTGGGGACCAGAAGACACCTTCCGAAAATAACATTTTGTTGCAAATGTTTCAAGTTGTTTATTTTTAGACGAATTTGAGTGAGAATTCAATTTTCCGCAGAGAAGACCTCTAAAGAAATGGCTGTTCATCAGAATTCTTTTCATTTAGAAAATTCGAATCGTGTCATTTCTGGATGATTTGTCTTTC</canonical_amplicon>
		<polymorphic_amplicon>TATGGGAAACTATTGAAAAGAGAAGAAATACACATCTTCGCGAAGAACTTCTTTCAATTTTCTTTGGGGACCAGAAGACACCTTCCGAAAATAACATTTTGTTGCAAATGTTTCAAGTTGTTTATTTTTAGACGAATTTGAGTGAGAATTCAATTTTCCGCAGAGRAGACCTCTAAAGAAATGGCTGTTCATCAGAATTCTTTTCATTTAGAAAATTCGAATCGTGTCATTTCTGGATGATTTGTCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31798</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>648262</contig_pos>
        <strand></strand>
        <context>gttatttttc[A/C]caaaaggaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATTTTGACTAATTTATTCGGAGTATCTATTAATCTGTCTGTTATTTTTC</left_flank>
        <right_flank>CAAAAGGAAAGTCGGAAAGTTAAAATTTTTACCCACGAATGCCACGAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAGCCGGTTCGAGATTATGAAGCAATCAAAATCTTTCAGATCTAAGAATTCAATTTTTCAGAAGTTTCTAAAAAATGCACTTTCCAACGGAAGCCCCTGAAAACAGGTTCCTGACACGGGGAAAAAGGAGGAGGAGGAGATTATGAAGAAACTGAAAACGGCTTGAAAAGGGGGATTATTGATAAATAAGGAGCAAGGGGATATCAGTTGAATCCGTGGGCGCGAAAAATGAAGGAGTTGTTTGTTTTTGTTTTGGAAATTAGCAAAGAGATTATAATGTAAAAAATATGGAACAGGACTTAATCTCATTAGCTGACAATTAGCTGAGACTAGTTGAAATATGAGTAAGAGTTCAAGAATCGGAAATTGAGTCACAAGGCAGATTCGATCTGGATTTTGCACGTAGATATGAGGATGGTGGCTCTTTTGAATTCTAAAAGTATTAAAGATTTTGACTAATTTATTCGGAGTATCTATTAATCTGTCTGTTATTTTTCACAAAAGGAAAGTCGGAAAGTTAAAATTTTTACCCACGAATGCCACGAAAATGGAGAAAATAAATACAGAGAATATAAATAATTTTAGGTTACGGTAGTTTTCTGTTTAATAAGTCCAACTTGTTTCGAACCAGAATAACCTTCCTTATTAATAAAACGCTAGAGGCGTCTGTCCGTCCTCGTGTCCGTCTGTGGACTTTTGAAAAAATTGAAAATACATATATATATATATTTACGTGACCCTGAAAATGAAAATTGAAAATACATATATATATATATATATATATATATATTTTTACGTGACCCTTTTATTTAGAAAAAGTGAGAAACGAAGCGACGAACATTTGAAAAAAAATAGATTGAATCGCGCCGAAGGCGCACCAGCTTGCTGGTATAGAATATGAATTAAAACTTCTAGGTGGAAACGGTTTCACTAAACTGCAGACAGATGTTGATAGTTCCTTCAAAAGTGCATGAACAGAATTTTGCTTCGAAGTGTTG</canonical>
            <polymorphic>TGAAGCCGGTTCGAGATTATGAAGCAATCAAAATCTTTCAGATCTAAGAATTCAATTTTTCAGAAGTTTCTAAAAAATGCACTTTCCAACGGAAGCCCCTGAAAACAGGTTCCTGACACGGGGAAAAAGGAGGAGGAGGAGATTATGAAGAAACTGAAAACGGCTTGAAAAGGGGGATTATTGATAAATAAGGAGCAAGGGGATATCAGTTGAATCCGTGGGCGCGAAAAATGAAGGAGTTGTTTGTTTTTGTTTTGGAAATTAGCAAAGAGATTATAATGTAAAAAATATGGAACAGGACTTAATCTCATTAGCTGACAATTAGCTGAGACTAGTTGAAATATGAGTAAGAGTTCAAGAATCGGAAATTGAGTCACAAGGCAGATTCGATCTGGATTTTGCACGTAGATATGAGGATGGTGGCTCTTTTGAATTCTAAAAGTATTAAAGATTTTGACTAATTTATTCGGAGTATCTATTAATCTGTCTGTTATTTTTCMCAAAAGGAAAGTCGGAAAGTTAAAATTTTTACCCACGAATGCCACGAAAATGGAGAAAATAAATACAGAGAATATAAATAATTTTAGGTTACGGTAGTTTTCTGTTTAATAAGTCCAACTTGTTTCGAACCAGAATAACCTTCCTTATTAATAAAACGCTAGAGGCGTCTGTCCGTCCTCGTGTCCGTCTGTGGACTTTTGAAAAAATTGAAAATACATATATATATATATTTACGTGACCCTGAAAATGAAAATTGAAAATACATATATATATATATATATATATATATATTTTTACGTGACCCTTTTATTTAGAAAAAGTGAGAAACGAAGCGACGAACATTTGAAAAAAAATAGATTGAATCGCGCCGAAGGCGCACCAGCTTGCTGGTATAGAATATGAATTAAAACTTCTAGGTGGAAACGGTTTCACTAAACTGCAGACAGATGTTGATAGTTCCTTCAAAAGTGCATGAACAGAATTTTGCTTCGAAGTGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>156 139 102 81 78 63 56 45 41 39 37 35 27 26 22 19 12 10 9 3</canonical_bands>
                <polymorphic_bands>156 139 113 102 81 63 56 45 41 39 37 27 26 22 19 12 10 9 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTTTGCACGTAGATATGA</pcr_primer_p1>
		<pcr_primer_p2>CGAAACAAGTTGGACTTATTAAA</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>GGATTTTGCACGTAGATATGAGGATGGTGGCTCTTTTGAATTCTAAAAGTATTAAAGATTTTGACTAATTTATTCGGAGTATCTATTAATCTGTCTGTTATTTTTCACAAAAGGAAAGTCGGAAAGTTAAAATTTTTACCCACGAATGCCACGAAAATGGAGAAAATAAATACAGAGAATATAAATAATTTTAGGTTACGGTAGTTTTCTGTTTAATAAGTCCAACTTGTTTCG</canonical_amplicon>
		<polymorphic_amplicon>GGATTTTGCACGTAGATATGAGGATGGTGGCTCTTTTGAATTCTAAAAGTATTAAAGATTTTGACTAATTTATTCGGAGTATCTATTAATCTGTCTGTTATTTTTCMCAAAAGGAAAGTCGGAAAGTTAAAATTTTTACCCACGAATGCCACGAAAATGGAGAAAATAAATACAGAGAATATAAATAATTTTAGGTTACGGTAGTTTTCTGTTTAATAAGTCCAACTTGTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31799</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>648490</contig_pos>
        <strand></strand>
        <context>atatatatat[A/T]tatttacgtg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCGTGTCCGTCTGTGGACTTTTGAAAAAATTGAAAATACATATATATAT</left_flank>
        <right_flank>TATTTACGTGACCCTGAAAATGAAAATTGAAAATACATATATATATATAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGAAGGAGTTGTTTGTTTTTGTTTTGGAAATTAGCAAAGAGATTATAATGTAAAAAATATGGAACAGGACTTAATCTCATTAGCTGACAATTAGCTGAGACTAGTTGAAATATGAGTAAGAGTTCAAGAATCGGAAATTGAGTCACAAGGCAGATTCGATCTGGATTTTGCACGTAGATATGAGGATGGTGGCTCTTTTGAATTCTAAAAGTATTAAAGATTTTGACTAATTTATTCGGAGTATCTATTAATCTGTCTGTTATTTTTCACAAAAGGAAAGTCGGAAAGTTAAAATTTTTACCCACGAATGCCACGAAAATGGAGAAAATAAATACAGAGAATATAAATAATTTTAGGTTACGGTAGTTTTCTGTTTAATAAGTCCAACTTGTTTCGAACCAGAATAACCTTCCTTATTAATAAAACGCTAGAGGCGTCTGTCCGTCCTCGTGTCCGTCTGTGGACTTTTGAAAAAATTGAAAATACATATATATATATATTTACGTGACCCTGAAAATGAAAATTGAAAATACATATATATATATATATATATATATATATTTTTACGTGACCCTTTTATTTAGAAAAAGTGAGAAACGAAGCGACGAACATTTGAAAAAAAATAGATTGAATCGCGCCGAAGGCGCACCAGCTTGCTGGTATAGAATATGAATTAAAACTTCTAGGTGGAAACGGTTTCACTAAACTGCAGACAGATGTTGATAGTTCCTTCAAAAGTGCATGAACAGAATTTTGCTTCGAAGTGTTGCGAAGACTAAAATATGTTCCAACATTTATACTGTACTATAGTCTCTCCGACTCTCATCGAATGGTCTTTTGTACGCATAGCTAACACAAAACCACCCAATCCTCCAGCTTCTTGTTTTTTCTCTTTTCTTTGATCACTTTTCTATTGCGCAATACGACAGCAAAAGAAAACGGACTGGTTATCAACCGAAAAAAAAATACGGAAAGGAAGGAATGAGCAAGAAGAGAA</canonical>
            <polymorphic>AAATGAAGGAGTTGTTTGTTTTTGTTTTGGAAATTAGCAAAGAGATTATAATGTAAAAAATATGGAACAGGACTTAATCTCATTAGCTGACAATTAGCTGAGACTAGTTGAAATATGAGTAAGAGTTCAAGAATCGGAAATTGAGTCACAAGGCAGATTCGATCTGGATTTTGCACGTAGATATGAGGATGGTGGCTCTTTTGAATTCTAAAAGTATTAAAGATTTTGACTAATTTATTCGGAGTATCTATTAATCTGTCTGTTATTTTTCACAAAAGGAAAGTCGGAAAGTTAAAATTTTTACCCACGAATGCCACGAAAATGGAGAAAATAAATACAGAGAATATAAATAATTTTAGGTTACGGTAGTTTTCTGTTTAATAAGTCCAACTTGTTTCGAACCAGAATAACCTTCCTTATTAATAAAACGCTAGAGGCGTCTGTCCGTCCTCGTGTCCGTCTGTGGACTTTTGAAAAAATTGAAAATACATATATATATWTATTTACGTGACCCTGAAAATGAAAATTGAAAATACATATATATATATATATATATATATATATTTTTACGTGACCCTTTTATTTAGAAAAAGTGAGAAACGAAGCGACGAACATTTGAAAAAAAATAGATTGAATCGCGCCGAAGGCGCACCAGCTTGCTGGTATAGAATATGAATTAAAACTTCTAGGTGGAAACGGTTTCACTAAACTGCAGACAGATGTTGATAGTTCCTTCAAAAGTGCATGAACAGAATTTTGCTTCGAAGTGTTGCGAAGACTAAAATATGTTCCAACATTTATACTGTACTATAGTCTCTCCGACTCTCATCGAATGGTCTTTTGTACGCATAGCTAACACAAAACCACCCAATCCTCCAGCTTCTTGTTTTTTCTCTTTTCTTTGATCACTTTTCTATTGCGCAATACGACAGCAAAAGAAAACGGACTGGTTATCAACCGAAAAAAAAATACGGAAAGGAAGGAATGAGCAAGAAGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTAATAAGTCCAACTTGTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTCCACCTAGAAGTTTTAATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>TGTTTAATAAGTCCAACTTGTTTCGAACCAGAATAACCTTCCTTATTAATAAAACGCTAGAGGCGTCTGTCCGTCCTCGTGTCCGTCTGTGGACTTTTGAAAAAATTGAAAATACATATATATATATATTTACGTGACCCTGAAAATGAAAATTGAAAATACATATATATATATATATATATATATATATTTTTACGTGACCCTTTTATTTAGAAAAAGTGAGAAACGAAGCGACGAACATTTGAAAAAAAATAGATTGAATCGCGCCGAAGGCGCACCAGCTTGCTGGTATAGAATATGAATTAAAACTTCTAGGTGGAA</canonical_amplicon>
		<polymorphic_amplicon>TGTTTAATAAGTCCAACTTGTTTCGAACCAGAATAACCTTCCTTATTAATAAAACGCTAGAGGCGTCTGTCCGTCCTCGTGTCCGTCTGTGGACTTTTGAAAAAATTGAAAATACATATATATATWTATTTACGTGACCCTGAAAATGAAAATTGAAAATACATATATATATATATATATATATATATATTTTTACGTGACCCTTTTATTTAGAAAAAGTGAGAAACGAAGCGACGAACATTTGAAAAAAAATAGATTGAATCGCGCCGAAGGCGCACCAGCTTGCTGGTATAGAATATGAATTAAAACTTCTAGGTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31800</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>649844</contig_pos>
        <strand></strand>
        <context>atgataaaaa[T/A]ttttttggac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATATAAAAAATCTGTGAACTGATAAAACAATGACGATAGTATGATAAAAA</left_flank>
        <right_flank>TTTTTTGGACCGATATCTTTCAAAAGAACCGAGATAATTGAGCTCAAAGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAGTGAGACACGCAGTACGTTCCGCTCGCCCTTTTGAATTTTCAGCAACCGGAAGGCCCGGCAGAAGTCATAAGAAGCACTAATTCTGAAACTGAATCTTCTTGACCTTTTCAATTAAAAAACTGGAGGAGAGAAAGAAGAACTGAAATTCAACACCTAGAGAGGAAAAGAGAAAAACAGCCAATCTTTGACTCATGATTCATGTTTTGTGGTAACATTCAGCTTGCGATTAAAAATTCTATGTATGAGCCTGATTACTTTTGAGAATATAAAGAGCTCTAAGCTGTTGGCGGCTGATGAAATTTGAATTTGATGAATTTTGGAACATCACAGAACTATCCTAGTTTTGATGAGTTCTAGAGATGCCTCTTTTTCTTGTTCCCACCTGTTACCGTACTTACTCTAATATGTCCACTTTGAGCTCAATTATCTCGATTTCTATGAGAGATATAAAAAATCTGTGAACTGATAAAACAATGACGATAGTATGATAAAAATTTTTTTGGACCGATATCTTTCAAAAGAACCGAGATAATTGAGCTCAAAGTACATATCTAAGGTGGGCTTCTATTCGAGCAAACACGGTATATGAGAATCAAACTCCATTCTTACCCATCATAAAAATTTATAGCCTCTATATTAGTTTGTGATATTTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGTGAAAGATGTCGTTCTATTAGAGGTTTTACGGTATTACCGGCAACTTGATATGCTCACACTATCAATTTTTAGGGATTAATTTTGTTGTGTAGCCACTATAAAAACACTAGAAACGACATTTTCTCTGGAATATAAATCACTGCAAATCACAAAACGAATGGTGGTTTTTCTGATCCTCCCTTCTCCAAATAATCATTCCAGGAAGTGTTTCTCTTCTGCTATCTCTATCCTTATCTTATTCTTTTTTTCTCTATCAGTTCAGAAAGGAGTCAGACA</canonical>
            <polymorphic>GAGAGTGAGACACGCAGTACGTTCCGCTCGCCCTTTTGAATTTTCAGCAACCGGAAGGCCCGGCAGAAGTCATAAGAAGCACTAATTCTGAAACTGAATCTTCTTGACCTTTTCAATTAAAAAACTGGAGGAGAGAAAGAAGAACTGAAATTCAACACCTAGAGAGGAAAAGAGAAAAACAGCCAATCTTTGACTCATGATTCATGTTTTGTGGTAACATTCAGCTTGCGATTAAAAATTCTATGTATGAGCCTGATTACTTTTGAGAATATAAAGAGCTCTAAGCTGTTGGCGGCTGATGAAATTTGAATTTGATGAATTTTGGAACATCACAGAACTATCCTAGTTTTGATGAGTTCTAGAGATGCCTCTTTTTCTTGTTCCCACCTGTTACCGTACTTACTCTAATATGTCCACTTTGAGCTCAATTATCTCGATTTCTATGAGAGATATAAAAAATCTGTGAACTGATAAAACAATGACGATAGTATGATAAAAAWTTTTTTGGACCGATATCTTTCAAAAGAACCGAGATAATTGAGCTCAAAGTACATATCTAAGGTGGGCTTCTATTCGAGCAAACACGGTATATGAGAATCAAACTCCATTCTTACCCATCATAAAAATTTATAGCCTCTATATTAGTTTGTGATATTTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGTGAAAGATGTCGTTCTATTAGAGGTTTTACGGTATTACCGGCAACTTGATATGCTCACACTATCAATTTTTAGGGATTAATTTTGTTGTGTAGCCACTATAAAAACACTAGAAACGACATTTTCTCTGGAATATAAATCACTGCAAATCACAAAACGAATGGTGGTTTTTCTGATCCTCCCTTCTCCAAATAATCATTCCAGGAAGTGTTTCTCTTCTGCTATCTCTATCCTTATCTTATTCTTTTTTTCTCTATCAGTTCAGAAAGGAGTCAGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>376 180 127 110 88 66 38 9 6</canonical_bands>
                <polymorphic_bands>376 307 110 88 66 38 9 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>199 163 109 89 88 71 66 45 38 38 34 31 14 9 6</canonical_bands>
                <polymorphic_bands>199 163 109 109 89 88 66 45 38 34 31 14 9 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTGTTCCCACCTGTTA</pcr_primer_p1>
		<pcr_primer_p2>TTATGATGGGTAAGAATGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTGTTCCCACCTGTTACCGTACTTACTCTAATATGTCCACTTTGAGCTCAATTATCTCGATTTCTATGAGAGATATAAAAAATCTGTGAACTGATAAAACAATGACGATAGTATGATAAAAATTTTTTTGGACCGATATCTTTCAAAAGAACCGAGATAATTGAGCTCAAAGTACATATCTAAGGTGGGCTTCTATTCGAGCAAACACGGTATATGAGAATCAAACTCCATTCTTACCCATCATAA</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTGTTCCCACCTGTTACCGTACTTACTCTAATATGTCCACTTTGAGCTCAATTATCTCGATTTCTATGAGAGATATAAAAAATCTGTGAACTGATAAAACAATGACGATAGTATGATAAAAAWTTTTTTGGACCGATATCTTTCAAAAGAACCGAGATAATTGAGCTCAAAGTACATATCTAAGGTGGGCTTCTATTCGAGCAAACACGGTATATGAGAATCAAACTCCATTCTTACCCATCATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31801</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>650700</contig_pos>
        <strand>+</strand>
        <context>AGGCACGGAT[A/T]AAAAATAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGGCAAAACGGAGATATAGGAAGAAAAGAGAGGTACTGTAGGCACGGAT</left_flank>
        <right_flank>AAAAATAAAAAAAATCAACAAACTGAAATTTTGTATTTTTTTTTGGATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATCACTGCAAATCACAAAACGAATGGTGGTTTTTCTGATCCTCCCTTCTCCAAATAATCATTCCAGGAAGTGTTTCTCTTCTGCTATCTCTATCCTTATCTTATTCTTTTTTTCTCTATCAGTTCAGAAAGGAGTCAGACAACCATCAGAGGACCGGAGAAGAGAGAAAGAGAAATGACAGTTCCGGCTTCATCTCACGCCATTCGTCTTTTTCTCTCTTTTCTCTTGAATTCCTATTATCTCTTTTGGTTCTTGATTTTGATTATTGAGAATGCTCTTTTCCGAAAAGGGGGATACACCCGGAGGGAGAGAATTCGGTGATAATTTTTTGATAGAAGAAGAGGTCATGCGGTTTTTGAGGGAAAAAATAGTGAAAATGACGAGAAGAATCTTAAAAACAGTTGGACAGTTCTGCAGGCAAAAAAAAAGAAACATTGATAGAAAAATCGGCAAAACGGAGATATAGGAAGAAAAGAGAGGTACTGTAGGCACGGATAAAAAATAAAAAAAATCAACAAACTGAAATTTTGTATTTTTTTTTGGATATCAGATTTTTCGATACTTTCCGTCTCAAAAACAATCTAGCGTTCCGTTACTTGTCTGTCTGTCGGTGTGGCTGTTTGTCCAGCTCAAAATGTAATTCAAAATTACAGGGTGATGCCTAATTACGCGGACTAAAGTTTGTAAAATTGGAGTGAAGCGTTGTACTGGGCTCACATTTGGAGTGCGAAAAATCAAATAATTCATCAGTAAACCGGCTAATCGCTTGTCAAAGTTGCTTCATCTCATGGAAGCCACGACGACGTGCAAGAAACATTCATCTTTGGACAATCACAACAATAACTAGACTCGAGGAATCGCTTTGAAAATTTCAGTAGCTTTGAAACAAGCATAAAATTATATTTCCACCAATTTTCGCGCGTTCAAGATACTTATGTTAATTGTGCTCCACCCTGTATATGTTGTCGATTCATACAAAAGTTGAAAATACTGTCTA</canonical>
            <polymorphic>TAAATCACTGCAAATCACAAAACGAATGGTGGTTTTTCTGATCCTCCCTTCTCCAAATAATCATTCCAGGAAGTGTTTCTCTTCTGCTATCTCTATCCTTATCTTATTCTTTTTTTCTCTATCAGTTCAGAAAGGAGTCAGACAACCATCAGAGGACCGGAGAAGAGAGAAAGAGAAATGACAGTTCCGGCTTCATCTCACGCCATTCGTCTTTTTCTCTCTTTTCTCTTGAATTCCTATTATCTCTTTTGGTTCTTGATTTTGATTATTGAGAATGCTCTTTTCCGAAAAGGGGGATACACCCGGAGGGAGAGAATTCGGTGATAATTTTTTGATAGAAGAAGAGGTCATGCGGTTTTTGAGGGAAAAAATAGTGAAAATGACGAGAAGAATCTTAAAAACAGTTGGACAGTTCTGCAGGCAAAAAAAAAGAAACATTGATAGAAAAATCGGCAAAACGGAGATATAGGAAGAAAAGAGAGGTACTGTAGGCACGGATWAAAAATAAAAAAAATCAACAAACTGAAATTTTGTATTTTTTTTTGGATATCAGATTTTTCGATACTTTCCGTCTCAAAAACAATCTAGCGTTCCGTTACTTGTCTGTCTGTCGGTGTGGCTGTTTGTCCAGCTCAAAATGTAATTCAAAATTACAGGGTGATGCCTAATTACGCGGACTAAAGTTTGTAAAATTGGAGTGAAGCGTTGTACTGGGCTCACATTTGGAGTGCGAAAAATCAAATAATTCATCAGTAAACCGGCTAATCGCTTGTCAAAGTTGCTTCATCTCATGGAAGCCACGACGACGTGCAAGAAACATTCATCTTTGGACAATCACAACAATAACTAGACTCGAGGAATCGCTTTGAAAATTTCAGTAGCTTTGAAACAAGCATAAAATTATATTTCCACCAATTTTCGCGCGTTCAAGATACTTATGTTAATTGTGCTCCACCCTGTATATGTTGTCGATTCATACAAAAGTTGAAAATACTGTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATAGTGAAAATGACGAGAAGA</pcr_primer_p1>
		<pcr_primer_p2>ACACCGACAGACAGACAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATAGTGAAAATGACGAGAAGAATCTTAAAAACAGTTGGACAGTTCTGCAGGCAAAAAAAAAGAAACATTGATAGAAAAATCGGCAAAACGGAGATATAGGAAGAAAAGAGAGGTACTGTAGGCACGGATAAAAAATAAAAAAAATCAACAAACTGAAATTTTGTATTTTTTTTTGGATATCAGATTTTTCGATACTTTCCGTCTCAAAAACAATCTAGCGTTCCGTTACTTGTCTGTCTGTCGGTGT</canonical_amplicon>
		<polymorphic_amplicon>AAATAGTGAAAATGACGAGAAGAATCTTAAAAACAGTTGGACAGTTCTGCAGGCAAAAAAAAAGAAACATTGATAGAAAAATCGGCAAAACGGAGATATAGGAAGAAAAGAGAGGTACTGTAGGCACGGATWAAAAATAAAAAAAATCAACAAACTGAAATTTTGTATTTTTTTTTGGATATCAGATTTTTCGATACTTTCCGTCTCAAAAACAATCTAGCGTTCCGTTACTTGTCTGTCTGTCGGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31802</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>726810</contig_pos>
        <strand></strand>
        <context>CAATtgaaaa[G/A]ctaggaattt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAAAAGAGGAACTACAGTAAGATACATATAGGCTGGTCTCAATTGAAAA</left_flank>
        <right_flank>CTAGGAATTTTCAGAGAATTCTGAGAATACAAATTTTTCAATCTAGATCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGACGAGAAAAGAGAAGGGAAAAGATAGAGACCAAAGTGTACCCGGTGCACGGAGAACCACCGATTGTAGAGGTCAGAAATGATCCAGAATAGAAAAAAGAACACGACAGGCAATAGGGGGCGGAGAATCGTGTTGATGACAGGTGAAAGTTGTTTTCCTAGTTAGTGATACGGTATACCAATGATTCTTAGCTGTGACTGGCACAGAGACACTCGAAAAGTAATTCTAGCTGGATGAGAGGGAAGGTTCCAGATATCGCGTTCTCTGTTTATTTGAGTCTCTCGTCAAAATGCAATGTTTTCAAGATATCACATTTCATCGTTCCAACCTTTTGCCCATATTCCGACAGAGTTAGAATTTCATCCGGTGAGAAAATCGAAGAAGAGAAAATTTTTGGCAAAGGGGAAAAAAGGTACTGGGCACATTGAATGCTTTGGGATGCCATGAAAAAAAGAGGAACTACAGTAAGATACATATAGGCTGGTCTCAATTGAAAAGCTAGGAATTTTCAGAGAATTCTGAGAATACAAATTTTTCAATCTAGATCTGTTTTATAACCTCCGAAAATTTCAAACTGATCGGACACAGGGCAGTCGAGCTCTCGACTCGTGCACATAGTCAAAATCAACTGAACAACACATTTTTGTATCTTATCGGCTGGTACTGTATGTAGCGAGCCCTAGCGCAGTTCGTAATTTTCCGATCGAACGCAAATTAATAAGATCCGATCGAACAAACTATGCTGTTACAGAAAATCGGAACTATGAAGCCGCCGGTGGCAGCGACCGAAGAACCCACAACGACAACTGCCGTAGTTCAAAAATTTCTGTTCTCAGTATTCTTTTCTCAATTCTCGCTCCAATTCTTTCACTATCAAAAATTTTCAATTAGCGAATTTTCTGAATGAAAACAGCAGAAAACCCAAACGTTGTCGTTTCCGATGTTCGTTTTTTTTTGAATTCTGAACTTCACAGCTTCTCAAGACGTTATGCATTTTT</canonical>
            <polymorphic>CTGACGAGAAAAGAGAAGGGAAAAGATAGAGACCAAAGTGTACCCGGTGCACGGAGAACCACCGATTGTAGAGGTCAGAAATGATCCAGAATAGAAAAAAGAACACGACAGGCAATAGGGGGCGGAGAATCGTGTTGATGACAGGTGAAAGTTGTTTTCCTAGTTAGTGATACGGTATACCAATGATTCTTAGCTGTGACTGGCACAGAGACACTCGAAAAGTAATTCTAGCTGGATGAGAGGGAAGGTTCCAGATATCGCGTTCTCTGTTTATTTGAGTCTCTCGTCAAAATGCAATGTTTTCAAGATATCACATTTCATCGTTCCAACCTTTTGCCCATATTCCGACAGAGTTAGAATTTCATCCGGTGAGAAAATCGAAGAAGAGAAAATTTTTGGCAAAGGGGAAAAAAGGTACTGGGCACATTGAATGCTTTGGGATGCCATGAAAAAAAGAGGAACTACAGTAAGATACATATAGGCTGGTCTCAATTGAAAARCTAGGAATTTTCAGAGAATTCTGAGAATACAAATTTTTCAATCTAGATCTGTTTTATAACCTCCGAAAATTTCAAACTGATCGGACACAGGGCAGTCGAGCTCTCGACTCGTGCACATAGTCAAAATCAACTGAACAACACATTTTTGTATCTTATCGGCTGGTACTGTATGTAGCGAGCCCTAGCGCAGTTCGTAATTTTCCGATCGAACGCAAATTAATAAGATCCGATCGAACAAACTATGCTGTTACAGAAAATCGGAACTATGAAGCCGCCGGTGGCAGCGACCGAAGAACCCACAACGACAACTGCCGTAGTTCAAAAATTTCTGTTCTCAGTATTCTTTTCTCAATTCTCGCTCCAATTCTTTCACTATCAAAAATTTTCAATTAGCGAATTTTCTGAATGAAAACAGCAGAAAACCCAAACGTTGTCGTTTCCGATGTTCGTTTTTTTTTGAATTCTGAACTTCACAGCTTCTCAAGACGTTATGCATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>376 269 193 100 38 24</canonical_bands>
                <polymorphic_bands>376 369 193 38 24</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>251 205 193 100 92 59 38 24 20 18</canonical_bands>
                <polymorphic_bands>251 205 193 118 92 59 38 24 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAAAATCGAAGAAGAGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GATCGGAAAATTACGAACTG</pcr_primer_p2>
		<pcr_amplicon_size>337</pcr_amplicon_size>
		<canonical_amplicon>GAGAAAATCGAAGAAGAGAAAATTTTTGGCAAAGGGGAAAAAAGGTACTGGGCACATTGAATGCTTTGGGATGCCATGAAAAAAAGAGGAACTACAGTAAGATACATATAGGCTGGTCTCAATTGAAAAGCTAGGAATTTTCAGAGAATTCTGAGAATACAAATTTTTCAATCTAGATCTGTTTTATAACCTCCGAAAATTTCAAACTGATCGGACACAGGGCAGTCGAGCTCTCGACTCGTGCACATAGTCAAAATCAACTGAACAACACATTTTTGTATCTTATCGGCTGGTACTGTATGTAGCGAGCCCTAGCGCAGTTCGTAATTTTCCGATC</canonical_amplicon>
		<polymorphic_amplicon>GAGAAAATCGAAGAAGAGAAAATTTTTGGCAAAGGGGAAAAAAGGTACTGGGCACATTGAATGCTTTGGGATGCCATGAAAAAAAGAGGAACTACAGTAAGATACATATAGGCTGGTCTCAATTGAAAARCTAGGAATTTTCAGAGAATTCTGAGAATACAAATTTTTCAATCTAGATCTGTTTTATAACCTCCGAAAATTTCAAACTGATCGGACACAGGGCAGTCGAGCTCTCGACTCGTGCACATAGTCAAAATCAACTGAACAACACATTTTTGTATCTTATCGGCTGGTACTGTATGTAGCGAGCCCTAGCGCAGTTCGTAATTTTCCGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31803</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>729141</contig_pos>
        <strand>+</strand>
        <context>CCGGCGGCCG[C/T]ACTTGAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAGTGCTGGAAATCTAGTCCATGCGACTTTGGCCAGGGGCCGGCGGCCG</left_flank>
        <right_flank>ACTTGAATTTTAAAACAATTTACCGCTCGATTTTCTTCAANNNNNNNNNN</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAGGAAGAGTAATTGAATGTATTTATATGGGTGGCACTATCTGGAACACTAATATTTGATTTTCTCTCCCATTTTTGGGCCTTTTTTTGGGTTGTGTTTGTAGAGTTGAGACAAAGTGTAAACAAATGGCAAGAAAATAAGGATGGAAACGGCAAGGAGTTTGTGGTTGGTAGGAAGGAAAAAATGGAAGAAGAAGAACGAAGATAGAACAAAAAAAGATAATCATCGAGGAAAAGGTTATGAAATTTTTGGAAATGGAGGATTACTGTAGAAGAGGGAACTCTGGGGATCCTAGTTTATGGCGCATTTTGCAGTTGGAAAATCAATCAAAAGAAAATAATTGAAGCTTATGAATATTGTAGATCAAATTCTAAACCATCTTGTAATAGGGAAATATTTTACAGGAAGCCTGCGCTTCACCGCACTGGTAAAATGGCACAGTTTTTTAGTGCTGGAAATCTAGTCCATGCGACTTTGGCCAGGGGCCGGCGGCCGTACTTGAATTTTAAAACAATTTACCGCTCGATTTTCTTCAANNNNNNNNNNTGCATTATCAGCTGTGAAAAAATTTTCTCTCGAAGATTTTTCAAGAGATTTTTCTCGAGAAAAAATTTTGAGAGGAAATTTCCACGGCCAATAATTCAATTAAATTCGTTTTTTGGATGCAAATAAATTAATTTATTTGCGTATCTGCATAGTATTTTTGTGTATTTATTTGCCATTTTTATTGCAAATTTATTACGTGCATAACCCCATTAAGTTGCATGAAATTGATTTCAAGTGTAATTTGAATTTGTGGTTGGCTCAAAAGAACCGTAAATCTGAACGTCTTACAACTTATTAAGATGTGAGAAAATTAAAATTCTGAAGCAATGGAAAAGGACATTGCTGATCCCAAACTGTCAGTTTAGACCTCGAGTTGTTTTGAATATCTTCTGAATTAATCCGACTGTTTTTAATAAGACTTTCCTCATATATATTTATAAGTACACGAAT</canonical>
            <polymorphic>AAAAAAGGAAGAGTAATTGAATGTATTTATATGGGTGGCACTATCTGGAACACTAATATTTGATTTTCTCTCCCATTTTTGGGCCTTTTTTTGGGTTGTGTTTGTAGAGTTGAGACAAAGTGTAAACAAATGGCAAGAAAATAAGGATGGAAACGGCAAGGAGTTTGTGGTTGGTAGGAAGGAAAAAATGGAAGAAGAAGAACGAAGATAGAACAAAAAAAGATAATCATCGAGGAAAAGGTTATGAAATTTTTGGAAATGGAGGATTACTGTAGAAGAGGGAACTCTGGGGATCCTAGTTTATGGCGCATTTTGCAGTTGGAAAATCAATCAAAAGAAAATAATTGAAGCTTATGAATATTGTAGATCAAATTCTAAACCATCTTGTAATAGGGAAATATTTTACAGGAAGCCTGCGCTTCACCGCACTGGTAAAATGGCACAGTTTTTTAGTGCTGGAAATCTAGTCCATGCGACTTTGGCCAGGGGCCGGCGGCCGYACTTGAATTTTAAAACAATTTACCGCTCGATTTTCTTCAANNNNNNNNNNTGCATTATCAGCTGTGAAAAAATTTTCTCTCGAAGATTTTTCAAGAGATTTTTCTCGAGAAAAAATTTTGAGAGGAAATTTCCACGGCCAATAATTCAATTAAATTCGTTTTTTGGATGCAAATAAATTAATTTATTTGCGTATCTGCATAGTATTTTTGTGTATTTATTTGCCATTTTTATTGCAAATTTATTACGTGCATAACCCCATTAAGTTGCATGAAATTGATTTCAAGTGTAATTTGAATTTGTGGTTGGCTCAAAAGAACCGTAAATCTGAACGTCTTACAACTTATTAAGATGTGAGAAAATTAAAATTCTGAAGCAATGGAAAAGGACATTGCTGATCCCAAACTGTCAGTTTAGACCTCGAGTTGTTTTGAATATCTTCTGAATTAATCCGACTGTTTTTAATAAGACTTTCCTCATATATATTTATAAGTACACGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 492 8</canonical_bands>
                <polymorphic_bands>992 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAGTGCTGGAAATCTAGTCC</pcr_primer_p1>
		<pcr_primer_p2>CAACCACAAATTCAAATTACACT</pcr_primer_p2>
		<pcr_amplicon_size>358</pcr_amplicon_size>
		<canonical_amplicon>TTTAGTGCTGGAAATCTAGTCCATGCGACTTTGGCCAGGGGCCGGCGGCCGTACTTGAATTTTAAAACAATTTACCGCTCGATTTTCTTCAANNNNNNNNNNTGCATTATCAGCTGTGAAAAAATTTTCTCTCGAAGATTTTTCAAGAGATTTTTCTCGAGAAAAAATTTTGAGAGGAAATTTCCACGGCCAATAATTCAATTAAATTCGTTTTTTGGATGCAAATAAATTAATTTATTTGCGTATCTGCATAGTATTTTTGTGTATTTATTTGCCATTTTTATTGCAAATTTATTACGTGCATAACCCCATTAAGTTGCATGAAATTGATTTCAAGTGTAATTTGAATTTGTGGTTG</canonical_amplicon>
		<polymorphic_amplicon>TTTAGTGCTGGAAATCTAGTCCATGCGACTTTGGCCAGGGGCCGGCGGCCGYACTTGAATTTTAAAACAATTTACCGCTCGATTTTCTTCAANNNNNNNNNNTGCATTATCAGCTGTGAAAAAATTTTCTCTCGAAGATTTTTCAAGAGATTTTTCTCGAGAAAAAATTTTGAGAGGAAATTTCCACGGCCAATAATTCAATTAAATTCGTTTTTTGGATGCAAATAAATTAATTTATTTGCGTATCTGCATAGTATTTTTGTGTATTTATTTGCCATTTTTATTGCAAATTTATTACGTGCATAACCCCATTAAGTTGCATGAAATTGATTTCAAGTGTAATTTGAATTTGTGGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31804</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>751293</contig_pos>
        <strand></strand>
        <context>GCAGGCCATT[T/C]ACAGACCAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCGCGGAAAGTCGCCATGGGTACATCGGAACATGCCTGCCGCAGGCCATT</left_flank>
        <right_flank>ACAGACCAATCGCGAACGCGCCACCGCAAACGACCAATATTCGCCCTATC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTTCAAAATACGCATTCGATGAAACTCCTTCCCGACGACAGCACTCGAAAACTATTGAGACTCCGATTTTGGATAGTGTATGATACCAATTTAAACATTTTATACGTAGGCACCAAAACAAAAATTTCAAAATAGATTTTTCCCAGTTTTTATTGTTGGATTGTCTTCTCCTACTTTATAGAAGTCCATTCCCAAATTTTCAGCGAAAAATCTTCATTCAATCCCGAGTTACAGACCCTTTTGTACCAGACCTCAATGTACTGACTTTCTCCTCATTGTTTTGTGGTGCGCAGAAAAGTGGGCGGGGTTTAGAAGCTTGCAATCCTGCGGCGCGGAAAATTCGTGAAGGAAGTTAAAGAAAAAGCTATTCGATGCGAGTGAGACCCGAACCTCCGCCTGCGTAACACAGGTGATTCGCTCAGCGTCTATAATAAATGAAATATTGTTCGCGGAAAGTCGCCATGGGTACATCGGAACATGCCTGCCGCAGGCCATTTACAGACCAATCGCGAACGCGCCACCGCAAACGACCAATATTCGCCCTATCGCGAGCAAATCTCCTACAATTGGCTTGTCGCGAGAGCAATAATTGGCATATATTGTTTCGAATCTGGAAGCTAGCAGCTGCTAAAAATTGTTTATTACACAGAAAAAACAATGAAAAGCGAAAAAACAATTAATTAAAAGTTATATTATTCTCTTCCGCTGTTGTCGAACTGGCTGAAACGGCATCGGAGCTTCTCGTTTTGTCCATTTTTGCCTCAGTCGATGACGATGAGCAGAAGATGATGTTGATTGTTGTTTCGAAGTAACTGAAATGAATTATCTAGATTTTAAGCTCCCAATTCTTTTTGTACTATACCTCTGACACAAGTTATCGACTGGAAATTTTTTCGAAATCCGCGAACTTAACACTTCCGTCTGAAATCAACTTTTTTCTCTGATATTCGTTTTCAAATTTACCCACTGTTCCAGAACTTTTTCCTTTCATGGTTAT</canonical>
            <polymorphic>GATTTTCAAAATACGCATTCGATGAAACTCCTTCCCGACGACAGCACTCGAAAACTATTGAGACTCCGATTTTGGATAGTGTATGATACCAATTTAAACATTTTATACGTAGGCACCAAAACAAAAATTTCAAAATAGATTTTTCCCAGTTTTTATTGTTGGATTGTCTTCTCCTACTTTATAGAAGTCCATTCCCAAATTTTCAGCGAAAAATCTTCATTCAATCCCGAGTTACAGACCCTTTTGTACCAGACCTCAATGTACTGACTTTCTCCTCATTGTTTTGTGGTGCGCAGAAAAGTGGGCGGGGTTTAGAAGCTTGCAATCCTGCGGCGCGGAAAATTCGTGAAGGAAGTTAAAGAAAAAGCTATTCGATGCGAGTGAGACCCGAACCTCCGCCTGCGTAACACAGGTGATTCGCTCAGCGTCTATAATAAATGAAATATTGTTCGCGGAAAGTCGCCATGGGTACATCGGAACATGCCTGCCGCAGGCCATTYACAGACCAATCGCGAACGCGCCACCGCAAACGACCAATATTCGCCCTATCGCGAGCAAATCTCCTACAATTGGCTTGTCGCGAGAGCAATAATTGGCATATATTGTTTCGAATCTGGAAGCTAGCAGCTGCTAAAAATTGTTTATTACACAGAAAAAACAATGAAAAGCGAAAAAACAATTAATTAAAAGTTATATTATTCTCTTCCGCTGTTGTCGAACTGGCTGAAACGGCATCGGAGCTTCTCGTTTTGTCCATTTTTGCCTCAGTCGATGACGATGAGCAGAAGATGATGTTGATTGTTGTTTCGAAGTAACTGAAATGAATTATCTAGATTTTAAGCTCCCAATTCTTTTTGTACTATACCTCTGACACAAGTTATCGACTGGAAATTTTTTCGAAATCCGCGAACTTAACACTTCCGTCTGAAATCAACTTTTTTCTCTGATATTCGTTTTCAAATTTACCCACTGTTCCAGAACTTTTTCCTTTCATGGTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTCGATGCGAGTGAGAC</pcr_primer_p1>
		<pcr_primer_p2>TCGAAACAATATATGCCAATTA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CTATTCGATGCGAGTGAGACCCGAACCTCCGCCTGCGTAACACAGGTGATTCGCTCAGCGTCTATAATAAATGAAATATTGTTCGCGGAAAGTCGCCATGGGTACATCGGAACATGCCTGCCGCAGGCCATTTACAGACCAATCGCGAACGCGCCACCGCAAACGACCAATATTCGCCCTATCGCGAGCAAATCTCCTACAATTGGCTTGTCGCGAGAGCAATAATTGGCATATATTGTTTCGA</canonical_amplicon>
		<polymorphic_amplicon>CTATTCGATGCGAGTGAGACCCGAACCTCCGCCTGCGTAACACAGGTGATTCGCTCAGCGTCTATAATAAATGAAATATTGTTCGCGGAAAGTCGCCATGGGTACATCGGAACATGCCTGCCGCAGGCCATTYACAGACCAATCGCGAACGCGCCACCGCAAACGACCAATATTCGCCCTATCGCGAGCAAATCTCCTACAATTGGCTTGTCGCGAGAGCAATAATTGGCATATATTGTTTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31805</snp_id>
        <super_contig>c006601257.Contig1</super_contig>
        <contig_pos>753478</contig_pos>
        <strand></strand>
        <context>caatccttct[A/G]aaaattgaca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGAATTTTCGGATGCGTATGAAAACTATTTAAAGGTAATCAATCCTTCT</left_flank>
        <right_flank>AAAATTGACACAGGTGTACACAAGACTTAGTTTTACCATAATATGCAAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGCGCGCATTCGGAACACTCGATTCAGCCTCTCCCGCATCGCACACATATGAGACTCATCGCAGCTCATTGTTCGCGATATGTGTCAAACGGACTTCTAGAGGATCGCATATGGATCGGGTCCTTTATGCGCATCATCGCCCAGGACCTGTGCTATCCAGTCGGCCACGGCTGCACCCGCGGTGGTAGCCTTAAAGGGGAAATAAGAATGTGCGACTCTTCGTTGCCTGCTGCCTCCTTCCGGTGTTGCCTCCTTCTTGTTTTTTTAATAGATTGCACTACGAAAGATGAGGAAACAGGCGTCTAACATTTTTCGGCCACATACGAATTTTCAAGTTAGGATTGTATTTAGTGGCAAATTTTGCGTAGAATCTTATGGTAAAAAGAAATTCGGTGGCACTAATCTGTGTCATCCTCAAAACTTCCAAAAACCGGAAATTTTGCAAGTTTAGAATTTTCGGATGCGTATGAAAACTATTTAAAGGTAATCAATCCTTCTAAAAATTGACACAGGTGTACACAAGACTTAGTTTTACCATAATATGCAAAAAAATTGGGGTCGTCGCTGAAATTTTTTATTTATTTTGGCTGGAACTTTGGCTGAAAATCGCGTTTTACGGCCACATACGAATTTTGATTTTTCTTCAAAATCCAATCTCCCATTTCATAAACTACCAGAATTCGTCAAAAAATCTGGTGGCACGAACTTCCATCTAACACTTTTAGCCCATTTTGTCAGTCCGACTCCTATTTTTCGAAGTTTTCGAATCAAAATAATGAAAATATTGAAAAACTGATGGTTCCATTCGATTTTTCGCAGTCGATTACGTAGGGACAAGTTTTAACCCAAAAAATAATGCGTTTCTAACGCCCGGTACAAGACTTCAAAAATGAACTTCTGAAAAGGGGAGAAAAATTTGGTCGCCCCGCCCCTTTTTATTGCGGCGCCTATTTATACGAAATTAATACACTTTTCAGTTCCCAGCAAAATACGAACACG</canonical>
            <polymorphic>ACGCGCGCATTCGGAACACTCGATTCAGCCTCTCCCGCATCGCACACATATGAGACTCATCGCAGCTCATTGTTCGCGATATGTGTCAAACGGACTTCTAGAGGATCGCATATGGATCGGGTCCTTTATGCGCATCATCGCCCAGGACCTGTGCTATCCAGTCGGCCACGGCTGCACCCGCGGTGGTAGCCTTAAAGGGGAAATAAGAATGTGCGACTCTTCGTTGCCTGCTGCCTCCTTCCGGTGTTGCCTCCTTCTTGTTTTTTTAATAGATTGCACTACGAAAGATGAGGAAACAGGCGTCTAACATTTTTCGGCCACATACGAATTTTCAAGTTAGGATTGTATTTAGTGGCAAATTTTGCGTAGAATCTTATGGTAAAAAGAAATTCGGTGGCACTAATCTGTGTCATCCTCAAAACTTCCAAAAACCGGAAATTTTGCAAGTTTAGAATTTTCGGATGCGTATGAAAACTATTTAAAGGTAATCAATCCTTCTRAAAATTGACACAGGTGTACACAAGACTTAGTTTTACCATAATATGCAAAAAAATTGGGGTCGTCGCTGAAATTTTTTATTTATTTTGGCTGGAACTTTGGCTGAAAATCGCGTTTTACGGCCACATACGAATTTTGATTTTTCTTCAAAATCCAATCTCCCATTTCATAAACTACCAGAATTCGTCAAAAAATCTGGTGGCACGAACTTCCATCTAACACTTTTAGCCCATTTTGTCAGTCCGACTCCTATTTTTCGAAGTTTTCGAATCAAAATAATGAAAATATTGAAAAACTGATGGTTCCATTCGATTTTTCGCAGTCGATTACGTAGGGACAAGTTTTAACCCAAAAAATAATGCGTTTCTAACGCCCGGTACAAGACTTCAAAAATGAACTTCTGAAAAGGGGAGAAAAATTTGGTCGCCCCGCCCCTTTTTATTGCGGCGCCTATTTATACGAAATTAATACACTTTTCAGTTCCCAGCAAAATACGAACACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATTTTCAAGTTAGGATTGTA</pcr_primer_p1>
		<pcr_primer_p2>GGGAACTGAAAAGTGTATTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>659</pcr_amplicon_size>
		<canonical_amplicon>CGAATTTTCAAGTTAGGATTGTATTTAGTGGCAAATTTTGCGTAGAATCTTATGGTAAAAAGAAATTCGGTGGCACTAATCTGTGTCATCCTCAAAACTTCCAAAAACCGGAAATTTTGCAAGTTTAGAATTTTCGGATGCGTATGAAAACTATTTAAAGGTAATCAATCCTTCTAAAAATTGACACAGGTGTACACAAGACTTAGTTTTACCATAATATGCAAAAAAATTGGGGTCGTCGCTGAAATTTTTTATTTATTTTGGCTGGAACTTTGGCTGAAAATCGCGTTTTACGGCCACATACGAATTTTGATTTTTCTTCAAAATCCAATCTCCCATTTCATAAACTACCAGAATTCGTCAAAAAATCTGGTGGCACGAACTTCCATCTAACACTTTTAGCCCATTTTGTCAGTCCGACTCCTATTTTTCGAAGTTTTCGAATCAAAATAATGAAAATATTGAAAAACTGATGGTTCCATTCGATTTTTCGCAGTCGATTACGTAGGGACAAGTTTTAACCCAAAAAATAATGCGTTTCTAACGCCCGGTACAAGACTTCAAAAATGAACTTCTGAAAAGGGGAGAAAAATTTGGTCGCCCCGCCCCTTTTTATTGCGGCGCCTATTTATACGAAATTAATACACTTTTCAGTTCCC</canonical_amplicon>
		<polymorphic_amplicon>CGAATTTTCAAGTTAGGATTGTATTTAGTGGCAAATTTTGCGTAGAATCTTATGGTAAAAAGAAATTCGGTGGCACTAATCTGTGTCATCCTCAAAACTTCCAAAAACCGGAAATTTTGCAAGTTTAGAATTTTCGGATGCGTATGAAAACTATTTAAAGGTAATCAATCCTTCTRAAAATTGACACAGGTGTACACAAGACTTAGTTTTACCATAATATGCAAAAAAATTGGGGTCGTCGCTGAAATTTTTTATTTATTTTGGCTGGAACTTTGGCTGAAAATCGCGTTTTACGGCCACATACGAATTTTGATTTTTCTTCAAAATCCAATCTCCCATTTCATAAACTACCAGAATTCGTCAAAAAATCTGGTGGCACGAACTTCCATCTAACACTTTTAGCCCATTTTGTCAGTCCGACTCCTATTTTTCGAAGTTTTCGAATCAAAATAATGAAAATATTGAAAAACTGATGGTTCCATTCGATTTTTCGCAGTCGATTACGTAGGGACAAGTTTTAACCCAAAAAATAATGCGTTTCTAACGCCCGGTACAAGACTTCAAAAATGAACTTCTGAAAAGGGGAGAAAAATTTGGTCGCCCCGCCCCTTTTTATTGCGGCGCCTATTTATACGAAATTAATACACTTTTCAGTTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31806</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>3685</contig_pos>
        <strand></strand>
        <context>TCTTTCCTGG[G/A]CCACCCTTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACCACCTGGTAATTTTGTTCGGTCCCGTGAGAACATGGGGTCTTTCCTGG</left_flank>
        <right_flank>CCACCCTTCCGAGGTTTTGGTGAGGTGAAGACAGTTTTTTGTTAATTACA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCACTTACTGTGGCTGACCATCCATGGCGTCGTACAGGAAACTGGAGTTGACTGAAGCAAACATAACTTTTGATGAACCTGGAAATAAATAAACCGAAAATAATGAAATATTTGAAACGCCGGAAGCGCGGCAAATAGGCTTGTACTTAAAAATACGCTTAAAACCTTTAATAGAAGAGGCACCCCTAACTTTCAGCCAGTTCATCTCGGTTCCCGTAATAAAGATTAAAAAACAGTCAACTGATAAATTGCTTATCACAATGTCACAAACATTTTATCAGTTGACACATTTTTGATATCTTCCACAAGAACCAAGACAATTGAACTCAAAATTGAGGATTTACGGCATTCAAGAAACAAGACCAAAACAAAACGAATGACTTCCGATTCTAATATCTCGATGGGCGGATCTAAAAGGTAAAGACAGTTCTTTTCTGTTAATTACAGTACCACCTGGTAATTTTGTTCGGTCCCGTGAGAACATGGGGTCTTTCCTGGGCCACCCTTCCGAGGTTTTGGTGAGGTGAAGACAGTTTTTTGTTAATTACAGCACCTGCCGGTTTTGTATGGTCCTAGAAAACCTTGTGGTCCTTTTTGAACCATCCTGGATCATGGGAAAATTCATTGAGCCTGAAAACAAAAAAAACTGGAAATCTTGTATATTCGCTCTATTGGGAATTTTTTGATGAGAATTGTGGATTCGTTTTTAGAAATTTTATAAAGGAATGAATGAATTTCCACAATAGCCAGACGTATAAAAGTGTTAGAAACAGGGATGGTGCGAAAAAAATAACTTTTTGAAAGTTGAGTTTTCTAGGCCACCTCGTTAAAATGACTTAGAAAACGTATCAGGTGAATGTTATAACATTTTTAGGCCATAGAATTAGGTGCCCTAAAGAACTCAACATGCAATAGTAGGCCTTGTTAAAATGGCCTAGAAATGACTTGATATTTAGAGTATTCCATGGCCACTCATGATTTTTTCTGATTTCTTTTCTT</canonical>
            <polymorphic>AGCACTTACTGTGGCTGACCATCCATGGCGTCGTACAGGAAACTGGAGTTGACTGAAGCAAACATAACTTTTGATGAACCTGGAAATAAATAAACCGAAAATAATGAAATATTTGAAACGCCGGAAGCGCGGCAAATAGGCTTGTACTTAAAAATACGCTTAAAACCTTTAATAGAAGAGGCACCCCTAACTTTCAGCCAGTTCATCTCGGTTCCCGTAATAAAGATTAAAAAACAGTCAACTGATAAATTGCTTATCACAATGTCACAAACATTTTATCAGTTGACACATTTTTGATATCTTCCACAAGAACCAAGACAATTGAACTCAAAATTGAGGATTTACGGCATTCAAGAAACAAGACCAAAACAAAACGAATGACTTCCGATTCTAATATCTCGATGGGCGGATCTAAAAGGTAAAGACAGTTCTTTTCTGTTAATTACAGTACCACCTGGTAATTTTGTTCGGTCCCGTGAGAACATGGGGTCTTTCCTGGRCCACCCTTCCGAGGTTTTGGTGAGGTGAAGACAGTTTTTTGTTAATTACAGCACCTGCCGGTTTTGTATGGTCCTAGAAAACCTTGTGGTCCTTTTTGAACCATCCTGGATCATGGGAAAATTCATTGAGCCTGAAAACAAAAAAAACTGGAAATCTTGTATATTCGCTCTATTGGGAATTTTTTGATGAGAATTGTGGATTCGTTTTTAGAAATTTTATAAAGGAATGAATGAATTTCCACAATAGCCAGACGTATAAAAGTGTTAGAAACAGGGATGGTGCGAAAAAAATAACTTTTTGAAAGTTGAGTTTTCTAGGCCACCTCGTTAAAATGACTTAGAAAACGTATCAGGTGAATGTTATAACATTTTTAGGCCATAGAATTAGGTGCCCTAAAGAACTCAACATGCAATAGTAGGCCTTGTTAAAATGGCCTAGAAATGACTTGATATTTAGAGTATTCCATGGCCACTCATGATTTTTTCTGATTTCTTTTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>472 455 36 23 14</canonical_bands>
                <polymorphic_bands>486 455 36 23</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 319 57 44 35 31 14</canonical_bands>
                <polymorphic_bands>819 57 44 35 31 14</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>303 130 126 117 72 57 57 44 35 31 14 14</canonical_bands>
                <polymorphic_bands>433 126 117 72 57 57 44 35 31 14 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGTAAAGACAGTTCTTTTCTGTT</pcr_primer_p1>
		<pcr_primer_p2>CGAATATACAAGATTTCCAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGGTAAAGACAGTTCTTTTCTGTTAATTACAGTACCACCTGGTAATTTTGTTCGGTCCCGTGAGAACATGGGGTCTTTCCTGGGCCACCCTTCCGAGGTTTTGGTGAGGTGAAGACAGTTTTTTGTTAATTACAGCACCTGCCGGTTTTGTATGGTCCTAGAAAACCTTGTGGTCCTTTTTGAACCATCCTGGATCATGGGAAAATTCATTGAGCCTGAAAACAAAAAAAACTGGAAATCTTGTATATTCG</canonical_amplicon>
		<polymorphic_amplicon>AGGTAAAGACAGTTCTTTTCTGTTAATTACAGTACCACCTGGTAATTTTGTTCGGTCCCGTGAGAACATGGGGTCTTTCCTGGRCCACCCTTCCGAGGTTTTGGTGAGGTGAAGACAGTTTTTTGTTAATTACAGCACCTGCCGGTTTTGTATGGTCCTAGAAAACCTTGTGGTCCTTTTTGAACCATCCTGGATCATGGGAAAATTCATTGAGCCTGAAAACAAAAAAAACTGGAAATCTTGTATATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31807</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>3709</contig_pos>
        <strand></strand>
        <context>GTTTTGGTGA[G/A]GTGAAGACAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CCGTGAGAACATGGGGTCTTTCCTGGGCCACCCTTCCGAGGTTTTGGTGA</left_flank>
        <right_flank>GTGAAGACAGTTTTTTGTTAATTACAGCACCTGCCGGTTTTGTATGGTCC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGCGTCGTACAGGAAACTGGAGTTGACTGAAGCAAACATAACTTTTGATGAACCTGGAAATAAATAAACCGAAAATAATGAAATATTTGAAACGCCGGAAGCGCGGCAAATAGGCTTGTACTTAAAAATACGCTTAAAACCTTTAATAGAAGAGGCACCCCTAACTTTCAGCCAGTTCATCTCGGTTCCCGTAATAAAGATTAAAAAACAGTCAACTGATAAATTGCTTATCACAATGTCACAAACATTTTATCAGTTGACACATTTTTGATATCTTCCACAAGAACCAAGACAATTGAACTCAAAATTGAGGATTTACGGCATTCAAGAAACAAGACCAAAACAAAACGAATGACTTCCGATTCTAATATCTCGATGGGCGGATCTAAAAGGTAAAGACAGTTCTTTTCTGTTAATTACAGTACCACCTGGTAATTTTGTTCGGTCCCGTGAGAACATGGGGTCTTTCCTGGGCCACCCTTCCGAGGTTTTGGTGAGGTGAAGACAGTTTTTTGTTAATTACAGCACCTGCCGGTTTTGTATGGTCCTAGAAAACCTTGTGGTCCTTTTTGAACCATCCTGGATCATGGGAAAATTCATTGAGCCTGAAAACAAAAAAAACTGGAAATCTTGTATATTCGCTCTATTGGGAATTTTTTGATGAGAATTGTGGATTCGTTTTTAGAAATTTTATAAAGGAATGAATGAATTTCCACAATAGCCAGACGTATAAAAGTGTTAGAAACAGGGATGGTGCGAAAAAAATAACTTTTTGAAAGTTGAGTTTTCTAGGCCACCTCGTTAAAATGACTTAGAAAACGTATCAGGTGAATGTTATAACATTTTTAGGCCATAGAATTAGGTGCCCTAAAGAACTCAACATGCAATAGTAGGCCTTGTTAAAATGGCCTAGAAATGACTTGATATTTAGAGTATTCCATGGCCACTCATGATTTTTTCTGATTTCTTTTCTTTTTTATTTATGATGAGCCATATGA</canonical>
            <polymorphic>ATGGCGTCGTACAGGAAACTGGAGTTGACTGAAGCAAACATAACTTTTGATGAACCTGGAAATAAATAAACCGAAAATAATGAAATATTTGAAACGCCGGAAGCGCGGCAAATAGGCTTGTACTTAAAAATACGCTTAAAACCTTTAATAGAAGAGGCACCCCTAACTTTCAGCCAGTTCATCTCGGTTCCCGTAATAAAGATTAAAAAACAGTCAACTGATAAATTGCTTATCACAATGTCACAAACATTTTATCAGTTGACACATTTTTGATATCTTCCACAAGAACCAAGACAATTGAACTCAAAATTGAGGATTTACGGCATTCAAGAAACAAGACCAAAACAAAACGAATGACTTCCGATTCTAATATCTCGATGGGCGGATCTAAAAGGTAAAGACAGTTCTTTTCTGTTAATTACAGTACCACCTGGTAATTTTGTTCGGTCCCGTGAGAACATGGGGTCTTTCCTGGGCCACCCTTCCGAGGTTTTGGTGARGTGAAGACAGTTTTTTGTTAATTACAGCACCTGCCGGTTTTGTATGGTCCTAGAAAACCTTGTGGTCCTTTTTGAACCATCCTGGATCATGGGAAAATTCATTGAGCCTGAAAACAAAAAAAACTGGAAATCTTGTATATTCGCTCTATTGGGAATTTTTTGATGAGAATTGTGGATTCGTTTTTAGAAATTTTATAAAGGAATGAATGAATTTCCACAATAGCCAGACGTATAAAAGTGTTAGAAACAGGGATGGTGCGAAAAAAATAACTTTTTGAAAGTTGAGTTTTCTAGGCCACCTCGTTAAAATGACTTAGAAAACGTATCAGGTGAATGTTATAACATTTTTAGGCCATAGAATTAGGTGCCCTAAAGAACTCAACATGCAATAGTAGGCCTTGTTAAAATGGCCTAGAAATGACTTGATATTTAGAGTATTCCATGGCCACTCATGATTTTTTCTGATTTCTTTTCTTTTTTATTTATGATGAGCCATATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGTAAAGACAGTTCTTTTCTGTT</pcr_primer_p1>
		<pcr_primer_p2>CGAATATACAAGATTTCCAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGGTAAAGACAGTTCTTTTCTGTTAATTACAGTACCACCTGGTAATTTTGTTCGGTCCCGTGAGAACATGGGGTCTTTCCTGGGCCACCCTTCCGAGGTTTTGGTGAGGTGAAGACAGTTTTTTGTTAATTACAGCACCTGCCGGTTTTGTATGGTCCTAGAAAACCTTGTGGTCCTTTTTGAACCATCCTGGATCATGGGAAAATTCATTGAGCCTGAAAACAAAAAAAACTGGAAATCTTGTATATTCG</canonical_amplicon>
		<polymorphic_amplicon>AGGTAAAGACAGTTCTTTTCTGTTAATTACAGTACCACCTGGTAATTTTGTTCGGTCCCGTGAGAACATGGGGTCTTTCCTGGGCCACCCTTCCGAGGTTTTGGTGARGTGAAGACAGTTTTTTGTTAATTACAGCACCTGCCGGTTTTGTATGGTCCTAGAAAACCTTGTGGTCCTTTTTGAACCATCCTGGATCATGGGAAAATTCATTGAGCCTGAAAACAAAAAAAACTGGAAATCTTGTATATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31808</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>3865</contig_pos>
        <strand></strand>
        <context>CTATTGGGAA[T/A]TTTTTGATGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GCCTGAAAACAAAAAAAACTGGAAATCTTGTATATTCGCTCTATTGGGAA</left_flank>
        <right_flank>TTTTTGATGAGAATTGTGGATTCGTTTTTAGAAATTTTATAAAGGAATGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCACCCCTAACTTTCAGCCAGTTCATCTCGGTTCCCGTAATAAAGATTAAAAAACAGTCAACTGATAAATTGCTTATCACAATGTCACAAACATTTTATCAGTTGACACATTTTTGATATCTTCCACAAGAACCAAGACAATTGAACTCAAAATTGAGGATTTACGGCATTCAAGAAACAAGACCAAAACAAAACGAATGACTTCCGATTCTAATATCTCGATGGGCGGATCTAAAAGGTAAAGACAGTTCTTTTCTGTTAATTACAGTACCACCTGGTAATTTTGTTCGGTCCCGTGAGAACATGGGGTCTTTCCTGGGCCACCCTTCCGAGGTTTTGGTGAGGTGAAGACAGTTTTTTGTTAATTACAGCACCTGCCGGTTTTGTATGGTCCTAGAAAACCTTGTGGTCCTTTTTGAACCATCCTGGATCATGGGAAAATTCATTGAGCCTGAAAACAAAAAAAACTGGAAATCTTGTATATTCGCTCTATTGGGAATTTTTTGATGAGAATTGTGGATTCGTTTTTAGAAATTTTATAAAGGAATGAATGAATTTCCACAATAGCCAGACGTATAAAAGTGTTAGAAACAGGGATGGTGCGAAAAAAATAACTTTTTGAAAGTTGAGTTTTCTAGGCCACCTCGTTAAAATGACTTAGAAAACGTATCAGGTGAATGTTATAACATTTTTAGGCCATAGAATTAGGTGCCCTAAAGAACTCAACATGCAATAGTAGGCCTTGTTAAAATGGCCTAGAAATGACTTGATATTTAGAGTATTCCATGGCCACTCATGATTTTTTCTGATTTCTTTTCTTTTTTATTTATGATGAGCCATATGAGCTTCTTAATAAAAATCACAGAAAGGCTCATGAGCCTTGATGAGCTTTTTGATAAAACAAAAAAAGAGTCGCGTGATTTGATTTTCTGGGGAATAGCAACATCCAGGTCTGGATTAAAGAGAGACGAGCGGAGCACTGGAATTGGGAAAAAAAGAC</canonical>
            <polymorphic>GCACCCCTAACTTTCAGCCAGTTCATCTCGGTTCCCGTAATAAAGATTAAAAAACAGTCAACTGATAAATTGCTTATCACAATGTCACAAACATTTTATCAGTTGACACATTTTTGATATCTTCCACAAGAACCAAGACAATTGAACTCAAAATTGAGGATTTACGGCATTCAAGAAACAAGACCAAAACAAAACGAATGACTTCCGATTCTAATATCTCGATGGGCGGATCTAAAAGGTAAAGACAGTTCTTTTCTGTTAATTACAGTACCACCTGGTAATTTTGTTCGGTCCCGTGAGAACATGGGGTCTTTCCTGGGCCACCCTTCCGAGGTTTTGGTGAGGTGAAGACAGTTTTTTGTTAATTACAGCACCTGCCGGTTTTGTATGGTCCTAGAAAACCTTGTGGTCCTTTTTGAACCATCCTGGATCATGGGAAAATTCATTGAGCCTGAAAACAAAAAAAACTGGAAATCTTGTATATTCGCTCTATTGGGAAWTTTTTGATGAGAATTGTGGATTCGTTTTTAGAAATTTTATAAAGGAATGAATGAATTTCCACAATAGCCAGACGTATAAAAGTGTTAGAAACAGGGATGGTGCGAAAAAAATAACTTTTTGAAAGTTGAGTTTTCTAGGCCACCTCGTTAAAATGACTTAGAAAACGTATCAGGTGAATGTTATAACATTTTTAGGCCATAGAATTAGGTGCCCTAAAGAACTCAACATGCAATAGTAGGCCTTGTTAAAATGGCCTAGAAATGACTTGATATTTAGAGTATTCCATGGCCACTCATGATTTTTTCTGATTTCTTTTCTTTTTTATTTATGATGAGCCATATGAGCTTCTTAATAAAAATCACAGAAAGGCTCATGAGCCTTGATGAGCTTTTTGATAAAACAAAAAAAGAGTCGCGTGATTTGATTTTCTGGGGAATAGCAACATCCAGGTCTGGATTAAAGAGAGACGAGCGGAGCACTGGAATTGGGAAAAAAAGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>447 439 58 35 21</canonical_bands>
                <polymorphic_bands>447 439 93 21</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>281 149 109 84 76 72 67 58 21 21 19 17 14 12</canonical_bands>
                <polymorphic_bands>281 149 109 84 76 72 72 67 21 21 19 17 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTTAATTACAGCACCTG</pcr_primer_p1>
		<pcr_primer_p2>CATCCCTGTTTCTAACACTTTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTTAATTACAGCACCTGCCGGTTTTGTATGGTCCTAGAAAACCTTGTGGTCCTTTTTGAACCATCCTGGATCATGGGAAAATTCATTGAGCCTGAAAACAAAAAAAACTGGAAATCTTGTATATTCGCTCTATTGGGAATTTTTTGATGAGAATTGTGGATTCGTTTTTAGAAATTTTATAAAGGAATGAATGAATTTCCACAATAGCCAGACGTATAAAAGTGTTAGAAACAGGGATG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTTAATTACAGCACCTGCCGGTTTTGTATGGTCCTAGAAAACCTTGTGGTCCTTTTTGAACCATCCTGGATCATGGGAAAATTCATTGAGCCTGAAAACAAAAAAAACTGGAAATCTTGTATATTCGCTCTATTGGGAAWTTTTTGATGAGAATTGTGGATTCGTTTTTAGAAATTTTATAAAGGAATGAATGAATTTCCACAATAGCCAGACGTATAAAAGTGTTAGAAACAGGGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31809</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>3918</contig_pos>
        <strand></strand>
        <context>AGGAATGAAT[G/A]AATTTCCACA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTGATGAGAATTGTGGATTCGTTTTTAGAAATTTTATAAAGGAATGAAT</left_flank>
        <right_flank>AATTTCCACAATAGCCAGACGTATAAAAGTGTTAGAAACAGGGATGGTGC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGTCAACTGATAAATTGCTTATCACAATGTCACAAACATTTTATCAGTTGACACATTTTTGATATCTTCCACAAGAACCAAGACAATTGAACTCAAAATTGAGGATTTACGGCATTCAAGAAACAAGACCAAAACAAAACGAATGACTTCCGATTCTAATATCTCGATGGGCGGATCTAAAAGGTAAAGACAGTTCTTTTCTGTTAATTACAGTACCACCTGGTAATTTTGTTCGGTCCCGTGAGAACATGGGGTCTTTCCTGGGCCACCCTTCCGAGGTTTTGGTGAGGTGAAGACAGTTTTTTGTTAATTACAGCACCTGCCGGTTTTGTATGGTCCTAGAAAACCTTGTGGTCCTTTTTGAACCATCCTGGATCATGGGAAAATTCATTGAGCCTGAAAACAAAAAAAACTGGAAATCTTGTATATTCGCTCTATTGGGAATTTTTTGATGAGAATTGTGGATTCGTTTTTAGAAATTTTATAAAGGAATGAATGAATTTCCACAATAGCCAGACGTATAAAAGTGTTAGAAACAGGGATGGTGCGAAAAAAATAACTTTTTGAAAGTTGAGTTTTCTAGGCCACCTCGTTAAAATGACTTAGAAAACGTATCAGGTGAATGTTATAACATTTTTAGGCCATAGAATTAGGTGCCCTAAAGAACTCAACATGCAATAGTAGGCCTTGTTAAAATGGCCTAGAAATGACTTGATATTTAGAGTATTCCATGGCCACTCATGATTTTTTCTGATTTCTTTTCTTTTTTATTTATGATGAGCCATATGAGCTTCTTAATAAAAATCACAGAAAGGCTCATGAGCCTTGATGAGCTTTTTGATAAAACAAAAAAAGAGTCGCGTGATTTGATTTTCTGGGGAATAGCAACATCCAGGTCTGGATTAAAGAGAGACGAGCGGAGCACTGGAATTGGGAAAAAAAGACATCAAACTATACTTTTTTCGAAAACTAACAGATTTTATCATCTTGGTAGATAG</canonical>
            <polymorphic>ACAGTCAACTGATAAATTGCTTATCACAATGTCACAAACATTTTATCAGTTGACACATTTTTGATATCTTCCACAAGAACCAAGACAATTGAACTCAAAATTGAGGATTTACGGCATTCAAGAAACAAGACCAAAACAAAACGAATGACTTCCGATTCTAATATCTCGATGGGCGGATCTAAAAGGTAAAGACAGTTCTTTTCTGTTAATTACAGTACCACCTGGTAATTTTGTTCGGTCCCGTGAGAACATGGGGTCTTTCCTGGGCCACCCTTCCGAGGTTTTGGTGAGGTGAAGACAGTTTTTTGTTAATTACAGCACCTGCCGGTTTTGTATGGTCCTAGAAAACCTTGTGGTCCTTTTTGAACCATCCTGGATCATGGGAAAATTCATTGAGCCTGAAAACAAAAAAAACTGGAAATCTTGTATATTCGCTCTATTGGGAATTTTTTGATGAGAATTGTGGATTCGTTTTTAGAAATTTTATAAAGGAATGAATRAATTTCCACAATAGCCAGACGTATAAAAGTGTTAGAAACAGGGATGGTGCGAAAAAAATAACTTTTTGAAAGTTGAGTTTTCTAGGCCACCTCGTTAAAATGACTTAGAAAACGTATCAGGTGAATGTTATAACATTTTTAGGCCATAGAATTAGGTGCCCTAAAGAACTCAACATGCAATAGTAGGCCTTGTTAAAATGGCCTAGAAATGACTTGATATTTAGAGTATTCCATGGCCACTCATGATTTTTTCTGATTTCTTTTCTTTTTTATTTATGATGAGCCATATGAGCTTCTTAATAAAAATCACAGAAAGGCTCATGAGCCTTGATGAGCTTTTTGATAAAACAAAAAAAGAGTCGCGTGATTTGATTTTCTGGGGAATAGCAACATCCAGGTCTGGATTAAAGAGAGACGAGCGGAGCACTGGAATTGGGAAAAAAAGACATCAAACTATACTTTTTTCGAAAACTAACAGATTTTATCATCTTGGTAGATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>500 386 58 35 21</canonical_bands>
                <polymorphic_bands>521 386 58 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGATGAGAATTGTGGATTC</pcr_primer_p1>
		<pcr_primer_p2>CAGACCTGGATGTTGCTATT</pcr_primer_p2>
		<pcr_amplicon_size>453</pcr_amplicon_size>
		<canonical_amplicon>TTTGATGAGAATTGTGGATTCGTTTTTAGAAATTTTATAAAGGAATGAATGAATTTCCACAATAGCCAGACGTATAAAAGTGTTAGAAACAGGGATGGTGCGAAAAAAATAACTTTTTGAAAGTTGAGTTTTCTAGGCCACCTCGTTAAAATGACTTAGAAAACGTATCAGGTGAATGTTATAACATTTTTAGGCCATAGAATTAGGTGCCCTAAAGAACTCAACATGCAATAGTAGGCCTTGTTAAAATGGCCTAGAAATGACTTGATATTTAGAGTATTCCATGGCCACTCATGATTTTTTCTGATTTCTTTTCTTTTTTATTTATGATGAGCCATATGAGCTTCTTAATAAAAATCACAGAAAGGCTCATGAGCCTTGATGAGCTTTTTGATAAAACAAAAAAAGAGTCGCGTGATTTGATTTTCTGGGGAATAGCAACATCCAGGTCTG</canonical_amplicon>
		<polymorphic_amplicon>TTTGATGAGAATTGTGGATTCGTTTTTAGAAATTTTATAAAGGAATGAATRAATTTCCACAATAGCCAGACGTATAAAAGTGTTAGAAACAGGGATGGTGCGAAAAAAATAACTTTTTGAAAGTTGAGTTTTCTAGGCCACCTCGTTAAAATGACTTAGAAAACGTATCAGGTGAATGTTATAACATTTTTAGGCCATAGAATTAGGTGCCCTAAAGAACTCAACATGCAATAGTAGGCCTTGTTAAAATGGCCTAGAAATGACTTGATATTTAGAGTATTCCATGGCCACTCATGATTTTTTCTGATTTCTTTTCTTTTTTATTTATGATGAGCCATATGAGCTTCTTAATAAAAATCACAGAAAGGCTCATGAGCCTTGATGAGCTTTTTGATAAAACAAAAAAAGAGTCGCGTGATTTGATTTTCTGGGGAATAGCAACATCCAGGTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31810</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>3935</contig_pos>
        <strand></strand>
        <context>CACAATAGCC[A/G]GACGTATAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCGTTTTTAGAAATTTTATAAAGGAATGAATGAATTTCCACAATAGCC</left_flank>
        <right_flank>GACGTATAAAAGTGTTAGAAACAGGGATGGTGCGAAAAAAATAACTTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTTATCACAATGTCACAAACATTTTATCAGTTGACACATTTTTGATATCTTCCACAAGAACCAAGACAATTGAACTCAAAATTGAGGATTTACGGCATTCAAGAAACAAGACCAAAACAAAACGAATGACTTCCGATTCTAATATCTCGATGGGCGGATCTAAAAGGTAAAGACAGTTCTTTTCTGTTAATTACAGTACCACCTGGTAATTTTGTTCGGTCCCGTGAGAACATGGGGTCTTTCCTGGGCCACCCTTCCGAGGTTTTGGTGAGGTGAAGACAGTTTTTTGTTAATTACAGCACCTGCCGGTTTTGTATGGTCCTAGAAAACCTTGTGGTCCTTTTTGAACCATCCTGGATCATGGGAAAATTCATTGAGCCTGAAAACAAAAAAAACTGGAAATCTTGTATATTCGCTCTATTGGGAATTTTTTGATGAGAATTGTGGATTCGTTTTTAGAAATTTTATAAAGGAATGAATGAATTTCCACAATAGCCAGACGTATAAAAGTGTTAGAAACAGGGATGGTGCGAAAAAAATAACTTTTTGAAAGTTGAGTTTTCTAGGCCACCTCGTTAAAATGACTTAGAAAACGTATCAGGTGAATGTTATAACATTTTTAGGCCATAGAATTAGGTGCCCTAAAGAACTCAACATGCAATAGTAGGCCTTGTTAAAATGGCCTAGAAATGACTTGATATTTAGAGTATTCCATGGCCACTCATGATTTTTTCTGATTTCTTTTCTTTTTTATTTATGATGAGCCATATGAGCTTCTTAATAAAAATCACAGAAAGGCTCATGAGCCTTGATGAGCTTTTTGATAAAACAAAAAAAGAGTCGCGTGATTTGATTTTCTGGGGAATAGCAACATCCAGGTCTGGATTAAAGAGAGACGAGCGGAGCACTGGAATTGGGAAAAAAAGACATCAAACTATACTTTTTTCGAAAACTAACAGATTTTATCATCTTGGTAGATAGAAGAAGAAGCGGCGTTT</canonical>
            <polymorphic>TGCTTATCACAATGTCACAAACATTTTATCAGTTGACACATTTTTGATATCTTCCACAAGAACCAAGACAATTGAACTCAAAATTGAGGATTTACGGCATTCAAGAAACAAGACCAAAACAAAACGAATGACTTCCGATTCTAATATCTCGATGGGCGGATCTAAAAGGTAAAGACAGTTCTTTTCTGTTAATTACAGTACCACCTGGTAATTTTGTTCGGTCCCGTGAGAACATGGGGTCTTTCCTGGGCCACCCTTCCGAGGTTTTGGTGAGGTGAAGACAGTTTTTTGTTAATTACAGCACCTGCCGGTTTTGTATGGTCCTAGAAAACCTTGTGGTCCTTTTTGAACCATCCTGGATCATGGGAAAATTCATTGAGCCTGAAAACAAAAAAAACTGGAAATCTTGTATATTCGCTCTATTGGGAATTTTTTGATGAGAATTGTGGATTCGTTTTTAGAAATTTTATAAAGGAATGAATGAATTTCCACAATAGCCRGACGTATAAAAGTGTTAGAAACAGGGATGGTGCGAAAAAAATAACTTTTTGAAAGTTGAGTTTTCTAGGCCACCTCGTTAAAATGACTTAGAAAACGTATCAGGTGAATGTTATAACATTTTTAGGCCATAGAATTAGGTGCCCTAAAGAACTCAACATGCAATAGTAGGCCTTGTTAAAATGGCCTAGAAATGACTTGATATTTAGAGTATTCCATGGCCACTCATGATTTTTTCTGATTTCTTTTCTTTTTTATTTATGATGAGCCATATGAGCTTCTTAATAAAAATCACAGAAAGGCTCATGAGCCTTGATGAGCTTTTTGATAAAACAAAAAAAGAGTCGCGTGATTTGATTTTCTGGGGAATAGCAACATCCAGGTCTGGATTAAAGAGAGACGAGCGGAGCACTGGAATTGGGAAAAAAAGACATCAAACTATACTTTTTTCGAAAACTAACAGATTTTATCATCTTGGTAGATAGAAGAAGAAGCGGCGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAATTGTGGATTCGTTTTTAG</pcr_primer_p1>
		<pcr_primer_p2>CAGACCTGGATGTTGCTATT</pcr_primer_p2>
		<pcr_amplicon_size>446</pcr_amplicon_size>
		<canonical_amplicon>AGAATTGTGGATTCGTTTTTAGAAATTTTATAAAGGAATGAATGAATTTCCACAATAGCCAGACGTATAAAAGTGTTAGAAACAGGGATGGTGCGAAAAAAATAACTTTTTGAAAGTTGAGTTTTCTAGGCCACCTCGTTAAAATGACTTAGAAAACGTATCAGGTGAATGTTATAACATTTTTAGGCCATAGAATTAGGTGCCCTAAAGAACTCAACATGCAATAGTAGGCCTTGTTAAAATGGCCTAGAAATGACTTGATATTTAGAGTATTCCATGGCCACTCATGATTTTTTCTGATTTCTTTTCTTTTTTATTTATGATGAGCCATATGAGCTTCTTAATAAAAATCACAGAAAGGCTCATGAGCCTTGATGAGCTTTTTGATAAAACAAAAAAAGAGTCGCGTGATTTGATTTTCTGGGGAATAGCAACATCCAGGTCTG</canonical_amplicon>
		<polymorphic_amplicon>AGAATTGTGGATTCGTTTTTAGAAATTTTATAAAGGAATGAATGAATTTCCACAATAGCCRGACGTATAAAAGTGTTAGAAACAGGGATGGTGCGAAAAAAATAACTTTTTGAAAGTTGAGTTTTCTAGGCCACCTCGTTAAAATGACTTAGAAAACGTATCAGGTGAATGTTATAACATTTTTAGGCCATAGAATTAGGTGCCCTAAAGAACTCAACATGCAATAGTAGGCCTTGTTAAAATGGCCTAGAAATGACTTGATATTTAGAGTATTCCATGGCCACTCATGATTTTTTCTGATTTCTTTTCTTTTTTATTTATGATGAGCCATATGAGCTTCTTAATAAAAATCACAGAAAGGCTCATGAGCCTTGATGAGCTTTTTGATAAAACAAAAAAAGAGTCGCGTGATTTGATTTTCTGGGGAATAGCAACATCCAGGTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31811</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>43434</contig_pos>
        <strand></strand>
        <context>tttttaatat[T/C]tctgataaga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGTTGGTGACATTAAAGCAAACATCGTATCAGTTGATAGATTTTTAATAT</left_flank>
        <right_flank>TCTGATAAGAGCCAAGGTAATTGAGCTCAAAGGGTAAATACCTAGAAATA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTACGACAATCTTGGTCATCTGTTGTGAGTTCATTCTTGCTGAAAATTTAGTTTTTCAAGTTTTAGAAATGAAAAATTAGCAGATTAGCAAAAAAAAACAAGACACAGACAGTCGAAAAACATGAAGAAGAAAAAAATTGAACTGCATTTCAAGCTCAATTATCTCGGTCTCTAAAAGAAATATTGGAAGTTTGTCAACTGATAAAATCTTGCTTGAATAATGGAAAACATTTTGTTAGCTGGCAAATTTCCATTATCTCTTATAGGAGCCGAGATAATTGAGCTTGAAGTGCAAGTACCAACTATTATAGATATTTATGTTTAAAAATGAGAATTTCAAAGGAAGATAAAACTTATAAAATTACTCCTTTTAAGTATTCAGATGTAAGTTCAGCTCAATTATCTCGGTTCCTATACGAGATATCCAAAATATGCTTACTAGCAAAATGTTGGTGACATTAAAGCAAACATCGTATCAGTTGATAGATTTTTAATATTTCTGATAAGAGCCAAGGTAATTGAGCTCAAAGGGTAAATACCTAGAAATAAGGCAAGTAGAATCGGTCAGCCAAAACCATTGCTCATGGTTAATAGAGGTCTCCCGTATTTTTTCCTCGGTGGGGTCAAAGAGAGTAGTGTACTGCTGTGGAGACGGTAGACACGTGGAGTGTTTCTTTTTGGCCGGGGTTGGCAACTGGCGGGAAAAAGGATGAGGAGAAGAAGAAGAAAAAAAGACACCGAACGAAATATTTGATGAGAAAATTGATGAAATTATCTATGAAATAATTTCTTTTGAAAGGGATTGAGAATTTCCGAATAATCTATTTCGGAAGTCAGTATTTCAAGGGGAAGAGAAAAGTTGCGAAATTATAAATTTTTTTGTTGAAATTTCTAAAGTCCGCAATGTGGCGTACGGAACAGATACATGAGACCCTACGACGGAAAAAAGTAAAGGAGGAAGATGCCAACTAGAAAACAAACAAGAGGAGAACGATGGA</canonical>
            <polymorphic>CTTTACGACAATCTTGGTCATCTGTTGTGAGTTCATTCTTGCTGAAAATTTAGTTTTTCAAGTTTTAGAAATGAAAAATTAGCAGATTAGCAAAAAAAAACAAGACACAGACAGTCGAAAAACATGAAGAAGAAAAAAATTGAACTGCATTTCAAGCTCAATTATCTCGGTCTCTAAAAGAAATATTGGAAGTTTGTCAACTGATAAAATCTTGCTTGAATAATGGAAAACATTTTGTTAGCTGGCAAATTTCCATTATCTCTTATAGGAGCCGAGATAATTGAGCTTGAAGTGCAAGTACCAACTATTATAGATATTTATGTTTAAAAATGAGAATTTCAAAGGAAGATAAAACTTATAAAATTACTCCTTTTAAGTATTCAGATGTAAGTTCAGCTCAATTATCTCGGTTCCTATACGAGATATCCAAAATATGCTTACTAGCAAAATGTTGGTGACATTAAAGCAAACATCGTATCAGTTGATAGATTTTTAATATYTCTGATAAGAGCCAAGGTAATTGAGCTCAAAGGGTAAATACCTAGAAATAAGGCAAGTAGAATCGGTCAGCCAAAACCATTGCTCATGGTTAATAGAGGTCTCCCGTATTTTTTCCTCGGTGGGGTCAAAGAGAGTAGTGTACTGCTGTGGAGACGGTAGACACGTGGAGTGTTTCTTTTTGGCCGGGGTTGGCAACTGGCGGGAAAAAGGATGAGGAGAAGAAGAAGAAAAAAAGACACCGAACGAAATATTTGATGAGAAAATTGATGAAATTATCTATGAAATAATTTCTTTTGAAAGGGATTGAGAATTTCCGAATAATCTATTTCGGAAGTCAGTATTTCAAGGGGAAGAGAAAAGTTGCGAAATTATAAATTTTTTTGTTGAAATTTCTAAAGTCCGCAATGTGGCGTACGGAACAGATACATGAGACCCTACGACGGAAAAAAGTAAAGGAGGAAGATGCCAACTAGAAAACAAACAAGAGGAGAACGATGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>313 253 250 184</canonical_bands>
                <polymorphic_bands>566 250 184</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGAGAATTTCAAAGGAAGAT</pcr_primer_p1>
		<pcr_primer_p2>CGATTCTACTTGCCTTATTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AAATGAGAATTTCAAAGGAAGATAAAACTTATAAAATTACTCCTTTTAAGTATTCAGATGTAAGTTCAGCTCAATTATCTCGGTTCCTATACGAGATATCCAAAATATGCTTACTAGCAAAATGTTGGTGACATTAAAGCAAACATCGTATCAGTTGATAGATTTTTAATATTTCTGATAAGAGCCAAGGTAATTGAGCTCAAAGGGTAAATACCTAGAAATAAGGCAAGTAGAATCG</canonical_amplicon>
		<polymorphic_amplicon>AAATGAGAATTTCAAAGGAAGATAAAACTTATAAAATTACTCCTTTTAAGTATTCAGATGTAAGTTCAGCTCAATTATCTCGGTTCCTATACGAGATATCCAAAATATGCTTACTAGCAAAATGTTGGTGACATTAAAGCAAACATCGTATCAGTTGATAGATTTTTAATATYTCTGATAAGAGCCAAGGTAATTGAGCTCAAAGGGTAAATACCTAGAAATAAGGCAAGTAGAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31812</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>43668</contig_pos>
        <strand>+</strand>
        <context>AGAAGAAAAA[A/G]ARACACCGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGGGGTTGGCAACTGGCGGGAAAAAGGATGAGGAGAAGAAGAAGAAAAA</left_flank>
        <right_flank>AGACACCGAACGAAATATTTGATGAGAAAATTGATGAAATTATCTATGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTAGCTGGCAAATTTCCATTATCTCTTATAGGAGCCGAGATAATTGAGCTTGAAGTGCAAGTACCAACTATTATAGATATTTATGTTTAAAAATGAGAATTTCAAAGGAAGATAAAACTTATAAAATTACTCCTTTTAAGTATTCAGATGTAAGTTCAGCTCAATTATCTCGGTTCCTATACGAGATATCCAAAATATGCTTACTAGCAAAATGTTGGTGACATTAAAGCAAACATCGTATCAGTTGATAGATTTTTAATATTTCTGATAAGAGCCAAGGTAATTGAGCTCAAAGGGTAAATACCTAGAAATAAGGCAAGTAGAATCGGTCAGCCAAAACCATTGCTCATGGTTAATAGAGGTCTCCCGTATTTTTTCCTCGGTGGGGTCAAAGAGAGTAGTGTACTGCTGTGGAGACGGTAGACACGTGGAGTGTTTCTTTTTGGCCGGGGTTGGCAACTGGCGGGAAAAAGGATGAGGAGAAGAAGAAGAAAAAAAGACACCGAACGAAATATTTGATGAGAAAATTGATGAAATTATCTATGAAATAATTTCTTTTGAAAGGGATTGAGAATTTCCGAATAATCTATTTCGGAAGTCAGTATTTCAAGGGGAAGAGAAAAGTTGCGAAATTATAAATTTTTTTGTTGAAATTTCTAAAGTCCGCAATGTGGCGTACGGAACAGATACATGAGACCCTACGACGGAAAAAAGTAAAGGAGGAAGATGCCAACTAGAAAACAAACAAGAGGAGAACGATGGAAGAATTCTGGTGGCGGGAAGGAGAGAAATTTGAAAAAGAAGAGAAAAAGTCAAACTTGGGGAAATCATCTAATGGCAAAACTAGAAAAAGAGAAGAATGAAACAATCAAATTTCGAAATTCGAGAAAAATTGAAAAAATACATTTTTGGGATATTTCGAAATACCTCAAATCAAATATCGGTATTTTTAAAATTCGGAAATTTTAACTTTAAAAAAGTGAATTTTCCTTTTTTG</canonical>
            <polymorphic>TTGTTAGCTGGCAAATTTCCATTATCTCTTATAGGAGCCGAGATAATTGAGCTTGAAGTGCAAGTACCAACTATTATAGATATTTATGTTTAAAAATGAGAATTTCAAAGGAAGATAAAACTTATAAAATTACTCCTTTTAAGTATTCAGATGTAAGTTCAGCTCAATTATCTCGGTTCCTATACGAGATATCCAAAATATGCTTACTAGCAAAATGTTGGTGACATTAAAGCAAACATCGTATCAGTTGATAGATTTTTAATATTTCTGATAAGAGCCAAGGTAATTGAGCTCAAAGGGTAAATACCTAGAAATAAGGCAAGTAGAATCGGTCAGCCAAAACCATTGCTCATGGTTAATAGAGGTCTCCCGTATTTTTTCCTCGGTGGGGTCAAAGAGAGTAGTGTACTGCTGTGGAGACGGTAGACACGTGGAGTGTTTCTTTTTGGCCGGGGTTGGCAACTGGCGGGAAAAAGGATGAGGAGAAGAAGAAGAAAAARAGACACCGAACGAAATATTTGATGAGAAAATTGATGAAATTATCTATGAAATAATTTCTTTTGAAAGGGATTGAGAATTTCCGAATAATCTATTTCGGAAGTCAGTATTTCAAGGGGAAGAGAAAAGTTGCGAAATTATAAATTTTTTTGTTGAAATTTCTAAAGTCCGCAATGTGGCGTACGGAACAGATACATGAGACCCTACGACGGAAAAAAGTAAAGGAGGAAGATGCCAACTAGAAAACAAACAAGAGGAGAACGATGGAAGAATTCTGGTGGCGGGAAGGAGAGAAATTTGAAAAAGAAGAGAAAAAGTCAAACTTGGGGAAATCATCTAATGGCAAAACTAGAAAAAGAGAAGAATGAAACAATCAAATTTCGAAATTCGAGAAAAATTGAAAAAATACATTTTTGGGATATTTCGAAATACCTCAAATCAAATATCGGTATTTTTAAAATTCGGAAATTTTAACTTTAAAAAAGTGAATTTTCCTTTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGAGTAGTGTACTGCTGTGGA</pcr_primer_p1>
		<pcr_primer_p2>TTTATAATTTCGCAACTTTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGAGAGTAGTGTACTGCTGTGGAGACGGTAGACACGTGGAGTGTTTCTTTTTGGCCGGGGTTGGCAACTGGCGGGAAAAAGGATGAGGAGAAGAAGAAGAAAAAAAGACACCGAACGAAATATTTGATGAGAAAATTGATGAAATTATCTATGAAATAATTTCTTTTGAAAGGGATTGAGAATTTCCGAATAATCTATTTCGGAAGTCAGTATTTCAAGGGGAAGAGAAAAGTTGCGAAATTATAAA</canonical_amplicon>
		<polymorphic_amplicon>AGAGAGTAGTGTACTGCTGTGGAGACGGTAGACACGTGGAGTGTTTCTTTTTGGCCGGGGTTGGCAACTGGCGGGAAAAAGGATGAGGAGAAGAAGAAGAAAAARAGACACCGAACGAAATATTTGATGAGAAAATTGATGAAATTATCTATGAAATAATTTCTTTTGAAAGGGATTGAGAATTTCCGAATAATCTATTTCGGAAGTCAGTATTTCAAGGGGAAGAGAAAAGTTGCGAAATTATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31813</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>43670</contig_pos>
        <strand>+</strand>
        <context>AAGAAAAARA[A/G]ACACCGAACG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGGTTGGCAACTGGCGGGAAAAAGGATGAGGAGAAGAAGAAGAAAAAAA</left_flank>
        <right_flank>ACACCGAACGAAATATTTGATGAGAAAATTGATGAAATTATCTATGAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTAGCTGGCAAATTTCCATTATCTCTTATAGGAGCCGAGATAATTGAGCTTGAAGTGCAAGTACCAACTATTATAGATATTTATGTTTAAAAATGAGAATTTCAAAGGAAGATAAAACTTATAAAATTACTCCTTTTAAGTATTCAGATGTAAGTTCAGCTCAATTATCTCGGTTCCTATACGAGATATCCAAAATATGCTTACTAGCAAAATGTTGGTGACATTAAAGCAAACATCGTATCAGTTGATAGATTTTTAATATTTCTGATAAGAGCCAAGGTAATTGAGCTCAAAGGGTAAATACCTAGAAATAAGGCAAGTAGAATCGGTCAGCCAAAACCATTGCTCATGGTTAATAGAGGTCTCCCGTATTTTTTCCTCGGTGGGGTCAAAGAGAGTAGTGTACTGCTGTGGAGACGGTAGACACGTGGAGTGTTTCTTTTTGGCCGGGGTTGGCAACTGGCGGGAAAAAGGATGAGGAGAAGAAGAAGAAAAAAAGACACCGAACGAAATATTTGATGAGAAAATTGATGAAATTATCTATGAAATAATTTCTTTTGAAAGGGATTGAGAATTTCCGAATAATCTATTTCGGAAGTCAGTATTTCAAGGGGAAGAGAAAAGTTGCGAAATTATAAATTTTTTTGTTGAAATTTCTAAAGTCCGCAATGTGGCGTACGGAACAGATACATGAGACCCTACGACGGAAAAAAGTAAAGGAGGAAGATGCCAACTAGAAAACAAACAAGAGGAGAACGATGGAAGAATTCTGGTGGCGGGAAGGAGAGAAATTTGAAAAAGAAGAGAAAAAGTCAAACTTGGGGAAATCATCTAATGGCAAAACTAGAAAAAGAGAAGAATGAAACAATCAAATTTCGAAATTCGAGAAAAATTGAAAAAATACATTTTTGGGATATTTCGAAATACCTCAAATCAAATATCGGTATTTTTAAAATTCGGAAATTTTAACTTTAAAAAAGTGAATTTTCCTTTTTTGGA</canonical>
            <polymorphic>GTTAGCTGGCAAATTTCCATTATCTCTTATAGGAGCCGAGATAATTGAGCTTGAAGTGCAAGTACCAACTATTATAGATATTTATGTTTAAAAATGAGAATTTCAAAGGAAGATAAAACTTATAAAATTACTCCTTTTAAGTATTCAGATGTAAGTTCAGCTCAATTATCTCGGTTCCTATACGAGATATCCAAAATATGCTTACTAGCAAAATGTTGGTGACATTAAAGCAAACATCGTATCAGTTGATAGATTTTTAATATTTCTGATAAGAGCCAAGGTAATTGAGCTCAAAGGGTAAATACCTAGAAATAAGGCAAGTAGAATCGGTCAGCCAAAACCATTGCTCATGGTTAATAGAGGTCTCCCGTATTTTTTCCTCGGTGGGGTCAAAGAGAGTAGTGTACTGCTGTGGAGACGGTAGACACGTGGAGTGTTTCTTTTTGGCCGGGGTTGGCAACTGGCGGGAAAAAGGATGAGGAGAAGAAGAAGAAAAAAARACACCGAACGAAATATTTGATGAGAAAATTGATGAAATTATCTATGAAATAATTTCTTTTGAAAGGGATTGAGAATTTCCGAATAATCTATTTCGGAAGTCAGTATTTCAAGGGGAAGAGAAAAGTTGCGAAATTATAAATTTTTTTGTTGAAATTTCTAAAGTCCGCAATGTGGCGTACGGAACAGATACATGAGACCCTACGACGGAAAAAAGTAAAGGAGGAAGATGCCAACTAGAAAACAAACAAGAGGAGAACGATGGAAGAATTCTGGTGGCGGGAAGGAGAGAAATTTGAAAAAGAAGAGAAAAAGTCAAACTTGGGGAAATCATCTAATGGCAAAACTAGAAAAAGAGAAGAATGAAACAATCAAATTTCGAAATTCGAGAAAAATTGAAAAAATACATTTTTGGGATATTTCGAAATACCTCAAATCAAATATCGGTATTTTTAAAATTCGGAAATTTTAACTTTAAAAAAGTGAATTTTCCTTTTTTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGAGTAGTGTACTGCTGTGGA</pcr_primer_p1>
		<pcr_primer_p2>TTTATAATTTCGCAACTTTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGAGAGTAGTGTACTGCTGTGGAGACGGTAGACACGTGGAGTGTTTCTTTTTGGCCGGGGTTGGCAACTGGCGGGAAAAAGGATGAGGAGAAGAAGAAGAAAAAAAGACACCGAACGAAATATTTGATGAGAAAATTGATGAAATTATCTATGAAATAATTTCTTTTGAAAGGGATTGAGAATTTCCGAATAATCTATTTCGGAAGTCAGTATTTCAAGGGGAAGAGAAAAGTTGCGAAATTATAAA</canonical_amplicon>
		<polymorphic_amplicon>AGAGAGTAGTGTACTGCTGTGGAGACGGTAGACACGTGGAGTGTTTCTTTTTGGCCGGGGTTGGCAACTGGCGGGAAAAAGGATGAGGAGAAGAAGAAGAAAAAAARACACCGAACGAAATATTTGATGAGAAAATTGATGAAATTATCTATGAAATAATTTCTTTTGAAAGGGATTGAGAATTTCCGAATAATCTATTTCGGAAGTCAGTATTTCAAGGGGAAGAGAAAAGTTGCGAAATTATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31814</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>43764</contig_pos>
        <strand></strand>
        <context>TAATCTATTT[C/T]GGAAGTCAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGAAATAATTTCTTTTGAAAGGGATTGAGAATTTCCGAATAATCTATTT</left_flank>
        <right_flank>GGAAGTCAGTATTTCAAGGGGAAGAGAAAAGTTGCGAAATTATAAATTTT</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGAATTTCAAAGGAAGATAAAACTTATAAAATTACTCCTTTTAAGTATTCAGATGTAAGTTCAGCTCAATTATCTCGGTTCCTATACGAGATATCCAAAATATGCTTACTAGCAAAATGTTGGTGACATTAAAGCAAACATCGTATCAGTTGATAGATTTTTAATATTTCTGATAAGAGCCAAGGTAATTGAGCTCAAAGGGTAAATACCTAGAAATAAGGCAAGTAGAATCGGTCAGCCAAAACCATTGCTCATGGTTAATAGAGGTCTCCCGTATTTTTTCCTCGGTGGGGTCAAAGAGAGTAGTGTACTGCTGTGGAGACGGTAGACACGTGGAGTGTTTCTTTTTGGCCGGGGTTGGCAACTGGCGGGAAAAAGGATGAGGAGAAGAAGAAGAAAAAAAGACACCGAACGAAATATTTGATGAGAAAATTGATGAAATTATCTATGAAATAATTTCTTTTGAAAGGGATTGAGAATTTCCGAATAATCTATTTCGGAAGTCAGTATTTCAAGGGGAAGAGAAAAGTTGCGAAATTATAAATTTTTTTGTTGAAATTTCTAAAGTCCGCAATGTGGCGTACGGAACAGATACATGAGACCCTACGACGGAAAAAAGTAAAGGAGGAAGATGCCAACTAGAAAACAAACAAGAGGAGAACGATGGAAGAATTCTGGTGGCGGGAAGGAGAGAAATTTGAAAAAGAAGAGAAAAAGTCAAACTTGGGGAAATCATCTAATGGCAAAACTAGAAAAAGAGAAGAATGAAACAATCAAATTTCGAAATTCGAGAAAAATTGAAAAAATACATTTTTGGGATATTTCGAAATACCTCAAATCAAATATCGGTATTTTTAAAATTCGGAAATTTTAACTTTAAAAAAGTGAATTTTCCTTTTTTGGAGTTAACAAAAATTCAAGAAGCTTCTCCTTATCAGTAAAACTACATTCCGTAAACCCTCTAATAGAACTTCACCCGATTCGTTAAATTTGAGCGT</canonical>
            <polymorphic>TGAGAATTTCAAAGGAAGATAAAACTTATAAAATTACTCCTTTTAAGTATTCAGATGTAAGTTCAGCTCAATTATCTCGGTTCCTATACGAGATATCCAAAATATGCTTACTAGCAAAATGTTGGTGACATTAAAGCAAACATCGTATCAGTTGATAGATTTTTAATATTTCTGATAAGAGCCAAGGTAATTGAGCTCAAAGGGTAAATACCTAGAAATAAGGCAAGTAGAATCGGTCAGCCAAAACCATTGCTCATGGTTAATAGAGGTCTCCCGTATTTTTTCCTCGGTGGGGTCAAAGAGAGTAGTGTACTGCTGTGGAGACGGTAGACACGTGGAGTGTTTCTTTTTGGCCGGGGTTGGCAACTGGCGGGAAAAAGGATGAGGAGAAGAAGAAGAAAAAAAGACACCGAACGAAATATTTGATGAGAAAATTGATGAAATTATCTATGAAATAATTTCTTTTGAAAGGGATTGAGAATTTCCGAATAATCTATTTYGGAAGTCAGTATTTCAAGGGGAAGAGAAAAGTTGCGAAATTATAAATTTTTTTGTTGAAATTTCTAAAGTCCGCAATGTGGCGTACGGAACAGATACATGAGACCCTACGACGGAAAAAAGTAAAGGAGGAAGATGCCAACTAGAAAACAAACAAGAGGAGAACGATGGAAGAATTCTGGTGGCGGGAAGGAGAGAAATTTGAAAAAGAAGAGAAAAAGTCAAACTTGGGGAAATCATCTAATGGCAAAACTAGAAAAAGAGAAGAATGAAACAATCAAATTTCGAAATTCGAGAAAAATTGAAAAAATACATTTTTGGGATATTTCGAAATACCTCAAATCAAATATCGGTATTTTTAAAATTCGGAAATTTTAACTTTAAAAAAGTGAATTTTCCTTTTTTGGAGTTAACAAAAATTCAAGAAGCTTCTCCTTATCAGTAAAACTACATTCCGTAAACCCTCTAATAGAACTTCACCCGATTCGTTAAATTTGAGCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>365 313 134 120 53 15</canonical_bands>
                <polymorphic_bands>380 313 134 120 53</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACGAAATATTTGATGAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TCCTCTTGTTTGTTTTCTAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAACGAAATATTTGATGAGAAAATTGATGAAATTATCTATGAAATAATTTCTTTTGAAAGGGATTGAGAATTTCCGAATAATCTATTTCGGAAGTCAGTATTTCAAGGGGAAGAGAAAAGTTGCGAAATTATAAATTTTTTTGTTGAAATTTCTAAAGTCCGCAATGTGGCGTACGGAACAGATACATGAGACCCTACGACGGAAAAAAGTAAAGGAGGAAGATGCCAACTAGAAAACAAACAAGAGGA</canonical_amplicon>
		<polymorphic_amplicon>GAACGAAATATTTGATGAGAAAATTGATGAAATTATCTATGAAATAATTTCTTTTGAAAGGGATTGAGAATTTCCGAATAATCTATTTYGGAAGTCAGTATTTCAAGGGGAAGAGAAAAGTTGCGAAATTATAAATTTTTTTGTTGAAATTTCTAAAGTCCGCAATGTGGCGTACGGAACAGATACATGAGACCCTACGACGGAAAAAAGTAAAGGAGGAAGATGCCAACTAGAAAACAAACAAGAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31815</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>73281</contig_pos>
        <strand>+</strand>
        <context>CGTGTAAATC[A/G]AAAAAARGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTATTCAAAAAGAAAATGGTCCATAAAATGAATAGAATTCGTGTAAATC</left_flank>
        <right_flank>AAAAAAAGAAGTTAGAAGATTGAAGGCAAAGGTAGAAAAGGTAAATGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGAAGATGATGGAGAAATTGATTGTGATTCAGGACAAATATCAAACTAAAGTTGGTGAGTATTTGTTTTTTCAAGGCTCGGCGTCATTTCGAAACCGCGACATTTCGAAACCGGTCATTTCGAAACTGCGTAACACTTTGAAACCAGGTTTTTCGTAACCAGTCATTCCGAAACTTTTTCTCGGTTTCGAAATGACCGGTTTCGAAATGACTGAATTCGAAGTGTCAAGTCGTTTCGAAATGACTGGTTTCGACGGGTCGCGGTTTCGAACTGACATTCAAATTAAATTTGAATTCTTTCAGTGCTAATGGCTTCCTCCAGCCAAGGCGTTCCAGAACCGTCATCAAGCAATCAGGCTGAAAAATCAGTCCACATGGGCCATGACATGGCACAAAAAAGGCAAATGATCGCTAAAAAGAAGTACCATAAATTGAGAAAGAATATTCGTTTATTCAAAAAGAAAATGGTCCATAAAATGAATAGAATTCGTGTAAATCAAAAAAAAGAAGTTAGAAGATTGAAGGCAAAGGTAGAAAAGGTAAATGAAGCAAAAAGAGAGGTCGAAGAGGCATGGGATGAGGGAAAAGCGAAAATGGATGGAGACGGGTATTTTGATAATTTTGGAGGCAAAAATGAACCACCGTTGGGCAATCTTATGAAAGCCATGCGTCGTGCGCAGGATTTGAACATAAAACTTCGGAAGAGAGGGGAGAAAATTATGGAAGAGCTACAGTACTTCAAAGATAGATTTAGGACAATTATGGATATTGTCGAATCGAAAAGGATTAATAAAGAGGAAAAATATAATCAGATGGTTAAGAAATTTATTGAGATTCAGGAGAAGCAGGATGGTGTTCCATCCACTTTAGGACCACAGCCTGCAAAAAAAAGTGAGTTGTTGAATTCTGAAAACGGGAAAATATGAATAATATGCAGAGAAAACGATAAATCAAGTGTTCAAGCTGGTCTCCATTCCTTCCAGAAGCTTCGTTTTTCTT</canonical>
            <polymorphic>CAAGAAGATGATGGAGAAATTGATTGTGATTCAGGACAAATATCAAACTAAAGTTGGTGAGTATTTGTTTTTTCAAGGCTCGGCGTCATTTCGAAACCGCGACATTTCGAAACCGGTCATTTCGAAACTGCGTAACACTTTGAAACCAGGTTTTTCGTAACCAGTCATTCCGAAACTTTTTCTCGGTTTCGAAATGACCGGTTTCGAAATGACTGAATTCGAAGTGTCAAGTCGTTTCGAAATGACTGGTTTCGACGGGTCGCGGTTTCGAACTGACATTCAAATTAAATTTGAATTCTTTCAGTGCTAATGGCTTCCTCCAGCCAAGGCGTTCCAGAACCGTCATCAAGCAATCAGGCTGAAAAATCAGTCCACATGGGCCATGACATGGCACAAAAAAGGCAAATGATCGCTAAAAAGAAGTACCATAAATTGAGAAAGAATATTCGTTTATTCAAAAAGAAAATGGTCCATAAAATGAATAGAATTCGTGTAAATCRAAAAAAAGAAGTTAGAAGATTGAAGGCAAAGGTAGAAAAGGTAAATGAAGCAAAAAGAGAGGTCGAAGAGGCATGGGATGAGGGAAAAGCGAAAATGGATGGAGACGGGTATTTTGATAATTTTGGAGGCAAAAATGAACCACCGTTGGGCAATCTTATGAAAGCCATGCGTCGTGCGCAGGATTTGAACATAAAACTTCGGAAGAGAGGGGAGAAAATTATGGAAGAGCTACAGTACTTCAAAGATAGATTTAGGACAATTATGGATATTGTCGAATCGAAAAGGATTAATAAAGAGGAAAAATATAATCAGATGGTTAAGAAATTTATTGAGATTCAGGAGAAGCAGGATGGTGTTCCATCCACTTTAGGACCACAGCCTGCAAAAAAAAGTGAGTTGTTGAATTCTGAAAACGGGAAAATATGAATAATATGCAGAGAAAACGATAAATCAAGTGTTCAAGCTGGTCTCCATTCCTTCCAGAAGCTTCGTTTTTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGTTTATTCAAAAAGAAAATG</pcr_primer_p1>
		<pcr_primer_p2>CGAAGTTTTATGTTCAAATCCT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TTCGTTTATTCAAAAAGAAAATGGTCCATAAAATGAATAGAATTCGTGTAAATCAAAAAAAAGAAGTTAGAAGATTGAAGGCAAAGGTAGAAAAGGTAAATGAAGCAAAAAGAGAGGTCGAAGAGGCATGGGATGAGGGAAAAGCGAAAATGGATGGAGACGGGTATTTTGATAATTTTGGAGGCAAAAATGAACCACCGTTGGGCAATCTTATGAAAGCCATGCGTCGTGCGCAGGATTTGAACATAAAACTTCG</canonical_amplicon>
		<polymorphic_amplicon>TTCGTTTATTCAAAAAGAAAATGGTCCATAAAATGAATAGAATTCGTGTAAATCRAAAAAAAGAAGTTAGAAGATTGAAGGCAAAGGTAGAAAAGGTAAATGAAGCAAAAAGAGAGGTCGAAGAGGCATGGGATGAGGGAAAAGCGAAAATGGATGGAGACGGGTATTTTGATAATTTTGGAGGCAAAAATGAACCACCGTTGGGCAATCTTATGAAAGCCATGCGTCGTGCGCAGGATTTGAACATAAAACTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31817</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>86465</contig_pos>
        <strand></strand>
        <context>ccctaactgg[G/A]aacttcaagc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATGATATGCGTTTACCGTAAAACCTGTAATAGAAAAGCCCCCTAACTGG</left_flank>
        <right_flank>AACTTCAAGCTTGTTTATGTCGGTTCCAGTCAAAATTTAAAAAAAGTTGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATACCTTTGAAGTGGACGTATAATTTTGAAACGGTTGCAAATGTCACATTTTCAGATTTTTCTCTGTATCTCGAGTAGTTTTCAATATTTTTTCTCAAAAATGGTTTTCTAGATGTAATTTGTCGCTCTGAATTCAATTTTAATAAAATTAGATTGATATCTCAACCGGTTCTCAAGTTACGGCCAAAAACAAGAGTGGACGTATAATATTGAAACGCACTGTATGTAAGGAAGTTATTTGAAAATTTGTGGAATTGGAGAAAAAAGAAAATATAGAGAAAAAAGCATAAATGAGAGAATGAGATGATTATTTAGGCTTGGGAAAAGTGAAGAAATGGAAAAAAAAAGTTTCTGAAAGGAATTTAGTTTAGTCGTCGTGGTCCTGAAGTTGATGGCACGTCCTCACGTCTATCAAGCTCATTTAGTTTTATCCTCATCTCTGAAAATGAAATGATATGCGTTTACCGTAAAACCTGTAATAGAAAAGCCCCCTAACTGGGAACTTCAAGCTTGTTTATGTCGGTTCCAGTCAAAATTTAAAAAAAGTTGTCAACTGATGAATTTTTTATCATAATATCAGAAACATTTGATACAGTTCCGATATAATCCTCAGGAACTGAGATGAATTAGCTCAAACTTGACAGCGTGCGAGCTCTTTTGTTGCAGGTTCCCAAGTAAGCAATACGAGAAAAAAAAATAAATCACTTACCATCCTCAATTTTTCGTTGTTTTCCTTCAATTTCCCGCAACTTCTCATACATTTTCTTGTATTTTTCCTCCACCCTAATCCCATTCAATTTGTCAATTCCTTCAATTTCAGCGAATACATTTTTGAAGCACCCCAACTTTCCTTCCATCACATTTCTATCCATGCGATCATTCAGATTTCCTTCCACTTCCTGTGTCTGCTCTTCTCGCTCAGCATTATCTTCTTTAGTTTTTTTCAACGAATCTAAAAGTTTTTTGAGATGATAATCTTCTCTTATTTTACGCTTCAGTT</canonical>
            <polymorphic>ATACCTTTGAAGTGGACGTATAATTTTGAAACGGTTGCAAATGTCACATTTTCAGATTTTTCTCTGTATCTCGAGTAGTTTTCAATATTTTTTCTCAAAAATGGTTTTCTAGATGTAATTTGTCGCTCTGAATTCAATTTTAATAAAATTAGATTGATATCTCAACCGGTTCTCAAGTTACGGCCAAAAACAAGAGTGGACGTATAATATTGAAACGCACTGTATGTAAGGAAGTTATTTGAAAATTTGTGGAATTGGAGAAAAAAGAAAATATAGAGAAAAAAGCATAAATGAGAGAATGAGATGATTATTTAGGCTTGGGAAAAGTGAAGAAATGGAAAAAAAAAGTTTCTGAAAGGAATTTAGTTTAGTCGTCGTGGTCCTGAAGTTGATGGCACGTCCTCACGTCTATCAAGCTCATTTAGTTTTATCCTCATCTCTGAAAATGAAATGATATGCGTTTACCGTAAAACCTGTAATAGAAAAGCCCCCTAACTGGRAACTTCAAGCTTGTTTATGTCGGTTCCAGTCAAAATTTAAAAAAAGTTGTCAACTGATGAATTTTTTATCATAATATCAGAAACATTTGATACAGTTCCGATATAATCCTCAGGAACTGAGATGAATTAGCTCAAACTTGACAGCGTGCGAGCTCTTTTGTTGCAGGTTCCCAAGTAAGCAATACGAGAAAAAAAAATAAATCACTTACCATCCTCAATTTTTCGTTGTTTTCCTTCAATTTCCCGCAACTTCTCATACATTTTCTTGTATTTTTCCTCCACCCTAATCCCATTCAATTTGTCAATTCCTTCAATTTCAGCGAATACATTTTTGAAGCACCCCAACTTTCCTTCCATCACATTTCTATCCATGCGATCATTCAGATTTCCTTCCACTTCCTGTGTCTGCTCTTCTCGCTCAGCATTATCTTCTTTAGTTTTTTTCAACGAATCTAAAAGTTTTTTGAGATGATAATCTTCTCTTATTTTACGCTTCAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCTGAAAATGAAATGATATGC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTCGTATTGCTTACTTG</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TCTCTGAAAATGAAATGATATGCGTTTACCGTAAAACCTGTAATAGAAAAGCCCCCTAACTGGGAACTTCAAGCTTGTTTATGTCGGTTCCAGTCAAAATTTAAAAAAAGTTGTCAACTGATGAATTTTTTATCATAATATCAGAAACATTTGATACAGTTCCGATATAATCCTCAGGAACTGAGATGAATTAGCTCAAACTTGACAGCGTGCGAGCTCTTTTGTTGCAGGTTCCCAAGTAAGCAATACGAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTCTGAAAATGAAATGATATGCGTTTACCGTAAAACCTGTAATAGAAAAGCCCCCTAACTGGRAACTTCAAGCTTGTTTATGTCGGTTCCAGTCAAAATTTAAAAAAAGTTGTCAACTGATGAATTTTTTATCATAATATCAGAAACATTTGATACAGTTCCGATATAATCCTCAGGAACTGAGATGAATTAGCTCAAACTTGACAGCGTGCGAGCTCTTTTGTTGCAGGTTCCCAAGTAAGCAATACGAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31818</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>86493</contig_pos>
        <strand></strand>
        <context>tgtcggttcc[A/T]gtcaaaattw</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATAGAAAAGCCCCCTAACTGGGAACTTCAAGCTTGTTTATGTCGGTTCC</left_flank>
        <right_flank>GTCAAAATTTAAAAAAAGTTGTCAACTGATGAATTTTTTATCATAATATC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACGGTTGCAAATGTCACATTTTCAGATTTTTCTCTGTATCTCGAGTAGTTTTCAATATTTTTTCTCAAAAATGGTTTTCTAGATGTAATTTGTCGCTCTGAATTCAATTTTAATAAAATTAGATTGATATCTCAACCGGTTCTCAAGTTACGGCCAAAAACAAGAGTGGACGTATAATATTGAAACGCACTGTATGTAAGGAAGTTATTTGAAAATTTGTGGAATTGGAGAAAAAAGAAAATATAGAGAAAAAAGCATAAATGAGAGAATGAGATGATTATTTAGGCTTGGGAAAAGTGAAGAAATGGAAAAAAAAAGTTTCTGAAAGGAATTTAGTTTAGTCGTCGTGGTCCTGAAGTTGATGGCACGTCCTCACGTCTATCAAGCTCATTTAGTTTTATCCTCATCTCTGAAAATGAAATGATATGCGTTTACCGTAAAACCTGTAATAGAAAAGCCCCCTAACTGGGAACTTCAAGCTTGTTTATGTCGGTTCCAGTCAAAATTTAAAAAAAGTTGTCAACTGATGAATTTTTTATCATAATATCAGAAACATTTGATACAGTTCCGATATAATCCTCAGGAACTGAGATGAATTAGCTCAAACTTGACAGCGTGCGAGCTCTTTTGTTGCAGGTTCCCAAGTAAGCAATACGAGAAAAAAAAATAAATCACTTACCATCCTCAATTTTTCGTTGTTTTCCTTCAATTTCCCGCAACTTCTCATACATTTTCTTGTATTTTTCCTCCACCCTAATCCCATTCAATTTGTCAATTCCTTCAATTTCAGCGAATACATTTTTGAAGCACCCCAACTTTCCTTCCATCACATTTCTATCCATGCGATCATTCAGATTTCCTTCCACTTCCTGTGTCTGCTCTTCTCGCTCAGCATTATCTTCTTTAGTTTTTTTCAACGAATCTAAAAGTTTTTTGAGATGATAATCTTCTCTTATTTTACGCTTCAGTTCCTGAACGAGTTTAATACTTGTACCATT</canonical>
            <polymorphic>AAACGGTTGCAAATGTCACATTTTCAGATTTTTCTCTGTATCTCGAGTAGTTTTCAATATTTTTTCTCAAAAATGGTTTTCTAGATGTAATTTGTCGCTCTGAATTCAATTTTAATAAAATTAGATTGATATCTCAACCGGTTCTCAAGTTACGGCCAAAAACAAGAGTGGACGTATAATATTGAAACGCACTGTATGTAAGGAAGTTATTTGAAAATTTGTGGAATTGGAGAAAAAAGAAAATATAGAGAAAAAAGCATAAATGAGAGAATGAGATGATTATTTAGGCTTGGGAAAAGTGAAGAAATGGAAAAAAAAAGTTTCTGAAAGGAATTTAGTTTAGTCGTCGTGGTCCTGAAGTTGATGGCACGTCCTCACGTCTATCAAGCTCATTTAGTTTTATCCTCATCTCTGAAAATGAAATGATATGCGTTTACCGTAAAACCTGTAATAGAAAAGCCCCCTAACTGGGAACTTCAAGCTTGTTTATGTCGGTTCCWGTCAAAATTTAAAAAAAGTTGTCAACTGATGAATTTTTTATCATAATATCAGAAACATTTGATACAGTTCCGATATAATCCTCAGGAACTGAGATGAATTAGCTCAAACTTGACAGCGTGCGAGCTCTTTTGTTGCAGGTTCCCAAGTAAGCAATACGAGAAAAAAAAATAAATCACTTACCATCCTCAATTTTTCGTTGTTTTCCTTCAATTTCCCGCAACTTCTCATACATTTTCTTGTATTTTTCCTCCACCCTAATCCCATTCAATTTGTCAATTCCTTCAATTTCAGCGAATACATTTTTGAAGCACCCCAACTTTCCTTCCATCACATTTCTATCCATGCGATCATTCAGATTTCCTTCCACTTCCTGTGTCTGCTCTTCTCGCTCAGCATTATCTTCTTTAGTTTTTTTCAACGAATCTAAAAGTTTTTTGAGATGATAATCTTCTCTTATTTTACGCTTCAGTTCCTGAACGAGTTTAATACTTGTACCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCTGAAAATGAAATGATATGC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTCGTATTGCTTACTTG</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TCTCTGAAAATGAAATGATATGCGTTTACCGTAAAACCTGTAATAGAAAAGCCCCCTAACTGGGAACTTCAAGCTTGTTTATGTCGGTTCCAGTCAAAATTTAAAAAAAGTTGTCAACTGATGAATTTTTTATCATAATATCAGAAACATTTGATACAGTTCCGATATAATCCTCAGGAACTGAGATGAATTAGCTCAAACTTGACAGCGTGCGAGCTCTTTTGTTGCAGGTTCCCAAGTAAGCAATACGAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTCTGAAAATGAAATGATATGCGTTTACCGTAAAACCTGTAATAGAAAAGCCCCCTAACTGGGAACTTCAAGCTTGTTTATGTCGGTTCCWGTCAAAATTTAAAAAAAGTTGTCAACTGATGAATTTTTTATCATAATATCAGAAACATTTGATACAGTTCCGATATAATCCTCAGGAACTGAGATGAATTAGCTCAAACTTGACAGCGTGCGAGCTCTTTTGTTGCAGGTTCCCAAGTAAGCAATACGAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31819</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>86503</contig_pos>
        <strand></strand>
        <context>wgtcaaaatt[T/A]maaaaaagtt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CCCCCTAACTGGGAACTTCAAGCTTGTTTATGTCGGTTCCAGTCAAAATT</left_flank>
        <right_flank>AAAAAAAGTTGTCAACTGATGAATTTTTTATCATAATATCAGAAACATTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATGTCACATTTTCAGATTTTTCTCTGTATCTCGAGTAGTTTTCAATATTTTTTCTCAAAAATGGTTTTCTAGATGTAATTTGTCGCTCTGAATTCAATTTTAATAAAATTAGATTGATATCTCAACCGGTTCTCAAGTTACGGCCAAAAACAAGAGTGGACGTATAATATTGAAACGCACTGTATGTAAGGAAGTTATTTGAAAATTTGTGGAATTGGAGAAAAAAGAAAATATAGAGAAAAAAGCATAAATGAGAGAATGAGATGATTATTTAGGCTTGGGAAAAGTGAAGAAATGGAAAAAAAAAGTTTCTGAAAGGAATTTAGTTTAGTCGTCGTGGTCCTGAAGTTGATGGCACGTCCTCACGTCTATCAAGCTCATTTAGTTTTATCCTCATCTCTGAAAATGAAATGATATGCGTTTACCGTAAAACCTGTAATAGAAAAGCCCCCTAACTGGGAACTTCAAGCTTGTTTATGTCGGTTCCAGTCAAAATTTAAAAAAAGTTGTCAACTGATGAATTTTTTATCATAATATCAGAAACATTTGATACAGTTCCGATATAATCCTCAGGAACTGAGATGAATTAGCTCAAACTTGACAGCGTGCGAGCTCTTTTGTTGCAGGTTCCCAAGTAAGCAATACGAGAAAAAAAAATAAATCACTTACCATCCTCAATTTTTCGTTGTTTTCCTTCAATTTCCCGCAACTTCTCATACATTTTCTTGTATTTTTCCTCCACCCTAATCCCATTCAATTTGTCAATTCCTTCAATTTCAGCGAATACATTTTTGAAGCACCCCAACTTTCCTTCCATCACATTTCTATCCATGCGATCATTCAGATTTCCTTCCACTTCCTGTGTCTGCTCTTCTCGCTCAGCATTATCTTCTTTAGTTTTTTTCAACGAATCTAAAAGTTTTTTGAGATGATAATCTTCTCTTATTTTACGCTTCAGTTCCTGAACGAGTTTAATACTTGTACCATTGTCTTCATGT</canonical>
            <polymorphic>AAATGTCACATTTTCAGATTTTTCTCTGTATCTCGAGTAGTTTTCAATATTTTTTCTCAAAAATGGTTTTCTAGATGTAATTTGTCGCTCTGAATTCAATTTTAATAAAATTAGATTGATATCTCAACCGGTTCTCAAGTTACGGCCAAAAACAAGAGTGGACGTATAATATTGAAACGCACTGTATGTAAGGAAGTTATTTGAAAATTTGTGGAATTGGAGAAAAAAGAAAATATAGAGAAAAAAGCATAAATGAGAGAATGAGATGATTATTTAGGCTTGGGAAAAGTGAAGAAATGGAAAAAAAAAGTTTCTGAAAGGAATTTAGTTTAGTCGTCGTGGTCCTGAAGTTGATGGCACGTCCTCACGTCTATCAAGCTCATTTAGTTTTATCCTCATCTCTGAAAATGAAATGATATGCGTTTACCGTAAAACCTGTAATAGAAAAGCCCCCTAACTGGGAACTTCAAGCTTGTTTATGTCGGTTCCAGTCAAAATTWAAAAAAAGTTGTCAACTGATGAATTTTTTATCATAATATCAGAAACATTTGATACAGTTCCGATATAATCCTCAGGAACTGAGATGAATTAGCTCAAACTTGACAGCGTGCGAGCTCTTTTGTTGCAGGTTCCCAAGTAAGCAATACGAGAAAAAAAAATAAATCACTTACCATCCTCAATTTTTCGTTGTTTTCCTTCAATTTCCCGCAACTTCTCATACATTTTCTTGTATTTTTCCTCCACCCTAATCCCATTCAATTTGTCAATTCCTTCAATTTCAGCGAATACATTTTTGAAGCACCCCAACTTTCCTTCCATCACATTTCTATCCATGCGATCATTCAGATTTCCTTCCACTTCCTGTGTCTGCTCTTCTCGCTCAGCATTATCTTCTTTAGTTTTTTTCAACGAATCTAAAAGTTTTTTGAGATGATAATCTTCTCTTATTTTACGCTTCAGTTCCTGAACGAGTTTAATACTTGTACCATTGTCTTCATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>479 174 116 113 92 26</canonical_bands>
                <polymorphic_bands>479 200 116 113 92</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>475 397 102 26</canonical_bands>
                <polymorphic_bands>872 102 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCTGAAAATGAAATGATATGC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTCGTATTGCTTACTTG</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TCTCTGAAAATGAAATGATATGCGTTTACCGTAAAACCTGTAATAGAAAAGCCCCCTAACTGGGAACTTCAAGCTTGTTTATGTCGGTTCCAGTCAAAATTTAAAAAAAGTTGTCAACTGATGAATTTTTTATCATAATATCAGAAACATTTGATACAGTTCCGATATAATCCTCAGGAACTGAGATGAATTAGCTCAAACTTGACAGCGTGCGAGCTCTTTTGTTGCAGGTTCCCAAGTAAGCAATACGAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTCTGAAAATGAAATGATATGCGTTTACCGTAAAACCTGTAATAGAAAAGCCCCCTAACTGGGAACTTCAAGCTTGTTTATGTCGGTTCCAGTCAAAATTWAAAAAAAGTTGTCAACTGATGAATTTTTTATCATAATATCAGAAACATTTGATACAGTTCCGATATAATCCTCAGGAACTGAGATGAATTAGCTCAAACTTGACAGCGTGCGAGCTCTTTTGTTGCAGGTTCCCAAGTAAGCAATACGAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31820</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>86504</contig_pos>
        <strand></strand>
        <context>gtcaaaattw[A/C]aaaaaagttg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCCCTAACTGGGAACTTCAAGCTTGTTTATGTCGGTTCCAGTCAAAATTT</left_flank>
        <right_flank>AAAAAAGTTGTCAACTGATGAATTTTTTATCATAATATCAGAAACATTTG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGTCACATTTTCAGATTTTTCTCTGTATCTCGAGTAGTTTTCAATATTTTTTCTCAAAAATGGTTTTCTAGATGTAATTTGTCGCTCTGAATTCAATTTTAATAAAATTAGATTGATATCTCAACCGGTTCTCAAGTTACGGCCAAAAACAAGAGTGGACGTATAATATTGAAACGCACTGTATGTAAGGAAGTTATTTGAAAATTTGTGGAATTGGAGAAAAAAGAAAATATAGAGAAAAAAGCATAAATGAGAGAATGAGATGATTATTTAGGCTTGGGAAAAGTGAAGAAATGGAAAAAAAAAGTTTCTGAAAGGAATTTAGTTTAGTCGTCGTGGTCCTGAAGTTGATGGCACGTCCTCACGTCTATCAAGCTCATTTAGTTTTATCCTCATCTCTGAAAATGAAATGATATGCGTTTACCGTAAAACCTGTAATAGAAAAGCCCCCTAACTGGGAACTTCAAGCTTGTTTATGTCGGTTCCAGTCAAAATTTAAAAAAAGTTGTCAACTGATGAATTTTTTATCATAATATCAGAAACATTTGATACAGTTCCGATATAATCCTCAGGAACTGAGATGAATTAGCTCAAACTTGACAGCGTGCGAGCTCTTTTGTTGCAGGTTCCCAAGTAAGCAATACGAGAAAAAAAAATAAATCACTTACCATCCTCAATTTTTCGTTGTTTTCCTTCAATTTCCCGCAACTTCTCATACATTTTCTTGTATTTTTCCTCCACCCTAATCCCATTCAATTTGTCAATTCCTTCAATTTCAGCGAATACATTTTTGAAGCACCCCAACTTTCCTTCCATCACATTTCTATCCATGCGATCATTCAGATTTCCTTCCACTTCCTGTGTCTGCTCTTCTCGCTCAGCATTATCTTCTTTAGTTTTTTTCAACGAATCTAAAAGTTTTTTGAGATGATAATCTTCTCTTATTTTACGCTTCAGTTCCTGAACGAGTTTAATACTTGTACCATTGTCTTCATGTT</canonical>
            <polymorphic>AATGTCACATTTTCAGATTTTTCTCTGTATCTCGAGTAGTTTTCAATATTTTTTCTCAAAAATGGTTTTCTAGATGTAATTTGTCGCTCTGAATTCAATTTTAATAAAATTAGATTGATATCTCAACCGGTTCTCAAGTTACGGCCAAAAACAAGAGTGGACGTATAATATTGAAACGCACTGTATGTAAGGAAGTTATTTGAAAATTTGTGGAATTGGAGAAAAAAGAAAATATAGAGAAAAAAGCATAAATGAGAGAATGAGATGATTATTTAGGCTTGGGAAAAGTGAAGAAATGGAAAAAAAAAGTTTCTGAAAGGAATTTAGTTTAGTCGTCGTGGTCCTGAAGTTGATGGCACGTCCTCACGTCTATCAAGCTCATTTAGTTTTATCCTCATCTCTGAAAATGAAATGATATGCGTTTACCGTAAAACCTGTAATAGAAAAGCCCCCTAACTGGGAACTTCAAGCTTGTTTATGTCGGTTCCAGTCAAAATTTMAAAAAAGTTGTCAACTGATGAATTTTTTATCATAATATCAGAAACATTTGATACAGTTCCGATATAATCCTCAGGAACTGAGATGAATTAGCTCAAACTTGACAGCGTGCGAGCTCTTTTGTTGCAGGTTCCCAAGTAAGCAATACGAGAAAAAAAAATAAATCACTTACCATCCTCAATTTTTCGTTGTTTTCCTTCAATTTCCCGCAACTTCTCATACATTTTCTTGTATTTTTCCTCCACCCTAATCCCATTCAATTTGTCAATTCCTTCAATTTCAGCGAATACATTTTTGAAGCACCCCAACTTTCCTTCCATCACATTTCTATCCATGCGATCATTCAGATTTCCTTCCACTTCCTGTGTCTGCTCTTCTCGCTCAGCATTATCTTCTTTAGTTTTTTTCAACGAATCTAAAAGTTTTTTGAGATGATAATCTTCTCTTATTTTACGCTTCAGTTCCTGAACGAGTTTAATACTTGTACCATTGTCTTCATGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>475 397 101 27</canonical_bands>
                <polymorphic_bands>872 101 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCTGAAAATGAAATGATATGC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTCGTATTGCTTACTTG</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TCTCTGAAAATGAAATGATATGCGTTTACCGTAAAACCTGTAATAGAAAAGCCCCCTAACTGGGAACTTCAAGCTTGTTTATGTCGGTTCCAGTCAAAATTTAAAAAAAGTTGTCAACTGATGAATTTTTTATCATAATATCAGAAACATTTGATACAGTTCCGATATAATCCTCAGGAACTGAGATGAATTAGCTCAAACTTGACAGCGTGCGAGCTCTTTTGTTGCAGGTTCCCAAGTAAGCAATACGAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTCTGAAAATGAAATGATATGCGTTTACCGTAAAACCTGTAATAGAAAAGCCCCCTAACTGGGAACTTCAAGCTTGTTTATGTCGGTTCCAGTCAAAATTTMAAAAAAGTTGTCAACTGATGAATTTTTTATCATAATATCAGAAACATTTGATACAGTTCCGATATAATCCTCAGGAACTGAGATGAATTAGCTCAAACTTGACAGCGTGCGAGCTCTTTTGTTGCAGGTTCCCAAGTAAGCAATACGAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31821</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>125540</contig_pos>
        <strand></strand>
        <context>AAGATTTATT[G/A]ATAGAGCATA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTACTGTTCACAATGTCTAATCTCTGCTCTCATCTAATCAAGATTTATT</left_flank>
        <right_flank>ATAGAGCATACAAAATTTGAAATTTAGAAAAAAGGAACATAGGAAAAAAT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACACGCTTCCAGAAATTCAATGGCTGTTGCAACAATAAGTCTCGGTTCTTCTCCTCGAGCCCCTCGATCGTTTTCTGCTGCTCCACAATCTTGGCCATGAACGGCTGGACCATAGCAGCATAGAGCATCGGGGTGAGGACAGGGCCTTGAAGATCTAAAATTTTCAATTTTTAAATTAATTTCTTTCTGTCGGAAGTTTACCGTTATTGAAGATGGGTTGAGCTTCGGGTTGAGCGTCAGGTTGAGCTTGGTTATCTTCGACGAACTCAACGTCTTCTGAATCCATCTGAAGTGCTTGTGGATTGCTCATAATGGTCCTAAAATGATAGTTCTGGAATAAAAAAGCGTAATTCTGCGCAAAAATTCTATGCAACGAGAAATAGTCCACATGACTTTGCAGCTATTCGAGTTCTATGTCTCAATTTCTCTCAGTCTCCTATCTCTCACTTTACTGTTCACAATGTCTAATCTCTGCTCTCATCTAATCAAGATTTATTGATAGAGCATACAAAATTTGAAATTTAGAAAAAAGGAACATAGGAAAAAATTTAGCGACGTTGATAAGATCGAAGGGGTTGAAAATCATCAGCGAGACGAATGATAATAAAAAAGGAATTTCGAAATACAATGAAATTTGGGGGAGGAGCAGACAGTGTGGCAAAAAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATCAATCGTTCCCCTGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCCCTCAATAAGTCCGTTCGATTCATATGATTTCGGTATTAGTCTGCTGAAAATTAATGAAAGTATTACGAAAAAAAAATTGAAATGACCCACTCAATGAACGGAACGAATCCCGACCCCGATTTTTGATGAAAAACAGCTGGCGAATTTTGATCGGAACTCGTCGGACGATCTGAGGAACTTGATGACGGC</canonical>
            <polymorphic>CAACACGCTTCCAGAAATTCAATGGCTGTTGCAACAATAAGTCTCGGTTCTTCTCCTCGAGCCCCTCGATCGTTTTCTGCTGCTCCACAATCTTGGCCATGAACGGCTGGACCATAGCAGCATAGAGCATCGGGGTGAGGACAGGGCCTTGAAGATCTAAAATTTTCAATTTTTAAATTAATTTCTTTCTGTCGGAAGTTTACCGTTATTGAAGATGGGTTGAGCTTCGGGTTGAGCGTCAGGTTGAGCTTGGTTATCTTCGACGAACTCAACGTCTTCTGAATCCATCTGAAGTGCTTGTGGATTGCTCATAATGGTCCTAAAATGATAGTTCTGGAATAAAAAAGCGTAATTCTGCGCAAAAATTCTATGCAACGAGAAATAGTCCACATGACTTTGCAGCTATTCGAGTTCTATGTCTCAATTTCTCTCAGTCTCCTATCTCTCACTTTACTGTTCACAATGTCTAATCTCTGCTCTCATCTAATCAAGATTTATTRATAGAGCATACAAAATTTGAAATTTAGAAAAAAGGAACATAGGAAAAAATTTAGCGACGTTGATAAGATCGAAGGGGTTGAAAATCATCAGCGAGACGAATGATAATAAAAAAGGAATTTCGAAATACAATGAAATTTGGGGGAGGAGCAGACAGTGTGGCAAAAAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATCAATCGTTCCCCTGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCCCTCAATAAGTCCGTTCGATTCATATGATTTCGGTATTAGTCTGCTGAAAATTAATGAAAGTATTACGAAAAAAAAATTGAAATGACCCACTCAATGAACGGAACGAATCCCGACCCCGATTTTTGATGAAAAACAGCTGGCGAATTTTGATCGGAACTCGTCGGACGATCTGAGGAACTTGATGACGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCTATTCGAGTTCTATGTCTC</pcr_primer_p1>
		<pcr_primer_p2>CCCCAAATTTCATTGTATTTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CAGCTATTCGAGTTCTATGTCTCAATTTCTCTCAGTCTCCTATCTCTCACTTTACTGTTCACAATGTCTAATCTCTGCTCTCATCTAATCAAGATTTATTGATAGAGCATACAAAATTTGAAATTTAGAAAAAAGGAACATAGGAAAAAATTTAGCGACGTTGATAAGATCGAAGGGGTTGAAAATCATCAGCGAGACGAATGATAATAAAAAAGGAATTTCGAAATACAATGAAATTTGGGG</canonical_amplicon>
		<polymorphic_amplicon>CAGCTATTCGAGTTCTATGTCTCAATTTCTCTCAGTCTCCTATCTCTCACTTTACTGTTCACAATGTCTAATCTCTGCTCTCATCTAATCAAGATTTATTRATAGAGCATACAAAATTTGAAATTTAGAAAAAAGGAACATAGGAAAAAATTTAGCGACGTTGATAAGATCGAAGGGGTTGAAAATCATCAGCGAGACGAATGATAATAAAAAAGGAATTTCGAAATACAATGAAATTTGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31822</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>125644</contig_pos>
        <strand></strand>
        <context>AGACGAATGA[T/C]AATAAAAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCGACGTTGATAAGATCGAAGGGGTTGAAAATCATCAGCGAGACGAATGA</left_flank>
        <right_flank>AATAAAAAAGGAATTTCGAAATACAATGAAATTTGGGGGAGGAGCAGACA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTGGACCATAGCAGCATAGAGCATCGGGGTGAGGACAGGGCCTTGAAGATCTAAAATTTTCAATTTTTAAATTAATTTCTTTCTGTCGGAAGTTTACCGTTATTGAAGATGGGTTGAGCTTCGGGTTGAGCGTCAGGTTGAGCTTGGTTATCTTCGACGAACTCAACGTCTTCTGAATCCATCTGAAGTGCTTGTGGATTGCTCATAATGGTCCTAAAATGATAGTTCTGGAATAAAAAAGCGTAATTCTGCGCAAAAATTCTATGCAACGAGAAATAGTCCACATGACTTTGCAGCTATTCGAGTTCTATGTCTCAATTTCTCTCAGTCTCCTATCTCTCACTTTACTGTTCACAATGTCTAATCTCTGCTCTCATCTAATCAAGATTTATTGATAGAGCATACAAAATTTGAAATTTAGAAAAAAGGAACATAGGAAAAAATTTAGCGACGTTGATAAGATCGAAGGGGTTGAAAATCATCAGCGAGACGAATGATAATAAAAAAGGAATTTCGAAATACAATGAAATTTGGGGGAGGAGCAGACAGTGTGGCAAAAAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATCAATCGTTCCCCTGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCCCTCAATAAGTCCGTTCGATTCATATGATTTCGGTATTAGTCTGCTGAAAATTAATGAAAGTATTACGAAAAAAAAATTGAAATGACCCACTCAATGAACGGAACGAATCCCGACCCCGATTTTTGATGAAAAACAGCTGGCGAATTTTGATCGGAACTCGTCGGACGATCTGAGGAACTTGATGACGGCTGTCCGGGTGGAAGAGGTACTCTTTGAGATCTAAAAAGGATAATGCTTGAGAGCCAAAGGTAAATATGTAGTTTACCGATCTCATCAATAGTTTGATCTCTACC</canonical>
            <polymorphic>GGCTGGACCATAGCAGCATAGAGCATCGGGGTGAGGACAGGGCCTTGAAGATCTAAAATTTTCAATTTTTAAATTAATTTCTTTCTGTCGGAAGTTTACCGTTATTGAAGATGGGTTGAGCTTCGGGTTGAGCGTCAGGTTGAGCTTGGTTATCTTCGACGAACTCAACGTCTTCTGAATCCATCTGAAGTGCTTGTGGATTGCTCATAATGGTCCTAAAATGATAGTTCTGGAATAAAAAAGCGTAATTCTGCGCAAAAATTCTATGCAACGAGAAATAGTCCACATGACTTTGCAGCTATTCGAGTTCTATGTCTCAATTTCTCTCAGTCTCCTATCTCTCACTTTACTGTTCACAATGTCTAATCTCTGCTCTCATCTAATCAAGATTTATTGATAGAGCATACAAAATTTGAAATTTAGAAAAAAGGAACATAGGAAAAAATTTAGCGACGTTGATAAGATCGAAGGGGTTGAAAATCATCAGCGAGACGAATGAYAATAAAAAAGGAATTTCGAAATACAATGAAATTTGGGGGAGGAGCAGACAGTGTGGCAAAAAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATCAATCGTTCCCCTGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCCCTCAATAAGTCCGTTCGATTCATATGATTTCGGTATTAGTCTGCTGAAAATTAATGAAAGTATTACGAAAAAAAAATTGAAATGACCCACTCAATGAACGGAACGAATCCCGACCCCGATTTTTGATGAAAAACAGCTGGCGAATTTTGATCGGAACTCGTCGGACGATCTGAGGAACTTGATGACGGCTGTCCGGGTGGAAGAGGTACTCTTTGAGATCTAAAAAGGATAATGCTTGAGAGCCAAAGGTAAATATGTAGTTTACCGATCTCATCAATAGTTTGATCTCTACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATGTCTAATCTCTGCTCTCAT</pcr_primer_p1>
		<pcr_primer_p2>CATTTAGTTTTCTCCCTTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAATGTCTAATCTCTGCTCTCATCTAATCAAGATTTATTGATAGAGCATACAAAATTTGAAATTTAGAAAAAAGGAACATAGGAAAAAATTTAGCGACGTTGATAAGATCGAAGGGGTTGAAAATCATCAGCGAGACGAATGATAATAAAAAAGGAATTTCGAAATACAATGAAATTTGGGGGAGGAGCAGACAGTGTGGCAAAAAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATG</canonical_amplicon>
		<polymorphic_amplicon>CAATGTCTAATCTCTGCTCTCATCTAATCAAGATTTATTGATAGAGCATACAAAATTTGAAATTTAGAAAAAAGGAACATAGGAAAAAATTTAGCGACGTTGATAAGATCGAAGGGGTTGAAAATCATCAGCGAGACGAATGAYAATAAAAAAGGAATTTCGAAATACAATGAAATTTGGGGGAGGAGCAGACAGTGTGGCAAAAAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31823</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>125687</contig_pos>
        <strand></strand>
        <context>TTGGGGGAGG[A/C]GCAGACAGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGAATGATAATAAAAAAGGAATTTCGAAATACAATGAAATTTGGGGGAGG</left_flank>
        <right_flank>GCAGACAGTGTGGCAAAAAAAATCAAATCGGAAATTGCAAAAAGAAGGGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGAAGATCTAAAATTTTCAATTTTTAAATTAATTTCTTTCTGTCGGAAGTTTACCGTTATTGAAGATGGGTTGAGCTTCGGGTTGAGCGTCAGGTTGAGCTTGGTTATCTTCGACGAACTCAACGTCTTCTGAATCCATCTGAAGTGCTTGTGGATTGCTCATAATGGTCCTAAAATGATAGTTCTGGAATAAAAAAGCGTAATTCTGCGCAAAAATTCTATGCAACGAGAAATAGTCCACATGACTTTGCAGCTATTCGAGTTCTATGTCTCAATTTCTCTCAGTCTCCTATCTCTCACTTTACTGTTCACAATGTCTAATCTCTGCTCTCATCTAATCAAGATTTATTGATAGAGCATACAAAATTTGAAATTTAGAAAAAAGGAACATAGGAAAAAATTTAGCGACGTTGATAAGATCGAAGGGGTTGAAAATCATCAGCGAGACGAATGATAATAAAAAAGGAATTTCGAAATACAATGAAATTTGGGGGAGGAGCAGACAGTGTGGCAAAAAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATCAATCGTTCCCCTGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCCCTCAATAAGTCCGTTCGATTCATATGATTTCGGTATTAGTCTGCTGAAAATTAATGAAAGTATTACGAAAAAAAAATTGAAATGACCCACTCAATGAACGGAACGAATCCCGACCCCGATTTTTGATGAAAAACAGCTGGCGAATTTTGATCGGAACTCGTCGGACGATCTGAGGAACTTGATGACGGCTGTCCGGGTGGAAGAGGTACTCTTTGAGATCTAAAAAGGATAATGCTTGAGAGCCAAAGGTAAATATGTAGTTTACCGATCTCATCAATAGTTTGATCTCTACCGTTTCAGTTGTTCCAGTATTCAAGAACGTCTTCGAAAGAGCCG</canonical>
            <polymorphic>CTTGAAGATCTAAAATTTTCAATTTTTAAATTAATTTCTTTCTGTCGGAAGTTTACCGTTATTGAAGATGGGTTGAGCTTCGGGTTGAGCGTCAGGTTGAGCTTGGTTATCTTCGACGAACTCAACGTCTTCTGAATCCATCTGAAGTGCTTGTGGATTGCTCATAATGGTCCTAAAATGATAGTTCTGGAATAAAAAAGCGTAATTCTGCGCAAAAATTCTATGCAACGAGAAATAGTCCACATGACTTTGCAGCTATTCGAGTTCTATGTCTCAATTTCTCTCAGTCTCCTATCTCTCACTTTACTGTTCACAATGTCTAATCTCTGCTCTCATCTAATCAAGATTTATTGATAGAGCATACAAAATTTGAAATTTAGAAAAAAGGAACATAGGAAAAAATTTAGCGACGTTGATAAGATCGAAGGGGTTGAAAATCATCAGCGAGACGAATGATAATAAAAAAGGAATTTCGAAATACAATGAAATTTGGGGGAGGMGCAGACAGTGTGGCAAAAAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATCAATCGTTCCCCTGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCCCTCAATAAGTCCGTTCGATTCATATGATTTCGGTATTAGTCTGCTGAAAATTAATGAAAGTATTACGAAAAAAAAATTGAAATGACCCACTCAATGAACGGAACGAATCCCGACCCCGATTTTTGATGAAAAACAGCTGGCGAATTTTGATCGGAACTCGTCGGACGATCTGAGGAACTTGATGACGGCTGTCCGGGTGGAAGAGGTACTCTTTGAGATCTAAAAAGGATAATGCTTGAGAGCCAAAGGTAAATATGTAGTTTACCGATCTCATCAATAGTTTGATCTCTACCGTTTCAGTTGTTCCAGTATTCAAGAACGTCTTCGAAAGAGCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATGTCTAATCTCTGCTCTCAT</pcr_primer_p1>
		<pcr_primer_p2>CATTTAGTTTTCTCCCTTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAATGTCTAATCTCTGCTCTCATCTAATCAAGATTTATTGATAGAGCATACAAAATTTGAAATTTAGAAAAAAGGAACATAGGAAAAAATTTAGCGACGTTGATAAGATCGAAGGGGTTGAAAATCATCAGCGAGACGAATGATAATAAAAAAGGAATTTCGAAATACAATGAAATTTGGGGGAGGAGCAGACAGTGTGGCAAAAAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATG</canonical_amplicon>
		<polymorphic_amplicon>CAATGTCTAATCTCTGCTCTCATCTAATCAAGATTTATTGATAGAGCATACAAAATTTGAAATTTAGAAAAAAGGAACATAGGAAAAAATTTAGCGACGTTGATAAGATCGAAGGGGTTGAAAATCATCAGCGAGACGAATGATAATAAAAAAGGAATTTCGAAATACAATGAAATTTGGGGGAGGMGCAGACAGTGTGGCAAAAAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31824</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>125796</contig_pos>
        <strand></strand>
        <context>TCTCGAATAT[C/T]AATCRTTCCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATAT</left_flank>
        <right_flank>AATCGTTCCCCTGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCGACGAACTCAACGTCTTCTGAATCCATCTGAAGTGCTTGTGGATTGCTCATAATGGTCCTAAAATGATAGTTCTGGAATAAAAAAGCGTAATTCTGCGCAAAAATTCTATGCAACGAGAAATAGTCCACATGACTTTGCAGCTATTCGAGTTCTATGTCTCAATTTCTCTCAGTCTCCTATCTCTCACTTTACTGTTCACAATGTCTAATCTCTGCTCTCATCTAATCAAGATTTATTGATAGAGCATACAAAATTTGAAATTTAGAAAAAAGGAACATAGGAAAAAATTTAGCGACGTTGATAAGATCGAAGGGGTTGAAAATCATCAGCGAGACGAATGATAATAAAAAAGGAATTTCGAAATACAATGAAATTTGGGGGAGGAGCAGACAGTGTGGCAAAAAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATCAATCGTTCCCCTGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCCCTCAATAAGTCCGTTCGATTCATATGATTTCGGTATTAGTCTGCTGAAAATTAATGAAAGTATTACGAAAAAAAAATTGAAATGACCCACTCAATGAACGGAACGAATCCCGACCCCGATTTTTGATGAAAAACAGCTGGCGAATTTTGATCGGAACTCGTCGGACGATCTGAGGAACTTGATGACGGCTGTCCGGGTGGAAGAGGTACTCTTTGAGATCTAAAAAGGATAATGCTTGAGAGCCAAAGGTAAATATGTAGTTTACCGATCTCATCAATAGTTTGATCTCTACCGTTTCAGTTGTTCCAGTATTCAAGAACGTCTTCGAAAGAGCCGACTGATCTTGGTGCATTTGAAGAAGCTGGCTCACAATGAGCGAGTGGTGGAGGTGCTGGCGTAGTCGGTGCTGAAAATAATCATTTTTAGCATAACTCAACTTGCAAAA</canonical>
            <polymorphic>TCTTCGACGAACTCAACGTCTTCTGAATCCATCTGAAGTGCTTGTGGATTGCTCATAATGGTCCTAAAATGATAGTTCTGGAATAAAAAAGCGTAATTCTGCGCAAAAATTCTATGCAACGAGAAATAGTCCACATGACTTTGCAGCTATTCGAGTTCTATGTCTCAATTTCTCTCAGTCTCCTATCTCTCACTTTACTGTTCACAATGTCTAATCTCTGCTCTCATCTAATCAAGATTTATTGATAGAGCATACAAAATTTGAAATTTAGAAAAAAGGAACATAGGAAAAAATTTAGCGACGTTGATAAGATCGAAGGGGTTGAAAATCATCAGCGAGACGAATGATAATAAAAAAGGAATTTCGAAATACAATGAAATTTGGGGGAGGAGCAGACAGTGTGGCAAAAAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATYAATCGTTCCCCTGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCCCTCAATAAGTCCGTTCGATTCATATGATTTCGGTATTAGTCTGCTGAAAATTAATGAAAGTATTACGAAAAAAAAATTGAAATGACCCACTCAATGAACGGAACGAATCCCGACCCCGATTTTTGATGAAAAACAGCTGGCGAATTTTGATCGGAACTCGTCGGACGATCTGAGGAACTTGATGACGGCTGTCCGGGTGGAAGAGGTACTCTTTGAGATCTAAAAAGGATAATGCTTGAGAGCCAAAGGTAAATATGTAGTTTACCGATCTCATCAATAGTTTGATCTCTACCGTTTCAGTTGTTCCAGTATTCAAGAACGTCTTCGAAAGAGCCGACTGATCTTGGTGCATTTGAAGAAGCTGGCTCACAATGAGCGAGTGGTGGAGGTGCTGGCGTAGTCGGTGCTGAAAATAATCATTTTTAGCATAACTCAACTTGCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAGATCGAAGGGGTTGAA</pcr_primer_p1>
		<pcr_primer_p2>GAGCTCCTTTTCATCAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATAAGATCGAAGGGGTTGAAAATCATCAGCGAGACGAATGATAATAAAAAAGGAATTTCGAAATACAATGAAATTTGGGGGAGGAGCAGACAGTGTGGCAAAAAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATCAATCGTTCCCCTGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTC</canonical_amplicon>
		<polymorphic_amplicon>ATAAGATCGAAGGGGTTGAAAATCATCAGCGAGACGAATGATAATAAAAAAGGAATTTCGAAATACAATGAAATTTGGGGGAGGAGCAGACAGTGTGGCAAAAAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATYAATCGTTCCCCTGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31825</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>125801</contig_pos>
        <strand></strand>
        <context>AATATYAATC[G/A]TTCCCCTGGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATCAATC</left_flank>
        <right_flank>TTCCCCTGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGAACTCAACGTCTTCTGAATCCATCTGAAGTGCTTGTGGATTGCTCATAATGGTCCTAAAATGATAGTTCTGGAATAAAAAAGCGTAATTCTGCGCAAAAATTCTATGCAACGAGAAATAGTCCACATGACTTTGCAGCTATTCGAGTTCTATGTCTCAATTTCTCTCAGTCTCCTATCTCTCACTTTACTGTTCACAATGTCTAATCTCTGCTCTCATCTAATCAAGATTTATTGATAGAGCATACAAAATTTGAAATTTAGAAAAAAGGAACATAGGAAAAAATTTAGCGACGTTGATAAGATCGAAGGGGTTGAAAATCATCAGCGAGACGAATGATAATAAAAAAGGAATTTCGAAATACAATGAAATTTGGGGGAGGAGCAGACAGTGTGGCAAAAAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATCAATCGTTCCCCTGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCCCTCAATAAGTCCGTTCGATTCATATGATTTCGGTATTAGTCTGCTGAAAATTAATGAAAGTATTACGAAAAAAAAATTGAAATGACCCACTCAATGAACGGAACGAATCCCGACCCCGATTTTTGATGAAAAACAGCTGGCGAATTTTGATCGGAACTCGTCGGACGATCTGAGGAACTTGATGACGGCTGTCCGGGTGGAAGAGGTACTCTTTGAGATCTAAAAAGGATAATGCTTGAGAGCCAAAGGTAAATATGTAGTTTACCGATCTCATCAATAGTTTGATCTCTACCGTTTCAGTTGTTCCAGTATTCAAGAACGTCTTCGAAAGAGCCGACTGATCTTGGTGCATTTGAAGAAGCTGGCTCACAATGAGCGAGTGGTGGAGGTGCTGGCGTAGTCGGTGCTGAAAATAATCATTTTTAGCATAACTCAACTTGCAAAAGTTAG</canonical>
            <polymorphic>GACGAACTCAACGTCTTCTGAATCCATCTGAAGTGCTTGTGGATTGCTCATAATGGTCCTAAAATGATAGTTCTGGAATAAAAAAGCGTAATTCTGCGCAAAAATTCTATGCAACGAGAAATAGTCCACATGACTTTGCAGCTATTCGAGTTCTATGTCTCAATTTCTCTCAGTCTCCTATCTCTCACTTTACTGTTCACAATGTCTAATCTCTGCTCTCATCTAATCAAGATTTATTGATAGAGCATACAAAATTTGAAATTTAGAAAAAAGGAACATAGGAAAAAATTTAGCGACGTTGATAAGATCGAAGGGGTTGAAAATCATCAGCGAGACGAATGATAATAAAAAAGGAATTTCGAAATACAATGAAATTTGGGGGAGGAGCAGACAGTGTGGCAAAAAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATCAATCRTTCCCCTGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCCCTCAATAAGTCCGTTCGATTCATATGATTTCGGTATTAGTCTGCTGAAAATTAATGAAAGTATTACGAAAAAAAAATTGAAATGACCCACTCAATGAACGGAACGAATCCCGACCCCGATTTTTGATGAAAAACAGCTGGCGAATTTTGATCGGAACTCGTCGGACGATCTGAGGAACTTGATGACGGCTGTCCGGGTGGAAGAGGTACTCTTTGAGATCTAAAAAGGATAATGCTTGAGAGCCAAAGGTAAATATGTAGTTTACCGATCTCATCAATAGTTTGATCTCTACCGTTTCAGTTGTTCCAGTATTCAAGAACGTCTTCGAAAGAGCCGACTGATCTTGGTGCATTTGAAGAAGCTGGCTCACAATGAGCGAGTGGTGGAGGTGCTGGCGTAGTCGGTGCTGAAAATAATCATTTTTAGCATAACTCAACTTGCAAAAGTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCAAATCGGAAATTG</pcr_primer_p1>
		<pcr_primer_p2>GTTCATTGAGTGGGTCATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATCAATCGTTCCCCTGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCCCTCAATAAGTCCGTTCGATTCATATGATTTCGGTATTAGTCTGCTGAAAATTAATGAAAGTATTACGAAAAAAAAATTGAAATGACCCACTCAATGAAC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATCAATCRTTCCCCTGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCCCTCAATAAGTCCGTTCGATTCATATGATTTCGGTATTAGTCTGCTGAAAATTAATGAAAGTATTACGAAAAAAAAATTGAAATGACCCACTCAATGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31826</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>125813</contig_pos>
        <strand></strand>
        <context>TCCCCTGGCG[A/G]CTTGGTCTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATACTGTAGGCGTCCTTTTTCAATCTCGAATATCAATCGTTCCCCTGGCG</left_flank>
        <right_flank>CTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCCCTCAATAAGTCC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCTTCTGAATCCATCTGAAGTGCTTGTGGATTGCTCATAATGGTCCTAAAATGATAGTTCTGGAATAAAAAAGCGTAATTCTGCGCAAAAATTCTATGCAACGAGAAATAGTCCACATGACTTTGCAGCTATTCGAGTTCTATGTCTCAATTTCTCTCAGTCTCCTATCTCTCACTTTACTGTTCACAATGTCTAATCTCTGCTCTCATCTAATCAAGATTTATTGATAGAGCATACAAAATTTGAAATTTAGAAAAAAGGAACATAGGAAAAAATTTAGCGACGTTGATAAGATCGAAGGGGTTGAAAATCATCAGCGAGACGAATGATAATAAAAAAGGAATTTCGAAATACAATGAAATTTGGGGGAGGAGCAGACAGTGTGGCAAAAAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATCAATCGTTCCCCTGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCCCTCAATAAGTCCGTTCGATTCATATGATTTCGGTATTAGTCTGCTGAAAATTAATGAAAGTATTACGAAAAAAAAATTGAAATGACCCACTCAATGAACGGAACGAATCCCGACCCCGATTTTTGATGAAAAACAGCTGGCGAATTTTGATCGGAACTCGTCGGACGATCTGAGGAACTTGATGACGGCTGTCCGGGTGGAAGAGGTACTCTTTGAGATCTAAAAAGGATAATGCTTGAGAGCCAAAGGTAAATATGTAGTTTACCGATCTCATCAATAGTTTGATCTCTACCGTTTCAGTTGTTCCAGTATTCAAGAACGTCTTCGAAAGAGCCGACTGATCTTGGTGCATTTGAAGAAGCTGGCTCACAATGAGCGAGTGGTGGAGGTGCTGGCGTAGTCGGTGCTGAAAATAATCATTTTTAGCATAACTCAACTTGCAAAAGTTAGACCACTATATTT</canonical>
            <polymorphic>GTCTTCTGAATCCATCTGAAGTGCTTGTGGATTGCTCATAATGGTCCTAAAATGATAGTTCTGGAATAAAAAAGCGTAATTCTGCGCAAAAATTCTATGCAACGAGAAATAGTCCACATGACTTTGCAGCTATTCGAGTTCTATGTCTCAATTTCTCTCAGTCTCCTATCTCTCACTTTACTGTTCACAATGTCTAATCTCTGCTCTCATCTAATCAAGATTTATTGATAGAGCATACAAAATTTGAAATTTAGAAAAAAGGAACATAGGAAAAAATTTAGCGACGTTGATAAGATCGAAGGGGTTGAAAATCATCAGCGAGACGAATGATAATAAAAAAGGAATTTCGAAATACAATGAAATTTGGGGGAGGAGCAGACAGTGTGGCAAAAAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATCAATCGTTCCCCTGGCGRCTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCCCTCAATAAGTCCGTTCGATTCATATGATTTCGGTATTAGTCTGCTGAAAATTAATGAAAGTATTACGAAAAAAAAATTGAAATGACCCACTCAATGAACGGAACGAATCCCGACCCCGATTTTTGATGAAAAACAGCTGGCGAATTTTGATCGGAACTCGTCGGACGATCTGAGGAACTTGATGACGGCTGTCCGGGTGGAAGAGGTACTCTTTGAGATCTAAAAAGGATAATGCTTGAGAGCCAAAGGTAAATATGTAGTTTACCGATCTCATCAATAGTTTGATCTCTACCGTTTCAGTTGTTCCAGTATTCAAGAACGTCTTCGAAAGAGCCGACTGATCTTGGTGCATTTGAAGAAGCTGGCTCACAATGAGCGAGTGGTGGAGGTGCTGGCGTAGTCGGTGCTGAAAATAATCATTTTTAGCATAACTCAACTTGCAAAAGTTAGACCACTATATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNGTC</site>
                <isoschizomers>
                    <enzyme>AspI</enzyme>
                    <enzyme>PflFI</enzyme>
                    <enzyme>PsyI</enzyme>
                    <enzyme>TelI</enzyme>
                    <enzyme>Tth111I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCAAATCGGAAATTG</pcr_primer_p1>
		<pcr_primer_p2>GTTCATTGAGTGGGTCATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATCAATCGTTCCCCTGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCCCTCAATAAGTCCGTTCGATTCATATGATTTCGGTATTAGTCTGCTGAAAATTAATGAAAGTATTACGAAAAAAAAATTGAAATGACCCACTCAATGAAC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATCAATCGTTCCCCTGGCGRCTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCCCTCAATAAGTCCGTTCGATTCATATGATTTCGGTATTAGTCTGCTGAAAATTAATGAAAGTATTACGAAAAAAAAATTGAAATGACCCACTCAATGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31827</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>125858</contig_pos>
        <strand></strand>
        <context>CTCCCTCAAT[A/G]AGTCCGTTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCCCTCAAT</left_flank>
        <right_flank>AGTCCGTTCGATTCATATGATTTCGGTATTAGTCTGCTGAAAATTAATGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTAAAATGATAGTTCTGGAATAAAAAAGCGTAATTCTGCGCAAAAATTCTATGCAACGAGAAATAGTCCACATGACTTTGCAGCTATTCGAGTTCTATGTCTCAATTTCTCTCAGTCTCCTATCTCTCACTTTACTGTTCACAATGTCTAATCTCTGCTCTCATCTAATCAAGATTTATTGATAGAGCATACAAAATTTGAAATTTAGAAAAAAGGAACATAGGAAAAAATTTAGCGACGTTGATAAGATCGAAGGGGTTGAAAATCATCAGCGAGACGAATGATAATAAAAAAGGAATTTCGAAATACAATGAAATTTGGGGGAGGAGCAGACAGTGTGGCAAAAAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATCAATCGTTCCCCTGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCCCTCAATAAGTCCGTTCGATTCATATGATTTCGGTATTAGTCTGCTGAAAATTAATGAAAGTATTACGAAAAAAAAATTGAAATGACCCACTCAATGAACGGAACGAATCCCGACCCCGATTTTTGATGAAAAACAGCTGGCGAATTTTGATCGGAACTCGTCGGACGATCTGAGGAACTTGATGACGGCTGTCCGGGTGGAAGAGGTACTCTTTGAGATCTAAAAAGGATAATGCTTGAGAGCCAAAGGTAAATATGTAGTTTACCGATCTCATCAATAGTTTGATCTCTACCGTTTCAGTTGTTCCAGTATTCAAGAACGTCTTCGAAAGAGCCGACTGATCTTGGTGCATTTGAAGAAGCTGGCTCACAATGAGCGAGTGGTGGAGGTGCTGGCGTAGTCGGTGCTGAAAATAATCATTTTTAGCATAACTCAACTTGCAAAAGTTAGACCACTATATTTACCATAAAAACTCTATTACATAGCCATGGAGTGGCATTCAATTAG</canonical>
            <polymorphic>CCTAAAATGATAGTTCTGGAATAAAAAAGCGTAATTCTGCGCAAAAATTCTATGCAACGAGAAATAGTCCACATGACTTTGCAGCTATTCGAGTTCTATGTCTCAATTTCTCTCAGTCTCCTATCTCTCACTTTACTGTTCACAATGTCTAATCTCTGCTCTCATCTAATCAAGATTTATTGATAGAGCATACAAAATTTGAAATTTAGAAAAAAGGAACATAGGAAAAAATTTAGCGACGTTGATAAGATCGAAGGGGTTGAAAATCATCAGCGAGACGAATGATAATAAAAAAGGAATTTCGAAATACAATGAAATTTGGGGGAGGAGCAGACAGTGTGGCAAAAAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATCAATCGTTCCCCTGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCCCTCAATRAGTCCGTTCGATTCATATGATTTCGGTATTAGTCTGCTGAAAATTAATGAAAGTATTACGAAAAAAAAATTGAAATGACCCACTCAATGAACGGAACGAATCCCGACCCCGATTTTTGATGAAAAACAGCTGGCGAATTTTGATCGGAACTCGTCGGACGATCTGAGGAACTTGATGACGGCTGTCCGGGTGGAAGAGGTACTCTTTGAGATCTAAAAAGGATAATGCTTGAGAGCCAAAGGTAAATATGTAGTTTACCGATCTCATCAATAGTTTGATCTCTACCGTTTCAGTTGTTCCAGTATTCAAGAACGTCTTCGAAAGAGCCGACTGATCTTGGTGCATTTGAAGAAGCTGGCTCACAATGAGCGAGTGGTGGAGGTGCTGGCGTAGTCGGTGCTGAAAATAATCATTTTTAGCATAACTCAACTTGCAAAAGTTAGACCACTATATTTACCATAAAAACTCTATTACATAGCCATGGAGTGGCATTCAATTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCAAATCGGAAATTG</pcr_primer_p1>
		<pcr_primer_p2>GTTCATTGAGTGGGTCATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATCAATCGTTCCCCTGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCCCTCAATAAGTCCGTTCGATTCATATGATTTCGGTATTAGTCTGCTGAAAATTAATGAAAGTATTACGAAAAAAAAATTGAAATGACCCACTCAATGAAC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATCAATCGTTCCCCTGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCCCTCAATRAGTCCGTTCGATTCATATGATTTCGGTATTAGTCTGCTGAAAATTAATGAAAGTATTACGAAAAAAAAATTGAAATGACCCACTCAATGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31828</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>125889</contig_pos>
        <strand></strand>
        <context>TTTCGGTATT[A/G]GYCTGCTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAAGGAGCTCCCTCAATAAGTCCGTTCGATTCATATGATTTCGGTATT</left_flank>
        <right_flank>GTCTGCTGAAAATTAATGAAAGTATTACGAAAAAAAAATTGAAATGACCC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTCTGCGCAAAAATTCTATGCAACGAGAAATAGTCCACATGACTTTGCAGCTATTCGAGTTCTATGTCTCAATTTCTCTCAGTCTCCTATCTCTCACTTTACTGTTCACAATGTCTAATCTCTGCTCTCATCTAATCAAGATTTATTGATAGAGCATACAAAATTTGAAATTTAGAAAAAAGGAACATAGGAAAAAATTTAGCGACGTTGATAAGATCGAAGGGGTTGAAAATCATCAGCGAGACGAATGATAATAAAAAAGGAATTTCGAAATACAATGAAATTTGGGGGAGGAGCAGACAGTGTGGCAAAAAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATCAATCGTTCCCCTGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCCCTCAATAAGTCCGTTCGATTCATATGATTTCGGTATTAGTCTGCTGAAAATTAATGAAAGTATTACGAAAAAAAAATTGAAATGACCCACTCAATGAACGGAACGAATCCCGACCCCGATTTTTGATGAAAAACAGCTGGCGAATTTTGATCGGAACTCGTCGGACGATCTGAGGAACTTGATGACGGCTGTCCGGGTGGAAGAGGTACTCTTTGAGATCTAAAAAGGATAATGCTTGAGAGCCAAAGGTAAATATGTAGTTTACCGATCTCATCAATAGTTTGATCTCTACCGTTTCAGTTGTTCCAGTATTCAAGAACGTCTTCGAAAGAGCCGACTGATCTTGGTGCATTTGAAGAAGCTGGCTCACAATGAGCGAGTGGTGGAGGTGCTGGCGTAGTCGGTGCTGAAAATAATCATTTTTAGCATAACTCAACTTGCAAAAGTTAGACCACTATATTTACCATAAAAACTCTATTACATAGCCATGGAGTGGCATTCAATTAGAGGCTGGCACTTTATTGTTCGGAGTCAATTT</canonical>
            <polymorphic>TAATTCTGCGCAAAAATTCTATGCAACGAGAAATAGTCCACATGACTTTGCAGCTATTCGAGTTCTATGTCTCAATTTCTCTCAGTCTCCTATCTCTCACTTTACTGTTCACAATGTCTAATCTCTGCTCTCATCTAATCAAGATTTATTGATAGAGCATACAAAATTTGAAATTTAGAAAAAAGGAACATAGGAAAAAATTTAGCGACGTTGATAAGATCGAAGGGGTTGAAAATCATCAGCGAGACGAATGATAATAAAAAAGGAATTTCGAAATACAATGAAATTTGGGGGAGGAGCAGACAGTGTGGCAAAAAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATCAATCGTTCCCCTGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCCCTCAATAAGTCCGTTCGATTCATATGATTTCGGTATTRGTCTGCTGAAAATTAATGAAAGTATTACGAAAAAAAAATTGAAATGACCCACTCAATGAACGGAACGAATCCCGACCCCGATTTTTGATGAAAAACAGCTGGCGAATTTTGATCGGAACTCGTCGGACGATCTGAGGAACTTGATGACGGCTGTCCGGGTGGAAGAGGTACTCTTTGAGATCTAAAAAGGATAATGCTTGAGAGCCAAAGGTAAATATGTAGTTTACCGATCTCATCAATAGTTTGATCTCTACCGTTTCAGTTGTTCCAGTATTCAAGAACGTCTTCGAAAGAGCCGACTGATCTTGGTGCATTTGAAGAAGCTGGCTCACAATGAGCGAGTGGTGGAGGTGCTGGCGTAGTCGGTGCTGAAAATAATCATTTTTAGCATAACTCAACTTGCAAAAGTTAGACCACTATATTTACCATAAAAACTCTATTACATAGCCATGGAGTGGCATTCAATTAGAGGCTGGCACTTTATTGTTCGGAGTCAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCAAATCGGAAATTG</pcr_primer_p1>
		<pcr_primer_p2>GTTCATTGAGTGGGTCATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATCAATCGTTCCCCTGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCCCTCAATAAGTCCGTTCGATTCATATGATTTCGGTATTAGTCTGCTGAAAATTAATGAAAGTATTACGAAAAAAAAATTGAAATGACCCACTCAATGAAC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATCAATCGTTCCCCTGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCCCTCAATAAGTCCGTTCGATTCATATGATTTCGGTATTRGTCTGCTGAAAATTAATGAAAGTATTACGAAAAAAAAATTGAAATGACCCACTCAATGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31829</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>125891</contig_pos>
        <strand></strand>
        <context>TCGGTATTRG[T/C]CTGCTGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAGGAGCTCCCTCAATAAGTCCGTTCGATTCATATGATTTCGGTATTAG</left_flank>
        <right_flank>CTGCTGAAAATTAATGAAAGTATTACGAAAAAAAAATTGAAATGACCCAC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTGCGCAAAAATTCTATGCAACGAGAAATAGTCCACATGACTTTGCAGCTATTCGAGTTCTATGTCTCAATTTCTCTCAGTCTCCTATCTCTCACTTTACTGTTCACAATGTCTAATCTCTGCTCTCATCTAATCAAGATTTATTGATAGAGCATACAAAATTTGAAATTTAGAAAAAAGGAACATAGGAAAAAATTTAGCGACGTTGATAAGATCGAAGGGGTTGAAAATCATCAGCGAGACGAATGATAATAAAAAAGGAATTTCGAAATACAATGAAATTTGGGGGAGGAGCAGACAGTGTGGCAAAAAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATCAATCGTTCCCCTGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCCCTCAATAAGTCCGTTCGATTCATATGATTTCGGTATTAGTCTGCTGAAAATTAATGAAAGTATTACGAAAAAAAAATTGAAATGACCCACTCAATGAACGGAACGAATCCCGACCCCGATTTTTGATGAAAAACAGCTGGCGAATTTTGATCGGAACTCGTCGGACGATCTGAGGAACTTGATGACGGCTGTCCGGGTGGAAGAGGTACTCTTTGAGATCTAAAAAGGATAATGCTTGAGAGCCAAAGGTAAATATGTAGTTTACCGATCTCATCAATAGTTTGATCTCTACCGTTTCAGTTGTTCCAGTATTCAAGAACGTCTTCGAAAGAGCCGACTGATCTTGGTGCATTTGAAGAAGCTGGCTCACAATGAGCGAGTGGTGGAGGTGCTGGCGTAGTCGGTGCTGAAAATAATCATTTTTAGCATAACTCAACTTGCAAAAGTTAGACCACTATATTTACCATAAAAACTCTATTACATAGCCATGGAGTGGCATTCAATTAGAGGCTGGCACTTTATTGTTCGGAGTCAATTTCT</canonical>
            <polymorphic>ATTCTGCGCAAAAATTCTATGCAACGAGAAATAGTCCACATGACTTTGCAGCTATTCGAGTTCTATGTCTCAATTTCTCTCAGTCTCCTATCTCTCACTTTACTGTTCACAATGTCTAATCTCTGCTCTCATCTAATCAAGATTTATTGATAGAGCATACAAAATTTGAAATTTAGAAAAAAGGAACATAGGAAAAAATTTAGCGACGTTGATAAGATCGAAGGGGTTGAAAATCATCAGCGAGACGAATGATAATAAAAAAGGAATTTCGAAATACAATGAAATTTGGGGGAGGAGCAGACAGTGTGGCAAAAAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATCAATCGTTCCCCTGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCCCTCAATAAGTCCGTTCGATTCATATGATTTCGGTATTAGYCTGCTGAAAATTAATGAAAGTATTACGAAAAAAAAATTGAAATGACCCACTCAATGAACGGAACGAATCCCGACCCCGATTTTTGATGAAAAACAGCTGGCGAATTTTGATCGGAACTCGTCGGACGATCTGAGGAACTTGATGACGGCTGTCCGGGTGGAAGAGGTACTCTTTGAGATCTAAAAAGGATAATGCTTGAGAGCCAAAGGTAAATATGTAGTTTACCGATCTCATCAATAGTTTGATCTCTACCGTTTCAGTTGTTCCAGTATTCAAGAACGTCTTCGAAAGAGCCGACTGATCTTGGTGCATTTGAAGAAGCTGGCTCACAATGAGCGAGTGGTGGAGGTGCTGGCGTAGTCGGTGCTGAAAATAATCATTTTTAGCATAACTCAACTTGCAAAAGTTAGACCACTATATTTACCATAAAAACTCTATTACATAGCCATGGAGTGGCATTCAATTAGAGGCTGGCACTTTATTGTTCGGAGTCAATTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCAAATCGGAAATTG</pcr_primer_p1>
		<pcr_primer_p2>GTTCATTGAGTGGGTCATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATCAATCGTTCCCCTGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCCCTCAATAAGTCCGTTCGATTCATATGATTTCGGTATTAGTCTGCTGAAAATTAATGAAAGTATTACGAAAAAAAAATTGAAATGACCCACTCAATGAAC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATCAATCGTTCCCCTGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCCCTCAATAAGTCCGTTCGATTCATATGATTTCGGTATTAGYCTGCTGAAAATTAATGAAAGTATTACGAAAAAAAAATTGAAATGACCCACTCAATGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31830</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>125911</contig_pos>
        <strand></strand>
        <context>ATTAATGAAA[G/T]TATTACGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCCGTTCGATTCATATGATTTCGGTATTAGTCTGCTGAAAATTAATGAAA</left_flank>
        <right_flank>TATTACGAAAAAAAAATTGAAATGACCCACTCAATGAACGGAACGAATCC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAACGAGAAATAGTCCACATGACTTTGCAGCTATTCGAGTTCTATGTCTCAATTTCTCTCAGTCTCCTATCTCTCACTTTACTGTTCACAATGTCTAATCTCTGCTCTCATCTAATCAAGATTTATTGATAGAGCATACAAAATTTGAAATTTAGAAAAAAGGAACATAGGAAAAAATTTAGCGACGTTGATAAGATCGAAGGGGTTGAAAATCATCAGCGAGACGAATGATAATAAAAAAGGAATTTCGAAATACAATGAAATTTGGGGGAGGAGCAGACAGTGTGGCAAAAAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATCAATCGTTCCCCTGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCCCTCAATAAGTCCGTTCGATTCATATGATTTCGGTATTAGTCTGCTGAAAATTAATGAAAGTATTACGAAAAAAAAATTGAAATGACCCACTCAATGAACGGAACGAATCCCGACCCCGATTTTTGATGAAAAACAGCTGGCGAATTTTGATCGGAACTCGTCGGACGATCTGAGGAACTTGATGACGGCTGTCCGGGTGGAAGAGGTACTCTTTGAGATCTAAAAAGGATAATGCTTGAGAGCCAAAGGTAAATATGTAGTTTACCGATCTCATCAATAGTTTGATCTCTACCGTTTCAGTTGTTCCAGTATTCAAGAACGTCTTCGAAAGAGCCGACTGATCTTGGTGCATTTGAAGAAGCTGGCTCACAATGAGCGAGTGGTGGAGGTGCTGGCGTAGTCGGTGCTGAAAATAATCATTTTTAGCATAACTCAACTTGCAAAAGTTAGACCACTATATTTACCATAAAAACTCTATTACATAGCCATGGAGTGGCATTCAATTAGAGGCTGGCACTTTATTGTTCGGAGTCAATTTCTACTGAAACTCATCACAAAAG</canonical>
            <polymorphic>GCAACGAGAAATAGTCCACATGACTTTGCAGCTATTCGAGTTCTATGTCTCAATTTCTCTCAGTCTCCTATCTCTCACTTTACTGTTCACAATGTCTAATCTCTGCTCTCATCTAATCAAGATTTATTGATAGAGCATACAAAATTTGAAATTTAGAAAAAAGGAACATAGGAAAAAATTTAGCGACGTTGATAAGATCGAAGGGGTTGAAAATCATCAGCGAGACGAATGATAATAAAAAAGGAATTTCGAAATACAATGAAATTTGGGGGAGGAGCAGACAGTGTGGCAAAAAAAATCAAATCGGAAATTGCAAAAAGAAGGGAGAAAACTAAATGATTCATTCGCTGGATACTGTAGGCGTCCTTTTTCAATCTCGAATATCAATCGTTCCCCTGGCGACTTGGTCTTCCTGTGAATTCTTGATGAAAAGGAGCTCCCTCAATAAGTCCGTTCGATTCATATGATTTCGGTATTAGTCTGCTGAAAATTAATGAAAKTATTACGAAAAAAAAATTGAAATGACCCACTCAATGAACGGAACGAATCCCGACCCCGATTTTTGATGAAAAACAGCTGGCGAATTTTGATCGGAACTCGTCGGACGATCTGAGGAACTTGATGACGGCTGTCCGGGTGGAAGAGGTACTCTTTGAGATCTAAAAAGGATAATGCTTGAGAGCCAAAGGTAAATATGTAGTTTACCGATCTCATCAATAGTTTGATCTCTACCGTTTCAGTTGTTCCAGTATTCAAGAACGTCTTCGAAAGAGCCGACTGATCTTGGTGCATTTGAAGAAGCTGGCTCACAATGAGCGAGTGGTGGAGGTGCTGGCGTAGTCGGTGCTGAAAATAATCATTTTTAGCATAACTCAACTTGCAAAAGTTAGACCACTATATTTACCATAAAAACTCTATTACATAGCCATGGAGTGGCATTCAATTAGAGGCTGGCACTTTATTGTTCGGAGTCAATTTCTACTGAAACTCATCACAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGAATTCTTGATGAAAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>TCTCAAGCATTATCCTTTTTAGAT</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>GTGAATTCTTGATGAAAAGGAGCTCCCTCAATAAGTCCGTTCGATTCATATGATTTCGGTATTAGTCTGCTGAAAATTAATGAAAGTATTACGAAAAAAAAATTGAAATGACCCACTCAATGAACGGAACGAATCCCGACCCCGATTTTTGATGAAAAACAGCTGGCGAATTTTGATCGGAACTCGTCGGACGATCTGAGGAACTTGATGACGGCTGTCCGGGTGGAAGAGGTACTCTTTGAGATCTAAAAAGGATAATGCTTGAGA</canonical_amplicon>
		<polymorphic_amplicon>GTGAATTCTTGATGAAAAGGAGCTCCCTCAATAAGTCCGTTCGATTCATATGATTTCGGTATTAGTCTGCTGAAAATTAATGAAAKTATTACGAAAAAAAAATTGAAATGACCCACTCAATGAACGGAACGAATCCCGACCCCGATTTTTGATGAAAAACAGCTGGCGAATTTTGATCGGAACTCGTCGGACGATCTGAGGAACTTGATGACGGCTGTCCGGGTGGAAGAGGTACTCTTTGAGATCTAAAAAGGATAATGCTTGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31831</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>142978</contig_pos>
        <strand>-</strand>
        <context>TTCTGCGCGC[G/T/A/C]GTCGGGTACT</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T/A/C</alleles>
        <left_flank>TGGCCACTATTCCTTTCCCCTTGATTTCCTCTATGTGTCATTCTGCGCGC</left_flank>
        <right_flank>GTCGGGTACTTGCCAACATTCAACCTCACACACAAGTACGAGTGTGCTAG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATCACCTTCTGGATGCCCAATACGCAATCTTATATTCCTTCTCATCGCAACTCAGAGCAGACCGATATATGTTCATCCGACATAGATTGCGCACATTTTTCTACTATTCGTTTTTCTGTCCTGACGAGACACACGCGGTAGGAATAGAAAGATGTTAAACTACAACGAATTATGAGGAAATCTGATAATTCACAATTGCGTTTTAGACTTAGAAATCGCATATTTCCAAAGCAATAAGAAGCATGAACTACCGTAATTCTTTTTTTTTTTGAAAATATCTGTGTTTTTCCAAAACTGAAGTTAAGACACATAAGTTTCCATCCATTGAAATTCCTAACACCTAAAATGCCTATATCTTTAAAGTCCTGCCCCTTCACAGTCCGTCTTCTCCTTTTTGTTCAGATTTATCTCTTCATCAGATTCTGCATCATTTTCTGACATTTTCAGTGGCCACTATTCCTTTCCCCTTGATTTCCTCTATGTGTCATTCTGCGCGCAGTCGGGTACTTGCCAACATTCAACCTCACACACAAGTACGAGTGTGCTAGACCCCAAAAAGAAGAGTTGCCTGACACCGAGAAGACACACAACTCGCTACTTCAACTCTGCAGAAGAAAAGTGCGATGTTGTCCTGACAACGGGTGGGCTCAAAGAGCACGGAGGTGGCTGGGAGGGTAAGGCGAAGATGGAAGGCATTGATGTGGATCTGGAAAAAGCGGAGAAACGTCTGGAAGTCAAAATTAGATATTTATTCGGAAGAAAGAAGTCTTTAGGACCACTCTAGCCGGGACAGAAGACATAAGGAAGAAGGAATGCGCAGAAAATCACAGGTATTGATAAAGATCAGAAGTCGGGTAGTAAGCAACAATGAAGAACAGGAAGAATGGATATTGAAGAAGAGAAAAATAATTGAGGGAATTGAGAAATGTTGAAGATACACAATTTTTCAGGTTAAATTTGAGGAGAAGGGTCGGAAAAAACAGACATGAATATGATGA</canonical>
            <polymorphic>CCATCACCTTCTGGATGCCCAATACGCAATCTTATATTCCTTCTCATCGCAACTCAGAGCAGACCGATATATGTTCATCCGACATAGATTGCGCACATTTTTCTACTATTCGTTTTTCTGTCCTGACGAGACACACGCGGTAGGAATAGAAAGATGTTAAACTACAACGAATTATGAGGAAATCTGATAATTCACAATTGCGTTTTAGACTTAGAAATCGCATATTTCCAAAGCAATAAGAAGCATGAACTACCGTAATTCTTTTTTTTTTTGAAAATATCTGTGTTTTTCCAAAACTGAAGTTAAGACACATAAGTTTCCATCCATTGAAATTCCTAACACCTAAAATGCCTATATCTTTAAAGTCCTGCCCCTTCACAGTCCGTCTTCTCCTTTTTGTTCAGATTTATCTCTTCATCAGATTCTGCATCATTTTCTGACATTTTCAGTGGCCACTATTCCTTTCCCCTTGATTTCCTCTATGTGTCATTCTGCGCGCKGTCGGGTACTTGCCAACATTCAACCTCACACACAAGTACGAGTGTGCTAGACCCCAAAAAGAAGAGTTGCCTGACACCGAGAAGACACACAACTCGCTACTTCAACTCTGCAGAAGAAAAGTGCGATGTTGTCCTGACAACGGGTGGGCTCAAAGAGCACGGAGGTGGCTGGGAGGGTAAGGCGAAGATGGAAGGCATTGATGTGGATCTGGAAAAAGCGGAGAAACGTCTGGAAGTCAAAATTAGATATTTATTCGGAAGAAAGAAGTCTTTAGGACCACTCTAGCCGGGACAGAAGACATAAGGAAGAAGGAATGCGCAGAAAATCACAGGTATTGATAAAGATCAGAAGTCGGGTAGTAAGCAACAATGAAGAACAGGAAGAATGGATATTGAAGAAGAGAAAAATAATTGAGGGAATTGAGAAATGTTGAAGATACACAATTTTTCAGGTTAAATTTGAGGAGAAGGGTCGGAAAAAACAGACATGAATATGATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAATTCCTAACACCTAAAATG</pcr_primer_p1>
		<pcr_primer_p2>GTGTCAGGCAACTCTTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAAATTCCTAACACCTAAAATGCCTATATCTTTAAAGTCCTGCCCCTTCACAGTCCGTCTTCTCCTTTTTGTTCAGATTTATCTCTTCATCAGATTCTGCATCATTTTCTGACATTTTCAGTGGCCACTATTCCTTTCCCCTTGATTTCCTCTATGTGTCATTCTGCGCGCAGTCGGGTACTTGCCAACATTCAACCTCACACACAAGTACGAGTGTGCTAGACCCCAAAAAGAAGAGTTGCCTGACAC</canonical_amplicon>
		<polymorphic_amplicon>TGAAATTCCTAACACCTAAAATGCCTATATCTTTAAAGTCCTGCCCCTTCACAGTCCGTCTTCTCCTTTTTGTTCAGATTTATCTCTTCATCAGATTCTGCATCATTTTCTGACATTTTCAGTGGCCACTATTCCTTTCCCCTTGATTTCCTCTATGTGTCATTCTGCGCGCKGTCGGGTACTTGCCAACATTCAACCTCACACACAAGTACGAGTGTGCTAGACCCCAAAAAGAAGAGTTGCCTGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31832</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>143027</contig_pos>
        <strand>-</strand>
        <context>CGAGTGTGCT[G/T/A/C]GACCCCAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T/A/C</alleles>
        <left_flank>CAGTCGGGTACTTGCCAACATTCAACCTCACACACAAGTACGAGTGTGCT</left_flank>
        <right_flank>GACCCCAAAAAGAAGAGTTGCCTGACACCGAGAAGACACACAACTCGCTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACTCAGAGCAGACCGATATATGTTCATCCGACATAGATTGCGCACATTTTTCTACTATTCGTTTTTCTGTCCTGACGAGACACACGCGGTAGGAATAGAAAGATGTTAAACTACAACGAATTATGAGGAAATCTGATAATTCACAATTGCGTTTTAGACTTAGAAATCGCATATTTCCAAAGCAATAAGAAGCATGAACTACCGTAATTCTTTTTTTTTTTGAAAATATCTGTGTTTTTCCAAAACTGAAGTTAAGACACATAAGTTTCCATCCATTGAAATTCCTAACACCTAAAATGCCTATATCTTTAAAGTCCTGCCCCTTCACAGTCCGTCTTCTCCTTTTTGTTCAGATTTATCTCTTCATCAGATTCTGCATCATTTTCTGACATTTTCAGTGGCCACTATTCCTTTCCCCTTGATTTCCTCTATGTGTCATTCTGCGCGCAGTCGGGTACTTGCCAACATTCAACCTCACACACAAGTACGAGTGTGCTAGACCCCAAAAAGAAGAGTTGCCTGACACCGAGAAGACACACAACTCGCTACTTCAACTCTGCAGAAGAAAAGTGCGATGTTGTCCTGACAACGGGTGGGCTCAAAGAGCACGGAGGTGGCTGGGAGGGTAAGGCGAAGATGGAAGGCATTGATGTGGATCTGGAAAAAGCGGAGAAACGTCTGGAAGTCAAAATTAGATATTTATTCGGAAGAAAGAAGTCTTTAGGACCACTCTAGCCGGGACAGAAGACATAAGGAAGAAGGAATGCGCAGAAAATCACAGGTATTGATAAAGATCAGAAGTCGGGTAGTAAGCAACAATGAAGAACAGGAAGAATGGATATTGAAGAAGAGAAAAATAATTGAGGGAATTGAGAAATGTTGAAGATACACAATTTTTCAGGTTAAATTTGAGGAGAAGGGTCGGAAAAAACAGACATGAATATGATGACCTGTAAAACATTAGCTAAGGTTCAACAACATTATTCTTGAAATTCCTT</canonical>
            <polymorphic>CAACTCAGAGCAGACCGATATATGTTCATCCGACATAGATTGCGCACATTTTTCTACTATTCGTTTTTCTGTCCTGACGAGACACACGCGGTAGGAATAGAAAGATGTTAAACTACAACGAATTATGAGGAAATCTGATAATTCACAATTGCGTTTTAGACTTAGAAATCGCATATTTCCAAAGCAATAAGAAGCATGAACTACCGTAATTCTTTTTTTTTTTGAAAATATCTGTGTTTTTCCAAAACTGAAGTTAAGACACATAAGTTTCCATCCATTGAAATTCCTAACACCTAAAATGCCTATATCTTTAAAGTCCTGCCCCTTCACAGTCCGTCTTCTCCTTTTTGTTCAGATTTATCTCTTCATCAGATTCTGCATCATTTTCTGACATTTTCAGTGGCCACTATTCCTTTCCCCTTGATTTCCTCTATGTGTCATTCTGCGCGCAGTCGGGTACTTGCCAACATTCAACCTCACACACAAGTACGAGTGTGCTKGACCCCAAAAAGAAGAGTTGCCTGACACCGAGAAGACACACAACTCGCTACTTCAACTCTGCAGAAGAAAAGTGCGATGTTGTCCTGACAACGGGTGGGCTCAAAGAGCACGGAGGTGGCTGGGAGGGTAAGGCGAAGATGGAAGGCATTGATGTGGATCTGGAAAAAGCGGAGAAACGTCTGGAAGTCAAAATTAGATATTTATTCGGAAGAAAGAAGTCTTTAGGACCACTCTAGCCGGGACAGAAGACATAAGGAAGAAGGAATGCGCAGAAAATCACAGGTATTGATAAAGATCAGAAGTCGGGTAGTAAGCAACAATGAAGAACAGGAAGAATGGATATTGAAGAAGAGAAAAATAATTGAGGGAATTGAGAAATGTTGAAGATACACAATTTTTCAGGTTAAATTTGAGGAGAAGGGTCGGAAAAAACAGACATGAATATGATGACCTGTAAAACATTAGCTAAGGTTCAACAACATTATTCTTGAAATTCCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>498 266 236</canonical_bands>
                <polymorphic_bands>734 266</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTGATTTCCTCTATGTGTCATT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCCAGATCCACATCAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTTGATTTCCTCTATGTGTCATTCTGCGCGCAGTCGGGTACTTGCCAACATTCAACCTCACACACAAGTACGAGTGTGCTAGACCCCAAAAAGAAGAGTTGCCTGACACCGAGAAGACACACAACTCGCTACTTCAACTCTGCAGAAGAAAAGTGCGATGTTGTCCTGACAACGGGTGGGCTCAAAGAGCACGGAGGTGGCTGGGAGGGTAAGGCGAAGATGGAAGGCATTGATGTGGATCTGGAAAA</canonical_amplicon>
		<polymorphic_amplicon>CTTGATTTCCTCTATGTGTCATTCTGCGCGCAGTCGGGTACTTGCCAACATTCAACCTCACACACAAGTACGAGTGTGCTKGACCCCAAAAAGAAGAGTTGCCTGACACCGAGAAGACACACAACTCGCTACTTCAACTCTGCAGAAGAAAAGTGCGATGTTGTCCTGACAACGGGTGGGCTCAAAGAGCACGGAGGTGGCTGGGAGGGTAAGGCGAAGATGGAAGGCATTGATGTGGATCTGGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31833</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>143173</contig_pos>
        <strand>-</strand>
        <context>AAGATGGAAG[A/C/G/T]CATTGATGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C/G/T</alleles>
        <left_flank>TGGGCTCAAAGAGCACGGAGGTGGCTGGGAGGGTAAGGCGAAGATGGAAG</left_flank>
        <right_flank>CATTGATGTGGATCTGGAAAAAGCGGAGAAACGTCTGGAAGTCAAAATTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGCGTTTTAGACTTAGAAATCGCATATTTCCAAAGCAATAAGAAGCATGAACTACCGTAATTCTTTTTTTTTTTGAAAATATCTGTGTTTTTCCAAAACTGAAGTTAAGACACATAAGTTTCCATCCATTGAAATTCCTAACACCTAAAATGCCTATATCTTTAAAGTCCTGCCCCTTCACAGTCCGTCTTCTCCTTTTTGTTCAGATTTATCTCTTCATCAGATTCTGCATCATTTTCTGACATTTTCAGTGGCCACTATTCCTTTCCCCTTGATTTCCTCTATGTGTCATTCTGCGCGCAGTCGGGTACTTGCCAACATTCAACCTCACACACAAGTACGAGTGTGCTAGACCCCAAAAAGAAGAGTTGCCTGACACCGAGAAGACACACAACTCGCTACTTCAACTCTGCAGAAGAAAAGTGCGATGTTGTCCTGACAACGGGTGGGCTCAAAGAGCACGGAGGTGGCTGGGAGGGTAAGGCGAAGATGGAAGGCATTGATGTGGATCTGGAAAAAGCGGAGAAACGTCTGGAAGTCAAAATTAGATATTTATTCGGAAGAAAGAAGTCTTTAGGACCACTCTAGCCGGGACAGAAGACATAAGGAAGAAGGAATGCGCAGAAAATCACAGGTATTGATAAAGATCAGAAGTCGGGTAGTAAGCAACAATGAAGAACAGGAAGAATGGATATTGAAGAAGAGAAAAATAATTGAGGGAATTGAGAAATGTTGAAGATACACAATTTTTCAGGTTAAATTTGAGGAGAAGGGTCGGAAAAAACAGACATGAATATGATGACCTGTAAAACATTAGCTAAGGTTCAACAACATTATTCTTGAAATTCCTTACTTTATATCGACGATTTCTCAATCATCTCTTCCAACTCGGTCTTCACACCCACACACGCTTTCAAAACGGATTGAGACGAATGCCCCCATTCCGGGAATCTCTCTTCACAGACGCCATGGTGGAACTCCGCAGTCTTGGCGGCAG</canonical>
            <polymorphic>AATTGCGTTTTAGACTTAGAAATCGCATATTTCCAAAGCAATAAGAAGCATGAACTACCGTAATTCTTTTTTTTTTTGAAAATATCTGTGTTTTTCCAAAACTGAAGTTAAGACACATAAGTTTCCATCCATTGAAATTCCTAACACCTAAAATGCCTATATCTTTAAAGTCCTGCCCCTTCACAGTCCGTCTTCTCCTTTTTGTTCAGATTTATCTCTTCATCAGATTCTGCATCATTTTCTGACATTTTCAGTGGCCACTATTCCTTTCCCCTTGATTTCCTCTATGTGTCATTCTGCGCGCAGTCGGGTACTTGCCAACATTCAACCTCACACACAAGTACGAGTGTGCTAGACCCCAAAAAGAAGAGTTGCCTGACACCGAGAAGACACACAACTCGCTACTTCAACTCTGCAGAAGAAAAGTGCGATGTTGTCCTGACAACGGGTGGGCTCAAAGAGCACGGAGGTGGCTGGGAGGGTAAGGCGAAGATGGAAGMCATTGATGTGGATCTGGAAAAAGCGGAGAAACGTCTGGAAGTCAAAATTAGATATTTATTCGGAAGAAAGAAGTCTTTAGGACCACTCTAGCCGGGACAGAAGACATAAGGAAGAAGGAATGCGCAGAAAATCACAGGTATTGATAAAGATCAGAAGTCGGGTAGTAAGCAACAATGAAGAACAGGAAGAATGGATATTGAAGAAGAGAAAAATAATTGAGGGAATTGAGAAATGTTGAAGATACACAATTTTTCAGGTTAAATTTGAGGAGAAGGGTCGGAAAAAACAGACATGAATATGATGACCTGTAAAACATTAGCTAAGGTTCAACAACATTATTCTTGAAATTCCTTACTTTATATCGACGATTTCTCAATCATCTCTTCCAACTCGGTCTTCACACCCACACACGCTTTCAAAACGGATTGAGACGAATGCCCCCATTCCGGGAATCTCTCTTCACAGACGCCATGGTGGAACTCCGCAGTCTTGGCGGCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAACTCTGCAGAAGAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TCTGATCTTTATCAATACCTGTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCAACTCTGCAGAAGAAAAGTGCGATGTTGTCCTGACAACGGGTGGGCTCAAAGAGCACGGAGGTGGCTGGGAGGGTAAGGCGAAGATGGAAGGCATTGATGTGGATCTGGAAAAAGCGGAGAAACGTCTGGAAGTCAAAATTAGATATTTATTCGGAAGAAAGAAGTCTTTAGGACCACTCTAGCCGGGACAGAAGACATAAGGAAGAAGGAATGCGCAGAAAATCACAGGTATTGATAAAGATCAGA</canonical_amplicon>
		<polymorphic_amplicon>TTCAACTCTGCAGAAGAAAAGTGCGATGTTGTCCTGACAACGGGTGGGCTCAAAGAGCACGGAGGTGGCTGGGAGGGTAAGGCGAAGATGGAAGMCATTGATGTGGATCTGGAAAAAGCGGAGAAACGTCTGGAAGTCAAAATTAGATATTTATTCGGAAGAAAGAAGTCTTTAGGACCACTCTAGCCGGGACAGAAGACATAAGGAAGAAGGAATGCGCAGAAAATCACAGGTATTGATAAAGATCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31834</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>143213</contig_pos>
        <strand>-</strand>
        <context>AACGTCTGGA[A/T]GTCAAAATTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGATGGAAGGCATTGATGTGGATCTGGAAAAAGCGGAGAAACGTCTGGA</left_flank>
        <right_flank>GTCAAAATTAGATATTTATTCGGAAGAAAGAAGTCTTTAGGACCACTCTA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAGAAGCATGAACTACCGTAATTCTTTTTTTTTTTGAAAATATCTGTGTTTTTCCAAAACTGAAGTTAAGACACATAAGTTTCCATCCATTGAAATTCCTAACACCTAAAATGCCTATATCTTTAAAGTCCTGCCCCTTCACAGTCCGTCTTCTCCTTTTTGTTCAGATTTATCTCTTCATCAGATTCTGCATCATTTTCTGACATTTTCAGTGGCCACTATTCCTTTCCCCTTGATTTCCTCTATGTGTCATTCTGCGCGCAGTCGGGTACTTGCCAACATTCAACCTCACACACAAGTACGAGTGTGCTAGACCCCAAAAAGAAGAGTTGCCTGACACCGAGAAGACACACAACTCGCTACTTCAACTCTGCAGAAGAAAAGTGCGATGTTGTCCTGACAACGGGTGGGCTCAAAGAGCACGGAGGTGGCTGGGAGGGTAAGGCGAAGATGGAAGGCATTGATGTGGATCTGGAAAAAGCGGAGAAACGTCTGGAAGTCAAAATTAGATATTTATTCGGAAGAAAGAAGTCTTTAGGACCACTCTAGCCGGGACAGAAGACATAAGGAAGAAGGAATGCGCAGAAAATCACAGGTATTGATAAAGATCAGAAGTCGGGTAGTAAGCAACAATGAAGAACAGGAAGAATGGATATTGAAGAAGAGAAAAATAATTGAGGGAATTGAGAAATGTTGAAGATACACAATTTTTCAGGTTAAATTTGAGGAGAAGGGTCGGAAAAAACAGACATGAATATGATGACCTGTAAAACATTAGCTAAGGTTCAACAACATTATTCTTGAAATTCCTTACTTTATATCGACGATTTCTCAATCATCTCTTCCAACTCGGTCTTCACACCCACACACGCTTTCAAAACGGATTGAGACGAATGCCCCCATTCCGGGAATCTCTCTTCACAGACGCCATGGTGGAACTCCGCAGTCTTGGCGGCAGCCTCAGATCTTCCCAAAACATCCTTCAAGCGTTTCTCTCG</canonical>
            <polymorphic>ATAAGAAGCATGAACTACCGTAATTCTTTTTTTTTTTGAAAATATCTGTGTTTTTCCAAAACTGAAGTTAAGACACATAAGTTTCCATCCATTGAAATTCCTAACACCTAAAATGCCTATATCTTTAAAGTCCTGCCCCTTCACAGTCCGTCTTCTCCTTTTTGTTCAGATTTATCTCTTCATCAGATTCTGCATCATTTTCTGACATTTTCAGTGGCCACTATTCCTTTCCCCTTGATTTCCTCTATGTGTCATTCTGCGCGCAGTCGGGTACTTGCCAACATTCAACCTCACACACAAGTACGAGTGTGCTAGACCCCAAAAAGAAGAGTTGCCTGACACCGAGAAGACACACAACTCGCTACTTCAACTCTGCAGAAGAAAAGTGCGATGTTGTCCTGACAACGGGTGGGCTCAAAGAGCACGGAGGTGGCTGGGAGGGTAAGGCGAAGATGGAAGGCATTGATGTGGATCTGGAAAAAGCGGAGAAACGTCTGGAWGTCAAAATTAGATATTTATTCGGAAGAAAGAAGTCTTTAGGACCACTCTAGCCGGGACAGAAGACATAAGGAAGAAGGAATGCGCAGAAAATCACAGGTATTGATAAAGATCAGAAGTCGGGTAGTAAGCAACAATGAAGAACAGGAAGAATGGATATTGAAGAAGAGAAAAATAATTGAGGGAATTGAGAAATGTTGAAGATACACAATTTTTCAGGTTAAATTTGAGGAGAAGGGTCGGAAAAAACAGACATGAATATGATGACCTGTAAAACATTAGCTAAGGTTCAACAACATTATTCTTGAAATTCCTTACTTTATATCGACGATTTCTCAATCATCTCTTCCAACTCGGTCTTCACACCCACACACGCTTTCAAAACGGATTGAGACGAATGCCCCCATTCCGGGAATCTCTCTTCACAGACGCCATGGTGGAACTCCGCAGTCTTGGCGGCAGCCTCAGATCTTCCCAAAACATCCTTCAAGCGTTTCTCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAACTCTGCAGAAGAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TCTGATCTTTATCAATACCTGTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCAACTCTGCAGAAGAAAAGTGCGATGTTGTCCTGACAACGGGTGGGCTCAAAGAGCACGGAGGTGGCTGGGAGGGTAAGGCGAAGATGGAAGGCATTGATGTGGATCTGGAAAAAGCGGAGAAACGTCTGGAAGTCAAAATTAGATATTTATTCGGAAGAAAGAAGTCTTTAGGACCACTCTAGCCGGGACAGAAGACATAAGGAAGAAGGAATGCGCAGAAAATCACAGGTATTGATAAAGATCAGA</canonical_amplicon>
		<polymorphic_amplicon>TTCAACTCTGCAGAAGAAAAGTGCGATGTTGTCCTGACAACGGGTGGGCTCAAAGAGCACGGAGGTGGCTGGGAGGGTAAGGCGAAGATGGAAGGCATTGATGTGGATCTGGAAAAAGCGGAGAAACGTCTGGAWGTCAAAATTAGATATTTATTCGGAAGAAAGAAGTCTTTAGGACCACTCTAGCCGGGACAGAAGACATAAGGAAGAAGGAATGCGCAGAAAATCACAGGTATTGATAAAGATCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31835</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>143224</contig_pos>
        <strand>-</strand>
        <context>GTCAAAATTA[C/T/G/A]ATATTTATTC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T/G/A</alleles>
        <left_flank>CATTGATGTGGATCTGGAAAAAGCGGAGAAACGTCTGGAAGTCAAAATTA</left_flank>
        <right_flank>ATATTTATTCGGAAGAAAGAAGTCTTTAGGACCACTCTAGCCGGGACAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACTACCGTAATTCTTTTTTTTTTTGAAAATATCTGTGTTTTTCCAAAACTGAAGTTAAGACACATAAGTTTCCATCCATTGAAATTCCTAACACCTAAAATGCCTATATCTTTAAAGTCCTGCCCCTTCACAGTCCGTCTTCTCCTTTTTGTTCAGATTTATCTCTTCATCAGATTCTGCATCATTTTCTGACATTTTCAGTGGCCACTATTCCTTTCCCCTTGATTTCCTCTATGTGTCATTCTGCGCGCAGTCGGGTACTTGCCAACATTCAACCTCACACACAAGTACGAGTGTGCTAGACCCCAAAAAGAAGAGTTGCCTGACACCGAGAAGACACACAACTCGCTACTTCAACTCTGCAGAAGAAAAGTGCGATGTTGTCCTGACAACGGGTGGGCTCAAAGAGCACGGAGGTGGCTGGGAGGGTAAGGCGAAGATGGAAGGCATTGATGTGGATCTGGAAAAAGCGGAGAAACGTCTGGAAGTCAAAATTAGATATTTATTCGGAAGAAAGAAGTCTTTAGGACCACTCTAGCCGGGACAGAAGACATAAGGAAGAAGGAATGCGCAGAAAATCACAGGTATTGATAAAGATCAGAAGTCGGGTAGTAAGCAACAATGAAGAACAGGAAGAATGGATATTGAAGAAGAGAAAAATAATTGAGGGAATTGAGAAATGTTGAAGATACACAATTTTTCAGGTTAAATTTGAGGAGAAGGGTCGGAAAAAACAGACATGAATATGATGACCTGTAAAACATTAGCTAAGGTTCAACAACATTATTCTTGAAATTCCTTACTTTATATCGACGATTTCTCAATCATCTCTTCCAACTCGGTCTTCACACCCACACACGCTTTCAAAACGGATTGAGACGAATGCCCCCATTCCGGGAATCTCTCTTCACAGACGCCATGGTGGAACTCCGCAGTCTTGGCGGCAGCCTCAGATCTTCCCAAAACATCCTTCAAGCGTTTCTCTCGGAGTTTCGCCT</canonical>
            <polymorphic>GAACTACCGTAATTCTTTTTTTTTTTGAAAATATCTGTGTTTTTCCAAAACTGAAGTTAAGACACATAAGTTTCCATCCATTGAAATTCCTAACACCTAAAATGCCTATATCTTTAAAGTCCTGCCCCTTCACAGTCCGTCTTCTCCTTTTTGTTCAGATTTATCTCTTCATCAGATTCTGCATCATTTTCTGACATTTTCAGTGGCCACTATTCCTTTCCCCTTGATTTCCTCTATGTGTCATTCTGCGCGCAGTCGGGTACTTGCCAACATTCAACCTCACACACAAGTACGAGTGTGCTAGACCCCAAAAAGAAGAGTTGCCTGACACCGAGAAGACACACAACTCGCTACTTCAACTCTGCAGAAGAAAAGTGCGATGTTGTCCTGACAACGGGTGGGCTCAAAGAGCACGGAGGTGGCTGGGAGGGTAAGGCGAAGATGGAAGGCATTGATGTGGATCTGGAAAAAGCGGAGAAACGTCTGGAAGTCAAAATTAYATATTTATTCGGAAGAAAGAAGTCTTTAGGACCACTCTAGCCGGGACAGAAGACATAAGGAAGAAGGAATGCGCAGAAAATCACAGGTATTGATAAAGATCAGAAGTCGGGTAGTAAGCAACAATGAAGAACAGGAAGAATGGATATTGAAGAAGAGAAAAATAATTGAGGGAATTGAGAAATGTTGAAGATACACAATTTTTCAGGTTAAATTTGAGGAGAAGGGTCGGAAAAAACAGACATGAATATGATGACCTGTAAAACATTAGCTAAGGTTCAACAACATTATTCTTGAAATTCCTTACTTTATATCGACGATTTCTCAATCATCTCTTCCAACTCGGTCTTCACACCCACACACGCTTTCAAAACGGATTGAGACGAATGCCCCCATTCCGGGAATCTCTCTTCACAGACGCCATGGTGGAACTCCGCAGTCTTGGCGGCAGCCTCAGATCTTCCCAAAACATCCTTCAAGCGTTTCTCTCGGAGTTTCGCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAACTCTGCAGAAGAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TCTGATCTTTATCAATACCTGTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCAACTCTGCAGAAGAAAAGTGCGATGTTGTCCTGACAACGGGTGGGCTCAAAGAGCACGGAGGTGGCTGGGAGGGTAAGGCGAAGATGGAAGGCATTGATGTGGATCTGGAAAAAGCGGAGAAACGTCTGGAAGTCAAAATTAGATATTTATTCGGAAGAAAGAAGTCTTTAGGACCACTCTAGCCGGGACAGAAGACATAAGGAAGAAGGAATGCGCAGAAAATCACAGGTATTGATAAAGATCAGA</canonical_amplicon>
		<polymorphic_amplicon>TTCAACTCTGCAGAAGAAAAGTGCGATGTTGTCCTGACAACGGGTGGGCTCAAAGAGCACGGAGGTGGCTGGGAGGGTAAGGCGAAGATGGAAGGCATTGATGTGGATCTGGAAAAAGCGGAGAAACGTCTGGAAGTCAAAATTAYATATTTATTCGGAAGAAAGAAGTCTTTAGGACCACTCTAGCCGGGACAGAAGACATAAGGAAGAAGGAATGCGCAGAAAATCACAGGTATTGATAAAGATCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31836</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>143243</contig_pos>
        <strand>-</strand>
        <context>TCGGAAGAAA[C/T/G/A]AAGTCTTTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T/G/A</alleles>
        <left_flank>AAAGCGGAGAAACGTCTGGAAGTCAAAATTAGATATTTATTCGGAAGAAA</left_flank>
        <right_flank>AAGTCTTTAGGACCACTCTAGCCGGGACAGAAGACATAAGGAAGAAGGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTGAAAATATCTGTGTTTTTCCAAAACTGAAGTTAAGACACATAAGTTTCCATCCATTGAAATTCCTAACACCTAAAATGCCTATATCTTTAAAGTCCTGCCCCTTCACAGTCCGTCTTCTCCTTTTTGTTCAGATTTATCTCTTCATCAGATTCTGCATCATTTTCTGACATTTTCAGTGGCCACTATTCCTTTCCCCTTGATTTCCTCTATGTGTCATTCTGCGCGCAGTCGGGTACTTGCCAACATTCAACCTCACACACAAGTACGAGTGTGCTAGACCCCAAAAAGAAGAGTTGCCTGACACCGAGAAGACACACAACTCGCTACTTCAACTCTGCAGAAGAAAAGTGCGATGTTGTCCTGACAACGGGTGGGCTCAAAGAGCACGGAGGTGGCTGGGAGGGTAAGGCGAAGATGGAAGGCATTGATGTGGATCTGGAAAAAGCGGAGAAACGTCTGGAAGTCAAAATTAGATATTTATTCGGAAGAAAGAAGTCTTTAGGACCACTCTAGCCGGGACAGAAGACATAAGGAAGAAGGAATGCGCAGAAAATCACAGGTATTGATAAAGATCAGAAGTCGGGTAGTAAGCAACAATGAAGAACAGGAAGAATGGATATTGAAGAAGAGAAAAATAATTGAGGGAATTGAGAAATGTTGAAGATACACAATTTTTCAGGTTAAATTTGAGGAGAAGGGTCGGAAAAAACAGACATGAATATGATGACCTGTAAAACATTAGCTAAGGTTCAACAACATTATTCTTGAAATTCCTTACTTTATATCGACGATTTCTCAATCATCTCTTCCAACTCGGTCTTCACACCCACACACGCTTTCAAAACGGATTGAGACGAATGCCCCCATTCCGGGAATCTCTCTTCACAGACGCCATGGTGGAACTCCGCAGTCTTGGCGGCAGCCTCAGATCTTCCCAAAACATCCTTCAAGCGTTTCTCTCGGAGTTTCGCCTTCTCTTTATGTTCTTGTAG</canonical>
            <polymorphic>TTTTTTTGAAAATATCTGTGTTTTTCCAAAACTGAAGTTAAGACACATAAGTTTCCATCCATTGAAATTCCTAACACCTAAAATGCCTATATCTTTAAAGTCCTGCCCCTTCACAGTCCGTCTTCTCCTTTTTGTTCAGATTTATCTCTTCATCAGATTCTGCATCATTTTCTGACATTTTCAGTGGCCACTATTCCTTTCCCCTTGATTTCCTCTATGTGTCATTCTGCGCGCAGTCGGGTACTTGCCAACATTCAACCTCACACACAAGTACGAGTGTGCTAGACCCCAAAAAGAAGAGTTGCCTGACACCGAGAAGACACACAACTCGCTACTTCAACTCTGCAGAAGAAAAGTGCGATGTTGTCCTGACAACGGGTGGGCTCAAAGAGCACGGAGGTGGCTGGGAGGGTAAGGCGAAGATGGAAGGCATTGATGTGGATCTGGAAAAAGCGGAGAAACGTCTGGAAGTCAAAATTAGATATTTATTCGGAAGAAAYAAGTCTTTAGGACCACTCTAGCCGGGACAGAAGACATAAGGAAGAAGGAATGCGCAGAAAATCACAGGTATTGATAAAGATCAGAAGTCGGGTAGTAAGCAACAATGAAGAACAGGAAGAATGGATATTGAAGAAGAGAAAAATAATTGAGGGAATTGAGAAATGTTGAAGATACACAATTTTTCAGGTTAAATTTGAGGAGAAGGGTCGGAAAAAACAGACATGAATATGATGACCTGTAAAACATTAGCTAAGGTTCAACAACATTATTCTTGAAATTCCTTACTTTATATCGACGATTTCTCAATCATCTCTTCCAACTCGGTCTTCACACCCACACACGCTTTCAAAACGGATTGAGACGAATGCCCCCATTCCGGGAATCTCTCTTCACAGACGCCATGGTGGAACTCCGCAGTCTTGGCGGCAGCCTCAGATCTTCCCAAAACATCCTTCAAGCGTTTCTCTCGGAGTTTCGCCTTCTCTTTATGTTCTTGTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAACTCTGCAGAAGAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TCTGATCTTTATCAATACCTGTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCAACTCTGCAGAAGAAAAGTGCGATGTTGTCCTGACAACGGGTGGGCTCAAAGAGCACGGAGGTGGCTGGGAGGGTAAGGCGAAGATGGAAGGCATTGATGTGGATCTGGAAAAAGCGGAGAAACGTCTGGAAGTCAAAATTAGATATTTATTCGGAAGAAAGAAGTCTTTAGGACCACTCTAGCCGGGACAGAAGACATAAGGAAGAAGGAATGCGCAGAAAATCACAGGTATTGATAAAGATCAGA</canonical_amplicon>
		<polymorphic_amplicon>TTCAACTCTGCAGAAGAAAAGTGCGATGTTGTCCTGACAACGGGTGGGCTCAAAGAGCACGGAGGTGGCTGGGAGGGTAAGGCGAAGATGGAAGGCATTGATGTGGATCTGGAAAAAGCGGAGAAACGTCTGGAAGTCAAAATTAGATATTTATTCGGAAGAAAYAAGTCTTTAGGACCACTCTAGCCGGGACAGAAGACATAAGGAAGAAGGAATGCGCAGAAAATCACAGGTATTGATAAAGATCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31837</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>216293</contig_pos>
        <strand>+</strand>
        <context>ATAATCAAAT[G/T]TTTCCACTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCCAGAAAGGCAACTCTTTGTGTTAGTCTTTGATTCTCCATAATCAAAT</left_flank>
        <right_flank>TTTCCACTCGTTCTCGGATTCTGAAATGGGTAATTAGTGCGTTAACTAGC</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTATCAGCTACATTTTATCAGTTAACACATTTTTGATATCTTTTATAGGAACCGAGATAATAACCCTTGGATGTGCTGCGCCGCCACTAGCTGAGCCGCCCCAAATCATCAAATTTGAACTCTTATATCTCATTCTCTGTGAGAGATATCAAAAATTTGTAAATTGATAAAATCTACCTGATTTTATGATAATCATTATGTAAGTTGACATTTTTTCCATATCTGTCACAGGAACCGAGATAATTCAGCTCAAAATTCATGTACTAATTGGGCTTCTGTTATAGCATTTTCGGTACATTATGTCAAAGTTACCGATTTAGGATACGTTTTAGGTCTTACTATAATTTAAACTAAATTAAAACCCTCACCTCTCACCACCACAAGAGCATTCAGTCTATCAATCTCTTTTGTGAAGCCGTCAAAATTCTCTTGATTTTTCCCGATTTTCTCCAGAAAGGCAACTCTTTGTGTTAGTCTTTGATTCTCCATAATCAAATTTTTCCACTCGTTCTCGGATTCTGAAATGGGTAATTAGTGCGTTAACTAGCAATTTTGTTAAAATTAAGTACCTGCGGGATTTTCGCTTCTATTCCTAACTAGGTATTCATAGCCAGATGACGCAGTTAGACGTGGGTCCATGATAATCTGAAGAATCAATATTTTGTAGAGAACAAGAGAAAAGGAGAGAAAAATGAAGCTAAGGGAGCAGGAATATTAACATAATCTTTCCCTTGGTGGTCGTTATCAGAATGATAAAAGAGGGTAATAAGGTATCGGCTATTTGCATAAAACTATGAACACATAAGAAGAAAAGAGACGAAGAGAATGACTCAAAGGAAATTGCCGACAGTGATAATGATAATGAAGTAAGATAGAATATTCATTACTGTTTCTGTGTGCTCCAAGGTTACATGCCGCTTTCTTACTTTAGTAGGCAAAAAATTGAAATTTCAGACAAAAAATATTTTCAGATAACTTTGCCAATGACCACCTACTGG</canonical>
            <polymorphic>TATTATCAGCTACATTTTATCAGTTAACACATTTTTGATATCTTTTATAGGAACCGAGATAATAACCCTTGGATGTGCTGCGCCGCCACTAGCTGAGCCGCCCCAAATCATCAAATTTGAACTCTTATATCTCATTCTCTGTGAGAGATATCAAAAATTTGTAAATTGATAAAATCTACCTGATTTTATGATAATCATTATGTAAGTTGACATTTTTTCCATATCTGTCACAGGAACCGAGATAATTCAGCTCAAAATTCATGTACTAATTGGGCTTCTGTTATAGCATTTTCGGTACATTATGTCAAAGTTACCGATTTAGGATACGTTTTAGGTCTTACTATAATTTAAACTAAATTAAAACCCTCACCTCTCACCACCACAAGAGCATTCAGTCTATCAATCTCTTTTGTGAAGCCGTCAAAATTCTCTTGATTTTTCCCGATTTTCTCCAGAAAGGCAACTCTTTGTGTTAGTCTTTGATTCTCCATAATCAAATKTTTCCACTCGTTCTCGGATTCTGAAATGGGTAATTAGTGCGTTAACTAGCAATTTTGTTAAAATTAAGTACCTGCGGGATTTTCGCTTCTATTCCTAACTAGGTATTCATAGCCAGATGACGCAGTTAGACGTGGGTCCATGATAATCTGAAGAATCAATATTTTGTAGAGAACAAGAGAAAAGGAGAGAAAAATGAAGCTAAGGGAGCAGGAATATTAACATAATCTTTCCCTTGGTGGTCGTTATCAGAATGATAAAAGAGGGTAATAAGGTATCGGCTATTTGCATAAAACTATGAACACATAAGAAGAAAAGAGACGAAGAGAATGACTCAAAGGAAATTGCCGACAGTGATAATGATAATGAAGTAAGATAGAATATTCATTACTGTTTCTGTGTGCTCCAAGGTTACATGCCGCTTTCTTACTTTAGTAGGCAAAAAATTGAAATTTCAGACAAAAAATATTTTCAGATAACTTTGCCAATGACCACCTACTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>452 169 113 100 72 52 42</canonical_bands>
                <polymorphic_bands>524 169 113 100 52 42</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>279 113 102 80 77 72 69 52 42 35 19 12 12 11 11 8 6</canonical_bands>
                <polymorphic_bands>279 113 107 102 80 77 69 52 42 19 12 12 11 11 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTAAATTAAAACCCTCACCTC</pcr_primer_p1>
		<pcr_primer_p2>AGTTAGGAATAGAAGCGAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACTAAATTAAAACCCTCACCTCTCACCACCACAAGAGCATTCAGTCTATCAATCTCTTTTGTGAAGCCGTCAAAATTCTCTTGATTTTTCCCGATTTTCTCCAGAAAGGCAACTCTTTGTGTTAGTCTTTGATTCTCCATAATCAAATTTTTCCACTCGTTCTCGGATTCTGAAATGGGTAATTAGTGCGTTAACTAGCAATTTTGTTAAAATTAAGTACCTGCGGGATTTTCGCTTCTATTCCTAACT</canonical_amplicon>
		<polymorphic_amplicon>AACTAAATTAAAACCCTCACCTCTCACCACCACAAGAGCATTCAGTCTATCAATCTCTTTTGTGAAGCCGTCAAAATTCTCTTGATTTTTCCCGATTTTCTCCAGAAAGGCAACTCTTTGTGTTAGTCTTTGATTCTCCATAATCAAATKTTTCCACTCGTTCTCGGATTCTGAAATGGGTAATTAGTGCGTTAACTAGCAATTTTGTTAAAATTAAGTACCTGCGGGATTTTCGCTTCTATTCCTAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31838</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>216808</contig_pos>
        <strand>+</strand>
        <context>AGGTCTCGAA[A/G]TTTGTTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTTTCAGATAACTTTGCCAATGACCACCTACTGGATGGAGGTCTCGAA</left_flank>
        <right_flank>TTTGTTTTTTGATTTTTCTGAAGTGTAAGTTTTTTTGGATTTATTAGAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATTCTGAAATGGGTAATTAGTGCGTTAACTAGCAATTTTGTTAAAATTAAGTACCTGCGGGATTTTCGCTTCTATTCCTAACTAGGTATTCATAGCCAGATGACGCAGTTAGACGTGGGTCCATGATAATCTGAAGAATCAATATTTTGTAGAGAACAAGAGAAAAGGAGAGAAAAATGAAGCTAAGGGAGCAGGAATATTAACATAATCTTTCCCTTGGTGGTCGTTATCAGAATGATAAAAGAGGGTAATAAGGTATCGGCTATTTGCATAAAACTATGAACACATAAGAAGAAAAGAGACGAAGAGAATGACTCAAAGGAAATTGCCGACAGTGATAATGATAATGAAGTAAGATAGAATATTCATTACTGTTTCTGTGTGCTCCAAGGTTACATGCCGCTTTCTTACTTTAGTAGGCAAAAAATTGAAATTTCAGACAAAAAATATTTTCAGATAACTTTGCCAATGACCACCTACTGGATGGAGGTCTCGAAATTTGTTTTTTGATTTTTCTGAAGTGTAAGTTTTTTTGGATTTATTAGAGTTTTAATATGATAGTAAAGTAAGACAAACTATCTAATACGGTTTCTTTGTGCTCCAACACTACATGCACAATCTCACAGCTCAGCCTACGCCCCGCCCCTTTTTTTACCGTAGTTGGACAACACCTGGGCTCTCTATTGCGCAACATAGTGCTACTGATGACCTTTTGCCCCAACGAACTACGCAGAAAATTATTGCGCAACAGATATTGGAGAGAGAGTGAGAGGATACTGAGAGGGTATAGGATAAAAAAACAGATCACGCTAAAGATATTCTGACAAGTAGCGAAAGGGGCCTATGGACTGAACGGTGTAGAAAAATAGTGATTTTCAACCTTAAATTGATAATCTGAATCAGAAAGCCTTGAAGAACTTTCGCTAAATTCAGAAAATAGAAACTAAAAACATCGCAAATGGAGAAAAGTGGCCAGGCACGGACATAAGATACGATGT</canonical>
            <polymorphic>GGATTCTGAAATGGGTAATTAGTGCGTTAACTAGCAATTTTGTTAAAATTAAGTACCTGCGGGATTTTCGCTTCTATTCCTAACTAGGTATTCATAGCCAGATGACGCAGTTAGACGTGGGTCCATGATAATCTGAAGAATCAATATTTTGTAGAGAACAAGAGAAAAGGAGAGAAAAATGAAGCTAAGGGAGCAGGAATATTAACATAATCTTTCCCTTGGTGGTCGTTATCAGAATGATAAAAGAGGGTAATAAGGTATCGGCTATTTGCATAAAACTATGAACACATAAGAAGAAAAGAGACGAAGAGAATGACTCAAAGGAAATTGCCGACAGTGATAATGATAATGAAGTAAGATAGAATATTCATTACTGTTTCTGTGTGCTCCAAGGTTACATGCCGCTTTCTTACTTTAGTAGGCAAAAAATTGAAATTTCAGACAAAAAATATTTTCAGATAACTTTGCCAATGACCACCTACTGGATGGAGGTCTCGAARTTTGTTTTTTGATTTTTCTGAAGTGTAAGTTTTTTTGGATTTATTAGAGTTTTAATATGATAGTAAAGTAAGACAAACTATCTAATACGGTTTCTTTGTGCTCCAACACTACATGCACAATCTCACAGCTCAGCCTACGCCCCGCCCCTTTTTTTACCGTAGTTGGACAACACCTGGGCTCTCTATTGCGCAACATAGTGCTACTGATGACCTTTTGCCCCAACGAACTACGCAGAAAATTATTGCGCAACAGATATTGGAGAGAGAGTGAGAGGATACTGAGAGGGTATAGGATAAAAAAACAGATCACGCTAAAGATATTCTGACAAGTAGCGAAAGGGGCCTATGGACTGAACGGTGTAGAAAAATAGTGATTTTCAACCTTAAATTGATAATCTGAATCAGAAAGCCTTGAAGAACTTTCGCTAAATTCAGAAAATAGAAACTAAAAACATCGCAAATGGAGAAAAGTGGCCAGGCACGGACATAAGATACGATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>433 430 72 65</canonical_bands>
                <polymorphic_bands>495 433 72</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>279 239 149 102 72 65 42 19 16 11 6</canonical_bands>
                <polymorphic_bands>304 279 149 102 72 42 19 16 11 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGTGTGCTCCAAGGTTAC</pcr_primer_p1>
		<pcr_primer_p2>GTGAGATTGTGCATGTAGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTGTGTGCTCCAAGGTTACATGCCGCTTTCTTACTTTAGTAGGCAAAAAATTGAAATTTCAGACAAAAAATATTTTCAGATAACTTTGCCAATGACCACCTACTGGATGGAGGTCTCGAAATTTGTTTTTTGATTTTTCTGAAGTGTAAGTTTTTTTGGATTTATTAGAGTTTTAATATGATAGTAAAGTAAGACAAACTATCTAATACGGTTTCTTTGTGCTCCAACACTACATGCACAATCTCAC</canonical_amplicon>
		<polymorphic_amplicon>TCTGTGTGCTCCAAGGTTACATGCCGCTTTCTTACTTTAGTAGGCAAAAAATTGAAATTTCAGACAAAAAATATTTTCAGATAACTTTGCCAATGACCACCTACTGGATGGAGGTCTCGAARTTTGTTTTTTGATTTTTCTGAAGTGTAAGTTTTTTTGGATTTATTAGAGTTTTAATATGATAGTAAAGTAAGACAAACTATCTAATACGGTTTCTTTGTGCTCCAACACTACATGCACAATCTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31839</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>237617</contig_pos>
        <strand></strand>
        <context>caatttatct[C/T]agtttctgtc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAATATAAATACAAAGCATCTGAACTATTAATGTTGATCCAATTTATCT</left_flank>
        <right_flank>AGTTTCTGTCAAAGATAAAAGTTGTCAACTAATAAATTGTTCATCATAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATATCTTTAGCAGGAACCGTGATAACTTGGCACTAAGTTTAAAGTGAAGTGACCCTTCTATTACAGGTCTTTCGGTAATTTTGTGAAACTTACATTGAGTTATATTTCTCTCCTGGCGCGCCATTTCCCTCTGCTCAATCAAGGTTCTCACAGCGGCGTCCATTTCTCAAAGCTCGATCTCCAATTCTAAAGTGATAAGGAATTAAATCTAGTGACCTTATTTCACATACCTTGGATTCGACCAGCTTGGTCCATAGCTTGACTGAAATTAAGCGTGAGCAATAGCAAATCGATAGAAACACCAGAAAAAAAATGATGATGACAATATAAAGTGAGGGCCAGGGAACGAGAAACCGTTTGTTTGCTTTGGTTCATGTAAATTTTTTGTTTTTTCTCACATATCAGAGTAGCGAGAGGGAAAGAGAAAAAGAGATTGGTATCACATGAAATAATATAAATACAAAGCATCTGAACTATTAATGTTGATCCAATTTATCTCAGTTTCTGTCAAAGATAAAAGTTGTCAACTAATAAATTGTTCATCATAATATCACAGACATTTTATCAATTGACACATTTTTGATACCTTAAATACACTGAGATGACTGAGATAATTGAGCTCAAAGTTGGTCACTTCTATTTTAGGTAATTTGAATCTGGTTTTTGTTATTTTACGGAACAATGTGTAATACACTTGTATGGATTCATTTTCAATTACAGTTTTTATGTCTGGTGCTATCAGGACCACAAAATCATAAACAGATTATCGATGACATTATAATTAGCACATGCTCCAATTCTTCATTTTCCAGTTGCTCCACCACTTGCTCCTTCTCCCGTTTGATTCCCAGCTTCAAATTGTTTTATGAGTGCACCAATTATCTCGTTGTTGGTTTTACAAACCTCTGAAAAGTCAGAATATCGTATTTACTCTCATAGAAGCCCACTTGCAGAGCTCAATTATCTCGGTTCCTATAAAAGATATCAAAAATCTGTCAA</canonical>
            <polymorphic>CATATCTTTAGCAGGAACCGTGATAACTTGGCACTAAGTTTAAAGTGAAGTGACCCTTCTATTACAGGTCTTTCGGTAATTTTGTGAAACTTACATTGAGTTATATTTCTCTCCTGGCGCGCCATTTCCCTCTGCTCAATCAAGGTTCTCACAGCGGCGTCCATTTCTCAAAGCTCGATCTCCAATTCTAAAGTGATAAGGAATTAAATCTAGTGACCTTATTTCACATACCTTGGATTCGACCAGCTTGGTCCATAGCTTGACTGAAATTAAGCGTGAGCAATAGCAAATCGATAGAAACACCAGAAAAAAAATGATGATGACAATATAAAGTGAGGGCCAGGGAACGAGAAACCGTTTGTTTGCTTTGGTTCATGTAAATTTTTTGTTTTTTCTCACATATCAGAGTAGCGAGAGGGAAAGAGAAAAAGAGATTGGTATCACATGAAATAATATAAATACAAAGCATCTGAACTATTAATGTTGATCCAATTTATCTYAGTTTCTGTCAAAGATAAAAGTTGTCAACTAATAAATTGTTCATCATAATATCACAGACATTTTATCAATTGACACATTTTTGATACCTTAAATACACTGAGATGACTGAGATAATTGAGCTCAAAGTTGGTCACTTCTATTTTAGGTAATTTGAATCTGGTTTTTGTTATTTTACGGAACAATGTGTAATACACTTGTATGGATTCATTTTCAATTACAGTTTTTATGTCTGGTGCTATCAGGACCACAAAATCATAAACAGATTATCGATGACATTATAATTAGCACATGCTCCAATTCTTCATTTTCCAGTTGCTCCACCACTTGCTCCTTCTCCCGTTTGATTCCCAGCTTCAAATTGTTTTATGAGTGCACCAATTATCTCGTTGTTGGTTTTACAAACCTCTGAAAAGTCAGAATATCGTATTTACTCTCATAGAAGCCCACTTGCAGAGCTCAATTATCTCGGTTCCTATAAAAGATATCAAAAATCTGTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAGNNNCTG</site>
                <isoschizomers>
                    <enzyme>AlwNI</enzyme>
                    <enzyme>CaiI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGCGAGAGGGAAAGAGAA</pcr_primer_p1>
		<pcr_primer_p2>AAATAACAAAAACCAGATTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>266</pcr_amplicon_size>
		<canonical_amplicon>GTAGCGAGAGGGAAAGAGAAAAAGAGATTGGTATCACATGAAATAATATAAATACAAAGCATCTGAACTATTAATGTTGATCCAATTTATCTCAGTTTCTGTCAAAGATAAAAGTTGTCAACTAATAAATTGTTCATCATAATATCACAGACATTTTATCAATTGACACATTTTTGATACCTTAAATACACTGAGATGACTGAGATAATTGAGCTCAAAGTTGGTCACTTCTATTTTAGGTAATTTGAATCTGGTTTTTGTTATTT</canonical_amplicon>
		<polymorphic_amplicon>GTAGCGAGAGGGAAAGAGAAAAAGAGATTGGTATCACATGAAATAATATAAATACAAAGCATCTGAACTATTAATGTTGATCCAATTTATCTYAGTTTCTGTCAAAGATAAAAGTTGTCAACTAATAAATTGTTCATCATAATATCACAGACATTTTATCAATTGACACATTTTTGATACCTTAAATACACTGAGATGACTGAGATAATTGAGCTCAAAGTTGGTCACTTCTATTTTAGGTAATTTGAATCTGGTTTTTGTTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31840</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>241253</contig_pos>
        <strand></strand>
        <context>tcatctttta[G/A]cccaattatc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCTGAAAAAGCAACATTTTAAATCGTGATTAAACCCGCCATCATCTTTTA</left_flank>
        <right_flank>CCCAATTATCTAAGTTCTTGTGAAAGATATCAAAATTTCGTTAACTAAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTCCGTCAACTTGCTCATCTTCCATATACTGACCCTGCTCATTATCTTCCTTTTCTTCTTCTTCCTCATCTTCATACCCTTCACCTTCCTCCCCATCCTCATATTGTTCCTCCTCTTCCATCGCCTCTTCCACCACCACATCCTCCAAAAGTTGTGCGTTTTCTATTCGCAGAGCATTATTCTCTACTGGAAATGCACTTTTTTTCGAATAAAACTGTCTCAAACATACTCAAAACCTTGGCCAACTCCAACGACATGGCCTGCATTTTCTGATGCAGGTCTTCCAGAGCTGTCGTTTTTTCTTTCGCTTCTAACTCTGAAAAAACATAATTATGAATTTCAATGATATTATTGAAACTCACTCAATCGATCGTTCTCTGTTTGCCAGGTACTTGCGAATTTCAGATATTCCTTTGTGACTCTTTCGAGCTCTTTTTTGAGATAGTCATCTGAAAAAGCAACATTTTAAATCGTGATTAAACCCGCCATCATCTTTTAGCCCAATTATCTAAGTTCTTGTGAAAGATATCAAAATTTCGTTAACTAAAAAAATATAGCTGATAACATGATCGCCAATTTATCAATTGACAAATTTTTAATGTCTTTTACAGTAATCGAGTTAATTATCTCAAAGTGGTCGGTTTGAATGCGCTTCTATTAGAAAAATTACGGTATTTTGAATTTGACCCACTTTCGATGGCTTCTGGAGACTTGACCATGTTGGACGACACCTTGAAAGACGAAGGGAAAATTCTGAGAAATCTTAATCAGGGATACGGTAAAGAGGAAGGAGAAGCTGCATAAAAAATAAGAAGGGCAGGCAGAAGCATGGTCATAACCAGAAAGTTTCAGAAGTAATGAGCAATACAACAGTTTGAAAACTAATAATTAGTTAATGGGCAAACGTTGGGCACATTTCCCCAATCCCCACCAAATAAGGATGGACCTCCCCACTGTCAAATTTGACTCAATTTATCTCGGTTCCTCTCAAAGAAATCA</canonical>
            <polymorphic>GCTCCGTCAACTTGCTCATCTTCCATATACTGACCCTGCTCATTATCTTCCTTTTCTTCTTCTTCCTCATCTTCATACCCTTCACCTTCCTCCCCATCCTCATATTGTTCCTCCTCTTCCATCGCCTCTTCCACCACCACATCCTCCAAAAGTTGTGCGTTTTCTATTCGCAGAGCATTATTCTCTACTGGAAATGCACTTTTTTTCGAATAAAACTGTCTCAAACATACTCAAAACCTTGGCCAACTCCAACGACATGGCCTGCATTTTCTGATGCAGGTCTTCCAGAGCTGTCGTTTTTTCTTTCGCTTCTAACTCTGAAAAAACATAATTATGAATTTCAATGATATTATTGAAACTCACTCAATCGATCGTTCTCTGTTTGCCAGGTACTTGCGAATTTCAGATATTCCTTTGTGACTCTTTCGAGCTCTTTTTTGAGATAGTCATCTGAAAAAGCAACATTTTAAATCGTGATTAAACCCGCCATCATCTTTTARCCCAATTATCTAAGTTCTTGTGAAAGATATCAAAATTTCGTTAACTAAAAAAATATAGCTGATAACATGATCGCCAATTTATCAATTGACAAATTTTTAATGTCTTTTACAGTAATCGAGTTAATTATCTCAAAGTGGTCGGTTTGAATGCGCTTCTATTAGAAAAATTACGGTATTTTGAATTTGACCCACTTTCGATGGCTTCTGGAGACTTGACCATGTTGGACGACACCTTGAAAGACGAAGGGAAAATTCTGAGAAATCTTAATCAGGGATACGGTAAAGAGGAAGGAGAAGCTGCATAAAAAATAAGAAGGGCAGGCAGAAGCATGGTCATAACCAGAAAGTTTCAGAAGTAATGAGCAATACAACAGTTTGAAAACTAATAATTAGTTAATGGGCAAACGTTGGGCACATTTCCCCAATCCCCACCAAATAAGGATGGACCTCCCCACTGTCAAATTTGACTCAATTTATCTCGGTTCCTCTCAAAGAAATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>242 203 143 140 96 70 58 30 18</canonical_bands>
                <polymorphic_bands>242 203 143 140 128 96 30 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGTCATCTGAAAAAGCAACATT</pcr_primer_p1>
		<pcr_primer_p2>AAAGTGGGTCAAATTCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAGTCATCTGAAAAAGCAACATTTTAAATCGTGATTAAACCCGCCATCATCTTTTAGCCCAATTATCTAAGTTCTTGTGAAAGATATCAAAATTTCGTTAACTAAAAAAATATAGCTGATAACATGATCGCCAATTTATCAATTGACAAATTTTTAATGTCTTTTACAGTAATCGAGTTAATTATCTCAAAGTGGTCGGTTTGAATGCGCTTCTATTAGAAAAATTACGGTATTTTGAATTTGACCCACTTT</canonical_amplicon>
		<polymorphic_amplicon>TAGTCATCTGAAAAAGCAACATTTTAAATCGTGATTAAACCCGCCATCATCTTTTARCCCAATTATCTAAGTTCTTGTGAAAGATATCAAAATTTCGTTAACTAAAAAAATATAGCTGATAACATGATCGCCAATTTATCAATTGACAAATTTTTAATGTCTTTTACAGTAATCGAGTTAATTATCTCAAAGTGGTCGGTTTGAATGCGCTTCTATTAGAAAAATTACGGTATTTTGAATTTGACCCACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31841</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>241267</contig_pos>
        <strand></strand>
        <context>aattatctaa[G/A]ttcttgtgaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTTTAAATCGTGATTAAACCCGCCATCATCTTTTAGCCCAATTATCTAA</left_flank>
        <right_flank>TTCTTGTGAAAGATATCAAAATTTCGTTAACTAAAAAAATATAGCTGATA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCATCTTCCATATACTGACCCTGCTCATTATCTTCCTTTTCTTCTTCTTCCTCATCTTCATACCCTTCACCTTCCTCCCCATCCTCATATTGTTCCTCCTCTTCCATCGCCTCTTCCACCACCACATCCTCCAAAAGTTGTGCGTTTTCTATTCGCAGAGCATTATTCTCTACTGGAAATGCACTTTTTTTCGAATAAAACTGTCTCAAACATACTCAAAACCTTGGCCAACTCCAACGACATGGCCTGCATTTTCTGATGCAGGTCTTCCAGAGCTGTCGTTTTTTCTTTCGCTTCTAACTCTGAAAAAACATAATTATGAATTTCAATGATATTATTGAAACTCACTCAATCGATCGTTCTCTGTTTGCCAGGTACTTGCGAATTTCAGATATTCCTTTGTGACTCTTTCGAGCTCTTTTTTGAGATAGTCATCTGAAAAAGCAACATTTTAAATCGTGATTAAACCCGCCATCATCTTTTAGCCCAATTATCTAAGTTCTTGTGAAAGATATCAAAATTTCGTTAACTAAAAAAATATAGCTGATAACATGATCGCCAATTTATCAATTGACAAATTTTTAATGTCTTTTACAGTAATCGAGTTAATTATCTCAAAGTGGTCGGTTTGAATGCGCTTCTATTAGAAAAATTACGGTATTTTGAATTTGACCCACTTTCGATGGCTTCTGGAGACTTGACCATGTTGGACGACACCTTGAAAGACGAAGGGAAAATTCTGAGAAATCTTAATCAGGGATACGGTAAAGAGGAAGGAGAAGCTGCATAAAAAATAAGAAGGGCAGGCAGAAGCATGGTCATAACCAGAAAGTTTCAGAAGTAATGAGCAATACAACAGTTTGAAAACTAATAATTAGTTAATGGGCAAACGTTGGGCACATTTCCCCAATCCCCACCAAATAAGGATGGACCTCCCCACTGTCAAATTTGACTCAATTTATCTCGGTTCCTCTCAAAGAAATCAGGAATATGTCAACT</canonical>
            <polymorphic>CTCATCTTCCATATACTGACCCTGCTCATTATCTTCCTTTTCTTCTTCTTCCTCATCTTCATACCCTTCACCTTCCTCCCCATCCTCATATTGTTCCTCCTCTTCCATCGCCTCTTCCACCACCACATCCTCCAAAAGTTGTGCGTTTTCTATTCGCAGAGCATTATTCTCTACTGGAAATGCACTTTTTTTCGAATAAAACTGTCTCAAACATACTCAAAACCTTGGCCAACTCCAACGACATGGCCTGCATTTTCTGATGCAGGTCTTCCAGAGCTGTCGTTTTTTCTTTCGCTTCTAACTCTGAAAAAACATAATTATGAATTTCAATGATATTATTGAAACTCACTCAATCGATCGTTCTCTGTTTGCCAGGTACTTGCGAATTTCAGATATTCCTTTGTGACTCTTTCGAGCTCTTTTTTGAGATAGTCATCTGAAAAAGCAACATTTTAAATCGTGATTAAACCCGCCATCATCTTTTAGCCCAATTATCTAARTTCTTGTGAAAGATATCAAAATTTCGTTAACTAAAAAAATATAGCTGATAACATGATCGCCAATTTATCAATTGACAAATTTTTAATGTCTTTTACAGTAATCGAGTTAATTATCTCAAAGTGGTCGGTTTGAATGCGCTTCTATTAGAAAAATTACGGTATTTTGAATTTGACCCACTTTCGATGGCTTCTGGAGACTTGACCATGTTGGACGACACCTTGAAAGACGAAGGGAAAATTCTGAGAAATCTTAATCAGGGATACGGTAAAGAGGAAGGAGAAGCTGCATAAAAAATAAGAAGGGCAGGCAGAAGCATGGTCATAACCAGAAAGTTTCAGAAGTAATGAGCAATACAACAGTTTGAAAACTAATAATTAGTTAATGGGCAAACGTTGGGCACATTTCCCCAATCCCCACCAAATAAGGATGGACCTCCCCACTGTCAAATTTGACTCAATTTATCTCGGTTCCTCTCAAAGAAATCAGGAATATGTCAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>496 259 245</canonical_bands>
                <polymorphic_bands>741 259</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGTCATCTGAAAAAGCAACATT</pcr_primer_p1>
		<pcr_primer_p2>AAAGTGGGTCAAATTCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAGTCATCTGAAAAAGCAACATTTTAAATCGTGATTAAACCCGCCATCATCTTTTAGCCCAATTATCTAAGTTCTTGTGAAAGATATCAAAATTTCGTTAACTAAAAAAATATAGCTGATAACATGATCGCCAATTTATCAATTGACAAATTTTTAATGTCTTTTACAGTAATCGAGTTAATTATCTCAAAGTGGTCGGTTTGAATGCGCTTCTATTAGAAAAATTACGGTATTTTGAATTTGACCCACTTT</canonical_amplicon>
		<polymorphic_amplicon>TAGTCATCTGAAAAAGCAACATTTTAAATCGTGATTAAACCCGCCATCATCTTTTAGCCCAATTATCTAARTTCTTGTGAAAGATATCAAAATTTCGTTAACTAAAAAAATATAGCTGATAACATGATCGCCAATTTATCAATTGACAAATTTTTAATGTCTTTTACAGTAATCGAGTTAATTATCTCAAAGTGGTCGGTTTGAATGCGCTTCTATTAGAAAAATTACGGTATTTTGAATTTGACCCACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31842</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>258936</contig_pos>
        <strand></strand>
        <context>ctcgagagcc[C/T]gacttccaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATGCCGACATATACCCTTTGTGCTCTGAGCATCATAACTCGAGAGCC</left_flank>
        <right_flank>GACTTCCAAAATTCTGGAAAAAAGTTTTTTTTTTGAATTCTCTGACCACT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGCAAAACAACGATTCATAGTAATCAAACATCTAATTTATAAAACAAAGTGAATTTAGATTTATTGAGATTGGGAAAAAGTAGAGAAATGACACAGTCAAAAAACAACAGAAAAAGCAGGTTCGGAAAAATTCAATGATTCCATATACAAAAAAAGATTATATGAAAATTCAAATATCAATTGTCAGCATGTGCTCTTTTTCTGCTGCTTGTCATTCTTAACTCATACTTTAGACTGGCGATTTTCCGTTCCAGGGTGGTGTTCTCGGCTGAAAATTGCGGGAAGTTTGGGGGGGGGGGCTATTTTGAATCTAAACTACTGGCCAATAGGGAATATTTTCAGTTGAAAATTGTCAATTCCGAATTCGTTAAAACTTGATAAACAACTCAAAACACATCATTTGTGTAATTTTGAGCATCAAAAATAAATTTTCAGTTGAGTTATGGCAAAAATGCCGACATATACCCTTTGTGCTCTGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTGGAAAAAAGTTTTTTTTTTGAATTCTCTGACCACTGTTACATCTGAAACTGCTCTGAAAATTCTGAAAGTGAGAAATTTTCAAAAAACCGATTTTTATGTTTTTGGATTTTACAGCTATTTCCATGCAAAATTTCAAGTCAATCGAGTAATTTTGAACAAAGTTATGTACCGTAGGTATGTTCAAAAAAAAAAAATTCTCCTCACCACTTCTCGCCATTGTATCTTTTCCTAGCGCTTCAAAACAAAACTAACCAATAACAGCGTTTTCGGCTTTCTTGAGGATCTCAAGTTGACTTTTCTGTTTTTCCTCTATCCTATCCAGGCACTCAACTCTTCTAGTGAGCTCGGCAGCATATATGATGGATGCGTTGACTTTTTCTTAAATATTTCAATGAAAAGTAAACAAATTCAATAACTCACTAACCCTCGTGTTCCCTACGAACTTTTTCCAGAGTTTTGGCATGTCTCTCCGGATCTGAAATTG</canonical>
            <polymorphic>TCGCAAAACAACGATTCATAGTAATCAAACATCTAATTTATAAAACAAAGTGAATTTAGATTTATTGAGATTGGGAAAAAGTAGAGAAATGACACAGTCAAAAAACAACAGAAAAAGCAGGTTCGGAAAAATTCAATGATTCCATATACAAAAAAAGATTATATGAAAATTCAAATATCAATTGTCAGCATGTGCTCTTTTTCTGCTGCTTGTCATTCTTAACTCATACTTTAGACTGGCGATTTTCCGTTCCAGGGTGGTGTTCTCGGCTGAAAATTGCGGGAAGTTTGGGGGGGGGGGCTATTTTGAATCTAAACTACTGGCCAATAGGGAATATTTTCAGTTGAAAATTGTCAATTCCGAATTCGTTAAAACTTGATAAACAACTCAAAACACATCATTTGTGTAATTTTGAGCATCAAAAATAAATTTTCAGTTGAGTTATGGCAAAAATGCCGACATATACCCTTTGTGCTCTGAGCATCATAACTCGAGAGCCYGACTTCCAAAATTCTGGAAAAAAGTTTTTTTTTTGAATTCTCTGACCACTGTTACATCTGAAACTGCTCTGAAAATTCTGAAAGTGAGAAATTTTCAAAAAACCGATTTTTATGTTTTTGGATTTTACAGCTATTTCCATGCAAAATTTCAAGTCAATCGAGTAATTTTGAACAAAGTTATGTACCGTAGGTATGTTCAAAAAAAAAAAATTCTCCTCACCACTTCTCGCCATTGTATCTTTTCCTAGCGCTTCAAAACAAAACTAACCAATAACAGCGTTTTCGGCTTTCTTGAGGATCTCAAGTTGACTTTTCTGTTTTTCCTCTATCCTATCCAGGCACTCAACTCTTCTAGTGAGCTCGGCAGCATATATGATGGATGCGTTGACTTTTTCTTAAATATTTCAATGAAAAGTAAACAAATTCAATAACTCACTAACCCTCGTGTTCCCTACGAACTTTTTCCAGAGTTTTGGCATGTCTCTCCGGATCTGAAATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>499 362 139</canonical_bands>
                <polymorphic_bands>861 139</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>362 280 196 139 23</canonical_bands>
                <polymorphic_bands>385 280 196 139</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAAAACACATCATTTGTGTAA</pcr_primer_p1>
		<pcr_primer_p2>AATAGCTGTAAAATCCAAAAACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCAAAACACATCATTTGTGTAATTTTGAGCATCAAAAATAAATTTTCAGTTGAGTTATGGCAAAAATGCCGACATATACCCTTTGTGCTCTGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTGGAAAAAAGTTTTTTTTTTGAATTCTCTGACCACTGTTACATCTGAAACTGCTCTGAAAATTCTGAAAGTGAGAAATTTTCAAAAAACCGATTTTTATGTTTTTGGATTTTACAGCTATT</canonical_amplicon>
		<polymorphic_amplicon>CTCAAAACACATCATTTGTGTAATTTTGAGCATCAAAAATAAATTTTCAGTTGAGTTATGGCAAAAATGCCGACATATACCCTTTGTGCTCTGAGCATCATAACTCGAGAGCCYGACTTCCAAAATTCTGGAAAAAAGTTTTTTTTTTGAATTCTCTGACCACTGTTACATCTGAAACTGCTCTGAAAATTCTGAAAGTGAGAAATTTTCAAAAAACCGATTTTTATGTTTTTGGATTTTACAGCTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31843</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>258967</contig_pos>
        <strand>+</strand>
        <context>AAAGTTTTTT[A/T]TTTGAATTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCATCATAACTCGAGAGCCCGACTTCCAAAATTCTGGAAAAAAGTTTTTT</left_flank>
        <right_flank>TTTGAATTCTCTGACCACTGTTACATCTGAAACTGCTCTGAAAATTCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAATTTATAAAACAAAGTGAATTTAGATTTATTGAGATTGGGAAAAAGTAGAGAAATGACACAGTCAAAAAACAACAGAAAAAGCAGGTTCGGAAAAATTCAATGATTCCATATACAAAAAAAGATTATATGAAAATTCAAATATCAATTGTCAGCATGTGCTCTTTTTCTGCTGCTTGTCATTCTTAACTCATACTTTAGACTGGCGATTTTCCGTTCCAGGGTGGTGTTCTCGGCTGAAAATTGCGGGAAGTTTGGGGGGGGGGGCTATTTTGAATCTAAACTACTGGCCAATAGGGAATATTTTCAGTTGAAAATTGTCAATTCCGAATTCGTTAAAACTTGATAAACAACTCAAAACACATCATTTGTGTAATTTTGAGCATCAAAAATAAATTTTCAGTTGAGTTATGGCAAAAATGCCGACATATACCCTTTGTGCTCTGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTGGAAAAAAGTTTTTTTTTTGAATTCTCTGACCACTGTTACATCTGAAACTGCTCTGAAAATTCTGAAAGTGAGAAATTTTCAAAAAACCGATTTTTATGTTTTTGGATTTTACAGCTATTTCCATGCAAAATTTCAAGTCAATCGAGTAATTTTGAACAAAGTTATGTACCGTAGGTATGTTCAAAAAAAAAAAATTCTCCTCACCACTTCTCGCCATTGTATCTTTTCCTAGCGCTTCAAAACAAAACTAACCAATAACAGCGTTTTCGGCTTTCTTGAGGATCTCAAGTTGACTTTTCTGTTTTTCCTCTATCCTATCCAGGCACTCAACTCTTCTAGTGAGCTCGGCAGCATATATGATGGATGCGTTGACTTTTTCTTAAATATTTCAATGAAAAGTAAACAAATTCAATAACTCACTAACCCTCGTGTTCCCTACGAACTTTTTCCAGAGTTTTGGCATGTCTCTCCGGATCTGAAATTGAAAAAAATCAGTGTTTTTACAGCTGGAAAAT</canonical>
            <polymorphic>TCTAATTTATAAAACAAAGTGAATTTAGATTTATTGAGATTGGGAAAAAGTAGAGAAATGACACAGTCAAAAAACAACAGAAAAAGCAGGTTCGGAAAAATTCAATGATTCCATATACAAAAAAAGATTATATGAAAATTCAAATATCAATTGTCAGCATGTGCTCTTTTTCTGCTGCTTGTCATTCTTAACTCATACTTTAGACTGGCGATTTTCCGTTCCAGGGTGGTGTTCTCGGCTGAAAATTGCGGGAAGTTTGGGGGGGGGGGCTATTTTGAATCTAAACTACTGGCCAATAGGGAATATTTTCAGTTGAAAATTGTCAATTCCGAATTCGTTAAAACTTGATAAACAACTCAAAACACATCATTTGTGTAATTTTGAGCATCAAAAATAAATTTTCAGTTGAGTTATGGCAAAAATGCCGACATATACCCTTTGTGCTCTGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTGGAAAAAAGTTTTTTWTTTGAATTCTCTGACCACTGTTACATCTGAAACTGCTCTGAAAATTCTGAAAGTGAGAAATTTTCAAAAAACCGATTTTTATGTTTTTGGATTTTACAGCTATTTCCATGCAAAATTTCAAGTCAATCGAGTAATTTTGAACAAAGTTATGTACCGTAGGTATGTTCAAAAAAAAAAAATTCTCCTCACCACTTCTCGCCATTGTATCTTTTCCTAGCGCTTCAAAACAAAACTAACCAATAACAGCGTTTTCGGCTTTCTTGAGGATCTCAAGTTGACTTTTCTGTTTTTCCTCTATCCTATCCAGGCACTCAACTCTTCTAGTGAGCTCGGCAGCATATATGATGGATGCGTTGACTTTTTCTTAAATATTTCAATGAAAAGTAAACAAATTCAATAACTCACTAACCCTCGTGTTCCCTACGAACTTTTTCCAGAGTTTTGGCATGTCTCTCCGGATCTGAAATTGAAAAAAATCAGTGTTTTTACAGCTGGAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAAAACACATCATTTGTGTAA</pcr_primer_p1>
		<pcr_primer_p2>AATAGCTGTAAAATCCAAAAACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCAAAACACATCATTTGTGTAATTTTGAGCATCAAAAATAAATTTTCAGTTGAGTTATGGCAAAAATGCCGACATATACCCTTTGTGCTCTGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTGGAAAAAAGTTTTTTTTTTGAATTCTCTGACCACTGTTACATCTGAAACTGCTCTGAAAATTCTGAAAGTGAGAAATTTTCAAAAAACCGATTTTTATGTTTTTGGATTTTACAGCTATT</canonical_amplicon>
		<polymorphic_amplicon>CTCAAAACACATCATTTGTGTAATTTTGAGCATCAAAAATAAATTTTCAGTTGAGTTATGGCAAAAATGCCGACATATACCCTTTGTGCTCTGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTGGAAAAAAGTTTTTTWTTTGAATTCTCTGACCACTGTTACATCTGAAACTGCTCTGAAAATTCTGAAAGTGAGAAATTTTCAAAAAACCGATTTTTATGTTTTTGGATTTTACAGCTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31844</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>258983</contig_pos>
        <strand>+</strand>
        <context>ATTCTCTGAC[A/C]ACTGTTACAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCCCGACTTCCAAAATTCTGGAAAAAAGTTTTTTTTTTGAATTCTCTGAC</left_flank>
        <right_flank>ACTGTTACATCTGAAACTGCTCTGAAAATTCTGAAAGTGAGAAATTTTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTGAATTTAGATTTATTGAGATTGGGAAAAAGTAGAGAAATGACACAGTCAAAAAACAACAGAAAAAGCAGGTTCGGAAAAATTCAATGATTCCATATACAAAAAAAGATTATATGAAAATTCAAATATCAATTGTCAGCATGTGCTCTTTTTCTGCTGCTTGTCATTCTTAACTCATACTTTAGACTGGCGATTTTCCGTTCCAGGGTGGTGTTCTCGGCTGAAAATTGCGGGAAGTTTGGGGGGGGGGGCTATTTTGAATCTAAACTACTGGCCAATAGGGAATATTTTCAGTTGAAAATTGTCAATTCCGAATTCGTTAAAACTTGATAAACAACTCAAAACACATCATTTGTGTAATTTTGAGCATCAAAAATAAATTTTCAGTTGAGTTATGGCAAAAATGCCGACATATACCCTTTGTGCTCTGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTGGAAAAAAGTTTTTTTTTTGAATTCTCTGACCACTGTTACATCTGAAACTGCTCTGAAAATTCTGAAAGTGAGAAATTTTCAAAAAACCGATTTTTATGTTTTTGGATTTTACAGCTATTTCCATGCAAAATTTCAAGTCAATCGAGTAATTTTGAACAAAGTTATGTACCGTAGGTATGTTCAAAAAAAAAAAATTCTCCTCACCACTTCTCGCCATTGTATCTTTTCCTAGCGCTTCAAAACAAAACTAACCAATAACAGCGTTTTCGGCTTTCTTGAGGATCTCAAGTTGACTTTTCTGTTTTTCCTCTATCCTATCCAGGCACTCAACTCTTCTAGTGAGCTCGGCAGCATATATGATGGATGCGTTGACTTTTTCTTAAATATTTCAATGAAAAGTAAACAAATTCAATAACTCACTAACCCTCGTGTTCCCTACGAACTTTTTCCAGAGTTTTGGCATGTCTCTCCGGATCTGAAATTGAAAAAAATCAGTGTTTTTACAGCTGGAAAATTCTTACGTCTCTCAAT</canonical>
            <polymorphic>AAGTGAATTTAGATTTATTGAGATTGGGAAAAAGTAGAGAAATGACACAGTCAAAAAACAACAGAAAAAGCAGGTTCGGAAAAATTCAATGATTCCATATACAAAAAAAGATTATATGAAAATTCAAATATCAATTGTCAGCATGTGCTCTTTTTCTGCTGCTTGTCATTCTTAACTCATACTTTAGACTGGCGATTTTCCGTTCCAGGGTGGTGTTCTCGGCTGAAAATTGCGGGAAGTTTGGGGGGGGGGGCTATTTTGAATCTAAACTACTGGCCAATAGGGAATATTTTCAGTTGAAAATTGTCAATTCCGAATTCGTTAAAACTTGATAAACAACTCAAAACACATCATTTGTGTAATTTTGAGCATCAAAAATAAATTTTCAGTTGAGTTATGGCAAAAATGCCGACATATACCCTTTGTGCTCTGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTGGAAAAAAGTTTTTTTTTTGAATTCTCTGACMACTGTTACATCTGAAACTGCTCTGAAAATTCTGAAAGTGAGAAATTTTCAAAAAACCGATTTTTATGTTTTTGGATTTTACAGCTATTTCCATGCAAAATTTCAAGTCAATCGAGTAATTTTGAACAAAGTTATGTACCGTAGGTATGTTCAAAAAAAAAAAATTCTCCTCACCACTTCTCGCCATTGTATCTTTTCCTAGCGCTTCAAAACAAAACTAACCAATAACAGCGTTTTCGGCTTTCTTGAGGATCTCAAGTTGACTTTTCTGTTTTTCCTCTATCCTATCCAGGCACTCAACTCTTCTAGTGAGCTCGGCAGCATATATGATGGATGCGTTGACTTTTTCTTAAATATTTCAATGAAAAGTAAACAAATTCAATAACTCACTAACCCTCGTGTTCCCTACGAACTTTTTCCAGAGTTTTGGCATGTCTCTCCGGATCTGAAATTGAAAAAAATCAGTGTTTTTACAGCTGGAAAATTCTTACGTCTCTCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>133 133 119 100 78 74 68 66 65 42 38 34 16 12 11 5 3 3</canonical_bands>
                <polymorphic_bands>133 133 119 112 100 78 68 66 65 42 34 16 12 11 5 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAAAACACATCATTTGTGTAA</pcr_primer_p1>
		<pcr_primer_p2>AATAGCTGTAAAATCCAAAAACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCAAAACACATCATTTGTGTAATTTTGAGCATCAAAAATAAATTTTCAGTTGAGTTATGGCAAAAATGCCGACATATACCCTTTGTGCTCTGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTGGAAAAAAGTTTTTTTTTTGAATTCTCTGACCACTGTTACATCTGAAACTGCTCTGAAAATTCTGAAAGTGAGAAATTTTCAAAAAACCGATTTTTATGTTTTTGGATTTTACAGCTATT</canonical_amplicon>
		<polymorphic_amplicon>CTCAAAACACATCATTTGTGTAATTTTGAGCATCAAAAATAAATTTTCAGTTGAGTTATGGCAAAAATGCCGACATATACCCTTTGTGCTCTGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTGGAAAAAAGTTTTTTTTTTGAATTCTCTGACMACTGTTACATCTGAAACTGCTCTGAAAATTCTGAAAGTGAGAAATTTTCAAAAAACCGATTTTTATGTTTTTGGATTTTACAGCTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31845</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>259073</contig_pos>
        <strand>+</strand>
        <context>ACAGCTATTT[C/T]CATGCAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAATTTTCAAAAAACCGATTTTTATGTTTTTGGATTTTACAGCTATTT</left_flank>
        <right_flank>CATGCAAAATTTCAAGTCAATCGAGTAATTTTGAACAAAGTTATGTACCG</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTCCATATACAAAAAAAGATTATATGAAAATTCAAATATCAATTGTCAGCATGTGCTCTTTTTCTGCTGCTTGTCATTCTTAACTCATACTTTAGACTGGCGATTTTCCGTTCCAGGGTGGTGTTCTCGGCTGAAAATTGCGGGAAGTTTGGGGGGGGGGGCTATTTTGAATCTAAACTACTGGCCAATAGGGAATATTTTCAGTTGAAAATTGTCAATTCCGAATTCGTTAAAACTTGATAAACAACTCAAAACACATCATTTGTGTAATTTTGAGCATCAAAAATAAATTTTCAGTTGAGTTATGGCAAAAATGCCGACATATACCCTTTGTGCTCTGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTGGAAAAAAGTTTTTTTTTTGAATTCTCTGACCACTGTTACATCTGAAACTGCTCTGAAAATTCTGAAAGTGAGAAATTTTCAAAAAACCGATTTTTATGTTTTTGGATTTTACAGCTATTTCCATGCAAAATTTCAAGTCAATCGAGTAATTTTGAACAAAGTTATGTACCGTAGGTATGTTCAAAAAAAAAAAATTCTCCTCACCACTTCTCGCCATTGTATCTTTTCCTAGCGCTTCAAAACAAAACTAACCAATAACAGCGTTTTCGGCTTTCTTGAGGATCTCAAGTTGACTTTTCTGTTTTTCCTCTATCCTATCCAGGCACTCAACTCTTCTAGTGAGCTCGGCAGCATATATGATGGATGCGTTGACTTTTTCTTAAATATTTCAATGAAAAGTAAACAAATTCAATAACTCACTAACCCTCGTGTTCCCTACGAACTTTTTCCAGAGTTTTGGCATGTCTCTCCGGATCTGAAATTGAAAAAAATCAGTGTTTTTACAGCTGGAAAATTCTTACGTCTCTCAATGTCGCTGTCAGTTTCACCTTTACGATAAACCATCTCCCTGGACATGTCCTTTTCCCAATCGAGTTCGCGCTGCAGTCCTCTGACTGAAAT</canonical>
            <polymorphic>GATTCCATATACAAAAAAAGATTATATGAAAATTCAAATATCAATTGTCAGCATGTGCTCTTTTTCTGCTGCTTGTCATTCTTAACTCATACTTTAGACTGGCGATTTTCCGTTCCAGGGTGGTGTTCTCGGCTGAAAATTGCGGGAAGTTTGGGGGGGGGGGCTATTTTGAATCTAAACTACTGGCCAATAGGGAATATTTTCAGTTGAAAATTGTCAATTCCGAATTCGTTAAAACTTGATAAACAACTCAAAACACATCATTTGTGTAATTTTGAGCATCAAAAATAAATTTTCAGTTGAGTTATGGCAAAAATGCCGACATATACCCTTTGTGCTCTGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTGGAAAAAAGTTTTTTTTTTGAATTCTCTGACCACTGTTACATCTGAAACTGCTCTGAAAATTCTGAAAGTGAGAAATTTTCAAAAAACCGATTTTTATGTTTTTGGATTTTACAGCTATTTYCATGCAAAATTTCAAGTCAATCGAGTAATTTTGAACAAAGTTATGTACCGTAGGTATGTTCAAAAAAAAAAAATTCTCCTCACCACTTCTCGCCATTGTATCTTTTCCTAGCGCTTCAAAACAAAACTAACCAATAACAGCGTTTTCGGCTTTCTTGAGGATCTCAAGTTGACTTTTCTGTTTTTCCTCTATCCTATCCAGGCACTCAACTCTTCTAGTGAGCTCGGCAGCATATATGATGGATGCGTTGACTTTTTCTTAAATATTTCAATGAAAAGTAAACAAATTCAATAACTCACTAACCCTCGTGTTCCCTACGAACTTTTTCCAGAGTTTTGGCATGTCTCTCCGGATCTGAAATTGAAAAAAATCAGTGTTTTTACAGCTGGAAAATTCTTACGTCTCTCAATGTCGCTGTCAGTTTCACCTTTACGATAAACCATCTCCCTGGACATGTCCTTTTCCCAATCGAGTTCGCGCTGCAGTCCTCTGACTGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAAAATTCTGAAAGTGAGAAA</pcr_primer_p1>
		<pcr_primer_p2>CAGAAAAGTCAACTTGAGATCC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAATTCTGAAAGTGAGAAATTTTCAAAAAACCGATTTTTATGTTTTTGGATTTTACAGCTATTTCCATGCAAAATTTCAAGTCAATCGAGTAATTTTGAACAAAGTTATGTACCGTAGGTATGTTCAAAAAAAAAAAATTCTCCTCACCACTTCTCGCCATTGTATCTTTTCCTAGCGCTTCAAAACAAAACTAACCAATAACAGCGTTTTCGGCTTTCTTGAGGATCTCAAGTTGACTTTTCTG</canonical_amplicon>
		<polymorphic_amplicon>CTGAAAATTCTGAAAGTGAGAAATTTTCAAAAAACCGATTTTTATGTTTTTGGATTTTACAGCTATTTYCATGCAAAATTTCAAGTCAATCGAGTAATTTTGAACAAAGTTATGTACCGTAGGTATGTTCAAAAAAAAAAAATTCTCCTCACCACTTCTCGCCATTGTATCTTTTCCTAGCGCTTCAAAACAAAACTAACCAATAACAGCGTTTTCGGCTTTCTTGAGGATCTCAAGTTGACTTTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31846</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>259095</contig_pos>
        <strand>+</strand>
        <context>TCAAGTCAAT[C/T]GAGTAATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTATGTTTTTGGATTTTACAGCTATTTCCATGCAAAATTTCAAGTCAAT</left_flank>
        <right_flank>GAGTAATTTTGAACAAAGTTATGTACCGTAGGTATGTTCAAAAAAAAAAA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATATGAAAATTCAAATATCAATTGTCAGCATGTGCTCTTTTTCTGCTGCTTGTCATTCTTAACTCATACTTTAGACTGGCGATTTTCCGTTCCAGGGTGGTGTTCTCGGCTGAAAATTGCGGGAAGTTTGGGGGGGGGGGCTATTTTGAATCTAAACTACTGGCCAATAGGGAATATTTTCAGTTGAAAATTGTCAATTCCGAATTCGTTAAAACTTGATAAACAACTCAAAACACATCATTTGTGTAATTTTGAGCATCAAAAATAAATTTTCAGTTGAGTTATGGCAAAAATGCCGACATATACCCTTTGTGCTCTGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTGGAAAAAAGTTTTTTTTTTGAATTCTCTGACCACTGTTACATCTGAAACTGCTCTGAAAATTCTGAAAGTGAGAAATTTTCAAAAAACCGATTTTTATGTTTTTGGATTTTACAGCTATTTCCATGCAAAATTTCAAGTCAATCGAGTAATTTTGAACAAAGTTATGTACCGTAGGTATGTTCAAAAAAAAAAAATTCTCCTCACCACTTCTCGCCATTGTATCTTTTCCTAGCGCTTCAAAACAAAACTAACCAATAACAGCGTTTTCGGCTTTCTTGAGGATCTCAAGTTGACTTTTCTGTTTTTCCTCTATCCTATCCAGGCACTCAACTCTTCTAGTGAGCTCGGCAGCATATATGATGGATGCGTTGACTTTTTCTTAAATATTTCAATGAAAAGTAAACAAATTCAATAACTCACTAACCCTCGTGTTCCCTACGAACTTTTTCCAGAGTTTTGGCATGTCTCTCCGGATCTGAAATTGAAAAAAATCAGTGTTTTTACAGCTGGAAAATTCTTACGTCTCTCAATGTCGCTGTCAGTTTCACCTTTACGATAAACCATCTCCCTGGACATGTCCTTTTCCCAATCGAGTTCGCGCTGCAGTCCTCTGACTGAAATTCGAGCTTTTTAAATTTTCAAA</canonical>
            <polymorphic>TATATGAAAATTCAAATATCAATTGTCAGCATGTGCTCTTTTTCTGCTGCTTGTCATTCTTAACTCATACTTTAGACTGGCGATTTTCCGTTCCAGGGTGGTGTTCTCGGCTGAAAATTGCGGGAAGTTTGGGGGGGGGGGCTATTTTGAATCTAAACTACTGGCCAATAGGGAATATTTTCAGTTGAAAATTGTCAATTCCGAATTCGTTAAAACTTGATAAACAACTCAAAACACATCATTTGTGTAATTTTGAGCATCAAAAATAAATTTTCAGTTGAGTTATGGCAAAAATGCCGACATATACCCTTTGTGCTCTGAGCATCATAACTCGAGAGCCCGACTTCCAAAATTCTGGAAAAAAGTTTTTTTTTTGAATTCTCTGACCACTGTTACATCTGAAACTGCTCTGAAAATTCTGAAAGTGAGAAATTTTCAAAAAACCGATTTTTATGTTTTTGGATTTTACAGCTATTTCCATGCAAAATTTCAAGTCAATYGAGTAATTTTGAACAAAGTTATGTACCGTAGGTATGTTCAAAAAAAAAAAATTCTCCTCACCACTTCTCGCCATTGTATCTTTTCCTAGCGCTTCAAAACAAAACTAACCAATAACAGCGTTTTCGGCTTTCTTGAGGATCTCAAGTTGACTTTTCTGTTTTTCCTCTATCCTATCCAGGCACTCAACTCTTCTAGTGAGCTCGGCAGCATATATGATGGATGCGTTGACTTTTTCTTAAATATTTCAATGAAAAGTAAACAAATTCAATAACTCACTAACCCTCGTGTTCCCTACGAACTTTTTCCAGAGTTTTGGCATGTCTCTCCGGATCTGAAATTGAAAAAAATCAGTGTTTTTACAGCTGGAAAATTCTTACGTCTCTCAATGTCGCTGTCAGTTTCACCTTTACGATAAACCATCTCCCTGGACATGTCCTTTTCCCAATCGAGTTCGCGCTGCAGTCCTCTGACTGAAATTCGAGCTTTTTAAATTTTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>448 333 167 32 20</canonical_bands>
                <polymorphic_bands>615 333 32 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAAAATTCTGAAAGTGAGAAA</pcr_primer_p1>
		<pcr_primer_p2>CAGAAAAGTCAACTTGAGATCC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAATTCTGAAAGTGAGAAATTTTCAAAAAACCGATTTTTATGTTTTTGGATTTTACAGCTATTTCCATGCAAAATTTCAAGTCAATCGAGTAATTTTGAACAAAGTTATGTACCGTAGGTATGTTCAAAAAAAAAAAATTCTCCTCACCACTTCTCGCCATTGTATCTTTTCCTAGCGCTTCAAAACAAAACTAACCAATAACAGCGTTTTCGGCTTTCTTGAGGATCTCAAGTTGACTTTTCTG</canonical_amplicon>
		<polymorphic_amplicon>CTGAAAATTCTGAAAGTGAGAAATTTTCAAAAAACCGATTTTTATGTTTTTGGATTTTACAGCTATTTCCATGCAAAATTTCAAGTCAATYGAGTAATTTTGAACAAAGTTATGTACCGTAGGTATGTTCAAAAAAAAAAAATTCTCCTCACCACTTCTCGCCATTGTATCTTTTCCTAGCGCTTCAAAACAAAACTAACCAATAACAGCGTTTTCGGCTTTCTTGAGGATCTCAAGTTGACTTTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31847</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>260887</contig_pos>
        <strand>+</strand>
        <context>TGCCAAAGAA[A/G]ATCGTGCTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTCTTTACGATATTCCATTTCCCTGAACATGGCATCTTGCCAAAGAA</left_flank>
        <right_flank>ATCGTGCTGCAGGGCTTCGACTGGAATTCGAAGTTGTTTTGAATTTTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTAACTGAATGTTAATTATTATATCACAAGTGTTTTGTCAGTCGATCACTTTTTGACAACTCTCATAGGAACCGAGATAATTGAGTTCAAAGTTAAAAGTTAGGTGGACCATTCTATCTTTTCTAGTGCTTCCAAACAAAAAATTACCAATAACGACGTCACCGTTCTTCTTGATCTTCTCAAATTCCGTCTTTTGCTTCTGCTGGACTCGCTCCATGATTTCCAGTCTCTGCTTCAGCTCGGCCGCATACCAGATGCCATAGTTGACTTTTTCTAGAAATTATTTTTAAATGAAACTATACTGAATTCATCAAACTAACCCTCGCGCTCTATTCGAACCTTCTTCAATTCATTCTCATGCCACTCTATGCCTGAAAACAGAGCAAAAATACTTTTTTTTCAGCTCTAAATTAAAAAAAAACACACGTTTCTCAATTTCGCTATTGGTTTTTTCTTTACGATATTCCATTTCCCTGAACATGGCATCTTGCCAAAGAAAATCGTGCTGCAGGGCTTCGACTGGAATTCGAAGTTGTTTTGAATTTTCGAAAATAATTCAAAATCGACTTACCACGCTCCCGATGTTCAATATTGTCCATTTTGTTGTTGGAAAACTGAAAAATAGAGGCATCAAATACCCGGGACATCAATCTAATCTTTAAATATAAGGTAATAGAAACCGCAAGAAAAGCGATGGATTGTGATTTTCAAAAAATGAAATTCGTTCAAAAAAAAAGAAAAAAATTAGATTTATTATGACTAGGAATGCGGTTGTGAAATGACACAGACTAGTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGTTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAGGGGCAGTACTATTGGG</canonical>
            <polymorphic>ACTAACTGAATGTTAATTATTATATCACAAGTGTTTTGTCAGTCGATCACTTTTTGACAACTCTCATAGGAACCGAGATAATTGAGTTCAAAGTTAAAAGTTAGGTGGACCATTCTATCTTTTCTAGTGCTTCCAAACAAAAAATTACCAATAACGACGTCACCGTTCTTCTTGATCTTCTCAAATTCCGTCTTTTGCTTCTGCTGGACTCGCTCCATGATTTCCAGTCTCTGCTTCAGCTCGGCCGCATACCAGATGCCATAGTTGACTTTTTCTAGAAATTATTTTTAAATGAAACTATACTGAATTCATCAAACTAACCCTCGCGCTCTATTCGAACCTTCTTCAATTCATTCTCATGCCACTCTATGCCTGAAAACAGAGCAAAAATACTTTTTTTTCAGCTCTAAATTAAAAAAAAACACACGTTTCTCAATTTCGCTATTGGTTTTTTCTTTACGATATTCCATTTCCCTGAACATGGCATCTTGCCAAAGAARATCGTGCTGCAGGGCTTCGACTGGAATTCGAAGTTGTTTTGAATTTTCGAAAATAATTCAAAATCGACTTACCACGCTCCCGATGTTCAATATTGTCCATTTTGTTGTTGGAAAACTGAAAAATAGAGGCATCAAATACCCGGGACATCAATCTAATCTTTAAATATAAGGTAATAGAAACCGCAAGAAAAGCGATGGATTGTGATTTTCAAAAAATGAAATTCGTTCAAAAAAAAAGAAAAAAATTAGATTTATTATGACTAGGAATGCGGTTGTGAAATGACACAGACTAGTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGTTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAGGGGCAGTACTATTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTATTCGAACCTTCTTCAAT</pcr_primer_p1>
		<pcr_primer_p2>GGTAAGTCGATTTTGAATTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTCTATTCGAACCTTCTTCAATTCATTCTCATGCCACTCTATGCCTGAAAACAGAGCAAAAATACTTTTTTTTCAGCTCTAAATTAAAAAAAAACACACGTTTCTCAATTTCGCTATTGGTTTTTTCTTTACGATATTCCATTTCCCTGAACATGGCATCTTGCCAAAGAAAATCGTGCTGCAGGGCTTCGACTGGAATTCGAAGTTGTTTTGAATTTTCGAAAATAATTCAAAATCGACTTACC</canonical_amplicon>
		<polymorphic_amplicon>CTCTATTCGAACCTTCTTCAATTCATTCTCATGCCACTCTATGCCTGAAAACAGAGCAAAAATACTTTTTTTTCAGCTCTAAATTAAAAAAAAACACACGTTTCTCAATTTCGCTATTGGTTTTTTCTTTACGATATTCCATTTCCCTGAACATGGCATCTTGCCAAAGAARATCGTGCTGCAGGGCTTCGACTGGAATTCGAAGTTGTTTTGAATTTTCGAAAATAATTCAAAATCGACTTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31848</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>261097</contig_pos>
        <strand>+</strand>
        <context>TTGTGATTTT[A/G]WAAAAATGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAAATATAAGGTAATAGAAACCGCAAGAAAAGCGATGGATTGTGATTTT</left_flank>
        <right_flank>AAAAAATGAAATTCGTTCAAAAAAAAAGAAAAAAATTAGATTTATTATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCTCCATGATTTCCAGTCTCTGCTTCAGCTCGGCCGCATACCAGATGCCATAGTTGACTTTTTCTAGAAATTATTTTTAAATGAAACTATACTGAATTCATCAAACTAACCCTCGCGCTCTATTCGAACCTTCTTCAATTCATTCTCATGCCACTCTATGCCTGAAAACAGAGCAAAAATACTTTTTTTTCAGCTCTAAATTAAAAAAAAACACACGTTTCTCAATTTCGCTATTGGTTTTTTCTTTACGATATTCCATTTCCCTGAACATGGCATCTTGCCAAAGAAAATCGTGCTGCAGGGCTTCGACTGGAATTCGAAGTTGTTTTGAATTTTCGAAAATAATTCAAAATCGACTTACCACGCTCCCGATGTTCAATATTGTCCATTTTGTTGTTGGAAAACTGAAAAATAGAGGCATCAAATACCCGGGACATCAATCTAATCTTTAAATATAAGGTAATAGAAACCGCAAGAAAAGCGATGGATTGTGATTTTCAAAAAATGAAATTCGTTCAAAAAAAAAGAAAAAAATTAGATTTATTATGACTAGGAATGCGGTTGTGAAATGACACAGACTAGTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGTTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAGGGGCAGTACTATTGGGCAAGCTATGGACATTATTCCGGTAAAACTAGAATGTTCGAAAAACAAGTCGGTCAGGGTCAGGGCAAATCGCCTAGGCTATGTCCCTATTCTTGAGCTTCAATCTCAATTATCTCGTTTGCTGCAAAAGATACCAAAATTTCGTCCATTATTAAAATGTTTATCATAATGTCACCAGCCTTTTATCAGTTGACAAAAATTTGAAATCTTT</canonical>
            <polymorphic>CGCTCCATGATTTCCAGTCTCTGCTTCAGCTCGGCCGCATACCAGATGCCATAGTTGACTTTTTCTAGAAATTATTTTTAAATGAAACTATACTGAATTCATCAAACTAACCCTCGCGCTCTATTCGAACCTTCTTCAATTCATTCTCATGCCACTCTATGCCTGAAAACAGAGCAAAAATACTTTTTTTTCAGCTCTAAATTAAAAAAAAACACACGTTTCTCAATTTCGCTATTGGTTTTTTCTTTACGATATTCCATTTCCCTGAACATGGCATCTTGCCAAAGAAAATCGTGCTGCAGGGCTTCGACTGGAATTCGAAGTTGTTTTGAATTTTCGAAAATAATTCAAAATCGACTTACCACGCTCCCGATGTTCAATATTGTCCATTTTGTTGTTGGAAAACTGAAAAATAGAGGCATCAAATACCCGGGACATCAATCTAATCTTTAAATATAAGGTAATAGAAACCGCAAGAAAAGCGATGGATTGTGATTTTRAAAAAATGAAATTCGTTCAAAAAAAAAGAAAAAAATTAGATTTATTATGACTAGGAATGCGGTTGTGAAATGACACAGACTAGTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGTTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAGGGGCAGTACTATTGGGCAAGCTATGGACATTATTCCGGTAAAACTAGAATGTTCGAAAAACAAGTCGGTCAGGGTCAGGGCAAATCGCCTAGGCTATGTCCCTATTCTTGAGCTTCAATCTCAATTATCTCGTTTGCTGCAAAAGATACCAAAATTTCGTCCATTATTAAAATGTTTATCATAATGTCACCAGCCTTTTATCAGTTGACAAAAATTTGAAATCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAAAAATAGAGGCATCAAATA</pcr_primer_p1>
		<pcr_primer_p2>TAGACGACAGAGAAAGCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAAATAGAGGCATCAAATACCCGGGACATCAATCTAATCTTTAAATATAAGGTAATAGAAACCGCAAGAAAAGCGATGGATTGTGATTTTCAAAAAATGAAATTCGTTCAAAAAAAAAGAAAAAAATTAGATTTATTATGACTAGGAATGCGGTTGTGAAATGACACAGACTAGTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTA</canonical_amplicon>
		<polymorphic_amplicon>CTGAAAAATAGAGGCATCAAATACCCGGGACATCAATCTAATCTTTAAATATAAGGTAATAGAAACCGCAAGAAAAGCGATGGATTGTGATTTTRAAAAAATGAAATTCGTTCAAAAAAAAAGAAAAAAATTAGATTTATTATGACTAGGAATGCGGTTGTGAAATGACACAGACTAGTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31849</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>261098</contig_pos>
        <strand>+</strand>
        <context>TGTGATTTTR[A/T]AAAAATGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAATATAAGGTAATAGAAACCGCAAGAAAAGCGATGGATTGTGATTTTC</left_flank>
        <right_flank>AAAAATGAAATTCGTTCAAAAAAAAAGAAAAAAATTAGATTTATTATGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCCATGATTTCCAGTCTCTGCTTCAGCTCGGCCGCATACCAGATGCCATAGTTGACTTTTTCTAGAAATTATTTTTAAATGAAACTATACTGAATTCATCAAACTAACCCTCGCGCTCTATTCGAACCTTCTTCAATTCATTCTCATGCCACTCTATGCCTGAAAACAGAGCAAAAATACTTTTTTTTCAGCTCTAAATTAAAAAAAAACACACGTTTCTCAATTTCGCTATTGGTTTTTTCTTTACGATATTCCATTTCCCTGAACATGGCATCTTGCCAAAGAAAATCGTGCTGCAGGGCTTCGACTGGAATTCGAAGTTGTTTTGAATTTTCGAAAATAATTCAAAATCGACTTACCACGCTCCCGATGTTCAATATTGTCCATTTTGTTGTTGGAAAACTGAAAAATAGAGGCATCAAATACCCGGGACATCAATCTAATCTTTAAATATAAGGTAATAGAAACCGCAAGAAAAGCGATGGATTGTGATTTTCAAAAAATGAAATTCGTTCAAAAAAAAAGAAAAAAATTAGATTTATTATGACTAGGAATGCGGTTGTGAAATGACACAGACTAGTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGTTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAGGGGCAGTACTATTGGGCAAGCTATGGACATTATTCCGGTAAAACTAGAATGTTCGAAAAACAAGTCGGTCAGGGTCAGGGCAAATCGCCTAGGCTATGTCCCTATTCTTGAGCTTCAATCTCAATTATCTCGTTTGCTGCAAAAGATACCAAAATTTCGTCCATTATTAAAATGTTTATCATAATGTCACCAGCCTTTTATCAGTTGACAAAAATTTGAAATCTTTC</canonical>
            <polymorphic>GCTCCATGATTTCCAGTCTCTGCTTCAGCTCGGCCGCATACCAGATGCCATAGTTGACTTTTTCTAGAAATTATTTTTAAATGAAACTATACTGAATTCATCAAACTAACCCTCGCGCTCTATTCGAACCTTCTTCAATTCATTCTCATGCCACTCTATGCCTGAAAACAGAGCAAAAATACTTTTTTTTCAGCTCTAAATTAAAAAAAAACACACGTTTCTCAATTTCGCTATTGGTTTTTTCTTTACGATATTCCATTTCCCTGAACATGGCATCTTGCCAAAGAAAATCGTGCTGCAGGGCTTCGACTGGAATTCGAAGTTGTTTTGAATTTTCGAAAATAATTCAAAATCGACTTACCACGCTCCCGATGTTCAATATTGTCCATTTTGTTGTTGGAAAACTGAAAAATAGAGGCATCAAATACCCGGGACATCAATCTAATCTTTAAATATAAGGTAATAGAAACCGCAAGAAAAGCGATGGATTGTGATTTTCWAAAAATGAAATTCGTTCAAAAAAAAAGAAAAAAATTAGATTTATTATGACTAGGAATGCGGTTGTGAAATGACACAGACTAGTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGTTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAGGGGCAGTACTATTGGGCAAGCTATGGACATTATTCCGGTAAAACTAGAATGTTCGAAAAACAAGTCGGTCAGGGTCAGGGCAAATCGCCTAGGCTATGTCCCTATTCTTGAGCTTCAATCTCAATTATCTCGTTTGCTGCAAAAGATACCAAAATTTCGTCCATTATTAAAATGTTTATCATAATGTCACCAGCCTTTTATCAGTTGACAAAAATTTGAAATCTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAAAAATAGAGGCATCAAATA</pcr_primer_p1>
		<pcr_primer_p2>TAGACGACAGAGAAAGCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAAATAGAGGCATCAAATACCCGGGACATCAATCTAATCTTTAAATATAAGGTAATAGAAACCGCAAGAAAAGCGATGGATTGTGATTTTCAAAAAATGAAATTCGTTCAAAAAAAAAGAAAAAAATTAGATTTATTATGACTAGGAATGCGGTTGTGAAATGACACAGACTAGTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTA</canonical_amplicon>
		<polymorphic_amplicon>CTGAAAAATAGAGGCATCAAATACCCGGGACATCAATCTAATCTTTAAATATAAGGTAATAGAAACCGCAAGAAAAGCGATGGATTGTGATTTTCWAAAAATGAAATTCGTTCAAAAAAAAAGAAAAAAATTAGATTTATTATGACTAGGAATGCGGTTGTGAAATGACACAGACTAGTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31850</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>261322</contig_pos>
        <strand>+</strand>
        <context>TGAAAAAAAR[A/C]TTTTTTTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAG</left_flank>
        <right_flank>TTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCGCTATTGGTTTTTTCTTTACGATATTCCATTTCCCTGAACATGGCATCTTGCCAAAGAAAATCGTGCTGCAGGGCTTCGACTGGAATTCGAAGTTGTTTTGAATTTTCGAAAATAATTCAAAATCGACTTACCACGCTCCCGATGTTCAATATTGTCCATTTTGTTGTTGGAAAACTGAAAAATAGAGGCATCAAATACCCGGGACATCAATCTAATCTTTAAATATAAGGTAATAGAAACCGCAAGAAAAGCGATGGATTGTGATTTTCAAAAAATGAAATTCGTTCAAAAAAAAAGAAAAAAATTAGATTTATTATGACTAGGAATGCGGTTGTGAAATGACACAGACTAGTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGTTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAGGGGCAGTACTATTGGGCAAGCTATGGACATTATTCCGGTAAAACTAGAATGTTCGAAAAACAAGTCGGTCAGGGTCAGGGCAAATCGCCTAGGCTATGTCCCTATTCTTGAGCTTCAATCTCAATTATCTCGTTTGCTGCAAAAGATACCAAAATTTCGTCCATTATTAAAATGTTTATCATAATGTCACCAGCCTTTTATCAGTTGACAAAAATTTGAAATCTTTCGCAAAGACCGATATAATGGAGTTCAAAGATAAGTACCATAAAGTGATTGAAGTACCACTTTCAACTTTGAGCGAATTTTTCTCGACTCCTTCAAAAGCTATCAAAAATTTGTCAACTAGTAAATTGTTTATCATGATGTCAGCAATATTTTACCAGTGGACAGATTCTTGATATCTCTCATAGGGACCGAGATAATGAAGCTCAAACAAACTCACCCTCTGTTT</canonical>
            <polymorphic>ATTTCGCTATTGGTTTTTTCTTTACGATATTCCATTTCCCTGAACATGGCATCTTGCCAAAGAAAATCGTGCTGCAGGGCTTCGACTGGAATTCGAAGTTGTTTTGAATTTTCGAAAATAATTCAAAATCGACTTACCACGCTCCCGATGTTCAATATTGTCCATTTTGTTGTTGGAAAACTGAAAAATAGAGGCATCAAATACCCGGGACATCAATCTAATCTTTAAATATAAGGTAATAGAAACCGCAAGAAAAGCGATGGATTGTGATTTTCAAAAAATGAAATTCGTTCAAAAAAAAAGAAAAAAATTAGATTTATTATGACTAGGAATGCGGTTGTGAAATGACACAGACTAGTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGMTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAGGGGCAGTACTATTGGGCAAGCTATGGACATTATTCCGGTAAAACTAGAATGTTCGAAAAACAAGTCGGTCAGGGTCAGGGCAAATCGCCTAGGCTATGTCCCTATTCTTGAGCTTCAATCTCAATTATCTCGTTTGCTGCAAAAGATACCAAAATTTCGTCCATTATTAAAATGTTTATCATAATGTCACCAGCCTTTTATCAGTTGACAAAAATTTGAAATCTTTCGCAAAGACCGATATAATGGAGTTCAAAGATAAGTACCATAAAGTGATTGAAGTACCACTTTCAACTTTGAGCGAATTTTTCTCGACTCCTTCAAAAGCTATCAAAAATTTGTCAACTAGTAAATTGTTTATCATGATGTCAGCAATATTTTACCAGTGGACAGATTCTTGATATCTCTCATAGGGACCGAGATAATGAAGCTCAAACAAACTCACCCTCTGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAAAGGAATTGTGAAATGTGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCGAACATTCTAGTTTTACC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGTTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAGGGGCAGTACTATTGGGCAAGCTATGGACATTATTCCGGTAAAACTAGAATGTTCGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTAAAGGAATTGTGAAATGTGAAATTTAAAAAAATAGTTTTTTCAGCTTTGATTCTGCTTTCTCTGTCGTCTAGCCTCAACCAGTTCTCTTCTCAATGCCACCAGTTTCTGTTGAAGTTCTAGATTCTCCTCTGAAAAAAAGMTTTTTTTTGATTTGGTAGACAAATTGGGAGCCCATATTTTAGGAAAGAGGGGCAGTACTATTGGGCAAGCTATGGACATTATTCCGGTAAAACTAGAATGTTCGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31851</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>262358</contig_pos>
        <strand></strand>
        <context>AAAAACGCAC[T/G]GTCATACTGR</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CTCACTCTTCTCCATTTCTTCATCAATATTTTTCATTCTAAAAAACGCAC</left_flank>
        <right_flank>GTCATACTGAAGCCTATGATGGCCGAGAACAGTACGAAGTCGCAGAACTG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGTTTTTCCTTGACTGTTTCCATTATGGCAGCTCGAGTTTCCAATTCAGCGGCATATTGAATCGCTTTTTCTACCTTATCTGAAAGAATTCTTCTGAATTGATGGTTAAAATCAAAGCTCTCACCATGCTGTGCTTTCCGAATTTTGATCATTTCTTCTGGATGGTCCAGGCGCTCTGAAAAAGGTTTATTAACATAATTTTTGCAGTAGAGCGCGGTGACGCCTACCTGTGATAGAAGGGCCTTCACATTGTCAAGTTTGAGCTCAATTATACTTATTCCTATGCAAGATATCTAGGATGTGTTAACTGATAAGATGTTTCTAATATTGTGATAATCATTTCTTCAGTTGACAACTTTTCTCTATCTTTGACGGGAACCGAGAAAGTTGTCTCAAAGTTAAAATGGAAGGAGCCCTTCTATAACAGGTTTTACACCTAACAATAGACTCACTCTTCTCCATTTCTTCATCAATATTTTTCATTCTAAAAAACGCACTGTCATACTGAAGCCTATGATGGCCGAGAACAGTACGAAGTCGCAGAACTGAAATTTGCTACATTTTTAAATTAACAAATCAATCAACTCACTTTTTTTCTGATGCTTGACAGCTAGAAGATGAGCTCTAACCAGCTTCCTTGAGATTTGGATAGGGTCTTCTACTGAAAAATTTTTTTGATAAAGGGCTCAAAATTCTTTGGGGTTTTCTTACGTGGTCCTTTTCCAGCCACTTTAGGCTGCTGACTCCTGGTTTTTGGCATTTTAGTGAAATCTTGAAAAGCAATTGATCAAAGATAATTAATTGGGCAACTAGAGATAATGAGAATTGGAAGTTAAGATCCAATAGTTCAAAAAAAGGTGTGATTTGAAAAAAAAAACGGTTTATTGAAACAATCAAGTATAGATGGGCCAATCAGTGTACAATTTTCTATTGAGCTCGGACGAGCTGATGGAGAAAGCATTCATAGTAGAATCTATAGCAGAGAAGGACGTCGATTC</canonical>
            <polymorphic>CTTGTTTTTCCTTGACTGTTTCCATTATGGCAGCTCGAGTTTCCAATTCAGCGGCATATTGAATCGCTTTTTCTACCTTATCTGAAAGAATTCTTCTGAATTGATGGTTAAAATCAAAGCTCTCACCATGCTGTGCTTTCCGAATTTTGATCATTTCTTCTGGATGGTCCAGGCGCTCTGAAAAAGGTTTATTAACATAATTTTTGCAGTAGAGCGCGGTGACGCCTACCTGTGATAGAAGGGCCTTCACATTGTCAAGTTTGAGCTCAATTATACTTATTCCTATGCAAGATATCTAGGATGTGTTAACTGATAAGATGTTTCTAATATTGTGATAATCATTTCTTCAGTTGACAACTTTTCTCTATCTTTGACGGGAACCGAGAAAGTTGTCTCAAAGTTAAAATGGAAGGAGCCCTTCTATAACAGGTTTTACACCTAACAATAGACTCACTCTTCTCCATTTCTTCATCAATATTTTTCATTCTAAAAAACGCACKGTCATACTGAAGCCTATGATGGCCGAGAACAGTACGAAGTCGCAGAACTGAAATTTGCTACATTTTTAAATTAACAAATCAATCAACTCACTTTTTTTCTGATGCTTGACAGCTAGAAGATGAGCTCTAACCAGCTTCCTTGAGATTTGGATAGGGTCTTCTACTGAAAAATTTTTTTGATAAAGGGCTCAAAATTCTTTGGGGTTTTCTTACGTGGTCCTTTTCCAGCCACTTTAGGCTGCTGACTCCTGGTTTTTGGCATTTTAGTGAAATCTTGAAAAGCAATTGATCAAAGATAATTAATTGGGCAACTAGAGATAATGAGAATTGGAAGTTAAGATCCAATAGTTCAAAAAAAGGTGTGATTTGAAAAAAAAAACGGTTTATTGAAACAATCAAGTATAGATGGGCCAATCAGTGTACAATTTTCTATTGAGCTCGGACGAGCTGATGGAGAAAGCATTCATAGTAGAATCTATAGCAGAGAAGGACGTCGATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGACTCACTCTTCTCCATTTCTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCAGTAGAAGACCCTATCC</pcr_primer_p2>
		<pcr_amplicon_size>225</pcr_amplicon_size>
		<canonical_amplicon>AGACTCACTCTTCTCCATTTCTTCATCAATATTTTTCATTCTAAAAAACGCACTGTCATACTGAAGCCTATGATGGCCGAGAACAGTACGAAGTCGCAGAACTGAAATTTGCTACATTTTTAAATTAACAAATCAATCAACTCACTTTTTTTCTGATGCTTGACAGCTAGAAGATGAGCTCTAACCAGCTTCCTTGAGATTTGGATAGGGTCTTCTACTGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AGACTCACTCTTCTCCATTTCTTCATCAATATTTTTCATTCTAAAAAACGCACKGTCATACTGAAGCCTATGATGGCCGAGAACAGTACGAAGTCGCAGAACTGAAATTTGCTACATTTTTAAATTAACAAATCAATCAACTCACTTTTTTTCTGATGCTTGACAGCTAGAAGATGAGCTCTAACCAGCTTCCTTGAGATTTGGATAGGGTCTTCTACTGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31852</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>262368</contig_pos>
        <strand></strand>
        <context>KGTCATACTG[A/G]AGCCTATGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCATTTCTTCATCAATATTTTTCATTCTAAAAAACGCACTGTCATACTG</left_flank>
        <right_flank>AGCCTATGATGGCCGAGAACAGTACGAAGTCGCAGAACTGAAATTTGCTA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGACTGTTTCCATTATGGCAGCTCGAGTTTCCAATTCAGCGGCATATTGAATCGCTTTTTCTACCTTATCTGAAAGAATTCTTCTGAATTGATGGTTAAAATCAAAGCTCTCACCATGCTGTGCTTTCCGAATTTTGATCATTTCTTCTGGATGGTCCAGGCGCTCTGAAAAAGGTTTATTAACATAATTTTTGCAGTAGAGCGCGGTGACGCCTACCTGTGATAGAAGGGCCTTCACATTGTCAAGTTTGAGCTCAATTATACTTATTCCTATGCAAGATATCTAGGATGTGTTAACTGATAAGATGTTTCTAATATTGTGATAATCATTTCTTCAGTTGACAACTTTTCTCTATCTTTGACGGGAACCGAGAAAGTTGTCTCAAAGTTAAAATGGAAGGAGCCCTTCTATAACAGGTTTTACACCTAACAATAGACTCACTCTTCTCCATTTCTTCATCAATATTTTTCATTCTAAAAAACGCACTGTCATACTGAAGCCTATGATGGCCGAGAACAGTACGAAGTCGCAGAACTGAAATTTGCTACATTTTTAAATTAACAAATCAATCAACTCACTTTTTTTCTGATGCTTGACAGCTAGAAGATGAGCTCTAACCAGCTTCCTTGAGATTTGGATAGGGTCTTCTACTGAAAAATTTTTTTGATAAAGGGCTCAAAATTCTTTGGGGTTTTCTTACGTGGTCCTTTTCCAGCCACTTTAGGCTGCTGACTCCTGGTTTTTGGCATTTTAGTGAAATCTTGAAAAGCAATTGATCAAAGATAATTAATTGGGCAACTAGAGATAATGAGAATTGGAAGTTAAGATCCAATAGTTCAAAAAAAGGTGTGATTTGAAAAAAAAAACGGTTTATTGAAACAATCAAGTATAGATGGGCCAATCAGTGTACAATTTTCTATTGAGCTCGGACGAGCTGATGGAGAAAGCATTCATAGTAGAATCTATAGCAGAGAAGGACGTCGATTCAGCCGTCTCC</canonical>
            <polymorphic>CTTGACTGTTTCCATTATGGCAGCTCGAGTTTCCAATTCAGCGGCATATTGAATCGCTTTTTCTACCTTATCTGAAAGAATTCTTCTGAATTGATGGTTAAAATCAAAGCTCTCACCATGCTGTGCTTTCCGAATTTTGATCATTTCTTCTGGATGGTCCAGGCGCTCTGAAAAAGGTTTATTAACATAATTTTTGCAGTAGAGCGCGGTGACGCCTACCTGTGATAGAAGGGCCTTCACATTGTCAAGTTTGAGCTCAATTATACTTATTCCTATGCAAGATATCTAGGATGTGTTAACTGATAAGATGTTTCTAATATTGTGATAATCATTTCTTCAGTTGACAACTTTTCTCTATCTTTGACGGGAACCGAGAAAGTTGTCTCAAAGTTAAAATGGAAGGAGCCCTTCTATAACAGGTTTTACACCTAACAATAGACTCACTCTTCTCCATTTCTTCATCAATATTTTTCATTCTAAAAAACGCACTGTCATACTGRAGCCTATGATGGCCGAGAACAGTACGAAGTCGCAGAACTGAAATTTGCTACATTTTTAAATTAACAAATCAATCAACTCACTTTTTTTCTGATGCTTGACAGCTAGAAGATGAGCTCTAACCAGCTTCCTTGAGATTTGGATAGGGTCTTCTACTGAAAAATTTTTTTGATAAAGGGCTCAAAATTCTTTGGGGTTTTCTTACGTGGTCCTTTTCCAGCCACTTTAGGCTGCTGACTCCTGGTTTTTGGCATTTTAGTGAAATCTTGAAAAGCAATTGATCAAAGATAATTAATTGGGCAACTAGAGATAATGAGAATTGGAAGTTAAGATCCAATAGTTCAAAAAAAGGTGTGATTTGAAAAAAAAAACGGTTTATTGAAACAATCAAGTATAGATGGGCCAATCAGTGTACAATTTTCTATTGAGCTCGGACGAGCTGATGGAGAAAGCATTCATAGTAGAATCTATAGCAGAGAAGGACGTCGATTCAGCCGTCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGACTCACTCTTCTCCATTTCTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCAGTAGAAGACCCTATCC</pcr_primer_p2>
		<pcr_amplicon_size>225</pcr_amplicon_size>
		<canonical_amplicon>AGACTCACTCTTCTCCATTTCTTCATCAATATTTTTCATTCTAAAAAACGCACTGTCATACTGAAGCCTATGATGGCCGAGAACAGTACGAAGTCGCAGAACTGAAATTTGCTACATTTTTAAATTAACAAATCAATCAACTCACTTTTTTTCTGATGCTTGACAGCTAGAAGATGAGCTCTAACCAGCTTCCTTGAGATTTGGATAGGGTCTTCTACTGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AGACTCACTCTTCTCCATTTCTTCATCAATATTTTTCATTCTAAAAAACGCACTGTCATACTGRAGCCTATGATGGCCGAGAACAGTACGAAGTCGCAGAACTGAAATTTGCTACATTTTTAAATTAACAAATCAATCAACTCACTTTTTTTCTGATGCTTGACAGCTAGAAGATGAGCTCTAACCAGCTTCCTTGAGATTTGGATAGGGTCTTCTACTGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31853</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>262501</contig_pos>
        <strand></strand>
        <context>AGCTTCCTTG[A/G]GATTTGGATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTCTGATGCTTGACAGCTAGAAGATGAGCTCTAACCAGCTTCCTTG</left_flank>
        <right_flank>GATTTGGATAGGGTCTTCTACTGAAAAATTTTTTTGATAAAGGGCTCAAA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTGATCATTTCTTCTGGATGGTCCAGGCGCTCTGAAAAAGGTTTATTAACATAATTTTTGCAGTAGAGCGCGGTGACGCCTACCTGTGATAGAAGGGCCTTCACATTGTCAAGTTTGAGCTCAATTATACTTATTCCTATGCAAGATATCTAGGATGTGTTAACTGATAAGATGTTTCTAATATTGTGATAATCATTTCTTCAGTTGACAACTTTTCTCTATCTTTGACGGGAACCGAGAAAGTTGTCTCAAAGTTAAAATGGAAGGAGCCCTTCTATAACAGGTTTTACACCTAACAATAGACTCACTCTTCTCCATTTCTTCATCAATATTTTTCATTCTAAAAAACGCACTGTCATACTGAAGCCTATGATGGCCGAGAACAGTACGAAGTCGCAGAACTGAAATTTGCTACATTTTTAAATTAACAAATCAATCAACTCACTTTTTTTCTGATGCTTGACAGCTAGAAGATGAGCTCTAACCAGCTTCCTTGAGATTTGGATAGGGTCTTCTACTGAAAAATTTTTTTGATAAAGGGCTCAAAATTCTTTGGGGTTTTCTTACGTGGTCCTTTTCCAGCCACTTTAGGCTGCTGACTCCTGGTTTTTGGCATTTTAGTGAAATCTTGAAAAGCAATTGATCAAAGATAATTAATTGGGCAACTAGAGATAATGAGAATTGGAAGTTAAGATCCAATAGTTCAAAAAAAGGTGTGATTTGAAAAAAAAAACGGTTTATTGAAACAATCAAGTATAGATGGGCCAATCAGTGTACAATTTTCTATTGAGCTCGGACGAGCTGATGGAGAAAGCATTCATAGTAGAATCTATAGCAGAGAAGGACGTCGATTCAGCCGTCTCCAATGGAGCAACTGGAGCAGTAGCCATCTTCCATTCCTCCAGATCTTCTTCGATCATCTCAATCTTTCCTTTGTACATCGCGTTCTCCACTGAAACCATTATTTAAAAATATTTATTTTCATACAAGCCTGGTT</canonical>
            <polymorphic>ATTTTGATCATTTCTTCTGGATGGTCCAGGCGCTCTGAAAAAGGTTTATTAACATAATTTTTGCAGTAGAGCGCGGTGACGCCTACCTGTGATAGAAGGGCCTTCACATTGTCAAGTTTGAGCTCAATTATACTTATTCCTATGCAAGATATCTAGGATGTGTTAACTGATAAGATGTTTCTAATATTGTGATAATCATTTCTTCAGTTGACAACTTTTCTCTATCTTTGACGGGAACCGAGAAAGTTGTCTCAAAGTTAAAATGGAAGGAGCCCTTCTATAACAGGTTTTACACCTAACAATAGACTCACTCTTCTCCATTTCTTCATCAATATTTTTCATTCTAAAAAACGCACTGTCATACTGAAGCCTATGATGGCCGAGAACAGTACGAAGTCGCAGAACTGAAATTTGCTACATTTTTAAATTAACAAATCAATCAACTCACTTTTTTTCTGATGCTTGACAGCTAGAAGATGAGCTCTAACCAGCTTCCTTGRGATTTGGATAGGGTCTTCTACTGAAAAATTTTTTTGATAAAGGGCTCAAAATTCTTTGGGGTTTTCTTACGTGGTCCTTTTCCAGCCACTTTAGGCTGCTGACTCCTGGTTTTTGGCATTTTAGTGAAATCTTGAAAAGCAATTGATCAAAGATAATTAATTGGGCAACTAGAGATAATGAGAATTGGAAGTTAAGATCCAATAGTTCAAAAAAAGGTGTGATTTGAAAAAAAAAACGGTTTATTGAAACAATCAAGTATAGATGGGCCAATCAGTGTACAATTTTCTATTGAGCTCGGACGAGCTGATGGAGAAAGCATTCATAGTAGAATCTATAGCAGAGAAGGACGTCGATTCAGCCGTCTCCAATGGAGCAACTGGAGCAGTAGCCATCTTCCATTCCTCCAGATCTTCTTCGATCATCTCAATCTTTCCTTTGTACATCGCGTTCTCCACTGAAACCATTATTTAAAAATATTTATTTTCATACAAGCCTGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAGAACTGAAATTTGCTACAT</pcr_primer_p1>
		<pcr_primer_p2>AATTGCTTTTCAAGATTTCACTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GCAGAACTGAAATTTGCTACATTTTTAAATTAACAAATCAATCAACTCACTTTTTTTCTGATGCTTGACAGCTAGAAGATGAGCTCTAACCAGCTTCCTTGAGATTTGGATAGGGTCTTCTACTGAAAAATTTTTTTGATAAAGGGCTCAAAATTCTTTGGGGTTTTCTTACGTGGTCCTTTTCCAGCCACTTTAGGCTGCTGACTCCTGGTTTTTGGCATTTTAGTGAAATCTTGAAAAGCAATT</canonical_amplicon>
		<polymorphic_amplicon>GCAGAACTGAAATTTGCTACATTTTTAAATTAACAAATCAATCAACTCACTTTTTTTCTGATGCTTGACAGCTAGAAGATGAGCTCTAACCAGCTTCCTTGRGATTTGGATAGGGTCTTCTACTGAAAAATTTTTTTGATAAAGGGCTCAAAATTCTTTGGGGTTTTCTTACGTGGTCCTTTTCCAGCCACTTTAGGCTGCTGACTCCTGGTTTTTGGCATTTTAGTGAAATCTTGAAAAGCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31854</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>262530</contig_pos>
        <strand></strand>
        <context>TACTGAAAAA[T/A]WTTTTTGATA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GAGCTCTAACCAGCTTCCTTGAGATTTGGATAGGGTCTTCTACTGAAAAA</left_flank>
        <right_flank>TTTTTTGATAAAGGGCTCAAAATTCTTTGGGGTTTTCTTACGTGGTCCTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGCTCTGAAAAAGGTTTATTAACATAATTTTTGCAGTAGAGCGCGGTGACGCCTACCTGTGATAGAAGGGCCTTCACATTGTCAAGTTTGAGCTCAATTATACTTATTCCTATGCAAGATATCTAGGATGTGTTAACTGATAAGATGTTTCTAATATTGTGATAATCATTTCTTCAGTTGACAACTTTTCTCTATCTTTGACGGGAACCGAGAAAGTTGTCTCAAAGTTAAAATGGAAGGAGCCCTTCTATAACAGGTTTTACACCTAACAATAGACTCACTCTTCTCCATTTCTTCATCAATATTTTTCATTCTAAAAAACGCACTGTCATACTGAAGCCTATGATGGCCGAGAACAGTACGAAGTCGCAGAACTGAAATTTGCTACATTTTTAAATTAACAAATCAATCAACTCACTTTTTTTCTGATGCTTGACAGCTAGAAGATGAGCTCTAACCAGCTTCCTTGAGATTTGGATAGGGTCTTCTACTGAAAAATTTTTTTGATAAAGGGCTCAAAATTCTTTGGGGTTTTCTTACGTGGTCCTTTTCCAGCCACTTTAGGCTGCTGACTCCTGGTTTTTGGCATTTTAGTGAAATCTTGAAAAGCAATTGATCAAAGATAATTAATTGGGCAACTAGAGATAATGAGAATTGGAAGTTAAGATCCAATAGTTCAAAAAAAGGTGTGATTTGAAAAAAAAAACGGTTTATTGAAACAATCAAGTATAGATGGGCCAATCAGTGTACAATTTTCTATTGAGCTCGGACGAGCTGATGGAGAAAGCATTCATAGTAGAATCTATAGCAGAGAAGGACGTCGATTCAGCCGTCTCCAATGGAGCAACTGGAGCAGTAGCCATCTTCCATTCCTCCAGATCTTCTTCGATCATCTCAATCTTTCCTTTGTACATCGCGTTCTCCACTGAAACCATTATTTAAAAATATTTATTTTCATACAAGCCTGGTTGCCTCTGGACCTTCAAACAGCTAGCACCC</canonical>
            <polymorphic>GCGCTCTGAAAAAGGTTTATTAACATAATTTTTGCAGTAGAGCGCGGTGACGCCTACCTGTGATAGAAGGGCCTTCACATTGTCAAGTTTGAGCTCAATTATACTTATTCCTATGCAAGATATCTAGGATGTGTTAACTGATAAGATGTTTCTAATATTGTGATAATCATTTCTTCAGTTGACAACTTTTCTCTATCTTTGACGGGAACCGAGAAAGTTGTCTCAAAGTTAAAATGGAAGGAGCCCTTCTATAACAGGTTTTACACCTAACAATAGACTCACTCTTCTCCATTTCTTCATCAATATTTTTCATTCTAAAAAACGCACTGTCATACTGAAGCCTATGATGGCCGAGAACAGTACGAAGTCGCAGAACTGAAATTTGCTACATTTTTAAATTAACAAATCAATCAACTCACTTTTTTTCTGATGCTTGACAGCTAGAAGATGAGCTCTAACCAGCTTCCTTGAGATTTGGATAGGGTCTTCTACTGAAAAAWTTTTTTGATAAAGGGCTCAAAATTCTTTGGGGTTTTCTTACGTGGTCCTTTTCCAGCCACTTTAGGCTGCTGACTCCTGGTTTTTGGCATTTTAGTGAAATCTTGAAAAGCAATTGATCAAAGATAATTAATTGGGCAACTAGAGATAATGAGAATTGGAAGTTAAGATCCAATAGTTCAAAAAAAGGTGTGATTTGAAAAAAAAAACGGTTTATTGAAACAATCAAGTATAGATGGGCCAATCAGTGTACAATTTTCTATTGAGCTCGGACGAGCTGATGGAGAAAGCATTCATAGTAGAATCTATAGCAGAGAAGGACGTCGATTCAGCCGTCTCCAATGGAGCAACTGGAGCAGTAGCCATCTTCCATTCCTCCAGATCTTCTTCGATCATCTCAATCTTTCCTTTGTACATCGCGTTCTCCACTGAAACCATTATTTAAAAATATTTATTTTCATACAAGCCTGGTTGCCTCTGGACCTTCAAACAGCTAGCACCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>480 379 118 23</canonical_bands>
                <polymorphic_bands>480 379 141</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>283 249 101 98 91 70 26 24 23 17 14 4</canonical_bands>
                <polymorphic_bands>283 249 124 98 91 70 26 24 17 14 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAGAACTGAAATTTGCTACAT</pcr_primer_p1>
		<pcr_primer_p2>AATTGCTTTTCAAGATTTCACTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GCAGAACTGAAATTTGCTACATTTTTAAATTAACAAATCAATCAACTCACTTTTTTTCTGATGCTTGACAGCTAGAAGATGAGCTCTAACCAGCTTCCTTGAGATTTGGATAGGGTCTTCTACTGAAAAATTTTTTTGATAAAGGGCTCAAAATTCTTTGGGGTTTTCTTACGTGGTCCTTTTCCAGCCACTTTAGGCTGCTGACTCCTGGTTTTTGGCATTTTAGTGAAATCTTGAAAAGCAATT</canonical_amplicon>
		<polymorphic_amplicon>GCAGAACTGAAATTTGCTACATTTTTAAATTAACAAATCAATCAACTCACTTTTTTTCTGATGCTTGACAGCTAGAAGATGAGCTCTAACCAGCTTCCTTGAGATTTGGATAGGGTCTTCTACTGAAAAAWTTTTTTGATAAAGGGCTCAAAATTCTTTGGGGTTTTCTTACGTGGTCCTTTTCCAGCCACTTTAGGCTGCTGACTCCTGGTTTTTGGCATTTTAGTGAAATCTTGAAAAGCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31855</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>262531</contig_pos>
        <strand></strand>
        <context>ACTGAAAAAW[T/A]TTTTTGATAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGCTCTAACCAGCTTCCTTGAGATTTGGATAGGGTCTTCTACTGAAAAAT</left_flank>
        <right_flank>TTTTTGATAAAGGGCTCAAAATTCTTTGGGGTTTTCTTACGTGGTCCTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCTCTGAAAAAGGTTTATTAACATAATTTTTGCAGTAGAGCGCGGTGACGCCTACCTGTGATAGAAGGGCCTTCACATTGTCAAGTTTGAGCTCAATTATACTTATTCCTATGCAAGATATCTAGGATGTGTTAACTGATAAGATGTTTCTAATATTGTGATAATCATTTCTTCAGTTGACAACTTTTCTCTATCTTTGACGGGAACCGAGAAAGTTGTCTCAAAGTTAAAATGGAAGGAGCCCTTCTATAACAGGTTTTACACCTAACAATAGACTCACTCTTCTCCATTTCTTCATCAATATTTTTCATTCTAAAAAACGCACTGTCATACTGAAGCCTATGATGGCCGAGAACAGTACGAAGTCGCAGAACTGAAATTTGCTACATTTTTAAATTAACAAATCAATCAACTCACTTTTTTTCTGATGCTTGACAGCTAGAAGATGAGCTCTAACCAGCTTCCTTGAGATTTGGATAGGGTCTTCTACTGAAAAATTTTTTTGATAAAGGGCTCAAAATTCTTTGGGGTTTTCTTACGTGGTCCTTTTCCAGCCACTTTAGGCTGCTGACTCCTGGTTTTTGGCATTTTAGTGAAATCTTGAAAAGCAATTGATCAAAGATAATTAATTGGGCAACTAGAGATAATGAGAATTGGAAGTTAAGATCCAATAGTTCAAAAAAAGGTGTGATTTGAAAAAAAAAACGGTTTATTGAAACAATCAAGTATAGATGGGCCAATCAGTGTACAATTTTCTATTGAGCTCGGACGAGCTGATGGAGAAAGCATTCATAGTAGAATCTATAGCAGAGAAGGACGTCGATTCAGCCGTCTCCAATGGAGCAACTGGAGCAGTAGCCATCTTCCATTCCTCCAGATCTTCTTCGATCATCTCAATCTTTCCTTTGTACATCGCGTTCTCCACTGAAACCATTATTTAAAAATATTTATTTTCATACAAGCCTGGTTGCCTCTGGACCTTCAAACAGCTAGCACCCG</canonical>
            <polymorphic>CGCTCTGAAAAAGGTTTATTAACATAATTTTTGCAGTAGAGCGCGGTGACGCCTACCTGTGATAGAAGGGCCTTCACATTGTCAAGTTTGAGCTCAATTATACTTATTCCTATGCAAGATATCTAGGATGTGTTAACTGATAAGATGTTTCTAATATTGTGATAATCATTTCTTCAGTTGACAACTTTTCTCTATCTTTGACGGGAACCGAGAAAGTTGTCTCAAAGTTAAAATGGAAGGAGCCCTTCTATAACAGGTTTTACACCTAACAATAGACTCACTCTTCTCCATTTCTTCATCAATATTTTTCATTCTAAAAAACGCACTGTCATACTGAAGCCTATGATGGCCGAGAACAGTACGAAGTCGCAGAACTGAAATTTGCTACATTTTTAAATTAACAAATCAATCAACTCACTTTTTTTCTGATGCTTGACAGCTAGAAGATGAGCTCTAACCAGCTTCCTTGAGATTTGGATAGGGTCTTCTACTGAAAAATWTTTTTGATAAAGGGCTCAAAATTCTTTGGGGTTTTCTTACGTGGTCCTTTTCCAGCCACTTTAGGCTGCTGACTCCTGGTTTTTGGCATTTTAGTGAAATCTTGAAAAGCAATTGATCAAAGATAATTAATTGGGCAACTAGAGATAATGAGAATTGGAAGTTAAGATCCAATAGTTCAAAAAAAGGTGTGATTTGAAAAAAAAAACGGTTTATTGAAACAATCAAGTATAGATGGGCCAATCAGTGTACAATTTTCTATTGAGCTCGGACGAGCTGATGGAGAAAGCATTCATAGTAGAATCTATAGCAGAGAAGGACGTCGATTCAGCCGTCTCCAATGGAGCAACTGGAGCAGTAGCCATCTTCCATTCCTCCAGATCTTCTTCGATCATCTCAATCTTTCCTTTGTACATCGCGTTCTCCACTGAAACCATTATTTAAAAATATTTATTTTCATACAAGCCTGGTTGCCTCTGGACCTTCAAACAGCTAGCACCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>481 378 118 23</canonical_bands>
                <polymorphic_bands>481 378 141</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>283 250 101 98 91 70 25 24 23 17 14 4</canonical_bands>
                <polymorphic_bands>283 250 124 98 91 70 25 24 17 14 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAGAACTGAAATTTGCTACAT</pcr_primer_p1>
		<pcr_primer_p2>AATTGCTTTTCAAGATTTCACTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GCAGAACTGAAATTTGCTACATTTTTAAATTAACAAATCAATCAACTCACTTTTTTTCTGATGCTTGACAGCTAGAAGATGAGCTCTAACCAGCTTCCTTGAGATTTGGATAGGGTCTTCTACTGAAAAATTTTTTTGATAAAGGGCTCAAAATTCTTTGGGGTTTTCTTACGTGGTCCTTTTCCAGCCACTTTAGGCTGCTGACTCCTGGTTTTTGGCATTTTAGTGAAATCTTGAAAAGCAATT</canonical_amplicon>
		<polymorphic_amplicon>GCAGAACTGAAATTTGCTACATTTTTAAATTAACAAATCAATCAACTCACTTTTTTTCTGATGCTTGACAGCTAGAAGATGAGCTCTAACCAGCTTCCTTGAGATTTGGATAGGGTCTTCTACTGAAAAATWTTTTTGATAAAGGGCTCAAAATTCTTTGGGGTTTTCTTACGTGGTCCTTTTCCAGCCACTTTAGGCTGCTGACTCCTGGTTTTTGGCATTTTAGTGAAATCTTGAAAAGCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31856</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>262554</contig_pos>
        <strand></strand>
        <context>GGCTCAAAAT[T/C]CTTTGGGGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTGGATAGGGTCTTCTACTGAAAAATTTTTTTGATAAAGGGCTCAAAAT</left_flank>
        <right_flank>CTTTGGGGTTTTCTTACGTGGTCCTTTTCCAGCCACTTTAGGCTGCTGAC</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAATTTTTGCAGTAGAGCGCGGTGACGCCTACCTGTGATAGAAGGGCCTTCACATTGTCAAGTTTGAGCTCAATTATACTTATTCCTATGCAAGATATCTAGGATGTGTTAACTGATAAGATGTTTCTAATATTGTGATAATCATTTCTTCAGTTGACAACTTTTCTCTATCTTTGACGGGAACCGAGAAAGTTGTCTCAAAGTTAAAATGGAAGGAGCCCTTCTATAACAGGTTTTACACCTAACAATAGACTCACTCTTCTCCATTTCTTCATCAATATTTTTCATTCTAAAAAACGCACTGTCATACTGAAGCCTATGATGGCCGAGAACAGTACGAAGTCGCAGAACTGAAATTTGCTACATTTTTAAATTAACAAATCAATCAACTCACTTTTTTTCTGATGCTTGACAGCTAGAAGATGAGCTCTAACCAGCTTCCTTGAGATTTGGATAGGGTCTTCTACTGAAAAATTTTTTTGATAAAGGGCTCAAAATTCTTTGGGGTTTTCTTACGTGGTCCTTTTCCAGCCACTTTAGGCTGCTGACTCCTGGTTTTTGGCATTTTAGTGAAATCTTGAAAAGCAATTGATCAAAGATAATTAATTGGGCAACTAGAGATAATGAGAATTGGAAGTTAAGATCCAATAGTTCAAAAAAAGGTGTGATTTGAAAAAAAAAACGGTTTATTGAAACAATCAAGTATAGATGGGCCAATCAGTGTACAATTTTCTATTGAGCTCGGACGAGCTGATGGAGAAAGCATTCATAGTAGAATCTATAGCAGAGAAGGACGTCGATTCAGCCGTCTCCAATGGAGCAACTGGAGCAGTAGCCATCTTCCATTCCTCCAGATCTTCTTCGATCATCTCAATCTTTCCTTTGTACATCGCGTTCTCCACTGAAACCATTATTTAAAAATATTTATTTTCATACAAGCCTGGTTGCCTCTGGACCTTCAAACAGCTAGCACCCGACCGATGCCTGCACTTCGAGCTC</canonical>
            <polymorphic>ATAATTTTTGCAGTAGAGCGCGGTGACGCCTACCTGTGATAGAAGGGCCTTCACATTGTCAAGTTTGAGCTCAATTATACTTATTCCTATGCAAGATATCTAGGATGTGTTAACTGATAAGATGTTTCTAATATTGTGATAATCATTTCTTCAGTTGACAACTTTTCTCTATCTTTGACGGGAACCGAGAAAGTTGTCTCAAAGTTAAAATGGAAGGAGCCCTTCTATAACAGGTTTTACACCTAACAATAGACTCACTCTTCTCCATTTCTTCATCAATATTTTTCATTCTAAAAAACGCACTGTCATACTGAAGCCTATGATGGCCGAGAACAGTACGAAGTCGCAGAACTGAAATTTGCTACATTTTTAAATTAACAAATCAATCAACTCACTTTTTTTCTGATGCTTGACAGCTAGAAGATGAGCTCTAACCAGCTTCCTTGAGATTTGGATAGGGTCTTCTACTGAAAAATTTTTTTGATAAAGGGCTCAAAATYCTTTGGGGTTTTCTTACGTGGTCCTTTTCCAGCCACTTTAGGCTGCTGACTCCTGGTTTTTGGCATTTTAGTGAAATCTTGAAAAGCAATTGATCAAAGATAATTAATTGGGCAACTAGAGATAATGAGAATTGGAAGTTAAGATCCAATAGTTCAAAAAAAGGTGTGATTTGAAAAAAAAAACGGTTTATTGAAACAATCAAGTATAGATGGGCCAATCAGTGTACAATTTTCTATTGAGCTCGGACGAGCTGATGGAGAAAGCATTCATAGTAGAATCTATAGCAGAGAAGGACGTCGATTCAGCCGTCTCCAATGGAGCAACTGGAGCAGTAGCCATCTTCCATTCCTCCAGATCTTCTTCGATCATCTCAATCTTTCCTTTGTACATCGCGTTCTCCACTGAAACCATTATTTAAAAATATTTATTTTCATACAAGCCTGGTTGCCTCTGGACCTTCAAACAGCTAGCACCCGACCGATGCCTGCACTTCGAGCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>504 355 118 23</canonical_bands>
                <polymorphic_bands>527 355 118</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>283 273 101 98 91 70 24 23 17 14 4 2</canonical_bands>
                <polymorphic_bands>283 273 114 101 98 70 24 17 14 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAGAACTGAAATTTGCTACAT</pcr_primer_p1>
		<pcr_primer_p2>AATTGCTTTTCAAGATTTCACTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GCAGAACTGAAATTTGCTACATTTTTAAATTAACAAATCAATCAACTCACTTTTTTTCTGATGCTTGACAGCTAGAAGATGAGCTCTAACCAGCTTCCTTGAGATTTGGATAGGGTCTTCTACTGAAAAATTTTTTTGATAAAGGGCTCAAAATTCTTTGGGGTTTTCTTACGTGGTCCTTTTCCAGCCACTTTAGGCTGCTGACTCCTGGTTTTTGGCATTTTAGTGAAATCTTGAAAAGCAATT</canonical_amplicon>
		<polymorphic_amplicon>GCAGAACTGAAATTTGCTACATTTTTAAATTAACAAATCAATCAACTCACTTTTTTTCTGATGCTTGACAGCTAGAAGATGAGCTCTAACCAGCTTCCTTGAGATTTGGATAGGGTCTTCTACTGAAAAATTTTTTTGATAAAGGGCTCAAAATYCTTTGGGGTTTTCTTACGTGGTCCTTTTCCAGCCACTTTAGGCTGCTGACTCCTGGTTTTTGGCATTTTAGTGAAATCTTGAAAAGCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31857</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>262621</contig_pos>
        <strand></strand>
        <context>TTTTTGGCAT[T/G]TTAGTGAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CGTGGTCCTTTTCCAGCCACTTTAGGCTGCTGACTCCTGGTTTTTGGCAT</left_flank>
        <right_flank>TTAGTGAAATCTTGAAAAGCAATTGATCAAAGATAATTAATTGGGCAACT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTCAATTATACTTATTCCTATGCAAGATATCTAGGATGTGTTAACTGATAAGATGTTTCTAATATTGTGATAATCATTTCTTCAGTTGACAACTTTTCTCTATCTTTGACGGGAACCGAGAAAGTTGTCTCAAAGTTAAAATGGAAGGAGCCCTTCTATAACAGGTTTTACACCTAACAATAGACTCACTCTTCTCCATTTCTTCATCAATATTTTTCATTCTAAAAAACGCACTGTCATACTGAAGCCTATGATGGCCGAGAACAGTACGAAGTCGCAGAACTGAAATTTGCTACATTTTTAAATTAACAAATCAATCAACTCACTTTTTTTCTGATGCTTGACAGCTAGAAGATGAGCTCTAACCAGCTTCCTTGAGATTTGGATAGGGTCTTCTACTGAAAAATTTTTTTGATAAAGGGCTCAAAATTCTTTGGGGTTTTCTTACGTGGTCCTTTTCCAGCCACTTTAGGCTGCTGACTCCTGGTTTTTGGCATTTTAGTGAAATCTTGAAAAGCAATTGATCAAAGATAATTAATTGGGCAACTAGAGATAATGAGAATTGGAAGTTAAGATCCAATAGTTCAAAAAAAGGTGTGATTTGAAAAAAAAAACGGTTTATTGAAACAATCAAGTATAGATGGGCCAATCAGTGTACAATTTTCTATTGAGCTCGGACGAGCTGATGGAGAAAGCATTCATAGTAGAATCTATAGCAGAGAAGGACGTCGATTCAGCCGTCTCCAATGGAGCAACTGGAGCAGTAGCCATCTTCCATTCCTCCAGATCTTCTTCGATCATCTCAATCTTTCCTTTGTACATCGCGTTCTCCACTGAAACCATTATTTAAAAATATTTATTTTCATACAAGCCTGGTTGCCTCTGGACCTTCAAACAGCTAGCACCCGACCGATGCCTGCACTTCGAGCTCAATTATCTCGGTTCTCTCAAAAGATATCGAAAATTAATCAATTGATAAAAAATTGGTGATATTTTGA</canonical>
            <polymorphic>AGCTCAATTATACTTATTCCTATGCAAGATATCTAGGATGTGTTAACTGATAAGATGTTTCTAATATTGTGATAATCATTTCTTCAGTTGACAACTTTTCTCTATCTTTGACGGGAACCGAGAAAGTTGTCTCAAAGTTAAAATGGAAGGAGCCCTTCTATAACAGGTTTTACACCTAACAATAGACTCACTCTTCTCCATTTCTTCATCAATATTTTTCATTCTAAAAAACGCACTGTCATACTGAAGCCTATGATGGCCGAGAACAGTACGAAGTCGCAGAACTGAAATTTGCTACATTTTTAAATTAACAAATCAATCAACTCACTTTTTTTCTGATGCTTGACAGCTAGAAGATGAGCTCTAACCAGCTTCCTTGAGATTTGGATAGGGTCTTCTACTGAAAAATTTTTTTGATAAAGGGCTCAAAATTCTTTGGGGTTTTCTTACGTGGTCCTTTTCCAGCCACTTTAGGCTGCTGACTCCTGGTTTTTGGCATKTTAGTGAAATCTTGAAAAGCAATTGATCAAAGATAATTAATTGGGCAACTAGAGATAATGAGAATTGGAAGTTAAGATCCAATAGTTCAAAAAAAGGTGTGATTTGAAAAAAAAAACGGTTTATTGAAACAATCAAGTATAGATGGGCCAATCAGTGTACAATTTTCTATTGAGCTCGGACGAGCTGATGGAGAAAGCATTCATAGTAGAATCTATAGCAGAGAAGGACGTCGATTCAGCCGTCTCCAATGGAGCAACTGGAGCAGTAGCCATCTTCCATTCCTCCAGATCTTCTTCGATCATCTCAATCTTTCCTTTGTACATCGCGTTCTCCACTGAAACCATTATTTAAAAATATTTATTTTCATACAAGCCTGGTTGCCTCTGGACCTTCAAACAGCTAGCACCCGACCGATGCCTGCACTTCGAGCTCAATTATCTCGGTTCTCTCAAAAGATATCGAAAATTAATCAATTGATAAAAAATTGGTGATATTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAGCTAGAAGATGAGCTCTAA</pcr_primer_p1>
		<pcr_primer_p2>GGATCTTAACTTCCAATTCTCAT</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>GACAGCTAGAAGATGAGCTCTAACCAGCTTCCTTGAGATTTGGATAGGGTCTTCTACTGAAAAATTTTTTTGATAAAGGGCTCAAAATTCTTTGGGGTTTTCTTACGTGGTCCTTTTCCAGCCACTTTAGGCTGCTGACTCCTGGTTTTTGGCATTTTAGTGAAATCTTGAAAAGCAATTGATCAAAGATAATTAATTGGGCAACTAGAGATAATGAGAATTGGAAGTTAAGATCC</canonical_amplicon>
		<polymorphic_amplicon>GACAGCTAGAAGATGAGCTCTAACCAGCTTCCTTGAGATTTGGATAGGGTCTTCTACTGAAAAATTTTTTTGATAAAGGGCTCAAAATTCTTTGGGGTTTTCTTACGTGGTCCTTTTCCAGCCACTTTAGGCTGCTGACTCCTGGTTTTTGGCATKTTAGTGAAATCTTGAAAAGCAATTGATCAAAGATAATTAATTGGGCAACTAGAGATAATGAGAATTGGAAGTTAAGATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31858</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>262673</contig_pos>
        <strand></strand>
        <context>TGGGCAACTA[G/A]AGATAATGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAGTGAAATCTTGAAAAGCAATTGATCAAAGATAATTAATTGGGCAACTA</left_flank>
        <right_flank>AGATAATGAGAATTGGAAGTTAAGATCCAATAGTTCAAAAAAAGGTGTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATGTTTCTAATATTGTGATAATCATTTCTTCAGTTGACAACTTTTCTCTATCTTTGACGGGAACCGAGAAAGTTGTCTCAAAGTTAAAATGGAAGGAGCCCTTCTATAACAGGTTTTACACCTAACAATAGACTCACTCTTCTCCATTTCTTCATCAATATTTTTCATTCTAAAAAACGCACTGTCATACTGAAGCCTATGATGGCCGAGAACAGTACGAAGTCGCAGAACTGAAATTTGCTACATTTTTAAATTAACAAATCAATCAACTCACTTTTTTTCTGATGCTTGACAGCTAGAAGATGAGCTCTAACCAGCTTCCTTGAGATTTGGATAGGGTCTTCTACTGAAAAATTTTTTTGATAAAGGGCTCAAAATTCTTTGGGGTTTTCTTACGTGGTCCTTTTCCAGCCACTTTAGGCTGCTGACTCCTGGTTTTTGGCATTTTAGTGAAATCTTGAAAAGCAATTGATCAAAGATAATTAATTGGGCAACTAGAGATAATGAGAATTGGAAGTTAAGATCCAATAGTTCAAAAAAAGGTGTGATTTGAAAAAAAAAACGGTTTATTGAAACAATCAAGTATAGATGGGCCAATCAGTGTACAATTTTCTATTGAGCTCGGACGAGCTGATGGAGAAAGCATTCATAGTAGAATCTATAGCAGAGAAGGACGTCGATTCAGCCGTCTCCAATGGAGCAACTGGAGCAGTAGCCATCTTCCATTCCTCCAGATCTTCTTCGATCATCTCAATCTTTCCTTTGTACATCGCGTTCTCCACTGAAACCATTATTTAAAAATATTTATTTTCATACAAGCCTGGTTGCCTCTGGACCTTCAAACAGCTAGCACCCGACCGATGCCTGCACTTCGAGCTCAATTATCTCGGTTCTCTCAAAAGATATCGAAAATTAATCAATTGATAAAAAATTGGTGATATTTTGATGAATAATTCATTAGTTGAAATGTTTTTGATATCTGTTGGAGGAAGCGAGAT</canonical>
            <polymorphic>AGATGTTTCTAATATTGTGATAATCATTTCTTCAGTTGACAACTTTTCTCTATCTTTGACGGGAACCGAGAAAGTTGTCTCAAAGTTAAAATGGAAGGAGCCCTTCTATAACAGGTTTTACACCTAACAATAGACTCACTCTTCTCCATTTCTTCATCAATATTTTTCATTCTAAAAAACGCACTGTCATACTGAAGCCTATGATGGCCGAGAACAGTACGAAGTCGCAGAACTGAAATTTGCTACATTTTTAAATTAACAAATCAATCAACTCACTTTTTTTCTGATGCTTGACAGCTAGAAGATGAGCTCTAACCAGCTTCCTTGAGATTTGGATAGGGTCTTCTACTGAAAAATTTTTTTGATAAAGGGCTCAAAATTCTTTGGGGTTTTCTTACGTGGTCCTTTTCCAGCCACTTTAGGCTGCTGACTCCTGGTTTTTGGCATTTTAGTGAAATCTTGAAAAGCAATTGATCAAAGATAATTAATTGGGCAACTARAGATAATGAGAATTGGAAGTTAAGATCCAATAGTTCAAAAAAAGGTGTGATTTGAAAAAAAAAACGGTTTATTGAAACAATCAAGTATAGATGGGCCAATCAGTGTACAATTTTCTATTGAGCTCGGACGAGCTGATGGAGAAAGCATTCATAGTAGAATCTATAGCAGAGAAGGACGTCGATTCAGCCGTCTCCAATGGAGCAACTGGAGCAGTAGCCATCTTCCATTCCTCCAGATCTTCTTCGATCATCTCAATCTTTCCTTTGTACATCGCGTTCTCCACTGAAACCATTATTTAAAAATATTTATTTTCATACAAGCCTGGTTGCCTCTGGACCTTCAAACAGCTAGCACCCGACCGATGCCTGCACTTCGAGCTCAATTATCTCGGTTCTCTCAAAAGATATCGAAAATTAATCAATTGATAAAAAATTGGTGATATTTTGATGAATAATTCATTAGTTGAAATGTTTTTGATATCTGTTGGAGGAAGCGAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>352 298 199 151</canonical_bands>
                <polymorphic_bands>551 298 151</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGATAAAGGGCTCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>ACTGATTGGCCCATCTATACT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTTGATAAAGGGCTCAAAATTCTTTGGGGTTTTCTTACGTGGTCCTTTTCCAGCCACTTTAGGCTGCTGACTCCTGGTTTTTGGCATTTTAGTGAAATCTTGAAAAGCAATTGATCAAAGATAATTAATTGGGCAACTAGAGATAATGAGAATTGGAAGTTAAGATCCAATAGTTCAAAAAAAGGTGTGATTTGAAAAAAAAAACGGTTTATTGAAACAATCAAGTATAGATGGGCCAATCAGT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGATAAAGGGCTCAAAATTCTTTGGGGTTTTCTTACGTGGTCCTTTTCCAGCCACTTTAGGCTGCTGACTCCTGGTTTTTGGCATTTTAGTGAAATCTTGAAAAGCAATTGATCAAAGATAATTAATTGGGCAACTARAGATAATGAGAATTGGAAGTTAAGATCCAATAGTTCAAAAAAAGGTGTGATTTGAAAAAAAAAACGGTTTATTGAAACAATCAAGTATAGATGGGCCAATCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31866</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>269211</contig_pos>
        <strand></strand>
        <context>CCGAACTGAA[G/A]TTAGAAATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CCGTTTGCCTTTGTGCTTCCCGGATTTTTCTCTCCAAATCCCGAACTGAA</left_flank>
        <right_flank>TTAGAAATTTTATATCATGAAACCTTTAATAGAATGGCCCCTAAACTTTA</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCTTGCATGAGCTCGTCTGGAAATCACAGATAATTTCTACAGGCTGAGGGAGATATTTACCATTCCGAACGAGCTGAGCGGCACGAATCTCTTCATTGGCTCTCTCATCCACTGAAAGATTCACAGATTTTTGAATCATGTTTTGAAGAAAGTAAATGTTTAGGCTTCCATTTTCGGGCGTCGCTGGCAACTTCTGATCGGAGGTTGATCTCAAGGTTCCGACCTAGTACTATGTCACCTGTCATCTTCCGACCAGAATTTGACCGTGGCCGGCTTTACAGCCGTTTTTGGGCAACTTTCGACCAGAACATGGCCAATATCCGTCAAAAATTCCTTCAAATTTCTGACCAGAAGTTACAAGCCGAGCTGTCACAATAATTTCAGATTTTTAACGACTTACATTCTCTCAAAACTTCCTCGCGCTCACGCAAGGCATGACGAGCCCTCTCCGTTTGCCTTTGTGCTTCCCGGATTTTTCTCTCCAAATCCCGAACTGAAGTTAGAAATTTTATATCATGAAACCTTTAATAGAATGGCCCCTAAACTTTAGAAAGTTGGCTTAAAGTTTAAAGTTAGAAGCCTTTCTATTAAAGGTTTTACGGTATACATGTTTTTAACAAAAAAACTCACTTTCGGCTTCTGGGTCGTATGGCATTTTTTCCTGCAGTTGAGCGCTGATGAAGATTTTCTGAAAATTTTTAACCTTTGGGTGGAGGAAAACGAGTTGGATTCAAAATGAGAAAGAAAGATCGATCGATGCACCACATTTGGTTTTTTTTTTTGAAATCACAGTTTTTAATTATAATTGAAACTTAAGGTTTGCCACAAATAGCGAAAACTCGGCCAACAAATGTATCGATATGGCCTATGGAAGAAAGTAATGAAAAATCGAAGAAAAATAAGAAAGGACTGTTTGTTAGAAGACTTTCTCCAACTATATCAAAGTTCCATGGAATTTCATGCATTTGGGTATGAGCTATAGCTTCTGAGAACATTTGA</canonical>
            <polymorphic>CGCTTGCATGAGCTCGTCTGGAAATCACAGATAATTTCTACAGGCTGAGGGAGATATTTACCATTCCGAACGAGCTGAGCGGCACGAATCTCTTCATTGGCTCTCTCATCCACTGAAAGATTCACAGATTTTTGAATCATGTTTTGAAGAAAGTAAATGTTTAGGCTTCCATTTTCGGGCGTCGCTGGCAACTTCTGATCGGAGGTTGATCTCAAGGTTCCGACCTAGTACTATGTCACCTGTCATCTTCCGACCAGAATTTGACCGTGGCCGGCTTTACAGCCGTTTTTGGGCAACTTTCGACCAGAACATGGCCAATATCCGTCAAAAATTCCTTCAAATTTCTGACCAGAAGTTACAAGCCGAGCTGTCACAATAATTTCAGATTTTTAACGACTTACATTCTCTCAAAACTTCCTCGCGCTCACGCAAGGCATGACGAGCCCTCTCCGTTTGCCTTTGTGCTTCCCGGATTTTTCTCTCCAAATCCCGAACTGAARTTAGAAATTTTATATCATGAAACCTTTAATAGAATGGCCCCTAAACTTTAGAAAGTTGGCTTAAAGTTTAAAGTTAGAAGCCTTTCTATTAAAGGTTTTACGGTATACATGTTTTTAACAAAAAAACTCACTTTCGGCTTCTGGGTCGTATGGCATTTTTTCCTGCAGTTGAGCGCTGATGAAGATTTTCTGAAAATTTTTAACCTTTGGGTGGAGGAAAACGAGTTGGATTCAAAATGAGAAAGAAAGATCGATCGATGCACCACATTTGGTTTTTTTTTTTGAAATCACAGTTTTTAATTATAATTGAAACTTAAGGTTTGCCACAAATAGCGAAAACTCGGCCAACAAATGTATCGATATGGCCTATGGAAGAAAGTAATGAAAAATCGAAGAAAAATAAGAAAGGACTGTTTGTTAGAAGACTTTCTCCAACTATATCAAAGTTCCATGGAATTTCATGCATTTGGGTATGAGCTATAGCTTCTGAGAACATTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAACGACTTACATTCTCTCAAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAGCCGAAAGTGAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTTAACGACTTACATTCTCTCAAAACTTCCTCGCGCTCACGCAAGGCATGACGAGCCCTCTCCGTTTGCCTTTGTGCTTCCCGGATTTTTCTCTCCAAATCCCGAACTGAAGTTAGAAATTTTATATCATGAAACCTTTAATAGAATGGCCCCTAAACTTTAGAAAGTTGGCTTAAAGTTTAAAGTTAGAAGCCTTTCTATTAAAGGTTTTACGGTATACATGTTTTTAACAAAAAAACTCACTTTCGGCTTCT</canonical_amplicon>
		<polymorphic_amplicon>TTTAACGACTTACATTCTCTCAAAACTTCCTCGCGCTCACGCAAGGCATGACGAGCCCTCTCCGTTTGCCTTTGTGCTTCCCGGATTTTTCTCTCCAAATCCCGAACTGAARTTAGAAATTTTATATCATGAAACCTTTAATAGAATGGCCCCTAAACTTTAGAAAGTTGGCTTAAAGTTTAAAGTTAGAAGCCTTTCTATTAAAGGTTTTACGGTATACATGTTTTTAACAAAAAAACTCACTTTCGGCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31867</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>269246</contig_pos>
        <strand></strand>
        <context>TTTAATAGAA[T/G]GGCCCCTAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AAATCCCGAACTGAAGTTAGAAATTTTATATCATGAAACCTTTAATAGAA</left_flank>
        <right_flank>GGCCCCTAAACTTTAGAAAGTTGGCTTAAAGTTTAAAGTTAGAAGCCTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTACAGGCTGAGGGAGATATTTACCATTCCGAACGAGCTGAGCGGCACGAATCTCTTCATTGGCTCTCTCATCCACTGAAAGATTCACAGATTTTTGAATCATGTTTTGAAGAAAGTAAATGTTTAGGCTTCCATTTTCGGGCGTCGCTGGCAACTTCTGATCGGAGGTTGATCTCAAGGTTCCGACCTAGTACTATGTCACCTGTCATCTTCCGACCAGAATTTGACCGTGGCCGGCTTTACAGCCGTTTTTGGGCAACTTTCGACCAGAACATGGCCAATATCCGTCAAAAATTCCTTCAAATTTCTGACCAGAAGTTACAAGCCGAGCTGTCACAATAATTTCAGATTTTTAACGACTTACATTCTCTCAAAACTTCCTCGCGCTCACGCAAGGCATGACGAGCCCTCTCCGTTTGCCTTTGTGCTTCCCGGATTTTTCTCTCCAAATCCCGAACTGAAGTTAGAAATTTTATATCATGAAACCTTTAATAGAATGGCCCCTAAACTTTAGAAAGTTGGCTTAAAGTTTAAAGTTAGAAGCCTTTCTATTAAAGGTTTTACGGTATACATGTTTTTAACAAAAAAACTCACTTTCGGCTTCTGGGTCGTATGGCATTTTTTCCTGCAGTTGAGCGCTGATGAAGATTTTCTGAAAATTTTTAACCTTTGGGTGGAGGAAAACGAGTTGGATTCAAAATGAGAAAGAAAGATCGATCGATGCACCACATTTGGTTTTTTTTTTTGAAATCACAGTTTTTAATTATAATTGAAACTTAAGGTTTGCCACAAATAGCGAAAACTCGGCCAACAAATGTATCGATATGGCCTATGGAAGAAAGTAATGAAAAATCGAAGAAAAATAAGAAAGGACTGTTTGTTAGAAGACTTTCTCCAACTATATCAAAGTTCCATGGAATTTCATGCATTTGGGTATGAGCTATAGCTTCTGAGAACATTTGAAAGTTATCGGAAATTCCGGGTGGAAGAAGTTTTGA</canonical>
            <polymorphic>TTCTACAGGCTGAGGGAGATATTTACCATTCCGAACGAGCTGAGCGGCACGAATCTCTTCATTGGCTCTCTCATCCACTGAAAGATTCACAGATTTTTGAATCATGTTTTGAAGAAAGTAAATGTTTAGGCTTCCATTTTCGGGCGTCGCTGGCAACTTCTGATCGGAGGTTGATCTCAAGGTTCCGACCTAGTACTATGTCACCTGTCATCTTCCGACCAGAATTTGACCGTGGCCGGCTTTACAGCCGTTTTTGGGCAACTTTCGACCAGAACATGGCCAATATCCGTCAAAAATTCCTTCAAATTTCTGACCAGAAGTTACAAGCCGAGCTGTCACAATAATTTCAGATTTTTAACGACTTACATTCTCTCAAAACTTCCTCGCGCTCACGCAAGGCATGACGAGCCCTCTCCGTTTGCCTTTGTGCTTCCCGGATTTTTCTCTCCAAATCCCGAACTGAAGTTAGAAATTTTATATCATGAAACCTTTAATAGAAKGGCCCCTAAACTTTAGAAAGTTGGCTTAAAGTTTAAAGTTAGAAGCCTTTCTATTAAAGGTTTTACGGTATACATGTTTTTAACAAAAAAACTCACTTTCGGCTTCTGGGTCGTATGGCATTTTTTCCTGCAGTTGAGCGCTGATGAAGATTTTCTGAAAATTTTTAACCTTTGGGTGGAGGAAAACGAGTTGGATTCAAAATGAGAAAGAAAGATCGATCGATGCACCACATTTGGTTTTTTTTTTTGAAATCACAGTTTTTAATTATAATTGAAACTTAAGGTTTGCCACAAATAGCGAAAACTCGGCCAACAAATGTATCGATATGGCCTATGGAAGAAAGTAATGAAAAATCGAAGAAAAATAAGAAAGGACTGTTTGTTAGAAGACTTTCTCCAACTATATCAAAGTTCCATGGAATTTCATGCATTTGGGTATGAGCTATAGCTTCTGAGAACATTTGAAAGTTATCGGAAATTCCGGGTGGAAGAAGTTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAACGACTTACATTCTCTCAAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAGCCGAAAGTGAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTTAACGACTTACATTCTCTCAAAACTTCCTCGCGCTCACGCAAGGCATGACGAGCCCTCTCCGTTTGCCTTTGTGCTTCCCGGATTTTTCTCTCCAAATCCCGAACTGAAGTTAGAAATTTTATATCATGAAACCTTTAATAGAATGGCCCCTAAACTTTAGAAAGTTGGCTTAAAGTTTAAAGTTAGAAGCCTTTCTATTAAAGGTTTTACGGTATACATGTTTTTAACAAAAAAACTCACTTTCGGCTTCT</canonical_amplicon>
		<polymorphic_amplicon>TTTAACGACTTACATTCTCTCAAAACTTCCTCGCGCTCACGCAAGGCATGACGAGCCCTCTCCGTTTGCCTTTGTGCTTCCCGGATTTTTCTCTCCAAATCCCGAACTGAAGTTAGAAATTTTATATCATGAAACCTTTAATAGAAKGGCCCCTAAACTTTAGAAAGTTGGCTTAAAGTTTAAAGTTAGAAGCCTTTCTATTAAAGGTTTTACGGTATACATGTTTTTAACAAAAAAACTCACTTTCGGCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31868</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>269417</contig_pos>
        <strand></strand>
        <context>ATTTTTAACC[T/G]TTGGGTSGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTTTTTCCTGCAGTTGAGCGCTGATGAAGATTTTCTGAAAATTTTTAACC</left_flank>
        <right_flank>TTGGGTGGAGGAAAACGAGTTGGATTCAAAATGAGAAAGAAAGATCGATC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATCTCAAGGTTCCGACCTAGTACTATGTCACCTGTCATCTTCCGACCAGAATTTGACCGTGGCCGGCTTTACAGCCGTTTTTGGGCAACTTTCGACCAGAACATGGCCAATATCCGTCAAAAATTCCTTCAAATTTCTGACCAGAAGTTACAAGCCGAGCTGTCACAATAATTTCAGATTTTTAACGACTTACATTCTCTCAAAACTTCCTCGCGCTCACGCAAGGCATGACGAGCCCTCTCCGTTTGCCTTTGTGCTTCCCGGATTTTTCTCTCCAAATCCCGAACTGAAGTTAGAAATTTTATATCATGAAACCTTTAATAGAATGGCCCCTAAACTTTAGAAAGTTGGCTTAAAGTTTAAAGTTAGAAGCCTTTCTATTAAAGGTTTTACGGTATACATGTTTTTAACAAAAAAACTCACTTTCGGCTTCTGGGTCGTATGGCATTTTTTCCTGCAGTTGAGCGCTGATGAAGATTTTCTGAAAATTTTTAACCTTTGGGTGGAGGAAAACGAGTTGGATTCAAAATGAGAAAGAAAGATCGATCGATGCACCACATTTGGTTTTTTTTTTTGAAATCACAGTTTTTAATTATAATTGAAACTTAAGGTTTGCCACAAATAGCGAAAACTCGGCCAACAAATGTATCGATATGGCCTATGGAAGAAAGTAATGAAAAATCGAAGAAAAATAAGAAAGGACTGTTTGTTAGAAGACTTTCTCCAACTATATCAAAGTTCCATGGAATTTCATGCATTTGGGTATGAGCTATAGCTTCTGAGAACATTTGAAAGTTATCGGAAATTCCGGGTGGAAGAAGTTTTGACACTTCTCGGCCACTGCCCACCAGCTGGCGGCCGTGGAGGCTCAGAGAAATAGAGACCTCTTCTTCTTCCTCTTGTTTGTTGGCTGGCAACAGAAGGCGATTAGCGTTGCGTGTGTATGTGTATGTAAGTAAGAAGAAGAAGAAGAAGAAGGAGAGGAACGATGTGTGAAC</canonical>
            <polymorphic>TGATCTCAAGGTTCCGACCTAGTACTATGTCACCTGTCATCTTCCGACCAGAATTTGACCGTGGCCGGCTTTACAGCCGTTTTTGGGCAACTTTCGACCAGAACATGGCCAATATCCGTCAAAAATTCCTTCAAATTTCTGACCAGAAGTTACAAGCCGAGCTGTCACAATAATTTCAGATTTTTAACGACTTACATTCTCTCAAAACTTCCTCGCGCTCACGCAAGGCATGACGAGCCCTCTCCGTTTGCCTTTGTGCTTCCCGGATTTTTCTCTCCAAATCCCGAACTGAAGTTAGAAATTTTATATCATGAAACCTTTAATAGAATGGCCCCTAAACTTTAGAAAGTTGGCTTAAAGTTTAAAGTTAGAAGCCTTTCTATTAAAGGTTTTACGGTATACATGTTTTTAACAAAAAAACTCACTTTCGGCTTCTGGGTCGTATGGCATTTTTTCCTGCAGTTGAGCGCTGATGAAGATTTTCTGAAAATTTTTAACCKTTGGGTGGAGGAAAACGAGTTGGATTCAAAATGAGAAAGAAAGATCGATCGATGCACCACATTTGGTTTTTTTTTTTGAAATCACAGTTTTTAATTATAATTGAAACTTAAGGTTTGCCACAAATAGCGAAAACTCGGCCAACAAATGTATCGATATGGCCTATGGAAGAAAGTAATGAAAAATCGAAGAAAAATAAGAAAGGACTGTTTGTTAGAAGACTTTCTCCAACTATATCAAAGTTCCATGGAATTTCATGCATTTGGGTATGAGCTATAGCTTCTGAGAACATTTGAAAGTTATCGGAAATTCCGGGTGGAAGAAGTTTTGACACTTCTCGGCCACTGCCCACCAGCTGGCGGCCGTGGAGGCTCAGAGAAATAGAGACCTCTTCTTCTTCCTCTTGTTTGTTGGCTGGCAACAGAAGGCGATTAGCGTTGCGTGTGTATGTGTATGTAAGTAAGAAGAAGAAGAAGAAGAAGGAGAGGAACGATGTGTGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTCACTTTCGGCTTCT</pcr_primer_p1>
		<pcr_primer_p2>CATAGGCCATATCGATACATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAACTCACTTTCGGCTTCTGGGTCGTATGGCATTTTTTCCTGCAGTTGAGCGCTGATGAAGATTTTCTGAAAATTTTTAACCTTTGGGTGGAGGAAAACGAGTTGGATTCAAAATGAGAAAGAAAGATCGATCGATGCACCACATTTGGTTTTTTTTTTTGAAATCACAGTTTTTAATTATAATTGAAACTTAAGGTTTGCCACAAATAGCGAAAACTCGGCCAACAAATGTATCGATATGGCCTATG</canonical_amplicon>
		<polymorphic_amplicon>AAAACTCACTTTCGGCTTCTGGGTCGTATGGCATTTTTTCCTGCAGTTGAGCGCTGATGAAGATTTTCTGAAAATTTTTAACCKTTGGGTGGAGGAAAACGAGTTGGATTCAAAATGAGAAAGAAAGATCGATCGATGCACCACATTTGGTTTTTTTTTTTGAAATCACAGTTTTTAATTATAATTGAAACTTAAGGTTTGCCACAAATAGCGAAAACTCGGCCAACAAATGTATCGATATGGCCTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31869</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>269424</contig_pos>
        <strand></strand>
        <context>ACCKTTGGGT[G/C]GAGGAAAACG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CTGCAGTTGAGCGCTGATGAAGATTTTCTGAAAATTTTTAACCTTTGGGT</left_flank>
        <right_flank>GAGGAAAACGAGTTGGATTCAAAATGAGAAAGAAAGATCGATCGATGCAC</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGGTTCCGACCTAGTACTATGTCACCTGTCATCTTCCGACCAGAATTTGACCGTGGCCGGCTTTACAGCCGTTTTTGGGCAACTTTCGACCAGAACATGGCCAATATCCGTCAAAAATTCCTTCAAATTTCTGACCAGAAGTTACAAGCCGAGCTGTCACAATAATTTCAGATTTTTAACGACTTACATTCTCTCAAAACTTCCTCGCGCTCACGCAAGGCATGACGAGCCCTCTCCGTTTGCCTTTGTGCTTCCCGGATTTTTCTCTCCAAATCCCGAACTGAAGTTAGAAATTTTATATCATGAAACCTTTAATAGAATGGCCCCTAAACTTTAGAAAGTTGGCTTAAAGTTTAAAGTTAGAAGCCTTTCTATTAAAGGTTTTACGGTATACATGTTTTTAACAAAAAAACTCACTTTCGGCTTCTGGGTCGTATGGCATTTTTTCCTGCAGTTGAGCGCTGATGAAGATTTTCTGAAAATTTTTAACCTTTGGGTGGAGGAAAACGAGTTGGATTCAAAATGAGAAAGAAAGATCGATCGATGCACCACATTTGGTTTTTTTTTTTGAAATCACAGTTTTTAATTATAATTGAAACTTAAGGTTTGCCACAAATAGCGAAAACTCGGCCAACAAATGTATCGATATGGCCTATGGAAGAAAGTAATGAAAAATCGAAGAAAAATAAGAAAGGACTGTTTGTTAGAAGACTTTCTCCAACTATATCAAAGTTCCATGGAATTTCATGCATTTGGGTATGAGCTATAGCTTCTGAGAACATTTGAAAGTTATCGGAAATTCCGGGTGGAAGAAGTTTTGACACTTCTCGGCCACTGCCCACCAGCTGGCGGCCGTGGAGGCTCAGAGAAATAGAGACCTCTTCTTCTTCCTCTTGTTTGTTGGCTGGCAACAGAAGGCGATTAGCGTTGCGTGTGTATGTGTATGTAAGTAAGAAGAAGAAGAAGAAGAAGGAGAGGAACGATGTGTGAACGCGAAAT</canonical>
            <polymorphic>AAGGTTCCGACCTAGTACTATGTCACCTGTCATCTTCCGACCAGAATTTGACCGTGGCCGGCTTTACAGCCGTTTTTGGGCAACTTTCGACCAGAACATGGCCAATATCCGTCAAAAATTCCTTCAAATTTCTGACCAGAAGTTACAAGCCGAGCTGTCACAATAATTTCAGATTTTTAACGACTTACATTCTCTCAAAACTTCCTCGCGCTCACGCAAGGCATGACGAGCCCTCTCCGTTTGCCTTTGTGCTTCCCGGATTTTTCTCTCCAAATCCCGAACTGAAGTTAGAAATTTTATATCATGAAACCTTTAATAGAATGGCCCCTAAACTTTAGAAAGTTGGCTTAAAGTTTAAAGTTAGAAGCCTTTCTATTAAAGGTTTTACGGTATACATGTTTTTAACAAAAAAACTCACTTTCGGCTTCTGGGTCGTATGGCATTTTTTCCTGCAGTTGAGCGCTGATGAAGATTTTCTGAAAATTTTTAACCTTTGGGTSGAGGAAAACGAGTTGGATTCAAAATGAGAAAGAAAGATCGATCGATGCACCACATTTGGTTTTTTTTTTTGAAATCACAGTTTTTAATTATAATTGAAACTTAAGGTTTGCCACAAATAGCGAAAACTCGGCCAACAAATGTATCGATATGGCCTATGGAAGAAAGTAATGAAAAATCGAAGAAAAATAAGAAAGGACTGTTTGTTAGAAGACTTTCTCCAACTATATCAAAGTTCCATGGAATTTCATGCATTTGGGTATGAGCTATAGCTTCTGAGAACATTTGAAAGTTATCGGAAATTCCGGGTGGAAGAAGTTTTGACACTTCTCGGCCACTGCCCACCAGCTGGCGGCCGTGGAGGCTCAGAGAAATAGAGACCTCTTCTTCTTCCTCTTGTTTGTTGGCTGGCAACAGAAGGCGATTAGCGTTGCGTGTGTATGTGTATGTAAGTAAGAAGAAGAAGAAGAAGAAGGAGAGGAACGATGTGTGAACGCGAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>400 349 154 76 21</canonical_bands>
                <polymorphic_bands>749 154 76 21</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>196 166 104 83 77 54 49 45 37 36 31 25 25 16 15 11 10 7 6 3 2 2</canonical_bands>
                <polymorphic_bands>196 166 132 104 77 54 45 37 36 31 25 25 16 15 11 10 7 6 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACTCACTTTCGGCTTCT</pcr_primer_p1>
		<pcr_primer_p2>CATAGGCCATATCGATACATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAACTCACTTTCGGCTTCTGGGTCGTATGGCATTTTTTCCTGCAGTTGAGCGCTGATGAAGATTTTCTGAAAATTTTTAACCTTTGGGTGGAGGAAAACGAGTTGGATTCAAAATGAGAAAGAAAGATCGATCGATGCACCACATTTGGTTTTTTTTTTTGAAATCACAGTTTTTAATTATAATTGAAACTTAAGGTTTGCCACAAATAGCGAAAACTCGGCCAACAAATGTATCGATATGGCCTATG</canonical_amplicon>
		<polymorphic_amplicon>AAAACTCACTTTCGGCTTCTGGGTCGTATGGCATTTTTTCCTGCAGTTGAGCGCTGATGAAGATTTTCTGAAAATTTTTAACCTTTGGGTSGAGGAAAACGAGTTGGATTCAAAATGAGAAAGAAAGATCGATCGATGCACCACATTTGGTTTTTTTTTTTGAAATCACAGTTTTTAATTATAATTGAAACTTAAGGTTTGCCACAAATAGCGAAAACTCGGCCAACAAATGTATCGATATGGCCTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31870</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>269448</contig_pos>
        <strand></strand>
        <context>TGGATTCAAA[A/G]TGAGAAAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCTGAAAATTTTTAACCTTTGGGTGGAGGAAAACGAGTTGGATTCAAA</left_flank>
        <right_flank>TGAGAAAGAAAGATCGATCGATGCACCACATTTGGTTTTTTTTTTTGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTGTCATCTTCCGACCAGAATTTGACCGTGGCCGGCTTTACAGCCGTTTTTGGGCAACTTTCGACCAGAACATGGCCAATATCCGTCAAAAATTCCTTCAAATTTCTGACCAGAAGTTACAAGCCGAGCTGTCACAATAATTTCAGATTTTTAACGACTTACATTCTCTCAAAACTTCCTCGCGCTCACGCAAGGCATGACGAGCCCTCTCCGTTTGCCTTTGTGCTTCCCGGATTTTTCTCTCCAAATCCCGAACTGAAGTTAGAAATTTTATATCATGAAACCTTTAATAGAATGGCCCCTAAACTTTAGAAAGTTGGCTTAAAGTTTAAAGTTAGAAGCCTTTCTATTAAAGGTTTTACGGTATACATGTTTTTAACAAAAAAACTCACTTTCGGCTTCTGGGTCGTATGGCATTTTTTCCTGCAGTTGAGCGCTGATGAAGATTTTCTGAAAATTTTTAACCTTTGGGTGGAGGAAAACGAGTTGGATTCAAAATGAGAAAGAAAGATCGATCGATGCACCACATTTGGTTTTTTTTTTTGAAATCACAGTTTTTAATTATAATTGAAACTTAAGGTTTGCCACAAATAGCGAAAACTCGGCCAACAAATGTATCGATATGGCCTATGGAAGAAAGTAATGAAAAATCGAAGAAAAATAAGAAAGGACTGTTTGTTAGAAGACTTTCTCCAACTATATCAAAGTTCCATGGAATTTCATGCATTTGGGTATGAGCTATAGCTTCTGAGAACATTTGAAAGTTATCGGAAATTCCGGGTGGAAGAAGTTTTGACACTTCTCGGCCACTGCCCACCAGCTGGCGGCCGTGGAGGCTCAGAGAAATAGAGACCTCTTCTTCTTCCTCTTGTTTGTTGGCTGGCAACAGAAGGCGATTAGCGTTGCGTGTGTATGTGTATGTAAGTAAGAAGAAGAAGAAGAAGAAGGAGAGGAACGATGTGTGAACGCGAAATAACAAAAAATGCGTTTAGCCTGCA</canonical>
            <polymorphic>ACCTGTCATCTTCCGACCAGAATTTGACCGTGGCCGGCTTTACAGCCGTTTTTGGGCAACTTTCGACCAGAACATGGCCAATATCCGTCAAAAATTCCTTCAAATTTCTGACCAGAAGTTACAAGCCGAGCTGTCACAATAATTTCAGATTTTTAACGACTTACATTCTCTCAAAACTTCCTCGCGCTCACGCAAGGCATGACGAGCCCTCTCCGTTTGCCTTTGTGCTTCCCGGATTTTTCTCTCCAAATCCCGAACTGAAGTTAGAAATTTTATATCATGAAACCTTTAATAGAATGGCCCCTAAACTTTAGAAAGTTGGCTTAAAGTTTAAAGTTAGAAGCCTTTCTATTAAAGGTTTTACGGTATACATGTTTTTAACAAAAAAACTCACTTTCGGCTTCTGGGTCGTATGGCATTTTTTCCTGCAGTTGAGCGCTGATGAAGATTTTCTGAAAATTTTTAACCTTTGGGTGGAGGAAAACGAGTTGGATTCAAARTGAGAAAGAAAGATCGATCGATGCACCACATTTGGTTTTTTTTTTTGAAATCACAGTTTTTAATTATAATTGAAACTTAAGGTTTGCCACAAATAGCGAAAACTCGGCCAACAAATGTATCGATATGGCCTATGGAAGAAAGTAATGAAAAATCGAAGAAAAATAAGAAAGGACTGTTTGTTAGAAGACTTTCTCCAACTATATCAAAGTTCCATGGAATTTCATGCATTTGGGTATGAGCTATAGCTTCTGAGAACATTTGAAAGTTATCGGAAATTCCGGGTGGAAGAAGTTTTGACACTTCTCGGCCACTGCCCACCAGCTGGCGGCCGTGGAGGCTCAGAGAAATAGAGACCTCTTCTTCTTCCTCTTGTTTGTTGGCTGGCAACAGAAGGCGATTAGCGTTGCGTGTGTATGTGTATGTAAGTAAGAAGAAGAAGAAGAAGAAGGAGAGGAACGATGTGTGAACGCGAAATAACAAAAAATGCGTTTAGCCTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTCACTTTCGGCTTCT</pcr_primer_p1>
		<pcr_primer_p2>CATAGGCCATATCGATACATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAACTCACTTTCGGCTTCTGGGTCGTATGGCATTTTTTCCTGCAGTTGAGCGCTGATGAAGATTTTCTGAAAATTTTTAACCTTTGGGTGGAGGAAAACGAGTTGGATTCAAAATGAGAAAGAAAGATCGATCGATGCACCACATTTGGTTTTTTTTTTTGAAATCACAGTTTTTAATTATAATTGAAACTTAAGGTTTGCCACAAATAGCGAAAACTCGGCCAACAAATGTATCGATATGGCCTATG</canonical_amplicon>
		<polymorphic_amplicon>AAAACTCACTTTCGGCTTCTGGGTCGTATGGCATTTTTTCCTGCAGTTGAGCGCTGATGAAGATTTTCTGAAAATTTTTAACCTTTGGGTGGAGGAAAACGAGTTGGATTCAAARTGAGAAAGAAAGATCGATCGATGCACCACATTTGGTTTTTTTTTTTGAAATCACAGTTTTTAATTATAATTGAAACTTAAGGTTTGCCACAAATAGCGAAAACTCGGCCAACAAATGTATCGATATGGCCTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31871</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>269537</contig_pos>
        <strand></strand>
        <context>AAGGTTTGCC[A/G]CAAATAGCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTTTGAAATCACAGTTTTTAATTATAATTGAAACTTAAGGTTTGCC</left_flank>
        <right_flank>CAAATAGCGAAAACTCGGCCAACAAATGTATCGATATGGCCTATGGAAGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATTCCTTCAAATTTCTGACCAGAAGTTACAAGCCGAGCTGTCACAATAATTTCAGATTTTTAACGACTTACATTCTCTCAAAACTTCCTCGCGCTCACGCAAGGCATGACGAGCCCTCTCCGTTTGCCTTTGTGCTTCCCGGATTTTTCTCTCCAAATCCCGAACTGAAGTTAGAAATTTTATATCATGAAACCTTTAATAGAATGGCCCCTAAACTTTAGAAAGTTGGCTTAAAGTTTAAAGTTAGAAGCCTTTCTATTAAAGGTTTTACGGTATACATGTTTTTAACAAAAAAACTCACTTTCGGCTTCTGGGTCGTATGGCATTTTTTCCTGCAGTTGAGCGCTGATGAAGATTTTCTGAAAATTTTTAACCTTTGGGTGGAGGAAAACGAGTTGGATTCAAAATGAGAAAGAAAGATCGATCGATGCACCACATTTGGTTTTTTTTTTTGAAATCACAGTTTTTAATTATAATTGAAACTTAAGGTTTGCCACAAATAGCGAAAACTCGGCCAACAAATGTATCGATATGGCCTATGGAAGAAAGTAATGAAAAATCGAAGAAAAATAAGAAAGGACTGTTTGTTAGAAGACTTTCTCCAACTATATCAAAGTTCCATGGAATTTCATGCATTTGGGTATGAGCTATAGCTTCTGAGAACATTTGAAAGTTATCGGAAATTCCGGGTGGAAGAAGTTTTGACACTTCTCGGCCACTGCCCACCAGCTGGCGGCCGTGGAGGCTCAGAGAAATAGAGACCTCTTCTTCTTCCTCTTGTTTGTTGGCTGGCAACAGAAGGCGATTAGCGTTGCGTGTGTATGTGTATGTAAGTAAGAAGAAGAAGAAGAAGAAGGAGAGGAACGATGTGTGAACGCGAAATAACAAAAAATGCGTTTAGCCTGCAAAGATTGGGCCGTAATTTTACTTCATACTATCAAATCAAAGTGATAATTGGTGGGAATGGTAGCTTAAAGCATCAGTAAAATAGCTATT</canonical>
            <polymorphic>AAAAATTCCTTCAAATTTCTGACCAGAAGTTACAAGCCGAGCTGTCACAATAATTTCAGATTTTTAACGACTTACATTCTCTCAAAACTTCCTCGCGCTCACGCAAGGCATGACGAGCCCTCTCCGTTTGCCTTTGTGCTTCCCGGATTTTTCTCTCCAAATCCCGAACTGAAGTTAGAAATTTTATATCATGAAACCTTTAATAGAATGGCCCCTAAACTTTAGAAAGTTGGCTTAAAGTTTAAAGTTAGAAGCCTTTCTATTAAAGGTTTTACGGTATACATGTTTTTAACAAAAAAACTCACTTTCGGCTTCTGGGTCGTATGGCATTTTTTCCTGCAGTTGAGCGCTGATGAAGATTTTCTGAAAATTTTTAACCTTTGGGTGGAGGAAAACGAGTTGGATTCAAAATGAGAAAGAAAGATCGATCGATGCACCACATTTGGTTTTTTTTTTTGAAATCACAGTTTTTAATTATAATTGAAACTTAAGGTTTGCCRCAAATAGCGAAAACTCGGCCAACAAATGTATCGATATGGCCTATGGAAGAAAGTAATGAAAAATCGAAGAAAAATAAGAAAGGACTGTTTGTTAGAAGACTTTCTCCAACTATATCAAAGTTCCATGGAATTTCATGCATTTGGGTATGAGCTATAGCTTCTGAGAACATTTGAAAGTTATCGGAAATTCCGGGTGGAAGAAGTTTTGACACTTCTCGGCCACTGCCCACCAGCTGGCGGCCGTGGAGGCTCAGAGAAATAGAGACCTCTTCTTCTTCCTCTTGTTTGTTGGCTGGCAACAGAAGGCGATTAGCGTTGCGTGTGTATGTGTATGTAAGTAAGAAGAAGAAGAAGAAGAAGGAGAGGAACGATGTGTGAACGCGAAATAACAAAAAATGCGTTTAGCCTGCAAAGATTGGGCCGTAATTTTACTTCATACTATCAAATCAAAGTGATAATTGGTGGGAATGGTAGCTTAAAGCATCAGTAAAATAGCTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>196 166 83 77 77 54 49 47 45 37 36 36 25 16 15 11 10 7 6 3 2 2</canonical_bands>
                <polymorphic_bands>232 166 83 77 77 54 49 47 45 37 36 25 16 15 11 10 7 6 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGAAAACGAGTTGGATTC</pcr_primer_p1>
		<pcr_primer_p2>TGGAACTTTGATATAGTTGGAGA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>GAGGAAAACGAGTTGGATTCAAAATGAGAAAGAAAGATCGATCGATGCACCACATTTGGTTTTTTTTTTTGAAATCACAGTTTTTAATTATAATTGAAACTTAAGGTTTGCCACAAATAGCGAAAACTCGGCCAACAAATGTATCGATATGGCCTATGGAAGAAAGTAATGAAAAATCGAAGAAAAATAAGAAAGGACTGTTTGTTAGAAGACTTTCTCCAACTATATCAAAGTTCCA</canonical_amplicon>
		<polymorphic_amplicon>GAGGAAAACGAGTTGGATTCAAAATGAGAAAGAAAGATCGATCGATGCACCACATTTGGTTTTTTTTTTTGAAATCACAGTTTTTAATTATAATTGAAACTTAAGGTTTGCCRCAAATAGCGAAAACTCGGCCAACAAATGTATCGATATGGCCTATGGAAGAAAGTAATGAAAAATCGAAGAAAAATAAGAAAGGACTGTTTGTTAGAAGACTTTCTCCAACTATATCAAAGTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31872</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>291504</contig_pos>
        <strand>+</strand>
        <context>GGGTCAGATT[G/T]ACATAAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATCATGCATAGTAAAAAGTAAGGTTTAGAATTAAAAAGGGGGTCAGATT</left_flank>
        <right_flank>ACATAAAAAAAGGTTAGTTCTAAAAGACTGAGAAGAAATAATGTCGGGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAATTTATCAGTTGACAACCGATTTATACCTTTGACAAGAGCCGAGATAAATTGGCTTAAAGTTTCCATATGTGTTGAGGCGGAGCCAATTTTCTCTTTCTCGTGTTTGTTTCTTTGGTCAACCCTTATCACGCTCCCTTTGACCCCTCTTTTCACTATTACCGCCATACCCTCTTCCTATCCCTCGAACATGTCTCTCACTTGGCACCGCGCCAGAATATTCATGAATCGTTTTTTTTCGAACACAGCAGTGTTTCTCCTCTTCTCTCCCCTTGTCTCTCTAAAGTTCGCAAATTTTCGTCTCGCTCTCTAACCACTCTCTCGAATTTTCGTAGTGCTTCTTTTCCAGTTCATCCGTAAACACTGCTTCTTAATAAAAACTTAATAAAACATTTATTGATAAAGGGCCGAAGCCACTGATATTATCAATGCACAGTAAAATGTAATCATCATGCATAGTAAAAAGTAAGGTTTAGAATTAAAAAGGGGGTCAGATTTACATAAAAAAAGGTTAGTTCTAAAAGACTGAGAAGAAATAATGTCGGGGAAGGCTGATTGGGGGAGGGAGTTCCAGCAAGATATAATTCTTGAGGTAAAAAATTGGGAAGAAAATTTACTGGGGGAAGTTTTTAATTTGTAACGGATATTGAAAGGGTGCCTACGGAGATTAGTAATCGTGGAGGGACAAATAAATAAATCACGATTCCAAGTTACTTCGCGGGATACTAATAGTTTATGCAGGAAAACTAAATCGGCAATGAGCCTGCGACATTCTAGAGATTCTAAATTGCAATCATTTAAACAATCAAAGTAAGAGATGTAGGGCTCAACGCGAACGTATGGAGAAGGTTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTTTTTCCAGAAAAATGCCATACAACTATGACGATTTGGAGATGCCGGAGGATTTAGAAGATATTGAAATCCTCCCCATGGGGGACCATGGAGGGCACGAAC</canonical>
            <polymorphic>AACAATTTATCAGTTGACAACCGATTTATACCTTTGACAAGAGCCGAGATAAATTGGCTTAAAGTTTCCATATGTGTTGAGGCGGAGCCAATTTTCTCTTTCTCGTGTTTGTTTCTTTGGTCAACCCTTATCACGCTCCCTTTGACCCCTCTTTTCACTATTACCGCCATACCCTCTTCCTATCCCTCGAACATGTCTCTCACTTGGCACCGCGCCAGAATATTCATGAATCGTTTTTTTTCGAACACAGCAGTGTTTCTCCTCTTCTCTCCCCTTGTCTCTCTAAAGTTCGCAAATTTTCGTCTCGCTCTCTAACCACTCTCTCGAATTTTCGTAGTGCTTCTTTTCCAGTTCATCCGTAAACACTGCTTCTTAATAAAAACTTAATAAAACATTTATTGATAAAGGGCCGAAGCCACTGATATTATCAATGCACAGTAAAATGTAATCATCATGCATAGTAAAAAGTAAGGTTTAGAATTAAAAAGGGGGTCAGATTKACATAAAAAAAGGTTAGTTCTAAAAGACTGAGAAGAAATAATGTCGGGGAAGGCTGATTGGGGGAGGGAGTTCCAGCAAGATATAATTCTTGAGGTAAAAAATTGGGAAGAAAATTTACTGGGGGAAGTTTTTAATTTGTAACGGATATTGAAAGGGTGCCTACGGAGATTAGTAATCGTGGAGGGACAAATAAATAAATCACGATTCCAAGTTACTTCGCGGGATACTAATAGTTTATGCAGGAAAACTAAATCGGCAATGAGCCTGCGACATTCTAGAGATTCTAAATTGCAATCATTTAAACAATCAAAGTAAGAGATGTAGGGCTCAACGCGAACGTATGGAGAAGGTTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTTTTTCCAGAAAAATGCCATACAACTATGACGATTTGGAGATGCCGGAGGATTTAGAAGATATTGAAATCCTCCCCATGGGGGACCATGGAGGGCACGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTCCAGTTCATCCGTAA</pcr_primer_p1>
		<pcr_primer_p2>AAGAATTATATCTTGCTGGAACTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTTTCCAGTTCATCCGTAAACACTGCTTCTTAATAAAAACTTAATAAAACATTTATTGATAAAGGGCCGAAGCCACTGATATTATCAATGCACAGTAAAATGTAATCATCATGCATAGTAAAAAGTAAGGTTTAGAATTAAAAAGGGGGTCAGATTTACATAAAAAAAGGTTAGTTCTAAAAGACTGAGAAGAAATAATGTCGGGGAAGGCTGATTGGGGGAGGGAGTTCCAGCAAGATATAATTCTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTCCAGTTCATCCGTAAACACTGCTTCTTAATAAAAACTTAATAAAACATTTATTGATAAAGGGCCGAAGCCACTGATATTATCAATGCACAGTAAAATGTAATCATCATGCATAGTAAAAAGTAAGGTTTAGAATTAAAAAGGGGGTCAGATTKACATAAAAAAAGGTTAGTTCTAAAAGACTGAGAAGAAATAATGTCGGGGAAGGCTGATTGGGGGAGGGAGTTCCAGCAAGATATAATTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31873</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>291648</contig_pos>
        <strand>+</strand>
        <context>AATTTGTAAC[G/T]GATATTGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGTAAAAAATTGGGAAGAAAATTTACTGGGGGAAGTTTTTAATTTGTAAC</left_flank>
        <right_flank>GATATTGAAAGGGTGCCTACGGAGATTAGTAATCGTGGAGGGACAAATAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCCCTCTTTTCACTATTACCGCCATACCCTCTTCCTATCCCTCGAACATGTCTCTCACTTGGCACCGCGCCAGAATATTCATGAATCGTTTTTTTTCGAACACAGCAGTGTTTCTCCTCTTCTCTCCCCTTGTCTCTCTAAAGTTCGCAAATTTTCGTCTCGCTCTCTAACCACTCTCTCGAATTTTCGTAGTGCTTCTTTTCCAGTTCATCCGTAAACACTGCTTCTTAATAAAAACTTAATAAAACATTTATTGATAAAGGGCCGAAGCCACTGATATTATCAATGCACAGTAAAATGTAATCATCATGCATAGTAAAAAGTAAGGTTTAGAATTAAAAAGGGGGTCAGATTTACATAAAAAAAGGTTAGTTCTAAAAGACTGAGAAGAAATAATGTCGGGGAAGGCTGATTGGGGGAGGGAGTTCCAGCAAGATATAATTCTTGAGGTAAAAAATTGGGAAGAAAATTTACTGGGGGAAGTTTTTAATTTGTAACGGATATTGAAAGGGTGCCTACGGAGATTAGTAATCGTGGAGGGACAAATAAATAAATCACGATTCCAAGTTACTTCGCGGGATACTAATAGTTTATGCAGGAAAACTAAATCGGCAATGAGCCTGCGACATTCTAGAGATTCTAAATTGCAATCATTTAAACAATCAAAGTAAGAGATGTAGGGCTCAACGCGAACGTATGGAGAAGGTTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTTTTTCCAGAAAAATGCCATACAACTATGACGATTTGGAGATGCCGGAGGATTTAGAAGATATTGAAATCCTCCCCATGGGGGACCATGGAGGGCACGAACAGTTCCAGCAGCATCCAGATCACCAAATCGAAGAATCAGGTCCGTTGGTTTTGGAGCCCGGCCAATCACACGCTCCTTCGTCCCAACATCAAGCTTATCCTATTGAGGAATCGGGTCCAATGATCCCAGAAGGATTTCGTCAGA</canonical>
            <polymorphic>ACCCCTCTTTTCACTATTACCGCCATACCCTCTTCCTATCCCTCGAACATGTCTCTCACTTGGCACCGCGCCAGAATATTCATGAATCGTTTTTTTTCGAACACAGCAGTGTTTCTCCTCTTCTCTCCCCTTGTCTCTCTAAAGTTCGCAAATTTTCGTCTCGCTCTCTAACCACTCTCTCGAATTTTCGTAGTGCTTCTTTTCCAGTTCATCCGTAAACACTGCTTCTTAATAAAAACTTAATAAAACATTTATTGATAAAGGGCCGAAGCCACTGATATTATCAATGCACAGTAAAATGTAATCATCATGCATAGTAAAAAGTAAGGTTTAGAATTAAAAAGGGGGTCAGATTTACATAAAAAAAGGTTAGTTCTAAAAGACTGAGAAGAAATAATGTCGGGGAAGGCTGATTGGGGGAGGGAGTTCCAGCAAGATATAATTCTTGAGGTAAAAAATTGGGAAGAAAATTTACTGGGGGAAGTTTTTAATTTGTAACKGATATTGAAAGGGTGCCTACGGAGATTAGTAATCGTGGAGGGACAAATAAATAAATCACGATTCCAAGTTACTTCGCGGGATACTAATAGTTTATGCAGGAAAACTAAATCGGCAATGAGCCTGCGACATTCTAGAGATTCTAAATTGCAATCATTTAAACAATCAAAGTAAGAGATGTAGGGCTCAACGCGAACGTATGGAGAAGGTTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTTTTTCCAGAAAAATGCCATACAACTATGACGATTTGGAGATGCCGGAGGATTTAGAAGATATTGAAATCCTCCCCATGGGGGACCATGGAGGGCACGAACAGTTCCAGCAGCATCCAGATCACCAAATCGAAGAATCAGGTCCGTTGGTTTTGGAGCCCGGCCAATCACACGCTCCTTCGTCCCAACATCAAGCTTATCCTATTGAGGAATCGGGTCCAATGATCCCAGAAGGATTTCGTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATGCATAGTAAAAAGTAAGGTT</pcr_primer_p1>
		<pcr_primer_p2>GATTTATTTATTTGTCCCTCCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCATGCATAGTAAAAAGTAAGGTTTAGAATTAAAAAGGGGGTCAGATTTACATAAAAAAAGGTTAGTTCTAAAAGACTGAGAAGAAATAATGTCGGGGAAGGCTGATTGGGGGAGGGAGTTCCAGCAAGATATAATTCTTGAGGTAAAAAATTGGGAAGAAAATTTACTGGGGGAAGTTTTTAATTTGTAACGGATATTGAAAGGGTGCCTACGGAGATTAGTAATCGTGGAGGGACAAATAAATAAATC</canonical_amplicon>
		<polymorphic_amplicon>TCATGCATAGTAAAAAGTAAGGTTTAGAATTAAAAAGGGGGTCAGATTTACATAAAAAAAGGTTAGTTCTAAAAGACTGAGAAGAAATAATGTCGGGGAAGGCTGATTGGGGGAGGGAGTTCCAGCAAGATATAATTCTTGAGGTAAAAAATTGGGAAGAAAATTTACTGGGGGAAGTTTTTAATTTGTAACKGATATTGAAAGGGTGCCTACGGAGATTAGTAATCGTGGAGGGACAAATAAATAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31874</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>291776</contig_pos>
        <strand>+</strand>
        <context>GAGCCTGCGA[C/T]ATTCTAGAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGATACTAATAGTTTATGCAGGAAAACTAAATCGGCAATGAGCCTGCGA</left_flank>
        <right_flank>ATTCTAGAGATTCTAAATTGCAATCATTTAAACAATCAAAGTAAGAGATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTGTCTCTCTAAAGTTCGCAAATTTTCGTCTCGCTCTCTAACCACTCTCTCGAATTTTCGTAGTGCTTCTTTTCCAGTTCATCCGTAAACACTGCTTCTTAATAAAAACTTAATAAAACATTTATTGATAAAGGGCCGAAGCCACTGATATTATCAATGCACAGTAAAATGTAATCATCATGCATAGTAAAAAGTAAGGTTTAGAATTAAAAAGGGGGTCAGATTTACATAAAAAAAGGTTAGTTCTAAAAGACTGAGAAGAAATAATGTCGGGGAAGGCTGATTGGGGGAGGGAGTTCCAGCAAGATATAATTCTTGAGGTAAAAAATTGGGAAGAAAATTTACTGGGGGAAGTTTTTAATTTGTAACGGATATTGAAAGGGTGCCTACGGAGATTAGTAATCGTGGAGGGACAAATAAATAAATCACGATTCCAAGTTACTTCGCGGGATACTAATAGTTTATGCAGGAAAACTAAATCGGCAATGAGCCTGCGACATTCTAGAGATTCTAAATTGCAATCATTTAAACAATCAAAGTAAGAGATGTAGGGCTCAACGCGAACGTATGGAGAAGGTTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTTTTTCCAGAAAAATGCCATACAACTATGACGATTTGGAGATGCCGGAGGATTTAGAAGATATTGAAATCCTCCCCATGGGGGACCATGGAGGGCACGAACAGTTCCAGCAGCATCCAGATCACCAAATCGAAGAATCAGGTCCGTTGGTTTTGGAGCCCGGCCAATCACACGCTCCTTCGTCCCAACATCAAGCTTATCCTATTGAGGAATCGGGTCCAATGATCCCAGAAGGATTTCGTCAGATCCAGCCAATGCCTCAAAACCATGTTCCATCCGTCCAACCATCTGGACCACTTGTTCCTCATCCGGCCATGGATCAACCCCAGTTTCCGATCCAGCACTATCATCAGCTACATCATCATCACCATCAG</canonical>
            <polymorphic>CCTTGTCTCTCTAAAGTTCGCAAATTTTCGTCTCGCTCTCTAACCACTCTCTCGAATTTTCGTAGTGCTTCTTTTCCAGTTCATCCGTAAACACTGCTTCTTAATAAAAACTTAATAAAACATTTATTGATAAAGGGCCGAAGCCACTGATATTATCAATGCACAGTAAAATGTAATCATCATGCATAGTAAAAAGTAAGGTTTAGAATTAAAAAGGGGGTCAGATTTACATAAAAAAAGGTTAGTTCTAAAAGACTGAGAAGAAATAATGTCGGGGAAGGCTGATTGGGGGAGGGAGTTCCAGCAAGATATAATTCTTGAGGTAAAAAATTGGGAAGAAAATTTACTGGGGGAAGTTTTTAATTTGTAACGGATATTGAAAGGGTGCCTACGGAGATTAGTAATCGTGGAGGGACAAATAAATAAATCACGATTCCAAGTTACTTCGCGGGATACTAATAGTTTATGCAGGAAAACTAAATCGGCAATGAGCCTGCGAYATTCTAGAGATTCTAAATTGCAATCATTTAAACAATCAAAGTAAGAGATGTAGGGCTCAACGCGAACGTATGGAGAAGGTTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTTTTTCCAGAAAAATGCCATACAACTATGACGATTTGGAGATGCCGGAGGATTTAGAAGATATTGAAATCCTCCCCATGGGGGACCATGGAGGGCACGAACAGTTCCAGCAGCATCCAGATCACCAAATCGAAGAATCAGGTCCGTTGGTTTTGGAGCCCGGCCAATCACACGCTCCTTCGTCCCAACATCAAGCTTATCCTATTGAGGAATCGGGTCCAATGATCCCAGAAGGATTTCGTCAGATCCAGCCAATGCCTCAAAACCATGTTCCATCCGTCCAACCATCTGGACCACTTGTTCCTCATCCGGCCATGGATCAACCCCAGTTTCCGATCCAGCACTATCATCAGCTACATCATCATCACCATCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGGGACAAATAAATAAATCAC</pcr_primer_p1>
		<pcr_primer_p2>GTCATAGTTGTATGGCATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAGGGACAAATAAATAAATCACGATTCCAAGTTACTTCGCGGGATACTAATAGTTTATGCAGGAAAACTAAATCGGCAATGAGCCTGCGACATTCTAGAGATTCTAAATTGCAATCATTTAAACAATCAAAGTAAGAGATGTAGGGCTCAACGCGAACGTATGGAGAAGGTTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTTTTTCCAGAAAAATGCCATACAACTATGAC</canonical_amplicon>
		<polymorphic_amplicon>GGAGGGACAAATAAATAAATCACGATTCCAAGTTACTTCGCGGGATACTAATAGTTTATGCAGGAAAACTAAATCGGCAATGAGCCTGCGAYATTCTAGAGATTCTAAATTGCAATCATTTAAACAATCAAAGTAAGAGATGTAGGGCTCAACGCGAACGTATGGAGAAGGTTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTTTTTCCAGAAAAATGCCATACAACTATGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31875</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>291852</contig_pos>
        <strand>+</strand>
        <context>ACGTATGGAG[A/C]AGGTTTTtct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTAAACAATCAAAGTAAGAGATGTAGGGCTCAACGCGAACGTATGGAG</left_flank>
        <right_flank>AGGTTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTTCATCCGTAAACACTGCTTCTTAATAAAAACTTAATAAAACATTTATTGATAAAGGGCCGAAGCCACTGATATTATCAATGCACAGTAAAATGTAATCATCATGCATAGTAAAAAGTAAGGTTTAGAATTAAAAAGGGGGTCAGATTTACATAAAAAAAGGTTAGTTCTAAAAGACTGAGAAGAAATAATGTCGGGGAAGGCTGATTGGGGGAGGGAGTTCCAGCAAGATATAATTCTTGAGGTAAAAAATTGGGAAGAAAATTTACTGGGGGAAGTTTTTAATTTGTAACGGATATTGAAAGGGTGCCTACGGAGATTAGTAATCGTGGAGGGACAAATAAATAAATCACGATTCCAAGTTACTTCGCGGGATACTAATAGTTTATGCAGGAAAACTAAATCGGCAATGAGCCTGCGACATTCTAGAGATTCTAAATTGCAATCATTTAAACAATCAAAGTAAGAGATGTAGGGCTCAACGCGAACGTATGGAGAAGGTTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTTTTTCCAGAAAAATGCCATACAACTATGACGATTTGGAGATGCCGGAGGATTTAGAAGATATTGAAATCCTCCCCATGGGGGACCATGGAGGGCACGAACAGTTCCAGCAGCATCCAGATCACCAAATCGAAGAATCAGGTCCGTTGGTTTTGGAGCCCGGCCAATCACACGCTCCTTCGTCCCAACATCAAGCTTATCCTATTGAGGAATCGGGTCCAATGATCCCAGAAGGATTTCGTCAGATCCAGCCAATGCCTCAAAACCATGTTCCATCCGTCCAACCATCTGGACCACTTGTTCCTCATCCGGCCATGGATCAACCCCAGTTTCCGATCCAGCACTATCATCAGCTACATCATCATCACCATCAGAACCCTCCAATGCTGCCAAGGGAAATGCCAGGACCATCACAGAATGCTCAGAATTTCCCGCCCTATCCGTTCCATT</canonical>
            <polymorphic>CAGTTCATCCGTAAACACTGCTTCTTAATAAAAACTTAATAAAACATTTATTGATAAAGGGCCGAAGCCACTGATATTATCAATGCACAGTAAAATGTAATCATCATGCATAGTAAAAAGTAAGGTTTAGAATTAAAAAGGGGGTCAGATTTACATAAAAAAAGGTTAGTTCTAAAAGACTGAGAAGAAATAATGTCGGGGAAGGCTGATTGGGGGAGGGAGTTCCAGCAAGATATAATTCTTGAGGTAAAAAATTGGGAAGAAAATTTACTGGGGGAAGTTTTTAATTTGTAACGGATATTGAAAGGGTGCCTACGGAGATTAGTAATCGTGGAGGGACAAATAAATAAATCACGATTCCAAGTTACTTCGCGGGATACTAATAGTTTATGCAGGAAAACTAAATCGGCAATGAGCCTGCGACATTCTAGAGATTCTAAATTGCAATCATTTAAACAATCAAAGTAAGAGATGTAGGGCTCAACGCGAACGTATGGAGMAGGTTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTTTTTCCAGAAAAATGCCATACAACTATGACGATTTGGAGATGCCGGAGGATTTAGAAGATATTGAAATCCTCCCCATGGGGGACCATGGAGGGCACGAACAGTTCCAGCAGCATCCAGATCACCAAATCGAAGAATCAGGTCCGTTGGTTTTGGAGCCCGGCCAATCACACGCTCCTTCGTCCCAACATCAAGCTTATCCTATTGAGGAATCGGGTCCAATGATCCCAGAAGGATTTCGTCAGATCCAGCCAATGCCTCAAAACCATGTTCCATCCGTCCAACCATCTGGACCACTTGTTCCTCATCCGGCCATGGATCAACCCCAGTTTCCGATCCAGCACTATCATCAGCTACATCATCATCACCATCAGAACCCTCCAATGCTGCCAAGGGAAATGCCAGGACCATCACAGAATGCTCAGAATTTCCCGCCCTATCCGTTCCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGGGACAAATAAATAAATCAC</pcr_primer_p1>
		<pcr_primer_p2>GTCATAGTTGTATGGCATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAGGGACAAATAAATAAATCACGATTCCAAGTTACTTCGCGGGATACTAATAGTTTATGCAGGAAAACTAAATCGGCAATGAGCCTGCGACATTCTAGAGATTCTAAATTGCAATCATTTAAACAATCAAAGTAAGAGATGTAGGGCTCAACGCGAACGTATGGAGAAGGTTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTTTTTCCAGAAAAATGCCATACAACTATGAC</canonical_amplicon>
		<polymorphic_amplicon>GGAGGGACAAATAAATAAATCACGATTCCAAGTTACTTCGCGGGATACTAATAGTTTATGCAGGAAAACTAAATCGGCAATGAGCCTGCGACATTCTAGAGATTCTAAATTGCAATCATTTAAACAATCAAAGTAAGAGATGTAGGGCTCAACGCGAACGTATGGAGMAGGTTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTTTTTCCAGAAAAATGCCATACAACTATGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31876</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>291891</contig_pos>
        <strand></strand>
        <context>ctctctctct[T/C]tctctctctc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AACGTATGGAGAAGGTTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT</left_flank>
        <right_flank>TCTCTCTCTCTCTTTTTCCAGAAAAATGCCATACAACTATGACGATTTGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAACATTTATTGATAAAGGGCCGAAGCCACTGATATTATCAATGCACAGTAAAATGTAATCATCATGCATAGTAAAAAGTAAGGTTTAGAATTAAAAAGGGGGTCAGATTTACATAAAAAAAGGTTAGTTCTAAAAGACTGAGAAGAAATAATGTCGGGGAAGGCTGATTGGGGGAGGGAGTTCCAGCAAGATATAATTCTTGAGGTAAAAAATTGGGAAGAAAATTTACTGGGGGAAGTTTTTAATTTGTAACGGATATTGAAAGGGTGCCTACGGAGATTAGTAATCGTGGAGGGACAAATAAATAAATCACGATTCCAAGTTACTTCGCGGGATACTAATAGTTTATGCAGGAAAACTAAATCGGCAATGAGCCTGCGACATTCTAGAGATTCTAAATTGCAATCATTTAAACAATCAAAGTAAGAGATGTAGGGCTCAACGCGAACGTATGGAGAAGGTTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTTTTTCCAGAAAAATGCCATACAACTATGACGATTTGGAGATGCCGGAGGATTTAGAAGATATTGAAATCCTCCCCATGGGGGACCATGGAGGGCACGAACAGTTCCAGCAGCATCCAGATCACCAAATCGAAGAATCAGGTCCGTTGGTTTTGGAGCCCGGCCAATCACACGCTCCTTCGTCCCAACATCAAGCTTATCCTATTGAGGAATCGGGTCCAATGATCCCAGAAGGATTTCGTCAGATCCAGCCAATGCCTCAAAACCATGTTCCATCCGTCCAACCATCTGGACCACTTGTTCCTCATCCGGCCATGGATCAACCCCAGTTTCCGATCCAGCACTATCATCAGCTACATCATCATCACCATCAGAACCCTCCAATGCTGCCAAGGGAAATGCCAGGACCATCACAGAATGCTCAGAATTTCCCGCCCTATCCGTTCCATTCATTCCAACCATTCCACCATCATCATGATTTTGCTTATG</canonical>
            <polymorphic>TAAAACATTTATTGATAAAGGGCCGAAGCCACTGATATTATCAATGCACAGTAAAATGTAATCATCATGCATAGTAAAAAGTAAGGTTTAGAATTAAAAAGGGGGTCAGATTTACATAAAAAAAGGTTAGTTCTAAAAGACTGAGAAGAAATAATGTCGGGGAAGGCTGATTGGGGGAGGGAGTTCCAGCAAGATATAATTCTTGAGGTAAAAAATTGGGAAGAAAATTTACTGGGGGAAGTTTTTAATTTGTAACGGATATTGAAAGGGTGCCTACGGAGATTAGTAATCGTGGAGGGACAAATAAATAAATCACGATTCCAAGTTACTTCGCGGGATACTAATAGTTTATGCAGGAAAACTAAATCGGCAATGAGCCTGCGACATTCTAGAGATTCTAAATTGCAATCATTTAAACAATCAAAGTAAGAGATGTAGGGCTCAACGCGAACGTATGGAGAAGGTTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTYTCTCTCTCTCTCTTTTTCCAGAAAAATGCCATACAACTATGACGATTTGGAGATGCCGGAGGATTTAGAAGATATTGAAATCCTCCCCATGGGGGACCATGGAGGGCACGAACAGTTCCAGCAGCATCCAGATCACCAAATCGAAGAATCAGGTCCGTTGGTTTTGGAGCCCGGCCAATCACACGCTCCTTCGTCCCAACATCAAGCTTATCCTATTGAGGAATCGGGTCCAATGATCCCAGAAGGATTTCGTCAGATCCAGCCAATGCCTCAAAACCATGTTCCATCCGTCCAACCATCTGGACCACTTGTTCCTCATCCGGCCATGGATCAACCCCAGTTTCCGATCCAGCACTATCATCAGCTACATCATCATCACCATCAGAACCCTCCAATGCTGCCAAGGGAAATGCCAGGACCATCACAGAATGCTCAGAATTTCCCGCCCTATCCGTTCCATTCATTCCAACCATTCCACCATCATCATGATTTTGCTTATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATAAATCACGATTCCAAGTTA</pcr_primer_p1>
		<pcr_primer_p2>ATCTCCAAATCGTCATAGTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATAAATCACGATTCCAAGTTACTTCGCGGGATACTAATAGTTTATGCAGGAAAACTAAATCGGCAATGAGCCTGCGACATTCTAGAGATTCTAAATTGCAATCATTTAAACAATCAAAGTAAGAGATGTAGGGCTCAACGCGAACGTATGGAGAAGGTTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTTTTTCCAGAAAAATGCCATACAACTATGACGATTTGGAGAT</canonical_amplicon>
		<polymorphic_amplicon>AAATAAATCACGATTCCAAGTTACTTCGCGGGATACTAATAGTTTATGCAGGAAAACTAAATCGGCAATGAGCCTGCGACATTCTAGAGATTCTAAATTGCAATCATTTAAACAATCAAAGTAAGAGATGTAGGGCTCAACGCGAACGTATGGAGAAGGTTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTYTCTCTCTCTCTCTTTTTCCAGAAAAATGCCATACAACTATGACGATTTGGAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31877</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>293017</contig_pos>
        <strand>+</strand>
        <context>CGCCTATATT[C/T]ATAGGAGTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCGCCACATCAAGCAGGAAAAGAGAAAGGTTAGCGGCGCCGCCTATATT</left_flank>
        <right_flank>ATAGGAGTTCCATGAGAGGAGCTTATCCTCACGTTTTATGGAAGGATCTT</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGAATTCGACCGAAGGGACAAGGAAAAAGATCAGAAATTTAAAAAGAAACTGGATGGTAAGAAATATAGTAGAATGGCTGTCGCATAGATTTTGTTATTGCAGAGAAGGACAATCAGATTCGCGAGAGGGATAGTAGAATTGACCAACTGGAGAGACAACTGGCTCAACGAGGCACCAGTGCTCACACCTCATTCCCCAGTCCTGAAACGCCTCGGGATCTGCATGATATGCCAGACACGTCGTCTGCTCAACCGCTCCATTACGACTCCGAGGATGAAATTCCAGAGCAAGGTTTCCTGTATCAAAGAGAAGCCGAGTGGTTCCTTCAACGGACTTTTGGAGGAAGACCGTGGAGACTGAAGATTCAAGGTATGCTCTTGTTTTCTTATTTCTTCCAATTAAACCATTTTCCAGATGACACTGCCTACCTCTTCAATCCCATCTTCTTCCGCCACATCAAGCAGGAAAAGAGAAAGGTTAGCGGCGCCGCCTATATTTATAGGAGTTCCATGAGAGGAGCTTATCCTCACGTTTTATGGAAGGATCTTCAAGAAGATGAGAAGAATGTATGGAATGAGGTGCACAGATATTTGAGCGTCAGGCAACAGAGGGAGATCGAGAAAGGACTCATCAAGATCAAAGAGATGCCCACAAGGATAAAAGCCGAGCCAAGAGACGAAGGATATGAGCGAGCAGCGAATGGAACGGGGCAACATTGGCAGGCCCAACAAGTTCCAATTCCACAACATCAAGGATATACACCAGGACCACCATATCCGGGGTATCCTCATCCAGGAATGCCGATGCCGACAATGCCACCACCACACCCTATGTGGCACCAACCACAACCGGAGAACCAATTAAATACGGGACCACAAAATGGTTGGATTGGAGGACCGATGATGCATTTCCAAATGCCACAAGAAGCAATGCATGGTCAGATGCCAATGGAAATGCAGCACAGGATGCCGGCAGAGCCAATGCAGGCCGCACCAGTT</canonical>
            <polymorphic>AGGAATTCGACCGAAGGGACAAGGAAAAAGATCAGAAATTTAAAAAGAAACTGGATGGTAAGAAATATAGTAGAATGGCTGTCGCATAGATTTTGTTATTGCAGAGAAGGACAATCAGATTCGCGAGAGGGATAGTAGAATTGACCAACTGGAGAGACAACTGGCTCAACGAGGCACCAGTGCTCACACCTCATTCCCCAGTCCTGAAACGCCTCGGGATCTGCATGATATGCCAGACACGTCGTCTGCTCAACCGCTCCATTACGACTCCGAGGATGAAATTCCAGAGCAAGGTTTCCTGTATCAAAGAGAAGCCGAGTGGTTCCTTCAACGGACTTTTGGAGGAAGACCGTGGAGACTGAAGATTCAAGGTATGCTCTTGTTTTCTTATTTCTTCCAATTAAACCATTTTCCAGATGACACTGCCTACCTCTTCAATCCCATCTTCTTCCGCCACATCAAGCAGGAAAAGAGAAAGGTTAGCGGCGCCGCCTATATTYATAGGAGTTCCATGAGAGGAGCTTATCCTCACGTTTTATGGAAGGATCTTCAAGAAGATGAGAAGAATGTATGGAATGAGGTGCACAGATATTTGAGCGTCAGGCAACAGAGGGAGATCGAGAAAGGACTCATCAAGATCAAAGAGATGCCCACAAGGATAAAAGCCGAGCCAAGAGACGAAGGATATGAGCGAGCAGCGAATGGAACGGGGCAACATTGGCAGGCCCAACAAGTTCCAATTCCACAACATCAAGGATATACACCAGGACCACCATATCCGGGGTATCCTCATCCAGGAATGCCGATGCCGACAATGCCACCACCACACCCTATGTGGCACCAACCACAACCGGAGAACCAATTAAATACGGGACCACAAAATGGTTGGATTGGAGGACCGATGATGCATTTCCAAATGCCACAAGAAGCAATGCATGGTCAGATGCCAATGGAAATGCAGCACAGGATGCCGGCAGAGCCAATGCAGGCCGCACCAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTAAACCATTTTCCAGATGA</pcr_primer_p1>
		<pcr_primer_p2>CTCTTTGATCTTGATGAGTCCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATTAAACCATTTTCCAGATGACACTGCCTACCTCTTCAATCCCATCTTCTTCCGCCACATCAAGCAGGAAAAGAGAAAGGTTAGCGGCGCCGCCTATATTTATAGGAGTTCCATGAGAGGAGCTTATCCTCACGTTTTATGGAAGGATCTTCAAGAAGATGAGAAGAATGTATGGAATGAGGTGCACAGATATTTGAGCGTCAGGCAACAGAGGGAGATCGAGAAAGGACTCATCAAGATCAAAGAG</canonical_amplicon>
		<polymorphic_amplicon>AATTAAACCATTTTCCAGATGACACTGCCTACCTCTTCAATCCCATCTTCTTCCGCCACATCAAGCAGGAAAAGAGAAAGGTTAGCGGCGCCGCCTATATTYATAGGAGTTCCATGAGAGGAGCTTATCCTCACGTTTTATGGAAGGATCTTCAAGAAGATGAGAAGAATGTATGGAATGAGGTGCACAGATATTTGAGCGTCAGGCAACAGAGGGAGATCGAGAAAGGACTCATCAAGATCAAAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31878</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>293070</contig_pos>
        <strand>+</strand>
        <context>AGGATCTTCA[A/G]GAAGATGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGAGTTCCATGAGAGGAGCTTATCCTCACGTTTTATGGAAGGATCTTCA</left_flank>
        <right_flank>GAAGATGAGAAGAATGTATGGAATGAGGTGCACAGATATTTGAGCGTCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGGTAAGAAATATAGTAGAATGGCTGTCGCATAGATTTTGTTATTGCAGAGAAGGACAATCAGATTCGCGAGAGGGATAGTAGAATTGACCAACTGGAGAGACAACTGGCTCAACGAGGCACCAGTGCTCACACCTCATTCCCCAGTCCTGAAACGCCTCGGGATCTGCATGATATGCCAGACACGTCGTCTGCTCAACCGCTCCATTACGACTCCGAGGATGAAATTCCAGAGCAAGGTTTCCTGTATCAAAGAGAAGCCGAGTGGTTCCTTCAACGGACTTTTGGAGGAAGACCGTGGAGACTGAAGATTCAAGGTATGCTCTTGTTTTCTTATTTCTTCCAATTAAACCATTTTCCAGATGACACTGCCTACCTCTTCAATCCCATCTTCTTCCGCCACATCAAGCAGGAAAAGAGAAAGGTTAGCGGCGCCGCCTATATTTATAGGAGTTCCATGAGAGGAGCTTATCCTCACGTTTTATGGAAGGATCTTCAAGAAGATGAGAAGAATGTATGGAATGAGGTGCACAGATATTTGAGCGTCAGGCAACAGAGGGAGATCGAGAAAGGACTCATCAAGATCAAAGAGATGCCCACAAGGATAAAAGCCGAGCCAAGAGACGAAGGATATGAGCGAGCAGCGAATGGAACGGGGCAACATTGGCAGGCCCAACAAGTTCCAATTCCACAACATCAAGGATATACACCAGGACCACCATATCCGGGGTATCCTCATCCAGGAATGCCGATGCCGACAATGCCACCACCACACCCTATGTGGCACCAACCACAACCGGAGAACCAATTAAATACGGGACCACAAAATGGTTGGATTGGAGGACCGATGATGCATTTCCAAATGCCACAAGAAGCAATGCATGGTCAGATGCCAATGGAAATGCAGCACAGGATGCCGGCAGAGCCAATGCAGGCCGCACCAGTTCCAAGGAAACATGTGCAGATCAAGGAAGAGATCATTGATGAAGATGATTGAGG</canonical>
            <polymorphic>GATGGTAAGAAATATAGTAGAATGGCTGTCGCATAGATTTTGTTATTGCAGAGAAGGACAATCAGATTCGCGAGAGGGATAGTAGAATTGACCAACTGGAGAGACAACTGGCTCAACGAGGCACCAGTGCTCACACCTCATTCCCCAGTCCTGAAACGCCTCGGGATCTGCATGATATGCCAGACACGTCGTCTGCTCAACCGCTCCATTACGACTCCGAGGATGAAATTCCAGAGCAAGGTTTCCTGTATCAAAGAGAAGCCGAGTGGTTCCTTCAACGGACTTTTGGAGGAAGACCGTGGAGACTGAAGATTCAAGGTATGCTCTTGTTTTCTTATTTCTTCCAATTAAACCATTTTCCAGATGACACTGCCTACCTCTTCAATCCCATCTTCTTCCGCCACATCAAGCAGGAAAAGAGAAAGGTTAGCGGCGCCGCCTATATTTATAGGAGTTCCATGAGAGGAGCTTATCCTCACGTTTTATGGAAGGATCTTCARGAAGATGAGAAGAATGTATGGAATGAGGTGCACAGATATTTGAGCGTCAGGCAACAGAGGGAGATCGAGAAAGGACTCATCAAGATCAAAGAGATGCCCACAAGGATAAAAGCCGAGCCAAGAGACGAAGGATATGAGCGAGCAGCGAATGGAACGGGGCAACATTGGCAGGCCCAACAAGTTCCAATTCCACAACATCAAGGATATACACCAGGACCACCATATCCGGGGTATCCTCATCCAGGAATGCCGATGCCGACAATGCCACCACCACACCCTATGTGGCACCAACCACAACCGGAGAACCAATTAAATACGGGACCACAAAATGGTTGGATTGGAGGACCGATGATGCATTTCCAAATGCCACAAGAAGCAATGCATGGTCAGATGCCAATGGAAATGCAGCACAGGATGCCGGCAGAGCCAATGCAGGCCGCACCAGTTCCAAGGAAACATGTGCAGATCAAGGAAGAGATCATTGATGAAGATGATTGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTAAACCATTTTCCAGATGA</pcr_primer_p1>
		<pcr_primer_p2>CTCTTTGATCTTGATGAGTCCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATTAAACCATTTTCCAGATGACACTGCCTACCTCTTCAATCCCATCTTCTTCCGCCACATCAAGCAGGAAAAGAGAAAGGTTAGCGGCGCCGCCTATATTTATAGGAGTTCCATGAGAGGAGCTTATCCTCACGTTTTATGGAAGGATCTTCAAGAAGATGAGAAGAATGTATGGAATGAGGTGCACAGATATTTGAGCGTCAGGCAACAGAGGGAGATCGAGAAAGGACTCATCAAGATCAAAGAG</canonical_amplicon>
		<polymorphic_amplicon>AATTAAACCATTTTCCAGATGACACTGCCTACCTCTTCAATCCCATCTTCTTCCGCCACATCAAGCAGGAAAAGAGAAAGGTTAGCGGCGCCGCCTATATTTATAGGAGTTCCATGAGAGGAGCTTATCCTCACGTTTTATGGAAGGATCTTCARGAAGATGAGAAGAATGTATGGAATGAGGTGCACAGATATTTGAGCGTCAGGCAACAGAGGGAGATCGAGAAAGGACTCATCAAGATCAAAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31879</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>293166</contig_pos>
        <strand>+</strand>
        <context>TCAAAGAGAT[A/G]CCCACAAGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCAGGCAACAGAGGGAGATCGAGAAAGGACTCATCAAGATCAAAGAGAT</left_flank>
        <right_flank>CCCACAAGGATAAAAGCCGAGCCAAGAGACGAAGGATATGAGCGAGCAGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAGAGACAACTGGCTCAACGAGGCACCAGTGCTCACACCTCATTCCCCAGTCCTGAAACGCCTCGGGATCTGCATGATATGCCAGACACGTCGTCTGCTCAACCGCTCCATTACGACTCCGAGGATGAAATTCCAGAGCAAGGTTTCCTGTATCAAAGAGAAGCCGAGTGGTTCCTTCAACGGACTTTTGGAGGAAGACCGTGGAGACTGAAGATTCAAGGTATGCTCTTGTTTTCTTATTTCTTCCAATTAAACCATTTTCCAGATGACACTGCCTACCTCTTCAATCCCATCTTCTTCCGCCACATCAAGCAGGAAAAGAGAAAGGTTAGCGGCGCCGCCTATATTTATAGGAGTTCCATGAGAGGAGCTTATCCTCACGTTTTATGGAAGGATCTTCAAGAAGATGAGAAGAATGTATGGAATGAGGTGCACAGATATTTGAGCGTCAGGCAACAGAGGGAGATCGAGAAAGGACTCATCAAGATCAAAGAGATGCCCACAAGGATAAAAGCCGAGCCAAGAGACGAAGGATATGAGCGAGCAGCGAATGGAACGGGGCAACATTGGCAGGCCCAACAAGTTCCAATTCCACAACATCAAGGATATACACCAGGACCACCATATCCGGGGTATCCTCATCCAGGAATGCCGATGCCGACAATGCCACCACCACACCCTATGTGGCACCAACCACAACCGGAGAACCAATTAAATACGGGACCACAAAATGGTTGGATTGGAGGACCGATGATGCATTTCCAAATGCCACAAGAAGCAATGCATGGTCAGATGCCAATGGAAATGCAGCACAGGATGCCGGCAGAGCCAATGCAGGCCGCACCAGTTCCAAGGAAACATGTGCAGATCAAGGAAGAGATCATTGATGAAGATGATTGAGGTATTAGGTTGGCGGGAAAGTCTTTGTCACTTTTTCAATAGTTTATTCTCAAAGAAAAAATAACCGAATAATTAATTATATTGTCCATCATTATCAA</canonical>
            <polymorphic>TGGAGAGACAACTGGCTCAACGAGGCACCAGTGCTCACACCTCATTCCCCAGTCCTGAAACGCCTCGGGATCTGCATGATATGCCAGACACGTCGTCTGCTCAACCGCTCCATTACGACTCCGAGGATGAAATTCCAGAGCAAGGTTTCCTGTATCAAAGAGAAGCCGAGTGGTTCCTTCAACGGACTTTTGGAGGAAGACCGTGGAGACTGAAGATTCAAGGTATGCTCTTGTTTTCTTATTTCTTCCAATTAAACCATTTTCCAGATGACACTGCCTACCTCTTCAATCCCATCTTCTTCCGCCACATCAAGCAGGAAAAGAGAAAGGTTAGCGGCGCCGCCTATATTTATAGGAGTTCCATGAGAGGAGCTTATCCTCACGTTTTATGGAAGGATCTTCAAGAAGATGAGAAGAATGTATGGAATGAGGTGCACAGATATTTGAGCGTCAGGCAACAGAGGGAGATCGAGAAAGGACTCATCAAGATCAAAGAGATRCCCACAAGGATAAAAGCCGAGCCAAGAGACGAAGGATATGAGCGAGCAGCGAATGGAACGGGGCAACATTGGCAGGCCCAACAAGTTCCAATTCCACAACATCAAGGATATACACCAGGACCACCATATCCGGGGTATCCTCATCCAGGAATGCCGATGCCGACAATGCCACCACCACACCCTATGTGGCACCAACCACAACCGGAGAACCAATTAAATACGGGACCACAAAATGGTTGGATTGGAGGACCGATGATGCATTTCCAAATGCCACAAGAAGCAATGCATGGTCAGATGCCAATGGAAATGCAGCACAGGATGCCGGCAGAGCCAATGCAGGCCGCACCAGTTCCAAGGAAACATGTGCAGATCAAGGAAGAGATCATTGATGAAGATGATTGAGGTATTAGGTTGGCGGGAAAGTCTTTGTCACTTTTTCAATAGTTTATTCTCAAAGAAAAAATAACCGAATAATTAATTATATTGTCCATCATTATCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCTTATCCTCACGTTTTATG</pcr_primer_p1>
		<pcr_primer_p2>CTGGTGTATATCCTTGATGTTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAGCTTATCCTCACGTTTTATGGAAGGATCTTCAAGAAGATGAGAAGAATGTATGGAATGAGGTGCACAGATATTTGAGCGTCAGGCAACAGAGGGAGATCGAGAAAGGACTCATCAAGATCAAAGAGATGCCCACAAGGATAAAAGCCGAGCCAAGAGACGAAGGATATGAGCGAGCAGCGAATGGAACGGGGCAACATTGGCAGGCCCAACAAGTTCCAATTCCACAACATCAAGGATATACACCAG</canonical_amplicon>
		<polymorphic_amplicon>GAGCTTATCCTCACGTTTTATGGAAGGATCTTCAAGAAGATGAGAAGAATGTATGGAATGAGGTGCACAGATATTTGAGCGTCAGGCAACAGAGGGAGATCGAGAAAGGACTCATCAAGATCAAAGAGATRCCCACAAGGATAAAAGCCGAGCCAAGAGACGAAGGATATGAGCGAGCAGCGAATGGAACGGGGCAACATTGGCAGGCCCAACAAGTTCCAATTCCACAACATCAAGGATATACACCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31880</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>293259</contig_pos>
        <strand>+</strand>
        <context>AAGTTCCAAT[G/T]CCACAACATC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGAGCAGCGAATGGAACGGGGCAACATTGGCAGGCCCAACAAGTTCCAAT</left_flank>
        <right_flank>CCACAACATCAAGGATATACACCAGGACCACCATATCCGGGGTATCCTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTCTGCTCAACCGCTCCATTACGACTCCGAGGATGAAATTCCAGAGCAAGGTTTCCTGTATCAAAGAGAAGCCGAGTGGTTCCTTCAACGGACTTTTGGAGGAAGACCGTGGAGACTGAAGATTCAAGGTATGCTCTTGTTTTCTTATTTCTTCCAATTAAACCATTTTCCAGATGACACTGCCTACCTCTTCAATCCCATCTTCTTCCGCCACATCAAGCAGGAAAAGAGAAAGGTTAGCGGCGCCGCCTATATTTATAGGAGTTCCATGAGAGGAGCTTATCCTCACGTTTTATGGAAGGATCTTCAAGAAGATGAGAAGAATGTATGGAATGAGGTGCACAGATATTTGAGCGTCAGGCAACAGAGGGAGATCGAGAAAGGACTCATCAAGATCAAAGAGATGCCCACAAGGATAAAAGCCGAGCCAAGAGACGAAGGATATGAGCGAGCAGCGAATGGAACGGGGCAACATTGGCAGGCCCAACAAGTTCCAATTCCACAACATCAAGGATATACACCAGGACCACCATATCCGGGGTATCCTCATCCAGGAATGCCGATGCCGACAATGCCACCACCACACCCTATGTGGCACCAACCACAACCGGAGAACCAATTAAATACGGGACCACAAAATGGTTGGATTGGAGGACCGATGATGCATTTCCAAATGCCACAAGAAGCAATGCATGGTCAGATGCCAATGGAAATGCAGCACAGGATGCCGGCAGAGCCAATGCAGGCCGCACCAGTTCCAAGGAAACATGTGCAGATCAAGGAAGAGATCATTGATGAAGATGATTGAGGTATTAGGTTGGCGGGAAAGTCTTTGTCACTTTTTCAATAGTTTATTCTCAAAGAAAAAATAACCGAATAATTAATTATATTGTCCATCATTATCAACAACATGTCTCCAACGTTCCCTCAATTTATGGATTCCATTGCGGTAGAATCCAGCCGGGCGTGAGGCAAAGTATTGTTTGAGTGCCGCTTCGA</canonical>
            <polymorphic>CGTCTGCTCAACCGCTCCATTACGACTCCGAGGATGAAATTCCAGAGCAAGGTTTCCTGTATCAAAGAGAAGCCGAGTGGTTCCTTCAACGGACTTTTGGAGGAAGACCGTGGAGACTGAAGATTCAAGGTATGCTCTTGTTTTCTTATTTCTTCCAATTAAACCATTTTCCAGATGACACTGCCTACCTCTTCAATCCCATCTTCTTCCGCCACATCAAGCAGGAAAAGAGAAAGGTTAGCGGCGCCGCCTATATTTATAGGAGTTCCATGAGAGGAGCTTATCCTCACGTTTTATGGAAGGATCTTCAAGAAGATGAGAAGAATGTATGGAATGAGGTGCACAGATATTTGAGCGTCAGGCAACAGAGGGAGATCGAGAAAGGACTCATCAAGATCAAAGAGATGCCCACAAGGATAAAAGCCGAGCCAAGAGACGAAGGATATGAGCGAGCAGCGAATGGAACGGGGCAACATTGGCAGGCCCAACAAGTTCCAATKCCACAACATCAAGGATATACACCAGGACCACCATATCCGGGGTATCCTCATCCAGGAATGCCGATGCCGACAATGCCACCACCACACCCTATGTGGCACCAACCACAACCGGAGAACCAATTAAATACGGGACCACAAAATGGTTGGATTGGAGGACCGATGATGCATTTCCAAATGCCACAAGAAGCAATGCATGGTCAGATGCCAATGGAAATGCAGCACAGGATGCCGGCAGAGCCAATGCAGGCCGCACCAGTTCCAAGGAAACATGTGCAGATCAAGGAAGAGATCATTGATGAAGATGATTGAGGTATTAGGTTGGCGGGAAAGTCTTTGTCACTTTTTCAATAGTTTATTCTCAAAGAAAAAATAACCGAATAATTAATTATATTGTCCATCATTATCAACAACATGTCTCCAACGTTCCCTCAATTTATGGATTCCATTGCGGTAGAATCCAGCCGGGCGTGAGGCAAAGTATTGTTTGAGTGCCGCTTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>340 261 122 119 70 47 37 4</canonical_bands>
                <polymorphic_bands>462 261 119 70 47 37 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGACTCATCAAGATCAAAGAG</pcr_primer_p1>
		<pcr_primer_p2>TCCCGTATTTAATTGGTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGACTCATCAAGATCAAAGAGATGCCCACAAGGATAAAAGCCGAGCCAAGAGACGAAGGATATGAGCGAGCAGCGAATGGAACGGGGCAACATTGGCAGGCCCAACAAGTTCCAATTCCACAACATCAAGGATATACACCAGGACCACCATATCCGGGGTATCCTCATCCAGGAATGCCGATGCCGACAATGCCACCACCACACCCTATGTGGCACCAACCACAACCGGAGAACCAATTAAATACGGGA</canonical_amplicon>
		<polymorphic_amplicon>AGGACTCATCAAGATCAAAGAGATGCCCACAAGGATAAAAGCCGAGCCAAGAGACGAAGGATATGAGCGAGCAGCGAATGGAACGGGGCAACATTGGCAGGCCCAACAAGTTCCAATKCCACAACATCAAGGATATACACCAGGACCACCATATCCGGGGTATCCTCATCCAGGAATGCCGATGCCGACAATGCCACCACCACACCCTATGTGGCACCAACCACAACCGGAGAACCAATTAAATACGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31881</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>293342</contig_pos>
        <strand>+</strand>
        <context>ATGCCACCAC[C/T]ACACCCTATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATATCCGGGGTATCCTCATCCAGGAATGCCGATGCCGACAATGCCACCAC</left_flank>
        <right_flank>ACACCCTATGTGGCACCAACCACAACCGGAGAACCAATTAAATACGGGAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCAACGGACTTTTGGAGGAAGACCGTGGAGACTGAAGATTCAAGGTATGCTCTTGTTTTCTTATTTCTTCCAATTAAACCATTTTCCAGATGACACTGCCTACCTCTTCAATCCCATCTTCTTCCGCCACATCAAGCAGGAAAAGAGAAAGGTTAGCGGCGCCGCCTATATTTATAGGAGTTCCATGAGAGGAGCTTATCCTCACGTTTTATGGAAGGATCTTCAAGAAGATGAGAAGAATGTATGGAATGAGGTGCACAGATATTTGAGCGTCAGGCAACAGAGGGAGATCGAGAAAGGACTCATCAAGATCAAAGAGATGCCCACAAGGATAAAAGCCGAGCCAAGAGACGAAGGATATGAGCGAGCAGCGAATGGAACGGGGCAACATTGGCAGGCCCAACAAGTTCCAATTCCACAACATCAAGGATATACACCAGGACCACCATATCCGGGGTATCCTCATCCAGGAATGCCGATGCCGACAATGCCACCACCACACCCTATGTGGCACCAACCACAACCGGAGAACCAATTAAATACGGGACCACAAAATGGTTGGATTGGAGGACCGATGATGCATTTCCAAATGCCACAAGAAGCAATGCATGGTCAGATGCCAATGGAAATGCAGCACAGGATGCCGGCAGAGCCAATGCAGGCCGCACCAGTTCCAAGGAAACATGTGCAGATCAAGGAAGAGATCATTGATGAAGATGATTGAGGTATTAGGTTGGCGGGAAAGTCTTTGTCACTTTTTCAATAGTTTATTCTCAAAGAAAAAATAACCGAATAATTAATTATATTGTCCATCATTATCAACAACATGTCTCCAACGTTCCCTCAATTTATGGATTCCATTGCGGTAGAATCCAGCCGGGCGTGAGGCAAAGTATTGTTTGAGTGCCGCTTCGACCGCTCCACGGGAATTGAAGCTTCTTCCTTCGAAGGCACGTGTCATATCGCCAAATAACCAATAGTCGGAAGGAGCAAGATCA</canonical>
            <polymorphic>CTTCAACGGACTTTTGGAGGAAGACCGTGGAGACTGAAGATTCAAGGTATGCTCTTGTTTTCTTATTTCTTCCAATTAAACCATTTTCCAGATGACACTGCCTACCTCTTCAATCCCATCTTCTTCCGCCACATCAAGCAGGAAAAGAGAAAGGTTAGCGGCGCCGCCTATATTTATAGGAGTTCCATGAGAGGAGCTTATCCTCACGTTTTATGGAAGGATCTTCAAGAAGATGAGAAGAATGTATGGAATGAGGTGCACAGATATTTGAGCGTCAGGCAACAGAGGGAGATCGAGAAAGGACTCATCAAGATCAAAGAGATGCCCACAAGGATAAAAGCCGAGCCAAGAGACGAAGGATATGAGCGAGCAGCGAATGGAACGGGGCAACATTGGCAGGCCCAACAAGTTCCAATTCCACAACATCAAGGATATACACCAGGACCACCATATCCGGGGTATCCTCATCCAGGAATGCCGATGCCGACAATGCCACCACYACACCCTATGTGGCACCAACCACAACCGGAGAACCAATTAAATACGGGACCACAAAATGGTTGGATTGGAGGACCGATGATGCATTTCCAAATGCCACAAGAAGCAATGCATGGTCAGATGCCAATGGAAATGCAGCACAGGATGCCGGCAGAGCCAATGCAGGCCGCACCAGTTCCAAGGAAACATGTGCAGATCAAGGAAGAGATCATTGATGAAGATGATTGAGGTATTAGGTTGGCGGGAAAGTCTTTGTCACTTTTTCAATAGTTTATTCTCAAAGAAAAAATAACCGAATAATTAATTATATTGTCCATCATTATCAACAACATGTCTCCAACGTTCCCTCAATTTATGGATTCCATTGCGGTAGAATCCAGCCGGGCGTGAGGCAAAGTATTGTTTGAGTGCCGCTTCGACCGCTCCACGGGAATTGAAGCTTCTTCCTTCGAAGGCACGTGTCATATCGCCAAATAACCAATAGTCGGAAGGAGCAAGATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>131 92 75 68 68 66 52 48 45 41 41 34 31 30 30 29 21 21 18 17 9 9 7 4 3 3 3 2 2</canonical_bands>
                <polymorphic_bands>131 92 75 68 68 66 52 48 45 41 41 34 31 30 30 29 21 21 18 17 9 9 7 5 4 3 3 2</polymorphic_bands>
            </assay>
            <assay>
                <site>CCANNNNNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>XcmI</enzyme>
                </isoschizomers>
                <canonical_bands>506 443 51</canonical_bands>
                <polymorphic_bands>557 443</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGACTCATCAAGATCAAAGAGA</pcr_primer_p1>
		<pcr_primer_p2>TGTGGTCCCGTATTTAATTG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GGACTCATCAAGATCAAAGAGATGCCCACAAGGATAAAAGCCGAGCCAAGAGACGAAGGATATGAGCGAGCAGCGAATGGAACGGGGCAACATTGGCAGGCCCAACAAGTTCCAATTCCACAACATCAAGGATATACACCAGGACCACCATATCCGGGGTATCCTCATCCAGGAATGCCGATGCCGACAATGCCACCACCACACCCTATGTGGCACCAACCACAACCGGAGAACCAATTAAATACGGGACCACA</canonical_amplicon>
		<polymorphic_amplicon>GGACTCATCAAGATCAAAGAGATGCCCACAAGGATAAAAGCCGAGCCAAGAGACGAAGGATATGAGCGAGCAGCGAATGGAACGGGGCAACATTGGCAGGCCCAACAAGTTCCAATTCCACAACATCAAGGATATACACCAGGACCACCATATCCGGGGTATCCTCATCCAGGAATGCCGATGCCGACAATGCCACCACYACACCCTATGTGGCACCAACCACAACCGGAGAACCAATTAAATACGGGACCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31882</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>313062</contig_pos>
        <strand>+</strand>
        <context>GATTCAAATT[C/G]CAGGACTACC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGATTTTTAAGGAGGCTACAAGCCTAGCGTTTTCTACAAAGATTCAAATT</left_flank>
        <right_flank>CAGGACTACCTCTCCACCCTAACCGGTGGATCGCGAATCCCCTTAATCCC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGATTTCAAAATGTCATACTTGAAACGTCTCCAGCTGTTCATTCAATAAATGTTTTTATTTTTTTACAGTGACAGGTTTTCAAAATAGAAAAGCAAAAACAAGGACTACGTTGGAACATCAATGGAAAGGCTCCCTTACCGTCAACGTTGAGCCCGTATATCTCATTTTCTGTGAAAGATATCAAAAAGTGGTCAATTGATAAAATATTGCTGATATTATGATAATAATTTTATTAGTTGACTACTTTTTAGNNNNNNNNNNTGTTCCTTTTGCTCTGGAGCTCTGTTCACATACAAGATACAGTATTCCAAATAATACCGTTTTGTAGTACTCGTGGAGCTCTATCATACCTAATTGAGTTGGTTCGAAAACATTGATTCTGAAAGAAGTTATGGCAAGGCCCGCGAAGGCCCGGCAAAGACCCGGATTACAAGTATGCTAACAAGTGGATTTTTAAGGAGGCTACAAGCCTAGCGTTTTCTACAAAGATTCAAATTGCAGGACTACCTCTCCACCCTAACCGGTGGATCGCGAATCCCCTTAATCCCGGACCCTTATCTCAACATGACATGCCCGGCAATCAACTCCAGGATCCGCCCACACCATCTACACTTTGACCCTCTCAAGTTATCCGGAACAGCTTTCGCCAGAATTGTGTACACTGATTATGAGTTCATCGAAAAGCAAATTCAAGTTTCCTACCATCCACAGAACTATTTTTGCTTTGCGGTGGACCAAAAATCACCAGAAGAGTTTCATGAGAAAATGAGAAAGCTGTCAGAGTGTCTACCAAATGTTATAGTGTTGCCTGGTGAGTGCTAAAGTCAGGAAAAATTGTGGAAAGTGTAATATATGCGTTGTTTTTATGTAGCGGTTAGTGTTGGCACCGAAATGGGGGTAATAAAGTCAGTGATAATGATAAGAAACTGATAATATCAAAATTGAAGTCGGTCAGACAATTCCCTGTTCACTACACTTTGAGGCGGGTCGAAGTTCAC</canonical>
            <polymorphic>TTGATTTCAAAATGTCATACTTGAAACGTCTCCAGCTGTTCATTCAATAAATGTTTTTATTTTTTTACAGTGACAGGTTTTCAAAATAGAAAAGCAAAAACAAGGACTACGTTGGAACATCAATGGAAAGGCTCCCTTACCGTCAACGTTGAGCCCGTATATCTCATTTTCTGTGAAAGATATCAAAAAGTGGTCAATTGATAAAATATTGCTGATATTATGATAATAATTTTATTAGTTGACTACTTTTTAGNNNNNNNNNNTGTTCCTTTTGCTCTGGAGCTCTGTTCACATACAAGATACAGTATTCCAAATAATACCGTTTTGTAGTACTCGTGGAGCTCTATCATACCTAATTGAGTTGGTTCGAAAACATTGATTCTGAAAGAAGTTATGGCAAGGCCCGCGAAGGCCCGGCAAAGACCCGGATTACAAGTATGCTAACAAGTGGATTTTTAAGGAGGCTACAAGCCTAGCGTTTTCTACAAAGATTCAAATTSCAGGACTACCTCTCCACCCTAACCGGTGGATCGCGAATCCCCTTAATCCCGGACCCTTATCTCAACATGACATGCCCGGCAATCAACTCCAGGATCCGCCCACACCATCTACACTTTGACCCTCTCAAGTTATCCGGAACAGCTTTCGCCAGAATTGTGTACACTGATTATGAGTTCATCGAAAAGCAAATTCAAGTTTCCTACCATCCACAGAACTATTTTTGCTTTGCGGTGGACCAAAAATCACCAGAAGAGTTTCATGAGAAAATGAGAAAGCTGTCAGAGTGTCTACCAAATGTTATAGTGTTGCCTGGTGAGTGCTAAAGTCAGGAAAAATTGTGGAAAGTGTAATATATGCGTTGTTTTTATGTAGCGGTTAGTGTTGGCACCGAAATGGGGGTAATAAAGTCAGTGATAATGATAAGAAACTGATAATATCAAAATTGAAGTCGGTCAGACAATTCCCTGTTCACTACACTTTGAGGCGGGTCGAAGTTCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAACAAGTGGATTTTTAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>GCTTTTCGATGAACTCATAATC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTAACAAGTGGATTTTTAAGGAGGCTACAAGCCTAGCGTTTTCTACAAAGATTCAAATTGCAGGACTACCTCTCCACCCTAACCGGTGGATCGCGAATCCCCTTAATCCCGGACCCTTATCTCAACATGACATGCCCGGCAATCAACTCCAGGATCCGCCCACACCATCTACACTTTGACCCTCTCAAGTTATCCGGAACAGCTTTCGCCAGAATTGTGTACACTGATTATGAGTTCATCGAAAAGC</canonical_amplicon>
		<polymorphic_amplicon>CTAACAAGTGGATTTTTAAGGAGGCTACAAGCCTAGCGTTTTCTACAAAGATTCAAATTSCAGGACTACCTCTCCACCCTAACCGGTGGATCGCGAATCCCCTTAATCCCGGACCCTTATCTCAACATGACATGCCCGGCAATCAACTCCAGGATCCGCCCACACCATCTACACTTTGACCCTCTCAAGTTATCCGGAACAGCTTTCGCCAGAATTGTGTACACTGATTATGAGTTCATCGAAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31883</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>313807</contig_pos>
        <strand></strand>
        <context>attacaggtt[T/G]AAAATATTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GTGATTGAGCTCAAACAAAAGACAGTGTGCGGGCCCTTCTATTACAGGTT</left_flank>
        <right_flank>AAAATATTAAAATCTGTCAGAAAACGTGTGTCGTATATTTGGCCATACAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCAGAAGAGTTTCATGAGAAAATGAGAAAGCTGTCAGAGTGTCTACCAAATGTTATAGTGTTGCCTGGTGAGTGCTAAAGTCAGGAAAAATTGTGGAAAGTGTAATATATGCGTTGTTTTTATGTAGCGGTTAGTGTTGGCACCGAAATGGGGGTAATAAAGTCAGTGATAATGATAAGAAACTGATAATATCAAAATTGAAGTCGGTCAGACAATTCCCTGTTCACTACACTTTGAGGCGGGTCGAAGTTCACATGTTCATATTGAGGCTTAGCCTTAATCAGTTACTGTGAAACCTGTAATAGAAGAGCACTCAACTTTCAACTTTGGGCCAATTTTTCTCAGTTCCAGTGAAAGATATTAAAAAGCTGTCAACTGATAAATTTTTGAACATAATATGAAACTTTCTTTAGTTGAAAACTTTTTGATATCTTGCATAGGAATTGAGGTGATTGAGCTCAAACAAAAGACAGTGTGCGGGCCCTTCTATTACAGGTTTAAAATATTAAAATCTGTCAGAAAACGTGTGTCGTATATTTGGCCATACAAAAAAAGTGGAAAAGAGAAAAAGAGAGAGTGGGAGAGACACTCCCGTGTCGCATCAAAAGGAGTACTTCCCCAACCTTGACCGCGTTTTAACACATGCTAAAGTACACATATTTCTGTTGGATTGCCATATCAACTTTTAATTAATGATCATCGTGATAAAAAGTACATAATTTATTAAATAAAATCGACAAAAAAGTTTTACAAAATGCAATTTTCTTTTCCCAATTGAACACGGACACTTCCTGGGTTGTTTTCAATCCGGTGTTTCTTATTTTCTCCATGTTGCGATTTCCTCTTCCTTGAATTATTAAAAGGGCATCGATAGTTTATATTATGAAGTTTCATTCATTTTTGTCATTTGTCTCCATGAAGAACCGTCCTCAACTTCTGGACAAGCAAACTCCGTAAACACTCTGATAGAATGCCCCGAAATCGTCAAATTTAAGCTAA</canonical>
            <polymorphic>ACCAGAAGAGTTTCATGAGAAAATGAGAAAGCTGTCAGAGTGTCTACCAAATGTTATAGTGTTGCCTGGTGAGTGCTAAAGTCAGGAAAAATTGTGGAAAGTGTAATATATGCGTTGTTTTTATGTAGCGGTTAGTGTTGGCACCGAAATGGGGGTAATAAAGTCAGTGATAATGATAAGAAACTGATAATATCAAAATTGAAGTCGGTCAGACAATTCCCTGTTCACTACACTTTGAGGCGGGTCGAAGTTCACATGTTCATATTGAGGCTTAGCCTTAATCAGTTACTGTGAAACCTGTAATAGAAGAGCACTCAACTTTCAACTTTGGGCCAATTTTTCTCAGTTCCAGTGAAAGATATTAAAAAGCTGTCAACTGATAAATTTTTGAACATAATATGAAACTTTCTTTAGTTGAAAACTTTTTGATATCTTGCATAGGAATTGAGGTGATTGAGCTCAAACAAAAGACAGTGTGCGGGCCCTTCTATTACAGGTTKAAAATATTAAAATCTGTCAGAAAACGTGTGTCGTATATTTGGCCATACAAAAAAAGTGGAAAAGAGAAAAAGAGAGAGTGGGAGAGACACTCCCGTGTCGCATCAAAAGGAGTACTTCCCCAACCTTGACCGCGTTTTAACACATGCTAAAGTACACATATTTCTGTTGGATTGCCATATCAACTTTTAATTAATGATCATCGTGATAAAAAGTACATAATTTATTAAATAAAATCGACAAAAAAGTTTTACAAAATGCAATTTTCTTTTCCCAATTGAACACGGACACTTCCTGGGTTGTTTTCAATCCGGTGTTTCTTATTTTCTCCATGTTGCGATTTCCTCTTCCTTGAATTATTAAAAGGGCATCGATAGTTTATATTATGAAGTTTCATTCATTTTTGTCATTTGTCTCCATGAAGAACCGTCCTCAACTTCTGGACAAGCAAACTCCGTAAACACTCTGATAGAATGCCCCGAAATCGTCAAATTTAAGCTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>278 137 134 133 130 84 50 34 8 8 4</canonical_bands>
                <polymorphic_bands>278 145 134 133 130 84 50 34 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACATGTTCATATTGAGGCTTA</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTATGGCCAAATATACG</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>CACATGTTCATATTGAGGCTTAGCCTTAATCAGTTACTGTGAAACCTGTAATAGAAGAGCACTCAACTTTCAACTTTGGGCCAATTTTTCTCAGTTCCAGTGAAAGATATTAAAAAGCTGTCAACTGATAAATTTTTGAACATAATATGAAACTTTCTTTAGTTGAAAACTTTTTGATATCTTGCATAGGAATTGAGGTGATTGAGCTCAAACAAAAGACAGTGTGCGGGCCCTTCTATTACAGGTTTAAAATATTAAAATCTGTCAGAAAACGTGTGTCGTATATTTGGCCATACAAAA</canonical_amplicon>
		<polymorphic_amplicon>CACATGTTCATATTGAGGCTTAGCCTTAATCAGTTACTGTGAAACCTGTAATAGAAGAGCACTCAACTTTCAACTTTGGGCCAATTTTTCTCAGTTCCAGTGAAAGATATTAAAAAGCTGTCAACTGATAAATTTTTGAACATAATATGAAACTTTCTTTAGTTGAAAACTTTTTGATATCTTGCATAGGAATTGAGGTGATTGAGCTCAAACAAAAGACAGTGTGCGGGCCCTTCTATTACAGGTTKAAAATATTAAAATCTGTCAGAAAACGTGTGTCGTATATTTGGCCATACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31884</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>314203</contig_pos>
        <strand>+</strand>
        <context>GAAGTTTCAT[C/T]CATTTTTGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCTTGAATTATTAAAAGGGCATCGATAGTTTATATTATGAAGTTTCAT</left_flank>
        <right_flank>CATTTTTGTCATTTGTCTCCATGAAGAACCGTCCTCAACTTCTGGACAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATGAAACTTTCTTTAGTTGAAAACTTTTTGATATCTTGCATAGGAATTGAGGTGATTGAGCTCAAACAAAAGACAGTGTGCGGGCCCTTCTATTACAGGTTTAAAATATTAAAATCTGTCAGAAAACGTGTGTCGTATATTTGGCCATACAAAAAAAGTGGAAAAGAGAAAAAGAGAGAGTGGGAGAGACACTCCCGTGTCGCATCAAAAGGAGTACTTCCCCAACCTTGACCGCGTTTTAACACATGCTAAAGTACACATATTTCTGTTGGATTGCCATATCAACTTTTAATTAATGATCATCGTGATAAAAAGTACATAATTTATTAAATAAAATCGACAAAAAAGTTTTACAAAATGCAATTTTCTTTTCCCAATTGAACACGGACACTTCCTGGGTTGTTTTCAATCCGGTGTTTCTTATTTTCTCCATGTTGCGATTTCCTCTTCCTTGAATTATTAAAAGGGCATCGATAGTTTATATTATGAAGTTTCATTCATTTTTGTCATTTGTCTCCATGAAGAACCGTCCTCAACTTCTGGACAAGCAAACTCCGTAAACACTCTGATAGAATGCCCCGAAATCGTCAAATTTAAGCTAATATATCTCACTTCCTATGCAAGATTTCAAAAAGTAGTCAATCAATAAAACATTGGTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATATCTTCTACATGAACCGAGATAAATTGACTCAAAGATGACTGTTCCCATCCTGAACGAAGCCTACCCTATACGTGCACTTTGAACTCATTTATTTCGGTTTTGAGAGGCACTAAAAAGTAGTCAACTAATAAAATTATTATCATAATATCAGCAATATTTTATCAATTGACCACTTTTTGATATCTTTCACAGAAAATGAGATATACGGGCTCAACGTTGACGGTAAGGGAGCCTTTCCATTGATGTTCCAACGTAGTCCTTGTTTTTGCTTTTCTATTTTGAAAACCTGTCACTGTAA</canonical>
            <polymorphic>ATATGAAACTTTCTTTAGTTGAAAACTTTTTGATATCTTGCATAGGAATTGAGGTGATTGAGCTCAAACAAAAGACAGTGTGCGGGCCCTTCTATTACAGGTTTAAAATATTAAAATCTGTCAGAAAACGTGTGTCGTATATTTGGCCATACAAAAAAAGTGGAAAAGAGAAAAAGAGAGAGTGGGAGAGACACTCCCGTGTCGCATCAAAAGGAGTACTTCCCCAACCTTGACCGCGTTTTAACACATGCTAAAGTACACATATTTCTGTTGGATTGCCATATCAACTTTTAATTAATGATCATCGTGATAAAAAGTACATAATTTATTAAATAAAATCGACAAAAAAGTTTTACAAAATGCAATTTTCTTTTCCCAATTGAACACGGACACTTCCTGGGTTGTTTTCAATCCGGTGTTTCTTATTTTCTCCATGTTGCGATTTCCTCTTCCTTGAATTATTAAAAGGGCATCGATAGTTTATATTATGAAGTTTCATYCATTTTTGTCATTTGTCTCCATGAAGAACCGTCCTCAACTTCTGGACAAGCAAACTCCGTAAACACTCTGATAGAATGCCCCGAAATCGTCAAATTTAAGCTAATATATCTCACTTCCTATGCAAGATTTCAAAAAGTAGTCAATCAATAAAACATTGGTGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATATCTTCTACATGAACCGAGATAAATTGACTCAAAGATGACTGTTCCCATCCTGAACGAAGCCTACCCTATACGTGCACTTTGAACTCATTTATTTCGGTTTTGAGAGGCACTAAAAAGTAGTCAACTAATAAAATTATTATCATAATATCAGCAATATTTTATCAATTGACCACTTTTTGATATCTTTCACAGAAAATGAGATATACGGGCTCAACGTTGACGGTAAGGGAGCCTTTCCATTGATGTTCCAACGTAGTCCTTGTTTTTGCTTTTCTATTTTGAAAACCTGTCACTGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATCATCGTGATAAAAAGTACA</pcr_primer_p1>
		<pcr_primer_p2>GTTTGCTTGTCCAGAAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TGATCATCGTGATAAAAAGTACATAATTTATTAAATAAAATCGACAAAAAAGTTTTACAAAATGCAATTTTCTTTTCCCAATTGAACACGGACACTTCCTGGGTTGTTTTCAATCCGGTGTTTCTTATTTTCTCCATGTTGCGATTTCCTCTTCCTTGAATTATTAAAAGGGCATCGATAGTTTATATTATGAAGTTTCATTCATTTTTGTCATTTGTCTCCATGAAGAACCGTCCTCAACTTCTGGACAAGCAAAC</canonical_amplicon>
		<polymorphic_amplicon>TGATCATCGTGATAAAAAGTACATAATTTATTAAATAAAATCGACAAAAAAGTTTTACAAAATGCAATTTTCTTTTCCCAATTGAACACGGACACTTCCTGGGTTGTTTTCAATCCGGTGTTTCTTATTTTCTCCATGTTGCGATTTCCTCTTCCTTGAATTATTAAAAGGGCATCGATAGTTTATATTATGAAGTTTCATYCATTTTTGTCATTTGTCTCCATGAAGAACCGTCCTCAACTTCTGGACAAGCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31885</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>332672</contig_pos>
        <strand>+</strand>
        <context>ccgagcgacc[A/G]CTGATTTAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGACCGACCGCCGGTCTAGCTGACCAACCGTCGATCAAGCCGAGCGACC</left_flank>
        <right_flank>CTGATTTAGGCCACCGACCGCAGACCGAGATCTGATCCAGCCAACTGATC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGACCGACGACCAATAATTGCCATCTTCGGCCCAAAAAGCCTAAAAGCCTAAAAAATCAAAAAATCAATACTTACCGTCTTCTTAACAAGCAAGCAAATTGGCTGCCCGCCAACAGTTCGTCCGAACAACGACGCGGCCTTCGGTGCCTCTTTTGGAGTCTCCTCGACCACCGAAAAATGCCCTTTTTTCGAAATTTGGGACAAAACAGTCCGCAATTTCAGATCCGGGCTAGTTTTGACACTCTGCGACGCCACAAAATCGACCTCATCCGAAGCCAGCAACGCCGACCAGTCATCTTTTCGGATTGAGGAGTTTGGAATGACGAAGACCACTGAAGGAAGGGGAAGGCGAAGGTCCAGTTTGTCGTCTCGCGTGCCTTCATCGTCCTGGAAAAAAATTTCGGAAAATTATCATTTCGGTCGAGAAGTTCAGCTGACCGATCGACCGCCGACCGACCGCCGGTCTAGCTGACCAACCGTCGATCAAGCCGAGCGACCACTGATTTAGGCCACCGACCGCAGACCGAGATCTGATCCAGCCAACTGATCGCCAACCGACCGTTCGGCGATCCAGCCAACCGACCGCAGACCGGCAGCCGATCCAGCCGTTCGAGCTGACCGACTGTCGATCAAGCCGGCCGACCGCCGACCCAGCCAACCAACCGGCGACCGACCGCCGATCTAACCCACAAGCCGACAACCTATGGGCGGTCGGTCGTCGGTCGAAAGCCAAAATAAATAAAAAAAACACTCACCACTAAAAAGTAGGTCACCGTTCCTCTCATCATTCTCGACACATTAGTCGCCGTCACCTGCACATCAAACGACGCCTCTGATGACGTGGCATCCAGCTCCTCGGCCAACAGAATCGCCTCATCTGAATCCTTGACGACCTTCGCATTAAGAGTATCCACCATGGACAATTCCACCTTCTGAATCTTCGCGTCACCTAGCTTCTGGACCTTCAGCGTCACCGTCACCCTTCCATGATCCAGCGGA</canonical>
            <polymorphic>CCGACCGACGACCAATAATTGCCATCTTCGGCCCAAAAAGCCTAAAAGCCTAAAAAATCAAAAAATCAATACTTACCGTCTTCTTAACAAGCAAGCAAATTGGCTGCCCGCCAACAGTTCGTCCGAACAACGACGCGGCCTTCGGTGCCTCTTTTGGAGTCTCCTCGACCACCGAAAAATGCCCTTTTTTCGAAATTTGGGACAAAACAGTCCGCAATTTCAGATCCGGGCTAGTTTTGACACTCTGCGACGCCACAAAATCGACCTCATCCGAAGCCAGCAACGCCGACCAGTCATCTTTTCGGATTGAGGAGTTTGGAATGACGAAGACCACTGAAGGAAGGGGAAGGCGAAGGTCCAGTTTGTCGTCTCGCGTGCCTTCATCGTCCTGGAAAAAAATTTCGGAAAATTATCATTTCGGTCGAGAAGTTCAGCTGACCGATCGACCGCCGACCGACCGCCGGTCTAGCTGACCAACCGTCGATCAAGCCGAGCGACCRCTGATTTAGGCCACCGACCGCAGACCGAGATCTGATCCAGCCAACTGATCGCCAACCGACCGTTCGGCGATCCAGCCAACCGACCGCAGACCGGCAGCCGATCCAGCCGTTCGAGCTGACCGACTGTCGATCAAGCCGGCCGACCGCCGACCCAGCCAACCAACCGGCGACCGACCGCCGATCTAACCCACAAGCCGACAACCTATGGGCGGTCGGTCGTCGGTCGAAAGCCAAAATAAATAAAAAAAACACTCACCACTAAAAAGTAGGTCACCGTTCCTCTCATCATTCTCGACACATTAGTCGCCGTCACCTGCACATCAAACGACGCCTCTGATGACGTGGCATCCAGCTCCTCGGCCAACAGAATCGCCTCATCTGAATCCTTGACGACCTTCGCATTAAGAGTATCCACCATGGACAATTCCACCTTCTGAATCTTCGCGTCACCTAGCTTCTGGACCTTCAGCGTCACCGTCACCCTTCCATGATCCAGCGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>177 147 123 78 71 70 61 44 26 25 24 24 20 20 15 15 15 13 13 6 6 4 3</canonical_bands>
                <polymorphic_bands>177 147 136 78 71 70 61 44 26 25 24 24 20 20 15 15 15 13 6 6 4 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCATTTCGGTCGAGAAGT</pcr_primer_p1>
		<pcr_primer_p2>CCTACTTTTTAGTGGTGAGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>360</pcr_amplicon_size>
		<canonical_amplicon>TATCATTTCGGTCGAGAAGTTCAGCTGACCGATCGACCGCCGACCGACCGCCGGTCTAGCTGACCAACCGTCGATCAAGCCGAGCGACCACTGATTTAGGCCACCGACCGCAGACCGAGATCTGATCCAGCCAACTGATCGCCAACCGACCGTTCGGCGATCCAGCCAACCGACCGCAGACCGGCAGCCGATCCAGCCGTTCGAGCTGACCGACTGTCGATCAAGCCGGCCGACCGCCGACCCAGCCAACCAACCGGCGACCGACCGCCGATCTAACCCACAAGCCGACAACCTATGGGCGGTCGGTCGTCGGTCGAAAGCCAAAATAAATAAAAAAAACACTCACCACTAAAAAGTAGG</canonical_amplicon>
		<polymorphic_amplicon>TATCATTTCGGTCGAGAAGTTCAGCTGACCGATCGACCGCCGACCGACCGCCGGTCTAGCTGACCAACCGTCGATCAAGCCGAGCGACCRCTGATTTAGGCCACCGACCGCAGACCGAGATCTGATCCAGCCAACTGATCGCCAACCGACCGTTCGGCGATCCAGCCAACCGACCGCAGACCGGCAGCCGATCCAGCCGTTCGAGCTGACCGACTGTCGATCAAGCCGGCCGACCGCCGACCCAGCCAACCAACCGGCGACCGACCGCCGATCTAACCCACAAGCCGACAACCTATGGGCGGTCGGTCGTCGGTCGAAAGCCAAAATAAATAAAAAAAACACTCACCACTAAAAAGTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31886</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>333960</contig_pos>
        <strand></strand>
        <context>cgattcagcc[A/G]actacttttc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGCCGATCACGCCGACCGCCAATCAAGTCAACCGACCGCCGATTCAGCC</left_flank>
        <right_flank>ACTACTTTTCCAGCCGGCCGGCCACCGACCGACCGCCGATCCGGTCGACC</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATTCGATTTTGAAGCCGACGACTCCGGAAGACTCTTCTTCTTCTTTAGTTTGGCCACTCCCGTCTTTCCGGTCTTCTTTTTCTTCTCCTTCACGGGTTTTGGAGCCTCAACGACCGGCCGCGGCTCAAAAGTGGTCGGCGGGCGAGGGACCAGCGGGCCGGGCTTCTGTTGAGATGGATAGGTTCGGGTGTAGGCTTGAGGCGCTTTGACGATTTCATCCGGTCGGAGCGGGGCGTCGAGATCCATGTCAAGAGCGCGGAATTCGTCGGTGGGAATGTTCTGGAACTGAGAAATGAGATTAGAGGAGTTTCGTTTAGTTTTAGGTCTAGCAGTTATTCAATGCTTCTACATGGTCGGGAAGTTTGGGGTTAGCTGGCCGACGACCGATCTGGCCGACCGCAGAAGCAGCTGAACAATAGTCGACCCAGCCGAAGGACCGTCGACCAACCGCCGATCACGCCGACCGCCAATCAAGTCAACCGACCGCCGATTCAGCCAACTACTTTTCCAGCCGGCCGGCCACCGACCGACCGCCGATCCGGTCGACCGACCACAGATACAGGTGACCGATAGTTGCTAACCGCCGACCGACCGGCGATCCAGCTGATCGATCGCCGATCCAGTAGATCGGATTCAGCCTTTTGACCGATGTCCAACAGCCGACCCACTTCCGACCGACCACCGATTCAGCCGACCGATCGCCGATTAATCTAACCGACCGATCGCCGACCAATCTGACCGACCGATCGCCGACCAATCTGACCGAGCGCCGACCGACCGCGCTAACCGACCAGCGATCTTGCCGATCCTGCGGACCTGCCACCGAATCAGCCGATTAAGCTGAGTGATCGGCCGGCGCTTTGGCTTTCATTCCGGTCGGTCAAAAATCAGCTCTGCGATCGGTCGACGGTCCGTCAGCGGTCGAAATGTTTTGACCGACCGAAACGACATTTTTTGGCACCAAAAGTAAAATTTCGAGCTCAAAAAGAAACTGAAAT</canonical>
            <polymorphic>AGATTCGATTTTGAAGCCGACGACTCCGGAAGACTCTTCTTCTTCTTTAGTTTGGCCACTCCCGTCTTTCCGGTCTTCTTTTTCTTCTCCTTCACGGGTTTTGGAGCCTCAACGACCGGCCGCGGCTCAAAAGTGGTCGGCGGGCGAGGGACCAGCGGGCCGGGCTTCTGTTGAGATGGATAGGTTCGGGTGTAGGCTTGAGGCGCTTTGACGATTTCATCCGGTCGGAGCGGGGCGTCGAGATCCATGTCAAGAGCGCGGAATTCGTCGGTGGGAATGTTCTGGAACTGAGAAATGAGATTAGAGGAGTTTCGTTTAGTTTTAGGTCTAGCAGTTATTCAATGCTTCTACATGGTCGGGAAGTTTGGGGTTAGCTGGCCGACGACCGATCTGGCCGACCGCAGAAGCAGCTGAACAATAGTCGACCCAGCCGAAGGACCGTCGACCAACCGCCGATCACGCCGACCGCCAATCAAGTCAACCGACCGCCGATTCAGCCRACTACTTTTCCAGCCGGCCGGCCACCGACCGACCGCCGATCCGGTCGACCGACCACAGATACAGGTGACCGATAGTTGCTAACCGCCGACCGACCGGCGATCCAGCTGATCGATCGCCGATCCAGTAGATCGGATTCAGCCTTTTGACCGATGTCCAACAGCCGACCCACTTCCGACCGACCACCGATTCAGCCGACCGATCGCCGATTAATCTAACCGACCGATCGCCGACCAATCTGACCGACCGATCGCCGACCAATCTGACCGAGCGCCGACCGACCGCGCTAACCGACCAGCGATCTTGCCGATCCTGCGGACCTGCCACCGAATCAGCCGATTAAGCTGAGTGATCGGCCGGCGCTTTGGCTTTCATTCCGGTCGGTCAAAAATCAGCTCTGCGATCGGTCGACGGTCCGTCAGCGGTCGAAATGTTTTGACCGACCGAAACGACATTTTTTGGCACCAAAAGTAAAATTTCGAGCTCAAAAAGAAACTGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTATTCAATGCTTCTACATGGT</pcr_primer_p1>
		<pcr_primer_p2>AAGGCTGAATCCGATCTACT</pcr_primer_p2>
		<pcr_amplicon_size>310</pcr_amplicon_size>
		<canonical_amplicon>GTTATTCAATGCTTCTACATGGTCGGGAAGTTTGGGGTTAGCTGGCCGACGACCGATCTGGCCGACCGCAGAAGCAGCTGAACAATAGTCGACCCAGCCGAAGGACCGTCGACCAACCGCCGATCACGCCGACCGCCAATCAAGTCAACCGACCGCCGATTCAGCCAACTACTTTTCCAGCCGGCCGGCCACCGACCGACCGCCGATCCGGTCGACCGACCACAGATACAGGTGACCGATAGTTGCTAACCGCCGACCGACCGGCGATCCAGCTGATCGATCGCCGATCCAGTAGATCGGATTCAGCCTT</canonical_amplicon>
		<polymorphic_amplicon>GTTATTCAATGCTTCTACATGGTCGGGAAGTTTGGGGTTAGCTGGCCGACGACCGATCTGGCCGACCGCAGAAGCAGCTGAACAATAGTCGACCCAGCCGAAGGACCGTCGACCAACCGCCGATCACGCCGACCGCCAATCAAGTCAACCGACCGCCGATTCAGCCRACTACTTTTCCAGCCGGCCGGCCACCGACCGACCGCCGATCCGGTCGACCGACCACAGATACAGGTGACCGATAGTTGCTAACCGCCGACCGACCGGCGATCCAGCTGATCGATCGCCGATCCAGTAGATCGGATTCAGCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31887</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>334025</contig_pos>
        <strand></strand>
        <context>acagatacag[G/C]tgaccgatag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CGGCCGGCCACCGACCGACCGCCGATCCGGTCGACCGACCACAGATACAG</left_flank>
        <right_flank>TGACCGATAGTTGCTAACCGCCGACCGACCGGCGATCCAGCTGATCGATC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTCCGGTCTTCTTTTTCTTCTCCTTCACGGGTTTTGGAGCCTCAACGACCGGCCGCGGCTCAAAAGTGGTCGGCGGGCGAGGGACCAGCGGGCCGGGCTTCTGTTGAGATGGATAGGTTCGGGTGTAGGCTTGAGGCGCTTTGACGATTTCATCCGGTCGGAGCGGGGCGTCGAGATCCATGTCAAGAGCGCGGAATTCGTCGGTGGGAATGTTCTGGAACTGAGAAATGAGATTAGAGGAGTTTCGTTTAGTTTTAGGTCTAGCAGTTATTCAATGCTTCTACATGGTCGGGAAGTTTGGGGTTAGCTGGCCGACGACCGATCTGGCCGACCGCAGAAGCAGCTGAACAATAGTCGACCCAGCCGAAGGACCGTCGACCAACCGCCGATCACGCCGACCGCCAATCAAGTCAACCGACCGCCGATTCAGCCAACTACTTTTCCAGCCGGCCGGCCACCGACCGACCGCCGATCCGGTCGACCGACCACAGATACAGGTGACCGATAGTTGCTAACCGCCGACCGACCGGCGATCCAGCTGATCGATCGCCGATCCAGTAGATCGGATTCAGCCTTTTGACCGATGTCCAACAGCCGACCCACTTCCGACCGACCACCGATTCAGCCGACCGATCGCCGATTAATCTAACCGACCGATCGCCGACCAATCTGACCGACCGATCGCCGACCAATCTGACCGAGCGCCGACCGACCGCGCTAACCGACCAGCGATCTTGCCGATCCTGCGGACCTGCCACCGAATCAGCCGATTAAGCTGAGTGATCGGCCGGCGCTTTGGCTTTCATTCCGGTCGGTCAAAAATCAGCTCTGCGATCGGTCGACGGTCCGTCAGCGGTCGAAATGTTTTGACCGACCGAAACGACATTTTTTGGCACCAAAAGTAAAATTTCGAGCTCAAAAAGAAACTGAAATCGCCTCACCTTCTCATCCTCGTCATCTGTCGATTTGGCTCCCTCGGGCATTTCTCCATCATTCCT</canonical>
            <polymorphic>CTTTCCGGTCTTCTTTTTCTTCTCCTTCACGGGTTTTGGAGCCTCAACGACCGGCCGCGGCTCAAAAGTGGTCGGCGGGCGAGGGACCAGCGGGCCGGGCTTCTGTTGAGATGGATAGGTTCGGGTGTAGGCTTGAGGCGCTTTGACGATTTCATCCGGTCGGAGCGGGGCGTCGAGATCCATGTCAAGAGCGCGGAATTCGTCGGTGGGAATGTTCTGGAACTGAGAAATGAGATTAGAGGAGTTTCGTTTAGTTTTAGGTCTAGCAGTTATTCAATGCTTCTACATGGTCGGGAAGTTTGGGGTTAGCTGGCCGACGACCGATCTGGCCGACCGCAGAAGCAGCTGAACAATAGTCGACCCAGCCGAAGGACCGTCGACCAACCGCCGATCACGCCGACCGCCAATCAAGTCAACCGACCGCCGATTCAGCCAACTACTTTTCCAGCCGGCCGGCCACCGACCGACCGCCGATCCGGTCGACCGACCACAGATACAGSTGACCGATAGTTGCTAACCGCCGACCGACCGGCGATCCAGCTGATCGATCGCCGATCCAGTAGATCGGATTCAGCCTTTTGACCGATGTCCAACAGCCGACCCACTTCCGACCGACCACCGATTCAGCCGACCGATCGCCGATTAATCTAACCGACCGATCGCCGACCAATCTGACCGACCGATCGCCGACCAATCTGACCGAGCGCCGACCGACCGCGCTAACCGACCAGCGATCTTGCCGATCCTGCGGACCTGCCACCGAATCAGCCGATTAAGCTGAGTGATCGGCCGGCGCTTTGGCTTTCATTCCGGTCGGTCAAAAATCAGCTCTGCGATCGGTCGACGGTCCGTCAGCGGTCGAAATGTTTTGACCGACCGAAACGACATTTTTTGGCACCAAAAGTAAAATTTCGAGCTCAAAAAGAAACTGAAATCGCCTCACCTTCTCATCCTCGTCATCTGTCGATTTGGCTCCCTCGGGCATTTCTCCATCATTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGTNACC</site>
                <isoschizomers>
                    <enzyme>BstEII</enzyme>
                    <enzyme>BstPI</enzyme>
                    <enzyme>Eco91I</enzyme>
                    <enzyme>EcoO65I</enzyme>
                    <enzyme>PspEI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>186 141 113 102 81 65 58 57 45 41 31 29 25 14 12</canonical_bands>
                <polymorphic_bands>186 141 114 113 81 65 58 57 45 41 31 29 25 14</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTATTCAATGCTTCTACATGGT</pcr_primer_p1>
		<pcr_primer_p2>AAGGCTGAATCCGATCTACT</pcr_primer_p2>
		<pcr_amplicon_size>310</pcr_amplicon_size>
		<canonical_amplicon>GTTATTCAATGCTTCTACATGGTCGGGAAGTTTGGGGTTAGCTGGCCGACGACCGATCTGGCCGACCGCAGAAGCAGCTGAACAATAGTCGACCCAGCCGAAGGACCGTCGACCAACCGCCGATCACGCCGACCGCCAATCAAGTCAACCGACCGCCGATTCAGCCAACTACTTTTCCAGCCGGCCGGCCACCGACCGACCGCCGATCCGGTCGACCGACCACAGATACAGGTGACCGATAGTTGCTAACCGCCGACCGACCGGCGATCCAGCTGATCGATCGCCGATCCAGTAGATCGGATTCAGCCTT</canonical_amplicon>
		<polymorphic_amplicon>GTTATTCAATGCTTCTACATGGTCGGGAAGTTTGGGGTTAGCTGGCCGACGACCGATCTGGCCGACCGCAGAAGCAGCTGAACAATAGTCGACCCAGCCGAAGGACCGTCGACCAACCGCCGATCACGCCGACCGCCAATCAAGTCAACCGACCGCCGATTCAGCCAACTACTTTTCCAGCCGGCCGGCCACCGACCGACCGCCGATCCGGTCGACCGACCACAGATACAGSTGACCGATAGTTGCTAACCGCCGACCGACCGGCGATCCAGCTGATCGATCGCCGATCCAGTAGATCGGATTCAGCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31888</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>334070</contig_pos>
        <strand></strand>
        <context>atccagctga[T/C]cgatcgCCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TACAGGTGACCGATAGTTGCTAACCGCCGACCGACCGGCGATCCAGCTGA</left_flank>
        <right_flank>CGATCGCCGATCCAGTAGATCGGATTCAGCCTTTTGACCGATGTCCAACA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACGACCGGCCGCGGCTCAAAAGTGGTCGGCGGGCGAGGGACCAGCGGGCCGGGCTTCTGTTGAGATGGATAGGTTCGGGTGTAGGCTTGAGGCGCTTTGACGATTTCATCCGGTCGGAGCGGGGCGTCGAGATCCATGTCAAGAGCGCGGAATTCGTCGGTGGGAATGTTCTGGAACTGAGAAATGAGATTAGAGGAGTTTCGTTTAGTTTTAGGTCTAGCAGTTATTCAATGCTTCTACATGGTCGGGAAGTTTGGGGTTAGCTGGCCGACGACCGATCTGGCCGACCGCAGAAGCAGCTGAACAATAGTCGACCCAGCCGAAGGACCGTCGACCAACCGCCGATCACGCCGACCGCCAATCAAGTCAACCGACCGCCGATTCAGCCAACTACTTTTCCAGCCGGCCGGCCACCGACCGACCGCCGATCCGGTCGACCGACCACAGATACAGGTGACCGATAGTTGCTAACCGCCGACCGACCGGCGATCCAGCTGATCGATCGCCGATCCAGTAGATCGGATTCAGCCTTTTGACCGATGTCCAACAGCCGACCCACTTCCGACCGACCACCGATTCAGCCGACCGATCGCCGATTAATCTAACCGACCGATCGCCGACCAATCTGACCGACCGATCGCCGACCAATCTGACCGAGCGCCGACCGACCGCGCTAACCGACCAGCGATCTTGCCGATCCTGCGGACCTGCCACCGAATCAGCCGATTAAGCTGAGTGATCGGCCGGCGCTTTGGCTTTCATTCCGGTCGGTCAAAAATCAGCTCTGCGATCGGTCGACGGTCCGTCAGCGGTCGAAATGTTTTGACCGACCGAAACGACATTTTTTGGCACCAAAAGTAAAATTTCGAGCTCAAAAAGAAACTGAAATCGCCTCACCTTCTCATCCTCGTCATCTGTCGATTTGGCTCCCTCGGGCATTTCTCCATCATTCCTGTTCACTTTATGCACCACCCGATCCTCTTCCTCACTGCTCGTGCT</canonical>
            <polymorphic>AACGACCGGCCGCGGCTCAAAAGTGGTCGGCGGGCGAGGGACCAGCGGGCCGGGCTTCTGTTGAGATGGATAGGTTCGGGTGTAGGCTTGAGGCGCTTTGACGATTTCATCCGGTCGGAGCGGGGCGTCGAGATCCATGTCAAGAGCGCGGAATTCGTCGGTGGGAATGTTCTGGAACTGAGAAATGAGATTAGAGGAGTTTCGTTTAGTTTTAGGTCTAGCAGTTATTCAATGCTTCTACATGGTCGGGAAGTTTGGGGTTAGCTGGCCGACGACCGATCTGGCCGACCGCAGAAGCAGCTGAACAATAGTCGACCCAGCCGAAGGACCGTCGACCAACCGCCGATCACGCCGACCGCCAATCAAGTCAACCGACCGCCGATTCAGCCAACTACTTTTCCAGCCGGCCGGCCACCGACCGACCGCCGATCCGGTCGACCGACCACAGATACAGGTGACCGATAGTTGCTAACCGCCGACCGACCGGCGATCCAGCTGAYCGATCGCCGATCCAGTAGATCGGATTCAGCCTTTTGACCGATGTCCAACAGCCGACCCACTTCCGACCGACCACCGATTCAGCCGACCGATCGCCGATTAATCTAACCGACCGATCGCCGACCAATCTGACCGACCGATCGCCGACCAATCTGACCGAGCGCCGACCGACCGCGCTAACCGACCAGCGATCTTGCCGATCCTGCGGACCTGCCACCGAATCAGCCGATTAAGCTGAGTGATCGGCCGGCGCTTTGGCTTTCATTCCGGTCGGTCAAAAATCAGCTCTGCGATCGGTCGACGGTCCGTCAGCGGTCGAAATGTTTTGACCGACCGAAACGACATTTTTTGGCACCAAAAGTAAAATTTCGAGCTCAAAAAGAAACTGAAATCGCCTCACCTTCTCATCCTCGTCATCTGTCGATTTGGCTCCCTCGGGCATTTCTCCATCATTCCTGTTCACTTTATGCACCACCCGATCCTCTTCCTCACTGCTCGTGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>186 146 131 83 71 67 61 51 51 42 25 24 24 9 9 9 7 4</canonical_bands>
                <polymorphic_bands>186 146 131 83 71 67 61 51 51 42 25 24 24 13 9 9 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>296 184 129 103 80 65 53 52 20 18</canonical_bands>
                <polymorphic_bands>361 184 129 103 80 53 52 20 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTATTCAATGCTTCTACATGGT</pcr_primer_p1>
		<pcr_primer_p2>GCGATTTCAGTTTCTTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>670</pcr_amplicon_size>
		<canonical_amplicon>GTTATTCAATGCTTCTACATGGTCGGGAAGTTTGGGGTTAGCTGGCCGACGACCGATCTGGCCGACCGCAGAAGCAGCTGAACAATAGTCGACCCAGCCGAAGGACCGTCGACCAACCGCCGATCACGCCGACCGCCAATCAAGTCAACCGACCGCCGATTCAGCCAACTACTTTTCCAGCCGGCCGGCCACCGACCGACCGCCGATCCGGTCGACCGACCACAGATACAGGTGACCGATAGTTGCTAACCGCCGACCGACCGGCGATCCAGCTGATCGATCGCCGATCCAGTAGATCGGATTCAGCCTTTTGACCGATGTCCAACAGCCGACCCACTTCCGACCGACCACCGATTCAGCCGACCGATCGCCGATTAATCTAACCGACCGATCGCCGACCAATCTGACCGACCGATCGCCGACCAATCTGACCGAGCGCCGACCGACCGCGCTAACCGACCAGCGATCTTGCCGATCCTGCGGACCTGCCACCGAATCAGCCGATTAAGCTGAGTGATCGGCCGGCGCTTTGGCTTTCATTCCGGTCGGTCAAAAATCAGCTCTGCGATCGGTCGACGGTCCGTCAGCGGTCGAAATGTTTTGACCGACCGAAACGACATTTTTTGGCACCAAAAGTAAAATTTCGAGCTCAAAAAGAAACTGAAATCGC</canonical_amplicon>
		<polymorphic_amplicon>GTTATTCAATGCTTCTACATGGTCGGGAAGTTTGGGGTTAGCTGGCCGACGACCGATCTGGCCGACCGCAGAAGCAGCTGAACAATAGTCGACCCAGCCGAAGGACCGTCGACCAACCGCCGATCACGCCGACCGCCAATCAAGTCAACCGACCGCCGATTCAGCCAACTACTTTTCCAGCCGGCCGGCCACCGACCGACCGCCGATCCGGTCGACCGACCACAGATACAGGTGACCGATAGTTGCTAACCGCCGACCGACCGGCGATCCAGCTGAYCGATCGCCGATCCAGTAGATCGGATTCAGCCTTTTGACCGATGTCCAACAGCCGACCCACTTCCGACCGACCACCGATTCAGCCGACCGATCGCCGATTAATCTAACCGACCGATCGCCGACCAATCTGACCGACCGATCGCCGACCAATCTGACCGAGCGCCGACCGACCGCGCTAACCGACCAGCGATCTTGCCGATCCTGCGGACCTGCCACCGAATCAGCCGATTAAGCTGAGTGATCGGCCGGCGCTTTGGCTTTCATTCCGGTCGGTCAAAAATCAGCTCTGCGATCGGTCGACGGTCCGTCAGCGGTCGAAATGTTTTGACCGACCGAAACGACATTTTTTGGCACCAAAAGTAAAATTTCGAGCTCAAAAAGAAACTGAAATCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31889</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>334356</contig_pos>
        <strand>+</strand>
        <context>AAAATCAGCT[C/T]TGCGRTCGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTGATCGGCCGGCGCTTTGGCTTTCATTCCGGTCGGTCAAAAATCAGCT</left_flank>
        <right_flank>TGCGATCGGTCGACGGTCCGTCAGCGGTCGAAATGTTTTGACCGACCGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACCGCAGAAGCAGCTGAACAATAGTCGACCCAGCCGAAGGACCGTCGACCAACCGCCGATCACGCCGACCGCCAATCAAGTCAACCGACCGCCGATTCAGCCAACTACTTTTCCAGCCGGCCGGCCACCGACCGACCGCCGATCCGGTCGACCGACCACAGATACAGGTGACCGATAGTTGCTAACCGCCGACCGACCGGCGATCCAGCTGATCGATCGCCGATCCAGTAGATCGGATTCAGCCTTTTGACCGATGTCCAACAGCCGACCCACTTCCGACCGACCACCGATTCAGCCGACCGATCGCCGATTAATCTAACCGACCGATCGCCGACCAATCTGACCGACCGATCGCCGACCAATCTGACCGAGCGCCGACCGACCGCGCTAACCGACCAGCGATCTTGCCGATCCTGCGGACCTGCCACCGAATCAGCCGATTAAGCTGAGTGATCGGCCGGCGCTTTGGCTTTCATTCCGGTCGGTCAAAAATCAGCTCTGCGATCGGTCGACGGTCCGTCAGCGGTCGAAATGTTTTGACCGACCGAAACGACATTTTTTGGCACCAAAAGTAAAATTTCGAGCTCAAAAAGAAACTGAAATCGCCTCACCTTCTCATCCTCGTCATCTGTCGATTTGGCTCCCTCGGGCATTTCTCCATCATTCCTGTTCACTTTATGCACCACCCGATCCTCTTCCTCACTGCTCGTGCTCGTCGTTCGTCGCTTCTTCTTCTTCCCACCGCCCTTCTCCTTCTTTAACGTCTTCTTCTTTTTCTTTCCAATAGAATCAGAATCCTCCTTTGCCTTCTTCCAGCTCAACGTCGAGTCCTGCTGCTCCATGTATCGATGAAGGCCAACGACGCCGGGGATCTCCAGTGGGGATTGGATTTCTTTCTCTTTTTCGGCGGCTTCGGTTCGTTCGATGGGGTTGCCGAAGCGAGTTGGGCGCTTGGGGGCGGTTGCGGAGCCCTGGAAATTTGTTAATTAGGGTAATTAG</canonical>
            <polymorphic>GACCGCAGAAGCAGCTGAACAATAGTCGACCCAGCCGAAGGACCGTCGACCAACCGCCGATCACGCCGACCGCCAATCAAGTCAACCGACCGCCGATTCAGCCAACTACTTTTCCAGCCGGCCGGCCACCGACCGACCGCCGATCCGGTCGACCGACCACAGATACAGGTGACCGATAGTTGCTAACCGCCGACCGACCGGCGATCCAGCTGATCGATCGCCGATCCAGTAGATCGGATTCAGCCTTTTGACCGATGTCCAACAGCCGACCCACTTCCGACCGACCACCGATTCAGCCGACCGATCGCCGATTAATCTAACCGACCGATCGCCGACCAATCTGACCGACCGATCGCCGACCAATCTGACCGAGCGCCGACCGACCGCGCTAACCGACCAGCGATCTTGCCGATCCTGCGGACCTGCCACCGAATCAGCCGATTAAGCTGAGTGATCGGCCGGCGCTTTGGCTTTCATTCCGGTCGGTCAAAAATCAGCTYTGCGATCGGTCGACGGTCCGTCAGCGGTCGAAATGTTTTGACCGACCGAAACGACATTTTTTGGCACCAAAAGTAAAATTTCGAGCTCAAAAAGAAACTGAAATCGCCTCACCTTCTCATCCTCGTCATCTGTCGATTTGGCTCCCTCGGGCATTTCTCCATCATTCCTGTTCACTTTATGCACCACCCGATCCTCTTCCTCACTGCTCGTGCTCGTCGTTCGTCGCTTCTTCTTCTTCCCACCGCCCTTCTCCTTCTTTAACGTCTTCTTCTTTTTCTTTCCAATAGAATCAGAATCCTCCTTTGCCTTCTTCCAGCTCAACGTCGAGTCCTGCTGCTCCATGTATCGATGAAGGCCAACGACGCCGGGGATCTCCAGTGGGGATTGGATTTCTTTCTCTTTTTCGGCGGCTTCGGTTCGTTCGATGGGGTTGCCGAAGCGAGTTGGGCGCTTGGGGGCGGTTGCGGAGCCCTGGAAATTTGTTAATTAGGGTAATTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCCAGTAGATCGGATTCAG</pcr_primer_p1>
		<pcr_primer_p2>GCGATTTCAGTTTCTTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>385</pcr_amplicon_size>
		<canonical_amplicon>GATCCAGTAGATCGGATTCAGCCTTTTGACCGATGTCCAACAGCCGACCCACTTCCGACCGACCACCGATTCAGCCGACCGATCGCCGATTAATCTAACCGACCGATCGCCGACCAATCTGACCGACCGATCGCCGACCAATCTGACCGAGCGCCGACCGACCGCGCTAACCGACCAGCGATCTTGCCGATCCTGCGGACCTGCCACCGAATCAGCCGATTAAGCTGAGTGATCGGCCGGCGCTTTGGCTTTCATTCCGGTCGGTCAAAAATCAGCTCTGCGATCGGTCGACGGTCCGTCAGCGGTCGAAATGTTTTGACCGACCGAAACGACATTTTTTGGCACCAAAAGTAAAATTTCGAGCTCAAAAAGAAACTGAAATCGC</canonical_amplicon>
		<polymorphic_amplicon>GATCCAGTAGATCGGATTCAGCCTTTTGACCGATGTCCAACAGCCGACCCACTTCCGACCGACCACCGATTCAGCCGACCGATCGCCGATTAATCTAACCGACCGATCGCCGACCAATCTGACCGACCGATCGCCGACCAATCTGACCGAGCGCCGACCGACCGCGCTAACCGACCAGCGATCTTGCCGATCCTGCGGACCTGCCACCGAATCAGCCGATTAAGCTGAGTGATCGGCCGGCGCTTTGGCTTTCATTCCGGTCGGTCAAAAATCAGCTYTGCGATCGGTCGACGGTCCGTCAGCGGTCGAAATGTTTTGACCGACCGAAACGACATTTTTTGGCACCAAAAGTAAAATTTCGAGCTCAAAAAGAAACTGAAATCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31890</snp_id>
        <super_contig>c006700737.Contig3</super_contig>
        <contig_pos>334361</contig_pos>
        <strand>+</strand>
        <context>CAGCTYTGCG[A/G]TCGGTCGACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGGCCGGCGCTTTGGCTTTCATTCCGGTCGGTCAAAAATCAGCTCTGCG</left_flank>
        <right_flank>TCGGTCGACGGTCCGTCAGCGGTCGAAATGTTTTGACCGACCGAAACGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAAGCAGCTGAACAATAGTCGACCCAGCCGAAGGACCGTCGACCAACCGCCGATCACGCCGACCGCCAATCAAGTCAACCGACCGCCGATTCAGCCAACTACTTTTCCAGCCGGCCGGCCACCGACCGACCGCCGATCCGGTCGACCGACCACAGATACAGGTGACCGATAGTTGCTAACCGCCGACCGACCGGCGATCCAGCTGATCGATCGCCGATCCAGTAGATCGGATTCAGCCTTTTGACCGATGTCCAACAGCCGACCCACTTCCGACCGACCACCGATTCAGCCGACCGATCGCCGATTAATCTAACCGACCGATCGCCGACCAATCTGACCGACCGATCGCCGACCAATCTGACCGAGCGCCGACCGACCGCGCTAACCGACCAGCGATCTTGCCGATCCTGCGGACCTGCCACCGAATCAGCCGATTAAGCTGAGTGATCGGCCGGCGCTTTGGCTTTCATTCCGGTCGGTCAAAAATCAGCTCTGCGATCGGTCGACGGTCCGTCAGCGGTCGAAATGTTTTGACCGACCGAAACGACATTTTTTGGCACCAAAAGTAAAATTTCGAGCTCAAAAAGAAACTGAAATCGCCTCACCTTCTCATCCTCGTCATCTGTCGATTTGGCTCCCTCGGGCATTTCTCCATCATTCCTGTTCACTTTATGCACCACCCGATCCTCTTCCTCACTGCTCGTGCTCGTCGTTCGTCGCTTCTTCTTCTTCCCACCGCCCTTCTCCTTCTTTAACGTCTTCTTCTTTTTCTTTCCAATAGAATCAGAATCCTCCTTTGCCTTCTTCCAGCTCAACGTCGAGTCCTGCTGCTCCATGTATCGATGAAGGCCAACGACGCCGGGGATCTCCAGTGGGGATTGGATTTCTTTCTCTTTTTCGGCGGCTTCGGTTCGTTCGATGGGGTTGCCGAAGCGAGTTGGGCGCTTGGGGGCGGTTGCGGAGCCCTGGAAATTTGTTAATTAGGGTAATTAGTTAAT</canonical>
            <polymorphic>CAGAAGCAGCTGAACAATAGTCGACCCAGCCGAAGGACCGTCGACCAACCGCCGATCACGCCGACCGCCAATCAAGTCAACCGACCGCCGATTCAGCCAACTACTTTTCCAGCCGGCCGGCCACCGACCGACCGCCGATCCGGTCGACCGACCACAGATACAGGTGACCGATAGTTGCTAACCGCCGACCGACCGGCGATCCAGCTGATCGATCGCCGATCCAGTAGATCGGATTCAGCCTTTTGACCGATGTCCAACAGCCGACCCACTTCCGACCGACCACCGATTCAGCCGACCGATCGCCGATTAATCTAACCGACCGATCGCCGACCAATCTGACCGACCGATCGCCGACCAATCTGACCGAGCGCCGACCGACCGCGCTAACCGACCAGCGATCTTGCCGATCCTGCGGACCTGCCACCGAATCAGCCGATTAAGCTGAGTGATCGGCCGGCGCTTTGGCTTTCATTCCGGTCGGTCAAAAATCAGCTCTGCGRTCGGTCGACGGTCCGTCAGCGGTCGAAATGTTTTGACCGACCGAAACGACATTTTTTGGCACCAAAAGTAAAATTTCGAGCTCAAAAAGAAACTGAAATCGCCTCACCTTCTCATCCTCGTCATCTGTCGATTTGGCTCCCTCGGGCATTTCTCCATCATTCCTGTTCACTTTATGCACCACCCGATCCTCTTCCTCACTGCTCGTGCTCGTCGTTCGTCGCTTCTTCTTCTTCCCACCGCCCTTCTCCTTCTTTAACGTCTTCTTCTTTTTCTTTCCAATAGAATCAGAATCCTCCTTTGCCTTCTTCCAGCTCAACGTCGAGTCCTGCTGCTCCATGTATCGATGAAGGCCAACGACGCCGGGGATCTCCAGTGGGGATTGGATTTCTTTCTCTTTTTCGGCGGCTTCGGTTCGTTCGATGGGGTTGCCGAAGCGAGTTGGGCGCTTGGGGGCGGTTGCGGAGCCCTGGAAATTTGTTAATTAGGGTAATTAGTTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>186 181 135 83 71 61 53 51 51 42 24 24 9 9 9 7 4</canonical_bands>
                <polymorphic_bands>237 181 135 83 71 61 53 51 42 24 24 9 9 9 7 4</polymorphic_bands>
            </assay>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>459 75 65 63 41 32 27 24 23 20 20 20 20 20 18 18 12 11 4 4 4 4 4 4 4 4</canonical_bands>
                <polymorphic_bands>459 75 65 63 41 32 27 27 24 20 20 20 20 20 18 18 12 11 4 4 4 4 4 4 4</polymorphic_bands>
            </assay>
            <assay>
                <site>CGATCG</site>
                <isoschizomers>
                    <enzyme>BspCI</enzyme>
                    <enzyme>Ple19I</enzyme>
                    <enzyme>PvuI</enzyme>
                </isoschizomers>
                <canonical_bands>499 213 153 87 24 24</canonical_bands>
                <polymorphic_bands>652 213 87 24 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCCAGTAGATCGGATTCAG</pcr_primer_p1>
		<pcr_primer_p2>GCGATTTCAGTTTCTTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>385</pcr_amplicon_size>
		<canonical_amplicon>GATCCAGTAGATCGGATTCAGCCTTTTGACCGATGTCCAACAGCCGACCCACTTCCGACCGACCACCGATTCAGCCGACCGATCGCCGATTAATCTAACCGACCGATCGCCGACCAATCTGACCGACCGATCGCCGACCAATCTGACCGAGCGCCGACCGACCGCGCTAACCGACCAGCGATCTTGCCGATCCTGCGGACCTGCCACCGAATCAGCCGATTAAGCTGAGTGATCGGCCGGCGCTTTGGCTTTCATTCCGGTCGGTCAAAAATCAGCTCTGCGATCGGTCGACGGTCCGTCAGCGGTCGAAATGTTTTGACCGACCGAAACGACATTTTTTGGCACCAAAAGTAAAATTTCGAGCTCAAAAAGAAACTGAAATCGC</canonical_amplicon>
		<polymorphic_amplicon>GATCCAGTAGATCGGATTCAGCCTTTTGACCGATGTCCAACAGCCGACCCACTTCCGACCGACCACCGATTCAGCCGACCGATCGCCGATTAATCTAACCGACCGATCGCCGACCAATCTGACCGACCGATCGCCGACCAATCTGACCGAGCGCCGACCGACCGCGCTAACCGACCAGCGATCTTGCCGATCCTGCGGACCTGCCACCGAATCAGCCGATTAAGCTGAGTGATCGGCCGGCGCTTTGGCTTTCATTCCGGTCGGTCAAAAATCAGCTCTGCGRTCGGTCGACGGTCCGTCAGCGGTCGAAATGTTTTGACCGACCGAAACGACATTTTTTGGCACCAAAAGTAAAATTTCGAGCTCAAAAAGAAACTGAAATCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31892</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>54317</contig_pos>
        <strand>+</strand>
        <context>ATTTCAAAAA[A/T]WCTGATATAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATTCAAAATTCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAA</left_flank>
        <right_flank>TCTGATATAGTGGCCTGACTTTTGCAAGTTCCGAGACGGGAGAAAAAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATCCAAGAAATGCAAAAATCAATAATATCAAATAGGCCGTCGATGGTTTTGATAGTTTTTCCGACCAAGAACTCATGGCAAACTGAAAAGAAAAGACATTTCTGAAGTAAAATTGCTTAAAACCTGTATTAGAAGAGCCCCTTTAATAGAAGGGCCTCTTTAAAATGTGTTAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAATTCAAAATTCAAAAATTCGAAAATTCAAATTTCAAAATTTCAAAATTTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAGTTCAAAAATTCAAAAATTCCAAAATTCAAAAATTCAAAAATTCAAAAATCCAAAAATTCGAAAATTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCTGATATAGTGGCCTGACTTTTGCAAGTTCCGAGACGGGAGAAAAAATCTACAGTACCTTGAGTGATATAATTCTCAAAAGTGCCATTGCAACTGTCATCCACATGACCATAAAACGAGAAAATATTGTGAAGAGATTTGTAAATATTGAAGCAATACCAAATTCATAATAATGTAAGCCCGAACAATAATCATCGTCGTTATATTCAAGAATATACAAGATATCAGCAGCGAGAAGAGAAAATAATAGAATTAAATCGAAAAATGCAATCATTGCCATTATCAAAAAAACGGAATTCGATTTTAGCGATTTTTGTGTCAAAATCGATAAATGAATTGAATTTGTGATTAGGCCAAAAATCGATACAATTATATTCGCATATCGAGCGATTAGGTCGAAAAAGAATGAGAATTCGGCTTGCTCAGTAACTTGAATTAATTCTTGTTTTGTTAACTTCATTATTTTTTTTTTGGAAAAAAACTGAATTGGAAAAAATTGA</canonical>
            <polymorphic>AAATCCAAGAAATGCAAAAATCAATAATATCAAATAGGCCGTCGATGGTTTTGATAGTTTTTCCGACCAAGAACTCATGGCAAACTGAAAAGAAAAGACATTTCTGAAGTAAAATTGCTTAAAACCTGTATTAGAAGAGCCCCTTTAATAGAAGGGCCTCTTTAAAATGTGTTAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAATTCAAAATTCAAAAATTCGAAAATTCAAATTTCAAAATTTCAAAATTTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAGTTCAAAAATTCAAAAATTCCAAAATTCAAAAATTCAAAAATTCAAAAATCCAAAAATTCGAAAATTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAAWTCTGATATAGTGGCCTGACTTTTGCAAGTTCCGAGACGGGAGAAAAAATCTACAGTACCTTGAGTGATATAATTCTCAAAAGTGCCATTGCAACTGTCATCCACATGACCATAAAACGAGAAAATATTGTGAAGAGATTTGTAAATATTGAAGCAATACCAAATTCATAATAATGTAAGCCCGAACAATAATCATCGTCGTTATATTCAAGAATATACAAGATATCAGCAGCGAGAAGAGAAAATAATAGAATTAAATCGAAAAATGCAATCATTGCCATTATCAAAAAAACGGAATTCGATTTTAGCGATTTTTGTGTCAAAATCGATAAATGAATTGAATTTGTGATTAGGCCAAAAATCGATACAATTATATTCGCATATCGAGCGATTAGGTCGAAAAAGAATGAGAATTCGGCTTGCTCAGTAACTTGAATTAATTCTTGTTTTGTTAACTTCATTATTTTTTTTTTGGAAAAAAACTGAATTGGAAAAAATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>174 164 133 90 71 45 16 16 15 15 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7 7 7 7 6</canonical_bands>
                <polymorphic_bands>174 173 133 90 71 45 16 16 15 15 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7 7 7 7 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>112 91 89 73 62 47 44 43 40 28 23 16 16 15 15 10 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7 7 7 7 6 6 5 4</canonical_bands>
                <polymorphic_bands>112 91 89 82 62 47 44 43 40 28 23 16 16 15 15 10 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7 7 7 7 6 6 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAAAATTCAAAAATTCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CACAATATTTTCTCGTTTTATGG</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CGAAAATTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCTGATATAGTGGCCTGACTTTTGCAAGTTCCGAGACGGGAGAAAAAATCTACAGTACCTTGAGTGATATAATTCTCAAAAGTGCCATTGCAACTGTCATCCACATGACCATAAAACGAGAAAATATTGTG</canonical_amplicon>
		<polymorphic_amplicon>CGAAAATTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAAWTCTGATATAGTGGCCTGACTTTTGCAAGTTCCGAGACGGGAGAAAAAATCTACAGTACCTTGAGTGATATAATTCTCAAAAGTGCCATTGCAACTGTCATCCACATGACCATAAAACGAGAAAATATTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31893</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>54318</contig_pos>
        <strand>+</strand>
        <context>TTTCAAAAAW[A/T]CTGATATAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATTCAAAATTCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAAT</left_flank>
        <right_flank>CTGATATAGTGGCCTGACTTTTGCAAGTTCCGAGACGGGAGAAAAAATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCCAAGAAATGCAAAAATCAATAATATCAAATAGGCCGTCGATGGTTTTGATAGTTTTTCCGACCAAGAACTCATGGCAAACTGAAAAGAAAAGACATTTCTGAAGTAAAATTGCTTAAAACCTGTATTAGAAGAGCCCCTTTAATAGAAGGGCCTCTTTAAAATGTGTTAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAATTCAAAATTCAAAAATTCGAAAATTCAAATTTCAAAATTTCAAAATTTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAGTTCAAAAATTCAAAAATTCCAAAATTCAAAAATTCAAAAATTCAAAAATCCAAAAATTCGAAAATTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCTGATATAGTGGCCTGACTTTTGCAAGTTCCGAGACGGGAGAAAAAATCTACAGTACCTTGAGTGATATAATTCTCAAAAGTGCCATTGCAACTGTCATCCACATGACCATAAAACGAGAAAATATTGTGAAGAGATTTGTAAATATTGAAGCAATACCAAATTCATAATAATGTAAGCCCGAACAATAATCATCGTCGTTATATTCAAGAATATACAAGATATCAGCAGCGAGAAGAGAAAATAATAGAATTAAATCGAAAAATGCAATCATTGCCATTATCAAAAAAACGGAATTCGATTTTAGCGATTTTTGTGTCAAAATCGATAAATGAATTGAATTTGTGATTAGGCCAAAAATCGATACAATTATATTCGCATATCGAGCGATTAGGTCGAAAAAGAATGAGAATTCGGCTTGCTCAGTAACTTGAATTAATTCTTGTTTTGTTAACTTCATTATTTTTTTTTTGGAAAAAAACTGAATTGGAAAAAATTGAG</canonical>
            <polymorphic>AATCCAAGAAATGCAAAAATCAATAATATCAAATAGGCCGTCGATGGTTTTGATAGTTTTTCCGACCAAGAACTCATGGCAAACTGAAAAGAAAAGACATTTCTGAAGTAAAATTGCTTAAAACCTGTATTAGAAGAGCCCCTTTAATAGAAGGGCCTCTTTAAAATGTGTTAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAATTCAAAATTCAAAAATTCGAAAATTCAAATTTCAAAATTTCAAAATTTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAGTTCAAAAATTCAAAAATTCCAAAATTCAAAAATTCAAAAATTCAAAAATCCAAAAATTCGAAAATTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATWCTGATATAGTGGCCTGACTTTTGCAAGTTCCGAGACGGGAGAAAAAATCTACAGTACCTTGAGTGATATAATTCTCAAAAGTGCCATTGCAACTGTCATCCACATGACCATAAAACGAGAAAATATTGTGAAGAGATTTGTAAATATTGAAGCAATACCAAATTCATAATAATGTAAGCCCGAACAATAATCATCGTCGTTATATTCAAGAATATACAAGATATCAGCAGCGAGAAGAGAAAATAATAGAATTAAATCGAAAAATGCAATCATTGCCATTATCAAAAAAACGGAATTCGATTTTAGCGATTTTTGTGTCAAAATCGATAAATGAATTGAATTTGTGATTAGGCCAAAAATCGATACAATTATATTCGCATATCGAGCGATTAGGTCGAAAAAGAATGAGAATTCGGCTTGCTCAGTAACTTGAATTAATTCTTGTTTTGTTAACTTCATTATTTTTTTTTTGGAAAAAAACTGAATTGGAAAAAATTGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>173 164 133 91 71 45 16 16 15 15 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7 7 7 7 6</canonical_bands>
                <polymorphic_bands>173 173 133 91 71 45 16 16 15 15 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7 7 7 7 6</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>469 398 63 41 29</canonical_bands>
                <polymorphic_bands>469 427 63 41</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>111 91 89 73 62 47 44 43 40 28 23 16 16 15 15 10 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7 7 7 7 7 6 5 4</canonical_bands>
                <polymorphic_bands>111 91 89 82 62 47 44 43 40 28 23 16 16 15 15 10 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7 7 7 7 7 6 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAAAATTCAAAAATTCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CACAATATTTTCTCGTTTTATGG</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CGAAAATTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCTGATATAGTGGCCTGACTTTTGCAAGTTCCGAGACGGGAGAAAAAATCTACAGTACCTTGAGTGATATAATTCTCAAAAGTGCCATTGCAACTGTCATCCACATGACCATAAAACGAGAAAATATTGTG</canonical_amplicon>
		<polymorphic_amplicon>CGAAAATTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATWCTGATATAGTGGCCTGACTTTTGCAAGTTCCGAGACGGGAGAAAAAATCTACAGTACCTTGAGTGATATAATTCTCAAAAGTGCCATTGCAACTGTCATCCACATGACCATAAAACGAGAAAATATTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31894</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>54329</contig_pos>
        <strand>+</strand>
        <context>CTGATATAGT[G/T]GCCTGACTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCTGATATAGT</left_flank>
        <right_flank>GCCTGACTTTTGCAAGTTCCGAGACGGGAGAAAAAATCTACAGTACCTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCAAAAATCAATAATATCAAATAGGCCGTCGATGGTTTTGATAGTTTTTCCGACCAAGAACTCATGGCAAACTGAAAAGAAAAGACATTTCTGAAGTAAAATTGCTTAAAACCTGTATTAGAAGAGCCCCTTTAATAGAAGGGCCTCTTTAAAATGTGTTAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAATTCAAAATTCAAAAATTCGAAAATTCAAATTTCAAAATTTCAAAATTTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAGTTCAAAAATTCAAAAATTCCAAAATTCAAAAATTCAAAAATTCAAAAATCCAAAAATTCGAAAATTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCTGATATAGTGGCCTGACTTTTGCAAGTTCCGAGACGGGAGAAAAAATCTACAGTACCTTGAGTGATATAATTCTCAAAAGTGCCATTGCAACTGTCATCCACATGACCATAAAACGAGAAAATATTGTGAAGAGATTTGTAAATATTGAAGCAATACCAAATTCATAATAATGTAAGCCCGAACAATAATCATCGTCGTTATATTCAAGAATATACAAGATATCAGCAGCGAGAAGAGAAAATAATAGAATTAAATCGAAAAATGCAATCATTGCCATTATCAAAAAAACGGAATTCGATTTTAGCGATTTTTGTGTCAAAATCGATAAATGAATTGAATTTGTGATTAGGCCAAAAATCGATACAATTATATTCGCATATCGAGCGATTAGGTCGAAAAAGAATGAGAATTCGGCTTGCTCAGTAACTTGAATTAATTCTTGTTTTGTTAACTTCATTATTTTTTTTTTGGAAAAAAACTGAATTGGAAAAAATTGAGTTTCAATTTTT</canonical>
            <polymorphic>TGCAAAAATCAATAATATCAAATAGGCCGTCGATGGTTTTGATAGTTTTTCCGACCAAGAACTCATGGCAAACTGAAAAGAAAAGACATTTCTGAAGTAAAATTGCTTAAAACCTGTATTAGAAGAGCCCCTTTAATAGAAGGGCCTCTTTAAAATGTGTTAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAATTCAAAATTCAAAAATTCGAAAATTCAAATTTCAAAATTTCAAAATTTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAGTTCAAAAATTCAAAAATTCCAAAATTCAAAAATTCAAAAATTCAAAAATCCAAAAATTCGAAAATTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCTGATATAGTKGCCTGACTTTTGCAAGTTCCGAGACGGGAGAAAAAATCTACAGTACCTTGAGTGATATAATTCTCAAAAGTGCCATTGCAACTGTCATCCACATGACCATAAAACGAGAAAATATTGTGAAGAGATTTGTAAATATTGAAGCAATACCAAATTCATAATAATGTAAGCCCGAACAATAATCATCGTCGTTATATTCAAGAATATACAAGATATCAGCAGCGAGAAGAGAAAATAATAGAATTAAATCGAAAAATGCAATCATTGCCATTATCAAAAAAACGGAATTCGATTTTAGCGATTTTTGTGTCAAAATCGATAAATGAATTGAATTTGTGATTAGGCCAAAAATCGATACAATTATATTCGCATATCGAGCGATTAGGTCGAAAAAGAATGAGAATTCGGCTTGCTCAGTAACTTGAATTAATTCTTGTTTTGTTAACTTCATTATTTTTTTTTTGGAAAAAAACTGAATTGGAAAAAATTGAGTTTCAATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>357 340 159 118 26</canonical_bands>
                <polymorphic_bands>697 159 118 26</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>357 174 166 101 95 64 26 17</canonical_bands>
                <polymorphic_bands>523 174 101 95 64 26 17</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 340 159</canonical_bands>
                <polymorphic_bands>841 159</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>341 187 165 159 54 29 28 19 18</canonical_bands>
                <polymorphic_bands>395 187 165 159 29 28 19 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAAAATTCAAAAATTCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CACAATATTTTCTCGTTTTATGG</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CGAAAATTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCTGATATAGTGGCCTGACTTTTGCAAGTTCCGAGACGGGAGAAAAAATCTACAGTACCTTGAGTGATATAATTCTCAAAAGTGCCATTGCAACTGTCATCCACATGACCATAAAACGAGAAAATATTGTG</canonical_amplicon>
		<polymorphic_amplicon>CGAAAATTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCTGATATAGTKGCCTGACTTTTGCAAGTTCCGAGACGGGAGAAAAAATCTACAGTACCTTGAGTGATATAATTCTCAAAAGTGCCATTGCAACTGTCATCCACATGACCATAAAACGAGAAAATATTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31895</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>54493</contig_pos>
        <strand>+</strand>
        <context>CATAATAATG[C/T]AAGCCCRAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGTGAAGAGATTTGTAAATATTGAAGCAATACCAAATTCATAATAATG</left_flank>
        <right_flank>AAGCCCGAACAATAATCATCGTCGTTATATTCAAGAATATACAAGATATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAATTCAAAATTCAAAAATTCGAAAATTCAAATTTCAAAATTTCAAAATTTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAGTTCAAAAATTCAAAAATTCCAAAATTCAAAAATTCAAAAATTCAAAAATCCAAAAATTCGAAAATTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCTGATATAGTGGCCTGACTTTTGCAAGTTCCGAGACGGGAGAAAAAATCTACAGTACCTTGAGTGATATAATTCTCAAAAGTGCCATTGCAACTGTCATCCACATGACCATAAAACGAGAAAATATTGTGAAGAGATTTGTAAATATTGAAGCAATACCAAATTCATAATAATGTAAGCCCGAACAATAATCATCGTCGTTATATTCAAGAATATACAAGATATCAGCAGCGAGAAGAGAAAATAATAGAATTAAATCGAAAAATGCAATCATTGCCATTATCAAAAAAACGGAATTCGATTTTAGCGATTTTTGTGTCAAAATCGATAAATGAATTGAATTTGTGATTAGGCCAAAAATCGATACAATTATATTCGCATATCGAGCGATTAGGTCGAAAAAGAATGAGAATTCGGCTTGCTCAGTAACTTGAATTAATTCTTGTTTTGTTAACTTCATTATTTTTTTTTTGGAAAAAAACTGAATTGGAAAAAATTGAGTTTCAATTTTTGAAAATTATTTTTTCGGATCTTTGGGTTTTTAGAAAATTGGGGGGAAAATAAAATAGGTGTTAGAAAATTGGAAATATTGGAAAACCTATGATTAGAATTTCGGCCAACGCCCACAATAAGGTTTATTCATAATTTGAGGCTTTGGAAAAGAAAATCACATCAC</canonical>
            <polymorphic>TTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAATTCAAAATTCAAAAATTCGAAAATTCAAATTTCAAAATTTCAAAATTTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAGTTCAAAAATTCAAAAATTCCAAAATTCAAAAATTCAAAAATTCAAAAATCCAAAAATTCGAAAATTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCTGATATAGTGGCCTGACTTTTGCAAGTTCCGAGACGGGAGAAAAAATCTACAGTACCTTGAGTGATATAATTCTCAAAAGTGCCATTGCAACTGTCATCCACATGACCATAAAACGAGAAAATATTGTGAAGAGATTTGTAAATATTGAAGCAATACCAAATTCATAATAATGYAAGCCCGAACAATAATCATCGTCGTTATATTCAAGAATATACAAGATATCAGCAGCGAGAAGAGAAAATAATAGAATTAAATCGAAAAATGCAATCATTGCCATTATCAAAAAAACGGAATTCGATTTTAGCGATTTTTGTGTCAAAATCGATAAATGAATTGAATTTGTGATTAGGCCAAAAATCGATACAATTATATTCGCATATCGAGCGATTAGGTCGAAAAAGAATGAGAATTCGGCTTGCTCAGTAACTTGAATTAATTCTTGTTTTGTTAACTTCATTATTTTTTTTTTGGAAAAAAACTGAATTGGAAAAAATTGAGTTTCAATTTTTGAAAATTATTTTTTCGGATCTTTGGGTTTTTAGAAAATTGGGGGGAAAATAAAATAGGTGTTAGAAAATTGGAAATATTGGAAAACCTATGATTAGAATTTCGGCCAACGCCCACAATAAGGTTTATTCATAATTTGAGGCTTTGGAAAAGAAAATCACATCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTGTCATCCACATGACCATA</pcr_primer_p1>
		<pcr_primer_p2>ATTCAATTCATTTATCGATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTGTCATCCACATGACCATAAAACGAGAAAATATTGTGAAGAGATTTGTAAATATTGAAGCAATACCAAATTCATAATAATGTAAGCCCGAACAATAATCATCGTCGTTATATTCAAGAATATACAAGATATCAGCAGCGAGAAGAGAAAATAATAGAATTAAATCGAAAAATGCAATCATTGCCATTATCAAAAAAACGGAATTCGATTTTAGCGATTTTTGTGTCAAAATCGATAAATGAATTGAAT</canonical_amplicon>
		<polymorphic_amplicon>ACTGTCATCCACATGACCATAAAACGAGAAAATATTGTGAAGAGATTTGTAAATATTGAAGCAATACCAAATTCATAATAATGYAAGCCCGAACAATAATCATCGTCGTTATATTCAAGAATATACAAGATATCAGCAGCGAGAAGAGAAAATAATAGAATTAAATCGAAAAATGCAATCATTGCCATTATCAAAAAAACGGAATTCGATTTTAGCGATTTTTGTGTCAAAATCGATAAATGAATTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31896</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>54562</contig_pos>
        <strand>+</strand>
        <context>GAAGAGAAAA[C/T]AATAGAATTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGTCGTTATATTCAAGAATATACAAGATATCAGCAGCGAGAAGAGAAAA</left_flank>
        <right_flank>AATAGAATTAAATCGAAAAATGCAATCATTGCCATTATCAAAAAAACGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCAAAATTCAAAAATTCGAAAATTCAAATTTCAAAATTTCAAAATTTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAGTTCAAAAATTCAAAAATTCCAAAATTCAAAAATTCAAAAATTCAAAAATCCAAAAATTCGAAAATTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCTGATATAGTGGCCTGACTTTTGCAAGTTCCGAGACGGGAGAAAAAATCTACAGTACCTTGAGTGATATAATTCTCAAAAGTGCCATTGCAACTGTCATCCACATGACCATAAAACGAGAAAATATTGTGAAGAGATTTGTAAATATTGAAGCAATACCAAATTCATAATAATGTAAGCCCGAACAATAATCATCGTCGTTATATTCAAGAATATACAAGATATCAGCAGCGAGAAGAGAAAATAATAGAATTAAATCGAAAAATGCAATCATTGCCATTATCAAAAAAACGGAATTCGATTTTAGCGATTTTTGTGTCAAAATCGATAAATGAATTGAATTTGTGATTAGGCCAAAAATCGATACAATTATATTCGCATATCGAGCGATTAGGTCGAAAAAGAATGAGAATTCGGCTTGCTCAGTAACTTGAATTAATTCTTGTTTTGTTAACTTCATTATTTTTTTTTTGGAAAAAAACTGAATTGGAAAAAATTGAGTTTCAATTTTTGAAAATTATTTTTTCGGATCTTTGGGTTTTTAGAAAATTGGGGGGAAAATAAAATAGGTGTTAGAAAATTGGAAATATTGGAAAACCTATGATTAGAATTTCGGCCAACGCCCACAATAAGGTTTATTCATAATTTGAGGCTTTGGAAAAGAAAATCACATCACTTTATTTGTTTTCAGAAAAACTCAAACAATTATTTCATATTGTCGAATTTTGGTTGGGCAACGGGGCTC</canonical>
            <polymorphic>AATTCAAAATTCAAAAATTCGAAAATTCAAATTTCAAAATTTCAAAATTTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAGTTCAAAAATTCAAAAATTCCAAAATTCAAAAATTCAAAAATTCAAAAATCCAAAAATTCGAAAATTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAACATCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCAAAATTCAAAATTTCAAAAATTCTGATATAGTGGCCTGACTTTTGCAAGTTCCGAGACGGGAGAAAAAATCTACAGTACCTTGAGTGATATAATTCTCAAAAGTGCCATTGCAACTGTCATCCACATGACCATAAAACGAGAAAATATTGTGAAGAGATTTGTAAATATTGAAGCAATACCAAATTCATAATAATGTAAGCCCGAACAATAATCATCGTCGTTATATTCAAGAATATACAAGATATCAGCAGCGAGAAGAGAAAAYAATAGAATTAAATCGAAAAATGCAATCATTGCCATTATCAAAAAAACGGAATTCGATTTTAGCGATTTTTGTGTCAAAATCGATAAATGAATTGAATTTGTGATTAGGCCAAAAATCGATACAATTATATTCGCATATCGAGCGATTAGGTCGAAAAAGAATGAGAATTCGGCTTGCTCAGTAACTTGAATTAATTCTTGTTTTGTTAACTTCATTATTTTTTTTTTGGAAAAAAACTGAATTGGAAAAAATTGAGTTTCAATTTTTGAAAATTATTTTTTCGGATCTTTGGGTTTTTAGAAAATTGGGGGGAAAATAAAATAGGTGTTAGAAAATTGGAAATATTGGAAAACCTATGATTAGAATTTCGGCCAACGCCCACAATAAGGTTTATTCATAATTTGAGGCTTTGGAAAAGAAAATCACATCACTTTATTTGTTTTCAGAAAAACTCAAACAATTATTTCATATTGTCGAATTTTGGTTGGGCAACGGGGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTGTCATCCACATGACCATA</pcr_primer_p1>
		<pcr_primer_p2>ATTCAATTCATTTATCGATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTGTCATCCACATGACCATAAAACGAGAAAATATTGTGAAGAGATTTGTAAATATTGAAGCAATACCAAATTCATAATAATGTAAGCCCGAACAATAATCATCGTCGTTATATTCAAGAATATACAAGATATCAGCAGCGAGAAGAGAAAATAATAGAATTAAATCGAAAAATGCAATCATTGCCATTATCAAAAAAACGGAATTCGATTTTAGCGATTTTTGTGTCAAAATCGATAAATGAATTGAAT</canonical_amplicon>
		<polymorphic_amplicon>ACTGTCATCCACATGACCATAAAACGAGAAAATATTGTGAAGAGATTTGTAAATATTGAAGCAATACCAAATTCATAATAATGTAAGCCCGAACAATAATCATCGTCGTTATATTCAAGAATATACAAGATATCAGCAGCGAGAAGAGAAAAYAATAGAATTAAATCGAAAAATGCAATCATTGCCATTATCAAAAAAACGGAATTCGATTTTAGCGATTTTTGTGTCAAAATCGATAAATGAATTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31897</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>72664</contig_pos>
        <strand></strand>
        <context>aaaaaatttc[T/A]cygtacacca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TATGTCAATCTACATGCATTTCTGTACAAAATGAAGCAATAAAAAATTTC</left_flank>
        <right_flank>CTGTACACCACCTTTAAGCAGTCGAACAAAATTGTAGACGCTTATTTTGT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTAAAGGTGGTGTGCGGTGAAAATTTTTATTGCTTCATTTTGTACAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAAATCCTTCATTGAGAAAAACGCATCGAAAAATACGCTAAAAGCCCTTAGGGACGAGCTTTTTTTCTAGGCCGCCCGGTGAGTAAAAGCGCGCGAATTCAAACTTTTGAAATTTTTCCGCTCGTTTTCACTTTTTTCGGTTTTTTCAAGAGNNNNNNNNNNAATTTTTCTTCCAGATACATCGGAAAATTTGAAAAAAAACAGTGAAAACGAGCGAAAAATTTTGAAAAGTTTGAATTCGCGCGCTTTTACTCACCGGGCGGCCTAGAAAAAAACCTCGTCCCTAAGGGCTTTCAGCGTATTTTTCGATGCGTTTTTCTCGATGAAGGAATTTTTTTTGAATTTTTTCTTTATTTTTATGTCAATCTACATGCATTTCTGTACAAAATGAAGCAATAAAAAATTTCTCTGTACACCACCTTTAAGCAGTCGAACAAAATTGTAGACGCTTATTTTGTCTAATTCCACTGTAACACTCGGTATCATCAAGCGAGATGGGTCCCAAAACACTTTATCCGGACAGGTGTTGTGGATTTTAACTATTTCCGCATTTTTGAGCGATGTGATTCCATTGAGTTTATCAGTAAACGCCTCATCGGGCAAATCATCTGATTTAATATCGATTTCCTTGATCGATTGACATAAATTCAGAATATTATTCACTGGAGCCGTTTCGATTCTAGCAGGATGAAGAAAAACAGTGTTCACATGAATTTCGATGCGGAGATTTTCGAATTTTTCGAATAATTTTTGAGCAAAAACATTATCGATTTCTCCGGCGATCGTTAGATTATGAAGTTTGCAGCATCCCAGAATAGCTAGAAGTTTCGTCAAATCTTCTACTGCATATTTTCAGAAAATATATTTTCAGAAAAAAGAAGTATGTTTTCAGAAAAAGCTTTTTATGG</canonical>
            <polymorphic>CTTAAAGGTGGTGTGCGGTGAAAATTTTTATTGCTTCATTTTGTACAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAAATCCTTCATTGAGAAAAACGCATCGAAAAATACGCTAAAAGCCCTTAGGGACGAGCTTTTTTTCTAGGCCGCCCGGTGAGTAAAAGCGCGCGAATTCAAACTTTTGAAATTTTTCCGCTCGTTTTCACTTTTTTCGGTTTTTTCAAGAGNNNNNNNNNNAATTTTTCTTCCAGATACATCGGAAAATTTGAAAAAAAACAGTGAAAACGAGCGAAAAATTTTGAAAAGTTTGAATTCGCGCGCTTTTACTCACCGGGCGGCCTAGAAAAAAACCTCGTCCCTAAGGGCTTTCAGCGTATTTTTCGATGCGTTTTTCTCGATGAAGGAATTTTTTTTGAATTTTTTCTTTATTTTTATGTCAATCTACATGCATTTCTGTACAAAATGAAGCAATAAAAAATTTCWCTGTACACCACCTTTAAGCAGTCGAACAAAATTGTAGACGCTTATTTTGTCTAATTCCACTGTAACACTCGGTATCATCAAGCGAGATGGGTCCCAAAACACTTTATCCGGACAGGTGTTGTGGATTTTAACTATTTCCGCATTTTTGAGCGATGTGATTCCATTGAGTTTATCAGTAAACGCCTCATCGGGCAAATCATCTGATTTAATATCGATTTCCTTGATCGATTGACATAAATTCAGAATATTATTCACTGGAGCCGTTTCGATTCTAGCAGGATGAAGAAAAACAGTGTTCACATGAATTTCGATGCGGAGATTTTCGAATTTTTCGAATAATTTTTGAGCAAAAACATTATCGATTTCTCCGGCGATCGTTAGATTATGAAGTTTGCAGCATCCCAGAATAGCTAGAAGTTTCGTCAAATCTTCTACTGCATATTTTCAGAAAATATATTTTCAGAAAAAAGAAGTATGTTTTCAGAAAAAGCTTTTTATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCGAAATTCAAATTTTCTA</pcr_primer_p1>
		<pcr_primer_p2>ATTAGACAAAATAAGCGTCTACAA</pcr_primer_p2>
		<pcr_amplicon_size>577</pcr_amplicon_size>
		<canonical_amplicon>CTCTGTACACCACCTTTAAGCAGTCGAACAAAATTGTAGACGCTTATTTTGTCTAAT</canonical_amplicon>
		<polymorphic_amplicon>CWCTGTACACCACCTTTAAGCAGTCGAACAAAATTGTAGACGCTTATTTTGTCTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31898</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>72666</contig_pos>
        <strand></strand>
        <context>aaaatttcwc[T/C]gtacaccacc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGTCAATCTACATGCATTTCTGTACAAAATGAAGCAATAAAAAATTTCTC</left_flank>
        <right_flank>GTACACCACCTTTAAGCAGTCGAACAAAATTGTAGACGCTTATTTTGTCT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAGGTGGTGTGCGGTGAAAATTTTTATTGCTTCATTTTGTACAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAAATCCTTCATTGAGAAAAACGCATCGAAAAATACGCTAAAAGCCCTTAGGGACGAGCTTTTTTTCTAGGCCGCCCGGTGAGTAAAAGCGCGCGAATTCAAACTTTTGAAATTTTTCCGCTCGTTTTCACTTTTTTCGGTTTTTTCAAGAGNNNNNNNNNNAATTTTTCTTCCAGATACATCGGAAAATTTGAAAAAAAACAGTGAAAACGAGCGAAAAATTTTGAAAAGTTTGAATTCGCGCGCTTTTACTCACCGGGCGGCCTAGAAAAAAACCTCGTCCCTAAGGGCTTTCAGCGTATTTTTCGATGCGTTTTTCTCGATGAAGGAATTTTTTTTGAATTTTTTCTTTATTTTTATGTCAATCTACATGCATTTCTGTACAAAATGAAGCAATAAAAAATTTCTCTGTACACCACCTTTAAGCAGTCGAACAAAATTGTAGACGCTTATTTTGTCTAATTCCACTGTAACACTCGGTATCATCAAGCGAGATGGGTCCCAAAACACTTTATCCGGACAGGTGTTGTGGATTTTAACTATTTCCGCATTTTTGAGCGATGTGATTCCATTGAGTTTATCAGTAAACGCCTCATCGGGCAAATCATCTGATTTAATATCGATTTCCTTGATCGATTGACATAAATTCAGAATATTATTCACTGGAGCCGTTTCGATTCTAGCAGGATGAAGAAAAACAGTGTTCACATGAATTTCGATGCGGAGATTTTCGAATTTTTCGAATAATTTTTGAGCAAAAACATTATCGATTTCTCCGGCGATCGTTAGATTATGAAGTTTGCAGCATCCCAGAATAGCTAGAAGTTTCGTCAAATCTTCTACTGCATATTTTCAGAAAATATATTTTCAGAAAAAAGAAGTATGTTTTCAGAAAAAGCTTTTTATGGCG</canonical>
            <polymorphic>TAAAGGTGGTGTGCGGTGAAAATTTTTATTGCTTCATTTTGTACAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAAATCCTTCATTGAGAAAAACGCATCGAAAAATACGCTAAAAGCCCTTAGGGACGAGCTTTTTTTCTAGGCCGCCCGGTGAGTAAAAGCGCGCGAATTCAAACTTTTGAAATTTTTCCGCTCGTTTTCACTTTTTTCGGTTTTTTCAAGAGNNNNNNNNNNAATTTTTCTTCCAGATACATCGGAAAATTTGAAAAAAAACAGTGAAAACGAGCGAAAAATTTTGAAAAGTTTGAATTCGCGCGCTTTTACTCACCGGGCGGCCTAGAAAAAAACCTCGTCCCTAAGGGCTTTCAGCGTATTTTTCGATGCGTTTTTCTCGATGAAGGAATTTTTTTTGAATTTTTTCTTTATTTTTATGTCAATCTACATGCATTTCTGTACAAAATGAAGCAATAAAAAATTTCTCYGTACACCACCTTTAAGCAGTCGAACAAAATTGTAGACGCTTATTTTGTCTAATTCCACTGTAACACTCGGTATCATCAAGCGAGATGGGTCCCAAAACACTTTATCCGGACAGGTGTTGTGGATTTTAACTATTTCCGCATTTTTGAGCGATGTGATTCCATTGAGTTTATCAGTAAACGCCTCATCGGGCAAATCATCTGATTTAATATCGATTTCCTTGATCGATTGACATAAATTCAGAATATTATTCACTGGAGCCGTTTCGATTCTAGCAGGATGAAGAAAAACAGTGTTCACATGAATTTCGATGCGGAGATTTTCGAATTTTTCGAATAATTTTTGAGCAAAAACATTATCGATTTCTCCGGCGATCGTTAGATTATGAAGTTTGCAGCATCCCAGAATAGCTAGAAGTTTCGTCAAATCTTCTACTGCATATTTTCAGAAAATATATTTTCAGAAAAAAGAAGTATGTTTTCAGAAAAAGCTTTTTATGGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGTACA</site>
                <isoschizomers>
                    <enzyme>AauI</enzyme>
                    <enzyme>Bsp1407I</enzyme>
                    <enzyme>BsrGI</enzyme>
                    <enzyme>SspBI</enzyme>
                </isoschizomers>
                <canonical_bands>500 430 40 30</canonical_bands>
                <polymorphic_bands>530 430 40</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 430 40 30</canonical_bands>
                <polymorphic_bands>530 430 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGCGAAATTCAAATTTTCTA</pcr_primer_p1>
		<pcr_primer_p2>GGAATTAGACAAAATAAGCGTCTA</pcr_primer_p2>
		<pcr_amplicon_size>580</pcr_amplicon_size>
		<canonical_amplicon>CTGTACACCACCTTTAAGCAGTCGAACAAAATTGTAGACGCTTATTTTGTCTAATTCC</canonical_amplicon>
		<polymorphic_amplicon>CYGTACACCACCTTTAAGCAGTCGAACAAAATTGTAGACGCTTATTTTGTCTAATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31899</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>72794</contig_pos>
        <strand>+</strand>
        <context>TGTGGATTTT[A/T]ACTATTTCCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGCGAGATGGGTCCCAAAACACTTTATCCGGACAGGTGTTGTGGATTTT</left_flank>
        <right_flank>ACTATTTCCGCATTTTTGAGCGATGTGATTCCATTGAGTTTATCAGTAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAAGCCCTTAGGGACGAGCTTTTTTTCTAGGCCGCCCGGTGAGTAAAAGCGCGCGAATTCAAACTTTTGAAATTTTTCCGCTCGTTTTCACTTTTTTCGGTTTTTTCAAGAGNNNNNNNNNNAATTTTTCTTCCAGATACATCGGAAAATTTGAAAAAAAACAGTGAAAACGAGCGAAAAATTTTGAAAAGTTTGAATTCGCGCGCTTTTACTCACCGGGCGGCCTAGAAAAAAACCTCGTCCCTAAGGGCTTTCAGCGTATTTTTCGATGCGTTTTTCTCGATGAAGGAATTTTTTTTGAATTTTTTCTTTATTTTTATGTCAATCTACATGCATTTCTGTACAAAATGAAGCAATAAAAAATTTCTCTGTACACCACCTTTAAGCAGTCGAACAAAATTGTAGACGCTTATTTTGTCTAATTCCACTGTAACACTCGGTATCATCAAGCGAGATGGGTCCCAAAACACTTTATCCGGACAGGTGTTGTGGATTTTAACTATTTCCGCATTTTTGAGCGATGTGATTCCATTGAGTTTATCAGTAAACGCCTCATCGGGCAAATCATCTGATTTAATATCGATTTCCTTGATCGATTGACATAAATTCAGAATATTATTCACTGGAGCCGTTTCGATTCTAGCAGGATGAAGAAAAACAGTGTTCACATGAATTTCGATGCGGAGATTTTCGAATTTTTCGAATAATTTTTGAGCAAAAACATTATCGATTTCTCCGGCGATCGTTAGATTATGAAGTTTGCAGCATCCCAGAATAGCTAGAAGTTTCGTCAAATCTTCTACTGCATATTTTCAGAAAATATATTTTCAGAAAAAAGAAGTATGTTTTCAGAAAAAGCTTTTTATGGCGCTTTTCAAAATTTCTAAAAATTGAAAAAGAAGTCACATTTGTATTTAAAATGTTCCCCATGAAGAACTTTTTCTAAAAATATATTTCTCAAAAAATTCGGCCCACTTTGAGCTGAGTTGTACCGCTTA</canonical>
            <polymorphic>TAAAAGCCCTTAGGGACGAGCTTTTTTTCTAGGCCGCCCGGTGAGTAAAAGCGCGCGAATTCAAACTTTTGAAATTTTTCCGCTCGTTTTCACTTTTTTCGGTTTTTTCAAGAGNNNNNNNNNNAATTTTTCTTCCAGATACATCGGAAAATTTGAAAAAAAACAGTGAAAACGAGCGAAAAATTTTGAAAAGTTTGAATTCGCGCGCTTTTACTCACCGGGCGGCCTAGAAAAAAACCTCGTCCCTAAGGGCTTTCAGCGTATTTTTCGATGCGTTTTTCTCGATGAAGGAATTTTTTTTGAATTTTTTCTTTATTTTTATGTCAATCTACATGCATTTCTGTACAAAATGAAGCAATAAAAAATTTCTCTGTACACCACCTTTAAGCAGTCGAACAAAATTGTAGACGCTTATTTTGTCTAATTCCACTGTAACACTCGGTATCATCAAGCGAGATGGGTCCCAAAACACTTTATCCGGACAGGTGTTGTGGATTTTWACTATTTCCGCATTTTTGAGCGATGTGATTCCATTGAGTTTATCAGTAAACGCCTCATCGGGCAAATCATCTGATTTAATATCGATTTCCTTGATCGATTGACATAAATTCAGAATATTATTCACTGGAGCCGTTTCGATTCTAGCAGGATGAAGAAAAACAGTGTTCACATGAATTTCGATGCGGAGATTTTCGAATTTTTCGAATAATTTTTGAGCAAAAACATTATCGATTTCTCCGGCGATCGTTAGATTATGAAGTTTGCAGCATCCCAGAATAGCTAGAAGTTTCGTCAAATCTTCTACTGCATATTTTCAGAAAATATATTTTCAGAAAAAAGAAGTATGTTTTCAGAAAAAGCTTTTTATGGCGCTTTTCAAAATTTCTAAAAATTGAAAAAGAAGTCACATTTGTATTTAAAATGTTCCCCATGAAGAACTTTTTCTAAAAATATATTTCTCAAAAAATTCGGCCCACTTTGAGCTGAGTTGTACCGCTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>384 341 114 83 78</canonical_bands>
                <polymorphic_bands>384 341 192 83</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTATTTTGTCTAATTCCACTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTTCATCCTGCTAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTTATTTTGTCTAATTCCACTGTAACACTCGGTATCATCAAGCGAGATGGGTCCCAAAACACTTTATCCGGACAGGTGTTGTGGATTTTAACTATTTCCGCATTTTTGAGCGATGTGATTCCATTGAGTTTATCAGTAAACGCCTCATCGGGCAAATCATCTGATTTAATATCGATTTCCTTGATCGATTGACATAAATTCAGAATATTATTCACTGGAGCCGTTTCGATTCTAGCAGGATGAAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GCTTATTTTGTCTAATTCCACTGTAACACTCGGTATCATCAAGCGAGATGGGTCCCAAAACACTTTATCCGGACAGGTGTTGTGGATTTTWACTATTTCCGCATTTTTGAGCGATGTGATTCCATTGAGTTTATCAGTAAACGCCTCATCGGGCAAATCATCTGATTTAATATCGATTTCCTTGATCGATTGACATAAATTCAGAATATTATTCACTGGAGCCGTTTCGATTCTAGCAGGATGAAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31900</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>73212</contig_pos>
        <strand></strand>
        <context>CATTTGTATT[T/C]AAAATGTTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGGCGCTTTTCAAAATTTCTAAAAATTGAAAAAGAAGTCACATTTGTATT</left_flank>
        <right_flank>AAAATGTTCCCCATGAAGAACTTTTTCTAAAAATATATTTCTCAAAAAAT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCTAATTCCACTGTAACACTCGGTATCATCAAGCGAGATGGGTCCCAAAACACTTTATCCGGACAGGTGTTGTGGATTTTAACTATTTCCGCATTTTTGAGCGATGTGATTCCATTGAGTTTATCAGTAAACGCCTCATCGGGCAAATCATCTGATTTAATATCGATTTCCTTGATCGATTGACATAAATTCAGAATATTATTCACTGGAGCCGTTTCGATTCTAGCAGGATGAAGAAAAACAGTGTTCACATGAATTTCGATGCGGAGATTTTCGAATTTTTCGAATAATTTTTGAGCAAAAACATTATCGATTTCTCCGGCGATCGTTAGATTATGAAGTTTGCAGCATCCCAGAATAGCTAGAAGTTTCGTCAAATCTTCTACTGCATATTTTCAGAAAATATATTTTCAGAAAAAAGAAGTATGTTTTCAGAAAAAGCTTTTTATGGCGCTTTTCAAAATTTCTAAAAATTGAAAAAGAAGTCACATTTGTATTTAAAATGTTCCCCATGAAGAACTTTTTCTAAAAATATATTTCTCAAAAAATTCGGCCCACTTTGAGCTGAGTTGTACCGCTTAGAAAGTTGGCGTTGAGAGACGCAGAGAGACGAGACGCTCTCGTTTCTCTGCGTCTCCCTCTCACCAGCTATCTTTAAGCGCCCGTAACTCAGCTCAATGTGAGCCGAATTTTTTGAAAAATAGATTTTTGGAATCAGCAACTTGTGGCAAACATTTCCAATGTAAGTTTGACATTTTTTTCAATTTTTTGAAAAAATTGAAAATTCTGAATTTTCATAAACTTGAATTATATGGCTTTAACAAAGCGTCCTGAATCAAAATATTCATTAAATATTCAAATTTCTAGACATTCTAGACTGAAAAACGCTCTTTTCATCTGCCGGATGAATCTGTGCGCCTTTAAAAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAGGCG</canonical>
            <polymorphic>GTCTAATTCCACTGTAACACTCGGTATCATCAAGCGAGATGGGTCCCAAAACACTTTATCCGGACAGGTGTTGTGGATTTTAACTATTTCCGCATTTTTGAGCGATGTGATTCCATTGAGTTTATCAGTAAACGCCTCATCGGGCAAATCATCTGATTTAATATCGATTTCCTTGATCGATTGACATAAATTCAGAATATTATTCACTGGAGCCGTTTCGATTCTAGCAGGATGAAGAAAAACAGTGTTCACATGAATTTCGATGCGGAGATTTTCGAATTTTTCGAATAATTTTTGAGCAAAAACATTATCGATTTCTCCGGCGATCGTTAGATTATGAAGTTTGCAGCATCCCAGAATAGCTAGAAGTTTCGTCAAATCTTCTACTGCATATTTTCAGAAAATATATTTTCAGAAAAAAGAAGTATGTTTTCAGAAAAAGCTTTTTATGGCGCTTTTCAAAATTTCTAAAAATTGAAAAAGAAGTCACATTTGTATTYAAAATGTTCCCCATGAAGAACTTTTTCTAAAAATATATTTCTCAAAAAATTCGGCCCACTTTGAGCTGAGTTGTACCGCTTAGAAAGTTGGCGTTGAGAGACGCAGAGAGACGAGACGCTCTCGTTTCTCTGCGTCTCCCTCTCACCAGCTATCTTTAAGCGCCCGTAACTCAGCTCAATGTGAGCCGAATTTTTTGAAAAATAGATTTTTGGAATCAGCAACTTGTGGCAAACATTTCCAATGTAAGTTTGACATTTTTTTCAATTTTTTGAAAAAATTGAAAATTCTGAATTTTCATAAACTTGAATTATATGGCTTTAACAAAGCGTCCTGAATCAAAATATTCATTAAATATTCAAATTTCTAGACATTCTAGACTGAAAAACGCTCTTTTCATCTGCCGGATGAATCTGTGCGCCTTTAAAAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAGGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 423 77</canonical_bands>
                <polymorphic_bands>923 77</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>341 163 157 80 78 78 73 30</canonical_bands>
                <polymorphic_bands>498 163 80 78 78 73 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTCAAATCTTCTACTGCATATT</pcr_primer_p1>
		<pcr_primer_p2>TGTTAAAGCCATATAATTCAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>452</pcr_amplicon_size>
		<canonical_amplicon>CGTCAAATCTTCTACTGCATATTTTCAGAAAATATATTTTCAGAAAAAAGAAGTATGTTTTCAGAAAAAGCTTTTTATGGCGCTTTTCAAAATTTCTAAAAATTGAAAAAGAAGTCACATTTGTATTTAAAATGTTCCCCATGAAGAACTTTTTCTAAAAATATATTTCTCAAAAAATTCGGCCCACTTTGAGCTGAGTTGTACCGCTTAGAAAGTTGGCGTTGAGAGACGCAGAGAGACGAGACGCTCTCGTTTCTCTGCGTCTCCCTCTCACCAGCTATCTTTAAGCGCCCGTAACTCAGCTCAATGTGAGCCGAATTTTTTGAAAAATAGATTTTTGGAATCAGCAACTTGTGGCAAACATTTCCAATGTAAGTTTGACATTTTTTTCAATTTTTTGAAAAAATTGAAAATTCTGAATTTTCATAAACTTGAATTATATGGCTTTAACA</canonical_amplicon>
		<polymorphic_amplicon>CGTCAAATCTTCTACTGCATATTTTCAGAAAATATATTTTCAGAAAAAAGAAGTATGTTTTCAGAAAAAGCTTTTTATGGCGCTTTTCAAAATTTCTAAAAATTGAAAAAGAAGTCACATTTGTATTYAAAATGTTCCCCATGAAGAACTTTTTCTAAAAATATATTTCTCAAAAAATTCGGCCCACTTTGAGCTGAGTTGTACCGCTTAGAAAGTTGGCGTTGAGAGACGCAGAGAGACGAGACGCTCTCGTTTCTCTGCGTCTCCCTCTCACCAGCTATCTTTAAGCGCCCGTAACTCAGCTCAATGTGAGCCGAATTTTTTGAAAAATAGATTTTTGGAATCAGCAACTTGTGGCAAACATTTCCAATGTAAGTTTGACATTTTTTTCAATTTTTTGAAAAAATTGAAAATTCTGAATTTTCATAAACTTGAATTATATGGCTTTAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31901</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>74996</contig_pos>
        <strand>+</strand>
        <context>GCAGTTTGGC[C/T]GATCTAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTAGTCTCATTTTGTAGATTTTAAGTTCTTCTACAATTTGCAGTTTGGC</left_flank>
        <right_flank>GATCTAAAATTATCAGACCTGAAGAAATCTAGGAAAAAGTCCGTTTTTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACTAAATTTGACAGATTTCATTCACAGGTAAAATGCGAACGGATCCGTTACGGACGCTCAGCGTTCGCGCGCGGTTGAAATAGGAACCGCATACGGACCGCACGCGACCCGTTTTCAGAAAACCACAGCACATTATTCCGTATTCCTCCGTATTCTGTCCGTTCGCGTACTCCGTATCCGATCCAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAGTAAATCAATATTTTAGAACCAATGTACCCTAAGAACTCGATGTACCCTCGATGTACCCTTTTTCGATGTACCCTTGGATCGTGGGCCCTCAAGGAATTAGCTGTCAGTGAGGATCAATGATGGGGAAAACATAAAGCTTTGCCCGCGAAGCTCAGGCGGTTTTCGGTTTTTAACTTTGTTCAAAGACAAGATACAGTACCCTACTTAGTCTCATTTTGTAGATTTTAAGTTCTTCTACAATTTGCAGTTTGGCCGATCTAAAATTATCAGACCTGAAGAAATCTAGGAAAAAGTCCGTTTTTGGTCTGTTTTAGATCAGTTTTCGGCCCATAGTTAGCCTGTTTTTTCGCCCGCTTTCGGTCCGTTTTTGGCCCGTTCTTGACCCGATTTTGGACCGTTTGTGGCATACTTCTAAACTGTTTTTGGTCCGTTTTTCGCCTGTTTTTGGCCGGTTTTTGATCTGTTTTTGGTTTATTTTTGACACAAAAGGTCAAAAGTGTGTCAAAGAGAGATAAAAAACGGATTAATTTCTTTGGATGTTAAAAAATTCGAAAAAAAATTTTAAAAAACCAAAAAATCAAGAGATCGAAAATCTGAAATTCGGAAATTCAGATATTCGAAACTTCAAAACTTCACTTATTGGTCCATTCTTCGTCCATTTTTGGTTTATTTGGTCCGTTTTCAGGGGTTTTAATATCTAATCGTATGTATGTGTCGTTTTTTTCTCATTTCCATATGCTAATCTCCCCTCCCC</canonical>
            <polymorphic>GACTAAATTTGACAGATTTCATTCACAGGTAAAATGCGAACGGATCCGTTACGGACGCTCAGCGTTCGCGCGCGGTTGAAATAGGAACCGCATACGGACCGCACGCGACCCGTTTTCAGAAAACCACAGCACATTATTCCGTATTCCTCCGTATTCTGTCCGTTCGCGTACTCCGTATCCGATCCAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAGTAAATCAATATTTTAGAACCAATGTACCCTAAGAACTCGATGTACCCTCGATGTACCCTTTTTCGATGTACCCTTGGATCGTGGGCCCTCAAGGAATTAGCTGTCAGTGAGGATCAATGATGGGGAAAACATAAAGCTTTGCCCGCGAAGCTCAGGCGGTTTTCGGTTTTTAACTTTGTTCAAAGACAAGATACAGTACCCTACTTAGTCTCATTTTGTAGATTTTAAGTTCTTCTACAATTTGCAGTTTGGCYGATCTAAAATTATCAGACCTGAAGAAATCTAGGAAAAAGTCCGTTTTTGGTCTGTTTTAGATCAGTTTTCGGCCCATAGTTAGCCTGTTTTTTCGCCCGCTTTCGGTCCGTTTTTGGCCCGTTCTTGACCCGATTTTGGACCGTTTGTGGCATACTTCTAAACTGTTTTTGGTCCGTTTTTCGCCTGTTTTTGGCCGGTTTTTGATCTGTTTTTGGTTTATTTTTGACACAAAAGGTCAAAAGTGTGTCAAAGAGAGATAAAAAACGGATTAATTTCTTTGGATGTTAAAAAATTCGAAAAAAAATTTTAAAAAACCAAAAAATCAAGAGATCGAAAATCTGAAATTCGGAAATTCAGATATTCGAAACTTCAAAACTTCACTTATTGGTCCATTCTTCGTCCATTTTTGGTTTATTTGGTCCGTTTTCAGGGGTTTTAATATCTAATCGTATGTATGTGTCGTTTTTTTCTCATTTCCATATGCTAATCTCCCCTCCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>331 306 167 77 74 45</canonical_bands>
                <polymorphic_bands>331 306 241 77 45</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>496 308 196</canonical_bands>
                <polymorphic_bands>692 308</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>331 306 102 77 74 36 34 15 14 11</canonical_bands>
                <polymorphic_bands>331 306 176 77 36 34 15 14 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATGATGGGGAAAACATAA</pcr_primer_p1>
		<pcr_primer_p2>ACACACTTTTGACCTTTTGTG</pcr_primer_p2>
		<pcr_amplicon_size>388</pcr_amplicon_size>
		<canonical_amplicon>CAATGATGGGGAAAACATAAAGCTTTGCCCGCGAAGCTCAGGCGGTTTTCGGTTTTTAACTTTGTTCAAAGACAAGATACAGTACCCTACTTAGTCTCATTTTGTAGATTTTAAGTTCTTCTACAATTTGCAGTTTGGCCGATCTAAAATTATCAGACCTGAAGAAATCTAGGAAAAAGTCCGTTTTTGGTCTGTTTTAGATCAGTTTTCGGCCCATAGTTAGCCTGTTTTTTCGCCCGCTTTCGGTCCGTTTTTGGCCCGTTCTTGACCCGATTTTGGACCGTTTGTGGCATACTTCTAAACTGTTTTTGGTCCGTTTTTCGCCTGTTTTTGGCCGGTTTTTGATCTGTTTTTGGTTTATTTTTGACACAAAAGGTCAAAAGTGTGT</canonical_amplicon>
		<polymorphic_amplicon>CAATGATGGGGAAAACATAAAGCTTTGCCCGCGAAGCTCAGGCGGTTTTCGGTTTTTAACTTTGTTCAAAGACAAGATACAGTACCCTACTTAGTCTCATTTTGTAGATTTTAAGTTCTTCTACAATTTGCAGTTTGGCYGATCTAAAATTATCAGACCTGAAGAAATCTAGGAAAAAGTCCGTTTTTGGTCTGTTTTAGATCAGTTTTCGGCCCATAGTTAGCCTGTTTTTTCGCCCGCTTTCGGTCCGTTTTTGGCCCGTTCTTGACCCGATTTTGGACCGTTTGTGGCATACTTCTAAACTGTTTTTGGTCCGTTTTTCGCCTGTTTTTGGCCGGTTTTTGATCTGTTTTTGGTTTATTTTTGACACAAAAGGTCAAAAGTGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31902</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>75025</contig_pos>
        <strand>+</strand>
        <context>CTGAAGAAAT[C/T]TAGGAAAAAg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTACAATTTGCAGTTTGGCCGATCTAAAATTATCAGACCTGAAGAAAT</left_flank>
        <right_flank>TAGGAAAAAGTCCGTTTTTGGTCTGTTTTAGATCAGTTTTCGGCCCATAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAATGCGAACGGATCCGTTACGGACGCTCAGCGTTCGCGCGCGGTTGAAATAGGAACCGCATACGGACCGCACGCGACCCGTTTTCAGAAAACCACAGCACATTATTCCGTATTCCTCCGTATTCTGTCCGTTCGCGTACTCCGTATCCGATCCAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAGTAAATCAATATTTTAGAACCAATGTACCCTAAGAACTCGATGTACCCTCGATGTACCCTTTTTCGATGTACCCTTGGATCGTGGGCCCTCAAGGAATTAGCTGTCAGTGAGGATCAATGATGGGGAAAACATAAAGCTTTGCCCGCGAAGCTCAGGCGGTTTTCGGTTTTTAACTTTGTTCAAAGACAAGATACAGTACCCTACTTAGTCTCATTTTGTAGATTTTAAGTTCTTCTACAATTTGCAGTTTGGCCGATCTAAAATTATCAGACCTGAAGAAATCTAGGAAAAAGTCCGTTTTTGGTCTGTTTTAGATCAGTTTTCGGCCCATAGTTAGCCTGTTTTTTCGCCCGCTTTCGGTCCGTTTTTGGCCCGTTCTTGACCCGATTTTGGACCGTTTGTGGCATACTTCTAAACTGTTTTTGGTCCGTTTTTCGCCTGTTTTTGGCCGGTTTTTGATCTGTTTTTGGTTTATTTTTGACACAAAAGGTCAAAAGTGTGTCAAAGAGAGATAAAAAACGGATTAATTTCTTTGGATGTTAAAAAATTCGAAAAAAAATTTTAAAAAACCAAAAAATCAAGAGATCGAAAATCTGAAATTCGGAAATTCAGATATTCGAAACTTCAAAACTTCACTTATTGGTCCATTCTTCGTCCATTTTTGGTTTATTTGGTCCGTTTTCAGGGGTTTTAATATCTAATCGTATGTATGTGTCGTTTTTTTCTCATTTCCATATGCTAATCTCCCCTCCCCTCCTACAGGTGACCCCTCATTTTTCCCCT</canonical>
            <polymorphic>TAAAATGCGAACGGATCCGTTACGGACGCTCAGCGTTCGCGCGCGGTTGAAATAGGAACCGCATACGGACCGCACGCGACCCGTTTTCAGAAAACCACAGCACATTATTCCGTATTCCTCCGTATTCTGTCCGTTCGCGTACTCCGTATCCGATCCAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAGTAAATCAATATTTTAGAACCAATGTACCCTAAGAACTCGATGTACCCTCGATGTACCCTTTTTCGATGTACCCTTGGATCGTGGGCCCTCAAGGAATTAGCTGTCAGTGAGGATCAATGATGGGGAAAACATAAAGCTTTGCCCGCGAAGCTCAGGCGGTTTTCGGTTTTTAACTTTGTTCAAAGACAAGATACAGTACCCTACTTAGTCTCATTTTGTAGATTTTAAGTTCTTCTACAATTTGCAGTTTGGCCGATCTAAAATTATCAGACCTGAAGAAATYTAGGAAAAAGTCCGTTTTTGGTCTGTTTTAGATCAGTTTTCGGCCCATAGTTAGCCTGTTTTTTCGCCCGCTTTCGGTCCGTTTTTGGCCCGTTCTTGACCCGATTTTGGACCGTTTGTGGCATACTTCTAAACTGTTTTTGGTCCGTTTTTCGCCTGTTTTTGGCCGGTTTTTGATCTGTTTTTGGTTTATTTTTGACACAAAAGGTCAAAAGTGTGTCAAAGAGAGATAAAAAACGGATTAATTTCTTTGGATGTTAAAAAATTCGAAAAAAAATTTTAAAAAACCAAAAAATCAAGAGATCGAAAATCTGAAATTCGGAAATTCAGATATTCGAAACTTCAAAACTTCACTTATTGGTCCATTCTTCGTCCATTTTTGGTTTATTTGGTCCGTTTTCAGGGGTTTTAATATCTAATCGTATGTATGTGTCGTTTTTTTCTCATTTCCATATGCTAATCTCCCCTCCCCTCCTACAGGTGACCCCTCATTTTTCCCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATGATGGGGAAAACATAA</pcr_primer_p1>
		<pcr_primer_p2>ACACACTTTTGACCTTTTGTG</pcr_primer_p2>
		<pcr_amplicon_size>388</pcr_amplicon_size>
		<canonical_amplicon>CAATGATGGGGAAAACATAAAGCTTTGCCCGCGAAGCTCAGGCGGTTTTCGGTTTTTAACTTTGTTCAAAGACAAGATACAGTACCCTACTTAGTCTCATTTTGTAGATTTTAAGTTCTTCTACAATTTGCAGTTTGGCCGATCTAAAATTATCAGACCTGAAGAAATCTAGGAAAAAGTCCGTTTTTGGTCTGTTTTAGATCAGTTTTCGGCCCATAGTTAGCCTGTTTTTTCGCCCGCTTTCGGTCCGTTTTTGGCCCGTTCTTGACCCGATTTTGGACCGTTTGTGGCATACTTCTAAACTGTTTTTGGTCCGTTTTTCGCCTGTTTTTGGCCGGTTTTTGATCTGTTTTTGGTTTATTTTTGACACAAAAGGTCAAAAGTGTGT</canonical_amplicon>
		<polymorphic_amplicon>CAATGATGGGGAAAACATAAAGCTTTGCCCGCGAAGCTCAGGCGGTTTTCGGTTTTTAACTTTGTTCAAAGACAAGATACAGTACCCTACTTAGTCTCATTTTGTAGATTTTAAGTTCTTCTACAATTTGCAGTTTGGCCGATCTAAAATTATCAGACCTGAAGAAATYTAGGAAAAAGTCCGTTTTTGGTCTGTTTTAGATCAGTTTTCGGCCCATAGTTAGCCTGTTTTTTCGCCCGCTTTCGGTCCGTTTTTGGCCCGTTCTTGACCCGATTTTGGACCGTTTGTGGCATACTTCTAAACTGTTTTTGGTCCGTTTTTCGCCTGTTTTTGGCCGGTTTTTGATCTGTTTTTGGTTTATTTTTGACACAAAAGGTCAAAAGTGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31903</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82492</contig_pos>
        <strand>+</strand>
        <context>tatGTGACAa[A/G]tttatactca</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAA</left_flank>
        <right_flank>TTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACAAAGCCTACTATGGCCTGAACGTTACCAATTGCATCATTGAGAAGAATACGGGAAATGGAGTGTTCGCAAATGATATTCGAGAGAGGACATCGCTGACTAATGTGACTTTGGATGAGAATCAGGGATACGCTGGTTTTTTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTAT</canonical>
            <polymorphic>AGACAAAGCCTACTATGGCCTGAACGTTACCAATTGCATCATTGAGAAGAATACGGGAAATGGAGTGTTCGCAAATGATATTCGAGAGAGGACATCGCTGACTAATGTGACTTTGGATGAGAATCAGGGATACGCTGGTTTTTTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAARTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>TTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>TTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAARTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31904</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82539</contig_pos>
        <strand>+</strand>
        <context>caaaaaatta[A/G]mtttcwagmr</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTA</left_flank>
        <right_flank>ATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAATACGGGAAATGGAGTGTTCGCAAATGATATTCGAGAGAGGACATCGCTGACTAATGTGACTTTGGATGAGAATCAGGGATACGCTGGTTTTTTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAA</canonical>
            <polymorphic>AGAATACGGGAAATGGAGTGTTCGCAAATGATATTCGAGAGAGGACATCGCTGACTAATGTGACTTTGGATGAGAATCAGGGATACGCTGGTTTTTTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTARATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>246 199 150 116 77 69 31 27 25 18 17 11 7 7</canonical_bands>
                <polymorphic_bands>246 219 199 116 77 31 27 25 18 17 11 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>313 290 210 125 59 3</canonical_bands>
                <polymorphic_bands>335 313 290 59 3</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>150 116 103 64 62 58 57 53 44 44 36 31 30 25 21 19 18 16 11 9 8 7 7 6 5</canonical_bands>
                <polymorphic_bands>155 116 103 64 62 58 57 53 44 44 36 31 30 25 21 19 18 16 11 9 8 7 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>TTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>TTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTARATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31905</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82540</contig_pos>
        <strand>+</strand>
        <context>aaaaaattar[A/C]tttcwagmrt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAA</left_flank>
        <right_flank>TTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATACGGGAAATGGAGTGTTCGCAAATGATATTCGAGAGAGGACATCGCTGACTAATGTGACTTTGGATGAGAATCAGGGATACGCTGGTTTTTTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAA</canonical>
            <polymorphic>GAATACGGGAAATGGAGTGTTCGCAAATGATATTCGAGAGAGGACATCGCTGACTAATGTGACTTTGGATGAGAATCAGGGATACGCTGGTTTTTTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAMTTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>247 199 150 115 77 69 31 27 25 18 17 11 7 7</canonical_bands>
                <polymorphic_bands>247 219 199 115 77 31 27 25 18 17 11 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>150 115 103 64 62 58 58 53 44 44 36 31 30 25 21 19 18 16 11 9 8 7 7 6 5</canonical_bands>
                <polymorphic_bands>155 115 103 64 62 58 58 53 44 44 36 31 30 25 21 19 18 16 11 9 8 7 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>TTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>TTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAMTTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31906</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82545</contig_pos>
        <strand>+</strand>
        <context>attarmtttc[A/T]agmrttagtc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTC</left_flank>
        <right_flank>AGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGGAAATGGAGTGTTCGCAAATGATATTCGAGAGAGGACATCGCTGACTAATGTGACTTTGGATGAGAATCAGGGATACGCTGGTTTTTTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACG</canonical>
            <polymorphic>CGGGAAATGGAGTGTTCGCAAATGATATTCGAGAGAGGACATCGCTGACTAATGTGACTTTGGATGAGAATCAGGGATACGCTGGTTTTTTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCWAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>TTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>TTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCWAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31907</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82548</contig_pos>
        <strand>+</strand>
        <context>armtttcwag[A/C]rttagtctcc</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAG</left_flank>
        <right_flank>GTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATGGAGTGTTCGCAAATGATATTCGAGAGAGGACATCGCTGACTAATGTGACTTTGGATGAGAATCAGGGATACGCTGGTTTTTTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCC</canonical>
            <polymorphic>GAAATGGAGTGTTCGCAAATGATATTCGAGAGAGGACATCGCTGACTAATGTGACTTTGGATGAGAATCAGGGATACGCTGGTTTTTTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGMGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>TTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>TTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGMGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31908</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82549</contig_pos>
        <strand>+</strand>
        <context>rmtttcwagm[A/G]ttagtctccm</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGC</left_flank>
        <right_flank>TTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGGAGTGTTCGCAAATGATATTCGAGAGAGGACATCGCTGACTAATGTGACTTTGGATGAGAATCAGGGATACGCTGGTTTTTTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCA</canonical>
            <polymorphic>AAATGGAGTGTTCGCAAATGATATTCGAGAGAGGACATCGCTGACTAATGTGACTTTGGATGAGAATCAGGGATACGCTGGTTTTTTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCRTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>TTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>TTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCRTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31909</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82559</contig_pos>
        <strand>+</strand>
        <context>rttagtctcc[A/C]aaagrgacga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCC</left_flank>
        <right_flank>AAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGCAAATGATATTCGAGAGAGGACATCGCTGACTAATGTGACTTTGGATGAGAATCAGGGATACGCTGGTTTTTTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACA</canonical>
            <polymorphic>TTCGCAAATGATATTCGAGAGAGGACATCGCTGACTAATGTGACTTTGGATGAGAATCAGGGATACGCTGGTTTTTTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCMAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>TTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>TTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCMAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31910</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82564</contig_pos>
        <strand>+</strand>
        <context>tctccmaaag[A/G]gacgaagtta</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAG</left_flank>
        <right_flank>GACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATGATATTCGAGAGAGGACATCGCTGACTAATGTGACTTTGGATGAGAATCAGGGATACGCTGGTTTTTTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTC</canonical>
            <polymorphic>AAATGATATTCGAGAGAGGACATCGCTGACTAATGTGACTTTGGATGAGAATCAGGGATACGCTGGTTTTTTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGRGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>156 133 112 99 78 64 47 45 43 39 37 33 28 27 21 15 14 9</canonical_bands>
                <polymorphic_bands>156 133 112 99 99 64 47 45 43 39 37 33 28 27 15 14 9</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>494 386 78 34 8</canonical_bands>
                <polymorphic_bands>494 386 86 34</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>502 386 78 34</canonical_bands>
                <polymorphic_bands>580 386 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>TTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>TTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGRGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31911</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82581</contig_pos>
        <strand>+</strand>
        <context>gttacagtac[C/T]ywtcycatwa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTAC</left_flank>
        <right_flank>ATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGACATCGCTGACTAATGTGACTTTGGATGAGAATCAGGGATACGCTGGTTTTTTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAAT</canonical>
            <polymorphic>GGACATCGCTGACTAATGTGACTTTGGATGAGAATCAGGGATACGCTGGTTTTTTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACYATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>TTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>TTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACYATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31912</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82582</contig_pos>
        <strand>+</strand>
        <context>ttacagtacy[C/T]wtcycatwag</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACC</left_flank>
        <right_flank>TTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACATCGCTGACTAATGTGACTTTGGATGAGAATCAGGGATACGCTGGTTTTTTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATC</canonical>
            <polymorphic>GACATCGCTGACTAATGTGACTTTGGATGAGAATCAGGGATACGCTGGTTTTTTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCYTTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>TTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>TTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCYTTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31913</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82583</contig_pos>
        <strand>+</strand>
        <context>tacagtacyy[A/T]tcycatwagg</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCA</left_flank>
        <right_flank>TCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATCGCTGACTAATGTGACTTTGGATGAGAATCAGGGATACGCTGGTTTTTTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCT</canonical>
            <polymorphic>ACATCGCTGACTAATGTGACTTTGGATGAGAATCAGGGATACGCTGGTTTTTTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCAWTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>TTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>TTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCAWTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31914</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82586</contig_pos>
        <strand>+</strand>
        <context>agtacyywtc[C/T]catwagggcg</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTC</left_flank>
        <right_flank>CATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGCTGACTAATGTGACTTTGGATGAGAATCAGGGATACGCTGGTTTTTTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCG</canonical>
            <polymorphic>TCGCTGACTAATGTGACTTTGGATGAGAATCAGGGATACGCTGGTTTTTTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCYCATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>156 133 112 99 78 64 55 47 45 43 39 28 27 21 15 15 14 9</canonical_bands>
                <polymorphic_bands>156 133 112 99 78 64 64 55 47 45 39 28 27 15 15 14 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>TTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>TTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCYCATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31915</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82590</contig_pos>
        <strand>+</strand>
        <context>cyywtcycat[A/T]agggcgccgc</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACAT</left_flank>
        <right_flank>AGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACTAATGTGACTTTGGATGAGAATCAGGGATACGCTGGTTTTTTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAA</canonical>
            <polymorphic>TGACTAATGTGACTTTGGATGAGAATCAGGGATACGCTGGTTTTTTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATWAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 296 201</canonical_bands>
                <polymorphic_bands>704 296</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>TTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>TTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATWAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31916</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82612</contig_pos>
        <strand>+</strand>
        <context>cgccgtctag[C/T]ttctctgcgc</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAG</left_flank>
        <right_flank>TTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATCAGGGATACGCTGGTTTTTTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATT</canonical>
            <polymorphic>GAATCAGGGATACGCTGGTTTTTTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGYTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>TTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>TTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGYTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31917</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82632</contig_pos>
        <strand>+</strand>
        <context>ctctctcacc[C/T]ctttyacgyk</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACC</left_flank>
        <right_flank>CTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGG</canonical>
            <polymorphic>TTTTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCYCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>TTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>TTGGTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCYCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31918</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82637</contig_pos>
        <strand>+</strand>
        <context>tcaccycttt[C/T]acgyktttgr</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTT</left_flank>
        <right_flank>ACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACG</canonical>
            <polymorphic>GTCAAGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTYACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>TTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>TYACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31919</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82641</contig_pos>
        <strand>+</strand>
        <context>cyctttyacg[C/T]ktttgrcwgc</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACG</left_flank>
        <right_flank>TTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATC</canonical>
            <polymorphic>AGGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGYTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>503 318 179</canonical_bands>
                <polymorphic_bands>821 179</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>GTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>GYTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31920</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82642</contig_pos>
        <strand>+</strand>
        <context>yctttyacgy[G/T]tttgrcwgca</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGT</left_flank>
        <right_flank>TTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCG</canonical>
            <polymorphic>GGTGAGTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTKTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>TKTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31921</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82647</contig_pos>
        <strand>+</strand>
        <context>yacgyktttg[A/G]cwgcatmtcg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTG</left_flank>
        <right_flank>CAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTG</canonical>
            <polymorphic>GTAGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGRCAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>GACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>GRCAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31922</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82649</contig_pos>
        <strand>+</strand>
        <context>cgyktttgrc[A/T]gcatmtcggc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGAC</left_flank>
        <right_flank>GCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGA</canonical>
            <polymorphic>AGAGTGAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACWGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>CAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>CWGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31923</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82654</contig_pos>
        <strand>+</strand>
        <context>ttgrcwgcat[A/C]tcggctcaka</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCAT</left_flank>
        <right_flank>TCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGG</canonical>
            <polymorphic>GAATTTTCCGAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATMTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>TCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>TMTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31924</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82663</contig_pos>
        <strand>+</strand>
        <context>tmtcggctca[G/T]agkkgctcaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCA</left_flank>
        <right_flank>AGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAA</canonical>
            <polymorphic>GAAACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAKAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>499 423 78</canonical_bands>
                <polymorphic_bands>922 78</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>AGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>AKAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31925</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82666</contig_pos>
        <strand>+</strand>
        <context>cggctcakag[G/T]kgctcaaact</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAG</left_flank>
        <right_flank>TGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAAAAT</canonical>
            <polymorphic>ACATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGKTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>145 133 112 99 78 65 64 47 43 39 28 28 27 24 21 15 14 13 5</canonical_bands>
                <polymorphic_bands>172 145 112 99 78 65 64 47 43 28 28 27 24 21 15 14 13 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>GGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>GKTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31926</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82667</contig_pos>
        <strand>+</strand>
        <context>ggctcakagk[G/T]gctcaaactt</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGG</left_flank>
        <right_flank>GCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAAAATC</canonical>
            <polymorphic>CATCAATTTCATACTCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGKGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>144 133 112 99 78 65 64 47 43 39 28 28 27 24 21 15 14 14 5</canonical_bands>
                <polymorphic_bands>172 144 112 99 78 65 64 47 43 28 28 27 24 21 15 14 14 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>GTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>GKGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31927</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82681</contig_pos>
        <strand>+</strand>
        <context>caaacttgat[A/G]raawskawat</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGAT</left_flank>
        <right_flank>AAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAAAATCCCCCTATCCAGTCC</canonical>
            <polymorphic>TCAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATRAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAAAATCCCCCTATCCAGTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>TGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>TRAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31928</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82682</contig_pos>
        <strand>+</strand>
        <context>aaacttgatr[A/G]aawskawatw</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATG</left_flank>
        <right_flank>AAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAAAATCCCCCTATCCAGTCCT</canonical>
            <polymorphic>CAATCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGRAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAAAATCCCCCTATCCAGTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>GAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>GRAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31929</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82685</contig_pos>
        <strand>+</strand>
        <context>cttgatrraa[A/T]skawatwtty</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAA</left_flank>
        <right_flank>CTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAAAATCCCCCTATCCAGTCCTTAT</canonical>
            <polymorphic>TCGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAWCTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAAAATCCCCCTATCCAGTCCTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>AACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>AWCTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31930</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82686</contig_pos>
        <strand>+</strand>
        <context>ttgatrraaw[C/G]kawatwttyc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAA</left_flank>
        <right_flank>TAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAAAATCCCCCTATCCAGTCCTTATT</canonical>
            <polymorphic>CGAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAASTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAAAATCCCCCTATCCAGTCCTTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>ACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>ASTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31931</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82687</contig_pos>
        <strand>+</strand>
        <context>tgatrraaws[G/T]awatwttycw</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAAC</left_flank>
        <right_flank>AAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAAAATCCCCCTATCCAGTCCTTATTT</canonical>
            <polymorphic>GAACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACKAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAAAATCCCCCTATCCAGTCCTTATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>CTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>CKAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31932</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82689</contig_pos>
        <strand>+</strand>
        <context>atrraawska[A/T]atwttycwaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTA</left_flank>
        <right_flank>ATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAAAATCCCCCTATCCAGTCCTTATTTCC</canonical>
            <polymorphic>ACCGTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAWATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAAAATCCCCCTATCCAGTCCTTATTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>266 165 150 95 77 69 35 31 27 25 18 17 11 7 7</canonical_bands>
                <polymorphic_bands>266 167 165 95 77 69 35 31 27 25 18 11 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>150 103 95 77 64 62 58 53 44 36 35 31 30 26 25 21 19 18 11 9 8 7 7 6 5</canonical_bands>
                <polymorphic_bands>159 103 95 77 64 62 58 53 44 36 35 31 30 26 25 21 19 18 11 8 7 7 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>AAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>AWATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31933</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82692</contig_pos>
        <strand>+</strand>
        <context>raawskawat[A/T]ttycwaatta</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAAT</left_flank>
        <right_flank>TTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAAAATCCCCCTATCCAGTCCTTATTTCCAAA</canonical>
            <polymorphic>GTCTTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATWTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAAAATCCCCCTATCCAGTCCTTATTTCCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>266 162 150 95 77 69 38 31 27 25 18 17 11 7 7</canonical_bands>
                <polymorphic_bands>266 167 162 95 77 69 38 31 27 25 18 11 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>150 103 95 77 64 62 58 53 44 38 36 31 30 25 23 21 19 18 11 9 8 7 7 6 5</canonical_bands>
                <polymorphic_bands>159 103 95 77 64 62 58 53 44 38 36 31 30 25 23 21 19 18 11 8 7 7 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>TTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>TWTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31934</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82695</contig_pos>
        <strand>+</strand>
        <context>wskawatwtt[C/T]cwaattagaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTT</left_flank>
        <right_flank>CTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAAAATCCCCCTATCCAGTCCTTATTTCCAAAATT</canonical>
            <polymorphic>TTGCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTYCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAAAATCCCCCTATCCAGTCCTTATTTCCAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>TCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>TYCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31935</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82697</contig_pos>
        <strand>+</strand>
        <context>kawatwttyc[A/T]aattagaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCC</left_flank>
        <right_flank>AATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAAAATCCCCCTATCCAGTCCTTATTTCCAAAATTGG</canonical>
            <polymorphic>GCTTCGCTGATTCCAAAAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCWAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAAAATCCCCCTATCCAGTCCTTATTTCCAAAATTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>CTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>CWAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31936</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82713</contig_pos>
        <strand>+</strand>
        <context>gaaaatttag[A/G]cggrtcgaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAG</left_flank>
        <right_flank>CGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAAAATCCCCCTATCCAGTCCTTATTTCCAAAATTGGAATCAAAAATTTTGAT</canonical>
            <polymorphic>AAAATTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGRCGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAAAATCCCCCTATCCAGTCCTTATTTCCAAAATTGGAATCAAAAATTTTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>361 179 139 139 137 45</canonical_bands>
                <polymorphic_bands>500 179 139 137 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>GACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>GRCGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31937</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82717</contig_pos>
        <strand>+</strand>
        <context>atttagrcgg[A/G]tcgaatgagt</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGG</left_flank>
        <right_flank>TCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAAAATCCCCCTATCCAGTCCTTATTTCCAAAATTGGAATCAAAAATTTTGATCTCG</canonical>
            <polymorphic>TTACTTTACAACCTTCCATCTCAAAAACTGACCAAATTACAGTACTCTTGAGAAAGGAGCGCCGCGCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGRTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAAAATCCCCCTATCCAGTCCTTATTTCCAAAATTGGAATCAAAAATTTTGATCTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>361 179 141 139 139 41</canonical_bands>
                <polymorphic_bands>500 179 141 139 41</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>GTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>GRTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31938</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82782</contig_pos>
        <strand>+</strand>
        <context>CAATTTTCGT[A/C]CTAAATARGC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGT</left_flank>
        <right_flank>CTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAAAATCCCCCTATCCAGTCCTTATTTCCAAAATTGGAATCAAAAATTTTGATCTCGTGGGTCGAATTTCTAAAAAATCAATATCACCCTTCCCTGGAAATCTTTTCGTGTCGAGACCCATA</canonical>
            <polymorphic>GCGCCGTCTAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTMCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAAAATCCCCCTATCCAGTCCTTATTTCCAAAATTGGAATCAAAAATTTTGATCTCGTGGGTCGAATTTCTAAAAAATCAATATCACCCTTCCCTGGAAATCTTTTCGTGTCGAGACCCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>TCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>TMCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31939</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82790</contig_pos>
        <strand>+</strand>
        <context>GTMCTAAATA[A/G]GCGAATTTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATA</left_flank>
        <right_flank>GCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAAAATCCCCCTATCCAGTCCTTATTTCCAAAATTGGAATCAAAAATTTTGATCTCGTGGGTCGAATTTCTAAAAAATCAATATCACCCTTCCCTGGAAATCTTTTCGTGTCGAGACCCATATGTGACCC</canonical>
            <polymorphic>TAGCTTCTCTGCGCTCTCTCACCATCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATARGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAAAATCCCCCTATCCAGTCCTTATTTCCAAAATTGGAATCAAAAATTTTGATCTCGTGGGTCGAATTTCTAAAAAATCAATATCACCCTTCCCTGGAAATCTTTTCGTGTCGAGACCCATATGTGACCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTCAAGGTGAGTAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCTGGAATTACAGATTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>AAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</canonical_amplicon>
		<polymorphic_amplicon>ARGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31940</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>82814</contig_pos>
        <strand>+</strand>
        <context>TTTCAAAAAA[A/T]CTTTTCAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAA</left_flank>
        <right_flank>CTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAAAATCCCCCTATCCAGTCCTTATTTCCAAAATTGGAATCAAAAATTTTGATCTCGTGGGTCGAATTTCTAAAAAATCAATATCACCCTTCCCTGGAAATCTTTTCGTGTCGAGACCCATATGTGACCCAGAATTTAATCGATATTACCGGAA</canonical>
            <polymorphic>TCTTTACGTCTTTGGCTATATATTGTCTCATAGCGGCTTAAATTTGATGAAAACTATATTTTCAAAATCAGCATGACTAGACGGTTTGAATGAGTTTTAATTTGGTCCACTTCCTAAAATTTTGAATTTTGTAAAAATAAAAAAAAAATGTTTCAAATTTTTTTTTTTATGTGACAAGTTTATACTCAATCAAACCATTTTGACTTGCTGATATCAAAAAATTAAATTTCAAGCGTTAGTCTCCAAAAGTGACGAAGTTACAGTACCATTCACATGAGGGCGCCGCGCGCCGTCTAGTTTCTCTGCGCTCTCTCACCCCTTTTACGTTTTTGACAGCATCTCGGCTCAGAGGTGCTCAAACTTGATGAAAACTAAATTTTCCTAATTAGAAAATTTAGACGGTTCGAATGAGTATGAATTCGATATACTTTTTAAATTTTGAATTTTTTGAAAATTCCAATTTTCGTCCTAAATAAGCGAATTTCCACTTTTCAAAAAAWCTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTATGCTGGTGGATCGATAATGGTGAATGGGACCAGAATTGAGAATAATCGTTGGAGAGGCGCCGCAATTCACTATAACCAAACGATTCCATTTTTTCCACTATACAACGAAGTGATTTTTAAAGGACGCCCATCGAACAACAAATTCTATCTGCCTACAGTAATCTCCGAAAATGAGTGGGGTGGTTTATTGATTGGAAACTATTGTGCTTACGGGAACGAATCGCATTGGAGGTGGAATTTCAAAAATCCCCCTATCCAGTCCTTATTTCCAAAATTGGAATCAAAAATTTTGATCTCGTGGGTCGAATTTCTAAAAAATCAATATCACCCTTCCCTGGAAATCTTTTCGTGTCGAGACCCATATGTGACCCAGAATTTAATCGATATTACCGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGGTCAAGGTGAGTAGAG</pcr_primer_p1>
		<pcr_primer_p2>ATACGAAATATTCATTCCATCAC</pcr_primer_p2>
		<pcr_amplicon_size>789</pcr_amplicon_size>
		<canonical_amplicon>AACTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTAT</canonical_amplicon>
		<polymorphic_amplicon>AWCTTTTCAAAATCAAATAATCTGTAATTCCAGGACGGCGCCGCTGATATCTGGCTGAACGAGACCCGGATTTTTCGCAATTGGGGTGATGGAATGAATATTTCGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31941</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>85606</contig_pos>
        <strand>-</strand>
        <context>agttttttga[A/T]atcagcaagt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGTAACTTTGTCATTTTTTGAGATAGATTCTAGAAAGCTAGTTTTTTGA</left_flank>
        <right_flank>ATCAGCAAGTCAAGACGGTTTGAATGAGTATAAATTTGACCTACTTTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTACCTGCCGGACATGAAAACCGAAAAAAAACCGGGAAATTTACCACGTAGGAAAGGCTGTCAGGTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTTTTCCTTTTCAACGCCGTTTTTCGGGAATTGCGGATTTTTTTTGAATTTTTTCGCAATAATATTCGGAAAATAGATAACTTTTAACACATTTTCATGCAATAAAAATTTTTGGTCGGAGTCCCCCTTTAAACATTTCAGAAAAATCAAAATTTTTGAAACCAGGTCATGTTTATACTCATTTGAACCGCCTAATTTTGCTAATTTGAAATATATCCTCTATCAAGTTTGAGCCACTATGAGCCGATATAGCCAAACGCGTGAAAGAGGTGAGAGAGCGCAGAGAAGCTAGACGGCGCGCGGCGCCCCTAAGTAAACAATACTGTAACTTTGTCATTTTTTGAGATAGATTCTAGAAAGCTAGTTTTTTGAAATCAGCAAGTCAAGACGGTTTGAATGAGTATAAATTTGACCTACTTTCAAATAAAAAACACTTTCGAAAATAAAAAACAAAATTATCGAAATTCAAAAAAAAAATCCAAAAAAATGTTTTTTAAAATATATCAAACTTACATTTATTAGAACCCTCCCTTTTGCTGATTCCAAAAATATAGCAATTATCCAATTTGAGCCACTATGAGCCGAGATATAGCCGAAAACGCAAGATTGAGAGAGAGTGCAGAGAAGCCAGACGGCACGCGGCGCCCCTTTATTAATTGTATTGTAACTCGGTCAGTTTTTGAGATAAATACTCGAAAATTTGATTTTTGAACTTAGCAAGTCAAGACGGTTTGAATGAGTCTAAATTTGAACAAAATTTTTTTTCGATTTCCCGAAAATTGGACAAAAATCAAAAATATAGAATTTTCCGAATTTTTACATGTTGACTTTAAAGGAGGCCAGACTTGAAAATTTTCAAAATTCTAGTTTTGG</canonical>
            <polymorphic>TTTACCTGCCGGACATGAAAACCGAAAAAAAACCGGGAAATTTACCACGTAGGAAAGGCTGTCAGGTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTTTTCCTTTTCAACGCCGTTTTTCGGGAATTGCGGATTTTTTTTGAATTTTTTCGCAATAATATTCGGAAAATAGATAACTTTTAACACATTTTCATGCAATAAAAATTTTTGGTCGGAGTCCCCCTTTAAACATTTCAGAAAAATCAAAATTTTTGAAACCAGGTCATGTTTATACTCATTTGAACCGCCTAATTTTGCTAATTTGAAATATATCCTCTATCAAGTTTGAGCCACTATGAGCCGATATAGCCAAACGCGTGAAAGAGGTGAGAGAGCGCAGAGAAGCTAGACGGCGCGCGGCGCCCCTAAGTAAACAATACTGTAACTTTGTCATTTTTTGAGATAGATTCTAGAAAGCTAGTTTTTTGAWATCAGCAAGTCAAGACGGTTTGAATGAGTATAAATTTGACCTACTTTCAAATAAAAAACACTTTCGAAAATAAAAAACAAAATTATCGAAATTCAAAAAAAAAATCCAAAAAAATGTTTTTTAAAATATATCAAACTTACATTTATTAGAACCCTCCCTTTTGCTGATTCCAAAAATATAGCAATTATCCAATTTGAGCCACTATGAGCCGAGATATAGCCGAAAACGCAAGATTGAGAGAGAGTGCAGAGAAGCCAGACGGCACGCGGCGCCCCTTTATTAATTGTATTGTAACTCGGTCAGTTTTTGAGATAAATACTCGAAAATTTGATTTTTGAACTTAGCAAGTCAAGACGGTTTGAATGAGTCTAAATTTGAACAAAATTTTTTTTCGATTTCCCGAAAATTGGACAAAAATCAAAAATATAGAATTTTCCGAATTTTTACATGTTGACTTTAAAGGAGGCCAGACTTGAAAATTTTCAAAATTCTAGTTTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGGAAAATAGATAACTTTTAACAC</pcr_primer_p1>
		<pcr_primer_p2>TTCTATATTTTTGATTTTTGTCCA</pcr_primer_p2>
		<pcr_amplicon_size>739</pcr_amplicon_size>
		<canonical_amplicon>TCGGAAAATAGATAACTTTTAACACATTTTCATGCAATAAAAATTTTTGGTCGGAGTCCCCCTTTAAACATTTCAGAAAAATCAAAATTTTTGAAACCAGGTCATGTTTATACTCATTTGAACCGCCTAATTTTGCTAATTTGAAATATATCCTCTATCAAGTTTGAGCCACTATGAGCCGATATAGCCAAACGCGTGAAAGAGGTGAGAGAGCGCAGAGAAGCTAGACGGCGCGCGGCGCCCCTAAGTAAACAATACTGTAACTTTGTCATTTTTTGAGATAGATTCTAGAAAGCTAGTTTTTTGAAATCAGCAAGTCAAGACGGTTTGAATGAGTATAAATTTGACCTACTTTCAAATAAAAAACACTTTCGAAAATAAAAAACAAAATTATCGAAATTCAAAAAAAAAATCCAAAAAAATGTTTTTTAAAATATATCAAACTTACATTTATTAGAACCCTCCCTTTTGCTGATTCCAAAAATATAGCAATTATCCAATTTGAGCCACTATGAGCCGAGATATAGCCGAAAACGCAAGATTGAGAGAGAGTGCAGAGAAGCCAGACGGCACGCGGCGCCCCTTTATTAATTGTATTGTAACTCGGTCAGTTTTTGAGATAAATACTCGAAAATTTGATTTTTGAACTTAGCAAGTCAAGACGGTTTGAATGAGTCTAAATTTGAACAAAATTTTTTTTCGATTTCCCGAAAATTGGACAAAAATCAAAAATATAGAA</canonical_amplicon>
		<polymorphic_amplicon>TCGGAAAATAGATAACTTTTAACACATTTTCATGCAATAAAAATTTTTGGTCGGAGTCCCCCTTTAAACATTTCAGAAAAATCAAAATTTTTGAAACCAGGTCATGTTTATACTCATTTGAACCGCCTAATTTTGCTAATTTGAAATATATCCTCTATCAAGTTTGAGCCACTATGAGCCGATATAGCCAAACGCGTGAAAGAGGTGAGAGAGCGCAGAGAAGCTAGACGGCGCGCGGCGCCCCTAAGTAAACAATACTGTAACTTTGTCATTTTTTGAGATAGATTCTAGAAAGCTAGTTTTTTGAWATCAGCAAGTCAAGACGGTTTGAATGAGTATAAATTTGACCTACTTTCAAATAAAAAACACTTTCGAAAATAAAAAACAAAATTATCGAAATTCAAAAAAAAAATCCAAAAAAATGTTTTTTAAAATATATCAAACTTACATTTATTAGAACCCTCCCTTTTGCTGATTCCAAAAATATAGCAATTATCCAATTTGAGCCACTATGAGCCGAGATATAGCCGAAAACGCAAGATTGAGAGAGAGTGCAGAGAAGCCAGACGGCACGCGGCGCCCCTTTATTAATTGTATTGTAACTCGGTCAGTTTTTGAGATAAATACTCGAAAATTTGATTTTTGAACTTAGCAAGTCAAGACGGTTTGAATGAGTCTAAATTTGAACAAAATTTTTTTTCGATTTCCCGAAAATTGGACAAAAATCAAAAATATAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31942</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>85620</contig_pos>
        <strand>-</strand>
        <context>agcaagtcaa[C/T]arggtttgaw</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTGAGATAGATTCTAGAAAGCTAGTTTTTTGAAATCAGCAAGTCAA</left_flank>
        <right_flank>ACGGTTTGAATGAGTATAAATTTGACCTACTTTCAAATAAAAAACACTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAAAACCGAAAAAAAACCGGGAAATTTACCACGTAGGAAAGGCTGTCAGGTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTTTTCCTTTTCAACGCCGTTTTTCGGGAATTGCGGATTTTTTTTGAATTTTTTCGCAATAATATTCGGAAAATAGATAACTTTTAACACATTTTCATGCAATAAAAATTTTTGGTCGGAGTCCCCCTTTAAACATTTCAGAAAAATCAAAATTTTTGAAACCAGGTCATGTTTATACTCATTTGAACCGCCTAATTTTGCTAATTTGAAATATATCCTCTATCAAGTTTGAGCCACTATGAGCCGATATAGCCAAACGCGTGAAAGAGGTGAGAGAGCGCAGAGAAGCTAGACGGCGCGCGGCGCCCCTAAGTAAACAATACTGTAACTTTGTCATTTTTTGAGATAGATTCTAGAAAGCTAGTTTTTTGAAATCAGCAAGTCAAGACGGTTTGAATGAGTATAAATTTGACCTACTTTCAAATAAAAAACACTTTCGAAAATAAAAAACAAAATTATCGAAATTCAAAAAAAAAATCCAAAAAAATGTTTTTTAAAATATATCAAACTTACATTTATTAGAACCCTCCCTTTTGCTGATTCCAAAAATATAGCAATTATCCAATTTGAGCCACTATGAGCCGAGATATAGCCGAAAACGCAAGATTGAGAGAGAGTGCAGAGAAGCCAGACGGCACGCGGCGCCCCTTTATTAATTGTATTGTAACTCGGTCAGTTTTTGAGATAAATACTCGAAAATTTGATTTTTGAACTTAGCAAGTCAAGACGGTTTGAATGAGTCTAAATTTGAACAAAATTTTTTTTCGATTTCCCGAAAATTGGACAAAAATCAAAAATATAGAATTTTCCGAATTTTTACATGTTGACTTTAAAGGAGGCCAGACTTGAAAATTTTCAAAATTCTAGTTTTGGGATATTTGACACAG</canonical>
            <polymorphic>ATGAAAACCGAAAAAAAACCGGGAAATTTACCACGTAGGAAAGGCTGTCAGGTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTTTTCCTTTTCAACGCCGTTTTTCGGGAATTGCGGATTTTTTTTGAATTTTTTCGCAATAATATTCGGAAAATAGATAACTTTTAACACATTTTCATGCAATAAAAATTTTTGGTCGGAGTCCCCCTTTAAACATTTCAGAAAAATCAAAATTTTTGAAACCAGGTCATGTTTATACTCATTTGAACCGCCTAATTTTGCTAATTTGAAATATATCCTCTATCAAGTTTGAGCCACTATGAGCCGATATAGCCAAACGCGTGAAAGAGGTGAGAGAGCGCAGAGAAGCTAGACGGCGCGCGGCGCCCCTAAGTAAACAATACTGTAACTTTGTCATTTTTTGAGATAGATTCTAGAAAGCTAGTTTTTTGAAATCAGCAAGTCAAYACGGTTTGAATGAGTATAAATTTGACCTACTTTCAAATAAAAAACACTTTCGAAAATAAAAAACAAAATTATCGAAATTCAAAAAAAAAATCCAAAAAAATGTTTTTTAAAATATATCAAACTTACATTTATTAGAACCCTCCCTTTTGCTGATTCCAAAAATATAGCAATTATCCAATTTGAGCCACTATGAGCCGAGATATAGCCGAAAACGCAAGATTGAGAGAGAGTGCAGAGAAGCCAGACGGCACGCGGCGCCCCTTTATTAATTGTATTGTAACTCGGTCAGTTTTTGAGATAAATACTCGAAAATTTGATTTTTGAACTTAGCAAGTCAAGACGGTTTGAATGAGTCTAAATTTGAACAAAATTTTTTTTCGATTTCCCGAAAATTGGACAAAAATCAAAAATATAGAATTTTCCGAATTTTTACATGTTGACTTTAAAGGAGGCCAGACTTGAAAATTTTCAAAATTCTAGTTTTGGGATATTTGACACAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>339 328 138 115 49 31</canonical_bands>
                <polymorphic_bands>370 328 138 115 49</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGGAAAATAGATAACTTTTAACAC</pcr_primer_p1>
		<pcr_primer_p2>TTCTATATTTTTGATTTTTGTCCA</pcr_primer_p2>
		<pcr_amplicon_size>739</pcr_amplicon_size>
		<canonical_amplicon>TCGGAAAATAGATAACTTTTAACACATTTTCATGCAATAAAAATTTTTGGTCGGAGTCCCCCTTTAAACATTTCAGAAAAATCAAAATTTTTGAAACCAGGTCATGTTTATACTCATTTGAACCGCCTAATTTTGCTAATTTGAAATATATCCTCTATCAAGTTTGAGCCACTATGAGCCGATATAGCCAAACGCGTGAAAGAGGTGAGAGAGCGCAGAGAAGCTAGACGGCGCGCGGCGCCCCTAAGTAAACAATACTGTAACTTTGTCATTTTTTGAGATAGATTCTAGAAAGCTAGTTTTTTGAAATCAGCAAGTCAAGACGGTTTGAATGAGTATAAATTTGACCTACTTTCAAATAAAAAACACTTTCGAAAATAAAAAACAAAATTATCGAAATTCAAAAAAAAAATCCAAAAAAATGTTTTTTAAAATATATCAAACTTACATTTATTAGAACCCTCCCTTTTGCTGATTCCAAAAATATAGCAATTATCCAATTTGAGCCACTATGAGCCGAGATATAGCCGAAAACGCAAGATTGAGAGAGAGTGCAGAGAAGCCAGACGGCACGCGGCGCCCCTTTATTAATTGTATTGTAACTCGGTCAGTTTTTGAGATAAATACTCGAAAATTTGATTTTTGAACTTAGCAAGTCAAGACGGTTTGAATGAGTCTAAATTTGAACAAAATTTTTTTTCGATTTCCCGAAAATTGGACAAAAATCAAAAATATAGAA</canonical_amplicon>
		<polymorphic_amplicon>TCGGAAAATAGATAACTTTTAACACATTTTCATGCAATAAAAATTTTTGGTCGGAGTCCCCCTTTAAACATTTCAGAAAAATCAAAATTTTTGAAACCAGGTCATGTTTATACTCATTTGAACCGCCTAATTTTGCTAATTTGAAATATATCCTCTATCAAGTTTGAGCCACTATGAGCCGATATAGCCAAACGCGTGAAAGAGGTGAGAGAGCGCAGAGAAGCTAGACGGCGCGCGGCGCCCCTAAGTAAACAATACTGTAACTTTGTCATTTTTTGAGATAGATTCTAGAAAGCTAGTTTTTTGAAATCAGCAAGTCAAYACGGTTTGAATGAGTATAAATTTGACCTACTTTCAAATAAAAAACACTTTCGAAAATAAAAAACAAAATTATCGAAATTCAAAAAAAAAATCCAAAAAAATGTTTTTTAAAATATATCAAACTTACATTTATTAGAACCCTCCCTTTTGCTGATTCCAAAAATATAGCAATTATCCAATTTGAGCCACTATGAGCCGAGATATAGCCGAAAACGCAAGATTGAGAGAGAGTGCAGAGAAGCCAGACGGCACGCGGCGCCCCTTTATTAATTGTATTGTAACTCGGTCAGTTTTTGAGATAAATACTCGAAAATTTGATTTTTGAACTTAGCAAGTCAAGACGGTTTGAATGAGTCTAAATTTGAACAAAATTTTTTTTCGATTTCCCGAAAATTGGACAAAAATCAAAAATATAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31943</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>85622</contig_pos>
        <strand>-</strand>
        <context>caagtcaaya[A/G]ggtttgawtg</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGAGATAGATTCTAGAAAGCTAGTTTTTTGAAATCAGCAAGTCAAGA</left_flank>
        <right_flank>GGTTTGAATGAGTATAAATTTGACCTACTTTCAAATAAAAAACACTTTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAACCGAAAAAAAACCGGGAAATTTACCACGTAGGAAAGGCTGTCAGGTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTTTTCCTTTTCAACGCCGTTTTTCGGGAATTGCGGATTTTTTTTGAATTTTTTCGCAATAATATTCGGAAAATAGATAACTTTTAACACATTTTCATGCAATAAAAATTTTTGGTCGGAGTCCCCCTTTAAACATTTCAGAAAAATCAAAATTTTTGAAACCAGGTCATGTTTATACTCATTTGAACCGCCTAATTTTGCTAATTTGAAATATATCCTCTATCAAGTTTGAGCCACTATGAGCCGATATAGCCAAACGCGTGAAAGAGGTGAGAGAGCGCAGAGAAGCTAGACGGCGCGCGGCGCCCCTAAGTAAACAATACTGTAACTTTGTCATTTTTTGAGATAGATTCTAGAAAGCTAGTTTTTTGAAATCAGCAAGTCAAGACGGTTTGAATGAGTATAAATTTGACCTACTTTCAAATAAAAAACACTTTCGAAAATAAAAAACAAAATTATCGAAATTCAAAAAAAAAATCCAAAAAAATGTTTTTTAAAATATATCAAACTTACATTTATTAGAACCCTCCCTTTTGCTGATTCCAAAAATATAGCAATTATCCAATTTGAGCCACTATGAGCCGAGATATAGCCGAAAACGCAAGATTGAGAGAGAGTGCAGAGAAGCCAGACGGCACGCGGCGCCCCTTTATTAATTGTATTGTAACTCGGTCAGTTTTTGAGATAAATACTCGAAAATTTGATTTTTGAACTTAGCAAGTCAAGACGGTTTGAATGAGTCTAAATTTGAACAAAATTTTTTTTCGATTTCCCGAAAATTGGACAAAAATCAAAAATATAGAATTTTCCGAATTTTTACATGTTGACTTTAAAGGAGGCCAGACTTGAAAATTTTCAAAATTCTAGTTTTGGGATATTTGACACAGTA</canonical>
            <polymorphic>GAAAACCGAAAAAAAACCGGGAAATTTACCACGTAGGAAAGGCTGTCAGGTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTTTTCCTTTTCAACGCCGTTTTTCGGGAATTGCGGATTTTTTTTGAATTTTTTCGCAATAATATTCGGAAAATAGATAACTTTTAACACATTTTCATGCAATAAAAATTTTTGGTCGGAGTCCCCCTTTAAACATTTCAGAAAAATCAAAATTTTTGAAACCAGGTCATGTTTATACTCATTTGAACCGCCTAATTTTGCTAATTTGAAATATATCCTCTATCAAGTTTGAGCCACTATGAGCCGATATAGCCAAACGCGTGAAAGAGGTGAGAGAGCGCAGAGAAGCTAGACGGCGCGCGGCGCCCCTAAGTAAACAATACTGTAACTTTGTCATTTTTTGAGATAGATTCTAGAAAGCTAGTTTTTTGAAATCAGCAAGTCAAGARGGTTTGAATGAGTATAAATTTGACCTACTTTCAAATAAAAAACACTTTCGAAAATAAAAAACAAAATTATCGAAATTCAAAAAAAAAATCCAAAAAAATGTTTTTTAAAATATATCAAACTTACATTTATTAGAACCCTCCCTTTTGCTGATTCCAAAAATATAGCAATTATCCAATTTGAGCCACTATGAGCCGAGATATAGCCGAAAACGCAAGATTGAGAGAGAGTGCAGAGAAGCCAGACGGCACGCGGCGCCCCTTTATTAATTGTATTGTAACTCGGTCAGTTTTTGAGATAAATACTCGAAAATTTGATTTTTGAACTTAGCAAGTCAAGACGGTTTGAATGAGTCTAAATTTGAACAAAATTTTTTTTCGATTTCCCGAAAATTGGACAAAAATCAAAAATATAGAATTTTCCGAATTTTTACATGTTGACTTTAAAGGAGGCCAGACTTGAAAATTTTCAAAATTCTAGTTTTGGGATATTTGACACAGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>435 339 157 66 3</canonical_bands>
                <polymorphic_bands>435 405 157 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGGAAAATAGATAACTTTTAACAC</pcr_primer_p1>
		<pcr_primer_p2>TTCTATATTTTTGATTTTTGTCCA</pcr_primer_p2>
		<pcr_amplicon_size>739</pcr_amplicon_size>
		<canonical_amplicon>TCGGAAAATAGATAACTTTTAACACATTTTCATGCAATAAAAATTTTTGGTCGGAGTCCCCCTTTAAACATTTCAGAAAAATCAAAATTTTTGAAACCAGGTCATGTTTATACTCATTTGAACCGCCTAATTTTGCTAATTTGAAATATATCCTCTATCAAGTTTGAGCCACTATGAGCCGATATAGCCAAACGCGTGAAAGAGGTGAGAGAGCGCAGAGAAGCTAGACGGCGCGCGGCGCCCCTAAGTAAACAATACTGTAACTTTGTCATTTTTTGAGATAGATTCTAGAAAGCTAGTTTTTTGAAATCAGCAAGTCAAGACGGTTTGAATGAGTATAAATTTGACCTACTTTCAAATAAAAAACACTTTCGAAAATAAAAAACAAAATTATCGAAATTCAAAAAAAAAATCCAAAAAAATGTTTTTTAAAATATATCAAACTTACATTTATTAGAACCCTCCCTTTTGCTGATTCCAAAAATATAGCAATTATCCAATTTGAGCCACTATGAGCCGAGATATAGCCGAAAACGCAAGATTGAGAGAGAGTGCAGAGAAGCCAGACGGCACGCGGCGCCCCTTTATTAATTGTATTGTAACTCGGTCAGTTTTTGAGATAAATACTCGAAAATTTGATTTTTGAACTTAGCAAGTCAAGACGGTTTGAATGAGTCTAAATTTGAACAAAATTTTTTTTCGATTTCCCGAAAATTGGACAAAAATCAAAAATATAGAA</canonical_amplicon>
		<polymorphic_amplicon>TCGGAAAATAGATAACTTTTAACACATTTTCATGCAATAAAAATTTTTGGTCGGAGTCCCCCTTTAAACATTTCAGAAAAATCAAAATTTTTGAAACCAGGTCATGTTTATACTCATTTGAACCGCCTAATTTTGCTAATTTGAAATATATCCTCTATCAAGTTTGAGCCACTATGAGCCGATATAGCCAAACGCGTGAAAGAGGTGAGAGAGCGCAGAGAAGCTAGACGGCGCGCGGCGCCCCTAAGTAAACAATACTGTAACTTTGTCATTTTTTGAGATAGATTCTAGAAAGCTAGTTTTTTGAAATCAGCAAGTCAAGARGGTTTGAATGAGTATAAATTTGACCTACTTTCAAATAAAAAACACTTTCGAAAATAAAAAACAAAATTATCGAAATTCAAAAAAAAAATCCAAAAAAATGTTTTTTAAAATATATCAAACTTACATTTATTAGAACCCTCCCTTTTGCTGATTCCAAAAATATAGCAATTATCCAATTTGAGCCACTATGAGCCGAGATATAGCCGAAAACGCAAGATTGAGAGAGAGTGCAGAGAAGCCAGACGGCACGCGGCGCCCCTTTATTAATTGTATTGTAACTCGGTCAGTTTTTGAGATAAATACTCGAAAATTTGATTTTTGAACTTAGCAAGTCAAGACGGTTTGAATGAGTCTAAATTTGAACAAAATTTTTTTTCGATTTCCCGAAAATTGGACAAAAATCAAAAATATAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31944</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>85630</contig_pos>
        <strand>-</strand>
        <context>yarggtttga[A/T]tgagtataaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGATTCTAGAAAGCTAGTTTTTTGAAATCAGCAAGTCAAGACGGTTTGA</left_flank>
        <right_flank>TGAGTATAAATTTGACCTACTTTCAAATAAAAAACACTTTCGAAAATAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAAACCGGGAAATTTACCACGTAGGAAAGGCTGTCAGGTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTTTTCCTTTTCAACGCCGTTTTTCGGGAATTGCGGATTTTTTTTGAATTTTTTCGCAATAATATTCGGAAAATAGATAACTTTTAACACATTTTCATGCAATAAAAATTTTTGGTCGGAGTCCCCCTTTAAACATTTCAGAAAAATCAAAATTTTTGAAACCAGGTCATGTTTATACTCATTTGAACCGCCTAATTTTGCTAATTTGAAATATATCCTCTATCAAGTTTGAGCCACTATGAGCCGATATAGCCAAACGCGTGAAAGAGGTGAGAGAGCGCAGAGAAGCTAGACGGCGCGCGGCGCCCCTAAGTAAACAATACTGTAACTTTGTCATTTTTTGAGATAGATTCTAGAAAGCTAGTTTTTTGAAATCAGCAAGTCAAGACGGTTTGAATGAGTATAAATTTGACCTACTTTCAAATAAAAAACACTTTCGAAAATAAAAAACAAAATTATCGAAATTCAAAAAAAAAATCCAAAAAAATGTTTTTTAAAATATATCAAACTTACATTTATTAGAACCCTCCCTTTTGCTGATTCCAAAAATATAGCAATTATCCAATTTGAGCCACTATGAGCCGAGATATAGCCGAAAACGCAAGATTGAGAGAGAGTGCAGAGAAGCCAGACGGCACGCGGCGCCCCTTTATTAATTGTATTGTAACTCGGTCAGTTTTTGAGATAAATACTCGAAAATTTGATTTTTGAACTTAGCAAGTCAAGACGGTTTGAATGAGTCTAAATTTGAACAAAATTTTTTTTCGATTTCCCGAAAATTGGACAAAAATCAAAAATATAGAATTTTCCGAATTTTTACATGTTGACTTTAAAGGAGGCCAGACTTGAAAATTTTCAAAATTCTAGTTTTGGGATATTTGACACAGTACAGTCAGA</canonical>
            <polymorphic>AAAAAAAACCGGGAAATTTACCACGTAGGAAAGGCTGTCAGGTGCCGTGGCCTAGGTTTCTCACTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTTTTCCTTTTCAACGCCGTTTTTCGGGAATTGCGGATTTTTTTTGAATTTTTTCGCAATAATATTCGGAAAATAGATAACTTTTAACACATTTTCATGCAATAAAAATTTTTGGTCGGAGTCCCCCTTTAAACATTTCAGAAAAATCAAAATTTTTGAAACCAGGTCATGTTTATACTCATTTGAACCGCCTAATTTTGCTAATTTGAAATATATCCTCTATCAAGTTTGAGCCACTATGAGCCGATATAGCCAAACGCGTGAAAGAGGTGAGAGAGCGCAGAGAAGCTAGACGGCGCGCGGCGCCCCTAAGTAAACAATACTGTAACTTTGTCATTTTTTGAGATAGATTCTAGAAAGCTAGTTTTTTGAAATCAGCAAGTCAAGACGGTTTGAWTGAGTATAAATTTGACCTACTTTCAAATAAAAAACACTTTCGAAAATAAAAAACAAAATTATCGAAATTCAAAAAAAAAATCCAAAAAAATGTTTTTTAAAATATATCAAACTTACATTTATTAGAACCCTCCCTTTTGCTGATTCCAAAAATATAGCAATTATCCAATTTGAGCCACTATGAGCCGAGATATAGCCGAAAACGCAAGATTGAGAGAGAGTGCAGAGAAGCCAGACGGCACGCGGCGCCCCTTTATTAATTGTATTGTAACTCGGTCAGTTTTTGAGATAAATACTCGAAAATTTGATTTTTGAACTTAGCAAGTCAAGACGGTTTGAATGAGTCTAAATTTGAACAAAATTTTTTTTCGATTTCCCGAAAATTGGACAAAAATCAAAAATATAGAATTTTCCGAATTTTTACATGTTGACTTTAAAGGAGGCCAGACTTGAAAATTTTCAAAATTCTAGTTTTGGGATATTTGACACAGTACAGTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGGAAAATAGATAACTTTTAACAC</pcr_primer_p1>
		<pcr_primer_p2>TTCTATATTTTTGATTTTTGTCCA</pcr_primer_p2>
		<pcr_amplicon_size>739</pcr_amplicon_size>
		<canonical_amplicon>TCGGAAAATAGATAACTTTTAACACATTTTCATGCAATAAAAATTTTTGGTCGGAGTCCCCCTTTAAACATTTCAGAAAAATCAAAATTTTTGAAACCAGGTCATGTTTATACTCATTTGAACCGCCTAATTTTGCTAATTTGAAATATATCCTCTATCAAGTTTGAGCCACTATGAGCCGATATAGCCAAACGCGTGAAAGAGGTGAGAGAGCGCAGAGAAGCTAGACGGCGCGCGGCGCCCCTAAGTAAACAATACTGTAACTTTGTCATTTTTTGAGATAGATTCTAGAAAGCTAGTTTTTTGAAATCAGCAAGTCAAGACGGTTTGAATGAGTATAAATTTGACCTACTTTCAAATAAAAAACACTTTCGAAAATAAAAAACAAAATTATCGAAATTCAAAAAAAAAATCCAAAAAAATGTTTTTTAAAATATATCAAACTTACATTTATTAGAACCCTCCCTTTTGCTGATTCCAAAAATATAGCAATTATCCAATTTGAGCCACTATGAGCCGAGATATAGCCGAAAACGCAAGATTGAGAGAGAGTGCAGAGAAGCCAGACGGCACGCGGCGCCCCTTTATTAATTGTATTGTAACTCGGTCAGTTTTTGAGATAAATACTCGAAAATTTGATTTTTGAACTTAGCAAGTCAAGACGGTTTGAATGAGTCTAAATTTGAACAAAATTTTTTTTCGATTTCCCGAAAATTGGACAAAAATCAAAAATATAGAA</canonical_amplicon>
		<polymorphic_amplicon>TCGGAAAATAGATAACTTTTAACACATTTTCATGCAATAAAAATTTTTGGTCGGAGTCCCCCTTTAAACATTTCAGAAAAATCAAAATTTTTGAAACCAGGTCATGTTTATACTCATTTGAACCGCCTAATTTTGCTAATTTGAAATATATCCTCTATCAAGTTTGAGCCACTATGAGCCGATATAGCCAAACGCGTGAAAGAGGTGAGAGAGCGCAGAGAAGCTAGACGGCGCGCGGCGCCCCTAAGTAAACAATACTGTAACTTTGTCATTTTTTGAGATAGATTCTAGAAAGCTAGTTTTTTGAAATCAGCAAGTCAAGACGGTTTGAWTGAGTATAAATTTGACCTACTTTCAAATAAAAAACACTTTCGAAAATAAAAAACAAAATTATCGAAATTCAAAAAAAAAATCCAAAAAAATGTTTTTTAAAATATATCAAACTTACATTTATTAGAACCCTCCCTTTTGCTGATTCCAAAAATATAGCAATTATCCAATTTGAGCCACTATGAGCCGAGATATAGCCGAAAACGCAAGATTGAGAGAGAGTGCAGAGAAGCCAGACGGCACGCGGCGCCCCTTTATTAATTGTATTGTAACTCGGTCAGTTTTTGAGATAAATACTCGAAAATTTGATTTTTGAACTTAGCAAGTCAAGACGGTTTGAATGAGTCTAAATTTGAACAAAATTTTTTTTCGATTTCCCGAAAATTGGACAAAAATCAAAAATATAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31945</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>87320</contig_pos>
        <strand></strand>
        <context>aatctgtcat[G/A]tttatactca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGATTTTTTTGAAATTTCAAAAACATTCAATTTTTTGAAAAATCTGTCAT</left_flank>
        <right_flank>TTTATACTCATTCAAATTGTCTTGACCTGCTGATTCCAAAAACATTATTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCCAAAATATCCGTCTGGTGGATTCAGATGGGAATGATGAGGTGACAGAAGGAAGGCTTGAGGTTCTGGTGGATGAGCAATGGGGTACTGTATGTAATCGAAGTTGGACACCCCAGTTGACCATTCTGGCTTGTAATCAATTGGGATTAGTCGCTGATGTGCAGTATTTTGAGAATTGGAGGATTTTCCCAGAGGCTGGAGATCTTCCAATGGTTATGGATAATATAAGATGCGAGGAGAATGAAGTGGATATTACAAGATGCAGACATGATGGAATTGAGAGAAATTGTGCAGCTGGGTGCAGGGGTACTGAGGTTGTTGGTGAGTTTCTAGGAATATTTTTTCTTTGGAATGTTGATTCAAATCCTCCCGGTTTTCTGATTCCGAAAACATTGATTTTGTCAGGTTTGAACAAAAATGAAACAAGTTACATGCCTAAATGTGATTTCGATTTTTTTGAAATTTCAAAAACATTCAATTTTTTGAAAAATCTGTCATGTTTATACTCATTCAAATTGTCTTGACCTGCTGATTCCAAAAACATTATTTTCAACCTTCTATCTCAAAAACTAACAGAGCTGCAGTACAATTTACAAAGGGGCGCCGCGCGCTGTCTAGCTTCTCTGCATTCTCTCACTCATTTTACGTTTTTGGCTATATCTTGGCTCAAAGTAGTTCAATTTTAATGAAAACTATATTTTTGGAATTAGCAATACAAGACGGTTTTAACGAATATAAACAGAACATAGTTTTGTAAAAAAAATTGAAACTTTTTGGAATTTTGAAAAACTTTCAAAAATGATCGCAGACTTGACAATTTTATACTCATTTGATCCTCCTAATTTGCTGATTTCAAATAAATAATCAAAAATCTTCTATCTCAAAAACTGACCAAGTTACAGTATCATTTGAAAGAGGGCGACGCGCGCCCTCTAGCTTCTCTGCGCTCTCTCACCCGCCTTACGTATTTGGCTATATCTCGGCTCAGAGTTGCTCAAA</canonical>
            <polymorphic>CGCCAAAATATCCGTCTGGTGGATTCAGATGGGAATGATGAGGTGACAGAAGGAAGGCTTGAGGTTCTGGTGGATGAGCAATGGGGTACTGTATGTAATCGAAGTTGGACACCCCAGTTGACCATTCTGGCTTGTAATCAATTGGGATTAGTCGCTGATGTGCAGTATTTTGAGAATTGGAGGATTTTCCCAGAGGCTGGAGATCTTCCAATGGTTATGGATAATATAAGATGCGAGGAGAATGAAGTGGATATTACAAGATGCAGACATGATGGAATTGAGAGAAATTGTGCAGCTGGGTGCAGGGGTACTGAGGTTGTTGGTGAGTTTCTAGGAATATTTTTTCTTTGGAATGTTGATTCAAATCCTCCCGGTTTTCTGATTCCGAAAACATTGATTTTGTCAGGTTTGAACAAAAATGAAACAAGTTACATGCCTAAATGTGATTTCGATTTTTTTGAAATTTCAAAAACATTCAATTTTTTGAAAAATCTGTCATRTTTATACTCATTCAAATTGTCTTGACCTGCTGATTCCAAAAACATTATTTTCAACCTTCTATCTCAAAAACTAACAGAGCTGCAGTACAATTTACAAAGGGGCGCCGCGCGCTGTCTAGCTTCTCTGCATTCTCTCACTCATTTTACGTTTTTGGCTATATCTTGGCTCAAAGTAGTTCAATTTTAATGAAAACTATATTTTTGGAATTAGCAATACAAGACGGTTTTAACGAATATAAACAGAACATAGTTTTGTAAAAAAAATTGAAACTTTTTGGAATTTTGAAAAACTTTCAAAAATGATCGCAGACTTGACAATTTTATACTCATTTGATCCTCCTAATTTGCTGATTTCAAATAAATAATCAAAAATCTTCTATCTCAAAAACTGACCAAGTTACAGTATCATTTGAAAGAGGGCGACGCGCGCCCTCTAGCTTCTCTGCGCTCTCTCACCCGCCTTACGTATTTGGCTATATCTCGGCTCAGAGTTGCTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 268 164 65</canonical_bands>
                <polymorphic_bands>568 268 164</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTACATGCCTAAATGTGATTTC</pcr_primer_p1>
		<pcr_primer_p2>AAGCGGTAAAAATGAGTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>667</pcr_amplicon_size>
		<canonical_amplicon>GTTACATGCCTAAATGTGATTTCGATTTTTTTGAAATTTCAAAAACATTCAATTTTTTGAAAAATCTGTCATGTTTATACTCATTCAAATTGT</canonical_amplicon>
		<polymorphic_amplicon>GTTACATGCCTAAATGTGATTTCGATTTTTTTGAAATTTCAAAAACATTCAATTTTTTGAAAAATCTGTCATRTTTATACTCATTCAAATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31946</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>123508</contig_pos>
        <strand></strand>
        <context>tttgaaaaaa[A/T]tatttttgta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGCGCAACTTTTGTACACATCTTGGCATGGTCCTGAAATTTTGAAAAAA</left_flank>
        <right_flank>TATTTTTGTATTAATTTTAACAAGGACATTACGCTGATTCTAAAAAAGCC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGTTTGTAAAAACTTATGTAAAACTGATTTAACTTGAGTTTTTGAATTTTCGAATTTTTCAAAAAAAATTGTTTTTTTTTTCCAAAAATTTGGATACTTTCTGTATTTGGACCATAACTTGGCTCGTCTTCATCCGATTTTCAAAATGTTTAGTTTTACAGAATTAGAAAGTTTTGCTTGTCAAAGCAAATGTAAACCTGATAAAATTCCAAGAATATCAAGTTTTTGAAAATGTCCAAAAAACTTCTCTTTTCGAAATTTCGGAATATTTTGATATTTTGGCCATAACTTGGGTCGTTTACAGCCGATTTTCAAAATTTTTCTCGACAAAAATGTATAATTTACGTTTTCCATTATTCCGACACTGTCCACAGGATAAAGCACAGTTATCTGCGAAAAATGGGGAAATTGGACGAGTCCAGTGGCACCGCTCCTCGGATTTCCAGCGAGCGCAACTTTTGTACACATCTTGGCATGGTCCTGAAATTTTGAAAAAAATATTTTTGTATTAATTTTAACAAGGACATTACGCTGATTCTAAAAAAGCCGAAATTTTGAAAATCGGATAAAAATGAAACAAGCTATGGTCCAAATACAAAAATGATCCAAATTTTCGGAAAAAAAATTGTTTTTTGGAATTTTTCAAAAATTCTAAATTACGAAATTGTGTCAGTTTTAGATGCATTTTGTTAAACAAAACTCGCTTATTCAGAAAAACAGACATTTTCAAAAATCGGATGAAAACGAACCAAGTTATGGTCAAAAAACCAAAATGTTCCAAAATTCAAAAAAAAAATTTTTGGAATTTTTCAAAAAAATTCCCCAAATTTGGTCATATTTATATCCATTTTGATCATTTTTAAATTTCTGATTCAGAAATCATATTATTTTCTGAATCTGACAAGACTAGAATGAGTTATAGACCAAAAATTTGAAAAAAAAAAATTATTTTAATAAATTTTCCAACCCGTATAACTCTATCAATTTTCATCCGTTTT</canonical>
            <polymorphic>TTTGTTTGTAAAAACTTATGTAAAACTGATTTAACTTGAGTTTTTGAATTTTCGAATTTTTCAAAAAAAATTGTTTTTTTTTTCCAAAAATTTGGATACTTTCTGTATTTGGACCATAACTTGGCTCGTCTTCATCCGATTTTCAAAATGTTTAGTTTTACAGAATTAGAAAGTTTTGCTTGTCAAAGCAAATGTAAACCTGATAAAATTCCAAGAATATCAAGTTTTTGAAAATGTCCAAAAAACTTCTCTTTTCGAAATTTCGGAATATTTTGATATTTTGGCCATAACTTGGGTCGTTTACAGCCGATTTTCAAAATTTTTCTCGACAAAAATGTATAATTTACGTTTTCCATTATTCCGACACTGTCCACAGGATAAAGCACAGTTATCTGCGAAAAATGGGGAAATTGGACGAGTCCAGTGGCACCGCTCCTCGGATTTCCAGCGAGCGCAACTTTTGTACACATCTTGGCATGGTCCTGAAATTTTGAAAAAAWTATTTTTGTATTAATTTTAACAAGGACATTACGCTGATTCTAAAAAAGCCGAAATTTTGAAAATCGGATAAAAATGAAACAAGCTATGGTCCAAATACAAAAATGATCCAAATTTTCGGAAAAAAAATTGTTTTTTGGAATTTTTCAAAAATTCTAAATTACGAAATTGTGTCAGTTTTAGATGCATTTTGTTAAACAAAACTCGCTTATTCAGAAAAACAGACATTTTCAAAAATCGGATGAAAACGAACCAAGTTATGGTCAAAAAACCAAAATGTTCCAAAATTCAAAAAAAAAATTTTTGGAATTTTTCAAAAAAATTCCCCAAATTTGGTCATATTTATATCCATTTTGATCATTTTTAAATTTCTGATTCAGAAATCATATTATTTTCTGAATCTGACAAGACTAGAATGAGTTATAGACCAAAAATTTGAAAAAAAAAAATTATTTTAATAAATTTTCCAACCCGTATAACTCTATCAATTTTCATCCGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 269 232</canonical_bands>
                <polymorphic_bands>731 269</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACAGGATAAAGCACAGTTAT</pcr_primer_p1>
		<pcr_primer_p2>AATTTGGATCATTTTTGTATTTG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CCACAGGATAAAGCACAGTTATCTGCGAAAAATGGGGAAATTGGACGAGTCCAGTGGCACCGCTCCTCGGATTTCCAGCGAGCGCAACTTTTGTACACATCTTGGCATGGTCCTGAAATTTTGAAAAAAATATTTTTGTATTAATTTTAACAAGGACATTACGCTGATTCTAAAAAAGCCGAAATTTTGAAAATCGGATAAAAATGAAACAAGCTATGGTCCAAATACAAAAATGATCCAAATT</canonical_amplicon>
		<polymorphic_amplicon>CCACAGGATAAAGCACAGTTATCTGCGAAAAATGGGGAAATTGGACGAGTCCAGTGGCACCGCTCCTCGGATTTCCAGCGAGCGCAACTTTTGTACACATCTTGGCATGGTCCTGAAATTTTGAAAAAAWTATTTTTGTATTAATTTTAACAAGGACATTACGCTGATTCTAAAAAAGCCGAAATTTTGAAAATCGGATAAAAATGAAACAAGCTATGGTCCAAATACAAAAATGATCCAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31947</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>123746</contig_pos>
        <strand>+</strand>
        <context>TTCAAAAATC[A/G]GATGAAAACG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGTTAAACAAAACTCGCTTATTCAGAAAAACAGACATTTTCAAAAATC</left_flank>
        <right_flank>GATGAAAACGAACCAAGTTATGGTCAAAAAACCAAAATGTTCCAAAATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAAACTTCTCTTTTCGAAATTTCGGAATATTTTGATATTTTGGCCATAACTTGGGTCGTTTACAGCCGATTTTCAAAATTTTTCTCGACAAAAATGTATAATTTACGTTTTCCATTATTCCGACACTGTCCACAGGATAAAGCACAGTTATCTGCGAAAAATGGGGAAATTGGACGAGTCCAGTGGCACCGCTCCTCGGATTTCCAGCGAGCGCAACTTTTGTACACATCTTGGCATGGTCCTGAAATTTTGAAAAAAATATTTTTGTATTAATTTTAACAAGGACATTACGCTGATTCTAAAAAAGCCGAAATTTTGAAAATCGGATAAAAATGAAACAAGCTATGGTCCAAATACAAAAATGATCCAAATTTTCGGAAAAAAAATTGTTTTTTGGAATTTTTCAAAAATTCTAAATTACGAAATTGTGTCAGTTTTAGATGCATTTTGTTAAACAAAACTCGCTTATTCAGAAAAACAGACATTTTCAAAAATCGGATGAAAACGAACCAAGTTATGGTCAAAAAACCAAAATGTTCCAAAATTCAAAAAAAAAATTTTTGGAATTTTTCAAAAAAATTCCCCAAATTTGGTCATATTTATATCCATTTTGATCATTTTTAAATTTCTGATTCAGAAATCATATTATTTTCTGAATCTGACAAGACTAGAATGAGTTATAGACCAAAAATTTGAAAAAAAAAAATTATTTTAATAAATTTTCCAACCCGTATAACTCTATCAATTTTCATCCGTTTTTTTGGATTTTAGTATCAAAATGTCCCAAATATTTCGAACTATTCAAGATTCTAAAATTTTCCTCAAAAGAAATTGACCTACTTTGACACATTCTGCCCATAAACCCATTTGGGCACTCGCATCGATTTCCAAGCGAAAGCTCAACACATTTTCCACCAATTCCACACGATCTTGGCTCCGTTGGAGAGCAGAAATCGATTACTGTAATTTTCAGAGATTTAACGAGAATTTGAATTGC</canonical>
            <polymorphic>CAAAAAACTTCTCTTTTCGAAATTTCGGAATATTTTGATATTTTGGCCATAACTTGGGTCGTTTACAGCCGATTTTCAAAATTTTTCTCGACAAAAATGTATAATTTACGTTTTCCATTATTCCGACACTGTCCACAGGATAAAGCACAGTTATCTGCGAAAAATGGGGAAATTGGACGAGTCCAGTGGCACCGCTCCTCGGATTTCCAGCGAGCGCAACTTTTGTACACATCTTGGCATGGTCCTGAAATTTTGAAAAAAATATTTTTGTATTAATTTTAACAAGGACATTACGCTGATTCTAAAAAAGCCGAAATTTTGAAAATCGGATAAAAATGAAACAAGCTATGGTCCAAATACAAAAATGATCCAAATTTTCGGAAAAAAAATTGTTTTTTGGAATTTTTCAAAAATTCTAAATTACGAAATTGTGTCAGTTTTAGATGCATTTTGTTAAACAAAACTCGCTTATTCAGAAAAACAGACATTTTCAAAAATCRGATGAAAACGAACCAAGTTATGGTCAAAAAACCAAAATGTTCCAAAATTCAAAAAAAAAATTTTTGGAATTTTTCAAAAAAATTCCCCAAATTTGGTCATATTTATATCCATTTTGATCATTTTTAAATTTCTGATTCAGAAATCATATTATTTTCTGAATCTGACAAGACTAGAATGAGTTATAGACCAAAAATTTGAAAAAAAAAAATTATTTTAATAAATTTTCCAACCCGTATAACTCTATCAATTTTCATCCGTTTTTTTGGATTTTAGTATCAAAATGTCCCAAATATTTCGAACTATTCAAGATTCTAAAATTTTCCTCAAAAGAAATTGACCTACTTTGACACATTCTGCCCATAAACCCATTTGGGCACTCGCATCGATTTCCAAGCGAAAGCTCAACACATTTTCCACCAATTCCACACGATCTTGGCTCCGTTGGAGAGCAGAAATCGATTACTGTAATTTTCAGAGATTTAACGAGAATTTGAATTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAGTTTTAGATGCATTTTGTT</pcr_primer_p1>
		<pcr_primer_p2>CTCATTCTAGTCTTGTCAGATTCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTCAGTTTTAGATGCATTTTGTTAAACAAAACTCGCTTATTCAGAAAAACAGACATTTTCAAAAATCGGATGAAAACGAACCAAGTTATGGTCAAAAAACCAAAATGTTCCAAAATTCAAAAAAAAAATTTTTGGAATTTTTCAAAAAAATTCCCCAAATTTGGTCATATTTATATCCATTTTGATCATTTTTAAATTTCTGATTCAGAAATCATATTATTTTCTGAATCTGACAAGACTAGAATGAG</canonical_amplicon>
		<polymorphic_amplicon>GTCAGTTTTAGATGCATTTTGTTAAACAAAACTCGCTTATTCAGAAAAACAGACATTTTCAAAAATCRGATGAAAACGAACCAAGTTATGGTCAAAAAACCAAAATGTTCCAAAATTCAAAAAAAAAATTTTTGGAATTTTTCAAAAAAATTCCCCAAATTTGGTCATATTTATATCCATTTTGATCATTTTTAAATTTCTGATTCAGAAATCATATTATTTTCTGAATCTGACAAGACTAGAATGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31948</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>129154</contig_pos>
        <strand></strand>
        <context>attttttttt[T/A]aatttttCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTGAAAAAAAACAGAAAAATGAGATTTTTCTTTAAAAAAATTTTTTTTT</left_flank>
        <right_flank>AATTTTTCTAAAACCTAGATTTTTGGCAGAAGTACCTCATGAAAATTAAC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACTTTTTTCTTTTTTTACCTGAAATATTGGTTTTTAGCTCAAAAAATTGGAAATTTATTTTTCTTAAAAACAAACCAGAATCTTATGAAATTGGGCTCAGATGACGGTACCTACAGTCAATTTTCTGAAGCCCACTTTTTTTTTTGGAAATTTCTAGTTTTCCGGAATTTCCAGGTCCCATAACTTCATTCATTTTGGACCTAGAAGCTTGGTTTTGGCTCAAAAAACTGGAAATTTCTTCGTTGTCTATATAAATATAAATTTCCAAAAATTTGGTCAAGATTACGGTACCTGTTGCCAGTTTACTCATGCTCACTTGGGGCGATTAAACGCGAGATGGCGCAGTTGGTAAGAGAGGTGTTCTTGAGGAGAACGGTCAAAAGTTCGATTTTTTTTGGGTCCAAAACTTTTTTGCAAGGTTTTTGGGGACAGGAAATTTTGAAAAAATTTGAAAAAAAACAGAAAAATGAGATTTTTCTTTAAAAAAATTTTTTTTTTAATTTTTCTAAAACCTAGATTTTTGGCAGAAGTACCTCATGAAAATTAACAACAGTCCTTTTAAAAAGTTTGAAAATTTTTGAAAAAGTTCGAAAATTTTTGTTTTCATTTGAAATTCTCAAAATTTCAAAACCCCATAACTTTCTTCATTTTTGACATGGAAATTTGGTTTTTTGCTCAAAAAATAGGAAATTTCTTTTTCTTTAAAATAAATTTGAATTCTAAAAAATTTAGCTCAGATTAAGGTAGATATAGTTGACTTCATTTTTTGATAGTTAGAAATTTTCAAAGCCCCATAACTTTTTTCATTTTTTACCTAGAACATTGATGTTTAGCTCAAAAAATAGGAAATTTTTTCTTCTTTGAAACAAATATAAATTGTTTAAAAATTCCGCTCAAATTACGGTACCTACACTCACTTTTCTCAAGCTGACTTTTTTTAGCTTCAAGCTTTTTTTGAAAAATTTCAAAATCCTATAACTTTCTTCATTTTTGACCTA</canonical>
            <polymorphic>TAACTTTTTTCTTTTTTTACCTGAAATATTGGTTTTTAGCTCAAAAAATTGGAAATTTATTTTTCTTAAAAACAAACCAGAATCTTATGAAATTGGGCTCAGATGACGGTACCTACAGTCAATTTTCTGAAGCCCACTTTTTTTTTTGGAAATTTCTAGTTTTCCGGAATTTCCAGGTCCCATAACTTCATTCATTTTGGACCTAGAAGCTTGGTTTTGGCTCAAAAAACTGGAAATTTCTTCGTTGTCTATATAAATATAAATTTCCAAAAATTTGGTCAAGATTACGGTACCTGTTGCCAGTTTACTCATGCTCACTTGGGGCGATTAAACGCGAGATGGCGCAGTTGGTAAGAGAGGTGTTCTTGAGGAGAACGGTCAAAAGTTCGATTTTTTTTGGGTCCAAAACTTTTTTGCAAGGTTTTTGGGGACAGGAAATTTTGAAAAAATTTGAAAAAAAACAGAAAAATGAGATTTTTCTTTAAAAAAATTTTTTTTTWAATTTTTCTAAAACCTAGATTTTTGGCAGAAGTACCTCATGAAAATTAACAACAGTCCTTTTAAAAAGTTTGAAAATTTTTGAAAAAGTTCGAAAATTTTTGTTTTCATTTGAAATTCTCAAAATTTCAAAACCCCATAACTTTCTTCATTTTTGACATGGAAATTTGGTTTTTTGCTCAAAAAATAGGAAATTTCTTTTTCTTTAAAATAAATTTGAATTCTAAAAAATTTAGCTCAGATTAAGGTAGATATAGTTGACTTCATTTTTTGATAGTTAGAAATTTTCAAAGCCCCATAACTTTTTTCATTTTTTACCTAGAACATTGATGTTTAGCTCAAAAAATAGGAAATTTTTTCTTCTTTGAAACAAATATAAATTGTTTAAAAATTCCGCTCAAATTACGGTACCTACACTCACTTTTCTCAAGCTGACTTTTTTTAGCTTCAAGCTTTTTTTGAAAAATTTCAAAATCCTATAACTTTCTTCATTTTTGACCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>262 154 143 142 117 66 47 37 17 15</canonical_bands>
                <polymorphic_bands>262 154 143 142 117 66 64 37 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAGTTTACTCATGCTCACTT</pcr_primer_p1>
		<pcr_primer_p2>ACTGTTGTTAATTTTCATGAGGT</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>CCAGTTTACTCATGCTCACTTGGGGCGATTAAACGCGAGATGGCGCAGTTGGTAAGAGAGGTGTTCTTGAGGAGAACGGTCAAAAGTTCGATTTTTTTTGGGTCCAAAACTTTTTTGCAAGGTTTTTGGGGACAGGAAATTTTGAAAAAATTTGAAAAAAAACAGAAAAATGAGATTTTTCTTTAAAAAAATTTTTTTTTTAATTTTTCTAAAACCTAGATTTTTGGCAGAAGTACCTCATGAAAATTAACAACAGT</canonical_amplicon>
		<polymorphic_amplicon>CCAGTTTACTCATGCTCACTTGGGGCGATTAAACGCGAGATGGCGCAGTTGGTAAGAGAGGTGTTCTTGAGGAGAACGGTCAAAAGTTCGATTTTTTTTGGGTCCAAAACTTTTTTGCAAGGTTTTTGGGGACAGGAAATTTTGAAAAAATTTGAAAAAAAACAGAAAAATGAGATTTTTCTTTAAAAAAATTTTTTTTTWAATTTTTCTAAAACCTAGATTTTTGGCAGAAGTACCTCATGAAAATTAACAACAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31949</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>129506</contig_pos>
        <strand>+</strand>
        <context>aaataggaaa[A/G]tTTTTCTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTCATTTTTTACCTAGAACATTGATGTTTAGCTCAAAAAATAGGAAA</left_flank>
        <right_flank>TTTTTCTTCTTTGAAACAAATATAAATTGTTTAAAAATTCCGCTCAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAGAGGTGTTCTTGAGGAGAACGGTCAAAAGTTCGATTTTTTTTGGGTCCAAAACTTTTTTGCAAGGTTTTTGGGGACAGGAAATTTTGAAAAAATTTGAAAAAAAACAGAAAAATGAGATTTTTCTTTAAAAAAATTTTTTTTTTAATTTTTCTAAAACCTAGATTTTTGGCAGAAGTACCTCATGAAAATTAACAACAGTCCTTTTAAAAAGTTTGAAAATTTTTGAAAAAGTTCGAAAATTTTTGTTTTCATTTGAAATTCTCAAAATTTCAAAACCCCATAACTTTCTTCATTTTTGACATGGAAATTTGGTTTTTTGCTCAAAAAATAGGAAATTTCTTTTTCTTTAAAATAAATTTGAATTCTAAAAAATTTAGCTCAGATTAAGGTAGATATAGTTGACTTCATTTTTTGATAGTTAGAAATTTTCAAAGCCCCATAACTTTTTTCATTTTTTACCTAGAACATTGATGTTTAGCTCAAAAAATAGGAAATTTTTTCTTCTTTGAAACAAATATAAATTGTTTAAAAATTCCGCTCAAATTACGGTACCTACACTCACTTTTCTCAAGCTGACTTTTTTTAGCTTCAAGCTTTTTTTGAAAAATTTCAAAATCCTATAACTTTCTTCATTTTTGACCTAGAAATTTGATTTTTAGATTGAAAAGCGATAAATTTCATTGTCTCTTAGATTATGTAAATATTCACACAATTCCTGAACTTTTTGATTCTGAAAATGCACTATTTTTAGAGCCGACTACTTTTTAGTGGCACCAAATATTCAAATTGCCTTATCTCAGCTCAAAATGCTTCAAACCGCATGGTTTTTGGCTTAAAATGTCAGAAATTGCCCCTTCTTTTCGCAACGCTATAAAACATTACCACTAAATACAGCTTAAATATCAAAAATCCTACTATTTAACCCCAAAAAGTGCAAATTCCACCGCAAGCAATTTTCAGTCTAAACTTCAACGACGCTGTCAAACTCCAATCCA</canonical>
            <polymorphic>AAGAGAGGTGTTCTTGAGGAGAACGGTCAAAAGTTCGATTTTTTTTGGGTCCAAAACTTTTTTGCAAGGTTTTTGGGGACAGGAAATTTTGAAAAAATTTGAAAAAAAACAGAAAAATGAGATTTTTCTTTAAAAAAATTTTTTTTTTAATTTTTCTAAAACCTAGATTTTTGGCAGAAGTACCTCATGAAAATTAACAACAGTCCTTTTAAAAAGTTTGAAAATTTTTGAAAAAGTTCGAAAATTTTTGTTTTCATTTGAAATTCTCAAAATTTCAAAACCCCATAACTTTCTTCATTTTTGACATGGAAATTTGGTTTTTTGCTCAAAAAATAGGAAATTTCTTTTTCTTTAAAATAAATTTGAATTCTAAAAAATTTAGCTCAGATTAAGGTAGATATAGTTGACTTCATTTTTTGATAGTTAGAAATTTTCAAAGCCCCATAACTTTTTTCATTTTTTACCTAGAACATTGATGTTTAGCTCAAAAAATAGGAAARTTTTTCTTCTTTGAAACAAATATAAATTGTTTAAAAATTCCGCTCAAATTACGGTACCTACACTCACTTTTCTCAAGCTGACTTTTTTTAGCTTCAAGCTTTTTTTGAAAAATTTCAAAATCCTATAACTTTCTTCATTTTTGACCTAGAAATTTGATTTTTAGATTGAAAAGCGATAAATTTCATTGTCTCTTAGATTATGTAAATATTCACACAATTCCTGAACTTTTTGATTCTGAAAATGCACTATTTTTAGAGCCGACTACTTTTTAGTGGCACCAAATATTCAAATTGCCTTATCTCAGCTCAAAATGCTTCAAACCGCATGGTTTTTGGCTTAAAATGTCAGAAATTGCCCCTTCTTTTCGCAACGCTATAAAACATTACCACTAAATACAGCTTAAATATCAAAAATCCTACTATTTAACCCCAAAAAGTGCAAATTCCACCGCAAGCAATTTTCAGTCTAAACTTCAACGACGCTGTCAAACTCCAATCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>263 86 84 75 69 59 53 41 40 40 38 28 28 21 20 19 11 10 9 6</canonical_bands>
                <polymorphic_bands>263 107 86 84 75 59 53 41 40 40 28 28 21 20 19 11 10 9 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>91 84 74 69 64 61 53 44 43 41 40 40 37 31 28 28 27 21 20 19 15 12 11 11 11 10 9 6</canonical_bands>
                <polymorphic_bands>96 91 84 74 64 61 53 44 43 41 40 40 37 31 28 28 21 20 19 15 12 11 11 11 10 9 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGACATGGAAATTTGGTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGTGAGTGTAGGTACCGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>270</pcr_amplicon_size>
		<canonical_amplicon>TGACATGGAAATTTGGTTTTTTGCTCAAAAAATAGGAAATTTCTTTTTCTTTAAAATAAATTTGAATTCTAAAAAATTTAGCTCAGATTAAGGTAGATATAGTTGACTTCATTTTTTGATAGTTAGAAATTTTCAAAGCCCCATAACTTTTTTCATTTTTTACCTAGAACATTGATGTTTAGCTCAAAAAATAGGAAATTTTTTCTTCTTTGAAACAAATATAAATTGTTTAAAAATTCCGCTCAAATTACGGTACCTACACTCACTTTT</canonical_amplicon>
		<polymorphic_amplicon>TGACATGGAAATTTGGTTTTTTGCTCAAAAAATAGGAAATTTCTTTTTCTTTAAAATAAATTTGAATTCTAAAAAATTTAGCTCAGATTAAGGTAGATATAGTTGACTTCATTTTTTGATAGTTAGAAATTTTCAAAGCCCCATAACTTTTTTCATTTTTTACCTAGAACATTGATGTTTAGCTCAAAAAATAGGAAARTTTTTCTTCTTTGAAACAAATATAAATTGTTTAAAAATTCCGCTCAAATTACGGTACCTACACTCACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31950</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>151131</contig_pos>
        <strand>+</strand>
        <context>ttttgaaaat[C/G]aaatttttaa</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAAT</left_flank>
        <right_flank>AAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTTCTTCACAATCTATATCTCAAAACGAACATACTAACATAAATTGGAAATATTGGAACAGCCATATGGATAATCACATATATGGAAGCGAATTCATTGATTGTAGTGATGCCTCCGAGGATTCCTGATTTCTCGGATTCCAAATGATATTCTGGGAAGAATTTGGTGGCAAGGGGAAGGATTTCCTCACGATCAACTACAGTAGGCCAGTAGATGATCTGGAAGAAAATAAAAACTAGCAAAAAACTTTGAAACCCAAAGGAATCGAACTTTTGACCCTTCTTCTCCATAGACACCTCTCTTACGTCTTGAGCTACCGCGGCGCCCACGGGGCGCCTAGGTGTGCAGGGGTGGCGCAGAGGATAAGAGGGAGGAACTTGGAGCAGAATGGTCAAAAGTTCGATTTCTTAGGGTTCTAAAGTGTTTTGCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAACGGTTATTTTTCGAGATTTGAAGTGACAAATTTCCAGAAAAAGCTTCAATGTGTGTCAAAACATTCGGAATTTCAAAAAAAAAAAAAATTCAGATTTTCAGAAATATTCAAATTTTCTGAAAATTTGAAACATGGTAGGTGTCGTACCGCCTGAAACAAGCTAGGTGTATAAATGATAAAAACAATGAGGATGAGCCATTTTCGGGATAATGGGGACTTGTGAAGAATATAATATCTATAGGAGAACGATAATAATAGGGACCATGTCGTGTGTGGGAAGCAGTGATAGAACAGGGAGAGGCTGAAATTTTCTTTTTGGCTG</canonical>
            <polymorphic>AACTTCTTCACAATCTATATCTCAAAACGAACATACTAACATAAATTGGAAATATTGGAACAGCCATATGGATAATCACATATATGGAAGCGAATTCATTGATTGTAGTGATGCCTCCGAGGATTCCTGATTTCTCGGATTCCAAATGATATTCTGGGAAGAATTTGGTGGCAAGGGGAAGGATTTCCTCACGATCAACTACAGTAGGCCAGTAGATGATCTGGAAGAAAATAAAAACTAGCAAAAAACTTTGAAACCCAAAGGAATCGAACTTTTGACCCTTCTTCTCCATAGACACCTCTCTTACGTCTTGAGCTACCGCGGCGCCCACGGGGCGCCTAGGTGTGCAGGGGTGGCGCAGAGGATAAGAGGGAGGAACTTGGAGCAGAATGGTCAAAAGTTCGATTTCTTAGGGTTCTAAAGTGTTTTGCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATSAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAACGGTTATTTTTCGAGATTTGAAGTGACAAATTTCCAGAAAAAGCTTCAATGTGTGTCAAAACATTCGGAATTTCAAAAAAAAAAAAAATTCAGATTTTCAGAAATATTCAAATTTTCTGAAAATTTGAAACATGGTAGGTGTCGTACCGCCTGAAACAAGCTAGGTGTATAAATGATAAAAACAATGAGGATGAGCCATTTTCGGGATAATGGGGACTTGTGAAGAATATAATATCTATAGGAGAACGATAATAATAGGGACCATGTCGTGTGTGGGAAGCAGTGATAGAACAGGGAGAGGCTGAAATTTTCTTTTTGGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>499 338 155 8</canonical_bands>
                <polymorphic_bands>507 338 155</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>312 184 130 69 62 49 43 40 24 18 17 14 13 11 9 5</canonical_bands>
                <polymorphic_bands>312 184 130 69 62 49 43 40 24 18 17 14 14 13 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTAGTTTTGAAAGTTAGGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCAAATACATTTTTAAACTGAACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATSAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31951</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>151151</contig_pos>
        <strand>+</strand>
        <context>aaCGGAATTT[A/G]TTGTTTCGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTT</left_flank>
        <right_flank>TTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAAAACGAACATACTAACATAAATTGGAAATATTGGAACAGCCATATGGATAATCACATATATGGAAGCGAATTCATTGATTGTAGTGATGCCTCCGAGGATTCCTGATTTCTCGGATTCCAAATGATATTCTGGGAAGAATTTGGTGGCAAGGGGAAGGATTTCCTCACGATCAACTACAGTAGGCCAGTAGATGATCTGGAAGAAAATAAAAACTAGCAAAAAACTTTGAAACCCAAAGGAATCGAACTTTTGACCCTTCTTCTCCATAGACACCTCTCTTACGTCTTGAGCTACCGCGGCGCCCACGGGGCGCCTAGGTGTGCAGGGGTGGCGCAGAGGATAAGAGGGAGGAACTTGGAGCAGAATGGTCAAAAGTTCGATTTCTTAGGGTTCTAAAGTGTTTTGCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAACGGTTATTTTTCGAGATTTGAAGTGACAAATTTCCAGAAAAAGCTTCAATGTGTGTCAAAACATTCGGAATTTCAAAAAAAAAAAAAATTCAGATTTTCAGAAATATTCAAATTTTCTGAAAATTTGAAACATGGTAGGTGTCGTACCGCCTGAAACAAGCTAGGTGTATAAATGATAAAAACAATGAGGATGAGCCATTTTCGGGATAATGGGGACTTGTGAAGAATATAATATCTATAGGAGAACGATAATAATAGGGACCATGTCGTGTGTGGGAAGCAGTGATAGAACAGGGAGAGGCTGAAATTTTCTTTTTGGCTGAAAATCAAAAAACAAAAAAA</canonical>
            <polymorphic>CTCAAAACGAACATACTAACATAAATTGGAAATATTGGAACAGCCATATGGATAATCACATATATGGAAGCGAATTCATTGATTGTAGTGATGCCTCCGAGGATTCCTGATTTCTCGGATTCCAAATGATATTCTGGGAAGAATTTGGTGGCAAGGGGAAGGATTTCCTCACGATCAACTACAGTAGGCCAGTAGATGATCTGGAAGAAAATAAAAACTAGCAAAAAACTTTGAAACCCAAAGGAATCGAACTTTTGACCCTTCTTCTCCATAGACACCTCTCTTACGTCTTGAGCTACCGCGGCGCCCACGGGGCGCCTAGGTGTGCAGGGGTGGCGCAGAGGATAAGAGGGAGGAACTTGGAGCAGAATGGTCAAAAGTTCGATTTCTTAGGGTTCTAAAGTGTTTTGCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTRTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAACGGTTATTTTTCGAGATTTGAAGTGACAAATTTCCAGAAAAAGCTTCAATGTGTGTCAAAACATTCGGAATTTCAAAAAAAAAAAAAATTCAGATTTTCAGAAATATTCAAATTTTCTGAAAATTTGAAACATGGTAGGTGTCGTACCGCCTGAAACAAGCTAGGTGTATAAATGATAAAAACAATGAGGATGAGCCATTTTCGGGATAATGGGGACTTGTGAAGAATATAATATCTATAGGAGAACGATAATAATAGGGACCATGTCGTGTGTGGGAAGCAGTGATAGAACAGGGAGAGGCTGAAATTTTCTTTTTGGCTGAAAATCAAAAAACAAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAGTTTTGAAAGTTAGGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCAAATACATTTTTAAACTGAACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTRTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31952</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>151172</contig_pos>
        <strand>+</strand>
        <context>AAGYTRTAGT[A/G]CCAAAAATYG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGT</left_flank>
        <right_flank>CCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAATTGGAAATATTGGAACAGCCATATGGATAATCACATATATGGAAGCGAATTCATTGATTGTAGTGATGCCTCCGAGGATTCCTGATTTCTCGGATTCCAAATGATATTCTGGGAAGAATTTGGTGGCAAGGGGAAGGATTTCCTCACGATCAACTACAGTAGGCCAGTAGATGATCTGGAAGAAAATAAAAACTAGCAAAAAACTTTGAAACCCAAAGGAATCGAACTTTTGACCCTTCTTCTCCATAGACACCTCTCTTACGTCTTGAGCTACCGCGGCGCCCACGGGGCGCCTAGGTGTGCAGGGGTGGCGCAGAGGATAAGAGGGAGGAACTTGGAGCAGAATGGTCAAAAGTTCGATTTCTTAGGGTTCTAAAGTGTTTTGCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAACGGTTATTTTTCGAGATTTGAAGTGACAAATTTCCAGAAAAAGCTTCAATGTGTGTCAAAACATTCGGAATTTCAAAAAAAAAAAAAATTCAGATTTTCAGAAATATTCAAATTTTCTGAAAATTTGAAACATGGTAGGTGTCGTACCGCCTGAAACAAGCTAGGTGTATAAATGATAAAAACAATGAGGATGAGCCATTTTCGGGATAATGGGGACTTGTGAAGAATATAATATCTATAGGAGAACGATAATAATAGGGACCATGTCGTGTGTGGGAAGCAGTGATAGAACAGGGAGAGGCTGAAATTTTCTTTTTGGCTGAAAATCAAAAAACAAAAAAAAATTCGAAAAGACATTTTTTT</canonical>
            <polymorphic>TAAATTGGAAATATTGGAACAGCCATATGGATAATCACATATATGGAAGCGAATTCATTGATTGTAGTGATGCCTCCGAGGATTCCTGATTTCTCGGATTCCAAATGATATTCTGGGAAGAATTTGGTGGCAAGGGGAAGGATTTCCTCACGATCAACTACAGTAGGCCAGTAGATGATCTGGAAGAAAATAAAAACTAGCAAAAAACTTTGAAACCCAAAGGAATCGAACTTTTGACCCTTCTTCTCCATAGACACCTCTCTTACGTCTTGAGCTACCGCGGCGCCCACGGGGCGCCTAGGTGTGCAGGGGTGGCGCAGAGGATAAGAGGGAGGAACTTGGAGCAGAATGGTCAAAAGTTCGATTTCTTAGGGTTCTAAAGTGTTTTGCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTRCCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAACGGTTATTTTTCGAGATTTGAAGTGACAAATTTCCAGAAAAAGCTTCAATGTGTGTCAAAACATTCGGAATTTCAAAAAAAAAAAAAATTCAGATTTTCAGAAATATTCAAATTTTCTGAAAATTTGAAACATGGTAGGTGTCGTACCGCCTGAAACAAGCTAGGTGTATAAATGATAAAAACAATGAGGATGAGCCATTTTCGGGATAATGGGGACTTGTGAAGAATATAATATCTATAGGAGAACGATAATAATAGGGACCATGTCGTGTGTGGGAAGCAGTGATAGAACAGGGAGAGGCTGAAATTTTCTTTTTGGCTGAAAATCAAAAAACAAAAAAAAATTCGAAAAGACATTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 218 195 80 8</canonical_bands>
                <polymorphic_bands>579 218 195 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTAGTTTTGAAAGTTAGGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCAAATACATTTTTAAACTGAACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTRCCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31953</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>151181</contig_pos>
        <strand>+</strand>
        <context>TRCCAAAAAT[C/T]GAACTTTCYC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAAT</left_flank>
        <right_flank>GAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATATTGGAACAGCCATATGGATAATCACATATATGGAAGCGAATTCATTGATTGTAGTGATGCCTCCGAGGATTCCTGATTTCTCGGATTCCAAATGATATTCTGGGAAGAATTTGGTGGCAAGGGGAAGGATTTCCTCACGATCAACTACAGTAGGCCAGTAGATGATCTGGAAGAAAATAAAAACTAGCAAAAAACTTTGAAACCCAAAGGAATCGAACTTTTGACCCTTCTTCTCCATAGACACCTCTCTTACGTCTTGAGCTACCGCGGCGCCCACGGGGCGCCTAGGTGTGCAGGGGTGGCGCAGAGGATAAGAGGGAGGAACTTGGAGCAGAATGGTCAAAAGTTCGATTTCTTAGGGTTCTAAAGTGTTTTGCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAACGGTTATTTTTCGAGATTTGAAGTGACAAATTTCCAGAAAAAGCTTCAATGTGTGTCAAAACATTCGGAATTTCAAAAAAAAAAAAAATTCAGATTTTCAGAAATATTCAAATTTTCTGAAAATTTGAAACATGGTAGGTGTCGTACCGCCTGAAACAAGCTAGGTGTATAAATGATAAAAACAATGAGGATGAGCCATTTTCGGGATAATGGGGACTTGTGAAGAATATAATATCTATAGGAGAACGATAATAATAGGGACCATGTCGTGTGTGGGAAGCAGTGATAGAACAGGGAGAGGCTGAAATTTTCTTTTTGGCTGAAAATCAAAAAACAAAAAAAAATTCGAAAAGACATTTTTTTTTGAAAACT</canonical>
            <polymorphic>AATATTGGAACAGCCATATGGATAATCACATATATGGAAGCGAATTCATTGATTGTAGTGATGCCTCCGAGGATTCCTGATTTCTCGGATTCCAAATGATATTCTGGGAAGAATTTGGTGGCAAGGGGAAGGATTTCCTCACGATCAACTACAGTAGGCCAGTAGATGATCTGGAAGAAAATAAAAACTAGCAAAAAACTTTGAAACCCAAAGGAATCGAACTTTTGACCCTTCTTCTCCATAGACACCTCTCTTACGTCTTGAGCTACCGCGGCGCCCACGGGGCGCCTAGGTGTGCAGGGGTGGCGCAGAGGATAAGAGGGAGGAACTTGGAGCAGAATGGTCAAAAGTTCGATTTCTTAGGGTTCTAAAGTGTTTTGCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATYGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAACGGTTATTTTTCGAGATTTGAAGTGACAAATTTCCAGAAAAAGCTTCAATGTGTGTCAAAACATTCGGAATTTCAAAAAAAAAAAAAATTCAGATTTTCAGAAATATTCAAATTTTCTGAAAATTTGAAACATGGTAGGTGTCGTACCGCCTGAAACAAGCTAGGTGTATAAATGATAAAAACAATGAGGATGAGCCATTTTCGGGATAATGGGGACTTGTGAAGAATATAATATCTATAGGAGAACGATAATAATAGGGACCATGTCGTGTGTGGGAAGCAGTGATAGAACAGGGAGAGGCTGAAATTTTCTTTTTGGCTGAAAATCAAAAAACAAAAAAAAATTCGAAAAGACATTTTTTTTTGAAAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>335 218 140 135 81 43 25 23</canonical_bands>
                <polymorphic_bands>335 218 163 135 81 43 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTAGTTTTGAAAGTTAGGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCAAATACATTTTTAAACTGAACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATYGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31954</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>151194</contig_pos>
        <strand>+</strand>
        <context>ACTTTCYCGC[A/C]RTTTTCTRAM</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGC</left_flank>
        <right_flank>GTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATATGGATAATCACATATATGGAAGCGAATTCATTGATTGTAGTGATGCCTCCGAGGATTCCTGATTTCTCGGATTCCAAATGATATTCTGGGAAGAATTTGGTGGCAAGGGGAAGGATTTCCTCACGATCAACTACAGTAGGCCAGTAGATGATCTGGAAGAAAATAAAAACTAGCAAAAAACTTTGAAACCCAAAGGAATCGAACTTTTGACCCTTCTTCTCCATAGACACCTCTCTTACGTCTTGAGCTACCGCGGCGCCCACGGGGCGCCTAGGTGTGCAGGGGTGGCGCAGAGGATAAGAGGGAGGAACTTGGAGCAGAATGGTCAAAAGTTCGATTTCTTAGGGTTCTAAAGTGTTTTGCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAACGGTTATTTTTCGAGATTTGAAGTGACAAATTTCCAGAAAAAGCTTCAATGTGTGTCAAAACATTCGGAATTTCAAAAAAAAAAAAAATTCAGATTTTCAGAAATATTCAAATTTTCTGAAAATTTGAAACATGGTAGGTGTCGTACCGCCTGAAACAAGCTAGGTGTATAAATGATAAAAACAATGAGGATGAGCCATTTTCGGGATAATGGGGACTTGTGAAGAATATAATATCTATAGGAGAACGATAATAATAGGGACCATGTCGTGTGTGGGAAGCAGTGATAGAACAGGGAGAGGCTGAAATTTTCTTTTTGGCTGAAAATCAAAAAACAAAAAAAAATTCGAAAAGACATTTTTTTTTGAAAACTTTTTTCGCCTGCT</canonical>
            <polymorphic>CCATATGGATAATCACATATATGGAAGCGAATTCATTGATTGTAGTGATGCCTCCGAGGATTCCTGATTTCTCGGATTCCAAATGATATTCTGGGAAGAATTTGGTGGCAAGGGGAAGGATTTCCTCACGATCAACTACAGTAGGCCAGTAGATGATCTGGAAGAAAATAAAAACTAGCAAAAAACTTTGAAACCCAAAGGAATCGAACTTTTGACCCTTCTTCTCCATAGACACCTCTCTTACGTCTTGAGCTACCGCGGCGCCCACGGGGCGCCTAGGTGTGCAGGGGTGGCGCAGAGGATAAGAGGGAGGAACTTGGAGCAGAATGGTCAAAAGTTCGATTTCTTAGGGTTCTAAAGTGTTTTGCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCMGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAACGGTTATTTTTCGAGATTTGAAGTGACAAATTTCCAGAAAAAGCTTCAATGTGTGTCAAAACATTCGGAATTTCAAAAAAAAAAAAAATTCAGATTTTCAGAAATATTCAAATTTTCTGAAAATTTGAAACATGGTAGGTGTCGTACCGCCTGAAACAAGCTAGGTGTATAAATGATAAAAACAATGAGGATGAGCCATTTTCGGGATAATGGGGACTTGTGAAGAATATAATATCTATAGGAGAACGATAATAATAGGGACCATGTCGTGTGTGGGAAGCAGTGATAGAACAGGGAGAGGCTGAAATTTTCTTTTTGGCTGAAAATCAAAAAACAAAAAAAAATTCGAAAAGACATTTTTTTTTGAAAACTTTTTTCGCCTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAGTTTTGAAAGTTAGGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCAAATACATTTTTAAACTGAACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCMGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31955</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>151195</contig_pos>
        <strand>+</strand>
        <context>CTTTCYCGCM[A/G]TTTTCTRAMM</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCC</left_flank>
        <right_flank>TTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATATGGATAATCACATATATGGAAGCGAATTCATTGATTGTAGTGATGCCTCCGAGGATTCCTGATTTCTCGGATTCCAAATGATATTCTGGGAAGAATTTGGTGGCAAGGGGAAGGATTTCCTCACGATCAACTACAGTAGGCCAGTAGATGATCTGGAAGAAAATAAAAACTAGCAAAAAACTTTGAAACCCAAAGGAATCGAACTTTTGACCCTTCTTCTCCATAGACACCTCTCTTACGTCTTGAGCTACCGCGGCGCCCACGGGGCGCCTAGGTGTGCAGGGGTGGCGCAGAGGATAAGAGGGAGGAACTTGGAGCAGAATGGTCAAAAGTTCGATTTCTTAGGGTTCTAAAGTGTTTTGCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAACGGTTATTTTTCGAGATTTGAAGTGACAAATTTCCAGAAAAAGCTTCAATGTGTGTCAAAACATTCGGAATTTCAAAAAAAAAAAAAATTCAGATTTTCAGAAATATTCAAATTTTCTGAAAATTTGAAACATGGTAGGTGTCGTACCGCCTGAAACAAGCTAGGTGTATAAATGATAAAAACAATGAGGATGAGCCATTTTCGGGATAATGGGGACTTGTGAAGAATATAATATCTATAGGAGAACGATAATAATAGGGACCATGTCGTGTGTGGGAAGCAGTGATAGAACAGGGAGAGGCTGAAATTTTCTTTTTGGCTGAAAATCAAAAAACAAAAAAAAATTCGAAAAGACATTTTTTTTTGAAAACTTTTTTCGCCTGCTA</canonical>
            <polymorphic>CATATGGATAATCACATATATGGAAGCGAATTCATTGATTGTAGTGATGCCTCCGAGGATTCCTGATTTCTCGGATTCCAAATGATATTCTGGGAAGAATTTGGTGGCAAGGGGAAGGATTTCCTCACGATCAACTACAGTAGGCCAGTAGATGATCTGGAAGAAAATAAAAACTAGCAAAAAACTTTGAAACCCAAAGGAATCGAACTTTTGACCCTTCTTCTCCATAGACACCTCTCTTACGTCTTGAGCTACCGCGGCGCCCACGGGGCGCCTAGGTGTGCAGGGGTGGCGCAGAGGATAAGAGGGAGGAACTTGGAGCAGAATGGTCAAAAGTTCGATTTCTTAGGGTTCTAAAGTGTTTTGCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCRTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAACGGTTATTTTTCGAGATTTGAAGTGACAAATTTCCAGAAAAAGCTTCAATGTGTGTCAAAACATTCGGAATTTCAAAAAAAAAAAAAATTCAGATTTTCAGAAATATTCAAATTTTCTGAAAATTTGAAACATGGTAGGTGTCGTACCGCCTGAAACAAGCTAGGTGTATAAATGATAAAAACAATGAGGATGAGCCATTTTCGGGATAATGGGGACTTGTGAAGAATATAATATCTATAGGAGAACGATAATAATAGGGACCATGTCGTGTGTGGGAAGCAGTGATAGAACAGGGAGAGGCTGAAATTTTCTTTTTGGCTGAAAATCAAAAAACAAAAAAAAATTCGAAAAGACATTTTTTTTTGAAAACTTTTTTCGCCTGCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAGTTTTGAAAGTTAGGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCAAATACATTTTTAAACTGAACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCRTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31956</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>151202</contig_pos>
        <strand>+</strand>
        <context>GCMRTTTTCT[A/G]AMMCGAAAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCT</left_flank>
        <right_flank>ACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAATCACATATATGGAAGCGAATTCATTGATTGTAGTGATGCCTCCGAGGATTCCTGATTTCTCGGATTCCAAATGATATTCTGGGAAGAATTTGGTGGCAAGGGGAAGGATTTCCTCACGATCAACTACAGTAGGCCAGTAGATGATCTGGAAGAAAATAAAAACTAGCAAAAAACTTTGAAACCCAAAGGAATCGAACTTTTGACCCTTCTTCTCCATAGACACCTCTCTTACGTCTTGAGCTACCGCGGCGCCCACGGGGCGCCTAGGTGTGCAGGGGTGGCGCAGAGGATAAGAGGGAGGAACTTGGAGCAGAATGGTCAAAAGTTCGATTTCTTAGGGTTCTAAAGTGTTTTGCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAACGGTTATTTTTCGAGATTTGAAGTGACAAATTTCCAGAAAAAGCTTCAATGTGTGTCAAAACATTCGGAATTTCAAAAAAAAAAAAAATTCAGATTTTCAGAAATATTCAAATTTTCTGAAAATTTGAAACATGGTAGGTGTCGTACCGCCTGAAACAAGCTAGGTGTATAAATGATAAAAACAATGAGGATGAGCCATTTTCGGGATAATGGGGACTTGTGAAGAATATAATATCTATAGGAGAACGATAATAATAGGGACCATGTCGTGTGTGGGAAGCAGTGATAGAACAGGGAGAGGCTGAAATTTTCTTTTTGGCTGAAAATCAAAAAACAAAAAAAAATTCGAAAAGACATTTTTTTTTGAAAACTTTTTTCGCCTGCTAACCGAAC</canonical>
            <polymorphic>ATAATCACATATATGGAAGCGAATTCATTGATTGTAGTGATGCCTCCGAGGATTCCTGATTTCTCGGATTCCAAATGATATTCTGGGAAGAATTTGGTGGCAAGGGGAAGGATTTCCTCACGATCAACTACAGTAGGCCAGTAGATGATCTGGAAGAAAATAAAAACTAGCAAAAAACTTTGAAACCCAAAGGAATCGAACTTTTGACCCTTCTTCTCCATAGACACCTCTCTTACGTCTTGAGCTACCGCGGCGCCCACGGGGCGCCTAGGTGTGCAGGGGTGGCGCAGAGGATAAGAGGGAGGAACTTGGAGCAGAATGGTCAAAAGTTCGATTTCTTAGGGTTCTAAAGTGTTTTGCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTRACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAACGGTTATTTTTCGAGATTTGAAGTGACAAATTTCCAGAAAAAGCTTCAATGTGTGTCAAAACATTCGGAATTTCAAAAAAAAAAAAAATTCAGATTTTCAGAAATATTCAAATTTTCTGAAAATTTGAAACATGGTAGGTGTCGTACCGCCTGAAACAAGCTAGGTGTATAAATGATAAAAACAATGAGGATGAGCCATTTTCGGGATAATGGGGACTTGTGAAGAATATAATATCTATAGGAGAACGATAATAATAGGGACCATGTCGTGTGTGGGAAGCAGTGATAGAACAGGGAGAGGCTGAAATTTTCTTTTTGGCTGAAAATCAAAAAACAAAAAAAAATTCGAAAAGACATTTTTTTTTGAAAACTTTTTTCGCCTGCTAACCGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>433 275 175 47 25 19 18 8</canonical_bands>
                <polymorphic_bands>608 275 47 25 19 18 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTAGTTTTGAAAGTTAGGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCAAATACATTTTTAAACTGAACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTRACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31957</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>151204</contig_pos>
        <strand>+</strand>
        <context>MRTTTTCTRA[A/C]MCGAAAACGC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGA</left_flank>
        <right_flank>ACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCACATATATGGAAGCGAATTCATTGATTGTAGTGATGCCTCCGAGGATTCCTGATTTCTCGGATTCCAAATGATATTCTGGGAAGAATTTGGTGGCAAGGGGAAGGATTTCCTCACGATCAACTACAGTAGGCCAGTAGATGATCTGGAAGAAAATAAAAACTAGCAAAAAACTTTGAAACCCAAAGGAATCGAACTTTTGACCCTTCTTCTCCATAGACACCTCTCTTACGTCTTGAGCTACCGCGGCGCCCACGGGGCGCCTAGGTGTGCAGGGGTGGCGCAGAGGATAAGAGGGAGGAACTTGGAGCAGAATGGTCAAAAGTTCGATTTCTTAGGGTTCTAAAGTGTTTTGCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAACGGTTATTTTTCGAGATTTGAAGTGACAAATTTCCAGAAAAAGCTTCAATGTGTGTCAAAACATTCGGAATTTCAAAAAAAAAAAAAATTCAGATTTTCAGAAATATTCAAATTTTCTGAAAATTTGAAACATGGTAGGTGTCGTACCGCCTGAAACAAGCTAGGTGTATAAATGATAAAAACAATGAGGATGAGCCATTTTCGGGATAATGGGGACTTGTGAAGAATATAATATCTATAGGAGAACGATAATAATAGGGACCATGTCGTGTGTGGGAAGCAGTGATAGAACAGGGAGAGGCTGAAATTTTCTTTTTGGCTGAAAATCAAAAAACAAAAAAAAATTCGAAAAGACATTTTTTTTTGAAAACTTTTTTCGCCTGCTAACCGAACTT</canonical>
            <polymorphic>AATCACATATATGGAAGCGAATTCATTGATTGTAGTGATGCCTCCGAGGATTCCTGATTTCTCGGATTCCAAATGATATTCTGGGAAGAATTTGGTGGCAAGGGGAAGGATTTCCTCACGATCAACTACAGTAGGCCAGTAGATGATCTGGAAGAAAATAAAAACTAGCAAAAAACTTTGAAACCCAAAGGAATCGAACTTTTGACCCTTCTTCTCCATAGACACCTCTCTTACGTCTTGAGCTACCGCGGCGCCCACGGGGCGCCTAGGTGTGCAGGGGTGGCGCAGAGGATAAGAGGGAGGAACTTGGAGCAGAATGGTCAAAAGTTCGATTTCTTAGGGTTCTAAAGTGTTTTGCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGAMACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAACGGTTATTTTTCGAGATTTGAAGTGACAAATTTCCAGAAAAAGCTTCAATGTGTGTCAAAACATTCGGAATTTCAAAAAAAAAAAAAATTCAGATTTTCAGAAATATTCAAATTTTCTGAAAATTTGAAACATGGTAGGTGTCGTACCGCCTGAAACAAGCTAGGTGTATAAATGATAAAAACAATGAGGATGAGCCATTTTCGGGATAATGGGGACTTGTGAAGAATATAATATCTATAGGAGAACGATAATAATAGGGACCATGTCGTGTGTGGGAAGCAGTGATAGAACAGGGAGAGGCTGAAATTTTCTTTTTGGCTGAAAATCAAAAAACAAAAAAAAATTCGAAAAGACATTTTTTTTTGAAAACTTTTTTCGCCTGCTAACCGAACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>149 110 106 90 86 70 60 55 49 33 32 28 26 21 17 15 10 10 10 8 5 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>166 110 106 90 86 70 60 55 49 33 32 28 26 21 15 10 10 10 8 5 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTAGTTTTGAAAGTTAGGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCAAATACATTTTTAAACTGAACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGAMACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31958</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>151205</contig_pos>
        <strand>+</strand>
        <context>RTTTTCTRAM[A/C]CGAAAACGCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGAC</left_flank>
        <right_flank>CGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCACATATATGGAAGCGAATTCATTGATTGTAGTGATGCCTCCGAGGATTCCTGATTTCTCGGATTCCAAATGATATTCTGGGAAGAATTTGGTGGCAAGGGGAAGGATTTCCTCACGATCAACTACAGTAGGCCAGTAGATGATCTGGAAGAAAATAAAAACTAGCAAAAAACTTTGAAACCCAAAGGAATCGAACTTTTGACCCTTCTTCTCCATAGACACCTCTCTTACGTCTTGAGCTACCGCGGCGCCCACGGGGCGCCTAGGTGTGCAGGGGTGGCGCAGAGGATAAGAGGGAGGAACTTGGAGCAGAATGGTCAAAAGTTCGATTTCTTAGGGTTCTAAAGTGTTTTGCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAACGGTTATTTTTCGAGATTTGAAGTGACAAATTTCCAGAAAAAGCTTCAATGTGTGTCAAAACATTCGGAATTTCAAAAAAAAAAAAAATTCAGATTTTCAGAAATATTCAAATTTTCTGAAAATTTGAAACATGGTAGGTGTCGTACCGCCTGAAACAAGCTAGGTGTATAAATGATAAAAACAATGAGGATGAGCCATTTTCGGGATAATGGGGACTTGTGAAGAATATAATATCTATAGGAGAACGATAATAATAGGGACCATGTCGTGTGTGGGAAGCAGTGATAGAACAGGGAGAGGCTGAAATTTTCTTTTTGGCTGAAAATCAAAAAACAAAAAAAAATTCGAAAAGACATTTTTTTTTGAAAACTTTTTTCGCCTGCTAACCGAACTTG</canonical>
            <polymorphic>ATCACATATATGGAAGCGAATTCATTGATTGTAGTGATGCCTCCGAGGATTCCTGATTTCTCGGATTCCAAATGATATTCTGGGAAGAATTTGGTGGCAAGGGGAAGGATTTCCTCACGATCAACTACAGTAGGCCAGTAGATGATCTGGAAGAAAATAAAAACTAGCAAAAAACTTTGAAACCCAAAGGAATCGAACTTTTGACCCTTCTTCTCCATAGACACCTCTCTTACGTCTTGAGCTACCGCGGCGCCCACGGGGCGCCTAGGTGTGCAGGGGTGGCGCAGAGGATAAGAGGGAGGAACTTGGAGCAGAATGGTCAAAAGTTCGATTTCTTAGGGTTCTAAAGTGTTTTGCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACMCGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAACGGTTATTTTTCGAGATTTGAAGTGACAAATTTCCAGAAAAAGCTTCAATGTGTGTCAAAACATTCGGAATTTCAAAAAAAAAAAAAATTCAGATTTTCAGAAATATTCAAATTTTCTGAAAATTTGAAACATGGTAGGTGTCGTACCGCCTGAAACAAGCTAGGTGTATAAATGATAAAAACAATGAGGATGAGCCATTTTCGGGATAATGGGGACTTGTGAAGAATATAATATCTATAGGAGAACGATAATAATAGGGACCATGTCGTGTGTGGGAAGCAGTGATAGAACAGGGAGAGGCTGAAATTTTCTTTTTGGCTGAAAATCAAAAAACAAAAAAAAATTCGAAAAGACATTTTTTTTTGAAAACTTTTTTCGCCTGCTAACCGAACTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>149 111 106 90 86 70 60 55 49 33 32 28 26 21 17 15 10 10 10 8 4 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>166 111 106 90 86 70 60 55 49 33 32 28 26 21 15 10 10 10 8 4 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTAGTTTTGAAAGTTAGGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTCAAATACATTTTTAAACTGAACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACACGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GCTAGTTTTGAAAGTTAGGAAAAGTTTTTGAAAATCCAAAAAAAAATTTTTTTTCGAAAATTTTGAAAATTAAATTTTTAAACGGAATTTGTTGTTTCGAGAAGTTATAGTACCAAAAATCGAACTTTCCCGCCGTTTTCTGACMCGAAAACGCGTTTTGTGCACTTTTCCGTGAGATTTGGTGCATTGGTACCAATGTACCGGATTTGACGCCAAATTTTGAATGTTCAGTTTAAAAATGTATTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31959</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>160585</contig_pos>
        <strand></strand>
        <context>agaatctttg[G/A]aaaatgctga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGTTTCAAAAAAATTGGTTCAAATTTGGCTGGGTTACTGTAGAATCTTTG</left_flank>
        <right_flank>AAAATGCTGACTATTTTTCACAAAAAGGGTCATATCTCAGTCAGGTTTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGAAATATCGTCAAACATTTTCAAAGATTCTACAGTAACCCAACCAAACTTGAGCCAATTTTTTTGAAACTCAAATTTTCAAATTTTTCAAGCTTAGACGGTCACAATGAGATAAACATGGCTATTTTTGAACAATTTTCGATTTTATGGTGCAAATTCGCTCTACCGAAATTTTTAAGCTTAAAATCAGCAAAATTGTGGAACACCAACAAAACTACCGTGAATAAAAATGGTCATATCTCAGTCAGTTTTAGTTCGTTTTCAGAAATTTTTTGATTTTTGAAAATTTCCTGATTAGAGCTTCAGAACGAATATAAATATGCCTTGTTTCTTAAAAATTGCGAAAATTTCGGAAGAGCGAATTTGCACCGAGAAATGAAATTTGTCCAAACCTAGTCATGTTTATACTCATTTTGACCGTTTTGGCTTGATAAATCTGAATATTTTGGTTTCAAAAAAATTGGTTCAAATTTGGCTGGGTTACTGTAGAATCTTTGGAAAATGCTGACTATTTTTCACAAAAAGGGTCATATCTCAGTCAGGTTTTGTTCAATTTCGGAAATTTTTTGATTTTTGAAATTCACATGACCAGAGCTTCAAAATAATAATAAAGATTCCTTGTTTCCATAAAAATTGCAAAAATTTCGGTAGAGCGAATTTGCTTCAAAAAATGAAACTTGTTAAAACTAGCCATGATTATACTTATTTTGACTGTCTAAACTTGAAAAATCTGTAAATTTAAATTTTAAGAACTTTGGCTCAAATTTGGCCGGGTTACTGTAGAATCTTTGAAAAATTCGGATGATATTTTAGAAATAGGGTCATATCTCAGTTAGTTTTCGTTCAATTTTCAAAATTTTTATTTTTTGAGATTCTCAGATTCAGAAAAGTTCAAATAATAATAATTTATATCAATGGAGCGAATTTGCAGAGTGAGTCAGTAGCGGAATACGAGCACGACGTGGATGAATACGTTCGTCTTTTGGAGAATCAATTGG</canonical>
            <polymorphic>TATGAAATATCGTCAAACATTTTCAAAGATTCTACAGTAACCCAACCAAACTTGAGCCAATTTTTTTGAAACTCAAATTTTCAAATTTTTCAAGCTTAGACGGTCACAATGAGATAAACATGGCTATTTTTGAACAATTTTCGATTTTATGGTGCAAATTCGCTCTACCGAAATTTTTAAGCTTAAAATCAGCAAAATTGTGGAACACCAACAAAACTACCGTGAATAAAAATGGTCATATCTCAGTCAGTTTTAGTTCGTTTTCAGAAATTTTTTGATTTTTGAAAATTTCCTGATTAGAGCTTCAGAACGAATATAAATATGCCTTGTTTCTTAAAAATTGCGAAAATTTCGGAAGAGCGAATTTGCACCGAGAAATGAAATTTGTCCAAACCTAGTCATGTTTATACTCATTTTGACCGTTTTGGCTTGATAAATCTGAATATTTTGGTTTCAAAAAAATTGGTTCAAATTTGGCTGGGTTACTGTAGAATCTTTGRAAAATGCTGACTATTTTTCACAAAAAGGGTCATATCTCAGTCAGGTTTTGTTCAATTTCGGAAATTTTTTGATTTTTGAAATTCACATGACCAGAGCTTCAAAATAATAATAAAGATTCCTTGTTTCCATAAAAATTGCAAAAATTTCGGTAGAGCGAATTTGCTTCAAAAAATGAAACTTGTTAAAACTAGCCATGATTATACTTATTTTGACTGTCTAAACTTGAAAAATCTGTAAATTTAAATTTTAAGAACTTTGGCTCAAATTTGGCCGGGTTACTGTAGAATCTTTGAAAAATTCGGATGATATTTTAGAAATAGGGTCATATCTCAGTTAGTTTTCGTTCAATTTTCAAAATTTTTATTTTTTGAGATTCTCAGATTCAGAAAAGTTCAAATAATAATAATTTATATCAATGGAGCGAATTTGCAGAGTGAGTCAGTAGCGGAATACGAGCACGACGTGGATGAATACGTTCGTCTTTTGGAGAATCAATTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGAACACCAACAAAACTAC</pcr_primer_p1>
		<pcr_primer_p2>CTACTGACTCACTCTGCAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>747</pcr_amplicon_size>
		<canonical_amplicon>GTGGAACACCAACAAAACTACCGTGAATAAAAATGGTCATATCTCAGTCAGTTTTAGTTCGTTTTCAGAAATTTTTTGATTTTTGAAAATTTCCTGATTAGAGCTTCAGAACGAATATAAATATGCCTTGTTTCTTAAAAATTGCGAAAATTTCGGAAGAGCGAATTTGCACCGAGAAATGAAATTTGTCCAAACCTAGTCATGTTTATACTCATTTTGACCGTTTTGGCTTGATAAATCTGAATATTTTGGTTTCAAAAAAATTGGTTCAAATTTGGCTGGGTTACTGTAGAATCTTTGGAAAATGCTGACTATTTTTCACAAAAAGGGTCATATCTCAGTCAGGTTTTGTTCAATTTCGGAAATTTTTTGATTTTTGAAATTCACATGACCAGAGCTTCAAAATAATAATAAAGATTCCTTGTTTCCATAAAAATTGCAAAAATTTCGGTAGAGCGAATTTGCTTCAAAAAATGAAACTTGTTAAAACTAGCCATGATTATACTTATTTTGACTGTCTAAACTTGAAAAATCTGTAAATTTAAATTTTAAGAACTTTGGCTCAAATTTGGCCGGGTTACTGTAGAATCTTTGAAAAATTCGGATGATATTTTAGAAATAGGGTCATATCTCAGTTAGTTTTCGTTCAATTTTCAAAATTTTTATTTTTTGAGATTCTCAGATTCAGAAAAGTTCAAATAATAATAATTTATATCAATGGAGCGAATTTGCAGAGTGAGTCAGTAG</canonical_amplicon>
		<polymorphic_amplicon>GTGGAACACCAACAAAACTACCGTGAATAAAAATGGTCATATCTCAGTCAGTTTTAGTTCGTTTTCAGAAATTTTTTGATTTTTGAAAATTTCCTGATTAGAGCTTCAGAACGAATATAAATATGCCTTGTTTCTTAAAAATTGCGAAAATTTCGGAAGAGCGAATTTGCACCGAGAAATGAAATTTGTCCAAACCTAGTCATGTTTATACTCATTTTGACCGTTTTGGCTTGATAAATCTGAATATTTTGGTTTCAAAAAAATTGGTTCAAATTTGGCTGGGTTACTGTAGAATCTTTGRAAAATGCTGACTATTTTTCACAAAAAGGGTCATATCTCAGTCAGGTTTTGTTCAATTTCGGAAATTTTTTGATTTTTGAAATTCACATGACCAGAGCTTCAAAATAATAATAAAGATTCCTTGTTTCCATAAAAATTGCAAAAATTTCGGTAGAGCGAATTTGCTTCAAAAAATGAAACTTGTTAAAACTAGCCATGATTATACTTATTTTGACTGTCTAAACTTGAAAAATCTGTAAATTTAAATTTTAAGAACTTTGGCTCAAATTTGGCCGGGTTACTGTAGAATCTTTGAAAAATTCGGATGATATTTTAGAAATAGGGTCATATCTCAGTTAGTTTTCGTTCAATTTTCAAAATTTTTATTTTTTGAGATTCTCAGATTCAGAAAAGTTCAAATAATAATAATTTATATCAATGGAGCGAATTTGCAGAGTGAGTCAGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31960</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>162937</contig_pos>
        <strand></strand>
        <context>ctaacgtgtt[C/T]tctgtcactt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGTGGATATTTCGAGCTGAAACTTGTACCAACAGGTTTCTAACGTGTT</left_flank>
        <right_flank>TCTGTCACTTTTTACCTAATTGCCAGTTGGTGGCCTAGAAATACAAAAAT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTAGACTTTTTTCAAAAAATTGATCATAACTTTGTTAAAAATAGTCCTAAATGAGTGAGAGTGCCACCAATAAACTCCTCGAAGCATAAGAAACATTTTTGACATATTTAATTTTTGGTGGCCGAATTTTGTTTTTCTAGGCCACCAACTTGAAATCACTGTAACTTGGCTTAAAATGACTTCTTTGGAATTTTTAAAACATCTATGTATTCCTTAAGACAAAAGAAACATTTTGAAGTTAATTGTGGCAGAGTTTTCCAGCTTTTTGGTTTTTTAGGCCATTACCTTGAAATCGCAATAACTCGGCTGAAAATGGTCCACATTAAACGAAAATACCACCAAAAGACTTGTCAGAGTATAACAAACATTTTTGACCTACTTAAGTATTGGTGGTCTAGTTTTGGTTTTCTAGGCCACCAACTTCAAAAATGAGCATAACTCGGGTAAAAGTGGATATTTCGAGCTGAAACTTGTACCAACAGGTTTCTAACGTGTTCTCTGTCACTTTTTACCTAATTGCCAGTTGGTGGCCTAGAAATACAAAAATTCGGTTTCTAGGCCACCTATGTTGTTGTTTTTTGTTTTAATTTTTTAACGTTTTTTTTACTGAAAACACAAAGTGTAGAGTTCATTGTAGAAAAAAGGGAAAAAAGAAACTTTGGGGACAAAAAAAACAGGAAATTTGAATTTTTTAGAAAAAAAGGGACTTTAACCAAATCAATTAATCATTAAGTGCACGACAACGGAACACTTCGATAAGATTAGCAATGACTTGATACAAAACGGTCCATGCTTGGCGGGTTTCATCGTCCAATTGATATCCGTTACACTCTTTGACCACTTCAAGCACCGGCTCGATCATGTGCTGCAAAATTCGGGATTTTTTCAAAATTCCAAAAACTCATTTTGAAGGGATTTATAGTCATTTTAAAGAGGTGGCCTAGAAAACCAAAATTAGCAAAACTAGGCCGCAATCAATTTTAAGATGGTCCACTTG</canonical>
            <polymorphic>GAATTAGACTTTTTTCAAAAAATTGATCATAACTTTGTTAAAAATAGTCCTAAATGAGTGAGAGTGCCACCAATAAACTCCTCGAAGCATAAGAAACATTTTTGACATATTTAATTTTTGGTGGCCGAATTTTGTTTTTCTAGGCCACCAACTTGAAATCACTGTAACTTGGCTTAAAATGACTTCTTTGGAATTTTTAAAACATCTATGTATTCCTTAAGACAAAAGAAACATTTTGAAGTTAATTGTGGCAGAGTTTTCCAGCTTTTTGGTTTTTTAGGCCATTACCTTGAAATCGCAATAACTCGGCTGAAAATGGTCCACATTAAACGAAAATACCACCAAAAGACTTGTCAGAGTATAACAAACATTTTTGACCTACTTAAGTATTGGTGGTCTAGTTTTGGTTTTCTAGGCCACCAACTTCAAAAATGAGCATAACTCGGGTAAAAGTGGATATTTCGAGCTGAAACTTGTACCAACAGGTTTCTAACGTGTTYTCTGTCACTTTTTACCTAATTGCCAGTTGGTGGCCTAGAAATACAAAAATTCGGTTTCTAGGCCACCTATGTTGTTGTTTTTTGTTTTAATTTTTTAACGTTTTTTTTACTGAAAACACAAAGTGTAGAGTTCATTGTAGAAAAAAGGGAAAAAAGAAACTTTGGGGACAAAAAAAACAGGAAATTTGAATTTTTTAGAAAAAAAGGGACTTTAACCAAATCAATTAATCATTAAGTGCACGACAACGGAACACTTCGATAAGATTAGCAATGACTTGATACAAAACGGTCCATGCTTGGCGGGTTTCATCGTCCAATTGATATCCGTTACACTCTTTGACCACTTCAAGCACCGGCTCGATCATGTGCTGCAAAATTCGGGATTTTTTCAAAATTCCAAAAACTCATTTTGAAGGGATTTATAGTCATTTTAAAGAGGTGGCCTAGAAAACCAAAATTAGCAAAACTAGGCCGCAATCAATTTTAAGATGGTCCACTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCCAGGTGAATTAGACTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAACTCTACACTTTGTGTTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>641</pcr_amplicon_size>
		<canonical_amplicon>TCTCTGTCACTTTTTACCTAATTGCCAGTTGGTGGCCTAGAAATACAAAAATTCGGTTTCTAGGCCACCTATGTTGTTGTTTTTTGTTTTAATTTTTTAACGTTTTTTTTACTGAAAACACAAAGTGTAGAGTTC</canonical_amplicon>
		<polymorphic_amplicon>TYTCTGTCACTTTTTACCTAATTGCCAGTTGGTGGCCTAGAAATACAAAAATTCGGTTTCTAGGCCACCTATGTTGTTGTTTTTTGTTTTAATTTTTTAACGTTTTTTTTACTGAAAACACAAAGTGTAGAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31961</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>229106</contig_pos>
        <strand>+</strand>
        <context>TTTGGGCCTA[A/G]AATCCTATGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTTTCTGGCTATTTTAAGCTCAAAAATCATGATTTTATTTTGGGCCTA</left_flank>
        <right_flank>AATCCTATGTTTGGGAGATTTTTGGCTCCAAAAACTGATTTTTCGGCTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGGCCTAAAATTGCTATTTTTGCCTGTTTTTAACTCAAAAATTCGCGTTTATCAGCCATTTTTAGGCTTAAAACTATACCATTTTTGACATATATTTAAGCAATTCCTTTTCACTAAAAATCTGTTTTTTGAGTCGAAAATAGCTGATTTTCAGAAGATTCCAAGCTCTGGTTTTAGTAAATTTTAATGAATTTTTTTTGGATATTTTCAGCAATTTTCGAGTTTTCTACGACAAATTTCGATATTTTCAGCCAAAAATGTGCTGAATTTGTCTGTAATCAGCTTAGAATTTCGGCTGAAATTTCTGGAAAAAATTAGCGAAAATTCCAGAAAAATCGATAAAAATCACTCTAAAAATTACAGTTTTTCTTGAAAAATTGGCTCGAATTCTGACATTTTTTGGGTCTGAAAATCATATTTTTGGGTGATTTTTTGATTCAAAAACTAGTTTTCTGGCTATTTTAAGCTCAAAAATCATGATTTTATTTTGGGCCTAAAATCCTATGTTTGGGAGATTTTTGGCTCCAAAAACTGATTTTTCGGCTATTTTGAGGATAAAAATCATGATTTTAGTTTGATAAATTTTGGAAGAATTCCAGAAAAATCGATGAAAATCGCCTGAAAAGGACCGAAAATCGAGATTTTAGCTGAAATTTTTCCAAAAAATCGAAATATTTGGAACTTTTCAAGTCGAAAATTGAGATTTTCGCCTGAAATTTCTGTTAAAAATCGGTCAAAAATAATGAAAAAAAGTCATAAAAACACGAAAAATCCCGATTTTCTTGTACACGATTTCCCATGAAAATCTCATTTTTTACACCAAAAATCATTAAAATTTATAAGTACTTGAATCGATGCGAATATCCATTTGAATACATCTTCGTCAATAATTCCACTTGTAGTGGAATCGACGTCACATTGTCCACTCCTTGCTCCAGATACAGTACTCCCTGAATATTTTAGGCCAATTTTTTGAATTTTTTGATTGAAAAATTGG</canonical>
            <polymorphic>TTTTGGCCTAAAATTGCTATTTTTGCCTGTTTTTAACTCAAAAATTCGCGTTTATCAGCCATTTTTAGGCTTAAAACTATACCATTTTTGACATATATTTAAGCAATTCCTTTTCACTAAAAATCTGTTTTTTGAGTCGAAAATAGCTGATTTTCAGAAGATTCCAAGCTCTGGTTTTAGTAAATTTTAATGAATTTTTTTTGGATATTTTCAGCAATTTTCGAGTTTTCTACGACAAATTTCGATATTTTCAGCCAAAAATGTGCTGAATTTGTCTGTAATCAGCTTAGAATTTCGGCTGAAATTTCTGGAAAAAATTAGCGAAAATTCCAGAAAAATCGATAAAAATCACTCTAAAAATTACAGTTTTTCTTGAAAAATTGGCTCGAATTCTGACATTTTTTGGGTCTGAAAATCATATTTTTGGGTGATTTTTTGATTCAAAAACTAGTTTTCTGGCTATTTTAAGCTCAAAAATCATGATTTTATTTTGGGCCTARAATCCTATGTTTGGGAGATTTTTGGCTCCAAAAACTGATTTTTCGGCTATTTTGAGGATAAAAATCATGATTTTAGTTTGATAAATTTTGGAAGAATTCCAGAAAAATCGATGAAAATCGCCTGAAAAGGACCGAAAATCGAGATTTTAGCTGAAATTTTTCCAAAAAATCGAAATATTTGGAACTTTTCAAGTCGAAAATTGAGATTTTCGCCTGAAATTTCTGTTAAAAATCGGTCAAAAATAATGAAAAAAAGTCATAAAAACACGAAAAATCCCGATTTTCTTGTACACGATTTCCCATGAAAATCTCATTTTTTACACCAAAAATCATTAAAATTTATAAGTACTTGAATCGATGCGAATATCCATTTGAATACATCTTCGTCAATAATTCCACTTGTAGTGGAATCGACGTCACATTGTCCACTCCTTGCTCCAGATACAGTACTCCCTGAATATTTTAGGCCAATTTTTTGAATTTTTTGATTGAAAAATTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTCCAGAAAAATCGATAAA</pcr_primer_p1>
		<pcr_primer_p2>TCATGATTTTTATCCTCAAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAATTCCAGAAAAATCGATAAAAATCACTCTAAAAATTACAGTTTTTCTTGAAAAATTGGCTCGAATTCTGACATTTTTTGGGTCTGAAAATCATATTTTTGGGTGATTTTTTGATTCAAAAACTAGTTTTCTGGCTATTTTAAGCTCAAAAATCATGATTTTATTTTGGGCCTAAAATCCTATGTTTGGGAGATTTTTGGCTCCAAAAACTGATTTTTCGGCTATTTTGAGGATAAAAATCATGA</canonical_amplicon>
		<polymorphic_amplicon>AAAATTCCAGAAAAATCGATAAAAATCACTCTAAAAATTACAGTTTTTCTTGAAAAATTGGCTCGAATTCTGACATTTTTTGGGTCTGAAAATCATATTTTTGGGTGATTTTTTGATTCAAAAACTAGTTTTCTGGCTATTTTAAGCTCAAAAATCATGATTTTATTTTGGGCCTARAATCCTATGTTTGGGAGATTTTTGGCTCCAAAAACTGATTTTTCGGCTATTTTGAGGATAAAAATCATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31962</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>229198</contig_pos>
        <strand>+</strand>
        <context>TAAATTTTGG[A/G]AGAATTCCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGGCTATTTTGAGGATAAAAATCATGATTTTAGTTTGATAAATTTTGG</left_flank>
        <right_flank>AGAATTCCAGAAAAATCGATGAAAATCGCCTGAAAAGGACCGAAAATCGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATATTTAAGCAATTCCTTTTCACTAAAAATCTGTTTTTTGAGTCGAAAATAGCTGATTTTCAGAAGATTCCAAGCTCTGGTTTTAGTAAATTTTAATGAATTTTTTTTGGATATTTTCAGCAATTTTCGAGTTTTCTACGACAAATTTCGATATTTTCAGCCAAAAATGTGCTGAATTTGTCTGTAATCAGCTTAGAATTTCGGCTGAAATTTCTGGAAAAAATTAGCGAAAATTCCAGAAAAATCGATAAAAATCACTCTAAAAATTACAGTTTTTCTTGAAAAATTGGCTCGAATTCTGACATTTTTTGGGTCTGAAAATCATATTTTTGGGTGATTTTTTGATTCAAAAACTAGTTTTCTGGCTATTTTAAGCTCAAAAATCATGATTTTATTTTGGGCCTAAAATCCTATGTTTGGGAGATTTTTGGCTCCAAAAACTGATTTTTCGGCTATTTTGAGGATAAAAATCATGATTTTAGTTTGATAAATTTTGGAAGAATTCCAGAAAAATCGATGAAAATCGCCTGAAAAGGACCGAAAATCGAGATTTTAGCTGAAATTTTTCCAAAAAATCGAAATATTTGGAACTTTTCAAGTCGAAAATTGAGATTTTCGCCTGAAATTTCTGTTAAAAATCGGTCAAAAATAATGAAAAAAAGTCATAAAAACACGAAAAATCCCGATTTTCTTGTACACGATTTCCCATGAAAATCTCATTTTTTACACCAAAAATCATTAAAATTTATAAGTACTTGAATCGATGCGAATATCCATTTGAATACATCTTCGTCAATAATTCCACTTGTAGTGGAATCGACGTCACATTGTCCACTCCTTGCTCCAGATACAGTACTCCCTGAATATTTTAGGCCAATTTTTTGAATTTTTTGATTGAAAAATTGGCATTTTTCACCCTAGAAACTCAATTTTTAGGATAGAAATTTTAATATTTTCAAGAAAAATTCAAAAATCAACATTTTGAAAAAAATCGATTT</canonical>
            <polymorphic>ATATATTTAAGCAATTCCTTTTCACTAAAAATCTGTTTTTTGAGTCGAAAATAGCTGATTTTCAGAAGATTCCAAGCTCTGGTTTTAGTAAATTTTAATGAATTTTTTTTGGATATTTTCAGCAATTTTCGAGTTTTCTACGACAAATTTCGATATTTTCAGCCAAAAATGTGCTGAATTTGTCTGTAATCAGCTTAGAATTTCGGCTGAAATTTCTGGAAAAAATTAGCGAAAATTCCAGAAAAATCGATAAAAATCACTCTAAAAATTACAGTTTTTCTTGAAAAATTGGCTCGAATTCTGACATTTTTTGGGTCTGAAAATCATATTTTTGGGTGATTTTTTGATTCAAAAACTAGTTTTCTGGCTATTTTAAGCTCAAAAATCATGATTTTATTTTGGGCCTAAAATCCTATGTTTGGGAGATTTTTGGCTCCAAAAACTGATTTTTCGGCTATTTTGAGGATAAAAATCATGATTTTAGTTTGATAAATTTTGGRAGAATTCCAGAAAAATCGATGAAAATCGCCTGAAAAGGACCGAAAATCGAGATTTTAGCTGAAATTTTTCCAAAAAATCGAAATATTTGGAACTTTTCAAGTCGAAAATTGAGATTTTCGCCTGAAATTTCTGTTAAAAATCGGTCAAAAATAATGAAAAAAAGTCATAAAAACACGAAAAATCCCGATTTTCTTGTACACGATTTCCCATGAAAATCTCATTTTTTACACCAAAAATCATTAAAATTTATAAGTACTTGAATCGATGCGAATATCCATTTGAATACATCTTCGTCAATAATTCCACTTGTAGTGGAATCGACGTCACATTGTCCACTCCTTGCTCCAGATACAGTACTCCCTGAATATTTTAGGCCAATTTTTTGAATTTTTTGATTGAAAAATTGGCATTTTTCACCCTAGAAACTCAATTTTTAGGATAGAAATTTTAATATTTTCAAGAAAAATTCAAAAATCAACATTTTGAAAAAAATCGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCCTATGTTTGGGAGATTTT</pcr_primer_p1>
		<pcr_primer_p2>TCATTATTTTTGACCGATTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATCCTATGTTTGGGAGATTTTTGGCTCCAAAAACTGATTTTTCGGCTATTTTGAGGATAAAAATCATGATTTTAGTTTGATAAATTTTGGAAGAATTCCAGAAAAATCGATGAAAATCGCCTGAAAAGGACCGAAAATCGAGATTTTAGCTGAAATTTTTCCAAAAAATCGAAATATTTGGAACTTTTCAAGTCGAAAATTGAGATTTTCGCCTGAAATTTCTGTTAAAAATCGGTCAAAAATAATGA</canonical_amplicon>
		<polymorphic_amplicon>AATCCTATGTTTGGGAGATTTTTGGCTCCAAAAACTGATTTTTCGGCTATTTTGAGGATAAAAATCATGATTTTAGTTTGATAAATTTTGGRAGAATTCCAGAAAAATCGATGAAAATCGCCTGAAAAGGACCGAAAATCGAGATTTTAGCTGAAATTTTTCCAAAAAATCGAAATATTTGGAACTTTTCAAGTCGAAAATTGAGATTTTCGCCTGAAATTTCTGTTAAAAATCGGTCAAAAATAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31963</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>229634</contig_pos>
        <strand>+</strand>
        <context>ACTCAATTTT[A/G]AGGATAGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATTTTTTGATTGAAAAATTGGCATTTTTCACCCTAGAAACTCAATTTT</left_flank>
        <right_flank>AGGATAGAAATTTTAATATTTTCAAGAAAAATTCAAAAATCAACATTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAACTGATTTTTCGGCTATTTTGAGGATAAAAATCATGATTTTAGTTTGATAAATTTTGGAAGAATTCCAGAAAAATCGATGAAAATCGCCTGAAAAGGACCGAAAATCGAGATTTTAGCTGAAATTTTTCCAAAAAATCGAAATATTTGGAACTTTTCAAGTCGAAAATTGAGATTTTCGCCTGAAATTTCTGTTAAAAATCGGTCAAAAATAATGAAAAAAAGTCATAAAAACACGAAAAATCCCGATTTTCTTGTACACGATTTCCCATGAAAATCTCATTTTTTACACCAAAAATCATTAAAATTTATAAGTACTTGAATCGATGCGAATATCCATTTGAATACATCTTCGTCAATAATTCCACTTGTAGTGGAATCGACGTCACATTGTCCACTCCTTGCTCCAGATACAGTACTCCCTGAATATTTTAGGCCAATTTTTTGAATTTTTTGATTGAAAAATTGGCATTTTTCACCCTAGAAACTCAATTTTTAGGATAGAAATTTTAATATTTTCAAGAAAAATTCAAAAATCAACATTTTGAAAAAAATCGATTTAAGGCCCGAAAATCGATATTTTCTGGAACTTCAAAAATCAATAAAAACAATACATACAAAATTTTTCACTGCCTTATCACAGACTTGATAACAATGCGAATTATTTCGTTTATTCAATTTCTTCAAAATAATCCATTTATCGGCGAACACTTGTTTCGGCTTCAAATTCGCCAAATCATCGTCTGAAAATCGATGAATCACCGTCTCCAGATCGTGACCACGACGCGCGCGACTCATTTTTCTGAAACAAAATTTGAACATTCAAAAAAACCGATTTTCCAAAGATTTCAAGGGGAAATACATAATTTTAAGTTAAAAAATCGAATTTCTCGCGTTTTTTCGATCACAATCAGCTTTGAAAGTCGAAAAAATCAAGAAAAAACCAGTGGAATTCATCAAATTTAGGCCTAAAAATAAATTTAAAAATCGAAAAACG</canonical>
            <polymorphic>CAAAAACTGATTTTTCGGCTATTTTGAGGATAAAAATCATGATTTTAGTTTGATAAATTTTGGAAGAATTCCAGAAAAATCGATGAAAATCGCCTGAAAAGGACCGAAAATCGAGATTTTAGCTGAAATTTTTCCAAAAAATCGAAATATTTGGAACTTTTCAAGTCGAAAATTGAGATTTTCGCCTGAAATTTCTGTTAAAAATCGGTCAAAAATAATGAAAAAAAGTCATAAAAACACGAAAAATCCCGATTTTCTTGTACACGATTTCCCATGAAAATCTCATTTTTTACACCAAAAATCATTAAAATTTATAAGTACTTGAATCGATGCGAATATCCATTTGAATACATCTTCGTCAATAATTCCACTTGTAGTGGAATCGACGTCACATTGTCCACTCCTTGCTCCAGATACAGTACTCCCTGAATATTTTAGGCCAATTTTTTGAATTTTTTGATTGAAAAATTGGCATTTTTCACCCTAGAAACTCAATTTTRAGGATAGAAATTTTAATATTTTCAAGAAAAATTCAAAAATCAACATTTTGAAAAAAATCGATTTAAGGCCCGAAAATCGATATTTTCTGGAACTTCAAAAATCAATAAAAACAATACATACAAAATTTTTCACTGCCTTATCACAGACTTGATAACAATGCGAATTATTTCGTTTATTCAATTTCTTCAAAATAATCCATTTATCGGCGAACACTTGTTTCGGCTTCAAATTCGCCAAATCATCGTCTGAAAATCGATGAATCACCGTCTCCAGATCGTGACCACGACGCGCGCGACTCATTTTTCTGAAACAAAATTTGAACATTCAAAAAAACCGATTTTCCAAAGATTTCAAGGGGAAATACATAATTTTAAGTTAAAAAATCGAATTTCTCGCGTTTTTTCGATCACAATCAGCTTTGAAAGTCGAAAAAATCAAGAAAAAACCAGTGGAATTCATCAAATTTAGGCCTAAAAATAAATTTAAAAATCGAAAAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGTCAATAATTCCACTTGTAGT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAAGTTCCAGAAAATATC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCGTCAATAATTCCACTTGTAGTGGAATCGACGTCACATTGTCCACTCCTTGCTCCAGATACAGTACTCCCTGAATATTTTAGGCCAATTTTTTGAATTTTTTGATTGAAAAATTGGCATTTTTCACCCTAGAAACTCAATTTTTAGGATAGAAATTTTAATATTTTCAAGAAAAATTCAAAAATCAACATTTTGAAAAAAATCGATTTAAGGCCCGAAAATCGATATTTTCTGGAACTTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCGTCAATAATTCCACTTGTAGTGGAATCGACGTCACATTGTCCACTCCTTGCTCCAGATACAGTACTCCCTGAATATTTTAGGCCAATTTTTTGAATTTTTTGATTGAAAAATTGGCATTTTTCACCCTAGAAACTCAATTTTRAGGATAGAAATTTTAATATTTTCAAGAAAAATTCAAAAATCAACATTTTGAAAAAAATCGATTTAAGGCCCGAAAATCGATATTTTCTGGAACTTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31964</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>231819</contig_pos>
        <strand>+</strand>
        <context>AAAAAATCGC[A/G]AAAAAAAGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAGAAATAATCAGCGATCATTTTTATGTCGAAAAAAGTGAAAAAATCGC</left_flank>
        <right_flank>AAAAAAAGTGAACCCTTCCAACTAGTATAGCGCCTAAAATTCAATGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGATTGTTGGGGAGGTTATAACGGTTTGGCAGCTCTTGGATATGTTCACGAGACGGTGAATCATTCGCTCAACTTCGTGAATCCAACCACTGGTGTCCACACTCAACGTGTTGAGTCACTTTGGAGCCAGTTGAAGAAAGAAATCAAACCCAAATGTGGACTCAGAGGAGACAATTGGGACGATCACTGGTTTCAGGCTCTTTGGATGTTCAAGTATCACGAAGAGTCGAAATTCTATGAGCTGTGGAAGCAAATCTCGGAGAAATACCCATTGAATTAAATTTTTGTTTTCATACTTTTCAAAGTTTTGTTGTTTTAAATAAATTGTTGTTGTTGAGTCTATTCAAAAAAATATTAATACTAAAAATGGTTCAAAAAATCCGAGAATTATATTTTGAGAACTATTTTTGAAAAAAAAAATTTTGTGTCCTAACAACTTAAAAACATCATAGAAATAATCAGCGATCATTTTTATGTCGAAAAAAGTGAAAAAATCGCAAAAAAAAGTGAACCCTTCCAACTAGTATAGCGCCTAAAATTCAATGAAAAATCGATAATCGATTTCAGAAAGAAGAAGAATTGGTAGTGATTGTAGAGAGAGAAGCAATCAAATTCGCCTGATTTCCATAATTTTTTCTTTTCGAAACTTGTGATTTTTTCATCAAAATTTCCAAATCCTCTAGCATTTTTTTCTGCTCTTGTTCCATTCGTTTCTCATTCTCAATCCGTTCTCCGAGCACTTTTTTCTGCTCTTTCAGCACAAAAATCACTTTTTCAATTTCCTCGGATTTTTTGGTCCATTCGCGGAATTTCTCATCTTCATAATCACAATCCAGCTTTAGTTGTTTCAATTGATTCTGCAACAAATATTGATTTTTTGAAAAAAGTTTTAATTTTTTTTAAAATCAATAAAATCAATAAATGACCTAAAACTTTTTTGTGCATTTTTTAGGCCGCCAGAGACACTCACTTTGTGCATTCCACGACGAAAATCGATTT</canonical>
            <polymorphic>CTGATTGTTGGGGAGGTTATAACGGTTTGGCAGCTCTTGGATATGTTCACGAGACGGTGAATCATTCGCTCAACTTCGTGAATCCAACCACTGGTGTCCACACTCAACGTGTTGAGTCACTTTGGAGCCAGTTGAAGAAAGAAATCAAACCCAAATGTGGACTCAGAGGAGACAATTGGGACGATCACTGGTTTCAGGCTCTTTGGATGTTCAAGTATCACGAAGAGTCGAAATTCTATGAGCTGTGGAAGCAAATCTCGGAGAAATACCCATTGAATTAAATTTTTGTTTTCATACTTTTCAAAGTTTTGTTGTTTTAAATAAATTGTTGTTGTTGAGTCTATTCAAAAAAATATTAATACTAAAAATGGTTCAAAAAATCCGAGAATTATATTTTGAGAACTATTTTTGAAAAAAAAAATTTTGTGTCCTAACAACTTAAAAACATCATAGAAATAATCAGCGATCATTTTTATGTCGAAAAAAGTGAAAAAATCGCRAAAAAAAGTGAACCCTTCCAACTAGTATAGCGCCTAAAATTCAATGAAAAATCGATAATCGATTTCAGAAAGAAGAAGAATTGGTAGTGATTGTAGAGAGAGAAGCAATCAAATTCGCCTGATTTCCATAATTTTTTCTTTTCGAAACTTGTGATTTTTTCATCAAAATTTCCAAATCCTCTAGCATTTTTTTCTGCTCTTGTTCCATTCGTTTCTCATTCTCAATCCGTTCTCCGAGCACTTTTTTCTGCTCTTTCAGCACAAAAATCACTTTTTCAATTTCCTCGGATTTTTTGGTCCATTCGCGGAATTTCTCATCTTCATAATCACAATCCAGCTTTAGTTGTTTCAATTGATTCTGCAACAAATATTGATTTTTTGAAAAAAGTTTTAATTTTTTTTAAAATCAATAAAATCAATAAATGACCTAAAACTTTTTTGTGCATTTTTTAGGCCGCCAGAGACACTCACTTTGTGCATTCCACGACGAAAATCGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTGTTTTAAATAAATTGTTGTTG</pcr_primer_p1>
		<pcr_primer_p2>ATCGATTTTTCATTGAATTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGTTGTTTTAAATAAATTGTTGTTGTTGAGTCTATTCAAAAAAATATTAATACTAAAAATGGTTCAAAAAATCCGAGAATTATATTTTGAGAACTATTTTTGAAAAAAAAAATTTTGTGTCCTAACAACTTAAAAACATCATAGAAATAATCAGCGATCATTTTTATGTCGAAAAAAGTGAAAAAATCGCAAAAAAAAGTGAACCCTTCCAACTAGTATAGCGCCTAAAATTCAATGAAAAATCGAT</canonical_amplicon>
		<polymorphic_amplicon>TGTTGTTTTAAATAAATTGTTGTTGTTGAGTCTATTCAAAAAAATATTAATACTAAAAATGGTTCAAAAAATCCGAGAATTATATTTTGAGAACTATTTTTGAAAAAAAAAATTTTGTGTCCTAACAACTTAAAAACATCATAGAAATAATCAGCGATCATTTTTATGTCGAAAAAAGTGAAAAAATCGCRAAAAAAAGTGAACCCTTCCAACTAGTATAGCGCCTAAAATTCAATGAAAAATCGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31965</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>263712</contig_pos>
        <strand>+</strand>
        <context>TGATCGAGTG[G/T]CTRAAAATGC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGGATTTGAATTTTTTGAAAAGCTTGAAAATTAATCCATTTGATCGAGTG</left_flank>
        <right_flank>CTGAAAATGCTGAAAATCTGGAAATCGATTCAAAAATGTTGGAAAACTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAACAAGACGAGAGAGTGTGGAAAAAGAAGTGAGCGCGCAGAGAAAAATGTCTGCGTCTCTTTTTGTCTATTTTTTTTCGTTTGTTTGAAAAGGGAAATTTTGAATCTAACGATTTTTGGAGACTGGCAATCATGAAGACTACTCAAAAATTTCAGATGATCTTGGAATTTCCAAATTCTGAAAAGTCTGAAAAAACTATCAAATATCGATTGGAAGATGAAAAATCTCTGGAATTATTTTCAAAAGAATTGAAAACAATTTTAAAATTTCAGAAATCGATTTTACCAATATTTTGTCTAGATTTAGAAGACTTGGAGAAAACAAAGATACCGGAATTTTTCGAAATTTTTTCGAAAATTTTGAATTCCCGCGGAACAAAAAATTCACTAAAAATCAAAGAAATCTATTGTAACCAGCCTGAAATTCTGGAAATTTTCCAATTTTTGGATTTGAATTTTTTGAAAAGCTTGAAAATTAATCCATTTGATCGAGTGTCTGAAAATGCTGAAAATCTGGAAATCGATTCAAAAATGTTGGAAAACTTGGAAGATTTGGAAATTGGAAAATTCATTTTGAATCGAAAAATTCAAGAATTTTTCGGAATTCGGGATGTTGATGTTACAGTAATCCAGATTACTGTAGAGGATTTGATGGAGTTTGTAAATGTGGGTTTTTGAATTTTTAAACATTTGAATTTCAAAATTTCAGTTTCAGAATTTCGGGATTCCAGAGTTTTTAAAATTTTGAGATTTCGTGTTTTTGAATTTTCGAATTTTCTGAATTAATTGAAAATCCACGAAAAATCAATGACGTATTTTCGGTGACTTGACTCATTTTCGGGCATTTTTTTTCAGAAAAAATAAATATTTATTCAATTCATAACTCTCATTCTTTCAAGAACACTTTCAATTGTAACAAAACGCAAATCAATTTTTTTGCGTTGTGAATAATGACTGATTTCCAAAAGTTTAGTGGAATTCGGCACTTGGACCATC</canonical>
            <polymorphic>AAAAAAACAAGACGAGAGAGTGTGGAAAAAGAAGTGAGCGCGCAGAGAAAAATGTCTGCGTCTCTTTTTGTCTATTTTTTTTCGTTTGTTTGAAAAGGGAAATTTTGAATCTAACGATTTTTGGAGACTGGCAATCATGAAGACTACTCAAAAATTTCAGATGATCTTGGAATTTCCAAATTCTGAAAAGTCTGAAAAAACTATCAAATATCGATTGGAAGATGAAAAATCTCTGGAATTATTTTCAAAAGAATTGAAAACAATTTTAAAATTTCAGAAATCGATTTTACCAATATTTTGTCTAGATTTAGAAGACTTGGAGAAAACAAAGATACCGGAATTTTTCGAAATTTTTTCGAAAATTTTGAATTCCCGCGGAACAAAAAATTCACTAAAAATCAAAGAAATCTATTGTAACCAGCCTGAAATTCTGGAAATTTTCCAATTTTTGGATTTGAATTTTTTGAAAAGCTTGAAAATTAATCCATTTGATCGAGTGKCTGAAAATGCTGAAAATCTGGAAATCGATTCAAAAATGTTGGAAAACTTGGAAGATTTGGAAATTGGAAAATTCATTTTGAATCGAAAAATTCAAGAATTTTTCGGAATTCGGGATGTTGATGTTACAGTAATCCAGATTACTGTAGAGGATTTGATGGAGTTTGTAAATGTGGGTTTTTGAATTTTTAAACATTTGAATTTCAAAATTTCAGTTTCAGAATTTCGGGATTCCAGAGTTTTTAAAATTTTGAGATTTCGTGTTTTTGAATTTTCGAATTTTCTGAATTAATTGAAAATCCACGAAAAATCAATGACGTATTTTCGGTGACTTGACTCATTTTCGGGCATTTTTTTTCAGAAAAAATAAATATTTATTCAATTCATAACTCTCATTCTTTCAAGAACACTTTCAATTGTAACAAAACGCAAATCAATTTTTTTGCGTTGTGAATAATGACTGATTTCCAAAAGTTTAGTGGAATTCGGCACTTGGACCATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>226 159 142 113 103 83 75 65 25 9</canonical_bands>
                <polymorphic_bands>329 159 142 113 83 75 65 25 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTATTGTAACCAGCCTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCATCAAATCCTCTACAGTAATC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ATCTATTGTAACCAGCCTGAAATTCTGGAAATTTTCCAATTTTTGGATTTGAATTTTTTGAAAAGCTTGAAAATTAATCCATTTGATCGAGTGTCTGAAAATGCTGAAAATCTGGAAATCGATTCAAAAATGTTGGAAAACTTGGAAGATTTGGAAATTGGAAAATTCATTTTGAATCGAAAAATTCAAGAATTTTTCGGAATTCGGGATGTTGATGTTACAGTAATCCAGATTACTGTAGAGGATTTGATGG</canonical_amplicon>
		<polymorphic_amplicon>ATCTATTGTAACCAGCCTGAAATTCTGGAAATTTTCCAATTTTTGGATTTGAATTTTTTGAAAAGCTTGAAAATTAATCCATTTGATCGAGTGKCTGAAAATGCTGAAAATCTGGAAATCGATTCAAAAATGTTGGAAAACTTGGAAGATTTGGAAATTGGAAAATTCATTTTGAATCGAAAAATTCAAGAATTTTTCGGAATTCGGGATGTTGATGTTACAGTAATCCAGATTACTGTAGAGGATTTGATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31966</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>263715</contig_pos>
        <strand>+</strand>
        <context>TCGAGTGKCT[A/G]AAAATGCTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTGAATTTTTTGAAAAGCTTGAAAATTAATCCATTTGATCGAGTGTCT</left_flank>
        <right_flank>AAAATGCTGAAAATCTGGAAATCGATTCAAAAATGTTGGAAAACTTGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACAAGACGAGAGAGTGTGGAAAAAGAAGTGAGCGCGCAGAGAAAAATGTCTGCGTCTCTTTTTGTCTATTTTTTTTCGTTTGTTTGAAAAGGGAAATTTTGAATCTAACGATTTTTGGAGACTGGCAATCATGAAGACTACTCAAAAATTTCAGATGATCTTGGAATTTCCAAATTCTGAAAAGTCTGAAAAAACTATCAAATATCGATTGGAAGATGAAAAATCTCTGGAATTATTTTCAAAAGAATTGAAAACAATTTTAAAATTTCAGAAATCGATTTTACCAATATTTTGTCTAGATTTAGAAGACTTGGAGAAAACAAAGATACCGGAATTTTTCGAAATTTTTTCGAAAATTTTGAATTCCCGCGGAACAAAAAATTCACTAAAAATCAAAGAAATCTATTGTAACCAGCCTGAAATTCTGGAAATTTTCCAATTTTTGGATTTGAATTTTTTGAAAAGCTTGAAAATTAATCCATTTGATCGAGTGTCTGAAAATGCTGAAAATCTGGAAATCGATTCAAAAATGTTGGAAAACTTGGAAGATTTGGAAATTGGAAAATTCATTTTGAATCGAAAAATTCAAGAATTTTTCGGAATTCGGGATGTTGATGTTACAGTAATCCAGATTACTGTAGAGGATTTGATGGAGTTTGTAAATGTGGGTTTTTGAATTTTTAAACATTTGAATTTCAAAATTTCAGTTTCAGAATTTCGGGATTCCAGAGTTTTTAAAATTTTGAGATTTCGTGTTTTTGAATTTTCGAATTTTCTGAATTAATTGAAAATCCACGAAAAATCAATGACGTATTTTCGGTGACTTGACTCATTTTCGGGCATTTTTTTTCAGAAAAAATAAATATTTATTCAATTCATAACTCTCATTCTTTCAAGAACACTTTCAATTGTAACAAAACGCAAATCAATTTTTTTGCGTTGTGAATAATGACTGATTTCCAAAAGTTTAGTGGAATTCGGCACTTGGACCATCCAT</canonical>
            <polymorphic>AAAACAAGACGAGAGAGTGTGGAAAAAGAAGTGAGCGCGCAGAGAAAAATGTCTGCGTCTCTTTTTGTCTATTTTTTTTCGTTTGTTTGAAAAGGGAAATTTTGAATCTAACGATTTTTGGAGACTGGCAATCATGAAGACTACTCAAAAATTTCAGATGATCTTGGAATTTCCAAATTCTGAAAAGTCTGAAAAAACTATCAAATATCGATTGGAAGATGAAAAATCTCTGGAATTATTTTCAAAAGAATTGAAAACAATTTTAAAATTTCAGAAATCGATTTTACCAATATTTTGTCTAGATTTAGAAGACTTGGAGAAAACAAAGATACCGGAATTTTTCGAAATTTTTTCGAAAATTTTGAATTCCCGCGGAACAAAAAATTCACTAAAAATCAAAGAAATCTATTGTAACCAGCCTGAAATTCTGGAAATTTTCCAATTTTTGGATTTGAATTTTTTGAAAAGCTTGAAAATTAATCCATTTGATCGAGTGTCTRAAAATGCTGAAAATCTGGAAATCGATTCAAAAATGTTGGAAAACTTGGAAGATTTGGAAATTGGAAAATTCATTTTGAATCGAAAAATTCAAGAATTTTTCGGAATTCGGGATGTTGATGTTACAGTAATCCAGATTACTGTAGAGGATTTGATGGAGTTTGTAAATGTGGGTTTTTGAATTTTTAAACATTTGAATTTCAAAATTTCAGTTTCAGAATTTCGGGATTCCAGAGTTTTTAAAATTTTGAGATTTCGTGTTTTTGAATTTTCGAATTTTCTGAATTAATTGAAAATCCACGAAAAATCAATGACGTATTTTCGGTGACTTGACTCATTTTCGGGCATTTTTTTTCAGAAAAAATAAATATTTATTCAATTCATAACTCTCATTCTTTCAAGAACACTTTCAATTGTAACAAAACGCAAATCAATTTTTTTGCGTTGTGAATAATGACTGATTTCCAAAAGTTTAGTGGAATTCGGCACTTGGACCATCCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>226 156 145 113 103 83 75 65 25 9</canonical_bands>
                <polymorphic_bands>329 156 145 113 83 75 65 25 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTATTGTAACCAGCCTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCATCAAATCCTCTACAGTAATC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ATCTATTGTAACCAGCCTGAAATTCTGGAAATTTTCCAATTTTTGGATTTGAATTTTTTGAAAAGCTTGAAAATTAATCCATTTGATCGAGTGTCTGAAAATGCTGAAAATCTGGAAATCGATTCAAAAATGTTGGAAAACTTGGAAGATTTGGAAATTGGAAAATTCATTTTGAATCGAAAAATTCAAGAATTTTTCGGAATTCGGGATGTTGATGTTACAGTAATCCAGATTACTGTAGAGGATTTGATGG</canonical_amplicon>
		<polymorphic_amplicon>ATCTATTGTAACCAGCCTGAAATTCTGGAAATTTTCCAATTTTTGGATTTGAATTTTTTGAAAAGCTTGAAAATTAATCCATTTGATCGAGTGTCTRAAAATGCTGAAAATCTGGAAATCGATTCAAAAATGTTGGAAAACTTGGAAGATTTGGAAATTGGAAAATTCATTTTGAATCGAAAAATTCAAGAATTTTTCGGAATTCGGGATGTTGATGTTACAGTAATCCAGATTACTGTAGAGGATTTGATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31967</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>263790</contig_pos>
        <strand>+</strand>
        <context>AAAATTCATT[G/T]TGAATCGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTCAAAAATGTTGGAAAACTTGGAAGATTTGGAAATTGGAAAATTCATT</left_flank>
        <right_flank>TGAATCGAAAAATTCAAGAATTTTTCGGAATTCGGGATGTTGATGTTACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCGTTTGTTTGAAAAGGGAAATTTTGAATCTAACGATTTTTGGAGACTGGCAATCATGAAGACTACTCAAAAATTTCAGATGATCTTGGAATTTCCAAATTCTGAAAAGTCTGAAAAAACTATCAAATATCGATTGGAAGATGAAAAATCTCTGGAATTATTTTCAAAAGAATTGAAAACAATTTTAAAATTTCAGAAATCGATTTTACCAATATTTTGTCTAGATTTAGAAGACTTGGAGAAAACAAAGATACCGGAATTTTTCGAAATTTTTTCGAAAATTTTGAATTCCCGCGGAACAAAAAATTCACTAAAAATCAAAGAAATCTATTGTAACCAGCCTGAAATTCTGGAAATTTTCCAATTTTTGGATTTGAATTTTTTGAAAAGCTTGAAAATTAATCCATTTGATCGAGTGTCTGAAAATGCTGAAAATCTGGAAATCGATTCAAAAATGTTGGAAAACTTGGAAGATTTGGAAATTGGAAAATTCATTTTGAATCGAAAAATTCAAGAATTTTTCGGAATTCGGGATGTTGATGTTACAGTAATCCAGATTACTGTAGAGGATTTGATGGAGTTTGTAAATGTGGGTTTTTGAATTTTTAAACATTTGAATTTCAAAATTTCAGTTTCAGAATTTCGGGATTCCAGAGTTTTTAAAATTTTGAGATTTCGTGTTTTTGAATTTTCGAATTTTCTGAATTAATTGAAAATCCACGAAAAATCAATGACGTATTTTCGGTGACTTGACTCATTTTCGGGCATTTTTTTTCAGAAAAAATAAATATTTATTCAATTCATAACTCTCATTCTTTCAAGAACACTTTCAATTGTAACAAAACGCAAATCAATTTTTTTGCGTTGTGAATAATGACTGATTTCCAAAAGTTTAGTGGAATTCGGCACTTGGACCATCCATCGAGCGAATTCTCCAGTTAAATTCAAATTTCCATGATTCACAGGTCCCAGGCGATTCAAAATTTGTTGGTCTCCG</canonical>
            <polymorphic>TTTTCGTTTGTTTGAAAAGGGAAATTTTGAATCTAACGATTTTTGGAGACTGGCAATCATGAAGACTACTCAAAAATTTCAGATGATCTTGGAATTTCCAAATTCTGAAAAGTCTGAAAAAACTATCAAATATCGATTGGAAGATGAAAAATCTCTGGAATTATTTTCAAAAGAATTGAAAACAATTTTAAAATTTCAGAAATCGATTTTACCAATATTTTGTCTAGATTTAGAAGACTTGGAGAAAACAAAGATACCGGAATTTTTCGAAATTTTTTCGAAAATTTTGAATTCCCGCGGAACAAAAAATTCACTAAAAATCAAAGAAATCTATTGTAACCAGCCTGAAATTCTGGAAATTTTCCAATTTTTGGATTTGAATTTTTTGAAAAGCTTGAAAATTAATCCATTTGATCGAGTGTCTGAAAATGCTGAAAATCTGGAAATCGATTCAAAAATGTTGGAAAACTTGGAAGATTTGGAAATTGGAAAATTCATTKTGAATCGAAAAATTCAAGAATTTTTCGGAATTCGGGATGTTGATGTTACAGTAATCCAGATTACTGTAGAGGATTTGATGGAGTTTGTAAATGTGGGTTTTTGAATTTTTAAACATTTGAATTTCAAAATTTCAGTTTCAGAATTTCGGGATTCCAGAGTTTTTAAAATTTTGAGATTTCGTGTTTTTGAATTTTCGAATTTTCTGAATTAATTGAAAATCCACGAAAAATCAATGACGTATTTTCGGTGACTTGACTCATTTTCGGGCATTTTTTTTCAGAAAAAATAAATATTTATTCAATTCATAACTCTCATTCTTTCAAGAACACTTTCAATTGTAACAAAACGCAAATCAATTTTTTTGCGTTGTGAATAATGACTGATTTCCAAAAGTTTAGTGGAATTCGGCACTTGGACCATCCATCGAGCGAATTCTCCAGTTAAATTCAAATTTCCATGATTCACAGGTCCCAGGCGATTCAAAATTTGTTGGTCTCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTATTGTAACCAGCCTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCATCAAATCCTCTACAGTAATC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ATCTATTGTAACCAGCCTGAAATTCTGGAAATTTTCCAATTTTTGGATTTGAATTTTTTGAAAAGCTTGAAAATTAATCCATTTGATCGAGTGTCTGAAAATGCTGAAAATCTGGAAATCGATTCAAAAATGTTGGAAAACTTGGAAGATTTGGAAATTGGAAAATTCATTTTGAATCGAAAAATTCAAGAATTTTTCGGAATTCGGGATGTTGATGTTACAGTAATCCAGATTACTGTAGAGGATTTGATGG</canonical_amplicon>
		<polymorphic_amplicon>ATCTATTGTAACCAGCCTGAAATTCTGGAAATTTTCCAATTTTTGGATTTGAATTTTTTGAAAAGCTTGAAAATTAATCCATTTGATCGAGTGTCTGAAAATGCTGAAAATCTGGAAATCGATTCAAAAATGTTGGAAAACTTGGAAGATTTGGAAATTGGAAAATTCATTKTGAATCGAAAAATTCAAGAATTTTTCGGAATTCGGGATGTTGATGTTACAGTAATCCAGATTACTGTAGAGGATTTGATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31968</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>263828</contig_pos>
        <strand>+</strand>
        <context>GAATTCGGGA[C/T]GTTGATGTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAAAATTCATTTTGAATCGAAAAATTCAAGAATTTTTCGGAATTCGGGA</left_flank>
        <right_flank>GTTGATGTTACAGTAATCCAGATTACTGTAGAGGATTTGATGGAGTTTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTGGAGACTGGCAATCATGAAGACTACTCAAAAATTTCAGATGATCTTGGAATTTCCAAATTCTGAAAAGTCTGAAAAAACTATCAAATATCGATTGGAAGATGAAAAATCTCTGGAATTATTTTCAAAAGAATTGAAAACAATTTTAAAATTTCAGAAATCGATTTTACCAATATTTTGTCTAGATTTAGAAGACTTGGAGAAAACAAAGATACCGGAATTTTTCGAAATTTTTTCGAAAATTTTGAATTCCCGCGGAACAAAAAATTCACTAAAAATCAAAGAAATCTATTGTAACCAGCCTGAAATTCTGGAAATTTTCCAATTTTTGGATTTGAATTTTTTGAAAAGCTTGAAAATTAATCCATTTGATCGAGTGTCTGAAAATGCTGAAAATCTGGAAATCGATTCAAAAATGTTGGAAAACTTGGAAGATTTGGAAATTGGAAAATTCATTTTGAATCGAAAAATTCAAGAATTTTTCGGAATTCGGGATGTTGATGTTACAGTAATCCAGATTACTGTAGAGGATTTGATGGAGTTTGTAAATGTGGGTTTTTGAATTTTTAAACATTTGAATTTCAAAATTTCAGTTTCAGAATTTCGGGATTCCAGAGTTTTTAAAATTTTGAGATTTCGTGTTTTTGAATTTTCGAATTTTCTGAATTAATTGAAAATCCACGAAAAATCAATGACGTATTTTCGGTGACTTGACTCATTTTCGGGCATTTTTTTTCAGAAAAAATAAATATTTATTCAATTCATAACTCTCATTCTTTCAAGAACACTTTCAATTGTAACAAAACGCAAATCAATTTTTTTGCGTTGTGAATAATGACTGATTTCCAAAAGTTTAGTGGAATTCGGCACTTGGACCATCCATCGAGCGAATTCTCCAGTTAAATTCAAATTTCCATGATTCACAGGTCCCAGGCGATTCAAAATTTGTTGGTCTCCGACGAAATTTTGATAGTGGAATGATAAAAATCCAAGGTT</canonical>
            <polymorphic>ATTTTTGGAGACTGGCAATCATGAAGACTACTCAAAAATTTCAGATGATCTTGGAATTTCCAAATTCTGAAAAGTCTGAAAAAACTATCAAATATCGATTGGAAGATGAAAAATCTCTGGAATTATTTTCAAAAGAATTGAAAACAATTTTAAAATTTCAGAAATCGATTTTACCAATATTTTGTCTAGATTTAGAAGACTTGGAGAAAACAAAGATACCGGAATTTTTCGAAATTTTTTCGAAAATTTTGAATTCCCGCGGAACAAAAAATTCACTAAAAATCAAAGAAATCTATTGTAACCAGCCTGAAATTCTGGAAATTTTCCAATTTTTGGATTTGAATTTTTTGAAAAGCTTGAAAATTAATCCATTTGATCGAGTGTCTGAAAATGCTGAAAATCTGGAAATCGATTCAAAAATGTTGGAAAACTTGGAAGATTTGGAAATTGGAAAATTCATTTTGAATCGAAAAATTCAAGAATTTTTCGGAATTCGGGAYGTTGATGTTACAGTAATCCAGATTACTGTAGAGGATTTGATGGAGTTTGTAAATGTGGGTTTTTGAATTTTTAAACATTTGAATTTCAAAATTTCAGTTTCAGAATTTCGGGATTCCAGAGTTTTTAAAATTTTGAGATTTCGTGTTTTTGAATTTTCGAATTTTCTGAATTAATTGAAAATCCACGAAAAATCAATGACGTATTTTCGGTGACTTGACTCATTTTCGGGCATTTTTTTTCAGAAAAAATAAATATTTATTCAATTCATAACTCTCATTCTTTCAAGAACACTTTCAATTGTAACAAAACGCAAATCAATTTTTTTGCGTTGTGAATAATGACTGATTTCCAAAAGTTTAGTGGAATTCGGCACTTGGACCATCCATCGAGCGAATTCTCCAGTTAAATTCAAATTTCCATGATTCACAGGTCCCAGGCGATTCAAAATTTGTTGGTCTCCGACGAAATTTTGATAGTGGAATGATAAAAATCCAAGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAACCAGCCTGAAATTCT</pcr_primer_p1>
		<pcr_primer_p2>ATTTACAAACTCCATCAAATCCT</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>TGTAACCAGCCTGAAATTCTGGAAATTTTCCAATTTTTGGATTTGAATTTTTTGAAAAGCTTGAAAATTAATCCATTTGATCGAGTGTCTGAAAATGCTGAAAATCTGGAAATCGATTCAAAAATGTTGGAAAACTTGGAAGATTTGGAAATTGGAAAATTCATTTTGAATCGAAAAATTCAAGAATTTTTCGGAATTCGGGATGTTGATGTTACAGTAATCCAGATTACTGTAGAGGATTTGATGGAGTTTGTAAAT</canonical_amplicon>
		<polymorphic_amplicon>TGTAACCAGCCTGAAATTCTGGAAATTTTCCAATTTTTGGATTTGAATTTTTTGAAAAGCTTGAAAATTAATCCATTTGATCGAGTGTCTGAAAATGCTGAAAATCTGGAAATCGATTCAAAAATGTTGGAAAACTTGGAAGATTTGGAAATTGGAAAATTCATTTTGAATCGAAAAATTCAAGAATTTTTCGGAATTCGGGAYGTTGATGTTACAGTAATCCAGATTACTGTAGAGGATTTGATGGAGTTTGTAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31969</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>277493</contig_pos>
        <strand></strand>
        <context>attaaagttc[G/A]gcttgttgag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTGTCTGAAATTTCAGTTGTTTTTTTTGAAATAGTGAAATTAAAGTTC</left_flank>
        <right_flank>GCTTGTTGAGAGCTTCAAAATGAGTATAAACATGGCAAATTTTCAAAAAC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCCGAGTTCGAAAATTCAAGTTTCAACTGCATAAAACTAACCGTTTCAGCCAAAAAATCCAAAATTCCGTAGAAAATCTCAAAAAGCGAAACGCCAATCAATAAATACTTGTAATTTCCCATTTGCGCGGGAGACTTGAAAATTATCAAATTTATCAATAAAAAATTGGCCAGTACTGAAATCGGAGCAGTGTACAAAGGGAGGGATTTTGAGAAAATATCCATTTTCAGCCAAAAAAAAAATTTTTCGGAATAAATTTTATTTCGTATAGTCATAACTGAAACAAGGAAATTAGTAGCTTAAAAACAATTTTCTTATATTTCTCCTGGGAATTTCGTACCTAGAAATTTCTTTATGGAAAACAGTCTGATACGAAAAATGTTTTTTATTATGTTATATTTTTTTGGAAATCAGAGAACCGAACAAAAAAACACTTCCAGATCTGGAATTTTGTCTGAAATTTCAGTTGTTTTTTTTGAAATAGTGAAATTAAAGTTCGGCTTGTTGAGAGCTTCAAAATGAGTATAAACATGGCAAATTTTCAAAAACATTTTTTTTTTGAAAATTTCGGGATTTCGAAATTTTTCATTCCAAATGTTTATGCTAGAACGATGGAACTTGAATTTTCGACATCAGCAAAAAACTCCCGTCAAAATGAGTATAAACACGACCTACTTTGAAAATGAGCCGGCCTGCACGGTCTAGGCCGCTGCGGGCCGACCGGCTCAAAAGTAGGTCATGATTATACTCATTTTGACGGGAATTTTATGGTGAATCTGAATTTTTTATTTTCAAAAGTTCAAATCTTTCCAGAGAAAAGTTTCAGACAATTTTTCGAAAATTCCCTAGATTTTTTTTGTGGAATTTGACCTTTCTTAGACAAGAATTTTGAGATTGAAGAGAGTTTAAAAATCTGGAAAGTGGTTCAAAAACGTGAAAAACCCAGAAAATCATCATAAATTCAAAGGTCAAAGATAACTTCCTGCCACGTTGAAAAGT</canonical>
            <polymorphic>CGCCGAGTTCGAAAATTCAAGTTTCAACTGCATAAAACTAACCGTTTCAGCCAAAAAATCCAAAATTCCGTAGAAAATCTCAAAAAGCGAAACGCCAATCAATAAATACTTGTAATTTCCCATTTGCGCGGGAGACTTGAAAATTATCAAATTTATCAATAAAAAATTGGCCAGTACTGAAATCGGAGCAGTGTACAAAGGGAGGGATTTTGAGAAAATATCCATTTTCAGCCAAAAAAAAAATTTTTCGGAATAAATTTTATTTCGTATAGTCATAACTGAAACAAGGAAATTAGTAGCTTAAAAACAATTTTCTTATATTTCTCCTGGGAATTTCGTACCTAGAAATTTCTTTATGGAAAACAGTCTGATACGAAAAATGTTTTTTATTATGTTATATTTTTTTGGAAATCAGAGAACCGAACAAAAAAACACTTCCAGATCTGGAATTTTGTCTGAAATTTCAGTTGTTTTTTTTGAAATAGTGAAATTAAAGTTCRGCTTGTTGAGAGCTTCAAAATGAGTATAAACATGGCAAATTTTCAAAAACATTTTTTTTTTGAAAATTTCGGGATTTCGAAATTTTTCATTCCAAATGTTTATGCTAGAACGATGGAACTTGAATTTTCGACATCAGCAAAAAACTCCCGTCAAAATGAGTATAAACACGACCTACTTTGAAAATGAGCCGGCCTGCACGGTCTAGGCCGCTGCGGGCCGACCGGCTCAAAAGTAGGTCATGATTATACTCATTTTGACGGGAATTTTATGGTGAATCTGAATTTTTTATTTTCAAAAGTTCAAATCTTTCCAGAGAAAAGTTTCAGACAATTTTTCGAAAATTCCCTAGATTTTTTTTGTGGAATTTGACCTTTCTTAGACAAGAATTTTGAGATTGAAGAGAGTTTAAAAATCTGGAAAGTGGTTCAAAAACGTGAAAAACCCAGAAAATCATCATAAATTCAAAGGTCAAAGATAACTTCCTGCCACGTTGAAAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>275 202 176 120 68 61 50 15 11 10 8 4</canonical_bands>
                <polymorphic_bands>275 213 176 120 68 61 50 15 10 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCAGAGAACCGAACAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAATTGTCTGAAACTTTTCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>AATCAGAGAACCGAACAAAAAAACACTTCCAGATCTGGAATTTTGTCTGAAATTTCAGTTGTTTTTTTTGAAATAGTGAAATTAAAGTTCGGCTTGTTGAGAGCTTCAAAATGAGTATAAACATGGCAAATTTTCAAAAACATTTTTTTTTTGAAAATTTCGGGATTTCGAAATTTTTCATTCCAAATGTTTATGCTAGAACGATGGAACTTGAATTTTCGACATCAGCAAAAAACTCCCGTCAAAATGAGTATAAACACGACCTACTTTGAAAATGAGCCGGCCTGCACGGTCTAGGCCGCTGCGGGCCGACCGGCTCAAAAGTAGGTCATGATTATACTCATTTTGACGGGAATTTTATGGTGAATCTGAATTTTTTATTTTCAAAAGTTCAAATCTTTCCAGAGAAAAGTTTCAGACAATTT</canonical_amplicon>
		<polymorphic_amplicon>AATCAGAGAACCGAACAAAAAAACACTTCCAGATCTGGAATTTTGTCTGAAATTTCAGTTGTTTTTTTTGAAATAGTGAAATTAAAGTTCRGCTTGTTGAGAGCTTCAAAATGAGTATAAACATGGCAAATTTTCAAAAACATTTTTTTTTTGAAAATTTCGGGATTTCGAAATTTTTCATTCCAAATGTTTATGCTAGAACGATGGAACTTGAATTTTCGACATCAGCAAAAAACTCCCGTCAAAATGAGTATAAACACGACCTACTTTGAAAATGAGCCGGCCTGCACGGTCTAGGCCGCTGCGGGCCGACCGGCTCAAAAGTAGGTCATGATTATACTCATTTTGACGGGAATTTTATGGTGAATCTGAATTTTTTATTTTCAAAAGTTCAAATCTTTCCAGAGAAAAGTTTCAGACAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31970</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>277576</contig_pos>
        <strand></strand>
        <context>gatttcgaaa[T/A]ttttcattcc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGGCAAATTTTCAAAAACATTTTTTTTTTGAAAATTTCGGGATTTCGAAA</left_flank>
        <right_flank>TTTTCATTCCAAATGTTTATGCTAGAACGATGGAACTTGAATTTTCGACA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGCGAAACGCCAATCAATAAATACTTGTAATTTCCCATTTGCGCGGGAGACTTGAAAATTATCAAATTTATCAATAAAAAATTGGCCAGTACTGAAATCGGAGCAGTGTACAAAGGGAGGGATTTTGAGAAAATATCCATTTTCAGCCAAAAAAAAAATTTTTCGGAATAAATTTTATTTCGTATAGTCATAACTGAAACAAGGAAATTAGTAGCTTAAAAACAATTTTCTTATATTTCTCCTGGGAATTTCGTACCTAGAAATTTCTTTATGGAAAACAGTCTGATACGAAAAATGTTTTTTATTATGTTATATTTTTTTGGAAATCAGAGAACCGAACAAAAAAACACTTCCAGATCTGGAATTTTGTCTGAAATTTCAGTTGTTTTTTTTGAAATAGTGAAATTAAAGTTCGGCTTGTTGAGAGCTTCAAAATGAGTATAAACATGGCAAATTTTCAAAAACATTTTTTTTTTGAAAATTTCGGGATTTCGAAATTTTTCATTCCAAATGTTTATGCTAGAACGATGGAACTTGAATTTTCGACATCAGCAAAAAACTCCCGTCAAAATGAGTATAAACACGACCTACTTTGAAAATGAGCCGGCCTGCACGGTCTAGGCCGCTGCGGGCCGACCGGCTCAAAAGTAGGTCATGATTATACTCATTTTGACGGGAATTTTATGGTGAATCTGAATTTTTTATTTTCAAAAGTTCAAATCTTTCCAGAGAAAAGTTTCAGACAATTTTTCGAAAATTCCCTAGATTTTTTTTGTGGAATTTGACCTTTCTTAGACAAGAATTTTGAGATTGAAGAGAGTTTAAAAATCTGGAAAGTGGTTCAAAAACGTGAAAAACCCAGAAAATCATCATAAATTCAAAGGTCAAAGATAACTTCCTGCCACGTTGAAAAGTTTTGAAATTAAAAATTATGATTTTTCTTTTTTTCAAATTCATTACTTTCGCGCCCTAAATCTTAAATCCCAAAAAACGCTCTA</canonical>
            <polymorphic>AAAGCGAAACGCCAATCAATAAATACTTGTAATTTCCCATTTGCGCGGGAGACTTGAAAATTATCAAATTTATCAATAAAAAATTGGCCAGTACTGAAATCGGAGCAGTGTACAAAGGGAGGGATTTTGAGAAAATATCCATTTTCAGCCAAAAAAAAAATTTTTCGGAATAAATTTTATTTCGTATAGTCATAACTGAAACAAGGAAATTAGTAGCTTAAAAACAATTTTCTTATATTTCTCCTGGGAATTTCGTACCTAGAAATTTCTTTATGGAAAACAGTCTGATACGAAAAATGTTTTTTATTATGTTATATTTTTTTGGAAATCAGAGAACCGAACAAAAAAACACTTCCAGATCTGGAATTTTGTCTGAAATTTCAGTTGTTTTTTTTGAAATAGTGAAATTAAAGTTCGGCTTGTTGAGAGCTTCAAAATGAGTATAAACATGGCAAATTTTCAAAAACATTTTTTTTTTGAAAATTTCGGGATTTCGAAAWTTTTCATTCCAAATGTTTATGCTAGAACGATGGAACTTGAATTTTCGACATCAGCAAAAAACTCCCGTCAAAATGAGTATAAACACGACCTACTTTGAAAATGAGCCGGCCTGCACGGTCTAGGCCGCTGCGGGCCGACCGGCTCAAAAGTAGGTCATGATTATACTCATTTTGACGGGAATTTTATGGTGAATCTGAATTTTTTATTTTCAAAAGTTCAAATCTTTCCAGAGAAAAGTTTCAGACAATTTTTCGAAAATTCCCTAGATTTTTTTTGTGGAATTTGACCTTTCTTAGACAAGAATTTTGAGATTGAAGAGAGTTTAAAAATCTGGAAAGTGGTTCAAAAACGTGAAAAACCCAGAAAATCATCATAAATTCAAAGGTCAAAGATAACTTCCTGCCACGTTGAAAAGTTTTGAAATTAAAAATTATGATTTTTCTTTTTTTCAAATTCATTACTTTCGCGCCCTAAATCTTAAATCCCAAAAAACGCTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>140 101 92 78 76 76 74 66 60 48 42 27 23 22 18 16 15 14 12</canonical_bands>
                <polymorphic_bands>140 101 92 78 76 76 74 66 60 58 48 27 23 22 18 15 14 12</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>140 101 77 74 49 49 48 46 42 35 30 29 28 27 23 23 23 22 18 18 16 15 15 14 12 11 8 7</canonical_bands>
                <polymorphic_bands>140 101 77 74 58 49 49 48 46 35 30 29 28 27 23 23 23 22 18 18 15 15 14 12 11 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCAGAGAACCGAACAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAATTGTCTGAAACTTTTCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>AATCAGAGAACCGAACAAAAAAACACTTCCAGATCTGGAATTTTGTCTGAAATTTCAGTTGTTTTTTTTGAAATAGTGAAATTAAAGTTCGGCTTGTTGAGAGCTTCAAAATGAGTATAAACATGGCAAATTTTCAAAAACATTTTTTTTTTGAAAATTTCGGGATTTCGAAATTTTTCATTCCAAATGTTTATGCTAGAACGATGGAACTTGAATTTTCGACATCAGCAAAAAACTCCCGTCAAAATGAGTATAAACACGACCTACTTTGAAAATGAGCCGGCCTGCACGGTCTAGGCCGCTGCGGGCCGACCGGCTCAAAAGTAGGTCATGATTATACTCATTTTGACGGGAATTTTATGGTGAATCTGAATTTTTTATTTTCAAAAGTTCAAATCTTTCCAGAGAAAAGTTTCAGACAATTT</canonical_amplicon>
		<polymorphic_amplicon>AATCAGAGAACCGAACAAAAAAACACTTCCAGATCTGGAATTTTGTCTGAAATTTCAGTTGTTTTTTTTGAAATAGTGAAATTAAAGTTCGGCTTGTTGAGAGCTTCAAAATGAGTATAAACATGGCAAATTTTCAAAAACATTTTTTTTTTGAAAATTTCGGGATTTCGAAAWTTTTCATTCCAAATGTTTATGCTAGAACGATGGAACTTGAATTTTCGACATCAGCAAAAAACTCCCGTCAAAATGAGTATAAACACGACCTACTTTGAAAATGAGCCGGCCTGCACGGTCTAGGCCGCTGCGGGCCGACCGGCTCAAAAGTAGGTCATGATTATACTCATTTTGACGGGAATTTTATGGTGAATCTGAATTTTTTATTTTCAAAAGTTCAAATCTTTCCAGAGAAAAGTTTCAGACAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31971</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>277779</contig_pos>
        <strand></strand>
        <context>atctgaattt[T/C]tTATTTTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGTCATGATTATACTCATTTTGACGGGAATTTTATGGTGAATCTGAATTT</left_flank>
        <right_flank>TTATTTTCAAAAGTTCAAATCTTTCCAGAGAAAAGTTTCAGACAATTTTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGAAATTAGTAGCTTAAAAACAATTTTCTTATATTTCTCCTGGGAATTTCGTACCTAGAAATTTCTTTATGGAAAACAGTCTGATACGAAAAATGTTTTTTATTATGTTATATTTTTTTGGAAATCAGAGAACCGAACAAAAAAACACTTCCAGATCTGGAATTTTGTCTGAAATTTCAGTTGTTTTTTTTGAAATAGTGAAATTAAAGTTCGGCTTGTTGAGAGCTTCAAAATGAGTATAAACATGGCAAATTTTCAAAAACATTTTTTTTTTGAAAATTTCGGGATTTCGAAATTTTTCATTCCAAATGTTTATGCTAGAACGATGGAACTTGAATTTTCGACATCAGCAAAAAACTCCCGTCAAAATGAGTATAAACACGACCTACTTTGAAAATGAGCCGGCCTGCACGGTCTAGGCCGCTGCGGGCCGACCGGCTCAAAAGTAGGTCATGATTATACTCATTTTGACGGGAATTTTATGGTGAATCTGAATTTTTTATTTTCAAAAGTTCAAATCTTTCCAGAGAAAAGTTTCAGACAATTTTTCGAAAATTCCCTAGATTTTTTTTGTGGAATTTGACCTTTCTTAGACAAGAATTTTGAGATTGAAGAGAGTTTAAAAATCTGGAAAGTGGTTCAAAAACGTGAAAAACCCAGAAAATCATCATAAATTCAAAGGTCAAAGATAACTTCCTGCCACGTTGAAAAGTTTTGAAATTAAAAATTATGATTTTTCTTTTTTTCAAATTCATTACTTTCGCGCCCTAAATCTTAAATCCCAAAAAACGCTCTATCAAAAAATGGTTTCGTGGAGCCAGTTTCCACCTGAAATAAAGCGAAAAATCGCTGAAAATTATGATTTCATGAGCAGGTAATTAAGTGATAATTAGTCCCCTAATTACCCTAATTAAATCTAGGATTTCAATGAGAAATGCATGCCATGTGGATCGTCAAATTGTGGATTCAACGAAATTTCGAATTCCACGTGTCAGATTT</canonical>
            <polymorphic>AGGAAATTAGTAGCTTAAAAACAATTTTCTTATATTTCTCCTGGGAATTTCGTACCTAGAAATTTCTTTATGGAAAACAGTCTGATACGAAAAATGTTTTTTATTATGTTATATTTTTTTGGAAATCAGAGAACCGAACAAAAAAACACTTCCAGATCTGGAATTTTGTCTGAAATTTCAGTTGTTTTTTTTGAAATAGTGAAATTAAAGTTCGGCTTGTTGAGAGCTTCAAAATGAGTATAAACATGGCAAATTTTCAAAAACATTTTTTTTTTGAAAATTTCGGGATTTCGAAATTTTTCATTCCAAATGTTTATGCTAGAACGATGGAACTTGAATTTTCGACATCAGCAAAAAACTCCCGTCAAAATGAGTATAAACACGACCTACTTTGAAAATGAGCCGGCCTGCACGGTCTAGGCCGCTGCGGGCCGACCGGCTCAAAAGTAGGTCATGATTATACTCATTTTGACGGGAATTTTATGGTGAATCTGAATTTYTTATTTTCAAAAGTTCAAATCTTTCCAGAGAAAAGTTTCAGACAATTTTTCGAAAATTCCCTAGATTTTTTTTGTGGAATTTGACCTTTCTTAGACAAGAATTTTGAGATTGAAGAGAGTTTAAAAATCTGGAAAGTGGTTCAAAAACGTGAAAAACCCAGAAAATCATCATAAATTCAAAGGTCAAAGATAACTTCCTGCCACGTTGAAAAGTTTTGAAATTAAAAATTATGATTTTTCTTTTTTTCAAATTCATTACTTTCGCGCCCTAAATCTTAAATCCCAAAAAACGCTCTATCAAAAAATGGTTTCGTGGAGCCAGTTTCCACCTGAAATAAAGCGAAAAATCGCTGAAAATTATGATTTCATGAGCAGGTAATTAAGTGATAATTAGTCCCCTAATTACCCTAATTAAATCTAGGATTTCAATGAGAAATGCATGCCATGTGGATCGTCAAATTGTGGATTCAACGAAATTTCGAATTCCACGTGTCAGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAGAGAACCGAACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGGTCAAATTCCACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>465</pcr_amplicon_size>
		<canonical_amplicon>ATCAGAGAACCGAACAAAAAAACACTTCCAGATCTGGAATTTTGTCTGAAATTTCAGTTGTTTTTTTTGAAATAGTGAAATTAAAGTTCGGCTTGTTGAGAGCTTCAAAATGAGTATAAACATGGCAAATTTTCAAAAACATTTTTTTTTTGAAAATTTCGGGATTTCGAAATTTTTCATTCCAAATGTTTATGCTAGAACGATGGAACTTGAATTTTCGACATCAGCAAAAAACTCCCGTCAAAATGAGTATAAACACGACCTACTTTGAAAATGAGCCGGCCTGCACGGTCTAGGCCGCTGCGGGCCGACCGGCTCAAAAGTAGGTCATGATTATACTCATTTTGACGGGAATTTTATGGTGAATCTGAATTTTTTATTTTCAAAAGTTCAAATCTTTCCAGAGAAAAGTTTCAGACAATTTTTCGAAAATTCCCTAGATTTTTTTTGTGGAATTTGACCTTT</canonical_amplicon>
		<polymorphic_amplicon>ATCAGAGAACCGAACAAAAAAACACTTCCAGATCTGGAATTTTGTCTGAAATTTCAGTTGTTTTTTTTGAAATAGTGAAATTAAAGTTCGGCTTGTTGAGAGCTTCAAAATGAGTATAAACATGGCAAATTTTCAAAAACATTTTTTTTTTGAAAATTTCGGGATTTCGAAATTTTTCATTCCAAATGTTTATGCTAGAACGATGGAACTTGAATTTTCGACATCAGCAAAAAACTCCCGTCAAAATGAGTATAAACACGACCTACTTTGAAAATGAGCCGGCCTGCACGGTCTAGGCCGCTGCGGGCCGACCGGCTCAAAAGTAGGTCATGATTATACTCATTTTGACGGGAATTTTATGGTGAATCTGAATTTYTTATTTTCAAAAGTTCAAATCTTTCCAGAGAAAAGTTTCAGACAATTTTTCGAAAATTCCCTAGATTTTTTTTGTGGAATTTGACCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31972</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>277797</contig_pos>
        <strand>+</strand>
        <context>CAAAAGTTCA[A/G]ATCTTTCCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGACGGGAATTTTATGGTGAATCTGAATTTTTTATTTTCAAAAGTTCA</left_flank>
        <right_flank>ATCTTTCCAGAGAAAAGTTTCAGACAATTTTTCGAAAATTCCCTAGATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACAATTTTCTTATATTTCTCCTGGGAATTTCGTACCTAGAAATTTCTTTATGGAAAACAGTCTGATACGAAAAATGTTTTTTATTATGTTATATTTTTTTGGAAATCAGAGAACCGAACAAAAAAACACTTCCAGATCTGGAATTTTGTCTGAAATTTCAGTTGTTTTTTTTGAAATAGTGAAATTAAAGTTCGGCTTGTTGAGAGCTTCAAAATGAGTATAAACATGGCAAATTTTCAAAAACATTTTTTTTTTGAAAATTTCGGGATTTCGAAATTTTTCATTCCAAATGTTTATGCTAGAACGATGGAACTTGAATTTTCGACATCAGCAAAAAACTCCCGTCAAAATGAGTATAAACACGACCTACTTTGAAAATGAGCCGGCCTGCACGGTCTAGGCCGCTGCGGGCCGACCGGCTCAAAAGTAGGTCATGATTATACTCATTTTGACGGGAATTTTATGGTGAATCTGAATTTTTTATTTTCAAAAGTTCAAATCTTTCCAGAGAAAAGTTTCAGACAATTTTTCGAAAATTCCCTAGATTTTTTTTGTGGAATTTGACCTTTCTTAGACAAGAATTTTGAGATTGAAGAGAGTTTAAAAATCTGGAAAGTGGTTCAAAAACGTGAAAAACCCAGAAAATCATCATAAATTCAAAGGTCAAAGATAACTTCCTGCCACGTTGAAAAGTTTTGAAATTAAAAATTATGATTTTTCTTTTTTTCAAATTCATTACTTTCGCGCCCTAAATCTTAAATCCCAAAAAACGCTCTATCAAAAAATGGTTTCGTGGAGCCAGTTTCCACCTGAAATAAAGCGAAAAATCGCTGAAAATTATGATTTCATGAGCAGGTAATTAAGTGATAATTAGTCCCCTAATTACCCTAATTAAATCTAGGATTTCAATGAGAAATGCATGCCATGTGGATCGTCAAATTGTGGATTCAACGAAATTTCGAATTCCACGTGTCAGATTTGGGTACAAACAAGACAAA</canonical>
            <polymorphic>AAACAATTTTCTTATATTTCTCCTGGGAATTTCGTACCTAGAAATTTCTTTATGGAAAACAGTCTGATACGAAAAATGTTTTTTATTATGTTATATTTTTTTGGAAATCAGAGAACCGAACAAAAAAACACTTCCAGATCTGGAATTTTGTCTGAAATTTCAGTTGTTTTTTTTGAAATAGTGAAATTAAAGTTCGGCTTGTTGAGAGCTTCAAAATGAGTATAAACATGGCAAATTTTCAAAAACATTTTTTTTTTGAAAATTTCGGGATTTCGAAATTTTTCATTCCAAATGTTTATGCTAGAACGATGGAACTTGAATTTTCGACATCAGCAAAAAACTCCCGTCAAAATGAGTATAAACACGACCTACTTTGAAAATGAGCCGGCCTGCACGGTCTAGGCCGCTGCGGGCCGACCGGCTCAAAAGTAGGTCATGATTATACTCATTTTGACGGGAATTTTATGGTGAATCTGAATTTTTTATTTTCAAAAGTTCARATCTTTCCAGAGAAAAGTTTCAGACAATTTTTCGAAAATTCCCTAGATTTTTTTTGTGGAATTTGACCTTTCTTAGACAAGAATTTTGAGATTGAAGAGAGTTTAAAAATCTGGAAAGTGGTTCAAAAACGTGAAAAACCCAGAAAATCATCATAAATTCAAAGGTCAAAGATAACTTCCTGCCACGTTGAAAAGTTTTGAAATTAAAAATTATGATTTTTCTTTTTTTCAAATTCATTACTTTCGCGCCCTAAATCTTAAATCCCAAAAAACGCTCTATCAAAAAATGGTTTCGTGGAGCCAGTTTCCACCTGAAATAAAGCGAAAAATCGCTGAAAATTATGATTTCATGAGCAGGTAATTAAGTGATAATTAGTCCCCTAATTACCCTAATTAAATCTAGGATTTCAATGAGAAATGCATGCCATGTGGATCGTCAAATTGTGGATTCAACGAAATTTCGAATTCCACGTGTCAGATTTGGGTACAAACAAGACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAGAGAACCGAACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGGTCAAATTCCACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>465</pcr_amplicon_size>
		<canonical_amplicon>ATCAGAGAACCGAACAAAAAAACACTTCCAGATCTGGAATTTTGTCTGAAATTTCAGTTGTTTTTTTTGAAATAGTGAAATTAAAGTTCGGCTTGTTGAGAGCTTCAAAATGAGTATAAACATGGCAAATTTTCAAAAACATTTTTTTTTTGAAAATTTCGGGATTTCGAAATTTTTCATTCCAAATGTTTATGCTAGAACGATGGAACTTGAATTTTCGACATCAGCAAAAAACTCCCGTCAAAATGAGTATAAACACGACCTACTTTGAAAATGAGCCGGCCTGCACGGTCTAGGCCGCTGCGGGCCGACCGGCTCAAAAGTAGGTCATGATTATACTCATTTTGACGGGAATTTTATGGTGAATCTGAATTTTTTATTTTCAAAAGTTCAAATCTTTCCAGAGAAAAGTTTCAGACAATTTTTCGAAAATTCCCTAGATTTTTTTTGTGGAATTTGACCTTT</canonical_amplicon>
		<polymorphic_amplicon>ATCAGAGAACCGAACAAAAAAACACTTCCAGATCTGGAATTTTGTCTGAAATTTCAGTTGTTTTTTTTGAAATAGTGAAATTAAAGTTCGGCTTGTTGAGAGCTTCAAAATGAGTATAAACATGGCAAATTTTCAAAAACATTTTTTTTTTGAAAATTTCGGGATTTCGAAATTTTTCATTCCAAATGTTTATGCTAGAACGATGGAACTTGAATTTTCGACATCAGCAAAAAACTCCCGTCAAAATGAGTATAAACACGACCTACTTTGAAAATGAGCCGGCCTGCACGGTCTAGGCCGCTGCGGGCCGACCGGCTCAAAAGTAGGTCATGATTATACTCATTTTGACGGGAATTTTATGGTGAATCTGAATTTTTTATTTTCAAAAGTTCARATCTTTCCAGAGAAAAGTTTCAGACAATTTTTCGAAAATTCCCTAGATTTTTTTTGTGGAATTTGACCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31973</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>319847</contig_pos>
        <strand>+</strand>
        <context>ttgggGGATC[C/T]CSAACTTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATC</left_flank>
        <right_flank>CGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATAGAAGTGTTGAGTGATCGGGTATACAGCAGTCTGGGAACAAAAATCACTTTAACTTTCAGCACATCTATTTTGGTTACTGTAGAATATATAAAAAAGTAGTCAACTGATAAAATGTTCACCATAAAGTTAGAAACCTTTTGTCAGTTGACTACCTTTCGATATCTCTCACAGTAACCCGAGATATAAGTGCGCAAAGTTGAAAGATCACCTCTCTATCCCGTTCTCTATTCGATCGGAATACACTAATATATACTGGCAATATGACAACGGGCAATATCAGTAATCCCAAGTAAATTAGCCCGAAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAGATAGAAAAGTGCTTTGACGCATTTTTAGTGCCTTGACGCATTTTCAGCGCCTTGGCGCCTTTTAGTGTATTGACGCCTTTTAGTGTATTGGCGCTTTTTCAGTACTTTGACGCATTTCTAGTGCCTCAGAAAATTGGTATTTT</canonical>
            <polymorphic>CGATAGAAGTGTTGAGTGATCGGGTATACAGCAGTCTGGGAACAAAAATCACTTTAACTTTCAGCACATCTATTTTGGTTACTGTAGAATATATAAAAAAGTAGTCAACTGATAAAATGTTCACCATAAAGTTAGAAACCTTTTGTCAGTTGACTACCTTTCGATATCTCTCACAGTAACCCGAGATATAAGTGCGCAAAGTTGAAAGATCACCTCTCTATCCCGTTCTCTATTCGATCGGAATACACTAATATATACTGGCAATATGACAACGGGCAATATCAGTAATCCCAAGTAAATTAGCCCGAAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCYCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAGATAGAAAAGTGCTTTGACGCATTTTTAGTGCCTTGACGCATTTTCAGCGCCTTGGCGCCTTTTAGTGTATTGACGCCTTTTAGTGTATTGGCGCTTTTTCAGTACTTTGACGCATTTCTAGTGCCTCAGAAAATTGGTATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 321 177 2</canonical_bands>
                <polymorphic_bands>821 177 2</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGCGA</site>
                <isoschizomers>
                    <enzyme>Bsp68I</enzyme>
                    <enzyme>NruI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTAGAGGAAAAAGAATGAC</pcr_primer_p1>
		<pcr_primer_p2>ATTCCCAAATAACTTTGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAAT</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCYCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31974</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>319849</contig_pos>
        <strand>+</strand>
        <context>gggGGATCYC[C/G]AACTTTTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGC</left_flank>
        <right_flank>AACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGAAGTGTTGAGTGATCGGGTATACAGCAGTCTGGGAACAAAAATCACTTTAACTTTCAGCACATCTATTTTGGTTACTGTAGAATATATAAAAAAGTAGTCAACTGATAAAATGTTCACCATAAAGTTAGAAACCTTTTGTCAGTTGACTACCTTTCGATATCTCTCACAGTAACCCGAGATATAAGTGCGCAAAGTTGAAAGATCACCTCTCTATCCCGTTCTCTATTCGATCGGAATACACTAATATATACTGGCAATATGACAACGGGCAATATCAGTAATCCCAAGTAAATTAGCCCGAAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAGATAGAAAAGTGCTTTGACGCATTTTTAGTGCCTTGACGCATTTTCAGCGCCTTGGCGCCTTTTAGTGTATTGACGCCTTTTAGTGTATTGGCGCTTTTTCAGTACTTTGACGCATTTCTAGTGCCTCAGAAAATTGGTATTTTCA</canonical>
            <polymorphic>ATAGAAGTGTTGAGTGATCGGGTATACAGCAGTCTGGGAACAAAAATCACTTTAACTTTCAGCACATCTATTTTGGTTACTGTAGAATATATAAAAAAGTAGTCAACTGATAAAATGTTCACCATAAAGTTAGAAACCTTTTGTCAGTTGACTACCTTTCGATATCTCTCACAGTAACCCGAGATATAAGTGCGCAAAGTTGAAAGATCACCTCTCTATCCCGTTCTCTATTCGATCGGAATACACTAATATATACTGGCAATATGACAACGGGCAATATCAGTAATCCCAAGTAAATTAGCCCGAAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCSAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAGATAGAAAAGTGCTTTGACGCATTTTTAGTGCCTTGACGCATTTTCAGCGCCTTGGCGCCTTTTAGTGTATTGACGCCTTTTAGTGTATTGGCGCTTTTTCAGTACTTTGACGCATTTCTAGTGCCTCAGAAAATTGGTATTTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>498 321 179 2</canonical_bands>
                <polymorphic_bands>819 179 2</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGCGA</site>
                <isoschizomers>
                    <enzyme>Bsp68I</enzyme>
                    <enzyme>NruI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>431 244 148 111 66</canonical_bands>
                <polymorphic_bands>431 244 177 148</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTAGAGGAAAAAGAATGAC</pcr_primer_p1>
		<pcr_primer_p2>ATTCCCAAATAACTTTGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAAT</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCSAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31975</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>320133</contig_pos>
        <strand></strand>
        <context>gcagagaaaa[C/A]aaacgctcta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAA</left_flank>
        <right_flank>AAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCCCAAGTAAATTAGCCCGAAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAGATAGAAAAGTGCTTTGACGCATTTTTAGTGCCTTGACGCATTTTCAGCGCCTTGGCGCCTTTTAGTGTATTGACGCCTTTTAGTGTATTGGCGCTTTTTCAGTACTTTGACGCATTTCTAGTGCCTCAGAAAATTGGTATTTTCAATATTTTTTCTCAAAAATTTGTCATCTGAAAATGTCAAAAAAAGTGATGTTGAGAAAATTTTTGTATCCTATAATTTTAAGTTTTTCGGGTGCAAATAACGTAAAAATAAAATTTGTCATAAAATTTTTTTCCAAACTCCCATGATTTCTTCAATTTACGACTATGTAGATTCGAATAAAGAGCTAGAAAATGTCCAAAATTTCTGGTCCCTTTCAGATCATTTCAATTTTTTCCTCGAAACTTCTACAATAATTTTTAACCTAATCCATTTATCAATTTTGCT</canonical>
            <polymorphic>AATCCCAAGTAAATTAGCCCGAAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAAMAAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAGATAGAAAAGTGCTTTGACGCATTTTTAGTGCCTTGACGCATTTTCAGCGCCTTGGCGCCTTTTAGTGTATTGACGCCTTTTAGTGTATTGGCGCTTTTTCAGTACTTTGACGCATTTCTAGTGCCTCAGAAAATTGGTATTTTCAATATTTTTTCTCAAAAATTTGTCATCTGAAAATGTCAAAAAAAGTGATGTTGAGAAAATTTTTGTATCCTATAATTTTAAGTTTTTCGGGTGCAAATAACGTAAAAATAAAATTTGTCATAAAATTTTTTTCCAAACTCCCATGATTTCTTCAATTTACGACTATGTAGATTCGAATAAAGAGCTAGAAAATGTCCAAAATTTCTGGTCCCTTTCAGATCATTTCAATTTTTTCCTCGAAACTTCTACAATAATTTTTAACCTAATCCATTTATCAATTTTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGGAGAGGAACAAAACATAC</pcr_primer_p1>
		<pcr_primer_p2>ATACACTAAAAGGCGTCAATACA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAGATAGAAAAGTGCTTTGACGCATTTTTAGTGCCTTGACGCATTTTCAGCGCCTTGGCGCCTTTTAGTGTATTGACGCCTTTTAGTGTAT</canonical_amplicon>
		<polymorphic_amplicon>ACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAAMAAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAGATAGAAAAGTGCTTTGACGCATTTTTAGTGCCTTGACGCATTTTCAGCGCCTTGGCGCCTTTTAGTGTATTGACGCCTTTTAGTGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31976</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>320154</contig_pos>
        <strand></strand>
        <context>gctgtcggcg[T/C]ctctacaaca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCG</left_flank>
        <right_flank>CTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAGATAGAAAAGTGCTTTGACGCATTTTTAGTGCCTTGACGCATTTTCAGCGCCTTGGCGCCTTTTAGTGTATTGACGCCTTTTAGTGTATTGGCGCTTTTTCAGTACTTTGACGCATTTCTAGTGCCTCAGAAAATTGGTATTTTCAATATTTTTTCTCAAAAATTTGTCATCTGAAAATGTCAAAAAAAGTGATGTTGAGAAAATTTTTGTATCCTATAATTTTAAGTTTTTCGGGTGCAAATAACGTAAAAATAAAATTTGTCATAAAATTTTTTTCCAAACTCCCATGATTTCTTCAATTTACGACTATGTAGATTCGAATAAAGAGCTAGAAAATGTCCAAAATTTCTGGTCCCTTTCAGATCATTTCAATTTTTTCCTCGAAACTTCTACAATAATTTTTAACCTAATCCATTTATCAATTTTGCTCCAAAAAGAGCTCAGAAAGTT</canonical>
            <polymorphic>AAAATTAGAGGAAAAAGAATGACATGTAATGGAGTAGTTTCAGTTAGAAGACACACAAAATGCGCCAAAACTTTGTTCATTTTGAAGGTAGATAATCGAAAATTATGAGACCGGAATCAACAAGTCGAGAAGTTCAAAATGAGTCTAAATTTGACTAGGTTTACTCAACTGGCAGATGAAGTTTGGGGGATCGCGAACTTTTTTTCATCACGGCAACTAGAAACATCAAAAGCAAAGTTATTTGGGAATTTTTGATAGGAAAGTGTGATTCCGAAATTCCGCCATTTTGAACACCCTGGCGTCACGACACTGGTAACTAGTCAAGGAACGGAAAGTGCGCCAAGGCCCCAAAATTGCGCCAACACGCAAAAGTGTGTGCCAAGACACGGAAAACACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCGYCTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAGATAGAAAAGTGCTTTGACGCATTTTTAGTGCCTTGACGCATTTTCAGCGCCTTGGCGCCTTTTAGTGTATTGACGCCTTTTAGTGTATTGGCGCTTTTTCAGTACTTTGACGCATTTCTAGTGCCTCAGAAAATTGGTATTTTCAATATTTTTTCTCAAAAATTTGTCATCTGAAAATGTCAAAAAAAGTGATGTTGAGAAAATTTTTGTATCCTATAATTTTAAGTTTTTCGGGTGCAAATAACGTAAAAATAAAATTTGTCATAAAATTTTTTTCCAAACTCCCATGATTTCTTCAATTTACGACTATGTAGATTCGAATAAAGAGCTAGAAAATGTCCAAAATTTCTGGTCCCTTTCAGATCATTTCAATTTTTTCCTCGAAACTTCTACAATAATTTTTAACCTAATCCATTTATCAATTTTGCTCCAAAAAGAGCTCAGAAAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>377 299 198 108 18</canonical_bands>
                <polymorphic_bands>377 306 299 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGGAGAGGAACAAAACATAC</pcr_primer_p1>
		<pcr_primer_p2>ATACACTAAAAGGCGTCAATACA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCGTCTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAGATAGAAAAGTGCTTTGACGCATTTTTAGTGCCTTGACGCATTTTCAGCGCCTTGGCGCCTTTTAGTGTATTGACGCCTTTTAGTGTAT</canonical_amplicon>
		<polymorphic_amplicon>ACGGAGAGGAACAAAACATACGTGGAAGCAAAAAACGTAAAAGCAAGACCGCAAAAAATAAACTGCGAAGAGACGCAGAGAAAACAAACGCTCTAGCTGTCGGCGYCTCTACAACAAGCGCGCGTAAAACTGTTCATAACTTTGTTCATTTTCTAGATAGAAAAGTGCTTTGACGCATTTTTAGTGCCTTGACGCATTTTCAGCGCCTTGGCGCCTTTTAGTGTATTGACGCCTTTTAGTGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31977</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>328932</contig_pos>
        <strand>+</strand>
        <context>ATTAAAATTC[A/G]TTCGAAAYCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACACTTTTGATGCCAGGGACCAATGGCCAGACTGCAAATCATTAAAATTC</left_flank>
        <right_flank>TTCGAAACCAAGCCTCGTGTGGATCCTGCTGGGCATTTGGAGCAGCTGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAATTTTTTTTTGAATATTTCAATTTCCAATTATAAACTTGGAAATTGAAATATTAAAAAAATGTAAGTTTCCAAAATTTCCAGACCCTCCTTCTTCTGTTCCACACTTCCAATGCCTTCGTGGTCCAAGAAAACCACCCTCCTCCTTCTTTCCCAAGGCCCCACTACACTGGAAAAGCCCTCGTCGCCCATATAAACAGCATGCAAACTTCTTGGATAGCCGAACACAATGATATTTCTGAGGACGAGATGAAATTCAAAGTAATGGATCAACGATTTGCGGATCCTTTGGAAGAAGAGGTTCAAGATGAGGGTTTGGTCCGTGGAGAAGTGGTCCCAGAACCCTTACCAGACACTTTTGATGCCAGGGACCAATGGCCAGACTGCAAATCATTAAAATTCATTCGAAACCAAGCCTCGTGTGGATCCTGCTGGGCATTTGGAGCAGCTGAAGTGATATCTGACCGTGTTTGTATTCAATCGAATGGAACTCAACAGCCCATAATCTCAGCAGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGGTAAGAAAGCCCATTTCTAAATTTTAGAAAACTAGTCGTGTTTATATTCATTCCAATTGTCTTGACCTGCTGAATGTGAACATATAATTGCTATCCATCTATCCTAAAAATGAGTGAGCAAAGTTATAGACACTCTGCGC</canonical>
            <polymorphic>AGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAATTTTTTTTTGAATATTTCAATTTCCAATTATAAACTTGGAAATTGAAATATTAAAAAAATGTAAGTTTCCAAAATTTCCAGACCCTCCTTCTTCTGTTCCACACTTCCAATGCCTTCGTGGTCCAAGAAAACCACCCTCCTCCTTCTTTCCCAAGGCCCCACTACACTGGAAAAGCCCTCGTCGCCCATATAAACAGCATGCAAACTTCTTGGATAGCCGAACACAATGATATTTCTGAGGACGAGATGAAATTCAAAGTAATGGATCAACGATTTGCGGATCCTTTGGAAGAAGAGGTTCAAGATGAGGGTTTGGTCCGTGGAGAAGTGGTCCCAGAACCCTTACCAGACACTTTTGATGCCAGGGACCAATGGCCAGACTGCAAATCATTAAAATTCRTTCGAAACCAAGCCTCGTGTGGATCCTGCTGGGCATTTGGAGCAGCTGAAGTGATATCTGACCGTGTTTGTATTCAATCGAATGGAACTCAACAGCCCATAATCTCAGCAGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGGTAAGAAAGCCCATTTCTAAATTTTAGAAAACTAGTCGTGTTTATATTCATTCCAATTGTCTTGACCTGCTGAATGTGAACATATAATTGCTATCCATCTATCCTAAAAATGAGTGAGCAAAGTTATAGACACTCTGCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACACAATGATATTTCTGAGGA</pcr_primer_p1>
		<pcr_primer_p2>AAACACGGTCAGATATCACTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAACACAATGATATTTCTGAGGACGAGATGAAATTCAAAGTAATGGATCAACGATTTGCGGATCCTTTGGAAGAAGAGGTTCAAGATGAGGGTTTGGTCCGTGGAGAAGTGGTCCCAGAACCCTTACCAGACACTTTTGATGCCAGGGACCAATGGCCAGACTGCAAATCATTAAAATTCATTCGAAACCAAGCCTCGTGTGGATCCTGCTGGGCATTTGGAGCAGCTGAAGTGATATCTGACCGTGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAACACAATGATATTTCTGAGGACGAGATGAAATTCAAAGTAATGGATCAACGATTTGCGGATCCTTTGGAAGAAGAGGTTCAAGATGAGGGTTTGGTCCGTGGAGAAGTGGTCCCAGAACCCTTACCAGACACTTTTGATGCCAGGGACCAATGGCCAGACTGCAAATCATTAAAATTCRTTCGAAACCAAGCCTCGTGTGGATCCTGCTGGGCATTTGGAGCAGCTGAAGTGATATCTGACCGTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31978</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>328940</contig_pos>
        <strand>+</strand>
        <context>TCRTTCGAAA[C/T]CAAGCCTCGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATGCCAGGGACCAATGGCCAGACTGCAAATCATTAAAATTCATTCGAAA</left_flank>
        <right_flank>CAAGCCTCGTGTGGATCCTGCTGGGCATTTGGAGCAGCTGAAGTGATATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAATTTTTTTTTGAATATTTCAATTTCCAATTATAAACTTGGAAATTGAAATATTAAAAAAATGTAAGTTTCCAAAATTTCCAGACCCTCCTTCTTCTGTTCCACACTTCCAATGCCTTCGTGGTCCAAGAAAACCACCCTCCTCCTTCTTTCCCAAGGCCCCACTACACTGGAAAAGCCCTCGTCGCCCATATAAACAGCATGCAAACTTCTTGGATAGCCGAACACAATGATATTTCTGAGGACGAGATGAAATTCAAAGTAATGGATCAACGATTTGCGGATCCTTTGGAAGAAGAGGTTCAAGATGAGGGTTTGGTCCGTGGAGAAGTGGTCCCAGAACCCTTACCAGACACTTTTGATGCCAGGGACCAATGGCCAGACTGCAAATCATTAAAATTCATTCGAAACCAAGCCTCGTGTGGATCCTGCTGGGCATTTGGAGCAGCTGAAGTGATATCTGACCGTGTTTGTATTCAATCGAATGGAACTCAACAGCCCATAATCTCAGCAGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGGTAAGAAAGCCCATTTCTAAATTTTAGAAAACTAGTCGTGTTTATATTCATTCCAATTGTCTTGACCTGCTGAATGTGAACATATAATTGCTATCCATCTATCCTAAAAATGAGTGAGCAAAGTTATAGACACTCTGCGCGCGCTCAG</canonical>
            <polymorphic>AGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAATTTTTTTTTGAATATTTCAATTTCCAATTATAAACTTGGAAATTGAAATATTAAAAAAATGTAAGTTTCCAAAATTTCCAGACCCTCCTTCTTCTGTTCCACACTTCCAATGCCTTCGTGGTCCAAGAAAACCACCCTCCTCCTTCTTTCCCAAGGCCCCACTACACTGGAAAAGCCCTCGTCGCCCATATAAACAGCATGCAAACTTCTTGGATAGCCGAACACAATGATATTTCTGAGGACGAGATGAAATTCAAAGTAATGGATCAACGATTTGCGGATCCTTTGGAAGAAGAGGTTCAAGATGAGGGTTTGGTCCGTGGAGAAGTGGTCCCAGAACCCTTACCAGACACTTTTGATGCCAGGGACCAATGGCCAGACTGCAAATCATTAAAATTCATTCGAAAYCAAGCCTCGTGTGGATCCTGCTGGGCATTTGGAGCAGCTGAAGTGATATCTGACCGTGTTTGTATTCAATCGAATGGAACTCAACAGCCCATAATCTCAGCAGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGGTAAGAAAGCCCATTTCTAAATTTTAGAAAACTAGTCGTGTTTATATTCATTCCAATTGTCTTGACCTGCTGAATGTGAACATATAATTGCTATCCATCTATCCTAAAAATGAGTGAGCAAAGTTATAGACACTCTGCGCGCGCTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>XcmI</enzyme>
                </isoschizomers>
                <canonical_bands>493 301 206</canonical_bands>
                <polymorphic_bands>794 206</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACACAATGATATTTCTGAGGA</pcr_primer_p1>
		<pcr_primer_p2>AAACACGGTCAGATATCACTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAACACAATGATATTTCTGAGGACGAGATGAAATTCAAAGTAATGGATCAACGATTTGCGGATCCTTTGGAAGAAGAGGTTCAAGATGAGGGTTTGGTCCGTGGAGAAGTGGTCCCAGAACCCTTACCAGACACTTTTGATGCCAGGGACCAATGGCCAGACTGCAAATCATTAAAATTCATTCGAAACCAAGCCTCGTGTGGATCCTGCTGGGCATTTGGAGCAGCTGAAGTGATATCTGACCGTGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAACACAATGATATTTCTGAGGACGAGATGAAATTCAAAGTAATGGATCAACGATTTGCGGATCCTTTGGAAGAAGAGGTTCAAGATGAGGGTTTGGTCCGTGGAGAAGTGGTCCCAGAACCCTTACCAGACACTTTTGATGCCAGGGACCAATGGCCAGACTGCAAATCATTAAAATTCATTCGAAAYCAAGCCTCGTGTGGATCCTGCTGGGCATTTGGAGCAGCTGAAGTGATATCTGACCGTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31979</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>329069</contig_pos>
        <strand>+</strand>
        <context>GTTGTGGGTC[C/T]ACCTGTGGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTCAACAGCCCATAATCTCAGCAGAAGATATTTTGTCCTGTTGTGGGTC</left_flank>
        <right_flank>ACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAAATTGAAATATTAAAAAAATGTAAGTTTCCAAAATTTCCAGACCCTCCTTCTTCTGTTCCACACTTCCAATGCCTTCGTGGTCCAAGAAAACCACCCTCCTCCTTCTTTCCCAAGGCCCCACTACACTGGAAAAGCCCTCGTCGCCCATATAAACAGCATGCAAACTTCTTGGATAGCCGAACACAATGATATTTCTGAGGACGAGATGAAATTCAAAGTAATGGATCAACGATTTGCGGATCCTTTGGAAGAAGAGGTTCAAGATGAGGGTTTGGTCCGTGGAGAAGTGGTCCCAGAACCCTTACCAGACACTTTTGATGCCAGGGACCAATGGCCAGACTGCAAATCATTAAAATTCATTCGAAACCAAGCCTCGTGTGGATCCTGCTGGGCATTTGGAGCAGCTGAAGTGATATCTGACCGTGTTTGTATTCAATCGAATGGAACTCAACAGCCCATAATCTCAGCAGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGGTAAGAAAGCCCATTTCTAAATTTTAGAAAACTAGTCGTGTTTATATTCATTCCAATTGTCTTGACCTGCTGAATGTGAACATATAATTGCTATCCATCTATCCTAAAAATGAGTGAGCAAAGTTATAGACACTCTGCGCGCGCTCAGAAAAAGGAAAGATGCAGACAGCTAGAGTGTCTAGCTTCTCTGCGTCTCTCTGTAGTTTTTCCTAGCCGTCTTTATATTCGTTTAAACCGTCATGGTCTTTTGAAAATAGTCACACAATTTTTATTCTTC</canonical>
            <polymorphic>GGAAATTGAAATATTAAAAAAATGTAAGTTTCCAAAATTTCCAGACCCTCCTTCTTCTGTTCCACACTTCCAATGCCTTCGTGGTCCAAGAAAACCACCCTCCTCCTTCTTTCCCAAGGCCCCACTACACTGGAAAAGCCCTCGTCGCCCATATAAACAGCATGCAAACTTCTTGGATAGCCGAACACAATGATATTTCTGAGGACGAGATGAAATTCAAAGTAATGGATCAACGATTTGCGGATCCTTTGGAAGAAGAGGTTCAAGATGAGGGTTTGGTCCGTGGAGAAGTGGTCCCAGAACCCTTACCAGACACTTTTGATGCCAGGGACCAATGGCCAGACTGCAAATCATTAAAATTCATTCGAAACCAAGCCTCGTGTGGATCCTGCTGGGCATTTGGAGCAGCTGAAGTGATATCTGACCGTGTTTGTATTCAATCGAATGGAACTCAACAGCCCATAATCTCAGCAGAAGATATTTTGTCCTGTTGTGGGTCYACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGGTAAGAAAGCCCATTTCTAAATTTTAGAAAACTAGTCGTGTTTATATTCATTCCAATTGTCTTGACCTGCTGAATGTGAACATATAATTGCTATCCATCTATCCTAAAAATGAGTGAGCAAAGTTATAGACACTCTGCGCGCGCTCAGAAAAAGGAAAGATGCAGACAGCTAGAGTGTCTAGCTTCTCTGCGTCTCTCTGTAGTTTTTCCTAGCCGTCTTTATATTCGTTTAAACCGTCATGGTCTTTTGAAAATAGTCACACAATTTTTATTCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGACTGCAAATCATTAAAATTC</pcr_primer_p1>
		<pcr_primer_p2>ATAGTCTCCTCCAGTAACCACTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGACTGCAAATCATTAAAATTCATTCGAAACCAAGCCTCGTGTGGATCCTGCTGGGCATTTGGAGCAGCTGAAGTGATATCTGACCGTGTTTGTATTCAATCGAATGGAACTCAACAGCCCATAATCTCAGCAGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAATTCTGGAGTGGTTACTGGAGGAGACTAT</canonical_amplicon>
		<polymorphic_amplicon>CAGACTGCAAATCATTAAAATTCATTCGAAACCAAGCCTCGTGTGGATCCTGCTGGGCATTTGGAGCAGCTGAAGTGATATCTGACCGTGTTTGTATTCAATCGAATGGAACTCAACAGCCCATAATCTCAGCAGAAGATATTTTGTCCTGTTGTGGGTCYACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAATTCTGGAGTGGTTACTGGAGGAGACTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31980</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>329119</contig_pos>
        <strand>+</strand>
        <context>GCAATGAAGT[A/T]CTGGAWRAAY</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGT</left_flank>
        <right_flank>CTGGATGAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCTTCTGTTCCACACTTCCAATGCCTTCGTGGTCCAAGAAAACCACCCTCCTCCTTCTTTCCCAAGGCCCCACTACACTGGAAAAGCCCTCGTCGCCCATATAAACAGCATGCAAACTTCTTGGATAGCCGAACACAATGATATTTCTGAGGACGAGATGAAATTCAAAGTAATGGATCAACGATTTGCGGATCCTTTGGAAGAAGAGGTTCAAGATGAGGGTTTGGTCCGTGGAGAAGTGGTCCCAGAACCCTTACCAGACACTTTTGATGCCAGGGACCAATGGCCAGACTGCAAATCATTAAAATTCATTCGAAACCAAGCCTCGTGTGGATCCTGCTGGGCATTTGGAGCAGCTGAAGTGATATCTGACCGTGTTTGTATTCAATCGAATGGAACTCAACAGCCCATAATCTCAGCAGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGGTAAGAAAGCCCATTTCTAAATTTTAGAAAACTAGTCGTGTTTATATTCATTCCAATTGTCTTGACCTGCTGAATGTGAACATATAATTGCTATCCATCTATCCTAAAAATGAGTGAGCAAAGTTATAGACACTCTGCGCGCGCTCAGAAAAAGGAAAGATGCAGACAGCTAGAGTGTCTAGCTTCTCTGCGTCTCTCTGTAGTTTTTCCTAGCCGTCTTTATATTCGTTTAAACCGTCATGGTCTTTTGAAAATAGTCACACAATTTTTATTCTTCTACCTTCAAAATGAGCAAAGTTACACGCTCTTCTGTGCGCGCTCTGTGAA</canonical>
            <polymorphic>CTTCTTCTGTTCCACACTTCCAATGCCTTCGTGGTCCAAGAAAACCACCCTCCTCCTTCTTTCCCAAGGCCCCACTACACTGGAAAAGCCCTCGTCGCCCATATAAACAGCATGCAAACTTCTTGGATAGCCGAACACAATGATATTTCTGAGGACGAGATGAAATTCAAAGTAATGGATCAACGATTTGCGGATCCTTTGGAAGAAGAGGTTCAAGATGAGGGTTTGGTCCGTGGAGAAGTGGTCCCAGAACCCTTACCAGACACTTTTGATGCCAGGGACCAATGGCCAGACTGCAAATCATTAAAATTCATTCGAAACCAAGCCTCGTGTGGATCCTGCTGGGCATTTGGAGCAGCTGAAGTGATATCTGACCGTGTTTGTATTCAATCGAATGGAACTCAACAGCCCATAATCTCAGCAGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTWCTGGATGAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGGTAAGAAAGCCCATTTCTAAATTTTAGAAAACTAGTCGTGTTTATATTCATTCCAATTGTCTTGACCTGCTGAATGTGAACATATAATTGCTATCCATCTATCCTAAAAATGAGTGAGCAAAGTTATAGACACTCTGCGCGCGCTCAGAAAAAGGAAAGATGCAGACAGCTAGAGTGTCTAGCTTCTCTGCGTCTCTCTGTAGTTTTTCCTAGCCGTCTTTATATTCGTTTAAACCGTCATGGTCTTTTGAAAATAGTCACACAATTTTTATTCTTCTACCTTCAAAATGAGCAAAGTTACACGCTCTTCTGTGCGCGCTCTGTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGTACT</site>
                <isoschizomers>
                    <enzyme>Acc113I</enzyme>
                    <enzyme>ScaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAGATATTTTGTCCTGTTGTG</pcr_primer_p1>
		<pcr_primer_p2>CCAAAATGCTTATCGTTCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGG</canonical_amplicon>
		<polymorphic_amplicon>AGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTWCTGGATGAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31981</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>329125</contig_pos>
        <strand>+</strand>
        <context>AAGTWCTGGA[A/T]RAAYYMTGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGA</left_flank>
        <right_flank>GAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTTCCACACTTCCAATGCCTTCGTGGTCCAAGAAAACCACCCTCCTCCTTCTTTCCCAAGGCCCCACTACACTGGAAAAGCCCTCGTCGCCCATATAAACAGCATGCAAACTTCTTGGATAGCCGAACACAATGATATTTCTGAGGACGAGATGAAATTCAAAGTAATGGATCAACGATTTGCGGATCCTTTGGAAGAAGAGGTTCAAGATGAGGGTTTGGTCCGTGGAGAAGTGGTCCCAGAACCCTTACCAGACACTTTTGATGCCAGGGACCAATGGCCAGACTGCAAATCATTAAAATTCATTCGAAACCAAGCCTCGTGTGGATCCTGCTGGGCATTTGGAGCAGCTGAAGTGATATCTGACCGTGTTTGTATTCAATCGAATGGAACTCAACAGCCCATAATCTCAGCAGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGGTAAGAAAGCCCATTTCTAAATTTTAGAAAACTAGTCGTGTTTATATTCATTCCAATTGTCTTGACCTGCTGAATGTGAACATATAATTGCTATCCATCTATCCTAAAAATGAGTGAGCAAAGTTATAGACACTCTGCGCGCGCTCAGAAAAAGGAAAGATGCAGACAGCTAGAGTGTCTAGCTTCTCTGCGTCTCTCTGTAGTTTTTCCTAGCCGTCTTTATATTCGTTTAAACCGTCATGGTCTTTTGAAAATAGTCACACAATTTTTATTCTTCTACCTTCAAAATGAGCAAAGTTACACGCTCTTCTGTGCGCGCTCTGTGAAAGAAAA</canonical>
            <polymorphic>CTGTTCCACACTTCCAATGCCTTCGTGGTCCAAGAAAACCACCCTCCTCCTTCTTTCCCAAGGCCCCACTACACTGGAAAAGCCCTCGTCGCCCATATAAACAGCATGCAAACTTCTTGGATAGCCGAACACAATGATATTTCTGAGGACGAGATGAAATTCAAAGTAATGGATCAACGATTTGCGGATCCTTTGGAAGAAGAGGTTCAAGATGAGGGTTTGGTCCGTGGAGAAGTGGTCCCAGAACCCTTACCAGACACTTTTGATGCCAGGGACCAATGGCCAGACTGCAAATCATTAAAATTCATTCGAAACCAAGCCTCGTGTGGATCCTGCTGGGCATTTGGAGCAGCTGAAGTGATATCTGACCGTGTTTGTATTCAATCGAATGGAACTCAACAGCCCATAATCTCAGCAGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGAWGAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGGTAAGAAAGCCCATTTCTAAATTTTAGAAAACTAGTCGTGTTTATATTCATTCCAATTGTCTTGACCTGCTGAATGTGAACATATAATTGCTATCCATCTATCCTAAAAATGAGTGAGCAAAGTTATAGACACTCTGCGCGCGCTCAGAAAAAGGAAAGATGCAGACAGCTAGAGTGTCTAGCTTCTCTGCGTCTCTCTGTAGTTTTTCCTAGCCGTCTTTATATTCGTTTAAACCGTCATGGTCTTTTGAAAATAGTCACACAATTTTTATTCTTCTACCTTCAAAATGAGCAAAGTTACACGCTCTTCTGTGCGCGCTCTGTGAAAGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGATATTTTGTCCTGTTGTG</pcr_primer_p1>
		<pcr_primer_p2>CCAAAATGCTTATCGTTCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGG</canonical_amplicon>
		<polymorphic_amplicon>AGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGAWGAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31982</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>329126</contig_pos>
        <strand>+</strand>
        <context>AGTWCTGGAW[A/G]AAYYMTGGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGAT</left_flank>
        <right_flank>AATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTCCACACTTCCAATGCCTTCGTGGTCCAAGAAAACCACCCTCCTCCTTCTTTCCCAAGGCCCCACTACACTGGAAAAGCCCTCGTCGCCCATATAAACAGCATGCAAACTTCTTGGATAGCCGAACACAATGATATTTCTGAGGACGAGATGAAATTCAAAGTAATGGATCAACGATTTGCGGATCCTTTGGAAGAAGAGGTTCAAGATGAGGGTTTGGTCCGTGGAGAAGTGGTCCCAGAACCCTTACCAGACACTTTTGATGCCAGGGACCAATGGCCAGACTGCAAATCATTAAAATTCATTCGAAACCAAGCCTCGTGTGGATCCTGCTGGGCATTTGGAGCAGCTGAAGTGATATCTGACCGTGTTTGTATTCAATCGAATGGAACTCAACAGCCCATAATCTCAGCAGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGGTAAGAAAGCCCATTTCTAAATTTTAGAAAACTAGTCGTGTTTATATTCATTCCAATTGTCTTGACCTGCTGAATGTGAACATATAATTGCTATCCATCTATCCTAAAAATGAGTGAGCAAAGTTATAGACACTCTGCGCGCGCTCAGAAAAAGGAAAGATGCAGACAGCTAGAGTGTCTAGCTTCTCTGCGTCTCTCTGTAGTTTTTCCTAGCCGTCTTTATATTCGTTTAAACCGTCATGGTCTTTTGAAAATAGTCACACAATTTTTATTCTTCTACCTTCAAAATGAGCAAAGTTACACGCTCTTCTGTGCGCGCTCTGTGAAAGAAAAG</canonical>
            <polymorphic>TGTTCCACACTTCCAATGCCTTCGTGGTCCAAGAAAACCACCCTCCTCCTTCTTTCCCAAGGCCCCACTACACTGGAAAAGCCCTCGTCGCCCATATAAACAGCATGCAAACTTCTTGGATAGCCGAACACAATGATATTTCTGAGGACGAGATGAAATTCAAAGTAATGGATCAACGATTTGCGGATCCTTTGGAAGAAGAGGTTCAAGATGAGGGTTTGGTCCGTGGAGAAGTGGTCCCAGAACCCTTACCAGACACTTTTGATGCCAGGGACCAATGGCCAGACTGCAAATCATTAAAATTCATTCGAAACCAAGCCTCGTGTGGATCCTGCTGGGCATTTGGAGCAGCTGAAGTGATATCTGACCGTGTTTGTATTCAATCGAATGGAACTCAACAGCCCATAATCTCAGCAGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATRAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGGTAAGAAAGCCCATTTCTAAATTTTAGAAAACTAGTCGTGTTTATATTCATTCCAATTGTCTTGACCTGCTGAATGTGAACATATAATTGCTATCCATCTATCCTAAAAATGAGTGAGCAAAGTTATAGACACTCTGCGCGCGCTCAGAAAAAGGAAAGATGCAGACAGCTAGAGTGTCTAGCTTCTCTGCGTCTCTCTGTAGTTTTTCCTAGCCGTCTTTATATTCGTTTAAACCGTCATGGTCTTTTGAAAATAGTCACACAATTTTTATTCTTCTACCTTCAAAATGAGCAAAGTTACACGCTCTTCTGTGCGCGCTCTGTGAAAGAAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>315 200 156 144 97 88</canonical_bands>
                <polymorphic_bands>315 288 156 144 97</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>500 412 88</canonical_bands>
                <polymorphic_bands>588 412</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAGATATTTTGTCCTGTTGTG</pcr_primer_p1>
		<pcr_primer_p2>CCAAAATGCTTATCGTTCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGG</canonical_amplicon>
		<polymorphic_amplicon>AGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATRAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31983</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>329129</contig_pos>
        <strand>+</strand>
        <context>WCTGGAWRAA[C/T]YMTGGAGTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAA</left_flank>
        <right_flank>TCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCACACTTCCAATGCCTTCGTGGTCCAAGAAAACCACCCTCCTCCTTCTTTCCCAAGGCCCCACTACACTGGAAAAGCCCTCGTCGCCCATATAAACAGCATGCAAACTTCTTGGATAGCCGAACACAATGATATTTCTGAGGACGAGATGAAATTCAAAGTAATGGATCAACGATTTGCGGATCCTTTGGAAGAAGAGGTTCAAGATGAGGGTTTGGTCCGTGGAGAAGTGGTCCCAGAACCCTTACCAGACACTTTTGATGCCAGGGACCAATGGCCAGACTGCAAATCATTAAAATTCATTCGAAACCAAGCCTCGTGTGGATCCTGCTGGGCATTTGGAGCAGCTGAAGTGATATCTGACCGTGTTTGTATTCAATCGAATGGAACTCAACAGCCCATAATCTCAGCAGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGGTAAGAAAGCCCATTTCTAAATTTTAGAAAACTAGTCGTGTTTATATTCATTCCAATTGTCTTGACCTGCTGAATGTGAACATATAATTGCTATCCATCTATCCTAAAAATGAGTGAGCAAAGTTATAGACACTCTGCGCGCGCTCAGAAAAAGGAAAGATGCAGACAGCTAGAGTGTCTAGCTTCTCTGCGTCTCTCTGTAGTTTTTCCTAGCCGTCTTTATATTCGTTTAAACCGTCATGGTCTTTTGAAAATAGTCACACAATTTTTATTCTTCTACCTTCAAAATGAGCAAAGTTACACGCTCTTCTGTGCGCGCTCTGTGAAAGAAAAGACG</canonical>
            <polymorphic>TCCACACTTCCAATGCCTTCGTGGTCCAAGAAAACCACCCTCCTCCTTCTTTCCCAAGGCCCCACTACACTGGAAAAGCCCTCGTCGCCCATATAAACAGCATGCAAACTTCTTGGATAGCCGAACACAATGATATTTCTGAGGACGAGATGAAATTCAAAGTAATGGATCAACGATTTGCGGATCCTTTGGAAGAAGAGGTTCAAGATGAGGGTTTGGTCCGTGGAGAAGTGGTCCCAGAACCCTTACCAGACACTTTTGATGCCAGGGACCAATGGCCAGACTGCAAATCATTAAAATTCATTCGAAACCAAGCCTCGTGTGGATCCTGCTGGGCATTTGGAGCAGCTGAAGTGATATCTGACCGTGTTTGTATTCAATCGAATGGAACTCAACAGCCCATAATCTCAGCAGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAAYTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGGTAAGAAAGCCCATTTCTAAATTTTAGAAAACTAGTCGTGTTTATATTCATTCCAATTGTCTTGACCTGCTGAATGTGAACATATAATTGCTATCCATCTATCCTAAAAATGAGTGAGCAAAGTTATAGACACTCTGCGCGCGCTCAGAAAAAGGAAAGATGCAGACAGCTAGAGTGTCTAGCTTCTCTGCGTCTCTCTGTAGTTTTTCCTAGCCGTCTTTATATTCGTTTAAACCGTCATGGTCTTTTGAAAATAGTCACACAATTTTTATTCTTCTACCTTCAAAATGAGCAAAGTTACACGCTCTTCTGTGCGCGCTCTGTGAAAGAAAAGACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>318 200 153 144 97 88</canonical_bands>
                <polymorphic_bands>318 288 153 144 97</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>497 415 88</canonical_bands>
                <polymorphic_bands>585 415</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>178 175 153 144 97 88 74 35 31 25</canonical_bands>
                <polymorphic_bands>178 175 153 144 113 97 74 35 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAGATATTTTGTCCTGTTGTG</pcr_primer_p1>
		<pcr_primer_p2>CCAAAATGCTTATCGTTCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGG</canonical_amplicon>
		<polymorphic_amplicon>AGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAAYTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31984</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>329130</contig_pos>
        <strand>+</strand>
        <context>CTGGAWRAAY[C/T]MTGGAGTGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAAT</left_flank>
        <right_flank>CTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCACACTTCCAATGCCTTCGTGGTCCAAGAAAACCACCCTCCTCCTTCTTTCCCAAGGCCCCACTACACTGGAAAAGCCCTCGTCGCCCATATAAACAGCATGCAAACTTCTTGGATAGCCGAACACAATGATATTTCTGAGGACGAGATGAAATTCAAAGTAATGGATCAACGATTTGCGGATCCTTTGGAAGAAGAGGTTCAAGATGAGGGTTTGGTCCGTGGAGAAGTGGTCCCAGAACCCTTACCAGACACTTTTGATGCCAGGGACCAATGGCCAGACTGCAAATCATTAAAATTCATTCGAAACCAAGCCTCGTGTGGATCCTGCTGGGCATTTGGAGCAGCTGAAGTGATATCTGACCGTGTTTGTATTCAATCGAATGGAACTCAACAGCCCATAATCTCAGCAGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGGTAAGAAAGCCCATTTCTAAATTTTAGAAAACTAGTCGTGTTTATATTCATTCCAATTGTCTTGACCTGCTGAATGTGAACATATAATTGCTATCCATCTATCCTAAAAATGAGTGAGCAAAGTTATAGACACTCTGCGCGCGCTCAGAAAAAGGAAAGATGCAGACAGCTAGAGTGTCTAGCTTCTCTGCGTCTCTCTGTAGTTTTTCCTAGCCGTCTTTATATTCGTTTAAACCGTCATGGTCTTTTGAAAATAGTCACACAATTTTTATTCTTCTACCTTCAAAATGAGCAAAGTTACACGCTCTTCTGTGCGCGCTCTGTGAAAGAAAAGACGC</canonical>
            <polymorphic>CCACACTTCCAATGCCTTCGTGGTCCAAGAAAACCACCCTCCTCCTTCTTTCCCAAGGCCCCACTACACTGGAAAAGCCCTCGTCGCCCATATAAACAGCATGCAAACTTCTTGGATAGCCGAACACAATGATATTTCTGAGGACGAGATGAAATTCAAAGTAATGGATCAACGATTTGCGGATCCTTTGGAAGAAGAGGTTCAAGATGAGGGTTTGGTCCGTGGAGAAGTGGTCCCAGAACCCTTACCAGACACTTTTGATGCCAGGGACCAATGGCCAGACTGCAAATCATTAAAATTCATTCGAAACCAAGCCTCGTGTGGATCCTGCTGGGCATTTGGAGCAGCTGAAGTGATATCTGACCGTGTTTGTATTCAATCGAATGGAACTCAACAGCCCATAATCTCAGCAGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAATYCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGGTAAGAAAGCCCATTTCTAAATTTTAGAAAACTAGTCGTGTTTATATTCATTCCAATTGTCTTGACCTGCTGAATGTGAACATATAATTGCTATCCATCTATCCTAAAAATGAGTGAGCAAAGTTATAGACACTCTGCGCGCGCTCAGAAAAAGGAAAGATGCAGACAGCTAGAGTGTCTAGCTTCTCTGCGTCTCTCTGTAGTTTTTCCTAGCCGTCTTTATATTCGTTTAAACCGTCATGGTCTTTTGAAAATAGTCACACAATTTTTATTCTTCTACCTTCAAAATGAGCAAAGTTACACGCTCTTCTGTGCGCGCTCTGTGAAAGAAAAGACGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>319 200 152 144 97 88</canonical_bands>
                <polymorphic_bands>319 288 152 144 97</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>496 416 88</canonical_bands>
                <polymorphic_bands>584 416</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>298 277 203 106 88 28</canonical_bands>
                <polymorphic_bands>386 277 203 106 28</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>178 175 152 144 97 88 75 35 31 25</canonical_bands>
                <polymorphic_bands>178 175 152 144 113 97 75 35 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAGATATTTTGTCCTGTTGTG</pcr_primer_p1>
		<pcr_primer_p2>CCAAAATGCTTATCGTTCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGG</canonical_amplicon>
		<polymorphic_amplicon>AGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAATYCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31985</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>329131</contig_pos>
        <strand>+</strand>
        <context>TGGAWRAAYY[A/C]TGGAGTGGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAATT</left_flank>
        <right_flank>TGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACACTTCCAATGCCTTCGTGGTCCAAGAAAACCACCCTCCTCCTTCTTTCCCAAGGCCCCACTACACTGGAAAAGCCCTCGTCGCCCATATAAACAGCATGCAAACTTCTTGGATAGCCGAACACAATGATATTTCTGAGGACGAGATGAAATTCAAAGTAATGGATCAACGATTTGCGGATCCTTTGGAAGAAGAGGTTCAAGATGAGGGTTTGGTCCGTGGAGAAGTGGTCCCAGAACCCTTACCAGACACTTTTGATGCCAGGGACCAATGGCCAGACTGCAAATCATTAAAATTCATTCGAAACCAAGCCTCGTGTGGATCCTGCTGGGCATTTGGAGCAGCTGAAGTGATATCTGACCGTGTTTGTATTCAATCGAATGGAACTCAACAGCCCATAATCTCAGCAGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGGTAAGAAAGCCCATTTCTAAATTTTAGAAAACTAGTCGTGTTTATATTCATTCCAATTGTCTTGACCTGCTGAATGTGAACATATAATTGCTATCCATCTATCCTAAAAATGAGTGAGCAAAGTTATAGACACTCTGCGCGCGCTCAGAAAAAGGAAAGATGCAGACAGCTAGAGTGTCTAGCTTCTCTGCGTCTCTCTGTAGTTTTTCCTAGCCGTCTTTATATTCGTTTAAACCGTCATGGTCTTTTGAAAATAGTCACACAATTTTTATTCTTCTACCTTCAAAATGAGCAAAGTTACACGCTCTTCTGTGCGCGCTCTGTGAAAGAAAAGACGCA</canonical>
            <polymorphic>CACACTTCCAATGCCTTCGTGGTCCAAGAAAACCACCCTCCTCCTTCTTTCCCAAGGCCCCACTACACTGGAAAAGCCCTCGTCGCCCATATAAACAGCATGCAAACTTCTTGGATAGCCGAACACAATGATATTTCTGAGGACGAGATGAAATTCAAAGTAATGGATCAACGATTTGCGGATCCTTTGGAAGAAGAGGTTCAAGATGAGGGTTTGGTCCGTGGAGAAGTGGTCCCAGAACCCTTACCAGACACTTTTGATGCCAGGGACCAATGGCCAGACTGCAAATCATTAAAATTCATTCGAAACCAAGCCTCGTGTGGATCCTGCTGGGCATTTGGAGCAGCTGAAGTGATATCTGACCGTGTTTGTATTCAATCGAATGGAACTCAACAGCCCATAATCTCAGCAGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAATTMTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGGTAAGAAAGCCCATTTCTAAATTTTAGAAAACTAGTCGTGTTTATATTCATTCCAATTGTCTTGACCTGCTGAATGTGAACATATAATTGCTATCCATCTATCCTAAAAATGAGTGAGCAAAGTTATAGACACTCTGCGCGCGCTCAGAAAAAGGAAAGATGCAGACAGCTAGAGTGTCTAGCTTCTCTGCGTCTCTCTGTAGTTTTTCCTAGCCGTCTTTATATTCGTTTAAACCGTCATGGTCTTTTGAAAATAGTCACACAATTTTTATTCTTCTACCTTCAAAATGAGCAAAGTTACACGCTCTTCTGTGCGCGCTCTGTGAAAGAAAAGACGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>320 200 151 144 97 88</canonical_bands>
                <polymorphic_bands>320 288 151 144 97</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>495 417 88</canonical_bands>
                <polymorphic_bands>583 417</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>298 278 202 106 88 28</canonical_bands>
                <polymorphic_bands>386 278 202 106 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAGATATTTTGTCCTGTTGTG</pcr_primer_p1>
		<pcr_primer_p2>CCAAAATGCTTATCGTTCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGG</canonical_amplicon>
		<polymorphic_amplicon>AGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAATTMTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31986</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>329187</contig_pos>
        <strand>+</strand>
        <context>ATATTCATTC[C/T]CACCTTGCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTC</left_flank>
        <right_flank>CACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCCCACTACACTGGAAAAGCCCTCGTCGCCCATATAAACAGCATGCAAACTTCTTGGATAGCCGAACACAATGATATTTCTGAGGACGAGATGAAATTCAAAGTAATGGATCAACGATTTGCGGATCCTTTGGAAGAAGAGGTTCAAGATGAGGGTTTGGTCCGTGGAGAAGTGGTCCCAGAACCCTTACCAGACACTTTTGATGCCAGGGACCAATGGCCAGACTGCAAATCATTAAAATTCATTCGAAACCAAGCCTCGTGTGGATCCTGCTGGGCATTTGGAGCAGCTGAAGTGATATCTGACCGTGTTTGTATTCAATCGAATGGAACTCAACAGCCCATAATCTCAGCAGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGGTAAGAAAGCCCATTTCTAAATTTTAGAAAACTAGTCGTGTTTATATTCATTCCAATTGTCTTGACCTGCTGAATGTGAACATATAATTGCTATCCATCTATCCTAAAAATGAGTGAGCAAAGTTATAGACACTCTGCGCGCGCTCAGAAAAAGGAAAGATGCAGACAGCTAGAGTGTCTAGCTTCTCTGCGTCTCTCTGTAGTTTTTCCTAGCCGTCTTTATATTCGTTTAAACCGTCATGGTCTTTTGAAAATAGTCACACAATTTTTATTCTTCTACCTTCAAAATGAGCAAAGTTACACGCTCTTCTGTGCGCGCTCTGTGAAAGAAAAGACGCAGACAGTTAGAGAGCCTAGCTTCTATGCGTTTCTCTGCTTTCCAGTTTTTCACTTTC</canonical>
            <polymorphic>GCCCCACTACACTGGAAAAGCCCTCGTCGCCCATATAAACAGCATGCAAACTTCTTGGATAGCCGAACACAATGATATTTCTGAGGACGAGATGAAATTCAAAGTAATGGATCAACGATTTGCGGATCCTTTGGAAGAAGAGGTTCAAGATGAGGGTTTGGTCCGTGGAGAAGTGGTCCCAGAACCCTTACCAGACACTTTTGATGCCAGGGACCAATGGCCAGACTGCAAATCATTAAAATTCATTCGAAACCAAGCCTCGTGTGGATCCTGCTGGGCATTTGGAGCAGCTGAAGTGATATCTGACCGTGTTTGTATTCAATCGAATGGAACTCAACAGCCCATAATCTCAGCAGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCYCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGGTAAGAAAGCCCATTTCTAAATTTTAGAAAACTAGTCGTGTTTATATTCATTCCAATTGTCTTGACCTGCTGAATGTGAACATATAATTGCTATCCATCTATCCTAAAAATGAGTGAGCAAAGTTATAGACACTCTGCGCGCGCTCAGAAAAAGGAAAGATGCAGACAGCTAGAGTGTCTAGCTTCTCTGCGTCTCTCTGTAGTTTTTCCTAGCCGTCTTTATATTCGTTTAAACCGTCATGGTCTTTTGAAAATAGTCACACAATTTTTATTCTTCTACCTTCAAAATGAGCAAAGTTACACGCTCTTCTGTGCGCGCTCTGTGAAAGAAAAGACGCAGACAGTTAGAGAGCCTAGCTTCTATGCGTTTCTCTGCTTTCCAGTTTTTCACTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGATATTTTGTCCTGTTGTG</pcr_primer_p1>
		<pcr_primer_p2>CCAAAATGCTTATCGTTCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGG</canonical_amplicon>
		<polymorphic_amplicon>AGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCYCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31987</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>329249</contig_pos>
        <strand>+</strand>
        <context>CTACTTGTCA[A/G]GAGAAATACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCA</left_flank>
        <right_flank>GAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGGTAAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGAACACAATGATATTTCTGAGGACGAGATGAAATTCAAAGTAATGGATCAACGATTTGCGGATCCTTTGGAAGAAGAGGTTCAAGATGAGGGTTTGGTCCGTGGAGAAGTGGTCCCAGAACCCTTACCAGACACTTTTGATGCCAGGGACCAATGGCCAGACTGCAAATCATTAAAATTCATTCGAAACCAAGCCTCGTGTGGATCCTGCTGGGCATTTGGAGCAGCTGAAGTGATATCTGACCGTGTTTGTATTCAATCGAATGGAACTCAACAGCCCATAATCTCAGCAGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGGTAAGAAAGCCCATTTCTAAATTTTAGAAAACTAGTCGTGTTTATATTCATTCCAATTGTCTTGACCTGCTGAATGTGAACATATAATTGCTATCCATCTATCCTAAAAATGAGTGAGCAAAGTTATAGACACTCTGCGCGCGCTCAGAAAAAGGAAAGATGCAGACAGCTAGAGTGTCTAGCTTCTCTGCGTCTCTCTGTAGTTTTTCCTAGCCGTCTTTATATTCGTTTAAACCGTCATGGTCTTTTGAAAATAGTCACACAATTTTTATTCTTCTACCTTCAAAATGAGCAAAGTTACACGCTCTTCTGTGCGCGCTCTGTGAAAGAAAAGACGCAGACAGTTAGAGAGCCTAGCTTCTATGCGTTTCTCTGCTTTCCAGTTTTTCACTTTCCCCAAAATGTTCATATCTATTCTTCAAAAATACAGAGAAGCCCTACAATATTGAGTTGTAGA</canonical>
            <polymorphic>CCGAACACAATGATATTTCTGAGGACGAGATGAAATTCAAAGTAATGGATCAACGATTTGCGGATCCTTTGGAAGAAGAGGTTCAAGATGAGGGTTTGGTCCGTGGAGAAGTGGTCCCAGAACCCTTACCAGACACTTTTGATGCCAGGGACCAATGGCCAGACTGCAAATCATTAAAATTCATTCGAAACCAAGCCTCGTGTGGATCCTGCTGGGCATTTGGAGCAGCTGAAGTGATATCTGACCGTGTTTGTATTCAATCGAATGGAACTCAACAGCCCATAATCTCAGCAGAAGATATTTTGTCCTGTTGTGGGTCTACCTGTGGTAAAGGATGTCAAGGAGGTTATACAATTGAGGCAATGAAGTACTGGATGAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCARGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGGTAAGAAAGCCCATTTCTAAATTTTAGAAAACTAGTCGTGTTTATATTCATTCCAATTGTCTTGACCTGCTGAATGTGAACATATAATTGCTATCCATCTATCCTAAAAATGAGTGAGCAAAGTTATAGACACTCTGCGCGCGCTCAGAAAAAGGAAAGATGCAGACAGCTAGAGTGTCTAGCTTCTCTGCGTCTCTCTGTAGTTTTTCCTAGCCGTCTTTATATTCGTTTAAACCGTCATGGTCTTTTGAAAATAGTCACACAATTTTTATTCTTCTACCTTCAAAATGAGCAAAGTTACACGCTCTTCTGTGCGCGCTCTGTGAAAGAAAAGACGCAGACAGTTAGAGAGCCTAGCTTCTATGCGTTTCTCTGCTTTCCAGTTTTTCACTTTCCCCAAAATGTTCATATCTATTCTTCAAAAATACAGAGAAGCCCTACAATATTGAGTTGTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATACAATTGAGGCAATGAAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGGAATGAATATAAACACGAC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTATACAATTGAGGCAATGAAGTACTGGATGAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCAGGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGGTAAGAAAGCCCATTTCTAAATTTTAGAAAACTAGTCGTGTTTATATTCATTCCAAT</canonical_amplicon>
		<polymorphic_amplicon>TTATACAATTGAGGCAATGAAGTACTGGATGAATTCTGGAGTGGTTACTGGAGGAGACTATAATGGGGCTGGGTGTATGCCATATTCATTCCCACCTTGCAAAAAATCTCCTTGCGTTGAATTCTCGACACCCAGTTGTAAAACTACTTGTCARGAGAAATACACCACTGCGGATTATAAGAACGATAAGCATTTTGGTAAGAAAGCCCATTTCTAAATTTTAGAAAACTAGTCGTGTTTATATTCATTCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31988</snp_id>
        <super_contig>c006700780.Contig2</super_contig>
        <contig_pos>330527</contig_pos>
        <strand>+</strand>
        <context>TTCCGGGAAA[A/C]AGAGTGACTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGTTTTATCATATTATTTGTTCTAAAAATGGACAATTTTTTCCGGGAAA</left_flank>
        <right_flank>AGAGTGACTAATAAAAATAGGTCATCATTTTTTGTGTGTCTTGACGGGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGAGTATTCGAAGATTTTTATCAATACAAATCAGGAGTTTATCATCATGTATCCGGGAATTTAGTCGGAGGACATGCTGTGAAAATTATTGGATGGGGAACTGAAAATGGGGTCGATTATTGGCTGGTTGCCAATTCATGGGGTACCAGTTTCGGGGAAAAAGGATTCTTCAAAATTCGAAGAGGAACTAATGAATGTCAAATTGAATCGAATATAGTGGCTGGACTTGCTAAATTGGGAACTGTGAGATTTTAAATTTTTTGAAGTTTTTGAAATTTTGAAAATTCTGCCCATGGTTGGGCTCATTTTGACCGCCTCAGCCTACTGATTTCAAACATTTTATTTTCAAATTCTTCTAAATTAAACTGAGCAATTTACAGCACAACGAAAAAACGGACGATGACGATGGTTCGGCGACATCTTGCAGTTTTATCATGTGTACACTTCTTGTTTTATCATATTATTTGTTCTAAAAATGGACAATTTTTTCCGGGAAAAAGAGTGACTAATAAAAATAGGTCATCATTTTTTGTGTGTCTTGACGGGGCGAATTTTATAATGTATAATTTTTTTTGGTTTGATGAAATAAATCAAAAATTGTAAAATTGGAAAATTGGGGAAAGCGAGAATATTGAGTTTCAGATTTTCTGAATTTCTGAATTAAGAAATATCAGGATTTCAGAATATCAGAATTTCAGAAACTTAGAGTTTCAGAATTTCAAAATTTTCGAATCTCTAGATTTTCAAAACTCCTGAACTTCAGGTTCTTTAGAATTTGTGAATTCTTTTTTAATTTCCGAATTTCCGAATTTTTTGATTTTTCGGATTTATGAACTTATGATTTTCAGAATTTCAGATTTTTTCAGAATTTTTTTTTGATTTTATTGGAACTCGAGGATTTTTCTGATTCAGTTTTTTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAT</canonical>
            <polymorphic>ACAGAGTATTCGAAGATTTTTATCAATACAAATCAGGAGTTTATCATCATGTATCCGGGAATTTAGTCGGAGGACATGCTGTGAAAATTATTGGATGGGGAACTGAAAATGGGGTCGATTATTGGCTGGTTGCCAATTCATGGGGTACCAGTTTCGGGGAAAAAGGATTCTTCAAAATTCGAAGAGGAACTAATGAATGTCAAATTGAATCGAATATAGTGGCTGGACTTGCTAAATTGGGAACTGTGAGATTTTAAATTTTTTGAAGTTTTTGAAATTTTGAAAATTCTGCCCATGGTTGGGCTCATTTTGACCGCCTCAGCCTACTGATTTCAAACATTTTATTTTCAAATTCTTCTAAATTAAACTGAGCAATTTACAGCACAACGAAAAAACGGACGATGACGATGGTTCGGCGACATCTTGCAGTTTTATCATGTGTACACTTCTTGTTTTATCATATTATTTGTTCTAAAAATGGACAATTTTTTCCGGGAAAMAGAGTGACTAATAAAAATAGGTCATCATTTTTTGTGTGTCTTGACGGGGCGAATTTTATAATGTATAATTTTTTTTGGTTTGATGAAATAAATCAAAAATTGTAAAATTGGAAAATTGGGGAAAGCGAGAATATTGAGTTTCAGATTTTCTGAATTTCTGAATTAAGAAATATCAGGATTTCAGAATATCAGAATTTCAGAAACTTAGAGTTTCAGAATTTCAAAATTTTCGAATCTCTAGATTTTCAAAACTCCTGAACTTCAGGTTCTTTAGAATTTGTGAATTCTTTTTTAATTTCCGAATTTCCGAATTTTTTGATTTTTCGGATTTATGAACTTATGATTTTCAGAATTTCAGATTTTTTCAGAATTTTTTTTTGATTTTATTGGAACTCGAGGATTTTTCTGATTCAGTTTTTTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACATCTTGCAGTTTTATCATGT</pcr_primer_p1>
		<pcr_primer_p2>CCCAATTTTCCAATTTTACA</pcr_primer_p2>
		<pcr_amplicon_size>203</pcr_amplicon_size>
		<canonical_amplicon>GACATCTTGCAGTTTTATCATGTGTACACTTCTTGTTTTATCATATTATTTGTTCTAAAAATGGACAATTTTTTCCGGGAAAAAGAGTGACTAATAAAAATAGGTCATCATTTTTTGTGTGTCTTGACGGGGCGAATTTTATAATGTATAATTTTTTTTGGTTTGATGAAATAAATCAAAAATTGTAAAATTGGAAAATTGGG</canonical_amplicon>
		<polymorphic_amplicon>GACATCTTGCAGTTTTATCATGTGTACACTTCTTGTTTTATCATATTATTTGTTCTAAAAATGGACAATTTTTTCCGGGAAAMAGAGTGACTAATAAAAATAGGTCATCATTTTTTGTGTGTCTTGACGGGGCGAATTTTATAATGTATAATTTTTTTTGGTTTGATGAAATAAATCAAAAATTGTAAAATTGGAAAATTGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31992</snp_id>
        <super_contig>c006700934.Contig1</super_contig>
        <contig_pos>32887</contig_pos>
        <strand></strand>
        <context>atatttgatg[C/T]tgagcaattt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTGAGCTAGACAAATTTTGAAAAATGAAAAATGTGTGATATTTGATG</left_flank>
        <right_flank>TGAGCAATTTTGTAGTTTACACTTTTTATCTAGCTACCTTACTTTTTGAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTATCTCTCTTTCTATACATTTTTACACAAAAATATACGTTCGAAAACTCATAAAGCGTCTTCTCTAAGAATGATTTTCTACGATTTTTCTTTTATTTTCAATCATTTTCGCACAATTTTCAACCAGTATGCCCCTTTAAATCTAGGTAATCTAGGTAACAAAAGCGGCAAGGTGTCAATTAAACTTTAAAGGCGCATAACATGGTTCAAAATTGAGCTAGACAAAATTTAAAACATGGAAAGTGTAGAAAATTTAATGCTGAGCAATTTTACAGTTTGGCATTTGCGATATTTTGATATTTGCGCCTTTAAAGAGACACAAGAGCGGCGCTAGGATTCGGAGTGTCACCCAAACTTTGAAGGCGCATAACTTGGTTTTAAATTGAGCTAGACAAATTTTGAAAAATGAAAAATGTGTGATATTTGATGCTGAGCAATTTTGTAGTTTACACTTTTTATCTAGCTACCTTACTTTTTGAGATATGCGCCTTTAAATCTAGGTAACCTCTATTTCTCTGCGTCTCTTTCTCTCTCTCTCTCTCTCATCGGATTTGTTCCTGTATTTCTGTGGGTGTTTTATGTTAATAATTGGCATCTCCTTTGGGTTATTATAAGAAAAAACGAGCGACGGAATTAGCCACCCCCGACGACGTTGTAATTTTCTTTTCCGAAGAAGAAGACGACAACGTCTTCTTCCTCTAAACCCTGTCATCATCTTCTCCAGGATTCCTAGAAATTGTCCTTATATCCTAGAACCTAATCCAACCTTCCCATGTCATTTCATTCAATTTCTAGTCATACAATTTGTAGAAAGTAGTCCTAGAAATTGAACTAAAATGTGTTGTAATTAGCTCAAAATTCGTTAAAAAGAACTTAAAATTAATAACAAATGGACCAAAATGAGCTGAAATGTGTTCCAGGCGCCCAACA</canonical>
            <polymorphic>CCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTATCTCTCTTTCTATACATTTTTACACAAAAATATACGTTCGAAAACTCATAAAGCGTCTTCTCTAAGAATGATTTTCTACGATTTTTCTTTTATTTTCAATCATTTTCGCACAATTTTCAACCAGTATGCCCCTTTAAATCTAGGTAATCTAGGTAACAAAAGCGGCAAGGTGTCAATTAAACTTTAAAGGCGCATAACATGGTTCAAAATTGAGCTAGACAAAATTTAAAACATGGAAAGTGTAGAAAATTTAATGCTGAGCAATTTTACAGTTTGGCATTTGCGATATTTTGATATTTGCGCCTTTAAAGAGACACAAGAGCGGCGCTAGGATTCGGAGTGTCACCCAAACTTTGAAGGCGCATAACTTGGTTTTAAATTGAGCTAGACAAATTTTGAAAAATGAAAAATGTGTGATATTTGATGYTGAGCAATTTTGTAGTTTACACTTTTTATCTAGCTACCTTACTTTTTGAGATATGCGCCTTTAAATCTAGGTAACCTCTATTTCTCTGCGTCTCTTTCTCTCTCTCTCTCTCTCATCGGATTTGTTCCTGTATTTCTGTGGGTGTTTTATGTTAATAATTGGCATCTCCTTTGGGTTATTATAAGAAAAAACGAGCGACGGAATTAGCCACCCCCGACGACGTTGTAATTTTCTTTTCCGAAGAAGAAGACGACAACGTCTTCTTCCTCTAAACCCTGTCATCATCTTCTCCAGGATTCCTAGAAATTGTCCTTATATCCTAGAACCTAATCCAACCTTCCCATGTCATTTCATTCAATTTCTAGTCATACAATTTGTAGAAAGTAGTCCTAGAAATTGAACTAAAATGTGTTGTAATTAGCTCAAAATTCGTTAAAAAGAACTTAAAATTAATAACAAATGGACCAAAATGAGCTGAAATGTGTTCCAGGCGCCCAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCTNAGC</site>
                <isoschizomers>
                    <enzyme>BlpI</enzyme>
                    <enzyme>Bpu1102I</enzyme>
                    <enzyme>Bsp1720I</enzyme>
                    <enzyme>CelII</enzyme>
                    <enzyme>EspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 330 170</canonical_bands>
                <polymorphic_bands>670 330</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 195 170 135</canonical_bands>
                <polymorphic_bands>670 195 135</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCGCACAATTTTCAAC</pcr_primer_p1>
		<pcr_primer_p2>CCACAGAAATACAGGAACAAAT</pcr_primer_p2>
		<pcr_amplicon_size>467</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCGCACAATTTTCAACCAGTATGCCCCTTTAAATCTAGGTAATCTAGGTAACAAAAGCGGCAAGGTGTCAATTAAACTTTAAAGGCGCATAACATGGTTCAAAATTGAGCTAGACAAAATTTAAAACATGGAAAGTGTAGAAAATTTAATGCTGAGCAATTTTACAGTTTGGCATTTGCGATATTTTGATATTTGCGCCTTTAAAGAGACACAAGAGCGGCGCTAGGATTCGGAGTGTCACCCAAACTTTGAAGGCGCATAACTTGGTTTTAAATTGAGCTAGACAAATTTTGAAAAATGAAAAATGTGTGATATTTGATGCTGAGCAATTTTGTAGTTTACACTTTTTATCTAGCTACCTTACTTTTTGAGATATGCGCCTTTAAATCTAGGTAACCTCTATTTCTCTGCGTCTCTTTCTCTCTCTCTCTCTCTCATCGGATTTGTTCCTGTATTTCTGTGG</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCGCACAATTTTCAACCAGTATGCCCCTTTAAATCTAGGTAATCTAGGTAACAAAAGCGGCAAGGTGTCAATTAAACTTTAAAGGCGCATAACATGGTTCAAAATTGAGCTAGACAAAATTTAAAACATGGAAAGTGTAGAAAATTTAATGCTGAGCAATTTTACAGTTTGGCATTTGCGATATTTTGATATTTGCGCCTTTAAAGAGACACAAGAGCGGCGCTAGGATTCGGAGTGTCACCCAAACTTTGAAGGCGCATAACTTGGTTTTAAATTGAGCTAGACAAATTTTGAAAAATGAAAAATGTGTGATATTTGATGYTGAGCAATTTTGTAGTTTACACTTTTTATCTAGCTACCTTACTTTTTGAGATATGCGCCTTTAAATCTAGGTAACCTCTATTTCTCTGCGTCTCTTTCTCTCTCTCTCTCTCTCATCGGATTTGTTCCTGTATTTCTGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31993</snp_id>
        <super_contig>c006700934.Contig1</super_contig>
        <contig_pos>65225</contig_pos>
        <strand>+</strand>
        <context>AGAAAGAGAG[A/G]CAAKTTGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGGACAAAAAATCATTGAAAAAGATAGAAAAAAAAAGAGAGAAAGAGAG</left_flank>
        <right_flank>CAAATTGTTTGTAAACATAACCCCCTTACCAACTAAACCAACACCCCCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGCGCCCTTTTTTAGCCCGCCGTGCCCACATGAGAGCGCCGCCTGCACCCCTCTCTATTTAAAAGCGCATATCTCCAAAACTACAGTACCTATCAAAACGTTGCAAACTACAAAAATGTGTAAAATTTTATGCTGAGCAATTTCGCAGTTGTCAACTTTTTGATAGCTAGCTTGGTTTTTGAGATATGCAATGATTTCTGAGGTGTACTTTTTTTTCAATTTTTTATAAAAATCACGATTGCTCAGCTCAAACTCGAGCTATTTCAATTTTCTAAAAAGGTCGAAATATCAAATATCAGGGGTTTTTAAGAATAATTATTATTTTCAAAATAACTTTTTTTCAGTTTTCGAGATATTTCAAAAATTCAACTTGTTGGTTGAACTCTGAATTTCACCCCTACTATCATTATATCAGTGACACTGTGCAAAAACCGATTAAAACCAAACCAGGGACAAAAAATCATTGAAAAAGATAGAAAAAAAAAGAGAGAAAGAGAGACAAATTGTTTGTAAACATAACCCCCTTACCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTGCGTCTCTCGCCATTTTCTGTACTTTTTCGTTTTTTTTTTTCATCGTCAAAAAAAGTTGGTTTTCGCCGCTCTCTCTGCAACCCCAATTCATAAACGATGTGCTGTGACCATCTTTTTGACTTTTTGGCGCCAAAACCAAAATTATTCTTCAAAACGTTTTTTTTTTTCAAAATTTCTCCAATTCTTCATTTTGTTTCTCATAAGTATGCTGTATCATTCAAAAGCCCTTGAAATTTCCTACAAAACCGTTTTTGTTTCAAATCTCTAGCTCAAAATTAAAGCGAGTTGTGCGCCTTTAAAGAGACGCAGGGAAGTTAGAGCGCTCTCGCTTCTCTGCGTCTCCTGGACAGCTAACTTTAAAGGCGCATATCTCCAAAACGAATAAGGCAAAATGAAAAATTTAAAAACCATTGGATTTCAAATTTCATGAGC</canonical>
            <polymorphic>CGGCGCCCTTTTTTAGCCCGCCGTGCCCACATGAGAGCGCCGCCTGCACCCCTCTCTATTTAAAAGCGCATATCTCCAAAACTACAGTACCTATCAAAACGTTGCAAACTACAAAAATGTGTAAAATTTTATGCTGAGCAATTTCGCAGTTGTCAACTTTTTGATAGCTAGCTTGGTTTTTGAGATATGCAATGATTTCTGAGGTGTACTTTTTTTTCAATTTTTTATAAAAATCACGATTGCTCAGCTCAAACTCGAGCTATTTCAATTTTCTAAAAAGGTCGAAATATCAAATATCAGGGGTTTTTAAGAATAATTATTATTTTCAAAATAACTTTTTTTCAGTTTTCGAGATATTTCAAAAATTCAACTTGTTGGTTGAACTCTGAATTTCACCCCTACTATCATTATATCAGTGACACTGTGCAAAAACCGATTAAAACCAAACCAGGGACAAAAAATCATTGAAAAAGATAGAAAAAAAAAGAGAGAAAGAGAGRCAAATTGTTTGTAAACATAACCCCCTTACCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTGCGTCTCTCGCCATTTTCTGTACTTTTTCGTTTTTTTTTTTCATCGTCAAAAAAAGTTGGTTTTCGCCGCTCTCTCTGCAACCCCAATTCATAAACGATGTGCTGTGACCATCTTTTTGACTTTTTGGCGCCAAAACCAAAATTATTCTTCAAAACGTTTTTTTTTTTCAAAATTTCTCCAATTCTTCATTTTGTTTCTCATAAGTATGCTGTATCATTCAAAAGCCCTTGAAATTTCCTACAAAACCGTTTTTGTTTCAAATCTCTAGCTCAAAATTAAAGCGAGTTGTGCGCCTTTAAAGAGACGCAGGGAAGTTAGAGCGCTCTCGCTTCTCTGCGTCTCCTGGACAGCTAACTTTAAAGGCGCATATCTCCAAAACGAATAAGGCAAAATGAAAAATTTAAAAACCATTGGATTTCAAATTTCATGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGATATTTCAAAAATTCAACT</pcr_primer_p1>
		<pcr_primer_p2>AAAACGAAAAAGTACAGAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGAGATATTTCAAAAATTCAACTTGTTGGTTGAACTCTGAATTTCACCCCTACTATCATTATATCAGTGACACTGTGCAAAAACCGATTAAAACCAAACCAGGGACAAAAAATCATTGAAAAAGATAGAAAAAAAAAGAGAGAAAGAGAGACAAATTGTTTGTAAACATAACCCCCTTACCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTGCGTCTCTCGCCATTTTCTGTACTTTTTCGTTTT</canonical_amplicon>
		<polymorphic_amplicon>CGAGATATTTCAAAAATTCAACTTGTTGGTTGAACTCTGAATTTCACCCCTACTATCATTATATCAGTGACACTGTGCAAAAACCGATTAAAACCAAACCAGGGACAAAAAATCATTGAAAAAGATAGAAAAAAAAAGAGAGAAAGAGAGRCAAATTGTTTGTAAACATAACCCCCTTACCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTGCGTCTCTCGCCATTTTCTGTACTTTTTCGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31994</snp_id>
        <super_contig>c006700934.Contig1</super_contig>
        <contig_pos>65229</contig_pos>
        <strand>+</strand>
        <context>AGAGAGRCAA[G/T]TTGTTTGTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACAAAAAATCATTGAAAAAGATAGAAAAAAAAAGAGAGAAAGAGAGACAA</left_flank>
        <right_flank>TTGTTTGTAAACATAACCCCCTTACCAACTAAACCAACACCCCCTCCCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCCTTTTTTAGCCCGCCGTGCCCACATGAGAGCGCCGCCTGCACCCCTCTCTATTTAAAAGCGCATATCTCCAAAACTACAGTACCTATCAAAACGTTGCAAACTACAAAAATGTGTAAAATTTTATGCTGAGCAATTTCGCAGTTGTCAACTTTTTGATAGCTAGCTTGGTTTTTGAGATATGCAATGATTTCTGAGGTGTACTTTTTTTTCAATTTTTTATAAAAATCACGATTGCTCAGCTCAAACTCGAGCTATTTCAATTTTCTAAAAAGGTCGAAATATCAAATATCAGGGGTTTTTAAGAATAATTATTATTTTCAAAATAACTTTTTTTCAGTTTTCGAGATATTTCAAAAATTCAACTTGTTGGTTGAACTCTGAATTTCACCCCTACTATCATTATATCAGTGACACTGTGCAAAAACCGATTAAAACCAAACCAGGGACAAAAAATCATTGAAAAAGATAGAAAAAAAAAGAGAGAAAGAGAGACAAATTGTTTGTAAACATAACCCCCTTACCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTGCGTCTCTCGCCATTTTCTGTACTTTTTCGTTTTTTTTTTTCATCGTCAAAAAAAGTTGGTTTTCGCCGCTCTCTCTGCAACCCCAATTCATAAACGATGTGCTGTGACCATCTTTTTGACTTTTTGGCGCCAAAACCAAAATTATTCTTCAAAACGTTTTTTTTTTTCAAAATTTCTCCAATTCTTCATTTTGTTTCTCATAAGTATGCTGTATCATTCAAAAGCCCTTGAAATTTCCTACAAAACCGTTTTTGTTTCAAATCTCTAGCTCAAAATTAAAGCGAGTTGTGCGCCTTTAAAGAGACGCAGGGAAGTTAGAGCGCTCTCGCTTCTCTGCGTCTCCTGGACAGCTAACTTTAAAGGCGCATATCTCCAAAACGAATAAGGCAAAATGAAAAATTTAAAAACCATTGGATTTCAAATTTCATGAGCTATG</canonical>
            <polymorphic>GCCCTTTTTTAGCCCGCCGTGCCCACATGAGAGCGCCGCCTGCACCCCTCTCTATTTAAAAGCGCATATCTCCAAAACTACAGTACCTATCAAAACGTTGCAAACTACAAAAATGTGTAAAATTTTATGCTGAGCAATTTCGCAGTTGTCAACTTTTTGATAGCTAGCTTGGTTTTTGAGATATGCAATGATTTCTGAGGTGTACTTTTTTTTCAATTTTTTATAAAAATCACGATTGCTCAGCTCAAACTCGAGCTATTTCAATTTTCTAAAAAGGTCGAAATATCAAATATCAGGGGTTTTTAAGAATAATTATTATTTTCAAAATAACTTTTTTTCAGTTTTCGAGATATTTCAAAAATTCAACTTGTTGGTTGAACTCTGAATTTCACCCCTACTATCATTATATCAGTGACACTGTGCAAAAACCGATTAAAACCAAACCAGGGACAAAAAATCATTGAAAAAGATAGAAAAAAAAAGAGAGAAAGAGAGACAAKTTGTTTGTAAACATAACCCCCTTACCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTGCGTCTCTCGCCATTTTCTGTACTTTTTCGTTTTTTTTTTTCATCGTCAAAAAAAGTTGGTTTTCGCCGCTCTCTCTGCAACCCCAATTCATAAACGATGTGCTGTGACCATCTTTTTGACTTTTTGGCGCCAAAACCAAAATTATTCTTCAAAACGTTTTTTTTTTTCAAAATTTCTCCAATTCTTCATTTTGTTTCTCATAAGTATGCTGTATCATTCAAAAGCCCTTGAAATTTCCTACAAAACCGTTTTTGTTTCAAATCTCTAGCTCAAAATTAAAGCGAGTTGTGCGCCTTTAAAGAGACGCAGGGAAGTTAGAGCGCTCTCGCTTCTCTGCGTCTCCTGGACAGCTAACTTTAAAGGCGCATATCTCCAAAACGAATAAGGCAAAATGAAAAATTTAAAAACCATTGGATTTCAAATTTCATGAGCTATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>150 124 120 114 79 55 52 49 48 48 42 31 25 23 16 15 9</canonical_bands>
                <polymorphic_bands>264 124 120 79 55 52 49 48 48 42 31 25 23 16 15 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAGATATTTCAAAAATTCAACT</pcr_primer_p1>
		<pcr_primer_p2>AAAACGAAAAAGTACAGAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGAGATATTTCAAAAATTCAACTTGTTGGTTGAACTCTGAATTTCACCCCTACTATCATTATATCAGTGACACTGTGCAAAAACCGATTAAAACCAAACCAGGGACAAAAAATCATTGAAAAAGATAGAAAAAAAAAGAGAGAAAGAGAGACAAATTGTTTGTAAACATAACCCCCTTACCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTGCGTCTCTCGCCATTTTCTGTACTTTTTCGTTTT</canonical_amplicon>
		<polymorphic_amplicon>CGAGATATTTCAAAAATTCAACTTGTTGGTTGAACTCTGAATTTCACCCCTACTATCATTATATCAGTGACACTGTGCAAAAACCGATTAAAACCAAACCAGGGACAAAAAATCATTGAAAAAGATAGAAAAAAAAAGAGAGAAAGAGAGACAAKTTGTTTGTAAACATAACCCCCTTACCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTGCGTCTCTCGCCATTTTCTGTACTTTTTCGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31995</snp_id>
        <super_contig>c006700934.Contig1</super_contig>
        <contig_pos>65453</contig_pos>
        <strand>+</strand>
        <context>CAAAACGTTT[C/T]TTTTTTTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTTTTTGACTTTTTGGCGCCAAAACCAAAATTATTCTTCAAAACGTTT</left_flank>
        <right_flank>TTTTTTTCAAAATTTCTCCAATTCTTCATTTTGTTTCTCATAAGTATGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATCACGATTGCTCAGCTCAAACTCGAGCTATTTCAATTTTCTAAAAAGGTCGAAATATCAAATATCAGGGGTTTTTAAGAATAATTATTATTTTCAAAATAACTTTTTTTCAGTTTTCGAGATATTTCAAAAATTCAACTTGTTGGTTGAACTCTGAATTTCACCCCTACTATCATTATATCAGTGACACTGTGCAAAAACCGATTAAAACCAAACCAGGGACAAAAAATCATTGAAAAAGATAGAAAAAAAAAGAGAGAAAGAGAGACAAATTGTTTGTAAACATAACCCCCTTACCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTGCGTCTCTCGCCATTTTCTGTACTTTTTCGTTTTTTTTTTTCATCGTCAAAAAAAGTTGGTTTTCGCCGCTCTCTCTGCAACCCCAATTCATAAACGATGTGCTGTGACCATCTTTTTGACTTTTTGGCGCCAAAACCAAAATTATTCTTCAAAACGTTTTTTTTTTTCAAAATTTCTCCAATTCTTCATTTTGTTTCTCATAAGTATGCTGTATCATTCAAAAGCCCTTGAAATTTCCTACAAAACCGTTTTTGTTTCAAATCTCTAGCTCAAAATTAAAGCGAGTTGTGCGCCTTTAAAGAGACGCAGGGAAGTTAGAGCGCTCTCGCTTCTCTGCGTCTCCTGGACAGCTAACTTTAAAGGCGCATATCTCCAAAACGAATAAGGCAAAATGAAAAATTTAAAAACCATTGGATTTCAAATTTCATGAGCTATGTTTTTGTAGTTTGTAGCGTTTTGATAGCTTTATTGGTTTTTGAGATAGAGACGCAGATAGTTAGAGTGTCTCGTTTCTCGGCGCTTCTCTTGGCGCGCGCTAACTTTAAAGGCGCATATCTCAAAAACCGTAATAGCTATCAGAAAGTTGTAATCTACAAAAATGTATAAAATTTTATGCTGAGCAATTTTGTAGTTTATAATTTTGCCTAACTATTATCGCTT</canonical>
            <polymorphic>AAAAATCACGATTGCTCAGCTCAAACTCGAGCTATTTCAATTTTCTAAAAAGGTCGAAATATCAAATATCAGGGGTTTTTAAGAATAATTATTATTTTCAAAATAACTTTTTTTCAGTTTTCGAGATATTTCAAAAATTCAACTTGTTGGTTGAACTCTGAATTTCACCCCTACTATCATTATATCAGTGACACTGTGCAAAAACCGATTAAAACCAAACCAGGGACAAAAAATCATTGAAAAAGATAGAAAAAAAAAGAGAGAAAGAGAGACAAATTGTTTGTAAACATAACCCCCTTACCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTGCGTCTCTCGCCATTTTCTGTACTTTTTCGTTTTTTTTTTTCATCGTCAAAAAAAGTTGGTTTTCGCCGCTCTCTCTGCAACCCCAATTCATAAACGATGTGCTGTGACCATCTTTTTGACTTTTTGGCGCCAAAACCAAAATTATTCTTCAAAACGTTTYTTTTTTTCAAAATTTCTCCAATTCTTCATTTTGTTTCTCATAAGTATGCTGTATCATTCAAAAGCCCTTGAAATTTCCTACAAAACCGTTTTTGTTTCAAATCTCTAGCTCAAAATTAAAGCGAGTTGTGCGCCTTTAAAGAGACGCAGGGAAGTTAGAGCGCTCTCGCTTCTCTGCGTCTCCTGGACAGCTAACTTTAAAGGCGCATATCTCCAAAACGAATAAGGCAAAATGAAAAATTTAAAAACCATTGGATTTCAAATTTCATGAGCTATGTTTTTGTAGTTTGTAGCGTTTTGATAGCTTTATTGGTTTTTGAGATAGAGACGCAGATAGTTAGAGTGTCTCGTTTCTCGGCGCTTCTCTTGGCGCGCGCTAACTTTAAAGGCGCATATCTCAAAAACCGTAATAGCTATCAGAAAGTTGTAATCTACAAAAATGTATAAAATTTTATGCTGAGCAATTTTGTAGTTTATAATTTTGCCTAACTATTATCGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGACCATCTTTTTGACTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTGATTTTGAGGTGAGATACAGT</pcr_primer_p2>
		<pcr_amplicon_size>618</pcr_amplicon_size>
		<canonical_amplicon>GTGACCATCTTTTTGACTTTTTGGCGCCAAAACCAAAATTATTCTTCAAAACGTTTTTTTTTTTCAAAATTTCTCCAAT</canonical_amplicon>
		<polymorphic_amplicon>GTGACCATCTTTTTGACTTTTTGGCGCCAAAACCAAAATTATTCTTCAAAACGTTTYTTTTTTTCAAAATTTCTCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31996</snp_id>
        <super_contig>c006700934.Contig1</super_contig>
        <contig_pos>65490</contig_pos>
        <strand></strand>
        <context>YATTTTGttt[C/T]tcrtaagtat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTCAAAACGTTTTTTTTTTTCAAAATTTCTCCAATTCTTCATTTTGTTT</left_flank>
        <right_flank>TCATAAGTATGCTGTATCATTCAAAAGCCCTTGAAATTTCCTACAAAACC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTTTCTAAAAAGGTCGAAATATCAAATATCAGGGGTTTTTAAGAATAATTATTATTTTCAAAATAACTTTTTTTCAGTTTTCGAGATATTTCAAAAATTCAACTTGTTGGTTGAACTCTGAATTTCACCCCTACTATCATTATATCAGTGACACTGTGCAAAAACCGATTAAAACCAAACCAGGGACAAAAAATCATTGAAAAAGATAGAAAAAAAAAGAGAGAAAGAGAGACAAATTGTTTGTAAACATAACCCCCTTACCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTGCGTCTCTCGCCATTTTCTGTACTTTTTCGTTTTTTTTTTTCATCGTCAAAAAAAGTTGGTTTTCGCCGCTCTCTCTGCAACCCCAATTCATAAACGATGTGCTGTGACCATCTTTTTGACTTTTTGGCGCCAAAACCAAAATTATTCTTCAAAACGTTTTTTTTTTTCAAAATTTCTCCAATTCTTCATTTTGTTTCTCATAAGTATGCTGTATCATTCAAAAGCCCTTGAAATTTCCTACAAAACCGTTTTTGTTTCAAATCTCTAGCTCAAAATTAAAGCGAGTTGTGCGCCTTTAAAGAGACGCAGGGAAGTTAGAGCGCTCTCGCTTCTCTGCGTCTCCTGGACAGCTAACTTTAAAGGCGCATATCTCCAAAACGAATAAGGCAAAATGAAAAATTTAAAAACCATTGGATTTCAAATTTCATGAGCTATGTTTTTGTAGTTTGTAGCGTTTTGATAGCTTTATTGGTTTTTGAGATAGAGACGCAGATAGTTAGAGTGTCTCGTTTCTCGGCGCTTCTCTTGGCGCGCGCTAACTTTAAAGGCGCATATCTCAAAAACCGTAATAGCTATCAGAAAGTTGTAATCTACAAAAATGTATAAAATTTTATGCTGAGCAATTTTGTAGTTTATAATTTTGCCTAACTATTATCGCTTTTTGAATAATTTTGATTTACGCAGGCAACTCATTTTT</canonical>
            <polymorphic>CAATTTTCTAAAAAGGTCGAAATATCAAATATCAGGGGTTTTTAAGAATAATTATTATTTTCAAAATAACTTTTTTTCAGTTTTCGAGATATTTCAAAAATTCAACTTGTTGGTTGAACTCTGAATTTCACCCCTACTATCATTATATCAGTGACACTGTGCAAAAACCGATTAAAACCAAACCAGGGACAAAAAATCATTGAAAAAGATAGAAAAAAAAAGAGAGAAAGAGAGACAAATTGTTTGTAAACATAACCCCCTTACCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTGCGTCTCTCGCCATTTTCTGTACTTTTTCGTTTTTTTTTTTCATCGTCAAAAAAAGTTGGTTTTCGCCGCTCTCTCTGCAACCCCAATTCATAAACGATGTGCTGTGACCATCTTTTTGACTTTTTGGCGCCAAAACCAAAATTATTCTTCAAAACGTTTTTTTTTTTCAAAATTTCTCCAATTCTTCATTTTGTTTYTCATAAGTATGCTGTATCATTCAAAAGCCCTTGAAATTTCCTACAAAACCGTTTTTGTTTCAAATCTCTAGCTCAAAATTAAAGCGAGTTGTGCGCCTTTAAAGAGACGCAGGGAAGTTAGAGCGCTCTCGCTTCTCTGCGTCTCCTGGACAGCTAACTTTAAAGGCGCATATCTCCAAAACGAATAAGGCAAAATGAAAAATTTAAAAACCATTGGATTTCAAATTTCATGAGCTATGTTTTTGTAGTTTGTAGCGTTTTGATAGCTTTATTGGTTTTTGAGATAGAGACGCAGATAGTTAGAGTGTCTCGTTTCTCGGCGCTTCTCTTGGCGCGCGCTAACTTTAAAGGCGCATATCTCAAAAACCGTAATAGCTATCAGAAAGTTGTAATCTACAAAAATGTATAAAATTTTATGCTGAGCAATTTTGTAGTTTATAATTTTGCCTAACTATTATCGCTTTTTGAATAATTTTGATTTACGCAGGCAACTCATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGACCATCTTTTTGACTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTGATTTTGAGGTGAGATACAGT</pcr_primer_p2>
		<pcr_amplicon_size>618</pcr_amplicon_size>
		<canonical_amplicon>GTGACCATCTTTTTGACTTTTTGGCGCCAAAACCAAAATTATTCTTCAAAACGTTTTTTTTTTTCAAAATTTCTCCAATTCTTCATTTTGTTTCTCATAAGTATGCTGTATCATTC</canonical_amplicon>
		<polymorphic_amplicon>GTGACCATCTTTTTGACTTTTTGGCGCCAAAACCAAAATTATTCTTCAAAACGTTTTTTTTTTTCAAAATTTCTCCAATTCTTCATTTTGTTTYTCATAAGTATGCTGTATCATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31997</snp_id>
        <super_contig>c006700934.Contig1</super_contig>
        <contig_pos>65493</contig_pos>
        <strand></strand>
        <context>TTTGtttytc[A/G]taagtatgct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAAACGTTTTTTTTTTTCAAAATTTCTCCAATTCTTCATTTTGTTTCTC</left_flank>
        <right_flank>TAAGTATGCTGTATCATTCAAAAGCCCTTGAAATTTCCTACAAAACCGTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCTAAAAAGGTCGAAATATCAAATATCAGGGGTTTTTAAGAATAATTATTATTTTCAAAATAACTTTTTTTCAGTTTTCGAGATATTTCAAAAATTCAACTTGTTGGTTGAACTCTGAATTTCACCCCTACTATCATTATATCAGTGACACTGTGCAAAAACCGATTAAAACCAAACCAGGGACAAAAAATCATTGAAAAAGATAGAAAAAAAAAGAGAGAAAGAGAGACAAATTGTTTGTAAACATAACCCCCTTACCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTGCGTCTCTCGCCATTTTCTGTACTTTTTCGTTTTTTTTTTTCATCGTCAAAAAAAGTTGGTTTTCGCCGCTCTCTCTGCAACCCCAATTCATAAACGATGTGCTGTGACCATCTTTTTGACTTTTTGGCGCCAAAACCAAAATTATTCTTCAAAACGTTTTTTTTTTTCAAAATTTCTCCAATTCTTCATTTTGTTTCTCATAAGTATGCTGTATCATTCAAAAGCCCTTGAAATTTCCTACAAAACCGTTTTTGTTTCAAATCTCTAGCTCAAAATTAAAGCGAGTTGTGCGCCTTTAAAGAGACGCAGGGAAGTTAGAGCGCTCTCGCTTCTCTGCGTCTCCTGGACAGCTAACTTTAAAGGCGCATATCTCCAAAACGAATAAGGCAAAATGAAAAATTTAAAAACCATTGGATTTCAAATTTCATGAGCTATGTTTTTGTAGTTTGTAGCGTTTTGATAGCTTTATTGGTTTTTGAGATAGAGACGCAGATAGTTAGAGTGTCTCGTTTCTCGGCGCTTCTCTTGGCGCGCGCTAACTTTAAAGGCGCATATCTCAAAAACCGTAATAGCTATCAGAAAGTTGTAATCTACAAAAATGTATAAAATTTTATGCTGAGCAATTTTGTAGTTTATAATTTTGCCTAACTATTATCGCTTTTTGAATAATTTTGATTTACGCAGGCAACTCATTTTTGAC</canonical>
            <polymorphic>TTTTCTAAAAAGGTCGAAATATCAAATATCAGGGGTTTTTAAGAATAATTATTATTTTCAAAATAACTTTTTTTCAGTTTTCGAGATATTTCAAAAATTCAACTTGTTGGTTGAACTCTGAATTTCACCCCTACTATCATTATATCAGTGACACTGTGCAAAAACCGATTAAAACCAAACCAGGGACAAAAAATCATTGAAAAAGATAGAAAAAAAAAGAGAGAAAGAGAGACAAATTGTTTGTAAACATAACCCCCTTACCAACTAAACCAACACCCCCTCCCCATCTTCTTTTCTCTGCGTCTCTCGCCATTTTCTGTACTTTTTCGTTTTTTTTTTTCATCGTCAAAAAAAGTTGGTTTTCGCCGCTCTCTCTGCAACCCCAATTCATAAACGATGTGCTGTGACCATCTTTTTGACTTTTTGGCGCCAAAACCAAAATTATTCTTCAAAACGTTTTTTTTTTTCAAAATTTCTCCAATTCTTCATTTTGTTTCTCRTAAGTATGCTGTATCATTCAAAAGCCCTTGAAATTTCCTACAAAACCGTTTTTGTTTCAAATCTCTAGCTCAAAATTAAAGCGAGTTGTGCGCCTTTAAAGAGACGCAGGGAAGTTAGAGCGCTCTCGCTTCTCTGCGTCTCCTGGACAGCTAACTTTAAAGGCGCATATCTCCAAAACGAATAAGGCAAAATGAAAAATTTAAAAACCATTGGATTTCAAATTTCATGAGCTATGTTTTTGTAGTTTGTAGCGTTTTGATAGCTTTATTGGTTTTTGAGATAGAGACGCAGATAGTTAGAGTGTCTCGTTTCTCGGCGCTTCTCTTGGCGCGCGCTAACTTTAAAGGCGCATATCTCAAAAACCGTAATAGCTATCAGAAAGTTGTAATCTACAAAAATGTATAAAATTTTATGCTGAGCAATTTTGTAGTTTATAATTTTGCCTAACTATTATCGCTTTTTGAATAATTTTGATTTACGCAGGCAACTCATTTTTGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGACCATCTTTTTGACTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTGATTTTGAGGTGAGATACAGT</pcr_primer_p2>
		<pcr_amplicon_size>618</pcr_amplicon_size>
		<canonical_amplicon>GTGACCATCTTTTTGACTTTTTGGCGCCAAAACCAAAATTATTCTTCAAAACGTTTTTTTTTTTCAAAATTTCTCCAATTCTTCATTTTGTTTCTCATAAGTATGCTGTATCATTCAAA</canonical_amplicon>
		<polymorphic_amplicon>GTGACCATCTTTTTGACTTTTTGGCGCCAAAACCAAAATTATTCTTCAAAACGTTTTTTTTTTTCAAAATTTCTCCAATTCTTCATTTTGTTTCTCRTAAGTATGCTGTATCATTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31998</snp_id>
        <super_contig>c006700934.Contig1</super_contig>
        <contig_pos>67071</contig_pos>
        <strand>+</strand>
        <context>GCGCRGAACG[G/T]GGAGCGGAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACG</left_flank>
        <right_flank>GGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCAGTTTTTTGTAGTTTCAAAAGCTAAAAAATAGTTTGAAAGAGAGTTTTGACCGTTTTCTGATCTTATCTATCCCATTTTCCAGAATTAAACTTTTTTCTGATAAGATAATCGGTAATTTCATTGCAAAACTTACTATCTAATCATTCTTTTTTTGAAAACTGGCAATTCTGCAAAATTCTCTTTTTTCAACTTTTTCTAGAATTTTCTCTTCTTTCCCACAGGTTCTTTGATTTTTTGGCGCTTTTTGTCTCTCGAAGGCAACAAGTTATTTACAAGTAGCACTTTTCCGTTTGGCATGGGAAAATGAGCTTGTGGACCCGTGAGAACCTTCTAGACACCTGAAAATGTCTCAAGCAAAAAGAAAAAAGGAATTGGCACCTGAGGGGGTCGAACCCGCGGGAGCTCTAGATTCAAAAGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTG</canonical>
            <polymorphic>CCCAGTTTTTTGTAGTTTCAAAAGCTAAAAAATAGTTTGAAAGAGAGTTTTGACCGTTTTCTGATCTTATCTATCCCATTTTCCAGAATTAAACTTTTTTCTGATAAGATAATCGGTAATTTCATTGCAAAACTTACTATCTAATCATTCTTTTTTTGAAAACTGGCAATTCTGCAAAATTCTCTTTTTTCAACTTTTTCTAGAATTTTCTCTTCTTTCCCACAGGTTCTTTGATTTTTTGGCGCTTTTTGTCTCTCGAAGGCAACAAGTTATTTACAAGTAGCACTTTTCCGTTTGGCATGGGAAAATGAGCTTGTGGACCCGTGAGAACCTTCTAGACACCTGAAAATGTCTCAAGCAAAAAGAAAAAAGGAATTGGCACCTGAGGGGGTCGAACCCGCGGGAGCTCTAGATTCAAAAGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGKGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>222 145 108 83 63 63 62 46 40 33 30 20 16 15 15 13 8 8 7 3 0</canonical_bands>
                <polymorphic_bands>222 145 108 83 63 63 62 46 43 40 33 20 16 15 15 8 8 7 3 0</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACAATGAGGAAGAAGTGGT</pcr_primer_p1>
		<pcr_primer_p2>GGTCATTTTCTCTCAAATAAACA</pcr_primer_p2>
		<pcr_amplicon_size>214</pcr_amplicon_size>
		<canonical_amplicon>CACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACC</canonical_amplicon>
		<polymorphic_amplicon>CACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGKGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb31999</snp_id>
        <super_contig>c006700934.Contig1</super_contig>
        <contig_pos>67106</contig_pos>
        <strand>+</strand>
        <context>CGAGTRGGTG[A/T]AATTTAAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTG</left_flank>
        <right_flank>AATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAAAGAGAGTTTTGACCGTTTTCTGATCTTATCTATCCCATTTTCCAGAATTAAACTTTTTTCTGATAAGATAATCGGTAATTTCATTGCAAAACTTACTATCTAATCATTCTTTTTTTGAAAACTGGCAATTCTGCAAAATTCTCTTTTTTCAACTTTTTCTAGAATTTTCTCTTCTTTCCCACAGGTTCTTTGATTTTTTGGCGCTTTTTGTCTCTCGAAGGCAACAAGTTATTTACAAGTAGCACTTTTCCGTTTGGCATGGGAAAATGAGCTTGTGGACCCGTGAGAACCTTCTAGACACCTGAAAATGTCTCAAGCAAAAAGAAAAAAGGAATTGGCACCTGAGGGGGTCGAACCCGCGGGAGCTCTAGATTCAAAAGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCACCGCTTTTTTCTCC</canonical>
            <polymorphic>TTTGAAAGAGAGTTTTGACCGTTTTCTGATCTTATCTATCCCATTTTCCAGAATTAAACTTTTTTCTGATAAGATAATCGGTAATTTCATTGCAAAACTTACTATCTAATCATTCTTTTTTTGAAAACTGGCAATTCTGCAAAATTCTCTTTTTTCAACTTTTTCTAGAATTTTCTCTTCTTTCCCACAGGTTCTTTGATTTTTTGGCGCTTTTTGTCTCTCGAAGGCAACAAGTTATTTACAAGTAGCACTTTTCCGTTTGGCATGGGAAAATGAGCTTGTGGACCCGTGAGAACCTTCTAGACACCTGAAAATGTCTCAAGCAAAAAGAAAAAAGGAATTGGCACCTGAGGGGGTCGAACCCGCGGGAGCTCTAGATTCAAAAGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGWAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCACCGCTTTTTTCTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>332 244 232 142 26 14 10</canonical_bands>
                <polymorphic_bands>342 244 232 142 26 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACAATGAGGAAGAAGTGGT</pcr_primer_p1>
		<pcr_primer_p2>GGTCATTTTCTCTCAAATAAACA</pcr_primer_p2>
		<pcr_amplicon_size>214</pcr_amplicon_size>
		<canonical_amplicon>CACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACC</canonical_amplicon>
		<polymorphic_amplicon>CACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGWAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32000</snp_id>
        <super_contig>c006700934.Contig1</super_contig>
        <contig_pos>67130</contig_pos>
        <strand>+</strand>
        <context>TTTTTAAAAA[A/T]TGAAATCCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAA</left_flank>
        <right_flank>TGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGATCTTATCTATCCCATTTTCCAGAATTAAACTTTTTTCTGATAAGATAATCGGTAATTTCATTGCAAAACTTACTATCTAATCATTCTTTTTTTGAAAACTGGCAATTCTGCAAAATTCTCTTTTTTCAACTTTTTCTAGAATTTTCTCTTCTTTCCCACAGGTTCTTTGATTTTTTGGCGCTTTTTGTCTCTCGAAGGCAACAAGTTATTTACAAGTAGCACTTTTCCGTTTGGCATGGGAAAATGAGCTTGTGGACCCGTGAGAACCTTCTAGACACCTGAAAATGTCTCAAGCAAAAAGAAAAAAGGAATTGGCACCTGAGGGGGTCGAACCCGCGGGAGCTCTAGATTCAAAAGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCACCGCTTTTTTCTCCGAAAAAAGAAGAGTATTGTTACAA</canonical>
            <polymorphic>TCTGATCTTATCTATCCCATTTTCCAGAATTAAACTTTTTTCTGATAAGATAATCGGTAATTTCATTGCAAAACTTACTATCTAATCATTCTTTTTTTGAAAACTGGCAATTCTGCAAAATTCTCTTTTTTCAACTTTTTCTAGAATTTTCTCTTCTTTCCCACAGGTTCTTTGATTTTTTGGCGCTTTTTGTCTCTCGAAGGCAACAAGTTATTTACAAGTAGCACTTTTCCGTTTGGCATGGGAAAATGAGCTTGTGGACCCGTGAGAACCTTCTAGACACCTGAAAATGTCTCAAGCAAAAAGAAAAAAGGAATTGGCACCTGAGGGGGTCGAACCCGCGGGAGCTCTAGATTCAAAAGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAWTGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCACCGCTTTTTTCTCCGAAAAAAGAAGAGTATTGTTACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAATGAGGAAGAAGTGGT</pcr_primer_p1>
		<pcr_primer_p2>GGTCATTTTCTCTCAAATAAACA</pcr_primer_p2>
		<pcr_amplicon_size>214</pcr_amplicon_size>
		<canonical_amplicon>CACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACC</canonical_amplicon>
		<polymorphic_amplicon>CACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAWTGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32001</snp_id>
        <super_contig>c006700934.Contig1</super_contig>
        <contig_pos>67154</contig_pos>
        <strand>+</strand>
        <context>TTTTTAATTT[A/T]GGTCCTGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTT</left_flank>
        <right_flank>GGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAATTAAACTTTTTTCTGATAAGATAATCGGTAATTTCATTGCAAAACTTACTATCTAATCATTCTTTTTTTGAAAACTGGCAATTCTGCAAAATTCTCTTTTTTCAACTTTTTCTAGAATTTTCTCTTCTTTCCCACAGGTTCTTTGATTTTTTGGCGCTTTTTGTCTCTCGAAGGCAACAAGTTATTTACAAGTAGCACTTTTCCGTTTGGCATGGGAAAATGAGCTTGTGGACCCGTGAGAACCTTCTAGACACCTGAAAATGTCTCAAGCAAAAAGAAAAAAGGAATTGGCACCTGAGGGGGTCGAACCCGCGGGAGCTCTAGATTCAAAAGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCACCGCTTTTTTCTCCGAAAAAAGAAGAGTATTGTTACAAAATCAGAACGTCATCATATTCGAA</canonical>
            <polymorphic>CAGAATTAAACTTTTTTCTGATAAGATAATCGGTAATTTCATTGCAAAACTTACTATCTAATCATTCTTTTTTTGAAAACTGGCAATTCTGCAAAATTCTCTTTTTTCAACTTTTTCTAGAATTTTCTCTTCTTTCCCACAGGTTCTTTGATTTTTTGGCGCTTTTTGTCTCTCGAAGGCAACAAGTTATTTACAAGTAGCACTTTTCCGTTTGGCATGGGAAAATGAGCTTGTGGACCCGTGAGAACCTTCTAGACACCTGAAAATGTCTCAAGCAAAAAGAAAAAAGGAATTGGCACCTGAGGGGGTCGAACCCGCGGGAGCTCTAGATTCAAAAGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTWGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCACCGCTTTTTTCTCCGAAAAAAGAAGAGTATTGTTACAAAATCAGAACGTCATCATATTCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAATGAGGAAGAAGTGGT</pcr_primer_p1>
		<pcr_primer_p2>GGTCATTTTCTCTCAAATAAACA</pcr_primer_p2>
		<pcr_amplicon_size>214</pcr_amplicon_size>
		<canonical_amplicon>CACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACC</canonical_amplicon>
		<polymorphic_amplicon>CACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTWGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32002</snp_id>
        <super_contig>c006700934.Contig1</super_contig>
        <contig_pos>67183</contig_pos>
        <strand>+</strand>
        <context>TAAARGCGTT[C/T]YYYCCCCCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTT</left_flank>
        <right_flank>CCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGTAATTTCATTGCAAAACTTACTATCTAATCATTCTTTTTTTGAAAACTGGCAATTCTGCAAAATTCTCTTTTTTCAACTTTTTCTAGAATTTTCTCTTCTTTCCCACAGGTTCTTTGATTTTTTGGCGCTTTTTGTCTCTCGAAGGCAACAAGTTATTTACAAGTAGCACTTTTCCGTTTGGCATGGGAAAATGAGCTTGTGGACCCGTGAGAACCTTCTAGACACCTGAAAATGTCTCAAGCAAAAAGAAAAAAGGAATTGGCACCTGAGGGGGTCGAACCCGCGGGAGCTCTAGATTCAAAAGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCACCGCTTTTTTCTCCGAAAAAAGAAGAGTATTGTTACAAAATCAGAACGTCATCATATTCGAAACATCCAAATTGCAGAGATCAAAATAGGA</canonical>
            <polymorphic>TCGGTAATTTCATTGCAAAACTTACTATCTAATCATTCTTTTTTTGAAAACTGGCAATTCTGCAAAATTCTCTTTTTTCAACTTTTTCTAGAATTTTCTCTTCTTTCCCACAGGTTCTTTGATTTTTTGGCGCTTTTTGTCTCTCGAAGGCAACAAGTTATTTACAAGTAGCACTTTTCCGTTTGGCATGGGAAAATGAGCTTGTGGACCCGTGAGAACCTTCTAGACACCTGAAAATGTCTCAAGCAAAAAGAAAAAAGGAATTGGCACCTGAGGGGGTCGAACCCGCGGGAGCTCTAGATTCAAAAGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTYCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCACCGCTTTTTTCTCCGAAAAAAGAAGAGTATTGTTACAAAATCAGAACGTCATCATATTCGAAACATCCAAATTGCAGAGATCAAAATAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAATGAGGAAGAAGTGGT</pcr_primer_p1>
		<pcr_primer_p2>GAACAGATGTTTTCTCAAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>CACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTC</canonical_amplicon>
		<polymorphic_amplicon>CACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTYCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32003</snp_id>
        <super_contig>c006700934.Contig1</super_contig>
        <contig_pos>67490</contig_pos>
        <strand>+</strand>
        <context>TATATTTTTT[C/T]CCATATATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTT</left_flank>
        <right_flank>CCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCACCGCTTTTTTCTCCGAAAAAAGAAGAGTATTGTTACAAAATCAGAACGTCATCATATTCGAAACATCCAAATTGCAGAGATCAAAATAGGAAAAAGAAAAAAAAACGGAGTTAGAGCTAGTGGGGACTGAACCCCTGGCCTTCAAAATGATCATGAGCGCGTTAGCCGCTACACCACACAGGCGACAGGAGGGAAGGGAGTGGAAGGCGTATAGGAGAGGGCGCCTTTCCGCGAGTCCACGAGGGAGGAGGAAGGGAAAAATGAAAAATTGAATTTTTCCGAAAAATCAAAATTTTCAATTTTTTCAAAAAACCCGCTCAAAGCCAATCTATTAAATTAATCCAAGAATGTAATATATACGTCCCCTCTTCTAGAGACAGTAATCCATCATATTGGCG</canonical>
            <polymorphic>AGCGGGAGCGTTAGCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTYCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCACCGCTTTTTTCTCCGAAAAAAGAAGAGTATTGTTACAAAATCAGAACGTCATCATATTCGAAACATCCAAATTGCAGAGATCAAAATAGGAAAAAGAAAAAAAAACGGAGTTAGAGCTAGTGGGGACTGAACCCCTGGCCTTCAAAATGATCATGAGCGCGTTAGCCGCTACACCACACAGGCGACAGGAGGGAAGGGAGTGGAAGGCGTATAGGAGAGGGCGCCTTTCCGCGAGTCCACGAGGGAGGAGGAAGGGAAAAATGAAAAATTGAATTTTTCCGAAAAATCAAAATTTTCAATTTTTTCAAAAAACCCGCTCAAAGCCAATCTATTAAATTAATCCAAGAATGTAATATATACGTCCCCTCTTCTAGAGACAGTAATCCATCATATTGGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCAATGGTTCTTTAGGATTACT</pcr_primer_p1>
		<pcr_primer_p2>TGCACTTTTTCCATCTCTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCA</canonical_amplicon>
		<polymorphic_amplicon>AGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTYCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32004</snp_id>
        <super_contig>c006700934.Contig1</super_contig>
        <contig_pos>67503</contig_pos>
        <strand>+</strand>
        <context>ATATATTTTC[A/T]CTGCAAAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTC</left_flank>
        <right_flank>CTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCACCGCTTTTTTCTCCGAAAAAAGAAGAGTATTGTTACAAAATCAGAACGTCATCATATTCGAAACATCCAAATTGCAGAGATCAAAATAGGAAAAAGAAAAAAAAACGGAGTTAGAGCTAGTGGGGACTGAACCCCTGGCCTTCAAAATGATCATGAGCGCGTTAGCCGCTACACCACACAGGCGACAGGAGGGAAGGGAGTGGAAGGCGTATAGGAGAGGGCGCCTTTCCGCGAGTCCACGAGGGAGGAGGAAGGGAAAAATGAAAAATTGAATTTTTCCGAAAAATCAAAATTTTCAATTTTTTCAAAAAACCCGCTCAAAGCCAATCTATTAAATTAATCCAAGAATGTAATATATACGTCCCCTCTTCTAGAGACAGTAATCCATCATATTGGCGTTTTTCAGGTAGT</canonical>
            <polymorphic>GCCGTTCGGCCACGCGCGCACAATGAGGAAGAAGTGGTGGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCWCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCACCGCTTTTTTCTCCGAAAAAAGAAGAGTATTGTTACAAAATCAGAACGTCATCATATTCGAAACATCCAAATTGCAGAGATCAAAATAGGAAAAAGAAAAAAAAACGGAGTTAGAGCTAGTGGGGACTGAACCCCTGGCCTTCAAAATGATCATGAGCGCGTTAGCCGCTACACCACACAGGCGACAGGAGGGAAGGGAGTGGAAGGCGTATAGGAGAGGGCGCCTTTCCGCGAGTCCACGAGGGAGGAGGAAGGGAAAAATGAAAAATTGAATTTTTCCGAAAAATCAAAATTTTCAATTTTTTCAAAAAACCCGCTCAAAGCCAATCTATTAAATTAATCCAAGAATGTAATATATACGTCCCCTCTTCTAGAGACAGTAATCCATCATATTGGCGTTTTTCAGGTAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCAATGGTTCTTTAGGATTACT</pcr_primer_p1>
		<pcr_primer_p2>TGCACTTTTTCCATCTCTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCA</canonical_amplicon>
		<polymorphic_amplicon>AGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCWCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32005</snp_id>
        <super_contig>c006700934.Contig1</super_contig>
        <contig_pos>67541</contig_pos>
        <strand>+</strand>
        <context>TTTCCTCCTT[C/T]TTTCAACGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTT</left_flank>
        <right_flank>TTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCACCGCTTTTTTCTCCGAAAAAAGAAGAGTATTGTTACAAAATCAGAACGTCATCATATTCGAAACATCCAAATTGCAGAGATCAAAATAGGAAAAAGAAAAAAAAACGGAGTTAGAGCTAGTGGGGACTGAACCCCTGGCCTTCAAAATGATCATGAGCGCGTTAGCCGCTACACCACACAGGCGACAGGAGGGAAGGGAGTGGAAGGCGTATAGGAGAGGGCGCCTTTCCGCGAGTCCACGAGGGAGGAGGAAGGGAAAAATGAAAAATTGAATTTTTCCGAAAAATCAAAATTTTCAATTTTTTCAAAAAACCCGCTCAAAGCCAATCTATTAAATTAATCCAAGAATGTAATATATACGTCCCCTCTTCTAGAGACAGTAATCCATCATATTGGCGTTTTTCAGGTAGTGTCATCTCTCTCTCTTTTTGGCCTTGAATCGTCTTCTC</canonical>
            <polymorphic>GGATGGCGTATAAGAAGGAGCGCGGAACGTGGAGCGGAGGGGTGCGGGAGGAGGCGAGTAGGTGGAATTTAAGAAAATTTTTTAAAAAATGAAATCCGATTTTTTTTAATTTTGGTCCTGAAATTGCGTTTTAAAAGCGTTCCCCCCCCCCATTTTTTCGTTTCCCGATTTTGTTTATTTGAGAGAAAATGACCGCGAAAATTGAAGTGTTGGGTGACTGGCGTCCTTGAGAAAACATCTGTTCATTTCATTTTTCCTCATTTTTCAAATATATTGTGATGAGCAATGGTTCTTTAGGATTACTGTAAATTTTGCAGTTCGAATTCAATGAACCCATTTTTTATTTTGATCTCTCTGGGGAAATTGAGAAAAAATCGGGAAATGTGTCCCCCGAGTTTGCACTTTTGGGGTTTTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTYTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCACCGCTTTTTTCTCCGAAAAAAGAAGAGTATTGTTACAAAATCAGAACGTCATCATATTCGAAACATCCAAATTGCAGAGATCAAAATAGGAAAAAGAAAAAAAAACGGAGTTAGAGCTAGTGGGGACTGAACCCCTGGCCTTCAAAATGATCATGAGCGCGTTAGCCGCTACACCACACAGGCGACAGGAGGGAAGGGAGTGGAAGGCGTATAGGAGAGGGCGCCTTTCCGCGAGTCCACGAGGGAGGAGGAAGGGAAAAATGAAAAATTGAATTTTTCCGAAAAATCAAAATTTTCAATTTTTTCAAAAAACCCGCTCAAAGCCAATCTATTAAATTAATCCAAGAATGTAATATATACGTCCCCTCTTCTAGAGACAGTAATCCATCATATTGGCGTTTTTCAGGTAGTGTCATCTCTCTCTCTTTTTGGCCTTGAATCGTCTTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTCTGTCTCTTTTTCTCTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTTTTTCCTATTTTGATCTC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTTTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCACCGCTTTTTTCTCCGAAAAAAGAAGAGTATTGTTACAAAATCAGAACGTCATCATATTCGAAACATCCAAATTGCAGAGATCAAAATAGGAAAAAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTCTGTCTCTTTTTCTCTCTATATATTTTTTTCCATATATTTTCTCTGCAAAATAGAGACATTGGTGTACTTTTTCCTCCTTYTTTCAACGCTATAGAGAGATGGAAAAAGTGCAGGCAAACTAATCCCCGCCACCGCTTTTTTCTCCGAAAAAAGAAGAGTATTGTTACAAAATCAGAACGTCATCATATTCGAAACATCCAAATTGCAGAGATCAAAATAGGAAAAAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32006</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>40226</contig_pos>
        <strand>+</strand>
        <context>AAAATTATAT[C/T]GAATGGTGGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATAT</left_flank>
        <right_flank>GAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGACAGGTGTTTTTTAAGACAGGTCGATGCTAATCTCTAAAACACTATCTCAATTTTTCTTCCACCCATAATTACAGTCCTCTCTGGTCCATTACACAATTCCCTCTCAATACAGCTGTCTCCTCCAGAATTGCACAACACCCGGACCATTTTGTGTGCACACATTTGGATTTTTAAGAAGAAACGGAAGAAGGAGCAAACACGTGGCAAAGAATACGGGGACGGGAGGTAATAGATACATTTTGGGACATTTGGGAGGGAATTGACACTAAGGTGTTACCTAATATCTGATCCTAATAGGAGGCGGAGGAGGAGGCTAATTGGTGTCTGGGGATGTTTGAGAAGAGATCTGGAGCTGAGCAATGGGGGAAAACGAAAATCAGGGACCAAAAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGT</canonical>
            <polymorphic>GGGACAGGTGTTTTTTAAGACAGGTCGATGCTAATCTCTAAAACACTATCTCAATTTTTCTTCCACCCATAATTACAGTCCTCTCTGGTCCATTACACAATTCCCTCTCAATACAGCTGTCTCCTCCAGAATTGCACAACACCCGGACCATTTTGTGTGCACACATTTGGATTTTTAAGAAGAAACGGAAGAAGGAGCAAACACGTGGCAAAGAATACGGGGACGGGAGGTAATAGATACATTTTGGGACATTTGGGAGGGAATTGACACTAAGGTGTTACCTAATATCTGATCCTAATAGGAGGCGGAGGAGGAGGCTAATTGGTGTCTGGGGATGTTTGAGAAGAGATCTGGAGCTGAGCAATGGGGGAAAACGAAAATCAGGGACCAAAAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATYGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>474 441 59 26</canonical_bands>
                <polymorphic_bands>533 441 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCCACGAAAGGTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAGCTATCGTTTGGTATAA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>AATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATYGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32007</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>40272</contig_pos>
        <strand>+</strand>
        <context>AATCCAGAAT[C/T]TTGGAGATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAAT</left_flank>
        <right_flank>TTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCTCAATTTTTCTTCCACCCATAATTACAGTCCTCTCTGGTCCATTACACAATTCCCTCTCAATACAGCTGTCTCCTCCAGAATTGCACAACACCCGGACCATTTTGTGTGCACACATTTGGATTTTTAAGAAGAAACGGAAGAAGGAGCAAACACGTGGCAAAGAATACGGGGACGGGAGGTAATAGATACATTTTGGGACATTTGGGAGGGAATTGACACTAAGGTGTTACCTAATATCTGATCCTAATAGGAGGCGGAGGAGGAGGCTAATTGGTGTCTGGGGATGTTTGAGAAGAGATCTGGAGCTGAGCAATGGGGGAAAACGAAAATCAGGGACCAAAAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATA</canonical>
            <polymorphic>TATCTCAATTTTTCTTCCACCCATAATTACAGTCCTCTCTGGTCCATTACACAATTCCCTCTCAATACAGCTGTCTCCTCCAGAATTGCACAACACCCGGACCATTTTGTGTGCACACATTTGGATTTTTAAGAAGAAACGGAAGAAGGAGCAAACACGTGGCAAAGAATACGGGGACGGGAGGTAATAGATACATTTTGGGACATTTGGGAGGGAATTGACACTAAGGTGTTACCTAATATCTGATCCTAATAGGAGGCGGAGGAGGAGGCTAATTGGTGTCTGGGGATGTTTGAGAAGAGATCTGGAGCTGAGCAATGGGGGAAAACGAAAATCAGGGACCAAAAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATYTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>504 380 116</canonical_bands>
                <polymorphic_bands>620 380</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>504 380 116</canonical_bands>
                <polymorphic_bands>620 380</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCATTTTCGGAGTTTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAGCTATCGTTTGGTATAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATYTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32008</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>40285</contig_pos>
        <strand>+</strand>
        <context>GGAGATTTCT[A/C]GAAACTCCCG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCT</left_flank>
        <right_flank>GAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCCACCCATAATTACAGTCCTCTCTGGTCCATTACACAATTCCCTCTCAATACAGCTGTCTCCTCCAGAATTGCACAACACCCGGACCATTTTGTGTGCACACATTTGGATTTTTAAGAAGAAACGGAAGAAGGAGCAAACACGTGGCAAAGAATACGGGGACGGGAGGTAATAGATACATTTTGGGACATTTGGGAGGGAATTGACACTAAGGTGTTACCTAATATCTGATCCTAATAGGAGGCGGAGGAGGAGGCTAATTGGTGTCTGGGGATGTTTGAGAAGAGATCTGGAGCTGAGCAATGGGGGAAAACGAAAATCAGGGACCAAAAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAA</canonical>
            <polymorphic>CTTCCACCCATAATTACAGTCCTCTCTGGTCCATTACACAATTCCCTCTCAATACAGCTGTCTCCTCCAGAATTGCACAACACCCGGACCATTTTGTGTGCACACATTTGGATTTTTAAGAAGAAACGGAAGAAGGAGCAAACACGTGGCAAAGAATACGGGGACGGGAGGTAATAGATACATTTTGGGACATTTGGGAGGGAATTGACACTAAGGTGTTACCTAATATCTGATCCTAATAGGAGGCGGAGGAGGAGGCTAATTGGTGTCTGGGGATGTTTGAGAAGAGATCTGGAGCTGAGCAATGGGGGAAAACGAAAATCAGGGACCAAAAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTMGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 441 59</canonical_bands>
                <polymorphic_bands>559 441</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCATTTTCGGAGTTTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAGCTATCGTTTGGTATAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTMGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32009</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>40319</contig_pos>
        <strand>+</strand>
        <context>ATTTTTGATT[A/T]CGGAACTTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATT</left_flank>
        <right_flank>CGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACACAATTCCCTCTCAATACAGCTGTCTCCTCCAGAATTGCACAACACCCGGACCATTTTGTGTGCACACATTTGGATTTTTAAGAAGAAACGGAAGAAGGAGCAAACACGTGGCAAAGAATACGGGGACGGGAGGTAATAGATACATTTTGGGACATTTGGGAGGGAATTGACACTAAGGTGTTACCTAATATCTGATCCTAATAGGAGGCGGAGGAGGAGGCTAATTGGTGTCTGGGGATGTTTGAGAAGAGATCTGGAGCTGAGCAATGGGGGAAAACGAAAATCAGGGACCAAAAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTT</canonical>
            <polymorphic>TACACAATTCCCTCTCAATACAGCTGTCTCCTCCAGAATTGCACAACACCCGGACCATTTTGTGTGCACACATTTGGATTTTTAAGAAGAAACGGAAGAAGGAGCAAACACGTGGCAAAGAATACGGGGACGGGAGGTAATAGATACATTTTGGGACATTTGGGAGGGAATTGACACTAAGGTGTTACCTAATATCTGATCCTAATAGGAGGCGGAGGAGGAGGCTAATTGGTGTCTGGGGATGTTTGAGAAGAGATCTGGAGCTGAGCAATGGGGGAAAACGAAAATCAGGGACCAAAAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTWCGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCATTTTCGGAGTTTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAGCTATCGTTTGGTATAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTWCGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32010</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>40388</contig_pos>
        <strand>+</strand>
        <context>tcaaaCACTT[G/T]CTACRTTGCG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTT</left_flank>
        <right_flank>CTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATTTGGATTTTTAAGAAGAAACGGAAGAAGGAGCAAACACGTGGCAAAGAATACGGGGACGGGAGGTAATAGATACATTTTGGGACATTTGGGAGGGAATTGACACTAAGGTGTTACCTAATATCTGATCCTAATAGGAGGCGGAGGAGGAGGCTAATTGGTGTCTGGGGATGTTTGAGAAGAGATCTGGAGCTGAGCAATGGGGGAAAACGAAAATCAGGGACCAAAAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTTTAGTCTTTAAAGTCAAAATTGGTACTGCTTAGTAGGCGCAAAATCAGATTTTGCTACTGCCTGGCAGTA</canonical>
            <polymorphic>ACATTTGGATTTTTAAGAAGAAACGGAAGAAGGAGCAAACACGTGGCAAAGAATACGGGGACGGGAGGTAATAGATACATTTTGGGACATTTGGGAGGGAATTGACACTAAGGTGTTACCTAATATCTGATCCTAATAGGAGGCGGAGGAGGAGGCTAATTGGTGTCTGGGGATGTTTGAGAAGAGATCTGGAGCTGAGCAATGGGGGAAAACGAAAATCAGGGACCAAAAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTKCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTTTAGTCTTTAAAGTCAAAATTGGTACTGCTTAGTAGGCGCAAAATCAGATTTTGCTACTGCCTGGCAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAATTACCGCCAAAATTA</pcr_primer_p1>
		<pcr_primer_p2>TTATATCAAATCAAAGCCCTGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAA</canonical_amplicon>
		<polymorphic_amplicon>CTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTKCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32011</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>40393</contig_pos>
        <strand>+</strand>
        <context>CACTTKCTAC[A/G]TTGCGGATTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTAC</left_flank>
        <right_flank>TTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGATTTTTAAGAAGAAACGGAAGAAGGAGCAAACACGTGGCAAAGAATACGGGGACGGGAGGTAATAGATACATTTTGGGACATTTGGGAGGGAATTGACACTAAGGTGTTACCTAATATCTGATCCTAATAGGAGGCGGAGGAGGAGGCTAATTGGTGTCTGGGGATGTTTGAGAAGAGATCTGGAGCTGAGCAATGGGGGAAAACGAAAATCAGGGACCAAAAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTTTAGTCTTTAAAGTCAAAATTGGTACTGCTTAGTAGGCGCAAAATCAGATTTTGCTACTGCCTGGCAGTAGCAAA</canonical>
            <polymorphic>TGGATTTTTAAGAAGAAACGGAAGAAGGAGCAAACACGTGGCAAAGAATACGGGGACGGGAGGTAATAGATACATTTTGGGACATTTGGGAGGGAATTGACACTAAGGTGTTACCTAATATCTGATCCTAATAGGAGGCGGAGGAGGAGGCTAATTGGTGTCTGGGGATGTTTGAGAAGAGATCTGGAGCTGAGCAATGGGGGAAAACGAAAATCAGGGACCAAAAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACRTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTTTAGTCTTTAAAGTCAAAATTGGTACTGCTTAGTAGGCGCAAAATCAGATTTTGCTACTGCCTGGCAGTAGCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>502 462 36</canonical_bands>
                <polymorphic_bands>964 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAATTACCGCCAAAATTA</pcr_primer_p1>
		<pcr_primer_p2>TTATATCAAATCAAAGCCCTGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAA</canonical_amplicon>
		<polymorphic_amplicon>CTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACRTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32012</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>40458</contig_pos>
        <strand>+</strand>
        <context>AAATAAGATT[A/T]AAAATTCATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATT</left_flank>
        <right_flank>AAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGATACATTTTGGGACATTTGGGAGGGAATTGACACTAAGGTGTTACCTAATATCTGATCCTAATAGGAGGCGGAGGAGGAGGCTAATTGGTGTCTGGGGATGTTTGAGAAGAGATCTGGAGCTGAGCAATGGGGGAAAACGAAAATCAGGGACCAAAAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTTTAGTCTTTAAAGTCAAAATTGGTACTGCTTAGTAGGCGCAAAATCAGATTTTGCTACTGCCTGGCAGTAGCAAAATTCAATTTTACACCTGCTAGGCAGTACCAAATTCTCTGTTTTCGTAACTTTAAAGGCGCATAAC</canonical>
            <polymorphic>ATAGATACATTTTGGGACATTTGGGAGGGAATTGACACTAAGGTGTTACCTAATATCTGATCCTAATAGGAGGCGGAGGAGGAGGCTAATTGGTGTCTGGGGATGTTTGAGAAGAGATCTGGAGCTGAGCAATGGGGGAAAACGAAAATCAGGGACCAAAAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTWAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTTTAGTCTTTAAAGTCAAAATTGGTACTGCTTAGTAGGCGCAAAATCAGATTTTGCTACTGCCTGGCAGTAGCAAAATTCAATTTTACACCTGCTAGGCAGTACCAAATTCTCTGTTTTCGTAACTTTAAAGGCGCATAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>230 170 118 112 98 79 75 40 22 21 21 14</canonical_bands>
                <polymorphic_bands>230 210 170 118 79 75 40 22 21 21 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGAACTTTGAAAAACAGATT</pcr_primer_p1>
		<pcr_primer_p2>AAATCAAAAGTTATGACTATCTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>215</pcr_amplicon_size>
		<canonical_amplicon>CGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTT</canonical_amplicon>
		<polymorphic_amplicon>CGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTWAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32013</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>40500</contig_pos>
        <strand>+</strand>
        <context>TCTCAAAAGA[C/G]TTCAACTACT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGA</left_flank>
        <right_flank>TTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTTACCTAATATCTGATCCTAATAGGAGGCGGAGGAGGAGGCTAATTGGTGTCTGGGGATGTTTGAGAAGAGATCTGGAGCTGAGCAATGGGGGAAAACGAAAATCAGGGACCAAAAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTTTAGTCTTTAAAGTCAAAATTGGTACTGCTTAGTAGGCGCAAAATCAGATTTTGCTACTGCCTGGCAGTAGCAAAATTCAATTTTACACCTGCTAGGCAGTACCAAATTCTCTGTTTTCGTAACTTTAAAGGCGCATAACTTTTTTCGAACATATGCTACGTTGACGGTTTTTACACCAAAC</canonical>
            <polymorphic>GTGTTACCTAATATCTGATCCTAATAGGAGGCGGAGGAGGAGGCTAATTGGTGTCTGGGGATGTTTGAGAAGAGATCTGGAGCTGAGCAATGGGGGAAAACGAAAATCAGGGACCAAAAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGASTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTTTAGTCTTTAAAGTCAAAATTGGTACTGCTTAGTAGGCGCAAAATCAGATTTTGCTACTGCCTGGCAGTAGCAAAATTCAATTTTACACCTGCTAGGCAGTACCAAATTCTCTGTTTTCGTAACTTTAAAGGCGCATAACTTTTTTCGAACATATGCTACGTTGACGGTTTTTACACCAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAGGGCTTTGATTTGATA</pcr_primer_p1>
		<pcr_primer_p2>TAGTACCAATTTTGAGAGGTGTC</pcr_primer_p2>
		<pcr_amplicon_size>278</pcr_amplicon_size>
		<canonical_amplicon>AACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTA</canonical_amplicon>
		<polymorphic_amplicon>AACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGASTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32014</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>40541</contig_pos>
        <strand>+</strand>
        <context>ATTTTTGGAT[A/G]TTTCAAACCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGAT</left_flank>
        <right_flank>TTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTAATTGGTGTCTGGGGATGTTTGAGAAGAGATCTGGAGCTGAGCAATGGGGGAAAACGAAAATCAGGGACCAAAAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTTTAGTCTTTAAAGTCAAAATTGGTACTGCTTAGTAGGCGCAAAATCAGATTTTGCTACTGCCTGGCAGTAGCAAAATTCAATTTTACACCTGCTAGGCAGTACCAAATTCTCTGTTTTCGTAACTTTAAAGGCGCATAACTTTTTTCGAACATATGCTACGTTGACGGTTTTTACACCAAACGATAGCTGAGAAACAGGGCTATAATTTGCACTAAAATTTGT</canonical>
            <polymorphic>GGCTAATTGGTGTCTGGGGATGTTTGAGAAGAGATCTGGAGCTGAGCAATGGGGGAAAACGAAAATCAGGGACCAAAAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATRTTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTTTAGTCTTTAAAGTCAAAATTGGTACTGCTTAGTAGGCGCAAAATCAGATTTTGCTACTGCCTGGCAGTAGCAAAATTCAATTTTACACCTGCTAGGCAGTACCAAATTCTCTGTTTTCGTAACTTTAAAGGCGCATAACTTTTTTCGAACATATGCTACGTTGACGGTTTTTACACCAAACGATAGCTGAGAAACAGGGCTATAATTTGCACTAAAATTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGAAAATTGTCATCTCAAAAG</pcr_primer_p1>
		<pcr_primer_p2>ACGAACAGTGAGGATTTACTAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGT</canonical_amplicon>
		<polymorphic_amplicon>ATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATRTTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32015</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>40600</contig_pos>
        <strand>+</strand>
        <context>TTAATATGAA[C/T]WSWAACAWWW</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAA</left_flank>
        <right_flank>TCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAAAATCAGGGACCAAAAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTTTAGTCTTTAAAGTCAAAATTGGTACTGCTTAGTAGGCGCAAAATCAGATTTTGCTACTGCCTGGCAGTAGCAAAATTCAATTTTACACCTGCTAGGCAGTACCAAATTCTCTGTTTTCGTAACTTTAAAGGCGCATAACTTTTTTCGAACATATGCTACGTTGACGGTTTTTACACCAAACGATAGCTGAGAAACAGGGCTATAATTTGCACTAAAATTTGTAATAGAATCTTGTTAAATGATTTGCTAAAAATTGATTTTTCCTAGGTCATGCTAAATTT</canonical>
            <polymorphic>CGAAAATCAGGGACCAAAAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAAYTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTTTAGTCTTTAAAGTCAAAATTGGTACTGCTTAGTAGGCGCAAAATCAGATTTTGCTACTGCCTGGCAGTAGCAAAATTCAATTTTACACCTGCTAGGCAGTACCAAATTCTCTGTTTTCGTAACTTTAAAGGCGCATAACTTTTTTCGAACATATGCTACGTTGACGGTTTTTACACCAAACGATAGCTGAGAAACAGGGCTATAATTTGCACTAAAATTTGTAATAGAATCTTGTTAAATGATTTGCTAAAAATTGATTTTTCCTAGGTCATGCTAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGAAAATTGTCATCTCAAAAG</pcr_primer_p1>
		<pcr_primer_p2>ACGAACAGTGAGGATTTACTAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGT</canonical_amplicon>
		<polymorphic_amplicon>ATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAAYTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32016</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>40601</contig_pos>
        <strand>+</strand>
        <context>TAATATGAAY[A/T]SWAACAWWWT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAAC</left_flank>
        <right_flank>CTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAATCAGGGACCAAAAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTTTAGTCTTTAAAGTCAAAATTGGTACTGCTTAGTAGGCGCAAAATCAGATTTTGCTACTGCCTGGCAGTAGCAAAATTCAATTTTACACCTGCTAGGCAGTACCAAATTCTCTGTTTTCGTAACTTTAAAGGCGCATAACTTTTTTCGAACATATGCTACGTTGACGGTTTTTACACCAAACGATAGCTGAGAAACAGGGCTATAATTTGCACTAAAATTTGTAATAGAATCTTGTTAAATGATTTGCTAAAAATTGATTTTTCCTAGGTCATGCTAAATTTT</canonical>
            <polymorphic>GAAAATCAGGGACCAAAAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACWCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTTTAGTCTTTAAAGTCAAAATTGGTACTGCTTAGTAGGCGCAAAATCAGATTTTGCTACTGCCTGGCAGTAGCAAAATTCAATTTTACACCTGCTAGGCAGTACCAAATTCTCTGTTTTCGTAACTTTAAAGGCGCATAACTTTTTTCGAACATATGCTACGTTGACGGTTTTTACACCAAACGATAGCTGAGAAACAGGGCTATAATTTGCACTAAAATTTGTAATAGAATCTTGTTAAATGATTTGCTAAAAATTGATTTTTCCTAGGTCATGCTAAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGAAAATTGTCATCTCAAAAG</pcr_primer_p1>
		<pcr_primer_p2>ACGAACAGTGAGGATTTACTAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGT</canonical_amplicon>
		<polymorphic_amplicon>ATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACWCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32017</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>40602</contig_pos>
        <strand>+</strand>
        <context>AATATGAAYW[C/G]WAACAWWWTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACT</left_flank>
        <right_flank>TAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATCAGGGACCAAAAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTTTAGTCTTTAAAGTCAAAATTGGTACTGCTTAGTAGGCGCAAAATCAGATTTTGCTACTGCCTGGCAGTAGCAAAATTCAATTTTACACCTGCTAGGCAGTACCAAATTCTCTGTTTTCGTAACTTTAAAGGCGCATAACTTTTTTCGAACATATGCTACGTTGACGGTTTTTACACCAAACGATAGCTGAGAAACAGGGCTATAATTTGCACTAAAATTTGTAATAGAATCTTGTTAAATGATTTGCTAAAAATTGATTTTTCCTAGGTCATGCTAAATTTTG</canonical>
            <polymorphic>AAAATCAGGGACCAAAAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTSTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTTTAGTCTTTAAAGTCAAAATTGGTACTGCTTAGTAGGCGCAAAATCAGATTTTGCTACTGCCTGGCAGTAGCAAAATTCAATTTTACACCTGCTAGGCAGTACCAAATTCTCTGTTTTCGTAACTTTAAAGGCGCATAACTTTTTTCGAACATATGCTACGTTGACGGTTTTTACACCAAACGATAGCTGAGAAACAGGGCTATAATTTGCACTAAAATTTGTAATAGAATCTTGTTAAATGATTTGCTAAAAATTGATTTTTCCTAGGTCATGCTAAATTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGAAAATTGTCATCTCAAAAG</pcr_primer_p1>
		<pcr_primer_p2>ACGAACAGTGAGGATTTACTAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGT</canonical_amplicon>
		<polymorphic_amplicon>ATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTSTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32018</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>40603</contig_pos>
        <strand>+</strand>
        <context>ATATGAAYWS[A/T]AACAWWWTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTC</left_flank>
        <right_flank>AACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCAGGGACCAAAAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTTTAGTCTTTAAAGTCAAAATTGGTACTGCTTAGTAGGCGCAAAATCAGATTTTGCTACTGCCTGGCAGTAGCAAAATTCAATTTTACACCTGCTAGGCAGTACCAAATTCTCTGTTTTCGTAACTTTAAAGGCGCATAACTTTTTTCGAACATATGCTACGTTGACGGTTTTTACACCAAACGATAGCTGAGAAACAGGGCTATAATTTGCACTAAAATTTGTAATAGAATCTTGTTAAATGATTTGCTAAAAATTGATTTTTCCTAGGTCATGCTAAATTTTGT</canonical>
            <polymorphic>AAATCAGGGACCAAAAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCWAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTTTAGTCTTTAAAGTCAAAATTGGTACTGCTTAGTAGGCGCAAAATCAGATTTTGCTACTGCCTGGCAGTAGCAAAATTCAATTTTACACCTGCTAGGCAGTACCAAATTCTCTGTTTTCGTAACTTTAAAGGCGCATAACTTTTTTCGAACATATGCTACGTTGACGGTTTTTACACCAAACGATAGCTGAGAAACAGGGCTATAATTTGCACTAAAATTTGTAATAGAATCTTGTTAAATGATTTGCTAAAAATTGATTTTTCCTAGGTCATGCTAAATTTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGAAAATTGTCATCTCAAAAG</pcr_primer_p1>
		<pcr_primer_p2>ACGAACAGTGAGGATTTACTAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGT</canonical_amplicon>
		<polymorphic_amplicon>ATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCWAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32019</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>40608</contig_pos>
        <strand>+</strand>
        <context>AAYWSWAACA[A/T]WWTTAATAMG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACA</left_flank>
        <right_flank>AGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGGACCAAAAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTTTAGTCTTTAAAGTCAAAATTGGTACTGCTTAGTAGGCGCAAAATCAGATTTTGCTACTGCCTGGCAGTAGCAAAATTCAATTTTACACCTGCTAGGCAGTACCAAATTCTCTGTTTTCGTAACTTTAAAGGCGCATAACTTTTTTCGAACATATGCTACGTTGACGGTTTTTACACCAAACGATAGCTGAGAAACAGGGCTATAATTTGCACTAAAATTTGTAATAGAATCTTGTTAAATGATTTGCTAAAAATTGATTTTTCCTAGGTCATGCTAAATTTTGTGGTAT</canonical>
            <polymorphic>AGGGACCAAAAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAWAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTTTAGTCTTTAAAGTCAAAATTGGTACTGCTTAGTAGGCGCAAAATCAGATTTTGCTACTGCCTGGCAGTAGCAAAATTCAATTTTACACCTGCTAGGCAGTACCAAATTCTCTGTTTTCGTAACTTTAAAGGCGCATAACTTTTTTCGAACATATGCTACGTTGACGGTTTTTACACCAAACGATAGCTGAGAAACAGGGCTATAATTTGCACTAAAATTTGTAATAGAATCTTGTTAAATGATTTGCTAAAAATTGATTTTTCCTAGGTCATGCTAAATTTTGTGGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGAAAATTGTCATCTCAAAAG</pcr_primer_p1>
		<pcr_primer_p2>ACGAACAGTGAGGATTTACTAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGT</canonical_amplicon>
		<polymorphic_amplicon>ATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAWAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32020</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>40609</contig_pos>
        <strand>+</strand>
        <context>AYWSWAACAW[A/T]WTTAATAMGY</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAA</left_flank>
        <right_flank>GTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGACCAAAAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTTTAGTCTTTAAAGTCAAAATTGGTACTGCTTAGTAGGCGCAAAATCAGATTTTGCTACTGCCTGGCAGTAGCAAAATTCAATTTTACACCTGCTAGGCAGTACCAAATTCTCTGTTTTCGTAACTTTAAAGGCGCATAACTTTTTTCGAACATATGCTACGTTGACGGTTTTTACACCAAACGATAGCTGAGAAACAGGGCTATAATTTGCACTAAAATTTGTAATAGAATCTTGTTAAATGATTTGCTAAAAATTGATTTTTCCTAGGTCATGCTAAATTTTGTGGTATT</canonical>
            <polymorphic>GGGACCAAAAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAWGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTTTAGTCTTTAAAGTCAAAATTGGTACTGCTTAGTAGGCGCAAAATCAGATTTTGCTACTGCCTGGCAGTAGCAAAATTCAATTTTACACCTGCTAGGCAGTACCAAATTCTCTGTTTTCGTAACTTTAAAGGCGCATAACTTTTTTCGAACATATGCTACGTTGACGGTTTTTACACCAAACGATAGCTGAGAAACAGGGCTATAATTTGCACTAAAATTTGTAATAGAATCTTGTTAAATGATTTGCTAAAAATTGATTTTTCCTAGGTCATGCTAAATTTTGTGGTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGAAAATTGTCATCTCAAAAG</pcr_primer_p1>
		<pcr_primer_p2>ACGAACAGTGAGGATTTACTAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGT</canonical_amplicon>
		<polymorphic_amplicon>ATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAWGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32021</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>40610</contig_pos>
        <strand>+</strand>
        <context>YWSWAACAWW[A/T]TTAATAMGYM</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAA</left_flank>
        <right_flank>TTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGACCAAAAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTTTAGTCTTTAAAGTCAAAATTGGTACTGCTTAGTAGGCGCAAAATCAGATTTTGCTACTGCCTGGCAGTAGCAAAATTCAATTTTACACCTGCTAGGCAGTACCAAATTCTCTGTTTTCGTAACTTTAAAGGCGCATAACTTTTTTCGAACATATGCTACGTTGACGGTTTTTACACCAAACGATAGCTGAGAAACAGGGCTATAATTTGCACTAAAATTTGTAATAGAATCTTGTTAAATGATTTGCTAAAAATTGATTTTTCCTAGGTCATGCTAAATTTTGTGGTATTT</canonical>
            <polymorphic>GGACCAAAAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAWTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTTTAGTCTTTAAAGTCAAAATTGGTACTGCTTAGTAGGCGCAAAATCAGATTTTGCTACTGCCTGGCAGTAGCAAAATTCAATTTTACACCTGCTAGGCAGTACCAAATTCTCTGTTTTCGTAACTTTAAAGGCGCATAACTTTTTTCGAACATATGCTACGTTGACGGTTTTTACACCAAACGATAGCTGAGAAACAGGGCTATAATTTGCACTAAAATTTGTAATAGAATCTTGTTAAATGATTTGCTAAAAATTGATTTTTCCTAGGTCATGCTAAATTTTGTGGTATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGAAAATTGTCATCTCAAAAG</pcr_primer_p1>
		<pcr_primer_p2>ACGAACAGTGAGGATTTACTAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGT</canonical_amplicon>
		<polymorphic_amplicon>ATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAWTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32022</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>40617</contig_pos>
        <strand>+</strand>
        <context>AWWWTTAATA[A/C]GYMtkgtata</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATA</left_flank>
        <right_flank>GATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTTTAGTCTTTAAAGTCAAAATTGGTACTGCTTAGTAGGCGCAAAATCAGATTTTGCTACTGCCTGGCAGTAGCAAAATTCAATTTTACACCTGCTAGGCAGTACCAAATTCTCTGTTTTCGTAACTTTAAAGGCGCATAACTTTTTTCGAACATATGCTACGTTGACGGTTTTTACACCAAACGATAGCTGAGAAACAGGGCTATAATTTGCACTAAAATTTGTAATAGAATCTTGTTAAATGATTTGCTAAAAATTGATTTTTCCTAGGTCATGCTAAATTTTGTGGTATTTTTTGCGG</canonical>
            <polymorphic>AAAAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATAMGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTTTAGTCTTTAAAGTCAAAATTGGTACTGCTTAGTAGGCGCAAAATCAGATTTTGCTACTGCCTGGCAGTAGCAAAATTCAATTTTACACCTGCTAGGCAGTACCAAATTCTCTGTTTTCGTAACTTTAAAGGCGCATAACTTTTTTCGAACATATGCTACGTTGACGGTTTTTACACCAAACGATAGCTGAGAAACAGGGCTATAATTTGCACTAAAATTTGTAATAGAATCTTGTTAAATGATTTGCTAAAAATTGATTTTTCCTAGGTCATGCTAAATTTTGTGGTATTTTTTGCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGAAAATTGTCATCTCAAAAG</pcr_primer_p1>
		<pcr_primer_p2>ACGAACAGTGAGGATTTACTAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGT</canonical_amplicon>
		<polymorphic_amplicon>ATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATAMGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32023</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>40619</contig_pos>
        <strand>+</strand>
        <context>WWTTAATAMG[C/T]Mtkgtataaa</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATG</left_flank>
        <right_flank>TTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTTTAGTCTTTAAAGTCAAAATTGGTACTGCTTAGTAGGCGCAAAATCAGATTTTGCTACTGCCTGGCAGTAGCAAAATTCAATTTTACACCTGCTAGGCAGTACCAAATTCTCTGTTTTCGTAACTTTAAAGGCGCATAACTTTTTTCGAACATATGCTACGTTGACGGTTTTTACACCAAACGATAGCTGAGAAACAGGGCTATAATTTGCACTAAAATTTGTAATAGAATCTTGTTAAATGATTTGCTAAAAATTGATTTTTCCTAGGTCATGCTAAATTTTGTGGTATTTTTTGCGGCC</canonical>
            <polymorphic>AAAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGYTTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTTTAGTCTTTAAAGTCAAAATTGGTACTGCTTAGTAGGCGCAAAATCAGATTTTGCTACTGCCTGGCAGTAGCAAAATTCAATTTTACACCTGCTAGGCAGTACCAAATTCTCTGTTTTCGTAACTTTAAAGGCGCATAACTTTTTTCGAACATATGCTACGTTGACGGTTTTTACACCAAACGATAGCTGAGAAACAGGGCTATAATTTGCACTAAAATTTGTAATAGAATCTTGTTAAATGATTTGCTAAAAATTGATTTTTCCTAGGTCATGCTAAATTTTGTGGTATTTTTTGCGGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGAAAATTGTCATCTCAAAAG</pcr_primer_p1>
		<pcr_primer_p2>ACGAACAGTGAGGATTTACTAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGT</canonical_amplicon>
		<polymorphic_amplicon>ATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGYTTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32024</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>40620</contig_pos>
        <strand>+</strand>
        <context>WTTAATAMGY[A/C]tkgtataaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGA</left_flank>
        <right_flank>TGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTTTAGTCTTTAAAGTCAAAATTGGTACTGCTTAGTAGGCGCAAAATCAGATTTTGCTACTGCCTGGCAGTAGCAAAATTCAATTTTACACCTGCTAGGCAGTACCAAATTCTCTGTTTTCGTAACTTTAAAGGCGCATAACTTTTTTCGAACATATGCTACGTTGACGGTTTTTACACCAAACGATAGCTGAGAAACAGGGCTATAATTTGCACTAAAATTTGTAATAGAATCTTGTTAAATGATTTGCTAAAAATTGATTTTTCCTAGGTCATGCTAAATTTTGTGGTATTTTTTGCGGCCC</canonical>
            <polymorphic>AAAATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGAMTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTTTAGTCTTTAAAGTCAAAATTGGTACTGCTTAGTAGGCGCAAAATCAGATTTTGCTACTGCCTGGCAGTAGCAAAATTCAATTTTACACCTGCTAGGCAGTACCAAATTCTCTGTTTTCGTAACTTTAAAGGCGCATAACTTTTTTCGAACATATGCTACGTTGACGGTTTTTACACCAAACGATAGCTGAGAAACAGGGCTATAATTTGCACTAAAATTTGTAATAGAATCTTGTTAAATGATTTGCTAAAAATTGATTTTTCCTAGGTCATGCTAAATTTTGTGGTATTTTTTGCGGCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGAAAATTGTCATCTCAAAAG</pcr_primer_p1>
		<pcr_primer_p2>ACGAACAGTGAGGATTTACTAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGT</canonical_amplicon>
		<polymorphic_amplicon>ATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGAMTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32025</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>40622</contig_pos>
        <strand>+</strand>
        <context>TAATAMGYMt[G/T]gtataaaatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATT</left_flank>
        <right_flank>GTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTTTAGTCTTTAAAGTCAAAATTGGTACTGCTTAGTAGGCGCAAAATCAGATTTTGCTACTGCCTGGCAGTAGCAAAATTCAATTTTACACCTGCTAGGCAGTACCAAATTCTCTGTTTTCGTAACTTTAAAGGCGCATAACTTTTTTCGAACATATGCTACGTTGACGGTTTTTACACCAAACGATAGCTGAGAAACAGGGCTATAATTTGCACTAAAATTTGTAATAGAATCTTGTTAAATGATTTGCTAAAAATTGATTTTTCCTAGGTCATGCTAAATTTTGTGGTATTTTTTGCGGCCCTA</canonical>
            <polymorphic>AATATTTAAACATGAAAAAAACCACTTAGGAATCATGAAAATTTTGAAAATCCACGAAAGGTCATTTTCGGAGTTTTCTTCTGAATTACCGCCAAAATTATATCGAATGGTGGCTTGAAATTTGTGGCTATTATAAGATAATCCAGAATCTTGGAGATTTCTCGAAACTCCCGTGAAGATGTCACAATTTTTGATTACGGAACTTTGAAAAACAGATTTGATTGTGTTTGTAACTTTAAAGGCGCATAACTTTTTTCAAACACTTTCTACGTTGCGGATTGTTATACCAAACGATAGCTGAAAAACAGGGCTTTGATTTGATATAAAATAAGATTAAAAATTCATAATGAAATATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTKGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGTAACTTCAAAGGCCCATAACTTTGTTTAAACATTTGTTACATTGATATTTTGGTACAAAAATAACCGATTTAGCTAAACTTTGAACCTAGTGTTTAGTCTTTAAAGTCAAAATTGGTACTGCTTAGTAGGCGCAAAATCAGATTTTGCTACTGCCTGGCAGTAGCAAAATTCAATTTTACACCTGCTAGGCAGTACCAAATTCTCTGTTTTCGTAACTTTAAAGGCGCATAACTTTTTTCGAACATATGCTACGTTGACGGTTTTTACACCAAACGATAGCTGAGAAACAGGGCTATAATTTGCACTAAAATTTGTAATAGAATCTTGTTAAATGATTTGCTAAAAATTGATTTTTCCTAGGTCATGCTAAATTTTGTGGTATTTTTTGCGGCCCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGAAAATTGTCATCTCAAAAG</pcr_primer_p1>
		<pcr_primer_p2>ACGAACAGTGAGGATTTACTAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTGGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGT</canonical_amplicon>
		<polymorphic_amplicon>ATTGAAAATTGTCATCTCAAAAGAGTTCAACTACTGAAGATAGTCATAACTTTTGATTTTTGGATATTTCAAACCGAATTTTGAGCTCAATTTTAAAATTGGACTATAACAAAGTTAATATGAACTCTAACAAAGTTAATATGATTKGTATAAAATTCAACTGGATAGCTGTAATTTAAAAAAAAGTTATGCGCCTTTAAAGACAGACACCTCTCAAAATTGGTACTACTTAGTAAATCCTCACTGTTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32026</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>61565</contig_pos>
        <strand></strand>
        <context>AAAAAAAAAC[T/C]CACCAAATCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAATTCCTGCTCTTTTCGTATTTTAAAAATTCAAAAATTCAAAAAAAAAC</left_flank>
        <right_flank>CACCAAATCTTCCACATACGGCATGTCTGGCACAAAATATTGTCGATTTC</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGGCTTCAAAATGAGTATAATCATGACAAGGCTCTGAATTTTCGAAATTTTCGAAATTTTGGGTCCCACCACGAAAAGCGTTAAATGGTCGTAACTCGGTTGGTTTTTGGTCAAATTTGAAAATTTTAACAGTTTTGAATTTGTGACGTTTTGAGCTTCAAAATAAATATAATCATGACAAAGTTTCTAAAATTTTCGAAATTTTCGAAATTTTGGGTCCCACCACGAAAAGCGTTAAATGGTCATAACTCGGTTTATTTTTGATCAAATTTGAAAATTTTAACAGTTTTAAATTTGTGACGTTTTTAGCTTCAAAATAAGTGCAATCATAACCAGGTTCTGAATTTTTTGAAATTTTGGGTCCCACCACGAAAAGGGTTAAATTACCATAACTTGGCTCAAAATCGATATTTTTGAAATCTGAAAACTGGAATAGATAGATTTTGGAATTCCTGCTCTTTTCGTATTTTAAAAATTCAAAAATTCAAAAAAAAACTCACCAAATCTTCCACATACGGCATGTCTGGCACAAAATATTGTCGATTTCTTCGATAATTCAAAATTGATCCAAAAACTTGAGACATTGAAAATTCAACGTCCGTTTTAGGTCCAACCCTCAGAAAAGTCTCTGCCTCCAAATCTTTCCAGCTGGAAATCCATGAAATATCCAAAAAATGTCCGAATTTCAGTAAAAATCGGAAAATCGAATAATTTAATTCTGTGGAGGTCTTCAGAAGTAATCTGGATATGGTATCATTGGAATTTTTTCGTGTAATGAAGAAATGTTGAACGGAAGGAAGTGATGAATGTATGAATGGAACAATTTTCGTGCTGGAAGAGCGAGATTTAAAAACTAGAGTTTGTTGGGATTTTTGGTGCATCGTTGAGTAGCGAATTACGGATTTTGAGATGTTTCGAAGGTCTTCGATGGAGAATTTGTTGTATAGAAGACTCAGAGAGGTCAGGAATGGTGGCTCGCCTGTAAAAATAGAAAAAA</canonical>
            <polymorphic>TTTTGGCTTCAAAATGAGTATAATCATGACAAGGCTCTGAATTTTCGAAATTTTCGAAATTTTGGGTCCCACCACGAAAAGCGTTAAATGGTCGTAACTCGGTTGGTTTTTGGTCAAATTTGAAAATTTTAACAGTTTTGAATTTGTGACGTTTTGAGCTTCAAAATAAATATAATCATGACAAAGTTTCTAAAATTTTCGAAATTTTCGAAATTTTGGGTCCCACCACGAAAAGCGTTAAATGGTCATAACTCGGTTTATTTTTGATCAAATTTGAAAATTTTAACAGTTTTAAATTTGTGACGTTTTTAGCTTCAAAATAAGTGCAATCATAACCAGGTTCTGAATTTTTTGAAATTTTGGGTCCCACCACGAAAAGGGTTAAATTACCATAACTTGGCTCAAAATCGATATTTTTGAAATCTGAAAACTGGAATAGATAGATTTTGGAATTCCTGCTCTTTTCGTATTTTAAAAATTCAAAAATTCAAAAAAAAACYCACCAAATCTTCCACATACGGCATGTCTGGCACAAAATATTGTCGATTTCTTCGATAATTCAAAATTGATCCAAAAACTTGAGACATTGAAAATTCAACGTCCGTTTTAGGTCCAACCCTCAGAAAAGTCTCTGCCTCCAAATCTTTCCAGCTGGAAATCCATGAAATATCCAAAAAATGTCCGAATTTCAGTAAAAATCGGAAAATCGAATAATTTAATTCTGTGGAGGTCTTCAGAAGTAATCTGGATATGGTATCATTGGAATTTTTTCGTGTAATGAAGAAATGTTGAACGGAAGGAAGTGATGAATGTATGAATGGAACAATTTTCGTGCTGGAAGAGCGAGATTTAAAAACTAGAGTTTGTTGGGATTTTTGGTGCATCGTTGAGTAGCGAATTACGGATTTTGAGATGTTTCGAAGGTCTTCGATGGAGAATTTGTTGTATAGAAGACTCAGAGAGGTCAGGAATGGTGGCTCGCCTGTAAAAATAGAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTCCTGCTCTTTTCGTAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTACTGAAATTCGGACAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATTCCTGCTCTTTTCGTATTTTAAAAATTCAAAAATTCAAAAAAAAACTCACCAAATCTTCCACATACGGCATGTCTGGCACAAAATATTGTCGATTTCTTCGATAATTCAAAATTGATCCAAAAACTTGAGACATTGAAAATTCAACGTCCGTTTTAGGTCCAACCCTCAGAAAAGTCTCTGCCTCCAAATCTTTCCAGCTGGAAATCCATGAAATATCCAAAAAATGTCCGAATTTCAGTAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>GAATTCCTGCTCTTTTCGTATTTTAAAAATTCAAAAATTCAAAAAAAAACYCACCAAATCTTCCACATACGGCATGTCTGGCACAAAATATTGTCGATTTCTTCGATAATTCAAAATTGATCCAAAAACTTGAGACATTGAAAATTCAACGTCCGTTTTAGGTCCAACCCTCAGAAAAGTCTCTGCCTCCAAATCTTTCCAGCTGGAAATCCATGAAATATCCAAAAAATGTCCGAATTTCAGTAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32027</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>61668</contig_pos>
        <strand></strand>
        <context>ATTCAACGTC[C/T]GTTTTAGGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGATAATTCAAAATTGATCCAAAAACTTGAGACATTGAAAATTCAACGTC</left_flank>
        <right_flank>GTTTTAGGTCCAACCCTCAGAAAAGTCTCTGCCTCCAAATCTTTCCAGCT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTTTTTGGTCAAATTTGAAAATTTTAACAGTTTTGAATTTGTGACGTTTTGAGCTTCAAAATAAATATAATCATGACAAAGTTTCTAAAATTTTCGAAATTTTCGAAATTTTGGGTCCCACCACGAAAAGCGTTAAATGGTCATAACTCGGTTTATTTTTGATCAAATTTGAAAATTTTAACAGTTTTAAATTTGTGACGTTTTTAGCTTCAAAATAAGTGCAATCATAACCAGGTTCTGAATTTTTTGAAATTTTGGGTCCCACCACGAAAAGGGTTAAATTACCATAACTTGGCTCAAAATCGATATTTTTGAAATCTGAAAACTGGAATAGATAGATTTTGGAATTCCTGCTCTTTTCGTATTTTAAAAATTCAAAAATTCAAAAAAAAACTCACCAAATCTTCCACATACGGCATGTCTGGCACAAAATATTGTCGATTTCTTCGATAATTCAAAATTGATCCAAAAACTTGAGACATTGAAAATTCAACGTCCGTTTTAGGTCCAACCCTCAGAAAAGTCTCTGCCTCCAAATCTTTCCAGCTGGAAATCCATGAAATATCCAAAAAATGTCCGAATTTCAGTAAAAATCGGAAAATCGAATAATTTAATTCTGTGGAGGTCTTCAGAAGTAATCTGGATATGGTATCATTGGAATTTTTTCGTGTAATGAAGAAATGTTGAACGGAAGGAAGTGATGAATGTATGAATGGAACAATTTTCGTGCTGGAAGAGCGAGATTTAAAAACTAGAGTTTGTTGGGATTTTTGGTGCATCGTTGAGTAGCGAATTACGGATTTTGAGATGTTTCGAAGGTCTTCGATGGAGAATTTGTTGTATAGAAGACTCAGAGAGGTCAGGAATGGTGGCTCGCCTGTAAAAATAGAAAAAATTGTATCGAAAACTTTTAGAATTTTCGAGAAATATTGATTTTGAACCAACTTACAACCTAAGACATAATATACAGAAATTTGTATATGATGGCCTAGAAATCC</canonical>
            <polymorphic>TGGTTTTTGGTCAAATTTGAAAATTTTAACAGTTTTGAATTTGTGACGTTTTGAGCTTCAAAATAAATATAATCATGACAAAGTTTCTAAAATTTTCGAAATTTTCGAAATTTTGGGTCCCACCACGAAAAGCGTTAAATGGTCATAACTCGGTTTATTTTTGATCAAATTTGAAAATTTTAACAGTTTTAAATTTGTGACGTTTTTAGCTTCAAAATAAGTGCAATCATAACCAGGTTCTGAATTTTTTGAAATTTTGGGTCCCACCACGAAAAGGGTTAAATTACCATAACTTGGCTCAAAATCGATATTTTTGAAATCTGAAAACTGGAATAGATAGATTTTGGAATTCCTGCTCTTTTCGTATTTTAAAAATTCAAAAATTCAAAAAAAAACTCACCAAATCTTCCACATACGGCATGTCTGGCACAAAATATTGTCGATTTCTTCGATAATTCAAAATTGATCCAAAAACTTGAGACATTGAAAATTCAACGTCYGTTTTAGGTCCAACCCTCAGAAAAGTCTCTGCCTCCAAATCTTTCCAGCTGGAAATCCATGAAATATCCAAAAAATGTCCGAATTTCAGTAAAAATCGGAAAATCGAATAATTTAATTCTGTGGAGGTCTTCAGAAGTAATCTGGATATGGTATCATTGGAATTTTTTCGTGTAATGAAGAAATGTTGAACGGAAGGAAGTGATGAATGTATGAATGGAACAATTTTCGTGCTGGAAGAGCGAGATTTAAAAACTAGAGTTTGTTGGGATTTTTGGTGCATCGTTGAGTAGCGAATTACGGATTTTGAGATGTTTCGAAGGTCTTCGATGGAGAATTTGTTGTATAGAAGACTCAGAGAGGTCAGGAATGGTGGCTCGCCTGTAAAAATAGAAAAAATTGTATCGAAAACTTTTAGAATTTTCGAGAAATATTGATTTTGAACCAACTTACAACCTAAGACATAATATACAGAAATTTGTATATGATGGCCTAGAAATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAAAATATTGTCGATTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCCAATGATACCATATCC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CACAAAATATTGTCGATTTCTTCGATAATTCAAAATTGATCCAAAAACTTGAGACATTGAAAATTCAACGTCCGTTTTAGGTCCAACCCTCAGAAAAGTCTCTGCCTCCAAATCTTTCCAGCTGGAAATCCATGAAATATCCAAAAAATGTCCGAATTTCAGTAAAAATCGGAAAATCGAATAATTTAATTCTGTGGAGGTCTTCAGAAGTAATCTGGATATGGTATCATTGGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>CACAAAATATTGTCGATTTCTTCGATAATTCAAAATTGATCCAAAAACTTGAGACATTGAAAATTCAACGTCYGTTTTAGGTCCAACCCTCAGAAAAGTCTCTGCCTCCAAATCTTTCCAGCTGGAAATCCATGAAATATCCAAAAAATGTCCGAATTTCAGTAAAAATCGGAAAATCGAATAATTTAATTCTGTGGAGGTCTTCAGAAGTAATCTGGATATGGTATCATTGGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32028</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>61697</contig_pos>
        <strand></strand>
        <context>AGAAAAGTCT[C/T]YGCCTCCAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGACATTGAAAATTCAACGTCCGTTTTAGGTCCAACCCTCAGAAAAGTCT</left_flank>
        <right_flank>TGCCTCCAAATCTTTCCAGCTGGAAATCCATGAAATATCCAAAAAATGTC</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTTTTGAATTTGTGACGTTTTGAGCTTCAAAATAAATATAATCATGACAAAGTTTCTAAAATTTTCGAAATTTTCGAAATTTTGGGTCCCACCACGAAAAGCGTTAAATGGTCATAACTCGGTTTATTTTTGATCAAATTTGAAAATTTTAACAGTTTTAAATTTGTGACGTTTTTAGCTTCAAAATAAGTGCAATCATAACCAGGTTCTGAATTTTTTGAAATTTTGGGTCCCACCACGAAAAGGGTTAAATTACCATAACTTGGCTCAAAATCGATATTTTTGAAATCTGAAAACTGGAATAGATAGATTTTGGAATTCCTGCTCTTTTCGTATTTTAAAAATTCAAAAATTCAAAAAAAAACTCACCAAATCTTCCACATACGGCATGTCTGGCACAAAATATTGTCGATTTCTTCGATAATTCAAAATTGATCCAAAAACTTGAGACATTGAAAATTCAACGTCCGTTTTAGGTCCAACCCTCAGAAAAGTCTCTGCCTCCAAATCTTTCCAGCTGGAAATCCATGAAATATCCAAAAAATGTCCGAATTTCAGTAAAAATCGGAAAATCGAATAATTTAATTCTGTGGAGGTCTTCAGAAGTAATCTGGATATGGTATCATTGGAATTTTTTCGTGTAATGAAGAAATGTTGAACGGAAGGAAGTGATGAATGTATGAATGGAACAATTTTCGTGCTGGAAGAGCGAGATTTAAAAACTAGAGTTTGTTGGGATTTTTGGTGCATCGTTGAGTAGCGAATTACGGATTTTGAGATGTTTCGAAGGTCTTCGATGGAGAATTTGTTGTATAGAAGACTCAGAGAGGTCAGGAATGGTGGCTCGCCTGTAAAAATAGAAAAAATTGTATCGAAAACTTTTAGAATTTTCGAGAAATATTGATTTTGAACCAACTTACAACCTAAGACATAATATACAGAAATTTGTATATGATGGCCTAGAAATCCGTTTTTCTAGGACATCAGGTGAAAATTCT</canonical>
            <polymorphic>CAGTTTTGAATTTGTGACGTTTTGAGCTTCAAAATAAATATAATCATGACAAAGTTTCTAAAATTTTCGAAATTTTCGAAATTTTGGGTCCCACCACGAAAAGCGTTAAATGGTCATAACTCGGTTTATTTTTGATCAAATTTGAAAATTTTAACAGTTTTAAATTTGTGACGTTTTTAGCTTCAAAATAAGTGCAATCATAACCAGGTTCTGAATTTTTTGAAATTTTGGGTCCCACCACGAAAAGGGTTAAATTACCATAACTTGGCTCAAAATCGATATTTTTGAAATCTGAAAACTGGAATAGATAGATTTTGGAATTCCTGCTCTTTTCGTATTTTAAAAATTCAAAAATTCAAAAAAAAACTCACCAAATCTTCCACATACGGCATGTCTGGCACAAAATATTGTCGATTTCTTCGATAATTCAAAATTGATCCAAAAACTTGAGACATTGAAAATTCAACGTCCGTTTTAGGTCCAACCCTCAGAAAAGTCTYTGCCTCCAAATCTTTCCAGCTGGAAATCCATGAAATATCCAAAAAATGTCCGAATTTCAGTAAAAATCGGAAAATCGAATAATTTAATTCTGTGGAGGTCTTCAGAAGTAATCTGGATATGGTATCATTGGAATTTTTTCGTGTAATGAAGAAATGTTGAACGGAAGGAAGTGATGAATGTATGAATGGAACAATTTTCGTGCTGGAAGAGCGAGATTTAAAAACTAGAGTTTGTTGGGATTTTTGGTGCATCGTTGAGTAGCGAATTACGGATTTTGAGATGTTTCGAAGGTCTTCGATGGAGAATTTGTTGTATAGAAGACTCAGAGAGGTCAGGAATGGTGGCTCGCCTGTAAAAATAGAAAAAATTGTATCGAAAACTTTTAGAATTTTCGAGAAATATTGATTTTGAACCAACTTACAACCTAAGACATAATATACAGAAATTTGTATATGATGGCCTAGAAATCCGTTTTTCTAGGACATCAGGTGAAAATTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAACTTGAGACATTGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTTCCATTCATACATTCATCACT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CAAAAACTTGAGACATTGAAAATTCAACGTCCGTTTTAGGTCCAACCCTCAGAAAAGTCTCTGCCTCCAAATCTTTCCAGCTGGAAATCCATGAAATATCCAAAAAATGTCCGAATTTCAGTAAAAATCGGAAAATCGAATAATTTAATTCTGTGGAGGTCTTCAGAAGTAATCTGGATATGGTATCATTGGAATTTTTTCGTGTAATGAAGAAATGTTGAACGGAAGGAAGTGATGAATGTATGAATGGAAC</canonical_amplicon>
		<polymorphic_amplicon>CAAAAACTTGAGACATTGAAAATTCAACGTCCGTTTTAGGTCCAACCCTCAGAAAAGTCTYTGCCTCCAAATCTTTCCAGCTGGAAATCCATGAAATATCCAAAAAATGTCCGAATTTCAGTAAAAATCGGAAAATCGAATAATTTAATTCTGTGGAGGTCTTCAGAAGTAATCTGGATATGGTATCATTGGAATTTTTTCGTGTAATGAAGAAATGTTGAACGGAAGGAAGTGATGAATGTATGAATGGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32029</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>61698</contig_pos>
        <strand></strand>
        <context>GAAAAGTCTY[T/C]GCCTCCAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GACATTGAAAATTCAACGTCCGTTTTAGGTCCAACCCTCAGAAAAGTCTC</left_flank>
        <right_flank>GCCTCCAAATCTTTCCAGCTGGAAATCCATGAAATATCCAAAAAATGTCC</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTTTGAATTTGTGACGTTTTGAGCTTCAAAATAAATATAATCATGACAAAGTTTCTAAAATTTTCGAAATTTTCGAAATTTTGGGTCCCACCACGAAAAGCGTTAAATGGTCATAACTCGGTTTATTTTTGATCAAATTTGAAAATTTTAACAGTTTTAAATTTGTGACGTTTTTAGCTTCAAAATAAGTGCAATCATAACCAGGTTCTGAATTTTTTGAAATTTTGGGTCCCACCACGAAAAGGGTTAAATTACCATAACTTGGCTCAAAATCGATATTTTTGAAATCTGAAAACTGGAATAGATAGATTTTGGAATTCCTGCTCTTTTCGTATTTTAAAAATTCAAAAATTCAAAAAAAAACTCACCAAATCTTCCACATACGGCATGTCTGGCACAAAATATTGTCGATTTCTTCGATAATTCAAAATTGATCCAAAAACTTGAGACATTGAAAATTCAACGTCCGTTTTAGGTCCAACCCTCAGAAAAGTCTCTGCCTCCAAATCTTTCCAGCTGGAAATCCATGAAATATCCAAAAAATGTCCGAATTTCAGTAAAAATCGGAAAATCGAATAATTTAATTCTGTGGAGGTCTTCAGAAGTAATCTGGATATGGTATCATTGGAATTTTTTCGTGTAATGAAGAAATGTTGAACGGAAGGAAGTGATGAATGTATGAATGGAACAATTTTCGTGCTGGAAGAGCGAGATTTAAAAACTAGAGTTTGTTGGGATTTTTGGTGCATCGTTGAGTAGCGAATTACGGATTTTGAGATGTTTCGAAGGTCTTCGATGGAGAATTTGTTGTATAGAAGACTCAGAGAGGTCAGGAATGGTGGCTCGCCTGTAAAAATAGAAAAAATTGTATCGAAAACTTTTAGAATTTTCGAGAAATATTGATTTTGAACCAACTTACAACCTAAGACATAATATACAGAAATTTGTATATGATGGCCTAGAAATCCGTTTTTCTAGGACATCAGGTGAAAATTCTT</canonical>
            <polymorphic>AGTTTTGAATTTGTGACGTTTTGAGCTTCAAAATAAATATAATCATGACAAAGTTTCTAAAATTTTCGAAATTTTCGAAATTTTGGGTCCCACCACGAAAAGCGTTAAATGGTCATAACTCGGTTTATTTTTGATCAAATTTGAAAATTTTAACAGTTTTAAATTTGTGACGTTTTTAGCTTCAAAATAAGTGCAATCATAACCAGGTTCTGAATTTTTTGAAATTTTGGGTCCCACCACGAAAAGGGTTAAATTACCATAACTTGGCTCAAAATCGATATTTTTGAAATCTGAAAACTGGAATAGATAGATTTTGGAATTCCTGCTCTTTTCGTATTTTAAAAATTCAAAAATTCAAAAAAAAACTCACCAAATCTTCCACATACGGCATGTCTGGCACAAAATATTGTCGATTTCTTCGATAATTCAAAATTGATCCAAAAACTTGAGACATTGAAAATTCAACGTCCGTTTTAGGTCCAACCCTCAGAAAAGTCTCYGCCTCCAAATCTTTCCAGCTGGAAATCCATGAAATATCCAAAAAATGTCCGAATTTCAGTAAAAATCGGAAAATCGAATAATTTAATTCTGTGGAGGTCTTCAGAAGTAATCTGGATATGGTATCATTGGAATTTTTTCGTGTAATGAAGAAATGTTGAACGGAAGGAAGTGATGAATGTATGAATGGAACAATTTTCGTGCTGGAAGAGCGAGATTTAAAAACTAGAGTTTGTTGGGATTTTTGGTGCATCGTTGAGTAGCGAATTACGGATTTTGAGATGTTTCGAAGGTCTTCGATGGAGAATTTGTTGTATAGAAGACTCAGAGAGGTCAGGAATGGTGGCTCGCCTGTAAAAATAGAAAAAATTGTATCGAAAACTTTTAGAATTTTCGAGAAATATTGATTTTGAACCAACTTACAACCTAAGACATAATATACAGAAATTTGTATATGATGGCCTAGAAATCCGTTTTTCTAGGACATCAGGTGAAAATTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAACTTGAGACATTGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTTCCATTCATACATTCATCACT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CAAAAACTTGAGACATTGAAAATTCAACGTCCGTTTTAGGTCCAACCCTCAGAAAAGTCTCTGCCTCCAAATCTTTCCAGCTGGAAATCCATGAAATATCCAAAAAATGTCCGAATTTCAGTAAAAATCGGAAAATCGAATAATTTAATTCTGTGGAGGTCTTCAGAAGTAATCTGGATATGGTATCATTGGAATTTTTTCGTGTAATGAAGAAATGTTGAACGGAAGGAAGTGATGAATGTATGAATGGAAC</canonical_amplicon>
		<polymorphic_amplicon>CAAAAACTTGAGACATTGAAAATTCAACGTCCGTTTTAGGTCCAACCCTCAGAAAAGTCTCYGCCTCCAAATCTTTCCAGCTGGAAATCCATGAAATATCCAAAAAATGTCCGAATTTCAGTAAAAATCGGAAAATCGAATAATTTAATTCTGTGGAGGTCTTCAGAAGTAATCTGGATATGGTATCATTGGAATTTTTTCGTGTAATGAAGAAATGTTGAACGGAAGGAAGTGATGAATGTATGAATGGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32030</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>61896</contig_pos>
        <strand></strand>
        <context>GAACAATTTT[C/G]GTGCTGGAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAGAAATGTTGAACGGAAGGAAGTGATGAATGTATGAATGGAACAATTTT</left_flank>
        <right_flank>GTGCTGGAAGAGCGAGATTTAAAAACTAGAGTTTGTTGGGATTTTTGGTG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAACCAGGTTCTGAATTTTTTGAAATTTTGGGTCCCACCACGAAAAGGGTTAAATTACCATAACTTGGCTCAAAATCGATATTTTTGAAATCTGAAAACTGGAATAGATAGATTTTGGAATTCCTGCTCTTTTCGTATTTTAAAAATTCAAAAATTCAAAAAAAAACTCACCAAATCTTCCACATACGGCATGTCTGGCACAAAATATTGTCGATTTCTTCGATAATTCAAAATTGATCCAAAAACTTGAGACATTGAAAATTCAACGTCCGTTTTAGGTCCAACCCTCAGAAAAGTCTCTGCCTCCAAATCTTTCCAGCTGGAAATCCATGAAATATCCAAAAAATGTCCGAATTTCAGTAAAAATCGGAAAATCGAATAATTTAATTCTGTGGAGGTCTTCAGAAGTAATCTGGATATGGTATCATTGGAATTTTTTCGTGTAATGAAGAAATGTTGAACGGAAGGAAGTGATGAATGTATGAATGGAACAATTTTCGTGCTGGAAGAGCGAGATTTAAAAACTAGAGTTTGTTGGGATTTTTGGTGCATCGTTGAGTAGCGAATTACGGATTTTGAGATGTTTCGAAGGTCTTCGATGGAGAATTTGTTGTATAGAAGACTCAGAGAGGTCAGGAATGGTGGCTCGCCTGTAAAAATAGAAAAAATTGTATCGAAAACTTTTAGAATTTTCGAGAAATATTGATTTTGAACCAACTTACAACCTAAGACATAATATACAGAAATTTGTATATGATGGCCTAGAAATCCGTTTTTCTAGGACATCAGGTGAAAATTCTTCTAAACAATTTTTTAATAAAAATTTTTGAAATTTAAGGATCTATTTAAAAGTGTTCTTAGATTCTAAAAATAATGATTTTGAACCGAGTTATGGCATTTTGAAGTTTGTGGTCTAGAAAATCTAGAACTACAATTTTTGACATGTGGCCTAGATATCCATAAACTTGGTTTTCTGGCCTATTTATATTTAAAGAGATG</canonical>
            <polymorphic>ATAACCAGGTTCTGAATTTTTTGAAATTTTGGGTCCCACCACGAAAAGGGTTAAATTACCATAACTTGGCTCAAAATCGATATTTTTGAAATCTGAAAACTGGAATAGATAGATTTTGGAATTCCTGCTCTTTTCGTATTTTAAAAATTCAAAAATTCAAAAAAAAACTCACCAAATCTTCCACATACGGCATGTCTGGCACAAAATATTGTCGATTTCTTCGATAATTCAAAATTGATCCAAAAACTTGAGACATTGAAAATTCAACGTCCGTTTTAGGTCCAACCCTCAGAAAAGTCTCTGCCTCCAAATCTTTCCAGCTGGAAATCCATGAAATATCCAAAAAATGTCCGAATTTCAGTAAAAATCGGAAAATCGAATAATTTAATTCTGTGGAGGTCTTCAGAAGTAATCTGGATATGGTATCATTGGAATTTTTTCGTGTAATGAAGAAATGTTGAACGGAAGGAAGTGATGAATGTATGAATGGAACAATTTTSGTGCTGGAAGAGCGAGATTTAAAAACTAGAGTTTGTTGGGATTTTTGGTGCATCGTTGAGTAGCGAATTACGGATTTTGAGATGTTTCGAAGGTCTTCGATGGAGAATTTGTTGTATAGAAGACTCAGAGAGGTCAGGAATGGTGGCTCGCCTGTAAAAATAGAAAAAATTGTATCGAAAACTTTTAGAATTTTCGAGAAATATTGATTTTGAACCAACTTACAACCTAAGACATAATATACAGAAATTTGTATATGATGGCCTAGAAATCCGTTTTTCTAGGACATCAGGTGAAAATTCTTCTAAACAATTTTTTAATAAAAATTTTTGAAATTTAAGGATCTATTTAAAAGTGTTCTTAGATTCTAAAAATAATGATTTTGAACCGAGTTATGGCATTTTGAAGTTTGTGGTCTAGAAAATCTAGAACTACAATTTTTGACATGTGGCCTAGATATCCATAAACTTGGTTTTCTGGCCTATTTATATTTAAAGAGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGAGGTCTTCAGAAGTAATCT</pcr_primer_p1>
		<pcr_primer_p2>CCTGACCTCTCTGAGTCTTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTGGAGGTCTTCAGAAGTAATCTGGATATGGTATCATTGGAATTTTTTCGTGTAATGAAGAAATGTTGAACGGAAGGAAGTGATGAATGTATGAATGGAACAATTTTCGTGCTGGAAGAGCGAGATTTAAAAACTAGAGTTTGTTGGGATTTTTGGTGCATCGTTGAGTAGCGAATTACGGATTTTGAGATGTTTCGAAGGTCTTCGATGGAGAATTTGTTGTATAGAAGACTCAGAGAGGTCAGG</canonical_amplicon>
		<polymorphic_amplicon>GTGGAGGTCTTCAGAAGTAATCTGGATATGGTATCATTGGAATTTTTTCGTGTAATGAAGAAATGTTGAACGGAAGGAAGTGATGAATGTATGAATGGAACAATTTTSGTGCTGGAAGAGCGAGATTTAAAAACTAGAGTTTGTTGGGATTTTTGGTGCATCGTTGAGTAGCGAATTACGGATTTTGAGATGTTTCGAAGGTCTTCGATGGAGAATTTGTTGTATAGAAGACTCAGAGAGGTCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32031</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>62046</contig_pos>
        <strand></strand>
        <context>ATGGTGGCTC[G/A]CCTGTAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATGGAGAATTTGTTGTATAGAAGACTCAGAGAGGTCAGGAATGGTGGCTC</left_flank>
        <right_flank>CCTGTAAAAATAGAAAAAATTGTATCGAAAACTTTTAGAATTTTCGAGAA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATTCAAAAAAAAACTCACCAAATCTTCCACATACGGCATGTCTGGCACAAAATATTGTCGATTTCTTCGATAATTCAAAATTGATCCAAAAACTTGAGACATTGAAAATTCAACGTCCGTTTTAGGTCCAACCCTCAGAAAAGTCTCTGCCTCCAAATCTTTCCAGCTGGAAATCCATGAAATATCCAAAAAATGTCCGAATTTCAGTAAAAATCGGAAAATCGAATAATTTAATTCTGTGGAGGTCTTCAGAAGTAATCTGGATATGGTATCATTGGAATTTTTTCGTGTAATGAAGAAATGTTGAACGGAAGGAAGTGATGAATGTATGAATGGAACAATTTTCGTGCTGGAAGAGCGAGATTTAAAAACTAGAGTTTGTTGGGATTTTTGGTGCATCGTTGAGTAGCGAATTACGGATTTTGAGATGTTTCGAAGGTCTTCGATGGAGAATTTGTTGTATAGAAGACTCAGAGAGGTCAGGAATGGTGGCTCGCCTGTAAAAATAGAAAAAATTGTATCGAAAACTTTTAGAATTTTCGAGAAATATTGATTTTGAACCAACTTACAACCTAAGACATAATATACAGAAATTTGTATATGATGGCCTAGAAATCCGTTTTTCTAGGACATCAGGTGAAAATTCTTCTAAACAATTTTTTAATAAAAATTTTTGAAATTTAAGGATCTATTTAAAAGTGTTCTTAGATTCTAAAAATAATGATTTTGAACCGAGTTATGGCATTTTGAAGTTTGTGGTCTAGAAAATCTAGAACTACAATTTTTGACATGTGGCCTAGATATCCATAAACTTGGTTTTCTGGCCTATTTATATTTAAAGAGATGTAAAATTTCATGAGCTATTGGAAACAGTTTTTGAATTTTGAAAATATTGGTTTTGAACCGAGTTACGGTCGTTTTATACTTTTCGTGGTGGGACCCAAAGTTTCGAAAATTTCAGAACCTTGTCATGATTATACTCATTTTGAAGCCAAA</canonical>
            <polymorphic>AAAAATTCAAAAAAAAACTCACCAAATCTTCCACATACGGCATGTCTGGCACAAAATATTGTCGATTTCTTCGATAATTCAAAATTGATCCAAAAACTTGAGACATTGAAAATTCAACGTCCGTTTTAGGTCCAACCCTCAGAAAAGTCTCTGCCTCCAAATCTTTCCAGCTGGAAATCCATGAAATATCCAAAAAATGTCCGAATTTCAGTAAAAATCGGAAAATCGAATAATTTAATTCTGTGGAGGTCTTCAGAAGTAATCTGGATATGGTATCATTGGAATTTTTTCGTGTAATGAAGAAATGTTGAACGGAAGGAAGTGATGAATGTATGAATGGAACAATTTTCGTGCTGGAAGAGCGAGATTTAAAAACTAGAGTTTGTTGGGATTTTTGGTGCATCGTTGAGTAGCGAATTACGGATTTTGAGATGTTTCGAAGGTCTTCGATGGAGAATTTGTTGTATAGAAGACTCAGAGAGGTCAGGAATGGTGGCTCRCCTGTAAAAATAGAAAAAATTGTATCGAAAACTTTTAGAATTTTCGAGAAATATTGATTTTGAACCAACTTACAACCTAAGACATAATATACAGAAATTTGTATATGATGGCCTAGAAATCCGTTTTTCTAGGACATCAGGTGAAAATTCTTCTAAACAATTTTTTAATAAAAATTTTTGAAATTTAAGGATCTATTTAAAAGTGTTCTTAGATTCTAAAAATAATGATTTTGAACCGAGTTATGGCATTTTGAAGTTTGTGGTCTAGAAAATCTAGAACTACAATTTTTGACATGTGGCCTAGATATCCATAAACTTGGTTTTCTGGCCTATTTATATTTAAAGAGATGTAAAATTTCATGAGCTATTGGAAACAGTTTTTGAATTTTGAAAATATTGGTTTTGAACCGAGTTACGGTCGTTTTATACTTTTCGTGGTGGGACCCAAAGTTTCGAAAATTTCAGAACCTTGTCATGATTATACTCATTTTGAAGCCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGATGGAGAATTTGTTGTATAG</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTTGAAATTAAATAAGCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>880</pcr_amplicon_size>
		<canonical_amplicon>TCGATGGAGAATTTGTTGTATAGAAGACTCAGAGAGGTCAGGAATGGTGGCTCGCCTGTAAAAATAGAAAAAATTGTA</canonical_amplicon>
		<polymorphic_amplicon>TCGATGGAGAATTTGTTGTATAGAAGACTCAGAGAGGTCAGGAATGGTGGCTCRCCTGTAAAAATAGAAAAAATTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32032</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>74519</contig_pos>
        <strand>+</strand>
        <context>CAACAASGAA[C/G]AATTGATAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TATAACCTACTTTTGTGAAATGCCTCAATTGTCTAGCAACCAACAAGGAA</left_flank>
        <right_flank>AATTGATAAAAGGATTTCCAATTTTTGAAATGCTCATTTTATAATATTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCCAGAGTTTCGTGCTCAAAAAATTCCAACTCCAGTTTGATCAGTATGAAAAGTAATGATACTAAAAATGTGCAGAAATTGATGACCAAATTCAATTTGACTCGTATATGGTCATCATATCGGCTCGGTAAGAGGGAAATTAGGCATAGTTTCTTTAATGCTTACAAAACTCAAGAACTACAAAATGACACTATTTGGAATACTGTATCTTGTCTATGAACCAAGTTACAAGCCAAAAACCATCTGAGTTACGCCGTGGTCTATGTAACTTCGTTCATAGATAAGATATACTATTCCTAATAGTAATATTTTGTAGTATTTGTCGACTTCTGCCAAATTCACACTTTAAGAAAAAGTTACTTGCAGTTTTCCAGTTGTTACAGCTAGATGCATGTATGTTTTTGGATGGATCAAATCTGAATTGGGTGAGCACAAGTTGTTTGGATAATATAACCTACTTTTGTGAAATGCCTCAATTGTCTAGCAACCAACAAGGAATAATTGATAAAAGGATTTCCAATTTTTGAAATGCTCATTTTATAATATTTAAAGAATTCTTGATTAAAAATCTTTGATATTCGATGAAGCTATTACGATTTTTCGAAAACTGATGATAATAGAAAAATTGAGTTGATAATGGGAAGTTTGAGAAAAAATGTTGATCAACACTCTAATAGAACGCCACCCGGACCGTCCACTTTGAGCCTATATATCTCAGTTCCTTTGAAAGATATCAAAAAGTGATAAACTGATAAAATGTTTATTATGGTATCAGCAGCATTTCATTAGTTAACCACTTTTTGATATCTTTCACAGAAAATGAGATACACGGGCTCGAATTCGACGATTCGGCGTTCTATTAGAGTGTTTACGGTATTTGTAATTAGGAAAACATATCATATTTGAAAAAGCTGGAGATTTACAAAAATCAAGAGAATTGAGATCAAAATATTTTATTTATCAGAAATCCTTTTTTTTCATTCCTCAGGATCCAAACAG</canonical>
            <polymorphic>CGCCAGAGTTTCGTGCTCAAAAAATTCCAACTCCAGTTTGATCAGTATGAAAAGTAATGATACTAAAAATGTGCAGAAATTGATGACCAAATTCAATTTGACTCGTATATGGTCATCATATCGGCTCGGTAAGAGGGAAATTAGGCATAGTTTCTTTAATGCTTACAAAACTCAAGAACTACAAAATGACACTATTTGGAATACTGTATCTTGTCTATGAACCAAGTTACAAGCCAAAAACCATCTGAGTTACGCCGTGGTCTATGTAACTTCGTTCATAGATAAGATATACTATTCCTAATAGTAATATTTTGTAGTATTTGTCGACTTCTGCCAAATTCACACTTTAAGAAAAAGTTACTTGCAGTTTTCCAGTTGTTACAGCTAGATGCATGTATGTTTTTGGATGGATCAAATCTGAATTGGGTGAGCACAAGTTGTTTGGATAATATAACCTACTTTTGTGAAATGCCTCAATTGTCTAGCAACCAACAAGGAASAATTGATAAAAGGATTTCCAATTTTTGAAATGCTCATTTTATAATATTTAAAGAATTCTTGATTAAAAATCTTTGATATTCGATGAAGCTATTACGATTTTTCGAAAACTGATGATAATAGAAAAATTGAGTTGATAATGGGAAGTTTGAGAAAAAATGTTGATCAACACTCTAATAGAACGCCACCCGGACCGTCCACTTTGAGCCTATATATCTCAGTTCCTTTGAAAGATATCAAAAAGTGATAAACTGATAAAATGTTTATTATGGTATCAGCAGCATTTCATTAGTTAACCACTTTTTGATATCTTTCACAGAAAATGAGATACACGGGCTCGAATTCGACGATTCGGCGTTCTATTAGAGTGTTTACGGTATTTGTAATTAGGAAAACATATCATATTTGAAAAAGCTGGAGATTTACAAAAATCAAGAGAATTGAGATCAAAATATTTTATTTATCAGAAATCCTTTTTTTTCATTCCTCAGGATCCAAACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAAAAGTTACTTGCAGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TCGTAATAGCTTCATCGAATATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGAAAAAGTTACTTGCAGTTTTCCAGTTGTTACAGCTAGATGCATGTATGTTTTTGGATGGATCAAATCTGAATTGGGTGAGCACAAGTTGTTTGGATAATATAACCTACTTTTGTGAAATGCCTCAATTGTCTAGCAACCAACAAGGAATAATTGATAAAAGGATTTCCAATTTTTGAAATGCTCATTTTATAATATTTAAAGAATTCTTGATTAAAAATCTTTGATATTCGATGAAGCTATTACGA</canonical_amplicon>
		<polymorphic_amplicon>AAGAAAAAGTTACTTGCAGTTTTCCAGTTGTTACAGCTAGATGCATGTATGTTTTTGGATGGATCAAATCTGAATTGGGTGAGCACAAGTTGTTTGGATAATATAACCTACTTTTGTGAAATGCCTCAATTGTCTAGCAACCAACAAGGAASAATTGATAAAAGGATTTCCAATTTTTGAAATGCTCATTTTATAATATTTAAAGAATTCTTGATTAAAAATCTTTGATATTCGATGAAGCTATTACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32033</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>83647</contig_pos>
        <strand></strand>
        <context>TTTCGATTGT[A/T]TCTAAACTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGATTGAATCTCATCTGCGTCTCCGATGCATCCTTATACTTTCGATTGT</left_flank>
        <right_flank>TCTAAACTTTTTAAAAATAATAAAAATCCTGAAATTTCGAAATTTGACTC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCCAGAAAAAGGTCTCTAACTCGCTTTATTTTCATAAGATTTTTATGAAATCTATATTTTCTCAATCTGCGATAGAAGGCGCATCTACTGATAACAAACTGAAACTAACAATTATGAAAATGAAGCGAGTTATGACAATTTGAAAGTAGGGTTCAGAAAAAAGTCTGTAACTCATCGAATTTTCACCCAATTTTTATGGAATCTATATTTTCAGAATCTACAAAGCAAGGCGCATCTTTTCATACCGCAAAAAACTAAAAATCATAAGAACGAATCTTTTGAAAAATTTAAGACAGTTTTAATATTGTTGGCATTCAATATTGCACCTGCTTAGCAGTACCAGACTTCATTTTCATCCGATTTTTATAAAATCTATATTTTCAGAATCTGCGTAACAAGAGCAATCTAGTAAACTTACTCATTCACTTTATTATAGCTCTTCACAAACTGATTGAATCTCATCTGCGTCTCCGATGCATCCTTATACTTTCGATTGTATCTAAACTTTTTAAAAATAATAAAAATCCTGAAATTTCGAAATTTGACTCACTTAATTTTAAATTCTTTAAACGCCTTATAAACCGCCTCCGGATGCTCTCTATCGATTTTGATCTCGAAAAATTCGGGATCCTCAAAAGCTGCGAAAACGCCGAGAATTGGGGAAAATGCTAGAAAAATTGCGAAAAATCGCATGGCTGTCATCTGAATTCCTCTTCTACAGTGTTCGGAGAAGCGTTTTAAGGGTGTGCAAGAGGTTTTATGATCGGGGGATCGTAAAACTTTGTTCAGGGGGTTGGAAAGCGTCATATAAATCTTCGGGAAGAAGCATCGAGGTAGGAATTAAAAAAATCAAAAAGGGGTGATATTTTGTGTTTTCTGCAAGTTCTAGAAGCGATTTTTGATGTAACATTTGAAGAAAAATGAAATATATTTTGAGATCATCAGAAAAGAAGGCACAAAAATGAAAAAAAAAGAATAAATTATGGGTAAAAAAAGGT</canonical>
            <polymorphic>GCTCCAGAAAAAGGTCTCTAACTCGCTTTATTTTCATAAGATTTTTATGAAATCTATATTTTCTCAATCTGCGATAGAAGGCGCATCTACTGATAACAAACTGAAACTAACAATTATGAAAATGAAGCGAGTTATGACAATTTGAAAGTAGGGTTCAGAAAAAAGTCTGTAACTCATCGAATTTTCACCCAATTTTTATGGAATCTATATTTTCAGAATCTACAAAGCAAGGCGCATCTTTTCATACCGCAAAAAACTAAAAATCATAAGAACGAATCTTTTGAAAAATTTAAGACAGTTTTAATATTGTTGGCATTCAATATTGCACCTGCTTAGCAGTACCAGACTTCATTTTCATCCGATTTTTATAAAATCTATATTTTCAGAATCTGCGTAACAAGAGCAATCTAGTAAACTTACTCATTCACTTTATTATAGCTCTTCACAAACTGATTGAATCTCATCTGCGTCTCCGATGCATCCTTATACTTTCGATTGTWTCTAAACTTTTTAAAAATAATAAAAATCCTGAAATTTCGAAATTTGACTCACTTAATTTTAAATTCTTTAAACGCCTTATAAACCGCCTCCGGATGCTCTCTATCGATTTTGATCTCGAAAAATTCGGGATCCTCAAAAGCTGCGAAAACGCCGAGAATTGGGGAAAATGCTAGAAAAATTGCGAAAAATCGCATGGCTGTCATCTGAATTCCTCTTCTACAGTGTTCGGAGAAGCGTTTTAAGGGTGTGCAAGAGGTTTTATGATCGGGGGATCGTAAAACTTTGTTCAGGGGGTTGGAAAGCGTCATATAAATCTTCGGGAAGAAGCATCGAGGTAGGAATTAAAAAAATCAAAAAGGGGTGATATTTTGTGTTTTCTGCAAGTTCTAGAAGCGATTTTTGATGTAACATTTGAAGAAAAATGAAATATATTTTGAGATCATCAGAAAAGAAGGCACAAAAATGAAAAAAAAAGAATAAATTATGGGTAAAAAAAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTTTCAGAATCTGCGTAACA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCGAGATCAAAATCGATAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATATTTTCAGAATCTGCGTAACAAGAGCAATCTAGTAAACTTACTCATTCACTTTATTATAGCTCTTCACAAACTGATTGAATCTCATCTGCGTCTCCGATGCATCCTTATACTTTCGATTGTATCTAAACTTTTTAAAAATAATAAAAATCCTGAAATTTCGAAATTTGACTCACTTAATTTTAAATTCTTTAAACGCCTTATAAACCGCCTCCGGATGCTCTCTATCGATTTTGATCTCGAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATATTTTCAGAATCTGCGTAACAAGAGCAATCTAGTAAACTTACTCATTCACTTTATTATAGCTCTTCACAAACTGATTGAATCTCATCTGCGTCTCCGATGCATCCTTATACTTTCGATTGTWTCTAAACTTTTTAAAAATAATAAAAATCCTGAAATTTCGAAATTTGACTCACTTAATTTTAAATTCTTTAAACGCCTTATAAACCGCCTCCGGATGCTCTCTATCGATTTTGATCTCGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32034</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>83716</contig_pos>
        <strand>+</strand>
        <context>TTAAATTCTT[C/T]AAACGCCTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATAAAAATCCTGAAATTTCGAAATTTGACTCACTTAATTTTAAATTCTT</left_flank>
        <right_flank>AAACGCCTTATAAACCGCCTCCGGATGCTCTCTATCGATTTTGATCTCGA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCGATAGAAGGCGCATCTACTGATAACAAACTGAAACTAACAATTATGAAAATGAAGCGAGTTATGACAATTTGAAAGTAGGGTTCAGAAAAAAGTCTGTAACTCATCGAATTTTCACCCAATTTTTATGGAATCTATATTTTCAGAATCTACAAAGCAAGGCGCATCTTTTCATACCGCAAAAAACTAAAAATCATAAGAACGAATCTTTTGAAAAATTTAAGACAGTTTTAATATTGTTGGCATTCAATATTGCACCTGCTTAGCAGTACCAGACTTCATTTTCATCCGATTTTTATAAAATCTATATTTTCAGAATCTGCGTAACAAGAGCAATCTAGTAAACTTACTCATTCACTTTATTATAGCTCTTCACAAACTGATTGAATCTCATCTGCGTCTCCGATGCATCCTTATACTTTCGATTGTATCTAAACTTTTTAAAAATAATAAAAATCCTGAAATTTCGAAATTTGACTCACTTAATTTTAAATTCTTTAAACGCCTTATAAACCGCCTCCGGATGCTCTCTATCGATTTTGATCTCGAAAAATTCGGGATCCTCAAAAGCTGCGAAAACGCCGAGAATTGGGGAAAATGCTAGAAAAATTGCGAAAAATCGCATGGCTGTCATCTGAATTCCTCTTCTACAGTGTTCGGAGAAGCGTTTTAAGGGTGTGCAAGAGGTTTTATGATCGGGGGATCGTAAAACTTTGTTCAGGGGGTTGGAAAGCGTCATATAAATCTTCGGGAAGAAGCATCGAGGTAGGAATTAAAAAAATCAAAAAGGGGTGATATTTTGTGTTTTCTGCAAGTTCTAGAAGCGATTTTTGATGTAACATTTGAAGAAAAATGAAATATATTTTGAGATCATCAGAAAAGAAGGCACAAAAATGAAAAAAAAAGAATAAATTATGGGTAAAAAAAGGTCAATCAACAACAGATAACCGCAAAAACTCAAATTCAACGGGGAACAATTTGGGGAAAACGGCTACAGTA</canonical>
            <polymorphic>TGCGATAGAAGGCGCATCTACTGATAACAAACTGAAACTAACAATTATGAAAATGAAGCGAGTTATGACAATTTGAAAGTAGGGTTCAGAAAAAAGTCTGTAACTCATCGAATTTTCACCCAATTTTTATGGAATCTATATTTTCAGAATCTACAAAGCAAGGCGCATCTTTTCATACCGCAAAAAACTAAAAATCATAAGAACGAATCTTTTGAAAAATTTAAGACAGTTTTAATATTGTTGGCATTCAATATTGCACCTGCTTAGCAGTACCAGACTTCATTTTCATCCGATTTTTATAAAATCTATATTTTCAGAATCTGCGTAACAAGAGCAATCTAGTAAACTTACTCATTCACTTTATTATAGCTCTTCACAAACTGATTGAATCTCATCTGCGTCTCCGATGCATCCTTATACTTTCGATTGTATCTAAACTTTTTAAAAATAATAAAAATCCTGAAATTTCGAAATTTGACTCACTTAATTTTAAATTCTTYAAACGCCTTATAAACCGCCTCCGGATGCTCTCTATCGATTTTGATCTCGAAAAATTCGGGATCCTCAAAAGCTGCGAAAACGCCGAGAATTGGGGAAAATGCTAGAAAAATTGCGAAAAATCGCATGGCTGTCATCTGAATTCCTCTTCTACAGTGTTCGGAGAAGCGTTTTAAGGGTGTGCAAGAGGTTTTATGATCGGGGGATCGTAAAACTTTGTTCAGGGGGTTGGAAAGCGTCATATAAATCTTCGGGAAGAAGCATCGAGGTAGGAATTAAAAAAATCAAAAAGGGGTGATATTTTGTGTTTTCTGCAAGTTCTAGAAGCGATTTTTGATGTAACATTTGAAGAAAAATGAAATATATTTTGAGATCATCAGAAAAGAAGGCACAAAAATGAAAAAAAAAGAATAAATTATGGGTAAAAAAAGGTCAATCAACAACAGATAACCGCAAAAACTCAAATTCAACGGGGAACAATTTGGGGAAAACGGCTACAGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 443 48 9</canonical_bands>
                <polymorphic_bands>509 443 48</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>226 221 210 172 103 42 11 9 6</canonical_bands>
                <polymorphic_bands>226 221 210 181 103 42 11 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCCGATGCATCCTTATACTT</pcr_primer_p1>
		<pcr_primer_p2>TAGAAGAGGAATTCAGATGACAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCCGATGCATCCTTATACTTTCGATTGTATCTAAACTTTTTAAAAATAATAAAAATCCTGAAATTTCGAAATTTGACTCACTTAATTTTAAATTCTTTAAACGCCTTATAAACCGCCTCCGGATGCTCTCTATCGATTTTGATCTCGAAAAATTCGGGATCCTCAAAAGCTGCGAAAACGCCGAGAATTGGGGAAAATGCTAGAAAAATTGCGAAAAATCGCATGGCTGTCATCTGAATTCCTCTTCTA</canonical_amplicon>
		<polymorphic_amplicon>CTCCGATGCATCCTTATACTTTCGATTGTATCTAAACTTTTTAAAAATAATAAAAATCCTGAAATTTCGAAATTTGACTCACTTAATTTTAAATTCTTYAAACGCCTTATAAACCGCCTCCGGATGCTCTCTATCGATTTTGATCTCGAAAAATTCGGGATCCTCAAAAGCTGCGAAAACGCCGAGAATTGGGGAAAATGCTAGAAAAATTGCGAAAAATCGCATGGCTGTCATCTGAATTCCTCTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32035</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>83930</contig_pos>
        <strand>+</strand>
        <context>ATCGTAAAAC[A/T]TTGTTCAGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGCGTTTTAAGGGTGTGCAAGAGGTTTTATGATCGGGGGATCGTAAAAC</left_flank>
        <right_flank>TTGTTCAGGGGGTTGGAAAGCGTCATATAAATCTTCGGGAAGAAGCATCG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATTTAAGACAGTTTTAATATTGTTGGCATTCAATATTGCACCTGCTTAGCAGTACCAGACTTCATTTTCATCCGATTTTTATAAAATCTATATTTTCAGAATCTGCGTAACAAGAGCAATCTAGTAAACTTACTCATTCACTTTATTATAGCTCTTCACAAACTGATTGAATCTCATCTGCGTCTCCGATGCATCCTTATACTTTCGATTGTATCTAAACTTTTTAAAAATAATAAAAATCCTGAAATTTCGAAATTTGACTCACTTAATTTTAAATTCTTTAAACGCCTTATAAACCGCCTCCGGATGCTCTCTATCGATTTTGATCTCGAAAAATTCGGGATCCTCAAAAGCTGCGAAAACGCCGAGAATTGGGGAAAATGCTAGAAAAATTGCGAAAAATCGCATGGCTGTCATCTGAATTCCTCTTCTACAGTGTTCGGAGAAGCGTTTTAAGGGTGTGCAAGAGGTTTTATGATCGGGGGATCGTAAAACTTTGTTCAGGGGGTTGGAAAGCGTCATATAAATCTTCGGGAAGAAGCATCGAGGTAGGAATTAAAAAAATCAAAAAGGGGTGATATTTTGTGTTTTCTGCAAGTTCTAGAAGCGATTTTTGATGTAACATTTGAAGAAAAATGAAATATATTTTGAGATCATCAGAAAAGAAGGCACAAAAATGAAAAAAAAAGAATAAATTATGGGTAAAAAAAGGTCAATCAACAACAGATAACCGCAAAAACTCAAATTCAACGGGGAACAATTTGGGGAAAACGGCTACAGTATGCGGGAGATGATTTTGAATAATTATTCGAAACACGGCCATATTCACTCGTTCCATCGCCTCCTTCTCGTGCGGCAATCCCTCGTCGATGGCGTTGTCACGAAGCGATTTGTGGTAGATGTCGATGGTGTCTCGCGTCGTGTTTCGGAACTGAAAATTCAAAAAGCTCAAAAAAATTCCTAAATTTTAGAAAAATTTTAGTGAAAAAGCTGAAA</canonical>
            <polymorphic>AAAAATTTAAGACAGTTTTAATATTGTTGGCATTCAATATTGCACCTGCTTAGCAGTACCAGACTTCATTTTCATCCGATTTTTATAAAATCTATATTTTCAGAATCTGCGTAACAAGAGCAATCTAGTAAACTTACTCATTCACTTTATTATAGCTCTTCACAAACTGATTGAATCTCATCTGCGTCTCCGATGCATCCTTATACTTTCGATTGTATCTAAACTTTTTAAAAATAATAAAAATCCTGAAATTTCGAAATTTGACTCACTTAATTTTAAATTCTTTAAACGCCTTATAAACCGCCTCCGGATGCTCTCTATCGATTTTGATCTCGAAAAATTCGGGATCCTCAAAAGCTGCGAAAACGCCGAGAATTGGGGAAAATGCTAGAAAAATTGCGAAAAATCGCATGGCTGTCATCTGAATTCCTCTTCTACAGTGTTCGGAGAAGCGTTTTAAGGGTGTGCAAGAGGTTTTATGATCGGGGGATCGTAAAACWTTGTTCAGGGGGTTGGAAAGCGTCATATAAATCTTCGGGAAGAAGCATCGAGGTAGGAATTAAAAAAATCAAAAAGGGGTGATATTTTGTGTTTTCTGCAAGTTCTAGAAGCGATTTTTGATGTAACATTTGAAGAAAAATGAAATATATTTTGAGATCATCAGAAAAGAAGGCACAAAAATGAAAAAAAAAGAATAAATTATGGGTAAAAAAAGGTCAATCAACAACAGATAACCGCAAAAACTCAAATTCAACGGGGAACAATTTGGGGAAAACGGCTACAGTATGCGGGAGATGATTTTGAATAATTATTCGAAACACGGCCATATTCACTCGTTCCATCGCCTCCTTCTCGTGCGGCAATCCCTCGTCGATGGCGTTGTCACGAAGCGATTTGTGGTAGATGTCGATGGTGTCTCGCGTCGTGTTTCGGAACTGAAAATTCAAAAAGCTCAAAAAAATTCCTAAATTTTAGAAAAATTTTAGTGAAAAAGCTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAGAAAAATTGCGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCTTCAAATGTTACATCAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTAGAAAAATTGCGAAAAATCGCATGGCTGTCATCTGAATTCCTCTTCTACAGTGTTCGGAGAAGCGTTTTAAGGGTGTGCAAGAGGTTTTATGATCGGGGGATCGTAAAACTTTGTTCAGGGGGTTGGAAAGCGTCATATAAATCTTCGGGAAGAAGCATCGAGGTAGGAATTAAAAAAATCAAAAAGGGGTGATATTTTGTGTTTTCTGCAAGTTCTAGAAGCGATTTTTGATGTAACATTTGAAGA</canonical_amplicon>
		<polymorphic_amplicon>GCTAGAAAAATTGCGAAAAATCGCATGGCTGTCATCTGAATTCCTCTTCTACAGTGTTCGGAGAAGCGTTTTAAGGGTGTGCAAGAGGTTTTATGATCGGGGGATCGTAAAACWTTGTTCAGGGGGTTGGAAAGCGTCATATAAATCTTCGGGAAGAAGCATCGAGGTAGGAATTAAAAAAATCAAAAAGGGGTGATATTTTGTGTTTTCTGCAAGTTCTAGAAGCGATTTTTGATGTAACATTTGAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32036</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>84106</contig_pos>
        <strand>+</strand>
        <context>AAAGAAGGCA[A/G]AAAAATGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATTTGAAGAAAAATGAAATATATTTTGAGATCATCAGAAAAGAAGGCA</left_flank>
        <right_flank>AAAAATGAAAAAAAAAGAATAAATTATGGGTAAAAAAAGGTCAATCAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCATCTGCGTCTCCGATGCATCCTTATACTTTCGATTGTATCTAAACTTTTTAAAAATAATAAAAATCCTGAAATTTCGAAATTTGACTCACTTAATTTTAAATTCTTTAAACGCCTTATAAACCGCCTCCGGATGCTCTCTATCGATTTTGATCTCGAAAAATTCGGGATCCTCAAAAGCTGCGAAAACGCCGAGAATTGGGGAAAATGCTAGAAAAATTGCGAAAAATCGCATGGCTGTCATCTGAATTCCTCTTCTACAGTGTTCGGAGAAGCGTTTTAAGGGTGTGCAAGAGGTTTTATGATCGGGGGATCGTAAAACTTTGTTCAGGGGGTTGGAAAGCGTCATATAAATCTTCGGGAAGAAGCATCGAGGTAGGAATTAAAAAAATCAAAAAGGGGTGATATTTTGTGTTTTCTGCAAGTTCTAGAAGCGATTTTTGATGTAACATTTGAAGAAAAATGAAATATATTTTGAGATCATCAGAAAAGAAGGCACAAAAATGAAAAAAAAAGAATAAATTATGGGTAAAAAAAGGTCAATCAACAACAGATAACCGCAAAAACTCAAATTCAACGGGGAACAATTTGGGGAAAACGGCTACAGTATGCGGGAGATGATTTTGAATAATTATTCGAAACACGGCCATATTCACTCGTTCCATCGCCTCCTTCTCGTGCGGCAATCCCTCGTCGATGGCGTTGTCACGAAGCGATTTGTGGTAGATGTCGATGGTGTCTCGCGTCGTGTTTCGGAACTGAAAATTCAAAAAGCTCAAAAAAATTCCTAAATTTTAGAAAAATTTTAGTGAAAAAGCTGAAATTTTTCAAATTTTTCAAAAGATGACATTTTCGAAAAAAAAATTTCGAAATTTTGATTTTACACCTGGTAAGCAGTACCAAAATTTCATTTTACTATTGCCTGGCAGGTGCAAATTTTCGTTTCACACCTGCTAAGCAGTACCAAAATCGGAGAAATCTTGCACTAACTTTTTTACT</canonical>
            <polymorphic>CTCATCTGCGTCTCCGATGCATCCTTATACTTTCGATTGTATCTAAACTTTTTAAAAATAATAAAAATCCTGAAATTTCGAAATTTGACTCACTTAATTTTAAATTCTTTAAACGCCTTATAAACCGCCTCCGGATGCTCTCTATCGATTTTGATCTCGAAAAATTCGGGATCCTCAAAAGCTGCGAAAACGCCGAGAATTGGGGAAAATGCTAGAAAAATTGCGAAAAATCGCATGGCTGTCATCTGAATTCCTCTTCTACAGTGTTCGGAGAAGCGTTTTAAGGGTGTGCAAGAGGTTTTATGATCGGGGGATCGTAAAACTTTGTTCAGGGGGTTGGAAAGCGTCATATAAATCTTCGGGAAGAAGCATCGAGGTAGGAATTAAAAAAATCAAAAAGGGGTGATATTTTGTGTTTTCTGCAAGTTCTAGAAGCGATTTTTGATGTAACATTTGAAGAAAAATGAAATATATTTTGAGATCATCAGAAAAGAAGGCARAAAAATGAAAAAAAAAGAATAAATTATGGGTAAAAAAAGGTCAATCAACAACAGATAACCGCAAAAACTCAAATTCAACGGGGAACAATTTGGGGAAAACGGCTACAGTATGCGGGAGATGATTTTGAATAATTATTCGAAACACGGCCATATTCACTCGTTCCATCGCCTCCTTCTCGTGCGGCAATCCCTCGTCGATGGCGTTGTCACGAAGCGATTTGTGGTAGATGTCGATGGTGTCTCGCGTCGTGTTTCGGAACTGAAAATTCAAAAAGCTCAAAAAAATTCCTAAATTTTAGAAAAATTTTAGTGAAAAAGCTGAAATTTTTCAAATTTTTCAAAAGATGACATTTTCGAAAAAAAAATTTCGAAATTTTGATTTTACACCTGGTAAGCAGTACCAAAATTTCATTTTACTATTGCCTGGCAGGTGCAAATTTTCGTTTCACACCTGCTAAGCAGTACCAAAATCGGAGAAATCTTGCACTAACTTTTTTACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>174 145 114 92 84 74 61 47 36 28 25 23 16 15 14 14 12 12 10 2 2</canonical_bands>
                <polymorphic_bands>229 174 114 92 74 61 47 36 28 25 23 16 15 14 14 12 12 10 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGAAGCGATTTTTGATGTAAC</pcr_primer_p1>
		<pcr_primer_p2>GATGGAACGAGTGAATATGG</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CTAGAAGCGATTTTTGATGTAACATTTGAAGAAAAATGAAATATATTTTGAGATCATCAGAAAAGAAGGCACAAAAATGAAAAAAAAAGAATAAATTATGGGTAAAAAAAGGTCAATCAACAACAGATAACCGCAAAAACTCAAATTCAACGGGGAACAATTTGGGGAAAACGGCTACAGTATGCGGGAGATGATTTTGAATAATTATTCGAAACACGGCCATATTCACTCGTTCCATC</canonical_amplicon>
		<polymorphic_amplicon>CTAGAAGCGATTTTTGATGTAACATTTGAAGAAAAATGAAATATATTTTGAGATCATCAGAAAAGAAGGCARAAAAATGAAAAAAAAAGAATAAATTATGGGTAAAAAAAGGTCAATCAACAACAGATAACCGCAAAAACTCAAATTCAACGGGGAACAATTTGGGGAAAACGGCTACAGTATGCGGGAGATGATTTTGAATAATTATTCGAAACACGGCCATATTCACTCGTTCCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32037</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>84120</contig_pos>
        <strand></strand>
        <context>AATGAAAAAA[A/G]AAGAATAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGAAATATATTTTGAGATCATCAGAAAAGAAGGCACAAAAATGAAAAAA</left_flank>
        <right_flank>AAGAATAAATTATGGGTAAAAAAAGGTCAATCAACAACAGATAACCGCAA</right_flank>
        <qual_score>35</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATGCATCCTTATACTTTCGATTGTATCTAAACTTTTTAAAAATAATAAAAATCCTGAAATTTCGAAATTTGACTCACTTAATTTTAAATTCTTTAAACGCCTTATAAACCGCCTCCGGATGCTCTCTATCGATTTTGATCTCGAAAAATTCGGGATCCTCAAAAGCTGCGAAAACGCCGAGAATTGGGGAAAATGCTAGAAAAATTGCGAAAAATCGCATGGCTGTCATCTGAATTCCTCTTCTACAGTGTTCGGAGAAGCGTTTTAAGGGTGTGCAAGAGGTTTTATGATCGGGGGATCGTAAAACTTTGTTCAGGGGGTTGGAAAGCGTCATATAAATCTTCGGGAAGAAGCATCGAGGTAGGAATTAAAAAAATCAAAAAGGGGTGATATTTTGTGTTTTCTGCAAGTTCTAGAAGCGATTTTTGATGTAACATTTGAAGAAAAATGAAATATATTTTGAGATCATCAGAAAAGAAGGCACAAAAATGAAAAAAAAAGAATAAATTATGGGTAAAAAAAGGTCAATCAACAACAGATAACCGCAAAAACTCAAATTCAACGGGGAACAATTTGGGGAAAACGGCTACAGTATGCGGGAGATGATTTTGAATAATTATTCGAAACACGGCCATATTCACTCGTTCCATCGCCTCCTTCTCGTGCGGCAATCCCTCGTCGATGGCGTTGTCACGAAGCGATTTGTGGTAGATGTCGATGGTGTCTCGCGTCGTGTTTCGGAACTGAAAATTCAAAAAGCTCAAAAAAATTCCTAAATTTTAGAAAAATTTTAGTGAAAAAGCTGAAATTTTTCAAATTTTTCAAAAGATGACATTTTCGAAAAAAAAATTTCGAAATTTTGATTTTACACCTGGTAAGCAGTACCAAAATTTCATTTTACTATTGCCTGGCAGGTGCAAATTTTCGTTTCACACCTGCTAAGCAGTACCAAAATCGGAGAAATCTTGCACTAACTTTTTTACTTTCTGTCCATTTTC</canonical>
            <polymorphic>CGATGCATCCTTATACTTTCGATTGTATCTAAACTTTTTAAAAATAATAAAAATCCTGAAATTTCGAAATTTGACTCACTTAATTTTAAATTCTTTAAACGCCTTATAAACCGCCTCCGGATGCTCTCTATCGATTTTGATCTCGAAAAATTCGGGATCCTCAAAAGCTGCGAAAACGCCGAGAATTGGGGAAAATGCTAGAAAAATTGCGAAAAATCGCATGGCTGTCATCTGAATTCCTCTTCTACAGTGTTCGGAGAAGCGTTTTAAGGGTGTGCAAGAGGTTTTATGATCGGGGGATCGTAAAACTTTGTTCAGGGGGTTGGAAAGCGTCATATAAATCTTCGGGAAGAAGCATCGAGGTAGGAATTAAAAAAATCAAAAAGGGGTGATATTTTGTGTTTTCTGCAAGTTCTAGAAGCGATTTTTGATGTAACATTTGAAGAAAAATGAAATATATTTTGAGATCATCAGAAAAGAAGGCACAAAAATGAAAAAARAAGAATAAATTATGGGTAAAAAAAGGTCAATCAACAACAGATAACCGCAAAAACTCAAATTCAACGGGGAACAATTTGGGGAAAACGGCTACAGTATGCGGGAGATGATTTTGAATAATTATTCGAAACACGGCCATATTCACTCGTTCCATCGCCTCCTTCTCGTGCGGCAATCCCTCGTCGATGGCGTTGTCACGAAGCGATTTGTGGTAGATGTCGATGGTGTCTCGCGTCGTGTTTCGGAACTGAAAATTCAAAAAGCTCAAAAAAATTCCTAAATTTTAGAAAAATTTTAGTGAAAAAGCTGAAATTTTTCAAATTTTTCAAAAGATGACATTTTCGAAAAAAAAATTTCGAAATTTTGATTTTACACCTGGTAAGCAGTACCAAAATTTCATTTTACTATTGCCTGGCAGGTGCAAATTTTCGTTTCACACCTGCTAAGCAGTACCAAAATCGGAGAAATCTTGCACTAACTTTTTTACTTTCTGTCCATTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGAAGCGATTTTTGATGTAAC</pcr_primer_p1>
		<pcr_primer_p2>GATGGAACGAGTGAATATGG</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CTAGAAGCGATTTTTGATGTAACATTTGAAGAAAAATGAAATATATTTTGAGATCATCAGAAAAGAAGGCACAAAAATGAAAAAAAAAGAATAAATTATGGGTAAAAAAAGGTCAATCAACAACAGATAACCGCAAAAACTCAAATTCAACGGGGAACAATTTGGGGAAAACGGCTACAGTATGCGGGAGATGATTTTGAATAATTATTCGAAACACGGCCATATTCACTCGTTCCATC</canonical_amplicon>
		<polymorphic_amplicon>CTAGAAGCGATTTTTGATGTAACATTTGAAGAAAAATGAAATATATTTTGAGATCATCAGAAAAGAAGGCACAAAAATGAAAAAARAAGAATAAATTATGGGTAAAAAAAGGTCAATCAACAACAGATAACCGCAAAAACTCAAATTCAACGGGGAACAATTTGGGGAAAACGGCTACAGTATGCGGGAGATGATTTTGAATAATTATTCGAAACACGGCCATATTCACTCGTTCCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32038</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>84551</contig_pos>
        <strand></strand>
        <context>aaattttcgt[T/G]tcacacctgc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GCAGTACCAAAATTTCATTTTACTATTGCCTGGCAGGTGCAAATTTTCGT</left_flank>
        <right_flank>TCACACCTGCTAAGCAGTACCAAAATCGGAGAAATCTTGCACTAACTTTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTAACATTTGAAGAAAAATGAAATATATTTTGAGATCATCAGAAAAGAAGGCACAAAAATGAAAAAAAAAGAATAAATTATGGGTAAAAAAAGGTCAATCAACAACAGATAACCGCAAAAACTCAAATTCAACGGGGAACAATTTGGGGAAAACGGCTACAGTATGCGGGAGATGATTTTGAATAATTATTCGAAACACGGCCATATTCACTCGTTCCATCGCCTCCTTCTCGTGCGGCAATCCCTCGTCGATGGCGTTGTCACGAAGCGATTTGTGGTAGATGTCGATGGTGTCTCGCGTCGTGTTTCGGAACTGAAAATTCAAAAAGCTCAAAAAAATTCCTAAATTTTAGAAAAATTTTAGTGAAAAAGCTGAAATTTTTCAAATTTTTCAAAAGATGACATTTTCGAAAAAAAAATTTCGAAATTTTGATTTTACACCTGGTAAGCAGTACCAAAATTTCATTTTACTATTGCCTGGCAGGTGCAAATTTTCGTTTCACACCTGCTAAGCAGTACCAAAATCGGAGAAATCTTGCACTAACTTTTTTACTTTCTGTCCATTTTCGATGAAAATACTACAGTTAGATTCCCCGTTCCAAAATGCATCGATTTATATTTAAAAAGTTGTTTAAAAATCAAATTTTTTTTTTGAAAATTTGGCAGTACCAAAAATTAATTTTACACCTGCCAAGCAGTACCAAAATCGGAGAAATTTCGCTCAAACTTTTTTACTTTTTGTCCGTTTTCGATGAAAATAACAAAGTTAGATTCCTTGTTCCAAAATGCATCGATTTATATGAAATTTATTACAAAAAATCCATTTTGCACCTGCTAAGCAGCACCAAAAATTATGTTTTATAGCTAATGACTCACCAAAAAGAACTTCCACACCTCCAGCAACATCAGATACGTCTCATGACACGTGGAATACTTCTCTAAATCACAGATATAACTGAAACGCGGTGGGATCAGGCCTCCCTTGCTGGCCAGATAGAA</canonical>
            <polymorphic>TGTAACATTTGAAGAAAAATGAAATATATTTTGAGATCATCAGAAAAGAAGGCACAAAAATGAAAAAAAAAGAATAAATTATGGGTAAAAAAAGGTCAATCAACAACAGATAACCGCAAAAACTCAAATTCAACGGGGAACAATTTGGGGAAAACGGCTACAGTATGCGGGAGATGATTTTGAATAATTATTCGAAACACGGCCATATTCACTCGTTCCATCGCCTCCTTCTCGTGCGGCAATCCCTCGTCGATGGCGTTGTCACGAAGCGATTTGTGGTAGATGTCGATGGTGTCTCGCGTCGTGTTTCGGAACTGAAAATTCAAAAAGCTCAAAAAAATTCCTAAATTTTAGAAAAATTTTAGTGAAAAAGCTGAAATTTTTCAAATTTTTCAAAAGATGACATTTTCGAAAAAAAAATTTCGAAATTTTGATTTTACACCTGGTAAGCAGTACCAAAATTTCATTTTACTATTGCCTGGCAGGTGCAAATTTTCGTKTCACACCTGCTAAGCAGTACCAAAATCGGAGAAATCTTGCACTAACTTTTTTACTTTCTGTCCATTTTCGATGAAAATACTACAGTTAGATTCCCCGTTCCAAAATGCATCGATTTATATTTAAAAAGTTGTTTAAAAATCAAATTTTTTTTTTGAAAATTTGGCAGTACCAAAAATTAATTTTACACCTGCCAAGCAGTACCAAAATCGGAGAAATTTCGCTCAAACTTTTTTACTTTTTGTCCGTTTTCGATGAAAATAACAAAGTTAGATTCCTTGTTCCAAAATGCATCGATTTATATGAAATTTATTACAAAAAATCCATTTTGCACCTGCTAAGCAGCACCAAAAATTATGTTTTATAGCTAATGACTCACCAAAAAGAACTTCCACACCTCCAGCAACATCAGATACGTCTCATGACACGTGGAATACTTCTCTAAATCACAGATATAACTGAAACGCGGTGGGATCAGGCCTCCCTTGCTGGCCAGATAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTTGATTTTACACCTGGTA</pcr_primer_p1>
		<pcr_primer_p2>CATAATTTTTGGTGCTGCTTA</pcr_primer_p2>
		<pcr_amplicon_size>432</pcr_amplicon_size>
		<canonical_amplicon>AAATTTTGATTTTACACCTGGTAAGCAGTACCAAAATTTCATTTTACTATTGCCTGGCAGGTGCAAATTTTCGTTTCACACCTGCTAAGCAGTACCAAAATCGGAGAAATCTTGCACTAACTTTTTTACTTTCTGTCCATTTTCGATGAAAATACTACAGTTAGATTCCCCGTTCCAAAATGCATCGATTTATATTTAAAAAGTTGTTTAAAAATCAAATTTTTTTTTTGAAAATTTGGCAGTACCAAAAATTAATTTTACACCTGCCAAGCAGTACCAAAATCGGAGAAATTTCGCTCAAACTTTTTTACTTTTTGTCCGTTTTCGATGAAAATAACAAAGTTAGATTCCTTGTTCCAAAATGCATCGATTTATATGAAATTTATTACAAAAAATCCATTTTGCACCTGCTAAGCAGCACCAAAAATTATG</canonical_amplicon>
		<polymorphic_amplicon>AAATTTTGATTTTACACCTGGTAAGCAGTACCAAAATTTCATTTTACTATTGCCTGGCAGGTGCAAATTTTCGTKTCACACCTGCTAAGCAGTACCAAAATCGGAGAAATCTTGCACTAACTTTTTTACTTTCTGTCCATTTTCGATGAAAATACTACAGTTAGATTCCCCGTTCCAAAATGCATCGATTTATATTTAAAAAGTTGTTTAAAAATCAAATTTTTTTTTTGAAAATTTGGCAGTACCAAAAATTAATTTTACACCTGCCAAGCAGTACCAAAATCGGAGAAATTTCGCTCAAACTTTTTTACTTTTTGTCCGTTTTCGATGAAAATAACAAAGTTAGATTCCTTGTTCCAAAATGCATCGATTTATATGAAATTTATTACAAAAAATCCATTTTGCACCTGCTAAGCAGCACCAAAAATTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32039</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>98686</contig_pos>
        <strand></strand>
        <context>ttggaaattt[G/T]ctactgctaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGAGAATAAAATGCCTCCGATTTTGATACTGCTTAGCAACTTGGAAATTT</left_flank>
        <right_flank>CTACTGCTAAGCAGTACCAAAATTCGAAACCTTTTTCAGAAAAAGACCTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTATTTTACTTTACGAACTTTATATCAAATTGAAGCCCTGATTTTTAGCTTTCATTTAAAACAAGAATCAATTTTTAATATTGATTTTAAGCACAGTTATAAGCATCTAAAGTTAAGCGTAGTTCAATTTTGCACCTGCCAAGCAGTAGCAAAATCGATTTTGCTACTGCTGGGCAGGTGCAAATTTCAATATGCTACTGCCGAGCAGTACCAAAATTTGCATATCGCTTCAGAAAAACAACTGTAACTCGCTTAGTTTTTGTCCGAATTTCATGAAACTTATATTTTCTGAATTTTCTGAATTAGCGAAAATTAACAATTTCAAAAAACTAAATTTCTATTTTTGAAATAAATAAATGAAGTTCTATTTCAAAGTTTGATGCCTCTCTTTTTGTTTTTTGCACCTGCTAAGCAGTACCAAATCTTTCAGATTCTTTCAGATCTTTCAGAGAATAAAATGCCTCCGATTTTGATACTGCTTAGCAACTTGGAAATTTGCTACTGCTAAGCAGTACCAAAATTCGAAACCTTTTTCAGAAAAAGACCTGTAGCTCGCTCAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGTAATTGAGTGAACATCAGTTTTTTAATCCCTTGTTTTCTCACATGCTGTACATGTGAAGAGACGATTTATTATCTTCTCAATATTTTTATTTTTTCTATATTTTTTGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTGATGATTAGGAAAAGATGATATTTTGACCATTTATCGTAAAACCTTTGCACAGTCAAGTTTGAGCTAAACTATCTCGGCTCCCACGAGAGATATCAAAAATCTGTCAACTGATAAAAAGTGTTTCTAATATTATGATAAACAATTTATAAGTTGATCACTTTTTGATATCTCTTACAGGGAGCCAGATAAATTGGTTTCATG</canonical>
            <polymorphic>TTTTATTTTACTTTACGAACTTTATATCAAATTGAAGCCCTGATTTTTAGCTTTCATTTAAAACAAGAATCAATTTTTAATATTGATTTTAAGCACAGTTATAAGCATCTAAAGTTAAGCGTAGTTCAATTTTGCACCTGCCAAGCAGTAGCAAAATCGATTTTGCTACTGCTGGGCAGGTGCAAATTTCAATATGCTACTGCCGAGCAGTACCAAAATTTGCATATCGCTTCAGAAAAACAACTGTAACTCGCTTAGTTTTTGTCCGAATTTCATGAAACTTATATTTTCTGAATTTTCTGAATTAGCGAAAATTAACAATTTCAAAAAACTAAATTTCTATTTTTGAAATAAATAAATGAAGTTCTATTTCAAAGTTTGATGCCTCTCTTTTTGTTTTTTGCACCTGCTAAGCAGTACCAAATCTTTCAGATTCTTTCAGATCTTTCAGAGAATAAAATGCCTCCGATTTTGATACTGCTTAGCAACTTGGAAATTTKCTACTGCTAAGCAGTACCAAAATTCGAAACCTTTTTCAGAAAAAGACCTGTAGCTCGCTCAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGTAATTGAGTGAACATCAGTTTTTTAATCCCTTGTTTTCTCACATGCTGTACATGTGAAGAGACGATTTATTATCTTCTCAATATTTTTATTTTTTCTATATTTTTTGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTGATGATTAGGAAAAGATGATATTTTGACCATTTATCGTAAAACCTTTGCACAGTCAAGTTTGAGCTAAACTATCTCGGCTCCCACGAGAGATATCAAAAATCTGTCAACTGATAAAAAGTGTTTCTAATATTATGATAAACAATTTATAAGTTGATCACTTTTTGATATCTCTTACAGGGAGCCAGATAAATTGGTTTCATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAAGCAGTACCAAATCTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>ACAACGTTTTAAGAAGATTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTAAGCAGTACCAAATCTTTCAGATTCTTTCAGATCTTTCAGAGAATAAAATGCCTCCGATTTTGATACTGCTTAGCAACTTGGAAATTTGCTACTGCTAAGCAGTACCAAAATTCGAAACCTTTTTCAGAAAAAGACCTGTAGCTCGCTCAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGT</canonical_amplicon>
		<polymorphic_amplicon>CTAAGCAGTACCAAATCTTTCAGATTCTTTCAGATCTTTCAGAGAATAAAATGCCTCCGATTTTGATACTGCTTAGCAACTTGGAAATTTKCTACTGCTAAGCAGTACCAAAATTCGAAACCTTTTTCAGAAAAAGACCTGTAGCTCGCTCAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32040</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>98779</contig_pos>
        <strand>+</strand>
        <context>ATTGATATTT[G/T]CAGAAYTAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGACCTGTAGCTCGCTCAGTTTTCATCCAATTTTCAAAAATTGATATTT</left_flank>
        <right_flank>CAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACAGTTATAAGCATCTAAAGTTAAGCGTAGTTCAATTTTGCACCTGCCAAGCAGTAGCAAAATCGATTTTGCTACTGCTGGGCAGGTGCAAATTTCAATATGCTACTGCCGAGCAGTACCAAAATTTGCATATCGCTTCAGAAAAACAACTGTAACTCGCTTAGTTTTTGTCCGAATTTCATGAAACTTATATTTTCTGAATTTTCTGAATTAGCGAAAATTAACAATTTCAAAAAACTAAATTTCTATTTTTGAAATAAATAAATGAAGTTCTATTTCAAAGTTTGATGCCTCTCTTTTTGTTTTTTGCACCTGCTAAGCAGTACCAAATCTTTCAGATTCTTTCAGATCTTTCAGAGAATAAAATGCCTCCGATTTTGATACTGCTTAGCAACTTGGAAATTTGCTACTGCTAAGCAGTACCAAAATTCGAAACCTTTTTCAGAAAAAGACCTGTAGCTCGCTCAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGTAATTGAGTGAACATCAGTTTTTTAATCCCTTGTTTTCTCACATGCTGTACATGTGAAGAGACGATTTATTATCTTCTCAATATTTTTATTTTTTCTATATTTTTTGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTGATGATTAGGAAAAGATGATATTTTGACCATTTATCGTAAAACCTTTGCACAGTCAAGTTTGAGCTAAACTATCTCGGCTCCCACGAGAGATATCAAAAATCTGTCAACTGATAAAAAGTGTTTCTAATATTATGATAAACAATTTATAAGTTGATCACTTTTTGATATCTCTTACAGGGAGCCAGATAAATTGGTTTCATGTAAAAAACAAGAAAGCCCTTCTATTACAGGTTTTACGTATTTTTTTTCGGATTTCTTCAACAAGAAAAAACAAATTTAAAAGTTTAAAAAACC</canonical>
            <polymorphic>CACAGTTATAAGCATCTAAAGTTAAGCGTAGTTCAATTTTGCACCTGCCAAGCAGTAGCAAAATCGATTTTGCTACTGCTGGGCAGGTGCAAATTTCAATATGCTACTGCCGAGCAGTACCAAAATTTGCATATCGCTTCAGAAAAACAACTGTAACTCGCTTAGTTTTTGTCCGAATTTCATGAAACTTATATTTTCTGAATTTTCTGAATTAGCGAAAATTAACAATTTCAAAAAACTAAATTTCTATTTTTGAAATAAATAAATGAAGTTCTATTTCAAAGTTTGATGCCTCTCTTTTTGTTTTTTGCACCTGCTAAGCAGTACCAAATCTTTCAGATTCTTTCAGATCTTTCAGAGAATAAAATGCCTCCGATTTTGATACTGCTTAGCAACTTGGAAATTTGCTACTGCTAAGCAGTACCAAAATTCGAAACCTTTTTCAGAAAAAGACCTGTAGCTCGCTCAGTTTTCATCCAATTTTCAAAAATTGATATTTKCAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGTAATTGAGTGAACATCAGTTTTTTAATCCCTTGTTTTCTCACATGCTGTACATGTGAAGAGACGATTTATTATCTTCTCAATATTTTTATTTTTTCTATATTTTTTGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTGATGATTAGGAAAAGATGATATTTTGACCATTTATCGTAAAACCTTTGCACAGTCAAGTTTGAGCTAAACTATCTCGGCTCCCACGAGAGATATCAAAAATCTGTCAACTGATAAAAAGTGTTTCTAATATTATGATAAACAATTTATAAGTTGATCACTTTTTGATATCTCTTACAGGGAGCCAGATAAATTGGTTTCATGTAAAAAACAAGAAAGCCCTTCTATTACAGGTTTTACGTATTTTTTTTCGGATTTCTTCAACAAGAAAAAACAAATTTAAAAGTTTAAAAAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>247 190 181 168 85 48 41 40</canonical_bands>
                <polymorphic_bands>358 247 181 85 48 41 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAAGCAGTACCAAATCTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>ACAACGTTTTAAGAAGATTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTAAGCAGTACCAAATCTTTCAGATTCTTTCAGATCTTTCAGAGAATAAAATGCCTCCGATTTTGATACTGCTTAGCAACTTGGAAATTTGCTACTGCTAAGCAGTACCAAAATTCGAAACCTTTTTCAGAAAAAGACCTGTAGCTCGCTCAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGT</canonical_amplicon>
		<polymorphic_amplicon>CTAAGCAGTACCAAATCTTTCAGATTCTTTCAGATCTTTCAGAGAATAAAATGCCTCCGATTTTGATACTGCTTAGCAACTTGGAAATTTGCTACTGCTAAGCAGTACCAAAATTCGAAACCTTTTTCAGAAAAAGACCTGTAGCTCGCTCAGTTTTCATCCAATTTTCAAAAATTGATATTTKCAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32041</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>98785</contig_pos>
        <strand>+</strand>
        <context>ATTTKCAGAA[C/T]TAGCCTTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTAGCTCGCTCAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAA</left_flank>
        <right_flank>TAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATAAGCATCTAAAGTTAAGCGTAGTTCAATTTTGCACCTGCCAAGCAGTAGCAAAATCGATTTTGCTACTGCTGGGCAGGTGCAAATTTCAATATGCTACTGCCGAGCAGTACCAAAATTTGCATATCGCTTCAGAAAAACAACTGTAACTCGCTTAGTTTTTGTCCGAATTTCATGAAACTTATATTTTCTGAATTTTCTGAATTAGCGAAAATTAACAATTTCAAAAAACTAAATTTCTATTTTTGAAATAAATAAATGAAGTTCTATTTCAAAGTTTGATGCCTCTCTTTTTGTTTTTTGCACCTGCTAAGCAGTACCAAATCTTTCAGATTCTTTCAGATCTTTCAGAGAATAAAATGCCTCCGATTTTGATACTGCTTAGCAACTTGGAAATTTGCTACTGCTAAGCAGTACCAAAATTCGAAACCTTTTTCAGAAAAAGACCTGTAGCTCGCTCAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGTAATTGAGTGAACATCAGTTTTTTAATCCCTTGTTTTCTCACATGCTGTACATGTGAAGAGACGATTTATTATCTTCTCAATATTTTTATTTTTTCTATATTTTTTGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTGATGATTAGGAAAAGATGATATTTTGACCATTTATCGTAAAACCTTTGCACAGTCAAGTTTGAGCTAAACTATCTCGGCTCCCACGAGAGATATCAAAAATCTGTCAACTGATAAAAAGTGTTTCTAATATTATGATAAACAATTTATAAGTTGATCACTTTTTGATATCTCTTACAGGGAGCCAGATAAATTGGTTTCATGTAAAAAACAAGAAAGCCCTTCTATTACAGGTTTTACGTATTTTTTTTCGGATTTCTTCAACAAGAAAAAACAAATTTAAAAGTTTAAAAAACCATTTAT</canonical>
            <polymorphic>TATAAGCATCTAAAGTTAAGCGTAGTTCAATTTTGCACCTGCCAAGCAGTAGCAAAATCGATTTTGCTACTGCTGGGCAGGTGCAAATTTCAATATGCTACTGCCGAGCAGTACCAAAATTTGCATATCGCTTCAGAAAAACAACTGTAACTCGCTTAGTTTTTGTCCGAATTTCATGAAACTTATATTTTCTGAATTTTCTGAATTAGCGAAAATTAACAATTTCAAAAAACTAAATTTCTATTTTTGAAATAAATAAATGAAGTTCTATTTCAAAGTTTGATGCCTCTCTTTTTGTTTTTTGCACCTGCTAAGCAGTACCAAATCTTTCAGATTCTTTCAGATCTTTCAGAGAATAAAATGCCTCCGATTTTGATACTGCTTAGCAACTTGGAAATTTGCTACTGCTAAGCAGTACCAAAATTCGAAACCTTTTTCAGAAAAAGACCTGTAGCTCGCTCAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAAYTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGTAATTGAGTGAACATCAGTTTTTTAATCCCTTGTTTTCTCACATGCTGTACATGTGAAGAGACGATTTATTATCTTCTCAATATTTTTATTTTTTCTATATTTTTTGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTGATGATTAGGAAAAGATGATATTTTGACCATTTATCGTAAAACCTTTGCACAGTCAAGTTTGAGCTAAACTATCTCGGCTCCCACGAGAGATATCAAAAATCTGTCAACTGATAAAAAGTGTTTCTAATATTATGATAAACAATTTATAAGTTGATCACTTTTTGATATCTCTTACAGGGAGCCAGATAAATTGGTTTCATGTAAAAAACAAGAAAGCCCTTCTATTACAGGTTTTACGTATTTTTTTTCGGATTTCTTCAACAAGAAAAAACAAATTTAAAAGTTTAAAAAACCATTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 313 187</canonical_bands>
                <polymorphic_bands>687 313</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAAGCAGTACCAAATCTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>ACAACGTTTTAAGAAGATTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTAAGCAGTACCAAATCTTTCAGATTCTTTCAGATCTTTCAGAGAATAAAATGCCTCCGATTTTGATACTGCTTAGCAACTTGGAAATTTGCTACTGCTAAGCAGTACCAAAATTCGAAACCTTTTTCAGAAAAAGACCTGTAGCTCGCTCAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGT</canonical_amplicon>
		<polymorphic_amplicon>CTAAGCAGTACCAAATCTTTCAGATTCTTTCAGATCTTTCAGAGAATAAAATGCCTCCGATTTTGATACTGCTTAGCAACTTGGAAATTTGCTACTGCTAAGCAGTACCAAAATTCGAAACCTTTTTCAGAAAAAGACCTGTAGCTCGCTCAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAAYTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32042</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>98809</contig_pos>
        <strand>+</strand>
        <context>CGGTTTGAAT[G/T]AATCTAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAAT</left_flank>
        <right_flank>AATCTAAATTTGAAATCTTCTTAAAACGTTGTAATTGAGTGAACATCAGT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCAATTTTGCACCTGCCAAGCAGTAGCAAAATCGATTTTGCTACTGCTGGGCAGGTGCAAATTTCAATATGCTACTGCCGAGCAGTACCAAAATTTGCATATCGCTTCAGAAAAACAACTGTAACTCGCTTAGTTTTTGTCCGAATTTCATGAAACTTATATTTTCTGAATTTTCTGAATTAGCGAAAATTAACAATTTCAAAAAACTAAATTTCTATTTTTGAAATAAATAAATGAAGTTCTATTTCAAAGTTTGATGCCTCTCTTTTTGTTTTTTGCACCTGCTAAGCAGTACCAAATCTTTCAGATTCTTTCAGATCTTTCAGAGAATAAAATGCCTCCGATTTTGATACTGCTTAGCAACTTGGAAATTTGCTACTGCTAAGCAGTACCAAAATTCGAAACCTTTTTCAGAAAAAGACCTGTAGCTCGCTCAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGTAATTGAGTGAACATCAGTTTTTTAATCCCTTGTTTTCTCACATGCTGTACATGTGAAGAGACGATTTATTATCTTCTCAATATTTTTATTTTTTCTATATTTTTTGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTGATGATTAGGAAAAGATGATATTTTGACCATTTATCGTAAAACCTTTGCACAGTCAAGTTTGAGCTAAACTATCTCGGCTCCCACGAGAGATATCAAAAATCTGTCAACTGATAAAAAGTGTTTCTAATATTATGATAAACAATTTATAAGTTGATCACTTTTTGATATCTCTTACAGGGAGCCAGATAAATTGGTTTCATGTAAAAAACAAGAAAGCCCTTCTATTACAGGTTTTACGTATTTTTTTTCGGATTTCTTCAACAAGAAAAAACAAATTTAAAAGTTTAAAAAACCATTTATCCAGTATTATCAATCATCGGCAAT</canonical>
            <polymorphic>GTTCAATTTTGCACCTGCCAAGCAGTAGCAAAATCGATTTTGCTACTGCTGGGCAGGTGCAAATTTCAATATGCTACTGCCGAGCAGTACCAAAATTTGCATATCGCTTCAGAAAAACAACTGTAACTCGCTTAGTTTTTGTCCGAATTTCATGAAACTTATATTTTCTGAATTTTCTGAATTAGCGAAAATTAACAATTTCAAAAAACTAAATTTCTATTTTTGAAATAAATAAATGAAGTTCTATTTCAAAGTTTGATGCCTCTCTTTTTGTTTTTTGCACCTGCTAAGCAGTACCAAATCTTTCAGATTCTTTCAGATCTTTCAGAGAATAAAATGCCTCCGATTTTGATACTGCTTAGCAACTTGGAAATTTGCTACTGCTAAGCAGTACCAAAATTCGAAACCTTTTTCAGAAAAAGACCTGTAGCTCGCTCAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAATKAATCTAAATTTGAAATCTTCTTAAAACGTTGTAATTGAGTGAACATCAGTTTTTTAATCCCTTGTTTTCTCACATGCTGTACATGTGAAGAGACGATTTATTATCTTCTCAATATTTTTATTTTTTCTATATTTTTTGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTGATGATTAGGAAAAGATGATATTTTGACCATTTATCGTAAAACCTTTGCACAGTCAAGTTTGAGCTAAACTATCTCGGCTCCCACGAGAGATATCAAAAATCTGTCAACTGATAAAAAGTGTTTCTAATATTATGATAAACAATTTATAAGTTGATCACTTTTTGATATCTCTTACAGGGAGCCAGATAAATTGGTTTCATGTAAAAAACAAGAAAGCCCTTCTATTACAGGTTTTACGTATTTTTTTTCGGATTTCTTCAACAAGAAAAAACAAATTTAAAAGTTTAAAAAACCATTTATCCAGTATTATCAATCATCGGCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>307 286 192 113 39 33 22 8</canonical_bands>
                <polymorphic_bands>329 286 192 113 39 33 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>160 145 139 85 57 52 51 51 48 38 32 26 26 25 15 10 10 10 9 7 4</canonical_bands>
                <polymorphic_bands>160 145 139 85 57 52 51 51 48 48 32 26 26 25 15 10 10 9 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTTCATCCAATTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>CCTAATCATCAATTTTTAACTAGACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGTAATTGAGTGAACATCAGTTTTTTAATCCCTTGTTTTCTCACATGCTGTACATGTGAAGAGACGATTTATTATCTTCTCAATATTTTTATTTTTTCTATATTTTTTGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTGATGATTAGG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAATKAATCTAAATTTGAAATCTTCTTAAAACGTTGTAATTGAGTGAACATCAGTTTTTTAATCCCTTGTTTTCTCACATGCTGTACATGTGAAGAGACGATTTATTATCTTCTCAATATTTTTATTTTTTCTATATTTTTTGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTGATGATTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32043</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>98883</contig_pos>
        <strand>+</strand>
        <context>GTTTTCTCAC[A/G]TGCTGTACAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACGTTGTAATTGAGTGAACATCAGTTTTTTAATCCCTTGTTTTCTCAC</left_flank>
        <right_flank>TGCTGTACATGTGAAGAGACGATTTATTATCTTCTCAATATTTTTATTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTGCCGAGCAGTACCAAAATTTGCATATCGCTTCAGAAAAACAACTGTAACTCGCTTAGTTTTTGTCCGAATTTCATGAAACTTATATTTTCTGAATTTTCTGAATTAGCGAAAATTAACAATTTCAAAAAACTAAATTTCTATTTTTGAAATAAATAAATGAAGTTCTATTTCAAAGTTTGATGCCTCTCTTTTTGTTTTTTGCACCTGCTAAGCAGTACCAAATCTTTCAGATTCTTTCAGATCTTTCAGAGAATAAAATGCCTCCGATTTTGATACTGCTTAGCAACTTGGAAATTTGCTACTGCTAAGCAGTACCAAAATTCGAAACCTTTTTCAGAAAAAGACCTGTAGCTCGCTCAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGTAATTGAGTGAACATCAGTTTTTTAATCCCTTGTTTTCTCACATGCTGTACATGTGAAGAGACGATTTATTATCTTCTCAATATTTTTATTTTTTCTATATTTTTTGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTGATGATTAGGAAAAGATGATATTTTGACCATTTATCGTAAAACCTTTGCACAGTCAAGTTTGAGCTAAACTATCTCGGCTCCCACGAGAGATATCAAAAATCTGTCAACTGATAAAAAGTGTTTCTAATATTATGATAAACAATTTATAAGTTGATCACTTTTTGATATCTCTTACAGGGAGCCAGATAAATTGGTTTCATGTAAAAAACAAGAAAGCCCTTCTATTACAGGTTTTACGTATTTTTTTTCGGATTTCTTCAACAAGAAAAAACAAATTTAAAAGTTTAAAAAACCATTTATCCAGTATTATCAATCATCGGCAATAGTCGAAATAAGGCAATTCAAAGTACCAAAAAGTAAGAAACAAGTTTTTAAAAAATTAGCAAAAAAATTGAAAA</canonical>
            <polymorphic>TACTGCCGAGCAGTACCAAAATTTGCATATCGCTTCAGAAAAACAACTGTAACTCGCTTAGTTTTTGTCCGAATTTCATGAAACTTATATTTTCTGAATTTTCTGAATTAGCGAAAATTAACAATTTCAAAAAACTAAATTTCTATTTTTGAAATAAATAAATGAAGTTCTATTTCAAAGTTTGATGCCTCTCTTTTTGTTTTTTGCACCTGCTAAGCAGTACCAAATCTTTCAGATTCTTTCAGATCTTTCAGAGAATAAAATGCCTCCGATTTTGATACTGCTTAGCAACTTGGAAATTTGCTACTGCTAAGCAGTACCAAAATTCGAAACCTTTTTCAGAAAAAGACCTGTAGCTCGCTCAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGTAATTGAGTGAACATCAGTTTTTTAATCCCTTGTTTTCTCACRTGCTGTACATGTGAAGAGACGATTTATTATCTTCTCAATATTTTTATTTTTTCTATATTTTTTGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTGATGATTAGGAAAAGATGATATTTTGACCATTTATCGTAAAACCTTTGCACAGTCAAGTTTGAGCTAAACTATCTCGGCTCCCACGAGAGATATCAAAAATCTGTCAACTGATAAAAAGTGTTTCTAATATTATGATAAACAATTTATAAGTTGATCACTTTTTGATATCTCTTACAGGGAGCCAGATAAATTGGTTTCATGTAAAAAACAAGAAAGCCCTTCTATTACAGGTTTTACGTATTTTTTTTCGGATTTCTTCAACAAGAAAAAACAAATTTAAAAGTTTAAAAAACCATTTATCCAGTATTATCAATCATCGGCAATAGTCGAAATAAGGCAATTCAAAGTACCAAAAAGTAAGAAACAAGTTTTTAAAAAATTAGCAAAAAAATTGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>502 489 9</canonical_bands>
                <polymorphic_bands>511 489</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>422 292 200 77 9</canonical_bands>
                <polymorphic_bands>431 292 200 77</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTTCATCCAATTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>CCTAATCATCAATTTTTAACTAGACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGTAATTGAGTGAACATCAGTTTTTTAATCCCTTGTTTTCTCACATGCTGTACATGTGAAGAGACGATTTATTATCTTCTCAATATTTTTATTTTTTCTATATTTTTTGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTGATGATTAGG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGTAATTGAGTGAACATCAGTTTTTTAATCCCTTGTTTTCTCACRTGCTGTACATGTGAAGAGACGATTTATTATCTTCTCAATATTTTTATTTTTTCTATATTTTTTGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTGATGATTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32044</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>98904</contig_pos>
        <strand>+</strand>
        <context>GTGAAGAGAC[C/T]ATTTATTATC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCAGTTTTTTAATCCCTTGTTTTCTCACATGCTGTACATGTGAAGAGAC</left_flank>
        <right_flank>ATTTATTATCTTCTCAATATTTTTATTTTTTCTATATTTTTTGCAAAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGCATATCGCTTCAGAAAAACAACTGTAACTCGCTTAGTTTTTGTCCGAATTTCATGAAACTTATATTTTCTGAATTTTCTGAATTAGCGAAAATTAACAATTTCAAAAAACTAAATTTCTATTTTTGAAATAAATAAATGAAGTTCTATTTCAAAGTTTGATGCCTCTCTTTTTGTTTTTTGCACCTGCTAAGCAGTACCAAATCTTTCAGATTCTTTCAGATCTTTCAGAGAATAAAATGCCTCCGATTTTGATACTGCTTAGCAACTTGGAAATTTGCTACTGCTAAGCAGTACCAAAATTCGAAACCTTTTTCAGAAAAAGACCTGTAGCTCGCTCAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGTAATTGAGTGAACATCAGTTTTTTAATCCCTTGTTTTCTCACATGCTGTACATGTGAAGAGACGATTTATTATCTTCTCAATATTTTTATTTTTTCTATATTTTTTGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTGATGATTAGGAAAAGATGATATTTTGACCATTTATCGTAAAACCTTTGCACAGTCAAGTTTGAGCTAAACTATCTCGGCTCCCACGAGAGATATCAAAAATCTGTCAACTGATAAAAAGTGTTTCTAATATTATGATAAACAATTTATAAGTTGATCACTTTTTGATATCTCTTACAGGGAGCCAGATAAATTGGTTTCATGTAAAAAACAAGAAAGCCCTTCTATTACAGGTTTTACGTATTTTTTTTCGGATTTCTTCAACAAGAAAAAACAAATTTAAAAGTTTAAAAAACCATTTATCCAGTATTATCAATCATCGGCAATAGTCGAAATAAGGCAATTCAAAGTACCAAAAAGTAAGAAACAAGTTTTTAAAAAATTAGCAAAAAAATTGAAAAGATCCAGTTTCATTCTTGGAA</canonical>
            <polymorphic>TTTGCATATCGCTTCAGAAAAACAACTGTAACTCGCTTAGTTTTTGTCCGAATTTCATGAAACTTATATTTTCTGAATTTTCTGAATTAGCGAAAATTAACAATTTCAAAAAACTAAATTTCTATTTTTGAAATAAATAAATGAAGTTCTATTTCAAAGTTTGATGCCTCTCTTTTTGTTTTTTGCACCTGCTAAGCAGTACCAAATCTTTCAGATTCTTTCAGATCTTTCAGAGAATAAAATGCCTCCGATTTTGATACTGCTTAGCAACTTGGAAATTTGCTACTGCTAAGCAGTACCAAAATTCGAAACCTTTTTCAGAAAAAGACCTGTAGCTCGCTCAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGTAATTGAGTGAACATCAGTTTTTTAATCCCTTGTTTTCTCACATGCTGTACATGTGAAGAGACYATTTATTATCTTCTCAATATTTTTATTTTTTCTATATTTTTTGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTGATGATTAGGAAAAGATGATATTTTGACCATTTATCGTAAAACCTTTGCACAGTCAAGTTTGAGCTAAACTATCTCGGCTCCCACGAGAGATATCAAAAATCTGTCAACTGATAAAAAGTGTTTCTAATATTATGATAAACAATTTATAAGTTGATCACTTTTTGATATCTCTTACAGGGAGCCAGATAAATTGGTTTCATGTAAAAAACAAGAAAGCCCTTCTATTACAGGTTTTACGTATTTTTTTTCGGATTTCTTCAACAAGAAAAAACAAATTTAAAAGTTTAAAAAACCATTTATCCAGTATTATCAATCATCGGCAATAGTCGAAATAAGGCAATTCAAAGTACCAAAAAGTAAGAAACAAGTTTTTAAAAAATTAGCAAAAAAATTGAAAAGATCCAGTTTCATTCTTGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTTCATCCAATTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>CCTAATCATCAATTTTTAACTAGACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGTAATTGAGTGAACATCAGTTTTTTAATCCCTTGTTTTCTCACATGCTGTACATGTGAAGAGACGATTTATTATCTTCTCAATATTTTTATTTTTTCTATATTTTTTGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTGATGATTAGG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGTAATTGAGTGAACATCAGTTTTTTAATCCCTTGTTTTCTCACATGCTGTACATGTGAAGAGACYATTTATTATCTTCTCAATATTTTTATTTTTTCTATATTTTTTGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTGATGATTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32045</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>98917</contig_pos>
        <strand>+</strand>
        <context>TTATTATCTT[A/C]TCAATATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCCTTGTTTTCTCACATGCTGTACATGTGAAGAGACGATTTATTATCTT</left_flank>
        <right_flank>TCAATATTTTTATTTTTTCTATATTTTTTGCAAAGAAAGATGATAAAAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGAAAAACAACTGTAACTCGCTTAGTTTTTGTCCGAATTTCATGAAACTTATATTTTCTGAATTTTCTGAATTAGCGAAAATTAACAATTTCAAAAAACTAAATTTCTATTTTTGAAATAAATAAATGAAGTTCTATTTCAAAGTTTGATGCCTCTCTTTTTGTTTTTTGCACCTGCTAAGCAGTACCAAATCTTTCAGATTCTTTCAGATCTTTCAGAGAATAAAATGCCTCCGATTTTGATACTGCTTAGCAACTTGGAAATTTGCTACTGCTAAGCAGTACCAAAATTCGAAACCTTTTTCAGAAAAAGACCTGTAGCTCGCTCAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGTAATTGAGTGAACATCAGTTTTTTAATCCCTTGTTTTCTCACATGCTGTACATGTGAAGAGACGATTTATTATCTTCTCAATATTTTTATTTTTTCTATATTTTTTGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTGATGATTAGGAAAAGATGATATTTTGACCATTTATCGTAAAACCTTTGCACAGTCAAGTTTGAGCTAAACTATCTCGGCTCCCACGAGAGATATCAAAAATCTGTCAACTGATAAAAAGTGTTTCTAATATTATGATAAACAATTTATAAGTTGATCACTTTTTGATATCTCTTACAGGGAGCCAGATAAATTGGTTTCATGTAAAAAACAAGAAAGCCCTTCTATTACAGGTTTTACGTATTTTTTTTCGGATTTCTTCAACAAGAAAAAACAAATTTAAAAGTTTAAAAAACCATTTATCCAGTATTATCAATCATCGGCAATAGTCGAAATAAGGCAATTCAAAGTACCAAAAAGTAAGAAACAAGTTTTTAAAAAATTAGCAAAAAAATTGAAAAGATCCAGTTTCATTCTTGGAATTCAGGTCCACGA</canonical>
            <polymorphic>TCAGAAAAACAACTGTAACTCGCTTAGTTTTTGTCCGAATTTCATGAAACTTATATTTTCTGAATTTTCTGAATTAGCGAAAATTAACAATTTCAAAAAACTAAATTTCTATTTTTGAAATAAATAAATGAAGTTCTATTTCAAAGTTTGATGCCTCTCTTTTTGTTTTTTGCACCTGCTAAGCAGTACCAAATCTTTCAGATTCTTTCAGATCTTTCAGAGAATAAAATGCCTCCGATTTTGATACTGCTTAGCAACTTGGAAATTTGCTACTGCTAAGCAGTACCAAAATTCGAAACCTTTTTCAGAAAAAGACCTGTAGCTCGCTCAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGTAATTGAGTGAACATCAGTTTTTTAATCCCTTGTTTTCTCACATGCTGTACATGTGAAGAGACGATTTATTATCTTMTCAATATTTTTATTTTTTCTATATTTTTTGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTGATGATTAGGAAAAGATGATATTTTGACCATTTATCGTAAAACCTTTGCACAGTCAAGTTTGAGCTAAACTATCTCGGCTCCCACGAGAGATATCAAAAATCTGTCAACTGATAAAAAGTGTTTCTAATATTATGATAAACAATTTATAAGTTGATCACTTTTTGATATCTCTTACAGGGAGCCAGATAAATTGGTTTCATGTAAAAAACAAGAAAGCCCTTCTATTACAGGTTTTACGTATTTTTTTTCGGATTTCTTCAACAAGAAAAAACAAATTTAAAAGTTTAAAAAACCATTTATCCAGTATTATCAATCATCGGCAATAGTCGAAATAAGGCAATTCAAAGTACCAAAAAGTAAGAAACAAGTTTTTAAAAAATTAGCAAAAAAATTGAAAAGATCCAGTTTCATTCTTGGAATTCAGGTCCACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTTCATCCAATTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>CCTAATCATCAATTTTTAACTAGACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGTAATTGAGTGAACATCAGTTTTTTAATCCCTTGTTTTCTCACATGCTGTACATGTGAAGAGACGATTTATTATCTTCTCAATATTTTTATTTTTTCTATATTTTTTGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTGATGATTAGG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGTAATTGAGTGAACATCAGTTTTTTAATCCCTTGTTTTCTCACATGCTGTACATGTGAAGAGACGATTTATTATCTTMTCAATATTTTTATTTTTTCTATATTTTTTGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTGATGATTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32046</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>98935</contig_pos>
        <strand></strand>
        <context>TTTTATTTTT[T/C]CTATATTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCTGTACATGTGAAGAGACGATTTATTATCTTCTCAATATTTTTATTTTT</left_flank>
        <right_flank>CTATATTTTTTGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGCTTAGTTTTTGTCCGAATTTCATGAAACTTATATTTTCTGAATTTTCTGAATTAGCGAAAATTAACAATTTCAAAAAACTAAATTTCTATTTTTGAAATAAATAAATGAAGTTCTATTTCAAAGTTTGATGCCTCTCTTTTTGTTTTTTGCACCTGCTAAGCAGTACCAAATCTTTCAGATTCTTTCAGATCTTTCAGAGAATAAAATGCCTCCGATTTTGATACTGCTTAGCAACTTGGAAATTTGCTACTGCTAAGCAGTACCAAAATTCGAAACCTTTTTCAGAAAAAGACCTGTAGCTCGCTCAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGTAATTGAGTGAACATCAGTTTTTTAATCCCTTGTTTTCTCACATGCTGTACATGTGAAGAGACGATTTATTATCTTCTCAATATTTTTATTTTTTCTATATTTTTTGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTGATGATTAGGAAAAGATGATATTTTGACCATTTATCGTAAAACCTTTGCACAGTCAAGTTTGAGCTAAACTATCTCGGCTCCCACGAGAGATATCAAAAATCTGTCAACTGATAAAAAGTGTTTCTAATATTATGATAAACAATTTATAAGTTGATCACTTTTTGATATCTCTTACAGGGAGCCAGATAAATTGGTTTCATGTAAAAAACAAGAAAGCCCTTCTATTACAGGTTTTACGTATTTTTTTTCGGATTTCTTCAACAAGAAAAAACAAATTTAAAAGTTTAAAAAACCATTTATCCAGTATTATCAATCATCGGCAATAGTCGAAATAAGGCAATTCAAAGTACCAAAAAGTAAGAAACAAGTTTTTAAAAAATTAGCAAAAAAATTGAAAAGATCCAGTTTCATTCTTGGAATTCAGGTCCACGAGAAAAAAAAGTACCCTTA</canonical>
            <polymorphic>CTCGCTTAGTTTTTGTCCGAATTTCATGAAACTTATATTTTCTGAATTTTCTGAATTAGCGAAAATTAACAATTTCAAAAAACTAAATTTCTATTTTTGAAATAAATAAATGAAGTTCTATTTCAAAGTTTGATGCCTCTCTTTTTGTTTTTTGCACCTGCTAAGCAGTACCAAATCTTTCAGATTCTTTCAGATCTTTCAGAGAATAAAATGCCTCCGATTTTGATACTGCTTAGCAACTTGGAAATTTGCTACTGCTAAGCAGTACCAAAATTCGAAACCTTTTTCAGAAAAAGACCTGTAGCTCGCTCAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGTAATTGAGTGAACATCAGTTTTTTAATCCCTTGTTTTCTCACATGCTGTACATGTGAAGAGACGATTTATTATCTTCTCAATATTTTTATTTTTYCTATATTTTTTGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTGATGATTAGGAAAAGATGATATTTTGACCATTTATCGTAAAACCTTTGCACAGTCAAGTTTGAGCTAAACTATCTCGGCTCCCACGAGAGATATCAAAAATCTGTCAACTGATAAAAAGTGTTTCTAATATTATGATAAACAATTTATAAGTTGATCACTTTTTGATATCTCTTACAGGGAGCCAGATAAATTGGTTTCATGTAAAAAACAAGAAAGCCCTTCTATTACAGGTTTTACGTATTTTTTTTCGGATTTCTTCAACAAGAAAAAACAAATTTAAAAGTTTAAAAAACCATTTATCCAGTATTATCAATCATCGGCAATAGTCGAAATAAGGCAATTCAAAGTACCAAAAAGTAAGAAACAAGTTTTTAAAAAATTAGCAAAAAAATTGAAAAGATCCAGTTTCATTCTTGGAATTCAGGTCCACGAGAAAAAAAAGTACCCTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTTCATCCAATTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>CCTAATCATCAATTTTTAACTAGACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGTAATTGAGTGAACATCAGTTTTTTAATCCCTTGTTTTCTCACATGCTGTACATGTGAAGAGACGATTTATTATCTTCTCAATATTTTTATTTTTTCTATATTTTTTGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTGATGATTAGG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGTAATTGAGTGAACATCAGTTTTTTAATCCCTTGTTTTCTCACATGCTGTACATGTGAAGAGACGATTTATTATCTTCTCAATATTTTTATTTTTYCTATATTTTTTGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTGATGATTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32047</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>99014</contig_pos>
        <strand>+</strand>
        <context>TATTTTGACC[A/G]TTTATCGTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATCTGTCTAGTTAAAAATTGATGATTAGGAAAAGATGATATTTTGACC</left_flank>
        <right_flank>TTTATCGTAAAACCTTTGCACAGTCAAGTTTGAGCTAAACTATCTCGGCT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTAAATTTCTATTTTTGAAATAAATAAATGAAGTTCTATTTCAAAGTTTGATGCCTCTCTTTTTGTTTTTTGCACCTGCTAAGCAGTACCAAATCTTTCAGATTCTTTCAGATCTTTCAGAGAATAAAATGCCTCCGATTTTGATACTGCTTAGCAACTTGGAAATTTGCTACTGCTAAGCAGTACCAAAATTCGAAACCTTTTTCAGAAAAAGACCTGTAGCTCGCTCAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGTAATTGAGTGAACATCAGTTTTTTAATCCCTTGTTTTCTCACATGCTGTACATGTGAAGAGACGATTTATTATCTTCTCAATATTTTTATTTTTTCTATATTTTTTGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTGATGATTAGGAAAAGATGATATTTTGACCATTTATCGTAAAACCTTTGCACAGTCAAGTTTGAGCTAAACTATCTCGGCTCCCACGAGAGATATCAAAAATCTGTCAACTGATAAAAAGTGTTTCTAATATTATGATAAACAATTTATAAGTTGATCACTTTTTGATATCTCTTACAGGGAGCCAGATAAATTGGTTTCATGTAAAAAACAAGAAAGCCCTTCTATTACAGGTTTTACGTATTTTTTTTCGGATTTCTTCAACAAGAAAAAACAAATTTAAAAGTTTAAAAAACCATTTATCCAGTATTATCAATCATCGGCAATAGTCGAAATAAGGCAATTCAAAGTACCAAAAAGTAAGAAACAAGTTTTTAAAAAATTAGCAAAAAAATTGAAAAGATCCAGTTTCATTCTTGGAATTCAGGTCCACGAGAAAAAAAAGTACCCTTAAGTGTCAATTCGAAAAAAAAAGAAAAACAGTATAACCTAAGAATGAGCAATTTTTAGACATAGTAATTAATTTTTAAAT</canonical>
            <polymorphic>AAACTAAATTTCTATTTTTGAAATAAATAAATGAAGTTCTATTTCAAAGTTTGATGCCTCTCTTTTTGTTTTTTGCACCTGCTAAGCAGTACCAAATCTTTCAGATTCTTTCAGATCTTTCAGAGAATAAAATGCCTCCGATTTTGATACTGCTTAGCAACTTGGAAATTTGCTACTGCTAAGCAGTACCAAAATTCGAAACCTTTTTCAGAAAAAGACCTGTAGCTCGCTCAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGTAATTGAGTGAACATCAGTTTTTTAATCCCTTGTTTTCTCACATGCTGTACATGTGAAGAGACGATTTATTATCTTCTCAATATTTTTATTTTTTCTATATTTTTTGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTGATGATTAGGAAAAGATGATATTTTGACCRTTTATCGTAAAACCTTTGCACAGTCAAGTTTGAGCTAAACTATCTCGGCTCCCACGAGAGATATCAAAAATCTGTCAACTGATAAAAAGTGTTTCTAATATTATGATAAACAATTTATAAGTTGATCACTTTTTGATATCTCTTACAGGGAGCCAGATAAATTGGTTTCATGTAAAAAACAAGAAAGCCCTTCTATTACAGGTTTTACGTATTTTTTTTCGGATTTCTTCAACAAGAAAAAACAAATTTAAAAGTTTAAAAAACCATTTATCCAGTATTATCAATCATCGGCAATAGTCGAAATAAGGCAATTCAAAGTACCAAAAAGTAAGAAACAAGTTTTTAAAAAATTAGCAAAAAAATTGAAAAGATCCAGTTTCATTCTTGGAATTCAGGTCCACGAGAAAAAAAAGTACCCTTAAGTGTCAATTCGAAAAAAAAAGAAAAACAGTATAACCTAAGAATGAGCAATTTTTAGACATAGTAATTAATTTTTAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCAAAGAAAGATGATAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>TGTTGAAGAAATCCGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>TGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTGATGATTAGGAAAAGATGATATTTTGACCATTTATCGTAAAACCTTTGCACAGTCAAGTTTGAGCTAAACTATCTCGGCTCCCACGAGAGATATCAAAAATCTGTCAACTGATAAAAAGTGTTTCTAATATTATGATAAACAATTTATAAGTTGATCACTTTTTGATATCTCTTACAGGGAGCCAGATAAATTGGTTTCATGTAAAAAACAAGAAAGCCCTTCTATTACAGGTTTTACGTATTTTTTTTCGGATTTCTTCAACA</canonical_amplicon>
		<polymorphic_amplicon>TGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTGATGATTAGGAAAAGATGATATTTTGACCRTTTATCGTAAAACCTTTGCACAGTCAAGTTTGAGCTAAACTATCTCGGCTCCCACGAGAGATATCAAAAATCTGTCAACTGATAAAAAGTGTTTCTAATATTATGATAAACAATTTATAAGTTGATCACTTTTTGATATCTCTTACAGGGAGCCAGATAAATTGGTTTCATGTAAAAAACAAGAAAGCCCTTCTATTACAGGTTTTACGTATTTTTTTTCGGATTTCTTCAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32048</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>99226</contig_pos>
        <strand></strand>
        <context>gttttacgTA[T/A]TTTTTTTCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTGGTTTCATGTAAAAAACAAGAAAGCCCTTCTATTACAGGTTTTACGTA</left_flank>
        <right_flank>TTTTTTTCGGATTTCTTCAACAAGAAAAAACAAATTTAAAAGTTTAAAAA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGACCTGTAGCTCGCTCAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGTAATTGAGTGAACATCAGTTTTTTAATCCCTTGTTTTCTCACATGCTGTACATGTGAAGAGACGATTTATTATCTTCTCAATATTTTTATTTTTTCTATATTTTTTGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTGATGATTAGGAAAAGATGATATTTTGACCATTTATCGTAAAACCTTTGCACAGTCAAGTTTGAGCTAAACTATCTCGGCTCCCACGAGAGATATCAAAAATCTGTCAACTGATAAAAAGTGTTTCTAATATTATGATAAACAATTTATAAGTTGATCACTTTTTGATATCTCTTACAGGGAGCCAGATAAATTGGTTTCATGTAAAAAACAAGAAAGCCCTTCTATTACAGGTTTTACGTATTTTTTTTCGGATTTCTTCAACAAGAAAAAACAAATTTAAAAGTTTAAAAAACCATTTATCCAGTATTATCAATCATCGGCAATAGTCGAAATAAGGCAATTCAAAGTACCAAAAAGTAAGAAACAAGTTTTTAAAAAATTAGCAAAAAAATTGAAAAGATCCAGTTTCATTCTTGGAATTCAGGTCCACGAGAAAAAAAAGTACCCTTAAGTGTCAATTCGAAAAAAAAAGAAAAACAGTATAACCTAAGAATGAGCAATTTTTAGACATAGTAATTAATTTTTAAATTTTTTGGTCACGGCAAATTTTCATGATTTGGTTTGGAAAGGGGGGCAAGACCCGTTTTGGCAATTTAGATAATTAATTGGGGAGAGATAATTATGAAAGAAATTAGTTCCTAGAATTGTCGTTTTCCCGGCTCGTATTCAAGTCCGGGATCGAATTGTTCGAGTACGTAGACCTGAAAATTGAAATATAAAGAACATTGGTAGCATTTTTTT</canonical>
            <polymorphic>AAAAGACCTGTAGCTCGCTCAGTTTTCATCCAATTTTCAAAAATTGATATTTGCAGAACTAGCCTTTTCAGACGGTTTGAATTAATCTAAATTTGAAATCTTCTTAAAACGTTGTAATTGAGTGAACATCAGTTTTTTAATCCCTTGTTTTCTCACATGCTGTACATGTGAAGAGACGATTTATTATCTTCTCAATATTTTTATTTTTTCTATATTTTTTGCAAAGAAAGATGATAAAAATCTGTCTAGTTAAAAATTGATGATTAGGAAAAGATGATATTTTGACCATTTATCGTAAAACCTTTGCACAGTCAAGTTTGAGCTAAACTATCTCGGCTCCCACGAGAGATATCAAAAATCTGTCAACTGATAAAAAGTGTTTCTAATATTATGATAAACAATTTATAAGTTGATCACTTTTTGATATCTCTTACAGGGAGCCAGATAAATTGGTTTCATGTAAAAAACAAGAAAGCCCTTCTATTACAGGTTTTACGTAWTTTTTTTCGGATTTCTTCAACAAGAAAAAACAAATTTAAAAGTTTAAAAAACCATTTATCCAGTATTATCAATCATCGGCAATAGTCGAAATAAGGCAATTCAAAGTACCAAAAAGTAAGAAACAAGTTTTTAAAAAATTAGCAAAAAAATTGAAAAGATCCAGTTTCATTCTTGGAATTCAGGTCCACGAGAAAAAAAAGTACCCTTAAGTGTCAATTCGAAAAAAAAAGAAAAACAGTATAACCTAAGAATGAGCAATTTTTAGACATAGTAATTAATTTTTAAATTTTTTGGTCACGGCAAATTTTCATGATTTGGTTTGGAAAGGGGGGCAAGACCCGTTTTGGCAATTTAGATAATTAATTGGGGAGAGATAATTATGAAAGAAATTAGTTCCTAGAATTGTCGTTTTCCCGGCTCGTATTCAAGTCCGGGATCGAATTGTTCGAGTACGTAGACCTGAAAATTGAAATATAAAGAACATTGGTAGCATTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGATGATTAGGAAAAGATGA</pcr_primer_p1>
		<pcr_primer_p2>TGATAATACTGGATAAATGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>317</pcr_amplicon_size>
		<canonical_amplicon>AATTGATGATTAGGAAAAGATGATATTTTGACCATTTATCGTAAAACCTTTGCACAGTCAAGTTTGAGCTAAACTATCTCGGCTCCCACGAGAGATATCAAAAATCTGTCAACTGATAAAAAGTGTTTCTAATATTATGATAAACAATTTATAAGTTGATCACTTTTTGATATCTCTTACAGGGAGCCAGATAAATTGGTTTCATGTAAAAAACAAGAAAGCCCTTCTATTACAGGTTTTACGTATTTTTTTTCGGATTTCTTCAACAAGAAAAAACAAATTTAAAAGTTTAAAAAACCATTTATCCAGTATTATCA</canonical_amplicon>
		<polymorphic_amplicon>AATTGATGATTAGGAAAAGATGATATTTTGACCATTTATCGTAAAACCTTTGCACAGTCAAGTTTGAGCTAAACTATCTCGGCTCCCACGAGAGATATCAAAAATCTGTCAACTGATAAAAAGTGTTTCTAATATTATGATAAACAATTTATAAGTTGATCACTTTTTGATATCTCTTACAGGGAGCCAGATAAATTGGTTTCATGTAAAAAACAAGAAAGCCCTTCTATTACAGGTTTTACGTAWTTTTTTTCGGATTTCTTCAACAAGAAAAAACAAATTTAAAAGTTTAAAAAACCATTTATCCAGTATTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32049</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>110770</contig_pos>
        <strand>+</strand>
        <context>TTATGTCTTT[A/T]AAAATKTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCATCAGACGTAGTGCACGAAGGAAACGGAATCCTGGAATTATGTCTTT</left_flank>
        <right_flank>AAAATTTTTGTCAAAATAGAAGAAAAACCACACATTTTGAGCCTAAAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTCTGTTTTTCAGATTCTGTTTAATGAAAAAATTGCAGTATCATCTGAATTAATGAAAGTTAAAGAAGTATGAAGTTGGCAATAATTTTCTGGACCTCAAACTTTTTTGGGGTATTTTAAACTTGAACAGAGCTGAAATTTTCATCTCAAAAAACTCACCAGGCCGAAAAGAATGAAGAAAATCATAAACAATCGTCCACACAACGTCGTACAATAAATATCACCATATCCTACTGTAGACATTGTGACCAGCACGAAATACACCGAATCCGCATAAGTGATTCTGTGTGGATTGATGAATCCTTTGAAAAAGTCTCCAGAATTTTCCAGAAGATGTACTAGACCAGCACCCGTTAGACAGACGGCGACGAAAATGGTGACTAGTTGGGTTAGACGGATGGAGGACGACGTCTTTAAGATGTTCAAGTATTGAAGAATGTCTGGTACGGTCATCAGACGTAGTGCACGAAGGAAACGGAATCCTGGAATTATGTCTTTTAAAATTTTTGTCAAAATAGAAGAAAAACCACACATTTTGAGCCTAAAATCAAGAAATTCGGGCAACTGTGAAGGATGTTATGACATTTTGAAAACTTTGGAACTCAAAATTTTTGATTCCAAAAATTTCAAATAGCCATAACTTTTTTCAAGGTAGATCAATTTTGATTAAAGTTGTCCTAAAAGATGCCTAATACTTCATTTTCAGAAATTGACAGCTTCCAAGAAAAATAGAACGTTTAGAAATTTTGGAATCAAAACGTTTGGGTTCCAAACTTTTCAAATGACCATAACTTTCTTCAAAATGGACCAATTTTAATAAAATCTGTCTCCAAATGCGTCTCTTTAAAATCTTTTTTTTTTAATTTTGAGCTCTCAATTTTCAAAACTTTTTCAAAAAAGTTCAAAAACTTACCCAACCAATTCCTCTGCAAATAAATGGCCACAAAACTCGGAGGAATCGTAAAAAAATCGATCCAACTGTACATTTCCAATAAAAAC</canonical>
            <polymorphic>GCTCTGTTTTTCAGATTCTGTTTAATGAAAAAATTGCAGTATCATCTGAATTAATGAAAGTTAAAGAAGTATGAAGTTGGCAATAATTTTCTGGACCTCAAACTTTTTTGGGGTATTTTAAACTTGAACAGAGCTGAAATTTTCATCTCAAAAAACTCACCAGGCCGAAAAGAATGAAGAAAATCATAAACAATCGTCCACACAACGTCGTACAATAAATATCACCATATCCTACTGTAGACATTGTGACCAGCACGAAATACACCGAATCCGCATAAGTGATTCTGTGTGGATTGATGAATCCTTTGAAAAAGTCTCCAGAATTTTCCAGAAGATGTACTAGACCAGCACCCGTTAGACAGACGGCGACGAAAATGGTGACTAGTTGGGTTAGACGGATGGAGGACGACGTCTTTAAGATGTTCAAGTATTGAAGAATGTCTGGTACGGTCATCAGACGTAGTGCACGAAGGAAACGGAATCCTGGAATTATGTCTTTWAAAATTTTTGTCAAAATAGAAGAAAAACCACACATTTTGAGCCTAAAATCAAGAAATTCGGGCAACTGTGAAGGATGTTATGACATTTTGAAAACTTTGGAACTCAAAATTTTTGATTCCAAAAATTTCAAATAGCCATAACTTTTTTCAAGGTAGATCAATTTTGATTAAAGTTGTCCTAAAAGATGCCTAATACTTCATTTTCAGAAATTGACAGCTTCCAAGAAAAATAGAACGTTTAGAAATTTTGGAATCAAAACGTTTGGGTTCCAAACTTTTCAAATGACCATAACTTTCTTCAAAATGGACCAATTTTAATAAAATCTGTCTCCAAATGCGTCTCTTTAAAATCTTTTTTTTTTAATTTTGAGCTCTCAATTTTCAAAACTTTTTCAAAAAAGTTCAAAAACTTACCCAACCAATTCCTCTGCAAATAAATGGCCACAAAACTCGGAGGAATCGTAAAAAAATCGATCCAACTGTACATTTCCAATAAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>381 346 154 119</canonical_bands>
                <polymorphic_bands>727 154 119</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>297 169 147 139 84 57 30 29 22 16 10</canonical_bands>
                <polymorphic_bands>297 253 147 139 57 30 29 22 16 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAGTATTGAAGAATGTCTGGT</pcr_primer_p1>
		<pcr_primer_p2>CAAAATTGATCTACCTTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TCAAGTATTGAAGAATGTCTGGTACGGTCATCAGACGTAGTGCACGAAGGAAACGGAATCCTGGAATTATGTCTTTTAAAATTTTTGTCAAAATAGAAGAAAAACCACACATTTTGAGCCTAAAATCAAGAAATTCGGGCAACTGTGAAGGATGTTATGACATTTTGAAAACTTTGGAACTCAAAATTTTTGATTCCAAAAATTTCAAATAGCCATAACTTTTTTCAAGGTAGATCAATTTTG</canonical_amplicon>
		<polymorphic_amplicon>TCAAGTATTGAAGAATGTCTGGTACGGTCATCAGACGTAGTGCACGAAGGAAACGGAATCCTGGAATTATGTCTTTWAAAATTTTTGTCAAAATAGAAGAAAAACCACACATTTTGAGCCTAAAATCAAGAAATTCGGGCAACTGTGAAGGATGTTATGACATTTTGAAAACTTTGGAACTCAAAATTTTTGATTCCAAAAATTTCAAATAGCCATAACTTTTTTCAAGGTAGATCAATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32050</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>110776</contig_pos>
        <strand>+</strand>
        <context>CTTTWAAAAT[G/T]TTTGTCAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGACGTAGTGCACGAAGGAAACGGAATCCTGGAATTATGTCTTTTAAAAT</left_flank>
        <right_flank>TTTGTCAAAATAGAAGAAAAACCACACATTTTGAGCCTAAAATCAAGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTCAGATTCTGTTTAATGAAAAAATTGCAGTATCATCTGAATTAATGAAAGTTAAAGAAGTATGAAGTTGGCAATAATTTTCTGGACCTCAAACTTTTTTGGGGTATTTTAAACTTGAACAGAGCTGAAATTTTCATCTCAAAAAACTCACCAGGCCGAAAAGAATGAAGAAAATCATAAACAATCGTCCACACAACGTCGTACAATAAATATCACCATATCCTACTGTAGACATTGTGACCAGCACGAAATACACCGAATCCGCATAAGTGATTCTGTGTGGATTGATGAATCCTTTGAAAAAGTCTCCAGAATTTTCCAGAAGATGTACTAGACCAGCACCCGTTAGACAGACGGCGACGAAAATGGTGACTAGTTGGGTTAGACGGATGGAGGACGACGTCTTTAAGATGTTCAAGTATTGAAGAATGTCTGGTACGGTCATCAGACGTAGTGCACGAAGGAAACGGAATCCTGGAATTATGTCTTTTAAAATTTTTGTCAAAATAGAAGAAAAACCACACATTTTGAGCCTAAAATCAAGAAATTCGGGCAACTGTGAAGGATGTTATGACATTTTGAAAACTTTGGAACTCAAAATTTTTGATTCCAAAAATTTCAAATAGCCATAACTTTTTTCAAGGTAGATCAATTTTGATTAAAGTTGTCCTAAAAGATGCCTAATACTTCATTTTCAGAAATTGACAGCTTCCAAGAAAAATAGAACGTTTAGAAATTTTGGAATCAAAACGTTTGGGTTCCAAACTTTTCAAATGACCATAACTTTCTTCAAAATGGACCAATTTTAATAAAATCTGTCTCCAAATGCGTCTCTTTAAAATCTTTTTTTTTTAATTTTGAGCTCTCAATTTTCAAAACTTTTTCAAAAAAGTTCAAAAACTTACCCAACCAATTCCTCTGCAAATAAATGGCCACAAAACTCGGAGGAATCGTAAAAAAATCGATCCAACTGTACATTTCCAATAAAAACCAAACT</canonical>
            <polymorphic>TTTTTCAGATTCTGTTTAATGAAAAAATTGCAGTATCATCTGAATTAATGAAAGTTAAAGAAGTATGAAGTTGGCAATAATTTTCTGGACCTCAAACTTTTTTGGGGTATTTTAAACTTGAACAGAGCTGAAATTTTCATCTCAAAAAACTCACCAGGCCGAAAAGAATGAAGAAAATCATAAACAATCGTCCACACAACGTCGTACAATAAATATCACCATATCCTACTGTAGACATTGTGACCAGCACGAAATACACCGAATCCGCATAAGTGATTCTGTGTGGATTGATGAATCCTTTGAAAAAGTCTCCAGAATTTTCCAGAAGATGTACTAGACCAGCACCCGTTAGACAGACGGCGACGAAAATGGTGACTAGTTGGGTTAGACGGATGGAGGACGACGTCTTTAAGATGTTCAAGTATTGAAGAATGTCTGGTACGGTCATCAGACGTAGTGCACGAAGGAAACGGAATCCTGGAATTATGTCTTTTAAAATKTTTGTCAAAATAGAAGAAAAACCACACATTTTGAGCCTAAAATCAAGAAATTCGGGCAACTGTGAAGGATGTTATGACATTTTGAAAACTTTGGAACTCAAAATTTTTGATTCCAAAAATTTCAAATAGCCATAACTTTTTTCAAGGTAGATCAATTTTGATTAAAGTTGTCCTAAAAGATGCCTAATACTTCATTTTCAGAAATTGACAGCTTCCAAGAAAAATAGAACGTTTAGAAATTTTGGAATCAAAACGTTTGGGTTCCAAACTTTTCAAATGACCATAACTTTCTTCAAAATGGACCAATTTTAATAAAATCTGTCTCCAAATGCGTCTCTTTAAAATCTTTTTTTTTTAATTTTGAGCTCTCAATTTTCAAAACTTTTTCAAAAAAGTTCAAAAACTTACCCAACCAATTCCTCTGCAAATAAATGGCCACAAAACTCGGAGGAATCGTAAAAAAATCGATCCAACTGTACATTTCCAATAAAAACCAAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>263 184 181 131 120 53 52 16</canonical_bands>
                <polymorphic_bands>263 233 184 131 120 53 16</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>184 166 86 67 53 53 52 52 49 44 36 36 35 25 17 16 15 14</canonical_bands>
                <polymorphic_bands>184 166 86 67 67 53 53 52 49 44 36 36 35 25 17 16 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAGTATTGAAGAATGTCTGGT</pcr_primer_p1>
		<pcr_primer_p2>CAAAATTGATCTACCTTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TCAAGTATTGAAGAATGTCTGGTACGGTCATCAGACGTAGTGCACGAAGGAAACGGAATCCTGGAATTATGTCTTTTAAAATTTTTGTCAAAATAGAAGAAAAACCACACATTTTGAGCCTAAAATCAAGAAATTCGGGCAACTGTGAAGGATGTTATGACATTTTGAAAACTTTGGAACTCAAAATTTTTGATTCCAAAAATTTCAAATAGCCATAACTTTTTTCAAGGTAGATCAATTTTG</canonical_amplicon>
		<polymorphic_amplicon>TCAAGTATTGAAGAATGTCTGGTACGGTCATCAGACGTAGTGCACGAAGGAAACGGAATCCTGGAATTATGTCTTTTAAAATKTTTGTCAAAATAGAAGAAAAACCACACATTTTGAGCCTAAAATCAAGAAATTCGGGCAACTGTGAAGGATGTTATGACATTTTGAAAACTTTGGAACTCAAAATTTTTGATTCCAAAAATTTCAAATAGCCATAACTTTTTTCAAGGTAGATCAATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32051</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>114206</contig_pos>
        <strand></strand>
        <context>AAAAAATGAA[C/T]GTTTTTGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATTTAGACAATTTCAGACATTTTAAGCCAAAGACCACAAAAAATGAA</left_flank>
        <right_flank>GTTTTTGAAAAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAAAAAATTATTTTTTTAATATCCCCAAATTCAAAATCTTACCTCTGTCATCCATCCCAAATGTTTTTCCTCTTGTTGCTGTTTTAAAAATGGGTCGGCCTCTCCGCCGATATGCTTCGAACCATTCATATTGATTGCGACCACTTCTGGCGGAGGTACGGGCTCTGGGAATTCTCGCTCCCTCCGTTGACAGCATAAATGTGTTACGACGCGCCAGATGACGACAAGGATCATGGAGGCGCAGAATGTGGTTATACTGAAATTATTATCTAAACATTTTCGAACATTCCAGGAGCATTTTAAGCTGAAGATCCCAAAAGTTGAACTATTTTGAAGAAAGTTATGGTCAATTGAAATTTTTGGAATCAAAGTTTTATGATTCCGAAATTTTCAAAATGTCATAACTTTTTTGGATATAGTCCATTTTGTTTGAAATGTTTATAAATTAAAATTTAGACAATTTCAGACATTTTAAGCCAAAGACCACAAAAAATGAACGTTTTTGAAAAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGTTCCTCGAGACATTTCCGGTCCTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATCGGAAATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGT</canonical>
            <polymorphic>TTTAAAAAATTATTTTTTTAATATCCCCAAATTCAAAATCTTACCTCTGTCATCCATCCCAAATGTTTTTCCTCTTGTTGCTGTTTTAAAAATGGGTCGGCCTCTCCGCCGATATGCTTCGAACCATTCATATTGATTGCGACCACTTCTGGCGGAGGTACGGGCTCTGGGAATTCTCGCTCCCTCCGTTGACAGCATAAATGTGTTACGACGCGCCAGATGACGACAAGGATCATGGAGGCGCAGAATGTGGTTATACTGAAATTATTATCTAAACATTTTCGAACATTCCAGGAGCATTTTAAGCTGAAGATCCCAAAAGTTGAACTATTTTGAAGAAAGTTATGGTCAATTGAAATTTTTGGAATCAAAGTTTTATGATTCCGAAATTTTCAAAATGTCATAACTTTTTTGGATATAGTCCATTTTGTTTGAAATGTTTATAAATTAAAATTTAGACAATTTCAGACATTTTAAGCCAAAGACCACAAAAAATGAAYGTTTTTGAAAAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGTTCCTCGAGACATTTCCGGTCCTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATCGGAAATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>499 498 3</canonical_bands>
                <polymorphic_bands>997 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTATGGTCAATTGAAATTTTTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAAGGAAGTTATGACATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTATGGTCAATTGAAATTTTTGGAATCAAAGTTTTATGATTCCGAAATTTTCAAAATGTCATAACTTTTTTGGATATAGTCCATTTTGTTTGAAATGTTTATAAATTAAAATTTAGACAATTTCAGACATTTTAAGCCAAAGACCACAAAAAATGAACGTTTTTGAAAAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTTATGGTCAATTGAAATTTTTGGAATCAAAGTTTTATGATTCCGAAATTTTCAAAATGTCATAACTTTTTTGGATATAGTCCATTTTGTTTGAAATGTTTATAAATTAAAATTTAGACAATTTCAGACATTTTAAGCCAAAGACCACAAAAAATGAAYGTTTTTGAAAAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32052</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>114398</contig_pos>
        <strand>+</strand>
        <context>CAAAGTTATG[A/G]Aaattttgaa</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATG</left_flank>
        <right_flank>AAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCATAAATGTGTTACGACGCGCCAGATGACGACAAGGATCATGGAGGCGCAGAATGTGGTTATACTGAAATTATTATCTAAACATTTTCGAACATTCCAGGAGCATTTTAAGCTGAAGATCCCAAAAGTTGAACTATTTTGAAGAAAGTTATGGTCAATTGAAATTTTTGGAATCAAAGTTTTATGATTCCGAAATTTTCAAAATGTCATAACTTTTTTGGATATAGTCCATTTTGTTTGAAATGTTTATAAATTAAAATTTAGACAATTTCAGACATTTTAAGCCAAAGACCACAAAAAATGAACGTTTTTGAAAAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGTTCCTCGAGACATTTCCGGTCCTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATCGGAAATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGTTATCTTTTTGTATCCCTCTCCGCCTAGACGGCCTGAAAAGTTGAAAAAAATTGATTTCAGAAAAAGTTCAAAAATTAAGAAAATGGGAAAGGTTATTTTTCAAATGGAAAGGGTCTGAGAATAGAATGGAAACGCAGGAAAAAAAACTTGTAAAAGTACAGTTAAATTGTGATAATATGGGAAGTGAGTATA</canonical>
            <polymorphic>CAGCATAAATGTGTTACGACGCGCCAGATGACGACAAGGATCATGGAGGCGCAGAATGTGGTTATACTGAAATTATTATCTAAACATTTTCGAACATTCCAGGAGCATTTTAAGCTGAAGATCCCAAAAGTTGAACTATTTTGAAGAAAGTTATGGTCAATTGAAATTTTTGGAATCAAAGTTTTATGATTCCGAAATTTTCAAAATGTCATAACTTTTTTGGATATAGTCCATTTTGTTTGAAATGTTTATAAATTAAAATTTAGACAATTTCAGACATTTTAAGCCAAAGACCACAAAAAATGAACGTTTTTGAAAAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGRAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGTTCCTCGAGACATTTCCGGTCCTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATCGGAAATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGTTATCTTTTTGTATCCCTCTCCGCCTAGACGGCCTGAAAAGTTGAAAAAAATTGATTTCAGAAAAAGTTCAAAAATTAAGAAAATGGGAAAGGTTATTTTTCAAATGGAAAGGGTCTGAGAATAGAATGGAAACGCAGGAAAAAAAACTTGTAAAAGTACAGTTAAATTGTGATAATATGGGAAGTGAGTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTCTAGCTCAAAATGTGTGAT</pcr_primer_p1>
		<pcr_primer_p2>ACGCAAATATTGGTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGT</canonical_amplicon>
		<polymorphic_amplicon>GTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGRAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32053</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>114413</contig_pos>
        <strand></strand>
        <context>tttgaatttt[T/C]ggaatcaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTT</left_flank>
        <right_flank>GGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGACGCGCCAGATGACGACAAGGATCATGGAGGCGCAGAATGTGGTTATACTGAAATTATTATCTAAACATTTTCGAACATTCCAGGAGCATTTTAAGCTGAAGATCCCAAAAGTTGAACTATTTTGAAGAAAGTTATGGTCAATTGAAATTTTTGGAATCAAAGTTTTATGATTCCGAAATTTTCAAAATGTCATAACTTTTTTGGATATAGTCCATTTTGTTTGAAATGTTTATAAATTAAAATTTAGACAATTTCAGACATTTTAAGCCAAAGACCACAAAAAATGAACGTTTTTGAAAAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGTTCCTCGAGACATTTCCGGTCCTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATCGGAAATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGTTATCTTTTTGTATCCCTCTCCGCCTAGACGGCCTGAAAAGTTGAAAAAAATTGATTTCAGAAAAAGTTCAAAAATTAAGAAAATGGGAAAGGTTATTTTTCAAATGGAAAGGGTCTGAGAATAGAATGGAAACGCAGGAAAAAAAACTTGTAAAAGTACAGTTAAATTGTGATAATATGGGAAGTGAGTATATTCAAAAATTGAGAA</canonical>
            <polymorphic>ACGACGCGCCAGATGACGACAAGGATCATGGAGGCGCAGAATGTGGTTATACTGAAATTATTATCTAAACATTTTCGAACATTCCAGGAGCATTTTAAGCTGAAGATCCCAAAAGTTGAACTATTTTGAAGAAAGTTATGGTCAATTGAAATTTTTGGAATCAAAGTTTTATGATTCCGAAATTTTCAAAATGTCATAACTTTTTTGGATATAGTCCATTTTGTTTGAAATGTTTATAAATTAAAATTTAGACAATTTCAGACATTTTAAGCCAAAGACCACAAAAAATGAACGTTTTTGAAAAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTYGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGTTCCTCGAGACATTTCCGGTCCTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATCGGAAATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGTTATCTTTTTGTATCCCTCTCCGCCTAGACGGCCTGAAAAGTTGAAAAAAATTGATTTCAGAAAAAGTTCAAAAATTAAGAAAATGGGAAAGGTTATTTTTCAAATGGAAAGGGTCTGAGAATAGAATGGAAACGCAGGAAAAAAAACTTGTAAAAGTACAGTTAAATTGTGATAATATGGGAAGTGAGTATATTCAAAAATTGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTCTAGCTCAAAATGTGTGAT</pcr_primer_p1>
		<pcr_primer_p2>ACGCAAATATTGGTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGT</canonical_amplicon>
		<polymorphic_amplicon>GTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTYGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32054</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>114428</contig_pos>
        <strand></strand>
        <context>tcaaaatttt[T/A]tgattccgaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTT</left_flank>
        <right_flank>TGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGACAAGGATCATGGAGGCGCAGAATGTGGTTATACTGAAATTATTATCTAAACATTTTCGAACATTCCAGGAGCATTTTAAGCTGAAGATCCCAAAAGTTGAACTATTTTGAAGAAAGTTATGGTCAATTGAAATTTTTGGAATCAAAGTTTTATGATTCCGAAATTTTCAAAATGTCATAACTTTTTTGGATATAGTCCATTTTGTTTGAAATGTTTATAAATTAAAATTTAGACAATTTCAGACATTTTAAGCCAAAGACCACAAAAAATGAACGTTTTTGAAAAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGTTCCTCGAGACATTTCCGGTCCTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATCGGAAATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGTTATCTTTTTGTATCCCTCTCCGCCTAGACGGCCTGAAAAGTTGAAAAAAATTGATTTCAGAAAAAGTTCAAAAATTAAGAAAATGGGAAAGGTTATTTTTCAAATGGAAAGGGTCTGAGAATAGAATGGAAACGCAGGAAAAAAAACTTGTAAAAGTACAGTTAAATTGTGATAATATGGGAAGTGAGTATATTCAAAAATTGAGAAAAGGACGATGTTCAA</canonical>
            <polymorphic>ACGACAAGGATCATGGAGGCGCAGAATGTGGTTATACTGAAATTATTATCTAAACATTTTCGAACATTCCAGGAGCATTTTAAGCTGAAGATCCCAAAAGTTGAACTATTTTGAAGAAAGTTATGGTCAATTGAAATTTTTGGAATCAAAGTTTTATGATTCCGAAATTTTCAAAATGTCATAACTTTTTTGGATATAGTCCATTTTGTTTGAAATGTTTATAAATTAAAATTTAGACAATTTCAGACATTTTAAGCCAAAGACCACAAAAAATGAACGTTTTTGAAAAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTWTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGTTCCTCGAGACATTTCCGGTCCTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATCGGAAATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGTTATCTTTTTGTATCCCTCTCCGCCTAGACGGCCTGAAAAGTTGAAAAAAATTGATTTCAGAAAAAGTTCAAAAATTAAGAAAATGGGAAAGGTTATTTTTCAAATGGAAAGGGTCTGAGAATAGAATGGAAACGCAGGAAAAAAAACTTGTAAAAGTACAGTTAAATTGTGATAATATGGGAAGTGAGTATATTCAAAAATTGAGAAAAGGACGATGTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTCTAGCTCAAAATGTGTGAT</pcr_primer_p1>
		<pcr_primer_p2>ACGCAAATATTGGTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGT</canonical_amplicon>
		<polymorphic_amplicon>GTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTWTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32055</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>114500</contig_pos>
        <strand></strand>
        <context>agctcaaaat[G/C]tgtAGTTTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAAT</left_flank>
        <right_flank>TGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACAC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGCATTTTAAGCTGAAGATCCCAAAAGTTGAACTATTTTGAAGAAAGTTATGGTCAATTGAAATTTTTGGAATCAAAGTTTTATGATTCCGAAATTTTCAAAATGTCATAACTTTTTTGGATATAGTCCATTTTGTTTGAAATGTTTATAAATTAAAATTTAGACAATTTCAGACATTTTAAGCCAAAGACCACAAAAAATGAACGTTTTTGAAAAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGTTCCTCGAGACATTTCCGGTCCTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATCGGAAATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGTTATCTTTTTGTATCCCTCTCCGCCTAGACGGCCTGAAAAGTTGAAAAAAATTGATTTCAGAAAAAGTTCAAAAATTAAGAAAATGGGAAAGGTTATTTTTCAAATGGAAAGGGTCTGAGAATAGAATGGAAACGCAGGAAAAAAAACTTGTAAAAGTACAGTTAAATTGTGATAATATGGGAAGTGAGTATATTCAAAAATTGAGAAAAGGACGATGTTCAAAATAACGGTTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACC</canonical>
            <polymorphic>GAGCATTTTAAGCTGAAGATCCCAAAAGTTGAACTATTTTGAAGAAAGTTATGGTCAATTGAAATTTTTGGAATCAAAGTTTTATGATTCCGAAATTTTCAAAATGTCATAACTTTTTTGGATATAGTCCATTTTGTTTGAAATGTTTATAAATTAAAATTTAGACAATTTCAGACATTTTAAGCCAAAGACCACAAAAAATGAACGTTTTTGAAAAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATSTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGTTCCTCGAGACATTTCCGGTCCTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATCGGAAATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGTTATCTTTTTGTATCCCTCTCCGCCTAGACGGCCTGAAAAGTTGAAAAAAATTGATTTCAGAAAAAGTTCAAAAATTAAGAAAATGGGAAAGGTTATTTTTCAAATGGAAAGGGTCTGAGAATAGAATGGAAACGCAGGAAAAAAAACTTGTAAAAGTACAGTTAAATTGTGATAATATGGGAAGTGAGTATATTCAAAAATTGAGAAAAGGACGATGTTCAAAATAACGGTTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>194 186 168 142 138 55 53 47 15 2</canonical_bands>
                <polymorphic_bands>215 194 186 142 138 55 53 15 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTCTAGCTCAAAATGTGTGAT</pcr_primer_p1>
		<pcr_primer_p2>ACGCAAATATTGGTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGT</canonical_amplicon>
		<polymorphic_amplicon>GTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATSTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32056</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>114715</contig_pos>
        <strand>+</strand>
        <context>GTTATCTTTT[A/G]GTATCCCTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGTTATCTTTT</left_flank>
        <right_flank>GTATCCCTCTCCGCCTAGACGGCCTGAAAAGTTGAAAAAAATTGATTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGTTCCTCGAGACATTTCCGGTCCTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATCGGAAATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGTTATCTTTTTGTATCCCTCTCCGCCTAGACGGCCTGAAAAGTTGAAAAAAATTGATTTCAGAAAAAGTTCAAAAATTAAGAAAATGGGAAAGGTTATTTTTCAAATGGAAAGGGTCTGAGAATAGAATGGAAACGCAGGAAAAAAAACTTGTAAAAGTACAGTTAAATTGTGATAATATGGGAAGTGAGTATATTCAAAAATTGAGAAAAGGACGATGTTCAAAATAACGGTTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGACGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCGTCGCCTTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCCACCTTTAAGACTAT</canonical>
            <polymorphic>AAAAGTTGTTGATGATTTGAAATTTTTGGAATCAAAATTTTTTGATTTCGAAATTTTAAAAATGTCATAACTTCCTTCAAAATAGCCTCAAATTCTTGGTTTCTAGCTCAAAATGTGTGATTTTTTTCTATTTTCGAAGAATAACTATTCCAATCAAAAAGAATGAATTTTTCAAAGTTATGGAAATTTTGAATTTTTGGAATCAAAATTTTTTGATTCCGAATTTTCAAAATGTCATAACTTCCTTCAAAACAGCTCAAAATTCTTGGTTTCTAGCTCAAAATGTGTAGTTTGTATTCTATTTTCAGAAAAATTACCTGCTCAACAAAAAACACCAATATTTGCGTTCCTCGAGACATTTCCGGTCCTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATCGGAAATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGTTATCTTTTRGTATCCCTCTCCGCCTAGACGGCCTGAAAAGTTGAAAAAAATTGATTTCAGAAAAAGTTCAAAAATTAAGAAAATGGGAAAGGTTATTTTTCAAATGGAAAGGGTCTGAGAATAGAATGGAAACGCAGGAAAAAAAACTTGTAAAAGTACAGTTAAATTGTGATAATATGGGAAGTGAGTATATTCAAAAATTGAGAAAAGGACGATGTTCAAAATAACGGTTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGACGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCGTCGCCTTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCCACCTTTAAGACTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCTCTGTCATTTCCATAAAC</pcr_primer_p1>
		<pcr_primer_p2>CATTCTATTCTCAGACCCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATCGGAAATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGTTATCTTTTTGTATCCCTCTCCGCCTAGACGGCCTGAAAAGTTGAAAAAAATTGATTTCAGAAAAAGTTCAAAAATTAAGAAAATGGGAAAGGTTATTTTTCAAATGGAAAGGGTCTGAGAATAGAATG</canonical_amplicon>
		<polymorphic_amplicon>CTCCTCTGTCATTTCCATAAACGCCCGGCTAAGATTACAATTCATCGGAAATCCATATGGTTGATTGAATCCCTTCGACTGCGACGGCGAGTAAATCTCGCTCATCGTGAAGAAGAAGGGACGTTATCTTTTRGTATCCCTCTCCGCCTAGACGGCCTGAAAAGTTGAAAAAAATTGATTTCAGAAAAAGTTCAAAAATTAAGAAAATGGGAAAGGTTATTTTTCAAATGGAAAGGGTCTGAGAATAGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32057</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>156888</contig_pos>
        <strand></strand>
        <context>gtttatcata[T/A]tatcaccaac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATA</left_flank>
        <right_flank>TATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCACTCATTCCATTCCATTTCACCTCCTAAATTGACGGGAAAAATTTTGGAAAAAAAAACGGAAAAAGAAGAGGAAGAAGAAATTGAAGTGGTGGAAGAAGAAGACGTTAACATCTTCTAGAAGAATGCGTAAAACGGAAAAAAGAAGAGGAAGATGTGTTTCTCGGTTTTGTTGGTCTATGTTAGTGTGTATTAGTAAAAAAGGAAGAAGGGACACACAAAAATACACACACACCCAAAAAAAAATAATTGAAGAGAAATTTGAAGAGATAGAGAGAATTAGAGAAAAAATGAGATAATTAGTGAGGTTGTCGAAAAAAAAGGGAGTAGGATGAAGACTACTGATGAGGAATTAGGATGAATGGAAATTTGAGAATCTAAAATTCTTTTTGAAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGGAAAGTGGAGGGTCAAATCAGTTCTCGCTTTCTCTGGGCTCCAGAGAAGGTGACCCGGGGATCTTGGGTCCTAGGTCCT</canonical>
            <polymorphic>TTTTTCACTCATTCCATTCCATTTCACCTCCTAAATTGACGGGAAAAATTTTGGAAAAAAAAACGGAAAAAGAAGAGGAAGAAGAAATTGAAGTGGTGGAAGAAGAAGACGTTAACATCTTCTAGAAGAATGCGTAAAACGGAAAAAAGAAGAGGAAGATGTGTTTCTCGGTTTTGTTGGTCTATGTTAGTGTGTATTAGTAAAAAAGGAAGAAGGGACACACAAAAATACACACACACCCAAAAAAAAATAATTGAAGAGAAATTTGAAGAGATAGAGAGAATTAGAGAAAAAATGAGATAATTAGTGAGGTTGTCGAAAAAAAAGGGAGTAGGATGAAGACTACTGATGAGGAATTAGGATGAATGGAAATTTGAGAATCTAAAATTCTTTTTGAAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATAWTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGGAAAGTGGAGGGTCAAATCAGTTCTCGCTTTCTCTGGGCTCCAGAGAAGGTGACCCGGGGATCTTGGGTCCTAGGTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTTCGAGAAAATGAGATT</pcr_primer_p1>
		<pcr_primer_p2>CCTCTTCCTTTATAGTATTTCTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>526</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATAWTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32058</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>156960</contig_pos>
        <strand></strand>
        <context>tggctcaaat[T/C]caaacgtttg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAAT</left_flank>
        <right_flank>CAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAGGAAGAAGAAATTGAAGTGGTGGAAGAAGAAGACGTTAACATCTTCTAGAAGAATGCGTAAAACGGAAAAAAGAAGAGGAAGATGTGTTTCTCGGTTTTGTTGGTCTATGTTAGTGTGTATTAGTAAAAAAGGAAGAAGGGACACACAAAAATACACACACACCCAAAAAAAAATAATTGAAGAGAAATTTGAAGAGATAGAGAGAATTAGAGAAAAAATGAGATAATTAGTGAGGTTGTCGAAAAAAAAGGGAGTAGGATGAAGACTACTGATGAGGAATTAGGATGAATGGAAATTTGAGAATCTAAAATTCTTTTTGAAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGGAAAGTGGAGGGTCAAATCAGTTCTCGCTTTCTCTGGGCTCCAGAGAAGGTGACCCGGGGATCTTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCTTAGGCCCGGGTCCTGGGTCCGGGTTTGGGTGACCCTGA</canonical>
            <polymorphic>AAGAGGAAGAAGAAATTGAAGTGGTGGAAGAAGAAGACGTTAACATCTTCTAGAAGAATGCGTAAAACGGAAAAAAGAAGAGGAAGATGTGTTTCTCGGTTTTGTTGGTCTATGTTAGTGTGTATTAGTAAAAAAGGAAGAAGGGACACACAAAAATACACACACACCCAAAAAAAAATAATTGAAGAGAAATTTGAAGAGATAGAGAGAATTAGAGAAAAAATGAGATAATTAGTGAGGTTGTCGAAAAAAAAGGGAGTAGGATGAAGACTACTGATGAGGAATTAGGATGAATGGAAATTTGAGAATCTAAAATTCTTTTTGAAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATYCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGGAAAGTGGAGGGTCAAATCAGTTCTCGCTTTCTCTGGGCTCCAGAGAAGGTGACCCGGGGATCTTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCTTAGGCCCGGGTCCTGGGTCCGGGTTTGGGTGACCCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>221 190 169 169 108 73 31 15 14 10</canonical_bands>
                <polymorphic_bands>221 200 190 169 108 73 15 14 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>221 166 159 115 73 53 33 31 20 19 16 16 15 14 13 11 10 10 5</canonical_bands>
                <polymorphic_bands>221 166 159 115 73 53 41 33 20 19 16 16 15 14 13 11 10 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTTCGAGAAAATGAGATT</pcr_primer_p1>
		<pcr_primer_p2>CCTCTTCCTTTATAGTATTTCTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>526</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATYCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32059</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>156985</contig_pos>
        <strand>+</strand>
        <context>TGGGGTCTAG[C/T]CAAATyttgr</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAG</left_flank>
        <right_flank>CAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAAGAAGAAGACGTTAACATCTTCTAGAAGAATGCGTAAAACGGAAAAAAGAAGAGGAAGATGTGTTTCTCGGTTTTGTTGGTCTATGTTAGTGTGTATTAGTAAAAAAGGAAGAAGGGACACACAAAAATACACACACACCCAAAAAAAAATAATTGAAGAGAAATTTGAAGAGATAGAGAGAATTAGAGAAAAAATGAGATAATTAGTGAGGTTGTCGAAAAAAAAGGGAGTAGGATGAAGACTACTGATGAGGAATTAGGATGAATGGAAATTTGAGAATCTAAAATTCTTTTTGAAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGGAAAGTGGAGGGTCAAATCAGTTCTCGCTTTCTCTGGGCTCCAGAGAAGGTGACCCGGGGATCTTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCTTAGGCCCGGGTCCTGGGTCCGGGTTTGGGTGACCCTGACCGGGTGACCTGGATCCGGGTGACC</canonical>
            <polymorphic>GGAAGAAGAAGACGTTAACATCTTCTAGAAGAATGCGTAAAACGGAAAAAAGAAGAGGAAGATGTGTTTCTCGGTTTTGTTGGTCTATGTTAGTGTGTATTAGTAAAAAAGGAAGAAGGGACACACAAAAATACACACACACCCAAAAAAAAATAATTGAAGAGAAATTTGAAGAGATAGAGAGAATTAGAGAAAAAATGAGATAATTAGTGAGGTTGTCGAAAAAAAAGGGAGTAGGATGAAGACTACTGATGAGGAATTAGGATGAATGGAAATTTGAGAATCTAAAATTCTTTTTGAAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGYCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGGAAAGTGGAGGGTCAAATCAGTTCTCGCTTTCTCTGGGCTCCAGAGAAGGTGACCCGGGGATCTTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCTTAGGCCCGGGTCCTGGGTCCGGGTTTGGGTGACCCTGACCGGGTGACCTGGATCCGGGTGACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>363 338 129 79 59 32</canonical_bands>
                <polymorphic_bands>395 338 129 79 59</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTTCGAGAAAATGAGATT</pcr_primer_p1>
		<pcr_primer_p2>CCTCTTCCTTTATAGTATTTCTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>526</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGYCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32060</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>156991</contig_pos>
        <strand></strand>
        <context>CTAGYCAAAT[T/C]ttgrtgaatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAAT</left_flank>
        <right_flank>TTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAGACGTTAACATCTTCTAGAAGAATGCGTAAAACGGAAAAAAGAAGAGGAAGATGTGTTTCTCGGTTTTGTTGGTCTATGTTAGTGTGTATTAGTAAAAAAGGAAGAAGGGACACACAAAAATACACACACACCCAAAAAAAAATAATTGAAGAGAAATTTGAAGAGATAGAGAGAATTAGAGAAAAAATGAGATAATTAGTGAGGTTGTCGAAAAAAAAGGGAGTAGGATGAAGACTACTGATGAGGAATTAGGATGAATGGAAATTTGAGAATCTAAAATTCTTTTTGAAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGGAAAGTGGAGGGTCAAATCAGTTCTCGCTTTCTCTGGGCTCCAGAGAAGGTGACCCGGGGATCTTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCTTAGGCCCGGGTCCTGGGTCCGGGTTTGGGTGACCCTGACCGGGTGACCTGGATCCGGGTGACCTGAATC</canonical>
            <polymorphic>AGAAGACGTTAACATCTTCTAGAAGAATGCGTAAAACGGAAAAAAGAAGAGGAAGATGTGTTTCTCGGTTTTGTTGGTCTATGTTAGTGTGTATTAGTAAAAAAGGAAGAAGGGACACACAAAAATACACACACACCCAAAAAAAAATAATTGAAGAGAAATTTGAAGAGATAGAGAGAATTAGAGAAAAAATGAGATAATTAGTGAGGTTGTCGAAAAAAAAGGGAGTAGGATGAAGACTACTGATGAGGAATTAGGATGAATGGAAATTTGAGAATCTAAAATTCTTTTTGAAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATYTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGGAAAGTGGAGGGTCAAATCAGTTCTCGCTTTCTCTGGGCTCCAGAGAAGGTGACCCGGGGATCTTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCTTAGGCCCGGGTCCTGGGTCCGGGTTTGGGTGACCCTGACCGGGTGACCTGGATCCGGGTGACCTGAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>252 169 169 159 108 73 31 15 14 10</canonical_bands>
                <polymorphic_bands>252 169 169 159 108 73 41 15 14</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>252 159 148 115 73 53 33 31 20 19 16 16 15 14 11 10 10 5</canonical_bands>
                <polymorphic_bands>252 159 148 115 73 53 41 33 20 19 16 16 15 14 11 10 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTTCGAGAAAATGAGATT</pcr_primer_p1>
		<pcr_primer_p2>CCTCTTCCTTTATAGTATTTCTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>526</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATYTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32061</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>156995</contig_pos>
        <strand></strand>
        <context>YCAAATyttg[A/G]tgaatttttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTG</left_flank>
        <right_flank>TGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGTTAACATCTTCTAGAAGAATGCGTAAAACGGAAAAAAGAAGAGGAAGATGTGTTTCTCGGTTTTGTTGGTCTATGTTAGTGTGTATTAGTAAAAAAGGAAGAAGGGACACACAAAAATACACACACACCCAAAAAAAAATAATTGAAGAGAAATTTGAAGAGATAGAGAGAATTAGAGAAAAAATGAGATAATTAGTGAGGTTGTCGAAAAAAAAGGGAGTAGGATGAAGACTACTGATGAGGAATTAGGATGAATGGAAATTTGAGAATCTAAAATTCTTTTTGAAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGGAAAGTGGAGGGTCAAATCAGTTCTCGCTTTCTCTGGGCTCCAGAGAAGGTGACCCGGGGATCTTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCTTAGGCCCGGGTCCTGGGTCCGGGTTTGGGTGACCCTGACCGGGTGACCTGGATCCGGGTGACCTGAATCCGGG</canonical>
            <polymorphic>GACGTTAACATCTTCTAGAAGAATGCGTAAAACGGAAAAAAGAAGAGGAAGATGTGTTTCTCGGTTTTGTTGGTCTATGTTAGTGTGTATTAGTAAAAAAGGAAGAAGGGACACACAAAAATACACACACACCCAAAAAAAAATAATTGAAGAGAAATTTGAAGAGATAGAGAGAATTAGAGAAAAAATGAGATAATTAGTGAGGTTGTCGAAAAAAAAGGGAGTAGGATGAAGACTACTGATGAGGAATTAGGATGAATGGAAATTTGAGAATCTAAAATTCTTTTTGAAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGRTGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGGAAAGTGGAGGGTCAAATCAGTTCTCGCTTTCTCTGGGCTCCAGAGAAGGTGACCCGGGGATCTTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCTTAGGCCCGGGTCCTGGGTCCGGGTTTGGGTGACCCTGACCGGGTGACCTGGATCCGGGTGACCTGAATCCGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTTCGAGAAAATGAGATT</pcr_primer_p1>
		<pcr_primer_p2>CCTCTTCCTTTATAGTATTTCTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>526</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGRTGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32062</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>157021</contig_pos>
        <strand></strand>
        <context>tccctgtgaa[A/T]gatatccaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAA</left_flank>
        <right_flank>GATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAAAACGGAAAAAAGAAGAGGAAGATGTGTTTCTCGGTTTTGTTGGTCTATGTTAGTGTGTATTAGTAAAAAAGGAAGAAGGGACACACAAAAATACACACACACCCAAAAAAAAATAATTGAAGAGAAATTTGAAGAGATAGAGAGAATTAGAGAAAAAATGAGATAATTAGTGAGGTTGTCGAAAAAAAAGGGAGTAGGATGAAGACTACTGATGAGGAATTAGGATGAATGGAAATTTGAGAATCTAAAATTCTTTTTGAAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGGAAAGTGGAGGGTCAAATCAGTTCTCGCTTTCTCTGGGCTCCAGAGAAGGTGACCCGGGGATCTTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCTTAGGCCCGGGTCCTGGGTCCGGGTTTGGGTGACCCTGACCGGGTGACCTGGATCCGGGTGACCTGAATCCGGGTGACCCTGACCGGGTGACCTGGATCT</canonical>
            <polymorphic>GTAAAACGGAAAAAAGAAGAGGAAGATGTGTTTCTCGGTTTTGTTGGTCTATGTTAGTGTGTATTAGTAAAAAAGGAAGAAGGGACACACAAAAATACACACACACCCAAAAAAAAATAATTGAAGAGAAATTTGAAGAGATAGAGAGAATTAGAGAAAAAATGAGATAATTAGTGAGGTTGTCGAAAAAAAAGGGAGTAGGATGAAGACTACTGATGAGGAATTAGGATGAATGGAAATTTGAGAATCTAAAATTCTTTTTGAAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAWGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGGAAAGTGGAGGGTCAAATCAGTTCTCGCTTTCTCTGGGCTCCAGAGAAGGTGACCCGGGGATCTTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCTTAGGCCCGGGTCCTGGGTCCGGGTTTGGGTGACCCTGACCGGGTGACCTGGATCCGGGTGACCTGAATCCGGGTGACCCTGACCGGGTGACCTGGATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTTCGAGAAAATGAGATT</pcr_primer_p1>
		<pcr_primer_p2>CCTCTTCCTTTATAGTATTTCTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>526</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAWGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32063</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>157043</contig_pos>
        <strand></strand>
        <context>attttaaaaa[G/A]caaaaatgtt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAA</left_flank>
        <right_flank>CAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGATGTGTTTCTCGGTTTTGTTGGTCTATGTTAGTGTGTATTAGTAAAAAAGGAAGAAGGGACACACAAAAATACACACACACCCAAAAAAAAATAATTGAAGAGAAATTTGAAGAGATAGAGAGAATTAGAGAAAAAATGAGATAATTAGTGAGGTTGTCGAAAAAAAAGGGAGTAGGATGAAGACTACTGATGAGGAATTAGGATGAATGGAAATTTGAGAATCTAAAATTCTTTTTGAAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGGAAAGTGGAGGGTCAAATCAGTTCTCGCTTTCTCTGGGCTCCAGAGAAGGTGACCCGGGGATCTTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCTTAGGCCCGGGTCCTGGGTCCGGGTTTGGGTGACCCTGACCGGGTGACCTGGATCCGGGTGACCTGAATCCGGGTGACCCTGACCGGGTGACCTGGATCTGGGTGACCTGGAGCCGGGTGAC</canonical>
            <polymorphic>AAGATGTGTTTCTCGGTTTTGTTGGTCTATGTTAGTGTGTATTAGTAAAAAAGGAAGAAGGGACACACAAAAATACACACACACCCAAAAAAAAATAATTGAAGAGAAATTTGAAGAGATAGAGAGAATTAGAGAAAAAATGAGATAATTAGTGAGGTTGTCGAAAAAAAAGGGAGTAGGATGAAGACTACTGATGAGGAATTAGGATGAATGGAAATTTGAGAATCTAAAATTCTTTTTGAAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAARCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGGAAAGTGGAGGGTCAAATCAGTTCTCGCTTTCTCTGGGCTCCAGAGAAGGTGACCCGGGGATCTTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCTTAGGCCCGGGTCCTGGGTCCGGGTTTGGGTGACCCTGACCGGGTGACCTGGATCCGGGTGACCTGAATCCGGGTGACCCTGACCGGGTGACCTGGATCTGGGTGACCTGGAGCCGGGTGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTTCGAGAAAATGAGATT</pcr_primer_p1>
		<pcr_primer_p2>CCTCTTCCTTTATAGTATTTCTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>526</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAARCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32064</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>157140</contig_pos>
        <strand></strand>
        <context>aaaaggatga[A/T]gttttaagga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGA</left_flank>
        <right_flank>GTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGAAGAGAAATTTGAAGAGATAGAGAGAATTAGAGAAAAAATGAGATAATTAGTGAGGTTGTCGAAAAAAAAGGGAGTAGGATGAAGACTACTGATGAGGAATTAGGATGAATGGAAATTTGAGAATCTAAAATTCTTTTTGAAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGGAAAGTGGAGGGTCAAATCAGTTCTCGCTTTCTCTGGGCTCCAGAGAAGGTGACCCGGGGATCTTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCTTAGGCCCGGGTCCTGGGTCCGGGTTTGGGTGACCCTGACCGGGTGACCTGGATCCGGGTGACCTGAATCCGGGTGACCCTGACCGGGTGACCTGGATCTGGGTGACCTGGAGCCGGGTGACCTGGATCCGGGTGGCCTGAATCCGGGTGACCCTGACCGGGTGACCTGGATCCTTGTGACCTGGATCTGGGTGACCTGGAGCCGGGTGACCTGGATCC</canonical>
            <polymorphic>ATTGAAGAGAAATTTGAAGAGATAGAGAGAATTAGAGAAAAAATGAGATAATTAGTGAGGTTGTCGAAAAAAAAGGGAGTAGGATGAAGACTACTGATGAGGAATTAGGATGAATGGAAATTTGAGAATCTAAAATTCTTTTTGAAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAWGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGGAAAGTGGAGGGTCAAATCAGTTCTCGCTTTCTCTGGGCTCCAGAGAAGGTGACCCGGGGATCTTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCTTAGGCCCGGGTCCTGGGTCCGGGTTTGGGTGACCCTGACCGGGTGACCTGGATCCGGGTGACCTGAATCCGGGTGACCCTGACCGGGTGACCTGGATCTGGGTGACCTGGAGCCGGGTGACCTGGATCCGGGTGGCCTGAATCCGGGTGACCCTGACCGGGTGACCTGGATCCTTGTGACCTGGATCTGGGTGACCTGGAGCCGGGTGACCTGGATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTTCGAGAAAATGAGATT</pcr_primer_p1>
		<pcr_primer_p2>CCTCTTCCTTTATAGTATTTCTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>526</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAWGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32065</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>157169</contig_pos>
        <strand></strand>
        <context>gatttcaaaa[G/A]agaaaaatca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAA</left_flank>
        <right_flank>AGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTAGAGAAAAAATGAGATAATTAGTGAGGTTGTCGAAAAAAAAGGGAGTAGGATGAAGACTACTGATGAGGAATTAGGATGAATGGAAATTTGAGAATCTAAAATTCTTTTTGAAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGGAAAGTGGAGGGTCAAATCAGTTCTCGCTTTCTCTGGGCTCCAGAGAAGGTGACCCGGGGATCTTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCTTAGGCCCGGGTCCTGGGTCCGGGTTTGGGTGACCCTGACCGGGTGACCTGGATCCGGGTGACCTGAATCCGGGTGACCCTGACCGGGTGACCTGGATCTGGGTGACCTGGAGCCGGGTGACCTGGATCCGGGTGGCCTGAATCCGGGTGACCCTGACCGGGTGACCTGGATCCTTGTGACCTGGATCTGGGTGACCTGGAGCCGGGTGACCTGGATCCGGGTGACCTGGGTCCGGGTGACCTGGATC</canonical>
            <polymorphic>AATTAGAGAAAAAATGAGATAATTAGTGAGGTTGTCGAAAAAAAAGGGAGTAGGATGAAGACTACTGATGAGGAATTAGGATGAATGGAAATTTGAGAATCTAAAATTCTTTTTGAAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAARAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGGAAAGTGGAGGGTCAAATCAGTTCTCGCTTTCTCTGGGCTCCAGAGAAGGTGACCCGGGGATCTTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCTTAGGCCCGGGTCCTGGGTCCGGGTTTGGGTGACCCTGACCGGGTGACCTGGATCCGGGTGACCTGAATCCGGGTGACCCTGACCGGGTGACCTGGATCTGGGTGACCTGGAGCCGGGTGACCTGGATCCGGGTGGCCTGAATCCGGGTGACCCTGACCGGGTGACCTGGATCCTTGTGACCTGGATCTGGGTGACCTGGAGCCGGGTGACCTGGATCCGGGTGACCTGGGTCCGGGTGACCTGGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTTCGAGAAAATGAGATT</pcr_primer_p1>
		<pcr_primer_p2>CCTCTTCCTTTATAGTATTTCTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>526</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAARAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32066</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>157245</contig_pos>
        <strand>+</strand>
        <context>AATTGAATTT[C/T]CCGTCAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTT</left_flank>
        <right_flank>CCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGATGAATGGAAATTTGAGAATCTAAAATTCTTTTTGAAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGGAAAGTGGAGGGTCAAATCAGTTCTCGCTTTCTCTGGGCTCCAGAGAAGGTGACCCGGGGATCTTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCTTAGGCCCGGGTCCTGGGTCCGGGTTTGGGTGACCCTGACCGGGTGACCTGGATCCGGGTGACCTGAATCCGGGTGACCCTGACCGGGTGACCTGGATCTGGGTGACCTGGAGCCGGGTGACCTGGATCCGGGTGGCCTGAATCCGGGTGACCCTGACCGGGTGACCTGGATCCTTGTGACCTGGATCTGGGTGACCTGGAGCCGGGTGACCTGGATCCGGGTGACCTGGGTCCGGGTGACCTGGATCCGGGTGACCTGCATCTGGGTGACCTGGGTCCGGGTGACCTGGGTCCGGGTGACCTGGATCCAGGACCTAGGACCCA</canonical>
            <polymorphic>TAGGATGAATGGAAATTTGAGAATCTAAAATTCTTTTTGAAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTYCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGGAAAGTGGAGGGTCAAATCAGTTCTCGCTTTCTCTGGGCTCCAGAGAAGGTGACCCGGGGATCTTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCTTAGGCCCGGGTCCTGGGTCCGGGTTTGGGTGACCCTGACCGGGTGACCTGGATCCGGGTGACCTGAATCCGGGTGACCCTGACCGGGTGACCTGGATCTGGGTGACCTGGAGCCGGGTGACCTGGATCCGGGTGGCCTGAATCCGGGTGACCCTGACCGGGTGACCTGGATCCTTGTGACCTGGATCTGGGTGACCTGGAGCCGGGTGACCTGGATCCGGGTGACCTGGGTCCGGGTGACCTGGATCCGGGTGACCTGCATCTGGGTGACCTGGGTCCGGGTGACCTGGGTCCGGGTGACCTGGATCCAGGACCTAGGACCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTTCGAGAAAATGAGATT</pcr_primer_p1>
		<pcr_primer_p2>CCTCTTCCTTTATAGTATTTCTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>526</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTYCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32067</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>157267</contig_pos>
        <strand>+</strand>
        <context>TCCACGACCC[C/T]TGATGCCCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCC</left_flank>
        <right_flank>TGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGGAAAGTGG</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTAAAATTCTTTTTGAAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGGAAAGTGGAGGGTCAAATCAGTTCTCGCTTTCTCTGGGCTCCAGAGAAGGTGACCCGGGGATCTTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCTTAGGCCCGGGTCCTGGGTCCGGGTTTGGGTGACCCTGACCGGGTGACCTGGATCCGGGTGACCTGAATCCGGGTGACCCTGACCGGGTGACCTGGATCTGGGTGACCTGGAGCCGGGTGACCTGGATCCGGGTGGCCTGAATCCGGGTGACCCTGACCGGGTGACCTGGATCCTTGTGACCTGGATCTGGGTGACCTGGAGCCGGGTGACCTGGATCCGGGTGACCTGGGTCCGGGTGACCTGGATCCGGGTGACCTGCATCTGGGTGACCTGGGTCCGGGTGACCTGGGTCCGGGTGACCTGGATCCAGGACCTAGGACCCAGGATACCCGGGTTACCTTCTCT</canonical>
            <polymorphic>ATCTAAAATTCTTTTTGAAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCYTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGGAAAGTGGAGGGTCAAATCAGTTCTCGCTTTCTCTGGGCTCCAGAGAAGGTGACCCGGGGATCTTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCTTAGGCCCGGGTCCTGGGTCCGGGTTTGGGTGACCCTGACCGGGTGACCTGGATCCGGGTGACCTGAATCCGGGTGACCCTGACCGGGTGACCTGGATCTGGGTGACCTGGAGCCGGGTGACCTGGATCCGGGTGGCCTGAATCCGGGTGACCCTGACCGGGTGACCTGGATCCTTGTGACCTGGATCTGGGTGACCTGGAGCCGGGTGACCTGGATCCGGGTGACCTGGGTCCGGGTGACCTGGATCCGGGTGACCTGCATCTGGGTGACCTGGGTCCGGGTGACCTGGGTCCGGGTGACCTGGATCCAGGACCTAGGACCCAGGATACCCGGGTTACCTTCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTTCGAGAAAATGAGATT</pcr_primer_p1>
		<pcr_primer_p2>CTCCACTTTCCTCTTCCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>535</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGGAAAGTGGAG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCYTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGGAAAGTGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32068</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>157280</contig_pos>
        <strand>+</strand>
        <context>ATGCCCCATT[A/G]ACCCCAGAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATT</left_flank>
        <right_flank>ACCCCAGAAGAAATACTATAAAGGAAGAGGAAAGTGGAGGGTCAAATCAG</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGGAAAGTGGAGGGTCAAATCAGTTCTCGCTTTCTCTGGGCTCCAGAGAAGGTGACCCGGGGATCTTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCTTAGGCCCGGGTCCTGGGTCCGGGTTTGGGTGACCCTGACCGGGTGACCTGGATCCGGGTGACCTGAATCCGGGTGACCCTGACCGGGTGACCTGGATCTGGGTGACCTGGAGCCGGGTGACCTGGATCCGGGTGGCCTGAATCCGGGTGACCCTGACCGGGTGACCTGGATCCTTGTGACCTGGATCTGGGTGACCTGGAGCCGGGTGACCTGGATCCGGGTGACCTGGGTCCGGGTGACCTGGATCCGGGTGACCTGCATCTGGGTGACCTGGGTCCGGGTGACCTGGGTCCGGGTGACCTGGATCCAGGACCTAGGACCCAGGATACCCGGGTTACCTTCTCTGGAGCACAGAGAA</canonical>
            <polymorphic>TTTGAAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTRACCCCAGAAGAAATACTATAAAGGAAGAGGAAAGTGGAGGGTCAAATCAGTTCTCGCTTTCTCTGGGCTCCAGAGAAGGTGACCCGGGGATCTTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCCTAGGTCCTGGGTCTTAGGCCCGGGTCCTGGGTCCGGGTTTGGGTGACCCTGACCGGGTGACCTGGATCCGGGTGACCTGAATCCGGGTGACCCTGACCGGGTGACCTGGATCTGGGTGACCTGGAGCCGGGTGACCTGGATCCGGGTGGCCTGAATCCGGGTGACCCTGACCGGGTGACCTGGATCCTTGTGACCTGGATCTGGGTGACCTGGAGCCGGGTGACCTGGATCCGGGTGACCTGGGTCCGGGTGACCTGGATCCGGGTGACCTGCATCTGGGTGACCTGGGTCCGGGTGACCTGGGTCCGGGTGACCTGGATCCAGGACCTAGGACCCAGGATACCCGGGTTACCTTCTCTGGAGCACAGAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 256 90 86 44 22</canonical_bands>
                <polymorphic_bands>592 256 86 44 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTTCGAGAAAATGAGATT</pcr_primer_p1>
		<pcr_primer_p2>ACTGATTTGACCCTCCACTT</pcr_primer_p2>
		<pcr_amplicon_size>547</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTAACCCCAGAAGAAATACTATAAAGGAAGAGGAAAGTGGAGGGTCAAATCAGT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTTCGAGAAAATGAGATTTACTCAAGTTTTTGAGCTAATGTATCTTGTTTCTCGTAAAAGATATCATAAAATGGTCAACTGATAAAATGTTTATCATATTATCACCAACGTTTTGCTAGTTTATCACTTCTTGATATCTTCTACAGAAAATGAGATAAATTGGCTCAAATTCAAACGTTTGAGTTTGGGGTCTAGCCAAATTTTGATGAATTTTTTCTCGGTCCCTGTGAAAGATATCCAAACATTTTAAAAAGCAAAAATGTTTGTCTTAAAACCAGCAAAATTTTATTAGTTCACAATTTTTTTGATAACTCGAACAGGAAAAGAGACAATTGAGGTAAAAAGGATGAAGTTTTAAGGAGTTTCACAGATTTCAAAAGAGAAAAATCAACAGTTATTTAAACGTGATGAAAAGAACCTTTTTGTGGATAAAAAAGTGTTCAAAAATTGAATTTTCCGTCAAAAAATCCACGACCCTTGATGCCCCATTRACCCCAGAAGAAATACTATAAAGGAAGAGGAAAGTGGAGGGTCAAATCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32069</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>166365</contig_pos>
        <strand>+</strand>
        <context>CACAACAAAA[A/G]TATAGAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAATATTTTTTCATCAAACAGACAAACAATCCAAAAAGCACAACAAAA</left_flank>
        <right_flank>TATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGATACTATTTCTACTGCTTAACAGGTGAAAAAGCTCATTTTACTACTGCCGGGCAGTACCAAAATCGCCACGTGGCAAGTTCTACTACTGCTGAAGGATCTAATTTTCAGAATTTAACGTCCTCAAAATCTATAGAAGCCGGAAAATAATATTTCAAATTTCAGTAGCCCTGATTTTCAGCTTTCATTTAAAACAAGAACCAATTTTCTAACTTGATTTTGAGCAAAGTTATAGGTGTCTAAATTTGTGGGTAGTTCAGTTTTGATACTGCTTGGCAGGTGCAAAAACGCCACGTGCATACTTGTAACGGGCCGGACTTTTTCCCGAATTTCGGAGGCCCGGCCCGGCGGGCCTGTCATTGCACAAGTATTGAAAATTTCAAAAAACACATAAGGGGGACCCTTATGTGATTTGTTTTCGATCAAAAAATATTTTTCGAGTTTTTAAAAAATATTTTTTCATCAAACAGACAAACAATCCAAAAAGCACAACAAAAGTATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATATTTGCTACAGGGCCTTGAAATTTTAATCATGCCCGGCCCGGAATTTTACAAGTATGGCCACGTGGGAAATTTTCTACTGCCCAACAACCGGGCAGTACCAAAATAATAGCTTTTCACATTGACAATCAGTTTTTCTCATACTTGCAACCGAGCCTTTGCCGGGCCTTCGCGGGATCTGTCATAGCTTCTTTTAGAATTAATATTTTTCACTCAACTAGCCTTCATGACAAGGCCCGGCCATTTCACTTGTAACTTTGTTTATAGAAAAGACGCAGCTTTCCAAATAGTATCAGTTTGTACTACTCGCCGAGTTCTATCATATCTGATTTAGATAATCTGAAAATATTGTTTCTGAAAGAAACTATGGCAAGACCCGCGAAGGGCCCGGTTGCAAGTATGGTTTTTCTAGCTCAAAAATGTCTTTTTTCACAATTTTGGAGTATTCACATA</canonical>
            <polymorphic>TTTGATACTATTTCTACTGCTTAACAGGTGAAAAAGCTCATTTTACTACTGCCGGGCAGTACCAAAATCGCCACGTGGCAAGTTCTACTACTGCTGAAGGATCTAATTTTCAGAATTTAACGTCCTCAAAATCTATAGAAGCCGGAAAATAATATTTCAAATTTCAGTAGCCCTGATTTTCAGCTTTCATTTAAAACAAGAACCAATTTTCTAACTTGATTTTGAGCAAAGTTATAGGTGTCTAAATTTGTGGGTAGTTCAGTTTTGATACTGCTTGGCAGGTGCAAAAACGCCACGTGCATACTTGTAACGGGCCGGACTTTTTCCCGAATTTCGGAGGCCCGGCCCGGCGGGCCTGTCATTGCACAAGTATTGAAAATTTCAAAAAACACATAAGGGGGACCCTTATGTGATTTGTTTTCGATCAAAAAATATTTTTCGAGTTTTTAAAAAATATTTTTTCATCAAACAGACAAACAATCCAAAAAGCACAACAAAARTATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATATTTGCTACAGGGCCTTGAAATTTTAATCATGCCCGGCCCGGAATTTTACAAGTATGGCCACGTGGGAAATTTTCTACTGCCCAACAACCGGGCAGTACCAAAATAATAGCTTTTCACATTGACAATCAGTTTTTCTCATACTTGCAACCGAGCCTTTGCCGGGCCTTCGCGGGATCTGTCATAGCTTCTTTTAGAATTAATATTTTTCACTCAACTAGCCTTCATGACAAGGCCCGGCCATTTCACTTGTAACTTTGTTTATAGAAAAGACGCAGCTTTCCAAATAGTATCAGTTTGTACTACTCGCCGAGTTCTATCATATCTGATTTAGATAATCTGAAAATATTGTTTCTGAAAGAAACTATGGCAAGACCCGCGAAGGGCCCGGTTGCAAGTATGGTTTTTCTAGCTCAAAAATGTCTTTTTTCACAATTTTGGAGTATTCACATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCTGTCATTGCACAAGTAT</pcr_primer_p1>
		<pcr_primer_p2>AGCAAATATTTTGTCATTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>203</pcr_amplicon_size>
		<canonical_amplicon>GCCTGTCATTGCACAAGTATTGAAAATTTCAAAAAACACATAAGGGGGACCCTTATGTGATTTGTTTTCGATCAAAAAATATTTTTCGAGTTTTTAAAAAATATTTTTTCATCAAACAGACAAACAATCCAAAAAGCACAACAAAAGTATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATATTTGCT</canonical_amplicon>
		<polymorphic_amplicon>GCCTGTCATTGCACAAGTATTGAAAATTTCAAAAAACACATAAGGGGGACCCTTATGTGATTTGTTTTCGATCAAAAAATATTTTTCGAGTTTTTAAAAAATATTTTTTCATCAAACAGACAAACAATCCAAAAAGCACAACAAAARTATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATATTTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32070</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>166566</contig_pos>
        <strand>+</strand>
        <context>CTTGCAACCG[A/G]GCCTTTGCCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATAATAGCTTTTCACATTGACAATCAGTTTTTCTCATACTTGCAACCG</left_flank>
        <right_flank>GCCTTTGCCGGGCCTTCGCGGGATCTGTCATAGCTTCTTTTAGAATTAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCAATTTTCTAACTTGATTTTGAGCAAAGTTATAGGTGTCTAAATTTGTGGGTAGTTCAGTTTTGATACTGCTTGGCAGGTGCAAAAACGCCACGTGCATACTTGTAACGGGCCGGACTTTTTCCCGAATTTCGGAGGCCCGGCCCGGCGGGCCTGTCATTGCACAAGTATTGAAAATTTCAAAAAACACATAAGGGGGACCCTTATGTGATTTGTTTTCGATCAAAAAATATTTTTCGAGTTTTTAAAAAATATTTTTTCATCAAACAGACAAACAATCCAAAAAGCACAACAAAAGTATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATATTTGCTACAGGGCCTTGAAATTTTAATCATGCCCGGCCCGGAATTTTACAAGTATGGCCACGTGGGAAATTTTCTACTGCCCAACAACCGGGCAGTACCAAAATAATAGCTTTTCACATTGACAATCAGTTTTTCTCATACTTGCAACCGAGCCTTTGCCGGGCCTTCGCGGGATCTGTCATAGCTTCTTTTAGAATTAATATTTTTCACTCAACTAGCCTTCATGACAAGGCCCGGCCATTTCACTTGTAACTTTGTTTATAGAAAAGACGCAGCTTTCCAAATAGTATCAGTTTGTACTACTCGCCGAGTTCTATCATATCTGATTTAGATAATCTGAAAATATTGTTTCTGAAAGAAACTATGGCAAGACCCGCGAAGGGCCCGGTTGCAAGTATGGTTTTTCTAGCTCAAAAATGTCTTTTTTCACAATTTTGGAGTATTCACATATGCTGAATTCAGAAATCCACACCTAGAACAGTCTTCTCGAAAAGTTCGGCTTCGGCGTTCGCGTATTCTCTAGCGAATTGCAATTCGGTTTCCGACAGCAGCTCGCTCTGATTCTCCTGTGTTCGTCGTTGGTGCTGATCAATCGCGTCGTTCGGGTTGGATTCGATTTTCTGCAGACGGCATCTCATGTAATCCGACGTC</canonical>
            <polymorphic>ACCAATTTTCTAACTTGATTTTGAGCAAAGTTATAGGTGTCTAAATTTGTGGGTAGTTCAGTTTTGATACTGCTTGGCAGGTGCAAAAACGCCACGTGCATACTTGTAACGGGCCGGACTTTTTCCCGAATTTCGGAGGCCCGGCCCGGCGGGCCTGTCATTGCACAAGTATTGAAAATTTCAAAAAACACATAAGGGGGACCCTTATGTGATTTGTTTTCGATCAAAAAATATTTTTCGAGTTTTTAAAAAATATTTTTTCATCAAACAGACAAACAATCCAAAAAGCACAACAAAAGTATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATATTTGCTACAGGGCCTTGAAATTTTAATCATGCCCGGCCCGGAATTTTACAAGTATGGCCACGTGGGAAATTTTCTACTGCCCAACAACCGGGCAGTACCAAAATAATAGCTTTTCACATTGACAATCAGTTTTTCTCATACTTGCAACCGRGCCTTTGCCGGGCCTTCGCGGGATCTGTCATAGCTTCTTTTAGAATTAATATTTTTCACTCAACTAGCCTTCATGACAAGGCCCGGCCATTTCACTTGTAACTTTGTTTATAGAAAAGACGCAGCTTTCCAAATAGTATCAGTTTGTACTACTCGCCGAGTTCTATCATATCTGATTTAGATAATCTGAAAATATTGTTTCTGAAAGAAACTATGGCAAGACCCGCGAAGGGCCCGGTTGCAAGTATGGTTTTTCTAGCTCAAAAATGTCTTTTTTCACAATTTTGGAGTATTCACATATGCTGAATTCAGAAATCCACACCTAGAACAGTCTTCTCGAAAAGTTCGGCTTCGGCGTTCGCGTATTCTCTAGCGAATTGCAATTCGGTTTCCGACAGCAGCTCGCTCTGATTCTCCTGTGTTCGTCGTTGGTGCTGATCAATCGCGTCGTTCGGGTTGGATTCGATTTTCTGCAGACGGCATCTCATGTAATCCGACGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>167 113 108 100 90 52 52 43 41 38 34 26 26 24 21 21 14 11 9 5 5</canonical_bands>
                <polymorphic_bands>167 113 108 100 90 54 52 52 41 38 34 26 26 24 21 21 14 9 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACCAAAATAATAGCTTTTCACAT</pcr_primer_p1>
		<pcr_primer_p2>TTGAGCTAGAAAAACCATACTTG</pcr_primer_p2>
		<pcr_amplicon_size>319</pcr_amplicon_size>
		<canonical_amplicon>TACCAAAATAATAGCTTTTCACATTGACAATCAGTTTTTCTCATACTTGCAACCGAGCCTTTGCCGGGCCTTCGCGGGATCTGTCATAGCTTCTTTTAGAATTAATATTTTTCACTCAACTAGCCTTCATGACAAGGCCCGGCCATTTCACTTGTAACTTTGTTTATAGAAAAGACGCAGCTTTCCAAATAGTATCAGTTTGTACTACTCGCCGAGTTCTATCATATCTGATTTAGATAATCTGAAAATATTGTTTCTGAAAGAAACTATGGCAAGACCCGCGAAGGGCCCGGTTGCAAGTATGGTTTTTCTAGCTCAA</canonical_amplicon>
		<polymorphic_amplicon>TACCAAAATAATAGCTTTTCACATTGACAATCAGTTTTTCTCATACTTGCAACCGRGCCTTTGCCGGGCCTTCGCGGGATCTGTCATAGCTTCTTTTAGAATTAATATTTTTCACTCAACTAGCCTTCATGACAAGGCCCGGCCATTTCACTTGTAACTTTGTTTATAGAAAAGACGCAGCTTTCCAAATAGTATCAGTTTGTACTACTCGCCGAGTTCTATCATATCTGATTTAGATAATCTGAAAATATTGTTTCTGAAAGAAACTATGGCAAGACCCGCGAAGGGCCCGGTTGCAAGTATGGTTTTTCTAGCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32071</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>166630</contig_pos>
        <strand>+</strand>
        <context>TTTCACTCAA[C/T]TAGCCTTCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTCGCGGGATCTGTCATAGCTTCTTTTAGAATTAATATTTTTCACTCAA</left_flank>
        <right_flank>TAGCCTTCATGACAAGGCCCGGCCATTTCACTTGTAACTTTGTTTATAGA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATACTGCTTGGCAGGTGCAAAAACGCCACGTGCATACTTGTAACGGGCCGGACTTTTTCCCGAATTTCGGAGGCCCGGCCCGGCGGGCCTGTCATTGCACAAGTATTGAAAATTTCAAAAAACACATAAGGGGGACCCTTATGTGATTTGTTTTCGATCAAAAAATATTTTTCGAGTTTTTAAAAAATATTTTTTCATCAAACAGACAAACAATCCAAAAAGCACAACAAAAGTATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATATTTGCTACAGGGCCTTGAAATTTTAATCATGCCCGGCCCGGAATTTTACAAGTATGGCCACGTGGGAAATTTTCTACTGCCCAACAACCGGGCAGTACCAAAATAATAGCTTTTCACATTGACAATCAGTTTTTCTCATACTTGCAACCGAGCCTTTGCCGGGCCTTCGCGGGATCTGTCATAGCTTCTTTTAGAATTAATATTTTTCACTCAACTAGCCTTCATGACAAGGCCCGGCCATTTCACTTGTAACTTTGTTTATAGAAAAGACGCAGCTTTCCAAATAGTATCAGTTTGTACTACTCGCCGAGTTCTATCATATCTGATTTAGATAATCTGAAAATATTGTTTCTGAAAGAAACTATGGCAAGACCCGCGAAGGGCCCGGTTGCAAGTATGGTTTTTCTAGCTCAAAAATGTCTTTTTTCACAATTTTGGAGTATTCACATATGCTGAATTCAGAAATCCACACCTAGAACAGTCTTCTCGAAAAGTTCGGCTTCGGCGTTCGCGTATTCTCTAGCGAATTGCAATTCGGTTTCCGACAGCAGCTCGCTCTGATTCTCCTGTGTTCGTCGTTGGTGCTGATCAATCGCGTCGTTCGGGTTGGATTCGATTTTCTGCAGACGGCATCTCATGTAATCCGACGTCATAAAACTGATTCGCTGAAGTTCCATCCGGTGCAGCGAGATGCGCAACTGCATCTTATCCGCCT</canonical>
            <polymorphic>TGATACTGCTTGGCAGGTGCAAAAACGCCACGTGCATACTTGTAACGGGCCGGACTTTTTCCCGAATTTCGGAGGCCCGGCCCGGCGGGCCTGTCATTGCACAAGTATTGAAAATTTCAAAAAACACATAAGGGGGACCCTTATGTGATTTGTTTTCGATCAAAAAATATTTTTCGAGTTTTTAAAAAATATTTTTTCATCAAACAGACAAACAATCCAAAAAGCACAACAAAAGTATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATATTTGCTACAGGGCCTTGAAATTTTAATCATGCCCGGCCCGGAATTTTACAAGTATGGCCACGTGGGAAATTTTCTACTGCCCAACAACCGGGCAGTACCAAAATAATAGCTTTTCACATTGACAATCAGTTTTTCTCATACTTGCAACCGAGCCTTTGCCGGGCCTTCGCGGGATCTGTCATAGCTTCTTTTAGAATTAATATTTTTCACTCAAYTAGCCTTCATGACAAGGCCCGGCCATTTCACTTGTAACTTTGTTTATAGAAAAGACGCAGCTTTCCAAATAGTATCAGTTTGTACTACTCGCCGAGTTCTATCATATCTGATTTAGATAATCTGAAAATATTGTTTCTGAAAGAAACTATGGCAAGACCCGCGAAGGGCCCGGTTGCAAGTATGGTTTTTCTAGCTCAAAAATGTCTTTTTTCACAATTTTGGAGTATTCACATATGCTGAATTCAGAAATCCACACCTAGAACAGTCTTCTCGAAAAGTTCGGCTTCGGCGTTCGCGTATTCTCTAGCGAATTGCAATTCGGTTTCCGACAGCAGCTCGCTCTGATTCTCCTGTGTTCGTCGTTGGTGCTGATCAATCGCGTCGTTCGGGTTGGATTCGATTTTCTGCAGACGGCATCTCATGTAATCCGACGTCATAAAACTGATTCGCTGAAGTTCCATCCGGTGCAGCGAGATGCGCAACTGCATCTTATCCGCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 195 191 67 47</canonical_bands>
                <polymorphic_bands>691 195 67 47</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACAATCAGTTTTTCTCATACTTG</pcr_primer_p1>
		<pcr_primer_p2>TTGAGCTAGAAAAACCATACTTG</pcr_primer_p2>
		<pcr_amplicon_size>294</pcr_amplicon_size>
		<canonical_amplicon>GACAATCAGTTTTTCTCATACTTGCAACCGAGCCTTTGCCGGGCCTTCGCGGGATCTGTCATAGCTTCTTTTAGAATTAATATTTTTCACTCAACTAGCCTTCATGACAAGGCCCGGCCATTTCACTTGTAACTTTGTTTATAGAAAAGACGCAGCTTTCCAAATAGTATCAGTTTGTACTACTCGCCGAGTTCTATCATATCTGATTTAGATAATCTGAAAATATTGTTTCTGAAAGAAACTATGGCAAGACCCGCGAAGGGCCCGGTTGCAAGTATGGTTTTTCTAGCTCAA</canonical_amplicon>
		<polymorphic_amplicon>GACAATCAGTTTTTCTCATACTTGCAACCGAGCCTTTGCCGGGCCTTCGCGGGATCTGTCATAGCTTCTTTTAGAATTAATATTTTTCACTCAAYTAGCCTTCATGACAAGGCCCGGCCATTTCACTTGTAACTTTGTTTATAGAAAAGACGCAGCTTTCCAAATAGTATCAGTTTGTACTACTCGCCGAGTTCTATCATATCTGATTTAGATAATCTGAAAATATTGTTTCTGAAAGAAACTATGGCAAGACCCGCGAAGGGCCCGGTTGCAAGTATGGTTTTTCTAGCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32072</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>166666</contig_pos>
        <strand></strand>
        <context>tttcacttgt[A/T]actttgttta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATTTTTCACTCAACTAGCCTTCATGACAAGGCCCGGCCATTTCACTTGT</left_flank>
        <right_flank>ACTTTGTTTATAGAAAAGACGCAGCTTTCCAAATAGTATCAGTTTGTACT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTTGTAACGGGCCGGACTTTTTCCCGAATTTCGGAGGCCCGGCCCGGCGGGCCTGTCATTGCACAAGTATTGAAAATTTCAAAAAACACATAAGGGGGACCCTTATGTGATTTGTTTTCGATCAAAAAATATTTTTCGAGTTTTTAAAAAATATTTTTTCATCAAACAGACAAACAATCCAAAAAGCACAACAAAAGTATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATATTTGCTACAGGGCCTTGAAATTTTAATCATGCCCGGCCCGGAATTTTACAAGTATGGCCACGTGGGAAATTTTCTACTGCCCAACAACCGGGCAGTACCAAAATAATAGCTTTTCACATTGACAATCAGTTTTTCTCATACTTGCAACCGAGCCTTTGCCGGGCCTTCGCGGGATCTGTCATAGCTTCTTTTAGAATTAATATTTTTCACTCAACTAGCCTTCATGACAAGGCCCGGCCATTTCACTTGTAACTTTGTTTATAGAAAAGACGCAGCTTTCCAAATAGTATCAGTTTGTACTACTCGCCGAGTTCTATCATATCTGATTTAGATAATCTGAAAATATTGTTTCTGAAAGAAACTATGGCAAGACCCGCGAAGGGCCCGGTTGCAAGTATGGTTTTTCTAGCTCAAAAATGTCTTTTTTCACAATTTTGGAGTATTCACATATGCTGAATTCAGAAATCCACACCTAGAACAGTCTTCTCGAAAAGTTCGGCTTCGGCGTTCGCGTATTCTCTAGCGAATTGCAATTCGGTTTCCGACAGCAGCTCGCTCTGATTCTCCTGTGTTCGTCGTTGGTGCTGATCAATCGCGTCGTTCGGGTTGGATTCGATTTTCTGCAGACGGCATCTCATGTAATCCGACGTCATAAAACTGATTCGCTGAAGTTCCATCCGGTGCAGCGAGATGCGCAACTGCATCTTATCCGCCTGCCTTCCGATATTATCCTCCATCCCTTTGATTTGAT</canonical>
            <polymorphic>TACTTGTAACGGGCCGGACTTTTTCCCGAATTTCGGAGGCCCGGCCCGGCGGGCCTGTCATTGCACAAGTATTGAAAATTTCAAAAAACACATAAGGGGGACCCTTATGTGATTTGTTTTCGATCAAAAAATATTTTTCGAGTTTTTAAAAAATATTTTTTCATCAAACAGACAAACAATCCAAAAAGCACAACAAAAGTATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATATTTGCTACAGGGCCTTGAAATTTTAATCATGCCCGGCCCGGAATTTTACAAGTATGGCCACGTGGGAAATTTTCTACTGCCCAACAACCGGGCAGTACCAAAATAATAGCTTTTCACATTGACAATCAGTTTTTCTCATACTTGCAACCGAGCCTTTGCCGGGCCTTCGCGGGATCTGTCATAGCTTCTTTTAGAATTAATATTTTTCACTCAACTAGCCTTCATGACAAGGCCCGGCCATTTCACTTGTWACTTTGTTTATAGAAAAGACGCAGCTTTCCAAATAGTATCAGTTTGTACTACTCGCCGAGTTCTATCATATCTGATTTAGATAATCTGAAAATATTGTTTCTGAAAGAAACTATGGCAAGACCCGCGAAGGGCCCGGTTGCAAGTATGGTTTTTCTAGCTCAAAAATGTCTTTTTTCACAATTTTGGAGTATTCACATATGCTGAATTCAGAAATCCACACCTAGAACAGTCTTCTCGAAAAGTTCGGCTTCGGCGTTCGCGTATTCTCTAGCGAATTGCAATTCGGTTTCCGACAGCAGCTCGCTCTGATTCTCCTGTGTTCGTCGTTGGTGCTGATCAATCGCGTCGTTCGGGTTGGATTCGATTTTCTGCAGACGGCATCTCATGTAATCCGACGTCATAAAACTGATTCGCTGAAGTTCCATCCGGTGCAGCGAGATGCGCAACTGCATCTTATCCGCCTGCCTTCCGATATTATCCTCCATCCCTTTGATTTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATCTGTCATAGCTTCTTTTAG</pcr_primer_p1>
		<pcr_primer_p2>TTGAGCTAGAAAAACCATACTTG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GGATCTGTCATAGCTTCTTTTAGAATTAATATTTTTCACTCAACTAGCCTTCATGACAAGGCCCGGCCATTTCACTTGTAACTTTGTTTATAGAAAAGACGCAGCTTTCCAAATAGTATCAGTTTGTACTACTCGCCGAGTTCTATCATATCTGATTTAGATAATCTGAAAATATTGTTTCTGAAAGAAACTATGGCAAGACCCGCGAAGGGCCCGGTTGCAAGTATGGTTTTTCTAGCTCAA</canonical_amplicon>
		<polymorphic_amplicon>GGATCTGTCATAGCTTCTTTTAGAATTAATATTTTTCACTCAACTAGCCTTCATGACAAGGCCCGGCCATTTCACTTGTWACTTTGTTTATAGAAAAGACGCAGCTTTCCAAATAGTATCAGTTTGTACTACTCGCCGAGTTCTATCATATCTGATTTAGATAATCTGAAAATATTGTTTCTGAAAGAAACTATGGCAAGACCCGCGAAGGGCCCGGTTGCAAGTATGGTTTTTCTAGCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32073</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>166742</contig_pos>
        <strand>+</strand>
        <context>tcatatctga[A/G]ttagataatc</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCCAAATAGTATCAGTTTGTACTACTCGCCGAGTTCTATCATATCTGA</left_flank>
        <right_flank>TTAGATAATCTGAAAATATTGTTTCTGAAAGAAACTATGGCAAGACCCGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTCAAAAAACACATAAGGGGGACCCTTATGTGATTTGTTTTCGATCAAAAAATATTTTTCGAGTTTTTAAAAAATATTTTTTCATCAAACAGACAAACAATCCAAAAAGCACAACAAAAGTATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATATTTGCTACAGGGCCTTGAAATTTTAATCATGCCCGGCCCGGAATTTTACAAGTATGGCCACGTGGGAAATTTTCTACTGCCCAACAACCGGGCAGTACCAAAATAATAGCTTTTCACATTGACAATCAGTTTTTCTCATACTTGCAACCGAGCCTTTGCCGGGCCTTCGCGGGATCTGTCATAGCTTCTTTTAGAATTAATATTTTTCACTCAACTAGCCTTCATGACAAGGCCCGGCCATTTCACTTGTAACTTTGTTTATAGAAAAGACGCAGCTTTCCAAATAGTATCAGTTTGTACTACTCGCCGAGTTCTATCATATCTGATTTAGATAATCTGAAAATATTGTTTCTGAAAGAAACTATGGCAAGACCCGCGAAGGGCCCGGTTGCAAGTATGGTTTTTCTAGCTCAAAAATGTCTTTTTTCACAATTTTGGAGTATTCACATATGCTGAATTCAGAAATCCACACCTAGAACAGTCTTCTCGAAAAGTTCGGCTTCGGCGTTCGCGTATTCTCTAGCGAATTGCAATTCGGTTTCCGACAGCAGCTCGCTCTGATTCTCCTGTGTTCGTCGTTGGTGCTGATCAATCGCGTCGTTCGGGTTGGATTCGATTTTCTGCAGACGGCATCTCATGTAATCCGACGTCATAAAACTGATTCGCTGAAGTTCCATCCGGTGCAGCGAGATGCGCAACTGCATCTTATCCGCCTGCCTTCCGATATTATCCTCCATCCCTTTGATTTGATCTAAAAGAATGTCGACCAGTCCCATTTGCGTTGGAAGCAGACACGGAGCACACAGTTCATTTTGCCACATCATCGT</canonical>
            <polymorphic>AATTTCAAAAAACACATAAGGGGGACCCTTATGTGATTTGTTTTCGATCAAAAAATATTTTTCGAGTTTTTAAAAAATATTTTTTCATCAAACAGACAAACAATCCAAAAAGCACAACAAAAGTATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATATTTGCTACAGGGCCTTGAAATTTTAATCATGCCCGGCCCGGAATTTTACAAGTATGGCCACGTGGGAAATTTTCTACTGCCCAACAACCGGGCAGTACCAAAATAATAGCTTTTCACATTGACAATCAGTTTTTCTCATACTTGCAACCGAGCCTTTGCCGGGCCTTCGCGGGATCTGTCATAGCTTCTTTTAGAATTAATATTTTTCACTCAACTAGCCTTCATGACAAGGCCCGGCCATTTCACTTGTAACTTTGTTTATAGAAAAGACGCAGCTTTCCAAATAGTATCAGTTTGTACTACTCGCCGAGTTCTATCATATCTGARTTAGATAATCTGAAAATATTGTTTCTGAAAGAAACTATGGCAAGACCCGCGAAGGGCCCGGTTGCAAGTATGGTTTTTCTAGCTCAAAAATGTCTTTTTTCACAATTTTGGAGTATTCACATATGCTGAATTCAGAAATCCACACCTAGAACAGTCTTCTCGAAAAGTTCGGCTTCGGCGTTCGCGTATTCTCTAGCGAATTGCAATTCGGTTTCCGACAGCAGCTCGCTCTGATTCTCCTGTGTTCGTCGTTGGTGCTGATCAATCGCGTCGTTCGGGTTGGATTCGATTTTCTGCAGACGGCATCTCATGTAATCCGACGTCATAAAACTGATTCGCTGAAGTTCCATCCGGTGCAGCGAGATGCGCAACTGCATCTTATCCGCCTGCCTTCCGATATTATCCTCCATCCCTTTGATTTGATCTAAAAGAATGTCGACCAGTCCCATTTGCGTTGGAAGCAGACACGGAGCACACAGTTCATTTTGCCACATCATCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATCTGTCATAGCTTCTTTTAG</pcr_primer_p1>
		<pcr_primer_p2>TTGAGCTAGAAAAACCATACTTG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GGATCTGTCATAGCTTCTTTTAGAATTAATATTTTTCACTCAACTAGCCTTCATGACAAGGCCCGGCCATTTCACTTGTAACTTTGTTTATAGAAAAGACGCAGCTTTCCAAATAGTATCAGTTTGTACTACTCGCCGAGTTCTATCATATCTGATTTAGATAATCTGAAAATATTGTTTCTGAAAGAAACTATGGCAAGACCCGCGAAGGGCCCGGTTGCAAGTATGGTTTTTCTAGCTCAA</canonical_amplicon>
		<polymorphic_amplicon>GGATCTGTCATAGCTTCTTTTAGAATTAATATTTTTCACTCAACTAGCCTTCATGACAAGGCCCGGCCATTTCACTTGTAACTTTGTTTATAGAAAAGACGCAGCTTTCCAAATAGTATCAGTTTGTACTACTCGCCGAGTTCTATCATATCTGARTTAGATAATCTGAAAATATTGTTTCTGAAAGAAACTATGGCAAGACCCGCGAAGGGCCCGGTTGCAAGTATGGTTTTTCTAGCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32074</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>166787</contig_pos>
        <strand></strand>
        <context>ctatggCAAG[A/G]CCCGCGAAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGATTTAGATAATCTGAAAATATTGTTTCTGAAAGAAACTATGGCAAG</left_flank>
        <right_flank>CCCGCGAAGGGCCCGGTTGCAAGTATGGTTTTTCTAGCTCAAAAATGTCT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCAAAAAATATTTTTCGAGTTTTTAAAAAATATTTTTTCATCAAACAGACAAACAATCCAAAAAGCACAACAAAAGTATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATATTTGCTACAGGGCCTTGAAATTTTAATCATGCCCGGCCCGGAATTTTACAAGTATGGCCACGTGGGAAATTTTCTACTGCCCAACAACCGGGCAGTACCAAAATAATAGCTTTTCACATTGACAATCAGTTTTTCTCATACTTGCAACCGAGCCTTTGCCGGGCCTTCGCGGGATCTGTCATAGCTTCTTTTAGAATTAATATTTTTCACTCAACTAGCCTTCATGACAAGGCCCGGCCATTTCACTTGTAACTTTGTTTATAGAAAAGACGCAGCTTTCCAAATAGTATCAGTTTGTACTACTCGCCGAGTTCTATCATATCTGATTTAGATAATCTGAAAATATTGTTTCTGAAAGAAACTATGGCAAGACCCGCGAAGGGCCCGGTTGCAAGTATGGTTTTTCTAGCTCAAAAATGTCTTTTTTCACAATTTTGGAGTATTCACATATGCTGAATTCAGAAATCCACACCTAGAACAGTCTTCTCGAAAAGTTCGGCTTCGGCGTTCGCGTATTCTCTAGCGAATTGCAATTCGGTTTCCGACAGCAGCTCGCTCTGATTCTCCTGTGTTCGTCGTTGGTGCTGATCAATCGCGTCGTTCGGGTTGGATTCGATTTTCTGCAGACGGCATCTCATGTAATCCGACGTCATAAAACTGATTCGCTGAAGTTCCATCCGGTGCAGCGAGATGCGCAACTGCATCTTATCCGCCTGCCTTCCGATATTATCCTCCATCCCTTTGATTTGATCTAAAAGAATGTCGACCAGTCCCATTTGCGTTGGAAGCAGACACGGAGCACACAGTTCATTTTGCCACATCATCGTCATCTTCCGAATCACCTCTTCTAGTGTGATACTCTCTTCAAAATC</canonical>
            <polymorphic>GATCAAAAAATATTTTTCGAGTTTTTAAAAAATATTTTTTCATCAAACAGACAAACAATCCAAAAAGCACAACAAAAGTATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATATTTGCTACAGGGCCTTGAAATTTTAATCATGCCCGGCCCGGAATTTTACAAGTATGGCCACGTGGGAAATTTTCTACTGCCCAACAACCGGGCAGTACCAAAATAATAGCTTTTCACATTGACAATCAGTTTTTCTCATACTTGCAACCGAGCCTTTGCCGGGCCTTCGCGGGATCTGTCATAGCTTCTTTTAGAATTAATATTTTTCACTCAACTAGCCTTCATGACAAGGCCCGGCCATTTCACTTGTAACTTTGTTTATAGAAAAGACGCAGCTTTCCAAATAGTATCAGTTTGTACTACTCGCCGAGTTCTATCATATCTGATTTAGATAATCTGAAAATATTGTTTCTGAAAGAAACTATGGCAAGRCCCGCGAAGGGCCCGGTTGCAAGTATGGTTTTTCTAGCTCAAAAATGTCTTTTTTCACAATTTTGGAGTATTCACATATGCTGAATTCAGAAATCCACACCTAGAACAGTCTTCTCGAAAAGTTCGGCTTCGGCGTTCGCGTATTCTCTAGCGAATTGCAATTCGGTTTCCGACAGCAGCTCGCTCTGATTCTCCTGTGTTCGTCGTTGGTGCTGATCAATCGCGTCGTTCGGGTTGGATTCGATTTTCTGCAGACGGCATCTCATGTAATCCGACGTCATAAAACTGATTCGCTGAAGTTCCATCCGGTGCAGCGAGATGCGCAACTGCATCTTATCCGCCTGCCTTCCGATATTATCCTCCATCCCTTTGATTTGATCTAAAAGAATGTCGACCAGTCCCATTTGCGTTGGAAGCAGACACGGAGCACACAGTTCATTTTGCCACATCATCGTCATCTTCCGAATCACCTCTTCTAGTGTGATACTCTCTTCAAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATCTGTCATAGCTTCTTTTAG</pcr_primer_p1>
		<pcr_primer_p2>TTCTAGGTGTGGATTTCTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>GGATCTGTCATAGCTTCTTTTAGAATTAATATTTTTCACTCAACTAGCCTTCATGACAAGGCCCGGCCATTTCACTTGTAACTTTGTTTATAGAAAAGACGCAGCTTTCCAAATAGTATCAGTTTGTACTACTCGCCGAGTTCTATCATATCTGATTTAGATAATCTGAAAATATTGTTTCTGAAAGAAACTATGGCAAGACCCGCGAAGGGCCCGGTTGCAAGTATGGTTTTTCTAGCTCAAAAATGTCTTTTTTCACAATTTTGGAGTATTCACATATGCTGAATTCAGAAATCCACACCTAGAA</canonical_amplicon>
		<polymorphic_amplicon>GGATCTGTCATAGCTTCTTTTAGAATTAATATTTTTCACTCAACTAGCCTTCATGACAAGGCCCGGCCATTTCACTTGTAACTTTGTTTATAGAAAAGACGCAGCTTTCCAAATAGTATCAGTTTGTACTACTCGCCGAGTTCTATCATATCTGATTTAGATAATCTGAAAATATTGTTTCTGAAAGAAACTATGGCAAGRCCCGCGAAGGGCCCGGTTGCAAGTATGGTTTTTCTAGCTCAAAAATGTCTTTTTTCACAATTTTGGAGTATTCACATATGCTGAATTCAGAAATCCACACCTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32075</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>170372</contig_pos>
        <strand>+</strand>
        <context>AATGGGTCTG[C/T]TCGATGACAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGTAGTCGAACCAGGCAGCGTAGGATGGAACGACGATGTAATGGGTCTG</left_flank>
        <right_flank>TCGATGACATTGCCTTCGGATGGGGCTGGATTGTTGGCGGATTGAACGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATCGCTTGTTTTTGGTACTGATCAGTTTTGAGTCCTGGCTCGGAAATTGACTCAATCTCTGTCTTAATCTCCTCCTTAACAGCAGATTCTTCTTTAGCAGCGGCTGCGGCGTGTGGCGGATTCATTGGCTGAATTCCAGTTGGTGTATCAGCCAAAACCATGAAATGAGAGGTCGGCGGAGGGGCGACAGGCGCCGGTCTCGCATCCGAATCAACCTGATAGTTCAAAAGACCCCATTGCTCTAAAAACGAGTGCAGCCTGACTATCGAGCAAACGTCTCCGGCTAAATTCCGTCGACACGCCGTCGCCGACACATACTCGAACGGATTCAGCCGATAGGTGTCGATCATGAAGTTACGATACGCCACATAGACATCTGGAGTCTTGCTCTTGTTTTTTCCGCAGAAGAACTCGGGCATCGCGCGCTTCTCTATCTGGTGAATAGCGTTGTAGTCGAACCAGGCAGCGTAGGATGGAACGACGATGTAATGGGTCTGCTCGATGACATTGCCTTCGGATGGGGCTGGATTGTTGGCGGATTGAACGCCTTCCTCGTCGAGATCCGTTAGTTTTTGGCCTTTTGGCGCGGAGAATTCGGCGTCTTTTTCCTTTCCTGAAAGATAAATTGTTTGATTATTAGTGGGTAGTGATCTTCCACAGCTTCTAGTTATTGCTTGGCAGTAGCAAAACGCGACGTGGCATTTTTACATGGGTTAAGGCAGCCCTATGCANAGACGCTATCAAGCTGCGAAATCGGCTCTCTATCATTCGTGATAATGTACTTTTAATTCGCCTTTTCGACGACTATCTCTTACGCTTTGAGCTCCAATGGTTCCCATTCGAAGCAGGACAAATCCACGAGGAGGGAGATATCTATCTGAATCGAGTTCTTAGAGAAATGATCATCGGCTTTGAGTGCACCAAATTCGTTCGGCCCCAGTTCTTCTGTTCGATGCCTATAACTCATTTACCGGAAAGTCTNNNNNNNNNNTTGTATT</canonical>
            <polymorphic>CCATCGCTTGTTTTTGGTACTGATCAGTTTTGAGTCCTGGCTCGGAAATTGACTCAATCTCTGTCTTAATCTCCTCCTTAACAGCAGATTCTTCTTTAGCAGCGGCTGCGGCGTGTGGCGGATTCATTGGCTGAATTCCAGTTGGTGTATCAGCCAAAACCATGAAATGAGAGGTCGGCGGAGGGGCGACAGGCGCCGGTCTCGCATCCGAATCAACCTGATAGTTCAAAAGACCCCATTGCTCTAAAAACGAGTGCAGCCTGACTATCGAGCAAACGTCTCCGGCTAAATTCCGTCGACACGCCGTCGCCGACACATACTCGAACGGATTCAGCCGATAGGTGTCGATCATGAAGTTACGATACGCCACATAGACATCTGGAGTCTTGCTCTTGTTTTTTCCGCAGAAGAACTCGGGCATCGCGCGCTTCTCTATCTGGTGAATAGCGTTGTAGTCGAACCAGGCAGCGTAGGATGGAACGACGATGTAATGGGTCTGYTCGATGACATTGCCTTCGGATGGGGCTGGATTGTTGGCGGATTGAACGCCTTCCTCGTCGAGATCCGTTAGTTTTTGGCCTTTTGGCGCGGAGAATTCGGCGTCTTTTTCCTTTCCTGAAAGATAAATTGTTTGATTATTAGTGGGTAGTGATCTTCCACAGCTTCTAGTTATTGCTTGGCAGTAGCAAAACGCGACGTGGCATTTTTACATGGGTTAAGGCAGCCCTATGCANAGACGCTATCAAGCTGCGAAATCGGCTCTCTATCATTCGTGATAATGTACTTTTAATTCGCCTTTTCGACGACTATCTCTTACGCTTTGAGCTCCAATGGTTCCCATTCGAAGCAGGACAAATCCACGAGGAGGGAGATATCTATCTGAATCGAGTTCTTAGAGAAATGATCATCGGCTTTGAGTGCACCAAATTCGTTCGGCCCCAGTTCTTCTGTTCGATGCCTATAACTCATTTACCGGAAAGTCTNNNNNNNNNNTTGTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTCTCTATCTGGTGAATAGC</pcr_primer_p1>
		<pcr_primer_p2>CAATAACTAGAAGCTGTGGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTTCTCTATCTGGTGAATAGCGTTGTAGTCGAACCAGGCAGCGTAGGATGGAACGACGATGTAATGGGTCTGCTCGATGACATTGCCTTCGGATGGGGCTGGATTGTTGGCGGATTGAACGCCTTCCTCGTCGAGATCCGTTAGTTTTTGGCCTTTTGGCGCGGAGAATTCGGCGTCTTTTTCCTTTCCTGAAAGATAAATTGTTTGATTATTAGTGGGTAGTGATCTTCCACAGCTTCTAGTTATTG</canonical_amplicon>
		<polymorphic_amplicon>GCTTCTCTATCTGGTGAATAGCGTTGTAGTCGAACCAGGCAGCGTAGGATGGAACGACGATGTAATGGGTCTGYTCGATGACATTGCCTTCGGATGGGGCTGGATTGTTGGCGGATTGAACGCCTTCCTCGTCGAGATCCGTTAGTTTTTGGCCTTTTGGCGCGGAGAATTCGGCGTCTTTTTCCTTTCCTGAAAGATAAATTGTTTGATTATTAGTGGGTAGTGATCTTCCACAGCTTCTAGTTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32076</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>170420</contig_pos>
        <strand>+</strand>
        <context>CGGATTGAAC[G/T]CCTTCCTCGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGCTCGATGACATTGCCTTCGGATGGGGCTGGATTGTTGGCGGATTGAAC</left_flank>
        <right_flank>CCTTCCTCGTCGAGATCCGTTAGTTTTTGGCCTTTTGGCGCGGAGAATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGACTCAATCTCTGTCTTAATCTCCTCCTTAACAGCAGATTCTTCTTTAGCAGCGGCTGCGGCGTGTGGCGGATTCATTGGCTGAATTCCAGTTGGTGTATCAGCCAAAACCATGAAATGAGAGGTCGGCGGAGGGGCGACAGGCGCCGGTCTCGCATCCGAATCAACCTGATAGTTCAAAAGACCCCATTGCTCTAAAAACGAGTGCAGCCTGACTATCGAGCAAACGTCTCCGGCTAAATTCCGTCGACACGCCGTCGCCGACACATACTCGAACGGATTCAGCCGATAGGTGTCGATCATGAAGTTACGATACGCCACATAGACATCTGGAGTCTTGCTCTTGTTTTTTCCGCAGAAGAACTCGGGCATCGCGCGCTTCTCTATCTGGTGAATAGCGTTGTAGTCGAACCAGGCAGCGTAGGATGGAACGACGATGTAATGGGTCTGCTCGATGACATTGCCTTCGGATGGGGCTGGATTGTTGGCGGATTGAACGCCTTCCTCGTCGAGATCCGTTAGTTTTTGGCCTTTTGGCGCGGAGAATTCGGCGTCTTTTTCCTTTCCTGAAAGATAAATTGTTTGATTATTAGTGGGTAGTGATCTTCCACAGCTTCTAGTTATTGCTTGGCAGTAGCAAAACGCGACGTGGCATTTTTACATGGGTTAAGGCAGCCCTATGCANAGACGCTATCAAGCTGCGAAATCGGCTCTCTATCATTCGTGATAATGTACTTTTAATTCGCCTTTTCGACGACTATCTCTTACGCTTTGAGCTCCAATGGTTCCCATTCGAAGCAGGACAAATCCACGAGGAGGGAGATATCTATCTGAATCGAGTTCTTAGAGAAATGATCATCGGCTTTGAGTGCACCAAATTCGTTCGGCCCCAGTTCTTCTGTTCGATGCCTATAACTCATTTACCGGAAAGTCTNNNNNNNNNNTTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATATTTGCTACAGGGCC</canonical>
            <polymorphic>TTGACTCAATCTCTGTCTTAATCTCCTCCTTAACAGCAGATTCTTCTTTAGCAGCGGCTGCGGCGTGTGGCGGATTCATTGGCTGAATTCCAGTTGGTGTATCAGCCAAAACCATGAAATGAGAGGTCGGCGGAGGGGCGACAGGCGCCGGTCTCGCATCCGAATCAACCTGATAGTTCAAAAGACCCCATTGCTCTAAAAACGAGTGCAGCCTGACTATCGAGCAAACGTCTCCGGCTAAATTCCGTCGACACGCCGTCGCCGACACATACTCGAACGGATTCAGCCGATAGGTGTCGATCATGAAGTTACGATACGCCACATAGACATCTGGAGTCTTGCTCTTGTTTTTTCCGCAGAAGAACTCGGGCATCGCGCGCTTCTCTATCTGGTGAATAGCGTTGTAGTCGAACCAGGCAGCGTAGGATGGAACGACGATGTAATGGGTCTGCTCGATGACATTGCCTTCGGATGGGGCTGGATTGTTGGCGGATTGAACKCCTTCCTCGTCGAGATCCGTTAGTTTTTGGCCTTTTGGCGCGGAGAATTCGGCGTCTTTTTCCTTTCCTGAAAGATAAATTGTTTGATTATTAGTGGGTAGTGATCTTCCACAGCTTCTAGTTATTGCTTGGCAGTAGCAAAACGCGACGTGGCATTTTTACATGGGTTAAGGCAGCCCTATGCANAGACGCTATCAAGCTGCGAAATCGGCTCTCTATCATTCGTGATAATGTACTTTTAATTCGCCTTTTCGACGACTATCTCTTACGCTTTGAGCTCCAATGGTTCCCATTCGAAGCAGGACAAATCCACGAGGAGGGAGATATCTATCTGAATCGAGTTCTTAGAGAAATGATCATCGGCTTTGAGTGCACCAAATTCGTTCGGCCCCAGTTCTTCTGTTCGATGCCTATAACTCATTTACCGGAAAGTCTNNNNNNNNNNTTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATATTTGCTACAGGGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTCTCTATCTGGTGAATAGC</pcr_primer_p1>
		<pcr_primer_p2>CAATAACTAGAAGCTGTGGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTTCTCTATCTGGTGAATAGCGTTGTAGTCGAACCAGGCAGCGTAGGATGGAACGACGATGTAATGGGTCTGCTCGATGACATTGCCTTCGGATGGGGCTGGATTGTTGGCGGATTGAACGCCTTCCTCGTCGAGATCCGTTAGTTTTTGGCCTTTTGGCGCGGAGAATTCGGCGTCTTTTTCCTTTCCTGAAAGATAAATTGTTTGATTATTAGTGGGTAGTGATCTTCCACAGCTTCTAGTTATTG</canonical_amplicon>
		<polymorphic_amplicon>GCTTCTCTATCTGGTGAATAGCGTTGTAGTCGAACCAGGCAGCGTAGGATGGAACGACGATGTAATGGGTCTGCTCGATGACATTGCCTTCGGATGGGGCTGGATTGTTGGCGGATTGAACKCCTTCCTCGTCGAGATCCGTTAGTTTTTGGCCTTTTGGCGCGGAGAATTCGGCGTCTTTTTCCTTTCCTGAAAGATAAATTGTTTGATTATTAGTGGGTAGTGATCTTCCACAGCTTCTAGTTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32077</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>170431</contig_pos>
        <strand>+</strand>
        <context>CCTTCCTCGT[C/G]GAGATCCGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTGCCTTCGGATGGGGCTGGATTGTTGGCGGATTGAACGCCTTCCTCGT</left_flank>
        <right_flank>GAGATCCGTTAGTTTTTGGCCTTTTGGCGCGGAGAATTCGGCGTCTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGTCTTAATCTCCTCCTTAACAGCAGATTCTTCTTTAGCAGCGGCTGCGGCGTGTGGCGGATTCATTGGCTGAATTCCAGTTGGTGTATCAGCCAAAACCATGAAATGAGAGGTCGGCGGAGGGGCGACAGGCGCCGGTCTCGCATCCGAATCAACCTGATAGTTCAAAAGACCCCATTGCTCTAAAAACGAGTGCAGCCTGACTATCGAGCAAACGTCTCCGGCTAAATTCCGTCGACACGCCGTCGCCGACACATACTCGAACGGATTCAGCCGATAGGTGTCGATCATGAAGTTACGATACGCCACATAGACATCTGGAGTCTTGCTCTTGTTTTTTCCGCAGAAGAACTCGGGCATCGCGCGCTTCTCTATCTGGTGAATAGCGTTGTAGTCGAACCAGGCAGCGTAGGATGGAACGACGATGTAATGGGTCTGCTCGATGACATTGCCTTCGGATGGGGCTGGATTGTTGGCGGATTGAACGCCTTCCTCGTCGAGATCCGTTAGTTTTTGGCCTTTTGGCGCGGAGAATTCGGCGTCTTTTTCCTTTCCTGAAAGATAAATTGTTTGATTATTAGTGGGTAGTGATCTTCCACAGCTTCTAGTTATTGCTTGGCAGTAGCAAAACGCGACGTGGCATTTTTACATGGGTTAAGGCAGCCCTATGCANAGACGCTATCAAGCTGCGAAATCGGCTCTCTATCATTCGTGATAATGTACTTTTAATTCGCCTTTTCGACGACTATCTCTTACGCTTTGAGCTCCAATGGTTCCCATTCGAAGCAGGACAAATCCACGAGGAGGGAGATATCTATCTGAATCGAGTTCTTAGAGAAATGATCATCGGCTTTGAGTGCACCAAATTCGTTCGGCCCCAGTTCTTCTGTTCGATGCCTATAACTCATTTACCGGAAAGTCTNNNNNNNNNNTTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATATTTGCTACAGGGCCTTGAAATTTTA</canonical>
            <polymorphic>TCTGTCTTAATCTCCTCCTTAACAGCAGATTCTTCTTTAGCAGCGGCTGCGGCGTGTGGCGGATTCATTGGCTGAATTCCAGTTGGTGTATCAGCCAAAACCATGAAATGAGAGGTCGGCGGAGGGGCGACAGGCGCCGGTCTCGCATCCGAATCAACCTGATAGTTCAAAAGACCCCATTGCTCTAAAAACGAGTGCAGCCTGACTATCGAGCAAACGTCTCCGGCTAAATTCCGTCGACACGCCGTCGCCGACACATACTCGAACGGATTCAGCCGATAGGTGTCGATCATGAAGTTACGATACGCCACATAGACATCTGGAGTCTTGCTCTTGTTTTTTCCGCAGAAGAACTCGGGCATCGCGCGCTTCTCTATCTGGTGAATAGCGTTGTAGTCGAACCAGGCAGCGTAGGATGGAACGACGATGTAATGGGTCTGCTCGATGACATTGCCTTCGGATGGGGCTGGATTGTTGGCGGATTGAACGCCTTCCTCGTSGAGATCCGTTAGTTTTTGGCCTTTTGGCGCGGAGAATTCGGCGTCTTTTTCCTTTCCTGAAAGATAAATTGTTTGATTATTAGTGGGTAGTGATCTTCCACAGCTTCTAGTTATTGCTTGGCAGTAGCAAAACGCGACGTGGCATTTTTACATGGGTTAAGGCAGCCCTATGCANAGACGCTATCAAGCTGCGAAATCGGCTCTCTATCATTCGTGATAATGTACTTTTAATTCGCCTTTTCGACGACTATCTCTTACGCTTTGAGCTCCAATGGTTCCCATTCGAAGCAGGACAAATCCACGAGGAGGGAGATATCTATCTGAATCGAGTTCTTAGAGAAATGATCATCGGCTTTGAGTGCACCAAATTCGTTCGGCCCCAGTTCTTCTGTTCGATGCCTATAACTCATTTACCGGAAAGTCTNNNNNNNNNNTTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATATTTGCTACAGGGCCTTGAAATTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>242 210 111 106 67 57 45 43 42 28 25 24</canonical_bands>
                <polymorphic_bands>299 210 111 106 67 45 43 42 28 25 24</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>291 287 180 157 56 29</canonical_bands>
                <polymorphic_bands>291 287 236 157 29</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>254 239 176 138 107 75 11</canonical_bands>
                <polymorphic_bands>254 239 213 176 107 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTCTCTATCTGGTGAATAGC</pcr_primer_p1>
		<pcr_primer_p2>CAATAACTAGAAGCTGTGGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTTCTCTATCTGGTGAATAGCGTTGTAGTCGAACCAGGCAGCGTAGGATGGAACGACGATGTAATGGGTCTGCTCGATGACATTGCCTTCGGATGGGGCTGGATTGTTGGCGGATTGAACGCCTTCCTCGTCGAGATCCGTTAGTTTTTGGCCTTTTGGCGCGGAGAATTCGGCGTCTTTTTCCTTTCCTGAAAGATAAATTGTTTGATTATTAGTGGGTAGTGATCTTCCACAGCTTCTAGTTATTG</canonical_amplicon>
		<polymorphic_amplicon>GCTTCTCTATCTGGTGAATAGCGTTGTAGTCGAACCAGGCAGCGTAGGATGGAACGACGATGTAATGGGTCTGCTCGATGACATTGCCTTCGGATGGGGCTGGATTGTTGGCGGATTGAACGCCTTCCTCGTSGAGATCCGTTAGTTTTTGGCCTTTTGGCGCGGAGAATTCGGCGTCTTTTTCCTTTCCTGAAAGATAAATTGTTTGATTATTAGTGGGTAGTGATCTTCCACAGCTTCTAGTTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32078</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>175357</contig_pos>
        <strand></strand>
        <context>TCTGGAAAGC[G/T]TAGGCTTCTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGGTTCTGGAGACGATGGACTAGCGCTACCCGATTCCATTTCTGGAAAGC</left_flank>
        <right_flank>TAGGCTTCTATTGAAACTTGTGACCGATGTTAGAACTAGATAACTAAAGG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGATAGGTCATCGAGAAGAACGTTTAGCTGGCTTAGCGATTCGCTGGAAAGAAAAAAGAACATCGATATTATTAAACGAGAATCTGAATTTTTACTGTAAATATTTCGCCACTGAACTCCATGGTCCGGCTTCTGGAGTCACTAATTCCACGTTGGTTCCTCCTTTCTCCCCTTTTCTACTCGGCACGCCTTCATCGTCCAGCTCTTCTGTCTGATCAATCTTCGCATTCTCATACGGAGTACTCGATCCAACCAATTTCATCCATTCAACTCTTCTAGCCAATTTTCCGACTTGGTCTGTGAACGTCTCGGGTTTCAGATACTTTTCGACGCCGTCGAATCCGATTTCTTGGATTTTCCAGTCATCGTTGGCTTCTAGAACGAGATCTACGCCCTTCCGAGGCGCTAGTATGCTCGGTGGCTTTTCAGGTCCCTCATCTATGACTATAGGTTCTGGAGACGATGGACTAGCGCTACCCGATTCCATTTCTGGAAAGCGTAGGCTTCTATTGAAACTTGTGACCGATGTTAGAACTAGATAACTAAAGGATATAGACCCTAACCTAGAAAAAAAATAATCCGAGTTAAAAGTAGAGACTTTATAAGGGTTCACGAAGAAGGAAAGAGAAAAATGATGCACGGAACCGAGCTGAGTGCGCGCGCAATGATGAAGCGAGTGGCGACAACAACCCGCATCAAGGTATGTACAATGGAAAAATGAGACAACTGGGGTGGGAGACAATCAATGGGAAGAGGTAAAGAGCAACAGGGAGAAAAAGGAGGGGGATTCTAAACTGAGTATCTGTGAAAAAACAAAGTGGACATTAACGGGGACGGGGGCAACAGATCAACAAAGTATAAAAGTTTAGCAAGAAAAGAGAACAGAATTTAGTGCATGCTGTAGGTGTTGTCCTCCTCGAGCTCGCATACTTCTCCTTTGAAATCGAACTTGATGTTGATGTCAAGGTCGCGGTTGTTCTTCTGGTTTGGTGCCATTGA</canonical>
            <polymorphic>CGGATAGGTCATCGAGAAGAACGTTTAGCTGGCTTAGCGATTCGCTGGAAAGAAAAAAGAACATCGATATTATTAAACGAGAATCTGAATTTTTACTGTAAATATTTCGCCACTGAACTCCATGGTCCGGCTTCTGGAGTCACTAATTCCACGTTGGTTCCTCCTTTCTCCCCTTTTCTACTCGGCACGCCTTCATCGTCCAGCTCTTCTGTCTGATCAATCTTCGCATTCTCATACGGAGTACTCGATCCAACCAATTTCATCCATTCAACTCTTCTAGCCAATTTTCCGACTTGGTCTGTGAACGTCTCGGGTTTCAGATACTTTTCGACGCCGTCGAATCCGATTTCTTGGATTTTCCAGTCATCGTTGGCTTCTAGAACGAGATCTACGCCCTTCCGAGGCGCTAGTATGCTCGGTGGCTTTTCAGGTCCCTCATCTATGACTATAGGTTCTGGAGACGATGGACTAGCGCTACCCGATTCCATTTCTGGAAAGCKTAGGCTTCTATTGAAACTTGTGACCGATGTTAGAACTAGATAACTAAAGGATATAGACCCTAACCTAGAAAAAAAATAATCCGAGTTAAAAGTAGAGACTTTATAAGGGTTCACGAAGAAGGAAAGAGAAAAATGATGCACGGAACCGAGCTGAGTGCGCGCGCAATGATGAAGCGAGTGGCGACAACAACCCGCATCAAGGTATGTACAATGGAAAAATGAGACAACTGGGGTGGGAGACAATCAATGGGAAGAGGTAAAGAGCAACAGGGAGAAAAAGGAGGGGGATTCTAAACTGAGTATCTGTGAAAAAACAAAGTGGACATTAACGGGGACGGGGGCAACAGATCAACAAAGTATAAAAGTTTAGCAAGAAAAGAGAACAGAATTTAGTGCATGCTGTAGGTGTTGTCCTCCTCGAGCTCGCATACTTCTCCTTTGAAATCGAACTTGATGTTGATGTCAAGGTCGCGGTTGTTCTTCTGGTTTGGTGCCATTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTGGATTTTCCAGTCAT</pcr_primer_p1>
		<pcr_primer_p2>TCTACTTTTAACTCGGATTATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTGGATTTTCCAGTCATCGTTGGCTTCTAGAACGAGATCTACGCCCTTCCGAGGCGCTAGTATGCTCGGTGGCTTTTCAGGTCCCTCATCTATGACTATAGGTTCTGGAGACGATGGACTAGCGCTACCCGATTCCATTTCTGGAAAGCGTAGGCTTCTATTGAAACTTGTGACCGATGTTAGAACTAGATAACTAAAGGATATAGACCCTAACCTAGAAAAAAAATAATCCGAGTTAAAAGTAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTGGATTTTCCAGTCATCGTTGGCTTCTAGAACGAGATCTACGCCCTTCCGAGGCGCTAGTATGCTCGGTGGCTTTTCAGGTCCCTCATCTATGACTATAGGTTCTGGAGACGATGGACTAGCGCTACCCGATTCCATTTCTGGAAAGCKTAGGCTTCTATTGAAACTTGTGACCGATGTTAGAACTAGATAACTAAAGGATATAGACCCTAACCTAGAAAAAAAATAATCCGAGTTAAAAGTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32079</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>206783</contig_pos>
        <strand>+</strand>
        <context>TCCCCAACGA[A/T]TTCTCCAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTATCTTCTCGATCCTTCATGATAAGCTCCGCCTCCTCTTCCCCAACGA</left_flank>
        <right_flank>TTCTCCAATTTCCAAACTTCTCACAATTTGATTTCCCTCTGTTAGCTCTT</right_flank>
        <qual_score>130</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTGATTCTTTAGATCCCAATTTTATTTTAAACGTCTGAAATTCAAAAATACTGAAATTCGGAAAACAACTTACGCCTGCGTCCTTAACTGTCTCATTTCATGCTGAACATTTGCTAATTGTAGTGTCAGATGACGTGCTTCAGAAGTTGGCGACGTTGAACGGCTCACTGGAAAGATTTCAGAAAATTTTTTTTCAGAAATTATTTTTTTAAAGCTTACTCAGATAGCTGGAATCTTTCTGTTTTATGCAATGATCTCCATTTGAACTTGTAGTTGTGGTACTTTCCAAATCGTCAGAATCCTGGAAAAAAAATTTCGAAAAAAAAATTCAAAAAAAATTTTGAAATTTATTTACTGAATTTTTTTTAAAGGTTTTTTTAAGCGCATTTCCAAGAAATTCGATATTTTCAAACTTACCACATCCTCCACACTCCCACTGGGACCACCGTTATCTTCTCGATCCTTCATGATAAGCTCCGCCTCCTCTTCCCCAACGATTTCTCCAATTTCCAAACTTCTCACAATTTGATTTCCCTCTGTTAGCTCTTGTATATAACTGGCCAGACCAATTTGTATTTCCTGATCGAATCCAGTGATTCGCTCCACAAACACCTTCTTTTTATCGCTTTGAATTGCGCAGCCGAGAAGGAGAAGTAGAAGTTTTTTGAGCTCTTCTTGGAAGCTTTCTGGAAAAGATAGGGTTTTTTTGAAAGAAACAAATGGAAAGATCAGAAAAATTAAATTAGAAAAATTAGAAATTCGCGGGAAATCGAAAGAATTGTTTTTCAAAAAGAAAAGGAATATTTAAATGAGTCTAAAACTAATAGAAGTCAAGTATGAGCTCAATTATTTCGGCTGTTTTGCAAGATATCAAAATTAAGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGGAACCTAGATAAATCGGCTAGTTCCGAATGTTCAAAATTCATGTA</canonical>
            <polymorphic>TATTGATTCTTTAGATCCCAATTTTATTTTAAACGTCTGAAATTCAAAAATACTGAAATTCGGAAAACAACTTACGCCTGCGTCCTTAACTGTCTCATTTCATGCTGAACATTTGCTAATTGTAGTGTCAGATGACGTGCTTCAGAAGTTGGCGACGTTGAACGGCTCACTGGAAAGATTTCAGAAAATTTTTTTTCAGAAATTATTTTTTTAAAGCTTACTCAGATAGCTGGAATCTTTCTGTTTTATGCAATGATCTCCATTTGAACTTGTAGTTGTGGTACTTTCCAAATCGTCAGAATCCTGGAAAAAAAATTTCGAAAAAAAAATTCAAAAAAAATTTTGAAATTTATTTACTGAATTTTTTTTAAAGGTTTTTTTAAGCGCATTTCCAAGAAATTCGATATTTTCAAACTTACCACATCCTCCACACTCCCACTGGGACCACCGTTATCTTCTCGATCCTTCATGATAAGCTCCGCCTCCTCTTCCCCAACGAWTTCTCCAATTTCCAAACTTCTCACAATTTGATTTCCCTCTGTTAGCTCTTGTATATAACTGGCCAGACCAATTTGTATTTCCTGATCGAATCCAGTGATTCGCTCCACAAACACCTTCTTTTTATCGCTTTGAATTGCGCAGCCGAGAAGGAGAAGTAGAAGTTTTTTGAGCTCTTCTTGGAAGCTTTCTGGAAAAGATAGGGTTTTTTTGAAAGAAACAAATGGAAAGATCAGAAAAATTAAATTAGAAAAATTAGAAATTCGCGGGAAATCGAAAGAATTGTTTTTCAAAAAGAAAAGGAATATTTAAATGAGTCTAAAACTAATAGAAGTCAAGTATGAGCTCAATTATTTCGGCTGTTTTGCAAGATATCAAAATTAAGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGGAACCTAGATAAATCGGCTAGTTCCGAATGTTCAAAATTCATGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGAAATTCGATATTTTCAAAC</pcr_primer_p1>
		<pcr_primer_p2>AATTCAAAGCGATAAAAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAAGAAATTCGATATTTTCAAACTTACCACATCCTCCACACTCCCACTGGGACCACCGTTATCTTCTCGATCCTTCATGATAAGCTCCGCCTCCTCTTCCCCAACGATTTCTCCAATTTCCAAACTTCTCACAATTTGATTTCCCTCTGTTAGCTCTTGTATATAACTGGCCAGACCAATTTGTATTTCCTGATCGAATCCAGTGATTCGCTCCACAAACACCTTCTTTTTATCGCTTTGAATT</canonical_amplicon>
		<polymorphic_amplicon>CAAGAAATTCGATATTTTCAAACTTACCACATCCTCCACACTCCCACTGGGACCACCGTTATCTTCTCGATCCTTCATGATAAGCTCCGCCTCCTCTTCCCCAACGAWTTCTCCAATTTCCAAACTTCTCACAATTTGATTTCCCTCTGTTAGCTCTTGTATATAACTGGCCAGACCAATTTGTATTTCCTGATCGAATCCAGTGATTCGCTCCACAAACACCTTCTTTTTATCGCTTTGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32080</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>206987</contig_pos>
        <strand>+</strand>
        <context>AAAGATAGGG[A/G]TTTTTTGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTAGAAGTTTTTTGAGCTCTTCTTGGAAGCTTTCTGGAAAAGATAGGG</left_flank>
        <right_flank>TTTTTTGAAAGAAACAAATGGAAAGATCAGAAAAATTAAATTAGAAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTTAAAGCTTACTCAGATAGCTGGAATCTTTCTGTTTTATGCAATGATCTCCATTTGAACTTGTAGTTGTGGTACTTTCCAAATCGTCAGAATCCTGGAAAAAAAATTTCGAAAAAAAAATTCAAAAAAAATTTTGAAATTTATTTACTGAATTTTTTTTAAAGGTTTTTTTAAGCGCATTTCCAAGAAATTCGATATTTTCAAACTTACCACATCCTCCACACTCCCACTGGGACCACCGTTATCTTCTCGATCCTTCATGATAAGCTCCGCCTCCTCTTCCCCAACGATTTCTCCAATTTCCAAACTTCTCACAATTTGATTTCCCTCTGTTAGCTCTTGTATATAACTGGCCAGACCAATTTGTATTTCCTGATCGAATCCAGTGATTCGCTCCACAAACACCTTCTTTTTATCGCTTTGAATTGCGCAGCCGAGAAGGAGAAGTAGAAGTTTTTTGAGCTCTTCTTGGAAGCTTTCTGGAAAAGATAGGGTTTTTTTGAAAGAAACAAATGGAAAGATCAGAAAAATTAAATTAGAAAAATTAGAAATTCGCGGGAAATCGAAAGAATTGTTTTTCAAAAAGAAAAGGAATATTTAAATGAGTCTAAAACTAATAGAAGTCAAGTATGAGCTCAATTATTTCGGCTGTTTTGCAAGATATCAAAATTAAGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGGAACCTAGATAAATCGGCTAGTTCCGAATGTTCAAAATTCATGTACCAAGAACACAAAAGCGGACAAAAAGACAGATGTTTGGAATTATGGAACCGCGAGATTCGAAATATATGGAACAGATGTTGAAAATTCTGAAAAAAAAAGACCTAAACATGTTATTCTTAAAAATCTAGATACATTCAATTTTTTGGAACTTTTTGCTACTAAATTTTCAATAAATTTTATATAGATCGATCCATTTTAGAACA</canonical>
            <polymorphic>ATTTTTTTAAAGCTTACTCAGATAGCTGGAATCTTTCTGTTTTATGCAATGATCTCCATTTGAACTTGTAGTTGTGGTACTTTCCAAATCGTCAGAATCCTGGAAAAAAAATTTCGAAAAAAAAATTCAAAAAAAATTTTGAAATTTATTTACTGAATTTTTTTTAAAGGTTTTTTTAAGCGCATTTCCAAGAAATTCGATATTTTCAAACTTACCACATCCTCCACACTCCCACTGGGACCACCGTTATCTTCTCGATCCTTCATGATAAGCTCCGCCTCCTCTTCCCCAACGATTTCTCCAATTTCCAAACTTCTCACAATTTGATTTCCCTCTGTTAGCTCTTGTATATAACTGGCCAGACCAATTTGTATTTCCTGATCGAATCCAGTGATTCGCTCCACAAACACCTTCTTTTTATCGCTTTGAATTGCGCAGCCGAGAAGGAGAAGTAGAAGTTTTTTGAGCTCTTCTTGGAAGCTTTCTGGAAAAGATAGGGRTTTTTTGAAAGAAACAAATGGAAAGATCAGAAAAATTAAATTAGAAAAATTAGAAATTCGCGGGAAATCGAAAGAATTGTTTTTCAAAAAGAAAAGGAATATTTAAATGAGTCTAAAACTAATAGAAGTCAAGTATGAGCTCAATTATTTCGGCTGTTTTGCAAGATATCAAAATTAAGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGGAACCTAGATAAATCGGCTAGTTCCGAATGTTCAAAATTCATGTACCAAGAACACAAAAGCGGACAAAAAGACAGATGTTTGGAATTATGGAACCGCGAGATTCGAAATATATGGAACAGATGTTGAAAATTCTGAAAAAAAAAGACCTAAACATGTTATTCTTAAAAATCTAGATACATTCAATTTTTTGGAACTTTTTGCTACTAAATTTTCAATAAATTTTATATAGATCGATCCATTTTAGAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAATTTGATTTCCCTCTGTTA</pcr_primer_p1>
		<pcr_primer_p2>CGCGAATTTCTAATTTTTCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACAATTTGATTTCCCTCTGTTAGCTCTTGTATATAACTGGCCAGACCAATTTGTATTTCCTGATCGAATCCAGTGATTCGCTCCACAAACACCTTCTTTTTATCGCTTTGAATTGCGCAGCCGAGAAGGAGAAGTAGAAGTTTTTTGAGCTCTTCTTGGAAGCTTTCTGGAAAAGATAGGGTTTTTTTGAAAGAAACAAATGGAAAGATCAGAAAAATTAAATTAGAAAAATTAGAAATTCGCG</canonical_amplicon>
		<polymorphic_amplicon>ACAATTTGATTTCCCTCTGTTAGCTCTTGTATATAACTGGCCAGACCAATTTGTATTTCCTGATCGAATCCAGTGATTCGCTCCACAAACACCTTCTTTTTATCGCTTTGAATTGCGCAGCCGAGAAGGAGAAGTAGAAGTTTTTTGAGCTCTTCTTGGAAGCTTTCTGGAAAAGATAGGGRTTTTTTGAAAGAAACAAATGGAAAGATCAGAAAAATTAAATTAGAAAAATTAGAAATTCGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32081</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>207122</contig_pos>
        <strand></strand>
        <context>GAAgtcaagt[A/T]yragctcaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAAAAGAAAAGGAATATTTAAATGAGTCTAAAACTAATAGAAGTCAAGT</left_flank>
        <right_flank>TGAGCTCAATTATTTCGGCTGTTTTGCAAGATATCAAAATTAAGTCAACT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTGAAATTTATTTACTGAATTTTTTTTAAAGGTTTTTTTAAGCGCATTTCCAAGAAATTCGATATTTTCAAACTTACCACATCCTCCACACTCCCACTGGGACCACCGTTATCTTCTCGATCCTTCATGATAAGCTCCGCCTCCTCTTCCCCAACGATTTCTCCAATTTCCAAACTTCTCACAATTTGATTTCCCTCTGTTAGCTCTTGTATATAACTGGCCAGACCAATTTGTATTTCCTGATCGAATCCAGTGATTCGCTCCACAAACACCTTCTTTTTATCGCTTTGAATTGCGCAGCCGAGAAGGAGAAGTAGAAGTTTTTTGAGCTCTTCTTGGAAGCTTTCTGGAAAAGATAGGGTTTTTTTGAAAGAAACAAATGGAAAGATCAGAAAAATTAAATTAGAAAAATTAGAAATTCGCGGGAAATCGAAAGAATTGTTTTTCAAAAAGAAAAGGAATATTTAAATGAGTCTAAAACTAATAGAAGTCAAGTATGAGCTCAATTATTTCGGCTGTTTTGCAAGATATCAAAATTAAGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGGAACCTAGATAAATCGGCTAGTTCCGAATGTTCAAAATTCATGTACCAAGAACACAAAAGCGGACAAAAAGACAGATGTTTGGAATTATGGAACCGCGAGATTCGAAATATATGGAACAGATGTTGAAAATTCTGAAAAAAAAAGACCTAAACATGTTATTCTTAAAAATCTAGATACATTCAATTTTTTGGAACTTTTTGCTACTAAATTTTCAATAAATTTTATATAGATCGATCCATTTTAGAACAAGGAGTCTAACTGTATAATTTTCATCGAATTTGGACAAAAACTAAAAAAAAATACAACAAAATTTCTCCGTTTTTGGTACTGCCCAGCAGTAGTGATTTTGAATTTTGGTACTGCTTCGCAGTAGCAAAAACCAA</canonical>
            <polymorphic>ATTTTGAAATTTATTTACTGAATTTTTTTTAAAGGTTTTTTTAAGCGCATTTCCAAGAAATTCGATATTTTCAAACTTACCACATCCTCCACACTCCCACTGGGACCACCGTTATCTTCTCGATCCTTCATGATAAGCTCCGCCTCCTCTTCCCCAACGATTTCTCCAATTTCCAAACTTCTCACAATTTGATTTCCCTCTGTTAGCTCTTGTATATAACTGGCCAGACCAATTTGTATTTCCTGATCGAATCCAGTGATTCGCTCCACAAACACCTTCTTTTTATCGCTTTGAATTGCGCAGCCGAGAAGGAGAAGTAGAAGTTTTTTGAGCTCTTCTTGGAAGCTTTCTGGAAAAGATAGGGTTTTTTTGAAAGAAACAAATGGAAAGATCAGAAAAATTAAATTAGAAAAATTAGAAATTCGCGGGAAATCGAAAGAATTGTTTTTCAAAAAGAAAAGGAATATTTAAATGAGTCTAAAACTAATAGAAGTCAAGTWTGAGCTCAATTATTTCGGCTGTTTTGCAAGATATCAAAATTAAGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGGAACCTAGATAAATCGGCTAGTTCCGAATGTTCAAAATTCATGTACCAAGAACACAAAAGCGGACAAAAAGACAGATGTTTGGAATTATGGAACCGCGAGATTCGAAATATATGGAACAGATGTTGAAAATTCTGAAAAAAAAAGACCTAAACATGTTATTCTTAAAAATCTAGATACATTCAATTTTTTGGAACTTTTTGCTACTAAATTTTCAATAAATTTTATATAGATCGATCCATTTTAGAACAAGGAGTCTAACTGTATAATTTTCATCGAATTTGGACAAAAACTAAAAAAAAATACAACAAAATTTCTCCGTTTTTGGTACTGCCCAGCAGTAGTGATTTTGAATTTTGGTACTGCTTCGCAGTAGCAAAAACCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCGAAAGAATTGTTTTTCA</pcr_primer_p1>
		<pcr_primer_p2>TTGTGTTCTTGGTACATGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAATCGAAAGAATTGTTTTTCAAAAAGAAAAGGAATATTTAAATGAGTCTAAAACTAATAGAAGTCAAGTATGAGCTCAATTATTTCGGCTGTTTTGCAAGATATCAAAATTAAGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGGAACCTAGATAAATCGGCTAGTTCCGAATGTTCAAAATTCATGTACCAAGAACACAA</canonical_amplicon>
		<polymorphic_amplicon>AAATCGAAAGAATTGTTTTTCAAAAAGAAAAGGAATATTTAAATGAGTCTAAAACTAATAGAAGTCAAGTWTGAGCTCAATTATTTCGGCTGTTTTGCAAGATATCAAAATTAAGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGGAACCTAGATAAATCGGCTAGTTCCGAATGTTCAAAATTCATGTACCAAGAACACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32082</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>207123</contig_pos>
        <strand></strand>
        <context>AAgtcaagtw[T/C]ragctcaatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAAAGAAAAGGAATATTTAAATGAGTCTAAAACTAATAGAAGTCAAGTA</left_flank>
        <right_flank>GAGCTCAATTATTTCGGCTGTTTTGCAAGATATCAAAATTAAGTCAACTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGAAATTTATTTACTGAATTTTTTTTAAAGGTTTTTTTAAGCGCATTTCCAAGAAATTCGATATTTTCAAACTTACCACATCCTCCACACTCCCACTGGGACCACCGTTATCTTCTCGATCCTTCATGATAAGCTCCGCCTCCTCTTCCCCAACGATTTCTCCAATTTCCAAACTTCTCACAATTTGATTTCCCTCTGTTAGCTCTTGTATATAACTGGCCAGACCAATTTGTATTTCCTGATCGAATCCAGTGATTCGCTCCACAAACACCTTCTTTTTATCGCTTTGAATTGCGCAGCCGAGAAGGAGAAGTAGAAGTTTTTTGAGCTCTTCTTGGAAGCTTTCTGGAAAAGATAGGGTTTTTTTGAAAGAAACAAATGGAAAGATCAGAAAAATTAAATTAGAAAAATTAGAAATTCGCGGGAAATCGAAAGAATTGTTTTTCAAAAAGAAAAGGAATATTTAAATGAGTCTAAAACTAATAGAAGTCAAGTATGAGCTCAATTATTTCGGCTGTTTTGCAAGATATCAAAATTAAGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGGAACCTAGATAAATCGGCTAGTTCCGAATGTTCAAAATTCATGTACCAAGAACACAAAAGCGGACAAAAAGACAGATGTTTGGAATTATGGAACCGCGAGATTCGAAATATATGGAACAGATGTTGAAAATTCTGAAAAAAAAAGACCTAAACATGTTATTCTTAAAAATCTAGATACATTCAATTTTTTGGAACTTTTTGCTACTAAATTTTCAATAAATTTTATATAGATCGATCCATTTTAGAACAAGGAGTCTAACTGTATAATTTTCATCGAATTTGGACAAAAACTAAAAAAAAATACAACAAAATTTCTCCGTTTTTGGTACTGCCCAGCAGTAGTGATTTTGAATTTTGGTACTGCTTCGCAGTAGCAAAAACCAAG</canonical>
            <polymorphic>TTTTGAAATTTATTTACTGAATTTTTTTTAAAGGTTTTTTTAAGCGCATTTCCAAGAAATTCGATATTTTCAAACTTACCACATCCTCCACACTCCCACTGGGACCACCGTTATCTTCTCGATCCTTCATGATAAGCTCCGCCTCCTCTTCCCCAACGATTTCTCCAATTTCCAAACTTCTCACAATTTGATTTCCCTCTGTTAGCTCTTGTATATAACTGGCCAGACCAATTTGTATTTCCTGATCGAATCCAGTGATTCGCTCCACAAACACCTTCTTTTTATCGCTTTGAATTGCGCAGCCGAGAAGGAGAAGTAGAAGTTTTTTGAGCTCTTCTTGGAAGCTTTCTGGAAAAGATAGGGTTTTTTTGAAAGAAACAAATGGAAAGATCAGAAAAATTAAATTAGAAAAATTAGAAATTCGCGGGAAATCGAAAGAATTGTTTTTCAAAAAGAAAAGGAATATTTAAATGAGTCTAAAACTAATAGAAGTCAAGTAYGAGCTCAATTATTTCGGCTGTTTTGCAAGATATCAAAATTAAGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGGAACCTAGATAAATCGGCTAGTTCCGAATGTTCAAAATTCATGTACCAAGAACACAAAAGCGGACAAAAAGACAGATGTTTGGAATTATGGAACCGCGAGATTCGAAATATATGGAACAGATGTTGAAAATTCTGAAAAAAAAAGACCTAAACATGTTATTCTTAAAAATCTAGATACATTCAATTTTTTGGAACTTTTTGCTACTAAATTTTCAATAAATTTTATATAGATCGATCCATTTTAGAACAAGGAGTCTAACTGTATAATTTTCATCGAATTTGGACAAAAACTAAAAAAAAATACAACAAAATTTCTCCGTTTTTGGTACTGCCCAGCAGTAGTGATTTTGAATTTTGGTACTGCTTCGCAGTAGCAAAAACCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCGAAAGAATTGTTTTTCA</pcr_primer_p1>
		<pcr_primer_p2>TTGTGTTCTTGGTACATGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAATCGAAAGAATTGTTTTTCAAAAAGAAAAGGAATATTTAAATGAGTCTAAAACTAATAGAAGTCAAGTATGAGCTCAATTATTTCGGCTGTTTTGCAAGATATCAAAATTAAGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGGAACCTAGATAAATCGGCTAGTTCCGAATGTTCAAAATTCATGTACCAAGAACACAA</canonical_amplicon>
		<polymorphic_amplicon>AAATCGAAAGAATTGTTTTTCAAAAAGAAAAGGAATATTTAAATGAGTCTAAAACTAATAGAAGTCAAGTAYGAGCTCAATTATTTCGGCTGTTTTGCAAGATATCAAAATTAAGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGGAACCTAGATAAATCGGCTAGTTCCGAATGTTCAAAATTCATGTACCAAGAACACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32083</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>207124</contig_pos>
        <strand></strand>
        <context>Agtcaagtwy[G/A]agctcaatta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAAGAAAAGGAATATTTAAATGAGTCTAAAACTAATAGAAGTCAAGTAT</left_flank>
        <right_flank>AGCTCAATTATTTCGGCTGTTTTGCAAGATATCAAAATTAAGTCAACTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAAATTTATTTACTGAATTTTTTTTAAAGGTTTTTTTAAGCGCATTTCCAAGAAATTCGATATTTTCAAACTTACCACATCCTCCACACTCCCACTGGGACCACCGTTATCTTCTCGATCCTTCATGATAAGCTCCGCCTCCTCTTCCCCAACGATTTCTCCAATTTCCAAACTTCTCACAATTTGATTTCCCTCTGTTAGCTCTTGTATATAACTGGCCAGACCAATTTGTATTTCCTGATCGAATCCAGTGATTCGCTCCACAAACACCTTCTTTTTATCGCTTTGAATTGCGCAGCCGAGAAGGAGAAGTAGAAGTTTTTTGAGCTCTTCTTGGAAGCTTTCTGGAAAAGATAGGGTTTTTTTGAAAGAAACAAATGGAAAGATCAGAAAAATTAAATTAGAAAAATTAGAAATTCGCGGGAAATCGAAAGAATTGTTTTTCAAAAAGAAAAGGAATATTTAAATGAGTCTAAAACTAATAGAAGTCAAGTATGAGCTCAATTATTTCGGCTGTTTTGCAAGATATCAAAATTAAGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGGAACCTAGATAAATCGGCTAGTTCCGAATGTTCAAAATTCATGTACCAAGAACACAAAAGCGGACAAAAAGACAGATGTTTGGAATTATGGAACCGCGAGATTCGAAATATATGGAACAGATGTTGAAAATTCTGAAAAAAAAAGACCTAAACATGTTATTCTTAAAAATCTAGATACATTCAATTTTTTGGAACTTTTTGCTACTAAATTTTCAATAAATTTTATATAGATCGATCCATTTTAGAACAAGGAGTCTAACTGTATAATTTTCATCGAATTTGGACAAAAACTAAAAAAAAATACAACAAAATTTCTCCGTTTTTGGTACTGCCCAGCAGTAGTGATTTTGAATTTTGGTACTGCTTCGCAGTAGCAAAAACCAAGT</canonical>
            <polymorphic>TTTGAAATTTATTTACTGAATTTTTTTTAAAGGTTTTTTTAAGCGCATTTCCAAGAAATTCGATATTTTCAAACTTACCACATCCTCCACACTCCCACTGGGACCACCGTTATCTTCTCGATCCTTCATGATAAGCTCCGCCTCCTCTTCCCCAACGATTTCTCCAATTTCCAAACTTCTCACAATTTGATTTCCCTCTGTTAGCTCTTGTATATAACTGGCCAGACCAATTTGTATTTCCTGATCGAATCCAGTGATTCGCTCCACAAACACCTTCTTTTTATCGCTTTGAATTGCGCAGCCGAGAAGGAGAAGTAGAAGTTTTTTGAGCTCTTCTTGGAAGCTTTCTGGAAAAGATAGGGTTTTTTTGAAAGAAACAAATGGAAAGATCAGAAAAATTAAATTAGAAAAATTAGAAATTCGCGGGAAATCGAAAGAATTGTTTTTCAAAAAGAAAAGGAATATTTAAATGAGTCTAAAACTAATAGAAGTCAAGTATRAGCTCAATTATTTCGGCTGTTTTGCAAGATATCAAAATTAAGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGGAACCTAGATAAATCGGCTAGTTCCGAATGTTCAAAATTCATGTACCAAGAACACAAAAGCGGACAAAAAGACAGATGTTTGGAATTATGGAACCGCGAGATTCGAAATATATGGAACAGATGTTGAAAATTCTGAAAAAAAAAGACCTAAACATGTTATTCTTAAAAATCTAGATACATTCAATTTTTTGGAACTTTTTGCTACTAAATTTTCAATAAATTTTATATAGATCGATCCATTTTAGAACAAGGAGTCTAACTGTATAATTTTCATCGAATTTGGACAAAAACTAAAAAAAAATACAACAAAATTTCTCCGTTTTTGGTACTGCCCAGCAGTAGTGATTTTGAATTTTGGTACTGCTTCGCAGTAGCAAAAACCAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>496 332 172</canonical_bands>
                <polymorphic_bands>668 332</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>496 332 172</canonical_bands>
                <polymorphic_bands>668 332</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>496 332 172</canonical_bands>
                <polymorphic_bands>668 332</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>498 330 172</canonical_bands>
                <polymorphic_bands>670 330</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCGAAAGAATTGTTTTTCA</pcr_primer_p1>
		<pcr_primer_p2>TTGTGTTCTTGGTACATGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAATCGAAAGAATTGTTTTTCAAAAAGAAAAGGAATATTTAAATGAGTCTAAAACTAATAGAAGTCAAGTATGAGCTCAATTATTTCGGCTGTTTTGCAAGATATCAAAATTAAGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGGAACCTAGATAAATCGGCTAGTTCCGAATGTTCAAAATTCATGTACCAAGAACACAA</canonical_amplicon>
		<polymorphic_amplicon>AAATCGAAAGAATTGTTTTTCAAAAAGAAAAGGAATATTTAAATGAGTCTAAAACTAATAGAAGTCAAGTATRAGCTCAATTATTTCGGCTGTTTTGCAAGATATCAAAATTAAGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGGAACCTAGATAAATCGGCTAGTTCCGAATGTTCAAAATTCATGTACCAAGAACACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32084</snp_id>
        <super_contig>c006800848.Contig4</super_contig>
        <contig_pos>207196</contig_pos>
        <strand></strand>
        <context>tgatattatg[A/G]taaacaattt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGCAAGATATCAAAATTAAGTCAACTGATAAAATATTGGTGATATTATG</left_flank>
        <right_flank>TAAACAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGGAACCTAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTACCACATCCTCCACACTCCCACTGGGACCACCGTTATCTTCTCGATCCTTCATGATAAGCTCCGCCTCCTCTTCCCCAACGATTTCTCCAATTTCCAAACTTCTCACAATTTGATTTCCCTCTGTTAGCTCTTGTATATAACTGGCCAGACCAATTTGTATTTCCTGATCGAATCCAGTGATTCGCTCCACAAACACCTTCTTTTTATCGCTTTGAATTGCGCAGCCGAGAAGGAGAAGTAGAAGTTTTTTGAGCTCTTCTTGGAAGCTTTCTGGAAAAGATAGGGTTTTTTTGAAAGAAACAAATGGAAAGATCAGAAAAATTAAATTAGAAAAATTAGAAATTCGCGGGAAATCGAAAGAATTGTTTTTCAAAAAGAAAAGGAATATTTAAATGAGTCTAAAACTAATAGAAGTCAAGTATGAGCTCAATTATTTCGGCTGTTTTGCAAGATATCAAAATTAAGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGGAACCTAGATAAATCGGCTAGTTCCGAATGTTCAAAATTCATGTACCAAGAACACAAAAGCGGACAAAAAGACAGATGTTTGGAATTATGGAACCGCGAGATTCGAAATATATGGAACAGATGTTGAAAATTCTGAAAAAAAAAGACCTAAACATGTTATTCTTAAAAATCTAGATACATTCAATTTTTTGGAACTTTTTGCTACTAAATTTTCAATAAATTTTATATAGATCGATCCATTTTAGAACAAGGAGTCTAACTGTATAATTTTCATCGAATTTGGACAAAAACTAAAAAAAAATACAACAAAATTTCTCCGTTTTTGGTACTGCCCAGCAGTAGTGATTTTGAATTTTGGTACTGCTTCGCAGTAGCAAAAACCAAGTGTGCATCTGCTAGATAGTTCCACGTGGCATATCTTTCTTGGGAGCAAGTTTACAAAAAAGTTGTCAGCTACA</canonical>
            <polymorphic>ACTTACCACATCCTCCACACTCCCACTGGGACCACCGTTATCTTCTCGATCCTTCATGATAAGCTCCGCCTCCTCTTCCCCAACGATTTCTCCAATTTCCAAACTTCTCACAATTTGATTTCCCTCTGTTAGCTCTTGTATATAACTGGCCAGACCAATTTGTATTTCCTGATCGAATCCAGTGATTCGCTCCACAAACACCTTCTTTTTATCGCTTTGAATTGCGCAGCCGAGAAGGAGAAGTAGAAGTTTTTTGAGCTCTTCTTGGAAGCTTTCTGGAAAAGATAGGGTTTTTTTGAAAGAAACAAATGGAAAGATCAGAAAAATTAAATTAGAAAAATTAGAAATTCGCGGGAAATCGAAAGAATTGTTTTTCAAAAAGAAAAGGAATATTTAAATGAGTCTAAAACTAATAGAAGTCAAGTATGAGCTCAATTATTTCGGCTGTTTTGCAAGATATCAAAATTAAGTCAACTGATAAAATATTGGTGATATTATGRTAAACAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGGAACCTAGATAAATCGGCTAGTTCCGAATGTTCAAAATTCATGTACCAAGAACACAAAAGCGGACAAAAAGACAGATGTTTGGAATTATGGAACCGCGAGATTCGAAATATATGGAACAGATGTTGAAAATTCTGAAAAAAAAAGACCTAAACATGTTATTCTTAAAAATCTAGATACATTCAATTTTTTGGAACTTTTTGCTACTAAATTTTCAATAAATTTTATATAGATCGATCCATTTTAGAACAAGGAGTCTAACTGTATAATTTTCATCGAATTTGGACAAAAACTAAAAAAAAATACAACAAAATTTCTCCGTTTTTGGTACTGCCCAGCAGTAGTGATTTTGAATTTTGGTACTGCTTCGCAGTAGCAAAAACCAAGTGTGCATCTGCTAGATAGTTCCACGTGGCATATCTTTCTTGGGAGCAAGTTTACAAAAAAGTTGTCAGCTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCGAAAGAATTGTTTTTCA</pcr_primer_p1>
		<pcr_primer_p2>TTGTGTTCTTGGTACATGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAATCGAAAGAATTGTTTTTCAAAAAGAAAAGGAATATTTAAATGAGTCTAAAACTAATAGAAGTCAAGTATGAGCTCAATTATTTCGGCTGTTTTGCAAGATATCAAAATTAAGTCAACTGATAAAATATTGGTGATATTATGATAAACAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGGAACCTAGATAAATCGGCTAGTTCCGAATGTTCAAAATTCATGTACCAAGAACACAA</canonical_amplicon>
		<polymorphic_amplicon>AAATCGAAAGAATTGTTTTTCAAAAAGAAAAGGAATATTTAAATGAGTCTAAAACTAATAGAAGTCAAGTATGAGCTCAATTATTTCGGCTGTTTTGCAAGATATCAAAATTAAGTCAACTGATAAAATATTGGTGATATTATGRTAAACAATTTATCAGTTGACAACTTTTTCATATCTTTAACAGGAACCTAGATAAATCGGCTAGTTCCGAATGTTCAAAATTCATGTACCAAGAACACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32085</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>2185</contig_pos>
        <strand></strand>
        <context>GTATTTAGTG[G/A]TCACGGGGCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAAATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTG</left_flank>
        <right_flank>TCACGGGGCTTGAGGCTATTTTTAAAAAAATTGAAATTTTGAAAAGAGGT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGACCAACACGCTTATGACGACCATTCGAGGTTTGTTAGCGTTTTGGACTTATGTGGGAGTCATTGAGCCAAGCAGTGACCGATCGCCAACCGAAGAATCAAGATCTATTTGGAGGGTTGTCAGGTAGTATTTGTAGCTTCAAGCTTTTTGTTTAAATTCTGATGATGATCTCAGAAGCGTTGTAAAGGTGACGGAAAAAATGAAAGGCGGTCGTTTGGATATATCGAAAAGCTCACTCAGTTTTTCGGACACGATTCGACTAATGAAAAAAAATGTTATAGTTGAGTACATACATTCCAAACTAACTTCAATTCGCTCTTTCGCACTGTCAGCTCGATTTCTTCCCCAGATTCGGCCAGTTCACCGTAGTCGCAAAAATATTGTTCTGCGCGTGTCGTGCCAACTAAGCACGATAGCATGGCGCTGTCGCGCCTCCATTAAAACTTTTAAATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTGGTCACGGGGCTTGAGGCTATTTTTAAAAAAATTGAAATTTTGAAAAGAGGTGAATCTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAA</canonical>
            <polymorphic>GAGACCAACACGCTTATGACGACCATTCGAGGTTTGTTAGCGTTTTGGACTTATGTGGGAGTCATTGAGCCAAGCAGTGACCGATCGCCAACCGAAGAATCAAGATCTATTTGGAGGGTTGTCAGGTAGTATTTGTAGCTTCAAGCTTTTTGTTTAAATTCTGATGATGATCTCAGAAGCGTTGTAAAGGTGACGGAAAAAATGAAAGGCGGTCGTTTGGATATATCGAAAAGCTCACTCAGTTTTTCGGACACGATTCGACTAATGAAAAAAAATGTTATAGTTGAGTACATACATTCCAAACTAACTTCAATTCGCTCTTTCGCACTGTCAGCTCGATTTCTTCCCCAGATTCGGCCAGTTCACCGTAGTCGCAAAAATATTGTTCTGCGCGTGTCGTGCCAACTAAGCACGATAGCATGGCGCTGTCGCGCCTCCATTAAAACTTTTAAATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTGRTCACGGGGCTTGAGGCTATTTTTAAAAAAATTGAAATTTTGAAAAGAGGTGAATCTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 310 113 76</canonical_bands>
                <polymorphic_bands>811 113 76</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>501 310 113 76</canonical_bands>
                <polymorphic_bands>811 113 76</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACTTTTAAATACATTTCCATCA</pcr_primer_p1>
		<pcr_primer_p2>AAAACACTCCACATCCTAAATC</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>AAAACTTTTAAATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTGGTCACGGGGCTTGAGGCTATTTTTAAAAAAATTGAAATTTTGAAAAGAGGTGAATCTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAACTTTTAAATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTGRTCACGGGGCTTGAGGCTATTTTTAAAAAAATTGAAATTTTGAAAAGAGGTGAATCTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32086</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>2207</contig_pos>
        <strand></strand>
        <context>GAGGCTATTT[T/C]TAAAAAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTAAACAAAACGCAATCGTATTTAGTGGTCACGGGGCTTGAGGCTATTT</left_flank>
        <right_flank>TAAAAAAATTGAAATTTTGAAAAGAGGTGAATCTTGAAAAAATTTGGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCATTCGAGGTTTGTTAGCGTTTTGGACTTATGTGGGAGTCATTGAGCCAAGCAGTGACCGATCGCCAACCGAAGAATCAAGATCTATTTGGAGGGTTGTCAGGTAGTATTTGTAGCTTCAAGCTTTTTGTTTAAATTCTGATGATGATCTCAGAAGCGTTGTAAAGGTGACGGAAAAAATGAAAGGCGGTCGTTTGGATATATCGAAAAGCTCACTCAGTTTTTCGGACACGATTCGACTAATGAAAAAAAATGTTATAGTTGAGTACATACATTCCAAACTAACTTCAATTCGCTCTTTCGCACTGTCAGCTCGATTTCTTCCCCAGATTCGGCCAGTTCACCGTAGTCGCAAAAATATTGTTCTGCGCGTGTCGTGCCAACTAAGCACGATAGCATGGCGCTGTCGCGCCTCCATTAAAACTTTTAAATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTGGTCACGGGGCTTGAGGCTATTTTTAAAAAAATTGAAATTTTGAAAAGAGGTGAATCTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAG</canonical>
            <polymorphic>CCATTCGAGGTTTGTTAGCGTTTTGGACTTATGTGGGAGTCATTGAGCCAAGCAGTGACCGATCGCCAACCGAAGAATCAAGATCTATTTGGAGGGTTGTCAGGTAGTATTTGTAGCTTCAAGCTTTTTGTTTAAATTCTGATGATGATCTCAGAAGCGTTGTAAAGGTGACGGAAAAAATGAAAGGCGGTCGTTTGGATATATCGAAAAGCTCACTCAGTTTTTCGGACACGATTCGACTAATGAAAAAAAATGTTATAGTTGAGTACATACATTCCAAACTAACTTCAATTCGCTCTTTCGCACTGTCAGCTCGATTTCTTCCCCAGATTCGGCCAGTTCACCGTAGTCGCAAAAATATTGTTCTGCGCGTGTCGTGCCAACTAAGCACGATAGCATGGCGCTGTCGCGCCTCCATTAAAACTTTTAAATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTGGTCACGGGGCTTGAGGCTATTTYTAAAAAAATTGAAATTTTGAAAAGAGGTGAATCTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 295 133 49 24</canonical_bands>
                <polymorphic_bands>548 295 133 24</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>286 227 150 132 109 49 24 14 9</canonical_bands>
                <polymorphic_bands>286 276 150 132 109 24 14 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACTTTTAAATACATTTCCATCA</pcr_primer_p1>
		<pcr_primer_p2>AAAACACTCCACATCCTAAATC</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>AAAACTTTTAAATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTGGTCACGGGGCTTGAGGCTATTTTTAAAAAAATTGAAATTTTGAAAAGAGGTGAATCTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAACTTTTAAATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTGGTCACGGGGCTTGAGGCTATTTYTAAAAAAATTGAAATTTTGAAAAGAGGTGAATCTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32087</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>2239</contig_pos>
        <strand></strand>
        <context>AAGAGGTGAA[T/G]CTTGAAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CGGGGCTTGAGGCTATTTTTAAAAAAATTGAAATTTTGAAAAGAGGTGAA</left_flank>
        <right_flank>CTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGGGAGTCATTGAGCCAAGCAGTGACCGATCGCCAACCGAAGAATCAAGATCTATTTGGAGGGTTGTCAGGTAGTATTTGTAGCTTCAAGCTTTTTGTTTAAATTCTGATGATGATCTCAGAAGCGTTGTAAAGGTGACGGAAAAAATGAAAGGCGGTCGTTTGGATATATCGAAAAGCTCACTCAGTTTTTCGGACACGATTCGACTAATGAAAAAAAATGTTATAGTTGAGTACATACATTCCAAACTAACTTCAATTCGCTCTTTCGCACTGTCAGCTCGATTTCTTCCCCAGATTCGGCCAGTTCACCGTAGTCGCAAAAATATTGTTCTGCGCGTGTCGTGCCAACTAAGCACGATAGCATGGCGCTGTCGCGCCTCCATTAAAACTTTTAAATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTGGTCACGGGGCTTGAGGCTATTTTTAAAAAAATTGAAATTTTGAAAAGAGGTGAATCTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAG</canonical>
            <polymorphic>GTGGGAGTCATTGAGCCAAGCAGTGACCGATCGCCAACCGAAGAATCAAGATCTATTTGGAGGGTTGTCAGGTAGTATTTGTAGCTTCAAGCTTTTTGTTTAAATTCTGATGATGATCTCAGAAGCGTTGTAAAGGTGACGGAAAAAATGAAAGGCGGTCGTTTGGATATATCGAAAAGCTCACTCAGTTTTTCGGACACGATTCGACTAATGAAAAAAAATGTTATAGTTGAGTACATACATTCCAAACTAACTTCAATTCGCTCTTTCGCACTGTCAGCTCGATTTCTTCCCCAGATTCGGCCAGTTCACCGTAGTCGCAAAAATATTGTTCTGCGCGTGTCGTGCCAACTAAGCACGATAGCATGGCGCTGTCGCGCCTCCATTAAAACTTTTAAATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTGGTCACGGGGCTTGAGGCTATTTTTAAAAAAATTGAAATTTTGAAAAGAGGTGAAKCTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>357 200 158 146 96 38 5</canonical_bands>
                <polymorphic_bands>557 158 146 96 38 5</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>454 357 142 47</canonical_bands>
                <polymorphic_bands>811 142 47</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 200 158 96 43</canonical_bands>
                <polymorphic_bands>703 158 96 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACTTTTAAATACATTTCCATCA</pcr_primer_p1>
		<pcr_primer_p2>AAAACACTCCACATCCTAAATC</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>AAAACTTTTAAATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTGGTCACGGGGCTTGAGGCTATTTTTAAAAAAATTGAAATTTTGAAAAGAGGTGAATCTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAACTTTTAAATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTGGTCACGGGGCTTGAGGCTATTTTTAAAAAAATTGAAATTTTGAAAAGAGGTGAAKCTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32088</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>2318</contig_pos>
        <strand></strand>
        <context>GGAAAAGCTC[G/A]ACGAAGGAAK</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTC</left_flank>
        <right_flank>ACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTAGCTTCAAGCTTTTTGTTTAAATTCTGATGATGATCTCAGAAGCGTTGTAAAGGTGACGGAAAAAATGAAAGGCGGTCGTTTGGATATATCGAAAAGCTCACTCAGTTTTTCGGACACGATTCGACTAATGAAAAAAAATGTTATAGTTGAGTACATACATTCCAAACTAACTTCAATTCGCTCTTTCGCACTGTCAGCTCGATTTCTTCCCCAGATTCGGCCAGTTCACCGTAGTCGCAAAAATATTGTTCTGCGCGTGTCGTGCCAACTAAGCACGATAGCATGGCGCTGTCGCGCCTCCATTAAAACTTTTAAATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTGGTCACGGGGCTTGAGGCTATTTTTAAAAAAATTGAAATTTTGAAAAGAGGTGAATCTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAGAAGCTAAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGT</canonical>
            <polymorphic>TGTAGCTTCAAGCTTTTTGTTTAAATTCTGATGATGATCTCAGAAGCGTTGTAAAGGTGACGGAAAAAATGAAAGGCGGTCGTTTGGATATATCGAAAAGCTCACTCAGTTTTTCGGACACGATTCGACTAATGAAAAAAAATGTTATAGTTGAGTACATACATTCCAAACTAACTTCAATTCGCTCTTTCGCACTGTCAGCTCGATTTCTTCCCCAGATTCGGCCAGTTCACCGTAGTCGCAAAAATATTGTTCTGCGCGTGTCGTGCCAACTAAGCACGATAGCATGGCGCTGTCGCGCCTCCATTAAAACTTTTAAATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTGGTCACGGGGCTTGAGGCTATTTTTAAAAAAATTGAAATTTTGAAAAGAGGTGAATCTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCRACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAGAAGCTAAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>295 234 165 102 94 78 32</canonical_bands>
                <polymorphic_bands>397 234 165 94 78 32</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTGGAAACTAGAAGAAGCTC</pcr_primer_p1>
		<pcr_primer_p2>CTGATTTAGGATGGTATGGTTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAG</canonical_amplicon>
		<polymorphic_amplicon>AATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCRACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32089</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>2328</contig_pos>
        <strand></strand>
        <context>RACGAAGGAA[G/T]KGGCCGGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAA</left_flank>
        <right_flank>GGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTTTTTGTTTAAATTCTGATGATGATCTCAGAAGCGTTGTAAAGGTGACGGAAAAAATGAAAGGCGGTCGTTTGGATATATCGAAAAGCTCACTCAGTTTTTCGGACACGATTCGACTAATGAAAAAAAATGTTATAGTTGAGTACATACATTCCAAACTAACTTCAATTCGCTCTTTCGCACTGTCAGCTCGATTTCTTCCCCAGATTCGGCCAGTTCACCGTAGTCGCAAAAATATTGTTCTGCGCGTGTCGTGCCAACTAAGCACGATAGCATGGCGCTGTCGCGCCTCCATTAAAACTTTTAAATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTGGTCACGGGGCTTGAGGCTATTTTTAAAAAAATTGAAATTTTGAAAAGAGGTGAATCTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAGAAGCTAAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGTTAGGAGAAAC</canonical>
            <polymorphic>AGCTTTTTGTTTAAATTCTGATGATGATCTCAGAAGCGTTGTAAAGGTGACGGAAAAAATGAAAGGCGGTCGTTTGGATATATCGAAAAGCTCACTCAGTTTTTCGGACACGATTCGACTAATGAAAAAAAATGTTATAGTTGAGTACATACATTCCAAACTAACTTCAATTCGCTCTTTCGCACTGTCAGCTCGATTTCTTCCCCAGATTCGGCCAGTTCACCGTAGTCGCAAAAATATTGTTCTGCGCGTGTCGTGCCAACTAAGCACGATAGCATGGCGCTGTCGCGCCTCCATTAAAACTTTTAAATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTGGTCACGGGGCTTGAGGCTATTTTTAAAAAAATTGAAATTTTGAAAAGAGGTGAATCTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAKGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAGAAGCTAAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGTTAGGAGAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTGGAAACTAGAAGAAGCTC</pcr_primer_p1>
		<pcr_primer_p2>CTGATTTAGGATGGTATGGTTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAG</canonical_amplicon>
		<polymorphic_amplicon>AATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAKGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32090</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>2329</contig_pos>
        <strand></strand>
        <context>ACGAAGGAAK[G/T]GGCCGGATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAG</left_flank>
        <right_flank>GGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTTTTTGTTTAAATTCTGATGATGATCTCAGAAGCGTTGTAAAGGTGACGGAAAAAATGAAAGGCGGTCGTTTGGATATATCGAAAAGCTCACTCAGTTTTTCGGACACGATTCGACTAATGAAAAAAAATGTTATAGTTGAGTACATACATTCCAAACTAACTTCAATTCGCTCTTTCGCACTGTCAGCTCGATTTCTTCCCCAGATTCGGCCAGTTCACCGTAGTCGCAAAAATATTGTTCTGCGCGTGTCGTGCCAACTAAGCACGATAGCATGGCGCTGTCGCGCCTCCATTAAAACTTTTAAATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTGGTCACGGGGCTTGAGGCTATTTTTAAAAAAATTGAAATTTTGAAAAGAGGTGAATCTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAGAAGCTAAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGTTAGGAGAAACG</canonical>
            <polymorphic>GCTTTTTGTTTAAATTCTGATGATGATCTCAGAAGCGTTGTAAAGGTGACGGAAAAAATGAAAGGCGGTCGTTTGGATATATCGAAAAGCTCACTCAGTTTTTCGGACACGATTCGACTAATGAAAAAAAATGTTATAGTTGAGTACATACATTCCAAACTAACTTCAATTCGCTCTTTCGCACTGTCAGCTCGATTTCTTCCCCAGATTCGGCCAGTTCACCGTAGTCGCAAAAATATTGTTCTGCGCGTGTCGTGCCAACTAAGCACGATAGCATGGCGCTGTCGCGCCTCCATTAAAACTTTTAAATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTGGTCACGGGGCTTGAGGCTATTTTTAAAAAAATTGAAATTTTGAAAAGAGGTGAATCTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGKGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAGAAGCTAAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGTTAGGAGAAACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTGGAAACTAGAAGAAGCTC</pcr_primer_p1>
		<pcr_primer_p2>CTGATTTAGGATGGTATGGTTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAG</canonical_amplicon>
		<polymorphic_amplicon>AATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGKGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32091</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>2398</contig_pos>
        <strand></strand>
        <context>AATTTCATAA[C/T]TTTCATTTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAA</left_flank>
        <right_flank>TTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTTTGGATATATCGAAAAGCTCACTCAGTTTTTCGGACACGATTCGACTAATGAAAAAAAATGTTATAGTTGAGTACATACATTCCAAACTAACTTCAATTCGCTCTTTCGCACTGTCAGCTCGATTTCTTCCCCAGATTCGGCCAGTTCACCGTAGTCGCAAAAATATTGTTCTGCGCGTGTCGTGCCAACTAAGCACGATAGCATGGCGCTGTCGCGCCTCCATTAAAACTTTTAAATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTGGTCACGGGGCTTGAGGCTATTTTTAAAAAAATTGAAATTTTGAAAAGAGGTGAATCTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAGAAGCTAAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGTTAGGAGAAACGTGCAAAAATCCTAAAAATACTTAAAAACACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAA</canonical>
            <polymorphic>CGTTTGGATATATCGAAAAGCTCACTCAGTTTTTCGGACACGATTCGACTAATGAAAAAAAATGTTATAGTTGAGTACATACATTCCAAACTAACTTCAATTCGCTCTTTCGCACTGTCAGCTCGATTTCTTCCCCAGATTCGGCCAGTTCACCGTAGTCGCAAAAATATTGTTCTGCGCGTGTCGTGCCAACTAAGCACGATAGCATGGCGCTGTCGCGCCTCCATTAAAACTTTTAAATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTGGTCACGGGGCTTGAGGCTATTTTTAAAAAAATTGAAATTTTGAAAAGAGGTGAATCTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAAYTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAGAAGCTAAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGTTAGGAGAAACGTGCAAAAATCCTAAAAATACTTAAAAACACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTGGAAACTAGAAGAAGCTC</pcr_primer_p1>
		<pcr_primer_p2>CTGATTTAGGATGGTATGGTTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAG</canonical_amplicon>
		<polymorphic_amplicon>AATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAAYTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32092</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>2467</contig_pos>
        <strand></strand>
        <context>TACGCCGGCT[A/G]TTTAGGACTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCT</left_flank>
        <right_flank>TTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGAGTACATACATTCCAAACTAACTTCAATTCGCTCTTTCGCACTGTCAGCTCGATTTCTTCCCCAGATTCGGCCAGTTCACCGTAGTCGCAAAAATATTGTTCTGCGCGTGTCGTGCCAACTAAGCACGATAGCATGGCGCTGTCGCGCCTCCATTAAAACTTTTAAATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTGGTCACGGGGCTTGAGGCTATTTTTAAAAAAATTGAAATTTTGAAAAGAGGTGAATCTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAGAAGCTAAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGTTAGGAGAAACGTGCAAAAATCCTAAAAATACTTAAAAACACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGAAAAAAAAATTAGTGCCACAGGCGGGTTTGAACTCGGGTTCCTCGGACCGAAGGCGAAATTTTGGAC</canonical>
            <polymorphic>GTTGAGTACATACATTCCAAACTAACTTCAATTCGCTCTTTCGCACTGTCAGCTCGATTTCTTCCCCAGATTCGGCCAGTTCACCGTAGTCGCAAAAATATTGTTCTGCGCGTGTCGTGCCAACTAAGCACGATAGCATGGCGCTGTCGCGCCTCCATTAAAACTTTTAAATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTGGTCACGGGGCTTGAGGCTATTTTTAAAAAAATTGAAATTTTGAAAAGAGGTGAATCTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTRTTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAGAAGCTAAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGTTAGGAGAAACGTGCAAAAATCCTAAAAATACTTAAAAACACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGAAAAAAAAATTAGTGCCACAGGCGGGTTTGAACTCGGGTTCCTCGGACCGAAGGCGAAATTTTGGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTAGGATGTGGAGTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCAATTTTACTTTGACGAATG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTRTTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32093</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>2545</contig_pos>
        <strand></strand>
        <context>AAAAGAATTT[A/G]ATTTCGTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTT</left_flank>
        <right_flank>ATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCACCGTAGTCGCAAAAATATTGTTCTGCGCGTGTCGTGCCAACTAAGCACGATAGCATGGCGCTGTCGCGCCTCCATTAAAACTTTTAAATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTGGTCACGGGGCTTGAGGCTATTTTTAAAAAAATTGAAATTTTGAAAAGAGGTGAATCTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAGAAGCTAAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGTTAGGAGAAACGTGCAAAAATCCTAAAAATACTTAAAAACACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGAAAAAAAAATTAGTGCCACAGGCGGGTTTGAACTCGGGTTCCTCGGACCGAAGGCGAAATTTTGGACACACTTCCCAACATCCCCTATCCATGATGCAAAAGTTAAAACATGTTTATCTCTTTCCGCAACCGAGTTATTACACGT</canonical>
            <polymorphic>GTTCACCGTAGTCGCAAAAATATTGTTCTGCGCGTGTCGTGCCAACTAAGCACGATAGCATGGCGCTGTCGCGCCTCCATTAAAACTTTTAAATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTGGTCACGGGGCTTGAGGCTATTTTTAAAAAAATTGAAATTTTGAAAAGAGGTGAATCTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTRATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAGAAGCTAAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGTTAGGAGAAACGTGCAAAAATCCTAAAAATACTTAAAAACACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGAAAAAAAAATTAGTGCCACAGGCGGGTTTGAACTCGGGTTCCTCGGACCGAAGGCGAAATTTTGGACACACTTCCCAACATCCCCTATCCATGATGCAAAAGTTAAAACATGTTTATCTCTTTCCGCAACCGAGTTATTACACGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>227 150 143 109 80 51 49 42 38 24 17 17 17 17 10 9</canonical_bands>
                <polymorphic_bands>259 227 143 80 51 49 42 38 24 17 17 17 17 10 9</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>168 140 115 100 88 64 63 50 46 28 25 24 19 17 17 17 8 6 5</canonical_bands>
                <polymorphic_bands>168 140 115 100 88 64 63 50 46 29 28 25 19 17 17 17 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGACTAACCATACCATCCTAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCAACTTTAAGCCTCTTCTAACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGG</canonical_amplicon>
		<polymorphic_amplicon>GGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTRATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32094</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>2583</contig_pos>
        <strand></strand>
        <context>GAAAAAATGG[C/A]GCACTATGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGG</left_flank>
        <right_flank>GCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGCCAACTAAGCACGATAGCATGGCGCTGTCGCGCCTCCATTAAAACTTTTAAATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTGGTCACGGGGCTTGAGGCTATTTTTAAAAAAATTGAAATTTTGAAAAGAGGTGAATCTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAGAAGCTAAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGTTAGGAGAAACGTGCAAAAATCCTAAAAATACTTAAAAACACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGAAAAAAAAATTAGTGCCACAGGCGGGTTTGAACTCGGGTTCCTCGGACCGAAGGCGAAATTTTGGACACACTTCCCAACATCCCCTATCCATGATGCAAAAGTTAAAACATGTTTATCTCTTTCCGCAACCGAGTTATTACACGTCAAATAGTGGTGCGCGCTCTCTGTGGCCGCCACAGAGA</canonical>
            <polymorphic>GTGCCAACTAAGCACGATAGCATGGCGCTGTCGCGCCTCCATTAAAACTTTTAAATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTGGTCACGGGGCTTGAGGCTATTTTTAAAAAAATTGAAATTTTGAAAAGAGGTGAATCTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGMGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAGAAGCTAAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGTTAGGAGAAACGTGCAAAAATCCTAAAAATACTTAAAAACACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGAAAAAAAAATTAGTGCCACAGGCGGGTTTGAACTCGGGTTCCTCGGACCGAAGGCGAAATTTTGGACACACTTCCCAACATCCCCTATCCATGATGCAAAAGTTAAAACATGTTTATCTCTTTCCGCAACCGAGTTATTACACGTCAAATAGTGGTGCGCGCTCTCTGTGGCCGCCACAGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>475 466 27 22 8 2</canonical_bands>
                <polymorphic_bands>941 27 22 8 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGACTAACCATACCATCCTAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCAACTTTAAGCCTCTTCTAACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGG</canonical_amplicon>
		<polymorphic_amplicon>GGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGMGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32095</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>2595</contig_pos>
        <strand></strand>
        <context>CACTATGAGA[G/A]TCATGAAATA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGA</left_flank>
        <right_flank>TCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATC</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACGATAGCATGGCGCTGTCGCGCCTCCATTAAAACTTTTAAATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTGGTCACGGGGCTTGAGGCTATTTTTAAAAAAATTGAAATTTTGAAAAGAGGTGAATCTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAGAAGCTAAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGTTAGGAGAAACGTGCAAAAATCCTAAAAATACTTAAAAACACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGAAAAAAAAATTAGTGCCACAGGCGGGTTTGAACTCGGGTTCCTCGGACCGAAGGCGAAATTTTGGACACACTTCCCAACATCCCCTATCCATGATGCAAAAGTTAAAACATGTTTATCTCTTTCCGCAACCGAGTTATTACACGTCAAATAGTGGTGCGCGCTCTCTGTGGCCGCCACAGAGATCGCTACGCACT</canonical>
            <polymorphic>CACGATAGCATGGCGCTGTCGCGCCTCCATTAAAACTTTTAAATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTGGTCACGGGGCTTGAGGCTATTTTTAAAAAAATTGAAATTTTGAAAAGAGGTGAATCTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGARTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAGAAGCTAAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGTTAGGAGAAACGTGCAAAAATCCTAAAAATACTTAAAAACACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGAAAAAAAAATTAGTGCCACAGGCGGGTTTGAACTCGGGTTCCTCGGACCGAAGGCGAAATTTTGGACACACTTCCCAACATCCCCTATCCATGATGCAAAAGTTAAAACATGTTTATCTCTTTCCGCAACCGAGTTATTACACGTCAAATAGTGGTGCGCGCTCTCTGTGGCCGCCACAGAGATCGCTACGCACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGACTAACCATACCATCCTAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCAACTTTAAGCCTCTTCTAACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGG</canonical_amplicon>
		<polymorphic_amplicon>GGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGARTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32096</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>2608</contig_pos>
        <strand></strand>
        <context>ATGAAATAGG[T/A]TGTATCCAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGG</left_flank>
        <right_flank>TGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCTGTCGCGCCTCCATTAAAACTTTTAAATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTGGTCACGGGGCTTGAGGCTATTTTTAAAAAAATTGAAATTTTGAAAAGAGGTGAATCTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAGAAGCTAAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGTTAGGAGAAACGTGCAAAAATCCTAAAAATACTTAAAAACACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGAAAAAAAAATTAGTGCCACAGGCGGGTTTGAACTCGGGTTCCTCGGACCGAAGGCGAAATTTTGGACACACTTCCCAACATCCCCTATCCATGATGCAAAAGTTAAAACATGTTTATCTCTTTCCGCAACCGAGTTATTACACGTCAAATAGTGGTGCGCGCTCTCTGTGGCCGCCACAGAGATCGCTACGCACTGGAGGGCCTCAGT</canonical>
            <polymorphic>CGCTGTCGCGCCTCCATTAAAACTTTTAAATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTGGTCACGGGGCTTGAGGCTATTTTTAAAAAAATTGAAATTTTGAAAAGAGGTGAATCTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGWTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAGAAGCTAAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGTTAGGAGAAACGTGCAAAAATCCTAAAAATACTTAAAAACACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGAAAAAAAAATTAGTGCCACAGGCGGGTTTGAACTCGGGTTCCTCGGACCGAAGGCGAAATTTTGGACACACTTCCCAACATCCCCTATCCATGATGCAAAAGTTAAAACATGTTTATCTCTTTCCGCAACCGAGTTATTACACGTCAAATAGTGGTGCGCGCTCTCTGTGGCCGCCACAGAGATCGCTACGCACTGGAGGGCCTCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGACTAACCATACCATCCTAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCAACTTTAAGCCTCTTCTAACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGG</canonical_amplicon>
		<polymorphic_amplicon>GGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGWTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32097</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>2637</contig_pos>
        <strand></strand>
        <context>AAGGAGCAAA[C/G]ATCGTATCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAA</left_flank>
        <right_flank>ATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATT</right_flank>
        <qual_score>46</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTGGTCACGGGGCTTGAGGCTATTTTTAAAAAAATTGAAATTTTGAAAAGAGGTGAATCTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAGAAGCTAAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGTTAGGAGAAACGTGCAAAAATCCTAAAAATACTTAAAAACACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGAAAAAAAAATTAGTGCCACAGGCGGGTTTGAACTCGGGTTCCTCGGACCGAAGGCGAAATTTTGGACACACTTCCCAACATCCCCTATCCATGATGCAAAAGTTAAAACATGTTTATCTCTTTCCGCAACCGAGTTATTACACGTCAAATAGTGGTGCGCGCTCTCTGTGGCCGCCACAGAGATCGCTACGCACTGGAGGGCCTCAGTACATTTTCTTAAAACGACCGTAACTTGCT</canonical>
            <polymorphic>ATACATTTCCATCATATCATTTAAACAAAACGCAATCGTATTTAGTGGTCACGGGGCTTGAGGCTATTTTTAAAAAAATTGAAATTTTGAAAAGAGGTGAATCTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAASATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAGAAGCTAAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGTTAGGAGAAACGTGCAAAAATCCTAAAAATACTTAAAAACACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGAAAAAAAAATTAGTGCCACAGGCGGGTTTGAACTCGGGTTCCTCGGACCGAAGGCGAAATTTTGGACACACTTCCCAACATCCCCTATCCATGATGCAAAAGTTAAAACATGTTTATCTCTTTCCGCAACCGAGTTATTACACGTCAAATAGTGGTGCGCGCTCTCTGTGGCCGCCACAGAGATCGCTACGCACTGGAGGGCCTCAGTACATTTTCTTAAAACGACCGTAACTTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGACTAACCATACCATCCTAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCAACTTTAAGCCTCTTCTAACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGG</canonical_amplicon>
		<polymorphic_amplicon>GGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAASATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32098</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>2739</contig_pos>
        <strand></strand>
        <context>ACATTTAGGA[G/A]AAGCTWAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGA</left_flank>
        <right_flank>AAGCTAAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAGAAGCTAAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGTTAGGAGAAACGTGCAAAAATCCTAAAAATACTTAAAAACACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGAAAAAAAAATTAGTGCCACAGGCGGGTTTGAACTCGGGTTCCTCGGACCGAAGGCGAAATTTTGGACACACTTCCCAACATCCCCTATCCATGATGCAAAAGTTAAAACATGTTTATCTCTTTCCGCAACCGAGTTATTACACGTCAAATAGTGGTGCGCGCTCTCTGTGGCCGCCACAGAGATCGCTACGCACTGGAGGGCCTCAGTACATTTTCTTAAAACGACCGTAACTTGCTTCAAAATGGTCGTAAAGGGTCGGTAAAAAAACGAATCGATGCGTCTCGACGAGCTCTACAAAATGGCTTTTTAGCATAAAATTTATCTGTTAAACCGCGTTC</canonical>
            <polymorphic>CTTGAAAAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGARAAGCTAAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGTTAGGAGAAACGTGCAAAAATCCTAAAAATACTTAAAAACACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGAAAAAAAAATTAGTGCCACAGGCGGGTTTGAACTCGGGTTCCTCGGACCGAAGGCGAAATTTTGGACACACTTCCCAACATCCCCTATCCATGATGCAAAAGTTAAAACATGTTTATCTCTTTCCGCAACCGAGTTATTACACGTCAAATAGTGGTGCGCGCTCTCTGTGGCCGCCACAGAGATCGCTACGCACTGGAGGGCCTCAGTACATTTTCTTAAAACGACCGTAACTTGCTTCAAAATGGTCGTAAAGGGTCGGTAAAAAAACGAATCGATGCGTCTCGACGAGCTCTACAAAATGGCTTTTTAGCATAAAATTTATCTGTTAAACCGCGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCGTCAAAGTAAAATTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TCCTAAATTTAAGCTTCTCCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAGAAGCTAAAATTTAGGAGAAGCTTAAATTTAGGA</canonical_amplicon>
		<polymorphic_amplicon>ATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGARAAGCTAAAATTTAGGAGAAGCTTAAATTTAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32099</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>2745</contig_pos>
        <strand></strand>
        <context>AGGARAAGCT[A/T]AAATTTAGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAGAAGCT</left_flank>
        <right_flank>AAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAGAAGCTAAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGTTAGGAGAAACGTGCAAAAATCCTAAAAATACTTAAAAACACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGAAAAAAAAATTAGTGCCACAGGCGGGTTTGAACTCGGGTTCCTCGGACCGAAGGCGAAATTTTGGACACACTTCCCAACATCCCCTATCCATGATGCAAAAGTTAAAACATGTTTATCTCTTTCCGCAACCGAGTTATTACACGTCAAATAGTGGTGCGCGCTCTCTGTGGCCGCCACAGAGATCGCTACGCACTGGAGGGCCTCAGTACATTTTCTTAAAACGACCGTAACTTGCTTCAAAATGGTCGTAAAGGGTCGGTAAAAAAACGAATCGATGCGTCTCGACGAGCTCTACAAAATGGCTTTTTAGCATAAAATTTATCTGTTAAACCGCGTTCGCTAGG</canonical>
            <polymorphic>AAAATTTGGAAACTAGAAGAAGCTCATTTTCTTTGAAAAAAAACTTGCATGTCGTAAAAGTCGGAAAAGCTCGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAGAAGCTWAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGTTAGGAGAAACGTGCAAAAATCCTAAAAATACTTAAAAACACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGAAAAAAAAATTAGTGCCACAGGCGGGTTTGAACTCGGGTTCCTCGGACCGAAGGCGAAATTTTGGACACACTTCCCAACATCCCCTATCCATGATGCAAAAGTTAAAACATGTTTATCTCTTTCCGCAACCGAGTTATTACACGTCAAATAGTGGTGCGCGCTCTCTGTGGCCGCCACAGAGATCGCTACGCACTGGAGGGCCTCAGTACATTTTCTTAAAACGACCGTAACTTGCTTCAAAATGGTCGTAAAGGGTCGGTAAAAAAACGAATCGATGCGTCTCGACGAGCTCTACAAAATGGCTTTTTAGCATAAAATTTATCTGTTAAACCGCGTTCGCTAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCGTCAAAGTAAAATTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TCCTAAATTTAAGCTTCTCCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAGAAGCTAAAATTTAGGAGAAGCTTAAATTTAGGA</canonical_amplicon>
		<polymorphic_amplicon>ATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAGAAGCTWAAATTTAGGAGAAGCTTAAATTTAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32100</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>2827</contig_pos>
        <strand></strand>
        <context>GTTAGGAGAA[A/G]CGTSCAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGTTAGGAGAA</left_flank>
        <right_flank>CGTGCAAAAATCCTAAAAATACTTAAAAACACTTAATTTACACTCAGGGA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAGAAGCTAAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGTTAGGAGAAACGTGCAAAAATCCTAAAAATACTTAAAAACACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGAAAAAAAAATTAGTGCCACAGGCGGGTTTGAACTCGGGTTCCTCGGACCGAAGGCGAAATTTTGGACACACTTCCCAACATCCCCTATCCATGATGCAAAAGTTAAAACATGTTTATCTCTTTCCGCAACCGAGTTATTACACGTCAAATAGTGGTGCGCGCTCTCTGTGGCCGCCACAGAGATCGCTACGCACTGGAGGGCCTCAGTACATTTTCTTAAAACGACCGTAACTTGCTTCAAAATGGTCGTAAAGGGTCGGTAAAAAAACGAATCGATGCGTCTCGACGAGCTCTACAAAATGGCTTTTTAGCATAAAATTTATCTGTTAAACCGCGTTCGCTAGGTCCAACTTTAGAAAACGCAAAAATCGTTTTTTCGCCATAACTTTTTTTCCATCAAGACATGACCCCATTTTGACCGGGGGAA</canonical>
            <polymorphic>GGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAGAAGCTAAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGTTAGGAGAARCGTGCAAAAATCCTAAAAATACTTAAAAACACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGAAAAAAAAATTAGTGCCACAGGCGGGTTTGAACTCGGGTTCCTCGGACCGAAGGCGAAATTTTGGACACACTTCCCAACATCCCCTATCCATGATGCAAAAGTTAAAACATGTTTATCTCTTTCCGCAACCGAGTTATTACACGTCAAATAGTGGTGCGCGCTCTCTGTGGCCGCCACAGAGATCGCTACGCACTGGAGGGCCTCAGTACATTTTCTTAAAACGACCGTAACTTGCTTCAAAATGGTCGTAAAGGGTCGGTAAAAAAACGAATCGATGCGTCTCGACGAGCTCTACAAAATGGCTTTTTAGCATAAAATTTATCTGTTAAACCGCGTTCGCTAGGTCCAACTTTAGAAAACGCAAAAATCGTTTTTTCGCCATAACTTTTTTTCCATCAAGACATGACCCCATTTTGACCGGGGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>500 285 215</canonical_bands>
                <polymorphic_bands>715 285</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGAGAAGCTTAAATTTAGGAGA</pcr_primer_p1>
		<pcr_primer_p2>ACATGTTTTAACTTTTGCATCAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGTTAGGAGAAACGTGCAAAAATCCTAAAAATACTTAAAAACACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGAAAAAAAAATTAGTGCCACAGGCGGGTTTGAACTCGGGTTCCTCGGACCGAAGGCGAAATTTTGGACACACTTCCCAACATCCCCTATCCATGATGCAAAAGTTAAAACATGT</canonical_amplicon>
		<polymorphic_amplicon>AGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGTTAGGAGAARCGTGCAAAAATCCTAAAAATACTTAAAAACACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGAAAAAAAAATTAGTGCCACAGGCGGGTTTGAACTCGGGTTCCTCGGACCGAAGGCGAAATTTTGGACACACTTCCCAACATCCCCTATCCATGATGCAAAAGTTAAAACATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32101</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>2831</contig_pos>
        <strand></strand>
        <context>GGAGAARCGT[G/C]CAAAAATCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGTTAGGAGAAACGT</left_flank>
        <right_flank>CAAAAATCCTAAAAATACTTAAAAACACTTAATTTACACTCAGGGACCCC</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAGAAGCTAAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGTTAGGAGAAACGTGCAAAAATCCTAAAAATACTTAAAAACACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGAAAAAAAAATTAGTGCCACAGGCGGGTTTGAACTCGGGTTCCTCGGACCGAAGGCGAAATTTTGGACACACTTCCCAACATCCCCTATCCATGATGCAAAAGTTAAAACATGTTTATCTCTTTCCGCAACCGAGTTATTACACGTCAAATAGTGGTGCGCGCTCTCTGTGGCCGCCACAGAGATCGCTACGCACTGGAGGGCCTCAGTACATTTTCTTAAAACGACCGTAACTTGCTTCAAAATGGTCGTAAAGGGTCGGTAAAAAAACGAATCGATGCGTCTCGACGAGCTCTACAAAATGGCTTTTTAGCATAAAATTTATCTGTTAAACCGCGTTCGCTAGGTCCAACTTTAGAAAACGCAAAAATCGTTTTTTCGCCATAACTTTTTTTCCATCAAGACATGACCCCATTTTGACCGGGGGAATCGA</canonical>
            <polymorphic>CCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTACGCCGGCTATTTAGGACTAACCATACCATCCTAAATCAGTACTTTCGGTTCGTCAATGGACGAACCGAAGAATGAGAAAAGAATTTAATTTCGTTCATTCGTCAAAGTAAAATTGAAAAAATGGCGCACTATGAGAGTCATGAAATAGGTTGTATCCAAGAGAAAACAAAGGAGCAAACATCGTATCAAATGCTCGATAACTGATCTTATCAGTATCCGAAACCAAATTGAGACTTAAAGTTAGAAGAGGCTTAAAGTTGGGAGAAGCCTACATTTAGGAGAAGCTAAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGTTAGGAGAAACGTSCAAAAATCCTAAAAATACTTAAAAACACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGAAAAAAAAATTAGTGCCACAGGCGGGTTTGAACTCGGGTTCCTCGGACCGAAGGCGAAATTTTGGACACACTTCCCAACATCCCCTATCCATGATGCAAAAGTTAAAACATGTTTATCTCTTTCCGCAACCGAGTTATTACACGTCAAATAGTGGTGCGCGCTCTCTGTGGCCGCCACAGAGATCGCTACGCACTGGAGGGCCTCAGTACATTTTCTTAAAACGACCGTAACTTGCTTCAAAATGGTCGTAAAGGGTCGGTAAAAAAACGAATCGATGCGTCTCGACGAGCTCTACAAAATGGCTTTTTAGCATAAAATTTATCTGTTAAACCGCGTTCGCTAGGTCCAACTTTAGAAAACGCAAAAATCGTTTTTTCGCCATAACTTTTTTTCCATCAAGACATGACCCCATTTTGACCGGGGGAATCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 335 165</canonical_bands>
                <polymorphic_bands>665 335</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>245 238 234 72 50 46 27 16 16 13 12 11 7 5 3 3 2</canonical_bands>
                <polymorphic_bands>272 238 234 72 50 46 16 16 13 12 11 7 5 3 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGAGAAGCTTAAATTTAGGAGA</pcr_primer_p1>
		<pcr_primer_p2>ACATGTTTTAACTTTTGCATCAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGTTAGGAGAAACGTGCAAAAATCCTAAAAATACTTAAAAACACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGAAAAAAAAATTAGTGCCACAGGCGGGTTTGAACTCGGGTTCCTCGGACCGAAGGCGAAATTTTGGACACACTTCCCAACATCCCCTATCCATGATGCAAAAGTTAAAACATGT</canonical_amplicon>
		<polymorphic_amplicon>AGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAATTTAGGAGAAGCTTAAAGTTAGGAGAAACGTSCAAAAATCCTAAAAATACTTAAAAACACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGAAAAAAAAATTAGTGCCACAGGCGGGTTTGAACTCGGGTTCCTCGGACCGAAGGCGAAATTTTGGACACACTTCCCAACATCCCCTATCCATGATGCAAAAGTTAAAACATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32102</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>4476</contig_pos>
        <strand></strand>
        <context>TCAAAAATAA[T/C]ACTAGACTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTTGTATTGTTTATGATTTCTTTGTTCAACCTTCCGTAGATCAAAAATAA</left_flank>
        <right_flank>ACTAGACTTTTTTCTAATTAAATTTTCGGTAGATCAAAAATGTATTAGCA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGTGCCTCATCCTAAATGGCGCAGGCAAAGCCTGCGCCTGAGCCTAAGCCTAAGCAGCAACCCTAGAGATAAAAATTAACATTCTTTGAATGTTTCGAATGTTTGAATTTTTTGAATGTTCACCGAACTAACCTAAAAACTAACGTACGATAAACAAGAATACGAATGAAAATAACATCAGTTAGAGAAGAAAATTTTGTAACTAAACAAAACAAAAATTAGAATTCCCTTAAGGAAAATTGACTACAAAAATGTTGGAAGTATTAGAAATCGACATTAGTACTGGGAATTTAAAATTGTTGCTCCCCTTCTGATTACAGTTAACTTTTCATATTTAAACTGGTAATTTCGGGGAAAGGTCGATCTTAAGAACTTTTGTTGGGAAACCAACGAAAGATAGAGGAACCGGAAAAAAATCTATTGAAAGTTCCGAAAATCATTTTAAAAACTTGTATTGTTTATGATTTCTTTGTTCAACCTTCCGTAGATCAAAAATAATACTAGACTTTTTTCTAATTAAATTTTCGGTAGATCAAAAATGTATTAGCAAGACCAGAGATCATAAGTTAAAGTTGTTCAGAGATCGAATAATTATTTTCCAAGGTTAGTATAACTAACGTCTTCGGTAGATCAAAAAGTGTGTCAGCAAGTGTAGAGATGATAAATCTAATTTTTTTTAACTTGAAGAATAATTTTCTGAAATCTTGTAAGCTTAATCTTTGAACTAAATTAATGAAATCATAGTTAACTTTTTTCAACAAATGCTCATTTTTCGTTTATTTTCACCTTCGAAGAAGTTTCAACAAGATGTTCGTTATACTAACCTTGGAAAATAATTATGCAATCTCTGAATAACTTGAACTTATGATCTCTGGTCTTGCTAATACATTTTTGATCTACAGAAGAAATTCTGGAAGAAAATAAACGAATCGATAAAAACGAGACTTTCAGGTTTTAGAAACGAGATTTGAAAAATCTGGAAAAGTTATGGAAAAAACT</canonical>
            <polymorphic>CCGTGCCTCATCCTAAATGGCGCAGGCAAAGCCTGCGCCTGAGCCTAAGCCTAAGCAGCAACCCTAGAGATAAAAATTAACATTCTTTGAATGTTTCGAATGTTTGAATTTTTTGAATGTTCACCGAACTAACCTAAAAACTAACGTACGATAAACAAGAATACGAATGAAAATAACATCAGTTAGAGAAGAAAATTTTGTAACTAAACAAAACAAAAATTAGAATTCCCTTAAGGAAAATTGACTACAAAAATGTTGGAAGTATTAGAAATCGACATTAGTACTGGGAATTTAAAATTGTTGCTCCCCTTCTGATTACAGTTAACTTTTCATATTTAAACTGGTAATTTCGGGGAAAGGTCGATCTTAAGAACTTTTGTTGGGAAACCAACGAAAGATAGAGGAACCGGAAAAAAATCTATTGAAAGTTCCGAAAATCATTTTAAAAACTTGTATTGTTTATGATTTCTTTGTTCAACCTTCCGTAGATCAAAAATAAYACTAGACTTTTTTCTAATTAAATTTTCGGTAGATCAAAAATGTATTAGCAAGACCAGAGATCATAAGTTAAAGTTGTTCAGAGATCGAATAATTATTTTCCAAGGTTAGTATAACTAACGTCTTCGGTAGATCAAAAAGTGTGTCAGCAAGTGTAGAGATGATAAATCTAATTTTTTTTAACTTGAAGAATAATTTTCTGAAATCTTGTAAGCTTAATCTTTGAACTAAATTAATGAAATCATAGTTAACTTTTTTCAACAAATGCTCATTTTTCGTTTATTTTCACCTTCGAAGAAGTTTCAACAAGATGTTCGTTATACTAACCTTGGAAAATAATTATGCAATCTCTGAATAACTTGAACTTATGATCTCTGGTCTTGCTAATACATTTTTGATCTACAGAAGAAATTCTGGAAGAAAATAAACGAATCGATAAAAACGAGACTTTCAGGTTTTAGAAACGAGATTTGAAAAATCTGGAAAAGTTATGGAAAAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTATTGAAAGTTCCGAAAATC</pcr_primer_p1>
		<pcr_primer_p2>TATCATCTCTACACTTGCTGACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATCTATTGAAAGTTCCGAAAATCATTTTAAAAACTTGTATTGTTTATGATTTCTTTGTTCAACCTTCCGTAGATCAAAAATAATACTAGACTTTTTTCTAATTAAATTTTCGGTAGATCAAAAATGTATTAGCAAGACCAGAGATCATAAGTTAAAGTTGTTCAGAGATCGAATAATTATTTTCCAAGGTTAGTATAACTAACGTCTTCGGTAGATCAAAAAGTGTGTCAGCAAGTGTAGAGATGATA</canonical_amplicon>
		<polymorphic_amplicon>ATCTATTGAAAGTTCCGAAAATCATTTTAAAAACTTGTATTGTTTATGATTTCTTTGTTCAACCTTCCGTAGATCAAAAATAAYACTAGACTTTTTTCTAATTAAATTTTCGGTAGATCAAAAATGTATTAGCAAGACCAGAGATCATAAGTTAAAGTTGTTCAGAGATCGAATAATTATTTTCCAAGGTTAGTATAACTAACGTCTTCGGTAGATCAAAAAGTGTGTCAGCAAGTGTAGAGATGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32103</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>51775</contig_pos>
        <strand>+</strand>
        <context>ATTGCAGCAG[A/T]TACAAATGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTTCCAGGAATGATGCAAGTGAATTCAAGTGGATGGAGTATTGCAGCAG</left_flank>
        <right_flank>TACAAATGACGTTGCAACAGCTACTGTGAACATAGAGTGAGGACTGAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCATCCTCAATCTCTGCTTGTTCATCCTCGTCAGCTTCGGAACATTTGTCTATTTGAATGGTGCCGCCTGTACTGGACAAAATAGATGCTCGACGGTTCAGTGATGGGTGGTGCTTGCGATCCAAACGCTCAACCTGGAAATGAAAATCATACATATTTTAAGTTATAGATTGTGACGAACCTTCTTGATAACTTCATTCAGTTTGTCGTTGATTAACACAGACATCGGATCCACGGACCCTTTACCACAACACAAAATTCTTGTACACCAGTTTCCACTTTTCTGAATTGAACTTCCAGATTCCAAGTTTCCAGCGTTTCTCTTTCCATTTCCATTCTTATCGCTCGTTATCGGATCTTCTCTGGTACCCCATGAGACGGTATGCATGTTACAAACACTATAAATTGGAAGCAACATGTACATGCACGGAATAGCCAGGAAGTAAATAGTTCCAGGAATGATGCAAGTGAATTCAAGTGGATGGAGTATTGCAGCAGTTACAAATGACGTTGCAACAGCTACTGTGAACATAGAGTGAGGACTGAGAAGACCGTCTTTCTGGAGTTGGAGTGATGTTCCTACTATGACAGCTGTCATAAGCATTGCAAAAATCGCTCCAATCGTTTGTGCACAGATTAGCTGATGCTCAGGTTTACAGACCAAGCATACCACAATGAATATGATAACAGGAATAGAAACAATAACCAACGAAATCATTGTGTCGATGGTGAATGAAATACTGATAGCTCCGATGATCATGACGAAAATTGTTCCAGGACCCAAAATAGATGAAATCAACATTACCAATTGATAGATGATGTACCAGATTGATATTGATTCGTTGACTCTGACAACATTTCTGTAGTCTTTTAAGAGATCCATGATATTAAAAATAGTGGACGGGATCCATCGACGACGCTGGTTGAAAAACTCGTTGAATCCTTCTGGAGCAAATGTTTGGGCATCGGAGGCAGCGCAGTATTCCACACGGTAGCCAC</canonical>
            <polymorphic>AGCATCCTCAATCTCTGCTTGTTCATCCTCGTCAGCTTCGGAACATTTGTCTATTTGAATGGTGCCGCCTGTACTGGACAAAATAGATGCTCGACGGTTCAGTGATGGGTGGTGCTTGCGATCCAAACGCTCAACCTGGAAATGAAAATCATACATATTTTAAGTTATAGATTGTGACGAACCTTCTTGATAACTTCATTCAGTTTGTCGTTGATTAACACAGACATCGGATCCACGGACCCTTTACCACAACACAAAATTCTTGTACACCAGTTTCCACTTTTCTGAATTGAACTTCCAGATTCCAAGTTTCCAGCGTTTCTCTTTCCATTTCCATTCTTATCGCTCGTTATCGGATCTTCTCTGGTACCCCATGAGACGGTATGCATGTTACAAACACTATAAATTGGAAGCAACATGTACATGCACGGAATAGCCAGGAAGTAAATAGTTCCAGGAATGATGCAAGTGAATTCAAGTGGATGGAGTATTGCAGCAGWTACAAATGACGTTGCAACAGCTACTGTGAACATAGAGTGAGGACTGAGAAGACCGTCTTTCTGGAGTTGGAGTGATGTTCCTACTATGACAGCTGTCATAAGCATTGCAAAAATCGCTCCAATCGTTTGTGCACAGATTAGCTGATGCTCAGGTTTACAGACCAAGCATACCACAATGAATATGATAACAGGAATAGAAACAATAACCAACGAAATCATTGTGTCGATGGTGAATGAAATACTGATAGCTCCGATGATCATGACGAAAATTGTTCCAGGACCCAAAATAGATGAAATCAACATTACCAATTGATAGATGATGTACCAGATTGATATTGATTCGTTGACTCTGACAACATTTCTGTAGTCTTTTAAGAGATCCATGATATTAAAAATAGTGGACGGGATCCATCGACGACGCTGGTTGAAAAACTCGTTGAATCCTTCTGGAGCAAATGTTTGGGCATCGGAGGCAGCGCAGTATTCCACACGGTAGCCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 216 173 109</canonical_bands>
                <polymorphic_bands>611 216 173</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAGTAAATAGTTCCAGGAATG</pcr_primer_p1>
		<pcr_primer_p2>GTTATCATATTCATTGTGGTATGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAAGTAAATAGTTCCAGGAATGATGCAAGTGAATTCAAGTGGATGGAGTATTGCAGCAGTTACAAATGACGTTGCAACAGCTACTGTGAACATAGAGTGAGGACTGAGAAGACCGTCTTTCTGGAGTTGGAGTGATGTTCCTACTATGACAGCTGTCATAAGCATTGCAAAAATCGCTCCAATCGTTTGTGCACAGATTAGCTGATGCTCAGGTTTACAGACCAAGCATACCACAATGAATATGATAAC</canonical_amplicon>
		<polymorphic_amplicon>GGAAGTAAATAGTTCCAGGAATGATGCAAGTGAATTCAAGTGGATGGAGTATTGCAGCAGWTACAAATGACGTTGCAACAGCTACTGTGAACATAGAGTGAGGACTGAGAAGACCGTCTTTCTGGAGTTGGAGTGATGTTCCTACTATGACAGCTGTCATAAGCATTGCAAAAATCGCTCCAATCGTTTGTGCACAGATTAGCTGATGCTCAGGTTTACAGACCAAGCATACCACAATGAATATGATAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32104</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>86931</contig_pos>
        <strand>+</strand>
        <context>CGTACTTTTT[G/T]GCATATCTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAAACTGAGTATCTGCCAAAACGATCTGGGTGTTCAACCCGTACTTTTT</left_flank>
        <right_flank>GCATATCTTCCAATTGAAGAGAGTGTACCTCCTGTTCCAGCAGGGTGAAT</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATACGTCATCTCGTAGTATTTCCCGGAATCTGCTAGTATTGTTGCTATGCTCACCGGTTGAGTTTTATACAATGCCCCAATATGCAAAGCAGCTAGAAAATTCACTCCAGTACTTGTCCCTCCATTTATTCCAATATCTCTTGCCACTTTCATAGCAGCAGTACTGGCAAGATCAGGAATTTTTAAAACACGATCAATAACTGCTGGATCTAGACTAGTTGTCTCTGCTATTTTTGCAGGTCCCATAGCTCCATAACCAATTCCAGCCATACCAGGAGTGATCCAGTGATGAGCACCGGTTTGTTTTGAGAAACTTCAATAGGTATCTTGTATTAAATGTGGTGAGACTTTTTTGTTAGTTGGTCAATAGAAGTCTTTTGAGGATTTTAAGTCAGAGGCAAAAACAAAGTTTCACTTACGTTCCATTGAGCACATAATCATAGTAAATTGAAAACTGAGTATCTGCCAAAACGATCTGGGTGTTCAACCCGTACTTTTTGGCATATCTTCCAATTGAAGAGAGTGTACCTCCTGTTCCAGCAGGGTGAATAAAGACACCTGGAGGTGTGTGGTTCAGCTGAATCAAGAGTTCATCCATGAGATTTGCAGACTTTTTAGTAGAAGAACCGCCTGCAAAGTTCAACTATTTGGGAAAGTGCTGTTAGGGTATTACTCTCATGGAATTCCTCTGCATGGAAAGCATTCTTAAACTGATTCATAAAAAATCCACCAGTTGATTTGGCTAGCTGTTCGGCTATTATTAATCTGAAAACGGAACGATTGTGTTTGACAGATATTTGGTAAACAACCTATCAGAAATAGGAACTCTAACCACCGATCCACCCTGCTCTTCAATGCGTTGAACTTTCACTAATTCAATTGTATCAGGAACCTGCACTAACTCAATTTAGATTTTCTAGAATGGTACTCAAAAACCCACCACCGCAGTAAATTGCAACCCCAACAGTCTACACATGTACCCCAGCGAGCAAGCAGTATT</canonical>
            <polymorphic>ATACGTCATCTCGTAGTATTTCCCGGAATCTGCTAGTATTGTTGCTATGCTCACCGGTTGAGTTTTATACAATGCCCCAATATGCAAAGCAGCTAGAAAATTCACTCCAGTACTTGTCCCTCCATTTATTCCAATATCTCTTGCCACTTTCATAGCAGCAGTACTGGCAAGATCAGGAATTTTTAAAACACGATCAATAACTGCTGGATCTAGACTAGTTGTCTCTGCTATTTTTGCAGGTCCCATAGCTCCATAACCAATTCCAGCCATACCAGGAGTGATCCAGTGATGAGCACCGGTTTGTTTTGAGAAACTTCAATAGGTATCTTGTATTAAATGTGGTGAGACTTTTTTGTTAGTTGGTCAATAGAAGTCTTTTGAGGATTTTAAGTCAGAGGCAAAAACAAAGTTTCACTTACGTTCCATTGAGCACATAATCATAGTAAATTGAAAACTGAGTATCTGCCAAAACGATCTGGGTGTTCAACCCGTACTTTTTKGCATATCTTCCAATTGAAGAGAGTGTACCTCCTGTTCCAGCAGGGTGAATAAAGACACCTGGAGGTGTGTGGTTCAGCTGAATCAAGAGTTCATCCATGAGATTTGCAGACTTTTTAGTAGAAGAACCGCCTGCAAAGTTCAACTATTTGGGAAAGTGCTGTTAGGGTATTACTCTCATGGAATTCCTCTGCATGGAAAGCATTCTTAAACTGATTCATAAAAAATCCACCAGTTGATTTGGCTAGCTGTTCGGCTATTATTAATCTGAAAACGGAACGATTGTGTTTGACAGATATTTGGTAAACAACCTATCAGAAATAGGAACTCTAACCACCGATCCACCCTGCTCTTCAATGCGTTGAACTTTCACTAATTCAATTGTATCAGGAACCTGCACTAACTCAATTTAGATTTTCTAGAATGGTACTCAAAAACCCACCACCGCAGTAAATTGCAACCCCAACAGTCTACACATGTACCCCAGCGAGCAAGCAGTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTGAGGATTTTAAGTCAGA</pcr_primer_p1>
		<pcr_primer_p2>CTACTAAAAAGTCTGCAAATCTCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTGAGGATTTTAAGTCAGAGGCAAAAACAAAGTTTCACTTACGTTCCATTGAGCACATAATCATAGTAAATTGAAAACTGAGTATCTGCCAAAACGATCTGGGTGTTCAACCCGTACTTTTTGGCATATCTTCCAATTGAAGAGAGTGTACCTCCTGTTCCAGCAGGGTGAATAAAGACACCTGGAGGTGTGTGGTTCAGCTGAATCAAGAGTTCATCCATGAGATTTGCAGACTTTTTAGTAG</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTGAGGATTTTAAGTCAGAGGCAAAAACAAAGTTTCACTTACGTTCCATTGAGCACATAATCATAGTAAATTGAAAACTGAGTATCTGCCAAAACGATCTGGGTGTTCAACCCGTACTTTTTKGCATATCTTCCAATTGAAGAGAGTGTACCTCCTGTTCCAGCAGGGTGAATAAAGACACCTGGAGGTGTGTGGTTCAGCTGAATCAAGAGTTCATCCATGAGATTTGCAGACTTTTTAGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32105</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>196853</contig_pos>
        <strand></strand>
        <context>ccacggtagt[G/C]yatggctaca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AGGTAATTACCAGTGAAAATTCGCGGCTACGCCGCGATTTCCACGGTAGT</left_flank>
        <right_flank>TATGGCTACATACCACACACCATTATAACTGTCCCATGCCCTTTGGAGTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAATGGGTGACTAGATAAGAATGCGGTTTATATGGGACACTCCTCCTGCTTGCTTCGGACACTGGACTGAAAATCGGATACGAACTGCGTAAGGCACCCGTCTTTTCTTTTATAGCCGCCACGGCACCGGTGTCCTAGAGGATACGGATGCGCGTTGAGATAGCGTGCGGATCGGAGAGAGATGTAGACATCGGCGTCGTTTGTTCCTTGGCGCTGGACGAGTACTTGCATGGATAAGGGGGCGGCGCCTAAAACAACGGAATGAAAAGGACAAGAAGAAGAAGTAGGAGATGCTTCCTATTGAGGGATTGAACATTAACCTCAAGAATTGATGAAACTCAAAAAATGGACCGATTTTGGATATTTTCAGAAAAAAACTTGAAAGTTGCAGAGCCCATTTATGAAACTGAAAAATTACCCACTGAAAAAAACTAAGATTTTTCAAGTAGGTAATTACCAGTGAAAATTCGCGGCTACGCCGCGATTTCCACGGTAGTGTATGGCTACATACCACACACCATTATAACTGTCCCATGCCCTTTGGAGTTATTCAAGTAAATGTCCGAGACGGACACACAGACACACACACAGAAAAGTTTCCCTAGTAAGAAGTAGATTTAAAATGTTTTTAAATCGTCGATTTTTTTAGTAAAAAAATATACTTTTGTGTTTTTCCAGAGAATATAATAGAGGCGATAAAAGCACTCTGATCTGATGTTTTCATGAAAATTTACTCAAGAATAGAGGAGTGTACAGAAGGGAGATACTCCAATAGAGGGCAAATATACTTGCTCTGTCTTCCAGAAATTCTATTTTTTTAATACAAATAAAATCTGATTTTTCAAAATAGTGATTTACCTGATTTGAGCTATTTTGGACAGAAAAAAATTTTTAAAAAAGGAAAAATGCTTTAACGGATTTTCAGTAAAAAAAAGAGAAAAATTAAGACCATTTTTCGAATTGACTACTTTTATACCAAGCTTCCATACTTTTCCAAC</canonical>
            <polymorphic>TAAAATGGGTGACTAGATAAGAATGCGGTTTATATGGGACACTCCTCCTGCTTGCTTCGGACACTGGACTGAAAATCGGATACGAACTGCGTAAGGCACCCGTCTTTTCTTTTATAGCCGCCACGGCACCGGTGTCCTAGAGGATACGGATGCGCGTTGAGATAGCGTGCGGATCGGAGAGAGATGTAGACATCGGCGTCGTTTGTTCCTTGGCGCTGGACGAGTACTTGCATGGATAAGGGGGCGGCGCCTAAAACAACGGAATGAAAAGGACAAGAAGAAGAAGTAGGAGATGCTTCCTATTGAGGGATTGAACATTAACCTCAAGAATTGATGAAACTCAAAAAATGGACCGATTTTGGATATTTTCAGAAAAAAACTTGAAAGTTGCAGAGCCCATTTATGAAACTGAAAAATTACCCACTGAAAAAAACTAAGATTTTTCAAGTAGGTAATTACCAGTGAAAATTCGCGGCTACGCCGCGATTTCCACGGTAGTSTATGGCTACATACCACACACCATTATAACTGTCCCATGCCCTTTGGAGTTATTCAAGTAAATGTCCGAGACGGACACACAGACACACACACAGAAAAGTTTCCCTAGTAAGAAGTAGATTTAAAATGTTTTTAAATCGTCGATTTTTTTAGTAAAAAAATATACTTTTGTGTTTTTCCAGAGAATATAATAGAGGCGATAAAAGCACTCTGATCTGATGTTTTCATGAAAATTTACTCAAGAATAGAGGAGTGTACAGAAGGGAGATACTCCAATAGAGGGCAAATATACTTGCTCTGTCTTCCAGAAATTCTATTTTTTTAATACAAATAAAATCTGATTTTTCAAAATAGTGATTTACCTGATTTGAGCTATTTTGGACAGAAAAAAATTTTTAAAAAAGGAAAAATGCTTTAACGGATTTTCAGTAAAAAAAAGAGAAAAATTAAGACCATTTTTCGAATTGACTACTTTTATACCAAGCTTCCATACTTTTCCAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACNNNNGTG</site>
                <isoschizomers>
                    <enzyme>AleI</enzyme>
                    <enzyme>OliI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>254 146 101 81 57 47 41 35 35 35 30 28 25 22 15 11 8 6 6 5 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>254 146 101 81 57 47 41 35 35 35 30 28 25 23 22 11 6 6 5 2 2 2 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTGAAAAATTACCCACTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TCTCTGGAAAAACACAAAAGTAT</pcr_primer_p2>
		<pcr_amplicon_size>276</pcr_amplicon_size>
		<canonical_amplicon>ACTGAAAAATTACCCACTGAAAAAAACTAAGATTTTTCAAGTAGGTAATTACCAGTGAAAATTCGCGGCTACGCCGCGATTTCCACGGTAGTGTATGGCTACATACCACACACCATTATAACTGTCCCATGCCCTTTGGAGTTATTCAAGTAAATGTCCGAGACGGACACACAGACACACACACAGAAAAGTTTCCCTAGTAAGAAGTAGATTTAAAATGTTTTTAAATCGTCGATTTTTTTAGTAAAAAAATATACTTTTGTGTTTTTCCAGAGA</canonical_amplicon>
		<polymorphic_amplicon>ACTGAAAAATTACCCACTGAAAAAAACTAAGATTTTTCAAGTAGGTAATTACCAGTGAAAATTCGCGGCTACGCCGCGATTTCCACGGTAGTSTATGGCTACATACCACACACCATTATAACTGTCCCATGCCCTTTGGAGTTATTCAAGTAAATGTCCGAGACGGACACACAGACACACACACAGAAAAGTTTCCCTAGTAAGAAGTAGATTTAAAATGTTTTTAAATCGTCGATTTTTTTAGTAAAAAAATATACTTTTGTGTTTTTCCAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32106</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>196854</contig_pos>
        <strand></strand>
        <context>cacggtagts[T/C]atggctacat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGTAATTACCAGTGAAAATTCGCGGCTACGCCGCGATTTCCACGGTAGTG</left_flank>
        <right_flank>ATGGCTACATACCACACACCATTATAACTGTCCCATGCCCTTTGGAGTTA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATGGGTGACTAGATAAGAATGCGGTTTATATGGGACACTCCTCCTGCTTGCTTCGGACACTGGACTGAAAATCGGATACGAACTGCGTAAGGCACCCGTCTTTTCTTTTATAGCCGCCACGGCACCGGTGTCCTAGAGGATACGGATGCGCGTTGAGATAGCGTGCGGATCGGAGAGAGATGTAGACATCGGCGTCGTTTGTTCCTTGGCGCTGGACGAGTACTTGCATGGATAAGGGGGCGGCGCCTAAAACAACGGAATGAAAAGGACAAGAAGAAGAAGTAGGAGATGCTTCCTATTGAGGGATTGAACATTAACCTCAAGAATTGATGAAACTCAAAAAATGGACCGATTTTGGATATTTTCAGAAAAAAACTTGAAAGTTGCAGAGCCCATTTATGAAACTGAAAAATTACCCACTGAAAAAAACTAAGATTTTTCAAGTAGGTAATTACCAGTGAAAATTCGCGGCTACGCCGCGATTTCCACGGTAGTGTATGGCTACATACCACACACCATTATAACTGTCCCATGCCCTTTGGAGTTATTCAAGTAAATGTCCGAGACGGACACACAGACACACACACAGAAAAGTTTCCCTAGTAAGAAGTAGATTTAAAATGTTTTTAAATCGTCGATTTTTTTAGTAAAAAAATATACTTTTGTGTTTTTCCAGAGAATATAATAGAGGCGATAAAAGCACTCTGATCTGATGTTTTCATGAAAATTTACTCAAGAATAGAGGAGTGTACAGAAGGGAGATACTCCAATAGAGGGCAAATATACTTGCTCTGTCTTCCAGAAATTCTATTTTTTTAATACAAATAAAATCTGATTTTTCAAAATAGTGATTTACCTGATTTGAGCTATTTTGGACAGAAAAAAATTTTTAAAAAAGGAAAAATGCTTTAACGGATTTTCAGTAAAAAAAAGAGAAAAATTAAGACCATTTTTCGAATTGACTACTTTTATACCAAGCTTCCATACTTTTCCAACA</canonical>
            <polymorphic>AAAATGGGTGACTAGATAAGAATGCGGTTTATATGGGACACTCCTCCTGCTTGCTTCGGACACTGGACTGAAAATCGGATACGAACTGCGTAAGGCACCCGTCTTTTCTTTTATAGCCGCCACGGCACCGGTGTCCTAGAGGATACGGATGCGCGTTGAGATAGCGTGCGGATCGGAGAGAGATGTAGACATCGGCGTCGTTTGTTCCTTGGCGCTGGACGAGTACTTGCATGGATAAGGGGGCGGCGCCTAAAACAACGGAATGAAAAGGACAAGAAGAAGAAGTAGGAGATGCTTCCTATTGAGGGATTGAACATTAACCTCAAGAATTGATGAAACTCAAAAAATGGACCGATTTTGGATATTTTCAGAAAAAAACTTGAAAGTTGCAGAGCCCATTTATGAAACTGAAAAATTACCCACTGAAAAAAACTAAGATTTTTCAAGTAGGTAATTACCAGTGAAAATTCGCGGCTACGCCGCGATTTCCACGGTAGTGYATGGCTACATACCACACACCATTATAACTGTCCCATGCCCTTTGGAGTTATTCAAGTAAATGTCCGAGACGGACACACAGACACACACACAGAAAAGTTTCCCTAGTAAGAAGTAGATTTAAAATGTTTTTAAATCGTCGATTTTTTTAGTAAAAAAATATACTTTTGTGTTTTTCCAGAGAATATAATAGAGGCGATAAAAGCACTCTGATCTGATGTTTTCATGAAAATTTACTCAAGAATAGAGGAGTGTACAGAAGGGAGATACTCCAATAGAGGGCAAATATACTTGCTCTGTCTTCCAGAAATTCTATTTTTTTAATACAAATAAAATCTGATTTTTCAAAATAGTGATTTACCTGATTTGAGCTATTTTGGACAGAAAAAAATTTTTAAAAAAGGAAAAATGCTTTAACGGATTTTCAGTAAAAAAAAGAGAAAAATTAAGACCATTTTTCGAATTGACTACTTTTATACCAAGCTTCCATACTTTTCCAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTGAAAAATTACCCACTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TCTCTGGAAAAACACAAAAGTAT</pcr_primer_p2>
		<pcr_amplicon_size>276</pcr_amplicon_size>
		<canonical_amplicon>ACTGAAAAATTACCCACTGAAAAAAACTAAGATTTTTCAAGTAGGTAATTACCAGTGAAAATTCGCGGCTACGCCGCGATTTCCACGGTAGTGTATGGCTACATACCACACACCATTATAACTGTCCCATGCCCTTTGGAGTTATTCAAGTAAATGTCCGAGACGGACACACAGACACACACACAGAAAAGTTTCCCTAGTAAGAAGTAGATTTAAAATGTTTTTAAATCGTCGATTTTTTTAGTAAAAAAATATACTTTTGTGTTTTTCCAGAGA</canonical_amplicon>
		<polymorphic_amplicon>ACTGAAAAATTACCCACTGAAAAAAACTAAGATTTTTCAAGTAGGTAATTACCAGTGAAAATTCGCGGCTACGCCGCGATTTCCACGGTAGTGYATGGCTACATACCACACACCATTATAACTGTCCCATGCCCTTTGGAGTTATTCAAGTAAATGTCCGAGACGGACACACAGACACACACACAGAAAAGTTTCCCTAGTAAGAAGTAGATTTAAAATGTTTTTAAATCGTCGATTTTTTTAGTAAAAAAATATACTTTTGTGTTTTTCCAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32107</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>196921</contig_pos>
        <strand></strand>
        <context>taaatgtccg[A/G]gacggacaca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACCATTATAACTGTCCCATGCCCTTTGGAGTTATTCAAGTAAATGTCCG</left_flank>
        <right_flank>GACGGACACACAGACACACACACAGAAAAGTTTCCCTAGTAAGAAGTAGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAAAATCGGATACGAACTGCGTAAGGCACCCGTCTTTTCTTTTATAGCCGCCACGGCACCGGTGTCCTAGAGGATACGGATGCGCGTTGAGATAGCGTGCGGATCGGAGAGAGATGTAGACATCGGCGTCGTTTGTTCCTTGGCGCTGGACGAGTACTTGCATGGATAAGGGGGCGGCGCCTAAAACAACGGAATGAAAAGGACAAGAAGAAGAAGTAGGAGATGCTTCCTATTGAGGGATTGAACATTAACCTCAAGAATTGATGAAACTCAAAAAATGGACCGATTTTGGATATTTTCAGAAAAAAACTTGAAAGTTGCAGAGCCCATTTATGAAACTGAAAAATTACCCACTGAAAAAAACTAAGATTTTTCAAGTAGGTAATTACCAGTGAAAATTCGCGGCTACGCCGCGATTTCCACGGTAGTGTATGGCTACATACCACACACCATTATAACTGTCCCATGCCCTTTGGAGTTATTCAAGTAAATGTCCGAGACGGACACACAGACACACACACAGAAAAGTTTCCCTAGTAAGAAGTAGATTTAAAATGTTTTTAAATCGTCGATTTTTTTAGTAAAAAAATATACTTTTGTGTTTTTCCAGAGAATATAATAGAGGCGATAAAAGCACTCTGATCTGATGTTTTCATGAAAATTTACTCAAGAATAGAGGAGTGTACAGAAGGGAGATACTCCAATAGAGGGCAAATATACTTGCTCTGTCTTCCAGAAATTCTATTTTTTTAATACAAATAAAATCTGATTTTTCAAAATAGTGATTTACCTGATTTGAGCTATTTTGGACAGAAAAAAATTTTTAAAAAAGGAAAAATGCTTTAACGGATTTTCAGTAAAAAAAAGAGAAAAATTAAGACCATTTTTCGAATTGACTACTTTTATACCAAGCTTCCATACTTTTCCAACATATTCTATTCTGAAAAGAAAAGTAGATTTTCGAATTCTCCGTATTTCAAAGTGCCAGTCTAACAATT</canonical>
            <polymorphic>CTGAAAATCGGATACGAACTGCGTAAGGCACCCGTCTTTTCTTTTATAGCCGCCACGGCACCGGTGTCCTAGAGGATACGGATGCGCGTTGAGATAGCGTGCGGATCGGAGAGAGATGTAGACATCGGCGTCGTTTGTTCCTTGGCGCTGGACGAGTACTTGCATGGATAAGGGGGCGGCGCCTAAAACAACGGAATGAAAAGGACAAGAAGAAGAAGTAGGAGATGCTTCCTATTGAGGGATTGAACATTAACCTCAAGAATTGATGAAACTCAAAAAATGGACCGATTTTGGATATTTTCAGAAAAAAACTTGAAAGTTGCAGAGCCCATTTATGAAACTGAAAAATTACCCACTGAAAAAAACTAAGATTTTTCAAGTAGGTAATTACCAGTGAAAATTCGCGGCTACGCCGCGATTTCCACGGTAGTGTATGGCTACATACCACACACCATTATAACTGTCCCATGCCCTTTGGAGTTATTCAAGTAAATGTCCGRGACGGACACACAGACACACACACAGAAAAGTTTCCCTAGTAAGAAGTAGATTTAAAATGTTTTTAAATCGTCGATTTTTTTAGTAAAAAAATATACTTTTGTGTTTTTCCAGAGAATATAATAGAGGCGATAAAAGCACTCTGATCTGATGTTTTCATGAAAATTTACTCAAGAATAGAGGAGTGTACAGAAGGGAGATACTCCAATAGAGGGCAAATATACTTGCTCTGTCTTCCAGAAATTCTATTTTTTTAATACAAATAAAATCTGATTTTTCAAAATAGTGATTTACCTGATTTGAGCTATTTTGGACAGAAAAAAATTTTTAAAAAAGGAAAAATGCTTTAACGGATTTTCAGTAAAAAAAAGAGAAAAATTAAGACCATTTTTCGAATTGACTACTTTTATACCAAGCTTCCATACTTTTCCAACATATTCTATTCTGAAAAGAAAAGTAGATTTTCGAATTCTCCGTATTTCAAAGTGCCAGTCTAACAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>195 195 175 144 122 98 56 10 5</canonical_bands>
                <polymorphic_bands>339 195 175 122 98 56 10 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTGAAAAATTACCCACTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TCTCTGGAAAAACACAAAAGTAT</pcr_primer_p2>
		<pcr_amplicon_size>276</pcr_amplicon_size>
		<canonical_amplicon>ACTGAAAAATTACCCACTGAAAAAAACTAAGATTTTTCAAGTAGGTAATTACCAGTGAAAATTCGCGGCTACGCCGCGATTTCCACGGTAGTGTATGGCTACATACCACACACCATTATAACTGTCCCATGCCCTTTGGAGTTATTCAAGTAAATGTCCGAGACGGACACACAGACACACACACAGAAAAGTTTCCCTAGTAAGAAGTAGATTTAAAATGTTTTTAAATCGTCGATTTTTTTAGTAAAAAAATATACTTTTGTGTTTTTCCAGAGA</canonical_amplicon>
		<polymorphic_amplicon>ACTGAAAAATTACCCACTGAAAAAAACTAAGATTTTTCAAGTAGGTAATTACCAGTGAAAATTCGCGGCTACGCCGCGATTTCCACGGTAGTGTATGGCTACATACCACACACCATTATAACTGTCCCATGCCCTTTGGAGTTATTCAAGTAAATGTCCGRGACGGACACACAGACACACACACAGAAAAGTTTCCCTAGTAAGAAGTAGATTTAAAATGTTTTTAAATCGTCGATTTTTTTAGTAAAAAAATATACTTTTGTGTTTTTCCAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32108</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>244855</contig_pos>
        <strand></strand>
        <context>aggaacggaa[C/T]ccgmgatccT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTAAGGTGTTTACCAGAGATGCACGGAATGACTTTTTTGAGGAACGGAA</left_flank>
        <right_flank>CCGGGATCCTGTGTTTATGATAAATACATTTTATAATAAATTCAATTTTC</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAGAAGTGGATTAAGAGAAAAGTAAGGGTTTTACGGTTATGAAACACTTGAAAATTGGATTTCTAGGTCGTGGAGACAAAGCAAGAACCATTGATTTATGCGATCAGATTTGGTGGAGTACTATTGACCTGTAAGTGAACTAGTGATCTAAAAAAATTAGCAGCTCAATTGGGAATTCGAGAAAATTAACAAGTATCCTAACTAGAATAAAAAATAATGAAAAAAGTAACATAGTTTTTGTTTTCTGTGGGTACCGTAAAGACTAGTACATAGAAGGCTTAAACTTTGAGCTCGATTATCTCAATTTCTATAAGAGATATCAAAAAGATATCAACTGATAAAGTGTTGGTTATATTATGAGAGACATTTTATCAGTTGATACACTTTTGTTATCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGCAAGCATAGGGTGAGCTTCTTTTAAGGTGTTTACCAGAGATGCACGGAATGACTTTTTTGAGGAACGGAACCCGGGATCCTGTGTTTATGATAAATACATTTTATAATAAATTCAATTTTCTAGGCGCCATGGCTCAACTGATTCCCCACTTGGCACTATTCATCTCTCTCGTTGGAAGTGTAGCTGGAACATCCCTCACCCTTGTCTTCCCACCACTTATCGAGCTTTTGTGCTGCTATTCAAGGCAAGAATTGACCAAATGGGTTTGGATAAGAAACATTGGATTGATGCTGTTCGCTTTAGTCGGATTCACAACTGGTACCTATGCCAGTATGGTACAGATTGTGGAGGCTTTTGGAAAGTCTGATGTTTAGAAATTTTAATTTTTAGAGTTTTGTTTTGATGATAATTTGATGATGTTGGTTTTTCGAATGAGCTAGATAGAGTTTTTAAAGAAATAAAATTGTTTGATCTCAATTTGCTTGTTTTGTTTGCAGAATCTCATTTTGAATATTTTTGTGCTTCCTGCTTTACAGTAATCCTGGACGTTAATACCCTGCTCCACATAAT</canonical>
            <polymorphic>CGAGAAGTGGATTAAGAGAAAAGTAAGGGTTTTACGGTTATGAAACACTTGAAAATTGGATTTCTAGGTCGTGGAGACAAAGCAAGAACCATTGATTTATGCGATCAGATTTGGTGGAGTACTATTGACCTGTAAGTGAACTAGTGATCTAAAAAAATTAGCAGCTCAATTGGGAATTCGAGAAAATTAACAAGTATCCTAACTAGAATAAAAAATAATGAAAAAAGTAACATAGTTTTTGTTTTCTGTGGGTACCGTAAAGACTAGTACATAGAAGGCTTAAACTTTGAGCTCGATTATCTCAATTTCTATAAGAGATATCAAAAAGATATCAACTGATAAAGTGTTGGTTATATTATGAGAGACATTTTATCAGTTGATACACTTTTGTTATCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGCAAGCATAGGGTGAGCTTCTTTTAAGGTGTTTACCAGAGATGCACGGAATGACTTTTTTGAGGAACGGAAYCCGGGATCCTGTGTTTATGATAAATACATTTTATAATAAATTCAATTTTCTAGGCGCCATGGCTCAACTGATTCCCCACTTGGCACTATTCATCTCTCTCGTTGGAAGTGTAGCTGGAACATCCCTCACCCTTGTCTTCCCACCACTTATCGAGCTTTTGTGCTGCTATTCAAGGCAAGAATTGACCAAATGGGTTTGGATAAGAAACATTGGATTGATGCTGTTCGCTTTAGTCGGATTCACAACTGGTACCTATGCCAGTATGGTACAGATTGTGGAGGCTTTTGGAAAGTCTGATGTTTAGAAATTTTAATTTTTAGAGTTTTGTTTTGATGATAATTTGATGATGTTGGTTTTTCGAATGAGCTAGATAGAGTTTTTAAAGAAATAAAATTGTTTGATCTCAATTTGCTTGTTTTGTTTGCAGAATCTCATTTTGAATATTTTTGTGCTTCCTGCTTTACAGTAATCCTGGACGTTAATACCCTGCTCCACATAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>502 498</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>501 471 28</canonical_bands>
                <polymorphic_bands>502 470 28</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>500 443 57</canonical_bands>
                <polymorphic_bands>557 443</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>253 250 245 195 49 8</canonical_bands>
                <polymorphic_bands>253 253 250 195 49</polymorphic_bands>
            </assay>
            <assay>
                <site>CCCGGG</site>
                <isoschizomers>
                    <enzyme>Cfr9I</enzyme>
                    <enzyme>PspAI</enzyme>
                    <enzyme>SmaI</enzyme>
                    <enzyme>XmaCI</enzyme>
                    <enzyme>XmaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTAACATAGTTTTTGTTTTCTGTG</pcr_primer_p1>
		<pcr_primer_p2>AGAGATGAATAGTGCCAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>373</pcr_amplicon_size>
		<canonical_amplicon>AAGTAACATAGTTTTTGTTTTCTGTGGGTACCGTAAAGACTAGTACATAGAAGGCTTAAACTTTGAGCTCGATTATCTCAATTTCTATAAGAGATATCAAAAAGATATCAACTGATAAAGTGTTGGTTATATTATGAGAGACATTTTATCAGTTGATACACTTTTGTTATCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGCAAGCATAGGGTGAGCTTCTTTTAAGGTGTTTACCAGAGATGCACGGAATGACTTTTTTGAGGAACGGAACCCGGGATCCTGTGTTTATGATAAATACATTTTATAATAAATTCAATTTTCTAGGCGCCATGGCTCAACTGATTCCCCACTTGGCACTATTCATCTCT</canonical_amplicon>
		<polymorphic_amplicon>AAGTAACATAGTTTTTGTTTTCTGTGGGTACCGTAAAGACTAGTACATAGAAGGCTTAAACTTTGAGCTCGATTATCTCAATTTCTATAAGAGATATCAAAAAGATATCAACTGATAAAGTGTTGGTTATATTATGAGAGACATTTTATCAGTTGATACACTTTTGTTATCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGCAAGCATAGGGTGAGCTTCTTTTAAGGTGTTTACCAGAGATGCACGGAATGACTTTTTTGAGGAACGGAAYCCGGGATCCTGTGTTTATGATAAATACATTTTATAATAAATTCAATTTTCTAGGCGCCATGGCTCAACTGATTCCCCACTTGGCACTATTCATCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32109</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>244859</contig_pos>
        <strand>+</strand>
        <context>acggaayccg[A/C]gatccTGTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGGTGTTTACCAGAGATGCACGGAATGACTTTTTTGAGGAACGGAACCCG</left_flank>
        <right_flank>GATCCTGTGTTTATGATAAATACATTTTATAATAAATTCAATTTTCTAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTGGATTAAGAGAAAAGTAAGGGTTTTACGGTTATGAAACACTTGAAAATTGGATTTCTAGGTCGTGGAGACAAAGCAAGAACCATTGATTTATGCGATCAGATTTGGTGGAGTACTATTGACCTGTAAGTGAACTAGTGATCTAAAAAAATTAGCAGCTCAATTGGGAATTCGAGAAAATTAACAAGTATCCTAACTAGAATAAAAAATAATGAAAAAAGTAACATAGTTTTTGTTTTCTGTGGGTACCGTAAAGACTAGTACATAGAAGGCTTAAACTTTGAGCTCGATTATCTCAATTTCTATAAGAGATATCAAAAAGATATCAACTGATAAAGTGTTGGTTATATTATGAGAGACATTTTATCAGTTGATACACTTTTGTTATCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGCAAGCATAGGGTGAGCTTCTTTTAAGGTGTTTACCAGAGATGCACGGAATGACTTTTTTGAGGAACGGAACCCGGGATCCTGTGTTTATGATAAATACATTTTATAATAAATTCAATTTTCTAGGCGCCATGGCTCAACTGATTCCCCACTTGGCACTATTCATCTCTCTCGTTGGAAGTGTAGCTGGAACATCCCTCACCCTTGTCTTCCCACCACTTATCGAGCTTTTGTGCTGCTATTCAAGGCAAGAATTGACCAAATGGGTTTGGATAAGAAACATTGGATTGATGCTGTTCGCTTTAGTCGGATTCACAACTGGTACCTATGCCAGTATGGTACAGATTGTGGAGGCTTTTGGAAAGTCTGATGTTTAGAAATTTTAATTTTTAGAGTTTTGTTTTGATGATAATTTGATGATGTTGGTTTTTCGAATGAGCTAGATAGAGTTTTTAAAGAAATAAAATTGTTTGATCTCAATTTGCTTGTTTTGTTTGCAGAATCTCATTTTGAATATTTTTGTGCTTCCTGCTTTACAGTAATCCTGGACGTTAATACCCTGCTCCACATAATCATT</canonical>
            <polymorphic>AAGTGGATTAAGAGAAAAGTAAGGGTTTTACGGTTATGAAACACTTGAAAATTGGATTTCTAGGTCGTGGAGACAAAGCAAGAACCATTGATTTATGCGATCAGATTTGGTGGAGTACTATTGACCTGTAAGTGAACTAGTGATCTAAAAAAATTAGCAGCTCAATTGGGAATTCGAGAAAATTAACAAGTATCCTAACTAGAATAAAAAATAATGAAAAAAGTAACATAGTTTTTGTTTTCTGTGGGTACCGTAAAGACTAGTACATAGAAGGCTTAAACTTTGAGCTCGATTATCTCAATTTCTATAAGAGATATCAAAAAGATATCAACTGATAAAGTGTTGGTTATATTATGAGAGACATTTTATCAGTTGATACACTTTTGTTATCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGCAAGCATAGGGTGAGCTTCTTTTAAGGTGTTTACCAGAGATGCACGGAATGACTTTTTTGAGGAACGGAACCCGMGATCCTGTGTTTATGATAAATACATTTTATAATAAATTCAATTTTCTAGGCGCCATGGCTCAACTGATTCCCCACTTGGCACTATTCATCTCTCTCGTTGGAAGTGTAGCTGGAACATCCCTCACCCTTGTCTTCCCACCACTTATCGAGCTTTTGTGCTGCTATTCAAGGCAAGAATTGACCAAATGGGTTTGGATAAGAAACATTGGATTGATGCTGTTCGCTTTAGTCGGATTCACAACTGGTACCTATGCCAGTATGGTACAGATTGTGGAGGCTTTTGGAAAGTCTGATGTTTAGAAATTTTAATTTTTAGAGTTTTGTTTTGATGATAATTTGATGATGTTGGTTTTTCGAATGAGCTAGATAGAGTTTTTAAAGAAATAAAATTGTTTGATCTCAATTTGCTTGTTTTGTTTGCAGAATCTCATTTTGAATATTTTTGTGCTTCCTGCTTTACAGTAATCCTGGACGTTAATACCCTGCTCCACATAATCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGATCC</site>
                <isoschizomers>
                    <enzyme>BamHI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>497 471 32</canonical_bands>
                <polymorphic_bands>968 32</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>496 447 57</canonical_bands>
                <polymorphic_bands>553 447</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>254 249 245 195 49 8</canonical_bands>
                <polymorphic_bands>254 249 245 195 57</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCCGGG</site>
                <isoschizomers>
                    <enzyme>Cfr9I</enzyme>
                    <enzyme>PspAI</enzyme>
                    <enzyme>SmaI</enzyme>
                    <enzyme>XmaCI</enzyme>
                    <enzyme>XmaI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTAACATAGTTTTTGTTTTCTGTG</pcr_primer_p1>
		<pcr_primer_p2>AGAGATGAATAGTGCCAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>373</pcr_amplicon_size>
		<canonical_amplicon>AAGTAACATAGTTTTTGTTTTCTGTGGGTACCGTAAAGACTAGTACATAGAAGGCTTAAACTTTGAGCTCGATTATCTCAATTTCTATAAGAGATATCAAAAAGATATCAACTGATAAAGTGTTGGTTATATTATGAGAGACATTTTATCAGTTGATACACTTTTGTTATCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGCAAGCATAGGGTGAGCTTCTTTTAAGGTGTTTACCAGAGATGCACGGAATGACTTTTTTGAGGAACGGAACCCGGGATCCTGTGTTTATGATAAATACATTTTATAATAAATTCAATTTTCTAGGCGCCATGGCTCAACTGATTCCCCACTTGGCACTATTCATCTCT</canonical_amplicon>
		<polymorphic_amplicon>AAGTAACATAGTTTTTGTTTTCTGTGGGTACCGTAAAGACTAGTACATAGAAGGCTTAAACTTTGAGCTCGATTATCTCAATTTCTATAAGAGATATCAAAAAGATATCAACTGATAAAGTGTTGGTTATATTATGAGAGACATTTTATCAGTTGATACACTTTTGTTATCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGCAAGCATAGGGTGAGCTTCTTTTAAGGTGTTTACCAGAGATGCACGGAATGACTTTTTTGAGGAACGGAACCCGMGATCCTGTGTTTATGATAAATACATTTTATAATAAATTCAATTTTCTAGGCGCCATGGCTCAACTGATTCCCCACTTGGCACTATTCATCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32110</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>244953</contig_pos>
        <strand>+</strand>
        <context>ATTCATCTCT[C/G]TCGTYGGAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCTAGGCGCCATGGCTCAACTGATTCCCCACTTGGCACTATTCATCTCT</left_flank>
        <right_flank>TCGTTGGAAGTGTAGCTGGAACATCCCTCACCCTTGTCTTCCCACCACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCGATCAGATTTGGTGGAGTACTATTGACCTGTAAGTGAACTAGTGATCTAAAAAAATTAGCAGCTCAATTGGGAATTCGAGAAAATTAACAAGTATCCTAACTAGAATAAAAAATAATGAAAAAAGTAACATAGTTTTTGTTTTCTGTGGGTACCGTAAAGACTAGTACATAGAAGGCTTAAACTTTGAGCTCGATTATCTCAATTTCTATAAGAGATATCAAAAAGATATCAACTGATAAAGTGTTGGTTATATTATGAGAGACATTTTATCAGTTGATACACTTTTGTTATCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGCAAGCATAGGGTGAGCTTCTTTTAAGGTGTTTACCAGAGATGCACGGAATGACTTTTTTGAGGAACGGAACCCGGGATCCTGTGTTTATGATAAATACATTTTATAATAAATTCAATTTTCTAGGCGCCATGGCTCAACTGATTCCCCACTTGGCACTATTCATCTCTCTCGTTGGAAGTGTAGCTGGAACATCCCTCACCCTTGTCTTCCCACCACTTATCGAGCTTTTGTGCTGCTATTCAAGGCAAGAATTGACCAAATGGGTTTGGATAAGAAACATTGGATTGATGCTGTTCGCTTTAGTCGGATTCACAACTGGTACCTATGCCAGTATGGTACAGATTGTGGAGGCTTTTGGAAAGTCTGATGTTTAGAAATTTTAATTTTTAGAGTTTTGTTTTGATGATAATTTGATGATGTTGGTTTTTCGAATGAGCTAGATAGAGTTTTTAAAGAAATAAAATTGTTTGATCTCAATTTGCTTGTTTTGTTTGCAGAATCTCATTTTGAATATTTTTGTGCTTCCTGCTTTACAGTAATCCTGGACGTTAATACCCTGCTCCACATAATCATTGTTCCACCCTGAGATTTCACTGGTATATTTTTTCCGGAAAAGAACCATACAGGATTCAATAACCAATAATTAATTTTTCCTAAATCCATTGAAT</canonical>
            <polymorphic>ATGCGATCAGATTTGGTGGAGTACTATTGACCTGTAAGTGAACTAGTGATCTAAAAAAATTAGCAGCTCAATTGGGAATTCGAGAAAATTAACAAGTATCCTAACTAGAATAAAAAATAATGAAAAAAGTAACATAGTTTTTGTTTTCTGTGGGTACCGTAAAGACTAGTACATAGAAGGCTTAAACTTTGAGCTCGATTATCTCAATTTCTATAAGAGATATCAAAAAGATATCAACTGATAAAGTGTTGGTTATATTATGAGAGACATTTTATCAGTTGATACACTTTTGTTATCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGCAAGCATAGGGTGAGCTTCTTTTAAGGTGTTTACCAGAGATGCACGGAATGACTTTTTTGAGGAACGGAACCCGGGATCCTGTGTTTATGATAAATACATTTTATAATAAATTCAATTTTCTAGGCGCCATGGCTCAACTGATTCCCCACTTGGCACTATTCATCTCTSTCGTTGGAAGTGTAGCTGGAACATCCCTCACCCTTGTCTTCCCACCACTTATCGAGCTTTTGTGCTGCTATTCAAGGCAAGAATTGACCAAATGGGTTTGGATAAGAAACATTGGATTGATGCTGTTCGCTTTAGTCGGATTCACAACTGGTACCTATGCCAGTATGGTACAGATTGTGGAGGCTTTTGGAAAGTCTGATGTTTAGAAATTTTAATTTTTAGAGTTTTGTTTTGATGATAATTTGATGATGTTGGTTTTTCGAATGAGCTAGATAGAGTTTTTAAAGAAATAAAATTGTTTGATCTCAATTTGCTTGTTTTGTTTGCAGAATCTCATTTTGAATATTTTTGTGCTTCCTGCTTTACAGTAATCCTGGACGTTAATACCCTGCTCCACATAATCATTGTTCCACCCTGAGATTTCACTGGTATATTTTTTCCGGAAAAGAACCATACAGGATTCAATAACCAATAATTAATTTTTCCTAAATCCATTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTAACATAGTTTTTGTTTTCTGTG</pcr_primer_p1>
		<pcr_primer_p2>GATAAGTGGTGGGAAGACAAG</pcr_primer_p2>
		<pcr_amplicon_size>427</pcr_amplicon_size>
		<canonical_amplicon>AAGTAACATAGTTTTTGTTTTCTGTGGGTACCGTAAAGACTAGTACATAGAAGGCTTAAACTTTGAGCTCGATTATCTCAATTTCTATAAGAGATATCAAAAAGATATCAACTGATAAAGTGTTGGTTATATTATGAGAGACATTTTATCAGTTGATACACTTTTGTTATCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGCAAGCATAGGGTGAGCTTCTTTTAAGGTGTTTACCAGAGATGCACGGAATGACTTTTTTGAGGAACGGAACCCGGGATCCTGTGTTTATGATAAATACATTTTATAATAAATTCAATTTTCTAGGCGCCATGGCTCAACTGATTCCCCACTTGGCACTATTCATCTCTCTCGTTGGAAGTGTAGCTGGAACATCCCTCACCCTTGTCTTCCCACCACTTATC</canonical_amplicon>
		<polymorphic_amplicon>AAGTAACATAGTTTTTGTTTTCTGTGGGTACCGTAAAGACTAGTACATAGAAGGCTTAAACTTTGAGCTCGATTATCTCAATTTCTATAAGAGATATCAAAAAGATATCAACTGATAAAGTGTTGGTTATATTATGAGAGACATTTTATCAGTTGATACACTTTTGTTATCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGCAAGCATAGGGTGAGCTTCTTTTAAGGTGTTTACCAGAGATGCACGGAATGACTTTTTTGAGGAACGGAACCCGGGATCCTGTGTTTATGATAAATACATTTTATAATAAATTCAATTTTCTAGGCGCCATGGCTCAACTGATTCCCCACTTGGCACTATTCATCTCTSTCGTTGGAAGTGTAGCTGGAACATCCCTCACCCTTGTCTTCCCACCACTTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32111</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>244958</contig_pos>
        <strand>+</strand>
        <context>TCTCTSTCGT[C/T]GGAAGTGTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCGCCATGGCTCAACTGATTCCCCACTTGGCACTATTCATCTCTCTCGT</left_flank>
        <right_flank>GGAAGTGTAGCTGGAACATCCCTCACCCTTGTCTTCCCACCACTTATCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAGATTTGGTGGAGTACTATTGACCTGTAAGTGAACTAGTGATCTAAAAAAATTAGCAGCTCAATTGGGAATTCGAGAAAATTAACAAGTATCCTAACTAGAATAAAAAATAATGAAAAAAGTAACATAGTTTTTGTTTTCTGTGGGTACCGTAAAGACTAGTACATAGAAGGCTTAAACTTTGAGCTCGATTATCTCAATTTCTATAAGAGATATCAAAAAGATATCAACTGATAAAGTGTTGGTTATATTATGAGAGACATTTTATCAGTTGATACACTTTTGTTATCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGCAAGCATAGGGTGAGCTTCTTTTAAGGTGTTTACCAGAGATGCACGGAATGACTTTTTTGAGGAACGGAACCCGGGATCCTGTGTTTATGATAAATACATTTTATAATAAATTCAATTTTCTAGGCGCCATGGCTCAACTGATTCCCCACTTGGCACTATTCATCTCTCTCGTTGGAAGTGTAGCTGGAACATCCCTCACCCTTGTCTTCCCACCACTTATCGAGCTTTTGTGCTGCTATTCAAGGCAAGAATTGACCAAATGGGTTTGGATAAGAAACATTGGATTGATGCTGTTCGCTTTAGTCGGATTCACAACTGGTACCTATGCCAGTATGGTACAGATTGTGGAGGCTTTTGGAAAGTCTGATGTTTAGAAATTTTAATTTTTAGAGTTTTGTTTTGATGATAATTTGATGATGTTGGTTTTTCGAATGAGCTAGATAGAGTTTTTAAAGAAATAAAATTGTTTGATCTCAATTTGCTTGTTTTGTTTGCAGAATCTCATTTTGAATATTTTTGTGCTTCCTGCTTTACAGTAATCCTGGACGTTAATACCCTGCTCCACATAATCATTGTTCCACCCTGAGATTTCACTGGTATATTTTTTCCGGAAAAGAACCATACAGGATTCAATAACCAATAATTAATTTTTCCTAAATCCATTGAATCATAC</canonical>
            <polymorphic>ATCAGATTTGGTGGAGTACTATTGACCTGTAAGTGAACTAGTGATCTAAAAAAATTAGCAGCTCAATTGGGAATTCGAGAAAATTAACAAGTATCCTAACTAGAATAAAAAATAATGAAAAAAGTAACATAGTTTTTGTTTTCTGTGGGTACCGTAAAGACTAGTACATAGAAGGCTTAAACTTTGAGCTCGATTATCTCAATTTCTATAAGAGATATCAAAAAGATATCAACTGATAAAGTGTTGGTTATATTATGAGAGACATTTTATCAGTTGATACACTTTTGTTATCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGCAAGCATAGGGTGAGCTTCTTTTAAGGTGTTTACCAGAGATGCACGGAATGACTTTTTTGAGGAACGGAACCCGGGATCCTGTGTTTATGATAAATACATTTTATAATAAATTCAATTTTCTAGGCGCCATGGCTCAACTGATTCCCCACTTGGCACTATTCATCTCTCTCGTYGGAAGTGTAGCTGGAACATCCCTCACCCTTGTCTTCCCACCACTTATCGAGCTTTTGTGCTGCTATTCAAGGCAAGAATTGACCAAATGGGTTTGGATAAGAAACATTGGATTGATGCTGTTCGCTTTAGTCGGATTCACAACTGGTACCTATGCCAGTATGGTACAGATTGTGGAGGCTTTTGGAAAGTCTGATGTTTAGAAATTTTAATTTTTAGAGTTTTGTTTTGATGATAATTTGATGATGTTGGTTTTTCGAATGAGCTAGATAGAGTTTTTAAAGAAATAAAATTGTTTGATCTCAATTTGCTTGTTTTGTTTGCAGAATCTCATTTTGAATATTTTTGTGCTTCCTGCTTTACAGTAATCCTGGACGTTAATACCCTGCTCCACATAATCATTGTTCCACCCTGAGATTTCACTGGTATATTTTTTCCGGAAAAGAACCATACAGGATTCAATAACCAATAATTAATTTTTCCTAAATCCATTGAATCATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTAACATAGTTTTTGTTTTCTGTG</pcr_primer_p1>
		<pcr_primer_p2>CACAAAAGCTCGATAAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>438</pcr_amplicon_size>
		<canonical_amplicon>AAGTAACATAGTTTTTGTTTTCTGTGGGTACCGTAAAGACTAGTACATAGAAGGCTTAAACTTTGAGCTCGATTATCTCAATTTCTATAAGAGATATCAAAAAGATATCAACTGATAAAGTGTTGGTTATATTATGAGAGACATTTTATCAGTTGATACACTTTTGTTATCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGCAAGCATAGGGTGAGCTTCTTTTAAGGTGTTTACCAGAGATGCACGGAATGACTTTTTTGAGGAACGGAACCCGGGATCCTGTGTTTATGATAAATACATTTTATAATAAATTCAATTTTCTAGGCGCCATGGCTCAACTGATTCCCCACTTGGCACTATTCATCTCTCTCGTTGGAAGTGTAGCTGGAACATCCCTCACCCTTGTCTTCCCACCACTTATCGAGCTTTTGTG</canonical_amplicon>
		<polymorphic_amplicon>AAGTAACATAGTTTTTGTTTTCTGTGGGTACCGTAAAGACTAGTACATAGAAGGCTTAAACTTTGAGCTCGATTATCTCAATTTCTATAAGAGATATCAAAAAGATATCAACTGATAAAGTGTTGGTTATATTATGAGAGACATTTTATCAGTTGATACACTTTTGTTATCTCTTATAGAAATTGAGATAATTGAGCTCAAAGTGCAAGCATAGGGTGAGCTTCTTTTAAGGTGTTTACCAGAGATGCACGGAATGACTTTTTTGAGGAACGGAACCCGGGATCCTGTGTTTATGATAAATACATTTTATAATAAATTCAATTTTCTAGGCGCCATGGCTCAACTGATTCCCCACTTGGCACTATTCATCTCTCTCGTYGGAAGTGTAGCTGGAACATCCCTCACCCTTGTCTTCCCACCACTTATCGAGCTTTTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32112</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>246048</contig_pos>
        <strand></strand>
        <context>accaatctag[T/C]ccagtgccca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAG</left_flank>
        <right_flank>CCAGTGCCCAACAAGCCCACTTCACAAACTTTGAACGCCAATATCGATTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAAAAATTGCAGTTCCTAAATCATCTCTCGTTAGAGGAAATGTTCTCAAAATTTCTAAAACATTCCAGAATTCAAGCAACGAAAAAAATTCTTGTTATCTGAAATCTAGAGAATCCAAGCTATTTCAAAGTGTCCAGAGCTAGCCAAAAGTCGCATTTTTAAATTTTTTTTTGAACTGAAAATACTTATTTTTATTGAAACATGACAACCACACATGTATCATTTGATCGAAAAGAACAAAATGGTTTTCAAAGTTTTTGAAAAGGAAACAATTAATATTTTGAACAAAAAAGTACTGATTAGCCAGACTTTCGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATAGAAAGGGAAAATGGTTTTTTACCGGGGAAAAACCAACCAAAAACCCCATTGCTCTCCGCCTGATCAATAGTCGTGATGTGCCCCAGTCTAGTGATGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAGTCCAGTGCCCAACAAGCCCACTTCACAAACTTTGAACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGGCACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGGCATTGTCGCCGTCATCAGAATAGTAATTATAGGGCAAGAAATCAAATATTTGAGTTTAATTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTAGTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAATTGAATATTGAATGAGCTAGATAGAGTTTAAAAAAAATTTATTTGATCTCAATTTGTTAATTTTCAAAATCACATTTTAAGACACGTTCTCTAGATTTCCTCTTGCTACAGTAATCCTCGGCGTTGATAGCCTTGAGAACTATCCCATTACTTTTTTTGCAATTT</canonical>
            <polymorphic>ATCAAAAATTGCAGTTCCTAAATCATCTCTCGTTAGAGGAAATGTTCTCAAAATTTCTAAAACATTCCAGAATTCAAGCAACGAAAAAAATTCTTGTTATCTGAAATCTAGAGAATCCAAGCTATTTCAAAGTGTCCAGAGCTAGCCAAAAGTCGCATTTTTAAATTTTTTTTTGAACTGAAAATACTTATTTTTATTGAAACATGACAACCACACATGTATCATTTGATCGAAAAGAACAAAATGGTTTTCAAAGTTTTTGAAAAGGAAACAATTAATATTTTGAACAAAAAAGTACTGATTAGCCAGACTTTCGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATAGAAAGGGAAAATGGTTTTTTACCGGGGAAAAACCAACCAAAAACCCCATTGCTCTCCGCCTGATCAATAGTCGTGATGTGCCCCAGTCTAGTGATGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAGYCCAGTGCCCAACAAGCCCACTTCACAAACTTTGAACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGGCACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGGCATTGTCGCCGTCATCAGAATAGTAATTATAGGGCAAGAAATCAAATATTTGAGTTTAATTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTAGTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAATTGAATATTGAATGAGCTAGATAGAGTTTAAAAAAAATTTATTTGATCTCAATTTGTTAATTTTCAAAATCACATTTTAAGACACGTTCTCTAGATTTCCTCTTGCTACAGTAATCCTCGGCGTTGATAGCCTTGAGAACTATCCCATTACTTTTTTTGCAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGACAACCACACATGTATCA</pcr_primer_p1>
		<pcr_primer_p2>ATTATTCGACTTACGACATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>633</pcr_amplicon_size>
		<canonical_amplicon>ATGACAACCACACATGTATCATTTGATCGAAAAGAACAAAATGGTTTTCAAAGTTTTTGAAAAGGAAACAATTAATATTTTGAACAAAAAAGTACTGATTAGCCAGACTTTCGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATAGAAAGGGAAAATGGTTTTTTACCGGGGAAAAACCAACCAAAAACCCCATTGCTCTCCGCCTGATCAATAGTCGTGATGTGCCCCAGTCTAGTGATGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAGTCCAGTGCCCAACAAGCCCACTTCACAAACTTTGAACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGGCACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGGCATTGTCGCCGTCATCAGAATAGTAATTATAGGGCAAGAAATCAAATATTTGAGTTTAATTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTAGTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAAT</canonical_amplicon>
		<polymorphic_amplicon>ATGACAACCACACATGTATCATTTGATCGAAAAGAACAAAATGGTTTTCAAAGTTTTTGAAAAGGAAACAATTAATATTTTGAACAAAAAAGTACTGATTAGCCAGACTTTCGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATAGAAAGGGAAAATGGTTTTTTACCGGGGAAAAACCAACCAAAAACCCCATTGCTCTCCGCCTGATCAATAGTCGTGATGTGCCCCAGTCTAGTGATGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAGYCCAGTGCCCAACAAGCCCACTTCACAAACTTTGAACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGGCACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGGCATTGTCGCCGTCATCAGAATAGTAATTATAGGGCAAGAAATCAAATATTTGAGTTTAATTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTAGTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32113</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>246081</contig_pos>
        <strand></strand>
        <context>cacaaacttt[G/T]aacgccaata</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGACTAGACCAATCTAGTCCAGTGCCCAACAAGCCCACTTCACAAACTTT</left_flank>
        <right_flank>AACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAGGAAATGTTCTCAAAATTTCTAAAACATTCCAGAATTCAAGCAACGAAAAAAATTCTTGTTATCTGAAATCTAGAGAATCCAAGCTATTTCAAAGTGTCCAGAGCTAGCCAAAAGTCGCATTTTTAAATTTTTTTTTGAACTGAAAATACTTATTTTTATTGAAACATGACAACCACACATGTATCATTTGATCGAAAAGAACAAAATGGTTTTCAAAGTTTTTGAAAAGGAAACAATTAATATTTTGAACAAAAAAGTACTGATTAGCCAGACTTTCGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATAGAAAGGGAAAATGGTTTTTTACCGGGGAAAAACCAACCAAAAACCCCATTGCTCTCCGCCTGATCAATAGTCGTGATGTGCCCCAGTCTAGTGATGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAGTCCAGTGCCCAACAAGCCCACTTCACAAACTTTGAACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGGCACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGGCATTGTCGCCGTCATCAGAATAGTAATTATAGGGCAAGAAATCAAATATTTGAGTTTAATTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTAGTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAATTGAATATTGAATGAGCTAGATAGAGTTTAAAAAAAATTTATTTGATCTCAATTTGTTAATTTTCAAAATCACATTTTAAGACACGTTCTCTAGATTTCCTCTTGCTACAGTAATCCTCGGCGTTGATAGCCTTGAGAACTATCCCATTACTTTTTTTGCAATTTCGCTCTCCCACTCCCAATTTCTCACCATTCACA</canonical>
            <polymorphic>TAGAGGAAATGTTCTCAAAATTTCTAAAACATTCCAGAATTCAAGCAACGAAAAAAATTCTTGTTATCTGAAATCTAGAGAATCCAAGCTATTTCAAAGTGTCCAGAGCTAGCCAAAAGTCGCATTTTTAAATTTTTTTTTGAACTGAAAATACTTATTTTTATTGAAACATGACAACCACACATGTATCATTTGATCGAAAAGAACAAAATGGTTTTCAAAGTTTTTGAAAAGGAAACAATTAATATTTTGAACAAAAAAGTACTGATTAGCCAGACTTTCGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATAGAAAGGGAAAATGGTTTTTTACCGGGGAAAAACCAACCAAAAACCCCATTGCTCTCCGCCTGATCAATAGTCGTGATGTGCCCCAGTCTAGTGATGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAGTCCAGTGCCCAACAAGCCCACTTCACAAACTTTKAACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGGCACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGGCATTGTCGCCGTCATCAGAATAGTAATTATAGGGCAAGAAATCAAATATTTGAGTTTAATTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTAGTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAATTGAATATTGAATGAGCTAGATAGAGTTTAAAAAAAATTTATTTGATCTCAATTTGTTAATTTTCAAAATCACATTTTAAGACACGTTCTCTAGATTTCCTCTTGCTACAGTAATCCTCGGCGTTGATAGCCTTGAGAACTATCCCATTACTTTTTTTGCAATTTCGCTCTCCCACTCCCAATTTCTCACCATTCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGACAACCACACATGTATCA</pcr_primer_p1>
		<pcr_primer_p2>ATTATTCGACTTACGACATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>633</pcr_amplicon_size>
		<canonical_amplicon>ATGACAACCACACATGTATCATTTGATCGAAAAGAACAAAATGGTTTTCAAAGTTTTTGAAAAGGAAACAATTAATATTTTGAACAAAAAAGTACTGATTAGCCAGACTTTCGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATAGAAAGGGAAAATGGTTTTTTACCGGGGAAAAACCAACCAAAAACCCCATTGCTCTCCGCCTGATCAATAGTCGTGATGTGCCCCAGTCTAGTGATGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAGTCCAGTGCCCAACAAGCCCACTTCACAAACTTTGAACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGGCACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGGCATTGTCGCCGTCATCAGAATAGTAATTATAGGGCAAGAAATCAAATATTTGAGTTTAATTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTAGTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAAT</canonical_amplicon>
		<polymorphic_amplicon>ATGACAACCACACATGTATCATTTGATCGAAAAGAACAAAATGGTTTTCAAAGTTTTTGAAAAGGAAACAATTAATATTTTGAACAAAAAAGTACTGATTAGCCAGACTTTCGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATAGAAAGGGAAAATGGTTTTTTACCGGGGAAAAACCAACCAAAAACCCCATTGCTCTCCGCCTGATCAATAGTCGTGATGTGCCCCAGTCTAGTGATGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAGTCCAGTGCCCAACAAGCCCACTTCACAAACTTTKAACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGGCACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGGCATTGTCGCCGTCATCAGAATAGTAATTATAGGGCAAGAAATCAAATATTTGAGTTTAATTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTAGTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32114</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>246140</contig_pos>
        <strand></strand>
        <context>cggggcttgg[C/T]acacctgggt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGG</left_flank>
        <right_flank>ACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTGTTATCTGAAATCTAGAGAATCCAAGCTATTTCAAAGTGTCCAGAGCTAGCCAAAAGTCGCATTTTTAAATTTTTTTTTGAACTGAAAATACTTATTTTTATTGAAACATGACAACCACACATGTATCATTTGATCGAAAAGAACAAAATGGTTTTCAAAGTTTTTGAAAAGGAAACAATTAATATTTTGAACAAAAAAGTACTGATTAGCCAGACTTTCGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATAGAAAGGGAAAATGGTTTTTTACCGGGGAAAAACCAACCAAAAACCCCATTGCTCTCCGCCTGATCAATAGTCGTGATGTGCCCCAGTCTAGTGATGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAGTCCAGTGCCCAACAAGCCCACTTCACAAACTTTGAACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGGCACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGGCATTGTCGCCGTCATCAGAATAGTAATTATAGGGCAAGAAATCAAATATTTGAGTTTAATTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTAGTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAATTGAATATTGAATGAGCTAGATAGAGTTTAAAAAAAATTTATTTGATCTCAATTTGTTAATTTTCAAAATCACATTTTAAGACACGTTCTCTAGATTTCCTCTTGCTACAGTAATCCTCGGCGTTGATAGCCTTGAGAACTATCCCATTACTTTTTTTGCAATTTCGCTCTCCCACTCCCAATTTCTCACCATTCACATGTTGTGATATGACGAGAGAAAAGAATAAACCGCGCGAGAATTCTCTATCCATCTCTTG</canonical>
            <polymorphic>CTTGTTATCTGAAATCTAGAGAATCCAAGCTATTTCAAAGTGTCCAGAGCTAGCCAAAAGTCGCATTTTTAAATTTTTTTTTGAACTGAAAATACTTATTTTTATTGAAACATGACAACCACACATGTATCATTTGATCGAAAAGAACAAAATGGTTTTCAAAGTTTTTGAAAAGGAAACAATTAATATTTTGAACAAAAAAGTACTGATTAGCCAGACTTTCGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATAGAAAGGGAAAATGGTTTTTTACCGGGGAAAAACCAACCAAAAACCCCATTGCTCTCCGCCTGATCAATAGTCGTGATGTGCCCCAGTCTAGTGATGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAGTCCAGTGCCCAACAAGCCCACTTCACAAACTTTGAACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGGYACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGGCATTGTCGCCGTCATCAGAATAGTAATTATAGGGCAAGAAATCAAATATTTGAGTTTAATTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTAGTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAATTGAATATTGAATGAGCTAGATAGAGTTTAAAAAAAATTTATTTGATCTCAATTTGTTAATTTTCAAAATCACATTTTAAGACACGTTCTCTAGATTTCCTCTTGCTACAGTAATCCTCGGCGTTGATAGCCTTGAGAACTATCCCATTACTTTTTTTGCAATTTCGCTCTCCCACTCCCAATTTCTCACCATTCACATGTTGTGATATGACGAGAGAAAAGAATAAACCGCGCGAGAATTCTCTATCCATCTCTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>127 121 106 94 91 79 69 58 52 42 38 22 19 14 13 13 12 9 7 5 5 2 2</canonical_bands>
                <polymorphic_bands>127 121 106 94 91 79 71 58 52 42 38 22 19 14 13 13 12 9 7 5 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGACAACCACACATGTATCA</pcr_primer_p1>
		<pcr_primer_p2>ATTATTCGACTTACGACATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>633</pcr_amplicon_size>
		<canonical_amplicon>ATGACAACCACACATGTATCATTTGATCGAAAAGAACAAAATGGTTTTCAAAGTTTTTGAAAAGGAAACAATTAATATTTTGAACAAAAAAGTACTGATTAGCCAGACTTTCGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATAGAAAGGGAAAATGGTTTTTTACCGGGGAAAAACCAACCAAAAACCCCATTGCTCTCCGCCTGATCAATAGTCGTGATGTGCCCCAGTCTAGTGATGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAGTCCAGTGCCCAACAAGCCCACTTCACAAACTTTGAACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGGCACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGGCATTGTCGCCGTCATCAGAATAGTAATTATAGGGCAAGAAATCAAATATTTGAGTTTAATTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTAGTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAAT</canonical_amplicon>
		<polymorphic_amplicon>ATGACAACCACACATGTATCATTTGATCGAAAAGAACAAAATGGTTTTCAAAGTTTTTGAAAAGGAAACAATTAATATTTTGAACAAAAAAGTACTGATTAGCCAGACTTTCGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATAGAAAGGGAAAATGGTTTTTTACCGGGGAAAAACCAACCAAAAACCCCATTGCTCTCCGCCTGATCAATAGTCGTGATGTGCCCCAGTCTAGTGATGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAGTCCAGTGCCCAACAAGCCCACTTCACAAACTTTGAACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGGYACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGGCATTGTCGCCGTCATCAGAATAGTAATTATAGGGCAAGAAATCAAATATTTGAGTTTAATTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTAGTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32115</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>246191</contig_pos>
        <strand></strand>
        <context>acttttttgg[C/T]attgtcgccg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGG</left_flank>
        <right_flank>ATTGTCGCCGTCATCAGAATAGTAATTATAGGGCAAGAAATCAAATATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCAAAAGTCGCATTTTTAAATTTTTTTTTGAACTGAAAATACTTATTTTTATTGAAACATGACAACCACACATGTATCATTTGATCGAAAAGAACAAAATGGTTTTCAAAGTTTTTGAAAAGGAAACAATTAATATTTTGAACAAAAAAGTACTGATTAGCCAGACTTTCGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATAGAAAGGGAAAATGGTTTTTTACCGGGGAAAAACCAACCAAAAACCCCATTGCTCTCCGCCTGATCAATAGTCGTGATGTGCCCCAGTCTAGTGATGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAGTCCAGTGCCCAACAAGCCCACTTCACAAACTTTGAACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGGCACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGGCATTGTCGCCGTCATCAGAATAGTAATTATAGGGCAAGAAATCAAATATTTGAGTTTAATTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTAGTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAATTGAATATTGAATGAGCTAGATAGAGTTTAAAAAAAATTTATTTGATCTCAATTTGTTAATTTTCAAAATCACATTTTAAGACACGTTCTCTAGATTTCCTCTTGCTACAGTAATCCTCGGCGTTGATAGCCTTGAGAACTATCCCATTACTTTTTTTGCAATTTCGCTCTCCCACTCCCAATTTCTCACCATTCACATGTTGTGATATGACGAGAGAAAAGAATAAACCGCGCGAGAATTCTCTATCCATCTCTTGTCTTGTCAATTTCTCTTAGTCATCCTATCAATTTCATCTGCTACCTCCTCC</canonical>
            <polymorphic>AGCCAAAAGTCGCATTTTTAAATTTTTTTTTGAACTGAAAATACTTATTTTTATTGAAACATGACAACCACACATGTATCATTTGATCGAAAAGAACAAAATGGTTTTCAAAGTTTTTGAAAAGGAAACAATTAATATTTTGAACAAAAAAGTACTGATTAGCCAGACTTTCGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATAGAAAGGGAAAATGGTTTTTTACCGGGGAAAAACCAACCAAAAACCCCATTGCTCTCCGCCTGATCAATAGTCGTGATGTGCCCCAGTCTAGTGATGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAGTCCAGTGCCCAACAAGCCCACTTCACAAACTTTGAACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGGCACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGGYATTGTCGCCGTCATCAGAATAGTAATTATAGGGCAAGAAATCAAATATTTGAGTTTAATTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTAGTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAATTGAATATTGAATGAGCTAGATAGAGTTTAAAAAAAATTTATTTGATCTCAATTTGTTAATTTTCAAAATCACATTTTAAGACACGTTCTCTAGATTTCCTCTTGCTACAGTAATCCTCGGCGTTGATAGCCTTGAGAACTATCCCATTACTTTTTTTGCAATTTCGCTCTCCCACTCCCAATTTCTCACCATTCACATGTTGTGATATGACGAGAGAAAAGAATAAACCGCGCGAGAATTCTCTATCCATCTCTTGTCTTGTCAATTTCTCTTAGTCATCCTATCAATTTCATCTGCTACCTCCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGACAACCACACATGTATCA</pcr_primer_p1>
		<pcr_primer_p2>ATTATTCGACTTACGACATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>633</pcr_amplicon_size>
		<canonical_amplicon>ATGACAACCACACATGTATCATTTGATCGAAAAGAACAAAATGGTTTTCAAAGTTTTTGAAAAGGAAACAATTAATATTTTGAACAAAAAAGTACTGATTAGCCAGACTTTCGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATAGAAAGGGAAAATGGTTTTTTACCGGGGAAAAACCAACCAAAAACCCCATTGCTCTCCGCCTGATCAATAGTCGTGATGTGCCCCAGTCTAGTGATGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAGTCCAGTGCCCAACAAGCCCACTTCACAAACTTTGAACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGGCACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGGCATTGTCGCCGTCATCAGAATAGTAATTATAGGGCAAGAAATCAAATATTTGAGTTTAATTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTAGTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAAT</canonical_amplicon>
		<polymorphic_amplicon>ATGACAACCACACATGTATCATTTGATCGAAAAGAACAAAATGGTTTTCAAAGTTTTTGAAAAGGAAACAATTAATATTTTGAACAAAAAAGTACTGATTAGCCAGACTTTCGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATAGAAAGGGAAAATGGTTTTTTACCGGGGAAAAACCAACCAAAAACCCCATTGCTCTCCGCCTGATCAATAGTCGTGATGTGCCCCAGTCTAGTGATGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAGTCCAGTGCCCAACAAGCCCACTTCACAAACTTTGAACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGGCACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGGYATTGTCGCCGTCATCAGAATAGTAATTATAGGGCAAGAAATCAAATATTTGAGTTTAATTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTAGTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32116</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>246223</contig_pos>
        <strand></strand>
        <context>gtaattatag[G/A]gcaagaaatc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTTTCCCCACTTTTTTGGCATTGTCGCCGTCATCAGAATAGTAATTATAG</left_flank>
        <right_flank>GCAAGAAATCAAATATTTGAGTTTAATTTCGACATGAATGGGTCTTAAGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTGAAAATACTTATTTTTATTGAAACATGACAACCACACATGTATCATTTGATCGAAAAGAACAAAATGGTTTTCAAAGTTTTTGAAAAGGAAACAATTAATATTTTGAACAAAAAAGTACTGATTAGCCAGACTTTCGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATAGAAAGGGAAAATGGTTTTTTACCGGGGAAAAACCAACCAAAAACCCCATTGCTCTCCGCCTGATCAATAGTCGTGATGTGCCCCAGTCTAGTGATGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAGTCCAGTGCCCAACAAGCCCACTTCACAAACTTTGAACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGGCACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGGCATTGTCGCCGTCATCAGAATAGTAATTATAGGGCAAGAAATCAAATATTTGAGTTTAATTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTAGTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAATTGAATATTGAATGAGCTAGATAGAGTTTAAAAAAAATTTATTTGATCTCAATTTGTTAATTTTCAAAATCACATTTTAAGACACGTTCTCTAGATTTCCTCTTGCTACAGTAATCCTCGGCGTTGATAGCCTTGAGAACTATCCCATTACTTTTTTTGCAATTTCGCTCTCCCACTCCCAATTTCTCACCATTCACATGTTGTGATATGACGAGAGAAAAGAATAAACCGCGCGAGAATTCTCTATCCATCTCTTGTCTTGTCAATTTCTCTTAGTCATCCTATCAATTTCATCTGCTACCTCCTCCTACTTTCCTTCTTCTGTTTCTTCTCTATTTAC</canonical>
            <polymorphic>AACTGAAAATACTTATTTTTATTGAAACATGACAACCACACATGTATCATTTGATCGAAAAGAACAAAATGGTTTTCAAAGTTTTTGAAAAGGAAACAATTAATATTTTGAACAAAAAAGTACTGATTAGCCAGACTTTCGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATAGAAAGGGAAAATGGTTTTTTACCGGGGAAAAACCAACCAAAAACCCCATTGCTCTCCGCCTGATCAATAGTCGTGATGTGCCCCAGTCTAGTGATGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAGTCCAGTGCCCAACAAGCCCACTTCACAAACTTTGAACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGGCACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGGCATTGTCGCCGTCATCAGAATAGTAATTATAGRGCAAGAAATCAAATATTTGAGTTTAATTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTAGTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAATTGAATATTGAATGAGCTAGATAGAGTTTAAAAAAAATTTATTTGATCTCAATTTGTTAATTTTCAAAATCACATTTTAAGACACGTTCTCTAGATTTCCTCTTGCTACAGTAATCCTCGGCGTTGATAGCCTTGAGAACTATCCCATTACTTTTTTTGCAATTTCGCTCTCCCACTCCCAATTTCTCACCATTCACATGTTGTGATATGACGAGAGAAAAGAATAAACCGCGCGAGAATTCTCTATCCATCTCTTGTCTTGTCAATTTCTCTTAGTCATCCTATCAATTTCATCTGCTACCTCCTCCTACTTTCCTTCTTCTGTTTCTTCTCTATTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGACAACCACACATGTATCA</pcr_primer_p1>
		<pcr_primer_p2>ATTATTCGACTTACGACATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>633</pcr_amplicon_size>
		<canonical_amplicon>ATGACAACCACACATGTATCATTTGATCGAAAAGAACAAAATGGTTTTCAAAGTTTTTGAAAAGGAAACAATTAATATTTTGAACAAAAAAGTACTGATTAGCCAGACTTTCGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATAGAAAGGGAAAATGGTTTTTTACCGGGGAAAAACCAACCAAAAACCCCATTGCTCTCCGCCTGATCAATAGTCGTGATGTGCCCCAGTCTAGTGATGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAGTCCAGTGCCCAACAAGCCCACTTCACAAACTTTGAACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGGCACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGGCATTGTCGCCGTCATCAGAATAGTAATTATAGGGCAAGAAATCAAATATTTGAGTTTAATTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTAGTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAAT</canonical_amplicon>
		<polymorphic_amplicon>ATGACAACCACACATGTATCATTTGATCGAAAAGAACAAAATGGTTTTCAAAGTTTTTGAAAAGGAAACAATTAATATTTTGAACAAAAAAGTACTGATTAGCCAGACTTTCGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATAGAAAGGGAAAATGGTTTTTTACCGGGGAAAAACCAACCAAAAACCCCATTGCTCTCCGCCTGATCAATAGTCGTGATGTGCCCCAGTCTAGTGATGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAGTCCAGTGCCCAACAAGCCCACTTCACAAACTTTGAACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGGCACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGGCATTGTCGCCGTCATCAGAATAGTAATTATAGRGCAAGAAATCAAATATTTGAGTTTAATTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTAGTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32117</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>246249</contig_pos>
        <strand></strand>
        <context>tttgagttta[A/T]tttcgacatg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCGTCATCAGAATAGTAATTATAGGGCAAGAAATCAAATATTTGAGTTTA</left_flank>
        <right_flank>TTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATGACAACCACACATGTATCATTTGATCGAAAAGAACAAAATGGTTTTCAAAGTTTTTGAAAAGGAAACAATTAATATTTTGAACAAAAAAGTACTGATTAGCCAGACTTTCGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATAGAAAGGGAAAATGGTTTTTTACCGGGGAAAAACCAACCAAAAACCCCATTGCTCTCCGCCTGATCAATAGTCGTGATGTGCCCCAGTCTAGTGATGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAGTCCAGTGCCCAACAAGCCCACTTCACAAACTTTGAACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGGCACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGGCATTGTCGCCGTCATCAGAATAGTAATTATAGGGCAAGAAATCAAATATTTGAGTTTAATTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTAGTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAATTGAATATTGAATGAGCTAGATAGAGTTTAAAAAAAATTTATTTGATCTCAATTTGTTAATTTTCAAAATCACATTTTAAGACACGTTCTCTAGATTTCCTCTTGCTACAGTAATCCTCGGCGTTGATAGCCTTGAGAACTATCCCATTACTTTTTTTGCAATTTCGCTCTCCCACTCCCAATTTCTCACCATTCACATGTTGTGATATGACGAGAGAAAAGAATAAACCGCGCGAGAATTCTCTATCCATCTCTTGTCTTGTCAATTTCTCTTAGTCATCCTATCAATTTCATCTGCTACCTCCTCCTACTTTCCTTCTTCTGTTTCTTCTCTATTTACAGAAAAAAGAACAGAACACTCTTAGA</canonical>
            <polymorphic>ACATGACAACCACACATGTATCATTTGATCGAAAAGAACAAAATGGTTTTCAAAGTTTTTGAAAAGGAAACAATTAATATTTTGAACAAAAAAGTACTGATTAGCCAGACTTTCGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATAGAAAGGGAAAATGGTTTTTTACCGGGGAAAAACCAACCAAAAACCCCATTGCTCTCCGCCTGATCAATAGTCGTGATGTGCCCCAGTCTAGTGATGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAGTCCAGTGCCCAACAAGCCCACTTCACAAACTTTGAACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGGCACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGGCATTGTCGCCGTCATCAGAATAGTAATTATAGGGCAAGAAATCAAATATTTGAGTTTAWTTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTAGTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAATTGAATATTGAATGAGCTAGATAGAGTTTAAAAAAAATTTATTTGATCTCAATTTGTTAATTTTCAAAATCACATTTTAAGACACGTTCTCTAGATTTCCTCTTGCTACAGTAATCCTCGGCGTTGATAGCCTTGAGAACTATCCCATTACTTTTTTTGCAATTTCGCTCTCCCACTCCCAATTTCTCACCATTCACATGTTGTGATATGACGAGAGAAAAGAATAAACCGCGCGAGAATTCTCTATCCATCTCTTGTCTTGTCAATTTCTCTTAGTCATCCTATCAATTTCATCTGCTACCTCCTCCTACTTTCCTTCTTCTGTTTCTTCTCTATTTACAGAAAAAAGAACAGAACACTCTTAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>289 239 184 89 74 54 29 22 20</canonical_bands>
                <polymorphic_bands>289 261 184 89 74 54 29 20</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>394 102 95 80 71 57 39 37 33 27 22 20 15 8</canonical_bands>
                <polymorphic_bands>394 128 102 80 71 57 39 37 27 22 20 15 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGACAACCACACATGTATCA</pcr_primer_p1>
		<pcr_primer_p2>ATTATTCGACTTACGACATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>633</pcr_amplicon_size>
		<canonical_amplicon>ATGACAACCACACATGTATCATTTGATCGAAAAGAACAAAATGGTTTTCAAAGTTTTTGAAAAGGAAACAATTAATATTTTGAACAAAAAAGTACTGATTAGCCAGACTTTCGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATAGAAAGGGAAAATGGTTTTTTACCGGGGAAAAACCAACCAAAAACCCCATTGCTCTCCGCCTGATCAATAGTCGTGATGTGCCCCAGTCTAGTGATGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAGTCCAGTGCCCAACAAGCCCACTTCACAAACTTTGAACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGGCACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGGCATTGTCGCCGTCATCAGAATAGTAATTATAGGGCAAGAAATCAAATATTTGAGTTTAATTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTAGTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAAT</canonical_amplicon>
		<polymorphic_amplicon>ATGACAACCACACATGTATCATTTGATCGAAAAGAACAAAATGGTTTTCAAAGTTTTTGAAAAGGAAACAATTAATATTTTGAACAAAAAAGTACTGATTAGCCAGACTTTCGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATAGAAAGGGAAAATGGTTTTTTACCGGGGAAAAACCAACCAAAAACCCCATTGCTCTCCGCCTGATCAATAGTCGTGATGTGCCCCAGTCTAGTGATGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAGTCCAGTGCCCAACAAGCCCACTTCACAAACTTTGAACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGGCACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGGCATTGTCGCCGTCATCAGAATAGTAATTATAGGGCAAGAAATCAAATATTTGAGTTTAWTTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTAGTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32118</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>246317</contig_pos>
        <strand>+</strand>
        <context>gtgacaagta[A/T]ttttttaagt</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTA</left_flank>
        <right_flank>TTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAATTAATATTTTGAACAAAAAAGTACTGATTAGCCAGACTTTCGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATAGAAAGGGAAAATGGTTTTTTACCGGGGAAAAACCAACCAAAAACCCCATTGCTCTCCGCCTGATCAATAGTCGTGATGTGCCCCAGTCTAGTGATGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAGTCCAGTGCCCAACAAGCCCACTTCACAAACTTTGAACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGGCACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGGCATTGTCGCCGTCATCAGAATAGTAATTATAGGGCAAGAAATCAAATATTTGAGTTTAATTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTAGTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAATTGAATATTGAATGAGCTAGATAGAGTTTAAAAAAAATTTATTTGATCTCAATTTGTTAATTTTCAAAATCACATTTTAAGACACGTTCTCTAGATTTCCTCTTGCTACAGTAATCCTCGGCGTTGATAGCCTTGAGAACTATCCCATTACTTTTTTTGCAATTTCGCTCTCCCACTCCCAATTTCTCACCATTCACATGTTGTGATATGACGAGAGAAAAGAATAAACCGCGCGAGAATTCTCTATCCATCTCTTGTCTTGTCAATTTCTCTTAGTCATCCTATCAATTTCATCTGCTACCTCCTCCTACTTTCCTTCTTCTGTTTCTTCTCTATTTACAGAAAAAAGAACAGAACACTCTTAGATTCTAATATATCGAGATTATCATCTTATCATCCAGTTCACACTTCTCTTTACTTTTCTAAAGTTTACT</canonical>
            <polymorphic>AACAATTAATATTTTGAACAAAAAAGTACTGATTAGCCAGACTTTCGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATAGAAAGGGAAAATGGTTTTTTACCGGGGAAAAACCAACCAAAAACCCCATTGCTCTCCGCCTGATCAATAGTCGTGATGTGCCCCAGTCTAGTGATGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAGTCCAGTGCCCAACAAGCCCACTTCACAAACTTTGAACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGGCACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGGCATTGTCGCCGTCATCAGAATAGTAATTATAGGGCAAGAAATCAAATATTTGAGTTTAATTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTAWTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAATTGAATATTGAATGAGCTAGATAGAGTTTAAAAAAAATTTATTTGATCTCAATTTGTTAATTTTCAAAATCACATTTTAAGACACGTTCTCTAGATTTCCTCTTGCTACAGTAATCCTCGGCGTTGATAGCCTTGAGAACTATCCCATTACTTTTTTTGCAATTTCGCTCTCCCACTCCCAATTTCTCACCATTCACATGTTGTGATATGACGAGAGAAAAGAATAAACCGCGCGAGAATTCTCTATCCATCTCTTGTCTTGTCAATTTCTCTTAGTCATCCTATCAATTTCATCTGCTACCTCCTCCTACTTTCCTTCTTCTGTTTCTTCTCTATTTACAGAAAAAAGAACAGAACACTCTTAGATTCTAATATATCGAGATTATCATCTTATCATCCAGTTCACACTTCTCTTTACTTTTCTAAAGTTTACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGACAACCACACATGTATCA</pcr_primer_p1>
		<pcr_primer_p2>ATTATTCGACTTACGACATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>633</pcr_amplicon_size>
		<canonical_amplicon>AGTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAAT</canonical_amplicon>
		<polymorphic_amplicon>AWTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32119</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>246338</contig_pos>
        <strand></strand>
        <context>gaacaatgaa[G/A]CCTAAATTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAATGAAATCCATCAAAAAGTGACAAGTAGTTTTTTAAGTGAACAATGAA</left_flank>
        <right_flank>CCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAATTGAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAGTACTGATTAGCCAGACTTTCGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATAGAAAGGGAAAATGGTTTTTTACCGGGGAAAAACCAACCAAAAACCCCATTGCTCTCCGCCTGATCAATAGTCGTGATGTGCCCCAGTCTAGTGATGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAGTCCAGTGCCCAACAAGCCCACTTCACAAACTTTGAACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGGCACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGGCATTGTCGCCGTCATCAGAATAGTAATTATAGGGCAAGAAATCAAATATTTGAGTTTAATTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTAGTTTTTTAAGTGAACAATGAAGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAATTGAATATTGAATGAGCTAGATAGAGTTTAAAAAAAATTTATTTGATCTCAATTTGTTAATTTTCAAAATCACATTTTAAGACACGTTCTCTAGATTTCCTCTTGCTACAGTAATCCTCGGCGTTGATAGCCTTGAGAACTATCCCATTACTTTTTTTGCAATTTCGCTCTCCCACTCCCAATTTCTCACCATTCACATGTTGTGATATGACGAGAGAAAAGAATAAACCGCGCGAGAATTCTCTATCCATCTCTTGTCTTGTCAATTTCTCTTAGTCATCCTATCAATTTCATCTGCTACCTCCTCCTACTTTCCTTCTTCTGTTTCTTCTCTATTTACAGAAAAAAGAACAGAACACTCTTAGATTCTAATATATCGAGATTATCATCTTATCATCCAGTTCACACTTCTCTTTACTTTTCTAAAGTTTACTTTTCCCATGAGTATTGGAATT</canonical>
            <polymorphic>AAAAGTACTGATTAGCCAGACTTTCGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATAGAAAGGGAAAATGGTTTTTTACCGGGGAAAAACCAACCAAAAACCCCATTGCTCTCCGCCTGATCAATAGTCGTGATGTGCCCCAGTCTAGTGATGTAGTCGTTTAACAAACCGTAGCCCGCATGACCGACTAGACCAATCTAGTCCAGTGCCCAACAAGCCCACTTCACAAACTTTGAACGCCAATATCGATTTTTCTTGCCCTTATATATGCGAGAAAAAGGGGCGGGGCTTGGCACACCTGGGTTTGGCGGAAACTTCCCCCTCCCCTTTCCCCACTTTTTTGGCATTGTCGCCGTCATCAGAATAGTAATTATAGGGCAAGAAATCAAATATTTGAGTTTAATTTCGACATGAATGGGTCTTAAGATAAAGACAAAACCACAATGAAATCCATCAAAAAGTGACAAGTAGTTTTTTAAGTGAACAATGAARCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAATTGAATATTGAATGAGCTAGATAGAGTTTAAAAAAAATTTATTTGATCTCAATTTGTTAATTTTCAAAATCACATTTTAAGACACGTTCTCTAGATTTCCTCTTGCTACAGTAATCCTCGGCGTTGATAGCCTTGAGAACTATCCCATTACTTTTTTTGCAATTTCGCTCTCCCACTCCCAATTTCTCACCATTCACATGTTGTGATATGACGAGAGAAAAGAATAAACCGCGCGAGAATTCTCTATCCATCTCTTGTCTTGTCAATTTCTCTTAGTCATCCTATCAATTTCATCTGCTACCTCCTCCTACTTTCCTTCTTCTGTTTCTTCTCTATTTACAGAAAAAAGAACAGAACACTCTTAGATTCTAATATATCGAGATTATCATCTTATCATCCAGTTCACACTTCTCTTTACTTTTCTAAAGTTTACTTTTCCCATGAGTATTGGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>325 204 128 114 71 61 43 39 15</canonical_bands>
                <polymorphic_bands>325 265 128 114 71 43 39 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGACAACCACACATGTATCA</pcr_primer_p1>
		<pcr_primer_p2>TTTTAAACTCTATCTAGCTCATTCAA</pcr_primer_p2>
		<pcr_amplicon_size>665</pcr_amplicon_size>
		<canonical_amplicon>AGCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAATTGAATATTGAATGAGCTAGATAGAGTTTAAAA</canonical_amplicon>
		<polymorphic_amplicon>ARCCTAAATTAGAAAAATACATTTTCAAAATGTCGTAAGTCGAATAATTGAATATTGAATGAGCTAGATAGAGTTTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32120</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>247795</contig_pos>
        <strand>+</strand>
        <context>AATACTTGCT[C/T]GCTATTTKTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATATCATAACAGTGAAGATTTAGCAGTTTTCCATTTATTGAATACTTGCT</left_flank>
        <right_flank>GCTATTTTTTCAGCTGAAATTTGATTTTTTTCAGCCGAATTCTTCGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGATTCCTGTCAAAGGTATAAAAAAGTTGTTAACCGGTAAATTATTTATCATAATTTCAGAAATATTTTGTCTGTTGACCACTTTTTGATATCTTGCATAGGAGTTGAGATAATTGAGCTACAACTGGACAGGGAATTTCTATTACACGTTTTACGATAGGTCTTGAACTCTTACTTCATATGTACTGGTCGCTCCCGGACATTTCGAAACCGGACATTTTGCAGCCAGACATTTCGCAGCCAGACATTTCGCAGCCTCTGATAACGTCAGAAAATCAGAATTCCAAGTTCTTCGATTTTGAAAAAAGTTTATTTTAATGAAAAAATAGCAAGCAAGTATTCAATCAATTGAAAAATGCTAAATCTTCATTGTTATTCAGAATTTCTTTTTAAAATATAAGATTTTAGAAAGTTGGAATTCTAGAAGAAAAAAAAGAAATTTTTAAAAATATCATAACAGTGAAGATTTAGCAGTTTTCCATTTATTGAATACTTGCTCGCTATTTTTTCAGCTGAAATTTGATTTTTTTCAGCCGAATTCTTCGAAAATTCAATTTCTGACATTAAAATACTTTTTTCAAAACCGAAGAACTTGGAATTCTGATTTTCTGACGTTTTTAGAGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCCGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCCGGATACGAAATGTCGCGGCTGTGAAATGTCCGGATACGAAATGTCCGGGAGCCGTACTGGTTGAGTCTTAGACGGGAACAACTCCATTTTTTTTTCAAAAATTCAGATATTCAGGGTGTCGAACAACGCCGTCTGTGTTGGCTATGACTGAAGATGGGGATTGTCTTATAGGACAACATGCAAAAGACGTGATCACAAAAGCAACAAGTTCACTTTTTGGTTAGCAACACAGACAAAAATAAATTCTCCTATTCTTTTTTAGATGTAAAACG</canonical>
            <polymorphic>TCGATTCCTGTCAAAGGTATAAAAAAGTTGTTAACCGGTAAATTATTTATCATAATTTCAGAAATATTTTGTCTGTTGACCACTTTTTGATATCTTGCATAGGAGTTGAGATAATTGAGCTACAACTGGACAGGGAATTTCTATTACACGTTTTACGATAGGTCTTGAACTCTTACTTCATATGTACTGGTCGCTCCCGGACATTTCGAAACCGGACATTTTGCAGCCAGACATTTCGCAGCCAGACATTTCGCAGCCTCTGATAACGTCAGAAAATCAGAATTCCAAGTTCTTCGATTTTGAAAAAAGTTTATTTTAATGAAAAAATAGCAAGCAAGTATTCAATCAATTGAAAAATGCTAAATCTTCATTGTTATTCAGAATTTCTTTTTAAAATATAAGATTTTAGAAAGTTGGAATTCTAGAAGAAAAAAAAGAAATTTTTAAAAATATCATAACAGTGAAGATTTAGCAGTTTTCCATTTATTGAATACTTGCTYGCTATTTTTTCAGCTGAAATTTGATTTTTTTCAGCCGAATTCTTCGAAAATTCAATTTCTGACATTAAAATACTTTTTTCAAAACCGAAGAACTTGGAATTCTGATTTTCTGACGTTTTTAGAGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCCGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCCGGATACGAAATGTCGCGGCTGTGAAATGTCCGGATACGAAATGTCCGGGAGCCGTACTGGTTGAGTCTTAGACGGGAACAACTCCATTTTTTTTTCAAAAATTCAGATATTCAGGGTGTCGAACAACGCCGTCTGTGTTGGCTATGACTGAAGATGGGGATTGTCTTATAGGACAACATGCAAAAGACGTGATCACAAAAGCAACAAGTTCACTTTTTGGTTAGCAACACAGACAAAAATAAATTCTCCTATTCTTTTTTAGATGTAAAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTAAATCTTCATTGTTATTCA</pcr_primer_p1>
		<pcr_primer_p2>AAAATCAGAATTCCAAGTTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TGCTAAATCTTCATTGTTATTCAGAATTTCTTTTTAAAATATAAGATTTTAGAAAGTTGGAATTCTAGAAGAAAAAAAAGAAATTTTTAAAAATATCATAACAGTGAAGATTTAGCAGTTTTCCATTTATTGAATACTTGCTCGCTATTTTTTCAGCTGAAATTTGATTTTTTTCAGCCGAATTCTTCGAAAATTCAATTTCTGACATTAAAATACTTTTTTCAAAACCGAAGAACTTGGAATTCTGATTTT</canonical_amplicon>
		<polymorphic_amplicon>TGCTAAATCTTCATTGTTATTCAGAATTTCTTTTTAAAATATAAGATTTTAGAAAGTTGGAATTCTAGAAGAAAAAAAAGAAATTTTTAAAAATATCATAACAGTGAAGATTTAGCAGTTTTCCATTTATTGAATACTTGCTYGCTATTTTTTCAGCTGAAATTTGATTTTTTTCAGCCGAATTCTTCGAAAATTCAATTTCTGACATTAAAATACTTTTTTCAAAACCGAAGAACTTGGAATTCTGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32121</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>247803</contig_pos>
        <strand>+</strand>
        <context>CTYGCTATTT[G/T]TTCAGCTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACAGTGAAGATTTAGCAGTTTTCCATTTATTGAATACTTGCTCGCTATTT</left_flank>
        <right_flank>TTCAGCTGAAATTTGATTTTTTTCAGCCGAATTCTTCGAAAATTCAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCAAAGGTATAAAAAAGTTGTTAACCGGTAAATTATTTATCATAATTTCAGAAATATTTTGTCTGTTGACCACTTTTTGATATCTTGCATAGGAGTTGAGATAATTGAGCTACAACTGGACAGGGAATTTCTATTACACGTTTTACGATAGGTCTTGAACTCTTACTTCATATGTACTGGTCGCTCCCGGACATTTCGAAACCGGACATTTTGCAGCCAGACATTTCGCAGCCAGACATTTCGCAGCCTCTGATAACGTCAGAAAATCAGAATTCCAAGTTCTTCGATTTTGAAAAAAGTTTATTTTAATGAAAAAATAGCAAGCAAGTATTCAATCAATTGAAAAATGCTAAATCTTCATTGTTATTCAGAATTTCTTTTTAAAATATAAGATTTTAGAAAGTTGGAATTCTAGAAGAAAAAAAAGAAATTTTTAAAAATATCATAACAGTGAAGATTTAGCAGTTTTCCATTTATTGAATACTTGCTCGCTATTTTTTCAGCTGAAATTTGATTTTTTTCAGCCGAATTCTTCGAAAATTCAATTTCTGACATTAAAATACTTTTTTCAAAACCGAAGAACTTGGAATTCTGATTTTCTGACGTTTTTAGAGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCCGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCCGGATACGAAATGTCGCGGCTGTGAAATGTCCGGATACGAAATGTCCGGGAGCCGTACTGGTTGAGTCTTAGACGGGAACAACTCCATTTTTTTTTCAAAAATTCAGATATTCAGGGTGTCGAACAACGCCGTCTGTGTTGGCTATGACTGAAGATGGGGATTGTCTTATAGGACAACATGCAAAAGACGTGATCACAAAAGCAACAAGTTCACTTTTTGGTTAGCAACACAGACAAAAATAAATTCTCCTATTCTTTTTTAGATGTAAAACGAATAATCG</canonical>
            <polymorphic>TGTCAAAGGTATAAAAAAGTTGTTAACCGGTAAATTATTTATCATAATTTCAGAAATATTTTGTCTGTTGACCACTTTTTGATATCTTGCATAGGAGTTGAGATAATTGAGCTACAACTGGACAGGGAATTTCTATTACACGTTTTACGATAGGTCTTGAACTCTTACTTCATATGTACTGGTCGCTCCCGGACATTTCGAAACCGGACATTTTGCAGCCAGACATTTCGCAGCCAGACATTTCGCAGCCTCTGATAACGTCAGAAAATCAGAATTCCAAGTTCTTCGATTTTGAAAAAAGTTTATTTTAATGAAAAAATAGCAAGCAAGTATTCAATCAATTGAAAAATGCTAAATCTTCATTGTTATTCAGAATTTCTTTTTAAAATATAAGATTTTAGAAAGTTGGAATTCTAGAAGAAAAAAAAGAAATTTTTAAAAATATCATAACAGTGAAGATTTAGCAGTTTTCCATTTATTGAATACTTGCTCGCTATTTKTTCAGCTGAAATTTGATTTTTTTCAGCCGAATTCTTCGAAAATTCAATTTCTGACATTAAAATACTTTTTTCAAAACCGAAGAACTTGGAATTCTGATTTTCTGACGTTTTTAGAGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCCGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCCGGATACGAAATGTCGCGGCTGTGAAATGTCCGGATACGAAATGTCCGGGAGCCGTACTGGTTGAGTCTTAGACGGGAACAACTCCATTTTTTTTTCAAAAATTCAGATATTCAGGGTGTCGAACAACGCCGTCTGTGTTGGCTATGACTGAAGATGGGGATTGTCTTATAGGACAACATGCAAAAGACGTGATCACAAAAGCAACAAGTTCACTTTTTGGTTAGCAACACAGACAAAAATAAATTCTCCTATTCTTTTTTAGATGTAAAACGAATAATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTAAATCTTCATTGTTATTCA</pcr_primer_p1>
		<pcr_primer_p2>AAAATCAGAATTCCAAGTTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TGCTAAATCTTCATTGTTATTCAGAATTTCTTTTTAAAATATAAGATTTTAGAAAGTTGGAATTCTAGAAGAAAAAAAAGAAATTTTTAAAAATATCATAACAGTGAAGATTTAGCAGTTTTCCATTTATTGAATACTTGCTCGCTATTTTTTCAGCTGAAATTTGATTTTTTTCAGCCGAATTCTTCGAAAATTCAATTTCTGACATTAAAATACTTTTTTCAAAACCGAAGAACTTGGAATTCTGATTTT</canonical_amplicon>
		<polymorphic_amplicon>TGCTAAATCTTCATTGTTATTCAGAATTTCTTTTTAAAATATAAGATTTTAGAAAGTTGGAATTCTAGAAGAAAAAAAAGAAATTTTTAAAAATATCATAACAGTGAAGATTTAGCAGTTTTCCATTTATTGAATACTTGCTCGCTATTTKTTCAGCTGAAATTTGATTTTTTTCAGCCGAATTCTTCGAAAATTCAATTTCTGACATTAAAATACTTTTTTCAAAACCGAAGAACTTGGAATTCTGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32122</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>248067</contig_pos>
        <strand>+</strand>
        <context>aTACGAAATG[C/T]CCGGGAGCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGTCCGGATACGAAATGTCGCGGCTGTGAAATGTCCGGATACGAAATG</left_flank>
        <right_flank>CCGGGAGCCGTACTGGTTGAGTCTTAGACGGGAACAACTCCATTTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATCAGAATTCCAAGTTCTTCGATTTTGAAAAAAGTTTATTTTAATGAAAAAATAGCAAGCAAGTATTCAATCAATTGAAAAATGCTAAATCTTCATTGTTATTCAGAATTTCTTTTTAAAATATAAGATTTTAGAAAGTTGGAATTCTAGAAGAAAAAAAAGAAATTTTTAAAAATATCATAACAGTGAAGATTTAGCAGTTTTCCATTTATTGAATACTTGCTCGCTATTTTTTCAGCTGAAATTTGATTTTTTTCAGCCGAATTCTTCGAAAATTCAATTTCTGACATTAAAATACTTTTTTCAAAACCGAAGAACTTGGAATTCTGATTTTCTGACGTTTTTAGAGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCCGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCCGGATACGAAATGTCGCGGCTGTGAAATGTCCGGATACGAAATGTCCGGGAGCCGTACTGGTTGAGTCTTAGACGGGAACAACTCCATTTTTTTTTCAAAAATTCAGATATTCAGGGTGTCGAACAACGCCGTCTGTGTTGGCTATGACTGAAGATGGGGATTGTCTTATAGGACAACATGCAAAAGACGTGATCACAAAAGCAACAAGTTCACTTTTTGGTTAGCAACACAGACAAAAATAAATTCTCCTATTCTTTTTTAGATGTAAAACGAATAATCGGCAGACGGTTTGATGACGTTCTCCTTCAACGAGACATGCCTCTTTGGCCGTTTCGGGTTGAGAAGGATACCGATGGAACTCCCTATCTTCAAATTCAAAATGACGCTAAGAAAGTCAAATTCTCAGCTGTTACAGTATCCTCCTTGATTCTGAAATGTCTCAAAGAGAATGCGGAGAGAAAGTTAGGTGTTGAAGTGAAAAGTGCAGTGATTACGGTACCTGCTTATTTCAATGCCACGCAACGGAGAGCAACGGAAGAAGCGG</canonical>
            <polymorphic>AAAATCAGAATTCCAAGTTCTTCGATTTTGAAAAAAGTTTATTTTAATGAAAAAATAGCAAGCAAGTATTCAATCAATTGAAAAATGCTAAATCTTCATTGTTATTCAGAATTTCTTTTTAAAATATAAGATTTTAGAAAGTTGGAATTCTAGAAGAAAAAAAAGAAATTTTTAAAAATATCATAACAGTGAAGATTTAGCAGTTTTCCATTTATTGAATACTTGCTCGCTATTTTTTCAGCTGAAATTTGATTTTTTTCAGCCGAATTCTTCGAAAATTCAATTTCTGACATTAAAATACTTTTTTCAAAACCGAAGAACTTGGAATTCTGATTTTCTGACGTTTTTAGAGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCCGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCCGGATACGAAATGTCGCGGCTGTGAAATGTCCGGATACGAAATGYCCGGGAGCCGTACTGGTTGAGTCTTAGACGGGAACAACTCCATTTTTTTTTCAAAAATTCAGATATTCAGGGTGTCGAACAACGCCGTCTGTGTTGGCTATGACTGAAGATGGGGATTGTCTTATAGGACAACATGCAAAAGACGTGATCACAAAAGCAACAAGTTCACTTTTTGGTTAGCAACACAGACAAAAATAAATTCTCCTATTCTTTTTTAGATGTAAAACGAATAATCGGCAGACGGTTTGATGACGTTCTCCTTCAACGAGACATGCCTCTTTGGCCGTTTCGGGTTGAGAAGGATACCGATGGAACTCCCTATCTTCAAATTCAAAATGACGCTAAGAAAGTCAAATTCTCAGCTGTTACAGTATCCTCCTTGATTCTGAAATGTCTCAAAGAGAATGCGGAGAGAAAGTTAGGTGTTGAAGTGAAAAGTGCAGTGATTACGGTACCTGCTTATTTCAATGCCACGCAACGGAGAGCAACGGAAGAAGCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTCTGATTTTCTGACGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCGACACCCTGAATATCTG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AATTCTGATTTTCTGACGTTTTTAGAGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCCGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCCGGATACGAAATGTCGCGGCTGTGAAATGTCCGGATACGAAATGTCCGGGAGCCGTACTGGTTGAGTCTTAGACGGGAACAACTCCATTTTTTTTTCAAAAATTCAGATATTCAGGGTGTCGAA</canonical_amplicon>
		<polymorphic_amplicon>AATTCTGATTTTCTGACGTTTTTAGAGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCCGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCTGGCTGCGAAATGTCCGGATACGAAATGTCGCGGCTGTGAAATGTCCGGATACGAAATGYCCGGGAGCCGTACTGGTTGAGTCTTAGACGGGAACAACTCCATTTTTTTTTCAAAAATTCAGATATTCAGGGTGTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32123</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>317126</contig_pos>
        <strand>+</strand>
        <context>GTGAATAAAT[G/T]ATCTGATTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAACTTCAAAACAAACTGATATAATGAAAAACTAAAAATTGTGAATAAAT</left_flank>
        <right_flank>ATCTGATTCGTTATCAGAATCTAGACCAAAATTTTGTCGTCGTTGCCCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCATTAAGATGTCCACTAATCGGCTTGTTTTGTACTGAAAACATTATTAAAAAAACAGGTGTTTTCCAGAAATGGGTTAATAACTGAAAAACTAGGATTTTTTAAAAAACTCAGGAAATTCAATTTTTCAATCTATCGTGAAACCTTTATTAGAAGGCCCTTCCGTTTTTCTAAGGTACCTCCGGAGGGCTCTTCTTTTACAGGAGCTTCTATTAAATTGTGGAGTTCCCAGAATATTTTCCACTGAAAAAGTACAGAAATTTTCTGATTTCAAAACACATTTCTAAAGGGGGGAAGGGGGGTCGTTTTTTCACAGAGGGCTCTTCTATAACAAAGGGCCCTTCTATTTTTACAAGCCCCTCTCGGATGGCCCTTCGATTAAAGGGGCCCTTTTAATACAGGTTTTACGGTTCATAACTTCTTGATATGACATTCTTTAAGTCCCAGAAAACTTCAAAACAAACTGATATAATGAAAAACTAAAAATTGTGAATAAATGATCTGATTCGTTATCAGAATCTAGACCAAAATTTTGTCGTCGTTGCCCCAGAAAAAGTGCATTTTCTCACGCTAGCCCAGAATTCCCCAAAAATGTGAATTCTCGGGATCAAGCAGATGTTCATGCGTCATAAAGAAATTTCAACTTTTTCTTATTCTTCTTTGGTCTGAGAATATTTTCTTCCTCAATTTTCAATTCTTGAACATTAAATGTCATGGAAGTAATTGTCTGGTGCCCTTTCCTTTGCCCTTTTCTGTTCATTTTTTCGGCTCCATTTTTATGTGACAAACACGACAAAAAAGAAGAAGACGAACCAGATGGGTGGGGAAGACTTAGGGTAAACATGATTAGGTGGAAGATTAGACACCCCTTTGCGCTTGTACAACCGTTTTTTTTTTGGAATGGTGGGGAGGAAAACGAAGAAGACAAACTGTTTGAATAGCCCCAACGAGTTTTTTCTCTTGGATTGGCTGATTCGCTGAGAGAAGAGAACGCATAAC</canonical>
            <polymorphic>TTCATTAAGATGTCCACTAATCGGCTTGTTTTGTACTGAAAACATTATTAAAAAAACAGGTGTTTTCCAGAAATGGGTTAATAACTGAAAAACTAGGATTTTTTAAAAAACTCAGGAAATTCAATTTTTCAATCTATCGTGAAACCTTTATTAGAAGGCCCTTCCGTTTTTCTAAGGTACCTCCGGAGGGCTCTTCTTTTACAGGAGCTTCTATTAAATTGTGGAGTTCCCAGAATATTTTCCACTGAAAAAGTACAGAAATTTTCTGATTTCAAAACACATTTCTAAAGGGGGGAAGGGGGGTCGTTTTTTCACAGAGGGCTCTTCTATAACAAAGGGCCCTTCTATTTTTACAAGCCCCTCTCGGATGGCCCTTCGATTAAAGGGGCCCTTTTAATACAGGTTTTACGGTTCATAACTTCTTGATATGACATTCTTTAAGTCCCAGAAAACTTCAAAACAAACTGATATAATGAAAAACTAAAAATTGTGAATAAATKATCTGATTCGTTATCAGAATCTAGACCAAAATTTTGTCGTCGTTGCCCCAGAAAAAGTGCATTTTCTCACGCTAGCCCAGAATTCCCCAAAAATGTGAATTCTCGGGATCAAGCAGATGTTCATGCGTCATAAAGAAATTTCAACTTTTTCTTATTCTTCTTTGGTCTGAGAATATTTTCTTCCTCAATTTTCAATTCTTGAACATTAAATGTCATGGAAGTAATTGTCTGGTGCCCTTTCCTTTGCCCTTTTCTGTTCATTTTTTCGGCTCCATTTTTATGTGACAAACACGACAAAAAAGAAGAAGACGAACCAGATGGGTGGGGAAGACTTAGGGTAAACATGATTAGGTGGAAGATTAGACACCCCTTTGCGCTTGTACAACCGTTTTTTTTTTGGAATGGTGGGGAGGAAAACGAAGAAGACAAACTGTTTGAATAGCCCCAACGAGTTTTTTCTCTTGGATTGGCTGATTCGCTGAGAGAAGAGAACGCATAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>499 394 107</canonical_bands>
                <polymorphic_bands>606 394</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTAAGTCCCAGAAAACTTCA</pcr_primer_p1>
		<pcr_primer_p2>AGGAAGAAAATATTCTCAGACCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTAAGTCCCAGAAAACTTCAAAACAAACTGATATAATGAAAAACTAAAAATTGTGAATAAATGATCTGATTCGTTATCAGAATCTAGACCAAAATTTTGTCGTCGTTGCCCCAGAAAAAGTGCATTTTCTCACGCTAGCCCAGAATTCCCCAAAAATGTGAATTCTCGGGATCAAGCAGATGTTCATGCGTCATAAAGAAATTTCAACTTTTTCTTATTCTTCTTTGGTCTGAGAATATTTTCTTCCT</canonical_amplicon>
		<polymorphic_amplicon>CTTTAAGTCCCAGAAAACTTCAAAACAAACTGATATAATGAAAAACTAAAAATTGTGAATAAATKATCTGATTCGTTATCAGAATCTAGACCAAAATTTTGTCGTCGTTGCCCCAGAAAAAGTGCATTTTCTCACGCTAGCCCAGAATTCCCCAAAAATGTGAATTCTCGGGATCAAGCAGATGTTCATGCGTCATAAAGAAATTTCAACTTTTTCTTATTCTTCTTTGGTCTGAGAATATTTTCTTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32124</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>317361</contig_pos>
        <strand>+</strand>
        <context>TTGKCTGGTG[C/T]CCTTTCCTTY</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAATTTTCAATTCTTGAACATTAAATGTCATGGAAGTAATTGTCTGGTG</left_flank>
        <right_flank>CCTTTCCTTTGCCCTTTTCTGTTCATTTTTTCGGCTCCATTTTTATGTGA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTTCCACTGAAAAAGTACAGAAATTTTCTGATTTCAAAACACATTTCTAAAGGGGGGAAGGGGGGTCGTTTTTTCACAGAGGGCTCTTCTATAACAAAGGGCCCTTCTATTTTTACAAGCCCCTCTCGGATGGCCCTTCGATTAAAGGGGCCCTTTTAATACAGGTTTTACGGTTCATAACTTCTTGATATGACATTCTTTAAGTCCCAGAAAACTTCAAAACAAACTGATATAATGAAAAACTAAAAATTGTGAATAAATGATCTGATTCGTTATCAGAATCTAGACCAAAATTTTGTCGTCGTTGCCCCAGAAAAAGTGCATTTTCTCACGCTAGCCCAGAATTCCCCAAAAATGTGAATTCTCGGGATCAAGCAGATGTTCATGCGTCATAAAGAAATTTCAACTTTTTCTTATTCTTCTTTGGTCTGAGAATATTTTCTTCCTCAATTTTCAATTCTTGAACATTAAATGTCATGGAAGTAATTGTCTGGTGCCCTTTCCTTTGCCCTTTTCTGTTCATTTTTTCGGCTCCATTTTTATGTGACAAACACGACAAAAAAGAAGAAGACGAACCAGATGGGTGGGGAAGACTTAGGGTAAACATGATTAGGTGGAAGATTAGACACCCCTTTGCGCTTGTACAACCGTTTTTTTTTTGGAATGGTGGGGAGGAAAACGAAGAAGACAAACTGTTTGAATAGCCCCAACGAGTTTTTTCTCTTGGATTGGCTGATTCGCTGAGAGAAGAGAACGCATAACATTTTCCAAGCTGGAAAACATATTTTTGTGAGCTTGTCATCCTCTTTCTAGGTTTCAGTTATTTTTTCGAACCATGGCAATTTCCAGATGTATGAGAACGATTCTTCTCAAATTTGGTGTTTTTTTCGAAAAATTCAGATTGCATACTGTTCAAAACTTTTTTGCTAAATACAGGGGCCCTTCAATTAGAGGGAGATCTTACAATTTTTTGGTAATTTTTTCCAAACTTTTCCAA</canonical>
            <polymorphic>TATTTTCCACTGAAAAAGTACAGAAATTTTCTGATTTCAAAACACATTTCTAAAGGGGGGAAGGGGGGTCGTTTTTTCACAGAGGGCTCTTCTATAACAAAGGGCCCTTCTATTTTTACAAGCCCCTCTCGGATGGCCCTTCGATTAAAGGGGCCCTTTTAATACAGGTTTTACGGTTCATAACTTCTTGATATGACATTCTTTAAGTCCCAGAAAACTTCAAAACAAACTGATATAATGAAAAACTAAAAATTGTGAATAAATGATCTGATTCGTTATCAGAATCTAGACCAAAATTTTGTCGTCGTTGCCCCAGAAAAAGTGCATTTTCTCACGCTAGCCCAGAATTCCCCAAAAATGTGAATTCTCGGGATCAAGCAGATGTTCATGCGTCATAAAGAAATTTCAACTTTTTCTTATTCTTCTTTGGTCTGAGAATATTTTCTTCCTCAATTTTCAATTCTTGAACATTAAATGTCATGGAAGTAATTGTCTGGTGYCCTTTCCTTTGCCCTTTTCTGTTCATTTTTTCGGCTCCATTTTTATGTGACAAACACGACAAAAAAGAAGAAGACGAACCAGATGGGTGGGGAAGACTTAGGGTAAACATGATTAGGTGGAAGATTAGACACCCCTTTGCGCTTGTACAACCGTTTTTTTTTTGGAATGGTGGGGAGGAAAACGAAGAAGACAAACTGTTTGAATAGCCCCAACGAGTTTTTTCTCTTGGATTGGCTGATTCGCTGAGAGAAGAGAACGCATAACATTTTCCAAGCTGGAAAACATATTTTTGTGAGCTTGTCATCCTCTTTCTAGGTTTCAGTTATTTTTTCGAACCATGGCAATTTCCAGATGTATGAGAACGATTCTTCTCAAATTTGGTGTTTTTTTCGAAAAATTCAGATTGCATACTGTTCAAAACTTTTTTGCTAAATACAGGGGCCCTTCAATTAGAGGGAGATCTTACAATTTTTTGGTAATTTTTTCCAAACTTTTCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>443 346 106 56 49</canonical_bands>
                <polymorphic_bands>789 106 56 49</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>443 346 88 56 49 18</canonical_bands>
                <polymorphic_bands>789 88 56 49 18</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>406 346 104 59 48 37</canonical_bands>
                <polymorphic_bands>406 383 104 59 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGTCATAAAGAAATTTCAACT</pcr_primer_p1>
		<pcr_primer_p2>GTGTCTAATCTTCCACCTAATCA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GCGTCATAAAGAAATTTCAACTTTTTCTTATTCTTCTTTGGTCTGAGAATATTTTCTTCCTCAATTTTCAATTCTTGAACATTAAATGTCATGGAAGTAATTGTCTGGTGCCCTTTCCTTTGCCCTTTTCTGTTCATTTTTTCGGCTCCATTTTTATGTGACAAACACGACAAAAAAGAAGAAGACGAACCAGATGGGTGGGGAAGACTTAGGGTAAACATGATTAGGTGGAAGATTAGACAC</canonical_amplicon>
		<polymorphic_amplicon>GCGTCATAAAGAAATTTCAACTTTTTCTTATTCTTCTTTGGTCTGAGAATATTTTCTTCCTCAATTTTCAATTCTTGAACATTAAATGTCATGGAAGTAATTGTCTGGTGYCCTTTCCTTTGCCCTTTTCTGTTCATTTTTTCGGCTCCATTTTTATGTGACAAACACGACAAAAAAGAAGAAGACGAACCAGATGGGTGGGGAAGACTTAGGGTAAACATGATTAGGTGGAAGATTAGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32125</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>355556</contig_pos>
        <strand>+</strand>
        <context>ACTGGTGGCA[G/T]TGATGGCAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCAAATCCTTCTTATCATCCCCCAGAATCCACGAATCCACTGGTGGCA</left_flank>
        <right_flank>TGATGGCAAGGTTTCTCCCAGCCTCGAATTCTCTCTAGAATCCGTAAGCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGTACTCTGAGCACTTCGAGCCCGCTTTTGAGATGATTTGGGACGTTTTCTGAAAGTTACAATTAGCATACGCTTTTAGCCTTGAGCTCACATTCAAACTCAACAGCTGCCCATACAAAAACGGTGAGCTCGCTATCAAAGTAGGCGGGATTTTTGTGTAGGGGCCTGTCTTCTCATGAACAATATCTGATGTCATCAAGGTGTTGTAGAGAGATTGCACAGCGGGACCTTTCACAAGAAGACAGGAAATGCCGTCGCGTTCGGAGAGCTGGGTGGAGAGTTGCCTGAAAATCATGGGCATATAGTGAAAAACTCTATTAAAAGAGCACCTCCTCGCATTGCCAACACCTTTGACTTGTCGCGGAGACACGCCCACTTCTTTCAGCCAGTCCGCATTGGCTTTCGTCGGACTATCATTCTCATCCTCCTCACTTTGATCACTATCTCTTTTCAAATCCTTCTTATCATCCCCCAGAATCCACGAATCCACTGGTGGCAGTGATGGCAAGGTTTCTCCCAGCCTCGAATTCTCTCTAGAATCCGTAAGCAGACAGTCCATAGTGTTCGTGTTGGGACCAAATAGGCACACACTACTGCTCCGTTTCATGCTCGTTTTCGCTCCAATCACTTCATAATCGACGCCTGAAAATTGGAAAAAAAATTTTTTGGAATAGAGCGCGCTTGCCAGTGACAAGTTGTCACCCTTAAATACCTTGTTTCCTCAAGTGCTCTCTTGTCGATGACGTGGTATGTGATACCAGTGCCACTAGCTCCTGTCCTCTTCCAAAACATGATTGTGATGTCTCATCAGGTCCACCAAACACATCTACGTCTTCTGAATTTTCTGGCTTCTTAGTAAATAACACATTGAAGACAGCGGATGCCACGTAGAAGTGATCCCTCTCGCCTTTCTTATAAGACATGAAAAGTTGCTCATAGCACTCGACCCACTGGGTGAACATGGTGTCCGTACAAAGAGGTGGGAGAGGTACCCGTGCC</canonical>
            <polymorphic>ACGTACTCTGAGCACTTCGAGCCCGCTTTTGAGATGATTTGGGACGTTTTCTGAAAGTTACAATTAGCATACGCTTTTAGCCTTGAGCTCACATTCAAACTCAACAGCTGCCCATACAAAAACGGTGAGCTCGCTATCAAAGTAGGCGGGATTTTTGTGTAGGGGCCTGTCTTCTCATGAACAATATCTGATGTCATCAAGGTGTTGTAGAGAGATTGCACAGCGGGACCTTTCACAAGAAGACAGGAAATGCCGTCGCGTTCGGAGAGCTGGGTGGAGAGTTGCCTGAAAATCATGGGCATATAGTGAAAAACTCTATTAAAAGAGCACCTCCTCGCATTGCCAACACCTTTGACTTGTCGCGGAGACACGCCCACTTCTTTCAGCCAGTCCGCATTGGCTTTCGTCGGACTATCATTCTCATCCTCCTCACTTTGATCACTATCTCTTTTCAAATCCTTCTTATCATCCCCCAGAATCCACGAATCCACTGGTGGCAKTGATGGCAAGGTTTCTCCCAGCCTCGAATTCTCTCTAGAATCCGTAAGCAGACAGTCCATAGTGTTCGTGTTGGGACCAAATAGGCACACACTACTGCTCCGTTTCATGCTCGTTTTCGCTCCAATCACTTCATAATCGACGCCTGAAAATTGGAAAAAAAATTTTTTGGAATAGAGCGCGCTTGCCAGTGACAAGTTGTCACCCTTAAATACCTTGTTTCCTCAAGTGCTCTCTTGTCGATGACGTGGTATGTGATACCAGTGCCACTAGCTCCTGTCCTCTTCCAAAACATGATTGTGATGTCTCATCAGGTCCACCAAACACATCTACGTCTTCTGAATTTTCTGGCTTCTTAGTAAATAACACATTGAAGACAGCGGATGCCACGTAGAAGTGATCCCTCTCGCCTTTCTTATAAGACATGAAAAGTTGCTCATAGCACTCGACCCACTGGGTGAACATGGTGTCCGTACAAAGAGGTGGGAGAGGTACCCGTGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>77 63 62 56 45 45 42 41 41 37 36 33 32 32 27 22 21 21 19 19 17 17 16 16 15 15 14 11 10 9 9 9 9 8 7 7 7 6 6 6 6 3 2 2 2</canonical_bands>
                <polymorphic_bands>77 68 63 56 45 45 42 41 41 37 36 33 32 32 27 22 21 21 19 19 17 17 16 16 15 15 14 11 10 9 9 9 9 8 7 7 7 6 6 6 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTCGTCGGACTATCATTCT</pcr_primer_p1>
		<pcr_primer_p2>GCGTCGATTATGAAGTGATT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTTTCGTCGGACTATCATTCTCATCCTCCTCACTTTGATCACTATCTCTTTTCAAATCCTTCTTATCATCCCCCAGAATCCACGAATCCACTGGTGGCAGTGATGGCAAGGTTTCTCCCAGCCTCGAATTCTCTCTAGAATCCGTAAGCAGACAGTCCATAGTGTTCGTGTTGGGACCAAATAGGCACACACTACTGCTCCGTTTCATGCTCGTTTTCGCTCCAATCACTTCATAATCGACGC</canonical_amplicon>
		<polymorphic_amplicon>CTTTCGTCGGACTATCATTCTCATCCTCCTCACTTTGATCACTATCTCTTTTCAAATCCTTCTTATCATCCCCCAGAATCCACGAATCCACTGGTGGCAKTGATGGCAAGGTTTCTCCCAGCCTCGAATTCTCTCTAGAATCCGTAAGCAGACAGTCCATAGTGTTCGTGTTGGGACCAAATAGGCACACACTACTGCTCCGTTTCATGCTCGTTTTCGCTCCAATCACTTCATAATCGACGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32126</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>355568</contig_pos>
        <strand>+</strand>
        <context>GATGGCAAGG[C/T]TTCTCCCAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTATCATCCCCCAGAATCCACGAATCCACTGGTGGCAGTGATGGCAAGG</left_flank>
        <right_flank>TTCTCCCAGCCTCGAATTCTCTCTAGAATCCGTAAGCAGACAGTCCATAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTTCGAGCCCGCTTTTGAGATGATTTGGGACGTTTTCTGAAAGTTACAATTAGCATACGCTTTTAGCCTTGAGCTCACATTCAAACTCAACAGCTGCCCATACAAAAACGGTGAGCTCGCTATCAAAGTAGGCGGGATTTTTGTGTAGGGGCCTGTCTTCTCATGAACAATATCTGATGTCATCAAGGTGTTGTAGAGAGATTGCACAGCGGGACCTTTCACAAGAAGACAGGAAATGCCGTCGCGTTCGGAGAGCTGGGTGGAGAGTTGCCTGAAAATCATGGGCATATAGTGAAAAACTCTATTAAAAGAGCACCTCCTCGCATTGCCAACACCTTTGACTTGTCGCGGAGACACGCCCACTTCTTTCAGCCAGTCCGCATTGGCTTTCGTCGGACTATCATTCTCATCCTCCTCACTTTGATCACTATCTCTTTTCAAATCCTTCTTATCATCCCCCAGAATCCACGAATCCACTGGTGGCAGTGATGGCAAGGTTTCTCCCAGCCTCGAATTCTCTCTAGAATCCGTAAGCAGACAGTCCATAGTGTTCGTGTTGGGACCAAATAGGCACACACTACTGCTCCGTTTCATGCTCGTTTTCGCTCCAATCACTTCATAATCGACGCCTGAAAATTGGAAAAAAAATTTTTTGGAATAGAGCGCGCTTGCCAGTGACAAGTTGTCACCCTTAAATACCTTGTTTCCTCAAGTGCTCTCTTGTCGATGACGTGGTATGTGATACCAGTGCCACTAGCTCCTGTCCTCTTCCAAAACATGATTGTGATGTCTCATCAGGTCCACCAAACACATCTACGTCTTCTGAATTTTCTGGCTTCTTAGTAAATAACACATTGAAGACAGCGGATGCCACGTAGAAGTGATCCCTCTCGCCTTTCTTATAAGACATGAAAAGTTGCTCATAGCACTCGACCCACTGGGTGAACATGGTGTCCGTACAAAGAGGTGGGAGAGGTACCCGTGCCACGTTTCTGAAT</canonical>
            <polymorphic>CACTTCGAGCCCGCTTTTGAGATGATTTGGGACGTTTTCTGAAAGTTACAATTAGCATACGCTTTTAGCCTTGAGCTCACATTCAAACTCAACAGCTGCCCATACAAAAACGGTGAGCTCGCTATCAAAGTAGGCGGGATTTTTGTGTAGGGGCCTGTCTTCTCATGAACAATATCTGATGTCATCAAGGTGTTGTAGAGAGATTGCACAGCGGGACCTTTCACAAGAAGACAGGAAATGCCGTCGCGTTCGGAGAGCTGGGTGGAGAGTTGCCTGAAAATCATGGGCATATAGTGAAAAACTCTATTAAAAGAGCACCTCCTCGCATTGCCAACACCTTTGACTTGTCGCGGAGACACGCCCACTTCTTTCAGCCAGTCCGCATTGGCTTTCGTCGGACTATCATTCTCATCCTCCTCACTTTGATCACTATCTCTTTTCAAATCCTTCTTATCATCCCCCAGAATCCACGAATCCACTGGTGGCAGTGATGGCAAGGYTTCTCCCAGCCTCGAATTCTCTCTAGAATCCGTAAGCAGACAGTCCATAGTGTTCGTGTTGGGACCAAATAGGCACACACTACTGCTCCGTTTCATGCTCGTTTTCGCTCCAATCACTTCATAATCGACGCCTGAAAATTGGAAAAAAAATTTTTTGGAATAGAGCGCGCTTGCCAGTGACAAGTTGTCACCCTTAAATACCTTGTTTCCTCAAGTGCTCTCTTGTCGATGACGTGGTATGTGATACCAGTGCCACTAGCTCCTGTCCTCTTCCAAAACATGATTGTGATGTCTCATCAGGTCCACCAAACACATCTACGTCTTCTGAATTTTCTGGCTTCTTAGTAAATAACACATTGAAGACAGCGGATGCCACGTAGAAGTGATCCCTCTCGCCTTTCTTATAAGACATGAAAAGTTGCTCATAGCACTCGACCCACTGGGTGAACATGGTGTCCGTACAAAGAGGTGGGAGAGGTACCCGTGCCACGTTTCTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTATCATCCCCCAGAAT</pcr_primer_p1>
		<pcr_primer_p2>AAGGTATTTAAGGGTGACAACTT</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TTCTTATCATCCCCCAGAATCCACGAATCCACTGGTGGCAGTGATGGCAAGGTTTCTCCCAGCCTCGAATTCTCTCTAGAATCCGTAAGCAGACAGTCCATAGTGTTCGTGTTGGGACCAAATAGGCACACACTACTGCTCCGTTTCATGCTCGTTTTCGCTCCAATCACTTCATAATCGACGCCTGAAAATTGGAAAAAAAATTTTTTGGAATAGAGCGCGCTTGCCAGTGACAAGTTGTCACCCTTAAATACCTT</canonical_amplicon>
		<polymorphic_amplicon>TTCTTATCATCCCCCAGAATCCACGAATCCACTGGTGGCAGTGATGGCAAGGYTTCTCCCAGCCTCGAATTCTCTCTAGAATCCGTAAGCAGACAGTCCATAGTGTTCGTGTTGGGACCAAATAGGCACACACTACTGCTCCGTTTCATGCTCGTTTTCGCTCCAATCACTTCATAATCGACGCCTGAAAATTGGAAAAAAAATTTTTTGGAATAGAGCGCGCTTGCCAGTGACAAGTTGTCACCCTTAAATACCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32127</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>355711</contig_pos>
        <strand>+</strand>
        <context>TGAAAATTGG[C/T]AAAAAAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATGCTCGTTTTCGCTCCAATCACTTCATAATCGACGCCTGAAAATTGG</left_flank>
        <right_flank>AAAAAAATTTTTTGGAATAGAGCGCGCTTGCCAGTGACAAGTTGTCACCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGTAGGGGCCTGTCTTCTCATGAACAATATCTGATGTCATCAAGGTGTTGTAGAGAGATTGCACAGCGGGACCTTTCACAAGAAGACAGGAAATGCCGTCGCGTTCGGAGAGCTGGGTGGAGAGTTGCCTGAAAATCATGGGCATATAGTGAAAAACTCTATTAAAAGAGCACCTCCTCGCATTGCCAACACCTTTGACTTGTCGCGGAGACACGCCCACTTCTTTCAGCCAGTCCGCATTGGCTTTCGTCGGACTATCATTCTCATCCTCCTCACTTTGATCACTATCTCTTTTCAAATCCTTCTTATCATCCCCCAGAATCCACGAATCCACTGGTGGCAGTGATGGCAAGGTTTCTCCCAGCCTCGAATTCTCTCTAGAATCCGTAAGCAGACAGTCCATAGTGTTCGTGTTGGGACCAAATAGGCACACACTACTGCTCCGTTTCATGCTCGTTTTCGCTCCAATCACTTCATAATCGACGCCTGAAAATTGGAAAAAAAATTTTTTGGAATAGAGCGCGCTTGCCAGTGACAAGTTGTCACCCTTAAATACCTTGTTTCCTCAAGTGCTCTCTTGTCGATGACGTGGTATGTGATACCAGTGCCACTAGCTCCTGTCCTCTTCCAAAACATGATTGTGATGTCTCATCAGGTCCACCAAACACATCTACGTCTTCTGAATTTTCTGGCTTCTTAGTAAATAACACATTGAAGACAGCGGATGCCACGTAGAAGTGATCCCTCTCGCCTTTCTTATAAGACATGAAAAGTTGCTCATAGCACTCGACCCACTGGGTGAACATGGTGTCCGTACAAAGAGGTGGGAGAGGTACCCGTGCCACGTTTCTGAATTATGATGTTTGGTTCGTAAAATACTTCAACTCTTACTTCAACTCCGAAGTGATTCTTGGGTACAACGTCATTCCGGGCACTACTGGAAATTGATAATAGAGCGCAGAAGCTTCGAGGAGAGCTAGCACAGACGATGGTGAGTA</canonical>
            <polymorphic>TGTGTAGGGGCCTGTCTTCTCATGAACAATATCTGATGTCATCAAGGTGTTGTAGAGAGATTGCACAGCGGGACCTTTCACAAGAAGACAGGAAATGCCGTCGCGTTCGGAGAGCTGGGTGGAGAGTTGCCTGAAAATCATGGGCATATAGTGAAAAACTCTATTAAAAGAGCACCTCCTCGCATTGCCAACACCTTTGACTTGTCGCGGAGACACGCCCACTTCTTTCAGCCAGTCCGCATTGGCTTTCGTCGGACTATCATTCTCATCCTCCTCACTTTGATCACTATCTCTTTTCAAATCCTTCTTATCATCCCCCAGAATCCACGAATCCACTGGTGGCAGTGATGGCAAGGTTTCTCCCAGCCTCGAATTCTCTCTAGAATCCGTAAGCAGACAGTCCATAGTGTTCGTGTTGGGACCAAATAGGCACACACTACTGCTCCGTTTCATGCTCGTTTTCGCTCCAATCACTTCATAATCGACGCCTGAAAATTGGYAAAAAAATTTTTTGGAATAGAGCGCGCTTGCCAGTGACAAGTTGTCACCCTTAAATACCTTGTTTCCTCAAGTGCTCTCTTGTCGATGACGTGGTATGTGATACCAGTGCCACTAGCTCCTGTCCTCTTCCAAAACATGATTGTGATGTCTCATCAGGTCCACCAAACACATCTACGTCTTCTGAATTTTCTGGCTTCTTAGTAAATAACACATTGAAGACAGCGGATGCCACGTAGAAGTGATCCCTCTCGCCTTTCTTATAAGACATGAAAAGTTGCTCATAGCACTCGACCCACTGGGTGAACATGGTGTCCGTACAAAGAGGTGGGAGAGGTACCCGTGCCACGTTTCTGAATTATGATGTTTGGTTCGTAAAATACTTCAACTCTTACTTCAACTCCGAAGTGATTCTTGGGTACAACGTCATTCCGGGCACTACTGGAAATTGATAATAGAGCGCAGAAGCTTCGAGGAGAGCTAGCACAGACGATGGTGAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCTCTCTAGAATCCGTAAGC</pcr_primer_p1>
		<pcr_primer_p2>CTAGTGGCACTGGTATCACAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATTCTCTCTAGAATCCGTAAGCAGACAGTCCATAGTGTTCGTGTTGGGACCAAATAGGCACACACTACTGCTCCGTTTCATGCTCGTTTTCGCTCCAATCACTTCATAATCGACGCCTGAAAATTGGAAAAAAAATTTTTTGGAATAGAGCGCGCTTGCCAGTGACAAGTTGTCACCCTTAAATACCTTGTTTCCTCAAGTGCTCTCTTGTCGATGACGTGGTATGTGATACCAGTGCCACTAG</canonical_amplicon>
		<polymorphic_amplicon>AATTCTCTCTAGAATCCGTAAGCAGACAGTCCATAGTGTTCGTGTTGGGACCAAATAGGCACACACTACTGCTCCGTTTCATGCTCGTTTTCGCTCCAATCACTTCATAATCGACGCCTGAAAATTGGYAAAAAAATTTTTTGGAATAGAGCGCGCTTGCCAGTGACAAGTTGTCACCCTTAAATACCTTGTTTCCTCAAGTGCTCTCTTGTCGATGACGTGGTATGTGATACCAGTGCCACTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32128</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>355742</contig_pos>
        <strand></strand>
        <context>AGCGCGCTTG[C/T]CAGTGACAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCGACGCCTGAAAATTGGAAAAAAAATTTTTTGGAATAGAGCGCGCTTG</left_flank>
        <right_flank>CAGTGACAAGTTGTCACCCTTAAATACCTTGTTTCCTCAAGTGCTCTCTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGATGTCATCAAGGTGTTGTAGAGAGATTGCACAGCGGGACCTTTCACAAGAAGACAGGAAATGCCGTCGCGTTCGGAGAGCTGGGTGGAGAGTTGCCTGAAAATCATGGGCATATAGTGAAAAACTCTATTAAAAGAGCACCTCCTCGCATTGCCAACACCTTTGACTTGTCGCGGAGACACGCCCACTTCTTTCAGCCAGTCCGCATTGGCTTTCGTCGGACTATCATTCTCATCCTCCTCACTTTGATCACTATCTCTTTTCAAATCCTTCTTATCATCCCCCAGAATCCACGAATCCACTGGTGGCAGTGATGGCAAGGTTTCTCCCAGCCTCGAATTCTCTCTAGAATCCGTAAGCAGACAGTCCATAGTGTTCGTGTTGGGACCAAATAGGCACACACTACTGCTCCGTTTCATGCTCGTTTTCGCTCCAATCACTTCATAATCGACGCCTGAAAATTGGAAAAAAAATTTTTTGGAATAGAGCGCGCTTGCCAGTGACAAGTTGTCACCCTTAAATACCTTGTTTCCTCAAGTGCTCTCTTGTCGATGACGTGGTATGTGATACCAGTGCCACTAGCTCCTGTCCTCTTCCAAAACATGATTGTGATGTCTCATCAGGTCCACCAAACACATCTACGTCTTCTGAATTTTCTGGCTTCTTAGTAAATAACACATTGAAGACAGCGGATGCCACGTAGAAGTGATCCCTCTCGCCTTTCTTATAAGACATGAAAAGTTGCTCATAGCACTCGACCCACTGGGTGAACATGGTGTCCGTACAAAGAGGTGGGAGAGGTACCCGTGCCACGTTTCTGAATTATGATGTTTGGTTCGTAAAATACTTCAACTCTTACTTCAACTCCGAAGTGATTCTTGGGTACAACGTCATTCCGGGCACTACTGGAAATTGATAATAGAGCGCAGAAGCTTCGAGGAGAGCTAGCACAGACGATGGTGAGTACACTGAGGGGTCCTCTTGTCCAGAAATATAC</canonical>
            <polymorphic>TCTGATGTCATCAAGGTGTTGTAGAGAGATTGCACAGCGGGACCTTTCACAAGAAGACAGGAAATGCCGTCGCGTTCGGAGAGCTGGGTGGAGAGTTGCCTGAAAATCATGGGCATATAGTGAAAAACTCTATTAAAAGAGCACCTCCTCGCATTGCCAACACCTTTGACTTGTCGCGGAGACACGCCCACTTCTTTCAGCCAGTCCGCATTGGCTTTCGTCGGACTATCATTCTCATCCTCCTCACTTTGATCACTATCTCTTTTCAAATCCTTCTTATCATCCCCCAGAATCCACGAATCCACTGGTGGCAGTGATGGCAAGGTTTCTCCCAGCCTCGAATTCTCTCTAGAATCCGTAAGCAGACAGTCCATAGTGTTCGTGTTGGGACCAAATAGGCACACACTACTGCTCCGTTTCATGCTCGTTTTCGCTCCAATCACTTCATAATCGACGCCTGAAAATTGGAAAAAAAATTTTTTGGAATAGAGCGCGCTTGYCAGTGACAAGTTGTCACCCTTAAATACCTTGTTTCCTCAAGTGCTCTCTTGTCGATGACGTGGTATGTGATACCAGTGCCACTAGCTCCTGTCCTCTTCCAAAACATGATTGTGATGTCTCATCAGGTCCACCAAACACATCTACGTCTTCTGAATTTTCTGGCTTCTTAGTAAATAACACATTGAAGACAGCGGATGCCACGTAGAAGTGATCCCTCTCGCCTTTCTTATAAGACATGAAAAGTTGCTCATAGCACTCGACCCACTGGGTGAACATGGTGTCCGTACAAAGAGGTGGGAGAGGTACCCGTGCCACGTTTCTGAATTATGATGTTTGGTTCGTAAAATACTTCAACTCTTACTTCAACTCCGAAGTGATTCTTGGGTACAACGTCATTCCGGGCACTACTGGAAATTGATAATAGAGCGCAGAAGCTTCGAGGAGAGCTAGCACAGACGATGGTGAGTACACTGAGGGGTCCTCTTGTCCAGAAATATAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>493 452 51 4</canonical_bands>
                <polymorphic_bands>493 456 51</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTCTCTCTAGAATCCGTAAGC</pcr_primer_p1>
		<pcr_primer_p2>CTAGTGGCACTGGTATCACAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATTCTCTCTAGAATCCGTAAGCAGACAGTCCATAGTGTTCGTGTTGGGACCAAATAGGCACACACTACTGCTCCGTTTCATGCTCGTTTTCGCTCCAATCACTTCATAATCGACGCCTGAAAATTGGAAAAAAAATTTTTTGGAATAGAGCGCGCTTGCCAGTGACAAGTTGTCACCCTTAAATACCTTGTTTCCTCAAGTGCTCTCTTGTCGATGACGTGGTATGTGATACCAGTGCCACTAG</canonical_amplicon>
		<polymorphic_amplicon>AATTCTCTCTAGAATCCGTAAGCAGACAGTCCATAGTGTTCGTGTTGGGACCAAATAGGCACACACTACTGCTCCGTTTCATGCTCGTTTTCGCTCCAATCACTTCATAATCGACGCCTGAAAATTGGAAAAAAAATTTTTTGGAATAGAGCGCGCTTGYCAGTGACAAGTTGTCACCCTTAAATACCTTGTTTCCTCAAGTGCTCTCTTGTCGATGACGTGGTATGTGATACCAGTGCCACTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32129</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>412668</contig_pos>
        <strand></strand>
        <context>tgaattcctg[C/A]atttctgaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GACTTCCTGGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTCCTG</left_flank>
        <right_flank>ATTTCTGAATTTTTGAATTTCTGAATTTCAGAATTTCAGAATTTTTGAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCTTGTTCGACACTTTTTTCATACAATTTTTCCCTCAAAATTTTGTTTTGACTTTCTTTTTCGTTTCGTCAGTTTTTTTTGGTTTTGGTTGTTCCGAAGAATCTGAATGATCCCCGGGTCTGAAAATTGAATTTTTTGGTCCATGAAAGTTATAAAGAGCCTATTCACAAATGGTATGCTTTGTACTCTCAGCTCAGACAGAAAGTATTTTCAGACAATATCTGAAGTTTTCAGACAACTTCTAAAAAAGTATTCTGGACTTCCTGGAATTTTGGAATTTTCTGGAATTTCTGAATTTCTGAATTTCTGAAATTCTGAATTTTTGAATTACTGAATTTCTGGAATTCCTTTTCCTGGTATTCCTGGAAATTCCTGGAATTCCGGAATTTCTGGATTTCCTGGAATTTCTGGATTTCCTGGAATTTCTGGACTTCCTGGGATTTCTGGACTTCCTGGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTCCTGCATTTCTGAATTTTTGAATTTCTGAATTTCAGAATTTCAGAATTTTTGAATTTCAGAATTTCAGAATTTCTGAATTTCAGAATTTCTGAATTCCTGAATTTCTGAATTGCTGAATTTCTGAATTCCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGAAGTTTTCAGTTTTTCAGCTTTCGAGATCACAGTTTCCAAGTTTCAACATTCAGAATTTTAGAATTTTAAGAATTTCGGGATCAAAAAACTTTTGGATTCCCAAAATTATTCAACTTTCCAAACTTGGCCGATTTTTGAACATCTTCTCCTAAAACCGAAAATCCAAAAATCTCAAAAGCCTGTATGATAAATACCAGTTTTGGGATTTGCTACAAAATCCCCTTAAGTCCATAATCCCTGTAACAAATCACGCGGCTCTTGAGTTTTTGAACTGACCACACAAAAACTCCCATGGGAATTTAAGAAAACTCTGAATTTTTGAATTTTTTCGA</canonical>
            <polymorphic>ATTTCTTGTTCGACACTTTTTTCATACAATTTTTCCCTCAAAATTTTGTTTTGACTTTCTTTTTCGTTTCGTCAGTTTTTTTTGGTTTTGGTTGTTCCGAAGAATCTGAATGATCCCCGGGTCTGAAAATTGAATTTTTTGGTCCATGAAAGTTATAAAGAGCCTATTCACAAATGGTATGCTTTGTACTCTCAGCTCAGACAGAAAGTATTTTCAGACAATATCTGAAGTTTTCAGACAACTTCTAAAAAAGTATTCTGGACTTCCTGGAATTTTGGAATTTTCTGGAATTTCTGAATTTCTGAATTTCTGAAATTCTGAATTTTTGAATTACTGAATTTCTGGAATTCCTTTTCCTGGTATTCCTGGAAATTCCTGGAATTCCGGAATTTCTGGATTTCCTGGAATTTCTGGATTTCCTGGAATTTCTGGACTTCCTGGGATTTCTGGACTTCCTGGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTCCTGMATTTCTGAATTTTTGAATTTCTGAATTTCAGAATTTCAGAATTTTTGAATTTCAGAATTTCAGAATTTCTGAATTTCAGAATTTCTGAATTCCTGAATTTCTGAATTGCTGAATTTCTGAATTCCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGAAGTTTTCAGTTTTTCAGCTTTCGAGATCACAGTTTCCAAGTTTCAACATTCAGAATTTTAGAATTTTAAGAATTTCGGGATCAAAAAACTTTTGGATTCCCAAAATTATTCAACTTTCCAAACTTGGCCGATTTTTGAACATCTTCTCCTAAAACCGAAAATCCAAAAATCTCAAAAGCCTGTATGATAAATACCAGTTTTGGGATTTGCTACAAAATCCCCTTAAGTCCATAATCCCTGTAACAAATCACGCGGCTCTTGAGTTTTTGAACTGACCACACAAAAACTCCCATGGGAATTTAAGAAAACTCTGAATTTTTGAATTTTTTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCAGCTCAGACAGAAAGTATT</pcr_primer_p1>
		<pcr_primer_p2>CCAAGTTTGGAAAGTTGAATAA</pcr_primer_p2>
		<pcr_amplicon_size>606</pcr_amplicon_size>
		<canonical_amplicon>TCTCAGCTCAGACAGAAAGTATTTTCAGACAATATCTGAAGTTTTCAGACAACTTCTAAAAAAGTATTCTGGACTTCCTGGAATTTTGGAATTTTCTGGAATTTCTGAATTTCTGAATTTCTGAAATTCTGAATTTTTGAATTACTGAATTTCTGGAATTCCTTTTCCTGGTATTCCTGGAAATTCCTGGAATTCCGGAATTTCTGGATTTCCTGGAATTTCTGGATTTCCTGGAATTTCTGGACTTCCTGGGATTTCTGGACTTCCTGGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTCCTGCATTTCTGAATTTTTGAATTTCTGAATTTCAGAATTTCAGAATTTTTGAATTTCAGAATTTCAGAATTTCTGAATTTCAGAATTTCTGAATTCCTGAATTTCTGAATTGCTGAATTTCTGAATTCCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGAAGTTTTCAGTTTTTCAGCTTTCGAGATCACAGTTTCCAAGTTTCAACATTCAGAATTTTAGAATTTTAAGAATTTCGGGATCAAAAAACTTTTGGATTCCCAAAATTATTCAACTTTCCAAACTTGG</canonical_amplicon>
		<polymorphic_amplicon>TCTCAGCTCAGACAGAAAGTATTTTCAGACAATATCTGAAGTTTTCAGACAACTTCTAAAAAAGTATTCTGGACTTCCTGGAATTTTGGAATTTTCTGGAATTTCTGAATTTCTGAATTTCTGAAATTCTGAATTTTTGAATTACTGAATTTCTGGAATTCCTTTTCCTGGTATTCCTGGAAATTCCTGGAATTCCGGAATTTCTGGATTTCCTGGAATTTCTGGATTTCCTGGAATTTCTGGACTTCCTGGGATTTCTGGACTTCCTGGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTCCTGMATTTCTGAATTTTTGAATTTCTGAATTTCAGAATTTCAGAATTTTTGAATTTCAGAATTTCAGAATTTCTGAATTTCAGAATTTCTGAATTCCTGAATTTCTGAATTGCTGAATTTCTGAATTCCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGAAGTTTTCAGTTTTTCAGCTTTCGAGATCACAGTTTCCAAGTTTCAACATTCAGAATTTTAGAATTTTAAGAATTTCGGGATCAAAAAACTTTTGGATTCCCAAAATTATTCAACTTTCCAAACTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32130</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>412713</contig_pos>
        <strand></strand>
        <context>ttcagaattt[T/C]tgaatttcag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCCTGCATTTCTGAATTTTTGAATTTCTGAATTTCAGAATTTCAGAATTT</left_flank>
        <right_flank>TGAATTTCAGAATTTCAGAATTTCTGAATTTCAGAATTTCTGAATTCCTG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTTTGACTTTCTTTTTCGTTTCGTCAGTTTTTTTTGGTTTTGGTTGTTCCGAAGAATCTGAATGATCCCCGGGTCTGAAAATTGAATTTTTTGGTCCATGAAAGTTATAAAGAGCCTATTCACAAATGGTATGCTTTGTACTCTCAGCTCAGACAGAAAGTATTTTCAGACAATATCTGAAGTTTTCAGACAACTTCTAAAAAAGTATTCTGGACTTCCTGGAATTTTGGAATTTTCTGGAATTTCTGAATTTCTGAATTTCTGAAATTCTGAATTTTTGAATTACTGAATTTCTGGAATTCCTTTTCCTGGTATTCCTGGAAATTCCTGGAATTCCGGAATTTCTGGATTTCCTGGAATTTCTGGATTTCCTGGAATTTCTGGACTTCCTGGGATTTCTGGACTTCCTGGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTCCTGCATTTCTGAATTTTTGAATTTCTGAATTTCAGAATTTCAGAATTTTTGAATTTCAGAATTTCAGAATTTCTGAATTTCAGAATTTCTGAATTCCTGAATTTCTGAATTGCTGAATTTCTGAATTCCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGAAGTTTTCAGTTTTTCAGCTTTCGAGATCACAGTTTCCAAGTTTCAACATTCAGAATTTTAGAATTTTAAGAATTTCGGGATCAAAAAACTTTTGGATTCCCAAAATTATTCAACTTTCCAAACTTGGCCGATTTTTGAACATCTTCTCCTAAAACCGAAAATCCAAAAATCTCAAAAGCCTGTATGATAAATACCAGTTTTGGGATTTGCTACAAAATCCCCTTAAGTCCATAATCCCTGTAACAAATCACGCGGCTCTTGAGTTTTTGAACTGACCACACAAAAACTCCCATGGGAATTTAAGAAAACTCTGAATTTTTGAATTTTTTCGAAACGCCCTTTTTTACATTTCCTAGAAGCTTTTTGGTGTCACTTTG</canonical>
            <polymorphic>TTGTTTTGACTTTCTTTTTCGTTTCGTCAGTTTTTTTTGGTTTTGGTTGTTCCGAAGAATCTGAATGATCCCCGGGTCTGAAAATTGAATTTTTTGGTCCATGAAAGTTATAAAGAGCCTATTCACAAATGGTATGCTTTGTACTCTCAGCTCAGACAGAAAGTATTTTCAGACAATATCTGAAGTTTTCAGACAACTTCTAAAAAAGTATTCTGGACTTCCTGGAATTTTGGAATTTTCTGGAATTTCTGAATTTCTGAATTTCTGAAATTCTGAATTTTTGAATTACTGAATTTCTGGAATTCCTTTTCCTGGTATTCCTGGAAATTCCTGGAATTCCGGAATTTCTGGATTTCCTGGAATTTCTGGATTTCCTGGAATTTCTGGACTTCCTGGGATTTCTGGACTTCCTGGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTCCTGCATTTCTGAATTTTTGAATTTCTGAATTTCAGAATTTCAGAATTTYTGAATTTCAGAATTTCAGAATTTCTGAATTTCAGAATTTCTGAATTCCTGAATTTCTGAATTGCTGAATTTCTGAATTCCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGAAGTTTTCAGTTTTTCAGCTTTCGAGATCACAGTTTCCAAGTTTCAACATTCAGAATTTTAGAATTTTAAGAATTTCGGGATCAAAAAACTTTTGGATTCCCAAAATTATTCAACTTTCCAAACTTGGCCGATTTTTGAACATCTTCTCCTAAAACCGAAAATCCAAAAATCTCAAAAGCCTGTATGATAAATACCAGTTTTGGGATTTGCTACAAAATCCCCTTAAGTCCATAATCCCTGTAACAAATCACGCGGCTCTTGAGTTTTTGAACTGACCACACAAAAACTCCCATGGGAATTTAAGAAAACTCTGAATTTTTGAATTTTTTCGAAACGCCCTTTTTTACATTTCCTAGAAGCTTTTTGGTGTCACTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCAGCTCAGACAGAAAGTATT</pcr_primer_p1>
		<pcr_primer_p2>CCAAGTTTGGAAAGTTGAATAA</pcr_primer_p2>
		<pcr_amplicon_size>606</pcr_amplicon_size>
		<canonical_amplicon>TCTCAGCTCAGACAGAAAGTATTTTCAGACAATATCTGAAGTTTTCAGACAACTTCTAAAAAAGTATTCTGGACTTCCTGGAATTTTGGAATTTTCTGGAATTTCTGAATTTCTGAATTTCTGAAATTCTGAATTTTTGAATTACTGAATTTCTGGAATTCCTTTTCCTGGTATTCCTGGAAATTCCTGGAATTCCGGAATTTCTGGATTTCCTGGAATTTCTGGATTTCCTGGAATTTCTGGACTTCCTGGGATTTCTGGACTTCCTGGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTCCTGCATTTCTGAATTTTTGAATTTCTGAATTTCAGAATTTCAGAATTTTTGAATTTCAGAATTTCAGAATTTCTGAATTTCAGAATTTCTGAATTCCTGAATTTCTGAATTGCTGAATTTCTGAATTCCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGAAGTTTTCAGTTTTTCAGCTTTCGAGATCACAGTTTCCAAGTTTCAACATTCAGAATTTTAGAATTTTAAGAATTTCGGGATCAAAAAACTTTTGGATTCCCAAAATTATTCAACTTTCCAAACTTGG</canonical_amplicon>
		<polymorphic_amplicon>TCTCAGCTCAGACAGAAAGTATTTTCAGACAATATCTGAAGTTTTCAGACAACTTCTAAAAAAGTATTCTGGACTTCCTGGAATTTTGGAATTTTCTGGAATTTCTGAATTTCTGAATTTCTGAAATTCTGAATTTTTGAATTACTGAATTTCTGGAATTCCTTTTCCTGGTATTCCTGGAAATTCCTGGAATTCCGGAATTTCTGGATTTCCTGGAATTTCTGGATTTCCTGGAATTTCTGGACTTCCTGGGATTTCTGGACTTCCTGGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTCCTGCATTTCTGAATTTTTGAATTTCTGAATTTCAGAATTTCAGAATTTYTGAATTTCAGAATTTCAGAATTTCTGAATTTCAGAATTTCTGAATTCCTGAATTTCTGAATTGCTGAATTTCTGAATTCCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGAAGTTTTCAGTTTTTCAGCTTTCGAGATCACAGTTTCCAAGTTTCAACATTCAGAATTTTAGAATTTTAAGAATTTCGGGATCAAAAAACTTTTGGATTCCCAAAATTATTCAACTTTCCAAACTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32131</snp_id>
        <super_contig>c006900963.Contig3</super_contig>
        <contig_pos>413060</contig_pos>
        <strand></strand>
        <context>AAAATCCCCT[T/A]AAGTCCATAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAAAGCCTGTATGATAAATACCAGTTTTGGGATTTGCTACAAAATCCCCT</left_flank>
        <right_flank>AAGTCCATAATCCCTGTAACAAATCACGCGGCTCTTGAGTTTTTGAACTG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGGATTTCCTGGAATTTCTGGATTTCCTGGAATTTCTGGACTTCCTGGGATTTCTGGACTTCCTGGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTCCTGCATTTCTGAATTTTTGAATTTCTGAATTTCAGAATTTCAGAATTTTTGAATTTCAGAATTTCAGAATTTCTGAATTTCAGAATTTCTGAATTCCTGAATTTCTGAATTGCTGAATTTCTGAATTCCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGAAGTTTTCAGTTTTTCAGCTTTCGAGATCACAGTTTCCAAGTTTCAACATTCAGAATTTTAGAATTTTAAGAATTTCGGGATCAAAAAACTTTTGGATTCCCAAAATTATTCAACTTTCCAAACTTGGCCGATTTTTGAACATCTTCTCCTAAAACCGAAAATCCAAAAATCTCAAAAGCCTGTATGATAAATACCAGTTTTGGGATTTGCTACAAAATCCCCTTAAGTCCATAATCCCTGTAACAAATCACGCGGCTCTTGAGTTTTTGAACTGACCACACAAAAACTCCCATGGGAATTTAAGAAAACTCTGAATTTTTGAATTTTTTCGAAACGCCCTTTTTTACATTTCCTAGAAGCTTTTTGGTGTCACTTTGAGTGTAGCCACTTCCATCTATTTTTTCTAAAAAAGTCCAGACGTTTCCCTAGAATGGGCGGAGCATAATATAGACACGTAGAAGACCTGGAAAAATCTAATCCCCGATTTTTGACATGCTATTTTTTACTGTTTTCATAGAACAGAAACGTTCTGAATTTCTGGAATTTTCGACGGGATTATCTATTCATGAACTAGGCGAGATTCTTTTTTCTGAAAAGAATTTTTCCATGCTGATGTAAAATGATTTTCCAGGAATATTAAGTGAATGATGACTGCCTATTCTTATATTTCTCGAATATTAAATGTTCCTTTTTGATACACTTTTTCGGTCACTTTTTGACGTCC</canonical>
            <polymorphic>CTGGATTTCCTGGAATTTCTGGATTTCCTGGAATTTCTGGACTTCCTGGGATTTCTGGACTTCCTGGAATTTCTGAATTTCTGAATTCCTGAATTTCTGAATTCCTGCATTTCTGAATTTTTGAATTTCTGAATTTCAGAATTTCAGAATTTTTGAATTTCAGAATTTCAGAATTTCTGAATTTCAGAATTTCTGAATTCCTGAATTTCTGAATTGCTGAATTTCTGAATTCCTGAATTTCTGAATTCCTGAATTTCTGAATTTCTGAATTTCTGAAGTTTTCAGTTTTTCAGCTTTCGAGATCACAGTTTCCAAGTTTCAACATTCAGAATTTTAGAATTTTAAGAATTTCGGGATCAAAAAACTTTTGGATTCCCAAAATTATTCAACTTTCCAAACTTGGCCGATTTTTGAACATCTTCTCCTAAAACCGAAAATCCAAAAATCTCAAAAGCCTGTATGATAAATACCAGTTTTGGGATTTGCTACAAAATCCCCTWAAGTCCATAATCCCTGTAACAAATCACGCGGCTCTTGAGTTTTTGAACTGACCACACAAAAACTCCCATGGGAATTTAAGAAAACTCTGAATTTTTGAATTTTTTCGAAACGCCCTTTTTTACATTTCCTAGAAGCTTTTTGGTGTCACTTTGAGTGTAGCCACTTCCATCTATTTTTTCTAAAAAAGTCCAGACGTTTCCCTAGAATGGGCGGAGCATAATATAGACACGTAGAAGACCTGGAAAAATCTAATCCCCGATTTTTGACATGCTATTTTTTACTGTTTTCATAGAACAGAAACGTTCTGAATTTCTGGAATTTTCGACGGGATTATCTATTCATGAACTAGGCGAGATTCTTTTTTCTGAAAAGAATTTTTCCATGCTGATGTAAAATGATTTTCCAGGAATATTAAGTGAATGATGACTGCCTATTCTTATATTTCTCGAATATTAAATGTTCCTTTTTGATACACTTTTTCGGTCACTTTTTGACGTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTTAAG</site>
                <isoschizomers>
                    <enzyme>AflII</enzyme>
                    <enzyme>BfrI</enzyme>
                    <enzyme>BspTI</enzyme>
                    <enzyme>Bst98I</enzyme>
                    <enzyme>MspCI</enzyme>
                    <enzyme>Vha464I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>342 337 157 77 46 41</canonical_bands>
                <polymorphic_bands>342 337 234 46 41</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>498 466 36</canonical_bands>
                <polymorphic_bands>534 466</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAACATCTTCTCCTAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TACACTCAAAGTGACACCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAACATCTTCTCCTAAAACCGAAAATCCAAAAATCTCAAAAGCCTGTATGATAAATACCAGTTTTGGGATTTGCTACAAAATCCCCTTAAGTCCATAATCCCTGTAACAAATCACGCGGCTCTTGAGTTTTTGAACTGACCACACAAAAACTCCCATGGGAATTTAAGAAAACTCTGAATTTTTGAATTTTTTCGAAACGCCCTTTTTTACATTTCCTAGAAGCTTTTTGGTGTCACTTTGAGTGTA</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAACATCTTCTCCTAAAACCGAAAATCCAAAAATCTCAAAAGCCTGTATGATAAATACCAGTTTTGGGATTTGCTACAAAATCCCCTWAAGTCCATAATCCCTGTAACAAATCACGCGGCTCTTGAGTTTTTGAACTGACCACACAAAAACTCCCATGGGAATTTAAGAAAACTCTGAATTTTTGAATTTTTTCGAAACGCCCTTTTTTACATTTCCTAGAAGCTTTTTGGTGTCACTTTGAGTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32132</snp_id>
        <super_contig>c007000836.Contig1</super_contig>
        <contig_pos>7982</contig_pos>
        <strand>+</strand>
        <context>CATCCACACC[C/T]AATCCTCCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTCAGCCTCGAAAACTGGCTCCATTTCCGTAGTATCATCATCCACACC</left_flank>
        <right_flank>AATCCTCCAATGTTCACAAGATTTGGAAGAGTTGGTGCTGAGAAGTCAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCATTCAGAAGTTTCTTCTTGTCTGATCGGATTCCCCATCCCTTTTTCTCAATAGCTCTGCTGTTCAAATTTTGATCGAACATAAAAGGGATAGTTATTAATGGAACCCCAGCACGAGCAGCTTCCACGAGCCCATTGTAACCAGCATGAGTGATAAAAGTTCGGAGACGAGGATGATCTGAAATACAGACTTTCCTACAATTCAGTAGACCTAGAAACTCACGTAAAATGGCTGGTTGTGGGAGCCAGTCAGAGACAAACACATTCGAAATGCCCTTTGCTCTCTCTTTCGTGTTCTTATCATACTTGTCGGCTCTGATAAGGAAGTGATAGTCGGGAAACTTCTTGACGATTCCCAAAAACGATTCCATCACTTTTTTATCAATTGTTGAAGTGTTGGCAATGGTTCCCAGGGAAAATAAGATAACTCCTTTCTCTCCTTTCTTCATTTCAGCCTCGAAAACTGGCTCCATTTCCGTAGTATCATCATCCACACCTAATCCTCCAATGTTCACAAGATTTGGAAGAGTTGGTGCTGAGAAGTCAATGATTTCATCTGTCGCCAAAAAGATGATGTCGGCGTTTCGCACGATCTCCGGCACTGATGGGAAATCTTGTCTGAAAATAATCTGAGATGATCAGAAAGCAGATTTAAAACCAAAAAGCTCACCCGAATTTGTTTCGGAAAATAAACGACAATCGGGTGTGCATATAACGGAATAGCATATTGCATGTAAATCCGTTCAATAGATTTTGTGCTCTTTCGAAATACGTTGGCTCAGGACTCATATCAGCAACAAACGGAACACTTGCATATGGAGCAGGATGACTGGTATAATCGTAGACATGGGAAAAATACGGGCAACTAGAGATGAGAAATCTTCTCTCGATTCCGAGAGCTTTTGCGTATCCGAAGCCACAAATATTGAGTTGTTCGGCGAAAAAGCCATCAAAGTTTTGAGCCTTGAGCTCTTGGAAGATGTCATCCATCTCGAGAA</canonical>
            <polymorphic>GATCATTCAGAAGTTTCTTCTTGTCTGATCGGATTCCCCATCCCTTTTTCTCAATAGCTCTGCTGTTCAAATTTTGATCGAACATAAAAGGGATAGTTATTAATGGAACCCCAGCACGAGCAGCTTCCACGAGCCCATTGTAACCAGCATGAGTGATAAAAGTTCGGAGACGAGGATGATCTGAAATACAGACTTTCCTACAATTCAGTAGACCTAGAAACTCACGTAAAATGGCTGGTTGTGGGAGCCAGTCAGAGACAAACACATTCGAAATGCCCTTTGCTCTCTCTTTCGTGTTCTTATCATACTTGTCGGCTCTGATAAGGAAGTGATAGTCGGGAAACTTCTTGACGATTCCCAAAAACGATTCCATCACTTTTTTATCAATTGTTGAAGTGTTGGCAATGGTTCCCAGGGAAAATAAGATAACTCCTTTCTCTCCTTTCTTCATTTCAGCCTCGAAAACTGGCTCCATTTCCGTAGTATCATCATCCACACCYAATCCTCCAATGTTCACAAGATTTGGAAGAGTTGGTGCTGAGAAGTCAATGATTTCATCTGTCGCCAAAAAGATGATGTCGGCGTTTCGCACGATCTCCGGCACTGATGGGAAATCTTGTCTGAAAATAATCTGAGATGATCAGAAAGCAGATTTAAAACCAAAAAGCTCACCCGAATTTGTTTCGGAAAATAAACGACAATCGGGTGTGCATATAACGGAATAGCATATTGCATGTAAATCCGTTCAATAGATTTTGTGCTCTTTCGAAATACGTTGGCTCAGGACTCATATCAGCAACAAACGGAACACTTGCATATGGAGCAGGATGACTGGTATAATCGTAGACATGGGAAAAATACGGGCAACTAGAGATGAGAAATCTTCTCTCGATTCCGAGAGCTTTTGCGTATCCGAAGCCACAAATATTGAGTTGTTCGGCGAAAAAGCCATCAAAGTTTTGAGCCTTGAGCTCTTGGAAGATGTCATCCATCTCGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACTCCTTTCTCTCCTTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>GAGCTTTTTGGTTTTAAATCTG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TAACTCCTTTCTCTCCTTTCTTCATTTCAGCCTCGAAAACTGGCTCCATTTCCGTAGTATCATCATCCACACCTAATCCTCCAATGTTCACAAGATTTGGAAGAGTTGGTGCTGAGAAGTCAATGATTTCATCTGTCGCCAAAAAGATGATGTCGGCGTTTCGCACGATCTCCGGCACTGATGGGAAATCTTGTCTGAAAATAATCTGAGATGATCAGAAAGCAGATTTAAAACCAAAAAGCTC</canonical_amplicon>
		<polymorphic_amplicon>TAACTCCTTTCTCTCCTTTCTTCATTTCAGCCTCGAAAACTGGCTCCATTTCCGTAGTATCATCATCCACACCYAATCCTCCAATGTTCACAAGATTTGGAAGAGTTGGTGCTGAGAAGTCAATGATTTCATCTGTCGCCAAAAAGATGATGTCGGCGTTTCGCACGATCTCCGGCACTGATGGGAAATCTTGTCTGAAAATAATCTGAGATGATCAGAAAGCAGATTTAAAACCAAAAAGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32133</snp_id>
        <super_contig>c007000836.Contig1</super_contig>
        <contig_pos>8388</contig_pos>
        <strand>+</strand>
        <context>CGAGAGCTTT[C/T]GCGTATCCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATACGGGCAACTAGAGATGAGAAATCTTCTCTCGATTCCGAGAGCTTT</left_flank>
        <right_flank>GCGTATCCGAAGCCACAAATATTGAGTTGTTCGGCGAAAAAGCCATCAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTCCCAGGGAAAATAAGATAACTCCTTTCTCTCCTTTCTTCATTTCAGCCTCGAAAACTGGCTCCATTTCCGTAGTATCATCATCCACACCTAATCCTCCAATGTTCACAAGATTTGGAAGAGTTGGTGCTGAGAAGTCAATGATTTCATCTGTCGCCAAAAAGATGATGTCGGCGTTTCGCACGATCTCCGGCACTGATGGGAAATCTTGTCTGAAAATAATCTGAGATGATCAGAAAGCAGATTTAAAACCAAAAAGCTCACCCGAATTTGTTTCGGAAAATAAACGACAATCGGGTGTGCATATAACGGAATAGCATATTGCATGTAAATCCGTTCAATAGATTTTGTGCTCTTTCGAAATACGTTGGCTCAGGACTCATATCAGCAACAAACGGAACACTTGCATATGGAGCAGGATGACTGGTATAATCGTAGACATGGGAAAAATACGGGCAACTAGAGATGAGAAATCTTCTCTCGATTCCGAGAGCTTTTGCGTATCCGAAGCCACAAATATTGAGTTGTTCGGCGAAAAAGCCATCAAAGTTTTGAGCCTTGAGCTCTTGGAAGATGTCATCCATCTCGAGAAATTCTGGAAAAATATTCAAGTTAAAATTTGGAAAGCGCAGTTTTATTTTTACTACCCTGGAGTTTACTAAATTTTGGTCTGCAGCCACAAAATTTTCAAATTATAAGTCTACATTTTTTTTCAATGAAGTTCACACTATAATTTTTTTTCTCTACCACAGTTTGTTGTTTTCCACCTACCTTCACAAAGTGCATTATAAGCATTTTGGTACATAATATTTCCTTCCACCAATCCCCAAAGTCCAGGATCCTCCATCACAATTTCAGAAAATCCTTGCAGAACATTCCGAAAGCCCTGCATTCCTTTTGGTGTCCGGACAATGGTCTTTTTGACTAGTTTCGCACTTTTTGTAGTGTCCACAATTCCAAGAAAGTCGATTTCGAGTAAGGTCTGGAATTTAGATATT</canonical>
            <polymorphic>GGTTCCCAGGGAAAATAAGATAACTCCTTTCTCTCCTTTCTTCATTTCAGCCTCGAAAACTGGCTCCATTTCCGTAGTATCATCATCCACACCTAATCCTCCAATGTTCACAAGATTTGGAAGAGTTGGTGCTGAGAAGTCAATGATTTCATCTGTCGCCAAAAAGATGATGTCGGCGTTTCGCACGATCTCCGGCACTGATGGGAAATCTTGTCTGAAAATAATCTGAGATGATCAGAAAGCAGATTTAAAACCAAAAAGCTCACCCGAATTTGTTTCGGAAAATAAACGACAATCGGGTGTGCATATAACGGAATAGCATATTGCATGTAAATCCGTTCAATAGATTTTGTGCTCTTTCGAAATACGTTGGCTCAGGACTCATATCAGCAACAAACGGAACACTTGCATATGGAGCAGGATGACTGGTATAATCGTAGACATGGGAAAAATACGGGCAACTAGAGATGAGAAATCTTCTCTCGATTCCGAGAGCTTTYGCGTATCCGAAGCCACAAATATTGAGTTGTTCGGCGAAAAAGCCATCAAAGTTTTGAGCCTTGAGCTCTTGGAAGATGTCATCCATCTCGAGAAATTCTGGAAAAATATTCAAGTTAAAATTTGGAAAGCGCAGTTTTATTTTTACTACCCTGGAGTTTACTAAATTTTGGTCTGCAGCCACAAAATTTTCAAATTATAAGTCTACATTTTTTTTCAATGAAGTTCACACTATAATTTTTTTTCTCTACCACAGTTTGTTGTTTTCCACCTACCTTCACAAAGTGCATTATAAGCATTTTGGTACATAATATTTCCTTCCACCAATCCCCAAAGTCCAGGATCCTCCATCACAATTTCAGAAAATCCTTGCAGAACATTCCGAAAGCCCTGCATTCCTTTTGGTGTCCGGACAATGGTCTTTTTGACTAGTTTCGCACTTTTTGTAGTGTCCACAATTCCAAGAAAGTCGATTTCGAGTAAGGTCTGGAATTTAGATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATGACTGGTATAATCGTAGAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTTAGTAAACTCCAGGGTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGATGACTGGTATAATCGTAGACATGGGAAAAATACGGGCAACTAGAGATGAGAAATCTTCTCTCGATTCCGAGAGCTTTTGCGTATCCGAAGCCACAAATATTGAGTTGTTCGGCGAAAAAGCCATCAAAGTTTTGAGCCTTGAGCTCTTGGAAGATGTCATCCATCTCGAGAAATTCTGGAAAAATATTCAAGTTAAAATTTGGAAAGCGCAGTTTTATTTTTACTACCCTGGAGTTTACTAAATTTT</canonical_amplicon>
		<polymorphic_amplicon>GGATGACTGGTATAATCGTAGACATGGGAAAAATACGGGCAACTAGAGATGAGAAATCTTCTCTCGATTCCGAGAGCTTTYGCGTATCCGAAGCCACAAATATTGAGTTGTTCGGCGAAAAAGCCATCAAAGTTTTGAGCCTTGAGCTCTTGGAAGATGTCATCCATCTCGAGAAATTCTGGAAAAATATTCAAGTTAAAATTTGGAAAGCGCAGTTTTATTTTTACTACCCTGGAGTTTACTAAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32134</snp_id>
        <super_contig>c007000836.Contig1</super_contig>
        <contig_pos>8522</contig_pos>
        <strand></strand>
        <context>GGAAAGCGCA[G/T]TTTTATTTKT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATCTCGAGAAATTCTGGAAAAATATTCAAGTTAAAATTTGGAAAGCGCA</left_flank>
        <right_flank>TTTTATTTTTACTACCCTGGAGTTTACTAAATTTTGGTCTGCAGCCACAA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAGTCAATGATTTCATCTGTCGCCAAAAAGATGATGTCGGCGTTTCGCACGATCTCCGGCACTGATGGGAAATCTTGTCTGAAAATAATCTGAGATGATCAGAAAGCAGATTTAAAACCAAAAAGCTCACCCGAATTTGTTTCGGAAAATAAACGACAATCGGGTGTGCATATAACGGAATAGCATATTGCATGTAAATCCGTTCAATAGATTTTGTGCTCTTTCGAAATACGTTGGCTCAGGACTCATATCAGCAACAAACGGAACACTTGCATATGGAGCAGGATGACTGGTATAATCGTAGACATGGGAAAAATACGGGCAACTAGAGATGAGAAATCTTCTCTCGATTCCGAGAGCTTTTGCGTATCCGAAGCCACAAATATTGAGTTGTTCGGCGAAAAAGCCATCAAAGTTTTGAGCCTTGAGCTCTTGGAAGATGTCATCCATCTCGAGAAATTCTGGAAAAATATTCAAGTTAAAATTTGGAAAGCGCAGTTTTATTTTTACTACCCTGGAGTTTACTAAATTTTGGTCTGCAGCCACAAAATTTTCAAATTATAAGTCTACATTTTTTTTCAATGAAGTTCACACTATAATTTTTTTTCTCTACCACAGTTTGTTGTTTTCCACCTACCTTCACAAAGTGCATTATAAGCATTTTGGTACATAATATTTCCTTCCACCAATCCCCAAAGTCCAGGATCCTCCATCACAATTTCAGAAAATCCTTGCAGAACATTCCGAAAGCCCTGCATTCCTTTTGGTGTCCGGACAATGGTCTTTTTGACTAGTTTCGCACTTTTTGTAGTGTCCACAATTCCAAGAAAGTCGATTTCGAGTAAGGTCTGGAATTTAGATATTTCTCCTGAAACTTTCAAATAACTAAACCTACCACATTGTGTCCGGCTCTTGCTAGTTCATCTGCAATTCTTCCATTCGAGATCAAATGAGATTTACTTGTAGCAGGAGAAAATACGAGTATGTTATAAGCAGAA</canonical>
            <polymorphic>AGAAGTCAATGATTTCATCTGTCGCCAAAAAGATGATGTCGGCGTTTCGCACGATCTCCGGCACTGATGGGAAATCTTGTCTGAAAATAATCTGAGATGATCAGAAAGCAGATTTAAAACCAAAAAGCTCACCCGAATTTGTTTCGGAAAATAAACGACAATCGGGTGTGCATATAACGGAATAGCATATTGCATGTAAATCCGTTCAATAGATTTTGTGCTCTTTCGAAATACGTTGGCTCAGGACTCATATCAGCAACAAACGGAACACTTGCATATGGAGCAGGATGACTGGTATAATCGTAGACATGGGAAAAATACGGGCAACTAGAGATGAGAAATCTTCTCTCGATTCCGAGAGCTTTTGCGTATCCGAAGCCACAAATATTGAGTTGTTCGGCGAAAAAGCCATCAAAGTTTTGAGCCTTGAGCTCTTGGAAGATGTCATCCATCTCGAGAAATTCTGGAAAAATATTCAAGTTAAAATTTGGAAAGCGCAKTTTTATTTTTACTACCCTGGAGTTTACTAAATTTTGGTCTGCAGCCACAAAATTTTCAAATTATAAGTCTACATTTTTTTTCAATGAAGTTCACACTATAATTTTTTTTCTCTACCACAGTTTGTTGTTTTCCACCTACCTTCACAAAGTGCATTATAAGCATTTTGGTACATAATATTTCCTTCCACCAATCCCCAAAGTCCAGGATCCTCCATCACAATTTCAGAAAATCCTTGCAGAACATTCCGAAAGCCCTGCATTCCTTTTGGTGTCCGGACAATGGTCTTTTTGACTAGTTTCGCACTTTTTGTAGTGTCCACAATTCCAAGAAAGTCGATTTCGAGTAAGGTCTGGAATTTAGATATTTCTCCTGAAACTTTCAAATAACTAAACCTACCACATTGTGTCCGGCTCTTGCTAGTTCATCTGCAATTCTTCCATTCGAGATCAAATGAGATTTACTTGTAGCAGGAGAAAATACGAGTATGTTATAAGCAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAAAGTTTTGAGCCTTGAG</pcr_primer_p1>
		<pcr_primer_p2>CTTATAATGCACTTTGTGAAGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCAAAGTTTTGAGCCTTGAGCTCTTGGAAGATGTCATCCATCTCGAGAAATTCTGGAAAAATATTCAAGTTAAAATTTGGAAAGCGCAGTTTTATTTTTACTACCCTGGAGTTTACTAAATTTTGGTCTGCAGCCACAAAATTTTCAAATTATAAGTCTACATTTTTTTTCAATGAAGTTCACACTATAATTTTTTTTCTCTACCACAGTTTGTTGTTTTCCACCTACCTTCACAAAGTGCATTATAAG</canonical_amplicon>
		<polymorphic_amplicon>ATCAAAGTTTTGAGCCTTGAGCTCTTGGAAGATGTCATCCATCTCGAGAAATTCTGGAAAAATATTCAAGTTAAAATTTGGAAAGCGCAKTTTTATTTTTACTACCCTGGAGTTTACTAAATTTTGGTCTGCAGCCACAAAATTTTCAAATTATAAGTCTACATTTTTTTTCAATGAAGTTCACACTATAATTTTTTTTCTCTACCACAGTTTGTTGTTTTCCACCTACCTTCACAAAGTGCATTATAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32135</snp_id>
        <super_contig>c007000836.Contig1</super_contig>
        <contig_pos>8531</contig_pos>
        <strand></strand>
        <context>AKTTTTATTT[T/G]TACTACCCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AAATTCTGGAAAAATATTCAAGTTAAAATTTGGAAAGCGCAGTTTTATTT</left_flank>
        <right_flank>TACTACCCTGGAGTTTACTAAATTTTGGTCTGCAGCCACAAAATTTTCAA</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATTTCATCTGTCGCCAAAAAGATGATGTCGGCGTTTCGCACGATCTCCGGCACTGATGGGAAATCTTGTCTGAAAATAATCTGAGATGATCAGAAAGCAGATTTAAAACCAAAAAGCTCACCCGAATTTGTTTCGGAAAATAAACGACAATCGGGTGTGCATATAACGGAATAGCATATTGCATGTAAATCCGTTCAATAGATTTTGTGCTCTTTCGAAATACGTTGGCTCAGGACTCATATCAGCAACAAACGGAACACTTGCATATGGAGCAGGATGACTGGTATAATCGTAGACATGGGAAAAATACGGGCAACTAGAGATGAGAAATCTTCTCTCGATTCCGAGAGCTTTTGCGTATCCGAAGCCACAAATATTGAGTTGTTCGGCGAAAAAGCCATCAAAGTTTTGAGCCTTGAGCTCTTGGAAGATGTCATCCATCTCGAGAAATTCTGGAAAAATATTCAAGTTAAAATTTGGAAAGCGCAGTTTTATTTTTACTACCCTGGAGTTTACTAAATTTTGGTCTGCAGCCACAAAATTTTCAAATTATAAGTCTACATTTTTTTTCAATGAAGTTCACACTATAATTTTTTTTCTCTACCACAGTTTGTTGTTTTCCACCTACCTTCACAAAGTGCATTATAAGCATTTTGGTACATAATATTTCCTTCCACCAATCCCCAAAGTCCAGGATCCTCCATCACAATTTCAGAAAATCCTTGCAGAACATTCCGAAAGCCCTGCATTCCTTTTGGTGTCCGGACAATGGTCTTTTTGACTAGTTTCGCACTTTTTGTAGTGTCCACAATTCCAAGAAAGTCGATTTCGAGTAAGGTCTGGAATTTAGATATTTCTCCTGAAACTTTCAAATAACTAAACCTACCACATTGTGTCCGGCTCTTGCTAGTTCATCTGCAATTCTTCCATTCGAGATCAAATGAGATTTACTTGTAGCAGGAGAAAATACGAGTATGTTATAAGCAGAAACACTACCA</canonical>
            <polymorphic>TGATTTCATCTGTCGCCAAAAAGATGATGTCGGCGTTTCGCACGATCTCCGGCACTGATGGGAAATCTTGTCTGAAAATAATCTGAGATGATCAGAAAGCAGATTTAAAACCAAAAAGCTCACCCGAATTTGTTTCGGAAAATAAACGACAATCGGGTGTGCATATAACGGAATAGCATATTGCATGTAAATCCGTTCAATAGATTTTGTGCTCTTTCGAAATACGTTGGCTCAGGACTCATATCAGCAACAAACGGAACACTTGCATATGGAGCAGGATGACTGGTATAATCGTAGACATGGGAAAAATACGGGCAACTAGAGATGAGAAATCTTCTCTCGATTCCGAGAGCTTTTGCGTATCCGAAGCCACAAATATTGAGTTGTTCGGCGAAAAAGCCATCAAAGTTTTGAGCCTTGAGCTCTTGGAAGATGTCATCCATCTCGAGAAATTCTGGAAAAATATTCAAGTTAAAATTTGGAAAGCGCAGTTTTATTTKTACTACCCTGGAGTTTACTAAATTTTGGTCTGCAGCCACAAAATTTTCAAATTATAAGTCTACATTTTTTTTCAATGAAGTTCACACTATAATTTTTTTTCTCTACCACAGTTTGTTGTTTTCCACCTACCTTCACAAAGTGCATTATAAGCATTTTGGTACATAATATTTCCTTCCACCAATCCCCAAAGTCCAGGATCCTCCATCACAATTTCAGAAAATCCTTGCAGAACATTCCGAAAGCCCTGCATTCCTTTTGGTGTCCGGACAATGGTCTTTTTGACTAGTTTCGCACTTTTTGTAGTGTCCACAATTCCAAGAAAGTCGATTTCGAGTAAGGTCTGGAATTTAGATATTTCTCCTGAAACTTTCAAATAACTAAACCTACCACATTGTGTCCGGCTCTTGCTAGTTCATCTGCAATTCTTCCATTCGAGATCAAATGAGATTTACTTGTAGCAGGAGAAAATACGAGTATGTTATAAGCAGAAACACTACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAAAGTTTTGAGCCTTGAG</pcr_primer_p1>
		<pcr_primer_p2>CTTATAATGCACTTTGTGAAGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCAAAGTTTTGAGCCTTGAGCTCTTGGAAGATGTCATCCATCTCGAGAAATTCTGGAAAAATATTCAAGTTAAAATTTGGAAAGCGCAGTTTTATTTTTACTACCCTGGAGTTTACTAAATTTTGGTCTGCAGCCACAAAATTTTCAAATTATAAGTCTACATTTTTTTTCAATGAAGTTCACACTATAATTTTTTTTCTCTACCACAGTTTGTTGTTTTCCACCTACCTTCACAAAGTGCATTATAAG</canonical_amplicon>
		<polymorphic_amplicon>ATCAAAGTTTTGAGCCTTGAGCTCTTGGAAGATGTCATCCATCTCGAGAAATTCTGGAAAAATATTCAAGTTAAAATTTGGAAAGCGCAGTTTTATTTKTACTACCCTGGAGTTTACTAAATTTTGGTCTGCAGCCACAAAATTTTCAAATTATAAGTCTACATTTTTTTTCAATGAAGTTCACACTATAATTTTTTTTCTCTACCACAGTTTGTTGTTTTCCACCTACCTTCACAAAGTGCATTATAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32136</snp_id>
        <super_contig>c007100676.Contig2</super_contig>
        <contig_pos>7596</contig_pos>
        <strand>+</strand>
        <context>CACAAAGGCA[A/G]CGGCGGGGGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATAATCTCCAAGTCTGTGCATATTTTGTAGACTTTGAAACACAAAGGCA</left_flank>
        <right_flank>CGGCGGGGGCACTAAATCCGGAGGGACTGGGATTAGTGGACTTTTGGACT</right_flank>
        <qual_score>134</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTTCCCAGACATACAAAGTTGTGTGTCAAAGTCCACAGGATCTCAGACTTATGCAAAAGGATCAGAGGTTTTGAAAATCGGGACCCCCAGACTATGCCTGAACTTTGAGCTCAATTATCTCGCTTTCTTTGAGAGATATCAAAATATTGTATACTAATAAAATATTTACCACAATATCACCTATATTTTATCAGTTGACAGATTTTTGATATCTCTCATAAGAACTGAGATAATTGAGCTCAAAGTGCCTAGAGCCGTTTAGAGCGTGTTTTTGGTCCATGACAAATCTGAAAATCGAGCTTATCCTCTATATAATCCACCCTTCTAAAAGTGCAAATCTCATTTTTCGTTGTCTCTGAAATTCCAGCTGCTTTCTCTGAAACGCGAAGTTTCATCACACAACTATACAAAACCAACACACCAAGCTAAAAACCACCTGGCTAATTTCATAATCTCCAAGTCTGTGCATATTTTGTAGACTTTGAAACACAAAGGCAACGGCGGGGGCACTAAATCCGGAGGGACTGGGATTAGTGGACTTTTGGACTGAAACCAAAAGTTTCGAAAGATGAAGAGTGACTTTGAAAAGCGATCAGTCGTGGGATCATAGGGGATCAAACGATTCTAGTTTTTTTACGCAAATGGGATTATACCACAAAGAGGAGCAAAACTTTTCTGTTAGGATTTCCAAGGATTTTGGGTGTCTAGGAATGGATTTTCCGATCCGATGGATGAAGTTCTCAACTTGTCCCATGTCTTGATTGCTTTGTGAAAGTGTTTCTGTAGGATCATGTTTGGAATAATCTGATTGGAATGTGAGGGATATTGGACCAGACGAATAAGAGGATCTAGTAGTCTTTGGATTTCACAGCCTGCGCAATTCGTCTGCCAGGAAAATGCAAGAAATAGGATCAAGGAGGCCTAACAAGGAAACAACTACCGTAATCCTTGGGTTTTACACTATCACCTTTGAGCTCAATTATCTTGAATCCTGTGAA</canonical>
            <polymorphic>CTGTTCCCAGACATACAAAGTTGTGTGTCAAAGTCCACAGGATCTCAGACTTATGCAAAAGGATCAGAGGTTTTGAAAATCGGGACCCCCAGACTATGCCTGAACTTTGAGCTCAATTATCTCGCTTTCTTTGAGAGATATCAAAATATTGTATACTAATAAAATATTTACCACAATATCACCTATATTTTATCAGTTGACAGATTTTTGATATCTCTCATAAGAACTGAGATAATTGAGCTCAAAGTGCCTAGAGCCGTTTAGAGCGTGTTTTTGGTCCATGACAAATCTGAAAATCGAGCTTATCCTCTATATAATCCACCCTTCTAAAAGTGCAAATCTCATTTTTCGTTGTCTCTGAAATTCCAGCTGCTTTCTCTGAAACGCGAAGTTTCATCACACAACTATACAAAACCAACACACCAAGCTAAAAACCACCTGGCTAATTTCATAATCTCCAAGTCTGTGCATATTTTGTAGACTTTGAAACACAAAGGCARCGGCGGGGGCACTAAATCCGGAGGGACTGGGATTAGTGGACTTTTGGACTGAAACCAAAAGTTTCGAAAGATGAAGAGTGACTTTGAAAAGCGATCAGTCGTGGGATCATAGGGGATCAAACGATTCTAGTTTTTTTACGCAAATGGGATTATACCACAAAGAGGAGCAAAACTTTTCTGTTAGGATTTCCAAGGATTTTGGGTGTCTAGGAATGGATTTTCCGATCCGATGGATGAAGTTCTCAACTTGTCCCATGTCTTGATTGCTTTGTGAAAGTGTTTCTGTAGGATCATGTTTGGAATAATCTGATTGGAATGTGAGGGATATTGGACCAGACGAATAAGAGGATCTAGTAGTCTTTGGATTTCACAGCCTGCGCAATTCGTCTGCCAGGAAAATGCAAGAAATAGGATCAAGGAGGCCTAACAAGGAAACAACTACCGTAATCCTTGGGTTTTACACTATCACCTTTGAGCTCAATTATCTTGAATCCTGTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCATAATCTCCAAGTCTGTG</pcr_primer_p1>
		<pcr_primer_p2>CTTGGAAATCCTAACAGAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTCATAATCTCCAAGTCTGTGCATATTTTGTAGACTTTGAAACACAAAGGCAACGGCGGGGGCACTAAATCCGGAGGGACTGGGATTAGTGGACTTTTGGACTGAAACCAAAAGTTTCGAAAGATGAAGAGTGACTTTGAAAAGCGATCAGTCGTGGGATCATAGGGGATCAAACGATTCTAGTTTTTTTACGCAAATGGGATTATACCACAAAGAGGAGCAAAACTTTTCTGTTAGGATTTCCAAG</canonical_amplicon>
		<polymorphic_amplicon>ATTTCATAATCTCCAAGTCTGTGCATATTTTGTAGACTTTGAAACACAAAGGCARCGGCGGGGGCACTAAATCCGGAGGGACTGGGATTAGTGGACTTTTGGACTGAAACCAAAAGTTTCGAAAGATGAAGAGTGACTTTGAAAAGCGATCAGTCGTGGGATCATAGGGGATCAAACGATTCTAGTTTTTTTACGCAAATGGGATTATACCACAAAGAGGAGCAAAACTTTTCTGTTAGGATTTCCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32137</snp_id>
        <super_contig>c007100676.Contig2</super_contig>
        <contig_pos>7815</contig_pos>
        <strand>+</strand>
        <context>AGGAATGGAT[G/T]TTCCGATCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAACTTTTCTGTTAGGATTTCCAAGGATTTTGGGTGTCTAGGAATGGAT</left_flank>
        <right_flank>TTCCGATCCGATGGATGAAGTTCTCAACTTGTCCCATGTCTTGATTGCTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAGAACTGAGATAATTGAGCTCAAAGTGCCTAGAGCCGTTTAGAGCGTGTTTTTGGTCCATGACAAATCTGAAAATCGAGCTTATCCTCTATATAATCCACCCTTCTAAAAGTGCAAATCTCATTTTTCGTTGTCTCTGAAATTCCAGCTGCTTTCTCTGAAACGCGAAGTTTCATCACACAACTATACAAAACCAACACACCAAGCTAAAAACCACCTGGCTAATTTCATAATCTCCAAGTCTGTGCATATTTTGTAGACTTTGAAACACAAAGGCAACGGCGGGGGCACTAAATCCGGAGGGACTGGGATTAGTGGACTTTTGGACTGAAACCAAAAGTTTCGAAAGATGAAGAGTGACTTTGAAAAGCGATCAGTCGTGGGATCATAGGGGATCAAACGATTCTAGTTTTTTTACGCAAATGGGATTATACCACAAAGAGGAGCAAAACTTTTCTGTTAGGATTTCCAAGGATTTTGGGTGTCTAGGAATGGATTTTCCGATCCGATGGATGAAGTTCTCAACTTGTCCCATGTCTTGATTGCTTTGTGAAAGTGTTTCTGTAGGATCATGTTTGGAATAATCTGATTGGAATGTGAGGGATATTGGACCAGACGAATAAGAGGATCTAGTAGTCTTTGGATTTCACAGCCTGCGCAATTCGTCTGCCAGGAAAATGCAAGAAATAGGATCAAGGAGGCCTAACAAGGAAACAACTACCGTAATCCTTGGGTTTTACACTATCACCTTTGAGCTCAATTATCTTGAATCCTGTGAAAAATATCAAAAATCTGTCAATTGATACAATATTGGTGATATTATGATAAACAATTTATGAATTGACATAATTTGGATATCTTTTACAGGAAATGAGCTGTACAAGCTCAAAGATAGAGACCTTCATATTTTGTTTCTTTTGAATTCACATTTTTCCAATTTCTGGTTTCCCTGATTAAATTTTGACACCAAACTTCTGGAAGTCCCGTTCACCGATCTA</canonical>
            <polymorphic>ATAAGAACTGAGATAATTGAGCTCAAAGTGCCTAGAGCCGTTTAGAGCGTGTTTTTGGTCCATGACAAATCTGAAAATCGAGCTTATCCTCTATATAATCCACCCTTCTAAAAGTGCAAATCTCATTTTTCGTTGTCTCTGAAATTCCAGCTGCTTTCTCTGAAACGCGAAGTTTCATCACACAACTATACAAAACCAACACACCAAGCTAAAAACCACCTGGCTAATTTCATAATCTCCAAGTCTGTGCATATTTTGTAGACTTTGAAACACAAAGGCAACGGCGGGGGCACTAAATCCGGAGGGACTGGGATTAGTGGACTTTTGGACTGAAACCAAAAGTTTCGAAAGATGAAGAGTGACTTTGAAAAGCGATCAGTCGTGGGATCATAGGGGATCAAACGATTCTAGTTTTTTTACGCAAATGGGATTATACCACAAAGAGGAGCAAAACTTTTCTGTTAGGATTTCCAAGGATTTTGGGTGTCTAGGAATGGATKTTCCGATCCGATGGATGAAGTTCTCAACTTGTCCCATGTCTTGATTGCTTTGTGAAAGTGTTTCTGTAGGATCATGTTTGGAATAATCTGATTGGAATGTGAGGGATATTGGACCAGACGAATAAGAGGATCTAGTAGTCTTTGGATTTCACAGCCTGCGCAATTCGTCTGCCAGGAAAATGCAAGAAATAGGATCAAGGAGGCCTAACAAGGAAACAACTACCGTAATCCTTGGGTTTTACACTATCACCTTTGAGCTCAATTATCTTGAATCCTGTGAAAAATATCAAAAATCTGTCAATTGATACAATATTGGTGATATTATGATAAACAATTTATGAATTGACATAATTTGGATATCTTTTACAGGAAATGAGCTGTACAAGCTCAAAGATAGAGACCTTCATATTTTGTTTCTTTTGAATTCACATTTTTCCAATTTCTGGTTTCCCTGATTAAATTTTGACACCAAACTTCTGGAAGTCCCGTTCACCGATCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGTTTCGAAAGATGAAGAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTATTCCAAACATGATCCTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAGTTTCGAAAGATGAAGAGTGACTTTGAAAAGCGATCAGTCGTGGGATCATAGGGGATCAAACGATTCTAGTTTTTTTACGCAAATGGGATTATACCACAAAGAGGAGCAAAACTTTTCTGTTAGGATTTCCAAGGATTTTGGGTGTCTAGGAATGGATTTTCCGATCCGATGGATGAAGTTCTCAACTTGTCCCATGTCTTGATTGCTTTGTGAAAGTGTTTCTGTAGGATCATGTTTGGAATAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGTTTCGAAAGATGAAGAGTGACTTTGAAAAGCGATCAGTCGTGGGATCATAGGGGATCAAACGATTCTAGTTTTTTTACGCAAATGGGATTATACCACAAAGAGGAGCAAAACTTTTCTGTTAGGATTTCCAAGGATTTTGGGTGTCTAGGAATGGATKTTCCGATCCGATGGATGAAGTTCTCAACTTGTCCCATGTCTTGATTGCTTTGTGAAAGTGTTTCTGTAGGATCATGTTTGGAATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32138</snp_id>
        <super_contig>c007100676.Contig2</super_contig>
        <contig_pos>8001</contig_pos>
        <strand>+</strand>
        <context>GAAAATGCAA[A/G]AAATAGGATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGTCTTTGGATTTCACAGCCTGCGCAATTCGTCTGCCAGGAAAATGCAA</left_flank>
        <right_flank>AAATAGGATCAAGGAGGCCTAACAAGGAAACAACTACCGTAATCCTTGGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATACAAAACCAACACACCAAGCTAAAAACCACCTGGCTAATTTCATAATCTCCAAGTCTGTGCATATTTTGTAGACTTTGAAACACAAAGGCAACGGCGGGGGCACTAAATCCGGAGGGACTGGGATTAGTGGACTTTTGGACTGAAACCAAAAGTTTCGAAAGATGAAGAGTGACTTTGAAAAGCGATCAGTCGTGGGATCATAGGGGATCAAACGATTCTAGTTTTTTTACGCAAATGGGATTATACCACAAAGAGGAGCAAAACTTTTCTGTTAGGATTTCCAAGGATTTTGGGTGTCTAGGAATGGATTTTCCGATCCGATGGATGAAGTTCTCAACTTGTCCCATGTCTTGATTGCTTTGTGAAAGTGTTTCTGTAGGATCATGTTTGGAATAATCTGATTGGAATGTGAGGGATATTGGACCAGACGAATAAGAGGATCTAGTAGTCTTTGGATTTCACAGCCTGCGCAATTCGTCTGCCAGGAAAATGCAAGAAATAGGATCAAGGAGGCCTAACAAGGAAACAACTACCGTAATCCTTGGGTTTTACACTATCACCTTTGAGCTCAATTATCTTGAATCCTGTGAAAAATATCAAAAATCTGTCAATTGATACAATATTGGTGATATTATGATAAACAATTTATGAATTGACATAATTTGGATATCTTTTACAGGAAATGAGCTGTACAAGCTCAAAGATAGAGACCTTCATATTTTGTTTCTTTTGAATTCACATTTTTCCAATTTCTGGTTTCCCTGATTAAATTTTGACACCAAACTTCTGGAAGTCCCGTTCACCGATCTACTTTCAGCTTTCTTTTTCAAATAATCTGATGTTTCAACATCTGAAAATAAATTTTATTTCAGATCTATGTTGCTGAAATCTGAAATTCCAAGTAGAAAAAAAAATCTGGCAACATACATCAGAACTATTCTTTTTTCCAAAATAGCCTCTTTCTGATGTTTCAGGCTTCAACCCACACAATAATTT</canonical>
            <polymorphic>TATACAAAACCAACACACCAAGCTAAAAACCACCTGGCTAATTTCATAATCTCCAAGTCTGTGCATATTTTGTAGACTTTGAAACACAAAGGCAACGGCGGGGGCACTAAATCCGGAGGGACTGGGATTAGTGGACTTTTGGACTGAAACCAAAAGTTTCGAAAGATGAAGAGTGACTTTGAAAAGCGATCAGTCGTGGGATCATAGGGGATCAAACGATTCTAGTTTTTTTACGCAAATGGGATTATACCACAAAGAGGAGCAAAACTTTTCTGTTAGGATTTCCAAGGATTTTGGGTGTCTAGGAATGGATTTTCCGATCCGATGGATGAAGTTCTCAACTTGTCCCATGTCTTGATTGCTTTGTGAAAGTGTTTCTGTAGGATCATGTTTGGAATAATCTGATTGGAATGTGAGGGATATTGGACCAGACGAATAAGAGGATCTAGTAGTCTTTGGATTTCACAGCCTGCGCAATTCGTCTGCCAGGAAAATGCAARAAATAGGATCAAGGAGGCCTAACAAGGAAACAACTACCGTAATCCTTGGGTTTTACACTATCACCTTTGAGCTCAATTATCTTGAATCCTGTGAAAAATATCAAAAATCTGTCAATTGATACAATATTGGTGATATTATGATAAACAATTTATGAATTGACATAATTTGGATATCTTTTACAGGAAATGAGCTGTACAAGCTCAAAGATAGAGACCTTCATATTTTGTTTCTTTTGAATTCACATTTTTCCAATTTCTGGTTTCCCTGATTAAATTTTGACACCAAACTTCTGGAAGTCCCGTTCACCGATCTACTTTCAGCTTTCTTTTTCAAATAATCTGATGTTTCAACATCTGAAAATAAATTTTATTTCAGATCTATGTTGCTGAAATCTGAAATTCCAAGTAGAAAAAAAAATCTGGCAACATACATCAGAACTATTCTTTTTTCCAAAATAGCCTCTTTCTGATGTTTCAGGCTTCAACCCACACAATAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTAGTCTTTGGATTTCACAGC</pcr_primer_p1>
		<pcr_primer_p2>AAGAAACAAAATATGAAGGTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>TAGTAGTCTTTGGATTTCACAGCCTGCGCAATTCGTCTGCCAGGAAAATGCAAGAAATAGGATCAAGGAGGCCTAACAAGGAAACAACTACCGTAATCCTTGGGTTTTACACTATCACCTTTGAGCTCAATTATCTTGAATCCTGTGAAAAATATCAAAAATCTGTCAATTGATACAATATTGGTGATATTATGATAAACAATTTATGAATTGACATAATTTGGATATCTTTTACAGGAAATGAGCTGTACAAGCTCAAAGATAGAGACCTTCATATTTTGTTTCTT</canonical_amplicon>
		<polymorphic_amplicon>TAGTAGTCTTTGGATTTCACAGCCTGCGCAATTCGTCTGCCAGGAAAATGCAARAAATAGGATCAAGGAGGCCTAACAAGGAAACAACTACCGTAATCCTTGGGTTTTACACTATCACCTTTGAGCTCAATTATCTTGAATCCTGTGAAAAATATCAAAAATCTGTCAATTGATACAATATTGGTGATATTATGATAAACAATTTATGAATTGACATAATTTGGATATCTTTTACAGGAAATGAGCTGTACAAGCTCAAAGATAGAGACCTTCATATTTTGTTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32139</snp_id>
        <super_contig>c007100676.Contig2</super_contig>
        <contig_pos>8052</contig_pos>
        <strand>+</strand>
        <context>AATCCTTGGG[C/T]TTTAcactat</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATAGGATCAAGGAGGCCTAACAAGGAAACAACTACCGTAATCCTTGGG</left_flank>
        <right_flank>TTTACACTATCACCTTTGAGCTCAATTATCTTGAATCCTGTGAAAAATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAAGTCTGTGCATATTTTGTAGACTTTGAAACACAAAGGCAACGGCGGGGGCACTAAATCCGGAGGGACTGGGATTAGTGGACTTTTGGACTGAAACCAAAAGTTTCGAAAGATGAAGAGTGACTTTGAAAAGCGATCAGTCGTGGGATCATAGGGGATCAAACGATTCTAGTTTTTTTACGCAAATGGGATTATACCACAAAGAGGAGCAAAACTTTTCTGTTAGGATTTCCAAGGATTTTGGGTGTCTAGGAATGGATTTTCCGATCCGATGGATGAAGTTCTCAACTTGTCCCATGTCTTGATTGCTTTGTGAAAGTGTTTCTGTAGGATCATGTTTGGAATAATCTGATTGGAATGTGAGGGATATTGGACCAGACGAATAAGAGGATCTAGTAGTCTTTGGATTTCACAGCCTGCGCAATTCGTCTGCCAGGAAAATGCAAGAAATAGGATCAAGGAGGCCTAACAAGGAAACAACTACCGTAATCCTTGGGTTTTACACTATCACCTTTGAGCTCAATTATCTTGAATCCTGTGAAAAATATCAAAAATCTGTCAATTGATACAATATTGGTGATATTATGATAAACAATTTATGAATTGACATAATTTGGATATCTTTTACAGGAAATGAGCTGTACAAGCTCAAAGATAGAGACCTTCATATTTTGTTTCTTTTGAATTCACATTTTTCCAATTTCTGGTTTCCCTGATTAAATTTTGACACCAAACTTCTGGAAGTCCCGTTCACCGATCTACTTTCAGCTTTCTTTTTCAAATAATCTGATGTTTCAACATCTGAAAATAAATTTTATTTCAGATCTATGTTGCTGAAATCTGAAATTCCAAGTAGAAAAAAAAATCTGGCAACATACATCAGAACTATTCTTTTTTCCAAAATAGCCTCTTTCTGATGTTTCAGGCTTCAACCCACACAATAATTTTATAAATATTATGCAAATTCACCTGTCTGGGGATTTTTATTGGAATTTCCC</canonical>
            <polymorphic>TCCAAGTCTGTGCATATTTTGTAGACTTTGAAACACAAAGGCAACGGCGGGGGCACTAAATCCGGAGGGACTGGGATTAGTGGACTTTTGGACTGAAACCAAAAGTTTCGAAAGATGAAGAGTGACTTTGAAAAGCGATCAGTCGTGGGATCATAGGGGATCAAACGATTCTAGTTTTTTTACGCAAATGGGATTATACCACAAAGAGGAGCAAAACTTTTCTGTTAGGATTTCCAAGGATTTTGGGTGTCTAGGAATGGATTTTCCGATCCGATGGATGAAGTTCTCAACTTGTCCCATGTCTTGATTGCTTTGTGAAAGTGTTTCTGTAGGATCATGTTTGGAATAATCTGATTGGAATGTGAGGGATATTGGACCAGACGAATAAGAGGATCTAGTAGTCTTTGGATTTCACAGCCTGCGCAATTCGTCTGCCAGGAAAATGCAAGAAATAGGATCAAGGAGGCCTAACAAGGAAACAACTACCGTAATCCTTGGGYTTTACACTATCACCTTTGAGCTCAATTATCTTGAATCCTGTGAAAAATATCAAAAATCTGTCAATTGATACAATATTGGTGATATTATGATAAACAATTTATGAATTGACATAATTTGGATATCTTTTACAGGAAATGAGCTGTACAAGCTCAAAGATAGAGACCTTCATATTTTGTTTCTTTTGAATTCACATTTTTCCAATTTCTGGTTTCCCTGATTAAATTTTGACACCAAACTTCTGGAAGTCCCGTTCACCGATCTACTTTCAGCTTTCTTTTTCAAATAATCTGATGTTTCAACATCTGAAAATAAATTTTATTTCAGATCTATGTTGCTGAAATCTGAAATTCCAAGTAGAAAAAAAAATCTGGCAACATACATCAGAACTATTCTTTTTTCCAAAATAGCCTCTTTCTGATGTTTCAGGCTTCAACCCACACAATAATTTTATAAATATTATGCAAATTCACCTGTCTGGGGATTTTTATTGGAATTTCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTAGTCTTTGGATTTCACAGC</pcr_primer_p1>
		<pcr_primer_p2>AAGAAACAAAATATGAAGGTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>TAGTAGTCTTTGGATTTCACAGCCTGCGCAATTCGTCTGCCAGGAAAATGCAAGAAATAGGATCAAGGAGGCCTAACAAGGAAACAACTACCGTAATCCTTGGGTTTTACACTATCACCTTTGAGCTCAATTATCTTGAATCCTGTGAAAAATATCAAAAATCTGTCAATTGATACAATATTGGTGATATTATGATAAACAATTTATGAATTGACATAATTTGGATATCTTTTACAGGAAATGAGCTGTACAAGCTCAAAGATAGAGACCTTCATATTTTGTTTCTT</canonical_amplicon>
		<polymorphic_amplicon>TAGTAGTCTTTGGATTTCACAGCCTGCGCAATTCGTCTGCCAGGAAAATGCAAGAAATAGGATCAAGGAGGCCTAACAAGGAAACAACTACCGTAATCCTTGGGYTTTACACTATCACCTTTGAGCTCAATTATCTTGAATCCTGTGAAAAATATCAAAAATCTGTCAATTGATACAATATTGGTGATATTATGATAAACAATTTATGAATTGACATAATTTGGATATCTTTTACAGGAAATGAGCTGTACAAGCTCAAAGATAGAGACCTTCATATTTTGTTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32140</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>39327</contig_pos>
        <strand>+</strand>
        <context>AGAGAGAGAG[A/T]GTGAGCATAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTGGATTCTCTTTGAAGGAAACGGTTTTGGGTCGAAGGAGAGAGAGAG</left_flank>
        <right_flank>GTGAGCATATAAGCATATTCTCTCCCATATCAAGTACTCGAAACGGGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAGCACTCTCATAGAATGACCCCTCCAGAATCTTTCAACTTTGAGCCAATTTATCTCGGTTCCTGTGAATGATATGAAAAAGTGATCAACTGATAATCACTTATCAAAATGTCACTAATATTTTGTTAGTTGACCACTTTTTTCTATCTTTTACAGGAAGTGAGATAAATGGGCTGAAAATGAACGTATACGGTTGGCTTCGAACATTTACGGTAATTTGCAAAAAAAAAAATTCTGAAAATTTGGAAAATAGAGTCTAGCAGATGAAATAGTAATAATAATAATAATAATAATAATAATAATAATCTTAAGCTGATGCGGAAATTGATGAAGAAGAAGTGATATACTGAATTAATGTCAAGGAATACCCCAAATATTTGGGTATGCATTATGTGCGGGAATGTGCAATGCTCTCACTTATATACACAAACAACTCGGCGGCGGACGTTTTGGATTCTCTTTGAAGGAAACGGTTTTGGGTCGAAGGAGAGAGAGAGAGTGAGCATATAAGCATATTCTCTCCCATATCAAGTACTCGAAACGGGAATGTGTGAATATTTTAAACAACGATCTGTAAGCATTACTTCTTTCTCGCTCTCGCCCCATTTTGTATGCTTTGGCCGTACCAAAAAAAAAGAGGTGTTTGTATACTGACACTGTACTAAATATTGTGTACGAAAATTACGAACAGAAAATTGAACAAAAAATGCGGGGGGAAATTTGGGGAACGGGTGAATAACAACGAAAATTGTACAACTGGTGTTATTCAGAATAGCTGAGGGACATCTGGATAAACAGACACATCGAATGAGTTCTAGTTTTTTTTGTTTTGCGAAATTTAGAAAATGCAATTCAAATAATGCCAAAAGTCTAGGAAAATCTGGAAAGTTTAGAGAAGTCAGAAACATGAAAATTCTAATGATTATCAAGCTTGACCCAATTTAACTTGGTTCCTGTGAAAGATATCAAAAATGTGTGACAGGATAAAATAATTATCA</canonical>
            <polymorphic>ACAAGCACTCTCATAGAATGACCCCTCCAGAATCTTTCAACTTTGAGCCAATTTATCTCGGTTCCTGTGAATGATATGAAAAAGTGATCAACTGATAATCACTTATCAAAATGTCACTAATATTTTGTTAGTTGACCACTTTTTTCTATCTTTTACAGGAAGTGAGATAAATGGGCTGAAAATGAACGTATACGGTTGGCTTCGAACATTTACGGTAATTTGCAAAAAAAAAAATTCTGAAAATTTGGAAAATAGAGTCTAGCAGATGAAATAGTAATAATAATAATAATAATAATAATAATAATAATCTTAAGCTGATGCGGAAATTGATGAAGAAGAAGTGATATACTGAATTAATGTCAAGGAATACCCCAAATATTTGGGTATGCATTATGTGCGGGAATGTGCAATGCTCTCACTTATATACACAAACAACTCGGCGGCGGACGTTTTGGATTCTCTTTGAAGGAAACGGTTTTGGGTCGAAGGAGAGAGAGAGWGTGAGCATATAAGCATATTCTCTCCCATATCAAGTACTCGAAACGGGAATGTGTGAATATTTTAAACAACGATCTGTAAGCATTACTTCTTTCTCGCTCTCGCCCCATTTTGTATGCTTTGGCCGTACCAAAAAAAAAGAGGTGTTTGTATACTGACACTGTACTAAATATTGTGTACGAAAATTACGAACAGAAAATTGAACAAAAAATGCGGGGGGAAATTTGGGGAACGGGTGAATAACAACGAAAATTGTACAACTGGTGTTATTCAGAATAGCTGAGGGACATCTGGATAAACAGACACATCGAATGAGTTCTAGTTTTTTTTGTTTTGCGAAATTTAGAAAATGCAATTCAAATAATGCCAAAAGTCTAGGAAAATCTGGAAAGTTTAGAGAAGTCAGAAACATGAAAATTCTAATGATTATCAAGCTTGACCCAATTTAACTTGGTTCCTGTGAAAGATATCAAAAATGTGTGACAGGATAAAATAATTATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTCTCACTTATATACACAAACA</pcr_primer_p1>
		<pcr_primer_p2>TGTCAGTATACAAACACCTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGCTCTCACTTATATACACAAACAACTCGGCGGCGGACGTTTTGGATTCTCTTTGAAGGAAACGGTTTTGGGTCGAAGGAGAGAGAGAGAGTGAGCATATAAGCATATTCTCTCCCATATCAAGTACTCGAAACGGGAATGTGTGAATATTTTAAACAACGATCTGTAAGCATTACTTCTTTCTCGCTCTCGCCCCATTTTGTATGCTTTGGCCGTACCAAAAAAAAAGAGGTGTTTGTATACTGACA</canonical_amplicon>
		<polymorphic_amplicon>TGCTCTCACTTATATACACAAACAACTCGGCGGCGGACGTTTTGGATTCTCTTTGAAGGAAACGGTTTTGGGTCGAAGGAGAGAGAGAGWGTGAGCATATAAGCATATTCTCTCCCATATCAAGTACTCGAAACGGGAATGTGTGAATATTTTAAACAACGATCTGTAAGCATTACTTCTTTCTCGCTCTCGCCCCATTTTGTATGCTTTGGCCGTACCAAAAAAAAAGAGGTGTTTGTATACTGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32141</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>39376</contig_pos>
        <strand>+</strand>
        <context>CGAAACGGGA[A/T]TGTGTGAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGTGAGCATATAAGCATATTCTCTCCCATATCAAGTACTCGAAACGGGA</left_flank>
        <right_flank>TGTGTGAATATTTTAAACAACGATCTGTAAGCATTACTTCTTTCTCGCTC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTATCTCGGTTCCTGTGAATGATATGAAAAAGTGATCAACTGATAATCACTTATCAAAATGTCACTAATATTTTGTTAGTTGACCACTTTTTTCTATCTTTTACAGGAAGTGAGATAAATGGGCTGAAAATGAACGTATACGGTTGGCTTCGAACATTTACGGTAATTTGCAAAAAAAAAAATTCTGAAAATTTGGAAAATAGAGTCTAGCAGATGAAATAGTAATAATAATAATAATAATAATAATAATAATAATCTTAAGCTGATGCGGAAATTGATGAAGAAGAAGTGATATACTGAATTAATGTCAAGGAATACCCCAAATATTTGGGTATGCATTATGTGCGGGAATGTGCAATGCTCTCACTTATATACACAAACAACTCGGCGGCGGACGTTTTGGATTCTCTTTGAAGGAAACGGTTTTGGGTCGAAGGAGAGAGAGAGAGTGAGCATATAAGCATATTCTCTCCCATATCAAGTACTCGAAACGGGAATGTGTGAATATTTTAAACAACGATCTGTAAGCATTACTTCTTTCTCGCTCTCGCCCCATTTTGTATGCTTTGGCCGTACCAAAAAAAAAGAGGTGTTTGTATACTGACACTGTACTAAATATTGTGTACGAAAATTACGAACAGAAAATTGAACAAAAAATGCGGGGGGAAATTTGGGGAACGGGTGAATAACAACGAAAATTGTACAACTGGTGTTATTCAGAATAGCTGAGGGACATCTGGATAAACAGACACATCGAATGAGTTCTAGTTTTTTTTGTTTTGCGAAATTTAGAAAATGCAATTCAAATAATGCCAAAAGTCTAGGAAAATCTGGAAAGTTTAGAGAAGTCAGAAACATGAAAATTCTAATGATTATCAAGCTTGACCCAATTTAACTTGGTTCCTGTGAAAGATATCAAAAATGTGTGACAGGATAAAATAATTATCACAAAATCAGCAATATTTTATTAATTGACAACTTTTTGGTATCTTTCACA</canonical>
            <polymorphic>AATTTATCTCGGTTCCTGTGAATGATATGAAAAAGTGATCAACTGATAATCACTTATCAAAATGTCACTAATATTTTGTTAGTTGACCACTTTTTTCTATCTTTTACAGGAAGTGAGATAAATGGGCTGAAAATGAACGTATACGGTTGGCTTCGAACATTTACGGTAATTTGCAAAAAAAAAAATTCTGAAAATTTGGAAAATAGAGTCTAGCAGATGAAATAGTAATAATAATAATAATAATAATAATAATAATAATCTTAAGCTGATGCGGAAATTGATGAAGAAGAAGTGATATACTGAATTAATGTCAAGGAATACCCCAAATATTTGGGTATGCATTATGTGCGGGAATGTGCAATGCTCTCACTTATATACACAAACAACTCGGCGGCGGACGTTTTGGATTCTCTTTGAAGGAAACGGTTTTGGGTCGAAGGAGAGAGAGAGAGTGAGCATATAAGCATATTCTCTCCCATATCAAGTACTCGAAACGGGAWTGTGTGAATATTTTAAACAACGATCTGTAAGCATTACTTCTTTCTCGCTCTCGCCCCATTTTGTATGCTTTGGCCGTACCAAAAAAAAAGAGGTGTTTGTATACTGACACTGTACTAAATATTGTGTACGAAAATTACGAACAGAAAATTGAACAAAAAATGCGGGGGGAAATTTGGGGAACGGGTGAATAACAACGAAAATTGTACAACTGGTGTTATTCAGAATAGCTGAGGGACATCTGGATAAACAGACACATCGAATGAGTTCTAGTTTTTTTTGTTTTGCGAAATTTAGAAAATGCAATTCAAATAATGCCAAAAGTCTAGGAAAATCTGGAAAGTTTAGAGAAGTCAGAAACATGAAAATTCTAATGATTATCAAGCTTGACCCAATTTAACTTGGTTCCTGTGAAAGATATCAAAAATGTGTGACAGGATAAAATAATTATCACAAAATCAGCAATATTTTATTAATTGACAACTTTTTGGTATCTTTCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTCTCACTTATATACACAAACA</pcr_primer_p1>
		<pcr_primer_p2>TGTCAGTATACAAACACCTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGCTCTCACTTATATACACAAACAACTCGGCGGCGGACGTTTTGGATTCTCTTTGAAGGAAACGGTTTTGGGTCGAAGGAGAGAGAGAGAGTGAGCATATAAGCATATTCTCTCCCATATCAAGTACTCGAAACGGGAATGTGTGAATATTTTAAACAACGATCTGTAAGCATTACTTCTTTCTCGCTCTCGCCCCATTTTGTATGCTTTGGCCGTACCAAAAAAAAAGAGGTGTTTGTATACTGACA</canonical_amplicon>
		<polymorphic_amplicon>TGCTCTCACTTATATACACAAACAACTCGGCGGCGGACGTTTTGGATTCTCTTTGAAGGAAACGGTTTTGGGTCGAAGGAGAGAGAGAGAGTGAGCATATAAGCATATTCTCTCCCATATCAAGTACTCGAAACGGGAWTGTGTGAATATTTTAAACAACGATCTGTAAGCATTACTTCTTTCTCGCTCTCGCCCCATTTTGTATGCTTTGGCCGTACCAAAAAAAAAGAGGTGTTTGTATACTGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32142</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>39391</contig_pos>
        <strand>+</strand>
        <context>TGAATATTTT[A/T]AAMAACGATY</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATATTCTCTCCCATATCAAGTACTCGAAACGGGAATGTGTGAATATTTT</left_flank>
        <right_flank>AACAACGATCTGTAAGCATTACTTCTTTCTCGCTCTCGCCCCATTTTGTA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTGAATGATATGAAAAAGTGATCAACTGATAATCACTTATCAAAATGTCACTAATATTTTGTTAGTTGACCACTTTTTTCTATCTTTTACAGGAAGTGAGATAAATGGGCTGAAAATGAACGTATACGGTTGGCTTCGAACATTTACGGTAATTTGCAAAAAAAAAAATTCTGAAAATTTGGAAAATAGAGTCTAGCAGATGAAATAGTAATAATAATAATAATAATAATAATAATAATAATCTTAAGCTGATGCGGAAATTGATGAAGAAGAAGTGATATACTGAATTAATGTCAAGGAATACCCCAAATATTTGGGTATGCATTATGTGCGGGAATGTGCAATGCTCTCACTTATATACACAAACAACTCGGCGGCGGACGTTTTGGATTCTCTTTGAAGGAAACGGTTTTGGGTCGAAGGAGAGAGAGAGAGTGAGCATATAAGCATATTCTCTCCCATATCAAGTACTCGAAACGGGAATGTGTGAATATTTTAAACAACGATCTGTAAGCATTACTTCTTTCTCGCTCTCGCCCCATTTTGTATGCTTTGGCCGTACCAAAAAAAAAGAGGTGTTTGTATACTGACACTGTACTAAATATTGTGTACGAAAATTACGAACAGAAAATTGAACAAAAAATGCGGGGGGAAATTTGGGGAACGGGTGAATAACAACGAAAATTGTACAACTGGTGTTATTCAGAATAGCTGAGGGACATCTGGATAAACAGACACATCGAATGAGTTCTAGTTTTTTTTGTTTTGCGAAATTTAGAAAATGCAATTCAAATAATGCCAAAAGTCTAGGAAAATCTGGAAAGTTTAGAGAAGTCAGAAACATGAAAATTCTAATGATTATCAAGCTTGACCCAATTTAACTTGGTTCCTGTGAAAGATATCAAAAATGTGTGACAGGATAAAATAATTATCACAAAATCAGCAATATTTTATTAATTGACAACTTTTTGGTATCTTTCACAGAAATCGAAATAATT</canonical>
            <polymorphic>CTGTGAATGATATGAAAAAGTGATCAACTGATAATCACTTATCAAAATGTCACTAATATTTTGTTAGTTGACCACTTTTTTCTATCTTTTACAGGAAGTGAGATAAATGGGCTGAAAATGAACGTATACGGTTGGCTTCGAACATTTACGGTAATTTGCAAAAAAAAAAATTCTGAAAATTTGGAAAATAGAGTCTAGCAGATGAAATAGTAATAATAATAATAATAATAATAATAATAATAATCTTAAGCTGATGCGGAAATTGATGAAGAAGAAGTGATATACTGAATTAATGTCAAGGAATACCCCAAATATTTGGGTATGCATTATGTGCGGGAATGTGCAATGCTCTCACTTATATACACAAACAACTCGGCGGCGGACGTTTTGGATTCTCTTTGAAGGAAACGGTTTTGGGTCGAAGGAGAGAGAGAGAGTGAGCATATAAGCATATTCTCTCCCATATCAAGTACTCGAAACGGGAATGTGTGAATATTTTWAACAACGATCTGTAAGCATTACTTCTTTCTCGCTCTCGCCCCATTTTGTATGCTTTGGCCGTACCAAAAAAAAAGAGGTGTTTGTATACTGACACTGTACTAAATATTGTGTACGAAAATTACGAACAGAAAATTGAACAAAAAATGCGGGGGGAAATTTGGGGAACGGGTGAATAACAACGAAAATTGTACAACTGGTGTTATTCAGAATAGCTGAGGGACATCTGGATAAACAGACACATCGAATGAGTTCTAGTTTTTTTTGTTTTGCGAAATTTAGAAAATGCAATTCAAATAATGCCAAAAGTCTAGGAAAATCTGGAAAGTTTAGAGAAGTCAGAAACATGAAAATTCTAATGATTATCAAGCTTGACCCAATTTAACTTGGTTCCTGTGAAAGATATCAAAAATGTGTGACAGGATAAAATAATTATCACAAAATCAGCAATATTTTATTAATTGACAACTTTTTGGTATCTTTCACAGAAATCGAAATAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>382 246 208 76 44 44</canonical_bands>
                <polymorphic_bands>590 246 76 44 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAGCATATTCTCTCCCATATCA</pcr_primer_p1>
		<pcr_primer_p2>TGTACAATTTTCGTTGTTATTCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TAAGCATATTCTCTCCCATATCAAGTACTCGAAACGGGAATGTGTGAATATTTTAAACAACGATCTGTAAGCATTACTTCTTTCTCGCTCTCGCCCCATTTTGTATGCTTTGGCCGTACCAAAAAAAAAGAGGTGTTTGTATACTGACACTGTACTAAATATTGTGTACGAAAATTACGAACAGAAAATTGAACAAAAAATGCGGGGGGAAATTTGGGGAACGGGTGAATAACAACGAAAATTGTACA</canonical_amplicon>
		<polymorphic_amplicon>TAAGCATATTCTCTCCCATATCAAGTACTCGAAACGGGAATGTGTGAATATTTTWAACAACGATCTGTAAGCATTACTTCTTTCTCGCTCTCGCCCCATTTTGTATGCTTTGGCCGTACCAAAAAAAAAGAGGTGTTTGTATACTGACACTGTACTAAATATTGTGTACGAAAATTACGAACAGAAAATTGAACAAAAAATGCGGGGGGAAATTTGGGGAACGGGTGAATAACAACGAAAATTGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32143</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>39394</contig_pos>
        <strand>+</strand>
        <context>ATATTTTWAA[A/C]AACGATYTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTCTCTCCCATATCAAGTACTCGAAACGGGAATGTGTGAATATTTTAAA</left_flank>
        <right_flank>AACGATCTGTAAGCATTACTTCTTTCTCGCTCTCGCCCCATTTTGTATGC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAATGATATGAAAAAGTGATCAACTGATAATCACTTATCAAAATGTCACTAATATTTTGTTAGTTGACCACTTTTTTCTATCTTTTACAGGAAGTGAGATAAATGGGCTGAAAATGAACGTATACGGTTGGCTTCGAACATTTACGGTAATTTGCAAAAAAAAAAATTCTGAAAATTTGGAAAATAGAGTCTAGCAGATGAAATAGTAATAATAATAATAATAATAATAATAATAATAATCTTAAGCTGATGCGGAAATTGATGAAGAAGAAGTGATATACTGAATTAATGTCAAGGAATACCCCAAATATTTGGGTATGCATTATGTGCGGGAATGTGCAATGCTCTCACTTATATACACAAACAACTCGGCGGCGGACGTTTTGGATTCTCTTTGAAGGAAACGGTTTTGGGTCGAAGGAGAGAGAGAGAGTGAGCATATAAGCATATTCTCTCCCATATCAAGTACTCGAAACGGGAATGTGTGAATATTTTAAACAACGATCTGTAAGCATTACTTCTTTCTCGCTCTCGCCCCATTTTGTATGCTTTGGCCGTACCAAAAAAAAAGAGGTGTTTGTATACTGACACTGTACTAAATATTGTGTACGAAAATTACGAACAGAAAATTGAACAAAAAATGCGGGGGGAAATTTGGGGAACGGGTGAATAACAACGAAAATTGTACAACTGGTGTTATTCAGAATAGCTGAGGGACATCTGGATAAACAGACACATCGAATGAGTTCTAGTTTTTTTTGTTTTGCGAAATTTAGAAAATGCAATTCAAATAATGCCAAAAGTCTAGGAAAATCTGGAAAGTTTAGAGAAGTCAGAAACATGAAAATTCTAATGATTATCAAGCTTGACCCAATTTAACTTGGTTCCTGTGAAAGATATCAAAAATGTGTGACAGGATAAAATAATTATCACAAAATCAGCAATATTTTATTAATTGACAACTTTTTGGTATCTTTCACAGAAATCGAAATAATTGGG</canonical>
            <polymorphic>TGAATGATATGAAAAAGTGATCAACTGATAATCACTTATCAAAATGTCACTAATATTTTGTTAGTTGACCACTTTTTTCTATCTTTTACAGGAAGTGAGATAAATGGGCTGAAAATGAACGTATACGGTTGGCTTCGAACATTTACGGTAATTTGCAAAAAAAAAAATTCTGAAAATTTGGAAAATAGAGTCTAGCAGATGAAATAGTAATAATAATAATAATAATAATAATAATAATAATCTTAAGCTGATGCGGAAATTGATGAAGAAGAAGTGATATACTGAATTAATGTCAAGGAATACCCCAAATATTTGGGTATGCATTATGTGCGGGAATGTGCAATGCTCTCACTTATATACACAAACAACTCGGCGGCGGACGTTTTGGATTCTCTTTGAAGGAAACGGTTTTGGGTCGAAGGAGAGAGAGAGAGTGAGCATATAAGCATATTCTCTCCCATATCAAGTACTCGAAACGGGAATGTGTGAATATTTTAAAMAACGATCTGTAAGCATTACTTCTTTCTCGCTCTCGCCCCATTTTGTATGCTTTGGCCGTACCAAAAAAAAAGAGGTGTTTGTATACTGACACTGTACTAAATATTGTGTACGAAAATTACGAACAGAAAATTGAACAAAAAATGCGGGGGGAAATTTGGGGAACGGGTGAATAACAACGAAAATTGTACAACTGGTGTTATTCAGAATAGCTGAGGGACATCTGGATAAACAGACACATCGAATGAGTTCTAGTTTTTTTTGTTTTGCGAAATTTAGAAAATGCAATTCAAATAATGCCAAAAGTCTAGGAAAATCTGGAAAGTTTAGAGAAGTCAGAAACATGAAAATTCTAATGATTATCAAGCTTGACCCAATTTAACTTGGTTCCTGTGAAAGATATCAAAAATGTGTGACAGGATAAAATAATTATCACAAAATCAGCAATATTTTATTAATTGACAACTTTTTGGTATCTTTCACAGAAATCGAAATAATTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGCATATTCTCTCCCATATCA</pcr_primer_p1>
		<pcr_primer_p2>TGTACAATTTTCGTTGTTATTCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TAAGCATATTCTCTCCCATATCAAGTACTCGAAACGGGAATGTGTGAATATTTTAAACAACGATCTGTAAGCATTACTTCTTTCTCGCTCTCGCCCCATTTTGTATGCTTTGGCCGTACCAAAAAAAAAGAGGTGTTTGTATACTGACACTGTACTAAATATTGTGTACGAAAATTACGAACAGAAAATTGAACAAAAAATGCGGGGGGAAATTTGGGGAACGGGTGAATAACAACGAAAATTGTACA</canonical_amplicon>
		<polymorphic_amplicon>TAAGCATATTCTCTCCCATATCAAGTACTCGAAACGGGAATGTGTGAATATTTTAAAMAACGATCTGTAAGCATTACTTCTTTCTCGCTCTCGCCCCATTTTGTATGCTTTGGCCGTACCAAAAAAAAAGAGGTGTTTGTATACTGACACTGTACTAAATATTGTGTACGAAAATTACGAACAGAAAATTGAACAAAAAATGCGGGGGGAAATTTGGGGAACGGGTGAATAACAACGAAAATTGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32144</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>39401</contig_pos>
        <strand>+</strand>
        <context>WAAMAACGAT[C/T]TGTAAGCATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCATATCAAGTACTCGAAACGGGAATGTGTGAATATTTTAAACAACGAT</left_flank>
        <right_flank>TGTAAGCATTACTTCTTTCTCGCTCTCGCCCCATTTTGTATGCTTTGGCC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGAAAAAGTGATCAACTGATAATCACTTATCAAAATGTCACTAATATTTTGTTAGTTGACCACTTTTTTCTATCTTTTACAGGAAGTGAGATAAATGGGCTGAAAATGAACGTATACGGTTGGCTTCGAACATTTACGGTAATTTGCAAAAAAAAAAATTCTGAAAATTTGGAAAATAGAGTCTAGCAGATGAAATAGTAATAATAATAATAATAATAATAATAATAATAATCTTAAGCTGATGCGGAAATTGATGAAGAAGAAGTGATATACTGAATTAATGTCAAGGAATACCCCAAATATTTGGGTATGCATTATGTGCGGGAATGTGCAATGCTCTCACTTATATACACAAACAACTCGGCGGCGGACGTTTTGGATTCTCTTTGAAGGAAACGGTTTTGGGTCGAAGGAGAGAGAGAGAGTGAGCATATAAGCATATTCTCTCCCATATCAAGTACTCGAAACGGGAATGTGTGAATATTTTAAACAACGATCTGTAAGCATTACTTCTTTCTCGCTCTCGCCCCATTTTGTATGCTTTGGCCGTACCAAAAAAAAAGAGGTGTTTGTATACTGACACTGTACTAAATATTGTGTACGAAAATTACGAACAGAAAATTGAACAAAAAATGCGGGGGGAAATTTGGGGAACGGGTGAATAACAACGAAAATTGTACAACTGGTGTTATTCAGAATAGCTGAGGGACATCTGGATAAACAGACACATCGAATGAGTTCTAGTTTTTTTTGTTTTGCGAAATTTAGAAAATGCAATTCAAATAATGCCAAAAGTCTAGGAAAATCTGGAAAGTTTAGAGAAGTCAGAAACATGAAAATTCTAATGATTATCAAGCTTGACCCAATTTAACTTGGTTCCTGTGAAAGATATCAAAAATGTGTGACAGGATAAAATAATTATCACAAAATCAGCAATATTTTATTAATTGACAACTTTTTGGTATCTTTCACAGAAATCGAAATAATTGGGTTCAATG</canonical>
            <polymorphic>TATGAAAAAGTGATCAACTGATAATCACTTATCAAAATGTCACTAATATTTTGTTAGTTGACCACTTTTTTCTATCTTTTACAGGAAGTGAGATAAATGGGCTGAAAATGAACGTATACGGTTGGCTTCGAACATTTACGGTAATTTGCAAAAAAAAAAATTCTGAAAATTTGGAAAATAGAGTCTAGCAGATGAAATAGTAATAATAATAATAATAATAATAATAATAATAATCTTAAGCTGATGCGGAAATTGATGAAGAAGAAGTGATATACTGAATTAATGTCAAGGAATACCCCAAATATTTGGGTATGCATTATGTGCGGGAATGTGCAATGCTCTCACTTATATACACAAACAACTCGGCGGCGGACGTTTTGGATTCTCTTTGAAGGAAACGGTTTTGGGTCGAAGGAGAGAGAGAGAGTGAGCATATAAGCATATTCTCTCCCATATCAAGTACTCGAAACGGGAATGTGTGAATATTTTAAACAACGATYTGTAAGCATTACTTCTTTCTCGCTCTCGCCCCATTTTGTATGCTTTGGCCGTACCAAAAAAAAAGAGGTGTTTGTATACTGACACTGTACTAAATATTGTGTACGAAAATTACGAACAGAAAATTGAACAAAAAATGCGGGGGGAAATTTGGGGAACGGGTGAATAACAACGAAAATTGTACAACTGGTGTTATTCAGAATAGCTGAGGGACATCTGGATAAACAGACACATCGAATGAGTTCTAGTTTTTTTTGTTTTGCGAAATTTAGAAAATGCAATTCAAATAATGCCAAAAGTCTAGGAAAATCTGGAAAGTTTAGAGAAGTCAGAAACATGAAAATTCTAATGATTATCAAGCTTGACCCAATTTAACTTGGTTCCTGTGAAAGATATCAAAAATGTGTGACAGGATAAAATAATTATCACAAAATCAGCAATATTTTATTAATTGACAACTTTTTGGTATCTTTCACAGAAATCGAAATAATTGGGTTCAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>504 485 11</canonical_bands>
                <polymorphic_bands>989 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAGCATATTCTCTCCCATATCA</pcr_primer_p1>
		<pcr_primer_p2>TGTACAATTTTCGTTGTTATTCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TAAGCATATTCTCTCCCATATCAAGTACTCGAAACGGGAATGTGTGAATATTTTAAACAACGATCTGTAAGCATTACTTCTTTCTCGCTCTCGCCCCATTTTGTATGCTTTGGCCGTACCAAAAAAAAAGAGGTGTTTGTATACTGACACTGTACTAAATATTGTGTACGAAAATTACGAACAGAAAATTGAACAAAAAATGCGGGGGGAAATTTGGGGAACGGGTGAATAACAACGAAAATTGTACA</canonical_amplicon>
		<polymorphic_amplicon>TAAGCATATTCTCTCCCATATCAAGTACTCGAAACGGGAATGTGTGAATATTTTAAACAACGATYTGTAAGCATTACTTCTTTCTCGCTCTCGCCCCATTTTGTATGCTTTGGCCGTACCAAAAAAAAAGAGGTGTTTGTATACTGACACTGTACTAAATATTGTGTACGAAAATTACGAACAGAAAATTGAACAAAAAATGCGGGGGGAAATTTGGGGAACGGGTGAATAACAACGAAAATTGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32145</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>39607</contig_pos>
        <strand>+</strand>
        <context>CAGAATAGCT[A/G]AGGGACATCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGGGTGAATAACAACGAAAATTGTACAACTGGTGTTATTCAGAATAGCT</left_flank>
        <right_flank>AGGGACATCTGGATAAACAGACACATCGAATGAGTTCTAGTTTTTTTTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATAATAATAATAATAATAATAATAATCTTAAGCTGATGCGGAAATTGATGAAGAAGAAGTGATATACTGAATTAATGTCAAGGAATACCCCAAATATTTGGGTATGCATTATGTGCGGGAATGTGCAATGCTCTCACTTATATACACAAACAACTCGGCGGCGGACGTTTTGGATTCTCTTTGAAGGAAACGGTTTTGGGTCGAAGGAGAGAGAGAGAGTGAGCATATAAGCATATTCTCTCCCATATCAAGTACTCGAAACGGGAATGTGTGAATATTTTAAACAACGATCTGTAAGCATTACTTCTTTCTCGCTCTCGCCCCATTTTGTATGCTTTGGCCGTACCAAAAAAAAAGAGGTGTTTGTATACTGACACTGTACTAAATATTGTGTACGAAAATTACGAACAGAAAATTGAACAAAAAATGCGGGGGGAAATTTGGGGAACGGGTGAATAACAACGAAAATTGTACAACTGGTGTTATTCAGAATAGCTGAGGGACATCTGGATAAACAGACACATCGAATGAGTTCTAGTTTTTTTTGTTTTGCGAAATTTAGAAAATGCAATTCAAATAATGCCAAAAGTCTAGGAAAATCTGGAAAGTTTAGAGAAGTCAGAAACATGAAAATTCTAATGATTATCAAGCTTGACCCAATTTAACTTGGTTCCTGTGAAAGATATCAAAAATGTGTGACAGGATAAAATAATTATCACAAAATCAGCAATATTTTATTAATTGACAACTTTTTGGTATCTTTCACAGAAATCGAAATAATTGGGTTCAATGTTAATGGTGCGGGGCCGCCAAGTTTGACCACATCTATCTCGGTTCCTGTAAGAGGTAGCAAAAAGTTGTCAACTGATATTATGTTTGTCACAATATAAAAAAAAATTTTATTAATTAACCACTTGTCCGTATCTTTTACAGAAATTGAGAAATATTGGCTCAAAGTTGACTTACCGTATTTCCTATTACAGTATAACATCCAATTT</canonical>
            <polymorphic>TAATAATAATAATAATAATAATAATAATCTTAAGCTGATGCGGAAATTGATGAAGAAGAAGTGATATACTGAATTAATGTCAAGGAATACCCCAAATATTTGGGTATGCATTATGTGCGGGAATGTGCAATGCTCTCACTTATATACACAAACAACTCGGCGGCGGACGTTTTGGATTCTCTTTGAAGGAAACGGTTTTGGGTCGAAGGAGAGAGAGAGAGTGAGCATATAAGCATATTCTCTCCCATATCAAGTACTCGAAACGGGAATGTGTGAATATTTTAAACAACGATCTGTAAGCATTACTTCTTTCTCGCTCTCGCCCCATTTTGTATGCTTTGGCCGTACCAAAAAAAAAGAGGTGTTTGTATACTGACACTGTACTAAATATTGTGTACGAAAATTACGAACAGAAAATTGAACAAAAAATGCGGGGGGAAATTTGGGGAACGGGTGAATAACAACGAAAATTGTACAACTGGTGTTATTCAGAATAGCTRAGGGACATCTGGATAAACAGACACATCGAATGAGTTCTAGTTTTTTTTGTTTTGCGAAATTTAGAAAATGCAATTCAAATAATGCCAAAAGTCTAGGAAAATCTGGAAAGTTTAGAGAAGTCAGAAACATGAAAATTCTAATGATTATCAAGCTTGACCCAATTTAACTTGGTTCCTGTGAAAGATATCAAAAATGTGTGACAGGATAAAATAATTATCACAAAATCAGCAATATTTTATTAATTGACAACTTTTTGGTATCTTTCACAGAAATCGAAATAATTGGGTTCAATGTTAATGGTGCGGGGCCGCCAAGTTTGACCACATCTATCTCGGTTCCTGTAAGAGGTAGCAAAAAGTTGTCAACTGATATTATGTTTGTCACAATATAAAAAAAAATTTTATTAATTAACCACTTGTCCGTATCTTTTACAGAAATTGAGAAATATTGGCTCAAAGTTGACTTACCGTATTTCCTATTACAGTATAACATCCAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATATTGTGTACGAAAATTACGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCATGTTTCTGACTTCTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATATTGTGTACGAAAATTACGAACAGAAAATTGAACAAAAAATGCGGGGGGAAATTTGGGGAACGGGTGAATAACAACGAAAATTGTACAACTGGTGTTATTCAGAATAGCTGAGGGACATCTGGATAAACAGACACATCGAATGAGTTCTAGTTTTTTTTGTTTTGCGAAATTTAGAAAATGCAATTCAAATAATGCCAAAAGTCTAGGAAAATCTGGAAAGTTTAGAGAAGTCAGAAACATGAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAATATTGTGTACGAAAATTACGAACAGAAAATTGAACAAAAAATGCGGGGGGAAATTTGGGGAACGGGTGAATAACAACGAAAATTGTACAACTGGTGTTATTCAGAATAGCTRAGGGACATCTGGATAAACAGACACATCGAATGAGTTCTAGTTTTTTTTGTTTTGCGAAATTTAGAAAATGCAATTCAAATAATGCCAAAAGTCTAGGAAAATCTGGAAAGTTTAGAGAAGTCAGAAACATGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32146</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>39698</contig_pos>
        <strand>+</strand>
        <context>AATGCCAAAA[A/G]TCTAGGAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTTTGTTTTGCGAAATTTAGAAAATGCAATTCAAATAATGCCAAAA</left_flank>
        <right_flank>TCTAGGAAAATCTGGAAAGTTTAGAGAAGTCAGAAACATGAAAATTCTAA</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAATATTTGGGTATGCATTATGTGCGGGAATGTGCAATGCTCTCACTTATATACACAAACAACTCGGCGGCGGACGTTTTGGATTCTCTTTGAAGGAAACGGTTTTGGGTCGAAGGAGAGAGAGAGAGTGAGCATATAAGCATATTCTCTCCCATATCAAGTACTCGAAACGGGAATGTGTGAATATTTTAAACAACGATCTGTAAGCATTACTTCTTTCTCGCTCTCGCCCCATTTTGTATGCTTTGGCCGTACCAAAAAAAAAGAGGTGTTTGTATACTGACACTGTACTAAATATTGTGTACGAAAATTACGAACAGAAAATTGAACAAAAAATGCGGGGGGAAATTTGGGGAACGGGTGAATAACAACGAAAATTGTACAACTGGTGTTATTCAGAATAGCTGAGGGACATCTGGATAAACAGACACATCGAATGAGTTCTAGTTTTTTTTGTTTTGCGAAATTTAGAAAATGCAATTCAAATAATGCCAAAAGTCTAGGAAAATCTGGAAAGTTTAGAGAAGTCAGAAACATGAAAATTCTAATGATTATCAAGCTTGACCCAATTTAACTTGGTTCCTGTGAAAGATATCAAAAATGTGTGACAGGATAAAATAATTATCACAAAATCAGCAATATTTTATTAATTGACAACTTTTTGGTATCTTTCACAGAAATCGAAATAATTGGGTTCAATGTTAATGGTGCGGGGCCGCCAAGTTTGACCACATCTATCTCGGTTCCTGTAAGAGGTAGCAAAAAGTTGTCAACTGATATTATGTTTGTCACAATATAAAAAAAAATTTTATTAATTAACCACTTGTCCGTATCTTTTACAGAAATTGAGAAATATTGGCTCAAAGTTGACTTACCGTATTTCCTATTACAGTATAACATCCAATTTCGAGCTCAATTATCTTGGTTCCTGTGAAAGATATCAGAAAGTTTTGAACTTACAAAATGTTTATCGCAGTATCAAAAATATTTTATTAATT</canonical>
            <polymorphic>CCAAATATTTGGGTATGCATTATGTGCGGGAATGTGCAATGCTCTCACTTATATACACAAACAACTCGGCGGCGGACGTTTTGGATTCTCTTTGAAGGAAACGGTTTTGGGTCGAAGGAGAGAGAGAGAGTGAGCATATAAGCATATTCTCTCCCATATCAAGTACTCGAAACGGGAATGTGTGAATATTTTAAACAACGATCTGTAAGCATTACTTCTTTCTCGCTCTCGCCCCATTTTGTATGCTTTGGCCGTACCAAAAAAAAAGAGGTGTTTGTATACTGACACTGTACTAAATATTGTGTACGAAAATTACGAACAGAAAATTGAACAAAAAATGCGGGGGGAAATTTGGGGAACGGGTGAATAACAACGAAAATTGTACAACTGGTGTTATTCAGAATAGCTGAGGGACATCTGGATAAACAGACACATCGAATGAGTTCTAGTTTTTTTTGTTTTGCGAAATTTAGAAAATGCAATTCAAATAATGCCAAAARTCTAGGAAAATCTGGAAAGTTTAGAGAAGTCAGAAACATGAAAATTCTAATGATTATCAAGCTTGACCCAATTTAACTTGGTTCCTGTGAAAGATATCAAAAATGTGTGACAGGATAAAATAATTATCACAAAATCAGCAATATTTTATTAATTGACAACTTTTTGGTATCTTTCACAGAAATCGAAATAATTGGGTTCAATGTTAATGGTGCGGGGCCGCCAAGTTTGACCACATCTATCTCGGTTCCTGTAAGAGGTAGCAAAAAGTTGTCAACTGATATTATGTTTGTCACAATATAAAAAAAAATTTTATTAATTAACCACTTGTCCGTATCTTTTACAGAAATTGAGAAATATTGGCTCAAAGTTGACTTACCGTATTTCCTATTACAGTATAACATCCAATTTCGAGCTCAATTATCTTGGTTCCTGTGAAAGATATCAGAAAGTTTTGAACTTACAAAATGTTTATCGCAGTATCAAAAATATTTTATTAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACATCGAATGAGTTCTAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TATTTGTATGTCTTTTGGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>707</pcr_amplicon_size>
		<canonical_amplicon>CACATCGAATGAGTTCTAGTTTTTTTTGTTTTGCGAAATTTAGAAAATGCAATTCAAATAATGCCAAAAGTCTAGGAAAATCTGGAAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>CACATCGAATGAGTTCTAGTTTTTTTTGTTTTGCGAAATTTAGAAAATGCAATTCAAATAATGCCAAAARTCTAGGAAAATCTGGAAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32147</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>39760</contig_pos>
        <strand></strand>
        <context>GATTAtcaag[C/T]ttgacccaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGGAAAGTTTAGAGAAGTCAGAAACATGAAAATTCTAATGATTATCAAG</left_flank>
        <right_flank>TTGACCCAATTTAACTTGGTTCCTGTGAAAGATATCAAAAATGTGTGACA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTCGGCGGCGGACGTTTTGGATTCTCTTTGAAGGAAACGGTTTTGGGTCGAAGGAGAGAGAGAGAGTGAGCATATAAGCATATTCTCTCCCATATCAAGTACTCGAAACGGGAATGTGTGAATATTTTAAACAACGATCTGTAAGCATTACTTCTTTCTCGCTCTCGCCCCATTTTGTATGCTTTGGCCGTACCAAAAAAAAAGAGGTGTTTGTATACTGACACTGTACTAAATATTGTGTACGAAAATTACGAACAGAAAATTGAACAAAAAATGCGGGGGGAAATTTGGGGAACGGGTGAATAACAACGAAAATTGTACAACTGGTGTTATTCAGAATAGCTGAGGGACATCTGGATAAACAGACACATCGAATGAGTTCTAGTTTTTTTTGTTTTGCGAAATTTAGAAAATGCAATTCAAATAATGCCAAAAGTCTAGGAAAATCTGGAAAGTTTAGAGAAGTCAGAAACATGAAAATTCTAATGATTATCAAGCTTGACCCAATTTAACTTGGTTCCTGTGAAAGATATCAAAAATGTGTGACAGGATAAAATAATTATCACAAAATCAGCAATATTTTATTAATTGACAACTTTTTGGTATCTTTCACAGAAATCGAAATAATTGGGTTCAATGTTAATGGTGCGGGGCCGCCAAGTTTGACCACATCTATCTCGGTTCCTGTAAGAGGTAGCAAAAAGTTGTCAACTGATATTATGTTTGTCACAATATAAAAAAAAATTTTATTAATTAACCACTTGTCCGTATCTTTTACAGAAATTGAGAAATATTGGCTCAAAGTTGACTTACCGTATTTCCTATTACAGTATAACATCCAATTTCGAGCTCAATTATCTTGGTTCCTGTGAAAGATATCAGAAAGTTTTGAACTTACAAAATGTTTATCGCAGTATCAAAAATATTTTATTAATTGCCAACTTTTAGGTTTATTTTACAGGAACCGAGATAATTGGGCTCAAAATTGTAAGGGGATT</canonical>
            <polymorphic>AACTCGGCGGCGGACGTTTTGGATTCTCTTTGAAGGAAACGGTTTTGGGTCGAAGGAGAGAGAGAGAGTGAGCATATAAGCATATTCTCTCCCATATCAAGTACTCGAAACGGGAATGTGTGAATATTTTAAACAACGATCTGTAAGCATTACTTCTTTCTCGCTCTCGCCCCATTTTGTATGCTTTGGCCGTACCAAAAAAAAAGAGGTGTTTGTATACTGACACTGTACTAAATATTGTGTACGAAAATTACGAACAGAAAATTGAACAAAAAATGCGGGGGGAAATTTGGGGAACGGGTGAATAACAACGAAAATTGTACAACTGGTGTTATTCAGAATAGCTGAGGGACATCTGGATAAACAGACACATCGAATGAGTTCTAGTTTTTTTTGTTTTGCGAAATTTAGAAAATGCAATTCAAATAATGCCAAAAGTCTAGGAAAATCTGGAAAGTTTAGAGAAGTCAGAAACATGAAAATTCTAATGATTATCAAGYTTGACCCAATTTAACTTGGTTCCTGTGAAAGATATCAAAAATGTGTGACAGGATAAAATAATTATCACAAAATCAGCAATATTTTATTAATTGACAACTTTTTGGTATCTTTCACAGAAATCGAAATAATTGGGTTCAATGTTAATGGTGCGGGGCCGCCAAGTTTGACCACATCTATCTCGGTTCCTGTAAGAGGTAGCAAAAAGTTGTCAACTGATATTATGTTTGTCACAATATAAAAAAAAATTTTATTAATTAACCACTTGTCCGTATCTTTTACAGAAATTGAGAAATATTGGCTCAAAGTTGACTTACCGTATTTCCTATTACAGTATAACATCCAATTTCGAGCTCAATTATCTTGGTTCCTGTGAAAGATATCAGAAAGTTTTGAACTTACAAAATGTTTATCGCAGTATCAAAAATATTTTATTAATTGCCAACTTTTAGGTTTATTTTACAGGAACCGAGATAATTGGGCTCAAAATTGTAAGGGGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>352 344 155 149</canonical_bands>
                <polymorphic_bands>507 344 149</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>189 156 155 155 144 129 52 20</canonical_bands>
                <polymorphic_bands>311 189 155 144 129 52 20</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCTGGAAAGTTTAGAGAAGTCA</pcr_primer_p1>
		<pcr_primer_p2>ATTTGTATGTCTTTTGGCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>628</pcr_amplicon_size>
		<canonical_amplicon>AATCTGGAAAGTTTAGAGAAGTCAGAAACATGAAAATTCTAATGATTATCAAGCTTGACCCAATTTAACTTGGTTC</canonical_amplicon>
		<polymorphic_amplicon>AATCTGGAAAGTTTAGAGAAGTCAGAAACATGAAAATTCTAATGATTATCAAGYTTGACCCAATTTAACTTGGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32148</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>48118</contig_pos>
        <strand></strand>
        <context>tttcagaatt[C/G]ccaaatttca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATCATTAAGAATACTTTGGCGAATTTCAGAATTTCCAAATTTCAGAATT</left_flank>
        <right_flank>CCAAATTTCAAAATTTCAGAATTTCAAGATTTCAGAATTTCAAAATTTCA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAATGAAGATATCTTCCAAGGAATGTGTCTTGAGGGAATCTAGTTTCACCAAGTTTGAATTTCGGATATGTTGGATATCCGAAAAGAGTCTCCGGTTGAGACATTGTTATCTGAAAAATGGGAATTACAAAAAACTGTATTAGAAGATATCTTTTACAAGAACCGAGATAAATGAACTTAAAATTGACTGTTTGGGGACTTTCAATTACAGATTTTACAGTCTAAAGAAGCAATTTAATTCTAAGTGAAAGAGAAACTTGAGAGGAATTCAAAATTAATTTGATAAATGAGAAATTTAAAGGTTCGTCTCTGGAAACTATTGAAATACTTCGAAACTCAAGTGTTTCATTCAGAATTTCAAAATAAAAAATTTCAGAAGCTAAGAATTTCGGAATATCAAAATCTCAGAATCTCAGTTTCTCAGAACCTGAAAATATCAGGATTTCAGAATCATTAAGAATACTTTGGCGAATTTCAGAATTTCCAAATTTCAGAATTCCCAAATTTCAAAATTTCAGAATTTCAAGATTTCAGAATTTCAAAATTTCAAAATTTCAAAATTTCAAAAAAAATTCAGTTTTGGAACTGATGTTTTGCAAAAAAGGAAAAGCGGGAAACAAAACAATAAAACAAAAGAAAAAAGTGAAGTTTTATCGAGGGATCATCACAGAATTTTGGAAAAATGAAGAGTATAAAAAGAAAGGGTGAAGAAGAAACGTAAGTTCAAATCTTGCAGCAATCGATTGAGCAAAAACTTCAATTTCTGCATCATATGATTCCGAAACAGGGTACCGGAAAGAGGTGACTGTTCAGAAGGACACATATTCTCTACCTCGAATGGAAAATCACCTCCTATATGGGAACATTAATTTTGGGTTGATAGATATCGAATAACACGATTGAGCCTTCAATTTTATCTTTTGAACATATCATTAAACATTCTACATATAATAATTATATCATCCTTATCATCATTCTTATAATAAATAAATGAAATCG</canonical>
            <polymorphic>ACAATGAAGATATCTTCCAAGGAATGTGTCTTGAGGGAATCTAGTTTCACCAAGTTTGAATTTCGGATATGTTGGATATCCGAAAAGAGTCTCCGGTTGAGACATTGTTATCTGAAAAATGGGAATTACAAAAAACTGTATTAGAAGATATCTTTTACAAGAACCGAGATAAATGAACTTAAAATTGACTGTTTGGGGACTTTCAATTACAGATTTTACAGTCTAAAGAAGCAATTTAATTCTAAGTGAAAGAGAAACTTGAGAGGAATTCAAAATTAATTTGATAAATGAGAAATTTAAAGGTTCGTCTCTGGAAACTATTGAAATACTTCGAAACTCAAGTGTTTCATTCAGAATTTCAAAATAAAAAATTTCAGAAGCTAAGAATTTCGGAATATCAAAATCTCAGAATCTCAGTTTCTCAGAACCTGAAAATATCAGGATTTCAGAATCATTAAGAATACTTTGGCGAATTTCAGAATTTCCAAATTTCAGAATTSCCAAATTTCAAAATTTCAGAATTTCAAGATTTCAGAATTTCAAAATTTCAAAATTTCAAAATTTCAAAAAAAATTCAGTTTTGGAACTGATGTTTTGCAAAAAAGGAAAAGCGGGAAACAAAACAATAAAACAAAAGAAAAAAGTGAAGTTTTATCGAGGGATCATCACAGAATTTTGGAAAAATGAAGAGTATAAAAAGAAAGGGTGAAGAAGAAACGTAAGTTCAAATCTTGCAGCAATCGATTGAGCAAAAACTTCAATTTCTGCATCATATGATTCCGAAACAGGGTACCGGAAAGAGGTGACTGTTCAGAAGGACACATATTCTCTACCTCGAATGGAAAATCACCTCCTATATGGGAACATTAATTTTGGGTTGATAGATATCGAATAACACGATTGAGCCTTCAATTTTATCTTTTGAACATATCATTAAACATTCTACATATAATAATTATATCATCCTTATCATCATTCTTATAATAAATAAATGAAATCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>329 208 100 86 61 58 27 16 16 15 12 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>329 208 100 86 61 58 27 16 16 16 15 12 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>505 266 229</canonical_bands>
                <polymorphic_bands>734 266</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCGTCTCTGGAAACTATTGA</pcr_primer_p1>
		<pcr_primer_p2>TCTTTTGTTTTATTGTTTTGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>335</pcr_amplicon_size>
		<canonical_amplicon>TTCGTCTCTGGAAACTATTGAAATACTTCGAAACTCAAGTGTTTCATTCAGAATTTCAAAATAAAAAATTTCAGAAGCTAAGAATTTCGGAATATCAAAATCTCAGAATCTCAGTTTCTCAGAACCTGAAAATATCAGGATTTCAGAATCATTAAGAATACTTTGGCGAATTTCAGAATTTCCAAATTTCAGAATTCCCAAATTTCAAAATTTCAGAATTTCAAGATTTCAGAATTTCAAAATTTCAAAATTTCAAAATTTCAAAAAAAATTCAGTTTTGGAACTGATGTTTTGCAAAAAAGGAAAAGCGGGAAACAAAACAATAAAACAAAAGA</canonical_amplicon>
		<polymorphic_amplicon>TTCGTCTCTGGAAACTATTGAAATACTTCGAAACTCAAGTGTTTCATTCAGAATTTCAAAATAAAAAATTTCAGAAGCTAAGAATTTCGGAATATCAAAATCTCAGAATCTCAGTTTCTCAGAACCTGAAAATATCAGGATTTCAGAATCATTAAGAATACTTTGGCGAATTTCAGAATTTCCAAATTTCAGAATTSCCAAATTTCAAAATTTCAGAATTTCAAGATTTCAGAATTTCAAAATTTCAAAATTTCAAAATTTCAAAAAAAATTCAGTTTTGGAACTGATGTTTTGCAAAAAAGGAAAAGCGGGAAACAAAACAATAAAACAAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32149</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>48130</contig_pos>
        <strand></strand>
        <context>caaatttcaa[A/C]atttcagaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TACTTTGGCGAATTTCAGAATTTCCAAATTTCAGAATTCCCAAATTTCAA</left_flank>
        <right_flank>ATTTCAGAATTTCAAGATTTCAGAATTTCAAAATTTCAAAATTTCAAAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTCCAAGGAATGTGTCTTGAGGGAATCTAGTTTCACCAAGTTTGAATTTCGGATATGTTGGATATCCGAAAAGAGTCTCCGGTTGAGACATTGTTATCTGAAAAATGGGAATTACAAAAAACTGTATTAGAAGATATCTTTTACAAGAACCGAGATAAATGAACTTAAAATTGACTGTTTGGGGACTTTCAATTACAGATTTTACAGTCTAAAGAAGCAATTTAATTCTAAGTGAAAGAGAAACTTGAGAGGAATTCAAAATTAATTTGATAAATGAGAAATTTAAAGGTTCGTCTCTGGAAACTATTGAAATACTTCGAAACTCAAGTGTTTCATTCAGAATTTCAAAATAAAAAATTTCAGAAGCTAAGAATTTCGGAATATCAAAATCTCAGAATCTCAGTTTCTCAGAACCTGAAAATATCAGGATTTCAGAATCATTAAGAATACTTTGGCGAATTTCAGAATTTCCAAATTTCAGAATTCCCAAATTTCAAAATTTCAGAATTTCAAGATTTCAGAATTTCAAAATTTCAAAATTTCAAAATTTCAAAAAAAATTCAGTTTTGGAACTGATGTTTTGCAAAAAAGGAAAAGCGGGAAACAAAACAATAAAACAAAAGAAAAAAGTGAAGTTTTATCGAGGGATCATCACAGAATTTTGGAAAAATGAAGAGTATAAAAAGAAAGGGTGAAGAAGAAACGTAAGTTCAAATCTTGCAGCAATCGATTGAGCAAAAACTTCAATTTCTGCATCATATGATTCCGAAACAGGGTACCGGAAAGAGGTGACTGTTCAGAAGGACACATATTCTCTACCTCGAATGGAAAATCACCTCCTATATGGGAACATTAATTTTGGGTTGATAGATATCGAATAACACGATTGAGCCTTCAATTTTATCTTTTGAACATATCATTAAACATTCTACATATAATAATTATATCATCCTTATCATCATTCTTATAATAAATAAATGAAATCGCATCTCTTTAAC</canonical>
            <polymorphic>TCTTCCAAGGAATGTGTCTTGAGGGAATCTAGTTTCACCAAGTTTGAATTTCGGATATGTTGGATATCCGAAAAGAGTCTCCGGTTGAGACATTGTTATCTGAAAAATGGGAATTACAAAAAACTGTATTAGAAGATATCTTTTACAAGAACCGAGATAAATGAACTTAAAATTGACTGTTTGGGGACTTTCAATTACAGATTTTACAGTCTAAAGAAGCAATTTAATTCTAAGTGAAAGAGAAACTTGAGAGGAATTCAAAATTAATTTGATAAATGAGAAATTTAAAGGTTCGTCTCTGGAAACTATTGAAATACTTCGAAACTCAAGTGTTTCATTCAGAATTTCAAAATAAAAAATTTCAGAAGCTAAGAATTTCGGAATATCAAAATCTCAGAATCTCAGTTTCTCAGAACCTGAAAATATCAGGATTTCAGAATCATTAAGAATACTTTGGCGAATTTCAGAATTTCCAAATTTCAGAATTCCCAAATTTCAAMATTTCAGAATTTCAAGATTTCAGAATTTCAAAATTTCAAAATTTCAAAATTTCAAAAAAAATTCAGTTTTGGAACTGATGTTTTGCAAAAAAGGAAAAGCGGGAAACAAAACAATAAAACAAAAGAAAAAAGTGAAGTTTTATCGAGGGATCATCACAGAATTTTGGAAAAATGAAGAGTATAAAAAGAAAGGGTGAAGAAGAAACGTAAGTTCAAATCTTGCAGCAATCGATTGAGCAAAAACTTCAATTTCTGCATCATATGATTCCGAAACAGGGTACCGGAAAGAGGTGACTGTTCAGAAGGACACATATTCTCTACCTCGAATGGAAAATCACCTCCTATATGGGAACATTAATTTTGGGTTGATAGATATCGAATAACACGATTGAGCCTTCAATTTTATCTTTTGAACATATCATTAAACATTCTACATATAATAATTATATCATCCTTATCATCATTCTTATAATAAATAAATGAAATCGCATCTCTTTAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>341 208 100 86 61 46 27 16 16 15 12 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>341 208 100 86 61 46 27 16 16 16 15 12 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>109 100 88 86 65 61 59 59 46 43 42 29 28 22 16 16 16 15 12 8 8 8 8 8 8 8 8 8 7 5 4</canonical_bands>
                <polymorphic_bands>109 100 88 86 65 61 59 59 46 43 42 29 28 22 16 16 16 16 15 12 8 8 8 8 8 8 8 7 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCGTCTCTGGAAACTATTGA</pcr_primer_p1>
		<pcr_primer_p2>TCTTTTGTTTTATTGTTTTGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>335</pcr_amplicon_size>
		<canonical_amplicon>TTCGTCTCTGGAAACTATTGAAATACTTCGAAACTCAAGTGTTTCATTCAGAATTTCAAAATAAAAAATTTCAGAAGCTAAGAATTTCGGAATATCAAAATCTCAGAATCTCAGTTTCTCAGAACCTGAAAATATCAGGATTTCAGAATCATTAAGAATACTTTGGCGAATTTCAGAATTTCCAAATTTCAGAATTCCCAAATTTCAAAATTTCAGAATTTCAAGATTTCAGAATTTCAAAATTTCAAAATTTCAAAATTTCAAAAAAAATTCAGTTTTGGAACTGATGTTTTGCAAAAAAGGAAAAGCGGGAAACAAAACAATAAAACAAAAGA</canonical_amplicon>
		<polymorphic_amplicon>TTCGTCTCTGGAAACTATTGAAATACTTCGAAACTCAAGTGTTTCATTCAGAATTTCAAAATAAAAAATTTCAGAAGCTAAGAATTTCGGAATATCAAAATCTCAGAATCTCAGTTTCTCAGAACCTGAAAATATCAGGATTTCAGAATCATTAAGAATACTTTGGCGAATTTCAGAATTTCCAAATTTCAGAATTCCCAAATTTCAAMATTTCAGAATTTCAAGATTTCAGAATTTCAAAATTTCAAAATTTCAAAATTTCAAAAAAAATTCAGTTTTGGAACTGATGTTTTGCAAAAAAGGAAAAGCGGGAAACAAAACAATAAAACAAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32150</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>48144</contig_pos>
        <strand></strand>
        <context>tcagaatttc[A/G]agatttcaga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAGAATTTCCAAATTTCAGAATTCCCAAATTTCAAAATTTCAGAATTTC</left_flank>
        <right_flank>AGATTTCAGAATTTCAAAATTTCAAAATTTCAAAATTTCAAAAAAAATTC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCTTGAGGGAATCTAGTTTCACCAAGTTTGAATTTCGGATATGTTGGATATCCGAAAAGAGTCTCCGGTTGAGACATTGTTATCTGAAAAATGGGAATTACAAAAAACTGTATTAGAAGATATCTTTTACAAGAACCGAGATAAATGAACTTAAAATTGACTGTTTGGGGACTTTCAATTACAGATTTTACAGTCTAAAGAAGCAATTTAATTCTAAGTGAAAGAGAAACTTGAGAGGAATTCAAAATTAATTTGATAAATGAGAAATTTAAAGGTTCGTCTCTGGAAACTATTGAAATACTTCGAAACTCAAGTGTTTCATTCAGAATTTCAAAATAAAAAATTTCAGAAGCTAAGAATTTCGGAATATCAAAATCTCAGAATCTCAGTTTCTCAGAACCTGAAAATATCAGGATTTCAGAATCATTAAGAATACTTTGGCGAATTTCAGAATTTCCAAATTTCAGAATTCCCAAATTTCAAAATTTCAGAATTTCAAGATTTCAGAATTTCAAAATTTCAAAATTTCAAAATTTCAAAAAAAATTCAGTTTTGGAACTGATGTTTTGCAAAAAAGGAAAAGCGGGAAACAAAACAATAAAACAAAAGAAAAAAGTGAAGTTTTATCGAGGGATCATCACAGAATTTTGGAAAAATGAAGAGTATAAAAAGAAAGGGTGAAGAAGAAACGTAAGTTCAAATCTTGCAGCAATCGATTGAGCAAAAACTTCAATTTCTGCATCATATGATTCCGAAACAGGGTACCGGAAAGAGGTGACTGTTCAGAAGGACACATATTCTCTACCTCGAATGGAAAATCACCTCCTATATGGGAACATTAATTTTGGGTTGATAGATATCGAATAACACGATTGAGCCTTCAATTTTATCTTTTGAACATATCATTAAACATTCTACATATAATAATTATATCATCCTTATCATCATTCTTATAATAAATAAATGAAATCGCATCTCTTTAACTGTTTCTTTGTCCT</canonical>
            <polymorphic>TGTCTTGAGGGAATCTAGTTTCACCAAGTTTGAATTTCGGATATGTTGGATATCCGAAAAGAGTCTCCGGTTGAGACATTGTTATCTGAAAAATGGGAATTACAAAAAACTGTATTAGAAGATATCTTTTACAAGAACCGAGATAAATGAACTTAAAATTGACTGTTTGGGGACTTTCAATTACAGATTTTACAGTCTAAAGAAGCAATTTAATTCTAAGTGAAAGAGAAACTTGAGAGGAATTCAAAATTAATTTGATAAATGAGAAATTTAAAGGTTCGTCTCTGGAAACTATTGAAATACTTCGAAACTCAAGTGTTTCATTCAGAATTTCAAAATAAAAAATTTCAGAAGCTAAGAATTTCGGAATATCAAAATCTCAGAATCTCAGTTTCTCAGAACCTGAAAATATCAGGATTTCAGAATCATTAAGAATACTTTGGCGAATTTCAGAATTTCCAAATTTCAGAATTCCCAAATTTCAAAATTTCAGAATTTCRAGATTTCAGAATTTCAAAATTTCAAAATTTCAAAATTTCAAAAAAAATTCAGTTTTGGAACTGATGTTTTGCAAAAAAGGAAAAGCGGGAAACAAAACAATAAAACAAAAGAAAAAAGTGAAGTTTTATCGAGGGATCATCACAGAATTTTGGAAAAATGAAGAGTATAAAAAGAAAGGGTGAAGAAGAAACGTAAGTTCAAATCTTGCAGCAATCGATTGAGCAAAAACTTCAATTTCTGCATCATATGATTCCGAAACAGGGTACCGGAAAGAGGTGACTGTTCAGAAGGACACATATTCTCTACCTCGAATGGAAAATCACCTCCTATATGGGAACATTAATTTTGGGTTGATAGATATCGAATAACACGATTGAGCCTTCAATTTTATCTTTTGAACATATCATTAAACATTCTACATATAATAATTATATCATCCTTATCATCATTCTTATAATAAATAAATGAAATCGCATCTCTTTAACTGTTTCTTTGTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGTCTCTGGAAACTATTGA</pcr_primer_p1>
		<pcr_primer_p2>TCTTTTGTTTTATTGTTTTGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>335</pcr_amplicon_size>
		<canonical_amplicon>TTCGTCTCTGGAAACTATTGAAATACTTCGAAACTCAAGTGTTTCATTCAGAATTTCAAAATAAAAAATTTCAGAAGCTAAGAATTTCGGAATATCAAAATCTCAGAATCTCAGTTTCTCAGAACCTGAAAATATCAGGATTTCAGAATCATTAAGAATACTTTGGCGAATTTCAGAATTTCCAAATTTCAGAATTCCCAAATTTCAAAATTTCAGAATTTCAAGATTTCAGAATTTCAAAATTTCAAAATTTCAAAATTTCAAAAAAAATTCAGTTTTGGAACTGATGTTTTGCAAAAAAGGAAAAGCGGGAAACAAAACAATAAAACAAAAGA</canonical_amplicon>
		<polymorphic_amplicon>TTCGTCTCTGGAAACTATTGAAATACTTCGAAACTCAAGTGTTTCATTCAGAATTTCAAAATAAAAAATTTCAGAAGCTAAGAATTTCGGAATATCAAAATCTCAGAATCTCAGTTTCTCAGAACCTGAAAATATCAGGATTTCAGAATCATTAAGAATACTTTGGCGAATTTCAGAATTTCCAAATTTCAGAATTCCCAAATTTCAAAATTTCAGAATTTCRAGATTTCAGAATTTCAAAATTTCAAAATTTCAAAATTTCAAAAAAAATTCAGTTTTGGAACTGATGTTTTGCAAAAAAGGAAAAGCGGGAAACAAAACAATAAAACAAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32151</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>49779</contig_pos>
        <strand>+</strand>
        <context>TTCATAGAAA[A/G]CATGAGACTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTGGAAGAAGGAAAGAATGAGGATACTTCAGAATGAACTTCATAGAAA</left_flank>
        <right_flank>CATGAGACTTTCAAACACATTTTTTGAAATATTTCAGTAGTCAAAAAAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTGGGGTAAACCAAACAATATGAAAATCCAATTAGAAAATTTTCGTATAGAGTGTGAAACACAACAATTTCAAATTGATACCAGCCGTAAAAAAGAGAGAAACAGTGAGAAAAGAAGAAGAAACAGAAACCAATTGGTCAGTACATTGAATAGTGTAAAACAGAAAGAGAAGAGAAATAGTGTTGAAGGTCATGAGACACAGGCAATCATTTGACAGTTGTTGTCTTTTTGATAAACGGAAAATGGAAAGAAAATGGGTGGGAAGTTGAATTGAAAAATAAAAAAGAGAAGGAGAAAAAGAAAACGGAGTCATTTTGGAAGGGAGATGGATATAAATTGTATATACGAGAGTGTAGGAGATTTAGAGAAAAAGGGAAAAAAAGAAGGAGCATAAAAAAAGGCCTAGAGATGGGAAAGCAGAAGCCAACTGGGACCTTTTTCGTTAAGTTGGAAGAAGGAAAGAATGAGGATACTTCAGAATGAACTTCATAGAAAACATGAGACTTTCAAACACATTTTTTGAAATATTTCAGTAGTCAAAAAAATGAAAAATTTGTCAAAATTCGTTGTTCCAAGTCCTACCATTCTTTCGGACCTTTTTGTACTGAAAAAGTGAAAAACTGGTGCATTCCAGAAATTGGCAAAAATCAGAAAAACAAGGAATTTTCAAAATTCTCTGTGAATGCAAAGTTATCAATCTCGGTGTGTTTCCCGTTCTCCAAAATTTGCAGAGTGATCGGAAACATACATGATAGCAGAGCTCCAGACTCCTGAAAATCGTCAAAATGGCCGAAAAGCATCTGAAAAATCTGTTTTTGTATATCTTTTTGACCGGTACCGTACATAAAAAATGAGAGAAATTGCGAAAAAAAACACGGATCATGAAGTTTTCTGTTGGAAGACGAGACTCTATTTTTTGGTACCAAGTACAATGTATCGATGCTCGAAAACTGCTATACAGACTTTTGAAGAACGTATGTAATTTTGAAAAATTTC</canonical>
            <polymorphic>TTTTTTGGGGTAAACCAAACAATATGAAAATCCAATTAGAAAATTTTCGTATAGAGTGTGAAACACAACAATTTCAAATTGATACCAGCCGTAAAAAAGAGAGAAACAGTGAGAAAAGAAGAAGAAACAGAAACCAATTGGTCAGTACATTGAATAGTGTAAAACAGAAAGAGAAGAGAAATAGTGTTGAAGGTCATGAGACACAGGCAATCATTTGACAGTTGTTGTCTTTTTGATAAACGGAAAATGGAAAGAAAATGGGTGGGAAGTTGAATTGAAAAATAAAAAAGAGAAGGAGAAAAAGAAAACGGAGTCATTTTGGAAGGGAGATGGATATAAATTGTATATACGAGAGTGTAGGAGATTTAGAGAAAAAGGGAAAAAAAGAAGGAGCATAAAAAAAGGCCTAGAGATGGGAAAGCAGAAGCCAACTGGGACCTTTTTCGTTAAGTTGGAAGAAGGAAAGAATGAGGATACTTCAGAATGAACTTCATAGAAARCATGAGACTTTCAAACACATTTTTTGAAATATTTCAGTAGTCAAAAAAATGAAAAATTTGTCAAAATTCGTTGTTCCAAGTCCTACCATTCTTTCGGACCTTTTTGTACTGAAAAAGTGAAAAACTGGTGCATTCCAGAAATTGGCAAAAATCAGAAAAACAAGGAATTTTCAAAATTCTCTGTGAATGCAAAGTTATCAATCTCGGTGTGTTTCCCGTTCTCCAAAATTTGCAGAGTGATCGGAAACATACATGATAGCAGAGCTCCAGACTCCTGAAAATCGTCAAAATGGCCGAAAAGCATCTGAAAAATCTGTTTTTGTATATCTTTTTGACCGGTACCGTACATAAAAAATGAGAGAAATTGCGAAAAAAAACACGGATCATGAAGTTTTCTGTTGGAAGACGAGACTCTATTTTTTGGTACCAAGTACAATGTATCGATGCTCGAAAACTGCTATACAGACTTTTGAAGAACGTATGTAATTTTGAAAAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTGGAAGAAGGAAAGAATG</pcr_primer_p1>
		<pcr_primer_p2>TTTCGCAATTTCTCTCATTT</pcr_primer_p2>
		<pcr_amplicon_size>423</pcr_amplicon_size>
		<canonical_amplicon>AGTTGGAAGAAGGAAAGAATGAGGATACTTCAGAATGAACTTCATAGAAAACATGAGACTTTCAAACACATTTTTTGAAATATTTCAGTAGTCAAAAAAATGAAAAATTTGTCAAAATTCGTTGTTCCAAGTCCTACCATTCTTTCGGACCTTTTTGTACTGAAAAAGTGAAAAACTGGTGCATTCCAGAAATTGGCAAAAATCAGAAAAACAAGGAATTTTCAAAATTCTCTGTGAATGCAAAGTTATCAATCTCGGTGTGTTTCCCGTTCTCCAAAATTTGCAGAGTGATCGGAAACATACATGATAGCAGAGCTCCAGACTCCTGAAAATCGTCAAAATGGCCGAAAAGCATCTGAAAAATCTGTTTTTGTATATCTTTTTGACCGGTACCGTACATAAAAAATGAGAGAAATTGCGAAA</canonical_amplicon>
		<polymorphic_amplicon>AGTTGGAAGAAGGAAAGAATGAGGATACTTCAGAATGAACTTCATAGAAARCATGAGACTTTCAAACACATTTTTTGAAATATTTCAGTAGTCAAAAAAATGAAAAATTTGTCAAAATTCGTTGTTCCAAGTCCTACCATTCTTTCGGACCTTTTTGTACTGAAAAAGTGAAAAACTGGTGCATTCCAGAAATTGGCAAAAATCAGAAAAACAAGGAATTTTCAAAATTCTCTGTGAATGCAAAGTTATCAATCTCGGTGTGTTTCCCGTTCTCCAAAATTTGCAGAGTGATCGGAAACATACATGATAGCAGAGCTCCAGACTCCTGAAAATCGTCAAAATGGCCGAAAAGCATCTGAAAAATCTGTTTTTGTATATCTTTTTGACCGGTACCGTACATAAAAAATGAGAGAAATTGCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32152</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>53687</contig_pos>
        <strand>+</strand>
        <context>TTTCATTTTT[G/T]AGTAGACAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGCCTATTTGTATCTTCAAAACATCATTTACATCAAGGATTTCATTTTT</left_flank>
        <right_flank>AGTAGACAATTTAAAGTACTTCCAAATCAAGAATCAATCAGACCATTTTA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTAGATAATGAAATTTTTAACCTGAAAAAAACTTCTAACTACTTTTACAAAAGCTGGGAAACGCCTAAAATAAGCATGACTGTAATAGAGCGTCACTCAACTTTGAGCGCGATTATCTCCATTCATATGAGAGATATCGAAAATGTATCAACTAACAAAATGCTGTTAATATTATGATCAAAATTTTACCAGTTGACAACTTGTATATATCTTTGACAGGAACCGAGTTAAACTGGCTCACAAACGGAAACCCTTCTATTACAGGTTTTAAGGTATAAACCTCTATTTTTGAAAATGACTTAGTCATCTCATGGATACTGTCTCTATGATTTAGAATTTCTGGACTAGCTCTATGATTTAGAATTTTCTGAATTTCAAAAAAGTTATAAATGTTTGTTTTCTGGACTTTTGAGAAAGTGAAGAACGCGCCAAAGGCTCGTCAGCTTGCCTATTTGTATCTTCAAAACATCATTTACATCAAGGATTTCATTTTTGAGTAGACAATTTAAAGTACTTCCAAATCAAGAATCAATCAGACCATTTTAAAGGGCGGAAGCAGAAGCAACCTATGGTCAAAAACTGCAATCAATCATTGACACGTTCTCACAATCGAGGTGAGACTAATCTATATGTCTATGCCAAACTGGTTCCATTCAGACTAGACCTCCCAATAAAACGACTATCGGAAATCGCAAAAGTGCACACTCGAACAGCGGCAAACCTGAAAAAGTACATGGATCCAAAAAAGAATGAACACTTGAACCTTTGGAAATTCTGCAATGTTTATTCGTGTGGAGCTGTGGATTTGGATAAAGCGATGAGAGAAACTAGATCATCGTTGAGGACAAAAATGGCAGTTGACGGAACTGTGATAGAGAAACCGAAACGGAGAAATATCTTTAATTCAATTCAGAATCATTTGAATTCGTCGTCATCCTCATATTCTACGAAATCAGCTGAGAATAGCGAGAAAGTTGAGAAGGATAGACGATGGT</canonical>
            <polymorphic>TTTTTTTAGATAATGAAATTTTTAACCTGAAAAAAACTTCTAACTACTTTTACAAAAGCTGGGAAACGCCTAAAATAAGCATGACTGTAATAGAGCGTCACTCAACTTTGAGCGCGATTATCTCCATTCATATGAGAGATATCGAAAATGTATCAACTAACAAAATGCTGTTAATATTATGATCAAAATTTTACCAGTTGACAACTTGTATATATCTTTGACAGGAACCGAGTTAAACTGGCTCACAAACGGAAACCCTTCTATTACAGGTTTTAAGGTATAAACCTCTATTTTTGAAAATGACTTAGTCATCTCATGGATACTGTCTCTATGATTTAGAATTTCTGGACTAGCTCTATGATTTAGAATTTTCTGAATTTCAAAAAAGTTATAAATGTTTGTTTTCTGGACTTTTGAGAAAGTGAAGAACGCGCCAAAGGCTCGTCAGCTTGCCTATTTGTATCTTCAAAACATCATTTACATCAAGGATTTCATTTTTKAGTAGACAATTTAAAGTACTTCCAAATCAAGAATCAATCAGACCATTTTAAAGGGCGGAAGCAGAAGCAACCTATGGTCAAAAACTGCAATCAATCATTGACACGTTCTCACAATCGAGGTGAGACTAATCTATATGTCTATGCCAAACTGGTTCCATTCAGACTAGACCTCCCAATAAAACGACTATCGGAAATCGCAAAAGTGCACACTCGAACAGCGGCAAACCTGAAAAAGTACATGGATCCAAAAAAGAATGAACACTTGAACCTTTGGAAATTCTGCAATGTTTATTCGTGTGGAGCTGTGGATTTGGATAAAGCGATGAGAGAAACTAGATCATCGTTGAGGACAAAAATGGCAGTTGACGGAACTGTGATAGAGAAACCGAAACGGAGAAATATCTTTAATTCAATTCAGAATCATTTGAATTCGTCGTCATCCTCATATTCTACGAAATCAGCTGAGAATAGCGAGAAAGTTGAGAAGGATAGACGATGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGACTTTTGAGAAAGTGAAGAA</pcr_primer_p1>
		<pcr_primer_p2>ACCAGTTTGGCATAGACATATAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGACTTTTGAGAAAGTGAAGAACGCGCCAAAGGCTCGTCAGCTTGCCTATTTGTATCTTCAAAACATCATTTACATCAAGGATTTCATTTTTGAGTAGACAATTTAAAGTACTTCCAAATCAAGAATCAATCAGACCATTTTAAAGGGCGGAAGCAGAAGCAACCTATGGTCAAAAACTGCAATCAATCATTGACACGTTCTCACAATCGAGGTGAGACTAATCTATATGTCTATGCCAAACTGGT</canonical_amplicon>
		<polymorphic_amplicon>GGACTTTTGAGAAAGTGAAGAACGCGCCAAAGGCTCGTCAGCTTGCCTATTTGTATCTTCAAAACATCATTTACATCAAGGATTTCATTTTTKAGTAGACAATTTAAAGTACTTCCAAATCAAGAATCAATCAGACCATTTTAAAGGGCGGAAGCAGAAGCAACCTATGGTCAAAAACTGCAATCAATCATTGACACGTTCTCACAATCGAGGTGAGACTAATCTATATGTCTATGCCAAACTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32153</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>84056</contig_pos>
        <strand></strand>
        <context>tgtttaaaaa[C/T]caactttcta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATCTGTGCAGAATATTATGCTAGAAATTTTCTTCAAATCTGTTTAAAAA</left_flank>
        <right_flank>CAACTTTCTAGCTTATCTAGAAGCTGAGATACACCCTTTTAAAGTTTCGC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCACGTCATCATCCTCGCCCACATCTTCGTCTTCCACGTCATCAGAATCTTCTTCAGATGAATGTTTCACCTCGATCAAACTCGATCTTTCGATATTCCCCAATGCTCTATGCGCCTTTAAAGTCATTCTCGACGCCATGTATTCTGGTGATATCAAAATGGCGGGTATCGTCCAACCGAACGAGGTAAGGAGTTGGAAAAACAAACATGGGGAATTTTTTGTGGGGGTTAATATTATATGGTACTGTAGAAAGGAAAAACATGACATGATAACAAAAAAAGAACTATTATTTTCAAGTTGGACAGGTTGGAAATGAGTGGGAGTAGTAGAAGATCATTCGAGAACGAACTATAAATTCAGAATTCGTCATGGATCCACGTGATATAGTGTTTATTAATAGAATTGAGAGTCTCAAGCTGACCGATGGGTTGGCGGTCGGTGGGCTTGTATCTGTGCAGAATATTATGCTAGAAATTTTCTTCAAATCTGTTTAAAAACCAACTTTCTAGCTTATCTAGAAGCTGAGATACACCCTTTTAAAGTTTCGCACGATAGAGACGCAGACAACGAGACACACTGCGTCTCTAACCTCCCAAACTTCAAATTACTGTATTTCGGCTTCTAGAAGGGCTAGAAAGTTGGTTTTTTGATAGAATTGCAGCAAATTTTTGGTTCTATAAGGTCCTAATAGTAAGCAAAAATCAAGAAAAATCAAGTTTCTAGCTGACCGATAGTCGACGGAATAAATGCACTTTGGCAGCATTTGAATAGTGCGTCGTAAAATAATTGCTACGGACGCAAACACTCTGGCATGTTGACGCGAAAATGCACAAATTCGGTCGGCAGGCCGGCTAAATTTCCAGACCAAATCACCTCCAAAACTTTCCAGATTCTCGCTATCTGTCAATTCTGTCAAATATCATTTCTGGACCAGAAGATTATCTCTCTAGCATCTGCCACACCTCCAATGACGCTTGCAAGTGCGCTCCAATGCTCCA</canonical>
            <polymorphic>GCCACGTCATCATCCTCGCCCACATCTTCGTCTTCCACGTCATCAGAATCTTCTTCAGATGAATGTTTCACCTCGATCAAACTCGATCTTTCGATATTCCCCAATGCTCTATGCGCCTTTAAAGTCATTCTCGACGCCATGTATTCTGGTGATATCAAAATGGCGGGTATCGTCCAACCGAACGAGGTAAGGAGTTGGAAAAACAAACATGGGGAATTTTTTGTGGGGGTTAATATTATATGGTACTGTAGAAAGGAAAAACATGACATGATAACAAAAAAAGAACTATTATTTTCAAGTTGGACAGGTTGGAAATGAGTGGGAGTAGTAGAAGATCATTCGAGAACGAACTATAAATTCAGAATTCGTCATGGATCCACGTGATATAGTGTTTATTAATAGAATTGAGAGTCTCAAGCTGACCGATGGGTTGGCGGTCGGTGGGCTTGTATCTGTGCAGAATATTATGCTAGAAATTTTCTTCAAATCTGTTTAAAAAYCAACTTTCTAGCTTATCTAGAAGCTGAGATACACCCTTTTAAAGTTTCGCACGATAGAGACGCAGACAACGAGACACACTGCGTCTCTAACCTCCCAAACTTCAAATTACTGTATTTCGGCTTCTAGAAGGGCTAGAAAGTTGGTTTTTTGATAGAATTGCAGCAAATTTTTGGTTCTATAAGGTCCTAATAGTAAGCAAAAATCAAGAAAAATCAAGTTTCTAGCTGACCGATAGTCGACGGAATAAATGCACTTTGGCAGCATTTGAATAGTGCGTCGTAAAATAATTGCTACGGACGCAAACACTCTGGCATGTTGACGCGAAAATGCACAAATTCGGTCGGCAGGCCGGCTAAATTTCCAGACCAAATCACCTCCAAAACTTTCCAGATTCTCGCTATCTGTCAATTCTGTCAAATATCATTTCTGGACCAGAAGATTATCTCTCTAGCATCTGCCACACCTCCAATGACGCTTGCAAGTGCGCTCCAATGCTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATCCACGTGATATAGTGTTTA</pcr_primer_p1>
		<pcr_primer_p2>CTGCCAAAGTGCATTTATTC</pcr_primer_p2>
		<pcr_amplicon_size>390</pcr_amplicon_size>
		<canonical_amplicon>GGATCCACGTGATATAGTGTTTATTAATAGAATTGAGAGTCTCAAGCTGACCGATGGGTTGGCGGTCGGTGGGCTTGTATCTGTGCAGAATATTATGCTAGAAATTTTCTTCAAATCTGTTTAAAAACCAACTTTCTAGCTTATCTAGAAGCTGAGATACACCCTTTTAAAGTTTCGCACGATAGAGACGCAGACAACGAGACACACTGCGTCTCTAACCTCCCAAACTTCAAATTACTGTATTTCGGCTTCTAGAAGGGCTAGAAAGTTGGTTTTTTGATAGAATTGCAGCAAATTTTTGGTTCTATAAGGTCCTAATAGTAAGCAAAAATCAAGAAAAATCAAGTTTCTAGCTGACCGATAGTCGACGGAATAAATGCACTTTGGCAG</canonical_amplicon>
		<polymorphic_amplicon>GGATCCACGTGATATAGTGTTTATTAATAGAATTGAGAGTCTCAAGCTGACCGATGGGTTGGCGGTCGGTGGGCTTGTATCTGTGCAGAATATTATGCTAGAAATTTTCTTCAAATCTGTTTAAAAAYCAACTTTCTAGCTTATCTAGAAGCTGAGATACACCCTTTTAAAGTTTCGCACGATAGAGACGCAGACAACGAGACACACTGCGTCTCTAACCTCCCAAACTTCAAATTACTGTATTTCGGCTTCTAGAAGGGCTAGAAAGTTGGTTTTTTGATAGAATTGCAGCAAATTTTTGGTTCTATAAGGTCCTAATAGTAAGCAAAAATCAAGAAAAATCAAGTTTCTAGCTGACCGATAGTCGACGGAATAAATGCACTTTGGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32154</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>111622</contig_pos>
        <strand>+</strand>
        <context>GACGATTTTC[C/T]TTGGTCGAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGCATCAGCAGATCGAATCTGTCCAGCCAGCCAAAAACAGACGATTTTC</left_flank>
        <right_flank>TTGGTCGAACCGAGTATCGAGTGTCCATGTTTGATGAGAAGAATCGAGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGCCAAACCCGAAAACTCCCCGCTTTTGACCGTTTTCTAGGTGTGACCTAGATTTCTCAGTTTTCGAAAAAAGTTTCAAAAAAAACCTTCTGGAATTTTTTTTCGCTTCTTAAAGCGGTTTTAGCCGAATTTTTTAAAGCTAATTTTTTGAAAAATCGCGAAATCAACCACAAAAATTTTGCTACCGTAAAACCTGTAATAAAAGGGCTCCTAACGTTTCAGCTTTAAGCCAATTTATCTCGATTCCTGTCACAGATATAAAAAAGTTGTCAATTGATAAAATATTCTTCATAATATCACCAACATCTTATCAGTCGACACACTTTAGATATCTCTTACAGTAACCGAAATAGTTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTATAGGTTTATATTAAGAACTTCAAAAATTCCCATATTTTCAGTCCGAAACGCTCTCGTCAGCATCAGCAGATCGAATCTGTCCAGCCAGCCAAAAACAGACGATTTTCCTTGGTCGAACCGAGTATCGAGTGTCCATGTTTGATGAGAAGAATCGAGGAAAAACGTGGAATGCGACGTTCAACGACTACTCGGCTCATCTACTTCCAGAAGTCAATTCGTGGCCATTCCAGCATTATACGTCGTCGTCGCATGGACAAATTCTCACTTTTGATAAGGAAACAGGTAGCTGGAAGTTGTGGAAAAAATCGGAACATTCTGAAAGTCGTGAAATGTTACAAATTTGAGAATCCAGTGTATCCCAAGAGTTCTCAGATTCCTAAAAATCCTAAAAATTCTGAAAATTAAAAAAATATATAAAAATCCAAACAATTCTGAAAGTCCGAAAACTCTAAAAATTCTGAAAATTAAAAAAATCTCAAAAATCTGAACGTCTTCAAATTCCTAAAAATTCTAAAAATCCTAATATTCTAAGAAACTTAAAATTTTGAAAAATTCGAAATTCTAAAAATTCTGAAAATCTAGAAGTTCAAAAAATCTGCAAGTTTTGA</canonical>
            <polymorphic>CCGCCAAACCCGAAAACTCCCCGCTTTTGACCGTTTTCTAGGTGTGACCTAGATTTCTCAGTTTTCGAAAAAAGTTTCAAAAAAAACCTTCTGGAATTTTTTTTCGCTTCTTAAAGCGGTTTTAGCCGAATTTTTTAAAGCTAATTTTTTGAAAAATCGCGAAATCAACCACAAAAATTTTGCTACCGTAAAACCTGTAATAAAAGGGCTCCTAACGTTTCAGCTTTAAGCCAATTTATCTCGATTCCTGTCACAGATATAAAAAAGTTGTCAATTGATAAAATATTCTTCATAATATCACCAACATCTTATCAGTCGACACACTTTAGATATCTCTTACAGTAACCGAAATAGTTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTATAGGTTTATATTAAGAACTTCAAAAATTCCCATATTTTCAGTCCGAAACGCTCTCGTCAGCATCAGCAGATCGAATCTGTCCAGCCAGCCAAAAACAGACGATTTTCYTTGGTCGAACCGAGTATCGAGTGTCCATGTTTGATGAGAAGAATCGAGGAAAAACGTGGAATGCGACGTTCAACGACTACTCGGCTCATCTACTTCCAGAAGTCAATTCGTGGCCATTCCAGCATTATACGTCGTCGTCGCATGGACAAATTCTCACTTTTGATAAGGAAACAGGTAGCTGGAAGTTGTGGAAAAAATCGGAACATTCTGAAAGTCGTGAAATGTTACAAATTTGAGAATCCAGTGTATCCCAAGAGTTCTCAGATTCCTAAAAATCCTAAAAATTCTGAAAATTAAAAAAATATATAAAAATCCAAACAATTCTGAAAGTCCGAAAACTCTAAAAATTCTGAAAATTAAAAAAATCTCAAAAATCTGAACGTCTTCAAATTCCTAAAAATTCTAAAAATCCTAATATTCTAAGAAACTTAAAATTTTGAAAAATTCGAAATTCTAAAAATTCTGAAAATCTAGAAGTTCAAAAAATCTGCAAGTTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTCCCATATTTTCAGTCC</pcr_primer_p1>
		<pcr_primer_p2>TCAAAAGTGAGAATTTGTCCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAATTCCCATATTTTCAGTCCGAAACGCTCTCGTCAGCATCAGCAGATCGAATCTGTCCAGCCAGCCAAAAACAGACGATTTTCCTTGGTCGAACCGAGTATCGAGTGTCCATGTTTGATGAGAAGAATCGAGGAAAAACGTGGAATGCGACGTTCAACGACTACTCGGCTCATCTACTTCCAGAAGTCAATTCGTGGCCATTCCAGCATTATACGTCGTCGTCGCATGGACAAATTCTCACTTTTGA</canonical_amplicon>
		<polymorphic_amplicon>AAAATTCCCATATTTTCAGTCCGAAACGCTCTCGTCAGCATCAGCAGATCGAATCTGTCCAGCCAGCCAAAAACAGACGATTTTCYTTGGTCGAACCGAGTATCGAGTGTCCATGTTTGATGAGAAGAATCGAGGAAAAACGTGGAATGCGACGTTCAACGACTACTCGGCTCATCTACTTCCAGAAGTCAATTCGTGGCCATTCCAGCATTATACGTCGTCGTCGCATGGACAAATTCTCACTTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32155</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>111846</contig_pos>
        <strand>+</strand>
        <context>GTCGTGAAAT[G/T]KTACAAATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGTAGCTGGAAGTTGTGGAAAAAATCGGAACATTCTGAAAGTCGTGAAAT</left_flank>
        <right_flank>TTACAAATTTGAGAATCCAGTGTATCCCAAGAGTTCTCAGATTCCTAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAAGCCAATTTATCTCGATTCCTGTCACAGATATAAAAAAGTTGTCAATTGATAAAATATTCTTCATAATATCACCAACATCTTATCAGTCGACACACTTTAGATATCTCTTACAGTAACCGAAATAGTTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTATAGGTTTATATTAAGAACTTCAAAAATTCCCATATTTTCAGTCCGAAACGCTCTCGTCAGCATCAGCAGATCGAATCTGTCCAGCCAGCCAAAAACAGACGATTTTCCTTGGTCGAACCGAGTATCGAGTGTCCATGTTTGATGAGAAGAATCGAGGAAAAACGTGGAATGCGACGTTCAACGACTACTCGGCTCATCTACTTCCAGAAGTCAATTCGTGGCCATTCCAGCATTATACGTCGTCGTCGCATGGACAAATTCTCACTTTTGATAAGGAAACAGGTAGCTGGAAGTTGTGGAAAAAATCGGAACATTCTGAAAGTCGTGAAATGTTACAAATTTGAGAATCCAGTGTATCCCAAGAGTTCTCAGATTCCTAAAAATCCTAAAAATTCTGAAAATTAAAAAAATATATAAAAATCCAAACAATTCTGAAAGTCCGAAAACTCTAAAAATTCTGAAAATTAAAAAAATCTCAAAAATCTGAACGTCTTCAAATTCCTAAAAATTCTAAAAATCCTAATATTCTAAGAAACTTAAAATTTTGAAAAATTCGAAATTCTAAAAATTCTGAAAATCTAGAAGTTCAAAAAATCTGCAAGTTTTGAAAATCCAAAAATTCTAAAATTCTGAAAATCCAAAAATTCGAAAATCCATAAACACTGAAAATCTAAGAATCCTTAATAATTCTGAAAAATTCTGAAAGTCCTAAAATTCGAAAAATGCTAAAAATCTAAAAGTCCAAAGATTATTGAAATCCTAAAATTTCAAAAAATTAAAATTTCTGACAATCTAAAAATTCTAAAACTCCAAAATCTGAAATTTCTGAAAA</canonical>
            <polymorphic>TTTAAGCCAATTTATCTCGATTCCTGTCACAGATATAAAAAAGTTGTCAATTGATAAAATATTCTTCATAATATCACCAACATCTTATCAGTCGACACACTTTAGATATCTCTTACAGTAACCGAAATAGTTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTATAGGTTTATATTAAGAACTTCAAAAATTCCCATATTTTCAGTCCGAAACGCTCTCGTCAGCATCAGCAGATCGAATCTGTCCAGCCAGCCAAAAACAGACGATTTTCCTTGGTCGAACCGAGTATCGAGTGTCCATGTTTGATGAGAAGAATCGAGGAAAAACGTGGAATGCGACGTTCAACGACTACTCGGCTCATCTACTTCCAGAAGTCAATTCGTGGCCATTCCAGCATTATACGTCGTCGTCGCATGGACAAATTCTCACTTTTGATAAGGAAACAGGTAGCTGGAAGTTGTGGAAAAAATCGGAACATTCTGAAAGTCGTGAAATKTTACAAATTTGAGAATCCAGTGTATCCCAAGAGTTCTCAGATTCCTAAAAATCCTAAAAATTCTGAAAATTAAAAAAATATATAAAAATCCAAACAATTCTGAAAGTCCGAAAACTCTAAAAATTCTGAAAATTAAAAAAATCTCAAAAATCTGAACGTCTTCAAATTCCTAAAAATTCTAAAAATCCTAATATTCTAAGAAACTTAAAATTTTGAAAAATTCGAAATTCTAAAAATTCTGAAAATCTAGAAGTTCAAAAAATCTGCAAGTTTTGAAAATCCAAAAATTCTAAAATTCTGAAAATCCAAAAATTCGAAAATCCATAAACACTGAAAATCTAAGAATCCTTAATAATTCTGAAAAATTCTGAAAGTCCTAAAATTCGAAAAATGCTAAAAATCTAAAAGTCCAAAGATTATTGAAATCCTAAAATTTCAAAAAATTAAAATTTCTGACAATCTAAAAATTCTAAAACTCCAAAATCTGAAATTTCTGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 382 92 25</canonical_bands>
                <polymorphic_bands>883 92 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAGAAGAATCGAGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTAGGATTTTTAGGAATCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGAGAAGAATCGAGGAAAAACGTGGAATGCGACGTTCAACGACTACTCGGCTCATCTACTTCCAGAAGTCAATTCGTGGCCATTCCAGCATTATACGTCGTCGTCGCATGGACAAATTCTCACTTTTGATAAGGAAACAGGTAGCTGGAAGTTGTGGAAAAAATCGGAACATTCTGAAAGTCGTGAAATGTTACAAATTTGAGAATCCAGTGTATCCCAAGAGTTCTCAGATTCCTAAAAATCCTAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATGAGAAGAATCGAGGAAAAACGTGGAATGCGACGTTCAACGACTACTCGGCTCATCTACTTCCAGAAGTCAATTCGTGGCCATTCCAGCATTATACGTCGTCGTCGCATGGACAAATTCTCACTTTTGATAAGGAAACAGGTAGCTGGAAGTTGTGGAAAAAATCGGAACATTCTGAAAGTCGTGAAATKTTACAAATTTGAGAATCCAGTGTATCCCAAGAGTTCTCAGATTCCTAAAAATCCTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32156</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>111847</contig_pos>
        <strand>+</strand>
        <context>TCGTGAAATK[G/T]TACAAATTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTAGCTGGAAGTTGTGGAAAAAATCGGAACATTCTGAAAGTCGTGAAATG</left_flank>
        <right_flank>TACAAATTTGAGAATCCAGTGTATCCCAAGAGTTCTCAGATTCCTAAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAAGCCAATTTATCTCGATTCCTGTCACAGATATAAAAAAGTTGTCAATTGATAAAATATTCTTCATAATATCACCAACATCTTATCAGTCGACACACTTTAGATATCTCTTACAGTAACCGAAATAGTTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTATAGGTTTATATTAAGAACTTCAAAAATTCCCATATTTTCAGTCCGAAACGCTCTCGTCAGCATCAGCAGATCGAATCTGTCCAGCCAGCCAAAAACAGACGATTTTCCTTGGTCGAACCGAGTATCGAGTGTCCATGTTTGATGAGAAGAATCGAGGAAAAACGTGGAATGCGACGTTCAACGACTACTCGGCTCATCTACTTCCAGAAGTCAATTCGTGGCCATTCCAGCATTATACGTCGTCGTCGCATGGACAAATTCTCACTTTTGATAAGGAAACAGGTAGCTGGAAGTTGTGGAAAAAATCGGAACATTCTGAAAGTCGTGAAATGTTACAAATTTGAGAATCCAGTGTATCCCAAGAGTTCTCAGATTCCTAAAAATCCTAAAAATTCTGAAAATTAAAAAAATATATAAAAATCCAAACAATTCTGAAAGTCCGAAAACTCTAAAAATTCTGAAAATTAAAAAAATCTCAAAAATCTGAACGTCTTCAAATTCCTAAAAATTCTAAAAATCCTAATATTCTAAGAAACTTAAAATTTTGAAAAATTCGAAATTCTAAAAATTCTGAAAATCTAGAAGTTCAAAAAATCTGCAAGTTTTGAAAATCCAAAAATTCTAAAATTCTGAAAATCCAAAAATTCGAAAATCCATAAACACTGAAAATCTAAGAATCCTTAATAATTCTGAAAAATTCTGAAAGTCCTAAAATTCGAAAAATGCTAAAAATCTAAAAGTCCAAAGATTATTGAAATCCTAAAATTTCAAAAAATTAAAATTTCTGACAATCTAAAAATTCTAAAACTCCAAAATCTGAAATTTCTGAAAAT</canonical>
            <polymorphic>TTAAGCCAATTTATCTCGATTCCTGTCACAGATATAAAAAAGTTGTCAATTGATAAAATATTCTTCATAATATCACCAACATCTTATCAGTCGACACACTTTAGATATCTCTTACAGTAACCGAAATAGTTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTATAGGTTTATATTAAGAACTTCAAAAATTCCCATATTTTCAGTCCGAAACGCTCTCGTCAGCATCAGCAGATCGAATCTGTCCAGCCAGCCAAAAACAGACGATTTTCCTTGGTCGAACCGAGTATCGAGTGTCCATGTTTGATGAGAAGAATCGAGGAAAAACGTGGAATGCGACGTTCAACGACTACTCGGCTCATCTACTTCCAGAAGTCAATTCGTGGCCATTCCAGCATTATACGTCGTCGTCGCATGGACAAATTCTCACTTTTGATAAGGAAACAGGTAGCTGGAAGTTGTGGAAAAAATCGGAACATTCTGAAAGTCGTGAAATGKTACAAATTTGAGAATCCAGTGTATCCCAAGAGTTCTCAGATTCCTAAAAATCCTAAAAATTCTGAAAATTAAAAAAATATATAAAAATCCAAACAATTCTGAAAGTCCGAAAACTCTAAAAATTCTGAAAATTAAAAAAATCTCAAAAATCTGAACGTCTTCAAATTCCTAAAAATTCTAAAAATCCTAATATTCTAAGAAACTTAAAATTTTGAAAAATTCGAAATTCTAAAAATTCTGAAAATCTAGAAGTTCAAAAAATCTGCAAGTTTTGAAAATCCAAAAATTCTAAAATTCTGAAAATCCAAAAATTCGAAAATCCATAAACACTGAAAATCTAAGAATCCTTAATAATTCTGAAAAATTCTGAAAGTCCTAAAATTCGAAAAATGCTAAAAATCTAAAAGTCCAAAGATTATTGAAATCCTAAAATTTCAAAAAATTAAAATTTCTGACAATCTAAAAATTCTAAAACTCCAAAATCTGAAATTTCTGAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 382 92 24</canonical_bands>
                <polymorphic_bands>884 92 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAGAAGAATCGAGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTAGGATTTTTAGGAATCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGAGAAGAATCGAGGAAAAACGTGGAATGCGACGTTCAACGACTACTCGGCTCATCTACTTCCAGAAGTCAATTCGTGGCCATTCCAGCATTATACGTCGTCGTCGCATGGACAAATTCTCACTTTTGATAAGGAAACAGGTAGCTGGAAGTTGTGGAAAAAATCGGAACATTCTGAAAGTCGTGAAATGTTACAAATTTGAGAATCCAGTGTATCCCAAGAGTTCTCAGATTCCTAAAAATCCTAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATGAGAAGAATCGAGGAAAAACGTGGAATGCGACGTTCAACGACTACTCGGCTCATCTACTTCCAGAAGTCAATTCGTGGCCATTCCAGCATTATACGTCGTCGTCGCATGGACAAATTCTCACTTTTGATAAGGAAACAGGTAGCTGGAAGTTGTGGAAAAAATCGGAACATTCTGAAAGTCGTGAAATGKTACAAATTTGAGAATCCAGTGTATCCCAAGAGTTCTCAGATTCCTAAAAATCCTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32157</snp_id>
        <super_contig>c007101130.Contig1</super_contig>
        <contig_pos>111926</contig_pos>
        <strand></strand>
        <context>ttaaaaaaat[A/C]tataaaaatC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAGTTCTCAGATTCCTAAAAATCCTAAAAATTCTGAAAATTAAAAAAAT</left_flank>
        <right_flank>TATAAAAATCCAAACAATTCTGAAAGTCCGAAAACTCTAAAAATTCTGAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCTTATCAGTCGACACACTTTAGATATCTCTTACAGTAACCGAAATAGTTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTATAGGTTTATATTAAGAACTTCAAAAATTCCCATATTTTCAGTCCGAAACGCTCTCGTCAGCATCAGCAGATCGAATCTGTCCAGCCAGCCAAAAACAGACGATTTTCCTTGGTCGAACCGAGTATCGAGTGTCCATGTTTGATGAGAAGAATCGAGGAAAAACGTGGAATGCGACGTTCAACGACTACTCGGCTCATCTACTTCCAGAAGTCAATTCGTGGCCATTCCAGCATTATACGTCGTCGTCGCATGGACAAATTCTCACTTTTGATAAGGAAACAGGTAGCTGGAAGTTGTGGAAAAAATCGGAACATTCTGAAAGTCGTGAAATGTTACAAATTTGAGAATCCAGTGTATCCCAAGAGTTCTCAGATTCCTAAAAATCCTAAAAATTCTGAAAATTAAAAAAATATATAAAAATCCAAACAATTCTGAAAGTCCGAAAACTCTAAAAATTCTGAAAATTAAAAAAATCTCAAAAATCTGAACGTCTTCAAATTCCTAAAAATTCTAAAAATCCTAATATTCTAAGAAACTTAAAATTTTGAAAAATTCGAAATTCTAAAAATTCTGAAAATCTAGAAGTTCAAAAAATCTGCAAGTTTTGAAAATCCAAAAATTCTAAAATTCTGAAAATCCAAAAATTCGAAAATCCATAAACACTGAAAATCTAAGAATCCTTAATAATTCTGAAAAATTCTGAAAGTCCTAAAATTCGAAAAATGCTAAAAATCTAAAAGTCCAAAGATTATTGAAATCCTAAAATTTCAAAAAATTAAAATTTCTGACAATCTAAAAATTCTAAAACTCCAAAATCTGAAATTTCTGAAAATCCTGAAAATCTAAAAATTCAAAAATTCTGAAAATCATGATACTCCTAAAAACCTAAGAATCCGAAATATCCTGAAAATC</canonical>
            <polymorphic>CATCTTATCAGTCGACACACTTTAGATATCTCTTACAGTAACCGAAATAGTTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTATAGGTTTATATTAAGAACTTCAAAAATTCCCATATTTTCAGTCCGAAACGCTCTCGTCAGCATCAGCAGATCGAATCTGTCCAGCCAGCCAAAAACAGACGATTTTCCTTGGTCGAACCGAGTATCGAGTGTCCATGTTTGATGAGAAGAATCGAGGAAAAACGTGGAATGCGACGTTCAACGACTACTCGGCTCATCTACTTCCAGAAGTCAATTCGTGGCCATTCCAGCATTATACGTCGTCGTCGCATGGACAAATTCTCACTTTTGATAAGGAAACAGGTAGCTGGAAGTTGTGGAAAAAATCGGAACATTCTGAAAGTCGTGAAATGTTACAAATTTGAGAATCCAGTGTATCCCAAGAGTTCTCAGATTCCTAAAAATCCTAAAAATTCTGAAAATTAAAAAAATMTATAAAAATCCAAACAATTCTGAAAGTCCGAAAACTCTAAAAATTCTGAAAATTAAAAAAATCTCAAAAATCTGAACGTCTTCAAATTCCTAAAAATTCTAAAAATCCTAATATTCTAAGAAACTTAAAATTTTGAAAAATTCGAAATTCTAAAAATTCTGAAAATCTAGAAGTTCAAAAAATCTGCAAGTTTTGAAAATCCAAAAATTCTAAAATTCTGAAAATCCAAAAATTCGAAAATCCATAAACACTGAAAATCTAAGAATCCTTAATAATTCTGAAAAATTCTGAAAGTCCTAAAATTCGAAAAATGCTAAAAATCTAAAAGTCCAAAGATTATTGAAATCCTAAAATTTCAAAAAATTAAAATTTCTGACAATCTAAAAATTCTAAAACTCCAAAATCTGAAATTTCTGAAAATCCTGAAAATCTAAAAATTCAAAAATTCTGAAAATCATGATACTCCTAAAAACCTAAGAATCCGAAATATCCTGAAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAATTCTCACTTTTGATAAGG</pcr_primer_p1>
		<pcr_primer_p2>GACGTTCAGATTTTTGAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ACAAATTCTCACTTTTGATAAGGAAACAGGTAGCTGGAAGTTGTGGAAAAAATCGGAACATTCTGAAAGTCGTGAAATGTTACAAATTTGAGAATCCAGTGTATCCCAAGAGTTCTCAGATTCCTAAAAATCCTAAAAATTCTGAAAATTAAAAAAATATATAAAAATCCAAACAATTCTGAAAGTCCGAAAACTCTAAAAATTCTGAAAATTAAAAAAATCTCAAAAATCTGAACGTC</canonical_amplicon>
		<polymorphic_amplicon>ACAAATTCTCACTTTTGATAAGGAAACAGGTAGCTGGAAGTTGTGGAAAAAATCGGAACATTCTGAAAGTCGTGAAATGTTACAAATTTGAGAATCCAGTGTATCCCAAGAGTTCTCAGATTCCTAAAAATCCTAAAAATTCTGAAAATTAAAAAAATMTATAAAAATCCAAACAATTCTGAAAGTCCGAAAACTCTAAAAATTCTGAAAATTAAAAAAATCTCAAAAATCTGAACGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32158</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>33662</contig_pos>
        <strand>+</strand>
        <context>AAAAATGCCA[C/T]CACCCACCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAGTTTCCTCAACACCTCTTTTTCCCATACACCCACCAAAAAAATGCCA</left_flank>
        <right_flank>CACCCACCCAAACTATTCCCCTTTCCCCCACCGGACTCGTCGATTTTTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAATGTATTTTTTTTCCTTCCTGTTTCTTCCATAGTTAACTCATTTGTCAGTTTATCTATTGATCCTAGCCAGCAGAATATCTGCAAAAATTATTTTTTTTTTCAATCTAAAAAAAACTTCAAAAATACAAAAAATAACTTGATTTAGTATAGCGATTTTTCTATTTTTCCGCCTTCTACCCGGCAACTGGAATTTGTAAAGCTTTACAGATTTTTCCTACCTGTCTCACCATCATTTTCTGTAGGTTAACAAAAAGAAGAAGATGAATTCTACTAACTTCCTAAAGTCTTCTTTTAATAATTAACATCAAGCAGTGAATGCCAAATCTTGTCTTTAATAATATGTAACATATAATTTTATAAGAATGCGCATCCACCAAAATTTTTTTCATTTTTTTTTCTCCTTCCCACTTCTTAATTCTGAACTCCATCCTTTATCCAGCATTGCGAAGTTTCCTCAACACCTCTTTTTCCCATACACCCACCAAAAAAATGCCACCACCCACCCAAACTATTCCCCTTTCCCCCACCGGACTCGTCGATTTTTTCCCAATTATTCTAAATGGAAAACCGCTGTCATGTCGCCATCTCAACTCACCCCCTGAATGTTTTCAAGTCCCCCAACATTTTCCACCCAGAATTTTGTTTTCCAAACTTTTGTTCACTCCACACAAAGCCCTCGACACGCTTCGTGCAAACACAAAAAAAATTCTGATGTAAACTATCTATAATGTAATCGTTAGAAGTTTTATTGGACTAATAAAATTTGGAAGTTGGTGCTTGGTCCAGGTTGGATATAGATTTTTATGTGGTTTCGGCAGGTGGAAGAAAATGTAATATTGCTGATGGTTAGATATTGAAGAAAAGTATTTGAAAAGAAATGTTTCAGCTGCATGTCGCGTGAATCAGGGGAGAAAGAATCGGACGGCTCCTTCTTCGACTGAAAAAAACGGGGGTCAAATTTTTTTAATCATGATCACAGCTCTTAGAGCTAAAAAA</canonical>
            <polymorphic>TCAATGTATTTTTTTTCCTTCCTGTTTCTTCCATAGTTAACTCATTTGTCAGTTTATCTATTGATCCTAGCCAGCAGAATATCTGCAAAAATTATTTTTTTTTTCAATCTAAAAAAAACTTCAAAAATACAAAAAATAACTTGATTTAGTATAGCGATTTTTCTATTTTTCCGCCTTCTACCCGGCAACTGGAATTTGTAAAGCTTTACAGATTTTTCCTACCTGTCTCACCATCATTTTCTGTAGGTTAACAAAAAGAAGAAGATGAATTCTACTAACTTCCTAAAGTCTTCTTTTAATAATTAACATCAAGCAGTGAATGCCAAATCTTGTCTTTAATAATATGTAACATATAATTTTATAAGAATGCGCATCCACCAAAATTTTTTTCATTTTTTTTTCTCCTTCCCACTTCTTAATTCTGAACTCCATCCTTTATCCAGCATTGCGAAGTTTCCTCAACACCTCTTTTTCCCATACACCCACCAAAAAAATGCCAYCACCCACCCAAACTATTCCCCTTTCCCCCACCGGACTCGTCGATTTTTTCCCAATTATTCTAAATGGAAAACCGCTGTCATGTCGCCATCTCAACTCACCCCCTGAATGTTTTCAAGTCCCCCAACATTTTCCACCCAGAATTTTGTTTTCCAAACTTTTGTTCACTCCACACAAAGCCCTCGACACGCTTCGTGCAAACACAAAAAAAATTCTGATGTAAACTATCTATAATGTAATCGTTAGAAGTTTTATTGGACTAATAAAATTTGGAAGTTGGTGCTTGGTCCAGGTTGGATATAGATTTTTATGTGGTTTCGGCAGGTGGAAGAAAATGTAATATTGCTGATGGTTAGATATTGAAGAAAAGTATTTGAAAAGAAATGTTTCAGCTGCATGTCGCGTGAATCAGGGGAGAAAGAATCGGACGGCTCCTTCTTCGACTGAAAAAAACGGGGGTCAAATTTTTTTAATCATGATCACAGCTCTTAGAGCTAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>230 88 79 79 76 68 59 53 36 34 32 31 24 20 17 14 14 13 9 6 5 4 4 3 2</canonical_bands>
                <polymorphic_bands>230 88 79 79 76 68 59 53 36 34 32 31 24 20 17 17 14 13 9 6 5 4 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGCCAAATCTTGTCTTTAATA</pcr_primer_p1>
		<pcr_primer_p2>CCATTTAGAATAATTGGGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATGCCAAATCTTGTCTTTAATAATATGTAACATATAATTTTATAAGAATGCGCATCCACCAAAATTTTTTTCATTTTTTTTTCTCCTTCCCACTTCTTAATTCTGAACTCCATCCTTTATCCAGCATTGCGAAGTTTCCTCAACACCTCTTTTTCCCATACACCCACCAAAAAAATGCCACCACCCACCCAAACTATTCCCCTTTCCCCCACCGGACTCGTCGATTTTTTCCCAATTATTCTAAATGG</canonical_amplicon>
		<polymorphic_amplicon>AATGCCAAATCTTGTCTTTAATAATATGTAACATATAATTTTATAAGAATGCGCATCCACCAAAATTTTTTTCATTTTTTTTTCTCCTTCCCACTTCTTAATTCTGAACTCCATCCTTTATCCAGCATTGCGAAGTTTCCTCAACACCTCTTTTTCCCATACACCCACCAAAAAAATGCCAYCACCCACCCAAACTATTCCCCTTTCCCCCACCGGACTCGTCGATTTTTTCCCAATTATTCTAAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32159</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>33682</contig_pos>
        <strand>+</strand>
        <context>AAACTATTCC[C/T]CTTTCCCCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCCCATACACCCACCAAAAAAATGCCACCACCCACCCAAACTATTCC</left_flank>
        <right_flank>CTTTCCCCCACCGGACTCGTCGATTTTTTCCCAATTATTCTAAATGGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGTTTCTTCCATAGTTAACTCATTTGTCAGTTTATCTATTGATCCTAGCCAGCAGAATATCTGCAAAAATTATTTTTTTTTTCAATCTAAAAAAAACTTCAAAAATACAAAAAATAACTTGATTTAGTATAGCGATTTTTCTATTTTTCCGCCTTCTACCCGGCAACTGGAATTTGTAAAGCTTTACAGATTTTTCCTACCTGTCTCACCATCATTTTCTGTAGGTTAACAAAAAGAAGAAGATGAATTCTACTAACTTCCTAAAGTCTTCTTTTAATAATTAACATCAAGCAGTGAATGCCAAATCTTGTCTTTAATAATATGTAACATATAATTTTATAAGAATGCGCATCCACCAAAATTTTTTTCATTTTTTTTTCTCCTTCCCACTTCTTAATTCTGAACTCCATCCTTTATCCAGCATTGCGAAGTTTCCTCAACACCTCTTTTTCCCATACACCCACCAAAAAAATGCCACCACCCACCCAAACTATTCCCCTTTCCCCCACCGGACTCGTCGATTTTTTCCCAATTATTCTAAATGGAAAACCGCTGTCATGTCGCCATCTCAACTCACCCCCTGAATGTTTTCAAGTCCCCCAACATTTTCCACCCAGAATTTTGTTTTCCAAACTTTTGTTCACTCCACACAAAGCCCTCGACACGCTTCGTGCAAACACAAAAAAAATTCTGATGTAAACTATCTATAATGTAATCGTTAGAAGTTTTATTGGACTAATAAAATTTGGAAGTTGGTGCTTGGTCCAGGTTGGATATAGATTTTTATGTGGTTTCGGCAGGTGGAAGAAAATGTAATATTGCTGATGGTTAGATATTGAAGAAAAGTATTTGAAAAGAAATGTTTCAGCTGCATGTCGCGTGAATCAGGGGAGAAAGAATCGGACGGCTCCTTCTTCGACTGAAAAAAACGGGGGTCAAATTTTTTTAATCATGATCACAGCTCTTAGAGCTAAAAAACATAGAAACTGACAAGGATT</canonical>
            <polymorphic>CCTGTTTCTTCCATAGTTAACTCATTTGTCAGTTTATCTATTGATCCTAGCCAGCAGAATATCTGCAAAAATTATTTTTTTTTTCAATCTAAAAAAAACTTCAAAAATACAAAAAATAACTTGATTTAGTATAGCGATTTTTCTATTTTTCCGCCTTCTACCCGGCAACTGGAATTTGTAAAGCTTTACAGATTTTTCCTACCTGTCTCACCATCATTTTCTGTAGGTTAACAAAAAGAAGAAGATGAATTCTACTAACTTCCTAAAGTCTTCTTTTAATAATTAACATCAAGCAGTGAATGCCAAATCTTGTCTTTAATAATATGTAACATATAATTTTATAAGAATGCGCATCCACCAAAATTTTTTTCATTTTTTTTTCTCCTTCCCACTTCTTAATTCTGAACTCCATCCTTTATCCAGCATTGCGAAGTTTCCTCAACACCTCTTTTTCCCATACACCCACCAAAAAAATGCCACCACCCACCCAAACTATTCCYCTTTCCCCCACCGGACTCGTCGATTTTTTCCCAATTATTCTAAATGGAAAACCGCTGTCATGTCGCCATCTCAACTCACCCCCTGAATGTTTTCAAGTCCCCCAACATTTTCCACCCAGAATTTTGTTTTCCAAACTTTTGTTCACTCCACACAAAGCCCTCGACACGCTTCGTGCAAACACAAAAAAAATTCTGATGTAAACTATCTATAATGTAATCGTTAGAAGTTTTATTGGACTAATAAAATTTGGAAGTTGGTGCTTGGTCCAGGTTGGATATAGATTTTTATGTGGTTTCGGCAGGTGGAAGAAAATGTAATATTGCTGATGGTTAGATATTGAAGAAAAGTATTTGAAAAGAAATGTTTCAGCTGCATGTCGCGTGAATCAGGGGAGAAAGAATCGGACGGCTCCTTCTTCGACTGAAAAAAACGGGGGTCAAATTTTTTTAATCATGATCACAGCTCTTAGAGCTAAAAAACATAGAAACTGACAAGGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCTGAACTCCATCCTTTATC</pcr_primer_p1>
		<pcr_primer_p2>GAGTGAACAAAAGTTTGGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATTCTGAACTCCATCCTTTATCCAGCATTGCGAAGTTTCCTCAACACCTCTTTTTCCCATACACCCACCAAAAAAATGCCACCACCCACCCAAACTATTCCCCTTTCCCCCACCGGACTCGTCGATTTTTTCCCAATTATTCTAAATGGAAAACCGCTGTCATGTCGCCATCTCAACTCACCCCCTGAATGTTTTCAAGTCCCCCAACATTTTCCACCCAGAATTTTGTTTTCCAAACTTTTGTTCACTC</canonical_amplicon>
		<polymorphic_amplicon>AATTCTGAACTCCATCCTTTATCCAGCATTGCGAAGTTTCCTCAACACCTCTTTTTCCCATACACCCACCAAAAAAATGCCACCACCCACCCAAACTATTCCYCTTTCCCCCACCGGACTCGTCGATTTTTTCCCAATTATTCTAAATGGAAAACCGCTGTCATGTCGCCATCTCAACTCACCCCCTGAATGTTTTCAAGTCCCCCAACATTTTCCACCCAGAATTTTGTTTTCCAAACTTTTGTTCACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32160</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>33865</contig_pos>
        <strand>+</strand>
        <context>GTGCAAACAC[A/G]AAAAAAATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACTTTTGTTCACTCCACACAAAGCCCTCGACACGCTTCGTGCAAACAC</left_flank>
        <right_flank>AAAAAAATTCTGATGTAAACTATCTATAATGTAATCGTTAGAAGTTTTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTACAGATTTTTCCTACCTGTCTCACCATCATTTTCTGTAGGTTAACAAAAAGAAGAAGATGAATTCTACTAACTTCCTAAAGTCTTCTTTTAATAATTAACATCAAGCAGTGAATGCCAAATCTTGTCTTTAATAATATGTAACATATAATTTTATAAGAATGCGCATCCACCAAAATTTTTTTCATTTTTTTTTCTCCTTCCCACTTCTTAATTCTGAACTCCATCCTTTATCCAGCATTGCGAAGTTTCCTCAACACCTCTTTTTCCCATACACCCACCAAAAAAATGCCACCACCCACCCAAACTATTCCCCTTTCCCCCACCGGACTCGTCGATTTTTTCCCAATTATTCTAAATGGAAAACCGCTGTCATGTCGCCATCTCAACTCACCCCCTGAATGTTTTCAAGTCCCCCAACATTTTCCACCCAGAATTTTGTTTTCCAAACTTTTGTTCACTCCACACAAAGCCCTCGACACGCTTCGTGCAAACACAAAAAAAATTCTGATGTAAACTATCTATAATGTAATCGTTAGAAGTTTTATTGGACTAATAAAATTTGGAAGTTGGTGCTTGGTCCAGGTTGGATATAGATTTTTATGTGGTTTCGGCAGGTGGAAGAAAATGTAATATTGCTGATGGTTAGATATTGAAGAAAAGTATTTGAAAAGAAATGTTTCAGCTGCATGTCGCGTGAATCAGGGGAGAAAGAATCGGACGGCTCCTTCTTCGACTGAAAAAAACGGGGGTCAAATTTTTTTAATCATGATCACAGCTCTTAGAGCTAAAAAACATAGAAACTGACAAGGATTGTAAAATTAACCTTGAAAAGGTGTCACAGCAAAAAAATGTTTCAAGTGCAAATAATTTTTAAATTTGGAACAATGCAAATTTAGTTTATATTTCGAAAATTGAACAAAATCTGCAACAGTGAAAGTTTTATGAGAACCTAGATGATCGTTGTTACAATTTTGCAATATTTAGCACCAAAAAAG</canonical>
            <polymorphic>CTTTACAGATTTTTCCTACCTGTCTCACCATCATTTTCTGTAGGTTAACAAAAAGAAGAAGATGAATTCTACTAACTTCCTAAAGTCTTCTTTTAATAATTAACATCAAGCAGTGAATGCCAAATCTTGTCTTTAATAATATGTAACATATAATTTTATAAGAATGCGCATCCACCAAAATTTTTTTCATTTTTTTTTCTCCTTCCCACTTCTTAATTCTGAACTCCATCCTTTATCCAGCATTGCGAAGTTTCCTCAACACCTCTTTTTCCCATACACCCACCAAAAAAATGCCACCACCCACCCAAACTATTCCCCTTTCCCCCACCGGACTCGTCGATTTTTTCCCAATTATTCTAAATGGAAAACCGCTGTCATGTCGCCATCTCAACTCACCCCCTGAATGTTTTCAAGTCCCCCAACATTTTCCACCCAGAATTTTGTTTTCCAAACTTTTGTTCACTCCACACAAAGCCCTCGACACGCTTCGTGCAAACACRAAAAAAATTCTGATGTAAACTATCTATAATGTAATCGTTAGAAGTTTTATTGGACTAATAAAATTTGGAAGTTGGTGCTTGGTCCAGGTTGGATATAGATTTTTATGTGGTTTCGGCAGGTGGAAGAAAATGTAATATTGCTGATGGTTAGATATTGAAGAAAAGTATTTGAAAAGAAATGTTTCAGCTGCATGTCGCGTGAATCAGGGGAGAAAGAATCGGACGGCTCCTTCTTCGACTGAAAAAAACGGGGGTCAAATTTTTTTAATCATGATCACAGCTCTTAGAGCTAAAAAACATAGAAACTGACAAGGATTGTAAAATTAACCTTGAAAAGGTGTCACAGCAAAAAAATGTTTCAAGTGCAAATAATTTTTAAATTTGGAACAATGCAAATTTAGTTTATATTTCGAAAATTGAACAAAATCTGCAACAGTGAAAGTTTTATGAGAACCTAGATGATCGTTGTTACAATTTTGCAATATTTAGCACCAAAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGTTTTCCAAACTTTTGTT</pcr_primer_p1>
		<pcr_primer_p2>GCTGAAACATTTCTTTTCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGTTTTCCAAACTTTTGTTCACTCCACACAAAGCCCTCGACACGCTTCGTGCAAACACAAAAAAAATTCTGATGTAAACTATCTATAATGTAATCGTTAGAAGTTTTATTGGACTAATAAAATTTGGAAGTTGGTGCTTGGTCCAGGTTGGATATAGATTTTTATGTGGTTTCGGCAGGTGGAAGAAAATGTAATATTGCTGATGGTTAGATATTGAAGAAAAGTATTTGAAAAGAAATGTTTCAGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGTTTTCCAAACTTTTGTTCACTCCACACAAAGCCCTCGACACGCTTCGTGCAAACACRAAAAAAATTCTGATGTAAACTATCTATAATGTAATCGTTAGAAGTTTTATTGGACTAATAAAATTTGGAAGTTGGTGCTTGGTCCAGGTTGGATATAGATTTTTATGTGGTTTCGGCAGGTGGAAGAAAATGTAATATTGCTGATGGTTAGATATTGAAGAAAAGTATTTGAAAAGAAATGTTTCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32161</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>33908</contig_pos>
        <strand></strand>
        <context>AATCGTTAGA[A/G]GTTTTATTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAACACAAAAAAAATTCTGATGTAAACTATCTATAATGTAATCGTTAGA</left_flank>
        <right_flank>GTTTTATTGGACTAATAAAATTTGGAAGTTGGTGCTTGGTCCAGGTTGGA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTAACAAAAAGAAGAAGATGAATTCTACTAACTTCCTAAAGTCTTCTTTTAATAATTAACATCAAGCAGTGAATGCCAAATCTTGTCTTTAATAATATGTAACATATAATTTTATAAGAATGCGCATCCACCAAAATTTTTTTCATTTTTTTTTCTCCTTCCCACTTCTTAATTCTGAACTCCATCCTTTATCCAGCATTGCGAAGTTTCCTCAACACCTCTTTTTCCCATACACCCACCAAAAAAATGCCACCACCCACCCAAACTATTCCCCTTTCCCCCACCGGACTCGTCGATTTTTTCCCAATTATTCTAAATGGAAAACCGCTGTCATGTCGCCATCTCAACTCACCCCCTGAATGTTTTCAAGTCCCCCAACATTTTCCACCCAGAATTTTGTTTTCCAAACTTTTGTTCACTCCACACAAAGCCCTCGACACGCTTCGTGCAAACACAAAAAAAATTCTGATGTAAACTATCTATAATGTAATCGTTAGAAGTTTTATTGGACTAATAAAATTTGGAAGTTGGTGCTTGGTCCAGGTTGGATATAGATTTTTATGTGGTTTCGGCAGGTGGAAGAAAATGTAATATTGCTGATGGTTAGATATTGAAGAAAAGTATTTGAAAAGAAATGTTTCAGCTGCATGTCGCGTGAATCAGGGGAGAAAGAATCGGACGGCTCCTTCTTCGACTGAAAAAAACGGGGGTCAAATTTTTTTAATCATGATCACAGCTCTTAGAGCTAAAAAACATAGAAACTGACAAGGATTGTAAAATTAACCTTGAAAAGGTGTCACAGCAAAAAAATGTTTCAAGTGCAAATAATTTTTAAATTTGGAACAATGCAAATTTAGTTTATATTTCGAAAATTGAACAAAATCTGCAACAGTGAAAGTTTTATGAGAACCTAGATGATCGTTGTTACAATTTTGCAATATTTAGCACCAAAAAAGATAACCTGTTTGTATTCTCAATGTTTAAAGAATAGGATAATGG</canonical>
            <polymorphic>GTTAACAAAAAGAAGAAGATGAATTCTACTAACTTCCTAAAGTCTTCTTTTAATAATTAACATCAAGCAGTGAATGCCAAATCTTGTCTTTAATAATATGTAACATATAATTTTATAAGAATGCGCATCCACCAAAATTTTTTTCATTTTTTTTTCTCCTTCCCACTTCTTAATTCTGAACTCCATCCTTTATCCAGCATTGCGAAGTTTCCTCAACACCTCTTTTTCCCATACACCCACCAAAAAAATGCCACCACCCACCCAAACTATTCCCCTTTCCCCCACCGGACTCGTCGATTTTTTCCCAATTATTCTAAATGGAAAACCGCTGTCATGTCGCCATCTCAACTCACCCCCTGAATGTTTTCAAGTCCCCCAACATTTTCCACCCAGAATTTTGTTTTCCAAACTTTTGTTCACTCCACACAAAGCCCTCGACACGCTTCGTGCAAACACAAAAAAAATTCTGATGTAAACTATCTATAATGTAATCGTTAGARGTTTTATTGGACTAATAAAATTTGGAAGTTGGTGCTTGGTCCAGGTTGGATATAGATTTTTATGTGGTTTCGGCAGGTGGAAGAAAATGTAATATTGCTGATGGTTAGATATTGAAGAAAAGTATTTGAAAAGAAATGTTTCAGCTGCATGTCGCGTGAATCAGGGGAGAAAGAATCGGACGGCTCCTTCTTCGACTGAAAAAAACGGGGGTCAAATTTTTTTAATCATGATCACAGCTCTTAGAGCTAAAAAACATAGAAACTGACAAGGATTGTAAAATTAACCTTGAAAAGGTGTCACAGCAAAAAAATGTTTCAAGTGCAAATAATTTTTAAATTTGGAACAATGCAAATTTAGTTTATATTTCGAAAATTGAACAAAATCTGCAACAGTGAAAGTTTTATGAGAACCTAGATGATCGTTGTTACAATTTTGCAATATTTAGCACCAAAAAAGATAACCTGTTTGTATTCTCAATGTTTAAAGAATAGGATAATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGTTTTCCAAACTTTTGTT</pcr_primer_p1>
		<pcr_primer_p2>GCTGAAACATTTCTTTTCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGTTTTCCAAACTTTTGTTCACTCCACACAAAGCCCTCGACACGCTTCGTGCAAACACAAAAAAAATTCTGATGTAAACTATCTATAATGTAATCGTTAGAAGTTTTATTGGACTAATAAAATTTGGAAGTTGGTGCTTGGTCCAGGTTGGATATAGATTTTTATGTGGTTTCGGCAGGTGGAAGAAAATGTAATATTGCTGATGGTTAGATATTGAAGAAAAGTATTTGAAAAGAAATGTTTCAGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGTTTTCCAAACTTTTGTTCACTCCACACAAAGCCCTCGACACGCTTCGTGCAAACACAAAAAAAATTCTGATGTAAACTATCTATAATGTAATCGTTAGARGTTTTATTGGACTAATAAAATTTGGAAGTTGGTGCTTGGTCCAGGTTGGATATAGATTTTTATGTGGTTTCGGCAGGTGGAAGAAAATGTAATATTGCTGATGGTTAGATATTGAAGAAAAGTATTTGAAAAGAAATGTTTCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32162</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>107355</contig_pos>
        <strand></strand>
        <context>acacattctc[T/G]gaagaaatca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CTCTGAAAACTTATCAGGATCGAAAATGAAACACATTAAGACACATTCTC</left_flank>
        <right_flank>GAAGAAATCATCTTAAGTCCTATTGTTCACTGTACAGAAAAATTCAAACT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTCAAGAATCTTCTCAAGTCCTCCAACTCCAACATCCACTTTGCCTTCTAGGTCATAAAAATTTTTCATCCGATTTTTTAAATAGAGTTACCACAACCATCATCTTCGTCCTCTGAAGAGCTCAGTTCCTTTTCTGACATCTCATCTGCACAAGACGTAGATAGTGAAGATTGTGATTGTCTTTCCACATCATCCTTGACCTTTTCCGAGTTCTGAATTCCATCCTTCTCATGTTTGATTGGAGTGTGTGGAATCACATTGATCGAGGGGACGCCAAGCGCGTCGTTGAAGCTGTGGTCTTCCTGCTGTAAAAATTTCAGATAGAAATTAATAATTTGAAAATTCCATACCGCTGAATACGGCACTAGAGTTGTAGGACGTTTCACCTGTTTCACAGGCACTGCCGTACCACACTCTTCAACTTGAATATCGAGCGAAACACTCTGGCTCTGAAAACTTATCAGGATCGAAAATGAAACACATTAAGACACATTCTCTGAAGAAATCATCTTAAGTCCTATTGTTCACTGTACAGAAAAATTCAAACTAGTTTTTAAGCATTAACATTACATTTATATTTAGATTGTATGGACACTTCTTGCAAAAAATGTACATCTGGTCCGAACCCATCAGATATTGTCCAAATGTGGTAAAAAAAGAAAATTATTCTCGATGAAGATAATGATTTGATTCAAGTCAGAATAGGTTATTCTTGCTGTTTTAAACGTTTTCGGGTTAAAACAAAAATTTTAACTCGTTTCCTTTCAGCTGAACAATTTTCATTTCTGATCCGATTTCCAAAAAAATGAAAGCATTTTTTATCGCTTTTTTGGTGCTTCTGAAAATACACGAAGACAATAAGCACGGATTCTGAAACTTTGCCGAAATACTACACATCAAGAATACTACATCTGGTACAAATTTGAACAACATTGGAGATGGTCGAGTTTGGGCGATTTCTAGGGCAAATAATTCGGAGTGCACAGGTCATTGGGGTA</canonical>
            <polymorphic>GATTCAAGAATCTTCTCAAGTCCTCCAACTCCAACATCCACTTTGCCTTCTAGGTCATAAAAATTTTTCATCCGATTTTTTAAATAGAGTTACCACAACCATCATCTTCGTCCTCTGAAGAGCTCAGTTCCTTTTCTGACATCTCATCTGCACAAGACGTAGATAGTGAAGATTGTGATTGTCTTTCCACATCATCCTTGACCTTTTCCGAGTTCTGAATTCCATCCTTCTCATGTTTGATTGGAGTGTGTGGAATCACATTGATCGAGGGGACGCCAAGCGCGTCGTTGAAGCTGTGGTCTTCCTGCTGTAAAAATTTCAGATAGAAATTAATAATTTGAAAATTCCATACCGCTGAATACGGCACTAGAGTTGTAGGACGTTTCACCTGTTTCACAGGCACTGCCGTACCACACTCTTCAACTTGAATATCGAGCGAAACACTCTGGCTCTGAAAACTTATCAGGATCGAAAATGAAACACATTAAGACACATTCTCKGAAGAAATCATCTTAAGTCCTATTGTTCACTGTACAGAAAAATTCAAACTAGTTTTTAAGCATTAACATTACATTTATATTTAGATTGTATGGACACTTCTTGCAAAAAATGTACATCTGGTCCGAACCCATCAGATATTGTCCAAATGTGGTAAAAAAAGAAAATTATTCTCGATGAAGATAATGATTTGATTCAAGTCAGAATAGGTTATTCTTGCTGTTTTAAACGTTTTCGGGTTAAAACAAAAATTTTAACTCGTTTCCTTTCAGCTGAACAATTTTCATTTCTGATCCGATTTCCAAAAAAATGAAAGCATTTTTTATCGCTTTTTTGGTGCTTCTGAAAATACACGAAGACAATAAGCACGGATTCTGAAACTTTGCCGAAATACTACACATCAAGAATACTACATCTGGTACAAATTTGAACAACATTGGAGATGGTCGAGTTTGGGCGATTTCTAGGGCAAATAATTCGGAGTGCACAGGTCATTGGGGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTCTGGCTCTGAAAACTTAT</pcr_primer_p1>
		<pcr_primer_p2>ACATAATTCGGAGGGTACAAC</pcr_primer_p2>
		<pcr_amplicon_size>710</pcr_amplicon_size>
		<canonical_amplicon>CACTCTGGCTCTGAAAACTTATCAGGATCGAAAATGAAACACATTAAGACACATTCTCTGAAGAAATCATCTTAAGTCC</canonical_amplicon>
		<polymorphic_amplicon>CACTCTGGCTCTGAAAACTTATCAGGATCGAAAATGAAACACATTAAGACACATTCTCKGAAGAAATCATCTTAAGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32163</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>107714</contig_pos>
        <strand></strand>
        <context>acacgaagac[A/G]ataagcacgg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAAGCATTTTTTATCGCTTTTTTGGTGCTTCTGAAAATACACGAAGAC</left_flank>
        <right_flank>ATAAGCACGGATTCTGAAACTTTGCCGAAATACTACACATCAAGAATACT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACGGCACTAGAGTTGTAGGACGTTTCACCTGTTTCACAGGCACTGCCGTACCACACTCTTCAACTTGAATATCGAGCGAAACACTCTGGCTCTGAAAACTTATCAGGATCGAAAATGAAACACATTAAGACACATTCTCTGAAGAAATCATCTTAAGTCCTATTGTTCACTGTACAGAAAAATTCAAACTAGTTTTTAAGCATTAACATTACATTTATATTTAGATTGTATGGACACTTCTTGCAAAAAATGTACATCTGGTCCGAACCCATCAGATATTGTCCAAATGTGGTAAAAAAAGAAAATTATTCTCGATGAAGATAATGATTTGATTCAAGTCAGAATAGGTTATTCTTGCTGTTTTAAACGTTTTCGGGTTAAAACAAAAATTTTAACTCGTTTCCTTTCAGCTGAACAATTTTCATTTCTGATCCGATTTCCAAAAAAATGAAAGCATTTTTTATCGCTTTTTTGGTGCTTCTGAAAATACACGAAGACAATAAGCACGGATTCTGAAACTTTGCCGAAATACTACACATCAAGAATACTACATCTGGTACAAATTTGAACAACATTGGAGATGGTCGAGTTTGGGCGATTTCTAGGGCAAATAATTCGGAGTGCACAGGTCATTGGGGTACAAAGCAATTTAGGGGTACAAAATCTTCAATTCGGGTGTACAAAATACCTGAAAAAGGCTCAGTTTTGTACCCCCGAATTGTGAATTTTGTACACCTGAATTACTTTGTACCCCGTTGTACCCCCGAATTGTTGTACCCTCCGAATTATGTGCCGACTTCTAGCTGCCATGTACTCCCCCACATTTTTCGCACTTTCTGGCCTAAAACTGGCCTTATGCCCAGAATATGCAAACTCACCTGAATACTTTCCAGTGTCATTTTTTGCTCTAGTTTTGAATCGGATACTATCTTTTTTGCAGTAGCGTTGAAAGTTTCATACTTGCAACGGGCCGGGGTTTTTTCAGAATTTTCAGAGCCC</canonical>
            <polymorphic>TACGGCACTAGAGTTGTAGGACGTTTCACCTGTTTCACAGGCACTGCCGTACCACACTCTTCAACTTGAATATCGAGCGAAACACTCTGGCTCTGAAAACTTATCAGGATCGAAAATGAAACACATTAAGACACATTCTCTGAAGAAATCATCTTAAGTCCTATTGTTCACTGTACAGAAAAATTCAAACTAGTTTTTAAGCATTAACATTACATTTATATTTAGATTGTATGGACACTTCTTGCAAAAAATGTACATCTGGTCCGAACCCATCAGATATTGTCCAAATGTGGTAAAAAAAGAAAATTATTCTCGATGAAGATAATGATTTGATTCAAGTCAGAATAGGTTATTCTTGCTGTTTTAAACGTTTTCGGGTTAAAACAAAAATTTTAACTCGTTTCCTTTCAGCTGAACAATTTTCATTTCTGATCCGATTTCCAAAAAAATGAAAGCATTTTTTATCGCTTTTTTGGTGCTTCTGAAAATACACGAAGACRATAAGCACGGATTCTGAAACTTTGCCGAAATACTACACATCAAGAATACTACATCTGGTACAAATTTGAACAACATTGGAGATGGTCGAGTTTGGGCGATTTCTAGGGCAAATAATTCGGAGTGCACAGGTCATTGGGGTACAAAGCAATTTAGGGGTACAAAATCTTCAATTCGGGTGTACAAAATACCTGAAAAAGGCTCAGTTTTGTACCCCCGAATTGTGAATTTTGTACACCTGAATTACTTTGTACCCCGTTGTACCCCCGAATTGTTGTACCCTCCGAATTATGTGCCGACTTCTAGCTGCCATGTACTCCCCCACATTTTTCGCACTTTCTGGCCTAAAACTGGCCTTATGCCCAGAATATGCAAACTCACCTGAATACTTTCCAGTGTCATTTTTTGCTCTAGTTTTGAATCGGATACTATCTTTTTTGCAGTAGCGTTGAAAGTTTCATACTTGCAACGGGCCGGGGTTTTTTCAGAATTTTCAGAGCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGATCGAAAATGAAACACA</pcr_primer_p1>
		<pcr_primer_p2>ACATAATTCGGAGGGTACAAC</pcr_primer_p2>
		<pcr_amplicon_size>687</pcr_amplicon_size>
		<canonical_amplicon>AGGATCGAAAATGAAACACATTAAGACACATTCTCTGAAGAAATCATCTTAAGTCCTATTGTTCACTGTACAGAAAAATTCAAACTAGTTTTTAAGCATTAACATTACATTTATATTTAGATTGTATGGACACTTCTTGCAAAAAATGTACATCTGGTCCGAACCCATCAGATATTGTCCAAATGTGGTAAAAAAAGAAAATTATTCTCGATGAAGATAATGATTTGATTCAAGTCAGAATAGGTTATTCTTGCTGTTTTAAACGTTTTCGGGTTAAAACAAAAATTTTAACTCGTTTCCTTTCAGCTGAACAATTTTCATTTCTGATCCGATTTCCAAAAAAATGAAAGCATTTTTTATCGCTTTTTTGGTGCTTCTGAAAATACACGAAGACAATAAGCACGGATTCTGAAACTTTGCCGAAATACTACACATCAAGAATACTACATCTGGTACAAATTTGAACAACATTGGAGATGGTCGAGTTTGGGCGATTTCTAGGGCAAATAATTCGGAGTGCACAGGTCATTGGGGTACAAAGCAATTTAGGGGTACAAAATCTTCAATTCGGGTGTACAAAATACCTGAAAAAGGCTCAGTTTTGTACCCCCGAATTGTGAATTTTGTACACCTGAATTACTTTGTACCCCGTTGTACCCCCGAATTGTTGTACCCTCCGAATTATGT</canonical_amplicon>
		<polymorphic_amplicon>AGGATCGAAAATGAAACACATTAAGACACATTCTCTGAAGAAATCATCTTAAGTCCTATTGTTCACTGTACAGAAAAATTCAAACTAGTTTTTAAGCATTAACATTACATTTATATTTAGATTGTATGGACACTTCTTGCAAAAAATGTACATCTGGTCCGAACCCATCAGATATTGTCCAAATGTGGTAAAAAAAGAAAATTATTCTCGATGAAGATAATGATTTGATTCAAGTCAGAATAGGTTATTCTTGCTGTTTTAAACGTTTTCGGGTTAAAACAAAAATTTTAACTCGTTTCCTTTCAGCTGAACAATTTTCATTTCTGATCCGATTTCCAAAAAAATGAAAGCATTTTTTATCGCTTTTTTGGTGCTTCTGAAAATACACGAAGACRATAAGCACGGATTCTGAAACTTTGCCGAAATACTACACATCAAGAATACTACATCTGGTACAAATTTGAACAACATTGGAGATGGTCGAGTTTGGGCGATTTCTAGGGCAAATAATTCGGAGTGCACAGGTCATTGGGGTACAAAGCAATTTAGGGGTACAAAATCTTCAATTCGGGTGTACAAAATACCTGAAAAAGGCTCAGTTTTGTACCCCCGAATTGTGAATTTTGTACACCTGAATTACTTTGTACCCCGTTGTACCCCCGAATTGTTGTACCCTCCGAATTATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32164</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>161794</contig_pos>
        <strand>+</strand>
        <context>GCTGCGTTAA[A/G]ACACAAAGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAACAAAAGTTTACATTTTGAGGAGTATTACAGAGCTTAGCTGCGTTAA</left_flank>
        <right_flank>ACACAAAGAGATTTTTGAAAAGGCATTTTGTAAAATTGTTTCTTCCCGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAAATACAGAAAATAATAAAAAAGTAACAGAAGTTTACAAAGAAATGCTCACGGGGCAAATTCTGGGGGAAAGAGAAATTTTCAAATGTCAAAAAATTGACCAAAACAAAAATTACAAACTTTGGGAAAAGTAACGATGAAATTTACATATTCACATTTTTGAGGGGTTAGGTCAGGGTCAGGATACTGCTCGAAATATATATAGATAAGGGGAAAAATGAAAAAGTTAGCATATATGAAAGTTAAACTGATCTGATAAAGATGGAAAAGAAAAATGAGTGCACGTGACAATCTTAGGGAAGAAAGGAGAAAAAAGTGAAAAAAAAAGAACTGATCTCAAGTTAAAAAAAGCATTGATACTGTAACTTTGCATCAATGGCATGAAAATGAAAAAAAATTAAGTGAACAGGTTACCATAGCGTCAAGATTAAATGATTGAAAAAACAGTAACAAAAGTTTACATTTTGAGGAGTATTACAGAGCTTAGCTGCGTTAAGACACAAAGAGATTTTTGAAAAGGCATTTTGTAAAATTGTTTCTTCCCGCGAAGGCTGACTTTAGACTAGCCTTTAAAGTCGTCACATGTCTTTGAAGTCAAATTTGAGCAAAGTCAATGGGTACATTAGGGGAGGGGTGAGTTTGTTTTTTAGAATGGATGGTTACTAAAATCAGCACCGAGCGGAATGTCAAACGGGCTGGTTTCGAAAATCTGATCGTTTGATGCCGATGAAGATGAGTTGGCCGGAGCTTGTTTGGCGAAGTATTTCTCGAGTTTCACTGAAAATTTTGAAATGAGTAAAGTGGTTGATTGTTGAACAAAACTAACAATTTCACACAAAGAAAACAGGATAAAAATGTGATCATGCACAAGTGCGGATAATAATTTATATTGTATTGCAATTGGGTTGATGGGAGGTAGGGTAAATGATAAAACGATGGACGCCGATGATGGATTGCTTGTTGTTCAAATTGGCGATGAATTGATTATTGAACTGAA</canonical>
            <polymorphic>AAGAAAATACAGAAAATAATAAAAAAGTAACAGAAGTTTACAAAGAAATGCTCACGGGGCAAATTCTGGGGGAAAGAGAAATTTTCAAATGTCAAAAAATTGACCAAAACAAAAATTACAAACTTTGGGAAAAGTAACGATGAAATTTACATATTCACATTTTTGAGGGGTTAGGTCAGGGTCAGGATACTGCTCGAAATATATATAGATAAGGGGAAAAATGAAAAAGTTAGCATATATGAAAGTTAAACTGATCTGATAAAGATGGAAAAGAAAAATGAGTGCACGTGACAATCTTAGGGAAGAAAGGAGAAAAAAGTGAAAAAAAAAGAACTGATCTCAAGTTAAAAAAAGCATTGATACTGTAACTTTGCATCAATGGCATGAAAATGAAAAAAAATTAAGTGAACAGGTTACCATAGCGTCAAGATTAAATGATTGAAAAAACAGTAACAAAAGTTTACATTTTGAGGAGTATTACAGAGCTTAGCTGCGTTAARACACAAAGAGATTTTTGAAAAGGCATTTTGTAAAATTGTTTCTTCCCGCGAAGGCTGACTTTAGACTAGCCTTTAAAGTCGTCACATGTCTTTGAAGTCAAATTTGAGCAAAGTCAATGGGTACATTAGGGGAGGGGTGAGTTTGTTTTTTAGAATGGATGGTTACTAAAATCAGCACCGAGCGGAATGTCAAACGGGCTGGTTTCGAAAATCTGATCGTTTGATGCCGATGAAGATGAGTTGGCCGGAGCTTGTTTGGCGAAGTATTTCTCGAGTTTCACTGAAAATTTTGAAATGAGTAAAGTGGTTGATTGTTGAACAAAACTAACAATTTCACACAAAGAAAACAGGATAAAAATGTGATCATGCACAAGTGCGGATAATAATTTATATTGTATTGCAATTGGGTTGATGGGAGGTAGGGTAAATGATAAAACGATGGACGCCGATGATGGATTGCTTGTTGTTCAAATTGGCGATGAATTGATTATTGAACTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGATACTGTAACTTTGCATCAAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTGACTTCAAAGACATGTGAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTGATACTGTAACTTTGCATCAATGGCATGAAAATGAAAAAAAATTAAGTGAACAGGTTACCATAGCGTCAAGATTAAATGATTGAAAAAACAGTAACAAAAGTTTACATTTTGAGGAGTATTACAGAGCTTAGCTGCGTTAAGACACAAAGAGATTTTTGAAAAGGCATTTTGTAAAATTGTTTCTTCCCGCGAAGGCTGACTTTAGACTAGCCTTTAAAGTCGTCACATGTCTTTGAAGTCAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTGATACTGTAACTTTGCATCAATGGCATGAAAATGAAAAAAAATTAAGTGAACAGGTTACCATAGCGTCAAGATTAAATGATTGAAAAAACAGTAACAAAAGTTTACATTTTGAGGAGTATTACAGAGCTTAGCTGCGTTAARACACAAAGAGATTTTTGAAAAGGCATTTTGTAAAATTGTTTCTTCCCGCGAAGGCTGACTTTAGACTAGCCTTTAAAGTCGTCACATGTCTTTGAAGTCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32165</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>166892</contig_pos>
        <strand></strand>
        <context>CCActgttgc[G/A]ctccaaatga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTTTCGGTTGCTGTTTGGTTGAAATTGAAACTCGTACATCCACTGTTGC</left_flank>
        <right_flank>CTCCAAATGAGAAGAGGCGTGACGAAGTTTGAGGCCGGTAAAAAAACAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTAGAGAGGGCTCACTCAGTGTCTCTCTGGCTTATGCCCTTTGCATCCGGACACACTGTGTATTGTCTGTTTTTCTAATCTTACACAATTTGGTTTCTCTGTTTTACTTGATTAGCCGAACCAAGCTTTTAGTATCTCCTTAATACTAGTCTCAATAGAAAACCTATAAAATTTATCATTTTTTGAAGTAAACCCTATTTCAAACTCTAAACTTACCTTCGGATCATAAAAGAATAGGAAAGCCACTCAATATGTTATATATGGCCGATGTCTAGAACTAATGACATTTTCTAAGTGGCATATTAGATTTTCTACATGTCTAGGACTATACTTGGGCGTTGCTAATCTTTAATCTGGCCAGAATAAGAGATTTATGTCCTATAAGAAGGGAATCCTTACAACCTACACAATGTCGCATTCTATTTTGGACCAGAACACAAAGATTTGAATTTTCGGTTGCTGTTTGGTTGAAATTGAAACTCGTACATCCACTGTTGCGCTCCAAATGAGAAGAGGCGTGACGAAGTTTGAGGCCGGTAAAAAAACAAATAAATTGGGAGCGAGAAAATGCAATCTCAGGAATAGTGACACAGAGTCCAATTTTGGATAATTACGCCACGCTAAATTTCCAGTTGACACGCTCTTTTCCCATTAGAGTGAAACCGCACACAACAGTTGATCGGAGCCTGCGCATCTTCTTTTAGAGTGCAATTGTCAATTACACAGAAGTTTCCTGCTCTACAAAACAAAAATTGATATTCGATTTTGTAGTTGACAACTTTTTTGTTGTAAAAACTCATTATATTGAGGTAGAACGTTTGAAAGTGTTTGAATCAGTGCTATTTCTGAACTTTCTGGCATTTGGTTATGCACGGTTCATCTCATTTTGACGAGTTTGTGGGAAAAAGTTGTCAGCTACCAAATTAAAGGCTTGTTTTTGTTTTGGGACTTAACAATGTTGGAACCGATCTAGCATTATCTAAAACATCTTTCAGACCT</canonical>
            <polymorphic>TCTAGAGAGGGCTCACTCAGTGTCTCTCTGGCTTATGCCCTTTGCATCCGGACACACTGTGTATTGTCTGTTTTTCTAATCTTACACAATTTGGTTTCTCTGTTTTACTTGATTAGCCGAACCAAGCTTTTAGTATCTCCTTAATACTAGTCTCAATAGAAAACCTATAAAATTTATCATTTTTTGAAGTAAACCCTATTTCAAACTCTAAACTTACCTTCGGATCATAAAAGAATAGGAAAGCCACTCAATATGTTATATATGGCCGATGTCTAGAACTAATGACATTTTCTAAGTGGCATATTAGATTTTCTACATGTCTAGGACTATACTTGGGCGTTGCTAATCTTTAATCTGGCCAGAATAAGAGATTTATGTCCTATAAGAAGGGAATCCTTACAACCTACACAATGTCGCATTCTATTTTGGACCAGAACACAAAGATTTGAATTTTCGGTTGCTGTTTGGTTGAAATTGAAACTCGTACATCCACTGTTGCRCTCCAAATGAGAAGAGGCGTGACGAAGTTTGAGGCCGGTAAAAAAACAAATAAATTGGGAGCGAGAAAATGCAATCTCAGGAATAGTGACACAGAGTCCAATTTTGGATAATTACGCCACGCTAAATTTCCAGTTGACACGCTCTTTTCCCATTAGAGTGAAACCGCACACAACAGTTGATCGGAGCCTGCGCATCTTCTTTTAGAGTGCAATTGTCAATTACACAGAAGTTTCCTGCTCTACAAAACAAAAATTGATATTCGATTTTGTAGTTGACAACTTTTTTGTTGTAAAAACTCATTATATTGAGGTAGAACGTTTGAAAGTGTTTGAATCAGTGCTATTTCTGAACTTTCTGGCATTTGGTTATGCACGGTTCATCTCATTTTGACGAGTTTGTGGGAAAAAGTTGTCAGCTACCAAATTAAAGGCTTGTTTTTGTTTTGGGACTTAACAATGTTGGAACCGATCTAGCATTATCTAAAACATCTTTCAGACCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 308 192</canonical_bands>
                <polymorphic_bands>692 308</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAGAACACAAAGATTTGAA</pcr_primer_p1>
		<pcr_primer_p2>CAATTGCACTCTAAAAGAAGATG</pcr_primer_p2>
		<pcr_amplicon_size>286</pcr_amplicon_size>
		<canonical_amplicon>ACCAGAACACAAAGATTTGAATTTTCGGTTGCTGTTTGGTTGAAATTGAAACTCGTACATCCACTGTTGCGCTCCAAATGAGAAGAGGCGTGACGAAGTTTGAGGCCGGTAAAAAAACAAATAAATTGGGAGCGAGAAAATGCAATCTCAGGAATAGTGACACAGAGTCCAATTTTGGATAATTACGCCACGCTAAATTTCCAGTTGACACGCTCTTTTCCCATTAGAGTGAAACCGCACACAACAGTTGATCGGAGCCTGCGCATCTTCTTTTAGAGTGCAATTG</canonical_amplicon>
		<polymorphic_amplicon>ACCAGAACACAAAGATTTGAATTTTCGGTTGCTGTTTGGTTGAAATTGAAACTCGTACATCCACTGTTGCRCTCCAAATGAGAAGAGGCGTGACGAAGTTTGAGGCCGGTAAAAAAACAAATAAATTGGGAGCGAGAAAATGCAATCTCAGGAATAGTGACACAGAGTCCAATTTTGGATAATTACGCCACGCTAAATTTCCAGTTGACACGCTCTTTTCCCATTAGAGTGAAACCGCACACAACAGTTGATCGGAGCCTGCGCATCTTCTTTTAGAGTGCAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32166</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>178618</contig_pos>
        <strand>+</strand>
        <context>GGTAATCAAT[A/G]GAGAAACAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATATGATTTATTAATTCAGTTGAAGTCCAAGAAGGTGGTGGTAATCAAT</left_flank>
        <right_flank>GAGAAACAAATATATGTGGGAGAATTCTTGAAAATTTGAAACAAAACTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACAGGGGAACAATTGAAGAAAAATAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGAAAGTAAGCGGAGCCATTTAAAAATTTATAGAGAAGAATTAGTTAAGCTTTTAGCCTACGATGTCGAATGGAGAACATATTGAGGATAGAAAGACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATAAACAACGCTGGAAAATAACAACTCTGGAAAATAAACAACGCTGGAAAATAACAACGCTGGAAAATACTTGCTGACAAGCTAAGTTGTATAAAAATGCATTGCCATTCTTGTTCCACTGATTTCAGTAGTAATTTTGAAACTTCTGAAGTTTTTTTTTTGTTTTATATGATTTATTAATTCAGTTGAAGTCCAAGAAGGTGGTGGTAATCAATAGAGAAACAAATATATGTGGGAGAATTCTTGAAAATTTGAAACAAAACTAGTTTTTGAGAAACAGATTTGATCACTCTATGGTTATTCTGAAACAGTTTTCTCACCGGTATTGTGGTATAAAAATTAATTTCTTCTTCTTCTGGAACTCCACTCCACGTCCACGTGCCCAGATCATACTGTGACTATGAAACTTCATCTTTAAAAGACCCTAACCCTTGTAGGCATCAGATCTCTCAAGACATTAACCCCTTACTCCTGAAAAAGTGAACATTGCTTTTTCGTCCCATCAATTGTTATTTTTTCCCAACGGACCACTTTGATCTTTACCGAACAACACTTCAAAAAAATAGTGTAATGTGAAGTGGAGTCTGTGGCTCTTTGACATTGAAAAAAAAGATCCCTTTCATTTTTTTTGCTTCCCCAATGCACTTTAAGATATTTTTTCTTTCCGCAGTTTCTTCTCCATCACTAAAGGTCAAACCATTGGAATTTGACAGGAC</canonical>
            <polymorphic>GTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACAGGGGAACAATTGAAGAAAAATAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGAAAGTAAGCGGAGCCATTTAAAAATTTATAGAGAAGAATTAGTTAAGCTTTTAGCCTACGATGTCGAATGGAGAACATATTGAGGATAGAAAGACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATAAACAACGCTGGAAAATAACAACTCTGGAAAATAAACAACGCTGGAAAATAACAACGCTGGAAAATACTTGCTGACAAGCTAAGTTGTATAAAAATGCATTGCCATTCTTGTTCCACTGATTTCAGTAGTAATTTTGAAACTTCTGAAGTTTTTTTTTTGTTTTATATGATTTATTAATTCAGTTGAAGTCCAAGAAGGTGGTGGTAATCAATRGAGAAACAAATATATGTGGGAGAATTCTTGAAAATTTGAAACAAAACTAGTTTTTGAGAAACAGATTTGATCACTCTATGGTTATTCTGAAACAGTTTTCTCACCGGTATTGTGGTATAAAAATTAATTTCTTCTTCTTCTGGAACTCCACTCCACGTCCACGTGCCCAGATCATACTGTGACTATGAAACTTCATCTTTAAAAGACCCTAACCCTTGTAGGCATCAGATCTCTCAAGACATTAACCCCTTACTCCTGAAAAAGTGAACATTGCTTTTTCGTCCCATCAATTGTTATTTTTTCCCAACGGACCACTTTGATCTTTACCGAACAACACTTCAAAAAAATAGTGTAATGTGAAGTGGAGTCTGTGGCTCTTTGACATTGAAAAAAAAGATCCCTTTCATTTTTTTTGCTTCCCCAATGCACTTTAAGATATTTTTTCTTTCCGCAGTTTCTTCTCCATCACTAAAGGTCAAACCATTGGAATTTGACAGGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGCTGACAAGCTAAGTTGTAT</pcr_primer_p1>
		<pcr_primer_p2>GGTGAGAAAACTGTTTCAGAATA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTTGCTGACAAGCTAAGTTGTATAAAAATGCATTGCCATTCTTGTTCCACTGATTTCAGTAGTAATTTTGAAACTTCTGAAGTTTTTTTTTTGTTTTATATGATTTATTAATTCAGTTGAAGTCCAAGAAGGTGGTGGTAATCAATAGAGAAACAAATATATGTGGGAGAATTCTTGAAAATTTGAAACAAAACTAGTTTTTGAGAAACAGATTTGATCACTCTATGGTTATTCTGAAACAGTTTTCTCACC</canonical_amplicon>
		<polymorphic_amplicon>CTTGCTGACAAGCTAAGTTGTATAAAAATGCATTGCCATTCTTGTTCCACTGATTTCAGTAGTAATTTTGAAACTTCTGAAGTTTTTTTTTTGTTTTATATGATTTATTAATTCAGTTGAAGTCCAAGAAGGTGGTGGTAATCAATRGAGAAACAAATATATGTGGGAGAATTCTTGAAAATTTGAAACAAAACTAGTTTTTGAGAAACAGATTTGATCACTCTATGGTTATTCTGAAACAGTTTTCTCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32167</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>178949</contig_pos>
        <strand>+</strand>
        <context>TCTTTACCGA[A/T]CAACACTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCCCATCAATTGTTATTTTTTCCCAACGGACCACTTTGATCTTTACCGA</left_flank>
        <right_flank>CAACACTTCAAAAAAATAGTGTAATGTGAAGTGGAGTCTGTGGCTCTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATAACAACGCTGGAAAATACTTGCTGACAAGCTAAGTTGTATAAAAATGCATTGCCATTCTTGTTCCACTGATTTCAGTAGTAATTTTGAAACTTCTGAAGTTTTTTTTTTGTTTTATATGATTTATTAATTCAGTTGAAGTCCAAGAAGGTGGTGGTAATCAATAGAGAAACAAATATATGTGGGAGAATTCTTGAAAATTTGAAACAAAACTAGTTTTTGAGAAACAGATTTGATCACTCTATGGTTATTCTGAAACAGTTTTCTCACCGGTATTGTGGTATAAAAATTAATTTCTTCTTCTTCTGGAACTCCACTCCACGTCCACGTGCCCAGATCATACTGTGACTATGAAACTTCATCTTTAAAAGACCCTAACCCTTGTAGGCATCAGATCTCTCAAGACATTAACCCCTTACTCCTGAAAAAGTGAACATTGCTTTTTCGTCCCATCAATTGTTATTTTTTCCCAACGGACCACTTTGATCTTTACCGAACAACACTTCAAAAAAATAGTGTAATGTGAAGTGGAGTCTGTGGCTCTTTGACATTGAAAAAAAAGATCCCTTTCATTTTTTTTGCTTCCCCAATGCACTTTAAGATATTTTTTCTTTCCGCAGTTTCTTCTCCATCACTAAAGGTCAAACCATTGGAATTTGACAGGACAGAAGATATAAGAGAATGGAAAAATATGAAGATGACTGCGACGTAGAAGAAAAACGGGAACGCAACATTTTCAGGTCGCATGTGAGAGAGGATGAGAGACAAAAGGGAGATAAGGAACGCGCGATTTTATTCTTCACTCCGATGAAACCTTGAACATGTCACTTCATCAATCAAAACCGTTTCTCCGATTCCGTTCGTCCCTCGCCACGCCGTCGCCAAACATACGACACGACCTCAGCAAATTTAATTTGAAAGATGAGATTTTTTTCTTCTCCAAAAGTTCATTTGAAAAAGTGTTGCCAAAGTGTAAAATCGGGAGTGTCATTTGTGA</canonical>
            <polymorphic>AAAATAACAACGCTGGAAAATACTTGCTGACAAGCTAAGTTGTATAAAAATGCATTGCCATTCTTGTTCCACTGATTTCAGTAGTAATTTTGAAACTTCTGAAGTTTTTTTTTTGTTTTATATGATTTATTAATTCAGTTGAAGTCCAAGAAGGTGGTGGTAATCAATAGAGAAACAAATATATGTGGGAGAATTCTTGAAAATTTGAAACAAAACTAGTTTTTGAGAAACAGATTTGATCACTCTATGGTTATTCTGAAACAGTTTTCTCACCGGTATTGTGGTATAAAAATTAATTTCTTCTTCTTCTGGAACTCCACTCCACGTCCACGTGCCCAGATCATACTGTGACTATGAAACTTCATCTTTAAAAGACCCTAACCCTTGTAGGCATCAGATCTCTCAAGACATTAACCCCTTACTCCTGAAAAAGTGAACATTGCTTTTTCGTCCCATCAATTGTTATTTTTTCCCAACGGACCACTTTGATCTTTACCGAWCAACACTTCAAAAAAATAGTGTAATGTGAAGTGGAGTCTGTGGCTCTTTGACATTGAAAAAAAAGATCCCTTTCATTTTTTTTGCTTCCCCAATGCACTTTAAGATATTTTTTCTTTCCGCAGTTTCTTCTCCATCACTAAAGGTCAAACCATTGGAATTTGACAGGACAGAAGATATAAGAGAATGGAAAAATATGAAGATGACTGCGACGTAGAAGAAAAACGGGAACGCAACATTTTCAGGTCGCATGTGAGAGAGGATGAGAGACAAAAGGGAGATAAGGAACGCGCGATTTTATTCTTCACTCCGATGAAACCTTGAACATGTCACTTCATCAATCAAAACCGTTTCTCCGATTCCGTTCGTCCCTCGCCACGCCGTCGCCAAACATACGACACGACCTCAGCAAATTTAATTTGAAAGATGAGATTTTTTTCTTCTCCAAAAGTTCATTTGAAAAAGTGTTGCCAAAGTGTAAAATCGGGAGTGTCATTTGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGATCTCTCAAGACATTAACC</pcr_primer_p1>
		<pcr_primer_p2>CTTTAGTGATGGAGAAGAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAGATCTCTCAAGACATTAACCCCTTACTCCTGAAAAAGTGAACATTGCTTTTTCGTCCCATCAATTGTTATTTTTTCCCAACGGACCACTTTGATCTTTACCGAACAACACTTCAAAAAAATAGTGTAATGTGAAGTGGAGTCTGTGGCTCTTTGACATTGAAAAAAAAGATCCCTTTCATTTTTTTTGCTTCCCCAATGCACTTTAAGATATTTTTTCTTTCCGCAGTTTCTTCTCCATCACTAAAG</canonical_amplicon>
		<polymorphic_amplicon>TCAGATCTCTCAAGACATTAACCCCTTACTCCTGAAAAAGTGAACATTGCTTTTTCGTCCCATCAATTGTTATTTTTTCCCAACGGACCACTTTGATCTTTACCGAWCAACACTTCAAAAAAATAGTGTAATGTGAAGTGGAGTCTGTGGCTCTTTGACATTGAAAAAAAAGATCCCTTTCATTTTTTTTGCTTCCCCAATGCACTTTAAGATATTTTTTCTTTCCGCAGTTTCTTCTCCATCACTAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32168</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>193481</contig_pos>
        <strand>+</strand>
        <context>TAGGAGTAGK[G/T]GAAGCTATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATATTTCAATTGGTGTTTCGATACAGGAAACACAAGCACGTAGGAGTAGG</left_flank>
        <right_flank>GAAGCTATTTATTTGATTATTTTCAGAGAAACACTGAGTGAGTGAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACCAAAAAAGGAAACGATATAAATGAGTGATAAAAACGATTATCTTAAGATGTGTTAAAAGGGAAAAAATGTTTACACCTGCGAGGGTGGAGGGCTAAGGAAAACAATTATAATGGAGAACGTAACGTAAAAAAACTTGCGCAAAAAAAACTGAAATACGAAGAAGATGATGAGATAGGTGAGGTGAACTAACGAAACCTATTTCCCCGATTCGCGGAAAAAACTAAACCTAATGTCACATAAAAAAAGGAAAAGCGAGATAATTCAAAAAACGGAACCCAGCTACCGTATCCAAAGTAGGAGGGAGAGTGAGAGGAAGTGTGACGATTTTTTTGAAATTTTTTGAAATTTTAATTGGGAAATCTTCTGGAAACTTCATGAGTAAGCACATTTTTTTTGCTTGAAAAGAAATTGTTAATTACGATTTTCCGGTGAGATGATGACACGGATATTTCAATTGGTGTTTCGATACAGGAAACACAAGCACGTAGGAGTAGGAGAAGCTATTTATTTGATTATTTTCAGAGAAACACTGAGTGAGTGAAAAAATATATTTTGTTGTGAAAAAACTGAAGAGCAACCAATTAAAAAGAGTGAGAAACCAAACCACGGACAAAAAAATTTTCTTCAGTTTCCGACTTTTTTCCTTTGAAAACAAAGAGAAATTCTTTTCACTTCAGAAACAAGGATTATTGGAAGGGTGCCAAATAACGACCGGGGTTTTTTGGTGGTGGAGCCCATCGAAATGGGTTTGTTGTAATGCTTGGTGGCTTATGTCCACAAATGACATTCAACCTTTGCCACTAGACTCTAGAAGAAAAAAAACCAAAAAAAAGAAAATCAGAAATCGTCCTCAACAATATGGAATGGACAATTGAGTAAATTGAGAATTCAGTTGCTGGTAATACTGTCGAATGCCGTTCTAAGATTAAGTGTCTTCTGTCGTGGACCGTTGTTTCAAAGTCTATAAAATGAGACAATCGAAGGCCATCGACATCT</canonical>
            <polymorphic>GACCAAAAAAGGAAACGATATAAATGAGTGATAAAAACGATTATCTTAAGATGTGTTAAAAGGGAAAAAATGTTTACACCTGCGAGGGTGGAGGGCTAAGGAAAACAATTATAATGGAGAACGTAACGTAAAAAAACTTGCGCAAAAAAAACTGAAATACGAAGAAGATGATGAGATAGGTGAGGTGAACTAACGAAACCTATTTCCCCGATTCGCGGAAAAAACTAAACCTAATGTCACATAAAAAAAGGAAAAGCGAGATAATTCAAAAAACGGAACCCAGCTACCGTATCCAAAGTAGGAGGGAGAGTGAGAGGAAGTGTGACGATTTTTTTGAAATTTTTTGAAATTTTAATTGGGAAATCTTCTGGAAACTTCATGAGTAAGCACATTTTTTTTGCTTGAAAAGAAATTGTTAATTACGATTTTCCGGTGAGATGATGACACGGATATTTCAATTGGTGTTTCGATACAGGAAACACAAGCACGTAGGAGTAGGKGAAGCTATTTATTTGATTATTTTCAGAGAAACACTGAGTGAGTGAAAAAATATATTTTGTTGTGAAAAAACTGAAGAGCAACCAATTAAAAAGAGTGAGAAACCAAACCACGGACAAAAAAATTTTCTTCAGTTTCCGACTTTTTTCCTTTGAAAACAAAGAGAAATTCTTTTCACTTCAGAAACAAGGATTATTGGAAGGGTGCCAAATAACGACCGGGGTTTTTTGGTGGTGGAGCCCATCGAAATGGGTTTGTTGTAATGCTTGGTGGCTTATGTCCACAAATGACATTCAACCTTTGCCACTAGACTCTAGAAGAAAAAAAACCAAAAAAAAGAAAATCAGAAATCGTCCTCAACAATATGGAATGGACAATTGAGTAAATTGAGAATTCAGTTGCTGGTAATACTGTCGAATGCCGTTCTAAGATTAAGTGTCTTCTGTCGTGGACCGTTGTTTCAAAGTCTATAAAATGAGACAATCGAAGGCCATCGACATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTTAATTGGGAAATCTTCT</pcr_primer_p1>
		<pcr_primer_p2>ACTCTTTTTAATTGGTTGCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTTTAATTGGGAAATCTTCTGGAAACTTCATGAGTAAGCACATTTTTTTTGCTTGAAAAGAAATTGTTAATTACGATTTTCCGGTGAGATGATGACACGGATATTTCAATTGGTGTTTCGATACAGGAAACACAAGCACGTAGGAGTAGGAGAAGCTATTTATTTGATTATTTTCAGAGAAACACTGAGTGAGTGAAAAAATATATTTTGTTGTGAAAAAACTGAAGAGCAACCAATTAAAAAGAGT</canonical_amplicon>
		<polymorphic_amplicon>AAATTTTAATTGGGAAATCTTCTGGAAACTTCATGAGTAAGCACATTTTTTTTGCTTGAAAAGAAATTGTTAATTACGATTTTCCGGTGAGATGATGACACGGATATTTCAATTGGTGTTTCGATACAGGAAACACAAGCACGTAGGAGTAGGKGAAGCTATTTATTTGATTATTTTCAGAGAAACACTGAGTGAGTGAAAAAATATATTTTGTTGTGAAAAAACTGAAGAGCAACCAATTAAAAAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32169</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>193800</contig_pos>
        <strand>+</strand>
        <context>ACTCTAGAAG[A/G]AAAAAAACCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGCTTATGTCCACAAATGACATTCAACCTTTGCCACTAGACTCTAGAAG</left_flank>
        <right_flank>AAAAAAACCAAAAAAAAGAAAATCAGAAATCGTCCTCAACAATATGGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTGACGATTTTTTTGAAATTTTTTGAAATTTTAATTGGGAAATCTTCTGGAAACTTCATGAGTAAGCACATTTTTTTTGCTTGAAAAGAAATTGTTAATTACGATTTTCCGGTGAGATGATGACACGGATATTTCAATTGGTGTTTCGATACAGGAAACACAAGCACGTAGGAGTAGGAGAAGCTATTTATTTGATTATTTTCAGAGAAACACTGAGTGAGTGAAAAAATATATTTTGTTGTGAAAAAACTGAAGAGCAACCAATTAAAAAGAGTGAGAAACCAAACCACGGACAAAAAAATTTTCTTCAGTTTCCGACTTTTTTCCTTTGAAAACAAAGAGAAATTCTTTTCACTTCAGAAACAAGGATTATTGGAAGGGTGCCAAATAACGACCGGGGTTTTTTGGTGGTGGAGCCCATCGAAATGGGTTTGTTGTAATGCTTGGTGGCTTATGTCCACAAATGACATTCAACCTTTGCCACTAGACTCTAGAAGAAAAAAAACCAAAAAAAAGAAAATCAGAAATCGTCCTCAACAATATGGAATGGACAATTGAGTAAATTGAGAATTCAGTTGCTGGTAATACTGTCGAATGCCGTTCTAAGATTAAGTGTCTTCTGTCGTGGACCGTTGTTTCAAAGTCTATAAAATGAGACAATCGAAGGCCATCGACATCTGCGGAAAAGAGCTTGCGCTCATTTTTCTTCAACAGTAGCAGCAGCAGCAGTCGCCCCCTATCCCCTCCTGTCGCAAAAACCATCGTTATTTTGTACCCAAGGACGACATTTTGAACGGTTTTGCCCTTCGATTGCAATTTTTCATGAAGGCGTCTCGTTTTTTCGCGGCCAACCTATTTCGAATTGAGACGATGAGACCCGATTTTCGGAAGAAAGAAAAAAAACGAGGGCGCATTTAGAAAGTTGGTTTTTTTATTGTTCACTTCCATTTGACCTAATCTAAATAAAAACCTCTTTCTCTCTCTCTCTCTCTATATCT</canonical>
            <polymorphic>GTGTGACGATTTTTTTGAAATTTTTTGAAATTTTAATTGGGAAATCTTCTGGAAACTTCATGAGTAAGCACATTTTTTTTGCTTGAAAAGAAATTGTTAATTACGATTTTCCGGTGAGATGATGACACGGATATTTCAATTGGTGTTTCGATACAGGAAACACAAGCACGTAGGAGTAGGAGAAGCTATTTATTTGATTATTTTCAGAGAAACACTGAGTGAGTGAAAAAATATATTTTGTTGTGAAAAAACTGAAGAGCAACCAATTAAAAAGAGTGAGAAACCAAACCACGGACAAAAAAATTTTCTTCAGTTTCCGACTTTTTTCCTTTGAAAACAAAGAGAAATTCTTTTCACTTCAGAAACAAGGATTATTGGAAGGGTGCCAAATAACGACCGGGGTTTTTTGGTGGTGGAGCCCATCGAAATGGGTTTGTTGTAATGCTTGGTGGCTTATGTCCACAAATGACATTCAACCTTTGCCACTAGACTCTAGAAGRAAAAAAACCAAAAAAAAGAAAATCAGAAATCGTCCTCAACAATATGGAATGGACAATTGAGTAAATTGAGAATTCAGTTGCTGGTAATACTGTCGAATGCCGTTCTAAGATTAAGTGTCTTCTGTCGTGGACCGTTGTTTCAAAGTCTATAAAATGAGACAATCGAAGGCCATCGACATCTGCGGAAAAGAGCTTGCGCTCATTTTTCTTCAACAGTAGCAGCAGCAGCAGTCGCCCCCTATCCCCTCCTGTCGCAAAAACCATCGTTATTTTGTACCCAAGGACGACATTTTGAACGGTTTTGCCCTTCGATTGCAATTTTTCATGAAGGCGTCTCGTTTTTTCGCGGCCAACCTATTTCGAATTGAGACGATGAGACCCGATTTTCGGAAGAAAGAAAAAAAACGAGGGCGCATTTAGAAAGTTGGTTTTTTTATTGTTCACTTCCATTTGACCTAATCTAAATAAAAACCTCTTTCTCTCTCTCTCTCTCTATATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCTTTTCACTTCAGAAACA</pcr_primer_p1>
		<pcr_primer_p2>GACAGTATTACCAGCAACTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTCTTTTCACTTCAGAAACAAGGATTATTGGAAGGGTGCCAAATAACGACCGGGGTTTTTTGGTGGTGGAGCCCATCGAAATGGGTTTGTTGTAATGCTTGGTGGCTTATGTCCACAAATGACATTCAACCTTTGCCACTAGACTCTAGAAGAAAAAAAACCAAAAAAAAGAAAATCAGAAATCGTCCTCAACAATATGGAATGGACAATTGAGTAAATTGAGAATTCAGTTGCTGGTAATACTGTC</canonical_amplicon>
		<polymorphic_amplicon>AAATTCTTTTCACTTCAGAAACAAGGATTATTGGAAGGGTGCCAAATAACGACCGGGGTTTTTTGGTGGTGGAGCCCATCGAAATGGGTTTGTTGTAATGCTTGGTGGCTTATGTCCACAAATGACATTCAACCTTTGCCACTAGACTCTAGAAGRAAAAAAACCAAAAAAAAGAAAATCAGAAATCGTCCTCAACAATATGGAATGGACAATTGAGTAAATTGAGAATTCAGTTGCTGGTAATACTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32170</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>240705</contig_pos>
        <strand></strand>
        <context>aaatttttcg[A/C]aatgaaaatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTATCGATTTATCGTCTCGATTTTCGTGCGTATTCAGTTAAATTTTTCG</left_flank>
        <right_flank>AATGAAAATTCTCATTTTTAGATTCTTTCAAATGGGAAGGTAACAAAAAA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACAAAAGTTGACTAAGTTCACTTATTTTTAGTTGAAAATGCCGAAATTCGGATTTTCAAAAAATGCAGTTGATTTTGTTGGATGAAGCAGAACATTTTGAGATCTATCAAACATAAATATAGCTTTTTTTAATTGTTGACAATTTTTCGTAAAAATTAATCAAATTGGATAAACCATTTGAAAGTGTCAAGATTCTGAATCCATTGCTATTTCTTGGAGTATTAGAACTTGGATCGTTTCGAACGGCATATCTGATTTAGATGCAAGTAAGTGAAAATTATGTGAAGTTTTTTCAGAATAAAAAAAGAAAAGCAGAACTGATGAAGTTCTAACCAATAATATATATATATATATATATATATATATATATATATATATATATATATGACATGTCTCCAAGCTATCAAATTGAACTAAAGTAACTCGGTTCCCTTAAGAGTCTCTTACAAGTATCGATTTATCGTCTCGATTTTCGTGCGTATTCAGTTAAATTTTTCGAAATGAAAATTCTCATTTTTAGATTCTTTCAAATGGGAAGGTAACAAAAAACTTCACGGAAATCATAAAAAACAAAAAAATAGACGCGGAAAGCCAAAACTCTTTCACATCTCCGATTTTTGAAACAGAGTAATAGTTGATAATTGATTGCATCCACAAAACTACTCTTAACTAATTAAAAGCAATTTTAGCGAATAAACATTACGTACTAATGGAATATTCTTCAATGAGTTCATGCTAACAAAAATGAAACTCTTACTGTATTTAATAATTTTTGAATCTTTAAAAAATTTAAACACTTACTGACTGGATCCGAGAATTCAAAGCTTGATCTTGAGCAAATCCCAAGTGAATAATATTTGGGGTACATCTTTTTAATTTCTTGATAGTGAAGAAAAAAGAAAATATTCGAAAAACCTTGACGCTAAGACGTTTTTCACTTGTTTTCGCCTATCGGATCACACAATCTTGACGGATTAGTTTTTGAATATTTTTCCTCGC</canonical>
            <polymorphic>TACAAAAGTTGACTAAGTTCACTTATTTTTAGTTGAAAATGCCGAAATTCGGATTTTCAAAAAATGCAGTTGATTTTGTTGGATGAAGCAGAACATTTTGAGATCTATCAAACATAAATATAGCTTTTTTTAATTGTTGACAATTTTTCGTAAAAATTAATCAAATTGGATAAACCATTTGAAAGTGTCAAGATTCTGAATCCATTGCTATTTCTTGGAGTATTAGAACTTGGATCGTTTCGAACGGCATATCTGATTTAGATGCAAGTAAGTGAAAATTATGTGAAGTTTTTTCAGAATAAAAAAAGAAAAGCAGAACTGATGAAGTTCTAACCAATAATATATATATATATATATATATATATATATATATATATATATATATATGACATGTCTCCAAGCTATCAAATTGAACTAAAGTAACTCGGTTCCCTTAAGAGTCTCTTACAAGTATCGATTTATCGTCTCGATTTTCGTGCGTATTCAGTTAAATTTTTCGMAATGAAAATTCTCATTTTTAGATTCTTTCAAATGGGAAGGTAACAAAAAACTTCACGGAAATCATAAAAAACAAAAAAATAGACGCGGAAAGCCAAAACTCTTTCACATCTCCGATTTTTGAAACAGAGTAATAGTTGATAATTGATTGCATCCACAAAACTACTCTTAACTAATTAAAAGCAATTTTAGCGAATAAACATTACGTACTAATGGAATATTCTTCAATGAGTTCATGCTAACAAAAATGAAACTCTTACTGTATTTAATAATTTTTGAATCTTTAAAAAATTTAAACACTTACTGACTGGATCCGAGAATTCAAAGCTTGATCTTGAGCAAATCCCAAGTGAATAATATTTGGGGTACATCTTTTTAATTTCTTGATAGTGAAGAAAAAAGAAAATATTCGAAAAACCTTGACGCTAAGACGTTTTTCACTTGTTTTCGCCTATCGGATCACACAATCTTGACGGATTAGTTTTTGAATATTTTTCCTCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>411 257 240 92</canonical_bands>
                <polymorphic_bands>668 240 92</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>411 241 214 91 30 13</canonical_bands>
                <polymorphic_bands>441 241 214 91 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCCAAGCTATCAAATTGAACTA</pcr_primer_p1>
		<pcr_primer_p2>TCAACTATTACTCTGTTTCAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTCCAAGCTATCAAATTGAACTAAAGTAACTCGGTTCCCTTAAGAGTCTCTTACAAGTATCGATTTATCGTCTCGATTTTCGTGCGTATTCAGTTAAATTTTTCGAAATGAAAATTCTCATTTTTAGATTCTTTCAAATGGGAAGGTAACAAAAAACTTCACGGAAATCATAAAAAACAAAAAAATAGACGCGGAAAGCCAAAACTCTTTCACATCTCCGATTTTTGAAACAGAGTAATAGTTGA</canonical_amplicon>
		<polymorphic_amplicon>CTCCAAGCTATCAAATTGAACTAAAGTAACTCGGTTCCCTTAAGAGTCTCTTACAAGTATCGATTTATCGTCTCGATTTTCGTGCGTATTCAGTTAAATTTTTCGMAATGAAAATTCTCATTTTTAGATTCTTTCAAATGGGAAGGTAACAAAAAACTTCACGGAAATCATAAAAAACAAAAAAATAGACGCGGAAAGCCAAAACTCTTTCACATCTCCGATTTTTGAAACAGAGTAATAGTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32171</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>241937</contig_pos>
        <strand>+</strand>
        <context>GTTCGATCAA[C/T]TAAATGGGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAGCAAAAACCAAGCACCTGATATTGAACAACAACAAAGTTCGATCAA</left_flank>
        <right_flank>TAAATGGGAAACAAGTATCAAATATATAAAAAAAACAACTAACCGGCTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACAAAAAAGAAGAAAAAGAATGCTTTACGGAATGCAATTTGGCATTTTAGAATACTCCCTTTTTTTGTTTTTTGCCCCCACTACTCTCTGATTAGCTAAATTAACTCTTCTTTGAAATAGATTCTGCAATTTTTTTTTGCTATAAACCTGGAAAATGTCTTTGTGTTAGCATAGGAAGTGTTGGGATAAGCATAATAATGTTCTAGAATTTCTAGACTTTAAAAGGCAGAAAAATGATTTTCTTTTTTAAAAGCCCGCCAAACTTTTTCACCTGGTTCATTAACTGAGAGAATATAAACTTTTGAGCTGAAAACTTCAGCCGTGTTCCAAAAGAATGTAAAAAAGCCATTGCATATAATTTCAGAAGTTATGCTTTCCGATAATGTGTTTTCTTATCCTTTTCCCCACATAACTTGTTCAATTTTTTTTTTCGGTTAAAAGTATCAAAGAAAGCAAAAACCAAGCACCTGATATTGAACAACAACAAAGTTCGATCAACTAAATGGGAAACAAGTATCAAATATATAAAAAAAACAACTAACCGGCTTTGTGGGTACTGAAACGCGACGCCATCGAATTTTCAGTTGTTCCAGCGCGGCACCATTCTGAAAAAAGAGCTTTTTGTTTTGTTTTGGAAAAAGTATACTTTGCTTCGGGCAGAAAGAAGGACATATTGCCATGGTTTCTGTTTTGAAGATAGAATTTTTTTGGAAATGAGAATAGAGAAACCTCTAGAAGCAATGAATGAAAAACCAACACATGAACGAATGAATGAATGAAAGGTATTGATTTCAATAGAGAATTAATTTGAAACCTTGCGACGATTCTAATGAGAATACATCGTTTGAAAATGTTTTTATTTTTCATAAGAAACAAACAAGGTCAAGTAAAACTACTAAAGAACACATTTGTTAAATGCAAAGTGTATTTTAAAACGCTGGACATTCCATGCAATTATCTGATTCTAATTGTTTCAGGGGTTTTATCGTAATGGCATGA</canonical>
            <polymorphic>GACAAAAAAGAAGAAAAAGAATGCTTTACGGAATGCAATTTGGCATTTTAGAATACTCCCTTTTTTTGTTTTTTGCCCCCACTACTCTCTGATTAGCTAAATTAACTCTTCTTTGAAATAGATTCTGCAATTTTTTTTTGCTATAAACCTGGAAAATGTCTTTGTGTTAGCATAGGAAGTGTTGGGATAAGCATAATAATGTTCTAGAATTTCTAGACTTTAAAAGGCAGAAAAATGATTTTCTTTTTTAAAAGCCCGCCAAACTTTTTCACCTGGTTCATTAACTGAGAGAATATAAACTTTTGAGCTGAAAACTTCAGCCGTGTTCCAAAAGAATGTAAAAAAGCCATTGCATATAATTTCAGAAGTTATGCTTTCCGATAATGTGTTTTCTTATCCTTTTCCCCACATAACTTGTTCAATTTTTTTTTTCGGTTAAAAGTATCAAAGAAAGCAAAAACCAAGCACCTGATATTGAACAACAACAAAGTTCGATCAAYTAAATGGGAAACAAGTATCAAATATATAAAAAAAACAACTAACCGGCTTTGTGGGTACTGAAACGCGACGCCATCGAATTTTCAGTTGTTCCAGCGCGGCACCATTCTGAAAAAAGAGCTTTTTGTTTTGTTTTGGAAAAAGTATACTTTGCTTCGGGCAGAAAGAAGGACATATTGCCATGGTTTCTGTTTTGAAGATAGAATTTTTTTGGAAATGAGAATAGAGAAACCTCTAGAAGCAATGAATGAAAAACCAACACATGAACGAATGAATGAATGAAAGGTATTGATTTCAATAGAGAATTAATTTGAAACCTTGCGACGATTCTAATGAGAATACATCGTTTGAAAATGTTTTTATTTTTCATAAGAAACAAACAAGGTCAAGTAAAACTACTAAAGAACACATTTGTTAAATGCAAAGTGTATTTTAAAACGCTGGACATTCCATGCAATTATCTGATTCTAATTGTTTCAGGGGTTTTATCGTAATGGCATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCCTTTTCCCCACATAACT</pcr_primer_p1>
		<pcr_primer_p2>TACTTTTTCCAAAACAAAACAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATCCTTTTCCCCACATAACTTGTTCAATTTTTTTTTTCGGTTAAAAGTATCAAAGAAAGCAAAAACCAAGCACCTGATATTGAACAACAACAAAGTTCGATCAACTAAATGGGAAACAAGTATCAAATATATAAAAAAAACAACTAACCGGCTTTGTGGGTACTGAAACGCGACGCCATCGAATTTTCAGTTGTTCCAGCGCGGCACCATTCTGAAAAAAGAGCTTTTTGTTTTGTTTTGGAAAAAGTA</canonical_amplicon>
		<polymorphic_amplicon>TATCCTTTTCCCCACATAACTTGTTCAATTTTTTTTTTCGGTTAAAAGTATCAAAGAAAGCAAAAACCAAGCACCTGATATTGAACAACAACAAAGTTCGATCAAYTAAATGGGAAACAAGTATCAAATATATAAAAAAAACAACTAACCGGCTTTGTGGGTACTGAAACGCGACGCCATCGAATTTTCAGTTGTTCCAGCGCGGCACCATTCTGAAAAAAGAGCTTTTTGTTTTGTTTTGGAAAAAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32172</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>400057</contig_pos>
        <strand></strand>
        <context>acttttagta[C/T]gtttcagaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAGTGAAAAAAAAGCAATTTTCAAAGATGATTTTCACAACTTTTAGTA</left_flank>
        <right_flank>GTTTCAGAAAATCTATTTTGTTGTGTTTCACGTAGAATTGAATCAAACTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGCGCATGTGACAAAAATGATGAGGTACTTGAAGGCAAATTACTTCCGTAAAACATTGTTATTCTTAAGATGCCCCATGTTTGGCTTCCGTCGGATGCGAATAATGATTCCACCGGAACAACAATTCGCATCATCCACCAATGTCGAGAGGGATAAAAATACTTCGAATAGAAGGGTTCCAACATGTGGAACTCCTTGTTAGGGAAAGTTAAAATTACGACTTGAATAAAATGTTGTGTAATTATGGGTGCTGGTTGGAAACTGGGAACTAATCGAAAAATTTTGAAAAACAAAAAAAAAGGAAATATTTACAAGGTAACCTCAACATCTTGTAAATCCAGACTTTTATGAAAACTTCAGGATACATTAAGAACGCCTTCTAAAAATTTAAGAATCCACTTGCTAGTTTTAGCCGAGCTATATGAGTATCAGTAGCAAAAATCATGCTTTCAGTGAAAAAAAAGCAATTTTCAAAGATGATTTTCACAACTTTTAGTACGTTTCAGAAAATCTATTTTGTTGTGTTTCACGTAGAATTGAATCAAACTTCCTGTTTCACTTAATATCTCGAAATTTTTACAACAGTTTGAATGAATTTAAGTAGAAGTTAAGACTGATATAACTTTACTGAAACTGGCGAGCGACTTCGAAACTTGTCTCACGCCTTTAGATAGTCTCTTCATACCTAATCCTAAAATTTGAAATACATTTCGTTGTTTTGAAAAATTTTCAGCTGATATTCTAGTTTTTACATCAAAAATGACAGTATTCCTCTCTGAGCGAGCTGAGTTTTGCAAAATGTCTTTCAGTTTCTTTTTTTCTGCTTATTTTCGGATTTCAAGTTAAAAAATTTTTAAGTTGAAACTTGGTTTCTCTAAACTTGAAATATAAATGTTTTGAGCTCACACAAAGATTTTTTAAAAAATTTCTCATTTTTATTTTTATCTTCTGATCCCAACAACTCTATTTTTGTGTCATTGTCATTTTTGTACATAATGA</canonical>
            <polymorphic>GGGCGCATGTGACAAAAATGATGAGGTACTTGAAGGCAAATTACTTCCGTAAAACATTGTTATTCTTAAGATGCCCCATGTTTGGCTTCCGTCGGATGCGAATAATGATTCCACCGGAACAACAATTCGCATCATCCACCAATGTCGAGAGGGATAAAAATACTTCGAATAGAAGGGTTCCAACATGTGGAACTCCTTGTTAGGGAAAGTTAAAATTACGACTTGAATAAAATGTTGTGTAATTATGGGTGCTGGTTGGAAACTGGGAACTAATCGAAAAATTTTGAAAAACAAAAAAAAAGGAAATATTTACAAGGTAACCTCAACATCTTGTAAATCCAGACTTTTATGAAAACTTCAGGATACATTAAGAACGCCTTCTAAAAATTTAAGAATCCACTTGCTAGTTTTAGCCGAGCTATATGAGTATCAGTAGCAAAAATCATGCTTTCAGTGAAAAAAAAGCAATTTTCAAAGATGATTTTCACAACTTTTAGTAYGTTTCAGAAAATCTATTTTGTTGTGTTTCACGTAGAATTGAATCAAACTTCCTGTTTCACTTAATATCTCGAAATTTTTACAACAGTTTGAATGAATTTAAGTAGAAGTTAAGACTGATATAACTTTACTGAAACTGGCGAGCGACTTCGAAACTTGTCTCACGCCTTTAGATAGTCTCTTCATACCTAATCCTAAAATTTGAAATACATTTCGTTGTTTTGAAAAATTTTCAGCTGATATTCTAGTTTTTACATCAAAAATGACAGTATTCCTCTCTGAGCGAGCTGAGTTTTGCAAAATGTCTTTCAGTTTCTTTTTTTCTGCTTATTTTCGGATTTCAAGTTAAAAAATTTTTAAGTTGAAACTTGGTTTCTCTAAACTTGAAATATAAATGTTTTGAGCTCACACAAAGATTTTTTAAAAAATTTCTCATTTTTATTTTTATCTTCTGATCCCAACAACTCTATTTTTGTGTCATTGTCATTTTTGTACATAATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>493 471 27 9</canonical_bands>
                <polymorphic_bands>964 27 9</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>499 470 31</canonical_bands>
                <polymorphic_bands>530 470</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAAACTTCAGGATACATTAAGA</pcr_primer_p1>
		<pcr_primer_p2>AATTCATTCAAACTGTTGTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAAAACTTCAGGATACATTAAGAACGCCTTCTAAAAATTTAAGAATCCACTTGCTAGTTTTAGCCGAGCTATATGAGTATCAGTAGCAAAAATCATGCTTTCAGTGAAAAAAAAGCAATTTTCAAAGATGATTTTCACAACTTTTAGTACGTTTCAGAAAATCTATTTTGTTGTGTTTCACGTAGAATTGAATCAAACTTCCTGTTTCACTTAATATCTCGAAATTTTTACAACAGTTTGAATGAATT</canonical_amplicon>
		<polymorphic_amplicon>TGAAAACTTCAGGATACATTAAGAACGCCTTCTAAAAATTTAAGAATCCACTTGCTAGTTTTAGCCGAGCTATATGAGTATCAGTAGCAAAAATCATGCTTTCAGTGAAAAAAAAGCAATTTTCAAAGATGATTTTCACAACTTTTAGTAYGTTTCAGAAAATCTATTTTGTTGTGTTTCACGTAGAATTGAATCAAACTTCCTGTTTCACTTAATATCTCGAAATTTTTACAACAGTTTGAATGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32174</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>456291</contig_pos>
        <strand>-</strand>
        <context>TCCGGAAAAG[C/T]ACCYTACAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAG</left_flank>
        <right_flank>ACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCAATCGGGGTATTTGTAAAGGCAGCAGGATCGGATTTTCTTTGGAAGTGCTGGAGGTTCTTCTCTATAAATGTTCACGATTGACACACTGTTTGGAGCAAGATTATTCCCTAGAATCGTCGTGAAATAACTCAGAAATTGGTATGTGGCTTTTTTTTTGTATAGCAAACACATGTCGAGATTGAAATGAACTTTGCCAAAACTCTTGTATTTCGCACTGTTTTTAATTTTCATTTCGCGACAAAAACTGCTCAAAAATTTATTAATTCCTGCGAAAAGTACAAGTTCACGGTCTCCCACAGAACATATCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAGTTTGGCGCAATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGTTACAAGAATCGAAAAAGGCAACAAAAAATCATTGCGTTTTCCTAGATGAATCGGAAAATGGATCCGAAGATCGCAGGCCTGCCGATGGGATCACCCCGCAAACTACTCAAACGAAACGAAAACTTTTGCAGGCAGCGCGTAGTATTTTGCTGATAGCTTGTAGAATAGCCA</canonical>
            <polymorphic>CCCAATCGGGGTATTTGTAAAGGCAGCAGGATCGGATTTTCTTTGGAAGTGCTGGAGGTTCTTCTCTATAAATGTTCACGATTGACACACTGTTTGGAGCAAGATTATTCCCTAGAATCGTCGTGAAATAACTCAGAAATTGGTATGTGGCTTTTTTTTTGTATAGCAAACACATGTCGAGATTGAAATGAACTTTGCCAAAACTCTTGTATTTCGCACTGTTTTTAATTTTCATTTCGCGACAAAAACTGCTCAAAAATTTATTAATTCCTGCGAAAAGTACAAGTTCACGGTCTCCCACAGAACATATCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAGTTTGGCGCAATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGYACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGTTACAAGAATCGAAAAAGGCAACAAAAAATCATTGCGTTTTCCTAGATGAATCGGAAAATGGATCCGAAGATCGCAGGCCTGCCGATGGGATCACCCCGCAAACTACTCAAACGAAACGAAAACTTTTGCAGGCAGCGCGTAGTATTTTGCTGATAGCTTGTAGAATAGCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGCAGGTCTAAAACCATAAT</pcr_primer_p1>
		<pcr_primer_p2>AGGTCTAAAGCCACATTTACAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCT</canonical_amplicon>
		<polymorphic_amplicon>AATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGYACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32175</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>456295</contig_pos>
        <strand>-</strand>
        <context>GAAAAGYACC[C/T]TACAGGATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACC</left_flank>
        <right_flank>TACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGGGGTATTTGTAAAGGCAGCAGGATCGGATTTTCTTTGGAAGTGCTGGAGGTTCTTCTCTATAAATGTTCACGATTGACACACTGTTTGGAGCAAGATTATTCCCTAGAATCGTCGTGAAATAACTCAGAAATTGGTATGTGGCTTTTTTTTTGTATAGCAAACACATGTCGAGATTGAAATGAACTTTGCCAAAACTCTTGTATTTCGCACTGTTTTTAATTTTCATTTCGCGACAAAAACTGCTCAAAAATTTATTAATTCCTGCGAAAAGTACAAGTTCACGGTCTCCCACAGAACATATCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAGTTTGGCGCAATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGTTACAAGAATCGAAAAAGGCAACAAAAAATCATTGCGTTTTCCTAGATGAATCGGAAAATGGATCCGAAGATCGCAGGCCTGCCGATGGGATCACCCCGCAAACTACTCAAACGAAACGAAAACTTTTGCAGGCAGCGCGTAGTATTTTGCTGATAGCTTGTAGAATAGCCAGAGA</canonical>
            <polymorphic>ATCGGGGTATTTGTAAAGGCAGCAGGATCGGATTTTCTTTGGAAGTGCTGGAGGTTCTTCTCTATAAATGTTCACGATTGACACACTGTTTGGAGCAAGATTATTCCCTAGAATCGTCGTGAAATAACTCAGAAATTGGTATGTGGCTTTTTTTTTGTATAGCAAACACATGTCGAGATTGAAATGAACTTTGCCAAAACTCTTGTATTTCGCACTGTTTTTAATTTTCATTTCGCGACAAAAACTGCTCAAAAATTTATTAATTCCTGCGAAAAGTACAAGTTCACGGTCTCCCACAGAACATATCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAGTTTGGCGCAATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCYTACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGTTACAAGAATCGAAAAAGGCAACAAAAAATCATTGCGTTTTCCTAGATGAATCGGAAAATGGATCCGAAGATCGCAGGCCTGCCGATGGGATCACCCCGCAAACTACTCAAACGAAACGAAAACTTTTGCAGGCAGCGCGTAGTATTTTGCTGATAGCTTGTAGAATAGCCAGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGCAGGTCTAAAACCATAAT</pcr_primer_p1>
		<pcr_primer_p2>AGGTCTAAAGCCACATTTACAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCT</canonical_amplicon>
		<polymorphic_amplicon>AATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCYTACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32176</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>456342</contig_pos>
        <strand>-</strand>
        <context>ATCATTTGAA[A/T]CATRTTYAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAA</left_flank>
        <right_flank>CATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGAGGTTCTTCTCTATAAATGTTCACGATTGACACACTGTTTGGAGCAAGATTATTCCCTAGAATCGTCGTGAAATAACTCAGAAATTGGTATGTGGCTTTTTTTTTGTATAGCAAACACATGTCGAGATTGAAATGAACTTTGCCAAAACTCTTGTATTTCGCACTGTTTTTAATTTTCATTTCGCGACAAAAACTGCTCAAAAATTTATTAATTCCTGCGAAAAGTACAAGTTCACGGTCTCCCACAGAACATATCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAGTTTGGCGCAATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGTTACAAGAATCGAAAAAGGCAACAAAAAATCATTGCGTTTTCCTAGATGAATCGGAAAATGGATCCGAAGATCGCAGGCCTGCCGATGGGATCACCCCGCAAACTACTCAAACGAAACGAAAACTTTTGCAGGCAGCGCGTAGTATTTTGCTGATAGCTTGTAGAATAGCCAGAGAATATCCTTTTTTTAGTTGTTTTTTTTTAGTTTTTGGCGCAATCTGTC</canonical>
            <polymorphic>CTGGAGGTTCTTCTCTATAAATGTTCACGATTGACACACTGTTTGGAGCAAGATTATTCCCTAGAATCGTCGTGAAATAACTCAGAAATTGGTATGTGGCTTTTTTTTTGTATAGCAAACACATGTCGAGATTGAAATGAACTTTGCCAAAACTCTTGTATTTCGCACTGTTTTTAATTTTCATTTCGCGACAAAAACTGCTCAAAAATTTATTAATTCCTGCGAAAAGTACAAGTTCACGGTCTCCCACAGAACATATCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAGTTTGGCGCAATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAWCATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGTTACAAGAATCGAAAAAGGCAACAAAAAATCATTGCGTTTTCCTAGATGAATCGGAAAATGGATCCGAAGATCGCAGGCCTGCCGATGGGATCACCCCGCAAACTACTCAAACGAAACGAAAACTTTTGCAGGCAGCGCGTAGTATTTTGCTGATAGCTTGTAGAATAGCCAGAGAATATCCTTTTTTTAGTTGTTTTTTTTTAGTTTTTGGCGCAATCTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGCAGGTCTAAAACCATAAT</pcr_primer_p1>
		<pcr_primer_p2>AGGTCTAAAGCCACATTTACAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCT</canonical_amplicon>
		<polymorphic_amplicon>AATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAWCATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32177</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>456346</contig_pos>
        <strand>-</strand>
        <context>TTTGAAWCAT[A/G]TTYAATCTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACAT</left_flank>
        <right_flank>TTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGTTCTTCTCTATAAATGTTCACGATTGACACACTGTTTGGAGCAAGATTATTCCCTAGAATCGTCGTGAAATAACTCAGAAATTGGTATGTGGCTTTTTTTTTGTATAGCAAACACATGTCGAGATTGAAATGAACTTTGCCAAAACTCTTGTATTTCGCACTGTTTTTAATTTTCATTTCGCGACAAAAACTGCTCAAAAATTTATTAATTCCTGCGAAAAGTACAAGTTCACGGTCTCCCACAGAACATATCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAGTTTGGCGCAATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGTTACAAGAATCGAAAAAGGCAACAAAAAATCATTGCGTTTTCCTAGATGAATCGGAAAATGGATCCGAAGATCGCAGGCCTGCCGATGGGATCACCCCGCAAACTACTCAAACGAAACGAAAACTTTTGCAGGCAGCGCGTAGTATTTTGCTGATAGCTTGTAGAATAGCCAGAGAATATCCTTTTTTTAGTTGTTTTTTTTTAGTTTTTGGCGCAATCTGTCTGAC</canonical>
            <polymorphic>AGGTTCTTCTCTATAAATGTTCACGATTGACACACTGTTTGGAGCAAGATTATTCCCTAGAATCGTCGTGAAATAACTCAGAAATTGGTATGTGGCTTTTTTTTTGTATAGCAAACACATGTCGAGATTGAAATGAACTTTGCCAAAACTCTTGTATTTCGCACTGTTTTTAATTTTCATTTCGCGACAAAAACTGCTCAAAAATTTATTAATTCCTGCGAAAAGTACAAGTTCACGGTCTCCCACAGAACATATCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAGTTTGGCGCAATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATRTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGTTACAAGAATCGAAAAAGGCAACAAAAAATCATTGCGTTTTCCTAGATGAATCGGAAAATGGATCCGAAGATCGCAGGCCTGCCGATGGGATCACCCCGCAAACTACTCAAACGAAACGAAAACTTTTGCAGGCAGCGCGTAGTATTTTGCTGATAGCTTGTAGAATAGCCAGAGAATATCCTTTTTTTAGTTGTTTTTTTTTAGTTTTTGGCGCAATCTGTCTGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>333 253 167 64 60 56 45 22</canonical_bands>
                <polymorphic_bands>333 253 231 60 56 45 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAGGTCTAAAACCATAATTTC</pcr_primer_p1>
		<pcr_primer_p2>GATCACAATTGCAGGTCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATC</canonical_amplicon>
		<polymorphic_amplicon>GCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATRTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32178</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>456349</contig_pos>
        <strand>-</strand>
        <context>GAAWCATRTT[C/T]AATCTCCACA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTT</left_flank>
        <right_flank>AATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTCTCTATAAATGTTCACGATTGACACACTGTTTGGAGCAAGATTATTCCCTAGAATCGTCGTGAAATAACTCAGAAATTGGTATGTGGCTTTTTTTTTGTATAGCAAACACATGTCGAGATTGAAATGAACTTTGCCAAAACTCTTGTATTTCGCACTGTTTTTAATTTTCATTTCGCGACAAAAACTGCTCAAAAATTTATTAATTCCTGCGAAAAGTACAAGTTCACGGTCTCCCACAGAACATATCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAGTTTGGCGCAATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGTTACAAGAATCGAAAAAGGCAACAAAAAATCATTGCGTTTTCCTAGATGAATCGGAAAATGGATCCGAAGATCGCAGGCCTGCCGATGGGATCACCCCGCAAACTACTCAAACGAAACGAAAACTTTTGCAGGCAGCGCGTAGTATTTTGCTGATAGCTTGTAGAATAGCCAGAGAATATCCTTTTTTTAGTTGTTTTTTTTTAGTTTTTGGCGCAATCTGTCTGACATC</canonical>
            <polymorphic>TTCTTCTCTATAAATGTTCACGATTGACACACTGTTTGGAGCAAGATTATTCCCTAGAATCGTCGTGAAATAACTCAGAAATTGGTATGTGGCTTTTTTTTTGTATAGCAAACACATGTCGAGATTGAAATGAACTTTGCCAAAACTCTTGTATTTCGCACTGTTTTTAATTTTCATTTCGCGACAAAAACTGCTCAAAAATTTATTAATTCCTGCGAAAAGTACAAGTTCACGGTCTCCCACAGAACATATCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAGTTTGGCGCAATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTYAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGTTACAAGAATCGAAAAAGGCAACAAAAAATCATTGCGTTTTCCTAGATGAATCGGAAAATGGATCCGAAGATCGCAGGCCTGCCGATGGGATCACCCCGCAAACTACTCAAACGAAACGAAAACTTTTGCAGGCAGCGCGTAGTATTTTGCTGATAGCTTGTAGAATAGCCAGAGAATATCCTTTTTTTAGTTGTTTTTTTTTAGTTTTTGGCGCAATCTGTCTGACATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>308 277 181 78 57 42 29 19 9</canonical_bands>
                <polymorphic_bands>308 296 181 78 57 42 29 9</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>336 253 167 64 60 56 45 19</canonical_bands>
                <polymorphic_bands>336 253 231 60 56 45 19</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>308 277 181 78 57 42 29 19 9</canonical_bands>
                <polymorphic_bands>308 296 181 78 57 42 29 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAGGTCTAAAACCATAATTTC</pcr_primer_p1>
		<pcr_primer_p2>GATCACAATTGCAGGTCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATC</canonical_amplicon>
		<polymorphic_amplicon>GCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTYAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32179</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>456363</contig_pos>
        <strand>-</strand>
        <context>CTCCACAAAA[A/G]CAGATAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAA</left_flank>
        <right_flank>CAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTCACGATTGACACACTGTTTGGAGCAAGATTATTCCCTAGAATCGTCGTGAAATAACTCAGAAATTGGTATGTGGCTTTTTTTTTGTATAGCAAACACATGTCGAGATTGAAATGAACTTTGCCAAAACTCTTGTATTTCGCACTGTTTTTAATTTTCATTTCGCGACAAAAACTGCTCAAAAATTTATTAATTCCTGCGAAAAGTACAAGTTCACGGTCTCCCACAGAACATATCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAGTTTGGCGCAATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGTTACAAGAATCGAAAAAGGCAACAAAAAATCATTGCGTTTTCCTAGATGAATCGGAAAATGGATCCGAAGATCGCAGGCCTGCCGATGGGATCACCCCGCAAACTACTCAAACGAAACGAAAACTTTTGCAGGCAGCGCGTAGTATTTTGCTGATAGCTTGTAGAATAGCCAGAGAATATCCTTTTTTTAGTTGTTTTTTTTTAGTTTTTGGCGCAATCTGTCTGACATCGTTTCTCCCAAAAA</canonical>
            <polymorphic>TGTTCACGATTGACACACTGTTTGGAGCAAGATTATTCCCTAGAATCGTCGTGAAATAACTCAGAAATTGGTATGTGGCTTTTTTTTTGTATAGCAAACACATGTCGAGATTGAAATGAACTTTGCCAAAACTCTTGTATTTCGCACTGTTTTTAATTTTCATTTCGCGACAAAAACTGCTCAAAAATTTATTAATTCCTGCGAAAAGTACAAGTTCACGGTCTCCCACAGAACATATCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAGTTTGGCGCAATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAARCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGTTACAAGAATCGAAAAAGGCAACAAAAAATCATTGCGTTTTCCTAGATGAATCGGAAAATGGATCCGAAGATCGCAGGCCTGCCGATGGGATCACCCCGCAAACTACTCAAACGAAACGAAAACTTTTGCAGGCAGCGCGTAGTATTTTGCTGATAGCTTGTAGAATAGCCAGAGAATATCCTTTTTTTAGTTGTTTTTTTTTAGTTTTTGGCGCAATCTGTCTGACATCGTTTCTCCCAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGGAGATTGAAAATGATTC</pcr_primer_p1>
		<pcr_primer_p2>CACAATTATACCTAACACGGTCT</pcr_primer_p2>
		<pcr_amplicon_size>296</pcr_amplicon_size>
		<canonical_amplicon>TGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTG</canonical_amplicon>
		<polymorphic_amplicon>TGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAARCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32180</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>456412</contig_pos>
        <strand>-</strand>
        <context>ATTGTGATCG[C/G]GCCAAYTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCG</left_flank>
        <right_flank>GCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTGAAATAACTCAGAAATTGGTATGTGGCTTTTTTTTTGTATAGCAAACACATGTCGAGATTGAAATGAACTTTGCCAAAACTCTTGTATTTCGCACTGTTTTTAATTTTCATTTCGCGACAAAAACTGCTCAAAAATTTATTAATTCCTGCGAAAAGTACAAGTTCACGGTCTCCCACAGAACATATCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAGTTTGGCGCAATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGTTACAAGAATCGAAAAAGGCAACAAAAAATCATTGCGTTTTCCTAGATGAATCGGAAAATGGATCCGAAGATCGCAGGCCTGCCGATGGGATCACCCCGCAAACTACTCAAACGAAACGAAAACTTTTGCAGGCAGCGCGTAGTATTTTGCTGATAGCTTGTAGAATAGCCAGAGAATATCCTTTTTTTAGTTGTTTTTTTTTAGTTTTTGGCGCAATCTGTCTGACATCGTTTCTCCCAAAAAATTTTCATTGTTGAATCTTTTCGAATCAATTTTTGATCTCAAAATCACT</canonical>
            <polymorphic>CGTGAAATAACTCAGAAATTGGTATGTGGCTTTTTTTTTGTATAGCAAACACATGTCGAGATTGAAATGAACTTTGCCAAAACTCTTGTATTTCGCACTGTTTTTAATTTTCATTTCGCGACAAAAACTGCTCAAAAATTTATTAATTCCTGCGAAAAGTACAAGTTCACGGTCTCCCACAGAACATATCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAGTTTGGCGCAATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGSGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGTTACAAGAATCGAAAAAGGCAACAAAAAATCATTGCGTTTTCCTAGATGAATCGGAAAATGGATCCGAAGATCGCAGGCCTGCCGATGGGATCACCCCGCAAACTACTCAAACGAAACGAAAACTTTTGCAGGCAGCGCGTAGTATTTTGCTGATAGCTTGTAGAATAGCCAGAGAATATCCTTTTTTTAGTTGTTTTTTTTTAGTTTTTGGCGCAATCTGTCTGACATCGTTTCTCCCAAAAAATTTTCATTGTTGAATCTTTTCGAATCAATTTTTGATCTCAAAATCACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>499 409 92</canonical_bands>
                <polymorphic_bands>591 409</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 215 151 92 41</canonical_bands>
                <polymorphic_bands>593 215 151 41</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>447 124 97 84 79 54 29 25 22 19 12 8</canonical_bands>
                <polymorphic_bands>447 124 109 97 79 54 29 22 19 12 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGGAGATTGAAAATGATTC</pcr_primer_p1>
		<pcr_primer_p2>CACAATTATACCTAACACGGTCT</pcr_primer_p2>
		<pcr_amplicon_size>296</pcr_amplicon_size>
		<canonical_amplicon>TGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTG</canonical_amplicon>
		<polymorphic_amplicon>TGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGSGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32181</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>456418</contig_pos>
        <strand>-</strand>
        <context>ATCGSGCCAA[C/T]TTTTTTATCT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAA</left_flank>
        <right_flank>TTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAACTCAGAAATTGGTATGTGGCTTTTTTTTTGTATAGCAAACACATGTCGAGATTGAAATGAACTTTGCCAAAACTCTTGTATTTCGCACTGTTTTTAATTTTCATTTCGCGACAAAAACTGCTCAAAAATTTATTAATTCCTGCGAAAAGTACAAGTTCACGGTCTCCCACAGAACATATCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAGTTTGGCGCAATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGTTACAAGAATCGAAAAAGGCAACAAAAAATCATTGCGTTTTCCTAGATGAATCGGAAAATGGATCCGAAGATCGCAGGCCTGCCGATGGGATCACCCCGCAAACTACTCAAACGAAACGAAAACTTTTGCAGGCAGCGCGTAGTATTTTGCTGATAGCTTGTAGAATAGCCAGAGAATATCCTTTTTTTAGTTGTTTTTTTTTAGTTTTTGGCGCAATCTGTCTGACATCGTTTCTCCCAAAAAATTTTCATTGTTGAATCTTTTCGAATCAATTTTTGATCTCAAAATCACTCTTAAT</canonical>
            <polymorphic>ATAACTCAGAAATTGGTATGTGGCTTTTTTTTTGTATAGCAAACACATGTCGAGATTGAAATGAACTTTGCCAAAACTCTTGTATTTCGCACTGTTTTTAATTTTCATTTCGCGACAAAAACTGCTCAAAAATTTATTAATTCCTGCGAAAAGTACAAGTTCACGGTCTCCCACAGAACATATCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAGTTTGGCGCAATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAYTTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGTTACAAGAATCGAAAAAGGCAACAAAAAATCATTGCGTTTTCCTAGATGAATCGGAAAATGGATCCGAAGATCGCAGGCCTGCCGATGGGATCACCCCGCAAACTACTCAAACGAAACGAAAACTTTTGCAGGCAGCGCGTAGTATTTTGCTGATAGCTTGTAGAATAGCCAGAGAATATCCTTTTTTTAGTTGTTTTTTTTTAGTTTTTGGCGCAATCTGTCTGACATCGTTTCTCCCAAAAAATTTTCATTGTTGAATCTTTTCGAATCAATTTTTGATCTCAAAATCACTCTTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>270 146 132 132 130 90 56 44</canonical_bands>
                <polymorphic_bands>270 190 132 132 130 90 56</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>270 89 81 62 55 53 45 44 37 31 28 28 27 26 20 17 16 15 10 9 8 8 7 6 4 4</canonical_bands>
                <polymorphic_bands>270 89 81 62 55 53 45 44 43 37 31 28 28 26 20 17 15 10 9 8 8 7 6 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGGAGATTGAAAATGATTC</pcr_primer_p1>
		<pcr_primer_p2>CACAATTATACCTAACACGGTCT</pcr_primer_p2>
		<pcr_amplicon_size>296</pcr_amplicon_size>
		<canonical_amplicon>TGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTG</canonical_amplicon>
		<polymorphic_amplicon>TGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAYTTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32182</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>456437</contig_pos>
        <strand>-</strand>
        <context>CTGTAGATCA[G/T]AAATAAAWTT</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCA</left_flank>
        <right_flank>AAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGGCTTTTTTTTTGTATAGCAAACACATGTCGAGATTGAAATGAACTTTGCCAAAACTCTTGTATTTCGCACTGTTTTTAATTTTCATTTCGCGACAAAAACTGCTCAAAAATTTATTAATTCCTGCGAAAAGTACAAGTTCACGGTCTCCCACAGAACATATCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAGTTTGGCGCAATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGTTACAAGAATCGAAAAAGGCAACAAAAAATCATTGCGTTTTCCTAGATGAATCGGAAAATGGATCCGAAGATCGCAGGCCTGCCGATGGGATCACCCCGCAAACTACTCAAACGAAACGAAAACTTTTGCAGGCAGCGCGTAGTATTTTGCTGATAGCTTGTAGAATAGCCAGAGAATATCCTTTTTTTAGTTGTTTTTTTTTAGTTTTTGGCGCAATCTGTCTGACATCGTTTCTCCCAAAAAATTTTCATTGTTGAATCTTTTCGAATCAATTTTTGATCTCAAAATCACTCTTAATACTCACCTTGATCACCACT</canonical>
            <polymorphic>GTGGCTTTTTTTTTGTATAGCAAACACATGTCGAGATTGAAATGAACTTTGCCAAAACTCTTGTATTTCGCACTGTTTTTAATTTTCATTTCGCGACAAAAACTGCTCAAAAATTTATTAATTCCTGCGAAAAGTACAAGTTCACGGTCTCCCACAGAACATATCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAGTTTGGCGCAATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCAKAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGTTACAAGAATCGAAAAAGGCAACAAAAAATCATTGCGTTTTCCTAGATGAATCGGAAAATGGATCCGAAGATCGCAGGCCTGCCGATGGGATCACCCCGCAAACTACTCAAACGAAACGAAAACTTTTGCAGGCAGCGCGTAGTATTTTGCTGATAGCTTGTAGAATAGCCAGAGAATATCCTTTTTTTAGTTGTTTTTTTTTAGTTTTTGGCGCAATCTGTCTGACATCGTTTCTCCCAAAAAATTTTCATTGTTGAATCTTTTCGAATCAATTTTTGATCTCAAAATCACTCTTAATACTCACCTTGATCACCACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>220 197 156 72 60 50 46 42 30 29 23 20 15 13 10 9 3 3 2</canonical_bands>
                <polymorphic_bands>220 197 156 72 71 60 50 46 30 23 20 15 13 10 9 3 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTAAATGTGGCTTTAGACCT</pcr_primer_p1>
		<pcr_primer_p2>ACAACTACTATGAAGCGAAGCTA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGT</canonical_amplicon>
		<polymorphic_amplicon>CTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCAKAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32183</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>456445</contig_pos>
        <strand>-</strand>
        <context>CAKAAATAAA[A/T]TTGSAGTTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAA</left_flank>
        <right_flank>TTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTGTATAGCAAACACATGTCGAGATTGAAATGAACTTTGCCAAAACTCTTGTATTTCGCACTGTTTTTAATTTTCATTTCGCGACAAAAACTGCTCAAAAATTTATTAATTCCTGCGAAAAGTACAAGTTCACGGTCTCCCACAGAACATATCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAGTTTGGCGCAATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGTTACAAGAATCGAAAAAGGCAACAAAAAATCATTGCGTTTTCCTAGATGAATCGGAAAATGGATCCGAAGATCGCAGGCCTGCCGATGGGATCACCCCGCAAACTACTCAAACGAAACGAAAACTTTTGCAGGCAGCGCGTAGTATTTTGCTGATAGCTTGTAGAATAGCCAGAGAATATCCTTTTTTTAGTTGTTTTTTTTTAGTTTTTGGCGCAATCTGTCTGACATCGTTTCTCCCAAAAAATTTTCATTGTTGAATCTTTTCGAATCAATTTTTGATCTCAAAATCACTCTTAATACTCACCTTGATCACCACTTCTTTTTT</canonical>
            <polymorphic>TTTTTTGTATAGCAAACACATGTCGAGATTGAAATGAACTTTGCCAAAACTCTTGTATTTCGCACTGTTTTTAATTTTCATTTCGCGACAAAAACTGCTCAAAAATTTATTAATTCCTGCGAAAAGTACAAGTTCACGGTCTCCCACAGAACATATCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAGTTTGGCGCAATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAWTTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGTTACAAGAATCGAAAAAGGCAACAAAAAATCATTGCGTTTTCCTAGATGAATCGGAAAATGGATCCGAAGATCGCAGGCCTGCCGATGGGATCACCCCGCAAACTACTCAAACGAAACGAAAACTTTTGCAGGCAGCGCGTAGTATTTTGCTGATAGCTTGTAGAATAGCCAGAGAATATCCTTTTTTTAGTTGTTTTTTTTTAGTTTTTGGCGCAATCTGTCTGACATCGTTTCTCCCAAAAAATTTTCATTGTTGAATCTTTTCGAATCAATTTTTGATCTCAAAATCACTCTTAATACTCACCTTGATCACCACTTCTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>270 81 72 62 55 55 53 45 44 37 31 28 27 26 20 17 16 15 9 8 8 7 6 4 4</canonical_bands>
                <polymorphic_bands>270 81 72 62 55 55 53 45 44 44 37 31 28 26 20 16 15 9 8 8 7 6 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTAAATGTGGCTTTAGACCT</pcr_primer_p1>
		<pcr_primer_p2>ACAACTACTATGAAGCGAAGCTA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGT</canonical_amplicon>
		<polymorphic_amplicon>CTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAWTTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32184</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>456449</contig_pos>
        <strand>-</strand>
        <context>AATAAAWTTG[C/G]AGTTCGTAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTG</left_flank>
        <right_flank>AGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTATAGCAAACACATGTCGAGATTGAAATGAACTTTGCCAAAACTCTTGTATTTCGCACTGTTTTTAATTTTCATTTCGCGACAAAAACTGCTCAAAAATTTATTAATTCCTGCGAAAAGTACAAGTTCACGGTCTCCCACAGAACATATCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAGTTTGGCGCAATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGTTACAAGAATCGAAAAAGGCAACAAAAAATCATTGCGTTTTCCTAGATGAATCGGAAAATGGATCCGAAGATCGCAGGCCTGCCGATGGGATCACCCCGCAAACTACTCAAACGAAACGAAAACTTTTGCAGGCAGCGCGTAGTATTTTGCTGATAGCTTGTAGAATAGCCAGAGAATATCCTTTTTTTAGTTGTTTTTTTTTAGTTTTTGGCGCAATCTGTCTGACATCGTTTCTCCCAAAAAATTTTCATTGTTGAATCTTTTCGAATCAATTTTTGATCTCAAAATCACTCTTAATACTCACCTTGATCACCACTTCTTTTTTATCA</canonical>
            <polymorphic>TTGTATAGCAAACACATGTCGAGATTGAAATGAACTTTGCCAAAACTCTTGTATTTCGCACTGTTTTTAATTTTCATTTCGCGACAAAAACTGCTCAAAAATTTATTAATTCCTGCGAAAAGTACAAGTTCACGGTCTCCCACAGAACATATCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAGTTTGGCGCAATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGSAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGTTACAAGAATCGAAAAAGGCAACAAAAAATCATTGCGTTTTCCTAGATGAATCGGAAAATGGATCCGAAGATCGCAGGCCTGCCGATGGGATCACCCCGCAAACTACTCAAACGAAACGAAAACTTTTGCAGGCAGCGCGTAGTATTTTGCTGATAGCTTGTAGAATAGCCAGAGAATATCCTTTTTTTAGTTGTTTTTTTTTAGTTTTTGGCGCAATCTGTCTGACATCGTTTCTCCCAAAAAATTTTCATTGTTGAATCTTTTCGAATCAATTTTTGATCTCAAAATCACTCTTAATACTCACCTTGATCACCACTTCTTTTTTATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTAAATGTGGCTTTAGACCT</pcr_primer_p1>
		<pcr_primer_p2>ACAACTACTATGAAGCGAAGCTA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGT</canonical_amplicon>
		<polymorphic_amplicon>CTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGSAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32185</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>456464</contig_pos>
        <strand>-</strand>
        <context>CGTAACAAAT[A/G]TGRYGGAGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAAT</left_flank>
        <right_flank>TGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTCGAGATTGAAATGAACTTTGCCAAAACTCTTGTATTTCGCACTGTTTTTAATTTTCATTTCGCGACAAAAACTGCTCAAAAATTTATTAATTCCTGCGAAAAGTACAAGTTCACGGTCTCCCACAGAACATATCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAGTTTGGCGCAATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGTTACAAGAATCGAAAAAGGCAACAAAAAATCATTGCGTTTTCCTAGATGAATCGGAAAATGGATCCGAAGATCGCAGGCCTGCCGATGGGATCACCCCGCAAACTACTCAAACGAAACGAAAACTTTTGCAGGCAGCGCGTAGTATTTTGCTGATAGCTTGTAGAATAGCCAGAGAATATCCTTTTTTTAGTTGTTTTTTTTTAGTTTTTGGCGCAATCTGTCTGACATCGTTTCTCCCAAAAAATTTTCATTGTTGAATCTTTTCGAATCAATTTTTGATCTCAAAATCACTCTTAATACTCACCTTGATCACCACTTCTTTTTTATCACTTCTCAAATCGAAC</canonical>
            <polymorphic>ATGTCGAGATTGAAATGAACTTTGCCAAAACTCTTGTATTTCGCACTGTTTTTAATTTTCATTTCGCGACAAAAACTGCTCAAAAATTTATTAATTCCTGCGAAAAGTACAAGTTCACGGTCTCCCACAGAACATATCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAGTTTGGCGCAATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATRTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGTTACAAGAATCGAAAAAGGCAACAAAAAATCATTGCGTTTTCCTAGATGAATCGGAAAATGGATCCGAAGATCGCAGGCCTGCCGATGGGATCACCCCGCAAACTACTCAAACGAAACGAAAACTTTTGCAGGCAGCGCGTAGTATTTTGCTGATAGCTTGTAGAATAGCCAGAGAATATCCTTTTTTTAGTTGTTTTTTTTTAGTTTTTGGCGCAATCTGTCTGACATCGTTTCTCCCAAAAAATTTTCATTGTTGAATCTTTTCGAATCAATTTTTGATCTCAAAATCACTCTTAATACTCACCTTGATCACCACTTCTTTTTTATCACTTCTCAAATCGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>270 146 132 132 102 90 84 44</canonical_bands>
                <polymorphic_bands>270 176 146 132 102 90 84</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>270 81 74 62 55 53 53 45 44 37 31 28 27 26 20 17 16 15 9 8 8 7 6 4 4</canonical_bands>
                <polymorphic_bands>270 81 74 62 55 53 53 45 44 43 37 31 28 27 20 16 15 9 8 8 7 6 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTAAATGTGGCTTTAGACCT</pcr_primer_p1>
		<pcr_primer_p2>ACAACTACTATGAAGCGAAGCTA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGT</canonical_amplicon>
		<polymorphic_amplicon>CTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATRTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32186</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>456467</contig_pos>
        <strand>-</strand>
        <context>AACAAATRTG[A/G]YGGAGACCGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTG</left_flank>
        <right_flank>AGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAGATTGAAATGAACTTTGCCAAAACTCTTGTATTTCGCACTGTTTTTAATTTTCATTTCGCGACAAAAACTGCTCAAAAATTTATTAATTCCTGCGAAAAGTACAAGTTCACGGTCTCCCACAGAACATATCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAGTTTGGCGCAATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGTTACAAGAATCGAAAAAGGCAACAAAAAATCATTGCGTTTTCCTAGATGAATCGGAAAATGGATCCGAAGATCGCAGGCCTGCCGATGGGATCACCCCGCAAACTACTCAAACGAAACGAAAACTTTTGCAGGCAGCGCGTAGTATTTTGCTGATAGCTTGTAGAATAGCCAGAGAATATCCTTTTTTTAGTTGTTTTTTTTTAGTTTTTGGCGCAATCTGTCTGACATCGTTTCTCCCAAAAAATTTTCATTGTTGAATCTTTTCGAATCAATTTTTGATCTCAAAATCACTCTTAATACTCACCTTGATCACCACTTCTTTTTTATCACTTCTCAAATCGAACTTG</canonical>
            <polymorphic>TCGAGATTGAAATGAACTTTGCCAAAACTCTTGTATTTCGCACTGTTTTTAATTTTCATTTCGCGACAAAAACTGCTCAAAAATTTATTAATTCCTGCGAAAAGTACAAGTTCACGGTCTCCCACAGAACATATCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAGTTTGGCGCAATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGRAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGTTACAAGAATCGAAAAAGGCAACAAAAAATCATTGCGTTTTCCTAGATGAATCGGAAAATGGATCCGAAGATCGCAGGCCTGCCGATGGGATCACCCCGCAAACTACTCAAACGAAACGAAAACTTTTGCAGGCAGCGCGTAGTATTTTGCTGATAGCTTGTAGAATAGCCAGAGAATATCCTTTTTTTAGTTGTTTTTTTTTAGTTTTTGGCGCAATCTGTCTGACATCGTTTCTCCCAAAAAATTTTCATTGTTGAATCTTTTCGAATCAATTTTTGATCTCAAAATCACTCTTAATACTCACCTTGATCACCACTTCTTTTTTATCACTTCTCAAATCGAACTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>242 219 185 142 97 67 48</canonical_bands>
                <polymorphic_bands>242 219 185 164 142 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTAAATGTGGCTTTAGACCT</pcr_primer_p1>
		<pcr_primer_p2>ACAACTACTATGAAGCGAAGCTA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGT</canonical_amplicon>
		<polymorphic_amplicon>CTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGRAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32187</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>456468</contig_pos>
        <strand>-</strand>
        <context>ACAAATRTGR[C/T]GGAGACCGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGC</left_flank>
        <right_flank>GGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAGATTGAAATGAACTTTGCCAAAACTCTTGTATTTCGCACTGTTTTTAATTTTCATTTCGCGACAAAAACTGCTCAAAAATTTATTAATTCCTGCGAAAAGTACAAGTTCACGGTCTCCCACAGAACATATCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAGTTTGGCGCAATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGTTACAAGAATCGAAAAAGGCAACAAAAAATCATTGCGTTTTCCTAGATGAATCGGAAAATGGATCCGAAGATCGCAGGCCTGCCGATGGGATCACCCCGCAAACTACTCAAACGAAACGAAAACTTTTGCAGGCAGCGCGTAGTATTTTGCTGATAGCTTGTAGAATAGCCAGAGAATATCCTTTTTTTAGTTGTTTTTTTTTAGTTTTTGGCGCAATCTGTCTGACATCGTTTCTCCCAAAAAATTTTCATTGTTGAATCTTTTCGAATCAATTTTTGATCTCAAAATCACTCTTAATACTCACCTTGATCACCACTTCTTTTTTATCACTTCTCAAATCGAACTTGG</canonical>
            <polymorphic>CGAGATTGAAATGAACTTTGCCAAAACTCTTGTATTTCGCACTGTTTTTAATTTTCATTTCGCGACAAAAACTGCTCAAAAATTTATTAATTCCTGCGAAAAGTACAAGTTCACGGTCTCCCACAGAACATATCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAGTTTGGCGCAATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGATTGAAAATGATTCAAATGATTCTTAGAAAATTAATAAAATTAAAATTAAAAATTGTCATTTTTGAAATTTTTTCTTCCGGAAAAGAACCATACAGGATTCTATAACCTCTAATTAATTTTTTAAGAATCATTTGAAACATCTTGAATCTCCACAAAACCAGATAAAAAATGCTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCYGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGTTACAAGAATCGAAAAAGGCAACAAAAAATCATTGCGTTTTCCTAGATGAATCGGAAAATGGATCCGAAGATCGCAGGCCTGCCGATGGGATCACCCCGCAAACTACTCAAACGAAACGAAAACTTTTGCAGGCAGCGCGTAGTATTTTGCTGATAGCTTGTAGAATAGCCAGAGAATATCCTTTTTTTAGTTGTTTTTTTTTAGTTTTTGGCGCAATCTGTCTGACATCGTTTCTCCCAAAAAATTTTCATTGTTGAATCTTTTCGAATCAATTTTTGATCTCAAAATCACTCTTAATACTCACCTTGATCACCACTTCTTTTTTATCACTTCTCAAATCGAACTTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>242 220 185 141 97 67 48</canonical_bands>
                <polymorphic_bands>242 220 185 164 141 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTAAATGTGGCTTTAGACCT</pcr_primer_p1>
		<pcr_primer_p2>ACAACTACTATGAAGCGAAGCTA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCAGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGT</canonical_amplicon>
		<polymorphic_amplicon>CTGTAAATGTGGCTTTAGACCTGCAATTGTGATCGGGCCAAATTTTTTATCTGTAGATCACAAATAAAATTGGAGTTCGTAACAAATTTGCYGGAGACCGTGTTAGGTATAATTGTGAAAGCTTTTGGGCCAACATCGCGATTTTCGGCTGAAAAATTATCCAGGAACGGCCTGAAACGCTCTTCTGCAGAGAAACCGCCTGAACTGTTTTCTTTAAATTCTAGCTTCGCTTCATAGTAGTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32188</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>458221</contig_pos>
        <strand>-</strand>
        <context>GCAAGTCATA[A/C/T/G]AGAGGGCAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C/T/G</alleles>
        <left_flank>GTGCAGTTTCTGTGTCTCTTCTGTTGTTGTTTTGCGCGCAGCAAGTCATA</left_flank>
        <right_flank>AGAGGGCAGAGAGGGCATACGTGTCGCACACCTGGCACATTTTTAACTGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAACAATTTGAAACAGAGAATTCTTCTCGAATAACCTAGAAAAATGACTGAAAACGACTGAAAACCTGCTGAGAATAGTGTTTTAACGAAGAAAAATGTATCAAGAAAATAATCAATGAACAAATGCGCCCCATTGCCACACGCTATAGAGAAGAGAGACGCAGAGTGCGTCTGATGACCGGTGTAGATAAGAAAGAGAAATGACGAGAAATGAAGAGACGAAAAGAAAAGAGAAAAAAACATCTACTTTCCAGCGCGCTAAAACTACTCTCCCTCAGACGTTCTCACAACGATAGGAGGGCACAGAGCAAGACTGACCTCTCTCCTTGCAGATCGTTTTCCTCGATTGGTTGCGCTCTCATTTGTGGAAAACCGACGGTTGTTTATGTGACCTTCCCCCATTATCTACCGATTAACGACTCCTCTCTAAACGAACGGACCATCTAGTGTGCAGTTTCTGTGTCTCTTCTGTTGTTGTTTTGCGCGCAGCAAGTCATATAGAGGGCAGAGAGGGCATACGTGTCGCACACCTGGCACATTTTTAACTGCGCAATAATTTTTAGATAGCTGGAATATCGTCAGTACAAAAACTCTCAATCGTGAATAGAACCGTTCTTAATGTTCGGAGGGAAGCGAAACTCTATTGAACAGAGCACGGATAAAAATATGTTTTATTTTTAATCACACCATTTCTTCTCGCAAAAATTCTGATGAAAGAATTGTCCACGAAATATTGGGGTATCAAATTCCTGACATTAAAATACAAAGCAATCAAAAAATGTACAGTAAATCAAGTTTTTTAGGCGATAATAATCGAAAAGAAGAAACATATACAGTAAACAGATACGTTGTTTCTAAACAATGAAGCGATTTCTAAAACTGAAAAGTTTTAAAAAGGGAATTAAAGAGAGCTCTGTTAGAATAGTCCAAAAAGTAGGTGGAAAAGATCTCACTTTTAGGAAATCCCAAAATGTTTGAATAAATTCTGCAAAATCAAAA</canonical>
            <polymorphic>CAAACAATTTGAAACAGAGAATTCTTCTCGAATAACCTAGAAAAATGACTGAAAACGACTGAAAACCTGCTGAGAATAGTGTTTTAACGAAGAAAAATGTATCAAGAAAATAATCAATGAACAAATGCGCCCCATTGCCACACGCTATAGAGAAGAGAGACGCAGAGTGCGTCTGATGACCGGTGTAGATAAGAAAGAGAAATGACGAGAAATGAAGAGACGAAAAGAAAAGAGAAAAAAACATCTACTTTCCAGCGCGCTAAAACTACTCTCCCTCAGACGTTCTCACAACGATAGGAGGGCACAGAGCAAGACTGACCTCTCTCCTTGCAGATCGTTTTCCTCGATTGGTTGCGCTCTCATTTGTGGAAAACCGACGGTTGTTTATGTGACCTTCCCCCATTATCTACCGATTAACGACTCCTCTCTAAACGAACGGACCATCTAGTGTGCAGTTTCTGTGTCTCTTCTGTTGTTGTTTTGCGCGCAGCAAGTCATAMAGAGGGCAGAGAGGGCATACGTGTCGCACACCTGGCACATTTTTAACTGCGCAATAATTTTTAGATAGCTGGAATATCGTCAGTACAAAAACTCTCAATCGTGAATAGAACCGTTCTTAATGTTCGGAGGGAAGCGAAACTCTATTGAACAGAGCACGGATAAAAATATGTTTTATTTTTAATCACACCATTTCTTCTCGCAAAAATTCTGATGAAAGAATTGTCCACGAAATATTGGGGTATCAAATTCCTGACATTAAAATACAAAGCAATCAAAAAATGTACAGTAAATCAAGTTTTTTAGGCGATAATAATCGAAAAGAAGAAACATATACAGTAAACAGATACGTTGTTTCTAAACAATGAAGCGATTTCTAAAACTGAAAAGTTTTAAAAAGGGAATTAAAGAGAGCTCTGTTAGAATAGTCCAAAAAGTAGGTGGAAAAGATCTCACTTTTAGGAAATCCCAAAATGTTTGAATAAATTCTGCAAAATCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTAGTGTGCAGTTTCTGTGTC</pcr_primer_p1>
		<pcr_primer_p2>AATGGTGTGATTAAAAATAAAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTAGTGTGCAGTTTCTGTGTCTCTTCTGTTGTTGTTTTGCGCGCAGCAAGTCATATAGAGGGCAGAGAGGGCATACGTGTCGCACACCTGGCACATTTTTAACTGCGCAATAATTTTTAGATAGCTGGAATATCGTCAGTACAAAAACTCTCAATCGTGAATAGAACCGTTCTTAATGTTCGGAGGGAAGCGAAACTCTATTGAACAGAGCACGGATAAAAATATGTTTTATTTTTAATCACACCATT</canonical_amplicon>
		<polymorphic_amplicon>ATCTAGTGTGCAGTTTCTGTGTCTCTTCTGTTGTTGTTTTGCGCGCAGCAAGTCATAMAGAGGGCAGAGAGGGCATACGTGTCGCACACCTGGCACATTTTTAACTGCGCAATAATTTTTAGATAGCTGGAATATCGTCAGTACAAAAACTCTCAATCGTGAATAGAACCGTTCTTAATGTTCGGAGGGAAGCGAAACTCTATTGAACAGAGCACGGATAAAAATATGTTTTATTTTTAATCACACCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32189</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>458601</contig_pos>
        <strand>-</strand>
        <context>GATTTCTAAA[G/T/A/C]CTGAAAAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T/A/C</alleles>
        <left_flank>ATATACAGTAAACAGATACGTTGTTTCTAAACAATGAAGCGATTTCTAAA</left_flank>
        <right_flank>CTGAAAAGTTTTAAAAAGGGAATTAAAGAGAGCTCTGTTAGAATAGTCCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTTATGTGACCTTCCCCCATTATCTACCGATTAACGACTCCTCTCTAAACGAACGGACCATCTAGTGTGCAGTTTCTGTGTCTCTTCTGTTGTTGTTTTGCGCGCAGCAAGTCATATAGAGGGCAGAGAGGGCATACGTGTCGCACACCTGGCACATTTTTAACTGCGCAATAATTTTTAGATAGCTGGAATATCGTCAGTACAAAAACTCTCAATCGTGAATAGAACCGTTCTTAATGTTCGGAGGGAAGCGAAACTCTATTGAACAGAGCACGGATAAAAATATGTTTTATTTTTAATCACACCATTTCTTCTCGCAAAAATTCTGATGAAAGAATTGTCCACGAAATATTGGGGTATCAAATTCCTGACATTAAAATACAAAGCAATCAAAAAATGTACAGTAAATCAAGTTTTTTAGGCGATAATAATCGAAAAGAAGAAACATATACAGTAAACAGATACGTTGTTTCTAAACAATGAAGCGATTTCTAAAACTGAAAAGTTTTAAAAAGGGAATTAAAGAGAGCTCTGTTAGAATAGTCCAAAAAGTAGGTGGAAAAGATCTCACTTTTAGGAAATCCCAAAATGTTTGAATAAATTCTGCAAAATCAAAAAATTCAACTATTGAAAAAGTGAAGATTTTGAAAATTTGTACTTTTGAATTTTTACAATTTTTCGGAAGATTGGGCAAAGTCTGAGAAATTTTGAATTTTGGAAATTAACAAAAAAAAAATTCTCCAAAAAAGCTCTCCTATCTCCGTTTTTCTTTTTTTTTACTCATTTTAACTATAATAATAGAAATAAGATTTGGATCACTATAATTTTTTTAACATTTTAATTTTTTCATTCGAAAAAGAATAGAAAATTCCAGAACTTCTAGAAAACACAACATTTTTTAATTCAAAAATGCTGAAAAAATTGAACTTTCATAAAAAACGATGCGGAGTTTCAAAAAATTCAAAAATATATGTGTCTAAAACGTGTAAAGAAAAAT</canonical>
            <polymorphic>TTGTTTATGTGACCTTCCCCCATTATCTACCGATTAACGACTCCTCTCTAAACGAACGGACCATCTAGTGTGCAGTTTCTGTGTCTCTTCTGTTGTTGTTTTGCGCGCAGCAAGTCATATAGAGGGCAGAGAGGGCATACGTGTCGCACACCTGGCACATTTTTAACTGCGCAATAATTTTTAGATAGCTGGAATATCGTCAGTACAAAAACTCTCAATCGTGAATAGAACCGTTCTTAATGTTCGGAGGGAAGCGAAACTCTATTGAACAGAGCACGGATAAAAATATGTTTTATTTTTAATCACACCATTTCTTCTCGCAAAAATTCTGATGAAAGAATTGTCCACGAAATATTGGGGTATCAAATTCCTGACATTAAAATACAAAGCAATCAAAAAATGTACAGTAAATCAAGTTTTTTAGGCGATAATAATCGAAAAGAAGAAACATATACAGTAAACAGATACGTTGTTTCTAAACAATGAAGCGATTTCTAAAKCTGAAAAGTTTTAAAAAGGGAATTAAAGAGAGCTCTGTTAGAATAGTCCAAAAAGTAGGTGGAAAAGATCTCACTTTTAGGAAATCCCAAAATGTTTGAATAAATTCTGCAAAATCAAAAAATTCAACTATTGAAAAAGTGAAGATTTTGAAAATTTGTACTTTTGAATTTTTACAATTTTTCGGAAGATTGGGCAAAGTCTGAGAAATTTTGAATTTTGGAAATTAACAAAAAAAAAATTCTCCAAAAAAGCTCTCCTATCTCCGTTTTTCTTTTTTTTTACTCATTTTAACTATAATAATAGAAATAAGATTTGGATCACTATAATTTTTTTAACATTTTAATTTTTTCATTCGAAAAAGAATAGAAAATTCCAGAACTTCTAGAAAACACAACATTTTTTAATTCAAAAATGCTGAAAAAATTGAACTTTCATAAAAAACGATGCGGAGTTTCAAAAAATTCAAAAATATATGTGTCTAAAACGTGTAAAGAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTATCAAATTCCTGACATTAAA</pcr_primer_p1>
		<pcr_primer_p2>TTATTCAAACATTTTGGGATTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GGTATCAAATTCCTGACATTAAAATACAAAGCAATCAAAAAATGTACAGTAAATCAAGTTTTTTAGGCGATAATAATCGAAAAGAAGAAACATATACAGTAAACAGATACGTTGTTTCTAAACAATGAAGCGATTTCTAAAACTGAAAAGTTTTAAAAAGGGAATTAAAGAGAGCTCTGTTAGAATAGTCCAAAAAGTAGGTGGAAAAGATCTCACTTTTAGGAAATCCCAAAATGTTTGAATAA</canonical_amplicon>
		<polymorphic_amplicon>GGTATCAAATTCCTGACATTAAAATACAAAGCAATCAAAAAATGTACAGTAAATCAAGTTTTTTAGGCGATAATAATCGAAAAGAAGAAACATATACAGTAAACAGATACGTTGTTTCTAAACAATGAAGCGATTTCTAAAKCTGAAAAGTTTTAAAAAGGGAATTAAAGAGAGCTCTGTTAGAATAGTCCAAAAAGTAGGTGGAAAAGATCTCACTTTTAGGAAATCCCAAAATGTTTGAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32190</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>458638</contig_pos>
        <strand>-</strand>
        <context>AGAGAGCTCT[C/T/G/A]TTAGAATAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T/G/A</alleles>
        <left_flank>AGCGATTTCTAAAACTGAAAAGTTTTAAAAAGGGAATTAAAGAGAGCTCT</left_flank>
        <right_flank>TTAGAATAGTCCAAAAAGTAGGTGGAAAAGATCTCACTTTTAGGAAATCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACTCCTCTCTAAACGAACGGACCATCTAGTGTGCAGTTTCTGTGTCTCTTCTGTTGTTGTTTTGCGCGCAGCAAGTCATATAGAGGGCAGAGAGGGCATACGTGTCGCACACCTGGCACATTTTTAACTGCGCAATAATTTTTAGATAGCTGGAATATCGTCAGTACAAAAACTCTCAATCGTGAATAGAACCGTTCTTAATGTTCGGAGGGAAGCGAAACTCTATTGAACAGAGCACGGATAAAAATATGTTTTATTTTTAATCACACCATTTCTTCTCGCAAAAATTCTGATGAAAGAATTGTCCACGAAATATTGGGGTATCAAATTCCTGACATTAAAATACAAAGCAATCAAAAAATGTACAGTAAATCAAGTTTTTTAGGCGATAATAATCGAAAAGAAGAAACATATACAGTAAACAGATACGTTGTTTCTAAACAATGAAGCGATTTCTAAAACTGAAAAGTTTTAAAAAGGGAATTAAAGAGAGCTCTGTTAGAATAGTCCAAAAAGTAGGTGGAAAAGATCTCACTTTTAGGAAATCCCAAAATGTTTGAATAAATTCTGCAAAATCAAAAAATTCAACTATTGAAAAAGTGAAGATTTTGAAAATTTGTACTTTTGAATTTTTACAATTTTTCGGAAGATTGGGCAAAGTCTGAGAAATTTTGAATTTTGGAAATTAACAAAAAAAAAATTCTCCAAAAAAGCTCTCCTATCTCCGTTTTTCTTTTTTTTTACTCATTTTAACTATAATAATAGAAATAAGATTTGGATCACTATAATTTTTTTAACATTTTAATTTTTTCATTCGAAAAAGAATAGAAAATTCCAGAACTTCTAGAAAACACAACATTTTTTAATTCAAAAATGCTGAAAAAATTGAACTTTCATAAAAAACGATGCGGAGTTTCAAAAAATTCAAAAATATATGTGTCTAAAACGTGTAAAGAAAAATCAATATTGGTTTAAACTAGCGAAATGGACTGTTTTAA</canonical>
            <polymorphic>CGACTCCTCTCTAAACGAACGGACCATCTAGTGTGCAGTTTCTGTGTCTCTTCTGTTGTTGTTTTGCGCGCAGCAAGTCATATAGAGGGCAGAGAGGGCATACGTGTCGCACACCTGGCACATTTTTAACTGCGCAATAATTTTTAGATAGCTGGAATATCGTCAGTACAAAAACTCTCAATCGTGAATAGAACCGTTCTTAATGTTCGGAGGGAAGCGAAACTCTATTGAACAGAGCACGGATAAAAATATGTTTTATTTTTAATCACACCATTTCTTCTCGCAAAAATTCTGATGAAAGAATTGTCCACGAAATATTGGGGTATCAAATTCCTGACATTAAAATACAAAGCAATCAAAAAATGTACAGTAAATCAAGTTTTTTAGGCGATAATAATCGAAAAGAAGAAACATATACAGTAAACAGATACGTTGTTTCTAAACAATGAAGCGATTTCTAAAACTGAAAAGTTTTAAAAAGGGAATTAAAGAGAGCTCTYTTAGAATAGTCCAAAAAGTAGGTGGAAAAGATCTCACTTTTAGGAAATCCCAAAATGTTTGAATAAATTCTGCAAAATCAAAAAATTCAACTATTGAAAAAGTGAAGATTTTGAAAATTTGTACTTTTGAATTTTTACAATTTTTCGGAAGATTGGGCAAAGTCTGAGAAATTTTGAATTTTGGAAATTAACAAAAAAAAAATTCTCCAAAAAAGCTCTCCTATCTCCGTTTTTCTTTTTTTTTACTCATTTTAACTATAATAATAGAAATAAGATTTGGATCACTATAATTTTTTTAACATTTTAATTTTTTCATTCGAAAAAGAATAGAAAATTCCAGAACTTCTAGAAAACACAACATTTTTTAATTCAAAAATGCTGAAAAAATTGAACTTTCATAAAAAACGATGCGGAGTTTCAAAAAATTCAAAAATATATGTGTCTAAAACGTGTAAAGAAAAATCAATATTGGTTTAAACTAGCGAAATGGACTGTTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAAACAATGAAGCGATTTCTAA</pcr_primer_p1>
		<pcr_primer_p2>ATTTCCAAAATTCAAAATTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAAACAATGAAGCGATTTCTAAAACTGAAAAGTTTTAAAAAGGGAATTAAAGAGAGCTCTGTTAGAATAGTCCAAAAAGTAGGTGGAAAAGATCTCACTTTTAGGAAATCCCAAAATGTTTGAATAAATTCTGCAAAATCAAAAAATTCAACTATTGAAAAAGTGAAGATTTTGAAAATTTGTACTTTTGAATTTTTACAATTTTTCGGAAGATTGGGCAAAGTCTGAGAAATTTTGAATTTTGGAAAT</canonical_amplicon>
		<polymorphic_amplicon>CTAAACAATGAAGCGATTTCTAAAACTGAAAAGTTTTAAAAAGGGAATTAAAGAGAGCTCTYTTAGAATAGTCCAAAAAGTAGGTGGAAAAGATCTCACTTTTAGGAAATCCCAAAATGTTTGAATAAATTCTGCAAAATCAAAAAATTCAACTATTGAAAAAGTGAAGATTTTGAAAATTTGTACTTTTGAATTTTTACAATTTTTCGGAAGATTGGGCAAAGTCTGAGAAATTTTGAATTTTGGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32191</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>458660</contig_pos>
        <strand>-</strand>
        <context>CAAAAAGTAG[A/C/G/T]TGGAAAAGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C/G/T</alleles>
        <left_flank>TTTTAAAAAGGGAATTAAAGAGAGCTCTGTTAGAATAGTCCAAAAAGTAG</left_flank>
        <right_flank>TGGAAAAGATCTCACTTTTAGGAAATCCCAAAATGTTTGAATAAATTCTG</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCATCTAGTGTGCAGTTTCTGTGTCTCTTCTGTTGTTGTTTTGCGCGCAGCAAGTCATATAGAGGGCAGAGAGGGCATACGTGTCGCACACCTGGCACATTTTTAACTGCGCAATAATTTTTAGATAGCTGGAATATCGTCAGTACAAAAACTCTCAATCGTGAATAGAACCGTTCTTAATGTTCGGAGGGAAGCGAAACTCTATTGAACAGAGCACGGATAAAAATATGTTTTATTTTTAATCACACCATTTCTTCTCGCAAAAATTCTGATGAAAGAATTGTCCACGAAATATTGGGGTATCAAATTCCTGACATTAAAATACAAAGCAATCAAAAAATGTACAGTAAATCAAGTTTTTTAGGCGATAATAATCGAAAAGAAGAAACATATACAGTAAACAGATACGTTGTTTCTAAACAATGAAGCGATTTCTAAAACTGAAAAGTTTTAAAAAGGGAATTAAAGAGAGCTCTGTTAGAATAGTCCAAAAAGTAGGTGGAAAAGATCTCACTTTTAGGAAATCCCAAAATGTTTGAATAAATTCTGCAAAATCAAAAAATTCAACTATTGAAAAAGTGAAGATTTTGAAAATTTGTACTTTTGAATTTTTACAATTTTTCGGAAGATTGGGCAAAGTCTGAGAAATTTTGAATTTTGGAAATTAACAAAAAAAAAATTCTCCAAAAAAGCTCTCCTATCTCCGTTTTTCTTTTTTTTTACTCATTTTAACTATAATAATAGAAATAAGATTTGGATCACTATAATTTTTTTAACATTTTAATTTTTTCATTCGAAAAAGAATAGAAAATTCCAGAACTTCTAGAAAACACAACATTTTTTAATTCAAAAATGCTGAAAAAATTGAACTTTCATAAAAAACGATGCGGAGTTTCAAAAAATTCAAAAATATATGTGTCTAAAACGTGTAAAGAAAAATCAATATTGGTTTAAACTAGCGAAATGGACTGTTTTAAGAGTACTTCAACTAATTCCAAA</canonical>
            <polymorphic>ACCATCTAGTGTGCAGTTTCTGTGTCTCTTCTGTTGTTGTTTTGCGCGCAGCAAGTCATATAGAGGGCAGAGAGGGCATACGTGTCGCACACCTGGCACATTTTTAACTGCGCAATAATTTTTAGATAGCTGGAATATCGTCAGTACAAAAACTCTCAATCGTGAATAGAACCGTTCTTAATGTTCGGAGGGAAGCGAAACTCTATTGAACAGAGCACGGATAAAAATATGTTTTATTTTTAATCACACCATTTCTTCTCGCAAAAATTCTGATGAAAGAATTGTCCACGAAATATTGGGGTATCAAATTCCTGACATTAAAATACAAAGCAATCAAAAAATGTACAGTAAATCAAGTTTTTTAGGCGATAATAATCGAAAAGAAGAAACATATACAGTAAACAGATACGTTGTTTCTAAACAATGAAGCGATTTCTAAAACTGAAAAGTTTTAAAAAGGGAATTAAAGAGAGCTCTGTTAGAATAGTCCAAAAAGTAGMTGGAAAAGATCTCACTTTTAGGAAATCCCAAAATGTTTGAATAAATTCTGCAAAATCAAAAAATTCAACTATTGAAAAAGTGAAGATTTTGAAAATTTGTACTTTTGAATTTTTACAATTTTTCGGAAGATTGGGCAAAGTCTGAGAAATTTTGAATTTTGGAAATTAACAAAAAAAAAATTCTCCAAAAAAGCTCTCCTATCTCCGTTTTTCTTTTTTTTTACTCATTTTAACTATAATAATAGAAATAAGATTTGGATCACTATAATTTTTTTAACATTTTAATTTTTTCATTCGAAAAAGAATAGAAAATTCCAGAACTTCTAGAAAACACAACATTTTTTAATTCAAAAATGCTGAAAAAATTGAACTTTCATAAAAAACGATGCGGAGTTTCAAAAAATTCAAAAATATATGTGTCTAAAACGTGTAAAGAAAAATCAATATTGGTTTAAACTAGCGAAATGGACTGTTTTAAGAGTACTTCAACTAATTCCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>214 180 86 71 70 68 66 60 53 40 29 12 11 11 11 7 5 2 2 2</canonical_bands>
                <polymorphic_bands>226 180 86 71 70 68 66 60 53 40 29 11 11 11 7 5 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAAACAATGAAGCGATTTCTAA</pcr_primer_p1>
		<pcr_primer_p2>ATTTCCAAAATTCAAAATTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAAACAATGAAGCGATTTCTAAAACTGAAAAGTTTTAAAAAGGGAATTAAAGAGAGCTCTGTTAGAATAGTCCAAAAAGTAGGTGGAAAAGATCTCACTTTTAGGAAATCCCAAAATGTTTGAATAAATTCTGCAAAATCAAAAAATTCAACTATTGAAAAAGTGAAGATTTTGAAAATTTGTACTTTTGAATTTTTACAATTTTTCGGAAGATTGGGCAAAGTCTGAGAAATTTTGAATTTTGGAAAT</canonical_amplicon>
		<polymorphic_amplicon>CTAAACAATGAAGCGATTTCTAAAACTGAAAAGTTTTAAAAAGGGAATTAAAGAGAGCTCTGTTAGAATAGTCCAAAAAGTAGMTGGAAAAGATCTCACTTTTAGGAAATCCCAAAATGTTTGAATAAATTCTGCAAAATCAAAAAATTCAACTATTGAAAAAGTGAAGATTTTGAAAATTTGTACTTTTGAATTTTTACAATTTTTCGGAAGATTGGGCAAAGTCTGAGAAATTTTGAATTTTGGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32192</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>458714</contig_pos>
        <strand>-</strand>
        <context>AATTCTGCAA[C/T]ATCAAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAGATCTCACTTTTAGGAAATCCCAAAATGTTTGAATAAATTCTGCAA</left_flank>
        <right_flank>ATCAAAAAATTCAACTATTGAAAAAGTGAAGATTTTGAAAATTTGTACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCATATAGAGGGCAGAGAGGGCATACGTGTCGCACACCTGGCACATTTTTAACTGCGCAATAATTTTTAGATAGCTGGAATATCGTCAGTACAAAAACTCTCAATCGTGAATAGAACCGTTCTTAATGTTCGGAGGGAAGCGAAACTCTATTGAACAGAGCACGGATAAAAATATGTTTTATTTTTAATCACACCATTTCTTCTCGCAAAAATTCTGATGAAAGAATTGTCCACGAAATATTGGGGTATCAAATTCCTGACATTAAAATACAAAGCAATCAAAAAATGTACAGTAAATCAAGTTTTTTAGGCGATAATAATCGAAAAGAAGAAACATATACAGTAAACAGATACGTTGTTTCTAAACAATGAAGCGATTTCTAAAACTGAAAAGTTTTAAAAAGGGAATTAAAGAGAGCTCTGTTAGAATAGTCCAAAAAGTAGGTGGAAAAGATCTCACTTTTAGGAAATCCCAAAATGTTTGAATAAATTCTGCAAAATCAAAAAATTCAACTATTGAAAAAGTGAAGATTTTGAAAATTTGTACTTTTGAATTTTTACAATTTTTCGGAAGATTGGGCAAAGTCTGAGAAATTTTGAATTTTGGAAATTAACAAAAAAAAAATTCTCCAAAAAAGCTCTCCTATCTCCGTTTTTCTTTTTTTTTACTCATTTTAACTATAATAATAGAAATAAGATTTGGATCACTATAATTTTTTTAACATTTTAATTTTTTCATTCGAAAAAGAATAGAAAATTCCAGAACTTCTAGAAAACACAACATTTTTTAATTCAAAAATGCTGAAAAAATTGAACTTTCATAAAAAACGATGCGGAGTTTCAAAAAATTCAAAAATATATGTGTCTAAAACGTGTAAAGAAAAATCAATATTGGTTTAAACTAGCGAAATGGACTGTTTTAAGAGTACTTCAACTAATTCCAAAATAATTTCAATTTTTTTATTTAAAAACGTGAGATTTTTCATATTCCAGAGTGGC</canonical>
            <polymorphic>GTCATATAGAGGGCAGAGAGGGCATACGTGTCGCACACCTGGCACATTTTTAACTGCGCAATAATTTTTAGATAGCTGGAATATCGTCAGTACAAAAACTCTCAATCGTGAATAGAACCGTTCTTAATGTTCGGAGGGAAGCGAAACTCTATTGAACAGAGCACGGATAAAAATATGTTTTATTTTTAATCACACCATTTCTTCTCGCAAAAATTCTGATGAAAGAATTGTCCACGAAATATTGGGGTATCAAATTCCTGACATTAAAATACAAAGCAATCAAAAAATGTACAGTAAATCAAGTTTTTTAGGCGATAATAATCGAAAAGAAGAAACATATACAGTAAACAGATACGTTGTTTCTAAACAATGAAGCGATTTCTAAAACTGAAAAGTTTTAAAAAGGGAATTAAAGAGAGCTCTGTTAGAATAGTCCAAAAAGTAGGTGGAAAAGATCTCACTTTTAGGAAATCCCAAAATGTTTGAATAAATTCTGCAAYATCAAAAAATTCAACTATTGAAAAAGTGAAGATTTTGAAAATTTGTACTTTTGAATTTTTACAATTTTTCGGAAGATTGGGCAAAGTCTGAGAAATTTTGAATTTTGGAAATTAACAAAAAAAAAATTCTCCAAAAAAGCTCTCCTATCTCCGTTTTTCTTTTTTTTTACTCATTTTAACTATAATAATAGAAATAAGATTTGGATCACTATAATTTTTTTAACATTTTAATTTTTTCATTCGAAAAAGAATAGAAAATTCCAGAACTTCTAGAAAACACAACATTTTTTAATTCAAAAATGCTGAAAAAATTGAACTTTCATAAAAAACGATGCGGAGTTTCAAAAAATTCAAAAATATATGTGTCTAAAACGTGTAAAGAAAAATCAATATTGGTTTAAACTAGCGAAATGGACTGTTTTAAGAGTACTTCAACTAATTCCAAAATAATTTCAATTTTTTTATTTAAAAACGTGAGATTTTTCATATTCCAGAGTGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAAACAATGAAGCGATTTCTAA</pcr_primer_p1>
		<pcr_primer_p2>ATTTCCAAAATTCAAAATTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAAACAATGAAGCGATTTCTAAAACTGAAAAGTTTTAAAAAGGGAATTAAAGAGAGCTCTGTTAGAATAGTCCAAAAAGTAGGTGGAAAAGATCTCACTTTTAGGAAATCCCAAAATGTTTGAATAAATTCTGCAAAATCAAAAAATTCAACTATTGAAAAAGTGAAGATTTTGAAAATTTGTACTTTTGAATTTTTACAATTTTTCGGAAGATTGGGCAAAGTCTGAGAAATTTTGAATTTTGGAAAT</canonical_amplicon>
		<polymorphic_amplicon>CTAAACAATGAAGCGATTTCTAAAACTGAAAAGTTTTAAAAAGGGAATTAAAGAGAGCTCTGTTAGAATAGTCCAAAAAGTAGGTGGAAAAGATCTCACTTTTAGGAAATCCCAAAATGTTTGAATAAATTCTGCAAYATCAAAAAATTCAACTATTGAAAAAGTGAAGATTTTGAAAATTTGTACTTTTGAATTTTTACAATTTTTCGGAAGATTGGGCAAAGTCTGAGAAATTTTGAATTTTGGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32193</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>490793</contig_pos>
        <strand></strand>
        <context>TCTCACCATT[C/T]TCGGATACAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGAGAAGGGATGCGACTACCATCTTGCCATCTGCATCCTTCTCACCATT</left_flank>
        <right_flank>TCGGATACATTCCAGGAATCATCTACGCTTGCTACGTCATCCTCGCCTAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTCGTTGAAGTTCATGCGACAAATTTCCAAACTCTGTGGATCTAGCCACATGTCACAAAAATTGGCCACATGTCACAAAATTCGCATGACCTTTTTTCCGCTTGATGCACAGTAACCCATAGTGATTTTGTTTTCGGGACATTCCCATGGATACATCTTCTCCGCCTCGCTTAGTCCTCCACTTTCATTTCTTCCATTTCCCTTCACCTTTGCATCTTTTTCTCTGAAAAATAGCTTGTTTCTCTTTGTAATTTTTTCAAATTTGAGTTTTTCAGTTTCTTAAAACTTCTGAAAACTACTGTTCGCCATGGCTCTTACCTGCACCGACATTCCAAAGTTCATCTGCGCTGTTCTTCTTCCAGTAAGTTTTAGTTTTATTTATTTATAGTCACCGTGAAAACTATAACAAGTACATATTTTGAATTTTCAGCCAGTTGGAGTCTTCTTAGAGAAGGGATGCGACTACCATCTTGCCATCTGCATCCTTCTCACCATTCTCGGATACATTCCAGGAATCATCTACGCTTGCTACGTCATCCTCGCCTATTAAACGATGAAAAATGCTTTTCTGTCATAATTGACGTCCTAACACTGCTTTCCATGTTTCCATGTATAATATAATTTTAAATCAATAAAATTTGGGATGATTGAACGCATATATTTTTTTCTCAATTTCACGGAATCGGAAATATAAAAAATCGGATTTAGAAAAAGTTATTTTGAAAAGTGTACCTAGTTAATGATCTAAGCCACTGAAGGAAGCGCCGTTAATGATCTAAGCCACTGAAGGAAACTGACAAAATATGCTTGACATTGCTATAAAAGTTTGTTCAGTAGACCACTTTTTAATCTTTTTCCGGTAATGAGATATGCGAGCTAAAAATTAACAGGTCGTTCTATAAGAGTGTTCACGCTATACATTTATTGAGAAAAAAATAATAAAAAGACTGTCGTCCGAAAAACAAAAAAAAATGTTTTCCCCACAATTTCAAGAGAT</canonical>
            <polymorphic>AAAGTCGTTGAAGTTCATGCGACAAATTTCCAAACTCTGTGGATCTAGCCACATGTCACAAAAATTGGCCACATGTCACAAAATTCGCATGACCTTTTTTCCGCTTGATGCACAGTAACCCATAGTGATTTTGTTTTCGGGACATTCCCATGGATACATCTTCTCCGCCTCGCTTAGTCCTCCACTTTCATTTCTTCCATTTCCCTTCACCTTTGCATCTTTTTCTCTGAAAAATAGCTTGTTTCTCTTTGTAATTTTTTCAAATTTGAGTTTTTCAGTTTCTTAAAACTTCTGAAAACTACTGTTCGCCATGGCTCTTACCTGCACCGACATTCCAAAGTTCATCTGCGCTGTTCTTCTTCCAGTAAGTTTTAGTTTTATTTATTTATAGTCACCGTGAAAACTATAACAAGTACATATTTTGAATTTTCAGCCAGTTGGAGTCTTCTTAGAGAAGGGATGCGACTACCATCTTGCCATCTGCATCCTTCTCACCATTYTCGGATACATTCCAGGAATCATCTACGCTTGCTACGTCATCCTCGCCTATTAAACGATGAAAAATGCTTTTCTGTCATAATTGACGTCCTAACACTGCTTTCCATGTTTCCATGTATAATATAATTTTAAATCAATAAAATTTGGGATGATTGAACGCATATATTTTTTTCTCAATTTCACGGAATCGGAAATATAAAAAATCGGATTTAGAAAAAGTTATTTTGAAAAGTGTACCTAGTTAATGATCTAAGCCACTGAAGGAAGCGCCGTTAATGATCTAAGCCACTGAAGGAAACTGACAAAATATGCTTGACATTGCTATAAAAGTTTGTTCAGTAGACCACTTTTTAATCTTTTTCCGGTAATGAGATATGCGAGCTAAAAATTAACAGGTCGTTCTATAAGAGTGTTCACGCTATACATTTATTGAGAAAAAAATAATAAAAAGACTGTCGTCCGAAAAACAAAAAAAAATGTTTTCCCCACAATTTCAAGAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTTTGAATTTTCAGCCAGTT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATATATGCGTTCAATCATC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATATTTTGAATTTTCAGCCAGTTGGAGTCTTCTTAGAGAAGGGATGCGACTACCATCTTGCCATCTGCATCCTTCTCACCATTCTCGGATACATTCCAGGAATCATCTACGCTTGCTACGTCATCCTCGCCTATTAAACGATGAAAAATGCTTTTCTGTCATAATTGACGTCCTAACACTGCTTTCCATGTTTCCATGTATAATATAATTTTAAATCAATAAAATTTGGGATGATTGAACGCATATATTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATATTTTGAATTTTCAGCCAGTTGGAGTCTTCTTAGAGAAGGGATGCGACTACCATCTTGCCATCTGCATCCTTCTCACCATTYTCGGATACATTCCAGGAATCATCTACGCTTGCTACGTCATCCTCGCCTATTAAACGATGAAAAATGCTTTTCTGTCATAATTGACGTCCTAACACTGCTTTCCATGTTTCCATGTATAATATAATTTTAAATCAATAAAATTTGGGATGATTGAACGCATATATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32194</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>505904</contig_pos>
        <strand>+</strand>
        <context>CACTGTGTTC[C/T]CAAGGAAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGTAGCGCTTTAGCTCGGTGAACATGAAGGGATAGGTGACACTGTGTTC</left_flank>
        <right_flank>CAAGGAAAGAGTGAGAGAGAGAGAGCGATGGAAGCAGCCGGCAGATGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAGCCACTATAAAAGGAAAAGGAGGAAATGGGAACAATTTTGAGATGGCGAAAGGAGATGATGCAGGATGAGGAAGAGGTGAAAGTCACGGAAAGTCACGGATAGAAAATAAGGATATATTGATTGACACTCGAGGTGTGAGGTGTCAAAAACTATTGCAAAAAATAATTGAAGAAAATGAGCTTACCTTTTTGATGGCAATGTTGTTATTCAATGTGGAGCTGGACATCTGGGCACGATTCGTGGATTGAGTTAAGCTTCTTCTTGTTTTCGACTCCTCCGAGCTGAGAAAAAAAATTTCAAAATACCAAAAGAGCTCTAATCAAGATTCTTACCTGCTTCTCGCCAGCGACAGAGGTTTCGGTACAGAGCTCACGACGAACGAACCAGATGAGAAGAGAAAGTGGGACGGAGAAGAAAAGAGCGCAGGTGTAAAGAGACAAAATCGAGTAGCGCTTTAGCTCGGTGAACATGAAGGGATAGGTGACACTGTGTTCCCAAGGAAAGAGTGAGAGAGAGAGAGCGATGGAAGCAGCCGGCAGATGAATCGAAGATAAAGCACACAGTCGGACTGCGCTCTAGATGCGACAATAGACCGTCTATTCGATATCGAACACTGTATGAAATGAAGGGGACGACGGGATGAGGCGCAATTCGAGTCCTTCTTTTCTCTCGGAAAATGAAACTCCGCCCCTGAATTGTCGGACAATACCGAAAATCTTGTTTTAAACAGAGTTTCACTCCGCCCTCAACGAAAGTCCCCACTGCTTTCTCTCCGTCTGCTTCATCCCCACTGCTTTCTCTCCGTCTCCCAAGCCTTCTTCTGGTCCGTGATGGTTGGGGAGCGTAGAAGAAAAAGGAGAAAAAGCGAACCTGATGGAGAATTTGAGGAGGCTACAGATTAAAAACACGATCGAATTTTGAGATTTGGTATACATCCATGTGTGTGTGCGACATGACATTGTCTTGAAAGAAGTGCAAATCGTACGGATTCCGCA</canonical>
            <polymorphic>AAAAGCCACTATAAAAGGAAAAGGAGGAAATGGGAACAATTTTGAGATGGCGAAAGGAGATGATGCAGGATGAGGAAGAGGTGAAAGTCACGGAAAGTCACGGATAGAAAATAAGGATATATTGATTGACACTCGAGGTGTGAGGTGTCAAAAACTATTGCAAAAAATAATTGAAGAAAATGAGCTTACCTTTTTGATGGCAATGTTGTTATTCAATGTGGAGCTGGACATCTGGGCACGATTCGTGGATTGAGTTAAGCTTCTTCTTGTTTTCGACTCCTCCGAGCTGAGAAAAAAAATTTCAAAATACCAAAAGAGCTCTAATCAAGATTCTTACCTGCTTCTCGCCAGCGACAGAGGTTTCGGTACAGAGCTCACGACGAACGAACCAGATGAGAAGAGAAAGTGGGACGGAGAAGAAAAGAGCGCAGGTGTAAAGAGACAAAATCGAGTAGCGCTTTAGCTCGGTGAACATGAAGGGATAGGTGACACTGTGTTCYCAAGGAAAGAGTGAGAGAGAGAGAGCGATGGAAGCAGCCGGCAGATGAATCGAAGATAAAGCACACAGTCGGACTGCGCTCTAGATGCGACAATAGACCGTCTATTCGATATCGAACACTGTATGAAATGAAGGGGACGACGGGATGAGGCGCAATTCGAGTCCTTCTTTTCTCTCGGAAAATGAAACTCCGCCCCTGAATTGTCGGACAATACCGAAAATCTTGTTTTAAACAGAGTTTCACTCCGCCCTCAACGAAAGTCCCCACTGCTTTCTCTCCGTCTGCTTCATCCCCACTGCTTTCTCTCCGTCTCCCAAGCCTTCTTCTGGTCCGTGATGGTTGGGGAGCGTAGAAGAAAAAGGAGAAAAAGCGAACCTGATGGAGAATTTGAGGAGGCTACAGATTAAAAACACGATCGAATTTTGAGATTTGGTATACATCCATGTGTGTGTGCGACATGACATTGTCTTGAAAGAAGTGCAAATCGTACGGATTCCGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCTCTAATCAAGATTCTTACCTG</pcr_primer_p1>
		<pcr_primer_p2>GTGCTTTATCTTCGATTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGCTCTAATCAAGATTCTTACCTGCTTCTCGCCAGCGACAGAGGTTTCGGTACAGAGCTCACGACGAACGAACCAGATGAGAAGAGAAAGTGGGACGGAGAAGAAAAGAGCGCAGGTGTAAAGAGACAAAATCGAGTAGCGCTTTAGCTCGGTGAACATGAAGGGATAGGTGACACTGTGTTCCCAAGGAAAGAGTGAGAGAGAGAGAGCGATGGAAGCAGCCGGCAGATGAATCGAAGATAAAGCAC</canonical_amplicon>
		<polymorphic_amplicon>AGCTCTAATCAAGATTCTTACCTGCTTCTCGCCAGCGACAGAGGTTTCGGTACAGAGCTCACGACGAACGAACCAGATGAGAAGAGAAAGTGGGACGGAGAAGAAAAGAGCGCAGGTGTAAAGAGACAAAATCGAGTAGCGCTTTAGCTCGGTGAACATGAAGGGATAGGTGACACTGTGTTCYCAAGGAAAGAGTGAGAGAGAGAGAGCGATGGAAGCAGCCGGCAGATGAATCGAAGATAAAGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32195</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>536820</contig_pos>
        <strand>+</strand>
        <context>TTTTAGAAAT[C/T]AAAAAATGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAGACGCAAACATTCACTCAGTGAGAAACAAGCGATGCATTTTAGAAAT</left_flank>
        <right_flank>AAAAAATGTATACTGTGAAATCATAATACACTTGCTTTCACCAGGCTGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGAAATGGGCATAGTAAAAAAGAGAATCCCAACGGAGACAGTTTTCGTTTTGTGTATTCCATAATGAGGAATTCAAAATAAAGTGGTTTCAACGATTCGAAAAAGAGATTAAAGTGACGATCTCTACCACCAACAGCCAATTGCGTAAACGACAACGAACAGGTGAGAATGTTCAACTTCCCATTTAAGCATGATTGATGGGTCGACGAAACATCTGTACCCAATTCGGAAACGAGGAGAAAAATGGGTTGAATTAAAACCGAATTGACATCGCGATGCGTTTTGCCTAATTACTTGAACTTTTTTACCTCGTCATCATCATTAAAAGTTTTGTTGACAGTGTTGAAAAGCTGACATTCAAACTCAGTTTTTCTTTTTTAATCGTTCCCGCGGGAACGGAGAGGGAACAGAGACAATTATTAGGGACAATAATGTAGAAAAAGGGAGTTGAGACGCAAACATTCACTCAGTGAGAAACAAGCGATGCATTTTAGAAATAAAAAAATGTATACTGTGAAATCATAATACACTTGCTTTCACCAGGCTGCTGCAACAAAAAATGAAGTGGTTGTAAGAAAAGCGTGGACAGCAAAAAGTGAATTGGATGAGGAGGAGCTAATGTATTCTGAATGCTCCGGAGCAGTGCGATGCAAAAAGCGTGGAGCAATGTGTGTGGGTGCGGAATGAAAACAAAATTGTGGCACTGGATTGCTATTTTTTCCAAATAAAAAAATTTCAATTTAAAAAAAGCAAAAGTTTTCGAAAGGCAAAAGAGGGAGAGAGAAAGAGAGAAGCGAACAGTTTGAGAATGTTAGAGGTGGTATGTGTGGGACGTTATCAGTGCTGCCGACAGGATTATGAAATGAGAATTGAAATTGAAAAGGCAGCCCCCGGTGAAAGGTGAAAGGAGAGAAACAGTATGTCGAAATTAGTTCCGACTTTTTTACGTGGGAGTTTTTTTTTACCTATTCGAGAAATTTCTAGCTTGACCGGGTGTAC</canonical>
            <polymorphic>AGGAAATGGGCATAGTAAAAAAGAGAATCCCAACGGAGACAGTTTTCGTTTTGTGTATTCCATAATGAGGAATTCAAAATAAAGTGGTTTCAACGATTCGAAAAAGAGATTAAAGTGACGATCTCTACCACCAACAGCCAATTGCGTAAACGACAACGAACAGGTGAGAATGTTCAACTTCCCATTTAAGCATGATTGATGGGTCGACGAAACATCTGTACCCAATTCGGAAACGAGGAGAAAAATGGGTTGAATTAAAACCGAATTGACATCGCGATGCGTTTTGCCTAATTACTTGAACTTTTTTACCTCGTCATCATCATTAAAAGTTTTGTTGACAGTGTTGAAAAGCTGACATTCAAACTCAGTTTTTCTTTTTTAATCGTTCCCGCGGGAACGGAGAGGGAACAGAGACAATTATTAGGGACAATAATGTAGAAAAAGGGAGTTGAGACGCAAACATTCACTCAGTGAGAAACAAGCGATGCATTTTAGAAATYAAAAAATGTATACTGTGAAATCATAATACACTTGCTTTCACCAGGCTGCTGCAACAAAAAATGAAGTGGTTGTAAGAAAAGCGTGGACAGCAAAAAGTGAATTGGATGAGGAGGAGCTAATGTATTCTGAATGCTCCGGAGCAGTGCGATGCAAAAAGCGTGGAGCAATGTGTGTGGGTGCGGAATGAAAACAAAATTGTGGCACTGGATTGCTATTTTTTCCAAATAAAAAAATTTCAATTTAAAAAAAGCAAAAGTTTTCGAAAGGCAAAAGAGGGAGAGAGAAAGAGAGAAGCGAACAGTTTGAGAATGTTAGAGGTGGTATGTGTGGGACGTTATCAGTGCTGCCGACAGGATTATGAAATGAGAATTGAAATTGAAAAGGCAGCCCCCGGTGAAAGGTGAAAGGAGAGAAACAGTATGTCGAAATTAGTTCCGACTTTTTTACGTGGGAGTTTTTTTTTACCTATTCGAGAAATTTCTAGCTTGACCGGGTGTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGTTGACAGTGTTGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTACAACCACTTCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTGTTGACAGTGTTGAAAAGCTGACATTCAAACTCAGTTTTTCTTTTTTAATCGTTCCCGCGGGAACGGAGAGGGAACAGAGACAATTATTAGGGACAATAATGTAGAAAAAGGGAGTTGAGACGCAAACATTCACTCAGTGAGAAACAAGCGATGCATTTTAGAAATAAAAAAATGTATACTGTGAAATCATAATACACTTGCTTTCACCAGGCTGCTGCAACAAAAAATGAAGTGGTTGTAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTGTTGACAGTGTTGAAAAGCTGACATTCAAACTCAGTTTTTCTTTTTTAATCGTTCCCGCGGGAACGGAGAGGGAACAGAGACAATTATTAGGGACAATAATGTAGAAAAAGGGAGTTGAGACGCAAACATTCACTCAGTGAGAAACAAGCGATGCATTTTAGAAATYAAAAAATGTATACTGTGAAATCATAATACACTTGCTTTCACCAGGCTGCTGCAACAAAAAATGAAGTGGTTGTAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32196</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>586025</contig_pos>
        <strand>+</strand>
        <context>TTTATGTTAT[G/T]GTGTTTACGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACAACAAAAAGTTTATCACAAACACTAGGAAACTTTTTGATTTATGTTAT</left_flank>
        <right_flank>GTGTTTACGTTACAGATGTATATTAGATTACGGTAGTTTGTTATATTACG</right_flank>
        <qual_score>130</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCATAGAAAATGTAGAAAAAATAATTGCGGTTTTTTTGAGCTATAGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTTTATCTGTAAAAAACTTCTAAAAATGACCATTTTTGACATTTTTTCTTCCGGAAAAGGACCTAACATGAATCTATAACCACTAATTATTTTTTTAAGAATCATTTGAATCATCTTCAATCTCCACAAAATCAGATAAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGTGCCAAACTTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGCACTGACATTACTTGTGCGGAAGGAGTTTTGACATATTCAGGATTATGGTTCGAAGTTAGACATTTTTTAAATGTATGGAATAAGTGAAAATATTTCTAAGAGCTTTCCCAATTTACAACAAAAAGTTTATCACAAACACTAGGAAACTTTTTGATTTATGTTATTGTGTTTACGTTACAGATGTATATTAGATTACGGTAGTTTGTTATATTACGATAGATTTTCACTGTTTAATTCGGACATCTTCTTGGCGACATATTCAATTTTAACTGTCAACTGCATCTTCATTTTTAACTGTCAAAAACGGAAATGTAAAAAATAAAAGCGTTCTGGAGTTGAAAGGCCTGTCACTAAATTCGAAACCTTTAGTTTTCCCTCATTGTTCTGATAATTTCATGAGGGTTATTAAATCATAGAACTGACTCTATGAGTACTTCATTTTCAGTCTGGAGAATCCGGGAACCACTCGAGTGTTAGCAGAAGTGCAAGCAGAGATTTCAGCCAAAGCGCCAATAGATGCATCAAAAGTTGTATTTCTCGCCGAAGAAGATTCACCAGTCTTGGAACCAAATATTGAAGATCCTCCATCCCCAATTTTGCGAACAGACAACGCAACTAAAGGCAGTAAACCAACCTCATTAAGTGATCAAGATCTGGTCAAACCA</canonical>
            <polymorphic>ATCCATAGAAAATGTAGAAAAAATAATTGCGGTTTTTTTGAGCTATAGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTTTATCTGTAAAAAACTTCTAAAAATGACCATTTTTGACATTTTTTCTTCCGGAAAAGGACCTAACATGAATCTATAACCACTAATTATTTTTTTAAGAATCATTTGAATCATCTTCAATCTCCACAAAATCAGATAAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGTGCCAAACTTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGCACTGACATTACTTGTGCGGAAGGAGTTTTGACATATTCAGGATTATGGTTCGAAGTTAGACATTTTTTAAATGTATGGAATAAGTGAAAATATTTCTAAGAGCTTTCCCAATTTACAACAAAAAGTTTATCACAAACACTAGGAAACTTTTTGATTTATGTTATKGTGTTTACGTTACAGATGTATATTAGATTACGGTAGTTTGTTATATTACGATAGATTTTCACTGTTTAATTCGGACATCTTCTTGGCGACATATTCAATTTTAACTGTCAACTGCATCTTCATTTTTAACTGTCAAAAACGGAAATGTAAAAAATAAAAGCGTTCTGGAGTTGAAAGGCCTGTCACTAAATTCGAAACCTTTAGTTTTCCCTCATTGTTCTGATAATTTCATGAGGGTTATTAAATCATAGAACTGACTCTATGAGTACTTCATTTTCAGTCTGGAGAATCCGGGAACCACTCGAGTGTTAGCAGAAGTGCAAGCAGAGATTTCAGCCAAAGCGCCAATAGATGCATCAAAAGTTGTATTTCTCGCCGAAGAAGATTCACCAGTCTTGGAACCAAATATTGAAGATCCTCCATCCCCAATTTTGCGAACAGACAACGCAACTAAAGGCAGTAAACCAACCTCATTAAGTGATCAAGATCTGGTCAAACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGATTATGGTTCGAAGTTAGAC</pcr_primer_p1>
		<pcr_primer_p2>AAGATGCAGTTGACAGTTAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGGATTATGGTTCGAAGTTAGACATTTTTTAAATGTATGGAATAAGTGAAAATATTTCTAAGAGCTTTCCCAATTTACAACAAAAAGTTTATCACAAACACTAGGAAACTTTTTGATTTATGTTATTGTGTTTACGTTACAGATGTATATTAGATTACGGTAGTTTGTTATATTACGATAGATTTTCACTGTTTAATTCGGACATCTTCTTGGCGACATATTCAATTTTAACTGTCAACTGCATCTT</canonical_amplicon>
		<polymorphic_amplicon>AGGATTATGGTTCGAAGTTAGACATTTTTTAAATGTATGGAATAAGTGAAAATATTTCTAAGAGCTTTCCCAATTTACAACAAAAAGTTTATCACAAACACTAGGAAACTTTTTGATTTATGTTATKGTGTTTACGTTACAGATGTATATTAGATTACGGTAGTTTGTTATATTACGATAGATTTTCACTGTTTAATTCGGACATCTTCTTGGCGACATATTCAATTTTAACTGTCAACTGCATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32197</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>586112</contig_pos>
        <strand>+</strand>
        <context>ATCTTCTTGG[C/G]GACATATTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTGTTATATTACGATAGATTTTCACTGTTTAATTCGGACATCTTCTTGG</left_flank>
        <right_flank>GACATATTCAATTTTAACTGTCAACTGCATCTTCATTTTTAACTGTCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATCTGTAAAAAACTTCTAAAAATGACCATTTTTGACATTTTTTCTTCCGGAAAAGGACCTAACATGAATCTATAACCACTAATTATTTTTTTAAGAATCATTTGAATCATCTTCAATCTCCACAAAATCAGATAAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGTGCCAAACTTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGCACTGACATTACTTGTGCGGAAGGAGTTTTGACATATTCAGGATTATGGTTCGAAGTTAGACATTTTTTAAATGTATGGAATAAGTGAAAATATTTCTAAGAGCTTTCCCAATTTACAACAAAAAGTTTATCACAAACACTAGGAAACTTTTTGATTTATGTTATTGTGTTTACGTTACAGATGTATATTAGATTACGGTAGTTTGTTATATTACGATAGATTTTCACTGTTTAATTCGGACATCTTCTTGGCGACATATTCAATTTTAACTGTCAACTGCATCTTCATTTTTAACTGTCAAAAACGGAAATGTAAAAAATAAAAGCGTTCTGGAGTTGAAAGGCCTGTCACTAAATTCGAAACCTTTAGTTTTCCCTCATTGTTCTGATAATTTCATGAGGGTTATTAAATCATAGAACTGACTCTATGAGTACTTCATTTTCAGTCTGGAGAATCCGGGAACCACTCGAGTGTTAGCAGAAGTGCAAGCAGAGATTTCAGCCAAAGCGCCAATAGATGCATCAAAAGTTGTATTTCTCGCCGAAGAAGATTCACCAGTCTTGGAACCAAATATTGAAGATCCTCCATCCCCAATTTTGCGAACAGACAACGCAACTAAAGGCAGTAAACCAACCTCATTAAGTGATCAAGATCTGGTCAAACCAATTATTCAAGAAACCATTCCACCTAAACAATTAGTGGAAAAAAGTGATAGGGCTGCCGTCGTAGAATTCGATAAAGAGAAGGATGCA</canonical>
            <polymorphic>TTTATCTGTAAAAAACTTCTAAAAATGACCATTTTTGACATTTTTTCTTCCGGAAAAGGACCTAACATGAATCTATAACCACTAATTATTTTTTTAAGAATCATTTGAATCATCTTCAATCTCCACAAAATCAGATAAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGTGCCAAACTTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGCACTGACATTACTTGTGCGGAAGGAGTTTTGACATATTCAGGATTATGGTTCGAAGTTAGACATTTTTTAAATGTATGGAATAAGTGAAAATATTTCTAAGAGCTTTCCCAATTTACAACAAAAAGTTTATCACAAACACTAGGAAACTTTTTGATTTATGTTATTGTGTTTACGTTACAGATGTATATTAGATTACGGTAGTTTGTTATATTACGATAGATTTTCACTGTTTAATTCGGACATCTTCTTGGSGACATATTCAATTTTAACTGTCAACTGCATCTTCATTTTTAACTGTCAAAAACGGAAATGTAAAAAATAAAAGCGTTCTGGAGTTGAAAGGCCTGTCACTAAATTCGAAACCTTTAGTTTTCCCTCATTGTTCTGATAATTTCATGAGGGTTATTAAATCATAGAACTGACTCTATGAGTACTTCATTTTCAGTCTGGAGAATCCGGGAACCACTCGAGTGTTAGCAGAAGTGCAAGCAGAGATTTCAGCCAAAGCGCCAATAGATGCATCAAAAGTTGTATTTCTCGCCGAAGAAGATTCACCAGTCTTGGAACCAAATATTGAAGATCCTCCATCCCCAATTTTGCGAACAGACAACGCAACTAAAGGCAGTAAACCAACCTCATTAAGTGATCAAGATCTGGTCAAACCAATTATTCAAGAAACCATTCCACCTAAACAATTAGTGGAAAAAAGTGATAGGGCTGCCGTCGTAGAATTCGATAAAGAGAAGGATGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTAGGAAACTTTTTGATTTATG</pcr_primer_p1>
		<pcr_primer_p2>AGAACAATGAGGGAAAACTAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACTAGGAAACTTTTTGATTTATGTTATTGTGTTTACGTTACAGATGTATATTAGATTACGGTAGTTTGTTATATTACGATAGATTTTCACTGTTTAATTCGGACATCTTCTTGGCGACATATTCAATTTTAACTGTCAACTGCATCTTCATTTTTAACTGTCAAAAACGGAAATGTAAAAAATAAAAGCGTTCTGGAGTTGAAAGGCCTGTCACTAAATTCGAAACCTTTAGTTTTCCCTCATTGTTCT</canonical_amplicon>
		<polymorphic_amplicon>CACTAGGAAACTTTTTGATTTATGTTATTGTGTTTACGTTACAGATGTATATTAGATTACGGTAGTTTGTTATATTACGATAGATTTTCACTGTTTAATTCGGACATCTTCTTGGSGACATATTCAATTTTAACTGTCAACTGCATCTTCATTTTTAACTGTCAAAAACGGAAATGTAAAAAATAAAAGCGTTCTGGAGTTGAAAGGCCTGTCACTAAATTCGAAACCTTTAGTTTTCCCTCATTGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32198</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>645594</contig_pos>
        <strand>+</strand>
        <context>AAGAGGAGGG[A/G]CACAGTCATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCTTGTAACAATTTGATTTTCAGTTTTTTATTTGGTTGAAAGAGGAGGG</left_flank>
        <right_flank>CACAGTCATTTCTTTGATTTACAAGCTACTGATGATGATGAGGTTTTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGCGGGTTATAGCCTCCTAAAACTTTTCTCGGTGACAAAATGAAAACGGAAAATTACCTGGTAGTTGAACTATATCTGCTAGCTTAGCTGGCTCATATTCTTTCGGTTTGTTACGTTCCTTTGGCGGTGGAGGTGGAGCTCGACGGATTTCTTCATCTTTCTGAATTTTCTATAGCTACAAAAGACATTGGAACTTTATTATCTACCTGAAAAGAGTCTGATAGAAACTTGTAGAAACCATCGTCATCTGAACTTTTCGTATCGGCTAGAACAGTGTTAATCAGCAAAAAACATAAAAATAGCGACCTGGGTTCCATTTCAAACAATGATGATTGCAAGTTTTCTTCTTCTTCTCGATGAAAAGAAATCCTTATCACTTTTCACTTTTTGAGGATCAGATAAAAACAGGATTGACAGGATCTGTTTGGGGTTTGATGTTTTCGATATATCTTGTAACAATTTGATTTTCAGTTTTTTATTTGGTTGAAAGAGGAGGGGCACAGTCATTTCTTTGATTTACAAGCTACTGATGATGATGAGGTTTTGAAAGGTATAAATAATTAAATCATTGGGAAAAATACATCGTTTTTTTATTAGTCAAACGACGGCAGAGCAAGTTTAACGTCGATTCCGAGCAAGAAGCAAGCCACAGTACTTTGAGCCATTCTTCTTTGGAGAATAGCTTTTCCGAATGCTGAGAGATAGGATTCTTTTGAAGATCTTGGTTCCATATCCATCAAGTATACAGTAATGAACATAGAAATCTGAAAATAATTCTGGTGAAATCAACTATATCTTCCAAACTAACAGGTCTCTTCTCAAGAATATTGTTTTGAATCTCTGGTGGAATGTAATCCTTGAAGTCGTCCATTTCTGGTGTGCACATCTCGGTTTCAATGTCGTAAAGGCCTGGTTGCATATCACCACATCTGAAACCGAACTTGTTTTTTTTTTGGCCACACCTTGTCTCTTAACGTTTCTATCTTTGTACGAGACAA</canonical>
            <polymorphic>GAAGCGGGTTATAGCCTCCTAAAACTTTTCTCGGTGACAAAATGAAAACGGAAAATTACCTGGTAGTTGAACTATATCTGCTAGCTTAGCTGGCTCATATTCTTTCGGTTTGTTACGTTCCTTTGGCGGTGGAGGTGGAGCTCGACGGATTTCTTCATCTTTCTGAATTTTCTATAGCTACAAAAGACATTGGAACTTTATTATCTACCTGAAAAGAGTCTGATAGAAACTTGTAGAAACCATCGTCATCTGAACTTTTCGTATCGGCTAGAACAGTGTTAATCAGCAAAAAACATAAAAATAGCGACCTGGGTTCCATTTCAAACAATGATGATTGCAAGTTTTCTTCTTCTTCTCGATGAAAAGAAATCCTTATCACTTTTCACTTTTTGAGGATCAGATAAAAACAGGATTGACAGGATCTGTTTGGGGTTTGATGTTTTCGATATATCTTGTAACAATTTGATTTTCAGTTTTTTATTTGGTTGAAAGAGGAGGGRCACAGTCATTTCTTTGATTTACAAGCTACTGATGATGATGAGGTTTTGAAAGGTATAAATAATTAAATCATTGGGAAAAATACATCGTTTTTTTATTAGTCAAACGACGGCAGAGCAAGTTTAACGTCGATTCCGAGCAAGAAGCAAGCCACAGTACTTTGAGCCATTCTTCTTTGGAGAATAGCTTTTCCGAATGCTGAGAGATAGGATTCTTTTGAAGATCTTGGTTCCATATCCATCAAGTATACAGTAATGAACATAGAAATCTGAAAATAATTCTGGTGAAATCAACTATATCTTCCAAACTAACAGGTCTCTTCTCAAGAATATTGTTTTGAATCTCTGGTGGAATGTAATCCTTGAAGTCGTCCATTTCTGGTGTGCACATCTCGGTTTCAATGTCGTAAAGGCCTGGTTGCATATCACCACATCTGAAACCGAACTTGTTTTTTTTTTGGCCACACCTTGTCTCTTAACGTTTCTATCTTTGTACGAGACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>502 383 115</canonical_bands>
                <polymorphic_bands>885 115</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>383 360 142 115</canonical_bands>
                <polymorphic_bands>743 142 115</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCACTTTTTGAGGATCAGATAAA</pcr_primer_p1>
		<pcr_primer_p2>AATCGACGTTAAACTTGCTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCACTTTTTGAGGATCAGATAAAAACAGGATTGACAGGATCTGTTTGGGGTTTGATGTTTTCGATATATCTTGTAACAATTTGATTTTCAGTTTTTTATTTGGTTGAAAGAGGAGGGGCACAGTCATTTCTTTGATTTACAAGCTACTGATGATGATGAGGTTTTGAAAGGTATAAATAATTAAATCATTGGGAAAAATACATCGTTTTTTTATTAGTCAAACGACGGCAGAGCAAGTTTAACGTCGATT</canonical_amplicon>
		<polymorphic_amplicon>TCACTTTTTGAGGATCAGATAAAAACAGGATTGACAGGATCTGTTTGGGGTTTGATGTTTTCGATATATCTTGTAACAATTTGATTTTCAGTTTTTTATTTGGTTGAAAGAGGAGGGRCACAGTCATTTCTTTGATTTACAAGCTACTGATGATGATGAGGTTTTGAAAGGTATAAATAATTAAATCATTGGGAAAAATACATCGTTTTTTTATTAGTCAAACGACGGCAGAGCAAGTTTAACGTCGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32199</snp_id>
        <super_contig>c007201007.Contig1</super_contig>
        <contig_pos>646041</contig_pos>
        <strand>+</strand>
        <context>ACCGAACTTG[C/T]TTTTTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATGTCGTAAAGGCCTGGTTGCATATCACCACATCTGAAACCGAACTTG</left_flank>
        <right_flank>TTTTTTTTTGGCCACACCTTGTCTCTTAACGTTTCTATCTTTGTACGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATCTTGTAACAATTTGATTTTCAGTTTTTTATTTGGTTGAAAGAGGAGGGGCACAGTCATTTCTTTGATTTACAAGCTACTGATGATGATGAGGTTTTGAAAGGTATAAATAATTAAATCATTGGGAAAAATACATCGTTTTTTTATTAGTCAAACGACGGCAGAGCAAGTTTAACGTCGATTCCGAGCAAGAAGCAAGCCACAGTACTTTGAGCCATTCTTCTTTGGAGAATAGCTTTTCCGAATGCTGAGAGATAGGATTCTTTTGAAGATCTTGGTTCCATATCCATCAAGTATACAGTAATGAACATAGAAATCTGAAAATAATTCTGGTGAAATCAACTATATCTTCCAAACTAACAGGTCTCTTCTCAAGAATATTGTTTTGAATCTCTGGTGGAATGTAATCCTTGAAGTCGTCCATTTCTGGTGTGCACATCTCGGTTTCAATGTCGTAAAGGCCTGGTTGCATATCACCACATCTGAAACCGAACTTGTTTTTTTTTTGGCCACACCTTGTCTCTTAACGTTTCTATCTTTGTACGAGACAAAATAACAATCCCCCAAACAAGATTTAAAAAAAACGAATACAAGTACATCCGAACCCGTTTTGCAGTAGCAATTAGCAAAATGGAAATAGCGCGGAACGTGTACTTTTTGACATAATTGACTGGCAGGAGGGCAAGTGAAAACACATCACAACACATACTTGCAATCCTCATCGATCAATTTGTGTTCGGGTCTGCTTAATTTGCTGGCTGTGATTTTGGATGATTGGGCTTTGAGTTGTTTGCAGAAGTCACAGAAGACGCTGAAGAAATTTGAGCAGGATAAAAATGATAGGAATATTTCGATTACCAAGATCCCTCTAATTTGGCACATGGACACTGGTTAACCTTCTCGTCAATTTTTTTCGAGCATGGAAGAGATGGATTGTTTGGGTCTGGAGTGCCACCGATTCTCATCTCAACTTCAGCGATCAGATTTTTGGTTGGCTT</canonical>
            <polymorphic>ATATCTTGTAACAATTTGATTTTCAGTTTTTTATTTGGTTGAAAGAGGAGGGGCACAGTCATTTCTTTGATTTACAAGCTACTGATGATGATGAGGTTTTGAAAGGTATAAATAATTAAATCATTGGGAAAAATACATCGTTTTTTTATTAGTCAAACGACGGCAGAGCAAGTTTAACGTCGATTCCGAGCAAGAAGCAAGCCACAGTACTTTGAGCCATTCTTCTTTGGAGAATAGCTTTTCCGAATGCTGAGAGATAGGATTCTTTTGAAGATCTTGGTTCCATATCCATCAAGTATACAGTAATGAACATAGAAATCTGAAAATAATTCTGGTGAAATCAACTATATCTTCCAAACTAACAGGTCTCTTCTCAAGAATATTGTTTTGAATCTCTGGTGGAATGTAATCCTTGAAGTCGTCCATTTCTGGTGTGCACATCTCGGTTTCAATGTCGTAAAGGCCTGGTTGCATATCACCACATCTGAAACCGAACTTGYTTTTTTTTTGGCCACACCTTGTCTCTTAACGTTTCTATCTTTGTACGAGACAAAATAACAATCCCCCAAACAAGATTTAAAAAAAACGAATACAAGTACATCCGAACCCGTTTTGCAGTAGCAATTAGCAAAATGGAAATAGCGCGGAACGTGTACTTTTTGACATAATTGACTGGCAGGAGGGCAAGTGAAAACACATCACAACACATACTTGCAATCCTCATCGATCAATTTGTGTTCGGGTCTGCTTAATTTGCTGGCTGTGATTTTGGATGATTGGGCTTTGAGTTGTTTGCAGAAGTCACAGAAGACGCTGAAGAAATTTGAGCAGGATAAAAATGATAGGAATATTTCGATTACCAAGATCCCTCTAATTTGGCACATGGACACTGGTTAACCTTCTCGTCAATTTTTTTCGAGCATGGAAGAGATGGATTGTTTGGGTCTGGAGTGCCACCGATTCTCATCTCAACTTCAGCGATCAGATTTTTGGTTGGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCTGAAAATAATTCTGGTGA</pcr_primer_p1>
		<pcr_primer_p2>GGATTGTTATTTTGTCTCGTACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATCTGAAAATAATTCTGGTGAAATCAACTATATCTTCCAAACTAACAGGTCTCTTCTCAAGAATATTGTTTTGAATCTCTGGTGGAATGTAATCCTTGAAGTCGTCCATTTCTGGTGTGCACATCTCGGTTTCAATGTCGTAAAGGCCTGGTTGCATATCACCACATCTGAAACCGAACTTGTTTTTTTTTTGGCCACACCTTGTCTCTTAACGTTTCTATCTTTGTACGAGACAAAATAACAATCC</canonical_amplicon>
		<polymorphic_amplicon>AAATCTGAAAATAATTCTGGTGAAATCAACTATATCTTCCAAACTAACAGGTCTCTTCTCAAGAATATTGTTTTGAATCTCTGGTGGAATGTAATCCTTGAAGTCGTCCATTTCTGGTGTGCACATCTCGGTTTCAATGTCGTAAAGGCCTGGTTGCATATCACCACATCTGAAACCGAACTTGYTTTTTTTTTGGCCACACCTTGTCTCTTAACGTTTCTATCTTTGTACGAGACAAAATAACAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32200</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>39716</contig_pos>
        <strand></strand>
        <context>AAAACTTTCA[G/A]GGATTCAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTGAAACTTTGAAGTTACGAAATTCCAGTAATTCGGAATTAAAACTTTCA</left_flank>
        <right_flank>GGATTCAGAAGAGCATTAAAGATTTTTTAAAAGAAATCCCGAAATTCGAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAATAGATCTGAAAGTATATTTCTTGGATTTTTGGCACTGTGGAGTTTTGAAATTTCTGAAGTTTAAAAATTTCTAAAATTTGGAATTTTTCGAAGTCAGAAAGTTGAAAATTTCAAAGCTTCATGTTTTAAAAAATCCATTTTCTCCAGATTCTTGAAGCTTCCGAATTTAACCGACGTTTTTGAACTGTCAACTTTTATACATAGTTTCCAACCACTGATTCCAAAAAAATAACCAAACTAGACTCACCAAAACTGCTCCAATAATAAAAAAGCCCGAAATAGCGACACCTGTCGTAAAGTTCATAATCTCGCAAGTGGCGAGACAGGATAATGAAAAACATGTCAGGTGGGTTAAAAATAAAAGTGTTATGCAAATGTAGGCACGCGGCTTCTTTTCGTAGTCTCTGGAAAGGCATTAATGTATTGGAAAATTCTGGAAAAACTCTGAAACTTTGAAGTTACGAAATTCCAGTAATTCGGAATTAAAACTTTCAGGGATTCAGAAGAGCATTAAAGATTTTTTAAAAGAAATCCCGAAATTCGAAATTCCAAAACTAAAACTTTAGGAACTTAGAACAGCTTCAACATAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTCA</canonical>
            <polymorphic>TAAAATAGATCTGAAAGTATATTTCTTGGATTTTTGGCACTGTGGAGTTTTGAAATTTCTGAAGTTTAAAAATTTCTAAAATTTGGAATTTTTCGAAGTCAGAAAGTTGAAAATTTCAAAGCTTCATGTTTTAAAAAATCCATTTTCTCCAGATTCTTGAAGCTTCCGAATTTAACCGACGTTTTTGAACTGTCAACTTTTATACATAGTTTCCAACCACTGATTCCAAAAAAATAACCAAACTAGACTCACCAAAACTGCTCCAATAATAAAAAAGCCCGAAATAGCGACACCTGTCGTAAAGTTCATAATCTCGCAAGTGGCGAGACAGGATAATGAAAAACATGTCAGGTGGGTTAAAAATAAAAGTGTTATGCAAATGTAGGCACGCGGCTTCTTTTCGTAGTCTCTGGAAAGGCATTAATGTATTGGAAAATTCTGGAAAAACTCTGAAACTTTGAAGTTACGAAATTCCAGTAATTCGGAATTAAAACTTTCARGGATTCAGAAGAGCATTAAAGATTTTTTAAAAGAAATCCCGAAATTCGAAATTCCAAAACTAAAACTTTAGGAACTTAGAACAGCTTCAACATAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAAACTCTGAAACTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>AGAGCATGTGCAACATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>793</pcr_amplicon_size>
		<canonical_amplicon>GGAAAAACTCTGAAACTTTGAAGTTACGAAATTCCAGTAATTCGGAATTAAAACTTTCAGGGATTCAGAAGAGCATTAA</canonical_amplicon>
		<polymorphic_amplicon>GGAAAAACTCTGAAACTTTGAAGTTACGAAATTCCAGTAATTCGGAATTAAAACTTTCARGGATTCAGAAGAGCATTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32201</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>39745</contig_pos>
        <strand></strand>
        <context>AAGATTTTTT[A/T]AAAGAAATCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTCGGAATTAAAACTTTCAGGGATTCAGAAGAGCATTAAAGATTTTTT</left_flank>
        <right_flank>AAAGAAATCCCGAAATTCGAAATTCCAAAACTAAAACTTTAGGAACTTAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTGGCACTGTGGAGTTTTGAAATTTCTGAAGTTTAAAAATTTCTAAAATTTGGAATTTTTCGAAGTCAGAAAGTTGAAAATTTCAAAGCTTCATGTTTTAAAAAATCCATTTTCTCCAGATTCTTGAAGCTTCCGAATTTAACCGACGTTTTTGAACTGTCAACTTTTATACATAGTTTCCAACCACTGATTCCAAAAAAATAACCAAACTAGACTCACCAAAACTGCTCCAATAATAAAAAAGCCCGAAATAGCGACACCTGTCGTAAAGTTCATAATCTCGCAAGTGGCGAGACAGGATAATGAAAAACATGTCAGGTGGGTTAAAAATAAAAGTGTTATGCAAATGTAGGCACGCGGCTTCTTTTCGTAGTCTCTGGAAAGGCATTAATGTATTGGAAAATTCTGGAAAAACTCTGAAACTTTGAAGTTACGAAATTCCAGTAATTCGGAATTAAAACTTTCAGGGATTCAGAAGAGCATTAAAGATTTTTTAAAAGAAATCCCGAAATTCGAAATTCCAAAACTAAAACTTTAGGAACTTAGAACAGCTTCAACATAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATT</canonical>
            <polymorphic>ATTTTTGGCACTGTGGAGTTTTGAAATTTCTGAAGTTTAAAAATTTCTAAAATTTGGAATTTTTCGAAGTCAGAAAGTTGAAAATTTCAAAGCTTCATGTTTTAAAAAATCCATTTTCTCCAGATTCTTGAAGCTTCCGAATTTAACCGACGTTTTTGAACTGTCAACTTTTATACATAGTTTCCAACCACTGATTCCAAAAAAATAACCAAACTAGACTCACCAAAACTGCTCCAATAATAAAAAAGCCCGAAATAGCGACACCTGTCGTAAAGTTCATAATCTCGCAAGTGGCGAGACAGGATAATGAAAAACATGTCAGGTGGGTTAAAAATAAAAGTGTTATGCAAATGTAGGCACGCGGCTTCTTTTCGTAGTCTCTGGAAAGGCATTAATGTATTGGAAAATTCTGGAAAAACTCTGAAACTTTGAAGTTACGAAATTCCAGTAATTCGGAATTAAAACTTTCAGGGATTCAGAAGAGCATTAAAGATTTTTTWAAAGAAATCCCGAAATTCGAAATTCCAAAACTAAAACTTTAGGAACTTAGAACAGCTTCAACATAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 396 65 38</canonical_bands>
                <polymorphic_bands>897 65 38</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 185 67 65 64 41 37 28 11</canonical_bands>
                <polymorphic_bands>513 185 67 65 64 41 37 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAAACTTTGAAGTTACGAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGAGCATGTGCAACATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>784</pcr_amplicon_size>
		<canonical_amplicon>CTGAAACTTTGAAGTTACGAAATTCCAGTAATTCGGAATTAAAACTTTCAGGGATTCAGAAGAGCATTAAAGATTTTTTAAAAGAAATCCCGAAATTCG</canonical_amplicon>
		<polymorphic_amplicon>CTGAAACTTTGAAGTTACGAAATTCCAGTAATTCGGAATTAAAACTTTCAGGGATTCAGAAGAGCATTAAAGATTTTTTWAAAGAAATCCCGAAATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32202</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>39782</contig_pos>
        <strand></strand>
        <context>aaaactaaaa[C/T]ttwaggaact</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAAGATTTTTTAAAAGAAATCCCGAAATTCGAAATTCCAAAACTAAAA</left_flank>
        <right_flank>TTTAGGAACTTAGAACAGCTTCAACATAATCTCAGAATCTCAGAATCTCA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAAATTTCTAAAATTTGGAATTTTTCGAAGTCAGAAAGTTGAAAATTTCAAAGCTTCATGTTTTAAAAAATCCATTTTCTCCAGATTCTTGAAGCTTCCGAATTTAACCGACGTTTTTGAACTGTCAACTTTTATACATAGTTTCCAACCACTGATTCCAAAAAAATAACCAAACTAGACTCACCAAAACTGCTCCAATAATAAAAAAGCCCGAAATAGCGACACCTGTCGTAAAGTTCATAATCTCGCAAGTGGCGAGACAGGATAATGAAAAACATGTCAGGTGGGTTAAAAATAAAAGTGTTATGCAAATGTAGGCACGCGGCTTCTTTTCGTAGTCTCTGGAAAGGCATTAATGTATTGGAAAATTCTGGAAAAACTCTGAAACTTTGAAGTTACGAAATTCCAGTAATTCGGAATTAAAACTTTCAGGGATTCAGAAGAGCATTAAAGATTTTTTAAAAGAAATCCCGAAATTCGAAATTCCAAAACTAAAACTTTAGGAACTTAGAACAGCTTCAACATAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGA</canonical>
            <polymorphic>TAAAAATTTCTAAAATTTGGAATTTTTCGAAGTCAGAAAGTTGAAAATTTCAAAGCTTCATGTTTTAAAAAATCCATTTTCTCCAGATTCTTGAAGCTTCCGAATTTAACCGACGTTTTTGAACTGTCAACTTTTATACATAGTTTCCAACCACTGATTCCAAAAAAATAACCAAACTAGACTCACCAAAACTGCTCCAATAATAAAAAAGCCCGAAATAGCGACACCTGTCGTAAAGTTCATAATCTCGCAAGTGGCGAGACAGGATAATGAAAAACATGTCAGGTGGGTTAAAAATAAAAGTGTTATGCAAATGTAGGCACGCGGCTTCTTTTCGTAGTCTCTGGAAAGGCATTAATGTATTGGAAAATTCTGGAAAAACTCTGAAACTTTGAAGTTACGAAATTCCAGTAATTCGGAATTAAAACTTTCAGGGATTCAGAAGAGCATTAAAGATTTTTTAAAAGAAATCCCGAAATTCGAAATTCCAAAACTAAAAYTTTAGGAACTTAGAACAGCTTCAACATAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTCAGAAGAGCATTAAAGA</pcr_primer_p1>
		<pcr_primer_p2>AGAGCATGTGCAACATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>733</pcr_amplicon_size>
		<canonical_amplicon>GGATTCAGAAGAGCATTAAAGATTTTTTAAAAGAAATCCCGAAATTCGAAATTCCAAAACTAAAACTTTAGGAACTTAGAACAGC</canonical_amplicon>
		<polymorphic_amplicon>GGATTCAGAAGAGCATTAAAGATTTTTTAAAAGAAATCCCGAAATTCGAAATTCCAAAACTAAAAYTTTAGGAACTTAGAACAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32203</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>39785</contig_pos>
        <strand></strand>
        <context>actaaaaytt[T/A]aggaacttag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAGATTTTTTAAAAGAAATCCCGAAATTCGAAATTCCAAAACTAAAACTT</left_flank>
        <right_flank>AGGAACTTAGAACAGCTTCAACATAATCTCAGAATCTCAGAATCTCAGAA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTCTAAAATTTGGAATTTTTCGAAGTCAGAAAGTTGAAAATTTCAAAGCTTCATGTTTTAAAAAATCCATTTTCTCCAGATTCTTGAAGCTTCCGAATTTAACCGACGTTTTTGAACTGTCAACTTTTATACATAGTTTCCAACCACTGATTCCAAAAAAATAACCAAACTAGACTCACCAAAACTGCTCCAATAATAAAAAAGCCCGAAATAGCGACACCTGTCGTAAAGTTCATAATCTCGCAAGTGGCGAGACAGGATAATGAAAAACATGTCAGGTGGGTTAAAAATAAAAGTGTTATGCAAATGTAGGCACGCGGCTTCTTTTCGTAGTCTCTGGAAAGGCATTAATGTATTGGAAAATTCTGGAAAAACTCTGAAACTTTGAAGTTACGAAATTCCAGTAATTCGGAATTAAAACTTTCAGGGATTCAGAAGAGCATTAAAGATTTTTTAAAAGAAATCCCGAAATTCGAAATTCCAAAACTAAAACTTTAGGAACTTAGAACAGCTTCAACATAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATC</canonical>
            <polymorphic>AAATTTCTAAAATTTGGAATTTTTCGAAGTCAGAAAGTTGAAAATTTCAAAGCTTCATGTTTTAAAAAATCCATTTTCTCCAGATTCTTGAAGCTTCCGAATTTAACCGACGTTTTTGAACTGTCAACTTTTATACATAGTTTCCAACCACTGATTCCAAAAAAATAACCAAACTAGACTCACCAAAACTGCTCCAATAATAAAAAAGCCCGAAATAGCGACACCTGTCGTAAAGTTCATAATCTCGCAAGTGGCGAGACAGGATAATGAAAAACATGTCAGGTGGGTTAAAAATAAAAGTGTTATGCAAATGTAGGCACGCGGCTTCTTTTCGTAGTCTCTGGAAAGGCATTAATGTATTGGAAAATTCTGGAAAAACTCTGAAACTTTGAAGTTACGAAATTCCAGTAATTCGGAATTAAAACTTTCAGGGATTCAGAAGAGCATTAAAGATTTTTTAAAAGAAATCCCGAAATTCGAAATTCCAAAACTAAAACTTWAGGAACTTAGAACAGCTTCAACATAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTCAGAAGAGCATTAAAGA</pcr_primer_p1>
		<pcr_primer_p2>AGAGCATGTGCAACATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>733</pcr_amplicon_size>
		<canonical_amplicon>GGATTCAGAAGAGCATTAAAGATTTTTTAAAAGAAATCCCGAAATTCGAAATTCCAAAACTAAAACTTTAGGAACTTAGAACAGCTTC</canonical_amplicon>
		<polymorphic_amplicon>GGATTCAGAAGAGCATTAAAGATTTTTTAAAAGAAATCCCGAAATTCGAAATTCCAAAACTAAAACTTWAGGAACTTAGAACAGCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32204</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>39909</contig_pos>
        <strand></strand>
        <context>atctcagaat[T/C]tcagaatctc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAAT</left_flank>
        <right_flank>TCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTC</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACTTTTATACATAGTTTCCAACCACTGATTCCAAAAAAATAACCAAACTAGACTCACCAAAACTGCTCCAATAATAAAAAAGCCCGAAATAGCGACACCTGTCGTAAAGTTCATAATCTCGCAAGTGGCGAGACAGGATAATGAAAAACATGTCAGGTGGGTTAAAAATAAAAGTGTTATGCAAATGTAGGCACGCGGCTTCTTTTCGTAGTCTCTGGAAAGGCATTAATGTATTGGAAAATTCTGGAAAAACTCTGAAACTTTGAAGTTACGAAATTCCAGTAATTCGGAATTAAAACTTTCAGGGATTCAGAAGAGCATTAAAGATTTTTTAAAAGAAATCCCGAAATTCGAAATTCCAAAACTAAAACTTTAGGAACTTAGAACAGCTTCAACATAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCGGAACCTCAGAATTTCAGAATCTCAGAATTATTTTTCTTCCAGAGTTTCAGAACGAAT</canonical>
            <polymorphic>CAACTTTTATACATAGTTTCCAACCACTGATTCCAAAAAAATAACCAAACTAGACTCACCAAAACTGCTCCAATAATAAAAAAGCCCGAAATAGCGACACCTGTCGTAAAGTTCATAATCTCGCAAGTGGCGAGACAGGATAATGAAAAACATGTCAGGTGGGTTAAAAATAAAAGTGTTATGCAAATGTAGGCACGCGGCTTCTTTTCGTAGTCTCTGGAAAGGCATTAATGTATTGGAAAATTCTGGAAAAACTCTGAAACTTTGAAGTTACGAAATTCCAGTAATTCGGAATTAAAACTTTCAGGGATTCAGAAGAGCATTAAAGATTTTTTAAAAGAAATCCCGAAATTCGAAATTCCAAAACTAAAACTTTAGGAACTTAGAACAGCTTCAACATAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATYTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCGGAACCTCAGAATTTCAGAATCTCAGAATTATTTTTCTTCCAGAGTTTCAGAACGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>241 140 73 72 72 64 64 56 56 48 35 32 32 8 7</canonical_bands>
                <polymorphic_bands>241 204 73 72 72 64 56 56 48 35 32 32 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>241 140 72 72 64 64 57 56 56 35 32 32 32 16 9 8 7 7</canonical_bands>
                <polymorphic_bands>241 204 72 72 64 57 56 56 35 32 32 32 16 9 8 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTCAGAAGAGCATTAAAGA</pcr_primer_p1>
		<pcr_primer_p2>AGAGCATGTGCAACATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>733</pcr_amplicon_size>
		<canonical_amplicon>GGATTCAGAAGAGCATTAAAGATTTTTTAAAAGAAATCCCGAAATTCGAAATTCCAAAACTAAAACTTTAGGAACTTAGAACAGCTTCAACATAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCA</canonical_amplicon>
		<polymorphic_amplicon>GGATTCAGAAGAGCATTAAAGATTTTTTAAAAGAAATCCCGAAATTCGAAATTCCAAAACTAAAACTTTAGGAACTTAGAACAGCTTCAACATAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATYTCAGAATCTCAGAATCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32205</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>39973</contig_pos>
        <strand></strand>
        <context>atctcagaat[T/C]tcagaatctc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAAT</left_flank>
        <right_flank>TCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTC</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGCTCCAATAATAAAAAAGCCCGAAATAGCGACACCTGTCGTAAAGTTCATAATCTCGCAAGTGGCGAGACAGGATAATGAAAAACATGTCAGGTGGGTTAAAAATAAAAGTGTTATGCAAATGTAGGCACGCGGCTTCTTTTCGTAGTCTCTGGAAAGGCATTAATGTATTGGAAAATTCTGGAAAAACTCTGAAACTTTGAAGTTACGAAATTCCAGTAATTCGGAATTAAAACTTTCAGGGATTCAGAAGAGCATTAAAGATTTTTTAAAAGAAATCCCGAAATTCGAAATTCCAAAACTAAAACTTTAGGAACTTAGAACAGCTTCAACATAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCGGAACCTCAGAATTTCAGAATCTCAGAATTATTTTTCTTCCAGAGTTTCAGAACGAATTTTTCCAAACTCACTTGATAAAAAATGTTGCACATGCTCTTTCGCAAGTCAGAATAAAAACACT</canonical>
            <polymorphic>CTGCTCCAATAATAAAAAAGCCCGAAATAGCGACACCTGTCGTAAAGTTCATAATCTCGCAAGTGGCGAGACAGGATAATGAAAAACATGTCAGGTGGGTTAAAAATAAAAGTGTTATGCAAATGTAGGCACGCGGCTTCTTTTCGTAGTCTCTGGAAAGGCATTAATGTATTGGAAAATTCTGGAAAAACTCTGAAACTTTGAAGTTACGAAATTCCAGTAATTCGGAATTAAAACTTTCAGGGATTCAGAAGAGCATTAAAGATTTTTTAAAAGAAATCCCGAAATTCGAAATTCCAAAACTAAAACTTTAGGAACTTAGAACAGCTTCAACATAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATYTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCGGAACCTCAGAATTTCAGAATCTCAGAATTATTTTTCTTCCAGAGTTTCAGAACGAATTTTTCCAAACTCACTTGATAAAAAATGTTGCACATGCTCTTTCGCAAGTCAGAATAAAAACACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>177 140 73 72 72 67 64 64 56 56 45 35 32 32 8 7</canonical_bands>
                <polymorphic_bands>204 177 73 72 72 67 64 56 56 45 35 32 32 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>177 140 72 72 67 64 64 57 56 56 35 32 32 29 16 9 8 7 7</canonical_bands>
                <polymorphic_bands>204 177 72 72 67 64 57 56 56 35 32 32 29 16 9 8 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTCAGAAGAGCATTAAAGA</pcr_primer_p1>
		<pcr_primer_p2>AGAGCATGTGCAACATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>733</pcr_amplicon_size>
		<canonical_amplicon>GGATTCAGAAGAGCATTAAAGATTTTTTAAAAGAAATCCCGAAATTCGAAATTCCAAAACTAAAACTTTAGGAACTTAGAACAGCTTCAACATAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATYTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCGGAACCTCAGAATTTCAGAATCTCAGAATTATTTTTCTTCCAGAGTTTCAGAACGAATTTTTCCAAACTCACTTGATAAAAAATGTTGCACATGCTCT</canonical_amplicon>
		<polymorphic_amplicon>GGATTCAGAAGAGCATTAAAGATTTTTTAAAAGAAATCCCGAAATTCGAAATTCCAAAACTAAAACTTTAGGAACTTAGAACAGCTTCAACATAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATYTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCGGAACCTCAGAATTTCAGAATCTCAGAATTATTTTTCTTCCAGAGTTTCAGAACGAATTTTTCCAAACTCACTTGATAAAAAATGTTGCACATGCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32206</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>40025</contig_pos>
        <strand></strand>
        <context>cagaatctca[G/A]aatctcagaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCA</left_flank>
        <right_flank>AATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCTCGCAAGTGGCGAGACAGGATAATGAAAAACATGTCAGGTGGGTTAAAAATAAAAGTGTTATGCAAATGTAGGCACGCGGCTTCTTTTCGTAGTCTCTGGAAAGGCATTAATGTATTGGAAAATTCTGGAAAAACTCTGAAACTTTGAAGTTACGAAATTCCAGTAATTCGGAATTAAAACTTTCAGGGATTCAGAAGAGCATTAAAGATTTTTTAAAAGAAATCCCGAAATTCGAAATTCCAAAACTAAAACTTTAGGAACTTAGAACAGCTTCAACATAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCGGAACCTCAGAATTTCAGAATCTCAGAATTATTTTTCTTCCAGAGTTTCAGAACGAATTTTTCCAAACTCACTTGATAAAAAATGTTGCACATGCTCTTTCGCAAGTCAGAATAAAAACACTAAAAGTCAATGTGAACGCATAATGTAGAAATAAAATTCCACTGATAAATAAC</canonical>
            <polymorphic>AATCTCGCAAGTGGCGAGACAGGATAATGAAAAACATGTCAGGTGGGTTAAAAATAAAAGTGTTATGCAAATGTAGGCACGCGGCTTCTTTTCGTAGTCTCTGGAAAGGCATTAATGTATTGGAAAATTCTGGAAAAACTCTGAAACTTTGAAGTTACGAAATTCCAGTAATTCGGAATTAAAACTTTCAGGGATTCAGAAGAGCATTAAAGATTTTTTAAAAGAAATCCCGAAATTCGAAATTCCAAAACTAAAACTTTAGGAACTTAGAACAGCTTCAACATAATCTCAGAATCTCARAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCGGAACCTCAGAATTTCAGAATCTCAGAATTATTTTTCTTCCAGAGTTTCAGAACGAATTTTTCCAAACTCACTTGATAAAAAATGTTGCACATGCTCTTTCGCAAGTCAGAATAAAAACACTAAAAGTCAATGTGAACGCATAATGTAGAAATAAAATTCCACTGATAAATAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>266 152 24 22 16 16 16 16 16 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>266 152 24 22 16 16 16 16 16 16 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>193 156 99 24 24 16 16 16 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>193 156 99 24 24 16 16 16 16 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>142 93 65 59 33 25 23 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>142 93 65 59 33 25 23 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>193 156 99 24 24 16 16 16 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>193 156 99 24 24 16 16 16 16 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTCAGAAGAGCATTAAAGA</pcr_primer_p1>
		<pcr_primer_p2>AGAGCATGTGCAACATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>733</pcr_amplicon_size>
		<canonical_amplicon>GGATTCAGAAGAGCATTAAAGATTTTTTAAAAGAAATCCCGAAATTCGAAATTCCAAAACTAAAACTTTAGGAACTTAGAACAGCTTCAACATAATCTCAGAATCTCARAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCGGAACCTCAGAATTTCAGAATCTCAGAATTATTTTTCTTCCAGAGTTTCAGAACGAATTTTTCCAAACTCACTTGATAAAAAATGTTGCACATGCTCT</canonical_amplicon>
		<polymorphic_amplicon>GGATTCAGAAGAGCATTAAAGATTTTTTAAAAGAAATCCCGAAATTCGAAATTCCAAAACTAAAACTTTAGGAACTTAGAACAGCTTCAACATAATCTCAGAATCTCARAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCGGAACCTCAGAATTTCAGAATCTCAGAATTATTTTTCTTCCAGAGTTTCAGAACGAATTTTTCCAAACTCACTTGATAAAAAATGTTGCACATGCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32207</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>44745</contig_pos>
        <strand>+</strand>
        <context>AAATTTTCTG[C/G]AAAAAAATGT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCGAACGAAACAACATAATAATAAGGAAGTTAAACATTCGAAATTTTCTG</left_flank>
        <right_flank>AAAAAAATGTGAAATTTGATTATCACCTTGGAAAAGGTGGACTAGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGCCGTTTTTCGGGAATTTCGGATTTTTTTTTTGAATTGTTTCGCAATAATATTCGAAAAATAGATAACTTTCAACACATTTTAATGCAATAAAAATTTTTGGTCGGAGTGCCTCTTTAAGATTTCTGGAATTTGAGAATGTCTGCATTCCTCACTTTCCCAGTTTTTTGGGGAATTTTTAACATTTGAAAGATGTGAAAAGTCTGAATATTCAAAAACCAAAGCTATGATAAAAAACAAGGAACCAAAGAGCTCATTAAATATGTTTCGAACATTTCAAGCGTAAAGAAAAGTCTGGTCTATCCATTTGAAACAGAAGATAAGCTGACTAACTCAAAAATCGCTGTCTTGTTGTTCTGACTTGAAAAGAAAATGTGAAATTCGTCATTATTTGATTCAAAAAAATTCGAACGAAACAACATAATAATAAGGAAGTTAAACATTCGAAATTTTCTGAAAAAAAATGTGAAATTTGATTATCACCTTGGAAAAGGTGGACTAGAAAAAAGTTTGGACAGAGACTTTATTATAAAACTGAGAAATTCGGAAACTCGAGTAAATTGAAAAAATATTCAAAAAGTCAGAAATTCAAAAATTCGATTTCAAAAATGTGCACATTCTGGAATTTCTGAATTTCGAAATTTCAAAAAAAAATAGAAATCCAGAAAATTCTAGAAATCTCCAAAGTTCAAGATCTTCCTTATATATATATAGAACGCTAGACGCGTCTGTTCCTGTCACTCTGTCCGGTTTTGGGTTTTTAATGTTAGTTTGACTGCCACCGAAACATAACTCGGGACCTGAAGCGCCGGAGGCGCGGCAACCAGATTGCTGGTAAAAGATATGAGATTTCAGACAACTGGTAACGAGATAATTAAGCTGAAAAGTGAAAAATTTCTTGGCAGGTTTTTGAACTGAAAACTTGAAAAAGCAGGTATCTTCCAGAAATTGAAAATA</canonical>
            <polymorphic>CGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGCCGTTTTTCGGGAATTTCGGATTTTTTTTTTGAATTGTTTCGCAATAATATTCGAAAAATAGATAACTTTCAACACATTTTAATGCAATAAAAATTTTTGGTCGGAGTGCCTCTTTAAGATTTCTGGAATTTGAGAATGTCTGCATTCCTCACTTTCCCAGTTTTTTGGGGAATTTTTAACATTTGAAAGATGTGAAAAGTCTGAATATTCAAAAACCAAAGCTATGATAAAAAACAAGGAACCAAAGAGCTCATTAAATATGTTTCGAACATTTCAAGCGTAAAGAAAAGTCTGGTCTATCCATTTGAAACAGAAGATAAGCTGACTAACTCAAAAATCGCTGTCTTGTTGTTCTGACTTGAAAAGAAAATGTGAAATTCGTCATTATTTGATTCAAAAAAATTCGAACGAAACAACATAATAATAAGGAAGTTAAACATTCGAAATTTTCTGSAAAAAAATGTGAAATTTGATTATCACCTTGGAAAAGGTGGACTAGAAAAAAGTTTGGACAGAGACTTTATTATAAAACTGAGAAATTCGGAAACTCGAGTAAATTGAAAAAATATTCAAAAAGTCAGAAATTCAAAAATTCGATTTCAAAAATGTGCACATTCTGGAATTTCTGAATTTCGAAATTTCAAAAAAAAATAGAAATCCAGAAAATTCTAGAAATCTCCAAAGTTCAAGATCTTCCTTATATATATATAGAACGCTAGACGCGTCTGTTCCTGTCACTCTGTCCGGTTTTGGGTTTTTAATGTTAGTTTGACTGCCACCGAAACATAACTCGGGACCTGAAGCGCCGGAGGCGCGGCAACCAGATTGCTGGTAAAAGATATGAGATTTCAGACAACTGGTAACGAGATAATTAAGCTGAAAAGTGAAAAATTTCTTGGCAGGTTTTTGAACTGAAAACTTGAAAAAGCAGGTATCTTCCAGAAATTGAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>224 153 103 99 97 91 85 64 47 37</canonical_bands>
                <polymorphic_bands>224 188 153 103 99 85 64 47 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCATTTGAAACAGAAGATAAG</pcr_primer_p1>
		<pcr_primer_p2>GTTTCCGAATTTCTCAGTTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCCATTTGAAACAGAAGATAAGCTGACTAACTCAAAAATCGCTGTCTTGTTGTTCTGACTTGAAAAGAAAATGTGAAATTCGTCATTATTTGATTCAAAAAAATTCGAACGAAACAACATAATAATAAGGAAGTTAAACATTCGAAATTTTCTGAAAAAAAATGTGAAATTTGATTATCACCTTGGAAAAGGTGGACTAGAAAAAAGTTTGGACAGAGACTTTATTATAAAACTGAGAAATTCGGAAAC</canonical_amplicon>
		<polymorphic_amplicon>ATCCATTTGAAACAGAAGATAAGCTGACTAACTCAAAAATCGCTGTCTTGTTGTTCTGACTTGAAAAGAAAATGTGAAATTCGTCATTATTTGATTCAAAAAAATTCGAACGAAACAACATAATAATAAGGAAGTTAAACATTCGAAATTTTCTGSAAAAAAATGTGAAATTTGATTATCACCTTGGAAAAGGTGGACTAGAAAAAAGTTTGGACAGAGACTTTATTATAAAACTGAGAAATTCGGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32208</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>57535</contig_pos>
        <strand>+</strand>
        <context>GAGAACGTTC[A/G]AAGTTTTGCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCATCAAAATACACATTACGGGCTAGATTTCAAGCCAAAGAGAACGTTC</left_flank>
        <right_flank>AAGTTTTGCGGTAACTTCTGAAAAAGGATAACTGTAACTATAACATTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTTGCGAATTGTTTGGTTAGTTAAAAAAAGATCAAAACATCAAAAATCGAAAATTGAAATTTTTTTGAAAAAATCAAAAAATTCAGAAAAGTTCAGTTTTAAAAGTTTTCAAAATTGACCGAGTTTTGAAAATCTGCTTATGGAGAATCTTGAAATCTCATAATTTCAGAATCTTAAACTTTCAGAATCAAAGGGTTTAAGATTTTTGGAATTCCAGAGTTTCGGAATATTAGAATATCAGAATTTGAGAATCTCAGACTCCTGCATTTCTGAATTTCGGAATTTCTGAAATTTTGAACTCCTGAAATTCTGAATTTCTGAGATTCTAACTTATTTTTGAATTTCTGAGTTTCTGAAAAACCAAAAAATCAAATTCGTCCAGGGATTATTCTACATTTGGTTCTGGAATATTCGGGTTTATCAAATTCTCGATAAATCCAAAATTCGACCATCAAAATACACATTACGGGCTAGATTTCAAGCCAAAGAGAACGTTCGAAGTTTTGCGGTAACTTCTGAAAAAGGATAACTGTAACTATAACATTTTTTGCAGTTCTCAAAATATGCATTCTTCTTTATCTCTTCGTGTTTGGTTTTCCGATATTCTTTGATTTTGCTTCAATCTTTTGATTTTTTACAAAAATATGAAATTATGCTAAATTATGTCATGGAATTTGGGGACGCTTCGTAAGTACAGTAATCCTTTTTTCGAAAATTAATCAATTTCTTCCAGACATCCCAATGTGATCGTACCAATAATCATGTTATCAGTACCCAGTTGGAAAAAAGAGTTTTTTGAAATTTTCAAATTTTTGCCGGGAATTCGAAAATTTGTATTGGGAAATTTGGAAATTGAAAACGGCGATTTGACGAAAAATTCGAAAAAACAAAATCAAAAAATCGAAACTGAAGAATATTTCAATCAATTTAAAATTGCTTGGGCTTGATTCTTATGCACTTTTCAACTTTTTTTTGAAATAAAATTTCAACTTTTTTCT</canonical>
            <polymorphic>TGTTTGCGAATTGTTTGGTTAGTTAAAAAAAGATCAAAACATCAAAAATCGAAAATTGAAATTTTTTTGAAAAAATCAAAAAATTCAGAAAAGTTCAGTTTTAAAAGTTTTCAAAATTGACCGAGTTTTGAAAATCTGCTTATGGAGAATCTTGAAATCTCATAATTTCAGAATCTTAAACTTTCAGAATCAAAGGGTTTAAGATTTTTGGAATTCCAGAGTTTCGGAATATTAGAATATCAGAATTTGAGAATCTCAGACTCCTGCATTTCTGAATTTCGGAATTTCTGAAATTTTGAACTCCTGAAATTCTGAATTTCTGAGATTCTAACTTATTTTTGAATTTCTGAGTTTCTGAAAAACCAAAAAATCAAATTCGTCCAGGGATTATTCTACATTTGGTTCTGGAATATTCGGGTTTATCAAATTCTCGATAAATCCAAAATTCGACCATCAAAATACACATTACGGGCTAGATTTCAAGCCAAAGAGAACGTTCRAAGTTTTGCGGTAACTTCTGAAAAAGGATAACTGTAACTATAACATTTTTTGCAGTTCTCAAAATATGCATTCTTCTTTATCTCTTCGTGTTTGGTTTTCCGATATTCTTTGATTTTGCTTCAATCTTTTGATTTTTTACAAAAATATGAAATTATGCTAAATTATGTCATGGAATTTGGGGACGCTTCGTAAGTACAGTAATCCTTTTTTCGAAAATTAATCAATTTCTTCCAGACATCCCAATGTGATCGTACCAATAATCATGTTATCAGTACCCAGTTGGAAAAAAGAGTTTTTTGAAATTTTCAAATTTTTGCCGGGAATTCGAAAATTTGTATTGGGAAATTTGGAAATTGAAAACGGCGATTTGACGAAAAATTCGAAAAAACAAAATCAAAAAATCGAAACTGAAGAATATTTCAATCAATTTAAAATTGCTTGGGCTTGATTCTTATGCACTTTTCAACTTTTTTTTGAAATAAAATTTCAACTTTTTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>498 213 119 115 55</canonical_bands>
                <polymorphic_bands>711 119 115 55</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>382 213 115 96 55 51 50 22 16</canonical_bands>
                <polymorphic_bands>382 264 115 96 55 50 22 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGATTATTCTACATTTGGTTCT</pcr_primer_p1>
		<pcr_primer_p2>ATCAAAAGATTGAAGCAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGGATTATTCTACATTTGGTTCTGGAATATTCGGGTTTATCAAATTCTCGATAAATCCAAAATTCGACCATCAAAATACACATTACGGGCTAGATTTCAAGCCAAAGAGAACGTTCGAAGTTTTGCGGTAACTTCTGAAAAAGGATAACTGTAACTATAACATTTTTTGCAGTTCTCAAAATATGCATTCTTCTTTATCTCTTCGTGTTTGGTTTTCCGATATTCTTTGATTTTGCTTCAATCTTTTGAT</canonical_amplicon>
		<polymorphic_amplicon>GGGATTATTCTACATTTGGTTCTGGAATATTCGGGTTTATCAAATTCTCGATAAATCCAAAATTCGACCATCAAAATACACATTACGGGCTAGATTTCAAGCCAAAGAGAACGTTCRAAGTTTTGCGGTAACTTCTGAAAAAGGATAACTGTAACTATAACATTTTTTGCAGTTCTCAAAATATGCATTCTTCTTTATCTCTTCGTGTTTGGTTTTCCGATATTCTTTGATTTTGCTTCAATCTTTTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32209</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>57755</contig_pos>
        <strand>+</strand>
        <context>TTCGAAAATY[C/T]ATCAATTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGGAATTTGGGGACGCTTCGTAAGTACAGTAATCCTTTTTTCGAAAATT</left_flank>
        <right_flank>ATCAATTTCTTCCAGACATCCCAATGTGATCGTACCAATAATCATGTTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTCGGAATATTAGAATATCAGAATTTGAGAATCTCAGACTCCTGCATTTCTGAATTTCGGAATTTCTGAAATTTTGAACTCCTGAAATTCTGAATTTCTGAGATTCTAACTTATTTTTGAATTTCTGAGTTTCTGAAAAACCAAAAAATCAAATTCGTCCAGGGATTATTCTACATTTGGTTCTGGAATATTCGGGTTTATCAAATTCTCGATAAATCCAAAATTCGACCATCAAAATACACATTACGGGCTAGATTTCAAGCCAAAGAGAACGTTCGAAGTTTTGCGGTAACTTCTGAAAAAGGATAACTGTAACTATAACATTTTTTGCAGTTCTCAAAATATGCATTCTTCTTTATCTCTTCGTGTTTGGTTTTCCGATATTCTTTGATTTTGCTTCAATCTTTTGATTTTTTACAAAAATATGAAATTATGCTAAATTATGTCATGGAATTTGGGGACGCTTCGTAAGTACAGTAATCCTTTTTTCGAAAATTAATCAATTTCTTCCAGACATCCCAATGTGATCGTACCAATAATCATGTTATCAGTACCCAGTTGGAAAAAAGAGTTTTTTGAAATTTTCAAATTTTTGCCGGGAATTCGAAAATTTGTATTGGGAAATTTGGAAATTGAAAACGGCGATTTGACGAAAAATTCGAAAAAACAAAATCAAAAAATCGAAACTGAAGAATATTTCAATCAATTTAAAATTGCTTGGGCTTGATTCTTATGCACTTTTCAACTTTTTTTTGAAATAAAATTTCAACTTTTTTCTATTTTCCTGATTTATGGGTTAACATGAATGATTTCACAATCCCAAAAACTTCAGAATCTCATATTAGAAATTCAGAAATTCAGAATCTCAGAAATTCAGAATCTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAATCTCAGAATCTCAGAATCTCTGA</canonical>
            <polymorphic>GTTTCGGAATATTAGAATATCAGAATTTGAGAATCTCAGACTCCTGCATTTCTGAATTTCGGAATTTCTGAAATTTTGAACTCCTGAAATTCTGAATTTCTGAGATTCTAACTTATTTTTGAATTTCTGAGTTTCTGAAAAACCAAAAAATCAAATTCGTCCAGGGATTATTCTACATTTGGTTCTGGAATATTCGGGTTTATCAAATTCTCGATAAATCCAAAATTCGACCATCAAAATACACATTACGGGCTAGATTTCAAGCCAAAGAGAACGTTCGAAGTTTTGCGGTAACTTCTGAAAAAGGATAACTGTAACTATAACATTTTTTGCAGTTCTCAAAATATGCATTCTTCTTTATCTCTTCGTGTTTGGTTTTCCGATATTCTTTGATTTTGCTTCAATCTTTTGATTTTTTACAAAAATATGAAATTATGCTAAATTATGTCATGGAATTTGGGGACGCTTCGTAAGTACAGTAATCCTTTTTTCGAAAATTYATCAATTTCTTCCAGACATCCCAATGTGATCGTACCAATAATCATGTTATCAGTACCCAGTTGGAAAAAAGAGTTTTTTGAAATTTTCAAATTTTTGCCGGGAATTCGAAAATTTGTATTGGGAAATTTGGAAATTGAAAACGGCGATTTGACGAAAAATTCGAAAAAACAAAATCAAAAAATCGAAACTGAAGAATATTTCAATCAATTTAAAATTGCTTGGGCTTGATTCTTATGCACTTTTCAACTTTTTTTTGAAATAAAATTTCAACTTTTTTCTATTTTCCTGATTTATGGGTTAACATGAATGATTTCACAATCCCAAAAACTTCAGAATCTCATATTAGAAATTCAGAAATTCAGAATCTCAGAAATTCAGAATCTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAATCTCAGAATCTCAGAATCTCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>498 212 201 89</canonical_bands>
                <polymorphic_bands>710 201 89</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTCTTTGATTTTGCTTCAATC</pcr_primer_p1>
		<pcr_primer_p2>TCCAAATTTCCCAATACAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATTCTTTGATTTTGCTTCAATCTTTTGATTTTTTACAAAAATATGAAATTATGCTAAATTATGTCATGGAATTTGGGGACGCTTCGTAAGTACAGTAATCCTTTTTTCGAAAATTAATCAATTTCTTCCAGACATCCCAATGTGATCGTACCAATAATCATGTTATCAGTACCCAGTTGGAAAAAAGAGTTTTTTGAAATTTTCAAATTTTTGCCGGGAATTCGAAAATTTGTATTGGGAAATTTGGA</canonical_amplicon>
		<polymorphic_amplicon>TATTCTTTGATTTTGCTTCAATCTTTTGATTTTTTACAAAAATATGAAATTATGCTAAATTATGTCATGGAATTTGGGGACGCTTCGTAAGTACAGTAATCCTTTTTTCGAAAATTYATCAATTTCTTCCAGACATCCCAATGTGATCGTACCAATAATCATGTTATCAGTACCCAGTTGGAAAAAAGAGTTTTTTGAAATTTTCAAATTTTTGCCGGGAATTCGAAAATTTGTATTGGGAAATTTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32210</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>57993</contig_pos>
        <strand>+</strand>
        <context>GATTCTTATG[C/T]ACTTTTCAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTGAAGAATATTTCAATCAATTTAAAATTGCTTGGGCTTGATTCTTATG</left_flank>
        <right_flank>ACTTTTCAACTTTTTTTTGAAATAAAATTTCAACTTTTTTCTATTTTCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATACACATTACGGGCTAGATTTCAAGCCAAAGAGAACGTTCGAAGTTTTGCGGTAACTTCTGAAAAAGGATAACTGTAACTATAACATTTTTTGCAGTTCTCAAAATATGCATTCTTCTTTATCTCTTCGTGTTTGGTTTTCCGATATTCTTTGATTTTGCTTCAATCTTTTGATTTTTTACAAAAATATGAAATTATGCTAAATTATGTCATGGAATTTGGGGACGCTTCGTAAGTACAGTAATCCTTTTTTCGAAAATTAATCAATTTCTTCCAGACATCCCAATGTGATCGTACCAATAATCATGTTATCAGTACCCAGTTGGAAAAAAGAGTTTTTTGAAATTTTCAAATTTTTGCCGGGAATTCGAAAATTTGTATTGGGAAATTTGGAAATTGAAAACGGCGATTTGACGAAAAATTCGAAAAAACAAAATCAAAAAATCGAAACTGAAGAATATTTCAATCAATTTAAAATTGCTTGGGCTTGATTCTTATGCACTTTTCAACTTTTTTTTGAAATAAAATTTCAACTTTTTTCTATTTTCCTGATTTATGGGTTAACATGAATGATTTCACAATCCCAAAAACTTCAGAATCTCATATTAGAAATTCAGAAATTCAGAATCTCAGAAATTCAGAATCTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAATCTCAGAATCTCAGAATCTCTGATTTTTAGAATTCCAGAATTTCCAAATTTCAGAATTCAAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAAAAGCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAAAAAATCGAAATTTAACAAAACCACTTGATCACGAAAACTATAAACAAAAAACAGGTGAAATCATCAAGCACCCTCTAATTTCTTCACCTTTTCCATATTTTTTCTCCAACT</canonical>
            <polymorphic>ATACACATTACGGGCTAGATTTCAAGCCAAAGAGAACGTTCGAAGTTTTGCGGTAACTTCTGAAAAAGGATAACTGTAACTATAACATTTTTTGCAGTTCTCAAAATATGCATTCTTCTTTATCTCTTCGTGTTTGGTTTTCCGATATTCTTTGATTTTGCTTCAATCTTTTGATTTTTTACAAAAATATGAAATTATGCTAAATTATGTCATGGAATTTGGGGACGCTTCGTAAGTACAGTAATCCTTTTTTCGAAAATTAATCAATTTCTTCCAGACATCCCAATGTGATCGTACCAATAATCATGTTATCAGTACCCAGTTGGAAAAAAGAGTTTTTTGAAATTTTCAAATTTTTGCCGGGAATTCGAAAATTTGTATTGGGAAATTTGGAAATTGAAAACGGCGATTTGACGAAAAATTCGAAAAAACAAAATCAAAAAATCGAAACTGAAGAATATTTCAATCAATTTAAAATTGCTTGGGCTTGATTCTTATGYACTTTTCAACTTTTTTTTGAAATAAAATTTCAACTTTTTTCTATTTTCCTGATTTATGGGTTAACATGAATGATTTCACAATCCCAAAAACTTCAGAATCTCATATTAGAAATTCAGAAATTCAGAATCTCAGAAATTCAGAATCTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAATCTCAGAATCTCAGAATCTCTGATTTTTAGAATTCCAGAATTTCCAAATTTCAGAATTCAAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAAAAGCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAAAAAATCGAAATTTAACAAAACCACTTGATCACGAAAACTATAAACAAAAAACAGGTGAAATCATCAAGCACCCTCTAATTTCTTCACCTTTTCCATATTTTTTCTCCAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>501 389 94 16</canonical_bands>
                <polymorphic_bands>890 94 16</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>334 211 158 127 77 26 25 16 13 8 5</canonical_bands>
                <polymorphic_bands>334 288 158 127 26 25 16 13 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCAGTACCCAGTTGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCATAAATCAGGAAAATAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATCAGTACCCAGTTGGAAAAAAGAGTTTTTTGAAATTTTCAAATTTTTGCCGGGAATTCGAAAATTTGTATTGGGAAATTTGGAAATTGAAAACGGCGATTTGACGAAAAATTCGAAAAAACAAAATCAAAAAATCGAAACTGAAGAATATTTCAATCAATTTAAAATTGCTTGGGCTTGATTCTTATGCACTTTTCAACTTTTTTTTGAAATAAAATTTCAACTTTTTTCTATTTTCCTGATTTATGG</canonical_amplicon>
		<polymorphic_amplicon>TATCAGTACCCAGTTGGAAAAAAGAGTTTTTTGAAATTTTCAAATTTTTGCCGGGAATTCGAAAATTTGTATTGGGAAATTTGGAAATTGAAAACGGCGATTTGACGAAAAATTCGAAAAAACAAAATCAAAAAATCGAAACTGAAGAATATTTCAATCAATTTAAAATTGCTTGGGCTTGATTCTTATGYACTTTTCAACTTTTTTTTGAAATAAAATTTCAACTTTTTTCTATTTTCCTGATTTATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32211</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>58011</contig_pos>
        <strand></strand>
        <context>AACTTTTTTT[T/C]GAAATAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAATTTAAAATTGCTTGGGCTTGATTCTTATGCACTTTTCAACTTTTTTT</left_flank>
        <right_flank>GAAATAAAATTTCAACTTTTTTCTATTTTCCTGATTTATGGGTTAACATG</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCAAGCCAAAGAGAACGTTCGAAGTTTTGCGGTAACTTCTGAAAAAGGATAACTGTAACTATAACATTTTTTGCAGTTCTCAAAATATGCATTCTTCTTTATCTCTTCGTGTTTGGTTTTCCGATATTCTTTGATTTTGCTTCAATCTTTTGATTTTTTACAAAAATATGAAATTATGCTAAATTATGTCATGGAATTTGGGGACGCTTCGTAAGTACAGTAATCCTTTTTTCGAAAATTAATCAATTTCTTCCAGACATCCCAATGTGATCGTACCAATAATCATGTTATCAGTACCCAGTTGGAAAAAAGAGTTTTTTGAAATTTTCAAATTTTTGCCGGGAATTCGAAAATTTGTATTGGGAAATTTGGAAATTGAAAACGGCGATTTGACGAAAAATTCGAAAAAACAAAATCAAAAAATCGAAACTGAAGAATATTTCAATCAATTTAAAATTGCTTGGGCTTGATTCTTATGCACTTTTCAACTTTTTTTTGAAATAAAATTTCAACTTTTTTCTATTTTCCTGATTTATGGGTTAACATGAATGATTTCACAATCCCAAAAACTTCAGAATCTCATATTAGAAATTCAGAAATTCAGAATCTCAGAAATTCAGAATCTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAATCTCAGAATCTCAGAATCTCTGATTTTTAGAATTCCAGAATTTCCAAATTTCAGAATTCAAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAAAAGCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAAAAAATCGAAATTTAACAAAACCACTTGATCACGAAAACTATAAACAAAAAACAGGTGAAATCATCAAGCACCCTCTAATTTCTTCACCTTTTCCATATTTTTTCTCCAACTTTTTTCTTTTTTTTTGAA</canonical>
            <polymorphic>ATTTCAAGCCAAAGAGAACGTTCGAAGTTTTGCGGTAACTTCTGAAAAAGGATAACTGTAACTATAACATTTTTTGCAGTTCTCAAAATATGCATTCTTCTTTATCTCTTCGTGTTTGGTTTTCCGATATTCTTTGATTTTGCTTCAATCTTTTGATTTTTTACAAAAATATGAAATTATGCTAAATTATGTCATGGAATTTGGGGACGCTTCGTAAGTACAGTAATCCTTTTTTCGAAAATTAATCAATTTCTTCCAGACATCCCAATGTGATCGTACCAATAATCATGTTATCAGTACCCAGTTGGAAAAAAGAGTTTTTTGAAATTTTCAAATTTTTGCCGGGAATTCGAAAATTTGTATTGGGAAATTTGGAAATTGAAAACGGCGATTTGACGAAAAATTCGAAAAAACAAAATCAAAAAATCGAAACTGAAGAATATTTCAATCAATTTAAAATTGCTTGGGCTTGATTCTTATGCACTTTTCAACTTTTTTTYGAAATAAAATTTCAACTTTTTTCTATTTTCCTGATTTATGGGTTAACATGAATGATTTCACAATCCCAAAAACTTCAGAATCTCATATTAGAAATTCAGAAATTCAGAATCTCAGAAATTCAGAATCTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAATCTCAGAATCTCAGAATCTCTGATTTTTAGAATTCCAGAATTTCCAAATTTCAGAATTCAAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAAAAGCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAAAAAATCGAAATTTAACAAAACCACTTGATCACGAAAACTATAAACAAAAAACAGGTGAAATCATCAAGCACCCTCTAATTTCTTCACCTTTTCCATATTTTTTCTCCAACTTTTTTCTTTTTTTTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGTACCCAGTTGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAATCATTCATGTTAACCCATAA</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>TCAGTACCCAGTTGGAAAAAAGAGTTTTTTGAAATTTTCAAATTTTTGCCGGGAATTCGAAAATTTGTATTGGGAAATTTGGAAATTGAAAACGGCGATTTGACGAAAAATTCGAAAAAACAAAATCAAAAAATCGAAACTGAAGAATATTTCAATCAATTTAAAATTGCTTGGGCTTGATTCTTATGCACTTTTCAACTTTTTTTTGAAATAAAATTTCAACTTTTTTCTATTTTCCTGATTTATGGGTTAACATGAATGATTT</canonical_amplicon>
		<polymorphic_amplicon>TCAGTACCCAGTTGGAAAAAAGAGTTTTTTGAAATTTTCAAATTTTTGCCGGGAATTCGAAAATTTGTATTGGGAAATTTGGAAATTGAAAACGGCGATTTGACGAAAAATTCGAAAAAACAAAATCAAAAAATCGAAACTGAAGAATATTTCAATCAATTTAAAATTGCTTGGGCTTGATTCTTATGCACTTTTCAACTTTTTTTYGAAATAAAATTTCAACTTTTTTCTATTTTCCTGATTTATGGGTTAACATGAATGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32212</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>59189</contig_pos>
        <strand>+</strand>
        <context>TTCAGAAAGT[G/T]TTTATAGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTGAGATTCTGAATATCTGATGTTTGGAAAATCTGTGCATTCAGAAAGT</left_flank>
        <right_flank>TTTATAGATTTGACATTCTGAATTTCTCTTTTGCAAAGAAGGTCTTCATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACTCGAGCTTTTAATCGAAATTTGAATTTTATTTTGGCGGGAACTTTATTCCAATGGATGGAAAATATGATTGGAAGATTAATGATTGCGCCTTACCAAAAAGGATGGATACAGTTGGCGGGGAATGGTAAGTGGACATCTGGAAATTCGGAAACTCTGAAAAAATTTCTTGAAAATTTGAATTTTCGCACTTTCCATTGAGATTCCGAGATTCTGAAATTCTGAGATTCTGACATTCTGGAGATTTTGACACTCTGAAAAAAGTTGAAAAAATCCAAAAGGTTCTTTTTTATCGAAGGAAATTTTCTGAAATTTTGAAAATCTGGGATTCTGAAACCCTAAACTTCCAGGATCGAGATTCTGAGATTCTAAGTTTCGAAGATTTTGAGATTCTGAGATCCTAGAAATCCGGGATTCTAAGAATCAGAGAATCAGAGATTCTGAGATTCTGAGATTCTGAATATCTGATGTTTGGAAAATCTGTGCATTCAGAAAGTTTTTATAGATTTGACATTCTGAATTTCTCTTTTGCAAAGAAGGTCTTCATCAATTTTGAATTTTCGTTTTTTTTTTGAATTTTCAGATTTGTAGATTTTTTGGATTTTTTTGTATTTCTGATTTCTCTGAAATTTCATTTCAGGATCTTTGAATTCCTGAATTCTGAAATTTTGAATTACACATTTTCCATCAAATAAATAAAAAATTGAATTTTCCAGATCCAAAAAAAGTCTACTCGGAATTCTTCACCACCTCCAAATACGAAATGATTCAAATCAAAAATTCGTTATTCGATTCGCCATTTTTCTCGATTGGTTCCATTTTGTTGACTCATTATATGGTCTTCGCAATTTTGGGTCTTACAGGGATTACTGTAGAAAGAAGTTTGGCCACTTTTTGGATCAAGTGAGTGTGGCCTAGAAATCTAAAGCTCGGCCATCAAAGTTCATTGGGTTCCTATAGCCTCTAGGCCCAGAAATCTGATTTTCTAGTCCACCAAG</canonical>
            <polymorphic>CAACTCGAGCTTTTAATCGAAATTTGAATTTTATTTTGGCGGGAACTTTATTCCAATGGATGGAAAATATGATTGGAAGATTAATGATTGCGCCTTACCAAAAAGGATGGATACAGTTGGCGGGGAATGGTAAGTGGACATCTGGAAATTCGGAAACTCTGAAAAAATTTCTTGAAAATTTGAATTTTCGCACTTTCCATTGAGATTCCGAGATTCTGAAATTCTGAGATTCTGACATTCTGGAGATTTTGACACTCTGAAAAAAGTTGAAAAAATCCAAAAGGTTCTTTTTTATCGAAGGAAATTTTCTGAAATTTTGAAAATCTGGGATTCTGAAACCCTAAACTTCCAGGATCGAGATTCTGAGATTCTAAGTTTCGAAGATTTTGAGATTCTGAGATCCTAGAAATCCGGGATTCTAAGAATCAGAGAATCAGAGATTCTGAGATTCTGAGATTCTGAATATCTGATGTTTGGAAAATCTGTGCATTCAGAAAGTKTTTATAGATTTGACATTCTGAATTTCTCTTTTGCAAAGAAGGTCTTCATCAATTTTGAATTTTCGTTTTTTTTTTGAATTTTCAGATTTGTAGATTTTTTGGATTTTTTTGTATTTCTGATTTCTCTGAAATTTCATTTCAGGATCTTTGAATTCCTGAATTCTGAAATTTTGAATTACACATTTTCCATCAAATAAATAAAAAATTGAATTTTCCAGATCCAAAAAAAGTCTACTCGGAATTCTTCACCACCTCCAAATACGAAATGATTCAAATCAAAAATTCGTTATTCGATTCGCCATTTTTCTCGATTGGTTCCATTTTGTTGACTCATTATATGGTCTTCGCAATTTTGGGTCTTACAGGGATTACTGTAGAAAGAAGTTTGGCCACTTTTTGGATCAAGTGAGTGTGGCCTAGAAATCTAAAGCTCGGCCATCAAAGTTCATTGGGTTCCTATAGCCTCTAGGCCCAGAAATCTGATTTTCTAGTCCACCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAAGGATGGATACAGTTG</pcr_primer_p1>
		<pcr_primer_p2>TCTACAAATCTGAAAATTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>496</pcr_amplicon_size>
		<canonical_amplicon>CAAAAAGGATGGATACAGTTGGCGGGGAATGGTAAGTGGACATCTGGAAATTCGGAAACTCTGAAAAAATTTCTTGAAAATTTGAATTTTCGCACTTTCCATTGAGATTCCGAGATTCTGAAATTCTGAGATTCTGACATTCTGGAGATTTTGACACTCTGAAAAAAGTTGAAAAAATCCAAAAGGTTCTTTTTTATCGAAGGAAATTTTCTGAAATTTTGAAAATCTGGGATTCTGAAACCCTAAACTTCCAGGATCGAGATTCTGAGATTCTAAGTTTCGAAGATTTTGAGATTCTGAGATCCTAGAAATCCGGGATTCTAAGAATCAGAGAATCAGAGATTCTGAGATTCTGAGATTCTGAATATCTGATGTTTGGAAAATCTGTGCATTCAGAAAGTTTTTATAGATTTGACATTCTGAATTTCTCTTTTGCAAAGAAGGTCTTCATCAATTTTGAATTTTCGTTTTTTTTTTGAATTTTCAGATTTGTAGA</canonical_amplicon>
		<polymorphic_amplicon>CAAAAAGGATGGATACAGTTGGCGGGGAATGGTAAGTGGACATCTGGAAATTCGGAAACTCTGAAAAAATTTCTTGAAAATTTGAATTTTCGCACTTTCCATTGAGATTCCGAGATTCTGAAATTCTGAGATTCTGACATTCTGGAGATTTTGACACTCTGAAAAAAGTTGAAAAAATCCAAAAGGTTCTTTTTTATCGAAGGAAATTTTCTGAAATTTTGAAAATCTGGGATTCTGAAACCCTAAACTTCCAGGATCGAGATTCTGAGATTCTAAGTTTCGAAGATTTTGAGATTCTGAGATCCTAGAAATCCGGGATTCTAAGAATCAGAGAATCAGAGATTCTGAGATTCTGAGATTCTGAATATCTGATGTTTGGAAAATCTGTGCATTCAGAAAGTKTTTATAGATTTGACATTCTGAATTTCTCTTTTGCAAAGAAGGTCTTCATCAATTTTGAATTTTCGTTTTTTTTTTGAATTTTCAGATTTGTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32213</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>59219</contig_pos>
        <strand>+</strand>
        <context>GAATTTCTCT[G/T]TTGCAAAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATCTGTGCATTCAGAAAGTTTTTATAGATTTGACATTCTGAATTTCTCT</left_flank>
        <right_flank>TTGCAAAGAAGGTCTTCATCAATTTTGAATTTTCGTTTTTTTTTTGAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATTTTGGCGGGAACTTTATTCCAATGGATGGAAAATATGATTGGAAGATTAATGATTGCGCCTTACCAAAAAGGATGGATACAGTTGGCGGGGAATGGTAAGTGGACATCTGGAAATTCGGAAACTCTGAAAAAATTTCTTGAAAATTTGAATTTTCGCACTTTCCATTGAGATTCCGAGATTCTGAAATTCTGAGATTCTGACATTCTGGAGATTTTGACACTCTGAAAAAAGTTGAAAAAATCCAAAAGGTTCTTTTTTATCGAAGGAAATTTTCTGAAATTTTGAAAATCTGGGATTCTGAAACCCTAAACTTCCAGGATCGAGATTCTGAGATTCTAAGTTTCGAAGATTTTGAGATTCTGAGATCCTAGAAATCCGGGATTCTAAGAATCAGAGAATCAGAGATTCTGAGATTCTGAGATTCTGAATATCTGATGTTTGGAAAATCTGTGCATTCAGAAAGTTTTTATAGATTTGACATTCTGAATTTCTCTTTTGCAAAGAAGGTCTTCATCAATTTTGAATTTTCGTTTTTTTTTTGAATTTTCAGATTTGTAGATTTTTTGGATTTTTTTGTATTTCTGATTTCTCTGAAATTTCATTTCAGGATCTTTGAATTCCTGAATTCTGAAATTTTGAATTACACATTTTCCATCAAATAAATAAAAAATTGAATTTTCCAGATCCAAAAAAAGTCTACTCGGAATTCTTCACCACCTCCAAATACGAAATGATTCAAATCAAAAATTCGTTATTCGATTCGCCATTTTTCTCGATTGGTTCCATTTTGTTGACTCATTATATGGTCTTCGCAATTTTGGGTCTTACAGGGATTACTGTAGAAAGAAGTTTGGCCACTTTTTGGATCAAGTGAGTGTGGCCTAGAAATCTAAAGCTCGGCCATCAAAGTTCATTGGGTTCCTATAGCCTCTAGGCCCAGAAATCTGATTTTCTAGTCCACCAAGCCCACCTTTTTTTTCAGCGACTACGAGAAA</canonical>
            <polymorphic>TTATTTTGGCGGGAACTTTATTCCAATGGATGGAAAATATGATTGGAAGATTAATGATTGCGCCTTACCAAAAAGGATGGATACAGTTGGCGGGGAATGGTAAGTGGACATCTGGAAATTCGGAAACTCTGAAAAAATTTCTTGAAAATTTGAATTTTCGCACTTTCCATTGAGATTCCGAGATTCTGAAATTCTGAGATTCTGACATTCTGGAGATTTTGACACTCTGAAAAAAGTTGAAAAAATCCAAAAGGTTCTTTTTTATCGAAGGAAATTTTCTGAAATTTTGAAAATCTGGGATTCTGAAACCCTAAACTTCCAGGATCGAGATTCTGAGATTCTAAGTTTCGAAGATTTTGAGATTCTGAGATCCTAGAAATCCGGGATTCTAAGAATCAGAGAATCAGAGATTCTGAGATTCTGAGATTCTGAATATCTGATGTTTGGAAAATCTGTGCATTCAGAAAGTTTTTATAGATTTGACATTCTGAATTTCTCTKTTGCAAAGAAGGTCTTCATCAATTTTGAATTTTCGTTTTTTTTTTGAATTTTCAGATTTGTAGATTTTTTGGATTTTTTTGTATTTCTGATTTCTCTGAAATTTCATTTCAGGATCTTTGAATTCCTGAATTCTGAAATTTTGAATTACACATTTTCCATCAAATAAATAAAAAATTGAATTTTCCAGATCCAAAAAAAGTCTACTCGGAATTCTTCACCACCTCCAAATACGAAATGATTCAAATCAAAAATTCGTTATTCGATTCGCCATTTTTCTCGATTGGTTCCATTTTGTTGACTCATTATATGGTCTTCGCAATTTTGGGTCTTACAGGGATTACTGTAGAAAGAAGTTTGGCCACTTTTTGGATCAAGTGAGTGTGGCCTAGAAATCTAAAGCTCGGCCATCAAAGTTCATTGGGTTCCTATAGCCTCTAGGCCCAGAAATCTGATTTTCTAGTCCACCAAGCCCACCTTTTTTTTCAGCGACTACGAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATGTTTGGAAAATCTGTG</pcr_primer_p1>
		<pcr_primer_p2>ATTTGATGGAAAATGTGTAATTC</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>TGATGTTTGGAAAATCTGTGCATTCAGAAAGTTTTTATAGATTTGACATTCTGAATTTCTCTTTTGCAAAGAAGGTCTTCATCAATTTTGAATTTTCGTTTTTTTTTTGAATTTTCAGATTTGTAGATTTTTTGGATTTTTTTGTATTTCTGATTTCTCTGAAATTTCATTTCAGGATCTTTGAATTCCTGAATTCTGAAATTTTGAATTACACATTTTCCATCAAAT</canonical_amplicon>
		<polymorphic_amplicon>TGATGTTTGGAAAATCTGTGCATTCAGAAAGTTTTTATAGATTTGACATTCTGAATTTCTCTKTTGCAAAGAAGGTCTTCATCAATTTTGAATTTTCGTTTTTTTTTTGAATTTTCAGATTTGTAGATTTTTTGGATTTTTTTGTATTTCTGATTTCTCTGAAATTTCATTTCAGGATCTTTGAATTCCTGAATTCTGAAATTTTGAATTACACATTTTCCATCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32214</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>59236</contig_pos>
        <strand>+</strand>
        <context>AGAAGGTCTT[A/C]RTCAATTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTTTTTATAGATTTGACATTCTGAATTTCTCTTTTGCAAAGAAGGTCTT</left_flank>
        <right_flank>ATCAATTTTGAATTTTCGTTTTTTTTTTGAATTTTCAGATTTGTAGATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATTCCAATGGATGGAAAATATGATTGGAAGATTAATGATTGCGCCTTACCAAAAAGGATGGATACAGTTGGCGGGGAATGGTAAGTGGACATCTGGAAATTCGGAAACTCTGAAAAAATTTCTTGAAAATTTGAATTTTCGCACTTTCCATTGAGATTCCGAGATTCTGAAATTCTGAGATTCTGACATTCTGGAGATTTTGACACTCTGAAAAAAGTTGAAAAAATCCAAAAGGTTCTTTTTTATCGAAGGAAATTTTCTGAAATTTTGAAAATCTGGGATTCTGAAACCCTAAACTTCCAGGATCGAGATTCTGAGATTCTAAGTTTCGAAGATTTTGAGATTCTGAGATCCTAGAAATCCGGGATTCTAAGAATCAGAGAATCAGAGATTCTGAGATTCTGAGATTCTGAATATCTGATGTTTGGAAAATCTGTGCATTCAGAAAGTTTTTATAGATTTGACATTCTGAATTTCTCTTTTGCAAAGAAGGTCTTCATCAATTTTGAATTTTCGTTTTTTTTTTGAATTTTCAGATTTGTAGATTTTTTGGATTTTTTTGTATTTCTGATTTCTCTGAAATTTCATTTCAGGATCTTTGAATTCCTGAATTCTGAAATTTTGAATTACACATTTTCCATCAAATAAATAAAAAATTGAATTTTCCAGATCCAAAAAAAGTCTACTCGGAATTCTTCACCACCTCCAAATACGAAATGATTCAAATCAAAAATTCGTTATTCGATTCGCCATTTTTCTCGATTGGTTCCATTTTGTTGACTCATTATATGGTCTTCGCAATTTTGGGTCTTACAGGGATTACTGTAGAAAGAAGTTTGGCCACTTTTTGGATCAAGTGAGTGTGGCCTAGAAATCTAAAGCTCGGCCATCAAAGTTCATTGGGTTCCTATAGCCTCTAGGCCCAGAAATCTGATTTTCTAGTCCACCAAGCCCACCTTTTTTTTCAGCGACTACGAGAAAAAACCAAGAAATTGGAT</canonical>
            <polymorphic>TTATTCCAATGGATGGAAAATATGATTGGAAGATTAATGATTGCGCCTTACCAAAAAGGATGGATACAGTTGGCGGGGAATGGTAAGTGGACATCTGGAAATTCGGAAACTCTGAAAAAATTTCTTGAAAATTTGAATTTTCGCACTTTCCATTGAGATTCCGAGATTCTGAAATTCTGAGATTCTGACATTCTGGAGATTTTGACACTCTGAAAAAAGTTGAAAAAATCCAAAAGGTTCTTTTTTATCGAAGGAAATTTTCTGAAATTTTGAAAATCTGGGATTCTGAAACCCTAAACTTCCAGGATCGAGATTCTGAGATTCTAAGTTTCGAAGATTTTGAGATTCTGAGATCCTAGAAATCCGGGATTCTAAGAATCAGAGAATCAGAGATTCTGAGATTCTGAGATTCTGAATATCTGATGTTTGGAAAATCTGTGCATTCAGAAAGTTTTTATAGATTTGACATTCTGAATTTCTCTTTTGCAAAGAAGGTCTTMATCAATTTTGAATTTTCGTTTTTTTTTTGAATTTTCAGATTTGTAGATTTTTTGGATTTTTTTGTATTTCTGATTTCTCTGAAATTTCATTTCAGGATCTTTGAATTCCTGAATTCTGAAATTTTGAATTACACATTTTCCATCAAATAAATAAAAAATTGAATTTTCCAGATCCAAAAAAAGTCTACTCGGAATTCTTCACCACCTCCAAATACGAAATGATTCAAATCAAAAATTCGTTATTCGATTCGCCATTTTTCTCGATTGGTTCCATTTTGTTGACTCATTATATGGTCTTCGCAATTTTGGGTCTTACAGGGATTACTGTAGAAAGAAGTTTGGCCACTTTTTGGATCAAGTGAGTGTGGCCTAGAAATCTAAAGCTCGGCCATCAAAGTTCATTGGGTTCCTATAGCCTCTAGGCCCAGAAATCTGATTTTCTAGTCCACCAAGCCCACCTTTTTTTTCAGCGACTACGAGAAAAAACCAAGAAATTGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>495 280 225</canonical_bands>
                <polymorphic_bands>720 280</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATGTTTGGAAAATCTGTG</pcr_primer_p1>
		<pcr_primer_p2>ATTTGATGGAAAATGTGTAATTC</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>TGATGTTTGGAAAATCTGTGCATTCAGAAAGTTTTTATAGATTTGACATTCTGAATTTCTCTTTTGCAAAGAAGGTCTTCATCAATTTTGAATTTTCGTTTTTTTTTTGAATTTTCAGATTTGTAGATTTTTTGGATTTTTTTGTATTTCTGATTTCTCTGAAATTTCATTTCAGGATCTTTGAATTCCTGAATTCTGAAATTTTGAATTACACATTTTCCATCAAAT</canonical_amplicon>
		<polymorphic_amplicon>TGATGTTTGGAAAATCTGTGCATTCAGAAAGTTTTTATAGATTTGACATTCTGAATTTCTCTTTTGCAAAGAAGGTCTTMATCAATTTTGAATTTTCGTTTTTTTTTTGAATTTTCAGATTTGTAGATTTTTTGGATTTTTTTGTATTTCTGATTTCTCTGAAATTTCATTTCAGGATCTTTGAATTCCTGAATTCTGAAATTTTGAATTACACATTTTCCATCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32215</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>59237</contig_pos>
        <strand>+</strand>
        <context>GAAGGTCTTM[A/G]TCAATTTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTTTATAGATTTGACATTCTGAATTTCTCTTTTGCAAAGAAGGTCTTC</left_flank>
        <right_flank>TCAATTTTGAATTTTCGTTTTTTTTTTGAATTTTCAGATTTGTAGATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTCCAATGGATGGAAAATATGATTGGAAGATTAATGATTGCGCCTTACCAAAAAGGATGGATACAGTTGGCGGGGAATGGTAAGTGGACATCTGGAAATTCGGAAACTCTGAAAAAATTTCTTGAAAATTTGAATTTTCGCACTTTCCATTGAGATTCCGAGATTCTGAAATTCTGAGATTCTGACATTCTGGAGATTTTGACACTCTGAAAAAAGTTGAAAAAATCCAAAAGGTTCTTTTTTATCGAAGGAAATTTTCTGAAATTTTGAAAATCTGGGATTCTGAAACCCTAAACTTCCAGGATCGAGATTCTGAGATTCTAAGTTTCGAAGATTTTGAGATTCTGAGATCCTAGAAATCCGGGATTCTAAGAATCAGAGAATCAGAGATTCTGAGATTCTGAGATTCTGAATATCTGATGTTTGGAAAATCTGTGCATTCAGAAAGTTTTTATAGATTTGACATTCTGAATTTCTCTTTTGCAAAGAAGGTCTTCATCAATTTTGAATTTTCGTTTTTTTTTTGAATTTTCAGATTTGTAGATTTTTTGGATTTTTTTGTATTTCTGATTTCTCTGAAATTTCATTTCAGGATCTTTGAATTCCTGAATTCTGAAATTTTGAATTACACATTTTCCATCAAATAAATAAAAAATTGAATTTTCCAGATCCAAAAAAAGTCTACTCGGAATTCTTCACCACCTCCAAATACGAAATGATTCAAATCAAAAATTCGTTATTCGATTCGCCATTTTTCTCGATTGGTTCCATTTTGTTGACTCATTATATGGTCTTCGCAATTTTGGGTCTTACAGGGATTACTGTAGAAAGAAGTTTGGCCACTTTTTGGATCAAGTGAGTGTGGCCTAGAAATCTAAAGCTCGGCCATCAAAGTTCATTGGGTTCCTATAGCCTCTAGGCCCAGAAATCTGATTTTCTAGTCCACCAAGCCCACCTTTTTTTTCAGCGACTACGAGAAAAAACCAAGAAATTGGATT</canonical>
            <polymorphic>TATTCCAATGGATGGAAAATATGATTGGAAGATTAATGATTGCGCCTTACCAAAAAGGATGGATACAGTTGGCGGGGAATGGTAAGTGGACATCTGGAAATTCGGAAACTCTGAAAAAATTTCTTGAAAATTTGAATTTTCGCACTTTCCATTGAGATTCCGAGATTCTGAAATTCTGAGATTCTGACATTCTGGAGATTTTGACACTCTGAAAAAAGTTGAAAAAATCCAAAAGGTTCTTTTTTATCGAAGGAAATTTTCTGAAATTTTGAAAATCTGGGATTCTGAAACCCTAAACTTCCAGGATCGAGATTCTGAGATTCTAAGTTTCGAAGATTTTGAGATTCTGAGATCCTAGAAATCCGGGATTCTAAGAATCAGAGAATCAGAGATTCTGAGATTCTGAGATTCTGAATATCTGATGTTTGGAAAATCTGTGCATTCAGAAAGTTTTTATAGATTTGACATTCTGAATTTCTCTTTTGCAAAGAAGGTCTTCRTCAATTTTGAATTTTCGTTTTTTTTTTGAATTTTCAGATTTGTAGATTTTTTGGATTTTTTTGTATTTCTGATTTCTCTGAAATTTCATTTCAGGATCTTTGAATTCCTGAATTCTGAAATTTTGAATTACACATTTTCCATCAAATAAATAAAAAATTGAATTTTCCAGATCCAAAAAAAGTCTACTCGGAATTCTTCACCACCTCCAAATACGAAATGATTCAAATCAAAAATTCGTTATTCGATTCGCCATTTTTCTCGATTGGTTCCATTTTGTTGACTCATTATATGGTCTTCGCAATTTTGGGTCTTACAGGGATTACTGTAGAAAGAAGTTTGGCCACTTTTTGGATCAAGTGAGTGTGGCCTAGAAATCTAAAGCTCGGCCATCAAAGTTCATTGGGTTCCTATAGCCTCTAGGCCCAGAAATCTGATTTTCTAGTCCACCAAGCCCACCTTTTTTTTCAGCGACTACGAGAAAAAACCAAGAAATTGGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATGTTTGGAAAATCTGTG</pcr_primer_p1>
		<pcr_primer_p2>ATTTGATGGAAAATGTGTAATTC</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>TGATGTTTGGAAAATCTGTGCATTCAGAAAGTTTTTATAGATTTGACATTCTGAATTTCTCTTTTGCAAAGAAGGTCTTCATCAATTTTGAATTTTCGTTTTTTTTTTGAATTTTCAGATTTGTAGATTTTTTGGATTTTTTTGTATTTCTGATTTCTCTGAAATTTCATTTCAGGATCTTTGAATTCCTGAATTCTGAAATTTTGAATTACACATTTTCCATCAAAT</canonical_amplicon>
		<polymorphic_amplicon>TGATGTTTGGAAAATCTGTGCATTCAGAAAGTTTTTATAGATTTGACATTCTGAATTTCTCTTTTGCAAAGAAGGTCTTCRTCAATTTTGAATTTTCGTTTTTTTTTTGAATTTTCAGATTTGTAGATTTTTTGGATTTTTTTGTATTTCTGATTTCTCTGAAATTTCATTTCAGGATCTTTGAATTCCTGAATTCTGAAATTTTGAATTACACATTTTCCATCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32216</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>59351</contig_pos>
        <strand>+</strand>
        <context>ATTCCTGAAT[A/T]CTGAAATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATTTCTGATTTCTCTGAAATTTCATTTCAGGATCTTTGAATTCCTGAAT</left_flank>
        <right_flank>CTGAAATTTTGAATTACACATTTTCCATCAAATAAATAAAAAATTGAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATTTCTTGAAAATTTGAATTTTCGCACTTTCCATTGAGATTCCGAGATTCTGAAATTCTGAGATTCTGACATTCTGGAGATTTTGACACTCTGAAAAAAGTTGAAAAAATCCAAAAGGTTCTTTTTTATCGAAGGAAATTTTCTGAAATTTTGAAAATCTGGGATTCTGAAACCCTAAACTTCCAGGATCGAGATTCTGAGATTCTAAGTTTCGAAGATTTTGAGATTCTGAGATCCTAGAAATCCGGGATTCTAAGAATCAGAGAATCAGAGATTCTGAGATTCTGAGATTCTGAATATCTGATGTTTGGAAAATCTGTGCATTCAGAAAGTTTTTATAGATTTGACATTCTGAATTTCTCTTTTGCAAAGAAGGTCTTCATCAATTTTGAATTTTCGTTTTTTTTTTGAATTTTCAGATTTGTAGATTTTTTGGATTTTTTTGTATTTCTGATTTCTCTGAAATTTCATTTCAGGATCTTTGAATTCCTGAATTCTGAAATTTTGAATTACACATTTTCCATCAAATAAATAAAAAATTGAATTTTCCAGATCCAAAAAAAGTCTACTCGGAATTCTTCACCACCTCCAAATACGAAATGATTCAAATCAAAAATTCGTTATTCGATTCGCCATTTTTCTCGATTGGTTCCATTTTGTTGACTCATTATATGGTCTTCGCAATTTTGGGTCTTACAGGGATTACTGTAGAAAGAAGTTTGGCCACTTTTTGGATCAAGTGAGTGTGGCCTAGAAATCTAAAGCTCGGCCATCAAAGTTCATTGGGTTCCTATAGCCTCTAGGCCCAGAAATCTGATTTTCTAGTCCACCAAGCCCACCTTTTTTTTCAGCGACTACGAGAAAAAACCAAGAAATTGGATTCCAATTTTCGTCCTAACTACCCTACAATTAATTTCTTGGCTAATTGCCTACTCGGCAATTCAAATTTTACTGGATATTTATTCCTGGTTGATGATTGGAATTCTAGTATTGACT</canonical>
            <polymorphic>AAAAATTTCTTGAAAATTTGAATTTTCGCACTTTCCATTGAGATTCCGAGATTCTGAAATTCTGAGATTCTGACATTCTGGAGATTTTGACACTCTGAAAAAAGTTGAAAAAATCCAAAAGGTTCTTTTTTATCGAAGGAAATTTTCTGAAATTTTGAAAATCTGGGATTCTGAAACCCTAAACTTCCAGGATCGAGATTCTGAGATTCTAAGTTTCGAAGATTTTGAGATTCTGAGATCCTAGAAATCCGGGATTCTAAGAATCAGAGAATCAGAGATTCTGAGATTCTGAGATTCTGAATATCTGATGTTTGGAAAATCTGTGCATTCAGAAAGTTTTTATAGATTTGACATTCTGAATTTCTCTTTTGCAAAGAAGGTCTTCATCAATTTTGAATTTTCGTTTTTTTTTTGAATTTTCAGATTTGTAGATTTTTTGGATTTTTTTGTATTTCTGATTTCTCTGAAATTTCATTTCAGGATCTTTGAATTCCTGAATWCTGAAATTTTGAATTACACATTTTCCATCAAATAAATAAAAAATTGAATTTTCCAGATCCAAAAAAAGTCTACTCGGAATTCTTCACCACCTCCAAATACGAAATGATTCAAATCAAAAATTCGTTATTCGATTCGCCATTTTTCTCGATTGGTTCCATTTTGTTGACTCATTATATGGTCTTCGCAATTTTGGGTCTTACAGGGATTACTGTAGAAAGAAGTTTGGCCACTTTTTGGATCAAGTGAGTGTGGCCTAGAAATCTAAAGCTCGGCCATCAAAGTTCATTGGGTTCCTATAGCCTCTAGGCCCAGAAATCTGATTTTCTAGTCCACCAAGCCCACCTTTTTTTTCAGCGACTACGAGAAAAAACCAAGAAATTGGATTCCAATTTTCGTCCTAACTACCCTACAATTAATTTCTTGGCTAATTGCCTACTCGGCAATTCAAATTTTACTGGATATTTATTCCTGGTTGATGATTGGAATTCTAGTATTGACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>330 208 83 53 42 41 37 37 36 31 21 19 16 11 10 8 8 6 3</canonical_bands>
                <polymorphic_bands>330 208 83 53 42 41 37 37 36 31 21 19 16 16 11 10 6 3</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>488 407 81 16 8</canonical_bands>
                <polymorphic_bands>488 407 89 16</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>243 181 74 65 52 47 37 34 32 32 30 26 25 25 24 9 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>243 181 111 65 52 47 34 32 32 30 26 25 25 24 9 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>208 191 83 68 53 41 37 36 31 30 30 23 21 19 16 15 12 11 11 10 8 8 7 7 6 6 5 4 3</canonical_bands>
                <polymorphic_bands>208 191 83 68 53 41 37 36 31 30 30 23 21 19 16 16 15 12 11 11 10 7 7 6 6 5 4 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTATTTCTGATTTCTCTGA</pcr_primer_p1>
		<pcr_primer_p2>AAAATTGCGAAGACCATATAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTATTTCTGATTTCTCTGAAATTTCATTTCAGGATCTTTGAATTCCTGAATTCTGAAATTTTGAATTACACATTTTCCATCAAATAAATAAAAAATTGAATTTTCCAGATCCAAAAAAAGTCTACTCGGAATTCTTCACCACCTCCAAATACGAAATGATTCAAATCAAAAATTCGTTATTCGATTCGCCATTTTTCTCGATTGGTTCCATTTTGTTGACTCATTATATGGTCTTCGCAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTATTTCTGATTTCTCTGAAATTTCATTTCAGGATCTTTGAATTCCTGAATWCTGAAATTTTGAATTACACATTTTCCATCAAATAAATAAAAAATTGAATTTTCCAGATCCAAAAAAAGTCTACTCGGAATTCTTCACCACCTCCAAATACGAAATGATTCAAATCAAAAATTCGTTATTCGATTCGCCATTTTTCTCGATTGGTTCCATTTTGTTGACTCATTATATGGTCTTCGCAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32217</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>90941</contig_pos>
        <strand></strand>
        <context>tttttttttw[A/T]atttttarat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTTGCAACTGAAAGAGAAGGAATTATCAACAATTGTAAGTTTTTTTTTA</left_flank>
        <right_flank>ATTTTTAGATAAAATAATTTTGTTTTCTCTTATAGTGTTCAACGAACTAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGGTGAAAGTTGTTGCTGAAGAGCAAGAGGTCTCTGCTCCCCCAAAGAAGAAGCTGAAAGTCAGCGCTAAGAAAGTAACCGTCTCCGAACCAGCTGAAGAGGAGGACAATCTGGAATCAGTTGATGAGCAAACCGGAGCCGATGAGTCTCTTATTGATGTTCCGAAACTGAAGAGAAAGAGACCACTTGTAGTCACCAAGTCGGTTAAAGAACAGCTACTGAACATGCCAAGACAAGAGAGAAAGAGGTTCCTGAAAGAGCTCAAAAAGAAGAGGAAGCCAGAAGGAGAGCGTGCCCATAAGTGCAAGATTCTTTGGGAAAAAATCAGAATGGGAAAGACGCCAAAGGCAGAGAAGGACGAGGCGATTCATGAGTTGTACGGACTGGTTAAAGGACATGCTGCGAAGTTGATCTACTCTCATGACACAAGCAGAGTTATTGAGTGTTTGGTTGCAACTGAAAGAGAAGGAATTATCAACAATTGTAAGTTTTTTTTTAAATTTTTAGATAAAATAATTTTGTTTTCTCTTATAGTGTTCAACGAACTAACGCCAGAGATCGTTAGAATGTCCAAGAACGTCTATTCTAAGTTTTTCGTGAAGAAAATGTTGAAGAACGGCACAAAAGAACAACGCGACCTCATCATCACCGCTTTCCGTGGCCATGCTCCAACTCTTCTCAGAATCAAGCACGCTGCTGAAGTCCTCGAGTATGCTTACAATGACTTTGCTAATGCTCATCAACGCAATGACATTATCACAGAGTTCTATGGAAAGGAGTTTATCATTTTCCGAGTAAGGGATCACGCCTTGCTTATAAATCCGTATTATTTGCCTTGCAGGAGGATAAAATCCGCCCATTATCGGAGATTCTTGCTGAGAAACCAGAAAAGAAAGCTGTGATCATGAAGCATTTGGACGAGGTTATCGGAGCTGTCAACGAGAAGGAGACTCTCAGACTTTCGATTCTCCACAAGCTTATGCTCGACTTCTTTGAGAA</canonical>
            <polymorphic>TCGGTGAAAGTTGTTGCTGAAGAGCAAGAGGTCTCTGCTCCCCCAAAGAAGAAGCTGAAAGTCAGCGCTAAGAAAGTAACCGTCTCCGAACCAGCTGAAGAGGAGGACAATCTGGAATCAGTTGATGAGCAAACCGGAGCCGATGAGTCTCTTATTGATGTTCCGAAACTGAAGAGAAAGAGACCACTTGTAGTCACCAAGTCGGTTAAAGAACAGCTACTGAACATGCCAAGACAAGAGAGAAAGAGGTTCCTGAAAGAGCTCAAAAAGAAGAGGAAGCCAGAAGGAGAGCGTGCCCATAAGTGCAAGATTCTTTGGGAAAAAATCAGAATGGGAAAGACGCCAAAGGCAGAGAAGGACGAGGCGATTCATGAGTTGTACGGACTGGTTAAAGGACATGCTGCGAAGTTGATCTACTCTCATGACACAAGCAGAGTTATTGAGTGTTTGGTTGCAACTGAAAGAGAAGGAATTATCAACAATTGTAAGTTTTTTTTTAWATTTTTAGATAAAATAATTTTGTTTTCTCTTATAGTGTTCAACGAACTAACGCCAGAGATCGTTAGAATGTCCAAGAACGTCTATTCTAAGTTTTTCGTGAAGAAAATGTTGAAGAACGGCACAAAAGAACAACGCGACCTCATCATCACCGCTTTCCGTGGCCATGCTCCAACTCTTCTCAGAATCAAGCACGCTGCTGAAGTCCTCGAGTATGCTTACAATGACTTTGCTAATGCTCATCAACGCAATGACATTATCACAGAGTTCTATGGAAAGGAGTTTATCATTTTCCGAGTAAGGGATCACGCCTTGCTTATAAATCCGTATTATTTGCCTTGCAGGAGGATAAAATCCGCCCATTATCGGAGATTCTTGCTGAGAAACCAGAAAAGAAAGCTGTGATCATGAAGCATTTGGACGAGGTTATCGGAGCTGTCAACGAGAAGGAGACTCTCAGACTTTCGATTCTCCACAAGCTTATGCTCGACTTCTTTGAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>503 206 183 108</canonical_bands>
                <polymorphic_bands>611 206 183</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>485 470 19 16 10</canonical_bands>
                <polymorphic_bands>485 470 35 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTTGTACGGACTGGTTAAAG</pcr_primer_p1>
		<pcr_primer_p2>CGTTCTTCAACATTTTCTTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAGTTGTACGGACTGGTTAAAGGACATGCTGCGAAGTTGATCTACTCTCATGACACAAGCAGAGTTATTGAGTGTTTGGTTGCAACTGAAAGAGAAGGAATTATCAACAATTGTAAGTTTTTTTTTAAATTTTTAGATAAAATAATTTTGTTTTCTCTTATAGTGTTCAACGAACTAACGCCAGAGATCGTTAGAATGTCCAAGAACGTCTATTCTAAGTTTTTCGTGAAGAAAATGTTGAAGAACG</canonical_amplicon>
		<polymorphic_amplicon>GAGTTGTACGGACTGGTTAAAGGACATGCTGCGAAGTTGATCTACTCTCATGACACAAGCAGAGTTATTGAGTGTTTGGTTGCAACTGAAAGAGAAGGAATTATCAACAATTGTAAGTTTTTTTTTAWATTTTTAGATAAAATAATTTTGTTTTCTCTTATAGTGTTCAACGAACTAACGCCAGAGATCGTTAGAATGTCCAAGAACGTCTATTCTAAGTTTTTCGTGAAGAAAATGTTGAAGAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32218</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>90949</contig_pos>
        <strand>+</strand>
        <context>twwattttta[A/G]ataaaataat</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGAAAGAGAAGGAATTATCAACAATTGTAAGTTTTTTTTTAAATTTTTA</left_flank>
        <right_flank>ATAAAATAATTTTGTTTTCTCTTATAGTGTTCAACGAACTAACGCCAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTGTTGCTGAAGAGCAAGAGGTCTCTGCTCCCCCAAAGAAGAAGCTGAAAGTCAGCGCTAAGAAAGTAACCGTCTCCGAACCAGCTGAAGAGGAGGACAATCTGGAATCAGTTGATGAGCAAACCGGAGCCGATGAGTCTCTTATTGATGTTCCGAAACTGAAGAGAAAGAGACCACTTGTAGTCACCAAGTCGGTTAAAGAACAGCTACTGAACATGCCAAGACAAGAGAGAAAGAGGTTCCTGAAAGAGCTCAAAAAGAAGAGGAAGCCAGAAGGAGAGCGTGCCCATAAGTGCAAGATTCTTTGGGAAAAAATCAGAATGGGAAAGACGCCAAAGGCAGAGAAGGACGAGGCGATTCATGAGTTGTACGGACTGGTTAAAGGACATGCTGCGAAGTTGATCTACTCTCATGACACAAGCAGAGTTATTGAGTGTTTGGTTGCAACTGAAAGAGAAGGAATTATCAACAATTGTAAGTTTTTTTTTAAATTTTTAGATAAAATAATTTTGTTTTCTCTTATAGTGTTCAACGAACTAACGCCAGAGATCGTTAGAATGTCCAAGAACGTCTATTCTAAGTTTTTCGTGAAGAAAATGTTGAAGAACGGCACAAAAGAACAACGCGACCTCATCATCACCGCTTTCCGTGGCCATGCTCCAACTCTTCTCAGAATCAAGCACGCTGCTGAAGTCCTCGAGTATGCTTACAATGACTTTGCTAATGCTCATCAACGCAATGACATTATCACAGAGTTCTATGGAAAGGAGTTTATCATTTTCCGAGTAAGGGATCACGCCTTGCTTATAAATCCGTATTATTTGCCTTGCAGGAGGATAAAATCCGCCCATTATCGGAGATTCTTGCTGAGAAACCAGAAAAGAAAGCTGTGATCATGAAGCATTTGGACGAGGTTATCGGAGCTGTCAACGAGAAGGAGACTCTCAGACTTTCGATTCTCCACAAGCTTATGCTCGACTTCTTTGAGAACTGTGATG</canonical>
            <polymorphic>AGTTGTTGCTGAAGAGCAAGAGGTCTCTGCTCCCCCAAAGAAGAAGCTGAAAGTCAGCGCTAAGAAAGTAACCGTCTCCGAACCAGCTGAAGAGGAGGACAATCTGGAATCAGTTGATGAGCAAACCGGAGCCGATGAGTCTCTTATTGATGTTCCGAAACTGAAGAGAAAGAGACCACTTGTAGTCACCAAGTCGGTTAAAGAACAGCTACTGAACATGCCAAGACAAGAGAGAAAGAGGTTCCTGAAAGAGCTCAAAAAGAAGAGGAAGCCAGAAGGAGAGCGTGCCCATAAGTGCAAGATTCTTTGGGAAAAAATCAGAATGGGAAAGACGCCAAAGGCAGAGAAGGACGAGGCGATTCATGAGTTGTACGGACTGGTTAAAGGACATGCTGCGAAGTTGATCTACTCTCATGACACAAGCAGAGTTATTGAGTGTTTGGTTGCAACTGAAAGAGAAGGAATTATCAACAATTGTAAGTTTTTTTTTAAATTTTTARATAAAATAATTTTGTTTTCTCTTATAGTGTTCAACGAACTAACGCCAGAGATCGTTAGAATGTCCAAGAACGTCTATTCTAAGTTTTTCGTGAAGAAAATGTTGAAGAACGGCACAAAAGAACAACGCGACCTCATCATCACCGCTTTCCGTGGCCATGCTCCAACTCTTCTCAGAATCAAGCACGCTGCTGAAGTCCTCGAGTATGCTTACAATGACTTTGCTAATGCTCATCAACGCAATGACATTATCACAGAGTTCTATGGAAAGGAGTTTATCATTTTCCGAGTAAGGGATCACGCCTTGCTTATAAATCCGTATTATTTGCCTTGCAGGAGGATAAAATCCGCCCATTATCGGAGATTCTTGCTGAGAAACCAGAAAAGAAAGCTGTGATCATGAAGCATTTGGACGAGGTTATCGGAGCTGTCAACGAGAAGGAGACTCTCAGACTTTCGATTCTCCACAAGCTTATGCTCGACTTCTTTGAGAACTGTGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAACTGAAAGAGAAGGAATTAT</pcr_primer_p1>
		<pcr_primer_p2>GTGCTTGATTCTGAGAAGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GCAACTGAAAGAGAAGGAATTATCAACAATTGTAAGTTTTTTTTTAAATTTTTAGATAAAATAATTTTGTTTTCTCTTATAGTGTTCAACGAACTAACGCCAGAGATCGTTAGAATGTCCAAGAACGTCTATTCTAAGTTTTTCGTGAAGAAAATGTTGAAGAACGGCACAAAAGAACAACGCGACCTCATCATCACCGCTTTCCGTGGCCATGCTCCAACTCTTCTCAGAATCAAGCAC</canonical_amplicon>
		<polymorphic_amplicon>GCAACTGAAAGAGAAGGAATTATCAACAATTGTAAGTTTTTTTTTAAATTTTTARATAAAATAATTTTGTTTTCTCTTATAGTGTTCAACGAACTAACGCCAGAGATCGTTAGAATGTCCAAGAACGTCTATTCTAAGTTTTTCGTGAAGAAAATGTTGAAGAACGGCACAAAAGAACAACGCGACCTCATCATCACCGCTTTCCGTGGCCATGCTCCAACTCTTCTCAGAATCAAGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32219</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>121044</contig_pos>
        <strand></strand>
        <context>AAAATCAAAA[T/G]TTGCTTTTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TGAAAAGTTATTCTATTGATTTTTTGTGTTGTCCATCTGCAAAATCAAAA</left_flank>
        <right_flank>TTGCTTTTAAAATTTGGTCCCTTTCTGAAAAATGAAAACTTTGAAAAAGG</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTAAACATTTTGAAGATGTTATCACCGGCTCAGTGCCTTGCCATATATGGCGGGTCCACACTTTTGGCGTACATTGAGACGTCAAAGTTCGAGAAGAATCATCATGTTCTGTTGAGTGCTCCATTGGTTATTCTGGCCATGTTGTCATTGGCGACGACGATGAATCCAAAGTAAGTTTTTAGTTTTAGGAAAGTTTAGAAATTGAGGTTTCGAAGTTAATTAAACTGAAGCGTAATTACCGTACTTGTTCTAATAGAAGCCCTCCGGAACCGTCAACTTTGAACTCAATTATCTCAGTTCATACAAGAGCTATCAAAAATAGGTCAACTGTTAAAATGTTTGCAACATTATGATAAACAAAATTATCTGTTGACAAATTTTTTATATCTATTACAGGAACCGAGATAATTTTGATCGAATAATTAACCGCCAATGAGCCGCTGACGGCTGAAAAGTTATTCTATTGATTTTTTGTGTTGTCCATCTGCAAAATCAAAATTTGCTTTTAAAATTTGGTCCCTTTCTGAAAAATGAAAACTTTGAAAAAGGATTTTTTTTGGGTTTCATAAAACAGACCATTAAACAGAAATTGGAAAACTTCCTAGGCAACATCAAAAATGTATCAACTGATAAACTATTTATCATCTATATAAGCTCAAAGTAGGCGGTCCAGGGTGCCTTCTATTTAGCCTGTACTTTCGCTTTGAGCTCAATTATCTTAGTTCCTATGAGAGATATCAAAAATCTGTCATATGACAAAATATTGGTGAAATTATGATCAACAATTTATTAGTTGACAGTTTTTTGATATCTTTTGCATTTACCGAGATATTTAAGCTCAAGGTGTTCTTCAAAATTATTGCTTCAGAGCTCGATTCGCCACAGCAATGTCCTTCTTGATGTCTGCCATTGCCACATACTTCCAATCGGTGAATCGGACAGGACCAACATCGGCGATTTTCTACACTATTGCCAACGTCTTCTACTACTTCTCATATA</canonical>
            <polymorphic>GCTAAACATTTTGAAGATGTTATCACCGGCTCAGTGCCTTGCCATATATGGCGGGTCCACACTTTTGGCGTACATTGAGACGTCAAAGTTCGAGAAGAATCATCATGTTCTGTTGAGTGCTCCATTGGTTATTCTGGCCATGTTGTCATTGGCGACGACGATGAATCCAAAGTAAGTTTTTAGTTTTAGGAAAGTTTAGAAATTGAGGTTTCGAAGTTAATTAAACTGAAGCGTAATTACCGTACTTGTTCTAATAGAAGCCCTCCGGAACCGTCAACTTTGAACTCAATTATCTCAGTTCATACAAGAGCTATCAAAAATAGGTCAACTGTTAAAATGTTTGCAACATTATGATAAACAAAATTATCTGTTGACAAATTTTTTATATCTATTACAGGAACCGAGATAATTTTGATCGAATAATTAACCGCCAATGAGCCGCTGACGGCTGAAAAGTTATTCTATTGATTTTTTGTGTTGTCCATCTGCAAAATCAAAAKTTGCTTTTAAAATTTGGTCCCTTTCTGAAAAATGAAAACTTTGAAAAAGGATTTTTTTTGGGTTTCATAAAACAGACCATTAAACAGAAATTGGAAAACTTCCTAGGCAACATCAAAAATGTATCAACTGATAAACTATTTATCATCTATATAAGCTCAAAGTAGGCGGTCCAGGGTGCCTTCTATTTAGCCTGTACTTTCGCTTTGAGCTCAATTATCTTAGTTCCTATGAGAGATATCAAAAATCTGTCATATGACAAAATATTGGTGAAATTATGATCAACAATTTATTAGTTGACAGTTTTTTGATATCTTTTGCATTTACCGAGATATTTAAGCTCAAGGTGTTCTTCAAAATTATTGCTTCAGAGCTCGATTCGCCACAGCAATGTCCTTCTTGATGTCTGCCATTGCCACATACTTCCAATCGGTGAATCGGACAGGACCAACATCGGCGATTTTCTACACTATTGCCAACGTCTTCTACTACTTCTCATATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>490 376 121 13</canonical_bands>
                <polymorphic_bands>490 376 134</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>200 145 124 78 76 74 71 59 53 31 18 16 15 14 13 13</canonical_bands>
                <polymorphic_bands>200 145 124 89 78 74 71 59 53 31 18 16 15 14 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACGGCTGAAAAGTTATTCTATT</pcr_primer_p1>
		<pcr_primer_p2>ACCGCCTACTTTGAGCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>GACGGCTGAAAAGTTATTCTATTGATTTTTTGTGTTGTCCATCTGCAAAATCAAAATTTGCTTTTAAAATTTGGTCCCTTTCTGAAAAATGAAAACTTTGAAAAAGGATTTTTTTTGGGTTTCATAAAACAGACCATTAAACAGAAATTGGAAAACTTCCTAGGCAACATCAAAAATGTATCAACTGATAAACTATTTATCATCTATATAAGCTCAAAGTAGGCGGT</canonical_amplicon>
		<polymorphic_amplicon>GACGGCTGAAAAGTTATTCTATTGATTTTTTGTGTTGTCCATCTGCAAAATCAAAAKTTGCTTTTAAAATTTGGTCCCTTTCTGAAAAATGAAAACTTTGAAAAAGGATTTTTTTTGGGTTTCATAAAACAGACCATTAAACAGAAATTGGAAAACTTCCTAGGCAACATCAAAAATGTATCAACTGATAAACTATTTATCATCTATATAAGCTCAAAGTAGGCGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32220</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>124901</contig_pos>
        <strand>+</strand>
        <context>TTTATTTTCT[C/T]GTAGTTTCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTGGTCGTTTCGAGAAATTCTTCAAAGAATTTCTGGAAGTTTATTTTCT</left_flank>
        <right_flank>GTAGTTTCTCGAAAGGATATACTGGTCATTCCCCAAAATGTGTTTTTCAC</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAACAATCTGGTGTGTTTTCTAGGTCATTTTAACGTGGTGGCCTAACTTTTGCAAGTTGGGTTTTCTAGGCCAGCATGGTAAATGCCCTAGAGAACACACCAGATGAATACCAGGTCATTTTTTAGACATTTACCGTCGTTGCCTAGAAAAATCAATTTGCAAAAGTTAGGTCATCTCTTTAAATTGGCCTAGAAAGCACACCAGAGGCATGTCAGGGCGGATCTGAGCCATTTTGTCATAGTGGCCTAGAAAATTCAACTTGCAAAAATTCGGCAACAATGTTGAAATTGCCTAAAAACAGACCAGAGGCGTGTCAGGCTATTTCTGGGTCAGTTTGTCATAGTGGCCTAGAAAACTCGACTTGAAAAAGTTCGGCCACCATGTTAACATGACCGAGAAAACACACCAGATGAATATCAGACCAGAAGTTAGGCCACCGTGTTAAAATGTGGTCGTTTCGAGAAATTCTTCAAAGAATTTCTGGAAGTTTATTTTCTTGTAGTTTCTCGAAAGGATATACTGGTCATTCCCCAAAATGTGTTTTTCACTACCAAACCCCTTCAGTAACCCAAACAACTAACCTGGTTTGCTTGAAAATCGCTCTTCTATTCTTCAAAAAGTCTCTAATAGCCTCACGACGCTTGGCAGCAAAAGCAGCCTTCTCCTTATCAGTTCCGCGATTTGGGTAGGCTTTTAAAGCTTCCATGAAATTCTTCGAAAGCTCTGAATCCTTCTTCTTAGCGGCAGCGAGCGACTGTTGCTCTTTTTTCTCAGCAACTGGAAGAGATCTGATGAGTGTGTCTCTTTTGGCAACCTTCAAATGGTTGTATCTTTCACCGAGAGCGCTGGAAGTAACAAAATATTTTATTTGGTGGATTCAAGAATAGCTACTTGAGAAGTGCGTCATTTTGAGCACGCTTGTCTCCCTCTCCATTCTTGAAAACAATGATTTTTCTCTTATCCTCACGATGCTTGGCTTCTTGTGGGCTGGAACATTT</canonical>
            <polymorphic>ATAACAATCTGGTGTGTTTTCTAGGTCATTTTAACGTGGTGGCCTAACTTTTGCAAGTTGGGTTTTCTAGGCCAGCATGGTAAATGCCCTAGAGAACACACCAGATGAATACCAGGTCATTTTTTAGACATTTACCGTCGTTGCCTAGAAAAATCAATTTGCAAAAGTTAGGTCATCTCTTTAAATTGGCCTAGAAAGCACACCAGAGGCATGTCAGGGCGGATCTGAGCCATTTTGTCATAGTGGCCTAGAAAATTCAACTTGCAAAAATTCGGCAACAATGTTGAAATTGCCTAAAAACAGACCAGAGGCGTGTCAGGCTATTTCTGGGTCAGTTTGTCATAGTGGCCTAGAAAACTCGACTTGAAAAAGTTCGGCCACCATGTTAACATGACCGAGAAAACACACCAGATGAATATCAGACCAGAAGTTAGGCCACCGTGTTAAAATGTGGTCGTTTCGAGAAATTCTTCAAAGAATTTCTGGAAGTTTATTTTCTYGTAGTTTCTCGAAAGGATATACTGGTCATTCCCCAAAATGTGTTTTTCACTACCAAACCCCTTCAGTAACCCAAACAACTAACCTGGTTTGCTTGAAAATCGCTCTTCTATTCTTCAAAAAGTCTCTAATAGCCTCACGACGCTTGGCAGCAAAAGCAGCCTTCTCCTTATCAGTTCCGCGATTTGGGTAGGCTTTTAAAGCTTCCATGAAATTCTTCGAAAGCTCTGAATCCTTCTTCTTAGCGGCAGCGAGCGACTGTTGCTCTTTTTTCTCAGCAACTGGAAGAGATCTGATGAGTGTGTCTCTTTTGGCAACCTTCAAATGGTTGTATCTTTCACCGAGAGCGCTGGAAGTAACAAAATATTTTATTTGGTGGATTCAAGAATAGCTACTTGAGAAGTGCGTCATTTTGAGCACGCTTGTCTCCCTCTCCATTCTTGAAAACAATGATTTTTCTCTTATCCTCACGATGCTTGGCTTCTTGTGGGCTGGAACATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTTAAAATGTGGTCGTTTC</pcr_primer_p1>
		<pcr_primer_p2>CTTTAAAAGCCTACCCAAATC</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>GTGTTAAAATGTGGTCGTTTCGAGAAATTCTTCAAAGAATTTCTGGAAGTTTATTTTCTTGTAGTTTCTCGAAAGGATATACTGGTCATTCCCCAAAATGTGTTTTTCACTACCAAACCCCTTCAGTAACCCAAACAACTAACCTGGTTTGCTTGAAAATCGCTCTTCTATTCTTCAAAAAGTCTCTAATAGCCTCACGACGCTTGGCAGCAAAAGCAGCCTTCTCCTTATCAGTTCCGCGATTTGGGTAGGCTTTTAAAG</canonical_amplicon>
		<polymorphic_amplicon>GTGTTAAAATGTGGTCGTTTCGAGAAATTCTTCAAAGAATTTCTGGAAGTTTATTTTCTYGTAGTTTCTCGAAAGGATATACTGGTCATTCCCCAAAATGTGTTTTTCACTACCAAACCCCTTCAGTAACCCAAACAACTAACCTGGTTTGCTTGAAAATCGCTCTTCTATTCTTCAAAAAGTCTCTAATAGCCTCACGACGCTTGGCAGCAAAAGCAGCCTTCTCCTTATCAGTTCCGCGATTTGGGTAGGCTTTTAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32221</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>127054</contig_pos>
        <strand></strand>
        <context>CCAAATGGGC[T/C]CTCTGGATCC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTACTGTGATATTCTGAAATCTCATTTTTCAATTCGATGTCCAAATGGGC</left_flank>
        <right_flank>CTCTGGATCCCCTTATATTGGGTTTCTTTGATTCATGATCACATTCATTA</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGATCTTTTCTTCTCAATCTCCTTTGGAGCCTCCTGCTCTTTAAAAACTATAATAGATCTGTCTTGTTTGATCTTTTTTGGCTCATTCTCATCAAATACAACAATCGTTCTTTTTTGTTCAGCAATTTTCTGCTTGTGAGCATTGATAAGCTCCTTCAAATGGTTTCTCCGAGCCTCTTGGACCGGGAGAGACCTGAAAAGCTTTAAGTACACTTTGAGCTTATTTATCTCGGTTCCTATGAGAGATATCAAAATATTGTCGATTGATAAAATGTAGCTGATAACATGATAAATACTTTATCAGTTGGCACGTTTAAGATATCTCTTCTAAGAACGGAGAAAATTGAGCTCAAAGAGCATAGGGTAAGCTTAGGAGCTGCAAATCTGAAATTTAACCTGATAAGGGTGTCAGCATAGGAAACAGCTAAAACTGTTGAGAAAATAAATAGTACTGTGATATTCTGAAATCTCATTTTTCAATTCGATGTCCAAATGGGCTCTCTGGATCCCCTTATATTGGGTTTCTTTGATTCATGATCACATTCATTATGAAAATTTAAATCAATGAATTATATATGATTACACAGTTAATATGATAATGAGTGTGGGTTGGAAATTTTTGCAAAAAAGGGAAGGAACAAAGCACAGAAAAGTGAAAAATTGGGAGACTTGGCACCATAAACTGGGAAAGGAAAAAATTGAAAATCTAGCGAAGGAGCAAGCGAATTGAGACATAAAATTGAGAAAATTCGGATTCAGATACAATTATTGACGTGCATGTCGTGAAGCTTATGACGACCCTCGTAGATTTGATCCATGATTTCGGTGGTTGATTGTTTGCAGCTGCAAAAAAATTGGGTGAAAAAAATATACATTGGTTTGCCAGTAAACGTCAAAAATGTTCAAAAGTTCAAAAAATCAAAAACTTTTGATTTTTTGAACATTTGATTTTTTGGACTTTAAATTTTGATCAAAATTATCTAGATTCTCGTGAAATAT</canonical>
            <polymorphic>TAGATCTTTTCTTCTCAATCTCCTTTGGAGCCTCCTGCTCTTTAAAAACTATAATAGATCTGTCTTGTTTGATCTTTTTTGGCTCATTCTCATCAAATACAACAATCGTTCTTTTTTGTTCAGCAATTTTCTGCTTGTGAGCATTGATAAGCTCCTTCAAATGGTTTCTCCGAGCCTCTTGGACCGGGAGAGACCTGAAAAGCTTTAAGTACACTTTGAGCTTATTTATCTCGGTTCCTATGAGAGATATCAAAATATTGTCGATTGATAAAATGTAGCTGATAACATGATAAATACTTTATCAGTTGGCACGTTTAAGATATCTCTTCTAAGAACGGAGAAAATTGAGCTCAAAGAGCATAGGGTAAGCTTAGGAGCTGCAAATCTGAAATTTAACCTGATAAGGGTGTCAGCATAGGAAACAGCTAAAACTGTTGAGAAAATAAATAGTACTGTGATATTCTGAAATCTCATTTTTCAATTCGATGTCCAAATGGGCYCTCTGGATCCCCTTATATTGGGTTTCTTTGATTCATGATCACATTCATTATGAAAATTTAAATCAATGAATTATATATGATTACACAGTTAATATGATAATGAGTGTGGGTTGGAAATTTTTGCAAAAAAGGGAAGGAACAAAGCACAGAAAAGTGAAAAATTGGGAGACTTGGCACCATAAACTGGGAAAGGAAAAAATTGAAAATCTAGCGAAGGAGCAAGCGAATTGAGACATAAAATTGAGAAAATTCGGATTCAGATACAATTATTGACGTGCATGTCGTGAAGCTTATGACGACCCTCGTAGATTTGATCCATGATTTCGGTGGTTGATTGTTTGCAGCTGCAAAAAAATTGGGTGAAAAAAATATACATTGGTTTGCCAGTAAACGTCAAAAATGTTCAAAAGTTCAAAAAATCAAAAACTTTTGATTTTTTGAACATTTGATTTTTTGGACTTTAAATTTTGATCAAAATTATCTAGATTCTCGTGAAATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>500 351 149</canonical_bands>
                <polymorphic_bands>649 351</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>500 351 149</canonical_bands>
                <polymorphic_bands>649 351</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>291 156 73 71 69 58 55 52 48 30 28 23 20 18 8</canonical_bands>
                <polymorphic_bands>364 156 71 69 58 55 52 48 30 28 23 20 18 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAGCTAAAACTGTTGAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAGTCTCCCAATTTTTCACTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AACAGCTAAAACTGTTGAGAAAATAAATAGTACTGTGATATTCTGAAATCTCATTTTTCAATTCGATGTCCAAATGGGCTCTCTGGATCCCCTTATATTGGGTTTCTTTGATTCATGATCACATTCATTATGAAAATTTAAATCAATGAATTATATATGATTACACAGTTAATATGATAATGAGTGTGGGTTGGAAATTTTTGCAAAAAAGGGAAGGAACAAAGCACAGAAAAGTGAAAAATTGGGAGACTT</canonical_amplicon>
		<polymorphic_amplicon>AACAGCTAAAACTGTTGAGAAAATAAATAGTACTGTGATATTCTGAAATCTCATTTTTCAATTCGATGTCCAAATGGGCYCTCTGGATCCCCTTATATTGGGTTTCTTTGATTCATGATCACATTCATTATGAAAATTTAAATCAATGAATTATATATGATTACACAGTTAATATGATAATGAGTGTGGGTTGGAAATTTTTGCAAAAAAGGGAAGGAACAAAGCACAGAAAAGTGAAAAATTGGGAGACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32222</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>130354</contig_pos>
        <strand></strand>
        <context>ttatgataaa[C/T]aatttattag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGATATTGAAAATCTGTCAACTAATAAAATATTGGTGATATTATGATAAA</left_flank>
        <right_flank>AATTTATTAGTTGGCAACTTTTTGATATCTTTCGAAGGAACCAAGATAAT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCATGTAATACATGGGGAGGAAGGGGGCTCAAATATAGGCTCGAATAGAGAAATAGGGTTTTGAAAATCAAACAATGTCGTTGGCGAGGAAATTGATGGCAATTAGAAGTATTGGTCAGAGAGAAATTGTATATAGGCAAGGCATAAGAACGATAGAGAAATCAGTTGCGCTTACGGTAGAAGTCCACTCCTTCAACTTTTAGCTTAATTATCTCGATTCTTGTAAATCATCTCGATTCTTGTAAGATATCAAAATATTGGCAACTAATAAAATGTTTTTCATAATATCAGATACATTTTATCAATTCCAATAATGTGAATTTCGAGATTTTAAGTGGTCCTATAAAATTTTGAGCTCTGAAATTCAAAAAATTTCTGAAATTCTCAACAAAATAGAAGTTCACACAAGTCTTCAACTTTGAGCTCAATTATCACAGTTCCTATAATAGATATTGAAAATCTGTCAACTAATAAAATATTGGTGATATTATGATAAACAATTTATTAGTTGGCAACTTTTTGATATCTTTCGAAGGAACCAAGATAATTGAGCCCGAAGTTGCCAGTCTGGGTGGGCTTCTATTATACATAGTGGAGGAAGTACGGTAATTCAAACTTTTTCGAAAATTTTGTAATCAAAAATTTTGGGATTCAGTGATTTTGAGACTCCAAATAGAAAGAATCAGAAGCTCTGAGAATTTCAGACTTATGATCTCAGAATTCAAGCATCTAAAACCCCCGTCACCGTATAATTGCCCAAAATCCAAAATTCAAAACCCAAAAACAAACAGATCCACAAAAAAATCAGCAAAAAAAAGAACGAAACCGGAAAACGGGGTGCCCGAAATTTTTGTTCCGAAAAAAAGCGAAATTTTGTCTTGCTGGCTTGTCGTCGAGTCGTCTCCGACAAGCGATAAATTGGCTACAATTTTTGTGTTAAACGGCGTCGGATATTCTAGAAAACTGAAATGTTGTATTGTAATATTCAACATAGGGTA</canonical>
            <polymorphic>AGTCATGTAATACATGGGGAGGAAGGGGGCTCAAATATAGGCTCGAATAGAGAAATAGGGTTTTGAAAATCAAACAATGTCGTTGGCGAGGAAATTGATGGCAATTAGAAGTATTGGTCAGAGAGAAATTGTATATAGGCAAGGCATAAGAACGATAGAGAAATCAGTTGCGCTTACGGTAGAAGTCCACTCCTTCAACTTTTAGCTTAATTATCTCGATTCTTGTAAATCATCTCGATTCTTGTAAGATATCAAAATATTGGCAACTAATAAAATGTTTTTCATAATATCAGATACATTTTATCAATTCCAATAATGTGAATTTCGAGATTTTAAGTGGTCCTATAAAATTTTGAGCTCTGAAATTCAAAAAATTTCTGAAATTCTCAACAAAATAGAAGTTCACACAAGTCTTCAACTTTGAGCTCAATTATCACAGTTCCTATAATAGATATTGAAAATCTGTCAACTAATAAAATATTGGTGATATTATGATAAAYAATTTATTAGTTGGCAACTTTTTGATATCTTTCGAAGGAACCAAGATAATTGAGCCCGAAGTTGCCAGTCTGGGTGGGCTTCTATTATACATAGTGGAGGAAGTACGGTAATTCAAACTTTTTCGAAAATTTTGTAATCAAAAATTTTGGGATTCAGTGATTTTGAGACTCCAAATAGAAAGAATCAGAAGCTCTGAGAATTTCAGACTTATGATCTCAGAATTCAAGCATCTAAAACCCCCGTCACCGTATAATTGCCCAAAATCCAAAATTCAAAACCCAAAAACAAACAGATCCACAAAAAAATCAGCAAAAAAAAGAACGAAACCGGAAAACGGGGTGCCCGAAATTTTTGTTCCGAAAAAAAGCGAAATTTTGTCTTGCTGGCTTGTCGTCGAGTCGTCTCCGACAAGCGATAAATTGGCTACAATTTTTGTGTTAAACGGCGTCGGATATTCTAGAAAACTGAAATGTTGTATTGTAATATTCAACATAGGGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGCTCTGAAATTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATTACCGTACTTCCTCCACTAT</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>TTGAGCTCTGAAATTCAAAAAATTTCTGAAATTCTCAACAAAATAGAAGTTCACACAAGTCTTCAACTTTGAGCTCAATTATCACAGTTCCTATAATAGATATTGAAAATCTGTCAACTAATAAAATATTGGTGATATTATGATAAACAATTTATTAGTTGGCAACTTTTTGATATCTTTCGAAGGAACCAAGATAATTGAGCCCGAAGTTGCCAGTCTGGGTGGGCTTCTATTATACATAGTGGAGGAAGTACGGTAATT</canonical_amplicon>
		<polymorphic_amplicon>TTGAGCTCTGAAATTCAAAAAATTTCTGAAATTCTCAACAAAATAGAAGTTCACACAAGTCTTCAACTTTGAGCTCAATTATCACAGTTCCTATAATAGATATTGAAAATCTGTCAACTAATAAAATATTGGTGATATTATGATAAAYAATTTATTAGTTGGCAACTTTTTGATATCTTTCGAAGGAACCAAGATAATTGAGCCCGAAGTTGCCAGTCTGGGTGGGCTTCTATTATACATAGTGGAGGAAGTACGGTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32223</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>130478</contig_pos>
        <strand></strand>
        <context>CAAACTTTTT[C/T]SRAAATTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGGGCTTCTATTATACATAGTGGAGGAAGTACGGTAATTCAAACTTTTT</left_flank>
        <right_flank>GAAAATTTTGTAATCAAAAATTTTGGGATTCAGTGATTTTGAGACTCCAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAATTGTATATAGGCAAGGCATAAGAACGATAGAGAAATCAGTTGCGCTTACGGTAGAAGTCCACTCCTTCAACTTTTAGCTTAATTATCTCGATTCTTGTAAATCATCTCGATTCTTGTAAGATATCAAAATATTGGCAACTAATAAAATGTTTTTCATAATATCAGATACATTTTATCAATTCCAATAATGTGAATTTCGAGATTTTAAGTGGTCCTATAAAATTTTGAGCTCTGAAATTCAAAAAATTTCTGAAATTCTCAACAAAATAGAAGTTCACACAAGTCTTCAACTTTGAGCTCAATTATCACAGTTCCTATAATAGATATTGAAAATCTGTCAACTAATAAAATATTGGTGATATTATGATAAACAATTTATTAGTTGGCAACTTTTTGATATCTTTCGAAGGAACCAAGATAATTGAGCCCGAAGTTGCCAGTCTGGGTGGGCTTCTATTATACATAGTGGAGGAAGTACGGTAATTCAAACTTTTTCGAAAATTTTGTAATCAAAAATTTTGGGATTCAGTGATTTTGAGACTCCAAATAGAAAGAATCAGAAGCTCTGAGAATTTCAGACTTATGATCTCAGAATTCAAGCATCTAAAACCCCCGTCACCGTATAATTGCCCAAAATCCAAAATTCAAAACCCAAAAACAAACAGATCCACAAAAAAATCAGCAAAAAAAAGAACGAAACCGGAAAACGGGGTGCCCGAAATTTTTGTTCCGAAAAAAAGCGAAATTTTGTCTTGCTGGCTTGTCGTCGAGTCGTCTCCGACAAGCGATAAATTGGCTACAATTTTTGTGTTAAACGGCGTCGGATATTCTAGAAAACTGAAATGTTGTATTGTAATATTCAACATAGGGTACTCTATATATGGTTCCCCGACCCGTTAACAACCTTCAAACAATGTCAATTCAACTTGACAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA</canonical>
            <polymorphic>GAAATTGTATATAGGCAAGGCATAAGAACGATAGAGAAATCAGTTGCGCTTACGGTAGAAGTCCACTCCTTCAACTTTTAGCTTAATTATCTCGATTCTTGTAAATCATCTCGATTCTTGTAAGATATCAAAATATTGGCAACTAATAAAATGTTTTTCATAATATCAGATACATTTTATCAATTCCAATAATGTGAATTTCGAGATTTTAAGTGGTCCTATAAAATTTTGAGCTCTGAAATTCAAAAAATTTCTGAAATTCTCAACAAAATAGAAGTTCACACAAGTCTTCAACTTTGAGCTCAATTATCACAGTTCCTATAATAGATATTGAAAATCTGTCAACTAATAAAATATTGGTGATATTATGATAAACAATTTATTAGTTGGCAACTTTTTGATATCTTTCGAAGGAACCAAGATAATTGAGCCCGAAGTTGCCAGTCTGGGTGGGCTTCTATTATACATAGTGGAGGAAGTACGGTAATTCAAACTTTTTYGAAAATTTTGTAATCAAAAATTTTGGGATTCAGTGATTTTGAGACTCCAAATAGAAAGAATCAGAAGCTCTGAGAATTTCAGACTTATGATCTCAGAATTCAAGCATCTAAAACCCCCGTCACCGTATAATTGCCCAAAATCCAAAATTCAAAACCCAAAAACAAACAGATCCACAAAAAAATCAGCAAAAAAAAGAACGAAACCGGAAAACGGGGTGCCCGAAATTTTTGTTCCGAAAAAAAGCGAAATTTTGTCTTGCTGGCTTGTCGTCGAGTCGTCTCCGACAAGCGATAAATTGGCTACAATTTTTGTGTTAAACGGCGTCGGATATTCTAGAAAACTGAAATGTTGTATTGTAATATTCAACATAGGGTACTCTATATATGGTTCCCCGACCCGTTAACAACCTTCAAACAATGTCAATTCAACTTGACAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 408 91</canonical_bands>
                <polymorphic_bands>592 408</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>272 228 207 93 91 90 19</canonical_bands>
                <polymorphic_bands>363 228 207 93 90 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCCTATAAAATTTTGAGCTCTG</pcr_primer_p1>
		<pcr_primer_p2>GATTCTTTCTATTTGGAGTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>GTCCTATAAAATTTTGAGCTCTGAAATTCAAAAAATTTCTGAAATTCTCAACAAAATAGAAGTTCACACAAGTCTTCAACTTTGAGCTCAATTATCACAGTTCCTATAATAGATATTGAAAATCTGTCAACTAATAAAATATTGGTGATATTATGATAAACAATTTATTAGTTGGCAACTTTTTGATATCTTTCGAAGGAACCAAGATAATTGAGCCCGAAGTTGCCAGTCTGGGTGGGCTTCTATTATACATAGTGGAGGAAGTACGGTAATTCAAACTTTTTCGAAAATTTTGTAATCAAAAATTTTGGGATTCAGTGATTTTGAGACTCCAAATAGAAAGAATC</canonical_amplicon>
		<polymorphic_amplicon>GTCCTATAAAATTTTGAGCTCTGAAATTCAAAAAATTTCTGAAATTCTCAACAAAATAGAAGTTCACACAAGTCTTCAACTTTGAGCTCAATTATCACAGTTCCTATAATAGATATTGAAAATCTGTCAACTAATAAAATATTGGTGATATTATGATAAACAATTTATTAGTTGGCAACTTTTTGATATCTTTCGAAGGAACCAAGATAATTGAGCCCGAAGTTGCCAGTCTGGGTGGGCTTCTATTATACATAGTGGAGGAAGTACGGTAATTCAAACTTTTTYGAAAATTTTGTAATCAAAAATTTTGGGATTCAGTGATTTTGAGACTCCAAATAGAAAGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32224</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>130479</contig_pos>
        <strand></strand>
        <context>AAACTTTTTY[G/C]RAAATTTTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TGGGCTTCTATTATACATAGTGGAGGAAGTACGGTAATTCAAACTTTTTC</left_flank>
        <right_flank>AAAATTTTGTAATCAAAAATTTTGGGATTCAGTGATTTTGAGACTCCAAA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTGTATATAGGCAAGGCATAAGAACGATAGAGAAATCAGTTGCGCTTACGGTAGAAGTCCACTCCTTCAACTTTTAGCTTAATTATCTCGATTCTTGTAAATCATCTCGATTCTTGTAAGATATCAAAATATTGGCAACTAATAAAATGTTTTTCATAATATCAGATACATTTTATCAATTCCAATAATGTGAATTTCGAGATTTTAAGTGGTCCTATAAAATTTTGAGCTCTGAAATTCAAAAAATTTCTGAAATTCTCAACAAAATAGAAGTTCACACAAGTCTTCAACTTTGAGCTCAATTATCACAGTTCCTATAATAGATATTGAAAATCTGTCAACTAATAAAATATTGGTGATATTATGATAAACAATTTATTAGTTGGCAACTTTTTGATATCTTTCGAAGGAACCAAGATAATTGAGCCCGAAGTTGCCAGTCTGGGTGGGCTTCTATTATACATAGTGGAGGAAGTACGGTAATTCAAACTTTTTCGAAAATTTTGTAATCAAAAATTTTGGGATTCAGTGATTTTGAGACTCCAAATAGAAAGAATCAGAAGCTCTGAGAATTTCAGACTTATGATCTCAGAATTCAAGCATCTAAAACCCCCGTCACCGTATAATTGCCCAAAATCCAAAATTCAAAACCCAAAAACAAACAGATCCACAAAAAAATCAGCAAAAAAAAGAACGAAACCGGAAAACGGGGTGCCCGAAATTTTTGTTCCGAAAAAAAGCGAAATTTTGTCTTGCTGGCTTGTCGTCGAGTCGTCTCCGACAAGCGATAAATTGGCTACAATTTTTGTGTTAAACGGCGTCGGATATTCTAGAAAACTGAAATGTTGTATTGTAATATTCAACATAGGGTACTCTATATATGGTTCCCCGACCCGTTAACAACCTTCAAACAATGTCAATTCAACTTGACAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAA</canonical>
            <polymorphic>AAATTGTATATAGGCAAGGCATAAGAACGATAGAGAAATCAGTTGCGCTTACGGTAGAAGTCCACTCCTTCAACTTTTAGCTTAATTATCTCGATTCTTGTAAATCATCTCGATTCTTGTAAGATATCAAAATATTGGCAACTAATAAAATGTTTTTCATAATATCAGATACATTTTATCAATTCCAATAATGTGAATTTCGAGATTTTAAGTGGTCCTATAAAATTTTGAGCTCTGAAATTCAAAAAATTTCTGAAATTCTCAACAAAATAGAAGTTCACACAAGTCTTCAACTTTGAGCTCAATTATCACAGTTCCTATAATAGATATTGAAAATCTGTCAACTAATAAAATATTGGTGATATTATGATAAACAATTTATTAGTTGGCAACTTTTTGATATCTTTCGAAGGAACCAAGATAATTGAGCCCGAAGTTGCCAGTCTGGGTGGGCTTCTATTATACATAGTGGAGGAAGTACGGTAATTCAAACTTTTTCSAAAATTTTGTAATCAAAAATTTTGGGATTCAGTGATTTTGAGACTCCAAATAGAAAGAATCAGAAGCTCTGAGAATTTCAGACTTATGATCTCAGAATTCAAGCATCTAAAACCCCCGTCACCGTATAATTGCCCAAAATCCAAAATTCAAAACCCAAAAACAAACAGATCCACAAAAAAATCAGCAAAAAAAAGAACGAAACCGGAAAACGGGGTGCCCGAAATTTTTGTTCCGAAAAAAAGCGAAATTTTGTCTTGCTGGCTTGTCGTCGAGTCGTCTCCGACAAGCGATAAATTGGCTACAATTTTTGTGTTAAACGGCGTCGGATATTCTAGAAAACTGAAATGTTGTATTGTAATATTCAACATAGGGTACTCTATATATGGTTCCCCGACCCGTTAACAACCTTCAAACAATGTCAATTCAACTTGACAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 407 91</canonical_bands>
                <polymorphic_bands>593 407</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>272 229 207 92 91 90 19</canonical_bands>
                <polymorphic_bands>363 229 207 92 90 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCCTATAAAATTTTGAGCTCTG</pcr_primer_p1>
		<pcr_primer_p2>GATTCTTTCTATTTGGAGTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>GTCCTATAAAATTTTGAGCTCTGAAATTCAAAAAATTTCTGAAATTCTCAACAAAATAGAAGTTCACACAAGTCTTCAACTTTGAGCTCAATTATCACAGTTCCTATAATAGATATTGAAAATCTGTCAACTAATAAAATATTGGTGATATTATGATAAACAATTTATTAGTTGGCAACTTTTTGATATCTTTCGAAGGAACCAAGATAATTGAGCCCGAAGTTGCCAGTCTGGGTGGGCTTCTATTATACATAGTGGAGGAAGTACGGTAATTCAAACTTTTTCGAAAATTTTGTAATCAAAAATTTTGGGATTCAGTGATTTTGAGACTCCAAATAGAAAGAATC</canonical_amplicon>
		<polymorphic_amplicon>GTCCTATAAAATTTTGAGCTCTGAAATTCAAAAAATTTCTGAAATTCTCAACAAAATAGAAGTTCACACAAGTCTTCAACTTTGAGCTCAATTATCACAGTTCCTATAATAGATATTGAAAATCTGTCAACTAATAAAATATTGGTGATATTATGATAAACAATTTATTAGTTGGCAACTTTTTGATATCTTTCGAAGGAACCAAGATAATTGAGCCCGAAGTTGCCAGTCTGGGTGGGCTTCTATTATACATAGTGGAGGAAGTACGGTAATTCAAACTTTTTCSAAAATTTTGTAATCAAAAATTTTGGGATTCAGTGATTTTGAGACTCCAAATAGAAAGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32225</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>130480</contig_pos>
        <strand></strand>
        <context>AACTTTTTYS[A/G]AAATTTTGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGCTTCTATTATACATAGTGGAGGAAGTACGGTAATTCAAACTTTTTCG</left_flank>
        <right_flank>AAATTTTGTAATCAAAAATTTTGGGATTCAGTGATTTTGAGACTCCAAAT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGTATATAGGCAAGGCATAAGAACGATAGAGAAATCAGTTGCGCTTACGGTAGAAGTCCACTCCTTCAACTTTTAGCTTAATTATCTCGATTCTTGTAAATCATCTCGATTCTTGTAAGATATCAAAATATTGGCAACTAATAAAATGTTTTTCATAATATCAGATACATTTTATCAATTCCAATAATGTGAATTTCGAGATTTTAAGTGGTCCTATAAAATTTTGAGCTCTGAAATTCAAAAAATTTCTGAAATTCTCAACAAAATAGAAGTTCACACAAGTCTTCAACTTTGAGCTCAATTATCACAGTTCCTATAATAGATATTGAAAATCTGTCAACTAATAAAATATTGGTGATATTATGATAAACAATTTATTAGTTGGCAACTTTTTGATATCTTTCGAAGGAACCAAGATAATTGAGCCCGAAGTTGCCAGTCTGGGTGGGCTTCTATTATACATAGTGGAGGAAGTACGGTAATTCAAACTTTTTCGAAAATTTTGTAATCAAAAATTTTGGGATTCAGTGATTTTGAGACTCCAAATAGAAAGAATCAGAAGCTCTGAGAATTTCAGACTTATGATCTCAGAATTCAAGCATCTAAAACCCCCGTCACCGTATAATTGCCCAAAATCCAAAATTCAAAACCCAAAAACAAACAGATCCACAAAAAAATCAGCAAAAAAAAGAACGAAACCGGAAAACGGGGTGCCCGAAATTTTTGTTCCGAAAAAAAGCGAAATTTTGTCTTGCTGGCTTGTCGTCGAGTCGTCTCCGACAAGCGATAAATTGGCTACAATTTTTGTGTTAAACGGCGTCGGATATTCTAGAAAACTGAAATGTTGTATTGTAATATTCAACATAGGGTACTCTATATATGGTTCCCCGACCCGTTAACAACCTTCAAACAATGTCAATTCAACTTGACAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAA</canonical>
            <polymorphic>AATTGTATATAGGCAAGGCATAAGAACGATAGAGAAATCAGTTGCGCTTACGGTAGAAGTCCACTCCTTCAACTTTTAGCTTAATTATCTCGATTCTTGTAAATCATCTCGATTCTTGTAAGATATCAAAATATTGGCAACTAATAAAATGTTTTTCATAATATCAGATACATTTTATCAATTCCAATAATGTGAATTTCGAGATTTTAAGTGGTCCTATAAAATTTTGAGCTCTGAAATTCAAAAAATTTCTGAAATTCTCAACAAAATAGAAGTTCACACAAGTCTTCAACTTTGAGCTCAATTATCACAGTTCCTATAATAGATATTGAAAATCTGTCAACTAATAAAATATTGGTGATATTATGATAAACAATTTATTAGTTGGCAACTTTTTGATATCTTTCGAAGGAACCAAGATAATTGAGCCCGAAGTTGCCAGTCTGGGTGGGCTTCTATTATACATAGTGGAGGAAGTACGGTAATTCAAACTTTTTCGRAAATTTTGTAATCAAAAATTTTGGGATTCAGTGATTTTGAGACTCCAAATAGAAAGAATCAGAAGCTCTGAGAATTTCAGACTTATGATCTCAGAATTCAAGCATCTAAAACCCCCGTCACCGTATAATTGCCCAAAATCCAAAATTCAAAACCCAAAAACAAACAGATCCACAAAAAAATCAGCAAAAAAAAGAACGAAACCGGAAAACGGGGTGCCCGAAATTTTTGTTCCGAAAAAAAGCGAAATTTTGTCTTGCTGGCTTGTCGTCGAGTCGTCTCCGACAAGCGATAAATTGGCTACAATTTTTGTGTTAAACGGCGTCGGATATTCTAGAAAACTGAAATGTTGTATTGTAATATTCAACATAGGGTACTCTATATATGGTTCCCCGACCCGTTAACAACCTTCAAACAATGTCAATTCAACTTGACAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>503 406 91</canonical_bands>
                <polymorphic_bands>594 406</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>272 230 207 91 91 90 19</canonical_bands>
                <polymorphic_bands>363 230 207 91 90 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCCTATAAAATTTTGAGCTCTG</pcr_primer_p1>
		<pcr_primer_p2>GATTCTTTCTATTTGGAGTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>GTCCTATAAAATTTTGAGCTCTGAAATTCAAAAAATTTCTGAAATTCTCAACAAAATAGAAGTTCACACAAGTCTTCAACTTTGAGCTCAATTATCACAGTTCCTATAATAGATATTGAAAATCTGTCAACTAATAAAATATTGGTGATATTATGATAAACAATTTATTAGTTGGCAACTTTTTGATATCTTTCGAAGGAACCAAGATAATTGAGCCCGAAGTTGCCAGTCTGGGTGGGCTTCTATTATACATAGTGGAGGAAGTACGGTAATTCAAACTTTTTCGAAAATTTTGTAATCAAAAATTTTGGGATTCAGTGATTTTGAGACTCCAAATAGAAAGAATC</canonical_amplicon>
		<polymorphic_amplicon>GTCCTATAAAATTTTGAGCTCTGAAATTCAAAAAATTTCTGAAATTCTCAACAAAATAGAAGTTCACACAAGTCTTCAACTTTGAGCTCAATTATCACAGTTCCTATAATAGATATTGAAAATCTGTCAACTAATAAAATATTGGTGATATTATGATAAACAATTTATTAGTTGGCAACTTTTTGATATCTTTCGAAGGAACCAAGATAATTGAGCCCGAAGTTGCCAGTCTGGGTGGGCTTCTATTATACATAGTGGAGGAAGTACGGTAATTCAAACTTTTTCGRAAATTTTGTAATCAAAAATTTTGGGATTCAGTGATTTTGAGACTCCAAATAGAAAGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32226</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>130651</contig_pos>
        <strand></strand>
        <context>CAAACAGATC[C/T]ACAAAAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGTATAATTGCCCAAAATCCAAAATTCAAAACCCAAAAACAAACAGATC</left_flank>
        <right_flank>ACAAAAAAATCAGCAAAAAAAAGAACGAAACCGGAAAACGGGGTGCCCGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTATCAATTCCAATAATGTGAATTTCGAGATTTTAAGTGGTCCTATAAAATTTTGAGCTCTGAAATTCAAAAAATTTCTGAAATTCTCAACAAAATAGAAGTTCACACAAGTCTTCAACTTTGAGCTCAATTATCACAGTTCCTATAATAGATATTGAAAATCTGTCAACTAATAAAATATTGGTGATATTATGATAAACAATTTATTAGTTGGCAACTTTTTGATATCTTTCGAAGGAACCAAGATAATTGAGCCCGAAGTTGCCAGTCTGGGTGGGCTTCTATTATACATAGTGGAGGAAGTACGGTAATTCAAACTTTTTCGAAAATTTTGTAATCAAAAATTTTGGGATTCAGTGATTTTGAGACTCCAAATAGAAAGAATCAGAAGCTCTGAGAATTTCAGACTTATGATCTCAGAATTCAAGCATCTAAAACCCCCGTCACCGTATAATTGCCCAAAATCCAAAATTCAAAACCCAAAAACAAACAGATCCACAAAAAAATCAGCAAAAAAAAGAACGAAACCGGAAAACGGGGTGCCCGAAATTTTTGTTCCGAAAAAAAGCGAAATTTTGTCTTGCTGGCTTGTCGTCGAGTCGTCTCCGACAAGCGATAAATTGGCTACAATTTTTGTGTTAAACGGCGTCGGATATTCTAGAAAACTGAAATGTTGTATTGTAATATTCAACATAGGGTACTCTATATATGGTTCCCCGACCCGTTAACAACCTTCAAACAATGTCAATTCAACTTGACAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAATGTGTGGGGCCAATTATCTGGGTAGGGTGTCGGATTCTGAATCTATTGCCATCCAGTTATATCGCGACCGCCAAATGACCGTATCACGATCAGAACGTGCGAAAAATGATGATTGAACCTTGAAAAGTAAAAAAGTAGGTTAGCCTTTCAACAAAAGATAAACGAAAAAGA</canonical>
            <polymorphic>ATTTTATCAATTCCAATAATGTGAATTTCGAGATTTTAAGTGGTCCTATAAAATTTTGAGCTCTGAAATTCAAAAAATTTCTGAAATTCTCAACAAAATAGAAGTTCACACAAGTCTTCAACTTTGAGCTCAATTATCACAGTTCCTATAATAGATATTGAAAATCTGTCAACTAATAAAATATTGGTGATATTATGATAAACAATTTATTAGTTGGCAACTTTTTGATATCTTTCGAAGGAACCAAGATAATTGAGCCCGAAGTTGCCAGTCTGGGTGGGCTTCTATTATACATAGTGGAGGAAGTACGGTAATTCAAACTTTTTCGAAAATTTTGTAATCAAAAATTTTGGGATTCAGTGATTTTGAGACTCCAAATAGAAAGAATCAGAAGCTCTGAGAATTTCAGACTTATGATCTCAGAATTCAAGCATCTAAAACCCCCGTCACCGTATAATTGCCCAAAATCCAAAATTCAAAACCCAAAAACAAACAGATCYACAAAAAAATCAGCAAAAAAAAGAACGAAACCGGAAAACGGGGTGCCCGAAATTTTTGTTCCGAAAAAAAGCGAAATTTTGTCTTGCTGGCTTGTCGTCGAGTCGTCTCCGACAAGCGATAAATTGGCTACAATTTTTGTGTTAAACGGCGTCGGATATTCTAGAAAACTGAAATGTTGTATTGTAATATTCAACATAGGGTACTCTATATATGGTTCCCCGACCCGTTAACAACCTTCAAACAATGTCAATTCAACTTGACAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAATGTGTGGGGCCAATTATCTGGGTAGGGTGTCGGATTCTGAATCTATTGCCATCCAGTTATATCGCGACCGCCAAATGACCGTATCACGATCAGAACGTGCGAAAAATGATGATTGAACCTTGAAAAGTAAAAAAGTAGGTTAGCCTTTCAACAAAAGATAAACGAAAAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>192 96 90 87 72 66 63 57 52 50 44 29 23 23 20 19 13 2 2</canonical_bands>
                <polymorphic_bands>192 96 96 90 87 72 66 63 57 50 29 23 23 20 19 13 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCTCAGAATTCAAGCATCTAA</pcr_primer_p1>
		<pcr_primer_p2>GCCGTTTAACACAAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>GATCTCAGAATTCAAGCATCTAAAACCCCCGTCACCGTATAATTGCCCAAAATCCAAAATTCAAAACCCAAAAACAAACAGATCCACAAAAAAATCAGCAAAAAAAAGAACGAAACCGGAAAACGGGGTGCCCGAAATTTTTGTTCCGAAAAAAAGCGAAATTTTGTCTTGCTGGCTTGTCGTCGAGTCGTCTCCGACAAGCGATAAATTGGCTACAATTTTTGTGTTAAACGGC</canonical_amplicon>
		<polymorphic_amplicon>GATCTCAGAATTCAAGCATCTAAAACCCCCGTCACCGTATAATTGCCCAAAATCCAAAATTCAAAACCCAAAAACAAACAGATCYACAAAAAAATCAGCAAAAAAAAGAACGAAACCGGAAAACGGGGTGCCCGAAATTTTTGTTCCGAAAAAAAGCGAAATTTTGTCTTGCTGGCTTGTCGTCGAGTCGTCTCCGACAAGCGATAAATTGGCTACAATTTTTGTGTTAAACGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32227</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>130761</contig_pos>
        <strand>+</strand>
        <context>GAGTCGTCTC[C/T]GACAAGCGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCGAAAAAAAGCGAAATTTTGTCTTGCTGGCTTGTCGTCGAGTCGTCTC</left_flank>
        <right_flank>GACAAGCGATAAATTGGCTACAATTTTTGTGTTAAACGGCGTCGGATATT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGTCTTCAACTTTGAGCTCAATTATCACAGTTCCTATAATAGATATTGAAAATCTGTCAACTAATAAAATATTGGTGATATTATGATAAACAATTTATTAGTTGGCAACTTTTTGATATCTTTCGAAGGAACCAAGATAATTGAGCCCGAAGTTGCCAGTCTGGGTGGGCTTCTATTATACATAGTGGAGGAAGTACGGTAATTCAAACTTTTTCGAAAATTTTGTAATCAAAAATTTTGGGATTCAGTGATTTTGAGACTCCAAATAGAAAGAATCAGAAGCTCTGAGAATTTCAGACTTATGATCTCAGAATTCAAGCATCTAAAACCCCCGTCACCGTATAATTGCCCAAAATCCAAAATTCAAAACCCAAAAACAAACAGATCCACAAAAAAATCAGCAAAAAAAAGAACGAAACCGGAAAACGGGGTGCCCGAAATTTTTGTTCCGAAAAAAAGCGAAATTTTGTCTTGCTGGCTTGTCGTCGAGTCGTCTCCGACAAGCGATAAATTGGCTACAATTTTTGTGTTAAACGGCGTCGGATATTCTAGAAAACTGAAATGTTGTATTGTAATATTCAACATAGGGTACTCTATATATGGTTCCCCGACCCGTTAACAACCTTCAAACAATGTCAATTCAACTTGACAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAATGTGTGGGGCCAATTATCTGGGTAGGGTGTCGGATTCTGAATCTATTGCCATCCAGTTATATCGCGACCGCCAAATGACCGTATCACGATCAGAACGTGCGAAAAATGATGATTGAACCTTGAAAAGTAAAAAAGTAGGTTAGCCTTTCAACAAAAGATAAACGAAAAAGAAAAATATTGGAAAAGTAAATTTTGGATTTCGATGGATCTCGATGGATTGAGCACACAAATTGTGTGTTTGTGTTCACCCAGTTTTTTGAGATCCGTTGAAAAAAGTATGT</canonical>
            <polymorphic>CAAGTCTTCAACTTTGAGCTCAATTATCACAGTTCCTATAATAGATATTGAAAATCTGTCAACTAATAAAATATTGGTGATATTATGATAAACAATTTATTAGTTGGCAACTTTTTGATATCTTTCGAAGGAACCAAGATAATTGAGCCCGAAGTTGCCAGTCTGGGTGGGCTTCTATTATACATAGTGGAGGAAGTACGGTAATTCAAACTTTTTCGAAAATTTTGTAATCAAAAATTTTGGGATTCAGTGATTTTGAGACTCCAAATAGAAAGAATCAGAAGCTCTGAGAATTTCAGACTTATGATCTCAGAATTCAAGCATCTAAAACCCCCGTCACCGTATAATTGCCCAAAATCCAAAATTCAAAACCCAAAAACAAACAGATCCACAAAAAAATCAGCAAAAAAAAGAACGAAACCGGAAAACGGGGTGCCCGAAATTTTTGTTCCGAAAAAAAGCGAAATTTTGTCTTGCTGGCTTGTCGTCGAGTCGTCTCYGACAAGCGATAAATTGGCTACAATTTTTGTGTTAAACGGCGTCGGATATTCTAGAAAACTGAAATGTTGTATTGTAATATTCAACATAGGGTACTCTATATATGGTTCCCCGACCCGTTAACAACCTTCAAACAATGTCAATTCAACTTGACAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAATGTGTGGGGCCAATTATCTGGGTAGGGTGTCGGATTCTGAATCTATTGCCATCCAGTTATATCGCGACCGCCAAATGACCGTATCACGATCAGAACGTGCGAAAAATGATGATTGAACCTTGAAAAGTAAAAAAGTAGGTTAGCCTTTCAACAAAAGATAAACGAAAAAGAAAAATATTGGAAAAGTAAATTTTGGATTTCGATGGATCTCGATGGATTGAGCACACAAATTGTGTGTTTGTGTTCACCCAGTTTTTTGAGATCCGTTGAAAAAAGTATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCGTATAATTGCCCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTGAATATTACAATACAACATTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACCGTATAATTGCCCAAAATCCAAAATTCAAAACCCAAAAACAAACAGATCCACAAAAAAATCAGCAAAAAAAAGAACGAAACCGGAAAACGGGGTGCCCGAAATTTTTGTTCCGAAAAAAAGCGAAATTTTGTCTTGCTGGCTTGTCGTCGAGTCGTCTCCGACAAGCGATAAATTGGCTACAATTTTTGTGTTAAACGGCGTCGGATATTCTAGAAAACTGAAATGTTGTATTGTAATATTCAA</canonical_amplicon>
		<polymorphic_amplicon>ACCGTATAATTGCCCAAAATCCAAAATTCAAAACCCAAAAACAAACAGATCCACAAAAAAATCAGCAAAAAAAAGAACGAAACCGGAAAACGGGGTGCCCGAAATTTTTGTTCCGAAAAAAAGCGAAATTTTGTCTTGCTGGCTTGTCGTCGAGTCGTCTCYGACAAGCGATAAATTGGCTACAATTTTTGTGTTAAACGGCGTCGGATATTCTAGAAAACTGAAATGTTGTATTGTAATATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32228</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>130779</contig_pos>
        <strand>+</strand>
        <context>GATAAATTGG[C/T]TACAATTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGTCTTGCTGGCTTGTCGTCGAGTCGTCTCCGACAAGCGATAAATTGG</left_flank>
        <right_flank>TACAATTTTTGTGTTAAACGGCGTCGGATATTCTAGAAAACTGAAATGTT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCAATTATCACAGTTCCTATAATAGATATTGAAAATCTGTCAACTAATAAAATATTGGTGATATTATGATAAACAATTTATTAGTTGGCAACTTTTTGATATCTTTCGAAGGAACCAAGATAATTGAGCCCGAAGTTGCCAGTCTGGGTGGGCTTCTATTATACATAGTGGAGGAAGTACGGTAATTCAAACTTTTTCGAAAATTTTGTAATCAAAAATTTTGGGATTCAGTGATTTTGAGACTCCAAATAGAAAGAATCAGAAGCTCTGAGAATTTCAGACTTATGATCTCAGAATTCAAGCATCTAAAACCCCCGTCACCGTATAATTGCCCAAAATCCAAAATTCAAAACCCAAAAACAAACAGATCCACAAAAAAATCAGCAAAAAAAAGAACGAAACCGGAAAACGGGGTGCCCGAAATTTTTGTTCCGAAAAAAAGCGAAATTTTGTCTTGCTGGCTTGTCGTCGAGTCGTCTCCGACAAGCGATAAATTGGCTACAATTTTTGTGTTAAACGGCGTCGGATATTCTAGAAAACTGAAATGTTGTATTGTAATATTCAACATAGGGTACTCTATATATGGTTCCCCGACCCGTTAACAACCTTCAAACAATGTCAATTCAACTTGACAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAATGTGTGGGGCCAATTATCTGGGTAGGGTGTCGGATTCTGAATCTATTGCCATCCAGTTATATCGCGACCGCCAAATGACCGTATCACGATCAGAACGTGCGAAAAATGATGATTGAACCTTGAAAAGTAAAAAAGTAGGTTAGCCTTTCAACAAAAGATAAACGAAAAAGAAAAATATTGGAAAAGTAAATTTTGGATTTCGATGGATCTCGATGGATTGAGCACACAAATTGTGTGTTTGTGTTCACCCAGTTTTTTGAGATCCGTTGAAAAAAGTATGTTTGTTTGAATTGAATTTT</canonical>
            <polymorphic>CTCAATTATCACAGTTCCTATAATAGATATTGAAAATCTGTCAACTAATAAAATATTGGTGATATTATGATAAACAATTTATTAGTTGGCAACTTTTTGATATCTTTCGAAGGAACCAAGATAATTGAGCCCGAAGTTGCCAGTCTGGGTGGGCTTCTATTATACATAGTGGAGGAAGTACGGTAATTCAAACTTTTTCGAAAATTTTGTAATCAAAAATTTTGGGATTCAGTGATTTTGAGACTCCAAATAGAAAGAATCAGAAGCTCTGAGAATTTCAGACTTATGATCTCAGAATTCAAGCATCTAAAACCCCCGTCACCGTATAATTGCCCAAAATCCAAAATTCAAAACCCAAAAACAAACAGATCCACAAAAAAATCAGCAAAAAAAAGAACGAAACCGGAAAACGGGGTGCCCGAAATTTTTGTTCCGAAAAAAAGCGAAATTTTGTCTTGCTGGCTTGTCGTCGAGTCGTCTCCGACAAGCGATAAATTGGYTACAATTTTTGTGTTAAACGGCGTCGGATATTCTAGAAAACTGAAATGTTGTATTGTAATATTCAACATAGGGTACTCTATATATGGTTCCCCGACCCGTTAACAACCTTCAAACAATGTCAATTCAACTTGACAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAATGTGTGGGGCCAATTATCTGGGTAGGGTGTCGGATTCTGAATCTATTGCCATCCAGTTATATCGCGACCGCCAAATGACCGTATCACGATCAGAACGTGCGAAAAATGATGATTGAACCTTGAAAAGTAAAAAAGTAGGTTAGCCTTTCAACAAAAGATAAACGAAAAAGAAAAATATTGGAAAAGTAAATTTTGGATTTCGATGGATCTCGATGGATTGAGCACACAAATTGTGTGTTTGTGTTCACCCAGTTTTTTGAGATCCGTTGAAAAAAGTATGTTTGTTTGAATTGAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>211 196 156 134 129 113 37 24</canonical_bands>
                <polymorphic_bands>248 196 156 134 129 113 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCGTATAATTGCCCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTGAATATTACAATACAACATTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACCGTATAATTGCCCAAAATCCAAAATTCAAAACCCAAAAACAAACAGATCCACAAAAAAATCAGCAAAAAAAAGAACGAAACCGGAAAACGGGGTGCCCGAAATTTTTGTTCCGAAAAAAAGCGAAATTTTGTCTTGCTGGCTTGTCGTCGAGTCGTCTCCGACAAGCGATAAATTGGCTACAATTTTTGTGTTAAACGGCGTCGGATATTCTAGAAAACTGAAATGTTGTATTGTAATATTCAA</canonical_amplicon>
		<polymorphic_amplicon>ACCGTATAATTGCCCAAAATCCAAAATTCAAAACCCAAAAACAAACAGATCCACAAAAAAATCAGCAAAAAAAAGAACGAAACCGGAAAACGGGGTGCCCGAAATTTTTGTTCCGAAAAAAAGCGAAATTTTGTCTTGCTGGCTTGTCGTCGAGTCGTCTCCGACAAGCGATAAATTGGYTACAATTTTTGTGTTAAACGGCGTCGGATATTCTAGAAAACTGAAATGTTGTATTGTAATATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32229</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>153331</contig_pos>
        <strand>+</strand>
        <context>ATGATATAAC[C/T]TTTTTATAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATAACTGGCTTTGAATACTCGCGGATTTTGAACTACTAATGATATAAC</left_flank>
        <right_flank>TTTTTATAGATCAATGAAAATTTTAAAATGTTTATCTTCGATTTTTTTAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAGTTGAAAGCTAGGAGTCCTCCTAGAGTGACCCTCCTAACTTTCAAACTTGGGGCACATTATCTCGGTTTCTGTGAGAGTTATCAAAACGTGGTCAACTAAAAAAAAATATTGGTGATATTATGATAAACATTTTATCTGTTGACCGCTTTTTTATATCTCTTACAGGAACATAGATATCTGGGCTAAATTTGACTGTTCGGGTGGCACTCTAACAGAGTGTTTACGGTATTCAATAAAATCAAAATTTCAGTCTGCAAAAGGAGTCGTTGTCCACAAAATTTGTCCAAATTCTGAGCATAATATTCTGGTCCAGCGAATCGATGTTCTTCAGCGCCAACGCGATATTCTTGTTGATAGTGTAAGGAGTCAAAAGTTGGTAGTCATCGATTTGGATTCAAAATTTTCAGATCACTCAACGCGACGCTGGCTCGGAGAACACCATCAAATAACTGGCTTTGAATACTCGCGGATTTTGAACTACTAATGATATAACCTTTTTATAGATCAATGAAAATTTTAAAATGTTTATCTTCGATTTTTTTAATACCCAGTTTTTCAACTTGATTTTTTTATTCCTATTCTTTCACTTCGATTTTTTGCCCCCATTTTTTCACTTCAATTTTTTTGCTCTTAATTTTTCACCTTGATTTTTTTGTTCCCAATTTTTCACTTCGATTTTTTGGCCCCCATTTTTTCACATCTTTTTTTTGTTCCCAATTTTTCACTTCGATTTTTTTGTTCCGAATTTTTCACTTCGATTTTTTGGCCCCCTATTTTTCACTTCTATTTTTTTTCCCAATTTTTCACTTCGATTTTGAAATTCTCAGTTTTATTTAGAAAAAAATTGATTATCTAATAAAAAATTTAAATTCAAAAACTTGTGTTTCAATTGAAAAATCGTTAAAAACTAAAGTGGCTAGGGAGGAAGAGGACTTTGGAAATTAGTTTTTGTCCTAATTTCCCAAATTGTTGATTGACACTTGAATTTTCTAAT</canonical>
            <polymorphic>TCAAAGTTGAAAGCTAGGAGTCCTCCTAGAGTGACCCTCCTAACTTTCAAACTTGGGGCACATTATCTCGGTTTCTGTGAGAGTTATCAAAACGTGGTCAACTAAAAAAAAATATTGGTGATATTATGATAAACATTTTATCTGTTGACCGCTTTTTTATATCTCTTACAGGAACATAGATATCTGGGCTAAATTTGACTGTTCGGGTGGCACTCTAACAGAGTGTTTACGGTATTCAATAAAATCAAAATTTCAGTCTGCAAAAGGAGTCGTTGTCCACAAAATTTGTCCAAATTCTGAGCATAATATTCTGGTCCAGCGAATCGATGTTCTTCAGCGCCAACGCGATATTCTTGTTGATAGTGTAAGGAGTCAAAAGTTGGTAGTCATCGATTTGGATTCAAAATTTTCAGATCACTCAACGCGACGCTGGCTCGGAGAACACCATCAAATAACTGGCTTTGAATACTCGCGGATTTTGAACTACTAATGATATAACYTTTTTATAGATCAATGAAAATTTTAAAATGTTTATCTTCGATTTTTTTAATACCCAGTTTTTCAACTTGATTTTTTTATTCCTATTCTTTCACTTCGATTTTTTGCCCCCATTTTTTCACTTCAATTTTTTTGCTCTTAATTTTTCACCTTGATTTTTTTGTTCCCAATTTTTCACTTCGATTTTTTGGCCCCCATTTTTTCACATCTTTTTTTTGTTCCCAATTTTTCACTTCGATTTTTTTGTTCCGAATTTTTCACTTCGATTTTTTGGCCCCCTATTTTTCACTTCTATTTTTTTTCCCAATTTTTCACTTCGATTTTGAAATTCTCAGTTTTATTTAGAAAAAAATTGATTATCTAATAAAAAATTTAAATTCAAAAACTTGTGTTTCAATTGAAAAATCGTTAAAAACTAAAGTGGCTAGGGAGGAAGAGGACTTTGGAAATTAGTTTTTGTCCTAATTTCCCAAATTGTTGATTGACACTTGAATTTTCTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGTTGATAGTGTAAGGAGTCAA</pcr_primer_p1>
		<pcr_primer_p2>TCGAAGTGAAAGAATAGGAATAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTTGTTGATAGTGTAAGGAGTCAAAAGTTGGTAGTCATCGATTTGGATTCAAAATTTTCAGATCACTCAACGCGACGCTGGCTCGGAGAACACCATCAAATAACTGGCTTTGAATACTCGCGGATTTTGAACTACTAATGATATAACCTTTTTATAGATCAATGAAAATTTTAAAATGTTTATCTTCGATTTTTTTAATACCCAGTTTTTCAACTTGATTTTTTTATTCCTATTCTTTCACTTCGA</canonical_amplicon>
		<polymorphic_amplicon>CTTGTTGATAGTGTAAGGAGTCAAAAGTTGGTAGTCATCGATTTGGATTCAAAATTTTCAGATCACTCAACGCGACGCTGGCTCGGAGAACACCATCAAATAACTGGCTTTGAATACTCGCGGATTTTGAACTACTAATGATATAACYTTTTTATAGATCAATGAAAATTTTAAAATGTTTATCTTCGATTTTTTTAATACCCAGTTTTTCAACTTGATTTTTTTATTCCTATTCTTTCACTTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32230</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>153468</contig_pos>
        <strand></strand>
        <context>TTTTTTGCTC[T/C]YAATTTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTTTCACTTCGATTTTTTGCCCCCATTTTTTCACTTCAATTTTTTTGCTC</left_flank>
        <right_flank>TAATTTTTCACCTTGATTTTTTTGTTCCCAATTTTTCACTTCGATTTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATCTGTTGACCGCTTTTTTATATCTCTTACAGGAACATAGATATCTGGGCTAAATTTGACTGTTCGGGTGGCACTCTAACAGAGTGTTTACGGTATTCAATAAAATCAAAATTTCAGTCTGCAAAAGGAGTCGTTGTCCACAAAATTTGTCCAAATTCTGAGCATAATATTCTGGTCCAGCGAATCGATGTTCTTCAGCGCCAACGCGATATTCTTGTTGATAGTGTAAGGAGTCAAAAGTTGGTAGTCATCGATTTGGATTCAAAATTTTCAGATCACTCAACGCGACGCTGGCTCGGAGAACACCATCAAATAACTGGCTTTGAATACTCGCGGATTTTGAACTACTAATGATATAACCTTTTTATAGATCAATGAAAATTTTAAAATGTTTATCTTCGATTTTTTTAATACCCAGTTTTTCAACTTGATTTTTTTATTCCTATTCTTTCACTTCGATTTTTTGCCCCCATTTTTTCACTTCAATTTTTTTGCTCTTAATTTTTCACCTTGATTTTTTTGTTCCCAATTTTTCACTTCGATTTTTTGGCCCCCATTTTTTCACATCTTTTTTTTGTTCCCAATTTTTCACTTCGATTTTTTTGTTCCGAATTTTTCACTTCGATTTTTTGGCCCCCTATTTTTCACTTCTATTTTTTTTCCCAATTTTTCACTTCGATTTTGAAATTCTCAGTTTTATTTAGAAAAAAATTGATTATCTAATAAAAAATTTAAATTCAAAAACTTGTGTTTCAATTGAAAAATCGTTAAAAACTAAAGTGGCTAGGGAGGAAGAGGACTTTGGAAATTAGTTTTTGTCCTAATTTCCCAAATTGTTGATTGACACTTGAATTTTCTAATTTCCCGCAAACCAACTGGACCAAAAAAATGTGAATATTATAAAAAGAAAAATAAAAATAGAAATCTTCATAAAGACAATTGCCATTTTGACATGTATCTCAGTTCAATTCAAATATCAAATCTCATGGTGGATGGAG</canonical>
            <polymorphic>TTATCTGTTGACCGCTTTTTTATATCTCTTACAGGAACATAGATATCTGGGCTAAATTTGACTGTTCGGGTGGCACTCTAACAGAGTGTTTACGGTATTCAATAAAATCAAAATTTCAGTCTGCAAAAGGAGTCGTTGTCCACAAAATTTGTCCAAATTCTGAGCATAATATTCTGGTCCAGCGAATCGATGTTCTTCAGCGCCAACGCGATATTCTTGTTGATAGTGTAAGGAGTCAAAAGTTGGTAGTCATCGATTTGGATTCAAAATTTTCAGATCACTCAACGCGACGCTGGCTCGGAGAACACCATCAAATAACTGGCTTTGAATACTCGCGGATTTTGAACTACTAATGATATAACCTTTTTATAGATCAATGAAAATTTTAAAATGTTTATCTTCGATTTTTTTAATACCCAGTTTTTCAACTTGATTTTTTTATTCCTATTCTTTCACTTCGATTTTTTGCCCCCATTTTTTCACTTCAATTTTTTTGCTCYTAATTTTTCACCTTGATTTTTTTGTTCCCAATTTTTCACTTCGATTTTTTGGCCCCCATTTTTTCACATCTTTTTTTTGTTCCCAATTTTTCACTTCGATTTTTTTGTTCCGAATTTTTCACTTCGATTTTTTGGCCCCCTATTTTTCACTTCTATTTTTTTTCCCAATTTTTCACTTCGATTTTGAAATTCTCAGTTTTATTTAGAAAAAAATTGATTATCTAATAAAAAATTTAAATTCAAAAACTTGTGTTTCAATTGAAAAATCGTTAAAAACTAAAGTGGCTAGGGAGGAAGAGGACTTTGGAAATTAGTTTTTGTCCTAATTTCCCAAATTGTTGATTGACACTTGAATTTTCTAATTTCCCGCAAACCAACTGGACCAAAAAAATGTGAATATTATAAAAAGAAAAATAAAAATAGAAATCTTCATAAAGACAATTGCCATTTTGACATGTATCTCAGTTCAATTCAAATATCAAATCTCATGGTGGATGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>386 234 230 90 36 24</canonical_bands>
                <polymorphic_bands>386 324 230 36 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGGATTTTGAACTACTAATGA</pcr_primer_p1>
		<pcr_primer_p2>TGAAAAATTGGGAACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>GCGGATTTTGAACTACTAATGATATAACCTTTTTATAGATCAATGAAAATTTTAAAATGTTTATCTTCGATTTTTTTAATACCCAGTTTTTCAACTTGATTTTTTTATTCCTATTCTTTCACTTCGATTTTTTGCCCCCATTTTTTCACTTCAATTTTTTTGCTCTTAATTTTTCACCTTGATTTTTTTGTTCCCAATTTTTCA</canonical_amplicon>
		<polymorphic_amplicon>GCGGATTTTGAACTACTAATGATATAACCTTTTTATAGATCAATGAAAATTTTAAAATGTTTATCTTCGATTTTTTTAATACCCAGTTTTTCAACTTGATTTTTTTATTCCTATTCTTTCACTTCGATTTTTTGCCCCCATTTTTTCACTTCAATTTTTTTGCTCYTAATTTTTCACCTTGATTTTTTTGTTCCCAATTTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32231</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>153469</contig_pos>
        <strand></strand>
        <context>TTTTTGCTCY[T/C]AATTTTTCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTCACTTCGATTTTTTGCCCCCATTTTTTCACTTCAATTTTTTTGCTCT</left_flank>
        <right_flank>AATTTTTCACCTTGATTTTTTTGTTCCCAATTTTTCACTTCGATTTTTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCTGTTGACCGCTTTTTTATATCTCTTACAGGAACATAGATATCTGGGCTAAATTTGACTGTTCGGGTGGCACTCTAACAGAGTGTTTACGGTATTCAATAAAATCAAAATTTCAGTCTGCAAAAGGAGTCGTTGTCCACAAAATTTGTCCAAATTCTGAGCATAATATTCTGGTCCAGCGAATCGATGTTCTTCAGCGCCAACGCGATATTCTTGTTGATAGTGTAAGGAGTCAAAAGTTGGTAGTCATCGATTTGGATTCAAAATTTTCAGATCACTCAACGCGACGCTGGCTCGGAGAACACCATCAAATAACTGGCTTTGAATACTCGCGGATTTTGAACTACTAATGATATAACCTTTTTATAGATCAATGAAAATTTTAAAATGTTTATCTTCGATTTTTTTAATACCCAGTTTTTCAACTTGATTTTTTTATTCCTATTCTTTCACTTCGATTTTTTGCCCCCATTTTTTCACTTCAATTTTTTTGCTCTTAATTTTTCACCTTGATTTTTTTGTTCCCAATTTTTCACTTCGATTTTTTGGCCCCCATTTTTTCACATCTTTTTTTTGTTCCCAATTTTTCACTTCGATTTTTTTGTTCCGAATTTTTCACTTCGATTTTTTGGCCCCCTATTTTTCACTTCTATTTTTTTTCCCAATTTTTCACTTCGATTTTGAAATTCTCAGTTTTATTTAGAAAAAAATTGATTATCTAATAAAAAATTTAAATTCAAAAACTTGTGTTTCAATTGAAAAATCGTTAAAAACTAAAGTGGCTAGGGAGGAAGAGGACTTTGGAAATTAGTTTTTGTCCTAATTTCCCAAATTGTTGATTGACACTTGAATTTTCTAATTTCCCGCAAACCAACTGGACCAAAAAAATGTGAATATTATAAAAAGAAAAATAAAAATAGAAATCTTCATAAAGACAATTGCCATTTTGACATGTATCTCAGTTCAATTCAAATATCAAATCTCATGGTGGATGGAGC</canonical>
            <polymorphic>TATCTGTTGACCGCTTTTTTATATCTCTTACAGGAACATAGATATCTGGGCTAAATTTGACTGTTCGGGTGGCACTCTAACAGAGTGTTTACGGTATTCAATAAAATCAAAATTTCAGTCTGCAAAAGGAGTCGTTGTCCACAAAATTTGTCCAAATTCTGAGCATAATATTCTGGTCCAGCGAATCGATGTTCTTCAGCGCCAACGCGATATTCTTGTTGATAGTGTAAGGAGTCAAAAGTTGGTAGTCATCGATTTGGATTCAAAATTTTCAGATCACTCAACGCGACGCTGGCTCGGAGAACACCATCAAATAACTGGCTTTGAATACTCGCGGATTTTGAACTACTAATGATATAACCTTTTTATAGATCAATGAAAATTTTAAAATGTTTATCTTCGATTTTTTTAATACCCAGTTTTTCAACTTGATTTTTTTATTCCTATTCTTTCACTTCGATTTTTTGCCCCCATTTTTTCACTTCAATTTTTTTGCTCTYAATTTTTCACCTTGATTTTTTTGTTCCCAATTTTTCACTTCGATTTTTTGGCCCCCATTTTTTCACATCTTTTTTTTGTTCCCAATTTTTCACTTCGATTTTTTTGTTCCGAATTTTTCACTTCGATTTTTTGGCCCCCTATTTTTCACTTCTATTTTTTTTCCCAATTTTTCACTTCGATTTTGAAATTCTCAGTTTTATTTAGAAAAAAATTGATTATCTAATAAAAAATTTAAATTCAAAAACTTGTGTTTCAATTGAAAAATCGTTAAAAACTAAAGTGGCTAGGGAGGAAGAGGACTTTGGAAATTAGTTTTTGTCCTAATTTCCCAAATTGTTGATTGACACTTGAATTTTCTAATTTCCCGCAAACCAACTGGACCAAAAAAATGTGAATATTATAAAAAGAAAAATAAAAATAGAAATCTTCATAAAGACAATTGCCATTTTGACATGTATCTCAGTTCAATTCAAATATCAAATCTCATGGTGGATGGAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>385 234 231 90 36 24</canonical_bands>
                <polymorphic_bands>385 324 231 36 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGGATTTTGAACTACTAATGA</pcr_primer_p1>
		<pcr_primer_p2>TGAAAAATTGGGAACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>GCGGATTTTGAACTACTAATGATATAACCTTTTTATAGATCAATGAAAATTTTAAAATGTTTATCTTCGATTTTTTTAATACCCAGTTTTTCAACTTGATTTTTTTATTCCTATTCTTTCACTTCGATTTTTTGCCCCCATTTTTTCACTTCAATTTTTTTGCTCTTAATTTTTCACCTTGATTTTTTTGTTCCCAATTTTTCA</canonical_amplicon>
		<polymorphic_amplicon>GCGGATTTTGAACTACTAATGATATAACCTTTTTATAGATCAATGAAAATTTTAAAATGTTTATCTTCGATTTTTTTAATACCCAGTTTTTCAACTTGATTTTTTTATTCCTATTCTTTCACTTCGATTTTTTGCCCCCATTTTTTCACTTCAATTTTTTTGCTCTYAATTTTTCACCTTGATTTTTTTGTTCCCAATTTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32232</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>153483</contig_pos>
        <strand></strand>
        <context>TTTTCACCTT[G/C]ATTTTTTTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TTTGCCCCCATTTTTTCACTTCAATTTTTTTGCTCTTAATTTTTCACCTT</left_flank>
        <right_flank>ATTTTTTTGTTCCCAATTTTTCACTTCGATTTTTTGGCCCCCATTTTTTC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTATATCTCTTACAGGAACATAGATATCTGGGCTAAATTTGACTGTTCGGGTGGCACTCTAACAGAGTGTTTACGGTATTCAATAAAATCAAAATTTCAGTCTGCAAAAGGAGTCGTTGTCCACAAAATTTGTCCAAATTCTGAGCATAATATTCTGGTCCAGCGAATCGATGTTCTTCAGCGCCAACGCGATATTCTTGTTGATAGTGTAAGGAGTCAAAAGTTGGTAGTCATCGATTTGGATTCAAAATTTTCAGATCACTCAACGCGACGCTGGCTCGGAGAACACCATCAAATAACTGGCTTTGAATACTCGCGGATTTTGAACTACTAATGATATAACCTTTTTATAGATCAATGAAAATTTTAAAATGTTTATCTTCGATTTTTTTAATACCCAGTTTTTCAACTTGATTTTTTTATTCCTATTCTTTCACTTCGATTTTTTGCCCCCATTTTTTCACTTCAATTTTTTTGCTCTTAATTTTTCACCTTGATTTTTTTGTTCCCAATTTTTCACTTCGATTTTTTGGCCCCCATTTTTTCACATCTTTTTTTTGTTCCCAATTTTTCACTTCGATTTTTTTGTTCCGAATTTTTCACTTCGATTTTTTGGCCCCCTATTTTTCACTTCTATTTTTTTTCCCAATTTTTCACTTCGATTTTGAAATTCTCAGTTTTATTTAGAAAAAAATTGATTATCTAATAAAAAATTTAAATTCAAAAACTTGTGTTTCAATTGAAAAATCGTTAAAAACTAAAGTGGCTAGGGAGGAAGAGGACTTTGGAAATTAGTTTTTGTCCTAATTTCCCAAATTGTTGATTGACACTTGAATTTTCTAATTTCCCGCAAACCAACTGGACCAAAAAAATGTGAATATTATAAAAAGAAAAATAAAAATAGAAATCTTCATAAAGACAATTGCCATTTTGACATGTATCTCAGTTCAATTCAAATATCAAATCTCATGGTGGATGGAGCTGGCGTTGGACGAG</canonical>
            <polymorphic>TTTTTTATATCTCTTACAGGAACATAGATATCTGGGCTAAATTTGACTGTTCGGGTGGCACTCTAACAGAGTGTTTACGGTATTCAATAAAATCAAAATTTCAGTCTGCAAAAGGAGTCGTTGTCCACAAAATTTGTCCAAATTCTGAGCATAATATTCTGGTCCAGCGAATCGATGTTCTTCAGCGCCAACGCGATATTCTTGTTGATAGTGTAAGGAGTCAAAAGTTGGTAGTCATCGATTTGGATTCAAAATTTTCAGATCACTCAACGCGACGCTGGCTCGGAGAACACCATCAAATAACTGGCTTTGAATACTCGCGGATTTTGAACTACTAATGATATAACCTTTTTATAGATCAATGAAAATTTTAAAATGTTTATCTTCGATTTTTTTAATACCCAGTTTTTCAACTTGATTTTTTTATTCCTATTCTTTCACTTCGATTTTTTGCCCCCATTTTTTCACTTCAATTTTTTTGCTCTTAATTTTTCACCTTSATTTTTTTGTTCCCAATTTTTCACTTCGATTTTTTGGCCCCCATTTTTTCACATCTTTTTTTTGTTCCCAATTTTTCACTTCGATTTTTTTGTTCCGAATTTTTCACTTCGATTTTTTGGCCCCCTATTTTTCACTTCTATTTTTTTTCCCAATTTTTCACTTCGATTTTGAAATTCTCAGTTTTATTTAGAAAAAAATTGATTATCTAATAAAAAATTTAAATTCAAAAACTTGTGTTTCAATTGAAAAATCGTTAAAAACTAAAGTGGCTAGGGAGGAAGAGGACTTTGGAAATTAGTTTTTGTCCTAATTTCCCAAATTGTTGATTGACACTTGAATTTTCTAATTTCCCGCAAACCAACTGGACCAAAAAAATGTGAATATTATAAAAAGAAAAATAAAAATAGAAATCTTCATAAAGACAATTGCCATTTTGACATGTATCTCAGTTCAATTCAAATATCAAATCTCATGGTGGATGGAGCTGGCGTTGGACGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGGATTTTGAACTACTAATGA</pcr_primer_p1>
		<pcr_primer_p2>TGAAAAATTGGGAACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>GCGGATTTTGAACTACTAATGATATAACCTTTTTATAGATCAATGAAAATTTTAAAATGTTTATCTTCGATTTTTTTAATACCCAGTTTTTCAACTTGATTTTTTTATTCCTATTCTTTCACTTCGATTTTTTGCCCCCATTTTTTCACTTCAATTTTTTTGCTCTTAATTTTTCACCTTGATTTTTTTGTTCCCAATTTTTCA</canonical_amplicon>
		<polymorphic_amplicon>GCGGATTTTGAACTACTAATGATATAACCTTTTTATAGATCAATGAAAATTTTAAAATGTTTATCTTCGATTTTTTTAATACCCAGTTTTTCAACTTGATTTTTTTATTCCTATTCTTTCACTTCGATTTTTTGCCCCCATTTTTTCACTTCAATTTTTTTGCTCTTAATTTTTCACCTTSATTTTTTTGTTCCCAATTTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32233</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>153609</contig_pos>
        <strand></strand>
        <context>TTTGGCCCCC[T/A]ATTTTTCACT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCACTTCGATTTTTTTGTTCCGAATTTTTCACTTCGATTTTTTGGCCCCC</left_flank>
        <right_flank>ATTTTTCACTTCTATTTTTTTTCCCAATTTTTCACTTCGATTTTGAAATT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAAATTTGTCCAAATTCTGAGCATAATATTCTGGTCCAGCGAATCGATGTTCTTCAGCGCCAACGCGATATTCTTGTTGATAGTGTAAGGAGTCAAAAGTTGGTAGTCATCGATTTGGATTCAAAATTTTCAGATCACTCAACGCGACGCTGGCTCGGAGAACACCATCAAATAACTGGCTTTGAATACTCGCGGATTTTGAACTACTAATGATATAACCTTTTTATAGATCAATGAAAATTTTAAAATGTTTATCTTCGATTTTTTTAATACCCAGTTTTTCAACTTGATTTTTTTATTCCTATTCTTTCACTTCGATTTTTTGCCCCCATTTTTTCACTTCAATTTTTTTGCTCTTAATTTTTCACCTTGATTTTTTTGTTCCCAATTTTTCACTTCGATTTTTTGGCCCCCATTTTTTCACATCTTTTTTTTGTTCCCAATTTTTCACTTCGATTTTTTTGTTCCGAATTTTTCACTTCGATTTTTTGGCCCCCTATTTTTCACTTCTATTTTTTTTCCCAATTTTTCACTTCGATTTTGAAATTCTCAGTTTTATTTAGAAAAAAATTGATTATCTAATAAAAAATTTAAATTCAAAAACTTGTGTTTCAATTGAAAAATCGTTAAAAACTAAAGTGGCTAGGGAGGAAGAGGACTTTGGAAATTAGTTTTTGTCCTAATTTCCCAAATTGTTGATTGACACTTGAATTTTCTAATTTCCCGCAAACCAACTGGACCAAAAAAATGTGAATATTATAAAAAGAAAAATAAAAATAGAAATCTTCATAAAGACAATTGCCATTTTGACATGTATCTCAGTTCAATTCAAATATCAAATCTCATGGTGGATGGAGCTGGCGTTGGACGAGTGGAGAAGGTAGCTCTCGACAGATTTGTCTGAAAAGTTCCCATATTTTTTTGTCAAATTTTTTTAAAATATCGTGACTTACCAGTCGCCTGCATGGCCAAATTATAAGTACTCGGCTCAGGCAGCT</canonical>
            <polymorphic>ACAAAATTTGTCCAAATTCTGAGCATAATATTCTGGTCCAGCGAATCGATGTTCTTCAGCGCCAACGCGATATTCTTGTTGATAGTGTAAGGAGTCAAAAGTTGGTAGTCATCGATTTGGATTCAAAATTTTCAGATCACTCAACGCGACGCTGGCTCGGAGAACACCATCAAATAACTGGCTTTGAATACTCGCGGATTTTGAACTACTAATGATATAACCTTTTTATAGATCAATGAAAATTTTAAAATGTTTATCTTCGATTTTTTTAATACCCAGTTTTTCAACTTGATTTTTTTATTCCTATTCTTTCACTTCGATTTTTTGCCCCCATTTTTTCACTTCAATTTTTTTGCTCTTAATTTTTCACCTTGATTTTTTTGTTCCCAATTTTTCACTTCGATTTTTTGGCCCCCATTTTTTCACATCTTTTTTTTGTTCCCAATTTTTCACTTCGATTTTTTTGTTCCGAATTTTTCACTTCGATTTTTTGGCCCCCWATTTTTCACTTCTATTTTTTTTCCCAATTTTTCACTTCGATTTTGAAATTCTCAGTTTTATTTAGAAAAAAATTGATTATCTAATAAAAAATTTAAATTCAAAAACTTGTGTTTCAATTGAAAAATCGTTAAAAACTAAAGTGGCTAGGGAGGAAGAGGACTTTGGAAATTAGTTTTTGTCCTAATTTCCCAAATTGTTGATTGACACTTGAATTTTCTAATTTCCCGCAAACCAACTGGACCAAAAAAATGTGAATATTATAAAAAGAAAAATAAAAATAGAAATCTTCATAAAGACAATTGCCATTTTGACATGTATCTCAGTTCAATTCAAATATCAAATCTCATGGTGGATGGAGCTGGCGTTGGACGAGTGGAGAAGGTAGCTCTCGACAGATTTGTCTGAAAAGTTCCCATATTTTTTTGTCAAATTTTTTTAAAATATCGTGACTTACCAGTCGCCTGCATGGCCAAATTATAAGTACTCGGCTCAGGCAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGTTCCCAATTTTTCACT</pcr_primer_p1>
		<pcr_primer_p2>AGGACAAAAACTAATTTCCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTGTTCCCAATTTTTCACTTCGATTTTTTGGCCCCCATTTTTTCACATCTTTTTTTTGTTCCCAATTTTTCACTTCGATTTTTTTGTTCCGAATTTTTCACTTCGATTTTTTGGCCCCCTATTTTTCACTTCTATTTTTTTTCCCAATTTTTCACTTCGATTTTGAAATTCTCAGTTTTATTTAGAAAAAAATTGATTATCTAATAAAAAATTTAAATTCAAAAACTTGTGTTTCAATTGAAAAATCGTTAAAAACTAAAGTGGCTAGGGAGGAAGAGGACTTTGGAAATTAGTTTTTGTCCT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGTTCCCAATTTTTCACTTCGATTTTTTGGCCCCCATTTTTTCACATCTTTTTTTTGTTCCCAATTTTTCACTTCGATTTTTTTGTTCCGAATTTTTCACTTCGATTTTTTGGCCCCCWATTTTTCACTTCTATTTTTTTTCCCAATTTTTCACTTCGATTTTGAAATTCTCAGTTTTATTTAGAAAAAAATTGATTATCTAATAAAAAATTTAAATTCAAAAACTTGTGTTTCAATTGAAAAATCGTTAAAAACTAAAGTGGCTAGGGAGGAAGAGGACTTTGGAAATTAGTTTTTGTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32234</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>158286</contig_pos>
        <strand>+</strand>
        <context>CGACATAAAG[A/C]ACACCATTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGAGTAAAAGATACTCACCCTCCCATTTTGTTCCCCAGAACGACATAAAG</left_flank>
        <right_flank>ACACCATTGAATGTCATGCAGAAGAACAAAAATGCGACTCCAAAGGATAC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGGTCGGCGCGCGGACTGTACTCGTGCGTTTTTTCGTTCGGTCTGCTAAACTTCCCGACCAAGCGCCAAACCATATAAAGCCGAGAATTTCCTCCAAATCTGTCAAAAAACCAACTTTCTAGGATGTTTAGAAGCTGAGATACACCATTTCAAAGTTTCGCAAGTCAGAAACGCAGACAACGAGACACACTGCGTCTCTAACCTTCCATACTTCAATGGACTGTATCCTGGCTCCTAGAAGGCCTAGAAAGCTTATTTTTTGGCAGAATCACAGAAAATTTCCTGCGCTACAAGGTCATATGCAAAAATCTGAAAGAATCTACCGAAAGCTGTCTGACAGCCGTCCGAGCTGACCGATCGGTCGGCGCGCGGACTGTACTCGTGCGTTTTTTCGTTCGGTCTGCTAAACTTCCCGACCGAATAGAAGCCCTAATTAGAATTATTCCACGAGTAAAAGATACTCACCCTCCCATTTTGTTCCCCAGAACGACATAAAGAACACCATTGAATGTCATGCAGAAGAACAAAAATGCGACTCCAAAGGATACAATCGCTCCCAAAGCATTGTCCAACGTTGCCGCCAAAACTCCGATTCTTCGATTGAATCTCAGGATTCTGATCATTTTGCAAGAGGTGAAAAATACTGCTCCAGCAAGACAATAGCTAAATATGATCTCCCAATTTCGTTGAATCGTCAGGTTGATGTAGGCGTTGCCGTTTTTGGCATTGAAGTCCTCCATCGCTTGATTGGTATACTTTTGACGGATTGTGTAAGCGAATACTGAAGCCACCGCAAGAGCTCCAACGACAAGATCCATGAAGTTCCAGGGAGAGAATTCGCTGGAAATGATGTTGTAAAAAATATCTTTGGAGAATATAAAGCAACAAATTTTCTCCAAATCTGTTTAAAAACCAACTTTCTAGGATTTTTAGAATCTGATATACACGCCTTCAAAGTTTCGCAAGCTAGAGACGCAGACAACGAGACACACTGCGTC</canonical>
            <polymorphic>ATCGGTCGGCGCGCGGACTGTACTCGTGCGTTTTTTCGTTCGGTCTGCTAAACTTCCCGACCAAGCGCCAAACCATATAAAGCCGAGAATTTCCTCCAAATCTGTCAAAAAACCAACTTTCTAGGATGTTTAGAAGCTGAGATACACCATTTCAAAGTTTCGCAAGTCAGAAACGCAGACAACGAGACACACTGCGTCTCTAACCTTCCATACTTCAATGGACTGTATCCTGGCTCCTAGAAGGCCTAGAAAGCTTATTTTTTGGCAGAATCACAGAAAATTTCCTGCGCTACAAGGTCATATGCAAAAATCTGAAAGAATCTACCGAAAGCTGTCTGACAGCCGTCCGAGCTGACCGATCGGTCGGCGCGCGGACTGTACTCGTGCGTTTTTTCGTTCGGTCTGCTAAACTTCCCGACCGAATAGAAGCCCTAATTAGAATTATTCCACGAGTAAAAGATACTCACCCTCCCATTTTGTTCCCCAGAACGACATAAAGMACACCATTGAATGTCATGCAGAAGAACAAAAATGCGACTCCAAAGGATACAATCGCTCCCAAAGCATTGTCCAACGTTGCCGCCAAAACTCCGATTCTTCGATTGAATCTCAGGATTCTGATCATTTTGCAAGAGGTGAAAAATACTGCTCCAGCAAGACAATAGCTAAATATGATCTCCCAATTTCGTTGAATCGTCAGGTTGATGTAGGCGTTGCCGTTTTTGGCATTGAAGTCCTCCATCGCTTGATTGGTATACTTTTGACGGATTGTGTAAGCGAATACTGAAGCCACCGCAAGAGCTCCAACGACAAGATCCATGAAGTTCCAGGGAGAGAATTCGCTGGAAATGATGTTGTAAAAAATATCTTTGGAGAATATAAAGCAACAAATTTTCTCCAAATCTGTTTAAAAACCAACTTTCTAGGATTTTTAGAATCTGATATACACGCCTTCAAAGTTTCGCAAGCTAGAGACGCAGACAACGAGACACACTGCGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCACGAGTAAAAGATACTCA</pcr_primer_p1>
		<pcr_primer_p2>GAAATTGGGAGATCATATTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATTCCACGAGTAAAAGATACTCACCCTCCCATTTTGTTCCCCAGAACGACATAAAGAACACCATTGAATGTCATGCAGAAGAACAAAAATGCGACTCCAAAGGATACAATCGCTCCCAAAGCATTGTCCAACGTTGCCGCCAAAACTCCGATTCTTCGATTGAATCTCAGGATTCTGATCATTTTGCAAGAGGTGAAAAATACTGCTCCAGCAAGACAATAGCTAAATATGATCTCCCAATTTC</canonical_amplicon>
		<polymorphic_amplicon>ATTCCACGAGTAAAAGATACTCACCCTCCCATTTTGTTCCCCAGAACGACATAAAGMACACCATTGAATGTCATGCAGAAGAACAAAAATGCGACTCCAAAGGATACAATCGCTCCCAAAGCATTGTCCAACGTTGCCGCCAAAACTCCGATTCTTCGATTGAATCTCAGGATTCTGATCATTTTGCAAGAGGTGAAAAATACTGCTCCAGCAAGACAATAGCTAAATATGATCTCCCAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32235</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>158310</contig_pos>
        <strand>+</strand>
        <context>TCATGCAGAA[A/G]AACAAAAATG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTGTTCCCCAGAACGACATAAAGAACACCATTGAATGTCATGCAGAA</left_flank>
        <right_flank>AACAAAAATGCGACTCCAAAGGATACAATCGCTCCCAAAGCATTGTCCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTGCGTTTTTTCGTTCGGTCTGCTAAACTTCCCGACCAAGCGCCAAACCATATAAAGCCGAGAATTTCCTCCAAATCTGTCAAAAAACCAACTTTCTAGGATGTTTAGAAGCTGAGATACACCATTTCAAAGTTTCGCAAGTCAGAAACGCAGACAACGAGACACACTGCGTCTCTAACCTTCCATACTTCAATGGACTGTATCCTGGCTCCTAGAAGGCCTAGAAAGCTTATTTTTTGGCAGAATCACAGAAAATTTCCTGCGCTACAAGGTCATATGCAAAAATCTGAAAGAATCTACCGAAAGCTGTCTGACAGCCGTCCGAGCTGACCGATCGGTCGGCGCGCGGACTGTACTCGTGCGTTTTTTCGTTCGGTCTGCTAAACTTCCCGACCGAATAGAAGCCCTAATTAGAATTATTCCACGAGTAAAAGATACTCACCCTCCCATTTTGTTCCCCAGAACGACATAAAGAACACCATTGAATGTCATGCAGAAGAACAAAAATGCGACTCCAAAGGATACAATCGCTCCCAAAGCATTGTCCAACGTTGCCGCCAAAACTCCGATTCTTCGATTGAATCTCAGGATTCTGATCATTTTGCAAGAGGTGAAAAATACTGCTCCAGCAAGACAATAGCTAAATATGATCTCCCAATTTCGTTGAATCGTCAGGTTGATGTAGGCGTTGCCGTTTTTGGCATTGAAGTCCTCCATCGCTTGATTGGTATACTTTTGACGGATTGTGTAAGCGAATACTGAAGCCACCGCAAGAGCTCCAACGACAAGATCCATGAAGTTCCAGGGAGAGAATTCGCTGGAAATGATGTTGTAAAAAATATCTTTGGAGAATATAAAGCAACAAATTTTCTCCAAATCTGTTTAAAAACCAACTTTCTAGGATTTTTAGAATCTGATATACACGCCTTCAAAGTTTCGCAAGCTAGAGACGCAGACAACGAGACACACTGCGTCTCTAATTTCCCAAACTTCGAATGA</canonical>
            <polymorphic>CGTGCGTTTTTTCGTTCGGTCTGCTAAACTTCCCGACCAAGCGCCAAACCATATAAAGCCGAGAATTTCCTCCAAATCTGTCAAAAAACCAACTTTCTAGGATGTTTAGAAGCTGAGATACACCATTTCAAAGTTTCGCAAGTCAGAAACGCAGACAACGAGACACACTGCGTCTCTAACCTTCCATACTTCAATGGACTGTATCCTGGCTCCTAGAAGGCCTAGAAAGCTTATTTTTTGGCAGAATCACAGAAAATTTCCTGCGCTACAAGGTCATATGCAAAAATCTGAAAGAATCTACCGAAAGCTGTCTGACAGCCGTCCGAGCTGACCGATCGGTCGGCGCGCGGACTGTACTCGTGCGTTTTTTCGTTCGGTCTGCTAAACTTCCCGACCGAATAGAAGCCCTAATTAGAATTATTCCACGAGTAAAAGATACTCACCCTCCCATTTTGTTCCCCAGAACGACATAAAGAACACCATTGAATGTCATGCAGAARAACAAAAATGCGACTCCAAAGGATACAATCGCTCCCAAAGCATTGTCCAACGTTGCCGCCAAAACTCCGATTCTTCGATTGAATCTCAGGATTCTGATCATTTTGCAAGAGGTGAAAAATACTGCTCCAGCAAGACAATAGCTAAATATGATCTCCCAATTTCGTTGAATCGTCAGGTTGATGTAGGCGTTGCCGTTTTTGGCATTGAAGTCCTCCATCGCTTGATTGGTATACTTTTGACGGATTGTGTAAGCGAATACTGAAGCCACCGCAAGAGCTCCAACGACAAGATCCATGAAGTTCCAGGGAGAGAATTCGCTGGAAATGATGTTGTAAAAAATATCTTTGGAGAATATAAAGCAACAAATTTTCTCCAAATCTGTTTAAAAACCAACTTTCTAGGATTTTTAGAATCTGATATACACGCCTTCAAAGTTTCGCAAGCTAGAGACGCAGACAACGAGACACACTGCGTCTCTAATTTCCCAAACTTCGAATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCACGAGTAAAAGATACTCA</pcr_primer_p1>
		<pcr_primer_p2>GAAATTGGGAGATCATATTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATTCCACGAGTAAAAGATACTCACCCTCCCATTTTGTTCCCCAGAACGACATAAAGAACACCATTGAATGTCATGCAGAAGAACAAAAATGCGACTCCAAAGGATACAATCGCTCCCAAAGCATTGTCCAACGTTGCCGCCAAAACTCCGATTCTTCGATTGAATCTCAGGATTCTGATCATTTTGCAAGAGGTGAAAAATACTGCTCCAGCAAGACAATAGCTAAATATGATCTCCCAATTTC</canonical_amplicon>
		<polymorphic_amplicon>ATTCCACGAGTAAAAGATACTCACCCTCCCATTTTGTTCCCCAGAACGACATAAAGAACACCATTGAATGTCATGCAGAARAACAAAAATGCGACTCCAAAGGATACAATCGCTCCCAAAGCATTGTCCAACGTTGCCGCCAAAACTCCGATTCTTCGATTGAATCTCAGGATTCTGATCATTTTGCAAGAGGTGAAAAATACTGCTCCAGCAAGACAATAGCTAAATATGATCTCCCAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32236</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>158323</contig_pos>
        <strand>+</strand>
        <context>CAAAAATGCG[A/G]CTCCAAAGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAACGACATAAAGAACACCATTGAATGTCATGCAGAAGAACAAAAATGCG</left_flank>
        <right_flank>CTCCAAAGGATACAATCGCTCCCAAAGCATTGTCCAACGTTGCCGCCAAA</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCGGTCTGCTAAACTTCCCGACCAAGCGCCAAACCATATAAAGCCGAGAATTTCCTCCAAATCTGTCAAAAAACCAACTTTCTAGGATGTTTAGAAGCTGAGATACACCATTTCAAAGTTTCGCAAGTCAGAAACGCAGACAACGAGACACACTGCGTCTCTAACCTTCCATACTTCAATGGACTGTATCCTGGCTCCTAGAAGGCCTAGAAAGCTTATTTTTTGGCAGAATCACAGAAAATTTCCTGCGCTACAAGGTCATATGCAAAAATCTGAAAGAATCTACCGAAAGCTGTCTGACAGCCGTCCGAGCTGACCGATCGGTCGGCGCGCGGACTGTACTCGTGCGTTTTTTCGTTCGGTCTGCTAAACTTCCCGACCGAATAGAAGCCCTAATTAGAATTATTCCACGAGTAAAAGATACTCACCCTCCCATTTTGTTCCCCAGAACGACATAAAGAACACCATTGAATGTCATGCAGAAGAACAAAAATGCGACTCCAAAGGATACAATCGCTCCCAAAGCATTGTCCAACGTTGCCGCCAAAACTCCGATTCTTCGATTGAATCTCAGGATTCTGATCATTTTGCAAGAGGTGAAAAATACTGCTCCAGCAAGACAATAGCTAAATATGATCTCCCAATTTCGTTGAATCGTCAGGTTGATGTAGGCGTTGCCGTTTTTGGCATTGAAGTCCTCCATCGCTTGATTGGTATACTTTTGACGGATTGTGTAAGCGAATACTGAAGCCACCGCAAGAGCTCCAACGACAAGATCCATGAAGTTCCAGGGAGAGAATTCGCTGGAAATGATGTTGTAAAAAATATCTTTGGAGAATATAAAGCAACAAATTTTCTCCAAATCTGTTTAAAAACCAACTTTCTAGGATTTTTAGAATCTGATATACACGCCTTCAAAGTTTCGCAAGCTAGAGACGCAGACAACGAGACACACTGCGTCTCTAATTTCCCAAACTTCGAATGACTGTAACTCGGCT</canonical>
            <polymorphic>GTTCGGTCTGCTAAACTTCCCGACCAAGCGCCAAACCATATAAAGCCGAGAATTTCCTCCAAATCTGTCAAAAAACCAACTTTCTAGGATGTTTAGAAGCTGAGATACACCATTTCAAAGTTTCGCAAGTCAGAAACGCAGACAACGAGACACACTGCGTCTCTAACCTTCCATACTTCAATGGACTGTATCCTGGCTCCTAGAAGGCCTAGAAAGCTTATTTTTTGGCAGAATCACAGAAAATTTCCTGCGCTACAAGGTCATATGCAAAAATCTGAAAGAATCTACCGAAAGCTGTCTGACAGCCGTCCGAGCTGACCGATCGGTCGGCGCGCGGACTGTACTCGTGCGTTTTTTCGTTCGGTCTGCTAAACTTCCCGACCGAATAGAAGCCCTAATTAGAATTATTCCACGAGTAAAAGATACTCACCCTCCCATTTTGTTCCCCAGAACGACATAAAGAACACCATTGAATGTCATGCAGAAGAACAAAAATGCGRCTCCAAAGGATACAATCGCTCCCAAAGCATTGTCCAACGTTGCCGCCAAAACTCCGATTCTTCGATTGAATCTCAGGATTCTGATCATTTTGCAAGAGGTGAAAAATACTGCTCCAGCAAGACAATAGCTAAATATGATCTCCCAATTTCGTTGAATCGTCAGGTTGATGTAGGCGTTGCCGTTTTTGGCATTGAAGTCCTCCATCGCTTGATTGGTATACTTTTGACGGATTGTGTAAGCGAATACTGAAGCCACCGCAAGAGCTCCAACGACAAGATCCATGAAGTTCCAGGGAGAGAATTCGCTGGAAATGATGTTGTAAAAAATATCTTTGGAGAATATAAAGCAACAAATTTTCTCCAAATCTGTTTAAAAACCAACTTTCTAGGATTTTTAGAATCTGATATACACGCCTTCAAAGTTTCGCAAGCTAGAGACGCAGACAACGAGACACACTGCGTCTCTAATTTCCCAAACTTCGAATGACTGTAACTCGGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>244 231 218 102 77 57 50 12 9</canonical_bands>
                <polymorphic_bands>275 244 231 102 77 50 12 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCCACGAGTAAAAGATACTCA</pcr_primer_p1>
		<pcr_primer_p2>GAAATTGGGAGATCATATTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATTCCACGAGTAAAAGATACTCACCCTCCCATTTTGTTCCCCAGAACGACATAAAGAACACCATTGAATGTCATGCAGAAGAACAAAAATGCGACTCCAAAGGATACAATCGCTCCCAAAGCATTGTCCAACGTTGCCGCCAAAACTCCGATTCTTCGATTGAATCTCAGGATTCTGATCATTTTGCAAGAGGTGAAAAATACTGCTCCAGCAAGACAATAGCTAAATATGATCTCCCAATTTC</canonical_amplicon>
		<polymorphic_amplicon>ATTCCACGAGTAAAAGATACTCACCCTCCCATTTTGTTCCCCAGAACGACATAAAGAACACCATTGAATGTCATGCAGAAGAACAAAAATGCGRCTCCAAAGGATACAATCGCTCCCAAAGCATTGTCCAACGTTGCCGCCAAAACTCCGATTCTTCGATTGAATCTCAGGATTCTGATCATTTTGCAAGAGGTGAAAAATACTGCTCCAGCAAGACAATAGCTAAATATGATCTCCCAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32237</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>158336</contig_pos>
        <strand>+</strand>
        <context>CCAAAGGATA[C/T]AATCGCTCCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACACCATTGAATGTCATGCAGAAGAACAAAAATGCGACTCCAAAGGATA</left_flank>
        <right_flank>AATCGCTCCCAAAGCATTGTCCAACGTTGCCGCCAAAACTCCGATTCTTC</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTTCCCGACCAAGCGCCAAACCATATAAAGCCGAGAATTTCCTCCAAATCTGTCAAAAAACCAACTTTCTAGGATGTTTAGAAGCTGAGATACACCATTTCAAAGTTTCGCAAGTCAGAAACGCAGACAACGAGACACACTGCGTCTCTAACCTTCCATACTTCAATGGACTGTATCCTGGCTCCTAGAAGGCCTAGAAAGCTTATTTTTTGGCAGAATCACAGAAAATTTCCTGCGCTACAAGGTCATATGCAAAAATCTGAAAGAATCTACCGAAAGCTGTCTGACAGCCGTCCGAGCTGACCGATCGGTCGGCGCGCGGACTGTACTCGTGCGTTTTTTCGTTCGGTCTGCTAAACTTCCCGACCGAATAGAAGCCCTAATTAGAATTATTCCACGAGTAAAAGATACTCACCCTCCCATTTTGTTCCCCAGAACGACATAAAGAACACCATTGAATGTCATGCAGAAGAACAAAAATGCGACTCCAAAGGATACAATCGCTCCCAAAGCATTGTCCAACGTTGCCGCCAAAACTCCGATTCTTCGATTGAATCTCAGGATTCTGATCATTTTGCAAGAGGTGAAAAATACTGCTCCAGCAAGACAATAGCTAAATATGATCTCCCAATTTCGTTGAATCGTCAGGTTGATGTAGGCGTTGCCGTTTTTGGCATTGAAGTCCTCCATCGCTTGATTGGTATACTTTTGACGGATTGTGTAAGCGAATACTGAAGCCACCGCAAGAGCTCCAACGACAAGATCCATGAAGTTCCAGGGAGAGAATTCGCTGGAAATGATGTTGTAAAAAATATCTTTGGAGAATATAAAGCAACAAATTTTCTCCAAATCTGTTTAAAAACCAACTTTCTAGGATTTTTAGAATCTGATATACACGCCTTCAAAGTTTCGCAAGCTAGAGACGCAGACAACGAGACACACTGCGTCTCTAATTTCCCAAACTTCGAATGACTGTAACTCGGCTCCTAGAAGGCCTG</canonical>
            <polymorphic>AACTTCCCGACCAAGCGCCAAACCATATAAAGCCGAGAATTTCCTCCAAATCTGTCAAAAAACCAACTTTCTAGGATGTTTAGAAGCTGAGATACACCATTTCAAAGTTTCGCAAGTCAGAAACGCAGACAACGAGACACACTGCGTCTCTAACCTTCCATACTTCAATGGACTGTATCCTGGCTCCTAGAAGGCCTAGAAAGCTTATTTTTTGGCAGAATCACAGAAAATTTCCTGCGCTACAAGGTCATATGCAAAAATCTGAAAGAATCTACCGAAAGCTGTCTGACAGCCGTCCGAGCTGACCGATCGGTCGGCGCGCGGACTGTACTCGTGCGTTTTTTCGTTCGGTCTGCTAAACTTCCCGACCGAATAGAAGCCCTAATTAGAATTATTCCACGAGTAAAAGATACTCACCCTCCCATTTTGTTCCCCAGAACGACATAAAGAACACCATTGAATGTCATGCAGAAGAACAAAAATGCGACTCCAAAGGATAYAATCGCTCCCAAAGCATTGTCCAACGTTGCCGCCAAAACTCCGATTCTTCGATTGAATCTCAGGATTCTGATCATTTTGCAAGAGGTGAAAAATACTGCTCCAGCAAGACAATAGCTAAATATGATCTCCCAATTTCGTTGAATCGTCAGGTTGATGTAGGCGTTGCCGTTTTTGGCATTGAAGTCCTCCATCGCTTGATTGGTATACTTTTGACGGATTGTGTAAGCGAATACTGAAGCCACCGCAAGAGCTCCAACGACAAGATCCATGAAGTTCCAGGGAGAGAATTCGCTGGAAATGATGTTGTAAAAAATATCTTTGGAGAATATAAAGCAACAAATTTTCTCCAAATCTGTTTAAAAACCAACTTTCTAGGATTTTTAGAATCTGATATACACGCCTTCAAAGTTTCGCAAGCTAGAGACGCAGACAACGAGACACACTGCGTCTCTAATTTCCCAAACTTCGAATGACTGTAACTCGGCTCCTAGAAGGCCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCACGAGTAAAAGATACTCA</pcr_primer_p1>
		<pcr_primer_p2>GAAATTGGGAGATCATATTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATTCCACGAGTAAAAGATACTCACCCTCCCATTTTGTTCCCCAGAACGACATAAAGAACACCATTGAATGTCATGCAGAAGAACAAAAATGCGACTCCAAAGGATACAATCGCTCCCAAAGCATTGTCCAACGTTGCCGCCAAAACTCCGATTCTTCGATTGAATCTCAGGATTCTGATCATTTTGCAAGAGGTGAAAAATACTGCTCCAGCAAGACAATAGCTAAATATGATCTCCCAATTTC</canonical_amplicon>
		<polymorphic_amplicon>ATTCCACGAGTAAAAGATACTCACCCTCCCATTTTGTTCCCCAGAACGACATAAAGAACACCATTGAATGTCATGCAGAAGAACAAAAATGCGACTCCAAAGGATAYAATCGCTCCCAAAGCATTGTCCAACGTTGCCGCCAAAACTCCGATTCTTCGATTGAATCTCAGGATTCTGATCATTTTGCAAGAGGTGAAAAATACTGCTCCAGCAAGACAATAGCTAAATATGATCTCCCAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32238</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>158555</contig_pos>
        <strand>+</strand>
        <context>TTTTGACGGA[G/T]KGTGTAAGCG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTTTTGGCATTGAAGTCCTCCATCGCTTGATTGGTATACTTTTGACGGA</left_flank>
        <right_flank>TGTGTAAGCGAATACTGAAGCCACCGCAAGAGCTCCAACGACAAGATCCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCACAGAAAATTTCCTGCGCTACAAGGTCATATGCAAAAATCTGAAAGAATCTACCGAAAGCTGTCTGACAGCCGTCCGAGCTGACCGATCGGTCGGCGCGCGGACTGTACTCGTGCGTTTTTTCGTTCGGTCTGCTAAACTTCCCGACCGAATAGAAGCCCTAATTAGAATTATTCCACGAGTAAAAGATACTCACCCTCCCATTTTGTTCCCCAGAACGACATAAAGAACACCATTGAATGTCATGCAGAAGAACAAAAATGCGACTCCAAAGGATACAATCGCTCCCAAAGCATTGTCCAACGTTGCCGCCAAAACTCCGATTCTTCGATTGAATCTCAGGATTCTGATCATTTTGCAAGAGGTGAAAAATACTGCTCCAGCAAGACAATAGCTAAATATGATCTCCCAATTTCGTTGAATCGTCAGGTTGATGTAGGCGTTGCCGTTTTTGGCATTGAAGTCCTCCATCGCTTGATTGGTATACTTTTGACGGATTGTGTAAGCGAATACTGAAGCCACCGCAAGAGCTCCAACGACAAGATCCATGAAGTTCCAGGGAGAGAATTCGCTGGAAATGATGTTGTAAAAAATATCTTTGGAGAATATAAAGCAACAAATTTTCTCCAAATCTGTTTAAAAACCAACTTTCTAGGATTTTTAGAATCTGATATACACGCCTTCAAAGTTTCGCAAGCTAGAGACGCAGACAACGAGACACACTGCGTCTCTAATTTCCCAAACTTCGAATGACTGTAACTCGGCTCCTAGAAGGCCTGGAAAGTTGGTTTCTTGACATAATTACAGGAAATTTTCTGCTCTACAAGTTCAAAAAAGTTGCAAAAATCAAAAAGCATTAAATTTCTAGCCAATCGACAGCCGACCGACTGTGCAGCTGCAAAACTCACCCCAACACCAACTTATAAACTATCTTGAATGGATTCAACGTTCGCTTCATTGTGGTTATAACCTTGTATCTTCCATAGATGTAACACAAC</canonical>
            <polymorphic>ATCACAGAAAATTTCCTGCGCTACAAGGTCATATGCAAAAATCTGAAAGAATCTACCGAAAGCTGTCTGACAGCCGTCCGAGCTGACCGATCGGTCGGCGCGCGGACTGTACTCGTGCGTTTTTTCGTTCGGTCTGCTAAACTTCCCGACCGAATAGAAGCCCTAATTAGAATTATTCCACGAGTAAAAGATACTCACCCTCCCATTTTGTTCCCCAGAACGACATAAAGAACACCATTGAATGTCATGCAGAAGAACAAAAATGCGACTCCAAAGGATACAATCGCTCCCAAAGCATTGTCCAACGTTGCCGCCAAAACTCCGATTCTTCGATTGAATCTCAGGATTCTGATCATTTTGCAAGAGGTGAAAAATACTGCTCCAGCAAGACAATAGCTAAATATGATCTCCCAATTTCGTTGAATCGTCAGGTTGATGTAGGCGTTGCCGTTTTTGGCATTGAAGTCCTCCATCGCTTGATTGGTATACTTTTGACGGAKTGTGTAAGCGAATACTGAAGCCACCGCAAGAGCTCCAACGACAAGATCCATGAAGTTCCAGGGAGAGAATTCGCTGGAAATGATGTTGTAAAAAATATCTTTGGAGAATATAAAGCAACAAATTTTCTCCAAATCTGTTTAAAAACCAACTTTCTAGGATTTTTAGAATCTGATATACACGCCTTCAAAGTTTCGCAAGCTAGAGACGCAGACAACGAGACACACTGCGTCTCTAATTTCCCAAACTTCGAATGACTGTAACTCGGCTCCTAGAAGGCCTGGAAAGTTGGTTTCTTGACATAATTACAGGAAATTTTCTGCTCTACAAGTTCAAAAAAGTTGCAAAAATCAAAAAGCATTAAATTTCTAGCCAATCGACAGCCGACCGACTGTGCAGCTGCAAAACTCACCCCAACACCAACTTATAAACTATCTTGAATGGATTCAACGTTCGCTTCATTGTGGTTATAACCTTGTATCTTCCATAGATGTAACACAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTCAGGATTCTGATCATTTT</pcr_primer_p1>
		<pcr_primer_p2>GAATTCTCTCCCTGGAACTT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>ATCTCAGGATTCTGATCATTTTGCAAGAGGTGAAAAATACTGCTCCAGCAAGACAATAGCTAAATATGATCTCCCAATTTCGTTGAATCGTCAGGTTGATGTAGGCGTTGCCGTTTTTGGCATTGAAGTCCTCCATCGCTTGATTGGTATACTTTTGACGGATTGTGTAAGCGAATACTGAAGCCACCGCAAGAGCTCCAACGACAAGATCCATGAAGTTCCAGGGAGAGAATTC</canonical_amplicon>
		<polymorphic_amplicon>ATCTCAGGATTCTGATCATTTTGCAAGAGGTGAAAAATACTGCTCCAGCAAGACAATAGCTAAATATGATCTCCCAATTTCGTTGAATCGTCAGGTTGATGTAGGCGTTGCCGTTTTTGGCATTGAAGTCCTCCATCGCTTGATTGGTATACTTTTGACGGAKTGTGTAAGCGAATACTGAAGCCACCGCAAGAGCTCCAACGACAAGATCCATGAAGTTCCAGGGAGAGAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32239</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>158556</contig_pos>
        <strand>+</strand>
        <context>TTTGACGGAK[G/T]GTGTAAGCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTTGGCATTGAAGTCCTCCATCGCTTGATTGGTATACTTTTGACGGAT</left_flank>
        <right_flank>GTGTAAGCGAATACTGAAGCCACCGCAAGAGCTCCAACGACAAGATCCAT</right_flank>
        <qual_score>146</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACAGAAAATTTCCTGCGCTACAAGGTCATATGCAAAAATCTGAAAGAATCTACCGAAAGCTGTCTGACAGCCGTCCGAGCTGACCGATCGGTCGGCGCGCGGACTGTACTCGTGCGTTTTTTCGTTCGGTCTGCTAAACTTCCCGACCGAATAGAAGCCCTAATTAGAATTATTCCACGAGTAAAAGATACTCACCCTCCCATTTTGTTCCCCAGAACGACATAAAGAACACCATTGAATGTCATGCAGAAGAACAAAAATGCGACTCCAAAGGATACAATCGCTCCCAAAGCATTGTCCAACGTTGCCGCCAAAACTCCGATTCTTCGATTGAATCTCAGGATTCTGATCATTTTGCAAGAGGTGAAAAATACTGCTCCAGCAAGACAATAGCTAAATATGATCTCCCAATTTCGTTGAATCGTCAGGTTGATGTAGGCGTTGCCGTTTTTGGCATTGAAGTCCTCCATCGCTTGATTGGTATACTTTTGACGGATTGTGTAAGCGAATACTGAAGCCACCGCAAGAGCTCCAACGACAAGATCCATGAAGTTCCAGGGAGAGAATTCGCTGGAAATGATGTTGTAAAAAATATCTTTGGAGAATATAAAGCAACAAATTTTCTCCAAATCTGTTTAAAAACCAACTTTCTAGGATTTTTAGAATCTGATATACACGCCTTCAAAGTTTCGCAAGCTAGAGACGCAGACAACGAGACACACTGCGTCTCTAATTTCCCAAACTTCGAATGACTGTAACTCGGCTCCTAGAAGGCCTGGAAAGTTGGTTTCTTGACATAATTACAGGAAATTTTCTGCTCTACAAGTTCAAAAAAGTTGCAAAAATCAAAAAGCATTAAATTTCTAGCCAATCGACAGCCGACCGACTGTGCAGCTGCAAAACTCACCCCAACACCAACTTATAAACTATCTTGAATGGATTCAACGTTCGCTTCATTGTGGTTATAACCTTGTATCTTCCATAGATGTAACACAACA</canonical>
            <polymorphic>TCACAGAAAATTTCCTGCGCTACAAGGTCATATGCAAAAATCTGAAAGAATCTACCGAAAGCTGTCTGACAGCCGTCCGAGCTGACCGATCGGTCGGCGCGCGGACTGTACTCGTGCGTTTTTTCGTTCGGTCTGCTAAACTTCCCGACCGAATAGAAGCCCTAATTAGAATTATTCCACGAGTAAAAGATACTCACCCTCCCATTTTGTTCCCCAGAACGACATAAAGAACACCATTGAATGTCATGCAGAAGAACAAAAATGCGACTCCAAAGGATACAATCGCTCCCAAAGCATTGTCCAACGTTGCCGCCAAAACTCCGATTCTTCGATTGAATCTCAGGATTCTGATCATTTTGCAAGAGGTGAAAAATACTGCTCCAGCAAGACAATAGCTAAATATGATCTCCCAATTTCGTTGAATCGTCAGGTTGATGTAGGCGTTGCCGTTTTTGGCATTGAAGTCCTCCATCGCTTGATTGGTATACTTTTGACGGATKGTGTAAGCGAATACTGAAGCCACCGCAAGAGCTCCAACGACAAGATCCATGAAGTTCCAGGGAGAGAATTCGCTGGAAATGATGTTGTAAAAAATATCTTTGGAGAATATAAAGCAACAAATTTTCTCCAAATCTGTTTAAAAACCAACTTTCTAGGATTTTTAGAATCTGATATACACGCCTTCAAAGTTTCGCAAGCTAGAGACGCAGACAACGAGACACACTGCGTCTCTAATTTCCCAAACTTCGAATGACTGTAACTCGGCTCCTAGAAGGCCTGGAAAGTTGGTTTCTTGACATAATTACAGGAAATTTTCTGCTCTACAAGTTCAAAAAAGTTGCAAAAATCAAAAAGCATTAAATTTCTAGCCAATCGACAGCCGACCGACTGTGCAGCTGCAAAACTCACCCCAACACCAACTTATAAACTATCTTGAATGGATTCAACGTTCGCTTCATTGTGGTTATAACCTTGTATCTTCCATAGATGTAACACAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTCAGGATTCTGATCATTTT</pcr_primer_p1>
		<pcr_primer_p2>GAATTCTCTCCCTGGAACTT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>ATCTCAGGATTCTGATCATTTTGCAAGAGGTGAAAAATACTGCTCCAGCAAGACAATAGCTAAATATGATCTCCCAATTTCGTTGAATCGTCAGGTTGATGTAGGCGTTGCCGTTTTTGGCATTGAAGTCCTCCATCGCTTGATTGGTATACTTTTGACGGATTGTGTAAGCGAATACTGAAGCCACCGCAAGAGCTCCAACGACAAGATCCATGAAGTTCCAGGGAGAGAATTC</canonical_amplicon>
		<polymorphic_amplicon>ATCTCAGGATTCTGATCATTTTGCAAGAGGTGAAAAATACTGCTCCAGCAAGACAATAGCTAAATATGATCTCCCAATTTCGTTGAATCGTCAGGTTGATGTAGGCGTTGCCGTTTTTGGCATTGAAGTCCTCCATCGCTTGATTGGTATACTTTTGACGGATKGTGTAAGCGAATACTGAAGCCACCGCAAGAGCTCCAACGACAAGATCCATGAAGTTCCAGGGAGAGAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32240</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>158759</contig_pos>
        <strand></strand>
        <context>cgcaagctag[A/T]gacgcagaca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTAGGATTTTTAGAATCTGATATACACGCCTTCAAAGTTTCGCAAGCTAG</left_flank>
        <right_flank>GACGCAGACAACGAGACACACTGCGTCTCTAATTTCCCAAACTTCGAATG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTGTTCCCCAGAACGACATAAAGAACACCATTGAATGTCATGCAGAAGAACAAAAATGCGACTCCAAAGGATACAATCGCTCCCAAAGCATTGTCCAACGTTGCCGCCAAAACTCCGATTCTTCGATTGAATCTCAGGATTCTGATCATTTTGCAAGAGGTGAAAAATACTGCTCCAGCAAGACAATAGCTAAATATGATCTCCCAATTTCGTTGAATCGTCAGGTTGATGTAGGCGTTGCCGTTTTTGGCATTGAAGTCCTCCATCGCTTGATTGGTATACTTTTGACGGATTGTGTAAGCGAATACTGAAGCCACCGCAAGAGCTCCAACGACAAGATCCATGAAGTTCCAGGGAGAGAATTCGCTGGAAATGATGTTGTAAAAAATATCTTTGGAGAATATAAAGCAACAAATTTTCTCCAAATCTGTTTAAAAACCAACTTTCTAGGATTTTTAGAATCTGATATACACGCCTTCAAAGTTTCGCAAGCTAGAGACGCAGACAACGAGACACACTGCGTCTCTAATTTCCCAAACTTCGAATGACTGTAACTCGGCTCCTAGAAGGCCTGGAAAGTTGGTTTCTTGACATAATTACAGGAAATTTTCTGCTCTACAAGTTCAAAAAAGTTGCAAAAATCAAAAAGCATTAAATTTCTAGCCAATCGACAGCCGACCGACTGTGCAGCTGCAAAACTCACCCCAACACCAACTTATAAACTATCTTGAATGGATTCAACGTTCGCTTCATTGTGGTTATAACCTTGTATCTTCCATAGATGTAACACAACACCTCTTTGGCAAATATCAAAACCGAGAAGAAGATATACAACATCTCATAGTACTTCACAACAGTTCCATCTGATCCTTCCGATTTGATAAGCCTCACGGACTCGACCCAACTGTTCGGAAGATAAATTTCAGATTTTGGGATTTCAACAAGTAGCTGGACCACCGAGAAGTAATTGATCTGTGCGTTATAGGCGGAGAATTCA</canonical>
            <polymorphic>ATTTTGTTCCCCAGAACGACATAAAGAACACCATTGAATGTCATGCAGAAGAACAAAAATGCGACTCCAAAGGATACAATCGCTCCCAAAGCATTGTCCAACGTTGCCGCCAAAACTCCGATTCTTCGATTGAATCTCAGGATTCTGATCATTTTGCAAGAGGTGAAAAATACTGCTCCAGCAAGACAATAGCTAAATATGATCTCCCAATTTCGTTGAATCGTCAGGTTGATGTAGGCGTTGCCGTTTTTGGCATTGAAGTCCTCCATCGCTTGATTGGTATACTTTTGACGGATTGTGTAAGCGAATACTGAAGCCACCGCAAGAGCTCCAACGACAAGATCCATGAAGTTCCAGGGAGAGAATTCGCTGGAAATGATGTTGTAAAAAATATCTTTGGAGAATATAAAGCAACAAATTTTCTCCAAATCTGTTTAAAAACCAACTTTCTAGGATTTTTAGAATCTGATATACACGCCTTCAAAGTTTCGCAAGCTAGWGACGCAGACAACGAGACACACTGCGTCTCTAATTTCCCAAACTTCGAATGACTGTAACTCGGCTCCTAGAAGGCCTGGAAAGTTGGTTTCTTGACATAATTACAGGAAATTTTCTGCTCTACAAGTTCAAAAAAGTTGCAAAAATCAAAAAGCATTAAATTTCTAGCCAATCGACAGCCGACCGACTGTGCAGCTGCAAAACTCACCCCAACACCAACTTATAAACTATCTTGAATGGATTCAACGTTCGCTTCATTGTGGTTATAACCTTGTATCTTCCATAGATGTAACACAACACCTCTTTGGCAAATATCAAAACCGAGAAGAAGATATACAACATCTCATAGTACTTCACAACAGTTCCATCTGATCCTTCCGATTTGATAAGCCTCACGGACTCGACCCAACTGTTCGGAAGATAAATTTCAGATTTTGGGATTTCAACAAGTAGCTGGACCACCGAGAAGTAATTGATCTGTGCGTTATAGGCGGAGAATTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGTTCCAGGGAGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAGATAGTTTATAAGTTGGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>389</pcr_amplicon_size>
		<canonical_amplicon>TGAAGTTCCAGGGAGAGAATTCGCTGGAAATGATGTTGTAAAAAATATCTTTGGAGAATATAAAGCAACAAATTTTCTCCAAATCTGTTTAAAAACCAACTTTCTAGGATTTTTAGAATCTGATATACACGCCTTCAAAGTTTCGCAAGCTAGAGACGCAGACAACGAGACACACTGCGTCTCTAATTTCCCAAACTTCGAATGACTGTAACTCGGCTCCTAGAAGGCCTGGAAAGTTGGTTTCTTGACATAATTACAGGAAATTTTCTGCTCTACAAGTTCAAAAAAGTTGCAAAAATCAAAAAGCATTAAATTTCTAGCCAATCGACAGCCGACCGACTGTGCAGCTGCAAAACTCACCCCAACACCAACTTATAAACTATCTTGAA</canonical_amplicon>
		<polymorphic_amplicon>TGAAGTTCCAGGGAGAGAATTCGCTGGAAATGATGTTGTAAAAAATATCTTTGGAGAATATAAAGCAACAAATTTTCTCCAAATCTGTTTAAAAACCAACTTTCTAGGATTTTTAGAATCTGATATACACGCCTTCAAAGTTTCGCAAGCTAGWGACGCAGACAACGAGACACACTGCGTCTCTAATTTCCCAAACTTCGAATGACTGTAACTCGGCTCCTAGAAGGCCTGGAAAGTTGGTTTCTTGACATAATTACAGGAAATTTTCTGCTCTACAAGTTCAAAAAAGTTGCAAAAATCAAAAAGCATTAAATTTCTAGCCAATCGACAGCCGACCGACTGTGCAGCTGCAAAACTCACCCCAACACCAACTTATAAACTATCTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32241</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>181376</contig_pos>
        <strand></strand>
        <context>ccattatctc[C/G]gttcctgtaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCGCGTATAGCTTACTGGAAGCGCGCAGAGGTTGAAAGCTCCATTATCTC</left_flank>
        <right_flank>GTTCCTGTAAAAGATATCAAAAAGTTGTCAACTAATAAAATGTTTGTCAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGATGTCGTACTTGTGATCAAGAAGGAGCCAAGGAGCAGACCGAATTTCCATTGATTGGATTGAATTTATTCATCTCAAAACCAGTTCCATTCATCGAAGAGGTTCTTCAGAAAGTTTCGGAATTCGACTATCCAAAAAATCGGATCGCTTTGTACATCTATAACAATCAGCCATTCTCGATCAAGAACATTCAGGATTTCTTGAAGGATCATGGAAAATCGTACTACACGAAACGAATCATCAACGGAGTTACAGAGATTGGAGAACGGCAAGCAAGAAATGAAGCTATGTGAGTTTAGAACTTACATATCTCGATTCCTGTGGAAGCAATCAAAAAGTTGTCCACTTTTAAAATGTTTATCTTAGTTTCAGTAATATTTTATTAGTTGACAAATTTTTGATACCTCTCACAGGAAGCGAGATAATTCAGCCAAACCAAGCCCGCGATCGCGTATAGCTTACTGGAAGCGCGCAGAGGTTGAAAGCTCCATTATCTCCGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTAATAAAATGTTTGTCATAATATTTAAAATATTTTATCAGTTGACAACTTTACAATATTCTTCACAAGAATCGAGATATATGGGCTCGAAGTTAGGGGAATTTTTTCTATTGCAGGTTTTACAGTAATCTATGAATTTCTAAATTCTAAACTTTCAGCGATTGGTGCAAACAACGAGACACGGAATTTGCCTTCTTCATGGACGGAGATGCCTATTTCACTGAGCCAACAGTCATCAAGGACCTTATTCATTATTCGAAGAGTTATGATGTGTAAGTTGATTTTAAATTTGAAAACTTTTTTTTTTCAACAATTTACAAATTATTTTGCAGTCACTGAAAAAATGGTTTGGCAATTTTTGAAAAATCATTATTTTGTGAGAAAAGAGGATCTCATTTGCTCCTTTTTTGTCCAAAAACCAGATTTCTAGCTTGTCTTGGAGCCGAGATACAGCCTTCAGAAGTTTAGG</canonical>
            <polymorphic>GGGATGTCGTACTTGTGATCAAGAAGGAGCCAAGGAGCAGACCGAATTTCCATTGATTGGATTGAATTTATTCATCTCAAAACCAGTTCCATTCATCGAAGAGGTTCTTCAGAAAGTTTCGGAATTCGACTATCCAAAAAATCGGATCGCTTTGTACATCTATAACAATCAGCCATTCTCGATCAAGAACATTCAGGATTTCTTGAAGGATCATGGAAAATCGTACTACACGAAACGAATCATCAACGGAGTTACAGAGATTGGAGAACGGCAAGCAAGAAATGAAGCTATGTGAGTTTAGAACTTACATATCTCGATTCCTGTGGAAGCAATCAAAAAGTTGTCCACTTTTAAAATGTTTATCTTAGTTTCAGTAATATTTTATTAGTTGACAAATTTTTGATACCTCTCACAGGAAGCGAGATAATTCAGCCAAACCAAGCCCGCGATCGCGTATAGCTTACTGGAAGCGCGCAGAGGTTGAAAGCTCCATTATCTCSGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTAATAAAATGTTTGTCATAATATTTAAAATATTTTATCAGTTGACAACTTTACAATATTCTTCACAAGAATCGAGATATATGGGCTCGAAGTTAGGGGAATTTTTTCTATTGCAGGTTTTACAGTAATCTATGAATTTCTAAATTCTAAACTTTCAGCGATTGGTGCAAACAACGAGACACGGAATTTGCCTTCTTCATGGACGGAGATGCCTATTTCACTGAGCCAACAGTCATCAAGGACCTTATTCATTATTCGAAGAGTTATGATGTGTAAGTTGATTTTAAATTTGAAAACTTTTTTTTTTCAACAATTTACAAATTATTTTGCAGTCACTGAAAAAATGGTTTGGCAATTTTTGAAAAATCATTATTTTGTGAGAAAAGAGGATCTCATTTGCTCCTTTTTTGTCCAAAAACCAGATTTCTAGCTTGTCTTGGAGCCGAGATACAGCCTTCAGAAGTTTAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGAAGCTATGTGAGTTTAGAA</pcr_primer_p1>
		<pcr_primer_p2>CCAATCGCTGAAAGTTTAGA</pcr_primer_p2>
		<pcr_amplicon_size>417</pcr_amplicon_size>
		<canonical_amplicon>AAATGAAGCTATGTGAGTTTAGAACTTACATATCTCGATTCCTGTGGAAGCAATCAAAAAGTTGTCCACTTTTAAAATGTTTATCTTAGTTTCAGTAATATTTTATTAGTTGACAAATTTTTGATACCTCTCACAGGAAGCGAGATAATTCAGCCAAACCAAGCCCGCGATCGCGTATAGCTTACTGGAAGCGCGCAGAGGTTGAAAGCTCCATTATCTCCGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTAATAAAATGTTTGTCATAATATTTAAAATATTTTATCAGTTGACAACTTTACAATATTCTTCACAAGAATCGAGATATATGGGCTCGAAGTTAGGGGAATTTTTTCTATTGCAGGTTTTACAGTAATCTATGAATTTCTAAATTCTAAACTTTCAGCGATTGG</canonical_amplicon>
		<polymorphic_amplicon>AAATGAAGCTATGTGAGTTTAGAACTTACATATCTCGATTCCTGTGGAAGCAATCAAAAAGTTGTCCACTTTTAAAATGTTTATCTTAGTTTCAGTAATATTTTATTAGTTGACAAATTTTTGATACCTCTCACAGGAAGCGAGATAATTCAGCCAAACCAAGCCCGCGATCGCGTATAGCTTACTGGAAGCGCGCAGAGGTTGAAAGCTCCATTATCTCSGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTAATAAAATGTTTGTCATAATATTTAAAATATTTTATCAGTTGACAACTTTACAATATTCTTCACAAGAATCGAGATATATGGGCTCGAAGTTAGGGGAATTTTTTCTATTGCAGGTTTTACAGTAATCTATGAATTTCTAAATTCTAAACTTTCAGCGATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32242</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>181410</contig_pos>
        <strand></strand>
        <context>gttgtcaact[A/G]ataaaatgtt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGCTCCATTATCTCCGTTCCTGTAAAAGATATCAAAAAGTTGTCAACT</left_flank>
        <right_flank>ATAAAATGTTTGTCATAATATTTAAAATATTTTATCAGTTGACAACTTTA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCAGACCGAATTTCCATTGATTGGATTGAATTTATTCATCTCAAAACCAGTTCCATTCATCGAAGAGGTTCTTCAGAAAGTTTCGGAATTCGACTATCCAAAAAATCGGATCGCTTTGTACATCTATAACAATCAGCCATTCTCGATCAAGAACATTCAGGATTTCTTGAAGGATCATGGAAAATCGTACTACACGAAACGAATCATCAACGGAGTTACAGAGATTGGAGAACGGCAAGCAAGAAATGAAGCTATGTGAGTTTAGAACTTACATATCTCGATTCCTGTGGAAGCAATCAAAAAGTTGTCCACTTTTAAAATGTTTATCTTAGTTTCAGTAATATTTTATTAGTTGACAAATTTTTGATACCTCTCACAGGAAGCGAGATAATTCAGCCAAACCAAGCCCGCGATCGCGTATAGCTTACTGGAAGCGCGCAGAGGTTGAAAGCTCCATTATCTCCGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTAATAAAATGTTTGTCATAATATTTAAAATATTTTATCAGTTGACAACTTTACAATATTCTTCACAAGAATCGAGATATATGGGCTCGAAGTTAGGGGAATTTTTTCTATTGCAGGTTTTACAGTAATCTATGAATTTCTAAATTCTAAACTTTCAGCGATTGGTGCAAACAACGAGACACGGAATTTGCCTTCTTCATGGACGGAGATGCCTATTTCACTGAGCCAACAGTCATCAAGGACCTTATTCATTATTCGAAGAGTTATGATGTGTAAGTTGATTTTAAATTTGAAAACTTTTTTTTTTCAACAATTTACAAATTATTTTGCAGTCACTGAAAAAATGGTTTGGCAATTTTTGAAAAATCATTATTTTGTGAGAAAAGAGGATCTCATTTGCTCCTTTTTTGTCCAAAAACCAGATTTCTAGCTTGTCTTGGAGCCGAGATACAGCCTTCAGAAGTTTAGGAGGCCAGAGACGCAGCGTGTCTCGTTGTCTGCGT</canonical>
            <polymorphic>GAGCAGACCGAATTTCCATTGATTGGATTGAATTTATTCATCTCAAAACCAGTTCCATTCATCGAAGAGGTTCTTCAGAAAGTTTCGGAATTCGACTATCCAAAAAATCGGATCGCTTTGTACATCTATAACAATCAGCCATTCTCGATCAAGAACATTCAGGATTTCTTGAAGGATCATGGAAAATCGTACTACACGAAACGAATCATCAACGGAGTTACAGAGATTGGAGAACGGCAAGCAAGAAATGAAGCTATGTGAGTTTAGAACTTACATATCTCGATTCCTGTGGAAGCAATCAAAAAGTTGTCCACTTTTAAAATGTTTATCTTAGTTTCAGTAATATTTTATTAGTTGACAAATTTTTGATACCTCTCACAGGAAGCGAGATAATTCAGCCAAACCAAGCCCGCGATCGCGTATAGCTTACTGGAAGCGCGCAGAGGTTGAAAGCTCCATTATCTCCGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTRATAAAATGTTTGTCATAATATTTAAAATATTTTATCAGTTGACAACTTTACAATATTCTTCACAAGAATCGAGATATATGGGCTCGAAGTTAGGGGAATTTTTTCTATTGCAGGTTTTACAGTAATCTATGAATTTCTAAATTCTAAACTTTCAGCGATTGGTGCAAACAACGAGACACGGAATTTGCCTTCTTCATGGACGGAGATGCCTATTTCACTGAGCCAACAGTCATCAAGGACCTTATTCATTATTCGAAGAGTTATGATGTGTAAGTTGATTTTAAATTTGAAAACTTTTTTTTTTCAACAATTTACAAATTATTTTGCAGTCACTGAAAAAATGGTTTGGCAATTTTTGAAAAATCATTATTTTGTGAGAAAAGAGGATCTCATTTGCTCCTTTTTTGTCCAAAAACCAGATTTCTAGCTTGTCTTGGAGCCGAGATACAGCCTTCAGAAGTTTAGGAGGCCAGAGACGCAGCGTGTCTCGTTGTCTGCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGAAGCTATGTGAGTTTAGAA</pcr_primer_p1>
		<pcr_primer_p2>CCAATCGCTGAAAGTTTAGA</pcr_primer_p2>
		<pcr_amplicon_size>417</pcr_amplicon_size>
		<canonical_amplicon>AAATGAAGCTATGTGAGTTTAGAACTTACATATCTCGATTCCTGTGGAAGCAATCAAAAAGTTGTCCACTTTTAAAATGTTTATCTTAGTTTCAGTAATATTTTATTAGTTGACAAATTTTTGATACCTCTCACAGGAAGCGAGATAATTCAGCCAAACCAAGCCCGCGATCGCGTATAGCTTACTGGAAGCGCGCAGAGGTTGAAAGCTCCATTATCTCCGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTAATAAAATGTTTGTCATAATATTTAAAATATTTTATCAGTTGACAACTTTACAATATTCTTCACAAGAATCGAGATATATGGGCTCGAAGTTAGGGGAATTTTTTCTATTGCAGGTTTTACAGTAATCTATGAATTTCTAAATTCTAAACTTTCAGCGATTGG</canonical_amplicon>
		<polymorphic_amplicon>AAATGAAGCTATGTGAGTTTAGAACTTACATATCTCGATTCCTGTGGAAGCAATCAAAAAGTTGTCCACTTTTAAAATGTTTATCTTAGTTTCAGTAATATTTTATTAGTTGACAAATTTTTGATACCTCTCACAGGAAGCGAGATAATTCAGCCAAACCAAGCCCGCGATCGCGTATAGCTTACTGGAAGCGCGCAGAGGTTGAAAGCTCCATTATCTCCGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTRATAAAATGTTTGTCATAATATTTAAAATATTTTATCAGTTGACAACTTTACAATATTCTTCACAAGAATCGAGATATATGGGCTCGAAGTTAGGGGAATTTTTTCTATTGCAGGTTTTACAGTAATCTATGAATTTCTAAATTCTAAACTTTCAGCGATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32243</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>181423</contig_pos>
        <strand></strand>
        <context>aaaatgtttg[T/C]cataatattt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTCCGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTAATAAAATGTTTG</left_flank>
        <right_flank>CATAATATTTAAAATATTTTATCAGTTGACAACTTTACAATATTCTTCAC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCATTGATTGGATTGAATTTATTCATCTCAAAACCAGTTCCATTCATCGAAGAGGTTCTTCAGAAAGTTTCGGAATTCGACTATCCAAAAAATCGGATCGCTTTGTACATCTATAACAATCAGCCATTCTCGATCAAGAACATTCAGGATTTCTTGAAGGATCATGGAAAATCGTACTACACGAAACGAATCATCAACGGAGTTACAGAGATTGGAGAACGGCAAGCAAGAAATGAAGCTATGTGAGTTTAGAACTTACATATCTCGATTCCTGTGGAAGCAATCAAAAAGTTGTCCACTTTTAAAATGTTTATCTTAGTTTCAGTAATATTTTATTAGTTGACAAATTTTTGATACCTCTCACAGGAAGCGAGATAATTCAGCCAAACCAAGCCCGCGATCGCGTATAGCTTACTGGAAGCGCGCAGAGGTTGAAAGCTCCATTATCTCCGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTAATAAAATGTTTGTCATAATATTTAAAATATTTTATCAGTTGACAACTTTACAATATTCTTCACAAGAATCGAGATATATGGGCTCGAAGTTAGGGGAATTTTTTCTATTGCAGGTTTTACAGTAATCTATGAATTTCTAAATTCTAAACTTTCAGCGATTGGTGCAAACAACGAGACACGGAATTTGCCTTCTTCATGGACGGAGATGCCTATTTCACTGAGCCAACAGTCATCAAGGACCTTATTCATTATTCGAAGAGTTATGATGTGTAAGTTGATTTTAAATTTGAAAACTTTTTTTTTTCAACAATTTACAAATTATTTTGCAGTCACTGAAAAAATGGTTTGGCAATTTTTGAAAAATCATTATTTTGTGAGAAAAGAGGATCTCATTTGCTCCTTTTTTGTCCAAAAACCAGATTTCTAGCTTGTCTTGGAGCCGAGATACAGCCTTCAGAAGTTTAGGAGGCCAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCATCTCCAA</canonical>
            <polymorphic>TTCCATTGATTGGATTGAATTTATTCATCTCAAAACCAGTTCCATTCATCGAAGAGGTTCTTCAGAAAGTTTCGGAATTCGACTATCCAAAAAATCGGATCGCTTTGTACATCTATAACAATCAGCCATTCTCGATCAAGAACATTCAGGATTTCTTGAAGGATCATGGAAAATCGTACTACACGAAACGAATCATCAACGGAGTTACAGAGATTGGAGAACGGCAAGCAAGAAATGAAGCTATGTGAGTTTAGAACTTACATATCTCGATTCCTGTGGAAGCAATCAAAAAGTTGTCCACTTTTAAAATGTTTATCTTAGTTTCAGTAATATTTTATTAGTTGACAAATTTTTGATACCTCTCACAGGAAGCGAGATAATTCAGCCAAACCAAGCCCGCGATCGCGTATAGCTTACTGGAAGCGCGCAGAGGTTGAAAGCTCCATTATCTCCGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTAATAAAATGTTTGYCATAATATTTAAAATATTTTATCAGTTGACAACTTTACAATATTCTTCACAAGAATCGAGATATATGGGCTCGAAGTTAGGGGAATTTTTTCTATTGCAGGTTTTACAGTAATCTATGAATTTCTAAATTCTAAACTTTCAGCGATTGGTGCAAACAACGAGACACGGAATTTGCCTTCTTCATGGACGGAGATGCCTATTTCACTGAGCCAACAGTCATCAAGGACCTTATTCATTATTCGAAGAGTTATGATGTGTAAGTTGATTTTAAATTTGAAAACTTTTTTTTTTCAACAATTTACAAATTATTTTGCAGTCACTGAAAAAATGGTTTGGCAATTTTTGAAAAATCATTATTTTGTGAGAAAAGAGGATCTCATTTGCTCCTTTTTTGTCCAAAAACCAGATTTCTAGCTTGTCTTGGAGCCGAGATACAGCCTTCAGAAGTTTAGGAGGCCAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCATCTCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGAAGCTATGTGAGTTTAGAA</pcr_primer_p1>
		<pcr_primer_p2>CCAATCGCTGAAAGTTTAGA</pcr_primer_p2>
		<pcr_amplicon_size>417</pcr_amplicon_size>
		<canonical_amplicon>AAATGAAGCTATGTGAGTTTAGAACTTACATATCTCGATTCCTGTGGAAGCAATCAAAAAGTTGTCCACTTTTAAAATGTTTATCTTAGTTTCAGTAATATTTTATTAGTTGACAAATTTTTGATACCTCTCACAGGAAGCGAGATAATTCAGCCAAACCAAGCCCGCGATCGCGTATAGCTTACTGGAAGCGCGCAGAGGTTGAAAGCTCCATTATCTCCGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTAATAAAATGTTTGTCATAATATTTAAAATATTTTATCAGTTGACAACTTTACAATATTCTTCACAAGAATCGAGATATATGGGCTCGAAGTTAGGGGAATTTTTTCTATTGCAGGTTTTACAGTAATCTATGAATTTCTAAATTCTAAACTTTCAGCGATTGG</canonical_amplicon>
		<polymorphic_amplicon>AAATGAAGCTATGTGAGTTTAGAACTTACATATCTCGATTCCTGTGGAAGCAATCAAAAAGTTGTCCACTTTTAAAATGTTTATCTTAGTTTCAGTAATATTTTATTAGTTGACAAATTTTTGATACCTCTCACAGGAAGCGAGATAATTCAGCCAAACCAAGCCCGCGATCGCGTATAGCTTACTGGAAGCGCGCAGAGGTTGAAAGCTCCATTATCTCCGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTAATAAAATGTTTGYCATAATATTTAAAATATTTTATCAGTTGACAACTTTACAATATTCTTCACAAGAATCGAGATATATGGGCTCGAAGTTAGGGGAATTTTTTCTATTGCAGGTTTTACAGTAATCTATGAATTTCTAAATTCTAAACTTTCAGCGATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32244</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>181437</contig_pos>
        <strand></strand>
        <context>aatatttaaa[A/C]tattttatca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGATATCAAAAAGTTGTCAACTAATAAAATGTTTGTCATAATATTTAAA</left_flank>
        <right_flank>TATTTTATCAGTTGACAACTTTACAATATTCTTCACAAGAATCGAGATAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAATTTATTCATCTCAAAACCAGTTCCATTCATCGAAGAGGTTCTTCAGAAAGTTTCGGAATTCGACTATCCAAAAAATCGGATCGCTTTGTACATCTATAACAATCAGCCATTCTCGATCAAGAACATTCAGGATTTCTTGAAGGATCATGGAAAATCGTACTACACGAAACGAATCATCAACGGAGTTACAGAGATTGGAGAACGGCAAGCAAGAAATGAAGCTATGTGAGTTTAGAACTTACATATCTCGATTCCTGTGGAAGCAATCAAAAAGTTGTCCACTTTTAAAATGTTTATCTTAGTTTCAGTAATATTTTATTAGTTGACAAATTTTTGATACCTCTCACAGGAAGCGAGATAATTCAGCCAAACCAAGCCCGCGATCGCGTATAGCTTACTGGAAGCGCGCAGAGGTTGAAAGCTCCATTATCTCCGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTAATAAAATGTTTGTCATAATATTTAAAATATTTTATCAGTTGACAACTTTACAATATTCTTCACAAGAATCGAGATATATGGGCTCGAAGTTAGGGGAATTTTTTCTATTGCAGGTTTTACAGTAATCTATGAATTTCTAAATTCTAAACTTTCAGCGATTGGTGCAAACAACGAGACACGGAATTTGCCTTCTTCATGGACGGAGATGCCTATTTCACTGAGCCAACAGTCATCAAGGACCTTATTCATTATTCGAAGAGTTATGATGTGTAAGTTGATTTTAAATTTGAAAACTTTTTTTTTTCAACAATTTACAAATTATTTTGCAGTCACTGAAAAAATGGTTTGGCAATTTTTGAAAAATCATTATTTTGTGAGAAAAGAGGATCTCATTTGCTCCTTTTTTGTCCAAAAACCAGATTTCTAGCTTGTCTTGGAGCCGAGATACAGCCTTCAGAAGTTTAGGAGGCCAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCATCTCCAAACTTTAAGCGGCTT</canonical>
            <polymorphic>TTGAATTTATTCATCTCAAAACCAGTTCCATTCATCGAAGAGGTTCTTCAGAAAGTTTCGGAATTCGACTATCCAAAAAATCGGATCGCTTTGTACATCTATAACAATCAGCCATTCTCGATCAAGAACATTCAGGATTTCTTGAAGGATCATGGAAAATCGTACTACACGAAACGAATCATCAACGGAGTTACAGAGATTGGAGAACGGCAAGCAAGAAATGAAGCTATGTGAGTTTAGAACTTACATATCTCGATTCCTGTGGAAGCAATCAAAAAGTTGTCCACTTTTAAAATGTTTATCTTAGTTTCAGTAATATTTTATTAGTTGACAAATTTTTGATACCTCTCACAGGAAGCGAGATAATTCAGCCAAACCAAGCCCGCGATCGCGTATAGCTTACTGGAAGCGCGCAGAGGTTGAAAGCTCCATTATCTCCGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTAATAAAATGTTTGTCATAATATTTAAAMTATTTTATCAGTTGACAACTTTACAATATTCTTCACAAGAATCGAGATATATGGGCTCGAAGTTAGGGGAATTTTTTCTATTGCAGGTTTTACAGTAATCTATGAATTTCTAAATTCTAAACTTTCAGCGATTGGTGCAAACAACGAGACACGGAATTTGCCTTCTTCATGGACGGAGATGCCTATTTCACTGAGCCAACAGTCATCAAGGACCTTATTCATTATTCGAAGAGTTATGATGTGTAAGTTGATTTTAAATTTGAAAACTTTTTTTTTTCAACAATTTACAAATTATTTTGCAGTCACTGAAAAAATGGTTTGGCAATTTTTGAAAAATCATTATTTTGTGAGAAAAGAGGATCTCATTTGCTCCTTTTTTGTCCAAAAACCAGATTTCTAGCTTGTCTTGGAGCCGAGATACAGCCTTCAGAAGTTTAGGAGGCCAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCATCTCCAAACTTTAAGCGGCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>473 317 175 26 9</canonical_bands>
                <polymorphic_bands>473 317 175 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGAAGCTATGTGAGTTTAGAA</pcr_primer_p1>
		<pcr_primer_p2>CCAATCGCTGAAAGTTTAGA</pcr_primer_p2>
		<pcr_amplicon_size>417</pcr_amplicon_size>
		<canonical_amplicon>AAATGAAGCTATGTGAGTTTAGAACTTACATATCTCGATTCCTGTGGAAGCAATCAAAAAGTTGTCCACTTTTAAAATGTTTATCTTAGTTTCAGTAATATTTTATTAGTTGACAAATTTTTGATACCTCTCACAGGAAGCGAGATAATTCAGCCAAACCAAGCCCGCGATCGCGTATAGCTTACTGGAAGCGCGCAGAGGTTGAAAGCTCCATTATCTCCGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTAATAAAATGTTTGTCATAATATTTAAAATATTTTATCAGTTGACAACTTTACAATATTCTTCACAAGAATCGAGATATATGGGCTCGAAGTTAGGGGAATTTTTTCTATTGCAGGTTTTACAGTAATCTATGAATTTCTAAATTCTAAACTTTCAGCGATTGG</canonical_amplicon>
		<polymorphic_amplicon>AAATGAAGCTATGTGAGTTTAGAACTTACATATCTCGATTCCTGTGGAAGCAATCAAAAAGTTGTCCACTTTTAAAATGTTTATCTTAGTTTCAGTAATATTTTATTAGTTGACAAATTTTTGATACCTCTCACAGGAAGCGAGATAATTCAGCCAAACCAAGCCCGCGATCGCGTATAGCTTACTGGAAGCGCGCAGAGGTTGAAAGCTCCATTATCTCCGTTCCTGTAAAAGATATCAAAAAGTTGTCAACTAATAAAATGTTTGTCATAATATTTAAAMTATTTTATCAGTTGACAACTTTACAATATTCTTCACAAGAATCGAGATATATGGGCTCGAAGTTAGGGGAATTTTTTCTATTGCAGGTTTTACAGTAATCTATGAATTTCTAAATTCTAAACTTTCAGCGATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32245</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>203917</contig_pos>
        <strand></strand>
        <context>ggcacattta[G/T]gatgtcttgc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAAATATTTTTGAAATTGCGATCAATAATTTATCAGTTGGCACATTTA</left_flank>
        <right_flank>GATGTCTTGCATAGGAGCCGAGATAATTGTGCTCAAAGTGCACTTATAGG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCTCATTCCTCTTCTCTTTCGCACGTTGTCGTTGCCCCGGGTGTTGCTCTGTGTCTGGCGGAGCTGGCGGAGATGAAGAAGAAGACGTCAAAAATAAAAAGTGCGTTTTAGAAAAAGAGGTGTGGGAGTGAGAGAAAAAAAACGAGTTCAAAGAATGTGCATTGGAAAGTTTTGGGGAATTTTTCGAAGCGAAAAAATAAGATTAGCGAGGAAAAGTGCACCTGGAAAATTGAAAATTTTGTGACTATACGAAAAAAGTCACAAAAATGAGGTGGGAATTAATCGAATGAAAATGTAAACTTCATTAAATGTTTGGTGAAACATTCAAAAAATTCTTCTTTTCAGATAGAAGAATGACTTGGGTGTTTCTGCTGGAAAATTTCAAAAACGTTAGCTTTGAGCTCAATTATCTCAATTCCTATGAAAGTTATCAAAAATTTGCCAACTGAAAAAATATTTTTGAAATTGCGATCAATAATTTATCAGTTGGCACATTTAGGATGTCTTGCATAGGAGCCGAGATAATTGTGCTCAAAGTGCACTTATAGGGTGGGCTTCTATTGAAACAAGTACGATAGTTACGCTCCAGCTCAATTATCTTAATTCCTATGAAAGATATAAAAAATTTGTCAACTGTAAAATTGTTCATTATAATATCAGCAATATTTTATCAGTTGACAAATTGGTGATATATCTCACAGGAACCGAGATAATAGACATCAAAGTTTTAGGGTGTTCGTCGAAGCTCTCAGAACGAAAATTACGGTAGTCTAAAACTTTTTTATTTTCAGAATTTTTGTTCTCGATTTCCGTGCGTTTGCAGTTTTATTTTCCGGCTGGTTCGTGGGGATTACAAACAGAATCAGTGAAAAATAAGAACAAAAACTCTGAAAGAAAATGTTGGGTTACGGTAGGTTTAGGTCTAGGACCTTCCACATCTCTGTTTTTTTCCCGTCTGGTGCTGTATTTCGTAGACCTCAATTACAAATTTACAATCTA</canonical>
            <polymorphic>CCCTCATTCCTCTTCTCTTTCGCACGTTGTCGTTGCCCCGGGTGTTGCTCTGTGTCTGGCGGAGCTGGCGGAGATGAAGAAGAAGACGTCAAAAATAAAAAGTGCGTTTTAGAAAAAGAGGTGTGGGAGTGAGAGAAAAAAAACGAGTTCAAAGAATGTGCATTGGAAAGTTTTGGGGAATTTTTCGAAGCGAAAAAATAAGATTAGCGAGGAAAAGTGCACCTGGAAAATTGAAAATTTTGTGACTATACGAAAAAAGTCACAAAAATGAGGTGGGAATTAATCGAATGAAAATGTAAACTTCATTAAATGTTTGGTGAAACATTCAAAAAATTCTTCTTTTCAGATAGAAGAATGACTTGGGTGTTTCTGCTGGAAAATTTCAAAAACGTTAGCTTTGAGCTCAATTATCTCAATTCCTATGAAAGTTATCAAAAATTTGCCAACTGAAAAAATATTTTTGAAATTGCGATCAATAATTTATCAGTTGGCACATTTAKGATGTCTTGCATAGGAGCCGAGATAATTGTGCTCAAAGTGCACTTATAGGGTGGGCTTCTATTGAAACAAGTACGATAGTTACGCTCCAGCTCAATTATCTTAATTCCTATGAAAGATATAAAAAATTTGTCAACTGTAAAATTGTTCATTATAATATCAGCAATATTTTATCAGTTGACAAATTGGTGATATATCTCACAGGAACCGAGATAATAGACATCAAAGTTTTAGGGTGTTCGTCGAAGCTCTCAGAACGAAAATTACGGTAGTCTAAAACTTTTTTATTTTCAGAATTTTTGTTCTCGATTTCCGTGCGTTTGCAGTTTTATTTTCCGGCTGGTTCGTGGGGATTACAAACAGAATCAGTGAAAAATAAGAACAAAAACTCTGAAAGAAAATGTTGGGTTACGGTAGGTTTAGGTCTAGGACCTTCCACATCTCTGTTTTTTTCCCGTCTGGTGCTGTATTTCGTAGACCTCAATTACAAATTTACAATCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTCAGATAGAAGAATGACTTG</pcr_primer_p1>
		<pcr_primer_p2>GAGCGTAACTATCGTACTTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTTTCAGATAGAAGAATGACTTGGGTGTTTCTGCTGGAAAATTTCAAAAACGTTAGCTTTGAGCTCAATTATCTCAATTCCTATGAAAGTTATCAAAAATTTGCCAACTGAAAAAATATTTTTGAAATTGCGATCAATAATTTATCAGTTGGCACATTTAGGATGTCTTGCATAGGAGCCGAGATAATTGTGCTCAAAGTGCACTTATAGGGTGGGCTTCTATTGAAACAAGTACGATAGTTACGCTC</canonical_amplicon>
		<polymorphic_amplicon>CTTTTCAGATAGAAGAATGACTTGGGTGTTTCTGCTGGAAAATTTCAAAAACGTTAGCTTTGAGCTCAATTATCTCAATTCCTATGAAAGTTATCAAAAATTTGCCAACTGAAAAAATATTTTTGAAATTGCGATCAATAATTTATCAGTTGGCACATTTAKGATGTCTTGCATAGGAGCCGAGATAATTGTGCTCAAAGTGCACTTATAGGGTGGGCTTCTATTGAAACAAGTACGATAGTTACGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32246</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>251744</contig_pos>
        <strand>+</strand>
        <context>TTCCATAAGT[A/G]ATAGAAGGGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATAGAAATGCCTTTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGT</left_flank>
        <right_flank>ATAGAAGGGCCCTCCAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCATAAATTTGCCAACTAATAAAATATTGGTGATATTATGATAAGTATTTTTATCAGTTGACAAGTTTTTAATATCTTTCATAAGAACCGAGATAACAGAGCTCAAAGTTGACGGTAGGTTGGCTTCTATTAGAGTAAATACGGTGAGCAGATTCCTAAAAAATAATTTTGAAAATTTCAATCCACTTTGAAAACGCTCATTTCTGGAAACTTCCAGAAATCTTCAAGATATTTTTGGATACCCGCCAAAACTGGAACTTCTAGACCACTCTAAAAAAGCCTCGGAAATTAAAAACGGAGGATTTTCAGTTTTGGTGGAAATTGTTTAAAAAATCGAGGCTATTCATTATTTACCAAAAACTTGCATAAGAAAGGCCGCCTTAATGCAATGGTCCCTCTAATAGAACGTCATTCCGAAGGTACCTTTCAGCAATAGAATGGCTCTTGTAATAGAAATGCCTTTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCCTCCAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATTCGGTTTCTTTTACGATTTTGTTTGTCTCTGTCTCTCACTTCCATTTTGGTAGTAGATACTTGAAGAAGAAGAAGCACTCCATACAAATTAGATCCGCTTTTTCTTCTTCTTTTTCTTTCAGAGTGAAGGAAGAAGAGGAAGAACATGATTTTAATTTCAAAGATGT</canonical>
            <polymorphic>TATCATAAATTTGCCAACTAATAAAATATTGGTGATATTATGATAAGTATTTTTATCAGTTGACAAGTTTTTAATATCTTTCATAAGAACCGAGATAACAGAGCTCAAAGTTGACGGTAGGTTGGCTTCTATTAGAGTAAATACGGTGAGCAGATTCCTAAAAAATAATTTTGAAAATTTCAATCCACTTTGAAAACGCTCATTTCTGGAAACTTCCAGAAATCTTCAAGATATTTTTGGATACCCGCCAAAACTGGAACTTCTAGACCACTCTAAAAAAGCCTCGGAAATTAAAAACGGAGGATTTTCAGTTTTGGTGGAAATTGTTTAAAAAATCGAGGCTATTCATTATTTACCAAAAACTTGCATAAGAAAGGCCGCCTTAATGCAATGGTCCCTCTAATAGAACGTCATTCCGAAGGTACCTTTCAGCAATAGAATGGCTCTTGTAATAGAAATGCCTTTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGTRATAGAAGGGCCCTCCAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATTCGGTTTCTTTTACGATTTTGTTTGTCTCTGTCTCTCACTTCCATTTTGGTAGTAGATACTTGAAGAAGAAGAAGCACTCCATACAAATTAGATCCGCTTTTTCTTCTTCTTTTTCTTTCAGAGTGAAGGAAGAAGAGGAAGAACATGATTTTAATTTCAAAGATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>157 114 83 81 70 66 62 49 49 41 39 39 34 29 28 24 19 9 7</canonical_bands>
                <polymorphic_bands>157 114 94 83 81 66 62 49 49 41 39 39 34 29 28 19 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTACCAAAAACTTGCATAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TGTAGTGCATTATCTGCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTTACCAAAAACTTGCATAAGAAAGGCCGCCTTAATGCAATGGTCCCTCTAATAGAACGTCATTCCGAAGGTACCTTTCAGCAATAGAATGGCTCTTGTAATAGAAATGCCTTTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCCTCCAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACA</canonical_amplicon>
		<polymorphic_amplicon>TTTACCAAAAACTTGCATAAGAAAGGCCGCCTTAATGCAATGGTCCCTCTAATAGAACGTCATTCCGAAGGTACCTTTCAGCAATAGAATGGCTCTTGTAATAGAAATGCCTTTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGTRATAGAAGGGCCCTCCAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32247</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>251756</contig_pos>
        <strand>+</strand>
        <context>TAGAAGGGCC[C/G]TYCAGAGGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTTTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCC</left_flank>
        <right_flank>TCCAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTTCTAATACAGGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCAACTAATAAAATATTGGTGATATTATGATAAGTATTTTTATCAGTTGACAAGTTTTTAATATCTTTCATAAGAACCGAGATAACAGAGCTCAAAGTTGACGGTAGGTTGGCTTCTATTAGAGTAAATACGGTGAGCAGATTCCTAAAAAATAATTTTGAAAATTTCAATCCACTTTGAAAACGCTCATTTCTGGAAACTTCCAGAAATCTTCAAGATATTTTTGGATACCCGCCAAAACTGGAACTTCTAGACCACTCTAAAAAAGCCTCGGAAATTAAAAACGGAGGATTTTCAGTTTTGGTGGAAATTGTTTAAAAAATCGAGGCTATTCATTATTTACCAAAAACTTGCATAAGAAAGGCCGCCTTAATGCAATGGTCCCTCTAATAGAACGTCATTCCGAAGGTACCTTTCAGCAATAGAATGGCTCTTGTAATAGAAATGCCTTTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCCTCCAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATTCGGTTTCTTTTACGATTTTGTTTGTCTCTGTCTCTCACTTCCATTTTGGTAGTAGATACTTGAAGAAGAAGAAGCACTCCATACAAATTAGATCCGCTTTTTCTTCTTCTTTTTCTTTCAGAGTGAAGGAAGAAGAGGAAGAACATGATTTTAATTTCAAAGATGTTGCCATTCGGCG</canonical>
            <polymorphic>GCCAACTAATAAAATATTGGTGATATTATGATAAGTATTTTTATCAGTTGACAAGTTTTTAATATCTTTCATAAGAACCGAGATAACAGAGCTCAAAGTTGACGGTAGGTTGGCTTCTATTAGAGTAAATACGGTGAGCAGATTCCTAAAAAATAATTTTGAAAATTTCAATCCACTTTGAAAACGCTCATTTCTGGAAACTTCCAGAAATCTTCAAGATATTTTTGGATACCCGCCAAAACTGGAACTTCTAGACCACTCTAAAAAAGCCTCGGAAATTAAAAACGGAGGATTTTCAGTTTTGGTGGAAATTGTTTAAAAAATCGAGGCTATTCATTATTTACCAAAAACTTGCATAAGAAAGGCCGCCTTAATGCAATGGTCCCTCTAATAGAACGTCATTCCGAAGGTACCTTTCAGCAATAGAATGGCTCTTGTAATAGAAATGCCTTTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCSTCCAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATTCGGTTTCTTTTACGATTTTGTTTGTCTCTGTCTCTCACTTCCATTTTGGTAGTAGATACTTGAAGAAGAAGAAGCACTCCATACAAATTAGATCCGCTTTTTCTTCTTCTTTTTCTTTCAGAGTGAAGGAAGAAGAGGAAGAACATGATTTTAATTTCAAAGATGTTGCCATTCGGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGGCCC</site>
                <isoschizomers>
                    <enzyme>ApaI</enzyme>
                    <enzyme>Bsp120I</enzyme>
                    <enzyme>PspOMI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>501 406 93</canonical_bands>
                <polymorphic_bands>907 93</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 406 93</canonical_bands>
                <polymorphic_bands>907 93</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>383 336 155 86 28 12</canonical_bands>
                <polymorphic_bands>383 336 155 98 28</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>384 335 130 114 37</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTACCAAAAACTTGCATAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TGTAGTGCATTATCTGCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTTACCAAAAACTTGCATAAGAAAGGCCGCCTTAATGCAATGGTCCCTCTAATAGAACGTCATTCCGAAGGTACCTTTCAGCAATAGAATGGCTCTTGTAATAGAAATGCCTTTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCCTCCAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACA</canonical_amplicon>
		<polymorphic_amplicon>TTTACCAAAAACTTGCATAAGAAAGGCCGCCTTAATGCAATGGTCCCTCTAATAGAACGTCATTCCGAAGGTACCTTTCAGCAATAGAATGGCTCTTGTAATAGAAATGCCTTTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCSTCCAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32248</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>251758</contig_pos>
        <strand>+</strand>
        <context>GAAGGGCCST[C/T]CAGAGGTACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCCT</left_flank>
        <right_flank>CAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTTCTAATACAGGTTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACTAATAAAATATTGGTGATATTATGATAAGTATTTTTATCAGTTGACAAGTTTTTAATATCTTTCATAAGAACCGAGATAACAGAGCTCAAAGTTGACGGTAGGTTGGCTTCTATTAGAGTAAATACGGTGAGCAGATTCCTAAAAAATAATTTTGAAAATTTCAATCCACTTTGAAAACGCTCATTTCTGGAAACTTCCAGAAATCTTCAAGATATTTTTGGATACCCGCCAAAACTGGAACTTCTAGACCACTCTAAAAAAGCCTCGGAAATTAAAAACGGAGGATTTTCAGTTTTGGTGGAAATTGTTTAAAAAATCGAGGCTATTCATTATTTACCAAAAACTTGCATAAGAAAGGCCGCCTTAATGCAATGGTCCCTCTAATAGAACGTCATTCCGAAGGTACCTTTCAGCAATAGAATGGCTCTTGTAATAGAAATGCCTTTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCCTCCAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATTCGGTTTCTTTTACGATTTTGTTTGTCTCTGTCTCTCACTTCCATTTTGGTAGTAGATACTTGAAGAAGAAGAAGCACTCCATACAAATTAGATCCGCTTTTTCTTCTTCTTTTTCTTTCAGAGTGAAGGAAGAAGAGGAAGAACATGATTTTAATTTCAAAGATGTTGCCATTCGGCGGA</canonical>
            <polymorphic>CAACTAATAAAATATTGGTGATATTATGATAAGTATTTTTATCAGTTGACAAGTTTTTAATATCTTTCATAAGAACCGAGATAACAGAGCTCAAAGTTGACGGTAGGTTGGCTTCTATTAGAGTAAATACGGTGAGCAGATTCCTAAAAAATAATTTTGAAAATTTCAATCCACTTTGAAAACGCTCATTTCTGGAAACTTCCAGAAATCTTCAAGATATTTTTGGATACCCGCCAAAACTGGAACTTCTAGACCACTCTAAAAAAGCCTCGGAAATTAAAAACGGAGGATTTTCAGTTTTGGTGGAAATTGTTTAAAAAATCGAGGCTATTCATTATTTACCAAAAACTTGCATAAGAAAGGCCGCCTTAATGCAATGGTCCCTCTAATAGAACGTCATTCCGAAGGTACCTTTCAGCAATAGAATGGCTCTTGTAATAGAAATGCCTTTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCCTYCAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATTCGGTTTCTTTTACGATTTTGTTTGTCTCTGTCTCTCACTTCCATTTTGGTAGTAGATACTTGAAGAAGAAGAAGCACTCCATACAAATTAGATCCGCTTTTTCTTCTTCTTTTTCTTTCAGAGTGAAGGAAGAAGAGGAAGAACATGATTTTAATTTCAAAGATGTTGCCATTCGGCGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>500 251 192 36 11 10</canonical_bands>
                <polymorphic_bands>751 192 36 11 10</polymorphic_bands>
            </assay>
            <assay>
                <site>CCANNNNNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>XcmI</enzyme>
                </isoschizomers>
                <canonical_bands>507 493</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTACCAAAAACTTGCATAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TGTAGTGCATTATCTGCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTTACCAAAAACTTGCATAAGAAAGGCCGCCTTAATGCAATGGTCCCTCTAATAGAACGTCATTCCGAAGGTACCTTTCAGCAATAGAATGGCTCTTGTAATAGAAATGCCTTTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCCTCCAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACA</canonical_amplicon>
		<polymorphic_amplicon>TTTACCAAAAACTTGCATAAGAAAGGCCGCCTTAATGCAATGGTCCCTCTAATAGAACGTCATTCCGAAGGTACCTTTCAGCAATAGAATGGCTCTTGTAATAGAAATGCCTTTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCCTYCAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32249</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>251776</contig_pos>
        <strand>+</strand>
        <context>ACCTTGGGAC[A/C]ATAGAAAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGAAATGTTCCATAAGTGATAGAAGGGCCCTCCAGAGGTACCTTGGGAC</left_flank>
        <right_flank>ATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATATTATGATAAGTATTTTTATCAGTTGACAAGTTTTTAATATCTTTCATAAGAACCGAGATAACAGAGCTCAAAGTTGACGGTAGGTTGGCTTCTATTAGAGTAAATACGGTGAGCAGATTCCTAAAAAATAATTTTGAAAATTTCAATCCACTTTGAAAACGCTCATTTCTGGAAACTTCCAGAAATCTTCAAGATATTTTTGGATACCCGCCAAAACTGGAACTTCTAGACCACTCTAAAAAAGCCTCGGAAATTAAAAACGGAGGATTTTCAGTTTTGGTGGAAATTGTTTAAAAAATCGAGGCTATTCATTATTTACCAAAAACTTGCATAAGAAAGGCCGCCTTAATGCAATGGTCCCTCTAATAGAACGTCATTCCGAAGGTACCTTTCAGCAATAGAATGGCTCTTGTAATAGAAATGCCTTTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCCTCCAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATTCGGTTTCTTTTACGATTTTGTTTGTCTCTGTCTCTCACTTCCATTTTGGTAGTAGATACTTGAAGAAGAAGAAGCACTCCATACAAATTAGATCCGCTTTTTCTTCTTCTTTTTCTTTCAGAGTGAAGGAAGAAGAGGAAGAACATGATTTTAATTTCAAAGATGTTGCCATTCGGCGGAAGAGGAAAAGAAGTAATT</canonical>
            <polymorphic>TGATATTATGATAAGTATTTTTATCAGTTGACAAGTTTTTAATATCTTTCATAAGAACCGAGATAACAGAGCTCAAAGTTGACGGTAGGTTGGCTTCTATTAGAGTAAATACGGTGAGCAGATTCCTAAAAAATAATTTTGAAAATTTCAATCCACTTTGAAAACGCTCATTTCTGGAAACTTCCAGAAATCTTCAAGATATTTTTGGATACCCGCCAAAACTGGAACTTCTAGACCACTCTAAAAAAGCCTCGGAAATTAAAAACGGAGGATTTTCAGTTTTGGTGGAAATTGTTTAAAAAATCGAGGCTATTCATTATTTACCAAAAACTTGCATAAGAAAGGCCGCCTTAATGCAATGGTCCCTCTAATAGAACGTCATTCCGAAGGTACCTTTCAGCAATAGAATGGCTCTTGTAATAGAAATGCCTTTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCCTCCAGAGGTACCTTGGGACMATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATTCGGTTTCTTTTACGATTTTGTTTGTCTCTGTCTCTCACTTCCATTTTGGTAGTAGATACTTGAAGAAGAAGAAGCACTCCATACAAATTAGATCCGCTTTTTCTTCTTCTTTTTCTTTCAGAGTGAAGGAAGAAGAGGAAGAACATGATTTTAATTTCAAAGATGTTGCCATTCGGCGGAAGAGGAAAAGAAGTAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTTTTGAAATGTTCCATAAGT</pcr_primer_p1>
		<pcr_primer_p2>TGAGATTTTAGAGTTTATCCTGTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCCTCCAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCA</canonical_amplicon>
		<polymorphic_amplicon>TTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCCTCCAGAGGTACCTTGGGACMATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32250</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>251789</contig_pos>
        <strand>+</strand>
        <context>AGAAAAGACG[A/G]CCCTTCTAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAGTGATAGAAGGGCCCTCCAGAGGTACCTTGGGACAATAGAAAAGACG</left_flank>
        <right_flank>CCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAA</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTATTTTTATCAGTTGACAAGTTTTTAATATCTTTCATAAGAACCGAGATAACAGAGCTCAAAGTTGACGGTAGGTTGGCTTCTATTAGAGTAAATACGGTGAGCAGATTCCTAAAAAATAATTTTGAAAATTTCAATCCACTTTGAAAACGCTCATTTCTGGAAACTTCCAGAAATCTTCAAGATATTTTTGGATACCCGCCAAAACTGGAACTTCTAGACCACTCTAAAAAAGCCTCGGAAATTAAAAACGGAGGATTTTCAGTTTTGGTGGAAATTGTTTAAAAAATCGAGGCTATTCATTATTTACCAAAAACTTGCATAAGAAAGGCCGCCTTAATGCAATGGTCCCTCTAATAGAACGTCATTCCGAAGGTACCTTTCAGCAATAGAATGGCTCTTGTAATAGAAATGCCTTTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCCTCCAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATTCGGTTTCTTTTACGATTTTGTTTGTCTCTGTCTCTCACTTCCATTTTGGTAGTAGATACTTGAAGAAGAAGAAGCACTCCATACAAATTAGATCCGCTTTTTCTTCTTCTTTTTCTTTCAGAGTGAAGGAAGAAGAGGAAGAACATGATTTTAATTTCAAAGATGTTGCCATTCGGCGGAAGAGGAAAAGAAGTAATTAAATTTTTTATTC</canonical>
            <polymorphic>AGTATTTTTATCAGTTGACAAGTTTTTAATATCTTTCATAAGAACCGAGATAACAGAGCTCAAAGTTGACGGTAGGTTGGCTTCTATTAGAGTAAATACGGTGAGCAGATTCCTAAAAAATAATTTTGAAAATTTCAATCCACTTTGAAAACGCTCATTTCTGGAAACTTCCAGAAATCTTCAAGATATTTTTGGATACCCGCCAAAACTGGAACTTCTAGACCACTCTAAAAAAGCCTCGGAAATTAAAAACGGAGGATTTTCAGTTTTGGTGGAAATTGTTTAAAAAATCGAGGCTATTCATTATTTACCAAAAACTTGCATAAGAAAGGCCGCCTTAATGCAATGGTCCCTCTAATAGAACGTCATTCCGAAGGTACCTTTCAGCAATAGAATGGCTCTTGTAATAGAAATGCCTTTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCCTCCAGAGGTACCTTGGGACAATAGAAAAGACGRCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATTCGGTTTCTTTTACGATTTTGTTTGTCTCTGTCTCTCACTTCCATTTTGGTAGTAGATACTTGAAGAAGAAGAAGCACTCCATACAAATTAGATCCGCTTTTTCTTCTTCTTTTTCTTTCAGAGTGAAGGAAGAAGAGGAAGAACATGATTTTAATTTCAAAGATGTTGCCATTCGGCGGAAGAGGAAAAGAAGTAATTAAATTTTTTATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 332 132 36</canonical_bands>
                <polymorphic_bands>536 332 132</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>391 156 109 66 66 60 58 36 36 22</canonical_bands>
                <polymorphic_bands>391 156 145 66 66 60 58 36 22</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>368 351 130 114 37</canonical_bands>
                <polymorphic_bands>368 351 167 114</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTTTTGAAATGTTCCATAAGT</pcr_primer_p1>
		<pcr_primer_p2>TGAGATTTTAGAGTTTATCCTGTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCCTCCAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCA</canonical_amplicon>
		<polymorphic_amplicon>TTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCCTCCAGAGGTACCTTGGGACAATAGAAAAGACGRCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32251</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>251885</contig_pos>
        <strand>+</strand>
        <context>TGGAAATTGG[A/T]AAAAAARCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGG</left_flank>
        <right_flank>AAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACGGTGAGCAGATTCCTAAAAAATAATTTTGAAAATTTCAATCCACTTTGAAAACGCTCATTTCTGGAAACTTCCAGAAATCTTCAAGATATTTTTGGATACCCGCCAAAACTGGAACTTCTAGACCACTCTAAAAAAGCCTCGGAAATTAAAAACGGAGGATTTTCAGTTTTGGTGGAAATTGTTTAAAAAATCGAGGCTATTCATTATTTACCAAAAACTTGCATAAGAAAGGCCGCCTTAATGCAATGGTCCCTCTAATAGAACGTCATTCCGAAGGTACCTTTCAGCAATAGAATGGCTCTTGTAATAGAAATGCCTTTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCCTCCAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATTCGGTTTCTTTTACGATTTTGTTTGTCTCTGTCTCTCACTTCCATTTTGGTAGTAGATACTTGAAGAAGAAGAAGCACTCCATACAAATTAGATCCGCTTTTTCTTCTTCTTTTTCTTTCAGAGTGAAGGAAGAAGAGGAAGAACATGATTTTAATTTCAAAGATGTTGCCATTCGGCGGAAGAGGAAAAGAAGTAATTAAATTTTTTATTCAAATTCAGAGGGGGAAACGAACAAGATTTACATAGGAAATTGGGCGTTAGACTGGTTGGGTATAGTTGGCTAGTTTCTCAGGTTGAGCTGATAAAA</canonical>
            <polymorphic>TACGGTGAGCAGATTCCTAAAAAATAATTTTGAAAATTTCAATCCACTTTGAAAACGCTCATTTCTGGAAACTTCCAGAAATCTTCAAGATATTTTTGGATACCCGCCAAAACTGGAACTTCTAGACCACTCTAAAAAAGCCTCGGAAATTAAAAACGGAGGATTTTCAGTTTTGGTGGAAATTGTTTAAAAAATCGAGGCTATTCATTATTTACCAAAAACTTGCATAAGAAAGGCCGCCTTAATGCAATGGTCCCTCTAATAGAACGTCATTCCGAAGGTACCTTTCAGCAATAGAATGGCTCTTGTAATAGAAATGCCTTTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCCTCCAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGWAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATTCGGTTTCTTTTACGATTTTGTTTGTCTCTGTCTCTCACTTCCATTTTGGTAGTAGATACTTGAAGAAGAAGAAGCACTCCATACAAATTAGATCCGCTTTTTCTTCTTCTTTTTCTTTCAGAGTGAAGGAAGAAGAGGAAGAACATGATTTTAATTTCAAAGATGTTGCCATTCGGCGGAAGAGGAAAAGAAGTAATTAAATTTTTTATTCAAATTCAGAGGGGGAAACGAACAAGATTTACATAGGAAATTGGGCGTTAGACTGGTTGGGTATAGTTGGCTAGTTTCTCAGGTTGAGCTGATAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGCAGATAATGCACTACAAGT</pcr_primer_p1>
		<pcr_primer_p2>AATGAGAAAAGAAACGAAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATT</canonical_amplicon>
		<polymorphic_amplicon>AATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGWAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32252</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>251892</contig_pos>
        <strand>+</strand>
        <context>TGGWAAAAAA[A/G]CAATGGCTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAA</left_flank>
        <right_flank>CAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCAGATTCCTAAAAAATAATTTTGAAAATTTCAATCCACTTTGAAAACGCTCATTTCTGGAAACTTCCAGAAATCTTCAAGATATTTTTGGATACCCGCCAAAACTGGAACTTCTAGACCACTCTAAAAAAGCCTCGGAAATTAAAAACGGAGGATTTTCAGTTTTGGTGGAAATTGTTTAAAAAATCGAGGCTATTCATTATTTACCAAAAACTTGCATAAGAAAGGCCGCCTTAATGCAATGGTCCCTCTAATAGAACGTCATTCCGAAGGTACCTTTCAGCAATAGAATGGCTCTTGTAATAGAAATGCCTTTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCCTCCAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATTCGGTTTCTTTTACGATTTTGTTTGTCTCTGTCTCTCACTTCCATTTTGGTAGTAGATACTTGAAGAAGAAGAAGCACTCCATACAAATTAGATCCGCTTTTTCTTCTTCTTTTTCTTTCAGAGTGAAGGAAGAAGAGGAAGAACATGATTTTAATTTCAAAGATGTTGCCATTCGGCGGAAGAGGAAAAGAAGTAATTAAATTTTTTATTCAAATTCAGAGGGGGAAACGAACAAGATTTACATAGGAAATTGGGCGTTAGACTGGTTGGGTATAGTTGGCTAGTTTCTCAGGTTGAGCTGATAAAAAATTATT</canonical>
            <polymorphic>AGCAGATTCCTAAAAAATAATTTTGAAAATTTCAATCCACTTTGAAAACGCTCATTTCTGGAAACTTCCAGAAATCTTCAAGATATTTTTGGATACCCGCCAAAACTGGAACTTCTAGACCACTCTAAAAAAGCCTCGGAAATTAAAAACGGAGGATTTTCAGTTTTGGTGGAAATTGTTTAAAAAATCGAGGCTATTCATTATTTACCAAAAACTTGCATAAGAAAGGCCGCCTTAATGCAATGGTCCCTCTAATAGAACGTCATTCCGAAGGTACCTTTCAGCAATAGAATGGCTCTTGTAATAGAAATGCCTTTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCCTCCAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAARCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATTCGGTTTCTTTTACGATTTTGTTTGTCTCTGTCTCTCACTTCCATTTTGGTAGTAGATACTTGAAGAAGAAGAAGCACTCCATACAAATTAGATCCGCTTTTTCTTCTTCTTTTTCTTTCAGAGTGAAGGAAGAAGAGGAAGAACATGATTTTAATTTCAAAGATGTTGCCATTCGGCGGAAGAGGAAAAGAAGTAATTAAATTTTTTATTCAAATTCAGAGGGGGAAACGAACAAGATTTACATAGGAAATTGGGCGTTAGACTGGTTGGGTATAGTTGGCTAGTTTCTCAGGTTGAGCTGATAAAAAATTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGCAGATAATGCACTACAAGT</pcr_primer_p1>
		<pcr_primer_p2>AATGAGAAAAGAAACGAAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATT</canonical_amplicon>
		<polymorphic_amplicon>AATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAARCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32253</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>251907</contig_pos>
        <strand></strand>
        <context>GGCTTGAAAT[C/T]CTCAAAWCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAAT</left_flank>
        <right_flank>CTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAATTTTGAAAATTTCAATCCACTTTGAAAACGCTCATTTCTGGAAACTTCCAGAAATCTTCAAGATATTTTTGGATACCCGCCAAAACTGGAACTTCTAGACCACTCTAAAAAAGCCTCGGAAATTAAAAACGGAGGATTTTCAGTTTTGGTGGAAATTGTTTAAAAAATCGAGGCTATTCATTATTTACCAAAAACTTGCATAAGAAAGGCCGCCTTAATGCAATGGTCCCTCTAATAGAACGTCATTCCGAAGGTACCTTTCAGCAATAGAATGGCTCTTGTAATAGAAATGCCTTTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCCTCCAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATTCGGTTTCTTTTACGATTTTGTTTGTCTCTGTCTCTCACTTCCATTTTGGTAGTAGATACTTGAAGAAGAAGAAGCACTCCATACAAATTAGATCCGCTTTTTCTTCTTCTTTTTCTTTCAGAGTGAAGGAAGAAGAGGAAGAACATGATTTTAATTTCAAAGATGTTGCCATTCGGCGGAAGAGGAAAAGAAGTAATTAAATTTTTTATTCAAATTCAGAGGGGGAAACGAACAAGATTTACATAGGAAATTGGGCGTTAGACTGGTTGGGTATAGTTGGCTAGTTTCTCAGGTTGAGCTGATAAAAAATTATTGATCATTTGATAGGT</canonical>
            <polymorphic>AATAATTTTGAAAATTTCAATCCACTTTGAAAACGCTCATTTCTGGAAACTTCCAGAAATCTTCAAGATATTTTTGGATACCCGCCAAAACTGGAACTTCTAGACCACTCTAAAAAAGCCTCGGAAATTAAAAACGGAGGATTTTCAGTTTTGGTGGAAATTGTTTAAAAAATCGAGGCTATTCATTATTTACCAAAAACTTGCATAAGAAAGGCCGCCTTAATGCAATGGTCCCTCTAATAGAACGTCATTCCGAAGGTACCTTTCAGCAATAGAATGGCTCTTGTAATAGAAATGCCTTTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCCTCCAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATYCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATTCGGTTTCTTTTACGATTTTGTTTGTCTCTGTCTCTCACTTCCATTTTGGTAGTAGATACTTGAAGAAGAAGAAGCACTCCATACAAATTAGATCCGCTTTTTCTTCTTCTTTTTCTTTCAGAGTGAAGGAAGAAGAGGAAGAACATGATTTTAATTTCAAAGATGTTGCCATTCGGCGGAAGAGGAAAAGAAGTAATTAAATTTTTTATTCAAATTCAGAGGGGGAAACGAACAAGATTTACATAGGAAATTGGGCGTTAGACTGGTTGGGTATAGTTGGCTAGTTTCTCAGGTTGAGCTGATAAAAAATTATTGATCATTTGATAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGCAGATAATGCACTACAAGT</pcr_primer_p1>
		<pcr_primer_p2>AATGAGAAAAGAAACGAAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATT</canonical_amplicon>
		<polymorphic_amplicon>AATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATYCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32254</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>251914</contig_pos>
        <strand></strand>
        <context>AATYCTCAAA[A/T]CTTGGTCCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAA</left_flank>
        <right_flank>CTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAAATTTCAATCCACTTTGAAAACGCTCATTTCTGGAAACTTCCAGAAATCTTCAAGATATTTTTGGATACCCGCCAAAACTGGAACTTCTAGACCACTCTAAAAAAGCCTCGGAAATTAAAAACGGAGGATTTTCAGTTTTGGTGGAAATTGTTTAAAAAATCGAGGCTATTCATTATTTACCAAAAACTTGCATAAGAAAGGCCGCCTTAATGCAATGGTCCCTCTAATAGAACGTCATTCCGAAGGTACCTTTCAGCAATAGAATGGCTCTTGTAATAGAAATGCCTTTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCCTCCAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATTCGGTTTCTTTTACGATTTTGTTTGTCTCTGTCTCTCACTTCCATTTTGGTAGTAGATACTTGAAGAAGAAGAAGCACTCCATACAAATTAGATCCGCTTTTTCTTCTTCTTTTTCTTTCAGAGTGAAGGAAGAAGAGGAAGAACATGATTTTAATTTCAAAGATGTTGCCATTCGGCGGAAGAGGAAAAGAAGTAATTAAATTTTTTATTCAAATTCAGAGGGGGAAACGAACAAGATTTACATAGGAAATTGGGCGTTAGACTGGTTGGGTATAGTTGGCTAGTTTCTCAGGTTGAGCTGATAAAAAATTATTGATCATTTGATAGGTTGGACCC</canonical>
            <polymorphic>TTGAAAATTTCAATCCACTTTGAAAACGCTCATTTCTGGAAACTTCCAGAAATCTTCAAGATATTTTTGGATACCCGCCAAAACTGGAACTTCTAGACCACTCTAAAAAAGCCTCGGAAATTAAAAACGGAGGATTTTCAGTTTTGGTGGAAATTGTTTAAAAAATCGAGGCTATTCATTATTTACCAAAAACTTGCATAAGAAAGGCCGCCTTAATGCAATGGTCCCTCTAATAGAACGTCATTCCGAAGGTACCTTTCAGCAATAGAATGGCTCTTGTAATAGAAATGCCTTTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCCTCCAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAWCTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATTCGGTTTCTTTTACGATTTTGTTTGTCTCTGTCTCTCACTTCCATTTTGGTAGTAGATACTTGAAGAAGAAGAAGCACTCCATACAAATTAGATCCGCTTTTTCTTCTTCTTTTTCTTTCAGAGTGAAGGAAGAAGAGGAAGAACATGATTTTAATTTCAAAGATGTTGCCATTCGGCGGAAGAGGAAAAGAAGTAATTAAATTTTTTATTCAAATTCAGAGGGGGAAACGAACAAGATTTACATAGGAAATTGGGCGTTAGACTGGTTGGGTATAGTTGGCTAGTTTCTCAGGTTGAGCTGATAAAAAATTATTGATCATTTGATAGGTTGGACCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGCAGATAATGCACTACAAGT</pcr_primer_p1>
		<pcr_primer_p2>AATGAGAAAAGAAACGAAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATT</canonical_amplicon>
		<polymorphic_amplicon>AATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAWCTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32255</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>251932</contig_pos>
        <strand>+</strand>
        <context>CCACCCAACT[C/T]YCCGTAGTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACT</left_flank>
        <right_flank>ACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAAAACGCTCATTTCTGGAAACTTCCAGAAATCTTCAAGATATTTTTGGATACCCGCCAAAACTGGAACTTCTAGACCACTCTAAAAAAGCCTCGGAAATTAAAAACGGAGGATTTTCAGTTTTGGTGGAAATTGTTTAAAAAATCGAGGCTATTCATTATTTACCAAAAACTTGCATAAGAAAGGCCGCCTTAATGCAATGGTCCCTCTAATAGAACGTCATTCCGAAGGTACCTTTCAGCAATAGAATGGCTCTTGTAATAGAAATGCCTTTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCCTCCAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATTCGGTTTCTTTTACGATTTTGTTTGTCTCTGTCTCTCACTTCCATTTTGGTAGTAGATACTTGAAGAAGAAGAAGCACTCCATACAAATTAGATCCGCTTTTTCTTCTTCTTTTTCTTTCAGAGTGAAGGAAGAAGAGGAAGAACATGATTTTAATTTCAAAGATGTTGCCATTCGGCGGAAGAGGAAAAGAAGTAATTAAATTTTTTATTCAAATTCAGAGGGGGAAACGAACAAGATTTACATAGGAAATTGGGCGTTAGACTGGTTGGGTATAGTTGGCTAGTTTCTCAGGTTGAGCTGATAAAAAATTATTGATCATTTGATAGGTTGGACCCGGGCGATCAAGTGGAACA</canonical>
            <polymorphic>TTTGAAAACGCTCATTTCTGGAAACTTCCAGAAATCTTCAAGATATTTTTGGATACCCGCCAAAACTGGAACTTCTAGACCACTCTAAAAAAGCCTCGGAAATTAAAAACGGAGGATTTTCAGTTTTGGTGGAAATTGTTTAAAAAATCGAGGCTATTCATTATTTACCAAAAACTTGCATAAGAAAGGCCGCCTTAATGCAATGGTCCCTCTAATAGAACGTCATTCCGAAGGTACCTTTCAGCAATAGAATGGCTCTTGTAATAGAAATGCCTTTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCCTCCAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTYACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATTCGGTTTCTTTTACGATTTTGTTTGTCTCTGTCTCTCACTTCCATTTTGGTAGTAGATACTTGAAGAAGAAGAAGCACTCCATACAAATTAGATCCGCTTTTTCTTCTTCTTTTTCTTTCAGAGTGAAGGAAGAAGAGGAAGAACATGATTTTAATTTCAAAGATGTTGCCATTCGGCGGAAGAGGAAAAGAAGTAATTAAATTTTTTATTCAAATTCAGAGGGGGAAACGAACAAGATTTACATAGGAAATTGGGCGTTAGACTGGTTGGGTATAGTTGGCTAGTTTCTCAGGTTGAGCTGATAAAAAATTATTGATCATTTGATAGGTTGGACCCGGGCGATCAAGTGGAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGCAGATAATGCACTACAAGT</pcr_primer_p1>
		<pcr_primer_p2>AATGAGAAAAGAAACGAAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATT</canonical_amplicon>
		<polymorphic_amplicon>AATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTYACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32256</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>251933</contig_pos>
        <strand>+</strand>
        <context>CACCCAACTY[C/T]CCGTAGTCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTT</left_flank>
        <right_flank>CCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAAAACGCTCATTTCTGGAAACTTCCAGAAATCTTCAAGATATTTTTGGATACCCGCCAAAACTGGAACTTCTAGACCACTCTAAAAAAGCCTCGGAAATTAAAAACGGAGGATTTTCAGTTTTGGTGGAAATTGTTTAAAAAATCGAGGCTATTCATTATTTACCAAAAACTTGCATAAGAAAGGCCGCCTTAATGCAATGGTCCCTCTAATAGAACGTCATTCCGAAGGTACCTTTCAGCAATAGAATGGCTCTTGTAATAGAAATGCCTTTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCCTCCAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATTCGGTTTCTTTTACGATTTTGTTTGTCTCTGTCTCTCACTTCCATTTTGGTAGTAGATACTTGAAGAAGAAGAAGCACTCCATACAAATTAGATCCGCTTTTTCTTCTTCTTTTTCTTTCAGAGTGAAGGAAGAAGAGGAAGAACATGATTTTAATTTCAAAGATGTTGCCATTCGGCGGAAGAGGAAAAGAAGTAATTAAATTTTTTATTCAAATTCAGAGGGGGAAACGAACAAGATTTACATAGGAAATTGGGCGTTAGACTGGTTGGGTATAGTTGGCTAGTTTCTCAGGTTGAGCTGATAAAAAATTATTGATCATTTGATAGGTTGGACCCGGGCGATCAAGTGGAACAA</canonical>
            <polymorphic>TTGAAAACGCTCATTTCTGGAAACTTCCAGAAATCTTCAAGATATTTTTGGATACCCGCCAAAACTGGAACTTCTAGACCACTCTAAAAAAGCCTCGGAAATTAAAAACGGAGGATTTTCAGTTTTGGTGGAAATTGTTTAAAAAATCGAGGCTATTCATTATTTACCAAAAACTTGCATAAGAAAGGCCGCCTTAATGCAATGGTCCCTCTAATAGAACGTCATTCCGAAGGTACCTTTCAGCAATAGAATGGCTCTTGTAATAGAAATGCCTTTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCCTCCAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTYCCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATTCGGTTTCTTTTACGATTTTGTTTGTCTCTGTCTCTCACTTCCATTTTGGTAGTAGATACTTGAAGAAGAAGAAGCACTCCATACAAATTAGATCCGCTTTTTCTTCTTCTTTTTCTTTCAGAGTGAAGGAAGAAGAGGAAGAACATGATTTTAATTTCAAAGATGTTGCCATTCGGCGGAAGAGGAAAAGAAGTAATTAAATTTTTTATTCAAATTCAGAGGGGGAAACGAACAAGATTTACATAGGAAATTGGGCGTTAGACTGGTTGGGTATAGTTGGCTAGTTTCTCAGGTTGAGCTGATAAAAAATTATTGATCATTTGATAGGTTGGACCCGGGCGATCAAGTGGAACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGCAGATAATGCACTACAAGT</pcr_primer_p1>
		<pcr_primer_p2>AATGAGAAAAGAAACGAAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATT</canonical_amplicon>
		<polymorphic_amplicon>AATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTYCCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32257</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>251948</contig_pos>
        <strand></strand>
        <context>AGTCCACCTC[C/T]CACAGGATAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTC</left_flank>
        <right_flank>CACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGGAAACTTCCAGAAATCTTCAAGATATTTTTGGATACCCGCCAAAACTGGAACTTCTAGACCACTCTAAAAAAGCCTCGGAAATTAAAAACGGAGGATTTTCAGTTTTGGTGGAAATTGTTTAAAAAATCGAGGCTATTCATTATTTACCAAAAACTTGCATAAGAAAGGCCGCCTTAATGCAATGGTCCCTCTAATAGAACGTCATTCCGAAGGTACCTTTCAGCAATAGAATGGCTCTTGTAATAGAAATGCCTTTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCCTCCAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATTCGGTTTCTTTTACGATTTTGTTTGTCTCTGTCTCTCACTTCCATTTTGGTAGTAGATACTTGAAGAAGAAGAAGCACTCCATACAAATTAGATCCGCTTTTTCTTCTTCTTTTTCTTTCAGAGTGAAGGAAGAAGAGGAAGAACATGATTTTAATTTCAAAGATGTTGCCATTCGGCGGAAGAGGAAAAGAAGTAATTAAATTTTTTATTCAAATTCAGAGGGGGAAACGAACAAGATTTACATAGGAAATTGGGCGTTAGACTGGTTGGGTATAGTTGGCTAGTTTCTCAGGTTGAGCTGATAAAAAATTATTGATCATTTGATAGGTTGGACCCGGGCGATCAAGTGGAACAAAGTGGCCAGCACCCT</canonical>
            <polymorphic>TCTGGAAACTTCCAGAAATCTTCAAGATATTTTTGGATACCCGCCAAAACTGGAACTTCTAGACCACTCTAAAAAAGCCTCGGAAATTAAAAACGGAGGATTTTCAGTTTTGGTGGAAATTGTTTAAAAAATCGAGGCTATTCATTATTTACCAAAAACTTGCATAAGAAAGGCCGCCTTAATGCAATGGTCCCTCTAATAGAACGTCATTCCGAAGGTACCTTTCAGCAATAGAATGGCTCTTGTAATAGAAATGCCTTTTTCAAAATGTGTTGTTTTGAAATGTTCCATAAGTGATAGAAGGGCCCTCCAGAGGTACCTTGGGACAATAGAAAAGACGGCCCTTCTAATACAGGTTTTAAGGTGTTTTTTTGCCAAAAAATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCYCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATTCGGTTTCTTTTACGATTTTGTTTGTCTCTGTCTCTCACTTCCATTTTGGTAGTAGATACTTGAAGAAGAAGAAGCACTCCATACAAATTAGATCCGCTTTTTCTTCTTCTTTTTCTTTCAGAGTGAAGGAAGAAGAGGAAGAACATGATTTTAATTTCAAAGATGTTGCCATTCGGCGGAAGAGGAAAAGAAGTAATTAAATTTTTTATTCAAATTCAGAGGGGGAAACGAACAAGATTTACATAGGAAATTGGGCGTTAGACTGGTTGGGTATAGTTGGCTAGTTTCTCAGGTTGAGCTGATAAAAAATTATTGATCATTTGATAGGTTGGACCCGGGCGATCAAGTGGAACAAAGTGGCCAGCACCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGCAGATAATGCACTACAAGT</pcr_primer_p1>
		<pcr_primer_p2>AATGAGAAAAGAAACGAAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCCCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATT</canonical_amplicon>
		<polymorphic_amplicon>AATGCAGATAATGCACTACAAGTTTTTGGTCGTAATCCTATTTTCATGGAAATTGGAAAAAAAGCAATGGCTTGAAATCCTCAAAACTTGGTCCCACCCAACTTACCGTAGTCCACCTCYCACAGGATAAACTCTAAAATCTCAAAAAATAGTCAAGTATAGTCAAAAAAAAGAGGTAAAAGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32258</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>252508</contig_pos>
        <strand></strand>
        <context>gctacatcaa[A/G]attgttaact</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACGCTATCTTTAAAGGCGCATATCTCAAAAACTAAAAACGCTACATCAA</left_flank>
        <right_flank>ATTGTTAACTATAAAAATATAAAGCATAATATTCTACACATTTCGTTTGT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATTCGGTTTCTTTTACGATTTTGTTTGTCTCTGTCTCTCACTTCCATTTTGGTAGTAGATACTTGAAGAAGAAGAAGCACTCCATACAAATTAGATCCGCTTTTTCTTCTTCTTTTTCTTTCAGAGTGAAGGAAGAAGAGGAAGAACATGATTTTAATTTCAAAGATGTTGCCATTCGGCGGAAGAGGAAAAGAAGTAATTAAATTTTTTATTCAAATTCAGAGGGGGAAACGAACAAGATTTACATAGGAAATTGGGCGTTAGACTGGTTGGGTATAGTTGGCTAGTTTCTCAGGTTGAGCTGATAAAAAATTATTGATCATTTGATAGGTTGGACCCGGGCGATCAAGTGGAACAAAGTGGCCAGCACCCTGAAATAAGAAACGCTATCTTTAAAGGCGCATATCTCAAAAACTAAAAACGCTACATCAAAATTGTTAACTATAAAAATATAAAGCATAATATTCTACACATTTCGTTTGTTGACAGCTTTTTGGTAGAGCTCTTAGTTTTTGAGATATGCACCTTTAAAGTTAGGGTACCCCCAGAAGGACGCACCTCCATAGAGAGTCTACTTGAGACGCAGAGAAACGAGAATGTCTGTTTTCTCTGTGTATCTTATCTTTCACTCACTTTTACTGTAACAACATCAATTGAAATTTTCGCCCCACGCTGATTTGCTCCTTCGTATCTCATATAATATCCTGCCAACACCTTGTTGTCTGAATAGTACCATGGCTGATATTTCTGAGTCTAAAAACAAATCATCAATAGAGCGCACTTCTAACATACAAACCAACCTTTTGCAACCTATTTTTCTTTGCCAAATCTCTCACAAAATATCCATCTGCCAGATAGTTACAAGCTGTGTCCACATCTCCATTGTAGATCAAAACTCGGAACGCCGGACCCGTGTAATTATTGAAAATCTTG</canonical>
            <polymorphic>AGTGAGGTACTTTTGGTTTGGGTTTCCTCTCACTAATCTCACCAATAAAATCTTCGTTTCTTTTCTCATTCGGTTTCTTTTACGATTTTGTTTGTCTCTGTCTCTCACTTCCATTTTGGTAGTAGATACTTGAAGAAGAAGAAGCACTCCATACAAATTAGATCCGCTTTTTCTTCTTCTTTTTCTTTCAGAGTGAAGGAAGAAGAGGAAGAACATGATTTTAATTTCAAAGATGTTGCCATTCGGCGGAAGAGGAAAAGAAGTAATTAAATTTTTTATTCAAATTCAGAGGGGGAAACGAACAAGATTTACATAGGAAATTGGGCGTTAGACTGGTTGGGTATAGTTGGCTAGTTTCTCAGGTTGAGCTGATAAAAAATTATTGATCATTTGATAGGTTGGACCCGGGCGATCAAGTGGAACAAAGTGGCCAGCACCCTGAAATAAGAAACGCTATCTTTAAAGGCGCATATCTCAAAAACTAAAAACGCTACATCAARATTGTTAACTATAAAAATATAAAGCATAATATTCTACACATTTCGTTTGTTGACAGCTTTTTGGTAGAGCTCTTAGTTTTTGAGATATGCACCTTTAAAGTTAGGGTACCCCCAGAAGGACGCACCTCCATAGAGAGTCTACTTGAGACGCAGAGAAACGAGAATGTCTGTTTTCTCTGTGTATCTTATCTTTCACTCACTTTTACTGTAACAACATCAATTGAAATTTTCGCCCCACGCTGATTTGCTCCTTCGTATCTCATATAATATCCTGCCAACACCTTGTTGTCTGAATAGTACCATGGCTGATATTTCTGAGTCTAAAAACAAATCATCAATAGAGCGCACTTCTAACATACAAACCAACCTTTTGCAACCTATTTTTCTTTGCCAAATCTCTCACAAAATATCCATCTGCCAGATAGTTACAAGCTGTGTCCACATCTCCATTGTAGATCAAAACTCGGAACGCCGGACCCGTGTAATTATTGAAAATCTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>259 219 155 122 67 59 42 36 17 13 6 5</canonical_bands>
                <polymorphic_bands>341 259 155 67 59 42 36 17 13 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCAAGTGGAACAAAGTGG</pcr_primer_p1>
		<pcr_primer_p2>TGTTACAGTAAAAGTGAGTGAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>GATCAAGTGGAACAAAGTGGCCAGCACCCTGAAATAAGAAACGCTATCTTTAAAGGCGCATATCTCAAAAACTAAAAACGCTACATCAAAATTGTTAACTATAAAAATATAAAGCATAATATTCTACACATTTCGTTTGTTGACAGCTTTTTGGTAGAGCTCTTAGTTTTTGAGATATGCACCTTTAAAGTTAGGGTACCCCCAGAAGGACGCACCTCCATAGAGAGTCTACTTGAGACGCAGAGAAACGAGAATGTCTGTTTTCTCTGTGTATCTTATCTTTCACTCACTTTTACTGTAACA</canonical_amplicon>
		<polymorphic_amplicon>GATCAAGTGGAACAAAGTGGCCAGCACCCTGAAATAAGAAACGCTATCTTTAAAGGCGCATATCTCAAAAACTAAAAACGCTACATCAARATTGTTAACTATAAAAATATAAAGCATAATATTCTACACATTTCGTTTGTTGACAGCTTTTTGGTAGAGCTCTTAGTTTTTGAGATATGCACCTTTAAAGTTAGGGTACCCCCAGAAGGACGCACCTCCATAGAGAGTCTACTTGAGACGCAGAGAAACGAGAATGTCTGTTTTCTCTGTGTATCTTATCTTTCACTCACTTTTACTGTAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32259</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>254293</contig_pos>
        <strand></strand>
        <context>CCACATTCTG[A/T]TTTGTTGTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTCTCGGTGTACTGCCCCAAAAGTGGTTCAATCAGTTGCCCACATTCTG</left_flank>
        <right_flank>TTTGTTGTCAACTTGATAGTCCATTTTGTTTGTAGTTGTCATGAATTGCT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACATATTGTGGGCGGAGGCTAGTAGTGTTTAGGTTCAATATGATCCAGTTTTTGCTCTGAATTCAATTTCAGCACGTTCGAAACTTTAAAATCAGCCCGAACACGGATAGGCCCCGCCCACTTTGAATTCCTATCTTGGACACGCGACTCACGACCGCAACGCTTCCGAAAAAACCTAGGTGCGGAGCCTAGTCGTGTTTAGGCTTATTTTGAAGCTAACAGCAAGGCAAAGTCGTTGATCTCTGTTGAAAATGATTTGAATCAAAACTAACCGAGTTGTGGTAGTTTTGAGAAGAAACGAATAACTTTAAATTTCGATTACGTGCCTATTTACTCCAAAATGTTAAGATCCATTGCTCTAAAAGCCTGCGCATTAAATTTTCTAAGTTGATCATTACACCCTGATTTATATTTCTCATTAAAAATTATTCCAAACTAACCCCTCCCAATTCTCGGTGTACTGCCCCAAAAGTGGTTCAATCAGTTGCCCACATTCTGATTTGTTGTCAACTTGATAGTCCATTTTGTTTGTAGTTGTCATGAATTGCTGAAAAAACGGTATTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCAAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTAATTGCGTCCCATTCACTGAAAATAGTGATGCTTCATCAATTTTTCTTGCTAATCAACTAACTCTGGAGATGCTCTCGCATGATATGCGCCCCATAGAATCATA</canonical>
            <polymorphic>TACATATTGTGGGCGGAGGCTAGTAGTGTTTAGGTTCAATATGATCCAGTTTTTGCTCTGAATTCAATTTCAGCACGTTCGAAACTTTAAAATCAGCCCGAACACGGATAGGCCCCGCCCACTTTGAATTCCTATCTTGGACACGCGACTCACGACCGCAACGCTTCCGAAAAAACCTAGGTGCGGAGCCTAGTCGTGTTTAGGCTTATTTTGAAGCTAACAGCAAGGCAAAGTCGTTGATCTCTGTTGAAAATGATTTGAATCAAAACTAACCGAGTTGTGGTAGTTTTGAGAAGAAACGAATAACTTTAAATTTCGATTACGTGCCTATTTACTCCAAAATGTTAAGATCCATTGCTCTAAAAGCCTGCGCATTAAATTTTCTAAGTTGATCATTACACCCTGATTTATATTTCTCATTAAAAATTATTCCAAACTAACCCCTCCCAATTCTCGGTGTACTGCCCCAAAAGTGGTTCAATCAGTTGCCCACATTCTGWTTTGTTGTCAACTTGATAGTCCATTTTGTTTGTAGTTGTCATGAATTGCTGAAAAAACGGTATTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCAAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTAATTGCGTCCCATTCACTGAAAATAGTGATGCTTCATCAATTTTTCTTGCTAATCAACTAACTCTGGAGATGCTCTCGCATGATATGCGCCCCATAGAATCATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>502 330 109 59</canonical_bands>
                <polymorphic_bands>832 109 59</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGCATTAAATTTTCTAAGTTG</pcr_primer_p1>
		<pcr_primer_p2>AATGCATACTCTTGCTACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCGCATTAAATTTTCTAAGTTGATCATTACACCCTGATTTATATTTCTCATTAAAAATTATTCCAAACTAACCCCTCCCAATTCTCGGTGTACTGCCCCAAAAGTGGTTCAATCAGTTGCCCACATTCTGATTTGTTGTCAACTTGATAGTCCATTTTGTTTGTAGTTGTCATGAATTGCTGAAAAAACGGTATTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCAAGAGTATGCATT</canonical_amplicon>
		<polymorphic_amplicon>GCGCATTAAATTTTCTAAGTTGATCATTACACCCTGATTTATATTTCTCATTAAAAATTATTCCAAACTAACCCCTCCCAATTCTCGGTGTACTGCCCCAAAAGTGGTTCAATCAGTTGCCCACATTCTGWTTTGTTGTCAACTTGATAGTCCATTTTGTTTGTAGTTGTCATGAATTGCTGAAAAAACGGTATTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCAAGAGTATGCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32260</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>254462</contig_pos>
        <strand></strand>
        <context>ACAGCTGTCG[A/T]CCTCGCCTTK</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCG</left_flank>
        <right_flank>CCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAACCTAGGTGCGGAGCCTAGTCGTGTTTAGGCTTATTTTGAAGCTAACAGCAAGGCAAAGTCGTTGATCTCTGTTGAAAATGATTTGAATCAAAACTAACCGAGTTGTGGTAGTTTTGAGAAGAAACGAATAACTTTAAATTTCGATTACGTGCCTATTTACTCCAAAATGTTAAGATCCATTGCTCTAAAAGCCTGCGCATTAAATTTTCTAAGTTGATCATTACACCCTGATTTATATTTCTCATTAAAAATTATTCCAAACTAACCCCTCCCAATTCTCGGTGTACTGCCCCAAAAGTGGTTCAATCAGTTGCCCACATTCTGATTTGTTGTCAACTTGATAGTCCATTTTGTTTGTAGTTGTCATGAATTGCTGAAAAAACGGTATTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCAAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTAATTGCGTCCCATTCACTGAAAATAGTGATGCTTCATCAATTTTTCTTGCTAATCAACTAACTCTGGAGATGCTCTCGCATGATATGCGCCCCATAGAATCATAGTGTTCGTTGACAACTTCACATTCATAAATCCATTTCCTATGATCAATCCCTTGAATTTTTCGTTTGGGAATTCTCTCTTCGCAATGGATTCTGCCACCAATGCAGACAACATTGGTCCATAGACTCCTCCATAGGATTCGGCGGCTATGAAGAACTCATTTTTCAGAT</canonical>
            <polymorphic>AAAAAACCTAGGTGCGGAGCCTAGTCGTGTTTAGGCTTATTTTGAAGCTAACAGCAAGGCAAAGTCGTTGATCTCTGTTGAAAATGATTTGAATCAAAACTAACCGAGTTGTGGTAGTTTTGAGAAGAAACGAATAACTTTAAATTTCGATTACGTGCCTATTTACTCCAAAATGTTAAGATCCATTGCTCTAAAAGCCTGCGCATTAAATTTTCTAAGTTGATCATTACACCCTGATTTATATTTCTCATTAAAAATTATTCCAAACTAACCCCTCCCAATTCTCGGTGTACTGCCCCAAAAGTGGTTCAATCAGTTGCCCACATTCTGATTTGTTGTCAACTTGATAGTCCATTTTGTTTGTAGTTGTCATGAATTGCTGAAAAAACGGTATTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCAAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGWCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTAATTGCGTCCCATTCACTGAAAATAGTGATGCTTCATCAATTTTTCTTGCTAATCAACTAACTCTGGAGATGCTCTCGCATGATATGCGCCCCATAGAATCATAGTGTTCGTTGACAACTTCACATTCATAAATCCATTTCCTATGATCAATCCCTTGAATTTTTCGTTTGGGAATTCTCTCTTCGCAATGGATTCTGCCACCAATGCAGACAACATTGGTCCATAGACTCCTCCATAGGATTCGGCGGCTATGAAGAACTCATTTTTCAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>497 310 193</canonical_bands>
                <polymorphic_bands>690 310</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>350 309 148 109 59 25</canonical_bands>
                <polymorphic_bands>459 309 148 59 25</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>340 193 160 158 149</canonical_bands>
                <polymorphic_bands>351 340 160 149</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>290 193 160 149 124 50 34</canonical_bands>
                <polymorphic_bands>290 227 160 149 124 50</polymorphic_bands>
            </assay>
            <assay>
                <site>GTCGAC</site>
                <isoschizomers>
                    <enzyme>SalI</enzyme>
                </isoschizomers>
                <canonical_bands>496 311 193</canonical_bands>
                <polymorphic_bands>689 311</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGTATGCATTCTACCGTCAC</pcr_primer_p1>
		<pcr_primer_p2>GTCGACAGTTATGATTTTATGGT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGAC</canonical_amplicon>
		<polymorphic_amplicon>AGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGWCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32261</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>254472</contig_pos>
        <strand></strand>
        <context>WCCTCGCCTT[T/G]ATGTATGCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTT</left_flank>
        <right_flank>ATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGG</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGCGGAGCCTAGTCGTGTTTAGGCTTATTTTGAAGCTAACAGCAAGGCAAAGTCGTTGATCTCTGTTGAAAATGATTTGAATCAAAACTAACCGAGTTGTGGTAGTTTTGAGAAGAAACGAATAACTTTAAATTTCGATTACGTGCCTATTTACTCCAAAATGTTAAGATCCATTGCTCTAAAAGCCTGCGCATTAAATTTTCTAAGTTGATCATTACACCCTGATTTATATTTCTCATTAAAAATTATTCCAAACTAACCCCTCCCAATTCTCGGTGTACTGCCCCAAAAGTGGTTCAATCAGTTGCCCACATTCTGATTTGTTGTCAACTTGATAGTCCATTTTGTTTGTAGTTGTCATGAATTGCTGAAAAAACGGTATTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCAAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTAATTGCGTCCCATTCACTGAAAATAGTGATGCTTCATCAATTTTTCTTGCTAATCAACTAACTCTGGAGATGCTCTCGCATGATATGCGCCCCATAGAATCATAGTGTTCGTTGACAACTTCACATTCATAAATCCATTTCCTATGATCAATCCCTTGAATTTTTCGTTTGGGAATTCTCTCTTCGCAATGGATTCTGCCACCAATGCAGACAACATTGGTCCATAGACTCCTCCATAGGATTCGGCGGCTATGAAGAACTCATTTTTCAGATATGACTGGTT</canonical>
            <polymorphic>GGTGCGGAGCCTAGTCGTGTTTAGGCTTATTTTGAAGCTAACAGCAAGGCAAAGTCGTTGATCTCTGTTGAAAATGATTTGAATCAAAACTAACCGAGTTGTGGTAGTTTTGAGAAGAAACGAATAACTTTAAATTTCGATTACGTGCCTATTTACTCCAAAATGTTAAGATCCATTGCTCTAAAAGCCTGCGCATTAAATTTTCTAAGTTGATCATTACACCCTGATTTATATTTCTCATTAAAAATTATTCCAAACTAACCCCTCCCAATTCTCGGTGTACTGCCCCAAAAGTGGTTCAATCAGTTGCCCACATTCTGATTTGTTGTCAACTTGATAGTCCATTTTGTTTGTAGTTGTCATGAATTGCTGAAAAAACGGTATTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCAAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTKATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTAATTGCGTCCCATTCACTGAAAATAGTGATGCTTCATCAATTTTTCTTGCTAATCAACTAACTCTGGAGATGCTCTCGCATGATATGCGCCCCATAGAATCATAGTGTTCGTTGACAACTTCACATTCATAAATCCATTTCCTATGATCAATCCCTTGAATTTTTCGTTTGGGAATTCTCTCTTCGCAATGGATTCTGCCACCAATGCAGACAACATTGGTCCATAGACTCCTCCATAGGATTCGGCGGCTATGAAGAACTCATTTTTCAGATATGACTGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGTATGCATTCTACCGTCAC</pcr_primer_p1>
		<pcr_primer_p2>GTCGACAGTTATGATTTTATGGT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGAC</canonical_amplicon>
		<polymorphic_amplicon>AGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTKATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32262</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>254566</contig_pos>
        <strand></strand>
        <context>aagttcaact[T/C]ctcgaggggc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACT</left_flank>
        <right_flank>CTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAGTTGTGGTAGTTTTGAGAAGAAACGAATAACTTTAAATTTCGATTACGTGCCTATTTACTCCAAAATGTTAAGATCCATTGCTCTAAAAGCCTGCGCATTAAATTTTCTAAGTTGATCATTACACCCTGATTTATATTTCTCATTAAAAATTATTCCAAACTAACCCCTCCCAATTCTCGGTGTACTGCCCCAAAAGTGGTTCAATCAGTTGCCCACATTCTGATTTGTTGTCAACTTGATAGTCCATTTTGTTTGTAGTTGTCATGAATTGCTGAAAAAACGGTATTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCAAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTAATTGCGTCCCATTCACTGAAAATAGTGATGCTTCATCAATTTTTCTTGCTAATCAACTAACTCTGGAGATGCTCTCGCATGATATGCGCCCCATAGAATCATAGTGTTCGTTGACAACTTCACATTCATAAATCCATTTCCTATGATCAATCCCTTGAATTTTTCGTTTGGGAATTCTCTCTTCGCAATGGATTCTGCCACCAATGCAGACAACATTGGTCCATAGACTCCTCCATAGGATTCGGCGGCTATGAAGAACTCATTTTTCAGATATGACTGGTTCTTGCTAAAATAAACATTTAGAAATCGAGGATTTTAGGGTATCTTACTTCTCAAAGAAATCCAAAACCGCTCTAAAATTCTGCTCTGCTATCAT</canonical>
            <polymorphic>CGAGTTGTGGTAGTTTTGAGAAGAAACGAATAACTTTAAATTTCGATTACGTGCCTATTTACTCCAAAATGTTAAGATCCATTGCTCTAAAAGCCTGCGCATTAAATTTTCTAAGTTGATCATTACACCCTGATTTATATTTCTCATTAAAAATTATTCCAAACTAACCCCTCCCAATTCTCGGTGTACTGCCCCAAAAGTGGTTCAATCAGTTGCCCACATTCTGATTTGTTGTCAACTTGATAGTCCATTTTGTTTGTAGTTGTCATGAATTGCTGAAAAAACGGTATTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCAAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTYCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTAATTGCGTCCCATTCACTGAAAATAGTGATGCTTCATCAATTTTTCTTGCTAATCAACTAACTCTGGAGATGCTCTCGCATGATATGCGCCCCATAGAATCATAGTGTTCGTTGACAACTTCACATTCATAAATCCATTTCCTATGATCAATCCCTTGAATTTTTCGTTTGGGAATTCTCTCTTCGCAATGGATTCTGCCACCAATGCAGACAACATTGGTCCATAGACTCCTCCATAGGATTCGGCGGCTATGAAGAACTCATTTTTCAGATATGACTGGTTCTTGCTAAAATAAACATTTAGAAATCGAGGATTTTAGGGTATCTTACTTCTCAAAGAAATCCAAAACCGCTCTAAAATTCTGCTCTGCTATCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>313 267 234 86 73 27</canonical_bands>
                <polymorphic_bands>313 267 261 86 73</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGTACAACGCTTAATGTCACT</pcr_primer_p1>
		<pcr_primer_p2>AAGATGTCGACAGTTATGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>GTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTT</canonical_amplicon>
		<polymorphic_amplicon>GTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTYCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32263</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>254603</contig_pos>
        <strand></strand>
        <context>TCGAGAACAT[T/C]ATTTTTTTCR</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACAT</left_flank>
        <right_flank>ATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTCGATTACGTGCCTATTTACTCCAAAATGTTAAGATCCATTGCTCTAAAAGCCTGCGCATTAAATTTTCTAAGTTGATCATTACACCCTGATTTATATTTCTCATTAAAAATTATTCCAAACTAACCCCTCCCAATTCTCGGTGTACTGCCCCAAAAGTGGTTCAATCAGTTGCCCACATTCTGATTTGTTGTCAACTTGATAGTCCATTTTGTTTGTAGTTGTCATGAATTGCTGAAAAAACGGTATTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCAAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTAATTGCGTCCCATTCACTGAAAATAGTGATGCTTCATCAATTTTTCTTGCTAATCAACTAACTCTGGAGATGCTCTCGCATGATATGCGCCCCATAGAATCATAGTGTTCGTTGACAACTTCACATTCATAAATCCATTTCCTATGATCAATCCCTTGAATTTTTCGTTTGGGAATTCTCTCTTCGCAATGGATTCTGCCACCAATGCAGACAACATTGGTCCATAGACTCCTCCATAGGATTCGGCGGCTATGAAGAACTCATTTTTCAGATATGACTGGTTCTTGCTAAAATAAACATTTAGAAATCGAGGATTTTAGGGTATCTTACTTCTCAAAGAAATCCAAAACCGCTCTAAAATTCTGCTCTGCTATCATATCGTCATCTCCTCTCGACACATTTCTATCCTCCTGG</canonical>
            <polymorphic>AAATTTCGATTACGTGCCTATTTACTCCAAAATGTTAAGATCCATTGCTCTAAAAGCCTGCGCATTAAATTTTCTAAGTTGATCATTACACCCTGATTTATATTTCTCATTAAAAATTATTCCAAACTAACCCCTCCCAATTCTCGGTGTACTGCCCCAAAAGTGGTTCAATCAGTTGCCCACATTCTGATTTGTTGTCAACTTGATAGTCCATTTTGTTTGTAGTTGTCATGAATTGCTGAAAAAACGGTATTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCAAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATYATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTAATTGCGTCCCATTCACTGAAAATAGTGATGCTTCATCAATTTTTCTTGCTAATCAACTAACTCTGGAGATGCTCTCGCATGATATGCGCCCCATAGAATCATAGTGTTCGTTGACAACTTCACATTCATAAATCCATTTCCTATGATCAATCCCTTGAATTTTTCGTTTGGGAATTCTCTCTTCGCAATGGATTCTGCCACCAATGCAGACAACATTGGTCCATAGACTCCTCCATAGGATTCGGCGGCTATGAAGAACTCATTTTTCAGATATGACTGGTTCTTGCTAAAATAAACATTTAGAAATCGAGGATTTTAGGGTATCTTACTTCTCAAAGAAATCCAAAACCGCTCTAAAATTCTGCTCTGCTATCATATCGTCATCTCCTCTCGACACATTTCTATCCTCCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTACAACGCTTAATGTCACT</pcr_primer_p1>
		<pcr_primer_p2>AAGATGTCGACAGTTATGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>GTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTT</canonical_amplicon>
		<polymorphic_amplicon>GTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATYATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32264</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>254613</contig_pos>
        <strand></strand>
        <context>YATTTTTTTC[G/A]YSTCCCCCYC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTC</left_flank>
        <right_flank>CCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACGTGCCTATTTACTCCAAAATGTTAAGATCCATTGCTCTAAAAGCCTGCGCATTAAATTTTCTAAGTTGATCATTACACCCTGATTTATATTTCTCATTAAAAATTATTCCAAACTAACCCCTCCCAATTCTCGGTGTACTGCCCCAAAAGTGGTTCAATCAGTTGCCCACATTCTGATTTGTTGTCAACTTGATAGTCCATTTTGTTTGTAGTTGTCATGAATTGCTGAAAAAACGGTATTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCAAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTAATTGCGTCCCATTCACTGAAAATAGTGATGCTTCATCAATTTTTCTTGCTAATCAACTAACTCTGGAGATGCTCTCGCATGATATGCGCCCCATAGAATCATAGTGTTCGTTGACAACTTCACATTCATAAATCCATTTCCTATGATCAATCCCTTGAATTTTTCGTTTGGGAATTCTCTCTTCGCAATGGATTCTGCCACCAATGCAGACAACATTGGTCCATAGACTCCTCCATAGGATTCGGCGGCTATGAAGAACTCATTTTTCAGATATGACTGGTTCTTGCTAAAATAAACATTTAGAAATCGAGGATTTTAGGGTATCTTACTTCTCAAAGAAATCCAAAACCGCTCTAAAATTCTGCTCTGCTATCATATCGTCATCTCCTCTCGACACATTTCTATCCTCCTGGTCATAGGAGA</canonical>
            <polymorphic>TACGTGCCTATTTACTCCAAAATGTTAAGATCCATTGCTCTAAAAGCCTGCGCATTAAATTTTCTAAGTTGATCATTACACCCTGATTTATATTTCTCATTAAAAATTATTCCAAACTAACCCCTCCCAATTCTCGGTGTACTGCCCCAAAAGTGGTTCAATCAGTTGCCCACATTCTGATTTGTTGTCAACTTGATAGTCCATTTTGTTTGTAGTTGTCATGAATTGCTGAAAAAACGGTATTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCAAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCRCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTAATTGCGTCCCATTCACTGAAAATAGTGATGCTTCATCAATTTTTCTTGCTAATCAACTAACTCTGGAGATGCTCTCGCATGATATGCGCCCCATAGAATCATAGTGTTCGTTGACAACTTCACATTCATAAATCCATTTCCTATGATCAATCCCTTGAATTTTTCGTTTGGGAATTCTCTCTTCGCAATGGATTCTGCCACCAATGCAGACAACATTGGTCCATAGACTCCTCCATAGGATTCGGCGGCTATGAAGAACTCATTTTTCAGATATGACTGGTTCTTGCTAAAATAAACATTTAGAAATCGAGGATTTTAGGGTATCTTACTTCTCAAAGAAATCCAAAACCGCTCTAAAATTCTGCTCTGCTATCATATCGTCATCTCCTCTCGACACATTTCTATCCTCCTGGTCATAGGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACAACGCTTAATGTCACTCTG</pcr_primer_p1>
		<pcr_primer_p2>TAAAGAAAAATGCAGGACTTCT</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>TACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTA</canonical_amplicon>
		<polymorphic_amplicon>TACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCRCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32265</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>254614</contig_pos>
        <strand></strand>
        <context>ATTTTTTTCR[C/T]STCCCCCYCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCG</left_flank>
        <right_flank>CTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGTGCCTATTTACTCCAAAATGTTAAGATCCATTGCTCTAAAAGCCTGCGCATTAAATTTTCTAAGTTGATCATTACACCCTGATTTATATTTCTCATTAAAAATTATTCCAAACTAACCCCTCCCAATTCTCGGTGTACTGCCCCAAAAGTGGTTCAATCAGTTGCCCACATTCTGATTTGTTGTCAACTTGATAGTCCATTTTGTTTGTAGTTGTCATGAATTGCTGAAAAAACGGTATTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCAAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTAATTGCGTCCCATTCACTGAAAATAGTGATGCTTCATCAATTTTTCTTGCTAATCAACTAACTCTGGAGATGCTCTCGCATGATATGCGCCCCATAGAATCATAGTGTTCGTTGACAACTTCACATTCATAAATCCATTTCCTATGATCAATCCCTTGAATTTTTCGTTTGGGAATTCTCTCTTCGCAATGGATTCTGCCACCAATGCAGACAACATTGGTCCATAGACTCCTCCATAGGATTCGGCGGCTATGAAGAACTCATTTTTCAGATATGACTGGTTCTTGCTAAAATAAACATTTAGAAATCGAGGATTTTAGGGTATCTTACTTCTCAAAGAAATCCAAAACCGCTCTAAAATTCTGCTCTGCTATCATATCGTCATCTCCTCTCGACACATTTCTATCCTCCTGGTCATAGGAGAA</canonical>
            <polymorphic>ACGTGCCTATTTACTCCAAAATGTTAAGATCCATTGCTCTAAAAGCCTGCGCATTAAATTTTCTAAGTTGATCATTACACCCTGATTTATATTTCTCATTAAAAATTATTCCAAACTAACCCCTCCCAATTCTCGGTGTACTGCCCCAAAAGTGGTTCAATCAGTTGCCCACATTCTGATTTGTTGTCAACTTGATAGTCCATTTTGTTTGTAGTTGTCATGAATTGCTGAAAAAACGGTATTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCAAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGYCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTAATTGCGTCCCATTCACTGAAAATAGTGATGCTTCATCAATTTTTCTTGCTAATCAACTAACTCTGGAGATGCTCTCGCATGATATGCGCCCCATAGAATCATAGTGTTCGTTGACAACTTCACATTCATAAATCCATTTCCTATGATCAATCCCTTGAATTTTTCGTTTGGGAATTCTCTCTTCGCAATGGATTCTGCCACCAATGCAGACAACATTGGTCCATAGACTCCTCCATAGGATTCGGCGGCTATGAAGAACTCATTTTTCAGATATGACTGGTTCTTGCTAAAATAAACATTTAGAAATCGAGGATTTTAGGGTATCTTACTTCTCAAAGAAATCCAAAACCGCTCTAAAATTCTGCTCTGCTATCATATCGTCATCTCCTCTCGACACATTTCTATCCTCCTGGTCATAGGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACAACGCTTAATGTCACTCTG</pcr_primer_p1>
		<pcr_primer_p2>TAAAGAAAAATGCAGGACTTCT</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>TACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTA</canonical_amplicon>
		<polymorphic_amplicon>TACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGYCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32266</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>254615</contig_pos>
        <strand></strand>
        <context>TTTTTTTCRY[C/G]TCCCCCYCCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGC</left_flank>
        <right_flank>TCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTGCCTATTTACTCCAAAATGTTAAGATCCATTGCTCTAAAAGCCTGCGCATTAAATTTTCTAAGTTGATCATTACACCCTGATTTATATTTCTCATTAAAAATTATTCCAAACTAACCCCTCCCAATTCTCGGTGTACTGCCCCAAAAGTGGTTCAATCAGTTGCCCACATTCTGATTTGTTGTCAACTTGATAGTCCATTTTGTTTGTAGTTGTCATGAATTGCTGAAAAAACGGTATTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCAAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTAATTGCGTCCCATTCACTGAAAATAGTGATGCTTCATCAATTTTTCTTGCTAATCAACTAACTCTGGAGATGCTCTCGCATGATATGCGCCCCATAGAATCATAGTGTTCGTTGACAACTTCACATTCATAAATCCATTTCCTATGATCAATCCCTTGAATTTTTCGTTTGGGAATTCTCTCTTCGCAATGGATTCTGCCACCAATGCAGACAACATTGGTCCATAGACTCCTCCATAGGATTCGGCGGCTATGAAGAACTCATTTTTCAGATATGACTGGTTCTTGCTAAAATAAACATTTAGAAATCGAGGATTTTAGGGTATCTTACTTCTCAAAGAAATCCAAAACCGCTCTAAAATTCTGCTCTGCTATCATATCGTCATCTCCTCTCGACACATTTCTATCCTCCTGGTCATAGGAGAAT</canonical>
            <polymorphic>CGTGCCTATTTACTCCAAAATGTTAAGATCCATTGCTCTAAAAGCCTGCGCATTAAATTTTCTAAGTTGATCATTACACCCTGATTTATATTTCTCATTAAAAATTATTCCAAACTAACCCCTCCCAATTCTCGGTGTACTGCCCCAAAAGTGGTTCAATCAGTTGCCCACATTCTGATTTGTTGTCAACTTGATAGTCCATTTTGTTTGTAGTTGTCATGAATTGCTGAAAAAACGGTATTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCAAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCSTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTAATTGCGTCCCATTCACTGAAAATAGTGATGCTTCATCAATTTTTCTTGCTAATCAACTAACTCTGGAGATGCTCTCGCATGATATGCGCCCCATAGAATCATAGTGTTCGTTGACAACTTCACATTCATAAATCCATTTCCTATGATCAATCCCTTGAATTTTTCGTTTGGGAATTCTCTCTTCGCAATGGATTCTGCCACCAATGCAGACAACATTGGTCCATAGACTCCTCCATAGGATTCGGCGGCTATGAAGAACTCATTTTTCAGATATGACTGGTTCTTGCTAAAATAAACATTTAGAAATCGAGGATTTTAGGGTATCTTACTTCTCAAAGAAATCCAAAACCGCTCTAAAATTCTGCTCTGCTATCATATCGTCATCTCCTCTCGACACATTTCTATCCTCCTGGTCATAGGAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACAACGCTTAATGTCACTCTG</pcr_primer_p1>
		<pcr_primer_p2>TAAAGAAAAATGCAGGACTTCT</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>TACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTA</canonical_amplicon>
		<polymorphic_amplicon>TACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCSTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32267</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>254622</contig_pos>
        <strand></strand>
        <context>CRYSTCCCCC[T/C]CCCTCTTAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCC</left_flank>
        <right_flank>CCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTACTCCAAAATGTTAAGATCCATTGCTCTAAAAGCCTGCGCATTAAATTTTCTAAGTTGATCATTACACCCTGATTTATATTTCTCATTAAAAATTATTCCAAACTAACCCCTCCCAATTCTCGGTGTACTGCCCCAAAAGTGGTTCAATCAGTTGCCCACATTCTGATTTGTTGTCAACTTGATAGTCCATTTTGTTTGTAGTTGTCATGAATTGCTGAAAAAACGGTATTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCAAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTAATTGCGTCCCATTCACTGAAAATAGTGATGCTTCATCAATTTTTCTTGCTAATCAACTAACTCTGGAGATGCTCTCGCATGATATGCGCCCCATAGAATCATAGTGTTCGTTGACAACTTCACATTCATAAATCCATTTCCTATGATCAATCCCTTGAATTTTTCGTTTGGGAATTCTCTCTTCGCAATGGATTCTGCCACCAATGCAGACAACATTGGTCCATAGACTCCTCCATAGGATTCGGCGGCTATGAAGAACTCATTTTTCAGATATGACTGGTTCTTGCTAAAATAAACATTTAGAAATCGAGGATTTTAGGGTATCTTACTTCTCAAAGAAATCCAAAACCGCTCTAAAATTCTGCTCTGCTATCATATCGTCATCTCCTCTCGACACATTTCTATCCTCCTGGTCATAGGAGAATCCGACGC</canonical>
            <polymorphic>ATTTACTCCAAAATGTTAAGATCCATTGCTCTAAAAGCCTGCGCATTAAATTTTCTAAGTTGATCATTACACCCTGATTTATATTTCTCATTAAAAATTATTCCAAACTAACCCCTCCCAATTCTCGGTGTACTGCCCCAAAAGTGGTTCAATCAGTTGCCCACATTCTGATTTGTTGTCAACTTGATAGTCCATTTTGTTTGTAGTTGTCATGAATTGCTGAAAAAACGGTATTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCAAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCCYCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTAATTGCGTCCCATTCACTGAAAATAGTGATGCTTCATCAATTTTTCTTGCTAATCAACTAACTCTGGAGATGCTCTCGCATGATATGCGCCCCATAGAATCATAGTGTTCGTTGACAACTTCACATTCATAAATCCATTTCCTATGATCAATCCCTTGAATTTTTCGTTTGGGAATTCTCTCTTCGCAATGGATTCTGCCACCAATGCAGACAACATTGGTCCATAGACTCCTCCATAGGATTCGGCGGCTATGAAGAACTCATTTTTCAGATATGACTGGTTCTTGCTAAAATAAACATTTAGAAATCGAGGATTTTAGGGTATCTTACTTCTCAAAGAAATCCAAAACCGCTCTAAAATTCTGCTCTGCTATCATATCGTCATCTCCTCTCGACACATTTCTATCCTCCTGGTCATAGGAGAATCCGACGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACAACGCTTAATGTCACTCTG</pcr_primer_p1>
		<pcr_primer_p2>TAAAGAAAAATGCAGGACTTCT</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>TACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTA</canonical_amplicon>
		<polymorphic_amplicon>TACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCCYCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32268</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>254668</contig_pos>
        <strand></strand>
        <context>TCTTTAGCTC[C/T]AGAAGTCCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTC</left_flank>
        <right_flank>AGAAGTCCTGCATTTTTCTTTAATTGCGTCCCATTCACTGAAAATAGTGA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATTTTCTAAGTTGATCATTACACCCTGATTTATATTTCTCATTAAAAATTATTCCAAACTAACCCCTCCCAATTCTCGGTGTACTGCCCCAAAAGTGGTTCAATCAGTTGCCCACATTCTGATTTGTTGTCAACTTGATAGTCCATTTTGTTTGTAGTTGTCATGAATTGCTGAAAAAACGGTATTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCAAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTAATTGCGTCCCATTCACTGAAAATAGTGATGCTTCATCAATTTTTCTTGCTAATCAACTAACTCTGGAGATGCTCTCGCATGATATGCGCCCCATAGAATCATAGTGTTCGTTGACAACTTCACATTCATAAATCCATTTCCTATGATCAATCCCTTGAATTTTTCGTTTGGGAATTCTCTCTTCGCAATGGATTCTGCCACCAATGCAGACAACATTGGTCCATAGACTCCTCCATAGGATTCGGCGGCTATGAAGAACTCATTTTTCAGATATGACTGGTTCTTGCTAAAATAAACATTTAGAAATCGAGGATTTTAGGGTATCTTACTTCTCAAAGAAATCCAAAACCGCTCTAAAATTCTGCTCTGCTATCATATCGTCATCTCCTCTCGACACATTTCTATCCTCCTGGTCATAGGAGAATCCGACGCCTATTGGGGATTCCAAAAATAGAATATTTGCTCTCTGAAAATTTAC</canonical>
            <polymorphic>TAAATTTTCTAAGTTGATCATTACACCCTGATTTATATTTCTCATTAAAAATTATTCCAAACTAACCCCTCCCAATTCTCGGTGTACTGCCCCAAAAGTGGTTCAATCAGTTGCCCACATTCTGATTTGTTGTCAACTTGATAGTCCATTTTGTTTGTAGTTGTCATGAATTGCTGAAAAAACGGTATTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCAAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCYAGAAGTCCTGCATTTTTCTTTAATTGCGTCCCATTCACTGAAAATAGTGATGCTTCATCAATTTTTCTTGCTAATCAACTAACTCTGGAGATGCTCTCGCATGATATGCGCCCCATAGAATCATAGTGTTCGTTGACAACTTCACATTCATAAATCCATTTCCTATGATCAATCCCTTGAATTTTTCGTTTGGGAATTCTCTCTTCGCAATGGATTCTGCCACCAATGCAGACAACATTGGTCCATAGACTCCTCCATAGGATTCGGCGGCTATGAAGAACTCATTTTTCAGATATGACTGGTTCTTGCTAAAATAAACATTTAGAAATCGAGGATTTTAGGGTATCTTACTTCTCAAAGAAATCCAAAACCGCTCTAAAATTCTGCTCTGCTATCATATCGTCATCTCCTCTCGACACATTTCTATCCTCCTGGTCATAGGAGAATCCGACGCCTATTGGGGATTCCAAAAATAGAATATTTGCTCTCTGAAAATTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACAACGCTTAATGTCACTCTG</pcr_primer_p1>
		<pcr_primer_p2>GATGAAGCATCACTATTTTCAGT</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>TACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTAATTGCGTCCCATTCACTGAAAATAGTGATGCTTCATC</canonical_amplicon>
		<polymorphic_amplicon>TACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCYAGAAGTCCTGCATTTTTCTTTAATTGCGTCCCATTCACTGAAAATAGTGATGCTTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32269</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>254702</contig_pos>
        <strand></strand>
        <context>TTGCGTCCCA[T/C]TCACTGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTAATTGCGTCCCA</left_flank>
        <right_flank>TCACTGAAAATAGTGATGCTTCATCAATTTTTCTTGCTAATCAACTAACT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATTTCTCATTAAAAATTATTCCAAACTAACCCCTCCCAATTCTCGGTGTACTGCCCCAAAAGTGGTTCAATCAGTTGCCCACATTCTGATTTGTTGTCAACTTGATAGTCCATTTTGTTTGTAGTTGTCATGAATTGCTGAAAAAACGGTATTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCAAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTAATTGCGTCCCATTCACTGAAAATAGTGATGCTTCATCAATTTTTCTTGCTAATCAACTAACTCTGGAGATGCTCTCGCATGATATGCGCCCCATAGAATCATAGTGTTCGTTGACAACTTCACATTCATAAATCCATTTCCTATGATCAATCCCTTGAATTTTTCGTTTGGGAATTCTCTCTTCGCAATGGATTCTGCCACCAATGCAGACAACATTGGTCCATAGACTCCTCCATAGGATTCGGCGGCTATGAAGAACTCATTTTTCAGATATGACTGGTTCTTGCTAAAATAAACATTTAGAAATCGAGGATTTTAGGGTATCTTACTTCTCAAAGAAATCCAAAACCGCTCTAAAATTCTGCTCTGCTATCATATCGTCATCTCCTCTCGACACATTTCTATCCTCCTGGTCATAGGAGAATCCGACGCCTATTGGGGATTCCAAAAATAGAATATTTGCTCTCTGAAAATTTACAAAAGAGGATGATTTCTCAGAATGTGAAGACTCA</canonical>
            <polymorphic>ATATTTCTCATTAAAAATTATTCCAAACTAACCCCTCCCAATTCTCGGTGTACTGCCCCAAAAGTGGTTCAATCAGTTGCCCACATTCTGATTTGTTGTCAACTTGATAGTCCATTTTGTTTGTAGTTGTCATGAATTGCTGAAAAAACGGTATTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCAAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGACCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTTCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCGCCTCCCCCTCCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTAATTGCGTCCCAYTCACTGAAAATAGTGATGCTTCATCAATTTTTCTTGCTAATCAACTAACTCTGGAGATGCTCTCGCATGATATGCGCCCCATAGAATCATAGTGTTCGTTGACAACTTCACATTCATAAATCCATTTCCTATGATCAATCCCTTGAATTTTTCGTTTGGGAATTCTCTCTTCGCAATGGATTCTGCCACCAATGCAGACAACATTGGTCCATAGACTCCTCCATAGGATTCGGCGGCTATGAAGAACTCATTTTTCAGATATGACTGGTTCTTGCTAAAATAAACATTTAGAAATCGAGGATTTTAGGGTATCTTACTTCTCAAAGAAATCCAAAACCGCTCTAAAATTCTGCTCTGCTATCATATCGTCATCTCCTCTCGACACATTTCTATCCTCCTGGTCATAGGAGAATCCGACGCCTATTGGGGATTCCAAAAATAGAATATTTGCTCTCTGAAAATTTACAAAAGAGGATGATTTCTCAGAATGTGAAGACTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCTCTTAATTACCATAAAATCA</pcr_primer_p1>
		<pcr_primer_p2>AGAATTCCCAAACGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTAATTGCGTCCCATTCACTGAAAATAGTGATGCTTCATCAATTTTTCTTGCTAATCAACTAACTCTGGAGATGCTCTCGCATGATATGCGCCCCATAGAATCATAGTGTTCGTTGACAACTTCACATTCATAAATCCATTTCCTATGATCAATCCCTTGAATTTTTCGTTTGGGAATTCT</canonical_amplicon>
		<polymorphic_amplicon>CCCTCTTAATTACCATAAAATCATAACTGTCGACATCTTTAGCTCCAGAAGTCCTGCATTTTTCTTTAATTGCGTCCCAYTCACTGAAAATAGTGATGCTTCATCAATTTTTCTTGCTAATCAACTAACTCTGGAGATGCTCTCGCATGATATGCGCCCCATAGAATCATAGTGTTCGTTGACAACTTCACATTCATAAATCCATTTCCTATGATCAATCCCTTGAATTTTTCGTTTGGGAATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32270</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>312892</contig_pos>
        <strand></strand>
        <context>ctcaaagttg[G/A]cggtttgggT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAACTTTTTGATATCTTTCACAGGAAATGAGACATATGGACTCAAAGTTG</left_flank>
        <right_flank>CGGTTTGGGTAGTACTCAATTAGAATCTTAACGACGTTTGTATTCACTAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCAGCGCCAACATTTTATGCCATTTTTTTGTTTTCAGTTTCAATTTCAGTTTTTGATCTGTCTCTGTAACTTCATACGTATTTGCTCCATTGTTTTTTTTTCGATTTCTAAATCAACATTAGTTTGGTTTCTGTACTTTTCATAAGAATGACCGAAATTTATATCAATTCCATATTATTAAAAGTTTTTTTTCGAGTTTTTTCTTCTCCCAAAATTGCCAGCACCTGTCTAGAGTTTCCGATTTTTATCTTTCCAGAATGTAGAAATAAATGAATCTCATCGTAAGAGTTCTGGAATCTTGGAATCCGTGAATTACGTACTTGTTCTAGTAGGAGCCCACCCAAACTGTCAACTTTGAGCTCATATATCTCATTTTTTGTGAAAGATATCAAAAATTCTGCCAGGGTGAAATATTGGTGATAATATGATGAATATTTTATCAGTTGACAACTTTTTGATATCTTTCACAGGAAATGAGACATATGGACTCAAAGTTGGCGGTTTGGGTAGTACTCAATTAGAATCTTAACGACGTTTGTATTCACTACACATATTGGAATAAAGAAATTATCGAATTTCAGAATTTCAGGATCTTAGAAACCTAAACTTTCAAAATACCTTTGTAATTATCCATCGGAATGTCAAAAAAGTTGCAGTTTTTGACCTGAATCTGTAAATGCATACGTCTTTGCTCTTCTCTATTTCGAGAGCAATATTTTGTTCTTTCCAGACCAATGACCCACAACTTTCAGTCTTCCCCCAATTTTTCCTTTCTTCCCAACCTTCTTTCCAACCAGTCTTTGAAAATACCACCTGTCCACATGATTTTTTCGCTGTTTTCCACCCAATTCATCTTCCTCTTCTTCTTTCCCTTCCCTCTCCTTTTTACTATGTATTTGTTTGTCTTTCCATTTCTCTCGTTCGTTCTTTGATACTCTATCTTAATGCCTTTTGACATTTTTATTGTGTTTTGTTCCACTTTTTTTGGTTTTTTGTTT</canonical>
            <polymorphic>TTTCAGCGCCAACATTTTATGCCATTTTTTTGTTTTCAGTTTCAATTTCAGTTTTTGATCTGTCTCTGTAACTTCATACGTATTTGCTCCATTGTTTTTTTTTCGATTTCTAAATCAACATTAGTTTGGTTTCTGTACTTTTCATAAGAATGACCGAAATTTATATCAATTCCATATTATTAAAAGTTTTTTTTCGAGTTTTTTCTTCTCCCAAAATTGCCAGCACCTGTCTAGAGTTTCCGATTTTTATCTTTCCAGAATGTAGAAATAAATGAATCTCATCGTAAGAGTTCTGGAATCTTGGAATCCGTGAATTACGTACTTGTTCTAGTAGGAGCCCACCCAAACTGTCAACTTTGAGCTCATATATCTCATTTTTTGTGAAAGATATCAAAAATTCTGCCAGGGTGAAATATTGGTGATAATATGATGAATATTTTATCAGTTGACAACTTTTTGATATCTTTCACAGGAAATGAGACATATGGACTCAAAGTTGRCGGTTTGGGTAGTACTCAATTAGAATCTTAACGACGTTTGTATTCACTACACATATTGGAATAAAGAAATTATCGAATTTCAGAATTTCAGGATCTTAGAAACCTAAACTTTCAAAATACCTTTGTAATTATCCATCGGAATGTCAAAAAAGTTGCAGTTTTTGACCTGAATCTGTAAATGCATACGTCTTTGCTCTTCTCTATTTCGAGAGCAATATTTTGTTCTTTCCAGACCAATGACCCACAACTTTCAGTCTTCCCCCAATTTTTCCTTTCTTCCCAACCTTCTTTCCAACCAGTCTTTGAAAATACCACCTGTCCACATGATTTTTTCGCTGTTTTCCACCCAATTCATCTTCCTCTTCTTCTTTCCCTTCCCTCTCCTTTTTACTATGTATTTGTTTGTCTTTCCATTTCTCTCGTTCGTTCTTTGATACTCTATCTTAATGCCTTTTGACATTTTTATTGTGTTTTGTTCCACTTTTTTTGGTTTTTTGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCTTGGAATCCGTGAATTA</pcr_primer_p1>
		<pcr_primer_p2>AATATGTGTAGTGAATACAAACGTC</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>AATCTTGGAATCCGTGAATTACGTACTTGTTCTAGTAGGAGCCCACCCAAACTGTCAACTTTGAGCTCATATATCTCATTTTTTGTGAAAGATATCAAAAATTCTGCCAGGGTGAAATATTGGTGATAATATGATGAATATTTTATCAGTTGACAACTTTTTGATATCTTTCACAGGAAATGAGACATATGGACTCAAAGTTGGCGGTTTGGGTAGTACTCAATTAGAATCTTAACGACGTTTGTATTCACTACACATATT</canonical_amplicon>
		<polymorphic_amplicon>AATCTTGGAATCCGTGAATTACGTACTTGTTCTAGTAGGAGCCCACCCAAACTGTCAACTTTGAGCTCATATATCTCATTTTTTGTGAAAGATATCAAAAATTCTGCCAGGGTGAAATATTGGTGATAATATGATGAATATTTTATCAGTTGACAACTTTTTGATATCTTTCACAGGAAATGAGACATATGGACTCAAAGTTGRCGGTTTGGGTAGTACTCAATTAGAATCTTAACGACGTTTGTATTCACTACACATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32271</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>314144</contig_pos>
        <strand>+</strand>
        <context>TATTTTGCAT[G/T]TASAATTCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATACGGTATGTCTAGAAACTTTTTTCCTAGTTTTAAACATATTTTGCAT</left_flank>
        <right_flank>TACAATTCTATTTTGAAAATAAACCCATAGTAATTCAAAGACTAGAAACA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCGGAGAGAGAGGAAACAACACAACAAATGGTTTATCAGTTCTATTATCTTTTTTCTCCTGCGGTGCACTTTTTGATTGTTTTCTGTATTCTTTTGAAATAGTCAATGATCTTTATTTTTTCTTCATTCTTCTGAAAGTTAGTTTTGGTAAAAAGTCTTGTGACATTTTTCGCAGTTTCAGCGTTTTTCAAAGAATTTGAAACAATTATCAAAGTTTAGAAGTGCTTGTTTATCATATTTCCTCTAATAGAAGCCCAGCCAAACCGGCAACTTTGAGCTCAATTATCTCGATTCCTGCGACAGATATCAAAAATGTGTCAATTGATAAAATATTGGTGATAATATGGTGAACATTTTGCTTTGTTAATAGATTTTTGATATCTTTTATAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTTAAGGGGTGGAGTTCTATTAGAGGAAATACGGTATGTCTAGAAACTTTTTTCCTAGTTTTAAACATATTTTGCATTTACAATTCTATTTTGAAAATAAACCCATAGTAATTCAAAGACTAGAAACACTCTAAAGTCTTACATTCATAGCGAGAAATTTTAGAAAATGTGAATTTCATAAATTTAATTTTATTCAGATTCAGTCTTCAACTTTTAGAAGAATTAAGACCTAAATTTTTGTAATAAATCTACAGTAATCGGAAAACGATTTTAGAAACTCCAGACTTCAAAAATCAAAAATCTCGGAATTCTAAATTCTCAGAATCTTCAAATCAGAGTGCTCTAATTGGCGCCCACACTACGCGTACTTTGAGCTCAACTGTCTCGGTCCCTATGAGAGATATCAGAAACATGTCAACTGATGAAATATTGGTGATATTATGATAAATAATTTATCAGTTAAGAAATTTCTGATACCTCTTATAGGAACCGAGATAATTGCGCTGAAGCGTAATTACCTAATTTCTCTAATAGGAGCCAAGCCTATGCGTGCACTTTAAACTTAATTATCTCGGTTC</canonical>
            <polymorphic>TGGCGGAGAGAGAGGAAACAACACAACAAATGGTTTATCAGTTCTATTATCTTTTTTCTCCTGCGGTGCACTTTTTGATTGTTTTCTGTATTCTTTTGAAATAGTCAATGATCTTTATTTTTTCTTCATTCTTCTGAAAGTTAGTTTTGGTAAAAAGTCTTGTGACATTTTTCGCAGTTTCAGCGTTTTTCAAAGAATTTGAAACAATTATCAAAGTTTAGAAGTGCTTGTTTATCATATTTCCTCTAATAGAAGCCCAGCCAAACCGGCAACTTTGAGCTCAATTATCTCGATTCCTGCGACAGATATCAAAAATGTGTCAATTGATAAAATATTGGTGATAATATGGTGAACATTTTGCTTTGTTAATAGATTTTTGATATCTTTTATAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTTAAGGGGTGGAGTTCTATTAGAGGAAATACGGTATGTCTAGAAACTTTTTTCCTAGTTTTAAACATATTTTGCATKTACAATTCTATTTTGAAAATAAACCCATAGTAATTCAAAGACTAGAAACACTCTAAAGTCTTACATTCATAGCGAGAAATTTTAGAAAATGTGAATTTCATAAATTTAATTTTATTCAGATTCAGTCTTCAACTTTTAGAAGAATTAAGACCTAAATTTTTGTAATAAATCTACAGTAATCGGAAAACGATTTTAGAAACTCCAGACTTCAAAAATCAAAAATCTCGGAATTCTAAATTCTCAGAATCTTCAAATCAGAGTGCTCTAATTGGCGCCCACACTACGCGTACTTTGAGCTCAACTGTCTCGGTCCCTATGAGAGATATCAGAAACATGTCAACTGATGAAATATTGGTGATATTATGATAAATAATTTATCAGTTAAGAAATTTCTGATACCTCTTATAGGAACCGAGATAATTGCGCTGAAGCGTAATTACCTAATTTCTCTAATAGGAGCCAAGCCTATGCGTGCACTTTAAACTTAATTATCTCGGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAGTTTAGAAGTGCTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TCTAAAATTTCTCGCTATGAATG</pcr_primer_p2>
		<pcr_amplicon_size>376</pcr_amplicon_size>
		<canonical_amplicon>TCAAAGTTTAGAAGTGCTTGTTTATCATATTTCCTCTAATAGAAGCCCAGCCAAACCGGCAACTTTGAGCTCAATTATCTCGATTCCTGCGACAGATATCAAAAATGTGTCAATTGATAAAATATTGGTGATAATATGGTGAACATTTTGCTTTGTTAATAGATTTTTGATATCTTTTATAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTTAAGGGGTGGAGTTCTATTAGAGGAAATACGGTATGTCTAGAAACTTTTTTCCTAGTTTTAAACATATTTTGCATTTACAATTCTATTTTGAAAATAAACCCATAGTAATTCAAAGACTAGAAACACTCTAAAGTCTTACATTCATAGCGAGAAATTTTAGA</canonical_amplicon>
		<polymorphic_amplicon>TCAAAGTTTAGAAGTGCTTGTTTATCATATTTCCTCTAATAGAAGCCCAGCCAAACCGGCAACTTTGAGCTCAATTATCTCGATTCCTGCGACAGATATCAAAAATGTGTCAATTGATAAAATATTGGTGATAATATGGTGAACATTTTGCTTTGTTAATAGATTTTTGATATCTTTTATAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTTAAGGGGTGGAGTTCTATTAGAGGAAATACGGTATGTCTAGAAACTTTTTTCCTAGTTTTAAACATATTTTGCATKTACAATTCTATTTTGAAAATAAACCCATAGTAATTCAAAGACTAGAAACACTCTAAAGTCTTACATTCATAGCGAGAAATTTTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32272</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>314147</contig_pos>
        <strand>+</strand>
        <context>TTTGCATKTA[C/G]AATTCTATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACGGTATGTCTAGAAACTTTTTTCCTAGTTTTAAACATATTTTGCATTTA</left_flank>
        <right_flank>AATTCTATTTTGAAAATAAACCCATAGTAATTCAAAGACTAGAAACACTC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGAGAGAGAGGAAACAACACAACAAATGGTTTATCAGTTCTATTATCTTTTTTCTCCTGCGGTGCACTTTTTGATTGTTTTCTGTATTCTTTTGAAATAGTCAATGATCTTTATTTTTTCTTCATTCTTCTGAAAGTTAGTTTTGGTAAAAAGTCTTGTGACATTTTTCGCAGTTTCAGCGTTTTTCAAAGAATTTGAAACAATTATCAAAGTTTAGAAGTGCTTGTTTATCATATTTCCTCTAATAGAAGCCCAGCCAAACCGGCAACTTTGAGCTCAATTATCTCGATTCCTGCGACAGATATCAAAAATGTGTCAATTGATAAAATATTGGTGATAATATGGTGAACATTTTGCTTTGTTAATAGATTTTTGATATCTTTTATAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTTAAGGGGTGGAGTTCTATTAGAGGAAATACGGTATGTCTAGAAACTTTTTTCCTAGTTTTAAACATATTTTGCATTTACAATTCTATTTTGAAAATAAACCCATAGTAATTCAAAGACTAGAAACACTCTAAAGTCTTACATTCATAGCGAGAAATTTTAGAAAATGTGAATTTCATAAATTTAATTTTATTCAGATTCAGTCTTCAACTTTTAGAAGAATTAAGACCTAAATTTTTGTAATAAATCTACAGTAATCGGAAAACGATTTTAGAAACTCCAGACTTCAAAAATCAAAAATCTCGGAATTCTAAATTCTCAGAATCTTCAAATCAGAGTGCTCTAATTGGCGCCCACACTACGCGTACTTTGAGCTCAACTGTCTCGGTCCCTATGAGAGATATCAGAAACATGTCAACTGATGAAATATTGGTGATATTATGATAAATAATTTATCAGTTAAGAAATTTCTGATACCTCTTATAGGAACCGAGATAATTGCGCTGAAGCGTAATTACCTAATTTCTCTAATAGGAGCCAAGCCTATGCGTGCACTTTAAACTTAATTATCTCGGTTCCTT</canonical>
            <polymorphic>CGGAGAGAGAGGAAACAACACAACAAATGGTTTATCAGTTCTATTATCTTTTTTCTCCTGCGGTGCACTTTTTGATTGTTTTCTGTATTCTTTTGAAATAGTCAATGATCTTTATTTTTTCTTCATTCTTCTGAAAGTTAGTTTTGGTAAAAAGTCTTGTGACATTTTTCGCAGTTTCAGCGTTTTTCAAAGAATTTGAAACAATTATCAAAGTTTAGAAGTGCTTGTTTATCATATTTCCTCTAATAGAAGCCCAGCCAAACCGGCAACTTTGAGCTCAATTATCTCGATTCCTGCGACAGATATCAAAAATGTGTCAATTGATAAAATATTGGTGATAATATGGTGAACATTTTGCTTTGTTAATAGATTTTTGATATCTTTTATAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTTAAGGGGTGGAGTTCTATTAGAGGAAATACGGTATGTCTAGAAACTTTTTTCCTAGTTTTAAACATATTTTGCATTTASAATTCTATTTTGAAAATAAACCCATAGTAATTCAAAGACTAGAAACACTCTAAAGTCTTACATTCATAGCGAGAAATTTTAGAAAATGTGAATTTCATAAATTTAATTTTATTCAGATTCAGTCTTCAACTTTTAGAAGAATTAAGACCTAAATTTTTGTAATAAATCTACAGTAATCGGAAAACGATTTTAGAAACTCCAGACTTCAAAAATCAAAAATCTCGGAATTCTAAATTCTCAGAATCTTCAAATCAGAGTGCTCTAATTGGCGCCCACACTACGCGTACTTTGAGCTCAACTGTCTCGGTCCCTATGAGAGATATCAGAAACATGTCAACTGATGAAATATTGGTGATATTATGATAAATAATTTATCAGTTAAGAAATTTCTGATACCTCTTATAGGAACCGAGATAATTGCGCTGAAGCGTAATTACCTAATTTCTCTAATAGGAGCCAAGCCTATGCGTGCACTTTAAACTTAATTATCTCGGTTCCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAGTTTAGAAGTGCTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TCTAAAATTTCTCGCTATGAATG</pcr_primer_p2>
		<pcr_amplicon_size>376</pcr_amplicon_size>
		<canonical_amplicon>TCAAAGTTTAGAAGTGCTTGTTTATCATATTTCCTCTAATAGAAGCCCAGCCAAACCGGCAACTTTGAGCTCAATTATCTCGATTCCTGCGACAGATATCAAAAATGTGTCAATTGATAAAATATTGGTGATAATATGGTGAACATTTTGCTTTGTTAATAGATTTTTGATATCTTTTATAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTTAAGGGGTGGAGTTCTATTAGAGGAAATACGGTATGTCTAGAAACTTTTTTCCTAGTTTTAAACATATTTTGCATTTACAATTCTATTTTGAAAATAAACCCATAGTAATTCAAAGACTAGAAACACTCTAAAGTCTTACATTCATAGCGAGAAATTTTAGA</canonical_amplicon>
		<polymorphic_amplicon>TCAAAGTTTAGAAGTGCTTGTTTATCATATTTCCTCTAATAGAAGCCCAGCCAAACCGGCAACTTTGAGCTCAATTATCTCGATTCCTGCGACAGATATCAAAAATGTGTCAATTGATAAAATATTGGTGATAATATGGTGAACATTTTGCTTTGTTAATAGATTTTTGATATCTTTTATAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTTAAGGGGTGGAGTTCTATTAGAGGAAATACGGTATGTCTAGAAACTTTTTTCCTAGTTTTAAACATATTTTGCATTTASAATTCTATTTTGAAAATAAACCCATAGTAATTCAAAGACTAGAAACACTCTAAAGTCTTACATTCATAGCGAGAAATTTTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32273</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>314173</contig_pos>
        <strand>+</strand>
        <context>ATAAACCCAT[A/G]GTAATYCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTTTAAACATATTTTGCATTTACAATTCTATTTTGAAAATAAACCCAT</left_flank>
        <right_flank>GTAATTCAAAGACTAGAAACACTCTAAAGTCTTACATTCATAGCGAGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGTTTATCAGTTCTATTATCTTTTTTCTCCTGCGGTGCACTTTTTGATTGTTTTCTGTATTCTTTTGAAATAGTCAATGATCTTTATTTTTTCTTCATTCTTCTGAAAGTTAGTTTTGGTAAAAAGTCTTGTGACATTTTTCGCAGTTTCAGCGTTTTTCAAAGAATTTGAAACAATTATCAAAGTTTAGAAGTGCTTGTTTATCATATTTCCTCTAATAGAAGCCCAGCCAAACCGGCAACTTTGAGCTCAATTATCTCGATTCCTGCGACAGATATCAAAAATGTGTCAATTGATAAAATATTGGTGATAATATGGTGAACATTTTGCTTTGTTAATAGATTTTTGATATCTTTTATAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTTAAGGGGTGGAGTTCTATTAGAGGAAATACGGTATGTCTAGAAACTTTTTTCCTAGTTTTAAACATATTTTGCATTTACAATTCTATTTTGAAAATAAACCCATAGTAATTCAAAGACTAGAAACACTCTAAAGTCTTACATTCATAGCGAGAAATTTTAGAAAATGTGAATTTCATAAATTTAATTTTATTCAGATTCAGTCTTCAACTTTTAGAAGAATTAAGACCTAAATTTTTGTAATAAATCTACAGTAATCGGAAAACGATTTTAGAAACTCCAGACTTCAAAAATCAAAAATCTCGGAATTCTAAATTCTCAGAATCTTCAAATCAGAGTGCTCTAATTGGCGCCCACACTACGCGTACTTTGAGCTCAACTGTCTCGGTCCCTATGAGAGATATCAGAAACATGTCAACTGATGAAATATTGGTGATATTATGATAAATAATTTATCAGTTAAGAAATTTCTGATACCTCTTATAGGAACCGAGATAATTGCGCTGAAGCGTAATTACCTAATTTCTCTAATAGGAGCCAAGCCTATGCGTGCACTTTAAACTTAATTATCTCGGTTCCTTTGAGATATATCAAAAATTTATCAACT</canonical>
            <polymorphic>ATGGTTTATCAGTTCTATTATCTTTTTTCTCCTGCGGTGCACTTTTTGATTGTTTTCTGTATTCTTTTGAAATAGTCAATGATCTTTATTTTTTCTTCATTCTTCTGAAAGTTAGTTTTGGTAAAAAGTCTTGTGACATTTTTCGCAGTTTCAGCGTTTTTCAAAGAATTTGAAACAATTATCAAAGTTTAGAAGTGCTTGTTTATCATATTTCCTCTAATAGAAGCCCAGCCAAACCGGCAACTTTGAGCTCAATTATCTCGATTCCTGCGACAGATATCAAAAATGTGTCAATTGATAAAATATTGGTGATAATATGGTGAACATTTTGCTTTGTTAATAGATTTTTGATATCTTTTATAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTTAAGGGGTGGAGTTCTATTAGAGGAAATACGGTATGTCTAGAAACTTTTTTCCTAGTTTTAAACATATTTTGCATTTACAATTCTATTTTGAAAATAAACCCATRGTAATTCAAAGACTAGAAACACTCTAAAGTCTTACATTCATAGCGAGAAATTTTAGAAAATGTGAATTTCATAAATTTAATTTTATTCAGATTCAGTCTTCAACTTTTAGAAGAATTAAGACCTAAATTTTTGTAATAAATCTACAGTAATCGGAAAACGATTTTAGAAACTCCAGACTTCAAAAATCAAAAATCTCGGAATTCTAAATTCTCAGAATCTTCAAATCAGAGTGCTCTAATTGGCGCCCACACTACGCGTACTTTGAGCTCAACTGTCTCGGTCCCTATGAGAGATATCAGAAACATGTCAACTGATGAAATATTGGTGATATTATGATAAATAATTTATCAGTTAAGAAATTTCTGATACCTCTTATAGGAACCGAGATAATTGCGCTGAAGCGTAATTACCTAATTTCTCTAATAGGAGCCAAGCCTATGCGTGCACTTTAAACTTAATTATCTCGGTTCCTTTGAGATATATCAAAAATTTATCAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAGTTTAGAAGTGCTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TCTAAAATTTCTCGCTATGAATG</pcr_primer_p2>
		<pcr_amplicon_size>376</pcr_amplicon_size>
		<canonical_amplicon>TCAAAGTTTAGAAGTGCTTGTTTATCATATTTCCTCTAATAGAAGCCCAGCCAAACCGGCAACTTTGAGCTCAATTATCTCGATTCCTGCGACAGATATCAAAAATGTGTCAATTGATAAAATATTGGTGATAATATGGTGAACATTTTGCTTTGTTAATAGATTTTTGATATCTTTTATAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTTAAGGGGTGGAGTTCTATTAGAGGAAATACGGTATGTCTAGAAACTTTTTTCCTAGTTTTAAACATATTTTGCATTTACAATTCTATTTTGAAAATAAACCCATAGTAATTCAAAGACTAGAAACACTCTAAAGTCTTACATTCATAGCGAGAAATTTTAGA</canonical_amplicon>
		<polymorphic_amplicon>TCAAAGTTTAGAAGTGCTTGTTTATCATATTTCCTCTAATAGAAGCCCAGCCAAACCGGCAACTTTGAGCTCAATTATCTCGATTCCTGCGACAGATATCAAAAATGTGTCAATTGATAAAATATTGGTGATAATATGGTGAACATTTTGCTTTGTTAATAGATTTTTGATATCTTTTATAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTTAAGGGGTGGAGTTCTATTAGAGGAAATACGGTATGTCTAGAAACTTTTTTCCTAGTTTTAAACATATTTTGCATTTACAATTCTATTTTGAAAATAAACCCATRGTAATTCAAAGACTAGAAACACTCTAAAGTCTTACATTCATAGCGAGAAATTTTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32274</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>314179</contig_pos>
        <strand>+</strand>
        <context>CCATRGTAAT[C/T]CAAAGACTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACATATTTTGCATTTACAATTCTATTTTGAAAATAAACCCATAGTAAT</left_flank>
        <right_flank>CAAAGACTAGAAACACTCTAAAGTCTTACATTCATAGCGAGAAATTTTAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCAGTTCTATTATCTTTTTTCTCCTGCGGTGCACTTTTTGATTGTTTTCTGTATTCTTTTGAAATAGTCAATGATCTTTATTTTTTCTTCATTCTTCTGAAAGTTAGTTTTGGTAAAAAGTCTTGTGACATTTTTCGCAGTTTCAGCGTTTTTCAAAGAATTTGAAACAATTATCAAAGTTTAGAAGTGCTTGTTTATCATATTTCCTCTAATAGAAGCCCAGCCAAACCGGCAACTTTGAGCTCAATTATCTCGATTCCTGCGACAGATATCAAAAATGTGTCAATTGATAAAATATTGGTGATAATATGGTGAACATTTTGCTTTGTTAATAGATTTTTGATATCTTTTATAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTTAAGGGGTGGAGTTCTATTAGAGGAAATACGGTATGTCTAGAAACTTTTTTCCTAGTTTTAAACATATTTTGCATTTACAATTCTATTTTGAAAATAAACCCATAGTAATTCAAAGACTAGAAACACTCTAAAGTCTTACATTCATAGCGAGAAATTTTAGAAAATGTGAATTTCATAAATTTAATTTTATTCAGATTCAGTCTTCAACTTTTAGAAGAATTAAGACCTAAATTTTTGTAATAAATCTACAGTAATCGGAAAACGATTTTAGAAACTCCAGACTTCAAAAATCAAAAATCTCGGAATTCTAAATTCTCAGAATCTTCAAATCAGAGTGCTCTAATTGGCGCCCACACTACGCGTACTTTGAGCTCAACTGTCTCGGTCCCTATGAGAGATATCAGAAACATGTCAACTGATGAAATATTGGTGATATTATGATAAATAATTTATCAGTTAAGAAATTTCTGATACCTCTTATAGGAACCGAGATAATTGCGCTGAAGCGTAATTACCTAATTTCTCTAATAGGAGCCAAGCCTATGCGTGCACTTTAAACTTAATTATCTCGGTTCCTTTGAGATATATCAAAAATTTATCAACTGATAAA</canonical>
            <polymorphic>TATCAGTTCTATTATCTTTTTTCTCCTGCGGTGCACTTTTTGATTGTTTTCTGTATTCTTTTGAAATAGTCAATGATCTTTATTTTTTCTTCATTCTTCTGAAAGTTAGTTTTGGTAAAAAGTCTTGTGACATTTTTCGCAGTTTCAGCGTTTTTCAAAGAATTTGAAACAATTATCAAAGTTTAGAAGTGCTTGTTTATCATATTTCCTCTAATAGAAGCCCAGCCAAACCGGCAACTTTGAGCTCAATTATCTCGATTCCTGCGACAGATATCAAAAATGTGTCAATTGATAAAATATTGGTGATAATATGGTGAACATTTTGCTTTGTTAATAGATTTTTGATATCTTTTATAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTTAAGGGGTGGAGTTCTATTAGAGGAAATACGGTATGTCTAGAAACTTTTTTCCTAGTTTTAAACATATTTTGCATTTACAATTCTATTTTGAAAATAAACCCATAGTAATYCAAAGACTAGAAACACTCTAAAGTCTTACATTCATAGCGAGAAATTTTAGAAAATGTGAATTTCATAAATTTAATTTTATTCAGATTCAGTCTTCAACTTTTAGAAGAATTAAGACCTAAATTTTTGTAATAAATCTACAGTAATCGGAAAACGATTTTAGAAACTCCAGACTTCAAAAATCAAAAATCTCGGAATTCTAAATTCTCAGAATCTTCAAATCAGAGTGCTCTAATTGGCGCCCACACTACGCGTACTTTGAGCTCAACTGTCTCGGTCCCTATGAGAGATATCAGAAACATGTCAACTGATGAAATATTGGTGATATTATGATAAATAATTTATCAGTTAAGAAATTTCTGATACCTCTTATAGGAACCGAGATAATTGCGCTGAAGCGTAATTACCTAATTTCTCTAATAGGAGCCAAGCCTATGCGTGCACTTTAAACTTAATTATCTCGGTTCCTTTGAGATATATCAAAAATTTATCAACTGATAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>160 105 100 82 77 74 46 44 39 35 31 31 31 28 18 16 16 16 12 10 9 8 7 5</canonical_bands>
                <polymorphic_bands>160 105 100 82 77 74 74 44 39 35 31 31 31 18 16 16 16 12 10 9 8 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAGAAGTGCTTGTTTATCATATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTAAAATTTCTCGCTATGA</pcr_primer_p2>
		<pcr_amplicon_size>373</pcr_amplicon_size>
		<canonical_amplicon>TTTAGAAGTGCTTGTTTATCATATTTCCTCTAATAGAAGCCCAGCCAAACCGGCAACTTTGAGCTCAATTATCTCGATTCCTGCGACAGATATCAAAAATGTGTCAATTGATAAAATATTGGTGATAATATGGTGAACATTTTGCTTTGTTAATAGATTTTTGATATCTTTTATAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTTAAGGGGTGGAGTTCTATTAGAGGAAATACGGTATGTCTAGAAACTTTTTTCCTAGTTTTAAACATATTTTGCATTTACAATTCTATTTTGAAAATAAACCCATAGTAATTCAAAGACTAGAAACACTCTAAAGTCTTACATTCATAGCGAGAAATTTTAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTAGAAGTGCTTGTTTATCATATTTCCTCTAATAGAAGCCCAGCCAAACCGGCAACTTTGAGCTCAATTATCTCGATTCCTGCGACAGATATCAAAAATGTGTCAATTGATAAAATATTGGTGATAATATGGTGAACATTTTGCTTTGTTAATAGATTTTTGATATCTTTTATAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTTAAGGGGTGGAGTTCTATTAGAGGAAATACGGTATGTCTAGAAACTTTTTTCCTAGTTTTAAACATATTTTGCATTTACAATTCTATTTTGAAAATAAACCCATAGTAATYCAAAGACTAGAAACACTCTAAAGTCTTACATTCATAGCGAGAAATTTTAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32275</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>314206</contig_pos>
        <strand>+</strand>
        <context>TCTAAAGTCT[C/T]ACATTCATAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGAAAATAAACCCATAGTAATTCAAAGACTAGAAACACTCTAAAGTCT</left_flank>
        <right_flank>ACATTCATAGCGAGAAATTTTAGAAAATGTGAATTTCATAAATTTAATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGGTGCACTTTTTGATTGTTTTCTGTATTCTTTTGAAATAGTCAATGATCTTTATTTTTTCTTCATTCTTCTGAAAGTTAGTTTTGGTAAAAAGTCTTGTGACATTTTTCGCAGTTTCAGCGTTTTTCAAAGAATTTGAAACAATTATCAAAGTTTAGAAGTGCTTGTTTATCATATTTCCTCTAATAGAAGCCCAGCCAAACCGGCAACTTTGAGCTCAATTATCTCGATTCCTGCGACAGATATCAAAAATGTGTCAATTGATAAAATATTGGTGATAATATGGTGAACATTTTGCTTTGTTAATAGATTTTTGATATCTTTTATAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTTAAGGGGTGGAGTTCTATTAGAGGAAATACGGTATGTCTAGAAACTTTTTTCCTAGTTTTAAACATATTTTGCATTTACAATTCTATTTTGAAAATAAACCCATAGTAATTCAAAGACTAGAAACACTCTAAAGTCTTACATTCATAGCGAGAAATTTTAGAAAATGTGAATTTCATAAATTTAATTTTATTCAGATTCAGTCTTCAACTTTTAGAAGAATTAAGACCTAAATTTTTGTAATAAATCTACAGTAATCGGAAAACGATTTTAGAAACTCCAGACTTCAAAAATCAAAAATCTCGGAATTCTAAATTCTCAGAATCTTCAAATCAGAGTGCTCTAATTGGCGCCCACACTACGCGTACTTTGAGCTCAACTGTCTCGGTCCCTATGAGAGATATCAGAAACATGTCAACTGATGAAATATTGGTGATATTATGATAAATAATTTATCAGTTAAGAAATTTCTGATACCTCTTATAGGAACCGAGATAATTGCGCTGAAGCGTAATTACCTAATTTCTCTAATAGGAGCCAAGCCTATGCGTGCACTTTAAACTTAATTATCTCGGTTCCTTTGAGATATATCAAAAATTTATCAACTGATAAAATATTGGTGATACTATGATAAACAGTT</canonical>
            <polymorphic>GCGGTGCACTTTTTGATTGTTTTCTGTATTCTTTTGAAATAGTCAATGATCTTTATTTTTTCTTCATTCTTCTGAAAGTTAGTTTTGGTAAAAAGTCTTGTGACATTTTTCGCAGTTTCAGCGTTTTTCAAAGAATTTGAAACAATTATCAAAGTTTAGAAGTGCTTGTTTATCATATTTCCTCTAATAGAAGCCCAGCCAAACCGGCAACTTTGAGCTCAATTATCTCGATTCCTGCGACAGATATCAAAAATGTGTCAATTGATAAAATATTGGTGATAATATGGTGAACATTTTGCTTTGTTAATAGATTTTTGATATCTTTTATAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTTAAGGGGTGGAGTTCTATTAGAGGAAATACGGTATGTCTAGAAACTTTTTTCCTAGTTTTAAACATATTTTGCATTTACAATTCTATTTTGAAAATAAACCCATAGTAATTCAAAGACTAGAAACACTCTAAAGTCTYACATTCATAGCGAGAAATTTTAGAAAATGTGAATTTCATAAATTTAATTTTATTCAGATTCAGTCTTCAACTTTTAGAAGAATTAAGACCTAAATTTTTGTAATAAATCTACAGTAATCGGAAAACGATTTTAGAAACTCCAGACTTCAAAAATCAAAAATCTCGGAATTCTAAATTCTCAGAATCTTCAAATCAGAGTGCTCTAATTGGCGCCCACACTACGCGTACTTTGAGCTCAACTGTCTCGGTCCCTATGAGAGATATCAGAAACATGTCAACTGATGAAATATTGGTGATATTATGATAAATAATTTATCAGTTAAGAAATTTCTGATACCTCTTATAGGAACCGAGATAATTGCGCTGAAGCGTAATTACCTAATTTCTCTAATAGGAGCCAAGCCTATGCGTGCACTTTAAACTTAATTATCTCGGTTCCTTTGAGATATATCAAAAATTTATCAACTGATAAAATATTGGTGATACTATGATAAACAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAGTTTAGAAGTGCTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>GTTGAAGACTGAATCTGAATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>423</pcr_amplicon_size>
		<canonical_amplicon>TCAAAGTTTAGAAGTGCTTGTTTATCATATTTCCTCTAATAGAAGCCCAGCCAAACCGGCAACTTTGAGCTCAATTATCTCGATTCCTGCGACAGATATCAAAAATGTGTCAATTGATAAAATATTGGTGATAATATGGTGAACATTTTGCTTTGTTAATAGATTTTTGATATCTTTTATAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTTAAGGGGTGGAGTTCTATTAGAGGAAATACGGTATGTCTAGAAACTTTTTTCCTAGTTTTAAACATATTTTGCATTTACAATTCTATTTTGAAAATAAACCCATAGTAATTCAAAGACTAGAAACACTCTAAAGTCTTACATTCATAGCGAGAAATTTTAGAAAATGTGAATTTCATAAATTTAATTTTATTCAGATTCAGTCTTCAAC</canonical_amplicon>
		<polymorphic_amplicon>TCAAAGTTTAGAAGTGCTTGTTTATCATATTTCCTCTAATAGAAGCCCAGCCAAACCGGCAACTTTGAGCTCAATTATCTCGATTCCTGCGACAGATATCAAAAATGTGTCAATTGATAAAATATTGGTGATAATATGGTGAACATTTTGCTTTGTTAATAGATTTTTGATATCTTTTATAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTTAAGGGGTGGAGTTCTATTAGAGGAAATACGGTATGTCTAGAAACTTTTTTCCTAGTTTTAAACATATTTTGCATTTACAATTCTATTTTGAAAATAAACCCATAGTAATTCAAAGACTAGAAACACTCTAAAGTCTYACATTCATAGCGAGAAATTTTAGAAAATGTGAATTTCATAAATTTAATTTTATTCAGATTCAGTCTTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32276</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>314377</contig_pos>
        <strand>+</strand>
        <context>TCTCGGAATT[C/G]TAAATTCTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAAAACGATTTTAGAAACTCCAGACTTCAAAAATCAAAAATCTCGGAATT</left_flank>
        <right_flank>TAAATTCTCAGAATCTTCAAATCAGAGTGCTCTAATTGGCGCCCACACTA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCATATTTCCTCTAATAGAAGCCCAGCCAAACCGGCAACTTTGAGCTCAATTATCTCGATTCCTGCGACAGATATCAAAAATGTGTCAATTGATAAAATATTGGTGATAATATGGTGAACATTTTGCTTTGTTAATAGATTTTTGATATCTTTTATAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTTAAGGGGTGGAGTTCTATTAGAGGAAATACGGTATGTCTAGAAACTTTTTTCCTAGTTTTAAACATATTTTGCATTTACAATTCTATTTTGAAAATAAACCCATAGTAATTCAAAGACTAGAAACACTCTAAAGTCTTACATTCATAGCGAGAAATTTTAGAAAATGTGAATTTCATAAATTTAATTTTATTCAGATTCAGTCTTCAACTTTTAGAAGAATTAAGACCTAAATTTTTGTAATAAATCTACAGTAATCGGAAAACGATTTTAGAAACTCCAGACTTCAAAAATCAAAAATCTCGGAATTCTAAATTCTCAGAATCTTCAAATCAGAGTGCTCTAATTGGCGCCCACACTACGCGTACTTTGAGCTCAACTGTCTCGGTCCCTATGAGAGATATCAGAAACATGTCAACTGATGAAATATTGGTGATATTATGATAAATAATTTATCAGTTAAGAAATTTCTGATACCTCTTATAGGAACCGAGATAATTGCGCTGAAGCGTAATTACCTAATTTCTCTAATAGGAGCCAAGCCTATGCGTGCACTTTAAACTTAATTATCTCGGTTCCTTTGAGATATATCAAAAATTTATCAACTGATAAAATATTGGTGATACTATGATAAACAGTTTAACAATATACAGATTCTGGATATCTCTTATATTAAACGAGATAATTGAGCTCAAAGATGAAGGGTTGAATAGGATTTTATTGGAGGGAATACGGTAAGCGGAATTCTTTATGCTTTCTTCTACTTAATACTACAGTACGTCGGGTACACTTTTATTCTACATCTTTTTAT</canonical>
            <polymorphic>ATCATATTTCCTCTAATAGAAGCCCAGCCAAACCGGCAACTTTGAGCTCAATTATCTCGATTCCTGCGACAGATATCAAAAATGTGTCAATTGATAAAATATTGGTGATAATATGGTGAACATTTTGCTTTGTTAATAGATTTTTGATATCTTTTATAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTTAAGGGGTGGAGTTCTATTAGAGGAAATACGGTATGTCTAGAAACTTTTTTCCTAGTTTTAAACATATTTTGCATTTACAATTCTATTTTGAAAATAAACCCATAGTAATTCAAAGACTAGAAACACTCTAAAGTCTTACATTCATAGCGAGAAATTTTAGAAAATGTGAATTTCATAAATTTAATTTTATTCAGATTCAGTCTTCAACTTTTAGAAGAATTAAGACCTAAATTTTTGTAATAAATCTACAGTAATCGGAAAACGATTTTAGAAACTCCAGACTTCAAAAATCAAAAATCTCGGAATTSTAAATTCTCAGAATCTTCAAATCAGAGTGCTCTAATTGGCGCCCACACTACGCGTACTTTGAGCTCAACTGTCTCGGTCCCTATGAGAGATATCAGAAACATGTCAACTGATGAAATATTGGTGATATTATGATAAATAATTTATCAGTTAAGAAATTTCTGATACCTCTTATAGGAACCGAGATAATTGCGCTGAAGCGTAATTACCTAATTTCTCTAATAGGAGCCAAGCCTATGCGTGCACTTTAAACTTAATTATCTCGGTTCCTTTGAGATATATCAAAAATTTATCAACTGATAAAATATTGGTGATACTATGATAAACAGTTTAACAATATACAGATTCTGGATATCTCTTATATTAAACGAGATAATTGAGCTCAAAGATGAAGGGTTGAATAGGATTTTATTGGAGGGAATACGGTAAGCGGAATTCTTTATGCTTTCTTCTACTTAATACTACAGTACGTCGGGTACACTTTTATTCTACATCTTTTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>344 152 147 130 74 69 52 16 9 7</canonical_bands>
                <polymorphic_bands>344 152 147 130 81 69 52 16 9</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>495 436 69</canonical_bands>
                <polymorphic_bands>931 69</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTACAGTAATCGGAAAACGAT</pcr_primer_p1>
		<pcr_primer_p2>GGCTCCTATTAGAGAAATTAGGT</pcr_primer_p2>
		<pcr_amplicon_size>293</pcr_amplicon_size>
		<canonical_amplicon>ATCTACAGTAATCGGAAAACGATTTTAGAAACTCCAGACTTCAAAAATCAAAAATCTCGGAATTCTAAATTCTCAGAATCTTCAAATCAGAGTGCTCTAATTGGCGCCCACACTACGCGTACTTTGAGCTCAACTGTCTCGGTCCCTATGAGAGATATCAGAAACATGTCAACTGATGAAATATTGGTGATATTATGATAAATAATTTATCAGTTAAGAAATTTCTGATACCTCTTATAGGAACCGAGATAATTGCGCTGAAGCGTAATTACCTAATTTCTCTAATAGGAGCC</canonical_amplicon>
		<polymorphic_amplicon>ATCTACAGTAATCGGAAAACGATTTTAGAAACTCCAGACTTCAAAAATCAAAAATCTCGGAATTSTAAATTCTCAGAATCTTCAAATCAGAGTGCTCTAATTGGCGCCCACACTACGCGTACTTTGAGCTCAACTGTCTCGGTCCCTATGAGAGATATCAGAAACATGTCAACTGATGAAATATTGGTGATATTATGATAAATAATTTATCAGTTAAGAAATTTCTGATACCTCTTATAGGAACCGAGATAATTGCGCTGAAGCGTAATTACCTAATTTCTCTAATAGGAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32277</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>314517</contig_pos>
        <strand></strand>
        <context>atgataaata[A/G]tttatcagtt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATCAGAAACATGTCAACTGATGAAATATTGGTGATATTATGATAAATA</left_flank>
        <right_flank>TTTATCAGTTAAGAAATTTCTGATACCTCTTATAGGAACCGAGATAATTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTGATATCTTTTATAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTTAAGGGGTGGAGTTCTATTAGAGGAAATACGGTATGTCTAGAAACTTTTTTCCTAGTTTTAAACATATTTTGCATTTACAATTCTATTTTGAAAATAAACCCATAGTAATTCAAAGACTAGAAACACTCTAAAGTCTTACATTCATAGCGAGAAATTTTAGAAAATGTGAATTTCATAAATTTAATTTTATTCAGATTCAGTCTTCAACTTTTAGAAGAATTAAGACCTAAATTTTTGTAATAAATCTACAGTAATCGGAAAACGATTTTAGAAACTCCAGACTTCAAAAATCAAAAATCTCGGAATTCTAAATTCTCAGAATCTTCAAATCAGAGTGCTCTAATTGGCGCCCACACTACGCGTACTTTGAGCTCAACTGTCTCGGTCCCTATGAGAGATATCAGAAACATGTCAACTGATGAAATATTGGTGATATTATGATAAATAATTTATCAGTTAAGAAATTTCTGATACCTCTTATAGGAACCGAGATAATTGCGCTGAAGCGTAATTACCTAATTTCTCTAATAGGAGCCAAGCCTATGCGTGCACTTTAAACTTAATTATCTCGGTTCCTTTGAGATATATCAAAAATTTATCAACTGATAAAATATTGGTGATACTATGATAAACAGTTTAACAATATACAGATTCTGGATATCTCTTATATTAAACGAGATAATTGAGCTCAAAGATGAAGGGTTGAATAGGATTTTATTGGAGGGAATACGGTAAGCGGAATTCTTTATGCTTTCTTCTACTTAATACTACAGTACGTCGGGTACACTTTTATTCTACATCTTTTTATTTTCAATCTCCATGATCCCTGTTCCTGTTTTTCCATTTATTTTTATCTCTGTTTTTCGATCCACCAACTATTGCACCACACCTTGAAAAACGCAACTCTGTGTTGTTTTTCAAAAGGCAACTTGTTTTTGCCACTCGTTC</canonical>
            <polymorphic>TTTTTGATATCTTTTATAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTTAAGGGGTGGAGTTCTATTAGAGGAAATACGGTATGTCTAGAAACTTTTTTCCTAGTTTTAAACATATTTTGCATTTACAATTCTATTTTGAAAATAAACCCATAGTAATTCAAAGACTAGAAACACTCTAAAGTCTTACATTCATAGCGAGAAATTTTAGAAAATGTGAATTTCATAAATTTAATTTTATTCAGATTCAGTCTTCAACTTTTAGAAGAATTAAGACCTAAATTTTTGTAATAAATCTACAGTAATCGGAAAACGATTTTAGAAACTCCAGACTTCAAAAATCAAAAATCTCGGAATTCTAAATTCTCAGAATCTTCAAATCAGAGTGCTCTAATTGGCGCCCACACTACGCGTACTTTGAGCTCAACTGTCTCGGTCCCTATGAGAGATATCAGAAACATGTCAACTGATGAAATATTGGTGATATTATGATAAATARTTTATCAGTTAAGAAATTTCTGATACCTCTTATAGGAACCGAGATAATTGCGCTGAAGCGTAATTACCTAATTTCTCTAATAGGAGCCAAGCCTATGCGTGCACTTTAAACTTAATTATCTCGGTTCCTTTGAGATATATCAAAAATTTATCAACTGATAAAATATTGGTGATACTATGATAAACAGTTTAACAATATACAGATTCTGGATATCTCTTATATTAAACGAGATAATTGAGCTCAAAGATGAAGGGTTGAATAGGATTTTATTGGAGGGAATACGGTAAGCGGAATTCTTTATGCTTTCTTCTACTTAATACTACAGTACGTCGGGTACACTTTTATTCTACATCTTTTTATTTTCAATCTCCATGATCCCTGTTCCTGTTTTTCCATTTATTTTTATCTCTGTTTTTCGATCCACCAACTATTGCACCACACCTTGAAAAACGCAACTCTGTGTTGTTTTTCAAAAGGCAACTTGTTTTTGCCACTCGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>209 105 100 88 74 59 46 44 35 31 31 31 30 28 16 16 16 12 9 8 7 5</canonical_bands>
                <polymorphic_bands>209 121 100 88 74 59 46 44 35 31 31 31 30 28 16 16 12 9 8 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGACTTCAAAAATCAAAAATCT</pcr_primer_p1>
		<pcr_primer_p2>GGCTCCTATTAGAGAAATTAGGT</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>CAGACTTCAAAAATCAAAAATCTCGGAATTCTAAATTCTCAGAATCTTCAAATCAGAGTGCTCTAATTGGCGCCCACACTACGCGTACTTTGAGCTCAACTGTCTCGGTCCCTATGAGAGATATCAGAAACATGTCAACTGATGAAATATTGGTGATATTATGATAAATAATTTATCAGTTAAGAAATTTCTGATACCTCTTATAGGAACCGAGATAATTGCGCTGAAGCGTAATTACCTAATTTCTCTAATAGGAGCC</canonical_amplicon>
		<polymorphic_amplicon>CAGACTTCAAAAATCAAAAATCTCGGAATTCTAAATTCTCAGAATCTTCAAATCAGAGTGCTCTAATTGGCGCCCACACTACGCGTACTTTGAGCTCAACTGTCTCGGTCCCTATGAGAGATATCAGAAACATGTCAACTGATGAAATATTGGTGATATTATGATAAATARTTTATCAGTTAAGAAATTTCTGATACCTCTTATAGGAACCGAGATAATTGCGCTGAAGCGTAATTACCTAATTTCTCTAATAGGAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32278</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>314622</contig_pos>
        <strand></strand>
        <context>ATGCGTGCac[T/C]ttaaacttaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAAGCGTAATTACCTAATTTCTCTAATAGGAGCCAAGCCTATGCGTGCAC</left_flank>
        <right_flank>TTAAACTTAATTATCTCGGTTCCTTTGAGATATATCAAAAATTTATCAAC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTTTAAACATATTTTGCATTTACAATTCTATTTTGAAAATAAACCCATAGTAATTCAAAGACTAGAAACACTCTAAAGTCTTACATTCATAGCGAGAAATTTTAGAAAATGTGAATTTCATAAATTTAATTTTATTCAGATTCAGTCTTCAACTTTTAGAAGAATTAAGACCTAAATTTTTGTAATAAATCTACAGTAATCGGAAAACGATTTTAGAAACTCCAGACTTCAAAAATCAAAAATCTCGGAATTCTAAATTCTCAGAATCTTCAAATCAGAGTGCTCTAATTGGCGCCCACACTACGCGTACTTTGAGCTCAACTGTCTCGGTCCCTATGAGAGATATCAGAAACATGTCAACTGATGAAATATTGGTGATATTATGATAAATAATTTATCAGTTAAGAAATTTCTGATACCTCTTATAGGAACCGAGATAATTGCGCTGAAGCGTAATTACCTAATTTCTCTAATAGGAGCCAAGCCTATGCGTGCACTTTAAACTTAATTATCTCGGTTCCTTTGAGATATATCAAAAATTTATCAACTGATAAAATATTGGTGATACTATGATAAACAGTTTAACAATATACAGATTCTGGATATCTCTTATATTAAACGAGATAATTGAGCTCAAAGATGAAGGGTTGAATAGGATTTTATTGGAGGGAATACGGTAAGCGGAATTCTTTATGCTTTCTTCTACTTAATACTACAGTACGTCGGGTACACTTTTATTCTACATCTTTTTATTTTCAATCTCCATGATCCCTGTTCCTGTTTTTCCATTTATTTTTATCTCTGTTTTTCGATCCACCAACTATTGCACCACACCTTGAAAAACGCAACTCTGTGTTGTTTTTCAAAAGGCAACTTGTTTTTGCCACTCGTTCCTTTCTTTCCTCACCCTTTCTCTCCCTCTCTCTCTTTTAATTTTACAATTTTCAATCGGCTCCTACTCTTCTTCTTTTTATCATTTTCTCTTTTCTATTTCTTCA</canonical>
            <polymorphic>AGTTTTAAACATATTTTGCATTTACAATTCTATTTTGAAAATAAACCCATAGTAATTCAAAGACTAGAAACACTCTAAAGTCTTACATTCATAGCGAGAAATTTTAGAAAATGTGAATTTCATAAATTTAATTTTATTCAGATTCAGTCTTCAACTTTTAGAAGAATTAAGACCTAAATTTTTGTAATAAATCTACAGTAATCGGAAAACGATTTTAGAAACTCCAGACTTCAAAAATCAAAAATCTCGGAATTCTAAATTCTCAGAATCTTCAAATCAGAGTGCTCTAATTGGCGCCCACACTACGCGTACTTTGAGCTCAACTGTCTCGGTCCCTATGAGAGATATCAGAAACATGTCAACTGATGAAATATTGGTGATATTATGATAAATAATTTATCAGTTAAGAAATTTCTGATACCTCTTATAGGAACCGAGATAATTGCGCTGAAGCGTAATTACCTAATTTCTCTAATAGGAGCCAAGCCTATGCGTGCACYTTAAACTTAATTATCTCGGTTCCTTTGAGATATATCAAAAATTTATCAACTGATAAAATATTGGTGATACTATGATAAACAGTTTAACAATATACAGATTCTGGATATCTCTTATATTAAACGAGATAATTGAGCTCAAAGATGAAGGGTTGAATAGGATTTTATTGGAGGGAATACGGTAAGCGGAATTCTTTATGCTTTCTTCTACTTAATACTACAGTACGTCGGGTACACTTTTATTCTACATCTTTTTATTTTCAATCTCCATGATCCCTGTTCCTGTTTTTCCATTTATTTTTATCTCTGTTTTTCGATCCACCAACTATTGCACCACACCTTGAAAAACGCAACTCTGTGTTGTTTTTCAAAAGGCAACTTGTTTTTGCCACTCGTTCCTTTCTTTCCTCACCCTTTCTCTCCCTCTCTCTCTTTTAATTTTACAATTTTCAATCGGCTCCTACTCTTCTTCTTTTTATCATTTTCTCTTTTCTATTTCTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>498 496 6</canonical_bands>
                <polymorphic_bands>994 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAATCTTCAAATCAGAGTGCT</pcr_primer_p1>
		<pcr_primer_p2>CCTCCAATAAAATCCTATTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>407</pcr_amplicon_size>
		<canonical_amplicon>AGAATCTTCAAATCAGAGTGCTCTAATTGGCGCCCACACTACGCGTACTTTGAGCTCAACTGTCTCGGTCCCTATGAGAGATATCAGAAACATGTCAACTGATGAAATATTGGTGATATTATGATAAATAATTTATCAGTTAAGAAATTTCTGATACCTCTTATAGGAACCGAGATAATTGCGCTGAAGCGTAATTACCTAATTTCTCTAATAGGAGCCAAGCCTATGCGTGCACTTTAAACTTAATTATCTCGGTTCCTTTGAGATATATCAAAAATTTATCAACTGATAAAATATTGGTGATACTATGATAAACAGTTTAACAATATACAGATTCTGGATATCTCTTATATTAAACGAGATAATTGAGCTCAAAGATGAAGGGTTGAATAGGATTTTATTGGAGG</canonical_amplicon>
		<polymorphic_amplicon>AGAATCTTCAAATCAGAGTGCTCTAATTGGCGCCCACACTACGCGTACTTTGAGCTCAACTGTCTCGGTCCCTATGAGAGATATCAGAAACATGTCAACTGATGAAATATTGGTGATATTATGATAAATAATTTATCAGTTAAGAAATTTCTGATACCTCTTATAGGAACCGAGATAATTGCGCTGAAGCGTAATTACCTAATTTCTCTAATAGGAGCCAAGCCTATGCGTGCACYTTAAACTTAATTATCTCGGTTCCTTTGAGATATATCAAAAATTTATCAACTGATAAAATATTGGTGATACTATGATAAACAGTTTAACAATATACAGATTCTGGATATCTCTTATATTAAACGAGATAATTGAGCTCAAAGATGAAGGGTTGAATAGGATTTTATTGGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32279</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>314633</contig_pos>
        <strand></strand>
        <context>ttaaacttaa[T/G]tatctcggtt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ACCTAATTTCTCTAATAGGAGCCAAGCCTATGCGTGCACTTTAAACTTAA</left_flank>
        <right_flank>TATCTCGGTTCCTTTGAGATATATCAAAAATTTATCAACTGATAAAATAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTTGCATTTACAATTCTATTTTGAAAATAAACCCATAGTAATTCAAAGACTAGAAACACTCTAAAGTCTTACATTCATAGCGAGAAATTTTAGAAAATGTGAATTTCATAAATTTAATTTTATTCAGATTCAGTCTTCAACTTTTAGAAGAATTAAGACCTAAATTTTTGTAATAAATCTACAGTAATCGGAAAACGATTTTAGAAACTCCAGACTTCAAAAATCAAAAATCTCGGAATTCTAAATTCTCAGAATCTTCAAATCAGAGTGCTCTAATTGGCGCCCACACTACGCGTACTTTGAGCTCAACTGTCTCGGTCCCTATGAGAGATATCAGAAACATGTCAACTGATGAAATATTGGTGATATTATGATAAATAATTTATCAGTTAAGAAATTTCTGATACCTCTTATAGGAACCGAGATAATTGCGCTGAAGCGTAATTACCTAATTTCTCTAATAGGAGCCAAGCCTATGCGTGCACTTTAAACTTAATTATCTCGGTTCCTTTGAGATATATCAAAAATTTATCAACTGATAAAATATTGGTGATACTATGATAAACAGTTTAACAATATACAGATTCTGGATATCTCTTATATTAAACGAGATAATTGAGCTCAAAGATGAAGGGTTGAATAGGATTTTATTGGAGGGAATACGGTAAGCGGAATTCTTTATGCTTTCTTCTACTTAATACTACAGTACGTCGGGTACACTTTTATTCTACATCTTTTTATTTTCAATCTCCATGATCCCTGTTCCTGTTTTTCCATTTATTTTTATCTCTGTTTTTCGATCCACCAACTATTGCACCACACCTTGAAAAACGCAACTCTGTGTTGTTTTTCAAAAGGCAACTTGTTTTTGCCACTCGTTCCTTTCTTTCCTCACCCTTTCTCTCCCTCTCTCTCTTTTAATTTTACAATTTTCAATCGGCTCCTACTCTTCTTCTTTTTATCATTTTCTCTTTTCTATTTCTTCAGATTGACCACA</canonical>
            <polymorphic>TATTTTGCATTTACAATTCTATTTTGAAAATAAACCCATAGTAATTCAAAGACTAGAAACACTCTAAAGTCTTACATTCATAGCGAGAAATTTTAGAAAATGTGAATTTCATAAATTTAATTTTATTCAGATTCAGTCTTCAACTTTTAGAAGAATTAAGACCTAAATTTTTGTAATAAATCTACAGTAATCGGAAAACGATTTTAGAAACTCCAGACTTCAAAAATCAAAAATCTCGGAATTCTAAATTCTCAGAATCTTCAAATCAGAGTGCTCTAATTGGCGCCCACACTACGCGTACTTTGAGCTCAACTGTCTCGGTCCCTATGAGAGATATCAGAAACATGTCAACTGATGAAATATTGGTGATATTATGATAAATAATTTATCAGTTAAGAAATTTCTGATACCTCTTATAGGAACCGAGATAATTGCGCTGAAGCGTAATTACCTAATTTCTCTAATAGGAGCCAAGCCTATGCGTGCACTTTAAACTTAAKTATCTCGGTTCCTTTGAGATATATCAAAAATTTATCAACTGATAAAATATTGGTGATACTATGATAAACAGTTTAACAATATACAGATTCTGGATATCTCTTATATTAAACGAGATAATTGAGCTCAAAGATGAAGGGTTGAATAGGATTTTATTGGAGGGAATACGGTAAGCGGAATTCTTTATGCTTTCTTCTACTTAATACTACAGTACGTCGGGTACACTTTTATTCTACATCTTTTTATTTTCAATCTCCATGATCCCTGTTCCTGTTTTTCCATTTATTTTTATCTCTGTTTTTCGATCCACCAACTATTGCACCACACCTTGAAAAACGCAACTCTGTGTTGTTTTTCAAAAGGCAACTTGTTTTTGCCACTCGTTCCTTTCTTTCCTCACCCTTTCTCTCCCTCTCTCTCTTTTAATTTTACAATTTTCAATCGGCTCCTACTCTTCTTCTTTTTATCATTTTCTCTTTTCTATTTCTTCAGATTGACCACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>247 105 88 74 70 59 46 44 35 31 31 31 28 16 16 16 14 12 9 8 8 7 5</canonical_bands>
                <polymorphic_bands>247 105 88 75 74 70 59 46 35 31 31 28 16 16 16 14 12 9 8 8 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAATCTTCAAATCAGAGTGCT</pcr_primer_p1>
		<pcr_primer_p2>CCTCCAATAAAATCCTATTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>407</pcr_amplicon_size>
		<canonical_amplicon>AGAATCTTCAAATCAGAGTGCTCTAATTGGCGCCCACACTACGCGTACTTTGAGCTCAACTGTCTCGGTCCCTATGAGAGATATCAGAAACATGTCAACTGATGAAATATTGGTGATATTATGATAAATAATTTATCAGTTAAGAAATTTCTGATACCTCTTATAGGAACCGAGATAATTGCGCTGAAGCGTAATTACCTAATTTCTCTAATAGGAGCCAAGCCTATGCGTGCACTTTAAACTTAATTATCTCGGTTCCTTTGAGATATATCAAAAATTTATCAACTGATAAAATATTGGTGATACTATGATAAACAGTTTAACAATATACAGATTCTGGATATCTCTTATATTAAACGAGATAATTGAGCTCAAAGATGAAGGGTTGAATAGGATTTTATTGGAGG</canonical_amplicon>
		<polymorphic_amplicon>AGAATCTTCAAATCAGAGTGCTCTAATTGGCGCCCACACTACGCGTACTTTGAGCTCAACTGTCTCGGTCCCTATGAGAGATATCAGAAACATGTCAACTGATGAAATATTGGTGATATTATGATAAATAATTTATCAGTTAAGAAATTTCTGATACCTCTTATAGGAACCGAGATAATTGCGCTGAAGCGTAATTACCTAATTTCTCTAATAGGAGCCAAGCCTATGCGTGCACTTTAAACTTAAKTATCTCGGTTCCTTTGAGATATATCAAAAATTTATCAACTGATAAAATATTGGTGATACTATGATAAACAGTTTAACAATATACAGATTCTGGATATCTCTTATATTAAACGAGATAATTGAGCTCAAAGATGAAGGGTTGAATAGGATTTTATTGGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32280</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>314667</contig_pos>
        <strand></strand>
        <context>tcaaaaattt[A/G]tcaactgata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCACTTTAAACTTAATTATCTCGGTTCCTTTGAGATATATCAAAAATTT</left_flank>
        <right_flank>TCAACTGATAAAATATTGGTGATACTATGATAAACAGTTTAACAATATAC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCATAGTAATTCAAAGACTAGAAACACTCTAAAGTCTTACATTCATAGCGAGAAATTTTAGAAAATGTGAATTTCATAAATTTAATTTTATTCAGATTCAGTCTTCAACTTTTAGAAGAATTAAGACCTAAATTTTTGTAATAAATCTACAGTAATCGGAAAACGATTTTAGAAACTCCAGACTTCAAAAATCAAAAATCTCGGAATTCTAAATTCTCAGAATCTTCAAATCAGAGTGCTCTAATTGGCGCCCACACTACGCGTACTTTGAGCTCAACTGTCTCGGTCCCTATGAGAGATATCAGAAACATGTCAACTGATGAAATATTGGTGATATTATGATAAATAATTTATCAGTTAAGAAATTTCTGATACCTCTTATAGGAACCGAGATAATTGCGCTGAAGCGTAATTACCTAATTTCTCTAATAGGAGCCAAGCCTATGCGTGCACTTTAAACTTAATTATCTCGGTTCCTTTGAGATATATCAAAAATTTATCAACTGATAAAATATTGGTGATACTATGATAAACAGTTTAACAATATACAGATTCTGGATATCTCTTATATTAAACGAGATAATTGAGCTCAAAGATGAAGGGTTGAATAGGATTTTATTGGAGGGAATACGGTAAGCGGAATTCTTTATGCTTTCTTCTACTTAATACTACAGTACGTCGGGTACACTTTTATTCTACATCTTTTTATTTTCAATCTCCATGATCCCTGTTCCTGTTTTTCCATTTATTTTTATCTCTGTTTTTCGATCCACCAACTATTGCACCACACCTTGAAAAACGCAACTCTGTGTTGTTTTTCAAAAGGCAACTTGTTTTTGCCACTCGTTCCTTTCTTTCCTCACCCTTTCTCTCCCTCTCTCTCTTTTAATTTTACAATTTTCAATCGGCTCCTACTCTTCTTCTTTTTATCATTTTCTCTTTTCTATTTCTTCAGATTGACCACACCACGCCTGTCCAAAATGTCACGTAGCCGGTGTA</canonical>
            <polymorphic>CCCATAGTAATTCAAAGACTAGAAACACTCTAAAGTCTTACATTCATAGCGAGAAATTTTAGAAAATGTGAATTTCATAAATTTAATTTTATTCAGATTCAGTCTTCAACTTTTAGAAGAATTAAGACCTAAATTTTTGTAATAAATCTACAGTAATCGGAAAACGATTTTAGAAACTCCAGACTTCAAAAATCAAAAATCTCGGAATTCTAAATTCTCAGAATCTTCAAATCAGAGTGCTCTAATTGGCGCCCACACTACGCGTACTTTGAGCTCAACTGTCTCGGTCCCTATGAGAGATATCAGAAACATGTCAACTGATGAAATATTGGTGATATTATGATAAATAATTTATCAGTTAAGAAATTTCTGATACCTCTTATAGGAACCGAGATAATTGCGCTGAAGCGTAATTACCTAATTTCTCTAATAGGAGCCAAGCCTATGCGTGCACTTTAAACTTAATTATCTCGGTTCCTTTGAGATATATCAAAAATTTRTCAACTGATAAAATATTGGTGATACTATGATAAACAGTTTAACAATATACAGATTCTGGATATCTCTTATATTAAACGAGATAATTGAGCTCAAAGATGAAGGGTTGAATAGGATTTTATTGGAGGGAATACGGTAAGCGGAATTCTTTATGCTTTCTTCTACTTAATACTACAGTACGTCGGGTACACTTTTATTCTACATCTTTTTATTTTCAATCTCCATGATCCCTGTTCCTGTTTTTCCATTTATTTTTATCTCTGTTTTTCGATCCACCAACTATTGCACCACACCTTGAAAAACGCAACTCTGTGTTGTTTTTCAAAAGGCAACTTGTTTTTGCCACTCGTTCCTTTCTTTCCTCACCCTTTCTCTCCCTCTCTCTCTTTTAATTTTACAATTTTCAATCGGCTCCTACTCTTCTTCTTTTTATCATTTTCTCTTTTCTATTTCTTCAGATTGACCACACCACGCCTGTCCAAAATGTCACGTAGCCGGTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTAATAGGAGCCAAGCCTAT</pcr_primer_p1>
		<pcr_primer_p2>AGCATAAAGAATTCCGCTTAC</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>CTCTAATAGGAGCCAAGCCTATGCGTGCACTTTAAACTTAATTATCTCGGTTCCTTTGAGATATATCAAAAATTTATCAACTGATAAAATATTGGTGATACTATGATAAACAGTTTAACAATATACAGATTCTGGATATCTCTTATATTAAACGAGATAATTGAGCTCAAAGATGAAGGGTTGAATAGGATTTTATTGGAGGGAATACGGTAAGCGGAATTCTTTATGCT</canonical_amplicon>
		<polymorphic_amplicon>CTCTAATAGGAGCCAAGCCTATGCGTGCACTTTAAACTTAATTATCTCGGTTCCTTTGAGATATATCAAAAATTTRTCAACTGATAAAATATTGGTGATACTATGATAAACAGTTTAACAATATACAGATTCTGGATATCTCTTATATTAAACGAGATAATTGAGCTCAAAGATGAAGGGTTGAATAGGATTTTATTGGAGGGAATACGGTAAGCGGAATTCTTTATGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32281</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>314704</contig_pos>
        <strand></strand>
        <context>atgataaaca[G/A]tttaacaata</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATATCAAAAATTTATCAACTGATAAAATATTGGTGATACTATGATAAACA</left_flank>
        <right_flank>TTTAACAATATACAGATTCTGGATATCTCTTATATTAAACGAGATAATTG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACATTCATAGCGAGAAATTTTAGAAAATGTGAATTTCATAAATTTAATTTTATTCAGATTCAGTCTTCAACTTTTAGAAGAATTAAGACCTAAATTTTTGTAATAAATCTACAGTAATCGGAAAACGATTTTAGAAACTCCAGACTTCAAAAATCAAAAATCTCGGAATTCTAAATTCTCAGAATCTTCAAATCAGAGTGCTCTAATTGGCGCCCACACTACGCGTACTTTGAGCTCAACTGTCTCGGTCCCTATGAGAGATATCAGAAACATGTCAACTGATGAAATATTGGTGATATTATGATAAATAATTTATCAGTTAAGAAATTTCTGATACCTCTTATAGGAACCGAGATAATTGCGCTGAAGCGTAATTACCTAATTTCTCTAATAGGAGCCAAGCCTATGCGTGCACTTTAAACTTAATTATCTCGGTTCCTTTGAGATATATCAAAAATTTATCAACTGATAAAATATTGGTGATACTATGATAAACAGTTTAACAATATACAGATTCTGGATATCTCTTATATTAAACGAGATAATTGAGCTCAAAGATGAAGGGTTGAATAGGATTTTATTGGAGGGAATACGGTAAGCGGAATTCTTTATGCTTTCTTCTACTTAATACTACAGTACGTCGGGTACACTTTTATTCTACATCTTTTTATTTTCAATCTCCATGATCCCTGTTCCTGTTTTTCCATTTATTTTTATCTCTGTTTTTCGATCCACCAACTATTGCACCACACCTTGAAAAACGCAACTCTGTGTTGTTTTTCAAAAGGCAACTTGTTTTTGCCACTCGTTCCTTTCTTTCCTCACCCTTTCTCTCCCTCTCTCTCTTTTAATTTTACAATTTTCAATCGGCTCCTACTCTTCTTCTTTTTATCATTTTCTCTTTTCTATTTCTTCAGATTGACCACACCACGCCTGTCCAAAATGTCACGTAGCCGGTGTAGATGTGCACGTCTACATGTGACACGGATTCAGAATTC</canonical>
            <polymorphic>TTACATTCATAGCGAGAAATTTTAGAAAATGTGAATTTCATAAATTTAATTTTATTCAGATTCAGTCTTCAACTTTTAGAAGAATTAAGACCTAAATTTTTGTAATAAATCTACAGTAATCGGAAAACGATTTTAGAAACTCCAGACTTCAAAAATCAAAAATCTCGGAATTCTAAATTCTCAGAATCTTCAAATCAGAGTGCTCTAATTGGCGCCCACACTACGCGTACTTTGAGCTCAACTGTCTCGGTCCCTATGAGAGATATCAGAAACATGTCAACTGATGAAATATTGGTGATATTATGATAAATAATTTATCAGTTAAGAAATTTCTGATACCTCTTATAGGAACCGAGATAATTGCGCTGAAGCGTAATTACCTAATTTCTCTAATAGGAGCCAAGCCTATGCGTGCACTTTAAACTTAATTATCTCGGTTCCTTTGAGATATATCAAAAATTTATCAACTGATAAAATATTGGTGATACTATGATAAACARTTTAACAATATACAGATTCTGGATATCTCTTATATTAAACGAGATAATTGAGCTCAAAGATGAAGGGTTGAATAGGATTTTATTGGAGGGAATACGGTAAGCGGAATTCTTTATGCTTTCTTCTACTTAATACTACAGTACGTCGGGTACACTTTTATTCTACATCTTTTTATTTTCAATCTCCATGATCCCTGTTCCTGTTTTTCCATTTATTTTTATCTCTGTTTTTCGATCCACCAACTATTGCACCACACCTTGAAAAACGCAACTCTGTGTTGTTTTTCAAAAGGCAACTTGTTTTTGCCACTCGTTCCTTTCTTTCCTCACCCTTTCTCTCCCTCTCTCTCTTTTAATTTTACAATTTTCAATCGGCTCCTACTCTTCTTCTTTTTATCATTTTCTCTTTTCTATTTCTTCAGATTGACCACACCACGCCTGTCCAAAATGTCACGTAGCCGGTGTAGATGTGCACGTCTACATGTGACACGGATTCAGAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>363 256 128 115 97 41</canonical_bands>
                <polymorphic_bands>363 353 128 115 41</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTAATAGGAGCCAAGCCTAT</pcr_primer_p1>
		<pcr_primer_p2>AGCATAAAGAATTCCGCTTAC</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>CTCTAATAGGAGCCAAGCCTATGCGTGCACTTTAAACTTAATTATCTCGGTTCCTTTGAGATATATCAAAAATTTATCAACTGATAAAATATTGGTGATACTATGATAAACAGTTTAACAATATACAGATTCTGGATATCTCTTATATTAAACGAGATAATTGAGCTCAAAGATGAAGGGTTGAATAGGATTTTATTGGAGGGAATACGGTAAGCGGAATTCTTTATGCT</canonical_amplicon>
		<polymorphic_amplicon>CTCTAATAGGAGCCAAGCCTATGCGTGCACTTTAAACTTAATTATCTCGGTTCCTTTGAGATATATCAAAAATTTATCAACTGATAAAATATTGGTGATACTATGATAAACARTTTAACAATATACAGATTCTGGATATCTCTTATATTAAACGAGATAATTGAGCTCAAAGATGAAGGGTTGAATAGGATTTTATTGGAGGGAATACGGTAAGCGGAATTCTTTATGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32282</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>316492</contig_pos>
        <strand>+</strand>
        <context>AAGCCAACTC[C/T]TATTTGGCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGAAAAATCAATAAAAGATTTCAGTTCAACACCTCCTTGAAGCCAACTC</left_flank>
        <right_flank>TATTTGGCTGCAACCAGCGGAACCGCGTGTAGTTTCCGTCATCCTCAACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACGTTAGTTTTGACATCTTCAAGTGATTTATCTCATTTGAATGAATTTGTTCAAAAAAGTTGTCAACCACAAAATTGAAGCTCTGTTTTTTTTAGTATACCTGTAATTTTTTTTTGCTTTTTCCATCAAAATCTACTATAGGTTTTTTGACACCCAAAGTGAGCCACTTTCTCTAAAAGGAGCCCACAGAAGCCATCAACTTTAGGCTCAATTATCTCGGCTCCTATCAGAGATACAAAAGTTTTGTCAACTGATAAATTATTTATCTTGAAATCAGCAATGTTTTATCAGTTGACAAATTTTAATATCTTTCAAAGGAACCGAGATAATTTTGCTCAAGAGGACAGTTTGGGTGGGCTTCCTTTAGAGCATTTACGGTCCAAAATGCGCCATTTTCTATCGAAAAAAAAACAAGAATCAGAATTCTCTATTTCTCATTTCATTTGGGGGAAAAATCAATAAAAGATTTCAGTTCAACACCTCCTTGAAGCCAACTCCTATTTGGCTGCAACCAGCGGAACCGCGTGTAGTTTCCGTCATCCTCAACCAGGTGTCGCCCTCACTCATCTCTCAAAACTAACAATTAAAATTGGTGAAGAATGTGGAGGACTCACTTTATCCCATAACTTTGAGAATCTCAAAACGTCATCTTCCCTCTGTAAAACTCTTCACGAAGTGAATTTGGACATTGTCCTATCCGATAATGAAGACGTCACATGTGCGGGATTCCGAGAGTTTTTGAGGTTTTTGAAGGAGATTTCCTGTAAATCTACACTTTGGAACATTCGATTGACTGATAATACGACATCTGGACAAGGGTGGTCTGGACCCGCAAACTTGAATCGGTATCGGAATAAAATGTTCATTTGTTACATCCGAACCATGTTGGATTTATCACTGAAAATCAATCAATTGGAGTTGATGGATAAGAGAAAGGCATCTCCCTATATGTTGGTCATGGCTCCATATAGAAGAACGATTTATATGTTCCCAGAGTT</canonical>
            <polymorphic>ACACGTTAGTTTTGACATCTTCAAGTGATTTATCTCATTTGAATGAATTTGTTCAAAAAAGTTGTCAACCACAAAATTGAAGCTCTGTTTTTTTTAGTATACCTGTAATTTTTTTTTGCTTTTTCCATCAAAATCTACTATAGGTTTTTTGACACCCAAAGTGAGCCACTTTCTCTAAAAGGAGCCCACAGAAGCCATCAACTTTAGGCTCAATTATCTCGGCTCCTATCAGAGATACAAAAGTTTTGTCAACTGATAAATTATTTATCTTGAAATCAGCAATGTTTTATCAGTTGACAAATTTTAATATCTTTCAAAGGAACCGAGATAATTTTGCTCAAGAGGACAGTTTGGGTGGGCTTCCTTTAGAGCATTTACGGTCCAAAATGCGCCATTTTCTATCGAAAAAAAAACAAGAATCAGAATTCTCTATTTCTCATTTCATTTGGGGGAAAAATCAATAAAAGATTTCAGTTCAACACCTCCTTGAAGCCAACTCYTATTTGGCTGCAACCAGCGGAACCGCGTGTAGTTTCCGTCATCCTCAACCAGGTGTCGCCCTCACTCATCTCTCAAAACTAACAATTAAAATTGGTGAAGAATGTGGAGGACTCACTTTATCCCATAACTTTGAGAATCTCAAAACGTCATCTTCCCTCTGTAAAACTCTTCACGAAGTGAATTTGGACATTGTCCTATCCGATAATGAAGACGTCACATGTGCGGGATTCCGAGAGTTTTTGAGGTTTTTGAAGGAGATTTCCTGTAAATCTACACTTTGGAACATTCGATTGACTGATAATACGACATCTGGACAAGGGTGGTCTGGACCCGCAAACTTGAATCGGTATCGGAATAAAATGTTCATTTGTTACATCCGAACCATGTTGGATTTATCACTGAAAATCAATCAATTGGAGTTGATGGATAAGAGAAAGGCATCTCCCTATATGTTGGTCATGGCTCCATATAGAAGAACGATTTATATGTTCCCAGAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCTCTATTTCTCATTTCATTTG</pcr_primer_p1>
		<pcr_primer_p2>GAAGAGTTTTACAGAGGGAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTCTCTATTTCTCATTTCATTTGGGGGAAAAATCAATAAAAGATTTCAGTTCAACACCTCCTTGAAGCCAACTCCTATTTGGCTGCAACCAGCGGAACCGCGTGTAGTTTCCGTCATCCTCAACCAGGTGTCGCCCTCACTCATCTCTCAAAACTAACAATTAAAATTGGTGAAGAATGTGGAGGACTCACTTTATCCCATAACTTTGAGAATCTCAAAACGTCATCTTCCCTCTGTAAAACTCTTC</canonical_amplicon>
		<polymorphic_amplicon>AATTCTCTATTTCTCATTTCATTTGGGGGAAAAATCAATAAAAGATTTCAGTTCAACACCTCCTTGAAGCCAACTCYTATTTGGCTGCAACCAGCGGAACCGCGTGTAGTTTCCGTCATCCTCAACCAGGTGTCGCCCTCACTCATCTCTCAAAACTAACAATTAAAATTGGTGAAGAATGTGGAGGACTCACTTTATCCCATAACTTTGAGAATCTCAAAACGTCATCTTCCCTCTGTAAAACTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32283</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>382099</contig_pos>
        <strand></strand>
        <context>TTAaaaaaat[C/A]caaraatcta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTATCAAACATAATAAAGCTGGCTTACTAAAAACATCTGTTTAAAAAAAT</left_flank>
        <right_flank>CAAGAATCTAGGTCGTGGCATAAAAATCCAAAATTTAGGTCGTGACCTAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGCAATTTGGCAAAAGTGAACTCGGAAATATCTGTAACCAAGGAATGTGCAACGGACAAAAAGAAGCCGTGCTGTGTGATTAGTTGAATCATTTTGATACTTTTTTAGAATTAGACCCCGCCTCATTTTCTAATTTTAACTTATTACTATCGTGAAACCTCTAATATAAGGTCTCCCTAACTTCGAGTCAATTTATCTTGCCTCATGTAAAAACATCAAAAAATTTCAACTGATAAAATGTTTATCCTTTTATCACAAACGTTTTATCAGTTGAAAACTTTTTGATATCTCTTGAGGGGAGCCATTCTATTACAGTTTATACGGTATTTCCGACCACGTGCTTATTGAACTGAATCTCAATGTTGTAGCTATAAATTAGTCGATTCTCCCAAAATTTCTTGTCTTAAAACTTGCTGAAGTCTCAAATCTCTCATGAATTGCCGAATTTTATCAAACATAATAAAGCTGGCTTACTAAAAACATCTGTTTAAAAAAATCCAAGAATCTAGGTCGTGGCATAAAAATCCAAAATTTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTAGGTTGTAAAAATTTGAAAATCTGAAAATCTAAGTAATGACCAAGAAAATTTGAAAATCTAGGTCATGATTTAAAAATCCAAAAACCTAGGTTATGATCGAAAAATCCAAAAACTGGGTCATGATTTAAAACACACAAAAATCTAGGTCATGACCTAAAAACTCGAAAATCTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTCCCGCTCTAAACGTGTATTGACTTCAGACACGAGCAATATGAGTATATTTGGAAGATAGGAAATCAAGATACACAACAATATATTTAGCAGAACTTCCCATAAATCTCAATAAAATTTATTACAGTTGGAATAGAAAAAGTTATATAGAAACAGAAAGCAATAAAAATGACATGAACT</canonical>
            <polymorphic>GTGGCAATTTGGCAAAAGTGAACTCGGAAATATCTGTAACCAAGGAATGTGCAACGGACAAAAAGAAGCCGTGCTGTGTGATTAGTTGAATCATTTTGATACTTTTTTAGAATTAGACCCCGCCTCATTTTCTAATTTTAACTTATTACTATCGTGAAACCTCTAATATAAGGTCTCCCTAACTTCGAGTCAATTTATCTTGCCTCATGTAAAAACATCAAAAAATTTCAACTGATAAAATGTTTATCCTTTTATCACAAACGTTTTATCAGTTGAAAACTTTTTGATATCTCTTGAGGGGAGCCATTCTATTACAGTTTATACGGTATTTCCGACCACGTGCTTATTGAACTGAATCTCAATGTTGTAGCTATAAATTAGTCGATTCTCCCAAAATTTCTTGTCTTAAAACTTGCTGAAGTCTCAAATCTCTCATGAATTGCCGAATTTTATCAAACATAATAAAGCTGGCTTACTAAAAACATCTGTTTAAAAAAATMCAAGAATCTAGGTCGTGGCATAAAAATCCAAAATTTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTAGGTTGTAAAAATTTGAAAATCTGAAAATCTAAGTAATGACCAAGAAAATTTGAAAATCTAGGTCATGATTTAAAAATCCAAAAACCTAGGTTATGATCGAAAAATCCAAAAACTGGGTCATGATTTAAAACACACAAAAATCTAGGTCATGACCTAAAAACTCGAAAATCTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTCCCGCTCTAAACGTGTATTGACTTCAGACACGAGCAATATGAGTATATTTGGAAGATAGGAAATCAAGATACACAACAATATATTTAGCAGAACTTCCCATAAATCTCAATAAAATTTATTACAGTTGGAATAGAAAAAGTTATATAGAAACAGAAAGCAATAAAAATGACATGAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCGAATTTTATCAAACATAATA</pcr_primer_p1>
		<pcr_primer_p2>CATATTGCTCGTGTCTGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>422</pcr_amplicon_size>
		<canonical_amplicon>GCCGAATTTTATCAAACATAATAAAGCTGGCTTACTAAAAACATCTGTTTAAAAAAATCCAAGAATCTAGGTCGTGGCATAAAAATCCAAAATTTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTAGGTTGTAAAAATTTGAAAATCTGAAAATCTAAGTAATGACCAAGAAAATTTGAAAATCTAGGTCATGATTTAAAAATCCAAAAACCTAGGTTATGATCGAAAAATCCAAAAACTGGGTCATGATTTAAAACACACAAAAATCTAGGTCATGACCTAAAAACTCGAAAATCTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTCCCGCTCTAAACGTGTATTGACTTCAGACACGAGCAATATG</canonical_amplicon>
		<polymorphic_amplicon>GCCGAATTTTATCAAACATAATAAAGCTGGCTTACTAAAAACATCTGTTTAAAAAAATMCAAGAATCTAGGTCGTGGCATAAAAATCCAAAATTTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTAGGTTGTAAAAATTTGAAAATCTGAAAATCTAAGTAATGACCAAGAAAATTTGAAAATCTAGGTCATGATTTAAAAATCCAAAAACCTAGGTTATGATCGAAAAATCCAAAAACTGGGTCATGATTTAAAACACACAAAAATCTAGGTCATGACCTAAAAACTCGAAAATCTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTCCCGCTCTAAACGTGTATTGACTTCAGACACGAGCAATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32284</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>382103</contig_pos>
        <strand></strand>
        <context>aaaaatmcaa[G/A]aatctaggtc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAAACATAATAAAGCTGGCTTACTAAAAACATCTGTTTAAAAAAATCCAA</left_flank>
        <right_flank>AATCTAGGTCGTGGCATAAAAATCCAAAATTTAGGTCGTGACCTAGAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATTTGGCAAAAGTGAACTCGGAAATATCTGTAACCAAGGAATGTGCAACGGACAAAAAGAAGCCGTGCTGTGTGATTAGTTGAATCATTTTGATACTTTTTTAGAATTAGACCCCGCCTCATTTTCTAATTTTAACTTATTACTATCGTGAAACCTCTAATATAAGGTCTCCCTAACTTCGAGTCAATTTATCTTGCCTCATGTAAAAACATCAAAAAATTTCAACTGATAAAATGTTTATCCTTTTATCACAAACGTTTTATCAGTTGAAAACTTTTTGATATCTCTTGAGGGGAGCCATTCTATTACAGTTTATACGGTATTTCCGACCACGTGCTTATTGAACTGAATCTCAATGTTGTAGCTATAAATTAGTCGATTCTCCCAAAATTTCTTGTCTTAAAACTTGCTGAAGTCTCAAATCTCTCATGAATTGCCGAATTTTATCAAACATAATAAAGCTGGCTTACTAAAAACATCTGTTTAAAAAAATCCAAGAATCTAGGTCGTGGCATAAAAATCCAAAATTTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTAGGTTGTAAAAATTTGAAAATCTGAAAATCTAAGTAATGACCAAGAAAATTTGAAAATCTAGGTCATGATTTAAAAATCCAAAAACCTAGGTTATGATCGAAAAATCCAAAAACTGGGTCATGATTTAAAACACACAAAAATCTAGGTCATGACCTAAAAACTCGAAAATCTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTCCCGCTCTAAACGTGTATTGACTTCAGACACGAGCAATATGAGTATATTTGGAAGATAGGAAATCAAGATACACAACAATATATTTAGCAGAACTTCCCATAAATCTCAATAAAATTTATTACAGTTGGAATAGAAAAAGTTATATAGAAACAGAAAGCAATAAAAATGACATGAACTGAAA</canonical>
            <polymorphic>CAATTTGGCAAAAGTGAACTCGGAAATATCTGTAACCAAGGAATGTGCAACGGACAAAAAGAAGCCGTGCTGTGTGATTAGTTGAATCATTTTGATACTTTTTTAGAATTAGACCCCGCCTCATTTTCTAATTTTAACTTATTACTATCGTGAAACCTCTAATATAAGGTCTCCCTAACTTCGAGTCAATTTATCTTGCCTCATGTAAAAACATCAAAAAATTTCAACTGATAAAATGTTTATCCTTTTATCACAAACGTTTTATCAGTTGAAAACTTTTTGATATCTCTTGAGGGGAGCCATTCTATTACAGTTTATACGGTATTTCCGACCACGTGCTTATTGAACTGAATCTCAATGTTGTAGCTATAAATTAGTCGATTCTCCCAAAATTTCTTGTCTTAAAACTTGCTGAAGTCTCAAATCTCTCATGAATTGCCGAATTTTATCAAACATAATAAAGCTGGCTTACTAAAAACATCTGTTTAAAAAAATCCAARAATCTAGGTCGTGGCATAAAAATCCAAAATTTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTAGGTTGTAAAAATTTGAAAATCTGAAAATCTAAGTAATGACCAAGAAAATTTGAAAATCTAGGTCATGATTTAAAAATCCAAAAACCTAGGTTATGATCGAAAAATCCAAAAACTGGGTCATGATTTAAAACACACAAAAATCTAGGTCATGACCTAAAAACTCGAAAATCTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTCCCGCTCTAAACGTGTATTGACTTCAGACACGAGCAATATGAGTATATTTGGAAGATAGGAAATCAAGATACACAACAATATATTTAGCAGAACTTCCCATAAATCTCAATAAAATTTATTACAGTTGGAATAGAAAAAGTTATATAGAAACAGAAAGCAATAAAAATGACATGAACTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>500 167 120 99 84 30</canonical_bands>
                <polymorphic_bands>620 167 99 84 30</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 266 120 84 30</canonical_bands>
                <polymorphic_bands>620 266 84 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCGAATTTTATCAAACATAATA</pcr_primer_p1>
		<pcr_primer_p2>CATATTGCTCGTGTCTGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>422</pcr_amplicon_size>
		<canonical_amplicon>GCCGAATTTTATCAAACATAATAAAGCTGGCTTACTAAAAACATCTGTTTAAAAAAATCCAAGAATCTAGGTCGTGGCATAAAAATCCAAAATTTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTAGGTTGTAAAAATTTGAAAATCTGAAAATCTAAGTAATGACCAAGAAAATTTGAAAATCTAGGTCATGATTTAAAAATCCAAAAACCTAGGTTATGATCGAAAAATCCAAAAACTGGGTCATGATTTAAAACACACAAAAATCTAGGTCATGACCTAAAAACTCGAAAATCTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTCCCGCTCTAAACGTGTATTGACTTCAGACACGAGCAATATG</canonical_amplicon>
		<polymorphic_amplicon>GCCGAATTTTATCAAACATAATAAAGCTGGCTTACTAAAAACATCTGTTTAAAAAAATCCAARAATCTAGGTCGTGGCATAAAAATCCAAAATTTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTAGGTTGTAAAAATTTGAAAATCTGAAAATCTAAGTAATGACCAAGAAAATTTGAAAATCTAGGTCATGATTTAAAAATCCAAAAACCTAGGTTATGATCGAAAAATCCAAAAACTGGGTCATGATTTAAAACACACAAAAATCTAGGTCATGACCTAAAAACTCGAAAATCTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTCCCGCTCTAAACGTGTATTGACTTCAGACACGAGCAATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32285</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>382114</contig_pos>
        <strand></strand>
        <context>aatctaggtc[G/A]tgrcmtaaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAGCTGGCTTACTAAAAACATCTGTTTAAAAAAATCCAAGAATCTAGGTC</left_flank>
        <right_flank>TGGCATAAAAATCCAAAATTTAGGTCGTGACCTAGAAAATCTAAAAAATC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTGAACTCGGAAATATCTGTAACCAAGGAATGTGCAACGGACAAAAAGAAGCCGTGCTGTGTGATTAGTTGAATCATTTTGATACTTTTTTAGAATTAGACCCCGCCTCATTTTCTAATTTTAACTTATTACTATCGTGAAACCTCTAATATAAGGTCTCCCTAACTTCGAGTCAATTTATCTTGCCTCATGTAAAAACATCAAAAAATTTCAACTGATAAAATGTTTATCCTTTTATCACAAACGTTTTATCAGTTGAAAACTTTTTGATATCTCTTGAGGGGAGCCATTCTATTACAGTTTATACGGTATTTCCGACCACGTGCTTATTGAACTGAATCTCAATGTTGTAGCTATAAATTAGTCGATTCTCCCAAAATTTCTTGTCTTAAAACTTGCTGAAGTCTCAAATCTCTCATGAATTGCCGAATTTTATCAAACATAATAAAGCTGGCTTACTAAAAACATCTGTTTAAAAAAATCCAAGAATCTAGGTCGTGGCATAAAAATCCAAAATTTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTAGGTTGTAAAAATTTGAAAATCTGAAAATCTAAGTAATGACCAAGAAAATTTGAAAATCTAGGTCATGATTTAAAAATCCAAAAACCTAGGTTATGATCGAAAAATCCAAAAACTGGGTCATGATTTAAAACACACAAAAATCTAGGTCATGACCTAAAAACTCGAAAATCTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTCCCGCTCTAAACGTGTATTGACTTCAGACACGAGCAATATGAGTATATTTGGAAGATAGGAAATCAAGATACACAACAATATATTTAGCAGAACTTCCCATAAATCTCAATAAAATTTATTACAGTTGGAATAGAAAAAGTTATATAGAAACAGAAAGCAATAAAAATGACATGAACTGAAAGTAGCAGAAAA</canonical>
            <polymorphic>AAGTGAACTCGGAAATATCTGTAACCAAGGAATGTGCAACGGACAAAAAGAAGCCGTGCTGTGTGATTAGTTGAATCATTTTGATACTTTTTTAGAATTAGACCCCGCCTCATTTTCTAATTTTAACTTATTACTATCGTGAAACCTCTAATATAAGGTCTCCCTAACTTCGAGTCAATTTATCTTGCCTCATGTAAAAACATCAAAAAATTTCAACTGATAAAATGTTTATCCTTTTATCACAAACGTTTTATCAGTTGAAAACTTTTTGATATCTCTTGAGGGGAGCCATTCTATTACAGTTTATACGGTATTTCCGACCACGTGCTTATTGAACTGAATCTCAATGTTGTAGCTATAAATTAGTCGATTCTCCCAAAATTTCTTGTCTTAAAACTTGCTGAAGTCTCAAATCTCTCATGAATTGCCGAATTTTATCAAACATAATAAAGCTGGCTTACTAAAAACATCTGTTTAAAAAAATCCAAGAATCTAGGTCRTGGCATAAAAATCCAAAATTTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTAGGTTGTAAAAATTTGAAAATCTGAAAATCTAAGTAATGACCAAGAAAATTTGAAAATCTAGGTCATGATTTAAAAATCCAAAAACCTAGGTTATGATCGAAAAATCCAAAAACTGGGTCATGATTTAAAACACACAAAAATCTAGGTCATGACCTAAAAACTCGAAAATCTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTCCCGCTCTAAACGTGTATTGACTTCAGACACGAGCAATATGAGTATATTTGGAAGATAGGAAATCAAGATACACAACAATATATTTAGCAGAACTTCCCATAAATCTCAATAAAATTTATTACAGTTGGAATAGAAAAAGTTATATAGAAACAGAAAGCAATAAAAATGACATGAACTGAAAGTAGCAGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>182 175 120 101 81 76 64 45 43 31 27 22 15 5 5 4 2 2</canonical_bands>
                <polymorphic_bands>202 182 120 101 81 76 64 45 43 31 22 15 5 5 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAGCTGGCTTACTAAAAACAT</pcr_primer_p1>
		<pcr_primer_p2>CATATTGCTCGTGTCTGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>401</pcr_amplicon_size>
		<canonical_amplicon>TAAAGCTGGCTTACTAAAAACATCTGTTTAAAAAAATCCAAGAATCTAGGTCGTGGCATAAAAATCCAAAATTTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTAGGTTGTAAAAATTTGAAAATCTGAAAATCTAAGTAATGACCAAGAAAATTTGAAAATCTAGGTCATGATTTAAAAATCCAAAAACCTAGGTTATGATCGAAAAATCCAAAAACTGGGTCATGATTTAAAACACACAAAAATCTAGGTCATGACCTAAAAACTCGAAAATCTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTCCCGCTCTAAACGTGTATTGACTTCAGACACGAGCAATATG</canonical_amplicon>
		<polymorphic_amplicon>TAAAGCTGGCTTACTAAAAACATCTGTTTAAAAAAATCCAAGAATCTAGGTCRTGGCATAAAAATCCAAAATTTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTAGGTTGTAAAAATTTGAAAATCTGAAAATCTAAGTAATGACCAAGAAAATTTGAAAATCTAGGTCATGATTTAAAAATCCAAAAACCTAGGTTATGATCGAAAAATCCAAAAACTGGGTCATGATTTAAAACACACAAAAATCTAGGTCATGACCTAAAAACTCGAAAATCTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTCCCGCTCTAAACGTGTATTGACTTCAGACACGAGCAATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32286</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>382117</contig_pos>
        <strand></strand>
        <context>ctaggtcrtg[G/A]cmtaaaaayc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTGGCTTACTAAAAACATCTGTTTAAAAAAATCCAAGAATCTAGGTCGTG</left_flank>
        <right_flank>CATAAAAATCCAAAATTTAGGTCGTGACCTAGAAAATCTAAAAAATCTAG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAACTCGGAAATATCTGTAACCAAGGAATGTGCAACGGACAAAAAGAAGCCGTGCTGTGTGATTAGTTGAATCATTTTGATACTTTTTTAGAATTAGACCCCGCCTCATTTTCTAATTTTAACTTATTACTATCGTGAAACCTCTAATATAAGGTCTCCCTAACTTCGAGTCAATTTATCTTGCCTCATGTAAAAACATCAAAAAATTTCAACTGATAAAATGTTTATCCTTTTATCACAAACGTTTTATCAGTTGAAAACTTTTTGATATCTCTTGAGGGGAGCCATTCTATTACAGTTTATACGGTATTTCCGACCACGTGCTTATTGAACTGAATCTCAATGTTGTAGCTATAAATTAGTCGATTCTCCCAAAATTTCTTGTCTTAAAACTTGCTGAAGTCTCAAATCTCTCATGAATTGCCGAATTTTATCAAACATAATAAAGCTGGCTTACTAAAAACATCTGTTTAAAAAAATCCAAGAATCTAGGTCGTGGCATAAAAATCCAAAATTTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTAGGTTGTAAAAATTTGAAAATCTGAAAATCTAAGTAATGACCAAGAAAATTTGAAAATCTAGGTCATGATTTAAAAATCCAAAAACCTAGGTTATGATCGAAAAATCCAAAAACTGGGTCATGATTTAAAACACACAAAAATCTAGGTCATGACCTAAAAACTCGAAAATCTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTCCCGCTCTAAACGTGTATTGACTTCAGACACGAGCAATATGAGTATATTTGGAAGATAGGAAATCAAGATACACAACAATATATTTAGCAGAACTTCCCATAAATCTCAATAAAATTTATTACAGTTGGAATAGAAAAAGTTATATAGAAACAGAAAGCAATAAAAATGACATGAACTGAAAGTAGCAGAAAAAAA</canonical>
            <polymorphic>TGAACTCGGAAATATCTGTAACCAAGGAATGTGCAACGGACAAAAAGAAGCCGTGCTGTGTGATTAGTTGAATCATTTTGATACTTTTTTAGAATTAGACCCCGCCTCATTTTCTAATTTTAACTTATTACTATCGTGAAACCTCTAATATAAGGTCTCCCTAACTTCGAGTCAATTTATCTTGCCTCATGTAAAAACATCAAAAAATTTCAACTGATAAAATGTTTATCCTTTTATCACAAACGTTTTATCAGTTGAAAACTTTTTGATATCTCTTGAGGGGAGCCATTCTATTACAGTTTATACGGTATTTCCGACCACGTGCTTATTGAACTGAATCTCAATGTTGTAGCTATAAATTAGTCGATTCTCCCAAAATTTCTTGTCTTAAAACTTGCTGAAGTCTCAAATCTCTCATGAATTGCCGAATTTTATCAAACATAATAAAGCTGGCTTACTAAAAACATCTGTTTAAAAAAATCCAAGAATCTAGGTCGTGRCATAAAAATCCAAAATTTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTAGGTTGTAAAAATTTGAAAATCTGAAAATCTAAGTAATGACCAAGAAAATTTGAAAATCTAGGTCATGATTTAAAAATCCAAAAACCTAGGTTATGATCGAAAAATCCAAAAACTGGGTCATGATTTAAAACACACAAAAATCTAGGTCATGACCTAAAAACTCGAAAATCTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTCCCGCTCTAAACGTGTATTGACTTCAGACACGAGCAATATGAGTATATTTGGAAGATAGGAAATCAAGATACACAACAATATATTTAGCAGAACTTCCCATAAATCTCAATAAAATTTATTACAGTTGGAATAGAAAAAGTTATATAGAAACAGAAAGCAATAAAAATGACATGAACTGAAAGTAGCAGAAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCTGGCTTACTAAAAACATCT</pcr_primer_p1>
		<pcr_primer_p2>CATATTGCTCGTGTCTGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>399</pcr_amplicon_size>
		<canonical_amplicon>AAGCTGGCTTACTAAAAACATCTGTTTAAAAAAATCCAAGAATCTAGGTCGTGGCATAAAAATCCAAAATTTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTAGGTTGTAAAAATTTGAAAATCTGAAAATCTAAGTAATGACCAAGAAAATTTGAAAATCTAGGTCATGATTTAAAAATCCAAAAACCTAGGTTATGATCGAAAAATCCAAAAACTGGGTCATGATTTAAAACACACAAAAATCTAGGTCATGACCTAAAAACTCGAAAATCTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTCCCGCTCTAAACGTGTATTGACTTCAGACACGAGCAATATG</canonical_amplicon>
		<polymorphic_amplicon>AAGCTGGCTTACTAAAAACATCTGTTTAAAAAAATCCAAGAATCTAGGTCGTGRCATAAAAATCCAAAATTTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTAGGTTGTAAAAATTTGAAAATCTGAAAATCTAAGTAATGACCAAGAAAATTTGAAAATCTAGGTCATGATTTAAAAATCCAAAAACCTAGGTTATGATCGAAAAATCCAAAAACTGGGTCATGATTTAAAACACACAAAAATCTAGGTCATGACCTAAAAACTCGAAAATCTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTCCCGCTCTAAACGTGTATTGACTTCAGACACGAGCAATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32287</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>382119</contig_pos>
        <strand></strand>
        <context>aggtcrtgrc[A/C]taaaaaycca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGCTTACTAAAAACATCTGTTTAAAAAAATCCAAGAATCTAGGTCGTGGC</left_flank>
        <right_flank>TAAAAATCCAAAATTTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTCGGAAATATCTGTAACCAAGGAATGTGCAACGGACAAAAAGAAGCCGTGCTGTGTGATTAGTTGAATCATTTTGATACTTTTTTAGAATTAGACCCCGCCTCATTTTCTAATTTTAACTTATTACTATCGTGAAACCTCTAATATAAGGTCTCCCTAACTTCGAGTCAATTTATCTTGCCTCATGTAAAAACATCAAAAAATTTCAACTGATAAAATGTTTATCCTTTTATCACAAACGTTTTATCAGTTGAAAACTTTTTGATATCTCTTGAGGGGAGCCATTCTATTACAGTTTATACGGTATTTCCGACCACGTGCTTATTGAACTGAATCTCAATGTTGTAGCTATAAATTAGTCGATTCTCCCAAAATTTCTTGTCTTAAAACTTGCTGAAGTCTCAAATCTCTCATGAATTGCCGAATTTTATCAAACATAATAAAGCTGGCTTACTAAAAACATCTGTTTAAAAAAATCCAAGAATCTAGGTCGTGGCATAAAAATCCAAAATTTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTAGGTTGTAAAAATTTGAAAATCTGAAAATCTAAGTAATGACCAAGAAAATTTGAAAATCTAGGTCATGATTTAAAAATCCAAAAACCTAGGTTATGATCGAAAAATCCAAAAACTGGGTCATGATTTAAAACACACAAAAATCTAGGTCATGACCTAAAAACTCGAAAATCTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTCCCGCTCTAAACGTGTATTGACTTCAGACACGAGCAATATGAGTATATTTGGAAGATAGGAAATCAAGATACACAACAATATATTTAGCAGAACTTCCCATAAATCTCAATAAAATTTATTACAGTTGGAATAGAAAAAGTTATATAGAAACAGAAAGCAATAAAAATGACATGAACTGAAAGTAGCAGAAAAAAAGG</canonical>
            <polymorphic>AACTCGGAAATATCTGTAACCAAGGAATGTGCAACGGACAAAAAGAAGCCGTGCTGTGTGATTAGTTGAATCATTTTGATACTTTTTTAGAATTAGACCCCGCCTCATTTTCTAATTTTAACTTATTACTATCGTGAAACCTCTAATATAAGGTCTCCCTAACTTCGAGTCAATTTATCTTGCCTCATGTAAAAACATCAAAAAATTTCAACTGATAAAATGTTTATCCTTTTATCACAAACGTTTTATCAGTTGAAAACTTTTTGATATCTCTTGAGGGGAGCCATTCTATTACAGTTTATACGGTATTTCCGACCACGTGCTTATTGAACTGAATCTCAATGTTGTAGCTATAAATTAGTCGATTCTCCCAAAATTTCTTGTCTTAAAACTTGCTGAAGTCTCAAATCTCTCATGAATTGCCGAATTTTATCAAACATAATAAAGCTGGCTTACTAAAAACATCTGTTTAAAAAAATCCAAGAATCTAGGTCGTGGCMTAAAAATCCAAAATTTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTAGGTTGTAAAAATTTGAAAATCTGAAAATCTAAGTAATGACCAAGAAAATTTGAAAATCTAGGTCATGATTTAAAAATCCAAAAACCTAGGTTATGATCGAAAAATCCAAAAACTGGGTCATGATTTAAAACACACAAAAATCTAGGTCATGACCTAAAAACTCGAAAATCTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTCCCGCTCTAAACGTGTATTGACTTCAGACACGAGCAATATGAGTATATTTGGAAGATAGGAAATCAAGATACACAACAATATATTTAGCAGAACTTCCCATAAATCTCAATAAAATTTATTACAGTTGGAATAGAAAAAGTTATATAGAAACAGAAAGCAATAAAAATGACATGAACTGAAAGTAGCAGAAAAAAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCTGGCTTACTAAAAACATCT</pcr_primer_p1>
		<pcr_primer_p2>CATATTGCTCGTGTCTGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>399</pcr_amplicon_size>
		<canonical_amplicon>AAGCTGGCTTACTAAAAACATCTGTTTAAAAAAATCCAAGAATCTAGGTCGTGGCATAAAAATCCAAAATTTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTAGGTTGTAAAAATTTGAAAATCTGAAAATCTAAGTAATGACCAAGAAAATTTGAAAATCTAGGTCATGATTTAAAAATCCAAAAACCTAGGTTATGATCGAAAAATCCAAAAACTGGGTCATGATTTAAAACACACAAAAATCTAGGTCATGACCTAAAAACTCGAAAATCTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTCCCGCTCTAAACGTGTATTGACTTCAGACACGAGCAATATG</canonical_amplicon>
		<polymorphic_amplicon>AAGCTGGCTTACTAAAAACATCTGTTTAAAAAAATCCAAGAATCTAGGTCGTGGCMTAAAAATCCAAAATTTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTAGGTTGTAAAAATTTGAAAATCTGAAAATCTAAGTAATGACCAAGAAAATTTGAAAATCTAGGTCATGATTTAAAAATCCAAAAACCTAGGTTATGATCGAAAAATCCAAAAACTGGGTCATGATTTAAAACACACAAAAATCTAGGTCATGACCTAAAAACTCGAAAATCTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTCCCGCTCTAAACGTGTATTGACTTCAGACACGAGCAATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32288</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>382126</contig_pos>
        <strand></strand>
        <context>grcmtaaaaa[T/C]ccaaaattta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAAAAACATCTGTTTAAAAAAATCCAAGAATCTAGGTCGTGGCATAAAAA</left_flank>
        <right_flank>CCAAAATTTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATATCTGTAACCAAGGAATGTGCAACGGACAAAAAGAAGCCGTGCTGTGTGATTAGTTGAATCATTTTGATACTTTTTTAGAATTAGACCCCGCCTCATTTTCTAATTTTAACTTATTACTATCGTGAAACCTCTAATATAAGGTCTCCCTAACTTCGAGTCAATTTATCTTGCCTCATGTAAAAACATCAAAAAATTTCAACTGATAAAATGTTTATCCTTTTATCACAAACGTTTTATCAGTTGAAAACTTTTTGATATCTCTTGAGGGGAGCCATTCTATTACAGTTTATACGGTATTTCCGACCACGTGCTTATTGAACTGAATCTCAATGTTGTAGCTATAAATTAGTCGATTCTCCCAAAATTTCTTGTCTTAAAACTTGCTGAAGTCTCAAATCTCTCATGAATTGCCGAATTTTATCAAACATAATAAAGCTGGCTTACTAAAAACATCTGTTTAAAAAAATCCAAGAATCTAGGTCGTGGCATAAAAATCCAAAATTTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTAGGTTGTAAAAATTTGAAAATCTGAAAATCTAAGTAATGACCAAGAAAATTTGAAAATCTAGGTCATGATTTAAAAATCCAAAAACCTAGGTTATGATCGAAAAATCCAAAAACTGGGTCATGATTTAAAACACACAAAAATCTAGGTCATGACCTAAAAACTCGAAAATCTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTCCCGCTCTAAACGTGTATTGACTTCAGACACGAGCAATATGAGTATATTTGGAAGATAGGAAATCAAGATACACAACAATATATTTAGCAGAACTTCCCATAAATCTCAATAAAATTTATTACAGTTGGAATAGAAAAAGTTATATAGAAACAGAAAGCAATAAAAATGACATGAACTGAAAGTAGCAGAAAAAAAGGTGCTGAA</canonical>
            <polymorphic>AAATATCTGTAACCAAGGAATGTGCAACGGACAAAAAGAAGCCGTGCTGTGTGATTAGTTGAATCATTTTGATACTTTTTTAGAATTAGACCCCGCCTCATTTTCTAATTTTAACTTATTACTATCGTGAAACCTCTAATATAAGGTCTCCCTAACTTCGAGTCAATTTATCTTGCCTCATGTAAAAACATCAAAAAATTTCAACTGATAAAATGTTTATCCTTTTATCACAAACGTTTTATCAGTTGAAAACTTTTTGATATCTCTTGAGGGGAGCCATTCTATTACAGTTTATACGGTATTTCCGACCACGTGCTTATTGAACTGAATCTCAATGTTGTAGCTATAAATTAGTCGATTCTCCCAAAATTTCTTGTCTTAAAACTTGCTGAAGTCTCAAATCTCTCATGAATTGCCGAATTTTATCAAACATAATAAAGCTGGCTTACTAAAAACATCTGTTTAAAAAAATCCAAGAATCTAGGTCGTGGCATAAAAAYCCAAAATTTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTAGGTTGTAAAAATTTGAAAATCTGAAAATCTAAGTAATGACCAAGAAAATTTGAAAATCTAGGTCATGATTTAAAAATCCAAAAACCTAGGTTATGATCGAAAAATCCAAAAACTGGGTCATGATTTAAAACACACAAAAATCTAGGTCATGACCTAAAAACTCGAAAATCTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTCCCGCTCTAAACGTGTATTGACTTCAGACACGAGCAATATGAGTATATTTGGAAGATAGGAAATCAAGATACACAACAATATATTTAGCAGAACTTCCCATAAATCTCAATAAAATTTATTACAGTTGGAATAGAAAAAGTTATATAGAAACAGAAAGCAATAAAAATGACATGAACTGAAAGTAGCAGAAAAAAAGGTGCTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCTGGCTTACTAAAAACATCT</pcr_primer_p1>
		<pcr_primer_p2>CATATTGCTCGTGTCTGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>399</pcr_amplicon_size>
		<canonical_amplicon>AAGCTGGCTTACTAAAAACATCTGTTTAAAAAAATCCAAGAATCTAGGTCGTGGCATAAAAATCCAAAATTTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTAGGTTGTAAAAATTTGAAAATCTGAAAATCTAAGTAATGACCAAGAAAATTTGAAAATCTAGGTCATGATTTAAAAATCCAAAAACCTAGGTTATGATCGAAAAATCCAAAAACTGGGTCATGATTTAAAACACACAAAAATCTAGGTCATGACCTAAAAACTCGAAAATCTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTCCCGCTCTAAACGTGTATTGACTTCAGACACGAGCAATATG</canonical_amplicon>
		<polymorphic_amplicon>AAGCTGGCTTACTAAAAACATCTGTTTAAAAAAATCCAAGAATCTAGGTCGTGGCATAAAAAYCCAAAATTTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTAGGTTGTAAAAATTTGAAAATCTGAAAATCTAAGTAATGACCAAGAAAATTTGAAAATCTAGGTCATGATTTAAAAATCCAAAAACCTAGGTTATGATCGAAAAATCCAAAAACTGGGTCATGATTTAAAACACACAAAAATCTAGGTCATGACCTAAAAACTCGAAAATCTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTCCCGCTCTAAACGTGTATTGACTTCAGACACGAGCAATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32289</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>382519</contig_pos>
        <strand></strand>
        <context>GCAGAACTTC[C/T]CATAAATCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGGAAGATAGGAAATCAAGATACACAACAATATATTTAGCAGAACTTC</left_flank>
        <right_flank>CATAAATCTCAATAAAATTTATTACAGTTGGAATAGAAAAAGTTATATAG</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTCAAATCTCTCATGAATTGCCGAATTTTATCAAACATAATAAAGCTGGCTTACTAAAAACATCTGTTTAAAAAAATCCAAGAATCTAGGTCGTGGCATAAAAATCCAAAATTTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTAGGTTGTAAAAATTTGAAAATCTGAAAATCTAAGTAATGACCAAGAAAATTTGAAAATCTAGGTCATGATTTAAAAATCCAAAAACCTAGGTTATGATCGAAAAATCCAAAAACTGGGTCATGATTTAAAACACACAAAAATCTAGGTCATGACCTAAAAACTCGAAAATCTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTCCCGCTCTAAACGTGTATTGACTTCAGACACGAGCAATATGAGTATATTTGGAAGATAGGAAATCAAGATACACAACAATATATTTAGCAGAACTTCCCATAAATCTCAATAAAATTTATTACAGTTGGAATAGAAAAAGTTATATAGAAACAGAAAGCAATAAAAATGACATGAACTGAAAGTAGCAGAAAAAAAGGTGCTGAAAAACTAAAATGTTGAGATGTTGTGCCGTTTATTTTTATGAATTGATGGTTTGAATAACTGTCTATTTGCAACTGATCTACCATTCTTGAAAATTCATCCTCGGTTTTGTCTTTTTGTTAATACAGATGCCACACGATTATCTGATTCTCTAACGACGTATGAGTGGCTGACGATTGGATCAGTATTTGGCCTAAATGCTTGCTCAACGTACCTGAAAAGTACAACTTTTAAAAAATATCAAGAAGTAACTTACGCTCTAGGCACAGTGTGCGTTGGTGGCGTTTTTGTTGCGGCAATATGTCTTGCCCCAATTGCAGTCAGTAATTCGTCTCGAGGGATTCCCCCAAGAAGCAGTTTGATTTTTAGGTATTCTAGCTTTTGAAATGCGTTTCC</canonical>
            <polymorphic>GTCTCAAATCTCTCATGAATTGCCGAATTTTATCAAACATAATAAAGCTGGCTTACTAAAAACATCTGTTTAAAAAAATCCAAGAATCTAGGTCGTGGCATAAAAATCCAAAATTTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTAGGTTGTAAAAATTTGAAAATCTGAAAATCTAAGTAATGACCAAGAAAATTTGAAAATCTAGGTCATGATTTAAAAATCCAAAAACCTAGGTTATGATCGAAAAATCCAAAAACTGGGTCATGATTTAAAACACACAAAAATCTAGGTCATGACCTAAAAACTCGAAAATCTAGGTCGTGACCTAGAAAATCTAAAAAATCTAGGTCATGACCTAAAATCCAAAAATCTCCCGCTCTAAACGTGTATTGACTTCAGACACGAGCAATATGAGTATATTTGGAAGATAGGAAATCAAGATACACAACAATATATTTAGCAGAACTTCYCATAAATCTCAATAAAATTTATTACAGTTGGAATAGAAAAAGTTATATAGAAACAGAAAGCAATAAAAATGACATGAACTGAAAGTAGCAGAAAAAAAGGTGCTGAAAAACTAAAATGTTGAGATGTTGTGCCGTTTATTTTTATGAATTGATGGTTTGAATAACTGTCTATTTGCAACTGATCTACCATTCTTGAAAATTCATCCTCGGTTTTGTCTTTTTGTTAATACAGATGCCACACGATTATCTGATTCTCTAACGACGTATGAGTGGCTGACGATTGGATCAGTATTTGGCCTAAATGCTTGCTCAACGTACCTGAAAAGTACAACTTTTAAAAAATATCAAGAAGTAACTTACGCTCTAGGCACAGTGTGCGTTGGTGGCGTTTTTGTTGCGGCAATATGTCTTGCCCCAATTGCAGTCAGTAATTCGTCTCGAGGGATTCCCCCAAGAAGCAGTTTGATTTTTAGGTATTCTAGCTTTTGAAATGCGTTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTGGAAGATAGGAAATCAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAGAATGGTAGATCAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATTTGGAAGATAGGAAATCAAGATACACAACAATATATTTAGCAGAACTTCCCATAAATCTCAATAAAATTTATTACAGTTGGAATAGAAAAAGTTATATAGAAACAGAAAGCAATAAAAATGACATGAACTGAAAGTAGCAGAAAAAAAGGTGCTGAAAAACTAAAATGTTGAGATGTTGTGCCGTTTATTTTTATGAATTGATGGTTTGAATAACTGTCTATTTGCAACTGATCTACCATTCTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>TATTTGGAAGATAGGAAATCAAGATACACAACAATATATTTAGCAGAACTTCYCATAAATCTCAATAAAATTTATTACAGTTGGAATAGAAAAAGTTATATAGAAACAGAAAGCAATAAAAATGACATGAACTGAAAGTAGCAGAAAAAAAGGTGCTGAAAAACTAAAATGTTGAGATGTTGTGCCGTTTATTTTTATGAATTGATGGTTTGAATAACTGTCTATTTGCAACTGATCTACCATTCTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32290</snp_id>
        <super_contig>c007300658.Contig3</super_contig>
        <contig_pos>384269</contig_pos>
        <strand></strand>
        <context>CAGGACAATT[G/T]ATAATAAAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATCTGGAAAGATAATTGATTTTGGGTGAGTTATTAATAGCAGGACAATT</left_flank>
        <right_flank>ATAATAAAGTATCAATATTTCAGATCATCTGACGAATACTATTGTCCTGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTCAAGGTCATAACGTACACACAGTATTAGACTCTCTCAGTCTTCTGTATCTTTTGGGTCATCTGCCACGTCATAAGATGTCCCTCCTTGTGCTCCATCTTCTCTTACAACAGTGCATCGCTTTTCTGAACATCATTATTGTTCCTTTATAATCGTTCTATGATTCTCAGAACGACAAAAAATGAAATTATTGAAATATCCGAGTCTGGTCCAAAATCTGATACTTCACTACACAGTATGTTCCAATCTATTTCTGCTTTCACTACTCTCCAAAAAGATGAAGAAATTGATCAAATCGTCCCAAATGCCAAAATTCAAAATTTCACTTCTATCGTGTATGACAGTTGTGAACCAGATCAACCATTGGTTTACATTGCCTACAGACCATTTGCTATAATGAAATTTTCCGAGCACAAAGAGAATGAAAACGTTAAATTTCAATTGAGTATATCTGGAAAGATAATTGATTTTGGGTGAGTTATTAATAGCAGGACAATTGATAATAAAGTATCAATATTTCAGATCATCTGACGAATACTATTGTCCTGTGGCATTGTTTCATCCGCATGAACAAGAGTTAGTCATGGAATCTACTCATAATTATTTTCTTGATTTCTTCGGAACTTCTGTGAATTATAATTGGAGAACAAACAACTACAAGCTTTCTATTCCACGACTTCAAAACTTAGAAGTGCGCATTCGTATGGATATTCCGAGGATATTTCAGGACATGAAAAGCGTTGACAATTTTTTCTCCTCATGTCCTGTTTTGAAATCGATTGATCTGTATTTTTGGGCATTTGAATCGTTGAGCCCAGAATCGGAATCAATATTGTACCAAGCATAGTCTATCGAAATCAATCAGTTTGATCGAACGGTTCCGGCAGTTTTACAAAACTTTCAAGGAAGACAGGCATTTATGATGTGCTTTTTGTGCGAACCCTTAGATTTAATCGAGTTTGTAAATCGATGGAAATCGGGAAAAGCTATTCAAAATGT</canonical>
            <polymorphic>AGTCAAGGTCATAACGTACACACAGTATTAGACTCTCTCAGTCTTCTGTATCTTTTGGGTCATCTGCCACGTCATAAGATGTCCCTCCTTGTGCTCCATCTTCTCTTACAACAGTGCATCGCTTTTCTGAACATCATTATTGTTCCTTTATAATCGTTCTATGATTCTCAGAACGACAAAAAATGAAATTATTGAAATATCCGAGTCTGGTCCAAAATCTGATACTTCACTACACAGTATGTTCCAATCTATTTCTGCTTTCACTACTCTCCAAAAAGATGAAGAAATTGATCAAATCGTCCCAAATGCCAAAATTCAAAATTTCACTTCTATCGTGTATGACAGTTGTGAACCAGATCAACCATTGGTTTACATTGCCTACAGACCATTTGCTATAATGAAATTTTCCGAGCACAAAGAGAATGAAAACGTTAAATTTCAATTGAGTATATCTGGAAAGATAATTGATTTTGGGTGAGTTATTAATAGCAGGACAATTKATAATAAAGTATCAATATTTCAGATCATCTGACGAATACTATTGTCCTGTGGCATTGTTTCATCCGCATGAACAAGAGTTAGTCATGGAATCTACTCATAATTATTTTCTTGATTTCTTCGGAACTTCTGTGAATTATAATTGGAGAACAAACAACTACAAGCTTTCTATTCCACGACTTCAAAACTTAGAAGTGCGCATTCGTATGGATATTCCGAGGATATTTCAGGACATGAAAAGCGTTGACAATTTTTTCTCCTCATGTCCTGTTTTGAAATCGATTGATCTGTATTTTTGGGCATTTGAATCGTTGAGCCCAGAATCGGAATCAATATTGTACCAAGCATAGTCTATCGAAATCAATCAGTTTGATCGAACGGTTCCGGCAGTTTTACAAAACTTTCAAGGAAGACAGGCATTTATGATGTGCTTTTTGTGCGAACCCTTAGATTTAATCGAGTTTGTAAATCGATGGAAATCGGGAAAAGCTATTCAAAATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>505 440 55</canonical_bands>
                <polymorphic_bands>560 440</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAGAGAATGAAAACGTTAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGCTTGTAGTTGTTTGTTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAGAGAATGAAAACGTTAAATTTCAATTGAGTATATCTGGAAAGATAATTGATTTTGGGTGAGTTATTAATAGCAGGACAATTGATAATAAAGTATCAATATTTCAGATCATCTGACGAATACTATTGTCCTGTGGCATTGTTTCATCCGCATGAACAAGAGTTAGTCATGGAATCTACTCATAATTATTTTCTTGATTTCTTCGGAACTTCTGTGAATTATAATTGGAGAACAAACAACTACAAGCT</canonical_amplicon>
		<polymorphic_amplicon>CAAAGAGAATGAAAACGTTAAATTTCAATTGAGTATATCTGGAAAGATAATTGATTTTGGGTGAGTTATTAATAGCAGGACAATTKATAATAAAGTATCAATATTTCAGATCATCTGACGAATACTATTGTCCTGTGGCATTGTTTCATCCGCATGAACAAGAGTTAGTCATGGAATCTACTCATAATTATTTTCTTGATTTCTTCGGAACTTCTGTGAATTATAATTGGAGAACAAACAACTACAAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32291</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>15301</contig_pos>
        <strand>+</strand>
        <context>ATCATTCATR[A/G]CTTGAAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAAGCGAGTGCGAGTGCTCGGCAGTGCCACTTGAGCAGAATCATTCATG</left_flank>
        <right_flank>CTTGAAAATTACAATTGTTTCAACGAGTTAAAAATTTATTTATAACAAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTCTTGTGCCTGGCTTCAATCCACTTGTCCAAAAAGACGCAGCCGGAAAAGAGTGTCGCGGAAACGTGGAATTACCGTTTTGCAAGGGATACTGTAAGACTAGTGAGGTACGAACTCACAGGGTGCCAACTGCTGCGGTATGCTGTTGCGCTTTAATGAGAAGATGACAAGGCAAAGTAGGCCGTTGAAAATTCAAATTTCTTGCAATTTTCAGCCTTGTCAATAGAGCACAGCTGCATACAACAGCAGTTCGAACTCATTATCAGTGGAGCGCACTTATCTCCATGAAATTCAAAATTCTGAGTTTCAGAGCGGCACTCATGGCTTCCCCCCACGTGTCCAAATCAGCAAAGTCTGTACTCTGGTGCAGACATCAATTCGAAAAGTGATTCTGGACGATTGTGATGAAGGAGCCGCTGAGAGCATCAAGTTCGTCAATGTGCCCCATGGAAGCGAGTGCGAGTGCTCGGCAGTGCCACTTGAGCAGAATCATTCATGACTTGAAAATTACAATTGTTTCAACGAGTTAAAAATTTATTTATAACAAGCGATTTCTTATGCTTCTTTTACACAGAGAGAATGTTTTTCACAGGAATGTTAAATTTCATAATGTTAATCGGTTAGATGTGTCAAGTTCATGGTTTCGTTCTTCCAGTCATTCGCATCTTCTTCGCCTCCACCACTTGAGGACTCGGTGATCGCGAGCGACTCGTGCTCATCTGAAATTCAAAATTTCTTATGAAAAGTTGAAAAAAGCTAGAAAACCAACCACTTTCTTCGAGATGAGACACGTTTTGCAGTGGTACACAAAGCTCGGTTCGGACGCTTCTTCAACGGAAACGGGCGGCACACTGCATCGCATGTGGAAGCAATCACGGCAGTTTTTACAGGCGAGCACTTGGTTTCCGGCTTGTGAGACACCGCCACATGTTTTGCATGGCTGAAAAATCGATTGAGAATTGATGAGCGTCGCCAGGGCGCCGCGGAAGGGAGCCTCAA</canonical>
            <polymorphic>CGTCTTGTGCCTGGCTTCAATCCACTTGTCCAAAAAGACGCAGCCGGAAAAGAGTGTCGCGGAAACGTGGAATTACCGTTTTGCAAGGGATACTGTAAGACTAGTGAGGTACGAACTCACAGGGTGCCAACTGCTGCGGTATGCTGTTGCGCTTTAATGAGAAGATGACAAGGCAAAGTAGGCCGTTGAAAATTCAAATTTCTTGCAATTTTCAGCCTTGTCAATAGAGCACAGCTGCATACAACAGCAGTTCGAACTCATTATCAGTGGAGCGCACTTATCTCCATGAAATTCAAAATTCTGAGTTTCAGAGCGGCACTCATGGCTTCCCCCCACGTGTCCAAATCAGCAAAGTCTGTACTCTGGTGCAGACATCAATTCGAAAAGTGATTCTGGACGATTGTGATGAAGGAGCCGCTGAGAGCATCAAGTTCGTCAATGTGCCCCATGGAAGCGAGTGCGAGTGCTCGGCAGTGCCACTTGAGCAGAATCATTCATGRCTTGAAAATTACAATTGTTTCAACGAGTTAAAAATTTATTTATAACAAGCGATTTCTTATGCTTCTTTTACACAGAGAGAATGTTTTTCACAGGAATGTTAAATTTCATAATGTTAATCGGTTAGATGTGTCAAGTTCATGGTTTCGTTCTTCCAGTCATTCGCATCTTCTTCGCCTCCACCACTTGAGGACTCGGTGATCGCGAGCGACTCGTGCTCATCTGAAATTCAAAATTTCTTATGAAAAGTTGAAAAAAGCTAGAAAACCAACCACTTTCTTCGAGATGAGACACGTTTTGCAGTGGTACACAAAGCTCGGTTCGGACGCTTCTTCAACGGAAACGGGCGGCACACTGCATCGCATGTGGAAGCAATCACGGCAGTTTTTACAGGCGAGCACTTGGTTTCCGGCTTGTGAGACACCGCCACATGTTTTGCATGGCTGAAAAATCGATTGAGAATTGATGAGCGTCGCCAGGGCGCCGCGGAAGGGAGCCTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>393 220 205 103 79</canonical_bands>
                <polymorphic_bands>393 308 220 79</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATCAGCAAAGTCTGTACTCT</pcr_primer_p1>
		<pcr_primer_p2>GTGAAAAACATTCTCTCTGTGTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAATCAGCAAAGTCTGTACTCTGGTGCAGACATCAATTCGAAAAGTGATTCTGGACGATTGTGATGAAGGAGCCGCTGAGAGCATCAAGTTCGTCAATGTGCCCCATGGAAGCGAGTGCGAGTGCTCGGCAGTGCCACTTGAGCAGAATCATTCATGACTTGAAAATTACAATTGTTTCAACGAGTTAAAAATTTATTTATAACAAGCGATTTCTTATGCTTCTTTTACACAGAGAGAATGTTTTTCAC</canonical_amplicon>
		<polymorphic_amplicon>CAAATCAGCAAAGTCTGTACTCTGGTGCAGACATCAATTCGAAAAGTGATTCTGGACGATTGTGATGAAGGAGCCGCTGAGAGCATCAAGTTCGTCAATGTGCCCCATGGAAGCGAGTGCGAGTGCTCGGCAGTGCCACTTGAGCAGAATCATTCATGRCTTGAAAATTACAATTGTTTCAACGAGTTAAAAATTTATTTATAACAAGCGATTTCTTATGCTTCTTTTACACAGAGAGAATGTTTTTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32292</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>18119</contig_pos>
        <strand>+</strand>
        <context>ACTATTTTTG[A/C]RAAAAAATCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCAAAATCCGAAATTATAGATGATTTTGAATCGAAAAATCACTATTTTTG</left_flank>
        <right_flank>GAAAAAATCCAAAGTATTGCCTCAAAATCAACTGAATTTGTGGCATTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAGGCTCGATTTGATATTAGCAGGCGGAATTGTCGTGATAGCATCTGGAAAAAAAGAGGGAGCTGGTGGGCGTGGCCAAAGGTCCCACAACGACAACTACAGTAACCCAAAAATATGTTTTTTCAGAATTTTTTTCACTGCTGTGACGACCAAGAAAAATTTGAAGCTTAAAAAATCAGAAATTTGGATATTTTGAGTCCAAAAAATCACTAATTAAAAAAAAATTAGGAAAAATCCCAATTTTCTCAAAATCAACCGAATTAGGGTAAATTTCAGCCAAAAAATCTTTTAAAAAGGCAATTTTTGCCTCAAAATTCCTAATTTTGACTAGAAAAAAACACAAATTTTTGAAAAAAATTAATACAAAAAATCCTAATTATTGCCTCAAAATCAGCCGAATTTGGGTCGGTTTCAGCTGAAAAATAGTTAAAAAATGTCTTTTTTGACTCAAAATCCGAAATTATAGATGATTTTGAATCGAAAAATCACTATTTTTGAGAAAAAATCCAAAGTATTGCCTCAAAATCAACTGAATTTGTGGCATTTTCAGCCAAAAATATTTTAAAAAGGCTATTTTTGGGCTCAAAATTCCAGATTTTCTATAGCAAAAAAAAAGGCAAGTTTTTAAGGAAAAAATGAGAAAAAAAGGAAAAAAAAATACTTTAGGTTACTGTAGCTGTCCTTGTGAGACCCAGAATAATAGGAAAAAAAATCGAGATAATAATAATCTGTTCAGGAACAGAAATCAGGTTTAGAAGGAAAGTTTCAAAAAGAAATTCAAAGAAAAATATATTATTTTGAACAAAAATATATCAAAGGAACAAAAAAGCAAAACAAGAAACAAAGGATCTTCTACGATCTCTACCAAAAAAATCTGAAAATCTAATCCAAAAAATATATTTTCCTCTTATTTCCCTCTTTGCTGCAAACGCTTCCTCTCGTCCTGCCCCTTTCGAATCGCTTCCTTGAACATTCTCAATAGGTATTCTGTGGATTGC</canonical>
            <polymorphic>AGAAGGCTCGATTTGATATTAGCAGGCGGAATTGTCGTGATAGCATCTGGAAAAAAAGAGGGAGCTGGTGGGCGTGGCCAAAGGTCCCACAACGACAACTACAGTAACCCAAAAATATGTTTTTTCAGAATTTTTTTCACTGCTGTGACGACCAAGAAAAATTTGAAGCTTAAAAAATCAGAAATTTGGATATTTTGAGTCCAAAAAATCACTAATTAAAAAAAAATTAGGAAAAATCCCAATTTTCTCAAAATCAACCGAATTAGGGTAAATTTCAGCCAAAAAATCTTTTAAAAAGGCAATTTTTGCCTCAAAATTCCTAATTTTGACTAGAAAAAAACACAAATTTTTGAAAAAAATTAATACAAAAAATCCTAATTATTGCCTCAAAATCAGCCGAATTTGGGTCGGTTTCAGCTGAAAAATAGTTAAAAAATGTCTTTTTTGACTCAAAATCCGAAATTATAGATGATTTTGAATCGAAAAATCACTATTTTTGMGAAAAAATCCAAAGTATTGCCTCAAAATCAACTGAATTTGTGGCATTTTCAGCCAAAAATATTTTAAAAAGGCTATTTTTGGGCTCAAAATTCCAGATTTTCTATAGCAAAAAAAAAGGCAAGTTTTTAAGGAAAAAATGAGAAAAAAAGGAAAAAAAAATACTTTAGGTTACTGTAGCTGTCCTTGTGAGACCCAGAATAATAGGAAAAAAAATCGAGATAATAATAATCTGTTCAGGAACAGAAATCAGGTTTAGAAGGAAAGTTTCAAAAAGAAATTCAAAGAAAAATATATTATTTTGAACAAAAATATATCAAAGGAACAAAAAAGCAAAACAAGAAACAAAGGATCTTCTACGATCTCTACCAAAAAAATCTGAAAATCTAATCCAAAAAATATATTTTCCTCTTATTTCCCTCTTTGCTGCAAACGCTTCCTCTCGTCCTGCCCCTTTCGAATCGCTTCCTTGAACATTCTCAATAGGTATTCTGTGGATTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTCAAAATCCGAAATTATAGA</pcr_primer_p1>
		<pcr_primer_p2>TTCTAAACCTGATTTCTGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>313</pcr_amplicon_size>
		<canonical_amplicon>GACTCAAAATCCGAAATTATAGATGATTTTGAATCGAAAAATCACTATTTTTGAGAAAAAATCCAAAGTATTGCCTCAAAATCAACTGAATTTGTGGCATTTTCAGCCAAAAATATTTTAAAAAGGCTATTTTTGGGCTCAAAATTCCAGATTTTCTATAGCAAAAAAAAAGGCAAGTTTTTAAGGAAAAAATGAGAAAAAAAGGAAAAAAAAATACTTTAGGTTACTGTAGCTGTCCTTGTGAGACCCAGAATAATAGGAAAAAAAATCGAGATAATAATAATCTGTTCAGGAACAGAAATCAGGTTTAGAA</canonical_amplicon>
		<polymorphic_amplicon>GACTCAAAATCCGAAATTATAGATGATTTTGAATCGAAAAATCACTATTTTTGMGAAAAAATCCAAAGTATTGCCTCAAAATCAACTGAATTTGTGGCATTTTCAGCCAAAAATATTTTAAAAAGGCTATTTTTGGGCTCAAAATTCCAGATTTTCTATAGCAAAAAAAAAGGCAAGTTTTTAAGGAAAAAATGAGAAAAAAAGGAAAAAAAAATACTTTAGGTTACTGTAGCTGTCCTTGTGAGACCCAGAATAATAGGAAAAAAAATCGAGATAATAATAATCTGTTCAGGAACAGAAATCAGGTTTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32293</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>18326</contig_pos>
        <strand>+</strand>
        <context>gaataatagg[A/T]aaaaaaatcg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATACTTTAGGTTACTGTAGCTGTCCTTGTGAGACCCAGAATAATAGG</left_flank>
        <right_flank>AAAAAAATCGAGATAATAATAATCTGTTCAGGAACAGAAATCAGGTTTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCACTAATTAAAAAAAAATTAGGAAAAATCCCAATTTTCTCAAAATCAACCGAATTAGGGTAAATTTCAGCCAAAAAATCTTTTAAAAAGGCAATTTTTGCCTCAAAATTCCTAATTTTGACTAGAAAAAAACACAAATTTTTGAAAAAAATTAATACAAAAAATCCTAATTATTGCCTCAAAATCAGCCGAATTTGGGTCGGTTTCAGCTGAAAAATAGTTAAAAAATGTCTTTTTTGACTCAAAATCCGAAATTATAGATGATTTTGAATCGAAAAATCACTATTTTTGAGAAAAAATCCAAAGTATTGCCTCAAAATCAACTGAATTTGTGGCATTTTCAGCCAAAAATATTTTAAAAAGGCTATTTTTGGGCTCAAAATTCCAGATTTTCTATAGCAAAAAAAAAGGCAAGTTTTTAAGGAAAAAATGAGAAAAAAAGGAAAAAAAAATACTTTAGGTTACTGTAGCTGTCCTTGTGAGACCCAGAATAATAGGAAAAAAAATCGAGATAATAATAATCTGTTCAGGAACAGAAATCAGGTTTAGAAGGAAAGTTTCAAAAAGAAATTCAAAGAAAAATATATTATTTTGAACAAAAATATATCAAAGGAACAAAAAAGCAAAACAAGAAACAAAGGATCTTCTACGATCTCTACCAAAAAAATCTGAAAATCTAATCCAAAAAATATATTTTCCTCTTATTTCCCTCTTTGCTGCAAACGCTTCCTCTCGTCCTGCCCCTTTCGAATCGCTTCCTTGAACATTCTCAATAGGTATTCTGTGGATTGCGGGGTGTCGTCGTTGGCTGGAATCAAGTATGTCAGATAGGCGGGATCCGAGTTCGAGTCGACCACTCCGATCGTCGGAATCGTCATTTTCGCGGCTTCGATGATTGCCGGATGGTTTTCACCGAGTGATGTGAGAGTCGACAGGAAGAATACCGCATCAGGGAGTCGAACGGAGGCACCCAGAAGCTGGCGAGTGTTGGTTAGCGTT</canonical>
            <polymorphic>ATCACTAATTAAAAAAAAATTAGGAAAAATCCCAATTTTCTCAAAATCAACCGAATTAGGGTAAATTTCAGCCAAAAAATCTTTTAAAAAGGCAATTTTTGCCTCAAAATTCCTAATTTTGACTAGAAAAAAACACAAATTTTTGAAAAAAATTAATACAAAAAATCCTAATTATTGCCTCAAAATCAGCCGAATTTGGGTCGGTTTCAGCTGAAAAATAGTTAAAAAATGTCTTTTTTGACTCAAAATCCGAAATTATAGATGATTTTGAATCGAAAAATCACTATTTTTGAGAAAAAATCCAAAGTATTGCCTCAAAATCAACTGAATTTGTGGCATTTTCAGCCAAAAATATTTTAAAAAGGCTATTTTTGGGCTCAAAATTCCAGATTTTCTATAGCAAAAAAAAAGGCAAGTTTTTAAGGAAAAAATGAGAAAAAAAGGAAAAAAAAATACTTTAGGTTACTGTAGCTGTCCTTGTGAGACCCAGAATAATAGGWAAAAAAATCGAGATAATAATAATCTGTTCAGGAACAGAAATCAGGTTTAGAAGGAAAGTTTCAAAAAGAAATTCAAAGAAAAATATATTATTTTGAACAAAAATATATCAAAGGAACAAAAAAGCAAAACAAGAAACAAAGGATCTTCTACGATCTCTACCAAAAAAATCTGAAAATCTAATCCAAAAAATATATTTTCCTCTTATTTCCCTCTTTGCTGCAAACGCTTCCTCTCGTCCTGCCCCTTTCGAATCGCTTCCTTGAACATTCTCAATAGGTATTCTGTGGATTGCGGGGTGTCGTCGTTGGCTGGAATCAAGTATGTCAGATAGGCGGGATCCGAGTTCGAGTCGACCACTCCGATCGTCGGAATCGTCATTTTCGCGGCTTCGATGATTGCCGGATGGTTTTCACCGAGTGATGTGAGAGTCGACAGGAAGAATACCGCATCAGGGAGTCGAACGGAGGCACCCAGAAGCTGGCGAGTGTTGGTTAGCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCAAAATTCCAGATTTTCTAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTTCCTTTGATATATTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GCTCAAAATTCCAGATTTTCTATAGCAAAAAAAAAGGCAAGTTTTTAAGGAAAAAATGAGAAAAAAAGGAAAAAAAAATACTTTAGGTTACTGTAGCTGTCCTTGTGAGACCCAGAATAATAGGAAAAAAAATCGAGATAATAATAATCTGTTCAGGAACAGAAATCAGGTTTAGAAGGAAAGTTTCAAAAAGAAATTCAAAGAAAAATATATTATTTTGAACAAAAATATATCAAAGGAACAAAA</canonical_amplicon>
		<polymorphic_amplicon>GCTCAAAATTCCAGATTTTCTATAGCAAAAAAAAAGGCAAGTTTTTAAGGAAAAAATGAGAAAAAAAGGAAAAAAAAATACTTTAGGTTACTGTAGCTGTCCTTGTGAGACCCAGAATAATAGGWAAAAAAATCGAGATAATAATAATCTGTTCAGGAACAGAAATCAGGTTTAGAAGGAAAGTTTCAAAAAGAAATTCAAAGAAAAATATATTATTTTGAACAAAAATATATCAAAGGAACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32294</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>56419</contig_pos>
        <strand></strand>
        <context>gagttattat[C/T]tcggtagcta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAACAAGAAGAGACCATCTTGGGTGCCAAGACCAGATGTGAGTTATTAT</left_flank>
        <right_flank>TCGGTAGCTATAAGCGATATCAAAAATGTGTCAACTGATACAATGTTGGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTAGAAGAATCCTAATTCAATGCTTTTAGAACCTCTCCGCGAGAAAGATTCCATTGTCAGTGTGGCTAGCACGTCTACAGCTCCACCTGGCCATCTACCAAGCACTCCACTTGCCTCCCCGACGCTTTCAGAAGAGCCTCTTCTGGACCAACATCCCGAATGGATTCAGAATCCAAAAGCGACCCGATTTCTTGTCGGTTTACTGACAAGTATGTATGTATTGCTACTCACTATTGTGTCCTGCCTTATCTCCTTATCATCCGCATGGCAATCACCTGATCTATGGCTAGCGGAGACGGTAGATAGAAAGCTCTAGAACGATCTTTTACTGATTATTGATTTTCAGATATTCTCACTTTTGATGTACGGTATTGCCATACTATTTTTCATTTACACTTATTTTATGGTAATCTATCCAAAGCCAATCAACGCTTTGATCATGTTTCTGAACAAGAAGAGACCATCTTGGGTGCCAAGACCAGATGTGAGTTATTATCTCGGTAGCTATAAGCGATATCAAAAATGTGTCAACTGATACAATGTTGGTGATAATATGATAAACATTTTATTAGTTTAAAAATTTTTGATATCTTTCATAGGAACCGAGATAATTGAGCTTAAACCCCTCTCCCTTTCTTCTCATAGCCCGCCCAAACAGTTAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAACATTTGTCAACTATTAAAATATTGGTGATTATATGGTAAACATTTTATTGGTTCGCAAATTTTTTAAATCAATGAATGCACTACCGTAAGCGCATACGTACACTTTGAGCTTAATTACCTCGGTTCTTATAAGAGATATCAAAATTTTGTTAACTGATAAAATGTTGGTGATAACAGGATAATTAATTCATCAGTTAACTGTTTTTTGGTATCTCTTATGGGAACCGAGATAATAGAGGTAAAAATTTAGAGATGGCTCATCCCGCCACCGTTACATAATGGAGAAGGTGCTGG</canonical>
            <polymorphic>ATTCTAGAAGAATCCTAATTCAATGCTTTTAGAACCTCTCCGCGAGAAAGATTCCATTGTCAGTGTGGCTAGCACGTCTACAGCTCCACCTGGCCATCTACCAAGCACTCCACTTGCCTCCCCGACGCTTTCAGAAGAGCCTCTTCTGGACCAACATCCCGAATGGATTCAGAATCCAAAAGCGACCCGATTTCTTGTCGGTTTACTGACAAGTATGTATGTATTGCTACTCACTATTGTGTCCTGCCTTATCTCCTTATCATCCGCATGGCAATCACCTGATCTATGGCTAGCGGAGACGGTAGATAGAAAGCTCTAGAACGATCTTTTACTGATTATTGATTTTCAGATATTCTCACTTTTGATGTACGGTATTGCCATACTATTTTTCATTTACACTTATTTTATGGTAATCTATCCAAAGCCAATCAACGCTTTGATCATGTTTCTGAACAAGAAGAGACCATCTTGGGTGCCAAGACCAGATGTGAGTTATTATYTCGGTAGCTATAAGCGATATCAAAAATGTGTCAACTGATACAATGTTGGTGATAATATGATAAACATTTTATTAGTTTAAAAATTTTTGATATCTTTCATAGGAACCGAGATAATTGAGCTTAAACCCCTCTCCCTTTCTTCTCATAGCCCGCCCAAACAGTTAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAACATTTGTCAACTATTAAAATATTGGTGATTATATGGTAAACATTTTATTGGTTCGCAAATTTTTTAAATCAATGAATGCACTACCGTAAGCGCATACGTACACTTTGAGCTTAATTACCTCGGTTCTTATAAGAGATATCAAAATTTTGTTAACTGATAAAATGTTGGTGATAACAGGATAATTAATTCATCAGTTAACTGTTTTTTGGTATCTCTTATGGGAACCGAGATAATAGAGGTAAAAATTTAGAGATGGCTCATCCCGCCACCGTTACATAATGGAGAAGGTGCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCATGTTTCTGAACAAGAAGAG</pcr_primer_p1>
		<pcr_primer_p2>AGCCATCTCTAAATTTTTACCTC</pcr_primer_p2>
		<pcr_amplicon_size>525</pcr_amplicon_size>
		<canonical_amplicon>ATCATGTTTCTGAACAAGAAGAGACCATCTTGGGTGCCAAGACCAGATGTGAGTTATTATCTCGGTAGCTATAAGCGATATCAAAAATGTGTCAACTGATACAATGTTGGTGATAATATGATAAACATTTTATTAGTTTAAAAATTTTTGATATCTTTCATAGGAACCGAGATAATTGAGCTTAAACCCCTCTCCCTTTCTTCTCATAGCCCGCCCAAACAGTTAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAACATTTGTCAACTATTAAAATATTGGTGATTATATGGTAAACATTTTATTGGTTCGCAAATTTTTTAAATCAATGAATGCACTACCGTAAGCGCATACGTACACTTTGAGCTTAATTACCTCGGTTCTTATAAGAGATATCAAAATTTTGTTAACTGATAAAATGTTGGTGATAACAGGATAATTAATTCATCAGTTAACTGTTTTTTGGTATCTCTTATGGGAACCGAGATAATAGAGGTAAAAATTTAGAGATGGCT</canonical_amplicon>
		<polymorphic_amplicon>ATCATGTTTCTGAACAAGAAGAGACCATCTTGGGTGCCAAGACCAGATGTGAGTTATTATYTCGGTAGCTATAAGCGATATCAAAAATGTGTCAACTGATACAATGTTGGTGATAATATGATAAACATTTTATTAGTTTAAAAATTTTTGATATCTTTCATAGGAACCGAGATAATTGAGCTTAAACCCCTCTCCCTTTCTTCTCATAGCCCGCCCAAACAGTTAACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATATCAAACATTTGTCAACTATTAAAATATTGGTGATTATATGGTAAACATTTTATTGGTTCGCAAATTTTTTAAATCAATGAATGCACTACCGTAAGCGCATACGTACACTTTGAGCTTAATTACCTCGGTTCTTATAAGAGATATCAAAATTTTGTTAACTGATAAAATGTTGGTGATAACAGGATAATTAATTCATCAGTTAACTGTTTTTTGGTATCTCTTATGGGAACCGAGATAATAGAGGTAAAAATTTAGAGATGGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32295</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>76389</contig_pos>
        <strand>+</strand>
        <context>CTTGAGCGAT[C/T]TCACGGACAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGACAGCGGATGATTGGAAGCGAAGGTCAGTCTTGAAATCTTGAGCGAT</left_flank>
        <right_flank>TCACGGACAAGTCGCTGGAATGGCAACTTGCGGATGAGGAGCTCAGTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATTGCCGCCAAAACTGATGTTGATTAGCAAACGAAACACATTGATAACACAAATTCTTGATAAGAACCTCCCATCTGTACAAACATGAAGAGCTGCATACGCTCTTTGTACAACGATTTGAATTTAAAATTGGCTTTGAATTTTGATGATGAATAGTAAAAAATGAAATAGGGTTAATACAGAGCAATTATTTATTTGATAAACAACAAATAAGGGATTTTGGATATTTGTGGCCCTAAAGAGGGCCGTTTGGTTCGGTTGAGTTGGTTCAGTGAATCGAAACGGTCTCAAAATCCAAAACTGGAAATTTAAGCACGCTCTCCTCGGATACGTCTGGCCAATTGGATGTCCTTTGGCATGATGGTGACTCGCTTGGCGTGGATGGCGCACAAGTTGGTGTCCTCGAAAAGTCCGACGAGGTAAGCCTCAGCGGACTCTTGAAGAGCCATGACAGCGGATGATTGGAAGCGAAGGTCAGTCTTGAAATCTTGAGCGATTTCACGGACAAGTCGCTGGAATGGCAACTTGCGGATGAGGAGCTCAGTCGACTTCTGGTAACGTCTGATCTCACGAAGAGCGACGGTTCCTGGACGGTAACGATGTGGCTTCTTGACTCCTCCTTGAGCTGGAGCAGACTTGCGAGCAGCCTTGGTGGCCAACTGCTTTCTTGGAGCCTTTCCTCCGGTCGATTTGCGGGCGGTTTGCTTGGTACGAGCCATTTCAATTGGAATCCGATTGGGACTGTGAAGGAAACGGACGAAGGGAGGAGGGTTATAAGATAGGGTGCGGTGGAGGGGTGGAGACTCGGAATAGGAGAGGGATGGGGAGAATCAGACGGAATGAGTGTAATGTGTCCCCGCAGATGCGACTCCTCCTACTCACCGCAGACATTCACGATTCCGTATATAAGACGGTAGGAAACAGTCAGCAGCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCC</canonical>
            <polymorphic>ATATTGCCGCCAAAACTGATGTTGATTAGCAAACGAAACACATTGATAACACAAATTCTTGATAAGAACCTCCCATCTGTACAAACATGAAGAGCTGCATACGCTCTTTGTACAACGATTTGAATTTAAAATTGGCTTTGAATTTTGATGATGAATAGTAAAAAATGAAATAGGGTTAATACAGAGCAATTATTTATTTGATAAACAACAAATAAGGGATTTTGGATATTTGTGGCCCTAAAGAGGGCCGTTTGGTTCGGTTGAGTTGGTTCAGTGAATCGAAACGGTCTCAAAATCCAAAACTGGAAATTTAAGCACGCTCTCCTCGGATACGTCTGGCCAATTGGATGTCCTTTGGCATGATGGTGACTCGCTTGGCGTGGATGGCGCACAAGTTGGTGTCCTCGAAAAGTCCGACGAGGTAAGCCTCAGCGGACTCTTGAAGAGCCATGACAGCGGATGATTGGAAGCGAAGGTCAGTCTTGAAATCTTGAGCGATYTCACGGACAAGTCGCTGGAATGGCAACTTGCGGATGAGGAGCTCAGTCGACTTCTGGTAACGTCTGATCTCACGAAGAGCGACGGTTCCTGGACGGTAACGATGTGGCTTCTTGACTCCTCCTTGAGCTGGAGCAGACTTGCGAGCAGCCTTGGTGGCCAACTGCTTTCTTGGAGCCTTTCCTCCGGTCGATTTGCGGGCGGTTTGCTTGGTACGAGCCATTTCAATTGGAATCCGATTGGGACTGTGAAGGAAACGGACGAAGGGAGGAGGGTTATAAGATAGGGTGCGGTGGAGGGGTGGAGACTCGGAATAGGAGAGGGATGGGGAGAATCAGACGGAATGAGTGTAATGTGTCCCCGCAGATGCGACTCCTCCTACTCACCGCAGACATTCACGATTCCGTATATAAGACGGTAGGAAACAGTCAGCAGCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTAAGCACGCTCTCCT</pcr_primer_p1>
		<pcr_primer_p2>AGATCAGACGTTACCAGAAGTC</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>AAATTTAAGCACGCTCTCCTCGGATACGTCTGGCCAATTGGATGTCCTTTGGCATGATGGTGACTCGCTTGGCGTGGATGGCGCACAAGTTGGTGTCCTCGAAAAGTCCGACGAGGTAAGCCTCAGCGGACTCTTGAAGAGCCATGACAGCGGATGATTGGAAGCGAAGGTCAGTCTTGAAATCTTGAGCGATTTCACGGACAAGTCGCTGGAATGGCAACTTGCGGATGAGGAGCTCAGTCGACTTCTGGTAACGTCTGATCT</canonical_amplicon>
		<polymorphic_amplicon>AAATTTAAGCACGCTCTCCTCGGATACGTCTGGCCAATTGGATGTCCTTTGGCATGATGGTGACTCGCTTGGCGTGGATGGCGCACAAGTTGGTGTCCTCGAAAAGTCCGACGAGGTAAGCCTCAGCGGACTCTTGAAGAGCCATGACAGCGGATGATTGGAAGCGAAGGTCAGTCTTGAAATCTTGAGCGATYTCACGGACAAGTCGCTGGAATGGCAACTTGCGGATGAGGAGCTCAGTCGACTTCTGGTAACGTCTGATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32296</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>76503</contig_pos>
        <strand>+</strand>
        <context>GTGGCTTCTT[A/G]ACTCCTCCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGATCTCACGAAGAGCGACGGTTCCTGGACGGTAACGATGTGGCTTCTT</left_flank>
        <right_flank>ACTCCTCCTTGAGCTGGAGCAGACTTGCGAGCAGCCTTGGTGGCCAACTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGATTTGAATTTAAAATTGGCTTTGAATTTTGATGATGAATAGTAAAAAATGAAATAGGGTTAATACAGAGCAATTATTTATTTGATAAACAACAAATAAGGGATTTTGGATATTTGTGGCCCTAAAGAGGGCCGTTTGGTTCGGTTGAGTTGGTTCAGTGAATCGAAACGGTCTCAAAATCCAAAACTGGAAATTTAAGCACGCTCTCCTCGGATACGTCTGGCCAATTGGATGTCCTTTGGCATGATGGTGACTCGCTTGGCGTGGATGGCGCACAAGTTGGTGTCCTCGAAAAGTCCGACGAGGTAAGCCTCAGCGGACTCTTGAAGAGCCATGACAGCGGATGATTGGAAGCGAAGGTCAGTCTTGAAATCTTGAGCGATTTCACGGACAAGTCGCTGGAATGGCAACTTGCGGATGAGGAGCTCAGTCGACTTCTGGTAACGTCTGATCTCACGAAGAGCGACGGTTCCTGGACGGTAACGATGTGGCTTCTTGACTCCTCCTTGAGCTGGAGCAGACTTGCGAGCAGCCTTGGTGGCCAACTGCTTTCTTGGAGCCTTTCCTCCGGTCGATTTGCGGGCGGTTTGCTTGGTACGAGCCATTTCAATTGGAATCCGATTGGGACTGTGAAGGAAACGGACGAAGGGAGGAGGGTTATAAGATAGGGTGCGGTGGAGGGGTGGAGACTCGGAATAGGAGAGGGATGGGGAGAATCAGACGGAATGAGTGTAATGTGTCCCCGCAGATGCGACTCCTCCTACTCACCGCAGACATTCACGATTCCGTATATAAGACGGTAGGAAACAGTCAGCAGCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAGGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACGAAGCCAGCCATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCCG</canonical>
            <polymorphic>ACGATTTGAATTTAAAATTGGCTTTGAATTTTGATGATGAATAGTAAAAAATGAAATAGGGTTAATACAGAGCAATTATTTATTTGATAAACAACAAATAAGGGATTTTGGATATTTGTGGCCCTAAAGAGGGCCGTTTGGTTCGGTTGAGTTGGTTCAGTGAATCGAAACGGTCTCAAAATCCAAAACTGGAAATTTAAGCACGCTCTCCTCGGATACGTCTGGCCAATTGGATGTCCTTTGGCATGATGGTGACTCGCTTGGCGTGGATGGCGCACAAGTTGGTGTCCTCGAAAAGTCCGACGAGGTAAGCCTCAGCGGACTCTTGAAGAGCCATGACAGCGGATGATTGGAAGCGAAGGTCAGTCTTGAAATCTTGAGCGATTTCACGGACAAGTCGCTGGAATGGCAACTTGCGGATGAGGAGCTCAGTCGACTTCTGGTAACGTCTGATCTCACGAAGAGCGACGGTTCCTGGACGGTAACGATGTGGCTTCTTRACTCCTCCTTGAGCTGGAGCAGACTTGCGAGCAGCCTTGGTGGCCAACTGCTTTCTTGGAGCCTTTCCTCCGGTCGATTTGCGGGCGGTTTGCTTGGTACGAGCCATTTCAATTGGAATCCGATTGGGACTGTGAAGGAAACGGACGAAGGGAGGAGGGTTATAAGATAGGGTGCGGTGGAGGGGTGGAGACTCGGAATAGGAGAGGGATGGGGAGAATCAGACGGAATGAGTGTAATGTGTCCCCGCAGATGCGACTCCTCCTACTCACCGCAGACATTCACGATTCCGTATATAAGACGGTAGGAAACAGTCAGCAGCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAGGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACGAAGCCAGCCATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>179 162 116 109 92 74 67 48 42 39 29 26 17</canonical_bands>
                <polymorphic_bands>295 162 109 92 74 67 48 42 39 29 26 17</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>325 284 81 79 65 55 43 40 20 8</canonical_bands>
                <polymorphic_bands>325 324 81 79 65 55 43 20 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTTCTGGTAACGTCTGATCT</pcr_primer_p1>
		<pcr_primer_p2>CACCCTATCTTATAACCCTCCT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GACTTCTGGTAACGTCTGATCTCACGAAGAGCGACGGTTCCTGGACGGTAACGATGTGGCTTCTTGACTCCTCCTTGAGCTGGAGCAGACTTGCGAGCAGCCTTGGTGGCCAACTGCTTTCTTGGAGCCTTTCCTCCGGTCGATTTGCGGGCGGTTTGCTTGGTACGAGCCATTTCAATTGGAATCCGATTGGGACTGTGAAGGAAACGGACGAAGGGAGGAGGGTTATAAGATAGGGTG</canonical_amplicon>
		<polymorphic_amplicon>GACTTCTGGTAACGTCTGATCTCACGAAGAGCGACGGTTCCTGGACGGTAACGATGTGGCTTCTTRACTCCTCCTTGAGCTGGAGCAGACTTGCGAGCAGCCTTGGTGGCCAACTGCTTTCTTGGAGCCTTTCCTCCGGTCGATTTGCGGGCGGTTTGCTTGGTACGAGCCATTTCAATTGGAATCCGATTGGGACTGTGAAGGAAACGGACGAAGGGAGGAGGGTTATAAGATAGGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32297</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>76618</contig_pos>
        <strand>+</strand>
        <context>CATTTCAATT[G/T]GAATCCGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCCTCCGGTCGATTTGCGGGCGGTTTGCTTGGTACGAGCCATTTCAATT</left_flank>
        <right_flank>GAATCCGATTGGGACTGTGAAGGAAACGGACGAAGGGAGGAGGGTTATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTGGCCCTAAAGAGGGCCGTTTGGTTCGGTTGAGTTGGTTCAGTGAATCGAAACGGTCTCAAAATCCAAAACTGGAAATTTAAGCACGCTCTCCTCGGATACGTCTGGCCAATTGGATGTCCTTTGGCATGATGGTGACTCGCTTGGCGTGGATGGCGCACAAGTTGGTGTCCTCGAAAAGTCCGACGAGGTAAGCCTCAGCGGACTCTTGAAGAGCCATGACAGCGGATGATTGGAAGCGAAGGTCAGTCTTGAAATCTTGAGCGATTTCACGGACAAGTCGCTGGAATGGCAACTTGCGGATGAGGAGCTCAGTCGACTTCTGGTAACGTCTGATCTCACGAAGAGCGACGGTTCCTGGACGGTAACGATGTGGCTTCTTGACTCCTCCTTGAGCTGGAGCAGACTTGCGAGCAGCCTTGGTGGCCAACTGCTTTCTTGGAGCCTTTCCTCCGGTCGATTTGCGGGCGGTTTGCTTGGTACGAGCCATTTCAATTGGAATCCGATTGGGACTGTGAAGGAAACGGACGAAGGGAGGAGGGTTATAAGATAGGGTGCGGTGGAGGGGTGGAGACTCGGAATAGGAGAGGGATGGGGAGAATCAGACGGAATGAGTGTAATGTGTCCCCGCAGATGCGACTCCTCCTACTCACCGCAGACATTCACGATTCCGTATATAAGACGGTAGGAAACAGTCAGCAGCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAGGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACGAAGCCAGCCATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCCGGACTCATCTACGAGGAGACTCGTGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACCGCCATGGACGT</canonical>
            <polymorphic>TTGTGGCCCTAAAGAGGGCCGTTTGGTTCGGTTGAGTTGGTTCAGTGAATCGAAACGGTCTCAAAATCCAAAACTGGAAATTTAAGCACGCTCTCCTCGGATACGTCTGGCCAATTGGATGTCCTTTGGCATGATGGTGACTCGCTTGGCGTGGATGGCGCACAAGTTGGTGTCCTCGAAAAGTCCGACGAGGTAAGCCTCAGCGGACTCTTGAAGAGCCATGACAGCGGATGATTGGAAGCGAAGGTCAGTCTTGAAATCTTGAGCGATTTCACGGACAAGTCGCTGGAATGGCAACTTGCGGATGAGGAGCTCAGTCGACTTCTGGTAACGTCTGATCTCACGAAGAGCGACGGTTCCTGGACGGTAACGATGTGGCTTCTTGACTCCTCCTTGAGCTGGAGCAGACTTGCGAGCAGCCTTGGTGGCCAACTGCTTTCTTGGAGCCTTTCCTCCGGTCGATTTGCGGGCGGTTTGCTTGGTACGAGCCATTTCAATTKGAATCCGATTGGGACTGTGAAGGAAACGGACGAAGGGAGGAGGGTTATAAGATAGGGTGCGGTGGAGGGGTGGAGACTCGGAATAGGAGAGGGATGGGGAGAATCAGACGGAATGAGTGTAATGTGTCCCCGCAGATGCGACTCCTCCTACTCACCGCAGACATTCACGATTCCGTATATAAGACGGTAGGAAACAGTCAGCAGCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAGGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACGAAGCCAGCCATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCCGGACTCATCTACGAGGAGACTCGTGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACCGCCATGGACGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>505 383 112</canonical_bands>
                <polymorphic_bands>888 112</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTTCTGGTAACGTCTGATCT</pcr_primer_p1>
		<pcr_primer_p2>CACCCTATCTTATAACCCTCCT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GACTTCTGGTAACGTCTGATCTCACGAAGAGCGACGGTTCCTGGACGGTAACGATGTGGCTTCTTGACTCCTCCTTGAGCTGGAGCAGACTTGCGAGCAGCCTTGGTGGCCAACTGCTTTCTTGGAGCCTTTCCTCCGGTCGATTTGCGGGCGGTTTGCTTGGTACGAGCCATTTCAATTGGAATCCGATTGGGACTGTGAAGGAAACGGACGAAGGGAGGAGGGTTATAAGATAGGGTG</canonical_amplicon>
		<polymorphic_amplicon>GACTTCTGGTAACGTCTGATCTCACGAAGAGCGACGGTTCCTGGACGGTAACGATGTGGCTTCTTGACTCCTCCTTGAGCTGGAGCAGACTTGCGAGCAGCCTTGGTGGCCAACTGCTTTCTTGGAGCCTTTCCTCCGGTCGATTTGCGGGCGGTTTGCTTGGTACGAGCCATTTCAATTKGAATCCGATTGGGACTGTGAAGGAAACGGACGAAGGGAGGAGGGTTATAAGATAGGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32298</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>77239</contig_pos>
        <strand>+</strand>
        <context>CCACAAATAT[C/T]CSGRRATCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATAT</left_flank>
        <right_flank>CAGGAATCCAATTTAATTCTAATAATAAATGAATGTGTATTTTTTGTCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTGTCCCCGCAGATGCGACTCCTCCTACTCACCGCAGACATTCACGATTCCGTATATAAGACGGTAGGAAACAGTCAGCAGCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAGGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACGAAGCCAGCCATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCCGGACTCATCTACGAGGAGACTCGTGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGAGGATAATTTATTAACTCTCATTCATACAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTTTTCAATTTTTAACGACTTCAAACATTAAAAAAGCTCTTTTTTCTTATTTATTATAAAACCCATATAAAAGTGAATTTTTTTATGTAAATTTAAAGTTCTATCGACCGATTATTTTTCCAGTCGCCGGTGTTTTTTATAGGCATGCGAAAAAAACTATTTTCTCTTCGATAACCGTTTCTTCACTGTTCCTATTTATCTCATTACTTCTCGTTATTACTCTAGGAATAAAAACTGTTTTATGACTAGGGTTTTCAGAGACGTCTCCATTTTTACTGCTTCCTTCACCTTCCGACGACCAGCCC</canonical>
            <polymorphic>ATGTGTCCCCGCAGATGCGACTCCTCCTACTCACCGCAGACATTCACGATTCCGTATATAAGACGGTAGGAAACAGTCAGCAGCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAGGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACGAAGCCAGCCATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCCGGACTCATCTACGAGGAGACTCGTGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGAGGATAATTTATTAACTCTCATTCATACAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATYCAGGAATCCAATTTAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTTTTCAATTTTTAACGACTTCAAACATTAAAAAAGCTCTTTTTTCTTATTTATTATAAAACCCATATAAAAGTGAATTTTTTTATGTAAATTTAAAGTTCTATCGACCGATTATTTTTCCAGTCGCCGGTGTTTTTTATAGGCATGCGAAAAAAACTATTTTCTCTTCGATAACCGTTTCTTCACTGTTCCTATTTATCTCATTACTTCTCGTTATTACTCTAGGAATAAAAACTGTTTTATGACTAGGGTTTTCAGAGACGTCTCCATTTTTACTGCTTCCTTCACCTTCCGACGACCAGCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATTCATACAACAACAACTAACC</pcr_primer_p1>
		<pcr_primer_p2>AAAATAAAGTCGGGAAATAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TCATTCATACAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCATTCATACAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATYCAGGAATCCAATTTAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32299</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>77241</contig_pos>
        <strand>+</strand>
        <context>ACAAATATYC[C/G]GRRATCCAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCC</left_flank>
        <right_flank>GGAATCCAATTTAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGTCCCCGCAGATGCGACTCCTCCTACTCACCGCAGACATTCACGATTCCGTATATAAGACGGTAGGAAACAGTCAGCAGCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAGGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACGAAGCCAGCCATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCCGGACTCATCTACGAGGAGACTCGTGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGAGGATAATTTATTAACTCTCATTCATACAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTTTTCAATTTTTAACGACTTCAAACATTAAAAAAGCTCTTTTTTCTTATTTATTATAAAACCCATATAAAAGTGAATTTTTTTATGTAAATTTAAAGTTCTATCGACCGATTATTTTTCCAGTCGCCGGTGTTTTTTATAGGCATGCGAAAAAAACTATTTTCTCTTCGATAACCGTTTCTTCACTGTTCCTATTTATCTCATTACTTCTCGTTATTACTCTAGGAATAAAAACTGTTTTATGACTAGGGTTTTCAGAGACGTCTCCATTTTTACTGCTTCCTTCACCTTCCGACGACCAGCCCTG</canonical>
            <polymorphic>GTGTCCCCGCAGATGCGACTCCTCCTACTCACCGCAGACATTCACGATTCCGTATATAAGACGGTAGGAAACAGTCAGCAGCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAGGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACGAAGCCAGCCATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCCGGACTCATCTACGAGGAGACTCGTGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGAGGATAATTTATTAACTCTCATTCATACAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCSGGAATCCAATTTAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTTTTCAATTTTTAACGACTTCAAACATTAAAAAAGCTCTTTTTTCTTATTTATTATAAAACCCATATAAAAGTGAATTTTTTTATGTAAATTTAAAGTTCTATCGACCGATTATTTTTCCAGTCGCCGGTGTTTTTTATAGGCATGCGAAAAAAACTATTTTCTCTTCGATAACCGTTTCTTCACTGTTCCTATTTATCTCATTACTTCTCGTTATTACTCTAGGAATAAAAACTGTTTTATGACTAGGGTTTTCAGAGACGTCTCCATTTTTACTGCTTCCTTCACCTTCCGACGACCAGCCCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACAACAACTAACCGAACC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATAAAGTCGGGAAATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>CAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCSGGAATCCAATTTAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32300</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>77243</contig_pos>
        <strand>+</strand>
        <context>AAATATYCSG[A/G]RATCCAATTK</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAG</left_flank>
        <right_flank>AATCCAATTTAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCCCCGCAGATGCGACTCCTCCTACTCACCGCAGACATTCACGATTCCGTATATAAGACGGTAGGAAACAGTCAGCAGCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAGGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACGAAGCCAGCCATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCCGGACTCATCTACGAGGAGACTCGTGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGAGGATAATTTATTAACTCTCATTCATACAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTTTTCAATTTTTAACGACTTCAAACATTAAAAAAGCTCTTTTTTCTTATTTATTATAAAACCCATATAAAAGTGAATTTTTTTATGTAAATTTAAAGTTCTATCGACCGATTATTTTTCCAGTCGCCGGTGTTTTTTATAGGCATGCGAAAAAAACTATTTTCTCTTCGATAACCGTTTCTTCACTGTTCCTATTTATCTCATTACTTCTCGTTATTACTCTAGGAATAAAAACTGTTTTATGACTAGGGTTTTCAGAGACGTCTCCATTTTTACTGCTTCCTTCACCTTCCGACGACCAGCCCTGCA</canonical>
            <polymorphic>GTCCCCGCAGATGCGACTCCTCCTACTCACCGCAGACATTCACGATTCCGTATATAAGACGGTAGGAAACAGTCAGCAGCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAGGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACGAAGCCAGCCATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCCGGACTCATCTACGAGGAGACTCGTGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGAGGATAATTTATTAACTCTCATTCATACAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGRAATCCAATTTAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTTTTCAATTTTTAACGACTTCAAACATTAAAAAAGCTCTTTTTTCTTATTTATTATAAAACCCATATAAAAGTGAATTTTTTTATGTAAATTTAAAGTTCTATCGACCGATTATTTTTCCAGTCGCCGGTGTTTTTTATAGGCATGCGAAAAAAACTATTTTCTCTTCGATAACCGTTTCTTCACTGTTCCTATTTATCTCATTACTTCTCGTTATTACTCTAGGAATAAAAACTGTTTTATGACTAGGGTTTTCAGAGACGTCTCCATTTTTACTGCTTCCTTCACCTTCCGACGACCAGCCCTGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>500 137 109 86 48 42 29 18 16 15</canonical_bands>
                <polymorphic_bands>586 137 109 48 42 29 18 16 15</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 213 157 86 44</canonical_bands>
                <polymorphic_bands>586 213 157 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACAACAACTAACCGAACC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATAAAGTCGGGAAATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>CAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGRAATCCAATTTAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32301</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>77244</contig_pos>
        <strand>+</strand>
        <context>AATATYCSGR[A/G]ATCCAATTKA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGG</left_flank>
        <right_flank>ATCCAATTTAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCCCGCAGATGCGACTCCTCCTACTCACCGCAGACATTCACGATTCCGTATATAAGACGGTAGGAAACAGTCAGCAGCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAGGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACGAAGCCAGCCATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCCGGACTCATCTACGAGGAGACTCGTGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGAGGATAATTTATTAACTCTCATTCATACAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTTTTCAATTTTTAACGACTTCAAACATTAAAAAAGCTCTTTTTTCTTATTTATTATAAAACCCATATAAAAGTGAATTTTTTTATGTAAATTTAAAGTTCTATCGACCGATTATTTTTCCAGTCGCCGGTGTTTTTTATAGGCATGCGAAAAAAACTATTTTCTCTTCGATAACCGTTTCTTCACTGTTCCTATTTATCTCATTACTTCTCGTTATTACTCTAGGAATAAAAACTGTTTTATGACTAGGGTTTTCAGAGACGTCTCCATTTTTACTGCTTCCTTCACCTTCCGACGACCAGCCCTGCAC</canonical>
            <polymorphic>TCCCCGCAGATGCGACTCCTCCTACTCACCGCAGACATTCACGATTCCGTATATAAGACGGTAGGAAACAGTCAGCAGCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAGGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACGAAGCCAGCCATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCCGGACTCATCTACGAGGAGACTCGTGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGAGGATAATTTATTAACTCTCATTCATACAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGRATCCAATTTAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTTTTCAATTTTTAACGACTTCAAACATTAAAAAAGCTCTTTTTTCTTATTTATTATAAAACCCATATAAAAGTGAATTTTTTTATGTAAATTTAAAGTTCTATCGACCGATTATTTTTCCAGTCGCCGGTGTTTTTTATAGGCATGCGAAAAAAACTATTTTCTCTTCGATAACCGTTTCTTCACTGTTCCTATTTATCTCATTACTTCTCGTTATTACTCTAGGAATAAAAACTGTTTTATGACTAGGGTTTTCAGAGACGTCTCCATTTTTACTGCTTCCTTCACCTTCCGACGACCAGCCCTGCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>501 137 109 86 48 42 29 18 16 14</canonical_bands>
                <polymorphic_bands>587 137 109 48 42 29 18 16 14</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 213 157 86 43</canonical_bands>
                <polymorphic_bands>587 213 157 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACAACAACTAACCGAACC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATAAAGTCGGGAAATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>CAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGRATCCAATTTAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32302</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>77253</contig_pos>
        <strand>+</strand>
        <context>RRATCCAATT[G/T]AATTYKAWTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATT</left_flank>
        <right_flank>AATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGCGACTCCTCCTACTCACCGCAGACATTCACGATTCCGTATATAAGACGGTAGGAAACAGTCAGCAGCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAGGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACGAAGCCAGCCATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCCGGACTCATCTACGAGGAGACTCGTGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGAGGATAATTTATTAACTCTCATTCATACAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTTTTCAATTTTTAACGACTTCAAACATTAAAAAAGCTCTTTTTTCTTATTTATTATAAAACCCATATAAAAGTGAATTTTTTTATGTAAATTTAAAGTTCTATCGACCGATTATTTTTCCAGTCGCCGGTGTTTTTTATAGGCATGCGAAAAAAACTATTTTCTCTTCGATAACCGTTTCTTCACTGTTCCTATTTATCTCATTACTTCTCGTTATTACTCTAGGAATAAAAACTGTTTTATGACTAGGGTTTTCAGAGACGTCTCCATTTTTACTGCTTCCTTCACCTTCCGACGACCAGCCCTGCACGAGGATTGT</canonical>
            <polymorphic>ATGCGACTCCTCCTACTCACCGCAGACATTCACGATTCCGTATATAAGACGGTAGGAAACAGTCAGCAGCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAGGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACGAAGCCAGCCATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCCGGACTCATCTACGAGGAGACTCGTGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGAGGATAATTTATTAACTCTCATTCATACAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTKAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTTTTCAATTTTTAACGACTTCAAACATTAAAAAAGCTCTTTTTTCTTATTTATTATAAAACCCATATAAAAGTGAATTTTTTTATGTAAATTTAAAGTTCTATCGACCGATTATTTTTCCAGTCGCCGGTGTTTTTTATAGGCATGCGAAAAAAACTATTTTCTCTTCGATAACCGTTTCTTCACTGTTCCTATTTATCTCATTACTTCTCGTTATTACTCTAGGAATAAAAACTGTTTTATGACTAGGGTTTTCAGAGACGTCTCCATTTTTACTGCTTCCTTCACCTTCCGACGACCAGCCCTGCACGAGGATTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>422 226 143 77 65 51 16</canonical_bands>
                <polymorphic_bands>422 226 143 128 65 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACAACAACTAACCGAACC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATAAAGTCGGGAAATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>CAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTKAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32303</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>77258</contig_pos>
        <strand>+</strand>
        <context>CAATTKAATT[C/T]KAWTAATAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATT</left_flank>
        <right_flank>TAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCCTCCTACTCACCGCAGACATTCACGATTCCGTATATAAGACGGTAGGAAACAGTCAGCAGCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAGGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACGAAGCCAGCCATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCCGGACTCATCTACGAGGAGACTCGTGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGAGGATAATTTATTAACTCTCATTCATACAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTTTTCAATTTTTAACGACTTCAAACATTAAAAAAGCTCTTTTTTCTTATTTATTATAAAACCCATATAAAAGTGAATTTTTTTATGTAAATTTAAAGTTCTATCGACCGATTATTTTTCCAGTCGCCGGTGTTTTTTATAGGCATGCGAAAAAAACTATTTTCTCTTCGATAACCGTTTCTTCACTGTTCCTATTTATCTCATTACTTCTCGTTATTACTCTAGGAATAAAAACTGTTTTATGACTAGGGTTTTCAGAGACGTCTCCATTTTTACTGCTTCCTTCACCTTCCGACGACCAGCCCTGCACGAGGATTGTTTTAA</canonical>
            <polymorphic>ACTCCTCCTACTCACCGCAGACATTCACGATTCCGTATATAAGACGGTAGGAAACAGTCAGCAGCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAGGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACGAAGCCAGCCATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCCGGACTCATCTACGAGGAGACTCGTGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGAGGATAATTTATTAACTCTCATTCATACAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATTYTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTTTTCAATTTTTAACGACTTCAAACATTAAAAAAGCTCTTTTTTCTTATTTATTATAAAACCCATATAAAAGTGAATTTTTTTATGTAAATTTAAAGTTCTATCGACCGATTATTTTTCCAGTCGCCGGTGTTTTTTATAGGCATGCGAAAAAAACTATTTTCTCTTCGATAACCGTTTCTTCACTGTTCCTATTTATCTCATTACTTCTCGTTATTACTCTAGGAATAAAAACTGTTTTATGACTAGGGTTTTCAGAGACGTCTCCATTTTTACTGCTTCCTTCACCTTCCGACGACCAGCCCTGCACGAGGATTGTTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACAACAACTAACCGAACC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATAAAGTCGGGAAATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>CAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATTYTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32304</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>77259</contig_pos>
        <strand>+</strand>
        <context>AATTKAATTY[G/T]AWTAATAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATTC</left_flank>
        <right_flank>AATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCTCCTACTCACCGCAGACATTCACGATTCCGTATATAAGACGGTAGGAAACAGTCAGCAGCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAGGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACGAAGCCAGCCATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCCGGACTCATCTACGAGGAGACTCGTGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGAGGATAATTTATTAACTCTCATTCATACAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTTTTCAATTTTTAACGACTTCAAACATTAAAAAAGCTCTTTTTTCTTATTTATTATAAAACCCATATAAAAGTGAATTTTTTTATGTAAATTTAAAGTTCTATCGACCGATTATTTTTCCAGTCGCCGGTGTTTTTTATAGGCATGCGAAAAAAACTATTTTCTCTTCGATAACCGTTTCTTCACTGTTCCTATTTATCTCATTACTTCTCGTTATTACTCTAGGAATAAAAACTGTTTTATGACTAGGGTTTTCAGAGACGTCTCCATTTTTACTGCTTCCTTCACCTTCCGACGACCAGCCCTGCACGAGGATTGTTTTAAT</canonical>
            <polymorphic>CTCCTCCTACTCACCGCAGACATTCACGATTCCGTATATAAGACGGTAGGAAACAGTCAGCAGCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAGGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACGAAGCCAGCCATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCCGGACTCATCTACGAGGAGACTCGTGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGAGGATAATTTATTAACTCTCATTCATACAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATTCKAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTTTTCAATTTTTAACGACTTCAAACATTAAAAAAGCTCTTTTTTCTTATTTATTATAAAACCCATATAAAAGTGAATTTTTTTATGTAAATTTAAAGTTCTATCGACCGATTATTTTTCCAGTCGCCGGTGTTTTTTATAGGCATGCGAAAAAAACTATTTTCTCTTCGATAACCGTTTCTTCACTGTTCCTATTTATCTCATTACTTCTCGTTATTACTCTAGGAATAAAAACTGTTTTATGACTAGGGTTTTCAGAGACGTCTCCATTTTTACTGCTTCCTTCACCTTCCGACGACCAGCCCTGCACGAGGATTGTTTTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACAACAACTAACCGAACC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATAAAGTCGGGAAATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>CAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATTCKAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32305</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>77261</contig_pos>
        <strand>+</strand>
        <context>TTKAATTYKA[A/T]TAATAAATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATTCTA</left_flank>
        <right_flank>TAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCCTACTCACCGCAGACATTCACGATTCCGTATATAAGACGGTAGGAAACAGTCAGCAGCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAGGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACGAAGCCAGCCATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCCGGACTCATCTACGAGGAGACTCGTGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGAGGATAATTTATTAACTCTCATTCATACAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTTTTCAATTTTTAACGACTTCAAACATTAAAAAAGCTCTTTTTTCTTATTTATTATAAAACCCATATAAAAGTGAATTTTTTTATGTAAATTTAAAGTTCTATCGACCGATTATTTTTCCAGTCGCCGGTGTTTTTTATAGGCATGCGAAAAAAACTATTTTCTCTTCGATAACCGTTTCTTCACTGTTCCTATTTATCTCATTACTTCTCGTTATTACTCTAGGAATAAAAACTGTTTTATGACTAGGGTTTTCAGAGACGTCTCCATTTTTACTGCTTCCTTCACCTTCCGACGACCAGCCCTGCACGAGGATTGTTTTAATTA</canonical>
            <polymorphic>CCTCCTACTCACCGCAGACATTCACGATTCCGTATATAAGACGGTAGGAAACAGTCAGCAGCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAGGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACGAAGCCAGCCATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCCGGACTCATCTACGAGGAGACTCGTGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGAGGATAATTTATTAACTCTCATTCATACAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATTCTAWTAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTTTTCAATTTTTAACGACTTCAAACATTAAAAAAGCTCTTTTTTCTTATTTATTATAAAACCCATATAAAAGTGAATTTTTTTATGTAAATTTAAAGTTCTATCGACCGATTATTTTTCCAGTCGCCGGTGTTTTTTATAGGCATGCGAAAAAAACTATTTTCTCTTCGATAACCGTTTCTTCACTGTTCCTATTTATCTCATTACTTCTCGTTATTACTCTAGGAATAAAAACTGTTTTATGACTAGGGTTTTCAGAGACGTCTCCATTTTTACTGCTTCCTTCACCTTCCGACGACCAGCCCTGCACGAGGATTGTTTTAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACAACAACTAACCGAACC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATAAAGTCGGGAAATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>CAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATTCTAWTAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32306</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>77272</contig_pos>
        <strand>+</strand>
        <context>TAATAAATGA[A/G]TKTGTATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTAGGGCCACAAATATCCAGGAATCCAATTTAATTCTAATAATAAATGA</left_flank>
        <right_flank>TGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGCAGACATTCACGATTCCGTATATAAGACGGTAGGAAACAGTCAGCAGCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAGGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACGAAGCCAGCCATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCCGGACTCATCTACGAGGAGACTCGTGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGAGGATAATTTATTAACTCTCATTCATACAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTTTTCAATTTTTAACGACTTCAAACATTAAAAAAGCTCTTTTTTCTTATTTATTATAAAACCCATATAAAAGTGAATTTTTTTATGTAAATTTAAAGTTCTATCGACCGATTATTTTTCCAGTCGCCGGTGTTTTTTATAGGCATGCGAAAAAAACTATTTTCTCTTCGATAACCGTTTCTTCACTGTTCCTATTTATCTCATTACTTCTCGTTATTACTCTAGGAATAAAAACTGTTTTATGACTAGGGTTTTCAGAGACGTCTCCATTTTTACTGCTTCCTTCACCTTCCGACGACCAGCCCTGCACGAGGATTGTTTTAATTATGTGGTTTTTC</canonical>
            <polymorphic>CCGCAGACATTCACGATTCCGTATATAAGACGGTAGGAAACAGTCAGCAGCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAGGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACGAAGCCAGCCATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCCGGACTCATCTACGAGGAGACTCGTGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGAGGATAATTTATTAACTCTCATTCATACAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATTCTAATAATAAATGARTGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTTTTCAATTTTTAACGACTTCAAACATTAAAAAAGCTCTTTTTTCTTATTTATTATAAAACCCATATAAAAGTGAATTTTTTTATGTAAATTTAAAGTTCTATCGACCGATTATTTTTCCAGTCGCCGGTGTTTTTTATAGGCATGCGAAAAAAACTATTTTCTCTTCGATAACCGTTTCTTCACTGTTCCTATTTATCTCATTACTTCTCGTTATTACTCTAGGAATAAAAACTGTTTTATGACTAGGGTTTTCAGAGACGTCTCCATTTTTACTGCTTCCTTCACCTTCCGACGACCAGCCCTGCACGAGGATTGTTTTAATTATGTGGTTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACAACAACTAACCGAACC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATAAAGTCGGGAAATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>CAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATTCTAATAATAAATGARTGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32307</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>77274</contig_pos>
        <strand>+</strand>
        <context>ATAAATGART[G/T]TGTATTTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAGGGCCACAAATATCCAGGAATCCAATTTAATTCTAATAATAAATGAAT</left_flank>
        <right_flank>TGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAGACATTCACGATTCCGTATATAAGACGGTAGGAAACAGTCAGCAGCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAGGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACGAAGCCAGCCATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCCGGACTCATCTACGAGGAGACTCGTGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGAGGATAATTTATTAACTCTCATTCATACAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTTTTCAATTTTTAACGACTTCAAACATTAAAAAAGCTCTTTTTTCTTATTTATTATAAAACCCATATAAAAGTGAATTTTTTTATGTAAATTTAAAGTTCTATCGACCGATTATTTTTCCAGTCGCCGGTGTTTTTTATAGGCATGCGAAAAAAACTATTTTCTCTTCGATAACCGTTTCTTCACTGTTCCTATTTATCTCATTACTTCTCGTTATTACTCTAGGAATAAAAACTGTTTTATGACTAGGGTTTTCAGAGACGTCTCCATTTTTACTGCTTCCTTCACCTTCCGACGACCAGCCCTGCACGAGGATTGTTTTAATTATGTGGTTTTTCTT</canonical>
            <polymorphic>GCAGACATTCACGATTCCGTATATAAGACGGTAGGAAACAGTCAGCAGCATCTCACTTGTGAGTCTTCATCAATCGCATTCAACATGTCCGGACGTGGAAAGGGAGGAAAAGGCCTCGGAAAGGGAGGAGCCAAGCGCCATCGCAAAGTTCTTCGTGACAACATCCAAGGAATCACGAAGCCAGCCATTCGCCGTCTCGCCAGAAGAGGAGGAGTCAAGCGTATCTCCGGACTCATCTACGAGGAGACTCGTGGAGTTCTCAAGGTGTTCCTCGAGAACGTCATCCGTGACGCCGTCACCTACTGCGAGCACGCCAAGAGAAAGACCGTCACCGCCATGGACGTCGTCTATGCTTTGAAGCGTCAAGGAAGAACCCTGTACGGATTCGGAGGATAATTTATTAACTCTCATTCATACAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATTCTAATAATAAATGAATKTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTTTTCAATTTTTAACGACTTCAAACATTAAAAAAGCTCTTTTTTCTTATTTATTATAAAACCCATATAAAAGTGAATTTTTTTATGTAAATTTAAAGTTCTATCGACCGATTATTTTTCCAGTCGCCGGTGTTTTTTATAGGCATGCGAAAAAAACTATTTTCTCTTCGATAACCGTTTCTTCACTGTTCCTATTTATCTCATTACTTCTCGTTATTACTCTAGGAATAAAAACTGTTTTATGACTAGGGTTTTCAGAGACGTCTCCATTTTTACTGCTTCCTTCACCTTCCGACGACCAGCCCTGCACGAGGATTGTTTTAATTATGTGGTTTTTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>126 114 102 78 76 60 57 53 45 44 36 22 22 22 20 18 18 14 13 11 10 9 9 9 6 6</canonical_bands>
                <polymorphic_bands>126 121 114 102 78 60 57 53 44 36 22 22 22 20 18 18 14 13 11 10 9 9 9 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACAACAACTAACCGAACC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATAAAGTCGGGAAATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATTCTAATAATAAATGAATGTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>CAACAACAACTAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGGAATCCAATTTAATTCTAATAATAAATGAATKTGTATTTTTTGTCTATATATTTTGCTATTTAAAGGAGGGCAGACAGAAAAAATTTCGGGGAAAATTTCAGGGAATGTGTATTTTGCCGTCGCGGTGTTCGCACCTAAAGCACGCAATCCCACGCGCAAACATTTTTATTTTTTTATTTCCCGACTTTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32308</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>83817</contig_pos>
        <strand></strand>
        <context>TTGGATTTTT[T/C]GGTATTTGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAAGAAAAAAAATACAAACTCATTTATTAATCAAATTCAATTGGATTTTT</left_flank>
        <right_flank>GGTATTTGTGGCCCTAAAGAGGGCCGTTGGGTTCGGTGAAGTTTGATTGT</right_flank>
        <qual_score>35</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAGAAGAATATTACAACAGTTATACTAGACAAAGCCAACGTCCCTAGCATAAATGAACTAGCCAAAGTTAACCGAAGTCCACTACCCTGAAAATAATTTTGGCTTTTAGAATGTACAACAAAGTTTTTGAAAAAGAAAAATTTTACCAATTCAAGATAAGTTCTGTTACTTGTCCAATTTGGTGTGAATATGCCAAGAATATTAAAAATCAAAGAATTGAAAACAAGGAAGCCGAGAAAAGCAATCTTGACATCAGTCATTCCACTTTGATGAATTGAATTTTATAATGCACTTGGTATGGTATTTCTTATCAGGCGCTTGCATTATTTGTTCCCCTTTGGGAAGTCAGTAGTATGATATGTGAGTTGTGGGATCGAAAAATTATACAAACGCCTGATAATTCAGTTTTTCAAATATTTCGCCTTTTATGGAATGCAGACTCTTCATACAAGAAAAAAAATACAAACTCATTTATTAATCAAATTCAATTGGATTTTTTGGTATTTGTGGCCCTAAAGAGGGCCGTTGGGTTCGGTGAAGTTTGATTGTATGAATCAGAGAAAGATAATAAAATTATCCTCCGAATCCGTACAGGGTTCTTCCTTGACGCTTCAAAGCATAGACGACGTCCATGGCAGTGACGGTCTTTCTCTTGGCGTGCTCGCAGTAGGTGACGGCGTCACGGATGACGTTCTCGAGGAACACCTTGAGAACTCCACGAGTCTCCTCGTAGATGAGTCCGGAGATACGCTTGACTCCTCCTCTTCTGGCGAGACGGCGAATGGCTGGCTTCGTGATTCCTTGGATGTTGTCACGAAGAACTTTGCGATGGCGCTTGGCTCCTCCCTTTCCGAGGCCTTTTCCTCCCTTTCCACGTCCGGACATGTTGAATGCGATTGATGAAGACTCACAAGTGAGATGCTGCTGACTGTTTCCTACCGTCTTATATACGGAATCGTGAATGTCTGCGGTGAGTAGGAGGAGTCGCATTTGCGGGGA</canonical>
            <polymorphic>GTAGAAGAATATTACAACAGTTATACTAGACAAAGCCAACGTCCCTAGCATAAATGAACTAGCCAAAGTTAACCGAAGTCCACTACCCTGAAAATAATTTTGGCTTTTAGAATGTACAACAAAGTTTTTGAAAAAGAAAAATTTTACCAATTCAAGATAAGTTCTGTTACTTGTCCAATTTGGTGTGAATATGCCAAGAATATTAAAAATCAAAGAATTGAAAACAAGGAAGCCGAGAAAAGCAATCTTGACATCAGTCATTCCACTTTGATGAATTGAATTTTATAATGCACTTGGTATGGTATTTCTTATCAGGCGCTTGCATTATTTGTTCCCCTTTGGGAAGTCAGTAGTATGATATGTGAGTTGTGGGATCGAAAAATTATACAAACGCCTGATAATTCAGTTTTTCAAATATTTCGCCTTTTATGGAATGCAGACTCTTCATACAAGAAAAAAAATACAAACTCATTTATTAATCAAATTCAATTGGATTTTTYGGTATTTGTGGCCCTAAAGAGGGCCGTTGGGTTCGGTGAAGTTTGATTGTATGAATCAGAGAAAGATAATAAAATTATCCTCCGAATCCGTACAGGGTTCTTCCTTGACGCTTCAAAGCATAGACGACGTCCATGGCAGTGACGGTCTTTCTCTTGGCGTGCTCGCAGTAGGTGACGGCGTCACGGATGACGTTCTCGAGGAACACCTTGAGAACTCCACGAGTCTCCTCGTAGATGAGTCCGGAGATACGCTTGACTCCTCCTCTTCTGGCGAGACGGCGAATGGCTGGCTTCGTGATTCCTTGGATGTTGTCACGAAGAACTTTGCGATGGCGCTTGGCTCCTCCCTTTCCGAGGCCTTTTCCTCCCTTTCCACGTCCGGACATGTTGAATGCGATTGATGAAGACTCACAAGTGAGATGCTGCTGACTGTTTCCTACCGTCTTATATACGGAATCGTGAATGTCTGCGGTGAGTAGGAGGAGTCGCATTTGCGGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAATATTTCGCCTTTTAT</pcr_primer_p1>
		<pcr_primer_p2>CAAGAGAAAGACCGTCACTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAATATTTCGCCTTTTATGGAATGCAGACTCTTCATACAAGAAAAAAAATACAAACTCATTTATTAATCAAATTCAATTGGATTTTTTGGTATTTGTGGCCCTAAAGAGGGCCGTTGGGTTCGGTGAAGTTTGATTGTATGAATCAGAGAAAGATAATAAAATTATCCTCCGAATCCGTACAGGGTTCTTCCTTGACGCTTCAAAGCATAGACGACGTCCATGGCAGTGACGGTCTTTCTCTTG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAATATTTCGCCTTTTATGGAATGCAGACTCTTCATACAAGAAAAAAAATACAAACTCATTTATTAATCAAATTCAATTGGATTTTTYGGTATTTGTGGCCCTAAAGAGGGCCGTTGGGTTCGGTGAAGTTTGATTGTATGAATCAGAGAAAGATAATAAAATTATCCTCCGAATCCGTACAGGGTTCTTCCTTGACGCTTCAAAGCATAGACGACGTCCATGGCAGTGACGGTCTTTCTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32309</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>83856</contig_pos>
        <strand>-</strand>
        <context>GGGTTCGGTG[A/T]AGTTTGATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTGGATTTTTTGGTATTTGTGGCCCTAAAGAGGGCCGTTGGGTTCGGTG</left_flank>
        <right_flank>AGTTTGATTGTATGAATCAGAGAAAGATAATAAAATTATCCTCCGAATCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTCCCTAGCATAAATGAACTAGCCAAAGTTAACCGAAGTCCACTACCCTGAAAATAATTTTGGCTTTTAGAATGTACAACAAAGTTTTTGAAAAAGAAAAATTTTACCAATTCAAGATAAGTTCTGTTACTTGTCCAATTTGGTGTGAATATGCCAAGAATATTAAAAATCAAAGAATTGAAAACAAGGAAGCCGAGAAAAGCAATCTTGACATCAGTCATTCCACTTTGATGAATTGAATTTTATAATGCACTTGGTATGGTATTTCTTATCAGGCGCTTGCATTATTTGTTCCCCTTTGGGAAGTCAGTAGTATGATATGTGAGTTGTGGGATCGAAAAATTATACAAACGCCTGATAATTCAGTTTTTCAAATATTTCGCCTTTTATGGAATGCAGACTCTTCATACAAGAAAAAAAATACAAACTCATTTATTAATCAAATTCAATTGGATTTTTTGGTATTTGTGGCCCTAAAGAGGGCCGTTGGGTTCGGTGAAGTTTGATTGTATGAATCAGAGAAAGATAATAAAATTATCCTCCGAATCCGTACAGGGTTCTTCCTTGACGCTTCAAAGCATAGACGACGTCCATGGCAGTGACGGTCTTTCTCTTGGCGTGCTCGCAGTAGGTGACGGCGTCACGGATGACGTTCTCGAGGAACACCTTGAGAACTCCACGAGTCTCCTCGTAGATGAGTCCGGAGATACGCTTGACTCCTCCTCTTCTGGCGAGACGGCGAATGGCTGGCTTCGTGATTCCTTGGATGTTGTCACGAAGAACTTTGCGATGGCGCTTGGCTCCTCCCTTTCCGAGGCCTTTTCCTCCCTTTCCACGTCCGGACATGTTGAATGCGATTGATGAAGACTCACAAGTGAGATGCTGCTGACTGTTTCCTACCGTCTTATATACGGAATCGTGAATGTCTGCGGTGAGTAGGAGGAGTCGCATTTGCGGGGACACATTACACTCATTCCGTCTGATTCTCCCCATCCCTCT</canonical>
            <polymorphic>CGTCCCTAGCATAAATGAACTAGCCAAAGTTAACCGAAGTCCACTACCCTGAAAATAATTTTGGCTTTTAGAATGTACAACAAAGTTTTTGAAAAAGAAAAATTTTACCAATTCAAGATAAGTTCTGTTACTTGTCCAATTTGGTGTGAATATGCCAAGAATATTAAAAATCAAAGAATTGAAAACAAGGAAGCCGAGAAAAGCAATCTTGACATCAGTCATTCCACTTTGATGAATTGAATTTTATAATGCACTTGGTATGGTATTTCTTATCAGGCGCTTGCATTATTTGTTCCCCTTTGGGAAGTCAGTAGTATGATATGTGAGTTGTGGGATCGAAAAATTATACAAACGCCTGATAATTCAGTTTTTCAAATATTTCGCCTTTTATGGAATGCAGACTCTTCATACAAGAAAAAAAATACAAACTCATTTATTAATCAAATTCAATTGGATTTTTTGGTATTTGTGGCCCTAAAGAGGGCCGTTGGGTTCGGTGWAGTTTGATTGTATGAATCAGAGAAAGATAATAAAATTATCCTCCGAATCCGTACAGGGTTCTTCCTTGACGCTTCAAAGCATAGACGACGTCCATGGCAGTGACGGTCTTTCTCTTGGCGTGCTCGCAGTAGGTGACGGCGTCACGGATGACGTTCTCGAGGAACACCTTGAGAACTCCACGAGTCTCCTCGTAGATGAGTCCGGAGATACGCTTGACTCCTCCTCTTCTGGCGAGACGGCGAATGGCTGGCTTCGTGATTCCTTGGATGTTGTCACGAAGAACTTTGCGATGGCGCTTGGCTCCTCCCTTTCCGAGGCCTTTTCCTCCCTTTCCACGTCCGGACATGTTGAATGCGATTGATGAAGACTCACAAGTGAGATGCTGCTGACTGTTTCCTACCGTCTTATATACGGAATCGTGAATGTCTGCGGTGAGTAGGAGGAGTCGCATTTGCGGGGACACATTACACTCATTCCGTCTGATTCTCCCCATCCCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAATATTTCGCCTTTTAT</pcr_primer_p1>
		<pcr_primer_p2>CAAGAGAAAGACCGTCACTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAATATTTCGCCTTTTATGGAATGCAGACTCTTCATACAAGAAAAAAAATACAAACTCATTTATTAATCAAATTCAATTGGATTTTTTGGTATTTGTGGCCCTAAAGAGGGCCGTTGGGTTCGGTGAAGTTTGATTGTATGAATCAGAGAAAGATAATAAAATTATCCTCCGAATCCGTACAGGGTTCTTCCTTGACGCTTCAAAGCATAGACGACGTCCATGGCAGTGACGGTCTTTCTCTTG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAATATTTCGCCTTTTATGGAATGCAGACTCTTCATACAAGAAAAAAAATACAAACTCATTTATTAATCAAATTCAATTGGATTTTTTGGTATTTGTGGCCCTAAAGAGGGCCGTTGGGTTCGGTGWAGTTTGATTGTATGAATCAGAGAAAGATAATAAAATTATCCTCCGAATCCGTACAGGGTTCTTCCTTGACGCTTCAAAGCATAGACGACGTCCATGGCAGTGACGGTCTTTCTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32310</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>85195</contig_pos>
        <strand>+</strand>
        <context>ATGTCCTCTC[A/C]GAACTTGTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGTTTGTTGAACATTTCTGATTTTATATTAACAATGTTCAATGTCCTCTC</left_flank>
        <right_flank>GAACTTGTGAAAGATCTTTTGAATCCAAATGACCTTCGCAGGATTAGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTCGCTTCCAATCTTCCGCTGTCATGGCTCTTCAAGAGTCCGCTGAGGCTTACCTCGTCGGACTTTTCGAGGACACCAACTTGTGCGCCATCCACGCCAAGCGAGTCACCATCATGCCAAAGGACATCCAATTGGCCAGACGTATCCGAGGAGAGCGTGCTTAAATTTCCAGTTTTGGATTTTGAGACCGTTTCGATTCACTGAACCAACTCAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGAATCCTTTTCAACATGTTGTTTTAAATAAATACATAAATTTTCCTGTTTTCACCCTGTTCCTTCATTTTACTGTATATCATCAAAACCTGAAATCGGTCACAGTTTCACCAGATTTGATGTTAGGATTAGAAGCAATTTAGCAACTATTGCAATATTTTATTCAATTTATTTGATAATCTCATGCAGTGTGTTTTGTTTGTTGAACATTTCTGATTTTATATTAACAATGTTCAATGTCCTCTCCGAACTTGTGAAAGATCTTTTGAATCCAAATGACCTTCGCAGGATTAGATTAATGGTGCGATGGAAATTAGGACATTTCGTTGGGCGCCAATTTTAAATTCAAATCGTTGTACAAAGAGCGTATGCAGCTCTTCATGTTTGTACAGATGGGAGGTTCTTATCAAGAATTTGTGTTATCAATGTGTTTTGTTTGCTAATCAACATCAGTTTTGGCGGCAACATTCAAATACGAAAATTCGAATCGAAACTCTGAAAGGTGTCGGAAAGGAAATTTCTTGGTAAAACTGATTGAAAATGTACATATATTCGAAATCAAAAAACACAGAAGGAAGTTGAGTTGGAGAGCTTTGTAAATTTAAAAATCATCAAATTTTTTCTTTAAAATTGCGAAACAGCAAAAAATTGAAAATATAATTAAGCTTTATCAAAATGTGAATCAGATGGATTTTTGTAATAGTTGTGGCCCTAAAGAGGGCCGTTGGGTTCGGTAGATGGGGATCA</canonical>
            <polymorphic>CCTTCGCTTCCAATCTTCCGCTGTCATGGCTCTTCAAGAGTCCGCTGAGGCTTACCTCGTCGGACTTTTCGAGGACACCAACTTGTGCGCCATCCACGCCAAGCGAGTCACCATCATGCCAAAGGACATCCAATTGGCCAGACGTATCCGAGGAGAGCGTGCTTAAATTTCCAGTTTTGGATTTTGAGACCGTTTCGATTCACTGAACCAACTCAACCGAACCCAACGGCCCTCTTTAGGGCCACAAATATCCAGAATCCTTTTCAACATGTTGTTTTAAATAAATACATAAATTTTCCTGTTTTCACCCTGTTCCTTCATTTTACTGTATATCATCAAAACCTGAAATCGGTCACAGTTTCACCAGATTTGATGTTAGGATTAGAAGCAATTTAGCAACTATTGCAATATTTTATTCAATTTATTTGATAATCTCATGCAGTGTGTTTTGTTTGTTGAACATTTCTGATTTTATATTAACAATGTTCAATGTCCTCTCMGAACTTGTGAAAGATCTTTTGAATCCAAATGACCTTCGCAGGATTAGATTAATGGTGCGATGGAAATTAGGACATTTCGTTGGGCGCCAATTTTAAATTCAAATCGTTGTACAAAGAGCGTATGCAGCTCTTCATGTTTGTACAGATGGGAGGTTCTTATCAAGAATTTGTGTTATCAATGTGTTTTGTTTGCTAATCAACATCAGTTTTGGCGGCAACATTCAAATACGAAAATTCGAATCGAAACTCTGAAAGGTGTCGGAAAGGAAATTTCTTGGTAAAACTGATTGAAAATGTACATATATTCGAAATCAAAAAACACAGAAGGAAGTTGAGTTGGAGAGCTTTGTAAATTTAAAAATCATCAAATTTTTTCTTTAAAATTGCGAAACAGCAAAAAATTGAAAATATAATTAAGCTTTATCAAAATGTGAATCAGATGGATTTTTGTAATAGTTGTGGCCCTAAAGAGGGCCGTTGGGTTCGGTAGATGGGGATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTTTGTTGAACATTTCTGA</pcr_primer_p1>
		<pcr_primer_p2>TTAGCAAACAAAACACATTGATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTGTTTGTTGAACATTTCTGATTTTATATTAACAATGTTCAATGTCCTCTCCGAACTTGTGAAAGATCTTTTGAATCCAAATGACCTTCGCAGGATTAGATTAATGGTGCGATGGAAATTAGGACATTTCGTTGGGCGCCAATTTTAAATTCAAATCGTTGTACAAAGAGCGTATGCAGCTCTTCATGTTTGTACAGATGGGAGGTTCTTATCAAGAATTTGTGTTATCAATGTGTTTTGTTTGCTAA</canonical_amplicon>
		<polymorphic_amplicon>TTTGTTTGTTGAACATTTCTGATTTTATATTAACAATGTTCAATGTCCTCTCMGAACTTGTGAAAGATCTTTTGAATCCAAATGACCTTCGCAGGATTAGATTAATGGTGCGATGGAAATTAGGACATTTCGTTGGGCGCCAATTTTAAATTCAAATCGTTGTACAAAGAGCGTATGCAGCTCTTCATGTTTGTACAGATGGGAGGTTCTTATCAAGAATTTGTGTTATCAATGTGTTTTGTTTGCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32311</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>106725</contig_pos>
        <strand>+</strand>
        <context>TTTTTTTCCG[A/T]CCACAAATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTACTATCATTCTTCCAATAAAACCATTCCATTTTCTTTCTTTTTTTCCG</left_flank>
        <right_flank>CCACAAATGAGCCGTGTGGGTGGTTGGTGAGTAATCCAAATGCTCCCACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGGAGAGAGTCGATGGCTCGAACTGCATTTGAGTATGCAGACGGACCCGTTACCCAGATACATACAATGGGAATTATGTTGAAAGAAAATTTTGAGGAACTCATTTATCAGGTCAAACAGGAGAAATCGACAGATGAGAAAAGTGTCGAAAGATTGCGGGTGTTGCAGAAAATCTATGATCATGTTAAGGTTTGTCTTTGATCCCTCATTTTCCACCTTTTTCCAGTTCCTCGTAATGTCTGTCTGCTCTTTTGAAAATCCCATATTCCAGATGATCCGTGAACACGACGACGACAATGACGAAGACAGCCGCGTCGCCCTTGAATGGCGATTCGCCGCCATCGTCGTCGACCGCCTTTGCCTTCTGGTCTTCTCGATTCTCATCATTATCGTATCCATCATCATCGCTTGGCGTGCACCGTATCTCTTTGCCTAGACCCTCTCTGCTTACTATCATTCTTCCAATAAAACCATTCCATTTTCTTTCTTTTTTTCCGACCACAAATGAGCCGTGTGGGTGGTTGGTGAGTAATCCAAATGCTCCCACACATAAGCTCAAATAGGGCAGCAGCACCCAATTAATGTGCCCTCTTCGTCTTTGAGAAGAAGCTGGAGGCGAAGAATCGTTTTTGGAAATGGGTGCGAATTGGGTGAAATAAGATGAATGAGTCCCGATTCAGAGGGTAGTTGTGGGTCATTAGGTGACTAATGTTCTCGTACAGCTATAAAGGATTTTTATGAGGCTCGAAACGCCAAAAAGGATTTCAGGCTCGGTCGAAAGTCATGAAGTCTGAATTGGTCAAAAGAGATACGGTAGCTAATGGGCTTCTTGTCACATTTACCAGAGCTAACAACCCGACAAAAGGATGAATAGCGGTAAATTAGGTTTACGGTAGTTTCGGGTCAATTTACTTATACGTAGACCCAAGAAGAATTCATGGGTGGAGCTCGTTTTGTGGGATTTTTGAGTCATGGCCGCCCGCGGCCGTGACTTGCAC</canonical>
            <polymorphic>ATCGGAGAGAGTCGATGGCTCGAACTGCATTTGAGTATGCAGACGGACCCGTTACCCAGATACATACAATGGGAATTATGTTGAAAGAAAATTTTGAGGAACTCATTTATCAGGTCAAACAGGAGAAATCGACAGATGAGAAAAGTGTCGAAAGATTGCGGGTGTTGCAGAAAATCTATGATCATGTTAAGGTTTGTCTTTGATCCCTCATTTTCCACCTTTTTCCAGTTCCTCGTAATGTCTGTCTGCTCTTTTGAAAATCCCATATTCCAGATGATCCGTGAACACGACGACGACAATGACGAAGACAGCCGCGTCGCCCTTGAATGGCGATTCGCCGCCATCGTCGTCGACCGCCTTTGCCTTCTGGTCTTCTCGATTCTCATCATTATCGTATCCATCATCATCGCTTGGCGTGCACCGTATCTCTTTGCCTAGACCCTCTCTGCTTACTATCATTCTTCCAATAAAACCATTCCATTTTCTTTCTTTTTTTCCGWCCACAAATGAGCCGTGTGGGTGGTTGGTGAGTAATCCAAATGCTCCCACACATAAGCTCAAATAGGGCAGCAGCACCCAATTAATGTGCCCTCTTCGTCTTTGAGAAGAAGCTGGAGGCGAAGAATCGTTTTTGGAAATGGGTGCGAATTGGGTGAAATAAGATGAATGAGTCCCGATTCAGAGGGTAGTTGTGGGTCATTAGGTGACTAATGTTCTCGTACAGCTATAAAGGATTTTTATGAGGCTCGAAACGCCAAAAAGGATTTCAGGCTCGGTCGAAAGTCATGAAGTCTGAATTGGTCAAAAGAGATACGGTAGCTAATGGGCTTCTTGTCACATTTACCAGAGCTAACAACCCGACAAAAGGATGAATAGCGGTAAATTAGGTTTACGGTAGTTTCGGGTCAATTTACTTATACGTAGACCCAAGAAGAATTCATGGGTGGAGCTCGTTTTGTGGGATTTTTGAGTCATGGCCGCCCGCGGCCGTGACTTGCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>494 206 183 113 4</canonical_bands>
                <polymorphic_bands>677 206 113 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTAGACCCTCTCTGCTTACTAT</pcr_primer_p1>
		<pcr_primer_p2>GGGACTCATTCATCTTATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CCTAGACCCTCTCTGCTTACTATCATTCTTCCAATAAAACCATTCCATTTTCTTTCTTTTTTTCCGACCACAAATGAGCCGTGTGGGTGGTTGGTGAGTAATCCAAATGCTCCCACACATAAGCTCAAATAGGGCAGCAGCACCCAATTAATGTGCCCTCTTCGTCTTTGAGAAGAAGCTGGAGGCGAAGAATCGTTTTTGGAAATGGGTGCGAATTGGGTGAAATAAGATGAATGAGTCCC</canonical_amplicon>
		<polymorphic_amplicon>CCTAGACCCTCTCTGCTTACTATCATTCTTCCAATAAAACCATTCCATTTTCTTTCTTTTTTTCCGWCCACAAATGAGCCGTGTGGGTGGTTGGTGAGTAATCCAAATGCTCCCACACATAAGCTCAAATAGGGCAGCAGCACCCAATTAATGTGCCCTCTTCGTCTTTGAGAAGAAGCTGGAGGCGAAGAATCGTTTTTGGAAATGGGTGCGAATTGGGTGAAATAAGATGAATGAGTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32312</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>106738</contig_pos>
        <strand>+</strand>
        <context>ACAAATGAGC[C/T]GTGTGGGTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCAATAAAACCATTCCATTTTCTTTCTTTTTTTCCGACCACAAATGAGC</left_flank>
        <right_flank>GTGTGGGTGGTTGGTGAGTAATCCAAATGCTCCCACACATAAGCTCAAAT</right_flank>
        <qual_score>130</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGGCTCGAACTGCATTTGAGTATGCAGACGGACCCGTTACCCAGATACATACAATGGGAATTATGTTGAAAGAAAATTTTGAGGAACTCATTTATCAGGTCAAACAGGAGAAATCGACAGATGAGAAAAGTGTCGAAAGATTGCGGGTGTTGCAGAAAATCTATGATCATGTTAAGGTTTGTCTTTGATCCCTCATTTTCCACCTTTTTCCAGTTCCTCGTAATGTCTGTCTGCTCTTTTGAAAATCCCATATTCCAGATGATCCGTGAACACGACGACGACAATGACGAAGACAGCCGCGTCGCCCTTGAATGGCGATTCGCCGCCATCGTCGTCGACCGCCTTTGCCTTCTGGTCTTCTCGATTCTCATCATTATCGTATCCATCATCATCGCTTGGCGTGCACCGTATCTCTTTGCCTAGACCCTCTCTGCTTACTATCATTCTTCCAATAAAACCATTCCATTTTCTTTCTTTTTTTCCGACCACAAATGAGCCGTGTGGGTGGTTGGTGAGTAATCCAAATGCTCCCACACATAAGCTCAAATAGGGCAGCAGCACCCAATTAATGTGCCCTCTTCGTCTTTGAGAAGAAGCTGGAGGCGAAGAATCGTTTTTGGAAATGGGTGCGAATTGGGTGAAATAAGATGAATGAGTCCCGATTCAGAGGGTAGTTGTGGGTCATTAGGTGACTAATGTTCTCGTACAGCTATAAAGGATTTTTATGAGGCTCGAAACGCCAAAAAGGATTTCAGGCTCGGTCGAAAGTCATGAAGTCTGAATTGGTCAAAAGAGATACGGTAGCTAATGGGCTTCTTGTCACATTTACCAGAGCTAACAACCCGACAAAAGGATGAATAGCGGTAAATTAGGTTTACGGTAGTTTCGGGTCAATTTACTTATACGTAGACCCAAGAAGAATTCATGGGTGGAGCTCGTTTTGTGGGATTTTTGAGTCATGGCCGCCCGCGGCCGTGACTTGCACAACCCGACCTAGA</canonical>
            <polymorphic>GATGGCTCGAACTGCATTTGAGTATGCAGACGGACCCGTTACCCAGATACATACAATGGGAATTATGTTGAAAGAAAATTTTGAGGAACTCATTTATCAGGTCAAACAGGAGAAATCGACAGATGAGAAAAGTGTCGAAAGATTGCGGGTGTTGCAGAAAATCTATGATCATGTTAAGGTTTGTCTTTGATCCCTCATTTTCCACCTTTTTCCAGTTCCTCGTAATGTCTGTCTGCTCTTTTGAAAATCCCATATTCCAGATGATCCGTGAACACGACGACGACAATGACGAAGACAGCCGCGTCGCCCTTGAATGGCGATTCGCCGCCATCGTCGTCGACCGCCTTTGCCTTCTGGTCTTCTCGATTCTCATCATTATCGTATCCATCATCATCGCTTGGCGTGCACCGTATCTCTTTGCCTAGACCCTCTCTGCTTACTATCATTCTTCCAATAAAACCATTCCATTTTCTTTCTTTTTTTCCGACCACAAATGAGCYGTGTGGGTGGTTGGTGAGTAATCCAAATGCTCCCACACATAAGCTCAAATAGGGCAGCAGCACCCAATTAATGTGCCCTCTTCGTCTTTGAGAAGAAGCTGGAGGCGAAGAATCGTTTTTGGAAATGGGTGCGAATTGGGTGAAATAAGATGAATGAGTCCCGATTCAGAGGGTAGTTGTGGGTCATTAGGTGACTAATGTTCTCGTACAGCTATAAAGGATTTTTATGAGGCTCGAAACGCCAAAAAGGATTTCAGGCTCGGTCGAAAGTCATGAAGTCTGAATTGGTCAAAAGAGATACGGTAGCTAATGGGCTTCTTGTCACATTTACCAGAGCTAACAACCCGACAAAAGGATGAATAGCGGTAAATTAGGTTTACGGTAGTTTCGGGTCAATTTACTTATACGTAGACCCAAGAAGAATTCATGGGTGGAGCTCGTTTTGTGGGATTTTTGAGTCATGGCCGCCCGCGGCCGTGACTTGCACAACCCGACCTAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>293 200 113 100 55 48 45 28 26 26 22 21 10 8 5</canonical_bands>
                <polymorphic_bands>293 245 113 100 55 48 28 26 26 22 21 10 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTAGACCCTCTCTGCTTACTAT</pcr_primer_p1>
		<pcr_primer_p2>GGGACTCATTCATCTTATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CCTAGACCCTCTCTGCTTACTATCATTCTTCCAATAAAACCATTCCATTTTCTTTCTTTTTTTCCGACCACAAATGAGCCGTGTGGGTGGTTGGTGAGTAATCCAAATGCTCCCACACATAAGCTCAAATAGGGCAGCAGCACCCAATTAATGTGCCCTCTTCGTCTTTGAGAAGAAGCTGGAGGCGAAGAATCGTTTTTGGAAATGGGTGCGAATTGGGTGAAATAAGATGAATGAGTCCC</canonical_amplicon>
		<polymorphic_amplicon>CCTAGACCCTCTCTGCTTACTATCATTCTTCCAATAAAACCATTCCATTTTCTTTCTTTTTTTCCGACCACAAATGAGCYGTGTGGGTGGTTGGTGAGTAATCCAAATGCTCCCACACATAAGCTCAAATAGGGCAGCAGCACCCAATTAATGTGCCCTCTTCGTCTTTGAGAAGAAGCTGGAGGCGAAGAATCGTTTTTGGAAATGGGTGCGAATTGGGTGAAATAAGATGAATGAGTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32313</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>139053</contig_pos>
        <strand></strand>
        <context>aacgagaatt[T/C]gaaagtatat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GACATCTTTTTGATATCTTTCACAGGAAGTGAGATATATGAACGAGAATT</left_flank>
        <right_flank>GAAAGTATATAGTGGCCTTCTATTAAGGAGCTTACGGCGAATGGCATCTA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAATGTGCCACCATCGAAGTGTGGGAAGGCAGAATTGGATTGGAGGATTTAGAAGACGTCACAACAAAAAGAAGAGGGGAATCTGATATTTGAATGTCTTTTTTTGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCTGTGAACTGATATTAAAAGTTTATTCTGAATAACATGTTGATATGGTTTTCGGGCTTTTTGAAGAGTTTTGTTTTGCATGGAGGTGGTATTCTACAAGAGAGTTGGTATTTTGCAGAAAAAAAGCCGGATATCAGCCTTTCCCTGACATCGAAACGTAAACACCAATAGAAAGCCGCCCTTTACTTTGAGCCCATGCATGTATCTCGGTTCCTGTAAAAGATATCAAAAAGCGGTCAATTGATAAAATGTTTATCATAATATCACCAATATTTTATCTGCTGACATCTTTTTGATATCTTTCACAGGAAGTGAGATATATGAACGAGAATTTGAAAGTATATAGTGGCCTTCTATTAAGGAGCTTACGGCGAATGGCATCTATTAAAGAGTTATGGCACTACCTCAATTTAGAATGAAAAAAGTCATTCCCTGGACATCTCGAAAAAAATTTTGGTCTCAAGATTAACGGGTCCAGACACCCCATAAAAGTGAATTTAGTGAAATAGAGACGTCACACGAGAAAAAAAAACGAGGCCCGTAATTCGATAGAATGCACTTTTTTTTCTCGTCGGAAGAGATGAGGTGTCGAATGGAAGAAAAAAAAACGCATCATAACATAAATCGGGGGATTTCAAATCAAAAAGTTAATGCTTTTGGGCTTCCTCTTCTTCTACTTTTTCTTCTTCTTTGAAACCGGTTGAAGCGAAGATTATTACAACTTTCCTCACACTTTTTTCTGATTGATATCCTCTTTCCGTTGTATTTTTACTTCGCCTGATTTACGATGATTCGCGTGACAGGGATGTTGGGAAGGATAAGGATTTTTAAAGG</canonical>
            <polymorphic>GGAATGTGCCACCATCGAAGTGTGGGAAGGCAGAATTGGATTGGAGGATTTAGAAGACGTCACAACAAAAAGAAGAGGGGAATCTGATATTTGAATGTCTTTTTTTGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCTGTGAACTGATATTAAAAGTTTATTCTGAATAACATGTTGATATGGTTTTCGGGCTTTTTGAAGAGTTTTGTTTTGCATGGAGGTGGTATTCTACAAGAGAGTTGGTATTTTGCAGAAAAAAAGCCGGATATCAGCCTTTCCCTGACATCGAAACGTAAACACCAATAGAAAGCCGCCCTTTACTTTGAGCCCATGCATGTATCTCGGTTCCTGTAAAAGATATCAAAAAGCGGTCAATTGATAAAATGTTTATCATAATATCACCAATATTTTATCTGCTGACATCTTTTTGATATCTTTCACAGGAAGTGAGATATATGAACGAGAATTYGAAAGTATATAGTGGCCTTCTATTAAGGAGCTTACGGCGAATGGCATCTATTAAAGAGTTATGGCACTACCTCAATTTAGAATGAAAAAAGTCATTCCCTGGACATCTCGAAAAAAATTTTGGTCTCAAGATTAACGGGTCCAGACACCCCATAAAAGTGAATTTAGTGAAATAGAGACGTCACACGAGAAAAAAAAACGAGGCCCGTAATTCGATAGAATGCACTTTTTTTTCTCGTCGGAAGAGATGAGGTGTCGAATGGAAGAAAAAAAAACGCATCATAACATAAATCGGGGGATTTCAAATCAAAAAGTTAATGCTTTTGGGCTTCCTCTTCTTCTACTTTTTCTTCTTCTTTGAAACCGGTTGAAGCGAAGATTATTACAACTTTCCTCACACTTTTTTCTGATTGATATCCTCTTTCCGTTGTATTTTTACTTCGCCTGATTTACGATGATTCGCGTGACAGGGATGTTGGGAAGGATAAGGATTTTTAAAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>495 340 120 45</canonical_bands>
                <polymorphic_bands>615 340 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATATCAGCCTTTCCCTGAC</pcr_primer_p1>
		<pcr_primer_p2>TCTAAATTGAGGTAGTGCCATAA</pcr_primer_p2>
		<pcr_amplicon_size>286</pcr_amplicon_size>
		<canonical_amplicon>GATATCAGCCTTTCCCTGACATCGAAACGTAAACACCAATAGAAAGCCGCCCTTTACTTTGAGCCCATGCATGTATCTCGGTTCCTGTAAAAGATATCAAAAAGCGGTCAATTGATAAAATGTTTATCATAATATCACCAATATTTTATCTGCTGACATCTTTTTGATATCTTTCACAGGAAGTGAGATATATGAACGAGAATTTGAAAGTATATAGTGGCCTTCTATTAAGGAGCTTACGGCGAATGGCATCTATTAAAGAGTTATGGCACTACCTCAATTTAGA</canonical_amplicon>
		<polymorphic_amplicon>GATATCAGCCTTTCCCTGACATCGAAACGTAAACACCAATAGAAAGCCGCCCTTTACTTTGAGCCCATGCATGTATCTCGGTTCCTGTAAAAGATATCAAAAAGCGGTCAATTGATAAAATGTTTATCATAATATCACCAATATTTTATCTGCTGACATCTTTTTGATATCTTTCACAGGAAGTGAGATATATGAACGAGAATTYGAAAGTATATAGTGGCCTTCTATTAAGGAGCTTACGGCGAATGGCATCTATTAAAGAGTTATGGCACTACCTCAATTTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32314</snp_id>
        <super_contig>c007301143.Contig1</super_contig>
        <contig_pos>139070</contig_pos>
        <strand></strand>
        <context>atatagtggc[C/G]ttctattaag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTCACAGGAAGTGAGATATATGAACGAGAATTTGAAAGTATATAGTGGC</left_flank>
        <right_flank>TTCTATTAAGGAGCTTACGGCGAATGGCATCTATTAAAGAGTTATGGCAC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTGTGGGAAGGCAGAATTGGATTGGAGGATTTAGAAGACGTCACAACAAAAAGAAGAGGGGAATCTGATATTTGAATGTCTTTTTTTGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCTGTGAACTGATATTAAAAGTTTATTCTGAATAACATGTTGATATGGTTTTCGGGCTTTTTGAAGAGTTTTGTTTTGCATGGAGGTGGTATTCTACAAGAGAGTTGGTATTTTGCAGAAAAAAAGCCGGATATCAGCCTTTCCCTGACATCGAAACGTAAACACCAATAGAAAGCCGCCCTTTACTTTGAGCCCATGCATGTATCTCGGTTCCTGTAAAAGATATCAAAAAGCGGTCAATTGATAAAATGTTTATCATAATATCACCAATATTTTATCTGCTGACATCTTTTTGATATCTTTCACAGGAAGTGAGATATATGAACGAGAATTTGAAAGTATATAGTGGCCTTCTATTAAGGAGCTTACGGCGAATGGCATCTATTAAAGAGTTATGGCACTACCTCAATTTAGAATGAAAAAAGTCATTCCCTGGACATCTCGAAAAAAATTTTGGTCTCAAGATTAACGGGTCCAGACACCCCATAAAAGTGAATTTAGTGAAATAGAGACGTCACACGAGAAAAAAAAACGAGGCCCGTAATTCGATAGAATGCACTTTTTTTTCTCGTCGGAAGAGATGAGGTGTCGAATGGAAGAAAAAAAAACGCATCATAACATAAATCGGGGGATTTCAAATCAAAAAGTTAATGCTTTTGGGCTTCCTCTTCTTCTACTTTTTCTTCTTCTTTGAAACCGGTTGAAGCGAAGATTATTACAACTTTCCTCACACTTTTTTCTGATTGATATCCTCTTTCCGTTGTATTTTTACTTCGCCTGATTTACGATGATTCGCGTGACAGGGATGTTGGGAAGGATAAGGATTTTTAAAGGAGCATAAAAATTTTTTT</canonical>
            <polymorphic>AAGTGTGGGAAGGCAGAATTGGATTGGAGGATTTAGAAGACGTCACAACAAAAAGAAGAGGGGAATCTGATATTTGAATGTCTTTTTTTGAGAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCTGTGAACTGATATTAAAAGTTTATTCTGAATAACATGTTGATATGGTTTTCGGGCTTTTTGAAGAGTTTTGTTTTGCATGGAGGTGGTATTCTACAAGAGAGTTGGTATTTTGCAGAAAAAAAGCCGGATATCAGCCTTTCCCTGACATCGAAACGTAAACACCAATAGAAAGCCGCCCTTTACTTTGAGCCCATGCATGTATCTCGGTTCCTGTAAAAGATATCAAAAAGCGGTCAATTGATAAAATGTTTATCATAATATCACCAATATTTTATCTGCTGACATCTTTTTGATATCTTTCACAGGAAGTGAGATATATGAACGAGAATTTGAAAGTATATAGTGGCSTTCTATTAAGGAGCTTACGGCGAATGGCATCTATTAAAGAGTTATGGCACTACCTCAATTTAGAATGAAAAAAGTCATTCCCTGGACATCTCGAAAAAAATTTTGGTCTCAAGATTAACGGGTCCAGACACCCCATAAAAGTGAATTTAGTGAAATAGAGACGTCACACGAGAAAAAAAAACGAGGCCCGTAATTCGATAGAATGCACTTTTTTTTCTCGTCGGAAGAGATGAGGTGTCGAATGGAAGAAAAAAAAACGCATCATAACATAAATCGGGGGATTTCAAATCAAAAAGTTAATGCTTTTGGGCTTCCTCTTCTTCTACTTTTTCTTCTTCTTTGAAACCGGTTGAAGCGAAGATTATTACAACTTTCCTCACACTTTTTTCTGATTGATATCCTCTTTCCGTTGTATTTTTACTTCGCCTGATTTACGATGATTCGCGTGACAGGGATGTTGGGAAGGATAAGGATTTTTAAAGGAGCATAAAAATTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>498 314 188</canonical_bands>
                <polymorphic_bands>686 314</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>190 173 157 150 124 70 55 38 17 15 11</canonical_bands>
                <polymorphic_bands>190 173 172 150 124 70 55 38 17 11</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATATCAGCCTTTCCCTGAC</pcr_primer_p1>
		<pcr_primer_p2>TCTAAATTGAGGTAGTGCCATAA</pcr_primer_p2>
		<pcr_amplicon_size>286</pcr_amplicon_size>
		<canonical_amplicon>GATATCAGCCTTTCCCTGACATCGAAACGTAAACACCAATAGAAAGCCGCCCTTTACTTTGAGCCCATGCATGTATCTCGGTTCCTGTAAAAGATATCAAAAAGCGGTCAATTGATAAAATGTTTATCATAATATCACCAATATTTTATCTGCTGACATCTTTTTGATATCTTTCACAGGAAGTGAGATATATGAACGAGAATTTGAAAGTATATAGTGGCCTTCTATTAAGGAGCTTACGGCGAATGGCATCTATTAAAGAGTTATGGCACTACCTCAATTTAGA</canonical_amplicon>
		<polymorphic_amplicon>GATATCAGCCTTTCCCTGACATCGAAACGTAAACACCAATAGAAAGCCGCCCTTTACTTTGAGCCCATGCATGTATCTCGGTTCCTGTAAAAGATATCAAAAAGCGGTCAATTGATAAAATGTTTATCATAATATCACCAATATTTTATCTGCTGACATCTTTTTGATATCTTTCACAGGAAGTGAGATATATGAACGAGAATTTGAAAGTATATAGTGGCSTTCTATTAAGGAGCTTACGGCGAATGGCATCTATTAAAGAGTTATGGCACTACCTCAATTTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32323</snp_id>
        <super_contig>c007401546.Contig1</super_contig>
        <contig_pos>2237</contig_pos>
        <strand>+</strand>
        <context>ATTCTCAAAC[A/T]TTCTGACTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATAAAACATGAGCTCGAAAAACGCTAAGGCCTGAAAACCATTCTCAAAC</left_flank>
        <right_flank>TTCTGACTGACAGTATACTGCTGAAGCCGTAAACTGGTATACCAGGATAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAATTTGTGCTGAGCACATGTTGTCATGGAAACGAACGAAAACTGAGCCAGAACACACTAATACCATTCTTTCCCACACCTTAGCTGGGAATGAGCATGTTGAAACACTGCTCACGCTGAACACCGGGGAAGGAAAATAGTAATCCAGTTTTGAGTCTACAAATCACATCAGACAGATAATGGGGTCAAATTGTGCTCGCCAGATTCTTGCAAATAGAAAACTACGGAGAATAAGTCATGAGAACACCAGTGAGATCAGAATTTATGTTTTAGAAATTTTACACGGATATTAACTATATTTCTACATAGGATTCTCTAAATTTTAGTTATAAAGACATATTTCTTGGTTCCTGTGAGAGACATACAAAAGTTGTCAGCTGATAAATTCTTGGTCGTATAAAAATTAAAATTTCTAACGTTTTTTCAATTTTTGAATTTTTGAAGCAAAATAAAACATGAGCTCGAAAAACGCTAAGGCCTGAAAACCATTCTCAAACATTCTGACTGACAGTATACTGCTGAAGCCGTAAACTGGTATACCAGGATACCACCCAATACAGTATACATACATCATAAATGACAGGTCACTGTATACTGAGAGTATACCTTTAACCCTGTACTGGAAGGGAACCCACACTATGACCAGAAAACAAGACTATAACCGGATGTAACTGACAGCCGGATCTAACTAAATGTACCACGTTTTAATAGAAAAATAATGATAAAAACTGAAGAAGGAACGAAAAGAGATCCATCTCCATTGATGATGATTTTTCTTGTTTTTTTTAATATAAAAATTTCCCTGTCAGTGAGCAAATTTATTAACGGGTTCTCTACTTTTCTGGATTGAAAATTGATGTTTTTGTCATAGTCGCAAAAAGCCGGTAGACGAATATTCTTGGTCCGGCCCGCCTACCACTGTTGAAAAATTTCCAATGAAAAATTGGATAATTTTTTTGAATAAAAAAAGAAAAAAGGTTACATTTTTAAACAAAATT</canonical>
            <polymorphic>ACCAATTTGTGCTGAGCACATGTTGTCATGGAAACGAACGAAAACTGAGCCAGAACACACTAATACCATTCTTTCCCACACCTTAGCTGGGAATGAGCATGTTGAAACACTGCTCACGCTGAACACCGGGGAAGGAAAATAGTAATCCAGTTTTGAGTCTACAAATCACATCAGACAGATAATGGGGTCAAATTGTGCTCGCCAGATTCTTGCAAATAGAAAACTACGGAGAATAAGTCATGAGAACACCAGTGAGATCAGAATTTATGTTTTAGAAATTTTACACGGATATTAACTATATTTCTACATAGGATTCTCTAAATTTTAGTTATAAAGACATATTTCTTGGTTCCTGTGAGAGACATACAAAAGTTGTCAGCTGATAAATTCTTGGTCGTATAAAAATTAAAATTTCTAACGTTTTTTCAATTTTTGAATTTTTGAAGCAAAATAAAACATGAGCTCGAAAAACGCTAAGGCCTGAAAACCATTCTCAAACWTTCTGACTGACAGTATACTGCTGAAGCCGTAAACTGGTATACCAGGATACCACCCAATACAGTATACATACATCATAAATGACAGGTCACTGTATACTGAGAGTATACCTTTAACCCTGTACTGGAAGGGAACCCACACTATGACCAGAAAACAAGACTATAACCGGATGTAACTGACAGCCGGATCTAACTAAATGTACCACGTTTTAATAGAAAAATAATGATAAAAACTGAAGAAGGAACGAAAAGAGATCCATCTCCATTGATGATGATTTTTCTTGTTTTTTTTAATATAAAAATTTCCCTGTCAGTGAGCAAATTTATTAACGGGTTCTCTACTTTTCTGGATTGAAAATTGATGTTTTTGTCATAGTCGCAAAAAGCCGGTAGACGAATATTCTTGGTCCGGCCCGCCTACCACTGTTGAAAAATTTCCAATGAAAAATTGGATAATTTTTTTGAATAAAAAAAGAAAAAAGGTTACATTTTTAAACAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATAAAACATGAGCTCGAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTTAGTTAGATCCGGCTGTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAATAAAACATGAGCTCGAAAAACGCTAAGGCCTGAAAACCATTCTCAAACATTCTGACTGACAGTATACTGCTGAAGCCGTAAACTGGTATACCAGGATACCACCCAATACAGTATACATACATCATAAATGACAGGTCACTGTATACTGAGAGTATACCTTTAACCCTGTACTGGAAGGGAACCCACACTATGACCAGAAAACAAGACTATAACCGGATGTAACTGACAGCCGGATCTAACTAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAATAAAACATGAGCTCGAAAAACGCTAAGGCCTGAAAACCATTCTCAAACWTTCTGACTGACAGTATACTGCTGAAGCCGTAAACTGGTATACCAGGATACCACCCAATACAGTATACATACATCATAAATGACAGGTCACTGTATACTGAGAGTATACCTTTAACCCTGTACTGGAAGGGAACCCACACTATGACCAGAAAACAAGACTATAACCGGATGTAACTGACAGCCGGATCTAACTAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32324</snp_id>
        <super_contig>c007401546.Contig1</super_contig>
        <contig_pos>2338</contig_pos>
        <strand>+</strand>
        <context>TGTATACTGA[G/T]AGTATACCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CACCCAATACAGTATACATACATCATAAATGACAGGTCACTGTATACTGA</left_flank>
        <right_flank>AGTATACCTTTAACCCTGTACTGGAAGGGAACCCACACTATGACCAGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAAACACTGCTCACGCTGAACACCGGGGAAGGAAAATAGTAATCCAGTTTTGAGTCTACAAATCACATCAGACAGATAATGGGGTCAAATTGTGCTCGCCAGATTCTTGCAAATAGAAAACTACGGAGAATAAGTCATGAGAACACCAGTGAGATCAGAATTTATGTTTTAGAAATTTTACACGGATATTAACTATATTTCTACATAGGATTCTCTAAATTTTAGTTATAAAGACATATTTCTTGGTTCCTGTGAGAGACATACAAAAGTTGTCAGCTGATAAATTCTTGGTCGTATAAAAATTAAAATTTCTAACGTTTTTTCAATTTTTGAATTTTTGAAGCAAAATAAAACATGAGCTCGAAAAACGCTAAGGCCTGAAAACCATTCTCAAACATTCTGACTGACAGTATACTGCTGAAGCCGTAAACTGGTATACCAGGATACCACCCAATACAGTATACATACATCATAAATGACAGGTCACTGTATACTGAGAGTATACCTTTAACCCTGTACTGGAAGGGAACCCACACTATGACCAGAAAACAAGACTATAACCGGATGTAACTGACAGCCGGATCTAACTAAATGTACCACGTTTTAATAGAAAAATAATGATAAAAACTGAAGAAGGAACGAAAAGAGATCCATCTCCATTGATGATGATTTTTCTTGTTTTTTTTAATATAAAAATTTCCCTGTCAGTGAGCAAATTTATTAACGGGTTCTCTACTTTTCTGGATTGAAAATTGATGTTTTTGTCATAGTCGCAAAAAGCCGGTAGACGAATATTCTTGGTCCGGCCCGCCTACCACTGTTGAAAAATTTCCAATGAAAAATTGGATAATTTTTTTGAATAAAAAAAGAAAAAAGGTTACATTTTTAAACAAAATTAACAAAATAGAAAGTAGTCAAAAATAGGTCGTTTTTGTAAATATTTTTGAAAAAATTTCAAAATTTTTGAAAAAAAAATCAAAAAAAATCAGCGTGTGTAC</canonical>
            <polymorphic>TTGAAACACTGCTCACGCTGAACACCGGGGAAGGAAAATAGTAATCCAGTTTTGAGTCTACAAATCACATCAGACAGATAATGGGGTCAAATTGTGCTCGCCAGATTCTTGCAAATAGAAAACTACGGAGAATAAGTCATGAGAACACCAGTGAGATCAGAATTTATGTTTTAGAAATTTTACACGGATATTAACTATATTTCTACATAGGATTCTCTAAATTTTAGTTATAAAGACATATTTCTTGGTTCCTGTGAGAGACATACAAAAGTTGTCAGCTGATAAATTCTTGGTCGTATAAAAATTAAAATTTCTAACGTTTTTTCAATTTTTGAATTTTTGAAGCAAAATAAAACATGAGCTCGAAAAACGCTAAGGCCTGAAAACCATTCTCAAACATTCTGACTGACAGTATACTGCTGAAGCCGTAAACTGGTATACCAGGATACCACCCAATACAGTATACATACATCATAAATGACAGGTCACTGTATACTGAKAGTATACCTTTAACCCTGTACTGGAAGGGAACCCACACTATGACCAGAAAACAAGACTATAACCGGATGTAACTGACAGCCGGATCTAACTAAATGTACCACGTTTTAATAGAAAAATAATGATAAAAACTGAAGAAGGAACGAAAAGAGATCCATCTCCATTGATGATGATTTTTCTTGTTTTTTTTAATATAAAAATTTCCCTGTCAGTGAGCAAATTTATTAACGGGTTCTCTACTTTTCTGGATTGAAAATTGATGTTTTTGTCATAGTCGCAAAAAGCCGGTAGACGAATATTCTTGGTCCGGCCCGCCTACCACTGTTGAAAAATTTCCAATGAAAAATTGGATAATTTTTTTGAATAAAAAAAGAAAAAAGGTTACATTTTTAAACAAAATTAACAAAATAGAAAGTAGTCAAAAATAGGTCGTTTTTGTAAATATTTTTGAAAAAATTTCAAAATTTTTGAAAAAAAAATCAAAAAAAATCAGCGTGTGTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 373 123</canonical_bands>
                <polymorphic_bands>627 373</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAAACATGAGCTCGAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTAGTTAGATCCGGCTGTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATAAAACATGAGCTCGAAAAACGCTAAGGCCTGAAAACCATTCTCAAACATTCTGACTGACAGTATACTGCTGAAGCCGTAAACTGGTATACCAGGATACCACCCAATACAGTATACATACATCATAAATGACAGGTCACTGTATACTGAGAGTATACCTTTAACCCTGTACTGGAAGGGAACCCACACTATGACCAGAAAACAAGACTATAACCGGATGTAACTGACAGCCGGATCTAACTAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATAAAACATGAGCTCGAAAAACGCTAAGGCCTGAAAACCATTCTCAAACATTCTGACTGACAGTATACTGCTGAAGCCGTAAACTGGTATACCAGGATACCACCCAATACAGTATACATACATCATAAATGACAGGTCACTGTATACTGAKAGTATACCTTTAACCCTGTACTGGAAGGGAACCCACACTATGACCAGAAAACAAGACTATAACCGGATGTAACTGACAGCCGGATCTAACTAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32325</snp_id>
        <super_contig>c007401546.Contig1</super_contig>
        <contig_pos>2407</contig_pos>
        <strand>+</strand>
        <context>ATAACCGGAT[G/T]TAACTGACAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TACTGGAAGGGAACCCACACTATGACCAGAAAACAAGACTATAACCGGAT</left_flank>
        <right_flank>TAACTGACAGCCGGATCTAACTAAATGTACCACGTTTTAATAGAAAAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGACAGATAATGGGGTCAAATTGTGCTCGCCAGATTCTTGCAAATAGAAAACTACGGAGAATAAGTCATGAGAACACCAGTGAGATCAGAATTTATGTTTTAGAAATTTTACACGGATATTAACTATATTTCTACATAGGATTCTCTAAATTTTAGTTATAAAGACATATTTCTTGGTTCCTGTGAGAGACATACAAAAGTTGTCAGCTGATAAATTCTTGGTCGTATAAAAATTAAAATTTCTAACGTTTTTTCAATTTTTGAATTTTTGAAGCAAAATAAAACATGAGCTCGAAAAACGCTAAGGCCTGAAAACCATTCTCAAACATTCTGACTGACAGTATACTGCTGAAGCCGTAAACTGGTATACCAGGATACCACCCAATACAGTATACATACATCATAAATGACAGGTCACTGTATACTGAGAGTATACCTTTAACCCTGTACTGGAAGGGAACCCACACTATGACCAGAAAACAAGACTATAACCGGATGTAACTGACAGCCGGATCTAACTAAATGTACCACGTTTTAATAGAAAAATAATGATAAAAACTGAAGAAGGAACGAAAAGAGATCCATCTCCATTGATGATGATTTTTCTTGTTTTTTTTAATATAAAAATTTCCCTGTCAGTGAGCAAATTTATTAACGGGTTCTCTACTTTTCTGGATTGAAAATTGATGTTTTTGTCATAGTCGCAAAAAGCCGGTAGACGAATATTCTTGGTCCGGCCCGCCTACCACTGTTGAAAAATTTCCAATGAAAAATTGGATAATTTTTTTGAATAAAAAAAGAAAAAAGGTTACATTTTTAAACAAAATTAACAAAATAGAAAGTAGTCAAAAATAGGTCGTTTTTGTAAATATTTTTGAAAAAATTTCAAAATTTTTGAAAAAAAAATCAAAAAAAATCAGCGTGTGTACAGACCCCGGCCCGGCCCGTCAAAATTCTCGACGGGCCGACCCAAGATTTTGCAACTATGGTTTTTGGAA</canonical>
            <polymorphic>TCAGACAGATAATGGGGTCAAATTGTGCTCGCCAGATTCTTGCAAATAGAAAACTACGGAGAATAAGTCATGAGAACACCAGTGAGATCAGAATTTATGTTTTAGAAATTTTACACGGATATTAACTATATTTCTACATAGGATTCTCTAAATTTTAGTTATAAAGACATATTTCTTGGTTCCTGTGAGAGACATACAAAAGTTGTCAGCTGATAAATTCTTGGTCGTATAAAAATTAAAATTTCTAACGTTTTTTCAATTTTTGAATTTTTGAAGCAAAATAAAACATGAGCTCGAAAAACGCTAAGGCCTGAAAACCATTCTCAAACATTCTGACTGACAGTATACTGCTGAAGCCGTAAACTGGTATACCAGGATACCACCCAATACAGTATACATACATCATAAATGACAGGTCACTGTATACTGAGAGTATACCTTTAACCCTGTACTGGAAGGGAACCCACACTATGACCAGAAAACAAGACTATAACCGGATKTAACTGACAGCCGGATCTAACTAAATGTACCACGTTTTAATAGAAAAATAATGATAAAAACTGAAGAAGGAACGAAAAGAGATCCATCTCCATTGATGATGATTTTTCTTGTTTTTTTTAATATAAAAATTTCCCTGTCAGTGAGCAAATTTATTAACGGGTTCTCTACTTTTCTGGATTGAAAATTGATGTTTTTGTCATAGTCGCAAAAAGCCGGTAGACGAATATTCTTGGTCCGGCCCGCCTACCACTGTTGAAAAATTTCCAATGAAAAATTGGATAATTTTTTTGAATAAAAAAAGAAAAAAGGTTACATTTTTAAACAAAATTAACAAAATAGAAAGTAGTCAAAAATAGGTCGTTTTTGTAAATATTTTTGAAAAAATTTCAAAATTTTTGAAAAAAAAATCAAAAAAAATCAGCGTGTGTACAGACCCCGGCCCGGCCCGTCAAAATTCTCGACGGGCCGACCCAAGATTTTGCAACTATGGTTTTTGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>415 310 191 84</canonical_bands>
                <polymorphic_bands>415 394 191</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATACTGCTGAAGCCGTAAACT</pcr_primer_p1>
		<pcr_primer_p2>TTCCTTCTTCAGTTTTTATCATTA</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>TATACTGCTGAAGCCGTAAACTGGTATACCAGGATACCACCCAATACAGTATACATACATCATAAATGACAGGTCACTGTATACTGAGAGTATACCTTTAACCCTGTACTGGAAGGGAACCCACACTATGACCAGAAAACAAGACTATAACCGGATGTAACTGACAGCCGGATCTAACTAAATGTACCACGTTTTAATAGAAAAATAATGATAAAAACTGAAGAAGGAA</canonical_amplicon>
		<polymorphic_amplicon>TATACTGCTGAAGCCGTAAACTGGTATACCAGGATACCACCCAATACAGTATACATACATCATAAATGACAGGTCACTGTATACTGAGAGTATACCTTTAACCCTGTACTGGAAGGGAACCCACACTATGACCAGAAAACAAGACTATAACCGGATKTAACTGACAGCCGGATCTAACTAAATGTACCACGTTTTAATAGAAAAATAATGATAAAAACTGAAGAAGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32326</snp_id>
        <super_contig>c007401546.Contig1</super_contig>
        <contig_pos>2446</contig_pos>
        <strand>+</strand>
        <context>ACCACGTTTT[A/G]ATAGAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATAACCGGATGTAACTGACAGCCGGATCTAACTAAATGTACCACGTTTT</left_flank>
        <right_flank>ATAGAAAAATAATGATAAAAACTGAAGAAGGAACGAAAAGAGATCCATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCAAATAGAAAACTACGGAGAATAAGTCATGAGAACACCAGTGAGATCAGAATTTATGTTTTAGAAATTTTACACGGATATTAACTATATTTCTACATAGGATTCTCTAAATTTTAGTTATAAAGACATATTTCTTGGTTCCTGTGAGAGACATACAAAAGTTGTCAGCTGATAAATTCTTGGTCGTATAAAAATTAAAATTTCTAACGTTTTTTCAATTTTTGAATTTTTGAAGCAAAATAAAACATGAGCTCGAAAAACGCTAAGGCCTGAAAACCATTCTCAAACATTCTGACTGACAGTATACTGCTGAAGCCGTAAACTGGTATACCAGGATACCACCCAATACAGTATACATACATCATAAATGACAGGTCACTGTATACTGAGAGTATACCTTTAACCCTGTACTGGAAGGGAACCCACACTATGACCAGAAAACAAGACTATAACCGGATGTAACTGACAGCCGGATCTAACTAAATGTACCACGTTTTAATAGAAAAATAATGATAAAAACTGAAGAAGGAACGAAAAGAGATCCATCTCCATTGATGATGATTTTTCTTGTTTTTTTTAATATAAAAATTTCCCTGTCAGTGAGCAAATTTATTAACGGGTTCTCTACTTTTCTGGATTGAAAATTGATGTTTTTGTCATAGTCGCAAAAAGCCGGTAGACGAATATTCTTGGTCCGGCCCGCCTACCACTGTTGAAAAATTTCCAATGAAAAATTGGATAATTTTTTTGAATAAAAAAAGAAAAAAGGTTACATTTTTAAACAAAATTAACAAAATAGAAAGTAGTCAAAAATAGGTCGTTTTTGTAAATATTTTTGAAAAAATTTCAAAATTTTTGAAAAAAAAATCAAAAAAAATCAGCGTGTGTACAGACCCCGGCCCGGCCCGTCAAAATTCTCGACGGGCCGACCCAAGATTTTGCAACTATGGTTTTTGGAAAAACTTCCAATTTTGAAAAATCTGACAGTTTCAAAAACG</canonical>
            <polymorphic>TTGCAAATAGAAAACTACGGAGAATAAGTCATGAGAACACCAGTGAGATCAGAATTTATGTTTTAGAAATTTTACACGGATATTAACTATATTTCTACATAGGATTCTCTAAATTTTAGTTATAAAGACATATTTCTTGGTTCCTGTGAGAGACATACAAAAGTTGTCAGCTGATAAATTCTTGGTCGTATAAAAATTAAAATTTCTAACGTTTTTTCAATTTTTGAATTTTTGAAGCAAAATAAAACATGAGCTCGAAAAACGCTAAGGCCTGAAAACCATTCTCAAACATTCTGACTGACAGTATACTGCTGAAGCCGTAAACTGGTATACCAGGATACCACCCAATACAGTATACATACATCATAAATGACAGGTCACTGTATACTGAGAGTATACCTTTAACCCTGTACTGGAAGGGAACCCACACTATGACCAGAAAACAAGACTATAACCGGATGTAACTGACAGCCGGATCTAACTAAATGTACCACGTTTTRATAGAAAAATAATGATAAAAACTGAAGAAGGAACGAAAAGAGATCCATCTCCATTGATGATGATTTTTCTTGTTTTTTTTAATATAAAAATTTCCCTGTCAGTGAGCAAATTTATTAACGGGTTCTCTACTTTTCTGGATTGAAAATTGATGTTTTTGTCATAGTCGCAAAAAGCCGGTAGACGAATATTCTTGGTCCGGCCCGCCTACCACTGTTGAAAAATTTCCAATGAAAAATTGGATAATTTTTTTGAATAAAAAAAGAAAAAAGGTTACATTTTTAAACAAAATTAACAAAATAGAAAGTAGTCAAAAATAGGTCGTTTTTGTAAATATTTTTGAAAAAATTTCAAAATTTTTGAAAAAAAAATCAAAAAAAATCAGCGTGTGTACAGACCCCGGCCCGGCCCGTCAAAATTCTCGACGGGCCGACCCAAGATTTTGCAACTATGGTTTTTGGAAAAACTTCCAATTTTGAAAAATCTGACAGTTTCAAAAACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>210 205 165 114 96 83 81 36 10</canonical_bands>
                <polymorphic_bands>210 205 177 165 114 83 36 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACACTATGACCAGAAAACAAGAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGCGACTATGACAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACACTATGACCAGAAAACAAGACTATAACCGGATGTAACTGACAGCCGGATCTAACTAAATGTACCACGTTTTAATAGAAAAATAATGATAAAAACTGAAGAAGGAACGAAAAGAGATCCATCTCCATTGATGATGATTTTTCTTGTTTTTTTTAATATAAAAATTTCCCTGTCAGTGAGCAAATTTATTAACGGGTTCTCTACTTTTCTGGATTGAAAATTGATGTTTTTGTCATAGTCGCAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACACTATGACCAGAAAACAAGACTATAACCGGATGTAACTGACAGCCGGATCTAACTAAATGTACCACGTTTTRATAGAAAAATAATGATAAAAACTGAAGAAGGAACGAAAAGAGATCCATCTCCATTGATGATGATTTTTCTTGTTTTTTTTAATATAAAAATTTCCCTGTCAGTGAGCAAATTTATTAACGGGTTCTCTACTTTTCTGGATTGAAAATTGATGTTTTTGTCATAGTCGCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32327</snp_id>
        <super_contig>c007401546.Contig1</super_contig>
        <contig_pos>2480</contig_pos>
        <strand>+</strand>
        <context>GAAGAAGGAA[A/C]GAAAAGAGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATGTACCACGTTTTAATAGAAAAATAATGATAAAAACTGAAGAAGGAA</left_flank>
        <right_flank>GAAAAGAGATCCATCTCCATTGATGATGATTTTTCTTGTTTTTTTTAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACACCAGTGAGATCAGAATTTATGTTTTAGAAATTTTACACGGATATTAACTATATTTCTACATAGGATTCTCTAAATTTTAGTTATAAAGACATATTTCTTGGTTCCTGTGAGAGACATACAAAAGTTGTCAGCTGATAAATTCTTGGTCGTATAAAAATTAAAATTTCTAACGTTTTTTCAATTTTTGAATTTTTGAAGCAAAATAAAACATGAGCTCGAAAAACGCTAAGGCCTGAAAACCATTCTCAAACATTCTGACTGACAGTATACTGCTGAAGCCGTAAACTGGTATACCAGGATACCACCCAATACAGTATACATACATCATAAATGACAGGTCACTGTATACTGAGAGTATACCTTTAACCCTGTACTGGAAGGGAACCCACACTATGACCAGAAAACAAGACTATAACCGGATGTAACTGACAGCCGGATCTAACTAAATGTACCACGTTTTAATAGAAAAATAATGATAAAAACTGAAGAAGGAACGAAAAGAGATCCATCTCCATTGATGATGATTTTTCTTGTTTTTTTTAATATAAAAATTTCCCTGTCAGTGAGCAAATTTATTAACGGGTTCTCTACTTTTCTGGATTGAAAATTGATGTTTTTGTCATAGTCGCAAAAAGCCGGTAGACGAATATTCTTGGTCCGGCCCGCCTACCACTGTTGAAAAATTTCCAATGAAAAATTGGATAATTTTTTTGAATAAAAAAAGAAAAAAGGTTACATTTTTAAACAAAATTAACAAAATAGAAAGTAGTCAAAAATAGGTCGTTTTTGTAAATATTTTTGAAAAAATTTCAAAATTTTTGAAAAAAAAATCAAAAAAAATCAGCGTGTGTACAGACCCCGGCCCGGCCCGTCAAAATTCTCGACGGGCCGACCCAAGATTTTGCAACTATGGTTTTTGGAAAAACTTCCAATTTTGAAAAATCTGACAGTTTCAAAAACGCTAGAATATTTTATACAAGTTCATATGTTTTTAC</canonical>
            <polymorphic>GAACACCAGTGAGATCAGAATTTATGTTTTAGAAATTTTACACGGATATTAACTATATTTCTACATAGGATTCTCTAAATTTTAGTTATAAAGACATATTTCTTGGTTCCTGTGAGAGACATACAAAAGTTGTCAGCTGATAAATTCTTGGTCGTATAAAAATTAAAATTTCTAACGTTTTTTCAATTTTTGAATTTTTGAAGCAAAATAAAACATGAGCTCGAAAAACGCTAAGGCCTGAAAACCATTCTCAAACATTCTGACTGACAGTATACTGCTGAAGCCGTAAACTGGTATACCAGGATACCACCCAATACAGTATACATACATCATAAATGACAGGTCACTGTATACTGAGAGTATACCTTTAACCCTGTACTGGAAGGGAACCCACACTATGACCAGAAAACAAGACTATAACCGGATGTAACTGACAGCCGGATCTAACTAAATGTACCACGTTTTAATAGAAAAATAATGATAAAAACTGAAGAAGGAAMGAAAAGAGATCCATCTCCATTGATGATGATTTTTCTTGTTTTTTTTAATATAAAAATTTCCCTGTCAGTGAGCAAATTTATTAACGGGTTCTCTACTTTTCTGGATTGAAAATTGATGTTTTTGTCATAGTCGCAAAAAGCCGGTAGACGAATATTCTTGGTCCGGCCCGCCTACCACTGTTGAAAAATTTCCAATGAAAAATTGGATAATTTTTTTGAATAAAAAAAGAAAAAAGGTTACATTTTTAAACAAAATTAACAAAATAGAAAGTAGTCAAAAATAGGTCGTTTTTGTAAATATTTTTGAAAAAATTTCAAAATTTTTGAAAAAAAAATCAAAAAAAATCAGCGTGTGTACAGACCCCGGCCCGGCCCGTCAAAATTCTCGACGGGCCGACCCAAGATTTTGCAACTATGGTTTTTGGAAAAACTTCCAATTTTGAAAAATCTGACAGTTTCAAAAACGCTAGAATATTTTATACAAGTTCATATGTTTTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACTATGACCAGAAAACAAGAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGCGACTATGACAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACACTATGACCAGAAAACAAGACTATAACCGGATGTAACTGACAGCCGGATCTAACTAAATGTACCACGTTTTAATAGAAAAATAATGATAAAAACTGAAGAAGGAACGAAAAGAGATCCATCTCCATTGATGATGATTTTTCTTGTTTTTTTTAATATAAAAATTTCCCTGTCAGTGAGCAAATTTATTAACGGGTTCTCTACTTTTCTGGATTGAAAATTGATGTTTTTGTCATAGTCGCAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACACTATGACCAGAAAACAAGACTATAACCGGATGTAACTGACAGCCGGATCTAACTAAATGTACCACGTTTTAATAGAAAAATAATGATAAAAACTGAAGAAGGAAMGAAAAGAGATCCATCTCCATTGATGATGATTTTTCTTGTTTTTTTTAATATAAAAATTTCCCTGTCAGTGAGCAAATTTATTAACGGGTTCTCTACTTTTCTGGATTGAAAATTGATGTTTTTGTCATAGTCGCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32328</snp_id>
        <super_contig>c007401546.Contig1</super_contig>
        <contig_pos>2510</contig_pos>
        <strand>+</strand>
        <context>TTGATGATGA[C/G]TTTTCTTGtt</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GATAAAAACTGAAGAAGGAACGAAAAGAGATCCATCTCCATTGATGATGA</left_flank>
        <right_flank>TTTTCTTGTTTTTTTTAATATAAAAATTTCCCTGTCAGTGAGCAAATTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAATTTTACACGGATATTAACTATATTTCTACATAGGATTCTCTAAATTTTAGTTATAAAGACATATTTCTTGGTTCCTGTGAGAGACATACAAAAGTTGTCAGCTGATAAATTCTTGGTCGTATAAAAATTAAAATTTCTAACGTTTTTTCAATTTTTGAATTTTTGAAGCAAAATAAAACATGAGCTCGAAAAACGCTAAGGCCTGAAAACCATTCTCAAACATTCTGACTGACAGTATACTGCTGAAGCCGTAAACTGGTATACCAGGATACCACCCAATACAGTATACATACATCATAAATGACAGGTCACTGTATACTGAGAGTATACCTTTAACCCTGTACTGGAAGGGAACCCACACTATGACCAGAAAACAAGACTATAACCGGATGTAACTGACAGCCGGATCTAACTAAATGTACCACGTTTTAATAGAAAAATAATGATAAAAACTGAAGAAGGAACGAAAAGAGATCCATCTCCATTGATGATGATTTTTCTTGTTTTTTTTAATATAAAAATTTCCCTGTCAGTGAGCAAATTTATTAACGGGTTCTCTACTTTTCTGGATTGAAAATTGATGTTTTTGTCATAGTCGCAAAAAGCCGGTAGACGAATATTCTTGGTCCGGCCCGCCTACCACTGTTGAAAAATTTCCAATGAAAAATTGGATAATTTTTTTGAATAAAAAAAGAAAAAAGGTTACATTTTTAAACAAAATTAACAAAATAGAAAGTAGTCAAAAATAGGTCGTTTTTGTAAATATTTTTGAAAAAATTTCAAAATTTTTGAAAAAAAAATCAAAAAAAATCAGCGTGTGTACAGACCCCGGCCCGGCCCGTCAAAATTCTCGACGGGCCGACCCAAGATTTTGCAACTATGGTTTTTGGAAAAACTTCCAATTTTGAAAAATCTGACAGTTTCAAAAACGCTAGAATATTTTATACAAGTTCATATGTTTTTACAACTTCATCCAATAAGACATAAGATCTACA</canonical>
            <polymorphic>AGAAATTTTACACGGATATTAACTATATTTCTACATAGGATTCTCTAAATTTTAGTTATAAAGACATATTTCTTGGTTCCTGTGAGAGACATACAAAAGTTGTCAGCTGATAAATTCTTGGTCGTATAAAAATTAAAATTTCTAACGTTTTTTCAATTTTTGAATTTTTGAAGCAAAATAAAACATGAGCTCGAAAAACGCTAAGGCCTGAAAACCATTCTCAAACATTCTGACTGACAGTATACTGCTGAAGCCGTAAACTGGTATACCAGGATACCACCCAATACAGTATACATACATCATAAATGACAGGTCACTGTATACTGAGAGTATACCTTTAACCCTGTACTGGAAGGGAACCCACACTATGACCAGAAAACAAGACTATAACCGGATGTAACTGACAGCCGGATCTAACTAAATGTACCACGTTTTAATAGAAAAATAATGATAAAAACTGAAGAAGGAACGAAAAGAGATCCATCTCCATTGATGATGASTTTTCTTGTTTTTTTTAATATAAAAATTTCCCTGTCAGTGAGCAAATTTATTAACGGGTTCTCTACTTTTCTGGATTGAAAATTGATGTTTTTGTCATAGTCGCAAAAAGCCGGTAGACGAATATTCTTGGTCCGGCCCGCCTACCACTGTTGAAAAATTTCCAATGAAAAATTGGATAATTTTTTTGAATAAAAAAAGAAAAAAGGTTACATTTTTAAACAAAATTAACAAAATAGAAAGTAGTCAAAAATAGGTCGTTTTTGTAAATATTTTTGAAAAAATTTCAAAATTTTTGAAAAAAAAATCAAAAAAAATCAGCGTGTGTACAGACCCCGGCCCGGCCCGTCAAAATTCTCGACGGGCCGACCCAAGATTTTGCAACTATGGTTTTTGGAAAAACTTCCAATTTTGAAAAATCTGACAGTTTCAAAAACGCTAGAATATTTTATACAAGTTCATATGTTTTTACAACTTCATCCAATAAGACATAAGATCTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACTATGACCAGAAAACAAGAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGCGACTATGACAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACACTATGACCAGAAAACAAGACTATAACCGGATGTAACTGACAGCCGGATCTAACTAAATGTACCACGTTTTAATAGAAAAATAATGATAAAAACTGAAGAAGGAACGAAAAGAGATCCATCTCCATTGATGATGATTTTTCTTGTTTTTTTTAATATAAAAATTTCCCTGTCAGTGAGCAAATTTATTAACGGGTTCTCTACTTTTCTGGATTGAAAATTGATGTTTTTGTCATAGTCGCAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACACTATGACCAGAAAACAAGACTATAACCGGATGTAACTGACAGCCGGATCTAACTAAATGTACCACGTTTTAATAGAAAAATAATGATAAAAACTGAAGAAGGAACGAAAAGAGATCCATCTCCATTGATGATGASTTTTCTTGTTTTTTTTAATATAAAAATTTCCCTGTCAGTGAGCAAATTTATTAACGGGTTCTCTACTTTTCTGGATTGAAAATTGATGTTTTTGTCATAGTCGCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32329</snp_id>
        <super_contig>c007401546.Contig1</super_contig>
        <contig_pos>4041</contig_pos>
        <strand>+</strand>
        <context>AAATTCAAAT[C/T]TACGTATTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTGTGGTTCATTGCTGTTACTACTTATCAGGTAGGCTTAAAATTCAAAT</left_flank>
        <right_flank>TACGTATTTAATTTTCTATAATTTCAGAATCCAGCAATCAAGTGTCTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATAATTTTCTGGAACGGGAAAACTATGATAACTCTAAACATAATTCGATAATTTGGAATTATCAGAATATTTGCACAAGTTTTTAGTTTTTATAGCTCTAGGTGTTGTAGTCTAATCAAATTCTTGGATTTGAAGAAATCAAACTTATAGCTTTCAACCTATTTCCAGATACCGTTACAGGAACAATGAATGGGAAAACTATGCGAGAGGAGACCCAATCACTCCAGTTCAAAAAATTAAACATCAAAGTGGAGCACAATCTGGAATGTTCTGGATGGACGGACCGATTTCATTTGAACACATTCGATTGACAACTAATTCGAAAGCAGAGAAAAAAGATCATATTTTTCTGCAAAGTTTGCACAAATGGCGTCCAGTTGTTACAGTTCGAAAATTGGAAAATGGAGATGAAAATCCGAATTTTGACGAGGAATTTAGAATTCAAAATGTGTGGTTCATTGCTGTTACTACTTATCAGGTAGGCTTAAAATTCAAATTTACGTATTTAATTTTCTATAATTTCAGAATCCAGCAATCAAGTGTCTGAAAGTGGAGAACAATAAGATGGCATCTGGTTTTCGTTCAACTGGAAATCATAAAAATAGTCTTCCGACACGTGGCACCAAACGGACTGCTTCTGAAACCTTTCCAACTCCTCCTTCAAGTACATCACCACCATCGAAAATGAATTCAAACGGACACTTTTCGAATGCTCACTATTCAAATCAAGAAAATTTTGATTTTTCAATGACGGGGAATTCCCATCAATATTGGATGAACCCAGATCAGAATACGTGGATTTACGGATACAATATGGAACAACAAATGGAACAACCAGTCATTAATCAATGGAATATGCAGAATTTCGGACATCCAACGAATTTGAATTATGAGCAATATGGAAATCCAAATAACACAATTGGTCCAGAATTTTACCACGGATTGAATAATTTTTAATTGCACATCTTTTCAATAAAATTGAATCAAATTCTAATAAG</canonical>
            <polymorphic>TAATAATTTTCTGGAACGGGAAAACTATGATAACTCTAAACATAATTCGATAATTTGGAATTATCAGAATATTTGCACAAGTTTTTAGTTTTTATAGCTCTAGGTGTTGTAGTCTAATCAAATTCTTGGATTTGAAGAAATCAAACTTATAGCTTTCAACCTATTTCCAGATACCGTTACAGGAACAATGAATGGGAAAACTATGCGAGAGGAGACCCAATCACTCCAGTTCAAAAAATTAAACATCAAAGTGGAGCACAATCTGGAATGTTCTGGATGGACGGACCGATTTCATTTGAACACATTCGATTGACAACTAATTCGAAAGCAGAGAAAAAAGATCATATTTTTCTGCAAAGTTTGCACAAATGGCGTCCAGTTGTTACAGTTCGAAAATTGGAAAATGGAGATGAAAATCCGAATTTTGACGAGGAATTTAGAATTCAAAATGTGTGGTTCATTGCTGTTACTACTTATCAGGTAGGCTTAAAATTCAAATYTACGTATTTAATTTTCTATAATTTCAGAATCCAGCAATCAAGTGTCTGAAAGTGGAGAACAATAAGATGGCATCTGGTTTTCGTTCAACTGGAAATCATAAAAATAGTCTTCCGACACGTGGCACCAAACGGACTGCTTCTGAAACCTTTCCAACTCCTCCTTCAAGTACATCACCACCATCGAAAATGAATTCAAACGGACACTTTTCGAATGCTCACTATTCAAATCAAGAAAATTTTGATTTTTCAATGACGGGGAATTCCCATCAATATTGGATGAACCCAGATCAGAATACGTGGATTTACGGATACAATATGGAACAACAAATGGAACAACCAGTCATTAATCAATGGAATATGCAGAATTTCGGACATCCAACGAATTTGAATTATGAGCAATATGGAAATCCAAATAACACAATTGGTCCAGAATTTTACCACGGATTGAATAATTTTTAATTGCACATCTTTTCAATAAAATTGAATCAAATTCTAATAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>300 193 120 105 58 50 49 45 24 18 13 12 7 6</canonical_bands>
                <polymorphic_bands>300 199 120 105 58 50 49 45 24 18 13 12 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>170 116 105 82 76 62 50 45 39 32 26 24 21 20 18 13 13 12 11 10 10 8 7 7 7 6 6 4</canonical_bands>
                <polymorphic_bands>170 116 105 82 76 62 50 45 39 32 26 24 21 20 19 18 13 12 11 10 10 8 7 7 7 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAGTTGTTACAGTTCGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>ACGTGTCGGAAGACTATTTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CCAGTTGTTACAGTTCGAAAATTGGAAAATGGAGATGAAAATCCGAATTTTGACGAGGAATTTAGAATTCAAAATGTGTGGTTCATTGCTGTTACTACTTATCAGGTAGGCTTAAAATTCAAATTTACGTATTTAATTTTCTATAATTTCAGAATCCAGCAATCAAGTGTCTGAAAGTGGAGAACAATAAGATGGCATCTGGTTTTCGTTCAACTGGAAATCATAAAAATAGTCTTCCGACACGT</canonical_amplicon>
		<polymorphic_amplicon>CCAGTTGTTACAGTTCGAAAATTGGAAAATGGAGATGAAAATCCGAATTTTGACGAGGAATTTAGAATTCAAAATGTGTGGTTCATTGCTGTTACTACTTATCAGGTAGGCTTAAAATTCAAATYTACGTATTTAATTTTCTATAATTTCAGAATCCAGCAATCAAGTGTCTGAAAGTGGAGAACAATAAGATGGCATCTGGTTTTCGTTCAACTGGAAATCATAAAAATAGTCTTCCGACACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32330</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>99573</contig_pos>
        <strand>+</strand>
        <context>GMCTGATGAA[A/G]AAATCTTGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATGCGGACGAGGGCCTGAAATTTTAATTTTGTTGCAACAGCCTGATGAA</left_flank>
        <right_flank>AAATCTTGTCGATTCACTGACCTCAAAGCTAGCTCCGGTTCTCTTTTCTT</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTGACCTCCTCAACGTCGAATTTGAATCCTTTCGGGAACTTGTCGGCTGGCAGAATGAAATCACAGAATCCGAGGACACGTTCTCCCATTCCTCCCAACTCGAGGTAAGCAGTGTTGAAGTCGTCACGAAGTTTGTCGGTAAGCTCAACTTCCTTTCCGTTCAAGAAGATAGTGGAGCAAACGTCCAAGATTCTTTCTGGGGCTCCCTTCATCACAAGCAAGTAGTGATCTCCATTGTCATGGACAGAAACTTGGTATTTATTGGTGGAGTTGAATGGAATCTCAGCAATCTTTGGATTCTTCTCACGAACAGCAATAACATTTCCTTGAGTGAGCTCGGTGAACTTGAGAAGAGCGATCTCAGAAGCATCTCCAGTGCAATCACGACGAAGGACTGGGGTGTCTTGTTGTCCTGCCTTGAACTCAGCACGGTTACAGAGGGAAGCGATGCGGACGAGGGCCTGAAATTTTAATTTTGTTGCAACAGCCTGATGAAAAAATCTTGTCGATTCACTGACCTCAAAGCTAGCTCCGGTTCTCTTTTCTTGGCTGGTCTGGGTCTCGGTGGTATCGCACTCATGAATAGTCTGATCGTACCACATATGGGCAACGGTCATTCTGTTTTGAGTGAGAGTTCCGGTTTTATCGGAACAGATGGTGGAAGTGGATCCAAGAGTTTCGACGGCTTCGAGGTTCTTAACAAGACAGTTCTTGCTGGCCATTCTCTTGGCGGTAAGAGTGAGGCACACGGTGACGGTAGCGATCAATCCTTCTGGAACATTGGCGACAATGATACCGATAAGGAAAACGACAGCAGTGAGCCAATGGTATCCAAGGATGAAGGCAATGATGAAGAAAGAAATTCCAAGGAAAACGGCGACACCAGTGATAAGATGGATGAAATGCTCGATTTCGCGAGCAATTGGGGTCATTCCGGTGTCGAGTCCAGAAGCCAAATGGGCAATTCTTCCCATGACGGTGTTGTCTCCGGTGTAGA</canonical>
            <polymorphic>AAGTTGACCTCCTCAACGTCGAATTTGAATCCTTTCGGGAACTTGTCGGCTGGCAGAATGAAATCACAGAATCCGAGGACACGTTCTCCCATTCCTCCCAACTCGAGGTAAGCAGTGTTGAAGTCGTCACGAAGTTTGTCGGTAAGCTCAACTTCCTTTCCGTTCAAGAAGATAGTGGAGCAAACGTCCAAGATTCTTTCTGGGGCTCCCTTCATCACAAGCAAGTAGTGATCTCCATTGTCATGGACAGAAACTTGGTATTTATTGGTGGAGTTGAATGGAATCTCAGCAATCTTTGGATTCTTCTCACGAACAGCAATAACATTTCCTTGAGTGAGCTCGGTGAACTTGAGAAGAGCGATCTCAGAAGCATCTCCAGTGCAATCACGACGAAGGACTGGGGTGTCTTGTTGTCCTGCCTTGAACTCAGCACGGTTACAGAGGGAAGCGATGCGGACGAGGGCCTGAAATTTTAATTTTGTTGCAACAGCCTGATGAARAAATCTTGTCGATTCACTGACCTCAAAGCTAGCTCCGGTTCTCTTTTCTTGGCTGGTCTGGGTCTCGGTGGTATCGCACTCATGAATAGTCTGATCGTACCACATATGGGCAACGGTCATTCTGTTTTGAGTGAGAGTTCCGGTTTTATCGGAACAGATGGTGGAAGTGGATCCAAGAGTTTCGACGGCTTCGAGGTTCTTAACAAGACAGTTCTTGCTGGCCATTCTCTTGGCGGTAAGAGTGAGGCACACGGTGACGGTAGCGATCAATCCTTCTGGAACATTGGCGACAATGATACCGATAAGGAAAACGACAGCAGTGAGCCAATGGTATCCAAGGATGAAGGCAATGATGAAGAAAGAAATTCCAAGGAAAACGGCGACACCAGTGATAAGATGGATGAAATGCTCGATTTCGCGAGCAATTGGGGTCATTCCGGTGTCGAGTCCAGAAGCCAAATGGGCAATTCTTCCCATGACGGTGTTGTCTCCGGTGTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCTCAGAAGCATCTCCAGT</pcr_primer_p1>
		<pcr_primer_p2>CATATGTGGTACGATCAGACTATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATCTCAGAAGCATCTCCAGTGCAATCACGACGAAGGACTGGGGTGTCTTGTTGTCCTGCCTTGAACTCAGCACGGTTACAGAGGGAAGCGATGCGGACGAGGGCCTGAAATTTTAATTTTGTTGCAACAGCCTGATGAAAAAATCTTGTCGATTCACTGACCTCAAAGCTAGCTCCGGTTCTCTTTTCTTGGCTGGTCTGGGTCTCGGTGGTATCGCACTCATGAATAGTCTGATCGTACCACATATG</canonical_amplicon>
		<polymorphic_amplicon>GATCTCAGAAGCATCTCCAGTGCAATCACGACGAAGGACTGGGGTGTCTTGTTGTCCTGCCTTGAACTCAGCACGGTTACAGAGGGAAGCGATGCGGACGAGGGCCTGAAATTTTAATTTTGTTGCAACAGCCTGATGAARAAATCTTGTCGATTCACTGACCTCAAAGCTAGCTCCGGTTCTCTTTTCTTGGCTGGTCTGGGTCTCGGTGGTATCGCACTCATGAATAGTCTGATCGTACCACATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32331</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>117968</contig_pos>
        <strand>+</strand>
        <context>TTTGAAATTT[A/G]AMAAAAAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGGAAGTTGCCAATTGATCAGAGAGAAGTGATTTCCTGATTTGAAATTT</left_flank>
        <right_flank>ACAAAAAATTGTCTAATTATTCCAGAAAGAGCTTCGAAAGACCATGAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACAGTGTTCATTAGCAGCCGAGGGTCTGTGCAGATGGGTTCTGGCAATTGATATGTATAATCAAATCAGTAAGATCGTAGAGCCAAAACGGGAGAGATTGAGAAAAGCGGAAGTTTTGGTGAAGCAGCATTTAAAACAATTAGAAGTGAAGAGAAAAGCTTTGCTGGTAAGTTAGATTGTGAACTGACAAAAAATGTTCGGACCTTTTCAGAAAGTAACAGAAAAATTGCAAGGATTATCAGATCAATTCAGTCAGATGTGTCAAAAGAAACAGGAACTGGAATCCCAAATTTCCAGTTGTGAGGTTCGAATGGAAAGAGCCGAAAGACTTGTTCAAGCGTTGAGTGGAGAGAAAGACAAATGGAAAAGTAAAATAACGGATGTCACTCACGAAGATTCATTGAGTGTACCGTATTCTGTTGGATCTGCTCTAGCGTTGCATATTTTTGGGAAGTTGCCAATTGATCAGAGAGAAGTGATTTCCTGATTTGAAATTTGACAAAAAATTGTCTAATTATTCCAGAAAGAGCTTCGAAAGACCATGAGAAGCTTGTTCCCAAAATTGGAAATAACAATCGCTTGTGACTTGAAAACCTTGGTTATGCTGGTTGATGATCCAATCTGTTTCATTAACGATGATAGCCGAGCTTTGGAATTCTTAGAATCAAAATTCGAAAAAGTAGTTGTCTCGAATCAATGGTCAGAAGCTGAACGCCAGCAGTGTCTAGCTTCGAATTCAGTTTTGCTTTTTGAAATTAATCAAGAAAATTTGAAAGCGGCGGAAGAAATCGATAATGCAGAATATTACAGTCAGATGGAGGAAGAAATCGTGGGTTGATTAGCAATGATTTCAATAGATTCTTTGTTTCAGGTTATCAAAATTGGAAACCATCAGCATGAAGTTAACAAAAACTTCAGAGTGTTCTTTAGAACAAGAGGAGCCAATAATCTCAATTTGAAAAAGTCTGTCATAATTGACAATCAGTTTAGTGACGGAG</canonical>
            <polymorphic>AAACAGTGTTCATTAGCAGCCGAGGGTCTGTGCAGATGGGTTCTGGCAATTGATATGTATAATCAAATCAGTAAGATCGTAGAGCCAAAACGGGAGAGATTGAGAAAAGCGGAAGTTTTGGTGAAGCAGCATTTAAAACAATTAGAAGTGAAGAGAAAAGCTTTGCTGGTAAGTTAGATTGTGAACTGACAAAAAATGTTCGGACCTTTTCAGAAAGTAACAGAAAAATTGCAAGGATTATCAGATCAATTCAGTCAGATGTGTCAAAAGAAACAGGAACTGGAATCCCAAATTTCCAGTTGTGAGGTTCGAATGGAAAGAGCCGAAAGACTTGTTCAAGCGTTGAGTGGAGAGAAAGACAAATGGAAAAGTAAAATAACGGATGTCACTCACGAAGATTCATTGAGTGTACCGTATTCTGTTGGATCTGCTCTAGCGTTGCATATTTTTGGGAAGTTGCCAATTGATCAGAGAGAAGTGATTTCCTGATTTGAAATTTRACAAAAAATTGTCTAATTATTCCAGAAAGAGCTTCGAAAGACCATGAGAAGCTTGTTCCCAAAATTGGAAATAACAATCGCTTGTGACTTGAAAACCTTGGTTATGCTGGTTGATGATCCAATCTGTTTCATTAACGATGATAGCCGAGCTTTGGAATTCTTAGAATCAAAATTCGAAAAAGTAGTTGTCTCGAATCAATGGTCAGAAGCTGAACGCCAGCAGTGTCTAGCTTCGAATTCAGTTTTGCTTTTTGAAATTAATCAAGAAAATTTGAAAGCGGCGGAAGAAATCGATAATGCAGAATATTACAGTCAGATGGAGGAAGAAATCGTGGGTTGATTAGCAATGATTTCAATAGATTCTTTGTTTCAGGTTATCAAAATTGGAAACCATCAGCATGAAGTTAACAAAAACTTCAGAGTGTTCTTTAGAACAAGAGGAGCCAATAATCTCAATTTGAAAAAGTCTGTCATAATTGACAATCAGTTTAGTGACGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTCATTGAGTGTACCGTATTC</pcr_primer_p1>
		<pcr_primer_p2>GCTATCATCGTTAATGAAACAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATTCATTGAGTGTACCGTATTCTGTTGGATCTGCTCTAGCGTTGCATATTTTTGGGAAGTTGCCAATTGATCAGAGAGAAGTGATTTCCTGATTTGAAATTTGACAAAAAATTGTCTAATTATTCCAGAAAGAGCTTCGAAAGACCATGAGAAGCTTGTTCCCAAAATTGGAAATAACAATCGCTTGTGACTTGAAAACCTTGGTTATGCTGGTTGATGATCCAATCTGTTTCATTAACGATGATAGC</canonical_amplicon>
		<polymorphic_amplicon>GATTCATTGAGTGTACCGTATTCTGTTGGATCTGCTCTAGCGTTGCATATTTTTGGGAAGTTGCCAATTGATCAGAGAGAAGTGATTTCCTGATTTGAAATTTRACAAAAAATTGTCTAATTATTCCAGAAAGAGCTTCGAAAGACCATGAGAAGCTTGTTCCCAAAATTGGAAATAACAATCGCTTGTGACTTGAAAACCTTGGTTATGCTGGTTGATGATCCAATCTGTTTCATTAACGATGATAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32332</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>135550</contig_pos>
        <strand>+</strand>
        <context>ATACCAACGR[A/G]CGATTCTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTTTCCTTGAGAAAACCGTAAAAGCTGAACTTCAAAATACCAACGG</left_flank>
        <right_flank>CGATTCTTTTTAAAAACGTTTTAAAAAGTTGATCTGGATGAATAATCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGATTCTCCATCCTCTTTCTCTCTTGATTCAACTTTTATCCAACTACTATTTCACACTTTTCATCGATTCGTTTTTCTTCTATCATTATCGTGTCACAGATTGTAGAGCTCCGATGATACTATGTCATTAGTGTCAGGAAAAACAGAGAATTCGGCGAGATGGTCAATACGACCATCGTGTTCTTGTAATGACTCCCTGTTTACGATATCAGATACGGAGTGCTCCGAAATAGAAGCAGATATGCGGAACAAAGACCGACATAGCTGGAAAAGAAGGTTTACAAATAGATAAAAATCAGAACTGATGAAAGATCGTCTGGAATATTCGATCAATTAATTTTTTCTTGATTTCAGCCAACGCCGCAGTGTTCACAACATCGGAAACCCAGTAAGGAATTCATTTGTCGATGGAATAAAAAACACATCAACACCTAAAAATCAGGTTAGTTTTTTTTTCCTTGAGAAAACCGTAAAAGCTGAACTTCAAAATACCAACGGTCGATTCTTTTTAAAAACGTTTTAAAAAGTTGATCTGGATGAATAATCAATCAAAAGTCGTTTTTTGAAAAAGTTTATTTTTAAATTCACACCCTATTTTCACACTTTCTCGTTTTTTTTTTGGCTATATCGTCTGAACGCCTCATTTGTCCTCTACTGTTCACATTCCCTCATGCAAAAACCCAGTTTCCGACGGTCGGGCGATTGCAGATGCAATCTCACAAATTGGTGATTTTGACGGTGGCCACTTTTTATGTTCTTATTGGTGTTAATCTGGGGTTGGCTAGACGCTCCTTGTCTCTCAAGGAGTGTCAAAATGTCCTTGGCTTCGGAGTCAGCTAATTTTGTTTTCGGCTTCACATTCTCTATAAGTTGTATCTATTCCAAAGAGTCAGTAGAGAAGAAGATCCTTTCGGAAAGTTTACAAACATTTTCTACAAAACGCGGCAAACATTCAATCCATTGTGTTTATACGAATGAGTGTTTACCTGAATCCGAACC</canonical>
            <polymorphic>CCGATTCTCCATCCTCTTTCTCTCTTGATTCAACTTTTATCCAACTACTATTTCACACTTTTCATCGATTCGTTTTTCTTCTATCATTATCGTGTCACAGATTGTAGAGCTCCGATGATACTATGTCATTAGTGTCAGGAAAAACAGAGAATTCGGCGAGATGGTCAATACGACCATCGTGTTCTTGTAATGACTCCCTGTTTACGATATCAGATACGGAGTGCTCCGAAATAGAAGCAGATATGCGGAACAAAGACCGACATAGCTGGAAAAGAAGGTTTACAAATAGATAAAAATCAGAACTGATGAAAGATCGTCTGGAATATTCGATCAATTAATTTTTTCTTGATTTCAGCCAACGCCGCAGTGTTCACAACATCGGAAACCCAGTAAGGAATTCATTTGTCGATGGAATAAAAAACACATCAACACCTAAAAATCAGGTTAGTTTTTTTTTCCTTGAGAAAACCGTAAAAGCTGAACTTCAAAATACCAACGGRCGATTCTTTTTAAAAACGTTTTAAAAAGTTGATCTGGATGAATAATCAATCAAAAGTCGTTTTTTGAAAAAGTTTATTTTTAAATTCACACCCTATTTTCACACTTTCTCGTTTTTTTTTTGGCTATATCGTCTGAACGCCTCATTTGTCCTCTACTGTTCACATTCCCTCATGCAAAAACCCAGTTTCCGACGGTCGGGCGATTGCAGATGCAATCTCACAAATTGGTGATTTTGACGGTGGCCACTTTTTATGTTCTTATTGGTGTTAATCTGGGGTTGGCTAGACGCTCCTTGTCTCTCAAGGAGTGTCAAAATGTCCTTGGCTTCGGAGTCAGCTAATTTTGTTTTCGGCTTCACATTCTCTATAAGTTGTATCTATTCCAAAGAGTCAGTAGAGAAGAAGATCCTTTCGGAAAGTTTACAAACATTTTCTACAAAACGCGGCAAACATTCAATCCATTGTGTTTATACGAATGAGTGTTTACCTGAATCCGAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>500 304 196</canonical_bands>
                <polymorphic_bands>696 304</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>470 261 159 45 37 28</canonical_bands>
                <polymorphic_bands>470 261 187 45 37</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 262 94 79 66</canonical_bands>
                <polymorphic_bands>593 262 79 66</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACACATCAACACCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATGTGAACAGTAGAGGACAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAACACATCAACACCTAAAAATCAGGTTAGTTTTTTTTTCCTTGAGAAAACCGTAAAAGCTGAACTTCAAAATACCAACGGTCGATTCTTTTTAAAAACGTTTTAAAAAGTTGATCTGGATGAATAATCAATCAAAAGTCGTTTTTTGAAAAAGTTTATTTTTAAATTCACACCCTATTTTCACACTTTCTCGTTTTTTTTTTGGCTATATCGTCTGAACGCCTCATTTGTCCTCTACTGTTCACATT</canonical_amplicon>
		<polymorphic_amplicon>AAAAACACATCAACACCTAAAAATCAGGTTAGTTTTTTTTTCCTTGAGAAAACCGTAAAAGCTGAACTTCAAAATACCAACGGRCGATTCTTTTTAAAAACGTTTTAAAAAGTTGATCTGGATGAATAATCAATCAAAAGTCGTTTTTTGAAAAAGTTTATTTTTAAATTCACACCCTATTTTCACACTTTCTCGTTTTTTTTTTGGCTATATCGTCTGAACGCCTCATTTGTCCTCTACTGTTCACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32333</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>135662</contig_pos>
        <strand>+</strand>
        <context>CACTTTCTCG[A/G]TTTTTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGAAAAAGTTTATTTTTAAATTCACACCCTATTTTCACACTTTCTCG</left_flank>
        <right_flank>TTTTTTTTTGGCTATATCGTCTGAACGCCTCATTTGTCCTCTACTGTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATGATACTATGTCATTAGTGTCAGGAAAAACAGAGAATTCGGCGAGATGGTCAATACGACCATCGTGTTCTTGTAATGACTCCCTGTTTACGATATCAGATACGGAGTGCTCCGAAATAGAAGCAGATATGCGGAACAAAGACCGACATAGCTGGAAAAGAAGGTTTACAAATAGATAAAAATCAGAACTGATGAAAGATCGTCTGGAATATTCGATCAATTAATTTTTTCTTGATTTCAGCCAACGCCGCAGTGTTCACAACATCGGAAACCCAGTAAGGAATTCATTTGTCGATGGAATAAAAAACACATCAACACCTAAAAATCAGGTTAGTTTTTTTTTCCTTGAGAAAACCGTAAAAGCTGAACTTCAAAATACCAACGGTCGATTCTTTTTAAAAACGTTTTAAAAAGTTGATCTGGATGAATAATCAATCAAAAGTCGTTTTTTGAAAAAGTTTATTTTTAAATTCACACCCTATTTTCACACTTTCTCGTTTTTTTTTTGGCTATATCGTCTGAACGCCTCATTTGTCCTCTACTGTTCACATTCCCTCATGCAAAAACCCAGTTTCCGACGGTCGGGCGATTGCAGATGCAATCTCACAAATTGGTGATTTTGACGGTGGCCACTTTTTATGTTCTTATTGGTGTTAATCTGGGGTTGGCTAGACGCTCCTTGTCTCTCAAGGAGTGTCAAAATGTCCTTGGCTTCGGAGTCAGCTAATTTTGTTTTCGGCTTCACATTCTCTATAAGTTGTATCTATTCCAAAGAGTCAGTAGAGAAGAAGATCCTTTCGGAAAGTTTACAAACATTTTCTACAAAACGCGGCAAACATTCAATCCATTGTGTTTATACGAATGAGTGTTTACCTGAATCCGAACCTTTTTATTATTGTACTTCTTCTCACTCTTCCACACCCTCTTCTATTCACACCAATTACTGTTCGGAAATATATGGTATTCGTTGAGGAACGAATGCATTCAATTTTCTGTCC</canonical>
            <polymorphic>CGATGATACTATGTCATTAGTGTCAGGAAAAACAGAGAATTCGGCGAGATGGTCAATACGACCATCGTGTTCTTGTAATGACTCCCTGTTTACGATATCAGATACGGAGTGCTCCGAAATAGAAGCAGATATGCGGAACAAAGACCGACATAGCTGGAAAAGAAGGTTTACAAATAGATAAAAATCAGAACTGATGAAAGATCGTCTGGAATATTCGATCAATTAATTTTTTCTTGATTTCAGCCAACGCCGCAGTGTTCACAACATCGGAAACCCAGTAAGGAATTCATTTGTCGATGGAATAAAAAACACATCAACACCTAAAAATCAGGTTAGTTTTTTTTTCCTTGAGAAAACCGTAAAAGCTGAACTTCAAAATACCAACGGTCGATTCTTTTTAAAAACGTTTTAAAAAGTTGATCTGGATGAATAATCAATCAAAAGTCGTTTTTTGAAAAAGTTTATTTTTAAATTCACACCCTATTTTCACACTTTCTCGRTTTTTTTTTGGCTATATCGTCTGAACGCCTCATTTGTCCTCTACTGTTCACATTCCCTCATGCAAAAACCCAGTTTCCGACGGTCGGGCGATTGCAGATGCAATCTCACAAATTGGTGATTTTGACGGTGGCCACTTTTTATGTTCTTATTGGTGTTAATCTGGGGTTGGCTAGACGCTCCTTGTCTCTCAAGGAGTGTCAAAATGTCCTTGGCTTCGGAGTCAGCTAATTTTGTTTTCGGCTTCACATTCTCTATAAGTTGTATCTATTCCAAAGAGTCAGTAGAGAAGAAGATCCTTTCGGAAAGTTTACAAACATTTTCTACAAAACGCGGCAAACATTCAATCCATTGTGTTTATACGAATGAGTGTTTACCTGAATCCGAACCTTTTTATTATTGTACTTCTTCTCACTCTTCCACACCCTCTTCTATTCACACCAATTACTGTTCGGAAATATATGGTATTCGTTGAGGAACGAATGCATTCAATTTTCTGTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACACATCAACACCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATGTGAACAGTAGAGGACAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAACACATCAACACCTAAAAATCAGGTTAGTTTTTTTTTCCTTGAGAAAACCGTAAAAGCTGAACTTCAAAATACCAACGGTCGATTCTTTTTAAAAACGTTTTAAAAAGTTGATCTGGATGAATAATCAATCAAAAGTCGTTTTTTGAAAAAGTTTATTTTTAAATTCACACCCTATTTTCACACTTTCTCGTTTTTTTTTTGGCTATATCGTCTGAACGCCTCATTTGTCCTCTACTGTTCACATT</canonical_amplicon>
		<polymorphic_amplicon>AAAAACACATCAACACCTAAAAATCAGGTTAGTTTTTTTTTCCTTGAGAAAACCGTAAAAGCTGAACTTCAAAATACCAACGGTCGATTCTTTTTAAAAACGTTTTAAAAAGTTGATCTGGATGAATAATCAATCAAAAGTCGTTTTTTGAAAAAGTTTATTTTTAAATTCACACCCTATTTTCACACTTTCTCGRTTTTTTTTTGGCTATATCGTCTGAACGCCTCATTTGTCCTCTACTGTTCACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32334</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>135954</contig_pos>
        <strand>+</strand>
        <context>GTAGAGAAGA[A/G]GATCCTTTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTCACATTCTCTATAAGTTGTATCTATTCCAAAGAGTCAGTAGAGAAGA</left_flank>
        <right_flank>GATCCTTTCGGAAAGTTTACAAACATTTTCTACAAAACGCGGCAAACATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCGATGGAATAAAAAACACATCAACACCTAAAAATCAGGTTAGTTTTTTTTTCCTTGAGAAAACCGTAAAAGCTGAACTTCAAAATACCAACGGTCGATTCTTTTTAAAAACGTTTTAAAAAGTTGATCTGGATGAATAATCAATCAAAAGTCGTTTTTTGAAAAAGTTTATTTTTAAATTCACACCCTATTTTCACACTTTCTCGTTTTTTTTTTGGCTATATCGTCTGAACGCCTCATTTGTCCTCTACTGTTCACATTCCCTCATGCAAAAACCCAGTTTCCGACGGTCGGGCGATTGCAGATGCAATCTCACAAATTGGTGATTTTGACGGTGGCCACTTTTTATGTTCTTATTGGTGTTAATCTGGGGTTGGCTAGACGCTCCTTGTCTCTCAAGGAGTGTCAAAATGTCCTTGGCTTCGGAGTCAGCTAATTTTGTTTTCGGCTTCACATTCTCTATAAGTTGTATCTATTCCAAAGAGTCAGTAGAGAAGAAGATCCTTTCGGAAAGTTTACAAACATTTTCTACAAAACGCGGCAAACATTCAATCCATTGTGTTTATACGAATGAGTGTTTACCTGAATCCGAACCTTTTTATTATTGTACTTCTTCTCACTCTTCCACACCCTCTTCTATTCACACCAATTACTGTTCGGAAATATATGGTATTCGTTGAGGAACGAATGCATTCAATTTTCTGTCCTTCCTCTTTTTTGTTCATGTATTCTGAATAGTTTTTTTCTGTCCCTCACTCTGCAGTTCTCTTCTCTTCTTCTTCATCTCGTCTCAGTTAGTTTTGCATCACTGCCTACGTTTCATCACTTTCAATAGTCTTTCTCAGCAATCGAGATACTTTTCTTTGTCGCCTCTTGTTTTTGTTTGATTCATGCTGTTATCTGTCCGATTTCAGATTTATTTTAATATATTTTTACTGTTCCTAAAATATTCATCAAATATTTTCGTTTGATTTGAATATAATCATTTTATTCAAAGTA</canonical>
            <polymorphic>GTCGATGGAATAAAAAACACATCAACACCTAAAAATCAGGTTAGTTTTTTTTTCCTTGAGAAAACCGTAAAAGCTGAACTTCAAAATACCAACGGTCGATTCTTTTTAAAAACGTTTTAAAAAGTTGATCTGGATGAATAATCAATCAAAAGTCGTTTTTTGAAAAAGTTTATTTTTAAATTCACACCCTATTTTCACACTTTCTCGTTTTTTTTTTGGCTATATCGTCTGAACGCCTCATTTGTCCTCTACTGTTCACATTCCCTCATGCAAAAACCCAGTTTCCGACGGTCGGGCGATTGCAGATGCAATCTCACAAATTGGTGATTTTGACGGTGGCCACTTTTTATGTTCTTATTGGTGTTAATCTGGGGTTGGCTAGACGCTCCTTGTCTCTCAAGGAGTGTCAAAATGTCCTTGGCTTCGGAGTCAGCTAATTTTGTTTTCGGCTTCACATTCTCTATAAGTTGTATCTATTCCAAAGAGTCAGTAGAGAAGARGATCCTTTCGGAAAGTTTACAAACATTTTCTACAAAACGCGGCAAACATTCAATCCATTGTGTTTATACGAATGAGTGTTTACCTGAATCCGAACCTTTTTATTATTGTACTTCTTCTCACTCTTCCACACCCTCTTCTATTCACACCAATTACTGTTCGGAAATATATGGTATTCGTTGAGGAACGAATGCATTCAATTTTCTGTCCTTCCTCTTTTTTGTTCATGTATTCTGAATAGTTTTTTTCTGTCCCTCACTCTGCAGTTCTCTTCTCTTCTTCTTCATCTCGTCTCAGTTAGTTTTGCATCACTGCCTACGTTTCATCACTTTCAATAGTCTTTCTCAGCAATCGAGATACTTTTCTTTGTCGCCTCTTGTTTTTGTTTGATTCATGCTGTTATCTGTCCGATTTCAGATTTATTTTAATATATTTTTACTGTTCCTAAAATATTCATCAAATATTTTCGTTTGATTTGAATATAATCATTTTATTCAAAGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACTTTTTATGTTCTTATTGGTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTCAGGTAAACACTCATTCGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CACTTTTTATGTTCTTATTGGTGTTAATCTGGGGTTGGCTAGACGCTCCTTGTCTCTCAAGGAGTGTCAAAATGTCCTTGGCTTCGGAGTCAGCTAATTTTGTTTTCGGCTTCACATTCTCTATAAGTTGTATCTATTCCAAAGAGTCAGTAGAGAAGAAGATCCTTTCGGAAAGTTTACAAACATTTTCTACAAAACGCGGCAAACATTCAATCCATTGTGTTTATACGAATGAGTGTTTACCTGAAT</canonical_amplicon>
		<polymorphic_amplicon>CACTTTTTATGTTCTTATTGGTGTTAATCTGGGGTTGGCTAGACGCTCCTTGTCTCTCAAGGAGTGTCAAAATGTCCTTGGCTTCGGAGTCAGCTAATTTTGTTTTCGGCTTCACATTCTCTATAAGTTGTATCTATTCCAAAGAGTCAGTAGAGAAGARGATCCTTTCGGAAAGTTTACAAACATTTTCTACAAAACGCGGCAAACATTCAATCCATTGTGTTTATACGAATGAGTGTTTACCTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32335</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>136072</contig_pos>
        <strand>+</strand>
        <context>GTACTTCTTC[C/T]CACTCTTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGAATGAGTGTTTACCTGAATCCGAACCTTTTTATTATTGTACTTCTTC</left_flank>
        <right_flank>CACTCTTCCACACCCTCTTCTATTCACACCAATTACTGTTCGGAAATATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAGTTGATCTGGATGAATAATCAATCAAAAGTCGTTTTTTGAAAAAGTTTATTTTTAAATTCACACCCTATTTTCACACTTTCTCGTTTTTTTTTTGGCTATATCGTCTGAACGCCTCATTTGTCCTCTACTGTTCACATTCCCTCATGCAAAAACCCAGTTTCCGACGGTCGGGCGATTGCAGATGCAATCTCACAAATTGGTGATTTTGACGGTGGCCACTTTTTATGTTCTTATTGGTGTTAATCTGGGGTTGGCTAGACGCTCCTTGTCTCTCAAGGAGTGTCAAAATGTCCTTGGCTTCGGAGTCAGCTAATTTTGTTTTCGGCTTCACATTCTCTATAAGTTGTATCTATTCCAAAGAGTCAGTAGAGAAGAAGATCCTTTCGGAAAGTTTACAAACATTTTCTACAAAACGCGGCAAACATTCAATCCATTGTGTTTATACGAATGAGTGTTTACCTGAATCCGAACCTTTTTATTATTGTACTTCTTCTCACTCTTCCACACCCTCTTCTATTCACACCAATTACTGTTCGGAAATATATGGTATTCGTTGAGGAACGAATGCATTCAATTTTCTGTCCTTCCTCTTTTTTGTTCATGTATTCTGAATAGTTTTTTTCTGTCCCTCACTCTGCAGTTCTCTTCTCTTCTTCTTCATCTCGTCTCAGTTAGTTTTGCATCACTGCCTACGTTTCATCACTTTCAATAGTCTTTCTCAGCAATCGAGATACTTTTCTTTGTCGCCTCTTGTTTTTGTTTGATTCATGCTGTTATCTGTCCGATTTCAGATTTATTTTAATATATTTTTACTGTTCCTAAAATATTCATCAAATATTTTCGTTTGATTTGAATATAATCATTTTATTCAAAGTAATTAGAGATCTGAACTTGAAGGTTATCCAACATAGAATTTTTCCAAATCCCTTATTTCGTTTATTCTAGCGATTCTAAAATAAATGTAGCACTTTGTCTCTCTGTTGATTCCTTTGTA</canonical>
            <polymorphic>AAAAAGTTGATCTGGATGAATAATCAATCAAAAGTCGTTTTTTGAAAAAGTTTATTTTTAAATTCACACCCTATTTTCACACTTTCTCGTTTTTTTTTTGGCTATATCGTCTGAACGCCTCATTTGTCCTCTACTGTTCACATTCCCTCATGCAAAAACCCAGTTTCCGACGGTCGGGCGATTGCAGATGCAATCTCACAAATTGGTGATTTTGACGGTGGCCACTTTTTATGTTCTTATTGGTGTTAATCTGGGGTTGGCTAGACGCTCCTTGTCTCTCAAGGAGTGTCAAAATGTCCTTGGCTTCGGAGTCAGCTAATTTTGTTTTCGGCTTCACATTCTCTATAAGTTGTATCTATTCCAAAGAGTCAGTAGAGAAGAAGATCCTTTCGGAAAGTTTACAAACATTTTCTACAAAACGCGGCAAACATTCAATCCATTGTGTTTATACGAATGAGTGTTTACCTGAATCCGAACCTTTTTATTATTGTACTTCTTCYCACTCTTCCACACCCTCTTCTATTCACACCAATTACTGTTCGGAAATATATGGTATTCGTTGAGGAACGAATGCATTCAATTTTCTGTCCTTCCTCTTTTTTGTTCATGTATTCTGAATAGTTTTTTTCTGTCCCTCACTCTGCAGTTCTCTTCTCTTCTTCTTCATCTCGTCTCAGTTAGTTTTGCATCACTGCCTACGTTTCATCACTTTCAATAGTCTTTCTCAGCAATCGAGATACTTTTCTTTGTCGCCTCTTGTTTTTGTTTGATTCATGCTGTTATCTGTCCGATTTCAGATTTATTTTAATATATTTTTACTGTTCCTAAAATATTCATCAAATATTTTCGTTTGATTTGAATATAATCATTTTATTCAAAGTAATTAGAGATCTGAACTTGAAGGTTATCCAACATAGAATTTTTCCAAATCCCTTATTTCGTTTATTCTAGCGATTCTAAAATAAATGTAGCACTTTGTCTCTCTGTTGATTCCTTTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATTGTGTTTATACGAATGAGT</pcr_primer_p1>
		<pcr_primer_p2>AAAACTAACTGAGACGAGATGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCATTGTGTTTATACGAATGAGTGTTTACCTGAATCCGAACCTTTTTATTATTGTACTTCTTCTCACTCTTCCACACCCTCTTCTATTCACACCAATTACTGTTCGGAAATATATGGTATTCGTTGAGGAACGAATGCATTCAATTTTCTGTCCTTCCTCTTTTTTGTTCATGTATTCTGAATAGTTTTTTTCTGTCCCTCACTCTGCAGTTCTCTTCTCTTCTTCTTCATCTCGTCTCAGTTAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>CCATTGTGTTTATACGAATGAGTGTTTACCTGAATCCGAACCTTTTTATTATTGTACTTCTTCYCACTCTTCCACACCCTCTTCTATTCACACCAATTACTGTTCGGAAATATATGGTATTCGTTGAGGAACGAATGCATTCAATTTTCTGTCCTTCCTCTTTTTTGTTCATGTATTCTGAATAGTTTTTTTCTGTCCCTCACTCTGCAGTTCTCTTCTCTTCTTCTTCATCTCGTCTCAGTTAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32336</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>137842</contig_pos>
        <strand>+</strand>
        <context>TCCTGTTGTC[C/G]TTTACCACAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCCGGTTCGAATAATTCGATTTCCTCTCCTCCTCCACCTCTCCTGTTGTC</left_flank>
        <right_flank>TTTACCACACCCTTCCTCTCACTCTCTCTATATCCTCTACACTATTATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCGTTAAATGTGTCACCTCTTCGATCGAAGTGGGTCGAAAGTGTCGAGTTACACTCAGCGAGCCGTGCGCATTGGTTTCAAAAAGTAGGGATCTCAAAAATCACGGGTTCCATTCAAATCTGAAGTTCAAACTTCCATTTTTGACCCAAAGTCTTCAGGATTTTATCCTTCATTATGTTTCCATGCTTGTCTTGATTCTTATCGTGATGATGTCTTGTCCGTATGACTGACATATCCGTTCCCGGTCTTCAATTCCCCTATACCGTCAAACGGTTTTATGTCATTTTCTGCTTTCCTTCCTTTCTTCTTTAGATTTTTCACCGCGAATAATTACCTGCTTTCCTCAAACTTTATAATTATCTTCTCATCGAAGCTTCTTCCAAAATACATTCCATCTCCTCTTTTTTAGCTGAATATGGAGAGAAAAAATGCATGGAATTGTGGAGACCCGGTTCGAATAATTCGATTTCCTCTCCTCCTCCACCTCTCCTGTTGTCCTTTACCACACCCTTCCTCTCACTCTCTCTATATCCTCTACACTATTATCATAATTTTTCCTATTTCGAGTCGGGTTCATGTTCTCCAAAATGCTAATTTTTCAAAATGCAGCCCTTTCTCTACATTTCTCTCGGTTTTTTAACTGCCTTTCTGTAATTAAACCAACATTGTTTCCACCAAAAAATTGTAGGCATTTTGGAAAGTCTTGACACGCGCGACTACTTTTATTACCGATTATATATGTTAGTTTTTGTTCATGCTTCATTTGCTACTGTTTTTTTTATTCTTCGCTTACAGGTCATAATTTCTTTTAGTTTTTAGCAATTTGGAGACTGTGAACCCCACTTCCTATATACTTCTTCCTGCTTATCACTTTTTCAATTGCCATAGCTGTTTTTTTGTTGGCTCAAGAGCCATACGATTGCCATGACCATCCGCTTGTCTCTGTGTCCATCTTGCAGAAGCCTAGAAGATTGTTTGCCCATTTTTTTCCGCGCGCG</canonical>
            <polymorphic>TATCGTTAAATGTGTCACCTCTTCGATCGAAGTGGGTCGAAAGTGTCGAGTTACACTCAGCGAGCCGTGCGCATTGGTTTCAAAAAGTAGGGATCTCAAAAATCACGGGTTCCATTCAAATCTGAAGTTCAAACTTCCATTTTTGACCCAAAGTCTTCAGGATTTTATCCTTCATTATGTTTCCATGCTTGTCTTGATTCTTATCGTGATGATGTCTTGTCCGTATGACTGACATATCCGTTCCCGGTCTTCAATTCCCCTATACCGTCAAACGGTTTTATGTCATTTTCTGCTTTCCTTCCTTTCTTCTTTAGATTTTTCACCGCGAATAATTACCTGCTTTCCTCAAACTTTATAATTATCTTCTCATCGAAGCTTCTTCCAAAATACATTCCATCTCCTCTTTTTTAGCTGAATATGGAGAGAAAAAATGCATGGAATTGTGGAGACCCGGTTCGAATAATTCGATTTCCTCTCCTCCTCCACCTCTCCTGTTGTCSTTTACCACACCCTTCCTCTCACTCTCTCTATATCCTCTACACTATTATCATAATTTTTCCTATTTCGAGTCGGGTTCATGTTCTCCAAAATGCTAATTTTTCAAAATGCAGCCCTTTCTCTACATTTCTCTCGGTTTTTTAACTGCCTTTCTGTAATTAAACCAACATTGTTTCCACCAAAAAATTGTAGGCATTTTGGAAAGTCTTGACACGCGCGACTACTTTTATTACCGATTATATATGTTAGTTTTTGTTCATGCTTCATTTGCTACTGTTTTTTTTATTCTTCGCTTACAGGTCATAATTTCTTTTAGTTTTTAGCAATTTGGAGACTGTGAACCCCACTTCCTATATACTTCTTCCTGCTTATCACTTTTTCAATTGCCATAGCTGTTTTTTTGTTGGCTCAAGAGCCATACGATTGCCATGACCATCCGCTTGTCTCTGTGTCCATCTTGCAGAAGCCTAGAAGATTGTTTGCCCATTTTTTTCCGCGCGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGCTGAATATGGAGAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATTACAGAAAGGCAGTTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTAGCTGAATATGGAGAGAAAAAATGCATGGAATTGTGGAGACCCGGTTCGAATAATTCGATTTCCTCTCCTCCTCCACCTCTCCTGTTGTCCTTTACCACACCCTTCCTCTCACTCTCTCTATATCCTCTACACTATTATCATAATTTTTCCTATTTCGAGTCGGGTTCATGTTCTCCAAAATGCTAATTTTTCAAAATGCAGCCCTTTCTCTACATTTCTCTCGGTTTTTTAACTGCCTTTCTGTAATT</canonical_amplicon>
		<polymorphic_amplicon>TTAGCTGAATATGGAGAGAAAAAATGCATGGAATTGTGGAGACCCGGTTCGAATAATTCGATTTCCTCTCCTCCTCCACCTCTCCTGTTGTCSTTTACCACACCCTTCCTCTCACTCTCTCTATATCCTCTACACTATTATCATAATTTTTCCTATTTCGAGTCGGGTTCATGTTCTCCAAAATGCTAATTTTTCAAAATGCAGCCCTTTCTCTACATTTCTCTCGGTTTTTTAACTGCCTTTCTGTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32337</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>138097</contig_pos>
        <strand>+</strand>
        <context>TAGTTTWTGT[A/T]CATGCTTCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTGACACGCGCGACTACTTTTATTACCGATTATATATGTTAGTTTTTGT</left_flank>
        <right_flank>CATGCTTCATTTGCTACTGTTTTTTTTATTCTTCGCTTACAGGTCATAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCCCTATACCGTCAAACGGTTTTATGTCATTTTCTGCTTTCCTTCCTTTCTTCTTTAGATTTTTCACCGCGAATAATTACCTGCTTTCCTCAAACTTTATAATTATCTTCTCATCGAAGCTTCTTCCAAAATACATTCCATCTCCTCTTTTTTAGCTGAATATGGAGAGAAAAAATGCATGGAATTGTGGAGACCCGGTTCGAATAATTCGATTTCCTCTCCTCCTCCACCTCTCCTGTTGTCCTTTACCACACCCTTCCTCTCACTCTCTCTATATCCTCTACACTATTATCATAATTTTTCCTATTTCGAGTCGGGTTCATGTTCTCCAAAATGCTAATTTTTCAAAATGCAGCCCTTTCTCTACATTTCTCTCGGTTTTTTAACTGCCTTTCTGTAATTAAACCAACATTGTTTCCACCAAAAAATTGTAGGCATTTTGGAAAGTCTTGACACGCGCGACTACTTTTATTACCGATTATATATGTTAGTTTTTGTTCATGCTTCATTTGCTACTGTTTTTTTTATTCTTCGCTTACAGGTCATAATTTCTTTTAGTTTTTAGCAATTTGGAGACTGTGAACCCCACTTCCTATATACTTCTTCCTGCTTATCACTTTTTCAATTGCCATAGCTGTTTTTTTGTTGGCTCAAGAGCCATACGATTGCCATGACCATCCGCTTGTCTCTGTGTCCATCTTGCAGAAGCCTAGAAGATTGTTTGCCCATTTTTTTCCGCGCGCGTTGCGTTGCACCTCACTATGCCCATCATCATAAGCATAGAGTGTATGGTGGTGTCGTTTTTCTCTCTGTTGTTTCTACCGAAACCCACAGTCTTTTTCCCGAATTTCCTTCTCTCTGCGATCCTCCGTACTTTTCAGAGTCTACTTTAGTTCCAGAAACGCACGCGGACGAGTCTTTCCGCAGTAGCGCATGATATCCCCCTCTTCGGCGATTTCGACGTTTTTCACACCGAGACCTATTTTATCCTAGACTCCC</canonical>
            <polymorphic>TCCCCTATACCGTCAAACGGTTTTATGTCATTTTCTGCTTTCCTTCCTTTCTTCTTTAGATTTTTCACCGCGAATAATTACCTGCTTTCCTCAAACTTTATAATTATCTTCTCATCGAAGCTTCTTCCAAAATACATTCCATCTCCTCTTTTTTAGCTGAATATGGAGAGAAAAAATGCATGGAATTGTGGAGACCCGGTTCGAATAATTCGATTTCCTCTCCTCCTCCACCTCTCCTGTTGTCCTTTACCACACCCTTCCTCTCACTCTCTCTATATCCTCTACACTATTATCATAATTTTTCCTATTTCGAGTCGGGTTCATGTTCTCCAAAATGCTAATTTTTCAAAATGCAGCCCTTTCTCTACATTTCTCTCGGTTTTTTAACTGCCTTTCTGTAATTAAACCAACATTGTTTCCACCAAAAAATTGTAGGCATTTTGGAAAGTCTTGACACGCGCGACTACTTTTATTACCGATTATATATGTTAGTTTTTGTWCATGCTTCATTTGCTACTGTTTTTTTTATTCTTCGCTTACAGGTCATAATTTCTTTTAGTTTTTAGCAATTTGGAGACTGTGAACCCCACTTCCTATATACTTCTTCCTGCTTATCACTTTTTCAATTGCCATAGCTGTTTTTTTGTTGGCTCAAGAGCCATACGATTGCCATGACCATCCGCTTGTCTCTGTGTCCATCTTGCAGAAGCCTAGAAGATTGTTTGCCCATTTTTTTCCGCGCGCGTTGCGTTGCACCTCACTATGCCCATCATCATAAGCATAGAGTGTATGGTGGTGTCGTTTTTCTCTCTGTTGTTTCTACCGAAACCCACAGTCTTTTTCCCGAATTTCCTTCTCTCTGCGATCCTCCGTACTTTTCAGAGTCTACTTTAGTTCCAGAAACGCACGCGGACGAGTCTTTCCGCAGTAGCGCATGATATCCCCCTCTTCGGCGATTTCGACGTTTTTCACACCGAGACCTATTTTATCCTAGACTCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCCCTTTCTCTACATTTCTCT</pcr_primer_p1>
		<pcr_primer_p2>GAAGTATATAGGAAGTGGGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCCCTTTCTCTACATTTCTCTCGGTTTTTTAACTGCCTTTCTGTAATTAAACCAACATTGTTTCCACCAAAAAATTGTAGGCATTTTGGAAAGTCTTGACACGCGCGACTACTTTTATTACCGATTATATATGTTAGTTTTTGTTCATGCTTCATTTGCTACTGTTTTTTTTATTCTTCGCTTACAGGTCATAATTTCTTTTAGTTTTTAGCAATTTGGAGACTGTGAACCCCACTTCCTATATACTTC</canonical_amplicon>
		<polymorphic_amplicon>AGCCCTTTCTCTACATTTCTCTCGGTTTTTTAACTGCCTTTCTGTAATTAAACCAACATTGTTTCCACCAAAAAATTGTAGGCATTTTGGAAAGTCTTGACACGCGCGACTACTTTTATTACCGATTATATATGTTAGTTTTTGTWCATGCTTCATTTGCTACTGTTTTTTTTATTCTTCGCTTACAGGTCATAATTTCTTTTAGTTTTTAGCAATTTGGAGACTGTGAACCCCACTTCCTATATACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32338</snp_id>
        <super_contig>c007401685.Contig1</super_contig>
        <contig_pos>161755</contig_pos>
        <strand>+</strand>
        <context>GTGTTGTGAA[A/G]GTCTTTTGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAGTTAAAAGTAATCTGATGAAAAACGGAACTTCTACCTGTGTTGTGAA</left_flank>
        <right_flank>GTCTTTTGATTTGCAGATATTTTGTCTTCAATCGGAGATTTGTTATCTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGGCTTTTGAAATCATTTTAAAAAGAAAAGAGAAGAAAAAACTCACAATGACTAAATAGACTGGACCGAGTAGTCAAGTGATTTGACCATTGCAATGCCATCCCTTTTATACTTGTACAGGTGTAATACCTTGATAGCACGTAGTACGGTAAGGCGGATGCCGAAAAATTCAAACCAGGAACCATTTCGCTTCTTTCTGCTATCTCCGCCCGCTTTTGTCTGTTACCTCTGTGTTCTGCCATTTTTCTGACAGTTTGACCTCGAAATGCGGCATTGGAGAGAGTAGTGATATTTATGAGAAGGAGAAGGAGACGAAAACAGTTTTGGAAAAGTGATAAAAAAGTAAGAAGGGATCGATGAGAAACGACATTGAAACTGAGAACAAGGCAGAAAAAAGGAAGTGTTTTTCGGTTTTCTCGTAGTAAATAGATGGATGATAACGGAAAAGTAGTTAAAAGTAATCTGATGAAAAACGGAACTTCTACCTGTGTTGTGAAGGTCTTTTGATTTGCAGATATTTTGTCTTCAATCGGAGATTTGTTATCTGTGGTAAAAAAGAAGGCAGAAATGAGTGTTCAACTGTTTAAAGCTGTGATACAATTTGAAAAGTGATGTATGGAATTTGAATTTTCGAATCTTGGAATCTTGGAATTTCGGAATCTTGGGATTTCCTAATTTTGGAATTTCGGAATCTTGGAATCTTGGAATTTTGGAATTTCGGAATCATGCATCATTAAATTTTTTGTAATTTCGGAATATTGGACTCGTAAAATTTTGGAATTTTGGATTCTCGGAATTTTGAATGTTGAAATCTTGGAATCCATGAATTATTGAAATTTTGGAATTTTAGAATTTCGGGATTTCGGAATTTCGGAAGGTTGGAATTTTAGATTCTCGAAACTTTGGGATTCTCGGAAATTTGGAATGTTCGAATCTTGAAATTTAAAAGTCTTGGAATTTTGGAATATTGGTATTGTGAAATTTTTGAATCTTTTAAT</canonical>
            <polymorphic>TAAGGCTTTTGAAATCATTTTAAAAAGAAAAGAGAAGAAAAAACTCACAATGACTAAATAGACTGGACCGAGTAGTCAAGTGATTTGACCATTGCAATGCCATCCCTTTTATACTTGTACAGGTGTAATACCTTGATAGCACGTAGTACGGTAAGGCGGATGCCGAAAAATTCAAACCAGGAACCATTTCGCTTCTTTCTGCTATCTCCGCCCGCTTTTGTCTGTTACCTCTGTGTTCTGCCATTTTTCTGACAGTTTGACCTCGAAATGCGGCATTGGAGAGAGTAGTGATATTTATGAGAAGGAGAAGGAGACGAAAACAGTTTTGGAAAAGTGATAAAAAAGTAAGAAGGGATCGATGAGAAACGACATTGAAACTGAGAACAAGGCAGAAAAAAGGAAGTGTTTTTCGGTTTTCTCGTAGTAAATAGATGGATGATAACGGAAAAGTAGTTAAAAGTAATCTGATGAAAAACGGAACTTCTACCTGTGTTGTGAARGTCTTTTGATTTGCAGATATTTTGTCTTCAATCGGAGATTTGTTATCTGTGGTAAAAAAGAAGGCAGAAATGAGTGTTCAACTGTTTAAAGCTGTGATACAATTTGAAAAGTGATGTATGGAATTTGAATTTTCGAATCTTGGAATCTTGGAATTTCGGAATCTTGGGATTTCCTAATTTTGGAATTTCGGAATCTTGGAATCTTGGAATTTTGGAATTTCGGAATCATGCATCATTAAATTTTTTGTAATTTCGGAATATTGGACTCGTAAAATTTTGGAATTTTGGATTCTCGGAATTTTGAATGTTGAAATCTTGGAATCCATGAATTATTGAAATTTTGGAATTTTAGAATTTCGGGATTTCGGAATTTCGGAAGGTTGGAATTTTAGATTCTCGAAACTTTGGGATTCTCGGAAATTTGGAATGTTCGAATCTTGAAATTTAAAAGTCTTGGAATTTTGGAATATTGGTATTGTGAAATTTTTGAATCTTTTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTAAGAAGGGATCGATGAGA</pcr_primer_p1>
		<pcr_primer_p2>AGCTTTAAACAGTTGAACACTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTAAGAAGGGATCGATGAGAAACGACATTGAAACTGAGAACAAGGCAGAAAAAAGGAAGTGTTTTTCGGTTTTCTCGTAGTAAATAGATGGATGATAACGGAAAAGTAGTTAAAAGTAATCTGATGAAAAACGGAACTTCTACCTGTGTTGTGAAGGTCTTTTGATTTGCAGATATTTTGTCTTCAATCGGAGATTTGTTATCTGTGGTAAAAAAGAAGGCAGAAATGAGTGTTCAACTGTTTAAAGCT</canonical_amplicon>
		<polymorphic_amplicon>AGTAAGAAGGGATCGATGAGAAACGACATTGAAACTGAGAACAAGGCAGAAAAAAGGAAGTGTTTTTCGGTTTTCTCGTAGTAAATAGATGGATGATAACGGAAAAGTAGTTAAAAGTAATCTGATGAAAAACGGAACTTCTACCTGTGTTGTGAARGTCTTTTGATTTGCAGATATTTTGTCTTCAATCGGAGATTTGTTATCTGTGGTAAAAAAGAAGGCAGAAATGAGTGTTCAACTGTTTAAAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32339</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>49117</contig_pos>
        <strand>+</strand>
        <context>AATAGGCTCC[C/T]GAGGACGACG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAATTCCAGCCATCCATCATCACATGCTCTTCTGATTTCAATAGGCTCC</left_flank>
        <right_flank>GAGGACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATTTCGATCATTCAAAAAAATTGAAGAAAATCATACAAATTGCACTTCTTTCGGAAACTTCCTTTTCAGATCGTTCGACTAGAATCATAGTGAAAAAAGAAGACTCGATTTGAAAAATGAGAGAAAAAAAATCATCTAATTGTTTTTCAACAAGTAATCCGGTTTCTTATCACATCATCGTCTAATTTTCACTTTATTGTAATCAAAAAGACACTGATTGTTTTTGAAACAATTTCTAGAGAAAACAATAGTGTATTAAAAATCTTGTTCAACATTTTTCCGTTTTGTAATCCGGTGAGAATTGCTCCCAAGCAGATGCAAGCATTCTGACCATTGAGAGAACCATATATCAGTTACTCCCGAAGAATCCAATCTCAAAACTTTGAGAATTTGAACGTTTCCCGGAATTTGAGGTCCCCAAAATCCACGAAATCCCATTAGGTCTCTTGAATTCCAGCCATCCATCATCACATGCTCTTCTGATTTCAATAGGCTCCCGAGGACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGATGACCAAGATGAAGAACTGAACTTCTTCCTTTATGATCAAACTCAATATAGAAAAGTTTCTTGGTTTTTGCTTTCTGGAGTTTTGCAAAAAAAGAGCGTGGTGTGTAATGCGAAATGAGGGGTTTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTCGAAGGGTCAAAACTTGTAAAAGCGAATCGATCTTACTTTTAACACTTTCTCTAACACTCAAACATCATTCACAAAAAAA</canonical>
            <polymorphic>ATATTTCGATCATTCAAAAAAATTGAAGAAAATCATACAAATTGCACTTCTTTCGGAAACTTCCTTTTCAGATCGTTCGACTAGAATCATAGTGAAAAAAGAAGACTCGATTTGAAAAATGAGAGAAAAAAAATCATCTAATTGTTTTTCAACAAGTAATCCGGTTTCTTATCACATCATCGTCTAATTTTCACTTTATTGTAATCAAAAAGACACTGATTGTTTTTGAAACAATTTCTAGAGAAAACAATAGTGTATTAAAAATCTTGTTCAACATTTTTCCGTTTTGTAATCCGGTGAGAATTGCTCCCAAGCAGATGCAAGCATTCTGACCATTGAGAGAACCATATATCAGTTACTCCCGAAGAATCCAATCTCAAAACTTTGAGAATTTGAACGTTTCCCGGAATTTGAGGTCCCCAAAATCCACGAAATCCCATTAGGTCTCTTGAATTCCAGCCATCCATCATCACATGCTCTTCTGATTTCAATAGGCTCCYGAGGACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGATGACCAAGATGAAGAACTGAACTTCTTCCTTTATGATCAAACTCAATATAGAAAAGTTTCTTGGTTTTTGCTTTCTGGAGTTTTGCAAAAAAAGAGCGTGGTGTGTAATGCGAAATGAGGGGTTTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTCGAAGGGTCAAAACTTGTAAAAGCGAATCGATCTTACTTTTAACACTTTCTCTAACACTCAAACATCATTCACAAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>498 354 148</canonical_bands>
                <polymorphic_bands>852 148</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>499 456 45</canonical_bands>
                <polymorphic_bands>544 456</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATATATCAGTTACTCCCGAAGA</pcr_primer_p1>
		<pcr_primer_p2>TGAGTTTGATCATAAAGGAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATATATCAGTTACTCCCGAAGAATCCAATCTCAAAACTTTGAGAATTTGAACGTTTCCCGGAATTTGAGGTCCCCAAAATCCACGAAATCCCATTAGGTCTCTTGAATTCCAGCCATCCATCATCACATGCTCTTCTGATTTCAATAGGCTCCCGAGGACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGATGACCAAGATGAAGAACTGAACTTCTTCCTTTATGATCAAACTCA</canonical_amplicon>
		<polymorphic_amplicon>CATATATCAGTTACTCCCGAAGAATCCAATCTCAAAACTTTGAGAATTTGAACGTTTCCCGGAATTTGAGGTCCCCAAAATCCACGAAATCCCATTAGGTCTCTTGAATTCCAGCCATCCATCATCACATGCTCTTCTGATTTCAATAGGCTCCYGAGGACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGATGACCAAGATGAAGAACTGAACTTCTTCCTTTATGATCAAACTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32340</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>49171</contig_pos>
        <strand>+</strand>
        <context>CCTCGGATGA[A/C]SAAGATGAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGATGA</left_flank>
        <right_flank>CAAGATGAAGAACTGAACTTCTTCCTTTATGATCAAACTCAATATAGAAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAACTTCCTTTTCAGATCGTTCGACTAGAATCATAGTGAAAAAAGAAGACTCGATTTGAAAAATGAGAGAAAAAAAATCATCTAATTGTTTTTCAACAAGTAATCCGGTTTCTTATCACATCATCGTCTAATTTTCACTTTATTGTAATCAAAAAGACACTGATTGTTTTTGAAACAATTTCTAGAGAAAACAATAGTGTATTAAAAATCTTGTTCAACATTTTTCCGTTTTGTAATCCGGTGAGAATTGCTCCCAAGCAGATGCAAGCATTCTGACCATTGAGAGAACCATATATCAGTTACTCCCGAAGAATCCAATCTCAAAACTTTGAGAATTTGAACGTTTCCCGGAATTTGAGGTCCCCAAAATCCACGAAATCCCATTAGGTCTCTTGAATTCCAGCCATCCATCATCACATGCTCTTCTGATTTCAATAGGCTCCCGAGGACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGATGACCAAGATGAAGAACTGAACTTCTTCCTTTATGATCAAACTCAATATAGAAAAGTTTCTTGGTTTTTGCTTTCTGGAGTTTTGCAAAAAAAGAGCGTGGTGTGTAATGCGAAATGAGGGGTTTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTCGAAGGGTCAAAACTTGTAAAAGCGAATCGATCTTACTTTTAACACTTTCTCTAACACTCAAACATCATTCACAAAAAAAAAACGAAAGCAATGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAAC</canonical>
            <polymorphic>GGAAACTTCCTTTTCAGATCGTTCGACTAGAATCATAGTGAAAAAAGAAGACTCGATTTGAAAAATGAGAGAAAAAAAATCATCTAATTGTTTTTCAACAAGTAATCCGGTTTCTTATCACATCATCGTCTAATTTTCACTTTATTGTAATCAAAAAGACACTGATTGTTTTTGAAACAATTTCTAGAGAAAACAATAGTGTATTAAAAATCTTGTTCAACATTTTTCCGTTTTGTAATCCGGTGAGAATTGCTCCCAAGCAGATGCAAGCATTCTGACCATTGAGAGAACCATATATCAGTTACTCCCGAAGAATCCAATCTCAAAACTTTGAGAATTTGAACGTTTCCCGGAATTTGAGGTCCCCAAAATCCACGAAATCCCATTAGGTCTCTTGAATTCCAGCCATCCATCATCACATGCTCTTCTGATTTCAATAGGCTCCCGAGGACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGATGAMCAAGATGAAGAACTGAACTTCTTCCTTTATGATCAAACTCAATATAGAAAAGTTTCTTGGTTTTTGCTTTCTGGAGTTTTGCAAAAAAAGAGCGTGGTGTGTAATGCGAAATGAGGGGTTTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTCGAAGGGTCAAAACTTGTAAAAGCGAATCGATCTTACTTTTAACACTTTCTCTAACACTCAAACATCATTCACAAAAAAAAAACGAAAGCAATGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCCCATTAGGTCTCTTGAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAATCATAAACCCCTCATTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATCCCATTAGGTCTCTTGAATTCCAGCCATCCATCATCACATGCTCTTCTGATTTCAATAGGCTCCCGAGGACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGATGACCAAGATGAAGAACTGAACTTCTTCCTTTATGATCAAACTCAATATAGAAAAGTTTCTTGGTTTTTGCTTTCTGGAGTTTTGCAAAAAAAGAGCGTGGTGTGTAATGCGAAATGAGGGGTTTATGATTTT</canonical_amplicon>
		<polymorphic_amplicon>AATCCCATTAGGTCTCTTGAATTCCAGCCATCCATCATCACATGCTCTTCTGATTTCAATAGGCTCCCGAGGACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGATGAMCAAGATGAAGAACTGAACTTCTTCCTTTATGATCAAACTCAATATAGAAAAGTTTCTTGGTTTTTGCTTTCTGGAGTTTTGCAAAAAAAGAGCGTGGTGTGTAATGCGAAATGAGGGGTTTATGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32341</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>49172</contig_pos>
        <strand>+</strand>
        <context>CTCGGATGAM[C/G]AAGATGAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGATGAC</left_flank>
        <right_flank>AAGATGAAGAACTGAACTTCTTCCTTTATGATCAAACTCAATATAGAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAACTTCCTTTTCAGATCGTTCGACTAGAATCATAGTGAAAAAAGAAGACTCGATTTGAAAAATGAGAGAAAAAAAATCATCTAATTGTTTTTCAACAAGTAATCCGGTTTCTTATCACATCATCGTCTAATTTTCACTTTATTGTAATCAAAAAGACACTGATTGTTTTTGAAACAATTTCTAGAGAAAACAATAGTGTATTAAAAATCTTGTTCAACATTTTTCCGTTTTGTAATCCGGTGAGAATTGCTCCCAAGCAGATGCAAGCATTCTGACCATTGAGAGAACCATATATCAGTTACTCCCGAAGAATCCAATCTCAAAACTTTGAGAATTTGAACGTTTCCCGGAATTTGAGGTCCCCAAAATCCACGAAATCCCATTAGGTCTCTTGAATTCCAGCCATCCATCATCACATGCTCTTCTGATTTCAATAGGCTCCCGAGGACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGATGACCAAGATGAAGAACTGAACTTCTTCCTTTATGATCAAACTCAATATAGAAAAGTTTCTTGGTTTTTGCTTTCTGGAGTTTTGCAAAAAAAGAGCGTGGTGTGTAATGCGAAATGAGGGGTTTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTCGAAGGGTCAAAACTTGTAAAAGCGAATCGATCTTACTTTTAACACTTTCTCTAACACTCAAACATCATTCACAAAAAAAAAACGAAAGCAATGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACG</canonical>
            <polymorphic>GAAACTTCCTTTTCAGATCGTTCGACTAGAATCATAGTGAAAAAAGAAGACTCGATTTGAAAAATGAGAGAAAAAAAATCATCTAATTGTTTTTCAACAAGTAATCCGGTTTCTTATCACATCATCGTCTAATTTTCACTTTATTGTAATCAAAAAGACACTGATTGTTTTTGAAACAATTTCTAGAGAAAACAATAGTGTATTAAAAATCTTGTTCAACATTTTTCCGTTTTGTAATCCGGTGAGAATTGCTCCCAAGCAGATGCAAGCATTCTGACCATTGAGAGAACCATATATCAGTTACTCCCGAAGAATCCAATCTCAAAACTTTGAGAATTTGAACGTTTCCCGGAATTTGAGGTCCCCAAAATCCACGAAATCCCATTAGGTCTCTTGAATTCCAGCCATCCATCATCACATGCTCTTCTGATTTCAATAGGCTCCCGAGGACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGATGACSAAGATGAAGAACTGAACTTCTTCCTTTATGATCAAACTCAATATAGAAAAGTTTCTTGGTTTTTGCTTTCTGGAGTTTTGCAAAAAAAGAGCGTGGTGTGTAATGCGAAATGAGGGGTTTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTCGAAGGGTCAAAACTTGTAAAAGCGAATCGATCTTACTTTTAACACTTTCTCTAACACTCAAACATCATTCACAAAAAAAAAACGAAAGCAATGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCCCATTAGGTCTCTTGAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAATCATAAACCCCTCATTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATCCCATTAGGTCTCTTGAATTCCAGCCATCCATCATCACATGCTCTTCTGATTTCAATAGGCTCCCGAGGACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGATGACCAAGATGAAGAACTGAACTTCTTCCTTTATGATCAAACTCAATATAGAAAAGTTTCTTGGTTTTTGCTTTCTGGAGTTTTGCAAAAAAAGAGCGTGGTGTGTAATGCGAAATGAGGGGTTTATGATTTT</canonical_amplicon>
		<polymorphic_amplicon>AATCCCATTAGGTCTCTTGAATTCCAGCCATCCATCATCACATGCTCTTCTGATTTCAATAGGCTCCCGAGGACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGATGACSAAGATGAAGAACTGAACTTCTTCCTTTATGATCAAACTCAATATAGAAAAGTTTCTTGGTTTTTGCTTTCTGGAGTTTTGCAAAAAAAGAGCGTGGTGTGTAATGCGAAATGAGGGGTTTATGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32342</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>49245</contig_pos>
        <strand>+</strand>
        <context>TTGCTTTCTG[A/G]AGTTTTGCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTTTATGATCAAACTCAATATAGAAAAGTTTCTTGGTTTTTGCTTTCTG</left_flank>
        <right_flank>AGTTTTGCAAAAAAAGAGCGTGGTGTGTAATGCGAAATGAGGGGTTTATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATCATCTAATTGTTTTTCAACAAGTAATCCGGTTTCTTATCACATCATCGTCTAATTTTCACTTTATTGTAATCAAAAAGACACTGATTGTTTTTGAAACAATTTCTAGAGAAAACAATAGTGTATTAAAAATCTTGTTCAACATTTTTCCGTTTTGTAATCCGGTGAGAATTGCTCCCAAGCAGATGCAAGCATTCTGACCATTGAGAGAACCATATATCAGTTACTCCCGAAGAATCCAATCTCAAAACTTTGAGAATTTGAACGTTTCCCGGAATTTGAGGTCCCCAAAATCCACGAAATCCCATTAGGTCTCTTGAATTCCAGCCATCCATCATCACATGCTCTTCTGATTTCAATAGGCTCCCGAGGACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGATGACCAAGATGAAGAACTGAACTTCTTCCTTTATGATCAAACTCAATATAGAAAAGTTTCTTGGTTTTTGCTTTCTGGAGTTTTGCAAAAAAAGAGCGTGGTGTGTAATGCGAAATGAGGGGTTTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTCGAAGGGTCAAAACTTGTAAAAGCGAATCGATCTTACTTTTAACACTTTCTCTAACACTCAAACATCATTCACAAAAAAAAAACGAAAGCAATGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACGTGGAGTACTAACCACTATACTAAGCAGGCCGAGAGTGAAAAGTCCAATTTGAGTTTATGAAGTTTGGCAAGTG</canonical>
            <polymorphic>AAAAATCATCTAATTGTTTTTCAACAAGTAATCCGGTTTCTTATCACATCATCGTCTAATTTTCACTTTATTGTAATCAAAAAGACACTGATTGTTTTTGAAACAATTTCTAGAGAAAACAATAGTGTATTAAAAATCTTGTTCAACATTTTTCCGTTTTGTAATCCGGTGAGAATTGCTCCCAAGCAGATGCAAGCATTCTGACCATTGAGAGAACCATATATCAGTTACTCCCGAAGAATCCAATCTCAAAACTTTGAGAATTTGAACGTTTCCCGGAATTTGAGGTCCCCAAAATCCACGAAATCCCATTAGGTCTCTTGAATTCCAGCCATCCATCATCACATGCTCTTCTGATTTCAATAGGCTCCCGAGGACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGATGACCAAGATGAAGAACTGAACTTCTTCCTTTATGATCAAACTCAATATAGAAAAGTTTCTTGGTTTTTGCTTTCTGRAGTTTTGCAAAAAAAGAGCGTGGTGTGTAATGCGAAATGAGGGGTTTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTCGAAGGGTCAAAACTTGTAAAAGCGAATCGATCTTACTTTTAACACTTTCTCTAACACTCAAACATCATTCACAAAAAAAAAACGAAAGCAATGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACGTGGAGTACTAACCACTATACTAAGCAGGCCGAGAGTGAAAAGTCCAATTTGAGTTTATGAAGTTTGGCAAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>276 127 124 123 110 103 87 50</canonical_bands>
                <polymorphic_bands>276 230 124 123 110 87 50</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTTCCTTTATGATCAAACTCA</pcr_primer_p1>
		<pcr_primer_p2>TTAATTGAATCTTTATCACATGAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTCTTCCTTTATGATCAAACTCAATATAGAAAAGTTTCTTGGTTTTTGCTTTCTGGAGTTTTGCAAAAAAAGAGCGTGGTGTGTAATGCGAAATGAGGGGTTTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAA</canonical_amplicon>
		<polymorphic_amplicon>TTCTTCCTTTATGATCAAACTCAATATAGAAAAGTTTCTTGGTTTTTGCTTTCTGRAGTTTTGCAAAAAAAGAGCGTGGTGTGTAATGCGAAATGAGGGGTTTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32343</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>49371</contig_pos>
        <strand>+</strand>
        <context>TTCTTTGTAA[A/T]TTTTTTTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAA</left_flank>
        <right_flank>TTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATTAAAAATCTTGTTCAACATTTTTCCGTTTTGTAATCCGGTGAGAATTGCTCCCAAGCAGATGCAAGCATTCTGACCATTGAGAGAACCATATATCAGTTACTCCCGAAGAATCCAATCTCAAAACTTTGAGAATTTGAACGTTTCCCGGAATTTGAGGTCCCCAAAATCCACGAAATCCCATTAGGTCTCTTGAATTCCAGCCATCCATCATCACATGCTCTTCTGATTTCAATAGGCTCCCGAGGACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGATGACCAAGATGAAGAACTGAACTTCTTCCTTTATGATCAAACTCAATATAGAAAAGTTTCTTGGTTTTTGCTTTCTGGAGTTTTGCAAAAAAAGAGCGTGGTGTGTAATGCGAAATGAGGGGTTTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTCGAAGGGTCAAAACTTGTAAAAGCGAATCGATCTTACTTTTAACACTTTCTCTAACACTCAAACATCATTCACAAAAAAAAAACGAAAGCAATGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACGTGGAGTACTAACCACTATACTAAGCAGGCCGAGAGTGAAAAGTCCAATTTGAGTTTATGAAGTTTGGCAAGTGCGTGTGTGTCACGTCCTCGCTGGTGCCCCTTCTTGTATGCCATGGCGCTCCCCTCTCAACCAGCGGTCTCGTGGTGTAGTGGTTATCACATCTGTCTAACACACAGAAGGTCGGTGGTTCGAGCCC</canonical>
            <polymorphic>GTATTAAAAATCTTGTTCAACATTTTTCCGTTTTGTAATCCGGTGAGAATTGCTCCCAAGCAGATGCAAGCATTCTGACCATTGAGAGAACCATATATCAGTTACTCCCGAAGAATCCAATCTCAAAACTTTGAGAATTTGAACGTTTCCCGGAATTTGAGGTCCCCAAAATCCACGAAATCCCATTAGGTCTCTTGAATTCCAGCCATCCATCATCACATGCTCTTCTGATTTCAATAGGCTCCCGAGGACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGATGACCAAGATGAAGAACTGAACTTCTTCCTTTATGATCAAACTCAATATAGAAAAGTTTCTTGGTTTTTGCTTTCTGGAGTTTTGCAAAAAAAGAGCGTGGTGTGTAATGCGAAATGAGGGGTTTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAAWTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTCGAAGGGTCAAAACTTGTAAAAGCGAATCGATCTTACTTTTAACACTTTCTCTAACACTCAAACATCATTCACAAAAAAAAAACGAAAGCAATGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACGTGGAGTACTAACCACTATACTAAGCAGGCCGAGAGTGAAAAGTCCAATTTGAGTTTATGAAGTTTGGCAAGTGCGTGTGTGTCACGTCCTCGCTGGTGCCCCTTCTTGTATGCCATGGCGCTCCCCTCTCAACCAGCGGTCTCGTGGTGTAGTGGTTATCACATCTGTCTAACACACAGAAGGTCGGTGGTTCGAGCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>288 242 154 88 63 47 44 35 18 12 9</canonical_bands>
                <polymorphic_bands>288 242 154 88 75 47 44 35 18 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATGATTTTGATTTCGAGGTTA</pcr_primer_p1>
		<pcr_primer_p2>GAAGCTTTTCTCTCGTTTGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTC</canonical_amplicon>
		<polymorphic_amplicon>TTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAAWTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32344</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>49401</contig_pos>
        <strand></strand>
        <context>TCGTATACTT[C/G]TTTGTCGTWT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTT</left_flank>
        <right_flank>TTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGTAATCCGGTGAGAATTGCTCCCAAGCAGATGCAAGCATTCTGACCATTGAGAGAACCATATATCAGTTACTCCCGAAGAATCCAATCTCAAAACTTTGAGAATTTGAACGTTTCCCGGAATTTGAGGTCCCCAAAATCCACGAAATCCCATTAGGTCTCTTGAATTCCAGCCATCCATCATCACATGCTCTTCTGATTTCAATAGGCTCCCGAGGACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGATGACCAAGATGAAGAACTGAACTTCTTCCTTTATGATCAAACTCAATATAGAAAAGTTTCTTGGTTTTTGCTTTCTGGAGTTTTGCAAAAAAAGAGCGTGGTGTGTAATGCGAAATGAGGGGTTTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTCGAAGGGTCAAAACTTGTAAAAGCGAATCGATCTTACTTTTAACACTTTCTCTAACACTCAAACATCATTCACAAAAAAAAAACGAAAGCAATGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACGTGGAGTACTAACCACTATACTAAGCAGGCCGAGAGTGAAAAGTCCAATTTGAGTTTATGAAGTTTGGCAAGTGCGTGTGTGTCACGTCCTCGCTGGTGCCCCTTCTTGTATGCCATGGCGCTCCCCTCTCAACCAGCGGTCTCGTGGTGTAGTGGTTATCACATCTGTCTAACACACAGAAGGTCGGTGGTTCGAGCCCGCCCGAGATCAGTCTTATTTTGTTTTAGTT</canonical>
            <polymorphic>TTTTGTAATCCGGTGAGAATTGCTCCCAAGCAGATGCAAGCATTCTGACCATTGAGAGAACCATATATCAGTTACTCCCGAAGAATCCAATCTCAAAACTTTGAGAATTTGAACGTTTCCCGGAATTTGAGGTCCCCAAAATCCACGAAATCCCATTAGGTCTCTTGAATTCCAGCCATCCATCATCACATGCTCTTCTGATTTCAATAGGCTCCCGAGGACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGATGACCAAGATGAAGAACTGAACTTCTTCCTTTATGATCAAACTCAATATAGAAAAGTTTCTTGGTTTTTGCTTTCTGGAGTTTTGCAAAAAAAGAGCGTGGTGTGTAATGCGAAATGAGGGGTTTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTSTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTCGAAGGGTCAAAACTTGTAAAAGCGAATCGATCTTACTTTTAACACTTTCTCTAACACTCAAACATCATTCACAAAAAAAAAACGAAAGCAATGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACGTGGAGTACTAACCACTATACTAAGCAGGCCGAGAGTGAAAAGTCCAATTTGAGTTTATGAAGTTTGGCAAGTGCGTGTGTGTCACGTCCTCGCTGGTGCCCCTTCTTGTATGCCATGGCGCTCCCCTCTCAACCAGCGGTCTCGTGGTGTAGTGGTTATCACATCTGTCTAACACACAGAAGGTCGGTGGTTCGAGCCCGCCCGAGATCAGTCTTATTTTGTTTTAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATGATTTTGATTTCGAGGTTA</pcr_primer_p1>
		<pcr_primer_p2>GAAGCTTTTCTCTCGTTTGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTC</canonical_amplicon>
		<polymorphic_amplicon>TTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTSTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32345</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>49410</contig_pos>
        <strand></strand>
        <context>TSTTTGTCGT[T/A]TAGTTCATGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGT</left_flank>
        <right_flank>TAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGGTGAGAATTGCTCCCAAGCAGATGCAAGCATTCTGACCATTGAGAGAACCATATATCAGTTACTCCCGAAGAATCCAATCTCAAAACTTTGAGAATTTGAACGTTTCCCGGAATTTGAGGTCCCCAAAATCCACGAAATCCCATTAGGTCTCTTGAATTCCAGCCATCCATCATCACATGCTCTTCTGATTTCAATAGGCTCCCGAGGACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGATGACCAAGATGAAGAACTGAACTTCTTCCTTTATGATCAAACTCAATATAGAAAAGTTTCTTGGTTTTTGCTTTCTGGAGTTTTGCAAAAAAAGAGCGTGGTGTGTAATGCGAAATGAGGGGTTTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTCGAAGGGTCAAAACTTGTAAAAGCGAATCGATCTTACTTTTAACACTTTCTCTAACACTCAAACATCATTCACAAAAAAAAAACGAAAGCAATGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACGTGGAGTACTAACCACTATACTAAGCAGGCCGAGAGTGAAAAGTCCAATTTGAGTTTATGAAGTTTGGCAAGTGCGTGTGTGTCACGTCCTCGCTGGTGCCCCTTCTTGTATGCCATGGCGCTCCCCTCTCAACCAGCGGTCTCGTGGTGTAGTGGTTATCACATCTGTCTAACACACAGAAGGTCGGTGGTTCGAGCCCGCCCGAGATCAGTCTTATTTTGTTTTAGTTGGTTTTTTC</canonical>
            <polymorphic>CCGGTGAGAATTGCTCCCAAGCAGATGCAAGCATTCTGACCATTGAGAGAACCATATATCAGTTACTCCCGAAGAATCCAATCTCAAAACTTTGAGAATTTGAACGTTTCCCGGAATTTGAGGTCCCCAAAATCCACGAAATCCCATTAGGTCTCTTGAATTCCAGCCATCCATCATCACATGCTCTTCTGATTTCAATAGGCTCCCGAGGACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGATGACCAAGATGAAGAACTGAACTTCTTCCTTTATGATCAAACTCAATATAGAAAAGTTTCTTGGTTTTTGCTTTCTGGAGTTTTGCAAAAAAAGAGCGTGGTGTGTAATGCGAAATGAGGGGTTTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTWTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTCGAAGGGTCAAAACTTGTAAAAGCGAATCGATCTTACTTTTAACACTTTCTCTAACACTCAAACATCATTCACAAAAAAAAAACGAAAGCAATGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACGTGGAGTACTAACCACTATACTAAGCAGGCCGAGAGTGAAAAGTCCAATTTGAGTTTATGAAGTTTGGCAAGTGCGTGTGTGTCACGTCCTCGCTGGTGCCCCTTCTTGTATGCCATGGCGCTCCCCTCTCAACCAGCGGTCTCGTGGTGTAGTGGTTATCACATCTGTCTAACACACAGAAGGTCGGTGGTTCGAGCCCGCCCGAGATCAGTCTTATTTTGTTTTAGTTGGTTTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATGATTTTGATTTCGAGGTTA</pcr_primer_p1>
		<pcr_primer_p2>GAAGCTTTTCTCTCGTTTGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTC</canonical_amplicon>
		<polymorphic_amplicon>TTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTWTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32346</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>49440</contig_pos>
        <strand>+</strand>
        <context>TCAATTAAGC[A/G]AATTTGCGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGC</left_flank>
        <right_flank>AATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCATTCTGACCATTGAGAGAACCATATATCAGTTACTCCCGAAGAATCCAATCTCAAAACTTTGAGAATTTGAACGTTTCCCGGAATTTGAGGTCCCCAAAATCCACGAAATCCCATTAGGTCTCTTGAATTCCAGCCATCCATCATCACATGCTCTTCTGATTTCAATAGGCTCCCGAGGACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGATGACCAAGATGAAGAACTGAACTTCTTCCTTTATGATCAAACTCAATATAGAAAAGTTTCTTGGTTTTTGCTTTCTGGAGTTTTGCAAAAAAAGAGCGTGGTGTGTAATGCGAAATGAGGGGTTTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTCGAAGGGTCAAAACTTGTAAAAGCGAATCGATCTTACTTTTAACACTTTCTCTAACACTCAAACATCATTCACAAAAAAAAAACGAAAGCAATGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACGTGGAGTACTAACCACTATACTAAGCAGGCCGAGAGTGAAAAGTCCAATTTGAGTTTATGAAGTTTGGCAAGTGCGTGTGTGTCACGTCCTCGCTGGTGCCCCTTCTTGTATGCCATGGCGCTCCCCTCTCAACCAGCGGTCTCGTGGTGTAGTGGTTATCACATCTGTCTAACACACAGAAGGTCGGTGGTTCGAGCCCGCCCGAGATCAGTCTTATTTTGTTTTAGTTGGTTTTTTCGTGTATGTTTCAGTGTTAGAGAAGGCGTTG</canonical>
            <polymorphic>GCATTCTGACCATTGAGAGAACCATATATCAGTTACTCCCGAAGAATCCAATCTCAAAACTTTGAGAATTTGAACGTTTCCCGGAATTTGAGGTCCCCAAAATCCACGAAATCCCATTAGGTCTCTTGAATTCCAGCCATCCATCATCACATGCTCTTCTGATTTCAATAGGCTCCCGAGGACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGATGACCAAGATGAAGAACTGAACTTCTTCCTTTATGATCAAACTCAATATAGAAAAGTTTCTTGGTTTTTGCTTTCTGGAGTTTTGCAAAAAAAGAGCGTGGTGTGTAATGCGAAATGAGGGGTTTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCRAATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTCGAAGGGTCAAAACTTGTAAAAGCGAATCGATCTTACTTTTAACACTTTCTCTAACACTCAAACATCATTCACAAAAAAAAAACGAAAGCAATGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACGTGGAGTACTAACCACTATACTAAGCAGGCCGAGAGTGAAAAGTCCAATTTGAGTTTATGAAGTTTGGCAAGTGCGTGTGTGTCACGTCCTCGCTGGTGCCCCTTCTTGTATGCCATGGCGCTCCCCTCTCAACCAGCGGTCTCGTGGTGTAGTGGTTATCACATCTGTCTAACACACAGAAGGTCGGTGGTTCGAGCCCGCCCGAGATCAGTCTTATTTTGTTTTAGTTGGTTTTTTCGTGTATGTTTCAGTGTTAGAGAAGGCGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>500 372 66 44 18</canonical_bands>
                <polymorphic_bands>872 66 44 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATGATTTTGATTTCGAGGTTA</pcr_primer_p1>
		<pcr_primer_p2>GAAGCTTTTCTCTCGTTTGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTC</canonical_amplicon>
		<polymorphic_amplicon>TTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCRAATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32347</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>49463</contig_pos>
        <strand>+</strand>
        <context>TTGTCAAATA[C/T]TCTGTCCCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATA</left_flank>
        <right_flank>TCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATATCAGTTACTCCCGAAGAATCCAATCTCAAAACTTTGAGAATTTGAACGTTTCCCGGAATTTGAGGTCCCCAAAATCCACGAAATCCCATTAGGTCTCTTGAATTCCAGCCATCCATCATCACATGCTCTTCTGATTTCAATAGGCTCCCGAGGACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGATGACCAAGATGAAGAACTGAACTTCTTCCTTTATGATCAAACTCAATATAGAAAAGTTTCTTGGTTTTTGCTTTCTGGAGTTTTGCAAAAAAAGAGCGTGGTGTGTAATGCGAAATGAGGGGTTTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTCGAAGGGTCAAAACTTGTAAAAGCGAATCGATCTTACTTTTAACACTTTCTCTAACACTCAAACATCATTCACAAAAAAAAAACGAAAGCAATGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACGTGGAGTACTAACCACTATACTAAGCAGGCCGAGAGTGAAAAGTCCAATTTGAGTTTATGAAGTTTGGCAAGTGCGTGTGTGTCACGTCCTCGCTGGTGCCCCTTCTTGTATGCCATGGCGCTCCCCTCTCAACCAGCGGTCTCGTGGTGTAGTGGTTATCACATCTGTCTAACACACAGAAGGTCGGTGGTTCGAGCCCGCCCGAGATCAGTCTTATTTTGTTTTAGTTGGTTTTTTCGTGTATGTTTCAGTGTTAGAGAAGGCGTTGAAAGTAAGATCGATTCGCTTTTA</canonical>
            <polymorphic>ATATATCAGTTACTCCCGAAGAATCCAATCTCAAAACTTTGAGAATTTGAACGTTTCCCGGAATTTGAGGTCCCCAAAATCCACGAAATCCCATTAGGTCTCTTGAATTCCAGCCATCCATCATCACATGCTCTTCTGATTTCAATAGGCTCCCGAGGACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGATGACCAAGATGAAGAACTGAACTTCTTCCTTTATGATCAAACTCAATATAGAAAAGTTTCTTGGTTTTTGCTTTCTGGAGTTTTGCAAAAAAAGAGCGTGGTGTGTAATGCGAAATGAGGGGTTTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATAYTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTCGAAGGGTCAAAACTTGTAAAAGCGAATCGATCTTACTTTTAACACTTTCTCTAACACTCAAACATCATTCACAAAAAAAAAACGAAAGCAATGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACGTGGAGTACTAACCACTATACTAAGCAGGCCGAGAGTGAAAAGTCCAATTTGAGTTTATGAAGTTTGGCAAGTGCGTGTGTGTCACGTCCTCGCTGGTGCCCCTTCTTGTATGCCATGGCGCTCCCCTCTCAACCAGCGGTCTCGTGGTGTAGTGGTTATCACATCTGTCTAACACACAGAAGGTCGGTGGTTCGAGCCCGCCCGAGATCAGTCTTATTTTGTTTTAGTTGGTTTTTTCGTGTATGTTTCAGTGTTAGAGAAGGCGTTGAAAGTAAGATCGATTCGCTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATGATTTTGATTTCGAGGTTA</pcr_primer_p1>
		<pcr_primer_p2>GAAGCTTTTCTCTCGTTTGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTC</canonical_amplicon>
		<polymorphic_amplicon>TTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATAYTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32348</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>49543</contig_pos>
        <strand>+</strand>
        <context>AGCTTCGAAG[G/T]GTCAAAACTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTCGAAG</left_flank>
        <right_flank>GTCAAAACTTGTAAAAGCGAATCGATCTTACTTTTAACACTTTCTCTAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACGAAATCCCATTAGGTCTCTTGAATTCCAGCCATCCATCATCACATGCTCTTCTGATTTCAATAGGCTCCCGAGGACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGATGACCAAGATGAAGAACTGAACTTCTTCCTTTATGATCAAACTCAATATAGAAAAGTTTCTTGGTTTTTGCTTTCTGGAGTTTTGCAAAAAAAGAGCGTGGTGTGTAATGCGAAATGAGGGGTTTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTCGAAGGGTCAAAACTTGTAAAAGCGAATCGATCTTACTTTTAACACTTTCTCTAACACTCAAACATCATTCACAAAAAAAAAACGAAAGCAATGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACGTGGAGTACTAACCACTATACTAAGCAGGCCGAGAGTGAAAAGTCCAATTTGAGTTTATGAAGTTTGGCAAGTGCGTGTGTGTCACGTCCTCGCTGGTGCCCCTTCTTGTATGCCATGGCGCTCCCCTCTCAACCAGCGGTCTCGTGGTGTAGTGGTTATCACATCTGTCTAACACACAGAAGGTCGGTGGTTCGAGCCCGCCCGAGATCAGTCTTATTTTGTTTTAGTTGGTTTTTTCGTGTATGTTTCAGTGTTAGAGAAGGCGTTGAAAGTAAGATCGATTCGCTTTTACAATATTGGACCATTCAAATCTTTTCTCACGTTCGATAGCCAATCGAAGAGTGACTCAACAATTAAGTTATCCCTCTAAT</canonical>
            <polymorphic>CCACGAAATCCCATTAGGTCTCTTGAATTCCAGCCATCCATCATCACATGCTCTTCTGATTTCAATAGGCTCCCGAGGACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGATGACCAAGATGAAGAACTGAACTTCTTCCTTTATGATCAAACTCAATATAGAAAAGTTTCTTGGTTTTTGCTTTCTGGAGTTTTGCAAAAAAAGAGCGTGGTGTGTAATGCGAAATGAGGGGTTTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTCGAAGKGTCAAAACTTGTAAAAGCGAATCGATCTTACTTTTAACACTTTCTCTAACACTCAAACATCATTCACAAAAAAAAAACGAAAGCAATGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACGTGGAGTACTAACCACTATACTAAGCAGGCCGAGAGTGAAAAGTCCAATTTGAGTTTATGAAGTTTGGCAAGTGCGTGTGTGTCACGTCCTCGCTGGTGCCCCTTCTTGTATGCCATGGCGCTCCCCTCTCAACCAGCGGTCTCGTGGTGTAGTGGTTATCACATCTGTCTAACACACAGAAGGTCGGTGGTTCGAGCCCGCCCGAGATCAGTCTTATTTTGTTTTAGTTGGTTTTTTCGTGTATGTTTCAGTGTTAGAGAAGGCGTTGAAAGTAAGATCGATTCGCTTTTACAATATTGGACCATTCAAATCTTTTCTCACGTTCGATAGCCAATCGAAGAGTGACTCAACAATTAAGTTATCCCTCTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTTTTGGTACACTTTGACTCT</pcr_primer_p1>
		<pcr_primer_p2>ACTCAAATTGGACTTTTCACTCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTCGAAGGGTCAAAACTTGTAAAAGCGAATCGATCTTACTTTTAACACTTTCTCTAACACTCAAACATCATTCACAAAAAAAAAACGAAAGCAATGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACGTGGAGTACTAACCACTATACTAAGCAGGCCGAGAGTGAAAAGTCCAATTTGAGT</canonical_amplicon>
		<polymorphic_amplicon>GTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTCGAAGKGTCAAAACTTGTAAAAGCGAATCGATCTTACTTTTAACACTTTCTCTAACACTCAAACATCATTCACAAAAAAAAAACGAAAGCAATGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACGTGGAGTACTAACCACTATACTAAGCAGGCCGAGAGTGAAAAGTCCAATTTGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32349</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>49565</contig_pos>
        <strand>+</strand>
        <context>TAAAAGCGAA[G/T]CGATCTTACT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCTATCAAACGAGAGAAAAGCTTCGAAGGGTCAAAACTTGTAAAAGCGAA</left_flank>
        <right_flank>CGATCTTACTTTTAACACTTTCTCTAACACTCAAACATCATTCACAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAATTCCAGCCATCCATCATCACATGCTCTTCTGATTTCAATAGGCTCCCGAGGACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGATGACCAAGATGAAGAACTGAACTTCTTCCTTTATGATCAAACTCAATATAGAAAAGTTTCTTGGTTTTTGCTTTCTGGAGTTTTGCAAAAAAAGAGCGTGGTGTGTAATGCGAAATGAGGGGTTTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTCGAAGGGTCAAAACTTGTAAAAGCGAATCGATCTTACTTTTAACACTTTCTCTAACACTCAAACATCATTCACAAAAAAAAAACGAAAGCAATGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACGTGGAGTACTAACCACTATACTAAGCAGGCCGAGAGTGAAAAGTCCAATTTGAGTTTATGAAGTTTGGCAAGTGCGTGTGTGTCACGTCCTCGCTGGTGCCCCTTCTTGTATGCCATGGCGCTCCCCTCTCAACCAGCGGTCTCGTGGTGTAGTGGTTATCACATCTGTCTAACACACAGAAGGTCGGTGGTTCGAGCCCGCCCGAGATCAGTCTTATTTTGTTTTAGTTGGTTTTTTCGTGTATGTTTCAGTGTTAGAGAAGGCGTTGAAAGTAAGATCGATTCGCTTTTACAATATTGGACCATTCAAATCTTTTCTCACGTTCGATAGCCAATCGAAGAGTGACTCAACAATTAAGTTATCCCTCTAATAAAGCTTGACTTCACAGACTTC</canonical>
            <polymorphic>TTGAATTCCAGCCATCCATCATCACATGCTCTTCTGATTTCAATAGGCTCCCGAGGACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGATGACCAAGATGAAGAACTGAACTTCTTCCTTTATGATCAAACTCAATATAGAAAAGTTTCTTGGTTTTTGCTTTCTGGAGTTTTGCAAAAAAAGAGCGTGGTGTGTAATGCGAAATGAGGGGTTTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTCGAAGGGTCAAAACTTGTAAAAGCGAAKCGATCTTACTTTTAACACTTTCTCTAACACTCAAACATCATTCACAAAAAAAAAACGAAAGCAATGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACGTGGAGTACTAACCACTATACTAAGCAGGCCGAGAGTGAAAAGTCCAATTTGAGTTTATGAAGTTTGGCAAGTGCGTGTGTGTCACGTCCTCGCTGGTGCCCCTTCTTGTATGCCATGGCGCTCCCCTCTCAACCAGCGGTCTCGTGGTGTAGTGGTTATCACATCTGTCTAACACACAGAAGGTCGGTGGTTCGAGCCCGCCCGAGATCAGTCTTATTTTGTTTTAGTTGGTTTTTTCGTGTATGTTTCAGTGTTAGAGAAGGCGTTGAAAGTAAGATCGATTCGCTTTTACAATATTGGACCATTCAAATCTTTTCTCACGTTCGATAGCCAATCGAAGAGTGACTCAACAATTAAGTTATCCCTCTAATAAAGCTTGACTTCACAGACTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>500 385 115</canonical_bands>
                <polymorphic_bands>885 115</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>241 219 218 86 80 57 46 28 14 11</canonical_bands>
                <polymorphic_bands>241 219 218 108 86 57 46 14 11</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>362 310 80 71 64 64 49</canonical_bands>
                <polymorphic_bands>362 310 144 71 64 49</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>362 310 135 113 80</canonical_bands>
                <polymorphic_bands>362 310 215 113</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGTTTTGGTACACTTTGACTCT</pcr_primer_p1>
		<pcr_primer_p2>ACTCAAATTGGACTTTTCACTCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTCGAAGGGTCAAAACTTGTAAAAGCGAATCGATCTTACTTTTAACACTTTCTCTAACACTCAAACATCATTCACAAAAAAAAAACGAAAGCAATGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACGTGGAGTACTAACCACTATACTAAGCAGGCCGAGAGTGAAAAGTCCAATTTGAGT</canonical_amplicon>
		<polymorphic_amplicon>GTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTCGAAGGGTCAAAACTTGTAAAAGCGAAKCGATCTTACTTTTAACACTTTCTCTAACACTCAAACATCATTCACAAAAAAAAAACGAAAGCAATGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACGTGGAGTACTAACCACTATACTAAGCAGGCCGAGAGTGAAAAGTCCAATTTGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32350</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>49583</contig_pos>
        <strand>+</strand>
        <context>ACTTTTAACA[C/T]TTTCTCTAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCTTCGAAGGGTCAAAACTTGTAAAAGCGAATCGATCTTACTTTTAACA</left_flank>
        <right_flank>TTTCTCTAACACTCAAACATCATTCACAAAAAAAAAACGAAAGCAATGCC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATCACATGCTCTTCTGATTTCAATAGGCTCCCGAGGACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGATGACCAAGATGAAGAACTGAACTTCTTCCTTTATGATCAAACTCAATATAGAAAAGTTTCTTGGTTTTTGCTTTCTGGAGTTTTGCAAAAAAAGAGCGTGGTGTGTAATGCGAAATGAGGGGTTTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTCGAAGGGTCAAAACTTGTAAAAGCGAATCGATCTTACTTTTAACACTTTCTCTAACACTCAAACATCATTCACAAAAAAAAAACGAAAGCAATGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACGTGGAGTACTAACCACTATACTAAGCAGGCCGAGAGTGAAAAGTCCAATTTGAGTTTATGAAGTTTGGCAAGTGCGTGTGTGTCACGTCCTCGCTGGTGCCCCTTCTTGTATGCCATGGCGCTCCCCTCTCAACCAGCGGTCTCGTGGTGTAGTGGTTATCACATCTGTCTAACACACAGAAGGTCGGTGGTTCGAGCCCGCCCGAGATCAGTCTTATTTTGTTTTAGTTGGTTTTTTCGTGTATGTTTCAGTGTTAGAGAAGGCGTTGAAAGTAAGATCGATTCGCTTTTACAATATTGGACCATTCAAATCTTTTCTCACGTTCGATAGCCAATCGAAGAGTGACTCAACAATTAAGTTATCCCTCTAATAAAGCTTGACTTCACAGACTTCAGAACTCAAAAACCATTA</canonical>
            <polymorphic>TCATCACATGCTCTTCTGATTTCAATAGGCTCCCGAGGACGACGACGTTGGTCTTCTGTTTCCACGTGGTGGCTGTTCCTCGGATGACCAAGATGAAGAACTGAACTTCTTCCTTTATGATCAAACTCAATATAGAAAAGTTTCTTGGTTTTTGCTTTCTGGAGTTTTGCAAAAAAAGAGCGTGGTGTGTAATGCGAAATGAGGGGTTTATGATTTTGATTTCGAGGTTATGTATTCGATTTTTATAGGTTCGGAGATTTTCATGAAAATAGTAATTTTCTTTGTAATTTTTTTTTCTCATTTCAAATCGTATACTTCTTTGTCGTTTAGTTCATGTGATAAAGATTCAATTAAGCAAATTTGCGATACTTGTCAAATATTCTGTCCCGAGCAATTGGTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTCGAAGGGTCAAAACTTGTAAAAGCGAATCGATCTTACTTTTAACAYTTTCTCTAACACTCAAACATCATTCACAAAAAAAAAACGAAAGCAATGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACGTGGAGTACTAACCACTATACTAAGCAGGCCGAGAGTGAAAAGTCCAATTTGAGTTTATGAAGTTTGGCAAGTGCGTGTGTGTCACGTCCTCGCTGGTGCCCCTTCTTGTATGCCATGGCGCTCCCCTCTCAACCAGCGGTCTCGTGGTGTAGTGGTTATCACATCTGTCTAACACACAGAAGGTCGGTGGTTCGAGCCCGCCCGAGATCAGTCTTATTTTGTTTTAGTTGGTTTTTTCGTGTATGTTTCAGTGTTAGAGAAGGCGTTGAAAGTAAGATCGATTCGCTTTTACAATATTGGACCATTCAAATCTTTTCTCACGTTCGATAGCCAATCGAAGAGTGACTCAACAATTAAGTTATCCCTCTAATAAAGCTTGACTTCACAGACTTCAGAACTCAAAAACCATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>149 113 89 67 62 58 52 52 48 41 36 26 24 23 15 14 13 13 12 12 12 10 7 7 6 6 5 4 4 3 3 3 3 2 2 2 2</canonical_bands>
                <polymorphic_bands>149 113 101 67 62 58 52 52 48 41 36 26 24 23 15 14 13 13 12 12 10 7 7 6 6 5 4 4 3 3 3 3 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGTTTTGGTACACTTTGACTCT</pcr_primer_p1>
		<pcr_primer_p2>ACTCAAATTGGACTTTTCACTCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTCGAAGGGTCAAAACTTGTAAAAGCGAATCGATCTTACTTTTAACACTTTCTCTAACACTCAAACATCATTCACAAAAAAAAAACGAAAGCAATGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACGTGGAGTACTAACCACTATACTAAGCAGGCCGAGAGTGAAAAGTCCAATTTGAGT</canonical_amplicon>
		<polymorphic_amplicon>GTGTTTTGGTACACTTTGACTCTCATGGGTTATGGCTATCAAACGAGAGAAAAGCTTCGAAGGGTCAAAACTTGTAAAAGCGAATCGATCTTACTTTTAACAYTTTCTCTAACACTCAAACATCATTCACAAAAAAAAAACGAAAGCAATGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACGTGGAGTACTAACCACTATACTAAGCAGGCCGAGAGTGAAAAGTCCAATTTGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32351</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>58511</contig_pos>
        <strand>+</strand>
        <context>AATTCATTCA[C/T]YTTGGTGTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGAACCAAAATGTGATGAAGGTTGGCTCACTTTCCAGAGAATTCATTCA</left_flank>
        <right_flank>CTTGGTGTGTCTTGGTAAGAGCCCCTTGTGGTCCTCCTCTGCAATCAAAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAACAATCCAACCCTCAACTTCCCGGAAGTTTCTCAACACTAAAATCTCTCCTCTCCTTTAAAACCCCATCATTCTTCTCCCACCTTCACTTCGGATCTTCAGTATGAAGTTACTTTGCCTCCTGATCCTATTCCTTGCCCTAGTGTCTTTAGCATCTGCTCACAGACATCGTCATCATAGACATGGCAAATTCACTGGAAAGAGGCCAAAGAAGATCGTTAAAATTATCCATGTTGGAGGAGGAAACAACTTCCATGGACCTAAAAAAGTGACCACACCACCGGCAGCGTCCTCGTCTTCTTCTTCGTCATCCTCGTCTTCAGAAGAGGTCCCTCCAGCATTTGACACTGATAACGAGGAAGTCAAAACTACACTGCCTGCTCCACCACCAACCACAACTACAAAAACTACTACTACCACCACCACCACTACCACAACTAAAAAACCAGAACCAAAATGTGATGAAGGTTGGCTCACTTTCCAGAGAATTCATTCACCTTGGTGTGTCTTGGTAAGAGCCCCTTGTGGTCCTCCTCTGCAATCAAAATTAATAATTTTCTAGGTCGGAAACAAAGGTGCCAATAACCATCAGCTCACTCAACCGGAGGCTGAAAAAGTCTGCAAACAATTCCAGGCGACACTTACCGGACTCACGAATGATGACGAGCGTAAGCAAATCGCTAACGAGGCTCTTCACCAGTTGGGAGAGATCGGCATTGAGATGGGTGCAGTTTGGCTTGGTGCCAAGACTCGAGCCGCGTGTAAGTCAGAGAGTTGCGGAATACACGATACTTTTGAATGGAGCGATGGATCAACGTCGGGAACTGGTGGCTTTGTATTCGGAAAGAATGAACCGGATGATGAGATCTATCCGTGAGTCACTGAAAAACTGAAAAATTTAATATTTAGTGTTACAGAGGAAATCACGCTTGCCTTCAGCAAATTATCATGAGCCCAACTTTTGTTCCAAGCACAGATGAGGAGAAAGAAATGAAAA</canonical>
            <polymorphic>ATAAACAATCCAACCCTCAACTTCCCGGAAGTTTCTCAACACTAAAATCTCTCCTCTCCTTTAAAACCCCATCATTCTTCTCCCACCTTCACTTCGGATCTTCAGTATGAAGTTACTTTGCCTCCTGATCCTATTCCTTGCCCTAGTGTCTTTAGCATCTGCTCACAGACATCGTCATCATAGACATGGCAAATTCACTGGAAAGAGGCCAAAGAAGATCGTTAAAATTATCCATGTTGGAGGAGGAAACAACTTCCATGGACCTAAAAAAGTGACCACACCACCGGCAGCGTCCTCGTCTTCTTCTTCGTCATCCTCGTCTTCAGAAGAGGTCCCTCCAGCATTTGACACTGATAACGAGGAAGTCAAAACTACACTGCCTGCTCCACCACCAACCACAACTACAAAAACTACTACTACCACCACCACCACTACCACAACTAAAAAACCAGAACCAAAATGTGATGAAGGTTGGCTCACTTTCCAGAGAATTCATTCAYCTTGGTGTGTCTTGGTAAGAGCCCCTTGTGGTCCTCCTCTGCAATCAAAATTAATAATTTTCTAGGTCGGAAACAAAGGTGCCAATAACCATCAGCTCACTCAACCGGAGGCTGAAAAAGTCTGCAAACAATTCCAGGCGACACTTACCGGACTCACGAATGATGACGAGCGTAAGCAAATCGCTAACGAGGCTCTTCACCAGTTGGGAGAGATCGGCATTGAGATGGGTGCAGTTTGGCTTGGTGCCAAGACTCGAGCCGCGTGTAAGTCAGAGAGTTGCGGAATACACGATACTTTTGAATGGAGCGATGGATCAACGTCGGGAACTGGTGGCTTTGTATTCGGAAAGAATGAACCGGATGATGAGATCTATCCGTGAGTCACTGAAAAACTGAAAAATTTAATATTTAGTGTTACAGAGGAAATCACGCTTGCCTTCAGCAAATTATCATGAGCCCAACTTTTGTTCCAAGCACAGATGAGGAGAAAGAAATGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACNNNNGTG</site>
                <isoschizomers>
                    <enzyme>AleI</enzyme>
                    <enzyme>OliI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>500 256 244</canonical_bands>
                <polymorphic_bands>744 256</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>500 256 244</canonical_bands>
                <polymorphic_bands>744 256</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>77 67 57 51 47 46 44 44 44 43 41 32 32 30 27 26 24 24 24 21 20 19 18 17 15 15 15 13 12 8 7 6 6 5 4 3 3 3 3 3 2 2</canonical_bands>
                <polymorphic_bands>77 67 57 51 47 46 44 44 44 43 41 32 32 30 28 27 26 24 24 24 21 19 18 17 15 15 15 13 12 7 6 6 5 4 3 3 3 3 3 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>319 278 220 183</canonical_bands>
                <polymorphic_bands>539 278 183</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAACGAGGAAGTCAAAACTACAC</pcr_primer_p1>
		<pcr_primer_p2>GTTGAGTGAGCTGATGGTTATT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAACGAGGAAGTCAAAACTACACTGCCTGCTCCACCACCAACCACAACTACAAAAACTACTACTACCACCACCACCACTACCACAACTAAAAAACCAGAACCAAAATGTGATGAAGGTTGGCTCACTTTCCAGAGAATTCATTCACCTTGGTGTGTCTTGGTAAGAGCCCCTTGTGGTCCTCCTCTGCAATCAAAATTAATAATTTTCTAGGTCGGAAACAAAGGTGCCAATAACCATCAGCTCACTCAAC</canonical_amplicon>
		<polymorphic_amplicon>TAACGAGGAAGTCAAAACTACACTGCCTGCTCCACCACCAACCACAACTACAAAAACTACTACTACCACCACCACCACTACCACAACTAAAAAACCAGAACCAAAATGTGATGAAGGTTGGCTCACTTTCCAGAGAATTCATTCAYCTTGGTGTGTCTTGGTAAGAGCCCCTTGTGGTCCTCCTCTGCAATCAAAATTAATAATTTTCTAGGTCGGAAACAAAGGTGCCAATAACCATCAGCTCACTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32352</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>58512</contig_pos>
        <strand>+</strand>
        <context>ATTCATTCAY[C/T]TTGGTGTGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAACCAAAATGTGATGAAGGTTGGCTCACTTTCCAGAGAATTCATTCAC</left_flank>
        <right_flank>TTGGTGTGTCTTGGTAAGAGCCCCTTGTGGTCCTCCTCTGCAATCAAAAT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAACAATCCAACCCTCAACTTCCCGGAAGTTTCTCAACACTAAAATCTCTCCTCTCCTTTAAAACCCCATCATTCTTCTCCCACCTTCACTTCGGATCTTCAGTATGAAGTTACTTTGCCTCCTGATCCTATTCCTTGCCCTAGTGTCTTTAGCATCTGCTCACAGACATCGTCATCATAGACATGGCAAATTCACTGGAAAGAGGCCAAAGAAGATCGTTAAAATTATCCATGTTGGAGGAGGAAACAACTTCCATGGACCTAAAAAAGTGACCACACCACCGGCAGCGTCCTCGTCTTCTTCTTCGTCATCCTCGTCTTCAGAAGAGGTCCCTCCAGCATTTGACACTGATAACGAGGAAGTCAAAACTACACTGCCTGCTCCACCACCAACCACAACTACAAAAACTACTACTACCACCACCACCACTACCACAACTAAAAAACCAGAACCAAAATGTGATGAAGGTTGGCTCACTTTCCAGAGAATTCATTCACCTTGGTGTGTCTTGGTAAGAGCCCCTTGTGGTCCTCCTCTGCAATCAAAATTAATAATTTTCTAGGTCGGAAACAAAGGTGCCAATAACCATCAGCTCACTCAACCGGAGGCTGAAAAAGTCTGCAAACAATTCCAGGCGACACTTACCGGACTCACGAATGATGACGAGCGTAAGCAAATCGCTAACGAGGCTCTTCACCAGTTGGGAGAGATCGGCATTGAGATGGGTGCAGTTTGGCTTGGTGCCAAGACTCGAGCCGCGTGTAAGTCAGAGAGTTGCGGAATACACGATACTTTTGAATGGAGCGATGGATCAACGTCGGGAACTGGTGGCTTTGTATTCGGAAAGAATGAACCGGATGATGAGATCTATCCGTGAGTCACTGAAAAACTGAAAAATTTAATATTTAGTGTTACAGAGGAAATCACGCTTGCCTTCAGCAAATTATCATGAGCCCAACTTTTGTTCCAAGCACAGATGAGGAGAAAGAAATGAAAAG</canonical>
            <polymorphic>TAAACAATCCAACCCTCAACTTCCCGGAAGTTTCTCAACACTAAAATCTCTCCTCTCCTTTAAAACCCCATCATTCTTCTCCCACCTTCACTTCGGATCTTCAGTATGAAGTTACTTTGCCTCCTGATCCTATTCCTTGCCCTAGTGTCTTTAGCATCTGCTCACAGACATCGTCATCATAGACATGGCAAATTCACTGGAAAGAGGCCAAAGAAGATCGTTAAAATTATCCATGTTGGAGGAGGAAACAACTTCCATGGACCTAAAAAAGTGACCACACCACCGGCAGCGTCCTCGTCTTCTTCTTCGTCATCCTCGTCTTCAGAAGAGGTCCCTCCAGCATTTGACACTGATAACGAGGAAGTCAAAACTACACTGCCTGCTCCACCACCAACCACAACTACAAAAACTACTACTACCACCACCACCACTACCACAACTAAAAAACCAGAACCAAAATGTGATGAAGGTTGGCTCACTTTCCAGAGAATTCATTCACYTTGGTGTGTCTTGGTAAGAGCCCCTTGTGGTCCTCCTCTGCAATCAAAATTAATAATTTTCTAGGTCGGAAACAAAGGTGCCAATAACCATCAGCTCACTCAACCGGAGGCTGAAAAAGTCTGCAAACAATTCCAGGCGACACTTACCGGACTCACGAATGATGACGAGCGTAAGCAAATCGCTAACGAGGCTCTTCACCAGTTGGGAGAGATCGGCATTGAGATGGGTGCAGTTTGGCTTGGTGCCAAGACTCGAGCCGCGTGTAAGTCAGAGAGTTGCGGAATACACGATACTTTTGAATGGAGCGATGGATCAACGTCGGGAACTGGTGGCTTTGTATTCGGAAAGAATGAACCGGATGATGAGATCTATCCGTGAGTCACTGAAAAACTGAAAAATTTAATATTTAGTGTTACAGAGGAAATCACGCTTGCCTTCAGCAAATTATCATGAGCCCAACTTTTGTTCCAAGCACAGATGAGGAGAAAGAAATGAAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>501 255 244</canonical_bands>
                <polymorphic_bands>745 255</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>501 255 244</canonical_bands>
                <polymorphic_bands>745 255</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAACGAGGAAGTCAAAACTACAC</pcr_primer_p1>
		<pcr_primer_p2>GTTGAGTGAGCTGATGGTTATT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAACGAGGAAGTCAAAACTACACTGCCTGCTCCACCACCAACCACAACTACAAAAACTACTACTACCACCACCACCACTACCACAACTAAAAAACCAGAACCAAAATGTGATGAAGGTTGGCTCACTTTCCAGAGAATTCATTCACCTTGGTGTGTCTTGGTAAGAGCCCCTTGTGGTCCTCCTCTGCAATCAAAATTAATAATTTTCTAGGTCGGAAACAAAGGTGCCAATAACCATCAGCTCACTCAAC</canonical_amplicon>
		<polymorphic_amplicon>TAACGAGGAAGTCAAAACTACACTGCCTGCTCCACCACCAACCACAACTACAAAAACTACTACTACCACCACCACCACTACCACAACTAAAAAACCAGAACCAAAATGTGATGAAGGTTGGCTCACTTTCCAGAGAATTCATTCACYTTGGTGTGTCTTGGTAAGAGCCCCTTGTGGTCCTCCTCTGCAATCAAAATTAATAATTTTCTAGGTCGGAAACAAAGGTGCCAATAACCATCAGCTCACTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32353</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>58591</contig_pos>
        <strand>+</strand>
        <context>GAAACAAAGG[C/T]GCCAATAACC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTCCTCCTCTGCAATCAAAATTAATAATTTTCTAGGTCGGAAACAAAGG</left_flank>
        <right_flank>GCCAATAACCATCAGCTCACTCAACCGGAGGCTGAAAAAGTCTGCAAACA</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCCACCTTCACTTCGGATCTTCAGTATGAAGTTACTTTGCCTCCTGATCCTATTCCTTGCCCTAGTGTCTTTAGCATCTGCTCACAGACATCGTCATCATAGACATGGCAAATTCACTGGAAAGAGGCCAAAGAAGATCGTTAAAATTATCCATGTTGGAGGAGGAAACAACTTCCATGGACCTAAAAAAGTGACCACACCACCGGCAGCGTCCTCGTCTTCTTCTTCGTCATCCTCGTCTTCAGAAGAGGTCCCTCCAGCATTTGACACTGATAACGAGGAAGTCAAAACTACACTGCCTGCTCCACCACCAACCACAACTACAAAAACTACTACTACCACCACCACCACTACCACAACTAAAAAACCAGAACCAAAATGTGATGAAGGTTGGCTCACTTTCCAGAGAATTCATTCACCTTGGTGTGTCTTGGTAAGAGCCCCTTGTGGTCCTCCTCTGCAATCAAAATTAATAATTTTCTAGGTCGGAAACAAAGGTGCCAATAACCATCAGCTCACTCAACCGGAGGCTGAAAAAGTCTGCAAACAATTCCAGGCGACACTTACCGGACTCACGAATGATGACGAGCGTAAGCAAATCGCTAACGAGGCTCTTCACCAGTTGGGAGAGATCGGCATTGAGATGGGTGCAGTTTGGCTTGGTGCCAAGACTCGAGCCGCGTGTAAGTCAGAGAGTTGCGGAATACACGATACTTTTGAATGGAGCGATGGATCAACGTCGGGAACTGGTGGCTTTGTATTCGGAAAGAATGAACCGGATGATGAGATCTATCCGTGAGTCACTGAAAAACTGAAAAATTTAATATTTAGTGTTACAGAGGAAATCACGCTTGCCTTCAGCAAATTATCATGAGCCCAACTTTTGTTCCAAGCACAGATGAGGAGAAAGAAATGAAAAGCAAATTCCAACACGGAGAATTGGATAAGTACAAGTGTGAGAGTCCAGAACATCCTAAGACCAGATTGTACGCATGTGGA</canonical>
            <polymorphic>TCCCACCTTCACTTCGGATCTTCAGTATGAAGTTACTTTGCCTCCTGATCCTATTCCTTGCCCTAGTGTCTTTAGCATCTGCTCACAGACATCGTCATCATAGACATGGCAAATTCACTGGAAAGAGGCCAAAGAAGATCGTTAAAATTATCCATGTTGGAGGAGGAAACAACTTCCATGGACCTAAAAAAGTGACCACACCACCGGCAGCGTCCTCGTCTTCTTCTTCGTCATCCTCGTCTTCAGAAGAGGTCCCTCCAGCATTTGACACTGATAACGAGGAAGTCAAAACTACACTGCCTGCTCCACCACCAACCACAACTACAAAAACTACTACTACCACCACCACCACTACCACAACTAAAAAACCAGAACCAAAATGTGATGAAGGTTGGCTCACTTTCCAGAGAATTCATTCACCTTGGTGTGTCTTGGTAAGAGCCCCTTGTGGTCCTCCTCTGCAATCAAAATTAATAATTTTCTAGGTCGGAAACAAAGGYGCCAATAACCATCAGCTCACTCAACCGGAGGCTGAAAAAGTCTGCAAACAATTCCAGGCGACACTTACCGGACTCACGAATGATGACGAGCGTAAGCAAATCGCTAACGAGGCTCTTCACCAGTTGGGAGAGATCGGCATTGAGATGGGTGCAGTTTGGCTTGGTGCCAAGACTCGAGCCGCGTGTAAGTCAGAGAGTTGCGGAATACACGATACTTTTGAATGGAGCGATGGATCAACGTCGGGAACTGGTGGCTTTGTATTCGGAAAGAATGAACCGGATGATGAGATCTATCCGTGAGTCACTGAAAAACTGAAAAATTTAATATTTAGTGTTACAGAGGAAATCACGCTTGCCTTCAGCAAATTATCATGAGCCCAACTTTTGTTCCAAGCACAGATGAGGAGAAAGAAATGAAAAGCAAATTCCAACACGGAGAATTGGATAAGTACAAGTGTGAGAGTCCAGAACATCCTAAGACCAGATTGTACGCATGTGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>498 337 165</canonical_bands>
                <polymorphic_bands>663 337</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>77 67 57 51 47 46 44 44 43 39 37 32 32 30 27 26 24 24 24 21 20 19 18 17 15 15 15 13 12 8 7 6 6 5 5 4 3 3 3 3 3 2 2 2 2</canonical_bands>
                <polymorphic_bands>77 69 67 57 47 46 44 44 43 39 37 32 32 30 27 26 24 24 24 21 20 19 17 15 15 15 13 12 8 7 6 6 5 5 4 3 3 3 3 3 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGAAGTCAAAACTACACTGC</pcr_primer_p1>
		<pcr_primer_p2>AATTGTTTGCAGACTTTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>275</pcr_amplicon_size>
		<canonical_amplicon>GAGGAAGTCAAAACTACACTGCCTGCTCCACCACCAACCACAACTACAAAAACTACTACTACCACCACCACCACTACCACAACTAAAAAACCAGAACCAAAATGTGATGAAGGTTGGCTCACTTTCCAGAGAATTCATTCACCTTGGTGTGTCTTGGTAAGAGCCCCTTGTGGTCCTCCTCTGCAATCAAAATTAATAATTTTCTAGGTCGGAAACAAAGGTGCCAATAACCATCAGCTCACTCAACCGGAGGCTGAAAAAGTCTGCAAACAATT</canonical_amplicon>
		<polymorphic_amplicon>GAGGAAGTCAAAACTACACTGCCTGCTCCACCACCAACCACAACTACAAAAACTACTACTACCACCACCACCACTACCACAACTAAAAAACCAGAACCAAAATGTGATGAAGGTTGGCTCACTTTCCAGAGAATTCATTCACCTTGGTGTGTCTTGGTAAGAGCCCCTTGTGGTCCTCCTCTGCAATCAAAATTAATAATTTTCTAGGTCGGAAACAAAGGYGCCAATAACCATCAGCTCACTCAACCGGAGGCTGAAAAAGTCTGCAAACAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32354</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>62254</contig_pos>
        <strand>+</strand>
        <context>ATCGTGTTTC[A/C]GTAGTTTCGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCAAAAATTCCGCAAGAATCCGAAAAAATTCGTATAAAAATCGTGTTTC</left_flank>
        <right_flank>GTAGTTTCGTCATTGCAGAGATATTCCATATTTTTTTGTAATTTCGAAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGAAAACATATTCAAAATAAAAAATTGGGTACAGTAGGCAGGTTCACCGTAAAACCTGTAATGTAACGTCATGGTATTCTGTTGTTCGGAGGGGTACTTTGGAGGTATGCAAGGTAACGAAATTTGGTTTTGTGCTTGATTATCATGGTAGAAAAACAAGAAAATGGTGCGAATTTTCAGATTGCCCTAAAAGTTAGAGGGACGGTACTATTACAGATAGCGTTATGTTACAGCTTCTACGGTAATCAGAGTCAGATAACTATCCGGCATTTTTTCCGGAAAATTTCTTTGACAAAGAAAAAATAATGCGATGAGTAAGAAATCAGTAAAACTTTAAAAAAAATGCTTACCTGTATAATTTTTTCGCTCCTCCTTGTTATTCAAGCCACTTTTCATTTAAAAAATTTGTTCTAAGTCGCTGGCTTCAATTAAGTTCCAAAAAATTCTGTTCAAAAATTCCGCAAGAATCCGAAAAAATTCGTATAAAAATCGTGTTTCCGTAGTTTCGTCATTGCAGAGATATTCCATATTTTTTTGTAATTTCGAAATTTTCGTGTTCGCTCGACAGTTTTCGTTCTCCTTTAGAATCTTCCGAAACATCAAAAAATATCGTCATTAGTCAAATAATTCCATTTTTAAGTTCGGTTTTCTCTGAAATATTTGTCTGAAATATTAAGATTAATTCTTACCTAATAATCGTTGTAGAAACTATGGCGCCGATGGCTCGTTTTCCTCAAGTCTAATCGTCGCAGTTGATTCCTTTTCCTCCACTCCATTTTGACCGACATTGTTCGGAGCAACGAAGAACTGTTGAATGCAAGCCGTGTATCCTCTGTTAGAAAAATTAGTTCATTTTAGAAATAACAGGGACACACTCACGGCCAATTATTGTTATCCGGTTCACCGACACCCCATTTGATGCCTTCAAATCCTGTTGTATCTCCATCGGTCCATTGGAAAGTGTTATACGGTCCACAGCTAGGAGATCTGCATCCCGGA</canonical>
            <polymorphic>GTGAAAACATATTCAAAATAAAAAATTGGGTACAGTAGGCAGGTTCACCGTAAAACCTGTAATGTAACGTCATGGTATTCTGTTGTTCGGAGGGGTACTTTGGAGGTATGCAAGGTAACGAAATTTGGTTTTGTGCTTGATTATCATGGTAGAAAAACAAGAAAATGGTGCGAATTTTCAGATTGCCCTAAAAGTTAGAGGGACGGTACTATTACAGATAGCGTTATGTTACAGCTTCTACGGTAATCAGAGTCAGATAACTATCCGGCATTTTTTCCGGAAAATTTCTTTGACAAAGAAAAAATAATGCGATGAGTAAGAAATCAGTAAAACTTTAAAAAAAATGCTTACCTGTATAATTTTTTCGCTCCTCCTTGTTATTCAAGCCACTTTTCATTTAAAAAATTTGTTCTAAGTCGCTGGCTTCAATTAAGTTCCAAAAAATTCTGTTCAAAAATTCCGCAAGAATCCGAAAAAATTCGTATAAAAATCGTGTTTCMGTAGTTTCGTCATTGCAGAGATATTCCATATTTTTTTGTAATTTCGAAATTTTCGTGTTCGCTCGACAGTTTTCGTTCTCCTTTAGAATCTTCCGAAACATCAAAAAATATCGTCATTAGTCAAATAATTCCATTTTTAAGTTCGGTTTTCTCTGAAATATTTGTCTGAAATATTAAGATTAATTCTTACCTAATAATCGTTGTAGAAACTATGGCGCCGATGGCTCGTTTTCCTCAAGTCTAATCGTCGCAGTTGATTCCTTTTCCTCCACTCCATTTTGACCGACATTGTTCGGAGCAACGAAGAACTGTTGAATGCAAGCCGTGTATCCTCTGTTAGAAAAATTAGTTCATTTTAGAAATAACAGGGACACACTCACGGCCAATTATTGTTATCCGGTTCACCGACACCCCATTTGATGCCTTCAAATCCTGTTGTATCTCCATCGGTCCATTGGAAAGTGTTATACGGTCCACAGCTAGGAGATCTGCATCCCGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGTCGCTGGCTTCAATTA</pcr_primer_p1>
		<pcr_primer_p2>AATATTTCAGAGAAAACCGAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAGTCGCTGGCTTCAATTAAGTTCCAAAAAATTCTGTTCAAAAATTCCGCAAGAATCCGAAAAAATTCGTATAAAAATCGTGTTTCCGTAGTTTCGTCATTGCAGAGATATTCCATATTTTTTTGTAATTTCGAAATTTTCGTGTTCGCTCGACAGTTTTCGTTCTCCTTTAGAATCTTCCGAAACATCAAAAAATATCGTCATTAGTCAAATAATTCCATTTTTAAGTTCGGTTTTCTCTGAAATATT</canonical_amplicon>
		<polymorphic_amplicon>TAAGTCGCTGGCTTCAATTAAGTTCCAAAAAATTCTGTTCAAAAATTCCGCAAGAATCCGAAAAAATTCGTATAAAAATCGTGTTTCMGTAGTTTCGTCATTGCAGAGATATTCCATATTTTTTTGTAATTTCGAAATTTTCGTGTTCGCTCGACAGTTTTCGTTCTCCTTTAGAATCTTCCGAAACATCAAAAAATATCGTCATTAGTCAAATAATTCCATTTTTAAGTTCGGTTTTCTCTGAAATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32355</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>62348</contig_pos>
        <strand>+</strand>
        <context>TAGAATCTTC[A/C]GAAACATCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCGAAATTTTCGTGTTCGCTCGACAGTTTTCGTTCTCCTTTAGAATCTTC</left_flank>
        <right_flank>GAAACATCAAAAAATATCGTCATTAGTCAAATAATTCCATTTTTAAGTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACTTTGGAGGTATGCAAGGTAACGAAATTTGGTTTTGTGCTTGATTATCATGGTAGAAAAACAAGAAAATGGTGCGAATTTTCAGATTGCCCTAAAAGTTAGAGGGACGGTACTATTACAGATAGCGTTATGTTACAGCTTCTACGGTAATCAGAGTCAGATAACTATCCGGCATTTTTTCCGGAAAATTTCTTTGACAAAGAAAAAATAATGCGATGAGTAAGAAATCAGTAAAACTTTAAAAAAAATGCTTACCTGTATAATTTTTTCGCTCCTCCTTGTTATTCAAGCCACTTTTCATTTAAAAAATTTGTTCTAAGTCGCTGGCTTCAATTAAGTTCCAAAAAATTCTGTTCAAAAATTCCGCAAGAATCCGAAAAAATTCGTATAAAAATCGTGTTTCCGTAGTTTCGTCATTGCAGAGATATTCCATATTTTTTTGTAATTTCGAAATTTTCGTGTTCGCTCGACAGTTTTCGTTCTCCTTTAGAATCTTCCGAAACATCAAAAAATATCGTCATTAGTCAAATAATTCCATTTTTAAGTTCGGTTTTCTCTGAAATATTTGTCTGAAATATTAAGATTAATTCTTACCTAATAATCGTTGTAGAAACTATGGCGCCGATGGCTCGTTTTCCTCAAGTCTAATCGTCGCAGTTGATTCCTTTTCCTCCACTCCATTTTGACCGACATTGTTCGGAGCAACGAAGAACTGTTGAATGCAAGCCGTGTATCCTCTGTTAGAAAAATTAGTTCATTTTAGAAATAACAGGGACACACTCACGGCCAATTATTGTTATCCGGTTCACCGACACCCCATTTGATGCCTTCAAATCCTGTTGTATCTCCATCGGTCCATTGGAAAGTGTTATACGGTCCACAGCTAGGAGATCTGCATCCCGGAAGATTAGTTGCTCCAACCCAGAGTCCTCCTACAGTCTGTCCTAGTACTGTCAGTTTGTTCAGCGCCACTTCTGCAACTTTCATACGCTCGTTTT</canonical>
            <polymorphic>GTACTTTGGAGGTATGCAAGGTAACGAAATTTGGTTTTGTGCTTGATTATCATGGTAGAAAAACAAGAAAATGGTGCGAATTTTCAGATTGCCCTAAAAGTTAGAGGGACGGTACTATTACAGATAGCGTTATGTTACAGCTTCTACGGTAATCAGAGTCAGATAACTATCCGGCATTTTTTCCGGAAAATTTCTTTGACAAAGAAAAAATAATGCGATGAGTAAGAAATCAGTAAAACTTTAAAAAAAATGCTTACCTGTATAATTTTTTCGCTCCTCCTTGTTATTCAAGCCACTTTTCATTTAAAAAATTTGTTCTAAGTCGCTGGCTTCAATTAAGTTCCAAAAAATTCTGTTCAAAAATTCCGCAAGAATCCGAAAAAATTCGTATAAAAATCGTGTTTCCGTAGTTTCGTCATTGCAGAGATATTCCATATTTTTTTGTAATTTCGAAATTTTCGTGTTCGCTCGACAGTTTTCGTTCTCCTTTAGAATCTTCMGAAACATCAAAAAATATCGTCATTAGTCAAATAATTCCATTTTTAAGTTCGGTTTTCTCTGAAATATTTGTCTGAAATATTAAGATTAATTCTTACCTAATAATCGTTGTAGAAACTATGGCGCCGATGGCTCGTTTTCCTCAAGTCTAATCGTCGCAGTTGATTCCTTTTCCTCCACTCCATTTTGACCGACATTGTTCGGAGCAACGAAGAACTGTTGAATGCAAGCCGTGTATCCTCTGTTAGAAAAATTAGTTCATTTTAGAAATAACAGGGACACACTCACGGCCAATTATTGTTATCCGGTTCACCGACACCCCATTTGATGCCTTCAAATCCTGTTGTATCTCCATCGGTCCATTGGAAAGTGTTATACGGTCCACAGCTAGGAGATCTGCATCCCGGAAGATTAGTTGCTCCAACCCAGAGTCCTCCTACAGTCTGTCCTAGTACTGTCAGTTTGTTCAGCGCCACTTCTGCAACTTTCATACGCTCGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGTTTCGTCATTGCAGAGATA</pcr_primer_p1>
		<pcr_primer_p2>GACGATTAGACTTGAGGAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTAGTTTCGTCATTGCAGAGATATTCCATATTTTTTTGTAATTTCGAAATTTTCGTGTTCGCTCGACAGTTTTCGTTCTCCTTTAGAATCTTCCGAAACATCAAAAAATATCGTCATTAGTCAAATAATTCCATTTTTAAGTTCGGTTTTCTCTGAAATATTTGTCTGAAATATTAAGATTAATTCTTACCTAATAATCGTTGTAGAAACTATGGCGCCGATGGCTCGTTTTCCTCAAGTCTAATCGTC</canonical_amplicon>
		<polymorphic_amplicon>GTAGTTTCGTCATTGCAGAGATATTCCATATTTTTTTGTAATTTCGAAATTTTCGTGTTCGCTCGACAGTTTTCGTTCTCCTTTAGAATCTTCMGAAACATCAAAAAATATCGTCATTAGTCAAATAATTCCATTTTTAAGTTCGGTTTTCTCTGAAATATTTGTCTGAAATATTAAGATTAATTCTTACCTAATAATCGTTGTAGAAACTATGGCGCCGATGGCTCGTTTTCCTCAAGTCTAATCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32356</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>62366</contig_pos>
        <strand>+</strand>
        <context>CAAAAAATAT[C/T]GTCATTAGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCGACAGTTTTCGTTCTCCTTTAGAATCTTCCGAAACATCAAAAAATAT</left_flank>
        <right_flank>GTCATTAGTCAAATAATTCCATTTTTAAGTTCGGTTTTCTCTGAAATATT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTAACGAAATTTGGTTTTGTGCTTGATTATCATGGTAGAAAAACAAGAAAATGGTGCGAATTTTCAGATTGCCCTAAAAGTTAGAGGGACGGTACTATTACAGATAGCGTTATGTTACAGCTTCTACGGTAATCAGAGTCAGATAACTATCCGGCATTTTTTCCGGAAAATTTCTTTGACAAAGAAAAAATAATGCGATGAGTAAGAAATCAGTAAAACTTTAAAAAAAATGCTTACCTGTATAATTTTTTCGCTCCTCCTTGTTATTCAAGCCACTTTTCATTTAAAAAATTTGTTCTAAGTCGCTGGCTTCAATTAAGTTCCAAAAAATTCTGTTCAAAAATTCCGCAAGAATCCGAAAAAATTCGTATAAAAATCGTGTTTCCGTAGTTTCGTCATTGCAGAGATATTCCATATTTTTTTGTAATTTCGAAATTTTCGTGTTCGCTCGACAGTTTTCGTTCTCCTTTAGAATCTTCCGAAACATCAAAAAATATCGTCATTAGTCAAATAATTCCATTTTTAAGTTCGGTTTTCTCTGAAATATTTGTCTGAAATATTAAGATTAATTCTTACCTAATAATCGTTGTAGAAACTATGGCGCCGATGGCTCGTTTTCCTCAAGTCTAATCGTCGCAGTTGATTCCTTTTCCTCCACTCCATTTTGACCGACATTGTTCGGAGCAACGAAGAACTGTTGAATGCAAGCCGTGTATCCTCTGTTAGAAAAATTAGTTCATTTTAGAAATAACAGGGACACACTCACGGCCAATTATTGTTATCCGGTTCACCGACACCCCATTTGATGCCTTCAAATCCTGTTGTATCTCCATCGGTCCATTGGAAAGTGTTATACGGTCCACAGCTAGGAGATCTGCATCCCGGAAGATTAGTTGCTCCAACCCAGAGTCCTCCTACAGTCTGTCCTAGTACTGTCAGTTTGTTCAGCGCCACTTCTGCAACTTTCATACGCTCGTTTTCGTTTTGGAATCCAGTGA</canonical>
            <polymorphic>AGGTAACGAAATTTGGTTTTGTGCTTGATTATCATGGTAGAAAAACAAGAAAATGGTGCGAATTTTCAGATTGCCCTAAAAGTTAGAGGGACGGTACTATTACAGATAGCGTTATGTTACAGCTTCTACGGTAATCAGAGTCAGATAACTATCCGGCATTTTTTCCGGAAAATTTCTTTGACAAAGAAAAAATAATGCGATGAGTAAGAAATCAGTAAAACTTTAAAAAAAATGCTTACCTGTATAATTTTTTCGCTCCTCCTTGTTATTCAAGCCACTTTTCATTTAAAAAATTTGTTCTAAGTCGCTGGCTTCAATTAAGTTCCAAAAAATTCTGTTCAAAAATTCCGCAAGAATCCGAAAAAATTCGTATAAAAATCGTGTTTCCGTAGTTTCGTCATTGCAGAGATATTCCATATTTTTTTGTAATTTCGAAATTTTCGTGTTCGCTCGACAGTTTTCGTTCTCCTTTAGAATCTTCCGAAACATCAAAAAATATYGTCATTAGTCAAATAATTCCATTTTTAAGTTCGGTTTTCTCTGAAATATTTGTCTGAAATATTAAGATTAATTCTTACCTAATAATCGTTGTAGAAACTATGGCGCCGATGGCTCGTTTTCCTCAAGTCTAATCGTCGCAGTTGATTCCTTTTCCTCCACTCCATTTTGACCGACATTGTTCGGAGCAACGAAGAACTGTTGAATGCAAGCCGTGTATCCTCTGTTAGAAAAATTAGTTCATTTTAGAAATAACAGGGACACACTCACGGCCAATTATTGTTATCCGGTTCACCGACACCCCATTTGATGCCTTCAAATCCTGTTGTATCTCCATCGGTCCATTGGAAAGTGTTATACGGTCCACAGCTAGGAGATCTGCATCCCGGAAGATTAGTTGCTCCAACCCAGAGTCCTCCTACAGTCTGTCCTAGTACTGTCAGTTTGTTCAGCGCCACTTCTGCAACTTTCATACGCTCGTTTTCGTTTTGGAATCCAGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGTTTCGTCATTGCAGAGATA</pcr_primer_p1>
		<pcr_primer_p2>GACGATTAGACTTGAGGAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTAGTTTCGTCATTGCAGAGATATTCCATATTTTTTTGTAATTTCGAAATTTTCGTGTTCGCTCGACAGTTTTCGTTCTCCTTTAGAATCTTCCGAAACATCAAAAAATATCGTCATTAGTCAAATAATTCCATTTTTAAGTTCGGTTTTCTCTGAAATATTTGTCTGAAATATTAAGATTAATTCTTACCTAATAATCGTTGTAGAAACTATGGCGCCGATGGCTCGTTTTCCTCAAGTCTAATCGTC</canonical_amplicon>
		<polymorphic_amplicon>GTAGTTTCGTCATTGCAGAGATATTCCATATTTTTTTGTAATTTCGAAATTTTCGTGTTCGCTCGACAGTTTTCGTTCTCCTTTAGAATCTTCCGAAACATCAAAAAATATYGTCATTAGTCAAATAATTCCATTTTTAAGTTCGGTTTTCTCTGAAATATTTGTCTGAAATATTAAGATTAATTCTTACCTAATAATCGTTGTAGAAACTATGGCGCCGATGGCTCGTTTTCCTCAAGTCTAATCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32357</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>62440</contig_pos>
        <strand>+</strand>
        <context>AAGATTAATT[C/T]TTACCTAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTAAGTTCGGTTTTCTCTGAAATATTTGTCTGAAATATTAAGATTAATT</left_flank>
        <right_flank>TTACCTAATAATCGTTGTAGAAACTATGGCGCCGATGGCTCGTTTTCCTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTAAAAGTTAGAGGGACGGTACTATTACAGATAGCGTTATGTTACAGCTTCTACGGTAATCAGAGTCAGATAACTATCCGGCATTTTTTCCGGAAAATTTCTTTGACAAAGAAAAAATAATGCGATGAGTAAGAAATCAGTAAAACTTTAAAAAAAATGCTTACCTGTATAATTTTTTCGCTCCTCCTTGTTATTCAAGCCACTTTTCATTTAAAAAATTTGTTCTAAGTCGCTGGCTTCAATTAAGTTCCAAAAAATTCTGTTCAAAAATTCCGCAAGAATCCGAAAAAATTCGTATAAAAATCGTGTTTCCGTAGTTTCGTCATTGCAGAGATATTCCATATTTTTTTGTAATTTCGAAATTTTCGTGTTCGCTCGACAGTTTTCGTTCTCCTTTAGAATCTTCCGAAACATCAAAAAATATCGTCATTAGTCAAATAATTCCATTTTTAAGTTCGGTTTTCTCTGAAATATTTGTCTGAAATATTAAGATTAATTCTTACCTAATAATCGTTGTAGAAACTATGGCGCCGATGGCTCGTTTTCCTCAAGTCTAATCGTCGCAGTTGATTCCTTTTCCTCCACTCCATTTTGACCGACATTGTTCGGAGCAACGAAGAACTGTTGAATGCAAGCCGTGTATCCTCTGTTAGAAAAATTAGTTCATTTTAGAAATAACAGGGACACACTCACGGCCAATTATTGTTATCCGGTTCACCGACACCCCATTTGATGCCTTCAAATCCTGTTGTATCTCCATCGGTCCATTGGAAAGTGTTATACGGTCCACAGCTAGGAGATCTGCATCCCGGAAGATTAGTTGCTCCAACCCAGAGTCCTCCTACAGTCTGTCCTAGTACTGTCAGTTTGTTCAGCGCCACTTCTGCAACTTTCATACGCTCGTTTTCGTTTTGGAATCCAGTGAGAACTGCTCCCATGCCAGTGCAAGTATTTTGAGAGAACCATCCATTGGTTACTCCCGAAAAACCATCCTTGAAA</canonical>
            <polymorphic>CCTAAAAGTTAGAGGGACGGTACTATTACAGATAGCGTTATGTTACAGCTTCTACGGTAATCAGAGTCAGATAACTATCCGGCATTTTTTCCGGAAAATTTCTTTGACAAAGAAAAAATAATGCGATGAGTAAGAAATCAGTAAAACTTTAAAAAAAATGCTTACCTGTATAATTTTTTCGCTCCTCCTTGTTATTCAAGCCACTTTTCATTTAAAAAATTTGTTCTAAGTCGCTGGCTTCAATTAAGTTCCAAAAAATTCTGTTCAAAAATTCCGCAAGAATCCGAAAAAATTCGTATAAAAATCGTGTTTCCGTAGTTTCGTCATTGCAGAGATATTCCATATTTTTTTGTAATTTCGAAATTTTCGTGTTCGCTCGACAGTTTTCGTTCTCCTTTAGAATCTTCCGAAACATCAAAAAATATCGTCATTAGTCAAATAATTCCATTTTTAAGTTCGGTTTTCTCTGAAATATTTGTCTGAAATATTAAGATTAATTYTTACCTAATAATCGTTGTAGAAACTATGGCGCCGATGGCTCGTTTTCCTCAAGTCTAATCGTCGCAGTTGATTCCTTTTCCTCCACTCCATTTTGACCGACATTGTTCGGAGCAACGAAGAACTGTTGAATGCAAGCCGTGTATCCTCTGTTAGAAAAATTAGTTCATTTTAGAAATAACAGGGACACACTCACGGCCAATTATTGTTATCCGGTTCACCGACACCCCATTTGATGCCTTCAAATCCTGTTGTATCTCCATCGGTCCATTGGAAAGTGTTATACGGTCCACAGCTAGGAGATCTGCATCCCGGAAGATTAGTTGCTCCAACCCAGAGTCCTCCTACAGTCTGTCCTAGTACTGTCAGTTTGTTCAGCGCCACTTCTGCAACTTTCATACGCTCGTTTTCGTTTTGGAATCCAGTGAGAACTGCTCCCATGCCAGTGCAAGTATTTTGAGAGAACCATCCATTGGTTACTCCCGAAAAACCATCCTTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTTTAAGTTCGGTTTTCTCT</pcr_primer_p1>
		<pcr_primer_p2>GAGTGTGTCCCTGTTATTTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CATTTTTAAGTTCGGTTTTCTCTGAAATATTTGTCTGAAATATTAAGATTAATTCTTACCTAATAATCGTTGTAGAAACTATGGCGCCGATGGCTCGTTTTCCTCAAGTCTAATCGTCGCAGTTGATTCCTTTTCCTCCACTCCATTTTGACCGACATTGTTCGGAGCAACGAAGAACTGTTGAATGCAAGCCGTGTATCCTCTGTTAGAAAAATTAGTTCATTTTAGAAATAACAGGGACACACTC</canonical_amplicon>
		<polymorphic_amplicon>CATTTTTAAGTTCGGTTTTCTCTGAAATATTTGTCTGAAATATTAAGATTAATTYTTACCTAATAATCGTTGTAGAAACTATGGCGCCGATGGCTCGTTTTCCTCAAGTCTAATCGTCGCAGTTGATTCCTTTTCCTCCACTCCATTTTGACCGACATTGTTCGGAGCAACGAAGAACTGTTGAATGCAAGCCGTGTATCCTCTGTTAGAAAAATTAGTTCATTTTAGAAATAACAGGGACACACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32358</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>62471</contig_pos>
        <strand>+</strand>
        <context>AAACTATGGC[A/G]CCGATGGCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAATATTAAGATTAATTCTTACCTAATAATCGTTGTAGAAACTATGGC</left_flank>
        <right_flank>CCGATGGCTCGTTTTCCTCAAGTCTAATCGTCGCAGTTGATTCCTTTTCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGCGTTATGTTACAGCTTCTACGGTAATCAGAGTCAGATAACTATCCGGCATTTTTTCCGGAAAATTTCTTTGACAAAGAAAAAATAATGCGATGAGTAAGAAATCAGTAAAACTTTAAAAAAAATGCTTACCTGTATAATTTTTTCGCTCCTCCTTGTTATTCAAGCCACTTTTCATTTAAAAAATTTGTTCTAAGTCGCTGGCTTCAATTAAGTTCCAAAAAATTCTGTTCAAAAATTCCGCAAGAATCCGAAAAAATTCGTATAAAAATCGTGTTTCCGTAGTTTCGTCATTGCAGAGATATTCCATATTTTTTTGTAATTTCGAAATTTTCGTGTTCGCTCGACAGTTTTCGTTCTCCTTTAGAATCTTCCGAAACATCAAAAAATATCGTCATTAGTCAAATAATTCCATTTTTAAGTTCGGTTTTCTCTGAAATATTTGTCTGAAATATTAAGATTAATTCTTACCTAATAATCGTTGTAGAAACTATGGCGCCGATGGCTCGTTTTCCTCAAGTCTAATCGTCGCAGTTGATTCCTTTTCCTCCACTCCATTTTGACCGACATTGTTCGGAGCAACGAAGAACTGTTGAATGCAAGCCGTGTATCCTCTGTTAGAAAAATTAGTTCATTTTAGAAATAACAGGGACACACTCACGGCCAATTATTGTTATCCGGTTCACCGACACCCCATTTGATGCCTTCAAATCCTGTTGTATCTCCATCGGTCCATTGGAAAGTGTTATACGGTCCACAGCTAGGAGATCTGCATCCCGGAAGATTAGTTGCTCCAACCCAGAGTCCTCCTACAGTCTGTCCTAGTACTGTCAGTTTGTTCAGCGCCACTTCTGCAACTTTCATACGCTCGTTTTCGTTTTGGAATCCAGTGAGAACTGCTCCCATGCCAGTGCAAGTATTTTGAGAGAACCATCCATTGGTTACTCCCGAAAAACCATCCTTGAAAATTAGAAAATTGAACGTCTGCTAGAGTTTGA</canonical>
            <polymorphic>ATAGCGTTATGTTACAGCTTCTACGGTAATCAGAGTCAGATAACTATCCGGCATTTTTTCCGGAAAATTTCTTTGACAAAGAAAAAATAATGCGATGAGTAAGAAATCAGTAAAACTTTAAAAAAAATGCTTACCTGTATAATTTTTTCGCTCCTCCTTGTTATTCAAGCCACTTTTCATTTAAAAAATTTGTTCTAAGTCGCTGGCTTCAATTAAGTTCCAAAAAATTCTGTTCAAAAATTCCGCAAGAATCCGAAAAAATTCGTATAAAAATCGTGTTTCCGTAGTTTCGTCATTGCAGAGATATTCCATATTTTTTTGTAATTTCGAAATTTTCGTGTTCGCTCGACAGTTTTCGTTCTCCTTTAGAATCTTCCGAAACATCAAAAAATATCGTCATTAGTCAAATAATTCCATTTTTAAGTTCGGTTTTCTCTGAAATATTTGTCTGAAATATTAAGATTAATTCTTACCTAATAATCGTTGTAGAAACTATGGCRCCGATGGCTCGTTTTCCTCAAGTCTAATCGTCGCAGTTGATTCCTTTTCCTCCACTCCATTTTGACCGACATTGTTCGGAGCAACGAAGAACTGTTGAATGCAAGCCGTGTATCCTCTGTTAGAAAAATTAGTTCATTTTAGAAATAACAGGGACACACTCACGGCCAATTATTGTTATCCGGTTCACCGACACCCCATTTGATGCCTTCAAATCCTGTTGTATCTCCATCGGTCCATTGGAAAGTGTTATACGGTCCACAGCTAGGAGATCTGCATCCCGGAAGATTAGTTGCTCCAACCCAGAGTCCTCCTACAGTCTGTCCTAGTACTGTCAGTTTGTTCAGCGCCACTTCTGCAACTTTCATACGCTCGTTTTCGTTTTGGAATCCAGTGAGAACTGCTCCCATGCCAGTGCAAGTATTTTGAGAGAACCATCCATTGGTTACTCCCGAAAAACCATCCTTGAAAATTAGAAAATTGAACGTCTGCTAGAGTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 347 153</canonical_bands>
                <polymorphic_bands>847 153</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCGCC</site>
                <isoschizomers>
                    <enzyme>BbeI</enzyme>
                    <enzyme>EgeI</enzyme>
                    <enzyme>EheI</enzyme>
                    <enzyme>KasI</enzyme>
                    <enzyme>Mly113I</enzyme>
                    <enzyme>NarI</enzyme>
                    <enzyme>SfoI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>501 347 152</canonical_bands>
                <polymorphic_bands>848 152</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTTTTAAGTTCGGTTTTCTCT</pcr_primer_p1>
		<pcr_primer_p2>GAGTGTGTCCCTGTTATTTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CATTTTTAAGTTCGGTTTTCTCTGAAATATTTGTCTGAAATATTAAGATTAATTCTTACCTAATAATCGTTGTAGAAACTATGGCGCCGATGGCTCGTTTTCCTCAAGTCTAATCGTCGCAGTTGATTCCTTTTCCTCCACTCCATTTTGACCGACATTGTTCGGAGCAACGAAGAACTGTTGAATGCAAGCCGTGTATCCTCTGTTAGAAAAATTAGTTCATTTTAGAAATAACAGGGACACACTC</canonical_amplicon>
		<polymorphic_amplicon>CATTTTTAAGTTCGGTTTTCTCTGAAATATTTGTCTGAAATATTAAGATTAATTCTTACCTAATAATCGTTGTAGAAACTATGGCRCCGATGGCTCGTTTTCCTCAAGTCTAATCGTCGCAGTTGATTCCTTTTCCTCCACTCCATTTTGACCGACATTGTTCGGAGCAACGAAGAACTGTTGAATGCAAGCCGTGTATCCTCTGTTAGAAAAATTAGTTCATTTTAGAAATAACAGGGACACACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32359</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115329</contig_pos>
        <strand>+</strand>
        <context>GTGAAATTTC[A/G]TTGCAAGCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTC</left_flank>
        <right_flank>TTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAAACTGTGATCATAGAATACGGAGGAACCAATACTGGATGTCAAGTGTCAAGTCGGCCAGAGAATCATAATTGACGGATCACATTTTTTGAATATTTTTGCTGAAAATGATTTGAAAATTGTTCTGACATATCAAAAATCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGT</canonical>
            <polymorphic>AGAAAACTGTGATCATAGAATACGGAGGAACCAATACTGGATGTCAAGTGTCAAGTCGGCCAGAGAATCATAATTGACGGATCACATTTTTTGAATATTTTTGCTGAAAATGATTTGAAAATTGTTCTGACATATCAAAAATCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCRTTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTAATTTTGCACCGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTATCACAAATATCGGGAATAGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCRTTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32360</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115354</contig_pos>
        <strand>+</strand>
        <context>TTGAAAAATG[A/G]CTTCAGCRCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATG</left_flank>
        <right_flank>CTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGAACCAATACTGGATGTCAAGTGTCAAGTCGGCCAGAGAATCATAATTGACGGATCACATTTTTTGAATATTTTTGCTGAAAATGATTTGAAAATTGTTCTGACATATCAAAAATCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACC</canonical>
            <polymorphic>AGGAACCAATACTGGATGTCAAGTGTCAAGTCGGCCAGAGAATCATAATTGACGGATCACATTTTTTGAATATTTTTGCTGAAAATGATTTGAAAATTGTTCTGACATATCAAAAATCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGRCTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTAATTTTGCACCGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTATCACAAATATCGGGAATAGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGRCTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32361</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115362</contig_pos>
        <strand>+</strand>
        <context>TGRCTTCAGC[A/G]CTACATGTKC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGC</left_flank>
        <right_flank>CTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATACTGGATGTCAAGTGTCAAGTCGGCCAGAGAATCATAATTGACGGATCACATTTTTTGAATATTTTTGCTGAAAATGATTTGAAAATTGTTCTGACATATCAAAAATCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAA</canonical>
            <polymorphic>ATACTGGATGTCAAGTGTCAAGTCGGCCAGAGAATCATAATTGACGGATCACATTTTTTGAATATTTTTGCTGAAAATGATTTGAAAATTGTTCTGACATATCAAAAATCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCRCTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>125 121 95 86 83 76 75 62 60 45 41 34 27 17 16 15 9 6 5 2</canonical_bands>
                <polymorphic_bands>125 121 95 86 83 76 75 62 60 50 45 34 27 17 16 15 6 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTAATTTTGCACCGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTATCACAAATATCGGGAATAGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCRCTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32362</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115371</contig_pos>
        <strand>+</strand>
        <context>CRCTACATGT[G/T]CTKMTTACTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGT</left_flank>
        <right_flank>CTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCAAGTGTCAAGTCGGCCAGAGAATCATAATTGACGGATCACATTTTTTGAATATTTTTGCTGAAAATGATTTGAAAATTGTTCTGACATATCAAAAATCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGG</canonical>
            <polymorphic>GTCAAGTGTCAAGTCGGCCAGAGAATCATAATTGACGGATCACATTTTTTGAATATTTTTGCTGAAAATGATTTGAAAATTGTTCTGACATATCAAAAATCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTKCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>125 121 95 86 83 76 75 62 60 49 41 34 27 16 15 9 8 6 5 5 2</canonical_bands>
                <polymorphic_bands>125 121 95 86 84 83 76 62 60 49 41 34 27 16 15 8 6 5 5 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTAATTTTGCACCGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTATCACAAATATCGGGAATAGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTKCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32363</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115374</contig_pos>
        <strand>+</strand>
        <context>TACATGTKCT[G/T]MTTACTGTAK</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCT</left_flank>
        <right_flank>CTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTGTCAAGTCGGCCAGAGAATCATAATTGACGGATCACATTTTTTGAATATTTTTGCTGAAAATGATTTGAAAATTGTTCTGACATATCAAAAATCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACA</canonical>
            <polymorphic>AAGTGTCAAGTCGGCCAGAGAATCATAATTGACGGATCACATTTTTTGAATATTTTTGCTGAAAATGATTTGAAAATTGTTCTGACATATCAAAAATCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTKCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTAATTTTGCACCGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTATCACAAATATCGGGAATAGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTKCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32364</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115375</contig_pos>
        <strand>+</strand>
        <context>ACATGTKCTK[A/C]TTACTGTAKT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTG</left_flank>
        <right_flank>TTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTGTCAAGTCGGCCAGAGAATCATAATTGACGGATCACATTTTTTGAATATTTTTGCTGAAAATGATTTGAAAATTGTTCTGACATATCAAAAATCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACAT</canonical>
            <polymorphic>AGTGTCAAGTCGGCCAGAGAATCATAATTGACGGATCACATTTTTTGAATATTTTTGCTGAAAATGATTTGAAAATTGTTCTGACATATCAAAAATCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGMTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTAATTTTGCACCGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTATCACAAATATCGGGAATAGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGMTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32365</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115384</contig_pos>
        <strand>+</strand>
        <context>KMTTACTGTA[G/T]TTCTKTTTYT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTA</left_flank>
        <right_flank>TTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGGCCAGAGAATCATAATTGACGGATCACATTTTTTGAATATTTTTGCTGAAAATGATTTGAAAATTGTTCTGACATATCAAAAATCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAAT</canonical>
            <polymorphic>TCGGCCAGAGAATCATAATTGACGGATCACATTTTTTGAATATTTTTGCTGAAAATGATTTGAAAATTGTTCTGACATATCAAAAATCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAKTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTAATTTTGCACCGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTATCACAAATATCGGGAATAGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAKTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32366</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115389</contig_pos>
        <strand>+</strand>
        <context>CTGTAKTTCT[G/T]TTTYTYYTRA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCT</left_flank>
        <right_flank>TTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAGAATCATAATTGACGGATCACATTTTTTGAATATTTTTGCTGAAAATGATTTGAAAATTGTTCTGACATATCAAAAATCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGT</canonical>
            <polymorphic>CAGAGAATCATAATTGACGGATCACATTTTTTGAATATTTTTGCTGAAAATGATTTGAAAATTGTTCTGACATATCAAAAATCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTKTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTAATTTTGCACCGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTATCACAAATATCGGGAATAGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTKTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32367</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115393</contig_pos>
        <strand>+</strand>
        <context>AKTTCTKTTT[C/T]TYYTRATAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTT</left_flank>
        <right_flank>TCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATCATAATTGACGGATCACATTTTTTGAATATTTTTGCTGAAAATGATTTGAAAATTGTTCTGACATATCAAAAATCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTC</canonical>
            <polymorphic>GAATCATAATTGACGGATCACATTTTTTGAATATTTTTGCTGAAAATGATTTGAAAATTGTTCTGACATATCAAAAATCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTYTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTAATTTTGCACCGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTATCACAAATATCGGGAATAGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTYTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32368</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115395</contig_pos>
        <strand>+</strand>
        <context>TTCTKTTTYT[C/T]YTRATAGTKT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTT</left_flank>
        <right_flank>CTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCATAATTGACGGATCACATTTTTTGAATATTTTTGCTGAAAATGATTTGAAAATTGTTCTGACATATCAAAAATCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGA</canonical>
            <polymorphic>ATCATAATTGACGGATCACATTTTTTGAATATTTTTGCTGAAAATGATTTGAAAATTGTTCTGACATATCAAAAATCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTYCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTAATTTTGCACCGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTATCACAAATATCGGGAATAGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTYCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32369</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115396</contig_pos>
        <strand>+</strand>
        <context>TCTKTTTYTY[C/T]TRATAGTKTY</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTC</left_flank>
        <right_flank>TAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATAATTGACGGATCACATTTTTTGAATATTTTTGCTGAAAATGATTTGAAAATTGTTCTGACATATCAAAAATCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAA</canonical>
            <polymorphic>TCATAATTGACGGATCACATTTTTTGAATATTTTTGCTGAAAATGATTTGAAAATTGTTCTGACATATCAAAAATCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCYTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTAATTTTGCACCGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTATCACAAATATCGGGAATAGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCYTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32370</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115398</contig_pos>
        <strand>+</strand>
        <context>TKTTTYTYYT[A/G]ATAGTKTYCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCT</left_flank>
        <right_flank>ATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAATTGACGGATCACATTTTTTGAATATTTTTGCTGAAAATGATTTGAAAATTGTTCTGACATATCAAAAATCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAAT</canonical>
            <polymorphic>ATAATTGACGGATCACATTTTTTGAATATTTTTGCTGAAAATGATTTGAAAATTGTTCTGACATATCAAAAATCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTRATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAATCTCTAATCTCCGACATTTAT</pcr_primer_p1>
		<pcr_primer_p2>CATTGAAATATGACACCAAAACT</pcr_primer_p2>
		<pcr_amplicon_size>333</pcr_amplicon_size>
		<canonical_amplicon>TTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATG</canonical_amplicon>
		<polymorphic_amplicon>TTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTRATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32371</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115404</contig_pos>
        <strand>+</strand>
        <context>TYYTRATAGT[G/T]TYCATGGCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGT</left_flank>
        <right_flank>TTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGGATCACATTTTTTGAATATTTTTGCTGAAAATGATTTGAAAATTGTTCTGACATATCAAAAATCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTT</canonical>
            <polymorphic>GACGGATCACATTTTTTGAATATTTTTGCTGAAAATGATTTGAAAATTGTTCTGACATATCAAAAATCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTKTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAATCTCTAATCTCCGACATTTAT</pcr_primer_p1>
		<pcr_primer_p2>CATTGAAATATGACACCAAAACT</pcr_primer_p2>
		<pcr_amplicon_size>333</pcr_amplicon_size>
		<canonical_amplicon>TTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATG</canonical_amplicon>
		<polymorphic_amplicon>TTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTKTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32372</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115406</contig_pos>
        <strand>+</strand>
        <context>YTRATAGTKT[C/T]CATGGCAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTT</left_flank>
        <right_flank>CATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGATCACATTTTTTGAATATTTTTGCTGAAAATGATTTGAAAATTGTTCTGACATATCAAAAATCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTA</canonical>
            <polymorphic>CGGATCACATTTTTTGAATATTTTTGCTGAAAATGATTTGAAAATTGTTCTGACATATCAAAAATCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTYCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAATCTCTAATCTCCGACATTTAT</pcr_primer_p1>
		<pcr_primer_p2>CATTGAAATATGACACCAAAACT</pcr_primer_p2>
		<pcr_amplicon_size>333</pcr_amplicon_size>
		<canonical_amplicon>TTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATG</canonical_amplicon>
		<polymorphic_amplicon>TTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTYCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32373</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115458</contig_pos>
        <strand>+</strand>
        <context>TAATATCTAG[A/G]AARAACCGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAG</left_flank>
        <right_flank>AAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATATCAAAAATCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCG</canonical>
            <polymorphic>ACATATCAAAAATCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGRAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>437 354 122 67 20</canonical_bands>
                <polymorphic_bands>457 354 122 67</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>505 374 121</canonical_bands>
                <polymorphic_bands>879 121</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGGCAATTCTTCTCTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>ACATTGAAATATGACACCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>191</pcr_amplicon_size>
		<canonical_amplicon>ATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGT</canonical_amplicon>
		<polymorphic_amplicon>ATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGRAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32374</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115461</contig_pos>
        <strand>+</strand>
        <context>TATCTAGRAA[A/G]AACCGAAARA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAA</left_flank>
        <right_flank>AACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCAAAAATCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCG</canonical>
            <polymorphic>TATCAAAAATCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAARAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCAATTCTTCTCTTCTTTCTA</pcr_primer_p1>
		<pcr_primer_p2>ACATTGAAATATGACACCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>189</pcr_amplicon_size>
		<canonical_amplicon>GGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGT</canonical_amplicon>
		<polymorphic_amplicon>GGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAARAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32375</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115470</contig_pos>
        <strand>+</strand>
        <context>ARAACCGAAA[A/G]AAAGACCAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAA</left_flank>
        <right_flank>AAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACT</canonical>
            <polymorphic>TCACTATTGGACTATCTCAAGGTTCATGTGGACCACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAARAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCAATTCTTCTCTTCTTTCTAT</pcr_primer_p1>
		<pcr_primer_p2>ACATTGAAATATGACACCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>189</pcr_amplicon_size>
		<canonical_amplicon>GGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGT</canonical_amplicon>
		<polymorphic_amplicon>GGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAARAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32376</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115503</contig_pos>
        <strand>+</strand>
        <context>ACCCGATAAT[G/T]AATCACTGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAAT</left_flank>
        <right_flank>AATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGG</canonical>
            <polymorphic>CACAAGGGGCAACAGAATAGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATKAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>356 237 145 110 77 31 28 16</canonical_bands>
                <polymorphic_bands>593 145 110 77 31 28 16</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>143 108 106 105 102 90 87 45 42 38 38 31 31 18 11 5</canonical_bands>
                <polymorphic_bands>143 132 108 106 105 102 90 42 38 38 31 31 18 11 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCAATTCTTCTCTTCTTTCTAT</pcr_primer_p1>
		<pcr_primer_p2>ACATTGAAATATGACACCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>189</pcr_amplicon_size>
		<canonical_amplicon>GGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGT</canonical_amplicon>
		<polymorphic_amplicon>GGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATKAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32377</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115521</contig_pos>
        <strand>+</strand>
        <context>GTTTCAAAGT[A/G]ARCGTTATCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGT</left_flank>
        <right_flank>AGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCG</canonical>
            <polymorphic>AGACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTRAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCAATTCTTCTCTTCTTTCTAT</pcr_primer_p1>
		<pcr_primer_p2>ACATTGAAATATGACACCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>189</pcr_amplicon_size>
		<canonical_amplicon>GGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGT</canonical_amplicon>
		<polymorphic_amplicon>GGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTRAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32378</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115523</contig_pos>
        <strand>+</strand>
        <context>TTCAAAGTRA[A/G]CGTTATCTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAA</left_flank>
        <right_flank>CGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAG</canonical>
            <polymorphic>ACGAATGGATAAGATGTTTTCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAARCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCAATTCTTCTCTTCTTTCTAT</pcr_primer_p1>
		<pcr_primer_p2>ACATTGAAATATGACACCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>189</pcr_amplicon_size>
		<canonical_amplicon>GGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGT</canonical_amplicon>
		<polymorphic_amplicon>GGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAARCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32379</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115542</contig_pos>
        <strand>+</strand>
        <context>TTTATGTTTT[A/C]TCAMTTTTYT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTT</left_flank>
        <right_flank>TCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGA</canonical>
            <polymorphic>TCTCATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTMTCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCAATTCTTCTCTTCTTTCTAT</pcr_primer_p1>
		<pcr_primer_p2>ACATTGAAATATGACACCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>189</pcr_amplicon_size>
		<canonical_amplicon>GGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGT</canonical_amplicon>
		<polymorphic_amplicon>GGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTMTCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32380</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115546</contig_pos>
        <strand>+</strand>
        <context>TGTTTTMTCA[A/C]TTTTYTTGKT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCA</left_flank>
        <right_flank>TTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGA</canonical>
            <polymorphic>ATTTCATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAMTTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>151 143 106 102 90 87 62 45 42 38 38 31 31 18 11 5</canonical_bands>
                <polymorphic_bands>188 151 106 102 90 87 62 42 38 38 31 31 18 11 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTATTCCCGATATTTGTGATAA</pcr_primer_p1>
		<pcr_primer_p2>CGGAATTTCGAGAACATTATT</pcr_primer_p2>
		<pcr_amplicon_size>475</pcr_amplicon_size>
		<canonical_amplicon>TCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCG</canonical_amplicon>
		<polymorphic_amplicon>TCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAMTTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32381</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115551</contig_pos>
        <strand>+</strand>
        <context>TMTCAMTTTT[C/T]TTGKTTYTKT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTT</left_flank>
        <right_flank>TTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTA</canonical>
            <polymorphic>ATTCCATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTYTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATTCCCGATATTTGTGATAA</pcr_primer_p1>
		<pcr_primer_p2>CGGAATTTCGAGAACATTATT</pcr_primer_p2>
		<pcr_amplicon_size>475</pcr_amplicon_size>
		<canonical_amplicon>TCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCG</canonical_amplicon>
		<polymorphic_amplicon>TCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTYTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32382</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115555</contig_pos>
        <strand>+</strand>
        <context>AMTTTTYTTG[G/T]TTYTKTATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTG</left_flank>
        <right_flank>TTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCG</canonical>
            <polymorphic>CATTTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGKTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATTCCCGATATTTGTGATAA</pcr_primer_p1>
		<pcr_primer_p2>CGGAATTTCGAGAACATTATT</pcr_primer_p2>
		<pcr_amplicon_size>475</pcr_amplicon_size>
		<canonical_amplicon>TCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCG</canonical_amplicon>
		<polymorphic_amplicon>TCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGKTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32383</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115558</contig_pos>
        <strand>+</strand>
        <context>TTTYTTGKTT[C/T]TKTATTTGRT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTT</left_flank>
        <right_flank>TTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTG</canonical>
            <polymorphic>TTTTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTYTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATTCCCGATATTTGTGATAA</pcr_primer_p1>
		<pcr_primer_p2>CGGAATTTCGAGAACATTATT</pcr_primer_p2>
		<pcr_amplicon_size>475</pcr_amplicon_size>
		<canonical_amplicon>TCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCG</canonical_amplicon>
		<polymorphic_amplicon>TCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTYTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32384</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115560</contig_pos>
        <strand>+</strand>
        <context>TYTTGKTTYT[G/T]TATTTGRTWK</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCT</left_flank>
        <right_flank>TATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTA</canonical>
            <polymorphic>TTTGTTGATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTKTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATTCCCGATATTTGTGATAA</pcr_primer_p1>
		<pcr_primer_p2>CGGAATTTCGAGAACATTATT</pcr_primer_p2>
		<pcr_amplicon_size>475</pcr_amplicon_size>
		<canonical_amplicon>TCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCG</canonical_amplicon>
		<polymorphic_amplicon>TCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTKTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32385</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115567</contig_pos>
        <strand>+</strand>
        <context>TYTKTATTTG[A/G]TWKYMATAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTG</left_flank>
        <right_flank>TAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTG</canonical>
            <polymorphic>ATCTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGRTAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATTCCCGATATTTGTGATAA</pcr_primer_p1>
		<pcr_primer_p2>CGGAATTTCGAGAACATTATT</pcr_primer_p2>
		<pcr_amplicon_size>475</pcr_amplicon_size>
		<canonical_amplicon>TCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCG</canonical_amplicon>
		<polymorphic_amplicon>TCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGRTAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32386</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115569</contig_pos>
        <strand>+</strand>
        <context>TKTATTTGRT[A/T]KYMATAGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGAT</left_flank>
        <right_flank>GCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGAC</canonical>
            <polymorphic>CTACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATWGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATTCCCGATATTTGTGATAA</pcr_primer_p1>
		<pcr_primer_p2>CGGAATTTCGAGAACATTATT</pcr_primer_p2>
		<pcr_amplicon_size>475</pcr_amplicon_size>
		<canonical_amplicon>TCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCG</canonical_amplicon>
		<polymorphic_amplicon>TCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATWGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32387</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115570</contig_pos>
        <strand>+</strand>
        <context>KTATTTGRTW[G/T]YMATAGTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATA</left_flank>
        <right_flank>CAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACG</canonical>
            <polymorphic>TACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAKCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATTCCCGATATTTGTGATAA</pcr_primer_p1>
		<pcr_primer_p2>CGGAATTTCGAGAACATTATT</pcr_primer_p2>
		<pcr_amplicon_size>475</pcr_amplicon_size>
		<canonical_amplicon>TCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCG</canonical_amplicon>
		<polymorphic_amplicon>TCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAKCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32388</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115571</contig_pos>
        <strand>+</strand>
        <context>TATTTGRTWK[C/T]MATAGTTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAG</left_flank>
        <right_flank>AATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGG</canonical>
            <polymorphic>ACTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGYAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATTCCCGATATTTGTGATAA</pcr_primer_p1>
		<pcr_primer_p2>CGGAATTTCGAGAACATTATT</pcr_primer_p2>
		<pcr_amplicon_size>475</pcr_amplicon_size>
		<canonical_amplicon>TCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCG</canonical_amplicon>
		<polymorphic_amplicon>TCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGYAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32389</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115572</contig_pos>
        <strand>+</strand>
        <context>ATTTGRTWKY[A/C]ATAGTTTTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGC</left_flank>
        <right_flank>ATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGT</canonical>
            <polymorphic>CTGAAATCTAGAAGACGTGCTCTAACGACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCMATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATTCCCGATATTTGTGATAA</pcr_primer_p1>
		<pcr_primer_p2>CGGAATTTCGAGAACATTATT</pcr_primer_p2>
		<pcr_amplicon_size>475</pcr_amplicon_size>
		<canonical_amplicon>TCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCG</canonical_amplicon>
		<polymorphic_amplicon>TCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCMATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32390</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115599</contig_pos>
        <strand>+</strand>
        <context>ATTTCAATGT[G/T]TYATCGGAAR</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGT</left_flank>
        <right_flank>TTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAA</canonical>
            <polymorphic>ACAACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTKTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>121 117 95 83 76 75 68 67 62 49 41 32 25 19 17 16 15 9 6 5 2</canonical_bands>
                <polymorphic_bands>121 117 110 83 76 75 68 67 62 49 41 32 25 19 17 16 9 6 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTATTCCCGATATTTGTGATAA</pcr_primer_p1>
		<pcr_primer_p2>CGGAATTTCGAGAACATTATT</pcr_primer_p2>
		<pcr_amplicon_size>475</pcr_amplicon_size>
		<canonical_amplicon>TCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCG</canonical_amplicon>
		<polymorphic_amplicon>TCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTKTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32391</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115601</contig_pos>
        <strand>+</strand>
        <context>TTCAATGTKT[C/T]ATCGGAARGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGT</left_flank>
        <right_flank>ATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACT</canonical>
            <polymorphic>AACTACTAATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTYATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATTCCCGATATTTGTGATAA</pcr_primer_p1>
		<pcr_primer_p2>CGGAATTTCGAGAACATTATT</pcr_primer_p2>
		<pcr_amplicon_size>475</pcr_amplicon_size>
		<canonical_amplicon>TCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCG</canonical_amplicon>
		<polymorphic_amplicon>TCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTYATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32392</snp_id>
        <super_contig>c007500849.Contig2</super_contig>
        <contig_pos>115609</contig_pos>
        <strand>+</strand>
        <context>KTYATCGGAA[A/G]GGTAAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAA</left_flank>
        <right_flank>GGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAA</canonical>
            <polymorphic>ATTTTAAATGGAATCCAAATTCATAAGTTTATACTGTTTAGAATATTTTTTTTTCAATTTTTTCGTTTAGGAATAAACTATTAAACCTTGATCAATTTAATTTTGCACCGAAAACATTTTTCACTTTTTAAGAGATCGAAAATTGCTTTCAAATTTTAATCTCTAATCTCCGACATTTATAAAATTTGTATACAAAGTTTCTATCACAGGTGAAATTTCATTGCAAGCGACTTTTTGAAAAATGACTTCAGCACTACATGTGCTGCTTACTGTAGTTCTTTTTTTCCTAATAGTTTTCATGGCAATTCTTCTCTTCTTTCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAARGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCGTTTACTACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATTCCCGATATTTGTGATAA</pcr_primer_p1>
		<pcr_primer_p2>CGGAATTTCGAGAACATTATT</pcr_primer_p2>
		<pcr_amplicon_size>475</pcr_amplicon_size>
		<canonical_amplicon>TCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAAAGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCG</canonical_amplicon>
		<polymorphic_amplicon>TCTATTCCCGATATTTGTGATAATATCTAGAAAAAACCGAAAAAAAGACCAAGAGCTCGCCATCTACCCGATAATTAATCACTGTTTCAAAGTAAGCGTTATCTTTTATGTTTTATCAATTTTCTTGTTTCTTTATTTGATAGCAATAGTTTTGGTGTCATATTTCAATGTGTTATCGGAARGGTAAAAAATGACAAACCTGTAATAGGAAGGCCTATAAGTTTGAGCTCATTTTTCTGGGCTCCAATGCGAGATATCGAAATTGTGTGAACTGATAAAATGTTTCTGATAATATGATAAACAATCTATCAGTTGACAACTTTTTGATATCTTTGACAGAGACCAAGAAAAGCTGGCTCAAAAATTATATATTAGGTTGGAAGGAAAGTGACTGTCCCTTGTTTTATTTTTGAATAATACAAAAACCAGATTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32393</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>14437</contig_pos>
        <strand>+</strand>
        <context>TTCAGATATC[G/T]GTGTGTCCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGAGATTCTAGGGGACTCTGGATCCCAGGAGTCTGGAACTTCAGATATC</left_flank>
        <right_flank>GTGTGTCCAGATGTCCGGATTTACATAAAAATCCAAATTTCTAGGATTTT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCTGGGAGAATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGATATCTGTGTGTCCAGATGCCCGGATTTACATAAAAATCCAAATTCCAGAGATATCCTAAAAGATTCTAGGGGACTCTGAAGCCCAGGAGTCTGATAATTTCAGATATTTGTGTGTCCACATGTCCGGATGTCCAGAAAATTCCAAATTTCTTGAAAATGCCGAATTTCAGTGAGGATTCTGTGGAATTCTGAAGCCCAGGCGTCTGATAATTTCAGATATCTGTGTGTCCAGATGTCCGGATTTACATGAAAATCCAAATTTCTGGAGAATACCGAATTTTTGGGAGATTCTGAGGGGTTCTGAAGCCCAGGAATCTGATAGTTTCAGATATCTGTGTGTCCAGATGTCCGGATTTACATAAAAATTCAAATTCCAGAGAGATCCTAAGAGATTCTAGGGGACTCTGGATCCCAGGAGTCTGGAACTTCAGATATCGGTGTGTCCAGATGTCCGGATTTACATAAAAATCCAAATTTCTAGGATTTTAAATATCCGGGAGAATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGATGTCTGTGTGTCCAGATGTCCGGATAGCCAGAAATTCAAATTTCTGAAGATTGCTTAATAATTGGGATATTCTGAGGGATCCTAGAGCCCAGAAATCCGAGAATTTCTGTGTGTCCAGGCGTCCAGAAATCCAAATTCCATGGAGATTCTGAAGGATTCTGAAGACCAGAAGTGCCCAATATTTCAGATATCTGTGTGTCCAGATGTCCAAAATGACCACGAATTGAATGTTCTAGATTCTAGAACCCAAAACTTCAAAAATCCAGGGAGAATAGACTCAAGGACTTTGAGCTCTCTGCAAATCTGTATATCCAGATGTCCGGATGTCCAACTTTTGCTATTCTAAAATTCGAATCGACTTCTGGGTATCCACGTGTCTCAAAT</canonical>
            <polymorphic>TATCTGGGAGAATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGATATCTGTGTGTCCAGATGCCCGGATTTACATAAAAATCCAAATTCCAGAGATATCCTAAAAGATTCTAGGGGACTCTGAAGCCCAGGAGTCTGATAATTTCAGATATTTGTGTGTCCACATGTCCGGATGTCCAGAAAATTCCAAATTTCTTGAAAATGCCGAATTTCAGTGAGGATTCTGTGGAATTCTGAAGCCCAGGCGTCTGATAATTTCAGATATCTGTGTGTCCAGATGTCCGGATTTACATGAAAATCCAAATTTCTGGAGAATACCGAATTTTTGGGAGATTCTGAGGGGTTCTGAAGCCCAGGAATCTGATAGTTTCAGATATCTGTGTGTCCAGATGTCCGGATTTACATAAAAATTCAAATTCCAGAGAGATCCTAAGAGATTCTAGGGGACTCTGGATCCCAGGAGTCTGGAACTTCAGATATCKGTGTGTCCAGATGTCCGGATTTACATAAAAATCCAAATTTCTAGGATTTTAAATATCCGGGAGAATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGATGTCTGTGTGTCCAGATGTCCGGATAGCCAGAAATTCAAATTTCTGAAGATTGCTTAATAATTGGGATATTCTGAGGGATCCTAGAGCCCAGAAATCCGAGAATTTCTGTGTGTCCAGGCGTCCAGAAATCCAAATTCCATGGAGATTCTGAAGGATTCTGAAGACCAGAAGTGCCCAATATTTCAGATATCTGTGTGTCCAGATGTCCAAAATGACCACGAATTGAATGTTCTAGATTCTAGAACCCAAAACTTCAAAAATCCAGGGAGAATAGACTCAAGGACTTTGAGCTCTCTGCAAATCTGTATATCCAGATGTCCGGATGTCCAACTTTTGCTATTCTAAAATTCGAATCGACTTCTGGGTATCCACGTGTCTCAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACCGAATTTTTGGGAGAT</pcr_primer_p1>
		<pcr_primer_p2>TCTCAAGATTCTTCACCTATTCTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATACCGAATTTTTGGGAGATTCTGAGGGGTTCTGAAGCCCAGGAATCTGATAGTTTCAGATATCTGTGTGTCCAGATGTCCGGATTTACATAAAAATTCAAATTCCAGAGAGATCCTAAGAGATTCTAGGGGACTCTGGATCCCAGGAGTCTGGAACTTCAGATATCGGTGTGTCCAGATGTCCGGATTTACATAAAAATCCAAATTTCTAGGATTTTAAATATCCGGGAGAATAGGTGAAGAATCTTGAGA</canonical_amplicon>
		<polymorphic_amplicon>ATACCGAATTTTTGGGAGATTCTGAGGGGTTCTGAAGCCCAGGAATCTGATAGTTTCAGATATCTGTGTGTCCAGATGTCCGGATTTACATAAAAATTCAAATTCCAGAGAGATCCTAAGAGATTCTAGGGGACTCTGGATCCCAGGAGTCTGGAACTTCAGATATCKGTGTGTCCAGATGTCCGGATTTACATAAAAATCCAAATTTCTAGGATTTTAAATATCCGGGAGAATAGGTGAAGAATCTTGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32394</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>14487</contig_pos>
        <strand>+</strand>
        <context>TCTAGGATTT[C/T]AAATATCCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTGTGTCCAGATGTCCGGATTTACATAAAAATCCAAATTTCTAGGATTT</left_flank>
        <right_flank>AAATATCCGGGAGAATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGGAATTTCAGATATCTGTGTGTCCAGATGCCCGGATTTACATAAAAATCCAAATTCCAGAGATATCCTAAAAGATTCTAGGGGACTCTGAAGCCCAGGAGTCTGATAATTTCAGATATTTGTGTGTCCACATGTCCGGATGTCCAGAAAATTCCAAATTTCTTGAAAATGCCGAATTTCAGTGAGGATTCTGTGGAATTCTGAAGCCCAGGCGTCTGATAATTTCAGATATCTGTGTGTCCAGATGTCCGGATTTACATGAAAATCCAAATTTCTGGAGAATACCGAATTTTTGGGAGATTCTGAGGGGTTCTGAAGCCCAGGAATCTGATAGTTTCAGATATCTGTGTGTCCAGATGTCCGGATTTACATAAAAATTCAAATTCCAGAGAGATCCTAAGAGATTCTAGGGGACTCTGGATCCCAGGAGTCTGGAACTTCAGATATCGGTGTGTCCAGATGTCCGGATTTACATAAAAATCCAAATTTCTAGGATTTTAAATATCCGGGAGAATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGATGTCTGTGTGTCCAGATGTCCGGATAGCCAGAAATTCAAATTTCTGAAGATTGCTTAATAATTGGGATATTCTGAGGGATCCTAGAGCCCAGAAATCCGAGAATTTCTGTGTGTCCAGGCGTCCAGAAATCCAAATTCCATGGAGATTCTGAAGGATTCTGAAGACCAGAAGTGCCCAATATTTCAGATATCTGTGTGTCCAGATGTCCAAAATGACCACGAATTGAATGTTCTAGATTCTAGAACCCAAAACTTCAAAAATCCAGGGAGAATAGACTCAAGGACTTTGAGCTCTCTGCAAATCTGTATATCCAGATGTCCGGATGTCCAACTTTTGCTATTCTAAAATTCGAATCGACTTCTGGGTATCCACGTGTCTCAAATTCGAATTTTCTAGACTTTCCTATCTATCGGAGTGTCCAGATGTCCAGATT</canonical>
            <polymorphic>CTGGAATTTCAGATATCTGTGTGTCCAGATGCCCGGATTTACATAAAAATCCAAATTCCAGAGATATCCTAAAAGATTCTAGGGGACTCTGAAGCCCAGGAGTCTGATAATTTCAGATATTTGTGTGTCCACATGTCCGGATGTCCAGAAAATTCCAAATTTCTTGAAAATGCCGAATTTCAGTGAGGATTCTGTGGAATTCTGAAGCCCAGGCGTCTGATAATTTCAGATATCTGTGTGTCCAGATGTCCGGATTTACATGAAAATCCAAATTTCTGGAGAATACCGAATTTTTGGGAGATTCTGAGGGGTTCTGAAGCCCAGGAATCTGATAGTTTCAGATATCTGTGTGTCCAGATGTCCGGATTTACATAAAAATTCAAATTCCAGAGAGATCCTAAGAGATTCTAGGGGACTCTGGATCCCAGGAGTCTGGAACTTCAGATATCGGTGTGTCCAGATGTCCGGATTTACATAAAAATCCAAATTTCTAGGATTTYAAATATCCGGGAGAATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGATGTCTGTGTGTCCAGATGTCCGGATAGCCAGAAATTCAAATTTCTGAAGATTGCTTAATAATTGGGATATTCTGAGGGATCCTAGAGCCCAGAAATCCGAGAATTTCTGTGTGTCCAGGCGTCCAGAAATCCAAATTCCATGGAGATTCTGAAGGATTCTGAAGACCAGAAGTGCCCAATATTTCAGATATCTGTGTGTCCAGATGTCCAAAATGACCACGAATTGAATGTTCTAGATTCTAGAACCCAAAACTTCAAAAATCCAGGGAGAATAGACTCAAGGACTTTGAGCTCTCTGCAAATCTGTATATCCAGATGTCCGGATGTCCAACTTTTGCTATTCTAAAATTCGAATCGACTTCTGGGTATCCACGTGTCTCAAATTCGAATTTTCTAGACTTTCCTATCTATCGGAGTGTCCAGATGTCCAGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>499 379 122</canonical_bands>
                <polymorphic_bands>621 379</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGGAGTCTGGAACTTCAGATA</pcr_primer_p1>
		<pcr_primer_p2>AAATATTGGGCACTTCTGGT</pcr_primer_p2>
		<pcr_amplicon_size>325</pcr_amplicon_size>
		<canonical_amplicon>CAGGAGTCTGGAACTTCAGATATCGGTGTGTCCAGATGTCCGGATTTACATAAAAATCCAAATTTCTAGGATTTTAAATATCCGGGAGAATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGATGTCTGTGTGTCCAGATGTCCGGATAGCCAGAAATTCAAATTTCTGAAGATTGCTTAATAATTGGGATATTCTGAGGGATCCTAGAGCCCAGAAATCCGAGAATTTCTGTGTGTCCAGGCGTCCAGAAATCCAAATTCCATGGAGATTCTGAAGGATTCTGAAGACCAGAAGTGCCCAATATTT</canonical_amplicon>
		<polymorphic_amplicon>CAGGAGTCTGGAACTTCAGATATCGGTGTGTCCAGATGTCCGGATTTACATAAAAATCCAAATTTCTAGGATTTYAAATATCCGGGAGAATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGATGTCTGTGTGTCCAGATGTCCGGATAGCCAGAAATTCAAATTTCTGAAGATTGCTTAATAATTGGGATATTCTGAGGGATCCTAGAGCCCAGAAATCCGAGAATTTCTGTGTGTCCAGGCGTCCAGAAATCCAAATTCCATGGAGATTCTGAAGGATTCTGAAGACCAGAAGTGCCCAATATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32395</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>14555</contig_pos>
        <strand>+</strand>
        <context>AATTTCAGAT[A/G]TCTGTGTGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGAT</left_flank>
        <right_flank>TCTGTGTGTCCAGATGTCCGGATAGCCAGAAATTCAAATTTCTGAAGATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAAAAGATTCTAGGGGACTCTGAAGCCCAGGAGTCTGATAATTTCAGATATTTGTGTGTCCACATGTCCGGATGTCCAGAAAATTCCAAATTTCTTGAAAATGCCGAATTTCAGTGAGGATTCTGTGGAATTCTGAAGCCCAGGCGTCTGATAATTTCAGATATCTGTGTGTCCAGATGTCCGGATTTACATGAAAATCCAAATTTCTGGAGAATACCGAATTTTTGGGAGATTCTGAGGGGTTCTGAAGCCCAGGAATCTGATAGTTTCAGATATCTGTGTGTCCAGATGTCCGGATTTACATAAAAATTCAAATTCCAGAGAGATCCTAAGAGATTCTAGGGGACTCTGGATCCCAGGAGTCTGGAACTTCAGATATCGGTGTGTCCAGATGTCCGGATTTACATAAAAATCCAAATTTCTAGGATTTTAAATATCCGGGAGAATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGATGTCTGTGTGTCCAGATGTCCGGATAGCCAGAAATTCAAATTTCTGAAGATTGCTTAATAATTGGGATATTCTGAGGGATCCTAGAGCCCAGAAATCCGAGAATTTCTGTGTGTCCAGGCGTCCAGAAATCCAAATTCCATGGAGATTCTGAAGGATTCTGAAGACCAGAAGTGCCCAATATTTCAGATATCTGTGTGTCCAGATGTCCAAAATGACCACGAATTGAATGTTCTAGATTCTAGAACCCAAAACTTCAAAAATCCAGGGAGAATAGACTCAAGGACTTTGAGCTCTCTGCAAATCTGTATATCCAGATGTCCGGATGTCCAACTTTTGCTATTCTAAAATTCGAATCGACTTCTGGGTATCCACGTGTCTCAAATTCGAATTTTCTAGACTTTCCTATCTATCGGAGTGTCCAGATGTCCAGATTTCTCAGATGTCTGTGTATCTACACTTTCGGATGTCCGACTTTTCAAATAATCTAGAGGAAAGCTTTAA</canonical>
            <polymorphic>CTAAAAGATTCTAGGGGACTCTGAAGCCCAGGAGTCTGATAATTTCAGATATTTGTGTGTCCACATGTCCGGATGTCCAGAAAATTCCAAATTTCTTGAAAATGCCGAATTTCAGTGAGGATTCTGTGGAATTCTGAAGCCCAGGCGTCTGATAATTTCAGATATCTGTGTGTCCAGATGTCCGGATTTACATGAAAATCCAAATTTCTGGAGAATACCGAATTTTTGGGAGATTCTGAGGGGTTCTGAAGCCCAGGAATCTGATAGTTTCAGATATCTGTGTGTCCAGATGTCCGGATTTACATAAAAATTCAAATTCCAGAGAGATCCTAAGAGATTCTAGGGGACTCTGGATCCCAGGAGTCTGGAACTTCAGATATCGGTGTGTCCAGATGTCCGGATTTACATAAAAATCCAAATTTCTAGGATTTTAAATATCCGGGAGAATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGATRTCTGTGTGTCCAGATGTCCGGATAGCCAGAAATTCAAATTTCTGAAGATTGCTTAATAATTGGGATATTCTGAGGGATCCTAGAGCCCAGAAATCCGAGAATTTCTGTGTGTCCAGGCGTCCAGAAATCCAAATTCCATGGAGATTCTGAAGGATTCTGAAGACCAGAAGTGCCCAATATTTCAGATATCTGTGTGTCCAGATGTCCAAAATGACCACGAATTGAATGTTCTAGATTCTAGAACCCAAAACTTCAAAAATCCAGGGAGAATAGACTCAAGGACTTTGAGCTCTCTGCAAATCTGTATATCCAGATGTCCGGATGTCCAACTTTTGCTATTCTAAAATTCGAATCGACTTCTGGGTATCCACGTGTCTCAAATTCGAATTTTCTAGACTTTCCTATCTATCGGAGTGTCCAGATGTCCAGATTTCTCAGATGTCTGTGTATCTACACTTTCGGATGTCCGACTTTTCAAATAATCTAGAGGAAAGCTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAATAGGTGAAGAATCTTGAGAC</pcr_primer_p1>
		<pcr_primer_p2>AGATATCTGAAATATTGGGCACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGAATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGATGTCTGTGTGTCCAGATGTCCGGATAGCCAGAAATTCAAATTTCTGAAGATTGCTTAATAATTGGGATATTCTGAGGGATCCTAGAGCCCAGAAATCCGAGAATTTCTGTGTGTCCAGGCGTCCAGAAATCCAAATTCCATGGAGATTCTGAAGGATTCTGAAGACCAGAAGTGCCCAATATTTCAGATATCT</canonical_amplicon>
		<polymorphic_amplicon>AGAATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGATRTCTGTGTGTCCAGATGTCCGGATAGCCAGAAATTCAAATTTCTGAAGATTGCTTAATAATTGGGATATTCTGAGGGATCCTAGAGCCCAGAAATCCGAGAATTTCTGTGTGTCCAGGCGTCCAGAAATCCAAATTCCATGGAGATTCTGAAGGATTCTGAAGACCAGAAGTGCCCAATATTTCAGATATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32396</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>14601</contig_pos>
        <strand></strand>
        <context>aaatttctga[A/C]gattgcttaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGATGTCTGTGTGTCCAGATGTCCGGATAGCCAGAAATTCAAATTTCTGA</left_flank>
        <right_flank>GATTGCTTAATAATTGGGATATTCTGAGGGATCCTAGAGCCCAGAAATCC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATATTTGTGTGTCCACATGTCCGGATGTCCAGAAAATTCCAAATTTCTTGAAAATGCCGAATTTCAGTGAGGATTCTGTGGAATTCTGAAGCCCAGGCGTCTGATAATTTCAGATATCTGTGTGTCCAGATGTCCGGATTTACATGAAAATCCAAATTTCTGGAGAATACCGAATTTTTGGGAGATTCTGAGGGGTTCTGAAGCCCAGGAATCTGATAGTTTCAGATATCTGTGTGTCCAGATGTCCGGATTTACATAAAAATTCAAATTCCAGAGAGATCCTAAGAGATTCTAGGGGACTCTGGATCCCAGGAGTCTGGAACTTCAGATATCGGTGTGTCCAGATGTCCGGATTTACATAAAAATCCAAATTTCTAGGATTTTAAATATCCGGGAGAATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGATGTCTGTGTGTCCAGATGTCCGGATAGCCAGAAATTCAAATTTCTGAAGATTGCTTAATAATTGGGATATTCTGAGGGATCCTAGAGCCCAGAAATCCGAGAATTTCTGTGTGTCCAGGCGTCCAGAAATCCAAATTCCATGGAGATTCTGAAGGATTCTGAAGACCAGAAGTGCCCAATATTTCAGATATCTGTGTGTCCAGATGTCCAAAATGACCACGAATTGAATGTTCTAGATTCTAGAACCCAAAACTTCAAAAATCCAGGGAGAATAGACTCAAGGACTTTGAGCTCTCTGCAAATCTGTATATCCAGATGTCCGGATGTCCAACTTTTGCTATTCTAAAATTCGAATCGACTTCTGGGTATCCACGTGTCTCAAATTCGAATTTTCTAGACTTTCCTATCTATCGGAGTGTCCAGATGTCCAGATTTCTCAGATGTCTGTGTATCTACACTTTCGGATGTCCGACTTTTCAAATAATCTAGAGGAAAGCTTTAAAAAAAGCATATCTTGAGGCTCTGAATGTCCAAAAACTGGAATTTCT</canonical>
            <polymorphic>AGATATTTGTGTGTCCACATGTCCGGATGTCCAGAAAATTCCAAATTTCTTGAAAATGCCGAATTTCAGTGAGGATTCTGTGGAATTCTGAAGCCCAGGCGTCTGATAATTTCAGATATCTGTGTGTCCAGATGTCCGGATTTACATGAAAATCCAAATTTCTGGAGAATACCGAATTTTTGGGAGATTCTGAGGGGTTCTGAAGCCCAGGAATCTGATAGTTTCAGATATCTGTGTGTCCAGATGTCCGGATTTACATAAAAATTCAAATTCCAGAGAGATCCTAAGAGATTCTAGGGGACTCTGGATCCCAGGAGTCTGGAACTTCAGATATCGGTGTGTCCAGATGTCCGGATTTACATAAAAATCCAAATTTCTAGGATTTTAAATATCCGGGAGAATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGATGTCTGTGTGTCCAGATGTCCGGATAGCCAGAAATTCAAATTTCTGAMGATTGCTTAATAATTGGGATATTCTGAGGGATCCTAGAGCCCAGAAATCCGAGAATTTCTGTGTGTCCAGGCGTCCAGAAATCCAAATTCCATGGAGATTCTGAAGGATTCTGAAGACCAGAAGTGCCCAATATTTCAGATATCTGTGTGTCCAGATGTCCAAAATGACCACGAATTGAATGTTCTAGATTCTAGAACCCAAAACTTCAAAAATCCAGGGAGAATAGACTCAAGGACTTTGAGCTCTCTGCAAATCTGTATATCCAGATGTCCGGATGTCCAACTTTTGCTATTCTAAAATTCGAATCGACTTCTGGGTATCCACGTGTCTCAAATTCGAATTTTCTAGACTTTCCTATCTATCGGAGTGTCCAGATGTCCAGATTTCTCAGATGTCTGTGTATCTACACTTTCGGATGTCCGACTTTTCAAATAATCTAGAGGAAAGCTTTAAAAAAAGCATATCTTGAGGCTCTGAATGTCCAAAAACTGGAATTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAATAGGTGAAGAATCTTGAGAC</pcr_primer_p1>
		<pcr_primer_p2>AGATATCTGAAATATTGGGCACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGAATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGATGTCTGTGTGTCCAGATGTCCGGATAGCCAGAAATTCAAATTTCTGAAGATTGCTTAATAATTGGGATATTCTGAGGGATCCTAGAGCCCAGAAATCCGAGAATTTCTGTGTGTCCAGGCGTCCAGAAATCCAAATTCCATGGAGATTCTGAAGGATTCTGAAGACCAGAAGTGCCCAATATTTCAGATATCT</canonical_amplicon>
		<polymorphic_amplicon>AGAATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGATGTCTGTGTGTCCAGATGTCCGGATAGCCAGAAATTCAAATTTCTGAMGATTGCTTAATAATTGGGATATTCTGAGGGATCCTAGAGCCCAGAAATCCGAGAATTTCTGTGTGTCCAGGCGTCCAGAAATCCAAATTCCATGGAGATTCTGAAGGATTCTGAAGACCAGAAGTGCCCAATATTTCAGATATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32397</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>14625</contig_pos>
        <strand></strand>
        <context>ttgggatatt[C/G]tgagggatcc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGATAGCCAGAAATTCAAATTTCTGAAGATTGCTTAATAATTGGGATATT</left_flank>
        <right_flank>TGAGGGATCCTAGAGCCCAGAAATCCGAGAATTTCTGTGTGTCCAGGCGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATGTCCAGAAAATTCCAAATTTCTTGAAAATGCCGAATTTCAGTGAGGATTCTGTGGAATTCTGAAGCCCAGGCGTCTGATAATTTCAGATATCTGTGTGTCCAGATGTCCGGATTTACATGAAAATCCAAATTTCTGGAGAATACCGAATTTTTGGGAGATTCTGAGGGGTTCTGAAGCCCAGGAATCTGATAGTTTCAGATATCTGTGTGTCCAGATGTCCGGATTTACATAAAAATTCAAATTCCAGAGAGATCCTAAGAGATTCTAGGGGACTCTGGATCCCAGGAGTCTGGAACTTCAGATATCGGTGTGTCCAGATGTCCGGATTTACATAAAAATCCAAATTTCTAGGATTTTAAATATCCGGGAGAATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGATGTCTGTGTGTCCAGATGTCCGGATAGCCAGAAATTCAAATTTCTGAAGATTGCTTAATAATTGGGATATTCTGAGGGATCCTAGAGCCCAGAAATCCGAGAATTTCTGTGTGTCCAGGCGTCCAGAAATCCAAATTCCATGGAGATTCTGAAGGATTCTGAAGACCAGAAGTGCCCAATATTTCAGATATCTGTGTGTCCAGATGTCCAAAATGACCACGAATTGAATGTTCTAGATTCTAGAACCCAAAACTTCAAAAATCCAGGGAGAATAGACTCAAGGACTTTGAGCTCTCTGCAAATCTGTATATCCAGATGTCCGGATGTCCAACTTTTGCTATTCTAAAATTCGAATCGACTTCTGGGTATCCACGTGTCTCAAATTCGAATTTTCTAGACTTTCCTATCTATCGGAGTGTCCAGATGTCCAGATTTCTCAGATGTCTGTGTATCTACACTTTCGGATGTCCGACTTTTCAAATAATCTAGAGGAAAGCTTTAAAAAAAGCATATCTTGAGGCTCTGAATGTCCAAAAACTGGAATTTCTGTTTATCCGAATGTCCAGGTGTCC</canonical>
            <polymorphic>GGATGTCCAGAAAATTCCAAATTTCTTGAAAATGCCGAATTTCAGTGAGGATTCTGTGGAATTCTGAAGCCCAGGCGTCTGATAATTTCAGATATCTGTGTGTCCAGATGTCCGGATTTACATGAAAATCCAAATTTCTGGAGAATACCGAATTTTTGGGAGATTCTGAGGGGTTCTGAAGCCCAGGAATCTGATAGTTTCAGATATCTGTGTGTCCAGATGTCCGGATTTACATAAAAATTCAAATTCCAGAGAGATCCTAAGAGATTCTAGGGGACTCTGGATCCCAGGAGTCTGGAACTTCAGATATCGGTGTGTCCAGATGTCCGGATTTACATAAAAATCCAAATTTCTAGGATTTTAAATATCCGGGAGAATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGATGTCTGTGTGTCCAGATGTCCGGATAGCCAGAAATTCAAATTTCTGAAGATTGCTTAATAATTGGGATATTSTGAGGGATCCTAGAGCCCAGAAATCCGAGAATTTCTGTGTGTCCAGGCGTCCAGAAATCCAAATTCCATGGAGATTCTGAAGGATTCTGAAGACCAGAAGTGCCCAATATTTCAGATATCTGTGTGTCCAGATGTCCAAAATGACCACGAATTGAATGTTCTAGATTCTAGAACCCAAAACTTCAAAAATCCAGGGAGAATAGACTCAAGGACTTTGAGCTCTCTGCAAATCTGTATATCCAGATGTCCGGATGTCCAACTTTTGCTATTCTAAAATTCGAATCGACTTCTGGGTATCCACGTGTCTCAAATTCGAATTTTCTAGACTTTCCTATCTATCGGAGTGTCCAGATGTCCAGATTTCTCAGATGTCTGTGTATCTACACTTTCGGATGTCCGACTTTTCAAATAATCTAGAGGAAAGCTTTAAAAAAAGCATATCTTGAGGCTCTGAATGTCCAAAAACTGGAATTTCTGTTTATCCGAATGTCCAGGTGTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>364 240 166 136 94</canonical_bands>
                <polymorphic_bands>604 166 136 94</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>227 121 103 77 65 54 52 47 32 28 26 26 25 24 16 15 15 10 10 10 10 7</canonical_bands>
                <polymorphic_bands>227 121 103 77 65 54 53 52 47 32 26 26 24 16 15 15 10 10 10 10 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAATAGGTGAAGAATCTTGAGAC</pcr_primer_p1>
		<pcr_primer_p2>AGATATCTGAAATATTGGGCACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGAATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGATGTCTGTGTGTCCAGATGTCCGGATAGCCAGAAATTCAAATTTCTGAAGATTGCTTAATAATTGGGATATTCTGAGGGATCCTAGAGCCCAGAAATCCGAGAATTTCTGTGTGTCCAGGCGTCCAGAAATCCAAATTCCATGGAGATTCTGAAGGATTCTGAAGACCAGAAGTGCCCAATATTTCAGATATCT</canonical_amplicon>
		<polymorphic_amplicon>AGAATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGATGTCTGTGTGTCCAGATGTCCGGATAGCCAGAAATTCAAATTTCTGAAGATTGCTTAATAATTGGGATATTSTGAGGGATCCTAGAGCCCAGAAATCCGAGAATTTCTGTGTGTCCAGGCGTCCAGAAATCCAAATTCCATGGAGATTCTGAAGGATTCTGAAGACCAGAAGTGCCCAATATTTCAGATATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32398</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>14708</contig_pos>
        <strand></strand>
        <context>gattctgaag[G/A]attctgaagA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTCTGTGTGTCCAGGCGTCCAGAAATCCAAATTCCATGGAGATTCTGAAG</left_flank>
        <right_flank>ATTCTGAAGACCAGAAGTGCCCAATATTTCAGATATCTGTGTGTCCAGAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTCAGATATCTGTGTGTCCAGATGTCCGGATTTACATGAAAATCCAAATTTCTGGAGAATACCGAATTTTTGGGAGATTCTGAGGGGTTCTGAAGCCCAGGAATCTGATAGTTTCAGATATCTGTGTGTCCAGATGTCCGGATTTACATAAAAATTCAAATTCCAGAGAGATCCTAAGAGATTCTAGGGGACTCTGGATCCCAGGAGTCTGGAACTTCAGATATCGGTGTGTCCAGATGTCCGGATTTACATAAAAATCCAAATTTCTAGGATTTTAAATATCCGGGAGAATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGATGTCTGTGTGTCCAGATGTCCGGATAGCCAGAAATTCAAATTTCTGAAGATTGCTTAATAATTGGGATATTCTGAGGGATCCTAGAGCCCAGAAATCCGAGAATTTCTGTGTGTCCAGGCGTCCAGAAATCCAAATTCCATGGAGATTCTGAAGGATTCTGAAGACCAGAAGTGCCCAATATTTCAGATATCTGTGTGTCCAGATGTCCAAAATGACCACGAATTGAATGTTCTAGATTCTAGAACCCAAAACTTCAAAAATCCAGGGAGAATAGACTCAAGGACTTTGAGCTCTCTGCAAATCTGTATATCCAGATGTCCGGATGTCCAACTTTTGCTATTCTAAAATTCGAATCGACTTCTGGGTATCCACGTGTCTCAAATTCGAATTTTCTAGACTTTCCTATCTATCGGAGTGTCCAGATGTCCAGATTTCTCAGATGTCTGTGTATCTACACTTTCGGATGTCCGACTTTTCAAATAATCTAGAGGAAAGCTTTAAAAAAAGCATATCTTGAGGCTCTGAATGTCCAAAAACTGGAATTTCTGTTTATCCGAATGTCCAGGTGTCCAGATTCCTCAGATTTCTGTGTATCTGCACTTCCGGATGTCTGCATGTTTGAAAAAATCAAGAAAAACTAATAATTTATTGGAA</canonical>
            <polymorphic>AATTTCAGATATCTGTGTGTCCAGATGTCCGGATTTACATGAAAATCCAAATTTCTGGAGAATACCGAATTTTTGGGAGATTCTGAGGGGTTCTGAAGCCCAGGAATCTGATAGTTTCAGATATCTGTGTGTCCAGATGTCCGGATTTACATAAAAATTCAAATTCCAGAGAGATCCTAAGAGATTCTAGGGGACTCTGGATCCCAGGAGTCTGGAACTTCAGATATCGGTGTGTCCAGATGTCCGGATTTACATAAAAATCCAAATTTCTAGGATTTTAAATATCCGGGAGAATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGATGTCTGTGTGTCCAGATGTCCGGATAGCCAGAAATTCAAATTTCTGAAGATTGCTTAATAATTGGGATATTCTGAGGGATCCTAGAGCCCAGAAATCCGAGAATTTCTGTGTGTCCAGGCGTCCAGAAATCCAAATTCCATGGAGATTCTGAAGRATTCTGAAGACCAGAAGTGCCCAATATTTCAGATATCTGTGTGTCCAGATGTCCAAAATGACCACGAATTGAATGTTCTAGATTCTAGAACCCAAAACTTCAAAAATCCAGGGAGAATAGACTCAAGGACTTTGAGCTCTCTGCAAATCTGTATATCCAGATGTCCGGATGTCCAACTTTTGCTATTCTAAAATTCGAATCGACTTCTGGGTATCCACGTGTCTCAAATTCGAATTTTCTAGACTTTCCTATCTATCGGAGTGTCCAGATGTCCAGATTTCTCAGATGTCTGTGTATCTACACTTTCGGATGTCCGACTTTTCAAATAATCTAGAGGAAAGCTTTAAAAAAAGCATATCTTGAGGCTCTGAATGTCCAAAAACTGGAATTTCTGTTTATCCGAATGTCCAGGTGTCCAGATTCCTCAGATTTCTGTGTATCTGCACTTCCGGATGTCTGCATGTTTGAAAAAATCAAGAAAAACTAATAATTTATTGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>222 187 95 81 81 79 79 77 39 25 15 10 10</canonical_bands>
                <polymorphic_bands>222 187 95 91 81 79 79 77 39 25 15 10</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>222 187 120 116 81 81 79 79 25 10</canonical_bands>
                <polymorphic_bands>222 187 120 116 91 81 79 79 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAGGTGAAGAATCTTGAGACTG</pcr_primer_p1>
		<pcr_primer_p2>ATTCAATTCGTGGTCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>281</pcr_amplicon_size>
		<canonical_amplicon>ATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGATGTCTGTGTGTCCAGATGTCCGGATAGCCAGAAATTCAAATTTCTGAAGATTGCTTAATAATTGGGATATTCTGAGGGATCCTAGAGCCCAGAAATCCGAGAATTTCTGTGTGTCCAGGCGTCCAGAAATCCAAATTCCATGGAGATTCTGAAGGATTCTGAAGACCAGAAGTGCCCAATATTTCAGATATCTGTGTGTCCAGATGTCCAAAATGACCACGAATTGAAT</canonical_amplicon>
		<polymorphic_amplicon>ATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGATGTCTGTGTGTCCAGATGTCCGGATAGCCAGAAATTCAAATTTCTGAAGATTGCTTAATAATTGGGATATTCTGAGGGATCCTAGAGCCCAGAAATCCGAGAATTTCTGTGTGTCCAGGCGTCCAGAAATCCAAATTCCATGGAGATTCTGAAGRATTCTGAAGACCAGAAGTGCCCAATATTTCAGATATCTGTGTGTCCAGATGTCCAAAATGACCACGAATTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32399</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>14760</contig_pos>
        <strand>+</strand>
        <context>TGTCCAGATG[C/T]CCAAAATGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTGAAGACCAGAAGTGCCCAATATTTCAGATATCTGTGTGTCCAGATG</left_flank>
        <right_flank>CCAAAATGACCACGAATTGAATGTTCTAGATTCTAGAACCCAAAACTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGGAGAATACCGAATTTTTGGGAGATTCTGAGGGGTTCTGAAGCCCAGGAATCTGATAGTTTCAGATATCTGTGTGTCCAGATGTCCGGATTTACATAAAAATTCAAATTCCAGAGAGATCCTAAGAGATTCTAGGGGACTCTGGATCCCAGGAGTCTGGAACTTCAGATATCGGTGTGTCCAGATGTCCGGATTTACATAAAAATCCAAATTTCTAGGATTTTAAATATCCGGGAGAATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGATGTCTGTGTGTCCAGATGTCCGGATAGCCAGAAATTCAAATTTCTGAAGATTGCTTAATAATTGGGATATTCTGAGGGATCCTAGAGCCCAGAAATCCGAGAATTTCTGTGTGTCCAGGCGTCCAGAAATCCAAATTCCATGGAGATTCTGAAGGATTCTGAAGACCAGAAGTGCCCAATATTTCAGATATCTGTGTGTCCAGATGTCCAAAATGACCACGAATTGAATGTTCTAGATTCTAGAACCCAAAACTTCAAAAATCCAGGGAGAATAGACTCAAGGACTTTGAGCTCTCTGCAAATCTGTATATCCAGATGTCCGGATGTCCAACTTTTGCTATTCTAAAATTCGAATCGACTTCTGGGTATCCACGTGTCTCAAATTCGAATTTTCTAGACTTTCCTATCTATCGGAGTGTCCAGATGTCCAGATTTCTCAGATGTCTGTGTATCTACACTTTCGGATGTCCGACTTTTCAAATAATCTAGAGGAAAGCTTTAAAAAAAGCATATCTTGAGGCTCTGAATGTCCAAAAACTGGAATTTCTGTTTATCCGAATGTCCAGGTGTCCAGATTCCTCAGATTTCTGTGTATCTGCACTTCCGGATGTCTGCATGTTTGAAAAAATCAAGAAAAACTAATAATTTATTGGAATAATGGAGGCTTTACAACAAGAAACAGAGAATTCTGAGTGTCCAGATGTCCA</canonical>
            <polymorphic>TTCTGGAGAATACCGAATTTTTGGGAGATTCTGAGGGGTTCTGAAGCCCAGGAATCTGATAGTTTCAGATATCTGTGTGTCCAGATGTCCGGATTTACATAAAAATTCAAATTCCAGAGAGATCCTAAGAGATTCTAGGGGACTCTGGATCCCAGGAGTCTGGAACTTCAGATATCGGTGTGTCCAGATGTCCGGATTTACATAAAAATCCAAATTTCTAGGATTTTAAATATCCGGGAGAATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGATGTCTGTGTGTCCAGATGTCCGGATAGCCAGAAATTCAAATTTCTGAAGATTGCTTAATAATTGGGATATTCTGAGGGATCCTAGAGCCCAGAAATCCGAGAATTTCTGTGTGTCCAGGCGTCCAGAAATCCAAATTCCATGGAGATTCTGAAGGATTCTGAAGACCAGAAGTGCCCAATATTTCAGATATCTGTGTGTCCAGATGYCCAAAATGACCACGAATTGAATGTTCTAGATTCTAGAACCCAAAACTTCAAAAATCCAGGGAGAATAGACTCAAGGACTTTGAGCTCTCTGCAAATCTGTATATCCAGATGTCCGGATGTCCAACTTTTGCTATTCTAAAATTCGAATCGACTTCTGGGTATCCACGTGTCTCAAATTCGAATTTTCTAGACTTTCCTATCTATCGGAGTGTCCAGATGTCCAGATTTCTCAGATGTCTGTGTATCTACACTTTCGGATGTCCGACTTTTCAAATAATCTAGAGGAAAGCTTTAAAAAAAGCATATCTTGAGGCTCTGAATGTCCAAAAACTGGAATTTCTGTTTATCCGAATGTCCAGGTGTCCAGATTCCTCAGATTTCTGTGTATCTGCACTTCCGGATGTCTGCATGTTTGAAAAAATCAAGAAAAACTAATAATTTATTGGAATAATGGAGGCTTTACAACAAGAAACAGAGAATTCTGAGTGTCCAGATGTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGGTGAAGAATCTTGAGACTG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTGAAGTTTTGGGTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>314</pcr_amplicon_size>
		<canonical_amplicon>ATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGATGTCTGTGTGTCCAGATGTCCGGATAGCCAGAAATTCAAATTTCTGAAGATTGCTTAATAATTGGGATATTCTGAGGGATCCTAGAGCCCAGAAATCCGAGAATTTCTGTGTGTCCAGGCGTCCAGAAATCCAAATTCCATGGAGATTCTGAAGGATTCTGAAGACCAGAAGTGCCCAATATTTCAGATATCTGTGTGTCCAGATGTCCAAAATGACCACGAATTGAATGTTCTAGATTCTAGAACCCAAAACTTCAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGATGTCTGTGTGTCCAGATGTCCGGATAGCCAGAAATTCAAATTTCTGAAGATTGCTTAATAATTGGGATATTCTGAGGGATCCTAGAGCCCAGAAATCCGAGAATTTCTGTGTGTCCAGGCGTCCAGAAATCCAAATTCCATGGAGATTCTGAAGGATTCTGAAGACCAGAAGTGCCCAATATTTCAGATATCTGTGTGTCCAGATGYCCAAAATGACCACGAATTGAATGTTCTAGATTCTAGAACCCAAAACTTCAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32400</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>14836</contig_pos>
        <strand>+</strand>
        <context>TAGACTCAAG[A/G]ACTTTGAGCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAGATTCTAGAACCCAAAACTTCAAAAATCCAGGGAGAATAGACTCAAG</left_flank>
        <right_flank>ACTTTGAGCTCTCTGCAAATCTGTATATCCAGATGTCCGGATGTCCAACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTCCAGATGTCCGGATTTACATAAAAATTCAAATTCCAGAGAGATCCTAAGAGATTCTAGGGGACTCTGGATCCCAGGAGTCTGGAACTTCAGATATCGGTGTGTCCAGATGTCCGGATTTACATAAAAATCCAAATTTCTAGGATTTTAAATATCCGGGAGAATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGATGTCTGTGTGTCCAGATGTCCGGATAGCCAGAAATTCAAATTTCTGAAGATTGCTTAATAATTGGGATATTCTGAGGGATCCTAGAGCCCAGAAATCCGAGAATTTCTGTGTGTCCAGGCGTCCAGAAATCCAAATTCCATGGAGATTCTGAAGGATTCTGAAGACCAGAAGTGCCCAATATTTCAGATATCTGTGTGTCCAGATGTCCAAAATGACCACGAATTGAATGTTCTAGATTCTAGAACCCAAAACTTCAAAAATCCAGGGAGAATAGACTCAAGGACTTTGAGCTCTCTGCAAATCTGTATATCCAGATGTCCGGATGTCCAACTTTTGCTATTCTAAAATTCGAATCGACTTCTGGGTATCCACGTGTCTCAAATTCGAATTTTCTAGACTTTCCTATCTATCGGAGTGTCCAGATGTCCAGATTTCTCAGATGTCTGTGTATCTACACTTTCGGATGTCCGACTTTTCAAATAATCTAGAGGAAAGCTTTAAAAAAAGCATATCTTGAGGCTCTGAATGTCCAAAAACTGGAATTTCTGTTTATCCGAATGTCCAGGTGTCCAGATTCCTCAGATTTCTGTGTATCTGCACTTCCGGATGTCTGCATGTTTGAAAAAATCAAGAAAAACTAATAATTTATTGGAATAATGGAGGCTTTACAACAAGAAACAGAGAATTCTGAGTGTCCAGATGTCCAGATATCCAAAATTGGGACTCCTGTGTGTCCTGGTGTCCAGATGTCCAAAAGTCCAAAAAATATGGTTCGTGTGTGT</canonical>
            <polymorphic>GTGTCCAGATGTCCGGATTTACATAAAAATTCAAATTCCAGAGAGATCCTAAGAGATTCTAGGGGACTCTGGATCCCAGGAGTCTGGAACTTCAGATATCGGTGTGTCCAGATGTCCGGATTTACATAAAAATCCAAATTTCTAGGATTTTAAATATCCGGGAGAATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGATGTCTGTGTGTCCAGATGTCCGGATAGCCAGAAATTCAAATTTCTGAAGATTGCTTAATAATTGGGATATTCTGAGGGATCCTAGAGCCCAGAAATCCGAGAATTTCTGTGTGTCCAGGCGTCCAGAAATCCAAATTCCATGGAGATTCTGAAGGATTCTGAAGACCAGAAGTGCCCAATATTTCAGATATCTGTGTGTCCAGATGTCCAAAATGACCACGAATTGAATGTTCTAGATTCTAGAACCCAAAACTTCAAAAATCCAGGGAGAATAGACTCAAGRACTTTGAGCTCTCTGCAAATCTGTATATCCAGATGTCCGGATGTCCAACTTTTGCTATTCTAAAATTCGAATCGACTTCTGGGTATCCACGTGTCTCAAATTCGAATTTTCTAGACTTTCCTATCTATCGGAGTGTCCAGATGTCCAGATTTCTCAGATGTCTGTGTATCTACACTTTCGGATGTCCGACTTTTCAAATAATCTAGAGGAAAGCTTTAAAAAAAGCATATCTTGAGGCTCTGAATGTCCAAAAACTGGAATTTCTGTTTATCCGAATGTCCAGGTGTCCAGATTCCTCAGATTTCTGTGTATCTGCACTTCCGGATGTCTGCATGTTTGAAAAAATCAAGAAAAACTAATAATTTATTGGAATAATGGAGGCTTTACAACAAGAAACAGAGAATTCTGAGTGTCCAGATGTCCAGATATCCAAAATTGGGACTCCTGTGTGTCCTGGTGTCCAGATGTCCAAAAGTCCAAAAAATATGGTTCGTGTGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTGCCCAATATTTCAGAT</pcr_primer_p1>
		<pcr_primer_p2>CACTCCGATAGATAGGAAAGTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGTGCCCAATATTTCAGATATCTGTGTGTCCAGATGTCCAAAATGACCACGAATTGAATGTTCTAGATTCTAGAACCCAAAACTTCAAAAATCCAGGGAGAATAGACTCAAGGACTTTGAGCTCTCTGCAAATCTGTATATCCAGATGTCCGGATGTCCAACTTTTGCTATTCTAAAATTCGAATCGACTTCTGGGTATCCACGTGTCTCAAATTCGAATTTTCTAGACTTTCCTATCTATCGGAGTG</canonical_amplicon>
		<polymorphic_amplicon>GAAGTGCCCAATATTTCAGATATCTGTGTGTCCAGATGTCCAAAATGACCACGAATTGAATGTTCTAGATTCTAGAACCCAAAACTTCAAAAATCCAGGGAGAATAGACTCAAGRACTTTGAGCTCTCTGCAAATCTGTATATCCAGATGTCCGGATGTCCAACTTTTGCTATTCTAAAATTCGAATCGACTTCTGGGTATCCACGTGTCTCAAATTCGAATTTTCTAGACTTTCCTATCTATCGGAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32401</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>14926</contig_pos>
        <strand>+</strand>
        <context>TGGGTATCCA[C/G]GTGTCTCAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GATGTCCAACTTTTGCTATTCTAAAATTCGAATCGACTTCTGGGTATCCA</left_flank>
        <right_flank>GTGTCTCAAATTCGAATTTTCTAGACTTTCCTATCTATCGGAGTGTCCAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAGATATCGGTGTGTCCAGATGTCCGGATTTACATAAAAATCCAAATTTCTAGGATTTTAAATATCCGGGAGAATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGATGTCTGTGTGTCCAGATGTCCGGATAGCCAGAAATTCAAATTTCTGAAGATTGCTTAATAATTGGGATATTCTGAGGGATCCTAGAGCCCAGAAATCCGAGAATTTCTGTGTGTCCAGGCGTCCAGAAATCCAAATTCCATGGAGATTCTGAAGGATTCTGAAGACCAGAAGTGCCCAATATTTCAGATATCTGTGTGTCCAGATGTCCAAAATGACCACGAATTGAATGTTCTAGATTCTAGAACCCAAAACTTCAAAAATCCAGGGAGAATAGACTCAAGGACTTTGAGCTCTCTGCAAATCTGTATATCCAGATGTCCGGATGTCCAACTTTTGCTATTCTAAAATTCGAATCGACTTCTGGGTATCCACGTGTCTCAAATTCGAATTTTCTAGACTTTCCTATCTATCGGAGTGTCCAGATGTCCAGATTTCTCAGATGTCTGTGTATCTACACTTTCGGATGTCCGACTTTTCAAATAATCTAGAGGAAAGCTTTAAAAAAAGCATATCTTGAGGCTCTGAATGTCCAAAAACTGGAATTTCTGTTTATCCGAATGTCCAGGTGTCCAGATTCCTCAGATTTCTGTGTATCTGCACTTCCGGATGTCTGCATGTTTGAAAAAATCAAGAAAAACTAATAATTTATTGGAATAATGGAGGCTTTACAACAAGAAACAGAGAATTCTGAGTGTCCAGATGTCCAGATATCCAAAATTGGGACTCCTGTGTGTCCTGGTGTCCAGATGTCCAAAAGTCCAAAAAATATGGTTCGTGTGTGTCCGTAGCGTCCAGATGTCCAGAATTCTTGGCTTCCGTCGTCGAAACCATCTTTTTAGGGTAGAAAAATTCAGAAAACACAAAACATTGAA</canonical>
            <polymorphic>TTCAGATATCGGTGTGTCCAGATGTCCGGATTTACATAAAAATCCAAATTTCTAGGATTTTAAATATCCGGGAGAATAGGTGAAGAATCTTGAGACTGTCAGGAGCCCAGAAGTCTGGAATTTCAGATGTCTGTGTGTCCAGATGTCCGGATAGCCAGAAATTCAAATTTCTGAAGATTGCTTAATAATTGGGATATTCTGAGGGATCCTAGAGCCCAGAAATCCGAGAATTTCTGTGTGTCCAGGCGTCCAGAAATCCAAATTCCATGGAGATTCTGAAGGATTCTGAAGACCAGAAGTGCCCAATATTTCAGATATCTGTGTGTCCAGATGTCCAAAATGACCACGAATTGAATGTTCTAGATTCTAGAACCCAAAACTTCAAAAATCCAGGGAGAATAGACTCAAGGACTTTGAGCTCTCTGCAAATCTGTATATCCAGATGTCCGGATGTCCAACTTTTGCTATTCTAAAATTCGAATCGACTTCTGGGTATCCASGTGTCTCAAATTCGAATTTTCTAGACTTTCCTATCTATCGGAGTGTCCAGATGTCCAGATTTCTCAGATGTCTGTGTATCTACACTTTCGGATGTCCGACTTTTCAAATAATCTAGAGGAAAGCTTTAAAAAAAGCATATCTTGAGGCTCTGAATGTCCAAAAACTGGAATTTCTGTTTATCCGAATGTCCAGGTGTCCAGATTCCTCAGATTTCTGTGTATCTGCACTTCCGGATGTCTGCATGTTTGAAAAAATCAAGAAAAACTAATAATTTATTGGAATAATGGAGGCTTTACAACAAGAAACAGAGAATTCTGAGTGTCCAGATGTCCAGATATCCAAAATTGGGACTCCTGTGTGTCCTGGTGTCCAGATGTCCAAAAGTCCAAAAAATATGGTTCGTGTGTGTCCGTAGCGTCCAGATGTCCAGAATTCTTGGCTTCCGTCGTCGAAACCATCTTTTTAGGGTAGAAAAATTCAGAAAACACAAAACATTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACGTG</site>
                <isoschizomers>
                    <enzyme>AcvI</enzyme>
                    <enzyme>BbrPI</enzyme>
                    <enzyme>Eco72I</enzyme>
                    <enzyme>PmaCI</enzyme>
                    <enzyme>PmlI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>153 112 101 95 79 66 61 53 42 37 36 31 23 22 21 14 12 8 8 8 4 2 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>157 112 101 95 79 66 61 53 42 37 36 31 23 22 21 14 12 8 8 8 2 2 2 2 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGAACCCAAAACTTCAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TAGATTATTTGAAAAGTCGGACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTAGAACCCAAAACTTCAAAAATCCAGGGAGAATAGACTCAAGGACTTTGAGCTCTCTGCAAATCTGTATATCCAGATGTCCGGATGTCCAACTTTTGCTATTCTAAAATTCGAATCGACTTCTGGGTATCCACGTGTCTCAAATTCGAATTTTCTAGACTTTCCTATCTATCGGAGTGTCCAGATGTCCAGATTTCTCAGATGTCTGTGTATCTACACTTTCGGATGTCCGACTTTTCAAATAATCTA</canonical_amplicon>
		<polymorphic_amplicon>CTAGAACCCAAAACTTCAAAAATCCAGGGAGAATAGACTCAAGGACTTTGAGCTCTCTGCAAATCTGTATATCCAGATGTCCGGATGTCCAACTTTTGCTATTCTAAAATTCGAATCGACTTCTGGGTATCCASGTGTCTCAAATTCGAATTTTCTAGACTTTCCTATCTATCGGAGTGTCCAGATGTCCAGATTTCTCAGATGTCTGTGTATCTACACTTTCGGATGTCCGACTTTTCAAATAATCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32402</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>23821</contig_pos>
        <strand></strand>
        <context>GGGGCGGAgt[C/T]tattttwttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGT</left_flank>
        <right_flank>TATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAAAATAGTTGGAAATACGGTTTCTAGGGTAATTTAAGCATTTTTAACACGTTTTTCTTATTTTCCCAGCCTAAAAATGCATCTAAAGCCCAAAAAATGGCCTGGAACATAAAATAAGAATTGGTGGCCTAGAAAATCAAAAGTTTGGGGTTTCTAGGCCATCTCTCCAAAATGAGCGGGAAACTTATTTCTAGGGTAATTTTAGCGTTTCAAAACGATTTTTTGCGTTTTCAACGCTCAAAAATGAGTCTTAAGCTATGAAAAATGGTCCAGGACAATATTTTTTTTAATTCCAAAGATTTTTCAGGTGACTACCCATCGTGTTCACTGGAATTCATTTTTAGATCCGAATGGCCGCGTGCACTACTCTCAACGTTCCTTCCGAGCATTTTAATAGTGTCTTCTGTATTTTTCGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTC</canonical>
            <polymorphic>TCGAAAATAGTTGGAAATACGGTTTCTAGGGTAATTTAAGCATTTTTAACACGTTTTTCTTATTTTCCCAGCCTAAAAATGCATCTAAAGCCCAAAAAATGGCCTGGAACATAAAATAAGAATTGGTGGCCTAGAAAATCAAAAGTTTGGGGTTTCTAGGCCATCTCTCCAAAATGAGCGGGAAACTTATTTCTAGGGTAATTTTAGCGTTTCAAAACGATTTTTTGCGTTTTCAACGCTCAAAAATGAGTCTTAAGCTATGAAAAATGGTCCAGGACAATATTTTTTTTAATTCCAAAGATTTTTCAGGTGACTACCCATCGTGTTCACTGGAATTCATTTTTAGATCCGAATGGCCGCGTGCACTACTCTCAACGTTCCTTCCGAGCATTTTAATAGTGTCTTCTGTATTTTTCGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTYTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>433 248 248 71</canonical_bands>
                <polymorphic_bands>681 248 71</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAGCATTTTAATAGTGTCTTCT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATACATGGATGGGACTT</pcr_primer_p2>
		<pcr_amplicon_size>671</pcr_amplicon_size>
		<canonical_amplicon>CGAGCATTTTAATAGTGTCTTCTGTATTTTTCGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>CGAGCATTTTAATAGTGTCTTCTGTATTTTTCGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTYTATTTTTTTTTCATTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32403</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>23828</contig_pos>
        <strand></strand>
        <context>Agtytatttt[T/A]ttttcatttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTT</left_flank>
        <right_flank>TTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTTGGAAATACGGTTTCTAGGGTAATTTAAGCATTTTTAACACGTTTTTCTTATTTTCCCAGCCTAAAAATGCATCTAAAGCCCAAAAAATGGCCTGGAACATAAAATAAGAATTGGTGGCCTAGAAAATCAAAAGTTTGGGGTTTCTAGGCCATCTCTCCAAAATGAGCGGGAAACTTATTTCTAGGGTAATTTTAGCGTTTCAAAACGATTTTTTGCGTTTTCAACGCTCAAAAATGAGTCTTAAGCTATGAAAAATGGTCCAGGACAATATTTTTTTTAATTCCAAAGATTTTTCAGGTGACTACCCATCGTGTTCACTGGAATTCATTTTTAGATCCGAATGGCCGCGTGCACTACTCTCAACGTTCCTTCCGAGCATTTTAATAGTGTCTTCTGTATTTTTCGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTT</canonical>
            <polymorphic>TAGTTGGAAATACGGTTTCTAGGGTAATTTAAGCATTTTTAACACGTTTTTCTTATTTTCCCAGCCTAAAAATGCATCTAAAGCCCAAAAAATGGCCTGGAACATAAAATAAGAATTGGTGGCCTAGAAAATCAAAAGTTTGGGGTTTCTAGGCCATCTCTCCAAAATGAGCGGGAAACTTATTTCTAGGGTAATTTTAGCGTTTCAAAACGATTTTTTGCGTTTTCAACGCTCAAAAATGAGTCTTAAGCTATGAAAAATGGTCCAGGACAATATTTTTTTTAATTCCAAAGATTTTTCAGGTGACTACCCATCGTGTTCACTGGAATTCATTTTTAGATCCGAATGGCCGCGTGCACTACTCTCAACGTTCCTTCCGAGCATTTTAATAGTGTCTTCTGTATTTTTCGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTWTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGCATTTTAATAGTGTCTTCT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATACATGGATGGGACTT</pcr_primer_p2>
		<pcr_amplicon_size>671</pcr_amplicon_size>
		<canonical_amplicon>CGAGCATTTTAATAGTGTCTTCTGTATTTTTCGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGA</canonical_amplicon>
		<polymorphic_amplicon>CGAGCATTTTAATAGTGTCTTCTGTATTTTTCGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTWTTTTCATTTTGAAAATGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32404</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>23862</contig_pos>
        <strand></strand>
        <context>ttgaattcag[T/C]gcgttgggag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAG</left_flank>
        <right_flank>GCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTAACACGTTTTTCTTATTTTCCCAGCCTAAAAATGCATCTAAAGCCCAAAAAATGGCCTGGAACATAAAATAAGAATTGGTGGCCTAGAAAATCAAAAGTTTGGGGTTTCTAGGCCATCTCTCCAAAATGAGCGGGAAACTTATTTCTAGGGTAATTTTAGCGTTTCAAAACGATTTTTTGCGTTTTCAACGCTCAAAAATGAGTCTTAAGCTATGAAAAATGGTCCAGGACAATATTTTTTTTAATTCCAAAGATTTTTCAGGTGACTACCCATCGTGTTCACTGGAATTCATTTTTAGATCCGAATGGCCGCGTGCACTACTCTCAACGTTCCTTCCGAGCATTTTAATAGTGTCTTCTGTATTTTTCGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCC</canonical>
            <polymorphic>ATTTTTAACACGTTTTTCTTATTTTCCCAGCCTAAAAATGCATCTAAAGCCCAAAAAATGGCCTGGAACATAAAATAAGAATTGGTGGCCTAGAAAATCAAAAGTTTGGGGTTTCTAGGCCATCTCTCCAAAATGAGCGGGAAACTTATTTCTAGGGTAATTTTAGCGTTTCAAAACGATTTTTTGCGTTTTCAACGCTCAAAAATGAGTCTTAAGCTATGAAAAATGGTCCAGGACAATATTTTTTTTAATTCCAAAGATTTTTCAGGTGACTACCCATCGTGTTCACTGGAATTCATTTTTAGATCCGAATGGCCGCGTGCACTACTCTCAACGTTCCTTCCGAGCATTTTAATAGTGTCTTCTGTATTTTTCGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGYGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>184 162 125 77 62 46 41 36 35 34 33 29 22 21 19 17 16 13 10 9 4 3 2</canonical_bands>
                <polymorphic_bands>184 162 125 77 62 62 41 36 35 34 33 29 22 21 19 17 13 10 9 4 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGCATTTTGATTATGGTAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAATACATGGATGGGACTT</pcr_primer_p2>
		<pcr_amplicon_size>587</pcr_amplicon_size>
		<canonical_amplicon>TTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATG</canonical_amplicon>
		<polymorphic_amplicon>TTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGYGCGTTGGGAGCTTCAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32405</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>23948</contig_pos>
        <strand></strand>
        <context>gcgtcgcgtg[A/T]cagagrgaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTG</left_flank>
        <right_flank>CAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCCTAGAAAATCAAAAGTTTGGGGTTTCTAGGCCATCTCTCCAAAATGAGCGGGAAACTTATTTCTAGGGTAATTTTAGCGTTTCAAAACGATTTTTTGCGTTTTCAACGCTCAAAAATGAGTCTTAAGCTATGAAAAATGGTCCAGGACAATATTTTTTTTAATTCCAAAGATTTTTCAGGTGACTACCCATCGTGTTCACTGGAATTCATTTTTAGATCCGAATGGCCGCGTGCACTACTCTCAACGTTCCTTCCGAGCATTTTAATAGTGTCTTCTGTATTTTTCGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTTCTGAAAATTCCGATTTTCAGCTGTCTTCTCAACGCCCCTACACTGCAACTACTCTAATGGATCTCTGGTTAT</canonical>
            <polymorphic>GGCCTAGAAAATCAAAAGTTTGGGGTTTCTAGGCCATCTCTCCAAAATGAGCGGGAAACTTATTTCTAGGGTAATTTTAGCGTTTCAAAACGATTTTTTGCGTTTTCAACGCTCAAAAATGAGTCTTAAGCTATGAAAAATGGTCCAGGACAATATTTTTTTTAATTCCAAAGATTTTTCAGGTGACTACCCATCGTGTTCACTGGAATTCATTTTTAGATCCGAATGGCCGCGTGCACTACTCTCAACGTTCCTTCCGAGCATTTTAATAGTGTCTTCTGTATTTTTCGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGWCAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTTCTGAAAATTCCGATTTTCAGCTGTCTTCTCAACGCCCCTACACTGCAACTACTCTAATGGATCTCTGGTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>314 202 183 182 119</canonical_bands>
                <polymorphic_bands>433 202 183 182</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>504 314 182</canonical_bands>
                <polymorphic_bands>818 182</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGCATTTTGATTATGGTAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAATACATGGATGGGACTT</pcr_primer_p2>
		<pcr_amplicon_size>587</pcr_amplicon_size>
		<canonical_amplicon>TTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGWCAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32406</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>23954</contig_pos>
        <strand></strand>
        <context>cgtgwcagag[G/A]gaaacttcaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAG</left_flank>
        <right_flank>GAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAATCAAAAGTTTGGGGTTTCTAGGCCATCTCTCCAAAATGAGCGGGAAACTTATTTCTAGGGTAATTTTAGCGTTTCAAAACGATTTTTTGCGTTTTCAACGCTCAAAAATGAGTCTTAAGCTATGAAAAATGGTCCAGGACAATATTTTTTTTAATTCCAAAGATTTTTCAGGTGACTACCCATCGTGTTCACTGGAATTCATTTTTAGATCCGAATGGCCGCGTGCACTACTCTCAACGTTCCTTCCGAGCATTTTAATAGTGTCTTCTGTATTTTTCGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTTCTGAAAATTCCGATTTTCAGCTGTCTTCTCAACGCCCCTACACTGCAACTACTCTAATGGATCTCTGGTTATGCTCGA</canonical>
            <polymorphic>GAAAATCAAAAGTTTGGGGTTTCTAGGCCATCTCTCCAAAATGAGCGGGAAACTTATTTCTAGGGTAATTTTAGCGTTTCAAAACGATTTTTTGCGTTTTCAACGCTCAAAAATGAGTCTTAAGCTATGAAAAATGGTCCAGGACAATATTTTTTTTAATTCCAAAGATTTTTCAGGTGACTACCCATCGTGTTCACTGGAATTCATTTTTAGATCCGAATGGCCGCGTGCACTACTCTCAACGTTCCTTCCGAGCATTTTAATAGTGTCTTCTGTATTTTTCGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGRGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTTCTGAAAATTCCGATTTTCAGCTGTCTTCTCAACGCCCCTACACTGCAACTACTCTAATGGATCTCTGGTTATGCTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGCATTTTGATTATGGTAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAATACATGGATGGGACTT</pcr_primer_p2>
		<pcr_amplicon_size>587</pcr_amplicon_size>
		<canonical_amplicon>TTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGRGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32407</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>23970</contig_pos>
        <strand>+</strand>
        <context>ttcaaagtga[A/G]cggagcctag</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGA</left_flank>
        <right_flank>CGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGTTTCTAGGCCATCTCTCCAAAATGAGCGGGAAACTTATTTCTAGGGTAATTTTAGCGTTTCAAAACGATTTTTTGCGTTTTCAACGCTCAAAAATGAGTCTTAAGCTATGAAAAATGGTCCAGGACAATATTTTTTTTAATTCCAAAGATTTTTCAGGTGACTACCCATCGTGTTCACTGGAATTCATTTTTAGATCCGAATGGCCGCGTGCACTACTCTCAACGTTCCTTCCGAGCATTTTAATAGTGTCTTCTGTATTTTTCGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTTCTGAAAATTCCGATTTTCAGCTGTCTTCTCAACGCCCCTACACTGCAACTACTCTAATGGATCTCTGGTTATGCTCGAATTTTATTCATTCAGT</canonical>
            <polymorphic>GGGTTTCTAGGCCATCTCTCCAAAATGAGCGGGAAACTTATTTCTAGGGTAATTTTAGCGTTTCAAAACGATTTTTTGCGTTTTCAACGCTCAAAAATGAGTCTTAAGCTATGAAAAATGGTCCAGGACAATATTTTTTTTAATTCCAAAGATTTTTCAGGTGACTACCCATCGTGTTCACTGGAATTCATTTTTAGATCCGAATGGCCGCGTGCACTACTCTCAACGTTCCTTCCGAGCATTTTAATAGTGTCTTCTGTATTTTTCGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGARCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTTCTGAAAATTCCGATTTTCAGCTGTCTTCTCAACGCCCCTACACTGCAACTACTCTAATGGATCTCTGGTTATGCTCGAATTTTATTCATTCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGCATTTTGATTATGGTAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAATACATGGATGGGACTT</pcr_primer_p2>
		<pcr_amplicon_size>587</pcr_amplicon_size>
		<canonical_amplicon>TTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGARCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32408</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>23982</contig_pos>
        <strand>+</strand>
        <context>ggagcctagc[C/T]gtgtttgrgc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGC</left_flank>
        <right_flank>GTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCTCTCCAAAATGAGCGGGAAACTTATTTCTAGGGTAATTTTAGCGTTTCAAAACGATTTTTTGCGTTTTCAACGCTCAAAAATGAGTCTTAAGCTATGAAAAATGGTCCAGGACAATATTTTTTTTAATTCCAAAGATTTTTCAGGTGACTACCCATCGTGTTCACTGGAATTCATTTTTAGATCCGAATGGCCGCGTGCACTACTCTCAACGTTCCTTCCGAGCATTTTAATAGTGTCTTCTGTATTTTTCGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTTCTGAAAATTCCGATTTTCAGCTGTCTTCTCAACGCCCCTACACTGCAACTACTCTAATGGATCTCTGGTTATGCTCGAATTTTATTCATTCAGTTTTTTTGGTGTT</canonical>
            <polymorphic>CATCTCTCCAAAATGAGCGGGAAACTTATTTCTAGGGTAATTTTAGCGTTTCAAAACGATTTTTTGCGTTTTCAACGCTCAAAAATGAGTCTTAAGCTATGAAAAATGGTCCAGGACAATATTTTTTTTAATTCCAAAGATTTTTCAGGTGACTACCCATCGTGTTCACTGGAATTCATTTTTAGATCCGAATGGCCGCGTGCACTACTCTCAACGTTCCTTCCGAGCATTTTAATAGTGTCTTCTGTATTTTTCGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCYGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTTCTGAAAATTCCGATTTTCAGCTGTCTTCTCAACGCCCCTACACTGCAACTACTCTAATGGATCTCTGGTTATGCTCGAATTTTATTCATTCAGTTTTTTTGGTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>195 162 141 103 99 96 86 78 12 12 11 5</canonical_bands>
                <polymorphic_bands>195 162 141 103 99 96 86 78 16 12 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGCATTTTGATTATGGTAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAATACATGGATGGGACTT</pcr_primer_p2>
		<pcr_amplicon_size>587</pcr_amplicon_size>
		<canonical_amplicon>TTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCYGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32409</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>23990</contig_pos>
        <strand>+</strand>
        <context>gcygtgtttg[A/G]gctcattttr</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTG</left_flank>
        <right_flank>GCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAATGAGCGGGAAACTTATTTCTAGGGTAATTTTAGCGTTTCAAAACGATTTTTTGCGTTTTCAACGCTCAAAAATGAGTCTTAAGCTATGAAAAATGGTCCAGGACAATATTTTTTTTAATTCCAAAGATTTTTCAGGTGACTACCCATCGTGTTCACTGGAATTCATTTTTAGATCCGAATGGCCGCGTGCACTACTCTCAACGTTCCTTCCGAGCATTTTAATAGTGTCTTCTGTATTTTTCGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTTCTGAAAATTCCGATTTTCAGCTGTCTTCTCAACGCCCCTACACTGCAACTACTCTAATGGATCTCTGGTTATGCTCGAATTTTATTCATTCAGTTTTTTTGGTGTTAATCGATT</canonical>
            <polymorphic>CAAAATGAGCGGGAAACTTATTTCTAGGGTAATTTTAGCGTTTCAAAACGATTTTTTGCGTTTTCAACGCTCAAAAATGAGTCTTAAGCTATGAAAAATGGTCCAGGACAATATTTTTTTTAATTCCAAAGATTTTTCAGGTGACTACCCATCGTGTTCACTGGAATTCATTTTTAGATCCGAATGGCCGCGTGCACTACTCTCAACGTTCCTTCCGAGCATTTTAATAGTGTCTTCTGTATTTTTCGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGRGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTTCTGAAAATTCCGATTTTCAGCTGTCTTCTCAACGCCCCTACACTGCAACTACTCTAATGGATCTCTGGTTATGCTCGAATTTTATTCATTCAGTTTTTTTGGTGTTAATCGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>497 307 196</canonical_bands>
                <polymorphic_bands>804 196</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>195 162 141 103 99 94 88 78 12 12 11 5</canonical_bands>
                <polymorphic_bands>195 162 141 103 99 94 88 78 23 12 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGCATTTTGATTATGGTAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAATACATGGATGGGACTT</pcr_primer_p2>
		<pcr_amplicon_size>587</pcr_amplicon_size>
		<canonical_amplicon>TTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGRGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32410</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>24000</contig_pos>
        <strand>+</strand>
        <context>rgctcatttt[A/G]aagytcataa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTT</left_flank>
        <right_flank>AAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGAAACTTATTTCTAGGGTAATTTTAGCGTTTCAAAACGATTTTTTGCGTTTTCAACGCTCAAAAATGAGTCTTAAGCTATGAAAAATGGTCCAGGACAATATTTTTTTTAATTCCAAAGATTTTTCAGGTGACTACCCATCGTGTTCACTGGAATTCATTTTTAGATCCGAATGGCCGCGTGCACTACTCTCAACGTTCCTTCCGAGCATTTTAATAGTGTCTTCTGTATTTTTCGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTTCTGAAAATTCCGATTTTCAGCTGTCTTCTCAACGCCCCTACACTGCAACTACTCTAATGGATCTCTGGTTATGCTCGAATTTTATTCATTCAGTTTTTTTGGTGTTAATCGATTTAACACTGCC</canonical>
            <polymorphic>GGGAAACTTATTTCTAGGGTAATTTTAGCGTTTCAAAACGATTTTTTGCGTTTTCAACGCTCAAAAATGAGTCTTAAGCTATGAAAAATGGTCCAGGACAATATTTTTTTTAATTCCAAAGATTTTTCAGGTGACTACCCATCGTGTTCACTGGAATTCATTTTTAGATCCGAATGGCCGCGTGCACTACTCTCAACGTTCCTTCCGAGCATTTTAATAGTGTCTTCTGTATTTTTCGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTRAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTTCTGAAAATTCCGATTTTCAGCTGTCTTCTCAACGCCCCTACACTGCAACTACTCTAATGGATCTCTGGTTATGCTCGAATTTTATTCATTCAGTTTTTTTGGTGTTAATCGATTTAACACTGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 169 156 143 33</canonical_bands>
                <polymorphic_bands>532 169 156 143</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>284 169 143 138 104 74 36 33 10 9</canonical_bands>
                <polymorphic_bands>317 169 143 138 104 74 36 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGCATTTTGATTATGGTAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAATACATGGATGGGACTT</pcr_primer_p2>
		<pcr_amplicon_size>587</pcr_amplicon_size>
		<canonical_amplicon>TTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTRAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32411</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>24004</contig_pos>
        <strand></strand>
        <context>cattttraag[C/T]tcataacatg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAG</left_flank>
        <right_flank>TCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTTATTTCTAGGGTAATTTTAGCGTTTCAAAACGATTTTTTGCGTTTTCAACGCTCAAAAATGAGTCTTAAGCTATGAAAAATGGTCCAGGACAATATTTTTTTTAATTCCAAAGATTTTTCAGGTGACTACCCATCGTGTTCACTGGAATTCATTTTTAGATCCGAATGGCCGCGTGCACTACTCTCAACGTTCCTTCCGAGCATTTTAATAGTGTCTTCTGTATTTTTCGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTTCTGAAAATTCCGATTTTCAGCTGTCTTCTCAACGCCCCTACACTGCAACTACTCTAATGGATCTCTGGTTATGCTCGAATTTTATTCATTCAGTTTTTTTGGTGTTAATCGATTTAACACTGCCCGCT</canonical>
            <polymorphic>AACTTATTTCTAGGGTAATTTTAGCGTTTCAAAACGATTTTTTGCGTTTTCAACGCTCAAAAATGAGTCTTAAGCTATGAAAAATGGTCCAGGACAATATTTTTTTTAATTCCAAAGATTTTTCAGGTGACTACCCATCGTGTTCACTGGAATTCATTTTTAGATCCGAATGGCCGCGTGCACTACTCTCAACGTTCCTTCCGAGCATTTTAATAGTGTCTTCTGTATTTTTCGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGYTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTTCTGAAAATTCCGATTTTCAGCTGTCTTCTCAACGCCCCTACACTGCAACTACTCTAATGGATCTCTGGTTATGCTCGAATTTTATTCATTCAGTTTTTTTGGTGTTAATCGATTTAACACTGCCCGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>315 294 131 108 78 74</canonical_bands>
                <polymorphic_bands>446 294 108 78 74</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>195 162 141 108 103 99 78 74 12 12 11 5</canonical_bands>
                <polymorphic_bands>195 162 153 108 103 99 78 74 12 11 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGCATTTTGATTATGGTAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAATACATGGATGGGACTT</pcr_primer_p2>
		<pcr_amplicon_size>587</pcr_amplicon_size>
		<canonical_amplicon>TTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGYTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32412</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>24048</contig_pos>
        <strand></strand>
        <context>tttgagtttg[C/A]tcraaaactc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTG</left_flank>
        <right_flank>TCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTTTTCAACGCTCAAAAATGAGTCTTAAGCTATGAAAAATGGTCCAGGACAATATTTTTTTTAATTCCAAAGATTTTTCAGGTGACTACCCATCGTGTTCACTGGAATTCATTTTTAGATCCGAATGGCCGCGTGCACTACTCTCAACGTTCCTTCCGAGCATTTTAATAGTGTCTTCTGTATTTTTCGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTTCTGAAAATTCCGATTTTCAGCTGTCTTCTCAACGCCCCTACACTGCAACTACTCTAATGGATCTCTGGTTATGCTCGAATTTTATTCATTCAGTTTTTTTGGTGTTAATCGATTTAACACTGCCCGCTAGAAGAGTACGGTACACTTTGATGGTCCATGTGGATGAGGAGAA</canonical>
            <polymorphic>CGTTTTCAACGCTCAAAAATGAGTCTTAAGCTATGAAAAATGGTCCAGGACAATATTTTTTTTAATTCCAAAGATTTTTCAGGTGACTACCCATCGTGTTCACTGGAATTCATTTTTAGATCCGAATGGCCGCGTGCACTACTCTCAACGTTCCTTCCGAGCATTTTAATAGTGTCTTCTGTATTTTTCGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGMTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTTCTGAAAATTCCGATTTTCAGCTGTCTTCTCAACGCCCCTACACTGCAACTACTCTAATGGATCTCTGGTTATGCTCGAATTTTATTCATTCAGTTTTTTTGGTGTTAATCGATTTAACACTGCCCGCTAGAAGAGTACGGTACACTTTGATGGTCCATGTGGATGAGGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGCATTTTGATTATGGTAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAATACATGGATGGGACTT</pcr_primer_p2>
		<pcr_amplicon_size>587</pcr_amplicon_size>
		<canonical_amplicon>TTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGMTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32413</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>24051</contig_pos>
        <strand></strand>
        <context>gagtttgmtc[G/A]aaaactcacm</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTC</left_flank>
        <right_flank>AAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCAACGCTCAAAAATGAGTCTTAAGCTATGAAAAATGGTCCAGGACAATATTTTTTTTAATTCCAAAGATTTTTCAGGTGACTACCCATCGTGTTCACTGGAATTCATTTTTAGATCCGAATGGCCGCGTGCACTACTCTCAACGTTCCTTCCGAGCATTTTAATAGTGTCTTCTGTATTTTTCGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTTCTGAAAATTCCGATTTTCAGCTGTCTTCTCAACGCCCCTACACTGCAACTACTCTAATGGATCTCTGGTTATGCTCGAATTTTATTCATTCAGTTTTTTTGGTGTTAATCGATTTAACACTGCCCGCTAGAAGAGTACGGTACACTTTGATGGTCCATGTGGATGAGGAGAAGAA</canonical>
            <polymorphic>TTTCAACGCTCAAAAATGAGTCTTAAGCTATGAAAAATGGTCCAGGACAATATTTTTTTTAATTCCAAAGATTTTTCAGGTGACTACCCATCGTGTTCACTGGAATTCATTTTTAGATCCGAATGGCCGCGTGCACTACTCTCAACGTTCCTTCCGAGCATTTTAATAGTGTCTTCTGTATTTTTCGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCRAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTTCTGAAAATTCCGATTTTCAGCTGTCTTCTCAACGCCCCTACACTGCAACTACTCTAATGGATCTCTGGTTATGCTCGAATTTTATTCATTCAGTTTTTTTGGTGTTAATCGATTTAACACTGCCCGCTAGAAGAGTACGGTACACTTTGATGGTCCATGTGGATGAGGAGAAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 216 130 65 56 34</canonical_bands>
                <polymorphic_bands>555 216 130 65 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGCATTTTGATTATGGTAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAATACATGGATGGGACTT</pcr_primer_p2>
		<pcr_amplicon_size>587</pcr_amplicon_size>
		<canonical_amplicon>TTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCRAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32414</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>24061</contig_pos>
        <strand></strand>
        <context>raaaactcac[A/C]gagttacagt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCAC</left_flank>
        <right_flank>GAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAATGAGTCTTAAGCTATGAAAAATGGTCCAGGACAATATTTTTTTTAATTCCAAAGATTTTTCAGGTGACTACCCATCGTGTTCACTGGAATTCATTTTTAGATCCGAATGGCCGCGTGCACTACTCTCAACGTTCCTTCCGAGCATTTTAATAGTGTCTTCTGTATTTTTCGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTTCTGAAAATTCCGATTTTCAGCTGTCTTCTCAACGCCCCTACACTGCAACTACTCTAATGGATCTCTGGTTATGCTCGAATTTTATTCATTCAGTTTTTTTGGTGTTAATCGATTTAACACTGCCCGCTAGAAGAGTACGGTACACTTTGATGGTCCATGTGGATGAGGAGAAGAAACAGGCAAAT</canonical>
            <polymorphic>CAAAAATGAGTCTTAAGCTATGAAAAATGGTCCAGGACAATATTTTTTTTAATTCCAAAGATTTTTCAGGTGACTACCCATCGTGTTCACTGGAATTCATTTTTAGATCCGAATGGCCGCGTGCACTACTCTCAACGTTCCTTCCGAGCATTTTAATAGTGTCTTCTGTATTTTTCGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACMGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTTCTGAAAATTCCGATTTTCAGCTGTCTTCTCAACGCCCCTACACTGCAACTACTCTAATGGATCTCTGGTTATGCTCGAATTTTATTCATTCAGTTTTTTTGGTGTTAATCGATTTAACACTGCCCGCTAGAAGAGTACGGTACACTTTGATGGTCCATGTGGATGAGGAGAAGAAACAGGCAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGCATTTTGATTATGGTAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAATACATGGATGGGACTT</pcr_primer_p2>
		<pcr_amplicon_size>587</pcr_amplicon_size>
		<canonical_amplicon>TTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACMGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32415</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>24182</contig_pos>
        <strand></strand>
        <context>atttaaatcc[T/A]gcgtaatgat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCC</left_flank>
        <right_flank>GCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAAC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCACTACTCTCAACGTTCCTTCCGAGCATTTTAATAGTGTCTTCTGTATTTTTCGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTTCTGAAAATTCCGATTTTCAGCTGTCTTCTCAACGCCCCTACACTGCAACTACTCTAATGGATCTCTGGTTATGCTCGAATTTTATTCATTCAGTTTTTTTGGTGTTAATCGATTTAACACTGCCCGCTAGAAGAGTACGGTACACTTTGATGGTCCATGTGGATGAGGAGAAGAAACAGGCAAATCCTGTCAAAATTATGACTACTTGTGGGTTTTTTGGCTGAAAATTGATTGAAAATTCGCTTTTTCGGGTCTTAAAAGTCATTTTTTGCTTTTGAAAATGTGAAAAATGAACTCAAAACATAA</canonical>
            <polymorphic>TGCACTACTCTCAACGTTCCTTCCGAGCATTTTAATAGTGTCTTCTGTATTTTTCGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCWGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTTCTGAAAATTCCGATTTTCAGCTGTCTTCTCAACGCCCCTACACTGCAACTACTCTAATGGATCTCTGGTTATGCTCGAATTTTATTCATTCAGTTTTTTTGGTGTTAATCGATTTAACACTGCCCGCTAGAAGAGTACGGTACACTTTGATGGTCCATGTGGATGAGGAGAAGAAACAGGCAAATCCTGTCAAAATTATGACTACTTGTGGGTTTTTTGGCTGAAAATTGATTGAAAATTCGCTTTTTCGGGTCTTAAAAGTCATTTTTTGCTTTTGAAAATGTGAAAAATGAACTCAAAACATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGCATTTTGATTATGGTAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAATACATGGATGGGACTT</pcr_primer_p2>
		<pcr_amplicon_size>587</pcr_amplicon_size>
		<canonical_amplicon>TTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCWGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32416</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>24236</contig_pos>
        <strand></strand>
        <context>cgaaaacgtt[C/G]gattactgta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTT</left_flank>
        <right_flank>GATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTTCTGAAAATTCCGATTTTCAGCTGTCTTCTCAACGCCCCTACACTGCAACTACTCTAATGGATCTCTGGTTATGCTCGAATTTTATTCATTCAGTTTTTTTGGTGTTAATCGATTTAACACTGCCCGCTAGAAGAGTACGGTACACTTTGATGGTCCATGTGGATGAGGAGAAGAAACAGGCAAATCCTGTCAAAATTATGACTACTTGTGGGTTTTTTGGCTGAAAATTGATTGAAAATTCGCTTTTTCGGGTCTTAAAAGTCATTTTTTGCTTTTGAAAATGTGAAAAATGAACTCAAAACATAAAAATTACCCTGAAAATTATGTTTCTGACAACTTTTGGAACGCGGCCTAGAAACC</canonical>
            <polymorphic>CGCTCAATGGAAACGGCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTSGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTTCTGAAAATTCCGATTTTCAGCTGTCTTCTCAACGCCCCTACACTGCAACTACTCTAATGGATCTCTGGTTATGCTCGAATTTTATTCATTCAGTTTTTTTGGTGTTAATCGATTTAACACTGCCCGCTAGAAGAGTACGGTACACTTTGATGGTCCATGTGGATGAGGAGAAGAAACAGGCAAATCCTGTCAAAATTATGACTACTTGTGGGTTTTTTGGCTGAAAATTGATTGAAAATTCGCTTTTTCGGGTCTTAAAAGTCATTTTTTGCTTTTGAAAATGTGAAAAATGAACTCAAAACATAAAAATTACCCTGAAAATTATGTTTCTGACAACTTTTGGAACGCGGCCTAGAAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>505 333 162</canonical_bands>
                <polymorphic_bands>838 162</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>314 250 216 130 56 34</canonical_bands>
                <polymorphic_bands>346 314 250 56 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGCATTTTGATTATGGTAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAATACATGGATGGGACTT</pcr_primer_p2>
		<pcr_amplicon_size>587</pcr_amplicon_size>
		<canonical_amplicon>TTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTSGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32417</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>24251</contig_pos>
        <strand></strand>
        <context>actgtagttg[A/G]ttcttcaaac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTG</left_flank>
        <right_flank>TTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTTCTGAAAATTCCGATTTTCAGCTGTCTTCTCAACGCCCCTACACTGCAACTACTCTAATGGATCTCTGGTTATGCTCGAATTTTATTCATTCAGTTTTTTTGGTGTTAATCGATTTAACACTGCCCGCTAGAAGAGTACGGTACACTTTGATGGTCCATGTGGATGAGGAGAAGAAACAGGCAAATCCTGTCAAAATTATGACTACTTGTGGGTTTTTTGGCTGAAAATTGATTGAAAATTCGCTTTTTCGGGTCTTAAAAGTCATTTTTTGCTTTTGAAAATGTGAAAAATGAACTCAAAACATAAAAATTACCCTGAAAATTATGTTTCTGACAACTTTTGGAACGCGGCCTAGAAACCCAAAAATTTTGGATT</canonical>
            <polymorphic>GCGGAAAATTCAAATTTTAGTCTCCCTGGCGGCAATGGTTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGRTTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTTCTGAAAATTCCGATTTTCAGCTGTCTTCTCAACGCCCCTACACTGCAACTACTCTAATGGATCTCTGGTTATGCTCGAATTTTATTCATTCAGTTTTTTTGGTGTTAATCGATTTAACACTGCCCGCTAGAAGAGTACGGTACACTTTGATGGTCCATGTGGATGAGGAGAAGAAACAGGCAAATCCTGTCAAAATTATGACTACTTGTGGGTTTTTTGGCTGAAAATTGATTGAAAATTCGCTTTTTCGGGTCTTAAAAGTCATTTTTTGCTTTTGAAAATGTGAAAAATGAACTCAAAACATAAAAATTACCCTGAAAATTATGTTTCTGACAACTTTTGGAACGCGGCCTAGAAACCCAAAAATTTTGGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>501 433 66</canonical_bands>
                <polymorphic_bands>934 66</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGCATTTTGATTATGGTAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAATACATGGATGGGACTT</pcr_primer_p2>
		<pcr_amplicon_size>587</pcr_amplicon_size>
		<canonical_amplicon>TTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGRTTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32418</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>24290</contig_pos>
        <strand></strand>
        <context>tttggttcaa[A/G]tatagtcgtg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAA</left_flank>
        <right_flank>TATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAAATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTTCTGAAAATTCCGATTTTCAGCTGTCTTCTCAACGCCCCTACACTGCAACTACTCTAATGGATCTCTGGTTATGCTCGAATTTTATTCATTCAGTTTTTTTGGTGTTAATCGATTTAACACTGCCCGCTAGAAGAGTACGGTACACTTTGATGGTCCATGTGGATGAGGAGAAGAAACAGGCAAATCCTGTCAAAATTATGACTACTTGTGGGTTTTTTGGCTGAAAATTGATTGAAAATTCGCTTTTTCGGGTCTTAAAAGTCATTTTTTGCTTTTGAAAATGTGAAAAATGAACTCAAAACATAAAAATTACCCTGAAAATTATGTTTCTGACAACTTTTGGAACGCGGCCTAGAAACCCAAAAATTTTGGATTTCTAGGCCACCTTCCCAAAATGGACGGAAAACTCATTTC</canonical>
            <polymorphic>TGGCATTTTGATTATGGTAGGGGGCGGAGTCTATTTTTTTTTCATTTTGAAAATGTGAAATTTGAATTCAGTGCGTTGGGAGCTTCAAAATGAGTATAATCATGAATAGGTTCCGTTCACTTTGATTTTACGGCGCGTCGCGGTCGTGCGTCGCGTGACAGAGGGAAACTTCAAAGTGAGCGGAGCCTAGCCGTGTTTGGGCTCATTTTAAAGCTCATAACATGCCAAATCTAGTGTTTTTTAAATTTTTGAGTTTGCTCGAAAACTCACAGAGTTACAGTACTTTTTGCATTTTTGGGTCCCACCACGAAAATTCGAAAATTTCAACACTTTTCAAATATAGTCGTGTTTAGGCTTATTTTGAAGCGTAAGACATGCTAAATTTAAATCCTGCGTAATGATTGCTTCAAAATGAACCCAAATTTGACTAGGATCCGAAAACGTTCGATTACTGTAGTTGATTCTTCAAACTACCGTAACCCCGCTAGTTTTGGTTCAARTATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTTCTGAAAATTCCGATTTTCAGCTGTCTTCTCAACGCCCCTACACTGCAACTACTCTAATGGATCTCTGGTTATGCTCGAATTTTATTCATTCAGTTTTTTTGGTGTTAATCGATTTAACACTGCCCGCTAGAAGAGTACGGTACACTTTGATGGTCCATGTGGATGAGGAGAAGAAACAGGCAAATCCTGTCAAAATTATGACTACTTGTGGGTTTTTTGGCTGAAAATTGATTGAAAATTCGCTTTTTCGGGTCTTAAAAGTCATTTTTTGCTTTTGAAAATGTGAAAAATGAACTCAAAACATAAAAATTACCCTGAAAATTATGTTTCTGACAACTTTTGGAACGCGGCCTAGAAACCCAAAAATTTTGGATTTCTAGGCCACCTTCCCAAAATGGACGGAAAACTCATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGCATTTTGATTATGGTAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAATACATGGATGGGACTT</pcr_primer_p2>
		<pcr_amplicon_size>587</pcr_amplicon_size>
		<canonical_amplicon>AATATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>ARTATAGTCGTGTTTAGGCTCATTTTGAAGCTCTGAACTTACCAAATTCAAATTTTAAAATTTCAAAAAGTCCCATCCATGTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32419</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>29210</contig_pos>
        <strand>+</strand>
        <context>ACAATCCAAT[C/T]CTCTCCTCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTCCAAAAATTCGAACAAAGTTATCAATTTTTGTAATACAATCCAAT</left_flank>
        <right_flank>CTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGGGGGGGGGGACACTAGTCGTGTTTAGGCTCATTTTGAAGCTTATTTAATTTTAGATTGATTTGTATACTTTTCATAAAATTTGGACCATAATTAACGGGATTACGGGAGTTTCAAGAATCGAGACTACAGTAATCCAAAGTTTACGAATTCTAGTCAATTTTGGGCTTATTTCCAAGCAATATTTAGGTTGAGTTTGAATTAAGGATGTATTTTGCTTCAAAATGAACCCCAACACGACTAGGCTCCGCCCATATTGAAATTTCCATGAGACACGCGACGCACGACCGCGACGCGCCAGAAAAAATAAAAATAACCGGAATGTAGTCGTGCTTGGGCTCATTTTGAAGCTCATTTAATTCCAGATCGATTTGTATAGTTTTTGTCAAATTTAGACAAAAAGTAGCCAAGATACGGTAAAAAGAAATGAGACTATTTATTAATTGCAAATTTCCAAAAATTCGAACAAAGTTATCAATTTTTGTAATACAATCCAATCCTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGGTGGAGCGGCGATTTGAACTGCAACCGGAAGCCCATCACAATTCTTCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATTTCCTACCTTAACCTTTC</canonical>
            <polymorphic>GGGGGGGGGGGGACACTAGTCGTGTTTAGGCTCATTTTGAAGCTTATTTAATTTTAGATTGATTTGTATACTTTTCATAAAATTTGGACCATAATTAACGGGATTACGGGAGTTTCAAGAATCGAGACTACAGTAATCCAAAGTTTACGAATTCTAGTCAATTTTGGGCTTATTTCCAAGCAATATTTAGGTTGAGTTTGAATTAAGGATGTATTTTGCTTCAAAATGAACCCCAACACGACTAGGCTCCGCCCATATTGAAATTTCCATGAGACACGCGACGCACGACCGCGACGCGCCAGAAAAAATAAAAATAACCGGAATGTAGTCGTGCTTGGGCTCATTTTGAAGCTCATTTAATTCCAGATCGATTTGTATAGTTTTTGTCAAATTTAGACAAAAAGTAGCCAAGATACGGTAAAAAGAAATGAGACTATTTATTAATTGCAAATTTCCAAAAATTCGAACAAAGTTATCAATTTTTGTAATACAATCCAATYCTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGGTGGAGCGGCGATTTGAACTGCAACCGGAAGCCCATCACAATTCTTCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATTTCCTACCTTAACCTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCCAAAAATTCGAACAA</pcr_primer_p1>
		<pcr_primer_p2>ACCGTAAAATCGTGTCAGAA</pcr_primer_p2>
		<pcr_amplicon_size>168</pcr_amplicon_size>
		<canonical_amplicon>ATTTCCAAAAATTCGAACAAAGTTATCAATTTTTGTAATACAATCCAATCCTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGGTGGAGCGGCGATTTGAACTGCAACCGGAAGCCCATCACAATTCTTCGATTCTGACACGATTTTACGGT</canonical_amplicon>
		<polymorphic_amplicon>ATTTCCAAAAATTCGAACAAAGTTATCAATTTTTGTAATACAATCCAATYCTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGGTGGAGCGGCGATTTGAACTGCAACCGGAAGCCCATCACAATTCTTCGATTCTGACACGATTTTACGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32420</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>29366</contig_pos>
        <strand>+</strand>
        <context>AGGGTTTTTT[A/C]MWAAAATATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTT</left_flank>
        <right_flank>AAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCAATTTTGGGCTTATTTCCAAGCAATATTTAGGTTGAGTTTGAATTAAGGATGTATTTTGCTTCAAAATGAACCCCAACACGACTAGGCTCCGCCCATATTGAAATTTCCATGAGACACGCGACGCACGACCGCGACGCGCCAGAAAAAATAAAAATAACCGGAATGTAGTCGTGCTTGGGCTCATTTTGAAGCTCATTTAATTCCAGATCGATTTGTATAGTTTTTGTCAAATTTAGACAAAAAGTAGCCAAGATACGGTAAAAAGAAATGAGACTATTTATTAATTGCAAATTTCCAAAAATTCGAACAAAGTTATCAATTTTTGTAATACAATCCAATCCTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGGTGGAGCGGCGATTTGAACTGCAACCGGAAGCCCATCACAATTCTTCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATTTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAGTAACCGGTACAGTACCCGCCGCGAAATCAATCAAATTATAGAGTGCCGTGTAGCTGGTTGCGGACATAATTTTGTTGGGAACCCCGTGGTGTGGGGGTGGACAACCGAACGATGGACACACTA</canonical>
            <polymorphic>GTCAATTTTGGGCTTATTTCCAAGCAATATTTAGGTTGAGTTTGAATTAAGGATGTATTTTGCTTCAAAATGAACCCCAACACGACTAGGCTCCGCCCATATTGAAATTTCCATGAGACACGCGACGCACGACCGCGACGCGCCAGAAAAAATAAAAATAACCGGAATGTAGTCGTGCTTGGGCTCATTTTGAAGCTCATTTAATTCCAGATCGATTTGTATAGTTTTTGTCAAATTTAGACAAAAAGTAGCCAAGATACGGTAAAAAGAAATGAGACTATTTATTAATTGCAAATTTCCAAAAATTCGAACAAAGTTATCAATTTTTGTAATACAATCCAATCCTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGGTGGAGCGGCGATTTGAACTGCAACCGGAAGCCCATCACAATTCTTCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTMAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATTTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAGTAACCGGTACAGTACCCGCCGCGAAATCAATCAAATTATAGAGTGCCGTGTAGCTGGTTGCGGACATAATTTTGTTGGGAACCCCGTGGTGTGGGGGTGGACAACCGAACGATGGACACACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 281 220</canonical_bands>
                <polymorphic_bands>719 281</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>220 213 165 154 84 60 47 27 21 9</canonical_bands>
                <polymorphic_bands>433 165 154 84 60 47 27 21 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGATTCTGACACGATTTTAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCCAAGAAATATCCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>363</pcr_amplicon_size>
		<canonical_amplicon>TCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTMAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32421</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>29367</contig_pos>
        <strand>+</strand>
        <context>GGGTTTTTTM[A/C]WAAAATATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTA</left_flank>
        <right_flank>AAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGAC</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAATTTTGGGCTTATTTCCAAGCAATATTTAGGTTGAGTTTGAATTAAGGATGTATTTTGCTTCAAAATGAACCCCAACACGACTAGGCTCCGCCCATATTGAAATTTCCATGAGACACGCGACGCACGACCGCGACGCGCCAGAAAAAATAAAAATAACCGGAATGTAGTCGTGCTTGGGCTCATTTTGAAGCTCATTTAATTCCAGATCGATTTGTATAGTTTTTGTCAAATTTAGACAAAAAGTAGCCAAGATACGGTAAAAAGAAATGAGACTATTTATTAATTGCAAATTTCCAAAAATTCGAACAAAGTTATCAATTTTTGTAATACAATCCAATCCTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGGTGGAGCGGCGATTTGAACTGCAACCGGAAGCCCATCACAATTCTTCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATTTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAGTAACCGGTACAGTACCCGCCGCGAAATCAATCAAATTATAGAGTGCCGTGTAGCTGGTTGCGGACATAATTTTGTTGGGAACCCCGTGGTGTGGGGGTGGACAACCGAACGATGGACACACTAT</canonical>
            <polymorphic>TCAATTTTGGGCTTATTTCCAAGCAATATTTAGGTTGAGTTTGAATTAAGGATGTATTTTGCTTCAAAATGAACCCCAACACGACTAGGCTCCGCCCATATTGAAATTTCCATGAGACACGCGACGCACGACCGCGACGCGCCAGAAAAAATAAAAATAACCGGAATGTAGTCGTGCTTGGGCTCATTTTGAAGCTCATTTAATTCCAGATCGATTTGTATAGTTTTTGTCAAATTTAGACAAAAAGTAGCCAAGATACGGTAAAAAGAAATGAGACTATTTATTAATTGCAAATTTCCAAAAATTCGAACAAAGTTATCAATTTTTGTAATACAATCCAATCCTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGGTGGAGCGGCGATTTGAACTGCAACCGGAAGCCCATCACAATTCTTCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAMAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATTTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAGTAACCGGTACAGTACCCGCCGCGAAATCAATCAAATTATAGAGTGCCGTGTAGCTGGTTGCGGACATAATTTTGTTGGGAACCCCGTGGTGTGGGGGTGGACAACCGAACGATGGACACACTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>498 282 220</canonical_bands>
                <polymorphic_bands>718 282</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>220 213 166 154 84 60 46 27 21 9</canonical_bands>
                <polymorphic_bands>433 166 154 84 60 46 27 21 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGATTCTGACACGATTTTAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCCAAGAAATATCCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>363</pcr_amplicon_size>
		<canonical_amplicon>TCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAMAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32422</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>29368</contig_pos>
        <strand>+</strand>
        <context>GGTTTTTTMM[A/T]AAAATATTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAA</left_flank>
        <right_flank>AAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACG</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATTTTGGGCTTATTTCCAAGCAATATTTAGGTTGAGTTTGAATTAAGGATGTATTTTGCTTCAAAATGAACCCCAACACGACTAGGCTCCGCCCATATTGAAATTTCCATGAGACACGCGACGCACGACCGCGACGCGCCAGAAAAAATAAAAATAACCGGAATGTAGTCGTGCTTGGGCTCATTTTGAAGCTCATTTAATTCCAGATCGATTTGTATAGTTTTTGTCAAATTTAGACAAAAAGTAGCCAAGATACGGTAAAAAGAAATGAGACTATTTATTAATTGCAAATTTCCAAAAATTCGAACAAAGTTATCAATTTTTGTAATACAATCCAATCCTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGGTGGAGCGGCGATTTGAACTGCAACCGGAAGCCCATCACAATTCTTCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATTTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAGTAACCGGTACAGTACCCGCCGCGAAATCAATCAAATTATAGAGTGCCGTGTAGCTGGTTGCGGACATAATTTTGTTGGGAACCCCGTGGTGTGGGGGTGGACAACCGAACGATGGACACACTATC</canonical>
            <polymorphic>CAATTTTGGGCTTATTTCCAAGCAATATTTAGGTTGAGTTTGAATTAAGGATGTATTTTGCTTCAAAATGAACCCCAACACGACTAGGCTCCGCCCATATTGAAATTTCCATGAGACACGCGACGCACGACCGCGACGCGCCAGAAAAAATAAAAATAACCGGAATGTAGTCGTGCTTGGGCTCATTTTGAAGCTCATTTAATTCCAGATCGATTTGTATAGTTTTTGTCAAATTTAGACAAAAAGTAGCCAAGATACGGTAAAAAGAAATGAGACTATTTATTAATTGCAAATTTCCAAAAATTCGAACAAAGTTATCAATTTTTGTAATACAATCCAATCCTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGGTGGAGCGGCGATTTGAACTGCAACCGGAAGCCCATCACAATTCTTCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAWAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATTTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAGTAACCGGTACAGTACCCGCCGCGAAATCAATCAAATTATAGAGTGCCGTGTAGCTGGTTGCGGACATAATTTTGTTGGGAACCCCGTGGTGTGGGGGTGGACAACCGAACGATGGACACACTATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>497 283 220</canonical_bands>
                <polymorphic_bands>717 283</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGATTCTGACACGATTTTAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCCAAGAAATATCCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>363</pcr_amplicon_size>
		<canonical_amplicon>TCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAWAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32423</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>29448</contig_pos>
        <strand></strand>
        <context>ctccaacacg[A/G]ctagrctccg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACG</left_flank>
        <right_flank>CTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACTAGGCTCCGCCCATATTGAAATTTCCATGAGACACGCGACGCACGACCGCGACGCGCCAGAAAAAATAAAAATAACCGGAATGTAGTCGTGCTTGGGCTCATTTTGAAGCTCATTTAATTCCAGATCGATTTGTATAGTTTTTGTCAAATTTAGACAAAAAGTAGCCAAGATACGGTAAAAAGAAATGAGACTATTTATTAATTGCAAATTTCCAAAAATTCGAACAAAGTTATCAATTTTTGTAATACAATCCAATCCTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGGTGGAGCGGCGATTTGAACTGCAACCGGAAGCCCATCACAATTCTTCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATTTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAGTAACCGGTACAGTACCCGCCGCGAAATCAATCAAATTATAGAGTGCCGTGTAGCTGGTTGCGGACATAATTTTGTTGGGAACCCCGTGGTGTGGGGGTGGACAACCGAACGATGGACACACTATCGCGTCGAGACCCTTCGCACGCATCGCCATGACGAATTCATGACGGTAGTCCTCGATTTTCTCGTGCATTAGACGCATTTC</canonical>
            <polymorphic>CGACTAGGCTCCGCCCATATTGAAATTTCCATGAGACACGCGACGCACGACCGCGACGCGCCAGAAAAAATAAAAATAACCGGAATGTAGTCGTGCTTGGGCTCATTTTGAAGCTCATTTAATTCCAGATCGATTTGTATAGTTTTTGTCAAATTTAGACAAAAAGTAGCCAAGATACGGTAAAAAGAAATGAGACTATTTATTAATTGCAAATTTCCAAAAATTCGAACAAAGTTATCAATTTTTGTAATACAATCCAATCCTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGGTGGAGCGGCGATTTGAACTGCAACCGGAAGCCCATCACAATTCTTCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGRCTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATTTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAGTAACCGGTACAGTACCCGCCGCGAAATCAATCAAATTATAGAGTGCCGTGTAGCTGGTTGCGGACATAATTTTGTTGGGAACCCCGTGGTGTGGGGGTGGACAACCGAACGATGGACACACTATCGCGTCGAGACCCTTCGCACGCATCGCCATGACGAATTCATGACGGTAGTCCTCGATTTTCTCGTGCATTAGACGCATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGATTCTGACACGATTTTAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCCAAGAAATATCCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>363</pcr_amplicon_size>
		<canonical_amplicon>TCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGRCTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32424</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>29453</contig_pos>
        <strand></strand>
        <context>acacgrctag[G/A]ctccgcccat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAG</left_flank>
        <right_flank>CTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGCTCCGCCCATATTGAAATTTCCATGAGACACGCGACGCACGACCGCGACGCGCCAGAAAAAATAAAAATAACCGGAATGTAGTCGTGCTTGGGCTCATTTTGAAGCTCATTTAATTCCAGATCGATTTGTATAGTTTTTGTCAAATTTAGACAAAAAGTAGCCAAGATACGGTAAAAAGAAATGAGACTATTTATTAATTGCAAATTTCCAAAAATTCGAACAAAGTTATCAATTTTTGTAATACAATCCAATCCTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGGTGGAGCGGCGATTTGAACTGCAACCGGAAGCCCATCACAATTCTTCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATTTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAGTAACCGGTACAGTACCCGCCGCGAAATCAATCAAATTATAGAGTGCCGTGTAGCTGGTTGCGGACATAATTTTGTTGGGAACCCCGTGGTGTGGGGGTGGACAACCGAACGATGGACACACTATCGCGTCGAGACCCTTCGCACGCATCGCCATGACGAATTCATGACGGTAGTCCTCGATTTTCTCGTGCATTAGACGCATTTCTGGAA</canonical>
            <polymorphic>AGGCTCCGCCCATATTGAAATTTCCATGAGACACGCGACGCACGACCGCGACGCGCCAGAAAAAATAAAAATAACCGGAATGTAGTCGTGCTTGGGCTCATTTTGAAGCTCATTTAATTCCAGATCGATTTGTATAGTTTTTGTCAAATTTAGACAAAAAGTAGCCAAGATACGGTAAAAAGAAATGAGACTATTTATTAATTGCAAATTTCCAAAAATTCGAACAAAGTTATCAATTTTTGTAATACAATCCAATCCTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGGTGGAGCGGCGATTTGAACTGCAACCGGAAGCCCATCACAATTCTTCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGRCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATTTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAGTAACCGGTACAGTACCCGCCGCGAAATCAATCAAATTATAGAGTGCCGTGTAGCTGGTTGCGGACATAATTTTGTTGGGAACCCCGTGGTGTGGGGGTGGACAACCGAACGATGGACACACTATCGCGTCGAGACCCTTCGCACGCATCGCCATGACGAATTCATGACGGTAGTCCTCGATTTTCTCGTGCATTAGACGCATTTCTGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>371 294 130 126 75 4</canonical_bands>
                <polymorphic_bands>371 294 201 130 4</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>250 173 157 99 93 77 56 36 16 16 12 12 3</canonical_bands>
                <polymorphic_bands>250 173 157 99 93 93 56 36 16 12 12 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGATTCTGACACGATTTTAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCCAAGAAATATCCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>363</pcr_amplicon_size>
		<canonical_amplicon>TCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGRCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32425</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>29482</contig_pos>
        <strand>+</strand>
        <context>ttcagacgcg[C/T]cgcggtcrtg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCG</left_flank>
        <right_flank>CGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACACGCGACGCACGACCGCGACGCGCCAGAAAAAATAAAAATAACCGGAATGTAGTCGTGCTTGGGCTCATTTTGAAGCTCATTTAATTCCAGATCGATTTGTATAGTTTTTGTCAAATTTAGACAAAAAGTAGCCAAGATACGGTAAAAAGAAATGAGACTATTTATTAATTGCAAATTTCCAAAAATTCGAACAAAGTTATCAATTTTTGTAATACAATCCAATCCTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGGTGGAGCGGCGATTTGAACTGCAACCGGAAGCCCATCACAATTCTTCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATTTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAGTAACCGGTACAGTACCCGCCGCGAAATCAATCAAATTATAGAGTGCCGTGTAGCTGGTTGCGGACATAATTTTGTTGGGAACCCCGTGGTGTGGGGGTGGACAACCGAACGATGGACACACTATCGCGTCGAGACCCTTCGCACGCATCGCCATGACGAATTCATGACGGTAGTCCTCGATTTTCTCGTGCATTAGACGCATTTCTGGAAGATTCTTGATTTTTTGGAATTTTCTAAGC</canonical>
            <polymorphic>GACACGCGACGCACGACCGCGACGCGCCAGAAAAAATAAAAATAACCGGAATGTAGTCGTGCTTGGGCTCATTTTGAAGCTCATTTAATTCCAGATCGATTTGTATAGTTTTTGTCAAATTTAGACAAAAAGTAGCCAAGATACGGTAAAAAGAAATGAGACTATTTATTAATTGCAAATTTCCAAAAATTCGAACAAAGTTATCAATTTTTGTAATACAATCCAATCCTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGGTGGAGCGGCGATTTGAACTGCAACCGGAAGCCCATCACAATTCTTCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGYCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATTTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAGTAACCGGTACAGTACCCGCCGCGAAATCAATCAAATTATAGAGTGCCGTGTAGCTGGTTGCGGACATAATTTTGTTGGGAACCCCGTGGTGTGGGGGTGGACAACCGAACGATGGACACACTATCGCGTCGAGACCCTTCGCACGCATCGCCATGACGAATTCATGACGGTAGTCCTCGATTTTCTCGTGCATTAGACGCATTTCTGGAAGATTCTTGATTTTTTGGAATTTTCTAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>457 235 220 42 26 17 3</canonical_bands>
                <polymorphic_bands>457 235 220 68 17 3</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 473 26</canonical_bands>
                <polymorphic_bands>974 26</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>356 345 155 144</canonical_bands>
                <polymorphic_bands>489 356 155</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 345 155</canonical_bands>
                <polymorphic_bands>845 155</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>286 280 218 216</canonical_bands>
                <polymorphic_bands>496 286 218</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGCGG</site>
                <isoschizomers>
                    <enzyme>Cfr42I</enzyme>
                    <enzyme>KspI</enzyme>
                    <enzyme>SacII</enzyme>
                    <enzyme>Sfr303I</enzyme>
                    <enzyme>SgrBI</enzyme>
                    <enzyme>SstII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>286 280 218 216</canonical_bands>
                <polymorphic_bands>496 286 218</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGATTCTGACACGATTTTAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCCAAGAAATATCCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>363</pcr_amplicon_size>
		<canonical_amplicon>TCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGYCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32426</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>29490</contig_pos>
        <strand>+</strand>
        <context>cgycgcggtc[A/G]tgcgtcgcgt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTC</left_flank>
        <right_flank>TGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGCACGACCGCGACGCGCCAGAAAAAATAAAAATAACCGGAATGTAGTCGTGCTTGGGCTCATTTTGAAGCTCATTTAATTCCAGATCGATTTGTATAGTTTTTGTCAAATTTAGACAAAAAGTAGCCAAGATACGGTAAAAAGAAATGAGACTATTTATTAATTGCAAATTTCCAAAAATTCGAACAAAGTTATCAATTTTTGTAATACAATCCAATCCTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGGTGGAGCGGCGATTTGAACTGCAACCGGAAGCCCATCACAATTCTTCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATTTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAGTAACCGGTACAGTACCCGCCGCGAAATCAATCAAATTATAGAGTGCCGTGTAGCTGGTTGCGGACATAATTTTGTTGGGAACCCCGTGGTGTGGGGGTGGACAACCGAACGATGGACACACTATCGCGTCGAGACCCTTCGCACGCATCGCCATGACGAATTCATGACGGTAGTCCTCGATTTTCTCGTGCATTAGACGCATTTCTGGAAGATTCTTGATTTTTTGGAATTTTCTAAGCTTTAAACG</canonical>
            <polymorphic>ACGCACGACCGCGACGCGCCAGAAAAAATAAAAATAACCGGAATGTAGTCGTGCTTGGGCTCATTTTGAAGCTCATTTAATTCCAGATCGATTTGTATAGTTTTTGTCAAATTTAGACAAAAAGTAGCCAAGATACGGTAAAAAGAAATGAGACTATTTATTAATTGCAAATTTCCAAAAATTCGAACAAAGTTATCAATTTTTGTAATACAATCCAATCCTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGGTGGAGCGGCGATTTGAACTGCAACCGGAAGCCCATCACAATTCTTCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCRTGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATTTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAGTAACCGGTACAGTACCCGCCGCGAAATCAATCAAATTATAGAGTGCCGTGTAGCTGGTTGCGGACATAATTTTGTTGGGAACCCCGTGGTGTGGGGGTGGACAACCGAACGATGGACACACTATCGCGTCGAGACCCTTCGCACGCATCGCCATGACGAATTCATGACGGTAGTCCTCGATTTTCTCGTGCATTAGACGCATTTCTGGAAGATTCTTGATTTTTTGGAATTTTCTAAGCTTTAAACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>499 406 84 11</canonical_bands>
                <polymorphic_bands>905 84 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGATTCTGACACGATTTTAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCCAAGAAATATCCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>363</pcr_amplicon_size>
		<canonical_amplicon>TCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCRTGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32427</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>29513</contig_pos>
        <strand>+</strand>
        <context>ctaggacgaa[A/T]yttcaaagtg</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAA</left_flank>
        <right_flank>TTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATAAAAATAACCGGAATGTAGTCGTGCTTGGGCTCATTTTGAAGCTCATTTAATTCCAGATCGATTTGTATAGTTTTTGTCAAATTTAGACAAAAAGTAGCCAAGATACGGTAAAAAGAAATGAGACTATTTATTAATTGCAAATTTCCAAAAATTCGAACAAAGTTATCAATTTTTGTAATACAATCCAATCCTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGGTGGAGCGGCGATTTGAACTGCAACCGGAAGCCCATCACAATTCTTCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATTTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAGTAACCGGTACAGTACCCGCCGCGAAATCAATCAAATTATAGAGTGCCGTGTAGCTGGTTGCGGACATAATTTTGTTGGGAACCCCGTGGTGTGGGGGTGGACAACCGAACGATGGACACACTATCGCGTCGAGACCCTTCGCACGCATCGCCATGACGAATTCATGACGGTAGTCCTCGATTTTCTCGTGCATTAGACGCATTTCTGGAAGATTCTTGATTTTTTGGAATTTTCTAAGCTTTAAACGTGTTAAAAACTTGTCAAAACAGT</canonical>
            <polymorphic>AAAAATAAAAATAACCGGAATGTAGTCGTGCTTGGGCTCATTTTGAAGCTCATTTAATTCCAGATCGATTTGTATAGTTTTTGTCAAATTTAGACAAAAAGTAGCCAAGATACGGTAAAAAGAAATGAGACTATTTATTAATTGCAAATTTCCAAAAATTCGAACAAAGTTATCAATTTTTGTAATACAATCCAATCCTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGGTGGAGCGGCGATTTGAACTGCAACCGGAAGCCCATCACAATTCTTCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAAWTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATTTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAGTAACCGGTACAGTACCCGCCGCGAAATCAATCAAATTATAGAGTGCCGTGTAGCTGGTTGCGGACATAATTTTGTTGGGAACCCCGTGGTGTGGGGGTGGACAACCGAACGATGGACACACTATCGCGTCGAGACCCTTCGCACGCATCGCCATGACGAATTCATGACGGTAGTCCTCGATTTTCTCGTGCATTAGACGCATTTCTGGAAGATTCTTGATTTTTTGGAATTTTCTAAGCTTTAAACGTGTTAAAAACTTGTCAAAACAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>212 180 119 86 69 60 55 50 43 42 28 24 13 10 9</canonical_bands>
                <polymorphic_bands>212 180 119 97 86 69 60 50 43 28 24 13 10 9</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>111 91 87 71 69 55 55 53 51 48 43 42 34 31 29 21 18 18 13 12 10 9 9 7 7 6</canonical_bands>
                <polymorphic_bands>111 97 91 87 71 69 55 53 51 48 43 34 31 29 21 18 18 13 12 10 9 9 7 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGATTCTGACACGATTTTAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCCAAGAAATATCCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>363</pcr_amplicon_size>
		<canonical_amplicon>TCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAAWTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32428</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>29514</contig_pos>
        <strand>+</strand>
        <context>taggacgaaw[C/T]ttcaaagtgg</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAAT</left_flank>
        <right_flank>TTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATAAAAATAACCGGAATGTAGTCGTGCTTGGGCTCATTTTGAAGCTCATTTAATTCCAGATCGATTTGTATAGTTTTTGTCAAATTTAGACAAAAAGTAGCCAAGATACGGTAAAAAGAAATGAGACTATTTATTAATTGCAAATTTCCAAAAATTCGAACAAAGTTATCAATTTTTGTAATACAATCCAATCCTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGGTGGAGCGGCGATTTGAACTGCAACCGGAAGCCCATCACAATTCTTCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATTTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAGTAACCGGTACAGTACCCGCCGCGAAATCAATCAAATTATAGAGTGCCGTGTAGCTGGTTGCGGACATAATTTTGTTGGGAACCCCGTGGTGTGGGGGTGGACAACCGAACGATGGACACACTATCGCGTCGAGACCCTTCGCACGCATCGCCATGACGAATTCATGACGGTAGTCCTCGATTTTCTCGTGCATTAGACGCATTTCTGGAAGATTCTTGATTTTTTGGAATTTTCTAAGCTTTAAACGTGTTAAAAACTTGTCAAAACAGTC</canonical>
            <polymorphic>AAAATAAAAATAACCGGAATGTAGTCGTGCTTGGGCTCATTTTGAAGCTCATTTAATTCCAGATCGATTTGTATAGTTTTTGTCAAATTTAGACAAAAAGTAGCCAAGATACGGTAAAAAGAAATGAGACTATTTATTAATTGCAAATTTCCAAAAATTCGAACAAAGTTATCAATTTTTGTAATACAATCCAATCCTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGGTGGAGCGGCGATTTGAACTGCAACCGGAAGCCCATCACAATTCTTCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATYTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATTTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAGTAACCGGTACAGTACCCGCCGCGAAATCAATCAAATTATAGAGTGCCGTGTAGCTGGTTGCGGACATAATTTTGTTGGGAACCCCGTGGTGTGGGGGTGGACAACCGAACGATGGACACACTATCGCGTCGAGACCCTTCGCACGCATCGCCATGACGAATTCATGACGGTAGTCCTCGATTTTCTCGTGCATTAGACGCATTTCTGGAAGATTCTTGATTTTTTGGAATTTTCTAAGCTTTAAACGTGTTAAAAACTTGTCAAAACAGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>212 180 119 85 69 60 55 50 44 42 28 24 13 10 9</canonical_bands>
                <polymorphic_bands>212 180 119 97 85 69 60 50 44 28 24 13 10 9</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>111 91 87 71 69 55 54 53 51 48 44 42 34 31 29 21 18 18 13 12 10 9 9 7 7 6</canonical_bands>
                <polymorphic_bands>111 97 91 87 71 69 54 53 51 48 44 34 31 29 21 18 18 13 12 10 9 9 7 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGATTCTGACACGATTTTAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCCAAGAAATATCCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>363</pcr_amplicon_size>
		<canonical_amplicon>TCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATYTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32429</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>29615</contig_pos>
        <strand></strand>
        <context>gcaaaattaa[C/T]ygagatacgg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAA</left_flank>
        <right_flank>CGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCCAAGATACGGTAAAAAGAAATGAGACTATTTATTAATTGCAAATTTCCAAAAATTCGAACAAAGTTATCAATTTTTGTAATACAATCCAATCCTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGGTGGAGCGGCGATTTGAACTGCAACCGGAAGCCCATCACAATTCTTCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATTTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAGTAACCGGTACAGTACCCGCCGCGAAATCAATCAAATTATAGAGTGCCGTGTAGCTGGTTGCGGACATAATTTTGTTGGGAACCCCGTGGTGTGGGGGTGGACAACCGAACGATGGACACACTATCGCGTCGAGACCCTTCGCACGCATCGCCATGACGAATTCATGACGGTAGTCCTCGATTTTCTCGTGCATTAGACGCATTTCTGGAAGATTCTTGATTTTTTGGAATTTTCTAAGCTTTAAACGTGTTAAAAACTTGTCAAAACAGTCTGAAACTAGTTTGAACGTTTTTGTCTTGTTGAAAGCTTTACAATGAATCTAAACACGACTAGGATCCGCCCATTTTGATTTGTTCGGGCGCGTCGCGGACG</canonical>
            <polymorphic>AGCCAAGATACGGTAAAAAGAAATGAGACTATTTATTAATTGCAAATTTCCAAAAATTCGAACAAAGTTATCAATTTTTGTAATACAATCCAATCCTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGGTGGAGCGGCGATTTGAACTGCAACCGGAAGCCCATCACAATTCTTCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAAYCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATTTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAGTAACCGGTACAGTACCCGCCGCGAAATCAATCAAATTATAGAGTGCCGTGTAGCTGGTTGCGGACATAATTTTGTTGGGAACCCCGTGGTGTGGGGGTGGACAACCGAACGATGGACACACTATCGCGTCGAGACCCTTCGCACGCATCGCCATGACGAATTCATGACGGTAGTCCTCGATTTTCTCGTGCATTAGACGCATTTCTGGAAGATTCTTGATTTTTTGGAATTTTCTAAGCTTTAAACGTGTTAAAAACTTGTCAAAACAGTCTGAAACTAGTTTGAACGTTTTTGTCTTGTTGAAAGCTTTACAATGAATCTAAACACGACTAGGATCCGCCCATTTTGATTTGTTCGGGCGCGTCGCGGACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>497 261 212 21 9</canonical_bands>
                <polymorphic_bands>709 261 21 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGATTCTGACACGATTTTAC</pcr_primer_p1>
		<pcr_primer_p2>ATTCAAAATTCCAAGAAATATCC</pcr_primer_p2>
		<pcr_amplicon_size>367</pcr_amplicon_size>
		<canonical_amplicon>TCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAAT</canonical_amplicon>
		<polymorphic_amplicon>TCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAAYCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32430</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>29616</contig_pos>
        <strand></strand>
        <context>caaaattaay[C/T]gagatacggt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAAC</left_flank>
        <right_flank>GAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCAAGATACGGTAAAAAGAAATGAGACTATTTATTAATTGCAAATTTCCAAAAATTCGAACAAAGTTATCAATTTTTGTAATACAATCCAATCCTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGGTGGAGCGGCGATTTGAACTGCAACCGGAAGCCCATCACAATTCTTCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATTTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAGTAACCGGTACAGTACCCGCCGCGAAATCAATCAAATTATAGAGTGCCGTGTAGCTGGTTGCGGACATAATTTTGTTGGGAACCCCGTGGTGTGGGGGTGGACAACCGAACGATGGACACACTATCGCGTCGAGACCCTTCGCACGCATCGCCATGACGAATTCATGACGGTAGTCCTCGATTTTCTCGTGCATTAGACGCATTTCTGGAAGATTCTTGATTTTTTGGAATTTTCTAAGCTTTAAACGTGTTAAAAACTTGTCAAAACAGTCTGAAACTAGTTTGAACGTTTTTGTCTTGTTGAAAGCTTTACAATGAATCTAAACACGACTAGGATCCGCCCATTTTGATTTGTTCGGGCGCGTCGCGGACGT</canonical>
            <polymorphic>GCCAAGATACGGTAAAAAGAAATGAGACTATTTATTAATTGCAAATTTCCAAAAATTCGAACAAAGTTATCAATTTTTGTAATACAATCCAATCCTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGGTGGAGCGGCGATTTGAACTGCAACCGGAAGCCCATCACAATTCTTCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACYGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATTTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAGTAACCGGTACAGTACCCGCCGCGAAATCAATCAAATTATAGAGTGCCGTGTAGCTGGTTGCGGACATAATTTTGTTGGGAACCCCGTGGTGTGGGGGTGGACAACCGAACGATGGACACACTATCGCGTCGAGACCCTTCGCACGCATCGCCATGACGAATTCATGACGGTAGTCCTCGATTTTCTCGTGCATTAGACGCATTTCTGGAAGATTCTTGATTTTTTGGAATTTTCTAAGCTTTAAACGTGTTAAAAACTTGTCAAAACAGTCTGAAACTAGTTTGAACGTTTTTGTCTTGTTGAAAGCTTTACAATGAATCTAAACACGACTAGGATCCGCCCATTTTGATTTGTTCGGGCGCGTCGCGGACGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>497 262 212 21 8</canonical_bands>
                <polymorphic_bands>709 262 21 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGATTCTGACACGATTTTAC</pcr_primer_p1>
		<pcr_primer_p2>ATTCAAAATTCCAAGAAATATCC</pcr_primer_p2>
		<pcr_amplicon_size>367</pcr_amplicon_size>
		<canonical_amplicon>TCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAAT</canonical_amplicon>
		<polymorphic_amplicon>TCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACYGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32431</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>29640</contig_pos>
        <strand></strand>
        <context>tttgaaaaaa[T/A]TCCAATTTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAA</left_flank>
        <right_flank>TCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGACTATTTATTAATTGCAAATTTCCAAAAATTCGAACAAAGTTATCAATTTTTGTAATACAATCCAATCCTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGGTGGAGCGGCGATTTGAACTGCAACCGGAAGCCCATCACAATTCTTCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATTTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAGTAACCGGTACAGTACCCGCCGCGAAATCAATCAAATTATAGAGTGCCGTGTAGCTGGTTGCGGACATAATTTTGTTGGGAACCCCGTGGTGTGGGGGTGGACAACCGAACGATGGACACACTATCGCGTCGAGACCCTTCGCACGCATCGCCATGACGAATTCATGACGGTAGTCCTCGATTTTCTCGTGCATTAGACGCATTTCTGGAAGATTCTTGATTTTTTGGAATTTTCTAAGCTTTAAACGTGTTAAAAACTTGTCAAAACAGTCTGAAACTAGTTTGAACGTTTTTGTCTTGTTGAAAGCTTTACAATGAATCTAAACACGACTAGGATCCGCCCATTTTGATTTGTTCGGGCGCGTCGCGGACGTGCGTCGCGCGTCTAGGTGAAATTC</canonical>
            <polymorphic>AGACTATTTATTAATTGCAAATTTCCAAAAATTCGAACAAAGTTATCAATTTTTGTAATACAATCCAATCCTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGGTGGAGCGGCGATTTGAACTGCAACCGGAAGCCCATCACAATTCTTCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAAWTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATTTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAGTAACCGGTACAGTACCCGCCGCGAAATCAATCAAATTATAGAGTGCCGTGTAGCTGGTTGCGGACATAATTTTGTTGGGAACCCCGTGGTGTGGGGGTGGACAACCGAACGATGGACACACTATCGCGTCGAGACCCTTCGCACGCATCGCCATGACGAATTCATGACGGTAGTCCTCGATTTTCTCGTGCATTAGACGCATTTCTGGAAGATTCTTGATTTTTTGGAATTTTCTAAGCTTTAAACGTGTTAAAAACTTGTCAAAACAGTCTGAAACTAGTTTGAACGTTTTTGTCTTGTTGAAAGCTTTACAATGAATCTAAACACGACTAGGATCCGCCCATTTTGATTTGTTCGGGCGCGTCGCGGACGTGCGTCGCGCGTCTAGGTGAAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>212 180 165 119 69 55 50 42 28 24 19 13 10 9 5</canonical_bands>
                <polymorphic_bands>212 180 165 119 74 69 55 42 28 19 13 10 9 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>165 111 91 87 71 69 55 51 48 42 34 29 21 18 18 13 12 12 10 9 9 7 7 6 5</canonical_bands>
                <polymorphic_bands>165 111 91 87 71 69 55 51 48 42 35 34 21 18 18 13 12 12 10 9 9 7 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGATTCTGACACGATTTTAC</pcr_primer_p1>
		<pcr_primer_p2>AGTTGAGAAAGGTTAAGGTAGGA</pcr_primer_p2>
		<pcr_amplicon_size>412</pcr_amplicon_size>
		<canonical_amplicon>TCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATTTCCTACCTTAACCTTTCTCAACT</canonical_amplicon>
		<polymorphic_amplicon>TCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAAWTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATTTCCTACCTTAACCTTTCTCAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32432</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>29683</contig_pos>
        <strand></strand>
        <context>AAGAAAATTA[A/T]ATCTCAAATW</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTA</left_flank>
        <right_flank>ATCTCAAATTTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCAATTTTTGTAATACAATCCAATCCTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGGTGGAGCGGCGATTTGAACTGCAACCGGAAGCCCATCACAATTCTTCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATTTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAGTAACCGGTACAGTACCCGCCGCGAAATCAATCAAATTATAGAGTGCCGTGTAGCTGGTTGCGGACATAATTTTGTTGGGAACCCCGTGGTGTGGGGGTGGACAACCGAACGATGGACACACTATCGCGTCGAGACCCTTCGCACGCATCGCCATGACGAATTCATGACGGTAGTCCTCGATTTTCTCGTGCATTAGACGCATTTCTGGAAGATTCTTGATTTTTTGGAATTTTCTAAGCTTTAAACGTGTTAAAAACTTGTCAAAACAGTCTGAAACTAGTTTGAACGTTTTTGTCTTGTTGAAAGCTTTACAATGAATCTAAACACGACTAGGATCCGCCCATTTTGATTTGTTCGGGCGCGTCGCGGACGTGCGTCGCGCGTCTAGGTGAAATTCCAAAATGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTGAAGC</canonical>
            <polymorphic>TATCAATTTTTGTAATACAATCCAATCCTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGGTGGAGCGGCGATTTGAACTGCAACCGGAAGCCCATCACAATTCTTCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAWATCTCAAATTTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAGTAACCGGTACAGTACCCGCCGCGAAATCAATCAAATTATAGAGTGCCGTGTAGCTGGTTGCGGACATAATTTTGTTGGGAACCCCGTGGTGTGGGGGTGGACAACCGAACGATGGACACACTATCGCGTCGAGACCCTTCGCACGCATCGCCATGACGAATTCATGACGGTAGTCCTCGATTTTCTCGTGCATTAGACGCATTTCTGGAAGATTCTTGATTTTTTGGAATTTTCTAAGCTTTAAACGTGTTAAAAACTTGTCAAAACAGTCTGAAACTAGTTTGAACGTTTTTGTCTTGTTGAAAGCTTTACAATGAATCTAAACACGACTAGGATCCGCCCATTTTGATTTGTTCGGGCGCGTCGCGGACGTGCGTCGCGCGTCTAGGTGAAATTCCAAAATGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTGAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>283 220 190 181 60 27 21 9 9</canonical_bands>
                <polymorphic_bands>283 220 190 181 60 30 27 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGATTCTGACACGATTTTAC</pcr_primer_p1>
		<pcr_primer_p2>CTGTACAGAAACCAGAAGATGAG</pcr_primer_p2>
		<pcr_amplicon_size>439</pcr_amplicon_size>
		<canonical_amplicon>TCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATTTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAG</canonical_amplicon>
		<polymorphic_amplicon>TCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAWATCTCAAATTTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32433</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>29693</contig_pos>
        <strand></strand>
        <context>WATCTCAAAT[T/A]TCCTACCTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAAT</left_flank>
        <right_flank>TCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTAATACAATCCAATCCTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGGTGGAGCGGCGATTTGAACTGCAACCGGAAGCCCATCACAATTCTTCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATTTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAGTAACCGGTACAGTACCCGCCGCGAAATCAATCAAATTATAGAGTGCCGTGTAGCTGGTTGCGGACATAATTTTGTTGGGAACCCCGTGGTGTGGGGGTGGACAACCGAACGATGGACACACTATCGCGTCGAGACCCTTCGCACGCATCGCCATGACGAATTCATGACGGTAGTCCTCGATTTTCTCGTGCATTAGACGCATTTCTGGAAGATTCTTGATTTTTTGGAATTTTCTAAGCTTTAAACGTGTTAAAAACTTGTCAAAACAGTCTGAAACTAGTTTGAACGTTTTTGTCTTGTTGAAAGCTTTACAATGAATCTAAACACGACTAGGATCCGCCCATTTTGATTTGTTCGGGCGCGTCGCGGACGTGCGTCGCGCGTCTAGGTGAAATTCCAAAATGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTGAAGCATTTTATTTT</canonical>
            <polymorphic>TGTAATACAATCCAATCCTCTCCTCAACATCTCTCAATAGTCTCAAGACCATTTCTTCGCGGAATGGTGGAGCGGCGATTTGAACTGCAACCGGAAGCCCATCACAATTCTTCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATWTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAGTAACCGGTACAGTACCCGCCGCGAAATCAATCAAATTATAGAGTGCCGTGTAGCTGGTTGCGGACATAATTTTGTTGGGAACCCCGTGGTGTGGGGGTGGACAACCGAACGATGGACACACTATCGCGTCGAGACCCTTCGCACGCATCGCCATGACGAATTCATGACGGTAGTCCTCGATTTTCTCGTGCATTAGACGCATTTCTGGAAGATTCTTGATTTTTTGGAATTTTCTAAGCTTTAAACGTGTTAAAAACTTGTCAAAACAGTCTGAAACTAGTTTGAACGTTTTTGTCTTGTTGAAAGCTTTACAATGAATCTAAACACGACTAGGATCCGCCCATTTTGATTTGTTCGGGCGCGTCGCGGACGTGCGTCGCGCGTCTAGGTGAAATTCCAAAATGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTGAAGCATTTTATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>212 165 156 119 69 58 55 50 42 28 24 13 9</canonical_bands>
                <polymorphic_bands>240 165 156 119 69 58 55 50 42 24 13 9</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>165 105 91 87 71 69 58 55 51 48 42 34 29 21 18 13 12 9 9 7 6</canonical_bands>
                <polymorphic_bands>165 105 99 91 71 69 58 55 51 48 42 34 29 21 18 13 9 9 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGATTCTGACACGATTTTAC</pcr_primer_p1>
		<pcr_primer_p2>GGCACTCTATAATTTGATTGATTT</pcr_primer_p2>
		<pcr_amplicon_size>486</pcr_amplicon_size>
		<canonical_amplicon>TCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATTTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAGTAACCGGTACAGTACCCGCCGCGAAATCAATCAAATTATAGAGTGCC</canonical_amplicon>
		<polymorphic_amplicon>TCGATTCTGACACGATTTTACGGTCCCACGAGTCCTCGGTCTGCAAATTTCAGGGTTTTTTAAAAAAATATTCAGCGTTTTTGAGCCGAAATCAATTCCAGTGTGTTCGTGACGTTGAGAGCTTCAAAATGAGCTCCAACACGACTAGGCTCCGCCCATTTCGAAATTTCAGACGCGCCGCGGTCATGCGTCGCGTGTCTAGGACGAATTTTCAAAGTGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCATATGAAATTTCAGACACAAATTTTTAAAATTTATTGATTTTGGAGCAAAATTAACCGAGATACGGTAGTTTTGAAAAAATTCCAATTTGGATATTTCTTGGAATTTTGAATTAAGAAAATTAAATCTCAAATWTCCTACCTTAACCTTTCTCAACTCCTGCTCATCTTCTGGTTTCTGTACAGTAACCGGTACAGTACCCGCCGCGAAATCAATCAAATTATAGAGTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32434</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>48773</contig_pos>
        <strand></strand>
        <context>gtccaacatt[T/C]gaatttcaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAGCGTCCAACATT</left_flank>
        <right_flank>GAATTTCAAAATTGTTTTAAGTTTTAAGCCCAATTTAAAAAGATATATTC</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTGAATCGTGAAGCCTGACGAATACGATTTCGTCATTAAACATGCGTTAAAATGAGCATAAACACGACTAGGCTCCGCCCCCTTTGAGTTTTCACGAAGACACGCGACGCACGACCGCGACGCGTCCGAAAAATCAAAGTGCGCGGATCTTAGTCATGTTCGGGCTTATTTTGAAGCTCTTAACGTGCCAAATTCAAAACTTGAGGTTAATTTTGATTTAGACAAAAGTTGACCTAGTTAGGACGACTTTACTTTTTTTGGGTCAAAATTTGAAATCATCATAACTCGAATAGTTTTGCTCCAATTTTTTCAAAAGTCACATTTTCAAGTTTTTGACATTTTGAGCTTTCGATTGAGCCCAAACACGCGTAGGCTCCGCTCACTTTGAAAGTTCCTCATAGACACGCGACGCACAACCGCGACGCCCCCGAAAAACGAAAGTGAGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAGCGTCCAACATTTGAATTTCAAAATTGTTTTAAGTTTTAAGCCCAATTTAAAAAGATATATTCAAAAATAAAATTAGAGATTGCAAATTTTCAAAATTCAAAAACTCCAACCTTGAGTGACCGCCGCAGAATTCGGCATTCCAGCATTGATACTTTGTTGGTCGAGCACTGCCAAAGAACTCACAGATACCGTACTCGGTATACTGTAGTACTTCATTAGTGCTAATCCACAGTAATCGTATTCCGTCGCAATTCCAATATCGTACATTTGGTTGGCCAAAAATGCATGTAGACCCGGATCGCCTAGTCCAACTGAAAAATAAAATTGAAATTTGAATTTTAGGCCTAAAATGGGTTAAAATGAGCCTAAACACGACCTACTTTAAGCCCCGCCCATTTTTTTGGTATTCCAGGTTAAAGTGGGCGGAGCCTAGATTTGTTGGAATGCATTAGAACTTATTTTTAACGCTGAGTTTGAATCTGGTATGTAAAGCGCATCAAAATGAGCCCAAG</canonical>
            <polymorphic>ATTTTGAATCGTGAAGCCTGACGAATACGATTTCGTCATTAAACATGCGTTAAAATGAGCATAAACACGACTAGGCTCCGCCCCCTTTGAGTTTTCACGAAGACACGCGACGCACGACCGCGACGCGTCCGAAAAATCAAAGTGCGCGGATCTTAGTCATGTTCGGGCTTATTTTGAAGCTCTTAACGTGCCAAATTCAAAACTTGAGGTTAATTTTGATTTAGACAAAAGTTGACCTAGTTAGGACGACTTTACTTTTTTTGGGTCAAAATTTGAAATCATCATAACTCGAATAGTTTTGCTCCAATTTTTTCAAAAGTCACATTTTCAAGTTTTTGACATTTTGAGCTTTCGATTGAGCCCAAACACGCGTAGGCTCCGCTCACTTTGAAAGTTCCTCATAGACACGCGACGCACAACCGCGACGCCCCCGAAAAACGAAAGTGAGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAGCGTCCAACATTYGAATTTCAAAATTGTTTTAAGTTTTAAGCCCAATTTAAAAAGATATATTCAAAAATAAAATTAGAGATTGCAAATTTTCAAAATTCAAAAACTCCAACCTTGAGTGACCGCCGCAGAATTCGGCATTCCAGCATTGATACTTTGTTGGTCGAGCACTGCCAAAGAACTCACAGATACCGTACTCGGTATACTGTAGTACTTCATTAGTGCTAATCCACAGTAATCGTATTCCGTCGCAATTCCAATATCGTACATTTGGTTGGCCAAAAATGCATGTAGACCCGGATCGCCTAGTCCAACTGAAAAATAAAATTGAAATTTGAATTTTAGGCCTAAAATGGGTTAAAATGAGCCTAAACACGACCTACTTTAAGCCCCGCCCATTTTTTTGGTATTCCAGGTTAAAGTGGGCGGAGCCTAGATTTGTTGGAATGCATTAGAACTTATTTTTAACGCTGAGTTTGAATCTGGTATGTAAAGCGCATCAAAATGAGCCCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGATTTTTCAGCTTTCCAAAC</pcr_primer_p1>
		<pcr_primer_p2>AAGGTTGGAGTTTTTGAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>956</pcr_amplicon_size>
		<canonical_amplicon>TTGAATTTCAAAATTGTTTTAAGTTTTAAGCCCAATTTAAAAAGATATATTCAAAAATAAAATTAGAGATTGCAAATTTTCAAAATTCAAAAACTCCAACCTT</canonical_amplicon>
		<polymorphic_amplicon>TYGAATTTCAAAATTGTTTTAAGTTTTAAGCCCAATTTAAAAAGATATATTCAAAAATAAAATTAGAGATTGCAAATTTTCAAAATTCAAAAACTCCAACCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32435</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>48835</contig_pos>
        <strand></strand>
        <context>AAAATAAAAT[T/A]AGAGATTGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTGTTTTAAGTTTTAAGCCCAATTTAAAAAGATATATTCAAAAATAAAAT</left_flank>
        <right_flank>AGAGATTGCAAATTTTCAAAATTCAAAAACTCCAACCTTGAGTGACCGCC</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACACGACTAGGCTCCGCCCCCTTTGAGTTTTCACGAAGACACGCGACGCACGACCGCGACGCGTCCGAAAAATCAAAGTGCGCGGATCTTAGTCATGTTCGGGCTTATTTTGAAGCTCTTAACGTGCCAAATTCAAAACTTGAGGTTAATTTTGATTTAGACAAAAGTTGACCTAGTTAGGACGACTTTACTTTTTTTGGGTCAAAATTTGAAATCATCATAACTCGAATAGTTTTGCTCCAATTTTTTCAAAAGTCACATTTTCAAGTTTTTGACATTTTGAGCTTTCGATTGAGCCCAAACACGCGTAGGCTCCGCTCACTTTGAAAGTTCCTCATAGACACGCGACGCACAACCGCGACGCCCCCGAAAAACGAAAGTGAGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAGCGTCCAACATTTGAATTTCAAAATTGTTTTAAGTTTTAAGCCCAATTTAAAAAGATATATTCAAAAATAAAATTAGAGATTGCAAATTTTCAAAATTCAAAAACTCCAACCTTGAGTGACCGCCGCAGAATTCGGCATTCCAGCATTGATACTTTGTTGGTCGAGCACTGCCAAAGAACTCACAGATACCGTACTCGGTATACTGTAGTACTTCATTAGTGCTAATCCACAGTAATCGTATTCCGTCGCAATTCCAATATCGTACATTTGGTTGGCCAAAAATGCATGTAGACCCGGATCGCCTAGTCCAACTGAAAAATAAAATTGAAATTTGAATTTTAGGCCTAAAATGGGTTAAAATGAGCCTAAACACGACCTACTTTAAGCCCCGCCCATTTTTTTGGTATTCCAGGTTAAAGTGGGCGGAGCCTAGATTTGTTGGAATGCATTAGAACTTATTTTTAACGCTGAGTTTGAATCTGGTATGTAAAGCGCATCAAAATGAGCCCAAGCTTCGCCCACTTTGGTTTTTCGGGTGCGCCGCGGTCGTGCGTCGCGTGCCGAAGAGATTTCT</canonical>
            <polymorphic>AAACACGACTAGGCTCCGCCCCCTTTGAGTTTTCACGAAGACACGCGACGCACGACCGCGACGCGTCCGAAAAATCAAAGTGCGCGGATCTTAGTCATGTTCGGGCTTATTTTGAAGCTCTTAACGTGCCAAATTCAAAACTTGAGGTTAATTTTGATTTAGACAAAAGTTGACCTAGTTAGGACGACTTTACTTTTTTTGGGTCAAAATTTGAAATCATCATAACTCGAATAGTTTTGCTCCAATTTTTTCAAAAGTCACATTTTCAAGTTTTTGACATTTTGAGCTTTCGATTGAGCCCAAACACGCGTAGGCTCCGCTCACTTTGAAAGTTCCTCATAGACACGCGACGCACAACCGCGACGCCCCCGAAAAACGAAAGTGAGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAGCGTCCAACATTTGAATTTCAAAATTGTTTTAAGTTTTAAGCCCAATTTAAAAAGATATATTCAAAAATAAAATWAGAGATTGCAAATTTTCAAAATTCAAAAACTCCAACCTTGAGTGACCGCCGCAGAATTCGGCATTCCAGCATTGATACTTTGTTGGTCGAGCACTGCCAAAGAACTCACAGATACCGTACTCGGTATACTGTAGTACTTCATTAGTGCTAATCCACAGTAATCGTATTCCGTCGCAATTCCAATATCGTACATTTGGTTGGCCAAAAATGCATGTAGACCCGGATCGCCTAGTCCAACTGAAAAATAAAATTGAAATTTGAATTTTAGGCCTAAAATGGGTTAAAATGAGCCTAAACACGACCTACTTTAAGCCCCGCCCATTTTTTTGGTATTCCAGGTTAAAGTGGGCGGAGCCTAGATTTGTTGGAATGCATTAGAACTTATTTTTAACGCTGAGTTTGAATCTGGTATGTAAAGCGCATCAAAATGAGCCCAAGCTTCGCCCACTTTGGTTTTTCGGGTGCGCCGCGGTCGTGCGTCGCGTGCCGAAGAGATTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>240 196 131 121 73 58 36 35 27 22 18 14 9 8 6 6</canonical_bands>
                <polymorphic_bands>240 196 131 121 73 58 41 36 35 22 18 9 8 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGATTTTTCAGCTTTCCAAAC</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTATCAATGCTGGAATG</pcr_primer_p2>
		<pcr_amplicon_size>999</pcr_amplicon_size>
		<canonical_amplicon>TTAGAGATTGCAAATTTTCAAAATTCAAAAACTCCAACCTTGAGTGACCGCCGCAGAATTCGGCATTCCAGCATTGATACTTTG</canonical_amplicon>
		<polymorphic_amplicon>TWAGAGATTGCAAATTTTCAAAATTCAAAAACTCCAACCTTGAGTGACCGCCGCAGAATTCGGCATTCCAGCATTGATACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32436</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>49095</contig_pos>
        <strand></strand>
        <context>ATTGaaattt[G/T]aattttaggc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCATGTAGACCCGGATCGCCTAGTCCAACTGAAAAATAAAATTGAAATTT</left_flank>
        <right_flank>AATTTTAGGCCTAAAATGGGTTAAAATGAGCCTAAACACGACCTACTTTA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTTCAAGTTTTTGACATTTTGAGCTTTCGATTGAGCCCAAACACGCGTAGGCTCCGCTCACTTTGAAAGTTCCTCATAGACACGCGACGCACAACCGCGACGCCCCCGAAAAACGAAAGTGAGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAGCGTCCAACATTTGAATTTCAAAATTGTTTTAAGTTTTAAGCCCAATTTAAAAAGATATATTCAAAAATAAAATTAGAGATTGCAAATTTTCAAAATTCAAAAACTCCAACCTTGAGTGACCGCCGCAGAATTCGGCATTCCAGCATTGATACTTTGTTGGTCGAGCACTGCCAAAGAACTCACAGATACCGTACTCGGTATACTGTAGTACTTCATTAGTGCTAATCCACAGTAATCGTATTCCGTCGCAATTCCAATATCGTACATTTGGTTGGCCAAAAATGCATGTAGACCCGGATCGCCTAGTCCAACTGAAAAATAAAATTGAAATTTGAATTTTAGGCCTAAAATGGGTTAAAATGAGCCTAAACACGACCTACTTTAAGCCCCGCCCATTTTTTTGGTATTCCAGGTTAAAGTGGGCGGAGCCTAGATTTGTTGGAATGCATTAGAACTTATTTTTAACGCTGAGTTTGAATCTGGTATGTAAAGCGCATCAAAATGAGCCCAAGCTTCGCCCACTTTGGTTTTTCGGGTGCGCCGCGGTCGTGCGTCGCGTGCCGAAGAGATTTCTCAAAGTGGGCGGAGCCTAGTCGTGTTCGGGCTTATTTTGAAGCTCAAAACGCGTTGAGGACACTATTGTAGCTTAAATTCCATCAAATACAAAAATTATACAGAAAAATCTCGGTTTTAAAATTTGGATTTTTTTTTTGCGAAATTTGTTTGAATCATAACTTTGTCAAATTTGTTTCAAACTCTACAATTCTTACTTTATTGAACTTGTGACATTAAGAGCTTCAAAATGAGCCCAAACACGACTAGGCTCCGCCCATT</canonical>
            <polymorphic>CATTTTCAAGTTTTTGACATTTTGAGCTTTCGATTGAGCCCAAACACGCGTAGGCTCCGCTCACTTTGAAAGTTCCTCATAGACACGCGACGCACAACCGCGACGCCCCCGAAAAACGAAAGTGAGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAGCGTCCAACATTTGAATTTCAAAATTGTTTTAAGTTTTAAGCCCAATTTAAAAAGATATATTCAAAAATAAAATTAGAGATTGCAAATTTTCAAAATTCAAAAACTCCAACCTTGAGTGACCGCCGCAGAATTCGGCATTCCAGCATTGATACTTTGTTGGTCGAGCACTGCCAAAGAACTCACAGATACCGTACTCGGTATACTGTAGTACTTCATTAGTGCTAATCCACAGTAATCGTATTCCGTCGCAATTCCAATATCGTACATTTGGTTGGCCAAAAATGCATGTAGACCCGGATCGCCTAGTCCAACTGAAAAATAAAATTGAAATTTKAATTTTAGGCCTAAAATGGGTTAAAATGAGCCTAAACACGACCTACTTTAAGCCCCGCCCATTTTTTTGGTATTCCAGGTTAAAGTGGGCGGAGCCTAGATTTGTTGGAATGCATTAGAACTTATTTTTAACGCTGAGTTTGAATCTGGTATGTAAAGCGCATCAAAATGAGCCCAAGCTTCGCCCACTTTGGTTTTTCGGGTGCGCCGCGGTCGTGCGTCGCGTGCCGAAGAGATTTCTCAAAGTGGGCGGAGCCTAGTCGTGTTCGGGCTTATTTTGAAGCTCAAAACGCGTTGAGGACACTATTGTAGCTTAAATTCCATCAAATACAAAAATTATACAGAAAAATCTCGGTTTTAAAATTTGGATTTTTTTTTTGCGAAATTTGTTTGAATCATAACTTTGTCAAATTTGTTTCAAACTCTACAATTCTTACTTTATTGAACTTGTGACATTAAGAGCTTCAAAATGAGCCCAAACACGACTAGGCTCCGCCCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>315 200 179 92 71 45 35 26 22 9 6</canonical_bands>
                <polymorphic_bands>321 200 179 92 71 45 35 26 22 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCATTAGTGCTAATCCACAGT</pcr_primer_p1>
		<pcr_primer_p2>CTAATGCATTCCAACAAATCTA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CTTCATTAGTGCTAATCCACAGTAATCGTATTCCGTCGCAATTCCAATATCGTACATTTGGTTGGCCAAAAATGCATGTAGACCCGGATCGCCTAGTCCAACTGAAAAATAAAATTGAAATTTGAATTTTAGGCCTAAAATGGGTTAAAATGAGCCTAAACACGACCTACTTTAAGCCCCGCCCATTTTTTTGGTATTCCAGGTTAAAGTGGGCGGAGCCTAGATTTGTTGGAATGCATTAG</canonical_amplicon>
		<polymorphic_amplicon>CTTCATTAGTGCTAATCCACAGTAATCGTATTCCGTCGCAATTCCAATATCGTACATTTGGTTGGCCAAAAATGCATGTAGACCCGGATCGCCTAGTCCAACTGAAAAATAAAATTGAAATTTKAATTTTAGGCCTAAAATGGGTTAAAATGAGCCTAAACACGACCTACTTTAAGCCCCGCCCATTTTTTTGGTATTCCAGGTTAAAGTGGGCGGAGCCTAGATTTGTTGGAATGCATTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32437</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>61331</contig_pos>
        <strand>-</strand>
        <context>TGGCGTTTAG[A/G]GGGGTYCTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGAGCAATAACTTTGAAAACCAGAATTTGGGGGTCAAAATGGCGTTTAG</left_flank>
        <right_flank>GGGGTACTGTAGCTTTGAAAATGAGCAATAGGTGTTGGAGAGCTCGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACCCCCAGAAGCTCCATTTTCTTTTTAACAACCCTCAAGCCATTTTGAAATCTAAATGCACTGTTAAGTCGGTTCTACAGTCATCCCTATCTCAATTTTCTCGATTTCAAGCTCAAAATTTTTTGAAATACTTGACAAGCTGCCTCAACTCCATCTACAGTAATCCTAACTCGAATTTCTCGATTTTTATCTCCTAATCCATCCACAGAGTCTGTAGCTTTTGAAAATGAGCAATAACTTTGAAAACCAGAATTTGGGGGTCAAAATGGCGTTTAGTGGGGTACTGTAGCTTTGAAAATGAGCAATAGGTGTTGGAGAGCTCGAAAATGGGCGATCTACAGTAATCCTAGCTCAACCTTCCTAATTATCGGCATAGTTTGAAGCGAGAGGGATACTGTAGTCTTTGAAATGAGCAATATCCTGAAAATTGACTATTTTAGGTTTAAAATGGGGCCTTGAGACCTGAAAATGAAATGGGAGAGATACTGTAGGTTTTGAAATGAGCAATAGCATCGAAGATCATCATAAATGGGTAGCTACAGTAATCCTAGCTCAATTTCCTCGTTTTGTGGCTCCAAATTCCTCAAAACCCAAGGGGAATCCTGATTTTTAGCTTGAAAATCATCCAAATCCATTGACAACTGGTTGAGGTCCATCTACAGTAATCCTGGTTCAATTTTCTTGATTTCTGGCCTGAAATTCGTTGAAAATTCCGGATTTTTGGGTCGAAACCGCTCTACTGTATCTGAAAAAATCATCGAAATCACTATCTACAGT</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACCCCCAGAAGCTCCATTTTCTTTTTAACAACCCTCAAGCCATTTTGAAATCTAAATGCACTGTTAAGTCGGTTCTACAGTCATCCCTATCTCAATTTTCTCGATTTCAAGCTCAAAATTTTTTGAAATACTTGACAAGCTGCCTCAACTCCATCTACAGTAATCCTAACTCGAATTTCTCGATTTTTATCTCCTAATCCATCCACAGAGTCTGTAGCTTTTGAAAATGAGCAATAACTTTGAAAACCAGAATTTGGGGGTCAAAATGGCGTTTAGRGGGGTACTGTAGCTTTGAAAATGAGCAATAGGTGTTGGAGAGCTCGAAAATGGGCGATCTACAGTAATCCTAGCTCAACCTTCCTAATTATCGGCATAGTTTGAAGCGAGAGGGATACTGTAGTCTTTGAAATGAGCAATATCCTGAAAATTGACTATTTTAGGTTTAAAATGGGGCCTTGAGACCTGAAAATGAAATGGGAGAGATACTGTAGGTTTTGAAATGAGCAATAGCATCGAAGATCATCATAAATGGGTAGCTACAGTAATCCTAGCTCAATTTCCTCGTTTTGTGGCTCCAAATTCCTCAAAACCCAAGGGGAATCCTGATTTTTAGCTTGAAAATCATCCAAATCCATTGACAACTGGTTGAGGTCCATCTACAGTAATCCTGGTTCAATTTTCTTGATTTCTGGCCTGAAATTCGTTGAAAATTCCGGATTTTTGGGTCGAAACCGCTCTACTGTATCTGAAAAAATCATCGAAATCACTATCTACAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>283 260 195 145 73 33 11</canonical_bands>
                <polymorphic_bands>283 260 195 145 106 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTCGAATTTCTCGATTTTTAT</pcr_primer_p1>
		<pcr_primer_p2>ATTGCTCATTTCAAAGACTACAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACTCGAATTTCTCGATTTTTATCTCCTAATCCATCCACAGAGTCTGTAGCTTTTGAAAATGAGCAATAACTTTGAAAACCAGAATTTGGGGGTCAAAATGGCGTTTAGTGGGGTACTGTAGCTTTGAAAATGAGCAATAGGTGTTGGAGAGCTCGAAAATGGGCGATCTACAGTAATCCTAGCTCAACCTTCCTAATTATCGGCATAGTTTGAAGCGAGAGGGATACTGTAGTCTTTGAAATGAGCAAT</canonical_amplicon>
		<polymorphic_amplicon>AACTCGAATTTCTCGATTTTTATCTCCTAATCCATCCACAGAGTCTGTAGCTTTTGAAAATGAGCAATAACTTTGAAAACCAGAATTTGGGGGTCAAAATGGCGTTTAGRGGGGTACTGTAGCTTTGAAAATGAGCAATAGGTGTTGGAGAGCTCGAAAATGGGCGATCTACAGTAATCCTAGCTCAACCTTCCTAATTATCGGCATAGTTTGAAGCGAGAGGGATACTGTAGTCTTTGAAATGAGCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32438</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>61337</contig_pos>
        <strand>-</strand>
        <context>TTAGRGGGGT[C/T]CTGTAGCTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATAACTTTGAAAACCAGAATTTGGGGGTCAAAATGGCGTTTAGTGGGGT</left_flank>
        <right_flank>CTGTAGCTTTGAAAATGAGCAATAGGTGTTGGAGAGCTCGAAAATGGGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACCCCCAGAAGCTCCATTTTCTTTTTAACAACCCTCAAGCCATTTTGAAATCTAAATGCACTGTTAAGTCGGTTCTACAGTCATCCCTATCTCAATTTTCTCGATTTCAAGCTCAAAATTTTTTGAAATACTTGACAAGCTGCCTCAACTCCATCTACAGTAATCCTAACTCGAATTTCTCGATTTTTATCTCCTAATCCATCCACAGAGTCTGTAGCTTTTGAAAATGAGCAATAACTTTGAAAACCAGAATTTGGGGGTCAAAATGGCGTTTAGTGGGGTACTGTAGCTTTGAAAATGAGCAATAGGTGTTGGAGAGCTCGAAAATGGGCGATCTACAGTAATCCTAGCTCAACCTTCCTAATTATCGGCATAGTTTGAAGCGAGAGGGATACTGTAGTCTTTGAAATGAGCAATATCCTGAAAATTGACTATTTTAGGTTTAAAATGGGGCCTTGAGACCTGAAAATGAAATGGGAGAGATACTGTAGGTTTTGAAATGAGCAATAGCATCGAAGATCATCATAAATGGGTAGCTACAGTAATCCTAGCTCAATTTCCTCGTTTTGTGGCTCCAAATTCCTCAAAACCCAAGGGGAATCCTGATTTTTAGCTTGAAAATCATCCAAATCCATTGACAACTGGTTGAGGTCCATCTACAGTAATCCTGGTTCAATTTTCTTGATTTCTGGCCTGAAATTCGTTGAAAATTCCGGATTTTTGGGTCGAAACCGCTCTACTGTATCTGAAAAAATCATCGAAATCACTATCTACAGTAATCCT</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACCCCCAGAAGCTCCATTTTCTTTTTAACAACCCTCAAGCCATTTTGAAATCTAAATGCACTGTTAAGTCGGTTCTACAGTCATCCCTATCTCAATTTTCTCGATTTCAAGCTCAAAATTTTTTGAAATACTTGACAAGCTGCCTCAACTCCATCTACAGTAATCCTAACTCGAATTTCTCGATTTTTATCTCCTAATCCATCCACAGAGTCTGTAGCTTTTGAAAATGAGCAATAACTTTGAAAACCAGAATTTGGGGGTCAAAATGGCGTTTAGTGGGGTYCTGTAGCTTTGAAAATGAGCAATAGGTGTTGGAGAGCTCGAAAATGGGCGATCTACAGTAATCCTAGCTCAACCTTCCTAATTATCGGCATAGTTTGAAGCGAGAGGGATACTGTAGTCTTTGAAATGAGCAATATCCTGAAAATTGACTATTTTAGGTTTAAAATGGGGCCTTGAGACCTGAAAATGAAATGGGAGAGATACTGTAGGTTTTGAAATGAGCAATAGCATCGAAGATCATCATAAATGGGTAGCTACAGTAATCCTAGCTCAATTTCCTCGTTTTGTGGCTCCAAATTCCTCAAAACCCAAGGGGAATCCTGATTTTTAGCTTGAAAATCATCCAAATCCATTGACAACTGGTTGAGGTCCATCTACAGTAATCCTGGTTCAATTTTCTTGATTTCTGGCCTGAAATTCGTTGAAAATTCCGGATTTTTGGGTCGAAACCGCTCTACTGTATCTGAAAAAATCATCGAAATCACTATCTACAGTAATCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>279 126 120 91 80 80 56 55 54 34 17 8</canonical_bands>
                <polymorphic_bands>279 181 120 91 80 80 56 54 34 17 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTCGAATTTCTCGATTTTTAT</pcr_primer_p1>
		<pcr_primer_p2>ATTGCTCATTTCAAAGACTACAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACTCGAATTTCTCGATTTTTATCTCCTAATCCATCCACAGAGTCTGTAGCTTTTGAAAATGAGCAATAACTTTGAAAACCAGAATTTGGGGGTCAAAATGGCGTTTAGTGGGGTACTGTAGCTTTGAAAATGAGCAATAGGTGTTGGAGAGCTCGAAAATGGGCGATCTACAGTAATCCTAGCTCAACCTTCCTAATTATCGGCATAGTTTGAAGCGAGAGGGATACTGTAGTCTTTGAAATGAGCAAT</canonical_amplicon>
		<polymorphic_amplicon>AACTCGAATTTCTCGATTTTTATCTCCTAATCCATCCACAGAGTCTGTAGCTTTTGAAAATGAGCAATAACTTTGAAAACCAGAATTTGGGGGTCAAAATGGCGTTTAGTGGGGTYCTGTAGCTTTGAAAATGAGCAATAGGTGTTGGAGAGCTCGAAAATGGGCGATCTACAGTAATCCTAGCTCAACCTTCCTAATTATCGGCATAGTTTGAAGCGAGAGGGATACTGTAGTCTTTGAAATGAGCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32439</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>61442</contig_pos>
        <strand>-</strand>
        <context>TTGAAGCGAG[C/T]GGGATACTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAGTAATCCTAGCTCAACCTTCCTAATTATCGGCATAGTTTGAAGCGAG</left_flank>
        <right_flank>GGGATACTGTAGTCTTTGAAATGAGCAATATCCTGAAAATTGACTATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACCCCCAGAAGCTCCATTTTCTTTTTAACAACCCTCAAGCCATTTTGAAATCTAAATGCACTGTTAAGTCGGTTCTACAGTCATCCCTATCTCAATTTTCTCGATTTCAAGCTCAAAATTTTTTGAAATACTTGACAAGCTGCCTCAACTCCATCTACAGTAATCCTAACTCGAATTTCTCGATTTTTATCTCCTAATCCATCCACAGAGTCTGTAGCTTTTGAAAATGAGCAATAACTTTGAAAACCAGAATTTGGGGGTCAAAATGGCGTTTAGTGGGGTACTGTAGCTTTGAAAATGAGCAATAGGTGTTGGAGAGCTCGAAAATGGGCGATCTACAGTAATCCTAGCTCAACCTTCCTAATTATCGGCATAGTTTGAAGCGAGAGGGATACTGTAGTCTTTGAAATGAGCAATATCCTGAAAATTGACTATTTTAGGTTTAAAATGGGGCCTTGAGACCTGAAAATGAAATGGGAGAGATACTGTAGGTTTTGAAATGAGCAATAGCATCGAAGATCATCATAAATGGGTAGCTACAGTAATCCTAGCTCAATTTCCTCGTTTTGTGGCTCCAAATTCCTCAAAACCCAAGGGGAATCCTGATTTTTAGCTTGAAAATCATCCAAATCCATTGACAACTGGTTGAGGTCCATCTACAGTAATCCTGGTTCAATTTTCTTGATTTCTGGCCTGAAATTCGTTGAAAATTCCGGATTTTTGGGTCGAAACCGCTCTACTGTATCTGAAAAAATCATCGAAATCACTATCTACAGTAATCCTAACTCGAATTTCTCGATTTTTATCTCCTAATCCATCCACAGAGAGTCAGTGACATGGTCCTTTCAGACCTGTCAATGCTGATTTTGGCCATTTTGAGACTCTTTC</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACCCCCAGAAGCTCCATTTTCTTTTTAACAACCCTCAAGCCATTTTGAAATCTAAATGCACTGTTAAGTCGGTTCTACAGTCATCCCTATCTCAATTTTCTCGATTTCAAGCTCAAAATTTTTTGAAATACTTGACAAGCTGCCTCAACTCCATCTACAGTAATCCTAACTCGAATTTCTCGATTTTTATCTCCTAATCCATCCACAGAGTCTGTAGCTTTTGAAAATGAGCAATAACTTTGAAAACCAGAATTTGGGGGTCAAAATGGCGTTTAGTGGGGTACTGTAGCTTTGAAAATGAGCAATAGGTGTTGGAGAGCTCGAAAATGGGCGATCTACAGTAATCCTAGCTCAACCTTCCTAATTATCGGCATAGTTTGAAGCGAGYGGGATACTGTAGTCTTTGAAATGAGCAATATCCTGAAAATTGACTATTTTAGGTTTAAAATGGGGCCTTGAGACCTGAAAATGAAATGGGAGAGATACTGTAGGTTTTGAAATGAGCAATAGCATCGAAGATCATCATAAATGGGTAGCTACAGTAATCCTAGCTCAATTTCCTCGTTTTGTGGCTCCAAATTCCTCAAAACCCAAGGGGAATCCTGATTTTTAGCTTGAAAATCATCCAAATCCATTGACAACTGGTTGAGGTCCATCTACAGTAATCCTGGTTCAATTTTCTTGATTTCTGGCCTGAAATTCGTTGAAAATTCCGGATTTTTGGGTCGAAACCGCTCTACTGTATCTGAAAAAATCATCGAAATCACTATCTACAGTAATCCTAACTCGAATTTCTCGATTTTTATCTCCTAATCCATCCACAGAGAGTCAGTGACATGGTCCTTTCAGACCTGTCAATGCTGATTTTGGCCATTTTGAGACTCTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGCTTTGAAAATGAGCAATAG</pcr_primer_p1>
		<pcr_primer_p2>TAGCTACCCATTTATGATGATCT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GTAGCTTTGAAAATGAGCAATAGGTGTTGGAGAGCTCGAAAATGGGCGATCTACAGTAATCCTAGCTCAACCTTCCTAATTATCGGCATAGTTTGAAGCGAGAGGGATACTGTAGTCTTTGAAATGAGCAATATCCTGAAAATTGACTATTTTAGGTTTAAAATGGGGCCTTGAGACCTGAAAATGAAATGGGAGAGATACTGTAGGTTTTGAAATGAGCAATAGCATCGAAGATCATCATAAATGGGTAGCTA</canonical_amplicon>
		<polymorphic_amplicon>GTAGCTTTGAAAATGAGCAATAGGTGTTGGAGAGCTCGAAAATGGGCGATCTACAGTAATCCTAGCTCAACCTTCCTAATTATCGGCATAGTTTGAAGCGAGYGGGATACTGTAGTCTTTGAAATGAGCAATATCCTGAAAATTGACTATTTTAGGTTTAAAATGGGGCCTTGAGACCTGAAAATGAAATGGGAGAGATACTGTAGGTTTTGAAATGAGCAATAGCATCGAAGATCATCATAAATGGGTAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32440</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>63363</contig_pos>
        <strand>+</strand>
        <context>TTCATTTTCA[C/G]GTCTCAAGGC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATGCTATTGCTCATTTCAAAACCTACAGTATTCCTCCCATTTCATTTTCA</left_flank>
        <right_flank>GTCTCAAGGCCCCATTTTAAACCTAAAATAGTCAATTTTCAGGATATTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTATTTCTACTCCAATATTTTCGGCAATTTTTGTACTCATGTAAGGTGACAAAGATAGCAAATTTGACCGTATCCACGTCAATTATCATGCATCTTCATCAGTGCAAGAATGGCCTTTTTTGGACATATTCTGGCAGGTTTGAATAGATTTTAAGCTAAAAATCAAGAAAATCGACCTAGGATTACTGTAGATAGTGATTTCGATGCATTTTTCAGATACAGTAGAGTGGTTTCGACCCAAAAATCCGGAATTTTTAACGAATTTCAGGCCAGAAATCAAGAAAATTGAACCAGGATTACTGTAGATGGACCTCAACCAGTTGTCAATGGATTTGGATGATTTTCAAGCTAAAAATCAGGATTCCCCTTGGGTTTTGAGGAATTTGGAGCCACAAAACGAGGAAATTGAGCTAGGATTACTGTAGCTACCCCTTTATGATGATCTTCGATGCTATTGCTCATTTCAAAACCTACAGTATTCCTCCCATTTCATTTTCAGGTCTCAAGGCCCCATTTTAAACCTAAAATAGTCAATTTTCAGGATATTGCTCATTTCAAAGACTACAGTATCCCTCTCGCTTCAAACTATGCCGAAAATTAGGAAGGTTGATCTAGGATTACTGTAGATCGCCCATTTTCGAGCTCTCCAACACCTATTGCTCATTTTCAAAGCTACAGTACCCCACTAAACGCCATTTTGACCCCCAAATTCTGGTTTTCAAAGTTATTGCTCATTTTCAAAAGCTACAGTAACCCTTTTAACTGAGCAAATTGCTCATTCTTAATTCCAAAACTACCGTACCCCCTGATAATAGCCTTAAATAAGTTAAAATAATCCGAAATCGCCCATTTTCAAGCTTTAGAACCTCCTAAACCCCTAGTTTTCGACCCATTGCTCATTCTTAAAGCTACAGTACCCCTTCTAATCGCCCAAACCCGTTTAAAGTCACAAAAATGGCTTGTTTCTGGCTATTGCTCGTTCTCAAAGCTACAGTATCC</canonical>
            <polymorphic>CCTATTTCTACTCCAATATTTTCGGCAATTTTTGTACTCATGTAAGGTGACAAAGATAGCAAATTTGACCGTATCCACGTCAATTATCATGCATCTTCATCAGTGCAAGAATGGCCTTTTTTGGACATATTCTGGCAGGTTTGAATAGATTTTAAGCTAAAAATCAAGAAAATCGACCTAGGATTACTGTAGATAGTGATTTCGATGCATTTTTCAGATACAGTAGAGTGGTTTCGACCCAAAAATCCGGAATTTTTAACGAATTTCAGGCCAGAAATCAAGAAAATTGAACCAGGATTACTGTAGATGGACCTCAACCAGTTGTCAATGGATTTGGATGATTTTCAAGCTAAAAATCAGGATTCCCCTTGGGTTTTGAGGAATTTGGAGCCACAAAACGAGGAAATTGAGCTAGGATTACTGTAGCTACCCCTTTATGATGATCTTCGATGCTATTGCTCATTTCAAAACCTACAGTATTCCTCCCATTTCATTTTCASGTCTCAAGGCCCCATTTTAAACCTAAAATAGTCAATTTTCAGGATATTGCTCATTTCAAAGACTACAGTATCCCTCTCGCTTCAAACTATGCCGAAAATTAGGAAGGTTGATCTAGGATTACTGTAGATCGCCCATTTTCGAGCTCTCCAACACCTATTGCTCATTTTCAAAGCTACAGTACCCCACTAAACGCCATTTTGACCCCCAAATTCTGGTTTTCAAAGTTATTGCTCATTTTCAAAAGCTACAGTAACCCTTTTAACTGAGCAAATTGCTCATTCTTAATTCCAAAACTACCGTACCCCCTGATAATAGCCTTAAATAAGTTAAAATAATCCGAAATCGCCCATTTTCAAGCTTTAGAACCTCCTAAACCCCTAGTTTTCGACCCATTGCTCATTCTTAAAGCTACAGTACCCCTTCTAATCGCCCAAACCCGTTTAAAGTCACAAAAATGGCTTGTTTCTGGCTATTGCTCGTTCTCAAAGCTACAGTATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGCTACCCCTTTATGATGATCT</pcr_primer_p1>
		<pcr_primer_p2>GTAGCTTTGAAAATGAGCAATAG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TAGCTACCCCTTTATGATGATCTTCGATGCTATTGCTCATTTCAAAACCTACAGTATTCCTCCCATTTCATTTTCAGGTCTCAAGGCCCCATTTTAAACCTAAAATAGTCAATTTTCAGGATATTGCTCATTTCAAAGACTACAGTATCCCTCTCGCTTCAAACTATGCCGAAAATTAGGAAGGTTGATCTAGGATTACTGTAGATCGCCCATTTTCGAGCTCTCCAACACCTATTGCTCATTTTCAAAGCTAC</canonical_amplicon>
		<polymorphic_amplicon>TAGCTACCCCTTTATGATGATCTTCGATGCTATTGCTCATTTCAAAACCTACAGTATTCCTCCCATTTCATTTTCASGTCTCAAGGCCCCATTTTAAACCTAAAATAGTCAATTTTCAGGATATTGCTCATTTCAAAGACTACAGTATCCCTCTCGCTTCAAACTATGCCGAAAATTAGGAAGGTTGATCTAGGATTACTGTAGATCGCCCATTTTCGAGCTCTCCAACACCTATTGCTCATTTTCAAAGCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32441</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>63439</contig_pos>
        <strand></strand>
        <context>CAGTATCCCT[C/T]TCGCTTCAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATAGTCAATTTTCAGGATATTGCTCATTTCAAAGACTACAGTATCCCT</left_flank>
        <right_flank>TCGCTTCAAACTATGCCGAAAATTAGGAAGGTTGATCTAGGATTACTGTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGTCAATTATCATGCATCTTCATCAGTGCAAGAATGGCCTTTTTTGGACATATTCTGGCAGGTTTGAATAGATTTTAAGCTAAAAATCAAGAAAATCGACCTAGGATTACTGTAGATAGTGATTTCGATGCATTTTTCAGATACAGTAGAGTGGTTTCGACCCAAAAATCCGGAATTTTTAACGAATTTCAGGCCAGAAATCAAGAAAATTGAACCAGGATTACTGTAGATGGACCTCAACCAGTTGTCAATGGATTTGGATGATTTTCAAGCTAAAAATCAGGATTCCCCTTGGGTTTTGAGGAATTTGGAGCCACAAAACGAGGAAATTGAGCTAGGATTACTGTAGCTACCCCTTTATGATGATCTTCGATGCTATTGCTCATTTCAAAACCTACAGTATTCCTCCCATTTCATTTTCAGGTCTCAAGGCCCCATTTTAAACCTAAAATAGTCAATTTTCAGGATATTGCTCATTTCAAAGACTACAGTATCCCTCTCGCTTCAAACTATGCCGAAAATTAGGAAGGTTGATCTAGGATTACTGTAGATCGCCCATTTTCGAGCTCTCCAACACCTATTGCTCATTTTCAAAGCTACAGTACCCCACTAAACGCCATTTTGACCCCCAAATTCTGGTTTTCAAAGTTATTGCTCATTTTCAAAAGCTACAGTAACCCTTTTAACTGAGCAAATTGCTCATTCTTAATTCCAAAACTACCGTACCCCCTGATAATAGCCTTAAATAAGTTAAAATAATCCGAAATCGCCCATTTTCAAGCTTTAGAACCTCCTAAACCCCTAGTTTTCGACCCATTGCTCATTCTTAAAGCTACAGTACCCCTTCTAATCGCCCAAACCCGTTTAAAGTCACAAAAATGGCTTGTTTCTGGCTATTGCTCGTTCTCAAAGCTACAGTATCCCTTTAACAAAATTTCAAGCATTTTTTGAGCTCTCCAATCCTCATTGCTCATTTTCCAAGCTACAGTATCCCAACAC</canonical>
            <polymorphic>ACGTCAATTATCATGCATCTTCATCAGTGCAAGAATGGCCTTTTTTGGACATATTCTGGCAGGTTTGAATAGATTTTAAGCTAAAAATCAAGAAAATCGACCTAGGATTACTGTAGATAGTGATTTCGATGCATTTTTCAGATACAGTAGAGTGGTTTCGACCCAAAAATCCGGAATTTTTAACGAATTTCAGGCCAGAAATCAAGAAAATTGAACCAGGATTACTGTAGATGGACCTCAACCAGTTGTCAATGGATTTGGATGATTTTCAAGCTAAAAATCAGGATTCCCCTTGGGTTTTGAGGAATTTGGAGCCACAAAACGAGGAAATTGAGCTAGGATTACTGTAGCTACCCCTTTATGATGATCTTCGATGCTATTGCTCATTTCAAAACCTACAGTATTCCTCCCATTTCATTTTCAGGTCTCAAGGCCCCATTTTAAACCTAAAATAGTCAATTTTCAGGATATTGCTCATTTCAAAGACTACAGTATCCCTYTCGCTTCAAACTATGCCGAAAATTAGGAAGGTTGATCTAGGATTACTGTAGATCGCCCATTTTCGAGCTCTCCAACACCTATTGCTCATTTTCAAAGCTACAGTACCCCACTAAACGCCATTTTGACCCCCAAATTCTGGTTTTCAAAGTTATTGCTCATTTTCAAAAGCTACAGTAACCCTTTTAACTGAGCAAATTGCTCATTCTTAATTCCAAAACTACCGTACCCCCTGATAATAGCCTTAAATAAGTTAAAATAATCCGAAATCGCCCATTTTCAAGCTTTAGAACCTCCTAAACCCCTAGTTTTCGACCCATTGCTCATTCTTAAAGCTACAGTACCCCTTCTAATCGCCCAAACCCGTTTAAAGTCACAAAAATGGCTTGTTTCTGGCTATTGCTCGTTCTCAAAGCTACAGTATCCCTTTAACAAAATTTCAAGCATTTTTTGAGCTCTCCAATCCTCATTGCTCATTTTCCAAGCTACAGTATCCCAACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCATTTTAAACCTAAAATAGTCA</pcr_primer_p1>
		<pcr_primer_p2>AAAGGGTTACTGTAGCTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCCATTTTAAACCTAAAATAGTCAATTTTCAGGATATTGCTCATTTCAAAGACTACAGTATCCCTCTCGCTTCAAACTATGCCGAAAATTAGGAAGGTTGATCTAGGATTACTGTAGATCGCCCATTTTCGAGCTCTCCAACACCTATTGCTCATTTTCAAAGCTACAGTACCCCACTAAACGCCATTTTGACCCCCAAATTCTGGTTTTCAAAGTTATTGCTCATTTTCAAAAGCTACAGTAACCCTTT</canonical_amplicon>
		<polymorphic_amplicon>CCCATTTTAAACCTAAAATAGTCAATTTTCAGGATATTGCTCATTTCAAAGACTACAGTATCCCTYTCGCTTCAAACTATGCCGAAAATTAGGAAGGTTGATCTAGGATTACTGTAGATCGCCCATTTTCGAGCTCTCCAACACCTATTGCTCATTTTCAAAGCTACAGTACCCCACTAAACGCCATTTTGACCCCCAAATTCTGGTTTTCAAAGTTATTGCTCATTTTCAAAAGCTACAGTAACCCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32442</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>63476</contig_pos>
        <strand>+</strand>
        <context>GAAGGTTGAT[G/T]TAGGATTACT</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTACAGTATCCCTCTCGCTTCAAACTATGCCGAAAATTAGGAAGGTTGAT</left_flank>
        <right_flank>TAGGATTACTGTAGATCGCCCATTTTCGAGCTCTCCAACACCTATTGCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCTTTTTTGGACATATTCTGGCAGGTTTGAATAGATTTTAAGCTAAAAATCAAGAAAATCGACCTAGGATTACTGTAGATAGTGATTTCGATGCATTTTTCAGATACAGTAGAGTGGTTTCGACCCAAAAATCCGGAATTTTTAACGAATTTCAGGCCAGAAATCAAGAAAATTGAACCAGGATTACTGTAGATGGACCTCAACCAGTTGTCAATGGATTTGGATGATTTTCAAGCTAAAAATCAGGATTCCCCTTGGGTTTTGAGGAATTTGGAGCCACAAAACGAGGAAATTGAGCTAGGATTACTGTAGCTACCCCTTTATGATGATCTTCGATGCTATTGCTCATTTCAAAACCTACAGTATTCCTCCCATTTCATTTTCAGGTCTCAAGGCCCCATTTTAAACCTAAAATAGTCAATTTTCAGGATATTGCTCATTTCAAAGACTACAGTATCCCTCTCGCTTCAAACTATGCCGAAAATTAGGAAGGTTGATCTAGGATTACTGTAGATCGCCCATTTTCGAGCTCTCCAACACCTATTGCTCATTTTCAAAGCTACAGTACCCCACTAAACGCCATTTTGACCCCCAAATTCTGGTTTTCAAAGTTATTGCTCATTTTCAAAAGCTACAGTAACCCTTTTAACTGAGCAAATTGCTCATTCTTAATTCCAAAACTACCGTACCCCCTGATAATAGCCTTAAATAAGTTAAAATAATCCGAAATCGCCCATTTTCAAGCTTTAGAACCTCCTAAACCCCTAGTTTTCGACCCATTGCTCATTCTTAAAGCTACAGTACCCCTTCTAATCGCCCAAACCCGTTTAAAGTCACAAAAATGGCTTGTTTCTGGCTATTGCTCGTTCTCAAAGCTACAGTATCCCTTTAACAAAATTTCAAGCATTTTTTGAGCTCTCCAATCCTCATTGCTCATTTTCCAAGCTACAGTATCCCAACACACCCGTTTAAAGGCTCTCGAACTCTATTTTAATCCTC</canonical>
            <polymorphic>GCCTTTTTTGGACATATTCTGGCAGGTTTGAATAGATTTTAAGCTAAAAATCAAGAAAATCGACCTAGGATTACTGTAGATAGTGATTTCGATGCATTTTTCAGATACAGTAGAGTGGTTTCGACCCAAAAATCCGGAATTTTTAACGAATTTCAGGCCAGAAATCAAGAAAATTGAACCAGGATTACTGTAGATGGACCTCAACCAGTTGTCAATGGATTTGGATGATTTTCAAGCTAAAAATCAGGATTCCCCTTGGGTTTTGAGGAATTTGGAGCCACAAAACGAGGAAATTGAGCTAGGATTACTGTAGCTACCCCTTTATGATGATCTTCGATGCTATTGCTCATTTCAAAACCTACAGTATTCCTCCCATTTCATTTTCAGGTCTCAAGGCCCCATTTTAAACCTAAAATAGTCAATTTTCAGGATATTGCTCATTTCAAAGACTACAGTATCCCTCTCGCTTCAAACTATGCCGAAAATTAGGAAGGTTGATKTAGGATTACTGTAGATCGCCCATTTTCGAGCTCTCCAACACCTATTGCTCATTTTCAAAGCTACAGTACCCCACTAAACGCCATTTTGACCCCCAAATTCTGGTTTTCAAAGTTATTGCTCATTTTCAAAAGCTACAGTAACCCTTTTAACTGAGCAAATTGCTCATTCTTAATTCCAAAACTACCGTACCCCCTGATAATAGCCTTAAATAAGTTAAAATAATCCGAAATCGCCCATTTTCAAGCTTTAGAACCTCCTAAACCCCTAGTTTTCGACCCATTGCTCATTCTTAAAGCTACAGTACCCCTTCTAATCGCCCAAACCCGTTTAAAGTCACAAAAATGGCTTGTTTCTGGCTATTGCTCGTTCTCAAAGCTACAGTATCCCTTTAACAAAATTTCAAGCATTTTTTGAGCTCTCCAATCCTCATTGCTCATTTTCCAAGCTACAGTATCCCAACACACCCGTTTAAAGGCTCTCGAACTCTATTTTAATCCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>266 234 234 201 65</canonical_bands>
                <polymorphic_bands>467 234 234 65</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>487 328 168 17</canonical_bands>
                <polymorphic_bands>487 328 185</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCATTTTAAACCTAAAATAGTCA</pcr_primer_p1>
		<pcr_primer_p2>AAAGGGTTACTGTAGCTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCCATTTTAAACCTAAAATAGTCAATTTTCAGGATATTGCTCATTTCAAAGACTACAGTATCCCTCTCGCTTCAAACTATGCCGAAAATTAGGAAGGTTGATCTAGGATTACTGTAGATCGCCCATTTTCGAGCTCTCCAACACCTATTGCTCATTTTCAAAGCTACAGTACCCCACTAAACGCCATTTTGACCCCCAAATTCTGGTTTTCAAAGTTATTGCTCATTTTCAAAAGCTACAGTAACCCTTT</canonical_amplicon>
		<polymorphic_amplicon>CCCATTTTAAACCTAAAATAGTCAATTTTCAGGATATTGCTCATTTCAAAGACTACAGTATCCCTCTCGCTTCAAACTATGCCGAAAATTAGGAAGGTTGATKTAGGATTACTGTAGATCGCCCATTTTCGAGCTCTCCAACACCTATTGCTCATTTTCAAAGCTACAGTACCCCACTAAACGCCATTTTGACCCCCAAATTCTGGTTTTCAAAGTTATTGCTCATTTTCAAAAGCTACAGTAACCCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32443</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>63543</contig_pos>
        <strand></strand>
        <context>AAAGCTACAG[T/C]ACCCCRCTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CGCCCATTTTCGAGCTCTCCAACACCTATTGCTCATTTTCAAAGCTACAG</left_flank>
        <right_flank>ACCCCACTAAACGCCATTTTGACCCCCAAATTCTGGTTTTCAAAGTTATT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATTACTGTAGATAGTGATTTCGATGCATTTTTCAGATACAGTAGAGTGGTTTCGACCCAAAAATCCGGAATTTTTAACGAATTTCAGGCCAGAAATCAAGAAAATTGAACCAGGATTACTGTAGATGGACCTCAACCAGTTGTCAATGGATTTGGATGATTTTCAAGCTAAAAATCAGGATTCCCCTTGGGTTTTGAGGAATTTGGAGCCACAAAACGAGGAAATTGAGCTAGGATTACTGTAGCTACCCCTTTATGATGATCTTCGATGCTATTGCTCATTTCAAAACCTACAGTATTCCTCCCATTTCATTTTCAGGTCTCAAGGCCCCATTTTAAACCTAAAATAGTCAATTTTCAGGATATTGCTCATTTCAAAGACTACAGTATCCCTCTCGCTTCAAACTATGCCGAAAATTAGGAAGGTTGATCTAGGATTACTGTAGATCGCCCATTTTCGAGCTCTCCAACACCTATTGCTCATTTTCAAAGCTACAGTACCCCACTAAACGCCATTTTGACCCCCAAATTCTGGTTTTCAAAGTTATTGCTCATTTTCAAAAGCTACAGTAACCCTTTTAACTGAGCAAATTGCTCATTCTTAATTCCAAAACTACCGTACCCCCTGATAATAGCCTTAAATAAGTTAAAATAATCCGAAATCGCCCATTTTCAAGCTTTAGAACCTCCTAAACCCCTAGTTTTCGACCCATTGCTCATTCTTAAAGCTACAGTACCCCTTCTAATCGCCCAAACCCGTTTAAAGTCACAAAAATGGCTTGTTTCTGGCTATTGCTCGTTCTCAAAGCTACAGTATCCCTTTAACAAAATTTCAAGCATTTTTTGAGCTCTCCAATCCTCATTGCTCATTTTCCAAGCTACAGTATCCCAACACACCCGTTTAAAGGCTCTCGAACTCTATTTTAATCCTCCAATGGTGGATTTTAAGGTTATTGCTCATTTTCAAAGTTACAGTATGCCTTCTAATCGCCCCAACCC</canonical>
            <polymorphic>GGATTACTGTAGATAGTGATTTCGATGCATTTTTCAGATACAGTAGAGTGGTTTCGACCCAAAAATCCGGAATTTTTAACGAATTTCAGGCCAGAAATCAAGAAAATTGAACCAGGATTACTGTAGATGGACCTCAACCAGTTGTCAATGGATTTGGATGATTTTCAAGCTAAAAATCAGGATTCCCCTTGGGTTTTGAGGAATTTGGAGCCACAAAACGAGGAAATTGAGCTAGGATTACTGTAGCTACCCCTTTATGATGATCTTCGATGCTATTGCTCATTTCAAAACCTACAGTATTCCTCCCATTTCATTTTCAGGTCTCAAGGCCCCATTTTAAACCTAAAATAGTCAATTTTCAGGATATTGCTCATTTCAAAGACTACAGTATCCCTCTCGCTTCAAACTATGCCGAAAATTAGGAAGGTTGATCTAGGATTACTGTAGATCGCCCATTTTCGAGCTCTCCAACACCTATTGCTCATTTTCAAAGCTACAGYACCCCACTAAACGCCATTTTGACCCCCAAATTCTGGTTTTCAAAGTTATTGCTCATTTTCAAAAGCTACAGTAACCCTTTTAACTGAGCAAATTGCTCATTCTTAATTCCAAAACTACCGTACCCCCTGATAATAGCCTTAAATAAGTTAAAATAATCCGAAATCGCCCATTTTCAAGCTTTAGAACCTCCTAAACCCCTAGTTTTCGACCCATTGCTCATTCTTAAAGCTACAGTACCCCTTCTAATCGCCCAAACCCGTTTAAAGTCACAAAAATGGCTTGTTTCTGGCTATTGCTCGTTCTCAAAGCTACAGTATCCCTTTAACAAAATTTCAAGCATTTTTTGAGCTCTCCAATCCTCATTGCTCATTTTCCAAGCTACAGTATCCCAACACACCCGTTTAAAGGCTCTCGAACTCTATTTTAATCCTCCAATGGTGGATTTTAAGGTTATTGCTCATTTTCAAAGTTACAGTATGCCTTCTAATCGCCCCAACCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 264 121 115</canonical_bands>
                <polymorphic_bands>621 264 115</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>120 115 91 91 80 80 72 70 56 55 54 49 34 25 8</canonical_bands>
                <polymorphic_bands>127 120 115 91 91 80 80 70 56 54 49 34 25 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCATTTTAAACCTAAAATAGTCA</pcr_primer_p1>
		<pcr_primer_p2>AAAGGGTTACTGTAGCTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCCATTTTAAACCTAAAATAGTCAATTTTCAGGATATTGCTCATTTCAAAGACTACAGTATCCCTCTCGCTTCAAACTATGCCGAAAATTAGGAAGGTTGATCTAGGATTACTGTAGATCGCCCATTTTCGAGCTCTCCAACACCTATTGCTCATTTTCAAAGCTACAGTACCCCACTAAACGCCATTTTGACCCCCAAATTCTGGTTTTCAAAGTTATTGCTCATTTTCAAAAGCTACAGTAACCCTTT</canonical_amplicon>
		<polymorphic_amplicon>CCCATTTTAAACCTAAAATAGTCAATTTTCAGGATATTGCTCATTTCAAAGACTACAGTATCCCTCTCGCTTCAAACTATGCCGAAAATTAGGAAGGTTGATCTAGGATTACTGTAGATCGCCCATTTTCGAGCTCTCCAACACCTATTGCTCATTTTCAAAGCTACAGYACCCCACTAAACGCCATTTTGACCCCCAAATTCTGGTTTTCAAAGTTATTGCTCATTTTCAAAAGCTACAGTAACCCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32444</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>63549</contig_pos>
        <strand></strand>
        <context>ACAGYACCCC[A/G]CTAAACGCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCGAGCTCTCCAACACCTATTGCTCATTTTCAAAGCTACAGTACCCC</left_flank>
        <right_flank>CTAAACGCCATTTTGACCCCCAAATTCTGGTTTTCAAAGTTATTGCTCAT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTAGATAGTGATTTCGATGCATTTTTCAGATACAGTAGAGTGGTTTCGACCCAAAAATCCGGAATTTTTAACGAATTTCAGGCCAGAAATCAAGAAAATTGAACCAGGATTACTGTAGATGGACCTCAACCAGTTGTCAATGGATTTGGATGATTTTCAAGCTAAAAATCAGGATTCCCCTTGGGTTTTGAGGAATTTGGAGCCACAAAACGAGGAAATTGAGCTAGGATTACTGTAGCTACCCCTTTATGATGATCTTCGATGCTATTGCTCATTTCAAAACCTACAGTATTCCTCCCATTTCATTTTCAGGTCTCAAGGCCCCATTTTAAACCTAAAATAGTCAATTTTCAGGATATTGCTCATTTCAAAGACTACAGTATCCCTCTCGCTTCAAACTATGCCGAAAATTAGGAAGGTTGATCTAGGATTACTGTAGATCGCCCATTTTCGAGCTCTCCAACACCTATTGCTCATTTTCAAAGCTACAGTACCCCACTAAACGCCATTTTGACCCCCAAATTCTGGTTTTCAAAGTTATTGCTCATTTTCAAAAGCTACAGTAACCCTTTTAACTGAGCAAATTGCTCATTCTTAATTCCAAAACTACCGTACCCCCTGATAATAGCCTTAAATAAGTTAAAATAATCCGAAATCGCCCATTTTCAAGCTTTAGAACCTCCTAAACCCCTAGTTTTCGACCCATTGCTCATTCTTAAAGCTACAGTACCCCTTCTAATCGCCCAAACCCGTTTAAAGTCACAAAAATGGCTTGTTTCTGGCTATTGCTCGTTCTCAAAGCTACAGTATCCCTTTAACAAAATTTCAAGCATTTTTTGAGCTCTCCAATCCTCATTGCTCATTTTCCAAGCTACAGTATCCCAACACACCCGTTTAAAGGCTCTCGAACTCTATTTTAATCCTCCAATGGTGGATTTTAAGGTTATTGCTCATTTTCAAAGTTACAGTATGCCTTCTAATCGCCCCAACCCCTTTAT</canonical>
            <polymorphic>CTGTAGATAGTGATTTCGATGCATTTTTCAGATACAGTAGAGTGGTTTCGACCCAAAAATCCGGAATTTTTAACGAATTTCAGGCCAGAAATCAAGAAAATTGAACCAGGATTACTGTAGATGGACCTCAACCAGTTGTCAATGGATTTGGATGATTTTCAAGCTAAAAATCAGGATTCCCCTTGGGTTTTGAGGAATTTGGAGCCACAAAACGAGGAAATTGAGCTAGGATTACTGTAGCTACCCCTTTATGATGATCTTCGATGCTATTGCTCATTTCAAAACCTACAGTATTCCTCCCATTTCATTTTCAGGTCTCAAGGCCCCATTTTAAACCTAAAATAGTCAATTTTCAGGATATTGCTCATTTCAAAGACTACAGTATCCCTCTCGCTTCAAACTATGCCGAAAATTAGGAAGGTTGATCTAGGATTACTGTAGATCGCCCATTTTCGAGCTCTCCAACACCTATTGCTCATTTTCAAAGCTACAGTACCCCRCTAAACGCCATTTTGACCCCCAAATTCTGGTTTTCAAAGTTATTGCTCATTTTCAAAAGCTACAGTAACCCTTTTAACTGAGCAAATTGCTCATTCTTAATTCCAAAACTACCGTACCCCCTGATAATAGCCTTAAATAAGTTAAAATAATCCGAAATCGCCCATTTTCAAGCTTTAGAACCTCCTAAACCCCTAGTTTTCGACCCATTGCTCATTCTTAAAGCTACAGTACCCCTTCTAATCGCCCAAACCCGTTTAAAGTCACAAAAATGGCTTGTTTCTGGCTATTGCTCGTTCTCAAAGCTACAGTATCCCTTTAACAAAATTTCAAGCATTTTTTGAGCTCTCCAATCCTCATTGCTCATTTTCCAAGCTACAGTATCCCAACACACCCGTTTAAAGGCTCTCGAACTCTATTTTAATCCTCCAATGGTGGATTTTAAGGTTATTGCTCATTTTCAAAGTTACAGTATGCCTTCTAATCGCCCCAACCCCTTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>264 260 163 125 65 44 33 32 12 2</canonical_bands>
                <polymorphic_bands>297 260 163 125 65 44 32 12 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCATTTTAAACCTAAAATAGTCA</pcr_primer_p1>
		<pcr_primer_p2>AAAGGGTTACTGTAGCTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCCATTTTAAACCTAAAATAGTCAATTTTCAGGATATTGCTCATTTCAAAGACTACAGTATCCCTCTCGCTTCAAACTATGCCGAAAATTAGGAAGGTTGATCTAGGATTACTGTAGATCGCCCATTTTCGAGCTCTCCAACACCTATTGCTCATTTTCAAAGCTACAGTACCCCACTAAACGCCATTTTGACCCCCAAATTCTGGTTTTCAAAGTTATTGCTCATTTTCAAAAGCTACAGTAACCCTTT</canonical_amplicon>
		<polymorphic_amplicon>CCCATTTTAAACCTAAAATAGTCAATTTTCAGGATATTGCTCATTTCAAAGACTACAGTATCCCTCTCGCTTCAAACTATGCCGAAAATTAGGAAGGTTGATCTAGGATTACTGTAGATCGCCCATTTTCGAGCTCTCCAACACCTATTGCTCATTTTCAAAGCTACAGTACCCCRCTAAACGCCATTTTGACCCCCAAATTCTGGTTTTCAAAGTTATTGCTCATTTTCAAAAGCTACAGTAACCCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32445</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>63600</contig_pos>
        <strand>+</strand>
        <context>TATTGCTCAT[G/T]TTCAAAAGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTAAACGCCATTTTGACCCCCAAATTCTGGTTTTCAAAGTTATTGCTCAT</left_flank>
        <right_flank>TTCAAAAGCTACAGTAACCCTTTTAACTGAGCAAATTGCTCATTCTTAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCAAAAATCCGGAATTTTTAACGAATTTCAGGCCAGAAATCAAGAAAATTGAACCAGGATTACTGTAGATGGACCTCAACCAGTTGTCAATGGATTTGGATGATTTTCAAGCTAAAAATCAGGATTCCCCTTGGGTTTTGAGGAATTTGGAGCCACAAAACGAGGAAATTGAGCTAGGATTACTGTAGCTACCCCTTTATGATGATCTTCGATGCTATTGCTCATTTCAAAACCTACAGTATTCCTCCCATTTCATTTTCAGGTCTCAAGGCCCCATTTTAAACCTAAAATAGTCAATTTTCAGGATATTGCTCATTTCAAAGACTACAGTATCCCTCTCGCTTCAAACTATGCCGAAAATTAGGAAGGTTGATCTAGGATTACTGTAGATCGCCCATTTTCGAGCTCTCCAACACCTATTGCTCATTTTCAAAGCTACAGTACCCCACTAAACGCCATTTTGACCCCCAAATTCTGGTTTTCAAAGTTATTGCTCATTTTCAAAAGCTACAGTAACCCTTTTAACTGAGCAAATTGCTCATTCTTAATTCCAAAACTACCGTACCCCCTGATAATAGCCTTAAATAAGTTAAAATAATCCGAAATCGCCCATTTTCAAGCTTTAGAACCTCCTAAACCCCTAGTTTTCGACCCATTGCTCATTCTTAAAGCTACAGTACCCCTTCTAATCGCCCAAACCCGTTTAAAGTCACAAAAATGGCTTGTTTCTGGCTATTGCTCGTTCTCAAAGCTACAGTATCCCTTTAACAAAATTTCAAGCATTTTTTGAGCTCTCCAATCCTCATTGCTCATTTTCCAAGCTACAGTATCCCAACACACCCGTTTAAAGGCTCTCGAACTCTATTTTAATCCTCCAATGGTGGATTTTAAGGTTATTGCTCATTTTCAAAGTTACAGTATGCCTTCTAATCGCCCCAACCCCTTTATAATCCCAAAAAAAAGCTTGTTTCTGGGTATTGCTCATTCTCAAAGCTACAG</canonical>
            <polymorphic>CCCAAAAATCCGGAATTTTTAACGAATTTCAGGCCAGAAATCAAGAAAATTGAACCAGGATTACTGTAGATGGACCTCAACCAGTTGTCAATGGATTTGGATGATTTTCAAGCTAAAAATCAGGATTCCCCTTGGGTTTTGAGGAATTTGGAGCCACAAAACGAGGAAATTGAGCTAGGATTACTGTAGCTACCCCTTTATGATGATCTTCGATGCTATTGCTCATTTCAAAACCTACAGTATTCCTCCCATTTCATTTTCAGGTCTCAAGGCCCCATTTTAAACCTAAAATAGTCAATTTTCAGGATATTGCTCATTTCAAAGACTACAGTATCCCTCTCGCTTCAAACTATGCCGAAAATTAGGAAGGTTGATCTAGGATTACTGTAGATCGCCCATTTTCGAGCTCTCCAACACCTATTGCTCATTTTCAAAGCTACAGTACCCCACTAAACGCCATTTTGACCCCCAAATTCTGGTTTTCAAAGTTATTGCTCATKTTCAAAAGCTACAGTAACCCTTTTAACTGAGCAAATTGCTCATTCTTAATTCCAAAACTACCGTACCCCCTGATAATAGCCTTAAATAAGTTAAAATAATCCGAAATCGCCCATTTTCAAGCTTTAGAACCTCCTAAACCCCTAGTTTTCGACCCATTGCTCATTCTTAAAGCTACAGTACCCCTTCTAATCGCCCAAACCCGTTTAAAGTCACAAAAATGGCTTGTTTCTGGCTATTGCTCGTTCTCAAAGCTACAGTATCCCTTTAACAAAATTTCAAGCATTTTTTGAGCTCTCCAATCCTCATTGCTCATTTTCCAAGCTACAGTATCCCAACACACCCGTTTAAAGGCTCTCGAACTCTATTTTAATCCTCCAATGGTGGATTTTAAGGTTATTGCTCATTTTCAAAGTTACAGTATGCCTTCTAATCGCCCCAACCCCTTTATAATCCCAAAAAAAAGCTTGTTTCTGGGTATTGCTCATTCTCAAAGCTACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTGCTCATTTTCAAAGCTAC</pcr_primer_p1>
		<pcr_primer_p2>AAAACTAGGGGTTTAGGAGGT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>CTATTGCTCATTTTCAAAGCTACAGTACCCCACTAAACGCCATTTTGACCCCCAAATTCTGGTTTTCAAAGTTATTGCTCATTTTCAAAAGCTACAGTAACCCTTTTAACTGAGCAAATTGCTCATTCTTAATTCCAAAACTACCGTACCCCCTGATAATAGCCTTAAATAAGTTAAAATAATCCGAAATCGCCCATTTTCAAGCTTTAGAACCTCCTAAACCCCTAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>CTATTGCTCATTTTCAAAGCTACAGTACCCCACTAAACGCCATTTTGACCCCCAAATTCTGGTTTTCAAAGTTATTGCTCATKTTCAAAAGCTACAGTAACCCTTTTAACTGAGCAAATTGCTCATTCTTAATTCCAAAACTACCGTACCCCCTGATAATAGCCTTAAATAAGTTAAAATAATCCGAAATCGCCCATTTTCAAGCTTTAGAACCTCCTAAACCCCTAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32446</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>63647</contig_pos>
        <strand>+</strand>
        <context>TGCTCATTCT[C/T]AATTCCAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATTTTCAAAAGCTACAGTAACCCTTTTAACTGAGCAAATTGCTCATTCT</left_flank>
        <right_flank>AATTCCAAAACTACCGTACCCCCTGATAATAGCCTTAAATAAGTTAAAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGAACCAGGATTACTGTAGATGGACCTCAACCAGTTGTCAATGGATTTGGATGATTTTCAAGCTAAAAATCAGGATTCCCCTTGGGTTTTGAGGAATTTGGAGCCACAAAACGAGGAAATTGAGCTAGGATTACTGTAGCTACCCCTTTATGATGATCTTCGATGCTATTGCTCATTTCAAAACCTACAGTATTCCTCCCATTTCATTTTCAGGTCTCAAGGCCCCATTTTAAACCTAAAATAGTCAATTTTCAGGATATTGCTCATTTCAAAGACTACAGTATCCCTCTCGCTTCAAACTATGCCGAAAATTAGGAAGGTTGATCTAGGATTACTGTAGATCGCCCATTTTCGAGCTCTCCAACACCTATTGCTCATTTTCAAAGCTACAGTACCCCACTAAACGCCATTTTGACCCCCAAATTCTGGTTTTCAAAGTTATTGCTCATTTTCAAAAGCTACAGTAACCCTTTTAACTGAGCAAATTGCTCATTCTTAATTCCAAAACTACCGTACCCCCTGATAATAGCCTTAAATAAGTTAAAATAATCCGAAATCGCCCATTTTCAAGCTTTAGAACCTCCTAAACCCCTAGTTTTCGACCCATTGCTCATTCTTAAAGCTACAGTACCCCTTCTAATCGCCCAAACCCGTTTAAAGTCACAAAAATGGCTTGTTTCTGGCTATTGCTCGTTCTCAAAGCTACAGTATCCCTTTAACAAAATTTCAAGCATTTTTTGAGCTCTCCAATCCTCATTGCTCATTTTCCAAGCTACAGTATCCCAACACACCCGTTTAAAGGCTCTCGAACTCTATTTTAATCCTCCAATGGTGGATTTTAAGGTTATTGCTCATTTTCAAAGTTACAGTATGCCTTCTAATCGCCCCAACCCCTTTATAATCCCAAAAAAAAGCTTGTTTCTGGGTATTGCTCATTCTCAAAGCTACAGTACCCTACCAAATCCCATTTCTCGGACTCTCCAACCCCCCCCCCCCA</canonical>
            <polymorphic>AATTGAACCAGGATTACTGTAGATGGACCTCAACCAGTTGTCAATGGATTTGGATGATTTTCAAGCTAAAAATCAGGATTCCCCTTGGGTTTTGAGGAATTTGGAGCCACAAAACGAGGAAATTGAGCTAGGATTACTGTAGCTACCCCTTTATGATGATCTTCGATGCTATTGCTCATTTCAAAACCTACAGTATTCCTCCCATTTCATTTTCAGGTCTCAAGGCCCCATTTTAAACCTAAAATAGTCAATTTTCAGGATATTGCTCATTTCAAAGACTACAGTATCCCTCTCGCTTCAAACTATGCCGAAAATTAGGAAGGTTGATCTAGGATTACTGTAGATCGCCCATTTTCGAGCTCTCCAACACCTATTGCTCATTTTCAAAGCTACAGTACCCCACTAAACGCCATTTTGACCCCCAAATTCTGGTTTTCAAAGTTATTGCTCATTTTCAAAAGCTACAGTAACCCTTTTAACTGAGCAAATTGCTCATTCTYAATTCCAAAACTACCGTACCCCCTGATAATAGCCTTAAATAAGTTAAAATAATCCGAAATCGCCCATTTTCAAGCTTTAGAACCTCCTAAACCCCTAGTTTTCGACCCATTGCTCATTCTTAAAGCTACAGTACCCCTTCTAATCGCCCAAACCCGTTTAAAGTCACAAAAATGGCTTGTTTCTGGCTATTGCTCGTTCTCAAAGCTACAGTATCCCTTTAACAAAATTTCAAGCATTTTTTGAGCTCTCCAATCCTCATTGCTCATTTTCCAAGCTACAGTATCCCAACACACCCGTTTAAAGGCTCTCGAACTCTATTTTAATCCTCCAATGGTGGATTTTAAGGTTATTGCTCATTTTCAAAGTTACAGTATGCCTTCTAATCGCCCCAACCCCTTTATAATCCCAAAAAAAAGCTTGTTTCTGGGTATTGCTCATTCTCAAAGCTACAGTACCCTACCAAATCCCATTTCTCGGACTCTCCAACCCCCCCCCCCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>243 233 158 80 76 61 38 36 23 22 21 9</canonical_bands>
                <polymorphic_bands>243 233 158 80 76 61 59 38 22 21 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTTCAAAGTTATTGCTCAT</pcr_primer_p1>
		<pcr_primer_p2>CAAGCCATTTTTGTGACTTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTTTTCAAAGTTATTGCTCATTTTCAAAAGCTACAGTAACCCTTTTAACTGAGCAAATTGCTCATTCTTAATTCCAAAACTACCGTACCCCCTGATAATAGCCTTAAATAAGTTAAAATAATCCGAAATCGCCCATTTTCAAGCTTTAGAACCTCCTAAACCCCTAGTTTTCGACCCATTGCTCATTCTTAAAGCTACAGTACCCCTTCTAATCGCCCAAACCCGTTTAAAGTCACAAAAATGGCTTG</canonical_amplicon>
		<polymorphic_amplicon>GGTTTTCAAAGTTATTGCTCATTTTCAAAAGCTACAGTAACCCTTTTAACTGAGCAAATTGCTCATTCTYAATTCCAAAACTACCGTACCCCCTGATAATAGCCTTAAATAAGTTAAAATAATCCGAAATCGCCCATTTTCAAGCTTTAGAACCTCCTAAACCCCTAGTTTTCGACCCATTGCTCATTCTTAAAGCTACAGTACCCCTTCTAATCGCCCAAACCCGTTTAAAGTCACAAAAATGGCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32447</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>64964</contig_pos>
        <strand>+</strand>
        <context>acttTTTTTT[G/T]AGCTTTTCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAACAGCCCAAAATAGGCCAAAAATGAGTCTGAAAATTGACTTTTTTTT</left_flank>
        <right_flank>AGCTTTTCCGCGATTGCTCATCTTTAATTTTCGAATTTCAAAACTACCGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAAGTTTCCGAGTCGCCTTTTTGATGACGTCATCTGCCAGAATCTCGGGTCCAATCAAGAAGAGCTCCGCGAGATGGATATAGAAGTCGTTGGGCTCGGCGAACGCGAAGAACGCCGATCTACGCTCCGCCCACAGCATATAGGTCCACAGAATCGATAGTCGACAGATCTCCACGTCATCCTGGGACACGTGGCCTTGTCGTCGTTCTACAGTATCCAGCACGCGGCGGATGGGGATCAGGGACCAGCATTGGTCTAGGATTGGGTTCACGCCCTTCCCGAACTCATAGATGACCTGATGGCCGTCGGAATGCTCTTCCAGATAGAGCCGCTTGATTTCGTCGATTTGCGAGCGAGCCAGCTCCAGGAGAGCATCCGAGGGGCTGAAAATCGATTCAGATAGGTTGAAAGCACCGAAATTCGGCTGAAAATCGTGAAAAATAGCTTAAAACAGCCCAAAATAGGCCAAAAATGAGTCTGAAAATTGACTTTTTTTTTAGCTTTTCCGCGATTGCTCATCTTTAATTTTCGAATTTCAAAACTACCGTACTCCTAAACATGGCTCAAAATAGCTTAAAATATGCCTGAAACGCGCAAATTTGATTTAAAATCGTCCAAAAAATCAACTAGAAATGATCTGGCATAGCTTTAAAGCGATTGCTCAGTCTTAAAACTACAGTACCCCTCCAGAAGAGCGTCGGAGGGGCTGAAAATTGGGCTGAAATCGGTCGAAAATGACTGGAAATTGACATTTTTTAGCTTTTCCGTGATTGCTCATGCTTAATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGC</canonical>
            <polymorphic>CAGAAGTTTCCGAGTCGCCTTTTTGATGACGTCATCTGCCAGAATCTCGGGTCCAATCAAGAAGAGCTCCGCGAGATGGATATAGAAGTCGTTGGGCTCGGCGAACGCGAAGAACGCCGATCTACGCTCCGCCCACAGCATATAGGTCCACAGAATCGATAGTCGACAGATCTCCACGTCATCCTGGGACACGTGGCCTTGTCGTCGTTCTACAGTATCCAGCACGCGGCGGATGGGGATCAGGGACCAGCATTGGTCTAGGATTGGGTTCACGCCCTTCCCGAACTCATAGATGACCTGATGGCCGTCGGAATGCTCTTCCAGATAGAGCCGCTTGATTTCGTCGATTTGCGAGCGAGCCAGCTCCAGGAGAGCATCCGAGGGGCTGAAAATCGATTCAGATAGGTTGAAAGCACCGAAATTCGGCTGAAAATCGTGAAAAATAGCTTAAAACAGCCCAAAATAGGCCAAAAATGAGTCTGAAAATTGACTTTTTTTTKAGCTTTTCCGCGATTGCTCATCTTTAATTTTCGAATTTCAAAACTACCGTACTCCTAAACATGGCTCAAAATAGCTTAAAATATGCCTGAAACGCGCAAATTTGATTTAAAATCGTCCAAAAAATCAACTAGAAATGATCTGGCATAGCTTTAAAGCGATTGCTCAGTCTTAAAACTACAGTACCCCTCCAGAAGAGCGTCGGAGGGGCTGAAAATTGGGCTGAAATCGGTCGAAAATGACTGGAAATTGACATTTTTTAGCTTTTCCGTGATTGCTCATGCTTAATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATAGAGCCGCTTGATTTC</pcr_primer_p1>
		<pcr_primer_p2>CTGGAGGGGTACTGTAGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>370</pcr_amplicon_size>
		<canonical_amplicon>AGATAGAGCCGCTTGATTTCGTCGATTTGCGAGCGAGCCAGCTCCAGGAGAGCATCCGAGGGGCTGAAAATCGATTCAGATAGGTTGAAAGCACCGAAATTCGGCTGAAAATCGTGAAAAATAGCTTAAAACAGCCCAAAATAGGCCAAAAATGAGTCTGAAAATTGACTTTTTTTTTAGCTTTTCCGCGATTGCTCATCTTTAATTTTCGAATTTCAAAACTACCGTACTCCTAAACATGGCTCAAAATAGCTTAAAATATGCCTGAAACGCGCAAATTTGATTTAAAATCGTCCAAAAAATCAACTAGAAATGATCTGGCATAGCTTTAAAGCGATTGCTCAGTCTTAAAACTACAGTACCCCTCCAG</canonical_amplicon>
		<polymorphic_amplicon>AGATAGAGCCGCTTGATTTCGTCGATTTGCGAGCGAGCCAGCTCCAGGAGAGCATCCGAGGGGCTGAAAATCGATTCAGATAGGTTGAAAGCACCGAAATTCGGCTGAAAATCGTGAAAAATAGCTTAAAACAGCCCAAAATAGGCCAAAAATGAGTCTGAAAATTGACTTTTTTTTKAGCTTTTCCGCGATTGCTCATCTTTAATTTTCGAATTTCAAAACTACCGTACTCCTAAACATGGCTCAAAATAGCTTAAAATATGCCTGAAACGCGCAAATTTGATTTAAAATCGTCCAAAAAATCAACTAGAAATGATCTGGCATAGCTTTAAAGCGATTGCTCAGTCTTAAAACTACAGTACCCCTCCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32448</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>65349</contig_pos>
        <strand></strand>
        <context>ctgaaaatcg[G/A]tcaaaaaaga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCG</left_flank>
        <right_flank>TCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAAAATCGATTCAGATAGGTTGAAAGCACCGAAATTCGGCTGAAAATCGTGAAAAATAGCTTAAAACAGCCCAAAATAGGCCAAAAATGAGTCTGAAAATTGACTTTTTTTTTAGCTTTTCCGCGATTGCTCATCTTTAATTTTCGAATTTCAAAACTACCGTACTCCTAAACATGGCTCAAAATAGCTTAAAATATGCCTGAAACGCGCAAATTTGATTTAAAATCGTCCAAAAAATCAACTAGAAATGATCTGGCATAGCTTTAAAGCGATTGCTCAGTCTTAAAACTACAGTACCCCTCCAGAAGAGCGTCGGAGGGGCTGAAAATTGGGCTGAAATCGGTCGAAAATGACTGGAAATTGACATTTTTTAGCTTTTCCGTGATTGCTCATGCTTAATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGT</canonical>
            <polymorphic>CTGAAAATCGATTCAGATAGGTTGAAAGCACCGAAATTCGGCTGAAAATCGTGAAAAATAGCTTAAAACAGCCCAAAATAGGCCAAAAATGAGTCTGAAAATTGACTTTTTTTTTAGCTTTTCCGCGATTGCTCATCTTTAATTTTCGAATTTCAAAACTACCGTACTCCTAAACATGGCTCAAAATAGCTTAAAATATGCCTGAAACGCGCAAATTTGATTTAAAATCGTCCAAAAAATCAACTAGAAATGATCTGGCATAGCTTTAAAGCGATTGCTCAGTCTTAAAACTACAGTACCCCTCCAGAAGAGCGTCGGAGGGGCTGAAAATTGGGCTGAAATCGGTCGAAAATGACTGGAAATTGACATTTTTTAGCTTTTCCGTGATTGCTCATGCTTAATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGRTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTACAGTACCCCTCCAGAA</pcr_primer_p1>
		<pcr_primer_p2>GAGAAATTTAGGATGAGCAATC</pcr_primer_p2>
		<pcr_amplicon_size>763</pcr_amplicon_size>
		<canonical_amplicon>AACTACAGTACCCCTCCAGAAGAGCGTCGGAGGGGCTGAAAATTGGGCTGAAATCGGTCGAAAATGACTGGAAATTGACATTTTTTAGCTTTTCCGTGATTGCTCATGCTTAATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGAT</canonical_amplicon>
		<polymorphic_amplicon>AACTACAGTACCCCTCCAGAAGAGCGTCGGAGGGGCTGAAAATTGGGCTGAAATCGGTCGAAAATGACTGGAAATTGACATTTTTTAGCTTTTCCGTGATTGCTCATGCTTAATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGRTCAAAAAAGAGCCTAAATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32449</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>65402</contig_pos>
        <strand>+</strand>
        <context>gatttttgag[C/T]ttttycgcga</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAG</left_flank>
        <right_flank>TTTTTCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATAGCTTAAAACAGCCCAAAATAGGCCAAAAATGAGTCTGAAAATTGACTTTTTTTTTAGCTTTTCCGCGATTGCTCATCTTTAATTTTCGAATTTCAAAACTACCGTACTCCTAAACATGGCTCAAAATAGCTTAAAATATGCCTGAAACGCGCAAATTTGATTTAAAATCGTCCAAAAAATCAACTAGAAATGATCTGGCATAGCTTTAAAGCGATTGCTCAGTCTTAAAACTACAGTACCCCTCCAGAAGAGCGTCGGAGGGGCTGAAAATTGGGCTGAAATCGGTCGAAAATGACTGGAAATTGACATTTTTTAGCTTTTCCGTGATTGCTCATGCTTAATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTCAA</canonical>
            <polymorphic>AAAAATAGCTTAAAACAGCCCAAAATAGGCCAAAAATGAGTCTGAAAATTGACTTTTTTTTTAGCTTTTCCGCGATTGCTCATCTTTAATTTTCGAATTTCAAAACTACCGTACTCCTAAACATGGCTCAAAATAGCTTAAAATATGCCTGAAACGCGCAAATTTGATTTAAAATCGTCCAAAAAATCAACTAGAAATGATCTGGCATAGCTTTAAAGCGATTGCTCAGTCTTAAAACTACAGTACCCCTCCAGAAGAGCGTCGGAGGGGCTGAAAATTGGGCTGAAATCGGTCGAAAATGACTGGAAATTGACATTTTTTAGCTTTTCCGTGATTGCTCATGCTTAATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGYTTTTTCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTACAGTACCCCTCCAGAA</pcr_primer_p1>
		<pcr_primer_p2>GAGAAATTTAGGATGAGCAATC</pcr_primer_p2>
		<pcr_amplicon_size>763</pcr_amplicon_size>
		<canonical_amplicon>AACTACAGTACCCCTCCAGAAGAGCGTCGGAGGGGCTGAAAATTGGGCTGAAATCGGTCGAAAATGACTGGAAATTGACATTTTTTAGCTTTTCCGTGATTGCTCATGCTTAATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTC</canonical_amplicon>
		<polymorphic_amplicon>AACTACAGTACCCCTCCAGAAGAGCGTCGGAGGGGCTGAAAATTGGGCTGAAATCGGTCGAAAATGACTGGAAATTGACATTTTTTAGCTTTTCCGTGATTGCTCATGCTTAATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGYTTTTTCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32450</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>65407</contig_pos>
        <strand>+</strand>
        <context>ttgagytttt[C/T]cgcgattgct</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTT</left_flank>
        <right_flank>CGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGCTTAAAACAGCCCAAAATAGGCCAAAAATGAGTCTGAAAATTGACTTTTTTTTTAGCTTTTCCGCGATTGCTCATCTTTAATTTTCGAATTTCAAAACTACCGTACTCCTAAACATGGCTCAAAATAGCTTAAAATATGCCTGAAACGCGCAAATTTGATTTAAAATCGTCCAAAAAATCAACTAGAAATGATCTGGCATAGCTTTAAAGCGATTGCTCAGTCTTAAAACTACAGTACCCCTCCAGAAGAGCGTCGGAGGGGCTGAAAATTGGGCTGAAATCGGTCGAAAATGACTGGAAATTGACATTTTTTAGCTTTTCCGTGATTGCTCATGCTTAATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTCAATTTCA</canonical>
            <polymorphic>TAGCTTAAAACAGCCCAAAATAGGCCAAAAATGAGTCTGAAAATTGACTTTTTTTTTAGCTTTTCCGCGATTGCTCATCTTTAATTTTCGAATTTCAAAACTACCGTACTCCTAAACATGGCTCAAAATAGCTTAAAATATGCCTGAAACGCGCAAATTTGATTTAAAATCGTCCAAAAAATCAACTAGAAATGATCTGGCATAGCTTTAAAGCGATTGCTCAGTCTTAAAACTACAGTACCCCTCCAGAAGAGCGTCGGAGGGGCTGAAAATTGGGCTGAAATCGGTCGAAAATGACTGGAAATTGACATTTTTTAGCTTTTCCGTGATTGCTCATGCTTAATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTYCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTCAATTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGCGA</site>
                <isoschizomers>
                    <enzyme>Bsp68I</enzyme>
                    <enzyme>NruI</enzyme>
                </isoschizomers>
                <canonical_bands>502 468 30</canonical_bands>
                <polymorphic_bands>970 30</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>468 255 246 31</canonical_bands>
                <polymorphic_bands>723 246 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTACAGTACCCCTCCAGAA</pcr_primer_p1>
		<pcr_primer_p2>GAGAAATTTAGGATGAGCAATC</pcr_primer_p2>
		<pcr_amplicon_size>763</pcr_amplicon_size>
		<canonical_amplicon>AACTACAGTACCCCTCCAGAAGAGCGTCGGAGGGGCTGAAAATTGGGCTGAAATCGGTCGAAAATGACTGGAAATTGACATTTTTTAGCTTTTCCGTGATTGCTCATGCTTAATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTC</canonical_amplicon>
		<polymorphic_amplicon>AACTACAGTACCCCTCCAGAAGAGCGTCGGAGGGGCTGAAAATTGGGCTGAAATCGGTCGAAAATGACTGGAAATTGACATTTTTTAGCTTTTCCGTGATTGCTCATGCTTAATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTYCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32451</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>65422</contig_pos>
        <strand>+</strand>
        <context>attgctcatc[C/T]ttaatttycr</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATC</left_flank>
        <right_flank>TTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAATAGGCCAAAAATGAGTCTGAAAATTGACTTTTTTTTTAGCTTTTCCGCGATTGCTCATCTTTAATTTTCGAATTTCAAAACTACCGTACTCCTAAACATGGCTCAAAATAGCTTAAAATATGCCTGAAACGCGCAAATTTGATTTAAAATCGTCCAAAAAATCAACTAGAAATGATCTGGCATAGCTTTAAAGCGATTGCTCAGTCTTAAAACTACAGTACCCCTCCAGAAGAGCGTCGGAGGGGCTGAAAATTGGGCTGAAATCGGTCGAAAATGACTGGAAATTGACATTTTTTAGCTTTTCCGTGATTGCTCATGCTTAATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTCAATTTCAAAACTACCGTACTCC</canonical>
            <polymorphic>CAAAATAGGCCAAAAATGAGTCTGAAAATTGACTTTTTTTTTAGCTTTTCCGCGATTGCTCATCTTTAATTTTCGAATTTCAAAACTACCGTACTCCTAAACATGGCTCAAAATAGCTTAAAATATGCCTGAAACGCGCAAATTTGATTTAAAATCGTCCAAAAAATCAACTAGAAATGATCTGGCATAGCTTTAAAGCGATTGCTCAGTCTTAAAACTACAGTACCCCTCCAGAAGAGCGTCGGAGGGGCTGAAAATTGGGCTGAAATCGGTCGAAAATGACTGGAAATTGACATTTTTTAGCTTTTCCGTGATTGCTCATGCTTAATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCYTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTCAATTTCAAAACTACCGTACTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTACAGTACCCCTCCAGAA</pcr_primer_p1>
		<pcr_primer_p2>GAGAAATTTAGGATGAGCAATC</pcr_primer_p2>
		<pcr_amplicon_size>763</pcr_amplicon_size>
		<canonical_amplicon>AACTACAGTACCCCTCCAGAAGAGCGTCGGAGGGGCTGAAAATTGGGCTGAAATCGGTCGAAAATGACTGGAAATTGACATTTTTTAGCTTTTCCGTGATTGCTCATGCTTAATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTC</canonical_amplicon>
		<polymorphic_amplicon>AACTACAGTACCCCTCCAGAAGAGCGTCGGAGGGGCTGAAAATTGGGCTGAAATCGGTCGAAAATGACTGGAAATTGACATTTTTTAGCTTTTCCGTGATTGCTCATGCTTAATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCYTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32452</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>65430</contig_pos>
        <strand></strand>
        <context>tcyttaattt[C/T]craatttcaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTT</left_flank>
        <right_flank>CAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAA</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCAAAAATGAGTCTGAAAATTGACTTTTTTTTTAGCTTTTCCGCGATTGCTCATCTTTAATTTTCGAATTTCAAAACTACCGTACTCCTAAACATGGCTCAAAATAGCTTAAAATATGCCTGAAACGCGCAAATTTGATTTAAAATCGTCCAAAAAATCAACTAGAAATGATCTGGCATAGCTTTAAAGCGATTGCTCAGTCTTAAAACTACAGTACCCCTCCAGAAGAGCGTCGGAGGGGCTGAAAATTGGGCTGAAATCGGTCGAAAATGACTGGAAATTGACATTTTTTAGCTTTTCCGTGATTGCTCATGCTTAATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTCAATTTCAAAACTACCGTACTCCTAAAAATA</canonical>
            <polymorphic>GCCAAAAATGAGTCTGAAAATTGACTTTTTTTTTAGCTTTTCCGCGATTGCTCATCTTTAATTTTCGAATTTCAAAACTACCGTACTCCTAAACATGGCTCAAAATAGCTTAAAATATGCCTGAAACGCGCAAATTTGATTTAAAATCGTCCAAAAAATCAACTAGAAATGATCTGGCATAGCTTTAAAGCGATTGCTCAGTCTTAAAACTACAGTACCCCTCCAGAAGAGCGTCGGAGGGGCTGAAAATTGGGCTGAAATCGGTCGAAAATGACTGGAAATTGACATTTTTTAGCTTTTCCGTGATTGCTCATGCTTAATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTYCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTCAATTTCAAAACTACCGTACTCCTAAAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTACAGTACCCCTCCAGAA</pcr_primer_p1>
		<pcr_primer_p2>GAGAAATTTAGGATGAGCAATC</pcr_primer_p2>
		<pcr_amplicon_size>763</pcr_amplicon_size>
		<canonical_amplicon>AACTACAGTACCCCTCCAGAAGAGCGTCGGAGGGGCTGAAAATTGGGCTGAAATCGGTCGAAAATGACTGGAAATTGACATTTTTTAGCTTTTCCGTGATTGCTCATGCTTAATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTC</canonical_amplicon>
		<polymorphic_amplicon>AACTACAGTACCCCTCCAGAAGAGCGTCGGAGGGGCTGAAAATTGGGCTGAAATCGGTCGAAAATGACTGGAAATTGACATTTTTTAGCTTTTCCGTGATTGCTCATGCTTAATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTYCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32453</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>65432</contig_pos>
        <strand>+</strand>
        <context>yttaatttyc[A/G]aatttcaaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTCC</left_flank>
        <right_flank>AATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAAATGAGTCTGAAAATTGACTTTTTTTTTAGCTTTTCCGCGATTGCTCATCTTTAATTTTCGAATTTCAAAACTACCGTACTCCTAAACATGGCTCAAAATAGCTTAAAATATGCCTGAAACGCGCAAATTTGATTTAAAATCGTCCAAAAAATCAACTAGAAATGATCTGGCATAGCTTTAAAGCGATTGCTCAGTCTTAAAACTACAGTACCCCTCCAGAAGAGCGTCGGAGGGGCTGAAAATTGGGCTGAAATCGGTCGAAAATGACTGGAAATTGACATTTTTTAGCTTTTCCGTGATTGCTCATGCTTAATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTCAATTTCAAAACTACCGTACTCCTAAAAATATC</canonical>
            <polymorphic>CAAAAATGAGTCTGAAAATTGACTTTTTTTTTAGCTTTTCCGCGATTGCTCATCTTTAATTTTCGAATTTCAAAACTACCGTACTCCTAAACATGGCTCAAAATAGCTTAAAATATGCCTGAAACGCGCAAATTTGATTTAAAATCGTCCAAAAAATCAACTAGAAATGATCTGGCATAGCTTTAAAGCGATTGCTCAGTCTTAAAACTACAGTACCCCTCCAGAAGAGCGTCGGAGGGGCTGAAAATTGGGCTGAAATCGGTCGAAAATGACTGGAAATTGACATTTTTTAGCTTTTCCGTGATTGCTCATGCTTAATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTCCRAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTCAATTTCAAAACTACCGTACTCCTAAAAATATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>292 194 133 124 65 65 44 43 40</canonical_bands>
                <polymorphic_bands>425 194 124 65 65 44 43 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTACAGTACCCCTCCAGAA</pcr_primer_p1>
		<pcr_primer_p2>GAGAAATTTAGGATGAGCAATC</pcr_primer_p2>
		<pcr_amplicon_size>763</pcr_amplicon_size>
		<canonical_amplicon>AACTACAGTACCCCTCCAGAAGAGCGTCGGAGGGGCTGAAAATTGGGCTGAAATCGGTCGAAAATGACTGGAAATTGACATTTTTTAGCTTTTCCGTGATTGCTCATGCTTAATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTC</canonical_amplicon>
		<polymorphic_amplicon>AACTACAGTACCCCTCCAGAAGAGCGTCGGAGGGGCTGAAAATTGGGCTGAAATCGGTCGAAAATGACTGGAAATTGACATTTTTTAGCTTTTCCGTGATTGCTCATGCTTAATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTCCRAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32454</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>65600</contig_pos>
        <strand></strand>
        <context>actagctagc[A/T]ccagtagagc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGC</left_flank>
        <right_flank>CCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATCTGGCATAGCTTTAAAGCGATTGCTCAGTCTTAAAACTACAGTACCCCTCCAGAAGAGCGTCGGAGGGGCTGAAAATTGGGCTGAAATCGGTCGAAAATGACTGGAAATTGACATTTTTTAGCTTTTCCGTGATTGCTCATGCTTAATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTCAATTTCAAAACTACCGTACTCCTAAAAATATCTAAAGTCGCCACGAATTGGCTGAAAATGGACTAGAAATCAGCTAGAATCGCTCAACAACCTCTTTTAACTCCCAATTGCTCATCCTTAACTTCGAAAAACTACAGTATCCCAGCCCAAAAATGCGTCTAAATGGCTTTAAAGTGGTCCAAAATCAGCCTAAATGGTCC</canonical>
            <polymorphic>GATCTGGCATAGCTTTAAAGCGATTGCTCAGTCTTAAAACTACAGTACCCCTCCAGAAGAGCGTCGGAGGGGCTGAAAATTGGGCTGAAATCGGTCGAAAATGACTGGAAATTGACATTTTTTAGCTTTTCCGTGATTGCTCATGCTTAATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCWCCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTCAATTTCAAAACTACCGTACTCCTAAAAATATCTAAAGTCGCCACGAATTGGCTGAAAATGGACTAGAAATCAGCTAGAATCGCTCAACAACCTCTTTTAACTCCCAATTGCTCATCCTTAACTTCGAAAAACTACAGTATCCCAGCCCAAAAATGCGTCTAAATGGCTTTAAAGTGGTCCAAAATCAGCCTAAATGGTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>300 291 135 133 74 43 24</canonical_bands>
                <polymorphic_bands>334 300 135 133 74 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTACAGTACCCCTCCAGAA</pcr_primer_p1>
		<pcr_primer_p2>GAGAAATTTAGGATGAGCAATC</pcr_primer_p2>
		<pcr_amplicon_size>763</pcr_amplicon_size>
		<canonical_amplicon>AACTACAGTACCCCTCCAGAAGAGCGTCGGAGGGGCTGAAAATTGGGCTGAAATCGGTCGAAAATGACTGGAAATTGACATTTTTTAGCTTTTCCGTGATTGCTCATGCTTAATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTC</canonical_amplicon>
		<polymorphic_amplicon>AACTACAGTACCCCTCCAGAAGAGCGTCGGAGGGGCTGAAAATTGGGCTGAAATCGGTCGAAAATGACTGGAAATTGACATTTTTTAGCTTTTCCGTGATTGCTCATGCTTAATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCWCCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32455</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>65692</contig_pos>
        <strand></strand>
        <context>gagccgaaaa[T/A]gtccaaaaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAA</left_flank>
        <right_flank>GTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTCGAAAATGACTGGAAATTGACATTTTTTAGCTTTTCCGTGATTGCTCATGCTTAATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTCAATTTCAAAACTACCGTACTCCTAAAAATATCTAAAGTCGCCACGAATTGGCTGAAAATGGACTAGAAATCAGCTAGAATCGCTCAACAACCTCTTTTAACTCCCAATTGCTCATCCTTAACTTCGAAAAACTACAGTATCCCAGCCCAAAAATGCGTCTAAATGGCTTTAAAGTGGTCCAAAATCAGCCTAAATGGTCCAAAAGTGAGCTTAAATGAACTGAAAATTGGCTGAAAATGACTATTTTAAGCCCTAAAAAGCTCTCTTAAAACCTTATTTTTCAGATATTGCT</canonical>
            <polymorphic>GGTCGAAAATGACTGGAAATTGACATTTTTTAGCTTTTCCGTGATTGCTCATGCTTAATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAAWGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTCAATTTCAAAACTACCGTACTCCTAAAAATATCTAAAGTCGCCACGAATTGGCTGAAAATGGACTAGAAATCAGCTAGAATCGCTCAACAACCTCTTTTAACTCCCAATTGCTCATCCTTAACTTCGAAAAACTACAGTATCCCAGCCCAAAAATGCGTCTAAATGGCTTTAAAGTGGTCCAAAATCAGCCTAAATGGTCCAAAAGTGAGCTTAAATGAACTGAAAATTGGCTGAAAATGACTATTTTAAGCCCTAAAAAGCTCTCTTAAAACCTTATTTTTCAGATATTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTACAGTACCCCTCCAGAA</pcr_primer_p1>
		<pcr_primer_p2>GAGAAATTTAGGATGAGCAATC</pcr_primer_p2>
		<pcr_amplicon_size>763</pcr_amplicon_size>
		<canonical_amplicon>ATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTC</canonical_amplicon>
		<polymorphic_amplicon>AWGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32456</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>65749</contig_pos>
        <strand></strand>
        <context>cgtaccccaa[A/G]gaayggctca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAA</left_flank>
        <right_flank>GAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTCAATTTCAAAACTACCGTACTCCTAAAAATATCTAAAGTCGCCACGAATTGGCTGAAAATGGACTAGAAATCAGCTAGAATCGCTCAACAACCTCTTTTAACTCCCAATTGCTCATCCTTAACTTCGAAAAACTACAGTATCCCAGCCCAAAAATGCGTCTAAATGGCTTTAAAGTGGTCCAAAATCAGCCTAAATGGTCCAAAAGTGAGCTTAAATGAACTGAAAATTGGCTGAAAATGACTATTTTAAGCCCTAAAAAGCTCTCTTAAAACCTTATTTTTCAGATATTGCTCATCATTAATTTCAATGCTACCGTACTCCTATGGCCCAAATACCCTCAAAATGAGCT</canonical>
            <polymorphic>ATTTCCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAARGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTCAATTTCAAAACTACCGTACTCCTAAAAATATCTAAAGTCGCCACGAATTGGCTGAAAATGGACTAGAAATCAGCTAGAATCGCTCAACAACCTCTTTTAACTCCCAATTGCTCATCCTTAACTTCGAAAAACTACAGTATCCCAGCCCAAAAATGCGTCTAAATGGCTTTAAAGTGGTCCAAAATCAGCCTAAATGGTCCAAAAGTGAGCTTAAATGAACTGAAAATTGGCTGAAAATGACTATTTTAAGCCCTAAAAAGCTCTCTTAAAACCTTATTTTTCAGATATTGCTCATCATTAATTTCAATGCTACCGTACTCCTATGGCCCAAATACCCTCAAAATGAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTACAGTACCCCTCCAGAA</pcr_primer_p1>
		<pcr_primer_p2>GAGAAATTTAGGATGAGCAATC</pcr_primer_p2>
		<pcr_amplicon_size>763</pcr_amplicon_size>
		<canonical_amplicon>AAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTC</canonical_amplicon>
		<polymorphic_amplicon>ARGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32457</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>65753</contig_pos>
        <strand></strand>
        <context>ccccaargaa[T/C]ggctcaaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAA</left_flank>
        <right_flank>GGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTCAATTTCAAAACTACCGTACTCCTAAAAATATCTAAAGTCGCCACGAATTGGCTGAAAATGGACTAGAAATCAGCTAGAATCGCTCAACAACCTCTTTTAACTCCCAATTGCTCATCCTTAACTTCGAAAAACTACAGTATCCCAGCCCAAAAATGCGTCTAAATGGCTTTAAAGTGGTCCAAAATCAGCCTAAATGGTCCAAAAGTGAGCTTAAATGAACTGAAAATTGGCTGAAAATGACTATTTTAAGCCCTAAAAAGCTCTCTTAAAACCTTATTTTTCAGATATTGCTCATCATTAATTTCAATGCTACCGTACTCCTATGGCCCAAATACCCTCAAAATGAGCTCTGA</canonical>
            <polymorphic>CCGAATTTCAAAACTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAAYGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTCAATTTCAAAACTACCGTACTCCTAAAAATATCTAAAGTCGCCACGAATTGGCTGAAAATGGACTAGAAATCAGCTAGAATCGCTCAACAACCTCTTTTAACTCCCAATTGCTCATCCTTAACTTCGAAAAACTACAGTATCCCAGCCCAAAAATGCGTCTAAATGGCTTTAAAGTGGTCCAAAATCAGCCTAAATGGTCCAAAAGTGAGCTTAAATGAACTGAAAATTGGCTGAAAATGACTATTTTAAGCCCTAAAAAGCTCTCTTAAAACCTTATTTTTCAGATATTGCTCATCATTAATTTCAATGCTACCGTACTCCTATGGCCCAAATACCCTCAAAATGAGCTCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNTGG</site>
                <isoschizomers>
                    <enzyme>AccB7I</enzyme>
                    <enzyme>PflBI</enzyme>
                    <enzyme>PflMI</enzyme>
                    <enzyme>Van91I</enzyme>
                </isoschizomers>
                <canonical_bands>498 306 196</canonical_bands>
                <polymorphic_bands>694 306</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTACAGTACCCCTCCAGAA</pcr_primer_p1>
		<pcr_primer_p2>GAGAAATTTAGGATGAGCAATC</pcr_primer_p2>
		<pcr_amplicon_size>763</pcr_amplicon_size>
		<canonical_amplicon>ATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTC</canonical_amplicon>
		<polymorphic_amplicon>AYGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32458</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>65766</contig_pos>
        <strand></strand>
        <context>ctcaaaaacc[T/C]taaatttgac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACC</left_flank>
        <right_flank>TAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTCAATTTCAAAACTACCGTACTCCTAAAAATATCTAAAGTCGCCACGAATTGGCTGAAAATGGACTAGAAATCAGCTAGAATCGCTCAACAACCTCTTTTAACTCCCAATTGCTCATCCTTAACTTCGAAAAACTACAGTATCCCAGCCCAAAAATGCGTCTAAATGGCTTTAAAGTGGTCCAAAATCAGCCTAAATGGTCCAAAAGTGAGCTTAAATGAACTGAAAATTGGCTGAAAATGACTATTTTAAGCCCTAAAAAGCTCTCTTAAAACCTTATTTTTCAGATATTGCTCATCATTAATTTCAATGCTACCGTACTCCTATGGCCCAAATACCCTCAAAATGAGCTCTGAATAGCTCAAAAAT</canonical>
            <polymorphic>CTACCGTATCCCTAAAATGGCTTAAAACCCCTGAATTTGAGTGAAAATCGCTTTGAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCYTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTCAATTTCAAAACTACCGTACTCCTAAAAATATCTAAAGTCGCCACGAATTGGCTGAAAATGGACTAGAAATCAGCTAGAATCGCTCAACAACCTCTTTTAACTCCCAATTGCTCATCCTTAACTTCGAAAAACTACAGTATCCCAGCCCAAAAATGCGTCTAAATGGCTTTAAAGTGGTCCAAAATCAGCCTAAATGGTCCAAAAGTGAGCTTAAATGAACTGAAAATTGGCTGAAAATGACTATTTTAAGCCCTAAAAAGCTCTCTTAAAACCTTATTTTTCAGATATTGCTCATCATTAATTTCAATGCTACCGTACTCCTATGGCCCAAATACCCTCAAAATGAGCTCTGAATAGCTCAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>195 148 135 96 68 51 42 41 35 32 32 31 22 21 21 20 10</canonical_bands>
                <polymorphic_bands>227 148 135 96 68 51 42 41 35 32 31 22 21 21 20 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTACAGTACCCCTCCAGAA</pcr_primer_p1>
		<pcr_primer_p2>GAGAAATTTAGGATGAGCAATC</pcr_primer_p2>
		<pcr_amplicon_size>763</pcr_amplicon_size>
		<canonical_amplicon>CTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTC</canonical_amplicon>
		<polymorphic_amplicon>CYTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32459</snp_id>
        <super_contig>c007500871.Contig1</super_contig>
        <contig_pos>65820</contig_pos>
        <strand></strand>
        <context>aaaataggtc[A/G]aaaatgagtc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTC</left_flank>
        <right_flank>AAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTCAATTTCAAAACTACCGTACTCCTAAAAATATCTAAAGTCGCCACGAATTGGCTGAAAATGGACTAGAAATCAGCTAGAATCGCTCAACAACCTCTTTTAACTCCCAATTGCTCATCCTTAACTTCGAAAAACTACAGTATCCCAGCCCAAAAATGCGTCTAAATGGCTTTAAAGTGGTCCAAAATCAGCCTAAATGGTCCAAAAGTGAGCTTAAATGAACTGAAAATTGGCTGAAAATGACTATTTTAAGCCCTAAAAAGCTCTCTTAAAACCTTATTTTTCAGATATTGCTCATCATTAATTTCAATGCTACCGTACTCCTATGGCCCAAATACCCTCAAAATGAGCTCTGAATAGCTCAAAAATGCCCAATTTTTCGCCCTAAAACCCCCAAAAGTTCATTTTTCAACGATTGCTCAG</canonical>
            <polymorphic>GAAATCGGCTGAAAATTGCTGAAAATCGGTCAAAAAAGAGCCTAAATGATCTAAAAATGGCTCAAAATGATGATTTTTGAGTTTTTTCGCGATTGCTCATCCTTAATTTCCAAATTTCAAAACTACCGTACCCTTAAAACTAGCTCAACATAGCTTAAAAATGGCTGAAATCGCCGCAAATTGGCTGAAAATGGACTAAAAATCAGCTAGAATCGCTCAAAATCCCCAATTTTTCAGCGATTGCTCATCCTTAATTTCAAACTACCGTAACTAGCTAGCACCAGTAGAGCGTCGGAGGGGCTGAAAATAGGACCTTTAGGGTGGTAAATAGGTTGAAAATAGCTGAAAATCGGTCAAAAAAGAGCCGAAAATGTCCAAAAATGGCTCAAAATGATGATTTTCCGAATTTCAAAACTACCGTACCCCAAAGAATGGCTCAAAAACCTTAAATTTGACTGAAAATCGCTTTACAATAGCTTAAAATGGCTGAAAATAGGTCRAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTCAATTTCAAAACTACCGTACTCCTAAAAATATCTAAAGTCGCCACGAATTGGCTGAAAATGGACTAGAAATCAGCTAGAATCGCTCAACAACCTCTTTTAACTCCCAATTGCTCATCCTTAACTTCGAAAAACTACAGTATCCCAGCCCAAAAATGCGTCTAAATGGCTTTAAAGTGGTCCAAAATCAGCCTAAATGGTCCAAAAGTGAGCTTAAATGAACTGAAAATTGGCTGAAAATGACTATTTTAAGCCCTAAAAAGCTCTCTTAAAACCTTATTTTTCAGATATTGCTCATCATTAATTTCAATGCTACCGTACTCCTATGGCCCAAATACCCTCAAAATGAGCTCTGAATAGCTCAAAAATGCCCAATTTTTCGCCCTAAAACCCCCAAAAGTTCATTTTTCAACGATTGCTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTACAGTACCCCTCCAGAA</pcr_primer_p1>
		<pcr_primer_p2>GAGAAATTTAGGATGAGCAATC</pcr_primer_p2>
		<pcr_amplicon_size>763</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTC</canonical_amplicon>
		<polymorphic_amplicon>CRAAAATGAGTCTAAATGGTTTAAAAATGGTTAAAAATGGTCATTTTCGCGCTTTTTCGCGATTGCTCATCCTAAATTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32460</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>667</contig_pos>
        <strand>+</strand>
        <context>TTTATTTAAT[C/T]GGTGAGTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATACTTATATTGGCACATGGTTATACATCTACACTGATGTTTTATTTAAT</left_flank>
        <right_flank>GGTGAGTTTTATCATACTTCTGGTAGACGTATAATTTATTTTATAAGTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTTATGCTGCTTTTTGTTCATTTCCTTTTTTATTTGTGTATTTTAAAAGTAATTTTTTACTGGTGTTTACCTACTATAATTTTGTTATCTCCTGAGAAATATTTTTTATTTTAAGATTAAGGTTTATAATAAAATTTCCTATTTATTTTTTACATCTATGGTTACCTAAGGCTCATGTTGAGGCCCCCACTACAGCTAGTATACTTTTAGCAGGCCTTTTATTAAAATTGGGTACAGCTGGTTTTTTACGTATTTTAGGTAGTTTAAGTTTTGTACATAATAATGTTTGAATTTTAATTGCCTTTTTAGGTATGATTTTAGGATCTTTTTGTTGTGTGTTTCAAAGTGATTCTAATGCTTTAGCAGCTTATTCTTCAGTTACTCATATAAGTTTTTTACTACTGTCCCTGGTTTTTATTACAATAAGTAGTTAAATTAGCAGAGTTATACTTATATTGGCACATGGTTATACATCTACACTGATGTTTTATTTAATCGGTGAGTTTTATCATACTTCTGGTAGACGTATAATTTATTTTATAAGTATGATTTTTTAGTTCTAGAATAATTATAGGAATTTTGTTTTCAGTAGTTTTTTTGTCTAATAGTGGAGTGCCACCCTCTTTATCTTTTCTTTCTGAGTTTTTAGTTATTTCAAATAGTTTATTAATTGGAAAAAGAATATTTTTAATAATTTTTATTTATTTTGTAGTTTCTTTTTACTATTCTTTGTTTTTAATCACTAGCTCTTTAATAGGTAAAGGTTTTTATAATTTTAATACTTGAAATGTAGGATTTTCAGCGCCGCTAGTGCTAATAATATACAATGTATTCTGACTGAGTGTGTTTTACTAGTAATCTGGAGATTTATCTCTTTTTTTTTGGTCTTTAATACATTATTATTAATAATGTGTTAACATTTTAAATTTAAAAGTAAAATTGTTATTTTAAGTATAACTTTTAAATTAATCTTTATAAAAAATATCAAGGTGGTTTA</canonical>
            <polymorphic>TGTTTTATGCTGCTTTTTGTTCATTTCCTTTTTTATTTGTGTATTTTAAAAGTAATTTTTTACTGGTGTTTACCTACTATAATTTTGTTATCTCCTGAGAAATATTTTTTATTTTAAGATTAAGGTTTATAATAAAATTTCCTATTTATTTTTTACATCTATGGTTACCTAAGGCTCATGTTGAGGCCCCCACTACAGCTAGTATACTTTTAGCAGGCCTTTTATTAAAATTGGGTACAGCTGGTTTTTTACGTATTTTAGGTAGTTTAAGTTTTGTACATAATAATGTTTGAATTTTAATTGCCTTTTTAGGTATGATTTTAGGATCTTTTTGTTGTGTGTTTCAAAGTGATTCTAATGCTTTAGCAGCTTATTCTTCAGTTACTCATATAAGTTTTTTACTACTGTCCCTGGTTTTTATTACAATAAGTAGTTAAATTAGCAGAGTTATACTTATATTGGCACATGGTTATACATCTACACTGATGTTTTATTTAATYGGTGAGTTTTATCATACTTCTGGTAGACGTATAATTTATTTTATAAGTATGATTTTTTAGTTCTAGAATAATTATAGGAATTTTGTTTTCAGTAGTTTTTTTGTCTAATAGTGGAGTGCCACCCTCTTTATCTTTTCTTTCTGAGTTTTTAGTTATTTCAAATAGTTTATTAATTGGAAAAAGAATATTTTTAATAATTTTTATTTATTTTGTAGTTTCTTTTTACTATTCTTTGTTTTTAATCACTAGCTCTTTAATAGGTAAAGGTTTTTATAATTTTAATACTTGAAATGTAGGATTTTCAGCGCCGCTAGTGCTAATAATATACAATGTATTCTGACTGAGTGTGTTTTACTAGTAATCTGGAGATTTATCTCTTTTTTTTTGGTCTTTAATACATTATTATTAATAATGTGTTAACATTTTAAATTTAAAAGTAAAATTGTTATTTTAAGTATAACTTTTAAATTAATCTTTATAAAAAATATCAAGGTGGTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTACTACTGTCCCTGGTTTTTA</pcr_primer_p1>
		<pcr_primer_p2>ACTCAGAAAGAAAAGATAAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTACTACTGTCCCTGGTTTTTATTACAATAAGTAGTTAAATTAGCAGAGTTATACTTATATTGGCACATGGTTATACATCTACACTGATGTTTTATTTAATCGGTGAGTTTTATCATACTTCTGGTAGACGTATAATTTATTTTATAAGTATGATTTTTTAGTTCTAGAATAATTATAGGAATTTTGTTTTCAGTAGTTTTTTTGTCTAATAGTGGAGTGCCACCCTCTTTATCTTTTCTTTCTGAGT</canonical_amplicon>
		<polymorphic_amplicon>TTTACTACTGTCCCTGGTTTTTATTACAATAAGTAGTTAAATTAGCAGAGTTATACTTATATTGGCACATGGTTATACATCTACACTGATGTTTTATTTAATYGGTGAGTTTTATCATACTTCTGGTAGACGTATAATTTATTTTATAAGTATGATTTTTTAGTTCTAGAATAATTATAGGAATTTTGTTTTCAGTAGTTTTTTTGTCTAATAGTGGAGTGCCACCCTCTTTATCTTTTCTTTCTGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32461</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>682</contig_pos>
        <strand>+</strand>
        <context>AGTTTTATCA[C/T]ACTTCTGGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATGGTTATACATCTACACTGATGTTTTATTTAATCGGTGAGTTTTATCA</left_flank>
        <right_flank>ACTTCTGGTAGACGTATAATTTATTTTATAAGTATGATTTTTTAGTTCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGTTCATTTCCTTTTTTATTTGTGTATTTTAAAAGTAATTTTTTACTGGTGTTTACCTACTATAATTTTGTTATCTCCTGAGAAATATTTTTTATTTTAAGATTAAGGTTTATAATAAAATTTCCTATTTATTTTTTACATCTATGGTTACCTAAGGCTCATGTTGAGGCCCCCACTACAGCTAGTATACTTTTAGCAGGCCTTTTATTAAAATTGGGTACAGCTGGTTTTTTACGTATTTTAGGTAGTTTAAGTTTTGTACATAATAATGTTTGAATTTTAATTGCCTTTTTAGGTATGATTTTAGGATCTTTTTGTTGTGTGTTTCAAAGTGATTCTAATGCTTTAGCAGCTTATTCTTCAGTTACTCATATAAGTTTTTTACTACTGTCCCTGGTTTTTATTACAATAAGTAGTTAAATTAGCAGAGTTATACTTATATTGGCACATGGTTATACATCTACACTGATGTTTTATTTAATCGGTGAGTTTTATCATACTTCTGGTAGACGTATAATTTATTTTATAAGTATGATTTTTTAGTTCTAGAATAATTATAGGAATTTTGTTTTCAGTAGTTTTTTTGTCTAATAGTGGAGTGCCACCCTCTTTATCTTTTCTTTCTGAGTTTTTAGTTATTTCAAATAGTTTATTAATTGGAAAAAGAATATTTTTAATAATTTTTATTTATTTTGTAGTTTCTTTTTACTATTCTTTGTTTTTAATCACTAGCTCTTTAATAGGTAAAGGTTTTTATAATTTTAATACTTGAAATGTAGGATTTTCAGCGCCGCTAGTGCTAATAATATACAATGTATTCTGACTGAGTGTGTTTTACTAGTAATCTGGAGATTTATCTCTTTTTTTTTGGTCTTTAATACATTATTATTAATAATGTGTTAACATTTTAAATTTAAAAGTAAAATTGTTATTTTAAGTATAACTTTTAAATTAATCTTTATAAAAAATATCAAGGTGGTTTAGCTGTCTGGTTAGAA</canonical>
            <polymorphic>TTTGTTCATTTCCTTTTTTATTTGTGTATTTTAAAAGTAATTTTTTACTGGTGTTTACCTACTATAATTTTGTTATCTCCTGAGAAATATTTTTTATTTTAAGATTAAGGTTTATAATAAAATTTCCTATTTATTTTTTACATCTATGGTTACCTAAGGCTCATGTTGAGGCCCCCACTACAGCTAGTATACTTTTAGCAGGCCTTTTATTAAAATTGGGTACAGCTGGTTTTTTACGTATTTTAGGTAGTTTAAGTTTTGTACATAATAATGTTTGAATTTTAATTGCCTTTTTAGGTATGATTTTAGGATCTTTTTGTTGTGTGTTTCAAAGTGATTCTAATGCTTTAGCAGCTTATTCTTCAGTTACTCATATAAGTTTTTTACTACTGTCCCTGGTTTTTATTACAATAAGTAGTTAAATTAGCAGAGTTATACTTATATTGGCACATGGTTATACATCTACACTGATGTTTTATTTAATCGGTGAGTTTTATCAYACTTCTGGTAGACGTATAATTTATTTTATAAGTATGATTTTTTAGTTCTAGAATAATTATAGGAATTTTGTTTTCAGTAGTTTTTTTGTCTAATAGTGGAGTGCCACCCTCTTTATCTTTTCTTTCTGAGTTTTTAGTTATTTCAAATAGTTTATTAATTGGAAAAAGAATATTTTTAATAATTTTTATTTATTTTGTAGTTTCTTTTTACTATTCTTTGTTTTTAATCACTAGCTCTTTAATAGGTAAAGGTTTTTATAATTTTAATACTTGAAATGTAGGATTTTCAGCGCCGCTAGTGCTAATAATATACAATGTATTCTGACTGAGTGTGTTTTACTAGTAATCTGGAGATTTATCTCTTTTTTTTTGGTCTTTAATACATTATTATTAATAATGTGTTAACATTTTAAATTTAAAAGTAAAATTGTTATTTTAAGTATAACTTTTAAATTAATCTTTATAAAAAATATCAAGGTGGTTTAGCTGTCTGGTTAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTACTACTGTCCCTGGTTTTTA</pcr_primer_p1>
		<pcr_primer_p2>ACTCAGAAAGAAAAGATAAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTACTACTGTCCCTGGTTTTTATTACAATAAGTAGTTAAATTAGCAGAGTTATACTTATATTGGCACATGGTTATACATCTACACTGATGTTTTATTTAATCGGTGAGTTTTATCATACTTCTGGTAGACGTATAATTTATTTTATAAGTATGATTTTTTAGTTCTAGAATAATTATAGGAATTTTGTTTTCAGTAGTTTTTTTGTCTAATAGTGGAGTGCCACCCTCTTTATCTTTTCTTTCTGAGT</canonical_amplicon>
		<polymorphic_amplicon>TTTACTACTGTCCCTGGTTTTTATTACAATAAGTAGTTAAATTAGCAGAGTTATACTTATATTGGCACATGGTTATACATCTACACTGATGTTTTATTTAATCGGTGAGTTTTATCAYACTTCTGGTAGACGTATAATTTATTTTATAAGTATGATTTTTTAGTTCTAGAATAATTATAGGAATTTTGTTTTCAGTAGTTTTTTTGTCTAATAGTGGAGTGCCACCCTCTTTATCTTTTCTTTCTGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32462</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>727</contig_pos>
        <strand>+</strand>
        <context>TGATTTTTTA[A/G]TTCTAGAATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATCATACTTCTGGTAGACGTATAATTTATTTTATAAGTATGATTTTTTA</left_flank>
        <right_flank>TTCTAGAATAATTATAGGAATTTTGTTTTCAGTAGTTTTTTTGTCTAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTGGTGTTTACCTACTATAATTTTGTTATCTCCTGAGAAATATTTTTTATTTTAAGATTAAGGTTTATAATAAAATTTCCTATTTATTTTTTACATCTATGGTTACCTAAGGCTCATGTTGAGGCCCCCACTACAGCTAGTATACTTTTAGCAGGCCTTTTATTAAAATTGGGTACAGCTGGTTTTTTACGTATTTTAGGTAGTTTAAGTTTTGTACATAATAATGTTTGAATTTTAATTGCCTTTTTAGGTATGATTTTAGGATCTTTTTGTTGTGTGTTTCAAAGTGATTCTAATGCTTTAGCAGCTTATTCTTCAGTTACTCATATAAGTTTTTTACTACTGTCCCTGGTTTTTATTACAATAAGTAGTTAAATTAGCAGAGTTATACTTATATTGGCACATGGTTATACATCTACACTGATGTTTTATTTAATCGGTGAGTTTTATCATACTTCTGGTAGACGTATAATTTATTTTATAAGTATGATTTTTTAGTTCTAGAATAATTATAGGAATTTTGTTTTCAGTAGTTTTTTTGTCTAATAGTGGAGTGCCACCCTCTTTATCTTTTCTTTCTGAGTTTTTAGTTATTTCAAATAGTTTATTAATTGGAAAAAGAATATTTTTAATAATTTTTATTTATTTTGTAGTTTCTTTTTACTATTCTTTGTTTTTAATCACTAGCTCTTTAATAGGTAAAGGTTTTTATAATTTTAATACTTGAAATGTAGGATTTTCAGCGCCGCTAGTGCTAATAATATACAATGTATTCTGACTGAGTGTGTTTTACTAGTAATCTGGAGATTTATCTCTTTTTTTTTGGTCTTTAATACATTATTATTAATAATGTGTTAACATTTTAAATTTAAAAGTAAAATTGTTATTTTAAGTATAACTTTTAAATTAATCTTTATAAAAAATATCAAGGTGGTTTAGCTGTCTGGTTAGAAAGATCTAATCATAAGGACATTGGAACCCTTTATTTTATCTTTGGT</canonical>
            <polymorphic>TACTGGTGTTTACCTACTATAATTTTGTTATCTCCTGAGAAATATTTTTTATTTTAAGATTAAGGTTTATAATAAAATTTCCTATTTATTTTTTACATCTATGGTTACCTAAGGCTCATGTTGAGGCCCCCACTACAGCTAGTATACTTTTAGCAGGCCTTTTATTAAAATTGGGTACAGCTGGTTTTTTACGTATTTTAGGTAGTTTAAGTTTTGTACATAATAATGTTTGAATTTTAATTGCCTTTTTAGGTATGATTTTAGGATCTTTTTGTTGTGTGTTTCAAAGTGATTCTAATGCTTTAGCAGCTTATTCTTCAGTTACTCATATAAGTTTTTTACTACTGTCCCTGGTTTTTATTACAATAAGTAGTTAAATTAGCAGAGTTATACTTATATTGGCACATGGTTATACATCTACACTGATGTTTTATTTAATCGGTGAGTTTTATCATACTTCTGGTAGACGTATAATTTATTTTATAAGTATGATTTTTTARTTCTAGAATAATTATAGGAATTTTGTTTTCAGTAGTTTTTTTGTCTAATAGTGGAGTGCCACCCTCTTTATCTTTTCTTTCTGAGTTTTTAGTTATTTCAAATAGTTTATTAATTGGAAAAAGAATATTTTTAATAATTTTTATTTATTTTGTAGTTTCTTTTTACTATTCTTTGTTTTTAATCACTAGCTCTTTAATAGGTAAAGGTTTTTATAATTTTAATACTTGAAATGTAGGATTTTCAGCGCCGCTAGTGCTAATAATATACAATGTATTCTGACTGAGTGTGTTTTACTAGTAATCTGGAGATTTATCTCTTTTTTTTTGGTCTTTAATACATTATTATTAATAATGTGTTAACATTTTAAATTTAAAAGTAAAATTGTTATTTTAAGTATAACTTTTAAATTAATCTTTATAAAAAATATCAAGGTGGTTTAGCTGTCTGGTTAGAAAGATCTAATCATAAGGACATTGGAACCCTTTATTTTATCTTTGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTACTACTGTCCCTGGTTTTTA</pcr_primer_p1>
		<pcr_primer_p2>ACTCAGAAAGAAAAGATAAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTACTACTGTCCCTGGTTTTTATTACAATAAGTAGTTAAATTAGCAGAGTTATACTTATATTGGCACATGGTTATACATCTACACTGATGTTTTATTTAATCGGTGAGTTTTATCATACTTCTGGTAGACGTATAATTTATTTTATAAGTATGATTTTTTAGTTCTAGAATAATTATAGGAATTTTGTTTTCAGTAGTTTTTTTGTCTAATAGTGGAGTGCCACCCTCTTTATCTTTTCTTTCTGAGT</canonical_amplicon>
		<polymorphic_amplicon>TTTACTACTGTCCCTGGTTTTTATTACAATAAGTAGTTAAATTAGCAGAGTTATACTTATATTGGCACATGGTTATACATCTACACTGATGTTTTATTTAATCGGTGAGTTTTATCATACTTCTGGTAGACGTATAATTTATTTTATAAGTATGATTTTTTARTTCTAGAATAATTATAGGAATTTTGTTTTCAGTAGTTTTTTTGTCTAATAGTGGAGTGCCACCCTCTTTATCTTTTCTTTCTGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32463</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>852</contig_pos>
        <strand>+</strand>
        <context>TGGAAAAAGa[C/T]tatttttaat</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTTTCTGAGTTTTTAGTTATTTCAAATAGTTTATTAATTGGAAAAAGA</left_flank>
        <right_flank>TATTTTTAATAATTTTTATTTATTTTGTAGTTTCTTTTTACTATTCTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCCCCACTACAGCTAGTATACTTTTAGCAGGCCTTTTATTAAAATTGGGTACAGCTGGTTTTTTACGTATTTTAGGTAGTTTAAGTTTTGTACATAATAATGTTTGAATTTTAATTGCCTTTTTAGGTATGATTTTAGGATCTTTTTGTTGTGTGTTTCAAAGTGATTCTAATGCTTTAGCAGCTTATTCTTCAGTTACTCATATAAGTTTTTTACTACTGTCCCTGGTTTTTATTACAATAAGTAGTTAAATTAGCAGAGTTATACTTATATTGGCACATGGTTATACATCTACACTGATGTTTTATTTAATCGGTGAGTTTTATCATACTTCTGGTAGACGTATAATTTATTTTATAAGTATGATTTTTTAGTTCTAGAATAATTATAGGAATTTTGTTTTCAGTAGTTTTTTTGTCTAATAGTGGAGTGCCACCCTCTTTATCTTTTCTTTCTGAGTTTTTAGTTATTTCAAATAGTTTATTAATTGGAAAAAGAATATTTTTAATAATTTTTATTTATTTTGTAGTTTCTTTTTACTATTCTTTGTTTTTAATCACTAGCTCTTTAATAGGTAAAGGTTTTTATAATTTTAATACTTGAAATGTAGGATTTTCAGCGCCGCTAGTGCTAATAATATACAATGTATTCTGACTGAGTGTGTTTTACTAGTAATCTGGAGATTTATCTCTTTTTTTTTGGTCTTTAATACATTATTATTAATAATGTGTTAACATTTTAAATTTAAAAGTAAAATTGTTATTTTAAGTATAACTTTTAAATTAATCTTTATAAAAAATATCAAGGTGGTTTAGCTGTCTGGTTAGAAAGATCTAATCATAAGGACATTGGAACCCTTTATTTTATCTTTGGTTTATGATCGGGAATAGTTGGTACTAGATTTTCTTTATTAATTCGTTTAGAATTGGCTAAACCTGGTTTCTTTTTAAGTAATGGTCAACTTTATAACTCTGTTATTACAGCGCATGCTATTTTAAT</canonical>
            <polymorphic>GCCCCCACTACAGCTAGTATACTTTTAGCAGGCCTTTTATTAAAATTGGGTACAGCTGGTTTTTTACGTATTTTAGGTAGTTTAAGTTTTGTACATAATAATGTTTGAATTTTAATTGCCTTTTTAGGTATGATTTTAGGATCTTTTTGTTGTGTGTTTCAAAGTGATTCTAATGCTTTAGCAGCTTATTCTTCAGTTACTCATATAAGTTTTTTACTACTGTCCCTGGTTTTTATTACAATAAGTAGTTAAATTAGCAGAGTTATACTTATATTGGCACATGGTTATACATCTACACTGATGTTTTATTTAATCGGTGAGTTTTATCATACTTCTGGTAGACGTATAATTTATTTTATAAGTATGATTTTTTAGTTCTAGAATAATTATAGGAATTTTGTTTTCAGTAGTTTTTTTGTCTAATAGTGGAGTGCCACCCTCTTTATCTTTTCTTTCTGAGTTTTTAGTTATTTCAAATAGTTTATTAATTGGAAAAAGAYTATTTTTAATAATTTTTATTTATTTTGTAGTTTCTTTTTACTATTCTTTGTTTTTAATCACTAGCTCTTTAATAGGTAAAGGTTTTTATAATTTTAATACTTGAAATGTAGGATTTTCAGCGCCGCTAGTGCTAATAATATACAATGTATTCTGACTGAGTGTGTTTTACTAGTAATCTGGAGATTTATCTCTTTTTTTTTGGTCTTTAATACATTATTATTAATAATGTGTTAACATTTTAAATTTAAAAGTAAAATTGTTATTTTAAGTATAACTTTTAAATTAATCTTTATAAAAAATATCAAGGTGGTTTAGCTGTCTGGTTAGAAAGATCTAATCATAAGGACATTGGAACCCTTTATTTTATCTTTGGTTTATGATCGGGAATAGTTGGTACTAGATTTTCTTTATTAATTCGTTTAGAATTGGCTAAACCTGGTTTCTTTTTAAGTAATGGTCAACTTTATAACTCTGTTATTACAGCGCATGCTATTTTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACCCTCTTTATCTTTTCTTTCT</pcr_primer_p1>
		<pcr_primer_p2>ACACACTCAGTCAGAATACATTG</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>CACCCTCTTTATCTTTTCTTTCTGAGTTTTTAGTTATTTCAAATAGTTTATTAATTGGAAAAAGAATATTTTTAATAATTTTTATTTATTTTGTAGTTTCTTTTTACTATTCTTTGTTTTTAATCACTAGCTCTTTAATAGGTAAAGGTTTTTATAATTTTAATACTTGAAATGTAGGATTTTCAGCGCCGCTAGTGCTAATAATATACAATGTATTCTGACTGAGTGTGT</canonical_amplicon>
		<polymorphic_amplicon>CACCCTCTTTATCTTTTCTTTCTGAGTTTTTAGTTATTTCAAATAGTTTATTAATTGGAAAAAGAYTATTTTTAATAATTTTTATTTATTTTGTAGTTTCTTTTTACTATTCTTTGTTTTTAATCACTAGCTCTTTAATAGGTAAAGGTTTTTATAATTTTAATACTTGAAATGTAGGATTTTCAGCGCCGCTAGTGCTAATAATATACAATGTATTCTGACTGAGTGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32464</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>2178</contig_pos>
        <strand>+</strand>
        <context>TATTATGAGT[C/T]CTAGGTTTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCACTTTGTTTGGTATAAAAATAATTTTTAATCCTCTTTTATTATGAGT</left_flank>
        <right_flank>CTAGGTTTTATTTTTTTATTTACTTTAGGTGGTTTAACGGGTGTAGTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATTTCTTTGGAACATATGAGTTTATTTGTCTGAACTGTATTTGTTACTGTGTTTTTATTGGTTTTGTCTTTACCAGTTTTAGCAGGTGCTATTACAATGTTATTAACAGATCGTAATTTAAACACCTCTTTCTTTGATCCAAGAACTGGTGGTAATCCTCTTATTTATCAACATTTATTTTGATTTTTTGGTCATCCAGAAGTTTATATTTTAATTTTACCTGCTTTTGGTATTATTAGTCAGTCTACTCTTTATTTGACTGGTAAAAAGGAAGTATTTGGTGCTCTTGGTATGGTTTATGCTATTTTAAGAATTGGTTTAATTGGTTGTGTAGTTTGGGCACATCATATGTATACTGTTGGTATAGATCTTGATTCACGTGCTTATTTTTCTGCTGCTACTATGGTAATTGCTGTTCCGACAGGGGTTAAGGTTTTTAGATGATTGGCCACTTTGTTTGGTATAAAAATAATTTTTAATCCTCTTTTATTATGAGTCCTAGGTTTTATTTTTTTATTTACTTTAGGTGGTTTAACGGGTGTAGTTTTATCAAACTCTAGATTGGATATTATTCTTCACGATACTTACTATGTTGTTAGTCATTTTCATTATGTTTTAAGACTAGGTGCAGTTTTTGGTATTTTTACAGGTGTAACATTGTGATGAAGATTTATTACAGGGTATGTTTTAGATAAATTGATGATGTCTGCAGTTTTTATTTTATTATTTATTGGAGTAAATCTTACTTTTTTTCCTTTACATTTTGCAGGTTTACACGGTTTCCCACGTAAATATTTAGATTATCCAGATGTGTACTCTATTTGAAATATTATTGCTTCTTATGGTTCTATAATTAGTACGTTTGGTTTATTTTTATTTATTTATGTTTTATTAGAGTCTTTCTTTAGTTATCGTCTGGTAATTAGAGATTATTATTCAAATAGAAGTCCAGAGTATTGTATGAGAAACTATGTATTTGGTCACAGTTATCAAGCTGA</canonical>
            <polymorphic>CTATTTCTTTGGAACATATGAGTTTATTTGTCTGAACTGTATTTGTTACTGTGTTTTTATTGGTTTTGTCTTTACCAGTTTTAGCAGGTGCTATTACAATGTTATTAACAGATCGTAATTTAAACACCTCTTTCTTTGATCCAAGAACTGGTGGTAATCCTCTTATTTATCAACATTTATTTTGATTTTTTGGTCATCCAGAAGTTTATATTTTAATTTTACCTGCTTTTGGTATTATTAGTCAGTCTACTCTTTATTTGACTGGTAAAAAGGAAGTATTTGGTGCTCTTGGTATGGTTTATGCTATTTTAAGAATTGGTTTAATTGGTTGTGTAGTTTGGGCACATCATATGTATACTGTTGGTATAGATCTTGATTCACGTGCTTATTTTTCTGCTGCTACTATGGTAATTGCTGTTCCGACAGGGGTTAAGGTTTTTAGATGATTGGCCACTTTGTTTGGTATAAAAATAATTTTTAATCCTCTTTTATTATGAGTYCTAGGTTTTATTTTTTTATTTACTTTAGGTGGTTTAACGGGTGTAGTTTTATCAAACTCTAGATTGGATATTATTCTTCACGATACTTACTATGTTGTTAGTCATTTTCATTATGTTTTAAGACTAGGTGCAGTTTTTGGTATTTTTACAGGTGTAACATTGTGATGAAGATTTATTACAGGGTATGTTTTAGATAAATTGATGATGTCTGCAGTTTTTATTTTATTATTTATTGGAGTAAATCTTACTTTTTTTCCTTTACATTTTGCAGGTTTACACGGTTTCCCACGTAAATATTTAGATTATCCAGATGTGTACTCTATTTGAAATATTATTGCTTCTTATGGTTCTATAATTAGTACGTTTGGTTTATTTTTATTTATTTATGTTTTATTAGAGTCTTTCTTTAGTTATCGTCTGGTAATTAGAGATTATTATTCAAATAGAAGTCCAGAGTATTGTATGAGAAACTATGTATTTGGTCACAGTTATCAAGCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCTAGG</site>
                <isoschizomers>
                    <enzyme>AvrII</enzyme>
                    <enzyme>BlnI</enzyme>
                    <enzyme>BspA2I</enzyme>
                    <enzyme>XmaJI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>401 375 121 103</canonical_bands>
                <polymorphic_bands>522 375 103</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTGCTGCTACTATGGTAAT</pcr_primer_p1>
		<pcr_primer_p2>CAAAAACTGCACCTAGTCTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTGCTGCTACTATGGTAATTGCTGTTCCGACAGGGGTTAAGGTTTTTAGATGATTGGCCACTTTGTTTGGTATAAAAATAATTTTTAATCCTCTTTTATTATGAGTCCTAGGTTTTATTTTTTTATTTACTTTAGGTGGTTTAACGGGTGTAGTTTTATCAAACTCTAGATTGGATATTATTCTTCACGATACTTACTATGTTGTTAGTCATTTTCATTATGTTTTAAGACTAGGTGCAGTTTTTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTGCTGCTACTATGGTAATTGCTGTTCCGACAGGGGTTAAGGTTTTTAGATGATTGGCCACTTTGTTTGGTATAAAAATAATTTTTAATCCTCTTTTATTATGAGTYCTAGGTTTTATTTTTTTATTTACTTTAGGTGGTTTAACGGGTGTAGTTTTATCAAACTCTAGATTGGATATTATTCTTCACGATACTTACTATGTTGTTAGTCATTTTCATTATGTTTTAAGACTAGGTGCAGTTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32465</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>3441</contig_pos>
        <strand></strand>
        <context>TGCTTGAGCC[C/T]TAAATTCATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAATATTCGTTTTTGTATTACCTCGGCTGATGTTATTCATGCTTGAGCC</left_flank>
        <right_flank>TAAATTCATTATCAGTAAAATTAGATGCTATAAGAGGTATTTTAAGAACC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATAATTTTTTTCAAGGTTATAATTTATTGTTTCAACATAGTTTATTTGCTAGTTACATGGATTGATTCCATGCTTTTAATTGTAGTTTATTATTAGGTGTTTTAGTATTTGTTACTTTATTATTTGGATATTTAATTTTTAGAACTTTTTATTTTAAAAGTAAAAAAATTGAGTATCAATTTGGTGAATTACTATGTAGTATTTTTCCTACTATTATTTTATTAATGCAGATAGTTCCTTCACTAAGTTTGTTATACTACTATGGTTTAATAAATTTAGATAGGAATTTAACAGTTAAAGTTACCGGACATCAGTGGTATTGAAGCTATGAGTATAGAGATATCCCTGGCTTAGAATTTGATTCTTATATAAAATCTTTAGATCAGCTAAATTTAGGAGAACCTCGTTTATTAGAAGTTGATAACCGTTGTGTAATTCCTTGTGATACTAATATTCGTTTTTGTATTACCTCGGCTGATGTTATTCATGCTTGAGCCCTAAATTCATTATCAGTAAAATTAGATGCTATAAGAGGTATTTTAAGAACCTTTAGTTATAGTTTTCCTATGGTGGGGGTATTCTATGGACAATGTTCAGAGATTTGTGGAGCTAATCACAGTTTTATACCTATTGCTCTGGAAGTTACTTTATTAGATAATTTTAAGAGATGATGTTTTGGTACTATAGAATAATTTAGCTTAATAGTTTATTTTAAAATGTTTACTTGTGGTGTAAAAGAAATTTAGAGCTTTAAAATTTATTTATTTAAATATTGGTATTGCATACTATTACAATAAAATTTCATTTTTATGAAAAATAGAAACAAAGGGTAGAGTAAAAGTTAGTTTTATTGTTTCATACTAAAAATCACTTTTACTAGAGTTGATATGTCGACCTTTGTGATAACTGTTTTTATTATTATATTAGAAAATTATATATTGCATATTTATTTTAGGAAAATTAAAATTTGAAGTGTTTTGATTTTATGTTTTACAACA</canonical>
            <polymorphic>AAATAATTTTTTTCAAGGTTATAATTTATTGTTTCAACATAGTTTATTTGCTAGTTACATGGATTGATTCCATGCTTTTAATTGTAGTTTATTATTAGGTGTTTTAGTATTTGTTACTTTATTATTTGGATATTTAATTTTTAGAACTTTTTATTTTAAAAGTAAAAAAATTGAGTATCAATTTGGTGAATTACTATGTAGTATTTTTCCTACTATTATTTTATTAATGCAGATAGTTCCTTCACTAAGTTTGTTATACTACTATGGTTTAATAAATTTAGATAGGAATTTAACAGTTAAAGTTACCGGACATCAGTGGTATTGAAGCTATGAGTATAGAGATATCCCTGGCTTAGAATTTGATTCTTATATAAAATCTTTAGATCAGCTAAATTTAGGAGAACCTCGTTTATTAGAAGTTGATAACCGTTGTGTAATTCCTTGTGATACTAATATTCGTTTTTGTATTACCTCGGCTGATGTTATTCATGCTTGAGCCYTAAATTCATTATCAGTAAAATTAGATGCTATAAGAGGTATTTTAAGAACCTTTAGTTATAGTTTTCCTATGGTGGGGGTATTCTATGGACAATGTTCAGAGATTTGTGGAGCTAATCACAGTTTTATACCTATTGCTCTGGAAGTTACTTTATTAGATAATTTTAAGAGATGATGTTTTGGTACTATAGAATAATTTAGCTTAATAGTTTATTTTAAAATGTTTACTTGTGGTGTAAAAGAAATTTAGAGCTTTAAAATTTATTTATTTAAATATTGGTATTGCATACTATTACAATAAAATTTCATTTTTATGAAAAATAGAAACAAAGGGTAGAGTAAAAGTTAGTTTTATTGTTTCATACTAAAAATCACTTTTACTAGAGTTGATATGTCGACCTTTGTGATAACTGTTTTTATTATTATATTAGAAAATTATATATTGCATATTTATTTTAGGAAAATTAAAATTTGAAGTGTTTTGATTTTATGTTTTACAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGAGAACCTCGTTTATTAGAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTCCAGAGCAATAGGTATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGGAGAACCTCGTTTATTAGAAGTTGATAACCGTTGTGTAATTCCTTGTGATACTAATATTCGTTTTTGTATTACCTCGGCTGATGTTATTCATGCTTGAGCCCTAAATTCATTATCAGTAAAATTAGATGCTATAAGAGGTATTTTAAGAACCTTTAGTTATAGTTTTCCTATGGTGGGGGTATTCTATGGACAATGTTCAGAGATTTGTGGAGCTAATCACAGTTTTATACCTATTGCTCTGGAAG</canonical_amplicon>
		<polymorphic_amplicon>AGGAGAACCTCGTTTATTAGAAGTTGATAACCGTTGTGTAATTCCTTGTGATACTAATATTCGTTTTTGTATTACCTCGGCTGATGTTATTCATGCTTGAGCCYTAAATTCATTATCAGTAAAATTAGATGCTATAAGAGGTATTTTAAGAACCTTTAGTTATAGTTTTCCTATGGTGGGGGTATTCTATGGACAATGTTCAGAGATTTGTGGAGCTAATCACAGTTTTATACCTATTGCTCTGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32466</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>3521</contig_pos>
        <strand></strand>
        <context>TGGTGGGGGT[A/T]TTCTATGGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATAAGAGGTATTTTAAGAACCTTTAGTTATAGTTTTCCTATGGTGGGGGT</left_flank>
        <right_flank>TTCTATGGACAATGTTCAGAGATTTGTGGAGCTAATCACAGTTTTATACC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGTAGTTTATTATTAGGTGTTTTAGTATTTGTTACTTTATTATTTGGATATTTAATTTTTAGAACTTTTTATTTTAAAAGTAAAAAAATTGAGTATCAATTTGGTGAATTACTATGTAGTATTTTTCCTACTATTATTTTATTAATGCAGATAGTTCCTTCACTAAGTTTGTTATACTACTATGGTTTAATAAATTTAGATAGGAATTTAACAGTTAAAGTTACCGGACATCAGTGGTATTGAAGCTATGAGTATAGAGATATCCCTGGCTTAGAATTTGATTCTTATATAAAATCTTTAGATCAGCTAAATTTAGGAGAACCTCGTTTATTAGAAGTTGATAACCGTTGTGTAATTCCTTGTGATACTAATATTCGTTTTTGTATTACCTCGGCTGATGTTATTCATGCTTGAGCCCTAAATTCATTATCAGTAAAATTAGATGCTATAAGAGGTATTTTAAGAACCTTTAGTTATAGTTTTCCTATGGTGGGGGTATTCTATGGACAATGTTCAGAGATTTGTGGAGCTAATCACAGTTTTATACCTATTGCTCTGGAAGTTACTTTATTAGATAATTTTAAGAGATGATGTTTTGGTACTATAGAATAATTTAGCTTAATAGTTTATTTTAAAATGTTTACTTGTGGTGTAAAAGAAATTTAGAGCTTTAAAATTTATTTATTTAAATATTGGTATTGCATACTATTACAATAAAATTTCATTTTTATGAAAAATAGAAACAAAGGGTAGAGTAAAAGTTAGTTTTATTGTTTCATACTAAAAATCACTTTTACTAGAGTTGATATGTCGACCTTTGTGATAACTGTTTTTATTATTATATTAGAAAATTATATATTGCATATTTATTTTAGGAAAATTAAAATTTGAAGTGTTTTGATTTTATGTTTTACAACATTTTCCTAATTTTATTTATTCATACTACTTTATTTAATAATACTTTATTAAATACATAATTTGTAAATTAGTAAATTTTA</canonical>
            <polymorphic>ATTGTAGTTTATTATTAGGTGTTTTAGTATTTGTTACTTTATTATTTGGATATTTAATTTTTAGAACTTTTTATTTTAAAAGTAAAAAAATTGAGTATCAATTTGGTGAATTACTATGTAGTATTTTTCCTACTATTATTTTATTAATGCAGATAGTTCCTTCACTAAGTTTGTTATACTACTATGGTTTAATAAATTTAGATAGGAATTTAACAGTTAAAGTTACCGGACATCAGTGGTATTGAAGCTATGAGTATAGAGATATCCCTGGCTTAGAATTTGATTCTTATATAAAATCTTTAGATCAGCTAAATTTAGGAGAACCTCGTTTATTAGAAGTTGATAACCGTTGTGTAATTCCTTGTGATACTAATATTCGTTTTTGTATTACCTCGGCTGATGTTATTCATGCTTGAGCCCTAAATTCATTATCAGTAAAATTAGATGCTATAAGAGGTATTTTAAGAACCTTTAGTTATAGTTTTCCTATGGTGGGGGTWTTCTATGGACAATGTTCAGAGATTTGTGGAGCTAATCACAGTTTTATACCTATTGCTCTGGAAGTTACTTTATTAGATAATTTTAAGAGATGATGTTTTGGTACTATAGAATAATTTAGCTTAATAGTTTATTTTAAAATGTTTACTTGTGGTGTAAAAGAAATTTAGAGCTTTAAAATTTATTTATTTAAATATTGGTATTGCATACTATTACAATAAAATTTCATTTTTATGAAAAATAGAAACAAAGGGTAGAGTAAAAGTTAGTTTTATTGTTTCATACTAAAAATCACTTTTACTAGAGTTGATATGTCGACCTTTGTGATAACTGTTTTTATTATTATATTAGAAAATTATATATTGCATATTTATTTTAGGAAAATTAAAATTTGAAGTGTTTTGATTTTATGTTTTACAACATTTTCCTAATTTTATTTATTCATACTACTTTATTTAATAATACTTTATTAAATACATAATTTGTAAATTAGTAAATTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAGAACCTCGTTTATTAGAAG</pcr_primer_p1>
		<pcr_primer_p2>CTTCCAGAGCAATAGGTATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGGAGAACCTCGTTTATTAGAAGTTGATAACCGTTGTGTAATTCCTTGTGATACTAATATTCGTTTTTGTATTACCTCGGCTGATGTTATTCATGCTTGAGCCCTAAATTCATTATCAGTAAAATTAGATGCTATAAGAGGTATTTTAAGAACCTTTAGTTATAGTTTTCCTATGGTGGGGGTATTCTATGGACAATGTTCAGAGATTTGTGGAGCTAATCACAGTTTTATACCTATTGCTCTGGAAG</canonical_amplicon>
		<polymorphic_amplicon>AGGAGAACCTCGTTTATTAGAAGTTGATAACCGTTGTGTAATTCCTTGTGATACTAATATTCGTTTTTGTATTACCTCGGCTGATGTTATTCATGCTTGAGCCCTAAATTCATTATCAGTAAAATTAGATGCTATAAGAGGTATTTTAAGAACCTTTAGTTATAGTTTTCCTATGGTGGGGGTWTTCTATGGACAATGTTCAGAGATTTGTGGAGCTAATCACAGTTTTATACCTATTGCTCTGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32467</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>3593</contig_pos>
        <strand></strand>
        <context>AAGTTACTTT[A/G]TTAGATAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTGTGGAGCTAATCACAGTTTTATACCTATTGCTCTGGAAGTTACTTT</left_flank>
        <right_flank>TTAGATAATTTTAAGAGATGATGTTTTGGTACTATAGAATAATTTAGCTT</right_flank>
        <qual_score>46</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTAAAAGTAAAAAAATTGAGTATCAATTTGGTGAATTACTATGTAGTATTTTTCCTACTATTATTTTATTAATGCAGATAGTTCCTTCACTAAGTTTGTTATACTACTATGGTTTAATAAATTTAGATAGGAATTTAACAGTTAAAGTTACCGGACATCAGTGGTATTGAAGCTATGAGTATAGAGATATCCCTGGCTTAGAATTTGATTCTTATATAAAATCTTTAGATCAGCTAAATTTAGGAGAACCTCGTTTATTAGAAGTTGATAACCGTTGTGTAATTCCTTGTGATACTAATATTCGTTTTTGTATTACCTCGGCTGATGTTATTCATGCTTGAGCCCTAAATTCATTATCAGTAAAATTAGATGCTATAAGAGGTATTTTAAGAACCTTTAGTTATAGTTTTCCTATGGTGGGGGTATTCTATGGACAATGTTCAGAGATTTGTGGAGCTAATCACAGTTTTATACCTATTGCTCTGGAAGTTACTTTATTAGATAATTTTAAGAGATGATGTTTTGGTACTATAGAATAATTTAGCTTAATAGTTTATTTTAAAATGTTTACTTGTGGTGTAAAAGAAATTTAGAGCTTTAAAATTTATTTATTTAAATATTGGTATTGCATACTATTACAATAAAATTTCATTTTTATGAAAAATAGAAACAAAGGGTAGAGTAAAAGTTAGTTTTATTGTTTCATACTAAAAATCACTTTTACTAGAGTTGATATGTCGACCTTTGTGATAACTGTTTTTATTATTATATTAGAAAATTATATATTGCATATTTATTTTAGGAAAATTAAAATTTGAAGTGTTTTGATTTTATGTTTTACAACATTTTCCTAATTTTATTTATTCATACTACTTTATTTAATAATACTTTATTAAATACATAATTTGTAAATTAGTAAATTTTATAAATATTATTTATTATTAAAATATAATTGAAGAACTTGAAGTCTTGATCAAATGTTTTTTAAAGACTTAGG</canonical>
            <polymorphic>ATTTTAAAAGTAAAAAAATTGAGTATCAATTTGGTGAATTACTATGTAGTATTTTTCCTACTATTATTTTATTAATGCAGATAGTTCCTTCACTAAGTTTGTTATACTACTATGGTTTAATAAATTTAGATAGGAATTTAACAGTTAAAGTTACCGGACATCAGTGGTATTGAAGCTATGAGTATAGAGATATCCCTGGCTTAGAATTTGATTCTTATATAAAATCTTTAGATCAGCTAAATTTAGGAGAACCTCGTTTATTAGAAGTTGATAACCGTTGTGTAATTCCTTGTGATACTAATATTCGTTTTTGTATTACCTCGGCTGATGTTATTCATGCTTGAGCCCTAAATTCATTATCAGTAAAATTAGATGCTATAAGAGGTATTTTAAGAACCTTTAGTTATAGTTTTCCTATGGTGGGGGTATTCTATGGACAATGTTCAGAGATTTGTGGAGCTAATCACAGTTTTATACCTATTGCTCTGGAAGTTACTTTRTTAGATAATTTTAAGAGATGATGTTTTGGTACTATAGAATAATTTAGCTTAATAGTTTATTTTAAAATGTTTACTTGTGGTGTAAAAGAAATTTAGAGCTTTAAAATTTATTTATTTAAATATTGGTATTGCATACTATTACAATAAAATTTCATTTTTATGAAAAATAGAAACAAAGGGTAGAGTAAAAGTTAGTTTTATTGTTTCATACTAAAAATCACTTTTACTAGAGTTGATATGTCGACCTTTGTGATAACTGTTTTTATTATTATATTAGAAAATTATATATTGCATATTTATTTTAGGAAAATTAAAATTTGAAGTGTTTTGATTTTATGTTTTACAACATTTTCCTAATTTTATTTATTCATACTACTTTATTTAATAATACTTTATTAAATACATAATTTGTAAATTAGTAAATTTTATAAATATTATTTATTATTAAAATATAATTGAAGAACTTGAAGTCTTGATCAAATGTTTTTTAAAGACTTAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGACAATGTTCAGAGATTTG</pcr_primer_p1>
		<pcr_primer_p2>CTACCCTTTGTTTCTATTTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGACAATGTTCAGAGATTTGTGGAGCTAATCACAGTTTTATACCTATTGCTCTGGAAGTTACTTTATTAGATAATTTTAAGAGATGATGTTTTGGTACTATAGAATAATTTAGCTTAATAGTTTATTTTAAAATGTTTACTTGTGGTGTAAAAGAAATTTAGAGCTTTAAAATTTATTTATTTAAATATTGGTATTGCATACTATTACAATAAAATTTCATTTTTATGAAAAATAGAAACAAAGGGTAG</canonical_amplicon>
		<polymorphic_amplicon>TGGACAATGTTCAGAGATTTGTGGAGCTAATCACAGTTTTATACCTATTGCTCTGGAAGTTACTTTRTTAGATAATTTTAAGAGATGATGTTTTGGTACTATAGAATAATTTAGCTTAATAGTTTATTTTAAAATGTTTACTTGTGGTGTAAAAGAAATTTAGAGCTTTAAAATTTATTTATTTAAATATTGGTATTGCATACTATTACAATAAAATTTCATTTTTATGAAAAATAGAAACAAAGGGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32468</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>3820</contig_pos>
        <strand></strand>
        <context>ATCACTTTTA[C/T]TAGAGTTGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGGTAGAGTAAAAGTTAGTTTTATTGTTTCATACTAAAAATCACTTTTA</left_flank>
        <right_flank>TAGAGTTGATATGTCGACCTTTGTGATAACTGTTTTTATTATTATATTAG</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAGATCAGCTAAATTTAGGAGAACCTCGTTTATTAGAAGTTGATAACCGTTGTGTAATTCCTTGTGATACTAATATTCGTTTTTGTATTACCTCGGCTGATGTTATTCATGCTTGAGCCCTAAATTCATTATCAGTAAAATTAGATGCTATAAGAGGTATTTTAAGAACCTTTAGTTATAGTTTTCCTATGGTGGGGGTATTCTATGGACAATGTTCAGAGATTTGTGGAGCTAATCACAGTTTTATACCTATTGCTCTGGAAGTTACTTTATTAGATAATTTTAAGAGATGATGTTTTGGTACTATAGAATAATTTAGCTTAATAGTTTATTTTAAAATGTTTACTTGTGGTGTAAAAGAAATTTAGAGCTTTAAAATTTATTTATTTAAATATTGGTATTGCATACTATTACAATAAAATTTCATTTTTATGAAAAATAGAAACAAAGGGTAGAGTAAAAGTTAGTTTTATTGTTTCATACTAAAAATCACTTTTACTAGAGTTGATATGTCGACCTTTGTGATAACTGTTTTTATTATTATATTAGAAAATTATATATTGCATATTTATTTTAGGAAAATTAAAATTTGAAGTGTTTTGATTTTATGTTTTACAACATTTTCCTAATTTTATTTATTCATACTACTTTATTTAATAATACTTTATTAAATACATAATTTGTAAATTAGTAAATTTTATAAATATTATTTATTATTAAAATATAATTGAAGAACTTGAAGTCTTGATCAAATGTTTTTTAAAGACTTAGGCTTTATATTAAAGCTGGCTTCTGCCCTATGATATTTAAATGGCAGTCTTAGCGTGAGGACATTAAGGTAGCAAAATAATTTGTGCTTTTATTGAGTTCCAGTATGAATGAAGTTATTGGTTAGTTCTATTTATGTTTTATTTTTGAATTTAATTTTTATTTAAGAAAAAATAAATATACTTATACAAAGATAAGTCTTCGGAAATTCTGTTATTATAAAATTTAAAG</canonical>
            <polymorphic>TTAGATCAGCTAAATTTAGGAGAACCTCGTTTATTAGAAGTTGATAACCGTTGTGTAATTCCTTGTGATACTAATATTCGTTTTTGTATTACCTCGGCTGATGTTATTCATGCTTGAGCCCTAAATTCATTATCAGTAAAATTAGATGCTATAAGAGGTATTTTAAGAACCTTTAGTTATAGTTTTCCTATGGTGGGGGTATTCTATGGACAATGTTCAGAGATTTGTGGAGCTAATCACAGTTTTATACCTATTGCTCTGGAAGTTACTTTATTAGATAATTTTAAGAGATGATGTTTTGGTACTATAGAATAATTTAGCTTAATAGTTTATTTTAAAATGTTTACTTGTGGTGTAAAAGAAATTTAGAGCTTTAAAATTTATTTATTTAAATATTGGTATTGCATACTATTACAATAAAATTTCATTTTTATGAAAAATAGAAACAAAGGGTAGAGTAAAAGTTAGTTTTATTGTTTCATACTAAAAATCACTTTTAYTAGAGTTGATATGTCGACCTTTGTGATAACTGTTTTTATTATTATATTAGAAAATTATATATTGCATATTTATTTTAGGAAAATTAAAATTTGAAGTGTTTTGATTTTATGTTTTACAACATTTTCCTAATTTTATTTATTCATACTACTTTATTTAATAATACTTTATTAAATACATAATTTGTAAATTAGTAAATTTTATAAATATTATTTATTATTAAAATATAATTGAAGAACTTGAAGTCTTGATCAAATGTTTTTTAAAGACTTAGGCTTTATATTAAAGCTGGCTTCTGCCCTATGATATTTAAATGGCAGTCTTAGCGTGAGGACATTAAGGTAGCAAAATAATTTGTGCTTTTATTGAGTTCCAGTATGAATGAAGTTATTGGTTAGTTCTATTTATGTTTTATTTTTGAATTTAATTTTTATTTAAGAAAAAATAAATATACTTATACAAAGATAAGTCTTCGGAAATTCTGTTATTATAAAATTTAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAACAAAGGGTAGAGTAAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>AAAACATTTGATCAAGACTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>318</pcr_amplicon_size>
		<canonical_amplicon>GAAACAAAGGGTAGAGTAAAAGTTAGTTTTATTGTTTCATACTAAAAATCACTTTTACTAGAGTTGATATGTCGACCTTTGTGATAACTGTTTTTATTATTATATTAGAAAATTATATATTGCATATTTATTTTAGGAAAATTAAAATTTGAAGTGTTTTGATTTTATGTTTTACAACATTTTCCTAATTTTATTTATTCATACTACTTTATTTAATAATACTTTATTAAATACATAATTTGTAAATTAGTAAATTTTATAAATATTATTTATTATTAAAATATAATTGAAGAACTTGAAGTCTTGATCAAATGTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAAACAAAGGGTAGAGTAAAAGTTAGTTTTATTGTTTCATACTAAAAATCACTTTTAYTAGAGTTGATATGTCGACCTTTGTGATAACTGTTTTTATTATTATATTAGAAAATTATATATTGCATATTTATTTTAGGAAAATTAAAATTTGAAGTGTTTTGATTTTATGTTTTACAACATTTTCCTAATTTTATTTATTCATACTACTTTATTTAATAATACTTTATTAAATACATAATTTGTAAATTAGTAAATTTTATAAATATTATTTATTATTAAAATATAATTGAAGAACTTGAAGTCTTGATCAAATGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32469</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>3862</contig_pos>
        <strand></strand>
        <context>Gtttttatta[T/C]tatattagaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CACTTTTACTAGAGTTGATATGTCGACCTTTGTGATAACTGTTTTTATTA</left_flank>
        <right_flank>TATATTAGAAAATTATATATTGCATATTTATTTTAGGAAAATTAAAATTT</right_flank>
        <qual_score>47</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAACCGTTGTGTAATTCCTTGTGATACTAATATTCGTTTTTGTATTACCTCGGCTGATGTTATTCATGCTTGAGCCCTAAATTCATTATCAGTAAAATTAGATGCTATAAGAGGTATTTTAAGAACCTTTAGTTATAGTTTTCCTATGGTGGGGGTATTCTATGGACAATGTTCAGAGATTTGTGGAGCTAATCACAGTTTTATACCTATTGCTCTGGAAGTTACTTTATTAGATAATTTTAAGAGATGATGTTTTGGTACTATAGAATAATTTAGCTTAATAGTTTATTTTAAAATGTTTACTTGTGGTGTAAAAGAAATTTAGAGCTTTAAAATTTATTTATTTAAATATTGGTATTGCATACTATTACAATAAAATTTCATTTTTATGAAAAATAGAAACAAAGGGTAGAGTAAAAGTTAGTTTTATTGTTTCATACTAAAAATCACTTTTACTAGAGTTGATATGTCGACCTTTGTGATAACTGTTTTTATTATTATATTAGAAAATTATATATTGCATATTTATTTTAGGAAAATTAAAATTTGAAGTGTTTTGATTTTATGTTTTACAACATTTTCCTAATTTTATTTATTCATACTACTTTATTTAATAATACTTTATTAAATACATAATTTGTAAATTAGTAAATTTTATAAATATTATTTATTATTAAAATATAATTGAAGAACTTGAAGTCTTGATCAAATGTTTTTTAAAGACTTAGGCTTTATATTAAAGCTGGCTTCTGCCCTATGATATTTAAATGGCAGTCTTAGCGTGAGGACATTAAGGTAGCAAAATAATTTGTGCTTTTATTGAGTTCCAGTATGAATGAAGTTATTGGTTAGTTCTATTTATGTTTTATTTTTGAATTTAATTTTTATTTAAGAAAAAATAAATATACTTATACAAAGATAAGTCTTCGGAAATTCTGTTATTATAAAATTTAAAGATTTTATAATAAATTTTCTAGGGCAGAATATTATATAATAGT</canonical>
            <polymorphic>GATAACCGTTGTGTAATTCCTTGTGATACTAATATTCGTTTTTGTATTACCTCGGCTGATGTTATTCATGCTTGAGCCCTAAATTCATTATCAGTAAAATTAGATGCTATAAGAGGTATTTTAAGAACCTTTAGTTATAGTTTTCCTATGGTGGGGGTATTCTATGGACAATGTTCAGAGATTTGTGGAGCTAATCACAGTTTTATACCTATTGCTCTGGAAGTTACTTTATTAGATAATTTTAAGAGATGATGTTTTGGTACTATAGAATAATTTAGCTTAATAGTTTATTTTAAAATGTTTACTTGTGGTGTAAAAGAAATTTAGAGCTTTAAAATTTATTTATTTAAATATTGGTATTGCATACTATTACAATAAAATTTCATTTTTATGAAAAATAGAAACAAAGGGTAGAGTAAAAGTTAGTTTTATTGTTTCATACTAAAAATCACTTTTACTAGAGTTGATATGTCGACCTTTGTGATAACTGTTTTTATTAYTATATTAGAAAATTATATATTGCATATTTATTTTAGGAAAATTAAAATTTGAAGTGTTTTGATTTTATGTTTTACAACATTTTCCTAATTTTATTTATTCATACTACTTTATTTAATAATACTTTATTAAATACATAATTTGTAAATTAGTAAATTTTATAAATATTATTTATTATTAAAATATAATTGAAGAACTTGAAGTCTTGATCAAATGTTTTTTAAAGACTTAGGCTTTATATTAAAGCTGGCTTCTGCCCTATGATATTTAAATGGCAGTCTTAGCGTGAGGACATTAAGGTAGCAAAATAATTTGTGCTTTTATTGAGTTCCAGTATGAATGAAGTTATTGGTTAGTTCTATTTATGTTTTATTTTTGAATTTAATTTTTATTTAAGAAAAAATAAATATACTTATACAAAGATAAGTCTTCGGAAATTCTGTTATTATAAAATTTAAAGATTTTATAATAAATTTTCTAGGGCAGAATATTATATAATAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACAAAGGGTAGAGTAAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>AAAACATTTGATCAAGACTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>318</pcr_amplicon_size>
		<canonical_amplicon>GAAACAAAGGGTAGAGTAAAAGTTAGTTTTATTGTTTCATACTAAAAATCACTTTTACTAGAGTTGATATGTCGACCTTTGTGATAACTGTTTTTATTATTATATTAGAAAATTATATATTGCATATTTATTTTAGGAAAATTAAAATTTGAAGTGTTTTGATTTTATGTTTTACAACATTTTCCTAATTTTATTTATTCATACTACTTTATTTAATAATACTTTATTAAATACATAATTTGTAAATTAGTAAATTTTATAAATATTATTTATTATTAAAATATAATTGAAGAACTTGAAGTCTTGATCAAATGTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAAACAAAGGGTAGAGTAAAAGTTAGTTTTATTGTTTCATACTAAAAATCACTTTTACTAGAGTTGATATGTCGACCTTTGTGATAACTGTTTTTATTAYTATATTAGAAAATTATATATTGCATATTTATTTTAGGAAAATTAAAATTTGAAGTGTTTTGATTTTATGTTTTACAACATTTTCCTAATTTTATTTATTCATACTACTTTATTTAATAATACTTTATTAAATACATAATTTGTAAATTAGTAAATTTTATAAATATTATTTATTATTAAAATATAATTGAAGAACTTGAAGTCTTGATCAAATGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32470</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>3923</contig_pos>
        <strand></strand>
        <context>GAAGTGTTTT[G/A]ATTYTATGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATTATATATTGCATATTTATTTTAGGAAAATTAAAATTTGAAGTGTTTT</left_flank>
        <right_flank>ATTTTATGTTTTACAACATTTTCCTAATTTTATTTATTCATACTACTTTA</right_flank>
        <qual_score>46</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATTCATGCTTGAGCCCTAAATTCATTATCAGTAAAATTAGATGCTATAAGAGGTATTTTAAGAACCTTTAGTTATAGTTTTCCTATGGTGGGGGTATTCTATGGACAATGTTCAGAGATTTGTGGAGCTAATCACAGTTTTATACCTATTGCTCTGGAAGTTACTTTATTAGATAATTTTAAGAGATGATGTTTTGGTACTATAGAATAATTTAGCTTAATAGTTTATTTTAAAATGTTTACTTGTGGTGTAAAAGAAATTTAGAGCTTTAAAATTTATTTATTTAAATATTGGTATTGCATACTATTACAATAAAATTTCATTTTTATGAAAAATAGAAACAAAGGGTAGAGTAAAAGTTAGTTTTATTGTTTCATACTAAAAATCACTTTTACTAGAGTTGATATGTCGACCTTTGTGATAACTGTTTTTATTATTATATTAGAAAATTATATATTGCATATTTATTTTAGGAAAATTAAAATTTGAAGTGTTTTGATTTTATGTTTTACAACATTTTCCTAATTTTATTTATTCATACTACTTTATTTAATAATACTTTATTAAATACATAATTTGTAAATTAGTAAATTTTATAAATATTATTTATTATTAAAATATAATTGAAGAACTTGAAGTCTTGATCAAATGTTTTTTAAAGACTTAGGCTTTATATTAAAGCTGGCTTCTGCCCTATGATATTTAAATGGCAGTCTTAGCGTGAGGACATTAAGGTAGCAAAATAATTTGTGCTTTTATTGAGTTCCAGTATGAATGAAGTTATTGGTTAGTTCTATTTATGTTTTATTTTTGAATTTAATTTTTATTTAAGAAAAAATAAATATACTTATACAAAGATAAGTCTTCGGAAATTCTGTTATTATAAAATTTAAAGATTTTATAATAAATTTTCTAGGGCAGAATATTATATAATAGTATTTTACTATATTTAATTTAAAGAATTACTCCGGAGTTAACAGAAAATCATACCTAATCTA</canonical>
            <polymorphic>TTATTCATGCTTGAGCCCTAAATTCATTATCAGTAAAATTAGATGCTATAAGAGGTATTTTAAGAACCTTTAGTTATAGTTTTCCTATGGTGGGGGTATTCTATGGACAATGTTCAGAGATTTGTGGAGCTAATCACAGTTTTATACCTATTGCTCTGGAAGTTACTTTATTAGATAATTTTAAGAGATGATGTTTTGGTACTATAGAATAATTTAGCTTAATAGTTTATTTTAAAATGTTTACTTGTGGTGTAAAAGAAATTTAGAGCTTTAAAATTTATTTATTTAAATATTGGTATTGCATACTATTACAATAAAATTTCATTTTTATGAAAAATAGAAACAAAGGGTAGAGTAAAAGTTAGTTTTATTGTTTCATACTAAAAATCACTTTTACTAGAGTTGATATGTCGACCTTTGTGATAACTGTTTTTATTATTATATTAGAAAATTATATATTGCATATTTATTTTAGGAAAATTAAAATTTGAAGTGTTTTRATTTTATGTTTTACAACATTTTCCTAATTTTATTTATTCATACTACTTTATTTAATAATACTTTATTAAATACATAATTTGTAAATTAGTAAATTTTATAAATATTATTTATTATTAAAATATAATTGAAGAACTTGAAGTCTTGATCAAATGTTTTTTAAAGACTTAGGCTTTATATTAAAGCTGGCTTCTGCCCTATGATATTTAAATGGCAGTCTTAGCGTGAGGACATTAAGGTAGCAAAATAATTTGTGCTTTTATTGAGTTCCAGTATGAATGAAGTTATTGGTTAGTTCTATTTATGTTTTATTTTTGAATTTAATTTTTATTTAAGAAAAAATAAATATACTTATACAAAGATAAGTCTTCGGAAATTCTGTTATTATAAAATTTAAAGATTTTATAATAAATTTTCTAGGGCAGAATATTATATAATAGTATTTTACTATATTTAATTTAAAGAATTACTCCGGAGTTAACAGAAAATCATACCTAATCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATGTCGACCTTTGTGATAACT</pcr_primer_p1>
		<pcr_primer_p2>AAAACATTTGATCAAGACTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATATGTCGACCTTTGTGATAACTGTTTTTATTATTATATTAGAAAATTATATATTGCATATTTATTTTAGGAAAATTAAAATTTGAAGTGTTTTGATTTTATGTTTTACAACATTTTCCTAATTTTATTTATTCATACTACTTTATTTAATAATACTTTATTAAATACATAATTTGTAAATTAGTAAATTTTATAAATATTATTTATTATTAAAATATAATTGAAGAACTTGAAGTCTTGATCAAATGTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATATGTCGACCTTTGTGATAACTGTTTTTATTATTATATTAGAAAATTATATATTGCATATTTATTTTAGGAAAATTAAAATTTGAAGTGTTTTRATTTTATGTTTTACAACATTTTCCTAATTTTATTTATTCATACTACTTTATTTAATAATACTTTATTAAATACATAATTTGTAAATTAGTAAATTTTATAAATATTATTTATTATTAAAATATAATTGAAGAACTTGAAGTCTTGATCAAATGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32471</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>3927</contig_pos>
        <strand></strand>
        <context>TGTTTTRATT[T/C]TATGTTTTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATATATTGCATATTTATTTTAGGAAAATTAAAATTTGAAGTGTTTTGATT</left_flank>
        <right_flank>TATGTTTTACAACATTTTCCTAATTTTATTTATTCATACTACTTTATTTA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATGCTTGAGCCCTAAATTCATTATCAGTAAAATTAGATGCTATAAGAGGTATTTTAAGAACCTTTAGTTATAGTTTTCCTATGGTGGGGGTATTCTATGGACAATGTTCAGAGATTTGTGGAGCTAATCACAGTTTTATACCTATTGCTCTGGAAGTTACTTTATTAGATAATTTTAAGAGATGATGTTTTGGTACTATAGAATAATTTAGCTTAATAGTTTATTTTAAAATGTTTACTTGTGGTGTAAAAGAAATTTAGAGCTTTAAAATTTATTTATTTAAATATTGGTATTGCATACTATTACAATAAAATTTCATTTTTATGAAAAATAGAAACAAAGGGTAGAGTAAAAGTTAGTTTTATTGTTTCATACTAAAAATCACTTTTACTAGAGTTGATATGTCGACCTTTGTGATAACTGTTTTTATTATTATATTAGAAAATTATATATTGCATATTTATTTTAGGAAAATTAAAATTTGAAGTGTTTTGATTTTATGTTTTACAACATTTTCCTAATTTTATTTATTCATACTACTTTATTTAATAATACTTTATTAAATACATAATTTGTAAATTAGTAAATTTTATAAATATTATTTATTATTAAAATATAATTGAAGAACTTGAAGTCTTGATCAAATGTTTTTTAAAGACTTAGGCTTTATATTAAAGCTGGCTTCTGCCCTATGATATTTAAATGGCAGTCTTAGCGTGAGGACATTAAGGTAGCAAAATAATTTGTGCTTTTATTGAGTTCCAGTATGAATGAAGTTATTGGTTAGTTCTATTTATGTTTTATTTTTGAATTTAATTTTTATTTAAGAAAAAATAAATATACTTATACAAAGATAAGTCTTCGGAAATTCTGTTATTATAAAATTTAAAGATTTTATAATAAATTTTCTAGGGCAGAATATTATATAATAGTATTTTACTATATTTAATTTAAAGAATTACTCCGGAGTTAACAGAAAATCATACCTAATCTAGTTC</canonical>
            <polymorphic>TCATGCTTGAGCCCTAAATTCATTATCAGTAAAATTAGATGCTATAAGAGGTATTTTAAGAACCTTTAGTTATAGTTTTCCTATGGTGGGGGTATTCTATGGACAATGTTCAGAGATTTGTGGAGCTAATCACAGTTTTATACCTATTGCTCTGGAAGTTACTTTATTAGATAATTTTAAGAGATGATGTTTTGGTACTATAGAATAATTTAGCTTAATAGTTTATTTTAAAATGTTTACTTGTGGTGTAAAAGAAATTTAGAGCTTTAAAATTTATTTATTTAAATATTGGTATTGCATACTATTACAATAAAATTTCATTTTTATGAAAAATAGAAACAAAGGGTAGAGTAAAAGTTAGTTTTATTGTTTCATACTAAAAATCACTTTTACTAGAGTTGATATGTCGACCTTTGTGATAACTGTTTTTATTATTATATTAGAAAATTATATATTGCATATTTATTTTAGGAAAATTAAAATTTGAAGTGTTTTGATTYTATGTTTTACAACATTTTCCTAATTTTATTTATTCATACTACTTTATTTAATAATACTTTATTAAATACATAATTTGTAAATTAGTAAATTTTATAAATATTATTTATTATTAAAATATAATTGAAGAACTTGAAGTCTTGATCAAATGTTTTTTAAAGACTTAGGCTTTATATTAAAGCTGGCTTCTGCCCTATGATATTTAAATGGCAGTCTTAGCGTGAGGACATTAAGGTAGCAAAATAATTTGTGCTTTTATTGAGTTCCAGTATGAATGAAGTTATTGGTTAGTTCTATTTATGTTTTATTTTTGAATTTAATTTTTATTTAAGAAAAAATAAATATACTTATACAAAGATAAGTCTTCGGAAATTCTGTTATTATAAAATTTAAAGATTTTATAATAAATTTTCTAGGGCAGAATATTATATAATAGTATTTTACTATATTTAATTTAAAGAATTACTCCGGAGTTAACAGAAAATCATACCTAATCTAGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATGTCGACCTTTGTGATAACT</pcr_primer_p1>
		<pcr_primer_p2>AAAACATTTGATCAAGACTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATATGTCGACCTTTGTGATAACTGTTTTTATTATTATATTAGAAAATTATATATTGCATATTTATTTTAGGAAAATTAAAATTTGAAGTGTTTTGATTTTATGTTTTACAACATTTTCCTAATTTTATTTATTCATACTACTTTATTTAATAATACTTTATTAAATACATAATTTGTAAATTAGTAAATTTTATAAATATTATTTATTATTAAAATATAATTGAAGAACTTGAAGTCTTGATCAAATGTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATATGTCGACCTTTGTGATAACTGTTTTTATTATTATATTAGAAAATTATATATTGCATATTTATTTTAGGAAAATTAAAATTTGAAGTGTTTTGATTYTATGTTTTACAACATTTTCCTAATTTTATTTATTCATACTACTTTATTTAATAATACTTTATTAAATACATAATTTGTAAATTAGTAAATTTTATAAATATTATTTATTATTAAAATATAATTGAAGAACTTGAAGTCTTGATCAAATGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32472</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>3969</contig_pos>
        <strand></strand>
        <context>attcatacta[C/T]tttatttaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGATTTTATGTTTTACAACATTTTCCTAATTTTATTTATTCATACTA</left_flank>
        <right_flank>TTTATTTAATAATACTTTATTAAATACATAATTTGTAAATTAGTAAATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAAGAGGTATTTTAAGAACCTTTAGTTATAGTTTTCCTATGGTGGGGGTATTCTATGGACAATGTTCAGAGATTTGTGGAGCTAATCACAGTTTTATACCTATTGCTCTGGAAGTTACTTTATTAGATAATTTTAAGAGATGATGTTTTGGTACTATAGAATAATTTAGCTTAATAGTTTATTTTAAAATGTTTACTTGTGGTGTAAAAGAAATTTAGAGCTTTAAAATTTATTTATTTAAATATTGGTATTGCATACTATTACAATAAAATTTCATTTTTATGAAAAATAGAAACAAAGGGTAGAGTAAAAGTTAGTTTTATTGTTTCATACTAAAAATCACTTTTACTAGAGTTGATATGTCGACCTTTGTGATAACTGTTTTTATTATTATATTAGAAAATTATATATTGCATATTTATTTTAGGAAAATTAAAATTTGAAGTGTTTTGATTTTATGTTTTACAACATTTTCCTAATTTTATTTATTCATACTACTTTATTTAATAATACTTTATTAAATACATAATTTGTAAATTAGTAAATTTTATAAATATTATTTATTATTAAAATATAATTGAAGAACTTGAAGTCTTGATCAAATGTTTTTTAAAGACTTAGGCTTTATATTAAAGCTGGCTTCTGCCCTATGATATTTAAATGGCAGTCTTAGCGTGAGGACATTAAGGTAGCAAAATAATTTGTGCTTTTATTGAGTTCCAGTATGAATGAAGTTATTGGTTAGTTCTATTTATGTTTTATTTTTGAATTTAATTTTTATTTAAGAAAAAATAAATATACTTATACAAAGATAAGTCTTCGGAAATTCTGTTATTATAAAATTTAAAGATTTTATAATAAATTTTCTAGGGCAGAATATTATATAATAGTATTTTACTATATTTAATTTAAAGAATTACTCCGGAGTTAACAGAAAATCATACCTAATCTAGTTCTTATAGTAAGGTAAGTTTTACATCGATGTTGTATTCAGATAA</canonical>
            <polymorphic>TATAAGAGGTATTTTAAGAACCTTTAGTTATAGTTTTCCTATGGTGGGGGTATTCTATGGACAATGTTCAGAGATTTGTGGAGCTAATCACAGTTTTATACCTATTGCTCTGGAAGTTACTTTATTAGATAATTTTAAGAGATGATGTTTTGGTACTATAGAATAATTTAGCTTAATAGTTTATTTTAAAATGTTTACTTGTGGTGTAAAAGAAATTTAGAGCTTTAAAATTTATTTATTTAAATATTGGTATTGCATACTATTACAATAAAATTTCATTTTTATGAAAAATAGAAACAAAGGGTAGAGTAAAAGTTAGTTTTATTGTTTCATACTAAAAATCACTTTTACTAGAGTTGATATGTCGACCTTTGTGATAACTGTTTTTATTATTATATTAGAAAATTATATATTGCATATTTATTTTAGGAAAATTAAAATTTGAAGTGTTTTGATTTTATGTTTTACAACATTTTCCTAATTTTATTTATTCATACTAYTTTATTTAATAATACTTTATTAAATACATAATTTGTAAATTAGTAAATTTTATAAATATTATTTATTATTAAAATATAATTGAAGAACTTGAAGTCTTGATCAAATGTTTTTTAAAGACTTAGGCTTTATATTAAAGCTGGCTTCTGCCCTATGATATTTAAATGGCAGTCTTAGCGTGAGGACATTAAGGTAGCAAAATAATTTGTGCTTTTATTGAGTTCCAGTATGAATGAAGTTATTGGTTAGTTCTATTTATGTTTTATTTTTGAATTTAATTTTTATTTAAGAAAAAATAAATATACTTATACAAAGATAAGTCTTCGGAAATTCTGTTATTATAAAATTTAAAGATTTTATAATAAATTTTCTAGGGCAGAATATTATATAATAGTATTTTACTATATTTAATTTAAAGAATTACTCCGGAGTTAACAGAAAATCATACCTAATCTAGTTCTTATAGTAAGGTAAGTTTTACATCGATGTTGTATTCAGATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATGTCGACCTTTGTGATAACT</pcr_primer_p1>
		<pcr_primer_p2>AAAACATTTGATCAAGACTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATATGTCGACCTTTGTGATAACTGTTTTTATTATTATATTAGAAAATTATATATTGCATATTTATTTTAGGAAAATTAAAATTTGAAGTGTTTTGATTTTATGTTTTACAACATTTTCCTAATTTTATTTATTCATACTACTTTATTTAATAATACTTTATTAAATACATAATTTGTAAATTAGTAAATTTTATAAATATTATTTATTATTAAAATATAATTGAAGAACTTGAAGTCTTGATCAAATGTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATATGTCGACCTTTGTGATAACTGTTTTTATTATTATATTAGAAAATTATATATTGCATATTTATTTTAGGAAAATTAAAATTTGAAGTGTTTTGATTTTATGTTTTACAACATTTTCCTAATTTTATTTATTCATACTAYTTTATTTAATAATACTTTATTAAATACATAATTTGTAAATTAGTAAATTTTATAAATATTATTTATTATTAAAATATAATTGAAGAACTTGAAGTCTTGATCAAATGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32473</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>4373</contig_pos>
        <strand></strand>
        <context>attttactat[A/G]tttaatttaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTATAATAAATTTTCTAGGGCAGAATATTATATAATAGTATTTTACTAT</left_flank>
        <right_flank>TTTAATTTAAAGAATTACTCCGGAGTTAACAGAAAATCATACCTAATCTA</right_flank>
        <qual_score>49</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATATATTGCATATTTATTTTAGGAAAATTAAAATTTGAAGTGTTTTGATTTTATGTTTTACAACATTTTCCTAATTTTATTTATTCATACTACTTTATTTAATAATACTTTATTAAATACATAATTTGTAAATTAGTAAATTTTATAAATATTATTTATTATTAAAATATAATTGAAGAACTTGAAGTCTTGATCAAATGTTTTTTAAAGACTTAGGCTTTATATTAAAGCTGGCTTCTGCCCTATGATATTTAAATGGCAGTCTTAGCGTGAGGACATTAAGGTAGCAAAATAATTTGTGCTTTTATTGAGTTCCAGTATGAATGAAGTTATTGGTTAGTTCTATTTATGTTTTATTTTTGAATTTAATTTTTATTTAAGAAAAAATAAATATACTTATACAAAGATAAGTCTTCGGAAATTCTGTTATTATAAAATTTAAAGATTTTATAATAAATTTTCTAGGGCAGAATATTATATAATAGTATTTTACTATATTTAATTTAAAGAATTACTCCGGAGTTAACAGAAAATCATACCTAATCTAGTTCTTATAGTAAGGTAAGTTTTACATCGATGTTGTATTCAGATAATCTAAGAAAGGAGAAGGCTTAGTAGTTTAGACTGTTCTTCTATTAAATAATCTGACGTGATATTAGTTTAATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGA</canonical>
            <polymorphic>ATTATATATTGCATATTTATTTTAGGAAAATTAAAATTTGAAGTGTTTTGATTTTATGTTTTACAACATTTTCCTAATTTTATTTATTCATACTACTTTATTTAATAATACTTTATTAAATACATAATTTGTAAATTAGTAAATTTTATAAATATTATTTATTATTAAAATATAATTGAAGAACTTGAAGTCTTGATCAAATGTTTTTTAAAGACTTAGGCTTTATATTAAAGCTGGCTTCTGCCCTATGATATTTAAATGGCAGTCTTAGCGTGAGGACATTAAGGTAGCAAAATAATTTGTGCTTTTATTGAGTTCCAGTATGAATGAAGTTATTGGTTAGTTCTATTTATGTTTTATTTTTGAATTTAATTTTTATTTAAGAAAAAATAAATATACTTATACAAAGATAAGTCTTCGGAAATTCTGTTATTATAAAATTTAAAGATTTTATAATAAATTTTCTAGGGCAGAATATTATATAATAGTATTTTACTATRTTTAATTTAAAGAATTACTCCGGAGTTAACAGAAAATCATACCTAATCTAGTTCTTATAGTAAGGTAAGTTTTACATCGATGTTGTATTCAGATAATCTAAGAAAGGAGAAGGCTTAGTAGTTTAGACTGTTCTTCTATTAAATAATCTGACGTGATATTAGTTTAATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGATAAGTCTTCGGAAATTCT</pcr_primer_p1>
		<pcr_primer_p2>GAACAGTCTAAACTACTAAGCCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>AAAGATAAGTCTTCGGAAATTCTGTTATTATAAAATTTAAAGATTTTATAATAAATTTTCTAGGGCAGAATATTATATAATAGTATTTTACTATATTTAATTTAAAGAATTACTCCGGAGTTAACAGAAAATCATACCTAATCTAGTTCTTATAGTAAGGTAAGTTTTACATCGATGTTGTATTCAGATAATCTAAGAAAGGAGAAGGCTTAGTAGTTTAGACTGTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAGATAAGTCTTCGGAAATTCTGTTATTATAAAATTTAAAGATTTTATAATAAATTTTCTAGGGCAGAATATTATATAATAGTATTTTACTATRTTTAATTTAAAGAATTACTCCGGAGTTAACAGAAAATCATACCTAATCTAGTTCTTATAGTAAGGTAAGTTTTACATCGATGTTGTATTCAGATAATCTAAGAAAGGAGAAGGCTTAGTAGTTTAGACTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32474</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>4512</contig_pos>
        <strand>+</strand>
        <context>TGTTCTTCTA[C/T]TAAATAATCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGATAATCTAAGAAAGGAGAAGGCTTAGTAGTTTAGACTGTTCTTCTA</left_flank>
        <right_flank>TAAATAATCTGACGTGATATTAGTTTAATTCATTGTGAGATAGAATTGTT</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAATTTTATAAATATTATTTATTATTAAAATATAATTGAAGAACTTGAAGTCTTGATCAAATGTTTTTTAAAGACTTAGGCTTTATATTAAAGCTGGCTTCTGCCCTATGATATTTAAATGGCAGTCTTAGCGTGAGGACATTAAGGTAGCAAAATAATTTGTGCTTTTATTGAGTTCCAGTATGAATGAAGTTATTGGTTAGTTCTATTTATGTTTTATTTTTGAATTTAATTTTTATTTAAGAAAAAATAAATATACTTATACAAAGATAAGTCTTCGGAAATTCTGTTATTATAAAATTTAAAGATTTTATAATAAATTTTCTAGGGCAGAATATTATATAATAGTATTTTACTATATTTAATTTAAAGAATTACTCCGGAGTTAACAGAAAATCATACCTAATCTAGTTCTTATAGTAAGGTAAGTTTTACATCGATGTTGTATTCAGATAATCTAAGAAAGGAGAAGGCTTAGTAGTTTAGACTGTTCTTCTATTAAATAATCTGACGTGATATTAGTTTAATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTAT</canonical>
            <polymorphic>TAAATTTTATAAATATTATTTATTATTAAAATATAATTGAAGAACTTGAAGTCTTGATCAAATGTTTTTTAAAGACTTAGGCTTTATATTAAAGCTGGCTTCTGCCCTATGATATTTAAATGGCAGTCTTAGCGTGAGGACATTAAGGTAGCAAAATAATTTGTGCTTTTATTGAGTTCCAGTATGAATGAAGTTATTGGTTAGTTCTATTTATGTTTTATTTTTGAATTTAATTTTTATTTAAGAAAAAATAAATATACTTATACAAAGATAAGTCTTCGGAAATTCTGTTATTATAAAATTTAAAGATTTTATAATAAATTTTCTAGGGCAGAATATTATATAATAGTATTTTACTATATTTAATTTAAAGAATTACTCCGGAGTTAACAGAAAATCATACCTAATCTAGTTCTTATAGTAAGGTAAGTTTTACATCGATGTTGTATTCAGATAATCTAAGAAAGGAGAAGGCTTAGTAGTTTAGACTGTTCTTCTAYTAAATAATCTGACGTGATATTAGTTTAATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>161 113 87 74 62 60 52 47 43 37 27 27 26 26 25 24 20 19 18 12 11 9 8 7 5</canonical_bands>
                <polymorphic_bands>161 138 87 74 62 60 52 47 43 37 27 27 26 26 24 20 19 18 12 11 9 8 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTATTCAGATAATCTAAGAAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>ATAACATAAAAAGCCAGCAATAA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TGTATTCAGATAATCTAAGAAAGGAGAAGGCTTAGTAGTTTAGACTGTTCTTCTATTAAATAATCTGACGTGATATTAGTTTAATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAT</canonical_amplicon>
		<polymorphic_amplicon>TGTATTCAGATAATCTAAGAAAGGAGAAGGCTTAGTAGTTTAGACTGTTCTTCTAYTAAATAATCTGACGTGATATTAGTTTAATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32475</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>4593</contig_pos>
        <strand>+</strand>
        <context>TTTAATACAT[C/T]TAGTACGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACAT</left_flank>
        <right_flank>TAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTATATTAAAGCTGGCTTCTGCCCTATGATATTTAAATGGCAGTCTTAGCGTGAGGACATTAAGGTAGCAAAATAATTTGTGCTTTTATTGAGTTCCAGTATGAATGAAGTTATTGGTTAGTTCTATTTATGTTTTATTTTTGAATTTAATTTTTATTTAAGAAAAAATAAATATACTTATACAAAGATAAGTCTTCGGAAATTCTGTTATTATAAAATTTAAAGATTTTATAATAAATTTTCTAGGGCAGAATATTATATAATAGTATTTTACTATATTTAATTTAAAGAATTACTCCGGAGTTAACAGAAAATCATACCTAATCTAGTTCTTATAGTAAGGTAAGTTTTACATCGATGTTGTATTCAGATAATCTAAGAAAGGAGAAGGCTTAGTAGTTTAGACTGTTCTTCTATTAAATAATCTGACGTGATATTAGTTTAATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAAT</canonical>
            <polymorphic>CTTTATATTAAAGCTGGCTTCTGCCCTATGATATTTAAATGGCAGTCTTAGCGTGAGGACATTAAGGTAGCAAAATAATTTGTGCTTTTATTGAGTTCCAGTATGAATGAAGTTATTGGTTAGTTCTATTTATGTTTTATTTTTGAATTTAATTTTTATTTAAGAAAAAATAAATATACTTATACAAAGATAAGTCTTCGGAAATTCTGTTATTATAAAATTTAAAGATTTTATAATAAATTTTCTAGGGCAGAATATTATATAATAGTATTTTACTATATTTAATTTAAAGAATTACTCCGGAGTTAACAGAAAATCATACCTAATCTAGTTCTTATAGTAAGGTAAGTTTTACATCGATGTTGTATTCAGATAATCTAAGAAAGGAGAAGGCTTAGTAGTTTAGACTGTTCTTCTATTAAATAATCTGACGTGATATTAGTTTAATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATYTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCTAAGAAAGGAGAAGGCTTA</pcr_primer_p1>
		<pcr_primer_p2>AATAACATAAAAAGCCAGCAATA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AATCTAAGAAAGGAGAAGGCTTAGTAGTTTAGACTGTTCTTCTATTAAATAATCTGACGTGATATTAGTTTAATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATT</canonical_amplicon>
		<polymorphic_amplicon>AATCTAAGAAAGGAGAAGGCTTAGTAGTTTAGACTGTTCTTCTATTAAATAATCTGACGTGATATTAGTTTAATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATYTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32476</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>4665</contig_pos>
        <strand>+</strand>
        <context>TTTTAATTAT[A/G]GTATTATTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTAT</left_flank>
        <right_flank>GTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTT</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATAATTTGTGCTTTTATTGAGTTCCAGTATGAATGAAGTTATTGGTTAGTTCTATTTATGTTTTATTTTTGAATTTAATTTTTATTTAAGAAAAAATAAATATACTTATACAAAGATAAGTCTTCGGAAATTCTGTTATTATAAAATTTAAAGATTTTATAATAAATTTTCTAGGGCAGAATATTATATAATAGTATTTTACTATATTTAATTTAAAGAATTACTCCGGAGTTAACAGAAAATCATACCTAATCTAGTTCTTATAGTAAGGTAAGTTTTACATCGATGTTGTATTCAGATAATCTAAGAAAGGAGAAGGCTTAGTAGTTTAGACTGTTCTTCTATTAAATAATCTGACGTGATATTAGTTTAATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACT</canonical>
            <polymorphic>AAATAATTTGTGCTTTTATTGAGTTCCAGTATGAATGAAGTTATTGGTTAGTTCTATTTATGTTTTATTTTTGAATTTAATTTTTATTTAAGAAAAAATAAATATACTTATACAAAGATAAGTCTTCGGAAATTCTGTTATTATAAAATTTAAAGATTTTATAATAAATTTTCTAGGGCAGAATATTATATAATAGTATTTTACTATATTTAATTTAAAGAATTACTCCGGAGTTAACAGAAAATCATACCTAATCTAGTTCTTATAGTAAGGTAAGTTTTACATCGATGTTGTATTCAGATAATCTAAGAAAGGAGAAGGCTTAGTAGTTTAGACTGTTCTTCTATTAAATAATCTGACGTGATATTAGTTTAATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATRGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTGATATTAGTTTAATTCATTGTG</pcr_primer_p1>
		<pcr_primer_p2>ACTCGAAAGCTCTGATTTTATTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CGTGATATTAGTTTAATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGT</canonical_amplicon>
		<polymorphic_amplicon>CGTGATATTAGTTTAATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATRGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32477</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>4722</contig_pos>
        <strand>+</strand>
        <context>ATTTTGTTTT[A/G]AGRATTAARG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTT</left_flank>
        <right_flank>AGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTT</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATGTTTTATTTTTGAATTTAATTTTTATTTAAGAAAAAATAAATATACTTATACAAAGATAAGTCTTCGGAAATTCTGTTATTATAAAATTTAAAGATTTTATAATAAATTTTCTAGGGCAGAATATTATATAATAGTATTTTACTATATTTAATTTAAAGAATTACTCCGGAGTTAACAGAAAATCATACCTAATCTAGTTCTTATAGTAAGGTAAGTTTTACATCGATGTTGTATTCAGATAATCTAAGAAAGGAGAAGGCTTAGTAGTTTAGACTGTTCTTCTATTAAATAATCTGACGTGATATTAGTTTAATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACA</canonical>
            <polymorphic>TTATGTTTTATTTTTGAATTTAATTTTTATTTAAGAAAAAATAAATATACTTATACAAAGATAAGTCTTCGGAAATTCTGTTATTATAAAATTTAAAGATTTTATAATAAATTTTCTAGGGCAGAATATTATATAATAGTATTTTACTATATTTAATTTAAAGAATTACTCCGGAGTTAACAGAAAATCATACCTAATCTAGTTCTTATAGTAAGGTAAGTTTTACATCGATGTTGTATTCAGATAATCTAAGAAAGGAGAAGGCTTAGTAGTTTAGACTGTTCTTCTATTAAATAATCTGACGTGATATTAGTTTAATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTRAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCATTGTGAGATAGAATTGTTTA</pcr_primer_p1>
		<pcr_primer_p2>CAACACTAACAAAACCACACTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTG</canonical_amplicon>
		<polymorphic_amplicon>AATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTRAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32478</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>4725</contig_pos>
        <strand>+</strand>
        <context>TTGTTTTRAG[A/G]ATTAARGATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAG</left_flank>
        <right_flank>ATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTTATTTTTGAATTTAATTTTTATTTAAGAAAAAATAAATATACTTATACAAAGATAAGTCTTCGGAAATTCTGTTATTATAAAATTTAAAGATTTTATAATAAATTTTCTAGGGCAGAATATTATATAATAGTATTTTACTATATTTAATTTAAAGAATTACTCCGGAGTTAACAGAAAATCATACCTAATCTAGTTCTTATAGTAAGGTAAGTTTTACATCGATGTTGTATTCAGATAATCTAAGAAAGGAGAAGGCTTAGTAGTTTAGACTGTTCTTCTATTAAATAATCTGACGTGATATTAGTTTAATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAAT</canonical>
            <polymorphic>TGTTTTATTTTTGAATTTAATTTTTATTTAAGAAAAAATAAATATACTTATACAAAGATAAGTCTTCGGAAATTCTGTTATTATAAAATTTAAAGATTTTATAATAAATTTTCTAGGGCAGAATATTATATAATAGTATTTTACTATATTTAATTTAAAGAATTACTCCGGAGTTAACAGAAAATCATACCTAATCTAGTTCTTATAGTAAGGTAAGTTTTACATCGATGTTGTATTCAGATAATCTAAGAAAGGAGAAGGCTTAGTAGTTTAGACTGTTCTTCTATTAAATAATCTGACGTGATATTAGTTTAATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGRATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCATTGTGAGATAGAATTGTTTA</pcr_primer_p1>
		<pcr_primer_p2>CAACACTAACAAAACCACACTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTG</canonical_amplicon>
		<polymorphic_amplicon>AATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGRATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32479</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>4731</contig_pos>
        <strand>+</strand>
        <context>TRAGRATTAA[A/G]GATATAGGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAA</left_flank>
        <right_flank>GATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTGAATTTAATTTTTATTTAAGAAAAAATAAATATACTTATACAAAGATAAGTCTTCGGAAATTCTGTTATTATAAAATTTAAAGATTTTATAATAAATTTTCTAGGGCAGAATATTATATAATAGTATTTTACTATATTTAATTTAAAGAATTACTCCGGAGTTAACAGAAAATCATACCTAATCTAGTTCTTATAGTAAGGTAAGTTTTACATCGATGTTGTATTCAGATAATCTAAGAAAGGAGAAGGCTTAGTAGTTTAGACTGTTCTTCTATTAAATAATCTGACGTGATATTAGTTTAATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTT</canonical>
            <polymorphic>ATTTTTGAATTTAATTTTTATTTAAGAAAAAATAAATATACTTATACAAAGATAAGTCTTCGGAAATTCTGTTATTATAAAATTTAAAGATTTTATAATAAATTTTCTAGGGCAGAATATTATATAATAGTATTTTACTATATTTAATTTAAAGAATTACTCCGGAGTTAACAGAAAATCATACCTAATCTAGTTCTTATAGTAAGGTAAGTTTTACATCGATGTTGTATTCAGATAATCTAAGAAAGGAGAAGGCTTAGTAGTTTAGACTGTTCTTCTATTAAATAATCTGACGTGATATTAGTTTAATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAARGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAATTCATTGTGAGATAGAATTGTT</pcr_primer_p1>
		<pcr_primer_p2>CCAACACTAACAAAACCACAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTAATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGG</canonical_amplicon>
		<polymorphic_amplicon>TTAATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAARGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32480</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>4786</contig_pos>
        <strand>+</strand>
        <context>TAGTGTTGGG[A/G]AAATTCAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGG</left_flank>
        <right_flank>AAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTT</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTTCGGAAATTCTGTTATTATAAAATTTAAAGATTTTATAATAAATTTTCTAGGGCAGAATATTATATAATAGTATTTTACTATATTTAATTTAAAGAATTACTCCGGAGTTAACAGAAAATCATACCTAATCTAGTTCTTATAGTAAGGTAAGTTTTACATCGATGTTGTATTCAGATAATCTAAGAAAGGAGAAGGCTTAGTAGTTTAGACTGTTCTTCTATTAAATAATCTGACGTGATATTAGTTTAATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATG</canonical>
            <polymorphic>GTCTTCGGAAATTCTGTTATTATAAAATTTAAAGATTTTATAATAAATTTTCTAGGGCAGAATATTATATAATAGTATTTTACTATATTTAATTTAAAGAATTACTCCGGAGTTAACAGAAAATCATACCTAATCTAGTTCTTATAGTAAGGTAAGTTTTACATCGATGTTGTATTCAGATAATCTAAGAAAGGAGAAGGCTTAGTAGTTTAGACTGTTCTTCTATTAAATAATCTGACGTGATATTAGTTTAATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGRAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGCTTTTTATGTTATTAATTTTG</pcr_primer_p1>
		<pcr_primer_p2>CTCCATATAAAAACCACCTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAG</canonical_amplicon>
		<polymorphic_amplicon>TGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGRAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32481</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>4869</contig_pos>
        <strand></strand>
        <context>TAATATTCTT[G/A]GGGATTTTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTT</left_flank>
        <right_flank>GGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATATTTAATTTAAAGAATTACTCCGGAGTTAACAGAAAATCATACCTAATCTAGTTCTTATAGTAAGGTAAGTTTTACATCGATGTTGTATTCAGATAATCTAAGAAAGGAGAAGGCTTAGTAGTTTAGACTGTTCTTCTATTAAATAATCTGACGTGATATTAGTTTAATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCT</canonical>
            <polymorphic>TATATTTAATTTAAAGAATTACTCCGGAGTTAACAGAAAATCATACCTAATCTAGTTCTTATAGTAAGGTAAGTTTTACATCGATGTTGTATTCAGATAATCTAAGAAAGGAGAAGGCTTAGTAGTTTAGACTGTTCTTCTATTAAATAATCTGACGTGATATTAGTTTAATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTRGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGGGAAAAATAAAATCAGAGC</pcr_primer_p1>
		<pcr_primer_p2>CTCACACAAGTTTTCCATATCAT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAG</canonical_amplicon>
		<polymorphic_amplicon>ATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTRGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32482</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5023</contig_pos>
        <strand>+</strand>
        <context>atatttttaG[A/G]TGGTGTTAGK</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAG</left_flank>
        <right_flank>TGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGTGATATTAGTTTAATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAA</canonical>
            <polymorphic>ACGTGATATTAGTTTAATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGRTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>217 171 165 156 133 48 21 19 16 15 12 6 5 4 3 3 2 2 2</canonical_bands>
                <polymorphic_bands>217 171 165 156 133 51 21 19 16 15 12 6 5 4 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGTGGTTTTTATATGGAGTGAT</pcr_primer_p1>
		<pcr_primer_p2>GAAAAACCATAGTAAATAGACCAATA</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>AGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTC</canonical_amplicon>
		<polymorphic_amplicon>AGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGRTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32483</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5033</contig_pos>
        <strand>+</strand>
        <context>RTGGTGTTAG[G/T]TCTTTAGTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAG</left_flank>
        <right_flank>TCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTTAATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTA</canonical>
            <polymorphic>AGTTTAATTCATTGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGKTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGTGGTTTTTATATGGAGTGAT</pcr_primer_p1>
		<pcr_primer_p2>GAAAAACCATAGTAAATAGACCAATA</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>AGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTC</canonical_amplicon>
		<polymorphic_amplicon>AGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGKTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32484</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5045</contig_pos>
        <strand>+</strand>
        <context>CTTTAGTACA[A/G]AGAAGAACAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACA</left_flank>
        <right_flank>AGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTT</canonical>
            <polymorphic>TGTGAGATAGAATTGTTTATCTTGATAAGTATTTATATTTAATACATTTAGTACGAAAGGAACATTGTAAAAGTTTTAAACTTTTAAGATTTTTAAATCTTAATATTGGTTTTAATTATGGTATTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACARAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGTGGTTTTTATATGGAGTGAT</pcr_primer_p1>
		<pcr_primer_p2>GAAAAACCATAGTAAATAGACCAATA</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>AGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTC</canonical_amplicon>
		<polymorphic_amplicon>AGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACARAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32485</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5168</contig_pos>
        <strand>+</strand>
        <context>TCTAGACTAG[C/T]AAAACTGGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAG</left_flank>
        <right_flank>AAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATA</canonical>
            <polymorphic>TTATTGTTTACTTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGYAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACTAGT</site>
                <isoschizomers>
                    <enzyme>AhlI</enzyme>
                    <enzyme>BcuI</enzyme>
                    <enzyme>SpeI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGGAAAACTTGTGTGAGTGAT</pcr_primer_p1>
		<pcr_primer_p2>CAATAAAACCAAAGTAACTATTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>TATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTG</canonical_amplicon>
		<polymorphic_amplicon>TATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGYAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32486</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5179</contig_pos>
        <strand>+</strand>
        <context>AAAACTGGTA[A/G]AAGAAGATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTA</left_flank>
        <right_flank>AAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGT</canonical>
            <polymorphic>TTTGGTTTTATTGCTGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTARAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGTTTGTACTAATTATTGGTCTAT</pcr_primer_p1>
		<pcr_primer_p2>CAAACTCTAACACCACCTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTG</canonical_amplicon>
		<polymorphic_amplicon>CAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTARAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32487</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5193</contig_pos>
        <strand>+</strand>
        <context>AAGATTTGAA[G/T]AAGGTGGTAR</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAA</left_flank>
        <right_flank>AAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTAT</canonical>
            <polymorphic>TGGCTTTTTATGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAAKAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGTTTGTACTAATTATTGGTCTAT</pcr_primer_p1>
		<pcr_primer_p2>CAAACTCTAACACCACCTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTG</canonical_amplicon>
		<polymorphic_amplicon>CAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAAKAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32488</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5203</contig_pos>
        <strand>+</strand>
        <context>KAAGGTGGTA[A/G]CCTTGAGGWC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTA</left_flank>
        <right_flank>CCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCT</canonical>
            <polymorphic>TGTTATTAATTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTARCCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGTNACC</site>
                <isoschizomers>
                    <enzyme>BstEII</enzyme>
                    <enzyme>BstPI</enzyme>
                    <enzyme>Eco91I</enzyme>
                    <enzyme>EcoO65I</enzyme>
                    <enzyme>PspEI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>354 237 228 142 28 11</canonical_bands>
                <polymorphic_bands>354 237 228 153 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGGTTTGTACTAATTATTGGTCTAT</pcr_primer_p1>
		<pcr_primer_p2>CAAACTCTAACACCACCTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTG</canonical_amplicon>
		<polymorphic_amplicon>CAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTARCCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32489</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5212</contig_pos>
        <strand>+</strand>
        <context>ARCCTTGAGG[A/T]CACTGYCACK</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGG</left_flank>
        <right_flank>CACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAAT</canonical>
            <polymorphic>TTTTGTTTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGWCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>345 237 237 142 28 11</canonical_bands>
                <polymorphic_bands>345 237 237 142 39</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGGTTTGTACTAATTATTGGTCTAT</pcr_primer_p1>
		<pcr_primer_p2>CAAACTCTAACACCACCTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTG</canonical_amplicon>
		<polymorphic_amplicon>CAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGWCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32490</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5218</contig_pos>
        <strand>+</strand>
        <context>GAGGWCACTG[C/T]CACKAAYAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTG</left_flank>
        <right_flank>CACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTA</canonical>
            <polymorphic>TTTGAGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGYCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGGTTTGTACTAATTATTGGTCTAT</pcr_primer_p1>
		<pcr_primer_p2>CAAACTCTAACACCACCTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTG</canonical_amplicon>
		<polymorphic_amplicon>CAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGYCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32491</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5222</contig_pos>
        <strand>+</strand>
        <context>WCACTGYCAC[G/T]AAYAGGGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCAC</left_flank>
        <right_flank>AATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTG</canonical>
            <polymorphic>AGGATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACKAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGTTTGTACTAATTATTGGTCTAT</pcr_primer_p1>
		<pcr_primer_p2>CAAACTCTAACACCACCTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTG</canonical_amplicon>
		<polymorphic_amplicon>CAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACKAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32492</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5225</contig_pos>
        <strand>+</strand>
        <context>CTGYCACKAA[C/T]AGGGTTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAA</left_flank>
        <right_flank>AGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATT</canonical>
            <polymorphic>ATTAAGGATATAGGGAAAAATAAAATCAGAGCTTTCGAGTGTGGTTTTGTTAGTGTTGGGGAAATTCAAAATTCTTTTAGAATTCATTTTTTTATTATAATACTTATATTTGTAATTTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAAYAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGTTTGTACTAATTATTGGTCTAT</pcr_primer_p1>
		<pcr_primer_p2>CAAACTCTAACACCACCTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTG</canonical_amplicon>
		<polymorphic_amplicon>CAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAAYAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32493</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5341</contig_pos>
        <strand>+</strand>
        <context>TGGATTTGTA[A/G]TTTTTTTAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTA</left_flank>
        <right_flank>TTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGA</canonical>
            <polymorphic>TTTTGATTTGGAAATTGTAATATTCTTGGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTARTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTGCTGGCTTTTTATGTTAG</pcr_primer_p1>
		<pcr_primer_p2>TAAAACCCTAAATGTAACCAAGA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTA</canonical_amplicon>
		<polymorphic_amplicon>TTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTARTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32494</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5368</contig_pos>
        <strand>+</strand>
        <context>TAGAGTTTGG[C/T]TRTTACCYRC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGG</left_flank>
        <right_flank>TATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTG</canonical>
            <polymorphic>GGGGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGYTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>322 196 196 126 107 23 15 12 3</canonical_bands>
                <polymorphic_bands>429 196 196 126 23 15 12 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATTGCTGGCTTTTTATGTTAG</pcr_primer_p1>
		<pcr_primer_p2>TAAAACCCTAAATGTAACCAAGA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTA</canonical_amplicon>
		<polymorphic_amplicon>TTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGYTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32495</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5370</contig_pos>
        <strand>+</strand>
        <context>GAGTTTGGYT[A/G]TTACCYRCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCT</left_flank>
        <right_flank>TTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCC</canonical>
            <polymorphic>GGATTTTAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTRTTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTGCTGGCTTTTTATGTTAG</pcr_primer_p1>
		<pcr_primer_p2>TAAAACCCTAAATGTAACCAAGA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTA</canonical_amplicon>
		<polymorphic_amplicon>TTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTRTTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32496</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5376</contig_pos>
        <strand></strand>
        <context>GGYTRTTACC[T/C]RCTTTTAAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACC</left_flank>
        <right_flank>ACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGC</canonical>
            <polymorphic>TAGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCYACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTGCTGGCTTTTTATGTTAG</pcr_primer_p1>
		<pcr_primer_p2>TAAAACCCTAAATGTAACCAAGA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTA</canonical_amplicon>
		<polymorphic_amplicon>TTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCYACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32497</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5377</contig_pos>
        <strand></strand>
        <context>GYTRTTACCY[A/G]CTTTTAAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCT</left_flank>
        <right_flank>CTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAA</right_flank>
        <qual_score>50</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCA</canonical>
            <polymorphic>AGTTTCTGATTTAAGTTCTTATGTCAGATTTTTGTTAATAATTTTTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTRCTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTGCTGGCTTTTTATGTTAG</pcr_primer_p1>
		<pcr_primer_p2>TAAAACCCTAAATGTAACCAAGA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTA</canonical_amplicon>
		<polymorphic_amplicon>TTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTRCTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32498</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5421</contig_pos>
        <strand></strand>
        <context>ATTTTTTAAG[G/A]ttaaaattta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAG</left_flank>
        <right_flank>TTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAAC</canonical>
            <polymorphic>TTTTTATTCTAGGTGGTTTTTATATGGAGTGATGATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGRTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTGCTGGCTTTTTATGTTAG</pcr_primer_p1>
		<pcr_primer_p2>TAAAACCCTAAATGTAACCAAGA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTA</canonical_amplicon>
		<polymorphic_amplicon>TTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGRTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32499</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5454</contig_pos>
        <strand></strand>
        <context>ataGAGTTCT[C/T]TTTTCTTTTY</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCT</left_flank>
        <right_flank>TTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAAC</right_flank>
        <qual_score>50</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAA</canonical>
            <polymorphic>GATATGGAAAACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTYTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTAGGTGGTGTTAGAGTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAATCCCATCTTAAAAGCATAGT</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>TTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTYTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32500</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5464</contig_pos>
        <strand>+</strand>
        <context>YTTTTCTTTT[C/T]TTCTATTCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTT</left_flank>
        <right_flank>TTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAAT</canonical>
            <polymorphic>ACTTGTGTGAGTGATCTAAAATTAATACTTTTATTTTTATTACTTTATATATTTTTAGGTGGTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTYTTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTAGGTGGTGTTAGAGTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAATCCCATCTTAAAAGCATAGT</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>TTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTYTTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32501</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5538</contig_pos>
        <strand>+</strand>
        <context>ACTTTAATTA[C/T]TATTRTTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTA</left_flank>
        <right_flank>TATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTT</right_flank>
        <qual_score>145</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGC</canonical>
            <polymorphic>AGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTAYTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTGGTTACATTTAGGGTTTTA</pcr_primer_p1>
		<pcr_primer_p2>CCTAGACGATTAGTTAAAGCTGTATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGG</canonical_amplicon>
		<polymorphic_amplicon>TCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTAYTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32502</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5543</contig_pos>
        <strand>+</strand>
        <context>AATTAYTATT[A/G]TTTTGTATTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATT</left_flank>
        <right_flank>TTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTA</right_flank>
        <qual_score>145</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGAT</canonical>
            <polymorphic>ATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTRTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTGGTTACATTTAGGGTTTTA</pcr_primer_p1>
		<pcr_primer_p2>CCTAGACGATTAGTTAAAGCTGTATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGG</canonical_amplicon>
		<polymorphic_amplicon>TCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTRTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32503</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5556</contig_pos>
        <strand>+</strand>
        <context>TTGTATTACT[C/T]ATTTTTGTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACT</left_flank>
        <right_flank>ATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTAC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGA</canonical>
            <polymorphic>GGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAATTTTACAAAAAATTTTATCAGGTTTGTACTAATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTYATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTGGTTACATTTAGGGTTTTA</pcr_primer_p1>
		<pcr_primer_p2>CCTAGACGATTAGTTAAAGCTGTATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGG</canonical_amplicon>
		<polymorphic_amplicon>TCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTYATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32504</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5631</contig_pos>
        <strand>+</strand>
        <context>GGGATTTACT[C/T]GGTATTTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACT</left_flank>
        <right_flank>GGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTG</right_flank>
        <qual_score>148</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAG</canonical>
            <polymorphic>ATTATTGGTCTATTTACTATGGTTTTTCTAGACTAGTAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTYGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTGGTTACATTTAGGGTTTTA</pcr_primer_p1>
		<pcr_primer_p2>CCTAGACGATTAGTTAAAGCTGTATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGG</canonical_amplicon>
		<polymorphic_amplicon>TCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTYGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32505</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5667</contig_pos>
        <strand>+</strand>
        <context>TGTTTTATAA[C/T]AATTGRGATA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAA</left_flank>
        <right_flank>AATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACT</canonical>
            <polymorphic>TAAAACTGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAAYAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGCTTTTAAGATGGGATTTACT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGAAATTGAGCTCTTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAAYAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32506</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5673</contig_pos>
        <strand>+</strand>
        <context>ATAAYAATTG[A/G]GATAGTTGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTG</left_flank>
        <right_flank>GATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAA</canonical>
            <polymorphic>TGGTAAAAGAAGATTTGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGRGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGCTTTTAAGATGGGATTTACT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGAAATTGAGCTCTTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGRGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32507</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5688</contig_pos>
        <strand>+</strand>
        <context>GTTGTAGTGG[C/T]GCYATAAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGG</left_flank>
        <right_flank>GCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTAT</canonical>
            <polymorphic>TGAATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGYGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>501 151 141 105 90 12</canonical_bands>
                <polymorphic_bands>513 151 141 105 90</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>322 126 107 105 72 67 62 53 36 23 15 12</canonical_bands>
                <polymorphic_bands>334 126 107 105 72 67 62 53 36 23 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGCTTTTAAGATGGGATTTACT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGAAATTGAGCTCTTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGYGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32508</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5691</contig_pos>
        <strand>+</strand>
        <context>GTAGTGGYGC[C/T]ATAAATACAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGC</left_flank>
        <right_flank>ATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACA</canonical>
            <polymorphic>ATAAGGTGGTAACCTTGAGGTCACTGCCACAAATAGGGTTTTCAATAGTTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCYATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>498 154 141 105 90 12</canonical_bands>
                <polymorphic_bands>510 154 141 105 90</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>322 126 107 105 69 67 65 53 36 23 15 12</canonical_bands>
                <polymorphic_bands>334 126 107 105 69 67 65 53 36 23 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGCTTTTAAGATGGGATTTACT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGAAATTGAGCTCTTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCYATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32509</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5739</contig_pos>
        <strand></strand>
        <context>TCATATTTGT[C/T]TTTTTTGGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGT</left_flank>
        <right_flank>TTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAAT</right_flank>
        <qual_score>50</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAA</canonical>
            <polymorphic>TTACTTTGGTTTTATTGCTGGCTTTTTATGTTAGATTTTTGTTAATGTTTTATATGGATTGATTTAAAATTAATATTTCTATTTTTTTGATTGGATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTYTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGCTTTTAAGATGGGATTTACT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGAAATTGAGCTCTTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTYTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32510</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5832</contig_pos>
        <strand>+</strand>
        <context>TAACAGCCTT[C/T]ACTAAAAGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTT</left_flank>
        <right_flank>ACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAG</right_flank>
        <qual_score>145</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGC</canonical>
            <polymorphic>GATTTGTATTTTTTTTAGGTGGTGTTAGAGTTTGGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTYACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>192 165 165 111 101 59 51 36 30 21 21 16 14 8 6 3 1</canonical_bands>
                <polymorphic_bands>192 165 165 162 101 59 36 30 21 21 16 14 8 6 3 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACAGCTTTAACTAATCGTCTAGG</pcr_primer_p1>
		<pcr_primer_p2>GCTGTAACCAATGTTCTTCTATG</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>TACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGC</canonical_amplicon>
		<polymorphic_amplicon>TACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTYACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32511</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5865</contig_pos>
        <strand>+</strand>
        <context>TTAGTTCTTG[A/G]CTGCCAAAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTG</left_flank>
        <right_flank>CTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAG</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTT</canonical>
            <polymorphic>GGCTATTACCTACTTTTAAGTTAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGRCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>322 239 126 105 67 53 36 23 15 12 2</canonical_bands>
                <polymorphic_bands>322 239 126 105 90 53 36 15 12 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACAGCTTTAACTAATCGTCTAGG</pcr_primer_p1>
		<pcr_primer_p2>GCTGTAACCAATGTTCTTCTATG</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>TACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGC</canonical_amplicon>
		<polymorphic_amplicon>TACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGRCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32512</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5886</contig_pos>
        <strand>+</strand>
        <context>CAATAAGTGC[C/T]CCTACACCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGC</left_flank>
        <right_flank>CCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTT</canonical>
            <polymorphic>TAGGAATTTATTTATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCYCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>500 458 42</canonical_bands>
                <polymorphic_bands>542 458</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTTTAGGGGTTATTATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAAATCTTCTTCTACCAATCTAGC</pcr_primer_p2>
		<pcr_amplicon_size>308</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCYCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32513</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5898</contig_pos>
        <strand>+</strand>
        <context>CTACACCTGT[C/T]AGGTCTTTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGT</left_flank>
        <right_flank>AGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATT</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTTTTTTAGATTGAT</canonical>
            <polymorphic>TATTAGAATGGGATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTYAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTTTTTTAGATTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAGCTCAATTTCCTTTTAG</pcr_primer_p1>
		<pcr_primer_p2>CCTTCTTCAAATCTTCTTCTACC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGG</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTYAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32514</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5910</contig_pos>
        <strand>+</strand>
        <context>GGTCTTTAGT[A/G]CATAGAAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGT</left_flank>
        <right_flank>CATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTTTTTTAGATTGATATTTTTTGTTTC</canonical>
            <polymorphic>ATTTTTTAAGGTTAAAATTTAATTTTTATTTTAATAGAGTTCTCTTTTCTTTTATTCTATTCTTGGTTACATTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTRCATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTTTTTTAGATTGATATTTTTTGTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 414 87</canonical_bands>
                <polymorphic_bands>586 414</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>497 416 87</canonical_bands>
                <polymorphic_bands>584 416</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAGCTCAATTTCCTTTTAG</pcr_primer_p1>
		<pcr_primer_p2>CCTTCTTCAAATCTTCTTCTACC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGG</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTRCATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32515</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>5981</contig_pos>
        <strand></strand>
        <context>ttacaaaaaa[A/G]ttttattaGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAA</left_flank>
        <right_flank>TTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTTTTTTAGATTGATATTTTTTGTTTCAGTATTTTTAACTTTTGGATATAGTTTTCGTCTTTGAAAGAGATTTTTTTTAAGATTTAATAAAGTTATAA</canonical>
            <polymorphic>TTTAGGGTTTTAATTTTCAGAACTTATTATCTTAATAGTGAATTAAACTTTAATTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAARTTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTTTTTTAGATTGATATTTTTTGTTTCAGTATTTTTAACTTTTGGATATAGTTTTCGTCTTTGAAAGAGATTTTTTTTAAGATTTAATAAAGTTATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>355 276 226 102 27 14</canonical_bands>
                <polymorphic_bands>355 303 226 102 14</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>258 178 109 94 81 70 51 29 18 18 17 14 13 11 11 10 9 9</canonical_bands>
                <polymorphic_bands>276 178 109 94 81 70 51 29 18 17 14 13 11 11 10 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATAGAAGAACATTGGTTACAGC</pcr_primer_p1>
		<pcr_primer_p2>CCTAACAAGGTGAATAAAAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGG</canonical_amplicon>
		<polymorphic_amplicon>CATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAARTTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32516</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>6034</contig_pos>
        <strand>+</strand>
        <context>TTTTTCTAGA[C/T]TAGCTAGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGA</left_flank>
        <right_flank>TAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACA</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTTTTTTAGATTGATATTTTTTGTTTCAGTATTTTTAACTTTTGGATATAGTTTTCGTCTTTGAAAGAGATTTTTTTTAAGATTTAATAAAGTTATAAATCACTACAGGAGTACAGTTTTTATAAATTTTCTTAGTTTAGCTTTAGTTATT</canonical>
            <polymorphic>TTACTATTGTTTTGTATTACTTATTTTTGTAGGTAGGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGAYTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTTTTTTAGATTGATATTTTTTGTTTCAGTATTTTTAACTTTTGGATATAGTTTTCGTCTTTGAAAGAGATTTTTTTTAAGATTTAATAAAGTTATAAATCACTACAGGAGTACAGTTTTTATAAATTTTCTTAGTTTAGCTTTAGTTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATAGAAGAACATTGGTTACAGC</pcr_primer_p1>
		<pcr_primer_p2>CCTAACAAGGTGAATAAAAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGG</canonical_amplicon>
		<polymorphic_amplicon>CATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGAYTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32517</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>6069</contig_pos>
        <strand>+</strand>
        <context>TGAAGAAGGT[A/G]GTAGCCTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGT</left_flank>
        <right_flank>GTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGG</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTTTTTTAGATTGATATTTTTTGTTTCAGTATTTTTAACTTTTGGATATAGTTTTCGTCTTTGAAAGAGATTTTTTTTAAGATTTAATAAAGTTATAAATCACTACAGGAGTACAGTTTTTATAAATTTTCTTAGTTTAGCTTTAGTTATTTTTTCTATTGGATTTTTATGATGATTAAATTTTAA</canonical>
            <polymorphic>GGATGTTTAGTTTAAATTTTAGTAATAGAATTTTTACTATGCTTTTAAGATGGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTRGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTTTTTTAGATTGATATTTTTTGTTTCAGTATTTTTAACTTTTGGATATAGTTTTCGTCTTTGAAAGAGATTTTTTTTAAGATTTAATAAAGTTATAAATCACTACAGGAGTACAGTTTTTATAAATTTTCTTAGTTTAGCTTTAGTTATTTTTTCTATTGGATTTTTATGATGATTAAATTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATAGAAGAACATTGGTTACAGC</pcr_primer_p1>
		<pcr_primer_p2>CCTAACAAGGTGAATAAAAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGG</canonical_amplicon>
		<polymorphic_amplicon>CATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTRGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32518</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>6120</contig_pos>
        <strand>+</strand>
        <context>TTACTTTGGG[C/T]CTRGGGCTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGG</left_flank>
        <right_flank>CTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTTTTTTAGATTGATATTTTTTGTTTCAGTATTTTTAACTTTTGGATATAGTTTTCGTCTTTGAAAGAGATTTTTTTTAAGATTTAATAAAGTTATAAATCACTACAGGAGTACAGTTTTTATAAATTTTCTTAGTTTAGCTTTAGTTATTTTTTCTATTGGATTTTTATGATGATTAAATTTTAATTTACTTAATGTACCTAGATTATTTCTTTATGTTGATTTTTTTGGTCCTTT</canonical>
            <polymorphic>GGGATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGYCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTTTTTTAGATTGATATTTTTTGTTTCAGTATTTTTAACTTTTGGATATAGTTTTCGTCTTTGAAAGAGATTTTTTTTAAGATTTAATAAAGTTATAAATCACTACAGGAGTACAGTTTTTATAAATTTTCTTAGTTTAGCTTTAGTTATTTTTTCTATTGGATTTTTATGATGATTAAATTTTAATTTACTTAATGTACCTAGATTATTTCTTTATGTTGATTTTTTTGGTCCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTAGAAGAAGATTTGAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TGTAATTGAATAAAATTGGGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACA</canonical_amplicon>
		<polymorphic_amplicon>TTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGYCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32519</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>6123</contig_pos>
        <strand>+</strand>
        <context>CTTTGGGYCT[A/G]GGGCTGAGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCT</left_flank>
        <right_flank>GGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAA</right_flank>
        <qual_score>146</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTTTTTTAGATTGATATTTTTTGTTTCAGTATTTTTAACTTTTGGATATAGTTTTCGTCTTTGAAAGAGATTTTTTTTAAGATTTAATAAAGTTATAAATCACTACAGGAGTACAGTTTTTATAAATTTTCTTAGTTTAGCTTTAGTTATTTTTTCTATTGGATTTTTATGATGATTAAATTTTAATTTACTTAATGTACCTAGATTATTTCTTTATGTTGATTTTTTTGGTCCTTTAGT</canonical>
            <polymorphic>ATTTACTTGGTATTTCCAGTTTTTTCTTAGTCTTGTTTTATAATAATTGGGATAGTTGTAGTGGAGCTATAAATACAGCTTTAACTAATCGTCTAGGTGATTATTTCATATTTGTCTTTTTTGGTTTATCAGTTTTTAGGGGTTATTATTTTTTAAGTTTTAGAATGTTTAGAAGATACATGTCTTTATTATTATTGTTAACAGCCTTCACTAAAAGAGCTCAATTTCCTTTTAGTTCTTGGCTGCCAAAGGCAATAAGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTRGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTTTTTTAGATTGATATTTTTTGTTTCAGTATTTTTAACTTTTGGATATAGTTTTCGTCTTTGAAAGAGATTTTTTTTAAGATTTAATAAAGTTATAAATCACTACAGGAGTACAGTTTTTATAAATTTTCTTAGTTTAGCTTTAGTTATTTTTTCTATTGGATTTTTATGATGATTAAATTTTAATTTACTTAATGTACCTAGATTATTTCTTTATGTTGATTTTTTTGGTCCTTTAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>463 313 93 83 39 9</canonical_bands>
                <polymorphic_bands>546 313 93 39 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGTAGAAGAAGATTTGAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TGTAATTGAATAAAATTGGGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACA</canonical_amplicon>
		<polymorphic_amplicon>TTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTRGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32520</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>6380</contig_pos>
        <strand>+</strand>
        <context>aataattata[A/T]GTTGTTYTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATA</left_flank>
        <right_flank>GTTGTTTTTTAGATTGATATTTTTTGTTTCAGTATTTTTAACTTTTGGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTTTTTTAGATTGATATTTTTTGTTTCAGTATTTTTAACTTTTGGATATAGTTTTCGTCTTTGAAAGAGATTTTTTTTAAGATTTAATAAAGTTATAAATCACTACAGGAGTACAGTTTTTATAAATTTTCTTAGTTTAGCTTTAGTTATTTTTTCTATTGGATTTTTATGATGATTAAATTTTAATTTACTTAATGTACCTAGATTATTTCTTTATGTTGATTTTTTTGGTCCTTTAGTTTTTTTATTTATAATAATCTTTTTATCATTTATAGTATTAAAAATGTTATTTAAAGAATTAACTTATAAGTTTTTAGTAGATTATTTAGCTAAAAATAGGATCTATAAAATAAAAAATTTAAAATTTATAGATTTGTTCTTAAATAATATCAATTCTAAGGGGTATACCTTATTTTTAAGAGTTGGAATTTTTAAAAATTACTATATAAAAAGGTTAAATTTCAGCAGTGTTGTAATTTTAATTTTTATTTTTTTTA</canonical>
            <polymorphic>AGTGCCCCTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATAWGTTGTTTTTTAGATTGATATTTTTTGTTTCAGTATTTTTAACTTTTGGATATAGTTTTCGTCTTTGAAAGAGATTTTTTTTAAGATTTAATAAAGTTATAAATCACTACAGGAGTACAGTTTTTATAAATTTTCTTAGTTTAGCTTTAGTTATTTTTTCTATTGGATTTTTATGATGATTAAATTTTAATTTACTTAATGTACCTAGATTATTTCTTTATGTTGATTTTTTTGGTCCTTTAGTTTTTTTATTTATAATAATCTTTTTATCATTTATAGTATTAAAAATGTTATTTAAAGAATTAACTTATAAGTTTTTAGTAGATTATTTAGCTAAAAATAGGATCTATAAAATAAAAAATTTAAAATTTATAGATTTGTTCTTAAATAATATCAATTCTAAGGGGTATACCTTATTTTTAAGAGTTGGAATTTTTAAAAATTACTATATAAAAAGGTTAAATTTCAGCAGTGTTGTAATTTTAATTTTTATTTTTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAATTTACCCAATTTTATTCA</pcr_primer_p1>
		<pcr_primer_p2>AAAAACTGTACTCCTGTAGTGATTTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTTTTTTAGATTGATATTTTTTGTTTCAGTATTTTTAACTTTTGGATATAGTTTTCGTCTTTGAAAGAGATTTTTTTTAAGATTTAATAAAGTTATAAATCACTACAGGAGTACAGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATAWGTTGTTTTTTAGATTGATATTTTTTGTTTCAGTATTTTTAACTTTTGGATATAGTTTTCGTCTTTGAAAGAGATTTTTTTTAAGATTTAATAAAGTTATAAATCACTACAGGAGTACAGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32521</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>6387</contig_pos>
        <strand></strand>
        <context>atawGTTGTT[T/C]TTTAGATTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTT</left_flank>
        <right_flank>TTTAGATTGATATTTTTTGTTTCAGTATTTTTAACTTTTGGATATAGTTT</right_flank>
        <qual_score>47</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTTTTTTAGATTGATATTTTTTGTTTCAGTATTTTTAACTTTTGGATATAGTTTTCGTCTTTGAAAGAGATTTTTTTTAAGATTTAATAAAGTTATAAATCACTACAGGAGTACAGTTTTTATAAATTTTCTTAGTTTAGCTTTAGTTATTTTTTCTATTGGATTTTTATGATGATTAAATTTTAATTTACTTAATGTACCTAGATTATTTCTTTATGTTGATTTTTTTGGTCCTTTAGTTTTTTTATTTATAATAATCTTTTTATCATTTATAGTATTAAAAATGTTATTTAAAGAATTAACTTATAAGTTTTTAGTAGATTATTTAGCTAAAAATAGGATCTATAAAATAAAAAATTTAAAATTTATAGATTTGTTCTTAAATAATATCAATTCTAAGGGGTATACCTTATTTTTAAGAGTTGGAATTTTTAAAAATTACTATATAAAAAGGTTAAATTTCAGCAGTGTTGTAATTTTAATTTTTATTTTTTTTATAATTTG</canonical>
            <polymorphic>CTACACCTGTTAGGTCTTTAGTACATAGAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTTYTTTAGATTGATATTTTTTGTTTCAGTATTTTTAACTTTTGGATATAGTTTTCGTCTTTGAAAGAGATTTTTTTTAAGATTTAATAAAGTTATAAATCACTACAGGAGTACAGTTTTTATAAATTTTCTTAGTTTAGCTTTAGTTATTTTTTCTATTGGATTTTTATGATGATTAAATTTTAATTTACTTAATGTACCTAGATTATTTCTTTATGTTGATTTTTTTGGTCCTTTAGTTTTTTTATTTATAATAATCTTTTTATCATTTATAGTATTAAAAATGTTATTTAAAGAATTAACTTATAAGTTTTTAGTAGATTATTTAGCTAAAAATAGGATCTATAAAATAAAAAATTTAAAATTTATAGATTTGTTCTTAAATAATATCAATTCTAAGGGGTATACCTTATTTTTAAGAGTTGGAATTTTTAAAAATTACTATATAAAAAGGTTAAATTTCAGCAGTGTTGTAATTTTAATTTTTATTTTTTTTATAATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAATTTACCCAATTTTATTCA</pcr_primer_p1>
		<pcr_primer_p2>AAAAACTGTACTCCTGTAGTGATTTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTTTTTTAGATTGATATTTTTTGTTTCAGTATTTTTAACTTTTGGATATAGTTTTCGTCTTTGAAAGAGATTTTTTTTAAGATTTAATAAAGTTATAAATCACTACAGGAGTACAGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTTYTTTAGATTGATATTTTTTGTTTCAGTATTTTTAACTTTTGGATATAGTTTTCGTCTTTGAAAGAGATTTTTTTTAAGATTTAATAAAGTTATAAATCACTACAGGAGTACAGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32522</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>6414</contig_pos>
        <strand></strand>
        <context>TTGTTTCAGT[A/T]TTTTTAACTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTCTAATAATTATATGTTGTTTTTTAGATTGATATTTTTTGTTTCAGT</left_flank>
        <right_flank>TTTTTAACTTTTGGATATAGTTTTCGTCTTTGAAAGAGATTTTTTTTAAG</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTTTTTTAGATTGATATTTTTTGTTTCAGTATTTTTAACTTTTGGATATAGTTTTCGTCTTTGAAAGAGATTTTTTTTAAGATTTAATAAAGTTATAAATCACTACAGGAGTACAGTTTTTATAAATTTTCTTAGTTTAGCTTTAGTTATTTTTTCTATTGGATTTTTATGATGATTAAATTTTAATTTACTTAATGTACCTAGATTATTTCTTTATGTTGATTTTTTTGGTCCTTTAGTTTTTTTATTTATAATAATCTTTTTATCATTTATAGTATTAAAAATGTTATTTAAAGAATTAACTTATAAGTTTTTAGTAGATTATTTAGCTAAAAATAGGATCTATAAAATAAAAAATTTAAAATTTATAGATTTGTTCTTAAATAATATCAATTCTAAGGGGTATACCTTATTTTTAAGAGTTGGAATTTTTAAAAATTACTATATAAAAAGGTTAAATTTCAGCAGTGTTGTAATTTTAATTTTTATTTTTTTTATAATTTGTTAAATGGGGTTTTAGTTTAGTAAAAA</canonical>
            <polymorphic>GAAGAACATTGGTTACAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTTTTTTAGATTGATATTTTTTGTTTCAGTWTTTTTAACTTTTGGATATAGTTTTCGTCTTTGAAAGAGATTTTTTTTAAGATTTAATAAAGTTATAAATCACTACAGGAGTACAGTTTTTATAAATTTTCTTAGTTTAGCTTTAGTTATTTTTTCTATTGGATTTTTATGATGATTAAATTTTAATTTACTTAATGTACCTAGATTATTTCTTTATGTTGATTTTTTTGGTCCTTTAGTTTTTTTATTTATAATAATCTTTTTATCATTTATAGTATTAAAAATGTTATTTAAAGAATTAACTTATAAGTTTTTAGTAGATTATTTAGCTAAAAATAGGATCTATAAAATAAAAAATTTAAAATTTATAGATTTGTTCTTAAATAATATCAATTCTAAGGGGTATACCTTATTTTTAAGAGTTGGAATTTTTAAAAATTACTATATAAAAAGGTTAAATTTCAGCAGTGTTGTAATTTTAATTTTTATTTTTTTTATAATTTGTTAAATGGGGTTTTAGTTTAGTAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAATTTACCCAATTTTATTCA</pcr_primer_p1>
		<pcr_primer_p2>AAAAACTGTACTCCTGTAGTGATTTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTTTTTTAGATTGATATTTTTTGTTTCAGTATTTTTAACTTTTGGATATAGTTTTCGTCTTTGAAAGAGATTTTTTTTAAGATTTAATAAAGTTATAAATCACTACAGGAGTACAGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTTTTTTAGATTGATATTTTTTGTTTCAGTWTTTTTAACTTTTGGATATAGTTTTCGTCTTTGAAAGAGATTTTTTTTAAGATTTAATAAAGTTATAAATCACTACAGGAGTACAGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32523</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>6429</contig_pos>
        <strand></strand>
        <context>TAACTTTTGG[A/G]TATAGTTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGTTGTTTTTTAGATTGATATTTTTTGTTTCAGTATTTTTAACTTTTGG</left_flank>
        <right_flank>TATAGTTTTCGTCTTTGAAAGAGATTTTTTTTAAGATTTAATAAAGTTAT</right_flank>
        <qual_score>47</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTTTTTTAGATTGATATTTTTTGTTTCAGTATTTTTAACTTTTGGATATAGTTTTCGTCTTTGAAAGAGATTTTTTTTAAGATTTAATAAAGTTATAAATCACTACAGGAGTACAGTTTTTATAAATTTTCTTAGTTTAGCTTTAGTTATTTTTTCTATTGGATTTTTATGATGATTAAATTTTAATTTACTTAATGTACCTAGATTATTTCTTTATGTTGATTTTTTTGGTCCTTTAGTTTTTTTATTTATAATAATCTTTTTATCATTTATAGTATTAAAAATGTTATTTAAAGAATTAACTTATAAGTTTTTAGTAGATTATTTAGCTAAAAATAGGATCTATAAAATAAAAAATTTAAAATTTATAGATTTGTTCTTAAATAATATCAATTCTAAGGGGTATACCTTATTTTTAAGAGTTGGAATTTTTAAAAATTACTATATAAAAAGGTTAAATTTCAGCAGTGTTGTAATTTTAATTTTTATTTTTTTTATAATTTGTTAAATGGGGTTTTAGTTTAGTAAAAATATGTGTTTTGCATA</canonical>
            <polymorphic>CAGCTGGTTTAATTTTATTGATGAATTTTAATAATTTAGTTTTACAAAAAAATTTTATTAGATTTGTACTGATTATTGGTCTATTTACTATGTTTTTTTCTAGATTAGCTAGATTGGTAGAAGAAGATTTGAAGAAGGTAGTAGCCTTGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTTTTTTAGATTGATATTTTTTGTTTCAGTATTTTTAACTTTTGGRTATAGTTTTCGTCTTTGAAAGAGATTTTTTTTAAGATTTAATAAAGTTATAAATCACTACAGGAGTACAGTTTTTATAAATTTTCTTAGTTTAGCTTTAGTTATTTTTTCTATTGGATTTTTATGATGATTAAATTTTAATTTACTTAATGTACCTAGATTATTTCTTTATGTTGATTTTTTTGGTCCTTTAGTTTTTTTATTTATAATAATCTTTTTATCATTTATAGTATTAAAAATGTTATTTAAAGAATTAACTTATAAGTTTTTAGTAGATTATTTAGCTAAAAATAGGATCTATAAAATAAAAAATTTAAAATTTATAGATTTGTTCTTAAATAATATCAATTCTAAGGGGTATACCTTATTTTTAAGAGTTGGAATTTTTAAAAATTACTATATAAAAAGGTTAAATTTCAGCAGTGTTGTAATTTTAATTTTTATTTTTTTTATAATTTGTTAAATGGGGTTTTAGTTTAGTAAAAATATGTGTTTTGCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAATTTACCCAATTTTATTCA</pcr_primer_p1>
		<pcr_primer_p2>AAAAACTGTACTCCTGTAGTGATTTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTTTTTTAGATTGATATTTTTTGTTTCAGTATTTTTAACTTTTGGATATAGTTTTCGTCTTTGAAAGAGATTTTTTTTAAGATTTAATAAAGTTATAAATCACTACAGGAGTACAGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTTTTTTAGATTGATATTTTTTGTTTCAGTATTTTTAACTTTTGGRTATAGTTTTCGTCTTTGAAAGAGATTTTTTTTAAGATTTAATAAAGTTATAAATCACTACAGGAGTACAGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32524</snp_id>
        <super_contig>c007501211.Contig1</super_contig>
        <contig_pos>6576</contig_pos>
        <strand></strand>
        <context>TTAATTTACT[T/C]AATGTACCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTAGTTATTTTTTCTATTGGATTTTTATGATGATTAAATTTTAATTTACT</left_flank>
        <right_flank>AATGTACCTAGATTATTTCTTTATGTTGATTTTTTTGGTCCTTTAGTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTTTTTTAGATTGATATTTTTTGTTTCAGTATTTTTAACTTTTGGATATAGTTTTCGTCTTTGAAAGAGATTTTTTTTAAGATTTAATAAAGTTATAAATCACTACAGGAGTACAGTTTTTATAAATTTTCTTAGTTTAGCTTTAGTTATTTTTTCTATTGGATTTTTATGATGATTAAATTTTAATTTACTTAATGTACCTAGATTATTTCTTTATGTTGATTTTTTTGGTCCTTTAGTTTTTTTATTTATAATAATCTTTTTATCATTTATAGTATTAAAAATGTTATTTAAAGAATTAACTTATAAGTTTTTAGTAGATTATTTAGCTAAAAATAGGATCTATAAAATAAAAAATTTAAAATTTATAGATTTGTTCTTAAATAATATCAATTCTAAGGGGTATACCTTATTTTTAAGAGTTGGAATTTTTAAAAATTACTATATAAAAAGGTTAAATTTCAGCAGTGTTGTAATTTTAATTTTTATTTTTTTTATAATTTGTTAAATGGGGTTTTAGTTTAGTAAAAATATGTGTTTTGCATACACAAGATTACAACTCTATTTGGGTGTACGTGTACGCGCGTTTATATATATATATATATATATATATAGTATATCATATTTATAATATAAATATGATATACATTATAATTATATATCATATTTATATTATAAATATGATATACACTA</canonical>
            <polymorphic>TGAGGACACTGTCACAAATAGGGTTTTCAATAGTTACTTTGGGTCTAGGGCTGAGATTTATTTCTTTTATTCACCTTGTTAGGCATGCACTTTTTAAGAGGTGTTTATTTATACAAGTTGGTTATATTATTCACTGTTCTTTTGGGCAACAAGATGGGCGTAATTATAGAAATAATGGGAATTTACCCAATTTTATTCAATTACAGATATTGGTAACTCTTTTTTGTCTTTGTGGATTGATTTTTTCCAGAGGTGCTGTAAGAAAGGATTTTATTTTAGAATTATTTTTTTCTAATAATTATATGTTGTTTTTTAGATTGATATTTTTTGTTTCAGTATTTTTAACTTTTGGATATAGTTTTCGTCTTTGAAAGAGATTTTTTTTAAGATTTAATAAAGTTATAAATCACTACAGGAGTACAGTTTTTATAAATTTTCTTAGTTTAGCTTTAGTTATTTTTTCTATTGGATTTTTATGATGATTAAATTTTAATTTACTYAATGTACCTAGATTATTTCTTTATGTTGATTTTTTTGGTCCTTTAGTTTTTTTATTTATAATAATCTTTTTATCATTTATAGTATTAAAAATGTTATTTAAAGAATTAACTTATAAGTTTTTAGTAGATTATTTAGCTAAAAATAGGATCTATAAAATAAAAAATTTAAAATTTATAGATTTGTTCTTAAATAATATCAATTCTAAGGGGTATACCTTATTTTTAAGAGTTGGAATTTTTAAAAATTACTATATAAAAAGGTTAAATTTCAGCAGTGTTGTAATTTTAATTTTTATTTTTTTTATAATTTGTTAAATGGGGTTTTAGTTTAGTAAAAATATGTGTTTTGCATACACAAGATTACAACTCTATTTGGGTGTACGTGTACGCGCGTTTATATATATATATATATATATATATAGTATATCATATTTATAATATAAATATGATATACATTATAATTATATATCATATTTATATTATAAATATGATATACACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>248 188 94 92 86 60 42 36 26 24 23 21 16 13 9 8 7 7</canonical_bands>
                <polymorphic_bands>248 188 95 94 92 60 42 36 26 24 23 21 16 13 8 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCACTACAGGAGTACAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TAAGGTATACCCCTTAGAATTGATA</pcr_primer_p2>
		<pcr_amplicon_size>316</pcr_amplicon_size>
		<canonical_amplicon>AAATCACTACAGGAGTACAGTTTTTATAAATTTTCTTAGTTTAGCTTTAGTTATTTTTTCTATTGGATTTTTATGATGATTAAATTTTAATTTACTTAATGTACCTAGATTATTTCTTTATGTTGATTTTTTTGGTCCTTTAGTTTTTTTATTTATAATAATCTTTTTATCATTTATAGTATTAAAAATGTTATTTAAAGAATTAACTTATAAGTTTTTAGTAGATTATTTAGCTAAAAATAGGATCTATAAAATAAAAAATTTAAAATTTATAGATTTGTTCTTAAATAATATCAATTCTAAGGGGTATACCTTA</canonical_amplicon>
		<polymorphic_amplicon>AAATCACTACAGGAGTACAGTTTTTATAAATTTTCTTAGTTTAGCTTTAGTTATTTTTTCTATTGGATTTTTATGATGATTAAATTTTAATTTACTYAATGTACCTAGATTATTTCTTTATGTTGATTTTTTTGGTCCTTTAGTTTTTTTATTTATAATAATCTTTTTATCATTTATAGTATTAAAAATGTTATTTAAAGAATTAACTTATAAGTTTTTAGTAGATTATTTAGCTAAAAATAGGATCTATAAAATAAAAAATTTAAAATTTATAGATTTGTTCTTAAATAATATCAATTCTAAGGGGTATACCTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32525</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>7802</contig_pos>
        <strand></strand>
        <context>TAGTTCAAAT[A/G]GTATTATTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAAT</left_flank>
        <right_flank>GTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGAT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCAGAGACTTCTTTAATGGGAAGGTAAGTTTTTGGCGATTGCTCTAGGCTATTTCGAATGAAGGTTTCCAGGAACTCAACTGCTCTATCAACCCAGATGAAGCGGTTGCTTTCGGAGCTGCCGTTCAAGCTGCAGTCCTCTCTGGAGTCAGAGATGACACCATCAAGGACGTCGTCCTCTATGACGTGACTCCTCTGAGTTTGGGAGTCAAGATTGTTGGAGGACGAATGAGCAATGTTATCAATCGTAATACACGTATCCCAGCAAATGCTACCGAGCCGTACACCACAGTTGATGACAATCAAACAGGTGTGGACTACTTCGTCTACGAAGGAGAACGAGCTATGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTTTCAATAAAGTTTTAGTTTGCATTTTCCAATATGATTTTTAAAAAAAAATTATTTTTCAAAATTTCAAATTATCGAAATTGACAGAAAATAACAGTTGA</canonical>
            <polymorphic>GCTCAGAGACTTCTTTAATGGGAAGGTAAGTTTTTGGCGATTGCTCTAGGCTATTTCGAATGAAGGTTTCCAGGAACTCAACTGCTCTATCAACCCAGATGAAGCGGTTGCTTTCGGAGCTGCCGTTCAAGCTGCAGTCCTCTCTGGAGTCAGAGATGACACCATCAAGGACGTCGTCCTCTATGACGTGACTCCTCTGAGTTTGGGAGTCAAGATTGTTGGAGGACGAATGAGCAATGTTATCAATCGTAATACACGTATCCCAGCAAATGCTACCGAGCCGTACACCACAGTTGATGACAATCAAACAGGTGTGGACTACTTCGTCTACGAAGGAGAACGAGCTATGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATRGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTTTCAATAAAGTTTTAGTTTGCATTTTCCAATATGATTTTTAAAAAAAAATTATTTTTCAAAATTTCAAATTATCGAAATTGACAGAAAATAACAGTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTTAAAGACAACCATCTACTC</pcr_primer_p1>
		<pcr_primer_p2>GTTGAGCATCCTCTTTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAAC</canonical_amplicon>
		<polymorphic_amplicon>TGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATRGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32526</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>7814</contig_pos>
        <strand></strand>
        <context>TATTATTATC[C/A]AATATGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATC</left_flank>
        <right_flank>AATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTAATGGGAAGGTAAGTTTTTGGCGATTGCTCTAGGCTATTTCGAATGAAGGTTTCCAGGAACTCAACTGCTCTATCAACCCAGATGAAGCGGTTGCTTTCGGAGCTGCCGTTCAAGCTGCAGTCCTCTCTGGAGTCAGAGATGACACCATCAAGGACGTCGTCCTCTATGACGTGACTCCTCTGAGTTTGGGAGTCAAGATTGTTGGAGGACGAATGAGCAATGTTATCAATCGTAATACACGTATCCCAGCAAATGCTACCGAGCCGTACACCACAGTTGATGACAATCAAACAGGTGTGGACTACTTCGTCTACGAAGGAGAACGAGCTATGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTTTCAATAAAGTTTTAGTTTGCATTTTCCAATATGATTTTTAAAAAAAAATTATTTTTCAAAATTTCAAATTATCGAAATTGACAGAAAATAACAGTTGATTCAAGGCTTTC</canonical>
            <polymorphic>CTTTAATGGGAAGGTAAGTTTTTGGCGATTGCTCTAGGCTATTTCGAATGAAGGTTTCCAGGAACTCAACTGCTCTATCAACCCAGATGAAGCGGTTGCTTTCGGAGCTGCCGTTCAAGCTGCAGTCCTCTCTGGAGTCAGAGATGACACCATCAAGGACGTCGTCCTCTATGACGTGACTCCTCTGAGTTTGGGAGTCAAGATTGTTGGAGGACGAATGAGCAATGTTATCAATCGTAATACACGTATCCCAGCAAATGCTACCGAGCCGTACACCACAGTTGATGACAATCAAACAGGTGTGGACTACTTCGTCTACGAAGGAGAACGAGCTATGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCMAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTTTCAATAAAGTTTTAGTTTGCATTTTCCAATATGATTTTTAAAAAAAAATTATTTTTCAAAATTTCAAATTATCGAAATTGACAGAAAATAACAGTTGATTCAAGGCTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTTAAAGACAACCATCTACTC</pcr_primer_p1>
		<pcr_primer_p2>GTTGAGCATCCTCTTTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAAC</canonical_amplicon>
		<polymorphic_amplicon>TGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCMAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32527</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>7871</contig_pos>
        <strand></strand>
        <context>CCAAGAAGCT[A/G]AACAGYTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCT</left_flank>
        <right_flank>AACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGGAACTCAACTGCTCTATCAACCCAGATGAAGCGGTTGCTTTCGGAGCTGCCGTTCAAGCTGCAGTCCTCTCTGGAGTCAGAGATGACACCATCAAGGACGTCGTCCTCTATGACGTGACTCCTCTGAGTTTGGGAGTCAAGATTGTTGGAGGACGAATGAGCAATGTTATCAATCGTAATACACGTATCCCAGCAAATGCTACCGAGCCGTACACCACAGTTGATGACAATCAAACAGGTGTGGACTACTTCGTCTACGAAGGAGAACGAGCTATGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTTTCAATAAAGTTTTAGTTTGCATTTTCCAATATGATTTTTAAAAAAAAATTATTTTTCAAAATTTCAAATTATCGAAATTGACAGAAAATAACAGTTGATTCAAGGCTTTCTTTAAGTCTCCAGTGATATCCTCGACGTTATCGATGCCAAGGTTGGAATTTTGAAAT</canonical>
            <polymorphic>CCAGGAACTCAACTGCTCTATCAACCCAGATGAAGCGGTTGCTTTCGGAGCTGCCGTTCAAGCTGCAGTCCTCTCTGGAGTCAGAGATGACACCATCAAGGACGTCGTCCTCTATGACGTGACTCCTCTGAGTTTGGGAGTCAAGATTGTTGGAGGACGAATGAGCAATGTTATCAATCGTAATACACGTATCCCAGCAAATGCTACCGAGCCGTACACCACAGTTGATGACAATCAAACAGGTGTGGACTACTTCGTCTACGAAGGAGAACGAGCTATGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTRAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTTTCAATAAAGTTTTAGTTTGCATTTTCCAATATGATTTTTAAAAAAAAATTATTTTTCAAAATTTCAAATTATCGAAATTGACAGAAAATAACAGTTGATTCAAGGCTTTCTTTAAGTCTCCAGTGATATCCTCGACGTTATCGATGCCAAGGTTGGAATTTTGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATGAAAAGGGAAGACTATCG</pcr_primer_p1>
		<pcr_primer_p2>CAACGAAGTGTTTGATCTACAA</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>AATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTG</canonical_amplicon>
		<polymorphic_amplicon>AATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTRAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32528</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>7877</contig_pos>
        <strand></strand>
        <context>AGCTRAACAG[T/C]TTGAAAAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAG</left_flank>
        <right_flank>TTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCG</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCAACTGCTCTATCAACCCAGATGAAGCGGTTGCTTTCGGAGCTGCCGTTCAAGCTGCAGTCCTCTCTGGAGTCAGAGATGACACCATCAAGGACGTCGTCCTCTATGACGTGACTCCTCTGAGTTTGGGAGTCAAGATTGTTGGAGGACGAATGAGCAATGTTATCAATCGTAATACACGTATCCCAGCAAATGCTACCGAGCCGTACACCACAGTTGATGACAATCAAACAGGTGTGGACTACTTCGTCTACGAAGGAGAACGAGCTATGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTTTCAATAAAGTTTTAGTTTGCATTTTCCAATATGATTTTTAAAAAAAAATTATTTTTCAAAATTTCAAATTATCGAAATTGACAGAAAATAACAGTTGATTCAAGGCTTTCTTTAAGTCTCCAGTGATATCCTCGACGTTATCGATGCCAAGGTTGGAATTTTGAAATTATCCG</canonical>
            <polymorphic>ACTCAACTGCTCTATCAACCCAGATGAAGCGGTTGCTTTCGGAGCTGCCGTTCAAGCTGCAGTCCTCTCTGGAGTCAGAGATGACACCATCAAGGACGTCGTCCTCTATGACGTGACTCCTCTGAGTTTGGGAGTCAAGATTGTTGGAGGACGAATGAGCAATGTTATCAATCGTAATACACGTATCCCAGCAAATGCTACCGAGCCGTACACCACAGTTGATGACAATCAAACAGGTGTGGACTACTTCGTCTACGAAGGAGAACGAGCTATGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGYTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTTTCAATAAAGTTTTAGTTTGCATTTTCCAATATGATTTTTAAAAAAAAATTATTTTTCAAAATTTCAAATTATCGAAATTGACAGAAAATAACAGTTGATTCAAGGCTTTCTTTAAGTCTCCAGTGATATCCTCGACGTTATCGATGCCAAGGTTGGAATTTTGAAATTATCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>281 217 149 116 98 80 59</canonical_bands>
                <polymorphic_bands>379 217 149 116 80 59</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATATGAAAAGGGAAGACTATCG</pcr_primer_p1>
		<pcr_primer_p2>CAACGAAGTGTTTGATCTACAA</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>AATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTG</canonical_amplicon>
		<polymorphic_amplicon>AATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGYTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32529</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>7902</contig_pos>
        <strand></strand>
        <context>GCTCAACGAA[G/T]AGACAAGGCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAA</left_flank>
        <right_flank>AGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGCGGTTGCTTTCGGAGCTGCCGTTCAAGCTGCAGTCCTCTCTGGAGTCAGAGATGACACCATCAAGGACGTCGTCCTCTATGACGTGACTCCTCTGAGTTTGGGAGTCAAGATTGTTGGAGGACGAATGAGCAATGTTATCAATCGTAATACACGTATCCCAGCAAATGCTACCGAGCCGTACACCACAGTTGATGACAATCAAACAGGTGTGGACTACTTCGTCTACGAAGGAGAACGAGCTATGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTTTCAATAAAGTTTTAGTTTGCATTTTCCAATATGATTTTTAAAAAAAAATTATTTTTCAAAATTTCAAATTATCGAAATTGACAGAAAATAACAGTTGATTCAAGGCTTTCTTTAAGTCTCCAGTGATATCCTCGACGTTATCGATGCCAAGGTTGGAATTTTGAAATTATCCGATTTCCAGAAACTTCTAGAAACTTC</canonical>
            <polymorphic>GAAGCGGTTGCTTTCGGAGCTGCCGTTCAAGCTGCAGTCCTCTCTGGAGTCAGAGATGACACCATCAAGGACGTCGTCCTCTATGACGTGACTCCTCTGAGTTTGGGAGTCAAGATTGTTGGAGGACGAATGAGCAATGTTATCAATCGTAATACACGTATCCCAGCAAATGCTACCGAGCCGTACACCACAGTTGATGACAATCAAACAGGTGTGGACTACTTCGTCTACGAAGGAGAACGAGCTATGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAKAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTTTCAATAAAGTTTTAGTTTGCATTTTCCAATATGATTTTTAAAAAAAAATTATTTTTCAAAATTTCAAATTATCGAAATTGACAGAAAATAACAGTTGATTCAAGGCTTTCTTTAAGTCTCCAGTGATATCCTCGACGTTATCGATGCCAAGGTTGGAATTTTGAAATTATCCGATTTCCAGAAACTTCTAGAAACTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATGAAAAGGGAAGACTATCG</pcr_primer_p1>
		<pcr_primer_p2>CAACGAAGTGTTTGATCTACAA</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>AATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTG</canonical_amplicon>
		<polymorphic_amplicon>AATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAKAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32530</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>7922</contig_pos>
        <strand></strand>
        <context>GAATGCCATA[G/A]ACGCGTTTGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATA</left_flank>
        <right_flank>ACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTAC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCCGTTCAAGCTGCAGTCCTCTCTGGAGTCAGAGATGACACCATCAAGGACGTCGTCCTCTATGACGTGACTCCTCTGAGTTTGGGAGTCAAGATTGTTGGAGGACGAATGAGCAATGTTATCAATCGTAATACACGTATCCCAGCAAATGCTACCGAGCCGTACACCACAGTTGATGACAATCAAACAGGTGTGGACTACTTCGTCTACGAAGGAGAACGAGCTATGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTTTCAATAAAGTTTTAGTTTGCATTTTCCAATATGATTTTTAAAAAAAAATTATTTTTCAAAATTTCAAATTATCGAAATTGACAGAAAATAACAGTTGATTCAAGGCTTTCTTTAAGTCTCCAGTGATATCCTCGACGTTATCGATGCCAAGGTTGGAATTTTGAAATTATCCGATTTCCAGAAACTTCTAGAAACTTCTCTAAACTGAATCTCAAAAG</canonical>
            <polymorphic>TGCCGTTCAAGCTGCAGTCCTCTCTGGAGTCAGAGATGACACCATCAAGGACGTCGTCCTCTATGACGTGACTCCTCTGAGTTTGGGAGTCAAGATTGTTGGAGGACGAATGAGCAATGTTATCAATCGTAATACACGTATCCCAGCAAATGCTACCGAGCCGTACACCACAGTTGATGACAATCAAACAGGTGTGGACTACTTCGTCTACGAAGGAGAACGAGCTATGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATARACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTTTCAATAAAGTTTTAGTTTGCATTTTCCAATATGATTTTTAAAAAAAAATTATTTTTCAAAATTTCAAATTATCGAAATTGACAGAAAATAACAGTTGATTCAAGGCTTTCTTTAAGTCTCCAGTGATATCCTCGACGTTATCGATGCCAAGGTTGGAATTTTGAAATTATCCGATTTCCAGAAACTTCTAGAAACTTCTCTAAACTGAATCTCAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATGAAAAGGGAAGACTATCG</pcr_primer_p1>
		<pcr_primer_p2>CAACGAAGTGTTTGATCTACAA</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>AATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTG</canonical_amplicon>
		<polymorphic_amplicon>AATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATARACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32531</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>7947</contig_pos>
        <strand></strand>
        <context>TACGTGTATC[G/A]AGTGAAACGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATC</left_flank>
        <right_flank>AGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGTCAGAGATGACACCATCAAGGACGTCGTCCTCTATGACGTGACTCCTCTGAGTTTGGGAGTCAAGATTGTTGGAGGACGAATGAGCAATGTTATCAATCGTAATACACGTATCCCAGCAAATGCTACCGAGCCGTACACCACAGTTGATGACAATCAAACAGGTGTGGACTACTTCGTCTACGAAGGAGAACGAGCTATGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTTTCAATAAAGTTTTAGTTTGCATTTTCCAATATGATTTTTAAAAAAAAATTATTTTTCAAAATTTCAAATTATCGAAATTGACAGAAAATAACAGTTGATTCAAGGCTTTCTTTAAGTCTCCAGTGATATCCTCGACGTTATCGATGCCAAGGTTGGAATTTTGAAATTATCCGATTTCCAGAAACTTCTAGAAACTTCTCTAAACTGAATCTCAAAAGTCCAGGAGCCACCGATGATATTTGC</canonical>
            <polymorphic>GGAGTCAGAGATGACACCATCAAGGACGTCGTCCTCTATGACGTGACTCCTCTGAGTTTGGGAGTCAAGATTGTTGGAGGACGAATGAGCAATGTTATCAATCGTAATACACGTATCCCAGCAAATGCTACCGAGCCGTACACCACAGTTGATGACAATCAAACAGGTGTGGACTACTTCGTCTACGAAGGAGAACGAGCTATGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCRAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTTTCAATAAAGTTTTAGTTTGCATTTTCCAATATGATTTTTAAAAAAAAATTATTTTTCAAAATTTCAAATTATCGAAATTGACAGAAAATAACAGTTGATTCAAGGCTTTCTTTAAGTCTCCAGTGATATCCTCGACGTTATCGATGCCAAGGTTGGAATTTTGAAATTATCCGATTTCCAGAAACTTCTAGAAACTTCTCTAAACTGAATCTCAAAAGTCCAGGAGCCACCGATGATATTTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>297 197 109 101 93 93 60 24 17 9</canonical_bands>
                <polymorphic_bands>297 197 110 109 101 93 60 24 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATATGAAAAGGGAAGACTATCG</pcr_primer_p1>
		<pcr_primer_p2>CAACGAAGTGTTTGATCTACAA</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>AATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTG</canonical_amplicon>
		<polymorphic_amplicon>AATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCRAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32532</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>7992</contig_pos>
        <strand></strand>
        <context>CTGAGCTCGG[A/C]ASAACGGAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGG</left_flank>
        <right_flank>ACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCCTCTGAGTTTGGGAGTCAAGATTGTTGGAGGACGAATGAGCAATGTTATCAATCGTAATACACGTATCCCAGCAAATGCTACCGAGCCGTACACCACAGTTGATGACAATCAAACAGGTGTGGACTACTTCGTCTACGAAGGAGAACGAGCTATGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTTTCAATAAAGTTTTAGTTTGCATTTTCCAATATGATTTTTAAAAAAAAATTATTTTTCAAAATTTCAAATTATCGAAATTGACAGAAAATAACAGTTGATTCAAGGCTTTCTTTAAGTCTCCAGTGATATCCTCGACGTTATCGATGCCAAGGTTGGAATTTTGAAATTATCCGATTTCCAGAAACTTCTAGAAACTTCTCTAAACTGAATCTCAAAAGTCCAGGAGCCACCGATGATATTTGCACCAAGTTGTTTTCTATGAAACATTGATAATGGATATATTAGATT</canonical>
            <polymorphic>ACTCCTCTGAGTTTGGGAGTCAAGATTGTTGGAGGACGAATGAGCAATGTTATCAATCGTAATACACGTATCCCAGCAAATGCTACCGAGCCGTACACCACAGTTGATGACAATCAAACAGGTGTGGACTACTTCGTCTACGAAGGAGAACGAGCTATGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGMACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTTTCAATAAAGTTTTAGTTTGCATTTTCCAATATGATTTTTAAAAAAAAATTATTTTTCAAAATTTCAAATTATCGAAATTGACAGAAAATAACAGTTGATTCAAGGCTTTCTTTAAGTCTCCAGTGATATCCTCGACGTTATCGATGCCAAGGTTGGAATTTTGAAATTATCCGATTTCCAGAAACTTCTAGAAACTTCTCTAAACTGAATCTCAAAAGTCCAGGAGCCACCGATGATATTTGCACCAAGTTGTTTTCTATGAAACATTGATAATGGATATATTAGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>329 229 173 116 57 46 42 8</canonical_bands>
                <polymorphic_bands>329 286 173 116 46 42 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAAAAAGAGGATGCTCAA</pcr_primer_p1>
		<pcr_primer_p2>GTGCATCTAGTTAGCTCTCCAC</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>TTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCAC</canonical_amplicon>
		<polymorphic_amplicon>TTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGMACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32533</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>7994</contig_pos>
        <strand></strand>
        <context>GAGCTCGGMA[C/G]AACGGAACCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAA</left_flank>
        <right_flank>AACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTCTGAGTTTGGGAGTCAAGATTGTTGGAGGACGAATGAGCAATGTTATCAATCGTAATACACGTATCCCAGCAAATGCTACCGAGCCGTACACCACAGTTGATGACAATCAAACAGGTGTGGACTACTTCGTCTACGAAGGAGAACGAGCTATGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTTTCAATAAAGTTTTAGTTTGCATTTTCCAATATGATTTTTAAAAAAAAATTATTTTTCAAAATTTCAAATTATCGAAATTGACAGAAAATAACAGTTGATTCAAGGCTTTCTTTAAGTCTCCAGTGATATCCTCGACGTTATCGATGCCAAGGTTGGAATTTTGAAATTATCCGATTTCCAGAAACTTCTAGAAACTTCTCTAAACTGAATCTCAAAAGTCCAGGAGCCACCGATGATATTTGCACCAAGTTGTTTTCTATGAAACATTGATAATGGATATATTAGATTCA</canonical>
            <polymorphic>TCCTCTGAGTTTGGGAGTCAAGATTGTTGGAGGACGAATGAGCAATGTTATCAATCGTAATACACGTATCCCAGCAAATGCTACCGAGCCGTACACCACAGTTGATGACAATCAAACAGGTGTGGACTACTTCGTCTACGAAGGAGAACGAGCTATGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAASAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTTTCAATAAAGTTTTAGTTTGCATTTTCCAATATGATTTTTAAAAAAAAATTATTTTTCAAAATTTCAAATTATCGAAATTGACAGAAAATAACAGTTGATTCAAGGCTTTCTTTAAGTCTCCAGTGATATCCTCGACGTTATCGATGCCAAGGTTGGAATTTTGAAATTATCCGATTTCCAGAAACTTCTAGAAACTTCTCTAAACTGAATCTCAAAAGTCCAGGAGCCACCGATGATATTTGCACCAAGTTGTTTTCTATGAAACATTGATAATGGATATATTAGATTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAAAAAGAGGATGCTCAA</pcr_primer_p1>
		<pcr_primer_p2>GTGCATCTAGTTAGCTCTCCAC</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>TTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCAC</canonical_amplicon>
		<polymorphic_amplicon>TTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAASAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32534</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>8013</contig_pos>
        <strand></strand>
        <context>CGCGCGGAAG[G/A]GCTTGTAGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAG</left_flank>
        <right_flank>GCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGATTGTTGGAGGACGAATGAGCAATGTTATCAATCGTAATACACGTATCCCAGCAAATGCTACCGAGCCGTACACCACAGTTGATGACAATCAAACAGGTGTGGACTACTTCGTCTACGAAGGAGAACGAGCTATGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTTTCAATAAAGTTTTAGTTTGCATTTTCCAATATGATTTTTAAAAAAAAATTATTTTTCAAAATTTCAAATTATCGAAATTGACAGAAAATAACAGTTGATTCAAGGCTTTCTTTAAGTCTCCAGTGATATCCTCGACGTTATCGATGCCAAGGTTGGAATTTTGAAATTATCCGATTTCCAGAAACTTCTAGAAACTTCTCTAAACTGAATCTCAAAAGTCCAGGAGCCACCGATGATATTTGCACCAAGTTGTTTTCTATGAAACATTGATAATGGATATATTAGATTCATTACCACCCAGCATGGATG</canonical>
            <polymorphic>AAGATTGTTGGAGGACGAATGAGCAATGTTATCAATCGTAATACACGTATCCCAGCAAATGCTACCGAGCCGTACACCACAGTTGATGACAATCAAACAGGTGTGGACTACTTCGTCTACGAAGGAGAACGAGCTATGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGRGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTTTCAATAAAGTTTTAGTTTGCATTTTCCAATATGATTTTTAAAAAAAAATTATTTTTCAAAATTTCAAATTATCGAAATTGACAGAAAATAACAGTTGATTCAAGGCTTTCTTTAAGTCTCCAGTGATATCCTCGACGTTATCGATGCCAAGGTTGGAATTTTGAAATTATCCGATTTCCAGAAACTTCTAGAAACTTCTCTAAACTGAATCTCAAAAGTCCAGGAGCCACCGATGATATTTGCACCAAGTTGTTTTCTATGAAACATTGATAATGGATATATTAGATTCATTACCACCCAGCATGGATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>184 179 121 113 84 83 69 64 38 32 28 5</canonical_bands>
                <polymorphic_bands>184 179 121 113 112 83 69 64 38 32 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACTCGAAAAGTACGGTGAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGAACAAGTTTAGAAACACA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGRGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32535</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>8059</contig_pos>
        <strand></strand>
        <context>ACGATATCGA[C/G]AAAWATCART</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGA</left_flank>
        <right_flank>AAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATCCCAGCAAATGCTACCGAGCCGTACACCACAGTTGATGACAATCAAACAGGTGTGGACTACTTCGTCTACGAAGGAGAACGAGCTATGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTTTCAATAAAGTTTTAGTTTGCATTTTCCAATATGATTTTTAAAAAAAAATTATTTTTCAAAATTTCAAATTATCGAAATTGACAGAAAATAACAGTTGATTCAAGGCTTTCTTTAAGTCTCCAGTGATATCCTCGACGTTATCGATGCCAAGGTTGGAATTTTGAAATTATCCGATTTCCAGAAACTTCTAGAAACTTCTCTAAACTGAATCTCAAAAGTCCAGGAGCCACCGATGATATTTGCACCAAGTTGTTTTCTATGAAACATTGATAATGGATATATTAGATTCATTACCACCCAGCATGGATGACGAGTTTCAAGGACTGCAACAAGTAAGCTCTAATCAGACTCTTCT</canonical>
            <polymorphic>GTATCCCAGCAAATGCTACCGAGCCGTACACCACAGTTGATGACAATCAAACAGGTGTGGACTACTTCGTCTACGAAGGAGAACGAGCTATGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGASAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTTTCAATAAAGTTTTAGTTTGCATTTTCCAATATGATTTTTAAAAAAAAATTATTTTTCAAAATTTCAAATTATCGAAATTGACAGAAAATAACAGTTGATTCAAGGCTTTCTTTAAGTCTCCAGTGATATCCTCGACGTTATCGATGCCAAGGTTGGAATTTTGAAATTATCCGATTTCCAGAAACTTCTAGAAACTTCTCTAAACTGAATCTCAAAAGTCCAGGAGCCACCGATGATATTTGCACCAAGTTGTTTTCTATGAAACATTGATAATGGATATATTAGATTCATTACCACCCAGCATGGATGACGAGTTTCAAGGACTGCAACAAGTAAGCTCTAATCAGACTCTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTCGAAAAGTACGGTGAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGAACAAGTTTAGAAACACA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGASAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32536</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>8063</contig_pos>
        <strand></strand>
        <context>TATCGASAAA[T/A]ATCARTTAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAA</left_flank>
        <right_flank>ATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCAGCAAATGCTACCGAGCCGTACACCACAGTTGATGACAATCAAACAGGTGTGGACTACTTCGTCTACGAAGGAGAACGAGCTATGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTTTCAATAAAGTTTTAGTTTGCATTTTCCAATATGATTTTTAAAAAAAAATTATTTTTCAAAATTTCAAATTATCGAAATTGACAGAAAATAACAGTTGATTCAAGGCTTTCTTTAAGTCTCCAGTGATATCCTCGACGTTATCGATGCCAAGGTTGGAATTTTGAAATTATCCGATTTCCAGAAACTTCTAGAAACTTCTCTAAACTGAATCTCAAAAGTCCAGGAGCCACCGATGATATTTGCACCAAGTTGTTTTCTATGAAACATTGATAATGGATATATTAGATTCATTACCACCCAGCATGGATGACGAGTTTCAAGGACTGCAACAAGTAAGCTCTAATCAGACTCTTCTAACT</canonical>
            <polymorphic>CCCAGCAAATGCTACCGAGCCGTACACCACAGTTGATGACAATCAAACAGGTGTGGACTACTTCGTCTACGAAGGAGAACGAGCTATGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAAWATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTTTCAATAAAGTTTTAGTTTGCATTTTCCAATATGATTTTTAAAAAAAAATTATTTTTCAAAATTTCAAATTATCGAAATTGACAGAAAATAACAGTTGATTCAAGGCTTTCTTTAAGTCTCCAGTGATATCCTCGACGTTATCGATGCCAAGGTTGGAATTTTGAAATTATCCGATTTCCAGAAACTTCTAGAAACTTCTCTAAACTGAATCTCAAAAGTCCAGGAGCCACCGATGATATTTGCACCAAGTTGTTTTCTATGAAACATTGATAATGGATATATTAGATTCATTACCACCCAGCATGGATGACGAGTTTCAAGGACTGCAACAAGTAAGCTCTAATCAGACTCTTCTAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTCGAAAAGTACGGTGAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGAACAAGTTTAGAAACACA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAAWATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32537</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>8068</contig_pos>
        <strand></strand>
        <context>ASAAAWATCA[G/A]TTAGAGAATG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCA</left_flank>
        <right_flank>TTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATGCTACCGAGCCGTACACCACAGTTGATGACAATCAAACAGGTGTGGACTACTTCGTCTACGAAGGAGAACGAGCTATGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTTTCAATAAAGTTTTAGTTTGCATTTTCCAATATGATTTTTAAAAAAAAATTATTTTTCAAAATTTCAAATTATCGAAATTGACAGAAAATAACAGTTGATTCAAGGCTTTCTTTAAGTCTCCAGTGATATCCTCGACGTTATCGATGCCAAGGTTGGAATTTTGAAATTATCCGATTTCCAGAAACTTCTAGAAACTTCTCTAAACTGAATCTCAAAAGTCCAGGAGCCACCGATGATATTTGCACCAAGTTGTTTTCTATGAAACATTGATAATGGATATATTAGATTCATTACCACCCAGCATGGATGACGAGTTTCAAGGACTGCAACAAGTAAGCTCTAATCAGACTCTTCTAACTTGACT</canonical>
            <polymorphic>CAAATGCTACCGAGCCGTACACCACAGTTGATGACAATCAAACAGGTGTGGACTACTTCGTCTACGAAGGAGAACGAGCTATGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCARTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTTTCAATAAAGTTTTAGTTTGCATTTTCCAATATGATTTTTAAAAAAAAATTATTTTTCAAAATTTCAAATTATCGAAATTGACAGAAAATAACAGTTGATTCAAGGCTTTCTTTAAGTCTCCAGTGATATCCTCGACGTTATCGATGCCAAGGTTGGAATTTTGAAATTATCCGATTTCCAGAAACTTCTAGAAACTTCTCTAAACTGAATCTCAAAAGTCCAGGAGCCACCGATGATATTTGCACCAAGTTGTTTTCTATGAAACATTGATAATGGATATATTAGATTCATTACCACCCAGCATGGATGACGAGTTTCAAGGACTGCAACAAGTAAGCTCTAATCAGACTCTTCTAACTTGACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTCGAAAAGTACGGTGAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGAACAAGTTTAGAAACACA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCARTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32538</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>8092</contig_pos>
        <strand></strand>
        <context>AAAAGATGTT[T/C]AAAGAGCTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTT</left_flank>
        <right_flank>AAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTTGATGACAATCAAACAGGTGTGGACTACTTCGTCTACGAAGGAGAACGAGCTATGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTTTCAATAAAGTTTTAGTTTGCATTTTCCAATATGATTTTTAAAAAAAAATTATTTTTCAAAATTTCAAATTATCGAAATTGACAGAAAATAACAGTTGATTCAAGGCTTTCTTTAAGTCTCCAGTGATATCCTCGACGTTATCGATGCCAAGGTTGGAATTTTGAAATTATCCGATTTCCAGAAACTTCTAGAAACTTCTCTAAACTGAATCTCAAAAGTCCAGGAGCCACCGATGATATTTGCACCAAGTTGTTTTCTATGAAACATTGATAATGGATATATTAGATTCATTACCACCCAGCATGGATGACGAGTTTCAAGGACTGCAACAAGTAAGCTCTAATCAGACTCTTCTAACTTGACTAAATGAGAAATCAGAGAAAAGTTG</canonical>
            <polymorphic>CAGTTGATGACAATCAAACAGGTGTGGACTACTTCGTCTACGAAGGAGAACGAGCTATGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTYAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTTTCAATAAAGTTTTAGTTTGCATTTTCCAATATGATTTTTAAAAAAAAATTATTTTTCAAAATTTCAAATTATCGAAATTGACAGAAAATAACAGTTGATTCAAGGCTTTCTTTAAGTCTCCAGTGATATCCTCGACGTTATCGATGCCAAGGTTGGAATTTTGAAATTATCCGATTTCCAGAAACTTCTAGAAACTTCTCTAAACTGAATCTCAAAAGTCCAGGAGCCACCGATGATATTTGCACCAAGTTGTTTTCTATGAAACATTGATAATGGATATATTAGATTCATTACCACCCAGCATGGATGACGAGTTTCAAGGACTGCAACAAGTAAGCTCTAATCAGACTCTTCTAACTTGACTAAATGAGAAATCAGAGAAAAGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 349 151</canonical_bands>
                <polymorphic_bands>651 349</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>438 276 87 74 64 61</canonical_bands>
                <polymorphic_bands>502 276 87 74 61</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACTCGAAAAGTACGGTGAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGAACAAGTTTAGAAACACA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTYAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32539</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>8103</contig_pos>
        <strand></strand>
        <context>AAAGAGCTCT[T/G]TGAGGWGATG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCT</left_flank>
        <right_flank>TGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCAAACAGGTGTGGACTACTTCGTCTACGAAGGAGAACGAGCTATGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTTTCAATAAAGTTTTAGTTTGCATTTTCCAATATGATTTTTAAAAAAAAATTATTTTTCAAAATTTCAAATTATCGAAATTGACAGAAAATAACAGTTGATTCAAGGCTTTCTTTAAGTCTCCAGTGATATCCTCGACGTTATCGATGCCAAGGTTGGAATTTTGAAATTATCCGATTTCCAGAAACTTCTAGAAACTTCTCTAAACTGAATCTCAAAAGTCCAGGAGCCACCGATGATATTTGCACCAAGTTGTTTTCTATGAAACATTGATAATGGATATATTAGATTCATTACCACCCAGCATGGATGACGAGTTTCAAGGACTGCAACAAGTAAGCTCTAATCAGACTCTTCTAACTTGACTAAATGAGAAATCAGAGAAAAGTTGTCAACTACAAA</canonical>
            <polymorphic>AATCAAACAGGTGTGGACTACTTCGTCTACGAAGGAGAACGAGCTATGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTKTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTTTCAATAAAGTTTTAGTTTGCATTTTCCAATATGATTTTTAAAAAAAAATTATTTTTCAAAATTTCAAATTATCGAAATTGACAGAAAATAACAGTTGATTCAAGGCTTTCTTTAAGTCTCCAGTGATATCCTCGACGTTATCGATGCCAAGGTTGGAATTTTGAAATTATCCGATTTCCAGAAACTTCTAGAAACTTCTCTAAACTGAATCTCAAAAGTCCAGGAGCCACCGATGATATTTGCACCAAGTTGTTTTCTATGAAACATTGATAATGGATATATTAGATTCATTACCACCCAGCATGGATGACGAGTTTCAAGGACTGCAACAAGTAAGCTCTAATCAGACTCTTCTAACTTGACTAAATGAGAAATCAGAGAAAAGTTGTCAACTACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTCGAAAAGTACGGTGAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGAACAAGTTTAGAAACACA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTKTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32540</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>8109</contig_pos>
        <strand></strand>
        <context>CTCTKTGAGG[T/A]GATGAAGATC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGG</left_flank>
        <right_flank>GATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGGTGTGGACTACTTCGTCTACGAAGGAGAACGAGCTATGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTTTCAATAAAGTTTTAGTTTGCATTTTCCAATATGATTTTTAAAAAAAAATTATTTTTCAAAATTTCAAATTATCGAAATTGACAGAAAATAACAGTTGATTCAAGGCTTTCTTTAAGTCTCCAGTGATATCCTCGACGTTATCGATGCCAAGGTTGGAATTTTGAAATTATCCGATTTCCAGAAACTTCTAGAAACTTCTCTAAACTGAATCTCAAAAGTCCAGGAGCCACCGATGATATTTGCACCAAGTTGTTTTCTATGAAACATTGATAATGGATATATTAGATTCATTACCACCCAGCATGGATGACGAGTTTCAAGGACTGCAACAAGTAAGCTCTAATCAGACTCTTCTAACTTGACTAAATGAGAAATCAGAGAAAAGTTGTCAACTACAAAAATGTA</canonical>
            <polymorphic>ACAGGTGTGGACTACTTCGTCTACGAAGGAGAACGAGCTATGGTTAAAGACAACCATCTACTCGGACATTTCAAGCTCTGTGGAATCCCACCAGCGCCACGGGGAACTCCGACAATTGATGTGACTTTTGATATCGATGCAAATGGGATTCTGAATGTCACTGCTAAAGATAGGGGTTCTGGTAGTTCAAATAGTATTATTATCCAATATGAAAAGGGAAGACTATCGCAGGCAGATATTGATCGAATGGTCCAAGAAGCTAAACAGTTTGAAAAAGAGGATGCTCAACGAAGAGACAAGGCGAATGCCATAGACGCGTTTGCAGATTACGTGTATCGAGTGAAACGGGCACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGWGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTTTCAATAAAGTTTTAGTTTGCATTTTCCAATATGATTTTTAAAAAAAAATTATTTTTCAAAATTTCAAATTATCGAAATTGACAGAAAATAACAGTTGATTCAAGGCTTTCTTTAAGTCTCCAGTGATATCCTCGACGTTATCGATGCCAAGGTTGGAATTTTGAAATTATCCGATTTCCAGAAACTTCTAGAAACTTCTCTAAACTGAATCTCAAAAGTCCAGGAGCCACCGATGATATTTGCACCAAGTTGTTTTCTATGAAACATTGATAATGGATATATTAGATTCATTACCACCCAGCATGGATGACGAGTTTCAAGGACTGCAACAAGTAAGCTCTAATCAGACTCTTCTAACTTGACTAAATGAGAAATCAGAGAAAAGTTGTCAACTACAAAAATGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>173 145 109 104 81 73 53 52 41 37 24 18 16 15 10 9 9 9 8 7 5 2</canonical_bands>
                <polymorphic_bands>173 145 109 104 91 73 53 52 41 37 24 18 16 15 9 9 9 8 7 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACTCGAAAAGTACGGTGAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGAACAAGTTTAGAAACACA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGTGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CACTCGAAAAGTACGGTGATCGGCTGAGCTCGGAACAACGGAACCGCGCGGAAGGGCTTGTAGATCAAACACTTCGTTGGACGAAATCCGACGATATCGACAAATATCAGTTAGAGAATGTCGAAAAGATGTTTAAAGAGCTCTTTGAGGWGATGAAGATCACGGTGGAGAGCTAACTAGATGCACAGGATTCCAATTAATTTTTGATTTCTTTATTCTTACTGTGTTTCTAAACTTGTTCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32541</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>97336</contig_pos>
        <strand>+</strand>
        <context>CCGGACACAC[A/C]GACCCATGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTAATTGGCCAATTAGGCGATTTTTCGCTCCTAGGGACATCCGGACACAC</left_flank>
        <right_flank>GACCCATGTATATAGCGAAAATGGCTTTTGAATAAAGCCATTTTTCGCTC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCGAAAATCAGTACAAAAAGCCGTCGTTTCTTCCGTTTTTTTCGATTTTTAAGAAGAAAAAAAATTTTAGCAAAAAAGTCCCAAATGTCGTCTATCGTGTGTCACCCGATTATCAAAAACGGAATCGCGACGGACGCCCGTATCAAAAAGCAACGCCCACCGCCACTGGTGGTCGCCAGGCCTAGAGATTTGGTACAAAATTGAATTTACTAGAAAAATTGATTTTTAGGCCTAATTAGCCCAATTAAACGTTTTCTAATTGCAGATCCAAGAAGCATGCGAACGTCTGGTGCTCAGCGATCAGCAGTTGCGGCGAATTATGGTGCTCATGGAGAAAAGTATGGAGCAGGGGCTCTCCGGAAAGAAGGCGGCCGTTAAGATGCTGCCAACGTATGTGGATGCGGTGCCGAATGGGACAGAGGTAATTAGCGGAGTTAATTGGTCGAGTTAATTGGCCAATTAGGCGATTTTTCGCTCCTAGGGACATCCGGACACACCGACCCATGTATATAGCGAAAATGGCTTTTGAATAAAGCCATTTTTCGCTCCCATGGGCATCTGGACACACAGAGCTATGGATAGAGCAAAATTAGCGATTTTTTTTTTGCAGAAAGGCGACTTCCTTGCTCTGGATTTGGGCGGTACGAACTTCCGAGTGCTTCACATCAAGCTCGAGGGAAAAGAGACAAAAATGACGGGAAAGATTTTCCGCGTCCCCGAGAGCATCATGCGAGGAACTGGAGAAGCGGTAAGAGAGCGATTTAGAGCAATGTTAACCAGAAAAATTGGTTTTGGAGCAGTTTTTGAGCCTAGAGAACTCAAAATTAGAGATTTTTTAACCCCTCAAACGAACATCCGGACATCAGGATGCACAGAAAAAGTTGATTTTGAGCCATTTTTAGCTCAAAATCTGGAATTTTTGATGTTGGACAAACAGATGGACAGAAATTTGAGAAAAATTGATTTCTAGGCATTTCCAACCCCAGAAATGCGATTTT</canonical>
            <polymorphic>TGTCGAAAATCAGTACAAAAAGCCGTCGTTTCTTCCGTTTTTTTCGATTTTTAAGAAGAAAAAAAATTTTAGCAAAAAAGTCCCAAATGTCGTCTATCGTGTGTCACCCGATTATCAAAAACGGAATCGCGACGGACGCCCGTATCAAAAAGCAACGCCCACCGCCACTGGTGGTCGCCAGGCCTAGAGATTTGGTACAAAATTGAATTTACTAGAAAAATTGATTTTTAGGCCTAATTAGCCCAATTAAACGTTTTCTAATTGCAGATCCAAGAAGCATGCGAACGTCTGGTGCTCAGCGATCAGCAGTTGCGGCGAATTATGGTGCTCATGGAGAAAAGTATGGAGCAGGGGCTCTCCGGAAAGAAGGCGGCCGTTAAGATGCTGCCAACGTATGTGGATGCGGTGCCGAATGGGACAGAGGTAATTAGCGGAGTTAATTGGTCGAGTTAATTGGCCAATTAGGCGATTTTTCGCTCCTAGGGACATCCGGACACACMGACCCATGTATATAGCGAAAATGGCTTTTGAATAAAGCCATTTTTCGCTCCCATGGGCATCTGGACACACAGAGCTATGGATAGAGCAAAATTAGCGATTTTTTTTTTGCAGAAAGGCGACTTCCTTGCTCTGGATTTGGGCGGTACGAACTTCCGAGTGCTTCACATCAAGCTCGAGGGAAAAGAGACAAAAATGACGGGAAAGATTTTCCGCGTCCCCGAGAGCATCATGCGAGGAACTGGAGAAGCGGTAAGAGAGCGATTTAGAGCAATGTTAACCAGAAAAATTGGTTTTGGAGCAGTTTTTGAGCCTAGAGAACTCAAAATTAGAGATTTTTTAACCCCTCAAACGAACATCCGGACATCAGGATGCACAGAAAAAGTTGATTTTGAGCCATTTTTAGCTCAAAATCTGGAATTTTTGATGTTGGACAAACAGATGGACAGAAATTTGAGAAAAATTGATTTCTAGGCATTTCCAACCCCAGAAATGCGATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATTAGCGGAGTTAATTGGTC</pcr_primer_p1>
		<pcr_primer_p2>GAGCTTGATGTGAAGCACTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAATTAGCGGAGTTAATTGGTCGAGTTAATTGGCCAATTAGGCGATTTTTCGCTCCTAGGGACATCCGGACACACCGACCCATGTATATAGCGAAAATGGCTTTTGAATAAAGCCATTTTTCGCTCCCATGGGCATCTGGACACACAGAGCTATGGATAGAGCAAAATTAGCGATTTTTTTTTTGCAGAAAGGCGACTTCCTTGCTCTGGATTTGGGCGGTACGAACTTCCGAGTGCTTCACATCAAGCTC</canonical_amplicon>
		<polymorphic_amplicon>TAATTAGCGGAGTTAATTGGTCGAGTTAATTGGCCAATTAGGCGATTTTTCGCTCCTAGGGACATCCGGACACACMGACCCATGTATATAGCGAAAATGGCTTTTGAATAAAGCCATTTTTCGCTCCCATGGGCATCTGGACACACAGAGCTATGGATAGAGCAAAATTAGCGATTTTTTTTTTGCAGAAAGGCGACTTCCTTGCTCTGGATTTGGGCGGTACGAACTTCCGAGTGCTTCACATCAAGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32542</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>97408</contig_pos>
        <strand>+</strand>
        <context>TGGACACACA[C/G]AGCTATGGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGGCTTTTGAATAAAGCCATTTTTCGCTCCCATGGGCATCTGGACACACA</left_flank>
        <right_flank>AGCTATGGATAGAGCAAAATTAGCGATTTTTTTTTTGCAGAAAGGCGACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAAAGTCCCAAATGTCGTCTATCGTGTGTCACCCGATTATCAAAAACGGAATCGCGACGGACGCCCGTATCAAAAAGCAACGCCCACCGCCACTGGTGGTCGCCAGGCCTAGAGATTTGGTACAAAATTGAATTTACTAGAAAAATTGATTTTTAGGCCTAATTAGCCCAATTAAACGTTTTCTAATTGCAGATCCAAGAAGCATGCGAACGTCTGGTGCTCAGCGATCAGCAGTTGCGGCGAATTATGGTGCTCATGGAGAAAAGTATGGAGCAGGGGCTCTCCGGAAAGAAGGCGGCCGTTAAGATGCTGCCAACGTATGTGGATGCGGTGCCGAATGGGACAGAGGTAATTAGCGGAGTTAATTGGTCGAGTTAATTGGCCAATTAGGCGATTTTTCGCTCCTAGGGACATCCGGACACACCGACCCATGTATATAGCGAAAATGGCTTTTGAATAAAGCCATTTTTCGCTCCCATGGGCATCTGGACACACAGAGCTATGGATAGAGCAAAATTAGCGATTTTTTTTTTGCAGAAAGGCGACTTCCTTGCTCTGGATTTGGGCGGTACGAACTTCCGAGTGCTTCACATCAAGCTCGAGGGAAAAGAGACAAAAATGACGGGAAAGATTTTCCGCGTCCCCGAGAGCATCATGCGAGGAACTGGAGAAGCGGTAAGAGAGCGATTTAGAGCAATGTTAACCAGAAAAATTGGTTTTGGAGCAGTTTTTGAGCCTAGAGAACTCAAAATTAGAGATTTTTTAACCCCTCAAACGAACATCCGGACATCAGGATGCACAGAAAAAGTTGATTTTGAGCCATTTTTAGCTCAAAATCTGGAATTTTTGATGTTGGACAAACAGATGGACAGAAATTTGAGAAAAATTGATTTCTAGGCATTTCCAACCCCAGAAATGCGATTTTCAGCCTAATTTTGGTCTGTTTTCAGCTCTTCGACCACATTGCCGACTGTATGGCCAAATTCATGGAGGAGAA</canonical>
            <polymorphic>CAAAAAAGTCCCAAATGTCGTCTATCGTGTGTCACCCGATTATCAAAAACGGAATCGCGACGGACGCCCGTATCAAAAAGCAACGCCCACCGCCACTGGTGGTCGCCAGGCCTAGAGATTTGGTACAAAATTGAATTTACTAGAAAAATTGATTTTTAGGCCTAATTAGCCCAATTAAACGTTTTCTAATTGCAGATCCAAGAAGCATGCGAACGTCTGGTGCTCAGCGATCAGCAGTTGCGGCGAATTATGGTGCTCATGGAGAAAAGTATGGAGCAGGGGCTCTCCGGAAAGAAGGCGGCCGTTAAGATGCTGCCAACGTATGTGGATGCGGTGCCGAATGGGACAGAGGTAATTAGCGGAGTTAATTGGTCGAGTTAATTGGCCAATTAGGCGATTTTTCGCTCCTAGGGACATCCGGACACACCGACCCATGTATATAGCGAAAATGGCTTTTGAATAAAGCCATTTTTCGCTCCCATGGGCATCTGGACACACASAGCTATGGATAGAGCAAAATTAGCGATTTTTTTTTTGCAGAAAGGCGACTTCCTTGCTCTGGATTTGGGCGGTACGAACTTCCGAGTGCTTCACATCAAGCTCGAGGGAAAAGAGACAAAAATGACGGGAAAGATTTTCCGCGTCCCCGAGAGCATCATGCGAGGAACTGGAGAAGCGGTAAGAGAGCGATTTAGAGCAATGTTAACCAGAAAAATTGGTTTTGGAGCAGTTTTTGAGCCTAGAGAACTCAAAATTAGAGATTTTTTAACCCCTCAAACGAACATCCGGACATCAGGATGCACAGAAAAAGTTGATTTTGAGCCATTTTTAGCTCAAAATCTGGAATTTTTGATGTTGGACAAACAGATGGACAGAAATTTGAGAAAAATTGATTTCTAGGCATTTCCAACCCCAGAAATGCGATTTTCAGCCTAATTTTGGTCTGTTTTCAGCTCTTCGACCACATTGCCGACTGTATGGCCAAATTCATGGAGGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATTAGCGGAGTTAATTGGTC</pcr_primer_p1>
		<pcr_primer_p2>GAGCTTGATGTGAAGCACTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAATTAGCGGAGTTAATTGGTCGAGTTAATTGGCCAATTAGGCGATTTTTCGCTCCTAGGGACATCCGGACACACCGACCCATGTATATAGCGAAAATGGCTTTTGAATAAAGCCATTTTTCGCTCCCATGGGCATCTGGACACACAGAGCTATGGATAGAGCAAAATTAGCGATTTTTTTTTTGCAGAAAGGCGACTTCCTTGCTCTGGATTTGGGCGGTACGAACTTCCGAGTGCTTCACATCAAGCTC</canonical_amplicon>
		<polymorphic_amplicon>TAATTAGCGGAGTTAATTGGTCGAGTTAATTGGCCAATTAGGCGATTTTTCGCTCCTAGGGACATCCGGACACACCGACCCATGTATATAGCGAAAATGGCTTTTGAATAAAGCCATTTTTCGCTCCCATGGGCATCTGGACACACASAGCTATGGATAGAGCAAAATTAGCGATTTTTTTTTTGCAGAAAGGCGACTTCCTTGCTCTGGATTTGGGCGGTACGAACTTCCGAGTGCTTCACATCAAGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32543</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>102230</contig_pos>
        <strand></strand>
        <context>CACCCAATTT[C/T]AATTGAAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTCCACGTGTCAATCTCCGAGACCTTCAAATCTATTTAACACCCAATTT</left_flank>
        <right_flank>AATTGAAAAGAGAAGTTTTTCGAAGAAATTTGAAAAAAAATTTTTTTTTG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAATGCTGAAATTTGAGGCACGTAGAAAATTGCTCAAGAAGCCTAAGCTCAATTATCTCTACTCCCGTTGGAGATAGCAAAAATTTGTCAACTTTGATAAAATGTTAAGCATAACATCATTCACATTTTATCAGTTCACATACTTTTGATATCTTGCATAGGAGCCGAGATAATTGAGCTTGAAGATCAAGCTAACTGATCAAAGTTCACATCACTTTCACACTTTTTTCTGTCATTGGAAACAATCCGCAAAACAAACATTCTGTAATTTTTGAGATTTCCTGTCATATGTATCTACGTTTCTCAGGAGGACGAGAAAAGTTGAACGTAGAGAACATTACACAAAAAAGAAGAAAAAGAAGAAGGACCTTGTGATTTCAACGAGTAGGTCAAAAGATCTCTTTCGCGACCAACAACAATCAGATGTTTGTGTTTTTGATGGTCCCGCCTCCACGTGTCAATCTCCGAGACCTTCAAATCTATTTAACACCCAATTTCAATTGAAAAGAGAAGTTTTTCGAAGAAATTTGAAAAAAAATTTTTTTTTGAAAAGAAGGATTTTGGAAAGAGAAGATTGGAGAAAAACAATGGTCGAGGTGAGTTTTCGATTTTTGAATTTTAGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCGATTTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAGTTTCTGAATTTCTGAATTTCTGAGTTTCTGAATTTCTGAATTTCTGAATTTCCGATTTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCGGAATTTCTGAATTTTAGAATTTTTTTTTAGAATTTCTGATATTCTGATATTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCATGATTTTCTGAATTTCCGAGTTTCCTGGAATTTTAGAATTTTAAGAAATTTCTGAAATCTCTTTTTTCTTGAAATTTACCTTTTACCAGAATTTGGGAAATTTCTAGA</canonical>
            <polymorphic>AATAATGCTGAAATTTGAGGCACGTAGAAAATTGCTCAAGAAGCCTAAGCTCAATTATCTCTACTCCCGTTGGAGATAGCAAAAATTTGTCAACTTTGATAAAATGTTAAGCATAACATCATTCACATTTTATCAGTTCACATACTTTTGATATCTTGCATAGGAGCCGAGATAATTGAGCTTGAAGATCAAGCTAACTGATCAAAGTTCACATCACTTTCACACTTTTTTCTGTCATTGGAAACAATCCGCAAAACAAACATTCTGTAATTTTTGAGATTTCCTGTCATATGTATCTACGTTTCTCAGGAGGACGAGAAAAGTTGAACGTAGAGAACATTACACAAAAAAGAAGAAAAAGAAGAAGGACCTTGTGATTTCAACGAGTAGGTCAAAAGATCTCTTTCGCGACCAACAACAATCAGATGTTTGTGTTTTTGATGGTCCCGCCTCCACGTGTCAATCTCCGAGACCTTCAAATCTATTTAACACCCAATTTYAATTGAAAAGAGAAGTTTTTCGAAGAAATTTGAAAAAAAATTTTTTTTTGAAAAGAAGGATTTTGGAAAGAGAAGATTGGAGAAAAACAATGGTCGAGGTGAGTTTTCGATTTTTGAATTTTAGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCGATTTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAGTTTCTGAATTTCTGAATTTCTGAGTTTCTGAATTTCTGAATTTCTGAATTTCCGATTTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCGGAATTTCTGAATTTTAGAATTTTTTTTTAGAATTTCTGATATTCTGATATTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCATGATTTTCTGAATTTCCGAGTTTCCTGGAATTTTAGAATTTTAAGAAATTTCTGAAATCTCTTTTTTCTTGAAATTTACCTTTTACCAGAATTTGGGAAATTTCTAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAACGTAGAGAACATTACACA</pcr_primer_p1>
		<pcr_primer_p2>CTCTTTCCAAAATCCTTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGAACGTAGAGAACATTACACAAAAAAGAAGAAAAAGAAGAAGGACCTTGTGATTTCAACGAGTAGGTCAAAAGATCTCTTTCGCGACCAACAACAATCAGATGTTTGTGTTTTTGATGGTCCCGCCTCCACGTGTCAATCTCCGAGACCTTCAAATCTATTTAACACCCAATTTCAATTGAAAAGAGAAGTTTTTCGAAGAAATTTGAAAAAAAATTTTTTTTTGAAAAGAAGGATTTTGGAAAGAG</canonical_amplicon>
		<polymorphic_amplicon>TTGAACGTAGAGAACATTACACAAAAAAGAAGAAAAAGAAGAAGGACCTTGTGATTTCAACGAGTAGGTCAAAAGATCTCTTTCGCGACCAACAACAATCAGATGTTTGTGTTTTTGATGGTCCCGCCTCCACGTGTCAATCTCCGAGACCTTCAAATCTATTTAACACCCAATTTYAATTGAAAAGAGAAGTTTTTCGAAGAAATTTGAAAAAAAATTTTTTTTTGAAAAGAAGGATTTTGGAAAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32544</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>102367</contig_pos>
        <strand></strand>
        <context>tttctgaatt[T/A]ctgaatttct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ACAATGGTCGAGGTGAGTTTTCGATTTTTGAATTTTAGAATTTCTGAATT</left_flank>
        <right_flank>CTGAATTTCTGAATTTCTGAATTTCTGAATTTCCGATTTTTTGAATTTCT</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACATACTTTTGATATCTTGCATAGGAGCCGAGATAATTGAGCTTGAAGATCAAGCTAACTGATCAAAGTTCACATCACTTTCACACTTTTTTCTGTCATTGGAAACAATCCGCAAAACAAACATTCTGTAATTTTTGAGATTTCCTGTCATATGTATCTACGTTTCTCAGGAGGACGAGAAAAGTTGAACGTAGAGAACATTACACAAAAAAGAAGAAAAAGAAGAAGGACCTTGTGATTTCAACGAGTAGGTCAAAAGATCTCTTTCGCGACCAACAACAATCAGATGTTTGTGTTTTTGATGGTCCCGCCTCCACGTGTCAATCTCCGAGACCTTCAAATCTATTTAACACCCAATTTCAATTGAAAAGAGAAGTTTTTCGAAGAAATTTGAAAAAAAATTTTTTTTTGAAAAGAAGGATTTTGGAAAGAGAAGATTGGAGAAAAACAATGGTCGAGGTGAGTTTTCGATTTTTGAATTTTAGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCGATTTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAGTTTCTGAATTTCTGAATTTCTGAGTTTCTGAATTTCTGAATTTCTGAATTTCCGATTTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCGGAATTTCTGAATTTTAGAATTTTTTTTTAGAATTTCTGATATTCTGATATTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCATGATTTTCTGAATTTCCGAGTTTCCTGGAATTTTAGAATTTTAAGAAATTTCTGAAATCTCTTTTTTCTTGAAATTTACCTTTTACCAGAATTTGGGAAATTTCTAGAAATTAACCTTTTTTAGTTCCGGGATTTTCTGGGATTTTCTAAAACCTTAAAAAATCAAAATTACCGATTTTTCTTATCCTAAAAAAAATTCTAAAACTTCAAAACTCTCAGATAATACACAGTATTATCTGAGAGTT</canonical>
            <polymorphic>TCACATACTTTTGATATCTTGCATAGGAGCCGAGATAATTGAGCTTGAAGATCAAGCTAACTGATCAAAGTTCACATCACTTTCACACTTTTTTCTGTCATTGGAAACAATCCGCAAAACAAACATTCTGTAATTTTTGAGATTTCCTGTCATATGTATCTACGTTTCTCAGGAGGACGAGAAAAGTTGAACGTAGAGAACATTACACAAAAAAGAAGAAAAAGAAGAAGGACCTTGTGATTTCAACGAGTAGGTCAAAAGATCTCTTTCGCGACCAACAACAATCAGATGTTTGTGTTTTTGATGGTCCCGCCTCCACGTGTCAATCTCCGAGACCTTCAAATCTATTTAACACCCAATTTCAATTGAAAAGAGAAGTTTTTCGAAGAAATTTGAAAAAAAATTTTTTTTTGAAAAGAAGGATTTTGGAAAGAGAAGATTGGAGAAAAACAATGGTCGAGGTGAGTTTTCGATTTTTGAATTTTAGAATTTCTGAATTWCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCGATTTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAGTTTCTGAATTTCTGAATTTCTGAGTTTCTGAATTTCTGAATTTCTGAATTTCCGATTTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCGGAATTTCTGAATTTTAGAATTTTTTTTTAGAATTTCTGATATTCTGATATTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCATGATTTTCTGAATTTCCGAGTTTCCTGGAATTTTAGAATTTTAAGAAATTTCTGAAATCTCTTTTTTCTTGAAATTTACCTTTTACCAGAATTTGGGAAATTTCTAGAAATTAACCTTTTTTAGTTCCGGGATTTTCTGGGATTTTCTAAAACCTTAAAAAATCAAAATTACCGATTTTTCTTATCCTAAAAAAAATTCTAAAACTTCAAAACTCTCAGATAATACACAGTATTATCTGAGAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>389 96 78 51 26 24 18 17 17 16 16 16 16 13 12 10 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>389 96 78 51 26 24 18 17 17 16 16 16 16 16 13 12 10 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>287 165 163 44 36 29 20 17 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>287 165 163 44 36 29 20 17 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAAAACAATGGTCGAGGT</pcr_primer_p1>
		<pcr_primer_p2>CTGGTAAAAGGTAAATTTCAAGA</pcr_primer_p2>
		<pcr_amplicon_size>401</pcr_amplicon_size>
		<canonical_amplicon>AGAAAAACAATGGTCGAGGTGAGTTTTCGATTTTTGAATTTTAGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCGATTTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAGTTTCTGAATTTCTGAATTTCTGAGTTTCTGAATTTCTGAATTTCTGAATTTCCGATTTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCGGAATTTCTGAATTTTAGAATTTTTTTTTAGAATTTCTGATATTCTGATATTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCATGATTTTCTGAATTTCCGAGTTTCCTGGAATTTTAGAATTTTAAGAAATTTCTGAAATCTCTTTTTTCTTGAAATTTACCTTTTACCAG</canonical_amplicon>
		<polymorphic_amplicon>AGAAAAACAATGGTCGAGGTGAGTTTTCGATTTTTGAATTTTAGAATTTCTGAATTWCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCGATTTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAGTTTCTGAATTTCTGAATTTCTGAGTTTCTGAATTTCTGAATTTCTGAATTTCCGATTTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCGGAATTTCTGAATTTTAGAATTTTTTTTTAGAATTTCTGATATTCTGATATTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCATGATTTTCTGAATTTCCGAGTTTCCTGGAATTTTAGAATTTTAAGAAATTTCTGAAATCTCTTTTTTCTTGAAATTTACCTTTTACCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32545</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>106022</contig_pos>
        <strand></strand>
        <context>gaaaagttcg[A/G]gcatcaacaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGTCTCCAGAAGACTTCAAAAATCAGAATTTCGAAAAAAGAAAAGTTCG</left_flank>
        <right_flank>GCATCAACAAAGACACACTTCTGATCTATCTGTCAGGTTTCAGCTCAATC</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCACTCATGTTTAATGTTATAACTTTTGAACCGTTAAAGGTATCAAACTAGTTTTTTGAAACGCGAATTTGGGACCACAAATTACATACAATTGACAATTTCTGTAACGATATCTTGAAAACTGTCCGAGTTATCTGAGAAAGTCTGGAAAAATGCCATTTGCAACCGTTGCAGATTTGTACGGCCACTTCAAAAATCGGTAGATCATGACCTCCAGGGAAGACGGAGGAGTCTGATTTTGATTATATATTCCTAACATCACTGATAAAACCTGTTTTATTTTGTGTGCTCTTTTTAAGTCACTTTGACATTATGCTCTTTTGCTGATTGATACTGAAAAAGCTTGAATAGGCGCGTTTAGATAATCTGGAAGGATTGAAAAAGTACCTCCTGGCCAACGTGTGTGGGATTTCCTCTCGCCGCGCTTTACTACGGTGAAATCAAGGAACCGTCTCCAGAAGACTTCAAAAATCAGAATTTCGAAAAAAGAAAAGTTCGAGCATCAACAAAGACACACTTCTGATCTATCTGTCAGGTTTCAGCTCAATCGGTTAACTTTGAAGGGGTGCAAAGGCACGCTACATACATGCGCACATACAGAATTTGGTGAATGTTACACTTTCTGATCTGGAACCTGGGAAAACCAGCAAAAAAGATTGCATCAGCAGGTGGTGTTATATGTATTCAAAGGTGATTCGCGAACAATCCCGTTACGGACGCTCCGCGTTCGCGCGCGGTTGAAATAGGAACCGCATACGGACCGTACGCGAACCGTTTTTAATAAATAGTTGTACATTATTCGGATTGATCCGTATCCTGTCCGTTCGCGAGCTCCGTATCCGATCCGATTGCGAATCATGACCAAACGGACAGGATACGGATCAATCCGAATAATGTACTGCTATTTACTGAAAACGGTTCGCGTGCGGTCCGTATGCGGTTCCTATTTCAAACGCGCGCGAACGCGAAGCGTCCGTAACGGACCCGTTCGCATTTTAT</canonical>
            <polymorphic>GCCACTCATGTTTAATGTTATAACTTTTGAACCGTTAAAGGTATCAAACTAGTTTTTTGAAACGCGAATTTGGGACCACAAATTACATACAATTGACAATTTCTGTAACGATATCTTGAAAACTGTCCGAGTTATCTGAGAAAGTCTGGAAAAATGCCATTTGCAACCGTTGCAGATTTGTACGGCCACTTCAAAAATCGGTAGATCATGACCTCCAGGGAAGACGGAGGAGTCTGATTTTGATTATATATTCCTAACATCACTGATAAAACCTGTTTTATTTTGTGTGCTCTTTTTAAGTCACTTTGACATTATGCTCTTTTGCTGATTGATACTGAAAAAGCTTGAATAGGCGCGTTTAGATAATCTGGAAGGATTGAAAAAGTACCTCCTGGCCAACGTGTGTGGGATTTCCTCTCGCCGCGCTTTACTACGGTGAAATCAAGGAACCGTCTCCAGAAGACTTCAAAAATCAGAATTTCGAAAAAAGAAAAGTTCGRGCATCAACAAAGACACACTTCTGATCTATCTGTCAGGTTTCAGCTCAATCGGTTAACTTTGAAGGGGTGCAAAGGCACGCTACATACATGCGCACATACAGAATTTGGTGAATGTTACACTTTCTGATCTGGAACCTGGGAAAACCAGCAAAAAAGATTGCATCAGCAGGTGGTGTTATATGTATTCAAAGGTGATTCGCGAACAATCCCGTTACGGACGCTCCGCGTTCGCGCGCGGTTGAAATAGGAACCGCATACGGACCGTACGCGAACCGTTTTTAATAAATAGTTGTACATTATTCGGATTGATCCGTATCCTGTCCGTTCGCGAGCTCCGTATCCGATCCGATTGCGAATCATGACCAAACGGACAGGATACGGATCAATCCGAATAATGTACTGCTATTTACTGAAAACGGTTCGCGTGCGGTCCGTATGCGGTTCCTATTTCAAACGCGCGCGAACGCGAAGCGTCCGTAACGGACCCGTTCGCATTTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 482 16</canonical_bands>
                <polymorphic_bands>518 482</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCTGGTCATCTCAGAGTGC</pcr_primer_p1>
		<pcr_primer_p2>TTGAATACATATAACACCACCTG</pcr_primer_p2>
		<pcr_amplicon_size>762</pcr_amplicon_size>
		<canonical_amplicon>GAGCATCAACAAAGACACACTTCTGATCTATCTGTCAGGTTTCAGCTCAATCGGTTAACTTTGAAGGGGTGCAAAGGCACGCTACATACATGCGCACATACAGAATTTGGTGAATGTTACACTTTCTGATCTGGAACCTGGGAAAACCAGCAAAAAAGATTGCATCAGCAGGTGGTGTTATATGTATTCAA</canonical_amplicon>
		<polymorphic_amplicon>GRGCATCAACAAAGACACACTTCTGATCTATCTGTCAGGTTTCAGCTCAATCGGTTAACTTTGAAGGGGTGCAAAGGCACGCTACATACATGCGCACATACAGAATTTGGTGAATGTTACACTTTCTGATCTGGAACCTGGGAAAACCAGCAAAAAAGATTGCATCAGCAGGTGGTGTTATATGTATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32546</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>106035</contig_pos>
        <strand></strand>
        <context>atcaacaaag[A/G]cacrcttctg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTTCAAAAATCAGAATTTCGAAAAAAGAAAAGTTCGAGCATCAACAAAG</left_flank>
        <right_flank>CACACTTCTGATCTATCTGTCAGGTTTCAGCTCAATCGGTTAACTTTGAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGTTATAACTTTTGAACCGTTAAAGGTATCAAACTAGTTTTTTGAAACGCGAATTTGGGACCACAAATTACATACAATTGACAATTTCTGTAACGATATCTTGAAAACTGTCCGAGTTATCTGAGAAAGTCTGGAAAAATGCCATTTGCAACCGTTGCAGATTTGTACGGCCACTTCAAAAATCGGTAGATCATGACCTCCAGGGAAGACGGAGGAGTCTGATTTTGATTATATATTCCTAACATCACTGATAAAACCTGTTTTATTTTGTGTGCTCTTTTTAAGTCACTTTGACATTATGCTCTTTTGCTGATTGATACTGAAAAAGCTTGAATAGGCGCGTTTAGATAATCTGGAAGGATTGAAAAAGTACCTCCTGGCCAACGTGTGTGGGATTTCCTCTCGCCGCGCTTTACTACGGTGAAATCAAGGAACCGTCTCCAGAAGACTTCAAAAATCAGAATTTCGAAAAAAGAAAAGTTCGAGCATCAACAAAGACACACTTCTGATCTATCTGTCAGGTTTCAGCTCAATCGGTTAACTTTGAAGGGGTGCAAAGGCACGCTACATACATGCGCACATACAGAATTTGGTGAATGTTACACTTTCTGATCTGGAACCTGGGAAAACCAGCAAAAAAGATTGCATCAGCAGGTGGTGTTATATGTATTCAAAGGTGATTCGCGAACAATCCCGTTACGGACGCTCCGCGTTCGCGCGCGGTTGAAATAGGAACCGCATACGGACCGTACGCGAACCGTTTTTAATAAATAGTTGTACATTATTCGGATTGATCCGTATCCTGTCCGTTCGCGAGCTCCGTATCCGATCCGATTGCGAATCATGACCAAACGGACAGGATACGGATCAATCCGAATAATGTACTGCTATTTACTGAAAACGGTTCGCGTGCGGTCCGTATGCGGTTCCTATTTCAAACGCGCGCGAACGCGAAGCGTCCGTAACGGACCCGTTCGCATTTTATCTGTGTTACAATT</canonical>
            <polymorphic>AATGTTATAACTTTTGAACCGTTAAAGGTATCAAACTAGTTTTTTGAAACGCGAATTTGGGACCACAAATTACATACAATTGACAATTTCTGTAACGATATCTTGAAAACTGTCCGAGTTATCTGAGAAAGTCTGGAAAAATGCCATTTGCAACCGTTGCAGATTTGTACGGCCACTTCAAAAATCGGTAGATCATGACCTCCAGGGAAGACGGAGGAGTCTGATTTTGATTATATATTCCTAACATCACTGATAAAACCTGTTTTATTTTGTGTGCTCTTTTTAAGTCACTTTGACATTATGCTCTTTTGCTGATTGATACTGAAAAAGCTTGAATAGGCGCGTTTAGATAATCTGGAAGGATTGAAAAAGTACCTCCTGGCCAACGTGTGTGGGATTTCCTCTCGCCGCGCTTTACTACGGTGAAATCAAGGAACCGTCTCCAGAAGACTTCAAAAATCAGAATTTCGAAAAAAGAAAAGTTCGAGCATCAACAAAGRCACACTTCTGATCTATCTGTCAGGTTTCAGCTCAATCGGTTAACTTTGAAGGGGTGCAAAGGCACGCTACATACATGCGCACATACAGAATTTGGTGAATGTTACACTTTCTGATCTGGAACCTGGGAAAACCAGCAAAAAAGATTGCATCAGCAGGTGGTGTTATATGTATTCAAAGGTGATTCGCGAACAATCCCGTTACGGACGCTCCGCGTTCGCGCGCGGTTGAAATAGGAACCGCATACGGACCGTACGCGAACCGTTTTTAATAAATAGTTGTACATTATTCGGATTGATCCGTATCCTGTCCGTTCGCGAGCTCCGTATCCGATCCGATTGCGAATCATGACCAAACGGACAGGATACGGATCAATCCGAATAATGTACTGCTATTTACTGAAAACGGTTCGCGTGCGGTCCGTATGCGGTTCCTATTTCAAACGCGCGCGAACGCGAAGCGTCCGTAACGGACCCGTTCGCATTTTATCTGTGTTACAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCTGGTCATCTCAGAGTGC</pcr_primer_p1>
		<pcr_primer_p2>TTGAATACATATAACACCACCTG</pcr_primer_p2>
		<pcr_amplicon_size>762</pcr_amplicon_size>
		<canonical_amplicon>GACACACTTCTGATCTATCTGTCAGGTTTCAGCTCAATCGGTTAACTTTGAAGGGGTGCAAAGGCACGCTACATACATGCGCACATACAGAATTTGGTGAATGTTACACTTTCTGATCTGGAACCTGGGAAAACCAGCAAAAAAGATTGCATCAGCAGGTGGTGTTATATGTATTCAA</canonical_amplicon>
		<polymorphic_amplicon>GRCACACTTCTGATCTATCTGTCAGGTTTCAGCTCAATCGGTTAACTTTGAAGGGGTGCAAAGGCACGCTACATACATGCGCACATACAGAATTTGGTGAATGTTACACTTTCTGATCTGGAACCTGGGAAAACCAGCAAAAAAGATTGCATCAGCAGGTGGTGTTATATGTATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32547</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>106039</contig_pos>
        <strand></strand>
        <context>acaaagrcac[A/G]cttctgatct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAAAATCAGAATTTCGAAAAAAGAAAAGTTCGAGCATCAACAAAGACAC</left_flank>
        <right_flank>CTTCTGATCTATCTGTCAGGTTTCAGCTCAATCGGTTAACTTTGAAGGGG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATAACTTTTGAACCGTTAAAGGTATCAAACTAGTTTTTTGAAACGCGAATTTGGGACCACAAATTACATACAATTGACAATTTCTGTAACGATATCTTGAAAACTGTCCGAGTTATCTGAGAAAGTCTGGAAAAATGCCATTTGCAACCGTTGCAGATTTGTACGGCCACTTCAAAAATCGGTAGATCATGACCTCCAGGGAAGACGGAGGAGTCTGATTTTGATTATATATTCCTAACATCACTGATAAAACCTGTTTTATTTTGTGTGCTCTTTTTAAGTCACTTTGACATTATGCTCTTTTGCTGATTGATACTGAAAAAGCTTGAATAGGCGCGTTTAGATAATCTGGAAGGATTGAAAAAGTACCTCCTGGCCAACGTGTGTGGGATTTCCTCTCGCCGCGCTTTACTACGGTGAAATCAAGGAACCGTCTCCAGAAGACTTCAAAAATCAGAATTTCGAAAAAAGAAAAGTTCGAGCATCAACAAAGACACACTTCTGATCTATCTGTCAGGTTTCAGCTCAATCGGTTAACTTTGAAGGGGTGCAAAGGCACGCTACATACATGCGCACATACAGAATTTGGTGAATGTTACACTTTCTGATCTGGAACCTGGGAAAACCAGCAAAAAAGATTGCATCAGCAGGTGGTGTTATATGTATTCAAAGGTGATTCGCGAACAATCCCGTTACGGACGCTCCGCGTTCGCGCGCGGTTGAAATAGGAACCGCATACGGACCGTACGCGAACCGTTTTTAATAAATAGTTGTACATTATTCGGATTGATCCGTATCCTGTCCGTTCGCGAGCTCCGTATCCGATCCGATTGCGAATCATGACCAAACGGACAGGATACGGATCAATCCGAATAATGTACTGCTATTTACTGAAAACGGTTCGCGTGCGGTCCGTATGCGGTTCCTATTTCAAACGCGCGCGAACGCGAAGCGTCCGTAACGGACCCGTTCGCATTTTATCTGTGTTACAATTTCAC</canonical>
            <polymorphic>TTATAACTTTTGAACCGTTAAAGGTATCAAACTAGTTTTTTGAAACGCGAATTTGGGACCACAAATTACATACAATTGACAATTTCTGTAACGATATCTTGAAAACTGTCCGAGTTATCTGAGAAAGTCTGGAAAAATGCCATTTGCAACCGTTGCAGATTTGTACGGCCACTTCAAAAATCGGTAGATCATGACCTCCAGGGAAGACGGAGGAGTCTGATTTTGATTATATATTCCTAACATCACTGATAAAACCTGTTTTATTTTGTGTGCTCTTTTTAAGTCACTTTGACATTATGCTCTTTTGCTGATTGATACTGAAAAAGCTTGAATAGGCGCGTTTAGATAATCTGGAAGGATTGAAAAAGTACCTCCTGGCCAACGTGTGTGGGATTTCCTCTCGCCGCGCTTTACTACGGTGAAATCAAGGAACCGTCTCCAGAAGACTTCAAAAATCAGAATTTCGAAAAAAGAAAAGTTCGAGCATCAACAAAGACACRCTTCTGATCTATCTGTCAGGTTTCAGCTCAATCGGTTAACTTTGAAGGGGTGCAAAGGCACGCTACATACATGCGCACATACAGAATTTGGTGAATGTTACACTTTCTGATCTGGAACCTGGGAAAACCAGCAAAAAAGATTGCATCAGCAGGTGGTGTTATATGTATTCAAAGGTGATTCGCGAACAATCCCGTTACGGACGCTCCGCGTTCGCGCGCGGTTGAAATAGGAACCGCATACGGACCGTACGCGAACCGTTTTTAATAAATAGTTGTACATTATTCGGATTGATCCGTATCCTGTCCGTTCGCGAGCTCCGTATCCGATCCGATTGCGAATCATGACCAAACGGACAGGATACGGATCAATCCGAATAATGTACTGCTATTTACTGAAAACGGTTCGCGTGCGGTCCGTATGCGGTTCCTATTTCAAACGCGCGCGAACGCGAAGCGTCCGTAACGGACCCGTTCGCATTTTATCTGTGTTACAATTTCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>233 110 100 78 77 74 61 53 52 31 25 19 17 16 14 11 9 8 3 2 2 2 2 1</canonical_bands>
                <polymorphic_bands>233 110 100 78 77 74 61 54 53 31 25 19 17 16 14 11 9 8 3 2 2 2 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCTGGTCATCTCAGAGTGC</pcr_primer_p1>
		<pcr_primer_p2>TTGAATACATATAACACCACCTG</pcr_primer_p2>
		<pcr_amplicon_size>762</pcr_amplicon_size>
		<canonical_amplicon>CACTTCTGATCTATCTGTCAGGTTTCAGCTCAATCGGTTAACTTTGAAGGGGTGCAAAGGCACGCTACATACATGCGCACATACAGAATTTGGTGAATGTTACACTTTCTGATCTGGAACCTGGGAAAACCAGCAAAAAAGATTGCATCAGCAGGTGGTGTTATATGTATTCAA</canonical_amplicon>
		<polymorphic_amplicon>CRCTTCTGATCTATCTGTCAGGTTTCAGCTCAATCGGTTAACTTTGAAGGGGTGCAAAGGCACGCTACATACATGCGCACATACAGAATTTGGTGAATGTTACACTTTCTGATCTGGAACCTGGGAAAACCAGCAAAAAAGATTGCATCAGCAGGTGGTGTTATATGTATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32548</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>106086</contig_pos>
        <strand></strand>
        <context>taactttgaa[G/T]gggtgcaaag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CACACTTCTGATCTATCTGTCAGGTTTCAGCTCAATCGGTTAACTTTGAA</left_flank>
        <right_flank>GGGTGCAAAGGCACGCTACATACATGCGCACATACAGAATTTGGTGAATG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAATTTGGGACCACAAATTACATACAATTGACAATTTCTGTAACGATATCTTGAAAACTGTCCGAGTTATCTGAGAAAGTCTGGAAAAATGCCATTTGCAACCGTTGCAGATTTGTACGGCCACTTCAAAAATCGGTAGATCATGACCTCCAGGGAAGACGGAGGAGTCTGATTTTGATTATATATTCCTAACATCACTGATAAAACCTGTTTTATTTTGTGTGCTCTTTTTAAGTCACTTTGACATTATGCTCTTTTGCTGATTGATACTGAAAAAGCTTGAATAGGCGCGTTTAGATAATCTGGAAGGATTGAAAAAGTACCTCCTGGCCAACGTGTGTGGGATTTCCTCTCGCCGCGCTTTACTACGGTGAAATCAAGGAACCGTCTCCAGAAGACTTCAAAAATCAGAATTTCGAAAAAAGAAAAGTTCGAGCATCAACAAAGACACACTTCTGATCTATCTGTCAGGTTTCAGCTCAATCGGTTAACTTTGAAGGGGTGCAAAGGCACGCTACATACATGCGCACATACAGAATTTGGTGAATGTTACACTTTCTGATCTGGAACCTGGGAAAACCAGCAAAAAAGATTGCATCAGCAGGTGGTGTTATATGTATTCAAAGGTGATTCGCGAACAATCCCGTTACGGACGCTCCGCGTTCGCGCGCGGTTGAAATAGGAACCGCATACGGACCGTACGCGAACCGTTTTTAATAAATAGTTGTACATTATTCGGATTGATCCGTATCCTGTCCGTTCGCGAGCTCCGTATCCGATCCGATTGCGAATCATGACCAAACGGACAGGATACGGATCAATCCGAATAATGTACTGCTATTTACTGAAAACGGTTCGCGTGCGGTCCGTATGCGGTTCCTATTTCAAACGCGCGCGAACGCGAAGCGTCCGTAACGGACCCGTTCGCATTTTATCTGTGTTACAATTTCACGGTATATGGGCTCAAAGTTGAAAGCTAATTTTTTGATAACTTACATT</canonical>
            <polymorphic>CGAATTTGGGACCACAAATTACATACAATTGACAATTTCTGTAACGATATCTTGAAAACTGTCCGAGTTATCTGAGAAAGTCTGGAAAAATGCCATTTGCAACCGTTGCAGATTTGTACGGCCACTTCAAAAATCGGTAGATCATGACCTCCAGGGAAGACGGAGGAGTCTGATTTTGATTATATATTCCTAACATCACTGATAAAACCTGTTTTATTTTGTGTGCTCTTTTTAAGTCACTTTGACATTATGCTCTTTTGCTGATTGATACTGAAAAAGCTTGAATAGGCGCGTTTAGATAATCTGGAAGGATTGAAAAAGTACCTCCTGGCCAACGTGTGTGGGATTTCCTCTCGCCGCGCTTTACTACGGTGAAATCAAGGAACCGTCTCCAGAAGACTTCAAAAATCAGAATTTCGAAAAAAGAAAAGTTCGAGCATCAACAAAGACACACTTCTGATCTATCTGTCAGGTTTCAGCTCAATCGGTTAACTTTGAAKGGGTGCAAAGGCACGCTACATACATGCGCACATACAGAATTTGGTGAATGTTACACTTTCTGATCTGGAACCTGGGAAAACCAGCAAAAAAGATTGCATCAGCAGGTGGTGTTATATGTATTCAAAGGTGATTCGCGAACAATCCCGTTACGGACGCTCCGCGTTCGCGCGCGGTTGAAATAGGAACCGCATACGGACCGTACGCGAACCGTTTTTAATAAATAGTTGTACATTATTCGGATTGATCCGTATCCTGTCCGTTCGCGAGCTCCGTATCCGATCCGATTGCGAATCATGACCAAACGGACAGGATACGGATCAATCCGAATAATGTACTGCTATTTACTGAAAACGGTTCGCGTGCGGTCCGTATGCGGTTCCTATTTCAAACGCGCGCGAACGCGAAGCGTCCGTAACGGACCCGTTCGCATTTTATCTGTGTTACAATTTCACGGTATATGGGCTCAAAGTTGAAAGCTAATTTTTTGATAACTTACATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCTGGTCATCTCAGAGTGC</pcr_primer_p1>
		<pcr_primer_p2>TTGAATACATATAACACCACCTG</pcr_primer_p2>
		<pcr_amplicon_size>762</pcr_amplicon_size>
		<canonical_amplicon>AGGGGTGCAAAGGCACGCTACATACATGCGCACATACAGAATTTGGTGAATGTTACACTTTCTGATCTGGAACCTGGGAAAACCAGCAAAAAAGATTGCATCAGCAGGTGGTGTTATATGTATTCAA</canonical_amplicon>
		<polymorphic_amplicon>AKGGGTGCAAAGGCACGCTACATACATGCGCACATACAGAATTTGGTGAATGTTACACTTTCTGATCTGGAACCTGGGAAAACCAGCAAAAAAGATTGCATCAGCAGGTGGTGTTATATGTATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32549</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>106175</contig_pos>
        <strand></strand>
        <context>AACCAGCAAA[A/G]AAGATTGSAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTGGTGAATGTTACACTTTCTGATCTGGAACCTGGGAAAACCAGCAAA</left_flank>
        <right_flank>AAGATTGCATCAGCAGGTGGTGTTATATGTATTCAAAGGTGATTCGCGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCCATTTGCAACCGTTGCAGATTTGTACGGCCACTTCAAAAATCGGTAGATCATGACCTCCAGGGAAGACGGAGGAGTCTGATTTTGATTATATATTCCTAACATCACTGATAAAACCTGTTTTATTTTGTGTGCTCTTTTTAAGTCACTTTGACATTATGCTCTTTTGCTGATTGATACTGAAAAAGCTTGAATAGGCGCGTTTAGATAATCTGGAAGGATTGAAAAAGTACCTCCTGGCCAACGTGTGTGGGATTTCCTCTCGCCGCGCTTTACTACGGTGAAATCAAGGAACCGTCTCCAGAAGACTTCAAAAATCAGAATTTCGAAAAAAGAAAAGTTCGAGCATCAACAAAGACACACTTCTGATCTATCTGTCAGGTTTCAGCTCAATCGGTTAACTTTGAAGGGGTGCAAAGGCACGCTACATACATGCGCACATACAGAATTTGGTGAATGTTACACTTTCTGATCTGGAACCTGGGAAAACCAGCAAAAAAGATTGCATCAGCAGGTGGTGTTATATGTATTCAAAGGTGATTCGCGAACAATCCCGTTACGGACGCTCCGCGTTCGCGCGCGGTTGAAATAGGAACCGCATACGGACCGTACGCGAACCGTTTTTAATAAATAGTTGTACATTATTCGGATTGATCCGTATCCTGTCCGTTCGCGAGCTCCGTATCCGATCCGATTGCGAATCATGACCAAACGGACAGGATACGGATCAATCCGAATAATGTACTGCTATTTACTGAAAACGGTTCGCGTGCGGTCCGTATGCGGTTCCTATTTCAAACGCGCGCGAACGCGAAGCGTCCGTAACGGACCCGTTCGCATTTTATCTGTGTTACAATTTCACGGTATATGGGCTCAAAGTTGAAAGCTAATTTTTTGATAACTTACATTTTGGGCACAATGTGTGTCGGTGGTTTCTTTCTTGGGTCGATTCGTTTCGCTCGAATCTCCTTTAGAATTCGGTTCCGTGAGAAACTACC</canonical>
            <polymorphic>ATGCCATTTGCAACCGTTGCAGATTTGTACGGCCACTTCAAAAATCGGTAGATCATGACCTCCAGGGAAGACGGAGGAGTCTGATTTTGATTATATATTCCTAACATCACTGATAAAACCTGTTTTATTTTGTGTGCTCTTTTTAAGTCACTTTGACATTATGCTCTTTTGCTGATTGATACTGAAAAAGCTTGAATAGGCGCGTTTAGATAATCTGGAAGGATTGAAAAAGTACCTCCTGGCCAACGTGTGTGGGATTTCCTCTCGCCGCGCTTTACTACGGTGAAATCAAGGAACCGTCTCCAGAAGACTTCAAAAATCAGAATTTCGAAAAAAGAAAAGTTCGAGCATCAACAAAGACACACTTCTGATCTATCTGTCAGGTTTCAGCTCAATCGGTTAACTTTGAAGGGGTGCAAAGGCACGCTACATACATGCGCACATACAGAATTTGGTGAATGTTACACTTTCTGATCTGGAACCTGGGAAAACCAGCAAARAAGATTGCATCAGCAGGTGGTGTTATATGTATTCAAAGGTGATTCGCGAACAATCCCGTTACGGACGCTCCGCGTTCGCGCGCGGTTGAAATAGGAACCGCATACGGACCGTACGCGAACCGTTTTTAATAAATAGTTGTACATTATTCGGATTGATCCGTATCCTGTCCGTTCGCGAGCTCCGTATCCGATCCGATTGCGAATCATGACCAAACGGACAGGATACGGATCAATCCGAATAATGTACTGCTATTTACTGAAAACGGTTCGCGTGCGGTCCGTATGCGGTTCCTATTTCAAACGCGCGCGAACGCGAAGCGTCCGTAACGGACCCGTTCGCATTTTATCTGTGTTACAATTTCACGGTATATGGGCTCAAAGTTGAAAGCTAATTTTTTGATAACTTACATTTTGGGCACAATGTGTGTCGGTGGTTTCTTTCTTGGGTCGATTCGTTTCGCTCGAATCTCCTTTAGAATTCGGTTCCGTGAGAAACTACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCTGGTCATCTCAGAGTGC</pcr_primer_p1>
		<pcr_primer_p2>TATGCGGTTCCTATTTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>830</pcr_amplicon_size>
		<canonical_amplicon>AAAAGATTGCATCAGCAGGTGGTGTTATATGTATTCAAAGGTGATTCGCGAACAATCCCGTTACGGACGCTCCGCGTTCGCGCGCGGTTGAAATAGGAACCGCATA</canonical_amplicon>
		<polymorphic_amplicon>ARAAGATTGCATCAGCAGGTGGTGTTATATGTATTCAAAGGTGATTCGCGAACAATCCCGTTACGGACGCTCCGCGTTCGCGCGCGGTTGAAATAGGAACCGCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32550</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>106183</contig_pos>
        <strand></strand>
        <context>AARAAGATTG[C/G]ATCAGCAGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATGTTACACTTTCTGATCTGGAACCTGGGAAAACCAGCAAAAAAGATTG</left_flank>
        <right_flank>ATCAGCAGGTGGTGTTATATGTATTCAAAGGTGATTCGCGAACAATCCCG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCAACCGTTGCAGATTTGTACGGCCACTTCAAAAATCGGTAGATCATGACCTCCAGGGAAGACGGAGGAGTCTGATTTTGATTATATATTCCTAACATCACTGATAAAACCTGTTTTATTTTGTGTGCTCTTTTTAAGTCACTTTGACATTATGCTCTTTTGCTGATTGATACTGAAAAAGCTTGAATAGGCGCGTTTAGATAATCTGGAAGGATTGAAAAAGTACCTCCTGGCCAACGTGTGTGGGATTTCCTCTCGCCGCGCTTTACTACGGTGAAATCAAGGAACCGTCTCCAGAAGACTTCAAAAATCAGAATTTCGAAAAAAGAAAAGTTCGAGCATCAACAAAGACACACTTCTGATCTATCTGTCAGGTTTCAGCTCAATCGGTTAACTTTGAAGGGGTGCAAAGGCACGCTACATACATGCGCACATACAGAATTTGGTGAATGTTACACTTTCTGATCTGGAACCTGGGAAAACCAGCAAAAAAGATTGCATCAGCAGGTGGTGTTATATGTATTCAAAGGTGATTCGCGAACAATCCCGTTACGGACGCTCCGCGTTCGCGCGCGGTTGAAATAGGAACCGCATACGGACCGTACGCGAACCGTTTTTAATAAATAGTTGTACATTATTCGGATTGATCCGTATCCTGTCCGTTCGCGAGCTCCGTATCCGATCCGATTGCGAATCATGACCAAACGGACAGGATACGGATCAATCCGAATAATGTACTGCTATTTACTGAAAACGGTTCGCGTGCGGTCCGTATGCGGTTCCTATTTCAAACGCGCGCGAACGCGAAGCGTCCGTAACGGACCCGTTCGCATTTTATCTGTGTTACAATTTCACGGTATATGGGCTCAAAGTTGAAAGCTAATTTTTTGATAACTTACATTTTGGGCACAATGTGTGTCGGTGGTTTCTTTCTTGGGTCGATTCGTTTCGCTCGAATCTCCTTTAGAATTCGGTTCCGTGAGAAACTACCTTCATTTA</canonical>
            <polymorphic>TGCAACCGTTGCAGATTTGTACGGCCACTTCAAAAATCGGTAGATCATGACCTCCAGGGAAGACGGAGGAGTCTGATTTTGATTATATATTCCTAACATCACTGATAAAACCTGTTTTATTTTGTGTGCTCTTTTTAAGTCACTTTGACATTATGCTCTTTTGCTGATTGATACTGAAAAAGCTTGAATAGGCGCGTTTAGATAATCTGGAAGGATTGAAAAAGTACCTCCTGGCCAACGTGTGTGGGATTTCCTCTCGCCGCGCTTTACTACGGTGAAATCAAGGAACCGTCTCCAGAAGACTTCAAAAATCAGAATTTCGAAAAAAGAAAAGTTCGAGCATCAACAAAGACACACTTCTGATCTATCTGTCAGGTTTCAGCTCAATCGGTTAACTTTGAAGGGGTGCAAAGGCACGCTACATACATGCGCACATACAGAATTTGGTGAATGTTACACTTTCTGATCTGGAACCTGGGAAAACCAGCAAAAAAGATTGSATCAGCAGGTGGTGTTATATGTATTCAAAGGTGATTCGCGAACAATCCCGTTACGGACGCTCCGCGTTCGCGCGCGGTTGAAATAGGAACCGCATACGGACCGTACGCGAACCGTTTTTAATAAATAGTTGTACATTATTCGGATTGATCCGTATCCTGTCCGTTCGCGAGCTCCGTATCCGATCCGATTGCGAATCATGACCAAACGGACAGGATACGGATCAATCCGAATAATGTACTGCTATTTACTGAAAACGGTTCGCGTGCGGTCCGTATGCGGTTCCTATTTCAAACGCGCGCGAACGCGAAGCGTCCGTAACGGACCCGTTCGCATTTTATCTGTGTTACAATTTCACGGTATATGGGCTCAAAGTTGAAAGCTAATTTTTTGATAACTTACATTTTGGGCACAATGTGTGTCGGTGGTTTCTTTCTTGGGTCGATTCGTTTCGCTCGAATCTCCTTTAGAATTCGGTTCCGTGAGAAACTACCTTCATTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>501 397 91 9 2</canonical_bands>
                <polymorphic_bands>592 397 9 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCTGGTCATCTCAGAGTGC</pcr_primer_p1>
		<pcr_primer_p2>TATGCGGTTCCTATTTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>830</pcr_amplicon_size>
		<canonical_amplicon>GCATCAGCAGGTGGTGTTATATGTATTCAAAGGTGATTCGCGAACAATCCCGTTACGGACGCTCCGCGTTCGCGCGCGGTTGAAATAGGAACCGCATA</canonical_amplicon>
		<polymorphic_amplicon>GSATCAGCAGGTGGTGTTATATGTATTCAAAGGTGATTCGCGAACAATCCCGTTACGGACGCTCCGCGTTCGCGCGCGGTTGAAATAGGAACCGCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32551</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>172609</contig_pos>
        <strand></strand>
        <context>catcttgtgc[A/G]gttttcttct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCTCGAAAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGC</left_flank>
        <right_flank>GTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATCGAAATATGTTTTTTTTTCTGAAAATAATCATGCGGGTTTCCAATATTTTGCTGTCAATATAGCTTTAAAAATTCTAAATATTTTCAGTCCAATGCCCAAACAGTCCAATGTCTATTAGACTAGTGTCCAGAGTTGGCAACTTGAAAACTCTACTGTTTTTAGAGCTTTAATAAATCTGACTCACTTGAATACCAGCGAACCGAAAATTGAAAGGATACGTTAGTTGATTGTGTTGATAGTTTGATTCTACCTCCCGGTGCGATAAAGTTTTATGAGAGTAAAACAGTTCAACTAACTTTTCAACTTTTTGATTGAAGTCAATAACTTGTAGTATAGTAGCATTGGTGGTATTTGTACTTGGAATTGCAGTCACTAGAATATAGGAGCTCCATCCCTGTGGGACATTTATCTAAACAGAAAATTCATCATATATGTGCCTCTGAGTGCTCGAAAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCAGTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAATAAAGCCAGAAGTTGAAAAATAGAAGCCTATGGGCTTCTATCAGTATGGTATTTTATAGAATTGAATAAACATTTTAAATAAGGTTCAAATTTTAAACATTCATTATCTCATTAGAAATAATCCAGTCCGAAGAATCGTCGCAAAATTTCAATAAAACTAAAAGATTTAGCAGTGGACCATTTGACTTTAGTCGCAGTGAAATCGATATAAAATCCGTCTTTTTTAGCATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAAAACATCCGTTTTATTGTTGGTAATTTTCAATTGAAGACTCTTGTTCTGGGATAAATCAACGTTCTGTACA</canonical>
            <polymorphic>TTATCGAAATATGTTTTTTTTTCTGAAAATAATCATGCGGGTTTCCAATATTTTGCTGTCAATATAGCTTTAAAAATTCTAAATATTTTCAGTCCAATGCCCAAACAGTCCAATGTCTATTAGACTAGTGTCCAGAGTTGGCAACTTGAAAACTCTACTGTTTTTAGAGCTTTAATAAATCTGACTCACTTGAATACCAGCGAACCGAAAATTGAAAGGATACGTTAGTTGATTGTGTTGATAGTTTGATTCTACCTCCCGGTGCGATAAAGTTTTATGAGAGTAAAACAGTTCAACTAACTTTTCAACTTTTTGATTGAAGTCAATAACTTGTAGTATAGTAGCATTGGTGGTATTTGTACTTGGAATTGCAGTCACTAGAATATAGGAGCTCCATCCCTGTGGGACATTTATCTAAACAGAAAATTCATCATATATGTGCCTCTGAGTGCTCGAAAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCRGTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAATAAAGCCAGAAGTTGAAAAATAGAAGCCTATGGGCTTCTATCAGTATGGTATTTTATAGAATTGAATAAACATTTTAAATAAGGTTCAAATTTTAAACATTCATTATCTCATTAGAAATAATCCAGTCCGAAGAATCGTCGCAAAATTTCAATAAAACTAAAAGATTTAGCAGTGGACCATTTGACTTTAGTCGCAGTGAAATCGATATAAAATCCGTCTTTTTTAGCATTCAATGGTAAATAAGGTGAGGAATAACTGACTTCCATCTCGGTTCCAACTCCACTGAAGACCGTATTCAACATTGGTGGGTTCGATGAGTTGTACCTGAAATATTTTCTGAGGATTTGCTTGAAAGTTTGTTTGGCTTACACAACATTCAAAACATCCGTTTTATTGTTGGTAATTTTCAATTGAAGACTCTTGTTCTGGGATAAATCAACGTTCTGTACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>502 371 127</canonical_bands>
                <polymorphic_bands>629 371</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGGGACATTTATCTAAACAGAA</pcr_primer_p1>
		<pcr_primer_p2>CGGACTGGATTATTTCTAATGA</pcr_primer_p2>
		<pcr_amplicon_size>278</pcr_amplicon_size>
		<canonical_amplicon>GTGGGACATTTATCTAAACAGAAAATTCATCATATATGTGCCTCTGAGTGCTCGAAAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCAGTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAATAAAGCCAGAAGTTGAAAAATAGAAGCCTATGGGCTTCTATCAGTATGGTATTTTATAGAATTGAATAAACATTTTAAATAAGGTTCAAATTTTAAACATTCATTATCTCATTAGAAATAATCCAGTCCG</canonical_amplicon>
		<polymorphic_amplicon>GTGGGACATTTATCTAAACAGAAAATTCATCATATATGTGCCTCTGAGTGCTCGAAAAATAGAAGGGCTCCTGTATCTAACTGATGCCCATCTTGTGCRGTTTTCTTCTCGGATATTACAGACATAACTTACGTCCATTCTCTGAAAATAAAGCCAGAAGTTGAAAAATAGAAGCCTATGGGCTTCTATCAGTATGGTATTTTATAGAATTGAATAAACATTTTAAATAAGGTTCAAATTTTAAACATTCATTATCTCATTAGAAATAATCCAGTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32552</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>174852</contig_pos>
        <strand>+</strand>
        <context>GGACCATCAG[C/T]TAAAACTCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCGATTTTGTTGGAATAATGTAAAGTAGTTACTCACCTGGACCATCAG</left_flank>
        <right_flank>TAAAACTCTATTTGAAAGTGCAAGAAATAGAAATGTGCCAATGTAAAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGATGCTTCCTCCCGGTGTGATAAAGTAAAACTTCTCGTTATTCGCACTTTGAAAGCTTGAAATCACAAAGTTTTATGAGAGTCAAACAGTTCAACTCACTTTTCAACTTTTTGATTAAAGTCAACAACTTGTAGAATAGGAGAATTGGTAAGGTTAGAAGTTGGAATCGCAGTCACCACAACATAGGAGCTCCATCCCTGTGGGACATTCATCTGAAATACTCCAGATAAAAATTATCATTCTCTTGTCAACCGGGATTGAATCAATTTCGTATCAATTTGTAAGTTATGAGAATGATAAAATCGGTAAAAGAAAGACAACTTGTAACCTGATAAACGCAGTTGTAACCATTAGAAAGCAACACTGGATTCCAGTGATCTGGGTACCAAAATTCATTGGAAATGCCATTCGGTGGATTTAATGTTCCGGGACAAGCTCAAAATTCAAATCGATTTTGTTGGAATAATGTAAAGTAGTTACTCACCTGGACCATCAGCTAAAACTCTATTTGAAAGTGCAAGAAATAGAAATGTGCCAATGTAAAATCCCATTTTTTAACGGCGAATGAAACGTTGTGTACACTTTCTTTGATACCGTACACCTTAAAAAATGAACGGTGAATCATAGAAACTCCCATCAGTCATATTCTTCTTTTTGAATCTAATCACTAGCGAATTCTAAAATTTTGTAAACAACTGATAAGCGGTATCAGAGGTTTGCAATGTTTCATTCCGAAAAAGTTCACATCCGCCGATATGAAATTATATCGAGTTACCCAAATATTAAGGTTTTCGGTTTAATCTAAAAGAAGAGATGTAACCATTCTTATAATCCGGGCTTTTCCCGGTTCTTCGCGGGCCCCGCCAAAGTTTCTTTCAGAATCAAAAGATTAACTAAATTGGATATGATAAAGCTTGACGAGTACTACAAAGCAGGCCTTAAAATGGCCTTTTTCGGACGTGCCGATCACAGACTCTTCTGTTATCAATAGTTGTAG</canonical>
            <polymorphic>TTTGATGCTTCCTCCCGGTGTGATAAAGTAAAACTTCTCGTTATTCGCACTTTGAAAGCTTGAAATCACAAAGTTTTATGAGAGTCAAACAGTTCAACTCACTTTTCAACTTTTTGATTAAAGTCAACAACTTGTAGAATAGGAGAATTGGTAAGGTTAGAAGTTGGAATCGCAGTCACCACAACATAGGAGCTCCATCCCTGTGGGACATTCATCTGAAATACTCCAGATAAAAATTATCATTCTCTTGTCAACCGGGATTGAATCAATTTCGTATCAATTTGTAAGTTATGAGAATGATAAAATCGGTAAAAGAAAGACAACTTGTAACCTGATAAACGCAGTTGTAACCATTAGAAAGCAACACTGGATTCCAGTGATCTGGGTACCAAAATTCATTGGAAATGCCATTCGGTGGATTTAATGTTCCGGGACAAGCTCAAAATTCAAATCGATTTTGTTGGAATAATGTAAAGTAGTTACTCACCTGGACCATCAGYTAAAACTCTATTTGAAAGTGCAAGAAATAGAAATGTGCCAATGTAAAATCCCATTTTTTAACGGCGAATGAAACGTTGTGTACACTTTCTTTGATACCGTACACCTTAAAAAATGAACGGTGAATCATAGAAACTCCCATCAGTCATATTCTTCTTTTTGAATCTAATCACTAGCGAATTCTAAAATTTTGTAAACAACTGATAAGCGGTATCAGAGGTTTGCAATGTTTCATTCCGAAAAAGTTCACATCCGCCGATATGAAATTATATCGAGTTACCCAAATATTAAGGTTTTCGGTTTAATCTAAAAGAAGAGATGTAACCATTCTTATAATCCGGGCTTTTCCCGGTTCTTCGCGGGCCCCGCCAAAGTTTCTTTCAGAATCAAAAGATTAACTAAATTGGATATGATAAAGCTTGACGAGTACTACAAAGCAGGCCTTAAAATGGCCTTTTTCGGACGTGCCGATCACAGACTCTTCTGTTATCAATAGTTGTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>417 246 134 84 61 58</canonical_bands>
                <polymorphic_bands>478 246 134 84 58</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>341 246 134 61 58 55 50 23 21 11</canonical_bands>
                <polymorphic_bands>402 246 134 58 55 50 23 21 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTAGAAAGCAACACTGGATTC</pcr_primer_p1>
		<pcr_primer_p2>GTGTACGGTATCAAAGAAAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTAGAAAGCAACACTGGATTCCAGTGATCTGGGTACCAAAATTCATTGGAAATGCCATTCGGTGGATTTAATGTTCCGGGACAAGCTCAAAATTCAAATCGATTTTGTTGGAATAATGTAAAGTAGTTACTCACCTGGACCATCAGCTAAAACTCTATTTGAAAGTGCAAGAAATAGAAATGTGCCAATGTAAAATCCCATTTTTTAACGGCGAATGAAACGTTGTGTACACTTTCTTTGATACCGTACAC</canonical_amplicon>
		<polymorphic_amplicon>ATTAGAAAGCAACACTGGATTCCAGTGATCTGGGTACCAAAATTCATTGGAAATGCCATTCGGTGGATTTAATGTTCCGGGACAAGCTCAAAATTCAAATCGATTTTGTTGGAATAATGTAAAGTAGTTACTCACCTGGACCATCAGYTAAAACTCTATTTGAAAGTGCAAGAAATAGAAATGTGCCAATGTAAAATCCCATTTTTTAACGGCGAATGAAACGTTGTGTACACTTTCTTTGATACCGTACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32553</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>174865</contig_pos>
        <strand>+</strand>
        <context>AAACTCTATT[A/T]GAAAGTGCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAATAATGTAAAGTAGTTACTCACCTGGACCATCAGCTAAAACTCTATT</left_flank>
        <right_flank>GAAAGTGCAAGAAATAGAAATGTGCCAATGTAAAATCCCATTTTTTAACG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCGGTGTGATAAAGTAAAACTTCTCGTTATTCGCACTTTGAAAGCTTGAAATCACAAAGTTTTATGAGAGTCAAACAGTTCAACTCACTTTTCAACTTTTTGATTAAAGTCAACAACTTGTAGAATAGGAGAATTGGTAAGGTTAGAAGTTGGAATCGCAGTCACCACAACATAGGAGCTCCATCCCTGTGGGACATTCATCTGAAATACTCCAGATAAAAATTATCATTCTCTTGTCAACCGGGATTGAATCAATTTCGTATCAATTTGTAAGTTATGAGAATGATAAAATCGGTAAAAGAAAGACAACTTGTAACCTGATAAACGCAGTTGTAACCATTAGAAAGCAACACTGGATTCCAGTGATCTGGGTACCAAAATTCATTGGAAATGCCATTCGGTGGATTTAATGTTCCGGGACAAGCTCAAAATTCAAATCGATTTTGTTGGAATAATGTAAAGTAGTTACTCACCTGGACCATCAGCTAAAACTCTATTTGAAAGTGCAAGAAATAGAAATGTGCCAATGTAAAATCCCATTTTTTAACGGCGAATGAAACGTTGTGTACACTTTCTTTGATACCGTACACCTTAAAAAATGAACGGTGAATCATAGAAACTCCCATCAGTCATATTCTTCTTTTTGAATCTAATCACTAGCGAATTCTAAAATTTTGTAAACAACTGATAAGCGGTATCAGAGGTTTGCAATGTTTCATTCCGAAAAAGTTCACATCCGCCGATATGAAATTATATCGAGTTACCCAAATATTAAGGTTTTCGGTTTAATCTAAAAGAAGAGATGTAACCATTCTTATAATCCGGGCTTTTCCCGGTTCTTCGCGGGCCCCGCCAAAGTTTCTTTCAGAATCAAAAGATTAACTAAATTGGATATGATAAAGCTTGACGAGTACTACAAAGCAGGCCTTAAAATGGCCTTTTTCGGACGTGCCGATCACAGACTCTTCTGTTATCAATAGTTGTAGACTAATGATAAGA</canonical>
            <polymorphic>CCCGGTGTGATAAAGTAAAACTTCTCGTTATTCGCACTTTGAAAGCTTGAAATCACAAAGTTTTATGAGAGTCAAACAGTTCAACTCACTTTTCAACTTTTTGATTAAAGTCAACAACTTGTAGAATAGGAGAATTGGTAAGGTTAGAAGTTGGAATCGCAGTCACCACAACATAGGAGCTCCATCCCTGTGGGACATTCATCTGAAATACTCCAGATAAAAATTATCATTCTCTTGTCAACCGGGATTGAATCAATTTCGTATCAATTTGTAAGTTATGAGAATGATAAAATCGGTAAAAGAAAGACAACTTGTAACCTGATAAACGCAGTTGTAACCATTAGAAAGCAACACTGGATTCCAGTGATCTGGGTACCAAAATTCATTGGAAATGCCATTCGGTGGATTTAATGTTCCGGGACAAGCTCAAAATTCAAATCGATTTTGTTGGAATAATGTAAAGTAGTTACTCACCTGGACCATCAGCTAAAACTCTATTWGAAAGTGCAAGAAATAGAAATGTGCCAATGTAAAATCCCATTTTTTAACGGCGAATGAAACGTTGTGTACACTTTCTTTGATACCGTACACCTTAAAAAATGAACGGTGAATCATAGAAACTCCCATCAGTCATATTCTTCTTTTTGAATCTAATCACTAGCGAATTCTAAAATTTTGTAAACAACTGATAAGCGGTATCAGAGGTTTGCAATGTTTCATTCCGAAAAAGTTCACATCCGCCGATATGAAATTATATCGAGTTACCCAAATATTAAGGTTTTCGGTTTAATCTAAAAGAAGAGATGTAACCATTCTTATAATCCGGGCTTTTCCCGGTTCTTCGCGGGCCCCGCCAAAGTTTCTTTCAGAATCAAAAGATTAACTAAATTGGATATGATAAAGCTTGACGAGTACTACAAAGCAGGCCTTAAAATGGCCTTTTTCGGACGTGCCGATCACAGACTCTTCTGTTATCAATAGTTGTAGACTAATGATAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTAGAAAGCAACACTGGATTC</pcr_primer_p1>
		<pcr_primer_p2>GTGTACGGTATCAAAGAAAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTAGAAAGCAACACTGGATTCCAGTGATCTGGGTACCAAAATTCATTGGAAATGCCATTCGGTGGATTTAATGTTCCGGGACAAGCTCAAAATTCAAATCGATTTTGTTGGAATAATGTAAAGTAGTTACTCACCTGGACCATCAGCTAAAACTCTATTTGAAAGTGCAAGAAATAGAAATGTGCCAATGTAAAATCCCATTTTTTAACGGCGAATGAAACGTTGTGTACACTTTCTTTGATACCGTACAC</canonical_amplicon>
		<polymorphic_amplicon>ATTAGAAAGCAACACTGGATTCCAGTGATCTGGGTACCAAAATTCATTGGAAATGCCATTCGGTGGATTTAATGTTCCGGGACAAGCTCAAAATTCAAATCGATTTTGTTGGAATAATGTAAAGTAGTTACTCACCTGGACCATCAGCTAAAACTCTATTWGAAAGTGCAAGAAATAGAAATGTGCCAATGTAAAATCCCATTTTTTAACGGCGAATGAAACGTTGTGTACACTTTCTTTGATACCGTACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32554</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>175275</contig_pos>
        <strand>+</strand>
        <context>AAAGCTTGAC[A/G]AGTACTACAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCTTTCAGAATCAAAAGATTAACTAAATTGGATATGATAAAGCTTGAC</left_flank>
        <right_flank>AGTACTACAAAGCAGGCCTTAAAATGGCCTTTTTCGGACGTGCCGATCAC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTTCCGGGACAAGCTCAAAATTCAAATCGATTTTGTTGGAATAATGTAAAGTAGTTACTCACCTGGACCATCAGCTAAAACTCTATTTGAAAGTGCAAGAAATAGAAATGTGCCAATGTAAAATCCCATTTTTTAACGGCGAATGAAACGTTGTGTACACTTTCTTTGATACCGTACACCTTAAAAAATGAACGGTGAATCATAGAAACTCCCATCAGTCATATTCTTCTTTTTGAATCTAATCACTAGCGAATTCTAAAATTTTGTAAACAACTGATAAGCGGTATCAGAGGTTTGCAATGTTTCATTCCGAAAAAGTTCACATCCGCCGATATGAAATTATATCGAGTTACCCAAATATTAAGGTTTTCGGTTTAATCTAAAAGAAGAGATGTAACCATTCTTATAATCCGGGCTTTTCCCGGTTCTTCGCGGGCCCCGCCAAAGTTTCTTTCAGAATCAAAAGATTAACTAAATTGGATATGATAAAGCTTGACGAGTACTACAAAGCAGGCCTTAAAATGGCCTTTTTCGGACGTGCCGATCACAGACTCTTCTGTTATCAATAGTTGTAGACTAATGATAAGAGATAATTAATTTGGAATAATTTGTTCTGAAGATGATTGATTAAAATTGATAGACAGAATTTAATTAATCTCAGAATTACAGAATCCTAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCCGGATCTCAGAATCTCAGATTCTCAGGATGTTGGGATTTCAGAATCTATAGGTTGAGTGATTAATCTGGAAACATGTCCGTACTCCTAGAAGGTGATAAAGTTAGTCATCTCCAGAAATATTGATCATAACGTCTTCTTTTCAAAAAAAAAGTCTGCCGCAAATCTAGAAGCCAAGCGTCTTCTTTTGATATCATGTTACTTTCCCATCGGAGGAAATTCTAGTCGACTACGCTCTAGGGAAGCGAAATGGAGCCGTCGTCGTGCTCTGAGGGCA</canonical>
            <polymorphic>ATGTTCCGGGACAAGCTCAAAATTCAAATCGATTTTGTTGGAATAATGTAAAGTAGTTACTCACCTGGACCATCAGCTAAAACTCTATTTGAAAGTGCAAGAAATAGAAATGTGCCAATGTAAAATCCCATTTTTTAACGGCGAATGAAACGTTGTGTACACTTTCTTTGATACCGTACACCTTAAAAAATGAACGGTGAATCATAGAAACTCCCATCAGTCATATTCTTCTTTTTGAATCTAATCACTAGCGAATTCTAAAATTTTGTAAACAACTGATAAGCGGTATCAGAGGTTTGCAATGTTTCATTCCGAAAAAGTTCACATCCGCCGATATGAAATTATATCGAGTTACCCAAATATTAAGGTTTTCGGTTTAATCTAAAAGAAGAGATGTAACCATTCTTATAATCCGGGCTTTTCCCGGTTCTTCGCGGGCCCCGCCAAAGTTTCTTTCAGAATCAAAAGATTAACTAAATTGGATATGATAAAGCTTGACRAGTACTACAAAGCAGGCCTTAAAATGGCCTTTTTCGGACGTGCCGATCACAGACTCTTCTGTTATCAATAGTTGTAGACTAATGATAAGAGATAATTAATTTGGAATAATTTGTTCTGAAGATGATTGATTAAAATTGATAGACAGAATTTAATTAATCTCAGAATTACAGAATCCTAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGGATCTCCGGATCTCAGAATCTCAGATTCTCAGGATGTTGGGATTTCAGAATCTATAGGTTGAGTGATTAATCTGGAAACATGTCCGTACTCCTAGAAGGTGATAAAGTTAGTCATCTCCAGAAATATTGATCATAACGTCTTCTTTTCAAAAAAAAAGTCTGCCGCAAATCTAGAAGCCAAGCGTCTTCTTTTGATATCATGTTACTTTCCCATCGGAGGAAATTCTAGTCGACTACGCTCTAGGGAAGCGAAATGGAGCCGTCGTCGTGCTCTGAGGGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGGTTTAATCTAAAAGAAGAGA</pcr_primer_p1>
		<pcr_primer_p2>TTCAGAACAAATTATTCCAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCGGTTTAATCTAAAAGAAGAGATGTAACCATTCTTATAATCCGGGCTTTTCCCGGTTCTTCGCGGGCCCCGCCAAAGTTTCTTTCAGAATCAAAAGATTAACTAAATTGGATATGATAAAGCTTGACGAGTACTACAAAGCAGGCCTTAAAATGGCCTTTTTCGGACGTGCCGATCACAGACTCTTCTGTTATCAATAGTTGTAGACTAATGATAAGAGATAATTAATTTGGAATAATTTGTTCTGAA</canonical_amplicon>
		<polymorphic_amplicon>TCGGTTTAATCTAAAAGAAGAGATGTAACCATTCTTATAATCCGGGCTTTTCCCGGTTCTTCGCGGGCCCCGCCAAAGTTTCTTTCAGAATCAAAAGATTAACTAAATTGGATATGATAAAGCTTGACRAGTACTACAAAGCAGGCCTTAAAATGGCCTTTTTCGGACGTGCCGATCACAGACTCTTCTGTTATCAATAGTTGTAGACTAATGATAAGAGATAATTAATTTGGAATAATTTGTTCTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32555</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>179819</contig_pos>
        <strand></strand>
        <context>CAAAAATTTT[A/T]AAAATCAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTCCCAGAAAACTTGAAATCCTTAAAATCCTAAAATCCCAAAAATTTT</left_flank>
        <right_flank>AAAATCAAAAATTCAGAAATTCTCGATCTTTTAAAAATCTGAAATTTCTA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATAAAAAAAGAAGATCCAAGATCTCCCATATTCTTCGTGATCTCCCATATATATTCATTCAGAAATTCAGAAATTCAAAAATTCAGAATCTCAGAATCTATAAATCTCAGAATCTCAAAATCTATGAAAAAGTCTCGAAGTCTGAGAATCTGAGAATCTGAGAATCTCAGAAGCTCAGAATCTCAGAATATCGGAATCTCAGAATCTAAGAATCTAAGAATCTCAGGATCTGAGAATCTAAGAATCTCAGAATCTCAGAATCTCACAATCTCAGAATCTCAGAATCTCAGATTCTCAGAATATCGGAATATAAGAATCTAAGAATCTCAGGATCTCAGAAGCTCAGGATCTCCGAATCTAAGAATACAAGAGATTCAGAATTGTAAAACTTCTGATAATCCGGAAACCCTGAAACTCTATAAATTTGAGAAATGAAAAAAAATCGAAAATTCCCAGAAAACTTGAAATCCTTAAAATCCTAAAATCCCAAAAATTTTAAAAATCAAAAATTCAGAAATTCTCGATCTTTTAAAAATCTGAAATTTCTAAAATCGAAAAGTTAGAAATTCTGAAAGTTTGAAACCCTAAAAGTTAAAACATTGAAAATATTAAAAAATCCTAAAAAGGCATATCCAAACTTTTCCTTCTTTTTCCGTAAAATTTTTTACGAAATTTTTTTCTTTATTTATAAAGAAAGTATTGGATTTTAATTTAATTTGTATCAATTTAATTATTTTTCAATAGTATTTTTCTTCTTTTCTCCATTCTATGATTCCTAAAAAGTCAAATTTCCCAATCTAAATCCCCCAATTTTTCTATTCTCCCGAACTCCGATTCTCGAGCACAAATTCCATTCTCTTGCATTCCAACAACACATGTGTCATCCTATTTTTTTTTCTTTGTTTTTTTATGTTTCTCATATTTTGAAAACACTCAGTTATCTATATGTTTTCACATCTGTTCAACATGAGGATTCCAAGAAAAATCGAAAAAACTAA</canonical>
            <polymorphic>GAATAAAAAAAGAAGATCCAAGATCTCCCATATTCTTCGTGATCTCCCATATATATTCATTCAGAAATTCAGAAATTCAAAAATTCAGAATCTCAGAATCTATAAATCTCAGAATCTCAAAATCTATGAAAAAGTCTCGAAGTCTGAGAATCTGAGAATCTGAGAATCTCAGAAGCTCAGAATCTCAGAATATCGGAATCTCAGAATCTAAGAATCTAAGAATCTCAGGATCTGAGAATCTAAGAATCTCAGAATCTCAGAATCTCACAATCTCAGAATCTCAGAATCTCAGATTCTCAGAATATCGGAATATAAGAATCTAAGAATCTCAGGATCTCAGAAGCTCAGGATCTCCGAATCTAAGAATACAAGAGATTCAGAATTGTAAAACTTCTGATAATCCGGAAACCCTGAAACTCTATAAATTTGAGAAATGAAAAAAAATCGAAAATTCCCAGAAAACTTGAAATCCTTAAAATCCTAAAATCCCAAAAATTTTWAAAATCAAAAATTCAGAAATTCTCGATCTTTTAAAAATCTGAAATTTCTAAAATCGAAAAGTTAGAAATTCTGAAAGTTTGAAACCCTAAAAGTTAAAACATTGAAAATATTAAAAAATCCTAAAAAGGCATATCCAAACTTTTCCTTCTTTTTCCGTAAAATTTTTTACGAAATTTTTTTCTTTATTTATAAAGAAAGTATTGGATTTTAATTTAATTTGTATCAATTTAATTATTTTTCAATAGTATTTTTCTTCTTTTCTCCATTCTATGATTCCTAAAAAGTCAAATTTCCCAATCTAAATCCCCCAATTTTTCTATTCTCCCGAACTCCGATTCTCGAGCACAAATTCCATTCTCTTGCATTCCAACAACACATGTGTCATCCTATTTTTTTTTCTTTGTTTTTTTATGTTTCTCATATTTTGAAAACACTCAGTTATCTATATGTTTTCACATCTGTTCAACATGAGGATTCCAAGAAAAATCGAAAAAACTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 468 33</canonical_bands>
                <polymorphic_bands>532 468</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>473 271 98 63 33 25 17 15 5</canonical_bands>
                <polymorphic_bands>473 271 98 63 58 17 15 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCGAATCTAAGAATACAAGAGA</pcr_primer_p1>
		<pcr_primer_p2>TGTTTTAACTTTTAGGGTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCGAATCTAAGAATACAAGAGATTCAGAATTGTAAAACTTCTGATAATCCGGAAACCCTGAAACTCTATAAATTTGAGAAATGAAAAAAAATCGAAAATTCCCAGAAAACTTGAAATCCTTAAAATCCTAAAATCCCAAAAATTTTAAAAATCAAAAATTCAGAAATTCTCGATCTTTTAAAAATCTGAAATTTCTAAAATCGAAAAGTTAGAAATTCTGAAAGTTTGAAACCCTAAAAGTTAAAACA</canonical_amplicon>
		<polymorphic_amplicon>TCCGAATCTAAGAATACAAGAGATTCAGAATTGTAAAACTTCTGATAATCCGGAAACCCTGAAACTCTATAAATTTGAGAAATGAAAAAAAATCGAAAATTCCCAGAAAACTTGAAATCCTTAAAATCCTAAAATCCCAAAAATTTTWAAAATCAAAAATTCAGAAATTCTCGATCTTTTAAAAATCTGAAATTTCTAAAATCGAAAAGTTAGAAATTCTGAAAGTTTGAAACCCTAAAAGTTAAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32556</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>180867</contig_pos>
        <strand>-</strand>
        <context>aaattctgaa[A/T]ttctyaawtt</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTCTGAATTTCTGAATTTCTGAAATTCTTAAATTCTTAAATTCTGAA</left_flank>
        <right_flank>TTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGTCGTCTTCAGCAGCTGCCCCAATCCATCAGAAATCTTTTTCTTCAGAAAAAAAAACGAAAAATCCAGATTCCTCTTTCCATGTTTCGATGTCGCAATCGCTGATTGCATAATCGGCAAAATCCCAAAAAAAGTGGAAAAAAGTGGATTCTCGATTACAATAAAGCCGTCTGGACATGAAATTTAGGCATTCGGAAGAAGGCATTTTTATTCAAAAGAAAAGATTCCTTATCATTATATCAGTGATAAGCAAGATCACGAAGAATATGGGAGATCTTGGATCTTCTTTTTTATTCTTCTTCTTTCTTTGTTTGTGATCATTTGGGAGAACGAATATCTGGAAAAAAAATGAAATTGCAAGATTCTGAATGTCTAAAATTGTGAATTTCGTAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTTAAATTCTTAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTAAAATTCTTAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTAAAATTCTTAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTAAAATTCTTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAAAATTTCTGAAATTCTGAGATTTTCAAGGTTCTGAAATTCTCTAATTGTGAAATTCGGAAAATCTGAAATTTGGTAAGT</canonical>
            <polymorphic>TGTGTCGTCTTCAGCAGCTGCCCCAATCCATCAGAAATCTTTTTCTTCAGAAAAAAAAACGAAAAATCCAGATTCCTCTTTCCATGTTTCGATGTCGCAATCGCTGATTGCATAATCGGCAAAATCCCAAAAAAAGTGGAAAAAAGTGGATTCTCGATTACAATAAAGCCGTCTGGACATGAAATTTAGGCATTCGGAAGAAGGCATTTTTATTCAAAAGAAAAGATTCCTTATCATTATATCAGTGATAAGCAAGATCACGAAGAATATGGGAGATCTTGGATCTTCTTTTTTATTCTTCTTCTTTCTTTGTTTGTGATCATTTGGGAGAACGAATATCTGGAAAAAAAATGAAATTGCAAGATTCTGAATGTCTAAAATTGTGAATTTCGTAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTTAAATTCTTAAATTCTGAAWTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTAAAATTCTTAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTAAAATTCTTAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTAAAATTCTTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAAAATTTCTGAAATTCTGAGATTTTCAAGGTTCTGAAATTCTCTAATTGTGAAATTCGGAAAATCTGAAATTTGGTAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>203 182 25 16 16 16 12 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7</canonical_bands>
                <polymorphic_bands>203 182 25 16 16 16 15 12 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>182 172 25 24 16 12 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7 7</canonical_bands>
                <polymorphic_bands>182 172 25 24 16 15 12 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTTGGGAGAACGAATATC</pcr_primer_p1>
		<pcr_primer_p2>AAGTTACAGGCATTTCGATTT</pcr_primer_p2>
		<pcr_amplicon_size>931</pcr_amplicon_size>
		<canonical_amplicon>CATTTGGGAGAACGAATATCTGGAAAAAAAATGAAATTGCAAGATTCTGAATGTCTAAAATTGTGAATTTCGTAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTTAAATTCTTAAATTCTGAATTTCTGAATTTCTGAATTTCT</canonical_amplicon>
		<polymorphic_amplicon>CATTTGGGAGAACGAATATCTGGAAAAAAAATGAAATTGCAAGATTCTGAATGTCTAAAATTGTGAATTTCGTAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTTAAATTCTTAAATTCTGAAWTTCTGAATTTCTGAATTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32557</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>180872</contig_pos>
        <strand>-</strand>
        <context>ctgaawttct[C/T]aawttctgaa</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGAATTTCTGAATTTCTGAAATTCTTAAATTCTTAAATTCTGAATTTCT</left_flank>
        <right_flank>AATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTCTTCAGCAGCTGCCCCAATCCATCAGAAATCTTTTTCTTCAGAAAAAAAAACGAAAAATCCAGATTCCTCTTTCCATGTTTCGATGTCGCAATCGCTGATTGCATAATCGGCAAAATCCCAAAAAAAGTGGAAAAAAGTGGATTCTCGATTACAATAAAGCCGTCTGGACATGAAATTTAGGCATTCGGAAGAAGGCATTTTTATTCAAAAGAAAAGATTCCTTATCATTATATCAGTGATAAGCAAGATCACGAAGAATATGGGAGATCTTGGATCTTCTTTTTTATTCTTCTTCTTTCTTTGTTTGTGATCATTTGGGAGAACGAATATCTGGAAAAAAAATGAAATTGCAAGATTCTGAATGTCTAAAATTGTGAATTTCGTAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTTAAATTCTTAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTAAAATTCTTAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTAAAATTCTTAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTAAAATTCTTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAAAATTTCTGAAATTCTGAGATTTTCAAGGTTCTGAAATTCTCTAATTGTGAAATTCGGAAAATCTGAAATTTGGTAAGTCTGAA</canonical>
            <polymorphic>CGTCTTCAGCAGCTGCCCCAATCCATCAGAAATCTTTTTCTTCAGAAAAAAAAACGAAAAATCCAGATTCCTCTTTCCATGTTTCGATGTCGCAATCGCTGATTGCATAATCGGCAAAATCCCAAAAAAAGTGGAAAAAAGTGGATTCTCGATTACAATAAAGCCGTCTGGACATGAAATTTAGGCATTCGGAAGAAGGCATTTTTATTCAAAAGAAAAGATTCCTTATCATTATATCAGTGATAAGCAAGATCACGAAGAATATGGGAGATCTTGGATCTTCTTTTTTATTCTTCTTCTTTCTTTGTTTGTGATCATTTGGGAGAACGAATATCTGGAAAAAAAATGAAATTGCAAGATTCTGAATGTCTAAAATTGTGAATTTCGTAATTTCTGAATTTCTYAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTTAAATTCTTAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTAAAATTCTTAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTAAAATTCTTAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTAAAATTCTTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAAAATTTCTGAAATTCTGAGATTTTCAAGGTTCTGAAATTCTCTAATTGTGAAATTCGGAAAATCTGAAATTTGGTAAGTCTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>203 177 25 17 16 16 16 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7</canonical_bands>
                <polymorphic_bands>203 177 25 17 16 16 16 16 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>172 147 32 28 25 24 24 24 24 17 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 3</canonical_bands>
                <polymorphic_bands>172 147 32 28 25 24 24 24 24 17 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTTGGGAGAACGAATATC</pcr_primer_p1>
		<pcr_primer_p2>AAGTTACAGGCATTTCGATTT</pcr_primer_p2>
		<pcr_amplicon_size>931</pcr_amplicon_size>
		<canonical_amplicon>CATTTGGGAGAACGAATATCTGGAAAAAAAATGAAATTGCAAGATTCTGAATGTCTAAAATTGTGAATTTCGTAATTTCTGAATTTCTYAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTTAAATTCTTAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATT</canonical_amplicon>
		<polymorphic_amplicon>CATTTGGGAGAACGAATATCTGGAAAAAAAATGAAATTGCAAGATTCTGAATGTCTAAAATTGTGAATTTCGTAATTTCTGAATTTCTYAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTTAAATTCTTAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32558</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>180875</contig_pos>
        <strand>-</strand>
        <context>aawttctyaa[A/T]ttctgaattt</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTCTGAATTTCTGAAATTCTTAAATTCTTAAATTCTGAATTTCTGAA</left_flank>
        <right_flank>TTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCAGCAGCTGCCCCAATCCATCAGAAATCTTTTTCTTCAGAAAAAAAAACGAAAAATCCAGATTCCTCTTTCCATGTTTCGATGTCGCAATCGCTGATTGCATAATCGGCAAAATCCCAAAAAAAGTGGAAAAAAGTGGATTCTCGATTACAATAAAGCCGTCTGGACATGAAATTTAGGCATTCGGAAGAAGGCATTTTTATTCAAAAGAAAAGATTCCTTATCATTATATCAGTGATAAGCAAGATCACGAAGAATATGGGAGATCTTGGATCTTCTTTTTTATTCTTCTTCTTTCTTTGTTTGTGATCATTTGGGAGAACGAATATCTGGAAAAAAAATGAAATTGCAAGATTCTGAATGTCTAAAATTGTGAATTTCGTAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTTAAATTCTTAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTAAAATTCTTAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTAAAATTCTTAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTAAAATTCTTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAAAATTTCTGAAATTCTGAGATTTTCAAGGTTCTGAAATTCTCTAATTGTGAAATTCGGAAAATCTGAAATTTGGTAAGTCTGAAAAT</canonical>
            <polymorphic>CTTCAGCAGCTGCCCCAATCCATCAGAAATCTTTTTCTTCAGAAAAAAAAACGAAAAATCCAGATTCCTCTTTCCATGTTTCGATGTCGCAATCGCTGATTGCATAATCGGCAAAATCCCAAAAAAAGTGGAAAAAAGTGGATTCTCGATTACAATAAAGCCGTCTGGACATGAAATTTAGGCATTCGGAAGAAGGCATTTTTATTCAAAAGAAAAGATTCCTTATCATTATATCAGTGATAAGCAAGATCACGAAGAATATGGGAGATCTTGGATCTTCTTTTTTATTCTTCTTCTTTCTTTGTTTGTGATCATTTGGGAGAACGAATATCTGGAAAAAAAATGAAATTGCAAGATTCTGAATGTCTAAAATTGTGAATTTCGTAATTTCTGAAWTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTTAAATTCTTAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTAAAATTCTTAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTAAAATTCTTAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTAAAATTCTTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAAAATTTCTGAAATTCTGAGATTTTCAAGGTTCTGAAATTCTCTAATTGTGAAATTCGGAAAATCTGAAATTTGGTAAGTCTGAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>203 174 25 20 16 16 16 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7</canonical_bands>
                <polymorphic_bands>203 174 25 24 20 16 16 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>174 172 25 24 20 16 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7 7</canonical_bands>
                <polymorphic_bands>174 172 25 24 20 16 16 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTTGGGAGAACGAATATC</pcr_primer_p1>
		<pcr_primer_p2>AAGTTACAGGCATTTCGATTT</pcr_primer_p2>
		<pcr_amplicon_size>931</pcr_amplicon_size>
		<canonical_amplicon>CATTTGGGAGAACGAATATCTGGAAAAAAAATGAAATTGCAAGATTCTGAATGTCTAAAATTGTGAATTTCGTAATTTCTGAAWTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTTAAATTCTTAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCT</canonical_amplicon>
		<polymorphic_amplicon>CATTTGGGAGAACGAATATCTGGAAAAAAAATGAAATTGCAAGATTCTGAATGTCTAAAATTGTGAATTTCGTAATTTCTGAAWTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAATTCTTAAATTCTTAAATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32563</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>211608</contig_pos>
        <strand>+</strand>
        <context>GGAAAAAAAA[C/T]CATCTTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTCAGAAATTCAGAAATTCAGAAAATTGCGAAAATTTGGAAAAAAAA</left_flank>
        <right_flank>CATCTTTTTCAATATTTTCAATAAAAGTACAGTAATCTTCACAGGATACG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAAAATGGAAAAAAACATGTGAAAAGCTCATTAAAGTTGTTTTTGTCTGGGAAAATGAAAAAAAAAACACACACACAAGAAAAAAATGTGATAAGCATTGAGCTAGAAAACGAAATTGAAAAAGTGATCATTCATTTTTTTTATTATGAAGAAAGGGACTTGAACGAAATTTCAGAATTTCAAAATTCCAGAATCTCAGGATCTTAGAATCTCAGAATCTCAGAGTCTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAAATTGCGAAAATTTGGAAAAAAAATCATCTTTTTCAATATTTTCAATAAAAGTACAGTAATCTTCACAGGATACGGTAACTCTTTTGTAGCTACAGTAAGTCTTCAAAAAACCGAAAATTTGATCTCCCTCAAAAGGAGAGAGAGAGAGAGAAATCTCTGAAAACATTGAAAATTCAGAAAGTTTCTGAAAATCAATAGATTCTAAAAATCTGAAAATCTGGAAATTTTTCAAAATTTCAGAGTTTCAGGATCTCATATTCTCAGAGTCTGAGAATCTCAGAACTTCAAATTTTCAGAATCTTAGAATCTCAATCTCAGAATTCCGTCAAAAATCGAAATGTTCTAATTTTCAATTTTCCATGACATCATTCAACAATAATTGGGTGAATGTTGTTTGGTCAAGTGTTCAAAACCTAATTGATCAAATTCGTGAGAAAAGAGAAAAAACACAGAAATCAAAAAACGAAATGTCACCTAGATCAGCTGACGATTCGTTAAAAACGGGGATCAGAGGGAAATGATTC</canonical>
            <polymorphic>AGAAAAATGGAAAAAAACATGTGAAAAGCTCATTAAAGTTGTTTTTGTCTGGGAAAATGAAAAAAAAAACACACACACAAGAAAAAAATGTGATAAGCATTGAGCTAGAAAACGAAATTGAAAAAGTGATCATTCATTTTTTTTATTATGAAGAAAGGGACTTGAACGAAATTTCAGAATTTCAAAATTCCAGAATCTCAGGATCTTAGAATCTCAGAATCTCAGAGTCTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAAATTGCGAAAATTTGGAAAAAAAAYCATCTTTTTCAATATTTTCAATAAAAGTACAGTAATCTTCACAGGATACGGTAACTCTTTTGTAGCTACAGTAAGTCTTCAAAAAACCGAAAATTTGATCTCCCTCAAAAGGAGAGAGAGAGAGAGAAATCTCTGAAAACATTGAAAATTCAGAAAGTTTCTGAAAATCAATAGATTCTAAAAATCTGAAAATCTGGAAATTTTTCAAAATTTCAGAGTTTCAGGATCTCATATTCTCAGAGTCTGAGAATCTCAGAACTTCAAATTTTCAGAATCTTAGAATCTCAATCTCAGAATTCCGTCAAAAATCGAAATGTTCTAATTTTCAATTTTCCATGACATCATTCAACAATAATTGGGTGAATGTTGTTTGGTCAAGTGTTCAAAACCTAATTGATCAAATTCGTGAGAAAAGAGAAAAAACACAGAAATCAAAAAACGAAATGTCACCTAGATCAGCTGACGATTCGTTAAAAACGGGGATCAGAGGGAAATGATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTTGAACGAAATTTCAGAAT</pcr_primer_p1>
		<pcr_primer_p2>GAGATCAAATTTTCGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>444</pcr_amplicon_size>
		<canonical_amplicon>GACTTGAACGAAATTTCAGAATTTCAAAATTCCAGAATCTCAGGATCTTAGAATCTCAGAATCTCAGAGTCTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAAATTGCGAAAATTTGGAAAAAAAATCATCTTTTTCAATATTTTCAATAAAAGTACAGTAATCTTCACAGGATACGGTAACTCTTTTGTAGCTACAGTAAGTCTTCAAAAAACCGAAAATTTGATCTC</canonical_amplicon>
		<polymorphic_amplicon>GACTTGAACGAAATTTCAGAATTTCAAAATTCCAGAATCTCAGGATCTTAGAATCTCAGAATCTCAGAGTCTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAAATTGCGAAAATTTGGAAAAAAAAYCATCTTTTTCAATATTTTCAATAAAAGTACAGTAATCTTCACAGGATACGGTAACTCTTTTGTAGCTACAGTAAGTCTTCAAAAAACCGAAAATTTGATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32564</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>211658</contig_pos>
        <strand>+</strand>
        <context>CACAGGATAC[A/G]GTAACTCTTY</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATCTTTTTCAATATTTTCAATAAAAGTACAGTAATCTTCACAGGATAC</left_flank>
        <right_flank>GTAACTCTTTTGTAGCTACAGTAAGTCTTCAAAAAACCGAAAATTTGATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGAAAATGAAAAAAAAAACACACACACAAGAAAAAAATGTGATAAGCATTGAGCTAGAAAACGAAATTGAAAAAGTGATCATTCATTTTTTTTATTATGAAGAAAGGGACTTGAACGAAATTTCAGAATTTCAAAATTCCAGAATCTCAGGATCTTAGAATCTCAGAATCTCAGAGTCTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAAATTGCGAAAATTTGGAAAAAAAATCATCTTTTTCAATATTTTCAATAAAAGTACAGTAATCTTCACAGGATACGGTAACTCTTTTGTAGCTACAGTAAGTCTTCAAAAAACCGAAAATTTGATCTCCCTCAAAAGGAGAGAGAGAGAGAGAAATCTCTGAAAACATTGAAAATTCAGAAAGTTTCTGAAAATCAATAGATTCTAAAAATCTGAAAATCTGGAAATTTTTCAAAATTTCAGAGTTTCAGGATCTCATATTCTCAGAGTCTGAGAATCTCAGAACTTCAAATTTTCAGAATCTTAGAATCTCAATCTCAGAATTCCGTCAAAAATCGAAATGTTCTAATTTTCAATTTTCCATGACATCATTCAACAATAATTGGGTGAATGTTGTTTGGTCAAGTGTTCAAAACCTAATTGATCAAATTCGTGAGAAAAGAGAAAAAACACAGAAATCAAAAAACGAAATGTCACCTAGATCAGCTGACGATTCGTTAAAAACGGGGATCAGAGGGAAATGATTCAAAGGCGCATCGTCAGTACCAGCAGCCAAAGTTCTATGCGCCTTTAAAGG</canonical>
            <polymorphic>GGGAAAATGAAAAAAAAAACACACACACAAGAAAAAAATGTGATAAGCATTGAGCTAGAAAACGAAATTGAAAAAGTGATCATTCATTTTTTTTATTATGAAGAAAGGGACTTGAACGAAATTTCAGAATTTCAAAATTCCAGAATCTCAGGATCTTAGAATCTCAGAATCTCAGAGTCTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAAATTGCGAAAATTTGGAAAAAAAATCATCTTTTTCAATATTTTCAATAAAAGTACAGTAATCTTCACAGGATACRGTAACTCTTTTGTAGCTACAGTAAGTCTTCAAAAAACCGAAAATTTGATCTCCCTCAAAAGGAGAGAGAGAGAGAGAAATCTCTGAAAACATTGAAAATTCAGAAAGTTTCTGAAAATCAATAGATTCTAAAAATCTGAAAATCTGGAAATTTTTCAAAATTTCAGAGTTTCAGGATCTCATATTCTCAGAGTCTGAGAATCTCAGAACTTCAAATTTTCAGAATCTTAGAATCTCAATCTCAGAATTCCGTCAAAAATCGAAATGTTCTAATTTTCAATTTTCCATGACATCATTCAACAATAATTGGGTGAATGTTGTTTGGTCAAGTGTTCAAAACCTAATTGATCAAATTCGTGAGAAAAGAGAAAAAACACAGAAATCAAAAAACGAAATGTCACCTAGATCAGCTGACGATTCGTTAAAAACGGGGATCAGAGGGAAATGATTCAAAGGCGCATCGTCAGTACCAGCAGCCAAAGTTCTATGCGCCTTTAAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTTGAACGAAATTTCAGAAT</pcr_primer_p1>
		<pcr_primer_p2>GAGATCAAATTTTCGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>444</pcr_amplicon_size>
		<canonical_amplicon>GACTTGAACGAAATTTCAGAATTTCAAAATTCCAGAATCTCAGGATCTTAGAATCTCAGAATCTCAGAGTCTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAAATTGCGAAAATTTGGAAAAAAAATCATCTTTTTCAATATTTTCAATAAAAGTACAGTAATCTTCACAGGATACGGTAACTCTTTTGTAGCTACAGTAAGTCTTCAAAAAACCGAAAATTTGATCTC</canonical_amplicon>
		<polymorphic_amplicon>GACTTGAACGAAATTTCAGAATTTCAAAATTCCAGAATCTCAGGATCTTAGAATCTCAGAATCTCAGAGTCTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAAATTGCGAAAATTTGGAAAAAAAATCATCTTTTTCAATATTTTCAATAAAAGTACAGTAATCTTCACAGGATACRGTAACTCTTTTGTAGCTACAGTAAGTCTTCAAAAAACCGAAAATTTGATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32565</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>211668</contig_pos>
        <strand>+</strand>
        <context>RGTAACTCTT[C/T]TGTAGCTACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATATTTTCAATAAAAGTACAGTAATCTTCACAGGATACGGTAACTCTT</left_flank>
        <right_flank>TGTAGCTACAGTAAGTCTTCAAAAAACCGAAAATTTGATCTCCCTCAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAAAACACACACACAAGAAAAAAATGTGATAAGCATTGAGCTAGAAAACGAAATTGAAAAAGTGATCATTCATTTTTTTTATTATGAAGAAAGGGACTTGAACGAAATTTCAGAATTTCAAAATTCCAGAATCTCAGGATCTTAGAATCTCAGAATCTCAGAGTCTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAAATTGCGAAAATTTGGAAAAAAAATCATCTTTTTCAATATTTTCAATAAAAGTACAGTAATCTTCACAGGATACGGTAACTCTTTTGTAGCTACAGTAAGTCTTCAAAAAACCGAAAATTTGATCTCCCTCAAAAGGAGAGAGAGAGAGAGAAATCTCTGAAAACATTGAAAATTCAGAAAGTTTCTGAAAATCAATAGATTCTAAAAATCTGAAAATCTGGAAATTTTTCAAAATTTCAGAGTTTCAGGATCTCATATTCTCAGAGTCTGAGAATCTCAGAACTTCAAATTTTCAGAATCTTAGAATCTCAATCTCAGAATTCCGTCAAAAATCGAAATGTTCTAATTTTCAATTTTCCATGACATCATTCAACAATAATTGGGTGAATGTTGTTTGGTCAAGTGTTCAAAACCTAATTGATCAAATTCGTGAGAAAAGAGAAAAAACACAGAAATCAAAAAACGAAATGTCACCTAGATCAGCTGACGATTCGTTAAAAACGGGGATCAGAGGGAAATGATTCAAAGGCGCATCGTCAGTACCAGCAGCCAAAGTTCTATGCGCCTTTAAAGGAGGCGAGACA</canonical>
            <polymorphic>AAAAAAAAACACACACACAAGAAAAAAATGTGATAAGCATTGAGCTAGAAAACGAAATTGAAAAAGTGATCATTCATTTTTTTTATTATGAAGAAAGGGACTTGAACGAAATTTCAGAATTTCAAAATTCCAGAATCTCAGGATCTTAGAATCTCAGAATCTCAGAGTCTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAAATTGCGAAAATTTGGAAAAAAAATCATCTTTTTCAATATTTTCAATAAAAGTACAGTAATCTTCACAGGATACGGTAACTCTTYTGTAGCTACAGTAAGTCTTCAAAAAACCGAAAATTTGATCTCCCTCAAAAGGAGAGAGAGAGAGAGAAATCTCTGAAAACATTGAAAATTCAGAAAGTTTCTGAAAATCAATAGATTCTAAAAATCTGAAAATCTGGAAATTTTTCAAAATTTCAGAGTTTCAGGATCTCATATTCTCAGAGTCTGAGAATCTCAGAACTTCAAATTTTCAGAATCTTAGAATCTCAATCTCAGAATTCCGTCAAAAATCGAAATGTTCTAATTTTCAATTTTCCATGACATCATTCAACAATAATTGGGTGAATGTTGTTTGGTCAAGTGTTCAAAACCTAATTGATCAAATTCGTGAGAAAAGAGAAAAAACACAGAAATCAAAAAACGAAATGTCACCTAGATCAGCTGACGATTCGTTAAAAACGGGGATCAGAGGGAAATGATTCAAAGGCGCATCGTCAGTACCAGCAGCCAAAGTTCTATGCGCCTTTAAAGGAGGCGAGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTTGAACGAAATTTCAGAAT</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTGAGGGAGATCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>454</pcr_amplicon_size>
		<canonical_amplicon>GACTTGAACGAAATTTCAGAATTTCAAAATTCCAGAATCTCAGGATCTTAGAATCTCAGAATCTCAGAGTCTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAAATTGCGAAAATTTGGAAAAAAAATCATCTTTTTCAATATTTTCAATAAAAGTACAGTAATCTTCACAGGATACGGTAACTCTTTTGTAGCTACAGTAAGTCTTCAAAAAACCGAAAATTTGATCTCCCTCAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>GACTTGAACGAAATTTCAGAATTTCAAAATTCCAGAATCTCAGGATCTTAGAATCTCAGAATCTCAGAGTCTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAAATTGCGAAAATTTGGAAAAAAAATCATCTTTTTCAATATTTTCAATAAAAGTACAGTAATCTTCACAGGATACGGTAACTCTTYTGTAGCTACAGTAAGTCTTCAAAAAACCGAAAATTTGATCTCCCTCAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32566</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>211680</contig_pos>
        <strand>+</strand>
        <context>GTAGCTACAG[C/T]AAGTCTTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAAGTACAGTAATCTTCACAGGATACGGTAACTCTTTTGTAGCTACAG</left_flank>
        <right_flank>AAGTCTTCAAAAAACCGAAAATTTGATCTCCCTCAAAAGGAGAGAGAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACACAAGAAAAAAATGTGATAAGCATTGAGCTAGAAAACGAAATTGAAAAAGTGATCATTCATTTTTTTTATTATGAAGAAAGGGACTTGAACGAAATTTCAGAATTTCAAAATTCCAGAATCTCAGGATCTTAGAATCTCAGAATCTCAGAGTCTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAAATTGCGAAAATTTGGAAAAAAAATCATCTTTTTCAATATTTTCAATAAAAGTACAGTAATCTTCACAGGATACGGTAACTCTTTTGTAGCTACAGTAAGTCTTCAAAAAACCGAAAATTTGATCTCCCTCAAAAGGAGAGAGAGAGAGAGAAATCTCTGAAAACATTGAAAATTCAGAAAGTTTCTGAAAATCAATAGATTCTAAAAATCTGAAAATCTGGAAATTTTTCAAAATTTCAGAGTTTCAGGATCTCATATTCTCAGAGTCTGAGAATCTCAGAACTTCAAATTTTCAGAATCTTAGAATCTCAATCTCAGAATTCCGTCAAAAATCGAAATGTTCTAATTTTCAATTTTCCATGACATCATTCAACAATAATTGGGTGAATGTTGTTTGGTCAAGTGTTCAAAACCTAATTGATCAAATTCGTGAGAAAAGAGAAAAAACACAGAAATCAAAAAACGAAATGTCACCTAGATCAGCTGACGATTCGTTAAAAACGGGGATCAGAGGGAAATGATTCAAAGGCGCATCGTCAGTACCAGCAGCCAAAGTTCTATGCGCCTTTAAAGGAGGCGAGACAGCAAAAATTTTG</canonical>
            <polymorphic>ACACACAAGAAAAAAATGTGATAAGCATTGAGCTAGAAAACGAAATTGAAAAAGTGATCATTCATTTTTTTTATTATGAAGAAAGGGACTTGAACGAAATTTCAGAATTTCAAAATTCCAGAATCTCAGGATCTTAGAATCTCAGAATCTCAGAGTCTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAAATTGCGAAAATTTGGAAAAAAAATCATCTTTTTCAATATTTTCAATAAAAGTACAGTAATCTTCACAGGATACGGTAACTCTTTTGTAGCTACAGYAAGTCTTCAAAAAACCGAAAATTTGATCTCCCTCAAAAGGAGAGAGAGAGAGAGAAATCTCTGAAAACATTGAAAATTCAGAAAGTTTCTGAAAATCAATAGATTCTAAAAATCTGAAAATCTGGAAATTTTTCAAAATTTCAGAGTTTCAGGATCTCATATTCTCAGAGTCTGAGAATCTCAGAACTTCAAATTTTCAGAATCTTAGAATCTCAATCTCAGAATTCCGTCAAAAATCGAAATGTTCTAATTTTCAATTTTCCATGACATCATTCAACAATAATTGGGTGAATGTTGTTTGGTCAAGTGTTCAAAACCTAATTGATCAAATTCGTGAGAAAAGAGAAAAAACACAGAAATCAAAAAACGAAATGTCACCTAGATCAGCTGACGATTCGTTAAAAACGGGGATCAGAGGGAAATGATTCAAAGGCGCATCGTCAGTACCAGCAGCCAAAGTTCTATGCGCCTTTAAAGGAGGCGAGACAGCAAAAATTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>502 459 20 19</canonical_bands>
                <polymorphic_bands>522 459 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTTGAACGAAATTTCAGAAT</pcr_primer_p1>
		<pcr_primer_p2>CTCTCTCTCTCTCTCCTTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>468</pcr_amplicon_size>
		<canonical_amplicon>GACTTGAACGAAATTTCAGAATTTCAAAATTCCAGAATCTCAGGATCTTAGAATCTCAGAATCTCAGAGTCTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAAATTGCGAAAATTTGGAAAAAAAATCATCTTTTTCAATATTTTCAATAAAAGTACAGTAATCTTCACAGGATACGGTAACTCTTTTGTAGCTACAGTAAGTCTTCAAAAAACCGAAAATTTGATCTCCCTCAAAAGGAGAGAGAGAGAGAG</canonical_amplicon>
		<polymorphic_amplicon>GACTTGAACGAAATTTCAGAATTTCAAAATTCCAGAATCTCAGGATCTTAGAATCTCAGAATCTCAGAGTCTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAACTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAAATTGCGAAAATTTGGAAAAAAAATCATCTTTTTCAATATTTTCAATAAAAGTACAGTAATCTTCACAGGATACGGTAACTCTTTTGTAGCTACAGYAAGTCTTCAAAAAACCGAAAATTTGATCTCCCTCAAAAGGAGAGAGAGAGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32567</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>212689</contig_pos>
        <strand></strand>
        <context>atagctttta[A/G]aggaactgag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATATTATGGGCAACATTTTGTCAGTTGACAAATTTTAAATAGCTTTTA</left_flank>
        <right_flank>AGGAACTGAGATAATTGAGCTCAAAGTGATCAGTAGCTAGATTCTAGATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGGGGGACGAAATCGCGCCGCGCTTATGTAGACCATCGGTCGTCAGGCGCCTTCGCGCCCCCGTAGCCCAGTCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCATGAGTTCAACCCCTCATGGGGGTTCTCTATGCAAAATATCAGGAAAACTTTTTTTTTTGGTGTCTGGCCTCCTTTAAAGTTTCTAAAGAGCTATGGAAATTTTCGACCAATCAACACTAGTGGGATCATCTCAGGAACTACAGTACCCATTTTTGCAAGTATTCACGTTTTCAGCATTTCAAGTAGTATCATCTTGTAGCCCTTAAGTTTTTCTACCGTATCCAATTTTTGTAGACCAAGAACGTTGCTCTTAAAAGTCGCCACTCTACACGTTGACTTTGAGCTCATTTATCTCGGTTACTGTAGGAGCCATCAAAAATTTTCAGACTACAAAAATATTGAGAATATTATGGGCAACATTTTGTCAGTTGACAAATTTTAAATAGCTTTTAAAGGAACTGAGATAATTGAGCTCAAAGTGATCAGTAGCTAGATTCTAGATTTTCTTGCAAAACTTCTAGAGTCTTCTGAGCTACCGTACTCCCACCTCTGCCAAAAGCAACTCCAGAAACTACCGTACCTCCACCGAGGACTTTTGCATCATCGTCACGGCACATTTGATTCCAAACTATGTATTTAGCATTTGCACTTTTGTCCTTTGTTCCTGCAGTAGCAGACAGGTGACTCATTGGCACTGTGCCAGCCAATGTTTTCGAATCGTTTCGAAAAGAAATTGGCGCAAAAAAAGAGAGGGAGCGAGAGACGATTGTCATTTTCCTTTGCGACACATTGTGTCACATTTCATGGCCATATGTGCCCTTTTGCTAGGGAGGTGTGACGTCACTGTCAGTGGTGCCGGTCGGGGTGCCAGGTTAAAAAGTGCAATTAATGGGTGTGGGAGGCCGAGGAATGGTGCAAATGAGGACTACGTCATCAGGAGGGAGGGACAAGTA</canonical>
            <polymorphic>TCGGGGGACGAAATCGCGCCGCGCTTATGTAGACCATCGGTCGTCAGGCGCCTTCGCGCCCCCGTAGCCCAGTCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCATGAGTTCAACCCCTCATGGGGGTTCTCTATGCAAAATATCAGGAAAACTTTTTTTTTTGGTGTCTGGCCTCCTTTAAAGTTTCTAAAGAGCTATGGAAATTTTCGACCAATCAACACTAGTGGGATCATCTCAGGAACTACAGTACCCATTTTTGCAAGTATTCACGTTTTCAGCATTTCAAGTAGTATCATCTTGTAGCCCTTAAGTTTTTCTACCGTATCCAATTTTTGTAGACCAAGAACGTTGCTCTTAAAAGTCGCCACTCTACACGTTGACTTTGAGCTCATTTATCTCGGTTACTGTAGGAGCCATCAAAAATTTTCAGACTACAAAAATATTGAGAATATTATGGGCAACATTTTGTCAGTTGACAAATTTTAAATAGCTTTTARAGGAACTGAGATAATTGAGCTCAAAGTGATCAGTAGCTAGATTCTAGATTTTCTTGCAAAACTTCTAGAGTCTTCTGAGCTACCGTACTCCCACCTCTGCCAAAAGCAACTCCAGAAACTACCGTACCTCCACCGAGGACTTTTGCATCATCGTCACGGCACATTTGATTCCAAACTATGTATTTAGCATTTGCACTTTTGTCCTTTGTTCCTGCAGTAGCAGACAGGTGACTCATTGGCACTGTGCCAGCCAATGTTTTCGAATCGTTTCGAAAAGAAATTGGCGCAAAAAAAGAGAGGGAGCGAGAGACGATTGTCATTTTCCTTTGCGACACATTGTGTCACATTTCATGGCCATATGTGCCCTTTTGCTAGGGAGGTGTGACGTCACTGTCAGTGGTGCCGGTCGGGGTGCCAGGTTAAAAAGTGCAATTAATGGGTGTGGGAGGCCGAGGAATGGTGCAAATGAGGACTACGTCATCAGGAGGGAGGGACAAGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 305 182 11</canonical_bands>
                <polymorphic_bands>513 305 182</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>423 181 129 128 67 48 13 11</canonical_bands>
                <polymorphic_bands>434 181 129 128 67 48 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGCAAGTATTCACGTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTACGGTAGCTCAGAAGACTCTA</pcr_primer_p2>
		<pcr_amplicon_size>331</pcr_amplicon_size>
		<canonical_amplicon>TTTTGCAAGTATTCACGTTTTCAGCATTTCAAGTAGTATCATCTTGTAGCCCTTAAGTTTTTCTACCGTATCCAATTTTTGTAGACCAAGAACGTTGCTCTTAAAAGTCGCCACTCTACACGTTGACTTTGAGCTCATTTATCTCGGTTACTGTAGGAGCCATCAAAAATTTTCAGACTACAAAAATATTGAGAATATTATGGGCAACATTTTGTCAGTTGACAAATTTTAAATAGCTTTTAAAGGAACTGAGATAATTGAGCTCAAAGTGATCAGTAGCTAGATTCTAGATTTTCTTGCAAAACTTCTAGAGTCTTCTGAGCTACCGTAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGCAAGTATTCACGTTTTCAGCATTTCAAGTAGTATCATCTTGTAGCCCTTAAGTTTTTCTACCGTATCCAATTTTTGTAGACCAAGAACGTTGCTCTTAAAAGTCGCCACTCTACACGTTGACTTTGAGCTCATTTATCTCGGTTACTGTAGGAGCCATCAAAAATTTTCAGACTACAAAAATATTGAGAATATTATGGGCAACATTTTGTCAGTTGACAAATTTTAAATAGCTTTTARAGGAACTGAGATAATTGAGCTCAAAGTGATCAGTAGCTAGATTCTAGATTTTCTTGCAAAACTTCTAGAGTCTTCTGAGCTACCGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32568</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>213196</contig_pos>
        <strand></strand>
        <context>AGTAGCCGGA[A/G]TATTCGGGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGGTGCAAATGAGGACTACGTCATCAGGAGGGAGGGACAAGTAGCCGGA</left_flank>
        <right_flank>TATTCGGGAGATTGGAGGGTGGAATGAGGGATTGATTTCAGAATGCCAAT</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGATAATTGAGCTCAAAGTGATCAGTAGCTAGATTCTAGATTTTCTTGCAAAACTTCTAGAGTCTTCTGAGCTACCGTACTCCCACCTCTGCCAAAAGCAACTCCAGAAACTACCGTACCTCCACCGAGGACTTTTGCATCATCGTCACGGCACATTTGATTCCAAACTATGTATTTAGCATTTGCACTTTTGTCCTTTGTTCCTGCAGTAGCAGACAGGTGACTCATTGGCACTGTGCCAGCCAATGTTTTCGAATCGTTTCGAAAAGAAATTGGCGCAAAAAAAGAGAGGGAGCGAGAGACGATTGTCATTTTCCTTTGCGACACATTGTGTCACATTTCATGGCCATATGTGCCCTTTTGCTAGGGAGGTGTGACGTCACTGTCAGTGGTGCCGGTCGGGGTGCCAGGTTAAAAAGTGCAATTAATGGGTGTGGGAGGCCGAGGAATGGTGCAAATGAGGACTACGTCATCAGGAGGGAGGGACAAGTAGCCGGAATATTCGGGAGATTGGAGGGTGGAATGAGGGATTGATTTCAGAATGCCAATCAACCCCGTCCATTTTGATACCAGATATCTCGGCTCCTGTGAGAGATATCAAAAAGATGTCAACTGACAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTGACCACTTTTTGATACCTTCTACGGGAATCAAGATAAATTGGCTCAAAGGTAAAAGTTATAGGAGTCATTGAATGATACTAGACTATTTACGGTATACTTGTAAATCGACCCATAACTCGGCTCAAACTTTGAATTTCAGTTTGAATAAAAAAGTAAAATATAGAAATTGGAAATCTCTACAAAATGATATTAAATTCGACTATATCGAAACAGCGAGTTTAGAACTAGAAGCTGTGAAACAGTCGGGTTGGCCAGAGCGGCCCGGCAGTGACTCGCCCCGCTTGACGTTGCATAACTCGGCTGAAACTTGAAATTTCTTCTGGAATTAAAAAGTAAAATTTAG</canonical>
            <polymorphic>GAGATAATTGAGCTCAAAGTGATCAGTAGCTAGATTCTAGATTTTCTTGCAAAACTTCTAGAGTCTTCTGAGCTACCGTACTCCCACCTCTGCCAAAAGCAACTCCAGAAACTACCGTACCTCCACCGAGGACTTTTGCATCATCGTCACGGCACATTTGATTCCAAACTATGTATTTAGCATTTGCACTTTTGTCCTTTGTTCCTGCAGTAGCAGACAGGTGACTCATTGGCACTGTGCCAGCCAATGTTTTCGAATCGTTTCGAAAAGAAATTGGCGCAAAAAAAGAGAGGGAGCGAGAGACGATTGTCATTTTCCTTTGCGACACATTGTGTCACATTTCATGGCCATATGTGCCCTTTTGCTAGGGAGGTGTGACGTCACTGTCAGTGGTGCCGGTCGGGGTGCCAGGTTAAAAAGTGCAATTAATGGGTGTGGGAGGCCGAGGAATGGTGCAAATGAGGACTACGTCATCAGGAGGGAGGGACAAGTAGCCGGARTATTCGGGAGATTGGAGGGTGGAATGAGGGATTGATTTCAGAATGCCAATCAACCCCGTCCATTTTGATACCAGATATCTCGGCTCCTGTGAGAGATATCAAAAAGATGTCAACTGACAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTGACCACTTTTTGATACCTTCTACGGGAATCAAGATAAATTGGCTCAAAGGTAAAAGTTATAGGAGTCATTGAATGATACTAGACTATTTACGGTATACTTGTAAATCGACCCATAACTCGGCTCAAACTTTGAATTTCAGTTTGAATAAAAAAGTAAAATATAGAAATTGGAAATCTCTACAAAATGATATTAAATTCGACTATATCGAAACAGCGAGTTTAGAACTAGAAGCTGTGAAACAGTCGGGTTGGCCAGAGCGGCCCGGCAGTGACTCGCCCCGCTTGACGTTGCATAACTCGGCTGAAACTTGAAATTTCTTCTGGAATTAAAAAGTAAAATTTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGTGCAATTAATGGGTGT</pcr_primer_p1>
		<pcr_primer_p2>GTTGATTGGCATTCTGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>139</pcr_amplicon_size>
		<canonical_amplicon>AAAAGTGCAATTAATGGGTGTGGGAGGCCGAGGAATGGTGCAAATGAGGACTACGTCATCAGGAGGGAGGGACAAGTAGCCGGAATATTCGGGAGATTGGAGGGTGGAATGAGGGATTGATTTCAGAATGCCAATCAAC</canonical_amplicon>
		<polymorphic_amplicon>AAAAGTGCAATTAATGGGTGTGGGAGGCCGAGGAATGGTGCAAATGAGGACTACGTCATCAGGAGGGAGGGACAAGTAGCCGGARTATTCGGGAGATTGGAGGGTGGAATGAGGGATTGATTTCAGAATGCCAATCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32569</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>214878</contig_pos>
        <strand>+</strand>
        <context>GCGTTTGCCG[A/G]AAAAAAAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCGCTCTATTGATAACTACAGAGGGGAGTCCAATAGAGCGCGTTTGCCG</left_flank>
        <right_flank>AAAAAAAATCGAATAATCAGGGCTTAAAATTGGAGGAAATTGAGTGGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTTATCTCGATTCCTATGAAAGATATCAAAATTTTGTCAACTGATAAAATGTTGCTGGCATTATGATAAACATTTTATCAGTTGACACCTTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTCAAAGTTGAGGGGCCCTTTTATTACAGGTTTTTCGCCACAGTAGAATTTTGAGATTTTGAAAATTCTTAAACTTTTTCGTACTACAGTAATGCCTTCCCTTCAAAACAATGTTTAAAAAATACACATCAAAATCCACATTTTTATTGCTATAAATAAGTCAGAAAACTACTATATTTTTGAATGAATAAGATAAATCCAAAAATAGGAAGAAGAATTATTTTTCAGAGCCAAATCTAGCACAAAAACCATAAATATGGTGGGCGGGGGGGGGGGGACATAAAAGAAGAGAGGAGGAGAAAAAAGGGGGAAAGCTGAATGTGCGCTCTATTGATAACTACAGAGGGGAGTCCAATAGAGCGCGTTTGCCGAAAAAAAAATCGAATAATCAGGGCTTAAAATTGGAGGAAATTGAGTGGAGAAAAATAAATAAAAAAATTACATTTTTATAATGAATTTGGGCCTTGAAAAAGAGCCAAAAAAGTGAATTTTTTGGAAATTTTCTACATGAACATTTTAATAATTTAAGTCAAAAAAAATCTGGAATTTTCTAGGATTCTGGAATTTTCCAGAATTTTTTCTAGTACAAATTCGAGAGATTCTCGATTTTCTGAAGGAGTGTCGAGACACGATACTCGGGTTCACACTGTCGTGCCGATTCGATGAGCTCCAGAAGATGTTTGATGCCGACGCCGAATCTGAAATTTTGTCAAAAAAGTATAAATTGCAAAAGAAATCTGAATGTGAAAAACAAATATTCTGAAATTTTGAGATTCTGAGATTCTGGAATTTAGGGATCTTGAATTTCTGAAAATCTGAATTTCTGGAATTCTGAATTTCAGAAATTTTCGAGATTCTGAGATTCCAAGATT</canonical>
            <polymorphic>CATTTTATCTCGATTCCTATGAAAGATATCAAAATTTTGTCAACTGATAAAATGTTGCTGGCATTATGATAAACATTTTATCAGTTGACACCTTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTCAAAGTTGAGGGGCCCTTTTATTACAGGTTTTTCGCCACAGTAGAATTTTGAGATTTTGAAAATTCTTAAACTTTTTCGTACTACAGTAATGCCTTCCCTTCAAAACAATGTTTAAAAAATACACATCAAAATCCACATTTTTATTGCTATAAATAAGTCAGAAAACTACTATATTTTTGAATGAATAAGATAAATCCAAAAATAGGAAGAAGAATTATTTTTCAGAGCCAAATCTAGCACAAAAACCATAAATATGGTGGGCGGGGGGGGGGGGACATAAAAGAAGAGAGGAGGAGAAAAAAGGGGGAAAGCTGAATGTGCGCTCTATTGATAACTACAGAGGGGAGTCCAATAGAGCGCGTTTGCCGRAAAAAAAATCGAATAATCAGGGCTTAAAATTGGAGGAAATTGAGTGGAGAAAAATAAATAAAAAAATTACATTTTTATAATGAATTTGGGCCTTGAAAAAGAGCCAAAAAAGTGAATTTTTTGGAAATTTTCTACATGAACATTTTAATAATTTAAGTCAAAAAAAATCTGGAATTTTCTAGGATTCTGGAATTTTCCAGAATTTTTTCTAGTACAAATTCGAGAGATTCTCGATTTTCTGAAGGAGTGTCGAGACACGATACTCGGGTTCACACTGTCGTGCCGATTCGATGAGCTCCAGAAGATGTTTGATGCCGACGCCGAATCTGAAATTTTGTCAAAAAAGTATAAATTGCAAAAGAAATCTGAATGTGAAAAACAAATATTCTGAAATTTTGAGATTCTGAGATTCTGGAATTTAGGGATCTTGAATTTCTGAAAATCTGAATTTCTGGAATTCTGAATTTCAGAAATTTTCGAGATTCTGAGATTCCAAGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTGCGCTCTATTGATAACTAC</pcr_primer_p1>
		<pcr_primer_p2>TGGAAAATTCCAGAATCCTA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ATGTGCGCTCTATTGATAACTACAGAGGGGAGTCCAATAGAGCGCGTTTGCCGAAAAAAAAATCGAATAATCAGGGCTTAAAATTGGAGGAAATTGAGTGGAGAAAAATAAATAAAAAAATTACATTTTTATAATGAATTTGGGCCTTGAAAAAGAGCCAAAAAAGTGAATTTTTTGGAAATTTTCTACATGAACATTTTAATAATTTAAGTCAAAAAAAATCTGGAATTTTCTAGGATTCTGGAATTTTCCA</canonical_amplicon>
		<polymorphic_amplicon>ATGTGCGCTCTATTGATAACTACAGAGGGGAGTCCAATAGAGCGCGTTTGCCGRAAAAAAAATCGAATAATCAGGGCTTAAAATTGGAGGAAATTGAGTGGAGAAAAATAAATAAAAAAATTACATTTTTATAATGAATTTGGGCCTTGAAAAAGAGCCAAAAAAGTGAATTTTTTGGAAATTTTCTACATGAACATTTTAATAATTTAAGTCAAAAAAAATCTGGAATTTTCTAGGATTCTGGAATTTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32570</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>215038</contig_pos>
        <strand>+</strand>
        <context>AATTTAAGTC[A/G]AAAAAAATCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTGAATTTTTTGGAAATTTTCTACATGAACATTTTAATAATTTAAGTC</left_flank>
        <right_flank>AAAAAAATCTGGAATTTTCTAGGATTCTGGAATTTTCCAGAATTTTTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGCCACAGTAGAATTTTGAGATTTTGAAAATTCTTAAACTTTTTCGTACTACAGTAATGCCTTCCCTTCAAAACAATGTTTAAAAAATACACATCAAAATCCACATTTTTATTGCTATAAATAAGTCAGAAAACTACTATATTTTTGAATGAATAAGATAAATCCAAAAATAGGAAGAAGAATTATTTTTCAGAGCCAAATCTAGCACAAAAACCATAAATATGGTGGGCGGGGGGGGGGGGACATAAAAGAAGAGAGGAGGAGAAAAAAGGGGGAAAGCTGAATGTGCGCTCTATTGATAACTACAGAGGGGAGTCCAATAGAGCGCGTTTGCCGAAAAAAAAATCGAATAATCAGGGCTTAAAATTGGAGGAAATTGAGTGGAGAAAAATAAATAAAAAAATTACATTTTTATAATGAATTTGGGCCTTGAAAAAGAGCCAAAAAAGTGAATTTTTTGGAAATTTTCTACATGAACATTTTAATAATTTAAGTCAAAAAAAATCTGGAATTTTCTAGGATTCTGGAATTTTCCAGAATTTTTTCTAGTACAAATTCGAGAGATTCTCGATTTTCTGAAGGAGTGTCGAGACACGATACTCGGGTTCACACTGTCGTGCCGATTCGATGAGCTCCAGAAGATGTTTGATGCCGACGCCGAATCTGAAATTTTGTCAAAAAAGTATAAATTGCAAAAGAAATCTGAATGTGAAAAACAAATATTCTGAAATTTTGAGATTCTGAGATTCTGGAATTTAGGGATCTTGAATTTCTGAAAATCTGAATTTCTGGAATTCTGAATTTCAGAAATTTTCGAGATTCTGAGATTCCAAGATTATGAGACTCTGAGGATCTGAAAATCCGAGATTCCAAAATTCTGGGATTCTATTTTGAGATTTTTAGACATTCAGATTTTCAGATTCCGAATTTCTGAAATTCTGAAAATCCGAGATTCTAAAATTCTGGGATTCTAAAGTGTTGAGTATCTGAAATTCCG</canonical>
            <polymorphic>TTTCGCCACAGTAGAATTTTGAGATTTTGAAAATTCTTAAACTTTTTCGTACTACAGTAATGCCTTCCCTTCAAAACAATGTTTAAAAAATACACATCAAAATCCACATTTTTATTGCTATAAATAAGTCAGAAAACTACTATATTTTTGAATGAATAAGATAAATCCAAAAATAGGAAGAAGAATTATTTTTCAGAGCCAAATCTAGCACAAAAACCATAAATATGGTGGGCGGGGGGGGGGGGACATAAAAGAAGAGAGGAGGAGAAAAAAGGGGGAAAGCTGAATGTGCGCTCTATTGATAACTACAGAGGGGAGTCCAATAGAGCGCGTTTGCCGAAAAAAAAATCGAATAATCAGGGCTTAAAATTGGAGGAAATTGAGTGGAGAAAAATAAATAAAAAAATTACATTTTTATAATGAATTTGGGCCTTGAAAAAGAGCCAAAAAAGTGAATTTTTTGGAAATTTTCTACATGAACATTTTAATAATTTAAGTCRAAAAAAATCTGGAATTTTCTAGGATTCTGGAATTTTCCAGAATTTTTTCTAGTACAAATTCGAGAGATTCTCGATTTTCTGAAGGAGTGTCGAGACACGATACTCGGGTTCACACTGTCGTGCCGATTCGATGAGCTCCAGAAGATGTTTGATGCCGACGCCGAATCTGAAATTTTGTCAAAAAAGTATAAATTGCAAAAGAAATCTGAATGTGAAAAACAAATATTCTGAAATTTTGAGATTCTGAGATTCTGGAATTTAGGGATCTTGAATTTCTGAAAATCTGAATTTCTGGAATTCTGAATTTCAGAAATTTTCGAGATTCTGAGATTCCAAGATTATGAGACTCTGAGGATCTGAAAATCCGAGATTCCAAAATTCTGGGATTCTATTTTGAGATTTTTAGACATTCAGATTTTCAGATTCCGAATTTCTGAAATTCTGAAAATCCGAGATTCTAAAATTCTGGGATTCTAAAGTGTTGAGTATCTGAAATTCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCGAATAATCAGGGCTTA</pcr_primer_p1>
		<pcr_primer_p2>CTCGACACTCCTTCAGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATCGAATAATCAGGGCTTAAAATTGGAGGAAATTGAGTGGAGAAAAATAAATAAAAAAATTACATTTTTATAATGAATTTGGGCCTTGAAAAAGAGCCAAAAAAGTGAATTTTTTGGAAATTTTCTACATGAACATTTTAATAATTTAAGTCAAAAAAAATCTGGAATTTTCTAGGATTCTGGAATTTTCCAGAATTTTTTCTAGTACAAATTCGAGAGATTCTCGATTTTCTGAAGGAGTGTCGAG</canonical_amplicon>
		<polymorphic_amplicon>AAATCGAATAATCAGGGCTTAAAATTGGAGGAAATTGAGTGGAGAAAAATAAATAAAAAAATTACATTTTTATAATGAATTTGGGCCTTGAAAAAGAGCCAAAAAAGTGAATTTTTTGGAAATTTTCTACATGAACATTTTAATAATTTAAGTCRAAAAAAATCTGGAATTTTCTAGGATTCTGGAATTTTCCAGAATTTTTTCTAGTACAAATTCGAGAGATTCTCGATTTTCTGAAGGAGTGTCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32571</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>215297</contig_pos>
        <strand></strand>
        <context>attctggaat[T/A]tagggatctt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATGTGAAAAACAAATATTCTGAAATTTTGAGATTCTGAGATTCTGGAAT</left_flank>
        <right_flank>TAGGGATCTTGAATTTCTGAAAATCTGAATTTCTGGAATTCTGAATTTCA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAGGAGAAAAAAGGGGGAAAGCTGAATGTGCGCTCTATTGATAACTACAGAGGGGAGTCCAATAGAGCGCGTTTGCCGAAAAAAAAATCGAATAATCAGGGCTTAAAATTGGAGGAAATTGAGTGGAGAAAAATAAATAAAAAAATTACATTTTTATAATGAATTTGGGCCTTGAAAAAGAGCCAAAAAAGTGAATTTTTTGGAAATTTTCTACATGAACATTTTAATAATTTAAGTCAAAAAAAATCTGGAATTTTCTAGGATTCTGGAATTTTCCAGAATTTTTTCTAGTACAAATTCGAGAGATTCTCGATTTTCTGAAGGAGTGTCGAGACACGATACTCGGGTTCACACTGTCGTGCCGATTCGATGAGCTCCAGAAGATGTTTGATGCCGACGCCGAATCTGAAATTTTGTCAAAAAAGTATAAATTGCAAAAGAAATCTGAATGTGAAAAACAAATATTCTGAAATTTTGAGATTCTGAGATTCTGGAATTTAGGGATCTTGAATTTCTGAAAATCTGAATTTCTGGAATTCTGAATTTCAGAAATTTTCGAGATTCTGAGATTCCAAGATTATGAGACTCTGAGGATCTGAAAATCCGAGATTCCAAAATTCTGGGATTCTATTTTGAGATTTTTAGACATTCAGATTTTCAGATTCCGAATTTCTGAAATTCTGAAAATCCGAGATTCTAAAATTCTGGGATTCTAAAGTGTTGAGTATCTGAAATTCCGGAATTTTGAAATTCTGAAATTTTCGAGATTCTGAAATTCCAAGGTTATGAGACTCTGTGAATCTGAAATTCTGAAATTCAGCAATTCCAAAATTCTGGGATTCTGGGATTCTGAAAATCCGAGATTCTAAAATTTTTGAGATTCTGAAATCCTGAAATTCAGGAATTTCAAAATTCTGAGATTCTGGAATTTCAAAATTCTGAGATTCTGGAATTCCGAATTGTTGAGAATCTGAAATTCCGAAAAATCGAAATTCTGG</canonical>
            <polymorphic>AGGAGGAGAAAAAAGGGGGAAAGCTGAATGTGCGCTCTATTGATAACTACAGAGGGGAGTCCAATAGAGCGCGTTTGCCGAAAAAAAAATCGAATAATCAGGGCTTAAAATTGGAGGAAATTGAGTGGAGAAAAATAAATAAAAAAATTACATTTTTATAATGAATTTGGGCCTTGAAAAAGAGCCAAAAAAGTGAATTTTTTGGAAATTTTCTACATGAACATTTTAATAATTTAAGTCAAAAAAAATCTGGAATTTTCTAGGATTCTGGAATTTTCCAGAATTTTTTCTAGTACAAATTCGAGAGATTCTCGATTTTCTGAAGGAGTGTCGAGACACGATACTCGGGTTCACACTGTCGTGCCGATTCGATGAGCTCCAGAAGATGTTTGATGCCGACGCCGAATCTGAAATTTTGTCAAAAAAGTATAAATTGCAAAAGAAATCTGAATGTGAAAAACAAATATTCTGAAATTTTGAGATTCTGAGATTCTGGAATWTAGGGATCTTGAATTTCTGAAAATCTGAATTTCTGGAATTCTGAATTTCAGAAATTTTCGAGATTCTGAGATTCCAAGATTATGAGACTCTGAGGATCTGAAAATCCGAGATTCCAAAATTCTGGGATTCTATTTTGAGATTTTTAGACATTCAGATTTTCAGATTCCGAATTTCTGAAATTCTGAAAATCCGAGATTCTAAAATTCTGGGATTCTAAAGTGTTGAGTATCTGAAATTCCGGAATTTTGAAATTCTGAAATTTTCGAGATTCTGAAATTCCAAGGTTATGAGACTCTGTGAATCTGAAATTCTGAAATTCAGCAATTCCAAAATTCTGGGATTCTGGGATTCTGAAAATCCGAGATTCTAAAATTTTTGAGATTCTGAAATCCTGAAATTCAGGAATTTCAAAATTCTGAGATTCTGGAATTTCAAAATTCTGAGATTCTGGAATTCCGAATTGTTGAGAATCTGAAATTCCGAAAAATCGAAATTCTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>163 114 65 61 52 47 40 32 32 32 25 24 24 24 18 17 16 16 16 16 16 16 15 11 10 9 9 9 8 8 8 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>163 114 65 61 52 47 40 39 32 32 32 25 24 24 18 17 16 16 16 16 16 16 11 10 9 9 9 8 8 8 8 8 8 8 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>114 108 65 52 41 40 32 32 32 27 25 24 24 24 23 20 18 18 17 17 16 16 16 16 16 15 11 10 10 9 9 9 8 8 8 8 8 8 8 8 8 8 7 7</canonical_bands>
                <polymorphic_bands>114 108 65 52 41 40 39 32 32 32 27 25 24 24 23 20 18 18 17 17 16 16 16 16 16 11 10 10 9 9 9 8 8 8 8 8 8 8 8 8 8 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAAATCTGAATGTGAAAAACA</pcr_primer_p1>
		<pcr_primer_p2>GATTTTTGCTTGAATGAATAATTT</pcr_primer_p2>
		<pcr_amplicon_size>807</pcr_amplicon_size>
		<canonical_amplicon>AAGAAATCTGAATGTGAAAAACAAATATTCTGAAATTTTGAGATTCTGAGATTCTGGAATTTAGGGATCTTGAATTTCTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAGAAATCTGAATGTGAAAAACAAATATTCTGAAATTTTGAGATTCTGAGATTCTGGAATWTAGGGATCTTGAATTTCTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32572</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>232203</contig_pos>
        <strand>+</strand>
        <context>ACTATGAAAA[A/T]WGGAGATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCTGCCGGCCCGCAATCTGCCCAGGACGGCCTGTTTGCAACTATGAAAA</left_flank>
        <right_flank>AGGAGATTTTGACTCTTAGAGTACGCTTTTCCTCTCGAAAAATCGTTGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACCCCTACAGCGATAACTACTCTGGCTCCGGTGCTGCCACCGGCGATACCAACGATTCCGTACGTCTAAAAACGTTTTCCAGCAAACTTTCTTGGCGGGGTTTTAACGATTTTTCCAATTTTTTTAGTATAAAAGAACCCCCCGGGCAGTTTTTATGGTCGTTTTTCGTATGCGTTATCGTACTCAAAAAAGTACGAATAAGCACGTCCGAAAATGGCTGGGCTTGTTCGAACTTGTCTGGTCCAGATCTAGCACAAAAATAGGCATAGTTGCAAACGGGCCGACCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAACAAGATATTTTGACGGATTTGATGTCAAATGATAGATCTCGACGAGGTCCATCTTAGCTATGCCACACGGGCCGGGCTNNNNNNNNNNNNATCCGTCAAAATATCTTGTTCTGAAGCCGAGTTATCTGCCGGCCCGCAATCTGCCCAGGACGGCCTGTTTGCAACTATGAAAATAGGAGATTTTGACTCTTAGAGTACGCTTTTCCTCTCGAAAAATCGTTGTTTTCCAGAGCCAACAATTCGGATGGGCCAGCCAATGGACTCAGCCGGCATCGGCGACGTCGCAAGGAGCTGGAGGGGTAAGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGGCTTTTTTCAGTGTTTTAGTGGCAAAAATTAGCCGAAAAGGACTGTTTTTGACTCGAGTTTTGCGAATTTTAGGCCTCTTTTCCCTTAGTTTGTTGTTGGGAAAATGGGAATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCATAGAATGCTCAAAAATCGAGTTTTGGTTCATTTTTCCTGATTTTTGAACCACTTTTCATGAATTTTGAACCATTTTTCACGAATTTTGGGTCGTTTTTCATGAATTTTGGACGATTTTTCAGTATTTAGGACCATTTTTCCTGAATTTCGGTTTATATTTCATGAATTTCTTACTATTTACTAT</canonical>
            <polymorphic>TACCCCTACAGCGATAACTACTCTGGCTCCGGTGCTGCCACCGGCGATACCAACGATTCCGTACGTCTAAAAACGTTTTCCAGCAAACTTTCTTGGCGGGGTTTTAACGATTTTTCCAATTTTTTTAGTATAAAAGAACCCCCCGGGCAGTTTTTATGGTCGTTTTTCGTATGCGTTATCGTACTCAAAAAAGTACGAATAAGCACGTCCGAAAATGGCTGGGCTTGTTCGAACTTGTCTGGTCCAGATCTAGCACAAAAATAGGCATAGTTGCAAACGGGCCGACCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAACAAGATATTTTGACGGATTTGATGTCAAATGATAGATCTCGACGAGGTCCATCTTAGCTATGCCACACGGGCCGGGCTNNNNNNNNNNNNATCCGTCAAAATATCTTGTTCTGAAGCCGAGTTATCTGCCGGCCCGCAATCTGCCCAGGACGGCCTGTTTGCAACTATGAAAAWAGGAGATTTTGACTCTTAGAGTACGCTTTTCCTCTCGAAAAATCGTTGTTTTCCAGAGCCAACAATTCGGATGGGCCAGCCAATGGACTCAGCCGGCATCGGCGACGTCGCAAGGAGCTGGAGGGGTAAGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGGCTTTTTTCAGTGTTTTAGTGGCAAAAATTAGCCGAAAAGGACTGTTTTTGACTCGAGTTTTGCGAATTTTAGGCCTCTTTTCCCTTAGTTTGTTGTTGGGAAAATGGGAATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCATAGAATGCTCAAAAATCGAGTTTTGGTTCATTTTTCCTGATTTTTGAACCACTTTTCATGAATTTTGAACCATTTTTCACGAATTTTGGGTCGTTTTTCATGAATTTTGGACGATTTTTCAGTATTTAGGACCATTTTTCCTGAATTTCGGTTTATATTTCATGAATTTCTTACTATTTACTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCGTCAAAATATCTTGTTCT</pcr_primer_p1>
		<pcr_primer_p2>CCTAAAAATCGCTGAAAATCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCCGTCAAAATATCTTGTTCTGAAGCCGAGTTATCTGCCGGCCCGCAATCTGCCCAGGACGGCCTGTTTGCAACTATGAAAATAGGAGATTTTGACTCTTAGAGTACGCTTTTCCTCTCGAAAAATCGTTGTTTTCCAGAGCCAACAATTCGGATGGGCCAGCCAATGGACTCAGCCGGCATCGGCGACGTCGCAAGGAGCTGGAGGGGTAAGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGG</canonical_amplicon>
		<polymorphic_amplicon>ATCCGTCAAAATATCTTGTTCTGAAGCCGAGTTATCTGCCGGCCCGCAATCTGCCCAGGACGGCCTGTTTGCAACTATGAAAAWAGGAGATTTTGACTCTTAGAGTACGCTTTTCCTCTCGAAAAATCGTTGTTTTCCAGAGCCAACAATTCGGATGGGCCAGCCAATGGACTCAGCCGGCATCGGCGACGTCGCAAGGAGCTGGAGGGGTAAGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32573</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>232204</contig_pos>
        <strand>+</strand>
        <context>CTATGAAAAW[A/T]GGAGATTTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTGCCGGCCCGCAATCTGCCCAGGACGGCCTGTTTGCAACTATGAAAAT</left_flank>
        <right_flank>GGAGATTTTGACTCTTAGAGTACGCTTTTCCTCTCGAAAAATCGTTGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCCCTACAGCGATAACTACTCTGGCTCCGGTGCTGCCACCGGCGATACCAACGATTCCGTACGTCTAAAAACGTTTTCCAGCAAACTTTCTTGGCGGGGTTTTAACGATTTTTCCAATTTTTTTAGTATAAAAGAACCCCCCGGGCAGTTTTTATGGTCGTTTTTCGTATGCGTTATCGTACTCAAAAAAGTACGAATAAGCACGTCCGAAAATGGCTGGGCTTGTTCGAACTTGTCTGGTCCAGATCTAGCACAAAAATAGGCATAGTTGCAAACGGGCCGACCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAACAAGATATTTTGACGGATTTGATGTCAAATGATAGATCTCGACGAGGTCCATCTTAGCTATGCCACACGGGCCGGGCTNNNNNNNNNNNNATCCGTCAAAATATCTTGTTCTGAAGCCGAGTTATCTGCCGGCCCGCAATCTGCCCAGGACGGCCTGTTTGCAACTATGAAAATAGGAGATTTTGACTCTTAGAGTACGCTTTTCCTCTCGAAAAATCGTTGTTTTCCAGAGCCAACAATTCGGATGGGCCAGCCAATGGACTCAGCCGGCATCGGCGACGTCGCAAGGAGCTGGAGGGGTAAGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGGCTTTTTTCAGTGTTTTAGTGGCAAAAATTAGCCGAAAAGGACTGTTTTTGACTCGAGTTTTGCGAATTTTAGGCCTCTTTTCCCTTAGTTTGTTGTTGGGAAAATGGGAATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCATAGAATGCTCAAAAATCGAGTTTTGGTTCATTTTTCCTGATTTTTGAACCACTTTTCATGAATTTTGAACCATTTTTCACGAATTTTGGGTCGTTTTTCATGAATTTTGGACGATTTTTCAGTATTTAGGACCATTTTTCCTGAATTTCGGTTTATATTTCATGAATTTCTTACTATTTACTATT</canonical>
            <polymorphic>ACCCCTACAGCGATAACTACTCTGGCTCCGGTGCTGCCACCGGCGATACCAACGATTCCGTACGTCTAAAAACGTTTTCCAGCAAACTTTCTTGGCGGGGTTTTAACGATTTTTCCAATTTTTTTAGTATAAAAGAACCCCCCGGGCAGTTTTTATGGTCGTTTTTCGTATGCGTTATCGTACTCAAAAAAGTACGAATAAGCACGTCCGAAAATGGCTGGGCTTGTTCGAACTTGTCTGGTCCAGATCTAGCACAAAAATAGGCATAGTTGCAAACGGGCCGACCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAACAAGATATTTTGACGGATTTGATGTCAAATGATAGATCTCGACGAGGTCCATCTTAGCTATGCCACACGGGCCGGGCTNNNNNNNNNNNNATCCGTCAAAATATCTTGTTCTGAAGCCGAGTTATCTGCCGGCCCGCAATCTGCCCAGGACGGCCTGTTTGCAACTATGAAAATWGGAGATTTTGACTCTTAGAGTACGCTTTTCCTCTCGAAAAATCGTTGTTTTCCAGAGCCAACAATTCGGATGGGCCAGCCAATGGACTCAGCCGGCATCGGCGACGTCGCAAGGAGCTGGAGGGGTAAGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGGCTTTTTTCAGTGTTTTAGTGGCAAAAATTAGCCGAAAAGGACTGTTTTTGACTCGAGTTTTGCGAATTTTAGGCCTCTTTTCCCTTAGTTTGTTGTTGGGAAAATGGGAATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCATAGAATGCTCAAAAATCGAGTTTTGGTTCATTTTTCCTGATTTTTGAACCACTTTTCATGAATTTTGAACCATTTTTCACGAATTTTGGGTCGTTTTTCATGAATTTTGGACGATTTTTCAGTATTTAGGACCATTTTTCCTGAATTTCGGTTTATATTTCATGAATTTCTTACTATTTACTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCGTCAAAATATCTTGTTCT</pcr_primer_p1>
		<pcr_primer_p2>CCTAAAAATCGCTGAAAATCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCCGTCAAAATATCTTGTTCTGAAGCCGAGTTATCTGCCGGCCCGCAATCTGCCCAGGACGGCCTGTTTGCAACTATGAAAATAGGAGATTTTGACTCTTAGAGTACGCTTTTCCTCTCGAAAAATCGTTGTTTTCCAGAGCCAACAATTCGGATGGGCCAGCCAATGGACTCAGCCGGCATCGGCGACGTCGCAAGGAGCTGGAGGGGTAAGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGG</canonical_amplicon>
		<polymorphic_amplicon>ATCCGTCAAAATATCTTGTTCTGAAGCCGAGTTATCTGCCGGCCCGCAATCTGCCCAGGACGGCCTGTTTGCAACTATGAAAATWGGAGATTTTGACTCTTAGAGTACGCTTTTCCTCTCGAAAAATCGTTGTTTTCCAGAGCCAACAATTCGGATGGGCCAGCCAATGGACTCAGCCGGCATCGGCGACGTCGCAAGGAGCTGGAGGGGTAAGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32574</snp_id>
        <super_contig>c007600925.Contig1</super_contig>
        <contig_pos>232543</contig_pos>
        <strand>+</strand>
        <context>AATCGAGTTT[C/T]GGTTCATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTTTTTCGAAAGGCTTAAAATGGGCATAGAATGCTCAAAAATCGAGTTT</left_flank>
        <right_flank>GGTTCATTTTTCCTGATTTTTGAACCACTTTTCATGAATTTTGAACCATT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATTTGATGTCAAATGATAGATCTCGACGAGGTCCATCTTAGCTATGCCACACGGGCCGGGCTNNNNNNNNNNNNATCCGTCAAAATATCTTGTTCTGAAGCCGAGTTATCTGCCGGCCCGCAATCTGCCCAGGACGGCCTGTTTGCAACTATGAAAATAGGAGATTTTGACTCTTAGAGTACGCTTTTCCTCTCGAAAAATCGTTGTTTTCCAGAGCCAACAATTCGGATGGGCCAGCCAATGGACTCAGCCGGCATCGGCGACGTCGCAAGGAGCTGGAGGGGTAAGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGGCTTTTTTCAGTGTTTTAGTGGCAAAAATTAGCCGAAAAGGACTGTTTTTGACTCGAGTTTTGCGAATTTTAGGCCTCTTTTCCCTTAGTTTGTTGTTGGGAAAATGGGAATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCATAGAATGCTCAAAAATCGAGTTTTGGTTCATTTTTCCTGATTTTTGAACCACTTTTCATGAATTTTGAACCATTTTTCACGAATTTTGGGTCGTTTTTCATGAATTTTGGACGATTTTTCAGTATTTAGGACCATTTTTCCTGAATTTCGGTTTATATTTCATGAATTTCTTACTATTTACTATTTTTCACAAATTTCGCACCATTCTTAATGAATTTTCGGCTTTTTTTAAAATGAATTTTGAACCATTTTAATGAATTCTGAGCCATTTTTCATAAATTTCGGGTAATGTTTCATAAACTTTAGACGATTTTTTGAAATTTAGCGGGAAAAAATCGGCAAAAAGAAAATTTCAGAAGACTTTTCTAGAACCATTTTCTTCATTCTGTGTTTTTTCTTCTGAGCCTTTCAAGCAAATCCAGGAAAAATGACCCGAATTTCATGAAAAATCGACCAAAATTCATGAAAAACGACTTAAAATTCGTGAAAAATCGACCAAATTCATGAAAATGGTCTAAAATTCA</canonical>
            <polymorphic>GGATTTGATGTCAAATGATAGATCTCGACGAGGTCCATCTTAGCTATGCCACACGGGCCGGGCTNNNNNNNNNNNNATCCGTCAAAATATCTTGTTCTGAAGCCGAGTTATCTGCCGGCCCGCAATCTGCCCAGGACGGCCTGTTTGCAACTATGAAAATAGGAGATTTTGACTCTTAGAGTACGCTTTTCCTCTCGAAAAATCGTTGTTTTCCAGAGCCAACAATTCGGATGGGCCAGCCAATGGACTCAGCCGGCATCGGCGACGTCGCAAGGAGCTGGAGGGGTAAGAAAGGTGAAAGTTGAGATTTTCAGCGATTTTTAGGCTTTTTTCAGTGTTTTAGTGGCAAAAATTAGCCGAAAAGGACTGTTTTTGACTCGAGTTTTGCGAATTTTAGGCCTCTTTTCCCTTAGTTTGTTGTTGGGAAAATGGGAATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCATAGAATGCTCAAAAATCGAGTTTYGGTTCATTTTTCCTGATTTTTGAACCACTTTTCATGAATTTTGAACCATTTTTCACGAATTTTGGGTCGTTTTTCATGAATTTTGGACGATTTTTCAGTATTTAGGACCATTTTTCCTGAATTTCGGTTTATATTTCATGAATTTCTTACTATTTACTATTTTTCACAAATTTCGCACCATTCTTAATGAATTTTCGGCTTTTTTTAAAATGAATTTTGAACCATTTTAATGAATTCTGAGCCATTTTTCATAAATTTCGGGTAATGTTTCATAAACTTTAGACGATTTTTTGAAATTTAGCGGGAAAAAATCGGCAAAAAGAAAATTTCAGAAGACTTTTCTAGAACCATTTTCTTCATTCTGTGTTTTTTCTTCTGAGCCTTTCAAGCAAATCCAGGAAAAATGACCCGAATTTCATGAAAAATCGACCAAAATTCATGAAAAACGACTTAAAATTCGTGAAAAATCGACCAAATTCATGAAAATGGTCTAAAATTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTAGCCGAAAAGGACTGT</pcr_primer_p1>
		<pcr_primer_p2>AATACTGAAAAATCGTCCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AATTAGCCGAAAAGGACTGTTTTTGACTCGAGTTTTGCGAATTTTAGGCCTCTTTTCCCTTAGTTTGTTGTTGGGAAAATGGGAATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCATAGAATGCTCAAAAATCGAGTTTTGGTTCATTTTTCCTGATTTTTGAACCACTTTTCATGAATTTTGAACCATTTTTCACGAATTTTGGGTCGTTTTTCATGAATTTTGGACGATTTTTCAGTATT</canonical_amplicon>
		<polymorphic_amplicon>AATTAGCCGAAAAGGACTGTTTTTGACTCGAGTTTTGCGAATTTTAGGCCTCTTTTCCCTTAGTTTGTTGTTGGGAAAATGGGAATTTAACGGCTTCGACGTTTTTCGAAAGGCTTAAAATGGGCATAGAATGCTCAAAAATCGAGTTTYGGTTCATTTTTCCTGATTTTTGAACCACTTTTCATGAATTTTGAACCATTTTTCACGAATTTTGGGTCGTTTTTCATGAATTTTGGACGATTTTTCAGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32575</snp_id>
        <super_contig>c007600926.Contig1</super_contig>
        <contig_pos>6156</contig_pos>
        <strand>+</strand>
        <context>TACTAGACTA[G/T]TTGGATGTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGGCTCTTCTGGACTCTTCTGAAGTACAACCAATGGCTCTACTAGACTA</left_flank>
        <right_flank>TTGGATGTTCAGATGATGGCGCTTCTGGACTCATTGCAAGCTTAGATGAT</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATTAGCTGCCATCCACATGTTGTTGAACTCCGGTTTGGGAATTTGAAAAAAAGTCAACGGCACCGTCGATTTCAGATCATCATCACTAAGCTCCTTCTGGGCGTGGCACTCTGATAACGCAGCTGTCCTGTGGTTGCCTTCCACAAGAAGAGCTCTGTTGAAGGACTTTCCGGCTAAGAGAAGAATTGGATGATTGGTTGATTGGAAGAGAGCGGTTTTTGGGTGGAATAGTTTCAGGTCATCAACGCGGTTCCAATCGATGGTTCGTAAAAGTTGTCCTTTAAATTGAATCTGAAGGTATTCCTTCAGCGTCACCTCCTTTCCATAGCGTTTGAGGGGACGAAGCTGTTGGAGGGCTTCTGGAAGTGTCTGAAAACGGAAATATTCAAACTAGGCCTGGAGCAAAAAAAATTACCTGTGTCTTTGGACGATTTAGAAGTTCAGCCCATGGCTCTTCTGGACTCTTCTGAAGTACAACCAATGGCTCTACTAGACTATTTGGATGTTCAGATGATGGCGCTTCTGGACTCATTGCAAGCTTAGATGATGTATTCAAAGGCTTCAGGACTTGTCTTTGTGGTGAGAAGAATCTTGGCTTCTAAAAAATTCAACTCTTTAAAATTTGACTTCAAGTCAGAAATGCTCACCTTGACCGCCAACTCGTTTTCATCAACAGTATCGCTCGAGTATTGTCTAATTGGCACTGAACTGGTTCTCTTAGCAGAATGAATAGCACGATCTGCAGAGACTGCTGGCATGGCTCCCTATAAATTTCGAATCTCATCTAATCTGACTTCAAGTCAGATATGCAAACCTCATTTGACAACTCCTGATTGAAGTACAAACGAAGCTGAGCGATGGTGTCGCTGAATGAGGTTGGTGGAAAAGATGGAACCGATTCGCCTTGAGCGACGGTGCCGATTGGATCAACGGGCAGCATCTGAAAGAAATTTTTGAATCTCATCTAATCTGACTTCAAGTCAGATATGCAAACCTCT</canonical>
            <polymorphic>TCATTAGCTGCCATCCACATGTTGTTGAACTCCGGTTTGGGAATTTGAAAAAAAGTCAACGGCACCGTCGATTTCAGATCATCATCACTAAGCTCCTTCTGGGCGTGGCACTCTGATAACGCAGCTGTCCTGTGGTTGCCTTCCACAAGAAGAGCTCTGTTGAAGGACTTTCCGGCTAAGAGAAGAATTGGATGATTGGTTGATTGGAAGAGAGCGGTTTTTGGGTGGAATAGTTTCAGGTCATCAACGCGGTTCCAATCGATGGTTCGTAAAAGTTGTCCTTTAAATTGAATCTGAAGGTATTCCTTCAGCGTCACCTCCTTTCCATAGCGTTTGAGGGGACGAAGCTGTTGGAGGGCTTCTGGAAGTGTCTGAAAACGGAAATATTCAAACTAGGCCTGGAGCAAAAAAAATTACCTGTGTCTTTGGACGATTTAGAAGTTCAGCCCATGGCTCTTCTGGACTCTTCTGAAGTACAACCAATGGCTCTACTAGACTAKTTGGATGTTCAGATGATGGCGCTTCTGGACTCATTGCAAGCTTAGATGATGTATTCAAAGGCTTCAGGACTTGTCTTTGTGGTGAGAAGAATCTTGGCTTCTAAAAAATTCAACTCTTTAAAATTTGACTTCAAGTCAGAAATGCTCACCTTGACCGCCAACTCGTTTTCATCAACAGTATCGCTCGAGTATTGTCTAATTGGCACTGAACTGGTTCTCTTAGCAGAATGAATAGCACGATCTGCAGAGACTGCTGGCATGGCTCCCTATAAATTTCGAATCTCATCTAATCTGACTTCAAGTCAGATATGCAAACCTCATTTGACAACTCCTGATTGAAGTACAAACGAAGCTGAGCGATGGTGTCGCTGAATGAGGTTGGTGGAAAAGATGGAACCGATTCGCCTTGAGCGACGGTGCCGATTGGATCAACGGGCAGCATCTGAAAGAAATTTTTGAATCTCATCTAATCTGACTTCAAGTCAGATATGCAAACCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTGTCTGAAAACGGAAATA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTAGAAGCCAAGATTCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GAAGTGTCTGAAAACGGAAATATTCAAACTAGGCCTGGAGCAAAAAAAATTACCTGTGTCTTTGGACGATTTAGAAGTTCAGCCCATGGCTCTTCTGGACTCTTCTGAAGTACAACCAATGGCTCTACTAGACTATTTGGATGTTCAGATGATGGCGCTTCTGGACTCATTGCAAGCTTAGATGATGTATTCAAAGGCTTCAGGACTTGTCTTTGTGGTGAGAAGAATCTTGGCTTCTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAAGTGTCTGAAAACGGAAATATTCAAACTAGGCCTGGAGCAAAAAAAATTACCTGTGTCTTTGGACGATTTAGAAGTTCAGCCCATGGCTCTTCTGGACTCTTCTGAAGTACAACCAATGGCTCTACTAGACTAKTTGGATGTTCAGATGATGGCGCTTCTGGACTCATTGCAAGCTTAGATGATGTATTCAAAGGCTTCAGGACTTGTCTTTGTGGTGAGAAGAATCTTGGCTTCTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32576</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>1776</contig_pos>
        <strand></strand>
        <context>tggtccaaaa[C/T]gacctaaaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGTACCGCCCAAAATAACTGGGAATTTCCTGCTGAAAAATGGTCCAAAA</left_flank>
        <right_flank>GACCTAAAAATTCGCTAAAATAGCTTTAAATGGGCCTAAAAAGGCCTGAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATGATCTACAATGGGCTATAGTTGAGGCTATATAAATGAGCTAGAAATGGTCAAAAATAACCACGAAATGGTCTTAACTAGCTTAAAATAGTCTAAAATAGGCTAAAATGGTCCGAAAACAGCTCAAAATAGTCCCCAAAATGACTTAGAATCGCCCAAAAATAAGACTCTAAAACTGTCAAAAACTGTTCAAAATGACCAAAGTAATGTTTGAAAATCTTTTATTATTGATCCCAAAATGGCTAAAAATGGTCCAAAATGGCTTAACATGAACTAAAAAAATAGCCAGAAATTATCCAAAAATGATTTTATATGGCTTAAAATGAACCCAAAACTCATAAATAACGGTCCCCAAAACCTCGAAACACTGTCTAAAAAGGCCTAAGAAGGCCTAAAAGGGCCTAAAATCGATATTTCCAGTGCTTCTCAGCCAACCCTTCCTCATCGTGTACCGCCCAAAATAACTGGGAATTTCCTGCTGAAAAATGGTCCAAAACGACCTAAAAATTCGCTAAAATAGCTTTAAATGGGCCTAAAAAGGCCTGAAAAGGCCTAAAAATCTCAATTTCCAGTGCTTCTCAGCCACGTTCCTGGTCGTCTTCCACCCAACGGACATCCTCAAAACGCCCCTAACCGAAAAACAAGAAGAAGGCAAAGGCATCGAATTCCGCGACCCAAAAGAGTTCGAATCGCCGAACGAGGCGTGGTACTCTCGACTCACCAAATTGCTATTGCTCATGAACAAGCTACAGTACCCCAAACAGCCGCCAGACCCACGGGATTTAAAGGAGCGAGTGCCCAAATTGAAACGCGACGATTTCACGATGAAATATGTCATGGAGGCGTTTAAGGTAAAAAAAATTTTTCTAAAAAGGCCTAATAATGGCCTAATTTAGGCCTATTATTTAGGCCTAATTTAGGCCAAAACTACAGTAACCCAAAAAAATTTTGCGAAATAGCCATGAGTATACTCAACTGAAAGCTCTTGAAAGTCGAA</canonical>
            <polymorphic>AAAATGATCTACAATGGGCTATAGTTGAGGCTATATAAATGAGCTAGAAATGGTCAAAAATAACCACGAAATGGTCTTAACTAGCTTAAAATAGTCTAAAATAGGCTAAAATGGTCCGAAAACAGCTCAAAATAGTCCCCAAAATGACTTAGAATCGCCCAAAAATAAGACTCTAAAACTGTCAAAAACTGTTCAAAATGACCAAAGTAATGTTTGAAAATCTTTTATTATTGATCCCAAAATGGCTAAAAATGGTCCAAAATGGCTTAACATGAACTAAAAAAATAGCCAGAAATTATCCAAAAATGATTTTATATGGCTTAAAATGAACCCAAAACTCATAAATAACGGTCCCCAAAACCTCGAAACACTGTCTAAAAAGGCCTAAGAAGGCCTAAAAGGGCCTAAAATCGATATTTCCAGTGCTTCTCAGCCAACCCTTCCTCATCGTGTACCGCCCAAAATAACTGGGAATTTCCTGCTGAAAAATGGTCCAAAAYGACCTAAAAATTCGCTAAAATAGCTTTAAATGGGCCTAAAAAGGCCTGAAAAGGCCTAAAAATCTCAATTTCCAGTGCTTCTCAGCCACGTTCCTGGTCGTCTTCCACCCAACGGACATCCTCAAAACGCCCCTAACCGAAAAACAAGAAGAAGGCAAAGGCATCGAATTCCGCGACCCAAAAGAGTTCGAATCGCCGAACGAGGCGTGGTACTCTCGACTCACCAAATTGCTATTGCTCATGAACAAGCTACAGTACCCCAAACAGCCGCCAGACCCACGGGATTTAAAGGAGCGAGTGCCCAAATTGAAACGCGACGATTTCACGATGAAATATGTCATGGAGGCGTTTAAGGTAAAAAAAATTTTTCTAAAAAGGCCTAATAATGGCCTAATTTAGGCCTATTATTTAGGCCTAATTTAGGCCAAAACTACAGTAACCCAAAAAAATTTTGCGAAATAGCCATGAGTATACTCAACTGAAAGCTCTTGAAAGTCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATATTTCCAGTGCTTCTC</pcr_primer_p1>
		<pcr_primer_p2>CTTTGCCTTCTTCTTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGATATTTCCAGTGCTTCTCAGCCAACCCTTCCTCATCGTGTACCGCCCAAAATAACTGGGAATTTCCTGCTGAAAAATGGTCCAAAACGACCTAAAAATTCGCTAAAATAGCTTTAAATGGGCCTAAAAAGGCCTGAAAAGGCCTAAAAATCTCAATTTCCAGTGCTTCTCAGCCACGTTCCTGGTCGTCTTCCACCCAACGGACATCCTCAAAACGCCCCTAACCGAAAAACAAGAAGAAGGCAAAG</canonical_amplicon>
		<polymorphic_amplicon>CGATATTTCCAGTGCTTCTCAGCCAACCCTTCCTCATCGTGTACCGCCCAAAATAACTGGGAATTTCCTGCTGAAAAATGGTCCAAAAYGACCTAAAAATTCGCTAAAATAGCTTTAAATGGGCCTAAAAAGGCCTGAAAAGGCCTAAAAATCTCAATTTCCAGTGCTTCTCAGCCACGTTCCTGGTCGTCTTCCACCCAACGGACATCCTCAAAACGCCCCTAACCGAAAAACAAGAAGAAGGCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32577</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>1788</contig_pos>
        <strand></strand>
        <context>acctaaaaat[T/C]cgctaaaata</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAATAACTGGGAATTTCCTGCTGAAAAATGGTCCAAAACGACCTAAAAAT</left_flank>
        <right_flank>CGCTAAAATAGCTTTAAATGGGCCTAAAAAGGCCTGAAAAGGCCTAAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGGGCTATAGTTGAGGCTATATAAATGAGCTAGAAATGGTCAAAAATAACCACGAAATGGTCTTAACTAGCTTAAAATAGTCTAAAATAGGCTAAAATGGTCCGAAAACAGCTCAAAATAGTCCCCAAAATGACTTAGAATCGCCCAAAAATAAGACTCTAAAACTGTCAAAAACTGTTCAAAATGACCAAAGTAATGTTTGAAAATCTTTTATTATTGATCCCAAAATGGCTAAAAATGGTCCAAAATGGCTTAACATGAACTAAAAAAATAGCCAGAAATTATCCAAAAATGATTTTATATGGCTTAAAATGAACCCAAAACTCATAAATAACGGTCCCCAAAACCTCGAAACACTGTCTAAAAAGGCCTAAGAAGGCCTAAAAGGGCCTAAAATCGATATTTCCAGTGCTTCTCAGCCAACCCTTCCTCATCGTGTACCGCCCAAAATAACTGGGAATTTCCTGCTGAAAAATGGTCCAAAACGACCTAAAAATTCGCTAAAATAGCTTTAAATGGGCCTAAAAAGGCCTGAAAAGGCCTAAAAATCTCAATTTCCAGTGCTTCTCAGCCACGTTCCTGGTCGTCTTCCACCCAACGGACATCCTCAAAACGCCCCTAACCGAAAAACAAGAAGAAGGCAAAGGCATCGAATTCCGCGACCCAAAAGAGTTCGAATCGCCGAACGAGGCGTGGTACTCTCGACTCACCAAATTGCTATTGCTCATGAACAAGCTACAGTACCCCAAACAGCCGCCAGACCCACGGGATTTAAAGGAGCGAGTGCCCAAATTGAAACGCGACGATTTCACGATGAAATATGTCATGGAGGCGTTTAAGGTAAAAAAAATTTTTCTAAAAAGGCCTAATAATGGCCTAATTTAGGCCTATTATTTAGGCCTAATTTAGGCCAAAACTACAGTAACCCAAAAAAATTTTGCGAAATAGCCATGAGTATACTCAACTGAAAGCTCTTGAAAGTCGAATTGATTGGTGTA</canonical>
            <polymorphic>AATGGGCTATAGTTGAGGCTATATAAATGAGCTAGAAATGGTCAAAAATAACCACGAAATGGTCTTAACTAGCTTAAAATAGTCTAAAATAGGCTAAAATGGTCCGAAAACAGCTCAAAATAGTCCCCAAAATGACTTAGAATCGCCCAAAAATAAGACTCTAAAACTGTCAAAAACTGTTCAAAATGACCAAAGTAATGTTTGAAAATCTTTTATTATTGATCCCAAAATGGCTAAAAATGGTCCAAAATGGCTTAACATGAACTAAAAAAATAGCCAGAAATTATCCAAAAATGATTTTATATGGCTTAAAATGAACCCAAAACTCATAAATAACGGTCCCCAAAACCTCGAAACACTGTCTAAAAAGGCCTAAGAAGGCCTAAAAGGGCCTAAAATCGATATTTCCAGTGCTTCTCAGCCAACCCTTCCTCATCGTGTACCGCCCAAAATAACTGGGAATTTCCTGCTGAAAAATGGTCCAAAACGACCTAAAAATYCGCTAAAATAGCTTTAAATGGGCCTAAAAAGGCCTGAAAAGGCCTAAAAATCTCAATTTCCAGTGCTTCTCAGCCACGTTCCTGGTCGTCTTCCACCCAACGGACATCCTCAAAACGCCCCTAACCGAAAAACAAGAAGAAGGCAAAGGCATCGAATTCCGCGACCCAAAAGAGTTCGAATCGCCGAACGAGGCGTGGTACTCTCGACTCACCAAATTGCTATTGCTCATGAACAAGCTACAGTACCCCAAACAGCCGCCAGACCCACGGGATTTAAAGGAGCGAGTGCCCAAATTGAAACGCGACGATTTCACGATGAAATATGTCATGGAGGCGTTTAAGGTAAAAAAAATTTTTCTAAAAAGGCCTAATAATGGCCTAATTTAGGCCTATTATTTAGGCCTAATTTAGGCCAAAACTACAGTAACCCAAAAAAATTTTGCGAAATAGCCATGAGTATACTCAACTGAAAGCTCTTGAAAGTCGAATTGATTGGTGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>460 196 158 85 65 36</canonical_bands>
                <polymorphic_bands>460 196 194 85 65</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>281 179 100 78 60 58 58 51 36 31 30 24 14</canonical_bands>
                <polymorphic_bands>281 179 100 94 78 60 58 51 31 30 24 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATATTTCCAGTGCTTCTC</pcr_primer_p1>
		<pcr_primer_p2>CTTTGCCTTCTTCTTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGATATTTCCAGTGCTTCTCAGCCAACCCTTCCTCATCGTGTACCGCCCAAAATAACTGGGAATTTCCTGCTGAAAAATGGTCCAAAACGACCTAAAAATTCGCTAAAATAGCTTTAAATGGGCCTAAAAAGGCCTGAAAAGGCCTAAAAATCTCAATTTCCAGTGCTTCTCAGCCACGTTCCTGGTCGTCTTCCACCCAACGGACATCCTCAAAACGCCCCTAACCGAAAAACAAGAAGAAGGCAAAG</canonical_amplicon>
		<polymorphic_amplicon>CGATATTTCCAGTGCTTCTCAGCCAACCCTTCCTCATCGTGTACCGCCCAAAATAACTGGGAATTTCCTGCTGAAAAATGGTCCAAAACGACCTAAAAATYCGCTAAAATAGCTTTAAATGGGCCTAAAAAGGCCTGAAAAGGCCTAAAAATCTCAATTTCCAGTGCTTCTCAGCCACGTTCCTGGTCGTCTTCCACCCAACGGACATCCTCAAAACGCCCCTAACCGAAAAACAAGAAGAAGGCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32578</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>1803</contig_pos>
        <strand></strand>
        <context>aaaatagctt[T/A]aaatgggcct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCCTGCTGAAAAATGGTCCAAAACGACCTAAAAATTCGCTAAAATAGCTT</left_flank>
        <right_flank>AAATGGGCCTAAAAAGGCCTGAAAAGGCCTAAAAATCTCAATTTCCAGTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGCTATATAAATGAGCTAGAAATGGTCAAAAATAACCACGAAATGGTCTTAACTAGCTTAAAATAGTCTAAAATAGGCTAAAATGGTCCGAAAACAGCTCAAAATAGTCCCCAAAATGACTTAGAATCGCCCAAAAATAAGACTCTAAAACTGTCAAAAACTGTTCAAAATGACCAAAGTAATGTTTGAAAATCTTTTATTATTGATCCCAAAATGGCTAAAAATGGTCCAAAATGGCTTAACATGAACTAAAAAAATAGCCAGAAATTATCCAAAAATGATTTTATATGGCTTAAAATGAACCCAAAACTCATAAATAACGGTCCCCAAAACCTCGAAACACTGTCTAAAAAGGCCTAAGAAGGCCTAAAAGGGCCTAAAATCGATATTTCCAGTGCTTCTCAGCCAACCCTTCCTCATCGTGTACCGCCCAAAATAACTGGGAATTTCCTGCTGAAAAATGGTCCAAAACGACCTAAAAATTCGCTAAAATAGCTTTAAATGGGCCTAAAAAGGCCTGAAAAGGCCTAAAAATCTCAATTTCCAGTGCTTCTCAGCCACGTTCCTGGTCGTCTTCCACCCAACGGACATCCTCAAAACGCCCCTAACCGAAAAACAAGAAGAAGGCAAAGGCATCGAATTCCGCGACCCAAAAGAGTTCGAATCGCCGAACGAGGCGTGGTACTCTCGACTCACCAAATTGCTATTGCTCATGAACAAGCTACAGTACCCCAAACAGCCGCCAGACCCACGGGATTTAAAGGAGCGAGTGCCCAAATTGAAACGCGACGATTTCACGATGAAATATGTCATGGAGGCGTTTAAGGTAAAAAAAATTTTTCTAAAAAGGCCTAATAATGGCCTAATTTAGGCCTATTATTTAGGCCTAATTTAGGCCAAAACTACAGTAACCCAAAAAAATTTTGCGAAATAGCCATGAGTATACTCAACTGAAAGCTCTTGAAAGTCGAATTGATTGGTGTAGATTTCATTCCTCTA</canonical>
            <polymorphic>AGGCTATATAAATGAGCTAGAAATGGTCAAAAATAACCACGAAATGGTCTTAACTAGCTTAAAATAGTCTAAAATAGGCTAAAATGGTCCGAAAACAGCTCAAAATAGTCCCCAAAATGACTTAGAATCGCCCAAAAATAAGACTCTAAAACTGTCAAAAACTGTTCAAAATGACCAAAGTAATGTTTGAAAATCTTTTATTATTGATCCCAAAATGGCTAAAAATGGTCCAAAATGGCTTAACATGAACTAAAAAAATAGCCAGAAATTATCCAAAAATGATTTTATATGGCTTAAAATGAACCCAAAACTCATAAATAACGGTCCCCAAAACCTCGAAACACTGTCTAAAAAGGCCTAAGAAGGCCTAAAAGGGCCTAAAATCGATATTTCCAGTGCTTCTCAGCCAACCCTTCCTCATCGTGTACCGCCCAAAATAACTGGGAATTTCCTGCTGAAAAATGGTCCAAAACGACCTAAAAATTCGCTAAAATAGCTTWAAATGGGCCTAAAAAGGCCTGAAAAGGCCTAAAAATCTCAATTTCCAGTGCTTCTCAGCCACGTTCCTGGTCGTCTTCCACCCAACGGACATCCTCAAAACGCCCCTAACCGAAAAACAAGAAGAAGGCAAAGGCATCGAATTCCGCGACCCAAAAGAGTTCGAATCGCCGAACGAGGCGTGGTACTCTCGACTCACCAAATTGCTATTGCTCATGAACAAGCTACAGTACCCCAAACAGCCGCCAGACCCACGGGATTTAAAGGAGCGAGTGCCCAAATTGAAACGCGACGATTTCACGATGAAATATGTCATGGAGGCGTTTAAGGTAAAAAAAATTTTTCTAAAAAGGCCTAATAATGGCCTAATTTAGGCCTATTATTTAGGCCTAATTTAGGCCAAAACTACAGTAACCCAAAAAAATTTTGCGAAATAGCCATGAGTATACTCAACTGAAAGCTCTTGAAAGTCGAATTGATTGGTGTAGATTTCATTCCTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 260 240</canonical_bands>
                <polymorphic_bands>760 240</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>260 205 181 177 64 54 50 9</canonical_bands>
                <polymorphic_bands>465 181 177 64 54 50 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATATTTCCAGTGCTTCTC</pcr_primer_p1>
		<pcr_primer_p2>CTTTGCCTTCTTCTTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGATATTTCCAGTGCTTCTCAGCCAACCCTTCCTCATCGTGTACCGCCCAAAATAACTGGGAATTTCCTGCTGAAAAATGGTCCAAAACGACCTAAAAATTCGCTAAAATAGCTTTAAATGGGCCTAAAAAGGCCTGAAAAGGCCTAAAAATCTCAATTTCCAGTGCTTCTCAGCCACGTTCCTGGTCGTCTTCCACCCAACGGACATCCTCAAAACGCCCCTAACCGAAAAACAAGAAGAAGGCAAAG</canonical_amplicon>
		<polymorphic_amplicon>CGATATTTCCAGTGCTTCTCAGCCAACCCTTCCTCATCGTGTACCGCCCAAAATAACTGGGAATTTCCTGCTGAAAAATGGTCCAAAACGACCTAAAAATTCGCTAAAATAGCTTWAAATGGGCCTAAAAAGGCCTGAAAAGGCCTAAAAATCTCAATTTCCAGTGCTTCTCAGCCACGTTCCTGGTCGTCTTCCACCCAACGGACATCCTCAAAACGCCCCTAACCGAAAAACAAGAAGAAGGCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32579</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>1816</contig_pos>
        <strand></strand>
        <context>atgggcctaa[A/C]aaggcctgaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGGTCCAAAACGACCTAAAAATTCGCTAAAATAGCTTTAAATGGGCCTAA</left_flank>
        <right_flank>AAGGCCTGAAAAGGCCTAAAAATCTCAATTTCCAGTGCTTCTCAGCCACG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCTAGAAATGGTCAAAAATAACCACGAAATGGTCTTAACTAGCTTAAAATAGTCTAAAATAGGCTAAAATGGTCCGAAAACAGCTCAAAATAGTCCCCAAAATGACTTAGAATCGCCCAAAAATAAGACTCTAAAACTGTCAAAAACTGTTCAAAATGACCAAAGTAATGTTTGAAAATCTTTTATTATTGATCCCAAAATGGCTAAAAATGGTCCAAAATGGCTTAACATGAACTAAAAAAATAGCCAGAAATTATCCAAAAATGATTTTATATGGCTTAAAATGAACCCAAAACTCATAAATAACGGTCCCCAAAACCTCGAAACACTGTCTAAAAAGGCCTAAGAAGGCCTAAAAGGGCCTAAAATCGATATTTCCAGTGCTTCTCAGCCAACCCTTCCTCATCGTGTACCGCCCAAAATAACTGGGAATTTCCTGCTGAAAAATGGTCCAAAACGACCTAAAAATTCGCTAAAATAGCTTTAAATGGGCCTAAAAAGGCCTGAAAAGGCCTAAAAATCTCAATTTCCAGTGCTTCTCAGCCACGTTCCTGGTCGTCTTCCACCCAACGGACATCCTCAAAACGCCCCTAACCGAAAAACAAGAAGAAGGCAAAGGCATCGAATTCCGCGACCCAAAAGAGTTCGAATCGCCGAACGAGGCGTGGTACTCTCGACTCACCAAATTGCTATTGCTCATGAACAAGCTACAGTACCCCAAACAGCCGCCAGACCCACGGGATTTAAAGGAGCGAGTGCCCAAATTGAAACGCGACGATTTCACGATGAAATATGTCATGGAGGCGTTTAAGGTAAAAAAAATTTTTCTAAAAAGGCCTAATAATGGCCTAATTTAGGCCTATTATTTAGGCCTAATTTAGGCCAAAACTACAGTAACCCAAAAAAATTTTGCGAAATAGCCATGAGTATACTCAACTGAAAGCTCTTGAAAGTCGAATTGATTGGTGTAGATTTCATTCCTCTAGGATTACTGTAGC</canonical>
            <polymorphic>GAGCTAGAAATGGTCAAAAATAACCACGAAATGGTCTTAACTAGCTTAAAATAGTCTAAAATAGGCTAAAATGGTCCGAAAACAGCTCAAAATAGTCCCCAAAATGACTTAGAATCGCCCAAAAATAAGACTCTAAAACTGTCAAAAACTGTTCAAAATGACCAAAGTAATGTTTGAAAATCTTTTATTATTGATCCCAAAATGGCTAAAAATGGTCCAAAATGGCTTAACATGAACTAAAAAAATAGCCAGAAATTATCCAAAAATGATTTTATATGGCTTAAAATGAACCCAAAACTCATAAATAACGGTCCCCAAAACCTCGAAACACTGTCTAAAAAGGCCTAAGAAGGCCTAAAAGGGCCTAAAATCGATATTTCCAGTGCTTCTCAGCCAACCCTTCCTCATCGTGTACCGCCCAAAATAACTGGGAATTTCCTGCTGAAAAATGGTCCAAAACGACCTAAAAATTCGCTAAAATAGCTTTAAATGGGCCTAAMAAGGCCTGAAAAGGCCTAAAAATCTCAATTTCCAGTGCTTCTCAGCCACGTTCCTGGTCGTCTTCCACCCAACGGACATCCTCAAAACGCCCCTAACCGAAAAACAAGAAGAAGGCAAAGGCATCGAATTCCGCGACCCAAAAGAGTTCGAATCGCCGAACGAGGCGTGGTACTCTCGACTCACCAAATTGCTATTGCTCATGAACAAGCTACAGTACCCCAAACAGCCGCCAGACCCACGGGATTTAAAGGAGCGAGTGCCCAAATTGAAACGCGACGATTTCACGATGAAATATGTCATGGAGGCGTTTAAGGTAAAAAAAATTTTTCTAAAAAGGCCTAATAATGGCCTAATTTAGGCCTATTATTTAGGCCTAATTTAGGCCAAAACTACAGTAACCCAAAAAAATTTTGCGAAATAGCCATGAGTATACTCAACTGAAAGCTCTTGAAAGTCGAATTGATTGGTGTAGATTTCATTCCTCTAGGATTACTGTAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATATTTCCAGTGCTTCTC</pcr_primer_p1>
		<pcr_primer_p2>CTTTGCCTTCTTCTTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGATATTTCCAGTGCTTCTCAGCCAACCCTTCCTCATCGTGTACCGCCCAAAATAACTGGGAATTTCCTGCTGAAAAATGGTCCAAAACGACCTAAAAATTCGCTAAAATAGCTTTAAATGGGCCTAAAAAGGCCTGAAAAGGCCTAAAAATCTCAATTTCCAGTGCTTCTCAGCCACGTTCCTGGTCGTCTTCCACCCAACGGACATCCTCAAAACGCCCCTAACCGAAAAACAAGAAGAAGGCAAAG</canonical_amplicon>
		<polymorphic_amplicon>CGATATTTCCAGTGCTTCTCAGCCAACCCTTCCTCATCGTGTACCGCCCAAAATAACTGGGAATTTCCTGCTGAAAAATGGTCCAAAACGACCTAAAAATTCGCTAAAATAGCTTTAAATGGGCCTAAMAAGGCCTGAAAAGGCCTAAAAATCTCAATTTCCAGTGCTTCTCAGCCACGTTCCTGGTCGTCTTCCACCCAACGGACATCCTCAAAACGCCCCTAACCGAAAAACAAGAAGAAGGCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32580</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>1956</contig_pos>
        <strand></strand>
        <context>TCCGCGACCC[A/C]AAAGAGTTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCCCTAACCGAAAAACAAGAAGAAGGCAAAGGCATCGAATTCCGCGACCC</left_flank>
        <right_flank>AAAGAGTTCGAATCGCCGAACGAGGCGTGGTACTCTCGACTCACCAAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCAAAAACTGTTCAAAATGACCAAAGTAATGTTTGAAAATCTTTTATTATTGATCCCAAAATGGCTAAAAATGGTCCAAAATGGCTTAACATGAACTAAAAAAATAGCCAGAAATTATCCAAAAATGATTTTATATGGCTTAAAATGAACCCAAAACTCATAAATAACGGTCCCCAAAACCTCGAAACACTGTCTAAAAAGGCCTAAGAAGGCCTAAAAGGGCCTAAAATCGATATTTCCAGTGCTTCTCAGCCAACCCTTCCTCATCGTGTACCGCCCAAAATAACTGGGAATTTCCTGCTGAAAAATGGTCCAAAACGACCTAAAAATTCGCTAAAATAGCTTTAAATGGGCCTAAAAAGGCCTGAAAAGGCCTAAAAATCTCAATTTCCAGTGCTTCTCAGCCACGTTCCTGGTCGTCTTCCACCCAACGGACATCCTCAAAACGCCCCTAACCGAAAAACAAGAAGAAGGCAAAGGCATCGAATTCCGCGACCCAAAAGAGTTCGAATCGCCGAACGAGGCGTGGTACTCTCGACTCACCAAATTGCTATTGCTCATGAACAAGCTACAGTACCCCAAACAGCCGCCAGACCCACGGGATTTAAAGGAGCGAGTGCCCAAATTGAAACGCGACGATTTCACGATGAAATATGTCATGGAGGCGTTTAAGGTAAAAAAAATTTTTCTAAAAAGGCCTAATAATGGCCTAATTTAGGCCTATTATTTAGGCCTAATTTAGGCCAAAACTACAGTAACCCAAAAAAATTTTGCGAAATAGCCATGAGTATACTCAACTGAAAGCTCTTGAAAGTCGAATTGATTGGTGTAGATTTCATTCCTCTAGGATTACTGTAGCTCGAGATACGGTAGTTTCTAGAAAACTACAGTAACCCAAAAAAAGTTTCCAGAATAGTCATGAGCATACTCATTTGAAAGCTCTTGACAAACCAAGATGATTAGTGTACATTTCACTTCTGTATGTTTACTGTAGCTCGA</canonical>
            <polymorphic>GTCAAAAACTGTTCAAAATGACCAAAGTAATGTTTGAAAATCTTTTATTATTGATCCCAAAATGGCTAAAAATGGTCCAAAATGGCTTAACATGAACTAAAAAAATAGCCAGAAATTATCCAAAAATGATTTTATATGGCTTAAAATGAACCCAAAACTCATAAATAACGGTCCCCAAAACCTCGAAACACTGTCTAAAAAGGCCTAAGAAGGCCTAAAAGGGCCTAAAATCGATATTTCCAGTGCTTCTCAGCCAACCCTTCCTCATCGTGTACCGCCCAAAATAACTGGGAATTTCCTGCTGAAAAATGGTCCAAAACGACCTAAAAATTCGCTAAAATAGCTTTAAATGGGCCTAAAAAGGCCTGAAAAGGCCTAAAAATCTCAATTTCCAGTGCTTCTCAGCCACGTTCCTGGTCGTCTTCCACCCAACGGACATCCTCAAAACGCCCCTAACCGAAAAACAAGAAGAAGGCAAAGGCATCGAATTCCGCGACCCMAAAGAGTTCGAATCGCCGAACGAGGCGTGGTACTCTCGACTCACCAAATTGCTATTGCTCATGAACAAGCTACAGTACCCCAAACAGCCGCCAGACCCACGGGATTTAAAGGAGCGAGTGCCCAAATTGAAACGCGACGATTTCACGATGAAATATGTCATGGAGGCGTTTAAGGTAAAAAAAATTTTTCTAAAAAGGCCTAATAATGGCCTAATTTAGGCCTATTATTTAGGCCTAATTTAGGCCAAAACTACAGTAACCCAAAAAAATTTTGCGAAATAGCCATGAGTATACTCAACTGAAAGCTCTTGAAAGTCGAATTGATTGGTGTAGATTTCATTCCTCTAGGATTACTGTAGCTCGAGATACGGTAGTTTCTAGAAAACTACAGTAACCCAAAAAAAGTTTCCAGAATAGTCATGAGCATACTCATTTGAAAGCTCTTGACAAACCAAGATGATTAGTGTACATTTCACTTCTGTATGTTTACTGTAGCTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTTCCAGTGCTTCTCAG</pcr_primer_p1>
		<pcr_primer_p2>GTTTGGGGTACTGTAGCTTGT</pcr_primer_p2>
		<pcr_amplicon_size>200</pcr_amplicon_size>
		<canonical_amplicon>CAATTTCCAGTGCTTCTCAGCCACGTTCCTGGTCGTCTTCCACCCAACGGACATCCTCAAAACGCCCCTAACCGAAAAACAAGAAGAAGGCAAAGGCATCGAATTCCGCGACCCAAAAGAGTTCGAATCGCCGAACGAGGCGTGGTACTCTCGACTCACCAAATTGCTATTGCTCATGAACAAGCTACAGTACCCCAAAC</canonical_amplicon>
		<polymorphic_amplicon>CAATTTCCAGTGCTTCTCAGCCACGTTCCTGGTCGTCTTCCACCCAACGGACATCCTCAAAACGCCCCTAACCGAAAAACAAGAAGAAGGCAAAGGCATCGAATTCCGCGACCCMAAAGAGTTCGAATCGCCGAACGAGGCGTGGTACTCTCGACTCACCAAATTGCTATTGCTCATGAACAAGCTACAGTACCCCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32581</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>6792</contig_pos>
        <strand></strand>
        <context>CCTGAAAAGT[G/A]CTGTAGGGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTGGCGGTATTTTCAGCCAATTTCAGGAGCCGTTTTTCGTCCTGAAAAGT</left_flank>
        <right_flank>CTGTAGGGAATATAGCCACGGCCGAGTTTCCAACACCCTTGGTTTTCTAG</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATGACCGAAAATCGCCTGAAAAAATGGCGAAAAATGACAAAAAAGCGCATTTTCGAAAAAATTCAAAATCGTCCAATCGGGATAAAAATCGATATCACGAGCTGAAATTGGCTGAAAATACTGTAAGAAAATTTCGGAAAAATCGAAATTTGAAAAAATTTTATTTTGAAAAATTCCAAAAAAAATTTTTCCCAAATTTCGACTTTTTCAAAAATTTCTTTCAGTATTCAAATTTTCAGCCAATTTCAGCTCGTGATATCAATTTTTTCACAATCGGATGATTTTGAAAAAATCGAGAAAAAAAAGTTTTTTTTTCGGAAATTTTGACTTCCAAGCTAGATAAGCTTTCTAGGCCACCTAGCTTGGTGGCCTAACTCGGAGAAAGTTAGGCCATCTAGTTTGGTGGCCTAAGTAAGGTTTCTAGGCCATGATGGCCTAACTTTCTTTTGGCGGTATTTTCAGCCAATTTCAGGAGCCGTTTTTCGTCCTGAAAAGTGCTGTAGGGAATATAGCCACGGCCGAGTTTCCAACACCCTTGGTTTTCTAGTCCATCAAGCCAGATGGTCTAGGTCATCCAGCTTGGTGGCCTAACTTTCTCCAAGATGATTTTTCTAGGTCACGCCCCTTTACCTGCACAGCAAAATCCTCGGGTCGAAACGGATTGATCAATTGTCCATTCTGTCGTTTCCAGACTGCCGTGAACGCCTCCCCAGTCTGATTTAGGGATCCATTTGAGATCAGAGCTCCGGATCCAAGCATTCCGATTGCTGAAGAGCATGTGCCTATGCCTGTGGCCGAGCCAGCCTGACCGCCAATTCCAATTGCACCGTCTACCGTACCACGCCGTTGTGGAGAGGCGTGACGCAGCTTTGCGAGGGCCGCTGGAACATTTTAGAGCTATTTTAGCCTACTTTAAGCCATTCGTTGAAAATTCTAGGCTAATTTAGAGCAATTCGAAGCGTTTCTTGATCAAAATAACCCCTAAATTCAGCTCTAA</canonical>
            <polymorphic>AAAATGACCGAAAATCGCCTGAAAAAATGGCGAAAAATGACAAAAAAGCGCATTTTCGAAAAAATTCAAAATCGTCCAATCGGGATAAAAATCGATATCACGAGCTGAAATTGGCTGAAAATACTGTAAGAAAATTTCGGAAAAATCGAAATTTGAAAAAATTTTATTTTGAAAAATTCCAAAAAAAATTTTTCCCAAATTTCGACTTTTTCAAAAATTTCTTTCAGTATTCAAATTTTCAGCCAATTTCAGCTCGTGATATCAATTTTTTCACAATCGGATGATTTTGAAAAAATCGAGAAAAAAAAGTTTTTTTTTCGGAAATTTTGACTTCCAAGCTAGATAAGCTTTCTAGGCCACCTAGCTTGGTGGCCTAACTCGGAGAAAGTTAGGCCATCTAGTTTGGTGGCCTAAGTAAGGTTTCTAGGCCATGATGGCCTAACTTTCTTTTGGCGGTATTTTCAGCCAATTTCAGGAGCCGTTTTTCGTCCTGAAAAGTRCTGTAGGGAATATAGCCACGGCCGAGTTTCCAACACCCTTGGTTTTCTAGTCCATCAAGCCAGATGGTCTAGGTCATCCAGCTTGGTGGCCTAACTTTCTCCAAGATGATTTTTCTAGGTCACGCCCCTTTACCTGCACAGCAAAATCCTCGGGTCGAAACGGATTGATCAATTGTCCATTCTGTCGTTTCCAGACTGCCGTGAACGCCTCCCCAGTCTGATTTAGGGATCCATTTGAGATCAGAGCTCCGGATCCAAGCATTCCGATTGCTGAAGAGCATGTGCCTATGCCTGTGGCCGAGCCAGCCTGACCGCCAATTCCAATTGCACCGTCTACCGTACCACGCCGTTGTGGAGAGGCGTGACGCAGCTTTGCGAGGGCCGCTGGAACATTTTAGAGCTATTTTAGCCTACTTTAAGCCATTCGTTGAAAATTCTAGGCTAATTTAGAGCAATTCGAAGCGTTTCTTGATCAAAATAACCCCTAAATTCAGCTCTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>158 136 100 92 86 81 65 53 37 34 33 18 17 16 15 15 12 12 10 10</canonical_bands>
                <polymorphic_bands>158 136 110 100 86 81 65 53 37 34 33 17 16 15 15 12 12 10 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTTCTTTTGGCGGTATTT</pcr_primer_p1>
		<pcr_primer_p2>GAAACGACAGAATGGACAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTTCTTTTGGCGGTATTTTCAGCCAATTTCAGGAGCCGTTTTTCGTCCTGAAAAGTGCTGTAGGGAATATAGCCACGGCCGAGTTTCCAACACCCTTGGTTTTCTAGTCCATCAAGCCAGATGGTCTAGGTCATCCAGCTTGGTGGCCTAACTTTCTCCAAGATGATTTTTCTAGGTCACGCCCCTTTACCTGCACAGCAAAATCCTCGGGTCGAAACGGATTGATCAATTGTCCATTCTGTCGTTTC</canonical_amplicon>
		<polymorphic_amplicon>ACTTTCTTTTGGCGGTATTTTCAGCCAATTTCAGGAGCCGTTTTTCGTCCTGAAAAGTRCTGTAGGGAATATAGCCACGGCCGAGTTTCCAACACCCTTGGTTTTCTAGTCCATCAAGCCAGATGGTCTAGGTCATCCAGCTTGGTGGCCTAACTTTCTCCAAGATGATTTTTCTAGGTCACGCCCCTTTACCTGCACAGCAAAATCCTCGGGTCGAAACGGATTGATCAATTGTCCATTCTGTCGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32582</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>6912</contig_pos>
        <strand></strand>
        <context>tttttctagg[T/C]CACGCCCCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAGGTCATCCAGCTTGGTGGCCTAACTTTCTCCAAGATGATTTTTCTAGG</left_flank>
        <right_flank>CACGCCCCTTTACCTGCACAGCAAAATCCTCGGGTCGAAACGGATTGATC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATACTGTAAGAAAATTTCGGAAAAATCGAAATTTGAAAAAATTTTATTTTGAAAAATTCCAAAAAAAATTTTTCCCAAATTTCGACTTTTTCAAAAATTTCTTTCAGTATTCAAATTTTCAGCCAATTTCAGCTCGTGATATCAATTTTTTCACAATCGGATGATTTTGAAAAAATCGAGAAAAAAAAGTTTTTTTTTCGGAAATTTTGACTTCCAAGCTAGATAAGCTTTCTAGGCCACCTAGCTTGGTGGCCTAACTCGGAGAAAGTTAGGCCATCTAGTTTGGTGGCCTAAGTAAGGTTTCTAGGCCATGATGGCCTAACTTTCTTTTGGCGGTATTTTCAGCCAATTTCAGGAGCCGTTTTTCGTCCTGAAAAGTGCTGTAGGGAATATAGCCACGGCCGAGTTTCCAACACCCTTGGTTTTCTAGTCCATCAAGCCAGATGGTCTAGGTCATCCAGCTTGGTGGCCTAACTTTCTCCAAGATGATTTTTCTAGGTCACGCCCCTTTACCTGCACAGCAAAATCCTCGGGTCGAAACGGATTGATCAATTGTCCATTCTGTCGTTTCCAGACTGCCGTGAACGCCTCCCCAGTCTGATTTAGGGATCCATTTGAGATCAGAGCTCCGGATCCAAGCATTCCGATTGCTGAAGAGCATGTGCCTATGCCTGTGGCCGAGCCAGCCTGACCGCCAATTCCAATTGCACCGTCTACCGTACCACGCCGTTGTGGAGAGGCGTGACGCAGCTTTGCGAGGGCCGCTGGAACATTTTAGAGCTATTTTAGCCTACTTTAAGCCATTCGTTGAAAATTCTAGGCTAATTTAGAGCAATTCGAAGCGTTTCTTGATCAAAATAACCCCTAAATTCAGCTCTAAACCCCTTAAAAACCCCTAAAACCTTCAAAAAGTCTTAAAAATCGACATTTTTAAAAATTGTGCTCGGATGGCCTAGTGGGATTTTGGACATGCGAATTTTCGGAAAATCAACACCAGGGT</canonical>
            <polymorphic>ATACTGTAAGAAAATTTCGGAAAAATCGAAATTTGAAAAAATTTTATTTTGAAAAATTCCAAAAAAAATTTTTCCCAAATTTCGACTTTTTCAAAAATTTCTTTCAGTATTCAAATTTTCAGCCAATTTCAGCTCGTGATATCAATTTTTTCACAATCGGATGATTTTGAAAAAATCGAGAAAAAAAAGTTTTTTTTTCGGAAATTTTGACTTCCAAGCTAGATAAGCTTTCTAGGCCACCTAGCTTGGTGGCCTAACTCGGAGAAAGTTAGGCCATCTAGTTTGGTGGCCTAAGTAAGGTTTCTAGGCCATGATGGCCTAACTTTCTTTTGGCGGTATTTTCAGCCAATTTCAGGAGCCGTTTTTCGTCCTGAAAAGTGCTGTAGGGAATATAGCCACGGCCGAGTTTCCAACACCCTTGGTTTTCTAGTCCATCAAGCCAGATGGTCTAGGTCATCCAGCTTGGTGGCCTAACTTTCTCCAAGATGATTTTTCTAGGYCACGCCCCTTTACCTGCACAGCAAAATCCTCGGGTCGAAACGGATTGATCAATTGTCCATTCTGTCGTTTCCAGACTGCCGTGAACGCCTCCCCAGTCTGATTTAGGGATCCATTTGAGATCAGAGCTCCGGATCCAAGCATTCCGATTGCTGAAGAGCATGTGCCTATGCCTGTGGCCGAGCCAGCCTGACCGCCAATTCCAATTGCACCGTCTACCGTACCACGCCGTTGTGGAGAGGCGTGACGCAGCTTTGCGAGGGCCGCTGGAACATTTTAGAGCTATTTTAGCCTACTTTAAGCCATTCGTTGAAAATTCTAGGCTAATTTAGAGCAATTCGAAGCGTTTCTTGATCAAAATAACCCCTAAATTCAGCTCTAAACCCCTTAAAAACCCCTAAAACCTTCAAAAAGTCTTAAAAATCGACATTTTTAAAAATTGTGCTCGGATGGCCTAGTGGGATTTTGGACATGCGAATTTTCGGAAAATCAACACCAGGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>498 259 243</canonical_bands>
                <polymorphic_bands>741 259</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>498 259 243</canonical_bands>
                <polymorphic_bands>741 259</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTTCTTTTGGCGGTATTT</pcr_primer_p1>
		<pcr_primer_p2>GAAACGACAGAATGGACAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTTCTTTTGGCGGTATTTTCAGCCAATTTCAGGAGCCGTTTTTCGTCCTGAAAAGTGCTGTAGGGAATATAGCCACGGCCGAGTTTCCAACACCCTTGGTTTTCTAGTCCATCAAGCCAGATGGTCTAGGTCATCCAGCTTGGTGGCCTAACTTTCTCCAAGATGATTTTTCTAGGTCACGCCCCTTTACCTGCACAGCAAAATCCTCGGGTCGAAACGGATTGATCAATTGTCCATTCTGTCGTTTC</canonical_amplicon>
		<polymorphic_amplicon>ACTTTCTTTTGGCGGTATTTTCAGCCAATTTCAGGAGCCGTTTTTCGTCCTGAAAAGTGCTGTAGGGAATATAGCCACGGCCGAGTTTCCAACACCCTTGGTTTTCTAGTCCATCAAGCCAGATGGTCTAGGTCATCCAGCTTGGTGGCCTAACTTTCTCCAAGATGATTTTTCTAGGYCACGCCCCTTTACCTGCACAGCAAAATCCTCGGGTCGAAACGGATTGATCAATTGTCCATTCTGTCGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32583</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>6923</contig_pos>
        <strand></strand>
        <context>CACGCCCCTT[T/C]ACCTGCACAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCTTGGTGGCCTAACTTTCTCCAAGATGATTTTTCTAGGTCACGCCCCTT</left_flank>
        <right_flank>ACCTGCACAGCAAAATCCTCGGGTCGAAACGGATTGATCAATTGTCCATT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTCGGAAAAATCGAAATTTGAAAAAATTTTATTTTGAAAAATTCCAAAAAAAATTTTTCCCAAATTTCGACTTTTTCAAAAATTTCTTTCAGTATTCAAATTTTCAGCCAATTTCAGCTCGTGATATCAATTTTTTCACAATCGGATGATTTTGAAAAAATCGAGAAAAAAAAGTTTTTTTTTCGGAAATTTTGACTTCCAAGCTAGATAAGCTTTCTAGGCCACCTAGCTTGGTGGCCTAACTCGGAGAAAGTTAGGCCATCTAGTTTGGTGGCCTAAGTAAGGTTTCTAGGCCATGATGGCCTAACTTTCTTTTGGCGGTATTTTCAGCCAATTTCAGGAGCCGTTTTTCGTCCTGAAAAGTGCTGTAGGGAATATAGCCACGGCCGAGTTTCCAACACCCTTGGTTTTCTAGTCCATCAAGCCAGATGGTCTAGGTCATCCAGCTTGGTGGCCTAACTTTCTCCAAGATGATTTTTCTAGGTCACGCCCCTTTACCTGCACAGCAAAATCCTCGGGTCGAAACGGATTGATCAATTGTCCATTCTGTCGTTTCCAGACTGCCGTGAACGCCTCCCCAGTCTGATTTAGGGATCCATTTGAGATCAGAGCTCCGGATCCAAGCATTCCGATTGCTGAAGAGCATGTGCCTATGCCTGTGGCCGAGCCAGCCTGACCGCCAATTCCAATTGCACCGTCTACCGTACCACGCCGTTGTGGAGAGGCGTGACGCAGCTTTGCGAGGGCCGCTGGAACATTTTAGAGCTATTTTAGCCTACTTTAAGCCATTCGTTGAAAATTCTAGGCTAATTTAGAGCAATTCGAAGCGTTTCTTGATCAAAATAACCCCTAAATTCAGCTCTAAACCCCTTAAAAACCCCTAAAACCTTCAAAAAGTCTTAAAAATCGACATTTTTAAAAATTGTGCTCGGATGGCCTAGTGGGATTTTGGACATGCGAATTTTCGGAAAATCAACACCAGGGTTCGATTCTACT</canonical>
            <polymorphic>AAATTTCGGAAAAATCGAAATTTGAAAAAATTTTATTTTGAAAAATTCCAAAAAAAATTTTTCCCAAATTTCGACTTTTTCAAAAATTTCTTTCAGTATTCAAATTTTCAGCCAATTTCAGCTCGTGATATCAATTTTTTCACAATCGGATGATTTTGAAAAAATCGAGAAAAAAAAGTTTTTTTTTCGGAAATTTTGACTTCCAAGCTAGATAAGCTTTCTAGGCCACCTAGCTTGGTGGCCTAACTCGGAGAAAGTTAGGCCATCTAGTTTGGTGGCCTAAGTAAGGTTTCTAGGCCATGATGGCCTAACTTTCTTTTGGCGGTATTTTCAGCCAATTTCAGGAGCCGTTTTTCGTCCTGAAAAGTGCTGTAGGGAATATAGCCACGGCCGAGTTTCCAACACCCTTGGTTTTCTAGTCCATCAAGCCAGATGGTCTAGGTCATCCAGCTTGGTGGCCTAACTTTCTCCAAGATGATTTTTCTAGGTCACGCCCCTTYACCTGCACAGCAAAATCCTCGGGTCGAAACGGATTGATCAATTGTCCATTCTGTCGTTTCCAGACTGCCGTGAACGCCTCCCCAGTCTGATTTAGGGATCCATTTGAGATCAGAGCTCCGGATCCAAGCATTCCGATTGCTGAAGAGCATGTGCCTATGCCTGTGGCCGAGCCAGCCTGACCGCCAATTCCAATTGCACCGTCTACCGTACCACGCCGTTGTGGAGAGGCGTGACGCAGCTTTGCGAGGGCCGCTGGAACATTTTAGAGCTATTTTAGCCTACTTTAAGCCATTCGTTGAAAATTCTAGGCTAATTTAGAGCAATTCGAAGCGTTTCTTGATCAAAATAACCCCTAAATTCAGCTCTAAACCCCTTAAAAACCCCTAAAACCTTCAAAAAGTCTTAAAAATCGACATTTTTAAAAATTGTGCTCGGATGGCCTAGTGGGATTTTGGACATGCGAATTTTCGGAAAATCAACACCAGGGTTCGATTCTACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTCTTTTGGCGGTATTT</pcr_primer_p1>
		<pcr_primer_p2>GAAACGACAGAATGGACAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTTCTTTTGGCGGTATTTTCAGCCAATTTCAGGAGCCGTTTTTCGTCCTGAAAAGTGCTGTAGGGAATATAGCCACGGCCGAGTTTCCAACACCCTTGGTTTTCTAGTCCATCAAGCCAGATGGTCTAGGTCATCCAGCTTGGTGGCCTAACTTTCTCCAAGATGATTTTTCTAGGTCACGCCCCTTTACCTGCACAGCAAAATCCTCGGGTCGAAACGGATTGATCAATTGTCCATTCTGTCGTTTC</canonical_amplicon>
		<polymorphic_amplicon>ACTTTCTTTTGGCGGTATTTTCAGCCAATTTCAGGAGCCGTTTTTCGTCCTGAAAAGTGCTGTAGGGAATATAGCCACGGCCGAGTTTCCAACACCCTTGGTTTTCTAGTCCATCAAGCCAGATGGTCTAGGTCATCCAGCTTGGTGGCCTAACTTTCTCCAAGATGATTTTTCTAGGTCACGCCCCTTYACCTGCACAGCAAAATCCTCGGGTCGAAACGGATTGATCAATTGTCCATTCTGTCGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32584</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>7061</contig_pos>
        <strand></strand>
        <context>GCATTCCGAT[T/A]GCTGAAGAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGATTTAGGGATCCATTTGAGATCAGAGCTCCGGATCCAAGCATTCCGAT</left_flank>
        <right_flank>GCTGAAGAGCATGTGCCTATGCCTGTGGCCGAGCCAGCCTGACCGCCAAT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCACAATCGGATGATTTTGAAAAAATCGAGAAAAAAAAGTTTTTTTTTCGGAAATTTTGACTTCCAAGCTAGATAAGCTTTCTAGGCCACCTAGCTTGGTGGCCTAACTCGGAGAAAGTTAGGCCATCTAGTTTGGTGGCCTAAGTAAGGTTTCTAGGCCATGATGGCCTAACTTTCTTTTGGCGGTATTTTCAGCCAATTTCAGGAGCCGTTTTTCGTCCTGAAAAGTGCTGTAGGGAATATAGCCACGGCCGAGTTTCCAACACCCTTGGTTTTCTAGTCCATCAAGCCAGATGGTCTAGGTCATCCAGCTTGGTGGCCTAACTTTCTCCAAGATGATTTTTCTAGGTCACGCCCCTTTACCTGCACAGCAAAATCCTCGGGTCGAAACGGATTGATCAATTGTCCATTCTGTCGTTTCCAGACTGCCGTGAACGCCTCCCCAGTCTGATTTAGGGATCCATTTGAGATCAGAGCTCCGGATCCAAGCATTCCGATTGCTGAAGAGCATGTGCCTATGCCTGTGGCCGAGCCAGCCTGACCGCCAATTCCAATTGCACCGTCTACCGTACCACGCCGTTGTGGAGAGGCGTGACGCAGCTTTGCGAGGGCCGCTGGAACATTTTAGAGCTATTTTAGCCTACTTTAAGCCATTCGTTGAAAATTCTAGGCTAATTTAGAGCAATTCGAAGCGTTTCTTGATCAAAATAACCCCTAAATTCAGCTCTAAACCCCTTAAAAACCCCTAAAACCTTCAAAAAGTCTTAAAAATCGACATTTTTAAAAATTGTGCTCGGATGGCCTAGTGGGATTTTGGACATGCGAATTTTCGGAAAATCAACACCAGGGTTCGATTCTACTTGGTGGCAAACTTTTTTGAAATTTTTTGGCTTTTGTTTTAAGCAAGAATTCGGGGGTTTTAAAGGGTTCTAGACTCATTTTAGGAGTTTTTGGGTTACTGTACTTTCTAAAACTACCGTAACTCGAGGTACAGTAATC</canonical>
            <polymorphic>TTCACAATCGGATGATTTTGAAAAAATCGAGAAAAAAAAGTTTTTTTTTCGGAAATTTTGACTTCCAAGCTAGATAAGCTTTCTAGGCCACCTAGCTTGGTGGCCTAACTCGGAGAAAGTTAGGCCATCTAGTTTGGTGGCCTAAGTAAGGTTTCTAGGCCATGATGGCCTAACTTTCTTTTGGCGGTATTTTCAGCCAATTTCAGGAGCCGTTTTTCGTCCTGAAAAGTGCTGTAGGGAATATAGCCACGGCCGAGTTTCCAACACCCTTGGTTTTCTAGTCCATCAAGCCAGATGGTCTAGGTCATCCAGCTTGGTGGCCTAACTTTCTCCAAGATGATTTTTCTAGGTCACGCCCCTTTACCTGCACAGCAAAATCCTCGGGTCGAAACGGATTGATCAATTGTCCATTCTGTCGTTTCCAGACTGCCGTGAACGCCTCCCCAGTCTGATTTAGGGATCCATTTGAGATCAGAGCTCCGGATCCAAGCATTCCGATWGCTGAAGAGCATGTGCCTATGCCTGTGGCCGAGCCAGCCTGACCGCCAATTCCAATTGCACCGTCTACCGTACCACGCCGTTGTGGAGAGGCGTGACGCAGCTTTGCGAGGGCCGCTGGAACATTTTAGAGCTATTTTAGCCTACTTTAAGCCATTCGTTGAAAATTCTAGGCTAATTTAGAGCAATTCGAAGCGTTTCTTGATCAAAATAACCCCTAAATTCAGCTCTAAACCCCTTAAAAACCCCTAAAACCTTCAAAAAGTCTTAAAAATCGACATTTTTAAAAATTGTGCTCGGATGGCCTAGTGGGATTTTGGACATGCGAATTTTCGGAAAATCAACACCAGGGTTCGATTCTACTTGGTGGCAAACTTTTTTGAAATTTTTTGGCTTTTGTTTTAAGCAAGAATTCGGGGGTTTTAAAGGGTTCTAGACTCATTTTAGGAGTTTTTGGGTTACTGTACTTTCTAAAACTACCGTAACTCGAGGTACAGTAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATTTAGGGATCCATTTGA</pcr_primer_p1>
		<pcr_primer_p2>GAATTGCTCTAAATTAGCCTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TGATTTAGGGATCCATTTGAGATCAGAGCTCCGGATCCAAGCATTCCGATTGCTGAAGAGCATGTGCCTATGCCTGTGGCCGAGCCAGCCTGACCGCCAATTCCAATTGCACCGTCTACCGTACCACGCCGTTGTGGAGAGGCGTGACGCAGCTTTGCGAGGGCCGCTGGAACATTTTAGAGCTATTTTAGCCTACTTTAAGCCATTCGTTGAAAATTCTAGGCTAATTTAGAGCAATTC</canonical_amplicon>
		<polymorphic_amplicon>TGATTTAGGGATCCATTTGAGATCAGAGCTCCGGATCCAAGCATTCCGATWGCTGAAGAGCATGTGCCTATGCCTGTGGCCGAGCCAGCCTGACCGCCAATTCCAATTGCACCGTCTACCGTACCACGCCGTTGTGGAGAGGCGTGACGCAGCTTTGCGAGGGCCGCTGGAACATTTTAGAGCTATTTTAGCCTACTTTAAGCCATTCGTTGAAAATTCTAGGCTAATTTAGAGCAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32585</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>7198</contig_pos>
        <strand></strand>
        <context>TAGAGCTATT[T/C]TAGCCTACTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGAGGCGTGACGCAGCTTTGCGAGGGCCGCTGGAACATTTTAGAGCTATT</left_flank>
        <right_flank>TAGCCTACTTTAAGCCATTCGTTGAAAATTCTAGGCTAATTTAGAGCAAT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCCTAAGTAAGGTTTCTAGGCCATGATGGCCTAACTTTCTTTTGGCGGTATTTTCAGCCAATTTCAGGAGCCGTTTTTCGTCCTGAAAAGTGCTGTAGGGAATATAGCCACGGCCGAGTTTCCAACACCCTTGGTTTTCTAGTCCATCAAGCCAGATGGTCTAGGTCATCCAGCTTGGTGGCCTAACTTTCTCCAAGATGATTTTTCTAGGTCACGCCCCTTTACCTGCACAGCAAAATCCTCGGGTCGAAACGGATTGATCAATTGTCCATTCTGTCGTTTCCAGACTGCCGTGAACGCCTCCCCAGTCTGATTTAGGGATCCATTTGAGATCAGAGCTCCGGATCCAAGCATTCCGATTGCTGAAGAGCATGTGCCTATGCCTGTGGCCGAGCCAGCCTGACCGCCAATTCCAATTGCACCGTCTACCGTACCACGCCGTTGTGGAGAGGCGTGACGCAGCTTTGCGAGGGCCGCTGGAACATTTTAGAGCTATTTTAGCCTACTTTAAGCCATTCGTTGAAAATTCTAGGCTAATTTAGAGCAATTCGAAGCGTTTCTTGATCAAAATAACCCCTAAATTCAGCTCTAAACCCCTTAAAAACCCCTAAAACCTTCAAAAAGTCTTAAAAATCGACATTTTTAAAAATTGTGCTCGGATGGCCTAGTGGGATTTTGGACATGCGAATTTTCGGAAAATCAACACCAGGGTTCGATTCTACTTGGTGGCAAACTTTTTTGAAATTTTTTGGCTTTTGTTTTAAGCAAGAATTCGGGGGTTTTAAAGGGTTCTAGACTCATTTTAGGAGTTTTTGGGTTACTGTACTTTCTAAAACTACCGTAACTCGAGGTACAGTAATCCTAGAAAAATGAAATTTGGAGCATTTGACTTGGCTCGTTGAGCGCTTTCAAATGAGTATACTCATGAATAACTTTTAAAATAATTTTTTGGGTTACTGTAGTTTTCTAGAAACTACCGTAACTCGAGCTACAATAAC</canonical>
            <polymorphic>TGGCCTAAGTAAGGTTTCTAGGCCATGATGGCCTAACTTTCTTTTGGCGGTATTTTCAGCCAATTTCAGGAGCCGTTTTTCGTCCTGAAAAGTGCTGTAGGGAATATAGCCACGGCCGAGTTTCCAACACCCTTGGTTTTCTAGTCCATCAAGCCAGATGGTCTAGGTCATCCAGCTTGGTGGCCTAACTTTCTCCAAGATGATTTTTCTAGGTCACGCCCCTTTACCTGCACAGCAAAATCCTCGGGTCGAAACGGATTGATCAATTGTCCATTCTGTCGTTTCCAGACTGCCGTGAACGCCTCCCCAGTCTGATTTAGGGATCCATTTGAGATCAGAGCTCCGGATCCAAGCATTCCGATTGCTGAAGAGCATGTGCCTATGCCTGTGGCCGAGCCAGCCTGACCGCCAATTCCAATTGCACCGTCTACCGTACCACGCCGTTGTGGAGAGGCGTGACGCAGCTTTGCGAGGGCCGCTGGAACATTTTAGAGCTATTYTAGCCTACTTTAAGCCATTCGTTGAAAATTCTAGGCTAATTTAGAGCAATTCGAAGCGTTTCTTGATCAAAATAACCCCTAAATTCAGCTCTAAACCCCTTAAAAACCCCTAAAACCTTCAAAAAGTCTTAAAAATCGACATTTTTAAAAATTGTGCTCGGATGGCCTAGTGGGATTTTGGACATGCGAATTTTCGGAAAATCAACACCAGGGTTCGATTCTACTTGGTGGCAAACTTTTTTGAAATTTTTTGGCTTTTGTTTTAAGCAAGAATTCGGGGGTTTTAAAGGGTTCTAGACTCATTTTAGGAGTTTTTGGGTTACTGTACTTTCTAAAACTACCGTAACTCGAGGTACAGTAATCCTAGAAAAATGAAATTTGGAGCATTTGACTTGGCTCGTTGAGCGCTTTCAAATGAGTATACTCATGAATAACTTTTAAAATAATTTTTTGGGTTACTGTAGTTTTCTAGAAACTACCGTAACTCGAGCTACAATAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCCATTTGAGATCAGAGC</pcr_primer_p1>
		<pcr_primer_p2>ATTGAAGTTGGCTCGTGTAG</pcr_primer_p2>
		<pcr_amplicon_size>860</pcr_amplicon_size>
		<canonical_amplicon>GATCCATTTGAGATCAGAGCTCCGGATCCAAGCATTCCGATTGCTGAAGAGCATGTGCCTATGCCTGTGGCCGAGCCAGCCTGACCGCCAATTCCAATTGCACCGTCTACCGTACCACGCCGTTGTGGAGAGGCGTGACGCAGCTTTGCGAGGGCCGCTGGAACATTTTAGAGCTATTTTAGCCTACTTTAAGCCATT</canonical_amplicon>
		<polymorphic_amplicon>GATCCATTTGAGATCAGAGCTCCGGATCCAAGCATTCCGATTGCTGAAGAGCATGTGCCTATGCCTGTGGCCGAGCCAGCCTGACCGCCAATTCCAATTGCACCGTCTACCGTACCACGCCGTTGTGGAGAGGCGTGACGCAGCTTTGCGAGGGCCGCTGGAACATTTTAGAGCTATTYTAGCCTACTTTAAGCCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32586</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>7325</contig_pos>
        <strand></strand>
        <context>cttcaaaaag[T/C]cttaaaaatc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCCTAAATTCAGCTCTAAACCCCTTAAAAACCCCTAAAACCTTCAAAAAG</left_flank>
        <right_flank>CTTAAAAATCGACATTTTTAAAAATTGTGCTCGGATGGCCTAGTGGGATT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACCCTTGGTTTTCTAGTCCATCAAGCCAGATGGTCTAGGTCATCCAGCTTGGTGGCCTAACTTTCTCCAAGATGATTTTTCTAGGTCACGCCCCTTTACCTGCACAGCAAAATCCTCGGGTCGAAACGGATTGATCAATTGTCCATTCTGTCGTTTCCAGACTGCCGTGAACGCCTCCCCAGTCTGATTTAGGGATCCATTTGAGATCAGAGCTCCGGATCCAAGCATTCCGATTGCTGAAGAGCATGTGCCTATGCCTGTGGCCGAGCCAGCCTGACCGCCAATTCCAATTGCACCGTCTACCGTACCACGCCGTTGTGGAGAGGCGTGACGCAGCTTTGCGAGGGCCGCTGGAACATTTTAGAGCTATTTTAGCCTACTTTAAGCCATTCGTTGAAAATTCTAGGCTAATTTAGAGCAATTCGAAGCGTTTCTTGATCAAAATAACCCCTAAATTCAGCTCTAAACCCCTTAAAAACCCCTAAAACCTTCAAAAAGTCTTAAAAATCGACATTTTTAAAAATTGTGCTCGGATGGCCTAGTGGGATTTTGGACATGCGAATTTTCGGAAAATCAACACCAGGGTTCGATTCTACTTGGTGGCAAACTTTTTTGAAATTTTTTGGCTTTTGTTTTAAGCAAGAATTCGGGGGTTTTAAAGGGTTCTAGACTCATTTTAGGAGTTTTTGGGTTACTGTACTTTCTAAAACTACCGTAACTCGAGGTACAGTAATCCTAGAAAAATGAAATTTGGAGCATTTGACTTGGCTCGTTGAGCGCTTTCAAATGAGTATACTCATGAATAACTTTTAAAATAATTTTTTGGGTTACTGTAGTTTTCTAGAAACTACCGTAACTCGAGCTACAATAACCCTAGAGATATGAAATTTACACCAATCGACTTGGCTTGTCAAGAGCTTTCAGATGAGTATACTCATGACTATTTTTAGAATTTTTTTGGGTTACTGTAGCCTTGGTTTTGGGCTATTTCAGACCGTT</canonical>
            <polymorphic>CACCCTTGGTTTTCTAGTCCATCAAGCCAGATGGTCTAGGTCATCCAGCTTGGTGGCCTAACTTTCTCCAAGATGATTTTTCTAGGTCACGCCCCTTTACCTGCACAGCAAAATCCTCGGGTCGAAACGGATTGATCAATTGTCCATTCTGTCGTTTCCAGACTGCCGTGAACGCCTCCCCAGTCTGATTTAGGGATCCATTTGAGATCAGAGCTCCGGATCCAAGCATTCCGATTGCTGAAGAGCATGTGCCTATGCCTGTGGCCGAGCCAGCCTGACCGCCAATTCCAATTGCACCGTCTACCGTACCACGCCGTTGTGGAGAGGCGTGACGCAGCTTTGCGAGGGCCGCTGGAACATTTTAGAGCTATTTTAGCCTACTTTAAGCCATTCGTTGAAAATTCTAGGCTAATTTAGAGCAATTCGAAGCGTTTCTTGATCAAAATAACCCCTAAATTCAGCTCTAAACCCCTTAAAAACCCCTAAAACCTTCAAAAAGYCTTAAAAATCGACATTTTTAAAAATTGTGCTCGGATGGCCTAGTGGGATTTTGGACATGCGAATTTTCGGAAAATCAACACCAGGGTTCGATTCTACTTGGTGGCAAACTTTTTTGAAATTTTTTGGCTTTTGTTTTAAGCAAGAATTCGGGGGTTTTAAAGGGTTCTAGACTCATTTTAGGAGTTTTTGGGTTACTGTACTTTCTAAAACTACCGTAACTCGAGGTACAGTAATCCTAGAAAAATGAAATTTGGAGCATTTGACTTGGCTCGTTGAGCGCTTTCAAATGAGTATACTCATGAATAACTTTTAAAATAATTTTTTGGGTTACTGTAGTTTTCTAGAAACTACCGTAACTCGAGCTACAATAACCCTAGAGATATGAAATTTACACCAATCGACTTGGCTTGTCAAGAGCTTTCAGATGAGTATACTCATGACTATTTTTAGAATTTTTTTGGGTTACTGTAGCCTTGGTTTTGGGCTATTTCAGACCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTAGGCTAATTTAGAGCAATTC</pcr_primer_p1>
		<pcr_primer_p2>ATTGAAGTTGGCTCGTGTAG</pcr_primer_p2>
		<pcr_amplicon_size>653</pcr_amplicon_size>
		<canonical_amplicon>TTCTAGGCTAATTTAGAGCAATTCGAAGCGTTTCTTGATCAAAATAACCCCTAAATTCAGCTCTAAACCCCTTAAAAACCCCTAAAACCTTCAAAAAGTCTTAAAAATCGACATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTCTAGGCTAATTTAGAGCAATTCGAAGCGTTTCTTGATCAAAATAACCCCTAAATTCAGCTCTAAACCCCTTAAAAACCCCTAAAACCTTCAAAAAGYCTTAAAAATCGACATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32587</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>10445</contig_pos>
        <strand></strand>
        <context>aatgagtata[A/C]tcatgactat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAAATTACACCAATCGACTTGAAATTCCAAGAGCTTTCAAATGAGTATA</left_flank>
        <right_flank>TCATGACTATATTTGAGTAATTTTCGGGATTACTGTAGTTTTGCCCAAAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAACACCGGGGTTCGATTCCACTCGGTGGCAACTTCTTTTTGCTTTTGTTTAGAGCAAGAATTCGGGGTTTCTAGAGGGTTCTAGACTCACTTTGAGCATTTTGGGTTACTGTAGTTTTGTCTAGGCCGCTAAAACTACCGTATCTCGAGCAACAGTAATTCTAAAGCAATGAAAATTACACCTCTTGAAATTCCAAGAGCTTTCAAATGAGTATAATCATGATTATTTTTGGAAATGTTTTTGGGTTACTGTAGCTTTGTAAAAACTATCGTATCTCGAGTTACAGTAATCCTAGAAGATTGAAATTTAGCGCATTTGACTTGAAATTCCCAGAGCTTTCAAGTGAATATACTCATGAGTATTTTTGAGATTTTTTTTGGGTTACTGTAGTTTTTCCTGGGCCACTAAATCTACTGTATCTCGAGTTACAGTAATCCTAAAGCAATGAAAATTACACCAATCGACTTGAAATTCCAAGAGCTTTCAAATGAGTATAATCATGACTATATTTGAGTAATTTTCGGGATTACTGTAGTTTTGCCCAAAGTACAGTACACCGAATATGATTTCAAAAAATAGTCATGAGTATACTCATTTGAAAGCTCTTAAGATTTCAAGTCGATTAGTGCATATTTCATTGCTCTAAGATTACTGTAGCTCGAGATACGGCCGACTTTCTAATAGTGGCCTAGCTTTTGCAAAAACTCTTCCATGGGTACAACACCCCGATTGTGAGGGATTTCGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGGGAATTCGATTTTGCTATGGGAAATCTAGAAAAATTGATTCTAAAAGCCTGAAAAATCGCATTTTTCCAATTTTTAGGCCATCCCGTTTCCCCCAGCCCTAAATACTTCATTTTTCGCCGGATTTTTCCCCAGAAATCTCAGCGAATTCCCTACCTTCTCATTCTCCCTCAACACAATGCCCGTCTCGCCCATTCCCATCTTCTTAGGGGCCGATAAG</canonical>
            <polymorphic>ATCAACACCGGGGTTCGATTCCACTCGGTGGCAACTTCTTTTTGCTTTTGTTTAGAGCAAGAATTCGGGGTTTCTAGAGGGTTCTAGACTCACTTTGAGCATTTTGGGTTACTGTAGTTTTGTCTAGGCCGCTAAAACTACCGTATCTCGAGCAACAGTAATTCTAAAGCAATGAAAATTACACCTCTTGAAATTCCAAGAGCTTTCAAATGAGTATAATCATGATTATTTTTGGAAATGTTTTTGGGTTACTGTAGCTTTGTAAAAACTATCGTATCTCGAGTTACAGTAATCCTAGAAGATTGAAATTTAGCGCATTTGACTTGAAATTCCCAGAGCTTTCAAGTGAATATACTCATGAGTATTTTTGAGATTTTTTTTGGGTTACTGTAGTTTTTCCTGGGCCACTAAATCTACTGTATCTCGAGTTACAGTAATCCTAAAGCAATGAAAATTACACCAATCGACTTGAAATTCCAAGAGCTTTCAAATGAGTATAMTCATGACTATATTTGAGTAATTTTCGGGATTACTGTAGTTTTGCCCAAAGTACAGTACACCGAATATGATTTCAAAAAATAGTCATGAGTATACTCATTTGAAAGCTCTTAAGATTTCAAGTCGATTAGTGCATATTTCATTGCTCTAAGATTACTGTAGCTCGAGATACGGCCGACTTTCTAATAGTGGCCTAGCTTTTGCAAAAACTCTTCCATGGGTACAACACCCCGATTGTGAGGGATTTCGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGGGAATTCGATTTTGCTATGGGAAATCTAGAAAAATTGATTCTAAAAGCCTGAAAAATCGCATTTTTCCAATTTTTAGGCCATCCCGTTTCCCCCAGCCCTAAATACTTCATTTTTCGCCGGATTTTTCCCCAGAAATCTCAGCGAATTCCCTACCTTCTCATTCTCCCTCAACACAATGCCCGTCTCGCCCATTCCCATCTTCTTAGGGGCCGATAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATAACCCATAAAATCAATTCAG</pcr_primer_p1>
		<pcr_primer_p2>CCCATGCAAAACTACCTCTA</pcr_primer_p2>
		<pcr_amplicon_size>914</pcr_amplicon_size>
		<canonical_amplicon>AATCATGACTATATTTGAGTAATTTTCGGGATTACTGTAGTTTTGCCCAAAGTACAGTACACCGAATATGATTTCAAAAAATAGTCATGAGTATACTCATTTGAAAGCTCTTAAGATTTCAAGTCGATTAGTGCATATTTCATTGCTCTAAGATTACTGTAGCTCGAGATACGGCCGACTTTCTAATAGTGGCCTAGCTTTTGCAAAAACTCTTCCATGGGTACAACACCCCGATTGTGAGGGATTTCGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGG</canonical_amplicon>
		<polymorphic_amplicon>AMTCATGACTATATTTGAGTAATTTTCGGGATTACTGTAGTTTTGCCCAAAGTACAGTACACCGAATATGATTTCAAAAAATAGTCATGAGTATACTCATTTGAAAGCTCTTAAGATTTCAAGTCGATTAGTGCATATTTCATTGCTCTAAGATTACTGTAGCTCGAGATACGGCCGACTTTCTAATAGTGGCCTAGCTTTTGCAAAAACTCTTCCATGGGTACAACACCCCGATTGTGAGGGATTTCGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32588</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>10538</contig_pos>
        <strand></strand>
        <context>tcatgagtat[A/G]ctcattygaw</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCCAAAGTACAGTACACCGAATATGATTTCAAAAAATAGTCATGAGTAT</left_flank>
        <right_flank>CTCATTTGAAAGCTCTTAAGATTTCAAGTCGATTAGTGCATATTTCATTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAGCATTTTGGGTTACTGTAGTTTTGTCTAGGCCGCTAAAACTACCGTATCTCGAGCAACAGTAATTCTAAAGCAATGAAAATTACACCTCTTGAAATTCCAAGAGCTTTCAAATGAGTATAATCATGATTATTTTTGGAAATGTTTTTGGGTTACTGTAGCTTTGTAAAAACTATCGTATCTCGAGTTACAGTAATCCTAGAAGATTGAAATTTAGCGCATTTGACTTGAAATTCCCAGAGCTTTCAAGTGAATATACTCATGAGTATTTTTGAGATTTTTTTTGGGTTACTGTAGTTTTTCCTGGGCCACTAAATCTACTGTATCTCGAGTTACAGTAATCCTAAAGCAATGAAAATTACACCAATCGACTTGAAATTCCAAGAGCTTTCAAATGAGTATAATCATGACTATATTTGAGTAATTTTCGGGATTACTGTAGTTTTGCCCAAAGTACAGTACACCGAATATGATTTCAAAAAATAGTCATGAGTATACTCATTTGAAAGCTCTTAAGATTTCAAGTCGATTAGTGCATATTTCATTGCTCTAAGATTACTGTAGCTCGAGATACGGCCGACTTTCTAATAGTGGCCTAGCTTTTGCAAAAACTCTTCCATGGGTACAACACCCCGATTGTGAGGGATTTCGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGGGAATTCGATTTTGCTATGGGAAATCTAGAAAAATTGATTCTAAAAGCCTGAAAAATCGCATTTTTCCAATTTTTAGGCCATCCCGTTTCCCCCAGCCCTAAATACTTCATTTTTCGCCGGATTTTTCCCCAGAAATCTCAGCGAATTCCCTACCTTCTCATTCTCCCTCAACACAATGCCCGTCTCGCCCATTCCCATCTTCTTAGGGGCCGATAAGACGTCGGCGGGCAGCTGAATTCGCGGCCTGAACTGCACGGAAATCGCCGATCTCCGGGCCATTCGATAATACGAGTAATTCATCCAATGAGGG</canonical>
            <polymorphic>TTTGAGCATTTTGGGTTACTGTAGTTTTGTCTAGGCCGCTAAAACTACCGTATCTCGAGCAACAGTAATTCTAAAGCAATGAAAATTACACCTCTTGAAATTCCAAGAGCTTTCAAATGAGTATAATCATGATTATTTTTGGAAATGTTTTTGGGTTACTGTAGCTTTGTAAAAACTATCGTATCTCGAGTTACAGTAATCCTAGAAGATTGAAATTTAGCGCATTTGACTTGAAATTCCCAGAGCTTTCAAGTGAATATACTCATGAGTATTTTTGAGATTTTTTTTGGGTTACTGTAGTTTTTCCTGGGCCACTAAATCTACTGTATCTCGAGTTACAGTAATCCTAAAGCAATGAAAATTACACCAATCGACTTGAAATTCCAAGAGCTTTCAAATGAGTATAATCATGACTATATTTGAGTAATTTTCGGGATTACTGTAGTTTTGCCCAAAGTACAGTACACCGAATATGATTTCAAAAAATAGTCATGAGTATRCTCATTTGAAAGCTCTTAAGATTTCAAGTCGATTAGTGCATATTTCATTGCTCTAAGATTACTGTAGCTCGAGATACGGCCGACTTTCTAATAGTGGCCTAGCTTTTGCAAAAACTCTTCCATGGGTACAACACCCCGATTGTGAGGGATTTCGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGGGAATTCGATTTTGCTATGGGAAATCTAGAAAAATTGATTCTAAAAGCCTGAAAAATCGCATTTTTCCAATTTTTAGGCCATCCCGTTTCCCCCAGCCCTAAATACTTCATTTTTCGCCGGATTTTTCCCCAGAAATCTCAGCGAATTCCCTACCTTCTCATTCTCCCTCAACACAATGCCCGTCTCGCCCATTCCCATCTTCTTAGGGGCCGATAAGACGTCGGCGGGCAGCTGAATTCGCGGCCTGAACTGCACGGAAATCGCCGATCTCCGGGCCATTCGATAATACGAGTAATTCATCCAATGAGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTATAC</site>
                <isoschizomers>
                    <enzyme>BssNAI</enzyme>
                    <enzyme>Bst1107I</enzyme>
                    <enzyme>BstZ17I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 464 34</canonical_bands>
                <polymorphic_bands>536 464</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATAACCCATAAAATCAATTCAG</pcr_primer_p1>
		<pcr_primer_p2>CCCATGCAAAACTACCTCTA</pcr_primer_p2>
		<pcr_amplicon_size>914</pcr_amplicon_size>
		<canonical_amplicon>TACTCATTTGAAAGCTCTTAAGATTTCAAGTCGATTAGTGCATATTTCATTGCTCTAAGATTACTGTAGCTCGAGATACGGCCGACTTTCTAATAGTGGCCTAGCTTTTGCAAAAACTCTTCCATGGGTACAACACCCCGATTGTGAGGGATTTCGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGG</canonical_amplicon>
		<polymorphic_amplicon>TRCTCATTTGAAAGCTCTTAAGATTTCAAGTCGATTAGTGCATATTTCATTGCTCTAAGATTACTGTAGCTCGAGATACGGCCGACTTTCTAATAGTGGCCTAGCTTTTGCAAAAACTCTTCCATGGGTACAACACCCCGATTGTGAGGGATTTCGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32589</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>10545</contig_pos>
        <strand></strand>
        <context>tatrctcatt[T/C]gawagctctt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTACAGTACACCGAATATGATTTCAAAAAATAGTCATGAGTATACTCATT</left_flank>
        <right_flank>GAAAGCTCTTAAGATTTCAAGTCGATTAGTGCATATTTCATTGCTCTAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTGGGTTACTGTAGTTTTGTCTAGGCCGCTAAAACTACCGTATCTCGAGCAACAGTAATTCTAAAGCAATGAAAATTACACCTCTTGAAATTCCAAGAGCTTTCAAATGAGTATAATCATGATTATTTTTGGAAATGTTTTTGGGTTACTGTAGCTTTGTAAAAACTATCGTATCTCGAGTTACAGTAATCCTAGAAGATTGAAATTTAGCGCATTTGACTTGAAATTCCCAGAGCTTTCAAGTGAATATACTCATGAGTATTTTTGAGATTTTTTTTGGGTTACTGTAGTTTTTCCTGGGCCACTAAATCTACTGTATCTCGAGTTACAGTAATCCTAAAGCAATGAAAATTACACCAATCGACTTGAAATTCCAAGAGCTTTCAAATGAGTATAATCATGACTATATTTGAGTAATTTTCGGGATTACTGTAGTTTTGCCCAAAGTACAGTACACCGAATATGATTTCAAAAAATAGTCATGAGTATACTCATTTGAAAGCTCTTAAGATTTCAAGTCGATTAGTGCATATTTCATTGCTCTAAGATTACTGTAGCTCGAGATACGGCCGACTTTCTAATAGTGGCCTAGCTTTTGCAAAAACTCTTCCATGGGTACAACACCCCGATTGTGAGGGATTTCGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGGGAATTCGATTTTGCTATGGGAAATCTAGAAAAATTGATTCTAAAAGCCTGAAAAATCGCATTTTTCCAATTTTTAGGCCATCCCGTTTCCCCCAGCCCTAAATACTTCATTTTTCGCCGGATTTTTCCCCAGAAATCTCAGCGAATTCCCTACCTTCTCATTCTCCCTCAACACAATGCCCGTCTCGCCCATTCCCATCTTCTTAGGGGCCGATAAGACGTCGGCGGGCAGCTGAATTCGCGGCCTGAACTGCACGGAAATCGCCGATCTCCGGGCCATTCGATAATACGAGTAATTCATCCAATGAGGGATAAAAT</canonical>
            <polymorphic>ATTTTGGGTTACTGTAGTTTTGTCTAGGCCGCTAAAACTACCGTATCTCGAGCAACAGTAATTCTAAAGCAATGAAAATTACACCTCTTGAAATTCCAAGAGCTTTCAAATGAGTATAATCATGATTATTTTTGGAAATGTTTTTGGGTTACTGTAGCTTTGTAAAAACTATCGTATCTCGAGTTACAGTAATCCTAGAAGATTGAAATTTAGCGCATTTGACTTGAAATTCCCAGAGCTTTCAAGTGAATATACTCATGAGTATTTTTGAGATTTTTTTTGGGTTACTGTAGTTTTTCCTGGGCCACTAAATCTACTGTATCTCGAGTTACAGTAATCCTAAAGCAATGAAAATTACACCAATCGACTTGAAATTCCAAGAGCTTTCAAATGAGTATAATCATGACTATATTTGAGTAATTTTCGGGATTACTGTAGTTTTGCCCAAAGTACAGTACACCGAATATGATTTCAAAAAATAGTCATGAGTATACTCATTYGAAAGCTCTTAAGATTTCAAGTCGATTAGTGCATATTTCATTGCTCTAAGATTACTGTAGCTCGAGATACGGCCGACTTTCTAATAGTGGCCTAGCTTTTGCAAAAACTCTTCCATGGGTACAACACCCCGATTGTGAGGGATTTCGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGGGAATTCGATTTTGCTATGGGAAATCTAGAAAAATTGATTCTAAAAGCCTGAAAAATCGCATTTTTCCAATTTTTAGGCCATCCCGTTTCCCCCAGCCCTAAATACTTCATTTTTCGCCGGATTTTTCCCCAGAAATCTCAGCGAATTCCCTACCTTCTCATTCTCCCTCAACACAATGCCCGTCTCGCCCATTCCCATCTTCTTAGGGGCCGATAAGACGTCGGCGGGCAGCTGAATTCGCGGCCTGAACTGCACGGAAATCGCCGATCTCCGGGCCATTCGATAATACGAGTAATTCATCCAATGAGGGATAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATAACCCATAAAATCAATTCAG</pcr_primer_p1>
		<pcr_primer_p2>CCCATGCAAAACTACCTCTA</pcr_primer_p2>
		<pcr_amplicon_size>914</pcr_amplicon_size>
		<canonical_amplicon>TTGAAAGCTCTTAAGATTTCAAGTCGATTAGTGCATATTTCATTGCTCTAAGATTACTGTAGCTCGAGATACGGCCGACTTTCTAATAGTGGCCTAGCTTTTGCAAAAACTCTTCCATGGGTACAACACCCCGATTGTGAGGGATTTCGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGG</canonical_amplicon>
		<polymorphic_amplicon>TYGAAAGCTCTTAAGATTTCAAGTCGATTAGTGCATATTTCATTGCTCTAAGATTACTGTAGCTCGAGATACGGCCGACTTTCTAATAGTGGCCTAGCTTTTGCAAAAACTCTTCCATGGGTACAACACCCCGATTGTGAGGGATTTCGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32590</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>10548</contig_pos>
        <strand></strand>
        <context>rctcattyga[A/T]agctcttaag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGTACACCGAATATGATTTCAAAAAATAGTCATGAGTATACTCATTTGA</left_flank>
        <right_flank>AGCTCTTAAGATTTCAAGTCGATTAGTGCATATTTCATTGCTCTAAGATT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGGTTACTGTAGTTTTGTCTAGGCCGCTAAAACTACCGTATCTCGAGCAACAGTAATTCTAAAGCAATGAAAATTACACCTCTTGAAATTCCAAGAGCTTTCAAATGAGTATAATCATGATTATTTTTGGAAATGTTTTTGGGTTACTGTAGCTTTGTAAAAACTATCGTATCTCGAGTTACAGTAATCCTAGAAGATTGAAATTTAGCGCATTTGACTTGAAATTCCCAGAGCTTTCAAGTGAATATACTCATGAGTATTTTTGAGATTTTTTTTGGGTTACTGTAGTTTTTCCTGGGCCACTAAATCTACTGTATCTCGAGTTACAGTAATCCTAAAGCAATGAAAATTACACCAATCGACTTGAAATTCCAAGAGCTTTCAAATGAGTATAATCATGACTATATTTGAGTAATTTTCGGGATTACTGTAGTTTTGCCCAAAGTACAGTACACCGAATATGATTTCAAAAAATAGTCATGAGTATACTCATTTGAAAGCTCTTAAGATTTCAAGTCGATTAGTGCATATTTCATTGCTCTAAGATTACTGTAGCTCGAGATACGGCCGACTTTCTAATAGTGGCCTAGCTTTTGCAAAAACTCTTCCATGGGTACAACACCCCGATTGTGAGGGATTTCGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGGGAATTCGATTTTGCTATGGGAAATCTAGAAAAATTGATTCTAAAAGCCTGAAAAATCGCATTTTTCCAATTTTTAGGCCATCCCGTTTCCCCCAGCCCTAAATACTTCATTTTTCGCCGGATTTTTCCCCAGAAATCTCAGCGAATTCCCTACCTTCTCATTCTCCCTCAACACAATGCCCGTCTCGCCCATTCCCATCTTCTTAGGGGCCGATAAGACGTCGGCGGGCAGCTGAATTCGCGGCCTGAACTGCACGGAAATCGCCGATCTCCGGGCCATTCGATAATACGAGTAATTCATCCAATGAGGGATAAAATATT</canonical>
            <polymorphic>TTGGGTTACTGTAGTTTTGTCTAGGCCGCTAAAACTACCGTATCTCGAGCAACAGTAATTCTAAAGCAATGAAAATTACACCTCTTGAAATTCCAAGAGCTTTCAAATGAGTATAATCATGATTATTTTTGGAAATGTTTTTGGGTTACTGTAGCTTTGTAAAAACTATCGTATCTCGAGTTACAGTAATCCTAGAAGATTGAAATTTAGCGCATTTGACTTGAAATTCCCAGAGCTTTCAAGTGAATATACTCATGAGTATTTTTGAGATTTTTTTTGGGTTACTGTAGTTTTTCCTGGGCCACTAAATCTACTGTATCTCGAGTTACAGTAATCCTAAAGCAATGAAAATTACACCAATCGACTTGAAATTCCAAGAGCTTTCAAATGAGTATAATCATGACTATATTTGAGTAATTTTCGGGATTACTGTAGTTTTGCCCAAAGTACAGTACACCGAATATGATTTCAAAAAATAGTCATGAGTATACTCATTTGAWAGCTCTTAAGATTTCAAGTCGATTAGTGCATATTTCATTGCTCTAAGATTACTGTAGCTCGAGATACGGCCGACTTTCTAATAGTGGCCTAGCTTTTGCAAAAACTCTTCCATGGGTACAACACCCCGATTGTGAGGGATTTCGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGGGAATTCGATTTTGCTATGGGAAATCTAGAAAAATTGATTCTAAAAGCCTGAAAAATCGCATTTTTCCAATTTTTAGGCCATCCCGTTTCCCCCAGCCCTAAATACTTCATTTTTCGCCGGATTTTTCCCCAGAAATCTCAGCGAATTCCCTACCTTCTCATTCTCCCTCAACACAATGCCCGTCTCGCCCATTCCCATCTTCTTAGGGGCCGATAAGACGTCGGCGGGCAGCTGAATTCGCGGCCTGAACTGCACGGAAATCGCCGATCTCCGGGCCATTCGATAATACGAGTAATTCATCCAATGAGGGATAAAATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATAACCCATAAAATCAATTCAG</pcr_primer_p1>
		<pcr_primer_p2>CCCATGCAAAACTACCTCTA</pcr_primer_p2>
		<pcr_amplicon_size>914</pcr_amplicon_size>
		<canonical_amplicon>AAAGCTCTTAAGATTTCAAGTCGATTAGTGCATATTTCATTGCTCTAAGATTACTGTAGCTCGAGATACGGCCGACTTTCTAATAGTGGCCTAGCTTTTGCAAAAACTCTTCCATGGGTACAACACCCCGATTGTGAGGGATTTCGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGG</canonical_amplicon>
		<polymorphic_amplicon>AWAGCTCTTAAGATTTCAAGTCGATTAGTGCATATTTCATTGCTCTAAGATTACTGTAGCTCGAGATACGGCCGACTTTCTAATAGTGGCCTAGCTTTTGCAAAAACTCTTCCATGGGTACAACACCCCGATTGTGAGGGATTTCGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32591</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>10594</contig_pos>
        <strand></strand>
        <context>cattgctcta[A/G]gattactgta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAAAGCTCTTAAGATTTCAAGTCGATTAGTGCATATTTCATTGCTCTA</left_flank>
        <right_flank>GATTACTGTAGCTCGAGATACGGCCGACTTTCTAATAGTGGCCTAGCTTT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGCAACAGTAATTCTAAAGCAATGAAAATTACACCTCTTGAAATTCCAAGAGCTTTCAAATGAGTATAATCATGATTATTTTTGGAAATGTTTTTGGGTTACTGTAGCTTTGTAAAAACTATCGTATCTCGAGTTACAGTAATCCTAGAAGATTGAAATTTAGCGCATTTGACTTGAAATTCCCAGAGCTTTCAAGTGAATATACTCATGAGTATTTTTGAGATTTTTTTTGGGTTACTGTAGTTTTTCCTGGGCCACTAAATCTACTGTATCTCGAGTTACAGTAATCCTAAAGCAATGAAAATTACACCAATCGACTTGAAATTCCAAGAGCTTTCAAATGAGTATAATCATGACTATATTTGAGTAATTTTCGGGATTACTGTAGTTTTGCCCAAAGTACAGTACACCGAATATGATTTCAAAAAATAGTCATGAGTATACTCATTTGAAAGCTCTTAAGATTTCAAGTCGATTAGTGCATATTTCATTGCTCTAAGATTACTGTAGCTCGAGATACGGCCGACTTTCTAATAGTGGCCTAGCTTTTGCAAAAACTCTTCCATGGGTACAACACCCCGATTGTGAGGGATTTCGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGGGAATTCGATTTTGCTATGGGAAATCTAGAAAAATTGATTCTAAAAGCCTGAAAAATCGCATTTTTCCAATTTTTAGGCCATCCCGTTTCCCCCAGCCCTAAATACTTCATTTTTCGCCGGATTTTTCCCCAGAAATCTCAGCGAATTCCCTACCTTCTCATTCTCCCTCAACACAATGCCCGTCTCGCCCATTCCCATCTTCTTAGGGGCCGATAAGACGTCGGCGGGCAGCTGAATTCGCGGCCTGAACTGCACGGAAATCGCCGATCTCCGGGCCATTCGATAATACGAGTAATTCATCCAATGAGGGATAAAATATTCACATCTGGTGTCCTTCTGCTCGACGATGGGGTGGAAAACGAATAG</canonical>
            <polymorphic>GAGCAACAGTAATTCTAAAGCAATGAAAATTACACCTCTTGAAATTCCAAGAGCTTTCAAATGAGTATAATCATGATTATTTTTGGAAATGTTTTTGGGTTACTGTAGCTTTGTAAAAACTATCGTATCTCGAGTTACAGTAATCCTAGAAGATTGAAATTTAGCGCATTTGACTTGAAATTCCCAGAGCTTTCAAGTGAATATACTCATGAGTATTTTTGAGATTTTTTTTGGGTTACTGTAGTTTTTCCTGGGCCACTAAATCTACTGTATCTCGAGTTACAGTAATCCTAAAGCAATGAAAATTACACCAATCGACTTGAAATTCCAAGAGCTTTCAAATGAGTATAATCATGACTATATTTGAGTAATTTTCGGGATTACTGTAGTTTTGCCCAAAGTACAGTACACCGAATATGATTTCAAAAAATAGTCATGAGTATACTCATTTGAAAGCTCTTAAGATTTCAAGTCGATTAGTGCATATTTCATTGCTCTARGATTACTGTAGCTCGAGATACGGCCGACTTTCTAATAGTGGCCTAGCTTTTGCAAAAACTCTTCCATGGGTACAACACCCCGATTGTGAGGGATTTCGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGGGAATTCGATTTTGCTATGGGAAATCTAGAAAAATTGATTCTAAAAGCCTGAAAAATCGCATTTTTCCAATTTTTAGGCCATCCCGTTTCCCCCAGCCCTAAATACTTCATTTTTCGCCGGATTTTTCCCCAGAAATCTCAGCGAATTCCCTACCTTCTCATTCTCCCTCAACACAATGCCCGTCTCGCCCATTCCCATCTTCTTAGGGGCCGATAAGACGTCGGCGGGCAGCTGAATTCGCGGCCTGAACTGCACGGAAATCGCCGATCTCCGGGCCATTCGATAATACGAGTAATTCATCCAATGAGGGATAAAATATTCACATCTGGTGTCCTTCTGCTCGACGATGGGGTGGAAAACGAATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>497 274 164 65</canonical_bands>
                <polymorphic_bands>771 164 65</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATAACCCATAAAATCAATTCAG</pcr_primer_p1>
		<pcr_primer_p2>CCCATGCAAAACTACCTCTA</pcr_primer_p2>
		<pcr_amplicon_size>914</pcr_amplicon_size>
		<canonical_amplicon>AAGATTACTGTAGCTCGAGATACGGCCGACTTTCTAATAGTGGCCTAGCTTTTGCAAAAACTCTTCCATGGGTACAACACCCCGATTGTGAGGGATTTCGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGG</canonical_amplicon>
		<polymorphic_amplicon>ARGATTACTGTAGCTCGAGATACGGCCGACTTTCTAATAGTGGCCTAGCTTTTGCAAAAACTCTTCCATGGGTACAACACCCCGATTGTGAGGGATTTCGATTCCGAAAAAGTCTCTAGAGGTAGTTTTGCATGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32592</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>13597</contig_pos>
        <strand>+</strand>
        <context>CGGTTTCCAC[A/C]GTCTCCTCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCAC</left_flank>
        <right_flank>GTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATGACCTATATTTTCCGGCGTGACCTAGTTTTCATGGTCATTGCCTAAACTTTCAATCCTCTTTGTGCTGTTTTGGGGGTGTTTTAAGCAAGTTTCTAGTCGTGGCCTAACTTTCTCAAAAACTCTTCCATGGGTACAACTCCCCGATTTCGAGGGATTTCGCTAGCGAAAAAGGTGTCCAGGGGTAGTTTTTGATGGGGAATTCAAATTTCTAGTTTCGAGTCGATTCTAGGCCACCAAACCTGAATAAATATGAGCACTGTCGATGAGCTGGACCGGAAAACGACGCGAGTCTTGTCAGTAACGAAACCGCTCTTCACCAGCGACCCTTTCCTCCACATATCCGAAATCCGGGTGTTAATATTTAGATGTCGTTTCTGTTCCTCCACATAAGTCATCCTTCCAATCAAACAGCTACGGTATCTGTACATATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTT</canonical>
            <polymorphic>CCATGACCTATATTTTCCGGCGTGACCTAGTTTTCATGGTCATTGCCTAAACTTTCAATCCTCTTTGTGCTGTTTTGGGGGTGTTTTAAGCAAGTTTCTAGTCGTGGCCTAACTTTCTCAAAAACTCTTCCATGGGTACAACTCCCCGATTTCGAGGGATTTCGCTAGCGAAAAAGGTGTCCAGGGGTAGTTTTTGATGGGGAATTCAAATTTCTAGTTTCGAGTCGATTCTAGGCCACCAAACCTGAATAAATATGAGCACTGTCGATGAGCTGGACCGGAAAACGACGCGAGTCTTGTCAGTAACGAAACCGCTCTTCACCAGCGACCCTTTCCTCCACATATCCGAAATCCGGGTGTTAATATTTAGATGTCGTTTCTGTTCCTCCACATAAGTCATCCTTCCAATCAAACAGCTACGGTATCTGTACATATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACMGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGTCATCCTTCCAATCAAAC</pcr_primer_p1>
		<pcr_primer_p2>TGATCTAGAATTGCCGTAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TAAGTCATCCTTCCAATCAAACAGCTACGGTATCTGTACATATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCA</canonical_amplicon>
		<polymorphic_amplicon>TAAGTCATCCTTCCAATCAAACAGCTACGGTATCTGTACATATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACMGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32593</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>13711</contig_pos>
        <strand>+</strand>
        <context>TTTTATAGTT[C/T]AAAATTTAAR</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTT</left_flank>
        <right_flank>AAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTCAAAAACTCTTCCATGGGTACAACTCCCCGATTTCGAGGGATTTCGCTAGCGAAAAAGGTGTCCAGGGGTAGTTTTTGATGGGGAATTCAAATTTCTAGTTTCGAGTCGATTCTAGGCCACCAAACCTGAATAAATATGAGCACTGTCGATGAGCTGGACCGGAAAACGACGCGAGTCTTGTCAGTAACGAAACCGCTCTTCACCAGCGACCCTTTCCTCCACATATCCGAAATCCGGGTGTTAATATTTAGATGTCGTTTCTGTTCCTCCACATAAGTCATCCTTCCAATCAAACAGCTACGGTATCTGTACATATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCG</canonical>
            <polymorphic>TTCTCAAAAACTCTTCCATGGGTACAACTCCCCGATTTCGAGGGATTTCGCTAGCGAAAAAGGTGTCCAGGGGTAGTTTTTGATGGGGAATTCAAATTTCTAGTTTCGAGTCGATTCTAGGCCACCAAACCTGAATAAATATGAGCACTGTCGATGAGCTGGACCGGAAAACGACGCGAGTCTTGTCAGTAACGAAACCGCTCTTCACCAGCGACCCTTTCCTCCACATATCCGAAATCCGGGTGTTAATATTTAGATGTCGTTTCTGTTCCTCCACATAAGTCATCCTTCCAATCAAACAGCTACGGTATCTGTACATATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTYAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 493 7</canonical_bands>
                <polymorphic_bands>507 493</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>437 246 174 79 57 7</canonical_bands>
                <polymorphic_bands>437 246 174 86 57</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATATTCAAAGTGTTTCGAGAG</pcr_primer_p1>
		<pcr_primer_p2>GCTAAAGATGGCCTAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>667</pcr_amplicon_size>
		<canonical_amplicon>AGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGC</canonical_amplicon>
		<polymorphic_amplicon>AGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTYAAAATTTAAAGTTTTACGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32594</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>13721</contig_pos>
        <strand>+</strand>
        <context>YAAAATTTAA[A/G]GTTTTACGGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAA</left_flank>
        <right_flank>GTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTTCCATGGGTACAACTCCCCGATTTCGAGGGATTTCGCTAGCGAAAAAGGTGTCCAGGGGTAGTTTTTGATGGGGAATTCAAATTTCTAGTTTCGAGTCGATTCTAGGCCACCAAACCTGAATAAATATGAGCACTGTCGATGAGCTGGACCGGAAAACGACGCGAGTCTTGTCAGTAACGAAACCGCTCTTCACCAGCGACCCTTTCCTCCACATATCCGAAATCCGGGTGTTAATATTTAGATGTCGTTTCTGTTCCTCCACATAAGTCATCCTTCCAATCAAACAGCTACGGTATCTGTACATATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATG</canonical>
            <polymorphic>CTCTTCCATGGGTACAACTCCCCGATTTCGAGGGATTTCGCTAGCGAAAAAGGTGTCCAGGGGTAGTTTTTGATGGGGAATTCAAATTTCTAGTTTCGAGTCGATTCTAGGCCACCAAACCTGAATAAATATGAGCACTGTCGATGAGCTGGACCGGAAAACGACGCGAGTCTTGTCAGTAACGAAACCGCTCTTCACCAGCGACCCTTTCCTCCACATATCCGAAATCCGGGTGTTAATATTTAGATGTCGTTTCTGTTCCTCCACATAAGTCATCCTTCCAATCAAACAGCTACGGTATCTGTACATATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAARGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>503 490 7</canonical_bands>
                <polymorphic_bands>510 490</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATATTCAAAGTGTTTCGAGAG</pcr_primer_p1>
		<pcr_primer_p2>GCTAAAGATGGCCTAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>667</pcr_amplicon_size>
		<canonical_amplicon>AGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGAT</canonical_amplicon>
		<polymorphic_amplicon>AGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAARGTTTTACGGCAATTCTAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32595</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>13804</contig_pos>
        <strand></strand>
        <context>caaaaaacca[C/T]raaaatcgas</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCA</left_flank>
        <right_flank>AAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTCTAGTTTCGAGTCGATTCTAGGCCACCAAACCTGAATAAATATGAGCACTGTCGATGAGCTGGACCGGAAAACGACGCGAGTCTTGTCAGTAACGAAACCGCTCTTCACCAGCGACCCTTTCCTCCACATATCCGAAATCCGGGTGTTAATATTTAGATGTCGTTTCTGTTCCTCCACATAAGTCATCCTTCCAATCAAACAGCTACGGTATCTGTACATATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTAT</canonical>
            <polymorphic>AAATTTCTAGTTTCGAGTCGATTCTAGGCCACCAAACCTGAATAAATATGAGCACTGTCGATGAGCTGGACCGGAAAACGACGCGAGTCTTGTCAGTAACGAAACCGCTCTTCACCAGCGACCCTTTCCTCCACATATCCGAAATCCGGGTGTTAATATTTAGATGTCGTTTCTGTTCCTCCACATAAGTCATCCTTCCAATCAAACAGCTACGGTATCTGTACATATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCAYAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>240 163 125 60 52 50 35 34 32 31 31 31 24 23 19 19 16 8 7</canonical_bands>
                <polymorphic_bands>240 163 125 66 60 52 50 34 32 31 31 24 23 19 19 16 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTACGGCAATTCTAGATCA</pcr_primer_p1>
		<pcr_primer_p2>GCTAAAGATGGCCTAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>578</pcr_amplicon_size>
		<canonical_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCAYAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32596</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>13805</contig_pos>
        <strand></strand>
        <context>aaaaaaccay[A/G]aaaatcgasa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCAC</left_flank>
        <right_flank>AAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTCTAGTTTCGAGTCGATTCTAGGCCACCAAACCTGAATAAATATGAGCACTGTCGATGAGCTGGACCGGAAAACGACGCGAGTCTTGTCAGTAACGAAACCGCTCTTCACCAGCGACCCTTTCCTCCACATATCCGAAATCCGGGTGTTAATATTTAGATGTCGTTTCTGTTCCTCCACATAAGTCATCCTTCCAATCAAACAGCTACGGTATCTGTACATATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATT</canonical>
            <polymorphic>AATTTCTAGTTTCGAGTCGATTCTAGGCCACCAAACCTGAATAAATATGAGCACTGTCGATGAGCTGGACCGGAAAACGACGCGAGTCTTGTCAGTAACGAAACCGCTCTTCACCAGCGACCCTTTCCTCCACATATCCGAAATCCGGGTGTTAATATTTAGATGTCGTTTCTGTTCCTCCACATAAGTCATCCTTCCAATCAAACAGCTACGGTATCTGTACATATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACRAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTACGGCAATTCTAGATCA</pcr_primer_p1>
		<pcr_primer_p2>GCTAAAGATGGCCTAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>578</pcr_amplicon_size>
		<canonical_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACRAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32597</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>13814</contig_pos>
        <strand></strand>
        <context>yraaaatcga[C/G]attttcyaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGA</left_flank>
        <right_flank>ATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGAGTCGATTCTAGGCCACCAAACCTGAATAAATATGAGCACTGTCGATGAGCTGGACCGGAAAACGACGCGAGTCTTGTCAGTAACGAAACCGCTCTTCACCAGCGACCCTTTCCTCCACATATCCGAAATCCGGGTGTTAATATTTAGATGTCGTTTCTGTTCCTCCACATAAGTCATCCTTCCAATCAAACAGCTACGGTATCTGTACATATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAA</canonical>
            <polymorphic>TTTCGAGTCGATTCTAGGCCACCAAACCTGAATAAATATGAGCACTGTCGATGAGCTGGACCGGAAAACGACGCGAGTCTTGTCAGTAACGAAACCGCTCTTCACCAGCGACCCTTTCCTCCACATATCCGAAATCCGGGTGTTAATATTTAGATGTCGTTTCTGTTCCTCCACATAAGTCATCCTTCCAATCAAACAGCTACGGTATCTGTACATATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGASATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTACGGCAATTCTAGATCA</pcr_primer_p1>
		<pcr_primer_p2>GCTAAAGATGGCCTAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>578</pcr_amplicon_size>
		<canonical_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGASATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32598</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>13821</contig_pos>
        <strand></strand>
        <context>cgasattttc[T/C]aaaaatttgc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTC</left_flank>
        <right_flank>AAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGATTCTAGGCCACCAAACCTGAATAAATATGAGCACTGTCGATGAGCTGGACCGGAAAACGACGCGAGTCTTGTCAGTAACGAAACCGCTCTTCACCAGCGACCCTTTCCTCCACATATCCGAAATCCGGGTGTTAATATTTAGATGTCGTTTCTGTTCCTCCACATAAGTCATCCTTCCAATCAAACAGCTACGGTATCTGTACATATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCC</canonical>
            <polymorphic>TCGATTCTAGGCCACCAAACCTGAATAAATATGAGCACTGTCGATGAGCTGGACCGGAAAACGACGCGAGTCTTGTCAGTAACGAAACCGCTCTTCACCAGCGACCCTTTCCTCCACATATCCGAAATCCGGGTGTTAATATTTAGATGTCGTTTCTGTTCCTCCACATAAGTCATCCTTCCAATCAAACAGCTACGGTATCTGTACATATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCYAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTACGGCAATTCTAGATCA</pcr_primer_p1>
		<pcr_primer_p2>GCTAAAGATGGCCTAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>578</pcr_amplicon_size>
		<canonical_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCYAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32599</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>13836</contig_pos>
        <strand></strand>
        <context>atttgctcgg[G/A]tggcctagtg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGG</left_flank>
        <right_flank>TGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAACCTGAATAAATATGAGCACTGTCGATGAGCTGGACCGGAAAACGACGCGAGTCTTGTCAGTAACGAAACCGCTCTTCACCAGCGACCCTTTCCTCCACATATCCGAAATCCGGGTGTTAATATTTAGATGTCGTTTCTGTTCCTCCACATAAGTCATCCTTCCAATCAAACAGCTACGGTATCTGTACATATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCCTGAAAATCAATTTTG</canonical>
            <polymorphic>CAAACCTGAATAAATATGAGCACTGTCGATGAGCTGGACCGGAAAACGACGCGAGTCTTGTCAGTAACGAAACCGCTCTTCACCAGCGACCCTTTCCTCCACATATCCGAAATCCGGGTGTTAATATTTAGATGTCGTTTCTGTTCCTCCACATAAGTCATCCTTCCAATCAAACAGCTACGGTATCTGTACATATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGRTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCCTGAAAATCAATTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>495 185 177 143</canonical_bands>
                <polymorphic_bands>672 185 143</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>272 163 125 60 52 50 35 34 32 31 31 24 22 19 19 16 8 7</canonical_bands>
                <polymorphic_bands>272 163 125 60 52 50 43 34 32 31 31 24 22 19 19 16 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTACGGCAATTCTAGATCA</pcr_primer_p1>
		<pcr_primer_p2>GCTAAAGATGGCCTAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>578</pcr_amplicon_size>
		<canonical_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGRTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32600</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>13899</contig_pos>
        <strand></strand>
        <context>attccactcg[G/C]tggcaaactc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>ATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCG</left_flank>
        <right_flank>TGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAACGAAACCGCTCTTCACCAGCGACCCTTTCCTCCACATATCCGAAATCCGGGTGTTAATATTTAGATGTCGTTTCTGTTCCTCCACATAAGTCATCCTTCCAATCAAACAGCTACGGTATCTGTACATATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCCTGAAAATCAATTTTGAAGCACCTGAAAACCCCTAAAACCGTCGAAAAGCTCCAAAAAGCGAAATTTTTCAAAAATGTG</canonical>
            <polymorphic>GTAACGAAACCGCTCTTCACCAGCGACCCTTTCCTCCACATATCCGAAATCCGGGTGTTAATATTTAGATGTCGTTTCTGTTCCTCCACATAAGTCATCCTTCCAATCAAACAGCTACGGTATCTGTACATATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGSTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCCTGAAAATCAATTTTGAAGCACCTGAAAACCCCTAAAACCGTCGAAAAGCTCCAAAAAGCGAAATTTTTCAAAAATGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACNNNGTG</site>
                <isoschizomers>
                    <enzyme>AdeI</enzyme>
                    <enzyme>DraIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>277 163 125 58 52 50 35 34 32 31 31 24 19 19 19 16 8 7 0</canonical_bands>
                <polymorphic_bands>277 170 125 58 52 50 35 34 32 31 31 24 19 19 19 16 8 0</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTACGGCAATTCTAGATCA</pcr_primer_p1>
		<pcr_primer_p2>GCTAAAGATGGCCTAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>578</pcr_amplicon_size>
		<canonical_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGSTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32601</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>13920</contig_pos>
        <strand></strand>
        <context>tttttgcttt[A/T]gtttagagcw</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTT</left_flank>
        <right_flank>GTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCGACCCTTTCCTCCACATATCCGAAATCCGGGTGTTAATATTTAGATGTCGTTTCTGTTCCTCCACATAAGTCATCCTTCCAATCAAACAGCTACGGTATCTGTACATATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCCTGAAAATCAATTTTGAAGCACCTGAAAACCCCTAAAACCGTCGAAAAGCTCCAAAAAGCGAAATTTTTCAAAAATGTGCTTGGGTGGCCTAGTGTTATT</canonical>
            <polymorphic>AGCGACCCTTTCCTCCACATATCCGAAATCCGGGTGTTAATATTTAGATGTCGTTTCTGTTCCTCCACATAAGTCATCCTTCCAATCAAACAGCTACGGTATCTGTACATATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTWGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCCTGAAAATCAATTTTGAAGCACCTGAAAACCCCTAAAACCGTCGAAAAGCTCCAAAAAGCGAAATTTTTCAAAAATGTGCTTGGGTGGCCTAGTGTTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTACGGCAATTCTAGATCA</pcr_primer_p1>
		<pcr_primer_p2>GCTAAAGATGGCCTAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>578</pcr_amplicon_size>
		<canonical_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTWGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32602</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>13930</contig_pos>
        <strand></strand>
        <context>wgtttagagc[A/T]agaattcggg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGC</left_flank>
        <right_flank>AGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTCCACATATCCGAAATCCGGGTGTTAATATTTAGATGTCGTTTCTGTTCCTCCACATAAGTCATCCTTCCAATCAAACAGCTACGGTATCTGTACATATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCCTGAAAATCAATTTTGAAGCACCTGAAAACCCCTAAAACCGTCGAAAAGCTCCAAAAAGCGAAATTTTTCAAAAATGTGCTTGGGTGGCCTAGTGTTATTTTGGACATGC</canonical>
            <polymorphic>TCCTCCACATATCCGAAATCCGGGTGTTAATATTTAGATGTCGTTTCTGTTCCTCCACATAAGTCATCCTTCCAATCAAACAGCTACGGTATCTGTACATATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCWAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCCTGAAAATCAATTTTGAAGCACCTGAAAACCCCTAAAACCGTCGAAAAGCTCCAAAAAGCGAAATTTTTCAAAAATGTGCTTGGGTGGCCTAGTGTTATTTTGGACATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTACGGCAATTCTAGATCA</pcr_primer_p1>
		<pcr_primer_p2>GCTAAAGATGGCCTAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>578</pcr_amplicon_size>
		<canonical_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCWAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32603</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>13995</contig_pos>
        <strand></strand>
        <context>tctagcttct[C/A]aaactrccgt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCT</left_flank>
        <right_flank>AAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCTTCCAATCAAACAGCTACGGTATCTGTACATATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCCTGAAAATCAATTTTGAAGCACCTGAAAACCCCTAAAACCGTCGAAAAGCTCCAAAAAGCGAAATTTTTCAAAAATGTGCTTGGGTGGCCTAGTGTTATTTTGGACATGCAAATTTTGGAGAATCAACACCAGGGTTCGATTCCACTCGGTGGTAAACTTTTTTTGCTTTTCTTT</canonical>
            <polymorphic>ATCCTTCCAATCAAACAGCTACGGTATCTGTACATATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTMAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCCTGAAAATCAATTTTGAAGCACCTGAAAACCCCTAAAACCGTCGAAAAGCTCCAAAAAGCGAAATTTTTCAAAAATGTGCTTGGGTGGCCTAGTGTTATTTTGGACATGCAAATTTTGGAGAATCAACACCAGGGTTCGATTCCACTCGGTGGTAAACTTTTTTTGCTTTTCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTACGGCAATTCTAGATCA</pcr_primer_p1>
		<pcr_primer_p2>GCTAAAGATGGCCTAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>578</pcr_amplicon_size>
		<canonical_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTMAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32604</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>14001</contig_pos>
        <strand></strand>
        <context>ttctmaaact[A/G]ccgtatctcg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACT</left_flank>
        <right_flank>CCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAATCAAACAGCTACGGTATCTGTACATATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCCTGAAAATCAATTTTGAAGCACCTGAAAACCCCTAAAACCGTCGAAAAGCTCCAAAAAGCGAAATTTTTCAAAAATGTGCTTGGGTGGCCTAGTGTTATTTTGGACATGCAAATTTTGGAGAATCAACACCAGGGTTCGATTCCACTCGGTGGTAAACTTTTTTTGCTTTTCTTTTGAGCA</canonical>
            <polymorphic>CCAATCAAACAGCTACGGTATCTGTACATATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTRCCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCCTGAAAATCAATTTTGAAGCACCTGAAAACCCCTAAAACCGTCGAAAAGCTCCAAAAAGCGAAATTTTTCAAAAATGTGCTTGGGTGGCCTAGTGTTATTTTGGACATGCAAATTTTGGAGAATCAACACCAGGGTTCGATTCCACTCGGTGGTAAACTTTTTTTGCTTTTCTTTTGAGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>385 141 101 98 83 70 32 28 21 17 15 9</canonical_bands>
                <polymorphic_bands>417 141 101 98 83 70 28 21 17 15 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTACGGCAATTCTAGATCA</pcr_primer_p1>
		<pcr_primer_p2>GCTAAAGATGGCCTAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>578</pcr_amplicon_size>
		<canonical_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTRCCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32605</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>14019</contig_pos>
        <strand></strand>
        <context>tcgggctaca[A/G]taaycctaga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACA</left_flank>
        <right_flank>TAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCTGTACATATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCCTGAAAATCAATTTTGAAGCACCTGAAAACCCCTAAAACCGTCGAAAAGCTCCAAAAAGCGAAATTTTTCAAAAATGTGCTTGGGTGGCCTAGTGTTATTTTGGACATGCAAATTTTGGAGAATCAACACCAGGGTTCGATTCCACTCGGTGGTAAACTTTTTTTGCTTTTCTTTTGAGCAAGTTTAGGCTATTTTGAG</canonical>
            <polymorphic>TATCTGTACATATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACARTAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCCTGAAAATCAATTTTGAAGCACCTGAAAACCCCTAAAACCGTCGAAAAGCTCCAAAAAGCGAAATTTTTCAAAAATGTGCTTGGGTGGCCTAGTGTTATTTTGGACATGCAAATTTTGGAGAATCAACACCAGGGTTCGATTCCACTCGGTGGTAAACTTTTTTTGCTTTTCTTTTGAGCAAGTTTAGGCTATTTTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTACGGCAATTCTAGATCA</pcr_primer_p1>
		<pcr_primer_p2>GCTAAAGATGGCCTAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>578</pcr_amplicon_size>
		<canonical_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACARTAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32606</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>14023</contig_pos>
        <strand></strand>
        <context>gctacartaa[C/T]cctagaraga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAA</left_flank>
        <right_flank>CCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTACATATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCCTGAAAATCAATTTTGAAGCACCTGAAAACCCCTAAAACCGTCGAAAAGCTCCAAAAAGCGAAATTTTTCAAAAATGTGCTTGGGTGGCCTAGTGTTATTTTGGACATGCAAATTTTGGAGAATCAACACCAGGGTTCGATTCCACTCGGTGGTAAACTTTTTTTGCTTTTCTTTTGAGCAAGTTTAGGCTATTTTGAGCCGA</canonical>
            <polymorphic>TGTACATATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAAYCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCCTGAAAATCAATTTTGAAGCACCTGAAAACCCCTAAAACCGTCGAAAAGCTCCAAAAAGCGAAATTTTTCAAAAATGTGCTTGGGTGGCCTAGTGTTATTTTGGACATGCAAATTTTGGAGAATCAACACCAGGGTTCGATTCCACTCGGTGGTAAACTTTTTTTGCTTTTCTTTTGAGCAAGTTTAGGCTATTTTGAGCCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTACGGCAATTCTAGATCA</pcr_primer_p1>
		<pcr_primer_p2>GCTAAAGATGGCCTAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>578</pcr_amplicon_size>
		<canonical_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAAYCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32607</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>14030</contig_pos>
        <strand></strand>
        <context>taaycctaga[A/G]agacggtagt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGA</left_flank>
        <right_flank>AGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCCTGAAAATCAATTTTGAAGCACCTGAAAACCCCTAAAACCGTCGAAAAGCTCCAAAAAGCGAAATTTTTCAAAAATGTGCTTGGGTGGCCTAGTGTTATTTTGGACATGCAAATTTTGGAGAATCAACACCAGGGTTCGATTCCACTCGGTGGTAAACTTTTTTTGCTTTTCTTTTGAGCAAGTTTAGGCTATTTTGAGCCGATTTCAGC</canonical>
            <polymorphic>ATCCGCACGGCTCATATAAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGARAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCCTGAAAATCAATTTTGAAGCACCTGAAAACCCCTAAAACCGTCGAAAAGCTCCAAAAAGCGAAATTTTTCAAAAATGTGCTTGGGTGGCCTAGTGTTATTTTGGACATGCAAATTTTGGAGAATCAACACCAGGGTTCGATTCCACTCGGTGGTAAACTTTTTTTGCTTTTCTTTTGAGCAAGTTTAGGCTATTTTGAGCCGATTTCAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTACGGCAATTCTAGATCA</pcr_primer_p1>
		<pcr_primer_p2>GCTAAAGATGGCCTAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>578</pcr_amplicon_size>
		<canonical_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGARAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32608</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>14047</contig_pos>
        <strand></strand>
        <context>tagtcggaac[G/A]ttcgacttgg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAAC</left_flank>
        <right_flank>TTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCCTGAAAATCAATTTTGAAGCACCTGAAAACCCCTAAAACCGTCGAAAAGCTCCAAAAAGCGAAATTTTTCAAAAATGTGCTTGGGTGGCCTAGTGTTATTTTGGACATGCAAATTTTGGAGAATCAACACCAGGGTTCGATTCCACTCGGTGGTAAACTTTTTTTGCTTTTCTTTTGAGCAAGTTTAGGCTATTTTGAGCCGATTTCAGCGATTTTCAGATAAATCT</canonical>
            <polymorphic>AAATCTCTCGAAATGTCAGCTGCACATTGTCCAGGGATACGGTTTCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACRTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCCTGAAAATCAATTTTGAAGCACCTGAAAACCCCTAAAACCGTCGAAAAGCTCCAAAAAGCGAAATTTTTCAAAAATGTGCTTGGGTGGCCTAGTGTTATTTTGGACATGCAAATTTTGGAGAATCAACACCAGGGTTCGATTCCACTCGGTGGTAAACTTTTTTTGCTTTTCTTTTGAGCAAGTTTAGGCTATTTTGAGCCGATTTCAGCGATTTTCAGATAAATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTACGGCAATTCTAGATCA</pcr_primer_p1>
		<pcr_primer_p2>GCTAAAGATGGCCTAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>578</pcr_amplicon_size>
		<canonical_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACRTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32609</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>14091</contig_pos>
        <strand></strand>
        <context>tatactcatg[A/G]ytacttttgr</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATG</left_flank>
        <right_flank>TTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAAT</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCCTGAAAATCAATTTTGAAGCACCTGAAAACCCCTAAAACCGTCGAAAAGCTCCAAAAAGCGAAATTTTTCAAAAATGTGCTTGGGTGGCCTAGTGTTATTTTGGACATGCAAATTTTGGAGAATCAACACCAGGGTTCGATTCCACTCGGTGGTAAACTTTTTTTGCTTTTCTTTTGAGCAAGTTTAGGCTATTTTGAGCCGATTTCAGCGATTTTCAGATAAATCTAGGCTATTTCAGGCTATTTACGCCTAGATTATGCCATTTTAGGC</canonical>
            <polymorphic>TCCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGRTTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCCTGAAAATCAATTTTGAAGCACCTGAAAACCCCTAAAACCGTCGAAAAGCTCCAAAAAGCGAAATTTTTCAAAAATGTGCTTGGGTGGCCTAGTGTTATTTTGGACATGCAAATTTTGGAGAATCAACACCAGGGTTCGATTCCACTCGGTGGTAAACTTTTTTTGCTTTTCTTTTGAGCAAGTTTAGGCTATTTTGAGCCGATTTCAGCGATTTTCAGATAAATCTAGGCTATTTCAGGCTATTTACGCCTAGATTATGCCATTTTAGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>495 362 143</canonical_bands>
                <polymorphic_bands>638 362</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>285 209 108 85 76 64 62 60 24 17 10</canonical_bands>
                <polymorphic_bands>285 209 108 88 85 76 62 60 17 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTACGGCAATTCTAGATCA</pcr_primer_p1>
		<pcr_primer_p2>GCTAAAGATGGCCTAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>578</pcr_amplicon_size>
		<canonical_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGRTTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32610</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>14092</contig_pos>
        <strand></strand>
        <context>atactcatgr[T/C]tacttttgra</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGA</left_flank>
        <right_flank>TACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCCTGAAAATCAATTTTGAAGCACCTGAAAACCCCTAAAACCGTCGAAAAGCTCCAAAAAGCGAAATTTTTCAAAAATGTGCTTGGGTGGCCTAGTGTTATTTTGGACATGCAAATTTTGGAGAATCAACACCAGGGTTCGATTCCACTCGGTGGTAAACTTTTTTTGCTTTTCTTTTGAGCAAGTTTAGGCTATTTTGAGCCGATTTCAGCGATTTTCAGATAAATCTAGGCTATTTCAGGCTATTTACGCCTAGATTATGCCATTTTAGGCC</canonical>
            <polymorphic>CCACAGTCTCCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGAYTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCCTGAAAATCAATTTTGAAGCACCTGAAAACCCCTAAAACCGTCGAAAAGCTCCAAAAAGCGAAATTTTTCAAAAATGTGCTTGGGTGGCCTAGTGTTATTTTGGACATGCAAATTTTGGAGAATCAACACCAGGGTTCGATTCCACTCGGTGGTAAACTTTTTTTGCTTTTCTTTTGAGCAAGTTTAGGCTATTTTGAGCCGATTTCAGCGATTTTCAGATAAATCTAGGCTATTTCAGGCTATTTACGCCTAGATTATGCCATTTTAGGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTACGGCAATTCTAGATCA</pcr_primer_p1>
		<pcr_primer_p2>GCTAAAGATGGCCTAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>578</pcr_amplicon_size>
		<canonical_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGAYTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32611</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>14101</contig_pos>
        <strand></strand>
        <context>rytacttttg[A/G]awattttttg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTG</left_flank>
        <right_flank>ATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATC</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCCTGAAAATCAATTTTGAAGCACCTGAAAACCCCTAAAACCGTCGAAAAGCTCCAAAAAGCGAAATTTTTCAAAAATGTGCTTGGGTGGCCTAGTGTTATTTTGGACATGCAAATTTTGGAGAATCAACACCAGGGTTCGATTCCACTCGGTGGTAAACTTTTTTTGCTTTTCTTTTGAGCAAGTTTAGGCTATTTTGAGCCGATTTCAGCGATTTTCAGATAAATCTAGGCTATTTCAGGCTATTTACGCCTAGATTATGCCATTTTAGGCCAATTTCTTG</canonical>
            <polymorphic>CCTCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGRATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCCTGAAAATCAATTTTGAAGCACCTGAAAACCCCTAAAACCGTCGAAAAGCTCCAAAAAGCGAAATTTTTCAAAAATGTGCTTGGGTGGCCTAGTGTTATTTTGGACATGCAAATTTTGGAGAATCAACACCAGGGTTCGATTCCACTCGGTGGTAAACTTTTTTTGCTTTTCTTTTGAGCAAGTTTAGGCTATTTTGAGCCGATTTCAGCGATTTTCAGATAAATCTAGGCTATTTCAGGCTATTTACGCCTAGATTATGCCATTTTAGGCCAATTTCTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTACGGCAATTCTAGATCA</pcr_primer_p1>
		<pcr_primer_p2>GCTAAAGATGGCCTAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>578</pcr_amplicon_size>
		<canonical_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGRATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32612</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>14103</contig_pos>
        <strand></strand>
        <context>tacttttgra[T/A]attttttgga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAA</left_flank>
        <right_flank>ATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTC</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCCTGAAAATCAATTTTGAAGCACCTGAAAACCCCTAAAACCGTCGAAAAGCTCCAAAAAGCGAAATTTTTCAAAAATGTGCTTGGGTGGCCTAGTGTTATTTTGGACATGCAAATTTTGGAGAATCAACACCAGGGTTCGATTCCACTCGGTGGTAAACTTTTTTTGCTTTTCTTTTGAGCAAGTTTAGGCTATTTTGAGCCGATTTCAGCGATTTTCAGATAAATCTAGGCTATTTCAGGCTATTTACGCCTAGATTATGCCATTTTAGGCCAATTTCTTGGC</canonical>
            <polymorphic>TCGATACCAATTACCGTATCGCCGGGTTTAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAAWATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCCTGAAAATCAATTTTGAAGCACCTGAAAACCCCTAAAACCGTCGAAAAGCTCCAAAAAGCGAAATTTTTCAAAAATGTGCTTGGGTGGCCTAGTGTTATTTTGGACATGCAAATTTTGGAGAATCAACACCAGGGTTCGATTCCACTCGGTGGTAAACTTTTTTTGCTTTTCTTTTGAGCAAGTTTAGGCTATTTTGAGCCGATTTCAGCGATTTTCAGATAAATCTAGGCTATTTCAGGCTATTTACGCCTAGATTATGCCATTTTAGGCCAATTTCTTGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTACGGCAATTCTAGATCA</pcr_primer_p1>
		<pcr_primer_p2>GCTAAAGATGGCCTAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>578</pcr_amplicon_size>
		<canonical_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAAWATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32613</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>14131</contig_pos>
        <strand></strand>
        <context>agtttgaccc[A/T]aaaattgaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCC</left_flank>
        <right_flank>AAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCCTGAAAATCAATTTTGAAGCACCTGAAAACCCCTAAAACCGTCGAAAAGCTCCAAAAAGCGAAATTTTTCAAAAATGTGCTTGGGTGGCCTAGTGTTATTTTGGACATGCAAATTTTGGAGAATCAACACCAGGGTTCGATTCCACTCGGTGGTAAACTTTTTTTGCTTTTCTTTTGAGCAAGTTTAGGCTATTTTGAGCCGATTTCAGCGATTTTCAGATAAATCTAGGCTATTTCAGGCTATTTACGCCTAGATTATGCCATTTTAGGCCAATTTCTTGGCTCCAACTCACCCCCATCTCCTTGCCAAC</canonical>
            <polymorphic>TAAGATATTCAAAGTGTTTCGAGAGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCWAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCCTGAAAATCAATTTTGAAGCACCTGAAAACCCCTAAAACCGTCGAAAAGCTCCAAAAAGCGAAATTTTTCAAAAATGTGCTTGGGTGGCCTAGTGTTATTTTGGACATGCAAATTTTGGAGAATCAACACCAGGGTTCGATTCCACTCGGTGGTAAACTTTTTTTGCTTTTCTTTTGAGCAAGTTTAGGCTATTTTGAGCCGATTTCAGCGATTTTCAGATAAATCTAGGCTATTTCAGGCTATTTACGCCTAGATTATGCCATTTTAGGCCAATTTCTTGGCTCCAACTCACCCCCATCTCCTTGCCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTACGGCAATTCTAGATCA</pcr_primer_p1>
		<pcr_primer_p2>GCTAAAGATGGCCTAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>578</pcr_amplicon_size>
		<canonical_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCWAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32614</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>14154</contig_pos>
        <strand></strand>
        <context>accgtatctc[G/T]agctacagta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTC</left_flank>
        <right_flank>AGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCG</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCCTGAAAATCAATTTTGAAGCACCTGAAAACCCCTAAAACCGTCGAAAAGCTCCAAAAAGCGAAATTTTTCAAAAATGTGCTTGGGTGGCCTAGTGTTATTTTGGACATGCAAATTTTGGAGAATCAACACCAGGGTTCGATTCCACTCGGTGGTAAACTTTTTTTGCTTTTCTTTTGAGCAAGTTTAGGCTATTTTGAGCCGATTTCAGCGATTTTCAGATAAATCTAGGCTATTTCAGGCTATTTACGCCTAGATTATGCCATTTTAGGCCAATTTCTTGGCTCCAACTCACCCCCATCTCCTTGCCAACAGTTGGTGCTGGTGTACAACACG</canonical>
            <polymorphic>AGACCGGGAAAGGATCGGCAGATGCTGATTATGCAGCGCTGGAAATTTTTATAGTTTAAAATTTAAAGTTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCKAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGCCTATTCTAGACTAAATAAGCCTGAAAATCAATTTTGAAGCACCTGAAAACCCCTAAAACCGTCGAAAAGCTCCAAAAAGCGAAATTTTTCAAAAATGTGCTTGGGTGGCCTAGTGTTATTTTGGACATGCAAATTTTGGAGAATCAACACCAGGGTTCGATTCCACTCGGTGGTAAACTTTTTTTGCTTTTCTTTTGAGCAAGTTTAGGCTATTTTGAGCCGATTTCAGCGATTTTCAGATAAATCTAGGCTATTTCAGGCTATTTACGCCTAGATTATGCCATTTTAGGCCAATTTCTTGGCTCCAACTCACCCCCATCTCCTTGCCAACAGTTGGTGCTGGTGTACAACACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 177 177 143</canonical_bands>
                <polymorphic_bands>646 177 177</polymorphic_bands>
            </assay>
            <assay>
                <site>CTCGAG</site>
                <isoschizomers>
                    <enzyme>BssHI</enzyme>
                    <enzyme>PaeR7I</enzyme>
                    <enzyme>SciI</enzyme>
                    <enzyme>Sfr274I</enzyme>
                    <enzyme>SlaI</enzyme>
                    <enzyme>TliI</enzyme>
                    <enzyme>XhoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>196 170 163 157 103 95 58 40 18</canonical_bands>
                <polymorphic_bands>196 170 163 157 143 95 58 18</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>348 209 108 82 76 64 62 24 17 10</canonical_bands>
                <polymorphic_bands>348 209 108 82 81 76 62 24 10</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTACGGCAATTCTAGATCA</pcr_primer_p1>
		<pcr_primer_p2>GCTAAAGATGGCCTAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>578</pcr_amplicon_size>
		<canonical_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCGAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTACGGCAATTCTAGATCAAAATAATCCCAAAAATCAGTTCTAAAACACTTAAAAACTCCCTAAAAAGTCAAAAAACCACAAAAATCGACATTTTCTAAAAATTTGCTCGGGTGGCCTAGTGGGATTTTGGATATGCAAACTTTCGAAACAACACCAGGGTTCGATTCCACTCGGTGGCAAACTCTTTTTGCTTTAGTTTAGAGCAAGAATTCGGGGTTTCTAGATGGTTCTAGACTCATTTTTAGCATTTTTGGGTTACTCTAGCTTCTCAAACTACCGTATCTCGGGCTACAATAACCCTAGAAAGACGGTAGTCGGAACGTTCGACTTGGCTTGTCACGAGCTTTCAAATGAGTATACTCATGATTACTTTTGAATATTTTTTGGATTACTGTAGTTTGACCCAAAAATTGAATCTACCGTATCTCKAGCTACAGTAATTCTAGAGGTATGAAATTTGGAGCATTCGACTTGACTCGTTGAGCGCTTTCAAATGAGTATACTCATGACTATTTTTGGAAATTTTTTTGGATTACTGTAGTTTTGTTTTTGGGATGTTTTAGGCCATCTTTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32621</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>21780</contig_pos>
        <strand></strand>
        <context>ggccatttta[G/A]gacagttttg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GCCATTTCGGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTA</left_flank>
        <right_flank>GACAGTTTTGGCGATTTTTTTGACTATTTTCAGCCGATTTACAGCTCTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGGCCATTTTGGACCATTTCTAGGCTATGTTAGACTATTTTTAGATCATTCTGGGACTATTTTTTGTTTTAAAATGGTCTAAAAGTGACCAAAAATGATCCAAATGGCTGGAAAACGGCCGAGAAAAATGATCCAAAATGGCTTAAAAAATAGTCCAGAGACCATTTGCAGCTATATTTGGACCATTTTTGGGTCATTTTAGGTCATATTTTTCAGCCGATTTCAGACCCTTTTGGACCATATCAACGTATTATTGGACTATTTTTAGGCTATTTAGGACCATTTCTAGACCATGTTAGACTATTTTTAGGCTATTTCAGGTCATTTTTAGGTCATTTTGGGCTACTTTTAGGTCATGTTTAGGCTAGTTTAGGTCATTTTGGACTATTTTTGGACTATTTGGGACCCCTTTGGGCCATTTTAAAGCCATATTGGACTATTTGTAAGCCATTTCGGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATTTTCAGCCGATTTACAGCTCTTTTGGACCATTTTAAGGTTATATTGGACTATTTTAGACTTTTTTTTTGACAATTTTTAAGCCATTTTGAATCATTTTCAGACAATTTCAGGTTATTTTGGCCCGATTCTAGGACAGTTTTGGCTGTTTTGGACTATTTTTCAGGCCATTGTTAGGCTATTTTCAGCCAATTTATAAACCTTTTCAGACCATTTTGGTCCATTTTGTACCATTTTCCGACCAATTTAGAGCATTTTCGACTACTTTAGATAATTTTCAGCTAATTTCAGCCAATTTCTACACCATTTTGGACTAGTTCAACTTTTAGAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACC</canonical>
            <polymorphic>TTTTGGCCATTTTGGACCATTTCTAGGCTATGTTAGACTATTTTTAGATCATTCTGGGACTATTTTTTGTTTTAAAATGGTCTAAAAGTGACCAAAAATGATCCAAATGGCTGGAAAACGGCCGAGAAAAATGATCCAAAATGGCTTAAAAAATAGTCCAGAGACCATTTGCAGCTATATTTGGACCATTTTTGGGTCATTTTAGGTCATATTTTTCAGCCGATTTCAGACCCTTTTGGACCATATCAACGTATTATTGGACTATTTTTAGGCTATTTAGGACCATTTCTAGACCATGTTAGACTATTTTTAGGCTATTTCAGGTCATTTTTAGGTCATTTTGGGCTACTTTTAGGTCATGTTTAGGCTAGTTTAGGTCATTTTGGACTATTTTTGGACTATTTGGGACCCCTTTGGGCCATTTTAAAGCCATATTGGACTATTTGTAAGCCATTTCGGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTARGACAGTTTTGGCGATTTTTTTGACTATTTTCAGCCGATTTACAGCTCTTTTGGACCATTTTAAGGTTATATTGGACTATTTTAGACTTTTTTTTTGACAATTTTTAAGCCATTTTGAATCATTTTCAGACAATTTCAGGTTATTTTGGCCCGATTCTAGGACAGTTTTGGCTGTTTTGGACTATTTTTCAGGCCATTGTTAGGCTATTTTCAGCCAATTTATAAACCTTTTCAGACCATTTTGGTCCATTTTGTACCATTTTCCGACCAATTTAGAGCATTTTCGACTACTTTAGATAATTTTCAGCTAATTTCAGCCAATTTCTACACCATTTTGGACTAGTTCAACTTTTAGAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAGACCATTTGCAGCTAT</pcr_primer_p1>
		<pcr_primer_p2>TCAATAATTTGAAGGTAGAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>941</pcr_amplicon_size>
		<canonical_amplicon>CAGAGACCATTTGCAGCTATATTTGGACCATTTTTGGGTCATTTTAGGTCATATTTTTCAGCCGATTTCAGACCCTTTTGGACCATATCAACGTATTATTGGACTATTTTTAGGCTATTTAGGACCATTTCTAGACCATGTTAGACTATTTTTAGGCTATTTCAGGTCATTTTTAGGTCATTTTGGGCTACTTTTAGGTCATGTTTAGGCTAGTTTAGGTCATTTTGGACTATTTTTGGACTATTTGGGACCCCTTTGGGCCATTTTAAAGCCATATTGGACTATTTGTAAGCCATTTCGGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGA</canonical_amplicon>
		<polymorphic_amplicon>CAGAGACCATTTGCAGCTATATTTGGACCATTTTTGGGTCATTTTAGGTCATATTTTTCAGCCGATTTCAGACCCTTTTGGACCATATCAACGTATTATTGGACTATTTTTAGGCTATTTAGGACCATTTCTAGACCATGTTAGACTATTTTTAGGCTATTTCAGGTCATTTTTAGGTCATTTTGGGCTACTTTTAGGTCATGTTTAGGCTAGTTTAGGTCATTTTGGACTATTTTTGGACTATTTGGGACCCCTTTGGGCCATTTTAAAGCCATATTGGACTATTTGTAAGCCATTTCGGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTARGACAGTTTTGGCGATTTTTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32622</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>21809</contig_pos>
        <strand></strand>
        <context>tttgactatt[T/C]tcagcmgatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATT</left_flank>
        <right_flank>TCAGCCGATTTACAGCTCTTTTGGACCATTTTAAGGTTATATTGGACTAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTTAGACTATTTTTAGATCATTCTGGGACTATTTTTTGTTTTAAAATGGTCTAAAAGTGACCAAAAATGATCCAAATGGCTGGAAAACGGCCGAGAAAAATGATCCAAAATGGCTTAAAAAATAGTCCAGAGACCATTTGCAGCTATATTTGGACCATTTTTGGGTCATTTTAGGTCATATTTTTCAGCCGATTTCAGACCCTTTTGGACCATATCAACGTATTATTGGACTATTTTTAGGCTATTTAGGACCATTTCTAGACCATGTTAGACTATTTTTAGGCTATTTCAGGTCATTTTTAGGTCATTTTGGGCTACTTTTAGGTCATGTTTAGGCTAGTTTAGGTCATTTTGGACTATTTTTGGACTATTTGGGACCCCTTTGGGCCATTTTAAAGCCATATTGGACTATTTGTAAGCCATTTCGGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATTTTCAGCCGATTTACAGCTCTTTTGGACCATTTTAAGGTTATATTGGACTATTTTAGACTTTTTTTTTGACAATTTTTAAGCCATTTTGAATCATTTTCAGACAATTTCAGGTTATTTTGGCCCGATTCTAGGACAGTTTTGGCTGTTTTGGACTATTTTTCAGGCCATTGTTAGGCTATTTTCAGCCAATTTATAAACCTTTTCAGACCATTTTGGTCCATTTTGTACCATTTTCCGACCAATTTAGAGCATTTTCGACTACTTTAGATAATTTTCAGCTAATTTCAGCCAATTTCTACACCATTTTGGACTAGTTCAACTTTTAGAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGG</canonical>
            <polymorphic>ATGTTAGACTATTTTTAGATCATTCTGGGACTATTTTTTGTTTTAAAATGGTCTAAAAGTGACCAAAAATGATCCAAATGGCTGGAAAACGGCCGAGAAAAATGATCCAAAATGGCTTAAAAAATAGTCCAGAGACCATTTGCAGCTATATTTGGACCATTTTTGGGTCATTTTAGGTCATATTTTTCAGCCGATTTCAGACCCTTTTGGACCATATCAACGTATTATTGGACTATTTTTAGGCTATTTAGGACCATTTCTAGACCATGTTAGACTATTTTTAGGCTATTTCAGGTCATTTTTAGGTCATTTTGGGCTACTTTTAGGTCATGTTTAGGCTAGTTTAGGTCATTTTGGACTATTTTTGGACTATTTGGGACCCCTTTGGGCCATTTTAAAGCCATATTGGACTATTTGTAAGCCATTTCGGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATTYTCAGCCGATTTACAGCTCTTTTGGACCATTTTAAGGTTATATTGGACTATTTTAGACTTTTTTTTTGACAATTTTTAAGCCATTTTGAATCATTTTCAGACAATTTCAGGTTATTTTGGCCCGATTCTAGGACAGTTTTGGCTGTTTTGGACTATTTTTCAGGCCATTGTTAGGCTATTTTCAGCCAATTTATAAACCTTTTCAGACCATTTTGGTCCATTTTGTACCATTTTCCGACCAATTTAGAGCATTTTCGACTACTTTAGATAATTTTCAGCTAATTTCAGCCAATTTCTACACCATTTTGGACTAGTTCAACTTTTAGAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAGACCATTTGCAGCTAT</pcr_primer_p1>
		<pcr_primer_p2>TCAATAATTTGAAGGTAGAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>941</pcr_amplicon_size>
		<canonical_amplicon>CAGAGACCATTTGCAGCTATATTTGGACCATTTTTGGGTCATTTTAGGTCATATTTTTCAGCCGATTTCAGACCCTTTTGGACCATATCAACGTATTATTGGACTATTTTTAGGCTATTTAGGACCATTTCTAGACCATGTTAGACTATTTTTAGGCTATTTCAGGTCATTTTTAGGTCATTTTGGGCTACTTTTAGGTCATGTTTAGGCTAGTTTAGGTCATTTTGGACTATTTTTGGACTATTTGGGACCCCTTTGGGCCATTTTAAAGCCATATTGGACTATTTGTAAGCCATTTCGGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATTTTCAGCCGATTTACAGCTCTTTTG</canonical_amplicon>
		<polymorphic_amplicon>CAGAGACCATTTGCAGCTATATTTGGACCATTTTTGGGTCATTTTAGGTCATATTTTTCAGCCGATTTCAGACCCTTTTGGACCATATCAACGTATTATTGGACTATTTTTAGGCTATTTAGGACCATTTCTAGACCATGTTAGACTATTTTTAGGCTATTTCAGGTCATTTTTAGGTCATTTTGGGCTACTTTTAGGTCATGTTTAGGCTAGTTTAGGTCATTTTGGACTATTTTTGGACTATTTGGGACCCCTTTGGGCCATTTTAAAGCCATATTGGACTATTTGTAAGCCATTTCGGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATTYTCAGCCGATTTACAGCTCTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32623</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>21815</contig_pos>
        <strand></strand>
        <context>tattytcagc[C/A]gatttacagc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATTTTCAGC</left_flank>
        <right_flank>GATTTACAGCTCTTTTGGACCATTTTAAGGTTATATTGGACTATTTTAGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACTATTTTTAGATCATTCTGGGACTATTTTTTGTTTTAAAATGGTCTAAAAGTGACCAAAAATGATCCAAATGGCTGGAAAACGGCCGAGAAAAATGATCCAAAATGGCTTAAAAAATAGTCCAGAGACCATTTGCAGCTATATTTGGACCATTTTTGGGTCATTTTAGGTCATATTTTTCAGCCGATTTCAGACCCTTTTGGACCATATCAACGTATTATTGGACTATTTTTAGGCTATTTAGGACCATTTCTAGACCATGTTAGACTATTTTTAGGCTATTTCAGGTCATTTTTAGGTCATTTTGGGCTACTTTTAGGTCATGTTTAGGCTAGTTTAGGTCATTTTGGACTATTTTTGGACTATTTGGGACCCCTTTGGGCCATTTTAAAGCCATATTGGACTATTTGTAAGCCATTTCGGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATTTTCAGCCGATTTACAGCTCTTTTGGACCATTTTAAGGTTATATTGGACTATTTTAGACTTTTTTTTTGACAATTTTTAAGCCATTTTGAATCATTTTCAGACAATTTCAGGTTATTTTGGCCCGATTCTAGGACAGTTTTGGCTGTTTTGGACTATTTTTCAGGCCATTGTTAGGCTATTTTCAGCCAATTTATAAACCTTTTCAGACCATTTTGGTCCATTTTGTACCATTTTCCGACCAATTTAGAGCATTTTCGACTACTTTAGATAATTTTCAGCTAATTTCAGCCAATTTCTACACCATTTTGGACTAGTTCAACTTTTAGAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATT</canonical>
            <polymorphic>GACTATTTTTAGATCATTCTGGGACTATTTTTTGTTTTAAAATGGTCTAAAAGTGACCAAAAATGATCCAAATGGCTGGAAAACGGCCGAGAAAAATGATCCAAAATGGCTTAAAAAATAGTCCAGAGACCATTTGCAGCTATATTTGGACCATTTTTGGGTCATTTTAGGTCATATTTTTCAGCCGATTTCAGACCCTTTTGGACCATATCAACGTATTATTGGACTATTTTTAGGCTATTTAGGACCATTTCTAGACCATGTTAGACTATTTTTAGGCTATTTCAGGTCATTTTTAGGTCATTTTGGGCTACTTTTAGGTCATGTTTAGGCTAGTTTAGGTCATTTTGGACTATTTTTGGACTATTTGGGACCCCTTTGGGCCATTTTAAAGCCATATTGGACTATTTGTAAGCCATTTCGGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATTTTCAGCMGATTTACAGCTCTTTTGGACCATTTTAAGGTTATATTGGACTATTTTAGACTTTTTTTTTGACAATTTTTAAGCCATTTTGAATCATTTTCAGACAATTTCAGGTTATTTTGGCCCGATTCTAGGACAGTTTTGGCTGTTTTGGACTATTTTTCAGGCCATTGTTAGGCTATTTTCAGCCAATTTATAAACCTTTTCAGACCATTTTGGTCCATTTTGTACCATTTTCCGACCAATTTAGAGCATTTTCGACTACTTTAGATAATTTTCAGCTAATTTCAGCCAATTTCTACACCATTTTGGACTAGTTCAACTTTTAGAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>93 75 64 57 53 53 51 45 42 42 40 31 31 30 30 23 22 22 22 21 21 20 11 11 11 11 11 11 10 10 10 10 6</canonical_bands>
                <polymorphic_bands>93 75 64 57 53 53 53 51 45 42 40 31 31 30 30 23 22 22 22 21 21 20 11 11 11 11 11 10 10 10 10 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAGACCATTTGCAGCTAT</pcr_primer_p1>
		<pcr_primer_p2>TCAATAATTTGAAGGTAGAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>941</pcr_amplicon_size>
		<canonical_amplicon>CAGAGACCATTTGCAGCTATATTTGGACCATTTTTGGGTCATTTTAGGTCATATTTTTCAGCCGATTTCAGACCCTTTTGGACCATATCAACGTATTATTGGACTATTTTTAGGCTATTTAGGACCATTTCTAGACCATGTTAGACTATTTTTAGGCTATTTCAGGTCATTTTTAGGTCATTTTGGGCTACTTTTAGGTCATGTTTAGGCTAGTTTAGGTCATTTTGGACTATTTTTGGACTATTTGGGACCCCTTTGGGCCATTTTAAAGCCATATTGGACTATTTGTAAGCCATTTCGGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATTTTCAGCCGATTTACAGCTCTTTTGGACCAT</canonical_amplicon>
		<polymorphic_amplicon>CAGAGACCATTTGCAGCTATATTTGGACCATTTTTGGGTCATTTTAGGTCATATTTTTCAGCCGATTTCAGACCCTTTTGGACCATATCAACGTATTATTGGACTATTTTTAGGCTATTTAGGACCATTTCTAGACCATGTTAGACTATTTTTAGGCTATTTCAGGTCATTTTTAGGTCATTTTGGGCTACTTTTAGGTCATGTTTAGGCTAGTTTAGGTCATTTTGGACTATTTTTGGACTATTTGGGACCCCTTTGGGCCATTTTAAAGCCATATTGGACTATTTGTAAGCCATTTCGGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATTTTCAGCMGATTTACAGCTCTTTTGGACCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32624</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>21926</contig_pos>
        <strand></strand>
        <context>caggttattt[T/C]ggcccgatty</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GACAATTTTTAAGCCATTTTGAATCATTTTCAGACAATTTCAGGTTATTT</left_flank>
        <right_flank>GGCCCGATTCTAGGACAGTTTTGGCTGTTTTGGACTATTTTTCAGGCCAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAAAATAGTCCAGAGACCATTTGCAGCTATATTTGGACCATTTTTGGGTCATTTTAGGTCATATTTTTCAGCCGATTTCAGACCCTTTTGGACCATATCAACGTATTATTGGACTATTTTTAGGCTATTTAGGACCATTTCTAGACCATGTTAGACTATTTTTAGGCTATTTCAGGTCATTTTTAGGTCATTTTGGGCTACTTTTAGGTCATGTTTAGGCTAGTTTAGGTCATTTTGGACTATTTTTGGACTATTTGGGACCCCTTTGGGCCATTTTAAAGCCATATTGGACTATTTGTAAGCCATTTCGGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATTTTCAGCCGATTTACAGCTCTTTTGGACCATTTTAAGGTTATATTGGACTATTTTAGACTTTTTTTTTGACAATTTTTAAGCCATTTTGAATCATTTTCAGACAATTTCAGGTTATTTTGGCCCGATTCTAGGACAGTTTTGGCTGTTTTGGACTATTTTTCAGGCCATTGTTAGGCTATTTTCAGCCAATTTATAAACCTTTTCAGACCATTTTGGTCCATTTTGTACCATTTTCCGACCAATTTAGAGCATTTTCGACTACTTTAGATAATTTTCAGCTAATTTCAGCCAATTTCTACACCATTTTGGACTAGTTCAACTTTTAGAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGAGCAACGTGGCGAGCACATCATGCGGTCCAATCGCCTTCGCAATGAAG</canonical>
            <polymorphic>TAAAAAATAGTCCAGAGACCATTTGCAGCTATATTTGGACCATTTTTGGGTCATTTTAGGTCATATTTTTCAGCCGATTTCAGACCCTTTTGGACCATATCAACGTATTATTGGACTATTTTTAGGCTATTTAGGACCATTTCTAGACCATGTTAGACTATTTTTAGGCTATTTCAGGTCATTTTTAGGTCATTTTGGGCTACTTTTAGGTCATGTTTAGGCTAGTTTAGGTCATTTTGGACTATTTTTGGACTATTTGGGACCCCTTTGGGCCATTTTAAAGCCATATTGGACTATTTGTAAGCCATTTCGGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATTTTCAGCCGATTTACAGCTCTTTTGGACCATTTTAAGGTTATATTGGACTATTTTAGACTTTTTTTTTGACAATTTTTAAGCCATTTTGAATCATTTTCAGACAATTTCAGGTTATTTYGGCCCGATTCTAGGACAGTTTTGGCTGTTTTGGACTATTTTTCAGGCCATTGTTAGGCTATTTTCAGCCAATTTATAAACCTTTTCAGACCATTTTGGTCCATTTTGTACCATTTTCCGACCAATTTAGAGCATTTTCGACTACTTTAGATAATTTTCAGCTAATTTCAGCCAATTTCTACACCATTTTGGACTAGTTCAACTTTTAGAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGAGCAACGTGGCGAGCACATCATGCGGTCCAATCGCCTTCGCAATGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAGACCATTTGCAGCTAT</pcr_primer_p1>
		<pcr_primer_p2>TCAATAATTTGAAGGTAGAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>941</pcr_amplicon_size>
		<canonical_amplicon>CAGAGACCATTTGCAGCTATATTTGGACCATTTTTGGGTCATTTTAGGTCATATTTTTCAGCCGATTTCAGACCCTTTTGGACCATATCAACGTATTATTGGACTATTTTTAGGCTATTTAGGACCATTTCTAGACCATGTTAGACTATTTTTAGGCTATTTCAGGTCATTTTTAGGTCATTTTGGGCTACTTTTAGGTCATGTTTAGGCTAGTTTAGGTCATTTTGGACTATTTTTGGACTATTTGGGACCCCTTTGGGCCATTTTAAAGCCATATTGGACTATTTGTAAGCCATTTCGGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATTTTCAGCCGATTTACAGCTCTTTTGGACCATTTTAAGGTTATATTGGACTATTTTAGACTTTTTTTTTGACAATTTTTAAGCCATTTTGAATCATTTTCAGACAATTTCAGGTTATTTTGGCCCGATTCTAGGACAGTTTTGGCTGTTTTGGACTATTTTTCAGGCCATTGTTAGGCTATTTTCAGCCAATTTATAAACCTTTTCAGACCATTTTGGTCCATTTTGTACCATTTTCCGACCAATTTAGAGCATTTTCGACTACTTTAGATAATTTTCAGCTAATTTCAGCCAATTTCTACACCATTTTGGACTAGTTCAACTTTTAGAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGA</canonical_amplicon>
		<polymorphic_amplicon>CAGAGACCATTTGCAGCTATATTTGGACCATTTTTGGGTCATTTTAGGTCATATTTTTCAGCCGATTTCAGACCCTTTTGGACCATATCAACGTATTATTGGACTATTTTTAGGCTATTTAGGACCATTTCTAGACCATGTTAGACTATTTTTAGGCTATTTCAGGTCATTTTTAGGTCATTTTGGGCTACTTTTAGGTCATGTTTAGGCTAGTTTAGGTCATTTTGGACTATTTTTGGACTATTTGGGACCCCTTTGGGCCATTTTAAAGCCATATTGGACTATTTGTAAGCCATTTCGGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATTTTCAGCCGATTTACAGCTCTTTTGGACCATTTTAAGGTTATATTGGACTATTTTAGACTTTTTTTTTGACAATTTTTAAGCCATTTTGAATCATTTTCAGACAATTTCAGGTTATTTYGGCCCGATTCTAGGACAGTTTTGGCTGTTTTGGACTATTTTTCAGGCCATTGTTAGGCTATTTTCAGCCAATTTATAAACCTTTTCAGACCATTTTGGTCCATTTTGTACCATTTTCCGACCAATTTAGAGCATTTTCGACTACTTTAGATAATTTTCAGCTAATTTCAGCCAATTTCTACACCATTTTGGACTAGTTCAACTTTTAGAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32625</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>21936</contig_pos>
        <strand></strand>
        <context>yggcccgatt[C/T]taggacagtt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGCCATTTTGAATCATTTTCAGACAATTTCAGGTTATTTTGGCCCGATT</left_flank>
        <right_flank>TAGGACAGTTTTGGCTGTTTTGGACTATTTTTCAGGCCATTGTTAGGCTA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAGAGACCATTTGCAGCTATATTTGGACCATTTTTGGGTCATTTTAGGTCATATTTTTCAGCCGATTTCAGACCCTTTTGGACCATATCAACGTATTATTGGACTATTTTTAGGCTATTTAGGACCATTTCTAGACCATGTTAGACTATTTTTAGGCTATTTCAGGTCATTTTTAGGTCATTTTGGGCTACTTTTAGGTCATGTTTAGGCTAGTTTAGGTCATTTTGGACTATTTTTGGACTATTTGGGACCCCTTTGGGCCATTTTAAAGCCATATTGGACTATTTGTAAGCCATTTCGGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATTTTCAGCCGATTTACAGCTCTTTTGGACCATTTTAAGGTTATATTGGACTATTTTAGACTTTTTTTTTGACAATTTTTAAGCCATTTTGAATCATTTTCAGACAATTTCAGGTTATTTTGGCCCGATTCTAGGACAGTTTTGGCTGTTTTGGACTATTTTTCAGGCCATTGTTAGGCTATTTTCAGCCAATTTATAAACCTTTTCAGACCATTTTGGTCCATTTTGTACCATTTTCCGACCAATTTAGAGCATTTTCGACTACTTTAGATAATTTTCAGCTAATTTCAGCCAATTTCTACACCATTTTGGACTAGTTCAACTTTTAGAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGAGCAACGTGGCGAGCACATCATGCGGTCCAATCGCCTTCGCAATGAAGCCAAACGTAT</canonical>
            <polymorphic>TCCAGAGACCATTTGCAGCTATATTTGGACCATTTTTGGGTCATTTTAGGTCATATTTTTCAGCCGATTTCAGACCCTTTTGGACCATATCAACGTATTATTGGACTATTTTTAGGCTATTTAGGACCATTTCTAGACCATGTTAGACTATTTTTAGGCTATTTCAGGTCATTTTTAGGTCATTTTGGGCTACTTTTAGGTCATGTTTAGGCTAGTTTAGGTCATTTTGGACTATTTTTGGACTATTTGGGACCCCTTTGGGCCATTTTAAAGCCATATTGGACTATTTGTAAGCCATTTCGGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATTTTCAGCCGATTTACAGCTCTTTTGGACCATTTTAAGGTTATATTGGACTATTTTAGACTTTTTTTTTGACAATTTTTAAGCCATTTTGAATCATTTTCAGACAATTTCAGGTTATTTTGGCCCGATTYTAGGACAGTTTTGGCTGTTTTGGACTATTTTTCAGGCCATTGTTAGGCTATTTTCAGCCAATTTATAAACCTTTTCAGACCATTTTGGTCCATTTTGTACCATTTTCCGACCAATTTAGAGCATTTTCGACTACTTTAGATAATTTTCAGCTAATTTCAGCCAATTTCTACACCATTTTGGACTAGTTCAACTTTTAGAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGAGCAACGTGGCGAGCACATCATGCGGTCCAATCGCCTTCGCAATGAAGCCAAACGTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>288 214 183 133 103 79</canonical_bands>
                <polymorphic_bands>471 214 133 103 79</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>504 460 36</canonical_bands>
                <polymorphic_bands>540 460</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>504 460 36</canonical_bands>
                <polymorphic_bands>540 460</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAGACCATTTGCAGCTAT</pcr_primer_p1>
		<pcr_primer_p2>TCAATAATTTGAAGGTAGAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>941</pcr_amplicon_size>
		<canonical_amplicon>CAGAGACCATTTGCAGCTATATTTGGACCATTTTTGGGTCATTTTAGGTCATATTTTTCAGCCGATTTCAGACCCTTTTGGACCATATCAACGTATTATTGGACTATTTTTAGGCTATTTAGGACCATTTCTAGACCATGTTAGACTATTTTTAGGCTATTTCAGGTCATTTTTAGGTCATTTTGGGCTACTTTTAGGTCATGTTTAGGCTAGTTTAGGTCATTTTGGACTATTTTTGGACTATTTGGGACCCCTTTGGGCCATTTTAAAGCCATATTGGACTATTTGTAAGCCATTTCGGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATTTTCAGCCGATTTACAGCTCTTTTGGACCATTTTAAGGTTATATTGGACTATTTTAGACTTTTTTTTTGACAATTTTTAAGCCATTTTGAATCATTTTCAGACAATTTCAGGTTATTTTGGCCCGATTCTAGGACAGTTTTGGCTGTTTTGGACTATTTTTCAGGCCATTGTTAGGCTATTTTCAGCCAATTTATAAACCTTTTCAGACCATTTTGGTCCATTTTGTACCATTTTCCGACCAATTTAGAGCATTTTCGACTACTTTAGATAATTTTCAGCTAATTTCAGCCAATTTCTACACCATTTTGGACTAGTTCAACTTTTAGAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGA</canonical_amplicon>
		<polymorphic_amplicon>CAGAGACCATTTGCAGCTATATTTGGACCATTTTTGGGTCATTTTAGGTCATATTTTTCAGCCGATTTCAGACCCTTTTGGACCATATCAACGTATTATTGGACTATTTTTAGGCTATTTAGGACCATTTCTAGACCATGTTAGACTATTTTTAGGCTATTTCAGGTCATTTTTAGGTCATTTTGGGCTACTTTTAGGTCATGTTTAGGCTAGTTTAGGTCATTTTGGACTATTTTTGGACTATTTGGGACCCCTTTGGGCCATTTTAAAGCCATATTGGACTATTTGTAAGCCATTTCGGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATTTTCAGCCGATTTACAGCTCTTTTGGACCATTTTAAGGTTATATTGGACTATTTTAGACTTTTTTTTTGACAATTTTTAAGCCATTTTGAATCATTTTCAGACAATTTCAGGTTATTTTGGCCCGATTYTAGGACAGTTTTGGCTGTTTTGGACTATTTTTCAGGCCATTGTTAGGCTATTTTCAGCCAATTTATAAACCTTTTCAGACCATTTTGGTCCATTTTGTACCATTTTCCGACCAATTTAGAGCATTTTCGACTACTTTAGATAATTTTCAGCTAATTTCAGCCAATTTCTACACCATTTTGGACTAGTTCAACTTTTAGAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32626</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>21982</contig_pos>
        <strand></strand>
        <context>gccattgtta[G/A]gctattttca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GATTCTAGGACAGTTTTGGCTGTTTTGGACTATTTTTCAGGCCATTGTTA</left_flank>
        <right_flank>GCTATTTTCAGCCAATTTATAAACCTTTTCAGACCATTTTGGTCCATTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGGTCATATTTTTCAGCCGATTTCAGACCCTTTTGGACCATATCAACGTATTATTGGACTATTTTTAGGCTATTTAGGACCATTTCTAGACCATGTTAGACTATTTTTAGGCTATTTCAGGTCATTTTTAGGTCATTTTGGGCTACTTTTAGGTCATGTTTAGGCTAGTTTAGGTCATTTTGGACTATTTTTGGACTATTTGGGACCCCTTTGGGCCATTTTAAAGCCATATTGGACTATTTGTAAGCCATTTCGGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATTTTCAGCCGATTTACAGCTCTTTTGGACCATTTTAAGGTTATATTGGACTATTTTAGACTTTTTTTTTGACAATTTTTAAGCCATTTTGAATCATTTTCAGACAATTTCAGGTTATTTTGGCCCGATTCTAGGACAGTTTTGGCTGTTTTGGACTATTTTTCAGGCCATTGTTAGGCTATTTTCAGCCAATTTATAAACCTTTTCAGACCATTTTGGTCCATTTTGTACCATTTTCCGACCAATTTAGAGCATTTTCGACTACTTTAGATAATTTTCAGCTAATTTCAGCCAATTTCTACACCATTTTGGACTAGTTCAACTTTTAGAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGAGCAACGTGGCGAGCACATCATGCGGTCCAATCGCCTTCGCAATGAAGCCAAACGTATTGATGGCAGCTCTTCTGATGGACTTCTTGTGAGCCTTGAGCAGCTC</canonical>
            <polymorphic>TAGGTCATATTTTTCAGCCGATTTCAGACCCTTTTGGACCATATCAACGTATTATTGGACTATTTTTAGGCTATTTAGGACCATTTCTAGACCATGTTAGACTATTTTTAGGCTATTTCAGGTCATTTTTAGGTCATTTTGGGCTACTTTTAGGTCATGTTTAGGCTAGTTTAGGTCATTTTGGACTATTTTTGGACTATTTGGGACCCCTTTGGGCCATTTTAAAGCCATATTGGACTATTTGTAAGCCATTTCGGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATTTTCAGCCGATTTACAGCTCTTTTGGACCATTTTAAGGTTATATTGGACTATTTTAGACTTTTTTTTTGACAATTTTTAAGCCATTTTGAATCATTTTCAGACAATTTCAGGTTATTTTGGCCCGATTCTAGGACAGTTTTGGCTGTTTTGGACTATTTTTCAGGCCATTGTTARGCTATTTTCAGCCAATTTATAAACCTTTTCAGACCATTTTGGTCCATTTTGTACCATTTTCCGACCAATTTAGAGCATTTTCGACTACTTTAGATAATTTTCAGCTAATTTCAGCCAATTTCTACACCATTTTGGACTAGTTCAACTTTTAGAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGAGCAACGTGGCGAGCACATCATGCGGTCCAATCGCCTTCGCAATGAAGCCAAACGTATTGATGGCAGCTCTTCTGATGGACTTCTTGTGAGCCTTGAGCAGCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>359 208 165 95 53 46 43 31</canonical_bands>
                <polymorphic_bands>359 251 165 95 53 46 31</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>105 93 64 57 53 53 51 42 42 40 31 31 30 24 22 22 22 21 21 20 19 17 12 11 11 11 11 11 10 10 10 10 10 3</canonical_bands>
                <polymorphic_bands>105 93 64 57 53 53 51 42 42 40 31 31 30 24 22 22 22 21 21 21 20 19 17 12 11 11 11 11 10 10 10 10 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAGACCATTTGCAGCTAT</pcr_primer_p1>
		<pcr_primer_p2>TCAATAATTTGAAGGTAGAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>941</pcr_amplicon_size>
		<canonical_amplicon>AGGCTATTTTCAGCCAATTTATAAACCTTTTCAGACCATTTTGGTCCATTTTGTACCATTTTCCGACCAATTTAGAGCATTTTCGACTACTTTAGATAATTTTCAGCTAATTTCAGCCAATTTCTACACCATTTTGGACTAGTTCAACTTTTAGAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGA</canonical_amplicon>
		<polymorphic_amplicon>ARGCTATTTTCAGCCAATTTATAAACCTTTTCAGACCATTTTGGTCCATTTTGTACCATTTTCCGACCAATTTAGAGCATTTTCGACTACTTTAGATAATTTTCAGCTAATTTCAGCCAATTTCTACACCATTTTGGACTAGTTCAACTTTTAGAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32627</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>22132</contig_pos>
        <strand></strand>
        <context>GTTCAACTTT[T/A]AGaatgatct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTCAGCTAATTTCAGCCAATTTCTACACCATTTTGGACTAGTTCAACTTT</left_flank>
        <right_flank>AGAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGTCATGTTTAGGCTAGTTTAGGTCATTTTGGACTATTTTTGGACTATTTGGGACCCCTTTGGGCCATTTTAAAGCCATATTGGACTATTTGTAAGCCATTTCGGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATTTTCAGCCGATTTACAGCTCTTTTGGACCATTTTAAGGTTATATTGGACTATTTTAGACTTTTTTTTTGACAATTTTTAAGCCATTTTGAATCATTTTCAGACAATTTCAGGTTATTTTGGCCCGATTCTAGGACAGTTTTGGCTGTTTTGGACTATTTTTCAGGCCATTGTTAGGCTATTTTCAGCCAATTTATAAACCTTTTCAGACCATTTTGGTCCATTTTGTACCATTTTCCGACCAATTTAGAGCATTTTCGACTACTTTAGATAATTTTCAGCTAATTTCAGCCAATTTCTACACCATTTTGGACTAGTTCAACTTTTAGAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGAGCAACGTGGCGAGCACATCATGCGGTCCAATCGCCTTCGCAATGAAGCCAAACGTATTGATGGCAGCTCTTCTGATGGACTTCTTGTGAGCCTTGAGCAGCTCCAACAACTCGAAACAGATTCTCATCCATTCTCTGGCCGACACGAATTCCGATCCTCTGTCAGCGATGGCTCCAACCAGATCGATACAATTCTCCTGCACTTTCTCATGCCGATTCTTGAGGATCGGAGTGAGTCTAGGGAGCAGATCCTT</canonical>
            <polymorphic>TAGGTCATGTTTAGGCTAGTTTAGGTCATTTTGGACTATTTTTGGACTATTTGGGACCCCTTTGGGCCATTTTAAAGCCATATTGGACTATTTGTAAGCCATTTCGGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATTTTCAGCCGATTTACAGCTCTTTTGGACCATTTTAAGGTTATATTGGACTATTTTAGACTTTTTTTTTGACAATTTTTAAGCCATTTTGAATCATTTTCAGACAATTTCAGGTTATTTTGGCCCGATTCTAGGACAGTTTTGGCTGTTTTGGACTATTTTTCAGGCCATTGTTAGGCTATTTTCAGCCAATTTATAAACCTTTTCAGACCATTTTGGTCCATTTTGTACCATTTTCCGACCAATTTAGAGCATTTTCGACTACTTTAGATAATTTTCAGCTAATTTCAGCCAATTTCTACACCATTTTGGACTAGTTCAACTTTWAGAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGAGCAACGTGGCGAGCACATCATGCGGTCCAATCGCCTTCGCAATGAAGCCAAACGTATTGATGGCAGCTCTTCTGATGGACTTCTTGTGAGCCTTGAGCAGCTCCAACAACTCGAAACAGATTCTCATCCATTCTCTGGCCGACACGAATTCCGATCCTCTGTCAGCGATGGCTCCAACCAGATCGATACAATTCTCCTGCACTTTCTCATGCCGATTCTTGAGGATCGGAGTGAGTCTAGGGAGCAGATCCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAGACCATTTGCAGCTAT</pcr_primer_p1>
		<pcr_primer_p2>TCAATAATTTGAAGGTAGAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>941</pcr_amplicon_size>
		<canonical_amplicon>TTAGAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGA</canonical_amplicon>
		<polymorphic_amplicon>TWAGAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32628</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>22145</contig_pos>
        <strand></strand>
        <context>aatgatctaa[A/T]atagccgaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGCCAATTTCTACACCATTTTGGACTAGTTCAACTTTTAGAATGATCTAA</left_flank>
        <right_flank>ATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTAGTTTAGGTCATTTTGGACTATTTTTGGACTATTTGGGACCCCTTTGGGCCATTTTAAAGCCATATTGGACTATTTGTAAGCCATTTCGGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATTTTCAGCCGATTTACAGCTCTTTTGGACCATTTTAAGGTTATATTGGACTATTTTAGACTTTTTTTTTGACAATTTTTAAGCCATTTTGAATCATTTTCAGACAATTTCAGGTTATTTTGGCCCGATTCTAGGACAGTTTTGGCTGTTTTGGACTATTTTTCAGGCCATTGTTAGGCTATTTTCAGCCAATTTATAAACCTTTTCAGACCATTTTGGTCCATTTTGTACCATTTTCCGACCAATTTAGAGCATTTTCGACTACTTTAGATAATTTTCAGCTAATTTCAGCCAATTTCTACACCATTTTGGACTAGTTCAACTTTTAGAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGAGCAACGTGGCGAGCACATCATGCGGTCCAATCGCCTTCGCAATGAAGCCAAACGTATTGATGGCAGCTCTTCTGATGGACTTCTTGTGAGCCTTGAGCAGCTCCAACAACTCGAAACAGATTCTCATCCATTCTCTGGCCGACACGAATTCCGATCCTCTGTCAGCGATGGCTCCAACCAGATCGATACAATTCTCCTGCACTTTCTCATGCCGATTCTTGAGGATCGGAGTGAGTCTAGGGAGCAGATCCTTGATTGGTGGTGTC</canonical>
            <polymorphic>GGCTAGTTTAGGTCATTTTGGACTATTTTTGGACTATTTGGGACCCCTTTGGGCCATTTTAAAGCCATATTGGACTATTTGTAAGCCATTTCGGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATTTTCAGCCGATTTACAGCTCTTTTGGACCATTTTAAGGTTATATTGGACTATTTTAGACTTTTTTTTTGACAATTTTTAAGCCATTTTGAATCATTTTCAGACAATTTCAGGTTATTTTGGCCCGATTCTAGGACAGTTTTGGCTGTTTTGGACTATTTTTCAGGCCATTGTTAGGCTATTTTCAGCCAATTTATAAACCTTTTCAGACCATTTTGGTCCATTTTGTACCATTTTCCGACCAATTTAGAGCATTTTCGACTACTTTAGATAATTTTCAGCTAATTTCAGCCAATTTCTACACCATTTTGGACTAGTTCAACTTTTAGAATGATCTAAWATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGAGCAACGTGGCGAGCACATCATGCGGTCCAATCGCCTTCGCAATGAAGCCAAACGTATTGATGGCAGCTCTTCTGATGGACTTCTTGTGAGCCTTGAGCAGCTCCAACAACTCGAAACAGATTCTCATCCATTCTCTGGCCGACACGAATTCCGATCCTCTGTCAGCGATGGCTCCAACCAGATCGATACAATTCTCCTGCACTTTCTCATGCCGATTCTTGAGGATCGGAGTGAGTCTAGGGAGCAGATCCTTGATTGGTGGTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAGACCATTTGCAGCTAT</pcr_primer_p1>
		<pcr_primer_p2>TCAATAATTTGAAGGTAGAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>941</pcr_amplicon_size>
		<canonical_amplicon>AAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGA</canonical_amplicon>
		<polymorphic_amplicon>AWATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32629</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>22184</contig_pos>
        <strand></strand>
        <context>aaaatagcct[G/A]aaaccggtmt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCT</left_flank>
        <right_flank>AAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGACCCCTTTGGGCCATTTTAAAGCCATATTGGACTATTTGTAAGCCATTTCGGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATTTTCAGCCGATTTACAGCTCTTTTGGACCATTTTAAGGTTATATTGGACTATTTTAGACTTTTTTTTTGACAATTTTTAAGCCATTTTGAATCATTTTCAGACAATTTCAGGTTATTTTGGCCCGATTCTAGGACAGTTTTGGCTGTTTTGGACTATTTTTCAGGCCATTGTTAGGCTATTTTCAGCCAATTTATAAACCTTTTCAGACCATTTTGGTCCATTTTGTACCATTTTCCGACCAATTTAGAGCATTTTCGACTACTTTAGATAATTTTCAGCTAATTTCAGCCAATTTCTACACCATTTTGGACTAGTTCAACTTTTAGAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGAGCAACGTGGCGAGCACATCATGCGGTCCAATCGCCTTCGCAATGAAGCCAAACGTATTGATGGCAGCTCTTCTGATGGACTTCTTGTGAGCCTTGAGCAGCTCCAACAACTCGAAACAGATTCTCATCCATTCTCTGGCCGACACGAATTCCGATCCTCTGTCAGCGATGGCTCCAACCAGATCGATACAATTCTCCTGCACTTTCTCATGCCGATTCTTGAGGATCGGAGTGAGTCTAGGGAGCAGATCCTTGATTGGTGGTGTCATTTTAGTCATTCCAATCACGTTGCAAATGGCTTTCAGG</canonical>
            <polymorphic>GGGACCCCTTTGGGCCATTTTAAAGCCATATTGGACTATTTGTAAGCCATTTCGGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATTTTCAGCCGATTTACAGCTCTTTTGGACCATTTTAAGGTTATATTGGACTATTTTAGACTTTTTTTTTGACAATTTTTAAGCCATTTTGAATCATTTTCAGACAATTTCAGGTTATTTTGGCCCGATTCTAGGACAGTTTTGGCTGTTTTGGACTATTTTTCAGGCCATTGTTAGGCTATTTTCAGCCAATTTATAAACCTTTTCAGACCATTTTGGTCCATTTTGTACCATTTTCCGACCAATTTAGAGCATTTTCGACTACTTTAGATAATTTTCAGCTAATTTCAGCCAATTTCTACACCATTTTGGACTAGTTCAACTTTTAGAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTRAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGAGCAACGTGGCGAGCACATCATGCGGTCCAATCGCCTTCGCAATGAAGCCAAACGTATTGATGGCAGCTCTTCTGATGGACTTCTTGTGAGCCTTGAGCAGCTCCAACAACTCGAAACAGATTCTCATCCATTCTCTGGCCGACACGAATTCCGATCCTCTGTCAGCGATGGCTCCAACCAGATCGATACAATTCTCCTGCACTTTCTCATGCCGATTCTTGAGGATCGGAGTGAGTCTAGGGAGCAGATCCTTGATTGGTGGTGTCATTTTAGTCATTCCAATCACGTTGCAAATGGCTTTCAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAGACCATTTGCAGCTAT</pcr_primer_p1>
		<pcr_primer_p2>TCAATAATTTGAAGGTAGAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>941</pcr_amplicon_size>
		<canonical_amplicon>TGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGA</canonical_amplicon>
		<polymorphic_amplicon>TRAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32630</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>22193</contig_pos>
        <strand></strand>
        <context>traaaccggt[C/A]tgaaaacgat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGT</left_flank>
        <right_flank>TGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGGCCATTTTAAAGCCATATTGGACTATTTGTAAGCCATTTCGGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATTTTCAGCCGATTTACAGCTCTTTTGGACCATTTTAAGGTTATATTGGACTATTTTAGACTTTTTTTTTGACAATTTTTAAGCCATTTTGAATCATTTTCAGACAATTTCAGGTTATTTTGGCCCGATTCTAGGACAGTTTTGGCTGTTTTGGACTATTTTTCAGGCCATTGTTAGGCTATTTTCAGCCAATTTATAAACCTTTTCAGACCATTTTGGTCCATTTTGTACCATTTTCCGACCAATTTAGAGCATTTTCGACTACTTTAGATAATTTTCAGCTAATTTCAGCCAATTTCTACACCATTTTGGACTAGTTCAACTTTTAGAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGAGCAACGTGGCGAGCACATCATGCGGTCCAATCGCCTTCGCAATGAAGCCAAACGTATTGATGGCAGCTCTTCTGATGGACTTCTTGTGAGCCTTGAGCAGCTCCAACAACTCGAAACAGATTCTCATCCATTCTCTGGCCGACACGAATTCCGATCCTCTGTCAGCGATGGCTCCAACCAGATCGATACAATTCTCCTGCACTTTCTCATGCCGATTCTTGAGGATCGGAGTGAGTCTAGGGAGCAGATCCTTGATTGGTGGTGTCATTTTAGTCATTCCAATCACGTTGCAAATGGCTTTCAGGGCTCCGAGA</canonical>
            <polymorphic>TTGGGCCATTTTAAAGCCATATTGGACTATTTGTAAGCCATTTCGGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATTTTCAGCCGATTTACAGCTCTTTTGGACCATTTTAAGGTTATATTGGACTATTTTAGACTTTTTTTTTGACAATTTTTAAGCCATTTTGAATCATTTTCAGACAATTTCAGGTTATTTTGGCCCGATTCTAGGACAGTTTTGGCTGTTTTGGACTATTTTTCAGGCCATTGTTAGGCTATTTTCAGCCAATTTATAAACCTTTTCAGACCATTTTGGTCCATTTTGTACCATTTTCCGACCAATTTAGAGCATTTTCGACTACTTTAGATAATTTTCAGCTAATTTCAGCCAATTTCTACACCATTTTGGACTAGTTCAACTTTTAGAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTMTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGAGCAACGTGGCGAGCACATCATGCGGTCCAATCGCCTTCGCAATGAAGCCAAACGTATTGATGGCAGCTCTTCTGATGGACTTCTTGTGAGCCTTGAGCAGCTCCAACAACTCGAAACAGATTCTCATCCATTCTCTGGCCGACACGAATTCCGATCCTCTGTCAGCGATGGCTCCAACCAGATCGATACAATTCTCCTGCACTTTCTCATGCCGATTCTTGAGGATCGGAGTGAGTCTAGGGAGCAGATCCTTGATTGGTGGTGTCATTTTAGTCATTCCAATCACGTTGCAAATGGCTTTCAGGGCTCCGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>258 169 150 106 82 79 76 45 31 4</canonical_bands>
                <polymorphic_bands>408 169 106 82 79 76 45 31 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAGACCATTTGCAGCTAT</pcr_primer_p1>
		<pcr_primer_p2>TCAATAATTTGAAGGTAGAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>941</pcr_amplicon_size>
		<canonical_amplicon>TCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGA</canonical_amplicon>
		<polymorphic_amplicon>TMTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32631</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>22237</contig_pos>
        <strand></strand>
        <context>ccattttccg[G/A]ccgtttgsac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCG</left_flank>
        <right_flank>CCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATTTTCAGCCGATTTACAGCTCTTTTGGACCATTTTAAGGTTATATTGGACTATTTTAGACTTTTTTTTTGACAATTTTTAAGCCATTTTGAATCATTTTCAGACAATTTCAGGTTATTTTGGCCCGATTCTAGGACAGTTTTGGCTGTTTTGGACTATTTTTCAGGCCATTGTTAGGCTATTTTCAGCCAATTTATAAACCTTTTCAGACCATTTTGGTCCATTTTGTACCATTTTCCGACCAATTTAGAGCATTTTCGACTACTTTAGATAATTTTCAGCTAATTTCAGCCAATTTCTACACCATTTTGGACTAGTTCAACTTTTAGAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGAGCAACGTGGCGAGCACATCATGCGGTCCAATCGCCTTCGCAATGAAGCCAAACGTATTGATGGCAGCTCTTCTGATGGACTTCTTGTGAGCCTTGAGCAGCTCCAACAACTCGAAACAGATTCTCATCCATTCTCTGGCCGACACGAATTCCGATCCTCTGTCAGCGATGGCTCCAACCAGATCGATACAATTCTCCTGCACTTTCTCATGCCGATTCTTGAGGATCGGAGTGAGTCTAGGGAGCAGATCCTTGATTGGTGGTGTCATTTTAGTCATTCCAATCACGTTGCAAATGGCTTTCAGGGCTCCGAGAATCGAGCCGAGCACTTCTGGATACTCTTCTCCCAGATATTCGTA</canonical>
            <polymorphic>GGACAATTTTAGACCATTTTCAGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATTTTCAGCCGATTTACAGCTCTTTTGGACCATTTTAAGGTTATATTGGACTATTTTAGACTTTTTTTTTGACAATTTTTAAGCCATTTTGAATCATTTTCAGACAATTTCAGGTTATTTTGGCCCGATTCTAGGACAGTTTTGGCTGTTTTGGACTATTTTTCAGGCCATTGTTAGGCTATTTTCAGCCAATTTATAAACCTTTTCAGACCATTTTGGTCCATTTTGTACCATTTTCCGACCAATTTAGAGCATTTTCGACTACTTTAGATAATTTTCAGCTAATTTCAGCCAATTTCTACACCATTTTGGACTAGTTCAACTTTTAGAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGRCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGAGCAACGTGGCGAGCACATCATGCGGTCCAATCGCCTTCGCAATGAAGCCAAACGTATTGATGGCAGCTCTTCTGATGGACTTCTTGTGAGCCTTGAGCAGCTCCAACAACTCGAAACAGATTCTCATCCATTCTCTGGCCGACACGAATTCCGATCCTCTGTCAGCGATGGCTCCAACCAGATCGATACAATTCTCCTGCACTTTCTCATGCCGATTCTTGAGGATCGGAGTGAGTCTAGGGAGCAGATCCTTGATTGGTGGTGTCATTTTAGTCATTCCAATCACGTTGCAAATGGCTTTCAGGGCTCCGAGAATCGAGCCGAGCACTTCTGGATACTCTTCTCCCAGATATTCGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>224 208 196 104 95 53 46 43 31</canonical_bands>
                <polymorphic_bands>224 208 196 104 95 77 53 43</polymorphic_bands>
            </assay>
            <assay>
                <site>CGGCCG</site>
                <isoschizomers>
                    <enzyme>BseX3I</enzyme>
                    <enzyme>BstZI</enzyme>
                    <enzyme>EagI</enzyme>
                    <enzyme>EclXI</enzyme>
                    <enzyme>Eco52I</enzyme>
                    <enzyme>XmaIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>265 220 208 157 44 41 34 31</canonical_bands>
                <polymorphic_bands>296 220 208 157 44 41 34</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 451 46</canonical_bands>
                <polymorphic_bands>549 451</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>498 280 222</canonical_bands>
                <polymorphic_bands>778 222</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>126 105 93 64 57 53 42 40 38 38 33 31 24 23 22 22 21 20 19 14 12 11 11 11 11 10 10 10 10 10 9</canonical_bands>
                <polymorphic_bands>126 105 93 77 64 53 42 40 38 38 33 31 24 23 22 22 21 19 14 12 11 11 11 11 10 10 10 10 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAGACCATTTGCAGCTAT</pcr_primer_p1>
		<pcr_primer_p2>TCAATAATTTGAAGGTAGAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>941</pcr_amplicon_size>
		<canonical_amplicon>GGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGA</canonical_amplicon>
		<polymorphic_amplicon>GRCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32632</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>22245</contig_pos>
        <strand></strand>
        <context>cgrccgtttg[G/C]actatttcaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTG</left_flank>
        <right_flank>ACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGACCATTTTCAGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATTTTCAGCCGATTTACAGCTCTTTTGGACCATTTTAAGGTTATATTGGACTATTTTAGACTTTTTTTTTGACAATTTTTAAGCCATTTTGAATCATTTTCAGACAATTTCAGGTTATTTTGGCCCGATTCTAGGACAGTTTTGGCTGTTTTGGACTATTTTTCAGGCCATTGTTAGGCTATTTTCAGCCAATTTATAAACCTTTTCAGACCATTTTGGTCCATTTTGTACCATTTTCCGACCAATTTAGAGCATTTTCGACTACTTTAGATAATTTTCAGCTAATTTCAGCCAATTTCTACACCATTTTGGACTAGTTCAACTTTTAGAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGAGCAACGTGGCGAGCACATCATGCGGTCCAATCGCCTTCGCAATGAAGCCAAACGTATTGATGGCAGCTCTTCTGATGGACTTCTTGTGAGCCTTGAGCAGCTCCAACAACTCGAAACAGATTCTCATCCATTCTCTGGCCGACACGAATTCCGATCCTCTGTCAGCGATGGCTCCAACCAGATCGATACAATTCTCCTGCACTTTCTCATGCCGATTCTTGAGGATCGGAGTGAGTCTAGGGAGCAGATCCTTGATTGGTGGTGTCATTTTAGTCATTCCAATCACGTTGCAAATGGCTTTCAGGGCTCCGAGAATCGAGCCGAGCACTTCTGGATACTCTTCTCCCAGATATTCGTAGAGAACGA</canonical>
            <polymorphic>TTAGACCATTTTCAGCTAATTTCAGGCCATTTTAGGACAGTTTTGGCGATTTTTTTGACTATTTTCAGCCGATTTACAGCTCTTTTGGACCATTTTAAGGTTATATTGGACTATTTTAGACTTTTTTTTTGACAATTTTTAAGCCATTTTGAATCATTTTCAGACAATTTCAGGTTATTTTGGCCCGATTCTAGGACAGTTTTGGCTGTTTTGGACTATTTTTCAGGCCATTGTTAGGCTATTTTCAGCCAATTTATAAACCTTTTCAGACCATTTTGGTCCATTTTGTACCATTTTCCGACCAATTTAGAGCATTTTCGACTACTTTAGATAATTTTCAGCTAATTTCAGCCAATTTCTACACCATTTTGGACTAGTTCAACTTTTAGAATGATCTAAAATAGCCGAAAATGACATAAAAATGGACGAAAATAGCCTGAAACCGGTCTGAAAACGATCTAAAAGTAGTATTTCGTCTAGACCATTTTCCGGCCGTTTGSACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGAGCAACGTGGCGAGCACATCATGCGGTCCAATCGCCTTCGCAATGAAGCCAAACGTATTGATGGCAGCTCTTCTGATGGACTTCTTGTGAGCCTTGAGCAGCTCCAACAACTCGAAACAGATTCTCATCCATTCTCTGGCCGACACGAATTCCGATCCTCTGTCAGCGATGGCTCCAACCAGATCGATACAATTCTCCTGCACTTTCTCATGCCGATTCTTGAGGATCGGAGTGAGTCTAGGGAGCAGATCCTTGATTGGTGGTGTCATTTTAGTCATTCCAATCACGTTGCAAATGGCTTTCAGGGCTCCGAGAATCGAGCCGAGCACTTCTGGATACTCTTCTCCCAGATATTCGTAGAGAACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAGACCATTTGCAGCTAT</pcr_primer_p1>
		<pcr_primer_p2>TCAATAATTTGAAGGTAGAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>941</pcr_amplicon_size>
		<canonical_amplicon>GGACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGA</canonical_amplicon>
		<polymorphic_amplicon>GSACTATTTCAAAGCCGTTTTTAGGCCTATTTGGACCAATTTAAAGCTATTTTGGGCTATTTTAGGCCCATTTTCAGGCTATTTTAGACGCGTTTTTGCCTATTTCAAGACCCCTCTTCTACCTTCAAATTATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32634</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>25402</contig_pos>
        <strand></strand>
        <context>CGGCGAGCGC[C/T]GCCAAGCAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAGAGTCGAAGGCTTCGATTCCGTATGGAGCGGATGCTTCGGCGAGCGC</left_flank>
        <right_flank>GCCAAGCAGAGAGCAGTGATTGTACGGACCTGGAATATCATTTTTAGGCG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAATTCGGTGCTTTTAGATGTTTCTAGGCTATTTTAGGTCAATTTTCAGCTATTTCAGGCGGCTTTAGGCTATTTTAGGCCCCTAATAGGCCATTTTTAGGTCAATTCTGGGTAATTCAAGTCGATTTTCAGCTATTTTTAGGCTATTTTAGGCCAATTTTGACGGTTTAAAAACCGATTTTTTCAAAGTAAGTTCTATACCTCATCGCGAATATAACTCGGCTCGACACCATCTGTCGCGCAGCACTGTTTCACCACTTTCAGCACGATTTTCTTCATTTCCTCATCGGGCGACGCGAATTCTCGAATCAAAATCAACATGACTTCACGGGTATAGTAGGAGGCGTACTCGGCGTCCATCAACGGAATCAGGTAGCCAATGGCCTTGAGAAACGCGGCGAGACCCTTTCCACGATGCATTCGGATTCCTTTCCACAGAGGTTTGAGCACAGAGTCGAAGGCTTCGATTCCGTATGGAGCGGATGCTTCGGCGAGCGCCGCCAAGCAGAGAGCAGTGATTGTACGGACCTGGAATATCATTTTTAGGCGATTTTAGACCGATTTCCTAGCTTTTTCGGCTCGATTTCAGGCTAATTCGCGTTTAAAAACCTTTAGAATCATCTCTAAAACCCCTAAAAACCTATAAAACTTCAAAAAATTGACGAAAATCGCAACTTTTCAAAAATGTGCTCAGGTGGCCTAGTGGGATTTTGGACAAATTTTCGGAAAATCAACACCAGGGTTCGATTCCACCGGCTAGCAAACTTTTTTTGCTTTCATTTTTAGCTAGAATATAGGGGTTCTAGATGGTTCCATGCTATTTTAGACCATTTTTAGGCTGTTTTAGGCCCTTTTAGGCTGATTTTTCAGGCCGATTCTAGGCCAATTGGAGTTGAGGCTATTTTAGGCCGACTTTAATCCATTTTTGACTAATTTTGGGGGCATTTTCCAAGCAAAATTCAAGGCATTTCAGGCCACTCTAGACCATTCTAGGCCGTT</canonical>
            <polymorphic>AGAATTCGGTGCTTTTAGATGTTTCTAGGCTATTTTAGGTCAATTTTCAGCTATTTCAGGCGGCTTTAGGCTATTTTAGGCCCCTAATAGGCCATTTTTAGGTCAATTCTGGGTAATTCAAGTCGATTTTCAGCTATTTTTAGGCTATTTTAGGCCAATTTTGACGGTTTAAAAACCGATTTTTTCAAAGTAAGTTCTATACCTCATCGCGAATATAACTCGGCTCGACACCATCTGTCGCGCAGCACTGTTTCACCACTTTCAGCACGATTTTCTTCATTTCCTCATCGGGCGACGCGAATTCTCGAATCAAAATCAACATGACTTCACGGGTATAGTAGGAGGCGTACTCGGCGTCCATCAACGGAATCAGGTAGCCAATGGCCTTGAGAAACGCGGCGAGACCCTTTCCACGATGCATTCGGATTCCTTTCCACAGAGGTTTGAGCACAGAGTCGAAGGCTTCGATTCCGTATGGAGCGGATGCTTCGGCGAGCGCYGCCAAGCAGAGAGCAGTGATTGTACGGACCTGGAATATCATTTTTAGGCGATTTTAGACCGATTTCCTAGCTTTTTCGGCTCGATTTCAGGCTAATTCGCGTTTAAAAACCTTTAGAATCATCTCTAAAACCCCTAAAAACCTATAAAACTTCAAAAAATTGACGAAAATCGCAACTTTTCAAAAATGTGCTCAGGTGGCCTAGTGGGATTTTGGACAAATTTTCGGAAAATCAACACCAGGGTTCGATTCCACCGGCTAGCAAACTTTTTTTGCTTTCATTTTTAGCTAGAATATAGGGGTTCTAGATGGTTCCATGCTATTTTAGACCATTTTTAGGCTGTTTTAGGCCCTTTTAGGCTGATTTTTCAGGCCGATTCTAGGCCAATTGGAGTTGAGGCTATTTTAGGCCGACTTTAATCCATTTTTGACTAATTTTGGGGGCATTTTCCAAGCAAAATTCAAGGCATTTCAGGCCACTCTAGACCATTCTAGGCCGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 440 59</canonical_bands>
                <polymorphic_bands>941 59</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>499 336 102 63</canonical_bands>
                <polymorphic_bands>601 336 63</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCAAAATCAACATGACTTCAC</pcr_primer_p1>
		<pcr_primer_p2>TCTAAAATCGCCTAAAAATGATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATCAAAATCAACATGACTTCACGGGTATAGTAGGAGGCGTACTCGGCGTCCATCAACGGAATCAGGTAGCCAATGGCCTTGAGAAACGCGGCGAGACCCTTTCCACGATGCATTCGGATTCCTTTCCACAGAGGTTTGAGCACAGAGTCGAAGGCTTCGATTCCGTATGGAGCGGATGCTTCGGCGAGCGCCGCCAAGCAGAGAGCAGTGATTGTACGGACCTGGAATATCATTTTTAGGCGATTTTAGA</canonical_amplicon>
		<polymorphic_amplicon>AATCAAAATCAACATGACTTCACGGGTATAGTAGGAGGCGTACTCGGCGTCCATCAACGGAATCAGGTAGCCAATGGCCTTGAGAAACGCGGCGAGACCCTTTCCACGATGCATTCGGATTCCTTTCCACAGAGGTTTGAGCACAGAGTCGAAGGCTTCGATTCCGTATGGAGCGGATGCTTCGGCGAGCGCYGCCAAGCAGAGAGCAGTGATTGTACGGACCTGGAATATCATTTTTAGGCGATTTTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32649</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>102758</contig_pos>
        <strand>+</strand>
        <context>CCACATGCTG[A/G]CAAAAAGGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGCCTTATGGCCACCGGAGTTTTAAAGTGTCCCACTGATCCACATGCTG</left_flank>
        <right_flank>CAAAAAGGTCCATATTGATCTTTGGGATGAGGATTGTGAGTTTCTGAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTGGATTTTAGGGTTTCTGGAAATTTTTGGAAACTTTCAGTTTTTGGAGTTTCAGAAGCGTCCTTCAATATCCTTTACATTTTTTCCGTTGATCTTTTTTTTCAAGTTCTGCAACCTGAATTTTTTTTTGTAAAAGACAATTTCCAATATAAAAATATTTTTAATTAGAGATTTCTGGTCCCTGTGCTCATTAACCACATAATTTCTCAAAAAGATGATGTACATAGTGTTATGTACAAATATTTGTGTGCATAGAACTGACACCAATGAGCAAATAGACCAGTGAACATGGCAAGATAAGATAAGAGGTCTCATGGGAAAAGACATTCTTCTTCTTTTTCTTACCACCACGCATTCTGTCCCCCTTAGAATTATGACGTCTTCTAGAAAAGTGCTCCATGCTCTTCTAATTCTCTCATTTTCCAATTTGGCGGCTTCCAAAACCAAGTGCCTTATGGCCACCGGAGTTTTAAAGTGTCCCACTGATCCACATGCTGTCAAAAAGGTCCATATTGATCTTTGGGATGAGGATTGTGAGTTTCTGAATTTTTTAAGTTCTCGAATTTTTGAGTTTTGAATTCTTGAATCTTTGAATTTTTGAATTTTTGAATTTTTGAATTTTTGAGTTTTCGAATTTTTGAATTTTCAAAATTTTAACCTCTAAATTTTTGCAAACTGCCTAGCTGCTTCCAGCCCTTCCCCTGGAATCCGATGACCTAATGGGTCGAACCTGGAGTGATATCCATGGGAATTTCCGAGTAACTGGATGTGCAAGTGATTTTGGTCCCATTAACACCCCCGACCCATATATTTATATCCAACACGATTGCCCACATCGAGACACAAATGCAACGGATCCGATTCAGGTGGGATTTTTAGGACCATGTATTTGAGCTCAATTATCTCGCTTCTTGTAAGAGATATCAGATTTTTGTCAACTGCTGAAATGTTTTTCTTTAAATTTTGCATATTTTATTAGTTGACAAAACTTTGATATC</canonical>
            <polymorphic>GTTTGGATTTTAGGGTTTCTGGAAATTTTTGGAAACTTTCAGTTTTTGGAGTTTCAGAAGCGTCCTTCAATATCCTTTACATTTTTTCCGTTGATCTTTTTTTTCAAGTTCTGCAACCTGAATTTTTTTTTGTAAAAGACAATTTCCAATATAAAAATATTTTTAATTAGAGATTTCTGGTCCCTGTGCTCATTAACCACATAATTTCTCAAAAAGATGATGTACATAGTGTTATGTACAAATATTTGTGTGCATAGAACTGACACCAATGAGCAAATAGACCAGTGAACATGGCAAGATAAGATAAGAGGTCTCATGGGAAAAGACATTCTTCTTCTTTTTCTTACCACCACGCATTCTGTCCCCCTTAGAATTATGACGTCTTCTAGAAAAGTGCTCCATGCTCTTCTAATTCTCTCATTTTCCAATTTGGCGGCTTCCAAAACCAAGTGCCTTATGGCCACCGGAGTTTTAAAGTGTCCCACTGATCCACATGCTGRCAAAAAGGTCCATATTGATCTTTGGGATGAGGATTGTGAGTTTCTGAATTTTTTAAGTTCTCGAATTTTTGAGTTTTGAATTCTTGAATCTTTGAATTTTTGAATTTTTGAATTTTTGAATTTTTGAGTTTTCGAATTTTTGAATTTTCAAAATTTTAACCTCTAAATTTTTGCAAACTGCCTAGCTGCTTCCAGCCCTTCCCCTGGAATCCGATGACCTAATGGGTCGAACCTGGAGTGATATCCATGGGAATTTCCGAGTAACTGGATGTGCAAGTGATTTTGGTCCCATTAACACCCCCGACCCATATATTTATATCCAACACGATTGCCCACATCGAGACACAAATGCAACGGATCCGATTCAGGTGGGATTTTTAGGACCATGTATTTGAGCTCAATTATCTCGCTTCTTGTAAGAGATATCAGATTTTTGTCAACTGCTGAAATGTTTTTCTTTAAATTTTGCATATTTTATTAGTTGACAAAACTTTGATATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCTTCTTCTTTTTCTTACCA</pcr_primer_p1>
		<pcr_primer_p2>CAAAACTCAAAAATTCGAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CATTCTTCTTCTTTTTCTTACCACCACGCATTCTGTCCCCCTTAGAATTATGACGTCTTCTAGAAAAGTGCTCCATGCTCTTCTAATTCTCTCATTTTCCAATTTGGCGGCTTCCAAAACCAAGTGCCTTATGGCCACCGGAGTTTTAAAGTGTCCCACTGATCCACATGCTGTCAAAAAGGTCCATATTGATCTTTGGGATGAGGATTGTGAGTTTCTGAATTTTTTAAGTTCTCGAATTTTTGAGTTTTG</canonical_amplicon>
		<polymorphic_amplicon>CATTCTTCTTCTTTTTCTTACCACCACGCATTCTGTCCCCCTTAGAATTATGACGTCTTCTAGAAAAGTGCTCCATGCTCTTCTAATTCTCTCATTTTCCAATTTGGCGGCTTCCAAAACCAAGTGCCTTATGGCCACCGGAGTTTTAAAGTGTCCCACTGATCCACATGCTGRCAAAAAGGTCCATATTGATCTTTGGGATGAGGATTGTGAGTTTCTGAATTTTTTAAGTTCTCGAATTTTTGAGTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32650</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>102812</contig_pos>
        <strand>+</strand>
        <context>CTGAATTTTT[G/T]AAGTTCTCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAGGTCCATATTGATCTTTGGGATGAGGATTGTGAGTTTCTGAATTTTT</left_flank>
        <right_flank>AAGTTCTCGAATTTTTGAGTTTTGAATTCTTGAATCTTTGAATTTTTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAAGCGTCCTTCAATATCCTTTACATTTTTTCCGTTGATCTTTTTTTTCAAGTTCTGCAACCTGAATTTTTTTTTGTAAAAGACAATTTCCAATATAAAAATATTTTTAATTAGAGATTTCTGGTCCCTGTGCTCATTAACCACATAATTTCTCAAAAAGATGATGTACATAGTGTTATGTACAAATATTTGTGTGCATAGAACTGACACCAATGAGCAAATAGACCAGTGAACATGGCAAGATAAGATAAGAGGTCTCATGGGAAAAGACATTCTTCTTCTTTTTCTTACCACCACGCATTCTGTCCCCCTTAGAATTATGACGTCTTCTAGAAAAGTGCTCCATGCTCTTCTAATTCTCTCATTTTCCAATTTGGCGGCTTCCAAAACCAAGTGCCTTATGGCCACCGGAGTTTTAAAGTGTCCCACTGATCCACATGCTGTCAAAAAGGTCCATATTGATCTTTGGGATGAGGATTGTGAGTTTCTGAATTTTTTAAGTTCTCGAATTTTTGAGTTTTGAATTCTTGAATCTTTGAATTTTTGAATTTTTGAATTTTTGAATTTTTGAGTTTTCGAATTTTTGAATTTTCAAAATTTTAACCTCTAAATTTTTGCAAACTGCCTAGCTGCTTCCAGCCCTTCCCCTGGAATCCGATGACCTAATGGGTCGAACCTGGAGTGATATCCATGGGAATTTCCGAGTAACTGGATGTGCAAGTGATTTTGGTCCCATTAACACCCCCGACCCATATATTTATATCCAACACGATTGCCCACATCGAGACACAAATGCAACGGATCCGATTCAGGTGGGATTTTTAGGACCATGTATTTGAGCTCAATTATCTCGCTTCTTGTAAGAGATATCAGATTTTTGTCAACTGCTGAAATGTTTTTCTTTAAATTTTGCATATTTTATTAGTTGACAAAACTTTGATATCTTTTACAGAAAGCGAGATACGTGAGCTTAAAGTTTGCGTCATGCTTTTTGAGCG</canonical>
            <polymorphic>CAGAAGCGTCCTTCAATATCCTTTACATTTTTTCCGTTGATCTTTTTTTTCAAGTTCTGCAACCTGAATTTTTTTTTGTAAAAGACAATTTCCAATATAAAAATATTTTTAATTAGAGATTTCTGGTCCCTGTGCTCATTAACCACATAATTTCTCAAAAAGATGATGTACATAGTGTTATGTACAAATATTTGTGTGCATAGAACTGACACCAATGAGCAAATAGACCAGTGAACATGGCAAGATAAGATAAGAGGTCTCATGGGAAAAGACATTCTTCTTCTTTTTCTTACCACCACGCATTCTGTCCCCCTTAGAATTATGACGTCTTCTAGAAAAGTGCTCCATGCTCTTCTAATTCTCTCATTTTCCAATTTGGCGGCTTCCAAAACCAAGTGCCTTATGGCCACCGGAGTTTTAAAGTGTCCCACTGATCCACATGCTGTCAAAAAGGTCCATATTGATCTTTGGGATGAGGATTGTGAGTTTCTGAATTTTTKAAGTTCTCGAATTTTTGAGTTTTGAATTCTTGAATCTTTGAATTTTTGAATTTTTGAATTTTTGAATTTTTGAGTTTTCGAATTTTTGAATTTTCAAAATTTTAACCTCTAAATTTTTGCAAACTGCCTAGCTGCTTCCAGCCCTTCCCCTGGAATCCGATGACCTAATGGGTCGAACCTGGAGTGATATCCATGGGAATTTCCGAGTAACTGGATGTGCAAGTGATTTTGGTCCCATTAACACCCCCGACCCATATATTTATATCCAACACGATTGCCCACATCGAGACACAAATGCAACGGATCCGATTCAGGTGGGATTTTTAGGACCATGTATTTGAGCTCAATTATCTCGCTTCTTGTAAGAGATATCAGATTTTTGTCAACTGCTGAAATGTTTTTCTTTAAATTTTGCATATTTTATTAGTTGACAAAACTTTGATATCTTTTACAGAAAGCGAGATACGTGAGCTTAAAGTTTGCGTCATGCTTTTTGAGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>279 167 136 109 103 81 68 30 27</canonical_bands>
                <polymorphic_bands>279 184 167 136 109 68 30 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAAAGTGTCCCACTGATCC</pcr_primer_p1>
		<pcr_primer_p2>CATGGATATCACTCCAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>278</pcr_amplicon_size>
		<canonical_amplicon>TTAAAGTGTCCCACTGATCCACATGCTGTCAAAAAGGTCCATATTGATCTTTGGGATGAGGATTGTGAGTTTCTGAATTTTTTAAGTTCTCGAATTTTTGAGTTTTGAATTCTTGAATCTTTGAATTTTTGAATTTTTGAATTTTTGAATTTTTGAGTTTTCGAATTTTTGAATTTTCAAAATTTTAACCTCTAAATTTTTGCAAACTGCCTAGCTGCTTCCAGCCCTTCCCCTGGAATCCGATGACCTAATGGGTCGAACCTGGAGTGATATCCATG</canonical_amplicon>
		<polymorphic_amplicon>TTAAAGTGTCCCACTGATCCACATGCTGTCAAAAAGGTCCATATTGATCTTTGGGATGAGGATTGTGAGTTTCTGAATTTTTKAAGTTCTCGAATTTTTGAGTTTTGAATTCTTGAATCTTTGAATTTTTGAATTTTTGAATTTTTGAATTTTTGAGTTTTCGAATTTTTGAATTTTCAAAATTTTAACCTCTAAATTTTTGCAAACTGCCTAGCTGCTTCCAGCCCTTCCCCTGGAATCCGATGACCTAATGGGTCGAACCTGGAGTGATATCCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32651</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>106142</contig_pos>
        <strand></strand>
        <context>TGCTCGTCTG[C/T]STCTTcttca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCGCGCTCAAGGAGGAGTTCGCAGAAATGGTAGAGCGGCTGCTCGTCTG</left_flank>
        <right_flank>GTCTTCTTCAAGGTAATTTATCTCAGTTACTGTAGAAGATATCAAAAAGT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGCTCCTCACAACCAGCAGTAGTTGGTTGGAGAACAGTTGGTTGGGAGCTGTCACAACTCATTTTTTGGTAAGTTTGCTTTGTTCCAGTTTTTTGAAACCTCAACTTTGACCTACATAGACTCTCTAGCTTGGAACGCGGGCTCCGTAGACTTCAATTTTGACCCACTTCGTCTCGATTCCTTCAATAGATATTGAAAAGTTGTCAACAAATCGAATCTTTTTATTTTTCAAGATAAAACGATCCTAACACCTTGAAACCTGCATTTAGAGGGTCTTCACACACTTTCAACTTTAACTTAACTCATCTCGGTTATTTAAGAAGATATAAGAAATTGGTAAAGTAACAAAATGTTTATCATAAAAGTTTGTACATTTTATCAGTAGACTACTTTTTGTTATCTTTCAAAGCAACTGAGATAATTGAAGCCAACGTTGACGACTGGGGTGCCCGCGCTCAAGGAGGAGTTCGCAGAAATGGTAGAGCGGCTGCTCGTCTGCGTCTTCTTCAAGGTAATTTATCTCAGTTACTGTAGAAGATATCAAAAAGTTGTCAACTAACAAAATTTTTATCATAATATCTCCATAATTTTATCAAAAGACTATTTTTTGATAACTCTCACAGGAACCGAGGAAAATAGGGTTTAAGTAGGCCCCTCTCTAAAGTGGCTCTTCTATTTTTTCACTTTTTCAAAAAAAACTGAACCAAATTTAATATTTTTGAATATAAATAATTATTACAAAAATGTTCATCAAACAATACATAAAAAGTAAGATCCTCAAATTTTCAGAACATCTTTAAAATGCTACCCTCCCTCGTGCTCTCCATCCTGCTCTCGGCTCCAATGGCACTGTGCCAAGCGCCCTTCTGGATGCCAAATATGCAACAATTCTCATTTTTGACCGAAACCGACTTTCGAAATGCTCTTCTCTTGCCAACTACAAATACACGACGAGTTAGAAGTCTATTCCATGATATGCGCATTCCTATGCAGGTTGGT</canonical>
            <polymorphic>TAGCTCCTCACAACCAGCAGTAGTTGGTTGGAGAACAGTTGGTTGGGAGCTGTCACAACTCATTTTTTGGTAAGTTTGCTTTGTTCCAGTTTTTTGAAACCTCAACTTTGACCTACATAGACTCTCTAGCTTGGAACGCGGGCTCCGTAGACTTCAATTTTGACCCACTTCGTCTCGATTCCTTCAATAGATATTGAAAAGTTGTCAACAAATCGAATCTTTTTATTTTTCAAGATAAAACGATCCTAACACCTTGAAACCTGCATTTAGAGGGTCTTCACACACTTTCAACTTTAACTTAACTCATCTCGGTTATTTAAGAAGATATAAGAAATTGGTAAAGTAACAAAATGTTTATCATAAAAGTTTGTACATTTTATCAGTAGACTACTTTTTGTTATCTTTCAAAGCAACTGAGATAATTGAAGCCAACGTTGACGACTGGGGTGCCCGCGCTCAAGGAGGAGTTCGCAGAAATGGTAGAGCGGCTGCTCGTCTGYGTCTTCTTCAAGGTAATTTATCTCAGTTACTGTAGAAGATATCAAAAAGTTGTCAACTAACAAAATTTTTATCATAATATCTCCATAATTTTATCAAAAGACTATTTTTTGATAACTCTCACAGGAACCGAGGAAAATAGGGTTTAAGTAGGCCCCTCTCTAAAGTGGCTCTTCTATTTTTTCACTTTTTCAAAAAAAACTGAACCAAATTTAATATTTTTGAATATAAATAATTATTACAAAAATGTTCATCAAACAATACATAAAAAGTAAGATCCTCAAATTTTCAGAACATCTTTAAAATGCTACCCTCCCTCGTGCTCTCCATCCTGCTCTCGGCTCCAATGGCACTGTGCCAAGCGCCCTTCTGGATGCCAAATATGCAACAATTCTCATTTTTGACCGAAACCGACTTTCGAAATGCTCTTCTCTTGCCAACTACAAATACACGACGAGTTAGAAGTCTATTCCATGATATGCGCATTCCTATGCAGGTTGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAGATAAAACGATCCTAAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATAGAAGAGCCACTTTAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>453</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAGATAAAACGATCCTAACACCTTGAAACCTGCATTTAGAGGGTCTTCACACACTTTCAACTTTAACTTAACTCATCTCGGTTATTTAAGAAGATATAAGAAATTGGTAAAGTAACAAAATGTTTATCATAAAAGTTTGTACATTTTATCAGTAGACTACTTTTTGTTATCTTTCAAAGCAACTGAGATAATTGAAGCCAACGTTGACGACTGGGGTGCCCGCGCTCAAGGAGGAGTTCGCAGAAATGGTAGAGCGGCTGCTCGTCTGCGTCTTCTTCAAGGTAATTTATCTCAGTTACTGTAGAAGATATCAAAAAGTTGTCAACTAACAAAATTTTTATCATAATATCTCCATAATTTTATCAAAAGACTATTTTTTGATAACTCTCACAGGAACCGAGGAAAATAGGGTTTAAGTAGGCCCCTCTCTAAAGTGGCTCTTCTATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAGATAAAACGATCCTAACACCTTGAAACCTGCATTTAGAGGGTCTTCACACACTTTCAACTTTAACTTAACTCATCTCGGTTATTTAAGAAGATATAAGAAATTGGTAAAGTAACAAAATGTTTATCATAAAAGTTTGTACATTTTATCAGTAGACTACTTTTTGTTATCTTTCAAAGCAACTGAGATAATTGAAGCCAACGTTGACGACTGGGGTGCCCGCGCTCAAGGAGGAGTTCGCAGAAATGGTAGAGCGGCTGCTCGTCTGYGTCTTCTTCAAGGTAATTTATCTCAGTTACTGTAGAAGATATCAAAAAGTTGTCAACTAACAAAATTTTTATCATAATATCTCCATAATTTTATCAAAAGACTATTTTTTGATAACTCTCACAGGAACCGAGGAAAATAGGGTTTAAGTAGGCCCCTCTCTAAAGTGGCTCTTCTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32652</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>106143</contig_pos>
        <strand></strand>
        <context>GCTCGTCTGY[G/C]TCTTcttcaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CCGCGCTCAAGGAGGAGTTCGCAGAAATGGTAGAGCGGCTGCTCGTCTGC</left_flank>
        <right_flank>TCTTCTTCAAGGTAATTTATCTCAGTTACTGTAGAAGATATCAAAAAGTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTCCTCACAACCAGCAGTAGTTGGTTGGAGAACAGTTGGTTGGGAGCTGTCACAACTCATTTTTTGGTAAGTTTGCTTTGTTCCAGTTTTTTGAAACCTCAACTTTGACCTACATAGACTCTCTAGCTTGGAACGCGGGCTCCGTAGACTTCAATTTTGACCCACTTCGTCTCGATTCCTTCAATAGATATTGAAAAGTTGTCAACAAATCGAATCTTTTTATTTTTCAAGATAAAACGATCCTAACACCTTGAAACCTGCATTTAGAGGGTCTTCACACACTTTCAACTTTAACTTAACTCATCTCGGTTATTTAAGAAGATATAAGAAATTGGTAAAGTAACAAAATGTTTATCATAAAAGTTTGTACATTTTATCAGTAGACTACTTTTTGTTATCTTTCAAAGCAACTGAGATAATTGAAGCCAACGTTGACGACTGGGGTGCCCGCGCTCAAGGAGGAGTTCGCAGAAATGGTAGAGCGGCTGCTCGTCTGCGTCTTCTTCAAGGTAATTTATCTCAGTTACTGTAGAAGATATCAAAAAGTTGTCAACTAACAAAATTTTTATCATAATATCTCCATAATTTTATCAAAAGACTATTTTTTGATAACTCTCACAGGAACCGAGGAAAATAGGGTTTAAGTAGGCCCCTCTCTAAAGTGGCTCTTCTATTTTTTCACTTTTTCAAAAAAAACTGAACCAAATTTAATATTTTTGAATATAAATAATTATTACAAAAATGTTCATCAAACAATACATAAAAAGTAAGATCCTCAAATTTTCAGAACATCTTTAAAATGCTACCCTCCCTCGTGCTCTCCATCCTGCTCTCGGCTCCAATGGCACTGTGCCAAGCGCCCTTCTGGATGCCAAATATGCAACAATTCTCATTTTTGACCGAAACCGACTTTCGAAATGCTCTTCTCTTGCCAACTACAAATACACGACGAGTTAGAAGTCTATTCCATGATATGCGCATTCCTATGCAGGTTGGTT</canonical>
            <polymorphic>AGCTCCTCACAACCAGCAGTAGTTGGTTGGAGAACAGTTGGTTGGGAGCTGTCACAACTCATTTTTTGGTAAGTTTGCTTTGTTCCAGTTTTTTGAAACCTCAACTTTGACCTACATAGACTCTCTAGCTTGGAACGCGGGCTCCGTAGACTTCAATTTTGACCCACTTCGTCTCGATTCCTTCAATAGATATTGAAAAGTTGTCAACAAATCGAATCTTTTTATTTTTCAAGATAAAACGATCCTAACACCTTGAAACCTGCATTTAGAGGGTCTTCACACACTTTCAACTTTAACTTAACTCATCTCGGTTATTTAAGAAGATATAAGAAATTGGTAAAGTAACAAAATGTTTATCATAAAAGTTTGTACATTTTATCAGTAGACTACTTTTTGTTATCTTTCAAAGCAACTGAGATAATTGAAGCCAACGTTGACGACTGGGGTGCCCGCGCTCAAGGAGGAGTTCGCAGAAATGGTAGAGCGGCTGCTCGTCTGCSTCTTCTTCAAGGTAATTTATCTCAGTTACTGTAGAAGATATCAAAAAGTTGTCAACTAACAAAATTTTTATCATAATATCTCCATAATTTTATCAAAAGACTATTTTTTGATAACTCTCACAGGAACCGAGGAAAATAGGGTTTAAGTAGGCCCCTCTCTAAAGTGGCTCTTCTATTTTTTCACTTTTTCAAAAAAAACTGAACCAAATTTAATATTTTTGAATATAAATAATTATTACAAAAATGTTCATCAAACAATACATAAAAAGTAAGATCCTCAAATTTTCAGAACATCTTTAAAATGCTACCCTCCCTCGTGCTCTCCATCCTGCTCTCGGCTCCAATGGCACTGTGCCAAGCGCCCTTCTGGATGCCAAATATGCAACAATTCTCATTTTTGACCGAAACCGACTTTCGAAATGCTCTTCTCTTGCCAACTACAAATACACGACGAGTTAGAAGTCTATTCCATGATATGCGCATTCCTATGCAGGTTGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAGATAAAACGATCCTAAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATAGAAGAGCCACTTTAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>453</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAGATAAAACGATCCTAACACCTTGAAACCTGCATTTAGAGGGTCTTCACACACTTTCAACTTTAACTTAACTCATCTCGGTTATTTAAGAAGATATAAGAAATTGGTAAAGTAACAAAATGTTTATCATAAAAGTTTGTACATTTTATCAGTAGACTACTTTTTGTTATCTTTCAAAGCAACTGAGATAATTGAAGCCAACGTTGACGACTGGGGTGCCCGCGCTCAAGGAGGAGTTCGCAGAAATGGTAGAGCGGCTGCTCGTCTGCGTCTTCTTCAAGGTAATTTATCTCAGTTACTGTAGAAGATATCAAAAAGTTGTCAACTAACAAAATTTTTATCATAATATCTCCATAATTTTATCAAAAGACTATTTTTTGATAACTCTCACAGGAACCGAGGAAAATAGGGTTTAAGTAGGCCCCTCTCTAAAGTGGCTCTTCTATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAGATAAAACGATCCTAACACCTTGAAACCTGCATTTAGAGGGTCTTCACACACTTTCAACTTTAACTTAACTCATCTCGGTTATTTAAGAAGATATAAGAAATTGGTAAAGTAACAAAATGTTTATCATAAAAGTTTGTACATTTTATCAGTAGACTACTTTTTGTTATCTTTCAAAGCAACTGAGATAATTGAAGCCAACGTTGACGACTGGGGTGCCCGCGCTCAAGGAGGAGTTCGCAGAAATGGTAGAGCGGCTGCTCGTCTGCSTCTTCTTCAAGGTAATTTATCTCAGTTACTGTAGAAGATATCAAAAAGTTGTCAACTAACAAAATTTTTATCATAATATCTCCATAATTTTATCAAAAGACTATTTTTTGATAACTCTCACAGGAACCGAGGAAAATAGGGTTTAAGTAGGCCCCTCTCTAAAGTGGCTCTTCTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32653</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>106157</contig_pos>
        <strand></strand>
        <context>Tcttcaaggt[A/G]atttatctca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGTTCGCAGAAATGGTAGAGCGGCTGCTCGTCTGCGTCTTCTTCAAGGT</left_flank>
        <right_flank>ATTTATCTCAGTTACTGTAGAAGATATCAAAAAGTTGTCAACTAACAAAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCAGTAGTTGGTTGGAGAACAGTTGGTTGGGAGCTGTCACAACTCATTTTTTGGTAAGTTTGCTTTGTTCCAGTTTTTTGAAACCTCAACTTTGACCTACATAGACTCTCTAGCTTGGAACGCGGGCTCCGTAGACTTCAATTTTGACCCACTTCGTCTCGATTCCTTCAATAGATATTGAAAAGTTGTCAACAAATCGAATCTTTTTATTTTTCAAGATAAAACGATCCTAACACCTTGAAACCTGCATTTAGAGGGTCTTCACACACTTTCAACTTTAACTTAACTCATCTCGGTTATTTAAGAAGATATAAGAAATTGGTAAAGTAACAAAATGTTTATCATAAAAGTTTGTACATTTTATCAGTAGACTACTTTTTGTTATCTTTCAAAGCAACTGAGATAATTGAAGCCAACGTTGACGACTGGGGTGCCCGCGCTCAAGGAGGAGTTCGCAGAAATGGTAGAGCGGCTGCTCGTCTGCGTCTTCTTCAAGGTAATTTATCTCAGTTACTGTAGAAGATATCAAAAAGTTGTCAACTAACAAAATTTTTATCATAATATCTCCATAATTTTATCAAAAGACTATTTTTTGATAACTCTCACAGGAACCGAGGAAAATAGGGTTTAAGTAGGCCCCTCTCTAAAGTGGCTCTTCTATTTTTTCACTTTTTCAAAAAAAACTGAACCAAATTTAATATTTTTGAATATAAATAATTATTACAAAAATGTTCATCAAACAATACATAAAAAGTAAGATCCTCAAATTTTCAGAACATCTTTAAAATGCTACCCTCCCTCGTGCTCTCCATCCTGCTCTCGGCTCCAATGGCACTGTGCCAAGCGCCCTTCTGGATGCCAAATATGCAACAATTCTCATTTTTGACCGAAACCGACTTTCGAAATGCTCTTCTCTTGCCAACTACAAATACACGACGAGTTAGAAGTCTATTCCATGATATGCGCATTCCTATGCAGGTTGGTTTTTGAAAATTTAAG</canonical>
            <polymorphic>AGCAGTAGTTGGTTGGAGAACAGTTGGTTGGGAGCTGTCACAACTCATTTTTTGGTAAGTTTGCTTTGTTCCAGTTTTTTGAAACCTCAACTTTGACCTACATAGACTCTCTAGCTTGGAACGCGGGCTCCGTAGACTTCAATTTTGACCCACTTCGTCTCGATTCCTTCAATAGATATTGAAAAGTTGTCAACAAATCGAATCTTTTTATTTTTCAAGATAAAACGATCCTAACACCTTGAAACCTGCATTTAGAGGGTCTTCACACACTTTCAACTTTAACTTAACTCATCTCGGTTATTTAAGAAGATATAAGAAATTGGTAAAGTAACAAAATGTTTATCATAAAAGTTTGTACATTTTATCAGTAGACTACTTTTTGTTATCTTTCAAAGCAACTGAGATAATTGAAGCCAACGTTGACGACTGGGGTGCCCGCGCTCAAGGAGGAGTTCGCAGAAATGGTAGAGCGGCTGCTCGTCTGCGTCTTCTTCAAGGTRATTTATCTCAGTTACTGTAGAAGATATCAAAAAGTTGTCAACTAACAAAATTTTTATCATAATATCTCCATAATTTTATCAAAAGACTATTTTTTGATAACTCTCACAGGAACCGAGGAAAATAGGGTTTAAGTAGGCCCCTCTCTAAAGTGGCTCTTCTATTTTTTCACTTTTTCAAAAAAAACTGAACCAAATTTAATATTTTTGAATATAAATAATTATTACAAAAATGTTCATCAAACAATACATAAAAAGTAAGATCCTCAAATTTTCAGAACATCTTTAAAATGCTACCCTCCCTCGTGCTCTCCATCCTGCTCTCGGCTCCAATGGCACTGTGCCAAGCGCCCTTCTGGATGCCAAATATGCAACAATTCTCATTTTTGACCGAAACCGACTTTCGAAATGCTCTTCTCTTGCCAACTACAAATACACGACGAGTTAGAAGTCTATTCCATGATATGCGCATTCCTATGCAGGTTGGTTTTTGAAAATTTAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>177 140 121 120 106 94 88 50 49 24 23 8</canonical_bands>
                <polymorphic_bands>177 143 140 121 120 106 88 50 24 23 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAGATAAAACGATCCTAAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATAGAAGAGCCACTTTAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>453</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAGATAAAACGATCCTAACACCTTGAAACCTGCATTTAGAGGGTCTTCACACACTTTCAACTTTAACTTAACTCATCTCGGTTATTTAAGAAGATATAAGAAATTGGTAAAGTAACAAAATGTTTATCATAAAAGTTTGTACATTTTATCAGTAGACTACTTTTTGTTATCTTTCAAAGCAACTGAGATAATTGAAGCCAACGTTGACGACTGGGGTGCCCGCGCTCAAGGAGGAGTTCGCAGAAATGGTAGAGCGGCTGCTCGTCTGCGTCTTCTTCAAGGTAATTTATCTCAGTTACTGTAGAAGATATCAAAAAGTTGTCAACTAACAAAATTTTTATCATAATATCTCCATAATTTTATCAAAAGACTATTTTTTGATAACTCTCACAGGAACCGAGGAAAATAGGGTTTAAGTAGGCCCCTCTCTAAAGTGGCTCTTCTATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAGATAAAACGATCCTAACACCTTGAAACCTGCATTTAGAGGGTCTTCACACACTTTCAACTTTAACTTAACTCATCTCGGTTATTTAAGAAGATATAAGAAATTGGTAAAGTAACAAAATGTTTATCATAAAAGTTTGTACATTTTATCAGTAGACTACTTTTTGTTATCTTTCAAAGCAACTGAGATAATTGAAGCCAACGTTGACGACTGGGGTGCCCGCGCTCAAGGAGGAGTTCGCAGAAATGGTAGAGCGGCTGCTCGTCTGCGTCTTCTTCAAGGTRATTTATCTCAGTTACTGTAGAAGATATCAAAAAGTTGTCAACTAACAAAATTTTTATCATAATATCTCCATAATTTTATCAAAAGACTATTTTTTGATAACTCTCACAGGAACCGAGGAAAATAGGGTTTAAGTAGGCCCCTCTCTAAAGTGGCTCTTCTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32654</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>106209</contig_pos>
        <strand></strand>
        <context>ctaacaaaat[T/G]tttatcataa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTTATCTCAGTTACTGTAGAAGATATCAAAAAGTTGTCAACTAACAAAAT</left_flank>
        <right_flank>TTTATCATAATATCTCCATAATTTTATCAAAAGACTATTTTTTGATAACT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTAAGTTTGCTTTGTTCCAGTTTTTTGAAACCTCAACTTTGACCTACATAGACTCTCTAGCTTGGAACGCGGGCTCCGTAGACTTCAATTTTGACCCACTTCGTCTCGATTCCTTCAATAGATATTGAAAAGTTGTCAACAAATCGAATCTTTTTATTTTTCAAGATAAAACGATCCTAACACCTTGAAACCTGCATTTAGAGGGTCTTCACACACTTTCAACTTTAACTTAACTCATCTCGGTTATTTAAGAAGATATAAGAAATTGGTAAAGTAACAAAATGTTTATCATAAAAGTTTGTACATTTTATCAGTAGACTACTTTTTGTTATCTTTCAAAGCAACTGAGATAATTGAAGCCAACGTTGACGACTGGGGTGCCCGCGCTCAAGGAGGAGTTCGCAGAAATGGTAGAGCGGCTGCTCGTCTGCGTCTTCTTCAAGGTAATTTATCTCAGTTACTGTAGAAGATATCAAAAAGTTGTCAACTAACAAAATTTTTATCATAATATCTCCATAATTTTATCAAAAGACTATTTTTTGATAACTCTCACAGGAACCGAGGAAAATAGGGTTTAAGTAGGCCCCTCTCTAAAGTGGCTCTTCTATTTTTTCACTTTTTCAAAAAAAACTGAACCAAATTTAATATTTTTGAATATAAATAATTATTACAAAAATGTTCATCAAACAATACATAAAAAGTAAGATCCTCAAATTTTCAGAACATCTTTAAAATGCTACCCTCCCTCGTGCTCTCCATCCTGCTCTCGGCTCCAATGGCACTGTGCCAAGCGCCCTTCTGGATGCCAAATATGCAACAATTCTCATTTTTGACCGAAACCGACTTTCGAAATGCTCTTCTCTTGCCAACTACAAATACACGACGAGTTAGAAGTCTATTCCATGATATGCGCATTCCTATGCAGGTTGGTTTTTGAAAATTTAAGCTTTGAGCCAGTTTATCTGGGTTACTGTAAGAGAAATCAAAAAATTGTCAAC</canonical>
            <polymorphic>TGGTAAGTTTGCTTTGTTCCAGTTTTTTGAAACCTCAACTTTGACCTACATAGACTCTCTAGCTTGGAACGCGGGCTCCGTAGACTTCAATTTTGACCCACTTCGTCTCGATTCCTTCAATAGATATTGAAAAGTTGTCAACAAATCGAATCTTTTTATTTTTCAAGATAAAACGATCCTAACACCTTGAAACCTGCATTTAGAGGGTCTTCACACACTTTCAACTTTAACTTAACTCATCTCGGTTATTTAAGAAGATATAAGAAATTGGTAAAGTAACAAAATGTTTATCATAAAAGTTTGTACATTTTATCAGTAGACTACTTTTTGTTATCTTTCAAAGCAACTGAGATAATTGAAGCCAACGTTGACGACTGGGGTGCCCGCGCTCAAGGAGGAGTTCGCAGAAATGGTAGAGCGGCTGCTCGTCTGCGTCTTCTTCAAGGTAATTTATCTCAGTTACTGTAGAAGATATCAAAAAGTTGTCAACTAACAAAATKTTTATCATAATATCTCCATAATTTTATCAAAAGACTATTTTTTGATAACTCTCACAGGAACCGAGGAAAATAGGGTTTAAGTAGGCCCCTCTCTAAAGTGGCTCTTCTATTTTTTCACTTTTTCAAAAAAAACTGAACCAAATTTAATATTTTTGAATATAAATAATTATTACAAAAATGTTCATCAAACAATACATAAAAAGTAAGATCCTCAAATTTTCAGAACATCTTTAAAATGCTACCCTCCCTCGTGCTCTCCATCCTGCTCTCGGCTCCAATGGCACTGTGCCAAGCGCCCTTCTGGATGCCAAATATGCAACAATTCTCATTTTTGACCGAAACCGACTTTCGAAATGCTCTTCTCTTGCCAACTACAAATACACGACGAGTTAGAAGTCTATTCCATGATATGCGCATTCCTATGCAGGTTGGTTTTTGAAAATTTAAGCTTTGAGCCAGTTTATCTGGGTTACTGTAAGAGAAATCAAAAAATTGTCAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>496 226 144 74 60</canonical_bands>
                <polymorphic_bands>640 226 74 60</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>177 121 120 106 94 88 88 50 50 49 24 23 10</canonical_bands>
                <polymorphic_bands>177 121 120 106 94 88 88 72 50 50 24 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAGATAAAACGATCCTAAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATAGAAGAGCCACTTTAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>453</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAGATAAAACGATCCTAACACCTTGAAACCTGCATTTAGAGGGTCTTCACACACTTTCAACTTTAACTTAACTCATCTCGGTTATTTAAGAAGATATAAGAAATTGGTAAAGTAACAAAATGTTTATCATAAAAGTTTGTACATTTTATCAGTAGACTACTTTTTGTTATCTTTCAAAGCAACTGAGATAATTGAAGCCAACGTTGACGACTGGGGTGCCCGCGCTCAAGGAGGAGTTCGCAGAAATGGTAGAGCGGCTGCTCGTCTGCGTCTTCTTCAAGGTAATTTATCTCAGTTACTGTAGAAGATATCAAAAAGTTGTCAACTAACAAAATTTTTATCATAATATCTCCATAATTTTATCAAAAGACTATTTTTTGATAACTCTCACAGGAACCGAGGAAAATAGGGTTTAAGTAGGCCCCTCTCTAAAGTGGCTCTTCTATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAGATAAAACGATCCTAACACCTTGAAACCTGCATTTAGAGGGTCTTCACACACTTTCAACTTTAACTTAACTCATCTCGGTTATTTAAGAAGATATAAGAAATTGGTAAAGTAACAAAATGTTTATCATAAAAGTTTGTACATTTTATCAGTAGACTACTTTTTGTTATCTTTCAAAGCAACTGAGATAATTGAAGCCAACGTTGACGACTGGGGTGCCCGCGCTCAAGGAGGAGTTCGCAGAAATGGTAGAGCGGCTGCTCGTCTGCGTCTTCTTCAAGGTAATTTATCTCAGTTACTGTAGAAGATATCAAAAAGTTGTCAACTAACAAAATKTTTATCATAATATCTCCATAATTTTATCAAAAGACTATTTTTTGATAACTCTCACAGGAACCGAGGAAAATAGGGTTTAAGTAGGCCCCTCTCTAAAGTGGCTCTTCTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32655</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>109227</contig_pos>
        <strand>+</strand>
        <context>AATTTTCTGW[A/T]GATTATTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCCGAGGAAAAAATTAGGTCATGGGATACTGAAAATGCAGAATTTTCTGA</left_flank>
        <right_flank>GATTATTTTGGTATAAAAATTACTAAAATCGGTTCGGTGGTTCTTGAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGAGAAACTCAAAAAAATAAAAAAATTTTTTTGGAAAAATTTCAAAAAATCAAATTTTGTATTTTTCAATTTTCTCAAAAACTACCGAACCGGATTTTCTGGTTTTCATATCAAAATGATCCTCAGAAATTGAAATATATAAAGTGCGCTCCATTGACAAGTTTTTTATTTTTAGGATTCATTCACGAGCACCAACGTGAGGATCGTGATCAATACGTCTCAATTTTATACCAAAATGTGATTCAAGGTAAGAAAGACATCCGAAAAAACAGACAGACAGACAGAAAATGCTTTTTTCAGGTGCCAACACAGATTTTGATAAGCTGAGCAATTTGGGATTATCGTATTACGGAGAACACTATGATTATACATCTATTATGCATTATGAAGCAAATGAGGGGTCGAGAAATGGGAAAAATACCATTGAGGCGAAGGTAAGGGGGCGTGGCCGAGGAAAAAATTAGGTCATGGGATACTGAAAATGCAGAATTTTCTGAGGATTATTTTGGTATAAAAATTACTAAAATCGGTTCGGTGGTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAACCGATTTTTATGGTTTTTATACCAAAATGATCCTTGAAAAATGCTGCAGTTTTTAATTTTTAACCAATTTTTCCAGAATAATCATTTCACTTCAATTATGGGAAAAGCCAACGACTTCTCCACATCCGACCTTCGTCGAGTGAATCGAGCCTATAAATGCTCCATTTTCTAAATTAGTTTTTTTTGGTTAATTGCTAATTATGATACGTGTAATTTATGAGTCATTAATTACCCTGAAGTTTCCCCCGGTGCTTTTTGTTTGTCTGTACATATTGAAACAATGAATTTTTCCCTACTTTTTTGGACATGCATTTTTAAAAGCTAGTTTTCTCAGAGATGACTTGTTTAATCGCAATGATTAATATACCAAAATA</canonical>
            <polymorphic>TGTGAGAAACTCAAAAAAATAAAAAAATTTTTTTGGAAAAATTTCAAAAAATCAAATTTTGTATTTTTCAATTTTCTCAAAAACTACCGAACCGGATTTTCTGGTTTTCATATCAAAATGATCCTCAGAAATTGAAATATATAAAGTGCGCTCCATTGACAAGTTTTTTATTTTTAGGATTCATTCACGAGCACCAACGTGAGGATCGTGATCAATACGTCTCAATTTTATACCAAAATGTGATTCAAGGTAAGAAAGACATCCGAAAAAACAGACAGACAGACAGAAAATGCTTTTTTCAGGTGCCAACACAGATTTTGATAAGCTGAGCAATTTGGGATTATCGTATTACGGAGAACACTATGATTATACATCTATTATGCATTATGAAGCAAATGAGGGGTCGAGAAATGGGAAAAATACCATTGAGGCGAAGGTAAGGGGGCGTGGCCGAGGAAAAAATTAGGTCATGGGATACTGAAAATGCAGAATTTTCTGAWGATTATTTTGGTATAAAAATTACTAAAATCGGTTCGGTGGTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAACCGATTTTTATGGTTTTTATACCAAAATGATCCTTGAAAAATGCTGCAGTTTTTAATTTTTAACCAATTTTTCCAGAATAATCATTTCACTTCAATTATGGGAAAAGCCAACGACTTCTCCACATCCGACCTTCGTCGAGTGAATCGAGCCTATAAATGCTCCATTTTCTAAATTAGTTTTTTTTGGTTAATTGCTAATTATGATACGTGTAATTTATGAGTCATTAATTACCCTGAAGTTTCCCCCGGTGCTTTTTGTTTGTCTGTACATATTGAAACAATGAATTTTTCCCTACTTTTTTGGACATGCATTTTTAAAAGCTAGTTTTCTCAGAGATGACTTGTTTAATCGCAATGATTAATATACCAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>460 202 170 124 44</canonical_bands>
                <polymorphic_bands>630 202 124 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGCATTATGAAGCAAATGAG</pcr_primer_p1>
		<pcr_primer_p2>GTTGACAGGTTTTTGAGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATGCATTATGAAGCAAATGAGGGGTCGAGAAATGGGAAAAATACCATTGAGGCGAAGGTAAGGGGGCGTGGCCGAGGAAAAAATTAGGTCATGGGATACTGAAAATGCAGAATTTTCTGAGGATTATTTTGGTATAAAAATTACTAAAATCGGTTCGGTGGTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAAC</canonical_amplicon>
		<polymorphic_amplicon>TATGCATTATGAAGCAAATGAGGGGTCGAGAAATGGGAAAAATACCATTGAGGCGAAGGTAAGGGGGCGTGGCCGAGGAAAAAATTAGGTCATGGGATACTGAAAATGCAGAATTTTCTGAWGATTATTTTGGTATAAAAATTACTAAAATCGGTTCGGTGGTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32656</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>109294</contig_pos>
        <strand>+</strand>
        <context>AAAGTACAAG[A/G]TTTGATTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTACTAAAATCGGTTCGGTGGTTCTTGAGAACATTGGAAAGTACAAG</left_flank>
        <right_flank>TTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAATTTTCTCAAAAACTACCGAACCGGATTTTCTGGTTTTCATATCAAAATGATCCTCAGAAATTGAAATATATAAAGTGCGCTCCATTGACAAGTTTTTTATTTTTAGGATTCATTCACGAGCACCAACGTGAGGATCGTGATCAATACGTCTCAATTTTATACCAAAATGTGATTCAAGGTAAGAAAGACATCCGAAAAAACAGACAGACAGACAGAAAATGCTTTTTTCAGGTGCCAACACAGATTTTGATAAGCTGAGCAATTTGGGATTATCGTATTACGGAGAACACTATGATTATACATCTATTATGCATTATGAAGCAAATGAGGGGTCGAGAAATGGGAAAAATACCATTGAGGCGAAGGTAAGGGGGCGTGGCCGAGGAAAAAATTAGGTCATGGGATACTGAAAATGCAGAATTTTCTGAGGATTATTTTGGTATAAAAATTACTAAAATCGGTTCGGTGGTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAACCGATTTTTATGGTTTTTATACCAAAATGATCCTTGAAAAATGCTGCAGTTTTTAATTTTTAACCAATTTTTCCAGAATAATCATTTCACTTCAATTATGGGAAAAGCCAACGACTTCTCCACATCCGACCTTCGTCGAGTGAATCGAGCCTATAAATGCTCCATTTTCTAAATTAGTTTTTTTTGGTTAATTGCTAATTATGATACGTGTAATTTATGAGTCATTAATTACCCTGAAGTTTCCCCCGGTGCTTTTTGTTTGTCTGTACATATTGAAACAATGAATTTTTCCCTACTTTTTTGGACATGCATTTTTAAAAGCTAGTTTTCTCAGAGATGACTTGTTTAATCGCAATGATTAATATACCAAAATAATTGTCTTGAAATTCCAGACATTTTAATTCAAAATTCGACTATTTTACCTTAAAATTGAAAACTGAA</canonical>
            <polymorphic>TCAATTTTCTCAAAAACTACCGAACCGGATTTTCTGGTTTTCATATCAAAATGATCCTCAGAAATTGAAATATATAAAGTGCGCTCCATTGACAAGTTTTTTATTTTTAGGATTCATTCACGAGCACCAACGTGAGGATCGTGATCAATACGTCTCAATTTTATACCAAAATGTGATTCAAGGTAAGAAAGACATCCGAAAAAACAGACAGACAGACAGAAAATGCTTTTTTCAGGTGCCAACACAGATTTTGATAAGCTGAGCAATTTGGGATTATCGTATTACGGAGAACACTATGATTATACATCTATTATGCATTATGAAGCAAATGAGGGGTCGAGAAATGGGAAAAATACCATTGAGGCGAAGGTAAGGGGGCGTGGCCGAGGAAAAAATTAGGTCATGGGATACTGAAAATGCAGAATTTTCTGAGGATTATTTTGGTATAAAAATTACTAAAATCGGTTCGGTGGTTCTTGAGAACATTGGAAAGTACAAGRTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAACCGATTTTTATGGTTTTTATACCAAAATGATCCTTGAAAAATGCTGCAGTTTTTAATTTTTAACCAATTTTTCCAGAATAATCATTTCACTTCAATTATGGGAAAAGCCAACGACTTCTCCACATCCGACCTTCGTCGAGTGAATCGAGCCTATAAATGCTCCATTTTCTAAATTAGTTTTTTTTGGTTAATTGCTAATTATGATACGTGTAATTTATGAGTCATTAATTACCCTGAAGTTTCCCCCGGTGCTTTTTGTTTGTCTGTACATATTGAAACAATGAATTTTTCCCTACTTTTTTGGACATGCATTTTTAAAAGCTAGTTTTCTCAGAGATGACTTGTTTAATCGCAATGATTAATATACCAAAATAATTGTCTTGAAATTCCAGACATTTTAATTCAAAATTCGACTATTTTACCTTAAAATTGAAAACTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGCATTATGAAGCAAATGAG</pcr_primer_p1>
		<pcr_primer_p2>GTTGACAGGTTTTTGAGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATGCATTATGAAGCAAATGAGGGGTCGAGAAATGGGAAAAATACCATTGAGGCGAAGGTAAGGGGGCGTGGCCGAGGAAAAAATTAGGTCATGGGATACTGAAAATGCAGAATTTTCTGAGGATTATTTTGGTATAAAAATTACTAAAATCGGTTCGGTGGTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAAC</canonical_amplicon>
		<polymorphic_amplicon>TATGCATTATGAAGCAAATGAGGGGTCGAGAAATGGGAAAAATACCATTGAGGCGAAGGTAAGGGGGCGTGGCCGAGGAAAAAATTAGGTCATGGGATACTGAAAATGCAGAATTTTCTGAGGATTATTTTGGTATAAAAATTACTAAAATCGGTTCGGTGGTTCTTGAGAACATTGGAAAGTACAAGRTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32657</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>109411</contig_pos>
        <strand>+</strand>
        <context>AKYTTTTAAT[C/T]TTTAAYCAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATGGTTTTTATACCAAAATGATCCTTGAAAAATGCTGCAGTTTTTAAT</left_flank>
        <right_flank>TTTAACCAATTTTTCCAGAATAATCATTTCACTTCAATTATGGGAAAAGC</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACGAGCACCAACGTGAGGATCGTGATCAATACGTCTCAATTTTATACCAAAATGTGATTCAAGGTAAGAAAGACATCCGAAAAAACAGACAGACAGACAGAAAATGCTTTTTTCAGGTGCCAACACAGATTTTGATAAGCTGAGCAATTTGGGATTATCGTATTACGGAGAACACTATGATTATACATCTATTATGCATTATGAAGCAAATGAGGGGTCGAGAAATGGGAAAAATACCATTGAGGCGAAGGTAAGGGGGCGTGGCCGAGGAAAAAATTAGGTCATGGGATACTGAAAATGCAGAATTTTCTGAGGATTATTTTGGTATAAAAATTACTAAAATCGGTTCGGTGGTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAACCGATTTTTATGGTTTTTATACCAAAATGATCCTTGAAAAATGCTGCAGTTTTTAATTTTTAACCAATTTTTCCAGAATAATCATTTCACTTCAATTATGGGAAAAGCCAACGACTTCTCCACATCCGACCTTCGTCGAGTGAATCGAGCCTATAAATGCTCCATTTTCTAAATTAGTTTTTTTTGGTTAATTGCTAATTATGATACGTGTAATTTATGAGTCATTAATTACCCTGAAGTTTCCCCCGGTGCTTTTTGTTTGTCTGTACATATTGAAACAATGAATTTTTCCCTACTTTTTTGGACATGCATTTTTAAAAGCTAGTTTTCTCAGAGATGACTTGTTTAATCGCAATGATTAATATACCAAAATAATTGTCTTGAAATTCCAGACATTTTAATTCAAAATTCGACTATTTTACCTTAAAATTGAAAACTGAAAATTTGCTCTAAACTTTTAACTCTTTCTTCTGCTGTTCTTTCAATTTTTCTCTAGAACCAGTTGCTCAATTTTTTTGGTTTTTACACTAAAACAAAGGAAATTTGAAGACAAATATT</canonical>
            <polymorphic>TCACGAGCACCAACGTGAGGATCGTGATCAATACGTCTCAATTTTATACCAAAATGTGATTCAAGGTAAGAAAGACATCCGAAAAAACAGACAGACAGACAGAAAATGCTTTTTTCAGGTGCCAACACAGATTTTGATAAGCTGAGCAATTTGGGATTATCGTATTACGGAGAACACTATGATTATACATCTATTATGCATTATGAAGCAAATGAGGGGTCGAGAAATGGGAAAAATACCATTGAGGCGAAGGTAAGGGGGCGTGGCCGAGGAAAAAATTAGGTCATGGGATACTGAAAATGCAGAATTTTCTGAGGATTATTTTGGTATAAAAATTACTAAAATCGGTTCGGTGGTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAACCGATTTTTATGGTTTTTATACCAAAATGATCCTTGAAAAATGCTGCAGTTTTTAATYTTTAACCAATTTTTCCAGAATAATCATTTCACTTCAATTATGGGAAAAGCCAACGACTTCTCCACATCCGACCTTCGTCGAGTGAATCGAGCCTATAAATGCTCCATTTTCTAAATTAGTTTTTTTTGGTTAATTGCTAATTATGATACGTGTAATTTATGAGTCATTAATTACCCTGAAGTTTCCCCCGGTGCTTTTTGTTTGTCTGTACATATTGAAACAATGAATTTTTCCCTACTTTTTTGGACATGCATTTTTAAAAGCTAGTTTTCTCAGAGATGACTTGTTTAATCGCAATGATTAATATACCAAAATAATTGTCTTGAAATTCCAGACATTTTAATTCAAAATTCGACTATTTTACCTTAAAATTGAAAACTGAAAATTTGCTCTAAACTTTTAACTCTTTCTTCTGCTGTTCTTTCAATTTTTCTCTAGAACCAGTTGCTCAATTTTTTTGGTTTTTACACTAAAACAAAGGAAATTTGAAGACAAATATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>129 108 90 78 76 64 57 42 39 32 29 28 28 25 21 18 18 15 15 15 14 12 11 11 11 7 7</canonical_bands>
                <polymorphic_bands>129 108 90 87 78 64 57 42 39 32 29 28 28 25 21 18 18 15 15 15 14 12 11 11 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCTTGAGAACATTGGAAAGTA</pcr_primer_p1>
		<pcr_primer_p2>CATTTATAGGCTCGATTCACTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAACCGATTTTTATGGTTTTTATACCAAAATGATCCTTGAAAAATGCTGCAGTTTTTAATTTTTAACCAATTTTTCCAGAATAATCATTTCACTTCAATTATGGGAAAAGCCAACGACTTCTCCACATCCGACCTTCGTCGAGTGAATCGAGCCTATAAATG</canonical_amplicon>
		<polymorphic_amplicon>GTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAACCGATTTTTATGGTTTTTATACCAAAATGATCCTTGAAAAATGCTGCAGTTTTTAATYTTTAACCAATTTTTCCAGAATAATCATTTCACTTCAATTATGGGAAAAGCCAACGACTTCTCCACATCCGACCTTCGTCGAGTGAATCGAGCCTATAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32658</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>109417</contig_pos>
        <strand>+</strand>
        <context>TAATYTTTAA[C/T]CAATTTTTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTATACCAAAATGATCCTTGAAAAATGCTGCAGTTTTTAATTTTTAA</left_flank>
        <right_flank>CAATTTTTCCAGAATAATCATTTCACTTCAATTATGGGAAAAGCCAACGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCACCAACGTGAGGATCGTGATCAATACGTCTCAATTTTATACCAAAATGTGATTCAAGGTAAGAAAGACATCCGAAAAAACAGACAGACAGACAGAAAATGCTTTTTTCAGGTGCCAACACAGATTTTGATAAGCTGAGCAATTTGGGATTATCGTATTACGGAGAACACTATGATTATACATCTATTATGCATTATGAAGCAAATGAGGGGTCGAGAAATGGGAAAAATACCATTGAGGCGAAGGTAAGGGGGCGTGGCCGAGGAAAAAATTAGGTCATGGGATACTGAAAATGCAGAATTTTCTGAGGATTATTTTGGTATAAAAATTACTAAAATCGGTTCGGTGGTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAACCGATTTTTATGGTTTTTATACCAAAATGATCCTTGAAAAATGCTGCAGTTTTTAATTTTTAACCAATTTTTCCAGAATAATCATTTCACTTCAATTATGGGAAAAGCCAACGACTTCTCCACATCCGACCTTCGTCGAGTGAATCGAGCCTATAAATGCTCCATTTTCTAAATTAGTTTTTTTTGGTTAATTGCTAATTATGATACGTGTAATTTATGAGTCATTAATTACCCTGAAGTTTCCCCCGGTGCTTTTTGTTTGTCTGTACATATTGAAACAATGAATTTTTCCCTACTTTTTTGGACATGCATTTTTAAAAGCTAGTTTTCTCAGAGATGACTTGTTTAATCGCAATGATTAATATACCAAAATAATTGTCTTGAAATTCCAGACATTTTAATTCAAAATTCGACTATTTTACCTTAAAATTGAAAACTGAAAATTTGCTCTAAACTTTTAACTCTTTCTTCTGCTGTTCTTTCAATTTTTCTCTAGAACCAGTTGCTCAATTTTTTTGGTTTTTACACTAAAACAAAGGAAATTTGAAGACAAATATTTTGAAT</canonical>
            <polymorphic>GCACCAACGTGAGGATCGTGATCAATACGTCTCAATTTTATACCAAAATGTGATTCAAGGTAAGAAAGACATCCGAAAAAACAGACAGACAGACAGAAAATGCTTTTTTCAGGTGCCAACACAGATTTTGATAAGCTGAGCAATTTGGGATTATCGTATTACGGAGAACACTATGATTATACATCTATTATGCATTATGAAGCAAATGAGGGGTCGAGAAATGGGAAAAATACCATTGAGGCGAAGGTAAGGGGGCGTGGCCGAGGAAAAAATTAGGTCATGGGATACTGAAAATGCAGAATTTTCTGAGGATTATTTTGGTATAAAAATTACTAAAATCGGTTCGGTGGTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAACCGATTTTTATGGTTTTTATACCAAAATGATCCTTGAAAAATGCTGCAGTTTTTAATTTTTAAYCAATTTTTCCAGAATAATCATTTCACTTCAATTATGGGAAAAGCCAACGACTTCTCCACATCCGACCTTCGTCGAGTGAATCGAGCCTATAAATGCTCCATTTTCTAAATTAGTTTTTTTTGGTTAATTGCTAATTATGATACGTGTAATTTATGAGTCATTAATTACCCTGAAGTTTCCCCCGGTGCTTTTTGTTTGTCTGTACATATTGAAACAATGAATTTTTCCCTACTTTTTTGGACATGCATTTTTAAAAGCTAGTTTTCTCAGAGATGACTTGTTTAATCGCAATGATTAATATACCAAAATAATTGTCTTGAAATTCCAGACATTTTAATTCAAAATTCGACTATTTTACCTTAAAATTGAAAACTGAAAATTTGCTCTAAACTTTTAACTCTTTCTTCTGCTGTTCTTTCAATTTTTCTCTAGAACCAGTTGCTCAATTTTTTTGGTTTTTACACTAAAACAAAGGAAATTTGAAGACAAATATTTTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCTTGAGAACATTGGAAAGTA</pcr_primer_p1>
		<pcr_primer_p2>CATTTATAGGCTCGATTCACTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAACCGATTTTTATGGTTTTTATACCAAAATGATCCTTGAAAAATGCTGCAGTTTTTAATTTTTAACCAATTTTTCCAGAATAATCATTTCACTTCAATTATGGGAAAAGCCAACGACTTCTCCACATCCGACCTTCGTCGAGTGAATCGAGCCTATAAATG</canonical_amplicon>
		<polymorphic_amplicon>GTTCTTGAGAACATTGGAAAGTACAAGTTTTGATTTTTTGAAAATTTTCCAGTAATTTTTTTTTGAATTTTCTCAAAAACCTGTCAACCGATTTTTATGGTTTTTATACCAAAATGATCCTTGAAAAATGCTGCAGTTTTTAATTTTTAAYCAATTTTTCCAGAATAATCATTTCACTTCAATTATGGGAAAAGCCAACGACTTCTCCACATCCGACCTTCGTCGAGTGAATCGAGCCTATAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32659</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>111098</contig_pos>
        <strand></strand>
        <context>gtccgaaatc[A/C]wtgcacgttg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCATTCGAATGGTACCAAAATGATTAGAGTATTACTCTCGTCCGAAATC</left_flank>
        <right_flank>ATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATCGTCGGTCGCACA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGTTGAATTCCCAAATTCCTTCCTTTCCTCCACAAACGTTGCCATCCATCTCCGATCAGCTCCCCCGAAAATCCCTCTCAAGTACTCCGCCCCGTAAATACAATATGTTTCTAAGCTACTCCCGACATTGTGTATCCACGATCCTCAAGAAAAGAGAATCTCTGTGTCTCTCACTCTCTCACATATCTCCAACCTGAAGCTCTCTCTGTGAGCCCCCGTTTTGCCGCCGACGACCCACCAACGGCCACCCATTGATAAAACTTTTTTTGCTTCTTCTACGCAGATTTGTGTGTGTTTTATCAAAGAAAAAATTTGATCTACTTGTTTTTTTTTGTTTTGATCTACCAACTCGTTCGCCATGGCGAATATCGACTATATGATGGATCCGGGATGGAAGTACCTGCGGCAGGCTCAGGATGAGGCTTTGAAGGTTCGTAAAATTCTATGATCATTCGAATGGTACCAAAATGATTAGAGTATTACTCTCGTCCGAAATCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATCGTCGGTCGCACAGCGAAAAAACAAATTGATGCATGCGCCTTTAAATACCGTACGTCGGACGTTTTTTATTTTGGGCCCTATTTGATGTTTTTTCTATTTTACTGTCTGTACAAAAAAACCTCGGCAAGGGGCGGGGCTTACGCGACACGCCCCTTTATGCAACGCGCGCGCACACTTTTTCGGGGATATTTTTCTCGGAATTTTCAGATGTATTTTTTCGCACTTTTTCTCATTGAAATTGAATAAAATTGAGATTTTAATGTAAAATCATTCAGAAAATATCAATATTATCCAGAATTGCTTCAGTGCCTTCATACCTCGACGGCGATGGCTTCCTGGGGTTGTCGGTTGAGGGGGAAAGTTCGTTGTGGTGTGCTACTCATGTTTTCTGACTTTACATTAAAAACTCAATTTTATTCAATTTCAATGAGAAAAAGTGTGAAAAATGACATCTAAAATTCC</canonical>
            <polymorphic>GTTGTTGAATTCCCAAATTCCTTCCTTTCCTCCACAAACGTTGCCATCCATCTCCGATCAGCTCCCCCGAAAATCCCTCTCAAGTACTCCGCCCCGTAAATACAATATGTTTCTAAGCTACTCCCGACATTGTGTATCCACGATCCTCAAGAAAAGAGAATCTCTGTGTCTCTCACTCTCTCACATATCTCCAACCTGAAGCTCTCTCTGTGAGCCCCCGTTTTGCCGCCGACGACCCACCAACGGCCACCCATTGATAAAACTTTTTTTGCTTCTTCTACGCAGATTTGTGTGTGTTTTATCAAAGAAAAAATTTGATCTACTTGTTTTTTTTTGTTTTGATCTACCAACTCGTTCGCCATGGCGAATATCGACTATATGATGGATCCGGGATGGAAGTACCTGCGGCAGGCTCAGGATGAGGCTTTGAAGGTTCGTAAAATTCTATGATCATTCGAATGGTACCAAAATGATTAGAGTATTACTCTCGTCCGAAATCMATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATCGTCGGTCGCACAGCGAAAAAACAAATTGATGCATGCGCCTTTAAATACCGTACGTCGGACGTTTTTTATTTTGGGCCCTATTTGATGTTTTTTCTATTTTACTGTCTGTACAAAAAAACCTCGGCAAGGGGCGGGGCTTACGCGACACGCCCCTTTATGCAACGCGCGCGCACACTTTTTCGGGGATATTTTTCTCGGAATTTTCAGATGTATTTTTTCGCACTTTTTCTCATTGAAATTGAATAAAATTGAGATTTTAATGTAAAATCATTCAGAAAATATCAATATTATCCAGAATTGCTTCAGTGCCTTCATACCTCGACGGCGATGGCTTCCTGGGGTTGTCGGTTGAGGGGGAAAGTTCGTTGTGGTGTGCTACTCATGTTTTCTGACTTTACATTAAAAACTCAATTTTATTCAATTTCAATGAGAAAAAGTGTGAAAAATGACATCTAAAATTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGCGAATATCGACTATATGA</pcr_primer_p1>
		<pcr_primer_p2>CCGCTTAATTTTGGAGCTAT</pcr_primer_p2>
		<pcr_amplicon_size>985</pcr_amplicon_size>
		<canonical_amplicon>TGGCGAATATCGACTATATGATGGATCCGGGATGGAAGTACCTGCGGCAGGCTCAGGATGAGGCTTTGAAGGTTCGTAAAATTCTATGATCATTCGAATGGTACCAAAATGATTAGAGTATTACTCTCGTCCGAAATCAATGCACGTTGCGGCCGAAA</canonical_amplicon>
		<polymorphic_amplicon>TGGCGAATATCGACTATATGATGGATCCGGGATGGAAGTACCTGCGGCAGGCTCAGGATGAGGCTTTGAAGGTTCGTAAAATTCTATGATCATTCGAATGGTACCAAAATGATTAGAGTATTACTCTCGTCCGAAATCMATGCACGTTGCGGCCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32660</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>111099</contig_pos>
        <strand></strand>
        <context>tccgaaatcm[A/T]tgcacgttgc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCATTCGAATGGTACCAAAATGATTAGAGTATTACTCTCGTCCGAAATCA</left_flank>
        <right_flank>TGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATCGTCGGTCGCACAG</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTGAATTCCCAAATTCCTTCCTTTCCTCCACAAACGTTGCCATCCATCTCCGATCAGCTCCCCCGAAAATCCCTCTCAAGTACTCCGCCCCGTAAATACAATATGTTTCTAAGCTACTCCCGACATTGTGTATCCACGATCCTCAAGAAAAGAGAATCTCTGTGTCTCTCACTCTCTCACATATCTCCAACCTGAAGCTCTCTCTGTGAGCCCCCGTTTTGCCGCCGACGACCCACCAACGGCCACCCATTGATAAAACTTTTTTTGCTTCTTCTACGCAGATTTGTGTGTGTTTTATCAAAGAAAAAATTTGATCTACTTGTTTTTTTTTGTTTTGATCTACCAACTCGTTCGCCATGGCGAATATCGACTATATGATGGATCCGGGATGGAAGTACCTGCGGCAGGCTCAGGATGAGGCTTTGAAGGTTCGTAAAATTCTATGATCATTCGAATGGTACCAAAATGATTAGAGTATTACTCTCGTCCGAAATCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATCGTCGGTCGCACAGCGAAAAAACAAATTGATGCATGCGCCTTTAAATACCGTACGTCGGACGTTTTTTATTTTGGGCCCTATTTGATGTTTTTTCTATTTTACTGTCTGTACAAAAAAACCTCGGCAAGGGGCGGGGCTTACGCGACACGCCCCTTTATGCAACGCGCGCGCACACTTTTTCGGGGATATTTTTCTCGGAATTTTCAGATGTATTTTTTCGCACTTTTTCTCATTGAAATTGAATAAAATTGAGATTTTAATGTAAAATCATTCAGAAAATATCAATATTATCCAGAATTGCTTCAGTGCCTTCATACCTCGACGGCGATGGCTTCCTGGGGTTGTCGGTTGAGGGGGAAAGTTCGTTGTGGTGTGCTACTCATGTTTTCTGACTTTACATTAAAAACTCAATTTTATTCAATTTCAATGAGAAAAAGTGTGAAAAATGACATCTAAAATTCCG</canonical>
            <polymorphic>TTGTTGAATTCCCAAATTCCTTCCTTTCCTCCACAAACGTTGCCATCCATCTCCGATCAGCTCCCCCGAAAATCCCTCTCAAGTACTCCGCCCCGTAAATACAATATGTTTCTAAGCTACTCCCGACATTGTGTATCCACGATCCTCAAGAAAAGAGAATCTCTGTGTCTCTCACTCTCTCACATATCTCCAACCTGAAGCTCTCTCTGTGAGCCCCCGTTTTGCCGCCGACGACCCACCAACGGCCACCCATTGATAAAACTTTTTTTGCTTCTTCTACGCAGATTTGTGTGTGTTTTATCAAAGAAAAAATTTGATCTACTTGTTTTTTTTTGTTTTGATCTACCAACTCGTTCGCCATGGCGAATATCGACTATATGATGGATCCGGGATGGAAGTACCTGCGGCAGGCTCAGGATGAGGCTTTGAAGGTTCGTAAAATTCTATGATCATTCGAATGGTACCAAAATGATTAGAGTATTACTCTCGTCCGAAATCAWTGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATCGTCGGTCGCACAGCGAAAAAACAAATTGATGCATGCGCCTTTAAATACCGTACGTCGGACGTTTTTTATTTTGGGCCCTATTTGATGTTTTTTCTATTTTACTGTCTGTACAAAAAAACCTCGGCAAGGGGCGGGGCTTACGCGACACGCCCCTTTATGCAACGCGCGCGCACACTTTTTCGGGGATATTTTTCTCGGAATTTTCAGATGTATTTTTTCGCACTTTTTCTCATTGAAATTGAATAAAATTGAGATTTTAATGTAAAATCATTCAGAAAATATCAATATTATCCAGAATTGCTTCAGTGCCTTCATACCTCGACGGCGATGGCTTCCTGGGGTTGTCGGTTGAGGGGGAAAGTTCGTTGTGGTGTGCTACTCATGTTTTCTGACTTTACATTAAAAACTCAATTTTATTCAATTTCAATGAGAAAAAGTGTGAAAAATGACATCTAAAATTCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGCGAATATCGACTATATGA</pcr_primer_p1>
		<pcr_primer_p2>CCGCTTAATTTTGGAGCTAT</pcr_primer_p2>
		<pcr_amplicon_size>985</pcr_amplicon_size>
		<canonical_amplicon>TGGCGAATATCGACTATATGATGGATCCGGGATGGAAGTACCTGCGGCAGGCTCAGGATGAGGCTTTGAAGGTTCGTAAAATTCTATGATCATTCGAATGGTACCAAAATGATTAGAGTATTACTCTCGTCCGAAATCAATGCACGTTGCGGCCGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGGCGAATATCGACTATATGATGGATCCGGGATGGAAGTACCTGCGGCAGGCTCAGGATGAGGCTTTGAAGGTTCGTAAAATTCTATGATCATTCGAATGGTACCAAAATGATTAGAGTATTACTCTCGTCCGAAATCAWTGCACGTTGCGGCCGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32661</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>111122</contig_pos>
        <strand></strand>
        <context>ccgaaaattt[A/G]ctcaaaatcg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAGAGTATTACTCTCGTCCGAAATCAATGCACGTTGCGGCCGAAAATTT</left_flank>
        <right_flank>CTCAAAATCGCATCGTCGGTCGCACAGCGAAAAAACAAATTGATGCATGC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTCCTCCACAAACGTTGCCATCCATCTCCGATCAGCTCCCCCGAAAATCCCTCTCAAGTACTCCGCCCCGTAAATACAATATGTTTCTAAGCTACTCCCGACATTGTGTATCCACGATCCTCAAGAAAAGAGAATCTCTGTGTCTCTCACTCTCTCACATATCTCCAACCTGAAGCTCTCTCTGTGAGCCCCCGTTTTGCCGCCGACGACCCACCAACGGCCACCCATTGATAAAACTTTTTTTGCTTCTTCTACGCAGATTTGTGTGTGTTTTATCAAAGAAAAAATTTGATCTACTTGTTTTTTTTTGTTTTGATCTACCAACTCGTTCGCCATGGCGAATATCGACTATATGATGGATCCGGGATGGAAGTACCTGCGGCAGGCTCAGGATGAGGCTTTGAAGGTTCGTAAAATTCTATGATCATTCGAATGGTACCAAAATGATTAGAGTATTACTCTCGTCCGAAATCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATCGTCGGTCGCACAGCGAAAAAACAAATTGATGCATGCGCCTTTAAATACCGTACGTCGGACGTTTTTTATTTTGGGCCCTATTTGATGTTTTTTCTATTTTACTGTCTGTACAAAAAAACCTCGGCAAGGGGCGGGGCTTACGCGACACGCCCCTTTATGCAACGCGCGCGCACACTTTTTCGGGGATATTTTTCTCGGAATTTTCAGATGTATTTTTTCGCACTTTTTCTCATTGAAATTGAATAAAATTGAGATTTTAATGTAAAATCATTCAGAAAATATCAATATTATCCAGAATTGCTTCAGTGCCTTCATACCTCGACGGCGATGGCTTCCTGGGGTTGTCGGTTGAGGGGGAAAGTTCGTTGTGGTGTGCTACTCATGTTTTCTGACTTTACATTAAAAACTCAATTTTATTCAATTTCAATGAGAAAAAGTGTGAAAAATGACATCTAAAATTCCGGAAAAAATATCCCCGAAAAGGGT</canonical>
            <polymorphic>CTTTCCTCCACAAACGTTGCCATCCATCTCCGATCAGCTCCCCCGAAAATCCCTCTCAAGTACTCCGCCCCGTAAATACAATATGTTTCTAAGCTACTCCCGACATTGTGTATCCACGATCCTCAAGAAAAGAGAATCTCTGTGTCTCTCACTCTCTCACATATCTCCAACCTGAAGCTCTCTCTGTGAGCCCCCGTTTTGCCGCCGACGACCCACCAACGGCCACCCATTGATAAAACTTTTTTTGCTTCTTCTACGCAGATTTGTGTGTGTTTTATCAAAGAAAAAATTTGATCTACTTGTTTTTTTTTGTTTTGATCTACCAACTCGTTCGCCATGGCGAATATCGACTATATGATGGATCCGGGATGGAAGTACCTGCGGCAGGCTCAGGATGAGGCTTTGAAGGTTCGTAAAATTCTATGATCATTCGAATGGTACCAAAATGATTAGAGTATTACTCTCGTCCGAAATCAATGCACGTTGCGGCCGAAAATTTRCTCAAAATCGCATCGTCGGTCGCACAGCGAAAAAACAAATTGATGCATGCGCCTTTAAATACCGTACGTCGGACGTTTTTTATTTTGGGCCCTATTTGATGTTTTTTCTATTTTACTGTCTGTACAAAAAAACCTCGGCAAGGGGCGGGGCTTACGCGACACGCCCCTTTATGCAACGCGCGCGCACACTTTTTCGGGGATATTTTTCTCGGAATTTTCAGATGTATTTTTTCGCACTTTTTCTCATTGAAATTGAATAAAATTGAGATTTTAATGTAAAATCATTCAGAAAATATCAATATTATCCAGAATTGCTTCAGTGCCTTCATACCTCGACGGCGATGGCTTCCTGGGGTTGTCGGTTGAGGGGGAAAGTTCGTTGTGGTGTGCTACTCATGTTTTCTGACTTTACATTAAAAACTCAATTTTATTCAATTTCAATGAGAAAAAGTGTGAAAAATGACATCTAAAATTCCGGAAAAAATATCCCCGAAAAGGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATGGTACCAAAATGATTAGAG</pcr_primer_p1>
		<pcr_primer_p2>ACCGTAATCCGCTTAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>898</pcr_amplicon_size>
		<canonical_amplicon>GAATGGTACCAAAATGATTAGAGTATTACTCTCGTCCGAAATCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATCGTCGG</canonical_amplicon>
		<polymorphic_amplicon>GAATGGTACCAAAATGATTAGAGTATTACTCTCGTCCGAAATCAATGCACGTTGCGGCCGAAAATTTRCTCAAAATCGCATCGTCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32662</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>111137</contig_pos>
        <strand></strand>
        <context>aaatcgcatc[G/T]tcggtcgcac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGTCCGAAATCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATC</left_flank>
        <right_flank>TCGGTCGCACAGCGAAAAAACAAATTGATGCATGCGCCTTTAAATACCGT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTGCCATCCATCTCCGATCAGCTCCCCCGAAAATCCCTCTCAAGTACTCCGCCCCGTAAATACAATATGTTTCTAAGCTACTCCCGACATTGTGTATCCACGATCCTCAAGAAAAGAGAATCTCTGTGTCTCTCACTCTCTCACATATCTCCAACCTGAAGCTCTCTCTGTGAGCCCCCGTTTTGCCGCCGACGACCCACCAACGGCCACCCATTGATAAAACTTTTTTTGCTTCTTCTACGCAGATTTGTGTGTGTTTTATCAAAGAAAAAATTTGATCTACTTGTTTTTTTTTGTTTTGATCTACCAACTCGTTCGCCATGGCGAATATCGACTATATGATGGATCCGGGATGGAAGTACCTGCGGCAGGCTCAGGATGAGGCTTTGAAGGTTCGTAAAATTCTATGATCATTCGAATGGTACCAAAATGATTAGAGTATTACTCTCGTCCGAAATCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATCGTCGGTCGCACAGCGAAAAAACAAATTGATGCATGCGCCTTTAAATACCGTACGTCGGACGTTTTTTATTTTGGGCCCTATTTGATGTTTTTTCTATTTTACTGTCTGTACAAAAAAACCTCGGCAAGGGGCGGGGCTTACGCGACACGCCCCTTTATGCAACGCGCGCGCACACTTTTTCGGGGATATTTTTCTCGGAATTTTCAGATGTATTTTTTCGCACTTTTTCTCATTGAAATTGAATAAAATTGAGATTTTAATGTAAAATCATTCAGAAAATATCAATATTATCCAGAATTGCTTCAGTGCCTTCATACCTCGACGGCGATGGCTTCCTGGGGTTGTCGGTTGAGGGGGAAAGTTCGTTGTGGTGTGCTACTCATGTTTTCTGACTTTACATTAAAAACTCAATTTTATTCAATTTCAATGAGAAAAAGTGTGAAAAATGACATCTAAAATTCCGGAAAAAATATCCCCGAAAAGGGTGAGCCACTGTTGCAA</canonical>
            <polymorphic>GTTGCCATCCATCTCCGATCAGCTCCCCCGAAAATCCCTCTCAAGTACTCCGCCCCGTAAATACAATATGTTTCTAAGCTACTCCCGACATTGTGTATCCACGATCCTCAAGAAAAGAGAATCTCTGTGTCTCTCACTCTCTCACATATCTCCAACCTGAAGCTCTCTCTGTGAGCCCCCGTTTTGCCGCCGACGACCCACCAACGGCCACCCATTGATAAAACTTTTTTTGCTTCTTCTACGCAGATTTGTGTGTGTTTTATCAAAGAAAAAATTTGATCTACTTGTTTTTTTTTGTTTTGATCTACCAACTCGTTCGCCATGGCGAATATCGACTATATGATGGATCCGGGATGGAAGTACCTGCGGCAGGCTCAGGATGAGGCTTTGAAGGTTCGTAAAATTCTATGATCATTCGAATGGTACCAAAATGATTAGAGTATTACTCTCGTCCGAAATCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATCKTCGGTCGCACAGCGAAAAAACAAATTGATGCATGCGCCTTTAAATACCGTACGTCGGACGTTTTTTATTTTGGGCCCTATTTGATGTTTTTTCTATTTTACTGTCTGTACAAAAAAACCTCGGCAAGGGGCGGGGCTTACGCGACACGCCCCTTTATGCAACGCGCGCGCACACTTTTTCGGGGATATTTTTCTCGGAATTTTCAGATGTATTTTTTCGCACTTTTTCTCATTGAAATTGAATAAAATTGAGATTTTAATGTAAAATCATTCAGAAAATATCAATATTATCCAGAATTGCTTCAGTGCCTTCATACCTCGACGGCGATGGCTTCCTGGGGTTGTCGGTTGAGGGGGAAAGTTCGTTGTGGTGTGCTACTCATGTTTTCTGACTTTACATTAAAAACTCAATTTTATTCAATTTCAATGAGAAAAAGTGTGAAAAATGACATCTAAAATTCCGGAAAAAATATCCCCGAAAAGGGTGAGCCACTGTTGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>308 267 195 177 53</canonical_bands>
                <polymorphic_bands>361 267 195 177</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATGGTACCAAAATGATTAGAG</pcr_primer_p1>
		<pcr_primer_p2>ACCGTAATCCGCTTAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>898</pcr_amplicon_size>
		<canonical_amplicon>GAATGGTACCAAAATGATTAGAGTATTACTCTCGTCCGAAATCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATCGTCGGTCGCACAGCGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAATGGTACCAAAATGATTAGAGTATTACTCTCGTCCGAAATCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATCKTCGGTCGCACAGCGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32663</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>111149</contig_pos>
        <strand></strand>
        <context>cggtcgcaca[G/A]cgaaaaaaca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATCGTCGGTCGCACA</left_flank>
        <right_flank>CGAAAAAACAAATTGATGCATGCGCCTTTAAATACCGTACGTCGGACGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCGATCAGCTCCCCCGAAAATCCCTCTCAAGTACTCCGCCCCGTAAATACAATATGTTTCTAAGCTACTCCCGACATTGTGTATCCACGATCCTCAAGAAAAGAGAATCTCTGTGTCTCTCACTCTCTCACATATCTCCAACCTGAAGCTCTCTCTGTGAGCCCCCGTTTTGCCGCCGACGACCCACCAACGGCCACCCATTGATAAAACTTTTTTTGCTTCTTCTACGCAGATTTGTGTGTGTTTTATCAAAGAAAAAATTTGATCTACTTGTTTTTTTTTGTTTTGATCTACCAACTCGTTCGCCATGGCGAATATCGACTATATGATGGATCCGGGATGGAAGTACCTGCGGCAGGCTCAGGATGAGGCTTTGAAGGTTCGTAAAATTCTATGATCATTCGAATGGTACCAAAATGATTAGAGTATTACTCTCGTCCGAAATCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATCGTCGGTCGCACAGCGAAAAAACAAATTGATGCATGCGCCTTTAAATACCGTACGTCGGACGTTTTTTATTTTGGGCCCTATTTGATGTTTTTTCTATTTTACTGTCTGTACAAAAAAACCTCGGCAAGGGGCGGGGCTTACGCGACACGCCCCTTTATGCAACGCGCGCGCACACTTTTTCGGGGATATTTTTCTCGGAATTTTCAGATGTATTTTTTCGCACTTTTTCTCATTGAAATTGAATAAAATTGAGATTTTAATGTAAAATCATTCAGAAAATATCAATATTATCCAGAATTGCTTCAGTGCCTTCATACCTCGACGGCGATGGCTTCCTGGGGTTGTCGGTTGAGGGGGAAAGTTCGTTGTGGTGTGCTACTCATGTTTTCTGACTTTACATTAAAAACTCAATTTTATTCAATTTCAATGAGAAAAAGTGTGAAAAATGACATCTAAAATTCCGGAAAAAATATCCCCGAAAAGGGTGAGCCACTGTTGCAAAAAGGGGCGTAT</canonical>
            <polymorphic>CTCCGATCAGCTCCCCCGAAAATCCCTCTCAAGTACTCCGCCCCGTAAATACAATATGTTTCTAAGCTACTCCCGACATTGTGTATCCACGATCCTCAAGAAAAGAGAATCTCTGTGTCTCTCACTCTCTCACATATCTCCAACCTGAAGCTCTCTCTGTGAGCCCCCGTTTTGCCGCCGACGACCCACCAACGGCCACCCATTGATAAAACTTTTTTTGCTTCTTCTACGCAGATTTGTGTGTGTTTTATCAAAGAAAAAATTTGATCTACTTGTTTTTTTTTGTTTTGATCTACCAACTCGTTCGCCATGGCGAATATCGACTATATGATGGATCCGGGATGGAAGTACCTGCGGCAGGCTCAGGATGAGGCTTTGAAGGTTCGTAAAATTCTATGATCATTCGAATGGTACCAAAATGATTAGAGTATTACTCTCGTCCGAAATCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATCGTCGGTCGCACARCGAAAAAACAAATTGATGCATGCGCCTTTAAATACCGTACGTCGGACGTTTTTTATTTTGGGCCCTATTTGATGTTTTTTCTATTTTACTGTCTGTACAAAAAAACCTCGGCAAGGGGCGGGGCTTACGCGACACGCCCCTTTATGCAACGCGCGCGCACACTTTTTCGGGGATATTTTTCTCGGAATTTTCAGATGTATTTTTTCGCACTTTTTCTCATTGAAATTGAATAAAATTGAGATTTTAATGTAAAATCATTCAGAAAATATCAATATTATCCAGAATTGCTTCAGTGCCTTCATACCTCGACGGCGATGGCTTCCTGGGGTTGTCGGTTGAGGGGGAAAGTTCGTTGTGGTGTGCTACTCATGTTTTCTGACTTTACATTAAAAACTCAATTTTATTCAATTTCAATGAGAAAAAGTGTGAAAAATGACATCTAAAATTCCGGAAAAAATATCCCCGAAAAGGGTGAGCCACTGTTGCAAAAAGGGGCGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATGGTACCAAAATGATTAGAG</pcr_primer_p1>
		<pcr_primer_p2>ACCGTAATCCGCTTAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>898</pcr_amplicon_size>
		<canonical_amplicon>GAATGGTACCAAAATGATTAGAGTATTACTCTCGTCCGAAATCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATCGTCGGTCGCACAGCGAAAAAACAAATTGATGC</canonical_amplicon>
		<polymorphic_amplicon>GAATGGTACCAAAATGATTAGAGTATTACTCTCGTCCGAAATCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATCGTCGGTCGCACARCGAAAAAACAAATTGATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32664</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>111190</contig_pos>
        <strand></strand>
        <context>aataccgtac[G/C]tcggacgttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GGTCGCACAGCGAAAAAACAAATTGATGCATGCGCCTTTAAATACCGTAC</left_flank>
        <right_flank>TCGGACGTTTTTTATTTTGGGCCCTATTTGATGTTTTTTCTATTTTACTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCGTAAATACAATATGTTTCTAAGCTACTCCCGACATTGTGTATCCACGATCCTCAAGAAAAGAGAATCTCTGTGTCTCTCACTCTCTCACATATCTCCAACCTGAAGCTCTCTCTGTGAGCCCCCGTTTTGCCGCCGACGACCCACCAACGGCCACCCATTGATAAAACTTTTTTTGCTTCTTCTACGCAGATTTGTGTGTGTTTTATCAAAGAAAAAATTTGATCTACTTGTTTTTTTTTGTTTTGATCTACCAACTCGTTCGCCATGGCGAATATCGACTATATGATGGATCCGGGATGGAAGTACCTGCGGCAGGCTCAGGATGAGGCTTTGAAGGTTCGTAAAATTCTATGATCATTCGAATGGTACCAAAATGATTAGAGTATTACTCTCGTCCGAAATCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATCGTCGGTCGCACAGCGAAAAAACAAATTGATGCATGCGCCTTTAAATACCGTACGTCGGACGTTTTTTATTTTGGGCCCTATTTGATGTTTTTTCTATTTTACTGTCTGTACAAAAAAACCTCGGCAAGGGGCGGGGCTTACGCGACACGCCCCTTTATGCAACGCGCGCGCACACTTTTTCGGGGATATTTTTCTCGGAATTTTCAGATGTATTTTTTCGCACTTTTTCTCATTGAAATTGAATAAAATTGAGATTTTAATGTAAAATCATTCAGAAAATATCAATATTATCCAGAATTGCTTCAGTGCCTTCATACCTCGACGGCGATGGCTTCCTGGGGTTGTCGGTTGAGGGGGAAAGTTCGTTGTGGTGTGCTACTCATGTTTTCTGACTTTACATTAAAAACTCAATTTTATTCAATTTCAATGAGAAAAAGTGTGAAAAATGACATCTAAAATTCCGGAAAAAATATCCCCGAAAAGGGTGAGCCACTGTTGCAAAAAGGGGCGTATCAGGAACGCCCCATTTTCCGGCTGCGGCGCGCCCACGTTTT</canonical>
            <polymorphic>CCCGTAAATACAATATGTTTCTAAGCTACTCCCGACATTGTGTATCCACGATCCTCAAGAAAAGAGAATCTCTGTGTCTCTCACTCTCTCACATATCTCCAACCTGAAGCTCTCTCTGTGAGCCCCCGTTTTGCCGCCGACGACCCACCAACGGCCACCCATTGATAAAACTTTTTTTGCTTCTTCTACGCAGATTTGTGTGTGTTTTATCAAAGAAAAAATTTGATCTACTTGTTTTTTTTTGTTTTGATCTACCAACTCGTTCGCCATGGCGAATATCGACTATATGATGGATCCGGGATGGAAGTACCTGCGGCAGGCTCAGGATGAGGCTTTGAAGGTTCGTAAAATTCTATGATCATTCGAATGGTACCAAAATGATTAGAGTATTACTCTCGTCCGAAATCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATCGTCGGTCGCACAGCGAAAAAACAAATTGATGCATGCGCCTTTAAATACCGTACSTCGGACGTTTTTTATTTTGGGCCCTATTTGATGTTTTTTCTATTTTACTGTCTGTACAAAAAAACCTCGGCAAGGGGCGGGGCTTACGCGACACGCCCCTTTATGCAACGCGCGCGCACACTTTTTCGGGGATATTTTTCTCGGAATTTTCAGATGTATTTTTTCGCACTTTTTCTCATTGAAATTGAATAAAATTGAGATTTTAATGTAAAATCATTCAGAAAATATCAATATTATCCAGAATTGCTTCAGTGCCTTCATACCTCGACGGCGATGGCTTCCTGGGGTTGTCGGTTGAGGGGGAAAGTTCGTTGTGGTGTGCTACTCATGTTTTCTGACTTTACATTAAAAACTCAATTTTATTCAATTTCAATGAGAAAAAGTGTGAAAAATGACATCTAAAATTCCGGAAAAAATATCCCCGAAAAGGGTGAGCCACTGTTGCAAAAAGGGGCGTATCAGGAACGCCCCATTTTCCGGCTGCGGCGCGCCCACGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGTACG</site>
                <isoschizomers>
                    <enzyme>BsiWI</enzyme>
                    <enzyme>Pfl23II</enzyme>
                    <enzyme>PspLI</enzyme>
                    <enzyme>SplI</enzyme>
                    <enzyme>SunI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>308 267 230 142 53</canonical_bands>
                <polymorphic_bands>320 308 230 142</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>489 413 85 7 6</canonical_bands>
                <polymorphic_bands>489 413 92 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATGGTACCAAAATGATTAGAG</pcr_primer_p1>
		<pcr_primer_p2>ACCGTAATCCGCTTAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>898</pcr_amplicon_size>
		<canonical_amplicon>GAATGGTACCAAAATGATTAGAGTATTACTCTCGTCCGAAATCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATCGTCGGTCGCACAGCGAAAAAACAAATTGATGCATGCGCCTTTAAATACCGTACGTCGGACGTTTTTTATTTTG</canonical_amplicon>
		<polymorphic_amplicon>GAATGGTACCAAAATGATTAGAGTATTACTCTCGTCCGAAATCAATGCACGTTGCGGCCGAAAATTTACTCAAAATCGCATCGTCGGTCGCACAGCGAAAAAACAAATTGATGCATGCGCCTTTAAATACCGTACSTCGGACGTTTTTTATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32665</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>194610</contig_pos>
        <strand></strand>
        <context>catgattata[G/C]tcatttyaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GTAGCTCAAAGCTCAAAAAGTCATTTCGATGAAAATAGGTCATGATTATA</left_flank>
        <right_flank>TCATTTTAAAGCTGAAAACGCGCCAAATTTAAAAATCTAGGTTTCATAAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGGACAGGAGTTGGAGCGGCGAATGGGATTCTTATCAAGGGTGGAGAACCATTGGAGAGTGTTCATAAGGTTTGTACGGATCTGGAAACGTGGACATCGGAACATCTGGGCACACAGACGGACACTAAGCGGGCCTTGAACGGGCTCATGGCGGCTCTAAAACAGATGGGATCATAACTTCCTTCAGATGCTATGTTCTTGAACTAGCTAAATTAAACATGATAGAAAAACTCAAAAGCTACAAAATTATCTTGTTTGGAGTACTGTATCTTGTCTATGAGCAAAGTTACAAGCTAAAAACCGACTGAGATACACAGTCATAGTCAAGCTCAGATGGTTTTTGGTTTGTAACTTTGGCCACAGACAAGCTACAGTATCCCAAACTCTTAAGTTTTGCTATCGTACCCATAGTAGTAGCTCTGAAAATATTGATCCTGAAGGAAGCTACGTAGCTCAAAGCTCAAAAAGTCATTTCGATGAAAATAGGTCATGATTATAGTCATTTTAAAGCTGAAAACGCGCCAAATTTAAAAATCTAGGTTTCATAAAAATTGAATGAAAACTGACTGATATACAGTTAAAATCCTTATCACTTTCTCTTTTTTTTGCAGGTCACCACTATCGTATTCGACAAGACGGGCACCATCACCGAGGGACGTCCACGTGTAATACAAATTGCCTCATTTGTGAATCCTCAGTCGCTATCACTGAAACTGATAACATTCTTATCAGGAGCCACTGAAGCGTTATCCGAGCACCCGATTGGAAATGCGATTGCGGCGTTTGCCAAACAGGTACTGTAGATAGGTTACTGTAGGTTTCGATTTTTTTCCGATTTGGATTACTGTTGTTTTGGAACCTTAGGTTTTTGGATTACTGTAGTTTACTATTAGCAATTTTCCAAATTTCGAAAAATTAATTTTTTGAAAAGTTGGATTTCTGAAAATTCATTCGATTTTTTCAAGTTTTGGATTACTGTAGATTACTGTAGATTTCTGA</canonical>
            <polymorphic>GGGGACAGGAGTTGGAGCGGCGAATGGGATTCTTATCAAGGGTGGAGAACCATTGGAGAGTGTTCATAAGGTTTGTACGGATCTGGAAACGTGGACATCGGAACATCTGGGCACACAGACGGACACTAAGCGGGCCTTGAACGGGCTCATGGCGGCTCTAAAACAGATGGGATCATAACTTCCTTCAGATGCTATGTTCTTGAACTAGCTAAATTAAACATGATAGAAAAACTCAAAAGCTACAAAATTATCTTGTTTGGAGTACTGTATCTTGTCTATGAGCAAAGTTACAAGCTAAAAACCGACTGAGATACACAGTCATAGTCAAGCTCAGATGGTTTTTGGTTTGTAACTTTGGCCACAGACAAGCTACAGTATCCCAAACTCTTAAGTTTTGCTATCGTACCCATAGTAGTAGCTCTGAAAATATTGATCCTGAAGGAAGCTACGTAGCTCAAAGCTCAAAAAGTCATTTCGATGAAAATAGGTCATGATTATASTCATTTTAAAGCTGAAAACGCGCCAAATTTAAAAATCTAGGTTTCATAAAAATTGAATGAAAACTGACTGATATACAGTTAAAATCCTTATCACTTTCTCTTTTTTTTGCAGGTCACCACTATCGTATTCGACAAGACGGGCACCATCACCGAGGGACGTCCACGTGTAATACAAATTGCCTCATTTGTGAATCCTCAGTCGCTATCACTGAAACTGATAACATTCTTATCAGGAGCCACTGAAGCGTTATCCGAGCACCCGATTGGAAATGCGATTGCGGCGTTTGCCAAACAGGTACTGTAGATAGGTTACTGTAGGTTTCGATTTTTTTCCGATTTGGATTACTGTTGTTTTGGAACCTTAGGTTTTTGGATTACTGTAGTTTACTATTAGCAATTTTCCAAATTTCGAAAAATTAATTTTTTGAAAAGTTGGATTTCTGAAAATTCATTCGATTTTTTCAAGTTTTGGATTACTGTAGATTACTGTAGATTTCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTGTACGGATCTGGAAAC</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGAGAAAGTGATAAGGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>535</pcr_amplicon_size>
		<canonical_amplicon>GTTTGTACGGATCTGGAAACGTGGACATCGGAACATCTGGGCACACAGACGGACACTAAGCGGGCCTTGAACGGGCTCATGGCGGCTCTAAAACAGATGGGATCATAACTTCCTTCAGATGCTATGTTCTTGAACTAGCTAAATTAAACATGATAGAAAAACTCAAAAGCTACAAAATTATCTTGTTTGGAGTACTGTATCTTGTCTATGAGCAAAGTTACAAGCTAAAAACCGACTGAGATACACAGTCATAGTCAAGCTCAGATGGTTTTTGGTTTGTAACTTTGGCCACAGACAAGCTACAGTATCCCAAACTCTTAAGTTTTGCTATCGTACCCATAGTAGTAGCTCTGAAAATATTGATCCTGAAGGAAGCTACGTAGCTCAAAGCTCAAAAAGTCATTTCGATGAAAATAGGTCATGATTATAGTCATTTTAAAGCTGAAAACGCGCCAAATTTAAAAATCTAGGTTTCATAAAAATTGAATGAAAACTGACTGATATACAGTTAAAATCCTTATCACTTTCTCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GTTTGTACGGATCTGGAAACGTGGACATCGGAACATCTGGGCACACAGACGGACACTAAGCGGGCCTTGAACGGGCTCATGGCGGCTCTAAAACAGATGGGATCATAACTTCCTTCAGATGCTATGTTCTTGAACTAGCTAAATTAAACATGATAGAAAAACTCAAAAGCTACAAAATTATCTTGTTTGGAGTACTGTATCTTGTCTATGAGCAAAGTTACAAGCTAAAAACCGACTGAGATACACAGTCATAGTCAAGCTCAGATGGTTTTTGGTTTGTAACTTTGGCCACAGACAAGCTACAGTATCCCAAACTCTTAAGTTTTGCTATCGTACCCATAGTAGTAGCTCTGAAAATATTGATCCTGAAGGAAGCTACGTAGCTCAAAGCTCAAAAAGTCATTTCGATGAAAATAGGTCATGATTATASTCATTTTAAAGCTGAAAACGCGCCAAATTTAAAAATCTAGGTTTCATAAAAATTGAATGAAAACTGACTGATATACAGTTAAAATCCTTATCACTTTCTCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32666</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>194617</contig_pos>
        <strand></strand>
        <context>atastcattt[T/C]aaagctgaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAGCTCAAAAAGTCATTTCGATGAAAATAGGTCATGATTATAGTCATTT</left_flank>
        <right_flank>AAAGCTGAAAACGCGCCAAATTTAAAAATCTAGGTTTCATAAAAATTGAA</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGTTGGAGCGGCGAATGGGATTCTTATCAAGGGTGGAGAACCATTGGAGAGTGTTCATAAGGTTTGTACGGATCTGGAAACGTGGACATCGGAACATCTGGGCACACAGACGGACACTAAGCGGGCCTTGAACGGGCTCATGGCGGCTCTAAAACAGATGGGATCATAACTTCCTTCAGATGCTATGTTCTTGAACTAGCTAAATTAAACATGATAGAAAAACTCAAAAGCTACAAAATTATCTTGTTTGGAGTACTGTATCTTGTCTATGAGCAAAGTTACAAGCTAAAAACCGACTGAGATACACAGTCATAGTCAAGCTCAGATGGTTTTTGGTTTGTAACTTTGGCCACAGACAAGCTACAGTATCCCAAACTCTTAAGTTTTGCTATCGTACCCATAGTAGTAGCTCTGAAAATATTGATCCTGAAGGAAGCTACGTAGCTCAAAGCTCAAAAAGTCATTTCGATGAAAATAGGTCATGATTATAGTCATTTTAAAGCTGAAAACGCGCCAAATTTAAAAATCTAGGTTTCATAAAAATTGAATGAAAACTGACTGATATACAGTTAAAATCCTTATCACTTTCTCTTTTTTTTGCAGGTCACCACTATCGTATTCGACAAGACGGGCACCATCACCGAGGGACGTCCACGTGTAATACAAATTGCCTCATTTGTGAATCCTCAGTCGCTATCACTGAAACTGATAACATTCTTATCAGGAGCCACTGAAGCGTTATCCGAGCACCCGATTGGAAATGCGATTGCGGCGTTTGCCAAACAGGTACTGTAGATAGGTTACTGTAGGTTTCGATTTTTTTCCGATTTGGATTACTGTTGTTTTGGAACCTTAGGTTTTTGGATTACTGTAGTTTACTATTAGCAATTTTCCAAATTTCGAAAAATTAATTTTTTGAAAAGTTGGATTTCTGAAAATTCATTCGATTTTTTCAAGTTTTGGATTACTGTAGATTACTGTAGATTTCTGAATTTTCC</canonical>
            <polymorphic>GGAGTTGGAGCGGCGAATGGGATTCTTATCAAGGGTGGAGAACCATTGGAGAGTGTTCATAAGGTTTGTACGGATCTGGAAACGTGGACATCGGAACATCTGGGCACACAGACGGACACTAAGCGGGCCTTGAACGGGCTCATGGCGGCTCTAAAACAGATGGGATCATAACTTCCTTCAGATGCTATGTTCTTGAACTAGCTAAATTAAACATGATAGAAAAACTCAAAAGCTACAAAATTATCTTGTTTGGAGTACTGTATCTTGTCTATGAGCAAAGTTACAAGCTAAAAACCGACTGAGATACACAGTCATAGTCAAGCTCAGATGGTTTTTGGTTTGTAACTTTGGCCACAGACAAGCTACAGTATCCCAAACTCTTAAGTTTTGCTATCGTACCCATAGTAGTAGCTCTGAAAATATTGATCCTGAAGGAAGCTACGTAGCTCAAAGCTCAAAAAGTCATTTCGATGAAAATAGGTCATGATTATAGTCATTTYAAAGCTGAAAACGCGCCAAATTTAAAAATCTAGGTTTCATAAAAATTGAATGAAAACTGACTGATATACAGTTAAAATCCTTATCACTTTCTCTTTTTTTTGCAGGTCACCACTATCGTATTCGACAAGACGGGCACCATCACCGAGGGACGTCCACGTGTAATACAAATTGCCTCATTTGTGAATCCTCAGTCGCTATCACTGAAACTGATAACATTCTTATCAGGAGCCACTGAAGCGTTATCCGAGCACCCGATTGGAAATGCGATTGCGGCGTTTGCCAAACAGGTACTGTAGATAGGTTACTGTAGGTTTCGATTTTTTTCCGATTTGGATTACTGTTGTTTTGGAACCTTAGGTTTTTGGATTACTGTAGTTTACTATTAGCAATTTTCCAAATTTCGAAAAATTAATTTTTTGAAAAGTTGGATTTCTGAAAATTCATTCGATTTTTTCAAGTTTTGGATTACTGTAGATTACTGTAGATTTCTGAATTTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 477 23</canonical_bands>
                <polymorphic_bands>523 477</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>338 207 174 118 90 50 23</canonical_bands>
                <polymorphic_bands>338 207 174 141 90 50</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTGTACGGATCTGGAAAC</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGAGAAAGTGATAAGGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>535</pcr_amplicon_size>
		<canonical_amplicon>GTTTGTACGGATCTGGAAACGTGGACATCGGAACATCTGGGCACACAGACGGACACTAAGCGGGCCTTGAACGGGCTCATGGCGGCTCTAAAACAGATGGGATCATAACTTCCTTCAGATGCTATGTTCTTGAACTAGCTAAATTAAACATGATAGAAAAACTCAAAAGCTACAAAATTATCTTGTTTGGAGTACTGTATCTTGTCTATGAGCAAAGTTACAAGCTAAAAACCGACTGAGATACACAGTCATAGTCAAGCTCAGATGGTTTTTGGTTTGTAACTTTGGCCACAGACAAGCTACAGTATCCCAAACTCTTAAGTTTTGCTATCGTACCCATAGTAGTAGCTCTGAAAATATTGATCCTGAAGGAAGCTACGTAGCTCAAAGCTCAAAAAGTCATTTCGATGAAAATAGGTCATGATTATAGTCATTTTAAAGCTGAAAACGCGCCAAATTTAAAAATCTAGGTTTCATAAAAATTGAATGAAAACTGACTGATATACAGTTAAAATCCTTATCACTTTCTCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GTTTGTACGGATCTGGAAACGTGGACATCGGAACATCTGGGCACACAGACGGACACTAAGCGGGCCTTGAACGGGCTCATGGCGGCTCTAAAACAGATGGGATCATAACTTCCTTCAGATGCTATGTTCTTGAACTAGCTAAATTAAACATGATAGAAAAACTCAAAAGCTACAAAATTATCTTGTTTGGAGTACTGTATCTTGTCTATGAGCAAAGTTACAAGCTAAAAACCGACTGAGATACACAGTCATAGTCAAGCTCAGATGGTTTTTGGTTTGTAACTTTGGCCACAGACAAGCTACAGTATCCCAAACTCTTAAGTTTTGCTATCGTACCCATAGTAGTAGCTCTGAAAATATTGATCCTGAAGGAAGCTACGTAGCTCAAAGCTCAAAAAGTCATTTCGATGAAAATAGGTCATGATTATAGTCATTTYAAAGCTGAAAACGCGCCAAATTTAAAAATCTAGGTTTCATAAAAATTGAATGAAAACTGACTGATATACAGTTAAAATCCTTATCACTTTCTCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32667</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>194651</contig_pos>
        <strand></strand>
        <context>aaaaatctag[G/A]tttcataaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATGATTATAGTCATTTTAAAGCTGAAAACGCGCCAAATTTAAAAATCTAG</left_flank>
        <right_flank>TTTCATAAAAATTGAATGAAAACTGACTGATATACAGTTAAAATCCTTAT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGAGAACCATTGGAGAGTGTTCATAAGGTTTGTACGGATCTGGAAACGTGGACATCGGAACATCTGGGCACACAGACGGACACTAAGCGGGCCTTGAACGGGCTCATGGCGGCTCTAAAACAGATGGGATCATAACTTCCTTCAGATGCTATGTTCTTGAACTAGCTAAATTAAACATGATAGAAAAACTCAAAAGCTACAAAATTATCTTGTTTGGAGTACTGTATCTTGTCTATGAGCAAAGTTACAAGCTAAAAACCGACTGAGATACACAGTCATAGTCAAGCTCAGATGGTTTTTGGTTTGTAACTTTGGCCACAGACAAGCTACAGTATCCCAAACTCTTAAGTTTTGCTATCGTACCCATAGTAGTAGCTCTGAAAATATTGATCCTGAAGGAAGCTACGTAGCTCAAAGCTCAAAAAGTCATTTCGATGAAAATAGGTCATGATTATAGTCATTTTAAAGCTGAAAACGCGCCAAATTTAAAAATCTAGGTTTCATAAAAATTGAATGAAAACTGACTGATATACAGTTAAAATCCTTATCACTTTCTCTTTTTTTTGCAGGTCACCACTATCGTATTCGACAAGACGGGCACCATCACCGAGGGACGTCCACGTGTAATACAAATTGCCTCATTTGTGAATCCTCAGTCGCTATCACTGAAACTGATAACATTCTTATCAGGAGCCACTGAAGCGTTATCCGAGCACCCGATTGGAAATGCGATTGCGGCGTTTGCCAAACAGGTACTGTAGATAGGTTACTGTAGGTTTCGATTTTTTTCCGATTTGGATTACTGTTGTTTTGGAACCTTAGGTTTTTGGATTACTGTAGTTTACTATTAGCAATTTTCCAAATTTCGAAAAATTAATTTTTTGAAAAGTTGGATTTCTGAAAATTCATTCGATTTTTTCAAGTTTTGGATTACTGTAGATTACTGTAGATTTCTGAATTTTCCAGCTCCTCAACGAGCCCACCTGGCCGAACACTTC</canonical>
            <polymorphic>GTGGAGAACCATTGGAGAGTGTTCATAAGGTTTGTACGGATCTGGAAACGTGGACATCGGAACATCTGGGCACACAGACGGACACTAAGCGGGCCTTGAACGGGCTCATGGCGGCTCTAAAACAGATGGGATCATAACTTCCTTCAGATGCTATGTTCTTGAACTAGCTAAATTAAACATGATAGAAAAACTCAAAAGCTACAAAATTATCTTGTTTGGAGTACTGTATCTTGTCTATGAGCAAAGTTACAAGCTAAAAACCGACTGAGATACACAGTCATAGTCAAGCTCAGATGGTTTTTGGTTTGTAACTTTGGCCACAGACAAGCTACAGTATCCCAAACTCTTAAGTTTTGCTATCGTACCCATAGTAGTAGCTCTGAAAATATTGATCCTGAAGGAAGCTACGTAGCTCAAAGCTCAAAAAGTCATTTCGATGAAAATAGGTCATGATTATAGTCATTTTAAAGCTGAAAACGCGCCAAATTTAAAAATCTAGRTTTCATAAAAATTGAATGAAAACTGACTGATATACAGTTAAAATCCTTATCACTTTCTCTTTTTTTTGCAGGTCACCACTATCGTATTCGACAAGACGGGCACCATCACCGAGGGACGTCCACGTGTAATACAAATTGCCTCATTTGTGAATCCTCAGTCGCTATCACTGAAACTGATAACATTCTTATCAGGAGCCACTGAAGCGTTATCCGAGCACCCGATTGGAAATGCGATTGCGGCGTTTGCCAAACAGGTACTGTAGATAGGTTACTGTAGGTTTCGATTTTTTTCCGATTTGGATTACTGTTGTTTTGGAACCTTAGGTTTTTGGATTACTGTAGTTTACTATTAGCAATTTTCCAAATTTCGAAAAATTAATTTTTTGAAAAGTTGGATTTCTGAAAATTCATTCGATTTTTTCAAGTTTTGGATTACTGTAGATTACTGTAGATTTCTGAATTTTCCAGCTCCTCAACGAGCCCACCTGGCCGAACACTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTGTACGGATCTGGAAAC</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGAGAAAGTGATAAGGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>535</pcr_amplicon_size>
		<canonical_amplicon>GTTTGTACGGATCTGGAAACGTGGACATCGGAACATCTGGGCACACAGACGGACACTAAGCGGGCCTTGAACGGGCTCATGGCGGCTCTAAAACAGATGGGATCATAACTTCCTTCAGATGCTATGTTCTTGAACTAGCTAAATTAAACATGATAGAAAAACTCAAAAGCTACAAAATTATCTTGTTTGGAGTACTGTATCTTGTCTATGAGCAAAGTTACAAGCTAAAAACCGACTGAGATACACAGTCATAGTCAAGCTCAGATGGTTTTTGGTTTGTAACTTTGGCCACAGACAAGCTACAGTATCCCAAACTCTTAAGTTTTGCTATCGTACCCATAGTAGTAGCTCTGAAAATATTGATCCTGAAGGAAGCTACGTAGCTCAAAGCTCAAAAAGTCATTTCGATGAAAATAGGTCATGATTATAGTCATTTTAAAGCTGAAAACGCGCCAAATTTAAAAATCTAGGTTTCATAAAAATTGAATGAAAACTGACTGATATACAGTTAAAATCCTTATCACTTTCTCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GTTTGTACGGATCTGGAAACGTGGACATCGGAACATCTGGGCACACAGACGGACACTAAGCGGGCCTTGAACGGGCTCATGGCGGCTCTAAAACAGATGGGATCATAACTTCCTTCAGATGCTATGTTCTTGAACTAGCTAAATTAAACATGATAGAAAAACTCAAAAGCTACAAAATTATCTTGTTTGGAGTACTGTATCTTGTCTATGAGCAAAGTTACAAGCTAAAAACCGACTGAGATACACAGTCATAGTCAAGCTCAGATGGTTTTTGGTTTGTAACTTTGGCCACAGACAAGCTACAGTATCCCAAACTCTTAAGTTTTGCTATCGTACCCATAGTAGTAGCTCTGAAAATATTGATCCTGAAGGAAGCTACGTAGCTCAAAGCTCAAAAAGTCATTTCGATGAAAATAGGTCATGATTATAGTCATTTTAAAGCTGAAAACGCGCCAAATTTAAAAATCTAGRTTTCATAAAAATTGAATGAAAACTGACTGATATACAGTTAAAATCCTTATCACTTTCTCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32668</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>195551</contig_pos>
        <strand>+</strand>
        <context>GAATGATGGA[A/G]AGACATGGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGAATCCCGACACCGCCGCCATCGTAATTGGAACGGAACGAATGATGGA</left_flank>
        <right_flank>AGACATGGGATTCCAGTCACGGATACTGTCAAAATGACACTTTCCGATGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAATTCATTCGATTTTTTCAAGTTTTGGATTACTGTAGATTACTGTAGATTTCTGAATTTTCCAGCTCCTCAACGAGCCCACCTGGCCGAACACTTCTCGATTCCACGTCTCGGCCGGCCATGGAGTAACATGTCGAATCGATTCGATTCGTCAATCATTCGCATCGCTAGCTTTATCTGGAACGACGTCTTCTGAATTCCCACGTCTTCTGGATGGACAGACGATGACGATTCCAGGAACAGAAGTCACATTACTGCAGGTTTCTAGCAAGGATGGTAAGGCACTTTTATCTTTGAACCAGTTTATCTGGGTTACTGTAAGAGATAACGAAATGTTTTTAACTGATAAAATGTTACTGATAATATGTTGAACATTTTATCAGTTGGCCACTTTTGAGTATCTCCTACAGTAACCGAGATAATTGACCCTAATTACAGTAACCCAACCGAATCCCGACACCGCCGCCATCGTAATTGGAACGGAACGAATGATGGAGAGACATGGGATTCCAGTCACGGATACTGTCAAAATGACACTTTCCGATGAGCAACGAAAAGGACACATCTCGGTGATTTGTGCAATTAATGGTAATTATCCCTAATTACCCCCAATTAACTCAACTTATTACAGCGGAAGTAGTCGCTGTGATTTCAATTGCGGACCAAGTGAAAAAAGAGGCTTCTCTGGCAATTTATACGCTACGTGAGATGGGTTTGGGAGTGGTTCTGCTAACTGGAGATAACTCGAAAACCGCAGAATCCACTGCCAAACAAGTGGGAATTGATGAGGTTTATGCGGAGGTAAGGAGCAATATTTCTGAACCAAATACAGTGGATATGATAGAAGAACTCAAGAGCTACAAAATGAGCCTATTTGGGATGATGGAGCTTGTCTATGAGCAATGTTACAGGCTGAAAGCTACGCGCTCATATCTCAAAACTATTGTTTCAATCGGAACTCTGTCAATTTTGATCCAATTTGCTTGAAATATGGATG</canonical>
            <polymorphic>TGAAAATTCATTCGATTTTTTCAAGTTTTGGATTACTGTAGATTACTGTAGATTTCTGAATTTTCCAGCTCCTCAACGAGCCCACCTGGCCGAACACTTCTCGATTCCACGTCTCGGCCGGCCATGGAGTAACATGTCGAATCGATTCGATTCGTCAATCATTCGCATCGCTAGCTTTATCTGGAACGACGTCTTCTGAATTCCCACGTCTTCTGGATGGACAGACGATGACGATTCCAGGAACAGAAGTCACATTACTGCAGGTTTCTAGCAAGGATGGTAAGGCACTTTTATCTTTGAACCAGTTTATCTGGGTTACTGTAAGAGATAACGAAATGTTTTTAACTGATAAAATGTTACTGATAATATGTTGAACATTTTATCAGTTGGCCACTTTTGAGTATCTCCTACAGTAACCGAGATAATTGACCCTAATTACAGTAACCCAACCGAATCCCGACACCGCCGCCATCGTAATTGGAACGGAACGAATGATGGARAGACATGGGATTCCAGTCACGGATACTGTCAAAATGACACTTTCCGATGAGCAACGAAAAGGACACATCTCGGTGATTTGTGCAATTAATGGTAATTATCCCTAATTACCCCCAATTAACTCAACTTATTACAGCGGAAGTAGTCGCTGTGATTTCAATTGCGGACCAAGTGAAAAAAGAGGCTTCTCTGGCAATTTATACGCTACGTGAGATGGGTTTGGGAGTGGTTCTGCTAACTGGAGATAACTCGAAAACCGCAGAATCCACTGCCAAACAAGTGGGAATTGATGAGGTTTATGCGGAGGTAAGGAGCAATATTTCTGAACCAAATACAGTGGATATGATAGAAGAACTCAAGAGCTACAAAATGAGCCTATTTGGGATGATGGAGCTTGTCTATGAGCAATGTTACAGGCTGAAAGCTACGCGCTCATATCTCAAAACTATTGTTTCAATCGGAACTCTGTCAATTTTGATCCAATTTGCTTGAAATATGGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTAGCAAGGATGGTAAGG</pcr_primer_p1>
		<pcr_primer_p2>TACCATTAATTGCACAAATCAC</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>TTTCTAGCAAGGATGGTAAGGCACTTTTATCTTTGAACCAGTTTATCTGGGTTACTGTAAGAGATAACGAAATGTTTTTAACTGATAAAATGTTACTGATAATATGTTGAACATTTTATCAGTTGGCCACTTTTGAGTATCTCCTACAGTAACCGAGATAATTGACCCTAATTACAGTAACCCAACCGAATCCCGACACCGCCGCCATCGTAATTGGAACGGAACGAATGATGGAGAGACATGGGATTCCAGTCACGGATACTGTCAAAATGACACTTTCCGATGAGCAACGAAAAGGACACATCTCGGTGATTTGTGCAATTAATGGTA</canonical_amplicon>
		<polymorphic_amplicon>TTTCTAGCAAGGATGGTAAGGCACTTTTATCTTTGAACCAGTTTATCTGGGTTACTGTAAGAGATAACGAAATGTTTTTAACTGATAAAATGTTACTGATAATATGTTGAACATTTTATCAGTTGGCCACTTTTGAGTATCTCCTACAGTAACCGAGATAATTGACCCTAATTACAGTAACCCAACCGAATCCCGACACCGCCGCCATCGTAATTGGAACGGAACGAATGATGGARAGACATGGGATTCCAGTCACGGATACTGTCAAAATGACACTTTCCGATGAGCAACGAAAAGGACACATCTCGGTGATTTGTGCAATTAATGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32669</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>195940</contig_pos>
        <strand></strand>
        <context>tgggatgatg[G/T]agctygtcta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATATGATAGAAGAACTCAAGAGCTACAAAATGAGCCTATTTGGGATGATG</left_flank>
        <right_flank>AGCTTGTCTATGAGCAATGTTACAGGCTGAAAGCTACGCGCTCATATCTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCACTTTTGAGTATCTCCTACAGTAACCGAGATAATTGACCCTAATTACAGTAACCCAACCGAATCCCGACACCGCCGCCATCGTAATTGGAACGGAACGAATGATGGAGAGACATGGGATTCCAGTCACGGATACTGTCAAAATGACACTTTCCGATGAGCAACGAAAAGGACACATCTCGGTGATTTGTGCAATTAATGGTAATTATCCCTAATTACCCCCAATTAACTCAACTTATTACAGCGGAAGTAGTCGCTGTGATTTCAATTGCGGACCAAGTGAAAAAAGAGGCTTCTCTGGCAATTTATACGCTACGTGAGATGGGTTTGGGAGTGGTTCTGCTAACTGGAGATAACTCGAAAACCGCAGAATCCACTGCCAAACAAGTGGGAATTGATGAGGTTTATGCGGAGGTAAGGAGCAATATTTCTGAACCAAATACAGTGGATATGATAGAAGAACTCAAGAGCTACAAAATGAGCCTATTTGGGATGATGGAGCTTGTCTATGAGCAATGTTACAGGCTGAAAGCTACGCGCTCATATCTCAAAACTATTGTTTCAATCGGAACTCTGTCAATTTTGATCCAATTTGCTTGAAATATGGATGGATGAATTCGGTGTGTTTTGAGCTTTCAAATGAGTATAATCATGACCTATTTTGTCATGAAAAAGTTTTTGAGCTCTGGGATCGCTTGTAAAAAATGTTTTTTCGCCTATAACTCGGTGAATTTTGGACCAATTCTCATGAAACTTTGATTTTCAAACTTTCCCGTTACGAGCTTTCAAATGAGTATAATCATCAACTATTCTTAGCGAAAATGTTTTTGAGCTACGGGACCACGCTCAAAAAATAATTTTTCGAAAATAGGTCATGATAGTACTTATTTGAAAGCTCGAAACGCGACAATTTCAGAAATATAGATTTCATACAAATCGAGCTAAAACTCGCCGAGTTATGAGCTAAACAAAATTTTTACTAGCGATCGCGTAGGTCAA</canonical>
            <polymorphic>GCCACTTTTGAGTATCTCCTACAGTAACCGAGATAATTGACCCTAATTACAGTAACCCAACCGAATCCCGACACCGCCGCCATCGTAATTGGAACGGAACGAATGATGGAGAGACATGGGATTCCAGTCACGGATACTGTCAAAATGACACTTTCCGATGAGCAACGAAAAGGACACATCTCGGTGATTTGTGCAATTAATGGTAATTATCCCTAATTACCCCCAATTAACTCAACTTATTACAGCGGAAGTAGTCGCTGTGATTTCAATTGCGGACCAAGTGAAAAAAGAGGCTTCTCTGGCAATTTATACGCTACGTGAGATGGGTTTGGGAGTGGTTCTGCTAACTGGAGATAACTCGAAAACCGCAGAATCCACTGCCAAACAAGTGGGAATTGATGAGGTTTATGCGGAGGTAAGGAGCAATATTTCTGAACCAAATACAGTGGATATGATAGAAGAACTCAAGAGCTACAAAATGAGCCTATTTGGGATGATGKAGCTTGTCTATGAGCAATGTTACAGGCTGAAAGCTACGCGCTCATATCTCAAAACTATTGTTTCAATCGGAACTCTGTCAATTTTGATCCAATTTGCTTGAAATATGGATGGATGAATTCGGTGTGTTTTGAGCTTTCAAATGAGTATAATCATGACCTATTTTGTCATGAAAAAGTTTTTGAGCTCTGGGATCGCTTGTAAAAAATGTTTTTTCGCCTATAACTCGGTGAATTTTGGACCAATTCTCATGAAACTTTGATTTTCAAACTTTCCCGTTACGAGCTTTCAAATGAGTATAATCATCAACTATTCTTAGCGAAAATGTTTTTGAGCTACGGGACCACGCTCAAAAAATAATTTTTCGAAAATAGGTCATGATAGTACTTATTTGAAAGCTCGAAACGCGACAATTTCAGAAATATAGATTTCATACAAATCGAGCTAAAACTCGCCGAGTTATGAGCTAAACAAAATTTTTACTAGCGATCGCGTAGGTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGGAATTGATGAGGTTTAT</pcr_primer_p1>
		<pcr_primer_p2>CTGGTAAAAATTTTGTTTAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>722</pcr_amplicon_size>
		<canonical_amplicon>GTGGGAATTGATGAGGTTTATGCGGAGGTAAGGAGCAATATTTCTGAACCAAATACAGTGGATATGATAGAAGAACTCAAGAGCTACAAAATGAGCCTATTTGGGATGATGGAGCTTGTCTATGAGCAATGTTA</canonical_amplicon>
		<polymorphic_amplicon>GTGGGAATTGATGAGGTTTATGCGGAGGTAAGGAGCAATATTTCTGAACCAAATACAGTGGATATGATAGAAGAACTCAAGAGCTACAAAATGAGCCTATTTGGGATGATGKAGCTTGTCTATGAGCAATGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32670</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>195945</contig_pos>
        <strand></strand>
        <context>tgatgkagct[T/C]gtctatgagc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATAGAAGAACTCAAGAGCTACAAAATGAGCCTATTTGGGATGATGGAGCT</left_flank>
        <right_flank>GTCTATGAGCAATGTTACAGGCTGAAAGCTACGCGCTCATATCTCAAAAC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGAGTATCTCCTACAGTAACCGAGATAATTGACCCTAATTACAGTAACCCAACCGAATCCCGACACCGCCGCCATCGTAATTGGAACGGAACGAATGATGGAGAGACATGGGATTCCAGTCACGGATACTGTCAAAATGACACTTTCCGATGAGCAACGAAAAGGACACATCTCGGTGATTTGTGCAATTAATGGTAATTATCCCTAATTACCCCCAATTAACTCAACTTATTACAGCGGAAGTAGTCGCTGTGATTTCAATTGCGGACCAAGTGAAAAAAGAGGCTTCTCTGGCAATTTATACGCTACGTGAGATGGGTTTGGGAGTGGTTCTGCTAACTGGAGATAACTCGAAAACCGCAGAATCCACTGCCAAACAAGTGGGAATTGATGAGGTTTATGCGGAGGTAAGGAGCAATATTTCTGAACCAAATACAGTGGATATGATAGAAGAACTCAAGAGCTACAAAATGAGCCTATTTGGGATGATGGAGCTTGTCTATGAGCAATGTTACAGGCTGAAAGCTACGCGCTCATATCTCAAAACTATTGTTTCAATCGGAACTCTGTCAATTTTGATCCAATTTGCTTGAAATATGGATGGATGAATTCGGTGTGTTTTGAGCTTTCAAATGAGTATAATCATGACCTATTTTGTCATGAAAAAGTTTTTGAGCTCTGGGATCGCTTGTAAAAAATGTTTTTTCGCCTATAACTCGGTGAATTTTGGACCAATTCTCATGAAACTTTGATTTTCAAACTTTCCCGTTACGAGCTTTCAAATGAGTATAATCATCAACTATTCTTAGCGAAAATGTTTTTGAGCTACGGGACCACGCTCAAAAAATAATTTTTCGAAAATAGGTCATGATAGTACTTATTTGAAAGCTCGAAACGCGACAATTTCAGAAATATAGATTTCATACAAATCGAGCTAAAACTCGCCGAGTTATGAGCTAAACAAAATTTTTACTAGCGATCGCGTAGGTCAAAAATG</canonical>
            <polymorphic>TTTTGAGTATCTCCTACAGTAACCGAGATAATTGACCCTAATTACAGTAACCCAACCGAATCCCGACACCGCCGCCATCGTAATTGGAACGGAACGAATGATGGAGAGACATGGGATTCCAGTCACGGATACTGTCAAAATGACACTTTCCGATGAGCAACGAAAAGGACACATCTCGGTGATTTGTGCAATTAATGGTAATTATCCCTAATTACCCCCAATTAACTCAACTTATTACAGCGGAAGTAGTCGCTGTGATTTCAATTGCGGACCAAGTGAAAAAAGAGGCTTCTCTGGCAATTTATACGCTACGTGAGATGGGTTTGGGAGTGGTTCTGCTAACTGGAGATAACTCGAAAACCGCAGAATCCACTGCCAAACAAGTGGGAATTGATGAGGTTTATGCGGAGGTAAGGAGCAATATTTCTGAACCAAATACAGTGGATATGATAGAAGAACTCAAGAGCTACAAAATGAGCCTATTTGGGATGATGGAGCTYGTCTATGAGCAATGTTACAGGCTGAAAGCTACGCGCTCATATCTCAAAACTATTGTTTCAATCGGAACTCTGTCAATTTTGATCCAATTTGCTTGAAATATGGATGGATGAATTCGGTGTGTTTTGAGCTTTCAAATGAGTATAATCATGACCTATTTTGTCATGAAAAAGTTTTTGAGCTCTGGGATCGCTTGTAAAAAATGTTTTTTCGCCTATAACTCGGTGAATTTTGGACCAATTCTCATGAAACTTTGATTTTCAAACTTTCCCGTTACGAGCTTTCAAATGAGTATAATCATCAACTATTCTTAGCGAAAATGTTTTTGAGCTACGGGACCACGCTCAAAAAATAATTTTTCGAAAATAGGTCATGATAGTACTTATTTGAAAGCTCGAAACGCGACAATTTCAGAAATATAGATTTCATACAAATCGAGCTAAAACTCGCCGAGTTATGAGCTAAACAAAATTTTTACTAGCGATCGCGTAGGTCAAAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGGAATTGATGAGGTTTAT</pcr_primer_p1>
		<pcr_primer_p2>CTGGTAAAAATTTTGTTTAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>722</pcr_amplicon_size>
		<canonical_amplicon>GTGGGAATTGATGAGGTTTATGCGGAGGTAAGGAGCAATATTTCTGAACCAAATACAGTGGATATGATAGAAGAACTCAAGAGCTACAAAATGAGCCTATTTGGGATGATGGAGCTTGTCTATGAGCAATGTTACAGGC</canonical_amplicon>
		<polymorphic_amplicon>GTGGGAATTGATGAGGTTTATGCGGAGGTAAGGAGCAATATTTCTGAACCAAATACAGTGGATATGATAGAAGAACTCAAGAGCTACAAAATGAGCCTATTTGGGATGATGGAGCTYGTCTATGAGCAATGTTACAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32671</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>196047</contig_pos>
        <strand></strand>
        <context>cttgaaatat[G/A]gatggatgaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTGTTTCAATCGGAACTCTGTCAATTTTGATCCAATTTGCTTGAAATAT</left_flank>
        <right_flank>GATGGATGAATTCGGTGTGTTTTGAGCTTTCAAATGAGTATAATCATGAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGAGACATGGGATTCCAGTCACGGATACTGTCAAAATGACACTTTCCGATGAGCAACGAAAAGGACACATCTCGGTGATTTGTGCAATTAATGGTAATTATCCCTAATTACCCCCAATTAACTCAACTTATTACAGCGGAAGTAGTCGCTGTGATTTCAATTGCGGACCAAGTGAAAAAAGAGGCTTCTCTGGCAATTTATACGCTACGTGAGATGGGTTTGGGAGTGGTTCTGCTAACTGGAGATAACTCGAAAACCGCAGAATCCACTGCCAAACAAGTGGGAATTGATGAGGTTTATGCGGAGGTAAGGAGCAATATTTCTGAACCAAATACAGTGGATATGATAGAAGAACTCAAGAGCTACAAAATGAGCCTATTTGGGATGATGGAGCTTGTCTATGAGCAATGTTACAGGCTGAAAGCTACGCGCTCATATCTCAAAACTATTGTTTCAATCGGAACTCTGTCAATTTTGATCCAATTTGCTTGAAATATGGATGGATGAATTCGGTGTGTTTTGAGCTTTCAAATGAGTATAATCATGACCTATTTTGTCATGAAAAAGTTTTTGAGCTCTGGGATCGCTTGTAAAAAATGTTTTTTCGCCTATAACTCGGTGAATTTTGGACCAATTCTCATGAAACTTTGATTTTCAAACTTTCCCGTTACGAGCTTTCAAATGAGTATAATCATCAACTATTCTTAGCGAAAATGTTTTTGAGCTACGGGACCACGCTCAAAAAATAATTTTTCGAAAATAGGTCATGATAGTACTTATTTGAAAGCTCGAAACGCGACAATTTCAGAAATATAGATTTCATACAAATCGAGCTAAAACTCGCCGAGTTATGAGCTAAACAAAATTTTTACTAGCGATCGCGTAGGTCAAAAATGTTTTGAGACAAAACGAGGTCATGATTACACTCATTTGAAAGCTTGAAACGCGCCAAATTCAAAACTCAACTCGCCGAGTCATGAGCTAAACAAAATTTTTAC</canonical>
            <polymorphic>GGAGAGACATGGGATTCCAGTCACGGATACTGTCAAAATGACACTTTCCGATGAGCAACGAAAAGGACACATCTCGGTGATTTGTGCAATTAATGGTAATTATCCCTAATTACCCCCAATTAACTCAACTTATTACAGCGGAAGTAGTCGCTGTGATTTCAATTGCGGACCAAGTGAAAAAAGAGGCTTCTCTGGCAATTTATACGCTACGTGAGATGGGTTTGGGAGTGGTTCTGCTAACTGGAGATAACTCGAAAACCGCAGAATCCACTGCCAAACAAGTGGGAATTGATGAGGTTTATGCGGAGGTAAGGAGCAATATTTCTGAACCAAATACAGTGGATATGATAGAAGAACTCAAGAGCTACAAAATGAGCCTATTTGGGATGATGGAGCTTGTCTATGAGCAATGTTACAGGCTGAAAGCTACGCGCTCATATCTCAAAACTATTGTTTCAATCGGAACTCTGTCAATTTTGATCCAATTTGCTTGAAATATRGATGGATGAATTCGGTGTGTTTTGAGCTTTCAAATGAGTATAATCATGACCTATTTTGTCATGAAAAAGTTTTTGAGCTCTGGGATCGCTTGTAAAAAATGTTTTTTCGCCTATAACTCGGTGAATTTTGGACCAATTCTCATGAAACTTTGATTTTCAAACTTTCCCGTTACGAGCTTTCAAATGAGTATAATCATCAACTATTCTTAGCGAAAATGTTTTTGAGCTACGGGACCACGCTCAAAAAATAATTTTTCGAAAATAGGTCATGATAGTACTTATTTGAAAGCTCGAAACGCGACAATTTCAGAAATATAGATTTCATACAAATCGAGCTAAAACTCGCCGAGTTATGAGCTAAACAAAATTTTTACTAGCGATCGCGTAGGTCAAAAATGTTTTGAGACAAAACGAGGTCATGATTACACTCATTTGAAAGCTTGAAACGCGCCAAATTCAAAACTCAACTCGCCGAGTCATGAGCTAAACAAAATTTTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGCTCATATCTCAAAACTATT</pcr_primer_p1>
		<pcr_primer_p2>CTGGTAAAAATTTTGTTTAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>573</pcr_amplicon_size>
		<canonical_amplicon>GCGCTCATATCTCAAAACTATTGTTTCAATCGGAACTCTGTCAATTTTGATCCAATTTGCTTGAAATATGGATGGATGAATTCGGTGTGTTT</canonical_amplicon>
		<polymorphic_amplicon>GCGCTCATATCTCAAAACTATTGTTTCAATCGGAACTCTGTCAATTTTGATCCAATTTGCTTGAAATATRGATGGATGAATTCGGTGTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32672</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>206273</contig_pos>
        <strand></strand>
        <context>TCCAGAAAAA[A/G]AGCGAAGCCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTTTAACTCATTTTCTGTCATTTTCAACCGAAAATTCTTCCAGAAAAA</left_flank>
        <right_flank>AGCGAAGCCGAGAGGAAATCGGAGGATCACAACGAGAACAACATGTCCGA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTAGGGCTCCCAGAATCTCAAAAATCACGAAAATTTGCAGATCAAGATATGTGTGTCACGAAAAAGAAACAGAAGGATGTTCGTTCGACACGTATCATTGGCCAACCGCCGAATCCGCCCGGTGGTGGTCCTCCGATGATGGCCTCCTCGTTCACACCGGCCGCCACGGCCACGCCGGCCACGCGGTCCGCGACCGCTCAGTCCGCGGACAAGCGACACAGCAAATCGAAGAAAATGTCGAAAGAGGTGAATTTTTAGTGCTTTGTATGGCACTTCATATGCTCTATTACCTATTTTGCCTCTTTTTAAGCCAAAAAAAAAAAACGCTCTATATGGCACTATATATGGGATATATGCTCTATGACATAATTCGGCCATTTTTTCTCATTTTTGAATGATTTTTAGCCAAAAATGACTCTTTTTTGGTCTATTATATGCTCTATGGCGTATTTTAACTCATTTTCTGTCATTTTCAACCGAAAATTCTTCCAGAAAAAAAGCGAAGCCGAGAGGAAATCGGAGGATCACAACGAGAACAACATGTCCGAACTGAAGAAGCTCGCCGAACGAGCGATTAGCATGGGAAAGGGACCGCCGGTGGTGCCACCGGTCAAGCGGTAAGAAATCTCGGGGATTTTGGCTGGAAATGACTGGAAAACCCCATTTCTGACCCCCCAAAAATCGGCTAAAAATGACCGATTTCTGACCTAATTTCGGACCCAGTTTGGCGATTTTCGAGCTGATTCAGACCTAATTAACCTTTTCAGGCCGAAATTGGACGAATTTCAGGCCATTTGACCTATTTTCGAGCTCATTCTAACCTCTTACTAACGAGAAACCCTTATTTCCAGCGACGCGAAACGCATCCCGGACGGTTTCAAATCGCCCAAAGATAAGCAATACATTACACTAGAGGAGGCGGTTCCGATGTTCGAAAAAGCGCGTCTCAAAGGATTCAACGATGATGAGAAGACGTTGAAGGTAGAAGCCACGCAACC</canonical>
            <polymorphic>TTCTAGGGCTCCCAGAATCTCAAAAATCACGAAAATTTGCAGATCAAGATATGTGTGTCACGAAAAAGAAACAGAAGGATGTTCGTTCGACACGTATCATTGGCCAACCGCCGAATCCGCCCGGTGGTGGTCCTCCGATGATGGCCTCCTCGTTCACACCGGCCGCCACGGCCACGCCGGCCACGCGGTCCGCGACCGCTCAGTCCGCGGACAAGCGACACAGCAAATCGAAGAAAATGTCGAAAGAGGTGAATTTTTAGTGCTTTGTATGGCACTTCATATGCTCTATTACCTATTTTGCCTCTTTTTAAGCCAAAAAAAAAAAACGCTCTATATGGCACTATATATGGGATATATGCTCTATGACATAATTCGGCCATTTTTTCTCATTTTTGAATGATTTTTAGCCAAAAATGACTCTTTTTTGGTCTATTATATGCTCTATGGCGTATTTTAACTCATTTTCTGTCATTTTCAACCGAAAATTCTTCCAGAAAAARAGCGAAGCCGAGAGGAAATCGGAGGATCACAACGAGAACAACATGTCCGAACTGAAGAAGCTCGCCGAACGAGCGATTAGCATGGGAAAGGGACCGCCGGTGGTGCCACCGGTCAAGCGGTAAGAAATCTCGGGGATTTTGGCTGGAAATGACTGGAAAACCCCATTTCTGACCCCCCAAAAATCGGCTAAAAATGACCGATTTCTGACCTAATTTCGGACCCAGTTTGGCGATTTTCGAGCTGATTCAGACCTAATTAACCTTTTCAGGCCGAAATTGGACGAATTTCAGGCCATTTGACCTATTTTCGAGCTCATTCTAACCTCTTACTAACGAGAAACCCTTATTTCCAGCGACGCGAAACGCATCCCGGACGGTTTCAAATCGCCCAAAGATAAGCAATACATTACACTAGAGGAGGCGGTTCCGATGTTCGAAAAAGCGCGTCTCAAAGGATTCAACGATGATGAGAAGACGTTGAAGGTAGAAGCCACGCAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGTATTTTAACTCATTTTCTGT</pcr_primer_p1>
		<pcr_primer_p2>TCATTTTTAGCCGATTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCGTATTTTAACTCATTTTCTGTCATTTTCAACCGAAAATTCTTCCAGAAAAAAAGCGAAGCCGAGAGGAAATCGGAGGATCACAACGAGAACAACATGTCCGAACTGAAGAAGCTCGCCGAACGAGCGATTAGCATGGGAAAGGGACCGCCGGTGGTGCCACCGGTCAAGCGGTAAGAAATCTCGGGGATTTTGGCTGGAAATGACTGGAAAACCCCATTTCTGACCCCCCAAAAATCGGCTAAAAATGA</canonical_amplicon>
		<polymorphic_amplicon>GCGTATTTTAACTCATTTTCTGTCATTTTCAACCGAAAATTCTTCCAGAAAAARAGCGAAGCCGAGAGGAAATCGGAGGATCACAACGAGAACAACATGTCCGAACTGAAGAAGCTCGCCGAACGAGCGATTAGCATGGGAAAGGGACCGCCGGTGGTGCCACCGGTCAAGCGGTAAGAAATCTCGGGGATTTTGGCTGGAAATGACTGGAAAACCCCATTTCTGACCCCCCAAAAATCGGCTAAAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32673</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>223637</contig_pos>
        <strand>+</strand>
        <context>TATGCAGGAC[A/G]GWTGGCAGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGAC</left_flank>
        <right_flank>GCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAAAATGACCTAAAAATCGATTTTTTGCTTTTTTTTTCTCTAATTCTCTTGTTTTCTGTACATATCCGGTCCGTCCCACAGTACATTGAAATGTATGTAATTTATTGATTTTTTCCGCCTGTTTTTTCCCTTTTTTTCTAGCTGTGATTTCACTTTTTTCCATTGATTTCCCAAAGATTTCTCTCGATTTTTAATTTATTTTTTTGATTTTTTTTGAATCTATACATGACTTTTTTCAAGAAAAATCCCCAAAAAATTGGCTTAAAACGACCTAAAAATGGCTGAAACCATGAATGTTTTTGAGGTCAAAAATCGATTTTTCGATTTATTTTCGAATTTTTTTGAATTTCCCGCCAAATCCAGATCCAAAAAAAAAATGTTCCGAGTCATCGTTCGCCACGCCCATCAGCAATCGGCTGCTCGTCAGGCGTTGATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTG</canonical>
            <polymorphic>CCAAAAATGACCTAAAAATCGATTTTTTGCTTTTTTTTTCTCTAATTCTCTTGTTTTCTGTACATATCCGGTCCGTCCCACAGTACATTGAAATGTATGTAATTTATTGATTTTTTCCGCCTGTTTTTTCCCTTTTTTTCTAGCTGTGATTTCACTTTTTTCCATTGATTTCCCAAAGATTTCTCTCGATTTTTAATTTATTTTTTTGATTTTTTTTGAATCTATACATGACTTTTTTCAAGAAAAATCCCCAAAAAATTGGCTTAAAACGACCTAAAAATGGCTGAAACCATGAATGTTTTTGAGGTCAAAAATCGATTTTTCGATTTATTTTCGAATTTTTTTGAATTTCCCGCCAAATCCAGATCCAAAAAAAAAATGTTCCGAGTCATCGTTCGCCACGCCCATCAGCAATCGGCTGCTCGTCAGGCGTTGATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACRGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>499 335 143 23</canonical_bands>
                <polymorphic_bands>522 335 143</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>152 143 135 131 119 112 60 35 23 23 23 21 17 6</canonical_bands>
                <polymorphic_bands>175 143 135 131 119 112 60 35 23 23 21 17 6</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCGATTTTTCGATTTATTTTC</pcr_primer_p1>
		<pcr_primer_p2>TATCGATTTTCAGCATTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>AATCGATTTTTCGATTTATTTTCGAATTTTTTTGAATTTCCCGCCAAATCCAGATCCAAAAAAAAAATGTTCCGAGTCATCGTTCGCCACGCCCATCAGCAATCGGCTGCTCGTCAGGCGTTGATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATA</canonical_amplicon>
		<polymorphic_amplicon>AATCGATTTTTCGATTTATTTTCGAATTTTTTTGAATTTCCCGCCAAATCCAGATCCAAAAAAAAAATGTTCCGAGTCATCGTTCGCCACGCCCATCAGCAATCGGCTGCTCGTCAGGCGTTGATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACRGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32674</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>223639</contig_pos>
        <strand>+</strand>
        <context>TGCAGGACRG[A/T]TGGCAGTGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAG</left_flank>
        <right_flank>TGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATGACCTAAAAATCGATTTTTTGCTTTTTTTTTCTCTAATTCTCTTGTTTTCTGTACATATCCGGTCCGTCCCACAGTACATTGAAATGTATGTAATTTATTGATTTTTTCCGCCTGTTTTTTCCCTTTTTTTCTAGCTGTGATTTCACTTTTTTCCATTGATTTCCCAAAGATTTCTCTCGATTTTTAATTTATTTTTTTGATTTTTTTTGAATCTATACATGACTTTTTTCAAGAAAAATCCCCAAAAAATTGGCTTAAAACGACCTAAAAATGGCTGAAACCATGAATGTTTTTGAGGTCAAAAATCGATTTTTCGATTTATTTTCGAATTTTTTTGAATTTCCCGCCAAATCCAGATCCAAAAAAAAAATGTTCCGAGTCATCGTTCGCCACGCCCATCAGCAATCGGCTGCTCGTCAGGCGTTGATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGAT</canonical>
            <polymorphic>AAAAATGACCTAAAAATCGATTTTTTGCTTTTTTTTTCTCTAATTCTCTTGTTTTCTGTACATATCCGGTCCGTCCCACAGTACATTGAAATGTATGTAATTTATTGATTTTTTCCGCCTGTTTTTTCCCTTTTTTTCTAGCTGTGATTTCACTTTTTTCCATTGATTTCCCAAAGATTTCTCTCGATTTTTAATTTATTTTTTTGATTTTTTTTGAATCTATACATGACTTTTTTCAAGAAAAATCCCCAAAAAATTGGCTTAAAACGACCTAAAAATGGCTGAAACCATGAATGTTTTTGAGGTCAAAAATCGATTTTTCGATTTATTTTCGAATTTTTTTGAATTTCCCGCCAAATCCAGATCCAAAAAAAAAATGTTCCGAGTCATCGTTCGCCACGCCCATCAGCAATCGGCTGCTCGTCAGGCGTTGATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGWTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>501 335 141 23</canonical_bands>
                <polymorphic_bands>524 335 141</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>438 425 80 43 14</canonical_bands>
                <polymorphic_bands>518 425 43 14</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>152 141 135 133 119 112 60 35 23 23 23 21 17 6</canonical_bands>
                <polymorphic_bands>175 141 135 133 119 112 60 35 23 23 21 17 6</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCGATTTTTCGATTTATTTTC</pcr_primer_p1>
		<pcr_primer_p2>TATCGATTTTCAGCATTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>AATCGATTTTTCGATTTATTTTCGAATTTTTTTGAATTTCCCGCCAAATCCAGATCCAAAAAAAAAATGTTCCGAGTCATCGTTCGCCACGCCCATCAGCAATCGGCTGCTCGTCAGGCGTTGATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATA</canonical_amplicon>
		<polymorphic_amplicon>AATCGATTTTTCGATTTATTTTCGAATTTTTTTGAATTTCCCGCCAAATCCAGATCCAAAAAAAAAATGTTCCGAGTCATCGTTCGCCACGCCCATCAGCAATCGGCTGCTCGTCAGGCGTTGATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGWTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32675</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>223688</contig_pos>
        <strand></strand>
        <context>TGAAAAATTG[A/G]GWCAAATCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTG</left_flank>
        <right_flank>GACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTTCTGTACATATCCGGTCCGTCCCACAGTACATTGAAATGTATGTAATTTATTGATTTTTTCCGCCTGTTTTTTCCCTTTTTTTCTAGCTGTGATTTCACTTTTTTCCATTGATTTCCCAAAGATTTCTCTCGATTTTTAATTTATTTTTTTGATTTTTTTTGAATCTATACATGACTTTTTTCAAGAAAAATCCCCAAAAAATTGGCTTAAAACGACCTAAAAATGGCTGAAACCATGAATGTTTTTGAGGTCAAAAATCGATTTTTCGATTTATTTTCGAATTTTTTTGAATTTCCCGCCAAATCCAGATCCAAAAAAAAAATGTTCCGAGTCATCGTTCGCCACGCCCATCAGCAATCGGCTGCTCGTCAGGCGTTGATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGATTTTTTGATTTTTTGAATCGATTTTTGACCCGAAAAACCAAAA</canonical>
            <polymorphic>TGTTTTCTGTACATATCCGGTCCGTCCCACAGTACATTGAAATGTATGTAATTTATTGATTTTTTCCGCCTGTTTTTTCCCTTTTTTTCTAGCTGTGATTTCACTTTTTTCCATTGATTTCCCAAAGATTTCTCTCGATTTTTAATTTATTTTTTTGATTTTTTTTGAATCTATACATGACTTTTTTCAAGAAAAATCCCCAAAAAATTGGCTTAAAACGACCTAAAAATGGCTGAAACCATGAATGTTTTTGAGGTCAAAAATCGATTTTTCGATTTATTTTCGAATTTTTTTGAATTTCCCGCCAAATCCAGATCCAAAAAAAAAATGTTCCGAGTCATCGTTCGCCACGCCCATCAGCAATCGGCTGCTCGTCAGGCGTTGATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGRGACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGATTTTTTGATTTTTTGAATCGATTTTTGACCCGAAAAACCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGAGAAAATCATTCGAGTC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCGGTCGATTTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>197</pcr_amplicon_size>
		<canonical_amplicon>ATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGRGACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32676</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>223690</contig_pos>
        <strand></strand>
        <context>AAAAATTGRG[A/T]CAAATCGACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAG</left_flank>
        <right_flank>CAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCTGTACATATCCGGTCCGTCCCACAGTACATTGAAATGTATGTAATTTATTGATTTTTTCCGCCTGTTTTTTCCCTTTTTTTCTAGCTGTGATTTCACTTTTTTCCATTGATTTCCCAAAGATTTCTCTCGATTTTTAATTTATTTTTTTGATTTTTTTTGAATCTATACATGACTTTTTTCAAGAAAAATCCCCAAAAAATTGGCTTAAAACGACCTAAAAATGGCTGAAACCATGAATGTTTTTGAGGTCAAAAATCGATTTTTCGATTTATTTTCGAATTTTTTTGAATTTCCCGCCAAATCCAGATCCAAAAAAAAAATGTTCCGAGTCATCGTTCGCCACGCCCATCAGCAATCGGCTGCTCGTCAGGCGTTGATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGATTTTTTGATTTTTTGAATCGATTTTTGACCCGAAAAACCAAAAAA</canonical>
            <polymorphic>TTTTCTGTACATATCCGGTCCGTCCCACAGTACATTGAAATGTATGTAATTTATTGATTTTTTCCGCCTGTTTTTTCCCTTTTTTTCTAGCTGTGATTTCACTTTTTTCCATTGATTTCCCAAAGATTTCTCTCGATTTTTAATTTATTTTTTTGATTTTTTTTGAATCTATACATGACTTTTTTCAAGAAAAATCCCCAAAAAATTGGCTTAAAACGACCTAAAAATGGCTGAAACCATGAATGTTTTTGAGGTCAAAAATCGATTTTTCGATTTATTTTCGAATTTTTTTGAATTTCCCGCCAAATCCAGATCCAAAAAAAAAATGTTCCGAGTCATCGTTCGCCACGCCCATCAGCAATCGGCTGCTCGTCAGGCGTTGATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGWCAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGATTTTTTGATTTTTTGAATCGATTTTTGACCCGAAAAACCAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGAGAAAATCATTCGAGTC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCGGTCGATTTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>197</pcr_amplicon_size>
		<canonical_amplicon>ATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGWCAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32677</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>223749</contig_pos>
        <strand></strand>
        <context>CCTAAAAATC[T/C]AGAAAAATCG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATC</left_flank>
        <right_flank>AGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAG</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCCGCCTGTTTTTTCCCTTTTTTTCTAGCTGTGATTTCACTTTTTTCCATTGATTTCCCAAAGATTTCTCTCGATTTTTAATTTATTTTTTTGATTTTTTTTGAATCTATACATGACTTTTTTCAAGAAAAATCCCCAAAAAATTGGCTTAAAACGACCTAAAAATGGCTGAAACCATGAATGTTTTTGAGGTCAAAAATCGATTTTTCGATTTATTTTCGAATTTTTTTGAATTTCCCGCCAAATCCAGATCCAAAAAAAAAATGTTCCGAGTCATCGTTCGCCACGCCCATCAGCAATCGGCTGCTCGTCAGGCGTTGATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGATTTTTTGATTTTTTGAATCGATTTTTGACCCGAAAAACCAAAAAAATCGAGGAATTTTGACCTAGGAACGTTAAAAAATGGTGAAAATCGACAAATTATCAATG</canonical>
            <polymorphic>TTTTCCGCCTGTTTTTTCCCTTTTTTTCTAGCTGTGATTTCACTTTTTTCCATTGATTTCCCAAAGATTTCTCTCGATTTTTAATTTATTTTTTTGATTTTTTTTGAATCTATACATGACTTTTTTCAAGAAAAATCCCCAAAAAATTGGCTTAAAACGACCTAAAAATGGCTGAAACCATGAATGTTTTTGAGGTCAAAAATCGATTTTTCGATTTATTTTCGAATTTTTTTGAATTTCCCGCCAAATCCAGATCCAAAAAAAAAATGTTCCGAGTCATCGTTCGCCACGCCCATCAGCAATCGGCTGCTCGTCAGGCGTTGATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCYAGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGATTTTTTGATTTTTTGAATCGATTTTTGACCCGAAAAACCAAAAAAATCGAGGAATTTTGACCTAGGAACGTTAAAAAATGGTGAAAATCGACAAATTATCAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>471 234 118 78 42 29 28</canonical_bands>
                <polymorphic_bands>549 234 118 42 29 28</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAAATACTGAAAATCACTGAA</pcr_primer_p1>
		<pcr_primer_p2>TGGAAGAGGAAGTTTTCTAGG</pcr_primer_p2>
		<pcr_amplicon_size>334</pcr_amplicon_size>
		<canonical_amplicon>TGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCA</canonical_amplicon>
		<polymorphic_amplicon>TGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCYAGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32678</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>223777</contig_pos>
        <strand>+</strand>
        <context>AATGTTGAAA[C/T]TCGGGTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAATGTTGAAA</left_flank>
        <right_flank>TCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGCTGTGATTTCACTTTTTTCCATTGATTTCCCAAAGATTTCTCTCGATTTTTAATTTATTTTTTTGATTTTTTTTGAATCTATACATGACTTTTTTCAAGAAAAATCCCCAAAAAATTGGCTTAAAACGACCTAAAAATGGCTGAAACCATGAATGTTTTTGAGGTCAAAAATCGATTTTTCGATTTATTTTCGAATTTTTTTGAATTTCCCGCCAAATCCAGATCCAAAAAAAAAATGTTCCGAGTCATCGTTCGCCACGCCCATCAGCAATCGGCTGCTCGTCAGGCGTTGATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGATTTTTTGATTTTTTGAATCGATTTTTGACCCGAAAAACCAAAAAAATCGAGGAATTTTGACCTAGGAACGTTAAAAAATGGTGAAAATCGACAAATTATCAATGGAGCGCACTTGCATTTTTTTTTCTTAAA</canonical>
            <polymorphic>TAGCTGTGATTTCACTTTTTTCCATTGATTTCCCAAAGATTTCTCTCGATTTTTAATTTATTTTTTTGATTTTTTTTGAATCTATACATGACTTTTTTCAAGAAAAATCCCCAAAAAATTGGCTTAAAACGACCTAAAAATGGCTGAAACCATGAATGTTTTTGAGGTCAAAAATCGATTTTTCGATTTATTTTCGAATTTTTTTGAATTTCCCGCCAAATCCAGATCCAAAAAAAAAATGTTCCGAGTCATCGTTCGCCACGCCCATCAGCAATCGGCTGCTCGTCAGGCGTTGATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAATGTTGAAAYTCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGATTTTTTGATTTTTTGAATCGATTTTTGACCCGAAAAACCAAAAAAATCGAGGAATTTTGACCTAGGAACGTTAAAAAATGGTGAAAATCGACAAATTATCAATGGAGCGCACTTGCATTTTTTTTTCTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGCTGAAAATCGATAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGGAAGAGGAAGTTTTCTAGG</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>AAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCA</canonical_amplicon>
		<polymorphic_amplicon>AAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAATGTTGAAAYTCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32679</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>223846</contig_pos>
        <strand></strand>
        <context>gccgagtttt[T/C]tkgaaattct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTT</left_flank>
        <right_flank>TTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTTGAATCTATACATGACTTTTTTCAAGAAAAATCCCCAAAAAATTGGCTTAAAACGACCTAAAAATGGCTGAAACCATGAATGTTTTTGAGGTCAAAAATCGATTTTTCGATTTATTTTCGAATTTTTTTGAATTTCCCGCCAAATCCAGATCCAAAAAAAAAATGTTCCGAGTCATCGTTCGCCACGCCCATCAGCAATCGGCTGCTCGTCAGGCGTTGATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGATTTTTTGATTTTTTGAATCGATTTTTGACCCGAAAAACCAAAAAAATCGAGGAATTTTGACCTAGGAACGTTAAAAAATGGTGAAAATCGACAAATTATCAATGGAGCGCACTTGCATTTTTTTTTCTTAAAAATGCCCGGTTTTGCCTCTAAACATGATTTTAAACCAAAAACCATATTTTCCATTCCAAATATCGCATT</canonical>
            <polymorphic>TTTTTTTTGAATCTATACATGACTTTTTTCAAGAAAAATCCCCAAAAAATTGGCTTAAAACGACCTAAAAATGGCTGAAACCATGAATGTTTTTGAGGTCAAAAATCGATTTTTCGATTTATTTTCGAATTTTTTTGAATTTCCCGCCAAATCCAGATCCAAAAAAAAAATGTTCCGAGTCATCGTTCGCCACGCCCATCAGCAATCGGCTGCTCGTCAGGCGTTGATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTYTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGATTTTTTGATTTTTTGAATCGATTTTTGACCCGAAAAACCAAAAAAATCGAGGAATTTTGACCTAGGAACGTTAAAAAATGGTGAAAATCGACAAATTATCAATGGAGCGCACTTGCATTTTTTTTTCTTAAAAATGCCCGGTTTTGCCTCTAAACATGATTTTAAACCAAAAACCATATTTTCCATTCCAAATATCGCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAAATCGACCGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCTGGAAGAGGAAGTTTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGG</canonical_amplicon>
		<polymorphic_amplicon>AGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTYTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32680</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>223848</contig_pos>
        <strand></strand>
        <context>cgagttttyt[T/G]gaaattctag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTT</left_flank>
        <right_flank>GAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTGAATCTATACATGACTTTTTTCAAGAAAAATCCCCAAAAAATTGGCTTAAAACGACCTAAAAATGGCTGAAACCATGAATGTTTTTGAGGTCAAAAATCGATTTTTCGATTTATTTTCGAATTTTTTTGAATTTCCCGCCAAATCCAGATCCAAAAAAAAAATGTTCCGAGTCATCGTTCGCCACGCCCATCAGCAATCGGCTGCTCGTCAGGCGTTGATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGATTTTTTGATTTTTTGAATCGATTTTTGACCCGAAAAACCAAAAAAATCGAGGAATTTTGACCTAGGAACGTTAAAAAATGGTGAAAATCGACAAATTATCAATGGAGCGCACTTGCATTTTTTTTTCTTAAAAATGCCCGGTTTTGCCTCTAAACATGATTTTAAACCAAAAACCATATTTTCCATTCCAAATATCGCATTTT</canonical>
            <polymorphic>TTTTTTGAATCTATACATGACTTTTTTCAAGAAAAATCCCCAAAAAATTGGCTTAAAACGACCTAAAAATGGCTGAAACCATGAATGTTTTTGAGGTCAAAAATCGATTTTTCGATTTATTTTCGAATTTTTTTGAATTTCCCGCCAAATCCAGATCCAAAAAAAAAATGTTCCGAGTCATCGTTCGCCACGCCCATCAGCAATCGGCTGCTCGTCAGGCGTTGATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTKGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGATTTTTTGATTTTTTGAATCGATTTTTGACCCGAAAAACCAAAAAAATCGAGGAATTTTGACCTAGGAACGTTAAAAAATGGTGAAAATCGACAAATTATCAATGGAGCGCACTTGCATTTTTTTTTCTTAAAAATGCCCGGTTTTGCCTCTAAACATGATTTTAAACCAAAAACCATATTTTCCATTCCAAATATCGCATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAAATCGACCGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCTGGAAGAGGAAGTTTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGG</canonical_amplicon>
		<polymorphic_amplicon>AGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTKGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32681</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>223870</contig_pos>
        <strand></strand>
        <context>ccaccaattt[T/A]tttccaattt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTT</left_flank>
        <right_flank>TTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCAAGAAAAATCCCCAAAAAATTGGCTTAAAACGACCTAAAAATGGCTGAAACCATGAATGTTTTTGAGGTCAAAAATCGATTTTTCGATTTATTTTCGAATTTTTTTGAATTTCCCGCCAAATCCAGATCCAAAAAAAAAATGTTCCGAGTCATCGTTCGCCACGCCCATCAGCAATCGGCTGCTCGTCAGGCGTTGATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGATTTTTTGATTTTTTGAATCGATTTTTGACCCGAAAAACCAAAAAAATCGAGGAATTTTGACCTAGGAACGTTAAAAAATGGTGAAAATCGACAAATTATCAATGGAGCGCACTTGCATTTTTTTTTCTTAAAAATGCCCGGTTTTGCCTCTAAACATGATTTTAAACCAAAAACCATATTTTCCATTCCAAATATCGCATTTTCGCTCCATTGAACCTGAATTTT</canonical>
            <polymorphic>TTTTTCAAGAAAAATCCCCAAAAAATTGGCTTAAAACGACCTAAAAATGGCTGAAACCATGAATGTTTTTGAGGTCAAAAATCGATTTTTCGATTTATTTTCGAATTTTTTTGAATTTCCCGCCAAATCCAGATCCAAAAAAAAAATGTTCCGAGTCATCGTTCGCCACGCCCATCAGCAATCGGCTGCTCGTCAGGCGTTGATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTWTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGATTTTTTGATTTTTTGAATCGATTTTTGACCCGAAAAACCAAAAAAATCGAGGAATTTTGACCTAGGAACGTTAAAAAATGGTGAAAATCGACAAATTATCAATGGAGCGCACTTGCATTTTTTTTTCTTAAAAATGCCCGGTTTTGCCTCTAAACATGATTTTAAACCAAAAACCATATTTTCCATTCCAAATATCGCATTTTCGCTCCATTGAACCTGAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAAATCGACCGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCTGGAAGAGGAAGTTTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGG</canonical_amplicon>
		<polymorphic_amplicon>AGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTWTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32682</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>223947</contig_pos>
        <strand>+</strand>
        <context>AAATTTTTTT[A/T]MGCRAAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTT</left_flank>
        <right_flank>AGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATCGATTTTTCGATTTATTTTCGAATTTTTTTGAATTTCCCGCCAAATCCAGATCCAAAAAAAAAATGTTCCGAGTCATCGTTCGCCACGCCCATCAGCAATCGGCTGCTCGTCAGGCGTTGATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGATTTTTTGATTTTTTGAATCGATTTTTGACCCGAAAAACCAAAAAAATCGAGGAATTTTGACCTAGGAACGTTAAAAAATGGTGAAAATCGACAAATTATCAATGGAGCGCACTTGCATTTTTTTTTCTTAAAAATGCCCGGTTTTGCCTCTAAACATGATTTTAAACCAAAAACCATATTTTCCATTCCAAATATCGCATTTTCGCTCCATTGAACCTGAATTTTGAGCAGATTATCAATAGAGCGCACTTGTAAATTTTTTGCTTGAAAATACATTTTTGGCGCTAAATTCGATTTTGAAT</canonical>
            <polymorphic>AAAATCGATTTTTCGATTTATTTTCGAATTTTTTTGAATTTCCCGCCAAATCCAGATCCAAAAAAAAAATGTTCCGAGTCATCGTTCGCCACGCCCATCAGCAATCGGCTGCTCGTCAGGCGTTGATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTWAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGATTTTTTGATTTTTTGAATCGATTTTTGACCCGAAAAACCAAAAAAATCGAGGAATTTTGACCTAGGAACGTTAAAAAATGGTGAAAATCGACAAATTATCAATGGAGCGCACTTGCATTTTTTTTTCTTAAAAATGCCCGGTTTTGCCTCTAAACATGATTTTAAACCAAAAACCATATTTTCCATTCCAAATATCGCATTTTCGCTCCATTGAACCTGAATTTTGAGCAGATTATCAATAGAGCGCACTTGTAAATTTTTTGCTTGAAAATACATTTTTGGCGCTAAATTCGATTTTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCGACCGAAAAATGT</pcr_primer_p1>
		<pcr_primer_p2>ATCAATAATCACCAAGAGCATAG</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTWAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32683</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>223948</contig_pos>
        <strand></strand>
        <context>AATTTTTTTW[A/C]GCRAAAATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTT</left_flank>
        <right_flank>GCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCGATTTTTCGATTTATTTTCGAATTTTTTTGAATTTCCCGCCAAATCCAGATCCAAAAAAAAAATGTTCCGAGTCATCGTTCGCCACGCCCATCAGCAATCGGCTGCTCGTCAGGCGTTGATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGATTTTTTGATTTTTTGAATCGATTTTTGACCCGAAAAACCAAAAAAATCGAGGAATTTTGACCTAGGAACGTTAAAAAATGGTGAAAATCGACAAATTATCAATGGAGCGCACTTGCATTTTTTTTTCTTAAAAATGCCCGGTTTTGCCTCTAAACATGATTTTAAACCAAAAACCATATTTTCCATTCCAAATATCGCATTTTCGCTCCATTGAACCTGAATTTTGAGCAGATTATCAATAGAGCGCACTTGTAAATTTTTTGCTTGAAAATACATTTTTGGCGCTAAATTCGATTTTGAATC</canonical>
            <polymorphic>AAATCGATTTTTCGATTTATTTTCGAATTTTTTTGAATTTCCCGCCAAATCCAGATCCAAAAAAAAAATGTTCCGAGTCATCGTTCGCCACGCCCATCAGCAATCGGCTGCTCGTCAGGCGTTGATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTMGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGATTTTTTGATTTTTTGAATCGATTTTTGACCCGAAAAACCAAAAAAATCGAGGAATTTTGACCTAGGAACGTTAAAAAATGGTGAAAATCGACAAATTATCAATGGAGCGCACTTGCATTTTTTTTTCTTAAAAATGCCCGGTTTTGCCTCTAAACATGATTTTAAACCAAAAACCATATTTTCCATTCCAAATATCGCATTTTCGCTCCATTGAACCTGAATTTTGAGCAGATTATCAATAGAGCGCACTTGTAAATTTTTTGCTTGAAAATACATTTTTGGCGCTAAATTCGATTTTGAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCGACCGAAAAATGT</pcr_primer_p1>
		<pcr_primer_p2>ATCAATAATCACCAAGAGCATAG</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTMGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32684</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>223951</contig_pos>
        <strand>+</strand>
        <context>TTTTTTWMGC[A/G]AAAATTCAAM</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGC</left_flank>
        <right_flank>AAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGATTTTTCGATTTATTTTCGAATTTTTTTGAATTTCCCGCCAAATCCAGATCCAAAAAAAAAATGTTCCGAGTCATCGTTCGCCACGCCCATCAGCAATCGGCTGCTCGTCAGGCGTTGATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGATTTTTTGATTTTTTGAATCGATTTTTGACCCGAAAAACCAAAAAAATCGAGGAATTTTGACCTAGGAACGTTAAAAAATGGTGAAAATCGACAAATTATCAATGGAGCGCACTTGCATTTTTTTTTCTTAAAAATGCCCGGTTTTGCCTCTAAACATGATTTTAAACCAAAAACCATATTTTCCATTCCAAATATCGCATTTTCGCTCCATTGAACCTGAATTTTGAGCAGATTATCAATAGAGCGCACTTGTAAATTTTTTGCTTGAAAATACATTTTTGGCGCTAAATTCGATTTTGAATCGTT</canonical>
            <polymorphic>TCGATTTTTCGATTTATTTTCGAATTTTTTTGAATTTCCCGCCAAATCCAGATCCAAAAAAAAAATGTTCCGAGTCATCGTTCGCCACGCCCATCAGCAATCGGCTGCTCGTCAGGCGTTGATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCRAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGATTTTTTGATTTTTTGAATCGATTTTTGACCCGAAAAACCAAAAAAATCGAGGAATTTTGACCTAGGAACGTTAAAAAATGGTGAAAATCGACAAATTATCAATGGAGCGCACTTGCATTTTTTTTTCTTAAAAATGCCCGGTTTTGCCTCTAAACATGATTTTAAACCAAAAACCATATTTTCCATTCCAAATATCGCATTTTCGCTCCATTGAACCTGAATTTTGAGCAGATTATCAATAGAGCGCACTTGTAAATTTTTTGCTTGAAAATACATTTTTGGCGCTAAATTCGATTTTGAATCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCGACCGAAAAATGT</pcr_primer_p1>
		<pcr_primer_p2>ATCAATAATCACCAAGAGCATAG</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCRAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32685</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>223961</contig_pos>
        <strand>+</strand>
        <context>RAAAATTCAA[A/C]ATTCCCATGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAA</left_flank>
        <right_flank>ATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTATTTTCGAATTTTTTTGAATTTCCCGCCAAATCCAGATCCAAAAAAAAAATGTTCCGAGTCATCGTTCGCCACGCCCATCAGCAATCGGCTGCTCGTCAGGCGTTGATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGATTTTTTGATTTTTTGAATCGATTTTTGACCCGAAAAACCAAAAAAATCGAGGAATTTTGACCTAGGAACGTTAAAAAATGGTGAAAATCGACAAATTATCAATGGAGCGCACTTGCATTTTTTTTTCTTAAAAATGCCCGGTTTTGCCTCTAAACATGATTTTAAACCAAAAACCATATTTTCCATTCCAAATATCGCATTTTCGCTCCATTGAACCTGAATTTTGAGCAGATTATCAATAGAGCGCACTTGTAAATTTTTTGCTTGAAAATACATTTTTGGCGCTAAATTCGATTTTGAATCGTTTTTGAGCATA</canonical>
            <polymorphic>GATTTATTTTCGAATTTTTTTGAATTTCCCGCCAAATCCAGATCCAAAAAAAAAATGTTCCGAGTCATCGTTCGCCACGCCCATCAGCAATCGGCTGCTCGTCAGGCGTTGATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAMATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGATTTTTTGATTTTTTGAATCGATTTTTGACCCGAAAAACCAAAAAAATCGAGGAATTTTGACCTAGGAACGTTAAAAAATGGTGAAAATCGACAAATTATCAATGGAGCGCACTTGCATTTTTTTTTCTTAAAAATGCCCGGTTTTGCCTCTAAACATGATTTTAAACCAAAAACCATATTTTCCATTCCAAATATCGCATTTTCGCTCCATTGAACCTGAATTTTGAGCAGATTATCAATAGAGCGCACTTGTAAATTTTTTGCTTGAAAATACATTTTTGGCGCTAAATTCGATTTTGAATCGTTTTTGAGCATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>367 237 167 41 35 33 29 17 16 13 12 10 9 7 7</canonical_bands>
                <polymorphic_bands>367 244 167 41 35 33 29 17 16 13 12 10 9 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>237 199 168 126 41 35 33 29 17 16 16 14 13 12 11 10 9 7 7</canonical_bands>
                <polymorphic_bands>244 199 168 126 41 35 33 29 17 16 16 14 13 12 11 10 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCGACCGAAAAATGT</pcr_primer_p1>
		<pcr_primer_p2>ATCAATAATCACCAAGAGCATAG</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAMATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32686</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>224007</contig_pos>
        <strand>+</strand>
        <context>GTTCGGTCGG[A/C]TCGGTGATCC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGG</left_flank>
        <right_flank>TCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGAT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAAAATGTTCCGAGTCATCGTTCGCCACGCCCATCAGCAATCGGCTGCTCGTCAGGCGTTGATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGATTTTTTGATTTTTTGAATCGATTTTTGACCCGAAAAACCAAAAAAATCGAGGAATTTTGACCTAGGAACGTTAAAAAATGGTGAAAATCGACAAATTATCAATGGAGCGCACTTGCATTTTTTTTTCTTAAAAATGCCCGGTTTTGCCTCTAAACATGATTTTAAACCAAAAACCATATTTTCCATTCCAAATATCGCATTTTCGCTCCATTGAACCTGAATTTTGAGCAGATTATCAATAGAGCGCACTTGTAAATTTTTTGCTTGAAAATACATTTTTGGCGCTAAATTCGATTTTGAATCGTTTTTGAGCATAAAATACAGAACATACGGCATTTTATATCCTAAGAATTCAATTTCGC</canonical>
            <polymorphic>AAAAAAAAATGTTCCGAGTCATCGTTCGCCACGCCCATCAGCAATCGGCTGCTCGTCAGGCGTTGATCGAGAAAATCATTCGAGTCGATCATGCTGGAGAACTGGGAGCTGATAGGATCTATGCAGGACAGCTGGCAGTGCTGCAAGGTGCTGAAAATACTGAAAATCACTGAAAAATTGAGACAAATCGACCCAAAAATGCTGAAAATCGATAAAAAATCCGAAAAAAGACCTAAAAATCTAGAAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGMTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGATTTTTTGATTTTTTGAATCGATTTTTGACCCGAAAAACCAAAAAAATCGAGGAATTTTGACCTAGGAACGTTAAAAAATGGTGAAAATCGACAAATTATCAATGGAGCGCACTTGCATTTTTTTTTCTTAAAAATGCCCGGTTTTGCCTCTAAACATGATTTTAAACCAAAAACCATATTTTCCATTCCAAATATCGCATTTTCGCTCCATTGAACCTGAATTTTGAGCAGATTATCAATAGAGCGCACTTGTAAATTTTTTGCTTGAAAATACATTTTTGGCGCTAAATTCGATTTTGAATCGTTTTTGAGCATAAAATACAGAACATACGGCATTTTATATCCTAAGAATTCAATTTCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>501 152 112 60 48 35 23 23 23 17 6</canonical_bands>
                <polymorphic_bands>536 152 112 60 48 23 23 23 17 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCGACCGAAAAATGT</pcr_primer_p1>
		<pcr_primer_p2>ATCAATAATCACCAAGAGCATAG</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGCTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCGACCGAAAAATGTTGAAAATCGGGTTTTTTAGCCCAAAAAGATTGGTGGCCTAACTTTTTTAGTTTTCTAGGCCATGGCCGAGTTTTTTTGAAATTCTAGGCCACCAATTTTTTTCCAATTTTTAGAAAAAAAAATTCTGAAAATTTTGAATTTTTTTGGAAGAAAAATTTCTTTTCGAAATTTTTTTTAGCGAAAATTCAAAATTCCCATGGCCTAGAAAACTTCCTCTTCCAGGCAGTTCGGTCGGMTCGGTGATCCGAAAAATGTGGGACGAGGAGAAGGAGCATTTGGATACGATGGAACGTCTGGCGGCGAAGCATAACGTGCCGCATACCATATTCTCGCCGGTTTTCAGTGTTGCCGCCTATGCTCTTGGTGATTATTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32687</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>257360</contig_pos>
        <strand>+</strand>
        <context>TCGTATTTTC[A/T]GACCCTAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTC</left_flank>
        <right_flank>GACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGCCAGCAAGCTCCTACCTTTTCTATTCCCTGCGGATGGTGGTCGTGGTGGTGGTGGTACGGCGTCTAGCGGTCCTGGCCGTATGCCAGCTTCCTCGGCCTCGGCCAGCTCGGCGAGCAGATCCAGGAAGTTCTGAAAATGTCGATTTGAGCTCAAAATTCGTATTTTTGAGGCTGAAAATGCCCAAAAAATAAGCTCAAAAAATTGAACAACTTACATTATCCGATTGTCCCAATGGTGCTGACGATGTAGACGTCGACGATGAATTCGTCGTTGTAGAAGGCGTCACTGGCTTCTGACTCTGCTGTATCATTGCCTGATTAGCAGCGATCGCAGCGGCTCGTGGAGCACGTCCAGATGGTGATGGAAGGAGAGTGGTGGTGGATGATGGCTGGGTTGTTGGAGCAGCTGGAATTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTTGGAGCTTCAAAATCCCAATTTTTTAATCGAAGATATCAACTTTAGAGCTATAAAATCGTAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGTGCTTAAAAATCCTCATTTCTGAGATTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGAAATTACCCTTGTTTGAGCC</canonical>
            <polymorphic>CGGCCAGCAAGCTCCTACCTTTTCTATTCCCTGCGGATGGTGGTCGTGGTGGTGGTGGTACGGCGTCTAGCGGTCCTGGCCGTATGCCAGCTTCCTCGGCCTCGGCCAGCTCGGCGAGCAGATCCAGGAAGTTCTGAAAATGTCGATTTGAGCTCAAAATTCGTATTTTTGAGGCTGAAAATGCCCAAAAAATAAGCTCAAAAAATTGAACAACTTACATTATCCGATTGTCCCAATGGTGCTGACGATGTAGACGTCGACGATGAATTCGTCGTTGTAGAAGGCGTCACTGGCTTCTGACTCTGCTGTATCATTGCCTGATTAGCAGCGATCGCAGCGGCTCGTGGAGCACGTCCAGATGGTGATGGAAGGAGAGTGGTGGTGGATGATGGCTGGGTTGTTGGAGCAGCTGGAATTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCWGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTTGGAGCTTCAAAATCCCAATTTTTTAATCGAAGATATCAACTTTAGAGCTATAAAATCGTAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGTGCTTAAAAATCCTCATTTCTGAGATTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGAAATTACCCTTGTTTGAGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGATTTTGTGGATTTTTAG</pcr_primer_p1>
		<pcr_primer_p2>AGACCTAAAAATACGGTTTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCWGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32688</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>257372</contig_pos>
        <strand>+</strand>
        <context>ACCCTAAATC[A/G]CCCACTTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATC</left_flank>
        <right_flank>CCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTACCTTTTCTATTCCCTGCGGATGGTGGTCGTGGTGGTGGTGGTACGGCGTCTAGCGGTCCTGGCCGTATGCCAGCTTCCTCGGCCTCGGCCAGCTCGGCGAGCAGATCCAGGAAGTTCTGAAAATGTCGATTTGAGCTCAAAATTCGTATTTTTGAGGCTGAAAATGCCCAAAAAATAAGCTCAAAAAATTGAACAACTTACATTATCCGATTGTCCCAATGGTGCTGACGATGTAGACGTCGACGATGAATTCGTCGTTGTAGAAGGCGTCACTGGCTTCTGACTCTGCTGTATCATTGCCTGATTAGCAGCGATCGCAGCGGCTCGTGGAGCACGTCCAGATGGTGATGGAAGGAGAGTGGTGGTGGATGATGGCTGGGTTGTTGGAGCAGCTGGAATTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTTGGAGCTTCAAAATCCCAATTTTTTAATCGAAGATATCAACTTTAGAGCTATAAAATCGTAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGTGCTTAAAAATCCTCATTTCTGAGATTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGAAATTACCCTTGTTTGAGCCCTAAAATCGTAT</canonical>
            <polymorphic>TCCTACCTTTTCTATTCCCTGCGGATGGTGGTCGTGGTGGTGGTGGTACGGCGTCTAGCGGTCCTGGCCGTATGCCAGCTTCCTCGGCCTCGGCCAGCTCGGCGAGCAGATCCAGGAAGTTCTGAAAATGTCGATTTGAGCTCAAAATTCGTATTTTTGAGGCTGAAAATGCCCAAAAAATAAGCTCAAAAAATTGAACAACTTACATTATCCGATTGTCCCAATGGTGCTGACGATGTAGACGTCGACGATGAATTCGTCGTTGTAGAAGGCGTCACTGGCTTCTGACTCTGCTGTATCATTGCCTGATTAGCAGCGATCGCAGCGGCTCGTGGAGCACGTCCAGATGGTGATGGAAGGAGAGTGGTGGTGGATGATGGCTGGGTTGTTGGAGCAGCTGGAATTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCRCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTTGGAGCTTCAAAATCCCAATTTTTTAATCGAAGATATCAACTTTAGAGCTATAAAATCGTAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGTGCTTAAAAATCCTCATTTCTGAGATTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGAAATTACCCTTGTTTGAGCCCTAAAATCGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGATTTTGTGGATTTTTAG</pcr_primer_p1>
		<pcr_primer_p2>AGACCTAAAAATACGGTTTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCRCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32689</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>257389</contig_pos>
        <strand>+</strand>
        <context>TTGAGCTCAA[A/G]AAWCGTCGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAA</left_flank>
        <right_flank>AAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTGCGGATGGTGGTCGTGGTGGTGGTGGTACGGCGTCTAGCGGTCCTGGCCGTATGCCAGCTTCCTCGGCCTCGGCCAGCTCGGCGAGCAGATCCAGGAAGTTCTGAAAATGTCGATTTGAGCTCAAAATTCGTATTTTTGAGGCTGAAAATGCCCAAAAAATAAGCTCAAAAAATTGAACAACTTACATTATCCGATTGTCCCAATGGTGCTGACGATGTAGACGTCGACGATGAATTCGTCGTTGTAGAAGGCGTCACTGGCTTCTGACTCTGCTGTATCATTGCCTGATTAGCAGCGATCGCAGCGGCTCGTGGAGCACGTCCAGATGGTGATGGAAGGAGAGTGGTGGTGGATGATGGCTGGGTTGTTGGAGCAGCTGGAATTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTTGGAGCTTCAAAATCCCAATTTTTTAATCGAAGATATCAACTTTAGAGCTATAAAATCGTAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGTGCTTAAAAATCCTCATTTCTGAGATTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGAAATTACCCTTGTTTGAGCCCTAAAATCGTATTTTTAAGTCTGAAAATA</canonical>
            <polymorphic>CCTGCGGATGGTGGTCGTGGTGGTGGTGGTACGGCGTCTAGCGGTCCTGGCCGTATGCCAGCTTCCTCGGCCTCGGCCAGCTCGGCGAGCAGATCCAGGAAGTTCTGAAAATGTCGATTTGAGCTCAAAATTCGTATTTTTGAGGCTGAAAATGCCCAAAAAATAAGCTCAAAAAATTGAACAACTTACATTATCCGATTGTCCCAATGGTGCTGACGATGTAGACGTCGACGATGAATTCGTCGTTGTAGAAGGCGTCACTGGCTTCTGACTCTGCTGTATCATTGCCTGATTAGCAGCGATCGCAGCGGCTCGTGGAGCACGTCCAGATGGTGATGGAAGGAGAGTGGTGGTGGATGATGGCTGGGTTGTTGGAGCAGCTGGAATTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAARAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTTGGAGCTTCAAAATCCCAATTTTTTAATCGAAGATATCAACTTTAGAGCTATAAAATCGTAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGTGCTTAAAAATCCTCATTTCTGAGATTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGAAATTACCCTTGTTTGAGCCCTAAAATCGTATTTTTAAGTCTGAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>326 320 183 171</canonical_bands>
                <polymorphic_bands>491 326 183</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGATTTTGTGGATTTTTAG</pcr_primer_p1>
		<pcr_primer_p2>AGACCTAAAAATACGGTTTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAARAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32690</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>257392</contig_pos>
        <strand>+</strand>
        <context>AGCTCAARAA[A/T]CGTCGTATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAA</left_flank>
        <right_flank>CGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGGATGGTGGTCGTGGTGGTGGTGGTACGGCGTCTAGCGGTCCTGGCCGTATGCCAGCTTCCTCGGCCTCGGCCAGCTCGGCGAGCAGATCCAGGAAGTTCTGAAAATGTCGATTTGAGCTCAAAATTCGTATTTTTGAGGCTGAAAATGCCCAAAAAATAAGCTCAAAAAATTGAACAACTTACATTATCCGATTGTCCCAATGGTGCTGACGATGTAGACGTCGACGATGAATTCGTCGTTGTAGAAGGCGTCACTGGCTTCTGACTCTGCTGTATCATTGCCTGATTAGCAGCGATCGCAGCGGCTCGTGGAGCACGTCCAGATGGTGATGGAAGGAGAGTGGTGGTGGATGATGGCTGGGTTGTTGGAGCAGCTGGAATTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTTGGAGCTTCAAAATCCCAATTTTTTAATCGAAGATATCAACTTTAGAGCTATAAAATCGTAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGTGCTTAAAAATCCTCATTTCTGAGATTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGAAATTACCCTTGTTTGAGCCCTAAAATCGTATTTTTAAGTCTGAAAATACTT</canonical>
            <polymorphic>GCGGATGGTGGTCGTGGTGGTGGTGGTACGGCGTCTAGCGGTCCTGGCCGTATGCCAGCTTCCTCGGCCTCGGCCAGCTCGGCGAGCAGATCCAGGAAGTTCTGAAAATGTCGATTTGAGCTCAAAATTCGTATTTTTGAGGCTGAAAATGCCCAAAAAATAAGCTCAAAAAATTGAACAACTTACATTATCCGATTGTCCCAATGGTGCTGACGATGTAGACGTCGACGATGAATTCGTCGTTGTAGAAGGCGTCACTGGCTTCTGACTCTGCTGTATCATTGCCTGATTAGCAGCGATCGCAGCGGCTCGTGGAGCACGTCCAGATGGTGATGGAAGGAGAGTGGTGGTGGATGATGGCTGGGTTGTTGGAGCAGCTGGAATTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAWCGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTTGGAGCTTCAAAATCCCAATTTTTTAATCGAAGATATCAACTTTAGAGCTATAAAATCGTAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGTGCTTAAAAATCCTCATTTCTGAGATTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGAAATTACCCTTGTTTGAGCCCTAAAATCGTATTTTTAAGTCTGAAAATACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>500 222 181 97</canonical_bands>
                <polymorphic_bands>681 222 97</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGATTTTGTGGATTTTTAG</pcr_primer_p1>
		<pcr_primer_p2>AGACCTAAAAATACGGTTTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAWCGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32691</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>257457</contig_pos>
        <strand>+</strand>
        <context>AAGGCTTAAA[A/G]ATCAGAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAA</left_flank>
        <right_flank>ATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCCTCGGCCAGCTCGGCGAGCAGATCCAGGAAGTTCTGAAAATGTCGATTTGAGCTCAAAATTCGTATTTTTGAGGCTGAAAATGCCCAAAAAATAAGCTCAAAAAATTGAACAACTTACATTATCCGATTGTCCCAATGGTGCTGACGATGTAGACGTCGACGATGAATTCGTCGTTGTAGAAGGCGTCACTGGCTTCTGACTCTGCTGTATCATTGCCTGATTAGCAGCGATCGCAGCGGCTCGTGGAGCACGTCCAGATGGTGATGGAAGGAGAGTGGTGGTGGATGATGGCTGGGTTGTTGGAGCAGCTGGAATTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTTGGAGCTTCAAAATCCCAATTTTTTAATCGAAGATATCAACTTTAGAGCTATAAAATCGTAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGTGCTTAAAAATCCTCATTTCTGAGATTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGAAATTACCCTTGTTTGAGCCCTAAAATCGTATTTTTAAGTCTGAAAATACTTATTTTTCCATACTTGTAAAATTCCGGGCCGGCCCGCCAAAGCCCGGGCCCGGGCCGGGCCTGAGG</canonical>
            <polymorphic>GGCCTCGGCCAGCTCGGCGAGCAGATCCAGGAAGTTCTGAAAATGTCGATTTGAGCTCAAAATTCGTATTTTTGAGGCTGAAAATGCCCAAAAAATAAGCTCAAAAAATTGAACAACTTACATTATCCGATTGTCCCAATGGTGCTGACGATGTAGACGTCGACGATGAATTCGTCGTTGTAGAAGGCGTCACTGGCTTCTGACTCTGCTGTATCATTGCCTGATTAGCAGCGATCGCAGCGGCTCGTGGAGCACGTCCAGATGGTGATGGAAGGAGAGTGGTGGTGGATGATGGCTGGGTTGTTGGAGCAGCTGGAATTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAARATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTTGGAGCTTCAAAATCCCAATTTTTTAATCGAAGATATCAACTTTAGAGCTATAAAATCGTAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGTGCTTAAAAATCCTCATTTCTGAGATTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGAAATTACCCTTGTTTGAGCCCTAAAATCGTATTTTTAAGTCTGAAAATACTTATTTTTCCATACTTGTAAAATTCCGGGCCGGCCCGCCAAAGCCCGGGCCCGGGCCGGGCCTGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGATTTTGTGGATTTTTAG</pcr_primer_p1>
		<pcr_primer_p2>AGACCTAAAAATACGGTTTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAARATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32692</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>257468</contig_pos>
        <strand>+</strand>
        <context>ATCAGAATTT[C/T]CGAGCYGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTT</left_flank>
        <right_flank>CGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTCGGCGAGCAGATCCAGGAAGTTCTGAAAATGTCGATTTGAGCTCAAAATTCGTATTTTTGAGGCTGAAAATGCCCAAAAAATAAGCTCAAAAAATTGAACAACTTACATTATCCGATTGTCCCAATGGTGCTGACGATGTAGACGTCGACGATGAATTCGTCGTTGTAGAAGGCGTCACTGGCTTCTGACTCTGCTGTATCATTGCCTGATTAGCAGCGATCGCAGCGGCTCGTGGAGCACGTCCAGATGGTGATGGAAGGAGAGTGGTGGTGGATGATGGCTGGGTTGTTGGAGCAGCTGGAATTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTTGGAGCTTCAAAATCCCAATTTTTTAATCGAAGATATCAACTTTAGAGCTATAAAATCGTAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGTGCTTAAAAATCCTCATTTCTGAGATTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGAAATTACCCTTGTTTGAGCCCTAAAATCGTATTTTTAAGTCTGAAAATACTTATTTTTCCATACTTGTAAAATTCCGGGCCGGCCCGCCAAAGCCCGGGCCCGGGCCGGGCCTGAGGAAATTTTCAAG</canonical>
            <polymorphic>GCTCGGCGAGCAGATCCAGGAAGTTCTGAAAATGTCGATTTGAGCTCAAAATTCGTATTTTTGAGGCTGAAAATGCCCAAAAAATAAGCTCAAAAAATTGAACAACTTACATTATCCGATTGTCCCAATGGTGCTGACGATGTAGACGTCGACGATGAATTCGTCGTTGTAGAAGGCGTCACTGGCTTCTGACTCTGCTGTATCATTGCCTGATTAGCAGCGATCGCAGCGGCTCGTGGAGCACGTCCAGATGGTGATGGAAGGAGAGTGGTGGTGGATGATGGCTGGGTTGTTGGAGCAGCTGGAATTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTYCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTTGGAGCTTCAAAATCCCAATTTTTTAATCGAAGATATCAACTTTAGAGCTATAAAATCGTAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGTGCTTAAAAATCCTCATTTCTGAGATTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGAAATTACCCTTGTTTGAGCCCTAAAATCGTATTTTTAAGTCTGAAAATACTTATTTTTCCATACTTGTAAAATTCCGGGCCGGCCCGCCAAAGCCCGGGCCCGGGCCGGGCCTGAGGAAATTTTCAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>408 226 125 114 91 36</canonical_bands>
                <polymorphic_bands>408 226 216 114 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAGATTTTGTGGATTTTTAGT</pcr_primer_p1>
		<pcr_primer_p2>AAAATGGGTATTTTCAGACCTAA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTYCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32693</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>257474</contig_pos>
        <strand>+</strand>
        <context>ATTTYCGAGC[C/T]GAAAATACCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGC</left_flank>
        <right_flank>GAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAGCAGATCCAGGAAGTTCTGAAAATGTCGATTTGAGCTCAAAATTCGTATTTTTGAGGCTGAAAATGCCCAAAAAATAAGCTCAAAAAATTGAACAACTTACATTATCCGATTGTCCCAATGGTGCTGACGATGTAGACGTCGACGATGAATTCGTCGTTGTAGAAGGCGTCACTGGCTTCTGACTCTGCTGTATCATTGCCTGATTAGCAGCGATCGCAGCGGCTCGTGGAGCACGTCCAGATGGTGATGGAAGGAGAGTGGTGGTGGATGATGGCTGGGTTGTTGGAGCAGCTGGAATTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTTGGAGCTTCAAAATCCCAATTTTTTAATCGAAGATATCAACTTTAGAGCTATAAAATCGTAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGTGCTTAAAAATCCTCATTTCTGAGATTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGAAATTACCCTTGTTTGAGCCCTAAAATCGTATTTTTAAGTCTGAAAATACTTATTTTTCCATACTTGTAAAATTCCGGGCCGGCCCGCCAAAGCCCGGGCCCGGGCCGGGCCTGAGGAAATTTTCAAGGCCCGG</canonical>
            <polymorphic>CGAGCAGATCCAGGAAGTTCTGAAAATGTCGATTTGAGCTCAAAATTCGTATTTTTGAGGCTGAAAATGCCCAAAAAATAAGCTCAAAAAATTGAACAACTTACATTATCCGATTGTCCCAATGGTGCTGACGATGTAGACGTCGACGATGAATTCGTCGTTGTAGAAGGCGTCACTGGCTTCTGACTCTGCTGTATCATTGCCTGATTAGCAGCGATCGCAGCGGCTCGTGGAGCACGTCCAGATGGTGATGGAAGGAGAGTGGTGGTGGATGATGGCTGGGTTGTTGGAGCAGCTGGAATTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCYGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTTGGAGCTTCAAAATCCCAATTTTTTAATCGAAGATATCAACTTTAGAGCTATAAAATCGTAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGTGCTTAAAAATCCTCATTTCTGAGATTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGAAATTACCCTTGTTTGAGCCCTAAAATCGTATTTTTAAGTCTGAAAATACTTATTTTTCCATACTTGTAAAATTCCGGGCCGGCCCGCCAAAGCCCGGGCCCGGGCCGGGCCTGAGGAAATTTTCAAGGCCCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>97 88 72 61 52 47 45 43 43 43 42 41 41 38 23 22 22 22 22 22 21 21 19 17 10 6 6 5 5 4</canonical_bands>
                <polymorphic_bands>97 88 72 61 52 47 45 43 43 43 43 42 41 41 38 23 22 22 22 22 21 19 17 10 6 6 5 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAGATTTTGTGGATTTTTAGT</pcr_primer_p1>
		<pcr_primer_p2>AAAATGGGTATTTTCAGACCTAA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCYGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32694</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>257549</contig_pos>
        <strand>+</strand>
        <context>TCAAAATCCC[A/C]ATTTTTTAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAACCGTATTTTTAGGTCTGAAAATACCCATTTTGGAGCTTCAAAATCCC</left_flank>
        <right_flank>ATTTTTTAATCGAAGATATCAACTTTAGAGCTATAAAATCGTAATTTCAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATAAGCTCAAAAAATTGAACAACTTACATTATCCGATTGTCCCAATGGTGCTGACGATGTAGACGTCGACGATGAATTCGTCGTTGTAGAAGGCGTCACTGGCTTCTGACTCTGCTGTATCATTGCCTGATTAGCAGCGATCGCAGCGGCTCGTGGAGCACGTCCAGATGGTGATGGAAGGAGAGTGGTGGTGGATGATGGCTGGGTTGTTGGAGCAGCTGGAATTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTTGGAGCTTCAAAATCCCAATTTTTTAATCGAAGATATCAACTTTAGAGCTATAAAATCGTAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGTGCTTAAAAATCCTCATTTCTGAGATTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGAAATTACCCTTGTTTGAGCCCTAAAATCGTATTTTTAAGTCTGAAAATACTTATTTTTCCATACTTGTAAAATTCCGGGCCGGCCCGCCAAAGCCCGGGCCCGGGCCGGGCCTGAGGAAATTTTCAAGGCCCGGGCCCGGCCCGGAAGGCCCGGTGTCAAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTTTC</canonical>
            <polymorphic>AAATAAGCTCAAAAAATTGAACAACTTACATTATCCGATTGTCCCAATGGTGCTGACGATGTAGACGTCGACGATGAATTCGTCGTTGTAGAAGGCGTCACTGGCTTCTGACTCTGCTGTATCATTGCCTGATTAGCAGCGATCGCAGCGGCTCGTGGAGCACGTCCAGATGGTGATGGAAGGAGAGTGGTGGTGGATGATGGCTGGGTTGTTGGAGCAGCTGGAATTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTTGGAGCTTCAAAATCCCMATTTTTTAATCGAAGATATCAACTTTAGAGCTATAAAATCGTAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGTGCTTAAAAATCCTCATTTCTGAGATTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGAAATTACCCTTGTTTGAGCCCTAAAATCGTATTTTTAAGTCTGAAAATACTTATTTTTCCATACTTGTAAAATTCCGGGCCGGCCCGCCAAAGCCCGGGCCCGGGCCGGGCCTGAGGAAATTTTCAAGGCCCGGGCCCGGCCCGGAAGGCCCGGTGTCAAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>148 122 109 69 64 62 48 43 43 39 38 35 29 28 24 22 20 19 15 14 9</canonical_bands>
                <polymorphic_bands>148 122 109 107 69 62 48 43 39 38 35 29 28 24 22 20 19 15 14 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCTAGGGTTGAAATATTCATT</pcr_primer_p1>
		<pcr_primer_p2>AAATGCTATTTTTGGCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTTGGAGCTTCAAAATCCCAATTTTTTAATCGAAGATATCAACTTTAGAGCTATAAAATCGTAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTTGGAGCTTCAAAATCCCMATTTTTTAATCGAAGATATCAACTTTAGAGCTATAAAATCGTAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32695</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>257567</contig_pos>
        <strand>+</strand>
        <context>AATCGAAGAT[A/T]TCAACTTTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAAAATACCCATTTTGGAGCTTCAAAATCCCAATTTTTTAATCGAAGAT</left_flank>
        <right_flank>TCAACTTTAGAGCTATAAAATCGTAATTTCAAGGCTGTCAAAATACCAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACAACTTACATTATCCGATTGTCCCAATGGTGCTGACGATGTAGACGTCGACGATGAATTCGTCGTTGTAGAAGGCGTCACTGGCTTCTGACTCTGCTGTATCATTGCCTGATTAGCAGCGATCGCAGCGGCTCGTGGAGCACGTCCAGATGGTGATGGAAGGAGAGTGGTGGTGGATGATGGCTGGGTTGTTGGAGCAGCTGGAATTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTTGGAGCTTCAAAATCCCAATTTTTTAATCGAAGATATCAACTTTAGAGCTATAAAATCGTAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGTGCTTAAAAATCCTCATTTCTGAGATTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGAAATTACCCTTGTTTGAGCCCTAAAATCGTATTTTTAAGTCTGAAAATACTTATTTTTCCATACTTGTAAAATTCCGGGCCGGCCCGCCAAAGCCCGGGCCCGGGCCGGGCCTGAGGAAATTTTCAAGGCCCGGGCCCGGCCCGGAAGGCCCGGTGTCAAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTTTCCATTTTTTTTCGTATTTC</canonical>
            <polymorphic>GAACAACTTACATTATCCGATTGTCCCAATGGTGCTGACGATGTAGACGTCGACGATGAATTCGTCGTTGTAGAAGGCGTCACTGGCTTCTGACTCTGCTGTATCATTGCCTGATTAGCAGCGATCGCAGCGGCTCGTGGAGCACGTCCAGATGGTGATGGAAGGAGAGTGGTGGTGGATGATGGCTGGGTTGTTGGAGCAGCTGGAATTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTTGGAGCTTCAAAATCCCAATTTTTTAATCGAAGATWTCAACTTTAGAGCTATAAAATCGTAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGTGCTTAAAAATCCTCATTTCTGAGATTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGAAATTACCCTTGTTTGAGCCCTAAAATCGTATTTTTAAGTCTGAAAATACTTATTTTTCCATACTTGTAAAATTCCGGGCCGGCCCGCCAAAGCCCGGGCCCGGGCCGGGCCTGAGGAAATTTTCAAGGCCCGGGCCCGGCCCGGAAGGCCCGGTGTCAAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTTTCCATTTTTTTTCGTATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCTAGGGTTGAAATATTCATT</pcr_primer_p1>
		<pcr_primer_p2>AAATGCTATTTTTGGCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTTGGAGCTTCAAAATCCCAATTTTTTAATCGAAGATATCAACTTTAGAGCTATAAAATCGTAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTTGGAGCTTCAAAATCCCAATTTTTTAATCGAAGATWTCAACTTTAGAGCTATAAAATCGTAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32696</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>257663</contig_pos>
        <strand>+</strand>
        <context>TACTCATTTT[C/T]GTWCTTAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTT</left_flank>
        <right_flank>GTGCTTAAAAATCCTCATTTCTGAGATTAGAAATCGTATTTTCTGGACCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTGTATCATTGCCTGATTAGCAGCGATCGCAGCGGCTCGTGGAGCACGTCCAGATGGTGATGGAAGGAGAGTGGTGGTGGATGATGGCTGGGTTGTTGGAGCAGCTGGAATTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTTGGAGCTTCAAAATCCCAATTTTTTAATCGAAGATATCAACTTTAGAGCTATAAAATCGTAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGTGCTTAAAAATCCTCATTTCTGAGATTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGAAATTACCCTTGTTTGAGCCCTAAAATCGTATTTTTAAGTCTGAAAATACTTATTTTTCCATACTTGTAAAATTCCGGGCCGGCCCGCCAAAGCCCGGGCCCGGGCCGGGCCTGAGGAAATTTTCAAGGCCCGGGCCCGGCCCGGAAGGCCCGGTGTCAAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTTTCCATTTTTTTTCGTATTTCGGATTGTTTGTCTGTCTGATCAAAAAAGATCGAAAAACTCGAAAAAATATTCTTTGGTCGAAAAAAATCACATAAGGGTCCCCCCTTATGTGTTCT</canonical>
            <polymorphic>TGCTGTATCATTGCCTGATTAGCAGCGATCGCAGCGGCTCGTGGAGCACGTCCAGATGGTGATGGAAGGAGAGTGGTGGTGGATGATGGCTGGGTTGTTGGAGCAGCTGGAATTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTTGGAGCTTCAAAATCCCAATTTTTTAATCGAAGATATCAACTTTAGAGCTATAAAATCGTAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTYGTGCTTAAAAATCCTCATTTCTGAGATTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGAAATTACCCTTGTTTGAGCCCTAAAATCGTATTTTTAAGTCTGAAAATACTTATTTTTCCATACTTGTAAAATTCCGGGCCGGCCCGCCAAAGCCCGGGCCCGGGCCGGGCCTGAGGAAATTTTCAAGGCCCGGGCCCGGCCCGGAAGGCCCGGTGTCAAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTTTCCATTTTTTTTCGTATTTCGGATTGTTTGTCTGTCTGATCAAAAAAGATCGAAAAACTCGAAAAAATATTCTTTGGTCGAAAAAAATCACATAAGGGTCCCCCCTTATGTGTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATTTCAAGGCTGTCAAAATAC</pcr_primer_p1>
		<pcr_primer_p2>TCAGACCTGAAAGTACGATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGTGCTTAAAAATCCTCATTTCTGAGATTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGA</canonical_amplicon>
		<polymorphic_amplicon>TAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTYGTGCTTAAAAATCCTCATTTCTGAGATTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32697</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>257666</contig_pos>
        <strand>+</strand>
        <context>TCATTTTYGT[A/T]CTTAAAAATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGT</left_flank>
        <right_flank>CTTAAAAATCCTCATTTCTGAGATTAGAAATCGTATTTTCTGGACCGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTATCATTGCCTGATTAGCAGCGATCGCAGCGGCTCGTGGAGCACGTCCAGATGGTGATGGAAGGAGAGTGGTGGTGGATGATGGCTGGGTTGTTGGAGCAGCTGGAATTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTTGGAGCTTCAAAATCCCAATTTTTTAATCGAAGATATCAACTTTAGAGCTATAAAATCGTAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGTGCTTAAAAATCCTCATTTCTGAGATTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGAAATTACCCTTGTTTGAGCCCTAAAATCGTATTTTTAAGTCTGAAAATACTTATTTTTCCATACTTGTAAAATTCCGGGCCGGCCCGCCAAAGCCCGGGCCCGGGCCGGGCCTGAGGAAATTTTCAAGGCCCGGGCCCGGCCCGGAAGGCCCGGTGTCAAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTTTCCATTTTTTTTCGTATTTCGGATTGTTTGTCTGTCTGATCAAAAAAGATCGAAAAACTCGAAAAAATATTCTTTGGTCGAAAAAAATCACATAAGGGTCCCCCCTTATGTGTTCTTTT</canonical>
            <polymorphic>TGTATCATTGCCTGATTAGCAGCGATCGCAGCGGCTCGTGGAGCACGTCCAGATGGTGATGGAAGGAGAGTGGTGGTGGATGATGGCTGGGTTGTTGGAGCAGCTGGAATTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTTGGAGCTTCAAAATCCCAATTTTTTAATCGAAGATATCAACTTTAGAGCTATAAAATCGTAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGTWCTTAAAAATCCTCATTTCTGAGATTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGAAATTACCCTTGTTTGAGCCCTAAAATCGTATTTTTAAGTCTGAAAATACTTATTTTTCCATACTTGTAAAATTCCGGGCCGGCCCGCCAAAGCCCGGGCCCGGGCCGGGCCTGAGGAAATTTTCAAGGCCCGGGCCCGGCCCGGAAGGCCCGGTGTCAAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTTTCCATTTTTTTTCGTATTTCGGATTGTTTGTCTGTCTGATCAAAAAAGATCGAAAAACTCGAAAAAATATTCTTTGGTCGAAAAAAATCACATAAGGGTCCCCCCTTATGTGTTCTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>330 225 141 87 65 45 40 22 14 13 7 5 3 3</canonical_bands>
                <polymorphic_bands>555 141 87 65 45 40 22 14 13 7 5 3 3</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATTTCAAGGCTGTCAAAATAC</pcr_primer_p1>
		<pcr_primer_p2>TCAGACCTGAAAGTACGATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGTGCTTAAAAATCCTCATTTCTGAGATTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGA</canonical_amplicon>
		<polymorphic_amplicon>TAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGTWCTTAAAAATCCTCATTTCTGAGATTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32698</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>257689</contig_pos>
        <strand></strand>
        <context>CATTTCTGAG[A/C]MTAGAAATCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCAGAGCTTAAAATACTCATTTTTGTGCTTAAAAATCCTCATTTCTGAG</left_flank>
        <right_flank>TTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCGCAGCGGCTCGTGGAGCACGTCCAGATGGTGATGGAAGGAGAGTGGTGGTGGATGATGGCTGGGTTGTTGGAGCAGCTGGAATTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTTGGAGCTTCAAAATCCCAATTTTTTAATCGAAGATATCAACTTTAGAGCTATAAAATCGTAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGTGCTTAAAAATCCTCATTTCTGAGATTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGAAATTACCCTTGTTTGAGCCCTAAAATCGTATTTTTAAGTCTGAAAATACTTATTTTTCCATACTTGTAAAATTCCGGGCCGGCCCGCCAAAGCCCGGGCCCGGGCCGGGCCTGAGGAAATTTTCAAGGCCCGGGCCCGGCCCGGAAGGCCCGGTGTCAAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTTTCCATTTTTTTTCGTATTTCGGATTGTTTGTCTGTCTGATCAAAAAAGATCGAAAAACTCGAAAAAATATTCTTTGGTCGAAAAAAATCACATAAGGGTCCCCCCTTATGTGTTCTTTTGAAAATTTCGAAACTAGTGAAAT</canonical>
            <polymorphic>GATCGCAGCGGCTCGTGGAGCACGTCCAGATGGTGATGGAAGGAGAGTGGTGGTGGATGATGGCTGGGTTGTTGGAGCAGCTGGAATTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTTGGAGCTTCAAAATCCCAATTTTTTAATCGAAGATATCAACTTTAGAGCTATAAAATCGTAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGTGCTTAAAAATCCTCATTTCTGAGMTTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGAAATTACCCTTGTTTGAGCCCTAAAATCGTATTTTTAAGTCTGAAAATACTTATTTTTCCATACTTGTAAAATTCCGGGCCGGCCCGCCAAAGCCCGGGCCCGGGCCGGGCCTGAGGAAATTTTCAAGGCCCGGGCCCGGCCCGGAAGGCCCGGTGTCAAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTTTCCATTTTTTTTCGTATTTCGGATTGTTTGTCTGTCTGATCAAAAAAGATCGAAAAACTCGAAAAAATATTCTTTGGTCGAAAAAAATCACATAAGGGTCCCCCCTTATGTGTTCTTTTGAAAATTTCGAAACTAGTGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATTTCAAGGCTGTCAAAATAC</pcr_primer_p1>
		<pcr_primer_p2>TCAGACCTGAAAGTACGATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGTGCTTAAAAATCCTCATTTCTGAGATTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGA</canonical_amplicon>
		<polymorphic_amplicon>TAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGTGCTTAAAAATCCTCATTTCTGAGMTTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32699</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>257690</contig_pos>
        <strand>+</strand>
        <context>ATTTCTGAGM[A/C]TAGAAATCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCAGAGCTTAAAATACTCATTTTTGTGCTTAAAAATCCTCATTTCTGAGA</left_flank>
        <right_flank>TAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGCAGCGGCTCGTGGAGCACGTCCAGATGGTGATGGAAGGAGAGTGGTGGTGGATGATGGCTGGGTTGTTGGAGCAGCTGGAATTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTTGGAGCTTCAAAATCCCAATTTTTTAATCGAAGATATCAACTTTAGAGCTATAAAATCGTAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGTGCTTAAAAATCCTCATTTCTGAGATTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGAAATTACCCTTGTTTGAGCCCTAAAATCGTATTTTTAAGTCTGAAAATACTTATTTTTCCATACTTGTAAAATTCCGGGCCGGCCCGCCAAAGCCCGGGCCCGGGCCGGGCCTGAGGAAATTTTCAAGGCCCGGGCCCGGCCCGGAAGGCCCGGTGTCAAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTTTCCATTTTTTTTCGTATTTCGGATTGTTTGTCTGTCTGATCAAAAAAGATCGAAAAACTCGAAAAAATATTCTTTGGTCGAAAAAAATCACATAAGGGTCCCCCCTTATGTGTTCTTTTGAAAATTTCGAAACTAGTGAAATG</canonical>
            <polymorphic>ATCGCAGCGGCTCGTGGAGCACGTCCAGATGGTGATGGAAGGAGAGTGGTGGTGGATGATGGCTGGGTTGTTGGAGCAGCTGGAATTTCAGATTTTGTGGATTTTTAGTTAAAAAATCGTAAATTTAGAGTTGAAAATACCTAGTTTTGAGCTCGAAAATCGTATTTTCAGACCCTAAATCGCCCACTTTGAGCTCAAGAAACGTCGTATTTCTAGGGTTGAAATATTCATTTTTAAGCCTAAAATTAGTGTTTTCAAGGCTTAAAAATCAGAATTTTCGAGCCGAAAATACCCAATTTTCAGCCTTGAAACCGTATTTTTAGGTCTGAAAATACCCATTTTGGAGCTTCAAAATCCCAATTTTTTAATCGAAGATATCAACTTTAGAGCTATAAAATCGTAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGTGCTTAAAAATCCTCATTTCTGAGAMTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGAAATTACCCTTGTTTGAGCCCTAAAATCGTATTTTTAAGTCTGAAAATACTTATTTTTCCATACTTGTAAAATTCCGGGCCGGCCCGCCAAAGCCCGGGCCCGGGCCGGGCCTGAGGAAATTTTCAAGGCCCGGGCCCGGCCCGGAAGGCCCGGTGTCAAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTTTCCATTTTTTTTCGTATTTCGGATTGTTTGTCTGTCTGATCAAAAAAGATCGAAAAACTCGAAAAAATATTCTTTGGTCGAAAAAAATCACATAAGGGTCCCCCCTTATGTGTTCTTTTGAAAATTTCGAAACTAGTGAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATTTCAAGGCTGTCAAAATAC</pcr_primer_p1>
		<pcr_primer_p2>TCAGACCTGAAAGTACGATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGTGCTTAAAAATCCTCATTTCTGAGATTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGA</canonical_amplicon>
		<polymorphic_amplicon>TAATTTCAAGGCTGTCAAAATACCAAATTTTCAGCCAAAAATAGCATTTTCAGAGCTTAAAATACTCATTTTTGTGCTTAAAAATCCTCATTTCTGAGAMTAGAAATCGTATTTTCTGGACCGAAAAAAAACCAAATTTTGAGCTTAAAAATTGCATTTTAGGTATGAAAATATGATTTTTAAGCTCCAATTGTCATTTTCCGCTCAAAAATATCAAATTTTGAGCCTTAAAATCGTACTTTCAGGTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32700</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>264311</contig_pos>
        <strand>+</strand>
        <context>ATTTTTGGAT[A/G]ATTTTTTCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGAT</left_flank>
        <right_flank>ATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTTGGTCGATTTTTGTGAATTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGATAATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTGGGTCAATTTTACTAATTTTTGGGTCATTTTCCATGGAATCTAGGTCAAATTTTACGATTTTTGGATCAATTTTTGGAATTTTAGAGTATTTTCACTGAACTTTTCAGTGAAAAATGAAAATTTGGACCATTTTTAGGCGAATTTTTCTCTTATTTTAAAGCCAATTTTAGTGATTTTAAGGTAATTTCACTGATTTTTGATGTCATTTTGAGCAATTTAAGACATTTTTCAAGTGGATTTTAGTTCATTTTTGGTCAAAAATGACACTTTTCGAGGCGATTTTAGTGATTTTTGGGAAATTTTAGTCATTTTTGAGTAGTTTTTTCTGATTTTTGGGTCATTTTCCATGGAATCTAGGTCAAATTTTACGATTTTTGGGGTTTTTCTCTCGTACCATCATCATCCTCCTCGTCCATCAACATCAACTCGTGCTCTTTCTGTGCCTGAGCG</canonical>
            <polymorphic>AGAATTTGGGTTCAAAAATGAGAAATTTAGCACATTTCAAGTCTGGAAGTGACCATTTTTGCATAGAAAATGACATTTTTCAGCCTAAACATGAGCAATTTCGCCTATTTTTTACCTGAAAATGGCATTTTTCAGAGGTTTTAGCACATGAAACAGACATTTTTGGCTCAATTTCGTCTATTATTTGTCTGGAAATAACCTTTTCAGGGACATTTTTGAGATTTTTAGCATAGAAAATTACAATTTTAGGCATAATTTCGACTACTTTTGACCTGAAAAGTCCGTTTTTTGAGTCAAAAACCTCGATTTCTGGGGTTTAAAGCTTACCGTAAGCACTAGATCATCCAGTTTTCCGTACTTCTCAGCTGCTCGAATCACACGTCGTTGTGCCATATCAGTGGGTAGTTCTGGAGAACGATTTTAGGTGATTTTTGGTCGATTTTTGTGAATTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGATRATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTGGGTCAATTTTACTAATTTTTGGGTCATTTTCCATGGAATCTAGGTCAAATTTTACGATTTTTGGATCAATTTTTGGAATTTTAGAGTATTTTCACTGAACTTTTCAGTGAAAAATGAAAATTTGGACCATTTTTAGGCGAATTTTTCTCTTATTTTAAAGCCAATTTTAGTGATTTTAAGGTAATTTCACTGATTTTTGATGTCATTTTGAGCAATTTAAGACATTTTTCAAGTGGATTTTAGTTCATTTTTGGTCAAAAATGACACTTTTCGAGGCGATTTTAGTGATTTTTGGGAAATTTTAGTCATTTTTGAGTAGTTTTTTCTGATTTTTGGGTCATTTTCCATGGAATCTAGGTCAAATTTTACGATTTTTGGGGTTTTTCTCTCGTACCATCATCATCCTCCTCGTCCATCAACATCAACTCGTGCTCTTTCTGTGCCTGAGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>194 89 84 73 73 66 64 42 34 32 31 23 21 21 20 20 20 20 13 12 10 9 9 8 6 4 2</canonical_bands>
                <polymorphic_bands>194 89 84 73 73 66 64 42 40 34 32 31 23 21 21 20 20 13 12 10 9 9 8 6 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAGTCGAAAATGACACT</pcr_primer_p1>
		<pcr_primer_p2>TGACCCAAAAATCAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>441</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGATAATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTGGGTCAATTTTACTAATTTTTGGGTCATTTTCCATGGAATCTAGGTCAAATTTTACGATTTTTGGATCAATTTTTGGAATTTTAGAGTATTTTCACTGAACTTTTCAGTGAAAAATGAAAATTTGGACCATTTTTAGGCGAATTTTTCTCTTATTTTAAAGCCAATTTTAGTGATTTTAAGGTAATTTCACTGATTTTTGATGTCATTTTGAGCAATTTAAGACATTTTTCAAGTGGATTTTAGTTCATTTTTGGTCAAAAATGACACTTTTCGAGGCGATTTTAGTGATTTTTGGGAAATTTTAGTCATTTTTGAGTAGTTTTTTCTGATTTTTGGGTCA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAGTCGAAAATGACACTTTTTGGGGCAATTTTAATGATTTTTGGATRATTTTTTCTCTAAAAATCGAATTTAATAATTAATTTTTGTAAATTTTCTGGGTCAATTTTACTAATTTTTGGGTCATTTTCCATGGAATCTAGGTCAAATTTTACGATTTTTGGATCAATTTTTGGAATTTTAGAGTATTTTCACTGAACTTTTCAGTGAAAAATGAAAATTTGGACCATTTTTAGGCGAATTTTTCTCTTATTTTAAAGCCAATTTTAGTGATTTTAAGGTAATTTCACTGATTTTTGATGTCATTTTGAGCAATTTAAGACATTTTTCAAGTGGATTTTAGTTCATTTTTGGTCAAAAATGACACTTTTCGAGGCGATTTTAGTGATTTTTGGGAAATTTTAGTCATTTTTGAGTAGTTTTTTCTGATTTTTGGGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32701</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>306091</contig_pos>
        <strand></strand>
        <context>aaaactgatt[C/T]agaactctca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGCCATAACTAGCTTCAAAATTGATATTTTTCCAATCTAAAAACTGATT</left_flank>
        <right_flank>AGAACTCTCAAAACATGCTCTTTCATATACATCGTGGCCTAACTTTTGGG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTAGGATTTTTGAAAATTCTTTGCAGATTTTGAACATTTCTAGGTCATTTTAGAATTTTTCGGAAAAAAAATTTTTTTTTTCAAAAAAATTGGAATTTTCCAGAAAATGGCAAGTACCAAAATGTTGGACACATCAGATAAGACGAAAATTATCAGCGATGGAATGGCGATTGTGGACCAATGGATGGGCGGAGTCGACTTATTTGAAGATGTTAGTGTGATTATTCAGATTCGGAAACCCACTATTTTGAAGCTTGTTATGCGTGGCGGCCTAGAAATCCAAATTTTGCAAATTGGGCCAATGTGTACATGGTTCGAAAGAGCATGATGTGACAGTTCTATATCAGTTTTTAAATTCAAAAAATATCGAATTTGAAGCGAGTTATGCTCATTTCAAATTTGGGACGATATGGCCTAGTTTTGGGTTTCTAGGCCACCAAACGAAAATGGCCATAACTAGCTTCAAAATTGATATTTTTCCAATCTAAAAACTGATTCAGAACTCTCAAAACATGCTCTTTCATATACATCGTGGCCTAACTTTTGGGGACTTTTGGATTTCTAGGCCATCAACTTTTTTTTGAAAATTATTATTTTTTTGGGATTTTTGCATTGAAATTTTTTTTTGGAATATTTAGAAATTAAAAAAAATGATGGCCTAACTAAGGGATTTCTAGGCCACCAATTTTTTTCAAAATTTTAACAAAATAACGTTTCAGATTTCAACTGAAAATGCCAAGAATACGGTAATGAAGGGACGGGACGCGAACGTTTTGTTGAAATGTGAGCTCTGTGATATTTCAATGACCGGGAAGGATAATTGGTGGGAATTTTGGAAATTTAAGGATTTTTGAATTTTTGAATTTTTGAATTTTTCGAAAATTTCAATTTATTCCAAATTTCGCATTATTTGATTTTCCAGGCAACGACATATCGATGGAAAGAAGCACAAGCGCAATGTGAAGAAGGCCAAGGAGCAGCAGCCGAATTTGGGATAA</canonical>
            <polymorphic>ATTTAGGATTTTTGAAAATTCTTTGCAGATTTTGAACATTTCTAGGTCATTTTAGAATTTTTCGGAAAAAAAATTTTTTTTTTCAAAAAAATTGGAATTTTCCAGAAAATGGCAAGTACCAAAATGTTGGACACATCAGATAAGACGAAAATTATCAGCGATGGAATGGCGATTGTGGACCAATGGATGGGCGGAGTCGACTTATTTGAAGATGTTAGTGTGATTATTCAGATTCGGAAACCCACTATTTTGAAGCTTGTTATGCGTGGCGGCCTAGAAATCCAAATTTTGCAAATTGGGCCAATGTGTACATGGTTCGAAAGAGCATGATGTGACAGTTCTATATCAGTTTTTAAATTCAAAAAATATCGAATTTGAAGCGAGTTATGCTCATTTCAAATTTGGGACGATATGGCCTAGTTTTGGGTTTCTAGGCCACCAAACGAAAATGGCCATAACTAGCTTCAAAATTGATATTTTTCCAATCTAAAAACTGATTYAGAACTCTCAAAACATGCTCTTTCATATACATCGTGGCCTAACTTTTGGGGACTTTTGGATTTCTAGGCCATCAACTTTTTTTTGAAAATTATTATTTTTTTGGGATTTTTGCATTGAAATTTTTTTTTGGAATATTTAGAAATTAAAAAAAATGATGGCCTAACTAAGGGATTTCTAGGCCACCAATTTTTTTCAAAATTTTAACAAAATAACGTTTCAGATTTCAACTGAAAATGCCAAGAATACGGTAATGAAGGGACGGGACGCGAACGTTTTGTTGAAATGTGAGCTCTGTGATATTTCAATGACCGGGAAGGATAATTGGTGGGAATTTTGGAAATTTAAGGATTTTTGAATTTTTGAATTTTTGAATTTTTCGAAAATTTCAATTTATTCCAAATTTCGCATTATTTGATTTTCCAGGCAACGACATATCGATGGAAAGAAGCACAAGCGCAATGTGAAGAAGGCCAAGGAGCAGCAGCCGAATTTGGGATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>504 265 194 37</canonical_bands>
                <polymorphic_bands>769 194 37</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>280 265 219 92 74 64 6</canonical_bands>
                <polymorphic_bands>484 280 92 74 64 6</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>504 265 231</canonical_bands>
                <polymorphic_bands>769 231</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGACTTATTTGAAGATGTTAGTG</pcr_primer_p1>
		<pcr_primer_p2>CCTTAGTTAGGCCATCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>474</pcr_amplicon_size>
		<canonical_amplicon>TCGACTTATTTGAAGATGTTAGTGTGATTATTCAGATTCGGAAACCCACTATTTTGAAGCTTGTTATGCGTGGCGGCCTAGAAATCCAAATTTTGCAAATTGGGCCAATGTGTACATGGTTCGAAAGAGCATGATGTGACAGTTCTATATCAGTTTTTAAATTCAAAAAATATCGAATTTGAAGCGAGTTATGCTCATTTCAAATTTGGGACGATATGGCCTAGTTTTGGGTTTCTAGGCCACCAAACGAAAATGGCCATAACTAGCTTCAAAATTGATATTTTTCCAATCTAAAAACTGATTCAGAACTCTCAAAACATGCTCTTTCATATACATCGTGGCCTAACTTTTGGGGACTTTTGGATTTCTAGGCCATCAACTTTTTTTTGAAAATTATTATTTTTTTGGGATTTTTGCATTGAAATTTTTTTTTGGAATATTTAGAAATTAAAAAAAATGATGGCCTAACTAAGG</canonical_amplicon>
		<polymorphic_amplicon>TCGACTTATTTGAAGATGTTAGTGTGATTATTCAGATTCGGAAACCCACTATTTTGAAGCTTGTTATGCGTGGCGGCCTAGAAATCCAAATTTTGCAAATTGGGCCAATGTGTACATGGTTCGAAAGAGCATGATGTGACAGTTCTATATCAGTTTTTAAATTCAAAAAATATCGAATTTGAAGCGAGTTATGCTCATTTCAAATTTGGGACGATATGGCCTAGTTTTGGGTTTCTAGGCCACCAAACGAAAATGGCCATAACTAGCTTCAAAATTGATATTTTTCCAATCTAAAAACTGATTYAGAACTCTCAAAACATGCTCTTTCATATACATCGTGGCCTAACTTTTGGGGACTTTTGGATTTCTAGGCCATCAACTTTTTTTTGAAAATTATTATTTTTTTGGGATTTTTGCATTGAAATTTTTTTTTGGAATATTTAGAAATTAAAAAAAATGATGGCCTAACTAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32702</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>306294</contig_pos>
        <strand>+</strand>
        <context>TTCAAAATTT[C/T]AACAAAATAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGATGGCCTAACTAAGGGATTTCTAGGCCACCAATTTTTTTCAAAATTT</left_flank>
        <right_flank>AACAAAATAACGTTTCAGATTTCAACTGAAAATGCCAAGAATACGGTAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTGAAGATGTTAGTGTGATTATTCAGATTCGGAAACCCACTATTTTGAAGCTTGTTATGCGTGGCGGCCTAGAAATCCAAATTTTGCAAATTGGGCCAATGTGTACATGGTTCGAAAGAGCATGATGTGACAGTTCTATATCAGTTTTTAAATTCAAAAAATATCGAATTTGAAGCGAGTTATGCTCATTTCAAATTTGGGACGATATGGCCTAGTTTTGGGTTTCTAGGCCACCAAACGAAAATGGCCATAACTAGCTTCAAAATTGATATTTTTCCAATCTAAAAACTGATTCAGAACTCTCAAAACATGCTCTTTCATATACATCGTGGCCTAACTTTTGGGGACTTTTGGATTTCTAGGCCATCAACTTTTTTTTGAAAATTATTATTTTTTTGGGATTTTTGCATTGAAATTTTTTTTTGGAATATTTAGAAATTAAAAAAAATGATGGCCTAACTAAGGGATTTCTAGGCCACCAATTTTTTTCAAAATTTTAACAAAATAACGTTTCAGATTTCAACTGAAAATGCCAAGAATACGGTAATGAAGGGACGGGACGCGAACGTTTTGTTGAAATGTGAGCTCTGTGATATTTCAATGACCGGGAAGGATAATTGGTGGGAATTTTGGAAATTTAAGGATTTTTGAATTTTTGAATTTTTGAATTTTTCGAAAATTTCAATTTATTCCAAATTTCGCATTATTTGATTTTCCAGGCAACGACATATCGATGGAAAGAAGCACAAGCGCAATGTGAAGAAGGCCAAGGAGCAGCAGCCGAATTTGGGATAATTCGATTTTTTTTTAAATTATTTTTTTTTGTTTGGTTGAAAATTGTTCTGTTTCTTATTTTATCTATTTATTTTGTCAATAAAAATTAGTTCTTTTTGGTTTTTTTACAAAACTTTTCTTTTAAAAATTGACCCTAACAAAGGAAATTCGGGAAAATTTGAGGGCTCAACTTCGATTTAATTTAACTCGGTTACTGTAAGAGA</canonical>
            <polymorphic>ATTTGAAGATGTTAGTGTGATTATTCAGATTCGGAAACCCACTATTTTGAAGCTTGTTATGCGTGGCGGCCTAGAAATCCAAATTTTGCAAATTGGGCCAATGTGTACATGGTTCGAAAGAGCATGATGTGACAGTTCTATATCAGTTTTTAAATTCAAAAAATATCGAATTTGAAGCGAGTTATGCTCATTTCAAATTTGGGACGATATGGCCTAGTTTTGGGTTTCTAGGCCACCAAACGAAAATGGCCATAACTAGCTTCAAAATTGATATTTTTCCAATCTAAAAACTGATTCAGAACTCTCAAAACATGCTCTTTCATATACATCGTGGCCTAACTTTTGGGGACTTTTGGATTTCTAGGCCATCAACTTTTTTTTGAAAATTATTATTTTTTTGGGATTTTTGCATTGAAATTTTTTTTTGGAATATTTAGAAATTAAAAAAAATGATGGCCTAACTAAGGGATTTCTAGGCCACCAATTTTTTTCAAAATTTYAACAAAATAACGTTTCAGATTTCAACTGAAAATGCCAAGAATACGGTAATGAAGGGACGGGACGCGAACGTTTTGTTGAAATGTGAGCTCTGTGATATTTCAATGACCGGGAAGGATAATTGGTGGGAATTTTGGAAATTTAAGGATTTTTGAATTTTTGAATTTTTGAATTTTTCGAAAATTTCAATTTATTCCAAATTTCGCATTATTTGATTTTCCAGGCAACGACATATCGATGGAAAGAAGCACAAGCGCAATGTGAAGAAGGCCAAGGAGCAGCAGCCGAATTTGGGATAATTCGATTTTTTTTTAAATTATTTTTTTTTGTTTGGTTGAAAATTGTTCTGTTTCTTATTTTATCTATTTATTTTGTCAATAAAAATTAGTTCTTTTTGGTTTTTTTACAAAACTTTTCTTTTAAAAATTGACCCTAACAAAGGAAATTCGGGAAAATTTGAGGGCTCAACTTCGATTTAATTTAACTCGGTTACTGTAAGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>291 170 150 141 108 58 56 21 5</canonical_bands>
                <polymorphic_bands>291 199 170 150 108 56 21 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGACTTATTTGAAGATGTTAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCCTTCATTACCGTATTCTT</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>TTAACAAAATAACGTTTCAGATTTCAACTGAAAATGCCAAGAATACGGTAATGAAGGGA</canonical_amplicon>
		<polymorphic_amplicon>TYAACAAAATAACGTTTCAGATTTCAACTGAAAATGCCAAGAATACGGTAATGAAGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32703</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>306330</contig_pos>
        <strand>+</strand>
        <context>CTGAAAATGC[C/G]AAGAATACGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTTTCAAAATTTTAACAAAATAACGTTTCAGATTTCAACTGAAAATGC</left_flank>
        <right_flank>AAGAATACGGTAATGAAGGGACGGGACGCGAACGTTTTGTTGAAATGTGA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCCACTATTTTGAAGCTTGTTATGCGTGGCGGCCTAGAAATCCAAATTTTGCAAATTGGGCCAATGTGTACATGGTTCGAAAGAGCATGATGTGACAGTTCTATATCAGTTTTTAAATTCAAAAAATATCGAATTTGAAGCGAGTTATGCTCATTTCAAATTTGGGACGATATGGCCTAGTTTTGGGTTTCTAGGCCACCAAACGAAAATGGCCATAACTAGCTTCAAAATTGATATTTTTCCAATCTAAAAACTGATTCAGAACTCTCAAAACATGCTCTTTCATATACATCGTGGCCTAACTTTTGGGGACTTTTGGATTTCTAGGCCATCAACTTTTTTTTGAAAATTATTATTTTTTTGGGATTTTTGCATTGAAATTTTTTTTTGGAATATTTAGAAATTAAAAAAAATGATGGCCTAACTAAGGGATTTCTAGGCCACCAATTTTTTTCAAAATTTTAACAAAATAACGTTTCAGATTTCAACTGAAAATGCCAAGAATACGGTAATGAAGGGACGGGACGCGAACGTTTTGTTGAAATGTGAGCTCTGTGATATTTCAATGACCGGGAAGGATAATTGGTGGGAATTTTGGAAATTTAAGGATTTTTGAATTTTTGAATTTTTGAATTTTTCGAAAATTTCAATTTATTCCAAATTTCGCATTATTTGATTTTCCAGGCAACGACATATCGATGGAAAGAAGCACAAGCGCAATGTGAAGAAGGCCAAGGAGCAGCAGCCGAATTTGGGATAATTCGATTTTTTTTTAAATTATTTTTTTTTGTTTGGTTGAAAATTGTTCTGTTTCTTATTTTATCTATTTATTTTGTCAATAAAAATTAGTTCTTTTTGGTTTTTTTACAAAACTTTTCTTTTAAAAATTGACCCTAACAAAGGAAATTCGGGAAAATTTGAGGGCTCAACTTCGATTTAATTTAACTCGGTTACTGTAAGAGATATCGGAAAGTGGTTAACTAAGAAAATGTTTATTAA</canonical>
            <polymorphic>ACCCACTATTTTGAAGCTTGTTATGCGTGGCGGCCTAGAAATCCAAATTTTGCAAATTGGGCCAATGTGTACATGGTTCGAAAGAGCATGATGTGACAGTTCTATATCAGTTTTTAAATTCAAAAAATATCGAATTTGAAGCGAGTTATGCTCATTTCAAATTTGGGACGATATGGCCTAGTTTTGGGTTTCTAGGCCACCAAACGAAAATGGCCATAACTAGCTTCAAAATTGATATTTTTCCAATCTAAAAACTGATTCAGAACTCTCAAAACATGCTCTTTCATATACATCGTGGCCTAACTTTTGGGGACTTTTGGATTTCTAGGCCATCAACTTTTTTTTGAAAATTATTATTTTTTTGGGATTTTTGCATTGAAATTTTTTTTTGGAATATTTAGAAATTAAAAAAAATGATGGCCTAACTAAGGGATTTCTAGGCCACCAATTTTTTTCAAAATTTTAACAAAATAACGTTTCAGATTTCAACTGAAAATGCSAAGAATACGGTAATGAAGGGACGGGACGCGAACGTTTTGTTGAAATGTGAGCTCTGTGATATTTCAATGACCGGGAAGGATAATTGGTGGGAATTTTGGAAATTTAAGGATTTTTGAATTTTTGAATTTTTGAATTTTTCGAAAATTTCAATTTATTCCAAATTTCGCATTATTTGATTTTCCAGGCAACGACATATCGATGGAAAGAAGCACAAGCGCAATGTGAAGAAGGCCAAGGAGCAGCAGCCGAATTTGGGATAATTCGATTTTTTTTTAAATTATTTTTTTTTGTTTGGTTGAAAATTGTTCTGTTTCTTATTTTATCTATTTATTTTGTCAATAAAAATTAGTTCTTTTTGGTTTTTTTACAAAACTTTTCTTTTAAAAATTGACCCTAACAAAGGAAATTCGGGAAAATTTGAGGGCTCAACTTCGATTTAATTTAACTCGGTTACTGTAAGAGATATCGGAAAGTGGTTAACTAAGAAAATGTTTATTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCTAACTAAGGGATTTCTAGG</pcr_primer_p1>
		<pcr_primer_p2>TAATGCGAAATTTGGAATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GCCTAACTAAGGGATTTCTAGGCCACCAATTTTTTTCAAAATTTTAACAAAATAACGTTTCAGATTTCAACTGAAAATGCCAAGAATACGGTAATGAAGGGACGGGACGCGAACGTTTTGTTGAAATGTGAGCTCTGTGATATTTCAATGACCGGGAAGGATAATTGGTGGGAATTTTGGAAATTTAAGGATTTTTGAATTTTTGAATTTTTGAATTTTTCGAAAATTTCAATTTATTCCAAATTTCGCATTA</canonical_amplicon>
		<polymorphic_amplicon>GCCTAACTAAGGGATTTCTAGGCCACCAATTTTTTTCAAAATTTTAACAAAATAACGTTTCAGATTTCAACTGAAAATGCSAAGAATACGGTAATGAAGGGACGGGACGCGAACGTTTTGTTGAAATGTGAGCTCTGTGATATTTCAATGACCGGGAAGGATAATTGGTGGGAATTTTGGAAATTTAAGGATTTTTGAATTTTTGAATTTTTGAATTTTTCGAAAATTTCAATTTATTCCAAATTTCGCATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32704</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>306372</contig_pos>
        <strand>+</strand>
        <context>ACGTTTTGTT[A/T]AAATGTGAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAATGCCAAGAATACGGTAATGAAGGGACGGGACGCGAACGTTTTGTT</left_flank>
        <right_flank>AAATGTGAGCTCTGTGATATTTCAATGACCGGGAAGGATAATTGGTGGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAATTTTGCAAATTGGGCCAATGTGTACATGGTTCGAAAGAGCATGATGTGACAGTTCTATATCAGTTTTTAAATTCAAAAAATATCGAATTTGAAGCGAGTTATGCTCATTTCAAATTTGGGACGATATGGCCTAGTTTTGGGTTTCTAGGCCACCAAACGAAAATGGCCATAACTAGCTTCAAAATTGATATTTTTCCAATCTAAAAACTGATTCAGAACTCTCAAAACATGCTCTTTCATATACATCGTGGCCTAACTTTTGGGGACTTTTGGATTTCTAGGCCATCAACTTTTTTTTGAAAATTATTATTTTTTTGGGATTTTTGCATTGAAATTTTTTTTTGGAATATTTAGAAATTAAAAAAAATGATGGCCTAACTAAGGGATTTCTAGGCCACCAATTTTTTTCAAAATTTTAACAAAATAACGTTTCAGATTTCAACTGAAAATGCCAAGAATACGGTAATGAAGGGACGGGACGCGAACGTTTTGTTGAAATGTGAGCTCTGTGATATTTCAATGACCGGGAAGGATAATTGGTGGGAATTTTGGAAATTTAAGGATTTTTGAATTTTTGAATTTTTGAATTTTTCGAAAATTTCAATTTATTCCAAATTTCGCATTATTTGATTTTCCAGGCAACGACATATCGATGGAAAGAAGCACAAGCGCAATGTGAAGAAGGCCAAGGAGCAGCAGCCGAATTTGGGATAATTCGATTTTTTTTTAAATTATTTTTTTTTGTTTGGTTGAAAATTGTTCTGTTTCTTATTTTATCTATTTATTTTGTCAATAAAAATTAGTTCTTTTTGGTTTTTTTACAAAACTTTTCTTTTAAAAATTGACCCTAACAAAGGAAATTCGGGAAAATTTGAGGGCTCAACTTCGATTTAATTTAACTCGGTTACTGTAAGAGATATCGGAAAGTGGTTAACTAAGAAAATGTTTATTAAGATGTCAGCAATATTTTGTTAGTTGGCCACTTTTTGATATCT</canonical>
            <polymorphic>CCAAATTTTGCAAATTGGGCCAATGTGTACATGGTTCGAAAGAGCATGATGTGACAGTTCTATATCAGTTTTTAAATTCAAAAAATATCGAATTTGAAGCGAGTTATGCTCATTTCAAATTTGGGACGATATGGCCTAGTTTTGGGTTTCTAGGCCACCAAACGAAAATGGCCATAACTAGCTTCAAAATTGATATTTTTCCAATCTAAAAACTGATTCAGAACTCTCAAAACATGCTCTTTCATATACATCGTGGCCTAACTTTTGGGGACTTTTGGATTTCTAGGCCATCAACTTTTTTTTGAAAATTATTATTTTTTTGGGATTTTTGCATTGAAATTTTTTTTTGGAATATTTAGAAATTAAAAAAAATGATGGCCTAACTAAGGGATTTCTAGGCCACCAATTTTTTTCAAAATTTTAACAAAATAACGTTTCAGATTTCAACTGAAAATGCCAAGAATACGGTAATGAAGGGACGGGACGCGAACGTTTTGTTWAAATGTGAGCTCTGTGATATTTCAATGACCGGGAAGGATAATTGGTGGGAATTTTGGAAATTTAAGGATTTTTGAATTTTTGAATTTTTGAATTTTTCGAAAATTTCAATTTATTCCAAATTTCGCATTATTTGATTTTCCAGGCAACGACATATCGATGGAAAGAAGCACAAGCGCAATGTGAAGAAGGCCAAGGAGCAGCAGCCGAATTTGGGATAATTCGATTTTTTTTTAAATTATTTTTTTTTGTTTGGTTGAAAATTGTTCTGTTTCTTATTTTATCTATTTATTTTGTCAATAAAAATTAGTTCTTTTTGGTTTTTTTACAAAACTTTTCTTTTAAAAATTGACCCTAACAAAGGAAATTCGGGAAAATTTGAGGGCTCAACTTCGATTTAATTTAACTCGGTTACTGTAAGAGATATCGGAAAGTGGTTAACTAAGAAAATGTTTATTAAGATGTCAGCAATATTTTGTTAGTTGGCCACTTTTTGATATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCTAACTAAGGGATTTCTAGG</pcr_primer_p1>
		<pcr_primer_p2>TAATGCGAAATTTGGAATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GCCTAACTAAGGGATTTCTAGGCCACCAATTTTTTTCAAAATTTTAACAAAATAACGTTTCAGATTTCAACTGAAAATGCCAAGAATACGGTAATGAAGGGACGGGACGCGAACGTTTTGTTGAAATGTGAGCTCTGTGATATTTCAATGACCGGGAAGGATAATTGGTGGGAATTTTGGAAATTTAAGGATTTTTGAATTTTTGAATTTTTGAATTTTTCGAAAATTTCAATTTATTCCAAATTTCGCATTA</canonical_amplicon>
		<polymorphic_amplicon>GCCTAACTAAGGGATTTCTAGGCCACCAATTTTTTTCAAAATTTTAACAAAATAACGTTTCAGATTTCAACTGAAAATGCCAAGAATACGGTAATGAAGGGACGGGACGCGAACGTTTTGTTWAAATGTGAGCTCTGTGATATTTCAATGACCGGGAAGGATAATTGGTGGGAATTTTGGAAATTTAAGGATTTTTGAATTTTTGAATTTTTGAATTTTTCGAAAATTTCAATTTATTCCAAATTTCGCATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32705</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>306423</contig_pos>
        <strand></strand>
        <context>ATTGGTGGGA[A/T]TTTTGGAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATGTGAGCTCTGTGATATTTCAATGACCGGGAAGGATAATTGGTGGGA</left_flank>
        <right_flank>TTTTGGAAATTTAAGGATTTTTGAATTTTTGAATTTTTGAATTTTTCGAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACAGTTCTATATCAGTTTTTAAATTCAAAAAATATCGAATTTGAAGCGAGTTATGCTCATTTCAAATTTGGGACGATATGGCCTAGTTTTGGGTTTCTAGGCCACCAAACGAAAATGGCCATAACTAGCTTCAAAATTGATATTTTTCCAATCTAAAAACTGATTCAGAACTCTCAAAACATGCTCTTTCATATACATCGTGGCCTAACTTTTGGGGACTTTTGGATTTCTAGGCCATCAACTTTTTTTTGAAAATTATTATTTTTTTGGGATTTTTGCATTGAAATTTTTTTTTGGAATATTTAGAAATTAAAAAAAATGATGGCCTAACTAAGGGATTTCTAGGCCACCAATTTTTTTCAAAATTTTAACAAAATAACGTTTCAGATTTCAACTGAAAATGCCAAGAATACGGTAATGAAGGGACGGGACGCGAACGTTTTGTTGAAATGTGAGCTCTGTGATATTTCAATGACCGGGAAGGATAATTGGTGGGAATTTTGGAAATTTAAGGATTTTTGAATTTTTGAATTTTTGAATTTTTCGAAAATTTCAATTTATTCCAAATTTCGCATTATTTGATTTTCCAGGCAACGACATATCGATGGAAAGAAGCACAAGCGCAATGTGAAGAAGGCCAAGGAGCAGCAGCCGAATTTGGGATAATTCGATTTTTTTTTAAATTATTTTTTTTTGTTTGGTTGAAAATTGTTCTGTTTCTTATTTTATCTATTTATTTTGTCAATAAAAATTAGTTCTTTTTGGTTTTTTTACAAAACTTTTCTTTTAAAAATTGACCCTAACAAAGGAAATTCGGGAAAATTTGAGGGCTCAACTTCGATTTAATTTAACTCGGTTACTGTAAGAGATATCGGAAAGTGGTTAACTAAGAAAATGTTTATTAAGATGTCAGCAATATTTTGTTAGTTGGCCACTTTTTGATATCTTTCACAGGAGCCGAGATAATTGGGCCCCAAGCGCACTACATCAGAGGTCAC</canonical>
            <polymorphic>TGACAGTTCTATATCAGTTTTTAAATTCAAAAAATATCGAATTTGAAGCGAGTTATGCTCATTTCAAATTTGGGACGATATGGCCTAGTTTTGGGTTTCTAGGCCACCAAACGAAAATGGCCATAACTAGCTTCAAAATTGATATTTTTCCAATCTAAAAACTGATTCAGAACTCTCAAAACATGCTCTTTCATATACATCGTGGCCTAACTTTTGGGGACTTTTGGATTTCTAGGCCATCAACTTTTTTTTGAAAATTATTATTTTTTTGGGATTTTTGCATTGAAATTTTTTTTTGGAATATTTAGAAATTAAAAAAAATGATGGCCTAACTAAGGGATTTCTAGGCCACCAATTTTTTTCAAAATTTTAACAAAATAACGTTTCAGATTTCAACTGAAAATGCCAAGAATACGGTAATGAAGGGACGGGACGCGAACGTTTTGTTGAAATGTGAGCTCTGTGATATTTCAATGACCGGGAAGGATAATTGGTGGGAWTTTTGGAAATTTAAGGATTTTTGAATTTTTGAATTTTTGAATTTTTCGAAAATTTCAATTTATTCCAAATTTCGCATTATTTGATTTTCCAGGCAACGACATATCGATGGAAAGAAGCACAAGCGCAATGTGAAGAAGGCCAAGGAGCAGCAGCCGAATTTGGGATAATTCGATTTTTTTTTAAATTATTTTTTTTTGTTTGGTTGAAAATTGTTCTGTTTCTTATTTTATCTATTTATTTTGTCAATAAAAATTAGTTCTTTTTGGTTTTTTTACAAAACTTTTCTTTTAAAAATTGACCCTAACAAAGGAAATTCGGGAAAATTTGAGGGCTCAACTTCGATTTAATTTAACTCGGTTACTGTAAGAGATATCGGAAAGTGGTTAACTAAGAAAATGTTTATTAAGATGTCAGCAATATTTTGTTAGTTGGCCACTTTTTGATATCTTTCACAGGAGCCGAGATAATTGGGCCCCAAGCGCACTACATCAGAGGTCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>220 178 156 133 89 79 27 23 17 16 16 11 10 9 8 8</canonical_bands>
                <polymorphic_bands>220 178 156 142 89 79 27 23 17 16 16 11 10 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>123 120 119 89 70 44 43 42 34 31 27 25 24 23 23 19 17 16 16 12 11 11 10 10 10 9 8 8 6</canonical_bands>
                <polymorphic_bands>123 120 119 89 70 44 43 42 34 31 27 25 24 23 23 19 19 17 16 16 12 11 11 10 10 8 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCTAACTAAGGGATTTCTAGG</pcr_primer_p1>
		<pcr_primer_p2>TAATGCGAAATTTGGAATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GCCTAACTAAGGGATTTCTAGGCCACCAATTTTTTTCAAAATTTTAACAAAATAACGTTTCAGATTTCAACTGAAAATGCCAAGAATACGGTAATGAAGGGACGGGACGCGAACGTTTTGTTGAAATGTGAGCTCTGTGATATTTCAATGACCGGGAAGGATAATTGGTGGGAATTTTGGAAATTTAAGGATTTTTGAATTTTTGAATTTTTGAATTTTTCGAAAATTTCAATTTATTCCAAATTTCGCATTA</canonical_amplicon>
		<polymorphic_amplicon>GCCTAACTAAGGGATTTCTAGGCCACCAATTTTTTTCAAAATTTTAACAAAATAACGTTTCAGATTTCAACTGAAAATGCCAAGAATACGGTAATGAAGGGACGGGACGCGAACGTTTTGTTGAAATGTGAGCTCTGTGATATTTCAATGACCGGGAAGGATAATTGGTGGGAWTTTTGGAAATTTAAGGATTTTTGAATTTTTGAATTTTTGAATTTTTCGAAAATTTCAATTTATTCCAAATTTCGCATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32706</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>306639</contig_pos>
        <strand>+</strand>
        <context>GAAAATTGTT[C/T]TGTTTCTTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATTCGATTTTTTTTTAAATTATTTTTTTTTGTTTGGTTGAAAATTGTT</left_flank>
        <right_flank>TGTTTCTTATTTTATCTATTTATTTTGTCAATAAAAATTAGTTCTTTTTG</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGACTTTTGGATTTCTAGGCCATCAACTTTTTTTTGAAAATTATTATTTTTTTGGGATTTTTGCATTGAAATTTTTTTTTGGAATATTTAGAAATTAAAAAAAATGATGGCCTAACTAAGGGATTTCTAGGCCACCAATTTTTTTCAAAATTTTAACAAAATAACGTTTCAGATTTCAACTGAAAATGCCAAGAATACGGTAATGAAGGGACGGGACGCGAACGTTTTGTTGAAATGTGAGCTCTGTGATATTTCAATGACCGGGAAGGATAATTGGTGGGAATTTTGGAAATTTAAGGATTTTTGAATTTTTGAATTTTTGAATTTTTCGAAAATTTCAATTTATTCCAAATTTCGCATTATTTGATTTTCCAGGCAACGACATATCGATGGAAAGAAGCACAAGCGCAATGTGAAGAAGGCCAAGGAGCAGCAGCCGAATTTGGGATAATTCGATTTTTTTTTAAATTATTTTTTTTTGTTTGGTTGAAAATTGTTCTGTTTCTTATTTTATCTATTTATTTTGTCAATAAAAATTAGTTCTTTTTGGTTTTTTTACAAAACTTTTCTTTTAAAAATTGACCCTAACAAAGGAAATTCGGGAAAATTTGAGGGCTCAACTTCGATTTAATTTAACTCGGTTACTGTAAGAGATATCGGAAAGTGGTTAACTAAGAAAATGTTTATTAAGATGTCAGCAATATTTTGTTAGTTGGCCACTTTTTGATATCTTTCACAGGAGCCGAGATAATTGGGCCCCAAGCGCACTACATCAGAGGTCACTGTGAAGCCTGTAGCACCTTGCGCTTCAACTCACTTTATCTCGGTTACTGTAGGAGATATCAAAAATTAGCCAACTGAAAAATATTGCTGACTTCATAATAAACATTTTATTAGTTGACACCTTTTTTATATCTTTCACAGGAGCCATGATAAATTGGCTCAAAGATTTAAGAATTTTTGAAGATTTTAAGAATTTAGCATTTTATCTTTAAGCCC</canonical>
            <polymorphic>GGGACTTTTGGATTTCTAGGCCATCAACTTTTTTTTGAAAATTATTATTTTTTTGGGATTTTTGCATTGAAATTTTTTTTTGGAATATTTAGAAATTAAAAAAAATGATGGCCTAACTAAGGGATTTCTAGGCCACCAATTTTTTTCAAAATTTTAACAAAATAACGTTTCAGATTTCAACTGAAAATGCCAAGAATACGGTAATGAAGGGACGGGACGCGAACGTTTTGTTGAAATGTGAGCTCTGTGATATTTCAATGACCGGGAAGGATAATTGGTGGGAATTTTGGAAATTTAAGGATTTTTGAATTTTTGAATTTTTGAATTTTTCGAAAATTTCAATTTATTCCAAATTTCGCATTATTTGATTTTCCAGGCAACGACATATCGATGGAAAGAAGCACAAGCGCAATGTGAAGAAGGCCAAGGAGCAGCAGCCGAATTTGGGATAATTCGATTTTTTTTTAAATTATTTTTTTTTGTTTGGTTGAAAATTGTTYTGTTTCTTATTTTATCTATTTATTTTGTCAATAAAAATTAGTTCTTTTTGGTTTTTTTACAAAACTTTTCTTTTAAAAATTGACCCTAACAAAGGAAATTCGGGAAAATTTGAGGGCTCAACTTCGATTTAATTTAACTCGGTTACTGTAAGAGATATCGGAAAGTGGTTAACTAAGAAAATGTTTATTAAGATGTCAGCAATATTTTGTTAGTTGGCCACTTTTTGATATCTTTCACAGGAGCCGAGATAATTGGGCCCCAAGCGCACTACATCAGAGGTCACTGTGAAGCCTGTAGCACCTTGCGCTTCAACTCACTTTATCTCGGTTACTGTAGGAGATATCAAAAATTAGCCAACTGAAAAATATTGCTGACTTCATAATAAACATTTTATTAGTTGACACCTTTTTTATATCTTTCACAGGAGCCATGATAAATTGGCTCAAAGATTTAAGAATTTTTGAAGATTTTAAGAATTTAGCATTTTATCTTTAAGCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTCGCATTATTTGATTTTC</pcr_primer_p1>
		<pcr_primer_p2>AATTTCCTTTGTTAGGGTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTTCGCATTATTTGATTTTCCAGGCAACGACATATCGATGGAAAGAAGCACAAGCGCAATGTGAAGAAGGCCAAGGAGCAGCAGCCGAATTTGGGATAATTCGATTTTTTTTTAAATTATTTTTTTTTGTTTGGTTGAAAATTGTTCTGTTTCTTATTTTATCTATTTATTTTGTCAATAAAAATTAGTTCTTTTTGGTTTTTTTACAAAACTTTTCTTTTAAAAATTGACCCTAACAAAGGAAATT</canonical_amplicon>
		<polymorphic_amplicon>AATTTCGCATTATTTGATTTTCCAGGCAACGACATATCGATGGAAAGAAGCACAAGCGCAATGTGAAGAAGGCCAAGGAGCAGCAGCCGAATTTGGGATAATTCGATTTTTTTTTAAATTATTTTTTTTTGTTTGGTTGAAAATTGTTYTGTTTCTTATTTTATCTATTTATTTTGTCAATAAAAATTAGTTCTTTTTGGTTTTTTTACAAAACTTTTCTTTTAAAAATTGACCCTAACAAAGGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32707</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>307907</contig_pos>
        <strand>+</strand>
        <context>TATACCCTCT[A/C]ATAGAAGCGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGAAAAGCTCCACAAATTGATACCAAACACCAAATACCGTATACCCTCT</left_flank>
        <right_flank>ATAGAAGCGATTACGCTCTATTGTTGTCAACGCCGCCTAGAACGCGTCCT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATATCTATTTTAGTTGGTTCAAAAATATTGATCCGGAAGGAAGTTACGATCCTTGGAATAGCGGAAACTGAAGCATTTGGGTTTTGTGTGGCGTCCGGATCTCATGGAATCAGTTGCTTTTAAAGGTGGGGGGACAAAAAAAAAAATAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGGGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAGACTAAACTCTGTGATTTTCCAAAAATTCAAAATGCAGAATATAGGACCTGAAAAGCTCCACAAATTGATACCAAACACCAAATACCGTATACCCTCTCATAGAAGCGATTACGCTCTATTGTTGTCAACGCCGCCTAGAACGCGTCCTAGAGCCTATCAGCTTTGAGCGTAATTATCTCGATTCCTGTAAAAGATATTAAAAATTTGTCATTTAATAAAATATTTCTGATAATACGATAAACATTTCCTCAGTTGACAGATTTTTGATAGCTTCCCTAGCTTTTGAGTTAAACGCGTTTTAATGCAAGCCGATCTAGTGCGGCGGTGGGTAGGCTGCATTAGAGCGCGTATATCACAAGAATGAGTAATGCTATTAGAATTCTGTCAACAGATAAAATATGTATCATAATATCGCCAATATTTTATCAGTTAACACATTTTTGATATCTCTCACAGGAAATGAGATATAAGGGCTTGAAGTTGAGGTTGGGTGGACCTCTATTAGGACGACATTTGGAATCTCCAAATCTGTGGGTTCTTTTAAAATCGAGGTACCCAGAAAATCCCCCAAATTCTTCTCTTTTTTTGGCTCTTTTTT</canonical>
            <polymorphic>GCATATCTATTTTAGTTGGTTCAAAAATATTGATCCGGAAGGAAGTTACGATCCTTGGAATAGCGGAAACTGAAGCATTTGGGTTTTGTGTGGCGTCCGGATCTCATGGAATCAGTTGCTTTTAAAGGTGGGGGGACAAAAAAAAAAATAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGGGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAGACTAAACTCTGTGATTTTCCAAAAATTCAAAATGCAGAATATAGGACCTGAAAAGCTCCACAAATTGATACCAAACACCAAATACCGTATACCCTCTMATAGAAGCGATTACGCTCTATTGTTGTCAACGCCGCCTAGAACGCGTCCTAGAGCCTATCAGCTTTGAGCGTAATTATCTCGATTCCTGTAAAAGATATTAAAAATTTGTCATTTAATAAAATATTTCTGATAATACGATAAACATTTCCTCAGTTGACAGATTTTTGATAGCTTCCCTAGCTTTTGAGTTAAACGCGTTTTAATGCAAGCCGATCTAGTGCGGCGGTGGGTAGGCTGCATTAGAGCGCGTATATCACAAGAATGAGTAATGCTATTAGAATTCTGTCAACAGATAAAATATGTATCATAATATCGCCAATATTTTATCAGTTAACACATTTTTGATATCTCTCACAGGAAATGAGATATAAGGGCTTGAAGTTGAGGTTGGGTGGACCTCTATTAGGACGACATTTGGAATCTCCAAATCTGTGGGTTCTTTTAAAATCGAGGTACCCAGAAAATCCCCCAAATTCTTCTCTTTTTTTGGCTCTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCCACCTTTAAAGACTAAACT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTAAAAGAACCCACAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>561</pcr_amplicon_size>
		<canonical_amplicon>CCCCACCTTTAAAGACTAAACTCTGTGATTTTCCAAAAATTCAAAATGCAGAATATAGGACCTGAAAAGCTCCACAAATTGATACCAAACACCAAATACCGTATACCCTCTCATAGAAGCGATTACGCTCTATTGTTGTCAACGCCGCCTAGAACGCGTCCTAGAGCCTATCAGCTTTGAGCGTAATTATCTCGATTCCTGTAAAAGATATTAAAAATTTGTCATTTAATAAAATATTTCTGATAATACGATAAACATTTCCTCAGTTGACAGATTTTTGATAGCTTCCCTAGCTTTTGAGTTAAACGCGTTTTAATGCAAGCCGATCTAGTGCGGCGGTGGGTAGGCTGCATTAGAGCGCGTATATCACAAGAATGAGTAATGCTATTAGAATTCTGTCAACAGATAAAATATGTATCATAATATCGCCAATATTTTATCAGTTAACACATTTTTGATATCTCTCACAGGAAATGAGATATAAGGGCTTGAAGTTGAGGTTGGGTGGACCTCTATTAGGACGACATTTGGAATCTCCAAATCTGTGGGTTCTTTTAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CCCCACCTTTAAAGACTAAACTCTGTGATTTTCCAAAAATTCAAAATGCAGAATATAGGACCTGAAAAGCTCCACAAATTGATACCAAACACCAAATACCGTATACCCTCTMATAGAAGCGATTACGCTCTATTGTTGTCAACGCCGCCTAGAACGCGTCCTAGAGCCTATCAGCTTTGAGCGTAATTATCTCGATTCCTGTAAAAGATATTAAAAATTTGTCATTTAATAAAATATTTCTGATAATACGATAAACATTTCCTCAGTTGACAGATTTTTGATAGCTTCCCTAGCTTTTGAGTTAAACGCGTTTTAATGCAAGCCGATCTAGTGCGGCGGTGGGTAGGCTGCATTAGAGCGCGTATATCACAAGAATGAGTAATGCTATTAGAATTCTGTCAACAGATAAAATATGTATCATAATATCGCCAATATTTTATCAGTTAACACATTTTTGATATCTCTCACAGGAAATGAGATATAAGGGCTTGAAGTTGAGGTTGGGTGGACCTCTATTAGGACGACATTTGGAATCTCCAAATCTGTGGGTTCTTTTAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32708</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>322614</contig_pos>
        <strand>+</strand>
        <context>ATTRAAAAGG[G/T]TTTTTTGGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGATTTTTTAGGTTACTGTAGTTTTCGTGGCGAGAAATTCATTAAAAAGG</left_flank>
        <right_flank>TTTTTTGGAGTTTTTTTCTTGAATTTTCGTTTTTAGGCAGTTTTTGAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCTAGCTACCGTATTCCCCTCCTATCATTTTACTGTTGAAAATGCGCCCCACCGACACTTCCAACTTCGCTCCAGCCGAAATTTCAAAACGAAAAATTCGTCGAGTCAAAGCGAATGGTCGTGAGAGAGCCCGAATGCATGGGCTCAACGATGCTCTGGACAATTTGAGAGAATACATTCCGATCACCACGAAACACCAAAAATTGAGCAAAATCGAGACATTGCGGCTGGCGAGGTCAGTGAAAAATAGGTTTAAAAATAGGCCAAATATCGTAAATCAATAATTTTTAAGCTTGTAGAGTCGTTAGAAAAAAATTTGAAGTTTCGAAAAAAATTTTTTATTTTGCAAAAATAATGGTATTTTCTCTGTAAACTAGATAAATTCTTGGTTTTTGATTGTTTGCGACCATTTTTAAGCTGTTCCGCTAGAAAATTCGCTGAAAATCGTGATTTTTTAGGTTACTGTAGTTTTCGTGGCGAGAAATTCATTAAAAAGGTTTTTTTGGAGTTTTTTTCTTGAATTTTCGTTTTTAGGCAGTTTTTGAAATCCAAAATTGTGTGAAAAATTGAGAAATTAAAGAAAAATCTGAAAAATTCCAAAAAAAATTTTTTGCGAAAAATTTTTTTTCGAAAATTTTCCAAAACTAGATCAATTATCGTCTTTTTAGTGTTTTGCGACCATTTTTAGAGTTGTTTTGCTGAAAATAGTAATTTTTAGGTTACTGTAGTTTTCGTGGCGAGAAATTTTGTTATTTTTCGAAAACATCGTTTTTTTTGCAGTTTTTTCTGGAACTTTTGTGTTTAAGCTAGTTTTGGAGGCCTAAAAATTTTAAATTAACTAGAAAATTTGAGAAATTTAAGAAAAAAAAATCGGAAAAAATCCAAAAAAAAGTTTTTTGAAATTTCTGAAAAAAAAAGCAAGATTTTTATTTAAATTCAATATATTCCCTGTTTTGACACTAATTTTAGTGCAATTAGCACTAATTACGACATCTAGG</canonical>
            <polymorphic>TCTCTAGCTACCGTATTCCCCTCCTATCATTTTACTGTTGAAAATGCGCCCCACCGACACTTCCAACTTCGCTCCAGCCGAAATTTCAAAACGAAAAATTCGTCGAGTCAAAGCGAATGGTCGTGAGAGAGCCCGAATGCATGGGCTCAACGATGCTCTGGACAATTTGAGAGAATACATTCCGATCACCACGAAACACCAAAAATTGAGCAAAATCGAGACATTGCGGCTGGCGAGGTCAGTGAAAAATAGGTTTAAAAATAGGCCAAATATCGTAAATCAATAATTTTTAAGCTTGTAGAGTCGTTAGAAAAAAATTTGAAGTTTCGAAAAAAATTTTTTATTTTGCAAAAATAATGGTATTTTCTCTGTAAACTAGATAAATTCTTGGTTTTTGATTGTTTGCGACCATTTTTAAGCTGTTCCGCTAGAAAATTCGCTGAAAATCGTGATTTTTTAGGTTACTGTAGTTTTCGTGGCGAGAAATTCATTAAAAAGGKTTTTTTGGAGTTTTTTTCTTGAATTTTCGTTTTTAGGCAGTTTTTGAAATCCAAAATTGTGTGAAAAATTGAGAAATTAAAGAAAAATCTGAAAAATTCCAAAAAAAATTTTTTGCGAAAAATTTTTTTTCGAAAATTTTCCAAAACTAGATCAATTATCGTCTTTTTAGTGTTTTGCGACCATTTTTAGAGTTGTTTTGCTGAAAATAGTAATTTTTAGGTTACTGTAGTTTTCGTGGCGAGAAATTTTGTTATTTTTCGAAAACATCGTTTTTTTTGCAGTTTTTTCTGGAACTTTTGTGTTTAAGCTAGTTTTGGAGGCCTAAAAATTTTAAATTAACTAGAAAATTTGAGAAATTTAAGAAAAAAAAATCGGAAAAAATCCAAAAAAAAGTTTTTTGAAATTTCTGAAAAAAAAAGCAAGATTTTTATTTAAATTCAATATATTCCCTGTTTTGACACTAATTTTAGTGCAATTAGCACTAATTACGACATCTAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTAGAAAATTCGCTGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GCAAAACACTAAAAAGACGATAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCTAGAAAATTCGCTGAAAATCGTGATTTTTTAGGTTACTGTAGTTTTCGTGGCGAGAAATTCATTAAAAAGGTTTTTTTGGAGTTTTTTTCTTGAATTTTCGTTTTTAGGCAGTTTTTGAAATCCAAAATTGTGTGAAAAATTGAGAAATTAAAGAAAAATCTGAAAAATTCCAAAAAAAATTTTTTGCGAAAAATTTTTTTTCGAAAATTTTCCAAAACTAGATCAATTATCGTCTTTTTAGTGTTTTGC</canonical_amplicon>
		<polymorphic_amplicon>GCTAGAAAATTCGCTGAAAATCGTGATTTTTTAGGTTACTGTAGTTTTCGTGGCGAGAAATTCATTAAAAAGGKTTTTTTGGAGTTTTTTTCTTGAATTTTCGTTTTTAGGCAGTTTTTGAAATCCAAAATTGTGTGAAAAATTGAGAAATTAAAGAAAAATCTGAAAAATTCCAAAAAAAATTTTTTGCGAAAAATTTTTTTTCGAAAATTTTCCAAAACTAGATCAATTATCGTCTTTTTAGTGTTTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32709</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>338650</contig_pos>
        <strand></strand>
        <context>aaatggctga[A/C]aatgactgaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATGCTTCAAAATGACTGAAAAAATCTGAAAATTGGCTTAAAATGGCTGA</left_flank>
        <right_flank>AATGACTGAAAAAAGTGATTTCTTCTTCCAGAAGCCCAACGGCGAGATCA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTGAAAATGGCTTAAAATGACTGAAATATTCTGAAAATGCTTCCAAATGAACTAAAAATGCTCAAAAATCGGCTGAAAAGGGGTGAAAATAACCCCAAAATCACTGAAAATGGCCTAAAAATGCTTCAAAATGACTCAAAAAAATCAGAAAATGGCTTAAAATTGACTGAAATTCAGCATGAAATGAATTGAAAATTGGCTGAAAATGGCTCTGAAAAAGCTCGAAATTGGCTGAAAACAACCACTGAAAATAGCCTAAAAATGCTTCAAAAAATCTGAAAATGGCTTGAAATTGACTGAAATTCGGCATGAAATGATTTGAAAATTGGCTGAAATCACTGAAAATGCTCCAAAATCTTCTGAAAAGTGCTGAATACCCCCAAAAACCACTGAAAATGGCCTAAAAATGCTTCAAAATGCTTCAAAAACCACTGAAAATGGCCTAAAAATGCTTCAAAATGACTGAAAAAATCTGAAAATTGGCTTAAAATGGCTGAAAATGACTGAAAAAAGTGATTTCTTCTTCCAGAAGCCCAACGGCGAGATCATTACGACGCCGATTCAGAATCCAAATGGAGAGAGCTACTACATGCGGATGTAGAATATTGATGAATTTGGATTATAATTTATTCATTTCTTCTCGAATTTTTCATTTTCTTTTTTTTCAAAATTTCAAAAAAAATTGATTTTTTGGGATTTTTAAATGGATTTTTTCTCGAATTTCTCATTTTCAAAAATTTCAAAAAAAATTGATTTTTTTAGAATTTTTTTTCTGAAATTTTCTTATTTTTGGCTATATTTTTGCCCCTTTTTTTTACTTTTGTTGTTGAATTTCTCTATTTTCTAGTTCAAAATTGCTCCTTTTTTTCATTGATTTTGTGATGATTTTTTTCCCCCCGCCCCATTCCTTTAGAAATTCCATAAAAATCCCCCGTTTTTCTTCAGATTTTTGAATTTCAAAAAAAATCGATTTTTAAGTGCTTTTTCTTCCCCCAGAA</canonical>
            <polymorphic>GGCTGAAAATGGCTTAAAATGACTGAAATATTCTGAAAATGCTTCCAAATGAACTAAAAATGCTCAAAAATCGGCTGAAAAGGGGTGAAAATAACCCCAAAATCACTGAAAATGGCCTAAAAATGCTTCAAAATGACTCAAAAAAATCAGAAAATGGCTTAAAATTGACTGAAATTCAGCATGAAATGAATTGAAAATTGGCTGAAAATGGCTCTGAAAAAGCTCGAAATTGGCTGAAAACAACCACTGAAAATAGCCTAAAAATGCTTCAAAAAATCTGAAAATGGCTTGAAATTGACTGAAATTCGGCATGAAATGATTTGAAAATTGGCTGAAATCACTGAAAATGCTCCAAAATCTTCTGAAAAGTGCTGAATACCCCCAAAAACCACTGAAAATGGCCTAAAAATGCTTCAAAATGCTTCAAAAACCACTGAAAATGGCCTAAAAATGCTTCAAAATGACTGAAAAAATCTGAAAATTGGCTTAAAATGGCTGAMAATGACTGAAAAAAGTGATTTCTTCTTCCAGAAGCCCAACGGCGAGATCATTACGACGCCGATTCAGAATCCAAATGGAGAGAGCTACTACATGCGGATGTAGAATATTGATGAATTTGGATTATAATTTATTCATTTCTTCTCGAATTTTTCATTTTCTTTTTTTTCAAAATTTCAAAAAAAATTGATTTTTTGGGATTTTTAAATGGATTTTTTCTCGAATTTCTCATTTTCAAAAATTTCAAAAAAAATTGATTTTTTTAGAATTTTTTTTCTGAAATTTTCTTATTTTTGGCTATATTTTTGCCCCTTTTTTTTACTTTTGTTGTTGAATTTCTCTATTTTCTAGTTCAAAATTGCTCCTTTTTTTCATTGATTTTGTGATGATTTTTTTCCCCCCGCCCCATTCCTTTAGAAATTCCATAAAAATCCCCCGTTTTTCTTCAGATTTTTGAATTTCAAAAAAAATCGATTTTTAAGTGCTTTTTCTTCCCCCAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGCACAGTTGAAGGTGAG</pcr_primer_p1>
		<pcr_primer_p2>TCTCTCCATTTGGATTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>966</pcr_amplicon_size>
		<canonical_amplicon>AAAATGACTGAAAAAAGTGATTTCTTCTTCCAGAAGCCCAACGGCGAGATCATTACGACGCCGATTCAGAATCCAAATGGAGAGA</canonical_amplicon>
		<polymorphic_amplicon>AMAATGACTGAAAAAAGTGATTTCTTCTTCCAGAAGCCCAACGGCGAGATCATTACGACGCCGATTCAGAATCCAAATGGAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32710</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>338904</contig_pos>
        <strand></strand>
        <context>AAAAAAAATT[G/A]WTTTTTTTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAATGGATTTTTTCTCGAATTTCTCATTTTCAAAAATTTCAAAAAAAATT</left_flank>
        <right_flank>ATTTTTTTAGAATTTTTTTTCTGAAATTTTCTTATTTTTGGCTATATTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCTAAAAATGCTTCAAAAAATCTGAAAATGGCTTGAAATTGACTGAAATTCGGCATGAAATGATTTGAAAATTGGCTGAAATCACTGAAAATGCTCCAAAATCTTCTGAAAAGTGCTGAATACCCCCAAAAACCACTGAAAATGGCCTAAAAATGCTTCAAAATGCTTCAAAAACCACTGAAAATGGCCTAAAAATGCTTCAAAATGACTGAAAAAATCTGAAAATTGGCTTAAAATGGCTGAAAATGACTGAAAAAAGTGATTTCTTCTTCCAGAAGCCCAACGGCGAGATCATTACGACGCCGATTCAGAATCCAAATGGAGAGAGCTACTACATGCGGATGTAGAATATTGATGAATTTGGATTATAATTTATTCATTTCTTCTCGAATTTTTCATTTTCTTTTTTTTCAAAATTTCAAAAAAAATTGATTTTTTGGGATTTTTAAATGGATTTTTTCTCGAATTTCTCATTTTCAAAAATTTCAAAAAAAATTGATTTTTTTAGAATTTTTTTTCTGAAATTTTCTTATTTTTGGCTATATTTTTGCCCCTTTTTTTTACTTTTGTTGTTGAATTTCTCTATTTTCTAGTTCAAAATTGCTCCTTTTTTTCATTGATTTTGTGATGATTTTTTTCCCCCCGCCCCATTCCTTTAGAAATTCCATAAAAATCCCCCGTTTTTCTTCAGATTTTTGAATTTCAAAAAAAATCGATTTTTAAGTGCTTTTTCTTCCCCCAGAATGTCAGCCCAATCTATGCCATTTTTCTCTTTTTTTCTCTCATGTGAATTTTCTGCTCAATTTTAATTTTTTGCCCTGAAATATGAATTGATTATTTTTAGATTTTTTAGATTTTTCCATTTTTTCCCCTTTTTTAATTTTTTTCAGCAGATTTTCCTAAACTTTCAAAATTCCTAATATTCAGAAATTGAGAAAAAAAATACGAAAAAATATCAAATTTCAAGATTCCAAAATACTCAAAAATTTGAAAAAATT</canonical>
            <polymorphic>AGCCTAAAAATGCTTCAAAAAATCTGAAAATGGCTTGAAATTGACTGAAATTCGGCATGAAATGATTTGAAAATTGGCTGAAATCACTGAAAATGCTCCAAAATCTTCTGAAAAGTGCTGAATACCCCCAAAAACCACTGAAAATGGCCTAAAAATGCTTCAAAATGCTTCAAAAACCACTGAAAATGGCCTAAAAATGCTTCAAAATGACTGAAAAAATCTGAAAATTGGCTTAAAATGGCTGAAAATGACTGAAAAAAGTGATTTCTTCTTCCAGAAGCCCAACGGCGAGATCATTACGACGCCGATTCAGAATCCAAATGGAGAGAGCTACTACATGCGGATGTAGAATATTGATGAATTTGGATTATAATTTATTCATTTCTTCTCGAATTTTTCATTTTCTTTTTTTTCAAAATTTCAAAAAAAATTGATTTTTTGGGATTTTTAAATGGATTTTTTCTCGAATTTCTCATTTTCAAAAATTTCAAAAAAAATTRATTTTTTTAGAATTTTTTTTCTGAAATTTTCTTATTTTTGGCTATATTTTTGCCCCTTTTTTTTACTTTTGTTGTTGAATTTCTCTATTTTCTAGTTCAAAATTGCTCCTTTTTTTCATTGATTTTGTGATGATTTTTTTCCCCCCGCCCCATTCCTTTAGAAATTCCATAAAAATCCCCCGTTTTTCTTCAGATTTTTGAATTTCAAAAAAAATCGATTTTTAAGTGCTTTTTCTTCCCCCAGAATGTCAGCCCAATCTATGCCATTTTTCTCTTTTTTTCTCTCATGTGAATTTTCTGCTCAATTTTAATTTTTTGCCCTGAAATATGAATTGATTATTTTTAGATTTTTTAGATTTTTCCATTTTTTCCCCTTTTTTAATTTTTTTCAGCAGATTTTCCTAAACTTTCAAAATTCCTAATATTCAGAAATTGAGAAAAAAAATACGAAAAAATATCAAATTTCAAGATTCCAAAATACTCAAAAATTTGAAAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCAAATGGAGAGAGCTACTAC</pcr_primer_p1>
		<pcr_primer_p2>GGCAAAAATATAGCCAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>ATCCAAATGGAGAGAGCTACTACATGCGGATGTAGAATATTGATGAATTTGGATTATAATTTATTCATTTCTTCTCGAATTTTTCATTTTCTTTTTTTTCAAAATTTCAAAAAAAATTGATTTTTTGGGATTTTTAAATGGATTTTTTCTCGAATTTCTCATTTTCAAAAATTTCAAAAAAAATTGATTTTTTTAGAATTTTTTTTCTGAAATTTTCTTATTTTTGGCTATATTTTTGCC</canonical_amplicon>
		<polymorphic_amplicon>ATCCAAATGGAGAGAGCTACTACATGCGGATGTAGAATATTGATGAATTTGGATTATAATTTATTCATTTCTTCTCGAATTTTTCATTTTCTTTTTTTTCAAAATTTCAAAAAAAATTGATTTTTTGGGATTTTTAAATGGATTTTTTCTCGAATTTCTCATTTTCAAAAATTTCAAAAAAAATTRATTTTTTTAGAATTTTTTTTCTGAAATTTTCTTATTTTTGGCTATATTTTTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32711</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>338905</contig_pos>
        <strand></strand>
        <context>AAAAAAATTR[A/T]TTTTTTTAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATGGATTTTTTCTCGAATTTCTCATTTTCAAAAATTTCAAAAAAAATTG</left_flank>
        <right_flank>TTTTTTTAGAATTTTTTTTCTGAAATTTTCTTATTTTTGGCTATATTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCTAAAAATGCTTCAAAAAATCTGAAAATGGCTTGAAATTGACTGAAATTCGGCATGAAATGATTTGAAAATTGGCTGAAATCACTGAAAATGCTCCAAAATCTTCTGAAAAGTGCTGAATACCCCCAAAAACCACTGAAAATGGCCTAAAAATGCTTCAAAATGCTTCAAAAACCACTGAAAATGGCCTAAAAATGCTTCAAAATGACTGAAAAAATCTGAAAATTGGCTTAAAATGGCTGAAAATGACTGAAAAAAGTGATTTCTTCTTCCAGAAGCCCAACGGCGAGATCATTACGACGCCGATTCAGAATCCAAATGGAGAGAGCTACTACATGCGGATGTAGAATATTGATGAATTTGGATTATAATTTATTCATTTCTTCTCGAATTTTTCATTTTCTTTTTTTTCAAAATTTCAAAAAAAATTGATTTTTTGGGATTTTTAAATGGATTTTTTCTCGAATTTCTCATTTTCAAAAATTTCAAAAAAAATTGATTTTTTTAGAATTTTTTTTCTGAAATTTTCTTATTTTTGGCTATATTTTTGCCCCTTTTTTTTACTTTTGTTGTTGAATTTCTCTATTTTCTAGTTCAAAATTGCTCCTTTTTTTCATTGATTTTGTGATGATTTTTTTCCCCCCGCCCCATTCCTTTAGAAATTCCATAAAAATCCCCCGTTTTTCTTCAGATTTTTGAATTTCAAAAAAAATCGATTTTTAAGTGCTTTTTCTTCCCCCAGAATGTCAGCCCAATCTATGCCATTTTTCTCTTTTTTTCTCTCATGTGAATTTTCTGCTCAATTTTAATTTTTTGCCCTGAAATATGAATTGATTATTTTTAGATTTTTTAGATTTTTCCATTTTTTCCCCTTTTTTAATTTTTTTCAGCAGATTTTCCTAAACTTTCAAAATTCCTAATATTCAGAAATTGAGAAAAAAAATACGAAAAAATATCAAATTTCAAGATTCCAAAATACTCAAAAATTTGAAAAAATTG</canonical>
            <polymorphic>GCCTAAAAATGCTTCAAAAAATCTGAAAATGGCTTGAAATTGACTGAAATTCGGCATGAAATGATTTGAAAATTGGCTGAAATCACTGAAAATGCTCCAAAATCTTCTGAAAAGTGCTGAATACCCCCAAAAACCACTGAAAATGGCCTAAAAATGCTTCAAAATGCTTCAAAAACCACTGAAAATGGCCTAAAAATGCTTCAAAATGACTGAAAAAATCTGAAAATTGGCTTAAAATGGCTGAAAATGACTGAAAAAAGTGATTTCTTCTTCCAGAAGCCCAACGGCGAGATCATTACGACGCCGATTCAGAATCCAAATGGAGAGAGCTACTACATGCGGATGTAGAATATTGATGAATTTGGATTATAATTTATTCATTTCTTCTCGAATTTTTCATTTTCTTTTTTTTCAAAATTTCAAAAAAAATTGATTTTTTGGGATTTTTAAATGGATTTTTTCTCGAATTTCTCATTTTCAAAAATTTCAAAAAAAATTGWTTTTTTTAGAATTTTTTTTCTGAAATTTTCTTATTTTTGGCTATATTTTTGCCCCTTTTTTTTACTTTTGTTGTTGAATTTCTCTATTTTCTAGTTCAAAATTGCTCCTTTTTTTCATTGATTTTGTGATGATTTTTTTCCCCCCGCCCCATTCCTTTAGAAATTCCATAAAAATCCCCCGTTTTTCTTCAGATTTTTGAATTTCAAAAAAAATCGATTTTTAAGTGCTTTTTCTTCCCCCAGAATGTCAGCCCAATCTATGCCATTTTTCTCTTTTTTTCTCTCATGTGAATTTTCTGCTCAATTTTAATTTTTTGCCCTGAAATATGAATTGATTATTTTTAGATTTTTTAGATTTTTCCATTTTTTCCCCTTTTTTAATTTTTTTCAGCAGATTTTCCTAAACTTTCAAAATTCCTAATATTCAGAAATTGAGAAAAAAAATACGAAAAAATATCAAATTTCAAGATTCCAAAATACTCAAAAATTTGAAAAAATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCAAATGGAGAGAGCTACTAC</pcr_primer_p1>
		<pcr_primer_p2>GGCAAAAATATAGCCAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>ATCCAAATGGAGAGAGCTACTACATGCGGATGTAGAATATTGATGAATTTGGATTATAATTTATTCATTTCTTCTCGAATTTTTCATTTTCTTTTTTTTCAAAATTTCAAAAAAAATTGATTTTTTGGGATTTTTAAATGGATTTTTTCTCGAATTTCTCATTTTCAAAAATTTCAAAAAAAATTGATTTTTTTAGAATTTTTTTTCTGAAATTTTCTTATTTTTGGCTATATTTTTGCC</canonical_amplicon>
		<polymorphic_amplicon>ATCCAAATGGAGAGAGCTACTACATGCGGATGTAGAATATTGATGAATTTGGATTATAATTTATTCATTTCTTCTCGAATTTTTCATTTTCTTTTTTTTCAAAATTTCAAAAAAAATTGATTTTTTGGGATTTTTAAATGGATTTTTTCTCGAATTTCTCATTTTCAAAAATTTCAAAAAAAATTGWTTTTTTTAGAATTTTTTTTCTGAAATTTTCTTATTTTTGGCTATATTTTTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32712</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>338924</contig_pos>
        <strand>+</strand>
        <context>GAATTTTTTT[A/T]CTGAAATTYT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCTCATTTTCAAAAATTTCAAAAAAAATTGATTTTTTTAGAATTTTTTT</left_flank>
        <right_flank>CTGAAATTTTCTTATTTTTGGCTATATTTTTGCCCCTTTTTTTTACTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCTGAAAATGGCTTGAAATTGACTGAAATTCGGCATGAAATGATTTGAAAATTGGCTGAAATCACTGAAAATGCTCCAAAATCTTCTGAAAAGTGCTGAATACCCCCAAAAACCACTGAAAATGGCCTAAAAATGCTTCAAAATGCTTCAAAAACCACTGAAAATGGCCTAAAAATGCTTCAAAATGACTGAAAAAATCTGAAAATTGGCTTAAAATGGCTGAAAATGACTGAAAAAAGTGATTTCTTCTTCCAGAAGCCCAACGGCGAGATCATTACGACGCCGATTCAGAATCCAAATGGAGAGAGCTACTACATGCGGATGTAGAATATTGATGAATTTGGATTATAATTTATTCATTTCTTCTCGAATTTTTCATTTTCTTTTTTTTCAAAATTTCAAAAAAAATTGATTTTTTGGGATTTTTAAATGGATTTTTTCTCGAATTTCTCATTTTCAAAAATTTCAAAAAAAATTGATTTTTTTAGAATTTTTTTTCTGAAATTTTCTTATTTTTGGCTATATTTTTGCCCCTTTTTTTTACTTTTGTTGTTGAATTTCTCTATTTTCTAGTTCAAAATTGCTCCTTTTTTTCATTGATTTTGTGATGATTTTTTTCCCCCCGCCCCATTCCTTTAGAAATTCCATAAAAATCCCCCGTTTTTCTTCAGATTTTTGAATTTCAAAAAAAATCGATTTTTAAGTGCTTTTTCTTCCCCCAGAATGTCAGCCCAATCTATGCCATTTTTCTCTTTTTTTCTCTCATGTGAATTTTCTGCTCAATTTTAATTTTTTGCCCTGAAATATGAATTGATTATTTTTAGATTTTTTAGATTTTTCCATTTTTTCCCCTTTTTTAATTTTTTTCAGCAGATTTTCCTAAACTTTCAAAATTCCTAATATTCAGAAATTGAGAAAAAAAATACGAAAAAATATCAAATTTCAAGATTCCAAAATACTCAAAAATTTGAAAAAATTGTTTTTTGGTTTTTTGGAAT</canonical>
            <polymorphic>AATCTGAAAATGGCTTGAAATTGACTGAAATTCGGCATGAAATGATTTGAAAATTGGCTGAAATCACTGAAAATGCTCCAAAATCTTCTGAAAAGTGCTGAATACCCCCAAAAACCACTGAAAATGGCCTAAAAATGCTTCAAAATGCTTCAAAAACCACTGAAAATGGCCTAAAAATGCTTCAAAATGACTGAAAAAATCTGAAAATTGGCTTAAAATGGCTGAAAATGACTGAAAAAAGTGATTTCTTCTTCCAGAAGCCCAACGGCGAGATCATTACGACGCCGATTCAGAATCCAAATGGAGAGAGCTACTACATGCGGATGTAGAATATTGATGAATTTGGATTATAATTTATTCATTTCTTCTCGAATTTTTCATTTTCTTTTTTTTCAAAATTTCAAAAAAAATTGATTTTTTGGGATTTTTAAATGGATTTTTTCTCGAATTTCTCATTTTCAAAAATTTCAAAAAAAATTGATTTTTTTAGAATTTTTTTWCTGAAATTTTCTTATTTTTGGCTATATTTTTGCCCCTTTTTTTTACTTTTGTTGTTGAATTTCTCTATTTTCTAGTTCAAAATTGCTCCTTTTTTTCATTGATTTTGTGATGATTTTTTTCCCCCCGCCCCATTCCTTTAGAAATTCCATAAAAATCCCCCGTTTTTCTTCAGATTTTTGAATTTCAAAAAAAATCGATTTTTAAGTGCTTTTTCTTCCCCCAGAATGTCAGCCCAATCTATGCCATTTTTCTCTTTTTTTCTCTCATGTGAATTTTCTGCTCAATTTTAATTTTTTGCCCTGAAATATGAATTGATTATTTTTAGATTTTTTAGATTTTTCCATTTTTTCCCCTTTTTTAATTTTTTTCAGCAGATTTTCCTAAACTTTCAAAATTCCTAATATTCAGAAATTGAGAAAAAAAATACGAAAAAATATCAAATTTCAAGATTCCAAAATACTCAAAAATTTGAAAAAATTGTTTTTTGGTTTTTTGGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>236 210 170 113 92 90 84 5</canonical_bands>
                <polymorphic_bands>380 236 113 92 90 84 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCGAATTTCTCATTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCAAAAATCTGAAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TCTCGAATTTCTCATTTTCAAAAATTTCAAAAAAAATTGATTTTTTTAGAATTTTTTTTCTGAAATTTTCTTATTTTTGGCTATATTTTTGCCCCTTTTTTTTACTTTTGTTGTTGAATTTCTCTATTTTCTAGTTCAAAATTGCTCCTTTTTTTCATTGATTTTGTGATGATTTTTTTCCCCCCGCCCCATTCCTTTAGAAATTCCATAAAAATCCCCCGTTTTTCTTCAGATTTTTGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>TCTCGAATTTCTCATTTTCAAAAATTTCAAAAAAAATTGATTTTTTTAGAATTTTTTTWCTGAAATTTTCTTATTTTTGGCTATATTTTTGCCCCTTTTTTTTACTTTTGTTGTTGAATTTCTCTATTTTCTAGTTCAAAATTGCTCCTTTTTTTCATTGATTTTGTGATGATTTTTTTCCCCCCGCCCCATTCCTTTAGAAATTCCATAAAAATCCCCCGTTTTTCTTCAGATTTTTGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32713</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>338933</contig_pos>
        <strand></strand>
        <context>TWCTGAAATT[T/C]TCTTATTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCAAAAATTTCAAAAAAAATTGATTTTTTTAGAATTTTTTTTCTGAAATT</left_flank>
        <right_flank>TCTTATTTTTGGCTATATTTTTGCCCCTTTTTTTTACTTTTGTTGTTGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGCTTGAAATTGACTGAAATTCGGCATGAAATGATTTGAAAATTGGCTGAAATCACTGAAAATGCTCCAAAATCTTCTGAAAAGTGCTGAATACCCCCAAAAACCACTGAAAATGGCCTAAAAATGCTTCAAAATGCTTCAAAAACCACTGAAAATGGCCTAAAAATGCTTCAAAATGACTGAAAAAATCTGAAAATTGGCTTAAAATGGCTGAAAATGACTGAAAAAAGTGATTTCTTCTTCCAGAAGCCCAACGGCGAGATCATTACGACGCCGATTCAGAATCCAAATGGAGAGAGCTACTACATGCGGATGTAGAATATTGATGAATTTGGATTATAATTTATTCATTTCTTCTCGAATTTTTCATTTTCTTTTTTTTCAAAATTTCAAAAAAAATTGATTTTTTGGGATTTTTAAATGGATTTTTTCTCGAATTTCTCATTTTCAAAAATTTCAAAAAAAATTGATTTTTTTAGAATTTTTTTTCTGAAATTTTCTTATTTTTGGCTATATTTTTGCCCCTTTTTTTTACTTTTGTTGTTGAATTTCTCTATTTTCTAGTTCAAAATTGCTCCTTTTTTTCATTGATTTTGTGATGATTTTTTTCCCCCCGCCCCATTCCTTTAGAAATTCCATAAAAATCCCCCGTTTTTCTTCAGATTTTTGAATTTCAAAAAAAATCGATTTTTAAGTGCTTTTTCTTCCCCCAGAATGTCAGCCCAATCTATGCCATTTTTCTCTTTTTTTCTCTCATGTGAATTTTCTGCTCAATTTTAATTTTTTGCCCTGAAATATGAATTGATTATTTTTAGATTTTTTAGATTTTTCCATTTTTTCCCCTTTTTTAATTTTTTTCAGCAGATTTTCCTAAACTTTCAAAATTCCTAATATTCAGAAATTGAGAAAAAAAATACGAAAAAATATCAAATTTCAAGATTCCAAAATACTCAAAAATTTGAAAAAATTGTTTTTTGGTTTTTTGGAATTTCTGAATT</canonical>
            <polymorphic>ATGGCTTGAAATTGACTGAAATTCGGCATGAAATGATTTGAAAATTGGCTGAAATCACTGAAAATGCTCCAAAATCTTCTGAAAAGTGCTGAATACCCCCAAAAACCACTGAAAATGGCCTAAAAATGCTTCAAAATGCTTCAAAAACCACTGAAAATGGCCTAAAAATGCTTCAAAATGACTGAAAAAATCTGAAAATTGGCTTAAAATGGCTGAAAATGACTGAAAAAAGTGATTTCTTCTTCCAGAAGCCCAACGGCGAGATCATTACGACGCCGATTCAGAATCCAAATGGAGAGAGCTACTACATGCGGATGTAGAATATTGATGAATTTGGATTATAATTTATTCATTTCTTCTCGAATTTTTCATTTTCTTTTTTTTCAAAATTTCAAAAAAAATTGATTTTTTGGGATTTTTAAATGGATTTTTTCTCGAATTTCTCATTTTCAAAAATTTCAAAAAAAATTGATTTTTTTAGAATTTTTTTTCTGAAATTYTCTTATTTTTGGCTATATTTTTGCCCCTTTTTTTTACTTTTGTTGTTGAATTTCTCTATTTTCTAGTTCAAAATTGCTCCTTTTTTTCATTGATTTTGTGATGATTTTTTTCCCCCCGCCCCATTCCTTTAGAAATTCCATAAAAATCCCCCGTTTTTCTTCAGATTTTTGAATTTCAAAAAAAATCGATTTTTAAGTGCTTTTTCTTCCCCCAGAATGTCAGCCCAATCTATGCCATTTTTCTCTTTTTTTCTCTCATGTGAATTTTCTGCTCAATTTTAATTTTTTGCCCTGAAATATGAATTGATTATTTTTAGATTTTTTAGATTTTTCCATTTTTTCCCCTTTTTTAATTTTTTTCAGCAGATTTTCCTAAACTTTCAAAATTCCTAATATTCAGAAATTGAGAAAAAAAATACGAAAAAATATCAAATTTCAAGATTCCAAAATACTCAAAAATTTGAAAAAATTGTTTTTTGGTTTTTTGGAATTTCTGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>311 122 91 85 53 50 47 38 32 31 27 26 25 19 17 14 12</canonical_bands>
                <polymorphic_bands>311 122 91 85 67 50 47 38 32 31 27 26 25 19 17 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCGAATTTCTCATTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCAAAAATCTGAAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TCTCGAATTTCTCATTTTCAAAAATTTCAAAAAAAATTGATTTTTTTAGAATTTTTTTTCTGAAATTTTCTTATTTTTGGCTATATTTTTGCCCCTTTTTTTTACTTTTGTTGTTGAATTTCTCTATTTTCTAGTTCAAAATTGCTCCTTTTTTTCATTGATTTTGTGATGATTTTTTTCCCCCCGCCCCATTCCTTTAGAAATTCCATAAAAATCCCCCGTTTTTCTTCAGATTTTTGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>TCTCGAATTTCTCATTTTCAAAAATTTCAAAAAAAATTGATTTTTTTAGAATTTTTTTTCTGAAATTYTCTTATTTTTGGCTATATTTTTGCCCCTTTTTTTTACTTTTGTTGTTGAATTTCTCTATTTTCTAGTTCAAAATTGCTCCTTTTTTTCATTGATTTTGTGATGATTTTTTTCCCCCCGCCCCATTCCTTTAGAAATTCCATAAAAATCCCCCGTTTTTCTTCAGATTTTTGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32714</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>340569</contig_pos>
        <strand>+</strand>
        <context>attttgagat[C/T]tcttacagca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTGTAAAATTTCAAATCCAACATTTTATCAGTTAACCGAATTTTGAGAT</left_flank>
        <right_flank>TCTTACAGCAACTGAGATAGGACCCCAAATATACCGGACGCCTGCTTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAGTCTTCAACTTTATTAAAACAGAACAATTCAAAAATACAGTAATTCCATCTAGCTTAATTTCAACTTCTTTCCACTCTCCGCCGTTCCCTGATAAGTTTCCACTACTGCGGTCTTGACATAATAAAACATATTGAAGACCTTTCTAATCAACCCAAACTGTTCATCCGCTTCAAACAATCTGTCCATTTGAGCAGATTGCTCAGCAACTGATCTCATGCGATTTCGAGTTTCCTCGAGGGTCTGAAAAACGGGTTTTATTGATTTTTTGGTTCTGAAAGACGTTACCAATTCAGCATAATCTGCGACAGGAGCAGACAAATTGAGAATTTCTTTAAGATTATCAATGATTTCTTGGTAATGAACCATTCGCTGATCTCTGTTCTGTAAAAAAACACTTATCTTGGTTACGGTAAGAGATATCAAAAAAGTGATCAACTAATAAAATGTGTAAAATTTCAAATCCAACATTTTATCAGTTAACCGAATTTTGAGATCTCTTACAGCAACTGAGATAGGACCCCAAATATACCGGACGCCTGCTTTCTCCAACTTGTTAACTTTGATTTCGAAAATTCGAGAAATCTCCCGCTCGAAATGGTCTGCAAACACCGCGACGCAAAGTTGCAACCGGTTTGCGTACCGTAATCTCAAAAAATTCGATTTTTGAAGATTTTCAGCTTGTTCAAAGTTTTCAGAAGCCTGTAAAAATTATAAATATTTTTTTTTCAGAACAATATTTCCGCTGTTTTTTTTTCAGTATTTGACTTGAATTCCTTTATTTTTTTCGAATATGAAACCTTCAAATTTTAAATTCCCGCTAATATCCTTAAACGCGCCAGCCTGGCGCATCTCGCGATGCGTTGACTCATTTCTCGTGCGATGCATATTTTGAAGATTTAAAAGACTTTTTCAGCTTTTAATCCGAATTTTTCGGTTTTCTGACTAAAAAAATTGAAAGAAAGCGTAATTTTTATACAGAAATCCTGGAAAACTAT</canonical>
            <polymorphic>CAAAGTCTTCAACTTTATTAAAACAGAACAATTCAAAAATACAGTAATTCCATCTAGCTTAATTTCAACTTCTTTCCACTCTCCGCCGTTCCCTGATAAGTTTCCACTACTGCGGTCTTGACATAATAAAACATATTGAAGACCTTTCTAATCAACCCAAACTGTTCATCCGCTTCAAACAATCTGTCCATTTGAGCAGATTGCTCAGCAACTGATCTCATGCGATTTCGAGTTTCCTCGAGGGTCTGAAAAACGGGTTTTATTGATTTTTTGGTTCTGAAAGACGTTACCAATTCAGCATAATCTGCGACAGGAGCAGACAAATTGAGAATTTCTTTAAGATTATCAATGATTTCTTGGTAATGAACCATTCGCTGATCTCTGTTCTGTAAAAAAACACTTATCTTGGTTACGGTAAGAGATATCAAAAAAGTGATCAACTAATAAAATGTGTAAAATTTCAAATCCAACATTTTATCAGTTAACCGAATTTTGAGATYTCTTACAGCAACTGAGATAGGACCCCAAATATACCGGACGCCTGCTTTCTCCAACTTGTTAACTTTGATTTCGAAAATTCGAGAAATCTCCCGCTCGAAATGGTCTGCAAACACCGCGACGCAAAGTTGCAACCGGTTTGCGTACCGTAATCTCAAAAAATTCGATTTTTGAAGATTTTCAGCTTGTTCAAAGTTTTCAGAAGCCTGTAAAAATTATAAATATTTTTTTTTCAGAACAATATTTCCGCTGTTTTTTTTTCAGTATTTGACTTGAATTCCTTTATTTTTTTCGAATATGAAACCTTCAAATTTTAAATTCCCGCTAATATCCTTAAACGCGCCAGCCTGGCGCATCTCGCGATGCGTTGACTCATTTCTCGTGCGATGCATATTTTGAAGATTTAAAAGACTTTTTCAGCTTTTAATCCGAATTTTTCGGTTTTCTGACTAAAAAAATTGAAAGAAAGCGTAATTTTTATACAGAAATCCTGGAAAACTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>504 213 163 62 58</canonical_bands>
                <polymorphic_bands>566 213 163 58</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAATGATTTCTTGGTAATGAA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCGAAATCAAAGTTAACAA</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>ATCAATGATTTCTTGGTAATGAACCATTCGCTGATCTCTGTTCTGTAAAAAAACACTTATCTTGGTTACGGTAAGAGATATCAAAAAAGTGATCAACTAATAAAATGTGTAAAATTTCAAATCCAACATTTTATCAGTTAACCGAATTTTGAGATCTCTTACAGCAACTGAGATAGGACCCCAAATATACCGGACGCCTGCTTTCTCCAACTTGTTAACTTTGATTTCGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATCAATGATTTCTTGGTAATGAACCATTCGCTGATCTCTGTTCTGTAAAAAAACACTTATCTTGGTTACGGTAAGAGATATCAAAAAAGTGATCAACTAATAAAATGTGTAAAATTTCAAATCCAACATTTTATCAGTTAACCGAATTTTGAGATYTCTTACAGCAACTGAGATAGGACCCCAAATATACCGGACGCCTGCTTTCTCCAACTTGTTAACTTTGATTTCGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32715</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>341334</contig_pos>
        <strand>+</strand>
        <context>CACAAATTTC[A/G]GCCAATTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTCTATCATTTTCTAGACCTTTTTTCACTCGATTTTTCACAAATTTC</left_flank>
        <right_flank>GCCAATTTTTCTTCCAGAACTTTCCAAAAATGCTCGGCACCCGTCTGAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGACTTGAATTCCTTTATTTTTTTCGAATATGAAACCTTCAAATTTTAAATTCCCGCTAATATCCTTAAACGCGCCAGCCTGGCGCATCTCGCGATGCGTTGACTCATTTCTCGTGCGATGCATATTTTGAAGATTTAAAAGACTTTTTCAGCTTTTAATCCGAATTTTTCGGTTTTCTGACTAAAAAAATTGAAAGAAAGCGTAATTTTTATACAGAAATCCTGGAAAACTATCGATTTTTGCTATTTTTCAGCTAGAAAATGATTTTTTTACATAAAATTTTTTTTCAGAGTTTTAAGCATTTCAGAACGATTCGACTGGGAAATTGGCAGAAATTTAGAGAAAAGAACCTGAAAAATTCATTTTTAAAAGCTTTTTGAACCTGAAAATAATTTTTTTCACCTTTTTTTTCGATTTTTTTTGTAAAATTTTTATTGGTTTTCAGCTATTTTCTATCATTTTCTAGACCTTTTTTCACTCGATTTTTCACAAATTTCAGCCAATTTTTCTTCCAGAACTTTCCAAAAATGCTCGGCACCCGTCTGAGCACCACTGGCAGATGCCTTCTGGCCGCCACGTCGCATGTTGAAGTCTCCGGAGGCATTCAGAAGCGACAAATGGGACGGAGACAGCCGAAACAGGGAAAACCGCCGATTTTGCCGCCGTCTAAGAAGGTGCGGCGATGGGAACTAGGAGAAAAATATTTAAAAAAAATAAAAAATTCCCAAATTTTTTCCTGAAAAATCTGAAAAAAGTCATTTTTGTTGCCTGAAAACTAGAAAAAATAAGGAATTCTGAAATTTTTCGTCGAAAAAACCCCAATATTTCCTTCCAGGTCCTCTATCACGTCGTCCACGCCCCGTGGCAGAAACCAGAAGACGTCGAGGAGCTTCTGTGGCGTCGTCACGCCTACAACAACGCCGTCGTCTCGCTGCGCGAGGTTTTCCGCGCGGAAATCGCTCAAAACGCGTCACACGGACAGGGTATCGAGGCGATGA</canonical>
            <polymorphic>TTGACTTGAATTCCTTTATTTTTTTCGAATATGAAACCTTCAAATTTTAAATTCCCGCTAATATCCTTAAACGCGCCAGCCTGGCGCATCTCGCGATGCGTTGACTCATTTCTCGTGCGATGCATATTTTGAAGATTTAAAAGACTTTTTCAGCTTTTAATCCGAATTTTTCGGTTTTCTGACTAAAAAAATTGAAAGAAAGCGTAATTTTTATACAGAAATCCTGGAAAACTATCGATTTTTGCTATTTTTCAGCTAGAAAATGATTTTTTTACATAAAATTTTTTTTCAGAGTTTTAAGCATTTCAGAACGATTCGACTGGGAAATTGGCAGAAATTTAGAGAAAAGAACCTGAAAAATTCATTTTTAAAAGCTTTTTGAACCTGAAAATAATTTTTTTCACCTTTTTTTTCGATTTTTTTTGTAAAATTTTTATTGGTTTTCAGCTATTTTCTATCATTTTCTAGACCTTTTTTCACTCGATTTTTCACAAATTTCRGCCAATTTTTCTTCCAGAACTTTCCAAAAATGCTCGGCACCCGTCTGAGCACCACTGGCAGATGCCTTCTGGCCGCCACGTCGCATGTTGAAGTCTCCGGAGGCATTCAGAAGCGACAAATGGGACGGAGACAGCCGAAACAGGGAAAACCGCCGATTTTGCCGCCGTCTAAGAAGGTGCGGCGATGGGAACTAGGAGAAAAATATTTAAAAAAAATAAAAAATTCCCAAATTTTTTCCTGAAAAATCTGAAAAAAGTCATTTTTGTTGCCTGAAAACTAGAAAAAATAAGGAATTCTGAAATTTTTCGTCGAAAAAACCCCAATATTTCCTTCCAGGTCCTCTATCACGTCGTCCACGCCCCGTGGCAGAAACCAGAAGACGTCGAGGAGCTTCTGTGGCGTCGTCACGCCTACAACAACGCCGTCGTCTCGCTGCGCGAGGTTTTCCGCGCGGAAATCGCTCAAAACGCGTCACACGGACAGGGTATCGAGGCGATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>257 119 109 102 79 74 73 71 62 54</canonical_bands>
                <polymorphic_bands>257 125 119 109 102 79 74 73 62</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTTCAGCTATTTTCTATCATT</pcr_primer_p1>
		<pcr_primer_p2>TCAGGCAACAAAAATGACTT</pcr_primer_p2>
		<pcr_amplicon_size>336</pcr_amplicon_size>
		<canonical_amplicon>GGTTTTCAGCTATTTTCTATCATTTTCTAGACCTTTTTTCACTCGATTTTTCACAAATTTCAGCCAATTTTTCTTCCAGAACTTTCCAAAAATGCTCGGCACCCGTCTGAGCACCACTGGCAGATGCCTTCTGGCCGCCACGTCGCATGTTGAAGTCTCCGGAGGCATTCAGAAGCGACAAATGGGACGGAGACAGCCGAAACAGGGAAAACCGCCGATTTTGCCGCCGTCTAAGAAGGTGCGGCGATGGGAACTAGGAGAAAAATATTTAAAAAAAATAAAAAATTCCCAAATTTTTTCCTGAAAAATCTGAAAAAAGTCATTTTTGTTGCCTGA</canonical_amplicon>
		<polymorphic_amplicon>GGTTTTCAGCTATTTTCTATCATTTTCTAGACCTTTTTTCACTCGATTTTTCACAAATTTCRGCCAATTTTTCTTCCAGAACTTTCCAAAAATGCTCGGCACCCGTCTGAGCACCACTGGCAGATGCCTTCTGGCCGCCACGTCGCATGTTGAAGTCTCCGGAGGCATTCAGAAGCGACAAATGGGACGGAGACAGCCGAAACAGGGAAAACCGCCGATTTTGCCGCCGTCTAAGAAGGTGCGGCGATGGGAACTAGGAGAAAAATATTTAAAAAAAATAAAAAATTCCCAAATTTTTTCCTGAAAAATCTGAAAAAAGTCATTTTTGTTGCCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32716</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>341624</contig_pos>
        <strand>+</strand>
        <context>AGAAAAAATA[A/T]GGAATTCTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAAAAATCTGAAAAAAGTCATTTTTGTTGCCTGAAAACTAGAAAAAATA</left_flank>
        <right_flank>GGAATTCTGAAATTTTTCGTCGAAAAAACCCCAATATTTCCTTCCAGGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGTTTTAAGCATTTCAGAACGATTCGACTGGGAAATTGGCAGAAATTTAGAGAAAAGAACCTGAAAAATTCATTTTTAAAAGCTTTTTGAACCTGAAAATAATTTTTTTCACCTTTTTTTTCGATTTTTTTTGTAAAATTTTTATTGGTTTTCAGCTATTTTCTATCATTTTCTAGACCTTTTTTCACTCGATTTTTCACAAATTTCAGCCAATTTTTCTTCCAGAACTTTCCAAAAATGCTCGGCACCCGTCTGAGCACCACTGGCAGATGCCTTCTGGCCGCCACGTCGCATGTTGAAGTCTCCGGAGGCATTCAGAAGCGACAAATGGGACGGAGACAGCCGAAACAGGGAAAACCGCCGATTTTGCCGCCGTCTAAGAAGGTGCGGCGATGGGAACTAGGAGAAAAATATTTAAAAAAAATAAAAAATTCCCAAATTTTTTCCTGAAAAATCTGAAAAAAGTCATTTTTGTTGCCTGAAAACTAGAAAAAATAAGGAATTCTGAAATTTTTCGTCGAAAAAACCCCAATATTTCCTTCCAGGTCCTCTATCACGTCGTCCACGCCCCGTGGCAGAAACCAGAAGACGTCGAGGAGCTTCTGTGGCGTCGTCACGCCTACAACAACGCCGTCGTCTCGCTGCGCGAGGTTTTCCGCGCGGAAATCGCTCAAAACGCGTCACACGGACAGGGTATCGAGGCGATGAAGGAGGCAGAAGCGTTGGAATTCGATGAGCTGATTTTGGAGAATCAGAAGAGAAACGAGGTAAAATTTTGGTGGTTTTATGAGGAAAAATGATGAAAAAGGCCTGAAATCCTTAAAAATCTCATCCAATCACCTAAAAACGCCCGAAATTCGCTTTAAAGACCCCAAAAACAACCCATTTCCAACTTTTTTCCTCTTGGTGGCCTAACTTTTTGAAGCCATGGCCTAGAAATCCAAAACTCGGCCAGAAAGCTTTCAGCATTCCCGAATAGTACAAACTCCTCAGAATCC</canonical>
            <polymorphic>AGAGTTTTAAGCATTTCAGAACGATTCGACTGGGAAATTGGCAGAAATTTAGAGAAAAGAACCTGAAAAATTCATTTTTAAAAGCTTTTTGAACCTGAAAATAATTTTTTTCACCTTTTTTTTCGATTTTTTTTGTAAAATTTTTATTGGTTTTCAGCTATTTTCTATCATTTTCTAGACCTTTTTTCACTCGATTTTTCACAAATTTCAGCCAATTTTTCTTCCAGAACTTTCCAAAAATGCTCGGCACCCGTCTGAGCACCACTGGCAGATGCCTTCTGGCCGCCACGTCGCATGTTGAAGTCTCCGGAGGCATTCAGAAGCGACAAATGGGACGGAGACAGCCGAAACAGGGAAAACCGCCGATTTTGCCGCCGTCTAAGAAGGTGCGGCGATGGGAACTAGGAGAAAAATATTTAAAAAAAATAAAAAATTCCCAAATTTTTTCCTGAAAAATCTGAAAAAAGTCATTTTTGTTGCCTGAAAACTAGAAAAAATAWGGAATTCTGAAATTTTTCGTCGAAAAAACCCCAATATTTCCTTCCAGGTCCTCTATCACGTCGTCCACGCCCCGTGGCAGAAACCAGAAGACGTCGAGGAGCTTCTGTGGCGTCGTCACGCCTACAACAACGCCGTCGTCTCGCTGCGCGAGGTTTTCCGCGCGGAAATCGCTCAAAACGCGTCACACGGACAGGGTATCGAGGCGATGAAGGAGGCAGAAGCGTTGGAATTCGATGAGCTGATTTTGGAGAATCAGAAGAGAAACGAGGTAAAATTTTGGTGGTTTTATGAGGAAAAATGATGAAAAAGGCCTGAAATCCTTAAAAATCTCATCCAATCACCTAAAAACGCCCGAAATTCGCTTTAAAGACCCCAAAAACAACCCATTTCCAACTTTTTTCCTCTTGGTGGCCTAACTTTTTGAAGCCATGGCCTAGAAATCCAAAACTCGGCCAGAAAGCTTTCAGCATTCCCGAATAGTACAAACTCCTCAGAATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCTGAAAAATCTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATAGAGGACCTGGAAGGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>112</pcr_amplicon_size>
		<canonical_amplicon>TTTCCTGAAAAATCTGAAAAAAGTCATTTTTGTTGCCTGAAAACTAGAAAAAATAAGGAATTCTGAAATTTTTCGTCGAAAAAACCCCAATATTTCCTTCCAGGTCCTCTAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCCTGAAAAATCTGAAAAAAGTCATTTTTGTTGCCTGAAAACTAGAAAAAATAWGGAATTCTGAAATTTTTCGTCGAAAAAACCCCAATATTTCCTTCCAGGTCCTCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32717</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>342690</contig_pos>
        <strand>+</strand>
        <context>AAACCCCAAA[C/T]AACCACTCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCTTTCCAAGCAGTTCAAAATCCTCAAAATCCTGTTAAAAAACCCCAAA</left_flank>
        <right_flank>AACCACTCATTTTTAGCCATTTTTCCTTGATGACCTAACTTTTTGAAGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATGGCCTAGGAATTCAAAACTCGGCCACAAGCTTCTAGCATCTTTCAAATAGCTCAAAATCCCCGAATTAGTGTCAAAAAACGATGAAAAAAAACCAATTTTCAACCATTTTCCCCTTGGTGGCCTAACTTTTTGAAGCCATGGCCTAGAAATCCAAAACTCGGCCACAAGCTTTTACTGCTTTTCATGTAGTTTAAAATCCTCGAAGTCCGGTCAAAAAACCCCATAAAAATGCCCATTTTTAGTATTTTTTGTTGGTGGCCTAACTTTTCCAAGTCATGGCCTAGAAATTCAAAACTAGGCCAGGAGGCTATTACTGCGTTCCAAGTAGCTCAAAATCCCCGAAATAGCGTTAAAAAACTATGAAAAACAACCCATTTTTCCCCTGGTGGCCTAACTTTTCCAAATGGTGGCCTAGGAATCCAAAACTCGGCCACAAGCTTTTACTGCTTTCCAAGCAGTTCAAAATCCTCAAAATCCTGTTAAAAAACCCCAAAAAACCACTCATTTTTAGCCATTTTTCCTTGATGACCTAACTTTTTGAAGCCATGGCCTAGAAATCACAAAACTAGGCCATAGCGATTCAGAAGTGATTTCTCTAAATTTCCAATGTTTTCAGACAAAACGAGCGGACCGTGAATTGCGAGAATCCGAGGCGACGAAGGAGACGAAACGAGTGATTCTAGATGAGATCCACGTGGAGCTGGAGAAGCGGAATCTGGAGAAGAAGGCGGCCGAGGAGGAGGTCAAACGGGCTATCGAACGATCGTCGGGCTTCGTGAATCGAGAGAATCTGGAAAAGAAGATTCTGGAGGCACTGGAGACGCCGACGATCTACGACTTCGCTATCGATCGAGCTGGAAATAAGTACTTCGTGCCACAACCGGTTAAATATCAAGAGGGAACACCGACACGACAGAAGGGACGGTTGTATGATCAGACACTGGGGACACAGATGGGAATGATGGAGGAAGCGGCTGCTAGTGGAGAGAACAGGC</canonical>
            <polymorphic>CCATGGCCTAGGAATTCAAAACTCGGCCACAAGCTTCTAGCATCTTTCAAATAGCTCAAAATCCCCGAATTAGTGTCAAAAAACGATGAAAAAAAACCAATTTTCAACCATTTTCCCCTTGGTGGCCTAACTTTTTGAAGCCATGGCCTAGAAATCCAAAACTCGGCCACAAGCTTTTACTGCTTTTCATGTAGTTTAAAATCCTCGAAGTCCGGTCAAAAAACCCCATAAAAATGCCCATTTTTAGTATTTTTTGTTGGTGGCCTAACTTTTCCAAGTCATGGCCTAGAAATTCAAAACTAGGCCAGGAGGCTATTACTGCGTTCCAAGTAGCTCAAAATCCCCGAAATAGCGTTAAAAAACTATGAAAAACAACCCATTTTTCCCCTGGTGGCCTAACTTTTCCAAATGGTGGCCTAGGAATCCAAAACTCGGCCACAAGCTTTTACTGCTTTCCAAGCAGTTCAAAATCCTCAAAATCCTGTTAAAAAACCCCAAAYAACCACTCATTTTTAGCCATTTTTCCTTGATGACCTAACTTTTTGAAGCCATGGCCTAGAAATCACAAAACTAGGCCATAGCGATTCAGAAGTGATTTCTCTAAATTTCCAATGTTTTCAGACAAAACGAGCGGACCGTGAATTGCGAGAATCCGAGGCGACGAAGGAGACGAAACGAGTGATTCTAGATGAGATCCACGTGGAGCTGGAGAAGCGGAATCTGGAGAAGAAGGCGGCCGAGGAGGAGGTCAAACGGGCTATCGAACGATCGTCGGGCTTCGTGAATCGAGAGAATCTGGAAAAGAAGATTCTGGAGGCACTGGAGACGCCGACGATCTACGACTTCGCTATCGATCGAGCTGGAAATAAGTACTTCGTGCCACAACCGGTTAAATATCAAGAGGGAACACCGACACGACAGAAGGGACGGTTGTATGATCAGACACTGGGGACACAGATGGGAATGATGGAGGAAGCGGCTGCTAGTGGAGAGAACAGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATGAAAAACAACCCATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CATTGGAAATTTAGAGAAATCAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTATGAAAAACAACCCATTTTTCCCCTGGTGGCCTAACTTTTCCAAATGGTGGCCTAGGAATCCAAAACTCGGCCACAAGCTTTTACTGCTTTCCAAGCAGTTCAAAATCCTCAAAATCCTGTTAAAAAACCCCAAAAAACCACTCATTTTTAGCCATTTTTCCTTGATGACCTAACTTTTTGAAGCCATGGCCTAGAAATCACAAAACTAGGCCATAGCGATTCAGAAGTGATTTCTCTAAATTTCCAATG</canonical_amplicon>
		<polymorphic_amplicon>CTATGAAAAACAACCCATTTTTCCCCTGGTGGCCTAACTTTTCCAAATGGTGGCCTAGGAATCCAAAACTCGGCCACAAGCTTTTACTGCTTTCCAAGCAGTTCAAAATCCTCAAAATCCTGTTAAAAAACCCCAAAYAACCACTCATTTTTAGCCATTTTTCCTTGATGACCTAACTTTTTGAAGCCATGGCCTAGAAATCACAAAACTAGGCCATAGCGATTCAGAAGTGATTTCTCTAAATTTCCAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32718</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>342847</contig_pos>
        <strand>+</strand>
        <context>GAGAATCCGA[A/G]GCGACGAAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCAATGTTTTCAGACAAAACGAGCGGACCGTGAATTGCGAGAATCCGA</left_flank>
        <right_flank>GCGACGAAGGAGACGAAACGAGTGATTCTAGATGAGATCCACGTGGAGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACTCGGCCACAAGCTTTTACTGCTTTTCATGTAGTTTAAAATCCTCGAAGTCCGGTCAAAAAACCCCATAAAAATGCCCATTTTTAGTATTTTTTGTTGGTGGCCTAACTTTTCCAAGTCATGGCCTAGAAATTCAAAACTAGGCCAGGAGGCTATTACTGCGTTCCAAGTAGCTCAAAATCCCCGAAATAGCGTTAAAAAACTATGAAAAACAACCCATTTTTCCCCTGGTGGCCTAACTTTTCCAAATGGTGGCCTAGGAATCCAAAACTCGGCCACAAGCTTTTACTGCTTTCCAAGCAGTTCAAAATCCTCAAAATCCTGTTAAAAAACCCCAAAAAACCACTCATTTTTAGCCATTTTTCCTTGATGACCTAACTTTTTGAAGCCATGGCCTAGAAATCACAAAACTAGGCCATAGCGATTCAGAAGTGATTTCTCTAAATTTCCAATGTTTTCAGACAAAACGAGCGGACCGTGAATTGCGAGAATCCGAGGCGACGAAGGAGACGAAACGAGTGATTCTAGATGAGATCCACGTGGAGCTGGAGAAGCGGAATCTGGAGAAGAAGGCGGCCGAGGAGGAGGTCAAACGGGCTATCGAACGATCGTCGGGCTTCGTGAATCGAGAGAATCTGGAAAAGAAGATTCTGGAGGCACTGGAGACGCCGACGATCTACGACTTCGCTATCGATCGAGCTGGAAATAAGTACTTCGTGCCACAACCGGTTAAATATCAAGAGGGAACACCGACACGACAGAAGGGACGGTTGTATGATCAGACACTGGGGACACAGATGGGAATGATGGAGGAAGCGGCTGCTAGTGGAGAGAACAGGCAGATGGAGCAGTAGAAGGTAGAAATGTGCGAAAAATTTGGAAAAATTGCACTAAAAATGATATTAATTACCTAAAAAATCACCTAAAAACCCCAAAAAAACAGCCCATTTTCCATAGGTAGGAGGTAGAAATCTGCGAAAAATTGCACTAAAAATGA</canonical>
            <polymorphic>AAAACTCGGCCACAAGCTTTTACTGCTTTTCATGTAGTTTAAAATCCTCGAAGTCCGGTCAAAAAACCCCATAAAAATGCCCATTTTTAGTATTTTTTGTTGGTGGCCTAACTTTTCCAAGTCATGGCCTAGAAATTCAAAACTAGGCCAGGAGGCTATTACTGCGTTCCAAGTAGCTCAAAATCCCCGAAATAGCGTTAAAAAACTATGAAAAACAACCCATTTTTCCCCTGGTGGCCTAACTTTTCCAAATGGTGGCCTAGGAATCCAAAACTCGGCCACAAGCTTTTACTGCTTTCCAAGCAGTTCAAAATCCTCAAAATCCTGTTAAAAAACCCCAAAAAACCACTCATTTTTAGCCATTTTTCCTTGATGACCTAACTTTTTGAAGCCATGGCCTAGAAATCACAAAACTAGGCCATAGCGATTCAGAAGTGATTTCTCTAAATTTCCAATGTTTTCAGACAAAACGAGCGGACCGTGAATTGCGAGAATCCGARGCGACGAAGGAGACGAAACGAGTGATTCTAGATGAGATCCACGTGGAGCTGGAGAAGCGGAATCTGGAGAAGAAGGCGGCCGAGGAGGAGGTCAAACGGGCTATCGAACGATCGTCGGGCTTCGTGAATCGAGAGAATCTGGAAAAGAAGATTCTGGAGGCACTGGAGACGCCGACGATCTACGACTTCGCTATCGATCGAGCTGGAAATAAGTACTTCGTGCCACAACCGGTTAAATATCAAGAGGGAACACCGACACGACAGAAGGGACGGTTGTATGATCAGACACTGGGGACACAGATGGGAATGATGGAGGAAGCGGCTGCTAGTGGAGAGAACAGGCAGATGGAGCAGTAGAAGGTAGAAATGTGCGAAAAATTTGGAAAAATTGCACTAAAAATGATATTAATTACCTAAAAAATCACCTAAAAACCCCAAAAAAACAGCCCATTTTCCATAGGTAGGAGGTAGAAATCTGCGAAAAATTGCACTAAAAATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>420 229 133 104 84 30</canonical_bands>
                <polymorphic_bands>420 229 188 133 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCTAGAAATCACAAAACTAGG</pcr_primer_p1>
		<pcr_primer_p2>TTTTCCAGATTCTCTCGATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCCTAGAAATCACAAAACTAGGCCATAGCGATTCAGAAGTGATTTCTCTAAATTTCCAATGTTTTCAGACAAAACGAGCGGACCGTGAATTGCGAGAATCCGAGGCGACGAAGGAGACGAAACGAGTGATTCTAGATGAGATCCACGTGGAGCTGGAGAAGCGGAATCTGGAGAAGAAGGCGGCCGAGGAGGAGGTCAAACGGGCTATCGAACGATCGTCGGGCTTCGTGAATCGAGAGAATCTGGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GCCTAGAAATCACAAAACTAGGCCATAGCGATTCAGAAGTGATTTCTCTAAATTTCCAATGTTTTCAGACAAAACGAGCGGACCGTGAATTGCGAGAATCCGARGCGACGAAGGAGACGAAACGAGTGATTCTAGATGAGATCCACGTGGAGCTGGAGAAGCGGAATCTGGAGAAGAAGGCGGCCGAGGAGGAGGTCAAACGGGCTATCGAACGATCGTCGGGCTTCGTGAATCGAGAGAATCTGGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32719</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>350977</contig_pos>
        <strand>+</strand>
        <context>TTGGCAATTA[C/G]AGCGAATTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCGATTTTTTGGCGGGTTTTCGAGCGGAATTTTTGATAAATTGGCAATTA</left_flank>
        <right_flank>AGCGAATTTGAGGCTCTCTGAAATTGGTAGATTGCAAAAATTTTTCAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCATTTGCTAAAATGGTCAAAAATTGACTAGAATTTACTACAAACTACCTGAAATTAACCAGAAATGGCTTAGAATGGCTTAAAATAGCCGAAAATGTGATTTTCAGCGATTTTGAGCGAAAGTCTCATTAGAGCGCGTTTGTTAAAATGGTCCAAAATTGACTAAAATAGATCCCAAACCACCTGAAGTCCATTCTAAATGGCTGAAAATAGCCCAAAGTAGACGAAAATTTCATTTTCAGCGATTTTCCAGGAAATTCTCATTAGAGCACATTTGCTACTTTTTTCAGATCACCGACTCCCGTGAGACCATCATTGAAAAGTGCCAAAAAGCGCAAAGTGACACGGCTGGCGCTGTGACTTATGATAAGAAGAATCGATTGGCTGTGTCGAATTTGGTAGGTCAAAGAATTGGAAAATGCGCTCCAATGAGAAAAGTTGGGAAAAGTCGATTTTTTGGCGGGTTTTCGAGCGGAATTTTTGATAAATTGGCAATTAGAGCGAATTTGAGGCTCTCTGAAATTGGTAGATTGCAAAAATTTTTCAAAAAAATGTGGAAAACGCGCTCCAATGAGAAAAGTTGGGAAAATTCGATTTTTTTTTGGCGGTTTTTTGAATTCCCGCTCAAATTTTTCGGCAATTCTCAACAGAGCGAATTTGCAGCTCGATCTCTACTCGGCGATCACCAAGACGCCACTCTCGGAAATCGACTATTCCAGCTGGTCGACGCTGGACCTGAAAATGAATTTGGCCGAAAAAATCGATAATCGGCTGGAGCCGATTAGAGAGAAATTCGAGGAGCTGGAGAATAGTGAAGAGGTGCGGGCTGGCGGGAATTTGAAGTTTTCAAGTTTTCAAGAAAAAGAAAAAATTTTTTTTTGAAAAATATCGATTTTTTGGAATTTTTCGAAAATTTTCAAATTTTTCAAAAATCGATTTTTTTTTCAGATCGACAAAATTCTAGAACGGAATGGCGACGCGGCGCGAGAAATTGCTGAG</canonical>
            <polymorphic>CGCATTTGCTAAAATGGTCAAAAATTGACTAGAATTTACTACAAACTACCTGAAATTAACCAGAAATGGCTTAGAATGGCTTAAAATAGCCGAAAATGTGATTTTCAGCGATTTTGAGCGAAAGTCTCATTAGAGCGCGTTTGTTAAAATGGTCCAAAATTGACTAAAATAGATCCCAAACCACCTGAAGTCCATTCTAAATGGCTGAAAATAGCCCAAAGTAGACGAAAATTTCATTTTCAGCGATTTTCCAGGAAATTCTCATTAGAGCACATTTGCTACTTTTTTCAGATCACCGACTCCCGTGAGACCATCATTGAAAAGTGCCAAAAAGCGCAAAGTGACACGGCTGGCGCTGTGACTTATGATAAGAAGAATCGATTGGCTGTGTCGAATTTGGTAGGTCAAAGAATTGGAAAATGCGCTCCAATGAGAAAAGTTGGGAAAAGTCGATTTTTTGGCGGGTTTTCGAGCGGAATTTTTGATAAATTGGCAATTASAGCGAATTTGAGGCTCTCTGAAATTGGTAGATTGCAAAAATTTTTCAAAAAAATGTGGAAAACGCGCTCCAATGAGAAAAGTTGGGAAAATTCGATTTTTTTTTGGCGGTTTTTTGAATTCCCGCTCAAATTTTTCGGCAATTCTCAACAGAGCGAATTTGCAGCTCGATCTCTACTCGGCGATCACCAAGACGCCACTCTCGGAAATCGACTATTCCAGCTGGTCGACGCTGGACCTGAAAATGAATTTGGCCGAAAAAATCGATAATCGGCTGGAGCCGATTAGAGAGAAATTCGAGGAGCTGGAGAATAGTGAAGAGGTGCGGGCTGGCGGGAATTTGAAGTTTTCAAGTTTTCAAGAAAAAGAAAAAATTTTTTTTTGAAAAATATCGATTTTTTGGAATTTTTCGAAAATTTTCAAATTTTTCAAAAATCGATTTTTTTTTCAGATCGACAAAATTCTAGAACGGAATGGCGACGCGGCGCGAGAAATTGCTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAGAAAAGTTGGGAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GTAGAGATCGAGCTGCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATGAGAAAAGTTGGGAAAAGTCGATTTTTTGGCGGGTTTTCGAGCGGAATTTTTGATAAATTGGCAATTAGAGCGAATTTGAGGCTCTCTGAAATTGGTAGATTGCAAAAATTTTTCAAAAAAATGTGGAAAACGCGCTCCAATGAGAAAAGTTGGGAAAATTCGATTTTTTTTTGGCGGTTTTTTGAATTCCCGCTCAAATTTTTCGGCAATTCTCAACAGAGCGAATTTGCAGCTCGATCTCTAC</canonical_amplicon>
		<polymorphic_amplicon>AATGAGAAAAGTTGGGAAAAGTCGATTTTTTGGCGGGTTTTCGAGCGGAATTTTTGATAAATTGGCAATTASAGCGAATTTGAGGCTCTCTGAAATTGGTAGATTGCAAAAATTTTTCAAAAAAATGTGGAAAACGCGCTCCAATGAGAAAAGTTGGGAAAATTCGATTTTTTTTTGGCGGTTTTTTGAATTCCCGCTCAAATTTTTCGGCAATTCTCAACAGAGCGAATTTGCAGCTCGATCTCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32720</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>351003</contig_pos>
        <strand>+</strand>
        <context>CTCTGAAATT[A/G]GTAGATTGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATTTTTGATAAATTGGCAATTAGAGCGAATTTGAGGCTCTCTGAAATT</left_flank>
        <right_flank>GTAGATTGCAAAAATTTTTCAAAAAAATGTGGAAAACGCGCTCCAATGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTAGAATTTACTACAAACTACCTGAAATTAACCAGAAATGGCTTAGAATGGCTTAAAATAGCCGAAAATGTGATTTTCAGCGATTTTGAGCGAAAGTCTCATTAGAGCGCGTTTGTTAAAATGGTCCAAAATTGACTAAAATAGATCCCAAACCACCTGAAGTCCATTCTAAATGGCTGAAAATAGCCCAAAGTAGACGAAAATTTCATTTTCAGCGATTTTCCAGGAAATTCTCATTAGAGCACATTTGCTACTTTTTTCAGATCACCGACTCCCGTGAGACCATCATTGAAAAGTGCCAAAAAGCGCAAAGTGACACGGCTGGCGCTGTGACTTATGATAAGAAGAATCGATTGGCTGTGTCGAATTTGGTAGGTCAAAGAATTGGAAAATGCGCTCCAATGAGAAAAGTTGGGAAAAGTCGATTTTTTGGCGGGTTTTCGAGCGGAATTTTTGATAAATTGGCAATTAGAGCGAATTTGAGGCTCTCTGAAATTGGTAGATTGCAAAAATTTTTCAAAAAAATGTGGAAAACGCGCTCCAATGAGAAAAGTTGGGAAAATTCGATTTTTTTTTGGCGGTTTTTTGAATTCCCGCTCAAATTTTTCGGCAATTCTCAACAGAGCGAATTTGCAGCTCGATCTCTACTCGGCGATCACCAAGACGCCACTCTCGGAAATCGACTATTCCAGCTGGTCGACGCTGGACCTGAAAATGAATTTGGCCGAAAAAATCGATAATCGGCTGGAGCCGATTAGAGAGAAATTCGAGGAGCTGGAGAATAGTGAAGAGGTGCGGGCTGGCGGGAATTTGAAGTTTTCAAGTTTTCAAGAAAAAGAAAAAATTTTTTTTTGAAAAATATCGATTTTTTGGAATTTTTCGAAAATTTTCAAATTTTTCAAAAATCGATTTTTTTTTCAGATCGACAAAATTCTAGAACGGAATGGCGACGCGGCGCGAGAAATTGCTGAGAAGAATCTCAAGGAAATTCGTCGGAT</canonical>
            <polymorphic>GACTAGAATTTACTACAAACTACCTGAAATTAACCAGAAATGGCTTAGAATGGCTTAAAATAGCCGAAAATGTGATTTTCAGCGATTTTGAGCGAAAGTCTCATTAGAGCGCGTTTGTTAAAATGGTCCAAAATTGACTAAAATAGATCCCAAACCACCTGAAGTCCATTCTAAATGGCTGAAAATAGCCCAAAGTAGACGAAAATTTCATTTTCAGCGATTTTCCAGGAAATTCTCATTAGAGCACATTTGCTACTTTTTTCAGATCACCGACTCCCGTGAGACCATCATTGAAAAGTGCCAAAAAGCGCAAAGTGACACGGCTGGCGCTGTGACTTATGATAAGAAGAATCGATTGGCTGTGTCGAATTTGGTAGGTCAAAGAATTGGAAAATGCGCTCCAATGAGAAAAGTTGGGAAAAGTCGATTTTTTGGCGGGTTTTCGAGCGGAATTTTTGATAAATTGGCAATTAGAGCGAATTTGAGGCTCTCTGAAATTRGTAGATTGCAAAAATTTTTCAAAAAAATGTGGAAAACGCGCTCCAATGAGAAAAGTTGGGAAAATTCGATTTTTTTTTGGCGGTTTTTTGAATTCCCGCTCAAATTTTTCGGCAATTCTCAACAGAGCGAATTTGCAGCTCGATCTCTACTCGGCGATCACCAAGACGCCACTCTCGGAAATCGACTATTCCAGCTGGTCGACGCTGGACCTGAAAATGAATTTGGCCGAAAAAATCGATAATCGGCTGGAGCCGATTAGAGAGAAATTCGAGGAGCTGGAGAATAGTGAAGAGGTGCGGGCTGGCGGGAATTTGAAGTTTTCAAGTTTTCAAGAAAAAGAAAAAATTTTTTTTTGAAAAATATCGATTTTTTGGAATTTTTCGAAAATTTTCAAATTTTTCAAAAATCGATTTTTTTTTCAGATCGACAAAATTCTAGAACGGAATGGCGACGCGGCGCGAGAAATTGCTGAGAAGAATCTCAAGGAAATTCGTCGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAGAAAAGTTGGGAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GTAGAGATCGAGCTGCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATGAGAAAAGTTGGGAAAAGTCGATTTTTTGGCGGGTTTTCGAGCGGAATTTTTGATAAATTGGCAATTAGAGCGAATTTGAGGCTCTCTGAAATTGGTAGATTGCAAAAATTTTTCAAAAAAATGTGGAAAACGCGCTCCAATGAGAAAAGTTGGGAAAATTCGATTTTTTTTTGGCGGTTTTTTGAATTCCCGCTCAAATTTTTCGGCAATTCTCAACAGAGCGAATTTGCAGCTCGATCTCTAC</canonical_amplicon>
		<polymorphic_amplicon>AATGAGAAAAGTTGGGAAAAGTCGATTTTTTGGCGGGTTTTCGAGCGGAATTTTTGATAAATTGGCAATTAGAGCGAATTTGAGGCTCTCTGAAATTRGTAGATTGCAAAAATTTTTCAAAAAAATGTGGAAAACGCGCTCCAATGAGAAAAGTTGGGAAAATTCGATTTTTTTTTGGCGGTTTTTTGAATTCCCGCTCAAATTTTTCGGCAATTCTCAACAGAGCGAATTTGCAGCTCGATCTCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32721</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>351024</contig_pos>
        <strand>+</strand>
        <context>AAAATTTTTC[A/G]AAAAAATGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAGAGCGAATTTGAGGCTCTCTGAAATTGGTAGATTGCAAAAATTTTTC</left_flank>
        <right_flank>AAAAAATGTGGAAAACGCGCTCCAATGAGAAAAGTTGGGAAAATTCGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTGAAATTAACCAGAAATGGCTTAGAATGGCTTAAAATAGCCGAAAATGTGATTTTCAGCGATTTTGAGCGAAAGTCTCATTAGAGCGCGTTTGTTAAAATGGTCCAAAATTGACTAAAATAGATCCCAAACCACCTGAAGTCCATTCTAAATGGCTGAAAATAGCCCAAAGTAGACGAAAATTTCATTTTCAGCGATTTTCCAGGAAATTCTCATTAGAGCACATTTGCTACTTTTTTCAGATCACCGACTCCCGTGAGACCATCATTGAAAAGTGCCAAAAAGCGCAAAGTGACACGGCTGGCGCTGTGACTTATGATAAGAAGAATCGATTGGCTGTGTCGAATTTGGTAGGTCAAAGAATTGGAAAATGCGCTCCAATGAGAAAAGTTGGGAAAAGTCGATTTTTTGGCGGGTTTTCGAGCGGAATTTTTGATAAATTGGCAATTAGAGCGAATTTGAGGCTCTCTGAAATTGGTAGATTGCAAAAATTTTTCAAAAAAATGTGGAAAACGCGCTCCAATGAGAAAAGTTGGGAAAATTCGATTTTTTTTTGGCGGTTTTTTGAATTCCCGCTCAAATTTTTCGGCAATTCTCAACAGAGCGAATTTGCAGCTCGATCTCTACTCGGCGATCACCAAGACGCCACTCTCGGAAATCGACTATTCCAGCTGGTCGACGCTGGACCTGAAAATGAATTTGGCCGAAAAAATCGATAATCGGCTGGAGCCGATTAGAGAGAAATTCGAGGAGCTGGAGAATAGTGAAGAGGTGCGGGCTGGCGGGAATTTGAAGTTTTCAAGTTTTCAAGAAAAAGAAAAAATTTTTTTTTGAAAAATATCGATTTTTTGGAATTTTTCGAAAATTTTCAAATTTTTCAAAAATCGATTTTTTTTTCAGATCGACAAAATTCTAGAACGGAATGGCGACGCGGCGCGAGAAATTGCTGAGAAGAATCTCAAGGAAATTCGTCGGATTGTTGGATTCTTGTGATTTTG</canonical>
            <polymorphic>ACCTGAAATTAACCAGAAATGGCTTAGAATGGCTTAAAATAGCCGAAAATGTGATTTTCAGCGATTTTGAGCGAAAGTCTCATTAGAGCGCGTTTGTTAAAATGGTCCAAAATTGACTAAAATAGATCCCAAACCACCTGAAGTCCATTCTAAATGGCTGAAAATAGCCCAAAGTAGACGAAAATTTCATTTTCAGCGATTTTCCAGGAAATTCTCATTAGAGCACATTTGCTACTTTTTTCAGATCACCGACTCCCGTGAGACCATCATTGAAAAGTGCCAAAAAGCGCAAAGTGACACGGCTGGCGCTGTGACTTATGATAAGAAGAATCGATTGGCTGTGTCGAATTTGGTAGGTCAAAGAATTGGAAAATGCGCTCCAATGAGAAAAGTTGGGAAAAGTCGATTTTTTGGCGGGTTTTCGAGCGGAATTTTTGATAAATTGGCAATTAGAGCGAATTTGAGGCTCTCTGAAATTGGTAGATTGCAAAAATTTTTCRAAAAAATGTGGAAAACGCGCTCCAATGAGAAAAGTTGGGAAAATTCGATTTTTTTTTGGCGGTTTTTTGAATTCCCGCTCAAATTTTTCGGCAATTCTCAACAGAGCGAATTTGCAGCTCGATCTCTACTCGGCGATCACCAAGACGCCACTCTCGGAAATCGACTATTCCAGCTGGTCGACGCTGGACCTGAAAATGAATTTGGCCGAAAAAATCGATAATCGGCTGGAGCCGATTAGAGAGAAATTCGAGGAGCTGGAGAATAGTGAAGAGGTGCGGGCTGGCGGGAATTTGAAGTTTTCAAGTTTTCAAGAAAAAGAAAAAATTTTTTTTTGAAAAATATCGATTTTTTGGAATTTTTCGAAAATTTTCAAATTTTTCAAAAATCGATTTTTTTTTCAGATCGACAAAATTCTAGAACGGAATGGCGACGCGGCGCGAGAAATTGCTGAGAAGAATCTCAAGGAAATTCGTCGGATTGTTGGATTCTTGTGATTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAGAAAAGTTGGGAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GTAGAGATCGAGCTGCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATGAGAAAAGTTGGGAAAAGTCGATTTTTTGGCGGGTTTTCGAGCGGAATTTTTGATAAATTGGCAATTAGAGCGAATTTGAGGCTCTCTGAAATTGGTAGATTGCAAAAATTTTTCAAAAAAATGTGGAAAACGCGCTCCAATGAGAAAAGTTGGGAAAATTCGATTTTTTTTTGGCGGTTTTTTGAATTCCCGCTCAAATTTTTCGGCAATTCTCAACAGAGCGAATTTGCAGCTCGATCTCTAC</canonical_amplicon>
		<polymorphic_amplicon>AATGAGAAAAGTTGGGAAAAGTCGATTTTTTGGCGGGTTTTCGAGCGGAATTTTTGATAAATTGGCAATTAGAGCGAATTTGAGGCTCTCTGAAATTGGTAGATTGCAAAAATTTTTCRAAAAAATGTGGAAAACGCGCTCCAATGAGAAAAGTTGGGAAAATTCGATTTTTTTTTGGCGGTTTTTTGAATTCCCGCTCAAATTTTTCGGCAATTCTCAACAGAGCGAATTTGCAGCTCGATCTCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32722</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>352771</contig_pos>
        <strand>+</strand>
        <context>GTAAATTCAA[A/C]TTTTTTCGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTAGGTCGTTTTTTTTTCAGATTTCTGGGATTTTTGAGCTGTAAATTCAA</left_flank>
        <right_flank>TTTTTTCGATTTTTTTTCGAATTTAGAGAAGAGAAATTTATAATTAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGTGACATTTTTGACTACTTTTAGCCATTTCAAGCAATTTCTAGTGAATTTCAGGTAGTTTAGAGACAATTCTAGTCAATTTTGGACAATTTTAGCAAATGCGCTCTACCGAAAATTTCGTTAAAAATCGCTAGAAACCACGTTTCCGGCTATTTCAGACCATTCTGAGCAATTTTTAGTTAATTTCAGGTAGTTTGGAGTCATGTTTGGACAATTTTAGAAAATGCGCTCTACCGAAAATTTCGTTAAAAATCGCTTAAAATCAAAATTTTGGATATTCAGAATCATCTTAAGCCTATGGAATTGGATTTCAAGCCGTTTCAAGTCGATTTCAGTAATTTTTGGGCAATTTTAGGCCAATTTTAGCAAACGCGCTCTATTGAGACTTTTTGTCTAAAATCGCTTAAAAATGTCATTTTTGGCTATTTTAAGCGATTTTTCATGGGTTTAGGTCGTTTTTTTTTCAGATTTCTGGGATTTTTGAGCTGTAAATTCAATTTTTTTCGATTTTTTTTCGAATTTAGAGAAGAGAAATTTATAATTAAAATTTTACAAAAAAAAGAAAAAGAAAAATGCTTTTAAGACATAAAAAATACATTTGAGGGGTTGGGGGGAATGCAAAATATACGGTTTTTAAAGGGATTTTTAGGAGGGAAAAAGTGAAAATTTCAGAGAAAATAAAGCTTGGGAGATTATAGAGGGGGGACGAAAAATAGGGGGAAAAACGAGATTTTCAGAGTTTTTAGAGCAAAAAATATGGAAAAAATGCCACTTTTTAAGAAAAAAATGACTGAAGATTTTCAAGCTCAAAAAAGTCCCAAAAATCTCAAATTTCCCATTACAGTAACCTCAAAATTATCAAAATTCGCTCTAATGAGCGACAGCATGATTTCCATTGATGATAGCGAGAAGAGCGTCACGATAGGCTCCCGAGGTGTCGCCCTTGACCATATCAGCCAAGCTCTTCTGGTAGAGCTCGGCGAACTCGTTCTTGATGA</canonical>
            <polymorphic>AAAGTGACATTTTTGACTACTTTTAGCCATTTCAAGCAATTTCTAGTGAATTTCAGGTAGTTTAGAGACAATTCTAGTCAATTTTGGACAATTTTAGCAAATGCGCTCTACCGAAAATTTCGTTAAAAATCGCTAGAAACCACGTTTCCGGCTATTTCAGACCATTCTGAGCAATTTTTAGTTAATTTCAGGTAGTTTGGAGTCATGTTTGGACAATTTTAGAAAATGCGCTCTACCGAAAATTTCGTTAAAAATCGCTTAAAATCAAAATTTTGGATATTCAGAATCATCTTAAGCCTATGGAATTGGATTTCAAGCCGTTTCAAGTCGATTTCAGTAATTTTTGGGCAATTTTAGGCCAATTTTAGCAAACGCGCTCTATTGAGACTTTTTGTCTAAAATCGCTTAAAAATGTCATTTTTGGCTATTTTAAGCGATTTTTCATGGGTTTAGGTCGTTTTTTTTTCAGATTTCTGGGATTTTTGAGCTGTAAATTCAAMTTTTTTCGATTTTTTTTCGAATTTAGAGAAGAGAAATTTATAATTAAAATTTTACAAAAAAAAGAAAAAGAAAAATGCTTTTAAGACATAAAAAATACATTTGAGGGGTTGGGGGGAATGCAAAATATACGGTTTTTAAAGGGATTTTTAGGAGGGAAAAAGTGAAAATTTCAGAGAAAATAAAGCTTGGGAGATTATAGAGGGGGGACGAAAAATAGGGGGAAAAACGAGATTTTCAGAGTTTTTAGAGCAAAAAATATGGAAAAAATGCCACTTTTTAAGAAAAAAATGACTGAAGATTTTCAAGCTCAAAAAAGTCCCAAAAATCTCAAATTTCCCATTACAGTAACCTCAAAATTATCAAAATTCGCTCTAATGAGCGACAGCATGATTTCCATTGATGATAGCGAGAAGAGCGTCACGATAGGCTCCCGAGGTGTCGCCCTTGACCATATCAGCCAAGCTCTTCTGGTAGAGCTCGGCGAACTCGTTCTTGATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>165 136 132 119 57 37 35 35 31 28 26 26 24 22 21 15 11 11 11 11 10 10 9 7 6 5</canonical_bands>
                <polymorphic_bands>165 136 132 119 57 37 35 35 31 28 27 26 26 24 21 15 11 11 11 11 10 10 9 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTCTAAAATCGCTTAAAA</pcr_primer_p1>
		<pcr_primer_p2>TAAAAACCGTATATTTTGCATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTCTAAAATCGCTTAAAAATGTCATTTTTGGCTATTTTAAGCGATTTTTCATGGGTTTAGGTCGTTTTTTTTTCAGATTTCTGGGATTTTTGAGCTGTAAATTCAATTTTTTTCGATTTTTTTTCGAATTTAGAGAAGAGAAATTTATAATTAAAATTTTACAAAAAAAAGAAAAAGAAAAATGCTTTTAAGACATAAAAAATACATTTGAGGGGTTGGGGGGAATGCAAAATATACGGTTTTTA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTCTAAAATCGCTTAAAAATGTCATTTTTGGCTATTTTAAGCGATTTTTCATGGGTTTAGGTCGTTTTTTTTTCAGATTTCTGGGATTTTTGAGCTGTAAATTCAAMTTTTTTCGATTTTTTTTCGAATTTAGAGAAGAGAAATTTATAATTAAAATTTTACAAAAAAAAGAAAAAGAAAAATGCTTTTAAGACATAAAAAATACATTTGAGGGGTTGGGGGGAATGCAAAATATACGGTTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32723</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>361628</contig_pos>
        <strand>+</strand>
        <context>CTATATACTR[A/G]ACTTTATTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTG</left_flank>
        <right_flank>ACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACCGCCGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAGAAGAAAATCGAATTACGGCGGTAAAAAAGGGCGGCAAATGAAAGGAATTGTTGACCTCATGCTAAAGAAGAGGGGACGAGTAAAAAAAGAAAATAAATAAGAAGAAAAAGAAGACCAGTTGATCTTTGATCAGTGAGACTTCAAAAAGAAGACAACATAAATAACTGGTAAGCTATAGAAGACACTAGAGTTGTTTACGATGACTGCGCAGCTCATTAGGCATCAGTAGGGAACCAACCCCGTAGCTCAGCGAAAACTCGTCACAATTATTTGAATTTTACATTGTTTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTAGAGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACCGCCGCTACCGAATTGAGCTGCGCGGTCGACTTCGGCACGTAGCTTAGCGAAAACAGCGCGTAGCTCAGCGATAGCTTGTTCAAAATTAGTCAACGTTAATTTTTTTTGTAGCCCTTAACTAGCTGTACATTTTCCAGGTTAGATTGTTTAAAAATATTGATTTTTAAAAAAGTTATGAGCTAAAACCTGCCAAGGTTCCCAAAAATAGGTTTGAAAAATCGAAAATTCGAAATTCAAAAGTTCAAATTTGGCGCCAAACCAATGTACTTCAACACCGGAAACTGTGACTCTGACCTTTTTCCATATATATTGTTTGTATGTGTACACGAAAAACGAACAAACATTGAATGGGGATTTCAATGAAAAGCGAGAGATAAGGGGAAATGAAGAGATGCAGATAAAGAAGAGAAAGATGGCGAAGCGCCAGCGGGTAAAAGAGTAAACAACTTGTTGAAG</canonical>
            <polymorphic>AGAAGAAGAAAATCGAATTACGGCGGTAAAAAAGGGCGGCAAATGAAAGGAATTGTTGACCTCATGCTAAAGAAGAGGGGACGAGTAAAAAAAGAAAATAAATAAGAAGAAAAAGAAGACCAGTTGATCTTTGATCAGTGAGACTTCAAAAAGAAGACAACATAAATAACTGGTAAGCTATAGAAGACACTAGAGTTGTTTACGATGACTGCGCAGCTCATTAGGCATCAGTAGGGAACCAACCCCGTAGCTCAGCGAAAACTCGTCACAATTATTTGAATTTTACATTGTTTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTAGAGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGRACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACCGCCGCTACCGAATTGAGCTGCGCGGTCGACTTCGGCACGTAGCTTAGCGAAAACAGCGCGTAGCTCAGCGATAGCTTGTTCAAAATTAGTCAACGTTAATTTTTTTTGTAGCCCTTAACTAGCTGTACATTTTCCAGGTTAGATTGTTTAAAAATATTGATTTTTAAAAAAGTTATGAGCTAAAACCTGCCAAGGTTCCCAAAAATAGGTTTGAAAAATCGAAAATTCGAAATTCAAAAGTTCAAATTTGGCGCCAAACCAATGTACTTCAACACCGGAAACTGTGACTCTGACCTTTTTCCATATATATTGTTTGTATGTGTACACGAAAAACGAACAAACATTGAATGGGGATTTCAATGAAAAGCGAGAGATAAGGGGAAATGAAGAGATGCAGATAAAGAAGAGAAAGATGGCGAAGCGCCAGCGGGTAAAAGAGTAAACAACTTGTTGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>322 178 170 139 133 58</canonical_bands>
                <polymorphic_bands>348 322 139 133 58</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>329 320 178 173</canonical_bands>
                <polymorphic_bands>507 320 173</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>320 178 170 139 135 58</canonical_bands>
                <polymorphic_bands>348 320 139 135 58</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGCTCAGCGAAAACTTGT</pcr_primer_p1>
		<pcr_primer_p2>TTAACGTTGACTAATTTTGAACA</pcr_primer_p2>
		<pcr_amplicon_size>218</pcr_amplicon_size>
		<canonical_amplicon>GTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACCGCCGCTACCGAATTGAGCTGCGCGGTCGACTTCGGCACGTAGCTTAGCGAAAACAGCGCGTAGCTCAGCGATAGCTTGTTCAAAATTAGTCAACGTTAA</canonical_amplicon>
		<polymorphic_amplicon>GTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGRACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACCGCCGCTACCGAATTGAGCTGCGCGGTCGACTTCGGCACGTAGCTTAGCGAAAACAGCGCGTAGCTCAGCGATAGCTTGTTCAAAATTAGTCAACGTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32724</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>361644</contig_pos>
        <strand>+</strand>
        <context>ATTTGAGCTY[C/T]AATAATTGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTC</left_flank>
        <right_flank>AATAATTGAGTTTGAAGCTAGTTACACCGCCGCTACCGAATTGAGCTGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTACGGCGGTAAAAAAGGGCGGCAAATGAAAGGAATTGTTGACCTCATGCTAAAGAAGAGGGGACGAGTAAAAAAAGAAAATAAATAAGAAGAAAAAGAAGACCAGTTGATCTTTGATCAGTGAGACTTCAAAAAGAAGACAACATAAATAACTGGTAAGCTATAGAAGACACTAGAGTTGTTTACGATGACTGCGCAGCTCATTAGGCATCAGTAGGGAACCAACCCCGTAGCTCAGCGAAAACTCGTCACAATTATTTGAATTTTACATTGTTTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTAGAGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACCGCCGCTACCGAATTGAGCTGCGCGGTCGACTTCGGCACGTAGCTTAGCGAAAACAGCGCGTAGCTCAGCGATAGCTTGTTCAAAATTAGTCAACGTTAATTTTTTTTGTAGCCCTTAACTAGCTGTACATTTTCCAGGTTAGATTGTTTAAAAATATTGATTTTTAAAAAAGTTATGAGCTAAAACCTGCCAAGGTTCCCAAAAATAGGTTTGAAAAATCGAAAATTCGAAATTCAAAAGTTCAAATTTGGCGCCAAACCAATGTACTTCAACACCGGAAACTGTGACTCTGACCTTTTTCCATATATATTGTTTGTATGTGTACACGAAAAACGAACAAACATTGAATGGGGATTTCAATGAAAAGCGAGAGATAAGGGGAAATGAAGAGATGCAGATAAAGAAGAGAAAGATGGCGAAGCGCCAGCGGGTAAAAGAGTAAACAACTTGTTGAAGAAACGAAATTTAGAAA</canonical>
            <polymorphic>ATTACGGCGGTAAAAAAGGGCGGCAAATGAAAGGAATTGTTGACCTCATGCTAAAGAAGAGGGGACGAGTAAAAAAAGAAAATAAATAAGAAGAAAAAGAAGACCAGTTGATCTTTGATCAGTGAGACTTCAAAAAGAAGACAACATAAATAACTGGTAAGCTATAGAAGACACTAGAGTTGTTTACGATGACTGCGCAGCTCATTAGGCATCAGTAGGGAACCAACCCCGTAGCTCAGCGAAAACTCGTCACAATTATTTGAATTTTACATTGTTTTGTAGCCCTTAAAAAGTTCTATACACTGTACATTATTTGAGCTTAAAAGGTAGAGCTTAAAGCAAGTTACGCCGCCGCAACCGATTTGAGCTGCGCAGGCGACGCCGGCCTGTAGCTCAGCGAAGACGCCGCGTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTCYAATAATTGAGTTTGAAGCTAGTTACACCGCCGCTACCGAATTGAGCTGCGCGGTCGACTTCGGCACGTAGCTTAGCGAAAACAGCGCGTAGCTCAGCGATAGCTTGTTCAAAATTAGTCAACGTTAATTTTTTTTGTAGCCCTTAACTAGCTGTACATTTTCCAGGTTAGATTGTTTAAAAATATTGATTTTTAAAAAAGTTATGAGCTAAAACCTGCCAAGGTTCCCAAAAATAGGTTTGAAAAATCGAAAATTCGAAATTCAAAAGTTCAAATTTGGCGCCAAACCAATGTACTTCAACACCGGAAACTGTGACTCTGACCTTTTTCCATATATATTGTTTGTATGTGTACACGAAAAACGAACAAACATTGAATGGGGATTTCAATGAAAAGCGAGAGATAAGGGGAAATGAAGAGATGCAGATAAAGAAGAGAAAGATGGCGAAGCGCCAGCGGGTAAAAGAGTAAACAACTTGTTGAAGAAACGAAATTTAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGCTCAGCGAAAACTTGT</pcr_primer_p1>
		<pcr_primer_p2>TTAACGTTGACTAATTTTGAACA</pcr_primer_p2>
		<pcr_amplicon_size>218</pcr_amplicon_size>
		<canonical_amplicon>GTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTCAAATAATTGAGTTTGAAGCTAGTTACACCGCCGCTACCGAATTGAGCTGCGCGGTCGACTTCGGCACGTAGCTTAGCGAAAACAGCGCGTAGCTCAGCGATAGCTTGTTCAAAATTAGTCAACGTTAA</canonical_amplicon>
		<polymorphic_amplicon>GTAGCTCAGCGAAAACTTGTCACAATTATTTGAATTTTACATTGTTTGTATCCCTTAAAAAGTTCTATATACTGTACTTTATTTGAGCTCYAATAATTGAGTTTGAAGCTAGTTACACCGCCGCTACCGAATTGAGCTGCGCGGTCGACTTCGGCACGTAGCTTAGCGAAAACAGCGCGTAGCTCAGCGATAGCTTGTTCAAAATTAGTCAACGTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32725</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>362835</contig_pos>
        <strand>+</strand>
        <context>AAATAGCAAC[A/T]AAAAAAAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTACAAAAAAAAATTTTATTTTTGGTTTTTGAGCTCTAAAATAGCAAC</left_flank>
        <right_flank>AAAAAAAAACAAATATTTTTTGGGGAATACCCCAAAAAAACATTTGGGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGAGCTTCATCTTTGTAGTTGACACTTTTTTCTGAAAATTGACACCTAGAGAGATAGAGACGCAGACAGTTAGAGTGTCTCACTGTCTGCGCTTCCTATAGCTATATCTATATCTCGGCTCCTAGGAAGGCTAGAAAAATGGTTTTCAGCGCAGAATGTGTTGAATTCTTCAAATTCTTGTTTTTTATTGAATTTGCAATATTTTGAGCTAAAAACCACTTTTCTAGCTATTCTAGAATTCAAGATATAACTATTTGAAGGCGAGGAGACGCAGGAAGAGAGATAGTCTAACTGTCCGCGTCTCTATCTCTTCACTTATCAATTTTTTTTAAAGTTGTTAATTACAAAAATGTAGAAAATTATATTTCACATATTTTATCAGTTGCCAACATTTTGATATCTTAATTGAGAGCAAAGATAATTGGGGTCAAAGTCATGACTTGTAACAATTACAAAAAAAAATTTTATTTTTGGTTTTTGAGCTCTAAAATAGCAACAAAAAAAAAACAAATATTTTTTGGGGAATACCCCAAAAAAACATTTGGGGTTTTTTGGTTCTTCCAGCCGATTGAACAAATATAAAAAAGAGGCATCAACAACAGGAAGACACCAGAGCTCTTTTTTTGGGAAAACAAAAATATCAGGTTTCTAGAAGAATCTAGAATTCAAATTTCCCGCCAAGCCTCTATATCAAAAAGTTGTCCACTAATGAAATATAGGAAATTTAATTTCCTACATGTTTGTAGTTGACACTTTTTTTCTGAAAATCGTTATCTGATGAGATAGAGACGCAGACATTTAGAGAGTCTCGTTGTCTGCACCTACTGAACTTCAAATAGCNNNNNNNNNNNNGCTCAAATCGGTTGCGGCGGCGTAACTTGCTTTAAGCTCTACCTTTTAAGCTCAAATAATGTACAGTGTATAGAACTTTTTAAGGGCTACAAAACAATGTAAAATTCAAATAATTGTGACGAGTTTTCGCTGAGCTACGGGGTTGG</canonical>
            <polymorphic>CTAGAGCTTCATCTTTGTAGTTGACACTTTTTTCTGAAAATTGACACCTAGAGAGATAGAGACGCAGACAGTTAGAGTGTCTCACTGTCTGCGCTTCCTATAGCTATATCTATATCTCGGCTCCTAGGAAGGCTAGAAAAATGGTTTTCAGCGCAGAATGTGTTGAATTCTTCAAATTCTTGTTTTTTATTGAATTTGCAATATTTTGAGCTAAAAACCACTTTTCTAGCTATTCTAGAATTCAAGATATAACTATTTGAAGGCGAGGAGACGCAGGAAGAGAGATAGTCTAACTGTCCGCGTCTCTATCTCTTCACTTATCAATTTTTTTTAAAGTTGTTAATTACAAAAATGTAGAAAATTATATTTCACATATTTTATCAGTTGCCAACATTTTGATATCTTAATTGAGAGCAAAGATAATTGGGGTCAAAGTCATGACTTGTAACAATTACAAAAAAAAATTTTATTTTTGGTTTTTGAGCTCTAAAATAGCAACWAAAAAAAAACAAATATTTTTTGGGGAATACCCCAAAAAAACATTTGGGGTTTTTTGGTTCTTCCAGCCGATTGAACAAATATAAAAAAGAGGCATCAACAACAGGAAGACACCAGAGCTCTTTTTTTGGGAAAACAAAAATATCAGGTTTCTAGAAGAATCTAGAATTCAAATTTCCCGCCAAGCCTCTATATCAAAAAGTTGTCCACTAATGAAATATAGGAAATTTAATTTCCTACATGTTTGTAGTTGACACTTTTTTTCTGAAAATCGTTATCTGATGAGATAGAGACGCAGACATTTAGAGAGTCTCGTTGTCTGCACCTACTGAACTTCAAATAGCNNNNNNNNNNNNGCTCAAATCGGTTGCGGCGGCGTAACTTGCTTTAAGCTCTACCTTTTAAGCTCAAATAATGTACAGTGTATAGAACTTTTTAAGGGCTACAAAACAATGTAAAATTCAAATAATTGTGACGAGTTTTCGCTGAGCTACGGGGTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATTCTTCAAATTCTTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGTTGTTGATGCCTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>440</pcr_amplicon_size>
		<canonical_amplicon>TGAATTCTTCAAATTCTTGTTTTTTATTGAATTTGCAATATTTTGAGCTAAAAACCACTTTTCTAGCTATTCTAGAATTCAAGATATAACTATTTGAAGGCGAGGAGACGCAGGAAGAGAGATAGTCTAACTGTCCGCGTCTCTATCTCTTCACTTATCAATTTTTTTTAAAGTTGTTAATTACAAAAATGTAGAAAATTATATTTCACATATTTTATCAGTTGCCAACATTTTGATATCTTAATTGAGAGCAAAGATAATTGGGGTCAAAGTCATGACTTGTAACAATTACAAAAAAAAATTTTATTTTTGGTTTTTGAGCTCTAAAATAGCAACAAAAAAAAAACAAATATTTTTTGGGGAATACCCCAAAAAAACATTTGGGGTTTTTTGGTTCTTCCAGCCGATTGAACAAATATAAAAAAGAGGCATCAACAACA</canonical_amplicon>
		<polymorphic_amplicon>TGAATTCTTCAAATTCTTGTTTTTTATTGAATTTGCAATATTTTGAGCTAAAAACCACTTTTCTAGCTATTCTAGAATTCAAGATATAACTATTTGAAGGCGAGGAGACGCAGGAAGAGAGATAGTCTAACTGTCCGCGTCTCTATCTCTTCACTTATCAATTTTTTTTAAAGTTGTTAATTACAAAAATGTAGAAAATTATATTTCACATATTTTATCAGTTGCCAACATTTTGATATCTTAATTGAGAGCAAAGATAATTGGGGTCAAAGTCATGACTTGTAACAATTACAAAAAAAAATTTTATTTTTGGTTTTTGAGCTCTAAAATAGCAACWAAAAAAAAACAAATATTTTTTGGGGAATACCCCAAAAAAACATTTGGGGTTTTTTGGTTCTTCCAGCCGATTGAACAAATATAAAAAAGAGGCATCAACAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32726</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>363063</contig_pos>
        <strand></strand>
        <context>ataggaaatt[T/A]aatttcctac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CGCCAAGCCTCTATATCAAAAAGTTGTCCACTAATGAAATATAGGAAATT</left_flank>
        <right_flank>AATTTCCTACATGTTTGTAGTTGACACTTTTTTTCTGAAAATCGTTATCT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTATTCTAGAATTCAAGATATAACTATTTGAAGGCGAGGAGACGCAGGAAGAGAGATAGTCTAACTGTCCGCGTCTCTATCTCTTCACTTATCAATTTTTTTTAAAGTTGTTAATTACAAAAATGTAGAAAATTATATTTCACATATTTTATCAGTTGCCAACATTTTGATATCTTAATTGAGAGCAAAGATAATTGGGGTCAAAGTCATGACTTGTAACAATTACAAAAAAAAATTTTATTTTTGGTTTTTGAGCTCTAAAATAGCAACAAAAAAAAAACAAATATTTTTTGGGGAATACCCCAAAAAAACATTTGGGGTTTTTTGGTTCTTCCAGCCGATTGAACAAATATAAAAAAGAGGCATCAACAACAGGAAGACACCAGAGCTCTTTTTTTGGGAAAACAAAAATATCAGGTTTCTAGAAGAATCTAGAATTCAAATTTCCCGCCAAGCCTCTATATCAAAAAGTTGTCCACTAATGAAATATAGGAAATTTAATTTCCTACATGTTTGTAGTTGACACTTTTTTTCTGAAAATCGTTATCTGATGAGATAGAGACGCAGACATTTAGAGAGTCTCGTTGTCTGCACCTACTGAACTTCAAATAGCNNNNNNNNNNNNGCTCAAATCGGTTGCGGCGGCGTAACTTGCTTTAAGCTCTACCTTTTAAGCTCAAATAATGTACAGTGTATAGAACTTTTTAAGGGCTACAAAACAATGTAAAATTCAAATAATTGTGACGAGTTTTCGCTGAGCTACGGGGTTGGTTCCCTACTGATGCCTAATGAGCTGCGCAGTCATCGTAAACAACTCTAGTGTCTTCTATAGCTTACCAGTTATTTATGTTGTCTTCTTTTTGAAGTCTCTCTATCTCTTCATGTGTTGATTTTCAGAAAAAAGTGTCAATTACAAAAATGAAGCTCCAGTTTTGTTTAGTGTATTCTCTAAAATTTTCACACAAAACCAAATAATATGGAGTACTTTTGTAGGTGTTC</canonical>
            <polymorphic>GCTATTCTAGAATTCAAGATATAACTATTTGAAGGCGAGGAGACGCAGGAAGAGAGATAGTCTAACTGTCCGCGTCTCTATCTCTTCACTTATCAATTTTTTTTAAAGTTGTTAATTACAAAAATGTAGAAAATTATATTTCACATATTTTATCAGTTGCCAACATTTTGATATCTTAATTGAGAGCAAAGATAATTGGGGTCAAAGTCATGACTTGTAACAATTACAAAAAAAAATTTTATTTTTGGTTTTTGAGCTCTAAAATAGCAACAAAAAAAAAACAAATATTTTTTGGGGAATACCCCAAAAAAACATTTGGGGTTTTTTGGTTCTTCCAGCCGATTGAACAAATATAAAAAAGAGGCATCAACAACAGGAAGACACCAGAGCTCTTTTTTTGGGAAAACAAAAATATCAGGTTTCTAGAAGAATCTAGAATTCAAATTTCCCGCCAAGCCTCTATATCAAAAAGTTGTCCACTAATGAAATATAGGAAATTWAATTTCCTACATGTTTGTAGTTGACACTTTTTTTCTGAAAATCGTTATCTGATGAGATAGAGACGCAGACATTTAGAGAGTCTCGTTGTCTGCACCTACTGAACTTCAAATAGCNNNNNNNNNNNNGCTCAAATCGGTTGCGGCGGCGTAACTTGCTTTAAGCTCTACCTTTTAAGCTCAAATAATGTACAGTGTATAGAACTTTTTAAGGGCTACAAAACAATGTAAAATTCAAATAATTGTGACGAGTTTTCGCTGAGCTACGGGGTTGGTTCCCTACTGATGCCTAATGAGCTGCGCAGTCATCGTAAACAACTCTAGTGTCTTCTATAGCTTACCAGTTATTTATGTTGTCTTCTTTTTGAAGTCTCTCTATCTCTTCATGTGTTGATTTTCAGAAAAAAGTGTCAATTACAAAAATGAAGCTCCAGTTTTGTTTAGTGTATTCTCTAAAATTTTCACACAAAACCAAATAATATGGAGTACTTTTGTAGGTGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>233 225 224 202 53 47 10 6</canonical_bands>
                <polymorphic_bands>286 225 224 202 47 10 6</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>323 294 159 103 64 34 14 9</canonical_bands>
                <polymorphic_bands>482 294 103 64 34 14 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAACAGGAAGACACCAGAG</pcr_primer_p1>
		<pcr_primer_p2>AAAGGTAGAGCTTAAAGCAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>ACAACAGGAAGACACCAGAGCTCTTTTTTTGGGAAAACAAAAATATCAGGTTTCTAGAAGAATCTAGAATTCAAATTTCCCGCCAAGCCTCTATATCAAAAAGTTGTCCACTAATGAAATATAGGAAATTTAATTTCCTACATGTTTGTAGTTGACACTTTTTTTCTGAAAATCGTTATCTGATGAGATAGAGACGCAGACATTTAGAGAGTCTCGTTGTCTGCACCTACTGAACTTCAAATAGCNNNNNNNNNNNNGCTCAAATCGGTTGCGGCGGCGTAACTTGCTTTAAGCTCTACCTTT</canonical_amplicon>
		<polymorphic_amplicon>ACAACAGGAAGACACCAGAGCTCTTTTTTTGGGAAAACAAAAATATCAGGTTTCTAGAAGAATCTAGAATTCAAATTTCCCGCCAAGCCTCTATATCAAAAAGTTGTCCACTAATGAAATATAGGAAATTWAATTTCCTACATGTTTGTAGTTGACACTTTTTTTCTGAAAATCGTTATCTGATGAGATAGAGACGCAGACATTTAGAGAGTCTCGTTGTCTGCACCTACTGAACTTCAAATAGCNNNNNNNNNNNNGCTCAAATCGGTTGCGGCGGCGTAACTTGCTTTAAGCTCTACCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32727</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>391007</contig_pos>
        <strand>+</strand>
        <context>TGTACTTTCA[A/G]TTTTCCATTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTCTCCGCGGGAAGGCCCTGTTGTTGTTTCGCCGCCAAATGTACTTTCA</left_flank>
        <right_flank>TTTTCCATTGAAGGGTCTAACATGGGTTTTTCGGGTTTTTCCTATTTTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCTGTGATGTTGATGAAAATGACCTAGAGCTTCAAATTTTAGCTGAAAACATTCAAGAACTTCCTTCTAGAGGTTCCCAAAGGCCGATCCACATCCCTTAAAATCAAATTTACAGGATAATTCAGGCAAGATTAGTTCAAAAGAAGAATATAAACACAAAATTTAACATAATCAAAATCTTTATTCATTATGTCAAGTATGAAGTATGGATTCTATCAATCATGTGTGGCCGTGTAGTCCCATTGGACAGGATCAGAGAGCAGCCAGAACGACAAATGAGGCACCTGGAAATTTAAAATTTAGGGTTACGGTACTAGAATTTCCTGGAAACGTCTCGCCAAAAATAAGACTAAAATATGATGAAAGTTTTCGAGATCAATTTACAAGAACCGTACAAATTCCATATCTCATAAAAGTGGCTGAACCTTCGACGGGGGTTGTTCGGAAGTCTCCGCGGGAAGGCCCTGTTGTTGTTTCGCCGCCAAATGTACTTTCAGTTTTCCATTGAAGGGTCTAACATGGGTTTTTCGGGTTTTTCCTATTTTGGTTCTACTTTTGGTTCTGGTTCTGGCTCTGGTTCATAATCTTCTCCAAAAGCCACAGCGATCAATGCAAGAGCCAAAAAGAGCCAATCGTTTTGTGGAACATTTCTAGTCTGACTAGGGAAGGCCCCAACTCGGGTGTGGCGATACGGGTGGTGACCTATATCATCTGAAAGCTGACATGTTCTTGATTCCAAATCTTTTTTAAAAAATGTCCTCTCCCCTCTCCTCTCCCTGTTTTCCTCCCCTCTTCTACGCCCTCCCCACTCCCTCTCCTGCCGCTCCCATGTGGTCTAGTGGTTAGGATTCGTGGTTTTCACCCACGCGGCCCGGGTTCGATTCCCGGCATGGGAAGTTTCTTTTTTTTTCTTTTTTGAACTATATGATAAAATCAGATAAAGATCTGGAGCAAAGATAACAGTGTGTAAATCTAAGGATGGGTTTCAAAAGGAAGT</canonical>
            <polymorphic>ATTTCTGTGATGTTGATGAAAATGACCTAGAGCTTCAAATTTTAGCTGAAAACATTCAAGAACTTCCTTCTAGAGGTTCCCAAAGGCCGATCCACATCCCTTAAAATCAAATTTACAGGATAATTCAGGCAAGATTAGTTCAAAAGAAGAATATAAACACAAAATTTAACATAATCAAAATCTTTATTCATTATGTCAAGTATGAAGTATGGATTCTATCAATCATGTGTGGCCGTGTAGTCCCATTGGACAGGATCAGAGAGCAGCCAGAACGACAAATGAGGCACCTGGAAATTTAAAATTTAGGGTTACGGTACTAGAATTTCCTGGAAACGTCTCGCCAAAAATAAGACTAAAATATGATGAAAGTTTTCGAGATCAATTTACAAGAACCGTACAAATTCCATATCTCATAAAAGTGGCTGAACCTTCGACGGGGGTTGTTCGGAAGTCTCCGCGGGAAGGCCCTGTTGTTGTTTCGCCGCCAAATGTACTTTCARTTTTCCATTGAAGGGTCTAACATGGGTTTTTCGGGTTTTTCCTATTTTGGTTCTACTTTTGGTTCTGGTTCTGGCTCTGGTTCATAATCTTCTCCAAAAGCCACAGCGATCAATGCAAGAGCCAAAAAGAGCCAATCGTTTTGTGGAACATTTCTAGTCTGACTAGGGAAGGCCCCAACTCGGGTGTGGCGATACGGGTGGTGACCTATATCATCTGAAAGCTGACATGTTCTTGATTCCAAATCTTTTTTAAAAAATGTCCTCTCCCCTCTCCTCTCCCTGTTTTCCTCCCCTCTTCTACGCCCTCCCCACTCCCTCTCCTGCCGCTCCCATGTGGTCTAGTGGTTAGGATTCGTGGTTTTCACCCACGCGGCCCGGGTTCGATTCCCGGCATGGGAAGTTTCTTTTTTTTTCTTTTTTGAACTATATGATAAAATCAGATAAAGATCTGGAGCAAAGATAACAGTGTGTAAATCTAAGGATGGGTTTCAAAAGGAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGCCAAAAATAAGACTAAAATA</pcr_primer_p1>
		<pcr_primer_p2>TTATGAACCAGAGCCAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCGCCAAAAATAAGACTAAAATATGATGAAAGTTTTCGAGATCAATTTACAAGAACCGTACAAATTCCATATCTCATAAAAGTGGCTGAACCTTCGACGGGGGTTGTTCGGAAGTCTCCGCGGGAAGGCCCTGTTGTTGTTTCGCCGCCAAATGTACTTTCAGTTTTCCATTGAAGGGTCTAACATGGGTTTTTCGGGTTTTTCCTATTTTGGTTCTACTTTTGGTTCTGGTTCTGGCTCTGGTTCATAA</canonical_amplicon>
		<polymorphic_amplicon>TCGCCAAAAATAAGACTAAAATATGATGAAAGTTTTCGAGATCAATTTACAAGAACCGTACAAATTCCATATCTCATAAAAGTGGCTGAACCTTCGACGGGGGTTGTTCGGAAGTCTCCGCGGGAAGGCCCTGTTGTTGTTTCGCCGCCAAATGTACTTTCARTTTTCCATTGAAGGGTCTAACATGGGTTTTTCGGGTTTTTCCTATTTTGGTTCTACTTTTGGTTCTGGTTCTGGCTCTGGTTCATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32728</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>415582</contig_pos>
        <strand></strand>
        <context>cttatttctt[A/G]cccaattttg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCGCTCCACTGCGAATTTCAAGAAATTAGCTGTAACTCGCTTATTTCTT</left_flank>
        <right_flank>CCCAATTTTGACGAAAGTTAGATTTTTGAATTTCCCGCGTTTTGGGCTTT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTAAAATTGATTTTCAGATTTTCAAAGAAAAACATTTTTTAAAGTGATTTTCAAACCATTTTTCCAGCTGCTCCTGTAAACAAGAAGCAGAAGATTCAAGATCCGGAAGACTCTGAAGATGATCAATCAGATCTAGAAGCACCACAAGAAGTACAGAATTCAGAAGACGTGGAAATCTCAGAAGCCGACGATGAGCAGGATTCTGAAGATGACGATTTTGGTGCATTTGAGGAGCAACAAGGTAATAATGGTAATTTTTTTGAAATTTGAAATTTTTCAAAAATCAAGCTTTTTCAGATTTCATGGATGATTTTGATGTACCGTTAGTACCAACACAAGCGAATGGGAATCATCAGGGAATTTATTGGGGAGATGATTCAGATGACGATCAGGGTAAGATTTTTTTATGGAATTTTTTGAACTTTTTAAATTTCCCGCCTAGCTTAAACGCGCTCCACTGCGAATTTCAAGAAATTAGCTGTAACTCGCTTATTTCTTACCCAATTTTGACGAAAGTTAGATTTTTGAATTTCCCGCGTTTTGGGCTTTAAAATGCATATAACCATGAACCATTTCTCTCAAACTTGAAAATTGGATCAAGTTTTGGCTGGTACGCTCTACTGCGAATTTCTAAAAAATTGGGCATAACTTGCTCAGTTTTTGTCCAGTTTTAACGAAATTTAGATTTTTGAATTTTCAGCGTTTTGGGCTTCAAAATAAATATAATCATGACCTATTTCTTTTCACTTTTGAAATTGAGCTACGCGGAGCTCAGCTGGCGCCTTTAATAAAAAAAATTTAGACAAAAAGGTCTCTTTATTTTTCAGTCCCTCCTGCTAACAATAGTCAGAAGATTCGAAAACCAAGATATTTGGAATCATCAGATAGTTCTGAAAGTTACAGCGACGATGAAGAGCCGATTCCAAAAATTCCGCTGTTTGTTATTTCGGATTCTGAAGAGGATGAAGGTGAGTTTCAAAATTTCTCAAATTTGAAAAA</canonical>
            <polymorphic>GTTAAAATTGATTTTCAGATTTTCAAAGAAAAACATTTTTTAAAGTGATTTTCAAACCATTTTTCCAGCTGCTCCTGTAAACAAGAAGCAGAAGATTCAAGATCCGGAAGACTCTGAAGATGATCAATCAGATCTAGAAGCACCACAAGAAGTACAGAATTCAGAAGACGTGGAAATCTCAGAAGCCGACGATGAGCAGGATTCTGAAGATGACGATTTTGGTGCATTTGAGGAGCAACAAGGTAATAATGGTAATTTTTTTGAAATTTGAAATTTTTCAAAAATCAAGCTTTTTCAGATTTCATGGATGATTTTGATGTACCGTTAGTACCAACACAAGCGAATGGGAATCATCAGGGAATTTATTGGGGAGATGATTCAGATGACGATCAGGGTAAGATTTTTTTATGGAATTTTTTGAACTTTTTAAATTTCCCGCCTAGCTTAAACGCGCTCCACTGCGAATTTCAAGAAATTAGCTGTAACTCGCTTATTTCTTRCCCAATTTTGACGAAAGTTAGATTTTTGAATTTCCCGCGTTTTGGGCTTTAAAATGCATATAACCATGAACCATTTCTCTCAAACTTGAAAATTGGATCAAGTTTTGGCTGGTACGCTCTACTGCGAATTTCTAAAAAATTGGGCATAACTTGCTCAGTTTTTGTCCAGTTTTAACGAAATTTAGATTTTTGAATTTTCAGCGTTTTGGGCTTCAAAATAAATATAATCATGACCTATTTCTTTTCACTTTTGAAATTGAGCTACGCGGAGCTCAGCTGGCGCCTTTAATAAAAAAAATTTAGACAAAAAGGTCTCTTTATTTTTCAGTCCCTCCTGCTAACAATAGTCAGAAGATTCGAAAACCAAGATATTTGGAATCATCAGATAGTTCTGAAAGTTACAGCGACGATGAAGAGCCGATTCCAAAAATTCCGCTGTTTGTTATTTCGGATTCTGAAGAGGATGAAGGTGAGTTTCAAAATTTCTCAAATTTGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACGATCAGGGTAAGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAAATAAAGAGACCTTTTTGTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>440</pcr_amplicon_size>
		<canonical_amplicon>GACGATCAGGGTAAGATTTTTTTATGGAATTTTTTGAACTTTTTAAATTTCCCGCCTAGCTTAAACGCGCTCCACTGCGAATTTCAAGAAATTAGCTGTAACTCGCTTATTTCTTACCCAATTTTGACGAAAGTTAGATTTTTGAATTTCCCGCGTTTTGGGCTTTAAAATGCATATAACCATGAACCATTTCTCTCAAACTTGAAAATTGGATCAAGTTTTGGCTGGTACGCTCTACTGCGAATTTCTAAAAAATTGGGCATAACTTGCTCAGTTTTTGTCCAGTTTTAACGAAATTTAGATTTTTGAATTTTCAGCGTTTTGGGCTTCAAAATAAATATAATCATGACCTATTTCTTTTCACTTTTGAAATTGAGCTACGCGGAGCTCAGCTGGCGCCTTTAATAAAAAAAATTTAGACAAAAAGGTCTCTTTATTTT</canonical_amplicon>
		<polymorphic_amplicon>GACGATCAGGGTAAGATTTTTTTATGGAATTTTTTGAACTTTTTAAATTTCCCGCCTAGCTTAAACGCGCTCCACTGCGAATTTCAAGAAATTAGCTGTAACTCGCTTATTTCTTRCCCAATTTTGACGAAAGTTAGATTTTTGAATTTCCCGCGTTTTGGGCTTTAAAATGCATATAACCATGAACCATTTCTCTCAAACTTGAAAATTGGATCAAGTTTTGGCTGGTACGCTCTACTGCGAATTTCTAAAAAATTGGGCATAACTTGCTCAGTTTTTGTCCAGTTTTAACGAAATTTAGATTTTTGAATTTTCAGCGTTTTGGGCTTCAAAATAAATATAATCATGACCTATTTCTTTTCACTTTTGAAATTGAGCTACGCGGAGCTCAGCTGGCGCCTTTAATAAAAAAAATTTAGACAAAAAGGTCTCTTTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32729</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>415684</contig_pos>
        <strand>+</strand>
        <context>attgGATCAA[A/G]TTTTGGCTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATGCATATAACCATGAACCATTTCTCTCAAACTTGAAAATTGGATCAA</left_flank>
        <right_flank>TTTTGGCTGGTACGCTCTACTGCGAATTTCTAAAAAATTGGGCATAACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCGGAAGACTCTGAAGATGATCAATCAGATCTAGAAGCACCACAAGAAGTACAGAATTCAGAAGACGTGGAAATCTCAGAAGCCGACGATGAGCAGGATTCTGAAGATGACGATTTTGGTGCATTTGAGGAGCAACAAGGTAATAATGGTAATTTTTTTGAAATTTGAAATTTTTCAAAAATCAAGCTTTTTCAGATTTCATGGATGATTTTGATGTACCGTTAGTACCAACACAAGCGAATGGGAATCATCAGGGAATTTATTGGGGAGATGATTCAGATGACGATCAGGGTAAGATTTTTTTATGGAATTTTTTGAACTTTTTAAATTTCCCGCCTAGCTTAAACGCGCTCCACTGCGAATTTCAAGAAATTAGCTGTAACTCGCTTATTTCTTACCCAATTTTGACGAAAGTTAGATTTTTGAATTTCCCGCGTTTTGGGCTTTAAAATGCATATAACCATGAACCATTTCTCTCAAACTTGAAAATTGGATCAAGTTTTGGCTGGTACGCTCTACTGCGAATTTCTAAAAAATTGGGCATAACTTGCTCAGTTTTTGTCCAGTTTTAACGAAATTTAGATTTTTGAATTTTCAGCGTTTTGGGCTTCAAAATAAATATAATCATGACCTATTTCTTTTCACTTTTGAAATTGAGCTACGCGGAGCTCAGCTGGCGCCTTTAATAAAAAAAATTTAGACAAAAAGGTCTCTTTATTTTTCAGTCCCTCCTGCTAACAATAGTCAGAAGATTCGAAAACCAAGATATTTGGAATCATCAGATAGTTCTGAAAGTTACAGCGACGATGAAGAGCCGATTCCAAAAATTCCGCTGTTTGTTATTTCGGATTCTGAAGAGGATGAAGGTGAGTTTCAAAATTTCTCAAATTTGAAAAAAAATTGGAATATCTAACTAAAGGAAATTAGCTGTAACTCGCTTATTTTTCGTCCATTTTTAACGAAAGTTACATTTTTGAATTTCCCGCGTTCTGGGCTTTG</canonical>
            <polymorphic>TCCGGAAGACTCTGAAGATGATCAATCAGATCTAGAAGCACCACAAGAAGTACAGAATTCAGAAGACGTGGAAATCTCAGAAGCCGACGATGAGCAGGATTCTGAAGATGACGATTTTGGTGCATTTGAGGAGCAACAAGGTAATAATGGTAATTTTTTTGAAATTTGAAATTTTTCAAAAATCAAGCTTTTTCAGATTTCATGGATGATTTTGATGTACCGTTAGTACCAACACAAGCGAATGGGAATCATCAGGGAATTTATTGGGGAGATGATTCAGATGACGATCAGGGTAAGATTTTTTTATGGAATTTTTTGAACTTTTTAAATTTCCCGCCTAGCTTAAACGCGCTCCACTGCGAATTTCAAGAAATTAGCTGTAACTCGCTTATTTCTTACCCAATTTTGACGAAAGTTAGATTTTTGAATTTCCCGCGTTTTGGGCTTTAAAATGCATATAACCATGAACCATTTCTCTCAAACTTGAAAATTGGATCAARTTTTGGCTGGTACGCTCTACTGCGAATTTCTAAAAAATTGGGCATAACTTGCTCAGTTTTTGTCCAGTTTTAACGAAATTTAGATTTTTGAATTTTCAGCGTTTTGGGCTTCAAAATAAATATAATCATGACCTATTTCTTTTCACTTTTGAAATTGAGCTACGCGGAGCTCAGCTGGCGCCTTTAATAAAAAAAATTTAGACAAAAAGGTCTCTTTATTTTTCAGTCCCTCCTGCTAACAATAGTCAGAAGATTCGAAAACCAAGATATTTGGAATCATCAGATAGTTCTGAAAGTTACAGCGACGATGAAGAGCCGATTCCAAAAATTCCGCTGTTTGTTATTTCGGATTCTGAAGAGGATGAAGGTGAGTTTCAAAATTTCTCAAATTTGAAAAAAAATTGGAATATCTAACTAAAGGAAATTAGCTGTAACTCGCTTATTTTTCGTCCATTTTTAACGAAAGTTACATTTTTGAATTTCCCGCGTTCTGGGCTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACGATCAGGGTAAGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAAATAAAGAGACCTTTTTGTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>440</pcr_amplicon_size>
		<canonical_amplicon>GACGATCAGGGTAAGATTTTTTTATGGAATTTTTTGAACTTTTTAAATTTCCCGCCTAGCTTAAACGCGCTCCACTGCGAATTTCAAGAAATTAGCTGTAACTCGCTTATTTCTTACCCAATTTTGACGAAAGTTAGATTTTTGAATTTCCCGCGTTTTGGGCTTTAAAATGCATATAACCATGAACCATTTCTCTCAAACTTGAAAATTGGATCAAGTTTTGGCTGGTACGCTCTACTGCGAATTTCTAAAAAATTGGGCATAACTTGCTCAGTTTTTGTCCAGTTTTAACGAAATTTAGATTTTTGAATTTTCAGCGTTTTGGGCTTCAAAATAAATATAATCATGACCTATTTCTTTTCACTTTTGAAATTGAGCTACGCGGAGCTCAGCTGGCGCCTTTAATAAAAAAAATTTAGACAAAAAGGTCTCTTTATTTT</canonical_amplicon>
		<polymorphic_amplicon>GACGATCAGGGTAAGATTTTTTTATGGAATTTTTTGAACTTTTTAAATTTCCCGCCTAGCTTAAACGCGCTCCACTGCGAATTTCAAGAAATTAGCTGTAACTCGCTTATTTCTTACCCAATTTTGACGAAAGTTAGATTTTTGAATTTCCCGCGTTTTGGGCTTTAAAATGCATATAACCATGAACCATTTCTCTCAAACTTGAAAATTGGATCAARTTTTGGCTGGTACGCTCTACTGCGAATTTCTAAAAAATTGGGCATAACTTGCTCAGTTTTTGTCCAGTTTTAACGAAATTTAGATTTTTGAATTTTCAGCGTTTTGGGCTTCAAAATAAATATAATCATGACCTATTTCTTTTCACTTTTGAAATTGAGCTACGCGGAGCTCAGCTGGCGCCTTTAATAAAAAAAATTTAGACAAAAAGGTCTCTTTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32730</snp_id>
        <super_contig>c007600939.Contig1</super_contig>
        <contig_pos>415804</contig_pos>
        <strand></strand>
        <context>ttcaaaataa[A/G]tataatcatg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAACGAAATTTAGATTTTTGAATTTTCAGCGTTTTGGGCTTCAAAATAA</left_flank>
        <right_flank>TATAATCATGACCTATTTCTTTTCACTTTTGAAATTGAGCTACGCGGAGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCATTTGAGGAGCAACAAGGTAATAATGGTAATTTTTTTGAAATTTGAAATTTTTCAAAAATCAAGCTTTTTCAGATTTCATGGATGATTTTGATGTACCGTTAGTACCAACACAAGCGAATGGGAATCATCAGGGAATTTATTGGGGAGATGATTCAGATGACGATCAGGGTAAGATTTTTTTATGGAATTTTTTGAACTTTTTAAATTTCCCGCCTAGCTTAAACGCGCTCCACTGCGAATTTCAAGAAATTAGCTGTAACTCGCTTATTTCTTACCCAATTTTGACGAAAGTTAGATTTTTGAATTTCCCGCGTTTTGGGCTTTAAAATGCATATAACCATGAACCATTTCTCTCAAACTTGAAAATTGGATCAAGTTTTGGCTGGTACGCTCTACTGCGAATTTCTAAAAAATTGGGCATAACTTGCTCAGTTTTTGTCCAGTTTTAACGAAATTTAGATTTTTGAATTTTCAGCGTTTTGGGCTTCAAAATAAATATAATCATGACCTATTTCTTTTCACTTTTGAAATTGAGCTACGCGGAGCTCAGCTGGCGCCTTTAATAAAAAAAATTTAGACAAAAAGGTCTCTTTATTTTTCAGTCCCTCCTGCTAACAATAGTCAGAAGATTCGAAAACCAAGATATTTGGAATCATCAGATAGTTCTGAAAGTTACAGCGACGATGAAGAGCCGATTCCAAAAATTCCGCTGTTTGTTATTTCGGATTCTGAAGAGGATGAAGGTGAGTTTCAAAATTTCTCAAATTTGAAAAAAAATTGGAATATCTAACTAAAGGAAATTAGCTGTAACTCGCTTATTTTTCGTCCATTTTTAACGAAAGTTACATTTTTGAATTTCCCGCGTTCTGGGCTTTGAAATGAGTATAAACATGACCCAGCTTCTTAAAAGGTTTAAAAAAGGAGCTAATCGATCGTTCGGTAAGTTCGCTCCACTGCAAGTCTCAGGAAAATGGATGTAACTCTCTTAGTTTCTGT</canonical>
            <polymorphic>TGCATTTGAGGAGCAACAAGGTAATAATGGTAATTTTTTTGAAATTTGAAATTTTTCAAAAATCAAGCTTTTTCAGATTTCATGGATGATTTTGATGTACCGTTAGTACCAACACAAGCGAATGGGAATCATCAGGGAATTTATTGGGGAGATGATTCAGATGACGATCAGGGTAAGATTTTTTTATGGAATTTTTTGAACTTTTTAAATTTCCCGCCTAGCTTAAACGCGCTCCACTGCGAATTTCAAGAAATTAGCTGTAACTCGCTTATTTCTTACCCAATTTTGACGAAAGTTAGATTTTTGAATTTCCCGCGTTTTGGGCTTTAAAATGCATATAACCATGAACCATTTCTCTCAAACTTGAAAATTGGATCAAGTTTTGGCTGGTACGCTCTACTGCGAATTTCTAAAAAATTGGGCATAACTTGCTCAGTTTTTGTCCAGTTTTAACGAAATTTAGATTTTTGAATTTTCAGCGTTTTGGGCTTCAAAATAARTATAATCATGACCTATTTCTTTTCACTTTTGAAATTGAGCTACGCGGAGCTCAGCTGGCGCCTTTAATAAAAAAAATTTAGACAAAAAGGTCTCTTTATTTTTCAGTCCCTCCTGCTAACAATAGTCAGAAGATTCGAAAACCAAGATATTTGGAATCATCAGATAGTTCTGAAAGTTACAGCGACGATGAAGAGCCGATTCCAAAAATTCCGCTGTTTGTTATTTCGGATTCTGAAGAGGATGAAGGTGAGTTTCAAAATTTCTCAAATTTGAAAAAAAATTGGAATATCTAACTAAAGGAAATTAGCTGTAACTCGCTTATTTTTCGTCCATTTTTAACGAAAGTTACATTTTTGAATTTCCCGCGTTCTGGGCTTTGAAATGAGTATAAACATGACCCAGCTTCTTAAAAGGTTTAAAAAAGGAGCTAATCGATCGTTCGGTAAGTTCGCTCCACTGCAAGTCTCAGGAAAATGGATGTAACTCTCTTAGTTTCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACGATCAGGGTAAGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAAATAAAGAGACCTTTTTGTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>440</pcr_amplicon_size>
		<canonical_amplicon>GACGATCAGGGTAAGATTTTTTTATGGAATTTTTTGAACTTTTTAAATTTCCCGCCTAGCTTAAACGCGCTCCACTGCGAATTTCAAGAAATTAGCTGTAACTCGCTTATTTCTTACCCAATTTTGACGAAAGTTAGATTTTTGAATTTCCCGCGTTTTGGGCTTTAAAATGCATATAACCATGAACCATTTCTCTCAAACTTGAAAATTGGATCAAGTTTTGGCTGGTACGCTCTACTGCGAATTTCTAAAAAATTGGGCATAACTTGCTCAGTTTTTGTCCAGTTTTAACGAAATTTAGATTTTTGAATTTTCAGCGTTTTGGGCTTCAAAATAAATATAATCATGACCTATTTCTTTTCACTTTTGAAATTGAGCTACGCGGAGCTCAGCTGGCGCCTTTAATAAAAAAAATTTAGACAAAAAGGTCTCTTTATTTT</canonical_amplicon>
		<polymorphic_amplicon>GACGATCAGGGTAAGATTTTTTTATGGAATTTTTTGAACTTTTTAAATTTCCCGCCTAGCTTAAACGCGCTCCACTGCGAATTTCAAGAAATTAGCTGTAACTCGCTTATTTCTTACCCAATTTTGACGAAAGTTAGATTTTTGAATTTCCCGCGTTTTGGGCTTTAAAATGCATATAACCATGAACCATTTCTCTCAAACTTGAAAATTGGATCAAGTTTTGGCTGGTACGCTCTACTGCGAATTTCTAAAAAATTGGGCATAACTTGCTCAGTTTTTGTCCAGTTTTAACGAAATTTAGATTTTTGAATTTTCAGCGTTTTGGGCTTCAAAATAARTATAATCATGACCTATTTCTTTTCACTTTTGAAATTGAGCTACGCGGAGCTCAGCTGGCGCCTTTAATAAAAAAAATTTAGACAAAAAGGTCTCTTTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32731</snp_id>
        <super_contig>c007700538.Contig6</super_contig>
        <contig_pos>63734</contig_pos>
        <strand></strand>
        <context>aatttcattt[T/A]tcggaccccc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTT</left_flank>
        <right_flank>TCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAAT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTAAAAAATTGAAAAATTGAGAAAAAAAATCATTTTGAGCCAAAATTTACCTATATCAAACTAGCGAAATGTAATTGAAATTGCTATTTACAGATGTCAAATTTCATTTCCAATCGATTGAGACAAAAATCAAGACTCTATCTTAAAAACTAAGCAAGTTATCGCCATTTTTCTGAAATATACTCATTTTATCCTCAAAATAGAGCACCTAGAAAAACGCTTGTAACTCGGCCCATTTTTGCCCAATTTCAGAAATTTTGATAGTTTAGAATTAGCGTGAAGAGGGCTTCAAAATAATTGTAAATTCGCTAAAATCCCAAAATTTTTAACTTTATGAAATTTCGATTTTTTTTCGGATTCTCTATTGTCCCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGC</canonical>
            <polymorphic>AGGTAAAAAATTGAAAAATTGAGAAAAAAAATCATTTTGAGCCAAAATTTACCTATATCAAACTAGCGAAATGTAATTGAAATTGCTATTTACAGATGTCAAATTTCATTTCCAATCGATTGAGACAAAAATCAAGACTCTATCTTAAAAACTAAGCAAGTTATCGCCATTTTTCTGAAATATACTCATTTTATCCTCAAAATAGAGCACCTAGAAAAACGCTTGTAACTCGGCCCATTTTTGCCCAATTTCAGAAATTTTGATAGTTTAGAATTAGCGTGAAGAGGGCTTCAAAATAATTGTAAATTCGCTAAAATCCCAAAATTTTTAACTTTATGAAATTTCGATTTTTTTTCGGATTCTCTATTGTCCCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTWTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCACTAGTAACTCGGTCAAT</pcr_primer_p1>
		<pcr_primer_p2>ATGTTGAAGCCTAGCAGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>628</pcr_amplicon_size>
		<canonical_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTT</canonical_amplicon>
		<polymorphic_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTWTCGGACCCCCAAATGCGCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32732</snp_id>
        <super_contig>c007700538.Contig6</super_contig>
        <contig_pos>63772</contig_pos>
        <strand></strand>
        <context>caaaaagtgt[C/A]aaaattcaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGT</left_flank>
        <right_flank>AAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCCAAAATTTACCTATATCAAACTAGCGAAATGTAATTGAAATTGCTATTTACAGATGTCAAATTTCATTTCCAATCGATTGAGACAAAAATCAAGACTCTATCTTAAAAACTAAGCAAGTTATCGCCATTTTTCTGAAATATACTCATTTTATCCTCAAAATAGAGCACCTAGAAAAACGCTTGTAACTCGGCCCATTTTTGCCCAATTTCAGAAATTTTGATAGTTTAGAATTAGCGTGAAGAGGGCTTCAAAATAATTGTAAATTCGCTAAAATCCCAAAATTTTTAACTTTATGAAATTTCGATTTTTTTTCGGATTCTCTATTGTCCCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTA</canonical>
            <polymorphic>GAGCCAAAATTTACCTATATCAAACTAGCGAAATGTAATTGAAATTGCTATTTACAGATGTCAAATTTCATTTCCAATCGATTGAGACAAAAATCAAGACTCTATCTTAAAAACTAAGCAAGTTATCGCCATTTTTCTGAAATATACTCATTTTATCCTCAAAATAGAGCACCTAGAAAAACGCTTGTAACTCGGCCCATTTTTGCCCAATTTCAGAAATTTTGATAGTTTAGAATTAGCGTGAAGAGGGCTTCAAAATAATTGTAAATTCGCTAAAATCCCAAAATTTTTAACTTTATGAAATTTCGATTTTTTTTCGGATTCTCTATTGTCCCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTMAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCACTAGTAACTCGGTCAAT</pcr_primer_p1>
		<pcr_primer_p2>ATGTTGAAGCCTAGCAGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>628</pcr_amplicon_size>
		<canonical_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</canonical_amplicon>
		<polymorphic_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTMAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32733</snp_id>
        <super_contig>c007700538.Contig6</super_contig>
        <contig_pos>63789</contig_pos>
        <strand></strand>
        <context>caaaatgggc[G/A]gagcctagtc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGC</left_flank>
        <right_flank>GAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCAAACTAGCGAAATGTAATTGAAATTGCTATTTACAGATGTCAAATTTCATTTCCAATCGATTGAGACAAAAATCAAGACTCTATCTTAAAAACTAAGCAAGTTATCGCCATTTTTCTGAAATATACTCATTTTATCCTCAAAATAGAGCACCTAGAAAAACGCTTGTAACTCGGCCCATTTTTGCCCAATTTCAGAAATTTTGATAGTTTAGAATTAGCGTGAAGAGGGCTTCAAAATAATTGTAAATTCGCTAAAATCCCAAAATTTTTAACTTTATGAAATTTCGATTTTTTTTCGGATTCTCTATTGTCCCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACC</canonical>
            <polymorphic>TATCAAACTAGCGAAATGTAATTGAAATTGCTATTTACAGATGTCAAATTTCATTTCCAATCGATTGAGACAAAAATCAAGACTCTATCTTAAAAACTAAGCAAGTTATCGCCATTTTTCTGAAATATACTCATTTTATCCTCAAAATAGAGCACCTAGAAAAACGCTTGTAACTCGGCCCATTTTTGCCCAATTTCAGAAATTTTGATAGTTTAGAATTAGCGTGAAGAGGGCTTCAAAATAATTGTAAATTCGCTAAAATCCCAAAATTTTTAACTTTATGAAATTTCGATTTTTTTTCGGATTCTCTATTGTCCCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCRGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>497 299 204</canonical_bands>
                <polymorphic_bands>796 204</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>450 299 199 52</canonical_bands>
                <polymorphic_bands>450 351 199</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCACTAGTAACTCGGTCAAT</pcr_primer_p1>
		<pcr_primer_p2>ATGTTGAAGCCTAGCAGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>628</pcr_amplicon_size>
		<canonical_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</canonical_amplicon>
		<polymorphic_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCRGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32734</snp_id>
        <super_contig>c007700538.Contig6</super_contig>
        <contig_pos>63803</contig_pos>
        <strand></strand>
        <context>cctagtcgtg[T/C]ttaggctcat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTG</left_flank>
        <right_flank>TTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGTAATTGAAATTGCTATTTACAGATGTCAAATTTCATTTCCAATCGATTGAGACAAAAATCAAGACTCTATCTTAAAAACTAAGCAAGTTATCGCCATTTTTCTGAAATATACTCATTTTATCCTCAAAATAGAGCACCTAGAAAAACGCTTGTAACTCGGCCCATTTTTGCCCAATTTCAGAAATTTTGATAGTTTAGAATTAGCGTGAAGAGGGCTTCAAAATAATTGTAAATTCGCTAAAATCCCAAAATTTTTAACTTTATGAAATTTCGATTTTTTTTCGGATTCTCTATTGTCCCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAA</canonical>
            <polymorphic>AATGTAATTGAAATTGCTATTTACAGATGTCAAATTTCATTTCCAATCGATTGAGACAAAAATCAAGACTCTATCTTAAAAACTAAGCAAGTTATCGCCATTTTTCTGAAATATACTCATTTTATCCTCAAAATAGAGCACCTAGAAAAACGCTTGTAACTCGGCCCATTTTTGCCCAATTTCAGAAATTTTGATAGTTTAGAATTAGCGTGAAGAGGGCTTCAAAATAATTGTAAATTCGCTAAAATCCCAAAATTTTTAACTTTATGAAATTTCGATTTTTTTTCGGATTCTCTATTGTCCCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGYTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCACTAGTAACTCGGTCAAT</pcr_primer_p1>
		<pcr_primer_p2>ATGTTGAAGCCTAGCAGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>628</pcr_amplicon_size>
		<canonical_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</canonical_amplicon>
		<polymorphic_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGYTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32735</snp_id>
        <super_contig>c007700538.Contig6</super_contig>
        <contig_pos>63834</contig_pos>
        <strand></strand>
        <context>tcaacaagac[G/A]agtacagttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGAC</left_flank>
        <right_flank>AGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAAT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTCATTTCCAATCGATTGAGACAAAAATCAAGACTCTATCTTAAAAACTAAGCAAGTTATCGCCATTTTTCTGAAATATACTCATTTTATCCTCAAAATAGAGCACCTAGAAAAACGCTTGTAACTCGGCCCATTTTTGCCCAATTTCAGAAATTTTGATAGTTTAGAATTAGCGTGAAGAGGGCTTCAAAATAATTGTAAATTCGCTAAAATCCCAAAATTTTTAACTTTATGAAATTTCGATTTTTTTTCGGATTCTCTATTGTCCCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAACTGGTTCCTCCACCTGATGGGTGCAAATCCA</canonical>
            <polymorphic>AAATTTCATTTCCAATCGATTGAGACAAAAATCAAGACTCTATCTTAAAAACTAAGCAAGTTATCGCCATTTTTCTGAAATATACTCATTTTATCCTCAAAATAGAGCACCTAGAAAAACGCTTGTAACTCGGCCCATTTTTGCCCAATTTCAGAAATTTTGATAGTTTAGAATTAGCGTGAAGAGGGCTTCAAAATAATTGTAAATTCGCTAAAATCCCAAAATTTTTAACTTTATGAAATTTCGATTTTTTTTCGGATTCTCTATTGTCCCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACRAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAACTGGTTCCTCCACCTGATGGGTGCAAATCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCACTAGTAACTCGGTCAAT</pcr_primer_p1>
		<pcr_primer_p2>ATGTTGAAGCCTAGCAGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>628</pcr_amplicon_size>
		<canonical_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</canonical_amplicon>
		<polymorphic_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACRAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32736</snp_id>
        <super_contig>c007700538.Contig6</super_contig>
        <contig_pos>63846</contig_pos>
        <strand></strand>
        <context>gtacagttta[G/A]ttgsgaaayt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTA</left_flank>
        <right_flank>TTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATCGATTGAGACAAAAATCAAGACTCTATCTTAAAAACTAAGCAAGTTATCGCCATTTTTCTGAAATATACTCATTTTATCCTCAAAATAGAGCACCTAGAAAAACGCTTGTAACTCGGCCCATTTTTGCCCAATTTCAGAAATTTTGATAGTTTAGAATTAGCGTGAAGAGGGCTTCAAAATAATTGTAAATTCGCTAAAATCCCAAAATTTTTAACTTTATGAAATTTCGATTTTTTTTCGGATTCTCTATTGTCCCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAACTGGTTCCTCCACCTGATGGGTGCAAATCCAGAGATCCAATCA</canonical>
            <polymorphic>CAATCGATTGAGACAAAAATCAAGACTCTATCTTAAAAACTAAGCAAGTTATCGCCATTTTTCTGAAATATACTCATTTTATCCTCAAAATAGAGCACCTAGAAAAACGCTTGTAACTCGGCCCATTTTTGCCCAATTTCAGAAATTTTGATAGTTTAGAATTAGCGTGAAGAGGGCTTCAAAATAATTGTAAATTCGCTAAAATCCCAAAATTTTTAACTTTATGAAATTTCGATTTTTTTTCGGATTCTCTATTGTCCCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTARTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAACTGGTTCCTCCACCTGATGGGTGCAAATCCAGAGATCCAATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCACTAGTAACTCGGTCAAT</pcr_primer_p1>
		<pcr_primer_p2>ATGTTGAAGCCTAGCAGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>628</pcr_amplicon_size>
		<canonical_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</canonical_amplicon>
		<polymorphic_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTARTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32737</snp_id>
        <super_contig>c007700538.Contig6</super_contig>
        <contig_pos>63850</contig_pos>
        <strand></strand>
        <context>agtttarttg[G/C]gaaaytgttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTG</left_flank>
        <right_flank>GAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATTGAGACAAAAATCAAGACTCTATCTTAAAAACTAAGCAAGTTATCGCCATTTTTCTGAAATATACTCATTTTATCCTCAAAATAGAGCACCTAGAAAAACGCTTGTAACTCGGCCCATTTTTGCCCAATTTCAGAAATTTTGATAGTTTAGAATTAGCGTGAAGAGGGCTTCAAAATAATTGTAAATTCGCTAAAATCCCAAAATTTTTAACTTTATGAAATTTCGATTTTTTTTCGGATTCTCTATTGTCCCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAACTGGTTCCTCCACCTGATGGGTGCAAATCCAGAGATCCAATCAAAAG</canonical>
            <polymorphic>CGATTGAGACAAAAATCAAGACTCTATCTTAAAAACTAAGCAAGTTATCGCCATTTTTCTGAAATATACTCATTTTATCCTCAAAATAGAGCACCTAGAAAAACGCTTGTAACTCGGCCCATTTTTGCCCAATTTCAGAAATTTTGATAGTTTAGAATTAGCGTGAAGAGGGCTTCAAAATAATTGTAAATTCGCTAAAATCCCAAAATTTTTAACTTTATGAAATTTCGATTTTTTTTCGGATTCTCTATTGTCCCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGSGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAACTGGTTCCTCCACCTGATGGGTGCAAATCCAGAGATCCAATCAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCACTAGTAACTCGGTCAAT</pcr_primer_p1>
		<pcr_primer_p2>ATGTTGAAGCCTAGCAGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>628</pcr_amplicon_size>
		<canonical_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</canonical_amplicon>
		<polymorphic_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGSGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32738</snp_id>
        <super_contig>c007700538.Contig6</super_contig>
        <contig_pos>63855</contig_pos>
        <strand></strand>
        <context>arttgsgaaa[C/T]tgtttgagtt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAA</left_flank>
        <right_flank>TGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGACAAAAATCAAGACTCTATCTTAAAAACTAAGCAAGTTATCGCCATTTTTCTGAAATATACTCATTTTATCCTCAAAATAGAGCACCTAGAAAAACGCTTGTAACTCGGCCCATTTTTGCCCAATTTCAGAAATTTTGATAGTTTAGAATTAGCGTGAAGAGGGCTTCAAAATAATTGTAAATTCGCTAAAATCCCAAAATTTTTAACTTTATGAAATTTCGATTTTTTTTCGGATTCTCTATTGTCCCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAACTGGTTCCTCCACCTGATGGGTGCAAATCCAGAGATCCAATCAAAAGTCCAA</canonical>
            <polymorphic>GAGACAAAAATCAAGACTCTATCTTAAAAACTAAGCAAGTTATCGCCATTTTTCTGAAATATACTCATTTTATCCTCAAAATAGAGCACCTAGAAAAACGCTTGTAACTCGGCCCATTTTTGCCCAATTTCAGAAATTTTGATAGTTTAGAATTAGCGTGAAGAGGGCTTCAAAATAATTGTAAATTCGCTAAAATCCCAAAATTTTTAACTTTATGAAATTTCGATTTTTTTTCGGATTCTCTATTGTCCCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAAYTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAACTGGTTCCTCCACCTGATGGGTGCAAATCCAGAGATCCAATCAAAAGTCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>485 230 169 100 16</canonical_bands>
                <polymorphic_bands>485 230 169 116</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCACTAGTAACTCGGTCAAT</pcr_primer_p1>
		<pcr_primer_p2>ATGTTGAAGCCTAGCAGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>628</pcr_amplicon_size>
		<canonical_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</canonical_amplicon>
		<polymorphic_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAAYTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32739</snp_id>
        <super_contig>c007700538.Contig6</super_contig>
        <contig_pos>63913</contig_pos>
        <strand></strand>
        <context>tttgaaattt[T/A]aaaaaattca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTT</left_flank>
        <right_flank>AAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATACTCATTTTATCCTCAAAATAGAGCACCTAGAAAAACGCTTGTAACTCGGCCCATTTTTGCCCAATTTCAGAAATTTTGATAGTTTAGAATTAGCGTGAAGAGGGCTTCAAAATAATTGTAAATTCGCTAAAATCCCAAAATTTTTAACTTTATGAAATTTCGATTTTTTTTCGGATTCTCTATTGTCCCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAACTGGTTCCTCCACCTGATGGGTGCAAATCCAGAGATCCAATCAAAAGTCCAAAAAGAAATTGATGAGGTTCTAGGAGAAGCGGACCGCCCGATTTCTTATGAAGACTTGG</canonical>
            <polymorphic>ATATACTCATTTTATCCTCAAAATAGAGCACCTAGAAAAACGCTTGTAACTCGGCCCATTTTTGCCCAATTTCAGAAATTTTGATAGTTTAGAATTAGCGTGAAGAGGGCTTCAAAATAATTGTAAATTCGCTAAAATCCCAAAATTTTTAACTTTATGAAATTTCGATTTTTTTTCGGATTCTCTATTGTCCCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTWAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAACTGGTTCCTCCACCTGATGGGTGCAAATCCAGAGATCCAATCAAAAGTCCAAAAAGAAATTGATGAGGTTCTAGGAGAAGCGGACCGCCCGATTTCTTATGAAGACTTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>343 192 166 157 78 64</canonical_bands>
                <polymorphic_bands>343 235 192 166 64</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>193 193 157 149 92 78 74 64</canonical_bands>
                <polymorphic_bands>235 193 193 149 92 74 64</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCACTAGTAACTCGGTCAAT</pcr_primer_p1>
		<pcr_primer_p2>ATGTTGAAGCCTAGCAGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>628</pcr_amplicon_size>
		<canonical_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</canonical_amplicon>
		<polymorphic_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTWAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32740</snp_id>
        <super_contig>c007700538.Contig6</super_contig>
        <contig_pos>63948</contig_pos>
        <strand></strand>
        <context>tcacaaagtt[C/T]agaaaactgt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTT</left_flank>
        <right_flank>AGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAACGCTTGTAACTCGGCCCATTTTTGCCCAATTTCAGAAATTTTGATAGTTTAGAATTAGCGTGAAGAGGGCTTCAAAATAATTGTAAATTCGCTAAAATCCCAAAATTTTTAACTTTATGAAATTTCGATTTTTTTTCGGATTCTCTATTGTCCCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAACTGGTTCCTCCACCTGATGGGTGCAAATCCAGAGATCCAATCAAAAGTCCAAAAAGAAATTGATGAGGTTCTAGGAGAAGCGGACCGCCCGATTTCTTATGAAGACTTGGGAAAATTGAAATATCTAGAAGCCTGTTTCAAAGAA</canonical>
            <polymorphic>AAAAACGCTTGTAACTCGGCCCATTTTTGCCCAATTTCAGAAATTTTGATAGTTTAGAATTAGCGTGAAGAGGGCTTCAAAATAATTGTAAATTCGCTAAAATCCCAAAATTTTTAACTTTATGAAATTTCGATTTTTTTTCGGATTCTCTATTGTCCCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTYAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAACTGGTTCCTCCACCTGATGGGTGCAAATCCAGAGATCCAATCAAAAGTCCAAAAAGAAATTGATGAGGTTCTAGGAGAAGCGGACCGCCCGATTTCTTATGAAGACTTGGGAAAATTGAAATATCTAGAAGCCTGTTTCAAAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>309 212 190 146 104 39</canonical_bands>
                <polymorphic_bands>402 309 146 104 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCACTAGTAACTCGGTCAAT</pcr_primer_p1>
		<pcr_primer_p2>ATGTTGAAGCCTAGCAGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>628</pcr_amplicon_size>
		<canonical_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</canonical_amplicon>
		<polymorphic_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTYAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32741</snp_id>
        <super_contig>c007700538.Contig6</super_contig>
        <contig_pos>63972</contig_pos>
        <strand></strand>
        <context>catttttgaa[G/A]ccagtttcaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAA</left_flank>
        <right_flank>CCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGCCCAATTTCAGAAATTTTGATAGTTTAGAATTAGCGTGAAGAGGGCTTCAAAATAATTGTAAATTCGCTAAAATCCCAAAATTTTTAACTTTATGAAATTTCGATTTTTTTTCGGATTCTCTATTGTCCCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAACTGGTTCCTCCACCTGATGGGTGCAAATCCAGAGATCCAATCAAAAGTCCAAAAAGAAATTGATGAGGTTCTAGGAGAAGCGGACCGCCCGATTTCTTATGAAGACTTGGGAAAATTGAAATATCTAGAAGCCTGTTTCAAAGAAACCCTTCGCCTGTACCCCTCTGTC</canonical>
            <polymorphic>TTTTGCCCAATTTCAGAAATTTTGATAGTTTAGAATTAGCGTGAAGAGGGCTTCAAAATAATTGTAAATTCGCTAAAATCCCAAAATTTTTAACTTTATGAAATTTCGATTTTTTTTCGGATTCTCTATTGTCCCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAARCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAACTGGTTCCTCCACCTGATGGGTGCAAATCCAGAGATCCAATCAAAAGTCCAAAAAGAAATTGATGAGGTTCTAGGAGAAGCGGACCGCCCGATTTCTTATGAAGACTTGGGAAAATTGAAATATCTAGAAGCCTGTTTCAAAGAAACCCTTCGCCTGTACCCCTCTGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>165 158 119 114 111 105 50 41 38 24 19 16 16 12 12</canonical_bands>
                <polymorphic_bands>165 160 158 114 111 105 50 38 24 19 16 16 12 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCACTAGTAACTCGGTCAAT</pcr_primer_p1>
		<pcr_primer_p2>ATGTTGAAGCCTAGCAGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>628</pcr_amplicon_size>
		<canonical_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</canonical_amplicon>
		<polymorphic_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAARCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32742</snp_id>
        <super_contig>c007700538.Contig6</super_contig>
        <contig_pos>63983</contig_pos>
        <strand></strand>
        <context>ccagtttcaa[C/A]aatgctttaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAA</left_flank>
        <right_flank>AATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAGAAATTTTGATAGTTTAGAATTAGCGTGAAGAGGGCTTCAAAATAATTGTAAATTCGCTAAAATCCCAAAATTTTTAACTTTATGAAATTTCGATTTTTTTTCGGATTCTCTATTGTCCCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAACTGGTTCCTCCACCTGATGGGTGCAAATCCAGAGATCCAATCAAAAGTCCAAAAAGAAATTGATGAGGTTCTAGGAGAAGCGGACCGCCCGATTTCTTATGAAGACTTGGGAAAATTGAAATATCTAGAAGCCTGTTTCAAAGAAACCCTTCGCCTGTACCCCTCTGTCCCTTTAATTGC</canonical>
            <polymorphic>TTCAGAAATTTTGATAGTTTAGAATTAGCGTGAAGAGGGCTTCAAAATAATTGTAAATTCGCTAAAATCCCAAAATTTTTAACTTTATGAAATTTCGATTTTTTTTCGGATTCTCTATTGTCCCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAAMAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAACTGGTTCCTCCACCTGATGGGTGCAAATCCAGAGATCCAATCAAAAGTCCAAAAAGAAATTGATGAGGTTCTAGGAGAAGCGGACCGCCCGATTTCTTATGAAGACTTGGGAAAATTGAAATATCTAGAAGCCTGTTTCAAAGAAACCCTTCGCCTGTACCCCTCTGTCCCTTTAATTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCACTAGTAACTCGGTCAAT</pcr_primer_p1>
		<pcr_primer_p2>ATGTTGAAGCCTAGCAGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>628</pcr_amplicon_size>
		<canonical_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</canonical_amplicon>
		<polymorphic_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAAMAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32743</snp_id>
        <super_contig>c007700538.Contig6</super_contig>
        <contig_pos>64012</contig_pos>
        <strand></strand>
        <context>taatcatgac[T/C]tactttccat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGAC</left_flank>
        <right_flank>TACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGAAGAGGGCTTCAAAATAATTGTAAATTCGCTAAAATCCCAAAATTTTTAACTTTATGAAATTTCGATTTTTTTTCGGATTCTCTATTGTCCCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAACTGGTTCCTCCACCTGATGGGTGCAAATCCAGAGATCCAATCAAAAGTCCAAAAAGAAATTGATGAGGTTCTAGGAGAAGCGGACCGCCCGATTTCTTATGAAGACTTGGGAAAATTGAAATATCTAGAAGCCTGTTTCAAAGAAACCCTTCGCCTGTACCCCTCTGTCCCTTTAATTGCCAGACAGTGTGTTGAGGATATCCAGATCA</canonical>
            <polymorphic>GTGAAGAGGGCTTCAAAATAATTGTAAATTCGCTAAAATCCCAAAATTTTTAACTTTATGAAATTTCGATTTTTTTTCGGATTCTCTATTGTCCCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACYTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAACTGGTTCCTCCACCTGATGGGTGCAAATCCAGAGATCCAATCAAAAGTCCAAAAAGAAATTGATGAGGTTCTAGGAGAAGCGGACCGCCCGATTTCTTATGAAGACTTGGGAAAATTGAAATATCTAGAAGCCTGTTTCAAAGAAACCCTTCGCCTGTACCCCTCTGTCCCTTTAATTGCCAGACAGTGTGTTGAGGATATCCAGATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCACTAGTAACTCGGTCAAT</pcr_primer_p1>
		<pcr_primer_p2>ATGTTGAAGCCTAGCAGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>628</pcr_amplicon_size>
		<canonical_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</canonical_amplicon>
		<polymorphic_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACYTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32744</snp_id>
        <super_contig>c007700538.Contig6</super_contig>
        <contig_pos>64023</contig_pos>
        <strand></strand>
        <context>tactttccat[A/G]aatttcattt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCAT</left_flank>
        <right_flank>AATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAAAATAATTGTAAATTCGCTAAAATCCCAAAATTTTTAACTTTATGAAATTTCGATTTTTTTTCGGATTCTCTATTGTCCCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAACTGGTTCCTCCACCTGATGGGTGCAAATCCAGAGATCCAATCAAAAGTCCAAAAAGAAATTGATGAGGTTCTAGGAGAAGCGGACCGCCCGATTTCTTATGAAGACTTGGGAAAATTGAAATATCTAGAAGCCTGTTTCAAAGAAACCCTTCGCCTGTACCCCTCTGTCCCTTTAATTGCCAGACAGTGTGTTGAGGATATCCAGATCAGAGGACACACC</canonical>
            <polymorphic>TTCAAAATAATTGTAAATTCGCTAAAATCCCAAAATTTTTAACTTTATGAAATTTCGATTTTTTTTCGGATTCTCTATTGTCCCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATRAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAACTGGTTCCTCCACCTGATGGGTGCAAATCCAGAGATCCAATCAAAAGTCCAAAAAGAAATTGATGAGGTTCTAGGAGAAGCGGACCGCCCGATTTCTTATGAAGACTTGGGAAAATTGAAATATCTAGAAGCCTGTTTCAAAGAAACCCTTCGCCTGTACCCCTCTGTCCCTTTAATTGCCAGACAGTGTGTTGAGGATATCCAGATCAGAGGACACACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>312 150 133 106 60 51 50 41 37 18 17 15 10</canonical_bands>
                <polymorphic_bands>312 156 150 133 60 51 41 37 18 17 15 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCACTAGTAACTCGGTCAAT</pcr_primer_p1>
		<pcr_primer_p2>ATGTTGAAGCCTAGCAGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>628</pcr_amplicon_size>
		<canonical_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</canonical_amplicon>
		<polymorphic_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATRAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32745</snp_id>
        <super_contig>c007700538.Contig6</super_contig>
        <contig_pos>64059</contig_pos>
        <strand></strand>
        <context>cgcctttaaa[A/G]ycaaaaagtg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAA</left_flank>
        <right_flank>CCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTAACTTTATGAAATTTCGATTTTTTTTCGGATTCTCTATTGTCCCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAACTGGTTCCTCCACCTGATGGGTGCAAATCCAGAGATCCAATCAAAAGTCCAAAAAGAAATTGATGAGGTTCTAGGAGAAGCGGACCGCCCGATTTCTTATGAAGACTTGGGAAAATTGAAATATCTAGAAGCCTGTTTCAAAGAAACCCTTCGCCTGTACCCCTCTGTCCCTTTAATTGCCAGACAGTGTGTTGAGGATATCCAGATCAGAGGACACACCCTTCCATCGGGCACTGCTGTGGTCATGGTACCATCC</canonical>
            <polymorphic>TTTTAACTTTATGAAATTTCGATTTTTTTTCGGATTCTCTATTGTCCCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAARCCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAACTGGTTCCTCCACCTGATGGGTGCAAATCCAGAGATCCAATCAAAAGTCCAAAAAGAAATTGATGAGGTTCTAGGAGAAGCGGACCGCCCGATTTCTTATGAAGACTTGGGAAAATTGAAATATCTAGAAGCCTGTTTCAAAGAAACCCTTCGCCTGTACCCCTCTGTCCCTTTAATTGCCAGACAGTGTGTTGAGGATATCCAGATCAGAGGACACACCCTTCCATCGGGCACTGCTGTGGTCATGGTACCATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCACTAGTAACTCGGTCAAT</pcr_primer_p1>
		<pcr_primer_p2>ATGTTGAAGCCTAGCAGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>628</pcr_amplicon_size>
		<canonical_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</canonical_amplicon>
		<polymorphic_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAARCCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32746</snp_id>
        <super_contig>c007700538.Contig6</super_contig>
        <contig_pos>64060</contig_pos>
        <strand></strand>
        <context>gcctttaaar[C/T]caaaaagtgt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAA</left_flank>
        <right_flank>CAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAACTTTATGAAATTTCGATTTTTTTTCGGATTCTCTATTGTCCCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAACTGGTTCCTCCACCTGATGGGTGCAAATCCAGAGATCCAATCAAAAGTCCAAAAAGAAATTGATGAGGTTCTAGGAGAAGCGGACCGCCCGATTTCTTATGAAGACTTGGGAAAATTGAAATATCTAGAAGCCTGTTTCAAAGAAACCCTTCGCCTGTACCCCTCTGTCCCTTTAATTGCCAGACAGTGTGTTGAGGATATCCAGATCAGAGGACACACCCTTCCATCGGGCACTGCTGTGGTCATGGTACCATCCA</canonical>
            <polymorphic>TTTAACTTTATGAAATTTCGATTTTTTTTCGGATTCTCTATTGTCCCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAAYCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAACTGGTTCCTCCACCTGATGGGTGCAAATCCAGAGATCCAATCAAAAGTCCAAAAAGAAATTGATGAGGTTCTAGGAGAAGCGGACCGCCCGATTTCTTATGAAGACTTGGGAAAATTGAAATATCTAGAAGCCTGTTTCAAAGAAACCCTTCGCCTGTACCCCTCTGTCCCTTTAATTGCCAGACAGTGTGTTGAGGATATCCAGATCAGAGGACACACCCTTCCATCGGGCACTGCTGTGGTCATGGTACCATCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCACTAGTAACTCGGTCAAT</pcr_primer_p1>
		<pcr_primer_p2>ATGTTGAAGCCTAGCAGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>628</pcr_amplicon_size>
		<canonical_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</canonical_amplicon>
		<polymorphic_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAAYCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32747</snp_id>
        <super_contig>c007700538.Contig6</super_contig>
        <contig_pos>64105</contig_pos>
        <strand></strand>
        <context>agtcgtgttt[A/C]ggctcayttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTT</left_flank>
        <right_flank>GGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAACTGGTTCCTCCACCTGATGGGTGCAAATCCAGAGATCCAATCAAAAGTCCAAAAAGAAATTGATGAGGTTCTAGGAGAAGCGGACCGCCCGATTTCTTATGAAGACTTGGGAAAATTGAAATATCTAGAAGCCTGTTTCAAAGAAACCCTTCGCCTGTACCCCTCTGTCCCTTTAATTGCCAGACAGTGTGTTGAGGATATCCAGATCAGAGGACACACCCTTCCATCGGGCACTGCTGTGGTCATGGTACCATCCATGGTACACAAGGATCCCCGCTATTGGGAAGACCCGGAGATTTTCA</canonical>
            <polymorphic>CCCATGGCAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTMGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAACTGGTTCCTCCACCTGATGGGTGCAAATCCAGAGATCCAATCAAAAGTCCAAAAAGAAATTGATGAGGTTCTAGGAGAAGCGGACCGCCCGATTTCTTATGAAGACTTGGGAAAATTGAAATATCTAGAAGCCTGTTTCAAAGAAACCCTTCGCCTGTACCCCTCTGTCCCTTTAATTGCCAGACAGTGTGTTGAGGATATCCAGATCAGAGGACACACCCTTCCATCGGGCACTGCTGTGGTCATGGTACCATCCATGGTACACAAGGATCCCCGCTATTGGGAAGACCCGGAGATTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCACTAGTAACTCGGTCAAT</pcr_primer_p1>
		<pcr_primer_p2>ATGTTGAAGCCTAGCAGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>628</pcr_amplicon_size>
		<canonical_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTMGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</canonical_amplicon>
		<polymorphic_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTMGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32748</snp_id>
        <super_contig>c007700538.Contig6</super_contig>
        <contig_pos>64112</contig_pos>
        <strand></strand>
        <context>tttmggctca[T/C]tttgaagctc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCA</left_flank>
        <right_flank>TTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAACTGGTTCCTCCACCTGATGGGTGCAAATCCAGAGATCCAATCAAAAGTCCAAAAAGAAATTGATGAGGTTCTAGGAGAAGCGGACCGCCCGATTTCTTATGAAGACTTGGGAAAATTGAAATATCTAGAAGCCTGTTTCAAAGAAACCCTTCGCCTGTACCCCTCTGTCCCTTTAATTGCCAGACAGTGTGTTGAGGATATCCAGATCAGAGGACACACCCTTCCATCGGGCACTGCTGTGGTCATGGTACCATCCATGGTACACAAGGATCCCCGCTATTGGGAAGACCCGGAGATTTTCAATCCGGA</canonical>
            <polymorphic>CAAAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCAYTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAACTGGTTCCTCCACCTGATGGGTGCAAATCCAGAGATCCAATCAAAAGTCCAAAAAGAAATTGATGAGGTTCTAGGAGAAGCGGACCGCCCGATTTCTTATGAAGACTTGGGAAAATTGAAATATCTAGAAGCCTGTTTCAAAGAAACCCTTCGCCTGTACCCCTCTGTCCCTTTAATTGCCAGACAGTGTGTTGAGGATATCCAGATCAGAGGACACACCCTTCCATCGGGCACTGCTGTGGTCATGGTACCATCCATGGTACACAAGGATCCCCGCTATTGGGAAGACCCGGAGATTTTCAATCCGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCACTAGTAACTCGGTCAAT</pcr_primer_p1>
		<pcr_primer_p2>ATGTTGAAGCCTAGCAGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>628</pcr_amplicon_size>
		<canonical_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCAYTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</canonical_amplicon>
		<polymorphic_amplicon>AAGCACTAGTAACTCGGTCAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCAYTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32749</snp_id>
        <super_contig>c007700538.Contig6</super_contig>
        <contig_pos>64132</contig_pos>
        <strand></strand>
        <context>ctcaacaata[G/A]aaattcagat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATA</left_flank>
        <right_flank>AAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAACTGGTTCCTCCACCTGATGGGTGCAAATCCAGAGATCCAATCAAAAGTCCAAAAAGAAATTGATGAGGTTCTAGGAGAAGCGGACCGCCCGATTTCTTATGAAGACTTGGGAAAATTGAAATATCTAGAAGCCTGTTTCAAAGAAACCCTTCGCCTGTACCCCTCTGTCCCTTTAATTGCCAGACAGTGTGTTGAGGATATCCAGATCAGAGGACACACCCTTCCATCGGGCACTGCTGTGGTCATGGTACCATCCATGGTACACAAGGATCCCCGCTATTGGGAAGACCCGGAGATTTTCAATCCGGAACGATTCATCAGTGGAGAGC</canonical>
            <polymorphic>CAATTGTTGTCCAATTTTTGTAGTTTTTATATTTTCAAAATTAGCATGAAAAGAGCTTTGAAACTAGTATAATCATGCCCTACTTTCCATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATARAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAACTGGTTCCTCCACCTGATGGGTGCAAATCCAGAGATCCAATCAAAAGTCCAAAAAGAAATTGATGAGGTTCTAGGAGAAGCGGACCGCCCGATTTCTTATGAAGACTTGGGAAAATTGAAATATCTAGAAGCCTGTTTCAAAGAAACCCTTCGCCTGTACCCCTCTGTCCCTTTAATTGCCAGACAGTGTGTTGAGGATATCCAGATCAGAGGACACACCCTTCCATCGGGCACTGCTGTGGTCATGGTACCATCCATGGTACACAAGGATCCCCGCTATTGGGAAGACCCGGAGATTTTCAATCCGGAACGATTCATCAGTGGAGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCACTAGTAACTCGGTCAAT</pcr_primer_p1>
		<pcr_primer_p2>ATGTTGAAGCCTAGCAGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>628</pcr_amplicon_size>
		<canonical_amplicon>AGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</canonical_amplicon>
		<polymorphic_amplicon>ARAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32750</snp_id>
        <super_contig>c007700538.Contig6</super_contig>
        <contig_pos>64219</contig_pos>
        <strand></strand>
        <context>CAAAATTTAT[T/A]TTAAAACTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTAT</left_flank>
        <right_flank>TTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAACTGGTTCCTCCACCTGATGGGTGCAAATCCAGAGATCCAATCAAAAGTCCAAAAAGAAATTGATGAGGTTCTAGGAGAAGCGGACCGCCCGATTTCTTATGAAGACTTGGGAAAATTGAAATATCTAGAAGCCTGTTTCAAAGAAACCCTTCGCCTGTACCCCTCTGTCCCTTTAATTGCCAGACAGTGTGTTGAGGATATCCAGATCAGAGGACACACCCTTCCATCGGGCACTGCTGTGGTCATGGTACCATCCATGGTACACAAGGATCCCCGCTATTGGGAAGACCCGGAGATTTTCAATCCGGAACGATTCATCAGTGGAGAGCTGAAACATCCGTATGCCTATATTCCATTCAGTGCTGGCAGCAGAAATTGTATTGGTGAGTGATTGGGCAAGGAATGGACAAGGGGTG</canonical>
            <polymorphic>CATGAATTTCATTTTTCGGACCCCCAAATGCGCCTTTAAAGTCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAGACGAGTACAGTTTAGTTGGGAAACTGTTTGAGTTACGATAGTTCGAAAAAAATATGAAAAAAGTATTTTTTTTTGAAATTTTAAAAAATTCATTTCTTGGCTAAAATCACAAAGTTCAGAAAACTGTACACATTTTTGAAGCCAGTTTCAACAATGCTTTAAAATGAGTATAATCATGACTTACTTTCCATAAATTTCATTTTTCGTGCCCCCTATGCGCCTTTAAAACCAAAAAGTGTCAAAATTCAAAATGGGCGGAGCCTAGTCGTGTTTAGGCTCATTTTGAAGCTCTCAACAATAGAAATTCAGATTTCTTAAAATATTTTAGTTTGCGCTAAAAATTTTTCGAGTTACGGTATTTTGAAAAACAAAAACATCAAAATTTATWTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCCACGACACGACCTCCGCTGCCATGAACTGGTTCCTCCACCTGATGGGTGCAAATCCAGAGATCCAATCAAAAGTCCAAAAAGAAATTGATGAGGTTCTAGGAGAAGCGGACCGCCCGATTTCTTATGAAGACTTGGGAAAATTGAAATATCTAGAAGCCTGTTTCAAAGAAACCCTTCGCCTGTACCCCTCTGTCCCTTTAATTGCCAGACAGTGTGTTGAGGATATCCAGATCAGAGGACACACCCTTCCATCGGGCACTGCTGTGGTCATGGTACCATCCATGGTACACAAGGATCCCCGCTATTGGGAAGACCCGGAGATTTTCAATCCGGAACGATTCATCAGTGGAGAGCTGAAACATCCGTATGCCTATATTCCATTCAGTGCTGGCAGCAGAAATTGTATTGGTGAGTGATTGGGCAAGGAATGGACAAGGGGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>498 166 157 78 64 37</canonical_bands>
                <polymorphic_bands>664 157 78 64 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCACTAGTAACTCGGTCAAT</pcr_primer_p1>
		<pcr_primer_p2>GGCCTGTAACTTTTTAGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>664</pcr_amplicon_size>
		<canonical_amplicon>TTTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCC</canonical_amplicon>
		<polymorphic_amplicon>TWTTAAAACTGCTAGGCTTCAACATTTCTAGACAGCTCGAAAACCTAAAAAGTTACAGGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32751</snp_id>
        <super_contig>c007700673.Contig4</super_contig>
        <contig_pos>13739</contig_pos>
        <strand></strand>
        <context>tgacaacttt[C/T]tgatatttct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATAGAAGATTTGTCATAATATTGTCAATATTTTATCAGTTGACAACTTT</left_flank>
        <right_flank>TGATATTTCTCATAGGAACCGATATAATTGAGCTCAAAATGTGAGTCTAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACGACGAGAAGGGATAGACTGTATGATTCCAGGAGACGCAGAGAATCATTCCCAACACGCAATTGTTGCATAAACGAACATTTTGGTGCTGTTGGAGGGCAGTATGGCGGCGTCGACCGGAAAGGAAAAAGGAAACTGAGGACTTGGGCAAGAAAAAAGAAAGAGAGCGACTGGGCCAAGTTTTGTTAGAGTCAATTTGGATGGACCAGACGGATTAGGAAGGAGGCTGGGTGGATAGAAAAAATCACTTAATTGAAACGGAAAACTCTTGAATATTCTGATCAGCTTTTTAATAGAGATCTACTATGAAAATTTGTTTAAGGCACCTTGAGAAAACTTATTGTTAACAGTTCTTTCGAAAACGTTTTGAACACTAATCGAACCCTATACTTGAATTTGAGCTTAATTATATTACTTCCTGTGAGAGATATCAAAATTTCGTCAACTGATAGAAGATTTGTCATAATATTGTCAATATTTTATCAGTTGACAACTTTCTGATATTTCTCATAGGAACCGATATAATTGAGCTCAAAATGTGAGTCTAAGGTGGCGTAGTACTAGAACAGGTACGGTAGATTATGTCAAGAAAATTTGATAGAAATTTTAATTTTTGCACTGTAGAACATCAAAAAAGCAATCTGCTAACAATCAAAAATGGCTAACGGGAAATTCGAAAATCCTAGAACCCATTTTATTCTCCTAAACTCTTCTCTATCTCGAATCTAGGCTCCCAAAAACAACAAAAAAAACTATCTCTCGTGACATTTTTTCGCCAGTATCGCTTCTAGCCGAAAAGGCCCCATCTAATTTTCTTTATTCACTTCTTTTTCTCTTTTTTTCGTCTTTTCTTGGTGTCTCTAAACAACAAAAAACGAGTCGGACGGAGCCTCATCTGCTTTGAATATATCCAGAGTCAGTTCCATCACCGACACTTCTTTTTTTGCTCCAGAAAACAGAAAAAACGGCTTGGGGTTTTTTGGGAGAGAGGCGGAGGG</canonical>
            <polymorphic>AAACGACGAGAAGGGATAGACTGTATGATTCCAGGAGACGCAGAGAATCATTCCCAACACGCAATTGTTGCATAAACGAACATTTTGGTGCTGTTGGAGGGCAGTATGGCGGCGTCGACCGGAAAGGAAAAAGGAAACTGAGGACTTGGGCAAGAAAAAAGAAAGAGAGCGACTGGGCCAAGTTTTGTTAGAGTCAATTTGGATGGACCAGACGGATTAGGAAGGAGGCTGGGTGGATAGAAAAAATCACTTAATTGAAACGGAAAACTCTTGAATATTCTGATCAGCTTTTTAATAGAGATCTACTATGAAAATTTGTTTAAGGCACCTTGAGAAAACTTATTGTTAACAGTTCTTTCGAAAACGTTTTGAACACTAATCGAACCCTATACTTGAATTTGAGCTTAATTATATTACTTCCTGTGAGAGATATCAAAATTTCGTCAACTGATAGAAGATTTGTCATAATATTGTCAATATTTTATCAGTTGACAACTTTYTGATATTTCTCATAGGAACCGATATAATTGAGCTCAAAATGTGAGTCTAAGGTGGCGTAGTACTAGAACAGGTACGGTAGATTATGTCAAGAAAATTTGATAGAAATTTTAATTTTTGCACTGTAGAACATCAAAAAAGCAATCTGCTAACAATCAAAAATGGCTAACGGGAAATTCGAAAATCCTAGAACCCATTTTATTCTCCTAAACTCTTCTCTATCTCGAATCTAGGCTCCCAAAAACAACAAAAAAAACTATCTCTCGTGACATTTTTTCGCCAGTATCGCTTCTAGCCGAAAAGGCCCCATCTAATTTTCTTTATTCACTTCTTTTTCTCTTTTTTTCGTCTTTTCTTGGTGTCTCTAAACAACAAAAAACGAGTCGGACGGAGCCTCATCTGCTTTGAATATATCCAGAGTCAGTTCCATCACCGACACTTCTTTTTTTGCTCCAGAAAACAGAAAAAACGGCTTGGGGTTTTTTGGGAGAGAGGCGGAGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>383 281 220 116</canonical_bands>
                <polymorphic_bands>603 281 116</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAGGCACCTTGAGAAAACTTA</pcr_primer_p1>
		<pcr_primer_p2>TTCTAGTACTACGCCACCTTAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TAAGGCACCTTGAGAAAACTTATTGTTAACAGTTCTTTCGAAAACGTTTTGAACACTAATCGAACCCTATACTTGAATTTGAGCTTAATTATATTACTTCCTGTGAGAGATATCAAAATTTCGTCAACTGATAGAAGATTTGTCATAATATTGTCAATATTTTATCAGTTGACAACTTTCTGATATTTCTCATAGGAACCGATATAATTGAGCTCAAAATGTGAGTCTAAGGTGGCGTAGTACTAGAA</canonical_amplicon>
		<polymorphic_amplicon>TAAGGCACCTTGAGAAAACTTATTGTTAACAGTTCTTTCGAAAACGTTTTGAACACTAATCGAACCCTATACTTGAATTTGAGCTTAATTATATTACTTCCTGTGAGAGATATCAAAATTTCGTCAACTGATAGAAGATTTGTCATAATATTGTCAATATTTTATCAGTTGACAACTTTYTGATATTTCTCATAGGAACCGATATAATTGAGCTCAAAATGTGAGTCTAAGGTGGCGTAGTACTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32752</snp_id>
        <super_contig>c007700673.Contig4</super_contig>
        <contig_pos>17000</contig_pos>
        <strand>+</strand>
        <context>ACACTCAAAA[A/C]AAATKTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGCTTCCCCACTTTTTTGGATGATAGCCTTCATTCTTTCACACTCAAAA</left_flank>
        <right_flank>AAATGTTTTTCGACTTTTCTAAAACTCGCTCTACTGATAAAATGATTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTTCAATTATCCTTAAAATCGAAAAGTATCTCAATTAGGAAGGGGGATTCTAGTCACTAAAAAACACAGAAAATCCCGCAGAAGTCATCAAAGTTCAATACAGATAATCTCCATGTACAACTAGGTTATTGTACTACTGAAAAATGTTGCAAAACGGTGGTTGTCTTTTGCCTCCTCCTAACATAGACAGATCACCAAACAAATCATTTTGGTATTTAGTTGTTTGTGAGTCACCTTTTCGAAATATGCGCACTACTAAAGTCAAAAGTGTTGACATGAAGAACAAGAAGGAGGGAAAGAGAGAAAGATAGGTTCGGGTTGAATAACACTTGAGAATCAAACCTAACAAAAATGAGACAAATTCAGTGGAAGCGGATAGGGGAGGAGACACGGATATGTAGACTACTTTTTGATTTATTTCTTCCCCCATACAAAATGCTTCCGACTTTGCTTCCCCACTTTTTTGGATGATAGCCTTCATTCTTTCACACTCAAAAAAAATGTTTTTCGACTTTTCTAAAACTCGCTCTACTGATAAAATGATTTCAGTAATATCCCGAGTGTATGTGTATCCATCTCTCTGTACACACATACATGAAACAGTGTAATGTGAGCTAATTTCGGCAAAGTAGAGGAAGACAAATAGAGGGAATCGGGAAGCGTACAGAGAGGGAGAGAAAGTGGTTTTGAAATGATGAATCAATTCAATGTTTCTAGAAGAAAGGGGAGGGGGACATGTTTGGAAATTTGACAAGGTGAATGTTCCGTTAGGTATGAAAAAAGGGGATTTTGAGAAAAAAGGATTTGAAATTTATGGGCACAAAATTGAGGTTTTATCATCGCAATCATTGTCCGAAGGCTTATTATGAGGAAGTTGAAACCGAAATTTTTCAAAAAGGTCAGGATGTCTGTGGACTTGACGTTTCTAGGATTCTAAGAATAGCCGTTCTGTTTAAAACTGGAAAAAATACTAAAATGTTTTGAGCTTGAATTTTTCT</canonical>
            <polymorphic>CACTTCAATTATCCTTAAAATCGAAAAGTATCTCAATTAGGAAGGGGGATTCTAGTCACTAAAAAACACAGAAAATCCCGCAGAAGTCATCAAAGTTCAATACAGATAATCTCCATGTACAACTAGGTTATTGTACTACTGAAAAATGTTGCAAAACGGTGGTTGTCTTTTGCCTCCTCCTAACATAGACAGATCACCAAACAAATCATTTTGGTATTTAGTTGTTTGTGAGTCACCTTTTCGAAATATGCGCACTACTAAAGTCAAAAGTGTTGACATGAAGAACAAGAAGGAGGGAAAGAGAGAAAGATAGGTTCGGGTTGAATAACACTTGAGAATCAAACCTAACAAAAATGAGACAAATTCAGTGGAAGCGGATAGGGGAGGAGACACGGATATGTAGACTACTTTTTGATTTATTTCTTCCCCCATACAAAATGCTTCCGACTTTGCTTCCCCACTTTTTTGGATGATAGCCTTCATTCTTTCACACTCAAAAMAAATGTTTTTCGACTTTTCTAAAACTCGCTCTACTGATAAAATGATTTCAGTAATATCCCGAGTGTATGTGTATCCATCTCTCTGTACACACATACATGAAACAGTGTAATGTGAGCTAATTTCGGCAAAGTAGAGGAAGACAAATAGAGGGAATCGGGAAGCGTACAGAGAGGGAGAGAAAGTGGTTTTGAAATGATGAATCAATTCAATGTTTCTAGAAGAAAGGGGAGGGGGACATGTTTGGAAATTTGACAAGGTGAATGTTCCGTTAGGTATGAAAAAAGGGGATTTTGAGAAAAAAGGATTTGAAATTTATGGGCACAAAATTGAGGTTTTATCATCGCAATCATTGTCCGAAGGCTTATTATGAGGAAGTTGAAACCGAAATTTTTCAAAAAGGTCAGGATGTCTGTGGACTTGACGTTTCTAGGATTCTAAGAATAGCCGTTCTGTTTAAAACTGGAAAAAATACTAAAATGTTTTGAGCTTGAATTTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAATAACACTTGAGAATCAAAC</pcr_primer_p1>
		<pcr_primer_p2>ACATACACTCGGGATATTACTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGAATAACACTTGAGAATCAAACCTAACAAAAATGAGACAAATTCAGTGGAAGCGGATAGGGGAGGAGACACGGATATGTAGACTACTTTTTGATTTATTTCTTCCCCCATACAAAATGCTTCCGACTTTGCTTCCCCACTTTTTTGGATGATAGCCTTCATTCTTTCACACTCAAAAAAAATGTTTTTCGACTTTTCTAAAACTCGCTCTACTGATAAAATGATTTCAGTAATATCCCGAGTGTATGT</canonical_amplicon>
		<polymorphic_amplicon>TTGAATAACACTTGAGAATCAAACCTAACAAAAATGAGACAAATTCAGTGGAAGCGGATAGGGGAGGAGACACGGATATGTAGACTACTTTTTGATTTATTTCTTCCCCCATACAAAATGCTTCCGACTTTGCTTCCCCACTTTTTTGGATGATAGCCTTCATTCTTTCACACTCAAAAMAAATGTTTTTCGACTTTTCTAAAACTCGCTCTACTGATAAAATGATTTCAGTAATATCCCGAGTGTATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32753</snp_id>
        <super_contig>c007700673.Contig4</super_contig>
        <contig_pos>17005</contig_pos>
        <strand>+</strand>
        <context>CAAAAMAAAT[G/T]TTTTTCGACT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCCCCACTTTTTTGGATGATAGCCTTCATTCTTTCACACTCAAAAAAAAT</left_flank>
        <right_flank>TTTTTCGACTTTTCTAAAACTCGCTCTACTGATAAAATGATTTCAGTAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTATCCTTAAAATCGAAAAGTATCTCAATTAGGAAGGGGGATTCTAGTCACTAAAAAACACAGAAAATCCCGCAGAAGTCATCAAAGTTCAATACAGATAATCTCCATGTACAACTAGGTTATTGTACTACTGAAAAATGTTGCAAAACGGTGGTTGTCTTTTGCCTCCTCCTAACATAGACAGATCACCAAACAAATCATTTTGGTATTTAGTTGTTTGTGAGTCACCTTTTCGAAATATGCGCACTACTAAAGTCAAAAGTGTTGACATGAAGAACAAGAAGGAGGGAAAGAGAGAAAGATAGGTTCGGGTTGAATAACACTTGAGAATCAAACCTAACAAAAATGAGACAAATTCAGTGGAAGCGGATAGGGGAGGAGACACGGATATGTAGACTACTTTTTGATTTATTTCTTCCCCCATACAAAATGCTTCCGACTTTGCTTCCCCACTTTTTTGGATGATAGCCTTCATTCTTTCACACTCAAAAAAAATGTTTTTCGACTTTTCTAAAACTCGCTCTACTGATAAAATGATTTCAGTAATATCCCGAGTGTATGTGTATCCATCTCTCTGTACACACATACATGAAACAGTGTAATGTGAGCTAATTTCGGCAAAGTAGAGGAAGACAAATAGAGGGAATCGGGAAGCGTACAGAGAGGGAGAGAAAGTGGTTTTGAAATGATGAATCAATTCAATGTTTCTAGAAGAAAGGGGAGGGGGACATGTTTGGAAATTTGACAAGGTGAATGTTCCGTTAGGTATGAAAAAAGGGGATTTTGAGAAAAAAGGATTTGAAATTTATGGGCACAAAATTGAGGTTTTATCATCGCAATCATTGTCCGAAGGCTTATTATGAGGAAGTTGAAACCGAAATTTTTCAAAAAGGTCAGGATGTCTGTGGACTTGACGTTTCTAGGATTCTAAGAATAGCCGTTCTGTTTAAAACTGGAAAAAATACTAAAATGTTTTGAGCTTGAATTTTTCTAAAAA</canonical>
            <polymorphic>CAATTATCCTTAAAATCGAAAAGTATCTCAATTAGGAAGGGGGATTCTAGTCACTAAAAAACACAGAAAATCCCGCAGAAGTCATCAAAGTTCAATACAGATAATCTCCATGTACAACTAGGTTATTGTACTACTGAAAAATGTTGCAAAACGGTGGTTGTCTTTTGCCTCCTCCTAACATAGACAGATCACCAAACAAATCATTTTGGTATTTAGTTGTTTGTGAGTCACCTTTTCGAAATATGCGCACTACTAAAGTCAAAAGTGTTGACATGAAGAACAAGAAGGAGGGAAAGAGAGAAAGATAGGTTCGGGTTGAATAACACTTGAGAATCAAACCTAACAAAAATGAGACAAATTCAGTGGAAGCGGATAGGGGAGGAGACACGGATATGTAGACTACTTTTTGATTTATTTCTTCCCCCATACAAAATGCTTCCGACTTTGCTTCCCCACTTTTTTGGATGATAGCCTTCATTCTTTCACACTCAAAAAAAATKTTTTTCGACTTTTCTAAAACTCGCTCTACTGATAAAATGATTTCAGTAATATCCCGAGTGTATGTGTATCCATCTCTCTGTACACACATACATGAAACAGTGTAATGTGAGCTAATTTCGGCAAAGTAGAGGAAGACAAATAGAGGGAATCGGGAAGCGTACAGAGAGGGAGAGAAAGTGGTTTTGAAATGATGAATCAATTCAATGTTTCTAGAAGAAAGGGGAGGGGGACATGTTTGGAAATTTGACAAGGTGAATGTTCCGTTAGGTATGAAAAAAGGGGATTTTGAGAAAAAAGGATTTGAAATTTATGGGCACAAAATTGAGGTTTTATCATCGCAATCATTGTCCGAAGGCTTATTATGAGGAAGTTGAAACCGAAATTTTTCAAAAAGGTCAGGATGTCTGTGGACTTGACGTTTCTAGGATTCTAAGAATAGCCGTTCTGTTTAAAACTGGAAAAAATACTAAAATGTTTTGAGCTTGAATTTTTCTAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAATAACACTTGAGAATCAAAC</pcr_primer_p1>
		<pcr_primer_p2>ACATACACTCGGGATATTACTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGAATAACACTTGAGAATCAAACCTAACAAAAATGAGACAAATTCAGTGGAAGCGGATAGGGGAGGAGACACGGATATGTAGACTACTTTTTGATTTATTTCTTCCCCCATACAAAATGCTTCCGACTTTGCTTCCCCACTTTTTTGGATGATAGCCTTCATTCTTTCACACTCAAAAAAAATGTTTTTCGACTTTTCTAAAACTCGCTCTACTGATAAAATGATTTCAGTAATATCCCGAGTGTATGT</canonical_amplicon>
		<polymorphic_amplicon>TTGAATAACACTTGAGAATCAAACCTAACAAAAATGAGACAAATTCAGTGGAAGCGGATAGGGGAGGAGACACGGATATGTAGACTACTTTTTGATTTATTTCTTCCCCCATACAAAATGCTTCCGACTTTGCTTCCCCACTTTTTTGGATGATAGCCTTCATTCTTTCACACTCAAAAAAAATKTTTTTCGACTTTTCTAAAACTCGCTCTACTGATAAAATGATTTCAGTAATATCCCGAGTGTATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32754</snp_id>
        <super_contig>c007700673.Contig4</super_contig>
        <contig_pos>17074</contig_pos>
        <strand>+</strand>
        <context>TGTATGTGTA[C/T]CCATCTCTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTCGCTCTACTGATAAAATGATTTCAGTAATATCCCGAGTGTATGTGTA</left_flank>
        <right_flank>CCATCTCTCTGTACACACATACATGAAACAGTGTAATGTGAGCTAATTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCCGCAGAAGTCATCAAAGTTCAATACAGATAATCTCCATGTACAACTAGGTTATTGTACTACTGAAAAATGTTGCAAAACGGTGGTTGTCTTTTGCCTCCTCCTAACATAGACAGATCACCAAACAAATCATTTTGGTATTTAGTTGTTTGTGAGTCACCTTTTCGAAATATGCGCACTACTAAAGTCAAAAGTGTTGACATGAAGAACAAGAAGGAGGGAAAGAGAGAAAGATAGGTTCGGGTTGAATAACACTTGAGAATCAAACCTAACAAAAATGAGACAAATTCAGTGGAAGCGGATAGGGGAGGAGACACGGATATGTAGACTACTTTTTGATTTATTTCTTCCCCCATACAAAATGCTTCCGACTTTGCTTCCCCACTTTTTTGGATGATAGCCTTCATTCTTTCACACTCAAAAAAAATGTTTTTCGACTTTTCTAAAACTCGCTCTACTGATAAAATGATTTCAGTAATATCCCGAGTGTATGTGTATCCATCTCTCTGTACACACATACATGAAACAGTGTAATGTGAGCTAATTTCGGCAAAGTAGAGGAAGACAAATAGAGGGAATCGGGAAGCGTACAGAGAGGGAGAGAAAGTGGTTTTGAAATGATGAATCAATTCAATGTTTCTAGAAGAAAGGGGAGGGGGACATGTTTGGAAATTTGACAAGGTGAATGTTCCGTTAGGTATGAAAAAAGGGGATTTTGAGAAAAAAGGATTTGAAATTTATGGGCACAAAATTGAGGTTTTATCATCGCAATCATTGTCCGAAGGCTTATTATGAGGAAGTTGAAACCGAAATTTTTCAAAAAGGTCAGGATGTCTGTGGACTTGACGTTTCTAGGATTCTAAGAATAGCCGTTCTGTTTAAAACTGGAAAAAATACTAAAATGTTTTGAGCTTGAATTTTTCTAAAAATCAACGACTTAATCAATGCGCAGTACTTAAAAAGTGAAAAATATTTACAGAGAATTTCAACTAGATTTC</canonical>
            <polymorphic>ATCCCGCAGAAGTCATCAAAGTTCAATACAGATAATCTCCATGTACAACTAGGTTATTGTACTACTGAAAAATGTTGCAAAACGGTGGTTGTCTTTTGCCTCCTCCTAACATAGACAGATCACCAAACAAATCATTTTGGTATTTAGTTGTTTGTGAGTCACCTTTTCGAAATATGCGCACTACTAAAGTCAAAAGTGTTGACATGAAGAACAAGAAGGAGGGAAAGAGAGAAAGATAGGTTCGGGTTGAATAACACTTGAGAATCAAACCTAACAAAAATGAGACAAATTCAGTGGAAGCGGATAGGGGAGGAGACACGGATATGTAGACTACTTTTTGATTTATTTCTTCCCCCATACAAAATGCTTCCGACTTTGCTTCCCCACTTTTTTGGATGATAGCCTTCATTCTTTCACACTCAAAAAAAATGTTTTTCGACTTTTCTAAAACTCGCTCTACTGATAAAATGATTTCAGTAATATCCCGAGTGTATGTGTAYCCATCTCTCTGTACACACATACATGAAACAGTGTAATGTGAGCTAATTTCGGCAAAGTAGAGGAAGACAAATAGAGGGAATCGGGAAGCGTACAGAGAGGGAGAGAAAGTGGTTTTGAAATGATGAATCAATTCAATGTTTCTAGAAGAAAGGGGAGGGGGACATGTTTGGAAATTTGACAAGGTGAATGTTCCGTTAGGTATGAAAAAAGGGGATTTTGAGAAAAAAGGATTTGAAATTTATGGGCACAAAATTGAGGTTTTATCATCGCAATCATTGTCCGAAGGCTTATTATGAGGAAGTTGAAACCGAAATTTTTCAAAAAGGTCAGGATGTCTGTGGACTTGACGTTTCTAGGATTCTAAGAATAGCCGTTCTGTTTAAAACTGGAAAAAATACTAAAATGTTTTGAGCTTGAATTTTTCTAAAAATCAACGACTTAATCAATGCGCAGTACTTAAAAAGTGAAAAATATTTACAGAGAATTTCAACTAGATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCATTCTTTCACACTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCCTTTCTTCTAGAAACATTGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTTCATTCTTTCACACTCAAAAAAAATGTTTTTCGACTTTTCTAAAACTCGCTCTACTGATAAAATGATTTCAGTAATATCCCGAGTGTATGTGTATCCATCTCTCTGTACACACATACATGAAACAGTGTAATGTGAGCTAATTTCGGCAAAGTAGAGGAAGACAAATAGAGGGAATCGGGAAGCGTACAGAGAGGGAGAGAAAGTGGTTTTGAAATGATGAATCAATTCAATGTTTCTAGAAGAAAGGG</canonical_amplicon>
		<polymorphic_amplicon>CTTCATTCTTTCACACTCAAAAAAAATGTTTTTCGACTTTTCTAAAACTCGCTCTACTGATAAAATGATTTCAGTAATATCCCGAGTGTATGTGTAYCCATCTCTCTGTACACACATACATGAAACAGTGTAATGTGAGCTAATTTCGGCAAAGTAGAGGAAGACAAATAGAGGGAATCGGGAAGCGTACAGAGAGGGAGAGAAAGTGGTTTTGAAATGATGAATCAATTCAATGTTTCTAGAAGAAAGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32755</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>14780</contig_pos>
        <strand>+</strand>
        <context>ATGATTTGAC[A/G]ACCGCCCAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGACAATCTGTCCATGTCAAAACTTGATTTTGATGGTAAGATGATTTGAC</left_flank>
        <right_flank>ACCGCCCAGGTAGATTTTCCTGCACGTGATTCTGATGAGATGGGTTTTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACGGGTAAATCTTTAGATTTAAGCATCTTGGAAGCACGAAAATTGGTAGAAATATAATTTTACGTTTCATTCAAAGCTACTAAAATTTTCAAAGCGGTTGTTCAAGGTATTGTTATGATTGTTCAAAGATGAATGTTTCTTGTGATTTTGATGAGATGAAGCAACTTTGAAAAACGGTAACTCAGCTCAAAGTTGACCGAATAATTTGAACCTTGGCCAGTTTACTGATGAACTATTTGAATTTTTGCATTCCAAATTTTAGCTCAATACAACAAAAAACGTTTTTTTTTTCAAATTTTATTCTGGGTAATCATGAGCCAACCTGTAGTTTCCCGAAATTTAGCCTGAATGTTGAGAAAACCATTTTTTGAACCTCGAAATTAGATTTATTCAGATAGTTCTTGAACCTTTGTAGCCTGAAAACTGTAGTTTGGATAATAAGTTCAGGTGACAATCTGTCCATGTCAAAACTTGATTTTGATGGTAAGATGATTTGACGACCGCCCAGGTAGATTTTCCTGCACGTGATTCTGATGAGATGGGTTTTATAAGATCACTCATACTTTTTATTAGGAACAGAAACGTATACCTTCAACAGGACTGGAAGATTTTTTTCGACTCGGCCGGGTCACCCGAGTCGAGCCGGGTTTTCGGGTCGTCTTTGAATTTGACAAATATGCAGAATAGGGATTCCTTTAGCTATTTTTTGATTTTTTTTTCTCTTCAAATTCAAACACTAACTTTGTCTATTTATTTCCACATCACCTCCATTTGAGGTTTATTTCCAAAAACCAAATGATTCATGTCTAAATACGAATTTTTCAATATCTGATTCATTCTTTTTTCCTCTCTTCCTCGTTTTTTTTCAGTCTAATTCTTGTTGATATGATTTTCATTCTTCGATTGAAAAAATCTTGATAAGTTCTTAAACACACACAAAATCTCATTTTATTTGCTCTATGACCTTCCCGCGAAATGTCTACTTTGAATTTCTCCGAA</canonical>
            <polymorphic>AACGGGTAAATCTTTAGATTTAAGCATCTTGGAAGCACGAAAATTGGTAGAAATATAATTTTACGTTTCATTCAAAGCTACTAAAATTTTCAAAGCGGTTGTTCAAGGTATTGTTATGATTGTTCAAAGATGAATGTTTCTTGTGATTTTGATGAGATGAAGCAACTTTGAAAAACGGTAACTCAGCTCAAAGTTGACCGAATAATTTGAACCTTGGCCAGTTTACTGATGAACTATTTGAATTTTTGCATTCCAAATTTTAGCTCAATACAACAAAAAACGTTTTTTTTTTCAAATTTTATTCTGGGTAATCATGAGCCAACCTGTAGTTTCCCGAAATTTAGCCTGAATGTTGAGAAAACCATTTTTTGAACCTCGAAATTAGATTTATTCAGATAGTTCTTGAACCTTTGTAGCCTGAAAACTGTAGTTTGGATAATAAGTTCAGGTGACAATCTGTCCATGTCAAAACTTGATTTTGATGGTAAGATGATTTGACRACCGCCCAGGTAGATTTTCCTGCACGTGATTCTGATGAGATGGGTTTTATAAGATCACTCATACTTTTTATTAGGAACAGAAACGTATACCTTCAACAGGACTGGAAGATTTTTTTCGACTCGGCCGGGTCACCCGAGTCGAGCCGGGTTTTCGGGTCGTCTTTGAATTTGACAAATATGCAGAATAGGGATTCCTTTAGCTATTTTTTGATTTTTTTTTCTCTTCAAATTCAAACACTAACTTTGTCTATTTATTTCCACATCACCTCCATTTGAGGTTTATTTCCAAAAACCAAATGATTCATGTCTAAATACGAATTTTTCAATATCTGATTCATTCTTTTTTCCTCTCTTCCTCGTTTTTTTTCAGTCTAATTCTTGTTGATATGATTTTCATTCTTCGATTGAAAAAATCTTGATAAGTTCTTAAACACACACAAAATCTCATTTTATTTGCTCTATGACCTTCCCGCGAAATGTCTACTTTGAATTTCTCCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>502 375 123</canonical_bands>
                <polymorphic_bands>625 375</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATCATGAGCCAACCTGTAG</pcr_primer_p1>
		<pcr_primer_p2>GTGATCTTATAAAACCCATCTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAATCATGAGCCAACCTGTAGTTTCCCGAAATTTAGCCTGAATGTTGAGAAAACCATTTTTTGAACCTCGAAATTAGATTTATTCAGATAGTTCTTGAACCTTTGTAGCCTGAAAACTGTAGTTTGGATAATAAGTTCAGGTGACAATCTGTCCATGTCAAAACTTGATTTTGATGGTAAGATGATTTGACGACCGCCCAGGTAGATTTTCCTGCACGTGATTCTGATGAGATGGGTTTTATAAGATCAC</canonical_amplicon>
		<polymorphic_amplicon>TAATCATGAGCCAACCTGTAGTTTCCCGAAATTTAGCCTGAATGTTGAGAAAACCATTTTTTGAACCTCGAAATTAGATTTATTCAGATAGTTCTTGAACCTTTGTAGCCTGAAAACTGTAGTTTGGATAATAAGTTCAGGTGACAATCTGTCCATGTCAAAACTTGATTTTGATGGTAAGATGATTTGACRACCGCCCAGGTAGATTTTCCTGCACGTGATTCTGATGAGATGGGTTTTATAAGATCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32756</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>28678</contig_pos>
        <strand></strand>
        <context>gaagtacagt[C/A]swccgaaaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CCGCTCGAGACCCACAAAAAAACTTCTTGCGTGCGCCTTTGAAGTACAGT</left_flank>
        <right_flank>CACCGAAAATTTCTAGTTCCGAGAAAGAGCTTCGGAAACATTCCGATTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTGCCACTAATTTTTTTTCTTAATTCGGTCCGTAGTTAGCATTTTGATCAGGGATGTTCGGAATGGCCTTTTCGGAATGGGGAGAAACTTCAAAATTTCAAAACTTATAGATTTTGGATATTTGAAAAAAACCCCGGTTTTGAAAACTTCGGAATATTCCGATTTTGAAAATTTCGATTTTTTTCAAATTTTTGGAATACCCCGATTTTCGGAATTTTCAAAATTTGGTAATATTCCGATTCTCATATTATCGGAATTTTTAATTTTTTGGAATTTTCAAAATTTCGGATTTGAAATACCGTTTTCTCGGAAAAAGTCGAAAATTTCGCTTCGGAATTTATAATAGTCGCATTTTAAAGTATTTTGGAATCAAATTTTTCCATCACGAAATCGCGAAAAATGGACAAAAAGATGTAAAGAACTCGAATAAAAATATTGCAAGAAATTCCGCTCGAGACCCACAAAAAAACTTCTTGCGTGCGCCTTTGAAGTACAGTCCACCGAAAATTTCTAGTTCCGAGAAAGAGCTTCGGAAACATTCCGATTTTTTTTCGAGTTTTACTTTCTTCGTTCTCAAAGATGTTTCAATTTTATATCAGAAACATAGTCTTCCATCTCTCCATAAATCTTACTCAAGTCTTACTCTGTATATCTGTTCATCCAATCTAGCTACTTCCGACACTTCTTCCACTCCCAAAAACTTGCATATCTCTCTCTTTGTTCCATTATCCTTACATCGCCCATAGAGCCACCCCGAAACTACTTCTCGCAGCTTTTTCCCTATAATTAGATGCTCCTGACGACCAAGTCTCGCTTCGTTAGGTGCTCCGAATGACTTGATTACATCTTCTTCTTCTTTCTTCCAAAAAGAAGCCGTTTGCAAAGCATCTTCTTCTTTCTTTTCCTTCAAAAAAAAGTACGTTTCCTCAATGAGTTTTCCTTCCAATTTCCCCTCAAAGGATTATGTCTTTCCGAAAGAGGCGGAACTTAAAATACTT</canonical>
            <polymorphic>GGCTGCCACTAATTTTTTTTCTTAATTCGGTCCGTAGTTAGCATTTTGATCAGGGATGTTCGGAATGGCCTTTTCGGAATGGGGAGAAACTTCAAAATTTCAAAACTTATAGATTTTGGATATTTGAAAAAAACCCCGGTTTTGAAAACTTCGGAATATTCCGATTTTGAAAATTTCGATTTTTTTCAAATTTTTGGAATACCCCGATTTTCGGAATTTTCAAAATTTGGTAATATTCCGATTCTCATATTATCGGAATTTTTAATTTTTTGGAATTTTCAAAATTTCGGATTTGAAATACCGTTTTCTCGGAAAAAGTCGAAAATTTCGCTTCGGAATTTATAATAGTCGCATTTTAAAGTATTTTGGAATCAAATTTTTCCATCACGAAATCGCGAAAAATGGACAAAAAGATGTAAAGAACTCGAATAAAAATATTGCAAGAAATTCCGCTCGAGACCCACAAAAAAACTTCTTGCGTGCGCCTTTGAAGTACAGTMCACCGAAAATTTCTAGTTCCGAGAAAGAGCTTCGGAAACATTCCGATTTTTTTTCGAGTTTTACTTTCTTCGTTCTCAAAGATGTTTCAATTTTATATCAGAAACATAGTCTTCCATCTCTCCATAAATCTTACTCAAGTCTTACTCTGTATATCTGTTCATCCAATCTAGCTACTTCCGACACTTCTTCCACTCCCAAAAACTTGCATATCTCTCTCTTTGTTCCATTATCCTTACATCGCCCATAGAGCCACCCCGAAACTACTTCTCGCAGCTTTTTCCCTATAATTAGATGCTCCTGACGACCAAGTCTCGCTTCGTTAGGTGCTCCGAATGACTTGATTACATCTTCTTCTTCTTTCTTCCAAAAAGAAGCCGTTTGCAAAGCATCTTCTTCTTTCTTTTCCTTCAAAAAAAAGTACGTTTCCTCAATGAGTTTTCCTTCCAATTTCCCCTCAAAGGATTATGTCTTTCCGAAAGAGGCGGAACTTAAAATACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCCGTAGTTAGCATTTTG</pcr_primer_p1>
		<pcr_primer_p2>TCTTTGAGAACGAAGAAAGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>554</pcr_amplicon_size>
		<canonical_amplicon>GGTCCGTAGTTAGCATTTTGATCAGGGATGTTCGGAATGGCCTTTTCGGAATGGGGAGAAACTTCAAAATTTCAAAACTTATAGATTTTGGATATTTGAAAAAAACCCCGGTTTTGAAAACTTCGGAATATTCCGATTTTGAAAATTTCGATTTTTTTCAAATTTTTGGAATACCCCGATTTTCGGAATTTTCAAAATTTGGTAATATTCCGATTCTCATATTATCGGAATTTTTAATTTTTTGGAATTTTCAAAATTTCGGATTTGAAATACCGTTTTCTCGGAAAAAGTCGAAAATTTCGCTTCGGAATTTATAATAGTCGCATTTTAAAGTATTTTGGAATCAAATTTTTCCATCACGAAATCGCGAAAAATGGACAAAAAGATGTAAAGAACTCGAATAAAAATATTGCAAGAAATTCCGCTCGAGACCCACAAAAAAACTTCTTGCGTGCGCCTTTGAAGTACAGTCCACCGAAAATTTCTAGTTCCGAGAAAGAGCTTCGGAAACATTCCGATTTTTTTTCGAGTTTTACTTTCTTCGTTCTCAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GGTCCGTAGTTAGCATTTTGATCAGGGATGTTCGGAATGGCCTTTTCGGAATGGGGAGAAACTTCAAAATTTCAAAACTTATAGATTTTGGATATTTGAAAAAAACCCCGGTTTTGAAAACTTCGGAATATTCCGATTTTGAAAATTTCGATTTTTTTCAAATTTTTGGAATACCCCGATTTTCGGAATTTTCAAAATTTGGTAATATTCCGATTCTCATATTATCGGAATTTTTAATTTTTTGGAATTTTCAAAATTTCGGATTTGAAATACCGTTTTCTCGGAAAAAGTCGAAAATTTCGCTTCGGAATTTATAATAGTCGCATTTTAAAGTATTTTGGAATCAAATTTTTCCATCACGAAATCGCGAAAAATGGACAAAAAGATGTAAAGAACTCGAATAAAAATATTGCAAGAAATTCCGCTCGAGACCCACAAAAAAACTTCTTGCGTGCGCCTTTGAAGTACAGTMCACCGAAAATTTCTAGTTCCGAGAAAGAGCTTCGGAAACATTCCGATTTTTTTTCGAGTTTTACTTTCTTCGTTCTCAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32757</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>28679</contig_pos>
        <strand></strand>
        <context>aagtacagtm[C/G]wccgaaaatt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGCTCGAGACCCACAAAAAAACTTCTTGCGTGCGCCTTTGAAGTACAGTC</left_flank>
        <right_flank>ACCGAAAATTTCTAGTTCCGAGAAAGAGCTTCGGAAACATTCCGATTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTGCCACTAATTTTTTTTCTTAATTCGGTCCGTAGTTAGCATTTTGATCAGGGATGTTCGGAATGGCCTTTTCGGAATGGGGAGAAACTTCAAAATTTCAAAACTTATAGATTTTGGATATTTGAAAAAAACCCCGGTTTTGAAAACTTCGGAATATTCCGATTTTGAAAATTTCGATTTTTTTCAAATTTTTGGAATACCCCGATTTTCGGAATTTTCAAAATTTGGTAATATTCCGATTCTCATATTATCGGAATTTTTAATTTTTTGGAATTTTCAAAATTTCGGATTTGAAATACCGTTTTCTCGGAAAAAGTCGAAAATTTCGCTTCGGAATTTATAATAGTCGCATTTTAAAGTATTTTGGAATCAAATTTTTCCATCACGAAATCGCGAAAAATGGACAAAAAGATGTAAAGAACTCGAATAAAAATATTGCAAGAAATTCCGCTCGAGACCCACAAAAAAACTTCTTGCGTGCGCCTTTGAAGTACAGTCCACCGAAAATTTCTAGTTCCGAGAAAGAGCTTCGGAAACATTCCGATTTTTTTTCGAGTTTTACTTTCTTCGTTCTCAAAGATGTTTCAATTTTATATCAGAAACATAGTCTTCCATCTCTCCATAAATCTTACTCAAGTCTTACTCTGTATATCTGTTCATCCAATCTAGCTACTTCCGACACTTCTTCCACTCCCAAAAACTTGCATATCTCTCTCTTTGTTCCATTATCCTTACATCGCCCATAGAGCCACCCCGAAACTACTTCTCGCAGCTTTTTCCCTATAATTAGATGCTCCTGACGACCAAGTCTCGCTTCGTTAGGTGCTCCGAATGACTTGATTACATCTTCTTCTTCTTTCTTCCAAAAAGAAGCCGTTTGCAAAGCATCTTCTTCTTTCTTTTCCTTCAAAAAAAAGTACGTTTCCTCAATGAGTTTTCCTTCCAATTTCCCCTCAAAGGATTATGTCTTTCCGAAAGAGGCGGAACTTAAAATACTTT</canonical>
            <polymorphic>GCTGCCACTAATTTTTTTTCTTAATTCGGTCCGTAGTTAGCATTTTGATCAGGGATGTTCGGAATGGCCTTTTCGGAATGGGGAGAAACTTCAAAATTTCAAAACTTATAGATTTTGGATATTTGAAAAAAACCCCGGTTTTGAAAACTTCGGAATATTCCGATTTTGAAAATTTCGATTTTTTTCAAATTTTTGGAATACCCCGATTTTCGGAATTTTCAAAATTTGGTAATATTCCGATTCTCATATTATCGGAATTTTTAATTTTTTGGAATTTTCAAAATTTCGGATTTGAAATACCGTTTTCTCGGAAAAAGTCGAAAATTTCGCTTCGGAATTTATAATAGTCGCATTTTAAAGTATTTTGGAATCAAATTTTTCCATCACGAAATCGCGAAAAATGGACAAAAAGATGTAAAGAACTCGAATAAAAATATTGCAAGAAATTCCGCTCGAGACCCACAAAAAAACTTCTTGCGTGCGCCTTTGAAGTACAGTCSACCGAAAATTTCTAGTTCCGAGAAAGAGCTTCGGAAACATTCCGATTTTTTTTCGAGTTTTACTTTCTTCGTTCTCAAAGATGTTTCAATTTTATATCAGAAACATAGTCTTCCATCTCTCCATAAATCTTACTCAAGTCTTACTCTGTATATCTGTTCATCCAATCTAGCTACTTCCGACACTTCTTCCACTCCCAAAAACTTGCATATCTCTCTCTTTGTTCCATTATCCTTACATCGCCCATAGAGCCACCCCGAAACTACTTCTCGCAGCTTTTTCCCTATAATTAGATGCTCCTGACGACCAAGTCTCGCTTCGTTAGGTGCTCCGAATGACTTGATTACATCTTCTTCTTCTTTCTTCCAAAAAGAAGCCGTTTGCAAAGCATCTTCTTCTTTCTTTTCCTTCAAAAAAAAGTACGTTTCCTCAATGAGTTTTCCTTCCAATTTCCCCTCAAAGGATTATGTCTTTCCGAAAGAGGCGGAACTTAAAATACTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>379 181 174 76 74 61 20 19 9 7</canonical_bands>
                <polymorphic_bands>379 201 174 76 74 61 19 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTCCGTAGTTAGCATTTTG</pcr_primer_p1>
		<pcr_primer_p2>TCTTTGAGAACGAAGAAAGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>554</pcr_amplicon_size>
		<canonical_amplicon>GGTCCGTAGTTAGCATTTTGATCAGGGATGTTCGGAATGGCCTTTTCGGAATGGGGAGAAACTTCAAAATTTCAAAACTTATAGATTTTGGATATTTGAAAAAAACCCCGGTTTTGAAAACTTCGGAATATTCCGATTTTGAAAATTTCGATTTTTTTCAAATTTTTGGAATACCCCGATTTTCGGAATTTTCAAAATTTGGTAATATTCCGATTCTCATATTATCGGAATTTTTAATTTTTTGGAATTTTCAAAATTTCGGATTTGAAATACCGTTTTCTCGGAAAAAGTCGAAAATTTCGCTTCGGAATTTATAATAGTCGCATTTTAAAGTATTTTGGAATCAAATTTTTCCATCACGAAATCGCGAAAAATGGACAAAAAGATGTAAAGAACTCGAATAAAAATATTGCAAGAAATTCCGCTCGAGACCCACAAAAAAACTTCTTGCGTGCGCCTTTGAAGTACAGTCCACCGAAAATTTCTAGTTCCGAGAAAGAGCTTCGGAAACATTCCGATTTTTTTTCGAGTTTTACTTTCTTCGTTCTCAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GGTCCGTAGTTAGCATTTTGATCAGGGATGTTCGGAATGGCCTTTTCGGAATGGGGAGAAACTTCAAAATTTCAAAACTTATAGATTTTGGATATTTGAAAAAAACCCCGGTTTTGAAAACTTCGGAATATTCCGATTTTGAAAATTTCGATTTTTTTCAAATTTTTGGAATACCCCGATTTTCGGAATTTTCAAAATTTGGTAATATTCCGATTCTCATATTATCGGAATTTTTAATTTTTTGGAATTTTCAAAATTTCGGATTTGAAATACCGTTTTCTCGGAAAAAGTCGAAAATTTCGCTTCGGAATTTATAATAGTCGCATTTTAAAGTATTTTGGAATCAAATTTTTCCATCACGAAATCGCGAAAAATGGACAAAAAGATGTAAAGAACTCGAATAAAAATATTGCAAGAAATTCCGCTCGAGACCCACAAAAAAACTTCTTGCGTGCGCCTTTGAAGTACAGTCSACCGAAAATTTCTAGTTCCGAGAAAGAGCTTCGGAAACATTCCGATTTTTTTTCGAGTTTTACTTTCTTCGTTCTCAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32758</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>28680</contig_pos>
        <strand></strand>
        <context>agtacagtms[A/T]ccgaaaattt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTCGAGACCCACAAAAAAACTTCTTGCGTGCGCCTTTGAAGTACAGTCC</left_flank>
        <right_flank>CCGAAAATTTCTAGTTCCGAGAAAGAGCTTCGGAAACATTCCGATTTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGCCACTAATTTTTTTTCTTAATTCGGTCCGTAGTTAGCATTTTGATCAGGGATGTTCGGAATGGCCTTTTCGGAATGGGGAGAAACTTCAAAATTTCAAAACTTATAGATTTTGGATATTTGAAAAAAACCCCGGTTTTGAAAACTTCGGAATATTCCGATTTTGAAAATTTCGATTTTTTTCAAATTTTTGGAATACCCCGATTTTCGGAATTTTCAAAATTTGGTAATATTCCGATTCTCATATTATCGGAATTTTTAATTTTTTGGAATTTTCAAAATTTCGGATTTGAAATACCGTTTTCTCGGAAAAAGTCGAAAATTTCGCTTCGGAATTTATAATAGTCGCATTTTAAAGTATTTTGGAATCAAATTTTTCCATCACGAAATCGCGAAAAATGGACAAAAAGATGTAAAGAACTCGAATAAAAATATTGCAAGAAATTCCGCTCGAGACCCACAAAAAAACTTCTTGCGTGCGCCTTTGAAGTACAGTCCACCGAAAATTTCTAGTTCCGAGAAAGAGCTTCGGAAACATTCCGATTTTTTTTCGAGTTTTACTTTCTTCGTTCTCAAAGATGTTTCAATTTTATATCAGAAACATAGTCTTCCATCTCTCCATAAATCTTACTCAAGTCTTACTCTGTATATCTGTTCATCCAATCTAGCTACTTCCGACACTTCTTCCACTCCCAAAAACTTGCATATCTCTCTCTTTGTTCCATTATCCTTACATCGCCCATAGAGCCACCCCGAAACTACTTCTCGCAGCTTTTTCCCTATAATTAGATGCTCCTGACGACCAAGTCTCGCTTCGTTAGGTGCTCCGAATGACTTGATTACATCTTCTTCTTCTTTCTTCCAAAAAGAAGCCGTTTGCAAAGCATCTTCTTCTTTCTTTTCCTTCAAAAAAAAGTACGTTTCCTCAATGAGTTTTCCTTCCAATTTCCCCTCAAAGGATTATGTCTTTCCGAAAGAGGCGGAACTTAAAATACTTTG</canonical>
            <polymorphic>CTGCCACTAATTTTTTTTCTTAATTCGGTCCGTAGTTAGCATTTTGATCAGGGATGTTCGGAATGGCCTTTTCGGAATGGGGAGAAACTTCAAAATTTCAAAACTTATAGATTTTGGATATTTGAAAAAAACCCCGGTTTTGAAAACTTCGGAATATTCCGATTTTGAAAATTTCGATTTTTTTCAAATTTTTGGAATACCCCGATTTTCGGAATTTTCAAAATTTGGTAATATTCCGATTCTCATATTATCGGAATTTTTAATTTTTTGGAATTTTCAAAATTTCGGATTTGAAATACCGTTTTCTCGGAAAAAGTCGAAAATTTCGCTTCGGAATTTATAATAGTCGCATTTTAAAGTATTTTGGAATCAAATTTTTCCATCACGAAATCGCGAAAAATGGACAAAAAGATGTAAAGAACTCGAATAAAAATATTGCAAGAAATTCCGCTCGAGACCCACAAAAAAACTTCTTGCGTGCGCCTTTGAAGTACAGTCCWCCGAAAATTTCTAGTTCCGAGAAAGAGCTTCGGAAACATTCCGATTTTTTTTCGAGTTTTACTTTCTTCGTTCTCAAAGATGTTTCAATTTTATATCAGAAACATAGTCTTCCATCTCTCCATAAATCTTACTCAAGTCTTACTCTGTATATCTGTTCATCCAATCTAGCTACTTCCGACACTTCTTCCACTCCCAAAAACTTGCATATCTCTCTCTTTGTTCCATTATCCTTACATCGCCCATAGAGCCACCCCGAAACTACTTCTCGCAGCTTTTTCCCTATAATTAGATGCTCCTGACGACCAAGTCTCGCTTCGTTAGGTGCTCCGAATGACTTGATTACATCTTCTTCTTCTTTCTTCCAAAAAGAAGCCGTTTGCAAAGCATCTTCTTCTTTCTTTTCCTTCAAAAAAAAGTACGTTTCCTCAATGAGTTTTCCTTCCAATTTCCCCTCAAAGGATTATGTCTTTCCGAAAGAGGCGGAACTTAAAATACTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>379 181 175 76 74 61 20 19 9 6</canonical_bands>
                <polymorphic_bands>379 201 175 76 74 61 19 9 6</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTCCGTAGTTAGCATTTTG</pcr_primer_p1>
		<pcr_primer_p2>TCTTTGAGAACGAAGAAAGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>554</pcr_amplicon_size>
		<canonical_amplicon>GGTCCGTAGTTAGCATTTTGATCAGGGATGTTCGGAATGGCCTTTTCGGAATGGGGAGAAACTTCAAAATTTCAAAACTTATAGATTTTGGATATTTGAAAAAAACCCCGGTTTTGAAAACTTCGGAATATTCCGATTTTGAAAATTTCGATTTTTTTCAAATTTTTGGAATACCCCGATTTTCGGAATTTTCAAAATTTGGTAATATTCCGATTCTCATATTATCGGAATTTTTAATTTTTTGGAATTTTCAAAATTTCGGATTTGAAATACCGTTTTCTCGGAAAAAGTCGAAAATTTCGCTTCGGAATTTATAATAGTCGCATTTTAAAGTATTTTGGAATCAAATTTTTCCATCACGAAATCGCGAAAAATGGACAAAAAGATGTAAAGAACTCGAATAAAAATATTGCAAGAAATTCCGCTCGAGACCCACAAAAAAACTTCTTGCGTGCGCCTTTGAAGTACAGTCCACCGAAAATTTCTAGTTCCGAGAAAGAGCTTCGGAAACATTCCGATTTTTTTTCGAGTTTTACTTTCTTCGTTCTCAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GGTCCGTAGTTAGCATTTTGATCAGGGATGTTCGGAATGGCCTTTTCGGAATGGGGAGAAACTTCAAAATTTCAAAACTTATAGATTTTGGATATTTGAAAAAAACCCCGGTTTTGAAAACTTCGGAATATTCCGATTTTGAAAATTTCGATTTTTTTCAAATTTTTGGAATACCCCGATTTTCGGAATTTTCAAAATTTGGTAATATTCCGATTCTCATATTATCGGAATTTTTAATTTTTTGGAATTTTCAAAATTTCGGATTTGAAATACCGTTTTCTCGGAAAAAGTCGAAAATTTCGCTTCGGAATTTATAATAGTCGCATTTTAAAGTATTTTGGAATCAAATTTTTCCATCACGAAATCGCGAAAAATGGACAAAAAGATGTAAAGAACTCGAATAAAAATATTGCAAGAAATTCCGCTCGAGACCCACAAAAAAACTTCTTGCGTGCGCCTTTGAAGTACAGTCCWCCGAAAATTTCTAGTTCCGAGAAAGAGCTTCGGAAACATTCCGATTTTTTTTCGAGTTTTACTTTCTTCGTTCTCAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32759</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>28725</contig_pos>
        <strand>+</strand>
        <context>aacattccga[A/T]TTTTTTTCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTCCACCGAAAATTTCTAGTTCCGAGAAAGAGCTTCGGAAACATTCCGA</left_flank>
        <right_flank>TTTTTTTCGAGTTTTACTTTCTTCGTTCTCAAAGATGTTTCAATTTTATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCAGGGATGTTCGGAATGGCCTTTTCGGAATGGGGAGAAACTTCAAAATTTCAAAACTTATAGATTTTGGATATTTGAAAAAAACCCCGGTTTTGAAAACTTCGGAATATTCCGATTTTGAAAATTTCGATTTTTTTCAAATTTTTGGAATACCCCGATTTTCGGAATTTTCAAAATTTGGTAATATTCCGATTCTCATATTATCGGAATTTTTAATTTTTTGGAATTTTCAAAATTTCGGATTTGAAATACCGTTTTCTCGGAAAAAGTCGAAAATTTCGCTTCGGAATTTATAATAGTCGCATTTTAAAGTATTTTGGAATCAAATTTTTCCATCACGAAATCGCGAAAAATGGACAAAAAGATGTAAAGAACTCGAATAAAAATATTGCAAGAAATTCCGCTCGAGACCCACAAAAAAACTTCTTGCGTGCGCCTTTGAAGTACAGTCCACCGAAAATTTCTAGTTCCGAGAAAGAGCTTCGGAAACATTCCGATTTTTTTTCGAGTTTTACTTTCTTCGTTCTCAAAGATGTTTCAATTTTATATCAGAAACATAGTCTTCCATCTCTCCATAAATCTTACTCAAGTCTTACTCTGTATATCTGTTCATCCAATCTAGCTACTTCCGACACTTCTTCCACTCCCAAAAACTTGCATATCTCTCTCTTTGTTCCATTATCCTTACATCGCCCATAGAGCCACCCCGAAACTACTTCTCGCAGCTTTTTCCCTATAATTAGATGCTCCTGACGACCAAGTCTCGCTTCGTTAGGTGCTCCGAATGACTTGATTACATCTTCTTCTTCTTTCTTCCAAAAAGAAGCCGTTTGCAAAGCATCTTCTTCTTTCTTTTCCTTCAAAAAAAAGTACGTTTCCTCAATGAGTTTTCCTTCCAATTTCCCCTCAAAGGATTATGTCTTTCCGAAAGAGGCGGAACTTAAAATACTTTGGAAACTTTTTGCTTCTCATTCTTCTTTTTTTGCAGTCAACATAGT</canonical>
            <polymorphic>GATCAGGGATGTTCGGAATGGCCTTTTCGGAATGGGGAGAAACTTCAAAATTTCAAAACTTATAGATTTTGGATATTTGAAAAAAACCCCGGTTTTGAAAACTTCGGAATATTCCGATTTTGAAAATTTCGATTTTTTTCAAATTTTTGGAATACCCCGATTTTCGGAATTTTCAAAATTTGGTAATATTCCGATTCTCATATTATCGGAATTTTTAATTTTTTGGAATTTTCAAAATTTCGGATTTGAAATACCGTTTTCTCGGAAAAAGTCGAAAATTTCGCTTCGGAATTTATAATAGTCGCATTTTAAAGTATTTTGGAATCAAATTTTTCCATCACGAAATCGCGAAAAATGGACAAAAAGATGTAAAGAACTCGAATAAAAATATTGCAAGAAATTCCGCTCGAGACCCACAAAAAAACTTCTTGCGTGCGCCTTTGAAGTACAGTCCACCGAAAATTTCTAGTTCCGAGAAAGAGCTTCGGAAACATTCCGAWTTTTTTTCGAGTTTTACTTTCTTCGTTCTCAAAGATGTTTCAATTTTATATCAGAAACATAGTCTTCCATCTCTCCATAAATCTTACTCAAGTCTTACTCTGTATATCTGTTCATCCAATCTAGCTACTTCCGACACTTCTTCCACTCCCAAAAACTTGCATATCTCTCTCTTTGTTCCATTATCCTTACATCGCCCATAGAGCCACCCCGAAACTACTTCTCGCAGCTTTTTCCCTATAATTAGATGCTCCTGACGACCAAGTCTCGCTTCGTTAGGTGCTCCGAATGACTTGATTACATCTTCTTCTTCTTTCTTCCAAAAAGAAGCCGTTTGCAAAGCATCTTCTTCTTTCTTTTCCTTCAAAAAAAAGTACGTTTCCTCAATGAGTTTTCCTTCCAATTTCCCCTCAAAGGATTATGTCTTTCCGAAAGAGGCGGAACTTAAAATACTTTGGAAACTTTTTGCTTCTCATTCTTCTTTTTTTGCAGTCAACATAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCCGTAGTTAGCATTTTG</pcr_primer_p1>
		<pcr_primer_p2>GTTTCTGATATAAAATTGAAACATCT</pcr_primer_p2>
		<pcr_amplicon_size>577</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTTTTCGAGTTTTACTTTCTTCGTTCTCAAAGATGTTTCAATTTTATATCAGAAAC</canonical_amplicon>
		<polymorphic_amplicon>AWTTTTTTTCGAGTTTTACTTTCTTCGTTCTCAAAGATGTTTCAATTTTATATCAGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32760</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>28737</contig_pos>
        <strand></strand>
        <context>TTTTTTCGAG[T/A]TTTACTTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATTTCTAGTTCCGAGAAAGAGCTTCGGAAACATTCCGATTTTTTTTCGAG</left_flank>
        <right_flank>TTTACTTTCTTCGTTCTCAAAGATGTTTCAATTTTATATCAGAAACATAG</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGAATGGCCTTTTCGGAATGGGGAGAAACTTCAAAATTTCAAAACTTATAGATTTTGGATATTTGAAAAAAACCCCGGTTTTGAAAACTTCGGAATATTCCGATTTTGAAAATTTCGATTTTTTTCAAATTTTTGGAATACCCCGATTTTCGGAATTTTCAAAATTTGGTAATATTCCGATTCTCATATTATCGGAATTTTTAATTTTTTGGAATTTTCAAAATTTCGGATTTGAAATACCGTTTTCTCGGAAAAAGTCGAAAATTTCGCTTCGGAATTTATAATAGTCGCATTTTAAAGTATTTTGGAATCAAATTTTTCCATCACGAAATCGCGAAAAATGGACAAAAAGATGTAAAGAACTCGAATAAAAATATTGCAAGAAATTCCGCTCGAGACCCACAAAAAAACTTCTTGCGTGCGCCTTTGAAGTACAGTCCACCGAAAATTTCTAGTTCCGAGAAAGAGCTTCGGAAACATTCCGATTTTTTTTCGAGTTTTACTTTCTTCGTTCTCAAAGATGTTTCAATTTTATATCAGAAACATAGTCTTCCATCTCTCCATAAATCTTACTCAAGTCTTACTCTGTATATCTGTTCATCCAATCTAGCTACTTCCGACACTTCTTCCACTCCCAAAAACTTGCATATCTCTCTCTTTGTTCCATTATCCTTACATCGCCCATAGAGCCACCCCGAAACTACTTCTCGCAGCTTTTTCCCTATAATTAGATGCTCCTGACGACCAAGTCTCGCTTCGTTAGGTGCTCCGAATGACTTGATTACATCTTCTTCTTCTTTCTTCCAAAAAGAAGCCGTTTGCAAAGCATCTTCTTCTTTCTTTTCCTTCAAAAAAAAGTACGTTTCCTCAATGAGTTTTCCTTCCAATTTCCCCTCAAAGGATTATGTCTTTCCGAAAGAGGCGGAACTTAAAATACTTTGGAAACTTTTTGCTTCTCATTCTTCTTTTTTTGCAGTCAACATAGTACTTTTTCCCTA</canonical>
            <polymorphic>TCGGAATGGCCTTTTCGGAATGGGGAGAAACTTCAAAATTTCAAAACTTATAGATTTTGGATATTTGAAAAAAACCCCGGTTTTGAAAACTTCGGAATATTCCGATTTTGAAAATTTCGATTTTTTTCAAATTTTTGGAATACCCCGATTTTCGGAATTTTCAAAATTTGGTAATATTCCGATTCTCATATTATCGGAATTTTTAATTTTTTGGAATTTTCAAAATTTCGGATTTGAAATACCGTTTTCTCGGAAAAAGTCGAAAATTTCGCTTCGGAATTTATAATAGTCGCATTTTAAAGTATTTTGGAATCAAATTTTTCCATCACGAAATCGCGAAAAATGGACAAAAAGATGTAAAGAACTCGAATAAAAATATTGCAAGAAATTCCGCTCGAGACCCACAAAAAAACTTCTTGCGTGCGCCTTTGAAGTACAGTCCACCGAAAATTTCTAGTTCCGAGAAAGAGCTTCGGAAACATTCCGATTTTTTTTCGAGWTTTACTTTCTTCGTTCTCAAAGATGTTTCAATTTTATATCAGAAACATAGTCTTCCATCTCTCCATAAATCTTACTCAAGTCTTACTCTGTATATCTGTTCATCCAATCTAGCTACTTCCGACACTTCTTCCACTCCCAAAAACTTGCATATCTCTCTCTTTGTTCCATTATCCTTACATCGCCCATAGAGCCACCCCGAAACTACTTCTCGCAGCTTTTTCCCTATAATTAGATGCTCCTGACGACCAAGTCTCGCTTCGTTAGGTGCTCCGAATGACTTGATTACATCTTCTTCTTCTTTCTTCCAAAAAGAAGCCGTTTGCAAAGCATCTTCTTCTTTCTTTTCCTTCAAAAAAAAGTACGTTTCCTCAATGAGTTTTCCTTCCAATTTCCCCTCAAAGGATTATGTCTTTCCGAAAGAGGCGGAACTTAAAATACTTTGGAAACTTTTTGCTTCTCATTCTTCTTTTTTTGCAGTCAACATAGTACTTTTTCCCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCCGTAGTTAGCATTTTG</pcr_primer_p1>
		<pcr_primer_p2>GAGATGGAAGACTATGTTTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>592</pcr_amplicon_size>
		<canonical_amplicon>GTTTTACTTTCTTCGTTCTCAAAGATGTTTCAATTTTATATCAGAAACATAGTCTTCCATCTC</canonical_amplicon>
		<polymorphic_amplicon>GWTTTACTTTCTTCGTTCTCAAAGATGTTTCAATTTTATATCAGAAACATAGTCTTCCATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32761</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>28851</contig_pos>
        <strand>+</strand>
        <context>CCAATCTAGC[C/T]ACTTCCGACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATAAATCTTACTCAAGTCTTACTCTGTATATCTGTTCATCCAATCTAGC</left_flank>
        <right_flank>ACTTCCGACACTTCTTCCACTCCCAAAAACTTGCATATCTCTCTCTTTGT</right_flank>
        <qual_score>145</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGATTTTTTTCAAATTTTTGGAATACCCCGATTTTCGGAATTTTCAAAATTTGGTAATATTCCGATTCTCATATTATCGGAATTTTTAATTTTTTGGAATTTTCAAAATTTCGGATTTGAAATACCGTTTTCTCGGAAAAAGTCGAAAATTTCGCTTCGGAATTTATAATAGTCGCATTTTAAAGTATTTTGGAATCAAATTTTTCCATCACGAAATCGCGAAAAATGGACAAAAAGATGTAAAGAACTCGAATAAAAATATTGCAAGAAATTCCGCTCGAGACCCACAAAAAAACTTCTTGCGTGCGCCTTTGAAGTACAGTCCACCGAAAATTTCTAGTTCCGAGAAAGAGCTTCGGAAACATTCCGATTTTTTTTCGAGTTTTACTTTCTTCGTTCTCAAAGATGTTTCAATTTTATATCAGAAACATAGTCTTCCATCTCTCCATAAATCTTACTCAAGTCTTACTCTGTATATCTGTTCATCCAATCTAGCTACTTCCGACACTTCTTCCACTCCCAAAAACTTGCATATCTCTCTCTTTGTTCCATTATCCTTACATCGCCCATAGAGCCACCCCGAAACTACTTCTCGCAGCTTTTTCCCTATAATTAGATGCTCCTGACGACCAAGTCTCGCTTCGTTAGGTGCTCCGAATGACTTGATTACATCTTCTTCTTCTTTCTTCCAAAAAGAAGCCGTTTGCAAAGCATCTTCTTCTTTCTTTTCCTTCAAAAAAAAGTACGTTTCCTCAATGAGTTTTCCTTCCAATTTCCCCTCAAAGGATTATGTCTTTCCGAAAGAGGCGGAACTTAAAATACTTTGGAAACTTTTTGCTTCTCATTCTTCTTTTTTTGCAGTCAACATAGTACTTTTTCCCTATTTGTTATCAGCAAAAACCCACTATCAGCACAAAATGCAAATCCCGTTTTTTTCGATTTCTAAAGTTTCAAGAAACCAGCAACCAGCATCTTGTTCCTTTTTGTCAGCTTTTGT</canonical>
            <polymorphic>TTTCGATTTTTTTCAAATTTTTGGAATACCCCGATTTTCGGAATTTTCAAAATTTGGTAATATTCCGATTCTCATATTATCGGAATTTTTAATTTTTTGGAATTTTCAAAATTTCGGATTTGAAATACCGTTTTCTCGGAAAAAGTCGAAAATTTCGCTTCGGAATTTATAATAGTCGCATTTTAAAGTATTTTGGAATCAAATTTTTCCATCACGAAATCGCGAAAAATGGACAAAAAGATGTAAAGAACTCGAATAAAAATATTGCAAGAAATTCCGCTCGAGACCCACAAAAAAACTTCTTGCGTGCGCCTTTGAAGTACAGTCCACCGAAAATTTCTAGTTCCGAGAAAGAGCTTCGGAAACATTCCGATTTTTTTTCGAGTTTTACTTTCTTCGTTCTCAAAGATGTTTCAATTTTATATCAGAAACATAGTCTTCCATCTCTCCATAAATCTTACTCAAGTCTTACTCTGTATATCTGTTCATCCAATCTAGCYACTTCCGACACTTCTTCCACTCCCAAAAACTTGCATATCTCTCTCTTTGTTCCATTATCCTTACATCGCCCATAGAGCCACCCCGAAACTACTTCTCGCAGCTTTTTCCCTATAATTAGATGCTCCTGACGACCAAGTCTCGCTTCGTTAGGTGCTCCGAATGACTTGATTACATCTTCTTCTTCTTTCTTCCAAAAAGAAGCCGTTTGCAAAGCATCTTCTTCTTTCTTTTCCTTCAAAAAAAAGTACGTTTCCTCAATGAGTTTTCCTTCCAATTTCCCCTCAAAGGATTATGTCTTTCCGAAAGAGGCGGAACTTAAAATACTTTGGAAACTTTTTGCTTCTCATTCTTCTTTTTTTGCAGTCAACATAGTACTTTTTCCCTATTTGTTATCAGCAAAAACCCACTATCAGCACAAAATGCAAATCCCGTTTTTTTCGATTTCTAAAGTTTCAAGAAACCAGCAACCAGCATCTTGTTCCTTTTTGTCAGCTTTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>392 356 142 103 7</canonical_bands>
                <polymorphic_bands>392 356 245 7</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>356 291 142 101 79 24 7</canonical_bands>
                <polymorphic_bands>356 291 221 101 24 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTTCCATCTCTCCATAAATCT</pcr_primer_p1>
		<pcr_primer_p2>GAAGAAGAAGATGTAATCAAGTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCTTCCATCTCTCCATAAATCTTACTCAAGTCTTACTCTGTATATCTGTTCATCCAATCTAGCTACTTCCGACACTTCTTCCACTCCCAAAAACTTGCATATCTCTCTCTTTGTTCCATTATCCTTACATCGCCCATAGAGCCACCCCGAAACTACTTCTCGCAGCTTTTTCCCTATAATTAGATGCTCCTGACGACCAAGTCTCGCTTCGTTAGGTGCTCCGAATGACTTGATTACATCTTCTTCTTC</canonical_amplicon>
		<polymorphic_amplicon>GTCTTCCATCTCTCCATAAATCTTACTCAAGTCTTACTCTGTATATCTGTTCATCCAATCTAGCYACTTCCGACACTTCTTCCACTCCCAAAAACTTGCATATCTCTCTCTTTGTTCCATTATCCTTACATCGCCCATAGAGCCACCCCGAAACTACTTCTCGCAGCTTTTTCCCTATAATTAGATGCTCCTGACGACCAAGTCTCGCTTCGTTAGGTGCTCCGAATGACTTGATTACATCTTCTTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32762</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>29258</contig_pos>
        <strand>+</strand>
        <context>GCAAAAACCC[A/T]CTATCAGCAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTGCAGTCAACATAGTACTTTTTCCCTATTTGTTATCAGCAAAAACCC</left_flank>
        <right_flank>CTATCAGCACAAAATGCAAATCCCGTTTTTTTCGATTTCTAAAGTTTCAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGTTTCAATTTTATATCAGAAACATAGTCTTCCATCTCTCCATAAATCTTACTCAAGTCTTACTCTGTATATCTGTTCATCCAATCTAGCTACTTCCGACACTTCTTCCACTCCCAAAAACTTGCATATCTCTCTCTTTGTTCCATTATCCTTACATCGCCCATAGAGCCACCCCGAAACTACTTCTCGCAGCTTTTTCCCTATAATTAGATGCTCCTGACGACCAAGTCTCGCTTCGTTAGGTGCTCCGAATGACTTGATTACATCTTCTTCTTCTTTCTTCCAAAAAGAAGCCGTTTGCAAAGCATCTTCTTCTTTCTTTTCCTTCAAAAAAAAGTACGTTTCCTCAATGAGTTTTCCTTCCAATTTCCCCTCAAAGGATTATGTCTTTCCGAAAGAGGCGGAACTTAAAATACTTTGGAAACTTTTTGCTTCTCATTCTTCTTTTTTTGCAGTCAACATAGTACTTTTTCCCTATTTGTTATCAGCAAAAACCCACTATCAGCACAAAATGCAAATCCCGTTTTTTTCGATTTCTAAAGTTTCAAGAAACCAGCAACCAGCATCTTGTTCCTTTTTGTCAGCTTTTGTTTATTGTTTACATTCGCCCGTTTTCCTTTATTTTTGGCTCGTATCGCCTTGTATCGCCCCGTCGAACCAAATTTCCTTTTTTTCATGCCAAGACAAATGCCGAAAAGTAATCTCTGTCCGGGAGAGGGCAACTATTTATCTCTCTTTCGTCTTTTTTTCTGCCGTTTTTACTTCCGATAGCATACATATACTTTCAGGTCGGACTCATTACTTCGTCTTGCTTCGGACTTCCATATACCAATATTTTAGGATAATATTTATATTTTTAAGATAATTTATATTATTTAAAGTGAGTTCCTTTCGGATGAAAACCGATATTCTTATTTTGACTCTTTATTTTCAGAATGAAAAAGCTGAAACGAAGACTGTCGGCGGCGTTCCGTCCGGGAAGCAACAACAACGTGAGC</canonical>
            <polymorphic>GATGTTTCAATTTTATATCAGAAACATAGTCTTCCATCTCTCCATAAATCTTACTCAAGTCTTACTCTGTATATCTGTTCATCCAATCTAGCTACTTCCGACACTTCTTCCACTCCCAAAAACTTGCATATCTCTCTCTTTGTTCCATTATCCTTACATCGCCCATAGAGCCACCCCGAAACTACTTCTCGCAGCTTTTTCCCTATAATTAGATGCTCCTGACGACCAAGTCTCGCTTCGTTAGGTGCTCCGAATGACTTGATTACATCTTCTTCTTCTTTCTTCCAAAAAGAAGCCGTTTGCAAAGCATCTTCTTCTTTCTTTTCCTTCAAAAAAAAGTACGTTTCCTCAATGAGTTTTCCTTCCAATTTCCCCTCAAAGGATTATGTCTTTCCGAAAGAGGCGGAACTTAAAATACTTTGGAAACTTTTTGCTTCTCATTCTTCTTTTTTTGCAGTCAACATAGTACTTTTTCCCTATTTGTTATCAGCAAAAACCCWCTATCAGCACAAAATGCAAATCCCGTTTTTTTCGATTTCTAAAGTTTCAAGAAACCAGCAACCAGCATCTTGTTCCTTTTTGTCAGCTTTTGTTTATTGTTTACATTCGCCCGTTTTCCTTTATTTTTGGCTCGTATCGCCTTGTATCGCCCCGTCGAACCAAATTTCCTTTTTTTCATGCCAAGACAAATGCCGAAAAGTAATCTCTGTCCGGGAGAGGGCAACTATTTATCTCTCTTTCGTCTTTTTTTCTGCCGTTTTTACTTCCGATAGCATACATATACTTTCAGGTCGGACTCATTACTTCGTCTTGCTTCGGACTTCCATATACCAATATTTTAGGATAATATTTATATTTTTAAGATAATTTATATTATTTAAAGTGAGTTCCTTTCGGATGAAAACCGATATTCTTATTTTGACTCTTTATTTTCAGAATGAAAAAGCTGAAACGAAGACTGTCGGCGGCGTTCCGTCCGGGAAGCAACAACAACGTGAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>376 253 112 103 74 61 9 9 3</canonical_bands>
                <polymorphic_bands>376 262 112 103 74 61 9 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAGTTTTCCTTCCAATTTC</pcr_primer_p1>
		<pcr_primer_p2>AACAATAAACAAAAGCTGACAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGAGTTTTCCTTCCAATTTCCCCTCAAAGGATTATGTCTTTCCGAAAGAGGCGGAACTTAAAATACTTTGGAAACTTTTTGCTTCTCATTCTTCTTTTTTTGCAGTCAACATAGTACTTTTTCCCTATTTGTTATCAGCAAAAACCCACTATCAGCACAAAATGCAAATCCCGTTTTTTTCGATTTCTAAAGTTTCAAGAAACCAGCAACCAGCATCTTGTTCCTTTTTGTCAGCTTTTGTTTATTGTT</canonical_amplicon>
		<polymorphic_amplicon>ATGAGTTTTCCTTCCAATTTCCCCTCAAAGGATTATGTCTTTCCGAAAGAGGCGGAACTTAAAATACTTTGGAAACTTTTTGCTTCTCATTCTTCTTTTTTTGCAGTCAACATAGTACTTTTTCCCTATTTGTTATCAGCAAAAACCCWCTATCAGCACAAAATGCAAATCCCGTTTTTTTCGATTTCTAAAGTTTCAAGAAACCAGCAACCAGCATCTTGTTCCTTTTTGTCAGCTTTTGTTTATTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32763</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>29309</contig_pos>
        <strand>+</strand>
        <context>AAAGTTTCAA[A/G]AAACCAGCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTATCAGCACAAAATGCAAATCCCGTTTTTTTCGATTTCTAAAGTTTCAA</left_flank>
        <right_flank>AAACCAGCAACCAGCATCTTGTTCCTTTTTGTCAGCTTTTGTTTATTGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTCAAGTCTTACTCTGTATATCTGTTCATCCAATCTAGCTACTTCCGACACTTCTTCCACTCCCAAAAACTTGCATATCTCTCTCTTTGTTCCATTATCCTTACATCGCCCATAGAGCCACCCCGAAACTACTTCTCGCAGCTTTTTCCCTATAATTAGATGCTCCTGACGACCAAGTCTCGCTTCGTTAGGTGCTCCGAATGACTTGATTACATCTTCTTCTTCTTTCTTCCAAAAAGAAGCCGTTTGCAAAGCATCTTCTTCTTTCTTTTCCTTCAAAAAAAAGTACGTTTCCTCAATGAGTTTTCCTTCCAATTTCCCCTCAAAGGATTATGTCTTTCCGAAAGAGGCGGAACTTAAAATACTTTGGAAACTTTTTGCTTCTCATTCTTCTTTTTTTGCAGTCAACATAGTACTTTTTCCCTATTTGTTATCAGCAAAAACCCACTATCAGCACAAAATGCAAATCCCGTTTTTTTCGATTTCTAAAGTTTCAAGAAACCAGCAACCAGCATCTTGTTCCTTTTTGTCAGCTTTTGTTTATTGTTTACATTCGCCCGTTTTCCTTTATTTTTGGCTCGTATCGCCTTGTATCGCCCCGTCGAACCAAATTTCCTTTTTTTCATGCCAAGACAAATGCCGAAAAGTAATCTCTGTCCGGGAGAGGGCAACTATTTATCTCTCTTTCGTCTTTTTTTCTGCCGTTTTTACTTCCGATAGCATACATATACTTTCAGGTCGGACTCATTACTTCGTCTTGCTTCGGACTTCCATATACCAATATTTTAGGATAATATTTATATTTTTAAGATAATTTATATTATTTAAAGTGAGTTCCTTTCGGATGAAAACCGATATTCTTATTTTGACTCTTTATTTTCAGAATGAAAAAGCTGAAACGAAGACTGTCGGCGGCGTTCCGTCCGGGAAGCAACAACAACGTGAGCATCACCAGCTCTGGAGGCTCTTATTACGATTCAGATTGTGGTAGGTCAAAA</canonical>
            <polymorphic>TACTCAAGTCTTACTCTGTATATCTGTTCATCCAATCTAGCTACTTCCGACACTTCTTCCACTCCCAAAAACTTGCATATCTCTCTCTTTGTTCCATTATCCTTACATCGCCCATAGAGCCACCCCGAAACTACTTCTCGCAGCTTTTTCCCTATAATTAGATGCTCCTGACGACCAAGTCTCGCTTCGTTAGGTGCTCCGAATGACTTGATTACATCTTCTTCTTCTTTCTTCCAAAAAGAAGCCGTTTGCAAAGCATCTTCTTCTTTCTTTTCCTTCAAAAAAAAGTACGTTTCCTCAATGAGTTTTCCTTCCAATTTCCCCTCAAAGGATTATGTCTTTCCGAAAGAGGCGGAACTTAAAATACTTTGGAAACTTTTTGCTTCTCATTCTTCTTTTTTTGCAGTCAACATAGTACTTTTTCCCTATTTGTTATCAGCAAAAACCCACTATCAGCACAAAATGCAAATCCCGTTTTTTTCGATTTCTAAAGTTTCAARAAACCAGCAACCAGCATCTTGTTCCTTTTTGTCAGCTTTTGTTTATTGTTTACATTCGCCCGTTTTCCTTTATTTTTGGCTCGTATCGCCTTGTATCGCCCCGTCGAACCAAATTTCCTTTTTTTCATGCCAAGACAAATGCCGAAAAGTAATCTCTGTCCGGGAGAGGGCAACTATTTATCTCTCTTTCGTCTTTTTTTCTGCCGTTTTTACTTCCGATAGCATACATATACTTTCAGGTCGGACTCATTACTTCGTCTTGCTTCGGACTTCCATATACCAATATTTTAGGATAATATTTATATTTTTAAGATAATTTATATTATTTAAAGTGAGTTCCTTTCGGATGAAAACCGATATTCTTATTTTGACTCTTTATTTTCAGAATGAAAAAGCTGAAACGAAGACTGTCGGCGGCGTTCCGTCCGGGAAGCAACAACAACGTGAGCATCACCAGCTCTGGAGGCTCTTATTACGATTCAGATTGTGGTAGGTCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>463 330 167 40</canonical_bands>
                <polymorphic_bands>793 167 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTCCCCTCAAAGGATTAT</pcr_primer_p1>
		<pcr_primer_p2>GCGAATGTAAACAATAAACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AATTTCCCCTCAAAGGATTATGTCTTTCCGAAAGAGGCGGAACTTAAAATACTTTGGAAACTTTTTGCTTCTCATTCTTCTTTTTTTGCAGTCAACATAGTACTTTTTCCCTATTTGTTATCAGCAAAAACCCACTATCAGCACAAAATGCAAATCCCGTTTTTTTCGATTTCTAAAGTTTCAAGAAACCAGCAACCAGCATCTTGTTCCTTTTTGTCAGCTTTTGTTTATTGTTTACATTCGC</canonical_amplicon>
		<polymorphic_amplicon>AATTTCCCCTCAAAGGATTATGTCTTTCCGAAAGAGGCGGAACTTAAAATACTTTGGAAACTTTTTGCTTCTCATTCTTCTTTTTTTGCAGTCAACATAGTACTTTTTCCCTATTTGTTATCAGCAAAAACCCACTATCAGCACAAAATGCAAATCCCGTTTTTTTCGATTTCTAAAGTTTCAARAAACCAGCAACCAGCATCTTGTTCCTTTTTGTCAGCTTTTGTTTATTGTTTACATTCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32764</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>66356</contig_pos>
        <strand></strand>
        <context>accgtaacct[T/A]acatagtttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAATCTGTCGTTAGTGGCCGAAGGCACTACAACGACAACTACCGTAACCT</left_flank>
        <right_flank>ACATAGTTTTATTTTCCGGAACAATGACAGGAAATTCGACGAAGGACGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTGCAACTCACTGAATAATCAAGACCTGTGAAAAAGTTGACAATGACATTTGTGTTGAGTCCCTGATAGAATGCAACTTCACCCACAAACTCCTCCTTTTCTCGCGATTCTCGAGTTATAGCCATATTGGGATGCATCTGTAAAAATATCAGAATTCAATTTTCAAAACATCTCCAACTCACCCAATATACATTTTTATAGAGACCCGATTTATATTGTGGAATCACATCCAACCGAATTGTTTTTGGAGCGGGAGTCTCTGCCTCAGTCTTCTGCTGATTCTTCTTCTTCCCGCCTTTCTTCTTCGCTTTATTCCGGAAGACCGGTGGCGGCTCTTCGTCTGCCGACCTGGAATCTCTCATGTTTAAGAGAGCCCAATTGTACATCAACTATCGTTTCTACGTGTCAACCATCAAGTGAGTCTTTAATTGTTATTGTGGTACAAAAAATCTGTCGTTAGTGGCCGAAGGCACTACAACGACAACTACCGTAACCTTACATAGTTTTATTTTCCGGAACAATGACAGGAAATTCGACGAAGGACGAAACCGAGAAAATGAATACTAAAAATAAAAATATTTTTAGGTTACGGTAGTTTTCGCTGTGGGACCTTCTGATTCTTTTTACAAGGATAATATGTCACATACCATCTTGTTGTTAGATGACGATGTCGACGTTCATCAAAATGAATCATCGATTCACCACGTTCTCCCTGTGTGTTTTTTATAATGAAAAATTGCAAAGATGGAAAATTATGGAACCACCGTGTAAACGAGAATTTAAAGTTCACGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTT</canonical>
            <polymorphic>TTCTTGCAACTCACTGAATAATCAAGACCTGTGAAAAAGTTGACAATGACATTTGTGTTGAGTCCCTGATAGAATGCAACTTCACCCACAAACTCCTCCTTTTCTCGCGATTCTCGAGTTATAGCCATATTGGGATGCATCTGTAAAAATATCAGAATTCAATTTTCAAAACATCTCCAACTCACCCAATATACATTTTTATAGAGACCCGATTTATATTGTGGAATCACATCCAACCGAATTGTTTTTGGAGCGGGAGTCTCTGCCTCAGTCTTCTGCTGATTCTTCTTCTTCCCGCCTTTCTTCTTCGCTTTATTCCGGAAGACCGGTGGCGGCTCTTCGTCTGCCGACCTGGAATCTCTCATGTTTAAGAGAGCCCAATTGTACATCAACTATCGTTTCTACGTGTCAACCATCAAGTGAGTCTTTAATTGTTATTGTGGTACAAAAAATCTGTCGTTAGTGGCCGAAGGCACTACAACGACAACTACCGTAACCTWACATAGTTTTATTTTCCGGAACAATGACAGGAAATTCGACGAAGGACGAAACCGAGAAAATGAATACTAAAAATAAAAATATTTTTAGGTTACGGTAGTTTTCGCTGTGGGACCTTCTGATTCTTTTTACAAGGATAATATGTCACATACCATCTTGTTGTTAGATGACGATGTCGACGTTCATCAAAATGAATCATCGATTCACCACGTTCTCCCTGTGTGTTTTTTATAATGAAAAATTGCAAAGATGGAAAATTATGGAACCACCGTGTAAACGAGAATTTAAAGTTCACGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGTCTTTAATTGTTATTGTGGT</pcr_primer_p1>
		<pcr_primer_p2>TCATCTAACAACAAGATGGTATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGAGTCTTTAATTGTTATTGTGGTACAAAAAATCTGTCGTTAGTGGCCGAAGGCACTACAACGACAACTACCGTAACCTTACATAGTTTTATTTTCCGGAACAATGACAGGAAATTCGACGAAGGACGAAACCGAGAAAATGAATACTAAAAATAAAAATATTTTTAGGTTACGGTAGTTTTCGCTGTGGGACCTTCTGATTCTTTTTACAAGGATAATATGTCACATACCATCTTGTTGTTAGATGA</canonical_amplicon>
		<polymorphic_amplicon>TGAGTCTTTAATTGTTATTGTGGTACAAAAAATCTGTCGTTAGTGGCCGAAGGCACTACAACGACAACTACCGTAACCTWACATAGTTTTATTTTCCGGAACAATGACAGGAAATTCGACGAAGGACGAAACCGAGAAAATGAATACTAAAAATAAAAATATTTTTAGGTTACGGTAGTTTTCGCTGTGGGACCTTCTGATTCTTTTTACAAGGATAATATGTCACATACCATCTTGTTGTTAGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32765</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>66382</contig_pos>
        <strand></strand>
        <context>ccggaacaat[G/A]acaggaaatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTACAACGACAACTACCGTAACCTTACATAGTTTTATTTTCCGGAACAAT</left_flank>
        <right_flank>ACAGGAAATTCGACGAAGGACGAAACCGAGAAAATGAATACTAAAAATAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTGTGAAAAAGTTGACAATGACATTTGTGTTGAGTCCCTGATAGAATGCAACTTCACCCACAAACTCCTCCTTTTCTCGCGATTCTCGAGTTATAGCCATATTGGGATGCATCTGTAAAAATATCAGAATTCAATTTTCAAAACATCTCCAACTCACCCAATATACATTTTTATAGAGACCCGATTTATATTGTGGAATCACATCCAACCGAATTGTTTTTGGAGCGGGAGTCTCTGCCTCAGTCTTCTGCTGATTCTTCTTCTTCCCGCCTTTCTTCTTCGCTTTATTCCGGAAGACCGGTGGCGGCTCTTCGTCTGCCGACCTGGAATCTCTCATGTTTAAGAGAGCCCAATTGTACATCAACTATCGTTTCTACGTGTCAACCATCAAGTGAGTCTTTAATTGTTATTGTGGTACAAAAAATCTGTCGTTAGTGGCCGAAGGCACTACAACGACAACTACCGTAACCTTACATAGTTTTATTTTCCGGAACAATGACAGGAAATTCGACGAAGGACGAAACCGAGAAAATGAATACTAAAAATAAAAATATTTTTAGGTTACGGTAGTTTTCGCTGTGGGACCTTCTGATTCTTTTTACAAGGATAATATGTCACATACCATCTTGTTGTTAGATGACGATGTCGACGTTCATCAAAATGAATCATCGATTCACCACGTTCTCCCTGTGTGTTTTTTATAATGAAAAATTGCAAAGATGGAAAATTATGGAACCACCGTGTAAACGAGAATTTAAAGTTCACGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAG</canonical>
            <polymorphic>ACCTGTGAAAAAGTTGACAATGACATTTGTGTTGAGTCCCTGATAGAATGCAACTTCACCCACAAACTCCTCCTTTTCTCGCGATTCTCGAGTTATAGCCATATTGGGATGCATCTGTAAAAATATCAGAATTCAATTTTCAAAACATCTCCAACTCACCCAATATACATTTTTATAGAGACCCGATTTATATTGTGGAATCACATCCAACCGAATTGTTTTTGGAGCGGGAGTCTCTGCCTCAGTCTTCTGCTGATTCTTCTTCTTCCCGCCTTTCTTCTTCGCTTTATTCCGGAAGACCGGTGGCGGCTCTTCGTCTGCCGACCTGGAATCTCTCATGTTTAAGAGAGCCCAATTGTACATCAACTATCGTTTCTACGTGTCAACCATCAAGTGAGTCTTTAATTGTTATTGTGGTACAAAAAATCTGTCGTTAGTGGCCGAAGGCACTACAACGACAACTACCGTAACCTTACATAGTTTTATTTTCCGGAACAATRACAGGAAATTCGACGAAGGACGAAACCGAGAAAATGAATACTAAAAATAAAAATATTTTTAGGTTACGGTAGTTTTCGCTGTGGGACCTTCTGATTCTTTTTACAAGGATAATATGTCACATACCATCTTGTTGTTAGATGACGATGTCGACGTTCATCAAAATGAATCATCGATTCACCACGTTCTCCCTGTGTGTTTTTTATAATGAAAAATTGCAAAGATGGAAAATTATGGAACCACCGTGTAAACGAGAATTTAAAGTTCACGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGTCTTTAATTGTTATTGTGGT</pcr_primer_p1>
		<pcr_primer_p2>TCATCTAACAACAAGATGGTATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGAGTCTTTAATTGTTATTGTGGTACAAAAAATCTGTCGTTAGTGGCCGAAGGCACTACAACGACAACTACCGTAACCTTACATAGTTTTATTTTCCGGAACAATGACAGGAAATTCGACGAAGGACGAAACCGAGAAAATGAATACTAAAAATAAAAATATTTTTAGGTTACGGTAGTTTTCGCTGTGGGACCTTCTGATTCTTTTTACAAGGATAATATGTCACATACCATCTTGTTGTTAGATGA</canonical_amplicon>
		<polymorphic_amplicon>TGAGTCTTTAATTGTTATTGTGGTACAAAAAATCTGTCGTTAGTGGCCGAAGGCACTACAACGACAACTACCGTAACCTTACATAGTTTTATTTTCCGGAACAATRACAGGAAATTCGACGAAGGACGAAACCGAGAAAATGAATACTAAAAATAAAAATATTTTTAGGTTACGGTAGTTTTCGCTGTGGGACCTTCTGATTCTTTTTACAAGGATAATATGTCACATACCATCTTGTTGTTAGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32766</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>66718</contig_pos>
        <strand></strand>
        <context>tccccgtaac[G/C]aaatctayyg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAAC</left_flank>
        <right_flank>AAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGTTTAAGAGAGCCCAATTGTACATCAACTATCGTTTCTACGTGTCAACCATCAAGTGAGTCTTTAATTGTTATTGTGGTACAAAAAATCTGTCGTTAGTGGCCGAAGGCACTACAACGACAACTACCGTAACCTTACATAGTTTTATTTTCCGGAACAATGACAGGAAATTCGACGAAGGACGAAACCGAGAAAATGAATACTAAAAATAAAAATATTTTTAGGTTACGGTAGTTTTCGCTGTGGGACCTTCTGATTCTTTTTACAAGGATAATATGTCACATACCATCTTGTTGTTAGATGACGATGTCGACGTTCATCAAAATGAATCATCGATTCACCACGTTCTCCCTGTGTGTTTTTTATAATGAAAAATTGCAAAGATGGAAAATTATGGAACCACCGTGTAAACGAGAATTTAAAGTTCACGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGGAGATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGATTGTAAATCAGGTGACGATGAGAGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATATTTGGAAGTTCTATTTCGAGCTAAATGGGAGCCACTTTGTGCGGATCATTTGGATGGGAATAGAGCAAATTTGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATTTTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAACAAAT</canonical>
            <polymorphic>CATGTTTAAGAGAGCCCAATTGTACATCAACTATCGTTTCTACGTGTCAACCATCAAGTGAGTCTTTAATTGTTATTGTGGTACAAAAAATCTGTCGTTAGTGGCCGAAGGCACTACAACGACAACTACCGTAACCTTACATAGTTTTATTTTCCGGAACAATGACAGGAAATTCGACGAAGGACGAAACCGAGAAAATGAATACTAAAAATAAAAATATTTTTAGGTTACGGTAGTTTTCGCTGTGGGACCTTCTGATTCTTTTTACAAGGATAATATGTCACATACCATCTTGTTGTTAGATGACGATGTCGACGTTCATCAAAATGAATCATCGATTCACCACGTTCTCCCTGTGTGTTTTTTATAATGAAAAATTGCAAAGATGGAAAATTATGGAACCACCGTGTAAACGAGAATTTAAAGTTCACGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACSAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGGAGATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGATTGTAAATCAGGTGACGATGAGAGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATATTTGGAAGTTCTATTTCGAGCTAAATGGGAGCCACTTTGTGCGGATCATTTGGATGGGAATAGAGCAAATTTGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATTTTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAACAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCGAATCTATTGCTTGTAT</pcr_primer_p1>
		<pcr_primer_p2>CGAGAACACCTGTGATGTAAC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCG</canonical_amplicon>
		<polymorphic_amplicon>CGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACSAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32767</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>66726</contig_pos>
        <strand></strand>
        <context>acsaaatcta[C/T]ygtaacctaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTA</left_flank>
        <right_flank>CGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGAGCCCAATTGTACATCAACTATCGTTTCTACGTGTCAACCATCAAGTGAGTCTTTAATTGTTATTGTGGTACAAAAAATCTGTCGTTAGTGGCCGAAGGCACTACAACGACAACTACCGTAACCTTACATAGTTTTATTTTCCGGAACAATGACAGGAAATTCGACGAAGGACGAAACCGAGAAAATGAATACTAAAAATAAAAATATTTTTAGGTTACGGTAGTTTTCGCTGTGGGACCTTCTGATTCTTTTTACAAGGATAATATGTCACATACCATCTTGTTGTTAGATGACGATGTCGACGTTCATCAAAATGAATCATCGATTCACCACGTTCTCCCTGTGTGTTTTTTATAATGAAAAATTGCAAAGATGGAAAATTATGGAACCACCGTGTAAACGAGAATTTAAAGTTCACGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGGAGATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGATTGTAAATCAGGTGACGATGAGAGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATATTTGGAAGTTCTATTTCGAGCTAAATGGGAGCCACTTTGTGCGGATCATTTGGATGGGAATAGAGCAAATTTGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATTTTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAACAAATATCTCTAT</canonical>
            <polymorphic>AGAGAGCCCAATTGTACATCAACTATCGTTTCTACGTGTCAACCATCAAGTGAGTCTTTAATTGTTATTGTGGTACAAAAAATCTGTCGTTAGTGGCCGAAGGCACTACAACGACAACTACCGTAACCTTACATAGTTTTATTTTCCGGAACAATGACAGGAAATTCGACGAAGGACGAAACCGAGAAAATGAATACTAAAAATAAAAATATTTTTAGGTTACGGTAGTTTTCGCTGTGGGACCTTCTGATTCTTTTTACAAGGATAATATGTCACATACCATCTTGTTGTTAGATGACGATGTCGACGTTCATCAAAATGAATCATCGATTCACCACGTTCTCCCTGTGTGTTTTTTATAATGAAAAATTGCAAAGATGGAAAATTATGGAACCACCGTGTAAACGAGAATTTAAAGTTCACGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTAYCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGGAGATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGATTGTAAATCAGGTGACGATGAGAGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATATTTGGAAGTTCTATTTCGAGCTAAATGGGAGCCACTTTGTGCGGATCATTTGGATGGGAATAGAGCAAATTTGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATTTTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAACAAATATCTCTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>499 174 122 102 82 21</canonical_bands>
                <polymorphic_bands>520 174 122 102 82</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGCGAATCTATTGCTTGTAT</pcr_primer_p1>
		<pcr_primer_p2>CGAGAACACCTGTGATGTAAC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCG</canonical_amplicon>
		<polymorphic_amplicon>CGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTAYCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32768</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>66727</contig_pos>
        <strand></strand>
        <context>csaaatctay[C/T]gtaacctaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTAC</left_flank>
        <right_flank>GTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAGCCCAATTGTACATCAACTATCGTTTCTACGTGTCAACCATCAAGTGAGTCTTTAATTGTTATTGTGGTACAAAAAATCTGTCGTTAGTGGCCGAAGGCACTACAACGACAACTACCGTAACCTTACATAGTTTTATTTTCCGGAACAATGACAGGAAATTCGACGAAGGACGAAACCGAGAAAATGAATACTAAAAATAAAAATATTTTTAGGTTACGGTAGTTTTCGCTGTGGGACCTTCTGATTCTTTTTACAAGGATAATATGTCACATACCATCTTGTTGTTAGATGACGATGTCGACGTTCATCAAAATGAATCATCGATTCACCACGTTCTCCCTGTGTGTTTTTTATAATGAAAAATTGCAAAGATGGAAAATTATGGAACCACCGTGTAAACGAGAATTTAAAGTTCACGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGGAGATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGATTGTAAATCAGGTGACGATGAGAGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATATTTGGAAGTTCTATTTCGAGCTAAATGGGAGCCACTTTGTGCGGATCATTTGGATGGGAATAGAGCAAATTTGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATTTTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAACAAATATCTCTATT</canonical>
            <polymorphic>GAGAGCCCAATTGTACATCAACTATCGTTTCTACGTGTCAACCATCAAGTGAGTCTTTAATTGTTATTGTGGTACAAAAAATCTGTCGTTAGTGGCCGAAGGCACTACAACGACAACTACCGTAACCTTACATAGTTTTATTTTCCGGAACAATGACAGGAAATTCGACGAAGGACGAAACCGAGAAAATGAATACTAAAAATAAAAATATTTTTAGGTTACGGTAGTTTTCGCTGTGGGACCTTCTGATTCTTTTTACAAGGATAATATGTCACATACCATCTTGTTGTTAGATGACGATGTCGACGTTCATCAAAATGAATCATCGATTCACCACGTTCTCCCTGTGTGTTTTTTATAATGAAAAATTGCAAAGATGGAAAATTATGGAACCACCGTGTAAACGAGAATTTAAAGTTCACGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACYGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGGAGATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGATTGTAAATCAGGTGACGATGAGAGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATATTTGGAAGTTCTATTTCGAGCTAAATGGGAGCCACTTTGTGCGGATCATTTGGATGGGAATAGAGCAAATTTGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATTTTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAACAAATATCTCTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCGAATCTATTGCTTGTAT</pcr_primer_p1>
		<pcr_primer_p2>CGAGAACACCTGTGATGTAAC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCG</canonical_amplicon>
		<polymorphic_amplicon>CGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACYGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32769</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>66783</contig_pos>
        <strand></strand>
        <context>ctagaaaatt[G/T]ccgaaaatcg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATT</left_flank>
        <right_flank>CCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAATTGTTATTGTGGTACAAAAAATCTGTCGTTAGTGGCCGAAGGCACTACAACGACAACTACCGTAACCTTACATAGTTTTATTTTCCGGAACAATGACAGGAAATTCGACGAAGGACGAAACCGAGAAAATGAATACTAAAAATAAAAATATTTTTAGGTTACGGTAGTTTTCGCTGTGGGACCTTCTGATTCTTTTTACAAGGATAATATGTCACATACCATCTTGTTGTTAGATGACGATGTCGACGTTCATCAAAATGAATCATCGATTCACCACGTTCTCCCTGTGTGTTTTTTATAATGAAAAATTGCAAAGATGGAAAATTATGGAACCACCGTGTAAACGAGAATTTAAAGTTCACGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGGAGATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGATTGTAAATCAGGTGACGATGAGAGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATATTTGGAAGTTCTATTTCGAGCTAAATGGGAGCCACTTTGTGCGGATCATTTGGATGGGAATAGAGCAAATTTGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATTTTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAACAAATATCTCTATTTCCTCTGGATTCGACGTTATCTGTGGTTCTGAATGCATTCTCCGTAGATCATCTTC</canonical>
            <polymorphic>TTAATTGTTATTGTGGTACAAAAAATCTGTCGTTAGTGGCCGAAGGCACTACAACGACAACTACCGTAACCTTACATAGTTTTATTTTCCGGAACAATGACAGGAAATTCGACGAAGGACGAAACCGAGAAAATGAATACTAAAAATAAAAATATTTTTAGGTTACGGTAGTTTTCGCTGTGGGACCTTCTGATTCTTTTTACAAGGATAATATGTCACATACCATCTTGTTGTTAGATGACGATGTCGACGTTCATCAAAATGAATCATCGATTCACCACGTTCTCCCTGTGTGTTTTTTATAATGAAAAATTGCAAAGATGGAAAATTATGGAACCACCGTGTAAACGAGAATTTAAAGTTCACGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTKCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGGAGATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGATTGTAAATCAGGTGACGATGAGAGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATATTTGGAAGTTCTATTTCGAGCTAAATGGGAGCCACTTTGTGCGGATCATTTGGATGGGAATAGAGCAAATTTGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATTTTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAACAAATATCTCTATTTCCTCTGGATTCGACGTTATCTGTGGTTCTGAATGCATTCTCCGTAGATCATCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCGAATCTATTGCTTGTAT</pcr_primer_p1>
		<pcr_primer_p2>CGAGAACACCTGTGATGTAAC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCG</canonical_amplicon>
		<polymorphic_amplicon>CGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTKCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32770</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>66864</contig_pos>
        <strand></strand>
        <context>ctttcatggc[T/C]cygatttttg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGC</left_flank>
        <right_flank>CTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATTTTCCGGAACAATGACAGGAAATTCGACGAAGGACGAAACCGAGAAAATGAATACTAAAAATAAAAATATTTTTAGGTTACGGTAGTTTTCGCTGTGGGACCTTCTGATTCTTTTTACAAGGATAATATGTCACATACCATCTTGTTGTTAGATGACGATGTCGACGTTCATCAAAATGAATCATCGATTCACCACGTTCTCCCTGTGTGTTTTTTATAATGAAAAATTGCAAAGATGGAAAATTATGGAACCACCGTGTAAACGAGAATTTAAAGTTCACGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGGAGATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGATTGTAAATCAGGTGACGATGAGAGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATATTTGGAAGTTCTATTTCGAGCTAAATGGGAGCCACTTTGTGCGGATCATTTGGATGGGAATAGAGCAAATTTGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATTTTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAACAAATATCTCTATTTCCTCTGGATTCGACGTTATCTGTGGTTCTGAATGCATTCTCCGTAGATCATCTTCTTGTACCCGTCTAGCCAGAATCTCATGTATTTCTCAAAATGGACTAGCTTCCGTTTCTCAGTGCGGTCATCGTTATGTCGA</canonical>
            <polymorphic>TTATTTTCCGGAACAATGACAGGAAATTCGACGAAGGACGAAACCGAGAAAATGAATACTAAAAATAAAAATATTTTTAGGTTACGGTAGTTTTCGCTGTGGGACCTTCTGATTCTTTTTACAAGGATAATATGTCACATACCATCTTGTTGTTAGATGACGATGTCGACGTTCATCAAAATGAATCATCGATTCACCACGTTCTCCCTGTGTGTTTTTTATAATGAAAAATTGCAAAGATGGAAAATTATGGAACCACCGTGTAAACGAGAATTTAAAGTTCACGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCYCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGGAGATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGATTGTAAATCAGGTGACGATGAGAGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATATTTGGAAGTTCTATTTCGAGCTAAATGGGAGCCACTTTGTGCGGATCATTTGGATGGGAATAGAGCAAATTTGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATTTTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAACAAATATCTCTATTTCCTCTGGATTCGACGTTATCTGTGGTTCTGAATGCATTCTCCGTAGATCATCTTCTTGTACCCGTCTAGCCAGAATCTCATGTATTTCTCAAAATGGACTAGCTTCCGTTTCTCAGTGCGGTCATCGTTATGTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>336 156 128 127 87 53 34 33 29 11 6</canonical_bands>
                <polymorphic_bands>336 156 128 127 87 82 34 33 11 6</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>371 154 152 110 107 68 21 17</canonical_bands>
                <polymorphic_bands>371 175 152 110 107 68 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGCGAATCTATTGCTTGTA</pcr_primer_p1>
		<pcr_primer_p2>TCTATAGATCCATCGCAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>326</pcr_amplicon_size>
		<canonical_amplicon>ACGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGGAGATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGA</canonical_amplicon>
		<polymorphic_amplicon>ACGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCYCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGGAGATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32771</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>66866</contig_pos>
        <strand></strand>
        <context>ttcatggcyc[T/C]gatttttgca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTC</left_flank>
        <right_flank>GATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGC</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTCCGGAACAATGACAGGAAATTCGACGAAGGACGAAACCGAGAAAATGAATACTAAAAATAAAAATATTTTTAGGTTACGGTAGTTTTCGCTGTGGGACCTTCTGATTCTTTTTACAAGGATAATATGTCACATACCATCTTGTTGTTAGATGACGATGTCGACGTTCATCAAAATGAATCATCGATTCACCACGTTCTCCCTGTGTGTTTTTTATAATGAAAAATTGCAAAGATGGAAAATTATGGAACCACCGTGTAAACGAGAATTTAAAGTTCACGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGGAGATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGATTGTAAATCAGGTGACGATGAGAGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATATTTGGAAGTTCTATTTCGAGCTAAATGGGAGCCACTTTGTGCGGATCATTTGGATGGGAATAGAGCAAATTTGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATTTTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAACAAATATCTCTATTTCCTCTGGATTCGACGTTATCTGTGGTTCTGAATGCATTCTCCGTAGATCATCTTCTTGTACCCGTCTAGCCAGAATCTCATGTATTTCTCAAAATGGACTAGCTTCCGTTTCTCAGTGCGGTCATCGTTATGTCGAAG</canonical>
            <polymorphic>ATTTTCCGGAACAATGACAGGAAATTCGACGAAGGACGAAACCGAGAAAATGAATACTAAAAATAAAAATATTTTTAGGTTACGGTAGTTTTCGCTGTGGGACCTTCTGATTCTTTTTACAAGGATAATATGTCACATACCATCTTGTTGTTAGATGACGATGTCGACGTTCATCAAAATGAATCATCGATTCACCACGTTCTCCCTGTGTGTTTTTTATAATGAAAAATTGCAAAGATGGAAAATTATGGAACCACCGTGTAAACGAGAATTTAAAGTTCACGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCYGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGGAGATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGATTGTAAATCAGGTGACGATGAGAGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATATTTGGAAGTTCTATTTCGAGCTAAATGGGAGCCACTTTGTGCGGATCATTTGGATGGGAATAGAGCAAATTTGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATTTTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAACAAATATCTCTATTTCCTCTGGATTCGACGTTATCTGTGGTTCTGAATGCATTCTCCGTAGATCATCTTCTTGTACCCGTCTAGCCAGAATCTCATGTATTTCTCAAAATGGACTAGCTTCCGTTTCTCAGTGCGGTCATCGTTATGTCGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGCGAATCTATTGCTTGTA</pcr_primer_p1>
		<pcr_primer_p2>TCTATAGATCCATCGCAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>326</pcr_amplicon_size>
		<canonical_amplicon>ACGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGGAGATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGA</canonical_amplicon>
		<polymorphic_amplicon>ACGCGAATCTATTGCTTGTATAAAACATAGAAGAAAAAACTATGTGGGCGTGGCTAACGGTCCCCGTAACGAAATCTACCGTAACCTAAAATAATTTCGGCAATTTTTGTGTTGAAAATCAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCYGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGGAGATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32772</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>67266</contig_pos>
        <strand>+</strand>
        <context>CTGAATGCAT[G/T]CTCCGTAGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATATCTCTATTTCCTCTGGATTCGACGTTATCTGTGGTTCTGAATGCAT</left_flank>
        <right_flank>CTCCGTAGATCATCTTCTTGTACCCGTCTAGCCAGAATCTCATGTATTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGGAGATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGATTGTAAATCAGGTGACGATGAGAGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATATTTGGAAGTTCTATTTCGAGCTAAATGGGAGCCACTTTGTGCGGATCATTTGGATGGGAATAGAGCAAATTTGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATTTTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAACAAATATCTCTATTTCCTCTGGATTCGACGTTATCTGTGGTTCTGAATGCATTCTCCGTAGATCATCTTCTTGTACCCGTCTAGCCAGAATCTCATGTATTTCTCAAAATGGACTAGCTTCCGTTTCTCAGTGCGGTCATCGTTATGTCGAAGTCAATGCTCGGGATGCAGCTAGATCTCGGATCGCAAGAGTTGTCGGAGGGTTCGAAACAGTTCCAGGGGCATTTCCATGGACAGCTGCATTAAGAAATAAGGAAGTGGGTTAAAAATTAAGGATAAATGATTTGAAGCTTGAAAAGTTTCAGACAAAAGCCCACCATTGTGGAGCATCGATTCTTGATCGAACTCATTTGATAACAGCTGCGCATTGCTTTGAGTAAGATTAAGACCAGTTAGCAGTTATATTAACTGAATATTTTCAGAGAAGATGAAAGAGTAACCTCTTATGAAGTGGTTGTTGGAAATTGGGATAATAACAAAACAGATGGAAATGAACAAGTGTTCAATTTACAGAGGATTAACTATTATCCACTTTACAAGGGTATAATTAAAT</canonical>
            <polymorphic>CAAAGTCTAGAAAATTGCCGAAAATCGAGAAAAAAAGTATTTTCTAACTTCGGTATTGCGGCCATGGCCGCTGCCATCAGATTTTCTCTTTCATGGCTCTGATTTTTGCACAACAGCGTTACATCACAGGTGTTCTCGTTGCCAAGAAGCTGCATGTGGAGATGGATCTTGTATCAGGTCCCGTCAACTTTGCGATGGATCTATAGATTGTAAATCAGGTGACGATGAGAGTGATTGTACGGCAAGATCCTTCCGATTGACGAATGGATCAGACACTCGTGGATATTTGGAAGTTCTATTTCGAGCTAAATGGGAGCCACTTTGTGCGGATCATTTGGATGGGAATAGAGCAAATTTGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATTTTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAACAAATATCTCTATTTCCTCTGGATTCGACGTTATCTGTGGTTCTGAATGCATKCTCCGTAGATCATCTTCTTGTACCCGTCTAGCCAGAATCTCATGTATTTCTCAAAATGGACTAGCTTCCGTTTCTCAGTGCGGTCATCGTTATGTCGAAGTCAATGCTCGGGATGCAGCTAGATCTCGGATCGCAAGAGTTGTCGGAGGGTTCGAAACAGTTCCAGGGGCATTTCCATGGACAGCTGCATTAAGAAATAAGGAAGTGGGTTAAAAATTAAGGATAAATGATTTGAAGCTTGAAAAGTTTCAGACAAAAGCCCACCATTGTGGAGCATCGATTCTTGATCGAACTCATTTGATAACAGCTGCGCATTGCTTTGAGTAAGATTAAGACCAGTTAGCAGTTATATTAACTGAATATTTTCAGAGAAGATGAAAGAGTAACCTCTTATGAAGTGGTTGTTGGAAATTGGGATAATAACAAAACAGATGGAAATGAACAAGTGTTCAATTTACAGAGGATTAACTATTATCCACTTTACAAGGGTATAATTAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>496 162 138 117 87</canonical_bands>
                <polymorphic_bands>658 138 117 87</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCATTTGGATGGGAATAGAG</pcr_primer_p1>
		<pcr_primer_p2>ACTGAGAAACGGAAGCTAGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCATTTGGATGGGAATAGAGCAAATTTGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATTTTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAACAAATATCTCTATTTCCTCTGGATTCGACGTTATCTGTGGTTCTGAATGCATTCTCCGTAGATCATCTTCTTGTACCCGTCTAGCCAGAATCTCATGTATTTCTCAAAATGGACTAGCTTCCGTTTCTCAGT</canonical_amplicon>
		<polymorphic_amplicon>ATCATTTGGATGGGAATAGAGCAAATTTGATATGTAACGACATGAGATTGGGGTATGAAAAAGTTGATTTTCAGCTCTTGATAATATGATTTCAGAGAGCATGGGTCTCTTCTCTCAACAAATATCTCTATTTCCTCTGGATTCGACGTTATCTGTGGTTCTGAATGCATKCTCCGTAGATCATCTTCTTGTACCCGTCTAGCCAGAATCTCATGTATTTCTCAAAATGGACTAGCTTCCGTTTCTCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32773</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>89057</contig_pos>
        <strand>+</strand>
        <context>TTTGAATTCC[C/T]AAATTGAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTTTGGCTTCTTTTTTCTCATAACTTTTCCGAATTCTGATTTGAATTCC</left_flank>
        <right_flank>AAATTGAATTTTTGCAGATAAAATCCCAAGTTGATCTCATTAATTTCGCA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGCTTGACTGAGTATCTTCTAAGGTGTCGTCACCACTTCTCATGTAGAGAATCCATTAGATTGGCGCATTCGATTTCCCGTTCGGGTGCCCGCCCATACCTTCAACTGCTGCTGATCTTTCACGTGTCCAGCAAAAACCGCCCATTTCCGCATAAGTTGTGACCATTTATCCGGGCACCCCAGCCGCCCAGAAGCCAACCAAATCGCATTACAAAGACCCCAATAGTGGGGACATTTGCTCCGCCCCTTGCGCCGTGTCTTCTTGAGAACTCGATTTGTATACTGCTTTTTTCGTTTCTCAGTTACTTGAAACCAGTGTTTTAATCTAGCACATATTTTGATTTTTTAGACATCTTCTATGGAATGCCGCCAGTATACGAACCCACAGCGACGACAACATCAGCTGCGTCGGTGTGGCCAATTGGAATTCCGCAGGTTTAATATTTACCTTTGGCTTCTTTTTTCTCATAACTTTTCCGAATTCTGATTTGAATTCCCAAATTGAATTTTTGCAGATAAAATCCCAAGTTGATCTCATTAATTTCGCACGAGAAATTTTCTCAACACAACCGACATCAACGTCGTCGTCCGTCGTTCCTCGCGATATCCAGAATTTGAACCCGATCGTTGGTTCGTTGGCCTCCGGAAAGTCGCCGACCGCAATAACCGCCATTGCGGCTACTGCCGCAAACATGACTCCTCAAATCGGTGGGTTACGGTAGATTGTTATTGTCAAAGATTTTGGGGGTGCAAATAAAAATAACCGCCAAGACGATTGTGTAAACAACAAGAATCCGACAAAATTAACAAAAATGTCTCCGTTTCCAGGAGGCCTCACCTCGCTCGGCTCCCTCACATCGATTCCAGCCGAACTGTTGCTCCAATTAAGCAGACTGGATAATATCAATCTTCTGCCGTAAGTCTTTATTAATCCTCCTCTGTATAATTCTCTTCGTCTCGTACATTCTTTCTTGGAATCCGGGCTACATCAGGGTCCA</canonical>
            <polymorphic>CTGGCTTGACTGAGTATCTTCTAAGGTGTCGTCACCACTTCTCATGTAGAGAATCCATTAGATTGGCGCATTCGATTTCCCGTTCGGGTGCCCGCCCATACCTTCAACTGCTGCTGATCTTTCACGTGTCCAGCAAAAACCGCCCATTTCCGCATAAGTTGTGACCATTTATCCGGGCACCCCAGCCGCCCAGAAGCCAACCAAATCGCATTACAAAGACCCCAATAGTGGGGACATTTGCTCCGCCCCTTGCGCCGTGTCTTCTTGAGAACTCGATTTGTATACTGCTTTTTTCGTTTCTCAGTTACTTGAAACCAGTGTTTTAATCTAGCACATATTTTGATTTTTTAGACATCTTCTATGGAATGCCGCCAGTATACGAACCCACAGCGACGACAACATCAGCTGCGTCGGTGTGGCCAATTGGAATTCCGCAGGTTTAATATTTACCTTTGGCTTCTTTTTTCTCATAACTTTTCCGAATTCTGATTTGAATTCCYAAATTGAATTTTTGCAGATAAAATCCCAAGTTGATCTCATTAATTTCGCACGAGAAATTTTCTCAACACAACCGACATCAACGTCGTCGTCCGTCGTTCCTCGCGATATCCAGAATTTGAACCCGATCGTTGGTTCGTTGGCCTCCGGAAAGTCGCCGACCGCAATAACCGCCATTGCGGCTACTGCCGCAAACATGACTCCTCAAATCGGTGGGTTACGGTAGATTGTTATTGTCAAAGATTTTGGGGGTGCAAATAAAAATAACCGCCAAGACGATTGTGTAAACAACAAGAATCCGACAAAATTAACAAAAATGTCTCCGTTTCCAGGAGGCCTCACCTCGCTCGGCTCCCTCACATCGATTCCAGCCGAACTGTTGCTCCAATTAAGCAGACTGGATAATATCAATCTTCTGCCGTAAGTCTTTATTAATCCTCCTCTGTATAATTCTCTTCGTCTCGTACATTCTTTCTTGGAATCCGGGCTACATCAGGGTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAACCAGTGTTTTAATCTAGC</pcr_primer_p1>
		<pcr_primer_p2>TCGTGCGAAATTAATGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TGAAACCAGTGTTTTAATCTAGCACATATTTTGATTTTTTAGACATCTTCTATGGAATGCCGCCAGTATACGAACCCACAGCGACGACAACATCAGCTGCGTCGGTGTGGCCAATTGGAATTCCGCAGGTTTAATATTTACCTTTGGCTTCTTTTTTCTCATAACTTTTCCGAATTCTGATTTGAATTCCCAAATTGAATTTTTGCAGATAAAATCCCAAGTTGATCTCATTAATTTCGCACGA</canonical_amplicon>
		<polymorphic_amplicon>TGAAACCAGTGTTTTAATCTAGCACATATTTTGATTTTTTAGACATCTTCTATGGAATGCCGCCAGTATACGAACCCACAGCGACGACAACATCAGCTGCGTCGGTGTGGCCAATTGGAATTCCGCAGGTTTAATATTTACCTTTGGCTTCTTTTTTCTCATAACTTTTCCGAATTCTGATTTGAATTCCYAAATTGAATTTTTGCAGATAAAATCCCAAGTTGATCTCATTAATTTCGCACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32774</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>89949</contig_pos>
        <strand>+</strand>
        <context>AACAAAGATY[C/T]GYYTGTTGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTATGTCGAGTTAGAGGAAATGCGCAAAAGAGAGCATTGAAACAAAGATC</left_flank>
        <right_flank>GTATGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAAAAGAAGGAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGACTGGATAATATCAATCTTCTGCCGTAAGTCTTTATTAATCCTCCTCTGTATAATTCTCTTCGTCTCGTACATTCTTTCTTGGAATCCGGGCTACATCAGGGTCCAGACATGTGCTTTGATTTCTGACAACGTCTGCACTTTTCCACCTCTGATTTCTGCCCTAGCAATCAAAATGAGCTCTGAGTAACCAGGTTCTGTGTAGTGTCTCAAAATTAATCAAGTGGATACGTGCTCCTTCTTTAGTTCGCCTACGGCTGAGTAACCAGGTTCTGTGCTTCTTGGAATTAAGCTAGTGTTTTTCTATATGAGTTCATAATACAAACTAAAGAAGCTAAACGTCTGAAAATCAAAGAATGAAAATGCAGGCTCCTTTGTTAATGTATTTCGTTATGAGTGTGTTGCCTTGGCTTCAGATATATAATACGACTTCTTCTGCTTCTTCGTGTCTATGTCGAGTTAGAGGAAATGCGCAAAAGAGAGCATTGAAACAAAGATCCGTATGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAAAAGAAGGAATGTGTGAGAGAGACGGAAAGGTGCAAAGTGCGTTTTGGCTCTCCCAGGCTTTTCATGAAGAAAATAGCACTTTCGATTTTTAAAGATTGCAGTTTATGAAGAATCGGGAATGGAACAAGATTTACATATTTTAAAAAAACAGTGTGGTATTCGTTTCAAGGGAATACTACAGTACTCCACAGTTATGATATTTAGATTACGCCGATATTTAGATTAGCGAAATGAACGGTTGAAGTCCTTCATGCTTAAACATCACTGCTTTTTCGGGCTTTCCTTTCGACCAACGGAACAACTAAAGAATCTCCCTCGAGGTGATGACAGATGCTCTCCTCATCAAAATAAACCGGAGGATAATGAGGGAAAATAAGTAGAAGGGCGGTGTCCTCCGCCCCGGAAAATGGTTTATTATTTCCTCAAGAAGCTTCCCTCTTTCATTTTGTTCCGAGTATTTG</canonical>
            <polymorphic>AGACTGGATAATATCAATCTTCTGCCGTAAGTCTTTATTAATCCTCCTCTGTATAATTCTCTTCGTCTCGTACATTCTTTCTTGGAATCCGGGCTACATCAGGGTCCAGACATGTGCTTTGATTTCTGACAACGTCTGCACTTTTCCACCTCTGATTTCTGCCCTAGCAATCAAAATGAGCTCTGAGTAACCAGGTTCTGTGTAGTGTCTCAAAATTAATCAAGTGGATACGTGCTCCTTCTTTAGTTCGCCTACGGCTGAGTAACCAGGTTCTGTGCTTCTTGGAATTAAGCTAGTGTTTTTCTATATGAGTTCATAATACAAACTAAAGAAGCTAAACGTCTGAAAATCAAAGAATGAAAATGCAGGCTCCTTTGTTAATGTATTTCGTTATGAGTGTGTTGCCTTGGCTTCAGATATATAATACGACTTCTTCTGCTTCTTCGTGTCTATGTCGAGTTAGAGGAAATGCGCAAAAGAGAGCATTGAAACAAAGATCYGTATGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAAAAGAAGGAATGTGTGAGAGAGACGGAAAGGTGCAAAGTGCGTTTTGGCTCTCCCAGGCTTTTCATGAAGAAAATAGCACTTTCGATTTTTAAAGATTGCAGTTTATGAAGAATCGGGAATGGAACAAGATTTACATATTTTAAAAAAACAGTGTGGTATTCGTTTCAAGGGAATACTACAGTACTCCACAGTTATGATATTTAGATTACGCCGATATTTAGATTAGCGAAATGAACGGTTGAAGTCCTTCATGCTTAAACATCACTGCTTTTTCGGGCTTTCCTTTCGACCAACGGAACAACTAAAGAATCTCCCTCGAGGTGATGACAGATGCTCTCCTCATCAAAATAAACCGGAGGATAATGAGGGAAAATAAGTAGAAGGGCGGTGTCCTCCGCCCCGGAAAATGGTTTATTATTTCCTCAAGAAGCTTCCCTCTTTCATTTTGTTCCGAGTATTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCTTGGCTTCAGATATATAATAC</pcr_primer_p1>
		<pcr_primer_p2>ATTCTTCATAAACTGCAATCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCCTTGGCTTCAGATATATAATACGACTTCTTCTGCTTCTTCGTGTCTATGTCGAGTTAGAGGAAATGCGCAAAAGAGAGCATTGAAACAAAGATCCGTATGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAAAAGAAGGAATGTGTGAGAGAGACGGAAAGGTGCAAAGTGCGTTTTGGCTCTCCCAGGCTTTTCATGAAGAAAATAGCACTTTCGATTTTTAAAGATTGCAGTTTATGAAGAAT</canonical_amplicon>
		<polymorphic_amplicon>GCCTTGGCTTCAGATATATAATACGACTTCTTCTGCTTCTTCGTGTCTATGTCGAGTTAGAGGAAATGCGCAAAAGAGAGCATTGAAACAAAGATCYGTATGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAAAAGAAGGAATGTGTGAGAGAGACGGAAAGGTGCAAAGTGCGTTTTGGCTCTCCCAGGCTTTTCATGAAGAAAATAGCACTTTCGATTTTTAAAGATTGCAGTTTATGAAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32775</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>89952</contig_pos>
        <strand>+</strand>
        <context>AAAGATYYGY[C/T]TGTTGCATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTCGAGTTAGAGGAAATGCGCAAAAGAGAGCATTGAAACAAAGATCCGT</left_flank>
        <right_flank>TGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAAAAGAAGGAATGTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGATAATATCAATCTTCTGCCGTAAGTCTTTATTAATCCTCCTCTGTATAATTCTCTTCGTCTCGTACATTCTTTCTTGGAATCCGGGCTACATCAGGGTCCAGACATGTGCTTTGATTTCTGACAACGTCTGCACTTTTCCACCTCTGATTTCTGCCCTAGCAATCAAAATGAGCTCTGAGTAACCAGGTTCTGTGTAGTGTCTCAAAATTAATCAAGTGGATACGTGCTCCTTCTTTAGTTCGCCTACGGCTGAGTAACCAGGTTCTGTGCTTCTTGGAATTAAGCTAGTGTTTTTCTATATGAGTTCATAATACAAACTAAAGAAGCTAAACGTCTGAAAATCAAAGAATGAAAATGCAGGCTCCTTTGTTAATGTATTTCGTTATGAGTGTGTTGCCTTGGCTTCAGATATATAATACGACTTCTTCTGCTTCTTCGTGTCTATGTCGAGTTAGAGGAAATGCGCAAAAGAGAGCATTGAAACAAAGATCCGTATGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAAAAGAAGGAATGTGTGAGAGAGACGGAAAGGTGCAAAGTGCGTTTTGGCTCTCCCAGGCTTTTCATGAAGAAAATAGCACTTTCGATTTTTAAAGATTGCAGTTTATGAAGAATCGGGAATGGAACAAGATTTACATATTTTAAAAAAACAGTGTGGTATTCGTTTCAAGGGAATACTACAGTACTCCACAGTTATGATATTTAGATTACGCCGATATTTAGATTAGCGAAATGAACGGTTGAAGTCCTTCATGCTTAAACATCACTGCTTTTTCGGGCTTTCCTTTCGACCAACGGAACAACTAAAGAATCTCCCTCGAGGTGATGACAGATGCTCTCCTCATCAAAATAAACCGGAGGATAATGAGGGAAAATAAGTAGAAGGGCGGTGTCCTCCGCCCCGGAAAATGGTTTATTATTTCCTCAAGAAGCTTCCCTCTTTCATTTTGTTCCGAGTATTTGCAG</canonical>
            <polymorphic>CTGGATAATATCAATCTTCTGCCGTAAGTCTTTATTAATCCTCCTCTGTATAATTCTCTTCGTCTCGTACATTCTTTCTTGGAATCCGGGCTACATCAGGGTCCAGACATGTGCTTTGATTTCTGACAACGTCTGCACTTTTCCACCTCTGATTTCTGCCCTAGCAATCAAAATGAGCTCTGAGTAACCAGGTTCTGTGTAGTGTCTCAAAATTAATCAAGTGGATACGTGCTCCTTCTTTAGTTCGCCTACGGCTGAGTAACCAGGTTCTGTGCTTCTTGGAATTAAGCTAGTGTTTTTCTATATGAGTTCATAATACAAACTAAAGAAGCTAAACGTCTGAAAATCAAAGAATGAAAATGCAGGCTCCTTTGTTAATGTATTTCGTTATGAGTGTGTTGCCTTGGCTTCAGATATATAATACGACTTCTTCTGCTTCTTCGTGTCTATGTCGAGTTAGAGGAAATGCGCAAAAGAGAGCATTGAAACAAAGATCCGTYTGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAAAAGAAGGAATGTGTGAGAGAGACGGAAAGGTGCAAAGTGCGTTTTGGCTCTCCCAGGCTTTTCATGAAGAAAATAGCACTTTCGATTTTTAAAGATTGCAGTTTATGAAGAATCGGGAATGGAACAAGATTTACATATTTTAAAAAAACAGTGTGGTATTCGTTTCAAGGGAATACTACAGTACTCCACAGTTATGATATTTAGATTACGCCGATATTTAGATTAGCGAAATGAACGGTTGAAGTCCTTCATGCTTAAACATCACTGCTTTTTCGGGCTTTCCTTTCGACCAACGGAACAACTAAAGAATCTCCCTCGAGGTGATGACAGATGCTCTCCTCATCAAAATAAACCGGAGGATAATGAGGGAAAATAAGTAGAAGGGCGGTGTCCTCCGCCCCGGAAAATGGTTTATTATTTCCTCAAGAAGCTTCCCTCTTTCATTTTGTTCCGAGTATTTGCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCTTGGCTTCAGATATATAATAC</pcr_primer_p1>
		<pcr_primer_p2>ATTCTTCATAAACTGCAATCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCCTTGGCTTCAGATATATAATACGACTTCTTCTGCTTCTTCGTGTCTATGTCGAGTTAGAGGAAATGCGCAAAAGAGAGCATTGAAACAAAGATCCGTATGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAAAAGAAGGAATGTGTGAGAGAGACGGAAAGGTGCAAAGTGCGTTTTGGCTCTCCCAGGCTTTTCATGAAGAAAATAGCACTTTCGATTTTTAAAGATTGCAGTTTATGAAGAAT</canonical_amplicon>
		<polymorphic_amplicon>GCCTTGGCTTCAGATATATAATACGACTTCTTCTGCTTCTTCGTGTCTATGTCGAGTTAGAGGAAATGCGCAAAAGAGAGCATTGAAACAAAGATCCGTYTGTTGCATGACACATGAGTAGTAGTAGTAGAGAAAAAAGAAGGAATGTGTGAGAGAGACGGAAAGGTGCAAAGTGCGTTTTGGCTCTCCCAGGCTTTTCATGAAGAAAATAGCACTTTCGATTTTTAAAGATTGCAGTTTATGAAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32776</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>97028</contig_pos>
        <strand>+</strand>
        <context>CTTGTTGCAG[A/C]TATYAAGGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGAATACGACCCAGAAATTCGGATGGCTGACCTTTTCATGCTTGTTGCAG</left_flank>
        <right_flank>TATTAAGGTAATGGTCTTGTTTTTCATACTATTCTATGACAAATATTCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGTAATCATGAGACAATCTGTGGAAGAACCCTATTTAACCTGGAGACACGGTGGTCTCGAGAAGCGCTGGTTTGTGATGCCGAACAATACGTATATCGATTTCACCGACGTTACCAAGTATTTCACGAATGGGGCTTTGAAAGATCTCAATCTAGACTGTGAAACAACAAAAAAGTAAGCTTTATTGTTGAATGAACTTGATTTCGGCAAGCCAGATAGTTTAATTTATAGTCTCTTCTTGCCGTCGTTCACCCATGCAATGGATACGATCGGACAAAAAATGAAGAATTTGAATGTCTCGGATACCGAGCTTACTGTATTGTTGGGTCTGGTTCTACTGGATCCTGGGATTTATGGGATACAGGAATCAACACGAAGATTTCTGAAAGGTGTTCGTGATCAGTTGATTCATGATGTTTACATGTATTACGAAGATGAAATGGCTTCTGAATACGACCCAGAAATTCGGATGGCTGACCTTTTCATGCTTGTTGCAGCTATTAAGGTAATGGTCTTGTTTTTCATACTATTCTATGACAAATATTCACAGATTCACTCTATCAAAACATCTGAAAACATGCATATGCTGCGAGTATTCGATTTGATCCCTGCTGACGCTTGTTTCAATCAAATGCTGGATGTGGAGAGCGTAAATGTGTCTCCGGATGGGAAGAGAGATGCAGAAGCTGAACAGGGCCCGATGCCAGTTTCTGTTCCAGAAGCAGCACGAGTAGATTCTGCATTTCCATACGATCATGATGATGAAAGCCCACCTGTACTCGAAAGAAACTGTGATGAGCCAATTACGCCCTAACTGTGATTGTTAGAACTTCCCGTTTTTAAAGTTACCCCCGTACCTAGTAATGTATTTTCAATTCTCGCTTTCAAGTCGTTATACCTCTTCCCGGTTTTTCTATGGTTCTTTTACGACGATGTTTATTGTGTGCCTATTTAATATTGTTGACATTGACACATATTTTTTTCTCGAAAAGTTCTCA</canonical>
            <polymorphic>TTTGTAATCATGAGACAATCTGTGGAAGAACCCTATTTAACCTGGAGACACGGTGGTCTCGAGAAGCGCTGGTTTGTGATGCCGAACAATACGTATATCGATTTCACCGACGTTACCAAGTATTTCACGAATGGGGCTTTGAAAGATCTCAATCTAGACTGTGAAACAACAAAAAAGTAAGCTTTATTGTTGAATGAACTTGATTTCGGCAAGCCAGATAGTTTAATTTATAGTCTCTTCTTGCCGTCGTTCACCCATGCAATGGATACGATCGGACAAAAAATGAAGAATTTGAATGTCTCGGATACCGAGCTTACTGTATTGTTGGGTCTGGTTCTACTGGATCCTGGGATTTATGGGATACAGGAATCAACACGAAGATTTCTGAAAGGTGTTCGTGATCAGTTGATTCATGATGTTTACATGTATTACGAAGATGAAATGGCTTCTGAATACGACCCAGAAATTCGGATGGCTGACCTTTTCATGCTTGTTGCAGMTATTAAGGTAATGGTCTTGTTTTTCATACTATTCTATGACAAATATTCACAGATTCACTCTATCAAAACATCTGAAAACATGCATATGCTGCGAGTATTCGATTTGATCCCTGCTGACGCTTGTTTCAATCAAATGCTGGATGTGGAGAGCGTAAATGTGTCTCCGGATGGGAAGAGAGATGCAGAAGCTGAACAGGGCCCGATGCCAGTTTCTGTTCCAGAAGCAGCACGAGTAGATTCTGCATTTCCATACGATCATGATGATGAAAGCCCACCTGTACTCGAAAGAAACTGTGATGAGCCAATTACGCCCTAACTGTGATTGTTAGAACTTCCCGTTTTTAAAGTTACCCCCGTACCTAGTAATGTATTTTCAATTCTCGCTTTCAAGTCGTTATACCTCTTCCCGGTTTTTCTATGGTTCTTTTACGACGATGTTTATTGTGTGCCTATTTAATATTGTTGACATTGACACATATTTTTTTCTCGAAAAGTTCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>312 189 187 181 131</canonical_bands>
                <polymorphic_bands>376 312 181 131</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>499 273 136 92</canonical_bands>
                <polymorphic_bands>591 273 136</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>199 189 136 133 99 72 45 32 31 30 24 10</canonical_bands>
                <polymorphic_bands>213 199 136 133 99 72 45 32 31 30 10</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>496 276 136 92</canonical_bands>
                <polymorphic_bands>588 276 136</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTGTTGGGTCTGGTTCTACT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTTGATAGAGTGAATCTGTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATTGTTGGGTCTGGTTCTACTGGATCCTGGGATTTATGGGATACAGGAATCAACACGAAGATTTCTGAAAGGTGTTCGTGATCAGTTGATTCATGATGTTTACATGTATTACGAAGATGAAATGGCTTCTGAATACGACCCAGAAATTCGGATGGCTGACCTTTTCATGCTTGTTGCAGCTATTAAGGTAATGGTCTTGTTTTTCATACTATTCTATGACAAATATTCACAGATTCACTCTATCAAAACA</canonical_amplicon>
		<polymorphic_amplicon>TATTGTTGGGTCTGGTTCTACTGGATCCTGGGATTTATGGGATACAGGAATCAACACGAAGATTTCTGAAAGGTGTTCGTGATCAGTTGATTCATGATGTTTACATGTATTACGAAGATGAAATGGCTTCTGAATACGACCCAGAAATTCGGATGGCTGACCTTTTCATGCTTGTTGCAGMTATTAAGGTAATGGTCTTGTTTTTCATACTATTCTATGACAAATATTCACAGATTCACTCTATCAAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32777</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>97032</contig_pos>
        <strand>+</strand>
        <context>TTGCAGMTAT[C/T]AAGGTAATGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACGACCCAGAAATTCGGATGGCTGACCTTTTCATGCTTGTTGCAGCTAT</left_flank>
        <right_flank>AAGGTAATGGTCTTGTTTTTCATACTATTCTATGACAAATATTCACAGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATCATGAGACAATCTGTGGAAGAACCCTATTTAACCTGGAGACACGGTGGTCTCGAGAAGCGCTGGTTTGTGATGCCGAACAATACGTATATCGATTTCACCGACGTTACCAAGTATTTCACGAATGGGGCTTTGAAAGATCTCAATCTAGACTGTGAAACAACAAAAAAGTAAGCTTTATTGTTGAATGAACTTGATTTCGGCAAGCCAGATAGTTTAATTTATAGTCTCTTCTTGCCGTCGTTCACCCATGCAATGGATACGATCGGACAAAAAATGAAGAATTTGAATGTCTCGGATACCGAGCTTACTGTATTGTTGGGTCTGGTTCTACTGGATCCTGGGATTTATGGGATACAGGAATCAACACGAAGATTTCTGAAAGGTGTTCGTGATCAGTTGATTCATGATGTTTACATGTATTACGAAGATGAAATGGCTTCTGAATACGACCCAGAAATTCGGATGGCTGACCTTTTCATGCTTGTTGCAGCTATTAAGGTAATGGTCTTGTTTTTCATACTATTCTATGACAAATATTCACAGATTCACTCTATCAAAACATCTGAAAACATGCATATGCTGCGAGTATTCGATTTGATCCCTGCTGACGCTTGTTTCAATCAAATGCTGGATGTGGAGAGCGTAAATGTGTCTCCGGATGGGAAGAGAGATGCAGAAGCTGAACAGGGCCCGATGCCAGTTTCTGTTCCAGAAGCAGCACGAGTAGATTCTGCATTTCCATACGATCATGATGATGAAAGCCCACCTGTACTCGAAAGAAACTGTGATGAGCCAATTACGCCCTAACTGTGATTGTTAGAACTTCCCGTTTTTAAAGTTACCCCCGTACCTAGTAATGTATTTTCAATTCTCGCTTTCAAGTCGTTATACCTCTTCCCGGTTTTTCTATGGTTCTTTTACGACGATGTTTATTGTGTGCCTATTTAATATTGTTGACATTGACACATATTTTTTTCTCGAAAAGTTCTCAAAAT</canonical>
            <polymorphic>TAATCATGAGACAATCTGTGGAAGAACCCTATTTAACCTGGAGACACGGTGGTCTCGAGAAGCGCTGGTTTGTGATGCCGAACAATACGTATATCGATTTCACCGACGTTACCAAGTATTTCACGAATGGGGCTTTGAAAGATCTCAATCTAGACTGTGAAACAACAAAAAAGTAAGCTTTATTGTTGAATGAACTTGATTTCGGCAAGCCAGATAGTTTAATTTATAGTCTCTTCTTGCCGTCGTTCACCCATGCAATGGATACGATCGGACAAAAAATGAAGAATTTGAATGTCTCGGATACCGAGCTTACTGTATTGTTGGGTCTGGTTCTACTGGATCCTGGGATTTATGGGATACAGGAATCAACACGAAGATTTCTGAAAGGTGTTCGTGATCAGTTGATTCATGATGTTTACATGTATTACGAAGATGAAATGGCTTCTGAATACGACCCAGAAATTCGGATGGCTGACCTTTTCATGCTTGTTGCAGCTATYAAGGTAATGGTCTTGTTTTTCATACTATTCTATGACAAATATTCACAGATTCACTCTATCAAAACATCTGAAAACATGCATATGCTGCGAGTATTCGATTTGATCCCTGCTGACGCTTGTTTCAATCAAATGCTGGATGTGGAGAGCGTAAATGTGTCTCCGGATGGGAAGAGAGATGCAGAAGCTGAACAGGGCCCGATGCCAGTTTCTGTTCCAGAAGCAGCACGAGTAGATTCTGCATTTCCATACGATCATGATGATGAAAGCCCACCTGTACTCGAAAGAAACTGTGATGAGCCAATTACGCCCTAACTGTGATTGTTAGAACTTCCCGTTTTTAAAGTTACCCCCGTACCTAGTAATGTATTTTCAATTCTCGCTTTCAAGTCGTTATACCTCTTCCCGGTTTTTCTATGGTTCTTTTACGACGATGTTTATTGTGTGCCTATTTAATATTGTTGACATTGACACATATTTTTTTCTCGAAAAGTTCTCAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>339 280 186 112 50 33</canonical_bands>
                <polymorphic_bands>619 186 112 50 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTGTTGGGTCTGGTTCTACT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTTGATAGAGTGAATCTGTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATTGTTGGGTCTGGTTCTACTGGATCCTGGGATTTATGGGATACAGGAATCAACACGAAGATTTCTGAAAGGTGTTCGTGATCAGTTGATTCATGATGTTTACATGTATTACGAAGATGAAATGGCTTCTGAATACGACCCAGAAATTCGGATGGCTGACCTTTTCATGCTTGTTGCAGCTATTAAGGTAATGGTCTTGTTTTTCATACTATTCTATGACAAATATTCACAGATTCACTCTATCAAAACA</canonical_amplicon>
		<polymorphic_amplicon>TATTGTTGGGTCTGGTTCTACTGGATCCTGGGATTTATGGGATACAGGAATCAACACGAAGATTTCTGAAAGGTGTTCGTGATCAGTTGATTCATGATGTTTACATGTATTACGAAGATGAAATGGCTTCTGAATACGACCCAGAAATTCGGATGGCTGACCTTTTCATGCTTGTTGCAGCTATYAAGGTAATGGTCTTGTTTTTCATACTATTCTATGACAAATATTCACAGATTCACTCTATCAAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32778</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>98405</contig_pos>
        <strand>+</strand>
        <context>ACAACACGTG[G/T]TCAGAGTAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGTGACAATATCAGAAAACAACCGGGAGATGAGCTGACAAACAACACGTG</left_flank>
        <right_flank>TCAGAGTAGAATCTGAATTTAGCTCCACTAAACAACGCGCGCACCGTTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACAAACAACGAAGATGAAGAGACCAATGAGCCACTGGGATGTTGGAAGCTTTGATTCGGCGGTTTTCTGAAACATACACATTTTTCGGCTGAAAGTTTCTCTGGTTTTCAGTTTCTGTGTTGGGGGAATTATATCGCGAGTTTCTAAAACTGCCAGCTCACTAAATTGTAGTTATTGACAAAATAGGAAAAAAAGAGGAAAGCTTTCTACTGAAAAATCGATTTGCTTGAAAAATGATTTTTTTACGAAGTCTTTAACCCGAAAAAGAACCTATCTAATATTCGTTCAGGGTTTGTCCCAAACTTACGTTTCCTTTTGGTACGTTTCCCCGTTGAGTGACGTTTTGGCTGAACTGCTTGTTGGCGACGGCCATACGCTGTTTAGGAGCCATTCTGAAAAAAGGGCAGAGATTCTAGAAGCACCGGAATCGAATGAAATTGGAAAAAAAGTGACAATATCAGAAAACAACCGGGAGATGAGCTGACAAACAACACGTGTTCAGAGTAGAATCTGAATTTAGCTCCACTAAACAACGCGCGCACCGTTATTTCGGAGCATCGTACTGAAGAAATGTTGTGAAGATTGTGTCACAAAATGTATTTACAAAGTTTTTATCGATAAGAAAACAGAAATTAGTGTATTAAATTGTGTTGTTCAAATGTGATTCTTTATGAATTCGAATTCAAGAGCCGAGTGATTTCCTCCTCTAAATCGAGAGGGTTGACAGAATGCGAATATCTGGAAAGTGTTCAATCATCAATTTTTTGTTGTTCAATAACAATGAATTACCGTGCAACCACATGACCATTTTTGTCCACTAGAAACTTCGAAAAGTTCCAAGGAATATCAGATGCTAGTGAAGACCCTCGTTCGTTCTTCAAGAACTTCCACAGCGGATGCGTGTTTGGACCATTGACTTCTATCTGAAATTTAGGAAGAATTTGCAGCAATTTTCGTTATAAATACCTTTGAATACATATCAGGAGTATAAGTATAGC</canonical>
            <polymorphic>CCACAAACAACGAAGATGAAGAGACCAATGAGCCACTGGGATGTTGGAAGCTTTGATTCGGCGGTTTTCTGAAACATACACATTTTTCGGCTGAAAGTTTCTCTGGTTTTCAGTTTCTGTGTTGGGGGAATTATATCGCGAGTTTCTAAAACTGCCAGCTCACTAAATTGTAGTTATTGACAAAATAGGAAAAAAAGAGGAAAGCTTTCTACTGAAAAATCGATTTGCTTGAAAAATGATTTTTTTACGAAGTCTTTAACCCGAAAAAGAACCTATCTAATATTCGTTCAGGGTTTGTCCCAAACTTACGTTTCCTTTTGGTACGTTTCCCCGTTGAGTGACGTTTTGGCTGAACTGCTTGTTGGCGACGGCCATACGCTGTTTAGGAGCCATTCTGAAAAAAGGGCAGAGATTCTAGAAGCACCGGAATCGAATGAAATTGGAAAAAAAGTGACAATATCAGAAAACAACCGGGAGATGAGCTGACAAACAACACGTGKTCAGAGTAGAATCTGAATTTAGCTCCACTAAACAACGCGCGCACCGTTATTTCGGAGCATCGTACTGAAGAAATGTTGTGAAGATTGTGTCACAAAATGTATTTACAAAGTTTTTATCGATAAGAAAACAGAAATTAGTGTATTAAATTGTGTTGTTCAAATGTGATTCTTTATGAATTCGAATTCAAGAGCCGAGTGATTTCCTCCTCTAAATCGAGAGGGTTGACAGAATGCGAATATCTGGAAAGTGTTCAATCATCAATTTTTTGTTGTTCAATAACAATGAATTACCGTGCAACCACATGACCATTTTTGTCCACTAGAAACTTCGAAAAGTTCCAAGGAATATCAGATGCTAGTGAAGACCCTCGTTCGTTCTTCAAGAACTTCCACAGCGGATGCGTGTTTGGACCATTGACTTCTATCTGAAATTTAGGAAGAATTTGCAGCAATTTTCGTTATAAATACCTTTGAATACATATCAGGAGTATAAGTATAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCGAATGAAATTGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TCATAAAGAATCACATTTGAACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATCGAATGAAATTGGAAAAAAAGTGACAATATCAGAAAACAACCGGGAGATGAGCTGACAAACAACACGTGTTCAGAGTAGAATCTGAATTTAGCTCCACTAAACAACGCGCGCACCGTTATTTCGGAGCATCGTACTGAAGAAATGTTGTGAAGATTGTGTCACAAAATGTATTTACAAAGTTTTTATCGATAAGAAAACAGAAATTAGTGTATTAAATTGTGTTGTTCAAATGTGATTCTTTATGA</canonical_amplicon>
		<polymorphic_amplicon>AATCGAATGAAATTGGAAAAAAAGTGACAATATCAGAAAACAACCGGGAGATGAGCTGACAAACAACACGTGKTCAGAGTAGAATCTGAATTTAGCTCCACTAAACAACGCGCGCACCGTTATTTCGGAGCATCGTACTGAAGAAATGTTGTGAAGATTGTGTCACAAAATGTATTTACAAAGTTTTTATCGATAAGAAAACAGAAATTAGTGTATTAAATTGTGTTGTTCAAATGTGATTCTTTATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32779</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>114299</contig_pos>
        <strand>+</strand>
        <context>AAACTCCTAA[C/T]TTTCTGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAACTTGTTCAAACCATAAAGGAAATGATAAGAGCAGAAAACTCCTAA</left_flank>
        <right_flank>TTTCTGAAAACGCGTTCTTTTGTTCTCTCTCATCTTCTAAACCAAGCAGC</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTATTGTTTGTGCGTCTCTCACAAAAACTTCAGATCCGATCTATTCTCGTTTGTATAGGCATAAGCGAATGAATCATCAAAACGATCCGTCCATTGAATATGGGCACTTTTCATGGTTCCGTTCTGTAAAAATGTACAGCTTTAAAGCTGGAGCTTTAGAATTCAAATAATGCATCAGTAAACTGGCCAAGTTTCAGATTATTTGATCAACTTTGAGCTGAATTTTCGTTTGTCAAAGTTGCTTCATCCCATGAAAATCAAAAGAAACATTAGGTCGTTCATCTTTCGACAATCATGAAAATACCTAGACTTGAGGAAACGCTTTGAAAATTTCAGTAGCTTTGAATCAGACTTAAAATCATATTTCTACCAATTTTCGTGCTTCCAAGGTATTTATGTCTAAAGATATACTCGTTTTTATCAGTCCGGGTGATTGTGCGCCACCCTGTAAAACTTGTTCAAACCATAAAGGAAATGATAAGAGCAGAAAACTCCTAACTTTCTGAAAACGCGTTCTTTTGTTCTCTCTCATCTTCTAAACCAAGCAGCAAATCCAAAAAGCATAGACTATGTCTTGCATATTAGGAAGATCCAGAAAGATATCATCTCAGCAGGAAATCTTCAAATTCTCAAAAAAGGTGTATGTAATTTGATTCATAAACCAGAGAAACTGAACGCGATGTTTGGGAACCTGGAATTATTGAGAAACTGACTGATAAAAACGGTTATATATTTACAATTAGACATAAGTATGTTGGAAGCACGAAACTTGGTAGAAATATAATTTTACCATGATTGTCCAAAGATAAAATGTTTCTTGCACGCCGTTGTGATCTTCAAGAATAATTTTACAAGCGATTACTCAGCTCAATGTTGATTAAATGATTTGAAACTTGGTCAGTTTACTAATGAATTATTTAAATTTGGTGCACTCCAAATTTGAGTCCAGTATAAGCCTTTACTCAAATGTTATGATATTACAAACTTGAGTCCTGGTAA</canonical>
            <polymorphic>TCTATTGTTTGTGCGTCTCTCACAAAAACTTCAGATCCGATCTATTCTCGTTTGTATAGGCATAAGCGAATGAATCATCAAAACGATCCGTCCATTGAATATGGGCACTTTTCATGGTTCCGTTCTGTAAAAATGTACAGCTTTAAAGCTGGAGCTTTAGAATTCAAATAATGCATCAGTAAACTGGCCAAGTTTCAGATTATTTGATCAACTTTGAGCTGAATTTTCGTTTGTCAAAGTTGCTTCATCCCATGAAAATCAAAAGAAACATTAGGTCGTTCATCTTTCGACAATCATGAAAATACCTAGACTTGAGGAAACGCTTTGAAAATTTCAGTAGCTTTGAATCAGACTTAAAATCATATTTCTACCAATTTTCGTGCTTCCAAGGTATTTATGTCTAAAGATATACTCGTTTTTATCAGTCCGGGTGATTGTGCGCCACCCTGTAAAACTTGTTCAAACCATAAAGGAAATGATAAGAGCAGAAAACTCCTAAYTTTCTGAAAACGCGTTCTTTTGTTCTCTCTCATCTTCTAAACCAAGCAGCAAATCCAAAAAGCATAGACTATGTCTTGCATATTAGGAAGATCCAGAAAGATATCATCTCAGCAGGAAATCTTCAAATTCTCAAAAAAGGTGTATGTAATTTGATTCATAAACCAGAGAAACTGAACGCGATGTTTGGGAACCTGGAATTATTGAGAAACTGACTGATAAAAACGGTTATATATTTACAATTAGACATAAGTATGTTGGAAGCACGAAACTTGGTAGAAATATAATTTTACCATGATTGTCCAAAGATAAAATGTTTCTTGCACGCCGTTGTGATCTTCAAGAATAATTTTACAAGCGATTACTCAGCTCAATGTTGATTAAATGATTTGAAACTTGGTCAGTTTACTAATGAATTATTTAAATTTGGTGCACTCCAAATTTGAGTCCAGTATAAGCCTTTACTCAAATGTTATGATATTACAAACTTGAGTCCTGGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAAAACTTGTTCAAACCATAA</pcr_primer_p1>
		<pcr_primer_p2>TGAATCAAATTACATACACCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>211</pcr_amplicon_size>
		<canonical_amplicon>TGTAAAACTTGTTCAAACCATAAAGGAAATGATAAGAGCAGAAAACTCCTAACTTTCTGAAAACGCGTTCTTTTGTTCTCTCTCATCTTCTAAACCAAGCAGCAAATCCAAAAAGCATAGACTATGTCTTGCATATTAGGAAGATCCAGAAAGATATCATCTCAGCAGGAAATCTTCAAATTCTCAAAAAAGGTGTATGTAATTTGATTCA</canonical_amplicon>
		<polymorphic_amplicon>TGTAAAACTTGTTCAAACCATAAAGGAAATGATAAGAGCAGAAAACTCCTAAYTTTCTGAAAACGCGTTCTTTTGTTCTCTCTCATCTTCTAAACCAAGCAGCAAATCCAAAAAGCATAGACTATGTCTTGCATATTAGGAAGATCCAGAAAGATATCATCTCAGCAGGAAATCTTCAAATTCTCAAAAAAGGTGTATGTAATTTGATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32780</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>114500</contig_pos>
        <strand>+</strand>
        <context>ACCTGGAATT[A/G]TTGAGAAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGATTCATAAACCAGAGAAACTGAACGCGATGTTTGGGAACCTGGAATT</left_flank>
        <right_flank>TTGAGAAACTGACTGATAAAAACGGTTATATATTTACAATTAGACATAAG</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGATCAACTTTGAGCTGAATTTTCGTTTGTCAAAGTTGCTTCATCCCATGAAAATCAAAAGAAACATTAGGTCGTTCATCTTTCGACAATCATGAAAATACCTAGACTTGAGGAAACGCTTTGAAAATTTCAGTAGCTTTGAATCAGACTTAAAATCATATTTCTACCAATTTTCGTGCTTCCAAGGTATTTATGTCTAAAGATATACTCGTTTTTATCAGTCCGGGTGATTGTGCGCCACCCTGTAAAACTTGTTCAAACCATAAAGGAAATGATAAGAGCAGAAAACTCCTAACTTTCTGAAAACGCGTTCTTTTGTTCTCTCTCATCTTCTAAACCAAGCAGCAAATCCAAAAAGCATAGACTATGTCTTGCATATTAGGAAGATCCAGAAAGATATCATCTCAGCAGGAAATCTTCAAATTCTCAAAAAAGGTGTATGTAATTTGATTCATAAACCAGAGAAACTGAACGCGATGTTTGGGAACCTGGAATTATTGAGAAACTGACTGATAAAAACGGTTATATATTTACAATTAGACATAAGTATGTTGGAAGCACGAAACTTGGTAGAAATATAATTTTACCATGATTGTCCAAAGATAAAATGTTTCTTGCACGCCGTTGTGATCTTCAAGAATAATTTTACAAGCGATTACTCAGCTCAATGTTGATTAAATGATTTGAAACTTGGTCAGTTTACTAATGAATTATTTAAATTTGGTGCACTCCAAATTTGAGTCCAGTATAAGCCTTTACTCAAATGTTATGATATTACAAACTTGAGTCCTGGTAATTATGCACCACCCTTTAAGTATTTCAAAATTCTTTAATCTGTGCATACTTGTAAAATTCCGGGCCCGGGCCGAGCCTGAGGAAATTTTCAAGTCCCGGAAGGCCCGGTGTCAAAAATTCTGTATTTTAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTTCCATTTTTTTTTCGTTTTTTGGATTGT</canonical>
            <polymorphic>ATTTGATCAACTTTGAGCTGAATTTTCGTTTGTCAAAGTTGCTTCATCCCATGAAAATCAAAAGAAACATTAGGTCGTTCATCTTTCGACAATCATGAAAATACCTAGACTTGAGGAAACGCTTTGAAAATTTCAGTAGCTTTGAATCAGACTTAAAATCATATTTCTACCAATTTTCGTGCTTCCAAGGTATTTATGTCTAAAGATATACTCGTTTTTATCAGTCCGGGTGATTGTGCGCCACCCTGTAAAACTTGTTCAAACCATAAAGGAAATGATAAGAGCAGAAAACTCCTAACTTTCTGAAAACGCGTTCTTTTGTTCTCTCTCATCTTCTAAACCAAGCAGCAAATCCAAAAAGCATAGACTATGTCTTGCATATTAGGAAGATCCAGAAAGATATCATCTCAGCAGGAAATCTTCAAATTCTCAAAAAAGGTGTATGTAATTTGATTCATAAACCAGAGAAACTGAACGCGATGTTTGGGAACCTGGAATTRTTGAGAAACTGACTGATAAAAACGGTTATATATTTACAATTAGACATAAGTATGTTGGAAGCACGAAACTTGGTAGAAATATAATTTTACCATGATTGTCCAAAGATAAAATGTTTCTTGCACGCCGTTGTGATCTTCAAGAATAATTTTACAAGCGATTACTCAGCTCAATGTTGATTAAATGATTTGAAACTTGGTCAGTTTACTAATGAATTATTTAAATTTGGTGCACTCCAAATTTGAGTCCAGTATAAGCCTTTACTCAAATGTTATGATATTACAAACTTGAGTCCTGGTAATTATGCACCACCCTTTAAGTATTTCAAAATTCTTTAATCTGTGCATACTTGTAAAATTCCGGGCCCGGGCCGAGCCTGAGGAAATTTTCAAGTCCCGGAAGGCCCGGTGTCAAAAATTCTGTATTTTAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTTCCATTTTTTTTTCGTTTTTTGGATTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGATTCATAAACCAGAGAAA</pcr_primer_p1>
		<pcr_primer_p2>GTATGCACAGATTAAAGAATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>400</pcr_amplicon_size>
		<canonical_amplicon>ATTTGATTCATAAACCAGAGAAACTGAACGCGATGTTTGGGAACCTGGAATTATTGAGAAACTGACTGATAAAAACGGTTATATATTTACAATTAGACATAAGTATGTTGGAAGCACGAAACTTGGTAGAAATATAATTTTACCATGATTGTCCAAAGATAAAATGTTTCTTGCACGCCGTTGTGATCTTCAAGAATAATTTTACAAGCGATTACTCAGCTCAATGTTGATTAAATGATTTGAAACTTGGTCAGTTTACTAATGAATTATTTAAATTTGGTGCACTCCAAATTTGAGTCCAGTATAAGCCTTTACTCAAATGTTATGATATTACAAACTTGAGTCCTGGTAATTATGCACCACCCTTTAAGTATTTCAAAATTCTTTAATCTGTGCATAC</canonical_amplicon>
		<polymorphic_amplicon>ATTTGATTCATAAACCAGAGAAACTGAACGCGATGTTTGGGAACCTGGAATTRTTGAGAAACTGACTGATAAAAACGGTTATATATTTACAATTAGACATAAGTATGTTGGAAGCACGAAACTTGGTAGAAATATAATTTTACCATGATTGTCCAAAGATAAAATGTTTCTTGCACGCCGTTGTGATCTTCAAGAATAATTTTACAAGCGATTACTCAGCTCAATGTTGATTAAATGATTTGAAACTTGGTCAGTTTACTAATGAATTATTTAAATTTGGTGCACTCCAAATTTGAGTCCAGTATAAGCCTTTACTCAAATGTTATGATATTACAAACTTGAGTCCTGGTAATTATGCACCACCCTTTAAGTATTTCAAAATTCTTTAATCTGTGCATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32781</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>114563</contig_pos>
        <strand></strand>
        <context>tgttggaagc[A/G]cgaaacttgg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGATAAAAACGGTTATATATTTACAATTAGACATAAGTATGTTGGAAGC</left_flank>
        <right_flank>CGAAACTTGGTAGAAATATAATTTTACCATGATTGTCCAAAGATAAAATG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAACATTAGGTCGTTCATCTTTCGACAATCATGAAAATACCTAGACTTGAGGAAACGCTTTGAAAATTTCAGTAGCTTTGAATCAGACTTAAAATCATATTTCTACCAATTTTCGTGCTTCCAAGGTATTTATGTCTAAAGATATACTCGTTTTTATCAGTCCGGGTGATTGTGCGCCACCCTGTAAAACTTGTTCAAACCATAAAGGAAATGATAAGAGCAGAAAACTCCTAACTTTCTGAAAACGCGTTCTTTTGTTCTCTCTCATCTTCTAAACCAAGCAGCAAATCCAAAAAGCATAGACTATGTCTTGCATATTAGGAAGATCCAGAAAGATATCATCTCAGCAGGAAATCTTCAAATTCTCAAAAAAGGTGTATGTAATTTGATTCATAAACCAGAGAAACTGAACGCGATGTTTGGGAACCTGGAATTATTGAGAAACTGACTGATAAAAACGGTTATATATTTACAATTAGACATAAGTATGTTGGAAGCACGAAACTTGGTAGAAATATAATTTTACCATGATTGTCCAAAGATAAAATGTTTCTTGCACGCCGTTGTGATCTTCAAGAATAATTTTACAAGCGATTACTCAGCTCAATGTTGATTAAATGATTTGAAACTTGGTCAGTTTACTAATGAATTATTTAAATTTGGTGCACTCCAAATTTGAGTCCAGTATAAGCCTTTACTCAAATGTTATGATATTACAAACTTGAGTCCTGGTAATTATGCACCACCCTTTAAGTATTTCAAAATTCTTTAATCTGTGCATACTTGTAAAATTCCGGGCCCGGGCCGAGCCTGAGGAAATTTTCAAGTCCCGGAAGGCCCGGTGTCAAAAATTCTGTATTTTAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTTCCATTTTTTTTTCGTTTTTTGGATTGTTTGTCTGTCTAATCAAAAAAGATCGAAAAAACTCGAAAAAAAAATTTTGGTCGAAAAAAATCA</canonical>
            <polymorphic>GAAACATTAGGTCGTTCATCTTTCGACAATCATGAAAATACCTAGACTTGAGGAAACGCTTTGAAAATTTCAGTAGCTTTGAATCAGACTTAAAATCATATTTCTACCAATTTTCGTGCTTCCAAGGTATTTATGTCTAAAGATATACTCGTTTTTATCAGTCCGGGTGATTGTGCGCCACCCTGTAAAACTTGTTCAAACCATAAAGGAAATGATAAGAGCAGAAAACTCCTAACTTTCTGAAAACGCGTTCTTTTGTTCTCTCTCATCTTCTAAACCAAGCAGCAAATCCAAAAAGCATAGACTATGTCTTGCATATTAGGAAGATCCAGAAAGATATCATCTCAGCAGGAAATCTTCAAATTCTCAAAAAAGGTGTATGTAATTTGATTCATAAACCAGAGAAACTGAACGCGATGTTTGGGAACCTGGAATTATTGAGAAACTGACTGATAAAAACGGTTATATATTTACAATTAGACATAAGTATGTTGGAAGCRCGAAACTTGGTAGAAATATAATTTTACCATGATTGTCCAAAGATAAAATGTTTCTTGCACGCCGTTGTGATCTTCAAGAATAATTTTACAAGCGATTACTCAGCTCAATGTTGATTAAATGATTTGAAACTTGGTCAGTTTACTAATGAATTATTTAAATTTGGTGCACTCCAAATTTGAGTCCAGTATAAGCCTTTACTCAAATGTTATGATATTACAAACTTGAGTCCTGGTAATTATGCACCACCCTTTAAGTATTTCAAAATTCTTTAATCTGTGCATACTTGTAAAATTCCGGGCCCGGGCCGAGCCTGAGGAAATTTTCAAGTCCCGGAAGGCCCGGTGTCAAAAATTCTGTATTTTAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTTCCATTTTTTTTTCGTTTTTTGGATTGTTTGTCTGTCTAATCAAAAAAGATCGAAAAAACTCGAAAAAAAAATTTTGGTCGAAAAAAATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>198 155 122 118 97 75 66 59 51 33 10 6 5 3 2</canonical_bands>
                <polymorphic_bands>198 181 155 118 97 75 66 51 33 10 6 5 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCATAAACCAGAGAAACTGAAC</pcr_primer_p1>
		<pcr_primer_p2>GTATGCACAGATTAAAGAATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>394</pcr_amplicon_size>
		<canonical_amplicon>TTCATAAACCAGAGAAACTGAACGCGATGTTTGGGAACCTGGAATTATTGAGAAACTGACTGATAAAAACGGTTATATATTTACAATTAGACATAAGTATGTTGGAAGCACGAAACTTGGTAGAAATATAATTTTACCATGATTGTCCAAAGATAAAATGTTTCTTGCACGCCGTTGTGATCTTCAAGAATAATTTTACAAGCGATTACTCAGCTCAATGTTGATTAAATGATTTGAAACTTGGTCAGTTTACTAATGAATTATTTAAATTTGGTGCACTCCAAATTTGAGTCCAGTATAAGCCTTTACTCAAATGTTATGATATTACAAACTTGAGTCCTGGTAATTATGCACCACCCTTTAAGTATTTCAAAATTCTTTAATCTGTGCATAC</canonical_amplicon>
		<polymorphic_amplicon>TTCATAAACCAGAGAAACTGAACGCGATGTTTGGGAACCTGGAATTATTGAGAAACTGACTGATAAAAACGGTTATATATTTACAATTAGACATAAGTATGTTGGAAGCRCGAAACTTGGTAGAAATATAATTTTACCATGATTGTCCAAAGATAAAATGTTTCTTGCACGCCGTTGTGATCTTCAAGAATAATTTTACAAGCGATTACTCAGCTCAATGTTGATTAAATGATTTGAAACTTGGTCAGTTTACTAATGAATTATTTAAATTTGGTGCACTCCAAATTTGAGTCCAGTATAAGCCTTTACTCAAATGTTATGATATTACAAACTTGAGTCCTGGTAATTATGCACCACCCTTTAAGTATTTCAAAATTCTTTAATCTGTGCATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32782</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>116603</contig_pos>
        <strand>+</strand>
        <context>cactcaaaaa[C/T]gtcaatccgg</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCCGGATTCCGAGAAAATTATTTTATTCCGGATTCCGTCACTCAAAAA</left_flank>
        <right_flank>GTCAATCCGGACATCTATGATTTATAGGCATAAAAAGTTTCGGTTATTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACAAGTCGACACAGAGTCGACTTTTGTCGATTCCTGTCGACAAAAGTCGACAAATGTCGAGACGAGTCGACACGACACCGGCCTAACTTTATGATGGCCTAACTGTTGCAAATTGAATTTTCTAGGCCACTAAAGTTATGACCTAGAAATTGTCTATCATTATCCCGGTGTGATTTCTAGGCCGTTTACCATTGTGGCCTAGAAAACTCAAACTTATAAAAGTTAGGCCACCATGTTAAAATGACCTGGAAAACACATTAGATGAAAATTATACTATTTATTGCATAGATGTCCGGAGTTCGGAATCCGTATTCCGGACTCCGGTATATTACTTTTATTCTGGACTCCGGATTCCGTGAACTTTTTCTTTTTTTTTTTCGTATTCCGGAAAATTATTGTCATTCCGGATTCCGGATTCCGTATACCGTAAAATTTTCATTTGTCCGTATTCCGGATTCCGAGAAAATTATTTTATTCCGGATTCCGTCACTCAAAAAAGTCAATCCGGACATCTATGATTTATAGGCATAAAAAGTTTCGGTTATTCTGGTCCTTATTAGAATTAAAAAAAGATGTTTGCCATCCTGCTCAACCGACGTATGGGAACCTTATATTAAAAGTTTTGTAGTCTATAGAAGGGACATAGAATTTCTAGATTTTTTTCTTTCAAGAAGCAGCAAAAACTCCCATTCCTTGGTCTAGAAACCACGATTGTTTTTCATCTAAAACCCGAGATATACCGTTTAGATTTTTATCAACTTTGTACTGTTTTTAAAAAGGAAATGAGCAGGAATAAGTCGAAGAAGCCTCCCCGCTTTGAATTACTGTAGTTTTGCCGAACTTACATGCCATATTATTGGAAAATGAGAATTCGTTTCTCTCATTTCTAAAGTTATCATCTTTGCCTCCTTTCTTTTCTGTCTTCCAGTACTCACAGTAGTCTTTTGTGAAATTCGCTCCACCGTCTGAAAATTTAAAATACTTAAAGTAAATTTTTT</canonical>
            <polymorphic>ACACAAGTCGACACAGAGTCGACTTTTGTCGATTCCTGTCGACAAAAGTCGACAAATGTCGAGACGAGTCGACACGACACCGGCCTAACTTTATGATGGCCTAACTGTTGCAAATTGAATTTTCTAGGCCACTAAAGTTATGACCTAGAAATTGTCTATCATTATCCCGGTGTGATTTCTAGGCCGTTTACCATTGTGGCCTAGAAAACTCAAACTTATAAAAGTTAGGCCACCATGTTAAAATGACCTGGAAAACACATTAGATGAAAATTATACTATTTATTGCATAGATGTCCGGAGTTCGGAATCCGTATTCCGGACTCCGGTATATTACTTTTATTCTGGACTCCGGATTCCGTGAACTTTTTCTTTTTTTTTTTCGTATTCCGGAAAATTATTGTCATTCCGGATTCCGGATTCCGTATACCGTAAAATTTTCATTTGTCCGTATTCCGGATTCCGAGAAAATTATTTTATTCCGGATTCCGTCACTCAAAAAYGTCAATCCGGACATCTATGATTTATAGGCATAAAAAGTTTCGGTTATTCTGGTCCTTATTAGAATTAAAAAAAGATGTTTGCCATCCTGCTCAACCGACGTATGGGAACCTTATATTAAAAGTTTTGTAGTCTATAGAAGGGACATAGAATTTCTAGATTTTTTTCTTTCAAGAAGCAGCAAAAACTCCCATTCCTTGGTCTAGAAACCACGATTGTTTTTCATCTAAAACCCGAGATATACCGTTTAGATTTTTATCAACTTTGTACTGTTTTTAAAAAGGAAATGAGCAGGAATAAGTCGAAGAAGCCTCCCCGCTTTGAATTACTGTAGTTTTGCCGAACTTACATGCCATATTATTGGAAAATGAGAATTCGTTTCTCTCATTTCTAAAGTTATCATCTTTGCCTCCTTTCTTTTCTGTCTTCCAGTACTCACAGTAGTCTTTTGTGAAATTCGCTCCACCGTCTGAAAATTTAAAATACTTAAAGTAAATTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGTAGAGACAAAAACAACAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTAATTCTAATAAGGACCAGAATA</pcr_primer_p2>
		<pcr_amplicon_size>662</pcr_amplicon_size>
		<canonical_amplicon>AAGTCAATCCGGACATCTATGATTTATAGGCATAAAAAGTTTCGGTTATTCTGGTCCTTATTAGAATTAAAA</canonical_amplicon>
		<polymorphic_amplicon>AYGTCAATCCGGACATCTATGATTTATAGGCATAAAAAGTTTCGGTTATTCTGGTCCTTATTAGAATTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32783</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>117821</contig_pos>
        <strand></strand>
        <context>ACAAATTTGT[C/A]AMTGAACGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AACATGAAAAAATCAGAAAACTCGTTGATTGGATCAAGAAACAAATTTGT</left_flank>
        <right_flank>AATGAACGTTCAAATGATTCAGAAGTTTTTGGCTTGTTTTAGGGATCGCA</right_flank>
        <qual_score>49</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTATTTGAAACATGCGATATTAGACCTATCAACTATAAACTATGAACTTTCAGAAGACGTGGCTAGAATTGACATCTCCTTCTCTACCAAATGAAAAACATTGTGTAGTGGTGTTTGAATATGAAATTGGACACGATAGAAGACGATGCTGCTCTTCTGAAGATGCTCGATTGGCCGGAAATGTGTGAAACACAAACAACTGAATGGGAAGATAGGAGTAGAAGAGGGGAGGAGCTCATGAAGAGATGAGCAAAAAGACGGGGATTTTTGATAATGGGGGATAAGAGGAAAGAAGAAGAAGAACGGAGGGAATGCATGAGAAATGAGTGCAGGTGTTGGATTGATATGAATCGGAATGGAGTGAAAAAGCTCAATGAGCAACAGATGGGGGTGGATGATAAATTGGAGTAAAAGAGATGATGGAGAAGGAATAAAAAAGATAAGACAAACATGAAAAAATCAGAAAACTCGTTGATTGGATCAAGAAACAAATTTGTCAATGAACGTTCAAATGATTCAGAAGTTTTTGGCTTGTTTTAGGGATCGCATGACTGTGGTTTAAGCCATTCGGTAGACAAATTTCAAGCCGACCGATTTGACCGAATTCTTGCATTTTTTTTTTCAATATGCCACAGAGTGTTCGCGTACGCAGAATTTTATATTTCAATTATTTAAATAATCTTACAGTGTTGGTCAGCGGTCGCCGATTTTTGACCGACCGGAATGGAAGCCTTACTTTTGTCTTATTGAAAAACTAGGTCATTCCATAAAAAGAATGGAAACCGAAACAAAGATCTTCTCCATACTCTGAATATTTCATTTGAAAAAAAGAGTCAGACTGCGCCAAAAATAACCAAAACAGGTAAAGACCGCCCATATCTTTTCGTCCTCTTCTTTTGAATTCTCAAAACACTTGAATTGTTTCCTTTCAACGAAACAAAAATATATACCAAAAAGAGTCTTCTTTGGAACCAGGAGCTTCAATGAAGAGCCAAGAG</canonical>
            <polymorphic>AACTATTTGAAACATGCGATATTAGACCTATCAACTATAAACTATGAACTTTCAGAAGACGTGGCTAGAATTGACATCTCCTTCTCTACCAAATGAAAAACATTGTGTAGTGGTGTTTGAATATGAAATTGGACACGATAGAAGACGATGCTGCTCTTCTGAAGATGCTCGATTGGCCGGAAATGTGTGAAACACAAACAACTGAATGGGAAGATAGGAGTAGAAGAGGGGAGGAGCTCATGAAGAGATGAGCAAAAAGACGGGGATTTTTGATAATGGGGGATAAGAGGAAAGAAGAAGAAGAACGGAGGGAATGCATGAGAAATGAGTGCAGGTGTTGGATTGATATGAATCGGAATGGAGTGAAAAAGCTCAATGAGCAACAGATGGGGGTGGATGATAAATTGGAGTAAAAGAGATGATGGAGAAGGAATAAAAAAGATAAGACAAACATGAAAAAATCAGAAAACTCGTTGATTGGATCAAGAAACAAATTTGTMAATGAACGTTCAAATGATTCAGAAGTTTTTGGCTTGTTTTAGGGATCGCATGACTGTGGTTTAAGCCATTCGGTAGACAAATTTCAAGCCGACCGATTTGACCGAATTCTTGCATTTTTTTTTTCAATATGCCACAGAGTGTTCGCGTACGCAGAATTTTATATTTCAATTATTTAAATAATCTTACAGTGTTGGTCAGCGGTCGCCGATTTTTGACCGACCGGAATGGAAGCCTTACTTTTGTCTTATTGAAAAACTAGGTCATTCCATAAAAAGAATGGAAACCGAAACAAAGATCTTCTCCATACTCTGAATATTTCATTTGAAAAAAAGAGTCAGACTGCGCCAAAAATAACCAAAACAGGTAAAGACCGCCCATATCTTTTCGTCCTCTTCTTTTGAATTCTCAAAACACTTGAATTGTTTCCTTTCAACGAAACAAAAATATATACCAAAAAGAGTCTTCTTTGGAACCAGGAGCTTCAATGAAGAGCCAAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGATGATAAATTGGAGTAAAAG</pcr_primer_p1>
		<pcr_primer_p2>AACACTCTGTGGCATATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGATGATAAATTGGAGTAAAAGAGATGATGGAGAAGGAATAAAAAAGATAAGACAAACATGAAAAAATCAGAAAACTCGTTGATTGGATCAAGAAACAAATTTGTCAATGAACGTTCAAATGATTCAGAAGTTTTTGGCTTGTTTTAGGGATCGCATGACTGTGGTTTAAGCCATTCGGTAGACAAATTTCAAGCCGACCGATTTGACCGAATTCTTGCATTTTTTTTTTCAATATGCCACAGAGTGTT</canonical_amplicon>
		<polymorphic_amplicon>TGGATGATAAATTGGAGTAAAAGAGATGATGGAGAAGGAATAAAAAAGATAAGACAAACATGAAAAAATCAGAAAACTCGTTGATTGGATCAAGAAACAAATTTGTMAATGAACGTTCAAATGATTCAGAAGTTTTTGGCTTGTTTTAGGGATCGCATGACTGTGGTTTAAGCCATTCGGTAGACAAATTTCAAGCCGACCGATTTGACCGAATTCTTGCATTTTTTTTTTCAATATGCCACAGAGTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32784</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>117823</contig_pos>
        <strand>+</strand>
        <context>AAATTTGTMA[A/C]TGAACGTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATGAAAAAATCAGAAAACTCGTTGATTGGATCAAGAAACAAATTTGTCA</left_flank>
        <right_flank>TGAACGTTCAAATGATTCAGAAGTTTTTGGCTTGTTTTAGGGATCGCATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATTTGAAACATGCGATATTAGACCTATCAACTATAAACTATGAACTTTCAGAAGACGTGGCTAGAATTGACATCTCCTTCTCTACCAAATGAAAAACATTGTGTAGTGGTGTTTGAATATGAAATTGGACACGATAGAAGACGATGCTGCTCTTCTGAAGATGCTCGATTGGCCGGAAATGTGTGAAACACAAACAACTGAATGGGAAGATAGGAGTAGAAGAGGGGAGGAGCTCATGAAGAGATGAGCAAAAAGACGGGGATTTTTGATAATGGGGGATAAGAGGAAAGAAGAAGAAGAACGGAGGGAATGCATGAGAAATGAGTGCAGGTGTTGGATTGATATGAATCGGAATGGAGTGAAAAAGCTCAATGAGCAACAGATGGGGGTGGATGATAAATTGGAGTAAAAGAGATGATGGAGAAGGAATAAAAAAGATAAGACAAACATGAAAAAATCAGAAAACTCGTTGATTGGATCAAGAAACAAATTTGTCAATGAACGTTCAAATGATTCAGAAGTTTTTGGCTTGTTTTAGGGATCGCATGACTGTGGTTTAAGCCATTCGGTAGACAAATTTCAAGCCGACCGATTTGACCGAATTCTTGCATTTTTTTTTTCAATATGCCACAGAGTGTTCGCGTACGCAGAATTTTATATTTCAATTATTTAAATAATCTTACAGTGTTGGTCAGCGGTCGCCGATTTTTGACCGACCGGAATGGAAGCCTTACTTTTGTCTTATTGAAAAACTAGGTCATTCCATAAAAAGAATGGAAACCGAAACAAAGATCTTCTCCATACTCTGAATATTTCATTTGAAAAAAAGAGTCAGACTGCGCCAAAAATAACCAAAACAGGTAAAGACCGCCCATATCTTTTCGTCCTCTTCTTTTGAATTCTCAAAACACTTGAATTGTTTCCTTTCAACGAAACAAAAATATATACCAAAAAGAGTCTTCTTTGGAACCAGGAGCTTCAATGAAGAGCCAAGAGCC</canonical>
            <polymorphic>CTATTTGAAACATGCGATATTAGACCTATCAACTATAAACTATGAACTTTCAGAAGACGTGGCTAGAATTGACATCTCCTTCTCTACCAAATGAAAAACATTGTGTAGTGGTGTTTGAATATGAAATTGGACACGATAGAAGACGATGCTGCTCTTCTGAAGATGCTCGATTGGCCGGAAATGTGTGAAACACAAACAACTGAATGGGAAGATAGGAGTAGAAGAGGGGAGGAGCTCATGAAGAGATGAGCAAAAAGACGGGGATTTTTGATAATGGGGGATAAGAGGAAAGAAGAAGAAGAACGGAGGGAATGCATGAGAAATGAGTGCAGGTGTTGGATTGATATGAATCGGAATGGAGTGAAAAAGCTCAATGAGCAACAGATGGGGGTGGATGATAAATTGGAGTAAAAGAGATGATGGAGAAGGAATAAAAAAGATAAGACAAACATGAAAAAATCAGAAAACTCGTTGATTGGATCAAGAAACAAATTTGTCAMTGAACGTTCAAATGATTCAGAAGTTTTTGGCTTGTTTTAGGGATCGCATGACTGTGGTTTAAGCCATTCGGTAGACAAATTTCAAGCCGACCGATTTGACCGAATTCTTGCATTTTTTTTTTCAATATGCCACAGAGTGTTCGCGTACGCAGAATTTTATATTTCAATTATTTAAATAATCTTACAGTGTTGGTCAGCGGTCGCCGATTTTTGACCGACCGGAATGGAAGCCTTACTTTTGTCTTATTGAAAAACTAGGTCATTCCATAAAAAGAATGGAAACCGAAACAAAGATCTTCTCCATACTCTGAATATTTCATTTGAAAAAAAGAGTCAGACTGCGCCAAAAATAACCAAAACAGGTAAAGACCGCCCATATCTTTTCGTCCTCTTCTTTTGAATTCTCAAAACACTTGAATTGTTTCCTTTCAACGAAACAAAAATATATACCAAAAAGAGTCTTCTTTGGAACCAGGAGCTTCAATGAAGAGCCAAGAGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGATGATAAATTGGAGTAAAAG</pcr_primer_p1>
		<pcr_primer_p2>AACACTCTGTGGCATATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGATGATAAATTGGAGTAAAAGAGATGATGGAGAAGGAATAAAAAAGATAAGACAAACATGAAAAAATCAGAAAACTCGTTGATTGGATCAAGAAACAAATTTGTCAATGAACGTTCAAATGATTCAGAAGTTTTTGGCTTGTTTTAGGGATCGCATGACTGTGGTTTAAGCCATTCGGTAGACAAATTTCAAGCCGACCGATTTGACCGAATTCTTGCATTTTTTTTTTCAATATGCCACAGAGTGTT</canonical_amplicon>
		<polymorphic_amplicon>TGGATGATAAATTGGAGTAAAAGAGATGATGGAGAAGGAATAAAAAAGATAAGACAAACATGAAAAAATCAGAAAACTCGTTGATTGGATCAAGAAACAAATTTGTCAMTGAACGTTCAAATGATTCAGAAGTTTTTGGCTTGTTTTAGGGATCGCATGACTGTGGTTTAAGCCATTCGGTAGACAAATTTCAAGCCGACCGATTTGACCGAATTCTTGCATTTTTTTTTTCAATATGCCACAGAGTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32785</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>117907</contig_pos>
        <strand>+</strand>
        <context>GACAAATTTC[A/G]AGCCGACCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTTAGGGATCGCATGACTGTGGTTTAAGCCATTCGGTAGACAAATTTC</left_flank>
        <right_flank>AGCCGACCGATTTGACCGAATTCTTGCATTTTTTTTTTCAATATGCCACA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACCAAATGAAAAACATTGTGTAGTGGTGTTTGAATATGAAATTGGACACGATAGAAGACGATGCTGCTCTTCTGAAGATGCTCGATTGGCCGGAAATGTGTGAAACACAAACAACTGAATGGGAAGATAGGAGTAGAAGAGGGGAGGAGCTCATGAAGAGATGAGCAAAAAGACGGGGATTTTTGATAATGGGGGATAAGAGGAAAGAAGAAGAAGAACGGAGGGAATGCATGAGAAATGAGTGCAGGTGTTGGATTGATATGAATCGGAATGGAGTGAAAAAGCTCAATGAGCAACAGATGGGGGTGGATGATAAATTGGAGTAAAAGAGATGATGGAGAAGGAATAAAAAAGATAAGACAAACATGAAAAAATCAGAAAACTCGTTGATTGGATCAAGAAACAAATTTGTCAATGAACGTTCAAATGATTCAGAAGTTTTTGGCTTGTTTTAGGGATCGCATGACTGTGGTTTAAGCCATTCGGTAGACAAATTTCAAGCCGACCGATTTGACCGAATTCTTGCATTTTTTTTTTCAATATGCCACAGAGTGTTCGCGTACGCAGAATTTTATATTTCAATTATTTAAATAATCTTACAGTGTTGGTCAGCGGTCGCCGATTTTTGACCGACCGGAATGGAAGCCTTACTTTTGTCTTATTGAAAAACTAGGTCATTCCATAAAAAGAATGGAAACCGAAACAAAGATCTTCTCCATACTCTGAATATTTCATTTGAAAAAAAGAGTCAGACTGCGCCAAAAATAACCAAAACAGGTAAAGACCGCCCATATCTTTTCGTCCTCTTCTTTTGAATTCTCAAAACACTTGAATTGTTTCCTTTCAACGAAACAAAAATATATACCAAAAAGAGTCTTCTTTGGAACCAGGAGCTTCAATGAAGAGCCAAGAGCCATTGACATCTTCATTTTTCGAAAACCGACACCTCCTCATCAATTCAAAAACGTCTATATCATTTCCGTTACGAATTTCAATGCC</canonical>
            <polymorphic>TACCAAATGAAAAACATTGTGTAGTGGTGTTTGAATATGAAATTGGACACGATAGAAGACGATGCTGCTCTTCTGAAGATGCTCGATTGGCCGGAAATGTGTGAAACACAAACAACTGAATGGGAAGATAGGAGTAGAAGAGGGGAGGAGCTCATGAAGAGATGAGCAAAAAGACGGGGATTTTTGATAATGGGGGATAAGAGGAAAGAAGAAGAAGAACGGAGGGAATGCATGAGAAATGAGTGCAGGTGTTGGATTGATATGAATCGGAATGGAGTGAAAAAGCTCAATGAGCAACAGATGGGGGTGGATGATAAATTGGAGTAAAAGAGATGATGGAGAAGGAATAAAAAAGATAAGACAAACATGAAAAAATCAGAAAACTCGTTGATTGGATCAAGAAACAAATTTGTCAATGAACGTTCAAATGATTCAGAAGTTTTTGGCTTGTTTTAGGGATCGCATGACTGTGGTTTAAGCCATTCGGTAGACAAATTTCRAGCCGACCGATTTGACCGAATTCTTGCATTTTTTTTTTCAATATGCCACAGAGTGTTCGCGTACGCAGAATTTTATATTTCAATTATTTAAATAATCTTACAGTGTTGGTCAGCGGTCGCCGATTTTTGACCGACCGGAATGGAAGCCTTACTTTTGTCTTATTGAAAAACTAGGTCATTCCATAAAAAGAATGGAAACCGAAACAAAGATCTTCTCCATACTCTGAATATTTCATTTGAAAAAAAGAGTCAGACTGCGCCAAAAATAACCAAAACAGGTAAAGACCGCCCATATCTTTTCGTCCTCTTCTTTTGAATTCTCAAAACACTTGAATTGTTTCCTTTCAACGAAACAAAAATATATACCAAAAAGAGTCTTCTTTGGAACCAGGAGCTTCAATGAAGAGCCAAGAGCCATTGACATCTTCATTTTTCGAAAACCGACACCTCCTCATCAATTCAAAAACGTCTATATCATTTCCGTTACGAATTTCAATGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGTTTTTGGCTTGTTTTAG</pcr_primer_p1>
		<pcr_primer_p2>TGGAATGACCTAGTTTTTCAATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGAAGTTTTTGGCTTGTTTTAGGGATCGCATGACTGTGGTTTAAGCCATTCGGTAGACAAATTTCAAGCCGACCGATTTGACCGAATTCTTGCATTTTTTTTTTCAATATGCCACAGAGTGTTCGCGTACGCAGAATTTTATATTTCAATTATTTAAATAATCTTACAGTGTTGGTCAGCGGTCGCCGATTTTTGACCGACCGGAATGGAAGCCTTACTTTTGTCTTATTGAAAAACTAGGTCATTCCA</canonical_amplicon>
		<polymorphic_amplicon>AGAAGTTTTTGGCTTGTTTTAGGGATCGCATGACTGTGGTTTAAGCCATTCGGTAGACAAATTTCRAGCCGACCGATTTGACCGAATTCTTGCATTTTTTTTTTCAATATGCCACAGAGTGTTCGCGTACGCAGAATTTTATATTTCAATTATTTAAATAATCTTACAGTGTTGGTCAGCGGTCGCCGATTTTTGACCGACCGGAATGGAAGCCTTACTTTTGTCTTATTGAAAAACTAGGTCATTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32786</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>187412</contig_pos>
        <strand></strand>
        <context>tttttgaaat[C/T]tttttgtaca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTGCGGGTATCGAGCGGAATTACTTTAATTTTTTCGCGTTTTTGAAAT</left_flank>
        <right_flank>TTTTTGTACAAAAAGAACAAAATTGTGTGAATATTTCTCCAATTTTCGGT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCATCATCAATTCGAACCGATAAAAAAATCGGATTTTTAATTGTCGTTTTTTGAAGATGCAAAGACACGAAGACATCAAACAGGTGTTGTGTTTATGTTAGGCGGATATCGATACATCTTACTCACACTCAACAAATCAAGACACTGGACAACAAAACAAAAGAGATATGCTTTCCCTTTCGTTGTATTAATATGATACGAGAAAGAGATTAATCTTTGAATGTTCTTTTTGGTTTTTGTTCTCTATTTTTCTTCAGGGATGTTTGGAACGGAATTCTGAATTCCGAAAAATTTCCGATAAATGAGCATTTTCGGTGTGAAATTCCAAGAAAAAAAAATTGCTGACGGAACATTTCCGAAGCGTTTTTTCGGAATATCTCGGATTTCTTTTTCGGAATCAAAGATTTTTGAACTACGATATTTTACAGGCGCACGCTAAAAGTTTCTTTGCGGGTATCGAGCGGAATTACTTTAATTTTTTCGCGTTTTTGAAATCTTTTTGTACAAAAAGAACAAAATTGTGTGAATATTTCTCCAATTTTCGGTTTTTTTGTGTTGGGAAAATGGGATTTCTATTTACATTAGAATTTGTTCGAAATTCTGAAATAGTTAAAATCGAAATATTCCGAAAATCCGAAGTTCTAAACTCGGATTTTTCGATATTTCGAAAAATTCCTGTTTTTATTTTGAGCAAAGGACAAAAAAAACGATAGAGGTGGTTCAGAAGTGGCCACTAGATTCTCCTCTTTAAAAATTTGAAGTACTACATTTTGTACTTCAGAATTATTTTCTCCACCAAATCTTTATGCAGTTTCTTCTTAACGTTTAATGGAAATTTACGACTTCGTGCTGTTGGGATGTGCTTCCTCCTCTTCGTCTTCTTTTTTCGTCTCCCCTAGTTTTCTCTCATTTCAGCTCGATTGTCATGCCGCTTGGGGTCTCCCCACATGTTCCGCTGCCATCTCTCCTCTTCCTTCCTCTTCTTTACTCCGGAGA</canonical>
            <polymorphic>TTTTTCATCATCAATTCGAACCGATAAAAAAATCGGATTTTTAATTGTCGTTTTTTGAAGATGCAAAGACACGAAGACATCAAACAGGTGTTGTGTTTATGTTAGGCGGATATCGATACATCTTACTCACACTCAACAAATCAAGACACTGGACAACAAAACAAAAGAGATATGCTTTCCCTTTCGTTGTATTAATATGATACGAGAAAGAGATTAATCTTTGAATGTTCTTTTTGGTTTTTGTTCTCTATTTTTCTTCAGGGATGTTTGGAACGGAATTCTGAATTCCGAAAAATTTCCGATAAATGAGCATTTTCGGTGTGAAATTCCAAGAAAAAAAAATTGCTGACGGAACATTTCCGAAGCGTTTTTTCGGAATATCTCGGATTTCTTTTTCGGAATCAAAGATTTTTGAACTACGATATTTTACAGGCGCACGCTAAAAGTTTCTTTGCGGGTATCGAGCGGAATTACTTTAATTTTTTCGCGTTTTTGAAATYTTTTTGTACAAAAAGAACAAAATTGTGTGAATATTTCTCCAATTTTCGGTTTTTTTGTGTTGGGAAAATGGGATTTCTATTTACATTAGAATTTGTTCGAAATTCTGAAATAGTTAAAATCGAAATATTCCGAAAATCCGAAGTTCTAAACTCGGATTTTTCGATATTTCGAAAAATTCCTGTTTTTATTTTGAGCAAAGGACAAAAAAAACGATAGAGGTGGTTCAGAAGTGGCCACTAGATTCTCCTCTTTAAAAATTTGAAGTACTACATTTTGTACTTCAGAATTATTTTCTCCACCAAATCTTTATGCAGTTTCTTCTTAACGTTTAATGGAAATTTACGACTTCGTGCTGTTGGGATGTGCTTCCTCCTCTTCGTCTTCTTTTTTCGTCTCCCCTAGTTTTCTCTCATTTCAGCTCGATTGTCATGCCGCTTGGGGTCTCCCCACATGTTCCGCTGCCATCTCTCCTCTTCCTTCCTCTTCTTTACTCCGGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTTTTTGTTCTCTATTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TGTCCTTTGCTCAAAATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>471</pcr_amplicon_size>
		<canonical_amplicon>TTGGTTTTTGTTCTCTATTTTTCTTCAGGGATGTTTGGAACGGAATTCTGAATTCCGAAAAATTTCCGATAAATGAGCATTTTCGGTGTGAAATTCCAAGAAAAAAAAATTGCTGACGGAACATTTCCGAAGCGTTTTTTCGGAATATCTCGGATTTCTTTTTCGGAATCAAAGATTTTTGAACTACGATATTTTACAGGCGCACGCTAAAAGTTTCTTTGCGGGTATCGAGCGGAATTACTTTAATTTTTTCGCGTTTTTGAAATCTTTTTGTACAAAAAGAACAAAATTGTGTGAATATTTCTCCAATTTTCGGTTTTTTTGTGTTGGGAAAATGGGATTTCTATTTACATTAGAATTTGTTCGAAATTCTGAAATAGTTAAAATCGAAATATTCCGAAAATCCGAAGTTCTAAACTCGGATTTTTCGATATTTCGAAAAATTCCTGTTTTTATTTTGAGCAAAGGACA</canonical_amplicon>
		<polymorphic_amplicon>TTGGTTTTTGTTCTCTATTTTTCTTCAGGGATGTTTGGAACGGAATTCTGAATTCCGAAAAATTTCCGATAAATGAGCATTTTCGGTGTGAAATTCCAAGAAAAAAAAATTGCTGACGGAACATTTCCGAAGCGTTTTTTCGGAATATCTCGGATTTCTTTTTCGGAATCAAAGATTTTTGAACTACGATATTTTACAGGCGCACGCTAAAAGTTTCTTTGCGGGTATCGAGCGGAATTACTTTAATTTTTTCGCGTTTTTGAAATYTTTTTGTACAAAAAGAACAAAATTGTGTGAATATTTCTCCAATTTTCGGTTTTTTTGTGTTGGGAAAATGGGATTTCTATTTACATTAGAATTTGTTCGAAATTCTGAAATAGTTAAAATCGAAATATTCCGAAAATCCGAAGTTCTAAACTCGGATTTTTCGATATTTCGAAAAATTCCTGTTTTTATTTTGAGCAAAGGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32787</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>253513</contig_pos>
        <strand></strand>
        <context>atttttatga[G/A]tttcgcggtg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAGGGCCCGCCCTAAAATCCTAAACCGCATATAGAAAACAATTTTTATGA</left_flank>
        <right_flank>TTTCGCGGTGTTTTCTAAACCAAACTTAGATATTTTGTTGAAAATATGAT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAAAACGGAGACGTTCTGTGTGTTTCTCCTATTTAAAAATATTCACTATGAGAATACTTTTCGTCTCCCAGACAAATGGAAAATACGTTCAACCATTATTTATTGTCCCAGTTGTGTGAGATTCAGTTTATTATTGAACAATAAAATTCCATGCGCATCAGGAACGCTCGTTTTTCGTTTTGTTCAATCTCCGTTCTCTTTAAAAATAATCTGGAACTCCTTGAATAATGTGTTTGTTTGTTAAATGTGAACCAAATATCAGATTTCAAGAAGCCCACATGGAATTCGAGAATGAACGAGTTTTTAAATATGTGCGAACTTCTACATATGACGTCGTCGTTTAAGATGAGGCAATGGAAAGAGATTAGAGTAGGGTTACTGTAGTTATGGGCGTTTCTGAATTACCAGACTCATCAAAATTATTATTAAAATCTGTGTCGATTTACGAGGGCCCGCCCTAAAATCCTAAACCGCATATAGAAAACAATTTTTATGAGTTTCGCGGTGTTTTCTAAACCAAACTTAGATATTTTGTTGAAAATATGATTCCTATACTATAGTTCTCTAGAATCTGTTTTTTATTGAAAAAACCAAACTTAATTGCGAAGATGGTCCAAACAAGGCAAAAGTTGAAATTGTATATTTTTGACTCGTATGTAGCAGAGATGTGCGTAAAATTTTTATTTTGCTAATTTGGTAAAACTTAAAATTTTACGGATTACAAGCTCTTAAAATCGTAAAATTCGTATACTAAACCATCTATCCAAATGGAAGAAAAACTGCAGTTTCATCTTTACTATTAACAATCACCAAATTCTGTGTGTGAGTTTGTGTGTCCGTTTGTTCCCGTATCACCTTCCCTAACGAAGTCCAGAATGAACCAAATTTTCCCAAATTTTCACAGATAACCCGAAATAGCAGCGAGATGATGCCCGAATATTTAATCTTTCGAAATTTTGTGTCTGACGTCTTCTGGAGACGTTCTTCTATTTCTACA</canonical>
            <polymorphic>TCAAAAAACGGAGACGTTCTGTGTGTTTCTCCTATTTAAAAATATTCACTATGAGAATACTTTTCGTCTCCCAGACAAATGGAAAATACGTTCAACCATTATTTATTGTCCCAGTTGTGTGAGATTCAGTTTATTATTGAACAATAAAATTCCATGCGCATCAGGAACGCTCGTTTTTCGTTTTGTTCAATCTCCGTTCTCTTTAAAAATAATCTGGAACTCCTTGAATAATGTGTTTGTTTGTTAAATGTGAACCAAATATCAGATTTCAAGAAGCCCACATGGAATTCGAGAATGAACGAGTTTTTAAATATGTGCGAACTTCTACATATGACGTCGTCGTTTAAGATGAGGCAATGGAAAGAGATTAGAGTAGGGTTACTGTAGTTATGGGCGTTTCTGAATTACCAGACTCATCAAAATTATTATTAAAATCTGTGTCGATTTACGAGGGCCCGCCCTAAAATCCTAAACCGCATATAGAAAACAATTTTTATGARTTTCGCGGTGTTTTCTAAACCAAACTTAGATATTTTGTTGAAAATATGATTCCTATACTATAGTTCTCTAGAATCTGTTTTTTATTGAAAAAACCAAACTTAATTGCGAAGATGGTCCAAACAAGGCAAAAGTTGAAATTGTATATTTTTGACTCGTATGTAGCAGAGATGTGCGTAAAATTTTTATTTTGCTAATTTGGTAAAACTTAAAATTTTACGGATTACAAGCTCTTAAAATCGTAAAATTCGTATACTAAACCATCTATCCAAATGGAAGAAAAACTGCAGTTTCATCTTTACTATTAACAATCACCAAATTCTGTGTGTGAGTTTGTGTGTCCGTTTGTTCCCGTATCACCTTCCCTAACGAAGTCCAGAATGAACCAAATTTTCCCAAATTTTCACAGATAACCCGAAATAGCAGCGAGATGATGCCCGAATATTTAATCTTTCGAAATTTTGTGTCTGACGTCTTCTGGAGACGTTCTTCTATTTCTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATTACCAGACTCATCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TACGCACATCTCTGCTACATAC</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>TGAATTACCAGACTCATCAAAATTATTATTAAAATCTGTGTCGATTTACGAGGGCCCGCCCTAAAATCCTAAACCGCATATAGAAAACAATTTTTATGAGTTTCGCGGTGTTTTCTAAACCAAACTTAGATATTTTGTTGAAAATATGATTCCTATACTATAGTTCTCTAGAATCTGTTTTTTATTGAAAAAACCAAACTTAATTGCGAAGATGGTCCAAACAAGGCAAAAGTTGAAATTGTATATTTTTGACTCGTATGTAGCAGAGATGTGCGTA</canonical_amplicon>
		<polymorphic_amplicon>TGAATTACCAGACTCATCAAAATTATTATTAAAATCTGTGTCGATTTACGAGGGCCCGCCCTAAAATCCTAAACCGCATATAGAAAACAATTTTTATGARTTTCGCGGTGTTTTCTAAACCAAACTTAGATATTTTGTTGAAAATATGATTCCTATACTATAGTTCTCTAGAATCTGTTTTTTATTGAAAAAACCAAACTTAATTGCGAAGATGGTCCAAACAAGGCAAAAGTTGAAATTGTATATTTTTGACTCGTATGTAGCAGAGATGTGCGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32788</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>256270</contig_pos>
        <strand>+</strand>
        <context>TATTTGTTTC[C/T]TGAAGAAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACATTTCCAGTTCCTTTTTTTCAAAATTGAAGCCTGCAATTATTTGTTTC</left_flank>
        <right_flank>TGAAGAAATAAGCAATCAAATTAATGAGTCCAGTCACGAGGGATCACGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAATTCAACTTCATTAAGGCCAAGTGTCCTTCCTTTGTTCGGAACATGGTTCCACACCTTATCCTATTTCCTTATTTTTTCTAAAAATTTATAGGCAAAACATGCCCGAAATTCTGGTCAACGAACGGCGCCCTTTTCGCATCGAAACACTCCATTTACATCTTCTACGTAACTCCGTTCTTTGCCTTCTGAAGTACTGCTCCATTTAATAAGCTCAAATTTCATTTCACGTTCTCCTATACCGTTTTTTCCAAGAATTGACCTATTTTAGAAAATTTTGTAATTCAATATTATATGTTTTAATAATATGTTTGTACATTTCATGAAGCAAACACAACCATGAAATGTTGAATGCGTCAACCTGATTTCCGGTAATTAAACGACTTTCAGAGCAATTTTCAGAACTTTATTTTTTACTTTTTTCCACCCGATTCTGTTGAGTTTTTACACATTTCCAGTTCCTTTTTTTCAAAATTGAAGCCTGCAATTATTTGTTTCCTGAAGAAATAAGCAATCAAATTAATGAGTCCAGTCACGAGGGATCACGATGCTCCAGAATCTCCCACATCCTCTTATTTCTATTTTTGCTATTCTGAAAACGTTTTTTTAAGTCTTCGGTTCCTTACCCACACCTCCAGAAAAGCCTATTTTTTGTCTAGTAAATAAGTAGAAAGGAATAGAAGAAAAGAGCAAAAATTATATTACAGCGGAATGGTGAAAAACACATGTTGAAAATATGAGAGATTTTATTGTTCTGGTTTTAAAATTTTCATAATGAGGTTTAGGATGTTATTTGAAAACTATCTCGGAAGAAATTCCATCATAAATATCCGGAATGTTATTTCCGGAATTTTTCGAAATATCGAAAATCCAAGTTTCTAAATTTTGGAATTTCGTAATATTCTAGTTTTTATAACTTCGGAATTTTGGATGATTCCGATGTTCAAAATTTTGGAATTCCGGATTTCATAGTTCTGCAATTTTGAAGCATTTCGATTT</canonical>
            <polymorphic>TCAATTCAACTTCATTAAGGCCAAGTGTCCTTCCTTTGTTCGGAACATGGTTCCACACCTTATCCTATTTCCTTATTTTTTCTAAAAATTTATAGGCAAAACATGCCCGAAATTCTGGTCAACGAACGGCGCCCTTTTCGCATCGAAACACTCCATTTACATCTTCTACGTAACTCCGTTCTTTGCCTTCTGAAGTACTGCTCCATTTAATAAGCTCAAATTTCATTTCACGTTCTCCTATACCGTTTTTTCCAAGAATTGACCTATTTTAGAAAATTTTGTAATTCAATATTATATGTTTTAATAATATGTTTGTACATTTCATGAAGCAAACACAACCATGAAATGTTGAATGCGTCAACCTGATTTCCGGTAATTAAACGACTTTCAGAGCAATTTTCAGAACTTTATTTTTTACTTTTTTCCACCCGATTCTGTTGAGTTTTTACACATTTCCAGTTCCTTTTTTTCAAAATTGAAGCCTGCAATTATTTGTTTCYTGAAGAAATAAGCAATCAAATTAATGAGTCCAGTCACGAGGGATCACGATGCTCCAGAATCTCCCACATCCTCTTATTTCTATTTTTGCTATTCTGAAAACGTTTTTTTAAGTCTTCGGTTCCTTACCCACACCTCCAGAAAAGCCTATTTTTTGTCTAGTAAATAAGTAGAAAGGAATAGAAGAAAAGAGCAAAAATTATATTACAGCGGAATGGTGAAAAACACATGTTGAAAATATGAGAGATTTTATTGTTCTGGTTTTAAAATTTTCATAATGAGGTTTAGGATGTTATTTGAAAACTATCTCGGAAGAAATTCCATCATAAATATCCGGAATGTTATTTCCGGAATTTTTCGAAATATCGAAAATCCAAGTTTCTAAATTTTGGAATTTCGTAATATTCTAGTTTTTATAACTTCGGAATTTTGGATGATTCCGATGTTCAAAATTTTGGAATTCCGGATTTCATAGTTCTGCAATTTTGAAGCATTTCGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACACATTTCCAGTTCCTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGCTCTTTTCTTCTATTCCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTACACATTTCCAGTTCCTTTTTTTCAAAATTGAAGCCTGCAATTATTTGTTTCCTGAAGAAATAAGCAATCAAATTAATGAGTCCAGTCACGAGGGATCACGATGCTCCAGAATCTCCCACATCCTCTTATTTCTATTTTTGCTATTCTGAAAACGTTTTTTTAAGTCTTCGGTTCCTTACCCACACCTCCAGAAAAGCCTATTTTTTGTCTAGTAAATAAGTAGAAAGGAATAGAAGAAAAGAGCA</canonical_amplicon>
		<polymorphic_amplicon>TTACACATTTCCAGTTCCTTTTTTTCAAAATTGAAGCCTGCAATTATTTGTTTCYTGAAGAAATAAGCAATCAAATTAATGAGTCCAGTCACGAGGGATCACGATGCTCCAGAATCTCCCACATCCTCTTATTTCTATTTTTGCTATTCTGAAAACGTTTTTTTAAGTCTTCGGTTCCTTACCCACACCTCCAGAAAAGCCTATTTTTTGTCTAGTAAATAAGTAGAAAGGAATAGAAGAAAAGAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32789</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>256384</contig_pos>
        <strand>+</strand>
        <context>TTTTTTAAGT[A/C]TTCGGTTCCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCACATCCTCTTATTTCTATTTTTGCTATTCTGAAAACGTTTTTTTAAGT</left_flank>
        <right_flank>TTCGGTTCCTTACCCACACCTCCAGAAAAGCCTATTTTTTGTCTAGTAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGTCAACGAACGGCGCCCTTTTCGCATCGAAACACTCCATTTACATCTTCTACGTAACTCCGTTCTTTGCCTTCTGAAGTACTGCTCCATTTAATAAGCTCAAATTTCATTTCACGTTCTCCTATACCGTTTTTTCCAAGAATTGACCTATTTTAGAAAATTTTGTAATTCAATATTATATGTTTTAATAATATGTTTGTACATTTCATGAAGCAAACACAACCATGAAATGTTGAATGCGTCAACCTGATTTCCGGTAATTAAACGACTTTCAGAGCAATTTTCAGAACTTTATTTTTTACTTTTTTCCACCCGATTCTGTTGAGTTTTTACACATTTCCAGTTCCTTTTTTTCAAAATTGAAGCCTGCAATTATTTGTTTCCTGAAGAAATAAGCAATCAAATTAATGAGTCCAGTCACGAGGGATCACGATGCTCCAGAATCTCCCACATCCTCTTATTTCTATTTTTGCTATTCTGAAAACGTTTTTTTAAGTCTTCGGTTCCTTACCCACACCTCCAGAAAAGCCTATTTTTTGTCTAGTAAATAAGTAGAAAGGAATAGAAGAAAAGAGCAAAAATTATATTACAGCGGAATGGTGAAAAACACATGTTGAAAATATGAGAGATTTTATTGTTCTGGTTTTAAAATTTTCATAATGAGGTTTAGGATGTTATTTGAAAACTATCTCGGAAGAAATTCCATCATAAATATCCGGAATGTTATTTCCGGAATTTTTCGAAATATCGAAAATCCAAGTTTCTAAATTTTGGAATTTCGTAATATTCTAGTTTTTATAACTTCGGAATTTTGGATGATTCCGATGTTCAAAATTTTGGAATTCCGGATTTCATAGTTCTGCAATTTTGAAGCATTTCGATTTGCATAATCCGGAATTTCGGAATATTCCAATTTTAAAAATTTCGGAGTTTTGGAATACTCCGATTTGCAAATTTTCGGAATTTCTGAATTTCGTAACTTCAGTATATTCCAAATT</canonical>
            <polymorphic>CTGGTCAACGAACGGCGCCCTTTTCGCATCGAAACACTCCATTTACATCTTCTACGTAACTCCGTTCTTTGCCTTCTGAAGTACTGCTCCATTTAATAAGCTCAAATTTCATTTCACGTTCTCCTATACCGTTTTTTCCAAGAATTGACCTATTTTAGAAAATTTTGTAATTCAATATTATATGTTTTAATAATATGTTTGTACATTTCATGAAGCAAACACAACCATGAAATGTTGAATGCGTCAACCTGATTTCCGGTAATTAAACGACTTTCAGAGCAATTTTCAGAACTTTATTTTTTACTTTTTTCCACCCGATTCTGTTGAGTTTTTACACATTTCCAGTTCCTTTTTTTCAAAATTGAAGCCTGCAATTATTTGTTTCCTGAAGAAATAAGCAATCAAATTAATGAGTCCAGTCACGAGGGATCACGATGCTCCAGAATCTCCCACATCCTCTTATTTCTATTTTTGCTATTCTGAAAACGTTTTTTTAAGTMTTCGGTTCCTTACCCACACCTCCAGAAAAGCCTATTTTTTGTCTAGTAAATAAGTAGAAAGGAATAGAAGAAAAGAGCAAAAATTATATTACAGCGGAATGGTGAAAAACACATGTTGAAAATATGAGAGATTTTATTGTTCTGGTTTTAAAATTTTCATAATGAGGTTTAGGATGTTATTTGAAAACTATCTCGGAAGAAATTCCATCATAAATATCCGGAATGTTATTTCCGGAATTTTTCGAAATATCGAAAATCCAAGTTTCTAAATTTTGGAATTTCGTAATATTCTAGTTTTTATAACTTCGGAATTTTGGATGATTCCGATGTTCAAAATTTTGGAATTCCGGATTTCATAGTTCTGCAATTTTGAAGCATTTCGATTTGCATAATCCGGAATTTCGGAATATTCCAATTTTAAAAATTTCGGAGTTTTGGAATACTCCGATTTGCAAATTTTCGGAATTTCTGAATTTCGTAACTTCAGTATATTCCAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATCAAATTAATGAGTCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>AACCAGAACAATAAAATCTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAATCAAATTAATGAGTCCAGTCACGAGGGATCACGATGCTCCAGAATCTCCCACATCCTCTTATTTCTATTTTTGCTATTCTGAAAACGTTTTTTTAAGTCTTCGGTTCCTTACCCACACCTCCAGAAAAGCCTATTTTTTGTCTAGTAAATAAGTAGAAAGGAATAGAAGAAAAGAGCAAAAATTATATTACAGCGGAATGGTGAAAAACACATGTTGAAAATATGAGAGATTTTATTGTTCTGGTT</canonical_amplicon>
		<polymorphic_amplicon>CAATCAAATTAATGAGTCCAGTCACGAGGGATCACGATGCTCCAGAATCTCCCACATCCTCTTATTTCTATTTTTGCTATTCTGAAAACGTTTTTTTAAGTMTTCGGTTCCTTACCCACACCTCCAGAAAAGCCTATTTTTTGTCTAGTAAATAAGTAGAAAGGAATAGAAGAAAAGAGCAAAAATTATATTACAGCGGAATGGTGAAAAACACATGTTGAAAATATGAGAGATTTTATTGTTCTGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32790</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>256427</contig_pos>
        <strand>+</strand>
        <context>TATTTTTTGT[C/T]TAGTAAATAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTAAGTCTTCGGTTCCTTACCCACACCTCCAGAAAAGCCTATTTTTTGT</left_flank>
        <right_flank>TAGTAAATAAGTAGAAAGGAATAGAAGAAAAGAGCAAAAATTATATTACA</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACATCTTCTACGTAACTCCGTTCTTTGCCTTCTGAAGTACTGCTCCATTTAATAAGCTCAAATTTCATTTCACGTTCTCCTATACCGTTTTTTCCAAGAATTGACCTATTTTAGAAAATTTTGTAATTCAATATTATATGTTTTAATAATATGTTTGTACATTTCATGAAGCAAACACAACCATGAAATGTTGAATGCGTCAACCTGATTTCCGGTAATTAAACGACTTTCAGAGCAATTTTCAGAACTTTATTTTTTACTTTTTTCCACCCGATTCTGTTGAGTTTTTACACATTTCCAGTTCCTTTTTTTCAAAATTGAAGCCTGCAATTATTTGTTTCCTGAAGAAATAAGCAATCAAATTAATGAGTCCAGTCACGAGGGATCACGATGCTCCAGAATCTCCCACATCCTCTTATTTCTATTTTTGCTATTCTGAAAACGTTTTTTTAAGTCTTCGGTTCCTTACCCACACCTCCAGAAAAGCCTATTTTTTGTCTAGTAAATAAGTAGAAAGGAATAGAAGAAAAGAGCAAAAATTATATTACAGCGGAATGGTGAAAAACACATGTTGAAAATATGAGAGATTTTATTGTTCTGGTTTTAAAATTTTCATAATGAGGTTTAGGATGTTATTTGAAAACTATCTCGGAAGAAATTCCATCATAAATATCCGGAATGTTATTTCCGGAATTTTTCGAAATATCGAAAATCCAAGTTTCTAAATTTTGGAATTTCGTAATATTCTAGTTTTTATAACTTCGGAATTTTGGATGATTCCGATGTTCAAAATTTTGGAATTCCGGATTTCATAGTTCTGCAATTTTGAAGCATTTCGATTTGCATAATCCGGAATTTCGGAATATTCCAATTTTAAAAATTTCGGAGTTTTGGAATACTCCGATTTGCAAATTTTCGGAATTTCTGAATTTCGTAACTTCAGTATATTCCAAATTAAACATTTTCGGAATTTCGGAATTTCGGAACATTCCAATGTTT</canonical>
            <polymorphic>TACATCTTCTACGTAACTCCGTTCTTTGCCTTCTGAAGTACTGCTCCATTTAATAAGCTCAAATTTCATTTCACGTTCTCCTATACCGTTTTTTCCAAGAATTGACCTATTTTAGAAAATTTTGTAATTCAATATTATATGTTTTAATAATATGTTTGTACATTTCATGAAGCAAACACAACCATGAAATGTTGAATGCGTCAACCTGATTTCCGGTAATTAAACGACTTTCAGAGCAATTTTCAGAACTTTATTTTTTACTTTTTTCCACCCGATTCTGTTGAGTTTTTACACATTTCCAGTTCCTTTTTTTCAAAATTGAAGCCTGCAATTATTTGTTTCCTGAAGAAATAAGCAATCAAATTAATGAGTCCAGTCACGAGGGATCACGATGCTCCAGAATCTCCCACATCCTCTTATTTCTATTTTTGCTATTCTGAAAACGTTTTTTTAAGTCTTCGGTTCCTTACCCACACCTCCAGAAAAGCCTATTTTTTGTYTAGTAAATAAGTAGAAAGGAATAGAAGAAAAGAGCAAAAATTATATTACAGCGGAATGGTGAAAAACACATGTTGAAAATATGAGAGATTTTATTGTTCTGGTTTTAAAATTTTCATAATGAGGTTTAGGATGTTATTTGAAAACTATCTCGGAAGAAATTCCATCATAAATATCCGGAATGTTATTTCCGGAATTTTTCGAAATATCGAAAATCCAAGTTTCTAAATTTTGGAATTTCGTAATATTCTAGTTTTTATAACTTCGGAATTTTGGATGATTCCGATGTTCAAAATTTTGGAATTCCGGATTTCATAGTTCTGCAATTTTGAAGCATTTCGATTTGCATAATCCGGAATTTCGGAATATTCCAATTTTAAAAATTTCGGAGTTTTGGAATACTCCGATTTGCAAATTTTCGGAATTTCTGAATTTCGTAACTTCAGTATATTCCAAATTAAACATTTTCGGAATTTCGGAATTTCGGAACATTCCAATGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 252 248</canonical_bands>
                <polymorphic_bands>748 252</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATCAAATTAATGAGTCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>AACCAGAACAATAAAATCTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAATCAAATTAATGAGTCCAGTCACGAGGGATCACGATGCTCCAGAATCTCCCACATCCTCTTATTTCTATTTTTGCTATTCTGAAAACGTTTTTTTAAGTCTTCGGTTCCTTACCCACACCTCCAGAAAAGCCTATTTTTTGTCTAGTAAATAAGTAGAAAGGAATAGAAGAAAAGAGCAAAAATTATATTACAGCGGAATGGTGAAAAACACATGTTGAAAATATGAGAGATTTTATTGTTCTGGTT</canonical_amplicon>
		<polymorphic_amplicon>CAATCAAATTAATGAGTCCAGTCACGAGGGATCACGATGCTCCAGAATCTCCCACATCCTCTTATTTCTATTTTTGCTATTCTGAAAACGTTTTTTTAAGTCTTCGGTTCCTTACCCACACCTCCAGAAAAGCCTATTTTTTGTYTAGTAAATAAGTAGAAAGGAATAGAAGAAAAGAGCAAAAATTATATTACAGCGGAATGGTGAAAAACACATGTTGAAAATATGAGAGATTTTATTGTTCTGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32791</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>256440</contig_pos>
        <strand>+</strand>
        <context>GTAAATAAGT[A/C]GAAAGGAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCCTTACCCACACCTCCAGAAAAGCCTATTTTTTGTCTAGTAAATAAGT</left_flank>
        <right_flank>GAAAGGAATAGAAGAAAAGAGCAAAAATTATATTACAGCGGAATGGTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACTCCGTTCTTTGCCTTCTGAAGTACTGCTCCATTTAATAAGCTCAAATTTCATTTCACGTTCTCCTATACCGTTTTTTCCAAGAATTGACCTATTTTAGAAAATTTTGTAATTCAATATTATATGTTTTAATAATATGTTTGTACATTTCATGAAGCAAACACAACCATGAAATGTTGAATGCGTCAACCTGATTTCCGGTAATTAAACGACTTTCAGAGCAATTTTCAGAACTTTATTTTTTACTTTTTTCCACCCGATTCTGTTGAGTTTTTACACATTTCCAGTTCCTTTTTTTCAAAATTGAAGCCTGCAATTATTTGTTTCCTGAAGAAATAAGCAATCAAATTAATGAGTCCAGTCACGAGGGATCACGATGCTCCAGAATCTCCCACATCCTCTTATTTCTATTTTTGCTATTCTGAAAACGTTTTTTTAAGTCTTCGGTTCCTTACCCACACCTCCAGAAAAGCCTATTTTTTGTCTAGTAAATAAGTAGAAAGGAATAGAAGAAAAGAGCAAAAATTATATTACAGCGGAATGGTGAAAAACACATGTTGAAAATATGAGAGATTTTATTGTTCTGGTTTTAAAATTTTCATAATGAGGTTTAGGATGTTATTTGAAAACTATCTCGGAAGAAATTCCATCATAAATATCCGGAATGTTATTTCCGGAATTTTTCGAAATATCGAAAATCCAAGTTTCTAAATTTTGGAATTTCGTAATATTCTAGTTTTTATAACTTCGGAATTTTGGATGATTCCGATGTTCAAAATTTTGGAATTCCGGATTTCATAGTTCTGCAATTTTGAAGCATTTCGATTTGCATAATCCGGAATTTCGGAATATTCCAATTTTAAAAATTTCGGAGTTTTGGAATACTCCGATTTGCAAATTTTCGGAATTTCTGAATTTCGTAACTTCAGTATATTCCAAATTAAACATTTTCGGAATTTCGGAATTTCGGAACATTCCAATGTTTCAAAAAATTCGGA</canonical>
            <polymorphic>TAACTCCGTTCTTTGCCTTCTGAAGTACTGCTCCATTTAATAAGCTCAAATTTCATTTCACGTTCTCCTATACCGTTTTTTCCAAGAATTGACCTATTTTAGAAAATTTTGTAATTCAATATTATATGTTTTAATAATATGTTTGTACATTTCATGAAGCAAACACAACCATGAAATGTTGAATGCGTCAACCTGATTTCCGGTAATTAAACGACTTTCAGAGCAATTTTCAGAACTTTATTTTTTACTTTTTTCCACCCGATTCTGTTGAGTTTTTACACATTTCCAGTTCCTTTTTTTCAAAATTGAAGCCTGCAATTATTTGTTTCCTGAAGAAATAAGCAATCAAATTAATGAGTCCAGTCACGAGGGATCACGATGCTCCAGAATCTCCCACATCCTCTTATTTCTATTTTTGCTATTCTGAAAACGTTTTTTTAAGTCTTCGGTTCCTTACCCACACCTCCAGAAAAGCCTATTTTTTGTCTAGTAAATAAGTMGAAAGGAATAGAAGAAAAGAGCAAAAATTATATTACAGCGGAATGGTGAAAAACACATGTTGAAAATATGAGAGATTTTATTGTTCTGGTTTTAAAATTTTCATAATGAGGTTTAGGATGTTATTTGAAAACTATCTCGGAAGAAATTCCATCATAAATATCCGGAATGTTATTTCCGGAATTTTTCGAAATATCGAAAATCCAAGTTTCTAAATTTTGGAATTTCGTAATATTCTAGTTTTTATAACTTCGGAATTTTGGATGATTCCGATGTTCAAAATTTTGGAATTCCGGATTTCATAGTTCTGCAATTTTGAAGCATTTCGATTTGCATAATCCGGAATTTCGGAATATTCCAATTTTAAAAATTTCGGAGTTTTGGAATACTCCGATTTGCAAATTTTCGGAATTTCTGAATTTCGTAACTTCAGTATATTCCAAATTAAACATTTTCGGAATTTCGGAATTTCGGAACATTCCAATGTTTCAAAAAATTCGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATCAAATTAATGAGTCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>AACCAGAACAATAAAATCTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAATCAAATTAATGAGTCCAGTCACGAGGGATCACGATGCTCCAGAATCTCCCACATCCTCTTATTTCTATTTTTGCTATTCTGAAAACGTTTTTTTAAGTCTTCGGTTCCTTACCCACACCTCCAGAAAAGCCTATTTTTTGTCTAGTAAATAAGTAGAAAGGAATAGAAGAAAAGAGCAAAAATTATATTACAGCGGAATGGTGAAAAACACATGTTGAAAATATGAGAGATTTTATTGTTCTGGTT</canonical_amplicon>
		<polymorphic_amplicon>CAATCAAATTAATGAGTCCAGTCACGAGGGATCACGATGCTCCAGAATCTCCCACATCCTCTTATTTCTATTTTTGCTATTCTGAAAACGTTTTTTTAAGTCTTCGGTTCCTTACCCACACCTCCAGAAAAGCCTATTTTTTGTCTAGTAAATAAGTMGAAAGGAATAGAAGAAAAGAGCAAAAATTATATTACAGCGGAATGGTGAAAAACACATGTTGAAAATATGAGAGATTTTATTGTTCTGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32792</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>256583</contig_pos>
        <strand>+</strand>
        <context>TATCTCGGAA[A/G]AAATTCCATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAAATTTTCATAATGAGGTTTAGGATGTTATTTGAAAACTATCTCGGAA</left_flank>
        <right_flank>AAATTCCATCATAAATATCCGGAATGTTATTTCCGGAATTTTTCGAAATA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTACATTTCATGAAGCAAACACAACCATGAAATGTTGAATGCGTCAACCTGATTTCCGGTAATTAAACGACTTTCAGAGCAATTTTCAGAACTTTATTTTTTACTTTTTTCCACCCGATTCTGTTGAGTTTTTACACATTTCCAGTTCCTTTTTTTCAAAATTGAAGCCTGCAATTATTTGTTTCCTGAAGAAATAAGCAATCAAATTAATGAGTCCAGTCACGAGGGATCACGATGCTCCAGAATCTCCCACATCCTCTTATTTCTATTTTTGCTATTCTGAAAACGTTTTTTTAAGTCTTCGGTTCCTTACCCACACCTCCAGAAAAGCCTATTTTTTGTCTAGTAAATAAGTAGAAAGGAATAGAAGAAAAGAGCAAAAATTATATTACAGCGGAATGGTGAAAAACACATGTTGAAAATATGAGAGATTTTATTGTTCTGGTTTTAAAATTTTCATAATGAGGTTTAGGATGTTATTTGAAAACTATCTCGGAAGAAATTCCATCATAAATATCCGGAATGTTATTTCCGGAATTTTTCGAAATATCGAAAATCCAAGTTTCTAAATTTTGGAATTTCGTAATATTCTAGTTTTTATAACTTCGGAATTTTGGATGATTCCGATGTTCAAAATTTTGGAATTCCGGATTTCATAGTTCTGCAATTTTGAAGCATTTCGATTTGCATAATCCGGAATTTCGGAATATTCCAATTTTAAAAATTTCGGAGTTTTGGAATACTCCGATTTGCAAATTTTCGGAATTTCTGAATTTCGTAACTTCAGTATATTCCAAATTAAACATTTTCGGAATTTCGGAATTTCGGAACATTCCAATGTTTCAAAAAATTCGGAATTTCTGCATATTCCAATTTGCAAATTTAAGAATTTTGAAATATTCCGATTTTCAAAACTTTAGAAAAAGTATAATTTTCTACTCCTAACCTTAGTTCTTCTGGTTTGAGTCTCTGAATTTGTCTCAAAACTAGATTATGTTA</canonical>
            <polymorphic>TGTACATTTCATGAAGCAAACACAACCATGAAATGTTGAATGCGTCAACCTGATTTCCGGTAATTAAACGACTTTCAGAGCAATTTTCAGAACTTTATTTTTTACTTTTTTCCACCCGATTCTGTTGAGTTTTTACACATTTCCAGTTCCTTTTTTTCAAAATTGAAGCCTGCAATTATTTGTTTCCTGAAGAAATAAGCAATCAAATTAATGAGTCCAGTCACGAGGGATCACGATGCTCCAGAATCTCCCACATCCTCTTATTTCTATTTTTGCTATTCTGAAAACGTTTTTTTAAGTCTTCGGTTCCTTACCCACACCTCCAGAAAAGCCTATTTTTTGTCTAGTAAATAAGTAGAAAGGAATAGAAGAAAAGAGCAAAAATTATATTACAGCGGAATGGTGAAAAACACATGTTGAAAATATGAGAGATTTTATTGTTCTGGTTTTAAAATTTTCATAATGAGGTTTAGGATGTTATTTGAAAACTATCTCGGAARAAATTCCATCATAAATATCCGGAATGTTATTTCCGGAATTTTTCGAAATATCGAAAATCCAAGTTTCTAAATTTTGGAATTTCGTAATATTCTAGTTTTTATAACTTCGGAATTTTGGATGATTCCGATGTTCAAAATTTTGGAATTCCGGATTTCATAGTTCTGCAATTTTGAAGCATTTCGATTTGCATAATCCGGAATTTCGGAATATTCCAATTTTAAAAATTTCGGAGTTTTGGAATACTCCGATTTGCAAATTTTCGGAATTTCTGAATTTCGTAACTTCAGTATATTCCAAATTAAACATTTTCGGAATTTCGGAATTTCGGAACATTCCAATGTTTCAAAAAATTCGGAATTTCTGCATATTCCAATTTGCAAATTTAAGAATTTTGAAATATTCCGATTTTCAAAACTTTAGAAAAAGTATAATTTTCTACTCCTAACCTTAGTTCTTCTGGTTTGAGTCTCTGAATTTGTCTCAAAACTAGATTATGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTAAAATTTTCATAATGAGGTT</pcr_primer_p1>
		<pcr_primer_p2>CCAGAAGAACTAAGGTTAGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>516</pcr_amplicon_size>
		<canonical_amplicon>GTTTTAAAATTTTCATAATGAGGTTTAGGATGTTATTTGAAAACTATCTCGGAAGAAATTCCATCATAAATATCCGGAATGTTATTTCCGGAATTTTTCGAAATATCGAAAATCCAAGTTTCTAAATTTTGGAATTTCGTAATATTCTAGTTTTTATAACTTCGGAATTTTGGATGATTCCGATGTTCAAAATTTTGGAATTCCGGATTTCATAGTTCTGCAATTTTGAAGCATTTCGATTTGCATAATCCGGAATTTCGGAATATTCCAATTTTAAAAATTTCGGAGTTTTGGAATACTCCGATTTGCAAATTTTCGGAATTTCTGAATTTCGTAACTTCAGTATATTCCAAATTAAACATTTTCGGAATTTCGGAATTTCGGAACATTCCAATGTTTCAAAAAATTCGGAATTTCTGCATATTCCAATTTGCAAATTTAAGAATTTTGAAATATTCCGATTTTCAAAACTTTAGAAAAAGTATAATTTTCTACTCCTAACCTTAGTTCTTCTGG</canonical_amplicon>
		<polymorphic_amplicon>GTTTTAAAATTTTCATAATGAGGTTTAGGATGTTATTTGAAAACTATCTCGGAARAAATTCCATCATAAATATCCGGAATGTTATTTCCGGAATTTTTCGAAATATCGAAAATCCAAGTTTCTAAATTTTGGAATTTCGTAATATTCTAGTTTTTATAACTTCGGAATTTTGGATGATTCCGATGTTCAAAATTTTGGAATTCCGGATTTCATAGTTCTGCAATTTTGAAGCATTTCGATTTGCATAATCCGGAATTTCGGAATATTCCAATTTTAAAAATTTCGGAGTTTTGGAATACTCCGATTTGCAAATTTTCGGAATTTCTGAATTTCGTAACTTCAGTATATTCCAAATTAAACATTTTCGGAATTTCGGAATTTCGGAACATTCCAATGTTTCAAAAAATTCGGAATTTCTGCATATTCCAATTTGCAAATTTAAGAATTTTGAAATATTCCGATTTTCAAAACTTTAGAAAAAGTATAATTTTCTACTCCTAACCTTAGTTCTTCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32793</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>256609</contig_pos>
        <strand></strand>
        <context>tatccggaat[G/T]ttatttccgg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTTATTTGAAAACTATCTCGGAAGAAATTCCATCATAAATATCCGGAAT</left_flank>
        <right_flank>TTATTTCCGGAATTTTTCGAAATATCGAAAATCCAAGTTTCTAAATTTTG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGAAATGTTGAATGCGTCAACCTGATTTCCGGTAATTAAACGACTTTCAGAGCAATTTTCAGAACTTTATTTTTTACTTTTTTCCACCCGATTCTGTTGAGTTTTTACACATTTCCAGTTCCTTTTTTTCAAAATTGAAGCCTGCAATTATTTGTTTCCTGAAGAAATAAGCAATCAAATTAATGAGTCCAGTCACGAGGGATCACGATGCTCCAGAATCTCCCACATCCTCTTATTTCTATTTTTGCTATTCTGAAAACGTTTTTTTAAGTCTTCGGTTCCTTACCCACACCTCCAGAAAAGCCTATTTTTTGTCTAGTAAATAAGTAGAAAGGAATAGAAGAAAAGAGCAAAAATTATATTACAGCGGAATGGTGAAAAACACATGTTGAAAATATGAGAGATTTTATTGTTCTGGTTTTAAAATTTTCATAATGAGGTTTAGGATGTTATTTGAAAACTATCTCGGAAGAAATTCCATCATAAATATCCGGAATGTTATTTCCGGAATTTTTCGAAATATCGAAAATCCAAGTTTCTAAATTTTGGAATTTCGTAATATTCTAGTTTTTATAACTTCGGAATTTTGGATGATTCCGATGTTCAAAATTTTGGAATTCCGGATTTCATAGTTCTGCAATTTTGAAGCATTTCGATTTGCATAATCCGGAATTTCGGAATATTCCAATTTTAAAAATTTCGGAGTTTTGGAATACTCCGATTTGCAAATTTTCGGAATTTCTGAATTTCGTAACTTCAGTATATTCCAAATTAAACATTTTCGGAATTTCGGAATTTCGGAACATTCCAATGTTTCAAAAAATTCGGAATTTCTGCATATTCCAATTTGCAAATTTAAGAATTTTGAAATATTCCGATTTTCAAAACTTTAGAAAAAGTATAATTTTCTACTCCTAACCTTAGTTCTTCTGGTTTGAGTCTCTGAATTTGTCTCAAAACTAGATTATGTTACATTTTCGGATTGTCATTCACCCCCC</canonical>
            <polymorphic>CATGAAATGTTGAATGCGTCAACCTGATTTCCGGTAATTAAACGACTTTCAGAGCAATTTTCAGAACTTTATTTTTTACTTTTTTCCACCCGATTCTGTTGAGTTTTTACACATTTCCAGTTCCTTTTTTTCAAAATTGAAGCCTGCAATTATTTGTTTCCTGAAGAAATAAGCAATCAAATTAATGAGTCCAGTCACGAGGGATCACGATGCTCCAGAATCTCCCACATCCTCTTATTTCTATTTTTGCTATTCTGAAAACGTTTTTTTAAGTCTTCGGTTCCTTACCCACACCTCCAGAAAAGCCTATTTTTTGTCTAGTAAATAAGTAGAAAGGAATAGAAGAAAAGAGCAAAAATTATATTACAGCGGAATGGTGAAAAACACATGTTGAAAATATGAGAGATTTTATTGTTCTGGTTTTAAAATTTTCATAATGAGGTTTAGGATGTTATTTGAAAACTATCTCGGAAGAAATTCCATCATAAATATCCGGAATKTTATTTCCGGAATTTTTCGAAATATCGAAAATCCAAGTTTCTAAATTTTGGAATTTCGTAATATTCTAGTTTTTATAACTTCGGAATTTTGGATGATTCCGATGTTCAAAATTTTGGAATTCCGGATTTCATAGTTCTGCAATTTTGAAGCATTTCGATTTGCATAATCCGGAATTTCGGAATATTCCAATTTTAAAAATTTCGGAGTTTTGGAATACTCCGATTTGCAAATTTTCGGAATTTCTGAATTTCGTAACTTCAGTATATTCCAAATTAAACATTTTCGGAATTTCGGAATTTCGGAACATTCCAATGTTTCAAAAAATTCGGAATTTCTGCATATTCCAATTTGCAAATTTAAGAATTTTGAAATATTCCGATTTTCAAAACTTTAGAAAAAGTATAATTTTCTACTCCTAACCTTAGTTCTTCTGGTTTGAGTCTCTGAATTTGTCTCAAAACTAGATTATGTTACATTTTCGGATTGTCATTCACCCCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTAGGATGTTATTTGAAAACT</pcr_primer_p1>
		<pcr_primer_p2>CCAGAAGAACTAAGGTTAGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>495</pcr_amplicon_size>
		<canonical_amplicon>GGTTTAGGATGTTATTTGAAAACTATCTCGGAAGAAATTCCATCATAAATATCCGGAATGTTATTTCCGGAATTTTTCGAAATATCGAAAATCCAAGTTTCTAAATTTTGGAATTTCGTAATATTCTAGTTTTTATAACTTCGGAATTTTGGATGATTCCGATGTTCAAAATTTTGGAATTCCGGATTTCATAGTTCTGCAATTTTGAAGCATTTCGATTTGCATAATCCGGAATTTCGGAATATTCCAATTTTAAAAATTTCGGAGTTTTGGAATACTCCGATTTGCAAATTTTCGGAATTTCTGAATTTCGTAACTTCAGTATATTCCAAATTAAACATTTTCGGAATTTCGGAATTTCGGAACATTCCAATGTTTCAAAAAATTCGGAATTTCTGCATATTCCAATTTGCAAATTTAAGAATTTTGAAATATTCCGATTTTCAAAACTTTAGAAAAAGTATAATTTTCTACTCCTAACCTTAGTTCTTCTGG</canonical_amplicon>
		<polymorphic_amplicon>GGTTTAGGATGTTATTTGAAAACTATCTCGGAAGAAATTCCATCATAAATATCCGGAATKTTATTTCCGGAATTTTTCGAAATATCGAAAATCCAAGTTTCTAAATTTTGGAATTTCGTAATATTCTAGTTTTTATAACTTCGGAATTTTGGATGATTCCGATGTTCAAAATTTTGGAATTCCGGATTTCATAGTTCTGCAATTTTGAAGCATTTCGATTTGCATAATCCGGAATTTCGGAATATTCCAATTTTAAAAATTTCGGAGTTTTGGAATACTCCGATTTGCAAATTTTCGGAATTTCTGAATTTCGTAACTTCAGTATATTCCAAATTAAACATTTTCGGAATTTCGGAATTTCGGAACATTCCAATGTTTCAAAAAATTCGGAATTTCTGCATATTCCAATTTGCAAATTTAAGAATTTTGAAATATTCCGATTTTCAAAACTTTAGAAAAAGTATAATTTTCTACTCCTAACCTTAGTTCTTCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32794</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>256676</contig_pos>
        <strand></strand>
        <context>cgtaatattc[T/C]agtttttata</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCGAAATATCGAAAATCCAAGTTTCTAAATTTTGGAATTTCGTAATATTC</left_flank>
        <right_flank>AGTTTTTATAACTTCGGAATTTTGGATGATTCCGATGTTCAAAATTTTGG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTATTTTTTACTTTTTTCCACCCGATTCTGTTGAGTTTTTACACATTTCCAGTTCCTTTTTTTCAAAATTGAAGCCTGCAATTATTTGTTTCCTGAAGAAATAAGCAATCAAATTAATGAGTCCAGTCACGAGGGATCACGATGCTCCAGAATCTCCCACATCCTCTTATTTCTATTTTTGCTATTCTGAAAACGTTTTTTTAAGTCTTCGGTTCCTTACCCACACCTCCAGAAAAGCCTATTTTTTGTCTAGTAAATAAGTAGAAAGGAATAGAAGAAAAGAGCAAAAATTATATTACAGCGGAATGGTGAAAAACACATGTTGAAAATATGAGAGATTTTATTGTTCTGGTTTTAAAATTTTCATAATGAGGTTTAGGATGTTATTTGAAAACTATCTCGGAAGAAATTCCATCATAAATATCCGGAATGTTATTTCCGGAATTTTTCGAAATATCGAAAATCCAAGTTTCTAAATTTTGGAATTTCGTAATATTCTAGTTTTTATAACTTCGGAATTTTGGATGATTCCGATGTTCAAAATTTTGGAATTCCGGATTTCATAGTTCTGCAATTTTGAAGCATTTCGATTTGCATAATCCGGAATTTCGGAATATTCCAATTTTAAAAATTTCGGAGTTTTGGAATACTCCGATTTGCAAATTTTCGGAATTTCTGAATTTCGTAACTTCAGTATATTCCAAATTAAACATTTTCGGAATTTCGGAATTTCGGAACATTCCAATGTTTCAAAAAATTCGGAATTTCTGCATATTCCAATTTGCAAATTTAAGAATTTTGAAATATTCCGATTTTCAAAACTTTAGAAAAAGTATAATTTTCTACTCCTAACCTTAGTTCTTCTGGTTTGAGTCTCTGAATTTGTCTCAAAACTAGATTATGTTACATTTTCGGATTGTCATTCACCCCCCCCCCCCCCCCCCATTCTATTTTCCAATTAATTTTCCATGGTCACTTCATTTTTTTGTGTTTCTATCA</canonical>
            <polymorphic>TTTATTTTTTACTTTTTTCCACCCGATTCTGTTGAGTTTTTACACATTTCCAGTTCCTTTTTTTCAAAATTGAAGCCTGCAATTATTTGTTTCCTGAAGAAATAAGCAATCAAATTAATGAGTCCAGTCACGAGGGATCACGATGCTCCAGAATCTCCCACATCCTCTTATTTCTATTTTTGCTATTCTGAAAACGTTTTTTTAAGTCTTCGGTTCCTTACCCACACCTCCAGAAAAGCCTATTTTTTGTCTAGTAAATAAGTAGAAAGGAATAGAAGAAAAGAGCAAAAATTATATTACAGCGGAATGGTGAAAAACACATGTTGAAAATATGAGAGATTTTATTGTTCTGGTTTTAAAATTTTCATAATGAGGTTTAGGATGTTATTTGAAAACTATCTCGGAAGAAATTCCATCATAAATATCCGGAATGTTATTTCCGGAATTTTTCGAAATATCGAAAATCCAAGTTTCTAAATTTTGGAATTTCGTAATATTCYAGTTTTTATAACTTCGGAATTTTGGATGATTCCGATGTTCAAAATTTTGGAATTCCGGATTTCATAGTTCTGCAATTTTGAAGCATTTCGATTTGCATAATCCGGAATTTCGGAATATTCCAATTTTAAAAATTTCGGAGTTTTGGAATACTCCGATTTGCAAATTTTCGGAATTTCTGAATTTCGTAACTTCAGTATATTCCAAATTAAACATTTTCGGAATTTCGGAATTTCGGAACATTCCAATGTTTCAAAAAATTCGGAATTTCTGCATATTCCAATTTGCAAATTTAAGAATTTTGAAATATTCCGATTTTCAAAACTTTAGAAAAAGTATAATTTTCTACTCCTAACCTTAGTTCTTCTGGTTTGAGTCTCTGAATTTGTCTCAAAACTAGATTATGTTACATTTTCGGATTGTCATTCACCCCCCCCCCCCCCCCCCATTCTATTTTCCAATTAATTTTCCATGGTCACTTCATTTTTTTGTGTTTCTATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>396 251 248 105</canonical_bands>
                <polymorphic_bands>644 251 105</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTAGGATGTTATTTGAAAACT</pcr_primer_p1>
		<pcr_primer_p2>CCAGAAGAACTAAGGTTAGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>495</pcr_amplicon_size>
		<canonical_amplicon>GGTTTAGGATGTTATTTGAAAACTATCTCGGAAGAAATTCCATCATAAATATCCGGAATGTTATTTCCGGAATTTTTCGAAATATCGAAAATCCAAGTTTCTAAATTTTGGAATTTCGTAATATTCTAGTTTTTATAACTTCGGAATTTTGGATGATTCCGATGTTCAAAATTTTGGAATTCCGGATTTCATAGTTCTGCAATTTTGAAGCATTTCGATTTGCATAATCCGGAATTTCGGAATATTCCAATTTTAAAAATTTCGGAGTTTTGGAATACTCCGATTTGCAAATTTTCGGAATTTCTGAATTTCGTAACTTCAGTATATTCCAAATTAAACATTTTCGGAATTTCGGAATTTCGGAACATTCCAATGTTTCAAAAAATTCGGAATTTCTGCATATTCCAATTTGCAAATTTAAGAATTTTGAAATATTCCGATTTTCAAAACTTTAGAAAAAGTATAATTTTCTACTCCTAACCTTAGTTCTTCTGG</canonical_amplicon>
		<polymorphic_amplicon>GGTTTAGGATGTTATTTGAAAACTATCTCGGAAGAAATTCCATCATAAATATCCGGAATGTTATTTCCGGAATTTTTCGAAATATCGAAAATCCAAGTTTCTAAATTTTGGAATTTCGTAATATTCYAGTTTTTATAACTTCGGAATTTTGGATGATTCCGATGTTCAAAATTTTGGAATTCCGGATTTCATAGTTCTGCAATTTTGAAGCATTTCGATTTGCATAATCCGGAATTTCGGAATATTCCAATTTTAAAAATTTCGGAGTTTTGGAATACTCCGATTTGCAAATTTTCGGAATTTCTGAATTTCGTAACTTCAGTATATTCCAAATTAAACATTTTCGGAATTTCGGAATTTCGGAACATTCCAATGTTTCAAAAAATTCGGAATTTCTGCATATTCCAATTTGCAAATTTAAGAATTTTGAAATATTCCGATTTTCAAAACTTTAGAAAAAGTATAATTTTCTACTCCTAACCTTAGTTCTTCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32795</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>256816</contig_pos>
        <strand></strand>
        <context>aaatttcgga[G/A]ttttggaata</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GATTTGCATAATCCGGAATTTCGGAATATTCCAATTTTAAAAATTTCGGA</left_flank>
        <right_flank>TTTTGGAATACTCCGATTTGCAAATTTTCGGAATTTCTGAATTTCGTAAC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATGCTCCAGAATCTCCCACATCCTCTTATTTCTATTTTTGCTATTCTGAAAACGTTTTTTTAAGTCTTCGGTTCCTTACCCACACCTCCAGAAAAGCCTATTTTTTGTCTAGTAAATAAGTAGAAAGGAATAGAAGAAAAGAGCAAAAATTATATTACAGCGGAATGGTGAAAAACACATGTTGAAAATATGAGAGATTTTATTGTTCTGGTTTTAAAATTTTCATAATGAGGTTTAGGATGTTATTTGAAAACTATCTCGGAAGAAATTCCATCATAAATATCCGGAATGTTATTTCCGGAATTTTTCGAAATATCGAAAATCCAAGTTTCTAAATTTTGGAATTTCGTAATATTCTAGTTTTTATAACTTCGGAATTTTGGATGATTCCGATGTTCAAAATTTTGGAATTCCGGATTTCATAGTTCTGCAATTTTGAAGCATTTCGATTTGCATAATCCGGAATTTCGGAATATTCCAATTTTAAAAATTTCGGAGTTTTGGAATACTCCGATTTGCAAATTTTCGGAATTTCTGAATTTCGTAACTTCAGTATATTCCAAATTAAACATTTTCGGAATTTCGGAATTTCGGAACATTCCAATGTTTCAAAAAATTCGGAATTTCTGCATATTCCAATTTGCAAATTTAAGAATTTTGAAATATTCCGATTTTCAAAACTTTAGAAAAAGTATAATTTTCTACTCCTAACCTTAGTTCTTCTGGTTTGAGTCTCTGAATTTGTCTCAAAACTAGATTATGTTACATTTTCGGATTGTCATTCACCCCCCCCCCCCCCCCCCATTCTATTTTCCAATTAATTTTCCATGGTCACTTCATTTTTTTGTGTTTCTATCATCAGAAACTTCCTCGAACCCAACGTCTTCTTCTTCACTTCAGAAGACGCGTAAAGCATGTGTGAATCAAAGAATAATTTATGGTAATTCCATTCTCACCCACCCCGTTTTCCTTGTCCGCTCTCTCGTTTTTTTCGAAAA</canonical>
            <polymorphic>CGATGCTCCAGAATCTCCCACATCCTCTTATTTCTATTTTTGCTATTCTGAAAACGTTTTTTTAAGTCTTCGGTTCCTTACCCACACCTCCAGAAAAGCCTATTTTTTGTCTAGTAAATAAGTAGAAAGGAATAGAAGAAAAGAGCAAAAATTATATTACAGCGGAATGGTGAAAAACACATGTTGAAAATATGAGAGATTTTATTGTTCTGGTTTTAAAATTTTCATAATGAGGTTTAGGATGTTATTTGAAAACTATCTCGGAAGAAATTCCATCATAAATATCCGGAATGTTATTTCCGGAATTTTTCGAAATATCGAAAATCCAAGTTTCTAAATTTTGGAATTTCGTAATATTCTAGTTTTTATAACTTCGGAATTTTGGATGATTCCGATGTTCAAAATTTTGGAATTCCGGATTTCATAGTTCTGCAATTTTGAAGCATTTCGATTTGCATAATCCGGAATTTCGGAATATTCCAATTTTAAAAATTTCGGARTTTTGGAATACTCCGATTTGCAAATTTTCGGAATTTCTGAATTTCGTAACTTCAGTATATTCCAAATTAAACATTTTCGGAATTTCGGAATTTCGGAACATTCCAATGTTTCAAAAAATTCGGAATTTCTGCATATTCCAATTTGCAAATTTAAGAATTTTGAAATATTCCGATTTTCAAAACTTTAGAAAAAGTATAATTTTCTACTCCTAACCTTAGTTCTTCTGGTTTGAGTCTCTGAATTTGTCTCAAAACTAGATTATGTTACATTTTCGGATTGTCATTCACCCCCCCCCCCCCCCCCCATTCTATTTTCCAATTAATTTTCCATGGTCACTTCATTTTTTTGTGTTTCTATCATCAGAAACTTCCTCGAACCCAACGTCTTCTTCTTCACTTCAGAAGACGCGTAAAGCATGTGTGAATCAAAGAATAATTTATGGTAATTCCATTCTCACCCACCCCGTTTTCCTTGTCCGCTCTCTCGTTTTTTTCGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTAGGATGTTATTTGAAAACT</pcr_primer_p1>
		<pcr_primer_p2>CCAGAAGAACTAAGGTTAGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>495</pcr_amplicon_size>
		<canonical_amplicon>GGTTTAGGATGTTATTTGAAAACTATCTCGGAAGAAATTCCATCATAAATATCCGGAATGTTATTTCCGGAATTTTTCGAAATATCGAAAATCCAAGTTTCTAAATTTTGGAATTTCGTAATATTCTAGTTTTTATAACTTCGGAATTTTGGATGATTCCGATGTTCAAAATTTTGGAATTCCGGATTTCATAGTTCTGCAATTTTGAAGCATTTCGATTTGCATAATCCGGAATTTCGGAATATTCCAATTTTAAAAATTTCGGAGTTTTGGAATACTCCGATTTGCAAATTTTCGGAATTTCTGAATTTCGTAACTTCAGTATATTCCAAATTAAACATTTTCGGAATTTCGGAATTTCGGAACATTCCAATGTTTCAAAAAATTCGGAATTTCTGCATATTCCAATTTGCAAATTTAAGAATTTTGAAATATTCCGATTTTCAAAACTTTAGAAAAAGTATAATTTTCTACTCCTAACCTTAGTTCTTCTGG</canonical_amplicon>
		<polymorphic_amplicon>GGTTTAGGATGTTATTTGAAAACTATCTCGGAAGAAATTCCATCATAAATATCCGGAATGTTATTTCCGGAATTTTTCGAAATATCGAAAATCCAAGTTTCTAAATTTTGGAATTTCGTAATATTCTAGTTTTTATAACTTCGGAATTTTGGATGATTCCGATGTTCAAAATTTTGGAATTCCGGATTTCATAGTTCTGCAATTTTGAAGCATTTCGATTTGCATAATCCGGAATTTCGGAATATTCCAATTTTAAAAATTTCGGARTTTTGGAATACTCCGATTTGCAAATTTTCGGAATTTCTGAATTTCGTAACTTCAGTATATTCCAAATTAAACATTTTCGGAATTTCGGAATTTCGGAACATTCCAATGTTTCAAAAAATTCGGAATTTCTGCATATTCCAATTTGCAAATTTAAGAATTTTGAAATATTCCGATTTTCAAAACTTTAGAAAAAGTATAATTTTCTACTCCTAACCTTAGTTCTTCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32796</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>267151</contig_pos>
        <strand>+</strand>
        <context>ATATGTTATG[A/T]CASYTCTATC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTATTTACATAATCCAGGTCAAAAATTCAGTGAAGATCACATATGTTATG</left_flank>
        <right_flank>CAGTTCTATCTCTTCCTTTTTCTGTGTCTTTTTTGGTTGAAAATAAATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTGTTTTTTCTCTGTTTTTATCTCTCTCGCTCTTTCTCATTCGCTTTTTTCCCACCCTAGTGTCAAAACATTCGGTTTTTCTTATGTTGAGTGCTCATCGTTACTCTAAATCGGAAAAAAAAGAGAGAAAAGAAGAAATAGGAAATAAGAGAAAGCAATTATTCTGACTGAATGTTCCAAAAGAAAAACTAAAAATACAGGCGAAAATTCGAACTGCAAACGAAAATTTCACAGAGACCTGACAGGTGATTTCCGTCTCACTTGTCTCAAAGATATCTGAAAACAAACAGCAATTGTCTTTTCACTTTTTCACTTATCTCAATTTTTAAGTGTTTTTCTAATATTTCAAATTCCAGGTCGAGAATATCTTCAATCGGTGTAAAACAGTCGAATGTGTTTATAAGTAAGTTCCTTCTTTTTTTCGTGTTTTGATGATGTTGTTTCCTCTATTTACATAATCCAGGTCAAAAATTCAGTGAAGATCACATATGTTATGTCAGTTCTATCTCTTCCTTTTTCTGTGTCTTTTTTGGTTGAAAATAAATAAAAGAGTCGAGTTACTCAAAAGAGACATAACATACTGACATTTTTGGTATGTCTAGGTAGACAACGTCAGAGTTGATTTTTTGGATTTTAGATTTTTCAGTTGAAGCTAAATTGGTGGGAACCAAGGATTGCATGACATATGTTTCAAAATCTTGTGATAACAATTTTATATAGAAATAATTATCTCGCAGACATCATGATTGGTGATGGAAAATAGATGATTTCATGGCTAACAAATCATACGGATCACTTTTTTAAAAAAAGGTTCACAAGAAAGCTGTCACTCTGGTCTAATTTCAATCTGCCCTGCTTTCGGAAATTTTAAAGTGGGCGGGGCATAGGCCCAGTAGCAAAATCCGTAAAGGAATACTTGTAAAATTCCGGGCCGGGCCTGAGGAAATTTTCAAGGCCCGGGCCCGGCCCGGAAGGCCCGGTAGCAAAAATTTTGTCA</canonical>
            <polymorphic>ATTCTGTTTTTTCTCTGTTTTTATCTCTCTCGCTCTTTCTCATTCGCTTTTTTCCCACCCTAGTGTCAAAACATTCGGTTTTTCTTATGTTGAGTGCTCATCGTTACTCTAAATCGGAAAAAAAAGAGAGAAAAGAAGAAATAGGAAATAAGAGAAAGCAATTATTCTGACTGAATGTTCCAAAAGAAAAACTAAAAATACAGGCGAAAATTCGAACTGCAAACGAAAATTTCACAGAGACCTGACAGGTGATTTCCGTCTCACTTGTCTCAAAGATATCTGAAAACAAACAGCAATTGTCTTTTCACTTTTTCACTTATCTCAATTTTTAAGTGTTTTTCTAATATTTCAAATTCCAGGTCGAGAATATCTTCAATCGGTGTAAAACAGTCGAATGTGTTTATAAGTAAGTTCCTTCTTTTTTTCGTGTTTTGATGATGTTGTTTCCTCTATTTACATAATCCAGGTCAAAAATTCAGTGAAGATCACATATGTTATGWCAGTTCTATCTCTTCCTTTTTCTGTGTCTTTTTTGGTTGAAAATAAATAAAAGAGTCGAGTTACTCAAAAGAGACATAACATACTGACATTTTTGGTATGTCTAGGTAGACAACGTCAGAGTTGATTTTTTGGATTTTAGATTTTTCAGTTGAAGCTAAATTGGTGGGAACCAAGGATTGCATGACATATGTTTCAAAATCTTGTGATAACAATTTTATATAGAAATAATTATCTCGCAGACATCATGATTGGTGATGGAAAATAGATGATTTCATGGCTAACAAATCATACGGATCACTTTTTTAAAAAAAGGTTCACAAGAAAGCTGTCACTCTGGTCTAATTTCAATCTGCCCTGCTTTCGGAAATTTTAAAGTGGGCGGGGCATAGGCCCAGTAGCAAAATCCGTAAAGGAATACTTGTAAAATTCCGGGCCGGGCCTGAGGAAATTTTCAAGGCCCGGGCCCGGCCCGGAAGGCCCGGTAGCAAAAATTTTGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAATATCTTCAATCGGTGTAA</pcr_primer_p1>
		<pcr_primer_p2>ACCTAGACATACCAAAAATGTCA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAGAATATCTTCAATCGGTGTAAAACAGTCGAATGTGTTTATAAGTAAGTTCCTTCTTTTTTTCGTGTTTTGATGATGTTGTTTCCTCTATTTACATAATCCAGGTCAAAAATTCAGTGAAGATCACATATGTTATGTCAGTTCTATCTCTTCCTTTTTCTGTGTCTTTTTTGGTTGAAAATAAATAAAAGAGTCGAGTTACTCAAAAGAGACATAACATACTGACATTTTTGGTATGTCTAGGT</canonical_amplicon>
		<polymorphic_amplicon>GAGAATATCTTCAATCGGTGTAAAACAGTCGAATGTGTTTATAAGTAAGTTCCTTCTTTTTTTCGTGTTTTGATGATGTTGTTTCCTCTATTTACATAATCCAGGTCAAAAATTCAGTGAAGATCACATATGTTATGWCAGTTCTATCTCTTCCTTTTTCTGTGTCTTTTTTGGTTGAAAATAAATAAAAGAGTCGAGTTACTCAAAAGAGACATAACATACTGACATTTTTGGTATGTCTAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32797</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>267154</contig_pos>
        <strand>+</strand>
        <context>TGTTATGWCA[C/G]YTCTATCTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTACATAATCCAGGTCAAAAATTCAGTGAAGATCACATATGTTATGTCA</left_flank>
        <right_flank>TTCTATCTCTTCCTTTTTCTGTGTCTTTTTTGGTTGAAAATAAATAAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTTTTTTCTCTGTTTTTATCTCTCTCGCTCTTTCTCATTCGCTTTTTTCCCACCCTAGTGTCAAAACATTCGGTTTTTCTTATGTTGAGTGCTCATCGTTACTCTAAATCGGAAAAAAAAGAGAGAAAAGAAGAAATAGGAAATAAGAGAAAGCAATTATTCTGACTGAATGTTCCAAAAGAAAAACTAAAAATACAGGCGAAAATTCGAACTGCAAACGAAAATTTCACAGAGACCTGACAGGTGATTTCCGTCTCACTTGTCTCAAAGATATCTGAAAACAAACAGCAATTGTCTTTTCACTTTTTCACTTATCTCAATTTTTAAGTGTTTTTCTAATATTTCAAATTCCAGGTCGAGAATATCTTCAATCGGTGTAAAACAGTCGAATGTGTTTATAAGTAAGTTCCTTCTTTTTTTCGTGTTTTGATGATGTTGTTTCCTCTATTTACATAATCCAGGTCAAAAATTCAGTGAAGATCACATATGTTATGTCAGTTCTATCTCTTCCTTTTTCTGTGTCTTTTTTGGTTGAAAATAAATAAAAGAGTCGAGTTACTCAAAAGAGACATAACATACTGACATTTTTGGTATGTCTAGGTAGACAACGTCAGAGTTGATTTTTTGGATTTTAGATTTTTCAGTTGAAGCTAAATTGGTGGGAACCAAGGATTGCATGACATATGTTTCAAAATCTTGTGATAACAATTTTATATAGAAATAATTATCTCGCAGACATCATGATTGGTGATGGAAAATAGATGATTTCATGGCTAACAAATCATACGGATCACTTTTTTAAAAAAAGGTTCACAAGAAAGCTGTCACTCTGGTCTAATTTCAATCTGCCCTGCTTTCGGAAATTTTAAAGTGGGCGGGGCATAGGCCCAGTAGCAAAATCCGTAAAGGAATACTTGTAAAATTCCGGGCCGGGCCTGAGGAAATTTTCAAGGCCCGGGCCCGGCCCGGAAGGCCCGGTAGCAAAAATTTTGTCATTT</canonical>
            <polymorphic>CTGTTTTTTCTCTGTTTTTATCTCTCTCGCTCTTTCTCATTCGCTTTTTTCCCACCCTAGTGTCAAAACATTCGGTTTTTCTTATGTTGAGTGCTCATCGTTACTCTAAATCGGAAAAAAAAGAGAGAAAAGAAGAAATAGGAAATAAGAGAAAGCAATTATTCTGACTGAATGTTCCAAAAGAAAAACTAAAAATACAGGCGAAAATTCGAACTGCAAACGAAAATTTCACAGAGACCTGACAGGTGATTTCCGTCTCACTTGTCTCAAAGATATCTGAAAACAAACAGCAATTGTCTTTTCACTTTTTCACTTATCTCAATTTTTAAGTGTTTTTCTAATATTTCAAATTCCAGGTCGAGAATATCTTCAATCGGTGTAAAACAGTCGAATGTGTTTATAAGTAAGTTCCTTCTTTTTTTCGTGTTTTGATGATGTTGTTTCCTCTATTTACATAATCCAGGTCAAAAATTCAGTGAAGATCACATATGTTATGTCASTTCTATCTCTTCCTTTTTCTGTGTCTTTTTTGGTTGAAAATAAATAAAAGAGTCGAGTTACTCAAAAGAGACATAACATACTGACATTTTTGGTATGTCTAGGTAGACAACGTCAGAGTTGATTTTTTGGATTTTAGATTTTTCAGTTGAAGCTAAATTGGTGGGAACCAAGGATTGCATGACATATGTTTCAAAATCTTGTGATAACAATTTTATATAGAAATAATTATCTCGCAGACATCATGATTGGTGATGGAAAATAGATGATTTCATGGCTAACAAATCATACGGATCACTTTTTTAAAAAAAGGTTCACAAGAAAGCTGTCACTCTGGTCTAATTTCAATCTGCCCTGCTTTCGGAAATTTTAAAGTGGGCGGGGCATAGGCCCAGTAGCAAAATCCGTAAAGGAATACTTGTAAAATTCCGGGCCGGGCCTGAGGAAATTTTCAAGGCCCGGGCCCGGCCCGGAAGGCCCGGTAGCAAAAATTTTGTCATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAATATCTTCAATCGGTGTAA</pcr_primer_p1>
		<pcr_primer_p2>ACCTAGACATACCAAAAATGTCA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAGAATATCTTCAATCGGTGTAAAACAGTCGAATGTGTTTATAAGTAAGTTCCTTCTTTTTTTCGTGTTTTGATGATGTTGTTTCCTCTATTTACATAATCCAGGTCAAAAATTCAGTGAAGATCACATATGTTATGTCAGTTCTATCTCTTCCTTTTTCTGTGTCTTTTTTGGTTGAAAATAAATAAAAGAGTCGAGTTACTCAAAAGAGACATAACATACTGACATTTTTGGTATGTCTAGGT</canonical_amplicon>
		<polymorphic_amplicon>GAGAATATCTTCAATCGGTGTAAAACAGTCGAATGTGTTTATAAGTAAGTTCCTTCTTTTTTTCGTGTTTTGATGATGTTGTTTCCTCTATTTACATAATCCAGGTCAAAAATTCAGTGAAGATCACATATGTTATGTCASTTCTATCTCTTCCTTTTTCTGTGTCTTTTTTGGTTGAAAATAAATAAAAGAGTCGAGTTACTCAAAAGAGACATAACATACTGACATTTTTGGTATGTCTAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32798</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>267155</contig_pos>
        <strand>+</strand>
        <context>GTTATGWCAS[C/T]TCTATCTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTACATAATCCAGGTCAAAAATTCAGTGAAGATCACATATGTTATGTCAG</left_flank>
        <right_flank>TCTATCTCTTCCTTTTTCTGTGTCTTTTTTGGTTGAAAATAAATAAAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTTTTCTCTGTTTTTATCTCTCTCGCTCTTTCTCATTCGCTTTTTTCCCACCCTAGTGTCAAAACATTCGGTTTTTCTTATGTTGAGTGCTCATCGTTACTCTAAATCGGAAAAAAAAGAGAGAAAAGAAGAAATAGGAAATAAGAGAAAGCAATTATTCTGACTGAATGTTCCAAAAGAAAAACTAAAAATACAGGCGAAAATTCGAACTGCAAACGAAAATTTCACAGAGACCTGACAGGTGATTTCCGTCTCACTTGTCTCAAAGATATCTGAAAACAAACAGCAATTGTCTTTTCACTTTTTCACTTATCTCAATTTTTAAGTGTTTTTCTAATATTTCAAATTCCAGGTCGAGAATATCTTCAATCGGTGTAAAACAGTCGAATGTGTTTATAAGTAAGTTCCTTCTTTTTTTCGTGTTTTGATGATGTTGTTTCCTCTATTTACATAATCCAGGTCAAAAATTCAGTGAAGATCACATATGTTATGTCAGTTCTATCTCTTCCTTTTTCTGTGTCTTTTTTGGTTGAAAATAAATAAAAGAGTCGAGTTACTCAAAAGAGACATAACATACTGACATTTTTGGTATGTCTAGGTAGACAACGTCAGAGTTGATTTTTTGGATTTTAGATTTTTCAGTTGAAGCTAAATTGGTGGGAACCAAGGATTGCATGACATATGTTTCAAAATCTTGTGATAACAATTTTATATAGAAATAATTATCTCGCAGACATCATGATTGGTGATGGAAAATAGATGATTTCATGGCTAACAAATCATACGGATCACTTTTTTAAAAAAAGGTTCACAAGAAAGCTGTCACTCTGGTCTAATTTCAATCTGCCCTGCTTTCGGAAATTTTAAAGTGGGCGGGGCATAGGCCCAGTAGCAAAATCCGTAAAGGAATACTTGTAAAATTCCGGGCCGGGCCTGAGGAAATTTTCAAGGCCCGGGCCCGGCCCGGAAGGCCCGGTAGCAAAAATTTTGTCATTTT</canonical>
            <polymorphic>TGTTTTTTCTCTGTTTTTATCTCTCTCGCTCTTTCTCATTCGCTTTTTTCCCACCCTAGTGTCAAAACATTCGGTTTTTCTTATGTTGAGTGCTCATCGTTACTCTAAATCGGAAAAAAAAGAGAGAAAAGAAGAAATAGGAAATAAGAGAAAGCAATTATTCTGACTGAATGTTCCAAAAGAAAAACTAAAAATACAGGCGAAAATTCGAACTGCAAACGAAAATTTCACAGAGACCTGACAGGTGATTTCCGTCTCACTTGTCTCAAAGATATCTGAAAACAAACAGCAATTGTCTTTTCACTTTTTCACTTATCTCAATTTTTAAGTGTTTTTCTAATATTTCAAATTCCAGGTCGAGAATATCTTCAATCGGTGTAAAACAGTCGAATGTGTTTATAAGTAAGTTCCTTCTTTTTTTCGTGTTTTGATGATGTTGTTTCCTCTATTTACATAATCCAGGTCAAAAATTCAGTGAAGATCACATATGTTATGTCAGYTCTATCTCTTCCTTTTTCTGTGTCTTTTTTGGTTGAAAATAAATAAAAGAGTCGAGTTACTCAAAAGAGACATAACATACTGACATTTTTGGTATGTCTAGGTAGACAACGTCAGAGTTGATTTTTTGGATTTTAGATTTTTCAGTTGAAGCTAAATTGGTGGGAACCAAGGATTGCATGACATATGTTTCAAAATCTTGTGATAACAATTTTATATAGAAATAATTATCTCGCAGACATCATGATTGGTGATGGAAAATAGATGATTTCATGGCTAACAAATCATACGGATCACTTTTTTAAAAAAAGGTTCACAAGAAAGCTGTCACTCTGGTCTAATTTCAATCTGCCCTGCTTTCGGAAATTTTAAAGTGGGCGGGGCATAGGCCCAGTAGCAAAATCCGTAAAGGAATACTTGTAAAATTCCGGGCCGGGCCTGAGGAAATTTTCAAGGCCCGGGCCCGGCCCGGAAGGCCCGGTAGCAAAAATTTTGTCATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAATATCTTCAATCGGTGTAA</pcr_primer_p1>
		<pcr_primer_p2>ACCTAGACATACCAAAAATGTCA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAGAATATCTTCAATCGGTGTAAAACAGTCGAATGTGTTTATAAGTAAGTTCCTTCTTTTTTTCGTGTTTTGATGATGTTGTTTCCTCTATTTACATAATCCAGGTCAAAAATTCAGTGAAGATCACATATGTTATGTCAGTTCTATCTCTTCCTTTTTCTGTGTCTTTTTTGGTTGAAAATAAATAAAAGAGTCGAGTTACTCAAAAGAGACATAACATACTGACATTTTTGGTATGTCTAGGT</canonical_amplicon>
		<polymorphic_amplicon>GAGAATATCTTCAATCGGTGTAAAACAGTCGAATGTGTTTATAAGTAAGTTCCTTCTTTTTTTCGTGTTTTGATGATGTTGTTTCCTCTATTTACATAATCCAGGTCAAAAATTCAGTGAAGATCACATATGTTATGTCAGYTCTATCTCTTCCTTTTTCTGTGTCTTTTTTGGTTGAAAATAAATAAAAGAGTCGAGTTACTCAAAAGAGACATAACATACTGACATTTTTGGTATGTCTAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32799</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>269052</contig_pos>
        <strand>+</strand>
        <context>AAAATTAAAG[A/C]TTTTTTTTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTCTTATCCCTTCGGTTTCTTTGGGAAACAGAATACCGAAAAATTAAAG</left_flank>
        <right_flank>TTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTTCAAATTTATTAACATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCGTCCAAATGAGTCAGTTTTTTTTCAATGTTTTTTTTTCTGTGTTACATTTTTCATCTCCCTTTTTTCTCTCTCTCTCTCAAGTTTTTCGCACTTGTTACTCATATTCAGAGTAAGGGGAATCAGAAAATTAAGAGAGTTTGGAGAAAACGTCCTTTCTAGAAGTTTCCGGTACCCTCTAACCGATTCAAATTTCCGTTTTTTTTTCTTCTTTAAAATTCAAAACGACTTCTCACAACTCTCAAATTACTCTCCGGTTACTGTAGCAGTTTTTTGGAACGAGAGAAAAGAGTTCATGTTGCAATTCGCCGGAAAAAAATGCCAAAACAAAGCACTAGGAAGTGTTGTAAAACTAACCGAATATGACCCCTGGGACGAATGAAAGATGTTTTTCTATTTTTCGTTGTTCTTTTCTCGTTATGTTTCGACTGAAAATTGAACGTCAATTCTTCTTATCCCTTCGGTTTCTTTGGGAAACAGAATACCGAAAAATTAAAGTTTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTTCAAATTTATTAACATAAATTTTGATTGTTTAATTGGACTTTTGTCTTCTAGCGGTTTCTGAAATTCCAGAGAAGTACAAGGAAAAAGTCCAAAATATAGGTCTTCCTTGAAATTTTTAAAGACTTGCCCTCTATGATTTTTAGAATTTTTAGACCTGCACTTCTTTTTAAAAACCTTCTTCTCAATTTTCTCCTCTCACCAAAGTTCCGAATGAATCCATACTTTGATCTCAATTTCTTCCTGATTTTAAAAGTCTTTTATCGCTTCTCTTCGCAAAAAAAAATACGGAGGAAGACTACCGATAAGGTTCGTCTGGTTGAAAAAATCTGCATATTGAGTGGTCAAAAGCATTTGACGAAACGTTTGAAAAATGGCTTCTTCTACGTTTTTTCCACACTTTTCGCATGCACATGAATACGATAGTTTCTTGAAATCATGCATCAAATCAGACTTCATCTTCTGACAT</canonical>
            <polymorphic>GTCGTCCAAATGAGTCAGTTTTTTTTCAATGTTTTTTTTTCTGTGTTACATTTTTCATCTCCCTTTTTTCTCTCTCTCTCTCAAGTTTTTCGCACTTGTTACTCATATTCAGAGTAAGGGGAATCAGAAAATTAAGAGAGTTTGGAGAAAACGTCCTTTCTAGAAGTTTCCGGTACCCTCTAACCGATTCAAATTTCCGTTTTTTTTTCTTCTTTAAAATTCAAAACGACTTCTCACAACTCTCAAATTACTCTCCGGTTACTGTAGCAGTTTTTTGGAACGAGAGAAAAGAGTTCATGTTGCAATTCGCCGGAAAAAAATGCCAAAACAAAGCACTAGGAAGTGTTGTAAAACTAACCGAATATGACCCCTGGGACGAATGAAAGATGTTTTTCTATTTTTCGTTGTTCTTTTCTCGTTATGTTTCGACTGAAAATTGAACGTCAATTCTTCTTATCCCTTCGGTTTCTTTGGGAAACAGAATACCGAAAAATTAAAGMTTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTTCAAATTTATTAACATAAATTTTGATTGTTTAATTGGACTTTTGTCTTCTAGCGGTTTCTGAAATTCCAGAGAAGTACAAGGAAAAAGTCCAAAATATAGGTCTTCCTTGAAATTTTTAAAGACTTGCCCTCTATGATTTTTAGAATTTTTAGACCTGCACTTCTTTTTAAAAACCTTCTTCTCAATTTTCTCCTCTCACCAAAGTTCCGAATGAATCCATACTTTGATCTCAATTTCTTCCTGATTTTAAAAGTCTTTTATCGCTTCTCTTCGCAAAAAAAAATACGGAGGAAGACTACCGATAAGGTTCGTCTGGTTGAAAAAATCTGCATATTGAGTGGTCAAAAGCATTTGACGAAACGTTTGAAAAATGGCTTCTTCTACGTTTTTTCCACACTTTTCGCATGCACATGAATACGATAGTTTCTTGAAATCATGCATCAAATCAGACTTCATCTTCTGACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAAAACTAACCGAATATGACC</pcr_primer_p1>
		<pcr_primer_p2>GCTAGAAGACAAAAGTCCAATTA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TGTAAAACTAACCGAATATGACCCCTGGGACGAATGAAAGATGTTTTTCTATTTTTCGTTGTTCTTTTCTCGTTATGTTTCGACTGAAAATTGAACGTCAATTCTTCTTATCCCTTCGGTTTCTTTGGGAAACAGAATACCGAAAAATTAAAGTTTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTTCAAATTTATTAACATAAATTTTGATTGTTTAATTGGACTTTTGTCTTCTAGC</canonical_amplicon>
		<polymorphic_amplicon>TGTAAAACTAACCGAATATGACCCCTGGGACGAATGAAAGATGTTTTTCTATTTTTCGTTGTTCTTTTCTCGTTATGTTTCGACTGAAAATTGAACGTCAATTCTTCTTATCCCTTCGGTTTCTTTGGGAAACAGAATACCGAAAAATTAAAGMTTTTTTTTGCATGTTTTCCCTTTCTCTAATTTTTCAAATTTATTAACATAAATTTTGATTGTTTAATTGGACTTTTGTCTTCTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32800</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>297873</contig_pos>
        <strand>+</strand>
        <context>TGTCTGCAAT[A/G]TCTTCTACCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGTTCTCTTCTTCTTCCTCCAAAACTCTTCGTAAAACGATGTCTGCAAT</left_flank>
        <right_flank>TCTTCTACCATTTTCCTTTTGTCACCATCGATGTCAATCACAACTGCGAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCAAATGCCAGAAGAAAATCATTCATTCTAAACAACATCATGACATCTTGGTGTTAAAAAAACTGTATGACGATGGTGAGAGATGAAAAGAGAAGCCGCAACGAATCACTTCCTCTGTTTTTCTAGAATAATTTGAAATATTTTCAACAATTCAACAGGTTCCACGGCAGGCTGTACTGGTGGAGTGAATAATGAAAACAGTGGGGACTGAGCGCCGAAAAGGGGAAGCTGAGCAGGGTTGTTAGCTATGAGTGATTGACAAAGAGCCAATTGCAAAGGATTCCAATGAGGTTGGGTAGTTGTAAGTTGAGAGGAAAACGATGAACTCAGAAGTTGGTTTACTGAAAGTGGAGAAGAATCGGTTGAGGTTGAATTAGATGTACGAGATCCATAGGTGTTGATGACTGAAAGGGGAAACTCAATTCGCATTTGAAATTCTCAACCCACTTCGTTCTCTTCTTCTTCCTCCAAAACTCTTCGTAAAACGATGTCTGCAATATCTTCTACCATTTTCCTTTTGTCACCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAATAAAATACTTGAAATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACATAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTTCAATTCGAAAATCGTCCCTGAACCGTTCCGTACCCCTACTGACAATCAAGGTCGGAGAAAAATTTGTTGACTGGTTCGTAAACATACTGTCACGCACCTCGAACTGAGCTTGTTTACGAAAAAAGTTAACTATATGTGTCGAAACTAGAGATGGAGTCCTTGGATACTGAAAACCTGTTGATGACGTTATAGAAACTCCACAAACAACCTTCTTCGAAACCGTTTTCTGCAAGAAAACAAGCGACGAAACGAATATACCGAGAATTCAGGGGTACTGTAACTGTGGAAATGAGCTAGCTGATACGGACCGAAACTCAT</canonical>
            <polymorphic>GTCAAATGCCAGAAGAAAATCATTCATTCTAAACAACATCATGACATCTTGGTGTTAAAAAAACTGTATGACGATGGTGAGAGATGAAAAGAGAAGCCGCAACGAATCACTTCCTCTGTTTTTCTAGAATAATTTGAAATATTTTCAACAATTCAACAGGTTCCACGGCAGGCTGTACTGGTGGAGTGAATAATGAAAACAGTGGGGACTGAGCGCCGAAAAGGGGAAGCTGAGCAGGGTTGTTAGCTATGAGTGATTGACAAAGAGCCAATTGCAAAGGATTCCAATGAGGTTGGGTAGTTGTAAGTTGAGAGGAAAACGATGAACTCAGAAGTTGGTTTACTGAAAGTGGAGAAGAATCGGTTGAGGTTGAATTAGATGTACGAGATCCATAGGTGTTGATGACTGAAAGGGGAAACTCAATTCGCATTTGAAATTCTCAACCCACTTCGTTCTCTTCTTCTTCCTCCAAAACTCTTCGTAAAACGATGTCTGCAATRTCTTCTACCATTTTCCTTTTGTCACCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAATAAAATACTTGAAATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACATAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTTCAATTCGAAAATCGTCCCTGAACCGTTCCGTACCCCTACTGACAATCAAGGTCGGAGAAAAATTTGTTGACTGGTTCGTAAACATACTGTCACGCACCTCGAACTGAGCTTGTTTACGAAAAAAGTTAACTATATGTGTCGAAACTAGAGATGGAGTCCTTGGATACTGAAAACCTGTTGATGACGTTATAGAAACTCCACAAACAACCTTCTTCGAAACCGTTTTCTGCAAGAAAACAAGCGACGAAACGAATATACCGAGAATTCAGGGGTACTGTAACTGTGGAAATGAGCTAGCTGATACGGACCGAAACTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGAAATTCTCAACCCACT</pcr_primer_p1>
		<pcr_primer_p2>TGAAATGAGAGGAGTGACTAGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTGAAATTCTCAACCCACTTCGTTCTCTTCTTCTTCCTCCAAAACTCTTCGTAAAACGATGTCTGCAATATCTTCTACCATTTTCCTTTTGTCACCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAATAAAATACTTGAAATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACATAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCA</canonical_amplicon>
		<polymorphic_amplicon>ATTTGAAATTCTCAACCCACTTCGTTCTCTTCTTCTTCCTCCAAAACTCTTCGTAAAACGATGTCTGCAATRTCTTCTACCATTTTCCTTTTGTCACCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAATAAAATACTTGAAATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACATAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32801</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>297948</contig_pos>
        <strand>+</strand>
        <context>GATAAAATAA[G/T]AAAATACTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAA</left_flank>
        <right_flank>AAAATACTTGAAATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGAGAGATGAAAAGAGAAGCCGCAACGAATCACTTCCTCTGTTTTTCTAGAATAATTTGAAATATTTTCAACAATTCAACAGGTTCCACGGCAGGCTGTACTGGTGGAGTGAATAATGAAAACAGTGGGGACTGAGCGCCGAAAAGGGGAAGCTGAGCAGGGTTGTTAGCTATGAGTGATTGACAAAGAGCCAATTGCAAAGGATTCCAATGAGGTTGGGTAGTTGTAAGTTGAGAGGAAAACGATGAACTCAGAAGTTGGTTTACTGAAAGTGGAGAAGAATCGGTTGAGGTTGAATTAGATGTACGAGATCCATAGGTGTTGATGACTGAAAGGGGAAACTCAATTCGCATTTGAAATTCTCAACCCACTTCGTTCTCTTCTTCTTCCTCCAAAACTCTTCGTAAAACGATGTCTGCAATATCTTCTACCATTTTCCTTTTGTCACCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAATAAAATACTTGAAATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACATAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTTCAATTCGAAAATCGTCCCTGAACCGTTCCGTACCCCTACTGACAATCAAGGTCGGAGAAAAATTTGTTGACTGGTTCGTAAACATACTGTCACGCACCTCGAACTGAGCTTGTTTACGAAAAAAGTTAACTATATGTGTCGAAACTAGAGATGGAGTCCTTGGATACTGAAAACCTGTTGATGACGTTATAGAAACTCCACAAACAACCTTCTTCGAAACCGTTTTCTGCAAGAAAACAAGCGACGAAACGAATATACCGAGAATTCAGGGGTACTGTAACTGTGGAAATGAGCTAGCTGATACGGACCGAAACTCATTACGGTTTTCAGTTGCTTTTTCTCTTCGCTATTCTATTATTCTCGGACAAAAAAATCGGCAAAAGTGGCTGTGGC</canonical>
            <polymorphic>GGTGAGAGATGAAAAGAGAAGCCGCAACGAATCACTTCCTCTGTTTTTCTAGAATAATTTGAAATATTTTCAACAATTCAACAGGTTCCACGGCAGGCTGTACTGGTGGAGTGAATAATGAAAACAGTGGGGACTGAGCGCCGAAAAGGGGAAGCTGAGCAGGGTTGTTAGCTATGAGTGATTGACAAAGAGCCAATTGCAAAGGATTCCAATGAGGTTGGGTAGTTGTAAGTTGAGAGGAAAACGATGAACTCAGAAGTTGGTTTACTGAAAGTGGAGAAGAATCGGTTGAGGTTGAATTAGATGTACGAGATCCATAGGTGTTGATGACTGAAAGGGGAAACTCAATTCGCATTTGAAATTCTCAACCCACTTCGTTCTCTTCTTCTTCCTCCAAAACTCTTCGTAAAACGATGTCTGCAATATCTTCTACCATTTTCCTTTTGTCACCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAAKAAAATACTTGAAATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACATAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTTCAATTCGAAAATCGTCCCTGAACCGTTCCGTACCCCTACTGACAATCAAGGTCGGAGAAAAATTTGTTGACTGGTTCGTAAACATACTGTCACGCACCTCGAACTGAGCTTGTTTACGAAAAAAGTTAACTATATGTGTCGAAACTAGAGATGGAGTCCTTGGATACTGAAAACCTGTTGATGACGTTATAGAAACTCCACAAACAACCTTCTTCGAAACCGTTTTCTGCAAGAAAACAAGCGACGAAACGAATATACCGAGAATTCAGGGGTACTGTAACTGTGGAAATGAGCTAGCTGATACGGACCGAAACTCATTACGGTTTTCAGTTGCTTTTTCTCTTCGCTATTCTATTATTCTCGGACAAAAAAATCGGCAAAAGTGGCTGTGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGAAATTCTCAACCCACT</pcr_primer_p1>
		<pcr_primer_p2>TGAAATGAGAGGAGTGACTAGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTGAAATTCTCAACCCACTTCGTTCTCTTCTTCTTCCTCCAAAACTCTTCGTAAAACGATGTCTGCAATATCTTCTACCATTTTCCTTTTGTCACCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAATAAAATACTTGAAATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACATAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCA</canonical_amplicon>
		<polymorphic_amplicon>ATTTGAAATTCTCAACCCACTTCGTTCTCTTCTTCTTCCTCCAAAACTCTTCGTAAAACGATGTCTGCAATATCTTCTACCATTTTCCTTTTGTCACCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAAKAAAATACTTGAAATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACATAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32802</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>297959</contig_pos>
        <strand>+</strand>
        <context>AAAATACTTG[A/G]AATAATTCWT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAATAAAATACTTG</left_flank>
        <right_flank>AATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAGAGAAGCCGCAACGAATCACTTCCTCTGTTTTTCTAGAATAATTTGAAATATTTTCAACAATTCAACAGGTTCCACGGCAGGCTGTACTGGTGGAGTGAATAATGAAAACAGTGGGGACTGAGCGCCGAAAAGGGGAAGCTGAGCAGGGTTGTTAGCTATGAGTGATTGACAAAGAGCCAATTGCAAAGGATTCCAATGAGGTTGGGTAGTTGTAAGTTGAGAGGAAAACGATGAACTCAGAAGTTGGTTTACTGAAAGTGGAGAAGAATCGGTTGAGGTTGAATTAGATGTACGAGATCCATAGGTGTTGATGACTGAAAGGGGAAACTCAATTCGCATTTGAAATTCTCAACCCACTTCGTTCTCTTCTTCTTCCTCCAAAACTCTTCGTAAAACGATGTCTGCAATATCTTCTACCATTTTCCTTTTGTCACCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAATAAAATACTTGAAATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACATAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTTCAATTCGAAAATCGTCCCTGAACCGTTCCGTACCCCTACTGACAATCAAGGTCGGAGAAAAATTTGTTGACTGGTTCGTAAACATACTGTCACGCACCTCGAACTGAGCTTGTTTACGAAAAAAGTTAACTATATGTGTCGAAACTAGAGATGGAGTCCTTGGATACTGAAAACCTGTTGATGACGTTATAGAAACTCCACAAACAACCTTCTTCGAAACCGTTTTCTGCAAGAAAACAAGCGACGAAACGAATATACCGAGAATTCAGGGGTACTGTAACTGTGGAAATGAGCTAGCTGATACGGACCGAAACTCATTACGGTTTTCAGTTGCTTTTTCTCTTCGCTATTCTATTATTCTCGGACAAAAAAATCGGCAAAAGTGGCTGTGGCAGAAGGTTCCA</canonical>
            <polymorphic>AAAAGAGAAGCCGCAACGAATCACTTCCTCTGTTTTTCTAGAATAATTTGAAATATTTTCAACAATTCAACAGGTTCCACGGCAGGCTGTACTGGTGGAGTGAATAATGAAAACAGTGGGGACTGAGCGCCGAAAAGGGGAAGCTGAGCAGGGTTGTTAGCTATGAGTGATTGACAAAGAGCCAATTGCAAAGGATTCCAATGAGGTTGGGTAGTTGTAAGTTGAGAGGAAAACGATGAACTCAGAAGTTGGTTTACTGAAAGTGGAGAAGAATCGGTTGAGGTTGAATTAGATGTACGAGATCCATAGGTGTTGATGACTGAAAGGGGAAACTCAATTCGCATTTGAAATTCTCAACCCACTTCGTTCTCTTCTTCTTCCTCCAAAACTCTTCGTAAAACGATGTCTGCAATATCTTCTACCATTTTCCTTTTGTCACCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAATAAAATACTTGRAATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACATAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTTCAATTCGAAAATCGTCCCTGAACCGTTCCGTACCCCTACTGACAATCAAGGTCGGAGAAAAATTTGTTGACTGGTTCGTAAACATACTGTCACGCACCTCGAACTGAGCTTGTTTACGAAAAAAGTTAACTATATGTGTCGAAACTAGAGATGGAGTCCTTGGATACTGAAAACCTGTTGATGACGTTATAGAAACTCCACAAACAACCTTCTTCGAAACCGTTTTCTGCAAGAAAACAAGCGACGAAACGAATATACCGAGAATTCAGGGGTACTGTAACTGTGGAAATGAGCTAGCTGATACGGACCGAAACTCATTACGGTTTTCAGTTGCTTTTTCTCTTCGCTATTCTATTATTCTCGGACAAAAAAATCGGCAAAAGTGGCTGTGGCAGAAGGTTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>497 481 22</canonical_bands>
                <polymorphic_bands>978 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTGAAATTCTCAACCCACT</pcr_primer_p1>
		<pcr_primer_p2>TGAAATGAGAGGAGTGACTAGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTGAAATTCTCAACCCACTTCGTTCTCTTCTTCTTCCTCCAAAACTCTTCGTAAAACGATGTCTGCAATATCTTCTACCATTTTCCTTTTGTCACCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAATAAAATACTTGAAATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACATAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCA</canonical_amplicon>
		<polymorphic_amplicon>ATTTGAAATTCTCAACCCACTTCGTTCTCTTCTTCTTCCTCCAAAACTCTTCGTAAAACGATGTCTGCAATATCTTCTACCATTTTCCTTTTGTCACCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAATAAAATACTTGRAATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACATAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32803</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>297968</contig_pos>
        <strand>+</strand>
        <context>GRAATAATTC[A/T]TACCGTTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGCGACCAGCTCTGCAAATCGATAAAATAATAAAATACTTGAAATAATTC</left_flank>
        <right_flank>TACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACATAGAGAATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCGCAACGAATCACTTCCTCTGTTTTTCTAGAATAATTTGAAATATTTTCAACAATTCAACAGGTTCCACGGCAGGCTGTACTGGTGGAGTGAATAATGAAAACAGTGGGGACTGAGCGCCGAAAAGGGGAAGCTGAGCAGGGTTGTTAGCTATGAGTGATTGACAAAGAGCCAATTGCAAAGGATTCCAATGAGGTTGGGTAGTTGTAAGTTGAGAGGAAAACGATGAACTCAGAAGTTGGTTTACTGAAAGTGGAGAAGAATCGGTTGAGGTTGAATTAGATGTACGAGATCCATAGGTGTTGATGACTGAAAGGGGAAACTCAATTCGCATTTGAAATTCTCAACCCACTTCGTTCTCTTCTTCTTCCTCCAAAACTCTTCGTAAAACGATGTCTGCAATATCTTCTACCATTTTCCTTTTGTCACCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAATAAAATACTTGAAATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACATAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTTCAATTCGAAAATCGTCCCTGAACCGTTCCGTACCCCTACTGACAATCAAGGTCGGAGAAAAATTTGTTGACTGGTTCGTAAACATACTGTCACGCACCTCGAACTGAGCTTGTTTACGAAAAAAGTTAACTATATGTGTCGAAACTAGAGATGGAGTCCTTGGATACTGAAAACCTGTTGATGACGTTATAGAAACTCCACAAACAACCTTCTTCGAAACCGTTTTCTGCAAGAAAACAAGCGACGAAACGAATATACCGAGAATTCAGGGGTACTGTAACTGTGGAAATGAGCTAGCTGATACGGACCGAAACTCATTACGGTTTTCAGTTGCTTTTTCTCTTCGCTATTCTATTATTCTCGGACAAAAAAATCGGCAAAAGTGGCTGTGGCAGAAGGTTCCACAACGTCAA</canonical>
            <polymorphic>GCCGCAACGAATCACTTCCTCTGTTTTTCTAGAATAATTTGAAATATTTTCAACAATTCAACAGGTTCCACGGCAGGCTGTACTGGTGGAGTGAATAATGAAAACAGTGGGGACTGAGCGCCGAAAAGGGGAAGCTGAGCAGGGTTGTTAGCTATGAGTGATTGACAAAGAGCCAATTGCAAAGGATTCCAATGAGGTTGGGTAGTTGTAAGTTGAGAGGAAAACGATGAACTCAGAAGTTGGTTTACTGAAAGTGGAGAAGAATCGGTTGAGGTTGAATTAGATGTACGAGATCCATAGGTGTTGATGACTGAAAGGGGAAACTCAATTCGCATTTGAAATTCTCAACCCACTTCGTTCTCTTCTTCTTCCTCCAAAACTCTTCGTAAAACGATGTCTGCAATATCTTCTACCATTTTCCTTTTGTCACCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAATAAAATACTTGAAATAATTCWTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACATAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTTCAATTCGAAAATCGTCCCTGAACCGTTCCGTACCCCTACTGACAATCAAGGTCGGAGAAAAATTTGTTGACTGGTTCGTAAACATACTGTCACGCACCTCGAACTGAGCTTGTTTACGAAAAAAGTTAACTATATGTGTCGAAACTAGAGATGGAGTCCTTGGATACTGAAAACCTGTTGATGACGTTATAGAAACTCCACAAACAACCTTCTTCGAAACCGTTTTCTGCAAGAAAACAAGCGACGAAACGAATATACCGAGAATTCAGGGGTACTGTAACTGTGGAAATGAGCTAGCTGATACGGACCGAAACTCATTACGGTTTTCAGTTGCTTTTTCTCTTCGCTATTCTATTATTCTCGGACAAAAAAATCGGCAAAAGTGGCTGTGGCAGAAGGTTCCACAACGTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGAAATTCTCAACCCACT</pcr_primer_p1>
		<pcr_primer_p2>TGAAATGAGAGGAGTGACTAGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTGAAATTCTCAACCCACTTCGTTCTCTTCTTCTTCCTCCAAAACTCTTCGTAAAACGATGTCTGCAATATCTTCTACCATTTTCCTTTTGTCACCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAATAAAATACTTGAAATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACATAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCA</canonical_amplicon>
		<polymorphic_amplicon>ATTTGAAATTCTCAACCCACTTCGTTCTCTTCTTCTTCCTCCAAAACTCTTCGTAAAACGATGTCTGCAATATCTTCTACCATTTTCCTTTTGTCACCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAATAAAATACTTGAAATAATTCWTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACATAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32804</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>298010</contig_pos>
        <strand>+</strand>
        <context>AATGCGAACA[C/T]AGAGAATACG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACA</left_flank>
        <right_flank>AGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTTCAATT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATTTTCAACAATTCAACAGGTTCCACGGCAGGCTGTACTGGTGGAGTGAATAATGAAAACAGTGGGGACTGAGCGCCGAAAAGGGGAAGCTGAGCAGGGTTGTTAGCTATGAGTGATTGACAAAGAGCCAATTGCAAAGGATTCCAATGAGGTTGGGTAGTTGTAAGTTGAGAGGAAAACGATGAACTCAGAAGTTGGTTTACTGAAAGTGGAGAAGAATCGGTTGAGGTTGAATTAGATGTACGAGATCCATAGGTGTTGATGACTGAAAGGGGAAACTCAATTCGCATTTGAAATTCTCAACCCACTTCGTTCTCTTCTTCTTCCTCCAAAACTCTTCGTAAAACGATGTCTGCAATATCTTCTACCATTTTCCTTTTGTCACCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAATAAAATACTTGAAATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACATAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTTCAATTCGAAAATCGTCCCTGAACCGTTCCGTACCCCTACTGACAATCAAGGTCGGAGAAAAATTTGTTGACTGGTTCGTAAACATACTGTCACGCACCTCGAACTGAGCTTGTTTACGAAAAAAGTTAACTATATGTGTCGAAACTAGAGATGGAGTCCTTGGATACTGAAAACCTGTTGATGACGTTATAGAAACTCCACAAACAACCTTCTTCGAAACCGTTTTCTGCAAGAAAACAAGCGACGAAACGAATATACCGAGAATTCAGGGGTACTGTAACTGTGGAAATGAGCTAGCTGATACGGACCGAAACTCATTACGGTTTTCAGTTGCTTTTTCTCTTCGCTATTCTATTATTCTCGGACAAAAAAATCGGCAAAAGTGGCTGTGGCAGAAGGTTCCACAACGTCAACTACAGTAACCTGAAAATATTTTGATTCCGGATTTGTTATCT</canonical>
            <polymorphic>AATATTTTCAACAATTCAACAGGTTCCACGGCAGGCTGTACTGGTGGAGTGAATAATGAAAACAGTGGGGACTGAGCGCCGAAAAGGGGAAGCTGAGCAGGGTTGTTAGCTATGAGTGATTGACAAAGAGCCAATTGCAAAGGATTCCAATGAGGTTGGGTAGTTGTAAGTTGAGAGGAAAACGATGAACTCAGAAGTTGGTTTACTGAAAGTGGAGAAGAATCGGTTGAGGTTGAATTAGATGTACGAGATCCATAGGTGTTGATGACTGAAAGGGGAAACTCAATTCGCATTTGAAATTCTCAACCCACTTCGTTCTCTTCTTCTTCCTCCAAAACTCTTCGTAAAACGATGTCTGCAATATCTTCTACCATTTTCCTTTTGTCACCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAATAAAATACTTGAAATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACAYAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTTCAATTCGAAAATCGTCCCTGAACCGTTCCGTACCCCTACTGACAATCAAGGTCGGAGAAAAATTTGTTGACTGGTTCGTAAACATACTGTCACGCACCTCGAACTGAGCTTGTTTACGAAAAAAGTTAACTATATGTGTCGAAACTAGAGATGGAGTCCTTGGATACTGAAAACCTGTTGATGACGTTATAGAAACTCCACAAACAACCTTCTTCGAAACCGTTTTCTGCAAGAAAACAAGCGACGAAACGAATATACCGAGAATTCAGGGGTACTGTAACTGTGGAAATGAGCTAGCTGATACGGACCGAAACTCATTACGGTTTTCAGTTGCTTTTTCTCTTCGCTATTCTATTATTCTCGGACAAAAAAATCGGCAAAAGTGGCTGTGGCAGAAGGTTCCACAACGTCAACTACAGTAACCTGAAAATATTTTGATTCCGGATTTGTTATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTCTACCATTTTCCTTTTGT</pcr_primer_p1>
		<pcr_primer_p2>AACAAATTTTTCTCCGACCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTCTACCATTTTCCTTTTGTCACCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAATAAAATACTTGAAATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACATAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTTCAATTCGAAAATCGTCCCTGAACCGTTCCGTACCCCTACTGACAATCAAGGTCGGAGAAAAATTTGTT</canonical_amplicon>
		<polymorphic_amplicon>TCTTCTACCATTTTCCTTTTGTCACCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAATAAAATACTTGAAATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACAYAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTTCAATTCGAAAATCGTCCCTGAACCGTTCCGTACCCCTACTGACAATCAAGGTCGGAGAAAAATTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32805</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>298056</contig_pos>
        <strand>+</strand>
        <context>TTTCACTTTT[C/T]AATTCGARAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACATAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTT</left_flank>
        <right_flank>AATTCGAAAATCGTCCCTGAACCGTTCCGTACCCCTACTGACAATCAAGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTGAATAATGAAAACAGTGGGGACTGAGCGCCGAAAAGGGGAAGCTGAGCAGGGTTGTTAGCTATGAGTGATTGACAAAGAGCCAATTGCAAAGGATTCCAATGAGGTTGGGTAGTTGTAAGTTGAGAGGAAAACGATGAACTCAGAAGTTGGTTTACTGAAAGTGGAGAAGAATCGGTTGAGGTTGAATTAGATGTACGAGATCCATAGGTGTTGATGACTGAAAGGGGAAACTCAATTCGCATTTGAAATTCTCAACCCACTTCGTTCTCTTCTTCTTCCTCCAAAACTCTTCGTAAAACGATGTCTGCAATATCTTCTACCATTTTCCTTTTGTCACCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAATAAAATACTTGAAATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACATAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTTCAATTCGAAAATCGTCCCTGAACCGTTCCGTACCCCTACTGACAATCAAGGTCGGAGAAAAATTTGTTGACTGGTTCGTAAACATACTGTCACGCACCTCGAACTGAGCTTGTTTACGAAAAAAGTTAACTATATGTGTCGAAACTAGAGATGGAGTCCTTGGATACTGAAAACCTGTTGATGACGTTATAGAAACTCCACAAACAACCTTCTTCGAAACCGTTTTCTGCAAGAAAACAAGCGACGAAACGAATATACCGAGAATTCAGGGGTACTGTAACTGTGGAAATGAGCTAGCTGATACGGACCGAAACTCATTACGGTTTTCAGTTGCTTTTTCTCTTCGCTATTCTATTATTCTCGGACAAAAAAATCGGCAAAAGTGGCTGTGGCAGAAGGTTCCACAACGTCAACTACAGTAACCTGAAAATATTTTGATTCCGGATTTGTTATCTCGGTTTTCATGATTTTTCAGTGCCGCGACACTTCGAAACTAGTTAT</canonical>
            <polymorphic>GAGTGAATAATGAAAACAGTGGGGACTGAGCGCCGAAAAGGGGAAGCTGAGCAGGGTTGTTAGCTATGAGTGATTGACAAAGAGCCAATTGCAAAGGATTCCAATGAGGTTGGGTAGTTGTAAGTTGAGAGGAAAACGATGAACTCAGAAGTTGGTTTACTGAAAGTGGAGAAGAATCGGTTGAGGTTGAATTAGATGTACGAGATCCATAGGTGTTGATGACTGAAAGGGGAAACTCAATTCGCATTTGAAATTCTCAACCCACTTCGTTCTCTTCTTCTTCCTCCAAAACTCTTCGTAAAACGATGTCTGCAATATCTTCTACCATTTTCCTTTTGTCACCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAATAAAATACTTGAAATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACATAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTTYAATTCGAAAATCGTCCCTGAACCGTTCCGTACCCCTACTGACAATCAAGGTCGGAGAAAAATTTGTTGACTGGTTCGTAAACATACTGTCACGCACCTCGAACTGAGCTTGTTTACGAAAAAAGTTAACTATATGTGTCGAAACTAGAGATGGAGTCCTTGGATACTGAAAACCTGTTGATGACGTTATAGAAACTCCACAAACAACCTTCTTCGAAACCGTTTTCTGCAAGAAAACAAGCGACGAAACGAATATACCGAGAATTCAGGGGTACTGTAACTGTGGAAATGAGCTAGCTGATACGGACCGAAACTCATTACGGTTTTCAGTTGCTTTTTCTCTTCGCTATTCTATTATTCTCGGACAAAAAAATCGGCAAAAGTGGCTGTGGCAGAAGGTTCCACAACGTCAACTACAGTAACCTGAAAATATTTTGATTCCGGATTTGTTATCTCGGTTTTCATGATTTTTCAGTGCCGCGACACTTCGAAACTAGTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTCTACCATTTTCCTTTTGT</pcr_primer_p1>
		<pcr_primer_p2>AACAAATTTTTCTCCGACCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTCTACCATTTTCCTTTTGTCACCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAATAAAATACTTGAAATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACATAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTTCAATTCGAAAATCGTCCCTGAACCGTTCCGTACCCCTACTGACAATCAAGGTCGGAGAAAAATTTGTT</canonical_amplicon>
		<polymorphic_amplicon>TCTTCTACCATTTTCCTTTTGTCACCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAATAAAATACTTGAAATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACATAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTTYAATTCGAAAATCGTCCCTGAACCGTTCCGTACCCCTACTGACAATCAAGGTCGGAGAAAAATTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32806</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>298064</contig_pos>
        <strand>+</strand>
        <context>TTYAATTCGA[A/G]AATCGTCCCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTTCAATTCGA</left_flank>
        <right_flank>AATCGTCCCTGAACCGTTCCGTACCCCTACTGACAATCAAGGTCGGAGAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGAAAACAGTGGGGACTGAGCGCCGAAAAGGGGAAGCTGAGCAGGGTTGTTAGCTATGAGTGATTGACAAAGAGCCAATTGCAAAGGATTCCAATGAGGTTGGGTAGTTGTAAGTTGAGAGGAAAACGATGAACTCAGAAGTTGGTTTACTGAAAGTGGAGAAGAATCGGTTGAGGTTGAATTAGATGTACGAGATCCATAGGTGTTGATGACTGAAAGGGGAAACTCAATTCGCATTTGAAATTCTCAACCCACTTCGTTCTCTTCTTCTTCCTCCAAAACTCTTCGTAAAACGATGTCTGCAATATCTTCTACCATTTTCCTTTTGTCACCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAATAAAATACTTGAAATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACATAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTTCAATTCGAAAATCGTCCCTGAACCGTTCCGTACCCCTACTGACAATCAAGGTCGGAGAAAAATTTGTTGACTGGTTCGTAAACATACTGTCACGCACCTCGAACTGAGCTTGTTTACGAAAAAAGTTAACTATATGTGTCGAAACTAGAGATGGAGTCCTTGGATACTGAAAACCTGTTGATGACGTTATAGAAACTCCACAAACAACCTTCTTCGAAACCGTTTTCTGCAAGAAAACAAGCGACGAAACGAATATACCGAGAATTCAGGGGTACTGTAACTGTGGAAATGAGCTAGCTGATACGGACCGAAACTCATTACGGTTTTCAGTTGCTTTTTCTCTTCGCTATTCTATTATTCTCGGACAAAAAAATCGGCAAAAGTGGCTGTGGCAGAAGGTTCCACAACGTCAACTACAGTAACCTGAAAATATTTTGATTCCGGATTTGTTATCTCGGTTTTCATGATTTTTCAGTGCCGCGACACTTCGAAACTAGTTATTTCGAGAG</canonical>
            <polymorphic>AATGAAAACAGTGGGGACTGAGCGCCGAAAAGGGGAAGCTGAGCAGGGTTGTTAGCTATGAGTGATTGACAAAGAGCCAATTGCAAAGGATTCCAATGAGGTTGGGTAGTTGTAAGTTGAGAGGAAAACGATGAACTCAGAAGTTGGTTTACTGAAAGTGGAGAAGAATCGGTTGAGGTTGAATTAGATGTACGAGATCCATAGGTGTTGATGACTGAAAGGGGAAACTCAATTCGCATTTGAAATTCTCAACCCACTTCGTTCTCTTCTTCTTCCTCCAAAACTCTTCGTAAAACGATGTCTGCAATATCTTCTACCATTTTCCTTTTGTCACCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAATAAAATACTTGAAATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACATAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTTCAATTCGARAATCGTCCCTGAACCGTTCCGTACCCCTACTGACAATCAAGGTCGGAGAAAAATTTGTTGACTGGTTCGTAAACATACTGTCACGCACCTCGAACTGAGCTTGTTTACGAAAAAAGTTAACTATATGTGTCGAAACTAGAGATGGAGTCCTTGGATACTGAAAACCTGTTGATGACGTTATAGAAACTCCACAAACAACCTTCTTCGAAACCGTTTTCTGCAAGAAAACAAGCGACGAAACGAATATACCGAGAATTCAGGGGTACTGTAACTGTGGAAATGAGCTAGCTGATACGGACCGAAACTCATTACGGTTTTCAGTTGCTTTTTCTCTTCGCTATTCTATTATTCTCGGACAAAAAAATCGGCAAAAGTGGCTGTGGCAGAAGGTTCCACAACGTCAACTACAGTAACCTGAAAATATTTTGATTCCGGATTTGTTATCTCGGTTTTCATGATTTTTCAGTGCCGCGACACTTCGAAACTAGTTATTTCGAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>496 274 209 21</canonical_bands>
                <polymorphic_bands>705 274 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGAATACGCTTCCTTATCTAGT</pcr_primer_p1>
		<pcr_primer_p2>GGAGTTTCTATAACGTCATCAAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTTCAATTCGAAAATCGTCCCTGAACCGTTCCGTACCCCTACTGACAATCAAGGTCGGAGAAAAATTTGTTGACTGGTTCGTAAACATACTGTCACGCACCTCGAACTGAGCTTGTTTACGAAAAAAGTTAACTATATGTGTCGAAACTAGAGATGGAGTCCTTGGATACTGAAAACCTGTTGATGACGTTATAGAAACTCC</canonical_amplicon>
		<polymorphic_amplicon>AGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTTCAATTCGARAATCGTCCCTGAACCGTTCCGTACCCCTACTGACAATCAAGGTCGGAGAAAAATTTGTTGACTGGTTCGTAAACATACTGTCACGCACCTCGAACTGAGCTTGTTTACGAAAAAAGTTAACTATATGTGTCGAAACTAGAGATGGAGTCCTTGGATACTGAAAACCTGTTGATGACGTTATAGAAACTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32807</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>298176</contig_pos>
        <strand>+</strand>
        <context>TGTTTACGAA[A/G]AAAGTTAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGGTTCGTAAACATACTGTCACGCACCTCGAACTGAGCTTGTTTACGAA</left_flank>
        <right_flank>AAAGTTAACTATATGTGTCGAAACTAGAGATGGAGTCCTTGGATACTGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGTTGAGAGGAAAACGATGAACTCAGAAGTTGGTTTACTGAAAGTGGAGAAGAATCGGTTGAGGTTGAATTAGATGTACGAGATCCATAGGTGTTGATGACTGAAAGGGGAAACTCAATTCGCATTTGAAATTCTCAACCCACTTCGTTCTCTTCTTCTTCCTCCAAAACTCTTCGTAAAACGATGTCTGCAATATCTTCTACCATTTTCCTTTTGTCACCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAATAAAATACTTGAAATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACATAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTTCAATTCGAAAATCGTCCCTGAACCGTTCCGTACCCCTACTGACAATCAAGGTCGGAGAAAAATTTGTTGACTGGTTCGTAAACATACTGTCACGCACCTCGAACTGAGCTTGTTTACGAAAAAAGTTAACTATATGTGTCGAAACTAGAGATGGAGTCCTTGGATACTGAAAACCTGTTGATGACGTTATAGAAACTCCACAAACAACCTTCTTCGAAACCGTTTTCTGCAAGAAAACAAGCGACGAAACGAATATACCGAGAATTCAGGGGTACTGTAACTGTGGAAATGAGCTAGCTGATACGGACCGAAACTCATTACGGTTTTCAGTTGCTTTTTCTCTTCGCTATTCTATTATTCTCGGACAAAAAAATCGGCAAAAGTGGCTGTGGCAGAAGGTTCCACAACGTCAACTACAGTAACCTGAAAATATTTTGATTCCGGATTTGTTATCTCGGTTTTCATGATTTTTCAGTGCCGCGACACTTCGAAACTAGTTATTTCGAGAGCAGACATTTCGAAAGCGTGGCTAATGGATGAATTTCAGACTACAAAAAAATTTTAGGGCTTTCAAATATGCTTTTTCTCATATAGAACACATTCTGAAATTCGAGAAAATCC</canonical>
            <polymorphic>TAAGTTGAGAGGAAAACGATGAACTCAGAAGTTGGTTTACTGAAAGTGGAGAAGAATCGGTTGAGGTTGAATTAGATGTACGAGATCCATAGGTGTTGATGACTGAAAGGGGAAACTCAATTCGCATTTGAAATTCTCAACCCACTTCGTTCTCTTCTTCTTCCTCCAAAACTCTTCGTAAAACGATGTCTGCAATATCTTCTACCATTTTCCTTTTGTCACCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAATAAAATACTTGAAATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACATAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTTCAATTCGAAAATCGTCCCTGAACCGTTCCGTACCCCTACTGACAATCAAGGTCGGAGAAAAATTTGTTGACTGGTTCGTAAACATACTGTCACGCACCTCGAACTGAGCTTGTTTACGAARAAAGTTAACTATATGTGTCGAAACTAGAGATGGAGTCCTTGGATACTGAAAACCTGTTGATGACGTTATAGAAACTCCACAAACAACCTTCTTCGAAACCGTTTTCTGCAAGAAAACAAGCGACGAAACGAATATACCGAGAATTCAGGGGTACTGTAACTGTGGAAATGAGCTAGCTGATACGGACCGAAACTCATTACGGTTTTCAGTTGCTTTTTCTCTTCGCTATTCTATTATTCTCGGACAAAAAAATCGGCAAAAGTGGCTGTGGCAGAAGGTTCCACAACGTCAACTACAGTAACCTGAAAATATTTTGATTCCGGATTTGTTATCTCGGTTTTCATGATTTTTCAGTGCCGCGACACTTCGAAACTAGTTATTTCGAGAGCAGACATTTCGAAAGCGTGGCTAATGGATGAATTTCAGACTACAAAAAAATTTTAGGGCTTTCAAATATGCTTTTTCTCATATAGAACACATTCTGAAATTCGAGAAAATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATACGCTTCCTTATCTAGTCA</pcr_primer_p1>
		<pcr_primer_p2>TTGTTTGTGGAGTTTCTATAACG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTTCAATTCGAAAATCGTCCCTGAACCGTTCCGTACCCCTACTGACAATCAAGGTCGGAGAAAAATTTGTTGACTGGTTCGTAAACATACTGTCACGCACCTCGAACTGAGCTTGTTTACGAAAAAAGTTAACTATATGTGTCGAAACTAGAGATGGAGTCCTTGGATACTGAAAACCTGTTGATGACGTTATAGAAACTCCACAAACAA</canonical_amplicon>
		<polymorphic_amplicon>GAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTTCAATTCGAAAATCGTCCCTGAACCGTTCCGTACCCCTACTGACAATCAAGGTCGGAGAAAAATTTGTTGACTGGTTCGTAAACATACTGTCACGCACCTCGAACTGAGCTTGTTTACGAARAAAGTTAACTATATGTGTCGAAACTAGAGATGGAGTCCTTGGATACTGAAAACCTGTTGATGACGTTATAGAAACTCCACAAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32808</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>298193</contig_pos>
        <strand>+</strand>
        <context>AACTATATGT[A/G]TCGAAACTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTCACGCACCTCGAACTGAGCTTGTTTACGAAAAAAGTTAACTATATGT</left_flank>
        <right_flank>TCGAAACTAGAGATGGAGTCCTTGGATACTGAAAACCTGTTGATGACGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGAACTCAGAAGTTGGTTTACTGAAAGTGGAGAAGAATCGGTTGAGGTTGAATTAGATGTACGAGATCCATAGGTGTTGATGACTGAAAGGGGAAACTCAATTCGCATTTGAAATTCTCAACCCACTTCGTTCTCTTCTTCTTCCTCCAAAACTCTTCGTAAAACGATGTCTGCAATATCTTCTACCATTTTCCTTTTGTCACCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAATAAAATACTTGAAATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACATAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTTCAATTCGAAAATCGTCCCTGAACCGTTCCGTACCCCTACTGACAATCAAGGTCGGAGAAAAATTTGTTGACTGGTTCGTAAACATACTGTCACGCACCTCGAACTGAGCTTGTTTACGAAAAAAGTTAACTATATGTGTCGAAACTAGAGATGGAGTCCTTGGATACTGAAAACCTGTTGATGACGTTATAGAAACTCCACAAACAACCTTCTTCGAAACCGTTTTCTGCAAGAAAACAAGCGACGAAACGAATATACCGAGAATTCAGGGGTACTGTAACTGTGGAAATGAGCTAGCTGATACGGACCGAAACTCATTACGGTTTTCAGTTGCTTTTTCTCTTCGCTATTCTATTATTCTCGGACAAAAAAATCGGCAAAAGTGGCTGTGGCAGAAGGTTCCACAACGTCAACTACAGTAACCTGAAAATATTTTGATTCCGGATTTGTTATCTCGGTTTTCATGATTTTTCAGTGCCGCGACACTTCGAAACTAGTTATTTCGAGAGCAGACATTTCGAAAGCGTGGCTAATGGATGAATTTCAGACTACAAAAAAATTTTAGGGCTTTCAAATATGCTTTTTCTCATATAGAACACATTCTGAAATTCGAGAAAATCCAATTTTTAATTTTTTTT</canonical>
            <polymorphic>GATGAACTCAGAAGTTGGTTTACTGAAAGTGGAGAAGAATCGGTTGAGGTTGAATTAGATGTACGAGATCCATAGGTGTTGATGACTGAAAGGGGAAACTCAATTCGCATTTGAAATTCTCAACCCACTTCGTTCTCTTCTTCTTCCTCCAAAACTCTTCGTAAAACGATGTCTGCAATATCTTCTACCATTTTCCTTTTGTCACCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAATAAAATACTTGAAATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACATAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTTCAATTCGAAAATCGTCCCTGAACCGTTCCGTACCCCTACTGACAATCAAGGTCGGAGAAAAATTTGTTGACTGGTTCGTAAACATACTGTCACGCACCTCGAACTGAGCTTGTTTACGAAAAAAGTTAACTATATGTRTCGAAACTAGAGATGGAGTCCTTGGATACTGAAAACCTGTTGATGACGTTATAGAAACTCCACAAACAACCTTCTTCGAAACCGTTTTCTGCAAGAAAACAAGCGACGAAACGAATATACCGAGAATTCAGGGGTACTGTAACTGTGGAAATGAGCTAGCTGATACGGACCGAAACTCATTACGGTTTTCAGTTGCTTTTTCTCTTCGCTATTCTATTATTCTCGGACAAAAAAATCGGCAAAAGTGGCTGTGGCAGAAGGTTCCACAACGTCAACTACAGTAACCTGAAAATATTTTGATTCCGGATTTGTTATCTCGGTTTTCATGATTTTTCAGTGCCGCGACACTTCGAAACTAGTTATTTCGAGAGCAGACATTTCGAAAGCGTGGCTAATGGATGAATTTCAGACTACAAAAAAATTTTAGGGCTTTCAAATATGCTTTTTCTCATATAGAACACATTCTGAAATTCGAGAAAATCCAATTTTTAATTTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>123 100 97 85 77 73 70 62 49 47 43 42 40 31 16 14 13 8 6 4</canonical_bands>
                <polymorphic_bands>123 104 100 97 85 77 73 70 49 47 43 40 31 16 14 13 8 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATACGCTTCCTTATCTAGTCA</pcr_primer_p1>
		<pcr_primer_p2>TTGTTTGTGGAGTTTCTATAACG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTTCAATTCGAAAATCGTCCCTGAACCGTTCCGTACCCCTACTGACAATCAAGGTCGGAGAAAAATTTGTTGACTGGTTCGTAAACATACTGTCACGCACCTCGAACTGAGCTTGTTTACGAAAAAAGTTAACTATATGTGTCGAAACTAGAGATGGAGTCCTTGGATACTGAAAACCTGTTGATGACGTTATAGAAACTCCACAAACAA</canonical_amplicon>
		<polymorphic_amplicon>GAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTTCAATTCGAAAATCGTCCCTGAACCGTTCCGTACCCCTACTGACAATCAAGGTCGGAGAAAAATTTGTTGACTGGTTCGTAAACATACTGTCACGCACCTCGAACTGAGCTTGTTTACGAAAAAAGTTAACTATATGTRTCGAAACTAGAGATGGAGTCCTTGGATACTGAAAACCTGTTGATGACGTTATAGAAACTCCACAAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32809</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>298397</contig_pos>
        <strand>+</strand>
        <context>TGCTTTTTCT[C/G]TTCGCTATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGCTAGCTGATACGGACCGAAACTCATTACGGTTTTCAGTTGCTTTTTCT</left_flank>
        <right_flank>TTCGCTATTCTATTATTCTCGGACAAAAAAATCGGCAAAAGTGGCTGTGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAATAAAATACTTGAAATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACATAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTTCAATTCGAAAATCGTCCCTGAACCGTTCCGTACCCCTACTGACAATCAAGGTCGGAGAAAAATTTGTTGACTGGTTCGTAAACATACTGTCACGCACCTCGAACTGAGCTTGTTTACGAAAAAAGTTAACTATATGTGTCGAAACTAGAGATGGAGTCCTTGGATACTGAAAACCTGTTGATGACGTTATAGAAACTCCACAAACAACCTTCTTCGAAACCGTTTTCTGCAAGAAAACAAGCGACGAAACGAATATACCGAGAATTCAGGGGTACTGTAACTGTGGAAATGAGCTAGCTGATACGGACCGAAACTCATTACGGTTTTCAGTTGCTTTTTCTCTTCGCTATTCTATTATTCTCGGACAAAAAAATCGGCAAAAGTGGCTGTGGCAGAAGGTTCCACAACGTCAACTACAGTAACCTGAAAATATTTTGATTCCGGATTTGTTATCTCGGTTTTCATGATTTTTCAGTGCCGCGACACTTCGAAACTAGTTATTTCGAGAGCAGACATTTCGAAAGCGTGGCTAATGGATGAATTTCAGACTACAAAAAAATTTTAGGGCTTTCAAATATGCTTTTTCTCATATAGAACACATTCTGAAATTCGAGAAAATCCAATTTTTAATTTTTTTTTCAAAAACTTTTTTTTTGGAGTTTCCAAATGTCTTCTATCAGACAAAAGCATATTTGAAAACCCAAAAATAGTTTTTGTAGTCTCATATTCACCCATTCGCCTGTATGATGCCGGAAAAATTGACTGAAAAACGCACAAAAATCAAAAAAATAAATCCGGAATATAAAAATATTTTCAGGTTACTGTAATTGTCGTTTCGTTGT</canonical>
            <polymorphic>CCATCGATGTCAATCACAACTGCGACCAGCTCTGCAAATCGATAAAATAATAAAATACTTGAAATAATTCTTACCGTTCTTTCGGTCGCTCATACCGGAATGAATGCGAACATAGAGAATACGCTTCCTTATCTAGTCACTCCTCTCATTTCACTTTTCAATTCGAAAATCGTCCCTGAACCGTTCCGTACCCCTACTGACAATCAAGGTCGGAGAAAAATTTGTTGACTGGTTCGTAAACATACTGTCACGCACCTCGAACTGAGCTTGTTTACGAAAAAAGTTAACTATATGTGTCGAAACTAGAGATGGAGTCCTTGGATACTGAAAACCTGTTGATGACGTTATAGAAACTCCACAAACAACCTTCTTCGAAACCGTTTTCTGCAAGAAAACAAGCGACGAAACGAATATACCGAGAATTCAGGGGTACTGTAACTGTGGAAATGAGCTAGCTGATACGGACCGAAACTCATTACGGTTTTCAGTTGCTTTTTCTSTTCGCTATTCTATTATTCTCGGACAAAAAAATCGGCAAAAGTGGCTGTGGCAGAAGGTTCCACAACGTCAACTACAGTAACCTGAAAATATTTTGATTCCGGATTTGTTATCTCGGTTTTCATGATTTTTCAGTGCCGCGACACTTCGAAACTAGTTATTTCGAGAGCAGACATTTCGAAAGCGTGGCTAATGGATGAATTTCAGACTACAAAAAAATTTTAGGGCTTTCAAATATGCTTTTTCTCATATAGAACACATTCTGAAATTCGAGAAAATCCAATTTTTAATTTTTTTTTCAAAAACTTTTTTTTTGGAGTTTCCAAATGTCTTCTATCAGACAAAAGCATATTTGAAAACCCAAAAATAGTTTTTGTAGTCTCATATTCACCCATTCGCCTGTATGATGCCGGAAAAATTGACTGAAAAACGCACAAAAATCAAAAAAATAAATCCGGAATATAAAAATATTTTCAGGTTACTGTAATTGTCGTTTCGTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTGTAACTGTGGAAATGAGCTA</pcr_primer_p1>
		<pcr_primer_p2>TTGTAGTCTGAAATTCATCCATTA</pcr_primer_p2>
		<pcr_amplicon_size>281</pcr_amplicon_size>
		<canonical_amplicon>ACTGTAACTGTGGAAATGAGCTAGCTGATACGGACCGAAACTCATTACGGTTTTCAGTTGCTTTTTCTCTTCGCTATTCTATTATTCTCGGACAAAAAAATCGGCAAAAGTGGCTGTGGCAGAAGGTTCCACAACGTCAACTACAGTAACCTGAAAATATTTTGATTCCGGATTTGTTATCTCGGTTTTCATGATTTTTCAGTGCCGCGACACTTCGAAACTAGTTATTTCGAGAGCAGACATTTCGAAAGCGTGGCTAATGGATGAATTTCAGACTACAA</canonical_amplicon>
		<polymorphic_amplicon>ACTGTAACTGTGGAAATGAGCTAGCTGATACGGACCGAAACTCATTACGGTTTTCAGTTGCTTTTTCTSTTCGCTATTCTATTATTCTCGGACAAAAAAATCGGCAAAAGTGGCTGTGGCAGAAGGTTCCACAACGTCAACTACAGTAACCTGAAAATATTTTGATTCCGGATTTGTTATCTCGGTTTTCATGATTTTTCAGTGCCGCGACACTTCGAAACTAGTTATTTCGAGAGCAGACATTTCGAAAGCGTGGCTAATGGATGAATTTCAGACTACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32810</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>299008</contig_pos>
        <strand>+</strand>
        <context>AAATATTTTG[G/T]TAATCAAGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTAATAAATATGTTGTTTTCTTTCTGAACCATTGATTTCGAAATATTTTG</left_flank>
        <right_flank>TAATCAAGTAGAGCATTTTTATCCAGTATTCAGTTTTTAATGTTTTTCAC</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCGGTTTTCATGATTTTTCAGTGCCGCGACACTTCGAAACTAGTTATTTCGAGAGCAGACATTTCGAAAGCGTGGCTAATGGATGAATTTCAGACTACAAAAAAATTTTAGGGCTTTCAAATATGCTTTTTCTCATATAGAACACATTCTGAAATTCGAGAAAATCCAATTTTTAATTTTTTTTTCAAAAACTTTTTTTTTGGAGTTTCCAAATGTCTTCTATCAGACAAAAGCATATTTGAAAACCCAAAAATAGTTTTTGTAGTCTCATATTCACCCATTCGCCTGTATGATGCCGGAAAAATTGACTGAAAAACGCACAAAAATCAAAAAAATAAATCCGGAATATAAAAATATTTTCAGGTTACTGTAATTGTCGTTTCGTTGTGGGACCGTCGGCCACGGTCACCAACGTTCCTCTTCCACAACTCCAATTTTTTGTAGCAGACTAATAAATATGTTGTTTTCTTTCTGAACCATTGATTTCGAAATATTTTGTTAATCAAGTAGAGCATTTTTATCCAGTATTCAGTTTTTAATGTTTTTCACATATTTTCGTACTGTAAACAATCAAGTAATCTATCCGACTCATCGCGAGATTAAGTATCTGACTCCGATTCAGATTTTGTGTTAGGATTACATGAGAATCGTAAGACTCCTTGTAACGGATAATCCAGTGTTGATGAGAAAGAAGTCACTCCCACTGATTGGCAGATATTAGTCATTCCTTCTTCTTACGACATTGAATGCGTCTGCTCTTAATATTCCTCCTCTTCTTTTCGCAAGAATGTTTAGCTATCAAGGTTAGTTCATTATTTCAATTCTTCTCAAAAAAAATCTGCAGGTGAAAGTGGCTCATATTGGAGCAGTCGGAGCAATGAAAAACTCGGAAAAGATTTTGCAACTCTCGAAAGAACAACTGATTCAGGAAGGTGTTCTTGGTGATGATTTTCAGATTGAGTTAGAGCTCATTTGTTATTTCGAAAATATATTTTTTAC</canonical>
            <polymorphic>CTCGGTTTTCATGATTTTTCAGTGCCGCGACACTTCGAAACTAGTTATTTCGAGAGCAGACATTTCGAAAGCGTGGCTAATGGATGAATTTCAGACTACAAAAAAATTTTAGGGCTTTCAAATATGCTTTTTCTCATATAGAACACATTCTGAAATTCGAGAAAATCCAATTTTTAATTTTTTTTTCAAAAACTTTTTTTTTGGAGTTTCCAAATGTCTTCTATCAGACAAAAGCATATTTGAAAACCCAAAAATAGTTTTTGTAGTCTCATATTCACCCATTCGCCTGTATGATGCCGGAAAAATTGACTGAAAAACGCACAAAAATCAAAAAAATAAATCCGGAATATAAAAATATTTTCAGGTTACTGTAATTGTCGTTTCGTTGTGGGACCGTCGGCCACGGTCACCAACGTTCCTCTTCCACAACTCCAATTTTTTGTAGCAGACTAATAAATATGTTGTTTTCTTTCTGAACCATTGATTTCGAAATATTTTGKTAATCAAGTAGAGCATTTTTATCCAGTATTCAGTTTTTAATGTTTTTCACATATTTTCGTACTGTAAACAATCAAGTAATCTATCCGACTCATCGCGAGATTAAGTATCTGACTCCGATTCAGATTTTGTGTTAGGATTACATGAGAATCGTAAGACTCCTTGTAACGGATAATCCAGTGTTGATGAGAAAGAAGTCACTCCCACTGATTGGCAGATATTAGTCATTCCTTCTTCTTACGACATTGAATGCGTCTGCTCTTAATATTCCTCCTCTTCTTTTCGCAAGAATGTTTAGCTATCAAGGTTAGTTCATTATTTCAATTCTTCTCAAAAAAAATCTGCAGGTGAAAGTGGCTCATATTGGAGCAGTCGGAGCAATGAAAAACTCGGAAAAGATTTTGCAACTCTCGAAAGAACAACTGATTCAGGAAGGTGTTCTTGGTGATGATTTTCAGATTGAGTTAGAGCTCATTTGTTATTTCGAAAATATATTTTTTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>326 240 174 159 64 37</canonical_bands>
                <polymorphic_bands>363 240 174 159 64</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTAGTCTCATATTCACCCATTC</pcr_primer_p1>
		<pcr_primer_p2>GTACGAAAATATGTGAAAAACATT</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>TGTAGTCTCATATTCACCCATTCGCCTGTATGATGCCGGAAAAATTGACTGAAAAACGCACAAAAATCAAAAAAATAAATCCGGAATATAAAAATATTTTCAGGTTACTGTAATTGTCGTTTCGTTGTGGGACCGTCGGCCACGGTCACCAACGTTCCTCTTCCACAACTCCAATTTTTTGTAGCAGACTAATAAATATGTTGTTTTCTTTCTGAACCATTGATTTCGAAATATTTTGTTAATCAAGTAGAGCATTTTTATCCAGTATTCAGTTTTTAATGTTTTTCACATATTTTCGTAC</canonical_amplicon>
		<polymorphic_amplicon>TGTAGTCTCATATTCACCCATTCGCCTGTATGATGCCGGAAAAATTGACTGAAAAACGCACAAAAATCAAAAAAATAAATCCGGAATATAAAAATATTTTCAGGTTACTGTAATTGTCGTTTCGTTGTGGGACCGTCGGCCACGGTCACCAACGTTCCTCTTCCACAACTCCAATTTTTTGTAGCAGACTAATAAATATGTTGTTTTCTTTCTGAACCATTGATTTCGAAATATTTTGKTAATCAAGTAGAGCATTTTTATCCAGTATTCAGTTTTTAATGTTTTTCACATATTTTCGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32811</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>299046</contig_pos>
        <strand>+</strand>
        <context>ATTCAGTTTT[A/T]AATGTTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGAAATATTTTGTTAATCAAGTAGAGCATTTTTATCCAGTATTCAGTTTT</left_flank>
        <right_flank>AATGTTTTTCACATATTTTCGTACTGTAAACAATCAAGTAATCTATCCGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTAGTTATTTCGAGAGCAGACATTTCGAAAGCGTGGCTAATGGATGAATTTCAGACTACAAAAAAATTTTAGGGCTTTCAAATATGCTTTTTCTCATATAGAACACATTCTGAAATTCGAGAAAATCCAATTTTTAATTTTTTTTTCAAAAACTTTTTTTTTGGAGTTTCCAAATGTCTTCTATCAGACAAAAGCATATTTGAAAACCCAAAAATAGTTTTTGTAGTCTCATATTCACCCATTCGCCTGTATGATGCCGGAAAAATTGACTGAAAAACGCACAAAAATCAAAAAAATAAATCCGGAATATAAAAATATTTTCAGGTTACTGTAATTGTCGTTTCGTTGTGGGACCGTCGGCCACGGTCACCAACGTTCCTCTTCCACAACTCCAATTTTTTGTAGCAGACTAATAAATATGTTGTTTTCTTTCTGAACCATTGATTTCGAAATATTTTGTTAATCAAGTAGAGCATTTTTATCCAGTATTCAGTTTTTAATGTTTTTCACATATTTTCGTACTGTAAACAATCAAGTAATCTATCCGACTCATCGCGAGATTAAGTATCTGACTCCGATTCAGATTTTGTGTTAGGATTACATGAGAATCGTAAGACTCCTTGTAACGGATAATCCAGTGTTGATGAGAAAGAAGTCACTCCCACTGATTGGCAGATATTAGTCATTCCTTCTTCTTACGACATTGAATGCGTCTGCTCTTAATATTCCTCCTCTTCTTTTCGCAAGAATGTTTAGCTATCAAGGTTAGTTCATTATTTCAATTCTTCTCAAAAAAAATCTGCAGGTGAAAGTGGCTCATATTGGAGCAGTCGGAGCAATGAAAAACTCGGAAAAGATTTTGCAACTCTCGAAAGAACAACTGATTCAGGAAGGTGTTCTTGGTGATGATTTTCAGATTGAGTTAGAGCTCATTTGTTATTTCGAAAATATATTTTTTACAATCTCTCAGAATTCTAAACCAAATGGGATGTGGTGAA</canonical>
            <polymorphic>AACTAGTTATTTCGAGAGCAGACATTTCGAAAGCGTGGCTAATGGATGAATTTCAGACTACAAAAAAATTTTAGGGCTTTCAAATATGCTTTTTCTCATATAGAACACATTCTGAAATTCGAGAAAATCCAATTTTTAATTTTTTTTTCAAAAACTTTTTTTTTGGAGTTTCCAAATGTCTTCTATCAGACAAAAGCATATTTGAAAACCCAAAAATAGTTTTTGTAGTCTCATATTCACCCATTCGCCTGTATGATGCCGGAAAAATTGACTGAAAAACGCACAAAAATCAAAAAAATAAATCCGGAATATAAAAATATTTTCAGGTTACTGTAATTGTCGTTTCGTTGTGGGACCGTCGGCCACGGTCACCAACGTTCCTCTTCCACAACTCCAATTTTTTGTAGCAGACTAATAAATATGTTGTTTTCTTTCTGAACCATTGATTTCGAAATATTTTGTTAATCAAGTAGAGCATTTTTATCCAGTATTCAGTTTTWAATGTTTTTCACATATTTTCGTACTGTAAACAATCAAGTAATCTATCCGACTCATCGCGAGATTAAGTATCTGACTCCGATTCAGATTTTGTGTTAGGATTACATGAGAATCGTAAGACTCCTTGTAACGGATAATCCAGTGTTGATGAGAAAGAAGTCACTCCCACTGATTGGCAGATATTAGTCATTCCTTCTTCTTACGACATTGAATGCGTCTGCTCTTAATATTCCTCCTCTTCTTTTCGCAAGAATGTTTAGCTATCAAGGTTAGTTCATTATTTCAATTCTTCTCAAAAAAAATCTGCAGGTGAAAGTGGCTCATATTGGAGCAGTCGGAGCAATGAAAAACTCGGAAAAGATTTTGCAACTCTCGAAAGAACAACTGATTCAGGAAGGTGTTCTTGGTGATGATTTTCAGATTGAGTTAGAGCTCATTTGTTATTTCGAAAATATATTTTTTACAATCTCTCAGAATTCTAAACCAAATGGGATGTGGTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>326 278 159 136 64 37</canonical_bands>
                <polymorphic_bands>326 278 159 136 101</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATGTTGTTTTCTTTCTGAACC</pcr_primer_p1>
		<pcr_primer_p2>AGTGACTTCTTTCTCATCAACAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATATGTTGTTTTCTTTCTGAACCATTGATTTCGAAATATTTTGTTAATCAAGTAGAGCATTTTTATCCAGTATTCAGTTTTTAATGTTTTTCACATATTTTCGTACTGTAAACAATCAAGTAATCTATCCGACTCATCGCGAGATTAAGTATCTGACTCCGATTCAGATTTTGTGTTAGGATTACATGAGAATCGTAAGACTCCTTGTAACGGATAATCCAGTGTTGATGAGAAAGAAGTCACT</canonical_amplicon>
		<polymorphic_amplicon>ATATGTTGTTTTCTTTCTGAACCATTGATTTCGAAATATTTTGTTAATCAAGTAGAGCATTTTTATCCAGTATTCAGTTTTWAATGTTTTTCACATATTTTCGTACTGTAAACAATCAAGTAATCTATCCGACTCATCGCGAGATTAAGTATCTGACTCCGATTCAGATTTTGTGTTAGGATTACATGAGAATCGTAAGACTCCTTGTAACGGATAATCCAGTGTTGATGAGAAAGAAGTCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32812</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>303220</contig_pos>
        <strand>+</strand>
        <context>CAAGGTACGG[A/G]ATTACGGTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAGCAAATTCGACGACGCCATCAACAAACACTCAGCTTACAAGGTACGG</left_flank>
        <right_flank>ATTACGGTTGTCTGGTCTAATGTACTTCTTCTTAGTGACTCATAAGCAGC</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGAACTGGAATGTTAGAGGAAGCCAACGTTCGAGCAGATAAACTTTTGAGTCAGCTTCTTCCAAAATATGTGGCAAATGAGTTGAAAATGGGTCGATCTGTTCCACCAAAGACATTCAATATGGCCTCTGTTATGTTCAGGTGAAAAACAATGGATTACCGTACCCCTAGACAACTGTGAGCTCAATTATCTCGATTCATGTGAAAGTTATTGAAAATTTGTCAACAGCTAAATTATTTATCATAATATAACTAATATTTCACAGTTGACCGAATTTTTATATCTTTCACAGGAATCAAAATAACTGAGCTTAAAGTTGAGCGAGCTTTTATTAAAGAAAGTACTTTATATTTTCAAAAATGTTGGTTTTCAGTGACATTGTCGGATTCACCACAATTTGCTCTTCGTCTTCTCCACTTGAAGTTGTCAGTATGTTGAATAGTATCTACAGCAAATTCGACGACGCCATCAACAAACACTCAGCTTACAAGGTACGGGATTACGGTTGTCTGGTCTAATGTACTTCTTCTTAGTGACTCATAAGCAGCTCTTAAAATTTTAATCCATTCCAGGTCGAAACCATTGGCGACGCCTACATGATAGTGTCCGGAATTCCAGAAGAAAATGGAAATGAGCATATCAGGAACATTTGTAACACTGCTCTTGAACTAATGCTTCTTCTCAAAACTTATGAAATTCCTCATCGTCGAAATGTCAAACTCCGAATCCGTCTTGGTATCCACACGGGAACCGTAGCCGCAGGTGTCGTCGGTCTCACTGCTCCTCGTTATTGTCTTTTCGGAGACACTGTCAACGTGGCATCCCGAATGGAGTCTACCAGTGAGCCGGAGAAAATTCAAATGAGTCAAGAGGCGCGTGACTTCTGCCTCCGCTACTATCAAGAGTTCCAAATCGTGCTTCGTGGCGTCGTTGAGGCAAAAGGCAAGGGACCGGTGACGACGTACTGGCTGTTGGGAAAACAATCCGAGAGCCAGATG</canonical>
            <polymorphic>AGAGAACTGGAATGTTAGAGGAAGCCAACGTTCGAGCAGATAAACTTTTGAGTCAGCTTCTTCCAAAATATGTGGCAAATGAGTTGAAAATGGGTCGATCTGTTCCACCAAAGACATTCAATATGGCCTCTGTTATGTTCAGGTGAAAAACAATGGATTACCGTACCCCTAGACAACTGTGAGCTCAATTATCTCGATTCATGTGAAAGTTATTGAAAATTTGTCAACAGCTAAATTATTTATCATAATATAACTAATATTTCACAGTTGACCGAATTTTTATATCTTTCACAGGAATCAAAATAACTGAGCTTAAAGTTGAGCGAGCTTTTATTAAAGAAAGTACTTTATATTTTCAAAAATGTTGGTTTTCAGTGACATTGTCGGATTCACCACAATTTGCTCTTCGTCTTCTCCACTTGAAGTTGTCAGTATGTTGAATAGTATCTACAGCAAATTCGACGACGCCATCAACAAACACTCAGCTTACAAGGTACGGRATTACGGTTGTCTGGTCTAATGTACTTCTTCTTAGTGACTCATAAGCAGCTCTTAAAATTTTAATCCATTCCAGGTCGAAACCATTGGCGACGCCTACATGATAGTGTCCGGAATTCCAGAAGAAAATGGAAATGAGCATATCAGGAACATTTGTAACACTGCTCTTGAACTAATGCTTCTTCTCAAAACTTATGAAATTCCTCATCGTCGAAATGTCAAACTCCGAATCCGTCTTGGTATCCACACGGGAACCGTAGCCGCAGGTGTCGTCGGTCTCACTGCTCCTCGTTATTGTCTTTTCGGAGACACTGTCAACGTGGCATCCCGAATGGAGTCTACCAGTGAGCCGGAGAAAATTCAAATGAGTCAAGAGGCGCGTGACTTCTGCCTCCGCTACTATCAAGAGTTCCAAATCGTGCTTCGTGGCGTCGTTGAGGCAAAAGGCAAGGGACCGGTGACGACGTACTGGCTGTTGGGAAAACAATCCGAGAGCCAGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCCACTTGAAGTTGTCAGTAT</pcr_primer_p1>
		<pcr_primer_p2>CAGTGTTACAAATGTTCCTGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTCCACTTGAAGTTGTCAGTATGTTGAATAGTATCTACAGCAAATTCGACGACGCCATCAACAAACACTCAGCTTACAAGGTACGGGATTACGGTTGTCTGGTCTAATGTACTTCTTCTTAGTGACTCATAAGCAGCTCTTAAAATTTTAATCCATTCCAGGTCGAAACCATTGGCGACGCCTACATGATAGTGTCCGGAATTCCAGAAGAAAATGGAAATGAGCATATCAGGAACATTTGTAACACTG</canonical_amplicon>
		<polymorphic_amplicon>TCTCCACTTGAAGTTGTCAGTATGTTGAATAGTATCTACAGCAAATTCGACGACGCCATCAACAAACACTCAGCTTACAAGGTACGGRATTACGGTTGTCTGGTCTAATGTACTTCTTCTTAGTGACTCATAAGCAGCTCTTAAAATTTTAATCCATTCCAGGTCGAAACCATTGGCGACGCCTACATGATAGTGTCCGGAATTCCAGAAGAAAATGGAAATGAGCATATCAGGAACATTTGTAACACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32813</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>303462</contig_pos>
        <strand>+</strand>
        <context>GTCTTGGTAT[C/T]CACACGGGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATGAAATTCCTCATCGTCGAAATGTCAAACTCCGAATCCGTCTTGGTAT</left_flank>
        <right_flank>CACACGGGAACCGTAGCCGCAGGTGTCGTCGGTCTCACTGCTCCTCGTTA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATAATATAACTAATATTTCACAGTTGACCGAATTTTTATATCTTTCACAGGAATCAAAATAACTGAGCTTAAAGTTGAGCGAGCTTTTATTAAAGAAAGTACTTTATATTTTCAAAAATGTTGGTTTTCAGTGACATTGTCGGATTCACCACAATTTGCTCTTCGTCTTCTCCACTTGAAGTTGTCAGTATGTTGAATAGTATCTACAGCAAATTCGACGACGCCATCAACAAACACTCAGCTTACAAGGTACGGGATTACGGTTGTCTGGTCTAATGTACTTCTTCTTAGTGACTCATAAGCAGCTCTTAAAATTTTAATCCATTCCAGGTCGAAACCATTGGCGACGCCTACATGATAGTGTCCGGAATTCCAGAAGAAAATGGAAATGAGCATATCAGGAACATTTGTAACACTGCTCTTGAACTAATGCTTCTTCTCAAAACTTATGAAATTCCTCATCGTCGAAATGTCAAACTCCGAATCCGTCTTGGTATCCACACGGGAACCGTAGCCGCAGGTGTCGTCGGTCTCACTGCTCCTCGTTATTGTCTTTTCGGAGACACTGTCAACGTGGCATCCCGAATGGAGTCTACCAGTGAGCCGGAGAAAATTCAAATGAGTCAAGAGGCGCGTGACTTCTGCCTCCGCTACTATCAAGAGTTCCAAATCGTGCTTCGTGGCGTCGTTGAGGCAAAAGGCAAGGGACCGGTGACGACGTACTGGCTGTTGGGAAAACAATCCGAGAGCCAGATGCAACAAAAAAATTTCTCACAGCTCGGTATCTAGACAAATCTCCGTATAAGAGCCCCGCTTAGATTCTTGTGTATTTCCCTTAATGCATTATATCCTCGGATCAACGATGCATTTACTTGATTATACATATATTTTTGAGAATTCCAGTTAATAAATAATATATTCTGTATGTTGTGAATTCGAATATTTCAGAGGGATAGAGGAAGAGGGAAAATCATACCTCAGTGTCCGAGACTCTACCC</canonical>
            <polymorphic>TCATAATATAACTAATATTTCACAGTTGACCGAATTTTTATATCTTTCACAGGAATCAAAATAACTGAGCTTAAAGTTGAGCGAGCTTTTATTAAAGAAAGTACTTTATATTTTCAAAAATGTTGGTTTTCAGTGACATTGTCGGATTCACCACAATTTGCTCTTCGTCTTCTCCACTTGAAGTTGTCAGTATGTTGAATAGTATCTACAGCAAATTCGACGACGCCATCAACAAACACTCAGCTTACAAGGTACGGGATTACGGTTGTCTGGTCTAATGTACTTCTTCTTAGTGACTCATAAGCAGCTCTTAAAATTTTAATCCATTCCAGGTCGAAACCATTGGCGACGCCTACATGATAGTGTCCGGAATTCCAGAAGAAAATGGAAATGAGCATATCAGGAACATTTGTAACACTGCTCTTGAACTAATGCTTCTTCTCAAAACTTATGAAATTCCTCATCGTCGAAATGTCAAACTCCGAATCCGTCTTGGTATYCACACGGGAACCGTAGCCGCAGGTGTCGTCGGTCTCACTGCTCCTCGTTATTGTCTTTTCGGAGACACTGTCAACGTGGCATCCCGAATGGAGTCTACCAGTGAGCCGGAGAAAATTCAAATGAGTCAAGAGGCGCGTGACTTCTGCCTCCGCTACTATCAAGAGTTCCAAATCGTGCTTCGTGGCGTCGTTGAGGCAAAAGGCAAGGGACCGGTGACGACGTACTGGCTGTTGGGAAAACAATCCGAGAGCCAGATGCAACAAAAAAATTTCTCACAGCTCGGTATCTAGACAAATCTCCGTATAAGAGCCCCGCTTAGATTCTTGTGTATTTCCCTTAATGCATTATATCCTCGGATCAACGATGCATTTACTTGATTATACATATATTTTTGAGAATTCCAGTTAATAAATAATATATTCTGTATGTTGTGAATTCGAATATTTCAGAGGGATAGAGGAAGAGGGAAAATCATACCTCAGTGTCCGAGACTCTACCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTAATGCTTCTTCTCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CGATTTGGAACTCTTGATAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAACTAATGCTTCTTCTCAAAACTTATGAAATTCCTCATCGTCGAAATGTCAAACTCCGAATCCGTCTTGGTATCCACACGGGAACCGTAGCCGCAGGTGTCGTCGGTCTCACTGCTCCTCGTTATTGTCTTTTCGGAGACACTGTCAACGTGGCATCCCGAATGGAGTCTACCAGTGAGCCGGAGAAAATTCAAATGAGTCAAGAGGCGCGTGACTTCTGCCTCCGCTACTATCAAGAGTTCCAAATCG</canonical_amplicon>
		<polymorphic_amplicon>GAACTAATGCTTCTTCTCAAAACTTATGAAATTCCTCATCGTCGAAATGTCAAACTCCGAATCCGTCTTGGTATYCACACGGGAACCGTAGCCGCAGGTGTCGTCGGTCTCACTGCTCCTCGTTATTGTCTTTTCGGAGACACTGTCAACGTGGCATCCCGAATGGAGTCTACCAGTGAGCCGGAGAAAATTCAAATGAGTCAAGAGGCGCGTGACTTCTGCCTCCGCTACTATCAAGAGTTCCAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32814</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>305397</contig_pos>
        <strand></strand>
        <context>GAATCCTGaa[A/G]taggaagtcg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCATGTAGAAAATAAAAGTAAACTCTGGCGAAAGTTGGCGAATCCTGAA</left_flank>
        <right_flank>TAGGAAGTCGGTGATGTAGTAGATGGTCGGACGCAGATTTGGCGAACTTT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCGAAATTTGGTGGTAATCTCTGTTGGCAAACTGTTGATGGAAATATTAGTTGATGTAATGGATTGTGTTTGAGTTTGAAGGAATTGTTAAGTTTCCAATAAAAACATGGCATTATAATTAGTATGTATTTTTTAAATATTTTTCTTCCTCAGTTTTGATTTATAATTGATAATTTATACTCAACTTGAAAATTAAAGTTTCAAAAGTTGTGGTACTTTAGATGATAACAATTTTTCCGTTGAAAAAAGTGATGCCGATTGCGAGAAAACAACAACATAAAATGTATGCCCTCTAAAAAGTCAACTTTTGGTGTCTGTAAAAGGACTTAAAACTCGTATTTTATATACAATCTCTAAACCAAAGCCCAAACGGACTACCGAATTTCCCCTCATAGAAGACCTCCCAAACCTTTAAAATCTTTCATAGGAATCGAGATAATTGAGCTCACTCATGTAGAAAATAAAAGTAAACTCTGGCGAAAGTTGGCGAATCCTGAAATAGGAAGTCGGTGATGTAGTAGATGGTCGGACGCAGATTTGGCGAACTTTGGCGAACTCTACGCGAGTTTTGAATGCGTTGCGTGCAAACGACGCGTGTGTTCCGAATTTTGCATCACCTATTTTTTTTCAGTCAGTTTTTTTCACTATCAGAAATTTTTATTTTCCGACTTGTTTGTAGAGAAATAAGAGAACCTTGATTACCTACCTGCTTTGAGTGACACTTCAAGGTGGTTGTATTCGTTTGTTCACTTTTTTCTTACCTCCAAAACTTTGTTCTCCTTCTTCTTTTTTTTTTCAATCCAATTCCTTCATGCACCCTTCGCACATTGATTTATGCACTTCAGCAGTTCCCACAAAAAACCAGGTCACCAGAACTTCTGGCGCCTGTACCCTCTTCTTCGTAAAAATTCGAAATCCCATCATGATCTACCAGTGACAAATGACAATCGCAACACGTTAATTGGCCCAACAGAGAAAACACTCGAGAGACACAAGATA</canonical>
            <polymorphic>GGCGAAATTTGGTGGTAATCTCTGTTGGCAAACTGTTGATGGAAATATTAGTTGATGTAATGGATTGTGTTTGAGTTTGAAGGAATTGTTAAGTTTCCAATAAAAACATGGCATTATAATTAGTATGTATTTTTTAAATATTTTTCTTCCTCAGTTTTGATTTATAATTGATAATTTATACTCAACTTGAAAATTAAAGTTTCAAAAGTTGTGGTACTTTAGATGATAACAATTTTTCCGTTGAAAAAAGTGATGCCGATTGCGAGAAAACAACAACATAAAATGTATGCCCTCTAAAAAGTCAACTTTTGGTGTCTGTAAAAGGACTTAAAACTCGTATTTTATATACAATCTCTAAACCAAAGCCCAAACGGACTACCGAATTTCCCCTCATAGAAGACCTCCCAAACCTTTAAAATCTTTCATAGGAATCGAGATAATTGAGCTCACTCATGTAGAAAATAAAAGTAAACTCTGGCGAAAGTTGGCGAATCCTGAARTAGGAAGTCGGTGATGTAGTAGATGGTCGGACGCAGATTTGGCGAACTTTGGCGAACTCTACGCGAGTTTTGAATGCGTTGCGTGCAAACGACGCGTGTGTTCCGAATTTTGCATCACCTATTTTTTTTCAGTCAGTTTTTTTCACTATCAGAAATTTTTATTTTCCGACTTGTTTGTAGAGAAATAAGAGAACCTTGATTACCTACCTGCTTTGAGTGACACTTCAAGGTGGTTGTATTCGTTTGTTCACTTTTTTCTTACCTCCAAAACTTTGTTCTCCTTCTTCTTTTTTTTTTCAATCCAATTCCTTCATGCACCCTTCGCACATTGATTTATGCACTTCAGCAGTTCCCACAAAAAACCAGGTCACCAGAACTTCTGGCGCCTGTACCCTCTTCTTCGTAAAAATTCGAAATCCCATCATGATCTACCAGTGACAAATGACAATCGCAACACGTTAATTGGCCCAACAGAGAAAACACTCGAGAGACACAAGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCACTCATGTAGAAAATAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TCAAAGCAGGTAGGTAATCAAG</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>GCTCACTCATGTAGAAAATAAAAGTAAACTCTGGCGAAAGTTGGCGAATCCTGAAATAGGAAGTCGGTGATGTAGTAGATGGTCGGACGCAGATTTGGCGAACTTTGGCGAACTCTACGCGAGTTTTGAATGCGTTGCGTGCAAACGACGCGTGTGTTCCGAATTTTGCATCACCTATTTTTTTTCAGTCAGTTTTTTTCACTATCAGAAATTTTTATTTTCCGACTTGTTTGTAGAGAAATAAGAGAACCTTGATTACCTACCTGCTTTGA</canonical_amplicon>
		<polymorphic_amplicon>GCTCACTCATGTAGAAAATAAAAGTAAACTCTGGCGAAAGTTGGCGAATCCTGAARTAGGAAGTCGGTGATGTAGTAGATGGTCGGACGCAGATTTGGCGAACTTTGGCGAACTCTACGCGAGTTTTGAATGCGTTGCGTGCAAACGACGCGTGTGTTCCGAATTTTGCATCACCTATTTTTTTTCAGTCAGTTTTTTTCACTATCAGAAATTTTTATTTTCCGACTTGTTTGTAGAGAAATAAGAGAACCTTGATTACCTACCTGCTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32815</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>305411</contig_pos>
        <strand></strand>
        <context>gaagtcggtg[A/G]tgtagtagat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAGTAAACTCTGGCGAAAGTTGGCGAATCCTGAAATAGGAAGTCGGTG</left_flank>
        <right_flank>TGTAGTAGATGGTCGGACGCAGATTTGGCGAACTTTGGCGAACTCTACGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAATCTCTGTTGGCAAACTGTTGATGGAAATATTAGTTGATGTAATGGATTGTGTTTGAGTTTGAAGGAATTGTTAAGTTTCCAATAAAAACATGGCATTATAATTAGTATGTATTTTTTAAATATTTTTCTTCCTCAGTTTTGATTTATAATTGATAATTTATACTCAACTTGAAAATTAAAGTTTCAAAAGTTGTGGTACTTTAGATGATAACAATTTTTCCGTTGAAAAAAGTGATGCCGATTGCGAGAAAACAACAACATAAAATGTATGCCCTCTAAAAAGTCAACTTTTGGTGTCTGTAAAAGGACTTAAAACTCGTATTTTATATACAATCTCTAAACCAAAGCCCAAACGGACTACCGAATTTCCCCTCATAGAAGACCTCCCAAACCTTTAAAATCTTTCATAGGAATCGAGATAATTGAGCTCACTCATGTAGAAAATAAAAGTAAACTCTGGCGAAAGTTGGCGAATCCTGAAATAGGAAGTCGGTGATGTAGTAGATGGTCGGACGCAGATTTGGCGAACTTTGGCGAACTCTACGCGAGTTTTGAATGCGTTGCGTGCAAACGACGCGTGTGTTCCGAATTTTGCATCACCTATTTTTTTTCAGTCAGTTTTTTTCACTATCAGAAATTTTTATTTTCCGACTTGTTTGTAGAGAAATAAGAGAACCTTGATTACCTACCTGCTTTGAGTGACACTTCAAGGTGGTTGTATTCGTTTGTTCACTTTTTTCTTACCTCCAAAACTTTGTTCTCCTTCTTCTTTTTTTTTTCAATCCAATTCCTTCATGCACCCTTCGCACATTGATTTATGCACTTCAGCAGTTCCCACAAAAAACCAGGTCACCAGAACTTCTGGCGCCTGTACCCTCTTCTTCGTAAAAATTCGAAATCCCATCATGATCTACCAGTGACAAATGACAATCGCAACACGTTAATTGGCCCAACAGAGAAAACACTCGAGAGACACAAGATATAAAATAAAACGGC</canonical>
            <polymorphic>GTAATCTCTGTTGGCAAACTGTTGATGGAAATATTAGTTGATGTAATGGATTGTGTTTGAGTTTGAAGGAATTGTTAAGTTTCCAATAAAAACATGGCATTATAATTAGTATGTATTTTTTAAATATTTTTCTTCCTCAGTTTTGATTTATAATTGATAATTTATACTCAACTTGAAAATTAAAGTTTCAAAAGTTGTGGTACTTTAGATGATAACAATTTTTCCGTTGAAAAAAGTGATGCCGATTGCGAGAAAACAACAACATAAAATGTATGCCCTCTAAAAAGTCAACTTTTGGTGTCTGTAAAAGGACTTAAAACTCGTATTTTATATACAATCTCTAAACCAAAGCCCAAACGGACTACCGAATTTCCCCTCATAGAAGACCTCCCAAACCTTTAAAATCTTTCATAGGAATCGAGATAATTGAGCTCACTCATGTAGAAAATAAAAGTAAACTCTGGCGAAAGTTGGCGAATCCTGAAATAGGAAGTCGGTGRTGTAGTAGATGGTCGGACGCAGATTTGGCGAACTTTGGCGAACTCTACGCGAGTTTTGAATGCGTTGCGTGCAAACGACGCGTGTGTTCCGAATTTTGCATCACCTATTTTTTTTCAGTCAGTTTTTTTCACTATCAGAAATTTTTATTTTCCGACTTGTTTGTAGAGAAATAAGAGAACCTTGATTACCTACCTGCTTTGAGTGACACTTCAAGGTGGTTGTATTCGTTTGTTCACTTTTTTCTTACCTCCAAAACTTTGTTCTCCTTCTTCTTTTTTTTTTCAATCCAATTCCTTCATGCACCCTTCGCACATTGATTTATGCACTTCAGCAGTTCCCACAAAAAACCAGGTCACCAGAACTTCTGGCGCCTGTACCCTCTTCTTCGTAAAAATTCGAAATCCCATCATGATCTACCAGTGACAAATGACAATCGCAACACGTTAATTGGCCCAACAGAGAAAACACTCGAGAGACACAAGATATAAAATAAAACGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCACTCATGTAGAAAATAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TCAAAGCAGGTAGGTAATCAAG</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>GCTCACTCATGTAGAAAATAAAAGTAAACTCTGGCGAAAGTTGGCGAATCCTGAAATAGGAAGTCGGTGATGTAGTAGATGGTCGGACGCAGATTTGGCGAACTTTGGCGAACTCTACGCGAGTTTTGAATGCGTTGCGTGCAAACGACGCGTGTGTTCCGAATTTTGCATCACCTATTTTTTTTCAGTCAGTTTTTTTCACTATCAGAAATTTTTATTTTCCGACTTGTTTGTAGAGAAATAAGAGAACCTTGATTACCTACCTGCTTTGA</canonical_amplicon>
		<polymorphic_amplicon>GCTCACTCATGTAGAAAATAAAAGTAAACTCTGGCGAAAGTTGGCGAATCCTGAAATAGGAAGTCGGTGRTGTAGTAGATGGTCGGACGCAGATTTGGCGAACTTTGGCGAACTCTACGCGAGTTTTGAATGCGTTGCGTGCAAACGACGCGTGTGTTCCGAATTTTGCATCACCTATTTTTTTTCAGTCAGTTTTTTTCACTATCAGAAATTTTTATTTTCCGACTTGTTTGTAGAGAAATAAGAGAACCTTGATTACCTACCTGCTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32816</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>326641</contig_pos>
        <strand>+</strand>
        <context>GGCAAAGTTT[G/T]TTTCAAATTY</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAGTCGATACTACAAAGGATATCTGAAATACGAGCAACTGGCAAAGTTT</left_flank>
        <right_flank>TTTCAAATTTTCCTCGTTTCGAACGCAAAGTATAATTTCCAGAATTGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGTTTGTTTTAATATTCTGCACATTCTGGTTTGTGTTGGCAGTAATTCATGTCAGTATCTCAAGTATGTTTCCTTCAATTTTCACTGATTATATTCATATCTGTTTGCAGGAACATTCGTGTCTTCAACCAACACAATATTTTACACAGTAACTTCACAAGGAAAATTCGAAATTTTCGGTGAAGTTCAAGATGATGATCGTGTGGGGAATATCTTAGATTGTGGTCACTTCAATAGAACAGTTTTGGATTTTTTCAACATGGACTATATCGAAGCGAGTTGTTTGTTTCGAAGCTCTGTAATGCCATTTTTGGTTTTCATCTATATTTTTGTTACTGGTGTTTTGCTGGTCAATTTGCTGACTGCTCAGTTAACGTGAGAAATTAGAAGTTTCAATTTGCGAGACTTAGTAAATTTTCAGGAAAGAATACGAGAAGGAATCTGAAAAAAGTCGATACTACAAAGGATATCTGAAATACGAGCAACTGGCAAAGTTTTTTTCAAATTTTCCTCGTTTCGAACGCAAAGTATAATTTCCAGAATTGAATCAAAACTATATCTTCCACCTCCATTATCTCTGATATACATTTGCATTCGGTTGATTTTTTATTTCTTCGCTGGAATTTGTTTTTTGATCAATCTAGTGACTTCATGTTGTGGCTGGTCATTCTTATTCCCCAAATGTTCAAGATTTTTTTACATGACCATAATAAGTAAACTGGAAGGATATCCATGGGGAGCAGTTCGAGATTCGACAGATGATCATGGAACCGAAAAAGCTATTCAAGATTATTTGAAAAAGTCACCGGACGATATTTGGGAGAAGTTGAAGGAGGTAGTCAACATGTACGATAGAAAAATATTGGATGTTGAAAATTTGATAAACCTGAGAAAAGATATTGATAGTTTTCTGGATAAACAAGTGGACGAAGAGAGGGCAAGAAGTCATTCAGCCATAGGAACGGCCATAGGTTTCGTATCAACCACACAATCAAGAC</canonical>
            <polymorphic>AATGTTTGTTTTAATATTCTGCACATTCTGGTTTGTGTTGGCAGTAATTCATGTCAGTATCTCAAGTATGTTTCCTTCAATTTTCACTGATTATATTCATATCTGTTTGCAGGAACATTCGTGTCTTCAACCAACACAATATTTTACACAGTAACTTCACAAGGAAAATTCGAAATTTTCGGTGAAGTTCAAGATGATGATCGTGTGGGGAATATCTTAGATTGTGGTCACTTCAATAGAACAGTTTTGGATTTTTTCAACATGGACTATATCGAAGCGAGTTGTTTGTTTCGAAGCTCTGTAATGCCATTTTTGGTTTTCATCTATATTTTTGTTACTGGTGTTTTGCTGGTCAATTTGCTGACTGCTCAGTTAACGTGAGAAATTAGAAGTTTCAATTTGCGAGACTTAGTAAATTTTCAGGAAAGAATACGAGAAGGAATCTGAAAAAAGTCGATACTACAAAGGATATCTGAAATACGAGCAACTGGCAAAGTTTKTTTCAAATTTTCCTCGTTTCGAACGCAAAGTATAATTTCCAGAATTGAATCAAAACTATATCTTCCACCTCCATTATCTCTGATATACATTTGCATTCGGTTGATTTTTTATTTCTTCGCTGGAATTTGTTTTTTGATCAATCTAGTGACTTCATGTTGTGGCTGGTCATTCTTATTCCCCAAATGTTCAAGATTTTTTTACATGACCATAATAAGTAAACTGGAAGGATATCCATGGGGAGCAGTTCGAGATTCGACAGATGATCATGGAACCGAAAAAGCTATTCAAGATTATTTGAAAAAGTCACCGGACGATATTTGGGAGAAGTTGAAGGAGGTAGTCAACATGTACGATAGAAAAATATTGGATGTTGAAAATTTGATAAACCTGAGAAAAGATATTGATAGTTTTCTGGATAAACAAGTGGACGAAGAGAGGGCAAGAAGTCATTCAGCCATAGGAACGGCCATAGGTTTCGTATCAACCACACAATCAAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATTTTCAGGAAAGAATACGA</pcr_primer_p1>
		<pcr_primer_p2>CACAACATGAAGTCACTAGATTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAAATTTTCAGGAAAGAATACGAGAAGGAATCTGAAAAAAGTCGATACTACAAAGGATATCTGAAATACGAGCAACTGGCAAAGTTTTTTTCAAATTTTCCTCGTTTCGAACGCAAAGTATAATTTCCAGAATTGAATCAAAACTATATCTTCCACCTCCATTATCTCTGATATACATTTGCATTCGGTTGATTTTTTATTTCTTCGCTGGAATTTGTTTTTTGATCAATCTAGTGACTTCATGTTGTG</canonical_amplicon>
		<polymorphic_amplicon>TAAATTTTCAGGAAAGAATACGAGAAGGAATCTGAAAAAAGTCGATACTACAAAGGATATCTGAAATACGAGCAACTGGCAAAGTTTKTTTCAAATTTTCCTCGTTTCGAACGCAAAGTATAATTTCCAGAATTGAATCAAAACTATATCTTCCACCTCCATTATCTCTGATATACATTTGCATTCGGTTGATTTTTTATTTCTTCGCTGGAATTTGTTTTTTGATCAATCTAGTGACTTCATGTTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32817</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>327029</contig_pos>
        <strand>+</strand>
        <context>ATTTGATAAA[C/T]CTGAGAAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTAGTCAACATGTACGATAGAAAAATATTGGATGTTGAAAATTTGATAAA</left_flank>
        <right_flank>CTGAGAAAAGATATTGATAGTTTTCTGGATAAACAAGTGGACGAAGAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGTTTCAATTTGCGAGACTTAGTAAATTTTCAGGAAAGAATACGAGAAGGAATCTGAAAAAAGTCGATACTACAAAGGATATCTGAAATACGAGCAACTGGCAAAGTTTTTTTCAAATTTTCCTCGTTTCGAACGCAAAGTATAATTTCCAGAATTGAATCAAAACTATATCTTCCACCTCCATTATCTCTGATATACATTTGCATTCGGTTGATTTTTTATTTCTTCGCTGGAATTTGTTTTTTGATCAATCTAGTGACTTCATGTTGTGGCTGGTCATTCTTATTCCCCAAATGTTCAAGATTTTTTTACATGACCATAATAAGTAAACTGGAAGGATATCCATGGGGAGCAGTTCGAGATTCGACAGATGATCATGGAACCGAAAAAGCTATTCAAGATTATTTGAAAAAGTCACCGGACGATATTTGGGAGAAGTTGAAGGAGGTAGTCAACATGTACGATAGAAAAATATTGGATGTTGAAAATTTGATAAACCTGAGAAAAGATATTGATAGTTTTCTGGATAAACAAGTGGACGAAGAGAGGGCAAGAAGTCATTCAGCCATAGGAACGGCCATAGGTTTCGTATCAACCACACAATCAAGACAGATAAATCGAAACTCGACGATAAAATTCCTGGAGGATGATCCAAGCTCAGAAATGAATATTCCTACCTTTGCATAACCTTGAGTGATGAAATAGAAGCACACCCAAAATTCTGTTCATGTCTTCTTTTTTCTAGAGAGTGAGCAATAAGAAAAAACTGTTCCGTTTGTATTTCCAATATAGTATTTTTAAATTAATTGTCAGTTTTTTGAAAATATATGATCACGGAAATTTTTTTTCAATTCTAATGAATTCGTTCAGCTACAGTAATAAACTTATTTTCATTTGGTTGATTTTCGGTCATTTTGACCGTTTCCAGAAGTCTGAGGATCGGCTGCCAAGTGTCCGATCACTTTGAAAATTTTAGAGGGTGTTAAACAGACCTTGAT</canonical>
            <polymorphic>GAAGTTTCAATTTGCGAGACTTAGTAAATTTTCAGGAAAGAATACGAGAAGGAATCTGAAAAAAGTCGATACTACAAAGGATATCTGAAATACGAGCAACTGGCAAAGTTTTTTTCAAATTTTCCTCGTTTCGAACGCAAAGTATAATTTCCAGAATTGAATCAAAACTATATCTTCCACCTCCATTATCTCTGATATACATTTGCATTCGGTTGATTTTTTATTTCTTCGCTGGAATTTGTTTTTTGATCAATCTAGTGACTTCATGTTGTGGCTGGTCATTCTTATTCCCCAAATGTTCAAGATTTTTTTACATGACCATAATAAGTAAACTGGAAGGATATCCATGGGGAGCAGTTCGAGATTCGACAGATGATCATGGAACCGAAAAAGCTATTCAAGATTATTTGAAAAAGTCACCGGACGATATTTGGGAGAAGTTGAAGGAGGTAGTCAACATGTACGATAGAAAAATATTGGATGTTGAAAATTTGATAAAYCTGAGAAAAGATATTGATAGTTTTCTGGATAAACAAGTGGACGAAGAGAGGGCAAGAAGTCATTCAGCCATAGGAACGGCCATAGGTTTCGTATCAACCACACAATCAAGACAGATAAATCGAAACTCGACGATAAAATTCCTGGAGGATGATCCAAGCTCAGAAATGAATATTCCTACCTTTGCATAACCTTGAGTGATGAAATAGAAGCACACCCAAAATTCTGTTCATGTCTTCTTTTTTCTAGAGAGTGAGCAATAAGAAAAAACTGTTCCGTTTGTATTTCCAATATAGTATTTTTAAATTAATTGTCAGTTTTTTGAAAATATATGATCACGGAAATTTTTTTTCAATTCTAATGAATTCGTTCAGCTACAGTAATAAACTTATTTTCATTTGGTTGATTTTCGGTCATTTTGACCGTTTCCAGAAGTCTGAGGATCGGCTGCCAAGTGTCCGATCACTTTGAAAATTTTAGAGGGTGTTAAACAGACCTTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGTTGAAGGAGGTAGTCAAC</pcr_primer_p1>
		<pcr_primer_p2>AAGGTAGGAATATTCATTTCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGAAGTTGAAGGAGGTAGTCAACATGTACGATAGAAAAATATTGGATGTTGAAAATTTGATAAACCTGAGAAAAGATATTGATAGTTTTCTGGATAAACAAGTGGACGAAGAGAGGGCAAGAAGTCATTCAGCCATAGGAACGGCCATAGGTTTCGTATCAACCACACAATCAAGACAGATAAATCGAAACTCGACGATAAAATTCCTGGAGGATGATCCAAGCTCAGAAATGAATATTCCTACCTT</canonical_amplicon>
		<polymorphic_amplicon>AGAAGTTGAAGGAGGTAGTCAACATGTACGATAGAAAAATATTGGATGTTGAAAATTTGATAAAYCTGAGAAAAGATATTGATAGTTTTCTGGATAAACAAGTGGACGAAGAGAGGGCAAGAAGTCATTCAGCCATAGGAACGGCCATAGGTTTCGTATCAACCACACAATCAAGACAGATAAATCGAAACTCGACGATAAAATTCCTGGAGGATGATCCAAGCTCAGAAATGAATATTCCTACCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32818</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>345739</contig_pos>
        <strand></strand>
        <context>gtaatcctca[C/T]ttgctcatat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCAAATTTTCAACACTTGAAAATTAATCCGAAAACTACAGTAATCCTCA</left_flank>
        <right_flank>TTGCTCATATTAAAAAAATTAAATCCCAAAACTACAGCAATTCTCATTTC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGCTGGCCGTGACTCATTTCATGGTTGGATAGGCTGTCGTGGACCAATCAGTCTATTCTTTCAAAAATACGCTCAGCGCATCCTCATTGTCTTCAGATGTAAGAACGATTTCGAACACTACAGTAATCCTCAATTGTTCATTTTCAAAAAGTGAATCCCAAAACTACAGTAATCCTCATTTTTTCGAATTGTAAAAATGAAGCCTAAAACTACAGCAATCCTCTTTATTCTCAGTTTTTAAAAGTGAATTCGAAAACTACAGTAATCCTCATTTGTCAAGTTTATCGAATGAATCCTGAAACTACAGTAATTCTTCTTTTTCAAAATTAAGACGATTTCGAAAACTACAGTAATCCTCAATTTTTCATTTTCAAAAAGTGAATCTCTAACCTAAAGTAATCCTCATTATTCTCAATTTTCAAAAGTGAATTCGAAAACTACAGTAATCCTCAAATTTTCAACACTTGAAAATTAATCCGAAAACTACAGTAATCCTCACTTGCTCATATTAAAAAAATTAAATCCCAAAACTACAGCAATTCTCATTTCTTCCAATTCAAAAAATGATTTCTCAAACTACAGTGATTTTTTTAAAGTTTAAATAATGAATTTCAAAACTACAGTAATCCTCTCTGTCCAAATTTAAAACAATTTCAAAAACTACAATAATCCTTATTTCTTCGAATTTCAAAGATTAATCCCAAAACTACAATGATTCTTATTTTTCAATTTCAAATAATGAATACGAAAACTACAGTAACCCTCTTTTTTTCAATTTTTGAAAATGAATCCGAAAACTACAGTAAAAATTTTCTTCAGATTTCATAATTTTGTAAATCATTGGAATGTATAATCTTTGTTCGGATGTCCAATTTAAATCTTTCCCAGAAAACTCCCAAGAGATTACAGTAGGAAAAATCCTAAATTTTAAAGCAGGTTCATTTATGACGATTTTTCCATGCAATATTATTTCAAAATAGTTTTCCCTCCTCTTCCATT</canonical>
            <polymorphic>CGGCTGGCCGTGACTCATTTCATGGTTGGATAGGCTGTCGTGGACCAATCAGTCTATTCTTTCAAAAATACGCTCAGCGCATCCTCATTGTCTTCAGATGTAAGAACGATTTCGAACACTACAGTAATCCTCAATTGTTCATTTTCAAAAAGTGAATCCCAAAACTACAGTAATCCTCATTTTTTCGAATTGTAAAAATGAAGCCTAAAACTACAGCAATCCTCTTTATTCTCAGTTTTTAAAAGTGAATTCGAAAACTACAGTAATCCTCATTTGTCAAGTTTATCGAATGAATCCTGAAACTACAGTAATTCTTCTTTTTCAAAATTAAGACGATTTCGAAAACTACAGTAATCCTCAATTTTTCATTTTCAAAAAGTGAATCTCTAACCTAAAGTAATCCTCATTATTCTCAATTTTCAAAAGTGAATTCGAAAACTACAGTAATCCTCAAATTTTCAACACTTGAAAATTAATCCGAAAACTACAGTAATCCTCAYTTGCTCATATTAAAAAAATTAAATCCCAAAACTACAGCAATTCTCATTTCTTCCAATTCAAAAAATGATTTCTCAAACTACAGTGATTTTTTTAAAGTTTAAATAATGAATTTCAAAACTACAGTAATCCTCTCTGTCCAAATTTAAAACAATTTCAAAAACTACAATAATCCTTATTTCTTCGAATTTCAAAGATTAATCCCAAAACTACAATGATTCTTATTTTTCAATTTCAAATAATGAATACGAAAACTACAGTAACCCTCTTTTTTTCAATTTTTGAAAATGAATCCGAAAACTACAGTAAAAATTTTCTTCAGATTTCATAATTTTGTAAATCATTGGAATGTATAATCTTTGTTCGGATGTCCAATTTAAATCTTTCCCAGAAAACTCCCAAGAGATTACAGTAGGAAAAATCCTAAATTTTAAAGCAGGTTCATTTATGACGATTTTTCCATGCAATATTATTTCAAAATAGTTTTCCCTCCTCTTCCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>415 134 93 86 76 47 36 36 35 30 12</canonical_bands>
                <polymorphic_bands>415 134 121 93 76 47 36 36 30 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAGAAAATGCAATGCTGTG</pcr_primer_p1>
		<pcr_primer_p2>TTATACATTCCAATGATTTACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>898</pcr_amplicon_size>
		<canonical_amplicon>ACTTGCTCATATTAAAAAAATTAAATCCCAAAACTACAGCAATTCTCATTTCTTCCAATTCAAAAAATGATTTCTCAAACTACAGTGATTTTTTTAAAGTTTAAATAATGAATTTCAAAACTACAGTAATCCTCTCTGTCCAAATTTAAAACAATTTCAAAAACTACAATAATCCTTATTTCTTCGAATTTCAAAGATTAATCCCAAAACTACAATGATTCTTATTTTTCAATTTCAAATAATGAATACGAAAACTACAGTAACCCTCTTTTTTTCAATTTTTGAAAATGAATCCGAAAACTACAGTAAAAATTTTCTTCAGATTTCATAATTTTGTAAATCATTGGAATGTATAA</canonical_amplicon>
		<polymorphic_amplicon>AYTTGCTCATATTAAAAAAATTAAATCCCAAAACTACAGCAATTCTCATTTCTTCCAATTCAAAAAATGATTTCTCAAACTACAGTGATTTTTTTAAAGTTTAAATAATGAATTTCAAAACTACAGTAATCCTCTCTGTCCAAATTTAAAACAATTTCAAAAACTACAATAATCCTTATTTCTTCGAATTTCAAAGATTAATCCCAAAACTACAATGATTCTTATTTTTCAATTTCAAATAATGAATACGAAAACTACAGTAACCCTCTTTTTTTCAATTTTTGAAAATGAATCCGAAAACTACAGTAAAAATTTTCTTCAGATTTCATAATTTTGTAAATCATTGGAATGTATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32819</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>345787</contig_pos>
        <strand></strand>
        <context>caattctcat[T/A]tcttccaatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CACTTGCTCATATTAAAAAAATTAAATCCCAAAACTACAGCAATTCTCAT</left_flank>
        <right_flank>TCTTCCAATTCAAAAAATGATTTCTCAAACTACAGTGATTTTTTTAAAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGTCTATTCTTTCAAAAATACGCTCAGCGCATCCTCATTGTCTTCAGATGTAAGAACGATTTCGAACACTACAGTAATCCTCAATTGTTCATTTTCAAAAAGTGAATCCCAAAACTACAGTAATCCTCATTTTTTCGAATTGTAAAAATGAAGCCTAAAACTACAGCAATCCTCTTTATTCTCAGTTTTTAAAAGTGAATTCGAAAACTACAGTAATCCTCATTTGTCAAGTTTATCGAATGAATCCTGAAACTACAGTAATTCTTCTTTTTCAAAATTAAGACGATTTCGAAAACTACAGTAATCCTCAATTTTTCATTTTCAAAAAGTGAATCTCTAACCTAAAGTAATCCTCATTATTCTCAATTTTCAAAAGTGAATTCGAAAACTACAGTAATCCTCAAATTTTCAACACTTGAAAATTAATCCGAAAACTACAGTAATCCTCACTTGCTCATATTAAAAAAATTAAATCCCAAAACTACAGCAATTCTCATTTCTTCCAATTCAAAAAATGATTTCTCAAACTACAGTGATTTTTTTAAAGTTTAAATAATGAATTTCAAAACTACAGTAATCCTCTCTGTCCAAATTTAAAACAATTTCAAAAACTACAATAATCCTTATTTCTTCGAATTTCAAAGATTAATCCCAAAACTACAATGATTCTTATTTTTCAATTTCAAATAATGAATACGAAAACTACAGTAACCCTCTTTTTTTCAATTTTTGAAAATGAATCCGAAAACTACAGTAAAAATTTTCTTCAGATTTCATAATTTTGTAAATCATTGGAATGTATAATCTTTGTTCGGATGTCCAATTTAAATCTTTCCCAGAAAACTCCCAAGAGATTACAGTAGGAAAAATCCTAAATTTTAAAGCAGGTTCATTTATGACGATTTTTCCATGCAATATTATTTCAAAATAGTTTTCCCTCCTCTTCCATTACTCATAGATTTCCATTTTTCTAGTCATGAAACTGTCTTTTCTAGAAA</canonical>
            <polymorphic>TCAGTCTATTCTTTCAAAAATACGCTCAGCGCATCCTCATTGTCTTCAGATGTAAGAACGATTTCGAACACTACAGTAATCCTCAATTGTTCATTTTCAAAAAGTGAATCCCAAAACTACAGTAATCCTCATTTTTTCGAATTGTAAAAATGAAGCCTAAAACTACAGCAATCCTCTTTATTCTCAGTTTTTAAAAGTGAATTCGAAAACTACAGTAATCCTCATTTGTCAAGTTTATCGAATGAATCCTGAAACTACAGTAATTCTTCTTTTTCAAAATTAAGACGATTTCGAAAACTACAGTAATCCTCAATTTTTCATTTTCAAAAAGTGAATCTCTAACCTAAAGTAATCCTCATTATTCTCAATTTTCAAAAGTGAATTCGAAAACTACAGTAATCCTCAAATTTTCAACACTTGAAAATTAATCCGAAAACTACAGTAATCCTCACTTGCTCATATTAAAAAAATTAAATCCCAAAACTACAGCAATTCTCATWTCTTCCAATTCAAAAAATGATTTCTCAAACTACAGTGATTTTTTTAAAGTTTAAATAATGAATTTCAAAACTACAGTAATCCTCTCTGTCCAAATTTAAAACAATTTCAAAAACTACAATAATCCTTATTTCTTCGAATTTCAAAGATTAATCCCAAAACTACAATGATTCTTATTTTTCAATTTCAAATAATGAATACGAAAACTACAGTAACCCTCTTTTTTTCAATTTTTGAAAATGAATCCGAAAACTACAGTAAAAATTTTCTTCAGATTTCATAATTTTGTAAATCATTGGAATGTATAATCTTTGTTCGGATGTCCAATTTAAATCTTTCCCAGAAAACTCCCAAGAGATTACAGTAGGAAAAATCCTAAATTTTAAAGCAGGTTCATTTATGACGATTTTTCCATGCAATATTATTTCAAAATAGTTTTCCCTCCTCTTCCATTACTCATAGATTTCCATTTTTCTAGTCATGAAACTGTCTTTTCTAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAGAAAATGCAATGCTGTG</pcr_primer_p1>
		<pcr_primer_p2>TTATACATTCCAATGATTTACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>898</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTCCAATTCAAAAAATGATTTCTCAAACTACAGTGATTTTTTTAAAGTTTAAATAATGAATTTCAAAACTACAGTAATCCTCTCTGTCCAAATTTAAAACAATTTCAAAAACTACAATAATCCTTATTTCTTCGAATTTCAAAGATTAATCCCAAAACTACAATGATTCTTATTTTTCAATTTCAAATAATGAATACGAAAACTACAGTAACCCTCTTTTTTTCAATTTTTGAAAATGAATCCGAAAACTACAGTAAAAATTTTCTTCAGATTTCATAATTTTGTAAATCATTGGAATGTATAA</canonical_amplicon>
		<polymorphic_amplicon>TWTCTTCCAATTCAAAAAATGATTTCTCAAACTACAGTGATTTTTTTAAAGTTTAAATAATGAATTTCAAAACTACAGTAATCCTCTCTGTCCAAATTTAAAACAATTTCAAAAACTACAATAATCCTTATTTCTTCGAATTTCAAAGATTAATCCCAAAACTACAATGATTCTTATTTTTCAATTTCAAATAATGAATACGAAAACTACAGTAACCCTCTTTTTTTCAATTTTTGAAAATGAATCCGAAAACTACAGTAAAAATTTTCTTCAGATTTCATAATTTTGTAAATCATTGGAATGTATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32820</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>345906</contig_pos>
        <strand></strand>
        <context>aaaaactaca[A/G]taatccttat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACTACAGTAATCCTCTCTGTCCAAATTTAAAACAATTTCAAAAACTACA</left_flank>
        <right_flank>TAATCCTTATTTCTTCGAATTTCAAAGATTAATCCCAAAACTACAATGAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTAATCCTCATTTTTTCGAATTGTAAAAATGAAGCCTAAAACTACAGCAATCCTCTTTATTCTCAGTTTTTAAAAGTGAATTCGAAAACTACAGTAATCCTCATTTGTCAAGTTTATCGAATGAATCCTGAAACTACAGTAATTCTTCTTTTTCAAAATTAAGACGATTTCGAAAACTACAGTAATCCTCAATTTTTCATTTTCAAAAAGTGAATCTCTAACCTAAAGTAATCCTCATTATTCTCAATTTTCAAAAGTGAATTCGAAAACTACAGTAATCCTCAAATTTTCAACACTTGAAAATTAATCCGAAAACTACAGTAATCCTCACTTGCTCATATTAAAAAAATTAAATCCCAAAACTACAGCAATTCTCATTTCTTCCAATTCAAAAAATGATTTCTCAAACTACAGTGATTTTTTTAAAGTTTAAATAATGAATTTCAAAACTACAGTAATCCTCTCTGTCCAAATTTAAAACAATTTCAAAAACTACAATAATCCTTATTTCTTCGAATTTCAAAGATTAATCCCAAAACTACAATGATTCTTATTTTTCAATTTCAAATAATGAATACGAAAACTACAGTAACCCTCTTTTTTTCAATTTTTGAAAATGAATCCGAAAACTACAGTAAAAATTTTCTTCAGATTTCATAATTTTGTAAATCATTGGAATGTATAATCTTTGTTCGGATGTCCAATTTAAATCTTTCCCAGAAAACTCCCAAGAGATTACAGTAGGAAAAATCCTAAATTTTAAAGCAGGTTCATTTATGACGATTTTTCCATGCAATATTATTTCAAAATAGTTTTCCCTCCTCTTCCATTACTCATAGATTTCCATTTTTCTAGTCATGAAACTGTCTTTTCTAGAAACCAATAACCCATTTTCCTCCCTTATCAAAATGTTCGTTTCTTTCCCCATCAGACAGCTGTCTTTTTACCTCTTTCAGGTGAGCAGGTGTCACTCTTCCCCGTTGTTCCGCGCGTTCCTT</canonical>
            <polymorphic>CAGTAATCCTCATTTTTTCGAATTGTAAAAATGAAGCCTAAAACTACAGCAATCCTCTTTATTCTCAGTTTTTAAAAGTGAATTCGAAAACTACAGTAATCCTCATTTGTCAAGTTTATCGAATGAATCCTGAAACTACAGTAATTCTTCTTTTTCAAAATTAAGACGATTTCGAAAACTACAGTAATCCTCAATTTTTCATTTTCAAAAAGTGAATCTCTAACCTAAAGTAATCCTCATTATTCTCAATTTTCAAAAGTGAATTCGAAAACTACAGTAATCCTCAAATTTTCAACACTTGAAAATTAATCCGAAAACTACAGTAATCCTCACTTGCTCATATTAAAAAAATTAAATCCCAAAACTACAGCAATTCTCATTTCTTCCAATTCAAAAAATGATTTCTCAAACTACAGTGATTTTTTTAAAGTTTAAATAATGAATTTCAAAACTACAGTAATCCTCTCTGTCCAAATTTAAAACAATTTCAAAAACTACARTAATCCTTATTTCTTCGAATTTCAAAGATTAATCCCAAAACTACAATGATTCTTATTTTTCAATTTCAAATAATGAATACGAAAACTACAGTAACCCTCTTTTTTTCAATTTTTGAAAATGAATCCGAAAACTACAGTAAAAATTTTCTTCAGATTTCATAATTTTGTAAATCATTGGAATGTATAATCTTTGTTCGGATGTCCAATTTAAATCTTTCCCAGAAAACTCCCAAGAGATTACAGTAGGAAAAATCCTAAATTTTAAAGCAGGTTCATTTATGACGATTTTTCCATGCAATATTATTTCAAAATAGTTTTCCCTCCTCTTCCATTACTCATAGATTTCCATTTTTCTAGTCATGAAACTGTCTTTTCTAGAAACCAATAACCCATTTTCCTCCCTTATCAAAATGTTCGTTTCTTTCCCCATCAGACAGCTGTCTTTTTACCTCTTTCAGGTGAGCAGGTGTCACTCTTCCCCGTTGTTCCGCGCGTTCCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAGAAAATGCAATGCTGTG</pcr_primer_p1>
		<pcr_primer_p2>TTATACATTCCAATGATTTACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>898</pcr_amplicon_size>
		<canonical_amplicon>AATAATCCTTATTTCTTCGAATTTCAAAGATTAATCCCAAAACTACAATGATTCTTATTTTTCAATTTCAAATAATGAATACGAAAACTACAGTAACCCTCTTTTTTTCAATTTTTGAAAATGAATCCGAAAACTACAGTAAAAATTTTCTTCAGATTTCATAATTTTGTAAATCATTGGAATGTATAA</canonical_amplicon>
		<polymorphic_amplicon>ARTAATCCTTATTTCTTCGAATTTCAAAGATTAATCCCAAAACTACAATGATTCTTATTTTTCAATTTCAAATAATGAATACGAAAACTACAGTAACCCTCTTTTTTTCAATTTTTGAAAATGAATCCGAAAACTACAGTAAAAATTTTCTTCAGATTTCATAATTTTGTAAATCATTGGAATGTATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32821</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>347054</contig_pos>
        <strand></strand>
        <context>gacccatttt[A/G]ggcagttttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGTTCGCTTTAAACAGTACTTCGGAATTATTTTATTTTGACCCATTTT</left_flank>
        <right_flank>GGCAGTTTTTTTACTTTATGCGGAAATTCAGATGATTATTCATAAGAATC</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGAGACACCCCCACACATAACATGTTCCTCCAATCAGCTCGCTCATAATTCAATTTTCCATCGAAAACTACTGCTCACAGATTTAGATTTCTTGATTCGGACCTGACCATTTTGTATGTTTTTTGAGCTGATGATGCCATCGGAATTTCGGAATTTTTCCGTTTTCTAATAAAACCAGACCGAGAGCTCTTGTCTGTTTTCATTTCTGTGCTACCAGCAGCACGAGAAGAAGCCTCTTCAAAAACCAATTTCAGTCAGTTGATAGAGGAGAAATGAAAAAATAGAATGAAATGGGTTGAAATTATGATTCGCTTTTGTTTTTCTTTCTTTTCCGCTCAAACTTTCATATTATTCTTGGCCGGCGCCGATGAAAATTGTGGCCGGAAATTCATTTAAAGGCGCATAGCAGGTCCTGAAGCGAAAACGGCAACGGTTTTTACAAATAAATTCGTTCGCTTTAAACAGTACTTCGGAATTATTTTATTTTGACCCATTTTAGGCAGTTTTTTTACTTTATGCGGAAATTCAGATGATTATTCATAAGAATCTGAAGAATTCAAACGGAAACAAGCACAAATCTGAGAAAAAATCCTATATATGCGCCTTTAGATAAAAGTTCGGTATAAAAATAAAAGTTTCATCGGCGCCGGACAAGAATAATATTGGCTGCTGCTATCTCTTTTTTTCCCGTTTTTCGCAACTTTTCGTCTAGTGATTCCCCAATTGTTGCCTCCAGAAAGCAGCGTGGCGCAGTGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGGTGGATCGAAACCACTCGCTGCTATATTTTTTTTTGCTGTTGAGCTAAATAACTTATACCACCCACACTCTCATTCAGAGTCAGTGACAAAAAAAGATATGAAGCAAGAGCCTAGAAAAACTAGACAAACAAAAATGGCGGGGAAACTTTATGAGACATATAAACAAGATCGCATCCCAGAAACACTTCTTCTTCTCGATTACATATTCGCA</canonical>
            <polymorphic>TCAGAGACACCCCCACACATAACATGTTCCTCCAATCAGCTCGCTCATAATTCAATTTTCCATCGAAAACTACTGCTCACAGATTTAGATTTCTTGATTCGGACCTGACCATTTTGTATGTTTTTTGAGCTGATGATGCCATCGGAATTTCGGAATTTTTCCGTTTTCTAATAAAACCAGACCGAGAGCTCTTGTCTGTTTTCATTTCTGTGCTACCAGCAGCACGAGAAGAAGCCTCTTCAAAAACCAATTTCAGTCAGTTGATAGAGGAGAAATGAAAAAATAGAATGAAATGGGTTGAAATTATGATTCGCTTTTGTTTTTCTTTCTTTTCCGCTCAAACTTTCATATTATTCTTGGCCGGCGCCGATGAAAATTGTGGCCGGAAATTCATTTAAAGGCGCATAGCAGGTCCTGAAGCGAAAACGGCAACGGTTTTTACAAATAAATTCGTTCGCTTTAAACAGTACTTCGGAATTATTTTATTTTGACCCATTTTRGGCAGTTTTTTTACTTTATGCGGAAATTCAGATGATTATTCATAAGAATCTGAAGAATTCAAACGGAAACAAGCACAAATCTGAGAAAAAATCCTATATATGCGCCTTTAGATAAAAGTTCGGTATAAAAATAAAAGTTTCATCGGCGCCGGACAAGAATAATATTGGCTGCTGCTATCTCTTTTTTTCCCGTTTTTCGCAACTTTTCGTCTAGTGATTCCCCAATTGTTGCCTCCAGAAAGCAGCGTGGCGCAGTGGAAGCGTGCTGGGCCCATAACCCAGAGGTCGGTGGATCGAAACCACTCGCTGCTATATTTTTTTTTGCTGTTGAGCTAAATAACTTATACCACCCACACTCTCATTCAGAGTCAGTGACAAAAAAAGATATGAAGCAAGAGCCTAGAAAAACTAGACAAACAAAAATGGCGGGGAAACTTTATGAGACATATAAACAAGATCGCATCCCAGAAACACTTCTTCTTCTCGATTACATATTCGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCGCTCAAACTTTCATA</pcr_primer_p1>
		<pcr_primer_p2>AGAGATAGCAGCAGCCAATA</pcr_primer_p2>
		<pcr_amplicon_size>352</pcr_amplicon_size>
		<canonical_amplicon>TTTCCGCTCAAACTTTCATATTATTCTTGGCCGGCGCCGATGAAAATTGTGGCCGGAAATTCATTTAAAGGCGCATAGCAGGTCCTGAAGCGAAAACGGCAACGGTTTTTACAAATAAATTCGTTCGCTTTAAACAGTACTTCGGAATTATTTTATTTTGACCCATTTTAGGCAGTTTTTTTACTTTATGCGGAAATTCAGATGATTATTCATAAGAATCTGAAGAATTCAAACGGAAACAAGCACAAATCTGAGAAAAAATCCTATATATGCGCCTTTAGATAAAAGTTCGGTATAAAAATAAAAGTTTCATCGGCGCCGGACAAGAATAATATTGGCTGCTGCTATCTCT</canonical_amplicon>
		<polymorphic_amplicon>TTTCCGCTCAAACTTTCATATTATTCTTGGCCGGCGCCGATGAAAATTGTGGCCGGAAATTCATTTAAAGGCGCATAGCAGGTCCTGAAGCGAAAACGGCAACGGTTTTTACAAATAAATTCGTTCGCTTTAAACAGTACTTCGGAATTATTTTATTTTGACCCATTTTRGGCAGTTTTTTTACTTTATGCGGAAATTCAGATGATTATTCATAAGAATCTGAAGAATTCAAACGGAAACAAGCACAAATCTGAGAAAAAATCCTATATATGCGCCTTTAGATAAAAGTTCGGTATAAAAATAAAAGTTTCATCGGCGCCGGACAAGAATAATATTGGCTGCTGCTATCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32822</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>348468</contig_pos>
        <strand></strand>
        <context>AAGGAGAATT[T/C]CATCACTATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTATCGGGAATTTTCTGATAGCTGATAGCAGCCAAATGAAAAGGAGAATT</left_flank>
        <right_flank>CATCACTATTCCCTTATTTCTCTCGATTTGGTATCCGATTTCATTCTTTG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGTCGCTCCTTTCCTACCCGTTTTTTTCTCCCATTTATTATTATTCTCTGTATATTATTCTTGCGCCTTCCGGATTACTTTCGCTCTTCCCATCGTCGTCGTCCCTGACTCTTCGTCACCTTTTCCTTCCGTTTTTCCAAACTCTTCATTTTCTATTTTCTTCTTCTTCTTCTTTTCCATTTTCCACCACTTCCAACAATTATCGTTTTTCCGGCATTTTTTGTTCTCTTCCTCCTGACTCCTCCCCCATCATCATCATCAATTATTCACTGAAAAGAATGCCGATGAGGATTCCTGCACTCGGCTGCTCCTTTTTTGCTTCTACTTTTTGCTCTATTCGAATTTTTTGGGCTGCAAAGGAGTACATCTGTGATTCTTGTAATCTTTTCTCTCTTCCCAAATCTTCTTTTGACGTGAGCATGAGCTTACTCGATTGCTCAGATATTTATTATCGGGAATTTTCTGATAGCTGATAGCAGCCAAATGAAAAGGAGAATTTCATCACTATTCCCTTATTTCTCTCGATTTGGTATCCGATTTCATTCTTTGATGGTGGTCCCATCTCCGCCGCTTTTCAAGTGATTCGCACCTAGAATTTTAGATTTTTTGGTTGTTTGAATTTTGAAGAATCTCCACTTTTTCTGAAAGTCATTAGACTCGATGCTTGCTGATTAGACCTATACATAATTAAACCCCTCTATTCTTTAGTTTTTTATTCAAATCTCTCCTGAAAAAACAAACTGATTTGCTTCATCCCACCTGAATCTGCCAAAAATCTCCTGGTCATCTCACCCCCTGGACCACCCTCAAAGTGTAATCTCTCCACAATTTTTGACAGCTCCTCACTCATTTTCTTCGCGGTGTCAAAAGTTTTTTGTTATGAGCTACCATTTCCTTCTCCTGTTCGCTATTATTTTCACATTTTCATATTTCACATCGGCAAAAAAATGCAAAAAAGTATGTTTTTTAGTCTAGATTCTCCTTGTTTCGTTTTTTGTT</canonical>
            <polymorphic>GCGTCGCTCCTTTCCTACCCGTTTTTTTCTCCCATTTATTATTATTCTCTGTATATTATTCTTGCGCCTTCCGGATTACTTTCGCTCTTCCCATCGTCGTCGTCCCTGACTCTTCGTCACCTTTTCCTTCCGTTTTTCCAAACTCTTCATTTTCTATTTTCTTCTTCTTCTTCTTTTCCATTTTCCACCACTTCCAACAATTATCGTTTTTCCGGCATTTTTTGTTCTCTTCCTCCTGACTCCTCCCCCATCATCATCATCAATTATTCACTGAAAAGAATGCCGATGAGGATTCCTGCACTCGGCTGCTCCTTTTTTGCTTCTACTTTTTGCTCTATTCGAATTTTTTGGGCTGCAAAGGAGTACATCTGTGATTCTTGTAATCTTTTCTCTCTTCCCAAATCTTCTTTTGACGTGAGCATGAGCTTACTCGATTGCTCAGATATTTATTATCGGGAATTTTCTGATAGCTGATAGCAGCCAAATGAAAAGGAGAATTYCATCACTATTCCCTTATTTCTCTCGATTTGGTATCCGATTTCATTCTTTGATGGTGGTCCCATCTCCGCCGCTTTTCAAGTGATTCGCACCTAGAATTTTAGATTTTTTGGTTGTTTGAATTTTGAAGAATCTCCACTTTTTCTGAAAGTCATTAGACTCGATGCTTGCTGATTAGACCTATACATAATTAAACCCCTCTATTCTTTAGTTTTTTATTCAAATCTCTCCTGAAAAAACAAACTGATTTGCTTCATCCCACCTGAATCTGCCAAAAATCTCCTGGTCATCTCACCCCCTGGACCACCCTCAAAGTGTAATCTCTCCACAATTTTTGACAGCTCCTCACTCATTTTCTTCGCGGTGTCAAAAGTTTTTTGTTATGAGCTACCATTTCCTTCTCCTGTTCGCTATTATTTTCACATTTTCATATTTCACATCGGCAAAAAAATGCAAAAAAGTATGTTTTTTAGTCTAGATTCTCCTTGTTTCGTTTTTTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>382 341 116 99 38 24</canonical_bands>
                <polymorphic_bands>382 341 137 116 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGAGTACATCTGTGATTCTTGT</pcr_primer_p1>
		<pcr_primer_p2>ATCTAAAATTCTAGGTGCGAATC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGGAGTACATCTGTGATTCTTGTAATCTTTTCTCTCTTCCCAAATCTTCTTTTGACGTGAGCATGAGCTTACTCGATTGCTCAGATATTTATTATCGGGAATTTTCTGATAGCTGATAGCAGCCAAATGAAAAGGAGAATTTCATCACTATTCCCTTATTTCTCTCGATTTGGTATCCGATTTCATTCTTTGATGGTGGTCCCATCTCCGCCGCTTTTCAAGTGATTCGCACCTAGAATTTTAGAT</canonical_amplicon>
		<polymorphic_amplicon>AGGAGTACATCTGTGATTCTTGTAATCTTTTCTCTCTTCCCAAATCTTCTTTTGACGTGAGCATGAGCTTACTCGATTGCTCAGATATTTATTATCGGGAATTTTCTGATAGCTGATAGCAGCCAAATGAAAAGGAGAATTYCATCACTATTCCCTTATTTCTCTCGATTTGGTATCCGATTTCATTCTTTGATGGTGGTCCCATCTCCGCCGCTTTTCAAGTGATTCGCACCTAGAATTTTAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32823</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>354106</contig_pos>
        <strand>+</strand>
        <context>AATTYGACCT[A/T]CTTTGTGTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACACGGGATTAACGGACAGCCCTCCAAAACGACTCGTTCCAATTCGACCT</left_flank>
        <right_flank>CTTTGTGTCACATCTCATCAAATATGTTTCATGTCAAAAATGAAGTGGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCGGAATCTTCAAATGTTTGAATTCCAAATTGTTTTCTTTTTCCTAAAGTTCCCACTCTCTTATGAACCACTTCAAACTTTACCGAGTATCCTCTTTTTACCGAGTATCCAAATATTTTCAAGCTCTTTCTATTTTCAGATGGAATAAAAAAGAATCTCCAGGAAGAGAAAGATGAAATTCCGATCGCTGGCCTTGTCGCTCCGTGTGTTCGGCGTCAAGAATCGTCTGTTGCAAGCAAATCAAAATGAGGTGGGTCCCTCCTATTTTTCACTCGATATTTGACACACAACCTTTTTTCCTTTCGCGCAGCATTTTTCTTGCTCTCTACGCTCAAATGAATAGAGACACATTTGCATTTTTTATTTGCTACCTTCCCATCGAAAAAAATTTTGTCTTCTTTTTCTTCGTTTGGTTCCGTTTTTCTGTCCATTTGTCACTAGACTATACACGGGATTAACGGACAGCCCTCCAAAACGACTCGTTCCAATTCGACCTACTTTGTGTCACATCTCATCAAATATGTTTCATGTCAAAAATGAAGTGGTAGAAGTGTTACTTTTTACTACTCAGTTACTTTTTGGAATTTAGTACGAGAGAGAATGCGATTATTGTTTGGAGAAATACCGTGCATACGGTAGAAGGACCCCTTAACTTCTAACTTTGAACCAATTTATCTACGTTCCTGTGAAAGATTCAAAAAAGTTATCAACTGATAAATTGTTTATTAAAATGTCAAAAACATTTTATTAATGTGATATATTCTTGACATCTTTTATTGTTGCCAAGAAAAATTAACTCAAGTTTGATAGTGTGGGTGCCCTTCTATTACAGGGTTCTAAAAGTTGTATTTTGAAAAAAAATTCCCGTTCGAAAATTTCAGAATTGTGAGTTTCAAAATTTTTGACATATTGGTTGTATTTAATTCCACAGATAGCCGAAATTCCAAATGCGAATTTTTGGAAATTTTCTGGAAATGTTCAAAATCCATGTTTCTTG</canonical>
            <polymorphic>TTTCCGGAATCTTCAAATGTTTGAATTCCAAATTGTTTTCTTTTTCCTAAAGTTCCCACTCTCTTATGAACCACTTCAAACTTTACCGAGTATCCTCTTTTTACCGAGTATCCAAATATTTTCAAGCTCTTTCTATTTTCAGATGGAATAAAAAAGAATCTCCAGGAAGAGAAAGATGAAATTCCGATCGCTGGCCTTGTCGCTCCGTGTGTTCGGCGTCAAGAATCGTCTGTTGCAAGCAAATCAAAATGAGGTGGGTCCCTCCTATTTTTCACTCGATATTTGACACACAACCTTTTTTCCTTTCGCGCAGCATTTTTCTTGCTCTCTACGCTCAAATGAATAGAGACACATTTGCATTTTTTATTTGCTACCTTCCCATCGAAAAAAATTTTGTCTTCTTTTTCTTCGTTTGGTTCCGTTTTTCTGTCCATTTGTCACTAGACTATACACGGGATTAACGGACAGCCCTCCAAAACGACTCGTTCCAATTCGACCTWCTTTGTGTCACATCTCATCAAATATGTTTCATGTCAAAAATGAAGTGGTAGAAGTGTTACTTTTTACTACTCAGTTACTTTTTGGAATTTAGTACGAGAGAGAATGCGATTATTGTTTGGAGAAATACCGTGCATACGGTAGAAGGACCCCTTAACTTCTAACTTTGAACCAATTTATCTACGTTCCTGTGAAAGATTCAAAAAAGTTATCAACTGATAAATTGTTTATTAAAATGTCAAAAACATTTTATTAATGTGATATATTCTTGACATCTTTTATTGTTGCCAAGAAAAATTAACTCAAGTTTGATAGTGTGGGTGCCCTTCTATTACAGGGTTCTAAAAGTTGTATTTTGAAAAAAAATTCCCGTTCGAAAATTTCAGAATTGTGAGTTTCAAAATTTTTGACATATTGGTTGTATTTAATTCCACAGATAGCCGAAATTCCAAATGCGAATTTTTGGAAATTTTCTGGAAATGTTCAAAATCCATGTTTCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCATTTTTCTTGCTCTCTAC</pcr_primer_p1>
		<pcr_primer_p2>ACACTTCTACCACTTCATTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAGCATTTTTCTTGCTCTCTACGCTCAAATGAATAGAGACACATTTGCATTTTTTATTTGCTACCTTCCCATCGAAAAAAATTTTGTCTTCTTTTTCTTCGTTTGGTTCCGTTTTTCTGTCCATTTGTCACTAGACTATACACGGGATTAACGGACAGCCCTCCAAAACGACTCGTTCCAATTCGACCTACTTTGTGTCACATCTCATCAAATATGTTTCATGTCAAAAATGAAGTGGTAGAAGTGT</canonical_amplicon>
		<polymorphic_amplicon>CAGCATTTTTCTTGCTCTCTACGCTCAAATGAATAGAGACACATTTGCATTTTTTATTTGCTACCTTCCCATCGAAAAAAATTTTGTCTTCTTTTTCTTCGTTTGGTTCCGTTTTTCTGTCCATTTGTCACTAGACTATACACGGGATTAACGGACAGCCCTCCAAAACGACTCGTTCCAATTCGACCTWCTTTGTGTCACATCTCATCAAATATGTTTCATGTCAAAAATGAAGTGGTAGAAGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32824</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>354136</contig_pos>
        <strand>+</strand>
        <context>AAATATGTTT[A/C]ATGTCAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GACTCGTTCCAATTCGACCTACTTTGTGTCACATCTCATCAAATATGTTT</left_flank>
        <right_flank>ATGTCAAAAATGAAGTGGTAGAAGTGTTACTTTTTACTACTCAGTTACTT</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGTTTTCTTTTTCCTAAAGTTCCCACTCTCTTATGAACCACTTCAAACTTTACCGAGTATCCTCTTTTTACCGAGTATCCAAATATTTTCAAGCTCTTTCTATTTTCAGATGGAATAAAAAAGAATCTCCAGGAAGAGAAAGATGAAATTCCGATCGCTGGCCTTGTCGCTCCGTGTGTTCGGCGTCAAGAATCGTCTGTTGCAAGCAAATCAAAATGAGGTGGGTCCCTCCTATTTTTCACTCGATATTTGACACACAACCTTTTTTCCTTTCGCGCAGCATTTTTCTTGCTCTCTACGCTCAAATGAATAGAGACACATTTGCATTTTTTATTTGCTACCTTCCCATCGAAAAAAATTTTGTCTTCTTTTTCTTCGTTTGGTTCCGTTTTTCTGTCCATTTGTCACTAGACTATACACGGGATTAACGGACAGCCCTCCAAAACGACTCGTTCCAATTCGACCTACTTTGTGTCACATCTCATCAAATATGTTTCATGTCAAAAATGAAGTGGTAGAAGTGTTACTTTTTACTACTCAGTTACTTTTTGGAATTTAGTACGAGAGAGAATGCGATTATTGTTTGGAGAAATACCGTGCATACGGTAGAAGGACCCCTTAACTTCTAACTTTGAACCAATTTATCTACGTTCCTGTGAAAGATTCAAAAAAGTTATCAACTGATAAATTGTTTATTAAAATGTCAAAAACATTTTATTAATGTGATATATTCTTGACATCTTTTATTGTTGCCAAGAAAAATTAACTCAAGTTTGATAGTGTGGGTGCCCTTCTATTACAGGGTTCTAAAAGTTGTATTTTGAAAAAAAATTCCCGTTCGAAAATTTCAGAATTGTGAGTTTCAAAATTTTTGACATATTGGTTGTATTTAATTCCACAGATAGCCGAAATTCCAAATGCGAATTTTTGGAAATTTTCTGGAAATGTTCAAAATCCATGTTTCTTGAGATGTTACTGTAGCTAGGGCCCATTATGA</canonical>
            <polymorphic>AATTGTTTTCTTTTTCCTAAAGTTCCCACTCTCTTATGAACCACTTCAAACTTTACCGAGTATCCTCTTTTTACCGAGTATCCAAATATTTTCAAGCTCTTTCTATTTTCAGATGGAATAAAAAAGAATCTCCAGGAAGAGAAAGATGAAATTCCGATCGCTGGCCTTGTCGCTCCGTGTGTTCGGCGTCAAGAATCGTCTGTTGCAAGCAAATCAAAATGAGGTGGGTCCCTCCTATTTTTCACTCGATATTTGACACACAACCTTTTTTCCTTTCGCGCAGCATTTTTCTTGCTCTCTACGCTCAAATGAATAGAGACACATTTGCATTTTTTATTTGCTACCTTCCCATCGAAAAAAATTTTGTCTTCTTTTTCTTCGTTTGGTTCCGTTTTTCTGTCCATTTGTCACTAGACTATACACGGGATTAACGGACAGCCCTCCAAAACGACTCGTTCCAATTCGACCTACTTTGTGTCACATCTCATCAAATATGTTTMATGTCAAAAATGAAGTGGTAGAAGTGTTACTTTTTACTACTCAGTTACTTTTTGGAATTTAGTACGAGAGAGAATGCGATTATTGTTTGGAGAAATACCGTGCATACGGTAGAAGGACCCCTTAACTTCTAACTTTGAACCAATTTATCTACGTTCCTGTGAAAGATTCAAAAAAGTTATCAACTGATAAATTGTTTATTAAAATGTCAAAAACATTTTATTAATGTGATATATTCTTGACATCTTTTATTGTTGCCAAGAAAAATTAACTCAAGTTTGATAGTGTGGGTGCCCTTCTATTACAGGGTTCTAAAAGTTGTATTTTGAAAAAAAATTCCCGTTCGAAAATTTCAGAATTGTGAGTTTCAAAATTTTTGACATATTGGTTGTATTTAATTCCACAGATAGCCGAAATTCCAAATGCGAATTTTTGGAAATTTTCTGGAAATGTTCAAAATCCATGTTTCTTGAGATGTTACTGTAGCTAGGGCCCATTATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 460 40</canonical_bands>
                <polymorphic_bands>960 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTTTGTCTTCTTTTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>ACGGTATTTCTCCAAACAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTTTGTCTTCTTTTTCTTCGTTTGGTTCCGTTTTTCTGTCCATTTGTCACTAGACTATACACGGGATTAACGGACAGCCCTCCAAAACGACTCGTTCCAATTCGACCTACTTTGTGTCACATCTCATCAAATATGTTTCATGTCAAAAATGAAGTGGTAGAAGTGTTACTTTTTACTACTCAGTTACTTTTTGGAATTTAGTACGAGAGAGAATGCGATTATTGTTTGGAGAAATACCGT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTTTGTCTTCTTTTTCTTCGTTTGGTTCCGTTTTTCTGTCCATTTGTCACTAGACTATACACGGGATTAACGGACAGCCCTCCAAAACGACTCGTTCCAATTCGACCTACTTTGTGTCACATCTCATCAAATATGTTTMATGTCAAAAATGAAGTGGTAGAAGTGTTACTTTTTACTACTCAGTTACTTTTTGGAATTTAGTACGAGAGAGAATGCGATTATTGTTTGGAGAAATACCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32825</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>354164</contig_pos>
        <strand>+</strand>
        <context>GTAGAAGTGT[A/T]ACTTTTTACT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCACATCTCATCAAATATGTTTCATGTCAAAAATGAAGTGGTAGAAGTGT</left_flank>
        <right_flank>ACTTTTTACTACTCAGTTACTTTTTGGAATTTAGTACGAGAGAGAATGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTCTTATGAACCACTTCAAACTTTACCGAGTATCCTCTTTTTACCGAGTATCCAAATATTTTCAAGCTCTTTCTATTTTCAGATGGAATAAAAAAGAATCTCCAGGAAGAGAAAGATGAAATTCCGATCGCTGGCCTTGTCGCTCCGTGTGTTCGGCGTCAAGAATCGTCTGTTGCAAGCAAATCAAAATGAGGTGGGTCCCTCCTATTTTTCACTCGATATTTGACACACAACCTTTTTTCCTTTCGCGCAGCATTTTTCTTGCTCTCTACGCTCAAATGAATAGAGACACATTTGCATTTTTTATTTGCTACCTTCCCATCGAAAAAAATTTTGTCTTCTTTTTCTTCGTTTGGTTCCGTTTTTCTGTCCATTTGTCACTAGACTATACACGGGATTAACGGACAGCCCTCCAAAACGACTCGTTCCAATTCGACCTACTTTGTGTCACATCTCATCAAATATGTTTCATGTCAAAAATGAAGTGGTAGAAGTGTTACTTTTTACTACTCAGTTACTTTTTGGAATTTAGTACGAGAGAGAATGCGATTATTGTTTGGAGAAATACCGTGCATACGGTAGAAGGACCCCTTAACTTCTAACTTTGAACCAATTTATCTACGTTCCTGTGAAAGATTCAAAAAAGTTATCAACTGATAAATTGTTTATTAAAATGTCAAAAACATTTTATTAATGTGATATATTCTTGACATCTTTTATTGTTGCCAAGAAAAATTAACTCAAGTTTGATAGTGTGGGTGCCCTTCTATTACAGGGTTCTAAAAGTTGTATTTTGAAAAAAAATTCCCGTTCGAAAATTTCAGAATTGTGAGTTTCAAAATTTTTGACATATTGGTTGTATTTAATTCCACAGATAGCCGAAATTCCAAATGCGAATTTTTGGAAATTTTCTGGAAATGTTCAAAATCCATGTTTCTTGAGATGTTACTGTAGCTAGGGCCCATTATGACACATTAGGAACAATTATTCCAATGTAA</canonical>
            <polymorphic>CTCTCTTATGAACCACTTCAAACTTTACCGAGTATCCTCTTTTTACCGAGTATCCAAATATTTTCAAGCTCTTTCTATTTTCAGATGGAATAAAAAAGAATCTCCAGGAAGAGAAAGATGAAATTCCGATCGCTGGCCTTGTCGCTCCGTGTGTTCGGCGTCAAGAATCGTCTGTTGCAAGCAAATCAAAATGAGGTGGGTCCCTCCTATTTTTCACTCGATATTTGACACACAACCTTTTTTCCTTTCGCGCAGCATTTTTCTTGCTCTCTACGCTCAAATGAATAGAGACACATTTGCATTTTTTATTTGCTACCTTCCCATCGAAAAAAATTTTGTCTTCTTTTTCTTCGTTTGGTTCCGTTTTTCTGTCCATTTGTCACTAGACTATACACGGGATTAACGGACAGCCCTCCAAAACGACTCGTTCCAATTCGACCTACTTTGTGTCACATCTCATCAAATATGTTTCATGTCAAAAATGAAGTGGTAGAAGTGTWACTTTTTACTACTCAGTTACTTTTTGGAATTTAGTACGAGAGAGAATGCGATTATTGTTTGGAGAAATACCGTGCATACGGTAGAAGGACCCCTTAACTTCTAACTTTGAACCAATTTATCTACGTTCCTGTGAAAGATTCAAAAAAGTTATCAACTGATAAATTGTTTATTAAAATGTCAAAAACATTTTATTAATGTGATATATTCTTGACATCTTTTATTGTTGCCAAGAAAAATTAACTCAAGTTTGATAGTGTGGGTGCCCTTCTATTACAGGGTTCTAAAAGTTGTATTTTGAAAAAAAATTCCCGTTCGAAAATTTCAGAATTGTGAGTTTCAAAATTTTTGACATATTGGTTGTATTTAATTCCACAGATAGCCGAAATTCCAAATGCGAATTTTTGGAAATTTTCTGGAAATGTTCAAAATCCATGTTTCTTGAGATGTTACTGTAGCTAGGGCCCATTATGACACATTAGGAACAATTATTCCAATGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTTTGTCTTCTTTTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>ACGGTATTTCTCCAAACAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTTTGTCTTCTTTTTCTTCGTTTGGTTCCGTTTTTCTGTCCATTTGTCACTAGACTATACACGGGATTAACGGACAGCCCTCCAAAACGACTCGTTCCAATTCGACCTACTTTGTGTCACATCTCATCAAATATGTTTCATGTCAAAAATGAAGTGGTAGAAGTGTTACTTTTTACTACTCAGTTACTTTTTGGAATTTAGTACGAGAGAGAATGCGATTATTGTTTGGAGAAATACCGT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTTTGTCTTCTTTTTCTTCGTTTGGTTCCGTTTTTCTGTCCATTTGTCACTAGACTATACACGGGATTAACGGACAGCCCTCCAAAACGACTCGTTCCAATTCGACCTACTTTGTGTCACATCTCATCAAATATGTTTCATGTCAAAAATGAAGTGGTAGAAGTGTWACTTTTTACTACTCAGTTACTTTTTGGAATTTAGTACGAGAGAGAATGCGATTATTGTTTGGAGAAATACCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32826</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>354177</contig_pos>
        <strand>+</strand>
        <context>TTTTTACTAC[C/T]CAGTTACTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATATGTTTCATGTCAAAAATGAAGTGGTAGAAGTGTTACTTTTTACTAC</left_flank>
        <right_flank>CAGTTACTTTTTGGAATTTAGTACGAGAGAGAATGCGATTATTGTTTGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACTTCAAACTTTACCGAGTATCCTCTTTTTACCGAGTATCCAAATATTTTCAAGCTCTTTCTATTTTCAGATGGAATAAAAAAGAATCTCCAGGAAGAGAAAGATGAAATTCCGATCGCTGGCCTTGTCGCTCCGTGTGTTCGGCGTCAAGAATCGTCTGTTGCAAGCAAATCAAAATGAGGTGGGTCCCTCCTATTTTTCACTCGATATTTGACACACAACCTTTTTTCCTTTCGCGCAGCATTTTTCTTGCTCTCTACGCTCAAATGAATAGAGACACATTTGCATTTTTTATTTGCTACCTTCCCATCGAAAAAAATTTTGTCTTCTTTTTCTTCGTTTGGTTCCGTTTTTCTGTCCATTTGTCACTAGACTATACACGGGATTAACGGACAGCCCTCCAAAACGACTCGTTCCAATTCGACCTACTTTGTGTCACATCTCATCAAATATGTTTCATGTCAAAAATGAAGTGGTAGAAGTGTTACTTTTTACTACTCAGTTACTTTTTGGAATTTAGTACGAGAGAGAATGCGATTATTGTTTGGAGAAATACCGTGCATACGGTAGAAGGACCCCTTAACTTCTAACTTTGAACCAATTTATCTACGTTCCTGTGAAAGATTCAAAAAAGTTATCAACTGATAAATTGTTTATTAAAATGTCAAAAACATTTTATTAATGTGATATATTCTTGACATCTTTTATTGTTGCCAAGAAAAATTAACTCAAGTTTGATAGTGTGGGTGCCCTTCTATTACAGGGTTCTAAAAGTTGTATTTTGAAAAAAAATTCCCGTTCGAAAATTTCAGAATTGTGAGTTTCAAAATTTTTGACATATTGGTTGTATTTAATTCCACAGATAGCCGAAATTCCAAATGCGAATTTTTGGAAATTTTCTGGAAATGTTCAAAATCCATGTTTCTTGAGATGTTACTGTAGCTAGGGCCCATTATGACACATTAGGAACAATTATTCCAATGTAACGACCACAAAAAC</canonical>
            <polymorphic>CACTTCAAACTTTACCGAGTATCCTCTTTTTACCGAGTATCCAAATATTTTCAAGCTCTTTCTATTTTCAGATGGAATAAAAAAGAATCTCCAGGAAGAGAAAGATGAAATTCCGATCGCTGGCCTTGTCGCTCCGTGTGTTCGGCGTCAAGAATCGTCTGTTGCAAGCAAATCAAAATGAGGTGGGTCCCTCCTATTTTTCACTCGATATTTGACACACAACCTTTTTTCCTTTCGCGCAGCATTTTTCTTGCTCTCTACGCTCAAATGAATAGAGACACATTTGCATTTTTTATTTGCTACCTTCCCATCGAAAAAAATTTTGTCTTCTTTTTCTTCGTTTGGTTCCGTTTTTCTGTCCATTTGTCACTAGACTATACACGGGATTAACGGACAGCCCTCCAAAACGACTCGTTCCAATTCGACCTACTTTGTGTCACATCTCATCAAATATGTTTCATGTCAAAAATGAAGTGGTAGAAGTGTTACTTTTTACTACYCAGTTACTTTTTGGAATTTAGTACGAGAGAGAATGCGATTATTGTTTGGAGAAATACCGTGCATACGGTAGAAGGACCCCTTAACTTCTAACTTTGAACCAATTTATCTACGTTCCTGTGAAAGATTCAAAAAAGTTATCAACTGATAAATTGTTTATTAAAATGTCAAAAACATTTTATTAATGTGATATATTCTTGACATCTTTTATTGTTGCCAAGAAAAATTAACTCAAGTTTGATAGTGTGGGTGCCCTTCTATTACAGGGTTCTAAAAGTTGTATTTTGAAAAAAAATTCCCGTTCGAAAATTTCAGAATTGTGAGTTTCAAAATTTTTGACATATTGGTTGTATTTAATTCCACAGATAGCCGAAATTCCAAATGCGAATTTTTGGAAATTTTCTGGAAATGTTCAAAATCCATGTTTCTTGAGATGTTACTGTAGCTAGGGCCCATTATGACACATTAGGAACAATTATTCCAATGTAACGACCACAAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTTTGTCTTCTTTTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>ACGGTATTTCTCCAAACAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTTTGTCTTCTTTTTCTTCGTTTGGTTCCGTTTTTCTGTCCATTTGTCACTAGACTATACACGGGATTAACGGACAGCCCTCCAAAACGACTCGTTCCAATTCGACCTACTTTGTGTCACATCTCATCAAATATGTTTCATGTCAAAAATGAAGTGGTAGAAGTGTTACTTTTTACTACTCAGTTACTTTTTGGAATTTAGTACGAGAGAGAATGCGATTATTGTTTGGAGAAATACCGT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTTTGTCTTCTTTTTCTTCGTTTGGTTCCGTTTTTCTGTCCATTTGTCACTAGACTATACACGGGATTAACGGACAGCCCTCCAAAACGACTCGTTCCAATTCGACCTACTTTGTGTCACATCTCATCAAATATGTTTCATGTCAAAAATGAAGTGGTAGAAGTGTTACTTTTTACTACYCAGTTACTTTTTGGAATTTAGTACGAGAGAGAATGCGATTATTGTTTGGAGAAATACCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32827</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>404501</contig_pos>
        <strand></strand>
        <context>cagtgtatag[A/C]ctttattttg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTGAGTACTTCACCTTTTTGTATTGAATGTTTTTCTTTTCAGTGTATAG</left_flank>
        <right_flank>CTTTATTTTGCTGCTTCTTTTTATTTCAATTTTTCAAACAAAAGTTTTCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATCAGTTAACAACTTTTTCATATCTTTTACAGGAAGTGAGATATATAGGCTCAAAGTTGACGGTTTGGGGAGGGGCCTCCTATTAGAGTATTTACGGTATTTTTAAAACTAACTTAAGAAGTATCTTCAAAGACTCTTGGTTAAACAACCAAGATAAAAACGGTAAATTTTGGATTGAACAATTCGAAATTGAAACATTTTTGAGGTTGGCTAAAAAAATTGTTTTACTTCTAGGATCAGACTTGCAAAAACCCGGATTTAAAGTTTAGGAATTTTGTTTCTTGACTCCTGAGTGTTTTCTTATTGATTTTAAAATTAACGAATTAGAAACTTTCAGGAAAATTATTCTTGAGTAGTAAGATAAAAAATAATGAACAACAATATAACTTCTGAAACAACGACTACTGAAATCTCGAAAAAAAACCCTCAAAACAGAAATTCTCTGATAGTGAGTACTTCACCTTTTTGTATTGAATGTTTTTCTTTTCAGTGTATAGACTTTATTTTGCTGCTTCTTTTTATTTCAATTTTTCAAACAAAAGTTTTCTCAAAAAATTGCATGTATAGGGGTACAGGAATTTAACATTATTTTGGAAAAAAGTTGAAATAAGTCTCGTAACTCAAGGGCTCGACCTATATTTGAACACGTATATGTACGTTACTCGTCTTGAGAAATCTGATCGGTATGGTCCCCCGAAGACGTTTTTCCAAAAATTGGCATTTTTTGAATTCGGTGGAACTCGAAATTTTCATATTTTCTGTTTTCCTGGAATTCCCTTTGAAGATGGAGCATAGGTGCAATTAGCAACAAGCGCGCCATCTTATCACCTTTCAAATAAAAATAGTTTAAACGTCTATCACAAAAATGAACAAAGTTATGGCCGTTCGAAGGGTGCCGACTCTGAACTCGCGAAAAATCATAAAATGCCTTGTCATTTCAACAGGCCTTCAAACGTTCCGCTATAATTTTGTGGTTGATCTAGATAGCCTGTGTGAAA</canonical>
            <polymorphic>TTATCAGTTAACAACTTTTTCATATCTTTTACAGGAAGTGAGATATATAGGCTCAAAGTTGACGGTTTGGGGAGGGGCCTCCTATTAGAGTATTTACGGTATTTTTAAAACTAACTTAAGAAGTATCTTCAAAGACTCTTGGTTAAACAACCAAGATAAAAACGGTAAATTTTGGATTGAACAATTCGAAATTGAAACATTTTTGAGGTTGGCTAAAAAAATTGTTTTACTTCTAGGATCAGACTTGCAAAAACCCGGATTTAAAGTTTAGGAATTTTGTTTCTTGACTCCTGAGTGTTTTCTTATTGATTTTAAAATTAACGAATTAGAAACTTTCAGGAAAATTATTCTTGAGTAGTAAGATAAAAAATAATGAACAACAATATAACTTCTGAAACAACGACTACTGAAATCTCGAAAAAAAACCCTCAAAACAGAAATTCTCTGATAGTGAGTACTTCACCTTTTTGTATTGAATGTTTTTCTTTTCAGTGTATAGMCTTTATTTTGCTGCTTCTTTTTATTTCAATTTTTCAAACAAAAGTTTTCTCAAAAAATTGCATGTATAGGGGTACAGGAATTTAACATTATTTTGGAAAAAAGTTGAAATAAGTCTCGTAACTCAAGGGCTCGACCTATATTTGAACACGTATATGTACGTTACTCGTCTTGAGAAATCTGATCGGTATGGTCCCCCGAAGACGTTTTTCCAAAAATTGGCATTTTTTGAATTCGGTGGAACTCGAAATTTTCATATTTTCTGTTTTCCTGGAATTCCCTTTGAAGATGGAGCATAGGTGCAATTAGCAACAAGCGCGCCATCTTATCACCTTTCAAATAAAAATAGTTTAAACGTCTATCACAAAAATGAACAAAGTTATGGCCGTTCGAAGGGTGCCGACTCTGAACTCGCGAAAAATCATAAAATGCCTTGTCATTTCAACAGGCCTTCAAACGTTCCGCTATAATTTTGTGGTTGATCTAGATAGCCTGTGTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGATAGTGAGTACTTCACCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CGTTTATCTTTTCTCAAATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>576</pcr_amplicon_size>
		<canonical_amplicon>CTGATAGTGAGTACTTCACCTTTTTGTATTGAATGTTTTTCTTTTCAGTGTATAGACTTTATTTTGCTGCTTCTTTTTA</canonical_amplicon>
		<polymorphic_amplicon>CTGATAGTGAGTACTTCACCTTTTTGTATTGAATGTTTTTCTTTTCAGTGTATAGMCTTTATTTTGCTGCTTCTTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32828</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>404578</contig_pos>
        <strand></strand>
        <context>taggggtaca[G/T]gaatttaaca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAATTTTTCAAACAAAAGTTTTCTCAAAAAATTGCATGTATAGGGGTACA</left_flank>
        <right_flank>GAATTTAACATTATTTTGGAAAAAAGTTGAAATAAGTCTCGTAACTCAAG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCCTATTAGAGTATTTACGGTATTTTTAAAACTAACTTAAGAAGTATCTTCAAAGACTCTTGGTTAAACAACCAAGATAAAAACGGTAAATTTTGGATTGAACAATTCGAAATTGAAACATTTTTGAGGTTGGCTAAAAAAATTGTTTTACTTCTAGGATCAGACTTGCAAAAACCCGGATTTAAAGTTTAGGAATTTTGTTTCTTGACTCCTGAGTGTTTTCTTATTGATTTTAAAATTAACGAATTAGAAACTTTCAGGAAAATTATTCTTGAGTAGTAAGATAAAAAATAATGAACAACAATATAACTTCTGAAACAACGACTACTGAAATCTCGAAAAAAAACCCTCAAAACAGAAATTCTCTGATAGTGAGTACTTCACCTTTTTGTATTGAATGTTTTTCTTTTCAGTGTATAGACTTTATTTTGCTGCTTCTTTTTATTTCAATTTTTCAAACAAAAGTTTTCTCAAAAAATTGCATGTATAGGGGTACAGGAATTTAACATTATTTTGGAAAAAAGTTGAAATAAGTCTCGTAACTCAAGGGCTCGACCTATATTTGAACACGTATATGTACGTTACTCGTCTTGAGAAATCTGATCGGTATGGTCCCCCGAAGACGTTTTTCCAAAAATTGGCATTTTTTGAATTCGGTGGAACTCGAAATTTTCATATTTTCTGTTTTCCTGGAATTCCCTTTGAAGATGGAGCATAGGTGCAATTAGCAACAAGCGCGCCATCTTATCACCTTTCAAATAAAAATAGTTTAAACGTCTATCACAAAAATGAACAAAGTTATGGCCGTTCGAAGGGTGCCGACTCTGAACTCGCGAAAAATCATAAAATGCCTTGTCATTTCAACAGGCCTTCAAACGTTCCGCTATAATTTTGTGGTTGATCTAGATAGCCTGTGTGAAAAATTTGAGAAAAGATAAACGAAAATCCCCACAGAAAACCGGAAACTGGTTTCAAGCATGAATTCAGAATAATGGGAA</canonical>
            <polymorphic>CCTCCTATTAGAGTATTTACGGTATTTTTAAAACTAACTTAAGAAGTATCTTCAAAGACTCTTGGTTAAACAACCAAGATAAAAACGGTAAATTTTGGATTGAACAATTCGAAATTGAAACATTTTTGAGGTTGGCTAAAAAAATTGTTTTACTTCTAGGATCAGACTTGCAAAAACCCGGATTTAAAGTTTAGGAATTTTGTTTCTTGACTCCTGAGTGTTTTCTTATTGATTTTAAAATTAACGAATTAGAAACTTTCAGGAAAATTATTCTTGAGTAGTAAGATAAAAAATAATGAACAACAATATAACTTCTGAAACAACGACTACTGAAATCTCGAAAAAAAACCCTCAAAACAGAAATTCTCTGATAGTGAGTACTTCACCTTTTTGTATTGAATGTTTTTCTTTTCAGTGTATAGACTTTATTTTGCTGCTTCTTTTTATTTCAATTTTTCAAACAAAAGTTTTCTCAAAAAATTGCATGTATAGGGGTACAKGAATTTAACATTATTTTGGAAAAAAGTTGAAATAAGTCTCGTAACTCAAGGGCTCGACCTATATTTGAACACGTATATGTACGTTACTCGTCTTGAGAAATCTGATCGGTATGGTCCCCCGAAGACGTTTTTCCAAAAATTGGCATTTTTTGAATTCGGTGGAACTCGAAATTTTCATATTTTCTGTTTTCCTGGAATTCCCTTTGAAGATGGAGCATAGGTGCAATTAGCAACAAGCGCGCCATCTTATCACCTTTCAAATAAAAATAGTTTAAACGTCTATCACAAAAATGAACAAAGTTATGGCCGTTCGAAGGGTGCCGACTCTGAACTCGCGAAAAATCATAAAATGCCTTGTCATTTCAACAGGCCTTCAAACGTTCCGCTATAATTTTGTGGTTGATCTAGATAGCCTGTGTGAAAAATTTGAGAAAAGATAAACGAAAATCCCCACAGAAAACCGGAAACTGGTTTCAAGCATGAATTCAGAATAATGGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGATAGTGAGTACTTCACCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CGTTTATCTTTTCTCAAATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>576</pcr_amplicon_size>
		<canonical_amplicon>CTGATAGTGAGTACTTCACCTTTTTGTATTGAATGTTTTTCTTTTCAGTGTATAGACTTTATTTTGCTGCTTCTTTTTATTTCAATTTTTCAAACAAAAGTTTTCTCAAAAAATTGCATGTATAGGGGTACAGGAATTTAACATTATTTTGGAAAAAAGTTGAAATAAGTCTCGTAACTCAAGGGCTCGACCTATATTTGAACACGTATATGTACGTTACTCGTCTTGAGAAATCTGATCGGTATGGTCCCCCGAAGACGTTTTTCCAAAAATTGGCATTTTTTGAATTCGGTGGAACTCGAAATTTTCATATTTTCTGTTTTCCTGGAATTCCCTTTGAAGATGGAGCATAGGTGCAATTAGCAACAAGCGCGCCATCTTATCACCTTTCAAATAAAAATAGTTTAAACGTCTATCACAAAAATGAACAAAGTTATGGCCGTTCGAAGGGTGCCGACTCTGAACTCGCGAAAAATCATAAAATGCCTTGTCATTTCAACAGGCCTTCAAACGTTCCGCTATAATTTTGTGGTTGATCTAGATAGCCTGTGTGAAAAATTTGAGAAAAGATAAACG</canonical_amplicon>
		<polymorphic_amplicon>CTGATAGTGAGTACTTCACCTTTTTGTATTGAATGTTTTTCTTTTCAGTGTATAGACTTTATTTTGCTGCTTCTTTTTATTTCAATTTTTCAAACAAAAGTTTTCTCAAAAAATTGCATGTATAGGGGTACAKGAATTTAACATTATTTTGGAAAAAAGTTGAAATAAGTCTCGTAACTCAAGGGCTCGACCTATATTTGAACACGTATATGTACGTTACTCGTCTTGAGAAATCTGATCGGTATGGTCCCCCGAAGACGTTTTTCCAAAAATTGGCATTTTTTGAATTCGGTGGAACTCGAAATTTTCATATTTTCTGTTTTCCTGGAATTCCCTTTGAAGATGGAGCATAGGTGCAATTAGCAACAAGCGCGCCATCTTATCACCTTTCAAATAAAAATAGTTTAAACGTCTATCACAAAAATGAACAAAGTTATGGCCGTTCGAAGGGTGCCGACTCTGAACTCGCGAAAAATCATAAAATGCCTTGTCATTTCAACAGGCCTTCAAACGTTCCGCTATAATTTTGTGGTTGATCTAGATAGCCTGTGTGAAAAATTTGAGAAAAGATAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32829</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>428304</contig_pos>
        <strand>+</strand>
        <context>GAAGGATATG[A/T]AACTCGACYC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTATCAGCTCCGAGCACTCACTTGGCAAAGGATCCATCAGAAGGATATG</left_flank>
        <right_flank>AACTCGACTCATTTCCACAGTTGGGATTCCTTCGATGCCTCCTCCATTAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTAGACCTGTTGCGAGCAGTGTGAGCACCAAAATGCACTCAAATCTCATGCCAATCAAACCGGTAAATCTATTTGAGATTGTTACTACCGTATTTCCTCTAATAGAACCCCTCGCAAGCCGTTGGCTTTGAGCTCAATTATCTCAATTTCTGTGAAAGCTATCAAAACTTATTCAATTGATAAATTTTTCACCATGATATCACTAACATTTTATCAGTTGAGACATTTTTGATATCTTTCACAGGAATCGAGATAATTGAGCTCAAAGTTGACGGTTTGGATGGGCTTCAAGAAGAAAGTTTGAAAATATTTCAGTCTGAAGTCCGTCAAGTGGCCGCATTCTCACGAGATTCTCACCTTGGAAACTGGCCGATCCCGGGAGCAAAACCATACGAACCTTCGATGAAACCAGTATCTACCTACCCAATGTCACCGATATCACCTGAATTATCAGCTCCGAGCACTCACTTGGCAAAGGATCCATCAGAAGGATATGAAACTCGACTCATTTCCACAGTTGGGATTCCTTCGATGCCTCCTCCATTATTCCCGAATCTTCCACCTCTTCCAATCCCTCAAAGATCCCCTCATGTGATGGCTCGTGTTTTTACAACGTCTACTACTGCATTTCCCCCAATCATGTTCACTTTTCCAACCACAACAACTCCTCCTCCTCTTCCATTACCAATTATTCCGAATGTTCATTTCAAACAAGGAGTTGGAGTTCCATTTGCTCCTGGAATCCTTCCATCTACAAAAGTGGATGCTTCTCAATGGAATGATCCGAATGCATATGCAACTCCACCAACTGTTTCTAATGTGGATGTGACAACTCCTAAAACATACCGAGAACAACCACCAACTGCAGATGCGCCATTTTCATCGGATAATGCTAATAGCAAGGAGATCCACGAAGCATCTGCAGATGAGACATCCGGTGCAAGCTCAGAAAAGAGCAAAAAACCTCAATCAGATGATCCAGGAAGAAATCCAGTTA</canonical>
            <polymorphic>CAATTAGACCTGTTGCGAGCAGTGTGAGCACCAAAATGCACTCAAATCTCATGCCAATCAAACCGGTAAATCTATTTGAGATTGTTACTACCGTATTTCCTCTAATAGAACCCCTCGCAAGCCGTTGGCTTTGAGCTCAATTATCTCAATTTCTGTGAAAGCTATCAAAACTTATTCAATTGATAAATTTTTCACCATGATATCACTAACATTTTATCAGTTGAGACATTTTTGATATCTTTCACAGGAATCGAGATAATTGAGCTCAAAGTTGACGGTTTGGATGGGCTTCAAGAAGAAAGTTTGAAAATATTTCAGTCTGAAGTCCGTCAAGTGGCCGCATTCTCACGAGATTCTCACCTTGGAAACTGGCCGATCCCGGGAGCAAAACCATACGAACCTTCGATGAAACCAGTATCTACCTACCCAATGTCACCGATATCACCTGAATTATCAGCTCCGAGCACTCACTTGGCAAAGGATCCATCAGAAGGATATGWAACTCGACTCATTTCCACAGTTGGGATTCCTTCGATGCCTCCTCCATTATTCCCGAATCTTCCACCTCTTCCAATCCCTCAAAGATCCCCTCATGTGATGGCTCGTGTTTTTACAACGTCTACTACTGCATTTCCCCCAATCATGTTCACTTTTCCAACCACAACAACTCCTCCTCCTCTTCCATTACCAATTATTCCGAATGTTCATTTCAAACAAGGAGTTGGAGTTCCATTTGCTCCTGGAATCCTTCCATCTACAAAAGTGGATGCTTCTCAATGGAATGATCCGAATGCATATGCAACTCCACCAACTGTTTCTAATGTGGATGTGACAACTCCTAAAACATACCGAGAACAACCACCAACTGCAGATGCGCCATTTTCATCGGATAATGCTAATAGCAAGGAGATCCACGAAGCATCTGCAGATGAGACATCCGGTGCAAGCTCAGAAAAGAGCAAAAAACCTCAATCAGATGATCCAGGAAGAAATCCAGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCAGTATCTACCTACCCAATGT</pcr_primer_p1>
		<pcr_primer_p2>TTGGAAAAGTGAACATGATTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACCAGTATCTACCTACCCAATGTCACCGATATCACCTGAATTATCAGCTCCGAGCACTCACTTGGCAAAGGATCCATCAGAAGGATATGAAACTCGACTCATTTCCACAGTTGGGATTCCTTCGATGCCTCCTCCATTATTCCCGAATCTTCCACCTCTTCCAATCCCTCAAAGATCCCCTCATGTGATGGCTCGTGTTTTTACAACGTCTACTACTGCATTTCCCCCAATCATGTTCACTTTTCCAA</canonical_amplicon>
		<polymorphic_amplicon>ACCAGTATCTACCTACCCAATGTCACCGATATCACCTGAATTATCAGCTCCGAGCACTCACTTGGCAAAGGATCCATCAGAAGGATATGWAACTCGACTCATTTCCACAGTTGGGATTCCTTCGATGCCTCCTCCATTATTCCCGAATCTTCCACCTCTTCCAATCCCTCAAAGATCCCCTCATGTGATGGCTCGTGTTTTTACAACGTCTACTACTGCATTTCCCCCAATCATGTTCACTTTTCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32830</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>428313</contig_pos>
        <strand>+</strand>
        <context>GWAACTCGAC[C/T]CATTTCCACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCGAGCACTCACTTGGCAAAGGATCCATCAGAAGGATATGAAACTCGAC</left_flank>
        <right_flank>CATTTCCACAGTTGGGATTCCTTCGATGCCTCCTCCATTATTCCCGAATC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTTGCGAGCAGTGTGAGCACCAAAATGCACTCAAATCTCATGCCAATCAAACCGGTAAATCTATTTGAGATTGTTACTACCGTATTTCCTCTAATAGAACCCCTCGCAAGCCGTTGGCTTTGAGCTCAATTATCTCAATTTCTGTGAAAGCTATCAAAACTTATTCAATTGATAAATTTTTCACCATGATATCACTAACATTTTATCAGTTGAGACATTTTTGATATCTTTCACAGGAATCGAGATAATTGAGCTCAAAGTTGACGGTTTGGATGGGCTTCAAGAAGAAAGTTTGAAAATATTTCAGTCTGAAGTCCGTCAAGTGGCCGCATTCTCACGAGATTCTCACCTTGGAAACTGGCCGATCCCGGGAGCAAAACCATACGAACCTTCGATGAAACCAGTATCTACCTACCCAATGTCACCGATATCACCTGAATTATCAGCTCCGAGCACTCACTTGGCAAAGGATCCATCAGAAGGATATGAAACTCGACTCATTTCCACAGTTGGGATTCCTTCGATGCCTCCTCCATTATTCCCGAATCTTCCACCTCTTCCAATCCCTCAAAGATCCCCTCATGTGATGGCTCGTGTTTTTACAACGTCTACTACTGCATTTCCCCCAATCATGTTCACTTTTCCAACCACAACAACTCCTCCTCCTCTTCCATTACCAATTATTCCGAATGTTCATTTCAAACAAGGAGTTGGAGTTCCATTTGCTCCTGGAATCCTTCCATCTACAAAAGTGGATGCTTCTCAATGGAATGATCCGAATGCATATGCAACTCCACCAACTGTTTCTAATGTGGATGTGACAACTCCTAAAACATACCGAGAACAACCACCAACTGCAGATGCGCCATTTTCATCGGATAATGCTAATAGCAAGGAGATCCACGAAGCATCTGCAGATGAGACATCCGGTGCAAGCTCAGAAAAGAGCAAAAAACCTCAATCAGATGATCCAGGAAGAAATCCAGTTACATCAGTGC</canonical>
            <polymorphic>CTGTTGCGAGCAGTGTGAGCACCAAAATGCACTCAAATCTCATGCCAATCAAACCGGTAAATCTATTTGAGATTGTTACTACCGTATTTCCTCTAATAGAACCCCTCGCAAGCCGTTGGCTTTGAGCTCAATTATCTCAATTTCTGTGAAAGCTATCAAAACTTATTCAATTGATAAATTTTTCACCATGATATCACTAACATTTTATCAGTTGAGACATTTTTGATATCTTTCACAGGAATCGAGATAATTGAGCTCAAAGTTGACGGTTTGGATGGGCTTCAAGAAGAAAGTTTGAAAATATTTCAGTCTGAAGTCCGTCAAGTGGCCGCATTCTCACGAGATTCTCACCTTGGAAACTGGCCGATCCCGGGAGCAAAACCATACGAACCTTCGATGAAACCAGTATCTACCTACCCAATGTCACCGATATCACCTGAATTATCAGCTCCGAGCACTCACTTGGCAAAGGATCCATCAGAAGGATATGAAACTCGACYCATTTCCACAGTTGGGATTCCTTCGATGCCTCCTCCATTATTCCCGAATCTTCCACCTCTTCCAATCCCTCAAAGATCCCCTCATGTGATGGCTCGTGTTTTTACAACGTCTACTACTGCATTTCCCCCAATCATGTTCACTTTTCCAACCACAACAACTCCTCCTCCTCTTCCATTACCAATTATTCCGAATGTTCATTTCAAACAAGGAGTTGGAGTTCCATTTGCTCCTGGAATCCTTCCATCTACAAAAGTGGATGCTTCTCAATGGAATGATCCGAATGCATATGCAACTCCACCAACTGTTTCTAATGTGGATGTGACAACTCCTAAAACATACCGAGAACAACCACCAACTGCAGATGCGCCATTTTCATCGGATAATGCTAATAGCAAGGAGATCCACGAAGCATCTGCAGATGAGACATCCGGTGCAAGCTCAGAAAAGAGCAAAAAACCTCAATCAGATGATCCAGGAAGAAATCCAGTTACATCAGTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>266 239 188 154 104 30 19</canonical_bands>
                <polymorphic_bands>266 239 188 173 104 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAGTATCTACCTACCCAATGT</pcr_primer_p1>
		<pcr_primer_p2>TTGGAAAAGTGAACATGATTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACCAGTATCTACCTACCCAATGTCACCGATATCACCTGAATTATCAGCTCCGAGCACTCACTTGGCAAAGGATCCATCAGAAGGATATGAAACTCGACTCATTTCCACAGTTGGGATTCCTTCGATGCCTCCTCCATTATTCCCGAATCTTCCACCTCTTCCAATCCCTCAAAGATCCCCTCATGTGATGGCTCGTGTTTTTACAACGTCTACTACTGCATTTCCCCCAATCATGTTCACTTTTCCAA</canonical_amplicon>
		<polymorphic_amplicon>ACCAGTATCTACCTACCCAATGTCACCGATATCACCTGAATTATCAGCTCCGAGCACTCACTTGGCAAAGGATCCATCAGAAGGATATGAAACTCGACYCATTTCCACAGTTGGGATTCCTTCGATGCCTCCTCCATTATTCCCGAATCTTCCACCTCTTCCAATCCCTCAAAGATCCCCTCATGTGATGGCTCGTGTTTTTACAACGTCTACTACTGCATTTCCCCCAATCATGTTCACTTTTCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32831</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>430169</contig_pos>
        <strand>+</strand>
        <context>TACATAAATC[G/T]TTTTTTTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGTCATTCCTTTTTCTTTTTTCTTCTTTTTTTTATGACTTACATAAATC</left_flank>
        <right_flank>TTTTTTTTTAATTTTCCCATAAAAAACCGTTCTAAATGATATCATAAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAAAGCTTTCAAATTTCCTGGGCCCGATGATGTCTACTTTTCATGTACAATCGAGTTCACTCCGATGATCAAAGCTCCAAATATCTGCTCAAAACTGCGAAGAAGACGTGAAATTTTGGAAGAGGGAATGTCTGAAATGAGGTTGTTTGACAGTGTCAGTGTCGAATTGGACGATGGAGATACGAATGTGAAGACAGGTGAGTCGTTTGAGATGTTTTGATTAATCTAGAGTCTTCTTTTTCAGATCCTCTAAAATCTGAAGACTGTGACACTGAAAAACATCTCTACATCCTTGTCATATGCATCCTTCTGGCCTCCACAACGTTATCACTTTTCTCCAATCTTTATCAGTATATCAGAGCACAATACAAATAGGTCGTCTTCCCCATTTCCTTTTCTTTCTTTTCTCTTTTCTTTTTGCGGGTTTTCCACGATGAACTCTTTTTTTCGTCATTCCTTTTTCTTTTTTCTTCTTTTTTTTATGACTTACATAAATCTTTTTTTTTTAATTTTCCCATAAAAAACCGTTCTAAATGATATCATAAATGTTTGAATTGTCTCGGTCAGGTATAAAAGTGCAACTCTTTGTCACCCCTCTACCGAAAAGTGCAAACGCCTATTTATGGGAAATGACTGGTCATCTTTTTGTTTTCAAATCGTTCTGTTTGGAAAAAGAAAATTTCCAAAAATAGAATTATTCCGATACCGTAAATCCTGTATTAAAACGGCCTTTTTAATAGGATGGGGGAAGAATAGAAGGGCCCTCCTAGTTGGGCTTGGAACAATAAAAGGGAATATAAATTTCCAAAAGTTTTTGACAAAAATTCGCTAAGAAAATACTTAAAGGAGGCCAGACAGCAAAAATTTTGTGGGACAGTTTGGGGGACGAAATCGCGCCGCGCTTATGTAGGCCATTGGTCGGCACCTGCGCGCCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCTGAGCTGTCCAGCATGAGTTCAACTCCTCAT</canonical>
            <polymorphic>ATAAAAGCTTTCAAATTTCCTGGGCCCGATGATGTCTACTTTTCATGTACAATCGAGTTCACTCCGATGATCAAAGCTCCAAATATCTGCTCAAAACTGCGAAGAAGACGTGAAATTTTGGAAGAGGGAATGTCTGAAATGAGGTTGTTTGACAGTGTCAGTGTCGAATTGGACGATGGAGATACGAATGTGAAGACAGGTGAGTCGTTTGAGATGTTTTGATTAATCTAGAGTCTTCTTTTTCAGATCCTCTAAAATCTGAAGACTGTGACACTGAAAAACATCTCTACATCCTTGTCATATGCATCCTTCTGGCCTCCACAACGTTATCACTTTTCTCCAATCTTTATCAGTATATCAGAGCACAATACAAATAGGTCGTCTTCCCCATTTCCTTTTCTTTCTTTTCTCTTTTCTTTTTGCGGGTTTTCCACGATGAACTCTTTTTTTCGTCATTCCTTTTTCTTTTTTCTTCTTTTTTTTATGACTTACATAAATCKTTTTTTTTTAATTTTCCCATAAAAAACCGTTCTAAATGATATCATAAATGTTTGAATTGTCTCGGTCAGGTATAAAAGTGCAACTCTTTGTCACCCCTCTACCGAAAAGTGCAAACGCCTATTTATGGGAAATGACTGGTCATCTTTTTGTTTTCAAATCGTTCTGTTTGGAAAAAGAAAATTTCCAAAAATAGAATTATTCCGATACCGTAAATCCTGTATTAAAACGGCCTTTTTAATAGGATGGGGGAAGAATAGAAGGGCCCTCCTAGTTGGGCTTGGAACAATAAAAGGGAATATAAATTTCCAAAAGTTTTTGACAAAAATTCGCTAAGAAAATACTTAAAGGAGGCCAGACAGCAAAAATTTTGTGGGACAGTTTGGGGGACGAAATCGCGCCGCGCTTATGTAGGCCATTGGTCGGCACCTGCGCGCCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCTGAGCTGTCCAGCATGAGTTCAACTCCTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTTTTCTCCAATCTTTATCAG</pcr_primer_p1>
		<pcr_primer_p2>CACTTTTATACCTGACCGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACTTTTCTCCAATCTTTATCAGTATATCAGAGCACAATACAAATAGGTCGTCTTCCCCATTTCCTTTTCTTTCTTTTCTCTTTTCTTTTTGCGGGTTTTCCACGATGAACTCTTTTTTTCGTCATTCCTTTTTCTTTTTTCTTCTTTTTTTTATGACTTACATAAATCTTTTTTTTTTAATTTTCCCATAAAAAACCGTTCTAAATGATATCATAAATGTTTGAATTGTCTCGGTCAGGTATAAAAGTG</canonical_amplicon>
		<polymorphic_amplicon>CACTTTTCTCCAATCTTTATCAGTATATCAGAGCACAATACAAATAGGTCGTCTTCCCCATTTCCTTTTCTTTCTTTTCTCTTTTCTTTTTGCGGGTTTTCCACGATGAACTCTTTTTTTCGTCATTCCTTTTTCTTTTTTCTTCTTTTTTTTATGACTTACATAAATCKTTTTTTTTTAATTTTCCCATAAAAAACCGTTCTAAATGATATCATAAATGTTTGAATTGTCTCGGTCAGGTATAAAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32832</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>430498</contig_pos>
        <strand>+</strand>
        <context>GACAAAAATT[C/T]GCTAAGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGAACAATAAAAGGGAATATAAATTTCCAAAAGTTTTTGACAAAAATT</left_flank>
        <right_flank>GCTAAGAAAATACTTAAAGGAGGCCAGACAGCAAAAATTTTGTGGGACAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACTTTTCTCCAATCTTTATCAGTATATCAGAGCACAATACAAATAGGTCGTCTTCCCCATTTCCTTTTCTTTCTTTTCTCTTTTCTTTTTGCGGGTTTTCCACGATGAACTCTTTTTTTCGTCATTCCTTTTTCTTTTTTCTTCTTTTTTTTATGACTTACATAAATCTTTTTTTTTTAATTTTCCCATAAAAAACCGTTCTAAATGATATCATAAATGTTTGAATTGTCTCGGTCAGGTATAAAAGTGCAACTCTTTGTCACCCCTCTACCGAAAAGTGCAAACGCCTATTTATGGGAAATGACTGGTCATCTTTTTGTTTTCAAATCGTTCTGTTTGGAAAAAGAAAATTTCCAAAAATAGAATTATTCCGATACCGTAAATCCTGTATTAAAACGGCCTTTTTAATAGGATGGGGGAAGAATAGAAGGGCCCTCCTAGTTGGGCTTGGAACAATAAAAGGGAATATAAATTTCCAAAAGTTTTTGACAAAAATTCGCTAAGAAAATACTTAAAGGAGGCCAGACAGCAAAAATTTTGTGGGACAGTTTGGGGGACGAAATCGCGCCGCGCTTATGTAGGCCATTGGTCGGCACCTGCGCGCCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCTGAGCTGTCCAGCATGAGTTCAACTCCTCATGTGGGTTCTCCAGGCAAAACATCAGGAAAACTTTTTTTTTTTGGTGTCTGGTTTTTTTGGTGTTTTTTTGGTGTCTTTAAATCACTGTTGTGAGAAACTTATCTGTTCCCAAAATTTACAAAAAAATATGCTATAAATTTCAGGCATACAAAAATTGGGATTACGTATTCGAATTCACATATTCTTGATTCTTCCGAAAGTTTCGAAATAGGAAAATTCTGAAAATCTAAAGCTAAAGCTAAAACTACACTTTTCTTTAAAAAATCGGAAATACATAAATTTGAAAGTCCAGGAATTTAGAAACTCCAATGTTAGAAAATTCGAAAATT</canonical>
            <polymorphic>TCACTTTTCTCCAATCTTTATCAGTATATCAGAGCACAATACAAATAGGTCGTCTTCCCCATTTCCTTTTCTTTCTTTTCTCTTTTCTTTTTGCGGGTTTTCCACGATGAACTCTTTTTTTCGTCATTCCTTTTTCTTTTTTCTTCTTTTTTTTATGACTTACATAAATCTTTTTTTTTTAATTTTCCCATAAAAAACCGTTCTAAATGATATCATAAATGTTTGAATTGTCTCGGTCAGGTATAAAAGTGCAACTCTTTGTCACCCCTCTACCGAAAAGTGCAAACGCCTATTTATGGGAAATGACTGGTCATCTTTTTGTTTTCAAATCGTTCTGTTTGGAAAAAGAAAATTTCCAAAAATAGAATTATTCCGATACCGTAAATCCTGTATTAAAACGGCCTTTTTAATAGGATGGGGGAAGAATAGAAGGGCCCTCCTAGTTGGGCTTGGAACAATAAAAGGGAATATAAATTTCCAAAAGTTTTTGACAAAAATTYGCTAAGAAAATACTTAAAGGAGGCCAGACAGCAAAAATTTTGTGGGACAGTTTGGGGGACGAAATCGCGCCGCGCTTATGTAGGCCATTGGTCGGCACCTGCGCGCCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCTGAGCTGTCCAGCATGAGTTCAACTCCTCATGTGGGTTCTCCAGGCAAAACATCAGGAAAACTTTTTTTTTTTGGTGTCTGGTTTTTTTGGTGTTTTTTTGGTGTCTTTAAATCACTGTTGTGAGAAACTTATCTGTTCCCAAAATTTACAAAAAAATATGCTATAAATTTCAGGCATACAAAAATTGGGATTACGTATTCGAATTCACATATTCTTGATTCTTCCGAAAGTTTCGAAATAGGAAAATTCTGAAAATCTAAAGCTAAAGCTAAAACTACACTTTTCTTTAAAAAATCGGAAATACATAAATTTGAAAGTCCAGGAATTTAGAAACTCCAATGTTAGAAAATTCGAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>350 248 122 63 43 40 36 24 23 23 16 12</canonical_bands>
                <polymorphic_bands>350 248 122 63 63 43 36 24 23 16 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTGGAACAATAAAAGGGAATA</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGTTTTCCTGATGTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>CTTGGAACAATAAAAGGGAATATAAATTTCCAAAAGTTTTTGACAAAAATTCGCTAAGAAAATACTTAAAGGAGGCCAGACAGCAAAAATTTTGTGGGACAGTTTGGGGGACGAAATCGCGCCGCGCTTATGTAGGCCATTGGTCGGCACCTGCGCGCCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCTGAGCTGTCCAGCATGAGTTCAACTCCTCATGTGGGTTCTCCAGGCAAAACATCAGGAAAACTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CTTGGAACAATAAAAGGGAATATAAATTTCCAAAAGTTTTTGACAAAAATTYGCTAAGAAAATACTTAAAGGAGGCCAGACAGCAAAAATTTTGTGGGACAGTTTGGGGGACGAAATCGCGCCGCGCTTATGTAGGCCATTGGTCGGCACCTGCGCGCCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCTGAGCTGTCCAGCATGAGTTCAACTCCTCATGTGGGTTCTCCAGGCAAAACATCAGGAAAACTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32833</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>469642</contig_pos>
        <strand>+</strand>
        <context>CCATCCCACA[A/G]GCTAATCTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAACTCGGGATATTGATAAGTTGTTCTAAACACCCCACCCCATCCCACA</left_flank>
        <right_flank>GCTAATCTAATCTTATCTATGTACTAACTTGATTGCATTCCGATCCCTAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACGGAAAGTCGGATGGTCTCTACGGAAACAAGAAAGACTGCTCCGCAATTCTTCAGGTATCATTTTAAATTAAATATACAGTGACTTAATTTATGTTTTCAGTGCTTCGGAGGAGAACTGTTCGAGCACGCATCTTGTCCATCAAATCTCGCTTTCAACGAGTTGACAGCCAAATGCGATTACCCACAGAAAGTCAACGGATGCGAGAATCACGGAAGAACAGAGGGAGTGTGCTCCGAGCACGGAGCCTTCATCGCCGACGTCAACAACTGCTCAGTATTCTATCGCTGTGTATGGGGACGTAAAGTCGTGATGAGATGCCCGTCAGGCACCGTCTTCAATCCAGCACTCTCGGTATGCGATTGGCCGAGCGCCGTTCCATCCTGCGGTGCCGCTCCACAAGCCGCCGGCGACAGCTCATACGGTACTTCTTCTTCGTACAACGATGATAACTCGGGATATTGATAAGTTGTTCTAAACACCCCACCCCATCCCACAGGCTAATCTAATCTTATCTATGTACTAACTTGATTGCATTCCGATCCCTACCACAAGATCTATACCTCCAATTATTTAGCATCCATTCCCCCTAACTTTTCATGTTGTCATAATAATCTGATTTATTTGCATGCTCAACGATACCCTGAAGTTTTAAATTTTGTTAAATAAATCGGCGAGCACAGACATTAGAATATCGAACAGAACTTCGAAAAGGAGAAGAAAAAGACACACACCGCCCAGCCCCAACCACATTCCTGCGCGCAAAACTTGCACTTTTTTTCGGACCTCTCTGAGTTTTCAGTGTTGTTTTCGAAATCGCTTCATTTCGATCAATCGACCATTTCAGAAGAGAGAAACGATTTCGAAAGAAAAAGAGATGGAGAGAAAAACAGTGGCAATCTACAGTATCTCCTCTCTCTCACTGTTTTGAATTCTCGAGAAAAATCTGTTGGAAACGAAGAGGAAATGGACATTTCGGCTGCATTGGCTCGTCCAGGG</canonical>
            <polymorphic>GACGGAAAGTCGGATGGTCTCTACGGAAACAAGAAAGACTGCTCCGCAATTCTTCAGGTATCATTTTAAATTAAATATACAGTGACTTAATTTATGTTTTCAGTGCTTCGGAGGAGAACTGTTCGAGCACGCATCTTGTCCATCAAATCTCGCTTTCAACGAGTTGACAGCCAAATGCGATTACCCACAGAAAGTCAACGGATGCGAGAATCACGGAAGAACAGAGGGAGTGTGCTCCGAGCACGGAGCCTTCATCGCCGACGTCAACAACTGCTCAGTATTCTATCGCTGTGTATGGGGACGTAAAGTCGTGATGAGATGCCCGTCAGGCACCGTCTTCAATCCAGCACTCTCGGTATGCGATTGGCCGAGCGCCGTTCCATCCTGCGGTGCCGCTCCACAAGCCGCCGGCGACAGCTCATACGGTACTTCTTCTTCGTACAACGATGATAACTCGGGATATTGATAAGTTGTTCTAAACACCCCACCCCATCCCACARGCTAATCTAATCTTATCTATGTACTAACTTGATTGCATTCCGATCCCTACCACAAGATCTATACCTCCAATTATTTAGCATCCATTCCCCCTAACTTTTCATGTTGTCATAATAATCTGATTTATTTGCATGCTCAACGATACCCTGAAGTTTTAAATTTTGTTAAATAAATCGGCGAGCACAGACATTAGAATATCGAACAGAACTTCGAAAAGGAGAAGAAAAAGACACACACCGCCCAGCCCCAACCACATTCCTGCGCGCAAAACTTGCACTTTTTTTCGGACCTCTCTGAGTTTTCAGTGTTGTTTTCGAAATCGCTTCATTTCGATCAATCGACCATTTCAGAAGAGAGAAACGATTTCGAAAGAAAAAGAGATGGAGAGAAAAACAGTGGCAATCTACAGTATCTCCTCTCTCTCACTGTTTTGAATTCTCGAGAAAAATCTGTTGGAAACGAAGAGGAAATGGACATTTCGGCTGCATTGGCTCGTCCAGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>241 238 170 119 84 78 37 13 11 9</canonical_bands>
                <polymorphic_bands>325 238 170 119 78 37 13 11 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACAGCTCATACGGTACTTCTT</pcr_primer_p1>
		<pcr_primer_p2>AATTTAAAACTTCAGGGTATCGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GACAGCTCATACGGTACTTCTTCTTCGTACAACGATGATAACTCGGGATATTGATAAGTTGTTCTAAACACCCCACCCCATCCCACAGGCTAATCTAATCTTATCTATGTACTAACTTGATTGCATTCCGATCCCTACCACAAGATCTATACCTCCAATTATTTAGCATCCATTCCCCCTAACTTTTCATGTTGTCATAATAATCTGATTTATTTGCATGCTCAACGATACCCTGAAGTTTTAAATT</canonical_amplicon>
		<polymorphic_amplicon>GACAGCTCATACGGTACTTCTTCTTCGTACAACGATGATAACTCGGGATATTGATAAGTTGTTCTAAACACCCCACCCCATCCCACARGCTAATCTAATCTTATCTATGTACTAACTTGATTGCATTCCGATCCCTACCACAAGATCTATACCTCCAATTATTTAGCATCCATTCCCCCTAACTTTTCATGTTGTCATAATAATCTGATTTATTTGCATGCTCAACGATACCCTGAAGTTTTAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32834</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>470138</contig_pos>
        <strand></strand>
        <context>TTGGCTCGTC[C/A]RGGGGGGGGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATCTGTTGGAAACGAAGAGGAAATGGACATTTCGGCTGCATTGGCTCGTC</left_flank>
        <right_flank>AGGGGGGGGGGGGGGGCGAAATTGCACCCGCGTTCAAATTTCACCGTTTC</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGGCTAATCTAATCTTATCTATGTACTAACTTGATTGCATTCCGATCCCTACCACAAGATCTATACCTCCAATTATTTAGCATCCATTCCCCCTAACTTTTCATGTTGTCATAATAATCTGATTTATTTGCATGCTCAACGATACCCTGAAGTTTTAAATTTTGTTAAATAAATCGGCGAGCACAGACATTAGAATATCGAACAGAACTTCGAAAAGGAGAAGAAAAAGACACACACCGCCCAGCCCCAACCACATTCCTGCGCGCAAAACTTGCACTTTTTTTCGGACCTCTCTGAGTTTTCAGTGTTGTTTTCGAAATCGCTTCATTTCGATCAATCGACCATTTCAGAAGAGAGAAACGATTTCGAAAGAAAAAGAGATGGAGAGAAAAACAGTGGCAATCTACAGTATCTCCTCTCTCTCACTGTTTTGAATTCTCGAGAAAAATCTGTTGGAAACGAAGAGGAAATGGACATTTCGGCTGCATTGGCTCGTCCAGGGGGGGGGGGGGGGCGAAATTGCACCCGCGTTCAAATTTCACCGTTTCTGCAACCAACTATCCTTTTTCTTTGTCTCTGACAATTTGCAATCATTTTCAGTCAATTTCTTTCAGAAATTTTCAGAAAAATGTTTAAATTTAATTTTTCCGTATTTTTTTCGCAAAAATTCCGATTTTGTGTTTTCAGACACAAGTAGAGAATTTGCTCAAACTTTGGTCGTTGGTACTCTCAGACAGGTTGCTCTCGATGTCACAAATAAGTGATTTCTTTCGAAACTTCAATAATCGTAGTTCATATTCTAGTGTTGTCTCCTGAAGTTTTCGAGAACATCTAGAACTATTTTTCGAATTGTATCAAAAATAATAGTTTCACTTCCCTTGATTCGAAAATTTCAAAACGTGTTTTGAAAAAAAACGTGAAGTTAAGCGTTGTTGAGTCGCTACTCACCGAAAAGCCGTGACGCGACAGCGCAAAAAAAATTGGCGCGCTTTCCAATT</canonical>
            <polymorphic>ACAGGCTAATCTAATCTTATCTATGTACTAACTTGATTGCATTCCGATCCCTACCACAAGATCTATACCTCCAATTATTTAGCATCCATTCCCCCTAACTTTTCATGTTGTCATAATAATCTGATTTATTTGCATGCTCAACGATACCCTGAAGTTTTAAATTTTGTTAAATAAATCGGCGAGCACAGACATTAGAATATCGAACAGAACTTCGAAAAGGAGAAGAAAAAGACACACACCGCCCAGCCCCAACCACATTCCTGCGCGCAAAACTTGCACTTTTTTTCGGACCTCTCTGAGTTTTCAGTGTTGTTTTCGAAATCGCTTCATTTCGATCAATCGACCATTTCAGAAGAGAGAAACGATTTCGAAAGAAAAAGAGATGGAGAGAAAAACAGTGGCAATCTACAGTATCTCCTCTCTCTCACTGTTTTGAATTCTCGAGAAAAATCTGTTGGAAACGAAGAGGAAATGGACATTTCGGCTGCATTGGCTCGTCMAGGGGGGGGGGGGGGGCGAAATTGCACCCGCGTTCAAATTTCACCGTTTCTGCAACCAACTATCCTTTTTCTTTGTCTCTGACAATTTGCAATCATTTTCAGTCAATTTCTTTCAGAAATTTTCAGAAAAATGTTTAAATTTAATTTTTCCGTATTTTTTTCGCAAAAATTCCGATTTTGTGTTTTCAGACACAAGTAGAGAATTTGCTCAAACTTTGGTCGTTGGTACTCTCAGACAGGTTGCTCTCGATGTCACAAATAAGTGATTTCTTTCGAAACTTCAATAATCGTAGTTCATATTCTAGTGTTGTCTCCTGAAGTTTTCGAGAACATCTAGAACTATTTTTCGAATTGTATCAAAAATAATAGTTTCACTTCCCTTGATTCGAAAATTTCAAAACGTGTTTTGAAAAAAAACGTGAAGTTAAGCGTTGTTGAGTCGCTACTCACCGAAAAGCCGTGACGCGACAGCGCAAAAAAAATTGGCGCGCTTTCCAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGAAAAAGAGATGGAGAGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTCTGAAAGAAATTGACTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAGAAAAAGAGATGGAGAGAAAAACAGTGGCAATCTACAGTATCTCCTCTCTCTCACTGTTTTGAATTCTCGAGAAAAATCTGTTGGAAACGAAGAGGAAATGGACATTTCGGCTGCATTGGCTCGTCCAGGGGGGGGGGGGGGGCGAAATTGCACCCGCGTTCAAATTTCACCGTTTCTGCAACCAACTATCCTTTTTCTTTGTCTCTGACAATTTGCAATCATTTTCAGTCAATTTCTTTCAGAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAGAAAAAGAGATGGAGAGAAAAACAGTGGCAATCTACAGTATCTCCTCTCTCTCACTGTTTTGAATTCTCGAGAAAAATCTGTTGGAAACGAAGAGGAAATGGACATTTCGGCTGCATTGGCTCGTCMAGGGGGGGGGGGGGGGCGAAATTGCACCCGCGTTCAAATTTCACCGTTTCTGCAACCAACTATCCTTTTTCTTTGTCTCTGACAATTTGCAATCATTTTCAGTCAATTTCTTTCAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32835</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>470139</contig_pos>
        <strand></strand>
        <context>TGGCTCGTCM[A/G]GGGGGGGGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGTTGGAAACGAAGAGGAAATGGACATTTCGGCTGCATTGGCTCGTCC</left_flank>
        <right_flank>GGGGGGGGGGGGGGGCGAAATTGCACCCGCGTTCAAATTTCACCGTTTCT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGGCTAATCTAATCTTATCTATGTACTAACTTGATTGCATTCCGATCCCTACCACAAGATCTATACCTCCAATTATTTAGCATCCATTCCCCCTAACTTTTCATGTTGTCATAATAATCTGATTTATTTGCATGCTCAACGATACCCTGAAGTTTTAAATTTTGTTAAATAAATCGGCGAGCACAGACATTAGAATATCGAACAGAACTTCGAAAAGGAGAAGAAAAAGACACACACCGCCCAGCCCCAACCACATTCCTGCGCGCAAAACTTGCACTTTTTTTCGGACCTCTCTGAGTTTTCAGTGTTGTTTTCGAAATCGCTTCATTTCGATCAATCGACCATTTCAGAAGAGAGAAACGATTTCGAAAGAAAAAGAGATGGAGAGAAAAACAGTGGCAATCTACAGTATCTCCTCTCTCTCACTGTTTTGAATTCTCGAGAAAAATCTGTTGGAAACGAAGAGGAAATGGACATTTCGGCTGCATTGGCTCGTCCAGGGGGGGGGGGGGGGCGAAATTGCACCCGCGTTCAAATTTCACCGTTTCTGCAACCAACTATCCTTTTTCTTTGTCTCTGACAATTTGCAATCATTTTCAGTCAATTTCTTTCAGAAATTTTCAGAAAAATGTTTAAATTTAATTTTTCCGTATTTTTTTCGCAAAAATTCCGATTTTGTGTTTTCAGACACAAGTAGAGAATTTGCTCAAACTTTGGTCGTTGGTACTCTCAGACAGGTTGCTCTCGATGTCACAAATAAGTGATTTCTTTCGAAACTTCAATAATCGTAGTTCATATTCTAGTGTTGTCTCCTGAAGTTTTCGAGAACATCTAGAACTATTTTTCGAATTGTATCAAAAATAATAGTTTCACTTCCCTTGATTCGAAAATTTCAAAACGTGTTTTGAAAAAAAACGTGAAGTTAAGCGTTGTTGAGTCGCTACTCACCGAAAAGCCGTGACGCGACAGCGCAAAAAAAATTGGCGCGCTTTCCAATTT</canonical>
            <polymorphic>CAGGCTAATCTAATCTTATCTATGTACTAACTTGATTGCATTCCGATCCCTACCACAAGATCTATACCTCCAATTATTTAGCATCCATTCCCCCTAACTTTTCATGTTGTCATAATAATCTGATTTATTTGCATGCTCAACGATACCCTGAAGTTTTAAATTTTGTTAAATAAATCGGCGAGCACAGACATTAGAATATCGAACAGAACTTCGAAAAGGAGAAGAAAAAGACACACACCGCCCAGCCCCAACCACATTCCTGCGCGCAAAACTTGCACTTTTTTTCGGACCTCTCTGAGTTTTCAGTGTTGTTTTCGAAATCGCTTCATTTCGATCAATCGACCATTTCAGAAGAGAGAAACGATTTCGAAAGAAAAAGAGATGGAGAGAAAAACAGTGGCAATCTACAGTATCTCCTCTCTCTCACTGTTTTGAATTCTCGAGAAAAATCTGTTGGAAACGAAGAGGAAATGGACATTTCGGCTGCATTGGCTCGTCCRGGGGGGGGGGGGGGGCGAAATTGCACCCGCGTTCAAATTTCACCGTTTCTGCAACCAACTATCCTTTTTCTTTGTCTCTGACAATTTGCAATCATTTTCAGTCAATTTCTTTCAGAAATTTTCAGAAAAATGTTTAAATTTAATTTTTCCGTATTTTTTTCGCAAAAATTCCGATTTTGTGTTTTCAGACACAAGTAGAGAATTTGCTCAAACTTTGGTCGTTGGTACTCTCAGACAGGTTGCTCTCGATGTCACAAATAAGTGATTTCTTTCGAAACTTCAATAATCGTAGTTCATATTCTAGTGTTGTCTCCTGAAGTTTTCGAGAACATCTAGAACTATTTTTCGAATTGTATCAAAAATAATAGTTTCACTTCCCTTGATTCGAAAATTTCAAAACGTGTTTTGAAAAAAAACGTGAAGTTAAGCGTTGTTGAGTCGCTACTCACCGAAAAGCCGTGACGCGACAGCGCAAAAAAAATTGGCGCGCTTTCCAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGAAAAAGAGATGGAGAGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTCTGAAAGAAATTGACTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAGAAAAAGAGATGGAGAGAAAAACAGTGGCAATCTACAGTATCTCCTCTCTCTCACTGTTTTGAATTCTCGAGAAAAATCTGTTGGAAACGAAGAGGAAATGGACATTTCGGCTGCATTGGCTCGTCCAGGGGGGGGGGGGGGGCGAAATTGCACCCGCGTTCAAATTTCACCGTTTCTGCAACCAACTATCCTTTTTCTTTGTCTCTGACAATTTGCAATCATTTTCAGTCAATTTCTTTCAGAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAGAAAAAGAGATGGAGAGAAAAACAGTGGCAATCTACAGTATCTCCTCTCTCTCACTGTTTTGAATTCTCGAGAAAAATCTGTTGGAAACGAAGAGGAAATGGACATTTCGGCTGCATTGGCTCGTCCRGGGGGGGGGGGGGGGCGAAATTGCACCCGCGTTCAAATTTCACCGTTTCTGCAACCAACTATCCTTTTTCTTTGTCTCTGACAATTTGCAATCATTTTCAGTCAATTTCTTTCAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32836</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>475755</contig_pos>
        <strand>+</strand>
        <context>GCTCCTACCT[A/G]ATATCTCTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGATTTTCAGCGACTTTCTCCGTGGTTGTGCTCGCTTGGCGCTCCTACCT</left_flank>
        <right_flank>ATATCTCTGCCAATGTGGAAACTTTCGCCGAGTTAATTGATACCTGGTGT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTGGCTCCAAGCTCCTGGAGTGATTCTTCTCGAAGATATCGATGCTGCAAACGCTGATGTGGTCTCAAAGATTGTCGACATTGCTACTTATCGTCAAACAGATGCTTCCAACTCTGAAAAGAATTTGGATTTTCACAATGAAGTTCGAATTATCGCCACTATGTCGTTAGTTTTATAAGACCCCTGTACTAAGATAATATTTCTGTGTTTTCCAGTGGAAAAGGCAAAAAAACTGCCGTTTTGGACGGTGTGCCAGTCCGTATTCGGGTCGAATCCTTATCCGATGACGAGCTCAAGAGATTAGCTTCTAAATCCTATCCCAGAATTGCTCATCTTTCTCGGACTCTTATTTCCACATTCCGAAAGATAGAAAACGTTCCTGGTACTGGAAACTCGAGACAACTAACATCGACGTAAGGTAAATATTGGGTTACACATTCAATTTTTCGATTTTCAGCGACTTTCTCCGTGGTTGTGCTCGCTTGGCGCTCCTACCTAATATCTCTGCCAATGTGGAAACTTTCGCCGAGTTAATTGATACCTGGTGTCTTGCCGATCCCAGACAGAGGGCTAATCAATTATGCAACATCGTAAGTCGTCCATTCTGAAGAGTTATTAATTTTTATATTCATTATAGGTTGCCTCATCGTTGAATGTGAATCCGGATCGTGTGAATACACATCTCTCTGTTCGACAGCCAGAAGTGAAATATGACGAGCACGTTGTTTCAGTTGGTAGATCAAAAATTCCAAGGAAAATGAGCATGATCAAAACGGGAAGACATCGACTAGGTCACACTAGAGACGTTGTCCAACTGATGGAACGAATTGGTGTCTGTGTGTCTCATAATGAGCCGCTTCTACTAGTCGGAGAAACTGGTGTTGGTAAAACGTCCATCGTTCAGGCTGTTGCCGATCTCATTGGTGTCACATTGGATGTTGTGAACGTAAGCCCGACTTCTGATTCGGATGAACTAATTCAAGGGTACGAAATTTGCC</canonical>
            <polymorphic>AAGTGGCTCCAAGCTCCTGGAGTGATTCTTCTCGAAGATATCGATGCTGCAAACGCTGATGTGGTCTCAAAGATTGTCGACATTGCTACTTATCGTCAAACAGATGCTTCCAACTCTGAAAAGAATTTGGATTTTCACAATGAAGTTCGAATTATCGCCACTATGTCGTTAGTTTTATAAGACCCCTGTACTAAGATAATATTTCTGTGTTTTCCAGTGGAAAAGGCAAAAAAACTGCCGTTTTGGACGGTGTGCCAGTCCGTATTCGGGTCGAATCCTTATCCGATGACGAGCTCAAGAGATTAGCTTCTAAATCCTATCCCAGAATTGCTCATCTTTCTCGGACTCTTATTTCCACATTCCGAAAGATAGAAAACGTTCCTGGTACTGGAAACTCGAGACAACTAACATCGACGTAAGGTAAATATTGGGTTACACATTCAATTTTTCGATTTTCAGCGACTTTCTCCGTGGTTGTGCTCGCTTGGCGCTCCTACCTRATATCTCTGCCAATGTGGAAACTTTCGCCGAGTTAATTGATACCTGGTGTCTTGCCGATCCCAGACAGAGGGCTAATCAATTATGCAACATCGTAAGTCGTCCATTCTGAAGAGTTATTAATTTTTATATTCATTATAGGTTGCCTCATCGTTGAATGTGAATCCGGATCGTGTGAATACACATCTCTCTGTTCGACAGCCAGAAGTGAAATATGACGAGCACGTTGTTTCAGTTGGTAGATCAAAAATTCCAAGGAAAATGAGCATGATCAAAACGGGAAGACATCGACTAGGTCACACTAGAGACGTTGTCCAACTGATGGAACGAATTGGTGTCTGTGTGTCTCATAATGAGCCGCTTCTACTAGTCGGAGAAACTGGTGTTGGTAAAACGTCCATCGTTCAGGCTGTTGCCGATCTCATTGGTGTCACATTGGATGTTGTGAACGTAAGCCCGACTTCTGATTCGGATGAACTAATTCAAGGGTACGAAATTTGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTAACATCGACGTAAGGTAAA</pcr_primer_p1>
		<pcr_primer_p2>GATGAGGCAACCTATAATGAATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AACTAACATCGACGTAAGGTAAATATTGGGTTACACATTCAATTTTTCGATTTTCAGCGACTTTCTCCGTGGTTGTGCTCGCTTGGCGCTCCTACCTAATATCTCTGCCAATGTGGAAACTTTCGCCGAGTTAATTGATACCTGGTGTCTTGCCGATCCCAGACAGAGGGCTAATCAATTATGCAACATCGTAAGTCGTCCATTCTGAAGAGTTATTAATTTTTATATTCATTATAGGTTGCCTCATC</canonical_amplicon>
		<polymorphic_amplicon>AACTAACATCGACGTAAGGTAAATATTGGGTTACACATTCAATTTTTCGATTTTCAGCGACTTTCTCCGTGGTTGTGCTCGCTTGGCGCTCCTACCTRATATCTCTGCCAATGTGGAAACTTTCGCCGAGTTAATTGATACCTGGTGTCTTGCCGATCCCAGACAGAGGGCTAATCAATTATGCAACATCGTAAGTCGTCCATTCTGAAGAGTTATTAATTTTTATATTCATTATAGGTTGCCTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32837</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>550971</contig_pos>
        <strand>+</strand>
        <context>TCAGCCATTT[C/T]GGGCCGCTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGATCCCAATAATTTTCATATACATGTTTTTAATTTGTTTTCAGCCATTT</left_flank>
        <right_flank>GGGCCGCTTTATTTGGACCACTATCCGTTTTTGAGCCGTTTCCAGGCATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGACGTACCTGAAGTCGAAACTGTTGGTAGAAACGGAGACTGAAGACTCCAACGACGTCTCCGATGTGTTGCCACGTGCTCCACCTCGACTGTGTAGCCATCTGAAATATTCTTGTTCTCCATATAGGCATAAATCATATTTTTCTCGACTTCAGAACTTAAGGGAACTATAACGGACTAGAATTTACAAAAAGACTTCTGAACATAAAATTACAAAAAGCAGTTCTACAAAACGTAGTTTTACTTGAGTCGACTTGATTTTAGGACACTTGTATTCCCCTTACACCTATCGTATTACCTTTAATAGAACACCATTTTTATATATGTATATATCAAACTCAAACTTCGAGTATGACTGTGCCGTTCTGTTAGATGAGATACAATTTTTAGACCATTTTCATTCGAAAAGTTGGAAAGTCAAATACAAGCACTACACTGTAAACGAAAGGATCCCAATAATTTTCATATACATGTTTTTAATTTGTTTTCAGCCATTTTGGGCCGCTTTATTTGGACCACTATCCGTTTTTGAGCCGTTTCCAGGCATTTCTAAATTCATTTCAAACATTTTTAAACTTTTTAAAGCTATTCCGGTCCGAAAATGTCTAGGAAAAGGGTGGATAGCTACTCAGTAAGCAAGGCTGCGATTTAAAAAATAAAAACATGCAGAATAGTTTTTAGCAAAATTAACTGAAAGTAATTCATATCAGGTTGTTATTGTTATTATTCAGTTTTAGCGTTTGCGACGTCCTATCAGCTGGTTTCAAATGCGACTTCGAAGAAGTTTCTTACTGGAATATTTTTTCAGTATCGAAAATTTGCAAGCCTTCCTACTCAAGCCCAACTATAAGTGGTCGAAAAAAAAACATCAGCTCTGGATTTTCCGGAAACATTGGTTCCTTTTTTTCAATTTTAAATACACCTCCGCTCAAAATTCATCACAATTTGCATTCTAATTTCTGTTCGTTCGAGAACTTTGAAAGAATTCCGGATTCGCA</canonical>
            <polymorphic>GAAGACGTACCTGAAGTCGAAACTGTTGGTAGAAACGGAGACTGAAGACTCCAACGACGTCTCCGATGTGTTGCCACGTGCTCCACCTCGACTGTGTAGCCATCTGAAATATTCTTGTTCTCCATATAGGCATAAATCATATTTTTCTCGACTTCAGAACTTAAGGGAACTATAACGGACTAGAATTTACAAAAAGACTTCTGAACATAAAATTACAAAAAGCAGTTCTACAAAACGTAGTTTTACTTGAGTCGACTTGATTTTAGGACACTTGTATTCCCCTTACACCTATCGTATTACCTTTAATAGAACACCATTTTTATATATGTATATATCAAACTCAAACTTCGAGTATGACTGTGCCGTTCTGTTAGATGAGATACAATTTTTAGACCATTTTCATTCGAAAAGTTGGAAAGTCAAATACAAGCACTACACTGTAAACGAAAGGATCCCAATAATTTTCATATACATGTTTTTAATTTGTTTTCAGCCATTTYGGGCCGCTTTATTTGGACCACTATCCGTTTTTGAGCCGTTTCCAGGCATTTCTAAATTCATTTCAAACATTTTTAAACTTTTTAAAGCTATTCCGGTCCGAAAATGTCTAGGAAAAGGGTGGATAGCTACTCAGTAAGCAAGGCTGCGATTTAAAAAATAAAAACATGCAGAATAGTTTTTAGCAAAATTAACTGAAAGTAATTCATATCAGGTTGTTATTGTTATTATTCAGTTTTAGCGTTTGCGACGTCCTATCAGCTGGTTTCAAATGCGACTTCGAAGAAGTTTCTTACTGGAATATTTTTTCAGTATCGAAAATTTGCAAGCCTTCCTACTCAAGCCCAACTATAAGTGGTCGAAAAAAAAACATCAGCTCTGGATTTTCCGGAAACATTGGTTCCTTTTTTTCAATTTTAAATACACCTCCGCTCAAAATTCATCACAATTTGCATTCTAATTTCTGTTCGTTCGAGAACTTTGAAAGAATTCCGGATTCGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTACACTGTAAACGAAAGGAT</pcr_primer_p1>
		<pcr_primer_p2>AAACTATTCTGCATGTTTTTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CACTACACTGTAAACGAAAGGATCCCAATAATTTTCATATACATGTTTTTAATTTGTTTTCAGCCATTTTGGGCCGCTTTATTTGGACCACTATCCGTTTTTGAGCCGTTTCCAGGCATTTCTAAATTCATTTCAAACATTTTTAAACTTTTTAAAGCTATTCCGGTCCGAAAATGTCTAGGAAAAGGGTGGATAGCTACTCAGTAAGCAAGGCTGCGATTTAAAAAATAAAAACATGCAGAATAGTTT</canonical_amplicon>
		<polymorphic_amplicon>CACTACACTGTAAACGAAAGGATCCCAATAATTTTCATATACATGTTTTTAATTTGTTTTCAGCCATTTYGGGCCGCTTTATTTGGACCACTATCCGTTTTTGAGCCGTTTCCAGGCATTTCTAAATTCATTTCAAACATTTTTAAACTTTTTAAAGCTATTCCGGTCCGAAAATGTCTAGGAAAAGGGTGGATAGCTACTCAGTAAGCAAGGCTGCGATTTAAAAAATAAAAACATGCAGAATAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32838</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>598335</contig_pos>
        <strand></strand>
        <context>aaaactaggt[A/C]acaagacatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATATGTTTTCTGTTTTTGCGAAACGGCGGTGAGCTTCGAGAAAACTAGGT</left_flank>
        <right_flank>ACAAGACATTTTAGTGGTGTTTGAACCTGTTGATTTTGCATTGAAAACCG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTGGGTGGCACATTCAACCGAACGCTGAAGACTACCTGAAATCGAAGATTTCCTTACATTTTCTGGATTTCAAAGTATTTACCTTATGCTGAATATCCCAGTAGACACAACACCCATGATAAAAAATTACCATGAATACATCCAAATATTCAACGAGTGCAAATAATTCGTATGCTGAAACTTACGATTTTTGTTGGGATAGAGATGGATTCCTTAAAATTGGACCAACCCCAAGTGAAACAAGCTTTCCAGTAGAGCGCATAAAATGTTGCAATTGCAGGTGCAGACAGAAAATAGCAGATACTTATTCCAATTTTCACATGATACGAGATTCGTCCCTGAAAATAAGCTATTTTAAAATACTGACTAGGGAACTATCTGCGCGGGATTCCAAGTTACACTTCGTGACCTATATCATTAGAAATCCCATAAAATTCTGCTTCGGAATATGTTTTCTGTTTTTGCGAAACGGCGGTGAGCTTCGAGAAAACTAGGTAACAAGACATTTTAGTGGTGTTTGAACCTGTTGATTTTGCATTGAAAACCGTCACGTCGATTTTAAATGAAAAAGCAACATGTTTAAACAGCACTAAAATGTCTTGTAACTTAATTTTCTCGANNNNNNNNNNGCAGATAGCTCCCTAGTGAGTTTTGGCATTTGTCCTTCTTACGTAGGGATTCAGAAAGTACAAAGATTGAGAATGGCAAACTGTGTTAGAAATGAAGAAAAGTAGTGCGACAACTCCAAAACTGTAGAAAAAGCAAATATGCCAAACTGGAAAAAAAGCAGGATAAAATTGTATACGACCTTTCTCAGAATCTCACTTCCATGTTCCTTTTCTCCAATCGCTGACAATCCACTGAGAAGAAAAAGTTCAGTGACACCGAAAACAAGATACAGATGCCTATGCATTTTATACCAGAAACGTTTTTTGTTGCTTTTGCTTTCCAGACGTCCATATCGGACCCCTTGAACAATTTTTTTTGGTTTGATGTC</canonical>
            <polymorphic>TTCTTGGGTGGCACATTCAACCGAACGCTGAAGACTACCTGAAATCGAAGATTTCCTTACATTTTCTGGATTTCAAAGTATTTACCTTATGCTGAATATCCCAGTAGACACAACACCCATGATAAAAAATTACCATGAATACATCCAAATATTCAACGAGTGCAAATAATTCGTATGCTGAAACTTACGATTTTTGTTGGGATAGAGATGGATTCCTTAAAATTGGACCAACCCCAAGTGAAACAAGCTTTCCAGTAGAGCGCATAAAATGTTGCAATTGCAGGTGCAGACAGAAAATAGCAGATACTTATTCCAATTTTCACATGATACGAGATTCGTCCCTGAAAATAAGCTATTTTAAAATACTGACTAGGGAACTATCTGCGCGGGATTCCAAGTTACACTTCGTGACCTATATCATTAGAAATCCCATAAAATTCTGCTTCGGAATATGTTTTCTGTTTTTGCGAAACGGCGGTGAGCTTCGAGAAAACTAGGTMACAAGACATTTTAGTGGTGTTTGAACCTGTTGATTTTGCATTGAAAACCGTCACGTCGATTTTAAATGAAAAAGCAACATGTTTAAACAGCACTAAAATGTCTTGTAACTTAATTTTCTCGANNNNNNNNNNGCAGATAGCTCCCTAGTGAGTTTTGGCATTTGTCCTTCTTACGTAGGGATTCAGAAAGTACAAAGATTGAGAATGGCAAACTGTGTTAGAAATGAAGAAAAGTAGTGCGACAACTCCAAAACTGTAGAAAAAGCAAATATGCCAAACTGGAAAAAAAGCAGGATAAAATTGTATACGACCTTTCTCAGAATCTCACTTCCATGTTCCTTTTCTCCAATCGCTGACAATCCACTGAGAAGAAAAAGTTCAGTGACACCGAAAACAAGATACAGATGCCTATGCATTTTATACCAGAAACGTTTTTTGTTGCTTTTGCTTTCCAGACGTCCATATCGGACCCCTTGAACAATTTTTTTTGGTTTGATGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGTCCCTGAAAATAAGCTA</pcr_primer_p1>
		<pcr_primer_p2>AAACTCACTAGGGAGCTATCTG</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>TCGTCCCTGAAAATAAGCTATTTTAAAATACTGACTAGGGAACTATCTGCGCGGGATTCCAAGTTACACTTCGTGACCTATATCATTAGAAATCCCATAAAATTCTGCTTCGGAATATGTTTTCTGTTTTTGCGAAACGGCGGTGAGCTTCGAGAAAACTAGGTAACAAGACATTTTAGTGGTGTTTGAACCTGTTGATTTTGCATTGAAAACCGTCACGTCGATTTTAAATGAAAAAGCAACATGTTTAAACAGCACTAAAATGTCTTGTAACTTAATTTTCTCGANNNNNNNNNNGCAGATAGCTCCCTAGTGAGTTT</canonical_amplicon>
		<polymorphic_amplicon>TCGTCCCTGAAAATAAGCTATTTTAAAATACTGACTAGGGAACTATCTGCGCGGGATTCCAAGTTACACTTCGTGACCTATATCATTAGAAATCCCATAAAATTCTGCTTCGGAATATGTTTTCTGTTTTTGCGAAACGGCGGTGAGCTTCGAGAAAACTAGGTMACAAGACATTTTAGTGGTGTTTGAACCTGTTGATTTTGCATTGAAAACCGTCACGTCGATTTTAAATGAAAAAGCAACATGTTTAAACAGCACTAAAATGTCTTGTAACTTAATTTTCTCGANNNNNNNNNNGCAGATAGCTCCCTAGTGAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32839</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>598445</contig_pos>
        <strand></strand>
        <context>gtcttgtaac[T/C]taattttctc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTAAATGAAAAAGCAACATGTTTAAACAGCACTAAAATGTCTTGTAAC</left_flank>
        <right_flank>TAATTTTCTCGANNNNNNNNNNGCAGATAGCTCCCTAGTGAGTTTTGGCA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACACCCATGATAAAAAATTACCATGAATACATCCAAATATTCAACGAGTGCAAATAATTCGTATGCTGAAACTTACGATTTTTGTTGGGATAGAGATGGATTCCTTAAAATTGGACCAACCCCAAGTGAAACAAGCTTTCCAGTAGAGCGCATAAAATGTTGCAATTGCAGGTGCAGACAGAAAATAGCAGATACTTATTCCAATTTTCACATGATACGAGATTCGTCCCTGAAAATAAGCTATTTTAAAATACTGACTAGGGAACTATCTGCGCGGGATTCCAAGTTACACTTCGTGACCTATATCATTAGAAATCCCATAAAATTCTGCTTCGGAATATGTTTTCTGTTTTTGCGAAACGGCGGTGAGCTTCGAGAAAACTAGGTAACAAGACATTTTAGTGGTGTTTGAACCTGTTGATTTTGCATTGAAAACCGTCACGTCGATTTTAAATGAAAAAGCAACATGTTTAAACAGCACTAAAATGTCTTGTAACTTAATTTTCTCGANNNNNNNNNNGCAGATAGCTCCCTAGTGAGTTTTGGCATTTGTCCTTCTTACGTAGGGATTCAGAAAGTACAAAGATTGAGAATGGCAAACTGTGTTAGAAATGAAGAAAAGTAGTGCGACAACTCCAAAACTGTAGAAAAAGCAAATATGCCAAACTGGAAAAAAAGCAGGATAAAATTGTATACGACCTTTCTCAGAATCTCACTTCCATGTTCCTTTTCTCCAATCGCTGACAATCCACTGAGAAGAAAAAGTTCAGTGACACCGAAAACAAGATACAGATGCCTATGCATTTTATACCAGAAACGTTTTTTGTTGCTTTTGCTTTCCAGACGTCCATATCGGACCCCTTGAACAATTTTTTTTGGTTTGATGTCGTTTTATAGCAAACTCACAGCCAACTGACAACTCAAGAAGACGAAATGGAATATGAAATAGAATGCAAAGTTGCCAGACAAGTCCTTCTAGAGTGAGGTTGATGATTCGG</canonical>
            <polymorphic>CAACACCCATGATAAAAAATTACCATGAATACATCCAAATATTCAACGAGTGCAAATAATTCGTATGCTGAAACTTACGATTTTTGTTGGGATAGAGATGGATTCCTTAAAATTGGACCAACCCCAAGTGAAACAAGCTTTCCAGTAGAGCGCATAAAATGTTGCAATTGCAGGTGCAGACAGAAAATAGCAGATACTTATTCCAATTTTCACATGATACGAGATTCGTCCCTGAAAATAAGCTATTTTAAAATACTGACTAGGGAACTATCTGCGCGGGATTCCAAGTTACACTTCGTGACCTATATCATTAGAAATCCCATAAAATTCTGCTTCGGAATATGTTTTCTGTTTTTGCGAAACGGCGGTGAGCTTCGAGAAAACTAGGTAACAAGACATTTTAGTGGTGTTTGAACCTGTTGATTTTGCATTGAAAACCGTCACGTCGATTTTAAATGAAAAAGCAACATGTTTAAACAGCACTAAAATGTCTTGTAACYTAATTTTCTCGANNNNNNNNNNGCAGATAGCTCCCTAGTGAGTTTTGGCATTTGTCCTTCTTACGTAGGGATTCAGAAAGTACAAAGATTGAGAATGGCAAACTGTGTTAGAAATGAAGAAAAGTAGTGCGACAACTCCAAAACTGTAGAAAAAGCAAATATGCCAAACTGGAAAAAAAGCAGGATAAAATTGTATACGACCTTTCTCAGAATCTCACTTCCATGTTCCTTTTCTCCAATCGCTGACAATCCACTGAGAAGAAAAAGTTCAGTGACACCGAAAACAAGATACAGATGCCTATGCATTTTATACCAGAAACGTTTTTTGTTGCTTTTGCTTTCCAGACGTCCATATCGGACCCCTTGAACAATTTTTTTTGGTTTGATGTCGTTTTATAGCAAACTCACAGCCAACTGACAACTCAAGAAGACGAAATGGAATATGAAATAGAATGCAAAGTTGCCAGACAAGTCCTTCTAGAGTGAGGTTGATGATTCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>500 204 141 107 27 21</canonical_bands>
                <polymorphic_bands>527 204 141 107 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGTCCCTGAAAATAAGCTA</pcr_primer_p1>
		<pcr_primer_p2>GACAAATGCCAAAACTCACTA</pcr_primer_p2>
		<pcr_amplicon_size>331</pcr_amplicon_size>
		<canonical_amplicon>TCGTCCCTGAAAATAAGCTATTTTAAAATACTGACTAGGGAACTATCTGCGCGGGATTCCAAGTTACACTTCGTGACCTATATCATTAGAAATCCCATAAAATTCTGCTTCGGAATATGTTTTCTGTTTTTGCGAAACGGCGGTGAGCTTCGAGAAAACTAGGTAACAAGACATTTTAGTGGTGTTTGAACCTGTTGATTTTGCATTGAAAACCGTCACGTCGATTTTAAATGAAAAAGCAACATGTTTAAACAGCACTAAAATGTCTTGTAACTTAATTTTCTCGANNNNNNNNNNGCAGATAGCTCCCTAGTGAGTTTTGGCATTTGTC</canonical_amplicon>
		<polymorphic_amplicon>TCGTCCCTGAAAATAAGCTATTTTAAAATACTGACTAGGGAACTATCTGCGCGGGATTCCAAGTTACACTTCGTGACCTATATCATTAGAAATCCCATAAAATTCTGCTTCGGAATATGTTTTCTGTTTTTGCGAAACGGCGGTGAGCTTCGAGAAAACTAGGTAACAAGACATTTTAGTGGTGTTTGAACCTGTTGATTTTGCATTGAAAACCGTCACGTCGATTTTAAATGAAAAAGCAACATGTTTAAACAGCACTAAAATGTCTTGTAACYTAATTTTCTCGANNNNNNNNNNGCAGATAGCTCCCTAGTGAGTTTTGGCATTTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32840</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>600384</contig_pos>
        <strand></strand>
        <context>atctatttat[A/T]ataaatagat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTGAACGATGAGCGAAAGAAAAAGCGCGCATTGATTTGATCTATTTAT</left_flank>
        <right_flank>ATAAATAGATCAAATCTGCGTCCACTTCAAAATTATAAAATTTCTTTTGG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGATTTTCTGTACGGGGCACTTCAATTAGAGGAAACCTTCAGCCTGATGGTACACTTGATCGTTTCGTATTTCCGCTGAAGAAGGCACTTCTATCAGACAGACTCTTCAATTTCAGGAGCCTTTCTAATACGCGTATTACGGTATCTCATAGTTTTTGTTTCATGCAGTTGTTTAACGATTTCAGAAGATTTTTCCCAAAAAAAGGCAAAATTCTGATCCTATCAAACCTTCGAGATGTGTCTGTTTAATGCGCATTACCAATGTTTCAAGTTCTTAGATAATCCTTCAAGGCTTATCATATTGTTCATCATTCTGATATATTTTTATGTCACCTGAAAATATTTTAGGATGTATCATGCTGTGTCAGGAAGCCTGGTCGAAAAACCCCAGCGAACCCCAAAATCTCGCTGAATTCGCTGCCGAGTCTCGCTGGCTGAGGATCAAAGTTTTGAACGATGAGCGAAAGAAAAAGCGCGCATTGATTTGATCTATTTATAATAAATAGATCAAATCTGCGTCCACTTCAAAATTATAAAATTTCTTTTGGCCTACGAGTTCGCCGGGGCGCGTTTTCCGGCCAGGCTTCCTGACACACCGTGATGTATGCCAAACTCCTTCTTGCTCCATCTTGCAAAACTATTGCTCCGCGCTGCGAGACAGACCAATTATTCTCGTGCAAACATTCCAGATTTCGGATGCCTGTCTACAAATCACTTTGCATATCCTGAAACTCATCTCAAGATCTTACCACGGATCCACCCCCGTTTTCTCTTTTCTTTCCATATTATTTTTTTCAGTCTCTCTATCTCTCCCCCTCTCTCTCTCATTCCAGGAAATGAGGAATGAGCAGGAAATTGTAGGCCGCGGAGGCGCCGTTTGAGGCGGGAAATGGAAAAACACGAAGACACGACGGGACGGGAGTACAATGCCAAAACGGAAAATGTTTTGATATTTGAAGCCAGAAGAAGATATTAACCTTATCCTTTTCTTTCAAAGT</canonical>
            <polymorphic>TCTGATTTTCTGTACGGGGCACTTCAATTAGAGGAAACCTTCAGCCTGATGGTACACTTGATCGTTTCGTATTTCCGCTGAAGAAGGCACTTCTATCAGACAGACTCTTCAATTTCAGGAGCCTTTCTAATACGCGTATTACGGTATCTCATAGTTTTTGTTTCATGCAGTTGTTTAACGATTTCAGAAGATTTTTCCCAAAAAAAGGCAAAATTCTGATCCTATCAAACCTTCGAGATGTGTCTGTTTAATGCGCATTACCAATGTTTCAAGTTCTTAGATAATCCTTCAAGGCTTATCATATTGTTCATCATTCTGATATATTTTTATGTCACCTGAAAATATTTTAGGATGTATCATGCTGTGTCAGGAAGCCTGGTCGAAAAACCCCAGCGAACCCCAAAATCTCGCTGAATTCGCTGCCGAGTCTCGCTGGCTGAGGATCAAAGTTTTGAACGATGAGCGAAAGAAAAAGCGCGCATTGATTTGATCTATTTATWATAAATAGATCAAATCTGCGTCCACTTCAAAATTATAAAATTTCTTTTGGCCTACGAGTTCGCCGGGGCGCGTTTTCCGGCCAGGCTTCCTGACACACCGTGATGTATGCCAAACTCCTTCTTGCTCCATCTTGCAAAACTATTGCTCCGCGCTGCGAGACAGACCAATTATTCTCGTGCAAACATTCCAGATTTCGGATGCCTGTCTACAAATCACTTTGCATATCCTGAAACTCATCTCAAGATCTTACCACGGATCCACCCCCGTTTTCTCTTTTCTTTCCATATTATTTTTTTCAGTCTCTCTATCTCTCCCCCTCTCTCTCTCATTCCAGGAAATGAGGAATGAGCAGGAAATTGTAGGCCGCGGAGGCGCCGTTTGAGGCGGGAAATGGAAAAACACGAAGACACGACGGGACGGGAGTACAATGCCAAAACGGAAAATGTTTTGATATTTGAAGCCAGAAGAAGATATTAACCTTATCCTTTTCTTTCAAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>498 465 37</canonical_bands>
                <polymorphic_bands>535 465</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTGATATATTTTTATGTCACCTG</pcr_primer_p1>
		<pcr_primer_p2>AAGGAGTTTGGCATACATCA</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>TTCTGATATATTTTTATGTCACCTGAAAATATTTTAGGATGTATCATGCTGTGTCAGGAAGCCTGGTCGAAAAACCCCAGCGAACCCCAAAATCTCGCTGAATTCGCTGCCGAGTCTCGCTGGCTGAGGATCAAAGTTTTGAACGATGAGCGAAAGAAAAAGCGCGCATTGATTTGATCTATTTATAATAAATAGATCAAATCTGCGTCCACTTCAAAATTATAAAATTTCTTTTGGCCTACGAGTTCGCCGGGGCGCGTTTTCCGGCCAGGCTTCCTGACACACCGTGATGTATGCCAAACTCCTT</canonical_amplicon>
		<polymorphic_amplicon>TTCTGATATATTTTTATGTCACCTGAAAATATTTTAGGATGTATCATGCTGTGTCAGGAAGCCTGGTCGAAAAACCCCAGCGAACCCCAAAATCTCGCTGAATTCGCTGCCGAGTCTCGCTGGCTGAGGATCAAAGTTTTGAACGATGAGCGAAAGAAAAAGCGCGCATTGATTTGATCTATTTATWATAAATAGATCAAATCTGCGTCCACTTCAAAATTATAAAATTTCTTTTGGCCTACGAGTTCGCCGGGGCGCGTTTTCCGGCCAGGCTTCCTGACACACCGTGATGTATGCCAAACTCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32841</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>600818</contig_pos>
        <strand>+</strand>
        <context>GTACAATGCC[A/G]AAACGGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGCGGGAAATGGAAAAACACGAAGACACGACGGGACGGGAGTACAATGCC</left_flank>
        <right_flank>AAACGGAAAATGTTTTGATATTTGAAGCCAGAAGAAGATATTAACCTTAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTGAGGATCAAAGTTTTGAACGATGAGCGAAAGAAAAAGCGCGCATTGATTTGATCTATTTATAATAAATAGATCAAATCTGCGTCCACTTCAAAATTATAAAATTTCTTTTGGCCTACGAGTTCGCCGGGGCGCGTTTTCCGGCCAGGCTTCCTGACACACCGTGATGTATGCCAAACTCCTTCTTGCTCCATCTTGCAAAACTATTGCTCCGCGCTGCGAGACAGACCAATTATTCTCGTGCAAACATTCCAGATTTCGGATGCCTGTCTACAAATCACTTTGCATATCCTGAAACTCATCTCAAGATCTTACCACGGATCCACCCCCGTTTTCTCTTTTCTTTCCATATTATTTTTTTCAGTCTCTCTATCTCTCCCCCTCTCTCTCTCATTCCAGGAAATGAGGAATGAGCAGGAAATTGTAGGCCGCGGAGGCGCCGTTTGAGGCGGGAAATGGAAAAACACGAAGACACGACGGGACGGGAGTACAATGCCAAAACGGAAAATGTTTTGATATTTGAAGCCAGAAGAAGATATTAACCTTATCCTTTTCTTTCAAAGTTTTGATATATCAATTGGTAACCTGAACTCAATTTATGAAATCGTATATTTTTCAAAGTCTGTTTTTTTTTGAACAACAACTTCCGAGGGATTATAAAATCCTTTCTAAGAGCAGAAAAAGTCTATTGAATGATCATATGAGACAATCAGAAAGTGGACAAAAATATAAAAACATATACGATGGTTTGTACATTTCATTATTAGTCGATTGGTCAGTTGAGAGATCCCGACATGTACTTGTTTTATCCAATACAAACTTTTCATATTTTCCTCATTTTCAAAAGAGCCCGAGTAAGTTCAAAGACCAATCGACTGGCATAATTTCCGTATTCCATGAGAATTTCTAGAACAAATCGTGAGAATCCAGAAGAAAATTTCCTTGCTGTACACGGAAACTCATAAAAAATGGGGAATTTTTCTTAGGACATGTCCTGG</canonical>
            <polymorphic>GGCTGAGGATCAAAGTTTTGAACGATGAGCGAAAGAAAAAGCGCGCATTGATTTGATCTATTTATAATAAATAGATCAAATCTGCGTCCACTTCAAAATTATAAAATTTCTTTTGGCCTACGAGTTCGCCGGGGCGCGTTTTCCGGCCAGGCTTCCTGACACACCGTGATGTATGCCAAACTCCTTCTTGCTCCATCTTGCAAAACTATTGCTCCGCGCTGCGAGACAGACCAATTATTCTCGTGCAAACATTCCAGATTTCGGATGCCTGTCTACAAATCACTTTGCATATCCTGAAACTCATCTCAAGATCTTACCACGGATCCACCCCCGTTTTCTCTTTTCTTTCCATATTATTTTTTTCAGTCTCTCTATCTCTCCCCCTCTCTCTCTCATTCCAGGAAATGAGGAATGAGCAGGAAATTGTAGGCCGCGGAGGCGCCGTTTGAGGCGGGAAATGGAAAAACACGAAGACACGACGGGACGGGAGTACAATGCCRAAACGGAAAATGTTTTGATATTTGAAGCCAGAAGAAGATATTAACCTTATCCTTTTCTTTCAAAGTTTTGATATATCAATTGGTAACCTGAACTCAATTTATGAAATCGTATATTTTTCAAAGTCTGTTTTTTTTTGAACAACAACTTCCGAGGGATTATAAAATCCTTTCTAAGAGCAGAAAAAGTCTATTGAATGATCATATGAGACAATCAGAAAGTGGACAAAAATATAAAAACATATACGATGGTTTGTACATTTCATTATTAGTCGATTGGTCAGTTGAGAGATCCCGACATGTACTTGTTTTATCCAATACAAACTTTTCATATTTTCCTCATTTTCAAAAGAGCCCGAGTAAGTTCAAAGACCAATCGACTGGCATAATTTCCGTATTCCATGAGAATTTCTAGAACAAATCGTGAGAATCCAGAAGAAAATTTCCTTGCTGTACACGGAAACTCATAAAAAATGGGGAATTTTTCTTAGGACATGTCCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAGCAGGAAATTGTAGG</pcr_primer_p1>
		<pcr_primer_p2>TATAATCCCTCGGAAGTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATGAGCAGGAAATTGTAGGCCGCGGAGGCGCCGTTTGAGGCGGGAAATGGAAAAACACGAAGACACGACGGGACGGGAGTACAATGCCAAAACGGAAAATGTTTTGATATTTGAAGCCAGAAGAAGATATTAACCTTATCCTTTTCTTTCAAAGTTTTGATATATCAATTGGTAACCTGAACTCAATTTATGAAATCGTATATTTTTCAAAGTCTGTTTTTTTTTGAACAACAACTTCCGAGGGATTATA</canonical_amplicon>
		<polymorphic_amplicon>AATGAGCAGGAAATTGTAGGCCGCGGAGGCGCCGTTTGAGGCGGGAAATGGAAAAACACGAAGACACGACGGGACGGGAGTACAATGCCRAAACGGAAAATGTTTTGATATTTGAAGCCAGAAGAAGATATTAACCTTATCCTTTTCTTTCAAAGTTTTGATATATCAATTGGTAACCTGAACTCAATTTATGAAATCGTATATTTTTCAAAGTCTGTTTTTTTTTGAACAACAACTTCCGAGGGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32842</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>661425</contig_pos>
        <strand></strand>
        <context>ttaaaaaaaa[A/T]ttttttttGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAATATATAACTTTGGGAACATTTTGATGCAGAAAAATTTAAAAAAAA</left_flank>
        <right_flank>TTTTTTTTGGTCGGAATCCCCCTTCGAAACTATTTTCAAAGATAGAATCA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTTTTGGTCGAAGTTCGAAAGCACGGAGTTTTTTGAAATTCAATTTGTAAACATGACTTAATTGAGCTAATTGAATTTTTGTCTGTGTGGAAGAAGGAACTAATTCTAGAGAGCCGGGAATCGAACTTTTAGAATAAGTTTAATTTCTAGGAAACAAAGATGTTGATCTCTGAAAAACTCCAAATAATTAGAGTGGTAGAAATCCAAATATGCGACGAAATCCCCGAAAAGTGCTGTTGAAAGTGAAAATTTTGCTTTTAAAAAATAAAAAAACATTTTTTCTTTAAAAAAAATAGGGACGAAGATAATTTCGCGGCCGTGACCTATATTTCTCACTGTGCGGGAACTCAAATCCTCGTCCCTATTCGCAACCATTTTTTTTTAATTTTCAACTGCGTTTTTCGAGGATTTATTTTTTTTTCCTGATTTTTTTCTCACTAATATTCTGAAAATATATAACTTTGGGAACATTTTGATGCAGAAAAATTTAAAAAAAAATTTTTTTTGGTCGGAATCCCCCTTCGAAACTATTTTCAAAGATAGAATCAGAGAAAAACTTCAAGATCTGATAATCAAAAAATATGCGCACTGCGCTCTGATAAATTATTTCTGCTTGAATTGATAAGATATTTTGATATTTTTGGCTCTGCTTTCTGGGGTTTTCAATTTTCTAATTATTAAAGTGACATCAGAATTTCAGTCCCACTTCTTTCAGCTATTTTTTTCGGTCTAATGATTCCCAAACGTTCCGAAAATAAGTTTTTTCAATCCATGTCTCTATTCCCCATCTGAATGCTTTTGCAGAATCTCGATTTCAAGATATTTATAGGACGGAGAAAAACCACGAGGCAGTTGACCCCAAAAACACGTTGCTGCTTCTTGACATGTTTCAATTCCGAAATGGGGAAAAAGCCATAAACAAGGGGCTCACACAAAATTCCAAATGAAGTTAGAAAAAAGAAAGGCAACTAGAACTTTGACCACGAAAAATAAATGGG</canonical>
            <polymorphic>TCTTTTTGGTCGAAGTTCGAAAGCACGGAGTTTTTTGAAATTCAATTTGTAAACATGACTTAATTGAGCTAATTGAATTTTTGTCTGTGTGGAAGAAGGAACTAATTCTAGAGAGCCGGGAATCGAACTTTTAGAATAAGTTTAATTTCTAGGAAACAAAGATGTTGATCTCTGAAAAACTCCAAATAATTAGAGTGGTAGAAATCCAAATATGCGACGAAATCCCCGAAAAGTGCTGTTGAAAGTGAAAATTTTGCTTTTAAAAAATAAAAAAACATTTTTTCTTTAAAAAAAATAGGGACGAAGATAATTTCGCGGCCGTGACCTATATTTCTCACTGTGCGGGAACTCAAATCCTCGTCCCTATTCGCAACCATTTTTTTTTAATTTTCAACTGCGTTTTTCGAGGATTTATTTTTTTTTCCTGATTTTTTTCTCACTAATATTCTGAAAATATATAACTTTGGGAACATTTTGATGCAGAAAAATTTAAAAAAAAWTTTTTTTTGGTCGGAATCCCCCTTCGAAACTATTTTCAAAGATAGAATCAGAGAAAAACTTCAAGATCTGATAATCAAAAAATATGCGCACTGCGCTCTGATAAATTATTTCTGCTTGAATTGATAAGATATTTTGATATTTTTGGCTCTGCTTTCTGGGGTTTTCAATTTTCTAATTATTAAAGTGACATCAGAATTTCAGTCCCACTTCTTTCAGCTATTTTTTTCGGTCTAATGATTCCCAAACGTTCCGAAAATAAGTTTTTTCAATCCATGTCTCTATTCCCCATCTGAATGCTTTTGCAGAATCTCGATTTCAAGATATTTATAGGACGGAGAAAAACCACGAGGCAGTTGACCCCAAAAACACGTTGCTGCTTCTTGACATGTTTCAATTCCGAAATGGGGAAAAAGCCATAAACAAGGGGCTCACACAAAATTCCAAATGAAGTTAGAAAAAAGAAAGGCAACTAGAACTTTGACCACGAAAAATAAATGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>243 237 196 174 63 38 37 12</canonical_bands>
                <polymorphic_bands>243 237 208 174 63 38 37</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>199 105 101 77 63 62 59 48 44 44 40 38 28 20 18 15 12 9 8 5 5</canonical_bands>
                <polymorphic_bands>199 117 101 77 63 62 59 48 44 44 40 38 28 20 18 15 9 8 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCAAATCCTCGTCCCTAT</pcr_primer_p1>
		<pcr_primer_p2>TCAGATCTTGAAGTTTTTCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>224</pcr_amplicon_size>
		<canonical_amplicon>ACTCAAATCCTCGTCCCTATTCGCAACCATTTTTTTTTAATTTTCAACTGCGTTTTTCGAGGATTTATTTTTTTTTCCTGATTTTTTTCTCACTAATATTCTGAAAATATATAACTTTGGGAACATTTTGATGCAGAAAAATTTAAAAAAAAATTTTTTTTGGTCGGAATCCCCCTTCGAAACTATTTTCAAAGATAGAATCAGAGAAAAACTTCAAGATCTGA</canonical_amplicon>
		<polymorphic_amplicon>ACTCAAATCCTCGTCCCTATTCGCAACCATTTTTTTTTAATTTTCAACTGCGTTTTTCGAGGATTTATTTTTTTTTCCTGATTTTTTTCTCACTAATATTCTGAAAATATATAACTTTGGGAACATTTTGATGCAGAAAAATTTAAAAAAAAWTTTTTTTTGGTCGGAATCCCCCTTCGAAACTATTTTCAAAGATAGAATCAGAGAAAAACTTCAAGATCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32843</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>663532</contig_pos>
        <strand>+</strand>
        <context>TGATGGATTA[C/T]ATAATTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGACAAGACAAAATGTGGTTTTAAAGAACAAGGAATTGGATGATGGATTA</left_flank>
        <right_flank>ATAATTTTTGAGATGAACAAAATTGAAAAAAAATACTACAAAATCTGTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCAAATGGAAATATTTCAAAAACAACATAGAACACTCCAGAGACATGTGAATACAAATTCAAAAAAAAAGGACTCACCTCTTAGTAACCGATGTATTTCAGAAAGCGATGTCGTGCACTTTTCCAATGCACTCGTCATTGTTTTGTGCCAGTGGTGATGATTGAAATGAGAATGATGAGGTTGGTGGGGAGGAAGTTGAGATAACGATGGGGACAAAGTGATGGATGAAGTGGTAGTGGGGGTGGAAGCAGAGTGCGATCGGTGATGCAATGGAATCGGACGATGGGCGGTCAGGTGGTGGAACCAAGGAGGAGATGAACACCGTGTGGAAGTGCTTGATGATACTTTAAACTCCATTTCACACGAGAGAGGGACTCCTGCAAAGATTGATGGACTTTTTGAATTTTTAGTGGTCTCGAGAAATTGGCAAGAGCCAAAGAGATGAATAGACAAGACAAAATGTGGTTTTAAAGAACAAGGAATTGGATGATGGATTATATAATTTTTGAGATGAACAAAATTGAAAAAAAATACTACAAAATCTGTCTAAATAAATGAATTGTAAGGATGGAAGTAAGAAAAAATATACGGAAAAGTGGTTTGAAGAGGCAAGGGATTTTAAAAAAATGGTTCCCACAGAATCTCGAGTTACCAAATATCTGCGAGCAAAGTACTGAAATAAGAGTTTTTGGTCCTTCATTAACAATCATCTTGAGAGGTACTGTAGTTTGACATACCGTATTTACTCCAATAGAAGCTCACCCAAGCCGTCAACTTTGAGCTTAATTATCTTGATTCCTGTAAAAGATATTGAACATCTATCAACTTTTAAAATATTGACGATCTTGTGATAAACAATTTATCAGTGGAAATGTTCTTGATATCTTTGGGAGGATCCGAGATAATTGAGCTCAAGAAGGTGGGCTTCTACCAGAGCACAAACGGTAAGAGCGGCTGTGGTTTGTTAGTTTTTGTAAGGTCTCGGATATTTAGGAAAG</canonical>
            <polymorphic>CCTCAAATGGAAATATTTCAAAAACAACATAGAACACTCCAGAGACATGTGAATACAAATTCAAAAAAAAAGGACTCACCTCTTAGTAACCGATGTATTTCAGAAAGCGATGTCGTGCACTTTTCCAATGCACTCGTCATTGTTTTGTGCCAGTGGTGATGATTGAAATGAGAATGATGAGGTTGGTGGGGAGGAAGTTGAGATAACGATGGGGACAAAGTGATGGATGAAGTGGTAGTGGGGGTGGAAGCAGAGTGCGATCGGTGATGCAATGGAATCGGACGATGGGCGGTCAGGTGGTGGAACCAAGGAGGAGATGAACACCGTGTGGAAGTGCTTGATGATACTTTAAACTCCATTTCACACGAGAGAGGGACTCCTGCAAAGATTGATGGACTTTTTGAATTTTTAGTGGTCTCGAGAAATTGGCAAGAGCCAAAGAGATGAATAGACAAGACAAAATGTGGTTTTAAAGAACAAGGAATTGGATGATGGATTAYATAATTTTTGAGATGAACAAAATTGAAAAAAAATACTACAAAATCTGTCTAAATAAATGAATTGTAAGGATGGAAGTAAGAAAAAATATACGGAAAAGTGGTTTGAAGAGGCAAGGGATTTTAAAAAAATGGTTCCCACAGAATCTCGAGTTACCAAATATCTGCGAGCAAAGTACTGAAATAAGAGTTTTTGGTCCTTCATTAACAATCATCTTGAGAGGTACTGTAGTTTGACATACCGTATTTACTCCAATAGAAGCTCACCCAAGCCGTCAACTTTGAGCTTAATTATCTTGATTCCTGTAAAAGATATTGAACATCTATCAACTTTTAAAATATTGACGATCTTGTGATAAACAATTTATCAGTGGAAATGTTCTTGATATCTTTGGGAGGATCCGAGATAATTGAGCTCAAGAAGGTGGGCTTCTACCAGAGCACAAACGGTAAGAGCGGCTGTGGTTTGTTAGTTTTTGTAAGGTCTCGGATATTTAGGAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTTGATGATACTTTAAACTCC</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTTACTTCCATCCTTACAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGCTTGATGATACTTTAAACTCCATTTCACACGAGAGAGGGACTCCTGCAAAGATTGATGGACTTTTTGAATTTTTAGTGGTCTCGAGAAATTGGCAAGAGCCAAAGAGATGAATAGACAAGACAAAATGTGGTTTTAAAGAACAAGGAATTGGATGATGGATTATATAATTTTTGAGATGAACAAAATTGAAAAAAAATACTACAAAATCTGTCTAAATAAATGAATTGTAAGGATGGAAGTAAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGCTTGATGATACTTTAAACTCCATTTCACACGAGAGAGGGACTCCTGCAAAGATTGATGGACTTTTTGAATTTTTAGTGGTCTCGAGAAATTGGCAAGAGCCAAAGAGATGAATAGACAAGACAAAATGTGGTTTTAAAGAACAAGGAATTGGATGATGGATTAYATAATTTTTGAGATGAACAAAATTGAAAAAAAATACTACAAAATCTGTCTAAATAAATGAATTGTAAGGATGGAAGTAAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32844</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>663558</contig_pos>
        <strand>+</strand>
        <context>AACAAAATTG[A/G]AAAAAAATAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACAAGGAATTGGATGATGGATTATATAATTTTTGAGATGAACAAAATTG</left_flank>
        <right_flank>AAAAAAATACTACAAAATCTGTCTAAATAAATGAATTGTAAGGATGGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATAGAACACTCCAGAGACATGTGAATACAAATTCAAAAAAAAAGGACTCACCTCTTAGTAACCGATGTATTTCAGAAAGCGATGTCGTGCACTTTTCCAATGCACTCGTCATTGTTTTGTGCCAGTGGTGATGATTGAAATGAGAATGATGAGGTTGGTGGGGAGGAAGTTGAGATAACGATGGGGACAAAGTGATGGATGAAGTGGTAGTGGGGGTGGAAGCAGAGTGCGATCGGTGATGCAATGGAATCGGACGATGGGCGGTCAGGTGGTGGAACCAAGGAGGAGATGAACACCGTGTGGAAGTGCTTGATGATACTTTAAACTCCATTTCACACGAGAGAGGGACTCCTGCAAAGATTGATGGACTTTTTGAATTTTTAGTGGTCTCGAGAAATTGGCAAGAGCCAAAGAGATGAATAGACAAGACAAAATGTGGTTTTAAAGAACAAGGAATTGGATGATGGATTATATAATTTTTGAGATGAACAAAATTGAAAAAAAATACTACAAAATCTGTCTAAATAAATGAATTGTAAGGATGGAAGTAAGAAAAAATATACGGAAAAGTGGTTTGAAGAGGCAAGGGATTTTAAAAAAATGGTTCCCACAGAATCTCGAGTTACCAAATATCTGCGAGCAAAGTACTGAAATAAGAGTTTTTGGTCCTTCATTAACAATCATCTTGAGAGGTACTGTAGTTTGACATACCGTATTTACTCCAATAGAAGCTCACCCAAGCCGTCAACTTTGAGCTTAATTATCTTGATTCCTGTAAAAGATATTGAACATCTATCAACTTTTAAAATATTGACGATCTTGTGATAAACAATTTATCAGTGGAAATGTTCTTGATATCTTTGGGAGGATCCGAGATAATTGAGCTCAAGAAGGTGGGCTTCTACCAGAGCACAAACGGTAAGAGCGGCTGTGGTTTGTTAGTTTTTGTAAGGTCTCGGATATTTAGGAAAGGGAAAAAATACAAAAAATAGAATTCA</canonical>
            <polymorphic>ACATAGAACACTCCAGAGACATGTGAATACAAATTCAAAAAAAAAGGACTCACCTCTTAGTAACCGATGTATTTCAGAAAGCGATGTCGTGCACTTTTCCAATGCACTCGTCATTGTTTTGTGCCAGTGGTGATGATTGAAATGAGAATGATGAGGTTGGTGGGGAGGAAGTTGAGATAACGATGGGGACAAAGTGATGGATGAAGTGGTAGTGGGGGTGGAAGCAGAGTGCGATCGGTGATGCAATGGAATCGGACGATGGGCGGTCAGGTGGTGGAACCAAGGAGGAGATGAACACCGTGTGGAAGTGCTTGATGATACTTTAAACTCCATTTCACACGAGAGAGGGACTCCTGCAAAGATTGATGGACTTTTTGAATTTTTAGTGGTCTCGAGAAATTGGCAAGAGCCAAAGAGATGAATAGACAAGACAAAATGTGGTTTTAAAGAACAAGGAATTGGATGATGGATTATATAATTTTTGAGATGAACAAAATTGRAAAAAAATACTACAAAATCTGTCTAAATAAATGAATTGTAAGGATGGAAGTAAGAAAAAATATACGGAAAAGTGGTTTGAAGAGGCAAGGGATTTTAAAAAAATGGTTCCCACAGAATCTCGAGTTACCAAATATCTGCGAGCAAAGTACTGAAATAAGAGTTTTTGGTCCTTCATTAACAATCATCTTGAGAGGTACTGTAGTTTGACATACCGTATTTACTCCAATAGAAGCTCACCCAAGCCGTCAACTTTGAGCTTAATTATCTTGATTCCTGTAAAAGATATTGAACATCTATCAACTTTTAAAATATTGACGATCTTGTGATAAACAATTTATCAGTGGAAATGTTCTTGATATCTTTGGGAGGATCCGAGATAATTGAGCTCAAGAAGGTGGGCTTCTACCAGAGCACAAACGGTAAGAGCGGCTGTGGTTTGTTAGTTTTTGTAAGGTCTCGGATATTTAGGAAAGGGAAAAAATACAAAAAATAGAATTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTTGATGATACTTTAAACTCC</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTTACTTCCATCCTTACAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGCTTGATGATACTTTAAACTCCATTTCACACGAGAGAGGGACTCCTGCAAAGATTGATGGACTTTTTGAATTTTTAGTGGTCTCGAGAAATTGGCAAGAGCCAAAGAGATGAATAGACAAGACAAAATGTGGTTTTAAAGAACAAGGAATTGGATGATGGATTATATAATTTTTGAGATGAACAAAATTGAAAAAAAATACTACAAAATCTGTCTAAATAAATGAATTGTAAGGATGGAAGTAAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGCTTGATGATACTTTAAACTCCATTTCACACGAGAGAGGGACTCCTGCAAAGATTGATGGACTTTTTGAATTTTTAGTGGTCTCGAGAAATTGGCAAGAGCCAAAGAGATGAATAGACAAGACAAAATGTGGTTTTAAAGAACAAGGAATTGGATGATGGATTATATAATTTTTGAGATGAACAAAATTGRAAAAAAATACTACAAAATCTGTCTAAATAAATGAATTGTAAGGATGGAAGTAAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32845</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>687442</contig_pos>
        <strand>+</strand>
        <context>AGAAGCGTGA[C/T]GGAKGACACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACGCGTCGCGTGTCAGCATTGCGGCTTTTAGCTGAAATGAGAAGCGTGA</left_flank>
        <right_flank>GGAGGACACTTTCTCTAGGTGCCAGTTAGCGATGTCGTAAAAGTTTTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGAAAATTGGTATCTAAATAAATAATGTTCTTCTGAAATTCGAAATTGCGAAATTTCAGAGGTCAAAAAGGTTTTCGAGATTGACAGGAGTTGATTACTGTCAAAAAGCAGTCGATCTGTCGAATGCGGCTTCGAAAGCAGAAAAAGAAGAGGATAATGAAGAAGGAATGATCGATATCGAATTTGAGGTAATTTCTCATTTCTGGAAAAAAAAGTAAGGTTTCGAACTAAAACAACAAGACAGAAAAGAGACGCAGTGATGTTAGTTTACTACATTGCAAAAGTGGGAAACCAACGTTTGTGGGGGCAACGAACTGAAAGTTGTTATTGAAAATTCAAAAAAAAACTATGATTAATACAGGTTATTATGATGGTATGCAAAAATCGGTACTATGGAAGAGAACATCTGTTGGTCGCGATTTGAAATTTGGCACCGAGCCAATTTTGGACGCGTCGCGTGTCAGCATTGCGGCTTTTAGCTGAAATGAGAAGCGTGACGGAGGACACTTTCTCTAGGTGCCAGTTAGCGATGTCGTAAAAGTTTTCAACACGAAAATTGTCGAAAAGCAATAGTAAAAAAACGCACCGAAAACAATCTTTTTCTATTCCACAGCTCCGATTTTTTCAATACCAGCATAACATGCTGCCAACGATTCCCACTTTTCAGCAATTAGATATTACTGCTCCTCGACCCGACTTCCTATCTTTACAATTCGACGTAGTTCTTGACAAGGGAACATGGGATGCAATGAGCCTTTCAGAAGAACGTGGCGATCGGCTGAAGGCGTACACCGATCTTCTCGACAAAGTGCTCAATAAGAATGGTCGCTTCGTAGTCTTCTCCTGCAATTTTACTCTGTATGTCACTGTGTTTCTACAGAACTGATTCTTTTTACAGAATTTCTTTTCAGAAATGAGCTTCAAGAGCAATTTGGTGGTTCGATTCTGGAGATGGTGTGTGAAGTGCCAGCGACTCATAGCTTTTCTTTCGGTGGAAA</canonical>
            <polymorphic>TGAGAAAATTGGTATCTAAATAAATAATGTTCTTCTGAAATTCGAAATTGCGAAATTTCAGAGGTCAAAAAGGTTTTCGAGATTGACAGGAGTTGATTACTGTCAAAAAGCAGTCGATCTGTCGAATGCGGCTTCGAAAGCAGAAAAAGAAGAGGATAATGAAGAAGGAATGATCGATATCGAATTTGAGGTAATTTCTCATTTCTGGAAAAAAAAGTAAGGTTTCGAACTAAAACAACAAGACAGAAAAGAGACGCAGTGATGTTAGTTTACTACATTGCAAAAGTGGGAAACCAACGTTTGTGGGGGCAACGAACTGAAAGTTGTTATTGAAAATTCAAAAAAAAACTATGATTAATACAGGTTATTATGATGGTATGCAAAAATCGGTACTATGGAAGAGAACATCTGTTGGTCGCGATTTGAAATTTGGCACCGAGCCAATTTTGGACGCGTCGCGTGTCAGCATTGCGGCTTTTAGCTGAAATGAGAAGCGTGAYGGAGGACACTTTCTCTAGGTGCCAGTTAGCGATGTCGTAAAAGTTTTCAACACGAAAATTGTCGAAAAGCAATAGTAAAAAAACGCACCGAAAACAATCTTTTTCTATTCCACAGCTCCGATTTTTTCAATACCAGCATAACATGCTGCCAACGATTCCCACTTTTCAGCAATTAGATATTACTGCTCCTCGACCCGACTTCCTATCTTTACAATTCGACGTAGTTCTTGACAAGGGAACATGGGATGCAATGAGCCTTTCAGAAGAACGTGGCGATCGGCTGAAGGCGTACACCGATCTTCTCGACAAAGTGCTCAATAAGAATGGTCGCTTCGTAGTCTTCTCCTGCAATTTTACTCTGTATGTCACTGTGTTTCTACAGAACTGATTCTTTTTACAGAATTTCTTTTCAGAAATGAGCTTCAAGAGCAATTTGGTGGTTCGATTCTGGAGATGGTGTGTGAAGTGCCAGCGACTCATAGCTTTTCTTTCGGTGGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>495 369 136</canonical_bands>
                <polymorphic_bands>864 136</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>495 369 136</canonical_bands>
                <polymorphic_bands>864 136</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGAACTGAAAGTTGTTATTGAA</pcr_primer_p1>
		<pcr_primer_p2>AATATCTAATTGCTGAAAAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>370</pcr_amplicon_size>
		<canonical_amplicon>ACGAACTGAAAGTTGTTATTGAAAATTCAAAAAAAAACTATGATTAATACAGGTTATTATGATGGTATGCAAAAATCGGTACTATGGAAGAGAACATCTGTTGGTCGCGATTTGAAATTTGGCACCGAGCCAATTTTGGACGCGTCGCGTGTCAGCATTGCGGCTTTTAGCTGAAATGAGAAGCGTGACGGAGGACACTTTCTCTAGGTGCCAGTTAGCGATGTCGTAAAAGTTTTCAACACGAAAATTGTCGAAAAGCAATAGTAAAAAAACGCACCGAAAACAATCTTTTTCTATTCCACAGCTCCGATTTTTTCAATACCAGCATAACATGCTGCCAACGATTCCCACTTTTCAGCAATTAGATATT</canonical_amplicon>
		<polymorphic_amplicon>ACGAACTGAAAGTTGTTATTGAAAATTCAAAAAAAAACTATGATTAATACAGGTTATTATGATGGTATGCAAAAATCGGTACTATGGAAGAGAACATCTGTTGGTCGCGATTTGAAATTTGGCACCGAGCCAATTTTGGACGCGTCGCGTGTCAGCATTGCGGCTTTTAGCTGAAATGAGAAGCGTGAYGGAGGACACTTTCTCTAGGTGCCAGTTAGCGATGTCGTAAAAGTTTTCAACACGAAAATTGTCGAAAAGCAATAGTAAAAAAACGCACCGAAAACAATCTTTTTCTATTCCACAGCTCCGATTTTTTCAATACCAGCATAACATGCTGCCAACGATTCCCACTTTTCAGCAATTAGATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32846</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>687446</contig_pos>
        <strand>+</strand>
        <context>GCGTGAYGGA[G/T]GACACTTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGTCGCGTGTCAGCATTGCGGCTTTTAGCTGAAATGAGAAGCGTGACGGA</left_flank>
        <right_flank>GACACTTTCTCTAGGTGCCAGTTAGCGATGTCGTAAAAGTTTTCAACACG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTGGTATCTAAATAAATAATGTTCTTCTGAAATTCGAAATTGCGAAATTTCAGAGGTCAAAAAGGTTTTCGAGATTGACAGGAGTTGATTACTGTCAAAAAGCAGTCGATCTGTCGAATGCGGCTTCGAAAGCAGAAAAAGAAGAGGATAATGAAGAAGGAATGATCGATATCGAATTTGAGGTAATTTCTCATTTCTGGAAAAAAAAGTAAGGTTTCGAACTAAAACAACAAGACAGAAAAGAGACGCAGTGATGTTAGTTTACTACATTGCAAAAGTGGGAAACCAACGTTTGTGGGGGCAACGAACTGAAAGTTGTTATTGAAAATTCAAAAAAAAACTATGATTAATACAGGTTATTATGATGGTATGCAAAAATCGGTACTATGGAAGAGAACATCTGTTGGTCGCGATTTGAAATTTGGCACCGAGCCAATTTTGGACGCGTCGCGTGTCAGCATTGCGGCTTTTAGCTGAAATGAGAAGCGTGACGGAGGACACTTTCTCTAGGTGCCAGTTAGCGATGTCGTAAAAGTTTTCAACACGAAAATTGTCGAAAAGCAATAGTAAAAAAACGCACCGAAAACAATCTTTTTCTATTCCACAGCTCCGATTTTTTCAATACCAGCATAACATGCTGCCAACGATTCCCACTTTTCAGCAATTAGATATTACTGCTCCTCGACCCGACTTCCTATCTTTACAATTCGACGTAGTTCTTGACAAGGGAACATGGGATGCAATGAGCCTTTCAGAAGAACGTGGCGATCGGCTGAAGGCGTACACCGATCTTCTCGACAAAGTGCTCAATAAGAATGGTCGCTTCGTAGTCTTCTCCTGCAATTTTACTCTGTATGTCACTGTGTTTCTACAGAACTGATTCTTTTTACAGAATTTCTTTTCAGAAATGAGCTTCAAGAGCAATTTGGTGGTTCGATTCTGGAGATGGTGTGTGAAGTGCCAGCGACTCATAGCTTTTCTTTCGGTGGAAAACAA</canonical>
            <polymorphic>AAAATTGGTATCTAAATAAATAATGTTCTTCTGAAATTCGAAATTGCGAAATTTCAGAGGTCAAAAAGGTTTTCGAGATTGACAGGAGTTGATTACTGTCAAAAAGCAGTCGATCTGTCGAATGCGGCTTCGAAAGCAGAAAAAGAAGAGGATAATGAAGAAGGAATGATCGATATCGAATTTGAGGTAATTTCTCATTTCTGGAAAAAAAAGTAAGGTTTCGAACTAAAACAACAAGACAGAAAAGAGACGCAGTGATGTTAGTTTACTACATTGCAAAAGTGGGAAACCAACGTTTGTGGGGGCAACGAACTGAAAGTTGTTATTGAAAATTCAAAAAAAAACTATGATTAATACAGGTTATTATGATGGTATGCAAAAATCGGTACTATGGAAGAGAACATCTGTTGGTCGCGATTTGAAATTTGGCACCGAGCCAATTTTGGACGCGTCGCGTGTCAGCATTGCGGCTTTTAGCTGAAATGAGAAGCGTGACGGAKGACACTTTCTCTAGGTGCCAGTTAGCGATGTCGTAAAAGTTTTCAACACGAAAATTGTCGAAAAGCAATAGTAAAAAAACGCACCGAAAACAATCTTTTTCTATTCCACAGCTCCGATTTTTTCAATACCAGCATAACATGCTGCCAACGATTCCCACTTTTCAGCAATTAGATATTACTGCTCCTCGACCCGACTTCCTATCTTTACAATTCGACGTAGTTCTTGACAAGGGAACATGGGATGCAATGAGCCTTTCAGAAGAACGTGGCGATCGGCTGAAGGCGTACACCGATCTTCTCGACAAAGTGCTCAATAAGAATGGTCGCTTCGTAGTCTTCTCCTGCAATTTTACTCTGTATGTCACTGTGTTTCTACAGAACTGATTCTTTTTACAGAATTTCTTTTCAGAAATGAGCTTCAAGAGCAATTTGGTGGTTCGATTCTGGAGATGGTGTGTGAAGTGCCAGCGACTCATAGCTTTTCTTTCGGTGGAAAACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGAACTGAAAGTTGTTATTGAA</pcr_primer_p1>
		<pcr_primer_p2>AATATCTAATTGCTGAAAAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>370</pcr_amplicon_size>
		<canonical_amplicon>ACGAACTGAAAGTTGTTATTGAAAATTCAAAAAAAAACTATGATTAATACAGGTTATTATGATGGTATGCAAAAATCGGTACTATGGAAGAGAACATCTGTTGGTCGCGATTTGAAATTTGGCACCGAGCCAATTTTGGACGCGTCGCGTGTCAGCATTGCGGCTTTTAGCTGAAATGAGAAGCGTGACGGAGGACACTTTCTCTAGGTGCCAGTTAGCGATGTCGTAAAAGTTTTCAACACGAAAATTGTCGAAAAGCAATAGTAAAAAAACGCACCGAAAACAATCTTTTTCTATTCCACAGCTCCGATTTTTTCAATACCAGCATAACATGCTGCCAACGATTCCCACTTTTCAGCAATTAGATATT</canonical_amplicon>
		<polymorphic_amplicon>ACGAACTGAAAGTTGTTATTGAAAATTCAAAAAAAAACTATGATTAATACAGGTTATTATGATGGTATGCAAAAATCGGTACTATGGAAGAGAACATCTGTTGGTCGCGATTTGAAATTTGGCACCGAGCCAATTTTGGACGCGTCGCGTGTCAGCATTGCGGCTTTTAGCTGAAATGAGAAGCGTGACGGAKGACACTTTCTCTAGGTGCCAGTTAGCGATGTCGTAAAAGTTTTCAACACGAAAATTGTCGAAAAGCAATAGTAAAAAAACGCACCGAAAACAATCTTTTTCTATTCCACAGCTCCGATTTTTTCAATACCAGCATAACATGCTGCCAACGATTCCCACTTTTCAGCAATTAGATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32847</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>691437</contig_pos>
        <strand>+</strand>
        <context>AAATATTTTA[A/T]TAATCAATCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGGCTTCGAAATGAACGATTTCGGAGTGACTGCGGAGCCGAAATATTTTA</left_flank>
        <right_flank>TAATCAATCAATGAAATTCTGAAACCTTGAAGTTCTAAGATTCAGAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGCATATTAAATGAAACTCTTCACAGAAAAAAAATCACATTTCTTGCTAGTCTAGAACCCGAGATACAGTTCTTTCAATCTTTATAGAAACTCAGAAAGTTAGAGTGTCTCGTTATCAGTGTTCCTCACCTCTCATACCTCAACTAAATAACTACTGAAAATTTGGCTCCGCGTCACTTCGAAACCAGTCACTTCGTAACCGGTTCAAAACCGTGGTAATGCAGGCGAATGGATAAATTGCAGACTACAAAAACAACTTTAGGGTCTTTAAATATGCTTTTTCTGATAGAACACATAATGAAAATCGAAAAATTTAAATTTTTTTCGACTTTTGAGAACATGAAGTTTTTGTTTTTTTCGATTTTCATTATGTGTTCTATCAGAAAAAGCATATCTGAGAAAAGTTGTTTTTGTAGTCTGAAATTTGTCCATTCGCCTGCATTACCACGGCTTCGAAATGAACGATTTCGGAGTGACTGCGGAGCCGAAATATTTTAATAATCAATCAATGAAATTCTGAAACCTTGAAGTTCTAAGATTCAGAAAATCTTTAATTCAAAAAAACACTGAAAATAAGAATTTCTGGAATTTTGAGAATCGGAAAAAACATCTGAAATTTTGAGATTTTTGAATGTCTAGATTCCTGTCTTGTTTTGAAGTTTTTCTTTTTTTTTCTTAGGTTTTTAGATTTTGAGAGTCTGAAATTCTAAGATTCTAAGATATTGTTGGTTGGACCTAAATCGAATAACTGTGAAATTACGGTCTAATAAACAAAATAATGTTCCATAATCAATTTATTGAGTTCAATTCAAACAATTGGACAACGAAATTTGGTTCTCCAATTCCGATAACAAATTTTGAAATTAAAGATCCTGAAAATGTAAAATCTCAAAAACCTTTATTCTAATGGATCCAAGGTTTTATATTTGACACCTAAGATTCTTATAATGCTAAATTCCAGGGATTCATGAATAAATTACTAATTTCAGATCATCGAT</canonical>
            <polymorphic>TTGGCATATTAAATGAAACTCTTCACAGAAAAAAAATCACATTTCTTGCTAGTCTAGAACCCGAGATACAGTTCTTTCAATCTTTATAGAAACTCAGAAAGTTAGAGTGTCTCGTTATCAGTGTTCCTCACCTCTCATACCTCAACTAAATAACTACTGAAAATTTGGCTCCGCGTCACTTCGAAACCAGTCACTTCGTAACCGGTTCAAAACCGTGGTAATGCAGGCGAATGGATAAATTGCAGACTACAAAAACAACTTTAGGGTCTTTAAATATGCTTTTTCTGATAGAACACATAATGAAAATCGAAAAATTTAAATTTTTTTCGACTTTTGAGAACATGAAGTTTTTGTTTTTTTCGATTTTCATTATGTGTTCTATCAGAAAAAGCATATCTGAGAAAAGTTGTTTTTGTAGTCTGAAATTTGTCCATTCGCCTGCATTACCACGGCTTCGAAATGAACGATTTCGGAGTGACTGCGGAGCCGAAATATTTTAWTAATCAATCAATGAAATTCTGAAACCTTGAAGTTCTAAGATTCAGAAAATCTTTAATTCAAAAAAACACTGAAAATAAGAATTTCTGGAATTTTGAGAATCGGAAAAAACATCTGAAATTTTGAGATTTTTGAATGTCTAGATTCCTGTCTTGTTTTGAAGTTTTTCTTTTTTTTTCTTAGGTTTTTAGATTTTGAGAGTCTGAAATTCTAAGATTCTAAGATATTGTTGGTTGGACCTAAATCGAATAACTGTGAAATTACGGTCTAATAAACAAAATAATGTTCCATAATCAATTTATTGAGTTCAATTCAAACAATTGGACAACGAAATTTGGTTCTCCAATTCCGATAACAAATTTTGAAATTAAAGATCCTGAAAATGTAAAATCTCAAAAACCTTTATTCTAATGGATCCAAGGTTTTATATTTGACACCTAAGATTCTTATAATGCTAAATTCCAGGGATTCATGAATAAATTACTAATTTCAGATCATCGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>313 261 181 134 56 46 9</canonical_bands>
                <polymorphic_bands>313 261 237 134 46 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTAGTCTGAAATTTGTCC</pcr_primer_p1>
		<pcr_primer_p2>AAAACAAGACAGGAATCTAGACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTAGTCTGAAATTTGTCCATTCGCCTGCATTACCACGGCTTCGAAATGAACGATTTCGGAGTGACTGCGGAGCCGAAATATTTTAATAATCAATCAATGAAATTCTGAAACCTTGAAGTTCTAAGATTCAGAAAATCTTTAATTCAAAAAAACACTGAAAATAAGAATTTCTGGAATTTTGAGAATCGGAAAAAACATCTGAAATTTTGAGATTTTTGAATGTCTAGATTCCTGTCTTGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTAGTCTGAAATTTGTCCATTCGCCTGCATTACCACGGCTTCGAAATGAACGATTTCGGAGTGACTGCGGAGCCGAAATATTTTAWTAATCAATCAATGAAATTCTGAAACCTTGAAGTTCTAAGATTCAGAAAATCTTTAATTCAAAAAAACACTGAAAATAAGAATTTCTGGAATTTTGAGAATCGGAAAAAACATCTGAAATTTTGAGATTTTTGAATGTCTAGATTCCTGTCTTGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32848</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>731397</contig_pos>
        <strand>+</strand>
        <context>ATTCATTCGA[G/T]CAGAGAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCTGAAAGCCGGAAACATTGAATCAAAAATAATGAAAAACATTCATTCGA</left_flank>
        <right_flank>CAGAGAAAATGATTGAAGGAGCTACAAAACCTTTTAATAGGTCAAGATCT</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATAGAAAAAATTAGTGAAAATTTTTCTATGACGTCGAACTAGAAAAATTGACTCGACAATGTATTTTTTCAAATTAATAAAACGACTTAAAATTAGAGAGAACCATCAAAAATCCCACAGAAACTCGGAAAGCTCCTGAAAAAAGCACGAGGATTGCGCCATCACGCAATTCTTCACACAAATGCGTCAGCAGTCAGCAAAGCGCAAGTTGAAGTCGGAATAACGGAGCATCGTTTGAAAGAACGGCTTCTCAAATTTCGACGAAAAAATGAAAGAAGTGGAAAATACCTAAAGGAGAAAAACTGTGCGGCAAAACCGTGCCCAGCTTACAATTAGGCTCTCACTTTCCGGAAAAAATTTGTCCTCGGATTTGAGAAGCTTCGACGGAAAGTGTGATATGCTGTAGGCTCTTCTGGAATAACTTTTGGCGATGAATAACAAAACTATCCTGAAAGCCGGAAACATTGAATCAAAAATAATGAAAAACATTCATTCGAGCAGAGAAAATGATTGAAGGAGCTACAAAACCTTTTAATAGGTCAAGATCTCCGAGTTTGATTATATGCGCTGAATAAGTATTCAGTTTCAAGAATATTTATATTTTCCGGACGGTCTTAAATATTCATTAATCAATTATCAATAAAAAAAAATTAAGAGCAGTGTGTACAACAAAATAAGAAAGAAACCATGAAAAGACGATGCTGAAGACGAAGTATTGATAAATGGATAGAAAAAGTCATAAGGAAGACGAATATCAATATAAGGCAGAGCTGCGAAAACATGTCTCGGGGGTGGTGTTACATCCGTGAAAGATATAGAGACCGGCAGTCGTATCAATTGACCAGGAATATAGGGGACATCATCCAAAAGTAATTGTACATTTCCTGCTATTACTACTTCTCGATAATTTTTTGTAGAGCCCTGTTTTGAGTGATAAATTTGAAGAAGTGAGGATACGGGTAAGCGGCATGATGAAGAAGAAGGTGATAACTGTAAGG</canonical>
            <polymorphic>AAATAGAAAAAATTAGTGAAAATTTTTCTATGACGTCGAACTAGAAAAATTGACTCGACAATGTATTTTTTCAAATTAATAAAACGACTTAAAATTAGAGAGAACCATCAAAAATCCCACAGAAACTCGGAAAGCTCCTGAAAAAAGCACGAGGATTGCGCCATCACGCAATTCTTCACACAAATGCGTCAGCAGTCAGCAAAGCGCAAGTTGAAGTCGGAATAACGGAGCATCGTTTGAAAGAACGGCTTCTCAAATTTCGACGAAAAAATGAAAGAAGTGGAAAATACCTAAAGGAGAAAAACTGTGCGGCAAAACCGTGCCCAGCTTACAATTAGGCTCTCACTTTCCGGAAAAAATTTGTCCTCGGATTTGAGAAGCTTCGACGGAAAGTGTGATATGCTGTAGGCTCTTCTGGAATAACTTTTGGCGATGAATAACAAAACTATCCTGAAAGCCGGAAACATTGAATCAAAAATAATGAAAAACATTCATTCGAKCAGAGAAAATGATTGAAGGAGCTACAAAACCTTTTAATAGGTCAAGATCTCCGAGTTTGATTATATGCGCTGAATAAGTATTCAGTTTCAAGAATATTTATATTTTCCGGACGGTCTTAAATATTCATTAATCAATTATCAATAAAAAAAAATTAAGAGCAGTGTGTACAACAAAATAAGAAAGAAACCATGAAAAGACGATGCTGAAGACGAAGTATTGATAAATGGATAGAAAAAGTCATAAGGAAGACGAATATCAATATAAGGCAGAGCTGCGAAAACATGTCTCGGGGGTGGTGTTACATCCGTGAAAGATATAGAGACCGGCAGTCGTATCAATTGACCAGGAATATAGGGGACATCATCCAAAAGTAATTGTACATTTCCTGCTATTACTACTTCTCGATAATTTTTTGTAGAGCCCTGTTTTGAGTGATAAATTTGAAGAAGTGAGGATACGGGTAAGCGGCATGATGAAGAAGAAGGTGATAACTGTAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCGATGAATAACAAAACTATC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTTGTACACACTGCTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGCGATGAATAACAAAACTATCCTGAAAGCCGGAAACATTGAATCAAAAATAATGAAAAACATTCATTCGAGCAGAGAAAATGATTGAAGGAGCTACAAAACCTTTTAATAGGTCAAGATCTCCGAGTTTGATTATATGCGCTGAATAAGTATTCAGTTTCAAGAATATTTATATTTTCCGGACGGTCTTAAATATTCATTAATCAATTATCAATAAAAAAAAATTAAGAGCAGTGTGTACAACAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGCGATGAATAACAAAACTATCCTGAAAGCCGGAAACATTGAATCAAAAATAATGAAAAACATTCATTCGAKCAGAGAAAATGATTGAAGGAGCTACAAAACCTTTTAATAGGTCAAGATCTCCGAGTTTGATTATATGCGCTGAATAAGTATTCAGTTTCAAGAATATTTATATTTTCCGGACGGTCTTAAATATTCATTAATCAATTATCAATAAAAAAAAATTAAGAGCAGTGTGTACAACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32849</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>739465</contig_pos>
        <strand>-</strand>
        <context>TTCATAGTTT[A/G]GAGGATTCCG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGATTCATCCAGGCAAACAATCAAATTATCTACACAATCTTCATAGTTT</left_flank>
        <right_flank>GAGGATTCCGATCAGGAAGAAGTCTCATATAACAGATCATATGGTTGTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATTAAGGAACGAAAAAACAGCCAAAAGGAGGAAGACGGAATAAGAAACACAATTTTGAAAAAAGTCTAATTTAAAAAATTGAGAATCGCATAAAAAGGAAGTTTGGCTTCTCAAACGACATTAGATTGAGAAAATGCTTTTTTGAAAAATATAACTTTTTCGAATTATCGGAAAGAATGGGAAAAAGTTTTTAAAAACGGAAGGAAGAAGAGGGATTGAAGATATAAAATCTTGGAGGAGAAGGAATACGAAATTCCGTTCATTTTTGGTTAAATACTGTGAAATAATATTTGAATTTGAATGTTTATGGGGATATTCATGATACTATCTAAAAGGTGTATTTTCCATCGAATTGGATGCTTCCTTCCTTCTTACTCTCAGAAATTGATTTCATTGCGATCTCAACCTGAGTGAGACACTCTTCATTCTCTGAAGCCAAATGTTCACTTGATTCATCCAGGCAAACAATCAAATTATCTACACAATCTTCATAGTTTCGAGGATTCCGATCAGGAAGAAGTCTCATATAACAGATCATATGGTTGTATGCACAAGAAGAAAAAGTGGCTGCAACAAATCTTGTTTTATTTATTTGCCAAATAATCGTTACTGTTCATTTTTGGACATTTTTCATATAATTCCAAGTAGTTCTTTTCAACAGTCTTATTGAGGGCAGGAGCGTAACCGGCGATTGGTTTTTTTGCATCTAAAATGTTCTCAATCTACGTTGTTCTCTTTTTCCTAACGCTTAAACTAACTGGANNNNNNNNNNGCCTTTTTACGGTTCATGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCATGCGTTATCCCATGATTCTGTGGATAGCCGTATTACCGCCTTTGAGTGAGTTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGC</canonical>
            <polymorphic>AGATTAAGGAACGAAAAAACAGCCAAAAGGAGGAAGACGGAATAAGAAACACAATTTTGAAAAAAGTCTAATTTAAAAAATTGAGAATCGCATAAAAAGGAAGTTTGGCTTCTCAAACGACATTAGATTGAGAAAATGCTTTTTTGAAAAATATAACTTTTTCGAATTATCGGAAAGAATGGGAAAAAGTTTTTAAAAACGGAAGGAAGAAGAGGGATTGAAGATATAAAATCTTGGAGGAGAAGGAATACGAAATTCCGTTCATTTTTGGTTAAATACTGTGAAATAATATTTGAATTTGAATGTTTATGGGGATATTCATGATACTATCTAAAAGGTGTATTTTCCATCGAATTGGATGCTTCCTTCCTTCTTACTCTCAGAAATTGATTTCATTGCGATCTCAACCTGAGTGAGACACTCTTCATTCTCTGAAGCCAAATGTTCACTTGATTCATCCAGGCAAACAATCAAATTATCTACACAATCTTCATAGTTTRGAGGATTCCGATCAGGAAGAAGTCTCATATAACAGATCATATGGTTGTATGCACAAGAAGAAAAAGTGGCTGCAACAAATCTTGTTTTATTTATTTGCCAAATAATCGTTACTGTTCATTTTTGGACATTTTTCATATAATTCCAAGTAGTTCTTTTCAACAGTCTTATTGAGGGCAGGAGCGTAACCGGCGATTGGTTTTTTTGCATCTAAAATGTTCTCAATCTACGTTGTTCTCTTTTTCCTAACGCTTAAACTAACTGGANNNNNNNNNNGCCTTTTTACGGTTCATGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCATGCGTTATCCCATGATTCTGTGGATAGCCGTATTACCGCCTTTGAGTGAGTTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 188 163 149</canonical_bands>
                <polymorphic_bands>649 188 163</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTGAGACACTCTTCATTCTCTG</pcr_primer_p1>
		<pcr_primer_p2>GTTGAAAAGAACTACTTGGAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTGAGACACTCTTCATTCTCTGAAGCCAAATGTTCACTTGATTCATCCAGGCAAACAATCAAATTATCTACACAATCTTCATAGTTTCGAGGATTCCGATCAGGAAGAAGTCTCATATAACAGATCATATGGTTGTATGCACAAGAAGAAAAAGTGGCTGCAACAAATCTTGTTTTATTTATTTGCCAAATAATCGTTACTGTTCATTTTTGGACATTTTTCATATAATTCCAAGTAGTTCTTTTCAAC</canonical_amplicon>
		<polymorphic_amplicon>AGTGAGACACTCTTCATTCTCTGAAGCCAAATGTTCACTTGATTCATCCAGGCAAACAATCAAATTATCTACACAATCTTCATAGTTTRGAGGATTCCGATCAGGAAGAAGTCTCATATAACAGATCATATGGTTGTATGCACAAGAAGAAAAAGTGGCTGCAACAAATCTTGTTTTATTTATTTGCCAAATAATCGTTACTGTTCATTTTTGGACATTTTTCATATAATTCCAAGTAGTTCTTTTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32850</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>739755</contig_pos>
        <strand></strand>
        <context>TTTACGGTTC[A/C]TGGCCTTTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCCTAACGCTTAAACTAACTGGANNNNNNNNNNGCCTTTTTACGGTTC</left_flank>
        <right_flank>TGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCATGCGTTATCCCAT</right_flank>
        <qual_score>30</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTGAATTTGAATGTTTATGGGGATATTCATGATACTATCTAAAAGGTGTATTTTCCATCGAATTGGATGCTTCCTTCCTTCTTACTCTCAGAAATTGATTTCATTGCGATCTCAACCTGAGTGAGACACTCTTCATTCTCTGAAGCCAAATGTTCACTTGATTCATCCAGGCAAACAATCAAATTATCTACACAATCTTCATAGTTTCGAGGATTCCGATCAGGAAGAAGTCTCATATAACAGATCATATGGTTGTATGCACAAGAAGAAAAAGTGGCTGCAACAAATCTTGTTTTATTTATTTGCCAAATAATCGTTACTGTTCATTTTTGGACATTTTTCATATAATTCCAAGTAGTTCTTTTCAACAGTCTTATTGAGGGCAGGAGCGTAACCGGCGATTGGTTTTTTTGCATCTAAAATGTTCTCAATCTACGTTGTTCTCTTTTTCCTAACGCTTAAACTAACTGGANNNNNNNNNNGCCTTTTTACGGTTCATGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCATGCGTTATCCCATGATTCTGTGGATAGCCGTATTACCGCCTTTGAGTGAGTTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACATGATTACGAATTCGAGCTCGGTACCCTGGAAAATGACAATATTTACAACAGAAGAAAAATTATGTTTTGGTCCACAAAATACAGAATCACAAAAAAGTCATTCTTTTCTAAGCAAATACTTTTTATAA</canonical>
            <polymorphic>ATTTGAATTTGAATGTTTATGGGGATATTCATGATACTATCTAAAAGGTGTATTTTCCATCGAATTGGATGCTTCCTTCCTTCTTACTCTCAGAAATTGATTTCATTGCGATCTCAACCTGAGTGAGACACTCTTCATTCTCTGAAGCCAAATGTTCACTTGATTCATCCAGGCAAACAATCAAATTATCTACACAATCTTCATAGTTTCGAGGATTCCGATCAGGAAGAAGTCTCATATAACAGATCATATGGTTGTATGCACAAGAAGAAAAAGTGGCTGCAACAAATCTTGTTTTATTTATTTGCCAAATAATCGTTACTGTTCATTTTTGGACATTTTTCATATAATTCCAAGTAGTTCTTTTCAACAGTCTTATTGAGGGCAGGAGCGTAACCGGCGATTGGTTTTTTTGCATCTAAAATGTTCTCAATCTACGTTGTTCTCTTTTTCCTAACGCTTAAACTAACTGGANNNNNNNNNNGCCTTTTTACGGTTCMTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCATGCGTTATCCCATGATTCTGTGGATAGCCGTATTACCGCCTTTGAGTGAGTTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACATGATTACGAATTCGAGCTCGGTACCCTGGAAAATGACAATATTTACAACAGAAGAAAAATTATGTTTTGGTCCACAAAATACAGAATCACAAAAAAGTCATTCTTTTCTAAGCAAATACTTTTTATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>469 323 129 30 27 12 10</canonical_bands>
                <polymorphic_bands>496 323 129 30 12 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCCAAGTAGTTCTTTTCAACA</pcr_primer_p1>
		<pcr_primer_p2>CTCACTCAAAGGCGGTAATA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>ATTCCAAGTAGTTCTTTTCAACAGTCTTATTGAGGGCAGGAGCGTAACCGGCGATTGGTTTTTTTGCATCTAAAATGTTCTCAATCTACGTTGTTCTCTTTTTCCTAACGCTTAAACTAACTGGANNNNNNNNNNGCCTTTTTACGGTTCATGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCATGCGTTATCCCATGATTCTGTGGATAGCCGTATTACCGCCTTTGAGTGAG</canonical_amplicon>
		<polymorphic_amplicon>ATTCCAAGTAGTTCTTTTCAACAGTCTTATTGAGGGCAGGAGCGTAACCGGCGATTGGTTTTTTTGCATCTAAAATGTTCTCAATCTACGTTGTTCTCTTTTTCCTAACGCTTAAACTAACTGGANNNNNNNNNNGCCTTTTTACGGTTCMTGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCATGCGTTATCCCATGATTCTGTGGATAGCCGTATTACCGCCTTTGAGTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32851</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>739792</contig_pos>
        <strand></strand>
        <context>ATGTTCTTTC[A/C]TGCGTTATCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTTTTACGGTTCATGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTC</left_flank>
        <right_flank>TGCGTTATCCCATGATTCTGTGGATAGCCGTATTACCGCCTTTGAGTGAG</right_flank>
        <qual_score>28</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCTAAAAGGTGTATTTTCCATCGAATTGGATGCTTCCTTCCTTCTTACTCTCAGAAATTGATTTCATTGCGATCTCAACCTGAGTGAGACACTCTTCATTCTCTGAAGCCAAATGTTCACTTGATTCATCCAGGCAAACAATCAAATTATCTACACAATCTTCATAGTTTCGAGGATTCCGATCAGGAAGAAGTCTCATATAACAGATCATATGGTTGTATGCACAAGAAGAAAAAGTGGCTGCAACAAATCTTGTTTTATTTATTTGCCAAATAATCGTTACTGTTCATTTTTGGACATTTTTCATATAATTCCAAGTAGTTCTTTTCAACAGTCTTATTGAGGGCAGGAGCGTAACCGGCGATTGGTTTTTTTGCATCTAAAATGTTCTCAATCTACGTTGTTCTCTTTTTCCTAACGCTTAAACTAACTGGANNNNNNNNNNGCCTTTTTACGGTTCATGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCATGCGTTATCCCATGATTCTGTGGATAGCCGTATTACCGCCTTTGAGTGAGTTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACATGATTACGAATTCGAGCTCGGTACCCTGGAAAATGACAATATTTACAACAGAAGAAAAATTATGTTTTGGTCCACAAAATACAGAATCACAAAAAAGTCATTCTTTTCTAAGCAAATACTTTTTATAACTCAAAGAACTCAGAACCAGGGAAGGTGAACAGAGTA</canonical>
            <polymorphic>TATCTAAAAGGTGTATTTTCCATCGAATTGGATGCTTCCTTCCTTCTTACTCTCAGAAATTGATTTCATTGCGATCTCAACCTGAGTGAGACACTCTTCATTCTCTGAAGCCAAATGTTCACTTGATTCATCCAGGCAAACAATCAAATTATCTACACAATCTTCATAGTTTCGAGGATTCCGATCAGGAAGAAGTCTCATATAACAGATCATATGGTTGTATGCACAAGAAGAAAAAGTGGCTGCAACAAATCTTGTTTTATTTATTTGCCAAATAATCGTTACTGTTCATTTTTGGACATTTTTCATATAATTCCAAGTAGTTCTTTTCAACAGTCTTATTGAGGGCAGGAGCGTAACCGGCGATTGGTTTTTTTGCATCTAAAATGTTCTCAATCTACGTTGTTCTCTTTTTCCTAACGCTTAAACTAACTGGANNNNNNNNNNGCCTTTTTACGGTTCATGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCMTGCGTTATCCCATGATTCTGTGGATAGCCGTATTACCGCCTTTGAGTGAGTTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACATGATTACGAATTCGAGCTCGGTACCCTGGAAAATGACAATATTTACAACAGAAGAAAAATTATGTTTTGGTCCACAAAATACAGAATCACAAAAAAGTCATTCTTTTCTAAGCAAATACTTTTTATAACTCAAAGAACTCAGAACCAGGGAAGGTGAACAGAGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>462 323 166 27 12 10</canonical_bands>
                <polymorphic_bands>462 323 166 27 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCCTAACGCTTAAACTAACTG</pcr_primer_p1>
		<pcr_primer_p2>TTCTGTTGTAAATATTGTCATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>476</pcr_amplicon_size>
		<canonical_amplicon>TTTCCTAACGCTTAAACTAACTGGANNNNNNNNNNGCCTTTTTACGGTTCATGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCATGCGTTATCCCATGATTCTGTGGATAGCCGTATTACCGCCTTTGAGTGAGTTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACATGATTACGAATTCGAGCTCGGTACCCTGGAAAATGACAATATTTACAACAGAA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCTAACGCTTAAACTAACTGGANNNNNNNNNNGCCTTTTTACGGTTCATGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCMTGCGTTATCCCATGATTCTGTGGATAGCCGTATTACCGCCTTTGAGTGAGTTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACATGATTACGAATTCGAGCTCGGTACCCTGGAAAATGACAATATTTACAACAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32852</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>739804</contig_pos>
        <strand></strand>
        <context>GCGTTATCCC[A/C]TGATTCTGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCATGCGTTATCCC</left_flank>
        <right_flank>TGATTCTGTGGATAGCCGTATTACCGCCTTTGAGTGAGTTGATACCGCTC</right_flank>
        <qual_score>27</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATTTTCCATCGAATTGGATGCTTCCTTCCTTCTTACTCTCAGAAATTGATTTCATTGCGATCTCAACCTGAGTGAGACACTCTTCATTCTCTGAAGCCAAATGTTCACTTGATTCATCCAGGCAAACAATCAAATTATCTACACAATCTTCATAGTTTCGAGGATTCCGATCAGGAAGAAGTCTCATATAACAGATCATATGGTTGTATGCACAAGAAGAAAAAGTGGCTGCAACAAATCTTGTTTTATTTATTTGCCAAATAATCGTTACTGTTCATTTTTGGACATTTTTCATATAATTCCAAGTAGTTCTTTTCAACAGTCTTATTGAGGGCAGGAGCGTAACCGGCGATTGGTTTTTTTGCATCTAAAATGTTCTCAATCTACGTTGTTCTCTTTTTCCTAACGCTTAAACTAACTGGANNNNNNNNNNGCCTTTTTACGGTTCATGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCATGCGTTATCCCATGATTCTGTGGATAGCCGTATTACCGCCTTTGAGTGAGTTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACATGATTACGAATTCGAGCTCGGTACCCTGGAAAATGACAATATTTACAACAGAAGAAAAATTATGTTTTGGTCCACAAAATACAGAATCACAAAAAAGTCATTCTTTTCTAAGCAAATACTTTTTATAACTCAAAGAACTCAGAACCAGGGAAGGTGAACAGAGTACGAAGGCTAGAT</canonical>
            <polymorphic>GTATTTTCCATCGAATTGGATGCTTCCTTCCTTCTTACTCTCAGAAATTGATTTCATTGCGATCTCAACCTGAGTGAGACACTCTTCATTCTCTGAAGCCAAATGTTCACTTGATTCATCCAGGCAAACAATCAAATTATCTACACAATCTTCATAGTTTCGAGGATTCCGATCAGGAAGAAGTCTCATATAACAGATCATATGGTTGTATGCACAAGAAGAAAAAGTGGCTGCAACAAATCTTGTTTTATTTATTTGCCAAATAATCGTTACTGTTCATTTTTGGACATTTTTCATATAATTCCAAGTAGTTCTTTTCAACAGTCTTATTGAGGGCAGGAGCGTAACCGGCGATTGGTTTTTTTGCATCTAAAATGTTCTCAATCTACGTTGTTCTCTTTTTCCTAACGCTTAAACTAACTGGANNNNNNNNNNGCCTTTTTACGGTTCATGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCATGCGTTATCCCMTGATTCTGTGGATAGCCGTATTACCGCCTTTGAGTGAGTTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACATGATTACGAATTCGAGCTCGGTACCCTGGAAAATGACAATATTTACAACAGAAGAAAAATTATGTTTTGGTCCACAAAATACAGAATCACAAAAAAGTCATTCTTTTCTAAGCAAATACTTTTTATAACTCAAAGAACTCAGAACCAGGGAAGGTGAACAGAGTACGAAGGCTAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>450 323 178 27 12 10</canonical_bands>
                <polymorphic_bands>450 335 178 27 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCCTAACGCTTAAACTAACTG</pcr_primer_p1>
		<pcr_primer_p2>TTCTGTTGTAAATATTGTCATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>476</pcr_amplicon_size>
		<canonical_amplicon>TTTCCTAACGCTTAAACTAACTGGANNNNNNNNNNGCCTTTTTACGGTTCATGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCATGCGTTATCCCATGATTCTGTGGATAGCCGTATTACCGCCTTTGAGTGAGTTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACATGATTACGAATTCGAGCTCGGTACCCTGGAAAATGACAATATTTACAACAGAA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCTAACGCTTAAACTAACTGGANNNNNNNNNNGCCTTTTTACGGTTCATGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCATGCGTTATCCCMTGATTCTGTGGATAGCCGTATTACCGCCTTTGAGTGAGTTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACATGATTACGAATTCGAGCTCGGTACCCTGGAAAATGACAATATTTACAACAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32853</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>739819</contig_pos>
        <strand></strand>
        <context>TCTGTGGATA[G/A]CCGTATTACC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GCCTTTTGCTCACATGTTCTTTCATGCGTTATCCCATGATTCTGTGGATA</left_flank>
        <right_flank>CCGTATTACCGCCTTTGAGTGAGTTGATACCGCTCGCCGCAGCCGAACGA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGATGCTTCCTTCCTTCTTACTCTCAGAAATTGATTTCATTGCGATCTCAACCTGAGTGAGACACTCTTCATTCTCTGAAGCCAAATGTTCACTTGATTCATCCAGGCAAACAATCAAATTATCTACACAATCTTCATAGTTTCGAGGATTCCGATCAGGAAGAAGTCTCATATAACAGATCATATGGTTGTATGCACAAGAAGAAAAAGTGGCTGCAACAAATCTTGTTTTATTTATTTGCCAAATAATCGTTACTGTTCATTTTTGGACATTTTTCATATAATTCCAAGTAGTTCTTTTCAACAGTCTTATTGAGGGCAGGAGCGTAACCGGCGATTGGTTTTTTTGCATCTAAAATGTTCTCAATCTACGTTGTTCTCTTTTTCCTAACGCTTAAACTAACTGGANNNNNNNNNNGCCTTTTTACGGTTCATGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCATGCGTTATCCCATGATTCTGTGGATAGCCGTATTACCGCCTTTGAGTGAGTTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACATGATTACGAATTCGAGCTCGGTACCCTGGAAAATGACAATATTTACAACAGAAGAAAAATTATGTTTTGGTCCACAAAATACAGAATCACAAAAAAGTCATTCTTTTCTAAGCAAATACTTTTTATAACTCAAAGAACTCAGAACCAGGGAAGGTGAACAGAGTACGAAGGCTAGATCGGGTCACTAGAACA</canonical>
            <polymorphic>TTGGATGCTTCCTTCCTTCTTACTCTCAGAAATTGATTTCATTGCGATCTCAACCTGAGTGAGACACTCTTCATTCTCTGAAGCCAAATGTTCACTTGATTCATCCAGGCAAACAATCAAATTATCTACACAATCTTCATAGTTTCGAGGATTCCGATCAGGAAGAAGTCTCATATAACAGATCATATGGTTGTATGCACAAGAAGAAAAAGTGGCTGCAACAAATCTTGTTTTATTTATTTGCCAAATAATCGTTACTGTTCATTTTTGGACATTTTTCATATAATTCCAAGTAGTTCTTTTCAACAGTCTTATTGAGGGCAGGAGCGTAACCGGCGATTGGTTTTTTTGCATCTAAAATGTTCTCAATCTACGTTGTTCTCTTTTTCCTAACGCTTAAACTAACTGGANNNNNNNNNNGCCTTTTTACGGTTCATGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCATGCGTTATCCCATGATTCTGTGGATARCCGTATTACCGCCTTTGAGTGAGTTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACATGATTACGAATTCGAGCTCGGTACCCTGGAAAATGACAATATTTACAACAGAAGAAAAATTATGTTTTGGTCCACAAAATACAGAATCACAAAAAAGTCATTCTTTTCTAAGCAAATACTTTTTATAACTCAAAGAACTCAGAACCAGGGAAGGTGAACAGAGTACGAAGGCTAGATCGGGTCACTAGAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>224 155 132 83 82 64 52 50 42 24 22 21 21 17 11</canonical_bands>
                <polymorphic_bands>224 155 132 92 83 82 64 52 24 22 21 21 17 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTTTGCTCACATGTTCTT</pcr_primer_p1>
		<pcr_primer_p2>TTCTGTTGTAAATATTGTCATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>411</pcr_amplicon_size>
		<canonical_amplicon>CCTTTTGCTCACATGTTCTTTCATGCGTTATCCCATGATTCTGTGGATAGCCGTATTACCGCCTTTGAGTGAGTTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACATGATTACGAATTCGAGCTCGGTACCCTGGAAAATGACAATATTTACAACAGAA</canonical_amplicon>
		<polymorphic_amplicon>CCTTTTGCTCACATGTTCTTTCATGCGTTATCCCATGATTCTGTGGATARCCGTATTACCGCCTTTGAGTGAGTTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACATGATTACGAATTCGAGCTCGGTACCCTGGAAAATGACAATATTTACAACAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32854</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>739843</contig_pos>
        <strand></strand>
        <context>TTTGAGTGAG[T/C]TGATACCGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGCGTTATCCCATGATTCTGTGGATAGCCGTATTACCGCCTTTGAGTGAG</left_flank>
        <right_flank>TGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCG</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAGAAATTGATTTCATTGCGATCTCAACCTGAGTGAGACACTCTTCATTCTCTGAAGCCAAATGTTCACTTGATTCATCCAGGCAAACAATCAAATTATCTACACAATCTTCATAGTTTCGAGGATTCCGATCAGGAAGAAGTCTCATATAACAGATCATATGGTTGTATGCACAAGAAGAAAAAGTGGCTGCAACAAATCTTGTTTTATTTATTTGCCAAATAATCGTTACTGTTCATTTTTGGACATTTTTCATATAATTCCAAGTAGTTCTTTTCAACAGTCTTATTGAGGGCAGGAGCGTAACCGGCGATTGGTTTTTTTGCATCTAAAATGTTCTCAATCTACGTTGTTCTCTTTTTCCTAACGCTTAAACTAACTGGANNNNNNNNNNGCCTTTTTACGGTTCATGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCATGCGTTATCCCATGATTCTGTGGATAGCCGTATTACCGCCTTTGAGTGAGTTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACATGATTACGAATTCGAGCTCGGTACCCTGGAAAATGACAATATTTACAACAGAAGAAAAATTATGTTTTGGTCCACAAAATACAGAATCACAAAAAAGTCATTCTTTTCTAAGCAAATACTTTTTATAACTCAAAGAACTCAGAACCAGGGAAGGTGAACAGAGTACGAAGGCTAGATCGGGTCACTAGAACAACCATTAATAGTAGTGAATCTAAG</canonical>
            <polymorphic>CTCAGAAATTGATTTCATTGCGATCTCAACCTGAGTGAGACACTCTTCATTCTCTGAAGCCAAATGTTCACTTGATTCATCCAGGCAAACAATCAAATTATCTACACAATCTTCATAGTTTCGAGGATTCCGATCAGGAAGAAGTCTCATATAACAGATCATATGGTTGTATGCACAAGAAGAAAAAGTGGCTGCAACAAATCTTGTTTTATTTATTTGCCAAATAATCGTTACTGTTCATTTTTGGACATTTTTCATATAATTCCAAGTAGTTCTTTTCAACAGTCTTATTGAGGGCAGGAGCGTAACCGGCGATTGGTTTTTTTGCATCTAAAATGTTCTCAATCTACGTTGTTCTCTTTTTCCTAACGCTTAAACTAACTGGANNNNNNNNNNGCCTTTTTACGGTTCATGGCCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCATGCGTTATCCCATGATTCTGTGGATAGCCGTATTACCGCCTTTGAGTGAGYTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACATGATTACGAATTCGAGCTCGGTACCCTGGAAAATGACAATATTTACAACAGAAGAAAAATTATGTTTTGGTCCACAAAATACAGAATCACAAAAAAGTCATTCTTTTCTAAGCAAATACTTTTTATAACTCAAAGAACTCAGAACCAGGGAAGGTGAACAGAGTACGAAGGCTAGATCGGGTCACTAGAACAACCATTAATAGTAGTGAATCTAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTGCTCACATGTTCTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTCTGTTGTAAATATTGTCATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>410</pcr_amplicon_size>
		<canonical_amplicon>CTTTTGCTCACATGTTCTTTCATGCGTTATCCCATGATTCTGTGGATAGCCGTATTACCGCCTTTGAGTGAGTTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACATGATTACGAATTCGAGCTCGGTACCCTGGAAAATGACAATATTTACAACAGAA</canonical_amplicon>
		<polymorphic_amplicon>CTTTTGCTCACATGTTCTTTCATGCGTTATCCCATGATTCTGTGGATAGCCGTATTACCGCCTTTGAGTGAGYTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACATGATTACGAATTCGAGCTCGGTACCCTGGAAAATGACAATATTTACAACAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32855</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>740450</contig_pos>
        <strand></strand>
        <context>TTTTTCTAAC[G/T]AATCCAGGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTAGCATCGAGCTATGTGACATCATCTCCAAGCGGTTGAGTTTTTCTAAC</left_flank>
        <right_flank>AATCCAGGCAAATTGTAATTTTTAGAAATCTTCTGGGATATATTCCAATG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACATGATTACGAATTCGAGCTCGGTACCCTGGAAAATGACAATATTTACAACAGAAGAAAAATTATGTTTTGGTCCACAAAATACAGAATCACAAAAAAGTCATTCTTTTCTAAGCAAATACTTTTTATAACTCAAAGAACTCAGAACCAGGGAAGGTGAACAGAGTACGAAGGCTAGATCGGGTCACTAGAACAACCATTAATAGTAGTGAATCTAAGACTTTAAAACTTCAATTACGGAACCAGCCATGCTTCGTGGACTTCTCCTTCTACTAGTAGCATCGAGCTATGTGACATCATCTCCAAGCGGTTGAGTTTTTCTAACGAATCCAGGCAAATTGTAATTTTTAGAAATCTTCTGGGATATATTCCAATGCCTCATGGACTCCAATACTACTACTCCCAGTTATCAAAGAAAAATAACCAATGAAGAGCAGTTCGTAAATGTTGTGCTAGTTTCAAAAACAAAAGGAAACAACGTTTCAGCAAATTCAACTCTGAAAACTACATGAACTCGGATCAGTGGCAGTGTGGAGCTGGGAACACTGAGAAAATAACGAAGTATTTTAACTTCTGTTGGGATAAACTAGGTATTTATAGTCTATGAATATCTTCTGTATTTCTAAAGATTTGCAGCCGAAATGAACATGTGCTGTTCAATCCATGATGATTGCTATGGATTAGCAAGAGGAAGAAAAAAATGTGATCAGTCGTTTTTCGATTGCTTGAAAGTGAGTTCCAACAAAATGAGAAGATCATTCTTATAGTTAGTGTGTTTCAGAAATCTTTGGAATTTAAATCCTCTGGAATGTTGTGCTCGGGGATA</canonical>
            <polymorphic>ATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTATGACATGATTACGAATTCGAGCTCGGTACCCTGGAAAATGACAATATTTACAACAGAAGAAAAATTATGTTTTGGTCCACAAAATACAGAATCACAAAAAAGTCATTCTTTTCTAAGCAAATACTTTTTATAACTCAAAGAACTCAGAACCAGGGAAGGTGAACAGAGTACGAAGGCTAGATCGGGTCACTAGAACAACCATTAATAGTAGTGAATCTAAGACTTTAAAACTTCAATTACGGAACCAGCCATGCTTCGTGGACTTCTCCTTCTACTAGTAGCATCGAGCTATGTGACATCATCTCCAAGCGGTTGAGTTTTTCTAACKAATCCAGGCAAATTGTAATTTTTAGAAATCTTCTGGGATATATTCCAATGCCTCATGGACTCCAATACTACTACTCCCAGTTATCAAAGAAAAATAACCAATGAAGAGCAGTTCGTAAATGTTGTGCTAGTTTCAAAAACAAAAGGAAACAACGTTTCAGCAAATTCAACTCTGAAAACTACATGAACTCGGATCAGTGGCAGTGTGGAGCTGGGAACACTGAGAAAATAACGAAGTATTTTAACTTCTGTTGGGATAAACTAGGTATTTATAGTCTATGAATATCTTCTGTATTTCTAAAGATTTGCAGCCGAAATGAACATGTGCTGTTCAATCCATGATGATTGCTATGGATTAGCAAGAGGAAGAAAAAAATGTGATCAGTCGTTTTTCGATTGCTTGAAAGTGAGTTCCAACAAAATGAGAAGATCATTCTTATAGTTAGTGTGTTTCAGAAATCTTTGGAATTTAAATCCTCTGGAATGTTGTGCTCGGGGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>442 261 124 115 58</canonical_bands>
                <polymorphic_bands>442 261 173 124</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 261 124 115</canonical_bands>
                <polymorphic_bands>615 261 124</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTTAAAACTTCAATTACGGAAC</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTGAAACTAGCACAACATT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTTTAAAACTTCAATTACGGAACCAGCCATGCTTCGTGGACTTCTCCTTCTACTAGTAGCATCGAGCTATGTGACATCATCTCCAAGCGGTTGAGTTTTTCTAACGAATCCAGGCAAATTGTAATTTTTAGAAATCTTCTGGGATATATTCCAATGCCTCATGGACTCCAATACTACTACTCCCAGTTATCAAAGAAAAATAACCAATGAAGAGCAGTTCGTAAATGTTGTGCTAGTTTCAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>ACTTTAAAACTTCAATTACGGAACCAGCCATGCTTCGTGGACTTCTCCTTCTACTAGTAGCATCGAGCTATGTGACATCATCTCCAAGCGGTTGAGTTTTTCTAACKAATCCAGGCAAATTGTAATTTTTAGAAATCTTCTGGGATATATTCCAATGCCTCATGGACTCCAATACTACTACTCCCAGTTATCAAAGAAAAATAACCAATGAAGAGCAGTTCGTAAATGTTGTGCTAGTTTCAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32856</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>741328</contig_pos>
        <strand>+</strand>
        <context>ATCAAGTGAA[A/C]ATTTGGCTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGAAGATTGTGTAGATAATTTGATTGTTTGCCTGGATGAATCAAGTGAA</left_flank>
        <right_flank>ATTTGGCTTCAGAGAATGAAGAGTGTCTCACTCATGTTGAGATCACAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATCAGTCGTTTTTCGATTGCTTGAAAGTGAGTTCCAACAAAATGAGAAGATCATTCTTATAGTTAGTGTGTTTCAGAAATCTTTGGAATTTAAATCCTCTGGAATGTTGTGCTCGGGGATATGGACAAATACAGCCAAGGCTAGTATATGTTTTGCTGGAGTAATGTTTTATGGCGAATCCAGTTAGTTTAAGCGTTAGGAAAAAGAGAACAACGTAGATTGAGAACATTTTAGATGCAAAAAAACCAATCGCCGGTTACGCTCCTGCCCTCAATAAGACTGTTGAAAAGAACTACTTGGAATTATATGAAAAATGTCCAAAAATGAACAGTAACGATTATTTGGCAAATAAATAAAACAAGATTTGTTGCAGCCACTTTTTCTTCTTGTGCATACAACCATATGATCTGTTATATGAGACTTCTTCCTGATCGGAATCCTCGAAACTATGAAGATTGTGTAGATAATTTGATTGTTTGCCTGGATGAATCAAGTGAACATTTGGCTTCAGAGAATGAAGAGTGTCTCACTCATGTTGAGATCACAATGAAATCAATTTCTGAGAGTAAGAAGGAAGGAAGCATCAAATTCAATAGAAAATACAACTTTTAGATAGTAAGATTTCTGGAATCCCGACTACCAGAGAAGCTGTTGGACCAAAACATGCAAGTGGTTCTTCTTATTCCTCTCAATGAAAATTATATTTTCCAGGGATACAAGTTCATATACAGTTCCAAAAAGTTTAGGAAACTTGGATTCATGCATTCTCTACAACAATAGGAACGCATGCACTACTAGTGATCTGTAATAACTAACTTAATAAAAAATGAATCAGTGAATGAATGCTTGATCGAGAGAGACACATAATTAACAAAATTTTTTCACAAGTATTGACTGGAGGGTATGAAAGTATTCCATTATTATTTGATAGTCTGAAACATCTAAAAGTGCTTCTTAACAATAAAAGTAGTTCTCAAATTATTGGGATGGTGAAATGTC</canonical>
            <polymorphic>GATCAGTCGTTTTTCGATTGCTTGAAAGTGAGTTCCAACAAAATGAGAAGATCATTCTTATAGTTAGTGTGTTTCAGAAATCTTTGGAATTTAAATCCTCTGGAATGTTGTGCTCGGGGATATGGACAAATACAGCCAAGGCTAGTATATGTTTTGCTGGAGTAATGTTTTATGGCGAATCCAGTTAGTTTAAGCGTTAGGAAAAAGAGAACAACGTAGATTGAGAACATTTTAGATGCAAAAAAACCAATCGCCGGTTACGCTCCTGCCCTCAATAAGACTGTTGAAAAGAACTACTTGGAATTATATGAAAAATGTCCAAAAATGAACAGTAACGATTATTTGGCAAATAAATAAAACAAGATTTGTTGCAGCCACTTTTTCTTCTTGTGCATACAACCATATGATCTGTTATATGAGACTTCTTCCTGATCGGAATCCTCGAAACTATGAAGATTGTGTAGATAATTTGATTGTTTGCCTGGATGAATCAAGTGAAMATTTGGCTTCAGAGAATGAAGAGTGTCTCACTCATGTTGAGATCACAATGAAATCAATTTCTGAGAGTAAGAAGGAAGGAAGCATCAAATTCAATAGAAAATACAACTTTTAGATAGTAAGATTTCTGGAATCCCGACTACCAGAGAAGCTGTTGGACCAAAACATGCAAGTGGTTCTTCTTATTCCTCTCAATGAAAATTATATTTTCCAGGGATACAAGTTCATATACAGTTCCAAAAAGTTTAGGAAACTTGGATTCATGCATTCTCTACAACAATAGGAACGCATGCACTACTAGTGATCTGTAATAACTAACTTAATAAAAAATGAATCAGTGAATGAATGCTTGATCGAGAGAGACACATAATTAACAAAATTTTTTCACAAGTATTGACTGGAGGGTATGAAAGTATTCCATTATTATTTGATAGTCTGAAACATCTAAAAGTGCTTCTTAACAATAAAAGTAGTTCTCAAATTATTGGGATGGTGAAATGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGTCCAAAAATGAACAGTAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAATTGATTTCATTGTGATCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATGTCCAAAAATGAACAGTAACGATTATTTGGCAAATAAATAAAACAAGATTTGTTGCAGCCACTTTTTCTTCTTGTGCATACAACCATATGATCTGTTATATGAGACTTCTTCCTGATCGGAATCCTCGAAACTATGAAGATTGTGTAGATAATTTGATTGTTTGCCTGGATGAATCAAGTGAACATTTGGCTTCAGAGAATGAAGAGTGTCTCACTCATGTTGAGATCACAATGAAATCAATTTCT</canonical_amplicon>
		<polymorphic_amplicon>AAATGTCCAAAAATGAACAGTAACGATTATTTGGCAAATAAATAAAACAAGATTTGTTGCAGCCACTTTTTCTTCTTGTGCATACAACCATATGATCTGTTATATGAGACTTCTTCCTGATCGGAATCCTCGAAACTATGAAGATTGTGTAGATAATTTGATTGTTTGCCTGGATGAATCAAGTGAAMATTTGGCTTCAGAGAATGAAGAGTGTCTCACTCATGTTGAGATCACAATGAAATCAATTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32861</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>804516</contig_pos>
        <strand></strand>
        <context>TAGATGCAGA[C/T]GCAGAAGTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATCATCACCATCTGATGAAGATGAAGAGCGTTTCACATTAGATGCAGA</left_flank>
        <right_flank>GCAGAAGTTGCAGTTTCTATTGGTTGCGGTGATGGAAAGGTTTTAGCTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTCTGTACATGTAATCGTTCTAGTGCACTCCTTCAAGTCACTCGTATCCACAATATTCTGAGCATCTCTCTTGTCCATTGTCATTGAGAAGAACGTGGATACAGATTCATGATTTGAGCAGATGTCCTTCATCTCCGCTGTATTTTTCATCCAAAGGGGTGGACAGGAACCACAAATATCTGAATCAATATTCTAACGTTCATTTTGCATAAAGCATTGAGCTCACCAGGTTTCTCCACTTGAAGGGCTTCAAATAAATCACGGTCATCGTGAACATTGTTGCTATCTCGATGAGACACAGCCGGTTCTGGATGACTAACATTTTCATTTTCGTTTCCCTTTGTTTCACTTCTTGTGTTTGTTTTAACAGCAAACGTTTTGGCATTCTTTTTCGAACCTTCTCTACTGGCAACTCTCGGAGCTTCTACGGATTTATCAGAAACTGTGAAATCATCACCATCTGATGAAGATGAAGAGCGTTTCACATTAGATGCAGACGCAGAAGTTGCAGTTTCTATTGGTTGCGGTGATGGAAAGGTTTTAGCTTGACGGAACTGTTGAATATGAACAGAATAATCGTCTTGAGCAGGAAGAACAGGCATTCTGCGAAGAGGAGCATTGTCGAGTTGACCAGCAATGCTGACCGCCTCAGAAGGGATCGTCTTCAGGCACGCAGCCACAAATAATATCAATGAGTTGAGGAACATCACGATAAGAACAGAGTGAATGGCTGAATGATGCATGGTTGGGTTGGGCTATAGAAAATACGGGTCACACGTAGTGAAAGTGTGGAGAGACGAGACAGCCGGTCCACTCCAAGGTGACACTCTCTGGATTTTTGATAGTGTTGATAATGCAGATGTACTTTTCCTAAGTAGAGAAATTTTAATCAAGGAAATAGGACAGGAAAGGGAAGCATGTTGAAGAACATGAATAAAATGATGTGGTCACAAGAAGAAGATGGACTACGTTAATTACCGAAGATAGAAATGCCAGAA</canonical>
            <polymorphic>GGTTCTGTACATGTAATCGTTCTAGTGCACTCCTTCAAGTCACTCGTATCCACAATATTCTGAGCATCTCTCTTGTCCATTGTCATTGAGAAGAACGTGGATACAGATTCATGATTTGAGCAGATGTCCTTCATCTCCGCTGTATTTTTCATCCAAAGGGGTGGACAGGAACCACAAATATCTGAATCAATATTCTAACGTTCATTTTGCATAAAGCATTGAGCTCACCAGGTTTCTCCACTTGAAGGGCTTCAAATAAATCACGGTCATCGTGAACATTGTTGCTATCTCGATGAGACACAGCCGGTTCTGGATGACTAACATTTTCATTTTCGTTTCCCTTTGTTTCACTTCTTGTGTTTGTTTTAACAGCAAACGTTTTGGCATTCTTTTTCGAACCTTCTCTACTGGCAACTCTCGGAGCTTCTACGGATTTATCAGAAACTGTGAAATCATCACCATCTGATGAAGATGAAGAGCGTTTCACATTAGATGCAGAYGCAGAAGTTGCAGTTTCTATTGGTTGCGGTGATGGAAAGGTTTTAGCTTGACGGAACTGTTGAATATGAACAGAATAATCGTCTTGAGCAGGAAGAACAGGCATTCTGCGAAGAGGAGCATTGTCGAGTTGACCAGCAATGCTGACCGCCTCAGAAGGGATCGTCTTCAGGCACGCAGCCACAAATAATATCAATGAGTTGAGGAACATCACGATAAGAACAGAGTGAATGGCTGAATGATGCATGGTTGGGTTGGGCTATAGAAAATACGGGTCACACGTAGTGAAAGTGTGGAGAGACGAGACAGCCGGTCCACTCCAAGGTGACACTCTCTGGATTTTTGATAGTGTTGATAATGCAGATGTACTTTTCCTAAGTAGAGAAATTTTAATCAAGGAAATAGGACAGGAAAGGGAAGCATGTTGAAGAACATGAATAAAATGATGTGGTCACAAGAAGAAGATGGACTACGTTAATTACCGAAGATAGAAATGCCAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTCACTTCTTGTGTTTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTGCTCAAGACGATTATTCTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTTTCACTTCTTGTGTTTGTTTTAACAGCAAACGTTTTGGCATTCTTTTTCGAACCTTCTCTACTGGCAACTCTCGGAGCTTCTACGGATTTATCAGAAACTGTGAAATCATCACCATCTGATGAAGATGAAGAGCGTTTCACATTAGATGCAGACGCAGAAGTTGCAGTTTCTATTGGTTGCGGTGATGGAAAGGTTTTAGCTTGACGGAACTGTTGAATATGAACAGAATAATCGTCTTGAGCAG</canonical_amplicon>
		<polymorphic_amplicon>GTTTCACTTCTTGTGTTTGTTTTAACAGCAAACGTTTTGGCATTCTTTTTCGAACCTTCTCTACTGGCAACTCTCGGAGCTTCTACGGATTTATCAGAAACTGTGAAATCATCACCATCTGATGAAGATGAAGAGCGTTTCACATTAGATGCAGAYGCAGAAGTTGCAGTTTCTATTGGTTGCGGTGATGGAAAGGTTTTAGCTTGACGGAACTGTTGAATATGAACAGAATAATCGTCTTGAGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32862</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>804586</contig_pos>
        <strand></strand>
        <context>TTGAATATGA[A/G]CAGAATAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGGTTGCGGTGATGGAAAGGTTTTAGCTTGACGGAACTGTTGAATATGA</left_flank>
        <right_flank>CAGAATAATCGTCTTGAGCAGGAAGAACAGGCATTCTGCGAAGAGGAGCA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTGTCCATTGTCATTGAGAAGAACGTGGATACAGATTCATGATTTGAGCAGATGTCCTTCATCTCCGCTGTATTTTTCATCCAAAGGGGTGGACAGGAACCACAAATATCTGAATCAATATTCTAACGTTCATTTTGCATAAAGCATTGAGCTCACCAGGTTTCTCCACTTGAAGGGCTTCAAATAAATCACGGTCATCGTGAACATTGTTGCTATCTCGATGAGACACAGCCGGTTCTGGATGACTAACATTTTCATTTTCGTTTCCCTTTGTTTCACTTCTTGTGTTTGTTTTAACAGCAAACGTTTTGGCATTCTTTTTCGAACCTTCTCTACTGGCAACTCTCGGAGCTTCTACGGATTTATCAGAAACTGTGAAATCATCACCATCTGATGAAGATGAAGAGCGTTTCACATTAGATGCAGACGCAGAAGTTGCAGTTTCTATTGGTTGCGGTGATGGAAAGGTTTTAGCTTGACGGAACTGTTGAATATGAACAGAATAATCGTCTTGAGCAGGAAGAACAGGCATTCTGCGAAGAGGAGCATTGTCGAGTTGACCAGCAATGCTGACCGCCTCAGAAGGGATCGTCTTCAGGCACGCAGCCACAAATAATATCAATGAGTTGAGGAACATCACGATAAGAACAGAGTGAATGGCTGAATGATGCATGGTTGGGTTGGGCTATAGAAAATACGGGTCACACGTAGTGAAAGTGTGGAGAGACGAGACAGCCGGTCCACTCCAAGGTGACACTCTCTGGATTTTTGATAGTGTTGATAATGCAGATGTACTTTTCCTAAGTAGAGAAATTTTAATCAAGGAAATAGGACAGGAAAGGGAAGCATGTTGAAGAACATGAATAAAATGATGTGGTCACAAGAAGAAGATGGACTACGTTAATTACCGAAGATAGAAATGCCAGAATTGATGTTATGTCTTGCTAATTGCAGAAAAGAACGTTGCCGGTCAAAAAATTAATGGCTAATATACATAT</canonical>
            <polymorphic>TCTTGTCCATTGTCATTGAGAAGAACGTGGATACAGATTCATGATTTGAGCAGATGTCCTTCATCTCCGCTGTATTTTTCATCCAAAGGGGTGGACAGGAACCACAAATATCTGAATCAATATTCTAACGTTCATTTTGCATAAAGCATTGAGCTCACCAGGTTTCTCCACTTGAAGGGCTTCAAATAAATCACGGTCATCGTGAACATTGTTGCTATCTCGATGAGACACAGCCGGTTCTGGATGACTAACATTTTCATTTTCGTTTCCCTTTGTTTCACTTCTTGTGTTTGTTTTAACAGCAAACGTTTTGGCATTCTTTTTCGAACCTTCTCTACTGGCAACTCTCGGAGCTTCTACGGATTTATCAGAAACTGTGAAATCATCACCATCTGATGAAGATGAAGAGCGTTTCACATTAGATGCAGACGCAGAAGTTGCAGTTTCTATTGGTTGCGGTGATGGAAAGGTTTTAGCTTGACGGAACTGTTGAATATGARCAGAATAATCGTCTTGAGCAGGAAGAACAGGCATTCTGCGAAGAGGAGCATTGTCGAGTTGACCAGCAATGCTGACCGCCTCAGAAGGGATCGTCTTCAGGCACGCAGCCACAAATAATATCAATGAGTTGAGGAACATCACGATAAGAACAGAGTGAATGGCTGAATGATGCATGGTTGGGTTGGGCTATAGAAAATACGGGTCACACGTAGTGAAAGTGTGGAGAGACGAGACAGCCGGTCCACTCCAAGGTGACACTCTCTGGATTTTTGATAGTGTTGATAATGCAGATGTACTTTTCCTAAGTAGAGAAATTTTAATCAAGGAAATAGGACAGGAAAGGGAAGCATGTTGAAGAACATGAATAAAATGATGTGGTCACAAGAAGAAGATGGACTACGTTAATTACCGAAGATAGAAATGCCAGAATTGATGTTATGTCTTGCTAATTGCAGAAAAGAACGTTGCCGGTCAAAAAATTAATGGCTAATATACATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCATCTGATGAAGATGAAGAG</pcr_primer_p1>
		<pcr_primer_p2>CCTCAACTCATTGATATTATTTGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACCATCTGATGAAGATGAAGAGCGTTTCACATTAGATGCAGACGCAGAAGTTGCAGTTTCTATTGGTTGCGGTGATGGAAAGGTTTTAGCTTGACGGAACTGTTGAATATGAACAGAATAATCGTCTTGAGCAGGAAGAACAGGCATTCTGCGAAGAGGAGCATTGTCGAGTTGACCAGCAATGCTGACCGCCTCAGAAGGGATCGTCTTCAGGCACGCAGCCACAAATAATATCAATGAGTTGAGG</canonical_amplicon>
		<polymorphic_amplicon>ACCATCTGATGAAGATGAAGAGCGTTTCACATTAGATGCAGACGCAGAAGTTGCAGTTTCTATTGGTTGCGGTGATGGAAAGGTTTTAGCTTGACGGAACTGTTGAATATGARCAGAATAATCGTCTTGAGCAGGAAGAACAGGCATTCTGCGAAGAGGAGCATTGTCGAGTTGACCAGCAATGCTGACCGCCTCAGAAGGGATCGTCTTCAGGCACGCAGCCACAAATAATATCAATGAGTTGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32863</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>858134</contig_pos>
        <strand></strand>
        <context>ATCAGGGAGA[T/A]CTTTYGAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CATACAGCTTGATGATGGATTTCCTGCAACGATGTTCTTTATCAGGGAGA</left_flank>
        <right_flank>CTTTTGAATTTAACCTGTATTCGGAAGCTCTCCAGAAATAGACGAAGAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGACTCGTTAGATTTTGTTAAATAGAACTAGTTTTTTCTTTCTCCCAGGAAGAGCTACTGGGAACTAATTATTCTGAAACTCATGATAAATTTTCAGATTTCTGGAGGAGTCGGAGCCGCCTCGTCTGCTGCCCCAGCTGCCGGAGGAGCTGCACCAGCCGCTGACAGCAAGCCAGCCAAGAAGGAAGAGCCAAAGGAGGAATCTGATGACGATATGGGATTCGGCCTTTTCGATTAAAGCTTTTGGATGTTAATAAATTGTTATTGTTTTCTCGTGTTCGTCTGTTACATTTAACAATGCACAATGTATGTTATTGAGCGAAACTCGTGACAGAAATGGGAACTGATACACTTATTAGAAAGAATATCCATCATATTTTCACTGAGGTCTTCATAATTCGTGCTCCTGTATCCACTGATGCTTCCAACTTGAAGGCTCGGCTGAGACCATACAGCTTGATGATGGATTTCCTGCAACGATGTTCTTTATCAGGGAGATCTTTTGAATTTAACCTGTATTCGGAAGCTCTCCAGAAATAGACGAAGAAGTTTAGAGAAGCGTTGATTATCACAAGCCATCCCAATTGTCGATTGATCTCGGCTGTCACCTCGGGCGAAAACTTGCTTACCTGAAGTTTAAACAAATAATTGTGATTCCAGCTGCGAGAATTCAGGAATTCTCTGTGACATTTTTCAAATGAAAGTTTAGCTAAAATGGGTTCAAAATTTCTTCCCATAGCAAATTTCCCGTATTCGGTTTAGTAACAAAAAGAAAACTCATGATTCTCTTCCCGTTTGTTTCAGTAGAATTCACAAAAGTCTCATATGCTGATGTGCAAAAATCGGAACAGTGGAAGAGAAAATCCGGTTGCCGCGGTTCCGACCGAATTATCGCAATTAGCAAAAAAAATTAATAAAAAACTTGTCGAGATGCGACAGTAATTGAGAAAAGATACTGAAAATTTTAGGTCACGGTGGTTTTCGTTACTGGAACCGTTT</canonical>
            <polymorphic>TCGACTCGTTAGATTTTGTTAAATAGAACTAGTTTTTTCTTTCTCCCAGGAAGAGCTACTGGGAACTAATTATTCTGAAACTCATGATAAATTTTCAGATTTCTGGAGGAGTCGGAGCCGCCTCGTCTGCTGCCCCAGCTGCCGGAGGAGCTGCACCAGCCGCTGACAGCAAGCCAGCCAAGAAGGAAGAGCCAAAGGAGGAATCTGATGACGATATGGGATTCGGCCTTTTCGATTAAAGCTTTTGGATGTTAATAAATTGTTATTGTTTTCTCGTGTTCGTCTGTTACATTTAACAATGCACAATGTATGTTATTGAGCGAAACTCGTGACAGAAATGGGAACTGATACACTTATTAGAAAGAATATCCATCATATTTTCACTGAGGTCTTCATAATTCGTGCTCCTGTATCCACTGATGCTTCCAACTTGAAGGCTCGGCTGAGACCATACAGCTTGATGATGGATTTCCTGCAACGATGTTCTTTATCAGGGAGAWCTTTTGAATTTAACCTGTATTCGGAAGCTCTCCAGAAATAGACGAAGAAGTTTAGAGAAGCGTTGATTATCACAAGCCATCCCAATTGTCGATTGATCTCGGCTGTCACCTCGGGCGAAAACTTGCTTACCTGAAGTTTAAACAAATAATTGTGATTCCAGCTGCGAGAATTCAGGAATTCTCTGTGACATTTTTCAAATGAAAGTTTAGCTAAAATGGGTTCAAAATTTCTTCCCATAGCAAATTTCCCGTATTCGGTTTAGTAACAAAAAGAAAACTCATGATTCTCTTCCCGTTTGTTTCAGTAGAATTCACAAAAGTCTCATATGCTGATGTGCAAAAATCGGAACAGTGGAAGAGAAAATCCGGTTGCCGCGGTTCCGACCGAATTATCGCAATTAGCAAAAAAAATTAATAAAAAACTTGTCGAGATGCGACAGTAATTGAGAAAAGATACTGAAAATTTTAGGTCACGGTGGTTTTCGTTACTGGAACCGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>497 406 97</canonical_bands>
                <polymorphic_bands>594 406</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAATGGGAACTGATACACTTA</pcr_primer_p1>
		<pcr_primer_p2>GTGATAATCAACGCTTCTCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AGAAATGGGAACTGATACACTTATTAGAAAGAATATCCATCATATTTTCACTGAGGTCTTCATAATTCGTGCTCCTGTATCCACTGATGCTTCCAACTTGAAGGCTCGGCTGAGACCATACAGCTTGATGATGGATTTCCTGCAACGATGTTCTTTATCAGGGAGATCTTTTGAATTTAACCTGTATTCGGAAGCTCTCCAGAAATAGACGAAGAAGTTTAGAGAAGCGTTGATTATCAC</canonical_amplicon>
		<polymorphic_amplicon>AGAAATGGGAACTGATACACTTATTAGAAAGAATATCCATCATATTTTCACTGAGGTCTTCATAATTCGTGCTCCTGTATCCACTGATGCTTCCAACTTGAAGGCTCGGCTGAGACCATACAGCTTGATGATGGATTTCCTGCAACGATGTTCTTTATCAGGGAGAWCTTTTGAATTTAACCTGTATTCGGAAGCTCTCCAGAAATAGACGAAGAAGTTTAGAGAAGCGTTGATTATCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32864</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>858139</contig_pos>
        <strand></strand>
        <context>GGAGAWCTTT[T/C]GAATTTAACC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGCTTGATGATGGATTTCCTGCAACGATGTTCTTTATCAGGGAGATCTTT</left_flank>
        <right_flank>GAATTTAACCTGTATTCGGAAGCTCTCCAGAAATAGACGAAGAAGTTTAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTTAGATTTTGTTAAATAGAACTAGTTTTTTCTTTCTCCCAGGAAGAGCTACTGGGAACTAATTATTCTGAAACTCATGATAAATTTTCAGATTTCTGGAGGAGTCGGAGCCGCCTCGTCTGCTGCCCCAGCTGCCGGAGGAGCTGCACCAGCCGCTGACAGCAAGCCAGCCAAGAAGGAAGAGCCAAAGGAGGAATCTGATGACGATATGGGATTCGGCCTTTTCGATTAAAGCTTTTGGATGTTAATAAATTGTTATTGTTTTCTCGTGTTCGTCTGTTACATTTAACAATGCACAATGTATGTTATTGAGCGAAACTCGTGACAGAAATGGGAACTGATACACTTATTAGAAAGAATATCCATCATATTTTCACTGAGGTCTTCATAATTCGTGCTCCTGTATCCACTGATGCTTCCAACTTGAAGGCTCGGCTGAGACCATACAGCTTGATGATGGATTTCCTGCAACGATGTTCTTTATCAGGGAGATCTTTTGAATTTAACCTGTATTCGGAAGCTCTCCAGAAATAGACGAAGAAGTTTAGAGAAGCGTTGATTATCACAAGCCATCCCAATTGTCGATTGATCTCGGCTGTCACCTCGGGCGAAAACTTGCTTACCTGAAGTTTAAACAAATAATTGTGATTCCAGCTGCGAGAATTCAGGAATTCTCTGTGACATTTTTCAAATGAAAGTTTAGCTAAAATGGGTTCAAAATTTCTTCCCATAGCAAATTTCCCGTATTCGGTTTAGTAACAAAAAGAAAACTCATGATTCTCTTCCCGTTTGTTTCAGTAGAATTCACAAAAGTCTCATATGCTGATGTGCAAAAATCGGAACAGTGGAAGAGAAAATCCGGTTGCCGCGGTTCCGACCGAATTATCGCAATTAGCAAAAAAAATTAATAAAAAACTTGTCGAGATGCGACAGTAATTGAGAAAAGATACTGAAAATTTTAGGTCACGGTGGTTTTCGTTACTGGAACCGTTTGCCAC</canonical>
            <polymorphic>TCGTTAGATTTTGTTAAATAGAACTAGTTTTTTCTTTCTCCCAGGAAGAGCTACTGGGAACTAATTATTCTGAAACTCATGATAAATTTTCAGATTTCTGGAGGAGTCGGAGCCGCCTCGTCTGCTGCCCCAGCTGCCGGAGGAGCTGCACCAGCCGCTGACAGCAAGCCAGCCAAGAAGGAAGAGCCAAAGGAGGAATCTGATGACGATATGGGATTCGGCCTTTTCGATTAAAGCTTTTGGATGTTAATAAATTGTTATTGTTTTCTCGTGTTCGTCTGTTACATTTAACAATGCACAATGTATGTTATTGAGCGAAACTCGTGACAGAAATGGGAACTGATACACTTATTAGAAAGAATATCCATCATATTTTCACTGAGGTCTTCATAATTCGTGCTCCTGTATCCACTGATGCTTCCAACTTGAAGGCTCGGCTGAGACCATACAGCTTGATGATGGATTTCCTGCAACGATGTTCTTTATCAGGGAGATCTTTYGAATTTAACCTGTATTCGGAAGCTCTCCAGAAATAGACGAAGAAGTTTAGAGAAGCGTTGATTATCACAAGCCATCCCAATTGTCGATTGATCTCGGCTGTCACCTCGGGCGAAAACTTGCTTACCTGAAGTTTAAACAAATAATTGTGATTCCAGCTGCGAGAATTCAGGAATTCTCTGTGACATTTTTCAAATGAAAGTTTAGCTAAAATGGGTTCAAAATTTCTTCCCATAGCAAATTTCCCGTATTCGGTTTAGTAACAAAAAGAAAACTCATGATTCTCTTCCCGTTTGTTTCAGTAGAATTCACAAAAGTCTCATATGCTGATGTGCAAAAATCGGAACAGTGGAAGAGAAAATCCGGTTGCCGCGGTTCCGACCGAATTATCGCAATTAGCAAAAAAAATTAATAAAAAACTTGTCGAGATGCGACAGTAATTGAGAAAAGATACTGAAAATTTTAGGTCACGGTGGTTTTCGTTACTGGAACCGTTTGCCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACAGCTTGATGATGGATTTC</pcr_primer_p1>
		<pcr_primer_p2>ATTTGAAAAATGTCACAGAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATACAGCTTGATGATGGATTTCCTGCAACGATGTTCTTTATCAGGGAGATCTTTTGAATTTAACCTGTATTCGGAAGCTCTCCAGAAATAGACGAAGAAGTTTAGAGAAGCGTTGATTATCACAAGCCATCCCAATTGTCGATTGATCTCGGCTGTCACCTCGGGCGAAAACTTGCTTACCTGAAGTTTAAACAAATAATTGTGATTCCAGCTGCGAGAATTCAGGAATTCTCTGTGACATTTTTCAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATACAGCTTGATGATGGATTTCCTGCAACGATGTTCTTTATCAGGGAGATCTTTYGAATTTAACCTGTATTCGGAAGCTCTCCAGAAATAGACGAAGAAGTTTAGAGAAGCGTTGATTATCACAAGCCATCCCAATTGTCGATTGATCTCGGCTGTCACCTCGGGCGAAAACTTGCTTACCTGAAGTTTAAACAAATAATTGTGATTCCAGCTGCGAGAATTCAGGAATTCTCTGTGACATTTTTCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32865</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>858279</contig_pos>
        <strand></strand>
        <context>AGTTTAAACA[A/T]ATAATTGTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATCTCGGCTGTCACCTCGGGCGAAAACTTGCTTACCTGAAGTTTAAACA</left_flank>
        <right_flank>ATAATTGTGATTCCAGCTGCGAGAATTCAGGAATTCTCTGTGACATTTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGAGCTGCACCAGCCGCTGACAGCAAGCCAGCCAAGAAGGAAGAGCCAAAGGAGGAATCTGATGACGATATGGGATTCGGCCTTTTCGATTAAAGCTTTTGGATGTTAATAAATTGTTATTGTTTTCTCGTGTTCGTCTGTTACATTTAACAATGCACAATGTATGTTATTGAGCGAAACTCGTGACAGAAATGGGAACTGATACACTTATTAGAAAGAATATCCATCATATTTTCACTGAGGTCTTCATAATTCGTGCTCCTGTATCCACTGATGCTTCCAACTTGAAGGCTCGGCTGAGACCATACAGCTTGATGATGGATTTCCTGCAACGATGTTCTTTATCAGGGAGATCTTTTGAATTTAACCTGTATTCGGAAGCTCTCCAGAAATAGACGAAGAAGTTTAGAGAAGCGTTGATTATCACAAGCCATCCCAATTGTCGATTGATCTCGGCTGTCACCTCGGGCGAAAACTTGCTTACCTGAAGTTTAAACAAATAATTGTGATTCCAGCTGCGAGAATTCAGGAATTCTCTGTGACATTTTTCAAATGAAAGTTTAGCTAAAATGGGTTCAAAATTTCTTCCCATAGCAAATTTCCCGTATTCGGTTTAGTAACAAAAAGAAAACTCATGATTCTCTTCCCGTTTGTTTCAGTAGAATTCACAAAAGTCTCATATGCTGATGTGCAAAAATCGGAACAGTGGAAGAGAAAATCCGGTTGCCGCGGTTCCGACCGAATTATCGCAATTAGCAAAAAAAATTAATAAAAAACTTGTCGAGATGCGACAGTAATTGAGAAAAGATACTGAAAATTTTAGGTCACGGTGGTTTTCGTTACTGGAACCGTTTGCCACGCCCACAACTTTTTTCTTTCCCTGCTCATAGTTTTTAATACCAGAATAATACCGGCCATGTTTGTTGTTGTTACATGACAAGTTGTTGTTGTTGTTGAAACTTGAATATTCCCATAGTTGATCTTTAAGGGAAGGTTTTT</canonical>
            <polymorphic>AGGAGCTGCACCAGCCGCTGACAGCAAGCCAGCCAAGAAGGAAGAGCCAAAGGAGGAATCTGATGACGATATGGGATTCGGCCTTTTCGATTAAAGCTTTTGGATGTTAATAAATTGTTATTGTTTTCTCGTGTTCGTCTGTTACATTTAACAATGCACAATGTATGTTATTGAGCGAAACTCGTGACAGAAATGGGAACTGATACACTTATTAGAAAGAATATCCATCATATTTTCACTGAGGTCTTCATAATTCGTGCTCCTGTATCCACTGATGCTTCCAACTTGAAGGCTCGGCTGAGACCATACAGCTTGATGATGGATTTCCTGCAACGATGTTCTTTATCAGGGAGATCTTTTGAATTTAACCTGTATTCGGAAGCTCTCCAGAAATAGACGAAGAAGTTTAGAGAAGCGTTGATTATCACAAGCCATCCCAATTGTCGATTGATCTCGGCTGTCACCTCGGGCGAAAACTTGCTTACCTGAAGTTTAAACAWATAATTGTGATTCCAGCTGCGAGAATTCAGGAATTCTCTGTGACATTTTTCAAATGAAAGTTTAGCTAAAATGGGTTCAAAATTTCTTCCCATAGCAAATTTCCCGTATTCGGTTTAGTAACAAAAAGAAAACTCATGATTCTCTTCCCGTTTGTTTCAGTAGAATTCACAAAAGTCTCATATGCTGATGTGCAAAAATCGGAACAGTGGAAGAGAAAATCCGGTTGCCGCGGTTCCGACCGAATTATCGCAATTAGCAAAAAAAATTAATAAAAAACTTGTCGAGATGCGACAGTAATTGAGAAAAGATACTGAAAATTTTAGGTCACGGTGGTTTTCGTTACTGGAACCGTTTGCCACGCCCACAACTTTTTTCTTTCCCTGCTCATAGTTTTTAATACCAGAATAATACCGGCCATGTTTGTTGTTGTTACATGACAAGTTGTTGTTGTTGTTGAAACTTGAATATTCCCATAGTTGATCTTTAAGGGAAGGTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAGTTTAGAGAAGCGTTGAT</pcr_primer_p1>
		<pcr_primer_p2>GAGAATCATGAGTTTTCTTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAGAAGTTTAGAGAAGCGTTGATTATCACAAGCCATCCCAATTGTCGATTGATCTCGGCTGTCACCTCGGGCGAAAACTTGCTTACCTGAAGTTTAAACAAATAATTGTGATTCCAGCTGCGAGAATTCAGGAATTCTCTGTGACATTTTTCAAATGAAAGTTTAGCTAAAATGGGTTCAAAATTTCTTCCCATAGCAAATTTCCCGTATTCGGTTTAGTAACAAAAAGAAAACTCATGATTCTC</canonical_amplicon>
		<polymorphic_amplicon>AAGAAGTTTAGAGAAGCGTTGATTATCACAAGCCATCCCAATTGTCGATTGATCTCGGCTGTCACCTCGGGCGAAAACTTGCTTACCTGAAGTTTAAACAWATAATTGTGATTCCAGCTGCGAGAATTCAGGAATTCTCTGTGACATTTTTCAAATGAAAGTTTAGCTAAAATGGGTTCAAAATTTCTTCCCATAGCAAATTTCCCGTATTCGGTTTAGTAACAAAAAGAAAACTCATGATTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32866</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>864534</contig_pos>
        <strand>+</strand>
        <context>GTGCAAAATT[A/G]AGGACAAGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTAAAATCTGCTTGCTTACAGTTACCTTTCTTTTTTAGTGCAAAATT</left_flank>
        <right_flank>AGGACAAGAGCAAAAATTGAAAAAAAATGTTTTCGAGAAACTAATAAAAC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGAAAATATGGCAGGGCCCAAAGGTGGCCCGTTTTTGGCCCGTGGCCAGATTGAGTAGAAATCAACTGTCATGATAAACCTTTCAGACGGAGTGTGATAATGAAATCAGCTGAAATTAGAAAGCGCATGATTTTTAGGGCAAGAAAATATGCAGTTACCCCGCACTGATAGAGCAGTAATGGACTTGTCAGTCAGACAAAAAAAACAGAGGAGAGGATAAAGAGGAAATTCAGTTAAACNATGCCCCCAAGCCAACCCTAATTCTGATGGATGGCAAAAACAAAAAAAAATTGCCAAAAATTTGAAAGGATTTTGACAATAGCTAGAGAAAGATTTTTTCATACTGTACCAGCAGAGCTGTGTTGTTCATTAATTTTTCATTTTTCTTCAATTTTGTATATTTCAGATTTTAAAATCTGCTTGCTTACAGTTACCTTTCTTTTTTAGTGCAAAATTAAGGACAAGAGCAAAAATTGAAAAAAAATGTTTTCGAGAAACTAATAAAACTGTTTTTCCAGGCACATAAGTTAAACTACATTTACAGCTACAAGCTAGTCTTTCAAAGTGGAAACCTAATTCTCCAAATTTTCAGTTTAGCTCAAAATGTTTAGGAAGATAAGAAGAACAATTCGGCACACTAATAGTAAAAACAATAAAAAATTTAGTTTTAATTCGATTTTGACTCAAAAATGTAGACAATAAAGCAAAAAGGAAAGTGCTGAAATAGGTGGAGAATTGATAAAATGACAAGAGATTATAAAGGAGGGAATGGGAAGAGAATCAAATAAACACAAAAGTGACGAATACAAATAAATGAGTCATGAAAAAAGAGAGAAAAGTAAAGCTTAGTTGGTCAAATCGAAGAAGATTCATCAGAGGATGATTGAGAACTCGACGAGGCGTTCAGAGCGTCAACGAGTCGCATCACATCGATATCAGAATATTGTTGAGAAGTTG</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGAAAATATGGCAGGGCCCAAAGGTGGCCCGTTTTTGGCCCGTGGCCAGATTGAGTAGAAATCAACTGTCATGATAAACCTTTCAGACGGAGTGTGATAATGAAATCAGCTGAAATTAGAAAGCGCATGATTTTTAGGGCAAGAAAATATGCAGTTACCCCGCACTGATAGAGCAGTAATGGACTTGTCAGTCAGACAAAAAAAACAGAGGAGAGGATAAAGAGGAAATTCAGTTAAACNATGCCCCCAAGCCAACCCTAATTCTGATGGATGGCAAAAACAAAAAAAAATTGCCAAAAATTTGAAAGGATTTTGACAATAGCTAGAGAAAGATTTTTTCATACTGTACCAGCAGAGCTGTGTTGTTCATTAATTTTTCATTTTTCTTCAATTTTGTATATTTCAGATTTTAAAATCTGCTTGCTTACAGTTACCTTTCTTTTTTAGTGCAAAATTRAGGACAAGAGCAAAAATTGAAAAAAAATGTTTTCGAGAAACTAATAAAACTGTTTTTCCAGGCACATAAGTTAAACTACATTTACAGCTACAAGCTAGTCTTTCAAAGTGGAAACCTAATTCTCCAAATTTTCAGTTTAGCTCAAAATGTTTAGGAAGATAAGAAGAACAATTCGGCACACTAATAGTAAAAACAATAAAAAATTTAGTTTTAATTCGATTTTGACTCAAAAATGTAGACAATAAAGCAAAAAGGAAAGTGCTGAAATAGGTGGAGAATTGATAAAATGACAAGAGATTATAAAGGAGGGAATGGGAAGAGAATCAAATAAACACAAAAGTGACGAATACAAATAAATGAGTCATGAAAAAAGAGAGAAAAGTAAAGCTTAGTTGGTCAAATCGAAGAAGATTCATCAGAGGATGATTGAGAACTCGACGAGGCGTTCAGAGCGTCAACGAGTCGCATCACATCGATATCAGAATATTGTTGAGAAGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>289 277 140 136 73 45 40</canonical_bands>
                <polymorphic_bands>289 277 140 136 118 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGCTGTGTTGTTCATTAATTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTGAAAATTTGGAGAATTAGGT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GAGCTGTGTTGTTCATTAATTTTTCATTTTTCTTCAATTTTGTATATTTCAGATTTTAAAATCTGCTTGCTTACAGTTACCTTTCTTTTTTAGTGCAAAATTAAGGACAAGAGCAAAAATTGAAAAAAAATGTTTTCGAGAAACTAATAAAACTGTTTTTCCAGGCACATAAGTTAAACTACATTTACAGCTACAAGCTAGTCTTTCAAAGTGGAAACCTAATTCTCCAAATTTTCAGT</canonical_amplicon>
		<polymorphic_amplicon>GAGCTGTGTTGTTCATTAATTTTTCATTTTTCTTCAATTTTGTATATTTCAGATTTTAAAATCTGCTTGCTTACAGTTACCTTTCTTTTTTAGTGCAAAATTRAGGACAAGAGCAAAAATTGAAAAAAAATGTTTTCGAGAAACTAATAAAACTGTTTTTCCAGGCACATAAGTTAAACTACATTTACAGCTACAAGCTAGTCTTTCAAAGTGGAAACCTAATTCTCCAAATTTTCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32867</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>973632</contig_pos>
        <strand>+</strand>
        <context>AAAAGAAGGA[A/C]CCCGTTCATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATTTAAATGTTCCCGAAAACCTTTAGAAGGGCCCCCTGTAAAAGAAGGA</left_flank>
        <right_flank>CCCGTTCATAATGTATATTTTGAAATAAAATATTTCCGGCATTTTCAGTA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTATCATCATATTGAATGTAAAATATTTAGATTGAGATTTCAATAAATTTGATTTATTTGATTTTCTTAAACTCTTTATTGCATTGATTTTTGAAAAAAATCGTGAATGAGAACAAATCGGTGATAATGACTAGAATTTGATTTTGTTGATCTACTGAAACTTCTACTGAACCTGAAAGTGTTCAACCGGGGGACAACAATGGGAAAAAGAAAAACTGATGAAATTAGGATTTAACTGAAGGAACAGGAATCGGGGGAATTACGAAACTAAATGATTGAACTGAATCTGATACAATCGATTTGGGATAATATGCCAATTGTGTGAGAAGTTGATGAGAATATGCACGGATTCCAAGAACTTCGAGGTGGACAAGAGAAGTAAGACATGACAGAAGGCATTGGATGCCGTGGATTTCAATCTGAAATAAAAAATTTCCGTATTTTTTGCATTTAAATGTTCCCGAAAACCTTTAGAAGGGCCCCCTGTAAAAGAAGGAACCCGTTCATAATGTATATTTTGAAATAAAATATTTCCGGCATTTTCAGTAAGAAATATCTTAGAAATTCTACAATTTCACAGAAATATGAAAAAAAAAACTCTTTTTTGCTCAAAAGTTTGCTCAATTCCGGTGAAACTAATATATCAATTTCGAACGAAAAATTGCCGAATTTTCGATTGAAAAATTAGAAGAAATGTCCGGAAAAAATAAAAGGGTCACTTCTAATTAAAAGGCCCTGTAGTAAAGGGCCCTCCTGAGGTACCCTGGAACAATAGAAGAATCACTGGTGACAGTTCCTTCCTATACATGTTTTACGGCAGGTATTCTCCTAATATTACTTCGGAAAAATTTTGAAAAATTGCACGAAAAAATGAATGGCAAACCTTCAAACAATAGTTGATATCCAAAAACTGGAGTTTAGAGCACATTGTAATTTGTTGACAAACTGCATCATTCACATTGACAACTCCACTCAATGATAATTTTTTCAAATTTCTC</canonical>
            <polymorphic>TGGTATCATCATATTGAATGTAAAATATTTAGATTGAGATTTCAATAAATTTGATTTATTTGATTTTCTTAAACTCTTTATTGCATTGATTTTTGAAAAAAATCGTGAATGAGAACAAATCGGTGATAATGACTAGAATTTGATTTTGTTGATCTACTGAAACTTCTACTGAACCTGAAAGTGTTCAACCGGGGGACAACAATGGGAAAAAGAAAAACTGATGAAATTAGGATTTAACTGAAGGAACAGGAATCGGGGGAATTACGAAACTAAATGATTGAACTGAATCTGATACAATCGATTTGGGATAATATGCCAATTGTGTGAGAAGTTGATGAGAATATGCACGGATTCCAAGAACTTCGAGGTGGACAAGAGAAGTAAGACATGACAGAAGGCATTGGATGCCGTGGATTTCAATCTGAAATAAAAAATTTCCGTATTTTTTGCATTTAAATGTTCCCGAAAACCTTTAGAAGGGCCCCCTGTAAAAGAAGGAMCCCGTTCATAATGTATATTTTGAAATAAAATATTTCCGGCATTTTCAGTAAGAAATATCTTAGAAATTCTACAATTTCACAGAAATATGAAAAAAAAAACTCTTTTTTGCTCAAAAGTTTGCTCAATTCCGGTGAAACTAATATATCAATTTCGAACGAAAAATTGCCGAATTTTCGATTGAAAAATTAGAAGAAATGTCCGGAAAAAATAAAAGGGTCACTTCTAATTAAAAGGCCCTGTAGTAAAGGGCCCTCCTGAGGTACCCTGGAACAATAGAAGAATCACTGGTGACAGTTCCTTCCTATACATGTTTTACGGCAGGTATTCTCCTAATATTACTTCGGAAAAATTTTGAAAAATTGCACGAAAAAATGAATGGCAAACCTTCAAACAATAGTTGATATCCAAAAACTGGAGTTTAGAGCACATTGTAATTTGTTGACAAACTGCATCATTCACATTGACAACTCCACTCAATGATAATTTTTTCAAATTTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>498 321 181</canonical_bands>
                <polymorphic_bands>819 181</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACATGACAGAAGGCATTG</pcr_primer_p1>
		<pcr_primer_p2>TATATTAGTTTCACCGGAATTGA</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>AGACATGACAGAAGGCATTGGATGCCGTGGATTTCAATCTGAAATAAAAAATTTCCGTATTTTTTGCATTTAAATGTTCCCGAAAACCTTTAGAAGGGCCCCCTGTAAAAGAAGGAACCCGTTCATAATGTATATTTTGAAATAAAATATTTCCGGCATTTTCAGTAAGAAATATCTTAGAAATTCTACAATTTCACAGAAATATGAAAAAAAAAACTCTTTTTTGCTCAAAAGTTTGCTCAATTCCGGTGAAACTAATATA</canonical_amplicon>
		<polymorphic_amplicon>AGACATGACAGAAGGCATTGGATGCCGTGGATTTCAATCTGAAATAAAAAATTTCCGTATTTTTTGCATTTAAATGTTCCCGAAAACCTTTAGAAGGGCCCCCTGTAAAAGAAGGAMCCCGTTCATAATGTATATTTTGAAATAAAATATTTCCGGCATTTTCAGTAAGAAATATCTTAGAAATTCTACAATTTCACAGAAATATGAAAAAAAAAACTCTTTTTTGCTCAAAAGTTTGCTCAATTCCGGTGAAACTAATATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32868</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>973699</contig_pos>
        <strand>+</strand>
        <context>ATCTTAGAAA[C/T]TCTACAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTGAAATAAAATATTTCCGGCATTTTCAGTAAGAAATATCTTAGAAA</left_flank>
        <right_flank>TCTACAATTTCACAGAAATATGAAAAAAAAAACTCTTTTTTGCTCAAAAG</right_flank>
        <qual_score>149</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTAAACTCTTTATTGCATTGATTTTTGAAAAAAATCGTGAATGAGAACAAATCGGTGATAATGACTAGAATTTGATTTTGTTGATCTACTGAAACTTCTACTGAACCTGAAAGTGTTCAACCGGGGGACAACAATGGGAAAAAGAAAAACTGATGAAATTAGGATTTAACTGAAGGAACAGGAATCGGGGGAATTACGAAACTAAATGATTGAACTGAATCTGATACAATCGATTTGGGATAATATGCCAATTGTGTGAGAAGTTGATGAGAATATGCACGGATTCCAAGAACTTCGAGGTGGACAAGAGAAGTAAGACATGACAGAAGGCATTGGATGCCGTGGATTTCAATCTGAAATAAAAAATTTCCGTATTTTTTGCATTTAAATGTTCCCGAAAACCTTTAGAAGGGCCCCCTGTAAAAGAAGGAACCCGTTCATAATGTATATTTTGAAATAAAATATTTCCGGCATTTTCAGTAAGAAATATCTTAGAAATTCTACAATTTCACAGAAATATGAAAAAAAAAACTCTTTTTTGCTCAAAAGTTTGCTCAATTCCGGTGAAACTAATATATCAATTTCGAACGAAAAATTGCCGAATTTTCGATTGAAAAATTAGAAGAAATGTCCGGAAAAAATAAAAGGGTCACTTCTAATTAAAAGGCCCTGTAGTAAAGGGCCCTCCTGAGGTACCCTGGAACAATAGAAGAATCACTGGTGACAGTTCCTTCCTATACATGTTTTACGGCAGGTATTCTCCTAATATTACTTCGGAAAAATTTTGAAAAATTGCACGAAAAAATGAATGGCAAACCTTCAAACAATAGTTGATATCCAAAAACTGGAGTTTAGAGCACATTGTAATTTGTTGACAAACTGCATCATTCACATTGACAACTCCACTCAATGATAATTTTTTCAAATTTCTCAAACCTCCCAAAAATAACATGGATTTAATTGTGAGAGATTCACAATTATCCAGTAACAATTCTTCGA</canonical>
            <polymorphic>CTTAAACTCTTTATTGCATTGATTTTTGAAAAAAATCGTGAATGAGAACAAATCGGTGATAATGACTAGAATTTGATTTTGTTGATCTACTGAAACTTCTACTGAACCTGAAAGTGTTCAACCGGGGGACAACAATGGGAAAAAGAAAAACTGATGAAATTAGGATTTAACTGAAGGAACAGGAATCGGGGGAATTACGAAACTAAATGATTGAACTGAATCTGATACAATCGATTTGGGATAATATGCCAATTGTGTGAGAAGTTGATGAGAATATGCACGGATTCCAAGAACTTCGAGGTGGACAAGAGAAGTAAGACATGACAGAAGGCATTGGATGCCGTGGATTTCAATCTGAAATAAAAAATTTCCGTATTTTTTGCATTTAAATGTTCCCGAAAACCTTTAGAAGGGCCCCCTGTAAAAGAAGGAACCCGTTCATAATGTATATTTTGAAATAAAATATTTCCGGCATTTTCAGTAAGAAATATCTTAGAAAYTCTACAATTTCACAGAAATATGAAAAAAAAAACTCTTTTTTGCTCAAAAGTTTGCTCAATTCCGGTGAAACTAATATATCAATTTCGAACGAAAAATTGCCGAATTTTCGATTGAAAAATTAGAAGAAATGTCCGGAAAAAATAAAAGGGTCACTTCTAATTAAAAGGCCCTGTAGTAAAGGGCCCTCCTGAGGTACCCTGGAACAATAGAAGAATCACTGGTGACAGTTCCTTCCTATACATGTTTTACGGCAGGTATTCTCCTAATATTACTTCGGAAAAATTTTGAAAAATTGCACGAAAAAATGAATGGCAAACCTTCAAACAATAGTTGATATCCAAAAACTGGAGTTTAGAGCACATTGTAATTTGTTGACAAACTGCATCATTCACATTGACAACTCCACTCAATGATAATTTTTTCAAATTTCTCAAACCTCCCAAAAATAACATGGATTTAATTGTGAGAGATTCACAATTATCCAGTAACAATTCTTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>296 179 144 132 105 75 69</canonical_bands>
                <polymorphic_bands>296 237 179 144 75 69</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>132 123 115 88 75 69 58 52 49 41 35 34 23 17 15 14 14 10 10 10 8 8</canonical_bands>
                <polymorphic_bands>140 123 115 88 75 69 58 52 49 41 35 34 23 17 15 14 14 10 10 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTTCCCGAAAACCTTTAG</pcr_primer_p1>
		<pcr_primer_p2>GGACATTTCTTCTAATTTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATGTTCCCGAAAACCTTTAGAAGGGCCCCCTGTAAAAGAAGGAACCCGTTCATAATGTATATTTTGAAATAAAATATTTCCGGCATTTTCAGTAAGAAATATCTTAGAAATTCTACAATTTCACAGAAATATGAAAAAAAAAACTCTTTTTTGCTCAAAAGTTTGCTCAATTCCGGTGAAACTAATATATCAATTTCGAACGAAAAATTGCCGAATTTTCGATTGAAAAATTAGAAGAAATGTCC</canonical_amplicon>
		<polymorphic_amplicon>ATGTTCCCGAAAACCTTTAGAAGGGCCCCCTGTAAAAGAAGGAACCCGTTCATAATGTATATTTTGAAATAAAATATTTCCGGCATTTTCAGTAAGAAATATCTTAGAAAYTCTACAATTTCACAGAAATATGAAAAAAAAAACTCTTTTTTGCTCAAAAGTTTGCTCAATTCCGGTGAAACTAATATATCAATTTCGAACGAAAAATTGCCGAATTTTCGATTGAAAAATTAGAAGAAATGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32869</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>973722</contig_pos>
        <strand>+</strand>
        <context>CAGAAATATG[C/T]AAAAAAAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATTTTCAGTAAGAAATATCTTAGAAATTCTACAATTTCACAGAAATATG</left_flank>
        <right_flank>AAAAAAAAACTCTTTTTTGCTCAAAAGTTTGCTCAATTCCGGTGAAACTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGAAAAAAATCGTGAATGAGAACAAATCGGTGATAATGACTAGAATTTGATTTTGTTGATCTACTGAAACTTCTACTGAACCTGAAAGTGTTCAACCGGGGGACAACAATGGGAAAAAGAAAAACTGATGAAATTAGGATTTAACTGAAGGAACAGGAATCGGGGGAATTACGAAACTAAATGATTGAACTGAATCTGATACAATCGATTTGGGATAATATGCCAATTGTGTGAGAAGTTGATGAGAATATGCACGGATTCCAAGAACTTCGAGGTGGACAAGAGAAGTAAGACATGACAGAAGGCATTGGATGCCGTGGATTTCAATCTGAAATAAAAAATTTCCGTATTTTTTGCATTTAAATGTTCCCGAAAACCTTTAGAAGGGCCCCCTGTAAAAGAAGGAACCCGTTCATAATGTATATTTTGAAATAAAATATTTCCGGCATTTTCAGTAAGAAATATCTTAGAAATTCTACAATTTCACAGAAATATGAAAAAAAAAACTCTTTTTTGCTCAAAAGTTTGCTCAATTCCGGTGAAACTAATATATCAATTTCGAACGAAAAATTGCCGAATTTTCGATTGAAAAATTAGAAGAAATGTCCGGAAAAAATAAAAGGGTCACTTCTAATTAAAAGGCCCTGTAGTAAAGGGCCCTCCTGAGGTACCCTGGAACAATAGAAGAATCACTGGTGACAGTTCCTTCCTATACATGTTTTACGGCAGGTATTCTCCTAATATTACTTCGGAAAAATTTTGAAAAATTGCACGAAAAAATGAATGGCAAACCTTCAAACAATAGTTGATATCCAAAAACTGGAGTTTAGAGCACATTGTAATTTGTTGACAAACTGCATCATTCACATTGACAACTCCACTCAATGATAATTTTTTCAAATTTCTCAAACCTCCCAAAAATAACATGGATTTAATTGTGAGAGATTCACAATTATCCAGTAACAATTCTTCGATTTTCGGACATTCTTGAATTATC</canonical>
            <polymorphic>TTTTGAAAAAAATCGTGAATGAGAACAAATCGGTGATAATGACTAGAATTTGATTTTGTTGATCTACTGAAACTTCTACTGAACCTGAAAGTGTTCAACCGGGGGACAACAATGGGAAAAAGAAAAACTGATGAAATTAGGATTTAACTGAAGGAACAGGAATCGGGGGAATTACGAAACTAAATGATTGAACTGAATCTGATACAATCGATTTGGGATAATATGCCAATTGTGTGAGAAGTTGATGAGAATATGCACGGATTCCAAGAACTTCGAGGTGGACAAGAGAAGTAAGACATGACAGAAGGCATTGGATGCCGTGGATTTCAATCTGAAATAAAAAATTTCCGTATTTTTTGCATTTAAATGTTCCCGAAAACCTTTAGAAGGGCCCCCTGTAAAAGAAGGAACCCGTTCATAATGTATATTTTGAAATAAAATATTTCCGGCATTTTCAGTAAGAAATATCTTAGAAATTCTACAATTTCACAGAAATATGYAAAAAAAAACTCTTTTTTGCTCAAAAGTTTGCTCAATTCCGGTGAAACTAATATATCAATTTCGAACGAAAAATTGCCGAATTTTCGATTGAAAAATTAGAAGAAATGTCCGGAAAAAATAAAAGGGTCACTTCTAATTAAAAGGCCCTGTAGTAAAGGGCCCTCCTGAGGTACCCTGGAACAATAGAAGAATCACTGGTGACAGTTCCTTCCTATACATGTTTTACGGCAGGTATTCTCCTAATATTACTTCGGAAAAATTTTGAAAAATTGCACGAAAAAATGAATGGCAAACCTTCAAACAATAGTTGATATCCAAAAACTGGAGTTTAGAGCACATTGTAATTTGTTGACAAACTGCATCATTCACATTGACAACTCCACTCAATGATAATTTTTTCAAATTTCTCAAACCTCCCAAAAATAACATGGATTTAATTGTGAGAGATTCACAATTATCCAGTAACAATTCTTCGATTTTCGGACATTCTTGAATTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGCATTTTCAGTAAGAAATA</pcr_primer_p1>
		<pcr_primer_p2>CCAGTGATTCTTCTATTGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CGGCATTTTCAGTAAGAAATATCTTAGAAATTCTACAATTTCACAGAAATATGAAAAAAAAAACTCTTTTTTGCTCAAAAGTTTGCTCAATTCCGGTGAAACTAATATATCAATTTCGAACGAAAAATTGCCGAATTTTCGATTGAAAAATTAGAAGAAATGTCCGGAAAAAATAAAAGGGTCACTTCTAATTAAAAGGCCCTGTAGTAAAGGGCCCTCCTGAGGTACCCTGGAACAATAGAAGAATCACTGG</canonical_amplicon>
		<polymorphic_amplicon>CGGCATTTTCAGTAAGAAATATCTTAGAAATTCTACAATTTCACAGAAATATGYAAAAAAAAACTCTTTTTTGCTCAAAAGTTTGCTCAATTCCGGTGAAACTAATATATCAATTTCGAACGAAAAATTGCCGAATTTTCGATTGAAAAATTAGAAGAAATGTCCGGAAAAAATAAAAGGGTCACTTCTAATTAAAAGGCCCTGTAGTAAAGGGCCCTCCTGAGGTACCCTGGAACAATAGAAGAATCACTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32870</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>973754</contig_pos>
        <strand></strand>
        <context>CAAAAGTTTG[C/T]TCAATTCCGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATTTCACAGAAATATGAAAAAAAAAACTCTTTTTTGCTCAAAAGTTTG</left_flank>
        <right_flank>TCAATTCCGGTGAAACTAATATATCAATTTCGAACGAAAAATTGCCGAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGATAATGACTAGAATTTGATTTTGTTGATCTACTGAAACTTCTACTGAACCTGAAAGTGTTCAACCGGGGGACAACAATGGGAAAAAGAAAAACTGATGAAATTAGGATTTAACTGAAGGAACAGGAATCGGGGGAATTACGAAACTAAATGATTGAACTGAATCTGATACAATCGATTTGGGATAATATGCCAATTGTGTGAGAAGTTGATGAGAATATGCACGGATTCCAAGAACTTCGAGGTGGACAAGAGAAGTAAGACATGACAGAAGGCATTGGATGCCGTGGATTTCAATCTGAAATAAAAAATTTCCGTATTTTTTGCATTTAAATGTTCCCGAAAACCTTTAGAAGGGCCCCCTGTAAAAGAAGGAACCCGTTCATAATGTATATTTTGAAATAAAATATTTCCGGCATTTTCAGTAAGAAATATCTTAGAAATTCTACAATTTCACAGAAATATGAAAAAAAAAACTCTTTTTTGCTCAAAAGTTTGCTCAATTCCGGTGAAACTAATATATCAATTTCGAACGAAAAATTGCCGAATTTTCGATTGAAAAATTAGAAGAAATGTCCGGAAAAAATAAAAGGGTCACTTCTAATTAAAAGGCCCTGTAGTAAAGGGCCCTCCTGAGGTACCCTGGAACAATAGAAGAATCACTGGTGACAGTTCCTTCCTATACATGTTTTACGGCAGGTATTCTCCTAATATTACTTCGGAAAAATTTTGAAAAATTGCACGAAAAAATGAATGGCAAACCTTCAAACAATAGTTGATATCCAAAAACTGGAGTTTAGAGCACATTGTAATTTGTTGACAAACTGCATCATTCACATTGACAACTCCACTCAATGATAATTTTTTCAAATTTCTCAAACCTCCCAAAAATAACATGGATTTAATTGTGAGAGATTCACAATTATCCAGTAACAATTCTTCGATTTTCGGACATTCTTGAATTATCAGAGATAGTGCATCGTCTCGAAATCCATCTCG</canonical>
            <polymorphic>GTGATAATGACTAGAATTTGATTTTGTTGATCTACTGAAACTTCTACTGAACCTGAAAGTGTTCAACCGGGGGACAACAATGGGAAAAAGAAAAACTGATGAAATTAGGATTTAACTGAAGGAACAGGAATCGGGGGAATTACGAAACTAAATGATTGAACTGAATCTGATACAATCGATTTGGGATAATATGCCAATTGTGTGAGAAGTTGATGAGAATATGCACGGATTCCAAGAACTTCGAGGTGGACAAGAGAAGTAAGACATGACAGAAGGCATTGGATGCCGTGGATTTCAATCTGAAATAAAAAATTTCCGTATTTTTTGCATTTAAATGTTCCCGAAAACCTTTAGAAGGGCCCCCTGTAAAAGAAGGAACCCGTTCATAATGTATATTTTGAAATAAAATATTTCCGGCATTTTCAGTAAGAAATATCTTAGAAATTCTACAATTTCACAGAAATATGAAAAAAAAAACTCTTTTTTGCTCAAAAGTTTGYTCAATTCCGGTGAAACTAATATATCAATTTCGAACGAAAAATTGCCGAATTTTCGATTGAAAAATTAGAAGAAATGTCCGGAAAAAATAAAAGGGTCACTTCTAATTAAAAGGCCCTGTAGTAAAGGGCCCTCCTGAGGTACCCTGGAACAATAGAAGAATCACTGGTGACAGTTCCTTCCTATACATGTTTTACGGCAGGTATTCTCCTAATATTACTTCGGAAAAATTTTGAAAAATTGCACGAAAAAATGAATGGCAAACCTTCAAACAATAGTTGATATCCAAAAACTGGAGTTTAGAGCACATTGTAATTTGTTGACAAACTGCATCATTCACATTGACAACTCCACTCAATGATAATTTTTTCAAATTTCTCAAACCTCCCAAAAATAACATGGATTTAATTGTGAGAGATTCACAATTATCCAGTAACAATTCTTCGATTTTCGGACATTCTTGAATTATCAGAGATAGTGCATCGTCTCGAAATCCATCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGCATTTTCAGTAAGAAATA</pcr_primer_p1>
		<pcr_primer_p2>CCAGTGATTCTTCTATTGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CGGCATTTTCAGTAAGAAATATCTTAGAAATTCTACAATTTCACAGAAATATGAAAAAAAAAACTCTTTTTTGCTCAAAAGTTTGCTCAATTCCGGTGAAACTAATATATCAATTTCGAACGAAAAATTGCCGAATTTTCGATTGAAAAATTAGAAGAAATGTCCGGAAAAAATAAAAGGGTCACTTCTAATTAAAAGGCCCTGTAGTAAAGGGCCCTCCTGAGGTACCCTGGAACAATAGAAGAATCACTGG</canonical_amplicon>
		<polymorphic_amplicon>CGGCATTTTCAGTAAGAAATATCTTAGAAATTCTACAATTTCACAGAAATATGAAAAAAAAAACTCTTTTTTGCTCAAAAGTTTGYTCAATTCCGGTGAAACTAATATATCAATTTCGAACGAAAAATTGCCGAATTTTCGATTGAAAAATTAGAAGAAATGTCCGGAAAAAATAAAAGGGTCACTTCTAATTAAAAGGCCCTGTAGTAAAGGGCCCTCCTGAGGTACCCTGGAACAATAGAAGAATCACTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32871</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>973866</contig_pos>
        <strand>+</strand>
        <context>CTAATTAAAA[C/G]GCCCTGTAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAATTAGAAGAAATGTCCGGAAAAAATAAAAGGGTCACTTCTAATTAAAA</left_flank>
        <right_flank>GCCCTGTAGTAAAGGGCCCTCCTGAGGTACCCTGGAACAATAGAAGAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACTGAAGGAACAGGAATCGGGGGAATTACGAAACTAAATGATTGAACTGAATCTGATACAATCGATTTGGGATAATATGCCAATTGTGTGAGAAGTTGATGAGAATATGCACGGATTCCAAGAACTTCGAGGTGGACAAGAGAAGTAAGACATGACAGAAGGCATTGGATGCCGTGGATTTCAATCTGAAATAAAAAATTTCCGTATTTTTTGCATTTAAATGTTCCCGAAAACCTTTAGAAGGGCCCCCTGTAAAAGAAGGAACCCGTTCATAATGTATATTTTGAAATAAAATATTTCCGGCATTTTCAGTAAGAAATATCTTAGAAATTCTACAATTTCACAGAAATATGAAAAAAAAAACTCTTTTTTGCTCAAAAGTTTGCTCAATTCCGGTGAAACTAATATATCAATTTCGAACGAAAAATTGCCGAATTTTCGATTGAAAAATTAGAAGAAATGTCCGGAAAAAATAAAAGGGTCACTTCTAATTAAAAGGCCCTGTAGTAAAGGGCCCTCCTGAGGTACCCTGGAACAATAGAAGAATCACTGGTGACAGTTCCTTCCTATACATGTTTTACGGCAGGTATTCTCCTAATATTACTTCGGAAAAATTTTGAAAAATTGCACGAAAAAATGAATGGCAAACCTTCAAACAATAGTTGATATCCAAAAACTGGAGTTTAGAGCACATTGTAATTTGTTGACAAACTGCATCATTCACATTGACAACTCCACTCAATGATAATTTTTTCAAATTTCTCAAACCTCCCAAAAATAACATGGATTTAATTGTGAGAGATTCACAATTATCCAGTAACAATTCTTCGATTTTCGGACATTCTTGAATTATCAGAGATAGTGCATCGTCTCGAAATCCATCTCGATTATTTATCAATGATAAGTGCCTGAAAATGTTGATTTTGTACCTCTCAATTATTTGTGAAGACTTAAGTAATTACTTCAGATTTTTCAGCTTTGAAATTTTTCGACAATCC</canonical>
            <polymorphic>TAACTGAAGGAACAGGAATCGGGGGAATTACGAAACTAAATGATTGAACTGAATCTGATACAATCGATTTGGGATAATATGCCAATTGTGTGAGAAGTTGATGAGAATATGCACGGATTCCAAGAACTTCGAGGTGGACAAGAGAAGTAAGACATGACAGAAGGCATTGGATGCCGTGGATTTCAATCTGAAATAAAAAATTTCCGTATTTTTTGCATTTAAATGTTCCCGAAAACCTTTAGAAGGGCCCCCTGTAAAAGAAGGAACCCGTTCATAATGTATATTTTGAAATAAAATATTTCCGGCATTTTCAGTAAGAAATATCTTAGAAATTCTACAATTTCACAGAAATATGAAAAAAAAAACTCTTTTTTGCTCAAAAGTTTGCTCAATTCCGGTGAAACTAATATATCAATTTCGAACGAAAAATTGCCGAATTTTCGATTGAAAAATTAGAAGAAATGTCCGGAAAAAATAAAAGGGTCACTTCTAATTAAAASGCCCTGTAGTAAAGGGCCCTCCTGAGGTACCCTGGAACAATAGAAGAATCACTGGTGACAGTTCCTTCCTATACATGTTTTACGGCAGGTATTCTCCTAATATTACTTCGGAAAAATTTTGAAAAATTGCACGAAAAAATGAATGGCAAACCTTCAAACAATAGTTGATATCCAAAAACTGGAGTTTAGAGCACATTGTAATTTGTTGACAAACTGCATCATTCACATTGACAACTCCACTCAATGATAATTTTTTCAAATTTCTCAAACCTCCCAAAAATAACATGGATTTAATTGTGAGAGATTCACAATTATCCAGTAACAATTCTTCGATTTTCGGACATTCTTGAATTATCAGAGATAGTGCATCGTCTCGAAATCCATCTCGATTATTTATCAATGATAAGTGCCTGAAAATGTTGATTTTGTACCTCTCAATTATTTGTGAAGACTTAAGTAATTACTTCAGATTTTTCAGCTTTGAAATTTTTCGACAATCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>484 254 247 15</canonical_bands>
                <polymorphic_bands>484 269 247</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>462 254 247 22 15</canonical_bands>
                <polymorphic_bands>462 269 247 22</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>486 255 245 14</canonical_bands>
                <polymorphic_bands>486 269 245</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>483 255 248 14</canonical_bands>
                <polymorphic_bands>483 269 248</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATTGAAAAATTAGAAGAAATG</pcr_primer_p1>
		<pcr_primer_p2>CTCTAAACTCCAGTTTTTGGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGATTGAAAAATTAGAAGAAATGTCCGGAAAAAATAAAAGGGTCACTTCTAATTAAAAGGCCCTGTAGTAAAGGGCCCTCCTGAGGTACCCTGGAACAATAGAAGAATCACTGGTGACAGTTCCTTCCTATACATGTTTTACGGCAGGTATTCTCCTAATATTACTTCGGAAAAATTTTGAAAAATTGCACGAAAAAATGAATGGCAAACCTTCAAACAATAGTTGATATCCAAAAACTGGAGTTTAGAG</canonical_amplicon>
		<polymorphic_amplicon>CGATTGAAAAATTAGAAGAAATGTCCGGAAAAAATAAAAGGGTCACTTCTAATTAAAASGCCCTGTAGTAAAGGGCCCTCCTGAGGTACCCTGGAACAATAGAAGAATCACTGGTGACAGTTCCTTCCTATACATGTTTTACGGCAGGTATTCTCCTAATATTACTTCGGAAAAATTTTGAAAAATTGCACGAAAAAATGAATGGCAAACCTTCAAACAATAGTTGATATCCAAAAACTGGAGTTTAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32872</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>975154</contig_pos>
        <strand></strand>
        <context>tgtattagaa[G/A]ggccGACTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATACTTTTTTCTAAATTGCTGAAACAAATACCGTAAAACCTGTATTAGAA</left_flank>
        <right_flank>GGCCGACTCTTCCATTCCTTCAAGAAACTGTCTTTCAGACAACGCATTTG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACTTCGTCCCTGAAAGCAGGAAACTGTAAAAACCTAAACAAGCGAGGCACCAACCGAGATTTCGAAATATTTCAATTTGGTGCATTTCTTGAAAAGTGTCTCAAATGATTTCCTTATTATTGTGGCAACATCCCACTCGGTGCATTCAATCATTGAATTTGTTATGCTAATTTCCTCAATACTCTCTGGTAAATCACCGAAGCTTCCAATTGCTCCAGCCGAAATACGACATCTGAAAGAAGATATAATTGAAAAATAGAGTTGAGAATTCATGAAAGAATTCCTACCTGTCAATGGAAAATCTCTTCAGTTTTTTAGCATTTTCGTTTATAGCTTGCATGATTCTTTGTCTGATTTCGACGTCACTGGAGACAACTGCATATTTCGAGTTTGCAGGACGAATTTTAAGATCCAAAGTTTGAAGATTATAAGAACATTGAGCTGCAATATACTTTTTTCTAAATTGCTGAAACAAATACCGTAAAACCTGTATTAGAAGGGCCGACTCTTCCATTCCTTCAAGAAACTGTCTTTCAGACAACGCATTTGGATGGGGCCCTCCTTTTTTTCAAAGCCACTCATGGAGAGCCCTTCTATTAGAGGAACCCTTCTATTGAAGGAGCTCTTTTAATATAGGTTTTACAATTTTCTAAAAAACTCACCAATAACTGAAGCCATTGCTGTTGGATTCTGAATAACTGCTGGACAGTCTAACTCGATATCCAAATTTTTCTTGGATTTCAAAGATTTACTGACCAGGGAATTCATCTTTGAACTAGTCCTTCTTATTCTAACCGCATCTTCTATACACAATCTATCAATTATTTCCAGCCATGCCTGATCCATGTTACCCTGCAAGAATAAATAAAAATAATAGAAAAAAAATAAATTGAAGAAGAGGAACAGAAGAAACAAAAGCACTGGGTAGAATTGTATCAGAAGAAGCATCATCATGAATCATATATTTTCAATCAAATCATACATGATTCATGGCGATCA</canonical>
            <polymorphic>GACTTCGTCCCTGAAAGCAGGAAACTGTAAAAACCTAAACAAGCGAGGCACCAACCGAGATTTCGAAATATTTCAATTTGGTGCATTTCTTGAAAAGTGTCTCAAATGATTTCCTTATTATTGTGGCAACATCCCACTCGGTGCATTCAATCATTGAATTTGTTATGCTAATTTCCTCAATACTCTCTGGTAAATCACCGAAGCTTCCAATTGCTCCAGCCGAAATACGACATCTGAAAGAAGATATAATTGAAAAATAGAGTTGAGAATTCATGAAAGAATTCCTACCTGTCAATGGAAAATCTCTTCAGTTTTTTAGCATTTTCGTTTATAGCTTGCATGATTCTTTGTCTGATTTCGACGTCACTGGAGACAACTGCATATTTCGAGTTTGCAGGACGAATTTTAAGATCCAAAGTTTGAAGATTATAAGAACATTGAGCTGCAATATACTTTTTTCTAAATTGCTGAAACAAATACCGTAAAACCTGTATTAGAARGGCCGACTCTTCCATTCCTTCAAGAAACTGTCTTTCAGACAACGCATTTGGATGGGGCCCTCCTTTTTTTCAAAGCCACTCATGGAGAGCCCTTCTATTAGAGGAACCCTTCTATTGAAGGAGCTCTTTTAATATAGGTTTTACAATTTTCTAAAAAACTCACCAATAACTGAAGCCATTGCTGTTGGATTCTGAATAACTGCTGGACAGTCTAACTCGATATCCAAATTTTTCTTGGATTTCAAAGATTTACTGACCAGGGAATTCATCTTTGAACTAGTCCTTCTTATTCTAACCGCATCTTCTATACACAATCTATCAATTATTTCCAGCCATGCCTGATCCATGTTACCCTGCAAGAATAAATAAAAATAATAGAAAAAAAATAAATTGAAGAAGAGGAACAGAAGAAACAAAAGCACTGGGTAGAATTGTATCAGAAGAAGCATCATCATGAATCATATATTTTCAATCAAATCATACATGATTCATGGCGATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 445 55</canonical_bands>
                <polymorphic_bands>555 445</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACATTGAGCTGCAATATACTTT</pcr_primer_p1>
		<pcr_primer_p2>GCTTCAGTTATTGGTGAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AACATTGAGCTGCAATATACTTTTTTCTAAATTGCTGAAACAAATACCGTAAAACCTGTATTAGAAGGGCCGACTCTTCCATTCCTTCAAGAAACTGTCTTTCAGACAACGCATTTGGATGGGGCCCTCCTTTTTTTCAAAGCCACTCATGGAGAGCCCTTCTATTAGAGGAACCCTTCTATTGAAGGAGCTCTTTTAATATAGGTTTTACAATTTTCTAAAAAACTCACCAATAACTGAAGC</canonical_amplicon>
		<polymorphic_amplicon>AACATTGAGCTGCAATATACTTTTTTCTAAATTGCTGAAACAAATACCGTAAAACCTGTATTAGAARGGCCGACTCTTCCATTCCTTCAAGAAACTGTCTTTCAGACAACGCATTTGGATGGGGCCCTCCTTTTTTTCAAAGCCACTCATGGAGAGCCCTTCTATTAGAGGAACCCTTCTATTGAAGGAGCTCTTTTAATATAGGTTTTACAATTTTCTAAAAAACTCACCAATAACTGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32873</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>1002214</contig_pos>
        <strand>+</strand>
        <context>GTAAAGCTCT[C/T]TGAAATCGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGCCTTCATGATCAGTTGCGTTTTGTCCACTCCGACTCCGTAAAGCTCT</left_flank>
        <right_flank>TGAAATCGATTTTGAACGAAAAATGAGAAAAGGCTTGCAAAACCTCAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAGTTTCCTTCAGATTTCTCGACAATCTTCTGAAGAACGCTGTCCGGCATGTTCAAGTTCTCCTTCTGAATCACTTTTCTCAACACTTTCTCAACTTCGACATCAGTTGGAGCTGGCACGTTGATGATGATACAACGGGATTGGAGCGGTTCGATAATACGAGAAAGTGATTCACAACACAATACAATTTTACAATTGTTCGCGTATTTCTCCATTGTTCGACGCAAACCGTGCTGAGCATCACGAGTAAGCGAATCGGCTTCGCAAAGAACGACTACTTTGAACGATTTTTGAGACGATGCTTCGATTTGAGACGTCTGAGCCATTTCTTTCACGAGATCCTGCACTACTACCCGATCGTAAATTCCAACATCCGACGGTGTCATTTCAACATGATAGTTACTCGAAACAGTTTGAATCTCGAGTTTTCGATTCGAAGGAGTTGTAAAAGCCTTCATGATCAGTTGCGTTTTGTCCACTCCGACTCCGTAAAGCTCTCTGAAATCGATTTTGAACGAAAAATGAGAAAAGGCTTGCAAAACCTCAAGAGACACTTGATTCGAGTCTTTTTACCAGCACCACTCGGTCCACAAAACAAGAGATGAGGCATACAATCAGCAGATAGGAATTTCAAGTGTTTGGCTTGCTCCAAGTGATAGTCGACCCCGTCCTTTCCTAACAACTCCTTAGGACGATACTTATCGACCCATAACGCCATTATGATCTGAAACTGAAGCTTAAAAACAAAAAAATTGACAATATTTCATAAAAACTAATTGGAGTGAATATGATAGCTGTCAAACAAACAGCAGTTAGCCATAACATCATGTACAATTAATCAAAAAGTATATTTTAACCAAAAGTGTGACAGTGAAATATTCGACAAAAGACGCCGAATTATAATTGACATGTACATTCAAAGGTGCACAAAAGTGGAGTTAGACAATGTAAAAATTTCAAAATTATTGTATGTTCATTTTTCTCTTCAGTGCGATGATA</canonical>
            <polymorphic>CAAGTTTCCTTCAGATTTCTCGACAATCTTCTGAAGAACGCTGTCCGGCATGTTCAAGTTCTCCTTCTGAATCACTTTTCTCAACACTTTCTCAACTTCGACATCAGTTGGAGCTGGCACGTTGATGATGATACAACGGGATTGGAGCGGTTCGATAATACGAGAAAGTGATTCACAACACAATACAATTTTACAATTGTTCGCGTATTTCTCCATTGTTCGACGCAAACCGTGCTGAGCATCACGAGTAAGCGAATCGGCTTCGCAAAGAACGACTACTTTGAACGATTTTTGAGACGATGCTTCGATTTGAGACGTCTGAGCCATTTCTTTCACGAGATCCTGCACTACTACCCGATCGTAAATTCCAACATCCGACGGTGTCATTTCAACATGATAGTTACTCGAAACAGTTTGAATCTCGAGTTTTCGATTCGAAGGAGTTGTAAAAGCCTTCATGATCAGTTGCGTTTTGTCCACTCCGACTCCGTAAAGCTCTYTGAAATCGATTTTGAACGAAAAATGAGAAAAGGCTTGCAAAACCTCAAGAGACACTTGATTCGAGTCTTTTTACCAGCACCACTCGGTCCACAAAACAAGAGATGAGGCATACAATCAGCAGATAGGAATTTCAAGTGTTTGGCTTGCTCCAAGTGATAGTCGACCCCGTCCTTTCCTAACAACTCCTTAGGACGATACTTATCGACCCATAACGCCATTATGATCTGAAACTGAAGCTTAAAAACAAAAAAATTGACAATATTTCATAAAAACTAATTGGAGTGAATATGATAGCTGTCAAACAAACAGCAGTTAGCCATAACATCATGTACAATTAATCAAAAAGTATATTTTAACCAAAAGTGTGACAGTGAAATATTCGACAAAAGACGCCGAATTATAATTGACATGTACATTCAAAGGTGCACAAAAGTGGAGTTAGACAATGTAAAAATTTCAAAATTATTGTATGTTCATTTTTCTCTTCAGTGCGATGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>273 252 226 107 56 36 19 18 13</canonical_bands>
                <polymorphic_bands>273 252 244 107 56 36 19 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAAAAGCCTTCATGATCAGTT</pcr_primer_p1>
		<pcr_primer_p2>CTAAGGAGTTGTTAGGAAAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTAAAAGCCTTCATGATCAGTTGCGTTTTGTCCACTCCGACTCCGTAAAGCTCTCTGAAATCGATTTTGAACGAAAAATGAGAAAAGGCTTGCAAAACCTCAAGAGACACTTGATTCGAGTCTTTTTACCAGCACCACTCGGTCCACAAAACAAGAGATGAGGCATACAATCAGCAGATAGGAATTTCAAGTGTTTGGCTTGCTCCAAGTGATAGTCGACCCCGTCCTTTCCTAACAACTCCTTAG</canonical_amplicon>
		<polymorphic_amplicon>GTAAAAGCCTTCATGATCAGTTGCGTTTTGTCCACTCCGACTCCGTAAAGCTCTYTGAAATCGATTTTGAACGAAAAATGAGAAAAGGCTTGCAAAACCTCAAGAGACACTTGATTCGAGTCTTTTTACCAGCACCACTCGGTCCACAAAACAAGAGATGAGGCATACAATCAGCAGATAGGAATTTCAAGTGTTTGGCTTGCTCCAAGTGATAGTCGACCCCGTCCTTTCCTAACAACTCCTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32874</snp_id>
        <super_contig>c007700706.Contig5</super_contig>
        <contig_pos>1011871</contig_pos>
        <strand>+</strand>
        <context>TGAATCCGAG[A/G]CCACTTCCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCCAATGTCCAGTTAATGTGGCAACGTTTGATCCAACGATGAATCCGAG</left_flank>
        <right_flank>CCACTTCCGACTGGAATTGCGAAATAGAAGATCATAAATACAGTACTCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTTTCCGTTTGGAATCTTTTGAATGGTCCCCATCCGGCAACTAGCCATTTCGAGAGCATCGATCCGAATATAACTCCAATAAGTCCTCCGGCTGTTGTGATTGCTCCGAAATAGAGTGCAACTCTGTCTTTATCAGTTGTTGGTAGTTCTTTTGTATCATTGAGTCCTTGGTGCCAAGCAGTTAAATGCTGGATTACGGTAGGCTCCCACCAAGAAAGAGTTCCTGATACAAAAACAAGAGCAGTGTATCCCCAAGTACAAGCAACGAGAGTTGGGGTTTTGAGAAGAATGACAAGATCTTCGAGGTACGTGGTGTTGGTAGCGACTACAGTATCTTTGGCATCACCATTTGCTCTATCCGCTGCTCCTCTTTCCGGTTCATAAGTAAAAAGAACCAAAGCAATCATCACAATGAATCCAGCGATTGCCGACACTCGAATTCCCCATTGCCAATGTCCAGTTAATGTGGCAACGTTTGATCCAACGATGAATCCGAGACCACTTCCGACTGGAATTGCGAAATAGAAGATCATAAATACAGTACTCCTCTTTTGTCCATTGAACATATCAGAAATGAGAGAAGGAGCAACATTGGAATACGATGCTTCTCCGATTCCAACAAAACTTCTCAAAACTAAAAACAACCAGAAATGCTGCAAATAAATATTTATCAGTTATTTATAAACTTTGCTCTTACATTTGCCGGGACAAAACTGGATCCCAACACTGCACCCAGCCAAATTCCGACTCCAATAATCATGATCCATTTTCGATTGAATCGGTCCCCAAGATATCCACAAATCGGGGAGAAAACCATGAAAGAAATGAGGAAAACAGTTTGAATTAGACCTCCCAAACTGTCAGATATGTTATAATAGGTCTGAACAGCAGTAAGAACACCAGCCACAGTGTATCTATCCACATAATTAAGAAGATTCACAACGAAGAGTACGGTAACGCTGATGTAGTCCTCTTGTGAGTTAACCATTCTGTAATTG</canonical>
            <polymorphic>CTCTTTCCGTTTGGAATCTTTTGAATGGTCCCCATCCGGCAACTAGCCATTTCGAGAGCATCGATCCGAATATAACTCCAATAAGTCCTCCGGCTGTTGTGATTGCTCCGAAATAGAGTGCAACTCTGTCTTTATCAGTTGTTGGTAGTTCTTTTGTATCATTGAGTCCTTGGTGCCAAGCAGTTAAATGCTGGATTACGGTAGGCTCCCACCAAGAAAGAGTTCCTGATACAAAAACAAGAGCAGTGTATCCCCAAGTACAAGCAACGAGAGTTGGGGTTTTGAGAAGAATGACAAGATCTTCGAGGTACGTGGTGTTGGTAGCGACTACAGTATCTTTGGCATCACCATTTGCTCTATCCGCTGCTCCTCTTTCCGGTTCATAAGTAAAAAGAACCAAAGCAATCATCACAATGAATCCAGCGATTGCCGACACTCGAATTCCCCATTGCCAATGTCCAGTTAATGTGGCAACGTTTGATCCAACGATGAATCCGAGRCCACTTCCGACTGGAATTGCGAAATAGAAGATCATAAATACAGTACTCCTCTTTTGTCCATTGAACATATCAGAAATGAGAGAAGGAGCAACATTGGAATACGATGCTTCTCCGATTCCAACAAAACTTCTCAAAACTAAAAACAACCAGAAATGCTGCAAATAAATATTTATCAGTTATTTATAAACTTTGCTCTTACATTTGCCGGGACAAAACTGGATCCCAACACTGCACCCAGCCAAATTCCGACTCCAATAATCATGATCCATTTTCGATTGAATCGGTCCCCAAGATATCCACAAATCGGGGAGAAAACCATGAAAGAAATGAGGAAAACAGTTTGAATTAGACCTCCCAAACTGTCAGATATGTTATAATAGGTCTGAACAGCAGTAAGAACACCAGCCACAGTGTATCTATCCACATAATTAAGAAGATTCACAACGAAGAGTACGGTAACGCTGATGTAGTCCTCTTGTGAGTTAACCATTCTGTAATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTACAGTATCTTTGGCATCAC</pcr_primer_p1>
		<pcr_primer_p2>GATATGTTCAATGGACAAAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GACTACAGTATCTTTGGCATCACCATTTGCTCTATCCGCTGCTCCTCTTTCCGGTTCATAAGTAAAAAGAACCAAAGCAATCATCACAATGAATCCAGCGATTGCCGACACTCGAATTCCCCATTGCCAATGTCCAGTTAATGTGGCAACGTTTGATCCAACGATGAATCCGAGACCACTTCCGACTGGAATTGCGAAATAGAAGATCATAAATACAGTACTCCTCTTTTGTCCATTGAACATATC</canonical_amplicon>
		<polymorphic_amplicon>GACTACAGTATCTTTGGCATCACCATTTGCTCTATCCGCTGCTCCTCTTTCCGGTTCATAAGTAAAAAGAACCAAAGCAATCATCACAATGAATCCAGCGATTGCCGACACTCGAATTCCCCATTGCCAATGTCCAGTTAATGTGGCAACGTTTGATCCAACGATGAATCCGAGRCCACTTCCGACTGGAATTGCGAAATAGAAGATCATAAATACAGTACTCCTCTTTTGTCCATTGAACATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32875</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>77344</contig_pos>
        <strand>+</strand>
        <context>AAGATTTGAA[C/T]AATGTACTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCCTTTGTATTTTTATTGTGGACTCTAACAAGAATTAACAAGATTTGAA</left_flank>
        <right_flank>AATGTACTGTTTCTTAAAATAAGAATTACAAAAAACGCGAAGAGCTCGCT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTACCGGCTGGAATCGTCCCTGTTGGTCGAGTCAGCCAGCAAGATGAGGTGGCCTTGAACGAACGATTCGAAACACGATCTGACAAGCTGCTCAAATGGCAAAAAGAGGCTGCTCAAAACACAAGGGGACTTCCAAATGCTGTGCAGGTATTTAAAAAATCTATTTATGAATAGAATGCTTCAATTATTCCAGGTAGTCGCTGGTATGGGTCGAGAAGAAGATTGTCTCCGCGTAATGAGAATGATCGAAGATGTCTCAGAAGGTGTTCCGAGGCTCACATGGGACCCTGCCACGAGAACATTCCTCAATGCTCAATAACAGTTATCCCATCCTGTAATTTTGTTTTACATTCTTCTATTCAAACTGACTAACATGCTATGTCGATTCTCATATTCTTGTACAATCTTTATTCTCGACTCAGTATTTTCTTAACCTTTTTTCCTGATATCCTTTGTATTTTTATTGTGGACTCTAACAAGAATTAACAAGATTTGAATAATGTACTGTTTCTTAAAATAAGAATTACAAAAAACGCGAAGAGCTCGCTGAAATTCTTATCAGTTTTGCAATGCACCATTAAAGGAGGCGAGACAACAAAAATTTTGTGGGACAGTTTGGGGGACGAAATGGCGCCGCGCTTATGTAGGCCATCGGTCGTCAGCCGTGTTTGCGCCCCTTAGCTTAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCAAGAGGTCAACCCCTCATGGGGGTTCGCTAGGCAAAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAACACTTAGAGTTATAATATATTCAGTAAATGGATCTCTTGGTATTCGATGCGAAACGAAACAAAAATCCATCAGAAACACCCGTATGCTTTCATAAAGAAGACCTTCACGAGATGTTAGGAAATCAAAAGATTGTCGCCTACTTCGTAGTTGATTGGTTTTATTAAATCTTTCAACTTGAAAATTTCAGAATGGAGGTCTTG</canonical>
            <polymorphic>ATGTACCGGCTGGAATCGTCCCTGTTGGTCGAGTCAGCCAGCAAGATGAGGTGGCCTTGAACGAACGATTCGAAACACGATCTGACAAGCTGCTCAAATGGCAAAAAGAGGCTGCTCAAAACACAAGGGGACTTCCAAATGCTGTGCAGGTATTTAAAAAATCTATTTATGAATAGAATGCTTCAATTATTCCAGGTAGTCGCTGGTATGGGTCGAGAAGAAGATTGTCTCCGCGTAATGAGAATGATCGAAGATGTCTCAGAAGGTGTTCCGAGGCTCACATGGGACCCTGCCACGAGAACATTCCTCAATGCTCAATAACAGTTATCCCATCCTGTAATTTTGTTTTACATTCTTCTATTCAAACTGACTAACATGCTATGTCGATTCTCATATTCTTGTACAATCTTTATTCTCGACTCAGTATTTTCTTAACCTTTTTTCCTGATATCCTTTGTATTTTTATTGTGGACTCTAACAAGAATTAACAAGATTTGAAYAATGTACTGTTTCTTAAAATAAGAATTACAAAAAACGCGAAGAGCTCGCTGAAATTCTTATCAGTTTTGCAATGCACCATTAAAGGAGGCGAGACAACAAAAATTTTGTGGGACAGTTTGGGGGACGAAATGGCGCCGCGCTTATGTAGGCCATCGGTCGTCAGCCGTGTTTGCGCCCCTTAGCTTAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCAAGAGGTCAACCCCTCATGGGGGTTCGCTAGGCAAAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAACACTTAGAGTTATAATATATTCAGTAAATGGATCTCTTGGTATTCGATGCGAAACGAAACAAAAATCCATCAGAAACACCCGTATGCTTTCATAAAGAAGACCTTCACGAGATGTTAGGAAATCAAAAGATTGTCGCCTACTTCGTAGTTGATTGGTTTTATTAAATCTTTCAACTTGAAAATTTCAGAATGGAGGTCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCCCATCCTGTAATTTTGTT</pcr_primer_p1>
		<pcr_primer_p2>GCATTGCAAAACTGATAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATCCCATCCTGTAATTTTGTTTTACATTCTTCTATTCAAACTGACTAACATGCTATGTCGATTCTCATATTCTTGTACAATCTTTATTCTCGACTCAGTATTTTCTTAACCTTTTTTCCTGATATCCTTTGTATTTTTATTGTGGACTCTAACAAGAATTAACAAGATTTGAATAATGTACTGTTTCTTAAAATAAGAATTACAAAAAACGCGAAGAGCTCGCTGAAATTCTTATCAGTTTTGCAATGC</canonical_amplicon>
		<polymorphic_amplicon>TATCCCATCCTGTAATTTTGTTTTACATTCTTCTATTCAAACTGACTAACATGCTATGTCGATTCTCATATTCTTGTACAATCTTTATTCTCGACTCAGTATTTTCTTAACCTTTTTTCCTGATATCCTTTGTATTTTTATTGTGGACTCTAACAAGAATTAACAAGATTTGAAYAATGTACTGTTTCTTAAAATAAGAATTACAAAAAACGCGAAGAGCTCGCTGAAATTCTTATCAGTTTTGCAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32876</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>77387</contig_pos>
        <strand>+</strand>
        <context>AAACGCGAAG[A/G]GCTCGCTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTGAATAATGTACTGTTTCTTAAAATAAGAATTACAAAAAACGCGAAG</left_flank>
        <right_flank>GCTCGCTGAAATTCTTATCAGTTTTGCAATGCACCATTAAAGGAGGCGAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATGAGGTGGCCTTGAACGAACGATTCGAAACACGATCTGACAAGCTGCTCAAATGGCAAAAAGAGGCTGCTCAAAACACAAGGGGACTTCCAAATGCTGTGCAGGTATTTAAAAAATCTATTTATGAATAGAATGCTTCAATTATTCCAGGTAGTCGCTGGTATGGGTCGAGAAGAAGATTGTCTCCGCGTAATGAGAATGATCGAAGATGTCTCAGAAGGTGTTCCGAGGCTCACATGGGACCCTGCCACGAGAACATTCCTCAATGCTCAATAACAGTTATCCCATCCTGTAATTTTGTTTTACATTCTTCTATTCAAACTGACTAACATGCTATGTCGATTCTCATATTCTTGTACAATCTTTATTCTCGACTCAGTATTTTCTTAACCTTTTTTCCTGATATCCTTTGTATTTTTATTGTGGACTCTAACAAGAATTAACAAGATTTGAATAATGTACTGTTTCTTAAAATAAGAATTACAAAAAACGCGAAGAGCTCGCTGAAATTCTTATCAGTTTTGCAATGCACCATTAAAGGAGGCGAGACAACAAAAATTTTGTGGGACAGTTTGGGGGACGAAATGGCGCCGCGCTTATGTAGGCCATCGGTCGTCAGCCGTGTTTGCGCCCCTTAGCTTAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCAAGAGGTCAACCCCTCATGGGGGTTCGCTAGGCAAAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAACACTTAGAGTTATAATATATTCAGTAAATGGATCTCTTGGTATTCGATGCGAAACGAAACAAAAATCCATCAGAAACACCCGTATGCTTTCATAAAGAAGACCTTCACGAGATGTTAGGAAATCAAAAGATTGTCGCCTACTTCGTAGTTGATTGGTTTTATTAAATCTTTCAACTTGAAAATTTCAGAATGGAGGTCTTGTACAAATATTCGATGAACAGGCTTCTCGAATTCTTTTCGAAAA</canonical>
            <polymorphic>AGATGAGGTGGCCTTGAACGAACGATTCGAAACACGATCTGACAAGCTGCTCAAATGGCAAAAAGAGGCTGCTCAAAACACAAGGGGACTTCCAAATGCTGTGCAGGTATTTAAAAAATCTATTTATGAATAGAATGCTTCAATTATTCCAGGTAGTCGCTGGTATGGGTCGAGAAGAAGATTGTCTCCGCGTAATGAGAATGATCGAAGATGTCTCAGAAGGTGTTCCGAGGCTCACATGGGACCCTGCCACGAGAACATTCCTCAATGCTCAATAACAGTTATCCCATCCTGTAATTTTGTTTTACATTCTTCTATTCAAACTGACTAACATGCTATGTCGATTCTCATATTCTTGTACAATCTTTATTCTCGACTCAGTATTTTCTTAACCTTTTTTCCTGATATCCTTTGTATTTTTATTGTGGACTCTAACAAGAATTAACAAGATTTGAATAATGTACTGTTTCTTAAAATAAGAATTACAAAAAACGCGAAGRGCTCGCTGAAATTCTTATCAGTTTTGCAATGCACCATTAAAGGAGGCGAGACAACAAAAATTTTGTGGGACAGTTTGGGGGACGAAATGGCGCCGCGCTTATGTAGGCCATCGGTCGTCAGCCGTGTTTGCGCCCCTTAGCTTAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCAAGAGGTCAACCCCTCATGGGGGTTCGCTAGGCAAAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAACACTTAGAGTTATAATATATTCAGTAAATGGATCTCTTGGTATTCGATGCGAAACGAAACAAAAATCCATCAGAAACACCCGTATGCTTTCATAAAGAAGACCTTCACGAGATGTTAGGAAATCAAAAGATTGTCGCCTACTTCGTAGTTGATTGGTTTTATTAAATCTTTCAACTTGAAAATTTCAGAATGGAGGTCTTGTACAAATATTCGATGAACAGGCTTCTCGAATTCTTTTCGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>455 330 139 46 30</canonical_bands>
                <polymorphic_bands>594 330 46 30</polymorphic_bands>
            </assay>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>268 233 165 106 75 35 25 22 22 19 14 11 5</canonical_bands>
                <polymorphic_bands>374 233 165 75 35 25 22 22 19 14 11 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTAACAAGAATTAACAAGATTTGA</pcr_primer_p1>
		<pcr_primer_p2>GTTTAAAGGAGGCCAGACAT</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>TCTAACAAGAATTAACAAGATTTGAATAATGTACTGTTTCTTAAAATAAGAATTACAAAAAACGCGAAGAGCTCGCTGAAATTCTTATCAGTTTTGCAATGCACCATTAAAGGAGGCGAGACAACAAAAATTTTGTGGGACAGTTTGGGGGACGAAATGGCGCCGCGCTTATGTAGGCCATCGGTCGTCAGCCGTGTTTGCGCCCCTTAGCTTAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCAAGAGGTCAACCCCTCATGGGGGTTCGCTAGGCAAAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAAC</canonical_amplicon>
		<polymorphic_amplicon>TCTAACAAGAATTAACAAGATTTGAATAATGTACTGTTTCTTAAAATAAGAATTACAAAAAACGCGAAGRGCTCGCTGAAATTCTTATCAGTTTTGCAATGCACCATTAAAGGAGGCGAGACAACAAAAATTTTGTGGGACAGTTTGGGGGACGAAATGGCGCCGCGCTTATGTAGGCCATCGGTCGTCAGCCGTGTTTGCGCCCCTTAGCTTAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCAAGAGGTCAACCCCTCATGGGGGTTCGCTAGGCAAAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32877</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>77435</contig_pos>
        <strand>+</strand>
        <context>TAAAGGAGGC[A/G]AGACAACAWA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAGCTCGCTGAAATTCTTATCAGTTTTGCAATGCACCATTAAAGGAGGC</left_flank>
        <right_flank>AGACAACAAAAATTTTGTGGGACAGTTTGGGGGACGAAATGGCGCCGCGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCAAATGGCAAAAAGAGGCTGCTCAAAACACAAGGGGACTTCCAAATGCTGTGCAGGTATTTAAAAAATCTATTTATGAATAGAATGCTTCAATTATTCCAGGTAGTCGCTGGTATGGGTCGAGAAGAAGATTGTCTCCGCGTAATGAGAATGATCGAAGATGTCTCAGAAGGTGTTCCGAGGCTCACATGGGACCCTGCCACGAGAACATTCCTCAATGCTCAATAACAGTTATCCCATCCTGTAATTTTGTTTTACATTCTTCTATTCAAACTGACTAACATGCTATGTCGATTCTCATATTCTTGTACAATCTTTATTCTCGACTCAGTATTTTCTTAACCTTTTTTCCTGATATCCTTTGTATTTTTATTGTGGACTCTAACAAGAATTAACAAGATTTGAATAATGTACTGTTTCTTAAAATAAGAATTACAAAAAACGCGAAGAGCTCGCTGAAATTCTTATCAGTTTTGCAATGCACCATTAAAGGAGGCGAGACAACAAAAATTTTGTGGGACAGTTTGGGGGACGAAATGGCGCCGCGCTTATGTAGGCCATCGGTCGTCAGCCGTGTTTGCGCCCCTTAGCTTAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCAAGAGGTCAACCCCTCATGGGGGTTCGCTAGGCAAAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAACACTTAGAGTTATAATATATTCAGTAAATGGATCTCTTGGTATTCGATGCGAAACGAAACAAAAATCCATCAGAAACACCCGTATGCTTTCATAAAGAAGACCTTCACGAGATGTTAGGAAATCAAAAGATTGTCGCCTACTTCGTAGTTGATTGGTTTTATTAAATCTTTCAACTTGAAAATTTCAGAATGGAGGTCTTGTACAAATATTCGATGAACAGGCTTCTCGAATTCTTTTCGAAAATGCTGGAATTGGACAATGGTTGGATGATGATAGAAACGAAAGTCGAGA</canonical>
            <polymorphic>GCTCAAATGGCAAAAAGAGGCTGCTCAAAACACAAGGGGACTTCCAAATGCTGTGCAGGTATTTAAAAAATCTATTTATGAATAGAATGCTTCAATTATTCCAGGTAGTCGCTGGTATGGGTCGAGAAGAAGATTGTCTCCGCGTAATGAGAATGATCGAAGATGTCTCAGAAGGTGTTCCGAGGCTCACATGGGACCCTGCCACGAGAACATTCCTCAATGCTCAATAACAGTTATCCCATCCTGTAATTTTGTTTTACATTCTTCTATTCAAACTGACTAACATGCTATGTCGATTCTCATATTCTTGTACAATCTTTATTCTCGACTCAGTATTTTCTTAACCTTTTTTCCTGATATCCTTTGTATTTTTATTGTGGACTCTAACAAGAATTAACAAGATTTGAATAATGTACTGTTTCTTAAAATAAGAATTACAAAAAACGCGAAGAGCTCGCTGAAATTCTTATCAGTTTTGCAATGCACCATTAAAGGAGGCRAGACAACAAAAATTTTGTGGGACAGTTTGGGGGACGAAATGGCGCCGCGCTTATGTAGGCCATCGGTCGTCAGCCGTGTTTGCGCCCCTTAGCTTAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCAAGAGGTCAACCCCTCATGGGGGTTCGCTAGGCAAAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAACACTTAGAGTTATAATATATTCAGTAAATGGATCTCTTGGTATTCGATGCGAAACGAAACAAAAATCCATCAGAAACACCCGTATGCTTTCATAAAGAAGACCTTCACGAGATGTTAGGAAATCAAAAGATTGTCGCCTACTTCGTAGTTGATTGGTTTTATTAAATCTTTCAACTTGAAAATTTCAGAATGGAGGTCTTGTACAAATATTCGATGAACAGGCTTCTCGAATTCTTTTCGAAAATGCTGGAATTGGACAATGGTTGGATGATGATAGAAACGAAAGTCGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAACAAGAATTAACAAGATTTGA</pcr_primer_p1>
		<pcr_primer_p2>GTTTAAAGGAGGCCAGACAT</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>TCTAACAAGAATTAACAAGATTTGAATAATGTACTGTTTCTTAAAATAAGAATTACAAAAAACGCGAAGAGCTCGCTGAAATTCTTATCAGTTTTGCAATGCACCATTAAAGGAGGCGAGACAACAAAAATTTTGTGGGACAGTTTGGGGGACGAAATGGCGCCGCGCTTATGTAGGCCATCGGTCGTCAGCCGTGTTTGCGCCCCTTAGCTTAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCAAGAGGTCAACCCCTCATGGGGGTTCGCTAGGCAAAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAAC</canonical_amplicon>
		<polymorphic_amplicon>TCTAACAAGAATTAACAAGATTTGAATAATGTACTGTTTCTTAAAATAAGAATTACAAAAAACGCGAAGAGCTCGCTGAAATTCTTATCAGTTTTGCAATGCACCATTAAAGGAGGCRAGACAACAAAAATTTTGTGGGACAGTTTGGGGGACGAAATGGCGCCGCGCTTATGTAGGCCATCGGTCGTCAGCCGTGTTTGCGCCCCTTAGCTTAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCAAGAGGTCAACCCCTCATGGGGGTTCGCTAGGCAAAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32878</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>77444</contig_pos>
        <strand>+</strand>
        <context>CRAGACAACA[A/T]AAATTTTGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAAATTCTTATCAGTTTTGCAATGCACCATTAAAGGAGGCGAGACAACA</left_flank>
        <right_flank>AAATTTTGTGGGACAGTTTGGGGGACGAAATGGCGCCGCGCTTATGTAGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAAAAAGAGGCTGCTCAAAACACAAGGGGACTTCCAAATGCTGTGCAGGTATTTAAAAAATCTATTTATGAATAGAATGCTTCAATTATTCCAGGTAGTCGCTGGTATGGGTCGAGAAGAAGATTGTCTCCGCGTAATGAGAATGATCGAAGATGTCTCAGAAGGTGTTCCGAGGCTCACATGGGACCCTGCCACGAGAACATTCCTCAATGCTCAATAACAGTTATCCCATCCTGTAATTTTGTTTTACATTCTTCTATTCAAACTGACTAACATGCTATGTCGATTCTCATATTCTTGTACAATCTTTATTCTCGACTCAGTATTTTCTTAACCTTTTTTCCTGATATCCTTTGTATTTTTATTGTGGACTCTAACAAGAATTAACAAGATTTGAATAATGTACTGTTTCTTAAAATAAGAATTACAAAAAACGCGAAGAGCTCGCTGAAATTCTTATCAGTTTTGCAATGCACCATTAAAGGAGGCGAGACAACAAAAATTTTGTGGGACAGTTTGGGGGACGAAATGGCGCCGCGCTTATGTAGGCCATCGGTCGTCAGCCGTGTTTGCGCCCCTTAGCTTAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCAAGAGGTCAACCCCTCATGGGGGTTCGCTAGGCAAAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAACACTTAGAGTTATAATATATTCAGTAAATGGATCTCTTGGTATTCGATGCGAAACGAAACAAAAATCCATCAGAAACACCCGTATGCTTTCATAAAGAAGACCTTCACGAGATGTTAGGAAATCAAAAGATTGTCGCCTACTTCGTAGTTGATTGGTTTTATTAAATCTTTCAACTTGAAAATTTCAGAATGGAGGTCTTGTACAAATATTCGATGAACAGGCTTCTCGAATTCTTTTCGAAAATGCTGGAATTGGACAATGGTTGGATGATGATAGAAACGAAAGTCGAGAAGTTAGCAG</canonical>
            <polymorphic>GCAAAAAGAGGCTGCTCAAAACACAAGGGGACTTCCAAATGCTGTGCAGGTATTTAAAAAATCTATTTATGAATAGAATGCTTCAATTATTCCAGGTAGTCGCTGGTATGGGTCGAGAAGAAGATTGTCTCCGCGTAATGAGAATGATCGAAGATGTCTCAGAAGGTGTTCCGAGGCTCACATGGGACCCTGCCACGAGAACATTCCTCAATGCTCAATAACAGTTATCCCATCCTGTAATTTTGTTTTACATTCTTCTATTCAAACTGACTAACATGCTATGTCGATTCTCATATTCTTGTACAATCTTTATTCTCGACTCAGTATTTTCTTAACCTTTTTTCCTGATATCCTTTGTATTTTTATTGTGGACTCTAACAAGAATTAACAAGATTTGAATAATGTACTGTTTCTTAAAATAAGAATTACAAAAAACGCGAAGAGCTCGCTGAAATTCTTATCAGTTTTGCAATGCACCATTAAAGGAGGCGAGACAACAWAAATTTTGTGGGACAGTTTGGGGGACGAAATGGCGCCGCGCTTATGTAGGCCATCGGTCGTCAGCCGTGTTTGCGCCCCTTAGCTTAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCAAGAGGTCAACCCCTCATGGGGGTTCGCTAGGCAAAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAACACTTAGAGTTATAATATATTCAGTAAATGGATCTCTTGGTATTCGATGCGAAACGAAACAAAAATCCATCAGAAACACCCGTATGCTTTCATAAAGAAGACCTTCACGAGATGTTAGGAAATCAAAAGATTGTCGCCTACTTCGTAGTTGATTGGTTTTATTAAATCTTTCAACTTGAAAATTTCAGAATGGAGGTCTTGTACAAATATTCGATGAACAGGCTTCTCGAATTCTTTTCGAAAATGCTGGAATTGGACAATGGTTGGATGATGATAGAAACGAAAGTCGAGAAGTTAGCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGCTGAAATTCTTATCAGTT</pcr_primer_p1>
		<pcr_primer_p2>GTTTAAAGGAGGCCAGACAT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CTCGCTGAAATTCTTATCAGTTTTGCAATGCACCATTAAAGGAGGCGAGACAACAAAAATTTTGTGGGACAGTTTGGGGGACGAAATGGCGCCGCGCTTATGTAGGCCATCGGTCGTCAGCCGTGTTTGCGCCCCTTAGCTTAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCAAGAGGTCAACCCCTCATGGGGGTTCGCTAGGCAAAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAAC</canonical_amplicon>
		<polymorphic_amplicon>CTCGCTGAAATTCTTATCAGTTTTGCAATGCACCATTAAAGGAGGCGAGACAACAWAAATTTTGTGGGACAGTTTGGGGGACGAAATGGCGCCGCGCTTATGTAGGCCATCGGTCGTCAGCCGTGTTTGCGCCCCTTAGCTTAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCAAGAGGTCAACCCCTCATGGGGGTTCGCTAGGCAAAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32879</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>77516</contig_pos>
        <strand>+</strand>
        <context>CAGCCGTGTT[C/T]GCGCCCCTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGACGAAATGGCGCCGCGCTTATGTAGGCCATCGGTCGTCAGCCGTGTT</left_flank>
        <right_flank>GCGCCCCTTAGCTTAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGAATGCTTCAATTATTCCAGGTAGTCGCTGGTATGGGTCGAGAAGAAGATTGTCTCCGCGTAATGAGAATGATCGAAGATGTCTCAGAAGGTGTTCCGAGGCTCACATGGGACCCTGCCACGAGAACATTCCTCAATGCTCAATAACAGTTATCCCATCCTGTAATTTTGTTTTACATTCTTCTATTCAAACTGACTAACATGCTATGTCGATTCTCATATTCTTGTACAATCTTTATTCTCGACTCAGTATTTTCTTAACCTTTTTTCCTGATATCCTTTGTATTTTTATTGTGGACTCTAACAAGAATTAACAAGATTTGAATAATGTACTGTTTCTTAAAATAAGAATTACAAAAAACGCGAAGAGCTCGCTGAAATTCTTATCAGTTTTGCAATGCACCATTAAAGGAGGCGAGACAACAAAAATTTTGTGGGACAGTTTGGGGGACGAAATGGCGCCGCGCTTATGTAGGCCATCGGTCGTCAGCCGTGTTTGCGCCCCTTAGCTTAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCAAGAGGTCAACCCCTCATGGGGGTTCGCTAGGCAAAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAACACTTAGAGTTATAATATATTCAGTAAATGGATCTCTTGGTATTCGATGCGAAACGAAACAAAAATCCATCAGAAACACCCGTATGCTTTCATAAAGAAGACCTTCACGAGATGTTAGGAAATCAAAAGATTGTCGCCTACTTCGTAGTTGATTGGTTTTATTAAATCTTTCAACTTGAAAATTTCAGAATGGAGGTCTTGTACAAATATTCGATGAACAGGCTTCTCGAATTCTTTTCGAAAATGCTGGAATTGGACAATGGTTGGATGATGATAGAAACGAAAGTCGAGAAGTTAGCAGTACTTGTTTTTGTCAGGAAGACGGAGACGAAGCTTCCCATAAAATGGCTGAAAAAGCTGCCGAAAACTGGTC</canonical>
            <polymorphic>ATAGAATGCTTCAATTATTCCAGGTAGTCGCTGGTATGGGTCGAGAAGAAGATTGTCTCCGCGTAATGAGAATGATCGAAGATGTCTCAGAAGGTGTTCCGAGGCTCACATGGGACCCTGCCACGAGAACATTCCTCAATGCTCAATAACAGTTATCCCATCCTGTAATTTTGTTTTACATTCTTCTATTCAAACTGACTAACATGCTATGTCGATTCTCATATTCTTGTACAATCTTTATTCTCGACTCAGTATTTTCTTAACCTTTTTTCCTGATATCCTTTGTATTTTTATTGTGGACTCTAACAAGAATTAACAAGATTTGAATAATGTACTGTTTCTTAAAATAAGAATTACAAAAAACGCGAAGAGCTCGCTGAAATTCTTATCAGTTTTGCAATGCACCATTAAAGGAGGCGAGACAACAAAAATTTTGTGGGACAGTTTGGGGGACGAAATGGCGCCGCGCTTATGTAGGCCATCGGTCGTCAGCCGTGTTYGCGCCCCTTAGCTTAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCAAGAGGTCAACCCCTCATGGGGGTTCGCTAGGCAAAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAACACTTAGAGTTATAATATATTCAGTAAATGGATCTCTTGGTATTCGATGCGAAACGAAACAAAAATCCATCAGAAACACCCGTATGCTTTCATAAAGAAGACCTTCACGAGATGTTAGGAAATCAAAAGATTGTCGCCTACTTCGTAGTTGATTGGTTTTATTAAATCTTTCAACTTGAAAATTTCAGAATGGAGGTCTTGTACAAATATTCGATGAACAGGCTTCTCGAATTCTTTTCGAAAATGCTGGAATTGGACAATGGTTGGATGATGATAGAAACGAAAGTCGAGAAGTTAGCAGTACTTGTTTTTGTCAGGAAGACGGAGACGAAGCTTCCCATAAAATGGCTGAAAAAGCTGCCGAAAACTGGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCTTATCAGTTTTGCAATG</pcr_primer_p1>
		<pcr_primer_p2>GTTTAAAGGAGGCCAGACAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATTCTTATCAGTTTTGCAATGCACCATTAAAGGAGGCGAGACAACAAAAATTTTGTGGGACAGTTTGGGGGACGAAATGGCGCCGCGCTTATGTAGGCCATCGGTCGTCAGCCGTGTTTGCGCCCCTTAGCTTAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCAAGAGGTCAACCCCTCATGGGGGTTCGCTAGGCAAAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAAC</canonical_amplicon>
		<polymorphic_amplicon>AAATTCTTATCAGTTTTGCAATGCACCATTAAAGGAGGCGAGACAACAAAAATTTTGTGGGACAGTTTGGGGGACGAAATGGCGCCGCGCTTATGTAGGCCATCGGTCGTCAGCCGTGTTYGCGCCCCTTAGCTTAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCAAGAGGTCAACCCCTCATGGGGGTTCGCTAGGCAAAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32880</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>77576</contig_pos>
        <strand>+</strand>
        <context>CAAGAGGTCA[A/G]CCCCTCATGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCTTAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCAAGAGGTCA</left_flank>
        <right_flank>CCCCTCATGGGGGTTCGCTAGGCAAAATATCAGGAAAACTTTTTTTTGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGTAATGAGAATGATCGAAGATGTCTCAGAAGGTGTTCCGAGGCTCACATGGGACCCTGCCACGAGAACATTCCTCAATGCTCAATAACAGTTATCCCATCCTGTAATTTTGTTTTACATTCTTCTATTCAAACTGACTAACATGCTATGTCGATTCTCATATTCTTGTACAATCTTTATTCTCGACTCAGTATTTTCTTAACCTTTTTTCCTGATATCCTTTGTATTTTTATTGTGGACTCTAACAAGAATTAACAAGATTTGAATAATGTACTGTTTCTTAAAATAAGAATTACAAAAAACGCGAAGAGCTCGCTGAAATTCTTATCAGTTTTGCAATGCACCATTAAAGGAGGCGAGACAACAAAAATTTTGTGGGACAGTTTGGGGGACGAAATGGCGCCGCGCTTATGTAGGCCATCGGTCGTCAGCCGTGTTTGCGCCCCTTAGCTTAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCAAGAGGTCAACCCCTCATGGGGGTTCGCTAGGCAAAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAACACTTAGAGTTATAATATATTCAGTAAATGGATCTCTTGGTATTCGATGCGAAACGAAACAAAAATCCATCAGAAACACCCGTATGCTTTCATAAAGAAGACCTTCACGAGATGTTAGGAAATCAAAAGATTGTCGCCTACTTCGTAGTTGATTGGTTTTATTAAATCTTTCAACTTGAAAATTTCAGAATGGAGGTCTTGTACAAATATTCGATGAACAGGCTTCTCGAATTCTTTTCGAAAATGCTGGAATTGGACAATGGTTGGATGATGATAGAAACGAAAGTCGAGAAGTTAGCAGTACTTGTTTTTGTCAGGAAGACGGAGACGAAGCTTCCCATAAAATGGCTGAAAAAGCTGCCGAAAACTGGTCAGGTTCGTTTCTCGCAAATTAAATATATAAAGAAAATGCACATTTCAGAACAATCCCCAG</canonical>
            <polymorphic>GCGTAATGAGAATGATCGAAGATGTCTCAGAAGGTGTTCCGAGGCTCACATGGGACCCTGCCACGAGAACATTCCTCAATGCTCAATAACAGTTATCCCATCCTGTAATTTTGTTTTACATTCTTCTATTCAAACTGACTAACATGCTATGTCGATTCTCATATTCTTGTACAATCTTTATTCTCGACTCAGTATTTTCTTAACCTTTTTTCCTGATATCCTTTGTATTTTTATTGTGGACTCTAACAAGAATTAACAAGATTTGAATAATGTACTGTTTCTTAAAATAAGAATTACAAAAAACGCGAAGAGCTCGCTGAAATTCTTATCAGTTTTGCAATGCACCATTAAAGGAGGCGAGACAACAAAAATTTTGTGGGACAGTTTGGGGGACGAAATGGCGCCGCGCTTATGTAGGCCATCGGTCGTCAGCCGTGTTTGCGCCCCTTAGCTTAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCAAGAGGTCARCCCCTCATGGGGGTTCGCTAGGCAAAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAACACTTAGAGTTATAATATATTCAGTAAATGGATCTCTTGGTATTCGATGCGAAACGAAACAAAAATCCATCAGAAACACCCGTATGCTTTCATAAAGAAGACCTTCACGAGATGTTAGGAAATCAAAAGATTGTCGCCTACTTCGTAGTTGATTGGTTTTATTAAATCTTTCAACTTGAAAATTTCAGAATGGAGGTCTTGTACAAATATTCGATGAACAGGCTTCTCGAATTCTTTTCGAAAATGCTGGAATTGGACAATGGTTGGATGATGATAGAAACGAAAGTCGAGAAGTTAGCAGTACTTGTTTTTGTCAGGAAGACGGAGACGAAGCTTCCCATAAAATGGCTGAAAAAGCTGCCGAAAACTGGTCAGGTTCGTTTCTCGCAAATTAAATATATAAAGAAAATGCACATTTCAGAACAATCCCCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 260 238</canonical_bands>
                <polymorphic_bands>762 238</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTCTTATCAGTTTTGCAATG</pcr_primer_p1>
		<pcr_primer_p2>GTTTAAAGGAGGCCAGACAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATTCTTATCAGTTTTGCAATGCACCATTAAAGGAGGCGAGACAACAAAAATTTTGTGGGACAGTTTGGGGGACGAAATGGCGCCGCGCTTATGTAGGCCATCGGTCGTCAGCCGTGTTTGCGCCCCTTAGCTTAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCAAGAGGTCAACCCCTCATGGGGGTTCGCTAGGCAAAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAAC</canonical_amplicon>
		<polymorphic_amplicon>AAATTCTTATCAGTTTTGCAATGCACCATTAAAGGAGGCGAGACAACAAAAATTTTGTGGGACAGTTTGGGGGACGAAATGGCGCCGCGCTTATGTAGGCCATCGGTCGTCAGCCGTGTTTGCGCCCCTTAGCTTAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCAAGAGGTCARCCCCTCATGGGGGTTCGCTAGGCAAAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32881</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>77593</contig_pos>
        <strand>+</strand>
        <context>ATGGGGGTTC[G/T]CTAGGCAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGCTGTACCCCTGAGCTGCCTGTCAAGAGGTCAACCCCTCATGGGGGTTC</left_flank>
        <right_flank>CTAGGCAAAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGATGTCTCAGAAGGTGTTCCGAGGCTCACATGGGACCCTGCCACGAGAACATTCCTCAATGCTCAATAACAGTTATCCCATCCTGTAATTTTGTTTTACATTCTTCTATTCAAACTGACTAACATGCTATGTCGATTCTCATATTCTTGTACAATCTTTATTCTCGACTCAGTATTTTCTTAACCTTTTTTCCTGATATCCTTTGTATTTTTATTGTGGACTCTAACAAGAATTAACAAGATTTGAATAATGTACTGTTTCTTAAAATAAGAATTACAAAAAACGCGAAGAGCTCGCTGAAATTCTTATCAGTTTTGCAATGCACCATTAAAGGAGGCGAGACAACAAAAATTTTGTGGGACAGTTTGGGGGACGAAATGGCGCCGCGCTTATGTAGGCCATCGGTCGTCAGCCGTGTTTGCGCCCCTTAGCTTAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCAAGAGGTCAACCCCTCATGGGGGTTCGCTAGGCAAAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAACACTTAGAGTTATAATATATTCAGTAAATGGATCTCTTGGTATTCGATGCGAAACGAAACAAAAATCCATCAGAAACACCCGTATGCTTTCATAAAGAAGACCTTCACGAGATGTTAGGAAATCAAAAGATTGTCGCCTACTTCGTAGTTGATTGGTTTTATTAAATCTTTCAACTTGAAAATTTCAGAATGGAGGTCTTGTACAAATATTCGATGAACAGGCTTCTCGAATTCTTTTCGAAAATGCTGGAATTGGACAATGGTTGGATGATGATAGAAACGAAAGTCGAGAAGTTAGCAGTACTTGTTTTTGTCAGGAAGACGGAGACGAAGCTTCCCATAAAATGGCTGAAAAAGCTGCCGAAAACTGGTCAGGTTCGTTTCTCGCAAATTAAATATATAAAGAAAATGCACATTTCAGAACAATCCCCAGTTTACAATATACTCGTT</canonical>
            <polymorphic>GAAGATGTCTCAGAAGGTGTTCCGAGGCTCACATGGGACCCTGCCACGAGAACATTCCTCAATGCTCAATAACAGTTATCCCATCCTGTAATTTTGTTTTACATTCTTCTATTCAAACTGACTAACATGCTATGTCGATTCTCATATTCTTGTACAATCTTTATTCTCGACTCAGTATTTTCTTAACCTTTTTTCCTGATATCCTTTGTATTTTTATTGTGGACTCTAACAAGAATTAACAAGATTTGAATAATGTACTGTTTCTTAAAATAAGAATTACAAAAAACGCGAAGAGCTCGCTGAAATTCTTATCAGTTTTGCAATGCACCATTAAAGGAGGCGAGACAACAAAAATTTTGTGGGACAGTTTGGGGGACGAAATGGCGCCGCGCTTATGTAGGCCATCGGTCGTCAGCCGTGTTTGCGCCCCTTAGCTTAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCAAGAGGTCAACCCCTCATGGGGGTTCKCTAGGCAAAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAACACTTAGAGTTATAATATATTCAGTAAATGGATCTCTTGGTATTCGATGCGAAACGAAACAAAAATCCATCAGAAACACCCGTATGCTTTCATAAAGAAGACCTTCACGAGATGTTAGGAAATCAAAAGATTGTCGCCTACTTCGTAGTTGATTGGTTTTATTAAATCTTTCAACTTGAAAATTTCAGAATGGAGGTCTTGTACAAATATTCGATGAACAGGCTTCTCGAATTCTTTTCGAAAATGCTGGAATTGGACAATGGTTGGATGATGATAGAAACGAAAGTCGAGAAGTTAGCAGTACTTGTTTTTGTCAGGAAGACGGAGACGAAGCTTCCCATAAAATGGCTGAAAAAGCTGCCGAAAACTGGTCAGGTTCGTTTCTCGCAAATTAAATATATAAAGAAAATGCACATTTCAGAACAATCCCCAGTTTACAATATACTCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCTTATCAGTTTTGCAATG</pcr_primer_p1>
		<pcr_primer_p2>GTTTAAAGGAGGCCAGACAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATTCTTATCAGTTTTGCAATGCACCATTAAAGGAGGCGAGACAACAAAAATTTTGTGGGACAGTTTGGGGGACGAAATGGCGCCGCGCTTATGTAGGCCATCGGTCGTCAGCCGTGTTTGCGCCCCTTAGCTTAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCAAGAGGTCAACCCCTCATGGGGGTTCGCTAGGCAAAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAAC</canonical_amplicon>
		<polymorphic_amplicon>AAATTCTTATCAGTTTTGCAATGCACCATTAAAGGAGGCGAGACAACAAAAATTTTGTGGGACAGTTTGGGGGACGAAATGGCGCCGCGCTTATGTAGGCCATCGGTCGTCAGCCGTGTTTGCGCCCCTTAGCTTAGCCGGTAGCGGCGCTGTACCCCTGAGCTGCCTGTCAAGAGGTCAACCCCTCATGGGGGTTCKCTAGGCAAAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32882</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>78040</contig_pos>
        <strand>+</strand>
        <context>GCAAATTAAA[C/T]ATATAAAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCTGAAAAAGCTGCCGAAAACTGGTCAGGTTCGTTTCTCGCAAATTAAA</left_flank>
        <right_flank>ATATAAAGAAAATGCACATTTCAGAACAATCCCCAGTTTACAATATACTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCGCTGTACCCCTGAGCTGCCTGTCAAGAGGTCAACCCCTCATGGGGGTTCGCTAGGCAAAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAACACTTAGAGTTATAATATATTCAGTAAATGGATCTCTTGGTATTCGATGCGAAACGAAACAAAAATCCATCAGAAACACCCGTATGCTTTCATAAAGAAGACCTTCACGAGATGTTAGGAAATCAAAAGATTGTCGCCTACTTCGTAGTTGATTGGTTTTATTAAATCTTTCAACTTGAAAATTTCAGAATGGAGGTCTTGTACAAATATTCGATGAACAGGCTTCTCGAATTCTTTTCGAAAATGCTGGAATTGGACAATGGTTGGATGATGATAGAAACGAAAGTCGAGAAGTTAGCAGTACTTGTTTTTGTCAGGAAGACGGAGACGAAGCTTCCCATAAAATGGCTGAAAAAGCTGCCGAAAACTGGTCAGGTTCGTTTCTCGCAAATTAAATATATAAAGAAAATGCACATTTCAGAACAATCCCCAGTTTACAATATACTCGTTTTGTCATCAATGGAAACCGTACTACTTTCTATTGACTGGCAGATTTTGAATGTAAAAAATATGCAAAAAGTTTTGACGGATAATGAGATTTGGTTGAAAATGAAAGACTACGATGATAAACCGGAGGATTTTGGAAAGTGTTTTGCCGTTTTTCGATTTTTGAAATTGAATGGATGGATCGTTTCGAGTGGTCTCACTTTTGGATGTCATTTTTGTATGCTCCTTTCAAGGCCGAATTTCTCAAATTTGTATTTTTTCAGTAATTTACTGTCACGGTGCTCAATTCTATCATTCATCTGCTGGAGTTCTCATCACAAATGAGATTGATCCTCAACGGCTTCTAACCCTCACTCGGATTTTGTCTCATAACAAGAAAGCATTAATCGTTGCAAACACATCAGAAGACGTGCAAAGTTTTGAAGACGTGCGGAAGGTAGAAGTGAAAAT</canonical>
            <polymorphic>GGCGCTGTACCCCTGAGCTGCCTGTCAAGAGGTCAACCCCTCATGGGGGTTCGCTAGGCAAAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAACACTTAGAGTTATAATATATTCAGTAAATGGATCTCTTGGTATTCGATGCGAAACGAAACAAAAATCCATCAGAAACACCCGTATGCTTTCATAAAGAAGACCTTCACGAGATGTTAGGAAATCAAAAGATTGTCGCCTACTTCGTAGTTGATTGGTTTTATTAAATCTTTCAACTTGAAAATTTCAGAATGGAGGTCTTGTACAAATATTCGATGAACAGGCTTCTCGAATTCTTTTCGAAAATGCTGGAATTGGACAATGGTTGGATGATGATAGAAACGAAAGTCGAGAAGTTAGCAGTACTTGTTTTTGTCAGGAAGACGGAGACGAAGCTTCCCATAAAATGGCTGAAAAAGCTGCCGAAAACTGGTCAGGTTCGTTTCTCGCAAATTAAAYATATAAAGAAAATGCACATTTCAGAACAATCCCCAGTTTACAATATACTCGTTTTGTCATCAATGGAAACCGTACTACTTTCTATTGACTGGCAGATTTTGAATGTAAAAAATATGCAAAAAGTTTTGACGGATAATGAGATTTGGTTGAAAATGAAAGACTACGATGATAAACCGGAGGATTTTGGAAAGTGTTTTGCCGTTTTTCGATTTTTGAAATTGAATGGATGGATCGTTTCGAGTGGTCTCACTTTTGGATGTCATTTTTGTATGCTCCTTTCAAGGCCGAATTTCTCAAATTTGTATTTTTTCAGTAATTTACTGTCACGGTGCTCAATTCTATCATTCATCTGCTGGAGTTCTCATCACAAATGAGATTGATCCTCAACGGCTTCTAACCCTCACTCGGATTTTGTCTCATAACAAGAAAGCATTAATCGTTGCAAACACATCAGAAGACGTGCAAAGTTTTGAAGACGTGCGGAAGGTAGAAGTGAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACTTGTTTTTGTCAGGAAGAC</pcr_primer_p1>
		<pcr_primer_p2>CATTTTCAACCAAATCTCATTAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GTACTTGTTTTTGTCAGGAAGACGGAGACGAAGCTTCCCATAAAATGGCTGAAAAAGCTGCCGAAAACTGGTCAGGTTCGTTTCTCGCAAATTAAATATATAAAGAAAATGCACATTTCAGAACAATCCCCAGTTTACAATATACTCGTTTTGTCATCAATGGAAACCGTACTACTTTCTATTGACTGGCAGATTTTGAATGTAAAAAATATGCAAAAAGTTTTGACGGATAATGAGATTTGGTTGAAAATG</canonical_amplicon>
		<polymorphic_amplicon>GTACTTGTTTTTGTCAGGAAGACGGAGACGAAGCTTCCCATAAAATGGCTGAAAAAGCTGCCGAAAACTGGTCAGGTTCGTTTCTCGCAAATTAAAYATATAAAGAAAATGCACATTTCAGAACAATCCCCAGTTTACAATATACTCGTTTTGTCATCAATGGAAACCGTACTACTTTCTATTGACTGGCAGATTTTGAATGTAAAAAATATGCAAAAAGTTTTGACGGATAATGAGATTTGGTTGAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32883</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>78100</contig_pos>
        <strand>+</strand>
        <context>CGTTTTGTCA[C/T]CAATGGAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATGCACATTTCAGAACAATCCCCAGTTTACAATATACTCGTTTTGTCA</left_flank>
        <right_flank>CAATGGAAACCGTACTACTTTCTATTGACTGGCAGATTTTGAATGTAAAA</right_flank>
        <qual_score>130</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAACACTTAGAGTTATAATATATTCAGTAAATGGATCTCTTGGTATTCGATGCGAAACGAAACAAAAATCCATCAGAAACACCCGTATGCTTTCATAAAGAAGACCTTCACGAGATGTTAGGAAATCAAAAGATTGTCGCCTACTTCGTAGTTGATTGGTTTTATTAAATCTTTCAACTTGAAAATTTCAGAATGGAGGTCTTGTACAAATATTCGATGAACAGGCTTCTCGAATTCTTTTCGAAAATGCTGGAATTGGACAATGGTTGGATGATGATAGAAACGAAAGTCGAGAAGTTAGCAGTACTTGTTTTTGTCAGGAAGACGGAGACGAAGCTTCCCATAAAATGGCTGAAAAAGCTGCCGAAAACTGGTCAGGTTCGTTTCTCGCAAATTAAATATATAAAGAAAATGCACATTTCAGAACAATCCCCAGTTTACAATATACTCGTTTTGTCATCAATGGAAACCGTACTACTTTCTATTGACTGGCAGATTTTGAATGTAAAAAATATGCAAAAAGTTTTGACGGATAATGAGATTTGGTTGAAAATGAAAGACTACGATGATAAACCGGAGGATTTTGGAAAGTGTTTTGCCGTTTTTCGATTTTTGAAATTGAATGGATGGATCGTTTCGAGTGGTCTCACTTTTGGATGTCATTTTTGTATGCTCCTTTCAAGGCCGAATTTCTCAAATTTGTATTTTTTCAGTAATTTACTGTCACGGTGCTCAATTCTATCATTCATCTGCTGGAGTTCTCATCACAAATGAGATTGATCCTCAACGGCTTCTAACCCTCACTCGGATTTTGTCTCATAACAAGAAAGCATTAATCGTTGCAAACACATCAGAAGACGTGCAAAGTTTTGAAGACGTGCGGAAGGTAGAAGTGAAAATAGTGACAATGAAGACATACTTCCTGGAAAGAGATGTGGCATTGATGTCGAATAAGCAAAA</canonical>
            <polymorphic>AAATATCAGGAAAACTTTTTTTTGATGTCTGGCCTCCTTTAAACACTTAGAGTTATAATATATTCAGTAAATGGATCTCTTGGTATTCGATGCGAAACGAAACAAAAATCCATCAGAAACACCCGTATGCTTTCATAAAGAAGACCTTCACGAGATGTTAGGAAATCAAAAGATTGTCGCCTACTTCGTAGTTGATTGGTTTTATTAAATCTTTCAACTTGAAAATTTCAGAATGGAGGTCTTGTACAAATATTCGATGAACAGGCTTCTCGAATTCTTTTCGAAAATGCTGGAATTGGACAATGGTTGGATGATGATAGAAACGAAAGTCGAGAAGTTAGCAGTACTTGTTTTTGTCAGGAAGACGGAGACGAAGCTTCCCATAAAATGGCTGAAAAAGCTGCCGAAAACTGGTCAGGTTCGTTTCTCGCAAATTAAATATATAAAGAAAATGCACATTTCAGAACAATCCCCAGTTTACAATATACTCGTTTTGTCAYCAATGGAAACCGTACTACTTTCTATTGACTGGCAGATTTTGAATGTAAAAAATATGCAAAAAGTTTTGACGGATAATGAGATTTGGTTGAAAATGAAAGACTACGATGATAAACCGGAGGATTTTGGAAAGTGTTTTGCCGTTTTTCGATTTTTGAAATTGAATGGATGGATCGTTTCGAGTGGTCTCACTTTTGGATGTCATTTTTGTATGCTCCTTTCAAGGCCGAATTTCTCAAATTTGTATTTTTTCAGTAATTTACTGTCACGGTGCTCAATTCTATCATTCATCTGCTGGAGTTCTCATCACAAATGAGATTGATCCTCAACGGCTTCTAACCCTCACTCGGATTTTGTCTCATAACAAGAAAGCATTAATCGTTGCAAACACATCAGAAGACGTGCAAAGTTTTGAAGACGTGCGGAAGGTAGAAGTGAAAATAGTGACAATGAAGACATACTTCCTGGAAAGAGATGTGGCATTGATGTCGAATAAGCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACTTGTTTTTGTCAGGAAGAC</pcr_primer_p1>
		<pcr_primer_p2>CATTTTCAACCAAATCTCATTAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GTACTTGTTTTTGTCAGGAAGACGGAGACGAAGCTTCCCATAAAATGGCTGAAAAAGCTGCCGAAAACTGGTCAGGTTCGTTTCTCGCAAATTAAATATATAAAGAAAATGCACATTTCAGAACAATCCCCAGTTTACAATATACTCGTTTTGTCATCAATGGAAACCGTACTACTTTCTATTGACTGGCAGATTTTGAATGTAAAAAATATGCAAAAAGTTTTGACGGATAATGAGATTTGGTTGAAAATG</canonical_amplicon>
		<polymorphic_amplicon>GTACTTGTTTTTGTCAGGAAGACGGAGACGAAGCTTCCCATAAAATGGCTGAAAAAGCTGCCGAAAACTGGTCAGGTTCGTTTCTCGCAAATTAAATATATAAAGAAAATGCACATTTCAGAACAATCCCCAGTTTACAATATACTCGTTTTGTCAYCAATGGAAACCGTACTACTTTCTATTGACTGGCAGATTTTGAATGTAAAAAATATGCAAAAAGTTTTGACGGATAATGAGATTTGGTTGAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32884</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>78222</contig_pos>
        <strand>+</strand>
        <context>AACCGGAGGA[G/T]TTTGRAAAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATAATGAGATTTGGTTGAAAATGAAAGACTACGATGATAAACCGGAGGA</left_flank>
        <right_flank>TTTGGAAAGTGTTTTGCCGTTTTTCGATTTTTGAAATTGAATGGATGGAT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGTATGCTTTCATAAAGAAGACCTTCACGAGATGTTAGGAAATCAAAAGATTGTCGCCTACTTCGTAGTTGATTGGTTTTATTAAATCTTTCAACTTGAAAATTTCAGAATGGAGGTCTTGTACAAATATTCGATGAACAGGCTTCTCGAATTCTTTTCGAAAATGCTGGAATTGGACAATGGTTGGATGATGATAGAAACGAAAGTCGAGAAGTTAGCAGTACTTGTTTTTGTCAGGAAGACGGAGACGAAGCTTCCCATAAAATGGCTGAAAAAGCTGCCGAAAACTGGTCAGGTTCGTTTCTCGCAAATTAAATATATAAAGAAAATGCACATTTCAGAACAATCCCCAGTTTACAATATACTCGTTTTGTCATCAATGGAAACCGTACTACTTTCTATTGACTGGCAGATTTTGAATGTAAAAAATATGCAAAAAGTTTTGACGGATAATGAGATTTGGTTGAAAATGAAAGACTACGATGATAAACCGGAGGATTTTGGAAAGTGTTTTGCCGTTTTTCGATTTTTGAAATTGAATGGATGGATCGTTTCGAGTGGTCTCACTTTTGGATGTCATTTTTGTATGCTCCTTTCAAGGCCGAATTTCTCAAATTTGTATTTTTTCAGTAATTTACTGTCACGGTGCTCAATTCTATCATTCATCTGCTGGAGTTCTCATCACAAATGAGATTGATCCTCAACGGCTTCTAACCCTCACTCGGATTTTGTCTCATAACAAGAAAGCATTAATCGTTGCAAACACATCAGAAGACGTGCAAAGTTTTGAAGACGTGCGGAAGGTAGAAGTGAAAATAGTGACAATGAAGACATACTTCCTGGAAAGAGATGTGGCATTGATGTCGAATAAGCAAAACGAAATTTATGAATTGACTAATCATACTTAAAGTTGTTCTAATTTTGTTGTTCTTGTTGATATGAATAATATAATTATTCTTTATTGTCTGAAGTATGTCTGAACTTTTGAATGACGCCGGG</canonical>
            <polymorphic>CCGTATGCTTTCATAAAGAAGACCTTCACGAGATGTTAGGAAATCAAAAGATTGTCGCCTACTTCGTAGTTGATTGGTTTTATTAAATCTTTCAACTTGAAAATTTCAGAATGGAGGTCTTGTACAAATATTCGATGAACAGGCTTCTCGAATTCTTTTCGAAAATGCTGGAATTGGACAATGGTTGGATGATGATAGAAACGAAAGTCGAGAAGTTAGCAGTACTTGTTTTTGTCAGGAAGACGGAGACGAAGCTTCCCATAAAATGGCTGAAAAAGCTGCCGAAAACTGGTCAGGTTCGTTTCTCGCAAATTAAATATATAAAGAAAATGCACATTTCAGAACAATCCCCAGTTTACAATATACTCGTTTTGTCATCAATGGAAACCGTACTACTTTCTATTGACTGGCAGATTTTGAATGTAAAAAATATGCAAAAAGTTTTGACGGATAATGAGATTTGGTTGAAAATGAAAGACTACGATGATAAACCGGAGGAKTTTGGAAAGTGTTTTGCCGTTTTTCGATTTTTGAAATTGAATGGATGGATCGTTTCGAGTGGTCTCACTTTTGGATGTCATTTTTGTATGCTCCTTTCAAGGCCGAATTTCTCAAATTTGTATTTTTTCAGTAATTTACTGTCACGGTGCTCAATTCTATCATTCATCTGCTGGAGTTCTCATCACAAATGAGATTGATCCTCAACGGCTTCTAACCCTCACTCGGATTTTGTCTCATAACAAGAAAGCATTAATCGTTGCAAACACATCAGAAGACGTGCAAAGTTTTGAAGACGTGCGGAAGGTAGAAGTGAAAATAGTGACAATGAAGACATACTTCCTGGAAAGAGATGTGGCATTGATGTCGAATAAGCAAAACGAAATTTATGAATTGACTAATCATACTTAAAGTTGTTCTAATTTTGTTGTTCTTGTTGATATGAATAATATAATTATTCTTTATTGTCTGAAGTATGTCTGAACTTTTGAATGACGCCGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAATCCCCAGTTTACAATATAC</pcr_primer_p1>
		<pcr_primer_p2>ATACAAAAATGACATCCAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AACAATCCCCAGTTTACAATATACTCGTTTTGTCATCAATGGAAACCGTACTACTTTCTATTGACTGGCAGATTTTGAATGTAAAAAATATGCAAAAAGTTTTGACGGATAATGAGATTTGGTTGAAAATGAAAGACTACGATGATAAACCGGAGGATTTTGGAAAGTGTTTTGCCGTTTTTCGATTTTTGAAATTGAATGGATGGATCGTTTCGAGTGGTCTCACTTTTGGATGTCATTTTTGTAT</canonical_amplicon>
		<polymorphic_amplicon>AACAATCCCCAGTTTACAATATACTCGTTTTGTCATCAATGGAAACCGTACTACTTTCTATTGACTGGCAGATTTTGAATGTAAAAAATATGCAAAAAGTTTTGACGGATAATGAGATTTGGTTGAAAATGAAAGACTACGATGATAAACCGGAGGAKTTTGGAAAGTGTTTTGCCGTTTTTCGATTTTTGAAATTGAATGGATGGATCGTTTCGAGTGGTCTCACTTTTGGATGTCATTTTTGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32885</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>78236</contig_pos>
        <strand>+</strand>
        <context>GRAAAGTGTT[A/T]TGCCGTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTGAAAATGAAAGACTACGATGATAAACCGGAGGATTTTGGAAAGTGTT</left_flank>
        <right_flank>TGCCGTTTTTCGATTTTTGAAATTGAATGGATGGATCGTTTCGAGTGGTC</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGAAGACCTTCACGAGATGTTAGGAAATCAAAAGATTGTCGCCTACTTCGTAGTTGATTGGTTTTATTAAATCTTTCAACTTGAAAATTTCAGAATGGAGGTCTTGTACAAATATTCGATGAACAGGCTTCTCGAATTCTTTTCGAAAATGCTGGAATTGGACAATGGTTGGATGATGATAGAAACGAAAGTCGAGAAGTTAGCAGTACTTGTTTTTGTCAGGAAGACGGAGACGAAGCTTCCCATAAAATGGCTGAAAAAGCTGCCGAAAACTGGTCAGGTTCGTTTCTCGCAAATTAAATATATAAAGAAAATGCACATTTCAGAACAATCCCCAGTTTACAATATACTCGTTTTGTCATCAATGGAAACCGTACTACTTTCTATTGACTGGCAGATTTTGAATGTAAAAAATATGCAAAAAGTTTTGACGGATAATGAGATTTGGTTGAAAATGAAAGACTACGATGATAAACCGGAGGATTTTGGAAAGTGTTTTGCCGTTTTTCGATTTTTGAAATTGAATGGATGGATCGTTTCGAGTGGTCTCACTTTTGGATGTCATTTTTGTATGCTCCTTTCAAGGCCGAATTTCTCAAATTTGTATTTTTTCAGTAATTTACTGTCACGGTGCTCAATTCTATCATTCATCTGCTGGAGTTCTCATCACAAATGAGATTGATCCTCAACGGCTTCTAACCCTCACTCGGATTTTGTCTCATAACAAGAAAGCATTAATCGTTGCAAACACATCAGAAGACGTGCAAAGTTTTGAAGACGTGCGGAAGGTAGAAGTGAAAATAGTGACAATGAAGACATACTTCCTGGAAAGAGATGTGGCATTGATGTCGAATAAGCAAAACGAAATTTATGAATTGACTAATCATACTTAAAGTTGTTCTAATTTTGTTGTTCTTGTTGATATGAATAATATAATTATTCTTTATTGTCTGAAGTATGTCTGAACTTTTGAATGACGCCGGGACTGAACGGTGACT</canonical>
            <polymorphic>AAAGAAGACCTTCACGAGATGTTAGGAAATCAAAAGATTGTCGCCTACTTCGTAGTTGATTGGTTTTATTAAATCTTTCAACTTGAAAATTTCAGAATGGAGGTCTTGTACAAATATTCGATGAACAGGCTTCTCGAATTCTTTTCGAAAATGCTGGAATTGGACAATGGTTGGATGATGATAGAAACGAAAGTCGAGAAGTTAGCAGTACTTGTTTTTGTCAGGAAGACGGAGACGAAGCTTCCCATAAAATGGCTGAAAAAGCTGCCGAAAACTGGTCAGGTTCGTTTCTCGCAAATTAAATATATAAAGAAAATGCACATTTCAGAACAATCCCCAGTTTACAATATACTCGTTTTGTCATCAATGGAAACCGTACTACTTTCTATTGACTGGCAGATTTTGAATGTAAAAAATATGCAAAAAGTTTTGACGGATAATGAGATTTGGTTGAAAATGAAAGACTACGATGATAAACCGGAGGATTTTGGAAAGTGTTWTGCCGTTTTTCGATTTTTGAAATTGAATGGATGGATCGTTTCGAGTGGTCTCACTTTTGGATGTCATTTTTGTATGCTCCTTTCAAGGCCGAATTTCTCAAATTTGTATTTTTTCAGTAATTTACTGTCACGGTGCTCAATTCTATCATTCATCTGCTGGAGTTCTCATCACAAATGAGATTGATCCTCAACGGCTTCTAACCCTCACTCGGATTTTGTCTCATAACAAGAAAGCATTAATCGTTGCAAACACATCAGAAGACGTGCAAAGTTTTGAAGACGTGCGGAAGGTAGAAGTGAAAATAGTGACAATGAAGACATACTTCCTGGAAAGAGATGTGGCATTGATGTCGAATAAGCAAAACGAAATTTATGAATTGACTAATCATACTTAAAGTTGTTCTAATTTTGTTGTTCTTGTTGATATGAATAATATAATTATTCTTTATTGTCTGAAGTATGTCTGAACTTTTGAATGACGCCGGGACTGAACGGTGACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGGTTGAAAATGAAAGACTAC</pcr_primer_p1>
		<pcr_primer_p2>GTTGAGGATCAATCTCATTTGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTGGTTGAAAATGAAAGACTACGATGATAAACCGGAGGATTTTGGAAAGTGTTTTGCCGTTTTTCGATTTTTGAAATTGAATGGATGGATCGTTTCGAGTGGTCTCACTTTTGGATGTCATTTTTGTATGCTCCTTTCAAGGCCGAATTTCTCAAATTTGTATTTTTTCAGTAATTTACTGTCACGGTGCTCAATTCTATCATTCATCTGCTGGAGTTCTCATCACAAATGAGATTGATCCTCAAC</canonical_amplicon>
		<polymorphic_amplicon>TTTGGTTGAAAATGAAAGACTACGATGATAAACCGGAGGATTTTGGAAAGTGTTWTGCCGTTTTTCGATTTTTGAAATTGAATGGATGGATCGTTTCGAGTGGTCTCACTTTTGGATGTCATTTTTGTATGCTCCTTTCAAGGCCGAATTTCTCAAATTTGTATTTTTTCAGTAATTTACTGTCACGGTGCTCAATTCTATCATTCATCTGCTGGAGTTCTCATCACAAATGAGATTGATCCTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32886</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>79437</contig_pos>
        <strand>+</strand>
        <context>ATCAAAAACT[A/T]AATTGTATCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTGTTTTGAGTGCATATGTTTGGAGAGCAATCAAAATCAATCAAAAACT</left_flank>
        <right_flank>AATTGTATCACAGAAGTTTTAAAAGGAGCTTTTATTGGTAAGAAAACAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATTTTTTGTCTAGAAAAAAGAAGATGAGTTGTCTGGGAAGATTCCTAATCGGATTCTTTGTATTCATATTCTATCTCTTTAGTCTTCCGTTTTTGATGATTTATGCCATCCCTAAAATTTTAATTGAAAAGGTAAGTGGCTATCATAATTCATGACTTAATTATGTTTTAGTGTCGAAAACCATCTCGAAAACGACGGATTCATAATTTTCGTATCCGTCAGACGGACGGATTTTTGGATTTCGAGAATCGAACTCTTCCGGTTAATCTTTTACATAATGAAAGAATAAATGGACCTAAAGAAAATGCTGAAGAAATTGAAAAGAGCTTTCAAACGGTTCTCGCTATGGATTTTCCAACTTTGCGGGGTTTGTTGAGAACCGGTTGGGTTACTGTATTCGAAACCCATTTCCAGGAGCCCTCCAATCTGAAAAATACAACGCCTACACTGTTTTGAGTGCATATGTTTGGAGAGCAATCAAAATCAATCAAAAACTAAATTGTATCACAGAAGTTTTAAAAGGAGCTTTTATTGGTAAGAAAACAGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGGGATCTTATTTCTCTGTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCTAT</canonical>
            <polymorphic>AATATTTTTTGTCTAGAAAAAAGAAGATGAGTTGTCTGGGAAGATTCCTAATCGGATTCTTTGTATTCATATTCTATCTCTTTAGTCTTCCGTTTTTGATGATTTATGCCATCCCTAAAATTTTAATTGAAAAGGTAAGTGGCTATCATAATTCATGACTTAATTATGTTTTAGTGTCGAAAACCATCTCGAAAACGACGGATTCATAATTTTCGTATCCGTCAGACGGACGGATTTTTGGATTTCGAGAATCGAACTCTTCCGGTTAATCTTTTACATAATGAAAGAATAAATGGACCTAAAGAAAATGCTGAAGAAATTGAAAAGAGCTTTCAAACGGTTCTCGCTATGGATTTTCCAACTTTGCGGGGTTTGTTGAGAACCGGTTGGGTTACTGTATTCGAAACCCATTTCCAGGAGCCCTCCAATCTGAAAAATACAACGCCTACACTGTTTTGAGTGCATATGTTTGGAGAGCAATCAAAATCAATCAAAAACTWAATTGTATCACAGAAGTTTTAAAAGGAGCTTTTATTGGTAAGAAAACAGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGGGATCTTATTTCTCTGTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTGTTTTGAGTGCATATGTT</pcr_primer_p1>
		<pcr_primer_p2>CCTCATAAAAGTATAATTGCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>476</pcr_amplicon_size>
		<canonical_amplicon>CACTGTTTTGAGTGCATATGTTTGGAGAGCAATCAAAATCAATCAAAAACTAAATTGTATCACAGAAGTTTTAAAAGGAGCTTTTATTGGTAAGAAAACAGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGG</canonical_amplicon>
		<polymorphic_amplicon>CACTGTTTTGAGTGCATATGTTTGGAGAGCAATCAAAATCAATCAAAAACTWAATTGTATCACAGAAGTTTTAAAAGGAGCTTTTATTGGTAAGAAAACAGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32887</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>79460</contig_pos>
        <strand>+</strand>
        <context>GAAGTTTTAA[A/C]AGGAGCTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAGAGCAATCAAAATCAATCAAAAACTAAATTGTATCACAGAAGTTTTAA</left_flank>
        <right_flank>AGGAGCTTTTATTGGTAAGAAAACAGGAACAATTACTTGTAAGCCGGGCT</right_flank>
        <qual_score>130</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGATGAGTTGTCTGGGAAGATTCCTAATCGGATTCTTTGTATTCATATTCTATCTCTTTAGTCTTCCGTTTTTGATGATTTATGCCATCCCTAAAATTTTAATTGAAAAGGTAAGTGGCTATCATAATTCATGACTTAATTATGTTTTAGTGTCGAAAACCATCTCGAAAACGACGGATTCATAATTTTCGTATCCGTCAGACGGACGGATTTTTGGATTTCGAGAATCGAACTCTTCCGGTTAATCTTTTACATAATGAAAGAATAAATGGACCTAAAGAAAATGCTGAAGAAATTGAAAAGAGCTTTCAAACGGTTCTCGCTATGGATTTTCCAACTTTGCGGGGTTTGTTGAGAACCGGTTGGGTTACTGTATTCGAAACCCATTTCCAGGAGCCCTCCAATCTGAAAAATACAACGCCTACACTGTTTTGAGTGCATATGTTTGGAGAGCAATCAAAATCAATCAAAAACTAAATTGTATCACAGAAGTTTTAAAAGGAGCTTTTATTGGTAAGAAAACAGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGGGATCTTATTTCTCTGTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCTATTTGGAATTCCGTTTTCTGTGAAA</canonical>
            <polymorphic>AAGATGAGTTGTCTGGGAAGATTCCTAATCGGATTCTTTGTATTCATATTCTATCTCTTTAGTCTTCCGTTTTTGATGATTTATGCCATCCCTAAAATTTTAATTGAAAAGGTAAGTGGCTATCATAATTCATGACTTAATTATGTTTTAGTGTCGAAAACCATCTCGAAAACGACGGATTCATAATTTTCGTATCCGTCAGACGGACGGATTTTTGGATTTCGAGAATCGAACTCTTCCGGTTAATCTTTTACATAATGAAAGAATAAATGGACCTAAAGAAAATGCTGAAGAAATTGAAAAGAGCTTTCAAACGGTTCTCGCTATGGATTTTCCAACTTTGCGGGGTTTGTTGAGAACCGGTTGGGTTACTGTATTCGAAACCCATTTCCAGGAGCCCTCCAATCTGAAAAATACAACGCCTACACTGTTTTGAGTGCATATGTTTGGAGAGCAATCAAAATCAATCAAAAACTAAATTGTATCACAGAAGTTTTAAMAGGAGCTTTTATTGGTAAGAAAACAGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGGGATCTTATTTCTCTGTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCTATTTGGAATTCCGTTTTCTGTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAGCAATCAAAATCAATCA</pcr_primer_p1>
		<pcr_primer_p2>CCTCATAAAAGTATAATTGCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>452</pcr_amplicon_size>
		<canonical_amplicon>GAGAGCAATCAAAATCAATCAAAAACTAAATTGTATCACAGAAGTTTTAAAAGGAGCTTTTATTGGTAAGAAAACAGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGG</canonical_amplicon>
		<polymorphic_amplicon>GAGAGCAATCAAAATCAATCAAAAACTAAATTGTATCACAGAAGTTTTAAMAGGAGCTTTTATTGGTAAGAAAACAGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32888</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>79651</contig_pos>
        <strand></strand>
        <context>aaagttacag[A/G]caaaacgggy</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAG</left_flank>
        <right_flank>CAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATCCGTCAGACGGACGGATTTTTGGATTTCGAGAATCGAACTCTTCCGGTTAATCTTTTACATAATGAAAGAATAAATGGACCTAAAGAAAATGCTGAAGAAATTGAAAAGAGCTTTCAAACGGTTCTCGCTATGGATTTTCCAACTTTGCGGGGTTTGTTGAGAACCGGTTGGGTTACTGTATTCGAAACCCATTTCCAGGAGCCCTCCAATCTGAAAAATACAACGCCTACACTGTTTTGAGTGCATATGTTTGGAGAGCAATCAAAATCAATCAAAAACTAAATTGTATCACAGAAGTTTTAAAAGGAGCTTTTATTGGTAAGAAAACAGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGGGATCTTATTTCTCTGTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCTATTTGGAATTCCGTTTTCTGTGAAAAGCAATTTCCATGTGAGTCAAAGTGATATCAGTTTTTGAAAATCAAAATTTGAATTCAGATGGATGGATATGAGGCTACTGTAGGATTGGCTAGCCTTTTGGAAACGCAAGAAAAATCCACATGCTCATTAGTTCAGTTTCTGAAAGAACAAGGAGCAATTCCGTTCTGTTTAACTAATGTTCCACAAGGA</canonical>
            <polymorphic>GTATCCGTCAGACGGACGGATTTTTGGATTTCGAGAATCGAACTCTTCCGGTTAATCTTTTACATAATGAAAGAATAAATGGACCTAAAGAAAATGCTGAAGAAATTGAAAAGAGCTTTCAAACGGTTCTCGCTATGGATTTTCCAACTTTGCGGGGTTTGTTGAGAACCGGTTGGGTTACTGTATTCGAAACCCATTTCCAGGAGCCCTCCAATCTGAAAAATACAACGCCTACACTGTTTTGAGTGCATATGTTTGGAGAGCAATCAAAATCAATCAAAAACTAAATTGTATCACAGAAGTTTTAAAAGGAGCTTTTATTGGTAAGAAAACAGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGRCAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGGGATCTTATTTCTCTGTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCTATTTGGAATTCCGTTTTCTGTGAAAAGCAATTTCCATGTGAGTCAAAGTGATATCAGTTTTTGAAAATCAAAATTTGAATTCAGATGGATGGATATGAGGCTACTGTAGGATTGGCTAGCCTTTTGGAAACGCAAGAAAAATCCACATGCTCATTAGTTCAGTTTCTGAAAGAACAAGGAGCAATTCCGTTCTGTTTAACTAATGTTCCACAAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAATCAAAATCAATCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCTCATAAAAGTATAATTGCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>448</pcr_amplicon_size>
		<canonical_amplicon>GCAATCAAAATCAATCAAAAACTAAATTGTATCACAGAAGTTTTAAAAGGAGCTTTTATTGGTAAGAAAACAGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGG</canonical_amplicon>
		<polymorphic_amplicon>GCAATCAAAATCAATCAAAAACTAAATTGTATCACAGAAGTTTTAAAAGGAGCTTTTATTGGTAAGAAAACAGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGRCAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32889</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>79661</contig_pos>
        <strand></strand>
        <context>rcaaaacggg[T/C]taaaaacagg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGG</left_flank>
        <right_flank>TAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACGGACGGATTTTTGGATTTCGAGAATCGAACTCTTCCGGTTAATCTTTTACATAATGAAAGAATAAATGGACCTAAAGAAAATGCTGAAGAAATTGAAAAGAGCTTTCAAACGGTTCTCGCTATGGATTTTCCAACTTTGCGGGGTTTGTTGAGAACCGGTTGGGTTACTGTATTCGAAACCCATTTCCAGGAGCCCTCCAATCTGAAAAATACAACGCCTACACTGTTTTGAGTGCATATGTTTGGAGAGCAATCAAAATCAATCAAAAACTAAATTGTATCACAGAAGTTTTAAAAGGAGCTTTTATTGGTAAGAAAACAGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGGGATCTTATTTCTCTGTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCTATTTGGAATTCCGTTTTCTGTGAAAAGCAATTTCCATGTGAGTCAAAGTGATATCAGTTTTTGAAAATCAAAATTTGAATTCAGATGGATGGATATGAGGCTACTGTAGGATTGGCTAGCCTTTTGGAAACGCAAGAAAAATCCACATGCTCATTAGTTCAGTTTCTGAAAGAACAAGGAGCAATTCCGTTCTGTTTAACTAATGTTCCACAAGGACTTTTATCGT</canonical>
            <polymorphic>GACGGACGGATTTTTGGATTTCGAGAATCGAACTCTTCCGGTTAATCTTTTACATAATGAAAGAATAAATGGACCTAAAGAAAATGCTGAAGAAATTGAAAAGAGCTTTCAAACGGTTCTCGCTATGGATTTTCCAACTTTGCGGGGTTTGTTGAGAACCGGTTGGGTTACTGTATTCGAAACCCATTTCCAGGAGCCCTCCAATCTGAAAAATACAACGCCTACACTGTTTTGAGTGCATATGTTTGGAGAGCAATCAAAATCAATCAAAAACTAAATTGTATCACAGAAGTTTTAAAAGGAGCTTTTATTGGTAAGAAAACAGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGYTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGGGATCTTATTTCTCTGTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCTATTTGGAATTCCGTTTTCTGTGAAAAGCAATTTCCATGTGAGTCAAAGTGATATCAGTTTTTGAAAATCAAAATTTGAATTCAGATGGATGGATATGAGGCTACTGTAGGATTGGCTAGCCTTTTGGAAACGCAAGAAAAATCCACATGCTCATTAGTTCAGTTTCTGAAAGAACAAGGAGCAATTCCGTTCTGTTTAACTAATGTTCCACAAGGACTTTTATCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>470 253 205 42 30</canonical_bands>
                <polymorphic_bands>675 253 42 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAATCAAAATCAATCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCTCATAAAAGTATAATTGCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>448</pcr_amplicon_size>
		<canonical_amplicon>GCAATCAAAATCAATCAAAAACTAAATTGTATCACAGAAGTTTTAAAAGGAGCTTTTATTGGTAAGAAAACAGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGG</canonical_amplicon>
		<polymorphic_amplicon>GCAATCAAAATCAATCAAAAACTAAATTGTATCACAGAAGTTTTAAAAGGAGCTTTTATTGGTAAGAAAACAGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGYTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32890</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>79775</contig_pos>
        <strand></strand>
        <context>cttgctgagt[T/C]ctatcatatc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGT</left_flank>
        <right_flank>CTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTCTCGCTATGGATTTTCCAACTTTGCGGGGTTTGTTGAGAACCGGTTGGGTTACTGTATTCGAAACCCATTTCCAGGAGCCCTCCAATCTGAAAAATACAACGCCTACACTGTTTTGAGTGCATATGTTTGGAGAGCAATCAAAATCAATCAAAAACTAAATTGTATCACAGAAGTTTTAAAAGGAGCTTTTATTGGTAAGAAAACAGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGGGATCTTATTTCTCTGTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCTATTTGGAATTCCGTTTTCTGTGAAAAGCAATTTCCATGTGAGTCAAAGTGATATCAGTTTTTGAAAATCAAAATTTGAATTCAGATGGATGGATATGAGGCTACTGTAGGATTGGCTAGCCTTTTGGAAACGCAAGAAAAATCCACATGCTCATTAGTTCAGTTTCTGAAAGAACAAGGAGCAATTCCGTTCTGTTTAACTAATGTTCCACAAGGACTTTTATCGTATATAACATCTAATCCATTATACGGAACCACTAAAAATCCATGGGACTTTTCTCGTACTCCTGGAGGATCGTCAGGTGGAGAAGCAGCTCTTCTGGCTGCAGGTGGAGCAGTTT</canonical>
            <polymorphic>GGTTCTCGCTATGGATTTTCCAACTTTGCGGGGTTTGTTGAGAACCGGTTGGGTTACTGTATTCGAAACCCATTTCCAGGAGCCCTCCAATCTGAAAAATACAACGCCTACACTGTTTTGAGTGCATATGTTTGGAGAGCAATCAAAATCAATCAAAAACTAAATTGTATCACAGAAGTTTTAAAAGGAGCTTTTATTGGTAAGAAAACAGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTYCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGGGATCTTATTTCTCTGTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCTATTTGGAATTCCGTTTTCTGTGAAAAGCAATTTCCATGTGAGTCAAAGTGATATCAGTTTTTGAAAATCAAAATTTGAATTCAGATGGATGGATATGAGGCTACTGTAGGATTGGCTAGCCTTTTGGAAACGCAAGAAAAATCCACATGCTCATTAGTTCAGTTTCTGAAAGAACAAGGAGCAATTCCGTTCTGTTTAACTAATGTTCCACAAGGACTTTTATCGTATATAACATCTAATCCATTATACGGAACCACTAAAAATCCATGGGACTTTTCTCGTACTCCTGGAGGATCGTCAGGTGGAGAAGCAGCTCTTCTGGCTGCAGGTGGAGCAGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAATCAAAATCAATCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCTCATAAAAGTATAATTGCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>448</pcr_amplicon_size>
		<canonical_amplicon>GCAATCAAAATCAATCAAAAACTAAATTGTATCACAGAAGTTTTAAAAGGAGCTTTTATTGGTAAGAAAACAGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGG</canonical_amplicon>
		<polymorphic_amplicon>GCAATCAAAATCAATCAAAAACTAAATTGTATCACAGAAGTTTTAAAAGGAGCTTTTATTGGTAAGAAAACAGGAACAATTACTTGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTYCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32891</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>79997</contig_pos>
        <strand>+</strand>
        <context>TATCAGTTTT[G/T]RAAAATCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGTTTTCTGTGAAAAGCAATTTCCATGTGAGTCAAAGTGATATCAGTTTT</left_flank>
        <right_flank>GAAAATCAAAATTTGAATTCAGATGGATGGATATGAGGCTACTGTAGGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGGGATCTTATTTCTCTGTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCTATTTGGAATTCCGTTTTCTGTGAAAAGCAATTTCCATGTGAGTCAAAGTGATATCAGTTTTTGAAAATCAAAATTTGAATTCAGATGGATGGATATGAGGCTACTGTAGGATTGGCTAGCCTTTTGGAAACGCAAGAAAAATCCACATGCTCATTAGTTCAGTTTCTGAAAGAACAAGGAGCAATTCCGTTCTGTTTAACTAATGTTCCACAAGGACTTTTATCGTATATAACATCTAATCCATTATACGGAACCACTAAAAATCCATGGGACTTTTCTCGTACTCCTGGAGGATCGTCAGGTGGAGAAGCAGCTCTTCTGGCTGCAGGTGGAGCAGTTTTTGGAATAGGAAACGATCTGGTTGGCAGTCTTCGGATTCCAGCTGCATTTTGTGGAATAGTAACTCTGAAACCAACTCAGGATAGACTTCACGAGAGCGCAATGAATCCTGGACTTCCTGGAAGAGGAAGACTTGGATTGAGCTCTGGATTTTTTACCAGAAACGTGGCAGATCAAGAATTCTTGTTGAGACAGATAGTGGGAAATCCGAAGTATCATCAGA</canonical>
            <polymorphic>TGTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGGGATCTTATTTCTCTGTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCTATTTGGAATTCCGTTTTCTGTGAAAAGCAATTTCCATGTGAGTCAAAGTGATATCAGTTTTKGAAAATCAAAATTTGAATTCAGATGGATGGATATGAGGCTACTGTAGGATTGGCTAGCCTTTTGGAAACGCAAGAAAAATCCACATGCTCATTAGTTCAGTTTCTGAAAGAACAAGGAGCAATTCCGTTCTGTTTAACTAATGTTCCACAAGGACTTTTATCGTATATAACATCTAATCCATTATACGGAACCACTAAAAATCCATGGGACTTTTCTCGTACTCCTGGAGGATCGTCAGGTGGAGAAGCAGCTCTTCTGGCTGCAGGTGGAGCAGTTTTTGGAATAGGAAACGATCTGGTTGGCAGTCTTCGGATTCCAGCTGCATTTTGTGGAATAGTAACTCTGAAACCAACTCAGGATAGACTTCACGAGAGCGCAATGAATCCTGGACTTCCTGGAAGAGGAAGACTTGGATTGAGCTCTGGATTTTTTACCAGAAACGTGGCAGATCAAGAATTCTTGTTGAGACAGATAGTGGGAAATCCGAAGTATCATCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTATGAGGGATCTTATTTCTC</pcr_primer_p1>
		<pcr_primer_p2>AGAAACTGAACTAATGAGCATGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTTTTATGAGGGATCTTATTTCTCTGTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCTATTTGGAATTCCGTTTTCTGTGAAAAGCAATTTCCATGTGAGTCAAAGTGATATCAGTTTTTGAAAATCAAAATTTGAATTCAGATGGATGGATATGAGGCTACTGTAGGATTGGCTAGCCTTTTGGAAACGCAAGAAAAATCCACATGCTCATTAGTTCAGTTTCT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTATGAGGGATCTTATTTCTCTGTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCTATTTGGAATTCCGTTTTCTGTGAAAAGCAATTTCCATGTGAGTCAAAGTGATATCAGTTTTKGAAAATCAAAATTTGAATTCAGATGGATGGATATGAGGCTACTGTAGGATTGGCTAGCCTTTTGGAAACGCAAGAAAAATCCACATGCTCATTAGTTCAGTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32892</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>79998</contig_pos>
        <strand>+</strand>
        <context>ATCAGTTTTK[A/G]AAAATCAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTTCTGTGAAAAGCAATTTCCATGTGAGTCAAAGTGATATCAGTTTTT</left_flank>
        <right_flank>AAAATCAAAATTTGAATTCAGATGGATGGATATGAGGCTACTGTAGGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGGGATCTTATTTCTCTGTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCTATTTGGAATTCCGTTTTCTGTGAAAAGCAATTTCCATGTGAGTCAAAGTGATATCAGTTTTTGAAAATCAAAATTTGAATTCAGATGGATGGATATGAGGCTACTGTAGGATTGGCTAGCCTTTTGGAAACGCAAGAAAAATCCACATGCTCATTAGTTCAGTTTCTGAAAGAACAAGGAGCAATTCCGTTCTGTTTAACTAATGTTCCACAAGGACTTTTATCGTATATAACATCTAATCCATTATACGGAACCACTAAAAATCCATGGGACTTTTCTCGTACTCCTGGAGGATCGTCAGGTGGAGAAGCAGCTCTTCTGGCTGCAGGTGGAGCAGTTTTTGGAATAGGAAACGATCTGGTTGGCAGTCTTCGGATTCCAGCTGCATTTTGTGGAATAGTAACTCTGAAACCAACTCAGGATAGACTTCACGAGAGCGCAATGAATCCTGGACTTCCTGGAAGAGGAAGACTTGGATTGAGCTCTGGATTTTTTACCAGAAACGTGGCAGATCAAGAATTCTTGTTGAGACAGATAGTGGGAAATCCGAAGTATCATCAGAT</canonical>
            <polymorphic>GTAAGCCGGGCTACTGGCGGGTCTTTGGATGCCCTGCCATAATTCCTTTTAGAATCAATATTTTCGGAGCAACTAAATTGGATATGATAGAATTTGACTAATAAAATTGATATTTTTGGACAACTGTATCTTGTCTATGAACAAAGTTACAGACAAAACGGGTTAAAAACAGGCAGGGAGCGGCCCGACCTGGACCGGCCACTTTATGGCTTGTAACTTTCTTCATAGACAAGATATAGTTTTTCAAATAGTATCATTTTCTAGTACTTGCTGAGTTCTATCATATCTAATTCAGTTTATCAAAAATATTGATTCTAAAAGAAGCTATGGCAGGGTCCGGTTTGCAATTATACTTTTATGAGGGATCTTATTTCTCTGTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCTATTTGGAATTCCGTTTTCTGTGAAAAGCAATTTCCATGTGAGTCAAAGTGATATCAGTTTTTRAAAATCAAAATTTGAATTCAGATGGATGGATATGAGGCTACTGTAGGATTGGCTAGCCTTTTGGAAACGCAAGAAAAATCCACATGCTCATTAGTTCAGTTTCTGAAAGAACAAGGAGCAATTCCGTTCTGTTTAACTAATGTTCCACAAGGACTTTTATCGTATATAACATCTAATCCATTATACGGAACCACTAAAAATCCATGGGACTTTTCTCGTACTCCTGGAGGATCGTCAGGTGGAGAAGCAGCTCTTCTGGCTGCAGGTGGAGCAGTTTTTGGAATAGGAAACGATCTGGTTGGCAGTCTTCGGATTCCAGCTGCATTTTGTGGAATAGTAACTCTGAAACCAACTCAGGATAGACTTCACGAGAGCGCAATGAATCCTGGACTTCCTGGAAGAGGAAGACTTGGATTGAGCTCTGGATTTTTTACCAGAAACGTGGCAGATCAAGAATTCTTGTTGAGACAGATAGTGGGAAATCCGAAGTATCATCAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTATGAGGGATCTTATTTCTC</pcr_primer_p1>
		<pcr_primer_p2>AGAAACTGAACTAATGAGCATGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTTTTATGAGGGATCTTATTTCTCTGTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCTATTTGGAATTCCGTTTTCTGTGAAAAGCAATTTCCATGTGAGTCAAAGTGATATCAGTTTTTGAAAATCAAAATTTGAATTCAGATGGATGGATATGAGGCTACTGTAGGATTGGCTAGCCTTTTGGAAACGCAAGAAAAATCCACATGCTCATTAGTTCAGTTTCT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTATGAGGGATCTTATTTCTCTGTTTTTTCCAGATGTTGCAAAAATGGATGACGAATATCGTGGCCACTCCAAACCGGTTCTATTTGGAATTCCGTTTTCTGTGAAAAGCAATTTCCATGTGAGTCAAAGTGATATCAGTTTTTRAAAATCAAAATTTGAATTCAGATGGATGGATATGAGGCTACTGTAGGATTGGCTAGCCTTTTGGAAACGCAAGAAAAATCCACATGCTCATTAGTTCAGTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32893</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>87909</contig_pos>
        <strand>+</strand>
        <context>GCGATTTTTC[G/T]AAGATTAAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTGAGGATTTTCGTTTTCGATAGCTTTCATCGTTGATATGCGATTTTTC</left_flank>
        <right_flank>AAGATTAAGGTTTTCGAAGGTTTAAATTTCTAGATTTGTAAGATTCATTT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTAACTTTATTACCTTTTCCTCTATTCCTCGTTCTCCTCATTTCCTTATTTCCTTCTCTTGTCAGTTCTCGTCCAAAACGAGAATATTTGTGTGTGCTCGACCACACCTCTTCTTCCTGTCAAAACGAGCAAAATAGTGTGTAAGACGAAGAGACGCAGACATTTTAGAGAGGTGTGCATAATAGATATGTACTCTATCACTCTTTTCTTACTTTCCGACGTCTTATCACCTCGGACGAGTTGTTGAACGAGAAGAGCAATGATTTTGAGTTGAACGGATCGTTTTGTTTTGTTTTTGATTTATTTCAATTGATGTCATTTACCTGGTCTAATTTCAATGCGCATTACGGTTGAAAATTCGAGCGAGGGAGGAGCTTAAATCCGGTGGCAAAACCTTTAAAGGAGCATGTATTTTTCGTGATTTTTTTCGCCATTTTTTTGTCGATTTTTTGAGGATTTTCGTTTTCGATAGCTTTCATCGTTGATATGCGATTTTTCTAAGATTAAGGTTTTCGAAGGTTTAAATTTCTAGATTTGTAAGATTCATTTTCTGGCAATGAGATTTATTATTTTAAAGTTCAAAGTCTATGAAATTTATCTAAAATTCGGGGAAAAAATTTCACACGATTTTTTGTGGTTCTCGGGATTTTTGTGAAAAAAAAATTCAAATCGAAATTCGTCAAAAATGGGTCGAAAAATAATTACGAAACGTAGATCTTGCGAAAAATAGATTGACCGAAGATCCGCCAACTATGAGCCAATATATGTATCTCGCGTTATTATAAAGATATCAGGTCAACTGACAAACTGTTTATCATAATATCAAGAATATTTTGTCAGTTGACCACATTTTGATATCTTTCACAAGGTCCGAGATATATGAGCTCAAATTTGGCAGATTGAGGTGACGGAGTGTTTATGGTACATTTATAGACTTCCAGGCATCTCATTTTTCTAGATTCCCATTCCCAAGGTTTTTCAATTAGAAGAAGTTATTGA</canonical>
            <polymorphic>CCTAACTTTATTACCTTTTCCTCTATTCCTCGTTCTCCTCATTTCCTTATTTCCTTCTCTTGTCAGTTCTCGTCCAAAACGAGAATATTTGTGTGTGCTCGACCACACCTCTTCTTCCTGTCAAAACGAGCAAAATAGTGTGTAAGACGAAGAGACGCAGACATTTTAGAGAGGTGTGCATAATAGATATGTACTCTATCACTCTTTTCTTACTTTCCGACGTCTTATCACCTCGGACGAGTTGTTGAACGAGAAGAGCAATGATTTTGAGTTGAACGGATCGTTTTGTTTTGTTTTTGATTTATTTCAATTGATGTCATTTACCTGGTCTAATTTCAATGCGCATTACGGTTGAAAATTCGAGCGAGGGAGGAGCTTAAATCCGGTGGCAAAACCTTTAAAGGAGCATGTATTTTTCGTGATTTTTTTCGCCATTTTTTTGTCGATTTTTTGAGGATTTTCGTTTTCGATAGCTTTCATCGTTGATATGCGATTTTTCKAAGATTAAGGTTTTCGAAGGTTTAAATTTCTAGATTTGTAAGATTCATTTTCTGGCAATGAGATTTATTATTTTAAAGTTCAAAGTCTATGAAATTTATCTAAAATTCGGGGAAAAAATTTCACACGATTTTTTGTGGTTCTCGGGATTTTTGTGAAAAAAAAATTCAAATCGAAATTCGTCAAAAATGGGTCGAAAAATAATTACGAAACGTAGATCTTGCGAAAAATAGATTGACCGAAGATCCGCCAACTATGAGCCAATATATGTATCTCGCGTTATTATAAAGATATCAGGTCAACTGACAAACTGTTTATCATAATATCAAGAATATTTTGTCAGTTGACCACATTTTGATATCTTTCACAAGGTCCGAGATATATGAGCTCAAATTTGGCAGATTGAGGTGACGGAGTGTTTATGGTACATTTATAGACTTCCAGGCATCTCATTTTTCTAGATTCCCATTCCCAAGGTTTTTCAATTAGAAGAAGTTATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTATTTCAATTGATGTCATTTAC</pcr_primer_p1>
		<pcr_primer_p2>AATAATAAATCTCATTGCCAGAA</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>GATTTATTTCAATTGATGTCATTTACCTGGTCTAATTTCAATGCGCATTACGGTTGAAAATTCGAGCGAGGGAGGAGCTTAAATCCGGTGGCAAAACCTTTAAAGGAGCATGTATTTTTCGTGATTTTTTTCGCCATTTTTTTGTCGATTTTTTGAGGATTTTCGTTTTCGATAGCTTTCATCGTTGATATGCGATTTTTCTAAGATTAAGGTTTTCGAAGGTTTAAATTTCTAGATTTGTAAGATTCATTTTCTGGCAATGAGATTTATTATT</canonical_amplicon>
		<polymorphic_amplicon>GATTTATTTCAATTGATGTCATTTACCTGGTCTAATTTCAATGCGCATTACGGTTGAAAATTCGAGCGAGGGAGGAGCTTAAATCCGGTGGCAAAACCTTTAAAGGAGCATGTATTTTTCGTGATTTTTTTCGCCATTTTTTTGTCGATTTTTTGAGGATTTTCGTTTTCGATAGCTTTCATCGTTGATATGCGATTTTTCKAAGATTAAGGTTTTCGAAGGTTTAAATTTCTAGATTTGTAAGATTCATTTTCTGGCAATGAGATTTATTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32894</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>87925</contig_pos>
        <strand>+</strand>
        <context>TAAGGTTTTC[G/T]AAGGTTTAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCGATAGCTTTCATCGTTGATATGCGATTTTTCTAAGATTAAGGTTTTC</left_flank>
        <right_flank>AAGGTTTAAATTTCTAGATTTGTAAGATTCATTTTCTGGCAATGAGATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCCTCTATTCCTCGTTCTCCTCATTTCCTTATTTCCTTCTCTTGTCAGTTCTCGTCCAAAACGAGAATATTTGTGTGTGCTCGACCACACCTCTTCTTCCTGTCAAAACGAGCAAAATAGTGTGTAAGACGAAGAGACGCAGACATTTTAGAGAGGTGTGCATAATAGATATGTACTCTATCACTCTTTTCTTACTTTCCGACGTCTTATCACCTCGGACGAGTTGTTGAACGAGAAGAGCAATGATTTTGAGTTGAACGGATCGTTTTGTTTTGTTTTTGATTTATTTCAATTGATGTCATTTACCTGGTCTAATTTCAATGCGCATTACGGTTGAAAATTCGAGCGAGGGAGGAGCTTAAATCCGGTGGCAAAACCTTTAAAGGAGCATGTATTTTTCGTGATTTTTTTCGCCATTTTTTTGTCGATTTTTTGAGGATTTTCGTTTTCGATAGCTTTCATCGTTGATATGCGATTTTTCTAAGATTAAGGTTTTCGAAGGTTTAAATTTCTAGATTTGTAAGATTCATTTTCTGGCAATGAGATTTATTATTTTAAAGTTCAAAGTCTATGAAATTTATCTAAAATTCGGGGAAAAAATTTCACACGATTTTTTGTGGTTCTCGGGATTTTTGTGAAAAAAAAATTCAAATCGAAATTCGTCAAAAATGGGTCGAAAAATAATTACGAAACGTAGATCTTGCGAAAAATAGATTGACCGAAGATCCGCCAACTATGAGCCAATATATGTATCTCGCGTTATTATAAAGATATCAGGTCAACTGACAAACTGTTTATCATAATATCAAGAATATTTTGTCAGTTGACCACATTTTGATATCTTTCACAAGGTCCGAGATATATGAGCTCAAATTTGGCAGATTGAGGTGACGGAGTGTTTATGGTACATTTATAGACTTCCAGGCATCTCATTTTTCTAGATTCCCATTCCCAAGGTTTTTCAATTAGAAGAAGTTATTGAAGTAAAAGAAAGTTCA</canonical>
            <polymorphic>TTTCCTCTATTCCTCGTTCTCCTCATTTCCTTATTTCCTTCTCTTGTCAGTTCTCGTCCAAAACGAGAATATTTGTGTGTGCTCGACCACACCTCTTCTTCCTGTCAAAACGAGCAAAATAGTGTGTAAGACGAAGAGACGCAGACATTTTAGAGAGGTGTGCATAATAGATATGTACTCTATCACTCTTTTCTTACTTTCCGACGTCTTATCACCTCGGACGAGTTGTTGAACGAGAAGAGCAATGATTTTGAGTTGAACGGATCGTTTTGTTTTGTTTTTGATTTATTTCAATTGATGTCATTTACCTGGTCTAATTTCAATGCGCATTACGGTTGAAAATTCGAGCGAGGGAGGAGCTTAAATCCGGTGGCAAAACCTTTAAAGGAGCATGTATTTTTCGTGATTTTTTTCGCCATTTTTTTGTCGATTTTTTGAGGATTTTCGTTTTCGATAGCTTTCATCGTTGATATGCGATTTTTCTAAGATTAAGGTTTTCKAAGGTTTAAATTTCTAGATTTGTAAGATTCATTTTCTGGCAATGAGATTTATTATTTTAAAGTTCAAAGTCTATGAAATTTATCTAAAATTCGGGGAAAAAATTTCACACGATTTTTTGTGGTTCTCGGGATTTTTGTGAAAAAAAAATTCAAATCGAAATTCGTCAAAAATGGGTCGAAAAATAATTACGAAACGTAGATCTTGCGAAAAATAGATTGACCGAAGATCCGCCAACTATGAGCCAATATATGTATCTCGCGTTATTATAAAGATATCAGGTCAACTGACAAACTGTTTATCATAATATCAAGAATATTTTGTCAGTTGACCACATTTTGATATCTTTCACAAGGTCCGAGATATATGAGCTCAAATTTGGCAGATTGAGGTGACGGAGTGTTTATGGTACATTTATAGACTTCCAGGCATCTCATTTTTCTAGATTCCCATTCCCAAGGTTTTTCAATTAGAAGAAGTTATTGAAGTAAAAGAAAGTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>323 261 157 84 83 47 24 21</canonical_bands>
                <polymorphic_bands>323 261 204 84 83 24 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTATTTCAATTGATGTCATTTAC</pcr_primer_p1>
		<pcr_primer_p2>AATAATAAATCTCATTGCCAGAA</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>GATTTATTTCAATTGATGTCATTTACCTGGTCTAATTTCAATGCGCATTACGGTTGAAAATTCGAGCGAGGGAGGAGCTTAAATCCGGTGGCAAAACCTTTAAAGGAGCATGTATTTTTCGTGATTTTTTTCGCCATTTTTTTGTCGATTTTTTGAGGATTTTCGTTTTCGATAGCTTTCATCGTTGATATGCGATTTTTCTAAGATTAAGGTTTTCGAAGGTTTAAATTTCTAGATTTGTAAGATTCATTTTCTGGCAATGAGATTTATTATT</canonical_amplicon>
		<polymorphic_amplicon>GATTTATTTCAATTGATGTCATTTACCTGGTCTAATTTCAATGCGCATTACGGTTGAAAATTCGAGCGAGGGAGGAGCTTAAATCCGGTGGCAAAACCTTTAAAGGAGCATGTATTTTTCGTGATTTTTTTCGCCATTTTTTTGTCGATTTTTTGAGGATTTTCGTTTTCGATAGCTTTCATCGTTGATATGCGATTTTTCTAAGATTAAGGTTTTCKAAGGTTTAAATTTCTAGATTTGTAAGATTCATTTTCTGGCAATGAGATTTATTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32895</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>88192</contig_pos>
        <strand></strand>
        <context>tcgcgttatt[A/T]taaagatatc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGACCGAAGATCCGCCAACTATGAGCCAATATATGTATCTCGCGTTATT</left_flank>
        <right_flank>TAAAGATATCAGGTCAACTGACAAACTGTTTATCATAATATCAAGAATAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGTTTTGTTTTTGATTTATTTCAATTGATGTCATTTACCTGGTCTAATTTCAATGCGCATTACGGTTGAAAATTCGAGCGAGGGAGGAGCTTAAATCCGGTGGCAAAACCTTTAAAGGAGCATGTATTTTTCGTGATTTTTTTCGCCATTTTTTTGTCGATTTTTTGAGGATTTTCGTTTTCGATAGCTTTCATCGTTGATATGCGATTTTTCTAAGATTAAGGTTTTCGAAGGTTTAAATTTCTAGATTTGTAAGATTCATTTTCTGGCAATGAGATTTATTATTTTAAAGTTCAAAGTCTATGAAATTTATCTAAAATTCGGGGAAAAAATTTCACACGATTTTTTGTGGTTCTCGGGATTTTTGTGAAAAAAAAATTCAAATCGAAATTCGTCAAAAATGGGTCGAAAAATAATTACGAAACGTAGATCTTGCGAAAAATAGATTGACCGAAGATCCGCCAACTATGAGCCAATATATGTATCTCGCGTTATTATAAAGATATCAGGTCAACTGACAAACTGTTTATCATAATATCAAGAATATTTTGTCAGTTGACCACATTTTGATATCTTTCACAAGGTCCGAGATATATGAGCTCAAATTTGGCAGATTGAGGTGACGGAGTGTTTATGGTACATTTATAGACTTCCAGGCATCTCATTTTTCTAGATTCCCATTCCCAAGGTTTTTCAATTAGAAGAAGTTATTGAAGTAAAAGAAAGTTCACTGAACACATGGTGCAAACTCATTGACCTTTTTCTGAATCTCCTCATCCGTGGATTTATTCTTGAACCACAGAGCGATTGCTCTTTACACCGTTCCATATTGCTCCGCATTCTCAATGAGACCACATCTTTGTCCTCTCAACTTGTCTACAATCTCTTTCGGATTCACTTCTTTTCCCTTTTAAACATGAAGCATTGAAGTGAAAAGAGCAAGCATCGTTCCAGCACGACCCATTCCGCTCATACTCATCATCACTGTGTTCTAAAT</canonical>
            <polymorphic>TTTTGTTTTGTTTTTGATTTATTTCAATTGATGTCATTTACCTGGTCTAATTTCAATGCGCATTACGGTTGAAAATTCGAGCGAGGGAGGAGCTTAAATCCGGTGGCAAAACCTTTAAAGGAGCATGTATTTTTCGTGATTTTTTTCGCCATTTTTTTGTCGATTTTTTGAGGATTTTCGTTTTCGATAGCTTTCATCGTTGATATGCGATTTTTCTAAGATTAAGGTTTTCGAAGGTTTAAATTTCTAGATTTGTAAGATTCATTTTCTGGCAATGAGATTTATTATTTTAAAGTTCAAAGTCTATGAAATTTATCTAAAATTCGGGGAAAAAATTTCACACGATTTTTTGTGGTTCTCGGGATTTTTGTGAAAAAAAAATTCAAATCGAAATTCGTCAAAAATGGGTCGAAAAATAATTACGAAACGTAGATCTTGCGAAAAATAGATTGACCGAAGATCCGCCAACTATGAGCCAATATATGTATCTCGCGTTATTWTAAAGATATCAGGTCAACTGACAAACTGTTTATCATAATATCAAGAATATTTTGTCAGTTGACCACATTTTGATATCTTTCACAAGGTCCGAGATATATGAGCTCAAATTTGGCAGATTGAGGTGACGGAGTGTTTATGGTACATTTATAGACTTCCAGGCATCTCATTTTTCTAGATTCCCATTCCCAAGGTTTTTCAATTAGAAGAAGTTATTGAAGTAAAAGAAAGTTCACTGAACACATGGTGCAAACTCATTGACCTTTTTCTGAATCTCCTCATCCGTGGATTTATTCTTGAACCACAGAGCGATTGCTCTTTACACCGTTCCATATTGCTCCGCATTCTCAATGAGACCACATCTTTGTCCTCTCAACTTGTCTACAATCTCTTTCGGATTCACTTCTTTTCCCTTTTAAACATGAAGCATTGAAGTGAAAAGAGCAAGCATCGTTCCAGCACGACCCATTCCGCTCATACTCATCATCACTGTGTTCTAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTTGCGAAAAATAGATTGAC</pcr_primer_p1>
		<pcr_primer_p2>ATGGGAATCTAGAAAAATGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATCTTGCGAAAAATAGATTGACCGAAGATCCGCCAACTATGAGCCAATATATGTATCTCGCGTTATTATAAAGATATCAGGTCAACTGACAAACTGTTTATCATAATATCAAGAATATTTTGTCAGTTGACCACATTTTGATATCTTTCACAAGGTCCGAGATATATGAGCTCAAATTTGGCAGATTGAGGTGACGGAGTGTTTATGGTACATTTATAGACTTCCAGGCATCTCATTTTTCTAGATTCCCAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTTGCGAAAAATAGATTGACCGAAGATCCGCCAACTATGAGCCAATATATGTATCTCGCGTTATTWTAAAGATATCAGGTCAACTGACAAACTGTTTATCATAATATCAAGAATATTTTGTCAGTTGACCACATTTTGATATCTTTCACAAGGTCCGAGATATATGAGCTCAAATTTGGCAGATTGAGGTGACGGAGTGTTTATGGTACATTTATAGACTTCCAGGCATCTCATTTTTCTAGATTCCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32896</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>88491</contig_pos>
        <strand>+</strand>
        <context>TTATTCTTGA[A/T]CCACAGAGCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAACTCATTGACCTTTTTCTGAATCTCCTCATCCGTGGATTTATTCTTGA</left_flank>
        <right_flank>CCACAGAGCGATTGCTCTTTACACCGTTCCATATTGCTCCGCATTCTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTCTATGAAATTTATCTAAAATTCGGGGAAAAAATTTCACACGATTTTTTGTGGTTCTCGGGATTTTTGTGAAAAAAAAATTCAAATCGAAATTCGTCAAAAATGGGTCGAAAAATAATTACGAAACGTAGATCTTGCGAAAAATAGATTGACCGAAGATCCGCCAACTATGAGCCAATATATGTATCTCGCGTTATTATAAAGATATCAGGTCAACTGACAAACTGTTTATCATAATATCAAGAATATTTTGTCAGTTGACCACATTTTGATATCTTTCACAAGGTCCGAGATATATGAGCTCAAATTTGGCAGATTGAGGTGACGGAGTGTTTATGGTACATTTATAGACTTCCAGGCATCTCATTTTTCTAGATTCCCATTCCCAAGGTTTTTCAATTAGAAGAAGTTATTGAAGTAAAAGAAAGTTCACTGAACACATGGTGCAAACTCATTGACCTTTTTCTGAATCTCCTCATCCGTGGATTTATTCTTGAACCACAGAGCGATTGCTCTTTACACCGTTCCATATTGCTCCGCATTCTCAATGAGACCACATCTTTGTCCTCTCAACTTGTCTACAATCTCTTTCGGATTCACTTCTTTTCCCTTTTAAACATGAAGCATTGAAGTGAAAAGAGCAAGCATCGTTCCAGCACGACCCATTCCGCTCATACTCATCATCACTGTGTTCTAAATTTTTTCAAATTTAATTTTTAAAATTTCAAAAGAACACTCACCTCATTAGTCTTGAGAACCTTCTCAACTGTAGAAACCAGGTCTCCAACATTATCCAATCCTCTCTTCTGCTTCCAGTTATGAAGATGATAGACTGTGGTAAACAAGGAATTCGAGCATTCGTCTGGCAGAATCTCCAATGTGTAAGCAGTCATGGCAACCGTTGAATCAACTTTCTTGTTGTTCAGAAACATTTTGCCATGATTGGCAAATGTTCCACTTAGAATTGGAAACATCTGCTGGAGGGTCACCGAACATTC</canonical>
            <polymorphic>AAGTCTATGAAATTTATCTAAAATTCGGGGAAAAAATTTCACACGATTTTTTGTGGTTCTCGGGATTTTTGTGAAAAAAAAATTCAAATCGAAATTCGTCAAAAATGGGTCGAAAAATAATTACGAAACGTAGATCTTGCGAAAAATAGATTGACCGAAGATCCGCCAACTATGAGCCAATATATGTATCTCGCGTTATTATAAAGATATCAGGTCAACTGACAAACTGTTTATCATAATATCAAGAATATTTTGTCAGTTGACCACATTTTGATATCTTTCACAAGGTCCGAGATATATGAGCTCAAATTTGGCAGATTGAGGTGACGGAGTGTTTATGGTACATTTATAGACTTCCAGGCATCTCATTTTTCTAGATTCCCATTCCCAAGGTTTTTCAATTAGAAGAAGTTATTGAAGTAAAAGAAAGTTCACTGAACACATGGTGCAAACTCATTGACCTTTTTCTGAATCTCCTCATCCGTGGATTTATTCTTGAWCCACAGAGCGATTGCTCTTTACACCGTTCCATATTGCTCCGCATTCTCAATGAGACCACATCTTTGTCCTCTCAACTTGTCTACAATCTCTTTCGGATTCACTTCTTTTCCCTTTTAAACATGAAGCATTGAAGTGAAAAGAGCAAGCATCGTTCCAGCACGACCCATTCCGCTCATACTCATCATCACTGTGTTCTAAATTTTTTCAAATTTAATTTTTAAAATTTCAAAAGAACACTCACCTCATTAGTCTTGAGAACCTTCTCAACTGTAGAAACCAGGTCTCCAACATTATCCAATCCTCTCTTCTGCTTCCAGTTATGAAGATGATAGACTGTGGTAAACAAGGAATTCGAGCATTCGTCTGGCAGAATCTCCAATGTGTAAGCAGTCATGGCAACCGTTGAATCAACTTTCTTGTTGTTCAGAAACATTTTGCCATGATTGGCAAATGTTCCACTTAGAATTGGAAACATCTGCTGGAGGGTCACCGAACATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTATAGACTTCCAGGCATCTC</pcr_primer_p1>
		<pcr_primer_p2>AGATTGTAGACAAGTTGAGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATTTATAGACTTCCAGGCATCTCATTTTTCTAGATTCCCATTCCCAAGGTTTTTCAATTAGAAGAAGTTATTGAAGTAAAAGAAAGTTCACTGAACACATGGTGCAAACTCATTGACCTTTTTCTGAATCTCCTCATCCGTGGATTTATTCTTGAACCACAGAGCGATTGCTCTTTACACCGTTCCATATTGCTCCGCATTCTCAATGAGACCACATCTTTGTCCTCTCAACTTGTCTACAATCT</canonical_amplicon>
		<polymorphic_amplicon>ATTTATAGACTTCCAGGCATCTCATTTTTCTAGATTCCCATTCCCAAGGTTTTTCAATTAGAAGAAGTTATTGAAGTAAAAGAAAGTTCACTGAACACATGGTGCAAACTCATTGACCTTTTTCTGAATCTCCTCATCCGTGGATTTATTCTTGAWCCACAGAGCGATTGCTCTTTACACCGTTCCATATTGCTCCGCATTCTCAATGAGACCACATCTTTGTCCTCTCAACTTGTCTACAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32897</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>100381</contig_pos>
        <strand></strand>
        <context>ATGATCTATT[T/A]TCGATTGAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGCTAGAATATAATAGCGCCAATTGTGGATCTTTCAAAATATGATCTATT</left_flank>
        <right_flank>TCGATTGAAGTTTTTCCTTTTCAGTAGTCTGAACTTTTCTTCCTGCTAGA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAATGGGTGGACCGATGAGAATGCAGATGCAGCAACCGAGTGAGGCTTAAAAGATATATCTGAAAATAATGCGAATTCATGCTTTCAGTGCGCCAAATGCCCTACCCACCACCTCAAATGCGCGGCCAAGGACCTCCTCAGCACTTTTCTCCGATGGGAATGCCACCGCAACAACAACAGTTCACTCCAAGTGGGCAACCAATTCAGATGGGACAACGTCCAATGCAACAGCCAAATCAAGGGGGCCAAATGCCAATGGGAATGTCTGGGGTATAATGTTGTTGAAGAGGCTTCTGGTAATAATGTTCTAATTATTTCAGCCAGTGCCAATGGGGATGGTCAGTGGACCACCACAGCACGGAATTCAACCGCCGCAGCATTTTATGGTAAGTGTTTCTTTTTCTCATTCTGAAATCTTCATTGTTTACTACAGTAGTAATTTAGACTTGCTAGAATATAATAGCGCCAATTGTGGATCTTTCAAAATATGATCTATTTTCGATTGAAGTTTTTCCTTTTCAGTAGTCTGAACTTTTCTTCCTGCTAGAAACTTTAACATTGTTTTTATTTGTGATTTTTATTTCTATGAAAAGGCCCCGGAACACTAGGTATACAATTTTTGAAAACACCCCTGATGATTTTCTTTTCAGGCAAGCTCCCCAATGCCGCCTCCTCAAATGATGCCGATTCAACAGCAACAACAGCAAGAAGTACTATCTCAGCAGCAAATGCAGCCACAAGCTCCCCGGCAAATACAACAGCCTCTTCCACCTCCTCCACAAGCTCAACAATCCCATTCGCAACAGCAACAACATCCAGGAGGTGTCGTTTGTGGAGCTATAATGGATAAGGTAAAACAGTATTATCAATCGAATTAAACGAAAAATAAAATAGTTTCAGTCAAGACTCGACGACTTGATGCAACAAATTAGTCAGACAACGGTTTTGGAGGAAAGTGTGAAAGATACTCTTGTCGAATATGCGGATGATTTTGTCAG</canonical>
            <polymorphic>TGGAATGGGTGGACCGATGAGAATGCAGATGCAGCAACCGAGTGAGGCTTAAAAGATATATCTGAAAATAATGCGAATTCATGCTTTCAGTGCGCCAAATGCCCTACCCACCACCTCAAATGCGCGGCCAAGGACCTCCTCAGCACTTTTCTCCGATGGGAATGCCACCGCAACAACAACAGTTCACTCCAAGTGGGCAACCAATTCAGATGGGACAACGTCCAATGCAACAGCCAAATCAAGGGGGCCAAATGCCAATGGGAATGTCTGGGGTATAATGTTGTTGAAGAGGCTTCTGGTAATAATGTTCTAATTATTTCAGCCAGTGCCAATGGGGATGGTCAGTGGACCACCACAGCACGGAATTCAACCGCCGCAGCATTTTATGGTAAGTGTTTCTTTTTCTCATTCTGAAATCTTCATTGTTTACTACAGTAGTAATTTAGACTTGCTAGAATATAATAGCGCCAATTGTGGATCTTTCAAAATATGATCTATTWTCGATTGAAGTTTTTCCTTTTCAGTAGTCTGAACTTTTCTTCCTGCTAGAAACTTTAACATTGTTTTTATTTGTGATTTTTATTTCTATGAAAAGGCCCCGGAACACTAGGTATACAATTTTTGAAAACACCCCTGATGATTTTCTTTTCAGGCAAGCTCCCCAATGCCGCCTCCTCAAATGATGCCGATTCAACAGCAACAACAGCAAGAAGTACTATCTCAGCAGCAAATGCAGCCACAAGCTCCCCGGCAAATACAACAGCCTCTTCCACCTCCTCCACAAGCTCAACAATCCCATTCGCAACAGCAACAACATCCAGGAGGTGTCGTTTGTGGAGCTATAATGGATAAGGTAAAACAGTATTATCAATCGAATTAAACGAAAAATAAAATAGTTTCAGTCAAGACTCGACGACTTGATGCAACAAATTAGTCAGACAACGGTTTTGGAGGAAAGTGTGAAAGATACTCTTGTCGAATATGCGGATGATTTTGTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGGTAAGTGTTTCTTTTTCTCA</pcr_primer_p1>
		<pcr_primer_p2>GGTGTTTTCAAAAATTGTATACCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATGGTAAGTGTTTCTTTTTCTCATTCTGAAATCTTCATTGTTTACTACAGTAGTAATTTAGACTTGCTAGAATATAATAGCGCCAATTGTGGATCTTTCAAAATATGATCTATTTTCGATTGAAGTTTTTCCTTTTCAGTAGTCTGAACTTTTCTTCCTGCTAGAAACTTTAACATTGTTTTTATTTGTGATTTTTATTTCTATGAAAAGGCCCCGGAACACTAGGTATACAATTTTTGAAAACACC</canonical_amplicon>
		<polymorphic_amplicon>ATGGTAAGTGTTTCTTTTTCTCATTCTGAAATCTTCATTGTTTACTACAGTAGTAATTTAGACTTGCTAGAATATAATAGCGCCAATTGTGGATCTTTCAAAATATGATCTATTWTCGATTGAAGTTTTTCCTTTTCAGTAGTCTGAACTTTTCTTCCTGCTAGAAACTTTAACATTGTTTTTATTTGTGATTTTTATTTCTATGAAAAGGCCCCGGAACACTAGGTATACAATTTTTGAAAACACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32898</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>116546</contig_pos>
        <strand>+</strand>
        <context>AAGCACCGTT[C/T]GAATAAGGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGGAAAAATCAGAAATGTATTTATTCTCAGGAATTAAGAAGCACCGTT</left_flank>
        <right_flank>GAATAAGGAAGCCGGCTTTCGGAATTATAAGAACCTTCAGAAGAAGTGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACTAACATACCTTTTGTTGTAGTGCCGGTCGGGCGAGATTTTGGGGAAATTAGGGATAATAATGATTTATAGAAGCATTGAAGTTTCTGCGAATTTTGGGTCCAATAAGGAAAAATAAGAATTTCGAGTTGTCCTAAAAACTAAAACTACGGTAAGCAATGCGGTGTTTACACAATCACGTGCTCGACGCGCAACTGCGGACAGCGAAAAAGTAAACAACAAAGAGAAAAGAAGAAAGACAAGAAGGAAAAGAATTGCACGAGAAAAAGAAACAAGAATCGGATTTTCTGAAAAAGAAAGAAAAATGTCAAAAAAATTCAGTTAAATTTCCATAAATTTGAGAAGAGGTTCATGTTTCGTAGAAAGATTGATTCAATCAATTAAAAAATTCGAAGTTCAAAATAGACAAATGTCCGGAATTGGATAATATATTCCCTGTGCCACTGAAAAGGAAAAATCAGAAATGTATTTATTCTCAGGAATTAAGAAGCACCGTTCGAATAAGGAAGCCGGCTTTCGGAATTATAAGAACCTTCAGAAGAAGTGGAACCGAACGCTCTGCAGAACGGAAGTATGAAACTTGTCAAAGTATCAAAACTGCATTCCCGGTTTCTCGATGAACTAATCAATTTCTATCACCTAGCCTTCCATTGATACCAAAATCAGCCCCTCTTACTAATTAGACTTTTCTTTTCTAGAACTTTCAATTTCTATTCATCTTCGATGCCATTTCCTACCATTTTTCTTCTTTTCTTTTCACCAATCTTTGAACGGCTACACTGTCGCCGTTTCTTATCAGTTAATCTATCATTTCGACATTGCTATGTTTACTTTCTTGTTCTTAACCATAATTTTCTTTCCTTATTTGTTTCTTATCATGCATCCGAAACTGAGATCCACAATTCTATTGATTTCATTTTCCAAAACCATTTTTTGGTTTCTAGTTCGTTTATTATCTATTTTTTTCACTGTCAGAAGTTTTTTTTTATCATCCACTG</canonical>
            <polymorphic>TCACTAACATACCTTTTGTTGTAGTGCCGGTCGGGCGAGATTTTGGGGAAATTAGGGATAATAATGATTTATAGAAGCATTGAAGTTTCTGCGAATTTTGGGTCCAATAAGGAAAAATAAGAATTTCGAGTTGTCCTAAAAACTAAAACTACGGTAAGCAATGCGGTGTTTACACAATCACGTGCTCGACGCGCAACTGCGGACAGCGAAAAAGTAAACAACAAAGAGAAAAGAAGAAAGACAAGAAGGAAAAGAATTGCACGAGAAAAAGAAACAAGAATCGGATTTTCTGAAAAAGAAAGAAAAATGTCAAAAAAATTCAGTTAAATTTCCATAAATTTGAGAAGAGGTTCATGTTTCGTAGAAAGATTGATTCAATCAATTAAAAAATTCGAAGTTCAAAATAGACAAATGTCCGGAATTGGATAATATATTCCCTGTGCCACTGAAAAGGAAAAATCAGAAATGTATTTATTCTCAGGAATTAAGAAGCACCGTTYGAATAAGGAAGCCGGCTTTCGGAATTATAAGAACCTTCAGAAGAAGTGGAACCGAACGCTCTGCAGAACGGAAGTATGAAACTTGTCAAAGTATCAAAACTGCATTCCCGGTTTCTCGATGAACTAATCAATTTCTATCACCTAGCCTTCCATTGATACCAAAATCAGCCCCTCTTACTAATTAGACTTTTCTTTTCTAGAACTTTCAATTTCTATTCATCTTCGATGCCATTTCCTACCATTTTTCTTCTTTTCTTTTCACCAATCTTTGAACGGCTACACTGTCGCCGTTTCTTATCAGTTAATCTATCATTTCGACATTGCTATGTTTACTTTCTTGTTCTTAACCATAATTTTCTTTCCTTATTTGTTTCTTATCATGCATCCGAAACTGAGATCCACAATTCTATTGATTTCATTTTCCAAAACCATTTTTTGGTTTCTAGTTCGTTTATTATCTATTTTTTTCACTGTCAGAAGTTTTTTTTTATCATCCACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 392 107</canonical_bands>
                <polymorphic_bands>608 392</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>206 184 127 117 107 107 92 60</canonical_bands>
                <polymorphic_bands>224 206 184 127 107 92 60</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTGAAAAGGAAAAATCAGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTAATTAGTAAGAGGGGCTGATT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ACTGAAAAGGAAAAATCAGAAATGTATTTATTCTCAGGAATTAAGAAGCACCGTTCGAATAAGGAAGCCGGCTTTCGGAATTATAAGAACCTTCAGAAGAAGTGGAACCGAACGCTCTGCAGAACGGAAGTATGAAACTTGTCAAAGTATCAAAACTGCATTCCCGGTTTCTCGATGAACTAATCAATTTCTATCACCTAGCCTTCCATTGATACCAAAATCAGCCCCTCTTACTAATTAG</canonical_amplicon>
		<polymorphic_amplicon>ACTGAAAAGGAAAAATCAGAAATGTATTTATTCTCAGGAATTAAGAAGCACCGTTYGAATAAGGAAGCCGGCTTTCGGAATTATAAGAACCTTCAGAAGAAGTGGAACCGAACGCTCTGCAGAACGGAAGTATGAAACTTGTCAAAGTATCAAAACTGCATTCCCGGTTTCTCGATGAACTAATCAATTTCTATCACCTAGCCTTCCATTGATACCAAAATCAGCCCCTCTTACTAATTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32899</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>120458</contig_pos>
        <strand></strand>
        <context>accgtaaaac[A/C]tataatagaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATAAACTAAGAAAAAAGAGTACAAAATGTTTGGGATATTTACCGTAAAAC</left_flank>
        <right_flank>TATAATAGAAGTGCCCTCACATTGTCTAGTCTTCAGATATCTCGATTTCT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAATCTCAAAAATTCCAATTCATTGTTTTCCATTTTACTTTTCATTAATATCTTCTGTACATTATTTTCTTCTTCTCTAACTTCTGATTTTCTGTCACTCCCCCCAACGGACCTATAAATCAAAAGAGATTGGCTTCCTCCGATGGCAATAGGCCTCCCTATTACGGGTTGTGTAATATTACGGTGAACTGGATTCCTGTTTTTATACAAGTGATTAGAAAAGAAAAGAAGAAGTGAGAAGAAGAAGAAGAAGGCGTTAGGAAAAAAGAGGCGTGGCTCATTTTGATTTTAGGGAATTGATTGGAAATCAAACTTACGAATGTGTAGACGGCAATGACCGATGTGGCAACGGAGAGACCGCAACAGAAACATCGACGAATTTGAACTTCCACTTTTGCCATGCTAGAAAAAATTGGAAGTTTTGAAATTGTTTTTTTAGAATACAATTATAAACTAAGAAAAAAGAGTACAAAATGTTTGGGATATTTACCGTAAAACATATAATAGAAGTGCCCTCACATTGTCTAGTCTTCAGATATCTCGATTTCTGTGCAAGATATCAAGAATGTGTTAACTGATAAAACACTTCTGATGTTGTGATAAGCAATTTATCAGTTGTCTACTGTTTGCTTTCTTTTACAGAAAATGAGATAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTAGGGGAAATACGGTAAATTAACCGAAAAGTAGGTATCAAATTAGATAAAAAGAACAATTTTTCTGATTGTAAGAGAACAATTGATAAATACATAGAATTGGAAAGAAGAGATGAAACACCAAATAAAAGAAAAAGAATCGTATTTGTCCTAGTTTTTTGTTCAGAAGAAGAAGCCATCAAATAATAGGTTTGACAAGACTGATCAGAACAAGTATTGATAAGGGAGAACTGATATTCAAGGTCAAAAACTTTGGCCCAAAACTTTTCTATTTGAAGATAAAGATGAAGACGTGAGAATTTCTAAGGAT</canonical>
            <polymorphic>ACAATCTCAAAAATTCCAATTCATTGTTTTCCATTTTACTTTTCATTAATATCTTCTGTACATTATTTTCTTCTTCTCTAACTTCTGATTTTCTGTCACTCCCCCCAACGGACCTATAAATCAAAAGAGATTGGCTTCCTCCGATGGCAATAGGCCTCCCTATTACGGGTTGTGTAATATTACGGTGAACTGGATTCCTGTTTTTATACAAGTGATTAGAAAAGAAAAGAAGAAGTGAGAAGAAGAAGAAGAAGGCGTTAGGAAAAAAGAGGCGTGGCTCATTTTGATTTTAGGGAATTGATTGGAAATCAAACTTACGAATGTGTAGACGGCAATGACCGATGTGGCAACGGAGAGACCGCAACAGAAACATCGACGAATTTGAACTTCCACTTTTGCCATGCTAGAAAAAATTGGAAGTTTTGAAATTGTTTTTTTAGAATACAATTATAAACTAAGAAAAAAGAGTACAAAATGTTTGGGATATTTACCGTAAAACMTATAATAGAAGTGCCCTCACATTGTCTAGTCTTCAGATATCTCGATTTCTGTGCAAGATATCAAGAATGTGTTAACTGATAAAACACTTCTGATGTTGTGATAAGCAATTTATCAGTTGTCTACTGTTTGCTTTCTTTTACAGAAAATGAGATAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTAGGGGAAATACGGTAAATTAACCGAAAAGTAGGTATCAAATTAGATAAAAAGAACAATTTTTCTGATTGTAAGAGAACAATTGATAAATACATAGAATTGGAAAGAAGAGATGAAACACCAAATAAAAGAAAAAGAATCGTATTTGTCCTAGTTTTTTGTTCAGAAGAAGAAGCCATCAAATAATAGGTTTGACAAGACTGATCAGAACAAGTATTGATAAGGGAGAACTGATATTCAAGGTCAAAAACTTTGGCCCAAAACTTTTCTATTTGAAGATAAAGATGAAGACGTGAGAATTTCTAAGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAAGTTTTGAAATTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGATACCTACTTTTCGGTTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>316</pcr_amplicon_size>
		<canonical_amplicon>TGGAAGTTTTGAAATTGTTTTTTTAGAATACAATTATAAACTAAGAAAAAAGAGTACAAAATGTTTGGGATATTTACCGTAAAACATATAATAGAAGTGCCCTCACATTGTCTAGTCTTCAGATATCTCGATTTCTGTGCAAGATATCAAGAATGTGTTAACTGATAAAACACTTCTGATGTTGTGATAAGCAATTTATCAGTTGTCTACTGTTTGCTTTCTTTTACAGAAAATGAGATAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTAGGGGAAATACGGTAAATTAACCGAAAAGTAGGTATCA</canonical_amplicon>
		<polymorphic_amplicon>TGGAAGTTTTGAAATTGTTTTTTTAGAATACAATTATAAACTAAGAAAAAAGAGTACAAAATGTTTGGGATATTTACCGTAAAACMTATAATAGAAGTGCCCTCACATTGTCTAGTCTTCAGATATCTCGATTTCTGTGCAAGATATCAAGAATGTGTTAACTGATAAAACACTTCTGATGTTGTGATAAGCAATTTATCAGTTGTCTACTGTTTGCTTTCTTTTACAGAAAATGAGATAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTAGGGGAAATACGGTAAATTAACCGAAAAGTAGGTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32900</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>120591</contig_pos>
        <strand></strand>
        <context>actgtttgct[T/G]tcttttacag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AACACTTCTGATGTTGTGATAAGCAATTTATCAGTTGTCTACTGTTTGCT</left_flank>
        <right_flank>TCTTTTACAGAAAATGAGATAATTGAGCTCAAAGTTGACGGTTTGGGTGG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTCCTCCGATGGCAATAGGCCTCCCTATTACGGGTTGTGTAATATTACGGTGAACTGGATTCCTGTTTTTATACAAGTGATTAGAAAAGAAAAGAAGAAGTGAGAAGAAGAAGAAGAAGGCGTTAGGAAAAAAGAGGCGTGGCTCATTTTGATTTTAGGGAATTGATTGGAAATCAAACTTACGAATGTGTAGACGGCAATGACCGATGTGGCAACGGAGAGACCGCAACAGAAACATCGACGAATTTGAACTTCCACTTTTGCCATGCTAGAAAAAATTGGAAGTTTTGAAATTGTTTTTTTAGAATACAATTATAAACTAAGAAAAAAGAGTACAAAATGTTTGGGATATTTACCGTAAAACATATAATAGAAGTGCCCTCACATTGTCTAGTCTTCAGATATCTCGATTTCTGTGCAAGATATCAAGAATGTGTTAACTGATAAAACACTTCTGATGTTGTGATAAGCAATTTATCAGTTGTCTACTGTTTGCTTTCTTTTACAGAAAATGAGATAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTAGGGGAAATACGGTAAATTAACCGAAAAGTAGGTATCAAATTAGATAAAAAGAACAATTTTTCTGATTGTAAGAGAACAATTGATAAATACATAGAATTGGAAAGAAGAGATGAAACACCAAATAAAAGAAAAAGAATCGTATTTGTCCTAGTTTTTTGTTCAGAAGAAGAAGCCATCAAATAATAGGTTTGACAAGACTGATCAGAACAAGTATTGATAAGGGAGAACTGATATTCAAGGTCAAAAACTTTGGCCCAAAACTTTTCTATTTGAAGATAAAGATGAAGACGTGAGAATTTCTAAGGATACACACTTGAGGAAAGTGAACTTGAAACTGGAAAAAACCCGATCAGATTTGAAAAAGATTGGAAAAGGAATGGAAGAATAAAAAGCAAAGAATATGGAAATAGTGACCTCAAATGAATATCCCCCACTGAGCT</canonical>
            <polymorphic>GCTTCCTCCGATGGCAATAGGCCTCCCTATTACGGGTTGTGTAATATTACGGTGAACTGGATTCCTGTTTTTATACAAGTGATTAGAAAAGAAAAGAAGAAGTGAGAAGAAGAAGAAGAAGGCGTTAGGAAAAAAGAGGCGTGGCTCATTTTGATTTTAGGGAATTGATTGGAAATCAAACTTACGAATGTGTAGACGGCAATGACCGATGTGGCAACGGAGAGACCGCAACAGAAACATCGACGAATTTGAACTTCCACTTTTGCCATGCTAGAAAAAATTGGAAGTTTTGAAATTGTTTTTTTAGAATACAATTATAAACTAAGAAAAAAGAGTACAAAATGTTTGGGATATTTACCGTAAAACATATAATAGAAGTGCCCTCACATTGTCTAGTCTTCAGATATCTCGATTTCTGTGCAAGATATCAAGAATGTGTTAACTGATAAAACACTTCTGATGTTGTGATAAGCAATTTATCAGTTGTCTACTGTTTGCTKTCTTTTACAGAAAATGAGATAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTAGGGGAAATACGGTAAATTAACCGAAAAGTAGGTATCAAATTAGATAAAAAGAACAATTTTTCTGATTGTAAGAGAACAATTGATAAATACATAGAATTGGAAAGAAGAGATGAAACACCAAATAAAAGAAAAAGAATCGTATTTGTCCTAGTTTTTTGTTCAGAAGAAGAAGCCATCAAATAATAGGTTTGACAAGACTGATCAGAACAAGTATTGATAAGGGAGAACTGATATTCAAGGTCAAAAACTTTGGCCCAAAACTTTTCTATTTGAAGATAAAGATGAAGACGTGAGAATTTCTAAGGATACACACTTGAGGAAAGTGAACTTGAAACTGGAAAAAACCCGATCAGATTTGAAAAAGATTGGAAAAGGAATGGAAGAATAAAAAGCAAAGAATATGGAAATAGTGACCTCAAATGAATATCCCCCACTGAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTACAAAATGTTTGGGATATTT</pcr_primer_p1>
		<pcr_primer_p2>TGATACCTACTTTTCGGTTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>GAGTACAAAATGTTTGGGATATTTACCGTAAAACATATAATAGAAGTGCCCTCACATTGTCTAGTCTTCAGATATCTCGATTTCTGTGCAAGATATCAAGAATGTGTTAACTGATAAAACACTTCTGATGTTGTGATAAGCAATTTATCAGTTGTCTACTGTTTGCTTTCTTTTACAGAAAATGAGATAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTAGGGGAAATACGGTAAATTAACCGAAAAGTAGGTATCA</canonical_amplicon>
		<polymorphic_amplicon>GAGTACAAAATGTTTGGGATATTTACCGTAAAACATATAATAGAAGTGCCCTCACATTGTCTAGTCTTCAGATATCTCGATTTCTGTGCAAGATATCAAGAATGTGTTAACTGATAAAACACTTCTGATGTTGTGATAAGCAATTTATCAGTTGTCTACTGTTTGCTKTCTTTTACAGAAAATGAGATAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTAGGGGAAATACGGTAAATTAACCGAAAAGTAGGTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32901</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>120742</contig_pos>
        <strand>+</strand>
        <context>TGATAAATAC[A/C]TAGAATTGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAGATAAAAAGAACAATTTTTCTGATTGTAAGAGAACAATTGATAAATAC</left_flank>
        <right_flank>TAGAATTGGAAAGAAGAGATGAAACACCAAATAAAAGAAAAAGAATCGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATTTTAGGGAATTGATTGGAAATCAAACTTACGAATGTGTAGACGGCAATGACCGATGTGGCAACGGAGAGACCGCAACAGAAACATCGACGAATTTGAACTTCCACTTTTGCCATGCTAGAAAAAATTGGAAGTTTTGAAATTGTTTTTTTAGAATACAATTATAAACTAAGAAAAAAGAGTACAAAATGTTTGGGATATTTACCGTAAAACATATAATAGAAGTGCCCTCACATTGTCTAGTCTTCAGATATCTCGATTTCTGTGCAAGATATCAAGAATGTGTTAACTGATAAAACACTTCTGATGTTGTGATAAGCAATTTATCAGTTGTCTACTGTTTGCTTTCTTTTACAGAAAATGAGATAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTAGGGGAAATACGGTAAATTAACCGAAAAGTAGGTATCAAATTAGATAAAAAGAACAATTTTTCTGATTGTAAGAGAACAATTGATAAATACATAGAATTGGAAAGAAGAGATGAAACACCAAATAAAAGAAAAAGAATCGTATTTGTCCTAGTTTTTTGTTCAGAAGAAGAAGCCATCAAATAATAGGTTTGACAAGACTGATCAGAACAAGTATTGATAAGGGAGAACTGATATTCAAGGTCAAAAACTTTGGCCCAAAACTTTTCTATTTGAAGATAAAGATGAAGACGTGAGAATTTCTAAGGATACACACTTGAGGAAAGTGAACTTGAAACTGGAAAAAACCCGATCAGATTTGAAAAAGATTGGAAAAGGAATGGAAGAATAAAAAGCAAAGAATATGGAAATAGTGACCTCAAATGAATATCCCCCACTGAGCTTGGAGGGCCTGGGAGGGTTGTATAAACAGAATACAACTTCAAGGATTGCGGGGGATTGAGATACAAATGTAAAATCAAGAATAGGAGTAATAAAAAGTCGAAATTGGAGGAAAAAGAGAGGGGGAGACTAAACAACAAAACCAAGATAATC</canonical>
            <polymorphic>TGATTTTAGGGAATTGATTGGAAATCAAACTTACGAATGTGTAGACGGCAATGACCGATGTGGCAACGGAGAGACCGCAACAGAAACATCGACGAATTTGAACTTCCACTTTTGCCATGCTAGAAAAAATTGGAAGTTTTGAAATTGTTTTTTTAGAATACAATTATAAACTAAGAAAAAAGAGTACAAAATGTTTGGGATATTTACCGTAAAACATATAATAGAAGTGCCCTCACATTGTCTAGTCTTCAGATATCTCGATTTCTGTGCAAGATATCAAGAATGTGTTAACTGATAAAACACTTCTGATGTTGTGATAAGCAATTTATCAGTTGTCTACTGTTTGCTTTCTTTTACAGAAAATGAGATAATTGAGCTCAAAGTTGACGGTTTGGGTGGACTTCCATTAGGGGAAATACGGTAAATTAACCGAAAAGTAGGTATCAAATTAGATAAAAAGAACAATTTTTCTGATTGTAAGAGAACAATTGATAAATACMTAGAATTGGAAAGAAGAGATGAAACACCAAATAAAAGAAAAAGAATCGTATTTGTCCTAGTTTTTTGTTCAGAAGAAGAAGCCATCAAATAATAGGTTTGACAAGACTGATCAGAACAAGTATTGATAAGGGAGAACTGATATTCAAGGTCAAAAACTTTGGCCCAAAACTTTTCTATTTGAAGATAAAGATGAAGACGTGAGAATTTCTAAGGATACACACTTGAGGAAAGTGAACTTGAAACTGGAAAAAACCCGATCAGATTTGAAAAAGATTGGAAAAGGAATGGAAGAATAAAAAGCAAAGAATATGGAAATAGTGACCTCAAATGAATATCCCCCACTGAGCTTGGAGGGCCTGGGAGGGTTGTATAAACAGAATACAACTTCAAGGATTGCGGGGGATTGAGATACAAATGTAAAATCAAGAATAGGAGTAATAAAAAGTCGAAATTGGAGGAAAAAGAGAGGGGGAGACTAAACAACAAAACCAAGATAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAACCGAAAAGTAGGTATCAAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTTTTTGACCTTGAATATC</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TTAACCGAAAAGTAGGTATCAAATTAGATAAAAAGAACAATTTTTCTGATTGTAAGAGAACAATTGATAAATACATAGAATTGGAAAGAAGAGATGAAACACCAAATAAAAGAAAAAGAATCGTATTTGTCCTAGTTTTTTGTTCAGAAGAAGAAGCCATCAAATAATAGGTTTGACAAGACTGATCAGAACAAGTATTGATAAGGGAGAACTGATATTCAAGGTCAAAAACTTTG</canonical_amplicon>
		<polymorphic_amplicon>TTAACCGAAAAGTAGGTATCAAATTAGATAAAAAGAACAATTTTTCTGATTGTAAGAGAACAATTGATAAATACMTAGAATTGGAAAGAAGAGATGAAACACCAAATAAAAGAAAAAGAATCGTATTTGTCCTAGTTTTTTGTTCAGAAGAAGAAGCCATCAAATAATAGGTTTGACAAGACTGATCAGAACAAGTATTGATAAGGGAGAACTGATATTCAAGGTCAAAAACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32902</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>122395</contig_pos>
        <strand>+</strand>
        <context>AGTGAAATAA[A/G]GTGAAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTTTAAGACGGGCGTGGCTTTGGAATGGCATCTTTTAGAGTGAAATAA</left_flank>
        <right_flank>GTGAAAAAAACGACGATGACGATGAAATAAACATTGGAAAACGGGGGGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAAACGTAAAATTAATACAAAACCTTCATGTCCAAAATATGATTTGCAAGAAAATTGAGAAATTCCTCCACTAAAACCCCAATTTTTCACTGACCCTGTTCTCTTAAATGACTTTCTCGAAAAGCGAAAAATTGAGTGAAACGATTTTCCCCTAAATAGTGGTATGTACTACTCCCAGTGAAAGTGTTTTTTTTCTAATTGTATACCAAACCAAAACACGAAATAGTTTCTTTTCTAATTTCTCATAAAAGGCAAATGCGGTCAGGGAAAAGATGAAAGGAAAATTCAGATGAAAACGGAAATGCTTTCCGAGGTGAACCAAAACTTTTTTGGAACCTTTTTGTCATGTCTAATGGATGGTCATTGACTTTCGTCTAACTTGATAAATAACTTTTTAGGTTCCAAGGTTCTTTCTTTGTTCAGTTTTTTCATCCATTTTTTCATCCATTTTAAGACGGGCGTGGCTTTGGAATGGCATCTTTTAGAGTGAAATAAAGTGAAAAAAACGACGATGACGATGAAATAAACATTGGAAAACGGGGGGATAAGACCTCAACAATGACACAACGCTTCTGGTTTCAGAGAGAGGACGAAACCTGTCGGATTTTCGATTTTTTGTATTATGGATGGAAAAATGTAAAATGGCAATGAAGTGAAGAAGATGGAATATTCAAATTATGTTGCAAATGTTTTTGAGGGAGAAAAAAAGAACTGCAAGAAAAAAAAATTCCGGAAAAGCAAAACTAGAAATAAAAAGCTGAAACGGAAATAATATATCATCTAGTCAAACTCGGAAACCTAAAATTTGAAAAGATGCATATAATTGATATTCAACTTTGGTTGAAAATTGAATTACAGAAATATCTTATCAGAAATATAATATCGTAAACCTGTACTAGAAGGGCCTCTAACTTCAAACTTTGAGCCAGTTCATCTCGGTTCCTGTCAAAGACATAAAAAAGCTGTCAATTGATAAATTGTTTATCATAATATCAG</canonical>
            <polymorphic>AAAAAAAACGTAAAATTAATACAAAACCTTCATGTCCAAAATATGATTTGCAAGAAAATTGAGAAATTCCTCCACTAAAACCCCAATTTTTCACTGACCCTGTTCTCTTAAATGACTTTCTCGAAAAGCGAAAAATTGAGTGAAACGATTTTCCCCTAAATAGTGGTATGTACTACTCCCAGTGAAAGTGTTTTTTTTCTAATTGTATACCAAACCAAAACACGAAATAGTTTCTTTTCTAATTTCTCATAAAAGGCAAATGCGGTCAGGGAAAAGATGAAAGGAAAATTCAGATGAAAACGGAAATGCTTTCCGAGGTGAACCAAAACTTTTTTGGAACCTTTTTGTCATGTCTAATGGATGGTCATTGACTTTCGTCTAACTTGATAAATAACTTTTTAGGTTCCAAGGTTCTTTCTTTGTTCAGTTTTTTCATCCATTTTTTCATCCATTTTAAGACGGGCGTGGCTTTGGAATGGCATCTTTTAGAGTGAAATAARGTGAAAAAAACGACGATGACGATGAAATAAACATTGGAAAACGGGGGGATAAGACCTCAACAATGACACAACGCTTCTGGTTTCAGAGAGAGGACGAAACCTGTCGGATTTTCGATTTTTTGTATTATGGATGGAAAAATGTAAAATGGCAATGAAGTGAAGAAGATGGAATATTCAAATTATGTTGCAAATGTTTTTGAGGGAGAAAAAAAGAACTGCAAGAAAAAAAAATTCCGGAAAAGCAAAACTAGAAATAAAAAGCTGAAACGGAAATAATATATCATCTAGTCAAACTCGGAAACCTAAAATTTGAAAAGATGCATATAATTGATATTCAACTTTGGTTGAAAATTGAATTACAGAAATATCTTATCAGAAATATAATATCGTAAACCTGTACTAGAAGGGCCTCTAACTTCAAACTTTGAGCCAGTTCATCTCGGTTCCTGTCAAAGACATAAAAAAGCTGTCAATTGATAAATTGTTTATCATAATATCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACTTTTTAGGTTCCAAGGTTC</pcr_primer_p1>
		<pcr_primer_p2>ACATTTTTCCATCCATAATACAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAACTTTTTAGGTTCCAAGGTTCTTTCTTTGTTCAGTTTTTTCATCCATTTTTTCATCCATTTTAAGACGGGCGTGGCTTTGGAATGGCATCTTTTAGAGTGAAATAAAGTGAAAAAAACGACGATGACGATGAAATAAACATTGGAAAACGGGGGGATAAGACCTCAACAATGACACAACGCTTCTGGTTTCAGAGAGAGGACGAAACCTGTCGGATTTTCGATTTTTTGTATTATGGATGGAAAAATGT</canonical_amplicon>
		<polymorphic_amplicon>TAACTTTTTAGGTTCCAAGGTTCTTTCTTTGTTCAGTTTTTTCATCCATTTTTTCATCCATTTTAAGACGGGCGTGGCTTTGGAATGGCATCTTTTAGAGTGAAATAARGTGAAAAAAACGACGATGACGATGAAATAAACATTGGAAAACGGGGGGATAAGACCTCAACAATGACACAACGCTTCTGGTTTCAGAGAGAGGACGAAACCTGTCGGATTTTCGATTTTTTGTATTATGGATGGAAAAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32904</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>125730</contig_pos>
        <strand>+</strand>
        <context>GGGTCCTCCA[A/G]AGGTACCTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAGCCAAAATGTTCTGAGTGAAGGGTCTCTGTAATAGAAGGGTCCTCCA</left_flank>
        <right_flank>AGGTACCTTGGAAGTTCCAAGTTAGAACAATAGAAGGTCCGGCCCTTCTA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTTGAAACGGATAGGTTTCAGTAGTATTTTTCAATAGGCCCAAGTCCAACTTCTGGACCGATCTTCGTATTCCGATTCTTAATTTTTGGCTTCAAATTTTTCGGTCCAATGCTCGATCGTATAGACAGTAGAAGGTCCTTCTTTGTCTATTTCGTCCAATTTCTTGTGAATATAGTGGTGTTTCAAACCAGAAAGGAGTAAAAATAGAATGTCATTTTGAAAGTGTGGGCGGTAAGGGACGGAAGCAGGCGGCATGCTCGCGAACGGCAAGAAGAACGGATGAGGCAAAATGTATATAGCAAGTCCGTGAGATACTCTATCCAACAAAAAAAGCATTCACCAAGAAAAACTATCCCACTGCTTAGATACATCTCAAAGTTGAGCATTGAAAATCGAAAGAAACTTATGTGCCAACCTAATATTTTGAAATTCGAGAATTGTTATTTTTTAGCCAAAATGTTCTGAGTGAAGGGTCTCTGTAATAGAAGGGTCCTCCAGAGGTACCTTGGAAGTTCCAAGTTAGAACAATAGAAGGTCCGGCCCTTCTAATGCAGGTTTTACGATATTCCGATTTCACAGTGTTATGTCACTCCAAAGTCTGTTATTTTATAATTAGGATTTTTTTTTTCAAAATAGGACCCAATGAGAAATCATCTGAGAATTTAGCTGAAAACAAATTCTTCGAGCATAGTCTCAGGGTCTGAACACAATACTACCTCGGTAGATTTGTCCTTTTGCTACCCAGTGAATTTAACCAACAATAAGAAAATAGGTTTTACTACCTATGAATCATTCCCGTAAAGAACAAAACTCTCATATCGAAGGTATGTTGTGCTCTTTCTAAATTGAGATGATTACACAACTGATTCTGCATATTTGAGATTATGATTTTTCCTCGTTGTCAATAATTTGGAAAAAAGTTTTGCTTTTATTTTTCTTCTAAATTCCATACTTTCCATCCTTCTAACAGTTAAAATACCGATTGGATATAGGCAATC</canonical>
            <polymorphic>GGTTTGAAACGGATAGGTTTCAGTAGTATTTTTCAATAGGCCCAAGTCCAACTTCTGGACCGATCTTCGTATTCCGATTCTTAATTTTTGGCTTCAAATTTTTCGGTCCAATGCTCGATCGTATAGACAGTAGAAGGTCCTTCTTTGTCTATTTCGTCCAATTTCTTGTGAATATAGTGGTGTTTCAAACCAGAAAGGAGTAAAAATAGAATGTCATTTTGAAAGTGTGGGCGGTAAGGGACGGAAGCAGGCGGCATGCTCGCGAACGGCAAGAAGAACGGATGAGGCAAAATGTATATAGCAAGTCCGTGAGATACTCTATCCAACAAAAAAAGCATTCACCAAGAAAAACTATCCCACTGCTTAGATACATCTCAAAGTTGAGCATTGAAAATCGAAAGAAACTTATGTGCCAACCTAATATTTTGAAATTCGAGAATTGTTATTTTTTAGCCAAAATGTTCTGAGTGAAGGGTCTCTGTAATAGAAGGGTCCTCCARAGGTACCTTGGAAGTTCCAAGTTAGAACAATAGAAGGTCCGGCCCTTCTAATGCAGGTTTTACGATATTCCGATTTCACAGTGTTATGTCACTCCAAAGTCTGTTATTTTATAATTAGGATTTTTTTTTTCAAAATAGGACCCAATGAGAAATCATCTGAGAATTTAGCTGAAAACAAATTCTTCGAGCATAGTCTCAGGGTCTGAACACAATACTACCTCGGTAGATTTGTCCTTTTGCTACCCAGTGAATTTAACCAACAATAAGAAAATAGGTTTTACTACCTATGAATCATTCCCGTAAAGAACAAAACTCTCATATCGAAGGTATGTTGTGCTCTTTCTAAATTGAGATGATTACACAACTGATTCTGCATATTTGAGATTATGATTTTTCCTCGTTGTCAATAATTTGGAAAAAAGTTTTGCTTTTATTTTTCTTCTAAATTCCATACTTTCCATCCTTCTAACAGTTAAAATACCGATTGGATATAGGCAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>503 206 173 63 55</canonical_bands>
                <polymorphic_bands>566 206 173 55</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAATTCGAGAATTGTTATT</pcr_primer_p1>
		<pcr_primer_p2>CAGCTAAATTCTCAGATGATTTCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAATTCGAGAATTGTTATTTTTTAGCCAAAATGTTCTGAGTGAAGGGTCTCTGTAATAGAAGGGTCCTCCAGAGGTACCTTGGAAGTTCCAAGTTAGAACAATAGAAGGTCCGGCCCTTCTAATGCAGGTTTTACGATATTCCGATTTCACAGTGTTATGTCACTCCAAAGTCTGTTATTTTATAATTAGGATTTTTTTTTTCAAAATAGGACCCAATGAGAAATCATCTGAGAATTTAGCTG</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAATTCGAGAATTGTTATTTTTTAGCCAAAATGTTCTGAGTGAAGGGTCTCTGTAATAGAAGGGTCCTCCARAGGTACCTTGGAAGTTCCAAGTTAGAACAATAGAAGGTCCGGCCCTTCTAATGCAGGTTTTACGATATTCCGATTTCACAGTGTTATGTCACTCCAAAGTCTGTTATTTTATAATTAGGATTTTTTTTTTCAAAATAGGACCCAATGAGAAATCATCTGAGAATTTAGCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32905</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>145196</contig_pos>
        <strand></strand>
        <context>tacagtttct[C/T]aaatttaaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAGTTTTAGAATTCCAGAATCTCAGAATTTCAGTAATTTTACAGTTTCT</left_flank>
        <right_flank>AAATTTAAAACTTCAGACATCTAAAATTTCAGAATTCCAGAATTTCGGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGATTTATATACACTAGTTTTTTTCTTTGTTACTTTAAATGCTCCGACATAGTAACGCATGATAAGATTTCTTATTGGATTAATATGAAATGAAACAATCAGTCTTCTAGTTTTCAAAAGTCTGAAAAAGACAAACTAACCTGCAAGTCCGAAGAACAGTACAGTAAGGTTTGAGTGGCGCATGGCTTCCGACGTTCAGTCTTCTTTTCTGAAACAAAAAAGAAGAAGTGGTCGATGTGAATATTAGAATGAGTAGAAACGGGAGCAACAAGAGTGTCGAGATGGAAATGGGCGGAGCTTCAAGAGCATATACGGGAGGGGCGGGGCTTACGGGAGGATTGAGGGGAAAAGAGAAAGAGTGGGAAAGGGAGGAAAAGACGAAGGAAAAAGAAAGAATAATGAAAAAGGACTTTAAAAGAATTGGGCTTATGAAATCATGATTTTTAAATGAGTTTTAGAATTCCAGAATCTCAGAATTTCAGTAATTTTACAGTTTCTCAAATTTAAAACTTCAGACATCTAAAATTTCAGAATTCCAGAATTTCGGAATTTCAGAAATACAGAAATCACTAGTTATAGATCTTTAGACCTTCGAAATTTCGAAGTTCCAAGAATCCAGAACTTCGAGTTTCTGACATTCAGAATTCCAGATTTTCATAACTTCAGATTTCCAAAGTTTCATAATTTCAGGATTTCAGAATCTCAGATTTTCAGAATAAAAAACGAATTTAGCGTTGATATATTCAAAAAAACCCATCTCAGAAAGTATGTCAACTCGAATCATTATTAGAATTCAAGAAAAATTTTTCAGGAAAATCGCCGGAAATGTACGATCTATTCAGAGCGTACAACCATCTTTCTGATTGAAAACAACGGGAAACTTTTAAACGTCCGAAGATGACCAAAAATCTCTGAAAAATTCAGATTCCCACATACACTATTGAAATTCTCGAGCCCCAGAACGTCTAATTCAAAGAAATCGAAAATTTTGAGCTTCTA</canonical>
            <polymorphic>ATGATTTATATACACTAGTTTTTTTCTTTGTTACTTTAAATGCTCCGACATAGTAACGCATGATAAGATTTCTTATTGGATTAATATGAAATGAAACAATCAGTCTTCTAGTTTTCAAAAGTCTGAAAAAGACAAACTAACCTGCAAGTCCGAAGAACAGTACAGTAAGGTTTGAGTGGCGCATGGCTTCCGACGTTCAGTCTTCTTTTCTGAAACAAAAAAGAAGAAGTGGTCGATGTGAATATTAGAATGAGTAGAAACGGGAGCAACAAGAGTGTCGAGATGGAAATGGGCGGAGCTTCAAGAGCATATACGGGAGGGGCGGGGCTTACGGGAGGATTGAGGGGAAAAGAGAAAGAGTGGGAAAGGGAGGAAAAGACGAAGGAAAAAGAAAGAATAATGAAAAAGGACTTTAAAAGAATTGGGCTTATGAAATCATGATTTTTAAATGAGTTTTAGAATTCCAGAATCTCAGAATTTCAGTAATTTTACAGTTTCTYAAATTTAAAACTTCAGACATCTAAAATTTCAGAATTCCAGAATTTCGGAATTTCAGAAATACAGAAATCACTAGTTATAGATCTTTAGACCTTCGAAATTTCGAAGTTCCAAGAATCCAGAACTTCGAGTTTCTGACATTCAGAATTCCAGATTTTCATAACTTCAGATTTCCAAAGTTTCATAATTTCAGGATTTCAGAATCTCAGATTTTCAGAATAAAAAACGAATTTAGCGTTGATATATTCAAAAAAACCCATCTCAGAAAGTATGTCAACTCGAATCATTATTAGAATTCAAGAAAAATTTTTCAGGAAAATCGCCGGAAATGTACGATCTATTCAGAGCGTACAACCATCTTTCTGATTGAAAACAACGGGAAACTTTTAAACGTCCGAAGATGACCAAAAATCTCTGAAAAATTCAGATTCCCACATACACTATTGAAATTCTCGAGCCCCAGAACGTCTAATTCAAAGAAATCGAAAATTTTGAGCTTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAATTGGGCTTATGAAATC</pcr_primer_p1>
		<pcr_primer_p2>ATATCAACGCTAAATTCGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>326</pcr_amplicon_size>
		<canonical_amplicon>AAGAATTGGGCTTATGAAATCATGATTTTTAAATGAGTTTTAGAATTCCAGAATCTCAGAATTTCAGTAATTTTACAGTTTCTCAAATTTAAAACTTCAGACATCTAAAATTTCAGAATTCCAGAATTTCGGAATTTCAGAAATACAGAAATCACTAGTTATAGATCTTTAGACCTTCGAAATTTCGAAGTTCCAAGAATCCAGAACTTCGAGTTTCTGACATTCAGAATTCCAGATTTTCATAACTTCAGATTTCCAAAGTTTCATAATTTCAGGATTTCAGAATCTCAGATTTTCAGAATAAAAAACGAATTTAGCGTTGATAT</canonical_amplicon>
		<polymorphic_amplicon>AAGAATTGGGCTTATGAAATCATGATTTTTAAATGAGTTTTAGAATTCCAGAATCTCAGAATTTCAGTAATTTTACAGTTTCTYAAATTTAAAACTTCAGACATCTAAAATTTCAGAATTCCAGAATTTCGGAATTTCAGAAATACAGAAATCACTAGTTATAGATCTTTAGACCTTCGAAATTTCGAAGTTCCAAGAATCCAGAACTTCGAGTTTCTGACATTCAGAATTCCAGATTTTCATAACTTCAGATTTCCAAAGTTTCATAATTTCAGGATTTCAGAATCTCAGATTTTCAGAATAAAAAACGAATTTAGCGTTGATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32906</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>164025</contig_pos>
        <strand>+</strand>
        <context>TCCCCTCTAC[A/T]AATTCTCTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTTGATCAAGTAGTCAAGGAGGTTGGAATCAAGAATTGATCCCCTCTAC</left_flank>
        <right_flank>AATTCTCTCTTTGAAGTTTCAATTTCTTAACAATAAAGTTGTCAAACCGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGGAGACCTGCTTCAAGACTTTGAATCCAAAACTTCTGGATTCCGCTTGAGCTCAATATCAACTCGGAACGTATTCAAATTCCCGTCTAATTTCACACTATTTCCCCACTATCACTACATGATCTCAAACAAGAAACGGTCAAGGAAAACGAGTCTTAAGGGAGAATACGGGAAAAGTTTCAGCAGGTTGGTAAACGTTCATCTGGAATCTGTAATTATTTATTTTTATTTTCAGCACATCAACAGTTGCCACAGTTTTCAACCACTTTGCTCTTCACAAACTGTCTCCTGCTGTCGCTAAATCTCAATATTTCTTGGCATCAGAAGCTGTAAAACTTCATTACAAGTCTGAATGTCCATGGGAATCGAAAAAGGAATGCCATCAGTTACAAACCGATGTAATCGATGATACCAGTTTGGATCGTTTCGAGCGGAATCTCAGAAATCGGGTTGATCAAGTAGTCAAGGAGGTTGGAATCAAGAATTGATCCCCTCTACAAATTCTCTCTTTGAAGTTTCAATTTCTTAACAATAAAGTTGTCAAACCGATTAAATTTACACTTTATTCTTCTGCGAACTCATTCACTTTCTACTCTGCATAATCCCTCAGAAATCAATGAGACGAATGAGAGTAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAACTGTCGTTTGCGCGAATTGGTGTCATATCAAGTTGAGCTCTGAGCAATCCCTTCTCCCCTCGCCGTTCCATTCATTACACATTCATTTTGAATCCTCTCTGAAGGAGAATCCAGGAACTCTAGGAGATAGATTTTCCTGAATATTATTATGAACAGCTAAACGGTTTTGCTATAATGTTCTTTACATCTTCGATGCGTCATGCATCACCAACGACTACGGTATTGGCTGATGGCTACACGGATGATGCGCTTGGAAGCAAATACGATAATTTTCGGTGAGCCTTGTTTTTTTGTTTATCAGGACGCATTGTGATTTTTCAGTTGT</canonical>
            <polymorphic>CAGGAGACCTGCTTCAAGACTTTGAATCCAAAACTTCTGGATTCCGCTTGAGCTCAATATCAACTCGGAACGTATTCAAATTCCCGTCTAATTTCACACTATTTCCCCACTATCACTACATGATCTCAAACAAGAAACGGTCAAGGAAAACGAGTCTTAAGGGAGAATACGGGAAAAGTTTCAGCAGGTTGGTAAACGTTCATCTGGAATCTGTAATTATTTATTTTTATTTTCAGCACATCAACAGTTGCCACAGTTTTCAACCACTTTGCTCTTCACAAACTGTCTCCTGCTGTCGCTAAATCTCAATATTTCTTGGCATCAGAAGCTGTAAAACTTCATTACAAGTCTGAATGTCCATGGGAATCGAAAAAGGAATGCCATCAGTTACAAACCGATGTAATCGATGATACCAGTTTGGATCGTTTCGAGCGGAATCTCAGAAATCGGGTTGATCAAGTAGTCAAGGAGGTTGGAATCAAGAATTGATCCCCTCTACWAATTCTCTCTTTGAAGTTTCAATTTCTTAACAATAAAGTTGTCAAACCGATTAAATTTACACTTTATTCTTCTGCGAACTCATTCACTTTCTACTCTGCATAATCCCTCAGAAATCAATGAGACGAATGAGAGTAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAACTGTCGTTTGCGCGAATTGGTGTCATATCAAGTTGAGCTCTGAGCAATCCCTTCTCCCCTCGCCGTTCCATTCATTACACATTCATTTTGAATCCTCTCTGAAGGAGAATCCAGGAACTCTAGGAGATAGATTTTCCTGAATATTATTATGAACAGCTAAACGGTTTTGCTATAATGTTCTTTACATCTTCGATGCGTCATGCATCACCAACGACTACGGTATTGGCTGATGGCTACACGGATGATGCGCTTGGAAGCAAATACGATAATTTTCGGTGAGCCTTGTTTTTTTGTTTATCAGGACGCATTGTGATTTTTCAGTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>447 422 78 53</canonical_bands>
                <polymorphic_bands>475 447 78</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCATTACAAGTCTGAATGTCC</pcr_primer_p1>
		<pcr_primer_p2>AGTTCGCAGAAGAATAAAGTGTA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CTTCATTACAAGTCTGAATGTCCATGGGAATCGAAAAAGGAATGCCATCAGTTACAAACCGATGTAATCGATGATACCAGTTTGGATCGTTTCGAGCGGAATCTCAGAAATCGGGTTGATCAAGTAGTCAAGGAGGTTGGAATCAAGAATTGATCCCCTCTACAAATTCTCTCTTTGAAGTTTCAATTTCTTAACAATAAAGTTGTCAAACCGATTAAATTTACACTTTATTCTTCTGCGAACT</canonical_amplicon>
		<polymorphic_amplicon>CTTCATTACAAGTCTGAATGTCCATGGGAATCGAAAAAGGAATGCCATCAGTTACAAACCGATGTAATCGATGATACCAGTTTGGATCGTTTCGAGCGGAATCTCAGAAATCGGGTTGATCAAGTAGTCAAGGAGGTTGGAATCAAGAATTGATCCCCTCTACWAATTCTCTCTTTGAAGTTTCAATTTCTTAACAATAAAGTTGTCAAACCGATTAAATTTACACTTTATTCTTCTGCGAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32907</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>164045</contig_pos>
        <strand>+</strand>
        <context>TTTGAAGTTT[C/T]AATTTCTTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGTTGGAATCAAGAATTGATCCCCTCTACAAATTCTCTCTTTGAAGTTT</left_flank>
        <right_flank>AATTTCTTAACAATAAAGTTGTCAAACCGATTAAATTTACACTTTATTCT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAATCCAAAACTTCTGGATTCCGCTTGAGCTCAATATCAACTCGGAACGTATTCAAATTCCCGTCTAATTTCACACTATTTCCCCACTATCACTACATGATCTCAAACAAGAAACGGTCAAGGAAAACGAGTCTTAAGGGAGAATACGGGAAAAGTTTCAGCAGGTTGGTAAACGTTCATCTGGAATCTGTAATTATTTATTTTTATTTTCAGCACATCAACAGTTGCCACAGTTTTCAACCACTTTGCTCTTCACAAACTGTCTCCTGCTGTCGCTAAATCTCAATATTTCTTGGCATCAGAAGCTGTAAAACTTCATTACAAGTCTGAATGTCCATGGGAATCGAAAAAGGAATGCCATCAGTTACAAACCGATGTAATCGATGATACCAGTTTGGATCGTTTCGAGCGGAATCTCAGAAATCGGGTTGATCAAGTAGTCAAGGAGGTTGGAATCAAGAATTGATCCCCTCTACAAATTCTCTCTTTGAAGTTTCAATTTCTTAACAATAAAGTTGTCAAACCGATTAAATTTACACTTTATTCTTCTGCGAACTCATTCACTTTCTACTCTGCATAATCCCTCAGAAATCAATGAGACGAATGAGAGTAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAACTGTCGTTTGCGCGAATTGGTGTCATATCAAGTTGAGCTCTGAGCAATCCCTTCTCCCCTCGCCGTTCCATTCATTACACATTCATTTTGAATCCTCTCTGAAGGAGAATCCAGGAACTCTAGGAGATAGATTTTCCTGAATATTATTATGAACAGCTAAACGGTTTTGCTATAATGTTCTTTACATCTTCGATGCGTCATGCATCACCAACGACTACGGTATTGGCTGATGGCTACACGGATGATGCGCTTGGAAGCAAATACGATAATTTTCGGTGAGCCTTGTTTTTTTGTTTATCAGGACGCATTGTGATTTTTCAGTTGTTTTTAACACAACAATTTGTA</canonical>
            <polymorphic>TTTGAATCCAAAACTTCTGGATTCCGCTTGAGCTCAATATCAACTCGGAACGTATTCAAATTCCCGTCTAATTTCACACTATTTCCCCACTATCACTACATGATCTCAAACAAGAAACGGTCAAGGAAAACGAGTCTTAAGGGAGAATACGGGAAAAGTTTCAGCAGGTTGGTAAACGTTCATCTGGAATCTGTAATTATTTATTTTTATTTTCAGCACATCAACAGTTGCCACAGTTTTCAACCACTTTGCTCTTCACAAACTGTCTCCTGCTGTCGCTAAATCTCAATATTTCTTGGCATCAGAAGCTGTAAAACTTCATTACAAGTCTGAATGTCCATGGGAATCGAAAAAGGAATGCCATCAGTTACAAACCGATGTAATCGATGATACCAGTTTGGATCGTTTCGAGCGGAATCTCAGAAATCGGGTTGATCAAGTAGTCAAGGAGGTTGGAATCAAGAATTGATCCCCTCTACAAATTCTCTCTTTGAAGTTTYAATTTCTTAACAATAAAGTTGTCAAACCGATTAAATTTACACTTTATTCTTCTGCGAACTCATTCACTTTCTACTCTGCATAATCCCTCAGAAATCAATGAGACGAATGAGAGTAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAACTGTCGTTTGCGCGAATTGGTGTCATATCAAGTTGAGCTCTGAGCAATCCCTTCTCCCCTCGCCGTTCCATTCATTACACATTCATTTTGAATCCTCTCTGAAGGAGAATCCAGGAACTCTAGGAGATAGATTTTCCTGAATATTATTATGAACAGCTAAACGGTTTTGCTATAATGTTCTTTACATCTTCGATGCGTCATGCATCACCAACGACTACGGTATTGGCTGATGGCTACACGGATGATGCGCTTGGAAGCAAATACGATAATTTTCGGTGAGCCTTGTTTTTTTGTTTATCAGGACGCATTGTGATTTTTCAGTTGTTTTTAACACAACAATTTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCATTACAAGTCTGAATGTCC</pcr_primer_p1>
		<pcr_primer_p2>AGTTCGCAGAAGAATAAAGTGTA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CTTCATTACAAGTCTGAATGTCCATGGGAATCGAAAAAGGAATGCCATCAGTTACAAACCGATGTAATCGATGATACCAGTTTGGATCGTTTCGAGCGGAATCTCAGAAATCGGGTTGATCAAGTAGTCAAGGAGGTTGGAATCAAGAATTGATCCCCTCTACAAATTCTCTCTTTGAAGTTTCAATTTCTTAACAATAAAGTTGTCAAACCGATTAAATTTACACTTTATTCTTCTGCGAACT</canonical_amplicon>
		<polymorphic_amplicon>CTTCATTACAAGTCTGAATGTCCATGGGAATCGAAAAAGGAATGCCATCAGTTACAAACCGATGTAATCGATGATACCAGTTTGGATCGTTTCGAGCGGAATCTCAGAAATCGGGTTGATCAAGTAGTCAAGGAGGTTGGAATCAAGAATTGATCCCCTCTACAAATTCTCTCTTTGAAGTTTYAATTTCTTAACAATAAAGTTGTCAAACCGATTAAATTTACACTTTATTCTTCTGCGAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32908</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>177685</contig_pos>
        <strand></strand>
        <context>ccaagggtac[A/G]tcgaaaaagg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGCAGAAAACAGTCGCACAACCCCTAGACGGCCCACGATCCAAGGGTAC</left_flank>
        <right_flank>TCGAAAAAGGGTACATCGAGGGTACATCGAACCTATTCGAATTTTTAAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGAAATTCTCTGAAAAAATCCAATTTTTTTCTGCAATTTTCTGCAAAGCGTCATCCGCTCATTTTCCATTTTCGGGCGTTTCAACGGTGCGGTCTGAAAATTGCCGATTTCAGATTTTTTTTGATAAGTCAATCTACCATTTTCTCTTCAGAATCTGAAGACGTCTGTTTTTGGTCCGAATCAAACCAGAATTATCGATATTGTCGGCTTCCGAAGACGTCAGAACCGAACTTTCAGATACAGGGGATGTCAATTTGAGATACAAAATTTTAGAATTTGTTGTCGATAATTCGTTGATTGCCAATCTTTGGATTTGGGATACCACAAAAATTAAGGAAATGTTTGATTGTTTATTTACCAGAATCAATTACATGATCTTGATTGATCCCTTCGGATATTGGAAAACCATGTGTGCCTGTGTTTCTCCAAAAGTTCTAAGCGATCAAAATGCAGAAAACAGTCGCACAACCCCTAGACGGCCCACGATCCAAGGGTACATCGAAAAAGGGTACATCGAGGGTACATCGAACCTATTCGAATTTTTAAAACTTTAGGTCCGTTGGAACATCACTTCTACAATAAAGTATGAAAATTCAACTATTCCCCGCATTGTCCGAGAAAAAATTTTCAACAGTTGTTATGATCTGAGCAGGTGAATTTTCTAAGTCAACCATCTTCCTAGATTCAGCTGGACTCAAGGTCTTTAATAAGCTAAAAAAACGAAAGTGTCACGTAGTTTTACATTTCCCATTAAAACAGTATCTCATAACTTGTCTGTCATCTCGAACTTGCCTTTCCTTTTCTCAACTACTCCAACTAAGAGTCCTTTTTTTGTTTGTCCTTGATTTTGTGTCAGTGTTATGATCCCATTTCGGGCTTGTCACCTCCTACTGAAACAATGACATTCCGCGAGGAAATTGTAAAATAAAAACTGAGAAGATGGAATTACTGTAGGGGCGGAAGATGATGGGGGAACTTATATAAAAACGAGGGAAACG</canonical>
            <polymorphic>TAGGAAATTCTCTGAAAAAATCCAATTTTTTTCTGCAATTTTCTGCAAAGCGTCATCCGCTCATTTTCCATTTTCGGGCGTTTCAACGGTGCGGTCTGAAAATTGCCGATTTCAGATTTTTTTTGATAAGTCAATCTACCATTTTCTCTTCAGAATCTGAAGACGTCTGTTTTTGGTCCGAATCAAACCAGAATTATCGATATTGTCGGCTTCCGAAGACGTCAGAACCGAACTTTCAGATACAGGGGATGTCAATTTGAGATACAAAATTTTAGAATTTGTTGTCGATAATTCGTTGATTGCCAATCTTTGGATTTGGGATACCACAAAAATTAAGGAAATGTTTGATTGTTTATTTACCAGAATCAATTACATGATCTTGATTGATCCCTTCGGATATTGGAAAACCATGTGTGCCTGTGTTTCTCCAAAAGTTCTAAGCGATCAAAATGCAGAAAACAGTCGCACAACCCCTAGACGGCCCACGATCCAAGGGTACRTCGAAAAAGGGTACATCGAGGGTACATCGAACCTATTCGAATTTTTAAAACTTTAGGTCCGTTGGAACATCACTTCTACAATAAAGTATGAAAATTCAACTATTCCCCGCATTGTCCGAGAAAAAATTTTCAACAGTTGTTATGATCTGAGCAGGTGAATTTTCTAAGTCAACCATCTTCCTAGATTCAGCTGGACTCAAGGTCTTTAATAAGCTAAAAAAACGAAAGTGTCACGTAGTTTTACATTTCCCATTAAAACAGTATCTCATAACTTGTCTGTCATCTCGAACTTGCCTTTCCTTTTCTCAACTACTCCAACTAAGAGTCCTTTTTTTGTTTGTCCTTGATTTTGTGTCAGTGTTATGATCCCATTTCGGGCTTGTCACCTCCTACTGAAACAATGACATTCCGCGAGGAAATTGTAAAATAAAAACTGAGAAGATGGAATTACTGTAGGGGCGGAAGATGATGGGGGAACTTATATAAAAACGAGGGAAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGTTCTAAGCGATCAAAATG</pcr_primer_p1>
		<pcr_primer_p2>GGAAGATGGTTGACTTAGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAGTTCTAAGCGATCAAAATGCAGAAAACAGTCGCACAACCCCTAGACGGCCCACGATCCAAGGGTACATCGAAAAAGGGTACATCGAGGGTACATCGAACCTATTCGAATTTTTAAAACTTTAGGTCCGTTGGAACATCACTTCTACAATAAAGTATGAAAATTCAACTATTCCCCGCATTGTCCGAGAAAAAATTTTCAACAGTTGTTATGATCTGAGCAGGTGAATTTTCTAAGTCAACCATCTTCC</canonical_amplicon>
		<polymorphic_amplicon>AAAGTTCTAAGCGATCAAAATGCAGAAAACAGTCGCACAACCCCTAGACGGCCCACGATCCAAGGGTACRTCGAAAAAGGGTACATCGAGGGTACATCGAACCTATTCGAATTTTTAAAACTTTAGGTCCGTTGGAACATCACTTCTACAATAAAGTATGAAAATTCAACTATTCCCCGCATTGTCCGAGAAAAAATTTTCAACAGTTGTTATGATCTGAGCAGGTGAATTTTCTAAGTCAACCATCTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32909</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>183945</contig_pos>
        <strand>+</strand>
        <context>AAGTGTCGCA[C/G]ATTTCGATAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCTCTTGTTCAATGTCATCAATGTGTTCGATAGCTTTTCGAAGTGTCGCA</left_flank>
        <right_flank>ATTTCGATAGCTTTGCATCTTCTCCGCACAACAAAACTTTTAATTGTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTAGAACTCTTCCATGCTCAAATGGAGAAGCAATTGGAGCTTTAGTGTCAGCAGATGCATGAGAAAACATTCCACTTCCAGCGAGTAATCTGAAAAAAATGTCATTCATCAAGAATATAAGAATATATCTTTTTACCCAATCGGATTGAATATCATCACTGCCAAAAGCATTGCAAACAGAGTGACTCTTGAATTGTCCTTAGTACCATTTTTAATAGGAGTTACTGTATTCATTCGAGATCTTTTTCTTTCATTTCTCGGTGGAGATGGAGATGATTCGTTTGGAGATTGAGCAGCATAGTCAACGAATTGCACTGGTTCCGGGTACTAAAATATCGAAAATCAGAACAGCGTTTCATGCTCTGATTCGATTAGATAGACCCACCGGTAACCCGTTCATCTGAAGTGTCTTTCGCATTTGTTCAACTTGATATCTCAATTGTTGATTCTCTTGTTCAATGTCATCAATGTGTTCGATAGCTTTTCGAAGTGTCGCAGATTTCGATAGCTTTGCATCTTCTCCGCACAACAAAACTTTTAATTGTTGAATTCTATCATTGATTGAGCACCTATACTTCTTTTCGATTAGATTGTGAGCAGTTCGCCTTTCGGTTTTGGGTCCTGGAAAATAAAAAATAAGAAGGTTGTATTTTTTAAATTTCAAAGAAATCTCACTCCGAATGATAACTGGTCCTTGAGAAGATGTTTCACCAGAATCACTATCGTCGTCTTCTTCGTCATCTTCTCCATCTACTGTCTCTTGTATCACTACTTTCTTCGGATAACTTTTTGATGCTGAGCTTCCCGTCTTTTTATGTTTCAATTTCTCTACTTCACTCGGGGACATATTGACTAACATCCTTAATAATTCTTCTTTCATATTCTTGGGACTAGTTGGGTTTTCTGGCGGATCTGAGAACTTCATTGGTTTTTGTTCTTTGATTTTTTCTTCAATGGGCGGAGACTCTATGGCTTCTGGATGTTCATGAATAGTTGGT</canonical>
            <polymorphic>ATCTAGAACTCTTCCATGCTCAAATGGAGAAGCAATTGGAGCTTTAGTGTCAGCAGATGCATGAGAAAACATTCCACTTCCAGCGAGTAATCTGAAAAAAATGTCATTCATCAAGAATATAAGAATATATCTTTTTACCCAATCGGATTGAATATCATCACTGCCAAAAGCATTGCAAACAGAGTGACTCTTGAATTGTCCTTAGTACCATTTTTAATAGGAGTTACTGTATTCATTCGAGATCTTTTTCTTTCATTTCTCGGTGGAGATGGAGATGATTCGTTTGGAGATTGAGCAGCATAGTCAACGAATTGCACTGGTTCCGGGTACTAAAATATCGAAAATCAGAACAGCGTTTCATGCTCTGATTCGATTAGATAGACCCACCGGTAACCCGTTCATCTGAAGTGTCTTTCGCATTTGTTCAACTTGATATCTCAATTGTTGATTCTCTTGTTCAATGTCATCAATGTGTTCGATAGCTTTTCGAAGTGTCGCASATTTCGATAGCTTTGCATCTTCTCCGCACAACAAAACTTTTAATTGTTGAATTCTATCATTGATTGAGCACCTATACTTCTTTTCGATTAGATTGTGAGCAGTTCGCCTTTCGGTTTTGGGTCCTGGAAAATAAAAAATAAGAAGGTTGTATTTTTTAAATTTCAAAGAAATCTCACTCCGAATGATAACTGGTCCTTGAGAAGATGTTTCACCAGAATCACTATCGTCGTCTTCTTCGTCATCTTCTCCATCTACTGTCTCTTGTATCACTACTTTCTTCGGATAACTTTTTGATGCTGAGCTTCCCGTCTTTTTATGTTTCAATTTCTCTACTTCACTCGGGGACATATTGACTAACATCCTTAATAATTCTTCTTTCATATTCTTGGGACTAGTTGGGTTTTCTGGCGGATCTGAGAACTTCATTGGTTTTTGTTCTTTGATTTTTTCTTCAATGGGCGGAGACTCTATGGCTTCTGGATGTTCATGAATAGTTGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATATCGAAAATCAGAACAGC</pcr_primer_p1>
		<pcr_primer_p2>AAGAAGTATAGGTGCTCAATCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATATCGAAAATCAGAACAGCGTTTCATGCTCTGATTCGATTAGATAGACCCACCGGTAACCCGTTCATCTGAAGTGTCTTTCGCATTTGTTCAACTTGATATCTCAATTGTTGATTCTCTTGTTCAATGTCATCAATGTGTTCGATAGCTTTTCGAAGTGTCGCAGATTTCGATAGCTTTGCATCTTCTCCGCACAACAAAACTTTTAATTGTTGAATTCTATCATTGATTGAGCACCTATACTTCTT</canonical_amplicon>
		<polymorphic_amplicon>AAATATCGAAAATCAGAACAGCGTTTCATGCTCTGATTCGATTAGATAGACCCACCGGTAACCCGTTCATCTGAAGTGTCTTTCGCATTTGTTCAACTTGATATCTCAATTGTTGATTCTCTTGTTCAATGTCATCAATGTGTTCGATAGCTTTTCGAAGTGTCGCASATTTCGATAGCTTTGCATCTTCTCCGCACAACAAAACTTTTAATTGTTGAATTCTATCATTGATTGAGCACCTATACTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32910</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>185578</contig_pos>
        <strand></strand>
        <context>TTTCAATTTT[G/T]AAATTTTGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTTTTTTAAATTAAGGTCAGCATTTAAATTTTTTGAAATTTCAATTTT</left_flank>
        <right_flank>AAATTTTGTTTTGTAGTTTTAATGAATTTTTGCCAAAATCCGTCAAACAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGTTCCAGTTAATGGAGATAAAGGAGATGTTCGTAAAGGATTCAGCATACTTGCAGGACCCTCTCCAGATAATTGTTGAGTTGATGCTAGAGATGGACCTCGCCCTCCACCAAGATCGAAGACAGGAGGAGAGAATCGCATTCCGAAAAAGTCTTCGTGATTGTTTTTTAGAAGAGACTGTATTCGGCTCACGTCGTGTTGGCTGCAAAATTAGTATATCATTTTCAGTATCCTCATTCAGGATTCTACTGTTTCAAAAAGTCCAAACAATAATGTCAATTTTAAAAAAAACTAAAATTAATTATTTTAATTAGGCCCTTTTCATGAAAGACGATGAAACAACTACCGAACAATACCGTTCAAAATGCTGTCTACTCTATGGTATTATTCGAGTGCCGGTATGGAGCCAAAATTTTTACCAGATAAAGGCGTTGTTCGAAAGTTAGGTTTTTTTTTAAATTAAGGTCAGCATTTAAATTTTTTGAAATTTCAATTTTGAAATTTTGTTTTGTAGTTTTAATGAATTTTTGCCAAAATCCGTCAAACATTTCCAGATTCCAGATCTGGCAAAAATTATTGCCGGCACTTGAAAAATAGTTATGCTCAAAAACCCACAGAGAACCGGAGAGGGACAATCTTATGAACTGTCCCAACCCATCAACTTTGAGTTCAACTCTTTCGATCCCTTTAAGAGATATCAAACATTTGTCAACTGATAAAATATTGGTGATATTATGATGAATAATTTATCAATTGACGAAATTTTGATAATTTTCACAGGAATCGAGATAATTGAGCTCAAGTTAGAAGGTTTGGGTGATAATAACAGAAATACGGTATGAAGCTTTATGGTTTCAGAATGACTATAAGAAATTTATCAAAAATTATTTAAAGTGTCAGAATTTATGTTATTTCTCAAAAAATTTGTCATAAGAAAAAAACGCAGGACTCTAAAAATATATGTTTTTTTTCAAAAACTCACCCATCAATTTCATAAT</canonical>
            <polymorphic>TATGTTCCAGTTAATGGAGATAAAGGAGATGTTCGTAAAGGATTCAGCATACTTGCAGGACCCTCTCCAGATAATTGTTGAGTTGATGCTAGAGATGGACCTCGCCCTCCACCAAGATCGAAGACAGGAGGAGAGAATCGCATTCCGAAAAAGTCTTCGTGATTGTTTTTTAGAAGAGACTGTATTCGGCTCACGTCGTGTTGGCTGCAAAATTAGTATATCATTTTCAGTATCCTCATTCAGGATTCTACTGTTTCAAAAAGTCCAAACAATAATGTCAATTTTAAAAAAAACTAAAATTAATTATTTTAATTAGGCCCTTTTCATGAAAGACGATGAAACAACTACCGAACAATACCGTTCAAAATGCTGTCTACTCTATGGTATTATTCGAGTGCCGGTATGGAGCCAAAATTTTTACCAGATAAAGGCGTTGTTCGAAAGTTAGGTTTTTTTTTAAATTAAGGTCAGCATTTAAATTTTTTGAAATTTCAATTTTKAAATTTTGTTTTGTAGTTTTAATGAATTTTTGCCAAAATCCGTCAAACATTTCCAGATTCCAGATCTGGCAAAAATTATTGCCGGCACTTGAAAAATAGTTATGCTCAAAAACCCACAGAGAACCGGAGAGGGACAATCTTATGAACTGTCCCAACCCATCAACTTTGAGTTCAACTCTTTCGATCCCTTTAAGAGATATCAAACATTTGTCAACTGATAAAATATTGGTGATATTATGATGAATAATTTATCAATTGACGAAATTTTGATAATTTTCACAGGAATCGAGATAATTGAGCTCAAGTTAGAAGGTTTGGGTGATAATAACAGAAATACGGTATGAAGCTTTATGGTTTCAGAATGACTATAAGAAATTTATCAAAAATTATTTAAAGTGTCAGAATTTATGTTATTTCTCAAAAAATTTGTCATAAGAAAAAAACGCAGGACTCTAAAAATATATGTTTTTTTTCAAAAACTCACCCATCAATTTCATAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGTTCGAAAGTTAGGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTTGGGACAGTTCATAAGATTG</pcr_primer_p2>
		<pcr_amplicon_size>224</pcr_amplicon_size>
		<canonical_amplicon>GTTGTTCGAAAGTTAGGTTTTTTTTTAAATTAAGGTCAGCATTTAAATTTTTTGAAATTTCAATTTTGAAATTTTGTTTTGTAGTTTTAATGAATTTTTGCCAAAATCCGTCAAACATTTCCAGATTCCAGATCTGGCAAAAATTATTGCCGGCACTTGAAAAATAGTTATGCTCAAAAACCCACAGAGAACCGGAGAGGGACAATCTTATGAACTGTCCCAAC</canonical_amplicon>
		<polymorphic_amplicon>GTTGTTCGAAAGTTAGGTTTTTTTTTAAATTAAGGTCAGCATTTAAATTTTTTGAAATTTCAATTTTKAAATTTTGTTTTGTAGTTTTAATGAATTTTTGCCAAAATCCGTCAAACATTTCCAGATTCCAGATCTGGCAAAAATTATTGCCGGCACTTGAAAAATAGTTATGCTCAAAAACCCACAGAGAACCGGAGAGGGACAATCTTATGAACTGTCCCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32911</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>236016</contig_pos>
        <strand></strand>
        <context>aaaacttttg[C/T]tttttttgat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATATTGTTGAATTTAAAAAAAGTGACACCTAAGAATTTGAAAACTTTTG</left_flank>
        <right_flank>TTTTTTTGATCTACGAATAAGTGCGGCAAAAACGTAATATTTCAGAATTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTCGGTTTTCGAAAATTGCTTCAAAGTCGATCTCCTCTTTCATTTTTTGTCGGAACTAGCTGCTTTTGCACTTAAAATGCGTGTTTTAGCCTGTTTAATTTCTATGAACGAAAAATTGAAACAATTGTCGAAAAATGAGAAAATTTCGCTAAAAACCGGCTTTTCAGTGTAAAATTTTTTTTAAAAAAATTGTCGCCGCGCGCAACCGCGCTCCGCTGAGAAAAAGGCTTGCAGTTCATTTTGGGAGCTGGGGAGACCGTGACAGGGAATATTATGGTGAAAGTATTTATGAAAGTATTTACTATAGGAAATCATTGAGAATTTAGTGAAGGAAGCGCGCTCGGCTGACATGCTTTATAGACACAGAGACGCAGAAAAAGGGACTGGAGGAATGGGAGTTATGGACATTCAGAAGAAAATAATTGGACCACTAGGAAGAAAGGATTCATATTGTTGAATTTAAAAAAAGTGACACCTAAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAATAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTCGAGCTACTTTCACGTTTAAGTTTAGTTTTTTGCGGAAAAATAGATTCTAGAGCTGCTGGCGGTATTTTTATATCAAGAAATCAAAATTTTGTTCAGAAAATCCCACTGAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGAACCGTCTCCGAGATTTTCAGGTGTCACTTTTTTAAATCCGACAATAGGAAAAAATAAAAATGAAGAGAATAATATAGGTTTAAGAGTAGCTATGAATCTCAAGACTATCTATGAGTGAACCTTCTCCAAAATATTTCAGAAACTAGGTGACACGGAAACGTGAAAAATCGTTGGATGTCTGGGAACTTTTTTCTAAGTCGACAGTAGTTGGAAAGTTGAAAAACTATTTATTTTTCAACTTCGAGATGAGCAGTGATGAGCT</canonical>
            <polymorphic>ATTTTCGGTTTTCGAAAATTGCTTCAAAGTCGATCTCCTCTTTCATTTTTTGTCGGAACTAGCTGCTTTTGCACTTAAAATGCGTGTTTTAGCCTGTTTAATTTCTATGAACGAAAAATTGAAACAATTGTCGAAAAATGAGAAAATTTCGCTAAAAACCGGCTTTTCAGTGTAAAATTTTTTTTAAAAAAATTGTCGCCGCGCGCAACCGCGCTCCGCTGAGAAAAAGGCTTGCAGTTCATTTTGGGAGCTGGGGAGACCGTGACAGGGAATATTATGGTGAAAGTATTTATGAAAGTATTTACTATAGGAAATCATTGAGAATTTAGTGAAGGAAGCGCGCTCGGCTGACATGCTTTATAGACACAGAGACGCAGAAAAAGGGACTGGAGGAATGGGAGTTATGGACATTCAGAAGAAAATAATTGGACCACTAGGAAGAAAGGATTCATATTGTTGAATTTAAAAAAAGTGACACCTAAGAATTTGAAAACTTTTGYTTTTTTTGATCTACGAATAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTCGAGCTACTTTCACGTTTAAGTTTAGTTTTTTGCGGAAAAATAGATTCTAGAGCTGCTGGCGGTATTTTTATATCAAGAAATCAAAATTTTGTTCAGAAAATCCCACTGAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGAACCGTCTCCGAGATTTTCAGGTGTCACTTTTTTAAATCCGACAATAGGAAAAAATAAAAATGAAGAGAATAATATAGGTTTAAGAGTAGCTATGAATCTCAAGACTATCTATGAGTGAACCTTCTCCAAAATATTTCAGAAACTAGGTGACACGGAAACGTGAAAAATCGTTGGATGTCTGGGAACTTTTTTCTAAGTCGACAGTAGTTGGAAAGTTGAAAAACTATTTATTTTTCAACTTCGAGATGAGCAGTGATGAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATAATTGGACCACTAGGA</pcr_primer_p1>
		<pcr_primer_p2>TCTTGAGATTCATAGCTACTCTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>GAAAATAATTGGACCACTAGGAAGAAAGGATTCATATTGTTGAATTTAAAAAAAGTGACACCTAAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAATAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTCGAGCTACTTTCACGTTTAAGTTTAGTTTTTTGCGGAAAAATAGATTCTAGAGCTGCTGGCGGTATTTTTATATCAAGAAATCAAAATTTTGTTCAGAAAATCCCACTGAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGAACCGTCTCCGAGATTTTCAGGTGTCACTTTTTTAAATCCGACAATAGGAAAAAATAAAAATGAAGAGAATAATATAGGTTTAAGAGTAGCTATGAATCTCAAGA</canonical_amplicon>
		<polymorphic_amplicon>GAAAATAATTGGACCACTAGGAAGAAAGGATTCATATTGTTGAATTTAAAAAAAGTGACACCTAAGAATTTGAAAACTTTTGYTTTTTTTGATCTACGAATAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTCGAGCTACTTTCACGTTTAAGTTTAGTTTTTTGCGGAAAAATAGATTCTAGAGCTGCTGGCGGTATTTTTATATCAAGAAATCAAAATTTTGTTCAGAAAATCCCACTGAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGAACCGTCTCCGAGATTTTCAGGTGTCACTTTTTTAAATCCGACAATAGGAAAAAATAAAAATGAAGAGAATAATATAGGTTTAAGAGTAGCTATGAATCTCAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32912</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>236088</contig_pos>
        <strand></strand>
        <context>agctactttc[A/G]cgtttaagtt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTCGAGCTACTTTC</left_flank>
        <right_flank>CGTTTAAGTTTAGTTTTTTGCGGAAAAATAGATTCTAGAGCTGCTGGCGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTAAAATGCGTGTTTTAGCCTGTTTAATTTCTATGAACGAAAAATTGAAACAATTGTCGAAAAATGAGAAAATTTCGCTAAAAACCGGCTTTTCAGTGTAAAATTTTTTTTAAAAAAATTGTCGCCGCGCGCAACCGCGCTCCGCTGAGAAAAAGGCTTGCAGTTCATTTTGGGAGCTGGGGAGACCGTGACAGGGAATATTATGGTGAAAGTATTTATGAAAGTATTTACTATAGGAAATCATTGAGAATTTAGTGAAGGAAGCGCGCTCGGCTGACATGCTTTATAGACACAGAGACGCAGAAAAAGGGACTGGAGGAATGGGAGTTATGGACATTCAGAAGAAAATAATTGGACCACTAGGAAGAAAGGATTCATATTGTTGAATTTAAAAAAAGTGACACCTAAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAATAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTCGAGCTACTTTCACGTTTAAGTTTAGTTTTTTGCGGAAAAATAGATTCTAGAGCTGCTGGCGGTATTTTTATATCAAGAAATCAAAATTTTGTTCAGAAAATCCCACTGAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGAACCGTCTCCGAGATTTTCAGGTGTCACTTTTTTAAATCCGACAATAGGAAAAAATAAAAATGAAGAGAATAATATAGGTTTAAGAGTAGCTATGAATCTCAAGACTATCTATGAGTGAACCTTCTCCAAAATATTTCAGAAACTAGGTGACACGGAAACGTGAAAAATCGTTGGATGTCTGGGAACTTTTTTCTAAGTCGACAGTAGTTGGAAAGTTGAAAAACTATTTATTTTTCAACTTCGAGATGAGCAGTGATGAGCTACGCGATTCTCGTGGAATGCCACAAGTGAGGACTGCTGATCTCGTTTCTCATGAAACCTTAAATTCAGCCTG</canonical>
            <polymorphic>ACTTAAAATGCGTGTTTTAGCCTGTTTAATTTCTATGAACGAAAAATTGAAACAATTGTCGAAAAATGAGAAAATTTCGCTAAAAACCGGCTTTTCAGTGTAAAATTTTTTTTAAAAAAATTGTCGCCGCGCGCAACCGCGCTCCGCTGAGAAAAAGGCTTGCAGTTCATTTTGGGAGCTGGGGAGACCGTGACAGGGAATATTATGGTGAAAGTATTTATGAAAGTATTTACTATAGGAAATCATTGAGAATTTAGTGAAGGAAGCGCGCTCGGCTGACATGCTTTATAGACACAGAGACGCAGAAAAAGGGACTGGAGGAATGGGAGTTATGGACATTCAGAAGAAAATAATTGGACCACTAGGAAGAAAGGATTCATATTGTTGAATTTAAAAAAAGTGACACCTAAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAATAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTCGAGCTACTTTCRCGTTTAAGTTTAGTTTTTTGCGGAAAAATAGATTCTAGAGCTGCTGGCGGTATTTTTATATCAAGAAATCAAAATTTTGTTCAGAAAATCCCACTGAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGAACCGTCTCCGAGATTTTCAGGTGTCACTTTTTTAAATCCGACAATAGGAAAAAATAAAAATGAAGAGAATAATATAGGTTTAAGAGTAGCTATGAATCTCAAGACTATCTATGAGTGAACCTTCTCCAAAATATTTCAGAAACTAGGTGACACGGAAACGTGAAAAATCGTTGGATGTCTGGGAACTTTTTTCTAAGTCGACAGTAGTTGGAAAGTTGAAAAACTATTTATTTTTCAACTTCGAGATGAGCAGTGATGAGCTACGCGATTCTCGTGGAATGCCACAAGTGAGGACTGCTGATCTCGTTTCTCATGAAACCTTAAATTCAGCCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>93 93 92 91 86 67 59 49 49 46 44 41 35 32 28 21 18 14 10 9 8 6 3 3 3</canonical_bands>
                <polymorphic_bands>142 93 92 91 86 67 59 49 46 44 41 35 32 28 21 18 14 10 9 8 6 3 3 3</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>460 324 176 40</canonical_bands>
                <polymorphic_bands>460 364 176</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATAATTGGACCACTAGGA</pcr_primer_p1>
		<pcr_primer_p2>TCTTGAGATTCATAGCTACTCTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>GAAAATAATTGGACCACTAGGAAGAAAGGATTCATATTGTTGAATTTAAAAAAAGTGACACCTAAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAATAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTCGAGCTACTTTCACGTTTAAGTTTAGTTTTTTGCGGAAAAATAGATTCTAGAGCTGCTGGCGGTATTTTTATATCAAGAAATCAAAATTTTGTTCAGAAAATCCCACTGAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGAACCGTCTCCGAGATTTTCAGGTGTCACTTTTTTAAATCCGACAATAGGAAAAAATAAAAATGAAGAGAATAATATAGGTTTAAGAGTAGCTATGAATCTCAAGA</canonical_amplicon>
		<polymorphic_amplicon>GAAAATAATTGGACCACTAGGAAGAAAGGATTCATATTGTTGAATTTAAAAAAAGTGACACCTAAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAATAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTCGAGCTACTTTCRCGTTTAAGTTTAGTTTTTTGCGGAAAAATAGATTCTAGAGCTGCTGGCGGTATTTTTATATCAAGAAATCAAAATTTTGTTCAGAAAATCCCACTGAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGAACCGTCTCCGAGATTTTCAGGTGTCACTTTTTTAAATCCGACAATAGGAAAAAATAAAAATGAAGAGAATAATATAGGTTTAAGAGTAGCTATGAATCTCAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32913</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>236140</contig_pos>
        <strand></strand>
        <context>tgctggcggt[A/C]wttttwtatc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTTAAGTTTAGTTTTTTGCGGAAAAATAGATTCTAGAGCTGCTGGCGGT</left_flank>
        <right_flank>TTTTTATATCAAGAAATCAAAATTTTGTTCAGAAAATCCCACTGAATTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTGTCGAAAAATGAGAAAATTTCGCTAAAAACCGGCTTTTCAGTGTAAAATTTTTTTTAAAAAAATTGTCGCCGCGCGCAACCGCGCTCCGCTGAGAAAAAGGCTTGCAGTTCATTTTGGGAGCTGGGGAGACCGTGACAGGGAATATTATGGTGAAAGTATTTATGAAAGTATTTACTATAGGAAATCATTGAGAATTTAGTGAAGGAAGCGCGCTCGGCTGACATGCTTTATAGACACAGAGACGCAGAAAAAGGGACTGGAGGAATGGGAGTTATGGACATTCAGAAGAAAATAATTGGACCACTAGGAAGAAAGGATTCATATTGTTGAATTTAAAAAAAGTGACACCTAAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAATAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTCGAGCTACTTTCACGTTTAAGTTTAGTTTTTTGCGGAAAAATAGATTCTAGAGCTGCTGGCGGTATTTTTATATCAAGAAATCAAAATTTTGTTCAGAAAATCCCACTGAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGAACCGTCTCCGAGATTTTCAGGTGTCACTTTTTTAAATCCGACAATAGGAAAAAATAAAAATGAAGAGAATAATATAGGTTTAAGAGTAGCTATGAATCTCAAGACTATCTATGAGTGAACCTTCTCCAAAATATTTCAGAAACTAGGTGACACGGAAACGTGAAAAATCGTTGGATGTCTGGGAACTTTTTTCTAAGTCGACAGTAGTTGGAAAGTTGAAAAACTATTTATTTTTCAACTTCGAGATGAGCAGTGATGAGCTACGCGATTCTCGTGGAATGCCACAAGTGAGGACTGCTGATCTCGTTTCTCATGAAACCTTAAATTCAGCCTGGATTCATTATCGAACATCAGAGCAGTGACCATAAGTGGAAAGTATTGCGTAA</canonical>
            <polymorphic>CAATTGTCGAAAAATGAGAAAATTTCGCTAAAAACCGGCTTTTCAGTGTAAAATTTTTTTTAAAAAAATTGTCGCCGCGCGCAACCGCGCTCCGCTGAGAAAAAGGCTTGCAGTTCATTTTGGGAGCTGGGGAGACCGTGACAGGGAATATTATGGTGAAAGTATTTATGAAAGTATTTACTATAGGAAATCATTGAGAATTTAGTGAAGGAAGCGCGCTCGGCTGACATGCTTTATAGACACAGAGACGCAGAAAAAGGGACTGGAGGAATGGGAGTTATGGACATTCAGAAGAAAATAATTGGACCACTAGGAAGAAAGGATTCATATTGTTGAATTTAAAAAAAGTGACACCTAAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAATAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTCGAGCTACTTTCACGTTTAAGTTTAGTTTTTTGCGGAAAAATAGATTCTAGAGCTGCTGGCGGTMTTTTTATATCAAGAAATCAAAATTTTGTTCAGAAAATCCCACTGAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGAACCGTCTCCGAGATTTTCAGGTGTCACTTTTTTAAATCCGACAATAGGAAAAAATAAAAATGAAGAGAATAATATAGGTTTAAGAGTAGCTATGAATCTCAAGACTATCTATGAGTGAACCTTCTCCAAAATATTTCAGAAACTAGGTGACACGGAAACGTGAAAAATCGTTGGATGTCTGGGAACTTTTTTCTAAGTCGACAGTAGTTGGAAAGTTGAAAAACTATTTATTTTTCAACTTCGAGATGAGCAGTGATGAGCTACGCGATTCTCGTGGAATGCCACAAGTGAGGACTGCTGATCTCGTTTCTCATGAAACCTTAAATTCAGCCTGGATTCATTATCGAACATCAGAGCAGTGACCATAAGTGGAAAGTATTGCGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATAATTGGACCACTAGGA</pcr_primer_p1>
		<pcr_primer_p2>TCTTGAGATTCATAGCTACTCTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>GAAAATAATTGGACCACTAGGAAGAAAGGATTCATATTGTTGAATTTAAAAAAAGTGACACCTAAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAATAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTCGAGCTACTTTCACGTTTAAGTTTAGTTTTTTGCGGAAAAATAGATTCTAGAGCTGCTGGCGGTATTTTTATATCAAGAAATCAAAATTTTGTTCAGAAAATCCCACTGAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGAACCGTCTCCGAGATTTTCAGGTGTCACTTTTTTAAATCCGACAATAGGAAAAAATAAAAATGAAGAGAATAATATAGGTTTAAGAGTAGCTATGAATCTCAAGA</canonical_amplicon>
		<polymorphic_amplicon>GAAAATAATTGGACCACTAGGAAGAAAGGATTCATATTGTTGAATTTAAAAAAAGTGACACCTAAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAATAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTCGAGCTACTTTCACGTTTAAGTTTAGTTTTTTGCGGAAAAATAGATTCTAGAGCTGCTGGCGGTMTTTTTATATCAAGAAATCAAAATTTTGTTCAGAAAATCCCACTGAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGAACCGTCTCCGAGATTTTCAGGTGTCACTTTTTTAAATCCGACAATAGGAAAAAATAAAAATGAAGAGAATAATATAGGTTTAAGAGTAGCTATGAATCTCAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32914</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>236141</contig_pos>
        <strand></strand>
        <context>gctggcggtm[T/A]ttttwtatca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTAAGTTTAGTTTTTTGCGGAAAAATAGATTCTAGAGCTGCTGGCGGTA</left_flank>
        <right_flank>TTTTATATCAAGAAATCAAAATTTTGTTCAGAAAATCCCACTGAATTCAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGTCGAAAAATGAGAAAATTTCGCTAAAAACCGGCTTTTCAGTGTAAAATTTTTTTTAAAAAAATTGTCGCCGCGCGCAACCGCGCTCCGCTGAGAAAAAGGCTTGCAGTTCATTTTGGGAGCTGGGGAGACCGTGACAGGGAATATTATGGTGAAAGTATTTATGAAAGTATTTACTATAGGAAATCATTGAGAATTTAGTGAAGGAAGCGCGCTCGGCTGACATGCTTTATAGACACAGAGACGCAGAAAAAGGGACTGGAGGAATGGGAGTTATGGACATTCAGAAGAAAATAATTGGACCACTAGGAAGAAAGGATTCATATTGTTGAATTTAAAAAAAGTGACACCTAAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAATAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTCGAGCTACTTTCACGTTTAAGTTTAGTTTTTTGCGGAAAAATAGATTCTAGAGCTGCTGGCGGTATTTTTATATCAAGAAATCAAAATTTTGTTCAGAAAATCCCACTGAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGAACCGTCTCCGAGATTTTCAGGTGTCACTTTTTTAAATCCGACAATAGGAAAAAATAAAAATGAAGAGAATAATATAGGTTTAAGAGTAGCTATGAATCTCAAGACTATCTATGAGTGAACCTTCTCCAAAATATTTCAGAAACTAGGTGACACGGAAACGTGAAAAATCGTTGGATGTCTGGGAACTTTTTTCTAAGTCGACAGTAGTTGGAAAGTTGAAAAACTATTTATTTTTCAACTTCGAGATGAGCAGTGATGAGCTACGCGATTCTCGTGGAATGCCACAAGTGAGGACTGCTGATCTCGTTTCTCATGAAACCTTAAATTCAGCCTGGATTCATTATCGAACATCAGAGCAGTGACCATAAGTGGAAAGTATTGCGTAAT</canonical>
            <polymorphic>AATTGTCGAAAAATGAGAAAATTTCGCTAAAAACCGGCTTTTCAGTGTAAAATTTTTTTTAAAAAAATTGTCGCCGCGCGCAACCGCGCTCCGCTGAGAAAAAGGCTTGCAGTTCATTTTGGGAGCTGGGGAGACCGTGACAGGGAATATTATGGTGAAAGTATTTATGAAAGTATTTACTATAGGAAATCATTGAGAATTTAGTGAAGGAAGCGCGCTCGGCTGACATGCTTTATAGACACAGAGACGCAGAAAAAGGGACTGGAGGAATGGGAGTTATGGACATTCAGAAGAAAATAATTGGACCACTAGGAAGAAAGGATTCATATTGTTGAATTTAAAAAAAGTGACACCTAAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAATAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTCGAGCTACTTTCACGTTTAAGTTTAGTTTTTTGCGGAAAAATAGATTCTAGAGCTGCTGGCGGTAWTTTTATATCAAGAAATCAAAATTTTGTTCAGAAAATCCCACTGAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGAACCGTCTCCGAGATTTTCAGGTGTCACTTTTTTAAATCCGACAATAGGAAAAAATAAAAATGAAGAGAATAATATAGGTTTAAGAGTAGCTATGAATCTCAAGACTATCTATGAGTGAACCTTCTCCAAAATATTTCAGAAACTAGGTGACACGGAAACGTGAAAAATCGTTGGATGTCTGGGAACTTTTTTCTAAGTCGACAGTAGTTGGAAAGTTGAAAAACTATTTATTTTTCAACTTCGAGATGAGCAGTGATGAGCTACGCGATTCTCGTGGAATGCCACAAGTGAGGACTGCTGATCTCGTTTCTCATGAAACCTTAAATTCAGCCTGGATTCATTATCGAACATCAGAGCAGTGACCATAAGTGGAAAGTATTGCGTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATAATTGGACCACTAGGA</pcr_primer_p1>
		<pcr_primer_p2>TCTTGAGATTCATAGCTACTCTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>GAAAATAATTGGACCACTAGGAAGAAAGGATTCATATTGTTGAATTTAAAAAAAGTGACACCTAAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAATAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTCGAGCTACTTTCACGTTTAAGTTTAGTTTTTTGCGGAAAAATAGATTCTAGAGCTGCTGGCGGTATTTTTATATCAAGAAATCAAAATTTTGTTCAGAAAATCCCACTGAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGAACCGTCTCCGAGATTTTCAGGTGTCACTTTTTTAAATCCGACAATAGGAAAAAATAAAAATGAAGAGAATAATATAGGTTTAAGAGTAGCTATGAATCTCAAGA</canonical_amplicon>
		<polymorphic_amplicon>GAAAATAATTGGACCACTAGGAAGAAAGGATTCATATTGTTGAATTTAAAAAAAGTGACACCTAAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAATAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTCGAGCTACTTTCACGTTTAAGTTTAGTTTTTTGCGGAAAAATAGATTCTAGAGCTGCTGGCGGTAWTTTTATATCAAGAAATCAAAATTTTGTTCAGAAAATCCCACTGAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGAACCGTCTCCGAGATTTTCAGGTGTCACTTTTTTAAATCCGACAATAGGAAAAAATAAAAATGAAGAGAATAATATAGGTTTAAGAGTAGCTATGAATCTCAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32915</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>236146</contig_pos>
        <strand></strand>
        <context>cggtmwtttt[A/T]tatcaagaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTTAGTTTTTTGCGGAAAAATAGATTCTAGAGCTGCTGGCGGTATTTTT</left_flank>
        <right_flank>TATCAAGAAATCAAAATTTTGTTCAGAAAATCCCACTGAATTCACATAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGAAAAATGAGAAAATTTCGCTAAAAACCGGCTTTTCAGTGTAAAATTTTTTTTAAAAAAATTGTCGCCGCGCGCAACCGCGCTCCGCTGAGAAAAAGGCTTGCAGTTCATTTTGGGAGCTGGGGAGACCGTGACAGGGAATATTATGGTGAAAGTATTTATGAAAGTATTTACTATAGGAAATCATTGAGAATTTAGTGAAGGAAGCGCGCTCGGCTGACATGCTTTATAGACACAGAGACGCAGAAAAAGGGACTGGAGGAATGGGAGTTATGGACATTCAGAAGAAAATAATTGGACCACTAGGAAGAAAGGATTCATATTGTTGAATTTAAAAAAAGTGACACCTAAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAATAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTCGAGCTACTTTCACGTTTAAGTTTAGTTTTTTGCGGAAAAATAGATTCTAGAGCTGCTGGCGGTATTTTTATATCAAGAAATCAAAATTTTGTTCAGAAAATCCCACTGAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGAACCGTCTCCGAGATTTTCAGGTGTCACTTTTTTAAATCCGACAATAGGAAAAAATAAAAATGAAGAGAATAATATAGGTTTAAGAGTAGCTATGAATCTCAAGACTATCTATGAGTGAACCTTCTCCAAAATATTTCAGAAACTAGGTGACACGGAAACGTGAAAAATCGTTGGATGTCTGGGAACTTTTTTCTAAGTCGACAGTAGTTGGAAAGTTGAAAAACTATTTATTTTTCAACTTCGAGATGAGCAGTGATGAGCTACGCGATTCTCGTGGAATGCCACAAGTGAGGACTGCTGATCTCGTTTCTCATGAAACCTTAAATTCAGCCTGGATTCATTATCGAACATCAGAGCAGTGACCATAAGTGGAAAGTATTGCGTAATATCTA</canonical>
            <polymorphic>TCGAAAAATGAGAAAATTTCGCTAAAAACCGGCTTTTCAGTGTAAAATTTTTTTTAAAAAAATTGTCGCCGCGCGCAACCGCGCTCCGCTGAGAAAAAGGCTTGCAGTTCATTTTGGGAGCTGGGGAGACCGTGACAGGGAATATTATGGTGAAAGTATTTATGAAAGTATTTACTATAGGAAATCATTGAGAATTTAGTGAAGGAAGCGCGCTCGGCTGACATGCTTTATAGACACAGAGACGCAGAAAAAGGGACTGGAGGAATGGGAGTTATGGACATTCAGAAGAAAATAATTGGACCACTAGGAAGAAAGGATTCATATTGTTGAATTTAAAAAAAGTGACACCTAAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAATAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTCGAGCTACTTTCACGTTTAAGTTTAGTTTTTTGCGGAAAAATAGATTCTAGAGCTGCTGGCGGTATTTTTWTATCAAGAAATCAAAATTTTGTTCAGAAAATCCCACTGAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGAACCGTCTCCGAGATTTTCAGGTGTCACTTTTTTAAATCCGACAATAGGAAAAAATAAAAATGAAGAGAATAATATAGGTTTAAGAGTAGCTATGAATCTCAAGACTATCTATGAGTGAACCTTCTCCAAAATATTTCAGAAACTAGGTGACACGGAAACGTGAAAAATCGTTGGATGTCTGGGAACTTTTTTCTAAGTCGACAGTAGTTGGAAAGTTGAAAAACTATTTATTTTTCAACTTCGAGATGAGCAGTGATGAGCTACGCGATTCTCGTGGAATGCCACAAGTGAGGACTGCTGATCTCGTTTCTCATGAAACCTTAAATTCAGCCTGGATTCATTATCGAACATCAGAGCAGTGACCATAAGTGGAAAGTATTGCGTAATATCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATAATTGGACCACTAGGA</pcr_primer_p1>
		<pcr_primer_p2>TCTTGAGATTCATAGCTACTCTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>GAAAATAATTGGACCACTAGGAAGAAAGGATTCATATTGTTGAATTTAAAAAAAGTGACACCTAAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAATAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTCGAGCTACTTTCACGTTTAAGTTTAGTTTTTTGCGGAAAAATAGATTCTAGAGCTGCTGGCGGTATTTTTATATCAAGAAATCAAAATTTTGTTCAGAAAATCCCACTGAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGAACCGTCTCCGAGATTTTCAGGTGTCACTTTTTTAAATCCGACAATAGGAAAAAATAAAAATGAAGAGAATAATATAGGTTTAAGAGTAGCTATGAATCTCAAGA</canonical_amplicon>
		<polymorphic_amplicon>GAAAATAATTGGACCACTAGGAAGAAAGGATTCATATTGTTGAATTTAAAAAAAGTGACACCTAAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAATAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTCGAGCTACTTTCACGTTTAAGTTTAGTTTTTTGCGGAAAAATAGATTCTAGAGCTGCTGGCGGTATTTTTWTATCAAGAAATCAAAATTTTGTTCAGAAAATCCCACTGAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGAACCGTCTCCGAGATTTTCAGGTGTCACTTTTTTAAATCCGACAATAGGAAAAAATAAAAATGAAGAGAATAATATAGGTTTAAGAGTAGCTATGAATCTCAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32916</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>238265</contig_pos>
        <strand></strand>
        <context>AACTGACAAA[A/T]CTTAAGCTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTATAAACAAAAATAGAGGTGATACAACATTTTTTAAAAACTGACAAA</left_flank>
        <right_flank>CTTAAGCTCCCAAAAAGCAAAATTTAACTTTTCTAACATTTTGCTCGTTC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTTTTGATTTTACCCATTTACAGGGCGAAGGATCTTTCTAAATCACACAGCGGAGAGAAGTGTGACTCTAGTGAGTATTATTTCGAAAAATATAATCATTATTTTTTCTTTACAGACGAAACCAAAAGCACAAATTCAGGAGCAAGGAAGAAACAGAAAAATTAGTTGATCTTTTCATCAAAGAGATTGAATAAACGAGTTATAATTAGTTTTAATATGAAGCAGAATAAAGAGAAATTTGACAAAATTGAAGAACACATGAAAAATTTCAAAAACAATTGAAAAAAAATTGAGGCTCAATAATTGAAACACGCCCGTTCGTGTCGAGACCCACTATTAGTCACAACACTGCGCCTCTAAACTAACTACGGTAGCTTGGGAAAATTTTCCGATAATTATCATCTCTTCCTCGCGCCATTTGTCGTCATTTTGATAAAATATTCAAGATTTTATAAACAAAAATAGAGGTGATACAACATTTTTTAAAAACTGACAAAACTTAAGCTCCCAAAAAGCAAAATTTAACTTTTCTAACATTTTGCTCGTTCGTGTCGAAGCCAACTATTGAGCATAACTTTTGCGCCTTTAAACTGACTACGGTAGCTCTGGAAACATTTTCCGATACTTTTTCCCTTCTTTTCTTCGAGTCTTTTTTTGAAATATTTTCGAATCTCCATAAGATATTCAAGATGTCATACGAAAGGCCAGCGTCGTTCAAAATAAGCTTATCGAAAACGATGGAAGTTTTGAGTATCTCTGATGATGTATGTCATCTTCATCAGCTTTTTTTCCATAATATCCTCATTGCAGAAACTCAAGAACAAACGCCGCACTCTTTTGGAAAACGAGAAGTTCAAACTGAAAGTTCTGTTCAATGAAACCCCTGGACACACTAAAAGTAAGTACTTTCCTTTACTTTTTGTTTTTGAATCATTTCGTTTTAGTTCTTTATACCGTCGCTAACGGACGTAATATAGAGGCAACACTCGAAAAGCTCA</canonical>
            <polymorphic>TAGTTTTGATTTTACCCATTTACAGGGCGAAGGATCTTTCTAAATCACACAGCGGAGAGAAGTGTGACTCTAGTGAGTATTATTTCGAAAAATATAATCATTATTTTTTCTTTACAGACGAAACCAAAAGCACAAATTCAGGAGCAAGGAAGAAACAGAAAAATTAGTTGATCTTTTCATCAAAGAGATTGAATAAACGAGTTATAATTAGTTTTAATATGAAGCAGAATAAAGAGAAATTTGACAAAATTGAAGAACACATGAAAAATTTCAAAAACAATTGAAAAAAAATTGAGGCTCAATAATTGAAACACGCCCGTTCGTGTCGAGACCCACTATTAGTCACAACACTGCGCCTCTAAACTAACTACGGTAGCTTGGGAAAATTTTCCGATAATTATCATCTCTTCCTCGCGCCATTTGTCGTCATTTTGATAAAATATTCAAGATTTTATAAACAAAAATAGAGGTGATACAACATTTTTTAAAAACTGACAAAWCTTAAGCTCCCAAAAAGCAAAATTTAACTTTTCTAACATTTTGCTCGTTCGTGTCGAAGCCAACTATTGAGCATAACTTTTGCGCCTTTAAACTGACTACGGTAGCTCTGGAAACATTTTCCGATACTTTTTCCCTTCTTTTCTTCGAGTCTTTTTTTGAAATATTTTCGAATCTCCATAAGATATTCAAGATGTCATACGAAAGGCCAGCGTCGTTCAAAATAAGCTTATCGAAAACGATGGAAGTTTTGAGTATCTCTGATGATGTATGTCATCTTCATCAGCTTTTTTTCCATAATATCCTCATTGCAGAAACTCAAGAACAAACGCCGCACTCTTTTGGAAAACGAGAAGTTCAAACTGAAAGTTCTGTTCAATGAAACCCCTGGACACACTAAAAGTAAGTACTTTCCTTTACTTTTTGTTTTTGAATCATTTCGTTTTAGTTCTTTATACCGTCGCTAACGGACGTAATATAGAGGCAACACTCGAAAAGCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGACCCACTATTAGTCACAACA</pcr_primer_p1>
		<pcr_primer_p2>TCAATAGTTGGCTTCGACAC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GAGACCCACTATTAGTCACAACACTGCGCCTCTAAACTAACTACGGTAGCTTGGGAAAATTTTCCGATAATTATCATCTCTTCCTCGCGCCATTTGTCGTCATTTTGATAAAATATTCAAGATTTTATAAACAAAAATAGAGGTGATACAACATTTTTTAAAAACTGACAAAACTTAAGCTCCCAAAAAGCAAAATTTAACTTTTCTAACATTTTGCTCGTTCGTGTCGAAGCCAACTATTGA</canonical_amplicon>
		<polymorphic_amplicon>GAGACCCACTATTAGTCACAACACTGCGCCTCTAAACTAACTACGGTAGCTTGGGAAAATTTTCCGATAATTATCATCTCTTCCTCGCGCCATTTGTCGTCATTTTGATAAAATATTCAAGATTTTATAAACAAAAATAGAGGTGATACAACATTTTTTAAAAACTGACAAAWCTTAAGCTCCCAAAAAGCAAAATTTAACTTTTCTAACATTTTGCTCGTTCGTGTCGAAGCCAACTATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32917</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>252051</contig_pos>
        <strand>+</strand>
        <context>AAATTCAATT[C/T]TGAGAACCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAAGCGAACCACCAACGTTATCAATCATCTGATAATCACAAATTCAATT</left_flank>
        <right_flank>TGAGAACCCAATATTCAGAAGATTATCAGTATCTGTTATCAGGGACTGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACAGAGTCTTTTGATATTCTCATATCAATCCTACAAAACCAAATGAATCTTCTGAAGATGTCACCAGATGACGTGGCATCCACACCACTACCGTATCTGGGAATCGATTCATTGAGACTTGCTGAGCTGGAATATCACATTTCAAATCATCCGGAATTCACGAATTTGAATTTGAATGCTCCATTCCTAGTGTCTTACAAGACACTTGCTCAGATCACACTGTTTTTGGATAAGATGAAAGAAGATAAGAAGATAAGAACTAATCAGAATCCACCTGTCATTGTTCAGCATTCAGAATCTGTTCATAACAAATTCGAGATCCCATTATCCTCTCAACAAAAACGAATTTTGTTCGTTCGAGAGCTCGAAAAGGATTTGTTAGCATCTTCCTCAAATTTAACTTCCCAATTTGATGAATCGGTTTTACTTCACTTCTCACATCTTCCACATAAGCGAACCACCAACGTTATCAATCATCTGATAATCACAAATTCAATTCTGAGAACCCAATATTCAGAAGATTATCAGTATCTGTTATCAGGGACTGAGTGCTTTATTGCTATCCGAATGAAGGATGAAACTTTTATTCTAGATCCCATTCTACCCATTCGATGTATTCTGAAATCCAAACAAATTCTGCAAATCATCTTCAACCACATCTCAATCGATGGTCGATCCCTTCTCGTTTTCTATCGGAAATTCAAAGATATGATAATCAATTTTCCGAAGATCCAATGCGCAGCACCCGCACTGCAGCACTACGATTATTGTAGATCTGAGAAGGATGCTTCCAAAGAATCCTTGGATTACTGGACCAATTATCTAAAGCCATTTGGAACTTTGGAACTTGAGAAGATACCTCATGACTTCTCGGAGTATTCTGAAATTCTAACGGCTTCTTATCTGCATCAACCGTTTCCAAAAGGTATCCAGAAGAAGTTTGATACTTTTTGCCTACAGAAATCACTTTCTCGTTTTGAACTATTCATGGGAGTTCTC</canonical>
            <polymorphic>CACAGAGTCTTTTGATATTCTCATATCAATCCTACAAAACCAAATGAATCTTCTGAAGATGTCACCAGATGACGTGGCATCCACACCACTACCGTATCTGGGAATCGATTCATTGAGACTTGCTGAGCTGGAATATCACATTTCAAATCATCCGGAATTCACGAATTTGAATTTGAATGCTCCATTCCTAGTGTCTTACAAGACACTTGCTCAGATCACACTGTTTTTGGATAAGATGAAAGAAGATAAGAAGATAAGAACTAATCAGAATCCACCTGTCATTGTTCAGCATTCAGAATCTGTTCATAACAAATTCGAGATCCCATTATCCTCTCAACAAAAACGAATTTTGTTCGTTCGAGAGCTCGAAAAGGATTTGTTAGCATCTTCCTCAAATTTAACTTCCCAATTTGATGAATCGGTTTTACTTCACTTCTCACATCTTCCACATAAGCGAACCACCAACGTTATCAATCATCTGATAATCACAAATTCAATTYTGAGAACCCAATATTCAGAAGATTATCAGTATCTGTTATCAGGGACTGAGTGCTTTATTGCTATCCGAATGAAGGATGAAACTTTTATTCTAGATCCCATTCTACCCATTCGATGTATTCTGAAATCCAAACAAATTCTGCAAATCATCTTCAACCACATCTCAATCGATGGTCGATCCCTTCTCGTTTTCTATCGGAAATTCAAAGATATGATAATCAATTTTCCGAAGATCCAATGCGCAGCACCCGCACTGCAGCACTACGATTATTGTAGATCTGAGAAGGATGCTTCCAAAGAATCCTTGGATTACTGGACCAATTATCTAAAGCCATTTGGAACTTTGGAACTTGAGAAGATACCTCATGACTTCTCGGAGTATTCTGAAATTCTAACGGCTTCTTATCTGCATCAACCGTTTCCAAAAGGTATCCAGAAGAAGTTTGATACTTTTTGCCTACAGAAATCACTTTCTCGTTTTGAACTATTCATGGGAGTTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>290 231 223 123 87 46</canonical_bands>
                <polymorphic_bands>336 231 223 123 87</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>185 159 117 96 75 55 54 54 52 49 30 28 21 16 9</canonical_bands>
                <polymorphic_bands>185 159 117 96 75 55 54 54 52 49 37 30 28 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTGTTAGCATCTTCCTCAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGAATACATCGAATGGGTAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTTGTTAGCATCTTCCTCAAATTTAACTTCCCAATTTGATGAATCGGTTTTACTTCACTTCTCACATCTTCCACATAAGCGAACCACCAACGTTATCAATCATCTGATAATCACAAATTCAATTCTGAGAACCCAATATTCAGAAGATTATCAGTATCTGTTATCAGGGACTGAGTGCTTTATTGCTATCCGAATGAAGGATGAAACTTTTATTCTAGATCCCATTCTACCCATTCGATGTATTCT</canonical_amplicon>
		<polymorphic_amplicon>ATTTGTTAGCATCTTCCTCAAATTTAACTTCCCAATTTGATGAATCGGTTTTACTTCACTTCTCACATCTTCCACATAAGCGAACCACCAACGTTATCAATCATCTGATAATCACAAATTCAATTYTGAGAACCCAATATTCAGAAGATTATCAGTATCTGTTATCAGGGACTGAGTGCTTTATTGCTATCCGAATGAAGGATGAAACTTTTATTCTAGATCCCATTCTACCCATTCGATGTATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32918</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>252386</contig_pos>
        <strand>+</strand>
        <context>TAAAGCCATT[A/T]GGAACYTTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATGCTTCCAAAGAATCCTTGGATTACTGGACCAATTATCTAAAGCCATT</left_flank>
        <right_flank>GGAACTTTGGAACTTGAGAAGATACCTCATGACTTCTCGGAGTATTCTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAAAAACGAATTTTGTTCGTTCGAGAGCTCGAAAAGGATTTGTTAGCATCTTCCTCAAATTTAACTTCCCAATTTGATGAATCGGTTTTACTTCACTTCTCACATCTTCCACATAAGCGAACCACCAACGTTATCAATCATCTGATAATCACAAATTCAATTCTGAGAACCCAATATTCAGAAGATTATCAGTATCTGTTATCAGGGACTGAGTGCTTTATTGCTATCCGAATGAAGGATGAAACTTTTATTCTAGATCCCATTCTACCCATTCGATGTATTCTGAAATCCAAACAAATTCTGCAAATCATCTTCAACCACATCTCAATCGATGGTCGATCCCTTCTCGTTTTCTATCGGAAATTCAAAGATATGATAATCAATTTTCCGAAGATCCAATGCGCAGCACCCGCACTGCAGCACTACGATTATTGTAGATCTGAGAAGGATGCTTCCAAAGAATCCTTGGATTACTGGACCAATTATCTAAAGCCATTTGGAACTTTGGAACTTGAGAAGATACCTCATGACTTCTCGGAGTATTCTGAAATTCTAACGGCTTCTTATCTGCATCAACCGTTTCCAAAAGGTATCCAGAAGAAGTTTGATACTTTTTGCCTACAGAAATCACTTTCTCGTTTTGAACTATTCATGGGAGTTCTCGAAATTTCCGCTCGTCGAGTTTTTGGAATATCCGATCCCTTTGCTATGGGATTCGCAGTTGACCAAAGAACATTTCCATTCTTCGAAACGATTGGATGCTTTACAAATGTATTGTTTTATCTATCTGGAATGGATAACAACTTGGAGAATTGTCAGAAGACGTTGAGAGAATCAAGAAGGCACCAGGACTTTCCTTATGAATCGATTGTGAAGTTAACTGGAATCGATGGAGATTTATTTAACATTTTTGTGGTTAACGATGTGGTGGAAATCGATTCAATCTCGAAAAAATTCTCCAAAGCCAGTAGGAGAGTCAGATTTGAAGATGAAACAAT</canonical>
            <polymorphic>AACAAAAACGAATTTTGTTCGTTCGAGAGCTCGAAAAGGATTTGTTAGCATCTTCCTCAAATTTAACTTCCCAATTTGATGAATCGGTTTTACTTCACTTCTCACATCTTCCACATAAGCGAACCACCAACGTTATCAATCATCTGATAATCACAAATTCAATTCTGAGAACCCAATATTCAGAAGATTATCAGTATCTGTTATCAGGGACTGAGTGCTTTATTGCTATCCGAATGAAGGATGAAACTTTTATTCTAGATCCCATTCTACCCATTCGATGTATTCTGAAATCCAAACAAATTCTGCAAATCATCTTCAACCACATCTCAATCGATGGTCGATCCCTTCTCGTTTTCTATCGGAAATTCAAAGATATGATAATCAATTTTCCGAAGATCCAATGCGCAGCACCCGCACTGCAGCACTACGATTATTGTAGATCTGAGAAGGATGCTTCCAAAGAATCCTTGGATTACTGGACCAATTATCTAAAGCCATTWGGAACTTTGGAACTTGAGAAGATACCTCATGACTTCTCGGAGTATTCTGAAATTCTAACGGCTTCTTATCTGCATCAACCGTTTCCAAAAGGTATCCAGAAGAAGTTTGATACTTTTTGCCTACAGAAATCACTTTCTCGTTTTGAACTATTCATGGGAGTTCTCGAAATTTCCGCTCGTCGAGTTTTTGGAATATCCGATCCCTTTGCTATGGGATTCGCAGTTGACCAAAGAACATTTCCATTCTTCGAAACGATTGGATGCTTTACAAATGTATTGTTTTATCTATCTGGAATGGATAACAACTTGGAGAATTGTCAGAAGACGTTGAGAGAATCAAGAAGGCACCAGGACTTTCCTTATGAATCGATTGTGAAGTTAACTGGAATCGATGGAGATTTATTTAACATTTTTGTGGTTAACGATGTGGTGGAAATCGATTCAATCTCGAAAAAATTCTCCAAAGCCAGTAGGAGAGTCAGATTTGAAGATGAAACAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATCAATTTTCCGAAGATCC</pcr_primer_p1>
		<pcr_primer_p2>TCTGTAGGCAAAAAGTATCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAATCAATTTTCCGAAGATCCAATGCGCAGCACCCGCACTGCAGCACTACGATTATTGTAGATCTGAGAAGGATGCTTCCAAAGAATCCTTGGATTACTGGACCAATTATCTAAAGCCATTTGGAACTTTGGAACTTGAGAAGATACCTCATGACTTCTCGGAGTATTCTGAAATTCTAACGGCTTCTTATCTGCATCAACCGTTTCCAAAAGGTATCCAGAAGAAGTTTGATACTTTTTGCCTACAGA</canonical_amplicon>
		<polymorphic_amplicon>TAATCAATTTTCCGAAGATCCAATGCGCAGCACCCGCACTGCAGCACTACGATTATTGTAGATCTGAGAAGGATGCTTCCAAAGAATCCTTGGATTACTGGACCAATTATCTAAAGCCATTWGGAACTTTGGAACTTGAGAAGATACCTCATGACTTCTCGGAGTATTCTGAAATTCTAACGGCTTCTTATCTGCATCAACCGTTTCCAAAAGGTATCCAGAAGAAGTTTGATACTTTTTGCCTACAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32919</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>252392</contig_pos>
        <strand>+</strand>
        <context>CATTWGGAAC[C/T]TTGGAACTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCAAAGAATCCTTGGATTACTGGACCAATTATCTAAAGCCATTTGGAAC</left_flank>
        <right_flank>TTGGAACTTGAGAAGATACCTCATGACTTCTCGGAGTATTCTGAAATTCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGAATTTTGTTCGTTCGAGAGCTCGAAAAGGATTTGTTAGCATCTTCCTCAAATTTAACTTCCCAATTTGATGAATCGGTTTTACTTCACTTCTCACATCTTCCACATAAGCGAACCACCAACGTTATCAATCATCTGATAATCACAAATTCAATTCTGAGAACCCAATATTCAGAAGATTATCAGTATCTGTTATCAGGGACTGAGTGCTTTATTGCTATCCGAATGAAGGATGAAACTTTTATTCTAGATCCCATTCTACCCATTCGATGTATTCTGAAATCCAAACAAATTCTGCAAATCATCTTCAACCACATCTCAATCGATGGTCGATCCCTTCTCGTTTTCTATCGGAAATTCAAAGATATGATAATCAATTTTCCGAAGATCCAATGCGCAGCACCCGCACTGCAGCACTACGATTATTGTAGATCTGAGAAGGATGCTTCCAAAGAATCCTTGGATTACTGGACCAATTATCTAAAGCCATTTGGAACTTTGGAACTTGAGAAGATACCTCATGACTTCTCGGAGTATTCTGAAATTCTAACGGCTTCTTATCTGCATCAACCGTTTCCAAAAGGTATCCAGAAGAAGTTTGATACTTTTTGCCTACAGAAATCACTTTCTCGTTTTGAACTATTCATGGGAGTTCTCGAAATTTCCGCTCGTCGAGTTTTTGGAATATCCGATCCCTTTGCTATGGGATTCGCAGTTGACCAAAGAACATTTCCATTCTTCGAAACGATTGGATGCTTTACAAATGTATTGTTTTATCTATCTGGAATGGATAACAACTTGGAGAATTGTCAGAAGACGTTGAGAGAATCAAGAAGGCACCAGGACTTTCCTTATGAATCGATTGTGAAGTTAACTGGAATCGATGGAGATTTATTTAACATTTTTGTGGTTAACGATGTGGTGGAAATCGATTCAATCTCGAAAAAATTCTCCAAAGCCAGTAGGAGAGTCAGATTTGAAGATGAAACAATCCACGT</canonical>
            <polymorphic>AACGAATTTTGTTCGTTCGAGAGCTCGAAAAGGATTTGTTAGCATCTTCCTCAAATTTAACTTCCCAATTTGATGAATCGGTTTTACTTCACTTCTCACATCTTCCACATAAGCGAACCACCAACGTTATCAATCATCTGATAATCACAAATTCAATTCTGAGAACCCAATATTCAGAAGATTATCAGTATCTGTTATCAGGGACTGAGTGCTTTATTGCTATCCGAATGAAGGATGAAACTTTTATTCTAGATCCCATTCTACCCATTCGATGTATTCTGAAATCCAAACAAATTCTGCAAATCATCTTCAACCACATCTCAATCGATGGTCGATCCCTTCTCGTTTTCTATCGGAAATTCAAAGATATGATAATCAATTTTCCGAAGATCCAATGCGCAGCACCCGCACTGCAGCACTACGATTATTGTAGATCTGAGAAGGATGCTTCCAAAGAATCCTTGGATTACTGGACCAATTATCTAAAGCCATTTGGAACYTTGGAACTTGAGAAGATACCTCATGACTTCTCGGAGTATTCTGAAATTCTAACGGCTTCTTATCTGCATCAACCGTTTCCAAAAGGTATCCAGAAGAAGTTTGATACTTTTTGCCTACAGAAATCACTTTCTCGTTTTGAACTATTCATGGGAGTTCTCGAAATTTCCGCTCGTCGAGTTTTTGGAATATCCGATCCCTTTGCTATGGGATTCGCAGTTGACCAAAGAACATTTCCATTCTTCGAAACGATTGGATGCTTTACAAATGTATTGTTTTATCTATCTGGAATGGATAACAACTTGGAGAATTGTCAGAAGACGTTGAGAGAATCAAGAAGGCACCAGGACTTTCCTTATGAATCGATTGTGAAGTTAACTGGAATCGATGGAGATTTATTTAACATTTTTGTGGTTAACGATGTGGTGGAAATCGATTCAATCTCGAAAAAATTCTCCAAAGCCAGTAGGAGAGTCAGATTTGAAGATGAAACAATCCACGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATCAATTTTCCGAAGATCC</pcr_primer_p1>
		<pcr_primer_p2>TCTGTAGGCAAAAAGTATCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAATCAATTTTCCGAAGATCCAATGCGCAGCACCCGCACTGCAGCACTACGATTATTGTAGATCTGAGAAGGATGCTTCCAAAGAATCCTTGGATTACTGGACCAATTATCTAAAGCCATTTGGAACTTTGGAACTTGAGAAGATACCTCATGACTTCTCGGAGTATTCTGAAATTCTAACGGCTTCTTATCTGCATCAACCGTTTCCAAAAGGTATCCAGAAGAAGTTTGATACTTTTTGCCTACAGA</canonical_amplicon>
		<polymorphic_amplicon>TAATCAATTTTCCGAAGATCCAATGCGCAGCACCCGCACTGCAGCACTACGATTATTGTAGATCTGAGAAGGATGCTTCCAAAGAATCCTTGGATTACTGGACCAATTATCTAAAGCCATTTGGAACYTTGGAACTTGAGAAGATACCTCATGACTTCTCGGAGTATTCTGAAATTCTAACGGCTTCTTATCTGCATCAACCGTTTCCAAAAGGTATCCAGAAGAAGTTTGATACTTTTTGCCTACAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32920</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>252478</contig_pos>
        <strand>+</strand>
        <context>TTTCCAAAAG[A/G]TMTSCAGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTATTCTGAAATTCTAACGGCTTCTTATCTGCATCAACCGTTTCCAAAAG</left_flank>
        <right_flank>TATCCAGAAGAAGTTTGATACTTTTTGCCTACAGAAATCACTTTCTCGTT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCACTTCTCACATCTTCCACATAAGCGAACCACCAACGTTATCAATCATCTGATAATCACAAATTCAATTCTGAGAACCCAATATTCAGAAGATTATCAGTATCTGTTATCAGGGACTGAGTGCTTTATTGCTATCCGAATGAAGGATGAAACTTTTATTCTAGATCCCATTCTACCCATTCGATGTATTCTGAAATCCAAACAAATTCTGCAAATCATCTTCAACCACATCTCAATCGATGGTCGATCCCTTCTCGTTTTCTATCGGAAATTCAAAGATATGATAATCAATTTTCCGAAGATCCAATGCGCAGCACCCGCACTGCAGCACTACGATTATTGTAGATCTGAGAAGGATGCTTCCAAAGAATCCTTGGATTACTGGACCAATTATCTAAAGCCATTTGGAACTTTGGAACTTGAGAAGATACCTCATGACTTCTCGGAGTATTCTGAAATTCTAACGGCTTCTTATCTGCATCAACCGTTTCCAAAAGGTATCCAGAAGAAGTTTGATACTTTTTGCCTACAGAAATCACTTTCTCGTTTTGAACTATTCATGGGAGTTCTCGAAATTTCCGCTCGTCGAGTTTTTGGAATATCCGATCCCTTTGCTATGGGATTCGCAGTTGACCAAAGAACATTTCCATTCTTCGAAACGATTGGATGCTTTACAAATGTATTGTTTTATCTATCTGGAATGGATAACAACTTGGAGAATTGTCAGAAGACGTTGAGAGAATCAAGAAGGCACCAGGACTTTCCTTATGAATCGATTGTGAAGTTAACTGGAATCGATGGAGATTTATTTAACATTTTTGTGGTTAACGATGTGGTGGAAATCGATTCAATCTCGAAAAAATTCTCCAAAGCCAGTAGGAGAGTCAGATTTGAAGATGAAACAATCCACGTGGATATCATTCAGGATTCCACAGATTCCAAAGAGAAGAAAGTGGCAAAATATTCAATGACCTGGTATTTAAGGCTATTCGGAGATG</canonical>
            <polymorphic>CTTCACTTCTCACATCTTCCACATAAGCGAACCACCAACGTTATCAATCATCTGATAATCACAAATTCAATTCTGAGAACCCAATATTCAGAAGATTATCAGTATCTGTTATCAGGGACTGAGTGCTTTATTGCTATCCGAATGAAGGATGAAACTTTTATTCTAGATCCCATTCTACCCATTCGATGTATTCTGAAATCCAAACAAATTCTGCAAATCATCTTCAACCACATCTCAATCGATGGTCGATCCCTTCTCGTTTTCTATCGGAAATTCAAAGATATGATAATCAATTTTCCGAAGATCCAATGCGCAGCACCCGCACTGCAGCACTACGATTATTGTAGATCTGAGAAGGATGCTTCCAAAGAATCCTTGGATTACTGGACCAATTATCTAAAGCCATTTGGAACTTTGGAACTTGAGAAGATACCTCATGACTTCTCGGAGTATTCTGAAATTCTAACGGCTTCTTATCTGCATCAACCGTTTCCAAAAGRTATCCAGAAGAAGTTTGATACTTTTTGCCTACAGAAATCACTTTCTCGTTTTGAACTATTCATGGGAGTTCTCGAAATTTCCGCTCGTCGAGTTTTTGGAATATCCGATCCCTTTGCTATGGGATTCGCAGTTGACCAAAGAACATTTCCATTCTTCGAAACGATTGGATGCTTTACAAATGTATTGTTTTATCTATCTGGAATGGATAACAACTTGGAGAATTGTCAGAAGACGTTGAGAGAATCAAGAAGGCACCAGGACTTTCCTTATGAATCGATTGTGAAGTTAACTGGAATCGATGGAGATTTATTTAACATTTTTGTGGTTAACGATGTGGTGGAAATCGATTCAATCTCGAAAAAATTCTCCAAAGCCAGTAGGAGAGTCAGATTTGAAGATGAAACAATCCACGTGGATATCATTCAGGATTCCACAGATTCCAAAGAGAAGAAAGTGGCAAAATATTCAATGACCTGGTATTTAAGGCTATTCGGAGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCGGAGTATTCTGAAATTCTA</pcr_primer_p1>
		<pcr_primer_p2>ATACATTTGTAAAGCATCCAATC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TCTCGGAGTATTCTGAAATTCTAACGGCTTCTTATCTGCATCAACCGTTTCCAAAAGGTATCCAGAAGAAGTTTGATACTTTTTGCCTACAGAAATCACTTTCTCGTTTTGAACTATTCATGGGAGTTCTCGAAATTTCCGCTCGTCGAGTTTTTGGAATATCCGATCCCTTTGCTATGGGATTCGCAGTTGACCAAAGAACATTTCCATTCTTCGAAACGATTGGATGCTTTACAAATGTAT</canonical_amplicon>
		<polymorphic_amplicon>TCTCGGAGTATTCTGAAATTCTAACGGCTTCTTATCTGCATCAACCGTTTCCAAAAGRTATCCAGAAGAAGTTTGATACTTTTTGCCTACAGAAATCACTTTCTCGTTTTGAACTATTCATGGGAGTTCTCGAAATTTCCGCTCGTCGAGTTTTTGGAATATCCGATCCCTTTGCTATGGGATTCGCAGTTGACCAAAGAACATTTCCATTCTTCGAAACGATTGGATGCTTTACAAATGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32921</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>252480</contig_pos>
        <strand>+</strand>
        <context>TCCAAAAGRT[A/C]TSCAGAAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTCTGAAATTCTAACGGCTTCTTATCTGCATCAACCGTTTCCAAAAGGT</left_flank>
        <right_flank>TCCAGAAGAAGTTTGATACTTTTTGCCTACAGAAATCACTTTCTCGTTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACTTCTCACATCTTCCACATAAGCGAACCACCAACGTTATCAATCATCTGATAATCACAAATTCAATTCTGAGAACCCAATATTCAGAAGATTATCAGTATCTGTTATCAGGGACTGAGTGCTTTATTGCTATCCGAATGAAGGATGAAACTTTTATTCTAGATCCCATTCTACCCATTCGATGTATTCTGAAATCCAAACAAATTCTGCAAATCATCTTCAACCACATCTCAATCGATGGTCGATCCCTTCTCGTTTTCTATCGGAAATTCAAAGATATGATAATCAATTTTCCGAAGATCCAATGCGCAGCACCCGCACTGCAGCACTACGATTATTGTAGATCTGAGAAGGATGCTTCCAAAGAATCCTTGGATTACTGGACCAATTATCTAAAGCCATTTGGAACTTTGGAACTTGAGAAGATACCTCATGACTTCTCGGAGTATTCTGAAATTCTAACGGCTTCTTATCTGCATCAACCGTTTCCAAAAGGTATCCAGAAGAAGTTTGATACTTTTTGCCTACAGAAATCACTTTCTCGTTTTGAACTATTCATGGGAGTTCTCGAAATTTCCGCTCGTCGAGTTTTTGGAATATCCGATCCCTTTGCTATGGGATTCGCAGTTGACCAAAGAACATTTCCATTCTTCGAAACGATTGGATGCTTTACAAATGTATTGTTTTATCTATCTGGAATGGATAACAACTTGGAGAATTGTCAGAAGACGTTGAGAGAATCAAGAAGGCACCAGGACTTTCCTTATGAATCGATTGTGAAGTTAACTGGAATCGATGGAGATTTATTTAACATTTTTGTGGTTAACGATGTGGTGGAAATCGATTCAATCTCGAAAAAATTCTCCAAAGCCAGTAGGAGAGTCAGATTTGAAGATGAAACAATCCACGTGGATATCATTCAGGATTCCACAGATTCCAAAGAGAAGAAAGTGGCAAAATATTCAATGACCTGGTATTTAAGGCTATTCGGAGATGAC</canonical>
            <polymorphic>TCACTTCTCACATCTTCCACATAAGCGAACCACCAACGTTATCAATCATCTGATAATCACAAATTCAATTCTGAGAACCCAATATTCAGAAGATTATCAGTATCTGTTATCAGGGACTGAGTGCTTTATTGCTATCCGAATGAAGGATGAAACTTTTATTCTAGATCCCATTCTACCCATTCGATGTATTCTGAAATCCAAACAAATTCTGCAAATCATCTTCAACCACATCTCAATCGATGGTCGATCCCTTCTCGTTTTCTATCGGAAATTCAAAGATATGATAATCAATTTTCCGAAGATCCAATGCGCAGCACCCGCACTGCAGCACTACGATTATTGTAGATCTGAGAAGGATGCTTCCAAAGAATCCTTGGATTACTGGACCAATTATCTAAAGCCATTTGGAACTTTGGAACTTGAGAAGATACCTCATGACTTCTCGGAGTATTCTGAAATTCTAACGGCTTCTTATCTGCATCAACCGTTTCCAAAAGGTMTCCAGAAGAAGTTTGATACTTTTTGCCTACAGAAATCACTTTCTCGTTTTGAACTATTCATGGGAGTTCTCGAAATTTCCGCTCGTCGAGTTTTTGGAATATCCGATCCCTTTGCTATGGGATTCGCAGTTGACCAAAGAACATTTCCATTCTTCGAAACGATTGGATGCTTTACAAATGTATTGTTTTATCTATCTGGAATGGATAACAACTTGGAGAATTGTCAGAAGACGTTGAGAGAATCAAGAAGGCACCAGGACTTTCCTTATGAATCGATTGTGAAGTTAACTGGAATCGATGGAGATTTATTTAACATTTTTGTGGTTAACGATGTGGTGGAAATCGATTCAATCTCGAAAAAATTCTCCAAAGCCAGTAGGAGAGTCAGATTTGAAGATGAAACAATCCACGTGGATATCATTCAGGATTCCACAGATTCCAAAGAGAAGAAAGTGGCAAAATATTCAATGACCTGGTATTTAAGGCTATTCGGAGATGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCGGAGTATTCTGAAATTCTA</pcr_primer_p1>
		<pcr_primer_p2>ATACATTTGTAAAGCATCCAATC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TCTCGGAGTATTCTGAAATTCTAACGGCTTCTTATCTGCATCAACCGTTTCCAAAAGGTATCCAGAAGAAGTTTGATACTTTTTGCCTACAGAAATCACTTTCTCGTTTTGAACTATTCATGGGAGTTCTCGAAATTTCCGCTCGTCGAGTTTTTGGAATATCCGATCCCTTTGCTATGGGATTCGCAGTTGACCAAAGAACATTTCCATTCTTCGAAACGATTGGATGCTTTACAAATGTAT</canonical_amplicon>
		<polymorphic_amplicon>TCTCGGAGTATTCTGAAATTCTAACGGCTTCTTATCTGCATCAACCGTTTCCAAAAGGTMTCCAGAAGAAGTTTGATACTTTTTGCCTACAGAAATCACTTTCTCGTTTTGAACTATTCATGGGAGTTCTCGAAATTTCCGCTCGTCGAGTTTTTGGAATATCCGATCCCTTTGCTATGGGATTCGCAGTTGACCAAAGAACATTTCCATTCTTCGAAACGATTGGATGCTTTACAAATGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32922</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>252482</contig_pos>
        <strand>+</strand>
        <context>CAAAAGRTMT[C/G]CAGAAGAAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCTGAAATTCTAACGGCTTCTTATCTGCATCAACCGTTTCCAAAAGGTAT</left_flank>
        <right_flank>CAGAAGAAGTTTGATACTTTTTGCCTACAGAAATCACTTTCTCGTTTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTCTCACATCTTCCACATAAGCGAACCACCAACGTTATCAATCATCTGATAATCACAAATTCAATTCTGAGAACCCAATATTCAGAAGATTATCAGTATCTGTTATCAGGGACTGAGTGCTTTATTGCTATCCGAATGAAGGATGAAACTTTTATTCTAGATCCCATTCTACCCATTCGATGTATTCTGAAATCCAAACAAATTCTGCAAATCATCTTCAACCACATCTCAATCGATGGTCGATCCCTTCTCGTTTTCTATCGGAAATTCAAAGATATGATAATCAATTTTCCGAAGATCCAATGCGCAGCACCCGCACTGCAGCACTACGATTATTGTAGATCTGAGAAGGATGCTTCCAAAGAATCCTTGGATTACTGGACCAATTATCTAAAGCCATTTGGAACTTTGGAACTTGAGAAGATACCTCATGACTTCTCGGAGTATTCTGAAATTCTAACGGCTTCTTATCTGCATCAACCGTTTCCAAAAGGTATCCAGAAGAAGTTTGATACTTTTTGCCTACAGAAATCACTTTCTCGTTTTGAACTATTCATGGGAGTTCTCGAAATTTCCGCTCGTCGAGTTTTTGGAATATCCGATCCCTTTGCTATGGGATTCGCAGTTGACCAAAGAACATTTCCATTCTTCGAAACGATTGGATGCTTTACAAATGTATTGTTTTATCTATCTGGAATGGATAACAACTTGGAGAATTGTCAGAAGACGTTGAGAGAATCAAGAAGGCACCAGGACTTTCCTTATGAATCGATTGTGAAGTTAACTGGAATCGATGGAGATTTATTTAACATTTTTGTGGTTAACGATGTGGTGGAAATCGATTCAATCTCGAAAAAATTCTCCAAAGCCAGTAGGAGAGTCAGATTTGAAGATGAAACAATCCACGTGGATATCATTCAGGATTCCACAGATTCCAAAGAGAAGAAAGTGGCAAAATATTCAATGACCTGGTATTTAAGGCTATTCGGAGATGACCG</canonical>
            <polymorphic>ACTTCTCACATCTTCCACATAAGCGAACCACCAACGTTATCAATCATCTGATAATCACAAATTCAATTCTGAGAACCCAATATTCAGAAGATTATCAGTATCTGTTATCAGGGACTGAGTGCTTTATTGCTATCCGAATGAAGGATGAAACTTTTATTCTAGATCCCATTCTACCCATTCGATGTATTCTGAAATCCAAACAAATTCTGCAAATCATCTTCAACCACATCTCAATCGATGGTCGATCCCTTCTCGTTTTCTATCGGAAATTCAAAGATATGATAATCAATTTTCCGAAGATCCAATGCGCAGCACCCGCACTGCAGCACTACGATTATTGTAGATCTGAGAAGGATGCTTCCAAAGAATCCTTGGATTACTGGACCAATTATCTAAAGCCATTTGGAACTTTGGAACTTGAGAAGATACCTCATGACTTCTCGGAGTATTCTGAAATTCTAACGGCTTCTTATCTGCATCAACCGTTTCCAAAAGGTATSCAGAAGAAGTTTGATACTTTTTGCCTACAGAAATCACTTTCTCGTTTTGAACTATTCATGGGAGTTCTCGAAATTTCCGCTCGTCGAGTTTTTGGAATATCCGATCCCTTTGCTATGGGATTCGCAGTTGACCAAAGAACATTTCCATTCTTCGAAACGATTGGATGCTTTACAAATGTATTGTTTTATCTATCTGGAATGGATAACAACTTGGAGAATTGTCAGAAGACGTTGAGAGAATCAAGAAGGCACCAGGACTTTCCTTATGAATCGATTGTGAAGTTAACTGGAATCGATGGAGATTTATTTAACATTTTTGTGGTTAACGATGTGGTGGAAATCGATTCAATCTCGAAAAAATTCTCCAAAGCCAGTAGGAGAGTCAGATTTGAAGATGAAACAATCCACGTGGATATCATTCAGGATTCCACAGATTCCAAAGAGAAGAAAGTGGCAAAATATTCAATGACCTGGTATTTAAGGCTATTCGGAGATGACCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>273 159 127 109 79 70 68 67 48</canonical_bands>
                <polymorphic_bands>273 159 135 127 109 79 70 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCGGAGTATTCTGAAATTCTA</pcr_primer_p1>
		<pcr_primer_p2>ATACATTTGTAAAGCATCCAATC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TCTCGGAGTATTCTGAAATTCTAACGGCTTCTTATCTGCATCAACCGTTTCCAAAAGGTATCCAGAAGAAGTTTGATACTTTTTGCCTACAGAAATCACTTTCTCGTTTTGAACTATTCATGGGAGTTCTCGAAATTTCCGCTCGTCGAGTTTTTGGAATATCCGATCCCTTTGCTATGGGATTCGCAGTTGACCAAAGAACATTTCCATTCTTCGAAACGATTGGATGCTTTACAAATGTAT</canonical_amplicon>
		<polymorphic_amplicon>TCTCGGAGTATTCTGAAATTCTAACGGCTTCTTATCTGCATCAACCGTTTCCAAAAGGTATSCAGAAGAAGTTTGATACTTTTTGCCTACAGAAATCACTTTCTCGTTTTGAACTATTCATGGGAGTTCTCGAAATTTCCGCTCGTCGAGTTTTTGGAATATCCGATCCCTTTGCTATGGGATTCGCAGTTGACCAAAGAACATTTCCATTCTTCGAAACGATTGGATGCTTTACAAATGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32923</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>264821</contig_pos>
        <strand>+</strand>
        <context>AATGCATCGA[G/T]GTGGATGACG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGCAACAGTTAGCTCGCTTTTTGGCGGCTCTTGATGAGAAATGCATCGA</left_flank>
        <right_flank>GTGGATGACGTCATCAAGGAGCATGTGAAATTCGTTCGAAGAGTCTCTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACAGTAACCCAGACGGTGGAGAATAAGAAGAAACAAAAGTTGAAGTTTACTTTGGATTCTATCACTTCCGTAAGACAATATCGACAACAGGCAAAAAATTAATTTGCCTTTTTTTCAGCTTGGTTCAACCCCGAACGTCTCTTCAAAAATGCAATTTGTGCAACCTCTGTCCCCACACTACGAACCCCAGATGCCCCTAATGAAACCTATATTCGCTGCGTGTGACGATGCCTATGAATCCATTTTCCACGTCATCTGGGCTATCGATCTTGCAAGATGCTCTTCACAGGAGACGTTGTCTGAAAATTTGCCAGGAATCATGAGATTCCTGGTGAAGAATTATTCGTTGCGAGAGAATGCCACGTGTCTTGTGAATATGATTGCTCATATTTTCTCGGTCGTCAATGCCTCTCTTCTACGATTAAGATCCCTAATTTCTGTGCAATTAAAGCAACAGTTAGCTCGCTTTTTGGCGGCTCTTGATGAGAAATGCATCGATGTGGATGACGTCATCAAGGAGCATGTGAAATTCGTTCGAAGAGTCTCTGTCGTTGTCTTTGTCAGAAATAATGAGAAAATTGAACACGAGCTAGCCAACTTGCTCCGTGTCTCGTTTGAAGCTCAAGAGTTTGCCGAGGAATTCAGTTTCACGTGGCACGACGTCATCGAAGCGACAACTGCTGATGATAATGTTAGGAAAGCGAGAATTGCAGAGATTTGTCAGAGAAGGACAATTGGGGCGAGGGTACTTCTAGAGACGGTCAATGTGAGTTCACATTTTTCAAGATGGTCAAAACTAATTTTTTTTTCAGAAATGTCAAAAAAATCTGAACGAACTTCTGGACGAACTAATAATGTATGGTAACGATGCGCTTCTGGAGTGAATGAATCAATTCTCTTTGATAATTTTCTATTTATTGTTAGGGTTTCCCTGGTGCAAAATGTATCCTTCTTTTCTCTTTCTTTCTTGTATCCCAACATTTCTTATGCAAAAAAGTG</canonical>
            <polymorphic>TACAGTAACCCAGACGGTGGAGAATAAGAAGAAACAAAAGTTGAAGTTTACTTTGGATTCTATCACTTCCGTAAGACAATATCGACAACAGGCAAAAAATTAATTTGCCTTTTTTTCAGCTTGGTTCAACCCCGAACGTCTCTTCAAAAATGCAATTTGTGCAACCTCTGTCCCCACACTACGAACCCCAGATGCCCCTAATGAAACCTATATTCGCTGCGTGTGACGATGCCTATGAATCCATTTTCCACGTCATCTGGGCTATCGATCTTGCAAGATGCTCTTCACAGGAGACGTTGTCTGAAAATTTGCCAGGAATCATGAGATTCCTGGTGAAGAATTATTCGTTGCGAGAGAATGCCACGTGTCTTGTGAATATGATTGCTCATATTTTCTCGGTCGTCAATGCCTCTCTTCTACGATTAAGATCCCTAATTTCTGTGCAATTAAAGCAACAGTTAGCTCGCTTTTTGGCGGCTCTTGATGAGAAATGCATCGAKGTGGATGACGTCATCAAGGAGCATGTGAAATTCGTTCGAAGAGTCTCTGTCGTTGTCTTTGTCAGAAATAATGAGAAAATTGAACACGAGCTAGCCAACTTGCTCCGTGTCTCGTTTGAAGCTCAAGAGTTTGCCGAGGAATTCAGTTTCACGTGGCACGACGTCATCGAAGCGACAACTGCTGATGATAATGTTAGGAAAGCGAGAATTGCAGAGATTTGTCAGAGAAGGACAATTGGGGCGAGGGTACTTCTAGAGACGGTCAATGTGAGTTCACATTTTTCAAGATGGTCAAAACTAATTTTTTTTTCAGAAATGTCAAAAAAATCTGAACGAACTTCTGGACGAACTAATAATGTATGGTAACGATGCGCTTCTGGAGTGAATGAATCAATTCTCTTTGATAATTTTCTATTTATTGTTAGGGTTTCCCTGGTGCAAAATGTATCCTTCTTTTCTCTTTCTTTCTTGTATCCCAACATTTCTTATGCAAAAAAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 265 231</canonical_bands>
                <polymorphic_bands>735 265</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTATTCGTTGCGAGAGAA</pcr_primer_p1>
		<pcr_primer_p2>CGTGTTCAATTTTCTCATTATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTATTCGTTGCGAGAGAATGCCACGTGTCTTGTGAATATGATTGCTCATATTTTCTCGGTCGTCAATGCCTCTCTTCTACGATTAAGATCCCTAATTTCTGTGCAATTAAAGCAACAGTTAGCTCGCTTTTTGGCGGCTCTTGATGAGAAATGCATCGATGTGGATGACGTCATCAAGGAGCATGTGAAATTCGTTCGAAGAGTCTCTGTCGTTGTCTTTGTCAGAAATAATGAGAAAATTGAACACG</canonical_amplicon>
		<polymorphic_amplicon>AATTATTCGTTGCGAGAGAATGCCACGTGTCTTGTGAATATGATTGCTCATATTTTCTCGGTCGTCAATGCCTCTCTTCTACGATTAAGATCCCTAATTTCTGTGCAATTAAAGCAACAGTTAGCTCGCTTTTTGGCGGCTCTTGATGAGAAATGCATCGAKGTGGATGACGTCATCAAGGAGCATGTGAAATTCGTTCGAAGAGTCTCTGTCGTTGTCTTTGTCAGAAATAATGAGAAAATTGAACACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32924</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>302955</contig_pos>
        <strand>+</strand>
        <context>GAAGTTAAAA[A/G]AGCTTACTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACGGGATCCTTGAAAGTTTAAATGTTTTTCAGATTCTACGAAGTTAAAA</left_flank>
        <right_flank>AGCTTACTTGGTTGTTGGAAAGCTACCACTGGTTTTTGAGGAAGATGAGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTTAAAATTCTCTTAAATTCTGAATCTAAAAGTTCTGAAAATCAGTAATTTGATCATTCGGGAAAGTTGGGTAGTTCGAAAATCAAAACGGATTGAAATTCAGTTTTGTCTAATAGTAAAATAATTTCAAAAGGATATAACCATGTTTGAAGTACATATATCAGTTTTTTAACTTTTCGGAGTTTATATTTTTCACAAACTTTTGCAACAATTCAAAGTAGTCTAGAGTTCTGGCCCATTTCCCTTTTCTTAACTAAAAAAAAAGAAAAACATATAATAAATTCAAAATTTCATTAATTTCAACCATTCCAATTCACAATTAGAACATTTGAACGACAATTTTCCATTCAATGTCTTCCTCTTGCCACCTCATTCACCACATTCTGATTCTTGATTTTTGCCACAACTTTCTCCAGATTCATCACTTTGTTCATGTCAATTACTCGACGGGATCCTTGAAAGTTTAAATGTTTTTCAGATTCTACGAAGTTAAAAGAGCTTACTTGGTTGTTGGAAAGCTACCACTGGTTTTTGAGGAAGATGAGCCACATTTTGTGGAGGAAATATGTCGGGCATCAGAAGAGGGCAAAGAGTAAAAAGGGACACAGAAAGGACTAGAAGTTAAAATAGGCAACGTAACGCTGCATGTCTAACGTTGGGATTAGTGATAAGAGAGACAAAAAGAGATATTGAGAGAGTGTGGGTTGTTGTGGAGACGCAGAGTACCAAATGTCAGCTAGCACTATTGAATGTGGGGAATGGAAATGAGATGAATTAGAAATCAAAAGAGAACGGGATACGGGGAGAAGTAGAAAAATTGAAAATGTAGTACAAGAATTGCTTTTTGAGTTTTAAGTCGTGACTTGAGATTTATGACTTTCGAAAATAGAATAAAATTGGAATAGAATCCTGAAAAAGTGAAAAAAAATTGAAAACCTGAGGATTGATCTAAACTTCGGAGTTTCCTGATTCGGAAACTTTCAGAATTTTGAGAAT</canonical>
            <polymorphic>AATTTTTAAAATTCTCTTAAATTCTGAATCTAAAAGTTCTGAAAATCAGTAATTTGATCATTCGGGAAAGTTGGGTAGTTCGAAAATCAAAACGGATTGAAATTCAGTTTTGTCTAATAGTAAAATAATTTCAAAAGGATATAACCATGTTTGAAGTACATATATCAGTTTTTTAACTTTTCGGAGTTTATATTTTTCACAAACTTTTGCAACAATTCAAAGTAGTCTAGAGTTCTGGCCCATTTCCCTTTTCTTAACTAAAAAAAAAGAAAAACATATAATAAATTCAAAATTTCATTAATTTCAACCATTCCAATTCACAATTAGAACATTTGAACGACAATTTTCCATTCAATGTCTTCCTCTTGCCACCTCATTCACCACATTCTGATTCTTGATTTTTGCCACAACTTTCTCCAGATTCATCACTTTGTTCATGTCAATTACTCGACGGGATCCTTGAAAGTTTAAATGTTTTTCAGATTCTACGAAGTTAAAARAGCTTACTTGGTTGTTGGAAAGCTACCACTGGTTTTTGAGGAAGATGAGCCACATTTTGTGGAGGAAATATGTCGGGCATCAGAAGAGGGCAAAGAGTAAAAAGGGACACAGAAAGGACTAGAAGTTAAAATAGGCAACGTAACGCTGCATGTCTAACGTTGGGATTAGTGATAAGAGAGACAAAAAGAGATATTGAGAGAGTGTGGGTTGTTGTGGAGACGCAGAGTACCAAATGTCAGCTAGCACTATTGAATGTGGGGAATGGAAATGAGATGAATTAGAAATCAAAAGAGAACGGGATACGGGGAGAAGTAGAAAAATTGAAAATGTAGTACAAGAATTGCTTTTTGAGTTTTAAGTCGTGACTTGAGATTTATGACTTTCGAAAATAGAATAAAATTGGAATAGAATCCTGAAAAAGTGAAAAAAAATTGAAAACCTGAGGATTGATCTAAACTTCGGAGTTTCCTGATTCGGAAACTTTCAGAATTTTGAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCACTTTGTTCATGTCAATTA</pcr_primer_p1>
		<pcr_primer_p2>TATCACTAATCCCAACGTTAGAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CATCACTTTGTTCATGTCAATTACTCGACGGGATCCTTGAAAGTTTAAATGTTTTTCAGATTCTACGAAGTTAAAAGAGCTTACTTGGTTGTTGGAAAGCTACCACTGGTTTTTGAGGAAGATGAGCCACATTTTGTGGAGGAAATATGTCGGGCATCAGAAGAGGGCAAAGAGTAAAAAGGGACACAGAAAGGACTAGAAGTTAAAATAGGCAACGTAACGCTGCATGTCTAACGTTGGGATTAGTGATA</canonical_amplicon>
		<polymorphic_amplicon>CATCACTTTGTTCATGTCAATTACTCGACGGGATCCTTGAAAGTTTAAATGTTTTTCAGATTCTACGAAGTTAAAARAGCTTACTTGGTTGTTGGAAAGCTACCACTGGTTTTTGAGGAAGATGAGCCACATTTTGTGGAGGAAATATGTCGGGCATCAGAAGAGGGCAAAGAGTAAAAAGGGACACAGAAAGGACTAGAAGTTAAAATAGGCAACGTAACGCTGCATGTCTAACGTTGGGATTAGTGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32925</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>303210</contig_pos>
        <strand>+</strand>
        <context>CACTATTGAA[A/T]GTGGGGAATG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGGGTTGTTGTGGAGACGCAGAGTACCAAATGTCAGCTAGCACTATTGAA</left_flank>
        <right_flank>GTGGGGAATGGAAATGAGATGAATTAGAAATCAAAAGAGAACGGGATACG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTAAAAAAAAAGAAAAACATATAATAAATTCAAAATTTCATTAATTTCAACCATTCCAATTCACAATTAGAACATTTGAACGACAATTTTCCATTCAATGTCTTCCTCTTGCCACCTCATTCACCACATTCTGATTCTTGATTTTTGCCACAACTTTCTCCAGATTCATCACTTTGTTCATGTCAATTACTCGACGGGATCCTTGAAAGTTTAAATGTTTTTCAGATTCTACGAAGTTAAAAGAGCTTACTTGGTTGTTGGAAAGCTACCACTGGTTTTTGAGGAAGATGAGCCACATTTTGTGGAGGAAATATGTCGGGCATCAGAAGAGGGCAAAGAGTAAAAAGGGACACAGAAAGGACTAGAAGTTAAAATAGGCAACGTAACGCTGCATGTCTAACGTTGGGATTAGTGATAAGAGAGACAAAAAGAGATATTGAGAGAGTGTGGGTTGTTGTGGAGACGCAGAGTACCAAATGTCAGCTAGCACTATTGAATGTGGGGAATGGAAATGAGATGAATTAGAAATCAAAAGAGAACGGGATACGGGGAGAAGTAGAAAAATTGAAAATGTAGTACAAGAATTGCTTTTTGAGTTTTAAGTCGTGACTTGAGATTTATGACTTTCGAAAATAGAATAAAATTGGAATAGAATCCTGAAAAAGTGAAAAAAAATTGAAAACCTGAGGATTGATCTAAACTTCGGAGTTTCCTGATTCGGAAACTTTCAGAATTTTGAGAATTTCAGATCATGGATAAGAAATTCAAAATTCAGGAGAGCGTTGCAAATTTCAATAATTCTGAGCGTATGAAATTCTGGAATTTAGAAATTCCGATTTTCAGAATTTTGAAAATTCAGAATTCAAGAAATTCGAAAATTGAGAAATCGAGAAGGTCAAGAAATCGGAGATTTACATTCGAAATTTTAACGATTCCAAAACTCTGATTGTGAAAACTTTGATTTTCCGAATTTCTAATTTCCGGATTTCTAACTTTCT</canonical>
            <polymorphic>AACTAAAAAAAAAGAAAAACATATAATAAATTCAAAATTTCATTAATTTCAACCATTCCAATTCACAATTAGAACATTTGAACGACAATTTTCCATTCAATGTCTTCCTCTTGCCACCTCATTCACCACATTCTGATTCTTGATTTTTGCCACAACTTTCTCCAGATTCATCACTTTGTTCATGTCAATTACTCGACGGGATCCTTGAAAGTTTAAATGTTTTTCAGATTCTACGAAGTTAAAAGAGCTTACTTGGTTGTTGGAAAGCTACCACTGGTTTTTGAGGAAGATGAGCCACATTTTGTGGAGGAAATATGTCGGGCATCAGAAGAGGGCAAAGAGTAAAAAGGGACACAGAAAGGACTAGAAGTTAAAATAGGCAACGTAACGCTGCATGTCTAACGTTGGGATTAGTGATAAGAGAGACAAAAAGAGATATTGAGAGAGTGTGGGTTGTTGTGGAGACGCAGAGTACCAAATGTCAGCTAGCACTATTGAAWGTGGGGAATGGAAATGAGATGAATTAGAAATCAAAAGAGAACGGGATACGGGGAGAAGTAGAAAAATTGAAAATGTAGTACAAGAATTGCTTTTTGAGTTTTAAGTCGTGACTTGAGATTTATGACTTTCGAAAATAGAATAAAATTGGAATAGAATCCTGAAAAAGTGAAAAAAAATTGAAAACCTGAGGATTGATCTAAACTTCGGAGTTTCCTGATTCGGAAACTTTCAGAATTTTGAGAATTTCAGATCATGGATAAGAAATTCAAAATTCAGGAGAGCGTTGCAAATTTCAATAATTCTGAGCGTATGAAATTCTGGAATTTAGAAATTCCGATTTTCAGAATTTTGAAAATTCAGAATTCAAGAAATTCGAAAATTGAGAAATCGAGAAGGTCAAGAAATCGGAGATTTACATTCGAAATTTTAACGATTCCAAAACTCTGATTGTGAAAACTTTGATTTTCCGAATTTCTAATTTCCGGATTTCTAACTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGTTAAAATAGGCAACGTAA</pcr_primer_p1>
		<pcr_primer_p2>AAGTCACGACTTAAAACTCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGAAGTTAAAATAGGCAACGTAACGCTGCATGTCTAACGTTGGGATTAGTGATAAGAGAGACAAAAAGAGATATTGAGAGAGTGTGGGTTGTTGTGGAGACGCAGAGTACCAAATGTCAGCTAGCACTATTGAATGTGGGGAATGGAAATGAGATGAATTAGAAATCAAAAGAGAACGGGATACGGGGAGAAGTAGAAAAATTGAAAATGTAGTACAAGAATTGCTTTTTGAGTTTTAAGTCGTGACTT</canonical_amplicon>
		<polymorphic_amplicon>AGAAGTTAAAATAGGCAACGTAACGCTGCATGTCTAACGTTGGGATTAGTGATAAGAGAGACAAAAAGAGATATTGAGAGAGTGTGGGTTGTTGTGGAGACGCAGAGTACCAAATGTCAGCTAGCACTATTGAAWGTGGGGAATGGAAATGAGATGAATTAGAAATCAAAAGAGAACGGGATACGGGGAGAAGTAGAAAAATTGAAAATGTAGTACAAGAATTGCTTTTTGAGTTTTAAGTCGTGACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32926</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>357953</contig_pos>
        <strand>+</strand>
        <context>AAGGAGATGC[C/G]GCAGCTCTAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAGCTGGAGCACCAAGAGATCACAAAGCCCCCAGGACCACAAGGAGATGC</left_flank>
        <right_flank>GCAGCTCTAGGAGCACCAAGACCAGCTGGATCAAGAGCAGCCCCAGGAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCTAATTATTTTTTTTAGATTCGAGGATTATTTCTCTCTGAATAAAGAACTGTTTCAACTCTCAACTTTATCAGTTCTCTATCTCTTCTTTTTAAAAGGGCGGTGGTCAAGAGGTGAGAAACAAGACAGATGTTTGATTGTGGAAATAGATCCAGCTGATAAATTGGTTTTCAAAACTGGTTTGGGGAGGATCAGACAAGGTGATTTTGGTATTTGAGTGCGAAGTTGGTTAGAGAAGGAAATGGTTCGAAAACATGAGATTTTGAAAGACAATGGAATCGAAAAGTGGATGACCTGGCGATTATGATAAGAAAAAAATGAAGACTCGTACAGTCCAATAGGGCCCAAAAGCTAGTGAATGACCAGAAACGGATGGTCGATATGATTAAAGCCTAAATCCTATGTTCCAGATGGACCTTCACTCCATCCCGACATGCCGTCCATGCCCAGCTGGAGCACCAAGAGATCACAAAGCCCCCAGGACCACAAGGAGATGCCGCAGCTCTAGGAGCACCAAGACCAGCTGGATCAAGAGCAGCCCCAGGAACTCCAGAAAGACCAGGAAAAGCTGTATTCCTAGGACAATCACGATCTGATTTTCAATCTGAATCTGGCCCAGGAGCTCCAGGACCTGCTGAACCACAAAGACCACCACAACCATACGGAGCACCAGGACATCCAGGAGCGAATGGAAACCCAGGAGCTCCAGGACAACCAGAGCAATCTGGAGGATCCGACTTCCGACTTCCGGGCTTAAAAATTTCAATTCCTGACATCTCTGGTTGGTATGAAGAACTTCTGATATAACCTTCATAAAACTGAAAATTTTCTATTCCCTAATTAGCAGTGAATTGTATCAAAACAATTTTCGCTCTCAATAATTCAAGGTTACCAATTCCTGCAAACCGTTCCATTACATCACCTTCAAAGGAATCATGTGTTTTTCGGTTTTCTGTCCTCGATTCTCTGTGTTGTGTCACCTCTATTAACATGAAACA</canonical>
            <polymorphic>TCTCTAATTATTTTTTTTAGATTCGAGGATTATTTCTCTCTGAATAAAGAACTGTTTCAACTCTCAACTTTATCAGTTCTCTATCTCTTCTTTTTAAAAGGGCGGTGGTCAAGAGGTGAGAAACAAGACAGATGTTTGATTGTGGAAATAGATCCAGCTGATAAATTGGTTTTCAAAACTGGTTTGGGGAGGATCAGACAAGGTGATTTTGGTATTTGAGTGCGAAGTTGGTTAGAGAAGGAAATGGTTCGAAAACATGAGATTTTGAAAGACAATGGAATCGAAAAGTGGATGACCTGGCGATTATGATAAGAAAAAAATGAAGACTCGTACAGTCCAATAGGGCCCAAAAGCTAGTGAATGACCAGAAACGGATGGTCGATATGATTAAAGCCTAAATCCTATGTTCCAGATGGACCTTCACTCCATCCCGACATGCCGTCCATGCCCAGCTGGAGCACCAAGAGATCACAAAGCCCCCAGGACCACAAGGAGATGCSGCAGCTCTAGGAGCACCAAGACCAGCTGGATCAAGAGCAGCCCCAGGAACTCCAGAAAGACCAGGAAAAGCTGTATTCCTAGGACAATCACGATCTGATTTTCAATCTGAATCTGGCCCAGGAGCTCCAGGACCTGCTGAACCACAAAGACCACCACAACCATACGGAGCACCAGGACATCCAGGAGCGAATGGAAACCCAGGAGCTCCAGGACAACCAGAGCAATCTGGAGGATCCGACTTCCGACTTCCGGGCTTAAAAATTTCAATTCCTGACATCTCTGGTTGGTATGAAGAACTTCTGATATAACCTTCATAAAACTGAAAATTTTCTATTCCCTAATTAGCAGTGAATTGTATCAAAACAATTTTCGCTCTCAATAATTCAAGGTTACCAATTCCTGCAAACCGTTCCATTACATCACCTTCAAAGGAATCATGTGTTTTTCGGTTTTCTGTCCTCGATTCTCTGTGTTGTGTCACCTCTATTAACATGAAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 398 101</canonical_bands>
                <polymorphic_bands>899 101</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCTAGTGAATGACCAGAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTGTCCTAGGAATACAGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AAGCTAGTGAATGACCAGAAACGGATGGTCGATATGATTAAAGCCTAAATCCTATGTTCCAGATGGACCTTCACTCCATCCCGACATGCCGTCCATGCCCAGCTGGAGCACCAAGAGATCACAAAGCCCCCAGGACCACAAGGAGATGCCGCAGCTCTAGGAGCACCAAGACCAGCTGGATCAAGAGCAGCCCCAGGAACTCCAGAAAGACCAGGAAAAGCTGTATTCCTAGGACAAT</canonical_amplicon>
		<polymorphic_amplicon>AAGCTAGTGAATGACCAGAAACGGATGGTCGATATGATTAAAGCCTAAATCCTATGTTCCAGATGGACCTTCACTCCATCCCGACATGCCGTCCATGCCCAGCTGGAGCACCAAGAGATCACAAAGCCCCCAGGACCACAAGGAGATGCSGCAGCTCTAGGAGCACCAAGACCAGCTGGATCAAGAGCAGCCCCAGGAACTCCAGAAAGACCAGGAAAAGCTGTATTCCTAGGACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32927</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>388497</contig_pos>
        <strand></strand>
        <context>cccacgatAG[G/T]CTTCTTAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTATTTACCTAGATTTTTCTAAGGCTTTTGATAAGATTCCCCACGATAG</left_flank>
        <right_flank>CTTCTTAACAAACTACTAAAACTCAACCTGAATTCTCACTTGTTAATGTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAACGAGAGGAATGTCGTTATTCTCGGGGCGGCAGCTTTTCCCTTTTTCTTTCGTATAATTAGTCACAATCAGCTGTTGTTGTCTCTGTCCTTTTTCTTCTCCATTATTCTCGAGGTCAAGAAAATTGTAATAATCATTCGCCGAGAAACTTATTGATGTTTGGGCAAAGAGAAAGGCTTGGTTTACGTTGTTTCTTGAGAAATACCGTTACCTAAAAAAAGTAAACCAACGAATCCAGTGGACTACCGTCCAATTTCTCTCACTTCGCACTTATGTAGACTGTATGAACGATGTATCTTAAGTAGACTAGCTCCCTATCTAGATGAGAGACAGTTTTGGAGTATGAATCAGCACGGTTTTAGAGCCAAAAAATCAACAGTTACTAATATGATGGAGACATTAACCGACTGGACCAATATGATTGAAAATAAGGGACAAGTTGATGTTATTTACCTAGATTTTTCTAAGGCTTTTGATAAGATTCCCCACGATAGGCTTCTTAACAAACTACTAAAACTCAACCTGAATTCTCACTTGTTAATGTGGCTTGATGATTTTCTTTCTGGTCGTAATTATAGAGTAAAGGTGGGGTCCACACTTTCAGGTTCAAAACGAGCAATTTGCGGAGTCCCGCAAGGGGCAGTTTTGTCCCCAGTTCTTTTTGGGATCTATGTTAATGAAATATCGTCTTTCCTCCCTCACGAAGTTCATTGTAAACAGTTTGCAGATGATACTAAACTATATGCCTCGATTAACGAAAATGATCCTGACAACCCGCTGCAAAAAAGCATAGACTTAATACAAAATTGGCCTGAAAAATCCAAACTAACAAGGCTAAATTTATCTTGTCTCAAGTTTTCCAGCAATTCAATAGTAAAAACACCCGATTAATGGTTCTTTTATACAAAGTTTTCATAAGGCCTGTGCTCGAATATGGTACGGTAATCAGTAGTCCCTTCAAATTATCAGATATTAAATTAATAGAATCAGTGCAA</canonical>
            <polymorphic>AAAAAAACGAGAGGAATGTCGTTATTCTCGGGGCGGCAGCTTTTCCCTTTTTCTTTCGTATAATTAGTCACAATCAGCTGTTGTTGTCTCTGTCCTTTTTCTTCTCCATTATTCTCGAGGTCAAGAAAATTGTAATAATCATTCGCCGAGAAACTTATTGATGTTTGGGCAAAGAGAAAGGCTTGGTTTACGTTGTTTCTTGAGAAATACCGTTACCTAAAAAAAGTAAACCAACGAATCCAGTGGACTACCGTCCAATTTCTCTCACTTCGCACTTATGTAGACTGTATGAACGATGTATCTTAAGTAGACTAGCTCCCTATCTAGATGAGAGACAGTTTTGGAGTATGAATCAGCACGGTTTTAGAGCCAAAAAATCAACAGTTACTAATATGATGGAGACATTAACCGACTGGACCAATATGATTGAAAATAAGGGACAAGTTGATGTTATTTACCTAGATTTTTCTAAGGCTTTTGATAAGATTCCCCACGATAGKCTTCTTAACAAACTACTAAAACTCAACCTGAATTCTCACTTGTTAATGTGGCTTGATGATTTTCTTTCTGGTCGTAATTATAGAGTAAAGGTGGGGTCCACACTTTCAGGTTCAAAACGAGCAATTTGCGGAGTCCCGCAAGGGGCAGTTTTGTCCCCAGTTCTTTTTGGGATCTATGTTAATGAAATATCGTCTTTCCTCCCTCACGAAGTTCATTGTAAACAGTTTGCAGATGATACTAAACTATATGCCTCGATTAACGAAAATGATCCTGACAACCCGCTGCAAAAAAGCATAGACTTAATACAAAATTGGCCTGAAAAATCCAAACTAACAAGGCTAAATTTATCTTGTCTCAAGTTTTCCAGCAATTCAATAGTAAAAACACCCGATTAATGGTTCTTTTATACAAAGTTTTCATAAGGCCTGTGCTCGAATATGGTACGGTAATCAGTAGTCCCTTCAAATTATCAGATATTAAATTAATAGAATCAGTGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>496 254 145 105</canonical_bands>
                <polymorphic_bands>641 254 105</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>264 134 105 104 86 75 54 51 39 38 26 24</canonical_bands>
                <polymorphic_bands>264 134 105 104 86 77 75 54 39 38 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTGGACTACCGTCCAATTT</pcr_primer_p1>
		<pcr_primer_p2>AGCCACATTAACAAGTGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>AGTGGACTACCGTCCAATTTCTCTCACTTCGCACTTATGTAGACTGTATGAACGATGTATCTTAAGTAGACTAGCTCCCTATCTAGATGAGAGACAGTTTTGGAGTATGAATCAGCACGGTTTTAGAGCCAAAAAATCAACAGTTACTAATATGATGGAGACATTAACCGACTGGACCAATATGATTGAAAATAAGGGACAAGTTGATGTTATTTACCTAGATTTTTCTAAGGCTTTTGATAAGATTCCCCACGATAGGCTTCTTAACAAACTACTAAAACTCAACCTGAATTCTCACTTGTTAATGTGGCT</canonical_amplicon>
		<polymorphic_amplicon>AGTGGACTACCGTCCAATTTCTCTCACTTCGCACTTATGTAGACTGTATGAACGATGTATCTTAAGTAGACTAGCTCCCTATCTAGATGAGAGACAGTTTTGGAGTATGAATCAGCACGGTTTTAGAGCCAAAAAATCAACAGTTACTAATATGATGGAGACATTAACCGACTGGACCAATATGATTGAAAATAAGGGACAAGTTGATGTTATTTACCTAGATTTTTCTAAGGCTTTTGATAAGATTCCCCACGATAGKCTTCTTAACAAACTACTAAAACTCAACCTGAATTCTCACTTGTTAATGTGGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32928</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>392407</contig_pos>
        <strand>+</strand>
        <context>CCTAAAGAAA[A/C]TTTTTTTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCCTGTATGTTTCCATTTGCTGCCCATTTGAAAACATTTACCTAAAGAAA</left_flank>
        <right_flank>TTTTTTTTCTAATTTTTATTAGCATTGATAATCGAGTAAATGAAAAAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAATTCCGGCCAAATTCTGACTATTGTCCGTCCCACTGCTGTCAGTGGGCAGCTTCTGACCAAAATCTGACCAAAATCCGTCCAAAAGCCGAACCCCCTTCAACTTCGTCCAGAAGTTGCAAGCCGACAGCCGAGATACTGACCTATTCCGTATATGGAATTTTTCAATCAAGAGACCGAGCACGTCCACAACCCAATTTGAAGTCATTGGAAAAAGTTTGGACCTAGAATGTGCCAAGTTATCTCCAAAACACCCCCCGTGCCACAGTAGATGCGTTCCCGAAGAGACACATGGATCTTGCGAAGAACAAAGGCAATCGCTTCGAACAACTTTTATAATTTCATGTTTAGAAAGTATTCAGTAAGCTATTGTTAAATTTTCAAGTCTATTCGAGTATTTTCGGAGAAGTTACAGCACTTTGAATGTGTTACCATACTTTTGGGCCACCCTGTATGTTTCCATTTGCTGCCCATTTGAAAACATTTACCTAAAGAAATTTTTTTTTCTAATTTTTATTAGCATTGATAATCGAGTAAATGAAAAAATAATCGGGTTAAAATTGAAGCTTTCAAAGCAATAAAATGCAAAATTACATTATGGAAAATCTGTTTTTATGCAAGGTTATGAAAGTTGATGAAAAAGTGCATTTGAGCCATTGTTTTTTGGGGAGTAATTGTATTAGTAAAAATAAAGGACTTGCGAGTATCTGAAATTAAAACTAGGGGTCGGGGGTTGAAAAGGCGAAGAGAAAGAAAGAAAAACGGAATCAGGGGGAAAAATCAAGATCCTTCCGAATTTACTTGCGGCAGCAGACGCAACGGACAAGGGAGATGACGAAGGAGGCGATGAAAATGACTCCGAAGAGAGCAAGAGTCACCCAGACCCAGGTCTGAAAATCATAAAGTTATGGTGGGATAGGATTACGGTAGAAAATAGCGTGCACACAGGTCTATTAGTAAACTAGCAGCTTTAAAATAACGCTTCCATTTCGGCCGGT</canonical>
            <polymorphic>TCAAATTCCGGCCAAATTCTGACTATTGTCCGTCCCACTGCTGTCAGTGGGCAGCTTCTGACCAAAATCTGACCAAAATCCGTCCAAAAGCCGAACCCCCTTCAACTTCGTCCAGAAGTTGCAAGCCGACAGCCGAGATACTGACCTATTCCGTATATGGAATTTTTCAATCAAGAGACCGAGCACGTCCACAACCCAATTTGAAGTCATTGGAAAAAGTTTGGACCTAGAATGTGCCAAGTTATCTCCAAAACACCCCCCGTGCCACAGTAGATGCGTTCCCGAAGAGACACATGGATCTTGCGAAGAACAAAGGCAATCGCTTCGAACAACTTTTATAATTTCATGTTTAGAAAGTATTCAGTAAGCTATTGTTAAATTTTCAAGTCTATTCGAGTATTTTCGGAGAAGTTACAGCACTTTGAATGTGTTACCATACTTTTGGGCCACCCTGTATGTTTCCATTTGCTGCCCATTTGAAAACATTTACCTAAAGAAAMTTTTTTTTCTAATTTTTATTAGCATTGATAATCGAGTAAATGAAAAAATAATCGGGTTAAAATTGAAGCTTTCAAAGCAATAAAATGCAAAATTACATTATGGAAAATCTGTTTTTATGCAAGGTTATGAAAGTTGATGAAAAAGTGCATTTGAGCCATTGTTTTTTGGGGAGTAATTGTATTAGTAAAAATAAAGGACTTGCGAGTATCTGAAATTAAAACTAGGGGTCGGGGGTTGAAAAGGCGAAGAGAAAGAAAGAAAAACGGAATCAGGGGGAAAAATCAAGATCCTTCCGAATTTACTTGCGGCAGCAGACGCAACGGACAAGGGAGATGACGAAGGAGGCGATGAAAATGACTCCGAAGAGAGCAAGAGTCACCCAGACCCAGGTCTGAAAATCATAAAGTTATGGTGGGATAGGATTACGGTAGAAAATAGCGTGCACACAGGTCTATTAGTAAACTAGCAGCTTTAAAATAACGCTTCCATTTCGGCCGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>299 217 204 146 120 11 3</canonical_bands>
                <polymorphic_bands>419 217 204 146 11 3</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>204 146 142 120 84 83 50 39 38 37 30 13 11 3</canonical_bands>
                <polymorphic_bands>204 146 142 133 84 83 50 39 38 37 30 11 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTATTTTCGGAGAAGTTACAGC</pcr_primer_p1>
		<pcr_primer_p2>CTTTTTCATCAACTTTCATAACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTATTTTCGGAGAAGTTACAGCACTTTGAATGTGTTACCATACTTTTGGGCCACCCTGTATGTTTCCATTTGCTGCCCATTTGAAAACATTTACCTAAAGAAATTTTTTTTTCTAATTTTTATTAGCATTGATAATCGAGTAAATGAAAAAATAATCGGGTTAAAATTGAAGCTTTCAAAGCAATAAAATGCAAAATTACATTATGGAAAATCTGTTTTTATGCAAGGTTATGAAAGTTGATGAAAAAG</canonical_amplicon>
		<polymorphic_amplicon>AGTATTTTCGGAGAAGTTACAGCACTTTGAATGTGTTACCATACTTTTGGGCCACCCTGTATGTTTCCATTTGCTGCCCATTTGAAAACATTTACCTAAAGAAAMTTTTTTTTCTAATTTTTATTAGCATTGATAATCGAGTAAATGAAAAAATAATCGGGTTAAAATTGAAGCTTTCAAAGCAATAAAATGCAAAATTACATTATGGAAAATCTGTTTTTATGCAAGGTTATGAAAGTTGATGAAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32929</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>392451</contig_pos>
        <strand></strand>
        <context>GAGTAAATGA[A/C]AAAATAATCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGAAATTTTTTTTTCTAATTTTTATTAGCATTGATAATCGAGTAAATGA</left_flank>
        <right_flank>AAAATAATCGGGTTAAAATTGAAGCTTTCAAAGCAATAAAATGCAAAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTGGGCAGCTTCTGACCAAAATCTGACCAAAATCCGTCCAAAAGCCGAACCCCCTTCAACTTCGTCCAGAAGTTGCAAGCCGACAGCCGAGATACTGACCTATTCCGTATATGGAATTTTTCAATCAAGAGACCGAGCACGTCCACAACCCAATTTGAAGTCATTGGAAAAAGTTTGGACCTAGAATGTGCCAAGTTATCTCCAAAACACCCCCCGTGCCACAGTAGATGCGTTCCCGAAGAGACACATGGATCTTGCGAAGAACAAAGGCAATCGCTTCGAACAACTTTTATAATTTCATGTTTAGAAAGTATTCAGTAAGCTATTGTTAAATTTTCAAGTCTATTCGAGTATTTTCGGAGAAGTTACAGCACTTTGAATGTGTTACCATACTTTTGGGCCACCCTGTATGTTTCCATTTGCTGCCCATTTGAAAACATTTACCTAAAGAAATTTTTTTTTCTAATTTTTATTAGCATTGATAATCGAGTAAATGAAAAAATAATCGGGTTAAAATTGAAGCTTTCAAAGCAATAAAATGCAAAATTACATTATGGAAAATCTGTTTTTATGCAAGGTTATGAAAGTTGATGAAAAAGTGCATTTGAGCCATTGTTTTTTGGGGAGTAATTGTATTAGTAAAAATAAAGGACTTGCGAGTATCTGAAATTAAAACTAGGGGTCGGGGGTTGAAAAGGCGAAGAGAAAGAAAGAAAAACGGAATCAGGGGGAAAAATCAAGATCCTTCCGAATTTACTTGCGGCAGCAGACGCAACGGACAAGGGAGATGACGAAGGAGGCGATGAAAATGACTCCGAAGAGAGCAAGAGTCACCCAGACCCAGGTCTGAAAATCATAAAGTTATGGTGGGATAGGATTACGGTAGAAAATAGCGTGCACACAGGTCTATTAGTAAACTAGCAGCTTTAAAATAACGCTTCCATTTCGGCCGGTCGAAACTTGGAGGCGGCCGACCGACAGAGCTGACCGATCGGTTA</canonical>
            <polymorphic>CAGTGGGCAGCTTCTGACCAAAATCTGACCAAAATCCGTCCAAAAGCCGAACCCCCTTCAACTTCGTCCAGAAGTTGCAAGCCGACAGCCGAGATACTGACCTATTCCGTATATGGAATTTTTCAATCAAGAGACCGAGCACGTCCACAACCCAATTTGAAGTCATTGGAAAAAGTTTGGACCTAGAATGTGCCAAGTTATCTCCAAAACACCCCCCGTGCCACAGTAGATGCGTTCCCGAAGAGACACATGGATCTTGCGAAGAACAAAGGCAATCGCTTCGAACAACTTTTATAATTTCATGTTTAGAAAGTATTCAGTAAGCTATTGTTAAATTTTCAAGTCTATTCGAGTATTTTCGGAGAAGTTACAGCACTTTGAATGTGTTACCATACTTTTGGGCCACCCTGTATGTTTCCATTTGCTGCCCATTTGAAAACATTTACCTAAAGAAATTTTTTTTTCTAATTTTTATTAGCATTGATAATCGAGTAAATGAMAAAATAATCGGGTTAAAATTGAAGCTTTCAAAGCAATAAAATGCAAAATTACATTATGGAAAATCTGTTTTTATGCAAGGTTATGAAAGTTGATGAAAAAGTGCATTTGAGCCATTGTTTTTTGGGGAGTAATTGTATTAGTAAAAATAAAGGACTTGCGAGTATCTGAAATTAAAACTAGGGGTCGGGGGTTGAAAAGGCGAAGAGAAAGAAAGAAAAACGGAATCAGGGGGAAAAATCAAGATCCTTCCGAATTTACTTGCGGCAGCAGACGCAACGGACAAGGGAGATGACGAAGGAGGCGATGAAAATGACTCCGAAGAGAGCAAGAGTCACCCAGACCCAGGTCTGAAAATCATAAAGTTATGGTGGGATAGGATTACGGTAGAAAATAGCGTGCACACAGGTCTATTAGTAAACTAGCAGCTTTAAAATAACGCTTCCATTTCGGCCGGTCGAAACTTGGAGGCGGCCGACCGACAGAGCTGACCGATCGGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTATTTTCGGAGAAGTTACAGC</pcr_primer_p1>
		<pcr_primer_p2>CTTTTTCATCAACTTTCATAACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTATTTTCGGAGAAGTTACAGCACTTTGAATGTGTTACCATACTTTTGGGCCACCCTGTATGTTTCCATTTGCTGCCCATTTGAAAACATTTACCTAAAGAAATTTTTTTTTCTAATTTTTATTAGCATTGATAATCGAGTAAATGAAAAAATAATCGGGTTAAAATTGAAGCTTTCAAAGCAATAAAATGCAAAATTACATTATGGAAAATCTGTTTTTATGCAAGGTTATGAAAGTTGATGAAAAAG</canonical_amplicon>
		<polymorphic_amplicon>AGTATTTTCGGAGAAGTTACAGCACTTTGAATGTGTTACCATACTTTTGGGCCACCCTGTATGTTTCCATTTGCTGCCCATTTGAAAACATTTACCTAAAGAAATTTTTTTTTCTAATTTTTATTAGCATTGATAATCGAGTAAATGAMAAAATAATCGGGTTAAAATTGAAGCTTTCAAAGCAATAAAATGCAAAATTACATTATGGAAAATCTGTTTTTATGCAAGGTTATGAAAGTTGATGAAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32930</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>392575</contig_pos>
        <strand>+</strand>
        <context>ATTGTTTTTT[A/G]RGGAGTAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCAAGGTTATGAAAGTTGATGAAAAAGTGCATTTGAGCCATTGTTTTTT</left_flank>
        <right_flank>GGGAGTAATTGTATTAGTAAAAATAAAGGACTTGCGAGTATCTGAAATTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCAAGAGACCGAGCACGTCCACAACCCAATTTGAAGTCATTGGAAAAAGTTTGGACCTAGAATGTGCCAAGTTATCTCCAAAACACCCCCCGTGCCACAGTAGATGCGTTCCCGAAGAGACACATGGATCTTGCGAAGAACAAAGGCAATCGCTTCGAACAACTTTTATAATTTCATGTTTAGAAAGTATTCAGTAAGCTATTGTTAAATTTTCAAGTCTATTCGAGTATTTTCGGAGAAGTTACAGCACTTTGAATGTGTTACCATACTTTTGGGCCACCCTGTATGTTTCCATTTGCTGCCCATTTGAAAACATTTACCTAAAGAAATTTTTTTTTCTAATTTTTATTAGCATTGATAATCGAGTAAATGAAAAAATAATCGGGTTAAAATTGAAGCTTTCAAAGCAATAAAATGCAAAATTACATTATGGAAAATCTGTTTTTATGCAAGGTTATGAAAGTTGATGAAAAAGTGCATTTGAGCCATTGTTTTTTGGGGAGTAATTGTATTAGTAAAAATAAAGGACTTGCGAGTATCTGAAATTAAAACTAGGGGTCGGGGGTTGAAAAGGCGAAGAGAAAGAAAGAAAAACGGAATCAGGGGGAAAAATCAAGATCCTTCCGAATTTACTTGCGGCAGCAGACGCAACGGACAAGGGAGATGACGAAGGAGGCGATGAAAATGACTCCGAAGAGAGCAAGAGTCACCCAGACCCAGGTCTGAAAATCATAAAGTTATGGTGGGATAGGATTACGGTAGAAAATAGCGTGCACACAGGTCTATTAGTAAACTAGCAGCTTTAAAATAACGCTTCCATTTCGGCCGGTCGAAACTTGGAGGCGGCCGACCGACAGAGCTGACCGATCGGTTAGTCGGCTGGGTCCGGTCGGTCGGCTAAATTTCCCGACCGAATGGTAACCATATTGAGTAGGATAGGGATACGTCAGTGACTAGGCACACTGAAACAAAAAAGTTTGAAATGCATCGCTAACCTG</canonical>
            <polymorphic>AATCAAGAGACCGAGCACGTCCACAACCCAATTTGAAGTCATTGGAAAAAGTTTGGACCTAGAATGTGCCAAGTTATCTCCAAAACACCCCCCGTGCCACAGTAGATGCGTTCCCGAAGAGACACATGGATCTTGCGAAGAACAAAGGCAATCGCTTCGAACAACTTTTATAATTTCATGTTTAGAAAGTATTCAGTAAGCTATTGTTAAATTTTCAAGTCTATTCGAGTATTTTCGGAGAAGTTACAGCACTTTGAATGTGTTACCATACTTTTGGGCCACCCTGTATGTTTCCATTTGCTGCCCATTTGAAAACATTTACCTAAAGAAATTTTTTTTTCTAATTTTTATTAGCATTGATAATCGAGTAAATGAAAAAATAATCGGGTTAAAATTGAAGCTTTCAAAGCAATAAAATGCAAAATTACATTATGGAAAATCTGTTTTTATGCAAGGTTATGAAAGTTGATGAAAAAGTGCATTTGAGCCATTGTTTTTTRGGGAGTAATTGTATTAGTAAAAATAAAGGACTTGCGAGTATCTGAAATTAAAACTAGGGGTCGGGGGTTGAAAAGGCGAAGAGAAAGAAAGAAAAACGGAATCAGGGGGAAAAATCAAGATCCTTCCGAATTTACTTGCGGCAGCAGACGCAACGGACAAGGGAGATGACGAAGGAGGCGATGAAAATGACTCCGAAGAGAGCAAGAGTCACCCAGACCCAGGTCTGAAAATCATAAAGTTATGGTGGGATAGGATTACGGTAGAAAATAGCGTGCACACAGGTCTATTAGTAAACTAGCAGCTTTAAAATAACGCTTCCATTTCGGCCGGTCGAAACTTGGAGGCGGCCGACCGACAGAGCTGACCGATCGGTTAGTCGGCTGGGTCCGGTCGGTCGGCTAAATTTCCCGACCGAATGGTAACCATATTGAGTAGGATAGGGATACGTCAGTGACTAGGCACACTGAAACAAAAAAGTTTGAAATGCATCGCTAACCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCATTGATAATCGAGTAAATGA</pcr_primer_p1>
		<pcr_primer_p2>GATTCCGTTTTTCTTTCTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGCATTGATAATCGAGTAAATGAAAAAATAATCGGGTTAAAATTGAAGCTTTCAAAGCAATAAAATGCAAAATTACATTATGGAAAATCTGTTTTTATGCAAGGTTATGAAAGTTGATGAAAAAGTGCATTTGAGCCATTGTTTTTTGGGGAGTAATTGTATTAGTAAAAATAAAGGACTTGCGAGTATCTGAAATTAAAACTAGGGGTCGGGGGTTGAAAAGGCGAAGAGAAAGAAAGAAAAACGGAATC</canonical_amplicon>
		<polymorphic_amplicon>AGCATTGATAATCGAGTAAATGAAAAAATAATCGGGTTAAAATTGAAGCTTTCAAAGCAATAAAATGCAAAATTACATTATGGAAAATCTGTTTTTATGCAAGGTTATGAAAGTTGATGAAAAAGTGCATTTGAGCCATTGTTTTTTRGGGAGTAATTGTATTAGTAAAAATAAAGGACTTGCGAGTATCTGAAATTAAAACTAGGGGTCGGGGGTTGAAAAGGCGAAGAGAAAGAAAGAAAAACGGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32931</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>392576</contig_pos>
        <strand>+</strand>
        <context>TTGTTTTTTR[A/G]GGAGTAATTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCAAGGTTATGAAAGTTGATGAAAAAGTGCATTTGAGCCATTGTTTTTTG</left_flank>
        <right_flank>GGAGTAATTGTATTAGTAAAAATAAAGGACTTGCGAGTATCTGAAATTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAAGAGACCGAGCACGTCCACAACCCAATTTGAAGTCATTGGAAAAAGTTTGGACCTAGAATGTGCCAAGTTATCTCCAAAACACCCCCCGTGCCACAGTAGATGCGTTCCCGAAGAGACACATGGATCTTGCGAAGAACAAAGGCAATCGCTTCGAACAACTTTTATAATTTCATGTTTAGAAAGTATTCAGTAAGCTATTGTTAAATTTTCAAGTCTATTCGAGTATTTTCGGAGAAGTTACAGCACTTTGAATGTGTTACCATACTTTTGGGCCACCCTGTATGTTTCCATTTGCTGCCCATTTGAAAACATTTACCTAAAGAAATTTTTTTTTCTAATTTTTATTAGCATTGATAATCGAGTAAATGAAAAAATAATCGGGTTAAAATTGAAGCTTTCAAAGCAATAAAATGCAAAATTACATTATGGAAAATCTGTTTTTATGCAAGGTTATGAAAGTTGATGAAAAAGTGCATTTGAGCCATTGTTTTTTGGGGAGTAATTGTATTAGTAAAAATAAAGGACTTGCGAGTATCTGAAATTAAAACTAGGGGTCGGGGGTTGAAAAGGCGAAGAGAAAGAAAGAAAAACGGAATCAGGGGGAAAAATCAAGATCCTTCCGAATTTACTTGCGGCAGCAGACGCAACGGACAAGGGAGATGACGAAGGAGGCGATGAAAATGACTCCGAAGAGAGCAAGAGTCACCCAGACCCAGGTCTGAAAATCATAAAGTTATGGTGGGATAGGATTACGGTAGAAAATAGCGTGCACACAGGTCTATTAGTAAACTAGCAGCTTTAAAATAACGCTTCCATTTCGGCCGGTCGAAACTTGGAGGCGGCCGACCGACAGAGCTGACCGATCGGTTAGTCGGCTGGGTCCGGTCGGTCGGCTAAATTTCCCGACCGAATGGTAACCATATTGAGTAGGATAGGGATACGTCAGTGACTAGGCACACTGAAACAAAAAAGTTTGAAATGCATCGCTAACCTGA</canonical>
            <polymorphic>ATCAAGAGACCGAGCACGTCCACAACCCAATTTGAAGTCATTGGAAAAAGTTTGGACCTAGAATGTGCCAAGTTATCTCCAAAACACCCCCCGTGCCACAGTAGATGCGTTCCCGAAGAGACACATGGATCTTGCGAAGAACAAAGGCAATCGCTTCGAACAACTTTTATAATTTCATGTTTAGAAAGTATTCAGTAAGCTATTGTTAAATTTTCAAGTCTATTCGAGTATTTTCGGAGAAGTTACAGCACTTTGAATGTGTTACCATACTTTTGGGCCACCCTGTATGTTTCCATTTGCTGCCCATTTGAAAACATTTACCTAAAGAAATTTTTTTTTCTAATTTTTATTAGCATTGATAATCGAGTAAATGAAAAAATAATCGGGTTAAAATTGAAGCTTTCAAAGCAATAAAATGCAAAATTACATTATGGAAAATCTGTTTTTATGCAAGGTTATGAAAGTTGATGAAAAAGTGCATTTGAGCCATTGTTTTTTGRGGAGTAATTGTATTAGTAAAAATAAAGGACTTGCGAGTATCTGAAATTAAAACTAGGGGTCGGGGGTTGAAAAGGCGAAGAGAAAGAAAGAAAAACGGAATCAGGGGGAAAAATCAAGATCCTTCCGAATTTACTTGCGGCAGCAGACGCAACGGACAAGGGAGATGACGAAGGAGGCGATGAAAATGACTCCGAAGAGAGCAAGAGTCACCCAGACCCAGGTCTGAAAATCATAAAGTTATGGTGGGATAGGATTACGGTAGAAAATAGCGTGCACACAGGTCTATTAGTAAACTAGCAGCTTTAAAATAACGCTTCCATTTCGGCCGGTCGAAACTTGGAGGCGGCCGACCGACAGAGCTGACCGATCGGTTAGTCGGCTGGGTCCGGTCGGTCGGCTAAATTTCCCGACCGAATGGTAACCATATTGAGTAGGATAGGGATACGTCAGTGACTAGGCACACTGAAACAAAAAAGTTTGAAATGCATCGCTAACCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCATTGATAATCGAGTAAATGA</pcr_primer_p1>
		<pcr_primer_p2>GATTCCGTTTTTCTTTCTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGCATTGATAATCGAGTAAATGAAAAAATAATCGGGTTAAAATTGAAGCTTTCAAAGCAATAAAATGCAAAATTACATTATGGAAAATCTGTTTTTATGCAAGGTTATGAAAGTTGATGAAAAAGTGCATTTGAGCCATTGTTTTTTGGGGAGTAATTGTATTAGTAAAAATAAAGGACTTGCGAGTATCTGAAATTAAAACTAGGGGTCGGGGGTTGAAAAGGCGAAGAGAAAGAAAGAAAAACGGAATC</canonical_amplicon>
		<polymorphic_amplicon>AGCATTGATAATCGAGTAAATGAAAAAATAATCGGGTTAAAATTGAAGCTTTCAAAGCAATAAAATGCAAAATTACATTATGGAAAATCTGTTTTTATGCAAGGTTATGAAAGTTGATGAAAAAGTGCATTTGAGCCATTGTTTTTTGRGGAGTAATTGTATTAGTAAAAATAAAGGACTTGCGAGTATCTGAAATTAAAACTAGGGGTCGGGGGTTGAAAAGGCGAAGAGAAAGAAAGAAAAACGGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32932</snp_id>
        <super_contig>c007700760.Contig8</super_contig>
        <contig_pos>392597</contig_pos>
        <strand>+</strand>
        <context>TATTAGTAAA[A/G]ATAAAGGACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAGTGCATTTGAGCCATTGTTTTTTGGGGAGTAATTGTATTAGTAAA</left_flank>
        <right_flank>ATAAAGGACTTGCGAGTATCTGAAATTAAAACTAGGGGTCGGGGGTTGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAACCCAATTTGAAGTCATTGGAAAAAGTTTGGACCTAGAATGTGCCAAGTTATCTCCAAAACACCCCCCGTGCCACAGTAGATGCGTTCCCGAAGAGACACATGGATCTTGCGAAGAACAAAGGCAATCGCTTCGAACAACTTTTATAATTTCATGTTTAGAAAGTATTCAGTAAGCTATTGTTAAATTTTCAAGTCTATTCGAGTATTTTCGGAGAAGTTACAGCACTTTGAATGTGTTACCATACTTTTGGGCCACCCTGTATGTTTCCATTTGCTGCCCATTTGAAAACATTTACCTAAAGAAATTTTTTTTTCTAATTTTTATTAGCATTGATAATCGAGTAAATGAAAAAATAATCGGGTTAAAATTGAAGCTTTCAAAGCAATAAAATGCAAAATTACATTATGGAAAATCTGTTTTTATGCAAGGTTATGAAAGTTGATGAAAAAGTGCATTTGAGCCATTGTTTTTTGGGGAGTAATTGTATTAGTAAAAATAAAGGACTTGCGAGTATCTGAAATTAAAACTAGGGGTCGGGGGTTGAAAAGGCGAAGAGAAAGAAAGAAAAACGGAATCAGGGGGAAAAATCAAGATCCTTCCGAATTTACTTGCGGCAGCAGACGCAACGGACAAGGGAGATGACGAAGGAGGCGATGAAAATGACTCCGAAGAGAGCAAGAGTCACCCAGACCCAGGTCTGAAAATCATAAAGTTATGGTGGGATAGGATTACGGTAGAAAATAGCGTGCACACAGGTCTATTAGTAAACTAGCAGCTTTAAAATAACGCTTCCATTTCGGCCGGTCGAAACTTGGAGGCGGCCGACCGACAGAGCTGACCGATCGGTTAGTCGGCTGGGTCCGGTCGGTCGGCTAAATTTCCCGACCGAATGGTAACCATATTGAGTAGGATAGGGATACGTCAGTGACTAGGCACACTGAAACAAAAAAGTTTGAAATGCATCGCTAACCTGAAGATTGAAGCAGCACTCTTTG</canonical>
            <polymorphic>ACAACCCAATTTGAAGTCATTGGAAAAAGTTTGGACCTAGAATGTGCCAAGTTATCTCCAAAACACCCCCCGTGCCACAGTAGATGCGTTCCCGAAGAGACACATGGATCTTGCGAAGAACAAAGGCAATCGCTTCGAACAACTTTTATAATTTCATGTTTAGAAAGTATTCAGTAAGCTATTGTTAAATTTTCAAGTCTATTCGAGTATTTTCGGAGAAGTTACAGCACTTTGAATGTGTTACCATACTTTTGGGCCACCCTGTATGTTTCCATTTGCTGCCCATTTGAAAACATTTACCTAAAGAAATTTTTTTTTCTAATTTTTATTAGCATTGATAATCGAGTAAATGAAAAAATAATCGGGTTAAAATTGAAGCTTTCAAAGCAATAAAATGCAAAATTACATTATGGAAAATCTGTTTTTATGCAAGGTTATGAAAGTTGATGAAAAAGTGCATTTGAGCCATTGTTTTTTGGGGAGTAATTGTATTAGTAAARATAAAGGACTTGCGAGTATCTGAAATTAAAACTAGGGGTCGGGGGTTGAAAAGGCGAAGAGAAAGAAAGAAAAACGGAATCAGGGGGAAAAATCAAGATCCTTCCGAATTTACTTGCGGCAGCAGACGCAACGGACAAGGGAGATGACGAAGGAGGCGATGAAAATGACTCCGAAGAGAGCAAGAGTCACCCAGACCCAGGTCTGAAAATCATAAAGTTATGGTGGGATAGGATTACGGTAGAAAATAGCGTGCACACAGGTCTATTAGTAAACTAGCAGCTTTAAAATAACGCTTCCATTTCGGCCGGTCGAAACTTGGAGGCGGCCGACCGACAGAGCTGACCGATCGGTTAGTCGGCTGGGTCCGGTCGGTCGGCTAAATTTCCCGACCGAATGGTAACCATATTGAGTAGGATAGGGATACGTCAGTGACTAGGCACACTGAAACAAAAAAGTTTGAAATGCATCGCTAACCTGAAGATTGAAGCAGCACTCTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCATTGATAATCGAGTAAATGA</pcr_primer_p1>
		<pcr_primer_p2>GATTCCGTTTTTCTTTCTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGCATTGATAATCGAGTAAATGAAAAAATAATCGGGTTAAAATTGAAGCTTTCAAAGCAATAAAATGCAAAATTACATTATGGAAAATCTGTTTTTATGCAAGGTTATGAAAGTTGATGAAAAAGTGCATTTGAGCCATTGTTTTTTGGGGAGTAATTGTATTAGTAAAAATAAAGGACTTGCGAGTATCTGAAATTAAAACTAGGGGTCGGGGGTTGAAAAGGCGAAGAGAAAGAAAGAAAAACGGAATC</canonical_amplicon>
		<polymorphic_amplicon>AGCATTGATAATCGAGTAAATGAAAAAATAATCGGGTTAAAATTGAAGCTTTCAAAGCAATAAAATGCAAAATTACATTATGGAAAATCTGTTTTTATGCAAGGTTATGAAAGTTGATGAAAAAGTGCATTTGAGCCATTGTTTTTTGGGGAGTAATTGTATTAGTAAARATAAAGGACTTGCGAGTATCTGAAATTAAAACTAGGGGTCGGGGGTTGAAAAGGCGAAGAGAAAGAAAGAAAAACGGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32933</snp_id>
        <super_contig>c007700947.Contig1</super_contig>
        <contig_pos>7018</contig_pos>
        <strand></strand>
        <context>ataatttgaa[A/T]tttttaattt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTGATGAAGAATACTTGAACGCTGAAATTTGAAAATTGAATAATTTGAA</left_flank>
        <right_flank>TTTTTAATTTTTAATTTCCGCATTTCTGAATTTTTTAGTTTTTGAATTTC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGGTAGCTGATCAGACGACTTGTCGTACCTAAAGAAAACAAAATTCTTGAAAAAAATCAAAGAAGAAAACGAACACTTGCGGATCAAACAAAGCATCGTAGCTGGATTCCGACCCGTCTTTTGTGATATGGGCGAAACAAAATCTGCTGTTTGTCACCATCAATGCTACCTTGTTCAACAAATCAAATTCAATTTCAGTCATTCGATTCGCTGTTGCCGCATTGTAATCATTGACTTTTCGAACTTCCGAAGACGTCACTTCCAATTTGAACTTGCTTGCGTCTTGATGAACGAATGGAATTGAGCTTCTTTGATTGAAATATTTTTGTGGTGATCCTCCTCGTCCAGTTATCACTTCAAGTGTTTGAATCGGTGGATAGAATGTGAGCGACGCGTTTTTAACCATATCCGTCTCAATGTGGAATTTTCCAATTCCTAGGTGTTTCTTATTGATGAAGAATACTTGAACGCTGAAATTTGAAAATTGAATAATTTGAAATTTTTAATTTTTAATTTCCGCATTTCTGAATTTTTTAGTTTTTGAATTTCGGGATGTTTTTTTTTCAATTCTCGATCTTTCAAAATTCCAGAATTTTCGAATTTCGGAAGTTATGAACTTCCGAATGTCTGGAATTTTTTCAAACTTACGCTTGACAATGTTTTGGCGGCCAAATGACAATATTGAAATCAGCTGCACCAAGTTGCCAAACCGATGCCAGTGATGGGGGATGTTCGGAGCTGAAAAATTGATTTTTTTGAAAATTTAAAAAATAAATTGTTCACAAACATTGAGGTCTTGCGCATTTGATAAGTTCCATGAAGACTGCTAATTGGACCTGCCAACGACCAAGGAGACACTGTGTAGGGCTGAAAATTCAATTAGTTATTTTCAAAAATTCAAATTTCAAAATACCTAAAATTCAGGAATTCTAAAACTTCAAAACTCAAAAATTCAAAAATCGCTTCAAAAAAGTTTCAGCTCTTGAAAATTGCCAGAAA</canonical>
            <polymorphic>GCGGTAGCTGATCAGACGACTTGTCGTACCTAAAGAAAACAAAATTCTTGAAAAAAATCAAAGAAGAAAACGAACACTTGCGGATCAAACAAAGCATCGTAGCTGGATTCCGACCCGTCTTTTGTGATATGGGCGAAACAAAATCTGCTGTTTGTCACCATCAATGCTACCTTGTTCAACAAATCAAATTCAATTTCAGTCATTCGATTCGCTGTTGCCGCATTGTAATCATTGACTTTTCGAACTTCCGAAGACGTCACTTCCAATTTGAACTTGCTTGCGTCTTGATGAACGAATGGAATTGAGCTTCTTTGATTGAAATATTTTTGTGGTGATCCTCCTCGTCCAGTTATCACTTCAAGTGTTTGAATCGGTGGATAGAATGTGAGCGACGCGTTTTTAACCATATCCGTCTCAATGTGGAATTTTCCAATTCCTAGGTGTTTCTTATTGATGAAGAATACTTGAACGCTGAAATTTGAAAATTGAATAATTTGAAWTTTTTAATTTTTAATTTCCGCATTTCTGAATTTTTTAGTTTTTGAATTTCGGGATGTTTTTTTTTCAATTCTCGATCTTTCAAAATTCCAGAATTTTCGAATTTCGGAAGTTATGAACTTCCGAATGTCTGGAATTTTTTCAAACTTACGCTTGACAATGTTTTGGCGGCCAAATGACAATATTGAAATCAGCTGCACCAAGTTGCCAAACCGATGCCAGTGATGGGGGATGTTCGGAGCTGAAAAATTGATTTTTTTGAAAATTTAAAAAATAAATTGTTCACAAACATTGAGGTCTTGCGCATTTGATAAGTTCCATGAAGACTGCTAATTGGACCTGCCAACGACCAAGGAGACACTGTGTAGGGCTGAAAATTCAATTAGTTATTTTCAAAAATTCAAATTTCAAAATACCTAAAATTCAGGAATTCTAAAACTTCAAAACTCAAAAATTCAAAAATCGCTTCAAAAAAGTTTCAGCTCTTGAAAATTGCCAGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>237 144 129 112 52 50 42 39 33 30 24 23 22 17 16 8 8 8 6</canonical_bands>
                <polymorphic_bands>237 144 129 112 53 52 50 42 39 33 24 22 17 16 8 8 8 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>144 124 113 73 55 44 44 42 38 35 33 24 22 17 17 17 16 16 16 13 12 8 8 8 8 8 8 7 7 7 6 5 5</canonical_bands>
                <polymorphic_bands>144 124 113 73 55 44 44 42 38 35 33 24 22 17 17 17 16 16 16 14 13 12 8 8 8 8 8 8 7 6 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGATTGAAATATTTTTGTGGT</pcr_primer_p1>
		<pcr_primer_p2>ATCCCGAAATTCAAAAACTAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTGATTGAAATATTTTTGTGGTGATCCTCCTCGTCCAGTTATCACTTCAAGTGTTTGAATCGGTGGATAGAATGTGAGCGACGCGTTTTTAACCATATCCGTCTCAATGTGGAATTTTCCAATTCCTAGGTGTTTCTTATTGATGAAGAATACTTGAACGCTGAAATTTGAAAATTGAATAATTTGAAATTTTTAATTTTTAATTTCCGCATTTCTGAATTTTTTAGTTTTTGAATTTCGGGAT</canonical_amplicon>
		<polymorphic_amplicon>TTTGATTGAAATATTTTTGTGGTGATCCTCCTCGTCCAGTTATCACTTCAAGTGTTTGAATCGGTGGATAGAATGTGAGCGACGCGTTTTTAACCATATCCGTCTCAATGTGGAATTTTCCAATTCCTAGGTGTTTCTTATTGATGAAGAATACTTGAACGCTGAAATTTGAAAATTGAATAATTTGAAWTTTTTAATTTTTAATTTCCGCATTTCTGAATTTTTTAGTTTTTGAATTTCGGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32934</snp_id>
        <super_contig>c007700947.Contig1</super_contig>
        <contig_pos>7088</contig_pos>
        <strand>+</strand>
        <context>TTTTTTCAAT[A/T]YTCGATCTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCATTTCTGAATTTTTTAGTTTTTGAATTTCGGGATGTTTTTTTTTCAAT</left_flank>
        <right_flank>CTCGATCTTTCAAAATTCCAGAATTTTCGAATTTCGGAAGTTATGAACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAACACTTGCGGATCAAACAAAGCATCGTAGCTGGATTCCGACCCGTCTTTTGTGATATGGGCGAAACAAAATCTGCTGTTTGTCACCATCAATGCTACCTTGTTCAACAAATCAAATTCAATTTCAGTCATTCGATTCGCTGTTGCCGCATTGTAATCATTGACTTTTCGAACTTCCGAAGACGTCACTTCCAATTTGAACTTGCTTGCGTCTTGATGAACGAATGGAATTGAGCTTCTTTGATTGAAATATTTTTGTGGTGATCCTCCTCGTCCAGTTATCACTTCAAGTGTTTGAATCGGTGGATAGAATGTGAGCGACGCGTTTTTAACCATATCCGTCTCAATGTGGAATTTTCCAATTCCTAGGTGTTTCTTATTGATGAAGAATACTTGAACGCTGAAATTTGAAAATTGAATAATTTGAAATTTTTAATTTTTAATTTCCGCATTTCTGAATTTTTTAGTTTTTGAATTTCGGGATGTTTTTTTTTCAATTCTCGATCTTTCAAAATTCCAGAATTTTCGAATTTCGGAAGTTATGAACTTCCGAATGTCTGGAATTTTTTCAAACTTACGCTTGACAATGTTTTGGCGGCCAAATGACAATATTGAAATCAGCTGCACCAAGTTGCCAAACCGATGCCAGTGATGGGGGATGTTCGGAGCTGAAAAATTGATTTTTTTGAAAATTTAAAAAATAAATTGTTCACAAACATTGAGGTCTTGCGCATTTGATAAGTTCCATGAAGACTGCTAATTGGACCTGCCAACGACCAAGGAGACACTGTGTAGGGCTGAAAATTCAATTAGTTATTTTCAAAAATTCAAATTTCAAAATACCTAAAATTCAGGAATTCTAAAACTTCAAAACTCAAAAATTCAAAAATCGCTTCAAAAAAGTTTCAGCTCTTGAAAATTGCCAGAAACTTCCAGAAGGTTCTGGAATCTTTGTTTGAATTCCCGCCAAAATGTTTGAACCTCCGTTTTTCATTTTCA</canonical>
            <polymorphic>CGAACACTTGCGGATCAAACAAAGCATCGTAGCTGGATTCCGACCCGTCTTTTGTGATATGGGCGAAACAAAATCTGCTGTTTGTCACCATCAATGCTACCTTGTTCAACAAATCAAATTCAATTTCAGTCATTCGATTCGCTGTTGCCGCATTGTAATCATTGACTTTTCGAACTTCCGAAGACGTCACTTCCAATTTGAACTTGCTTGCGTCTTGATGAACGAATGGAATTGAGCTTCTTTGATTGAAATATTTTTGTGGTGATCCTCCTCGTCCAGTTATCACTTCAAGTGTTTGAATCGGTGGATAGAATGTGAGCGACGCGTTTTTAACCATATCCGTCTCAATGTGGAATTTTCCAATTCCTAGGTGTTTCTTATTGATGAAGAATACTTGAACGCTGAAATTTGAAAATTGAATAATTTGAAATTTTTAATTTTTAATTTCCGCATTTCTGAATTTTTTAGTTTTTGAATTTCGGGATGTTTTTTTTTCAATWCTCGATCTTTCAAAATTCCAGAATTTTCGAATTTCGGAAGTTATGAACTTCCGAATGTCTGGAATTTTTTCAAACTTACGCTTGACAATGTTTTGGCGGCCAAATGACAATATTGAAATCAGCTGCACCAAGTTGCCAAACCGATGCCAGTGATGGGGGATGTTCGGAGCTGAAAAATTGATTTTTTTGAAAATTTAAAAAATAAATTGTTCACAAACATTGAGGTCTTGCGCATTTGATAAGTTCCATGAAGACTGCTAATTGGACCTGCCAACGACCAAGGAGACACTGTGTAGGGCTGAAAATTCAATTAGTTATTTTCAAAAATTCAAATTTCAAAATACCTAAAATTCAGGAATTCTAAAACTTCAAAACTCAAAAATTCAAAAATCGCTTCAAAAAAGTTTCAGCTCTTGAAAATTGCCAGAAACTTCCAGAAGGTTCTGGAATCTTTGTTTGAATTCCCGCCAAAATGTTTGAACCTCCGTTTTTCATTTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>294 266 214 60 56 41 21 21 17 10</canonical_bands>
                <polymorphic_bands>294 266 214 60 56 41 38 21 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>124 116 113 73 55 44 44 41 41 38 35 33 24 22 17 17 17 16 16 16 13 8 8 8 8 8 8 7 7 7 6 5 5</canonical_bands>
                <polymorphic_bands>124 116 113 73 55 44 44 41 41 39 38 35 33 24 17 17 16 16 16 13 8 8 8 8 8 8 7 7 7 6 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAATTCCTAGGTGTTTCTTATT</pcr_primer_p1>
		<pcr_primer_p2>AAAACATTGTCAAGCGTAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>CCAATTCCTAGGTGTTTCTTATTGATGAAGAATACTTGAACGCTGAAATTTGAAAATTGAATAATTTGAAATTTTTAATTTTTAATTTCCGCATTTCTGAATTTTTTAGTTTTTGAATTTCGGGATGTTTTTTTTTCAATTCTCGATCTTTCAAAATTCCAGAATTTTCGAATTTCGGAAGTTATGAACTTCCGAATGTCTGGAATTTTTTCAAACTTACGCTTGACAATGTTTT</canonical_amplicon>
		<polymorphic_amplicon>CCAATTCCTAGGTGTTTCTTATTGATGAAGAATACTTGAACGCTGAAATTTGAAAATTGAATAATTTGAAATTTTTAATTTTTAATTTCCGCATTTCTGAATTTTTTAGTTTTTGAATTTCGGGATGTTTTTTTTTCAATWCTCGATCTTTCAAAATTCCAGAATTTTCGAATTTCGGAAGTTATGAACTTCCGAATGTCTGGAATTTTTTCAAACTTACGCTTGACAATGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32935</snp_id>
        <super_contig>c007700947.Contig1</super_contig>
        <contig_pos>7089</contig_pos>
        <strand>+</strand>
        <context>TTTTTCAATW[C/T]TCGATCTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATTTCTGAATTTTTTAGTTTTTGAATTTCGGGATGTTTTTTTTTCAATT</left_flank>
        <right_flank>TCGATCTTTCAAAATTCCAGAATTTTCGAATTTCGGAAGTTATGAACTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACACTTGCGGATCAAACAAAGCATCGTAGCTGGATTCCGACCCGTCTTTTGTGATATGGGCGAAACAAAATCTGCTGTTTGTCACCATCAATGCTACCTTGTTCAACAAATCAAATTCAATTTCAGTCATTCGATTCGCTGTTGCCGCATTGTAATCATTGACTTTTCGAACTTCCGAAGACGTCACTTCCAATTTGAACTTGCTTGCGTCTTGATGAACGAATGGAATTGAGCTTCTTTGATTGAAATATTTTTGTGGTGATCCTCCTCGTCCAGTTATCACTTCAAGTGTTTGAATCGGTGGATAGAATGTGAGCGACGCGTTTTTAACCATATCCGTCTCAATGTGGAATTTTCCAATTCCTAGGTGTTTCTTATTGATGAAGAATACTTGAACGCTGAAATTTGAAAATTGAATAATTTGAAATTTTTAATTTTTAATTTCCGCATTTCTGAATTTTTTAGTTTTTGAATTTCGGGATGTTTTTTTTTCAATTCTCGATCTTTCAAAATTCCAGAATTTTCGAATTTCGGAAGTTATGAACTTCCGAATGTCTGGAATTTTTTCAAACTTACGCTTGACAATGTTTTGGCGGCCAAATGACAATATTGAAATCAGCTGCACCAAGTTGCCAAACCGATGCCAGTGATGGGGGATGTTCGGAGCTGAAAAATTGATTTTTTTGAAAATTTAAAAAATAAATTGTTCACAAACATTGAGGTCTTGCGCATTTGATAAGTTCCATGAAGACTGCTAATTGGACCTGCCAACGACCAAGGAGACACTGTGTAGGGCTGAAAATTCAATTAGTTATTTTCAAAAATTCAAATTTCAAAATACCTAAAATTCAGGAATTCTAAAACTTCAAAACTCAAAAATTCAAAAATCGCTTCAAAAAAGTTTCAGCTCTTGAAAATTGCCAGAAACTTCCAGAAGGTTCTGGAATCTTTGTTTGAATTCCCGCCAAAATGTTTGAACCTCCGTTTTTCATTTTCAA</canonical>
            <polymorphic>GAACACTTGCGGATCAAACAAAGCATCGTAGCTGGATTCCGACCCGTCTTTTGTGATATGGGCGAAACAAAATCTGCTGTTTGTCACCATCAATGCTACCTTGTTCAACAAATCAAATTCAATTTCAGTCATTCGATTCGCTGTTGCCGCATTGTAATCATTGACTTTTCGAACTTCCGAAGACGTCACTTCCAATTTGAACTTGCTTGCGTCTTGATGAACGAATGGAATTGAGCTTCTTTGATTGAAATATTTTTGTGGTGATCCTCCTCGTCCAGTTATCACTTCAAGTGTTTGAATCGGTGGATAGAATGTGAGCGACGCGTTTTTAACCATATCCGTCTCAATGTGGAATTTTCCAATTCCTAGGTGTTTCTTATTGATGAAGAATACTTGAACGCTGAAATTTGAAAATTGAATAATTTGAAATTTTTAATTTTTAATTTCCGCATTTCTGAATTTTTTAGTTTTTGAATTTCGGGATGTTTTTTTTTCAATTYTCGATCTTTCAAAATTCCAGAATTTTCGAATTTCGGAAGTTATGAACTTCCGAATGTCTGGAATTTTTTCAAACTTACGCTTGACAATGTTTTGGCGGCCAAATGACAATATTGAAATCAGCTGCACCAAGTTGCCAAACCGATGCCAGTGATGGGGGATGTTCGGAGCTGAAAAATTGATTTTTTTGAAAATTTAAAAAATAAATTGTTCACAAACATTGAGGTCTTGCGCATTTGATAAGTTCCATGAAGACTGCTAATTGGACCTGCCAACGACCAAGGAGACACTGTGTAGGGCTGAAAATTCAATTAGTTATTTTCAAAAATTCAAATTTCAAAATACCTAAAATTCAGGAATTCTAAAACTTCAAAACTCAAAAATTCAAAAATCGCTTCAAAAAAGTTTCAGCTCTTGAAAATTGCCAGAAACTTCCAGAAGGTTCTGGAATCTTTGTTTGAATTCCCGCCAAAATGTTTGAACCTCCGTTTTTCATTTTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>294 266 213 60 57 41 21 21 17 10</canonical_bands>
                <polymorphic_bands>294 266 213 60 57 41 38 21 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAATTCCTAGGTGTTTCTTATT</pcr_primer_p1>
		<pcr_primer_p2>AAAACATTGTCAAGCGTAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>CCAATTCCTAGGTGTTTCTTATTGATGAAGAATACTTGAACGCTGAAATTTGAAAATTGAATAATTTGAAATTTTTAATTTTTAATTTCCGCATTTCTGAATTTTTTAGTTTTTGAATTTCGGGATGTTTTTTTTTCAATTCTCGATCTTTCAAAATTCCAGAATTTTCGAATTTCGGAAGTTATGAACTTCCGAATGTCTGGAATTTTTTCAAACTTACGCTTGACAATGTTTT</canonical_amplicon>
		<polymorphic_amplicon>CCAATTCCTAGGTGTTTCTTATTGATGAAGAATACTTGAACGCTGAAATTTGAAAATTGAATAATTTGAAATTTTTAATTTTTAATTTCCGCATTTCTGAATTTTTTAGTTTTTGAATTTCGGGATGTTTTTTTTTCAATTYTCGATCTTTCAAAATTCCAGAATTTTCGAATTTCGGAAGTTATGAACTTCCGAATGTCTGGAATTTTTTCAAACTTACGCTTGACAATGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32936</snp_id>
        <super_contig>c007700947.Contig1</super_contig>
        <contig_pos>7136</contig_pos>
        <strand>+</strand>
        <context>AAGTTATGAA[C/T]TTCCGAATGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCTCGATCTTTCAAAATTCCAGAATTTTCGAATTTCGGAAGTTATGAA</left_flank>
        <right_flank>TTCCGAATGTCTGGAATTTTTTCAAACTTACGCTTGACAATGTTTTGGCG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTGTGATATGGGCGAAACAAAATCTGCTGTTTGTCACCATCAATGCTACCTTGTTCAACAAATCAAATTCAATTTCAGTCATTCGATTCGCTGTTGCCGCATTGTAATCATTGACTTTTCGAACTTCCGAAGACGTCACTTCCAATTTGAACTTGCTTGCGTCTTGATGAACGAATGGAATTGAGCTTCTTTGATTGAAATATTTTTGTGGTGATCCTCCTCGTCCAGTTATCACTTCAAGTGTTTGAATCGGTGGATAGAATGTGAGCGACGCGTTTTTAACCATATCCGTCTCAATGTGGAATTTTCCAATTCCTAGGTGTTTCTTATTGATGAAGAATACTTGAACGCTGAAATTTGAAAATTGAATAATTTGAAATTTTTAATTTTTAATTTCCGCATTTCTGAATTTTTTAGTTTTTGAATTTCGGGATGTTTTTTTTTCAATTCTCGATCTTTCAAAATTCCAGAATTTTCGAATTTCGGAAGTTATGAACTTCCGAATGTCTGGAATTTTTTCAAACTTACGCTTGACAATGTTTTGGCGGCCAAATGACAATATTGAAATCAGCTGCACCAAGTTGCCAAACCGATGCCAGTGATGGGGGATGTTCGGAGCTGAAAAATTGATTTTTTTGAAAATTTAAAAAATAAATTGTTCACAAACATTGAGGTCTTGCGCATTTGATAAGTTCCATGAAGACTGCTAATTGGACCTGCCAACGACCAAGGAGACACTGTGTAGGGCTGAAAATTCAATTAGTTATTTTCAAAAATTCAAATTTCAAAATACCTAAAATTCAGGAATTCTAAAACTTCAAAACTCAAAAATTCAAAAATCGCTTCAAAAAAGTTTCAGCTCTTGAAAATTGCCAGAAACTTCCAGAAGGTTCTGGAATCTTTGTTTGAATTCCCGCCAAAATGTTTGAACCTCCGTTTTTCATTTTCAACTCTTTTCTAGAGGTTACCAATTTTTAGATTCGGTGACTATTGAATT</canonical>
            <polymorphic>CTTTTGTGATATGGGCGAAACAAAATCTGCTGTTTGTCACCATCAATGCTACCTTGTTCAACAAATCAAATTCAATTTCAGTCATTCGATTCGCTGTTGCCGCATTGTAATCATTGACTTTTCGAACTTCCGAAGACGTCACTTCCAATTTGAACTTGCTTGCGTCTTGATGAACGAATGGAATTGAGCTTCTTTGATTGAAATATTTTTGTGGTGATCCTCCTCGTCCAGTTATCACTTCAAGTGTTTGAATCGGTGGATAGAATGTGAGCGACGCGTTTTTAACCATATCCGTCTCAATGTGGAATTTTCCAATTCCTAGGTGTTTCTTATTGATGAAGAATACTTGAACGCTGAAATTTGAAAATTGAATAATTTGAAATTTTTAATTTTTAATTTCCGCATTTCTGAATTTTTTAGTTTTTGAATTTCGGGATGTTTTTTTTTCAATTCTCGATCTTTCAAAATTCCAGAATTTTCGAATTTCGGAAGTTATGAAYTTCCGAATGTCTGGAATTTTTTCAAACTTACGCTTGACAATGTTTTGGCGGCCAAATGACAATATTGAAATCAGCTGCACCAAGTTGCCAAACCGATGCCAGTGATGGGGGATGTTCGGAGCTGAAAAATTGATTTTTTTGAAAATTTAAAAAATAAATTGTTCACAAACATTGAGGTCTTGCGCATTTGATAAGTTCCATGAAGACTGCTAATTGGACCTGCCAACGACCAAGGAGACACTGTGTAGGGCTGAAAATTCAATTAGTTATTTTCAAAAATTCAAATTTCAAAATACCTAAAATTCAGGAATTCTAAAACTTCAAAACTCAAAAATTCAAAAATCGCTTCAAAAAAGTTTCAGCTCTTGAAAATTGCCAGAAACTTCCAGAAGGTTCTGGAATCTTTGTTTGAATTCCCGCCAAAATGTTTGAACCTCCGTTTTTCATTTTCAACTCTTTTCTAGAGGTTACCAATTTTTAGATTCGGTGACTATTGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAATACTTGAACGCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>CAAGACCTCAATGTTTGTGAA</pcr_primer_p2>
		<pcr_amplicon_size>344</pcr_amplicon_size>
		<canonical_amplicon>AAGAATACTTGAACGCTGAAATTTGAAAATTGAATAATTTGAAATTTTTAATTTTTAATTTCCGCATTTCTGAATTTTTTAGTTTTTGAATTTCGGGATGTTTTTTTTTCAATTCTCGATCTTTCAAAATTCCAGAATTTTCGAATTTCGGAAGTTATGAACTTCCGAATGTCTGGAATTTTTTCAAACTTACGCTTGACAATGTTTTGGCGGCCAAATGACAATATTGAAATCAGCTGCACCAAGTTGCCAAACCGATGCCAGTGATGGGGGATGTTCGGAGCTGAAAAATTGATTTTTTTGAAAATTTAAAAAATAAATTGTTCACAAACATTGAGGTCTTG</canonical_amplicon>
		<polymorphic_amplicon>AAGAATACTTGAACGCTGAAATTTGAAAATTGAATAATTTGAAATTTTTAATTTTTAATTTCCGCATTTCTGAATTTTTTAGTTTTTGAATTTCGGGATGTTTTTTTTTCAATTCTCGATCTTTCAAAATTCCAGAATTTTCGAATTTCGGAAGTTATGAAYTTCCGAATGTCTGGAATTTTTTCAAACTTACGCTTGACAATGTTTTGGCGGCCAAATGACAATATTGAAATCAGCTGCACCAAGTTGCCAAACCGATGCCAGTGATGGGGGATGTTCGGAGCTGAAAAATTGATTTTTTTGAAAATTTAAAAAATAAATTGTTCACAAACATTGAGGTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32937</snp_id>
        <super_contig>c007700947.Contig1</super_contig>
        <contig_pos>7291</contig_pos>
        <strand></strand>
        <context>atttaaaaaa[T/C]aaattGTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATGGGGGATGTTCGGAGCTGAAAAATTGATTTTTTTGAAAATTTAAAAAA</left_flank>
        <right_flank>AAATTGTTCACAAACATTGAGGTCTTGCGCATTTGATAAGTTCCATGAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCTTGCGTCTTGATGAACGAATGGAATTGAGCTTCTTTGATTGAAATATTTTTGTGGTGATCCTCCTCGTCCAGTTATCACTTCAAGTGTTTGAATCGGTGGATAGAATGTGAGCGACGCGTTTTTAACCATATCCGTCTCAATGTGGAATTTTCCAATTCCTAGGTGTTTCTTATTGATGAAGAATACTTGAACGCTGAAATTTGAAAATTGAATAATTTGAAATTTTTAATTTTTAATTTCCGCATTTCTGAATTTTTTAGTTTTTGAATTTCGGGATGTTTTTTTTTCAATTCTCGATCTTTCAAAATTCCAGAATTTTCGAATTTCGGAAGTTATGAACTTCCGAATGTCTGGAATTTTTTCAAACTTACGCTTGACAATGTTTTGGCGGCCAAATGACAATATTGAAATCAGCTGCACCAAGTTGCCAAACCGATGCCAGTGATGGGGGATGTTCGGAGCTGAAAAATTGATTTTTTTGAAAATTTAAAAAATAAATTGTTCACAAACATTGAGGTCTTGCGCATTTGATAAGTTCCATGAAGACTGCTAATTGGACCTGCCAACGACCAAGGAGACACTGTGTAGGGCTGAAAATTCAATTAGTTATTTTCAAAAATTCAAATTTCAAAATACCTAAAATTCAGGAATTCTAAAACTTCAAAACTCAAAAATTCAAAAATCGCTTCAAAAAAGTTTCAGCTCTTGAAAATTGCCAGAAACTTCCAGAAGGTTCTGGAATCTTTGTTTGAATTCCCGCCAAAATGTTTGAACCTCCGTTTTTCATTTTCAACTCTTTTCTAGAGGTTACCAATTTTTAGATTCGGTGACTATTGAATTTTTGAGTTTCCGAATTTCTGAATTTTCGAATTTCGGTTTCCCTGCGTTTTGAACTCTTACGGTGAGATTACTGTAGATTTTTTTGCATTCTTTTATCTGTTTAATTTGCTAAAGGATTTCCAATTCTTCCAAGAAGCGCAGACTTGCAAAAAATG</canonical>
            <polymorphic>TTGCTTGCGTCTTGATGAACGAATGGAATTGAGCTTCTTTGATTGAAATATTTTTGTGGTGATCCTCCTCGTCCAGTTATCACTTCAAGTGTTTGAATCGGTGGATAGAATGTGAGCGACGCGTTTTTAACCATATCCGTCTCAATGTGGAATTTTCCAATTCCTAGGTGTTTCTTATTGATGAAGAATACTTGAACGCTGAAATTTGAAAATTGAATAATTTGAAATTTTTAATTTTTAATTTCCGCATTTCTGAATTTTTTAGTTTTTGAATTTCGGGATGTTTTTTTTTCAATTCTCGATCTTTCAAAATTCCAGAATTTTCGAATTTCGGAAGTTATGAACTTCCGAATGTCTGGAATTTTTTCAAACTTACGCTTGACAATGTTTTGGCGGCCAAATGACAATATTGAAATCAGCTGCACCAAGTTGCCAAACCGATGCCAGTGATGGGGGATGTTCGGAGCTGAAAAATTGATTTTTTTGAAAATTTAAAAAAYAAATTGTTCACAAACATTGAGGTCTTGCGCATTTGATAAGTTCCATGAAGACTGCTAATTGGACCTGCCAACGACCAAGGAGACACTGTGTAGGGCTGAAAATTCAATTAGTTATTTTCAAAAATTCAAATTTCAAAATACCTAAAATTCAGGAATTCTAAAACTTCAAAACTCAAAAATTCAAAAATCGCTTCAAAAAAGTTTCAGCTCTTGAAAATTGCCAGAAACTTCCAGAAGGTTCTGGAATCTTTGTTTGAATTCCCGCCAAAATGTTTGAACCTCCGTTTTTCATTTTCAACTCTTTTCTAGAGGTTACCAATTTTTAGATTCGGTGACTATTGAATTTTTGAGTTTCCGAATTTCTGAATTTTCGAATTTCGGTTTCCCTGCGTTTTGAACTCTTACGGTGAGATTACTGTAGATTTTTTTGCATTCTTTTATCTGTTTAATTTGCTAAAGGATTTCCAATTCTTCCAAGAAGCGCAGACTTGCAAAAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTTACGCTTGACAATGTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTAATTGAATTTTCAGCCCTAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAACTTACGCTTGACAATGTTTTGGCGGCCAAATGACAATATTGAAATCAGCTGCACCAAGTTGCCAAACCGATGCCAGTGATGGGGGATGTTCGGAGCTGAAAAATTGATTTTTTTGAAAATTTAAAAAATAAATTGTTCACAAACATTGAGGTCTTGCGCATTTGATAAGTTCCATGAAGACTGCTAATTGGACCTGCCAACGACCAAGGAGACACTGTGTAGGGCTGAAAATTCAATTAGT</canonical_amplicon>
		<polymorphic_amplicon>AAACTTACGCTTGACAATGTTTTGGCGGCCAAATGACAATATTGAAATCAGCTGCACCAAGTTGCCAAACCGATGCCAGTGATGGGGGATGTTCGGAGCTGAAAAATTGATTTTTTTGAAAATTTAAAAAAYAAATTGTTCACAAACATTGAGGTCTTGCGCATTTGATAAGTTCCATGAAGACTGCTAATTGGACCTGCCAACGACCAAGGAGACACTGTGTAGGGCTGAAAATTCAATTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32938</snp_id>
        <super_contig>c007700947.Contig1</super_contig>
        <contig_pos>23230</contig_pos>
        <strand></strand>
        <context>tgaagccaca[G/A]taatctcaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAATCCAAAAGCTACAATAATCCAAAAGCTACAATAATCCTGAAGCCACA</left_flank>
        <right_flank>TAATCTCAAAGCTACAGTAATCCGAAAGCTATAGTAATCCAAAAGCTATA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATATCTCCGAGTTCTGTCTTACCGTAGTCCAAACATCTCTATGAGAAGTTGACAACTTGCTAACGCATCCAGAACACTCATCCGATGAGTTGTCCTTAACAAATTGGAGCATCTGAAATTATTATTTTTTTGATTTTCAAAATCAAAAAAGTCAAATCACATTAAAAAGCTCATCGGACGTCTTCAAAGTGTCGTCGTCTTGATTCAGAATATTGATTTTCCAGAAGCACCCATTACAACAAACGATGACGTGGCATGGGGTGTCGCCTTCTTCTTCTGGAAGAATCTACCATAATATCAAAGTTACAGTAATCCCAAAGTTACAGCAACTCCAAAGCTACAGTAATCTCAAAACTACAGTGCTCCTAAAGCTATAGTACTCCTAAAGCTACAATAATTCAAAAGCTATAGTGATCCAAAAGCTACAGTACTCCAAAAGCTACAATAATCCAAAAGCTACAATAATCCAAAAGCTACAATAATCCTGAAGCCACAGTAATCTCAAAGCTACAGTAATCCGAAAGCTATAGTAATCCAAAAGCTATAGTAAGCTTGAAGCTGCAGTAATTGACTGCAGTAACCTCAGAGCTACAGTAATCAATTACAAAGTCATCGCTCACCTTCAGTAACCGACTACAATAATCTAACAGTTACAGTAATCTCAAACCTACAGTATTCTCAGAAAGTCCAATGTCCAATTTTTGTATTTTCAAAAAATCAATAAAAATTTTACAACTTCTTTTATCAATATGTCATATTTTCACACCTCGCGTCCTTATCAGAGACTAATAAAAACTAATGGGGTATTGGACTTTAAACAGGCTTTGACCACCTGCACATCAAACTTTTCTTTATTGTACAAAACTACAGTAATCCCAAACTCACTTGTCTTGAAATATCGATCAATTGTGTCCCGTGGCATGTGAGGTGTACGGTTGGAAGAAAATAGATGATGGAATTGATCCATGTCCCAAGTGACGCCTCGAGATGATGTTA</canonical>
            <polymorphic>AAAAATATCTCCGAGTTCTGTCTTACCGTAGTCCAAACATCTCTATGAGAAGTTGACAACTTGCTAACGCATCCAGAACACTCATCCGATGAGTTGTCCTTAACAAATTGGAGCATCTGAAATTATTATTTTTTTGATTTTCAAAATCAAAAAAGTCAAATCACATTAAAAAGCTCATCGGACGTCTTCAAAGTGTCGTCGTCTTGATTCAGAATATTGATTTTCCAGAAGCACCCATTACAACAAACGATGACGTGGCATGGGGTGTCGCCTTCTTCTTCTGGAAGAATCTACCATAATATCAAAGTTACAGTAATCCCAAAGTTACAGCAACTCCAAAGCTACAGTAATCTCAAAACTACAGTGCTCCTAAAGCTATAGTACTCCTAAAGCTACAATAATTCAAAAGCTATAGTGATCCAAAAGCTACAGTACTCCAAAAGCTACAATAATCCAAAAGCTACAATAATCCAAAAGCTACAATAATCCTGAAGCCACARTAATCTCAAAGCTACAGTAATCCGAAAGCTATAGTAATCCAAAAGCTATAGTAAGCTTGAAGCTGCAGTAATTGACTGCAGTAACCTCAGAGCTACAGTAATCAATTACAAAGTCATCGCTCACCTTCAGTAACCGACTACAATAATCTAACAGTTACAGTAATCTCAAACCTACAGTATTCTCAGAAAGTCCAATGTCCAATTTTTGTATTTTCAAAAAATCAATAAAAATTTTACAACTTCTTTTATCAATATGTCATATTTTCACACCTCGCGTCCTTATCAGAGACTAATAAAAACTAATGGGGTATTGGACTTTAAACAGGCTTTGACCACCTGCACATCAAACTTTTCTTTATTGTACAAAACTACAGTAATCCCAAACTCACTTGTCTTGAAATATCGATCAATTGTGTCCCGTGGCATGTGAGGTGTACGGTTGGAAGAAAATAGATGATGGAATTGATCCATGTCCCAAGTGACGCCTCGAGATGATGTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>285 197 81 68 68 65 62 56 34 27 17 17 17 6</canonical_bands>
                <polymorphic_bands>285 197 85 81 68 65 62 56 34 27 17 17 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACCCATTACAACAAACGAT</pcr_primer_p1>
		<pcr_primer_p2>TACTGTAGCTCTGAGGTTACTGC</pcr_primer_p2>
		<pcr_amplicon_size>369</pcr_amplicon_size>
		<canonical_amplicon>CACCCATTACAACAAACGATGACGTGGCATGGGGTGTCGCCTTCTTCTTCTGGAAGAATCTACCATAATATCAAAGTTACAGTAATCCCAAAGTTACAGCAACTCCAAAGCTACAGTAATCTCAAAACTACAGTGCTCCTAAAGCTATAGTACTCCTAAAGCTACAATAATTCAAAAGCTATAGTGATCCAAAAGCTACAGTACTCCAAAAGCTACAATAATCCAAAAGCTACAATAATCCAAAAGCTACAATAATCCTGAAGCCACAGTAATCTCAAAGCTACAGTAATCCGAAAGCTATAGTAATCCAAAAGCTATAGTAAGCTTGAAGCTGCAGTAATTGACTGCAGTAACCTCAGAGCTACAGTA</canonical_amplicon>
		<polymorphic_amplicon>CACCCATTACAACAAACGATGACGTGGCATGGGGTGTCGCCTTCTTCTTCTGGAAGAATCTACCATAATATCAAAGTTACAGTAATCCCAAAGTTACAGCAACTCCAAAGCTACAGTAATCTCAAAACTACAGTGCTCCTAAAGCTATAGTACTCCTAAAGCTACAATAATTCAAAAGCTATAGTGATCCAAAAGCTACAGTACTCCAAAAGCTACAATAATCCAAAAGCTACAATAATCCAAAAGCTACAATAATCCTGAAGCCACARTAATCTCAAAGCTACAGTAATCCGAAAGCTATAGTAATCCAAAAGCTATAGTAAGCTTGAAGCTGCAGTAATTGACTGCAGTAACCTCAGAGCTACAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32939</snp_id>
        <super_contig>c007700947.Contig1</super_contig>
        <contig_pos>23295</contig_pos>
        <strand>+</strand>
        <context>GCTTGAAGCT[A/G]CAGTAATTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGTAATCCGAAAGCTATAGTAATCCAAAAGCTATAGTAAGCTTGAAGCT</left_flank>
        <right_flank>CAGTAATTGACTGCAGTAACCTCAGAGCTACAGTAATCAATTACAAAGTC</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACGCATCCAGAACACTCATCCGATGAGTTGTCCTTAACAAATTGGAGCATCTGAAATTATTATTTTTTTGATTTTCAAAATCAAAAAAGTCAAATCACATTAAAAAGCTCATCGGACGTCTTCAAAGTGTCGTCGTCTTGATTCAGAATATTGATTTTCCAGAAGCACCCATTACAACAAACGATGACGTGGCATGGGGTGTCGCCTTCTTCTTCTGGAAGAATCTACCATAATATCAAAGTTACAGTAATCCCAAAGTTACAGCAACTCCAAAGCTACAGTAATCTCAAAACTACAGTGCTCCTAAAGCTATAGTACTCCTAAAGCTACAATAATTCAAAAGCTATAGTGATCCAAAAGCTACAGTACTCCAAAAGCTACAATAATCCAAAAGCTACAATAATCCAAAAGCTACAATAATCCTGAAGCCACAGTAATCTCAAAGCTACAGTAATCCGAAAGCTATAGTAATCCAAAAGCTATAGTAAGCTTGAAGCTGCAGTAATTGACTGCAGTAACCTCAGAGCTACAGTAATCAATTACAAAGTCATCGCTCACCTTCAGTAACCGACTACAATAATCTAACAGTTACAGTAATCTCAAACCTACAGTATTCTCAGAAAGTCCAATGTCCAATTTTTGTATTTTCAAAAAATCAATAAAAATTTTACAACTTCTTTTATCAATATGTCATATTTTCACACCTCGCGTCCTTATCAGAGACTAATAAAAACTAATGGGGTATTGGACTTTAAACAGGCTTTGACCACCTGCACATCAAACTTTTCTTTATTGTACAAAACTACAGTAATCCCAAACTCACTTGTCTTGAAATATCGATCAATTGTGTCCCGTGGCATGTGAGGTGTACGGTTGGAAGAAAATAGATGATGGAATTGATCCATGTCCCAAGTGACGCCTCGAGATGATGTTACTGGCCATTTTCCACTGAAAATGGGACTTTTAGTAATGTGGCCTAGAAATACAAAAGTTTGGACT</canonical>
            <polymorphic>AACGCATCCAGAACACTCATCCGATGAGTTGTCCTTAACAAATTGGAGCATCTGAAATTATTATTTTTTTGATTTTCAAAATCAAAAAAGTCAAATCACATTAAAAAGCTCATCGGACGTCTTCAAAGTGTCGTCGTCTTGATTCAGAATATTGATTTTCCAGAAGCACCCATTACAACAAACGATGACGTGGCATGGGGTGTCGCCTTCTTCTTCTGGAAGAATCTACCATAATATCAAAGTTACAGTAATCCCAAAGTTACAGCAACTCCAAAGCTACAGTAATCTCAAAACTACAGTGCTCCTAAAGCTATAGTACTCCTAAAGCTACAATAATTCAAAAGCTATAGTGATCCAAAAGCTACAGTACTCCAAAAGCTACAATAATCCAAAAGCTACAATAATCCAAAAGCTACAATAATCCTGAAGCCACAGTAATCTCAAAGCTACAGTAATCCGAAAGCTATAGTAATCCAAAAGCTATAGTAAGCTTGAAGCTRCAGTAATTGACTGCAGTAACCTCAGAGCTACAGTAATCAATTACAAAGTCATCGCTCACCTTCAGTAACCGACTACAATAATCTAACAGTTACAGTAATCTCAAACCTACAGTATTCTCAGAAAGTCCAATGTCCAATTTTTGTATTTTCAAAAAATCAATAAAAATTTTACAACTTCTTTTATCAATATGTCATATTTTCACACCTCGCGTCCTTATCAGAGACTAATAAAAACTAATGGGGTATTGGACTTTAAACAGGCTTTGACCACCTGCACATCAAACTTTTCTTTATTGTACAAAACTACAGTAATCCCAAACTCACTTGTCTTGAAATATCGATCAATTGTGTCCCGTGGCATGTGAGGTGTACGGTTGGAAGAAAATAGATGATGGAATTGATCCATGTCCCAAGTGACGCCTCGAGATGATGTTACTGGCCATTTTCCACTGAAAATGGGACTTTTAGTAATGTGGCCTAGAAATACAAAAGTTTGGACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>277 197 196 85 79 34 17 17 17 17 17 17 17 13</canonical_bands>
                <polymorphic_bands>277 197 196 85 79 34 30 17 17 17 17 17 17</polymorphic_bands>
            </assay>
            <assay>
                <site>CTGCAG</site>
                <isoschizomers>
                    <enzyme>BloHII</enzyme>
                    <enzyme>BstMAI</enzyme>
                    <enzyme>PstI</enzyme>
                </isoschizomers>
                <canonical_bands>502 485 13</canonical_bands>
                <polymorphic_bands>515 485</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 261 226 13</canonical_bands>
                <polymorphic_bands>513 261 226</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGCACCCATTACAACAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGCGATGACTTTGTAATTGA</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>GAAGCACCCATTACAACAAACGATGACGTGGCATGGGGTGTCGCCTTCTTCTTCTGGAAGAATCTACCATAATATCAAAGTTACAGTAATCCCAAAGTTACAGCAACTCCAAAGCTACAGTAATCTCAAAACTACAGTGCTCCTAAAGCTATAGTACTCCTAAAGCTACAATAATTCAAAAGCTATAGTGATCCAAAAGCTACAGTACTCCAAAAGCTACAATAATCCAAAAGCTACAATAATCCAAAAGCTACAATAATCCTGAAGCCACAGTAATCTCAAAGCTACAGTAATCCGAAAGCTATAGTAATCCAAAAGCTATAGTAAGCTTGAAGCTGCAGTAATTGACTGCAGTAACCTCAGAGCTACAGTAATCAATTACAAAGTCATCGCTC</canonical_amplicon>
		<polymorphic_amplicon>GAAGCACCCATTACAACAAACGATGACGTGGCATGGGGTGTCGCCTTCTTCTTCTGGAAGAATCTACCATAATATCAAAGTTACAGTAATCCCAAAGTTACAGCAACTCCAAAGCTACAGTAATCTCAAAACTACAGTGCTCCTAAAGCTATAGTACTCCTAAAGCTACAATAATTCAAAAGCTATAGTGATCCAAAAGCTACAGTACTCCAAAAGCTACAATAATCCAAAAGCTACAATAATCCAAAAGCTACAATAATCCTGAAGCCACAGTAATCTCAAAGCTACAGTAATCCGAAAGCTATAGTAATCCAAAAGCTATAGTAAGCTTGAAGCTRCAGTAATTGACTGCAGTAACCTCAGAGCTACAGTAATCAATTACAAAGTCATCGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32940</snp_id>
        <super_contig>c007700947.Contig1</super_contig>
        <contig_pos>23416</contig_pos>
        <strand>+</strand>
        <context>AGTATTCTCA[C/G]AAAGYCCAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GACTACAATAATCTAACAGTTACAGTAATCTCAAACCTACAGTATTCTCA</left_flank>
        <right_flank>AAAGTCCAATGTCCAATTTTTGTATTTTCAAAAAATCAATAAAAATTTTA</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAAAGTGTCGTCGTCTTGATTCAGAATATTGATTTTCCAGAAGCACCCATTACAACAAACGATGACGTGGCATGGGGTGTCGCCTTCTTCTTCTGGAAGAATCTACCATAATATCAAAGTTACAGTAATCCCAAAGTTACAGCAACTCCAAAGCTACAGTAATCTCAAAACTACAGTGCTCCTAAAGCTATAGTACTCCTAAAGCTACAATAATTCAAAAGCTATAGTGATCCAAAAGCTACAGTACTCCAAAAGCTACAATAATCCAAAAGCTACAATAATCCAAAAGCTACAATAATCCTGAAGCCACAGTAATCTCAAAGCTACAGTAATCCGAAAGCTATAGTAATCCAAAAGCTATAGTAAGCTTGAAGCTGCAGTAATTGACTGCAGTAACCTCAGAGCTACAGTAATCAATTACAAAGTCATCGCTCACCTTCAGTAACCGACTACAATAATCTAACAGTTACAGTAATCTCAAACCTACAGTATTCTCAGAAAGTCCAATGTCCAATTTTTGTATTTTCAAAAAATCAATAAAAATTTTACAACTTCTTTTATCAATATGTCATATTTTCACACCTCGCGTCCTTATCAGAGACTAATAAAAACTAATGGGGTATTGGACTTTAAACAGGCTTTGACCACCTGCACATCAAACTTTTCTTTATTGTACAAAACTACAGTAATCCCAAACTCACTTGTCTTGAAATATCGATCAATTGTGTCCCGTGGCATGTGAGGTGTACGGTTGGAAGAAAATAGATGATGGAATTGATCCATGTCCCAAGTGACGCCTCGAGATGATGTTACTGGCCATTTTCCACTGAAAATGGGACTTTTAGTAATGTGGCCTAGAAATACAAAAGTTTGGACTTCTAGGCCATCATACTTCTCCTAAAATAGGCTCTCGTGATAATAGATGACCTAGAAAACCAAAAAAACGTGTGTTTCTAGGCCACAGTAGCTTGGTGGCCTGGAAAAAAAAATAATAGCTG</canonical>
            <polymorphic>TTCAAAGTGTCGTCGTCTTGATTCAGAATATTGATTTTCCAGAAGCACCCATTACAACAAACGATGACGTGGCATGGGGTGTCGCCTTCTTCTTCTGGAAGAATCTACCATAATATCAAAGTTACAGTAATCCCAAAGTTACAGCAACTCCAAAGCTACAGTAATCTCAAAACTACAGTGCTCCTAAAGCTATAGTACTCCTAAAGCTACAATAATTCAAAAGCTATAGTGATCCAAAAGCTACAGTACTCCAAAAGCTACAATAATCCAAAAGCTACAATAATCCAAAAGCTACAATAATCCTGAAGCCACAGTAATCTCAAAGCTACAGTAATCCGAAAGCTATAGTAATCCAAAAGCTATAGTAAGCTTGAAGCTGCAGTAATTGACTGCAGTAACCTCAGAGCTACAGTAATCAATTACAAAGTCATCGCTCACCTTCAGTAACCGACTACAATAATCTAACAGTTACAGTAATCTCAAACCTACAGTATTCTCASAAAGTCCAATGTCCAATTTTTGTATTTTCAAAAAATCAATAAAAATTTTACAACTTCTTTTATCAATATGTCATATTTTCACACCTCGCGTCCTTATCAGAGACTAATAAAAACTAATGGGGTATTGGACTTTAAACAGGCTTTGACCACCTGCACATCAAACTTTTCTTTATTGTACAAAACTACAGTAATCCCAAACTCACTTGTCTTGAAATATCGATCAATTGTGTCCCGTGGCATGTGAGGTGTACGGTTGGAAGAAAATAGATGATGGAATTGATCCATGTCCCAAGTGACGCCTCGAGATGATGTTACTGGCCATTTTCCACTGAAAATGGGACTTTTAGTAATGTGGCCTAGAAATACAAAAGTTTGGACTTCTAGGCCATCATACTTCTCCTAAAATAGGCTCTCGTGATAATAGATGACCTAGAAAACCAAAAAAACGTGTGTTTCTAGGCCACAGTAGCTTGGTGGCCTGGAAAAAAAAATAATAGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 400 96</canonical_bands>
                <polymorphic_bands>600 400</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>401 312 100 96 66 25</canonical_bands>
                <polymorphic_bands>401 312 196 66 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACCTCAGAGCTACAGTAATCAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGCCTGTTTAAAGTCCAATAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AACCTCAGAGCTACAGTAATCAATTACAAAGTCATCGCTCACCTTCAGTAACCGACTACAATAATCTAACAGTTACAGTAATCTCAAACCTACAGTATTCTCAGAAAGTCCAATGTCCAATTTTTGTATTTTCAAAAAATCAATAAAAATTTTACAACTTCTTTTATCAATATGTCATATTTTCACACCTCGCGTCCTTATCAGAGACTAATAAAAACTAATGGGGTATTGGACTTTAAACAGGCTTT</canonical_amplicon>
		<polymorphic_amplicon>AACCTCAGAGCTACAGTAATCAATTACAAAGTCATCGCTCACCTTCAGTAACCGACTACAATAATCTAACAGTTACAGTAATCTCAAACCTACAGTATTCTCASAAAGTCCAATGTCCAATTTTTGTATTTTCAAAAAATCAATAAAAATTTTACAACTTCTTTTATCAATATGTCATATTTTCACACCTCGCGTCCTTATCAGAGACTAATAAAAACTAATGGGGTATTGGACTTTAAACAGGCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32941</snp_id>
        <super_contig>c007700947.Contig1</super_contig>
        <contig_pos>23421</contig_pos>
        <strand>+</strand>
        <context>TCTCASAAAG[C/T]CCAATGTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATAATCTAACAGTTACAGTAATCTCAAACCTACAGTATTCTCAGAAAG</left_flank>
        <right_flank>CCAATGTCCAATTTTTGTATTTTCAAAAAATCAATAAAAATTTTACAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGTCGTCGTCTTGATTCAGAATATTGATTTTCCAGAAGCACCCATTACAACAAACGATGACGTGGCATGGGGTGTCGCCTTCTTCTTCTGGAAGAATCTACCATAATATCAAAGTTACAGTAATCCCAAAGTTACAGCAACTCCAAAGCTACAGTAATCTCAAAACTACAGTGCTCCTAAAGCTATAGTACTCCTAAAGCTACAATAATTCAAAAGCTATAGTGATCCAAAAGCTACAGTACTCCAAAAGCTACAATAATCCAAAAGCTACAATAATCCAAAAGCTACAATAATCCTGAAGCCACAGTAATCTCAAAGCTACAGTAATCCGAAAGCTATAGTAATCCAAAAGCTATAGTAAGCTTGAAGCTGCAGTAATTGACTGCAGTAACCTCAGAGCTACAGTAATCAATTACAAAGTCATCGCTCACCTTCAGTAACCGACTACAATAATCTAACAGTTACAGTAATCTCAAACCTACAGTATTCTCAGAAAGTCCAATGTCCAATTTTTGTATTTTCAAAAAATCAATAAAAATTTTACAACTTCTTTTATCAATATGTCATATTTTCACACCTCGCGTCCTTATCAGAGACTAATAAAAACTAATGGGGTATTGGACTTTAAACAGGCTTTGACCACCTGCACATCAAACTTTTCTTTATTGTACAAAACTACAGTAATCCCAAACTCACTTGTCTTGAAATATCGATCAATTGTGTCCCGTGGCATGTGAGGTGTACGGTTGGAAGAAAATAGATGATGGAATTGATCCATGTCCCAAGTGACGCCTCGAGATGATGTTACTGGCCATTTTCCACTGAAAATGGGACTTTTAGTAATGTGGCCTAGAAATACAAAAGTTTGGACTTCTAGGCCATCATACTTCTCCTAAAATAGGCTCTCGTGATAATAGATGACCTAGAAAACCAAAAAAACGTGTGTTTCTAGGCCACAGTAGCTTGGTGGCCTGGAAAAAAAAATAATAGCTGGGTTT</canonical>
            <polymorphic>AGTGTCGTCGTCTTGATTCAGAATATTGATTTTCCAGAAGCACCCATTACAACAAACGATGACGTGGCATGGGGTGTCGCCTTCTTCTTCTGGAAGAATCTACCATAATATCAAAGTTACAGTAATCCCAAAGTTACAGCAACTCCAAAGCTACAGTAATCTCAAAACTACAGTGCTCCTAAAGCTATAGTACTCCTAAAGCTACAATAATTCAAAAGCTATAGTGATCCAAAAGCTACAGTACTCCAAAAGCTACAATAATCCAAAAGCTACAATAATCCAAAAGCTACAATAATCCTGAAGCCACAGTAATCTCAAAGCTACAGTAATCCGAAAGCTATAGTAATCCAAAAGCTATAGTAAGCTTGAAGCTGCAGTAATTGACTGCAGTAACCTCAGAGCTACAGTAATCAATTACAAAGTCATCGCTCACCTTCAGTAACCGACTACAATAATCTAACAGTTACAGTAATCTCAAACCTACAGTATTCTCAGAAAGYCCAATGTCCAATTTTTGTATTTTCAAAAAATCAATAAAAATTTTACAACTTCTTTTATCAATATGTCATATTTTCACACCTCGCGTCCTTATCAGAGACTAATAAAAACTAATGGGGTATTGGACTTTAAACAGGCTTTGACCACCTGCACATCAAACTTTTCTTTATTGTACAAAACTACAGTAATCCCAAACTCACTTGTCTTGAAATATCGATCAATTGTGTCCCGTGGCATGTGAGGTGTACGGTTGGAAGAAAATAGATGATGGAATTGATCCATGTCCCAAGTGACGCCTCGAGATGATGTTACTGGCCATTTTCCACTGAAAATGGGACTTTTAGTAATGTGGCCTAGAAATACAAAAGTTTGGACTTCTAGGCCATCATACTTCTCCTAAAATAGGCTCTCGTGATAATAGATGACCTAGAAAACCAAAAAAACGTGTGTTTCTAGGCCACAGTAGCTTGGTGGCCTGGAAAAAAAAATAATAGCTGGGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCTCAGAGCTACAGTAATCAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGCCTGTTTAAAGTCCAATAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AACCTCAGAGCTACAGTAATCAATTACAAAGTCATCGCTCACCTTCAGTAACCGACTACAATAATCTAACAGTTACAGTAATCTCAAACCTACAGTATTCTCAGAAAGTCCAATGTCCAATTTTTGTATTTTCAAAAAATCAATAAAAATTTTACAACTTCTTTTATCAATATGTCATATTTTCACACCTCGCGTCCTTATCAGAGACTAATAAAAACTAATGGGGTATTGGACTTTAAACAGGCTTT</canonical_amplicon>
		<polymorphic_amplicon>AACCTCAGAGCTACAGTAATCAATTACAAAGTCATCGCTCACCTTCAGTAACCGACTACAATAATCTAACAGTTACAGTAATCTCAAACCTACAGTATTCTCAGAAAGYCCAATGTCCAATTTTTGTATTTTCAAAAAATCAATAAAAATTTTACAACTTCTTTTATCAATATGTCATATTTTCACACCTCGCGTCCTTATCAGAGACTAATAAAAACTAATGGGGTATTGGACTTTAAACAGGCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32942</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11635</contig_pos>
        <strand>-</strand>
        <context>GCTTTAAATA[C/T]AYTCCATATT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATA</left_flank>
        <right_flank>ACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGATATGGCAATATGGGTCGAAGCTCATGAGCTCATGACCACGATTCTGGACAAAAATTTCAGAAATGTTGAATTTTGAGCAAAATAGGAGTTGTGCTCTATCTGATCCAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAAT</canonical>
            <polymorphic>TAGATATGGCAATATGGGTCGAAGCTCATGAGCTCATGACCACGATTCTGGACAAAAATTTCAGAAATGTTGAATTTTGAGCAAAATAGGAGTTGTGCTCTATCTGATCCAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAYACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGATTTGAAGAGATGAAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>467</pcr_amplicon_size>
		<canonical_amplicon>GCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>GCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAYACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32943</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11637</contig_pos>
        <strand>-</strand>
        <context>TTTAAATAYA[C/T]TCCATATTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAA</left_flank>
        <right_flank>TCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATATGGCAATATGGGTCGAAGCTCATGAGCTCATGACCACGATTCTGGACAAAAATTTCAGAAATGTTGAATTTTGAGCAAAATAGGAGTTGTGCTCTATCTGATCCAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTT</canonical>
            <polymorphic>GATATGGCAATATGGGTCGAAGCTCATGAGCTCATGACCACGATTCTGGACAAAAATTTCAGAAATGTTGAATTTTGAGCAAAATAGGAGTTGTGCTCTATCTGATCCAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAAYTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATTTGAAGAGATGAAAATACA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>466</pcr_amplicon_size>
		<canonical_amplicon>CGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAAYTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32944</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11649</contig_pos>
        <strand>-</strand>
        <context>CCATATTAAC[A/G]TGTCTATTRT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAAC</left_flank>
        <right_flank>TGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGGTCGAAGCTCATGAGCTCATGACCACGATTCTGGACAAAAATTTCAGAAATGTTGAATTTTGAGCAAAATAGGAGTTGTGCTCTATCTGATCCAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGA</canonical>
            <polymorphic>TGGGTCGAAGCTCATGAGCTCATGACCACGATTCTGGACAAAAATTTCAGAAATGTTGAATTTTGAGCAAAATAGGAGTTGTGCTCTATCTGATCCAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACRTGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>498 403 99</canonical_bands>
                <polymorphic_bands>901 99</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>498 403 99</canonical_bands>
                <polymorphic_bands>901 99</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>502 374 95 29</canonical_bands>
                <polymorphic_bands>531 374 95</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>280 225 198 149 98 29 13 8</canonical_bands>
                <polymorphic_bands>280 227 225 149 98 13 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGATGAAAATACAATTTTTCCAC</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>457</pcr_amplicon_size>
		<canonical_amplicon>GAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>GAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACRTGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32945</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11658</contig_pos>
        <strand>-</strand>
        <context>CRTGTCTATT[A/G]TGAAATCGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATT</left_flank>
        <right_flank>TGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCATGAGCTCATGACCACGATTCTGGACAAAAATTTCAGAAATGTTGAATTTTGAGCAAAATAGGAGTTGTGCTCTATCTGATCCAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGA</canonical>
            <polymorphic>GCTCATGAGCTCATGACCACGATTCTGGACAAAAATTTCAGAAATGTTGAATTTTGAGCAAAATAGGAGTTGTGCTCTATCTGATCCAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTRTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGATGAAAATACAATTTTTCCAC</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>457</pcr_amplicon_size>
		<canonical_amplicon>GAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>GAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTRTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32946</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11715</contig_pos>
        <strand>-</strand>
        <context>ATGCTCCAAA[G/T]TCCWATTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAA</left_flank>
        <right_flank>TCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAAAATAGGAGTTGTGCTCTATCTGATCCAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTG</canonical>
            <polymorphic>GCAAAATAGGAGTTGTGCTCTATCTGATCCAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAAKTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAAKTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32947</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11726</contig_pos>
        <strand>-</strand>
        <context>TCCWATTTTT[C/T]ACTYGATATY</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTT</left_flank>
        <right_flank>ACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTGTGCTCTATCTGATCCAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTA</canonical>
            <polymorphic>GTTGTGCTCTATCTGATCCAAAATGCTCAAAATTCCAAAATCGAGCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTYACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>402 225 183 80 37 31 26 16</canonical_bands>
                <polymorphic_bands>402 225 183 111 37 26 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTYACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32948</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11770</contig_pos>
        <strand>-</strand>
        <context>CTRMTAYCGC[A/C]GAKAAATTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGC</left_flank>
        <right_flank>GAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTA</canonical>
            <polymorphic>GCTAAATAGGGCAATGTGGGTACCAAATTGAAGCTCAAGAGCTCGGGACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCMGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 422 76</canonical_bands>
                <polymorphic_bands>578 422</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCMGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32949</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11817</contig_pos>
        <strand>-</strand>
        <context>YAATTTMGAG[G/T]GTTTRGGAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAG</left_flank>
        <right_flank>GTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTT</canonical>
            <polymorphic>ACCCCGATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGKGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGKGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32950</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11822</contig_pos>
        <strand>-</strand>
        <context>TMGAGKGTTT[A/G]GGAGCATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTT</left_flank>
        <right_flank>GGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGT</canonical>
            <polymorphic>GATTCTAGGGGAACACTTCAAAAATATCAAATTTTGAGCAAAATAGGACTAGTGCTCTTTTTGCTCCAAAATGCTCCAAACTCCAAAAATGAGCTGGATAGGGCAATATGGATATCAAATGAAAGCTCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTRGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTRGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32951</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>11948</contig_pos>
        <strand>-</strand>
        <context>SWAAAATRTC[C/T]AAAATTGAGK</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTC</left_flank>
        <right_flank>AAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAAAAAGAAAATTTTTGGTGGGAAAAAATTATT</canonical>
            <polymorphic>TCATGAGCTCAGGACCTCAACTCTGTTGGAATATTCAAAAAAAATCAAAATTGAGCAAGATAGGACTTGTGTTTTTTTTTTGATTTTCTGAATATCAAAATTTCCTGTGTTTTTTTCTAGATTTTCGGTATTTTAGCGATTTGAAGAGATGAAAATACAATTTTTCCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCYAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCACATGTGCTGGTGATCTCAAATCTAAAAGAAAATTATAGAAATTCAGAAATTTGGAAAAGTTAGGACCCTTTCAATTTTTCGAAATTTCTAAAAAAACGAAATTGAAGACACAAGGAGACAAAAAAGTGGGTGTTCAAGTGTCATGGAGTACCCTAGACTAAAGTGGGCGTGGCCTATGGACCACAAGTATTTATACTTTTTTTTCAAAAGAAAAGACGTAAAAAATTGAGTGATTTACGGCGACCTGTCACTTGGATTAGTACTTTTCGTGTTCCGAAAATTTTCTCTTTTTTCCGAATTTCAAGTGGTTTTTTTTAGAATTTTTTGATGTCATTGGTAGTCTAGTCACAAGAATTTTTTAAGACTAAAAAGAAAATTTTTGGTGGGAAAAAATTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACGTTGAGAGCTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAATTTGATACCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCAAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCACGTTGAGAGCTTTAAATAAACTCCATATTAACATGTCTATTTTGAAATCGAGTTTTGGAGCATGTTTGGTGCTCCGCGAGCCCTGAAAATGCTCCAAACTCCTATTTTTAACTAGATATACCATTATGGTGCTTATTCTTAAGCTCTTAGCGCGGAAAAATTGTTTAAAACACCGAAATCTTGAAATTTTGAATTTGGAGCGTTTTGGAGCATTTTGGAGCTCTGAAAATGCTCCAAACTTCAAAAATGAGCTAGATATGGCAATTTGGGTATCAAATGAAAGCTCATGAGCTCAGTACTGCGATTCTGATTGAAGATACACTAAAATTTCYAAAATTGAGCGAAATAGGACAAATTGAGCTCTTTTTGCTCCGAAATGGTCCAAAATTTTAAAAGTGAGCTAGATGGGGCATTATGGGTATCAAATTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32952</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>12934</contig_pos>
        <strand></strand>
        <context>GAGCACATGT[T/C]YTATTTTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTAGCTCATTTTTGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACATGT</left_flank>
        <right_flank>TTATTTTTCTCAATTTTCAGATTTTTCTAGAATTTTCAAGCAGATTTGAA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGAAAAAATTATTTTTTTTTAATAAATAAAAAAATATCATAAGACGCCAGGTTTCTGAGAAAATGTGACAAAGAAAATTTGTCATTTGATACCTGAGAGAATCAAAAATTCCGAAAAAAAATGGCTCAAAATCCTGGGAAAAAATAACTAGGATCACATGAGAAAATGGGGAAAGTGCAATTTTTTGAAAATTCCAAAAAAAAATCCGTTTTTTACAGAAAAGTCGCAGATTTTCTACAAATTTTCTATCAGATCTGAGGTCCCCAGCTCCTGAGCTTTCATTTGATACCCATATTGACCCATCTAGCTCCTTTTTGCAATTCGGAGCATTTTGGAGCAAAAAGAGCACACGTCATATTTTGCTCAATTTCCACATTTTTTCAGAATGTTCTAGCAGATACAAAGTCCCGAGCTGCTGAGCTTCCGTTTAATACCCATAATGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACATGTTTTATTTTTCTCAATTTTCAGATTTTTCTAGAATTTTCAAGCAGATTTGAAGTTCCGAACTCCTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGAGAGCTCCAAAATGCTCCGAACTTCAAAATTTTAACAAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCCTATATTAGCATTCCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAATAATGCTCCAAAACTCGATTTCAAGATAGACATATTAATATGGAGCTCATTTTAAAGCTTTCAACGTGACAAATTCAAATTTGCTAGTTTCAAATCGCTAACTACCAGCAATCTAGAAAAAAAAACCTTTAAAATATGCAAAAATAAGTAAAAAGAGCACTATTTTGCTCAAAATTCAAAATTCTCAAAGTTTTAATCTAGTAACAGGGTTTTGGGCTCATGAGC</canonical>
            <polymorphic>GGGAAAAAATTATTTTTTTTTAATAAATAAAAAAATATCATAAGACGCCAGGTTTCTGAGAAAATGTGACAAAGAAAATTTGTCATTTGATACCTGAGAGAATCAAAAATTCCGAAAAAAAATGGCTCAAAATCCTGGGAAAAAATAACTAGGATCACATGAGAAAATGGGGAAAGTGCAATTTTTTGAAAATTCCAAAAAAAAATCCGTTTTTTACAGAAAAGTCGCAGATTTTCTACAAATTTTCTATCAGATCTGAGGTCCCCAGCTCCTGAGCTTTCATTTGATACCCATATTGACCCATCTAGCTCCTTTTTGCAATTCGGAGCATTTTGGAGCAAAAAGAGCACACGTCATATTTTGCTCAATTTCCACATTTTTTCAGAATGTTCTAGCAGATACAAAGTCCCGAGCTGCTGAGCTTCCGTTTAATACCCATAATGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACATGTYTTATTTTTCTCAATTTTCAGATTTTTCTAGAATTTTCAAGCAGATTTGAAGTTCCGAACTCCTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGAGAGCTCCAAAATGCTCCGAACTTCAAAATTTTAACAAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCCTATATTAGCATTCCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAATAATGCTCCAAAACTCGATTTCAAGATAGACATATTAATATGGAGCTCATTTTAAAGCTTTCAACGTGACAAATTCAAATTTGCTAGTTTCAAATCGCTAACTACCAGCAATCTAGAAAAAAAAACCTTTAAAATATGCAAAAATAAGTAAAAAGAGCACTATTTTGCTCAAAATTCAAAATTCTCAAAGTTTTAATCTAGTAACAGGGTTTTGGGCTCATGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCTATTTAGCTCATTTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTCTAGATTGCTGGTAGTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>451</pcr_amplicon_size>
		<canonical_amplicon>CCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACATGTTTTATTTTTCTCAATTTTCAGATTTTTCTAGAATTTTCAAGCAGATTTGAAGTTCCGAACTCCTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGAGAGCTCCAAAATGCTCCGAACTTCAAAATTTTAACAAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCCTATATTAGCATTCCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAATAATGCTCCAAAACTCGATTTCAAGATAGACATATTAATATGGAGCTCATTTTAAAGCTTTCAACGTGACAAATTCAAATTTGCTAGTTTCAAATCGCTAACTACCAGCAATCTAGAAA</canonical_amplicon>
		<polymorphic_amplicon>CCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACATGTYTTATTTTTCTCAATTTTCAGATTTTTCTAGAATTTTCAAGCAGATTTGAAGTTCCGAACTCCTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGAGAGCTCCAAAATGCTCCGAACTTCAAAATTTTAACAAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCCTATATTAGCATTCCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAATAATGCTCCAAAACTCGATTTCAAGATAGACATATTAATATGGAGCTCATTTTAAAGCTTTCAACGTGACAAATTCAAATTTGCTAGTTTCAAATCGCTAACTACCAGCAATCTAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32953</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>12935</contig_pos>
        <strand></strand>
        <context>AGCACATGTY[T/C]TATTTTTCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAGCTCATTTTTGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACATGTT</left_flank>
        <right_flank>TATTTTTCTCAATTTTCAGATTTTTCTAGAATTTTCAAGCAGATTTGAAG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAAAAATTATTTTTTTTTAATAAATAAAAAAATATCATAAGACGCCAGGTTTCTGAGAAAATGTGACAAAGAAAATTTGTCATTTGATACCTGAGAGAATCAAAAATTCCGAAAAAAAATGGCTCAAAATCCTGGGAAAAAATAACTAGGATCACATGAGAAAATGGGGAAAGTGCAATTTTTTGAAAATTCCAAAAAAAAATCCGTTTTTTACAGAAAAGTCGCAGATTTTCTACAAATTTTCTATCAGATCTGAGGTCCCCAGCTCCTGAGCTTTCATTTGATACCCATATTGACCCATCTAGCTCCTTTTTGCAATTCGGAGCATTTTGGAGCAAAAAGAGCACACGTCATATTTTGCTCAATTTCCACATTTTTTCAGAATGTTCTAGCAGATACAAAGTCCCGAGCTGCTGAGCTTCCGTTTAATACCCATAATGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACATGTTTTATTTTTCTCAATTTTCAGATTTTTCTAGAATTTTCAAGCAGATTTGAAGTTCCGAACTCCTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGAGAGCTCCAAAATGCTCCGAACTTCAAAATTTTAACAAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCCTATATTAGCATTCCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAATAATGCTCCAAAACTCGATTTCAAGATAGACATATTAATATGGAGCTCATTTTAAAGCTTTCAACGTGACAAATTCAAATTTGCTAGTTTCAAATCGCTAACTACCAGCAATCTAGAAAAAAAAACCTTTAAAATATGCAAAAATAAGTAAAAAGAGCACTATTTTGCTCAAAATTCAAAATTCTCAAAGTTTTAATCTAGTAACAGGGTTTTGGGCTCATGAGCT</canonical>
            <polymorphic>GGAAAAAATTATTTTTTTTTAATAAATAAAAAAATATCATAAGACGCCAGGTTTCTGAGAAAATGTGACAAAGAAAATTTGTCATTTGATACCTGAGAGAATCAAAAATTCCGAAAAAAAATGGCTCAAAATCCTGGGAAAAAATAACTAGGATCACATGAGAAAATGGGGAAAGTGCAATTTTTTGAAAATTCCAAAAAAAAATCCGTTTTTTACAGAAAAGTCGCAGATTTTCTACAAATTTTCTATCAGATCTGAGGTCCCCAGCTCCTGAGCTTTCATTTGATACCCATATTGACCCATCTAGCTCCTTTTTGCAATTCGGAGCATTTTGGAGCAAAAAGAGCACACGTCATATTTTGCTCAATTTCCACATTTTTTCAGAATGTTCTAGCAGATACAAAGTCCCGAGCTGCTGAGCTTCCGTTTAATACCCATAATGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACATGTTYTATTTTTCTCAATTTTCAGATTTTTCTAGAATTTTCAAGCAGATTTGAAGTTCCGAACTCCTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGAGAGCTCCAAAATGCTCCGAACTTCAAAATTTTAACAAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCCTATATTAGCATTCCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAATAATGCTCCAAAACTCGATTTCAAGATAGACATATTAATATGGAGCTCATTTTAAAGCTTTCAACGTGACAAATTCAAATTTGCTAGTTTCAAATCGCTAACTACCAGCAATCTAGAAAAAAAAACCTTTAAAATATGCAAAAATAAGTAAAAAGAGCACTATTTTGCTCAAAATTCAAAATTCTCAAAGTTTTAATCTAGTAACAGGGTTTTGGGCTCATGAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCTATTTAGCTCATTTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTCTAGATTGCTGGTAGTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>451</pcr_amplicon_size>
		<canonical_amplicon>CCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACATGTTTTATTTTTCTCAATTTTCAGATTTTTCTAGAATTTTCAAGCAGATTTGAAGTTCCGAACTCCTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGAGAGCTCCAAAATGCTCCGAACTTCAAAATTTTAACAAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCCTATATTAGCATTCCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAATAATGCTCCAAAACTCGATTTCAAGATAGACATATTAATATGGAGCTCATTTTAAAGCTTTCAACGTGACAAATTCAAATTTGCTAGTTTCAAATCGCTAACTACCAGCAATCTAGAAA</canonical_amplicon>
		<polymorphic_amplicon>CCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACATGTTYTATTTTTCTCAATTTTCAGATTTTTCTAGAATTTTCAAGCAGATTTGAAGTTCCGAACTCCTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGAGAGCTCCAAAATGCTCCGAACTTCAAAATTTTAACAAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCCTATATTAGCATTCCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAATAATGCTCCAAAACTCGATTTCAAGATAGACATATTAATATGGAGCTCATTTTAAAGCTTTCAACGTGACAAATTCAAATTTGCTAGTTTCAAATCGCTAACTACCAGCAATCTAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32954</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>12982</contig_pos>
        <strand></strand>
        <context>AAGCAGATTT[G/A]AAGTTCCGAR</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTTTTATTTTTCTCAATTTTCAGATTTTTCTAGAATTTTCAAGCAGATTT</left_flank>
        <right_flank>AAGTTCCGAACTCCTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGGTTTCTGAGAAAATGTGACAAAGAAAATTTGTCATTTGATACCTGAGAGAATCAAAAATTCCGAAAAAAAATGGCTCAAAATCCTGGGAAAAAATAACTAGGATCACATGAGAAAATGGGGAAAGTGCAATTTTTTGAAAATTCCAAAAAAAAATCCGTTTTTTACAGAAAAGTCGCAGATTTTCTACAAATTTTCTATCAGATCTGAGGTCCCCAGCTCCTGAGCTTTCATTTGATACCCATATTGACCCATCTAGCTCCTTTTTGCAATTCGGAGCATTTTGGAGCAAAAAGAGCACACGTCATATTTTGCTCAATTTCCACATTTTTTCAGAATGTTCTAGCAGATACAAAGTCCCGAGCTGCTGAGCTTCCGTTTAATACCCATAATGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACATGTTTTATTTTTCTCAATTTTCAGATTTTTCTAGAATTTTCAAGCAGATTTGAAGTTCCGAACTCCTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGAGAGCTCCAAAATGCTCCGAACTTCAAAATTTTAACAAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCCTATATTAGCATTCCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAATAATGCTCCAAAACTCGATTTCAAGATAGACATATTAATATGGAGCTCATTTTAAAGCTTTCAACGTGACAAATTCAAATTTGCTAGTTTCAAATCGCTAACTACCAGCAATCTAGAAAAAAAAACCTTTAAAATATGCAAAAATAAGTAAAAAGAGCACTATTTTGCTCAAAATTCAAAATTCTCAAAGTTTTAATCTAGTAACAGGGTTTTGGGCTCATGAGCTTTAATTTGGTTTTGATATTGTCCTATCTAGCTCATTTTTGACATTTG</canonical>
            <polymorphic>CAGGTTTCTGAGAAAATGTGACAAAGAAAATTTGTCATTTGATACCTGAGAGAATCAAAAATTCCGAAAAAAAATGGCTCAAAATCCTGGGAAAAAATAACTAGGATCACATGAGAAAATGGGGAAAGTGCAATTTTTTGAAAATTCCAAAAAAAAATCCGTTTTTTACAGAAAAGTCGCAGATTTTCTACAAATTTTCTATCAGATCTGAGGTCCCCAGCTCCTGAGCTTTCATTTGATACCCATATTGACCCATCTAGCTCCTTTTTGCAATTCGGAGCATTTTGGAGCAAAAAGAGCACACGTCATATTTTGCTCAATTTCCACATTTTTTCAGAATGTTCTAGCAGATACAAAGTCCCGAGCTGCTGAGCTTCCGTTTAATACCCATAATGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACATGTTTTATTTTTCTCAATTTTCAGATTTTTCTAGAATTTTCAAGCAGATTTRAAGTTCCGAACTCCTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGAGAGCTCCAAAATGCTCCGAACTTCAAAATTTTAACAAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCCTATATTAGCATTCCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAATAATGCTCCAAAACTCGATTTCAAGATAGACATATTAATATGGAGCTCATTTTAAAGCTTTCAACGTGACAAATTCAAATTTGCTAGTTTCAAATCGCTAACTACCAGCAATCTAGAAAAAAAAACCTTTAAAATATGCAAAAATAAGTAAAAAGAGCACTATTTTGCTCAAAATTCAAAATTCTCAAAGTTTTAATCTAGTAACAGGGTTTTGGGCTCATGAGCTTTAATTTGGTTTTGATATTGTCCTATCTAGCTCATTTTTGACATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAATTTGGAGCATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTAGATTGCTGGTAGTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>435</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACATGTTTTATTTTTCTCAATTTTCAGATTTTTCTAGAATTTTCAAGCAGATTTGAAGTTCCGAACTCCTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGAGAGCTCCAAAATGCTCCGAACTTCAAAATTTTAACAAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCCTATATTAGCATTCCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAATAATGCTCCAAAACTCGATTTCAAGATAGACATATTAATATGGAGCTCATTTTAAAGCTTTCAACGTGACAAATTCAAATTTGCTAGTTTCAAATCGCTAACTACCAGCAATCTAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACATGTTTTATTTTTCTCAATTTTCAGATTTTTCTAGAATTTTCAAGCAGATTTRAAGTTCCGAACTCCTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGAGAGCTCCAAAATGCTCCGAACTTCAAAATTTTAACAAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCCTATATTAGCATTCCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAATAATGCTCCAAAACTCGATTTCAAGATAGACATATTAATATGGAGCTCATTTTAAAGCTTTCAACGTGACAAATTCAAATTTGCTAGTTTCAAATCGCTAACTACCAGCAATCTAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32955</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>12992</contig_pos>
        <strand></strand>
        <context>RAAGTTCCGA[A/G]CTCMTGAGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTCAATTTTCAGATTTTTCTAGAATTTTCAAGCAGATTTGAAGTTCCGA</left_flank>
        <right_flank>CTCCTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAAATGTGACAAAGAAAATTTGTCATTTGATACCTGAGAGAATCAAAAATTCCGAAAAAAAATGGCTCAAAATCCTGGGAAAAAATAACTAGGATCACATGAGAAAATGGGGAAAGTGCAATTTTTTGAAAATTCCAAAAAAAAATCCGTTTTTTACAGAAAAGTCGCAGATTTTCTACAAATTTTCTATCAGATCTGAGGTCCCCAGCTCCTGAGCTTTCATTTGATACCCATATTGACCCATCTAGCTCCTTTTTGCAATTCGGAGCATTTTGGAGCAAAAAGAGCACACGTCATATTTTGCTCAATTTCCACATTTTTTCAGAATGTTCTAGCAGATACAAAGTCCCGAGCTGCTGAGCTTCCGTTTAATACCCATAATGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACATGTTTTATTTTTCTCAATTTTCAGATTTTTCTAGAATTTTCAAGCAGATTTGAAGTTCCGAACTCCTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGAGAGCTCCAAAATGCTCCGAACTTCAAAATTTTAACAAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCCTATATTAGCATTCCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAATAATGCTCCAAAACTCGATTTCAAGATAGACATATTAATATGGAGCTCATTTTAAAGCTTTCAACGTGACAAATTCAAATTTGCTAGTTTCAAATCGCTAACTACCAGCAATCTAGAAAAAAAAACCTTTAAAATATGCAAAAATAAGTAAAAAGAGCACTATTTTGCTCAAAATTCAAAATTCTCAAAGTTTTAATCTAGTAACAGGGTTTTGGGCTCATGAGCTTTAATTTGGTTTTGATATTGTCCTATCTAGCTCATTTTTGACATTTGGAGCATTTTC</canonical>
            <polymorphic>AGAAAATGTGACAAAGAAAATTTGTCATTTGATACCTGAGAGAATCAAAAATTCCGAAAAAAAATGGCTCAAAATCCTGGGAAAAAATAACTAGGATCACATGAGAAAATGGGGAAAGTGCAATTTTTTGAAAATTCCAAAAAAAAATCCGTTTTTTACAGAAAAGTCGCAGATTTTCTACAAATTTTCTATCAGATCTGAGGTCCCCAGCTCCTGAGCTTTCATTTGATACCCATATTGACCCATCTAGCTCCTTTTTGCAATTCGGAGCATTTTGGAGCAAAAAGAGCACACGTCATATTTTGCTCAATTTCCACATTTTTTCAGAATGTTCTAGCAGATACAAAGTCCCGAGCTGCTGAGCTTCCGTTTAATACCCATAATGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACATGTTTTATTTTTCTCAATTTTCAGATTTTTCTAGAATTTTCAAGCAGATTTGAAGTTCCGARCTCCTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGAGAGCTCCAAAATGCTCCGAACTTCAAAATTTTAACAAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCCTATATTAGCATTCCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAATAATGCTCCAAAACTCGATTTCAAGATAGACATATTAATATGGAGCTCATTTTAAAGCTTTCAACGTGACAAATTCAAATTTGCTAGTTTCAAATCGCTAACTACCAGCAATCTAGAAAAAAAAACCTTTAAAATATGCAAAAATAAGTAAAAAGAGCACTATTTTGCTCAAAATTCAAAATTCTCAAAGTTTTAATCTAGTAACAGGGTTTTGGGCTCATGAGCTTTAATTTGGTTTTGATATTGTCCTATCTAGCTCATTTTTGACATTTGGAGCATTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTCAATTTTCAGATTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTCTAGATTGCTGGTAGTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>390</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTCAATTTTCAGATTTTTCTAGAATTTTCAAGCAGATTTGAAGTTCCGAACTCCTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGAGAGCTCCAAAATGCTCCGAACTTCAAAATTTTAACAAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCCTATATTAGCATTCCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAATAATGCTCCAAAACTCGATTTCAAGATAGACATATTAATATGGAGCTCATTTTAAAGCTTTCAACGTGACAAATTCAAATTTGCTAGTTTCAAATCGCTAACTACCAGCAATCTAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTCAATTTTCAGATTTTTCTAGAATTTTCAAGCAGATTTGAAGTTCCGARCTCCTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGAGAGCTCCAAAATGCTCCGAACTTCAAAATTTTAACAAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCCTATATTAGCATTCCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAATAATGCTCCAAAACTCGATTTCAAGATAGACATATTAATATGGAGCTCATTTTAAAGCTTTCAACGTGACAAATTCAAATTTGCTAGTTTCAAATCGCTAACTACCAGCAATCTAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32956</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>12996</contig_pos>
        <strand></strand>
        <context>TTCCGARCTC[C/A]TGAGCTTTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AATTTTCAGATTTTTCTAGAATTTTCAAGCAGATTTGAAGTTCCGAACTC</left_flank>
        <right_flank>TGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAAT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGTGACAAAGAAAATTTGTCATTTGATACCTGAGAGAATCAAAAATTCCGAAAAAAAATGGCTCAAAATCCTGGGAAAAAATAACTAGGATCACATGAGAAAATGGGGAAAGTGCAATTTTTTGAAAATTCCAAAAAAAAATCCGTTTTTTACAGAAAAGTCGCAGATTTTCTACAAATTTTCTATCAGATCTGAGGTCCCCAGCTCCTGAGCTTTCATTTGATACCCATATTGACCCATCTAGCTCCTTTTTGCAATTCGGAGCATTTTGGAGCAAAAAGAGCACACGTCATATTTTGCTCAATTTCCACATTTTTTCAGAATGTTCTAGCAGATACAAAGTCCCGAGCTGCTGAGCTTCCGTTTAATACCCATAATGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACATGTTTTATTTTTCTCAATTTTCAGATTTTTCTAGAATTTTCAAGCAGATTTGAAGTTCCGAACTCCTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGAGAGCTCCAAAATGCTCCGAACTTCAAAATTTTAACAAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCCTATATTAGCATTCCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAATAATGCTCCAAAACTCGATTTCAAGATAGACATATTAATATGGAGCTCATTTTAAAGCTTTCAACGTGACAAATTCAAATTTGCTAGTTTCAAATCGCTAACTACCAGCAATCTAGAAAAAAAAACCTTTAAAATATGCAAAAATAAGTAAAAAGAGCACTATTTTGCTCAAAATTCAAAATTCTCAAAGTTTTAATCTAGTAACAGGGTTTTGGGCTCATGAGCTTTAATTTGGTTTTGATATTGTCCTATCTAGCTCATTTTTGACATTTGGAGCATTTTCAGTG</canonical>
            <polymorphic>AATGTGACAAAGAAAATTTGTCATTTGATACCTGAGAGAATCAAAAATTCCGAAAAAAAATGGCTCAAAATCCTGGGAAAAAATAACTAGGATCACATGAGAAAATGGGGAAAGTGCAATTTTTTGAAAATTCCAAAAAAAAATCCGTTTTTTACAGAAAAGTCGCAGATTTTCTACAAATTTTCTATCAGATCTGAGGTCCCCAGCTCCTGAGCTTTCATTTGATACCCATATTGACCCATCTAGCTCCTTTTTGCAATTCGGAGCATTTTGGAGCAAAAAGAGCACACGTCATATTTTGCTCAATTTCCACATTTTTTCAGAATGTTCTAGCAGATACAAAGTCCCGAGCTGCTGAGCTTCCGTTTAATACCCATAATGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACATGTTTTATTTTTCTCAATTTTCAGATTTTTCTAGAATTTTCAAGCAGATTTGAAGTTCCGAACTCMTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGAGAGCTCCAAAATGCTCCGAACTTCAAAATTTTAACAAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCCTATATTAGCATTCCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAATAATGCTCCAAAACTCGATTTCAAGATAGACATATTAATATGGAGCTCATTTTAAAGCTTTCAACGTGACAAATTCAAATTTGCTAGTTTCAAATCGCTAACTACCAGCAATCTAGAAAAAAAAACCTTTAAAATATGCAAAAATAAGTAAAAAGAGCACTATTTTGCTCAAAATTCAAAATTCTCAAAGTTTTAATCTAGTAACAGGGTTTTGGGCTCATGAGCTTTAATTTGGTTTTGATATTGTCCTATCTAGCTCATTTTTGACATTTGGAGCATTTTCAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 162 145 145 32 16</canonical_bands>
                <polymorphic_bands>645 162 145 32 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTCAATTTTCAGATTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTCTAGATTGCTGGTAGTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>390</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTCAATTTTCAGATTTTTCTAGAATTTTCAAGCAGATTTGAAGTTCCGAACTCCTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGAGAGCTCCAAAATGCTCCGAACTTCAAAATTTTAACAAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCCTATATTAGCATTCCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAATAATGCTCCAAAACTCGATTTCAAGATAGACATATTAATATGGAGCTCATTTTAAAGCTTTCAACGTGACAAATTCAAATTTGCTAGTTTCAAATCGCTAACTACCAGCAATCTAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTCAATTTTCAGATTTTTCTAGAATTTTCAAGCAGATTTGAAGTTCCGAACTCMTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGAGAGCTCCAAAATGCTCCGAACTTCAAAATTTTAACAAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCCTATATTAGCATTCCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAATAATGCTCCAAAACTCGATTTCAAGATAGACATATTAATATGGAGCTCATTTTAAAGCTTTCAACGTGACAAATTCAAATTTGCTAGTTTCAAATCGCTAACTACCAGCAATCTAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32957</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>13146</contig_pos>
        <strand></strand>
        <context>taaatgagcc[C/T]tatattagca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCC</left_flank>
        <right_flank>TATATTAGCATTCCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTACAGAAAAGTCGCAGATTTTCTACAAATTTTCTATCAGATCTGAGGTCCCCAGCTCCTGAGCTTTCATTTGATACCCATATTGACCCATCTAGCTCCTTTTTGCAATTCGGAGCATTTTGGAGCAAAAAGAGCACACGTCATATTTTGCTCAATTTCCACATTTTTTCAGAATGTTCTAGCAGATACAAAGTCCCGAGCTGCTGAGCTTCCGTTTAATACCCATAATGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACATGTTTTATTTTTCTCAATTTTCAGATTTTTCTAGAATTTTCAAGCAGATTTGAAGTTCCGAACTCCTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGAGAGCTCCAAAATGCTCCGAACTTCAAAATTTTAACAAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCCTATATTAGCATTCCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAATAATGCTCCAAAACTCGATTTCAAGATAGACATATTAATATGGAGCTCATTTTAAAGCTTTCAACGTGACAAATTCAAATTTGCTAGTTTCAAATCGCTAACTACCAGCAATCTAGAAAAAAAAACCTTTAAAATATGCAAAAATAAGTAAAAAGAGCACTATTTTGCTCAAAATTCAAAATTCTCAAAGTTTTAATCTAGTAACAGGGTTTTGGGCTCATGAGCTTTAATTTGGTTTTGATATTGTCCTATCTAGCTCATTTTTGACATTTGGAGCATTTTCAGTGCTCTGCGAGCCCAAAAAAAAGTGCTAAAAGACTAAAAATCTGTGTTTTGCGTCAAAAAGGGACTTTTTGAAAAGTGTGAAAAGCCGAAACAATTTGCATAATTTATGAATTTCCATTCAGAAAAATTTCGAAAAAAAATTTTTCTAAAAA</canonical>
            <polymorphic>TTTACAGAAAAGTCGCAGATTTTCTACAAATTTTCTATCAGATCTGAGGTCCCCAGCTCCTGAGCTTTCATTTGATACCCATATTGACCCATCTAGCTCCTTTTTGCAATTCGGAGCATTTTGGAGCAAAAAGAGCACACGTCATATTTTGCTCAATTTCCACATTTTTTCAGAATGTTCTAGCAGATACAAAGTCCCGAGCTGCTGAGCTTCCGTTTAATACCCATAATGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACATGTTTTATTTTTCTCAATTTTCAGATTTTTCTAGAATTTTCAAGCAGATTTGAAGTTCCGAACTCCTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGAGAGCTCCAAAATGCTCCGAACTTCAAAATTTTAACAAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCYTATATTAGCATTCCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAATAATGCTCCAAAACTCGATTTCAAGATAGACATATTAATATGGAGCTCATTTTAAAGCTTTCAACGTGACAAATTCAAATTTGCTAGTTTCAAATCGCTAACTACCAGCAATCTAGAAAAAAAAACCTTTAAAATATGCAAAAATAAGTAAAAAGAGCACTATTTTGCTCAAAATTCAAAATTCTCAAAGTTTTAATCTAGTAACAGGGTTTTGGGCTCATGAGCTTTAATTTGGTTTTGATATTGTCCTATCTAGCTCATTTTTGACATTTGGAGCATTTTCAGTGCTCTGCGAGCCCAAAAAAAAGTGCTAAAAGACTAAAAATCTGTGTTTTGCGTCAAAAAGGGACTTTTTGAAAAGTGTGAAAAGCCGAAACAATTTGCATAATTTATGAATTTCCATTCAGAAAAATTTCGAAAAAAAATTTTTCTAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>419 171 139 111 80 80</canonical_bands>
                <polymorphic_bands>419 191 171 139 80</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>145 139 137 137 112 80 71 60 59 51 9</canonical_bands>
                <polymorphic_bands>145 140 139 137 137 112 71 59 51 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTAGAATTTTCAAGCAGATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTAGATTGCTGGTAGTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>370</pcr_amplicon_size>
		<canonical_amplicon>TTCTAGAATTTTCAAGCAGATTTGAAGTTCCGAACTCCTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGAGAGCTCCAAAATGCTCCGAACTTCAAAATTTTAACAAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCCTATATTAGCATTCCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAATAATGCTCCAAAACTCGATTTCAAGATAGACATATTAATATGGAGCTCATTTTAAAGCTTTCAACGTGACAAATTCAAATTTGCTAGTTTCAAATCGCTAACTACCAGCAATCTAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TTCTAGAATTTTCAAGCAGATTTGAAGTTCCGAACTCCTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGAGAGCTCCAAAATGCTCCGAACTTCAAAATTTTAACAAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCYTATATTAGCATTCCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAATAATGCTCCAAAACTCGATTTCAAGATAGACATATTAATATGGAGCTCATTTTAAAGCTTTCAACGTGACAAATTCAAATTTGCTAGTTTCAAATCGCTAACTACCAGCAATCTAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32958</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>13158</contig_pos>
        <strand></strand>
        <context>atattagcat[T/A]yccagtcaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCCTATATTAGCAT</left_flank>
        <right_flank>CCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGCAGATTTTCTACAAATTTTCTATCAGATCTGAGGTCCCCAGCTCCTGAGCTTTCATTTGATACCCATATTGACCCATCTAGCTCCTTTTTGCAATTCGGAGCATTTTGGAGCAAAAAGAGCACACGTCATATTTTGCTCAATTTCCACATTTTTTCAGAATGTTCTAGCAGATACAAAGTCCCGAGCTGCTGAGCTTCCGTTTAATACCCATAATGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACATGTTTTATTTTTCTCAATTTTCAGATTTTTCTAGAATTTTCAAGCAGATTTGAAGTTCCGAACTCCTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGAGAGCTCCAAAATGCTCCGAACTTCAAAATTTTAACAAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCCTATATTAGCATTCCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAATAATGCTCCAAAACTCGATTTCAAGATAGACATATTAATATGGAGCTCATTTTAAAGCTTTCAACGTGACAAATTCAAATTTGCTAGTTTCAAATCGCTAACTACCAGCAATCTAGAAAAAAAAACCTTTAAAATATGCAAAAATAAGTAAAAAGAGCACTATTTTGCTCAAAATTCAAAATTCTCAAAGTTTTAATCTAGTAACAGGGTTTTGGGCTCATGAGCTTTAATTTGGTTTTGATATTGTCCTATCTAGCTCATTTTTGACATTTGGAGCATTTTCAGTGCTCTGCGAGCCCAAAAAAAAGTGCTAAAAGACTAAAAATCTGTGTTTTGCGTCAAAAAGGGACTTTTTGAAAAGTGTGAAAAGCCGAAACAATTTGCATAATTTATGAATTTCCATTCAGAAAAATTTCGAAAAAAAATTTTTCTAAAAAAATTTTTCCAGA</canonical>
            <polymorphic>TCGCAGATTTTCTACAAATTTTCTATCAGATCTGAGGTCCCCAGCTCCTGAGCTTTCATTTGATACCCATATTGACCCATCTAGCTCCTTTTTGCAATTCGGAGCATTTTGGAGCAAAAAGAGCACACGTCATATTTTGCTCAATTTCCACATTTTTTCAGAATGTTCTAGCAGATACAAAGTCCCGAGCTGCTGAGCTTCCGTTTAATACCCATAATGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACATGTTTTATTTTTCTCAATTTTCAGATTTTTCTAGAATTTTCAAGCAGATTTGAAGTTCCGAACTCCTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGAGAGCTCCAAAATGCTCCGAACTTCAAAATTTTAACAAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCCTATATTAGCATWCCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAATAATGCTCCAAAACTCGATTTCAAGATAGACATATTAATATGGAGCTCATTTTAAAGCTTTCAACGTGACAAATTCAAATTTGCTAGTTTCAAATCGCTAACTACCAGCAATCTAGAAAAAAAAACCTTTAAAATATGCAAAAATAAGTAAAAAGAGCACTATTTTGCTCAAAATTCAAAATTCTCAAAGTTTTAATCTAGTAACAGGGTTTTGGGCTCATGAGCTTTAATTTGGTTTTGATATTGTCCTATCTAGCTCATTTTTGACATTTGGAGCATTTTCAGTGCTCTGCGAGCCCAAAAAAAAGTGCTAAAAGACTAAAAATCTGTGTTTTGCGTCAAAAAGGGACTTTTTGAAAAGTGTGAAAAGCCGAAACAATTTGCATAATTTATGAATTTCCATTCAGAAAAATTTCGAAAAAAAATTTTTCTAAAAAAATTTTTCCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTAGAATTTTCAAGCAGATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTAGATTGCTGGTAGTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>370</pcr_amplicon_size>
		<canonical_amplicon>TTCTAGAATTTTCAAGCAGATTTGAAGTTCCGAACTCCTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGAGAGCTCCAAAATGCTCCGAACTTCAAAATTTTAACAAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCCTATATTAGCATTCCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAATAATGCTCCAAAACTCGATTTCAAGATAGACATATTAATATGGAGCTCATTTTAAAGCTTTCAACGTGACAAATTCAAATTTGCTAGTTTCAAATCGCTAACTACCAGCAATCTAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TTCTAGAATTTTCAAGCAGATTTGAAGTTCCGAACTCCTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGAGAGCTCCAAAATGCTCCGAACTTCAAAATTTTAACAAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCCTATATTAGCATWCCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAATAATGCTCCAAAACTCGATTTCAAGATAGACATATTAATATGGAGCTCATTTTAAAGCTTTCAACGTGACAAATTCAAATTTGCTAGTTTCAAATCGCTAACTACCAGCAATCTAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32959</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>13159</contig_pos>
        <strand></strand>
        <context>tattagcatw[C/T]ccagtcaaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCCTATATTAGCATT</left_flank>
        <right_flank>CCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCAGATTTTCTACAAATTTTCTATCAGATCTGAGGTCCCCAGCTCCTGAGCTTTCATTTGATACCCATATTGACCCATCTAGCTCCTTTTTGCAATTCGGAGCATTTTGGAGCAAAAAGAGCACACGTCATATTTTGCTCAATTTCCACATTTTTTCAGAATGTTCTAGCAGATACAAAGTCCCGAGCTGCTGAGCTTCCGTTTAATACCCATAATGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACATGTTTTATTTTTCTCAATTTTCAGATTTTTCTAGAATTTTCAAGCAGATTTGAAGTTCCGAACTCCTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGAGAGCTCCAAAATGCTCCGAACTTCAAAATTTTAACAAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCCTATATTAGCATTCCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAATAATGCTCCAAAACTCGATTTCAAGATAGACATATTAATATGGAGCTCATTTTAAAGCTTTCAACGTGACAAATTCAAATTTGCTAGTTTCAAATCGCTAACTACCAGCAATCTAGAAAAAAAAACCTTTAAAATATGCAAAAATAAGTAAAAAGAGCACTATTTTGCTCAAAATTCAAAATTCTCAAAGTTTTAATCTAGTAACAGGGTTTTGGGCTCATGAGCTTTAATTTGGTTTTGATATTGTCCTATCTAGCTCATTTTTGACATTTGGAGCATTTTCAGTGCTCTGCGAGCCCAAAAAAAAGTGCTAAAAGACTAAAAATCTGTGTTTTGCGTCAAAAAGGGACTTTTTGAAAAGTGTGAAAAGCCGAAACAATTTGCATAATTTATGAATTTCCATTCAGAAAAATTTCGAAAAAAAATTTTTCTAAAAAAATTTTTCCAGAA</canonical>
            <polymorphic>CGCAGATTTTCTACAAATTTTCTATCAGATCTGAGGTCCCCAGCTCCTGAGCTTTCATTTGATACCCATATTGACCCATCTAGCTCCTTTTTGCAATTCGGAGCATTTTGGAGCAAAAAGAGCACACGTCATATTTTGCTCAATTTCCACATTTTTTCAGAATGTTCTAGCAGATACAAAGTCCCGAGCTGCTGAGCTTCCGTTTAATACCCATAATGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACATGTTTTATTTTTCTCAATTTTCAGATTTTTCTAGAATTTTCAAGCAGATTTGAAGTTCCGAACTCCTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGAGAGCTCCAAAATGCTCCGAACTTCAAAATTTTAACAAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCCTATATTAGCATTYCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAATAATGCTCCAAAACTCGATTTCAAGATAGACATATTAATATGGAGCTCATTTTAAAGCTTTCAACGTGACAAATTCAAATTTGCTAGTTTCAAATCGCTAACTACCAGCAATCTAGAAAAAAAAACCTTTAAAATATGCAAAAATAAGTAAAAAGAGCACTATTTTGCTCAAAATTCAAAATTCTCAAAGTTTTAATCTAGTAACAGGGTTTTGGGCTCATGAGCTTTAATTTGGTTTTGATATTGTCCTATCTAGCTCATTTTTGACATTTGGAGCATTTTCAGTGCTCTGCGAGCCCAAAAAAAAGTGCTAAAAGACTAAAAATCTGTGTTTTGCGTCAAAAAGGGACTTTTTGAAAAGTGTGAAAAGCCGAAACAATTTGCATAATTTATGAATTTCCATTCAGAAAAATTTCGAAAAAAAATTTTTCTAAAAAAATTTTTCCAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTAGAATTTTCAAGCAGATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTAGATTGCTGGTAGTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>370</pcr_amplicon_size>
		<canonical_amplicon>TTCTAGAATTTTCAAGCAGATTTGAAGTTCCGAACTCCTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGAGAGCTCCAAAATGCTCCGAACTTCAAAATTTTAACAAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCCTATATTAGCATTCCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAATAATGCTCCAAAACTCGATTTCAAGATAGACATATTAATATGGAGCTCATTTTAAAGCTTTCAACGTGACAAATTCAAATTTGCTAGTTTCAAATCGCTAACTACCAGCAATCTAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TTCTAGAATTTTCAAGCAGATTTGAAGTTCCGAACTCCTGAGCTTTCGTTTGATACCCATATTGCCCTATTTAGCTCATTTTTGAAATTTGGAGCATTTTGAGAGCTCCAAAATGCTCCGAACTTCAAAATTTTAACAAAACTCCGTTTTATTTAAATTTGTCACGTTACAAGCTGCTAAATGAGCCCTATATTAGCATTYCCAGTCAAAAATTGTGATTTTGAGCATCTTCAGGGATCTCGGAGCACCAATAATGCTCCAAAACTCGATTTCAAGATAGACATATTAATATGGAGCTCATTTTAAAGCTTTCAACGTGACAAATTCAAATTTGCTAGTTTCAAATCGCTAACTACCAGCAATCTAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32960</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>15989</contig_pos>
        <strand></strand>
        <context>AATTTAAAGA[G/A]Atttttgaca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATTTTGAAAATATTCGAAAATTAAGATTTTTGCAAAAAAAATTTAAAGA</left_flank>
        <right_flank>ATTTTTGACAATTTCTTGTTATTTAGCAACTTCCTAGGTTTAAAAAACGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGGCTCAATGGGTTTTGGCACCAAAATTTACGGTCCACAAGGTGAAAAGTTCGATTCCTTCGGGGGTCAACATTTTTTTATTTTTGTGTGGACCCGGAAAATAACTTTCTTAGGCTCATTTGAGGTCCAGAAAGTGGTTTTTTGGAAGTTTGGAAAAAAAATTTTTTTGAAAATTTTTTCGATTTTCAGTTTTTTCAGACAAAATGAGAAAAAATATTTCTACGTCACAAAATGTCTGAATATACTGAAAAAAATTCAAGCTGTCTCCCAGGAAATTAAAAATGGGTACCCCTCACAAATTTTTTTAATTTCCTGTGTTTTTAGAACAAAAAACATAGAAAATAGAGAGGTTTTATGATGAGCAATGACACATCTGGTTCATAAAATTTGGAGAAGAATGAGCAATTTTTCGGAACATCGGAACATCTGGATTTCAAATTTTTTCAAAATTTTGAAAATATTCGAAAATTAAGATTTTTGCAAAAAAAATTTAAAGAGATTTTTGACAATTTCTTGTTATTTAGCAACTTCCTAGGTTTAAAAAACGTCGAAATTTTTAAAAAATTAACTTTAAACTTGAAAAAAACATTAAAAACCGTTGAAAACGTCATTTTTCAAAAAAGTGTGCCAGATGGCTCAGTGGGTTTTGGCACCGAAATTCACGGTCCGCAAGGTCAAAAGTTCGAGTCCTTCTGTGGTCAAAATTTTTTTAGGTCCAGAAAATGGAATTTTCAAAAATAAATCCAATATATATTTTTTCCAAATTTTCGAAAATTTCAAAATTATCAAAAATGGATCGTGTTTAGACTCATTTTGAAGGAAATGTTGTCCTGAATTCAAGTTTTTCCATTAATTTGATTAAAATCCTAATCTTAACTATTTCTCAAGGTCTTAGCACATCTGGAGACAATAAAGCGAGAGACTACATCCTCTTTGAGAGACGCAGAGCAACAATTGGGGTGGCAACGACCTCCAAAACTATCTGACACATTTGATGG</canonical>
            <polymorphic>AATGGCTCAATGGGTTTTGGCACCAAAATTTACGGTCCACAAGGTGAAAAGTTCGATTCCTTCGGGGGTCAACATTTTTTTATTTTTGTGTGGACCCGGAAAATAACTTTCTTAGGCTCATTTGAGGTCCAGAAAGTGGTTTTTTGGAAGTTTGGAAAAAAAATTTTTTTGAAAATTTTTTCGATTTTCAGTTTTTTCAGACAAAATGAGAAAAAATATTTCTACGTCACAAAATGTCTGAATATACTGAAAAAAATTCAAGCTGTCTCCCAGGAAATTAAAAATGGGTACCCCTCACAAATTTTTTTAATTTCCTGTGTTTTTAGAACAAAAAACATAGAAAATAGAGAGGTTTTATGATGAGCAATGACACATCTGGTTCATAAAATTTGGAGAAGAATGAGCAATTTTTCGGAACATCGGAACATCTGGATTTCAAATTTTTTCAAAATTTTGAAAATATTCGAAAATTAAGATTTTTGCAAAAAAAATTTAAAGARATTTTTGACAATTTCTTGTTATTTAGCAACTTCCTAGGTTTAAAAAACGTCGAAATTTTTAAAAAATTAACTTTAAACTTGAAAAAAACATTAAAAACCGTTGAAAACGTCATTTTTCAAAAAAGTGTGCCAGATGGCTCAGTGGGTTTTGGCACCGAAATTCACGGTCCGCAAGGTCAAAAGTTCGAGTCCTTCTGTGGTCAAAATTTTTTTAGGTCCAGAAAATGGAATTTTCAAAAATAAATCCAATATATATTTTTTCCAAATTTTCGAAAATTTCAAAATTATCAAAAATGGATCGTGTTTAGACTCATTTTGAAGGAAATGTTGTCCTGAATTCAAGTTTTTCCATTAATTTGATTAAAATCCTAATCTTAACTATTTCTCAAGGTCTTAGCACATCTGGAGACAATAAAGCGAGAGACTACATCCTCTTTGAGAGACGCAGAGCAACAATTGGGGTGGCAACGACCTCCAAAACTATCTGACACATTTGATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAGAAGAATGAGCAATTT</pcr_primer_p1>
		<pcr_primer_p2>CCTCGGAAAATACGAATAAATA</pcr_primer_p2>
		<pcr_amplicon_size>699</pcr_amplicon_size>
		<canonical_amplicon>TGGAGAAGAATGAGCAATTTTTCGGAACATCGGAACATCTGGATTTCAAATTTTTTCAAAATTTTGAAAATATTCGAAAATTAAGATTTTTGCAAAAAAAATTTAAAGAGATTTTTGACAATTTCTTGTTA</canonical_amplicon>
		<polymorphic_amplicon>TGGAGAAGAATGAGCAATTTTTCGGAACATCGGAACATCTGGATTTCAAATTTTTTCAAAATTTTGAAAATATTCGAAAATTAAGATTTTTGCAAAAAAAATTTAAAGARATTTTTGACAATTTCTTGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32961</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>16049</contig_pos>
        <strand></strand>
        <context>tcgaaatttt[T/C]aaaaaattaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATTTCTTGTTATTTAGCAACTTCCTAGGTTTAAAAAACGTCGAAATTTT</left_flank>
        <right_flank>AAAAAATTAACTTTAAACTTGAAAAAAACATTAAAAACCGTTGAAAACGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGGGGGTCAACATTTTTTTATTTTTGTGTGGACCCGGAAAATAACTTTCTTAGGCTCATTTGAGGTCCAGAAAGTGGTTTTTTGGAAGTTTGGAAAAAAAATTTTTTTGAAAATTTTTTCGATTTTCAGTTTTTTCAGACAAAATGAGAAAAAATATTTCTACGTCACAAAATGTCTGAATATACTGAAAAAAATTCAAGCTGTCTCCCAGGAAATTAAAAATGGGTACCCCTCACAAATTTTTTTAATTTCCTGTGTTTTTAGAACAAAAAACATAGAAAATAGAGAGGTTTTATGATGAGCAATGACACATCTGGTTCATAAAATTTGGAGAAGAATGAGCAATTTTTCGGAACATCGGAACATCTGGATTTCAAATTTTTTCAAAATTTTGAAAATATTCGAAAATTAAGATTTTTGCAAAAAAAATTTAAAGAGATTTTTGACAATTTCTTGTTATTTAGCAACTTCCTAGGTTTAAAAAACGTCGAAATTTTTAAAAAATTAACTTTAAACTTGAAAAAAACATTAAAAACCGTTGAAAACGTCATTTTTCAAAAAAGTGTGCCAGATGGCTCAGTGGGTTTTGGCACCGAAATTCACGGTCCGCAAGGTCAAAAGTTCGAGTCCTTCTGTGGTCAAAATTTTTTTAGGTCCAGAAAATGGAATTTTCAAAAATAAATCCAATATATATTTTTTCCAAATTTTCGAAAATTTCAAAATTATCAAAAATGGATCGTGTTTAGACTCATTTTGAAGGAAATGTTGTCCTGAATTCAAGTTTTTCCATTAATTTGATTAAAATCCTAATCTTAACTATTTCTCAAGGTCTTAGCACATCTGGAGACAATAAAGCGAGAGACTACATCCTCTTTGAGAGACGCAGAGCAACAATTGGGGTGGCAACGACCTCCAAAACTATCTGACACATTTGATGGATGGGACAGTGGAGAGTATTGATTTTCTGGAGAGTGGCAGAGAAAAGGGATGGAAAGGCC</canonical>
            <polymorphic>TTCGGGGGTCAACATTTTTTTATTTTTGTGTGGACCCGGAAAATAACTTTCTTAGGCTCATTTGAGGTCCAGAAAGTGGTTTTTTGGAAGTTTGGAAAAAAAATTTTTTTGAAAATTTTTTCGATTTTCAGTTTTTTCAGACAAAATGAGAAAAAATATTTCTACGTCACAAAATGTCTGAATATACTGAAAAAAATTCAAGCTGTCTCCCAGGAAATTAAAAATGGGTACCCCTCACAAATTTTTTTAATTTCCTGTGTTTTTAGAACAAAAAACATAGAAAATAGAGAGGTTTTATGATGAGCAATGACACATCTGGTTCATAAAATTTGGAGAAGAATGAGCAATTTTTCGGAACATCGGAACATCTGGATTTCAAATTTTTTCAAAATTTTGAAAATATTCGAAAATTAAGATTTTTGCAAAAAAAATTTAAAGAGATTTTTGACAATTTCTTGTTATTTAGCAACTTCCTAGGTTTAAAAAACGTCGAAATTTTYAAAAAATTAACTTTAAACTTGAAAAAAACATTAAAAACCGTTGAAAACGTCATTTTTCAAAAAAGTGTGCCAGATGGCTCAGTGGGTTTTGGCACCGAAATTCACGGTCCGCAAGGTCAAAAGTTCGAGTCCTTCTGTGGTCAAAATTTTTTTAGGTCCAGAAAATGGAATTTTCAAAAATAAATCCAATATATATTTTTTCCAAATTTTCGAAAATTTCAAAATTATCAAAAATGGATCGTGTTTAGACTCATTTTGAAGGAAATGTTGTCCTGAATTCAAGTTTTTCCATTAATTTGATTAAAATCCTAATCTTAACTATTTCTCAAGGTCTTAGCACATCTGGAGACAATAAAGCGAGAGACTACATCCTCTTTGAGAGACGCAGAGCAACAATTGGGGTGGCAACGACCTCCAAAACTATCTGACACATTTGATGGATGGGACAGTGGAGAGTATTGATTTTCTGGAGAGTGGCAGAGAAAAGGGATGGAAAGGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>486 434 47 19 14</canonical_bands>
                <polymorphic_bands>486 434 47 33</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>261 218 185 164 47 29 22 19 18 14 9 8 6</canonical_bands>
                <polymorphic_bands>261 218 185 164 47 29 27 22 18 14 9 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGAGAAGAATGAGCAATTT</pcr_primer_p1>
		<pcr_primer_p2>CCTCGGAAAATACGAATAAATA</pcr_primer_p2>
		<pcr_amplicon_size>699</pcr_amplicon_size>
		<canonical_amplicon>TGGAGAAGAATGAGCAATTTTTCGGAACATCGGAACATCTGGATTTCAAATTTTTTCAAAATTTTGAAAATATTCGAAAATTAAGATTTTTGCAAAAAAAATTTAAAGAGATTTTTGACAATTTCTTGTTATTTAGCAACTTCCTAGGTTTAAAAAACGTCGAAATTTTTAAAAAATTAACTTTAAACTTG</canonical_amplicon>
		<polymorphic_amplicon>TGGAGAAGAATGAGCAATTTTTCGGAACATCGGAACATCTGGATTTCAAATTTTTTCAAAATTTTGAAAATATTCGAAAATTAAGATTTTTGCAAAAAAAATTTAAAGAGATTTTTGACAATTTCTTGTTATTTAGCAACTTCCTAGGTTTAAAAAACGTCGAAATTTTYAAAAAATTAACTTTAAACTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32962</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>16196</contig_pos>
        <strand></strand>
        <context>gtggtcaaaa[T/C]ttttttaGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAAATTCACGGTCCGCAAGGTCAAAAGTTCGAGTCCTTCTGTGGTCAAAA</left_flank>
        <right_flank>TTTTTTAGGTCCAGAAAATGGAATTTTCAAAAATAAATCCAATATATATT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAAAAAATATTTCTACGTCACAAAATGTCTGAATATACTGAAAAAAATTCAAGCTGTCTCCCAGGAAATTAAAAATGGGTACCCCTCACAAATTTTTTTAATTTCCTGTGTTTTTAGAACAAAAAACATAGAAAATAGAGAGGTTTTATGATGAGCAATGACACATCTGGTTCATAAAATTTGGAGAAGAATGAGCAATTTTTCGGAACATCGGAACATCTGGATTTCAAATTTTTTCAAAATTTTGAAAATATTCGAAAATTAAGATTTTTGCAAAAAAAATTTAAAGAGATTTTTGACAATTTCTTGTTATTTAGCAACTTCCTAGGTTTAAAAAACGTCGAAATTTTTAAAAAATTAACTTTAAACTTGAAAAAAACATTAAAAACCGTTGAAAACGTCATTTTTCAAAAAAGTGTGCCAGATGGCTCAGTGGGTTTTGGCACCGAAATTCACGGTCCGCAAGGTCAAAAGTTCGAGTCCTTCTGTGGTCAAAATTTTTTTAGGTCCAGAAAATGGAATTTTCAAAAATAAATCCAATATATATTTTTTCCAAATTTTCGAAAATTTCAAAATTATCAAAAATGGATCGTGTTTAGACTCATTTTGAAGGAAATGTTGTCCTGAATTCAAGTTTTTCCATTAATTTGATTAAAATCCTAATCTTAACTATTTCTCAAGGTCTTAGCACATCTGGAGACAATAAAGCGAGAGACTACATCCTCTTTGAGAGACGCAGAGCAACAATTGGGGTGGCAACGACCTCCAAAACTATCTGACACATTTGATGGATGGGACAGTGGAGAGTATTGATTTTCTGGAGAGTGGCAGAGAAAAGGGATGGAAAGGCCGCCAGAATATTTATTCGTATTTTCCGAGGCTATGTGTGCGGAGGTTGTCTATTGATTTTCCATATATTGTGAGTTTTAGAACTTTCTAGAATAGAAAAATATGAAATCCCTGTTTTTCAGATAGTCTCAACTACGACTTCGTGTGTA</canonical>
            <polymorphic>GAGAAAAAATATTTCTACGTCACAAAATGTCTGAATATACTGAAAAAAATTCAAGCTGTCTCCCAGGAAATTAAAAATGGGTACCCCTCACAAATTTTTTTAATTTCCTGTGTTTTTAGAACAAAAAACATAGAAAATAGAGAGGTTTTATGATGAGCAATGACACATCTGGTTCATAAAATTTGGAGAAGAATGAGCAATTTTTCGGAACATCGGAACATCTGGATTTCAAATTTTTTCAAAATTTTGAAAATATTCGAAAATTAAGATTTTTGCAAAAAAAATTTAAAGAGATTTTTGACAATTTCTTGTTATTTAGCAACTTCCTAGGTTTAAAAAACGTCGAAATTTTTAAAAAATTAACTTTAAACTTGAAAAAAACATTAAAAACCGTTGAAAACGTCATTTTTCAAAAAAGTGTGCCAGATGGCTCAGTGGGTTTTGGCACCGAAATTCACGGTCCGCAAGGTCAAAAGTTCGAGTCCTTCTGTGGTCAAAAYTTTTTTAGGTCCAGAAAATGGAATTTTCAAAAATAAATCCAATATATATTTTTTCCAAATTTTCGAAAATTTCAAAATTATCAAAAATGGATCGTGTTTAGACTCATTTTGAAGGAAATGTTGTCCTGAATTCAAGTTTTTCCATTAATTTGATTAAAATCCTAATCTTAACTATTTCTCAAGGTCTTAGCACATCTGGAGACAATAAAGCGAGAGACTACATCCTCTTTGAGAGACGCAGAGCAACAATTGGGGTGGCAACGACCTCCAAAACTATCTGACACATTTGATGGATGGGACAGTGGAGAGTATTGATTTTCTGGAGAGTGGCAGAGAAAAGGGATGGAAAGGCCGCCAGAATATTTATTCGTATTTTCCGAGGCTATGTGTGCGGAGGTTGTCTATTGATTTTCCATATATTGTGAGTTTTAGAACTTTCTAGAATAGAAAAATATGAAATCCCTGTTTTTCAGATAGTCTCAACTACGACTTCGTGTGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>372 105 87 64 61 52 47 46 45 40 36 24 11 10</canonical_bands>
                <polymorphic_bands>372 105 87 70 64 61 52 47 45 40 36 11 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>253 101 94 78 53 47 46 44 36 33 24 24 21 21 20 19 19 18 11 11 10 9 8</canonical_bands>
                <polymorphic_bands>253 101 94 78 70 53 47 44 36 33 24 21 21 20 19 19 18 11 11 10 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGAGAAGAATGAGCAATTT</pcr_primer_p1>
		<pcr_primer_p2>CCTCGGAAAATACGAATAAATA</pcr_primer_p2>
		<pcr_amplicon_size>699</pcr_amplicon_size>
		<canonical_amplicon>TGGAGAAGAATGAGCAATTTTTCGGAACATCGGAACATCTGGATTTCAAATTTTTTCAAAATTTTGAAAATATTCGAAAATTAAGATTTTTGCAAAAAAAATTTAAAGAGATTTTTGACAATTTCTTGTTATTTAGCAACTTCCTAGGTTTAAAAAACGTCGAAATTTTTAAAAAATTAACTTTAAACTTGAAAAAAACATTAAAAACCGTTGAAAACGTCATTTTTCAAAAAAGTGTGCCAGATGGCTCAGTGGGTTTTGGCACCGAAATTCACGGTCCGCAAGGTCAAAAGTTCGAGTCCTTCTGTGGTCAAAATTTTTTTAGGTCCAGAAAATGGAATTTTCAAAAATAAATCCAATATATATTTTTTCCAAATTTTCGAAAATTTCAAAATTATCAAAAATGGATCGTGTTTAGACTCATTTTGAAGGAAATGTTGTCCTGAATTCAAGTTTTTCCATTAATTTGATTAAAATCCTAATCTTAACTATTTCTCAAGGTCTTAGCACATCTGGAGACAATAAAGCGAGAGACTACATCCTCTTTGAGAGACGCAGAGCAACAATTGGGGTGGCAACGACCTCCAAAACTATCTGACACATTTGATGGATGGGACAGTGGAGAGTATTGATTTTCTGGAGAGTGGCAGAGAAAAGGGATGGAAAGGCCGCCAGAATATTTATTCGTATTTTCCGAGG</canonical_amplicon>
		<polymorphic_amplicon>TGGAGAAGAATGAGCAATTTTTCGGAACATCGGAACATCTGGATTTCAAATTTTTTCAAAATTTTGAAAATATTCGAAAATTAAGATTTTTGCAAAAAAAATTTAAAGAGATTTTTGACAATTTCTTGTTATTTAGCAACTTCCTAGGTTTAAAAAACGTCGAAATTTTTAAAAAATTAACTTTAAACTTGAAAAAAACATTAAAAACCGTTGAAAACGTCATTTTTCAAAAAAGTGTGCCAGATGGCTCAGTGGGTTTTGGCACCGAAATTCACGGTCCGCAAGGTCAAAAGTTCGAGTCCTTCTGTGGTCAAAAYTTTTTTAGGTCCAGAAAATGGAATTTTCAAAAATAAATCCAATATATATTTTTTCCAAATTTTCGAAAATTTCAAAATTATCAAAAATGGATCGTGTTTAGACTCATTTTGAAGGAAATGTTGTCCTGAATTCAAGTTTTTCCATTAATTTGATTAAAATCCTAATCTTAACTATTTCTCAAGGTCTTAGCACATCTGGAGACAATAAAGCGAGAGACTACATCCTCTTTGAGAGACGCAGAGCAACAATTGGGGTGGCAACGACCTCCAAAACTATCTGACACATTTGATGGATGGGACAGTGGAGAGTATTGATTTTCTGGAGAGTGGCAGAGAAAAGGGATGGAAAGGCCGCCAGAATATTTATTCGTATTTTCCGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32963</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>83552</contig_pos>
        <strand>+</strand>
        <context>TTTCAGATTT[A/T]CAGATTAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGAATTGAAGGACAGCGTTGAGCGAATTCCAGTCTGAAAATTTCAGATTT</left_flank>
        <right_flank>CAGATTAAAAATTAAAAATTAGGCTTTAAAACTGAATTTTAGCCCAAAAT</right_flank>
        <qual_score>146</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCATCTGGACACTTTTTCTAAAAATGCTCAAAAATGGATTTTTAGGCAATTTTAGGGGTTTTTAGGGGTTTCTAAGGGATTTTTGATAGTTCTAAACTTATTTTTGTGGTTCAAAAGTCTCAAAAAGGACATTTCCAAACAGTTTTTTCGGGTCAAATTTGACCAAAAAAGATTTTATTCACTATCAGGCTAATTTTCGTCTTGAAACTTCAATTTTTGCTAAAAATGCTCAAATAAAGTTTGGAAAACGTCATTTTTTTTCTATTTTCAACTAGGGAGAAAAAGACACTTACCTCCATCGCGATTCTCATCCATAATCCATTTTGGCGTTTTTCCATTTTTGTACAATTTGATAATTCCCATTCTTATCACCGTTTGGTTCACTTCAAAACACGATTCATCCGTTTCGAAATATTCAAATTTTTGAGGAATTAATTTGTTGATATTTCGAATTGAAGGACAGCGTTGAGCGAATTCCAGTCTGAAAATTTCAGATTTACAGATTAAAAATTAAAAATTAGGCTTTAAAACTGAATTTTAGCCCAAAATTGGTAATTTTTGACTTTAAACAACTCCAGAACAAAAAAATCTCACCTAACCATTGGATCCATAAATGACAATATTGATTTTTGGGCTTCATACGGTACCGGCTTGCTCAATGACATCTGAATTTAGAATTTCCAGATTTTTTCAAAAAATTTTTTTTTGTAAAAAAGGTTCCAAACGAGCTAAAAATCAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATCGAACTTTTGGCCTTCTGCACCGTAAATTTCGGTGCGAAAACCCACTGAGCCATTTGGCACAATTTTTTGAAAAACGCGTTTTTTGGCTGCTTTCGACCGTTTTTTATGGATTTTTTGGTTTTTGTGCTGTTTTGGATACTTTTTTTCATCATTTTAAGCATAATTCGGCAAAAAAATTTCAGCAAAATTTCTTTTTCCAAAATTTCAAA</canonical>
            <polymorphic>GCCATCTGGACACTTTTTCTAAAAATGCTCAAAAATGGATTTTTAGGCAATTTTAGGGGTTTTTAGGGGTTTCTAAGGGATTTTTGATAGTTCTAAACTTATTTTTGTGGTTCAAAAGTCTCAAAAAGGACATTTCCAAACAGTTTTTTCGGGTCAAATTTGACCAAAAAAGATTTTATTCACTATCAGGCTAATTTTCGTCTTGAAACTTCAATTTTTGCTAAAAATGCTCAAATAAAGTTTGGAAAACGTCATTTTTTTTCTATTTTCAACTAGGGAGAAAAAGACACTTACCTCCATCGCGATTCTCATCCATAATCCATTTTGGCGTTTTTCCATTTTTGTACAATTTGATAATTCCCATTCTTATCACCGTTTGGTTCACTTCAAAACACGATTCATCCGTTTCGAAATATTCAAATTTTTGAGGAATTAATTTGTTGATATTTCGAATTGAAGGACAGCGTTGAGCGAATTCCAGTCTGAAAATTTCAGATTTWCAGATTAAAAATTAAAAATTAGGCTTTAAAACTGAATTTTAGCCCAAAATTGGTAATTTTTGACTTTAAACAACTCCAGAACAAAAAAATCTCACCTAACCATTGGATCCATAAATGACAATATTGATTTTTGGGCTTCATACGGTACCGGCTTGCTCAATGACATCTGAATTTAGAATTTCCAGATTTTTTCAAAAAATTTTTTTTTGTAAAAAAGGTTCCAAACGAGCTAAAAATCAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATCGAACTTTTGGCCTTCTGCACCGTAAATTTCGGTGCGAAAACCCACTGAGCCATTTGGCACAATTTTTTGAAAAACGCGTTTTTTGGCTGCTTTCGACCGTTTTTTATGGATTTTTTGGTTTTTGTGCTGTTTTGGATACTTTTTTTCATCATTTTAAGCATAATTCGGCAAAAAAATTTCAGCAAAATTTCTTTTTCCAAAATTTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCATTTTTGTACAATTTGAT</pcr_primer_p1>
		<pcr_primer_p2>GTTCTGGAGTTGTTTAAAGTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCCATTTTTGTACAATTTGATAATTCCCATTCTTATCACCGTTTGGTTCACTTCAAAACACGATTCATCCGTTTCGAAATATTCAAATTTTTGAGGAATTAATTTGTTGATATTTCGAATTGAAGGACAGCGTTGAGCGAATTCCAGTCTGAAAATTTCAGATTTACAGATTAAAAATTAAAAATTAGGCTTTAAAACTGAATTTTAGCCCAAAATTGGTAATTTTTGACTTTAAACAACTCCAGAAC</canonical_amplicon>
		<polymorphic_amplicon>TTTCCATTTTTGTACAATTTGATAATTCCCATTCTTATCACCGTTTGGTTCACTTCAAAACACGATTCATCCGTTTCGAAATATTCAAATTTTTGAGGAATTAATTTGTTGATATTTCGAATTGAAGGACAGCGTTGAGCGAATTCCAGTCTGAAAATTTCAGATTTWCAGATTAAAAATTAAAAATTAGGCTTTAAAACTGAATTTTAGCCCAAAATTGGTAATTTTTGACTTTAAACAACTCCAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32964</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>83575</contig_pos>
        <strand>+</strand>
        <context>TAAAAATTAG[G/T]CTTTAAAACT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAATTCCAGTCTGAAAATTTCAGATTTACAGATTAAAAATTAAAAATTAG</left_flank>
        <right_flank>CTTTAAAACTGAATTTTAGCCCAAAATTGGTAATTTTTGACTTTAAACAA</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGCTCAAAAATGGATTTTTAGGCAATTTTAGGGGTTTTTAGGGGTTTCTAAGGGATTTTTGATAGTTCTAAACTTATTTTTGTGGTTCAAAAGTCTCAAAAAGGACATTTCCAAACAGTTTTTTCGGGTCAAATTTGACCAAAAAAGATTTTATTCACTATCAGGCTAATTTTCGTCTTGAAACTTCAATTTTTGCTAAAAATGCTCAAATAAAGTTTGGAAAACGTCATTTTTTTTCTATTTTCAACTAGGGAGAAAAAGACACTTACCTCCATCGCGATTCTCATCCATAATCCATTTTGGCGTTTTTCCATTTTTGTACAATTTGATAATTCCCATTCTTATCACCGTTTGGTTCACTTCAAAACACGATTCATCCGTTTCGAAATATTCAAATTTTTGAGGAATTAATTTGTTGATATTTCGAATTGAAGGACAGCGTTGAGCGAATTCCAGTCTGAAAATTTCAGATTTACAGATTAAAAATTAAAAATTAGGCTTTAAAACTGAATTTTAGCCCAAAATTGGTAATTTTTGACTTTAAACAACTCCAGAACAAAAAAATCTCACCTAACCATTGGATCCATAAATGACAATATTGATTTTTGGGCTTCATACGGTACCGGCTTGCTCAATGACATCTGAATTTAGAATTTCCAGATTTTTTCAAAAAATTTTTTTTTGTAAAAAAGGTTCCAAACGAGCTAAAAATCAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATCGAACTTTTGGCCTTCTGCACCGTAAATTTCGGTGCGAAAACCCACTGAGCCATTTGGCACAATTTTTTGAAAAACGCGTTTTTTGGCTGCTTTCGACCGTTTTTTATGGATTTTTTGGTTTTTGTGCTGTTTTGGATACTTTTTTTCATCATTTTAAGCATAATTCGGCAAAAAAATTTCAGCAAAATTTCTTTTTCCAAAATTTCAAAAAATTAATTTCCAGACATTTTCA</canonical>
            <polymorphic>AATGCTCAAAAATGGATTTTTAGGCAATTTTAGGGGTTTTTAGGGGTTTCTAAGGGATTTTTGATAGTTCTAAACTTATTTTTGTGGTTCAAAAGTCTCAAAAAGGACATTTCCAAACAGTTTTTTCGGGTCAAATTTGACCAAAAAAGATTTTATTCACTATCAGGCTAATTTTCGTCTTGAAACTTCAATTTTTGCTAAAAATGCTCAAATAAAGTTTGGAAAACGTCATTTTTTTTCTATTTTCAACTAGGGAGAAAAAGACACTTACCTCCATCGCGATTCTCATCCATAATCCATTTTGGCGTTTTTCCATTTTTGTACAATTTGATAATTCCCATTCTTATCACCGTTTGGTTCACTTCAAAACACGATTCATCCGTTTCGAAATATTCAAATTTTTGAGGAATTAATTTGTTGATATTTCGAATTGAAGGACAGCGTTGAGCGAATTCCAGTCTGAAAATTTCAGATTTACAGATTAAAAATTAAAAATTAGKCTTTAAAACTGAATTTTAGCCCAAAATTGGTAATTTTTGACTTTAAACAACTCCAGAACAAAAAAATCTCACCTAACCATTGGATCCATAAATGACAATATTGATTTTTGGGCTTCATACGGTACCGGCTTGCTCAATGACATCTGAATTTAGAATTTCCAGATTTTTTCAAAAAATTTTTTTTTGTAAAAAAGGTTCCAAACGAGCTAAAAATCAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATCGAACTTTTGGCCTTCTGCACCGTAAATTTCGGTGCGAAAACCCACTGAGCCATTTGGCACAATTTTTTGAAAAACGCGTTTTTTGGCTGCTTTCGACCGTTTTTTATGGATTTTTTGGTTTTTGTGCTGTTTTGGATACTTTTTTTCATCATTTTAAGCATAATTCGGCAAAAAAATTTCAGCAAAATTTCTTTTTCCAAAATTTCAAAAAATTAATTTCCAGACATTTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>333 167 146 93 78 52 39 37 20 19 16</canonical_bands>
                <polymorphic_bands>352 167 146 93 78 52 39 37 20 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCCATTTTTGTACAATTTGAT</pcr_primer_p1>
		<pcr_primer_p2>GTTCTGGAGTTGTTTAAAGTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCCATTTTTGTACAATTTGATAATTCCCATTCTTATCACCGTTTGGTTCACTTCAAAACACGATTCATCCGTTTCGAAATATTCAAATTTTTGAGGAATTAATTTGTTGATATTTCGAATTGAAGGACAGCGTTGAGCGAATTCCAGTCTGAAAATTTCAGATTTACAGATTAAAAATTAAAAATTAGGCTTTAAAACTGAATTTTAGCCCAAAATTGGTAATTTTTGACTTTAAACAACTCCAGAAC</canonical_amplicon>
		<polymorphic_amplicon>TTTCCATTTTTGTACAATTTGATAATTCCCATTCTTATCACCGTTTGGTTCACTTCAAAACACGATTCATCCGTTTCGAAATATTCAAATTTTTGAGGAATTAATTTGTTGATATTTCGAATTGAAGGACAGCGTTGAGCGAATTCCAGTCTGAAAATTTCAGATTTACAGATTAAAAATTAAAAATTAGKCTTTAAAACTGAATTTTAGCCCAAAATTGGTAATTTTTGACTTTAAACAACTCCAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32965</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>83712</contig_pos>
        <strand>+</strand>
        <context>GGCTTGCTCA[A/G]TGACATCTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATAAATGACAATATTGATTTTTGGGCTTCATACGGTACCGGCTTGCTCA</left_flank>
        <right_flank>TGACATCTGAATTTAGAATTTCCAGATTTTTTCAAAAAATTTTTTTTTGT</right_flank>
        <qual_score>148</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACCAAAAAAGATTTTATTCACTATCAGGCTAATTTTCGTCTTGAAACTTCAATTTTTGCTAAAAATGCTCAAATAAAGTTTGGAAAACGTCATTTTTTTTCTATTTTCAACTAGGGAGAAAAAGACACTTACCTCCATCGCGATTCTCATCCATAATCCATTTTGGCGTTTTTCCATTTTTGTACAATTTGATAATTCCCATTCTTATCACCGTTTGGTTCACTTCAAAACACGATTCATCCGTTTCGAAATATTCAAATTTTTGAGGAATTAATTTGTTGATATTTCGAATTGAAGGACAGCGTTGAGCGAATTCCAGTCTGAAAATTTCAGATTTACAGATTAAAAATTAAAAATTAGGCTTTAAAACTGAATTTTAGCCCAAAATTGGTAATTTTTGACTTTAAACAACTCCAGAACAAAAAAATCTCACCTAACCATTGGATCCATAAATGACAATATTGATTTTTGGGCTTCATACGGTACCGGCTTGCTCAATGACATCTGAATTTAGAATTTCCAGATTTTTTCAAAAAATTTTTTTTTGTAAAAAAGGTTCCAAACGAGCTAAAAATCAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATCGAACTTTTGGCCTTCTGCACCGTAAATTTCGGTGCGAAAACCCACTGAGCCATTTGGCACAATTTTTTGAAAAACGCGTTTTTTGGCTGCTTTCGACCGTTTTTTATGGATTTTTTGGTTTTTGTGCTGTTTTGGATACTTTTTTTCATCATTTTAAGCATAATTCGGCAAAAAAATTTCAGCAAAATTTCTTTTTCCAAAATTTCAAAAAATTAATTTCCAGACATTTTCATGGTCCTAATACTGAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATTGAACTTCTGGCCCTTGGCACACTTTTTTGAAAAACGCGTTTTTTGGCTGTTCTTAGCGAATTTTTAGTGT</canonical>
            <polymorphic>TGACCAAAAAAGATTTTATTCACTATCAGGCTAATTTTCGTCTTGAAACTTCAATTTTTGCTAAAAATGCTCAAATAAAGTTTGGAAAACGTCATTTTTTTTCTATTTTCAACTAGGGAGAAAAAGACACTTACCTCCATCGCGATTCTCATCCATAATCCATTTTGGCGTTTTTCCATTTTTGTACAATTTGATAATTCCCATTCTTATCACCGTTTGGTTCACTTCAAAACACGATTCATCCGTTTCGAAATATTCAAATTTTTGAGGAATTAATTTGTTGATATTTCGAATTGAAGGACAGCGTTGAGCGAATTCCAGTCTGAAAATTTCAGATTTACAGATTAAAAATTAAAAATTAGGCTTTAAAACTGAATTTTAGCCCAAAATTGGTAATTTTTGACTTTAAACAACTCCAGAACAAAAAAATCTCACCTAACCATTGGATCCATAAATGACAATATTGATTTTTGGGCTTCATACGGTACCGGCTTGCTCARTGACATCTGAATTTAGAATTTCCAGATTTTTTCAAAAAATTTTTTTTTGTAAAAAAGGTTCCAAACGAGCTAAAAATCAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATCGAACTTTTGGCCTTCTGCACCGTAAATTTCGGTGCGAAAACCCACTGAGCCATTTGGCACAATTTTTTGAAAAACGCGTTTTTTGGCTGCTTTCGACCGTTTTTTATGGATTTTTTGGTTTTTGTGCTGTTTTGGATACTTTTTTTCATCATTTTAAGCATAATTCGGCAAAAAAATTTCAGCAAAATTTCTTTTTCCAAAATTTCAAAAAATTAATTTCCAGACATTTTCATGGTCCTAATACTGAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATTGAACTTCTGGCCCTTGGCACACTTTTTTGAAAAACGCGTTTTTTGGCTGTTCTTAGCGAATTTTTAGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTGGATCCATAAATGACAA</pcr_primer_p1>
		<pcr_primer_p2>CGAATTATGCTTAAAATGATGAA</pcr_primer_p2>
		<pcr_amplicon_size>358</pcr_amplicon_size>
		<canonical_amplicon>CATTGGATCCATAAATGACAATATTGATTTTTGGGCTTCATACGGTACCGGCTTGCTCAATGACATCTGAATTTAGAATTTCCAGATTTTTTCAAAAAATTTTTTTTTGTAAAAAAGGTTCCAAACGAGCTAAAAATCAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATCGAACTTTTGGCCTTCTGCACCGTAAATTTCGGTGCGAAAACCCACTGAGCCATTTGGCACAATTTTTTGAAAAACGCGTTTTTTGGCTGCTTTCGACCGTTTTTTATGGATTTTTTGGTTTTTGTGCTGTTTTGGATACTTTTTTTCATCATTTTAAGCATAATTCG</canonical_amplicon>
		<polymorphic_amplicon>CATTGGATCCATAAATGACAATATTGATTTTTGGGCTTCATACGGTACCGGCTTGCTCARTGACATCTGAATTTAGAATTTCCAGATTTTTTCAAAAAATTTTTTTTTGTAAAAAAGGTTCCAAACGAGCTAAAAATCAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATCGAACTTTTGGCCTTCTGCACCGTAAATTTCGGTGCGAAAACCCACTGAGCCATTTGGCACAATTTTTTGAAAAACGCGTTTTTTGGCTGCTTTCGACCGTTTTTTATGGATTTTTTGGTTTTTGTGCTGTTTTGGATACTTTTTTTCATCATTTTAAGCATAATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32966</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>83774</contig_pos>
        <strand></strand>
        <context>aaaaaggttc[C/A]aaacgagcta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTAGAATTTCCAGATTTTTTCAAAAAATTTTTTTTTGTAAAAAAGGTTC</left_flank>
        <right_flank>AAACGAGCTAAAAATCAATTTTTCTAGCTCCGCACAAAAATAAAAAAATG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATGCTCAAATAAAGTTTGGAAAACGTCATTTTTTTTCTATTTTCAACTAGGGAGAAAAAGACACTTACCTCCATCGCGATTCTCATCCATAATCCATTTTGGCGTTTTTCCATTTTTGTACAATTTGATAATTCCCATTCTTATCACCGTTTGGTTCACTTCAAAACACGATTCATCCGTTTCGAAATATTCAAATTTTTGAGGAATTAATTTGTTGATATTTCGAATTGAAGGACAGCGTTGAGCGAATTCCAGTCTGAAAATTTCAGATTTACAGATTAAAAATTAAAAATTAGGCTTTAAAACTGAATTTTAGCCCAAAATTGGTAATTTTTGACTTTAAACAACTCCAGAACAAAAAAATCTCACCTAACCATTGGATCCATAAATGACAATATTGATTTTTGGGCTTCATACGGTACCGGCTTGCTCAATGACATCTGAATTTAGAATTTCCAGATTTTTTCAAAAAATTTTTTTTTGTAAAAAAGGTTCCAAACGAGCTAAAAATCAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATCGAACTTTTGGCCTTCTGCACCGTAAATTTCGGTGCGAAAACCCACTGAGCCATTTGGCACAATTTTTTGAAAAACGCGTTTTTTGGCTGCTTTCGACCGTTTTTTATGGATTTTTTGGTTTTTGTGCTGTTTTGGATACTTTTTTTCATCATTTTAAGCATAATTCGGCAAAAAAATTTCAGCAAAATTTCTTTTTCCAAAATTTCAAAAAATTAATTTCCAGACATTTTCATGGTCCTAATACTGAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATTGAACTTCTGGCCCTTGGCACACTTTTTTGAAAAACGCGTTTTTTGGCTGTTCTTAGCGAATTTTTAGTGTTTTAGTTAATTTTTTTGCGAAATGTAAGATTTTTTCGACAGAAAAAAGGCAAAAATAGGTTC</canonical>
            <polymorphic>AAAAATGCTCAAATAAAGTTTGGAAAACGTCATTTTTTTTCTATTTTCAACTAGGGAGAAAAAGACACTTACCTCCATCGCGATTCTCATCCATAATCCATTTTGGCGTTTTTCCATTTTTGTACAATTTGATAATTCCCATTCTTATCACCGTTTGGTTCACTTCAAAACACGATTCATCCGTTTCGAAATATTCAAATTTTTGAGGAATTAATTTGTTGATATTTCGAATTGAAGGACAGCGTTGAGCGAATTCCAGTCTGAAAATTTCAGATTTACAGATTAAAAATTAAAAATTAGGCTTTAAAACTGAATTTTAGCCCAAAATTGGTAATTTTTGACTTTAAACAACTCCAGAACAAAAAAATCTCACCTAACCATTGGATCCATAAATGACAATATTGATTTTTGGGCTTCATACGGTACCGGCTTGCTCAATGACATCTGAATTTAGAATTTCCAGATTTTTTCAAAAAATTTTTTTTTGTAAAAAAGGTTCMAAACGAGCTAAAAATCAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATCGAACTTTTGGCCTTCTGCACCGTAAATTTCGGTGCGAAAACCCACTGAGCCATTTGGCACAATTTTTTGAAAAACGCGTTTTTTGGCTGCTTTCGACCGTTTTTTATGGATTTTTTGGTTTTTGTGCTGTTTTGGATACTTTTTTTCATCATTTTAAGCATAATTCGGCAAAAAAATTTCAGCAAAATTTCTTTTTCCAAAATTTCAAAAAATTAATTTCCAGACATTTTCATGGTCCTAATACTGAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATTGAACTTCTGGCCCTTGGCACACTTTTTTGAAAAACGCGTTTTTTGGCTGTTCTTAGCGAATTTTTAGTGTTTTAGTTAATTTTTTTGCGAAATGTAAGATTTTTTCGACAGAAAAAAGGCAAAAATAGGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>503 385 73 39</canonical_bands>
                <polymorphic_bands>576 385 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTGATTTTTGGGCTTCATAC</pcr_primer_p1>
		<pcr_primer_p2>CGAATTATGCTTAAAATGATGA</pcr_primer_p2>
		<pcr_amplicon_size>337</pcr_amplicon_size>
		<canonical_amplicon>TATTGATTTTTGGGCTTCATACGGTACCGGCTTGCTCAATGACATCTGAATTTAGAATTTCCAGATTTTTTCAAAAAATTTTTTTTTGTAAAAAAGGTTCCAAACGAGCTAAAAATCAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATCGAACTTTTGGCCTTCTGCACCGTAAATTTCGGTGCGAAAACCCACTGAGCCATTTGGCACAATTTTTTGAAAAACGCGTTTTTTGGCTGCTTTCGACCGTTTTTTATGGATTTTTTGGTTTTTGTGCTGTTTTGGATACTTTTTTTCATCATTTTAAGCATAATTCG</canonical_amplicon>
		<polymorphic_amplicon>TATTGATTTTTGGGCTTCATACGGTACCGGCTTGCTCAATGACATCTGAATTTAGAATTTCCAGATTTTTTCAAAAAATTTTTTTTTGTAAAAAAGGTTCMAAACGAGCTAAAAATCAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATCGAACTTTTGGCCTTCTGCACCGTAAATTTCGGTGCGAAAACCCACTGAGCCATTTGGCACAATTTTTTGAAAAACGCGTTTTTTGGCTGCTTTCGACCGTTTTTTATGGATTTTTTGGTTTTTGTGCTGTTTTGGATACTTTTTTTCATCATTTTAAGCATAATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32967</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>83843</contig_pos>
        <strand></strand>
        <context>aggaaggaat[C/T]gaacttytgg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAAT</left_flank>
        <right_flank>GAACTTTTGGCCTTCTGCACCGTAAATTTCGGTGCGAAAACCCACTGAGC</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACCTCCATCGCGATTCTCATCCATAATCCATTTTGGCGTTTTTCCATTTTTGTACAATTTGATAATTCCCATTCTTATCACCGTTTGGTTCACTTCAAAACACGATTCATCCGTTTCGAAATATTCAAATTTTTGAGGAATTAATTTGTTGATATTTCGAATTGAAGGACAGCGTTGAGCGAATTCCAGTCTGAAAATTTCAGATTTACAGATTAAAAATTAAAAATTAGGCTTTAAAACTGAATTTTAGCCCAAAATTGGTAATTTTTGACTTTAAACAACTCCAGAACAAAAAAATCTCACCTAACCATTGGATCCATAAATGACAATATTGATTTTTGGGCTTCATACGGTACCGGCTTGCTCAATGACATCTGAATTTAGAATTTCCAGATTTTTTCAAAAAATTTTTTTTTGTAAAAAAGGTTCCAAACGAGCTAAAAATCAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATCGAACTTTTGGCCTTCTGCACCGTAAATTTCGGTGCGAAAACCCACTGAGCCATTTGGCACAATTTTTTGAAAAACGCGTTTTTTGGCTGCTTTCGACCGTTTTTTATGGATTTTTTGGTTTTTGTGCTGTTTTGGATACTTTTTTTCATCATTTTAAGCATAATTCGGCAAAAAAATTTCAGCAAAATTTCTTTTTCCAAAATTTCAAAAAATTAATTTCCAGACATTTTCATGGTCCTAATACTGAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATTGAACTTCTGGCCCTTGGCACACTTTTTTGAAAAACGCGTTTTTTGGCTGTTCTTAGCGAATTTTTAGTGTTTTAGTTAATTTTTTTGCGAAATGTAAGATTTTTTCGACAGAAAAAAGGCAAAAATAGGTTCAAAATCTATTGAAATTGTGGTTTTAAAGACATTTTGAGACTAGAAAAGTCATAAAAACAGCTGAAACAG</canonical>
            <polymorphic>TACCTCCATCGCGATTCTCATCCATAATCCATTTTGGCGTTTTTCCATTTTTGTACAATTTGATAATTCCCATTCTTATCACCGTTTGGTTCACTTCAAAACACGATTCATCCGTTTCGAAATATTCAAATTTTTGAGGAATTAATTTGTTGATATTTCGAATTGAAGGACAGCGTTGAGCGAATTCCAGTCTGAAAATTTCAGATTTACAGATTAAAAATTAAAAATTAGGCTTTAAAACTGAATTTTAGCCCAAAATTGGTAATTTTTGACTTTAAACAACTCCAGAACAAAAAAATCTCACCTAACCATTGGATCCATAAATGACAATATTGATTTTTGGGCTTCATACGGTACCGGCTTGCTCAATGACATCTGAATTTAGAATTTCCAGATTTTTTCAAAAAATTTTTTTTTGTAAAAAAGGTTCCAAACGAGCTAAAAATCAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATYGAACTTTTGGCCTTCTGCACCGTAAATTTCGGTGCGAAAACCCACTGAGCCATTTGGCACAATTTTTTGAAAAACGCGTTTTTTGGCTGCTTTCGACCGTTTTTTATGGATTTTTTGGTTTTTGTGCTGTTTTGGATACTTTTTTTCATCATTTTAAGCATAATTCGGCAAAAAAATTTCAGCAAAATTTCTTTTTCCAAAATTTCAAAAAATTAATTTCCAGACATTTTCATGGTCCTAATACTGAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATTGAACTTCTGGCCCTTGGCACACTTTTTTGAAAAACGCGTTTTTTGGCTGTTCTTAGCGAATTTTTAGTGTTTTAGTTAATTTTTTTGCGAAATGTAAGATTTTTTCGACAGAAAAAAGGCAAAAATAGGTTCAAAATCTATTGAAATTGTGGTTTTAAAGACATTTTGAGACTAGAAAAGTCATAAAAACAGCTGAAACAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>341 311 118 95 94 41</canonical_bands>
                <polymorphic_bands>435 311 118 95 41</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>504 391 92 13</canonical_bands>
                <polymorphic_bands>895 92 13</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>504 391 92 13</canonical_bands>
                <polymorphic_bands>895 92 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTGATTTTTGGGCTTCATAC</pcr_primer_p1>
		<pcr_primer_p2>CGAATTATGCTTAAAATGATGA</pcr_primer_p2>
		<pcr_amplicon_size>337</pcr_amplicon_size>
		<canonical_amplicon>TATTGATTTTTGGGCTTCATACGGTACCGGCTTGCTCAATGACATCTGAATTTAGAATTTCCAGATTTTTTCAAAAAATTTTTTTTTGTAAAAAAGGTTCCAAACGAGCTAAAAATCAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATCGAACTTTTGGCCTTCTGCACCGTAAATTTCGGTGCGAAAACCCACTGAGCCATTTGGCACAATTTTTTGAAAAACGCGTTTTTTGGCTGCTTTCGACCGTTTTTTATGGATTTTTTGGTTTTTGTGCTGTTTTGGATACTTTTTTTCATCATTTTAAGCATAATTCG</canonical_amplicon>
		<polymorphic_amplicon>TATTGATTTTTGGGCTTCATACGGTACCGGCTTGCTCAATGACATCTGAATTTAGAATTTCCAGATTTTTTCAAAAAATTTTTTTTTGTAAAAAAGGTTCCAAACGAGCTAAAAATCAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATYGAACTTTTGGCCTTCTGCACCGTAAATTTCGGTGCGAAAACCCACTGAGCCATTTGGCACAATTTTTTGAAAAACGCGTTTTTTGGCTGCTTTCGACCGTTTTTTATGGATTTTTTGGTTTTTGTGCTGTTTTGGATACTTTTTTTCATCATTTTAAGCATAATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32968</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>83850</contig_pos>
        <strand></strand>
        <context>aatygaactt[T/C]tggccttcwg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATCGAACTT</left_flank>
        <right_flank>TGGCCTTCTGCACCGTAAATTTCGGTGCGAAAACCCACTGAGCCATTTGG</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGCGATTCTCATCCATAATCCATTTTGGCGTTTTTCCATTTTTGTACAATTTGATAATTCCCATTCTTATCACCGTTTGGTTCACTTCAAAACACGATTCATCCGTTTCGAAATATTCAAATTTTTGAGGAATTAATTTGTTGATATTTCGAATTGAAGGACAGCGTTGAGCGAATTCCAGTCTGAAAATTTCAGATTTACAGATTAAAAATTAAAAATTAGGCTTTAAAACTGAATTTTAGCCCAAAATTGGTAATTTTTGACTTTAAACAACTCCAGAACAAAAAAATCTCACCTAACCATTGGATCCATAAATGACAATATTGATTTTTGGGCTTCATACGGTACCGGCTTGCTCAATGACATCTGAATTTAGAATTTCCAGATTTTTTCAAAAAATTTTTTTTTGTAAAAAAGGTTCCAAACGAGCTAAAAATCAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATCGAACTTTTGGCCTTCTGCACCGTAAATTTCGGTGCGAAAACCCACTGAGCCATTTGGCACAATTTTTTGAAAAACGCGTTTTTTGGCTGCTTTCGACCGTTTTTTATGGATTTTTTGGTTTTTGTGCTGTTTTGGATACTTTTTTTCATCATTTTAAGCATAATTCGGCAAAAAAATTTCAGCAAAATTTCTTTTTCCAAAATTTCAAAAAATTAATTTCCAGACATTTTCATGGTCCTAATACTGAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATTGAACTTCTGGCCCTTGGCACACTTTTTTGAAAAACGCGTTTTTTGGCTGTTCTTAGCGAATTTTTAGTGTTTTAGTTAATTTTTTTGCGAAATGTAAGATTTTTTCGACAGAAAAAAGGCAAAAATAGGTTCAAAATCTATTGAAATTGTGGTTTTAAAGACATTTTGAGACTAGAAAAGTCATAAAAACAGCTGAAACAGAATAAAT</canonical>
            <polymorphic>ATCGCGATTCTCATCCATAATCCATTTTGGCGTTTTTCCATTTTTGTACAATTTGATAATTCCCATTCTTATCACCGTTTGGTTCACTTCAAAACACGATTCATCCGTTTCGAAATATTCAAATTTTTGAGGAATTAATTTGTTGATATTTCGAATTGAAGGACAGCGTTGAGCGAATTCCAGTCTGAAAATTTCAGATTTACAGATTAAAAATTAAAAATTAGGCTTTAAAACTGAATTTTAGCCCAAAATTGGTAATTTTTGACTTTAAACAACTCCAGAACAAAAAAATCTCACCTAACCATTGGATCCATAAATGACAATATTGATTTTTGGGCTTCATACGGTACCGGCTTGCTCAATGACATCTGAATTTAGAATTTCCAGATTTTTTCAAAAAATTTTTTTTTGTAAAAAAGGTTCCAAACGAGCTAAAAATCAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATCGAACTTYTGGCCTTCTGCACCGTAAATTTCGGTGCGAAAACCCACTGAGCCATTTGGCACAATTTTTTGAAAAACGCGTTTTTTGGCTGCTTTCGACCGTTTTTTATGGATTTTTTGGTTTTTGTGCTGTTTTGGATACTTTTTTTCATCATTTTAAGCATAATTCGGCAAAAAAATTTCAGCAAAATTTCTTTTTCCAAAATTTCAAAAAATTAATTTCCAGACATTTTCATGGTCCTAATACTGAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATTGAACTTCTGGCCCTTGGCACACTTTTTTGAAAAACGCGTTTTTTGGCTGTTCTTAGCGAATTTTTAGTGTTTTAGTTAATTTTTTTGCGAAATGTAAGATTTTTTCGACAGAAAAAAGGCAAAAATAGGTTCAAAATCTATTGAAATTGTGGTTTTAAAGACATTTTGAGACTAGAAAAGTCATAAAAACAGCTGAAACAGAATAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTGATTTTTGGGCTTCATAC</pcr_primer_p1>
		<pcr_primer_p2>CGAATTATGCTTAAAATGATGA</pcr_primer_p2>
		<pcr_amplicon_size>337</pcr_amplicon_size>
		<canonical_amplicon>TATTGATTTTTGGGCTTCATACGGTACCGGCTTGCTCAATGACATCTGAATTTAGAATTTCCAGATTTTTTCAAAAAATTTTTTTTTGTAAAAAAGGTTCCAAACGAGCTAAAAATCAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATCGAACTTTTGGCCTTCTGCACCGTAAATTTCGGTGCGAAAACCCACTGAGCCATTTGGCACAATTTTTTGAAAAACGCGTTTTTTGGCTGCTTTCGACCGTTTTTTATGGATTTTTTGGTTTTTGTGCTGTTTTGGATACTTTTTTTCATCATTTTAAGCATAATTCG</canonical_amplicon>
		<polymorphic_amplicon>TATTGATTTTTGGGCTTCATACGGTACCGGCTTGCTCAATGACATCTGAATTTAGAATTTCCAGATTTTTTCAAAAAATTTTTTTTTGTAAAAAAGGTTCCAAACGAGCTAAAAATCAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATCGAACTTYTGGCCTTCTGCACCGTAAATTTCGGTGCGAAAACCCACTGAGCCATTTGGCACAATTTTTTGAAAAACGCGTTTTTTGGCTGCTTTCGACCGTTTTTTATGGATTTTTTGGTTTTTGTGCTGTTTTGGATACTTTTTTTCATCATTTTAAGCATAATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32969</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>83859</contig_pos>
        <strand></strand>
        <context>tytggccttc[T/A]gcaccgtaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CAAAAATAAAAAAATGTTGAACCCAGGAAGGAATCGAACTTTTGGCCTTC</left_flank>
        <right_flank>GCACCGTAAATTTCGGTGCGAAAACCCACTGAGCCATTTGGCACAATTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCATCCATAATCCATTTTGGCGTTTTTCCATTTTTGTACAATTTGATAATTCCCATTCTTATCACCGTTTGGTTCACTTCAAAACACGATTCATCCGTTTCGAAATATTCAAATTTTTGAGGAATTAATTTGTTGATATTTCGAATTGAAGGACAGCGTTGAGCGAATTCCAGTCTGAAAATTTCAGATTTACAGATTAAAAATTAAAAATTAGGCTTTAAAACTGAATTTTAGCCCAAAATTGGTAATTTTTGACTTTAAACAACTCCAGAACAAAAAAATCTCACCTAACCATTGGATCCATAAATGACAATATTGATTTTTGGGCTTCATACGGTACCGGCTTGCTCAATGACATCTGAATTTAGAATTTCCAGATTTTTTCAAAAAATTTTTTTTTGTAAAAAAGGTTCCAAACGAGCTAAAAATCAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATCGAACTTTTGGCCTTCTGCACCGTAAATTTCGGTGCGAAAACCCACTGAGCCATTTGGCACAATTTTTTGAAAAACGCGTTTTTTGGCTGCTTTCGACCGTTTTTTATGGATTTTTTGGTTTTTGTGCTGTTTTGGATACTTTTTTTCATCATTTTAAGCATAATTCGGCAAAAAAATTTCAGCAAAATTTCTTTTTCCAAAATTTCAAAAAATTAATTTCCAGACATTTTCATGGTCCTAATACTGAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATTGAACTTCTGGCCCTTGGCACACTTTTTTGAAAAACGCGTTTTTTGGCTGTTCTTAGCGAATTTTTAGTGTTTTAGTTAATTTTTTTGCGAAATGTAAGATTTTTTCGACAGAAAAAAGGCAAAAATAGGTTCAAAATCTATTGAAATTGTGGTTTTAAAGACATTTTGAGACTAGAAAAGTCATAAAAACAGCTGAAACAGAATAAATCTCAAAGAA</canonical>
            <polymorphic>CTCATCCATAATCCATTTTGGCGTTTTTCCATTTTTGTACAATTTGATAATTCCCATTCTTATCACCGTTTGGTTCACTTCAAAACACGATTCATCCGTTTCGAAATATTCAAATTTTTGAGGAATTAATTTGTTGATATTTCGAATTGAAGGACAGCGTTGAGCGAATTCCAGTCTGAAAATTTCAGATTTACAGATTAAAAATTAAAAATTAGGCTTTAAAACTGAATTTTAGCCCAAAATTGGTAATTTTTGACTTTAAACAACTCCAGAACAAAAAAATCTCACCTAACCATTGGATCCATAAATGACAATATTGATTTTTGGGCTTCATACGGTACCGGCTTGCTCAATGACATCTGAATTTAGAATTTCCAGATTTTTTCAAAAAATTTTTTTTTGTAAAAAAGGTTCCAAACGAGCTAAAAATCAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATCGAACTTTTGGCCTTCWGCACCGTAAATTTCGGTGCGAAAACCCACTGAGCCATTTGGCACAATTTTTTGAAAAACGCGTTTTTTGGCTGCTTTCGACCGTTTTTTATGGATTTTTTGGTTTTTGTGCTGTTTTGGATACTTTTTTTCATCATTTTAAGCATAATTCGGCAAAAAAATTTCAGCAAAATTTCTTTTTCCAAAATTTCAAAAAATTAATTTCCAGACATTTTCATGGTCCTAATACTGAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATTGAACTTCTGGCCCTTGGCACACTTTTTTGAAAAACGCGTTTTTTGGCTGTTCTTAGCGAATTTTTAGTGTTTTAGTTAATTTTTTTGCGAAATGTAAGATTTTTTCGACAGAAAAAAGGCAAAAATAGGTTCAAAATCTATTGAAATTGTGGTTTTAAAGACATTTTGAGACTAGAAAAGTCATAAAAACAGCTGAAACAGAATAAATCTCAAAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTGATTTTTGGGCTTCATAC</pcr_primer_p1>
		<pcr_primer_p2>CGAATTATGCTTAAAATGATGA</pcr_primer_p2>
		<pcr_amplicon_size>337</pcr_amplicon_size>
		<canonical_amplicon>TATTGATTTTTGGGCTTCATACGGTACCGGCTTGCTCAATGACATCTGAATTTAGAATTTCCAGATTTTTTCAAAAAATTTTTTTTTGTAAAAAAGGTTCCAAACGAGCTAAAAATCAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATCGAACTTTTGGCCTTCTGCACCGTAAATTTCGGTGCGAAAACCCACTGAGCCATTTGGCACAATTTTTTGAAAAACGCGTTTTTTGGCTGCTTTCGACCGTTTTTTATGGATTTTTTGGTTTTTGTGCTGTTTTGGATACTTTTTTTCATCATTTTAAGCATAATTCG</canonical_amplicon>
		<polymorphic_amplicon>TATTGATTTTTGGGCTTCATACGGTACCGGCTTGCTCAATGACATCTGAATTTAGAATTTCCAGATTTTTTCAAAAAATTTTTTTTTGTAAAAAAGGTTCCAAACGAGCTAAAAATCAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATCGAACTTTTGGCCTTCWGCACCGTAAATTTCGGTGCGAAAACCCACTGAGCCATTTGGCACAATTTTTTGAAAAACGCGTTTTTTGGCTGCTTTCGACCGTTTTTTATGGATTTTTTGGTTTTTGTGCTGTTTTGGATACTTTTTTTCATCATTTTAAGCATAATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32970</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>83905</contig_pos>
        <strand></strand>
        <context>atttggcaca[A/C]ttttttgaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTCTGCACCGTAAATTTCGGTGCGAAAACCCACTGAGCCATTTGGCACA</left_flank>
        <right_flank>TTTTTTGAAAAACGCGTTTTTTGGCTGCTTTCGACCGTTTTTTATGGATT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAATTCCCATTCTTATCACCGTTTGGTTCACTTCAAAACACGATTCATCCGTTTCGAAATATTCAAATTTTTGAGGAATTAATTTGTTGATATTTCGAATTGAAGGACAGCGTTGAGCGAATTCCAGTCTGAAAATTTCAGATTTACAGATTAAAAATTAAAAATTAGGCTTTAAAACTGAATTTTAGCCCAAAATTGGTAATTTTTGACTTTAAACAACTCCAGAACAAAAAAATCTCACCTAACCATTGGATCCATAAATGACAATATTGATTTTTGGGCTTCATACGGTACCGGCTTGCTCAATGACATCTGAATTTAGAATTTCCAGATTTTTTCAAAAAATTTTTTTTTGTAAAAAAGGTTCCAAACGAGCTAAAAATCAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATCGAACTTTTGGCCTTCTGCACCGTAAATTTCGGTGCGAAAACCCACTGAGCCATTTGGCACAATTTTTTGAAAAACGCGTTTTTTGGCTGCTTTCGACCGTTTTTTATGGATTTTTTGGTTTTTGTGCTGTTTTGGATACTTTTTTTCATCATTTTAAGCATAATTCGGCAAAAAAATTTCAGCAAAATTTCTTTTTCCAAAATTTCAAAAAATTAATTTCCAGACATTTTCATGGTCCTAATACTGAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATTGAACTTCTGGCCCTTGGCACACTTTTTTGAAAAACGCGTTTTTTGGCTGTTCTTAGCGAATTTTTAGTGTTTTAGTTAATTTTTTTGCGAAATGTAAGATTTTTTCGACAGAAAAAAGGCAAAAATAGGTTCAAAATCTATTGAAATTGTGGTTTTAAAGACATTTTGAGACTAGAAAAGTCATAAAAACAGCTGAAACAGAATAAATCTCAAAGAAAAGGAAAAAACGGGAAAAAAGAAACATAGAACACAGAGATCTATTG</canonical>
            <polymorphic>ATAATTCCCATTCTTATCACCGTTTGGTTCACTTCAAAACACGATTCATCCGTTTCGAAATATTCAAATTTTTGAGGAATTAATTTGTTGATATTTCGAATTGAAGGACAGCGTTGAGCGAATTCCAGTCTGAAAATTTCAGATTTACAGATTAAAAATTAAAAATTAGGCTTTAAAACTGAATTTTAGCCCAAAATTGGTAATTTTTGACTTTAAACAACTCCAGAACAAAAAAATCTCACCTAACCATTGGATCCATAAATGACAATATTGATTTTTGGGCTTCATACGGTACCGGCTTGCTCAATGACATCTGAATTTAGAATTTCCAGATTTTTTCAAAAAATTTTTTTTTGTAAAAAAGGTTCCAAACGAGCTAAAAATCAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATCGAACTTTTGGCCTTCTGCACCGTAAATTTCGGTGCGAAAACCCACTGAGCCATTTGGCACAMTTTTTTGAAAAACGCGTTTTTTGGCTGCTTTCGACCGTTTTTTATGGATTTTTTGGTTTTTGTGCTGTTTTGGATACTTTTTTTCATCATTTTAAGCATAATTCGGCAAAAAAATTTCAGCAAAATTTCTTTTTCCAAAATTTCAAAAAATTAATTTCCAGACATTTTCATGGTCCTAATACTGAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATTGAACTTCTGGCCCTTGGCACACTTTTTTGAAAAACGCGTTTTTTGGCTGTTCTTAGCGAATTTTTAGTGTTTTAGTTAATTTTTTTGCGAAATGTAAGATTTTTTCGACAGAAAAAAGGCAAAAATAGGTTCAAAATCTATTGAAATTGTGGTTTTAAAGACATTTTGAGACTAGAAAAGTCATAAAAACAGCTGAAACAGAATAAATCTCAAAGAAAAGGAAAAAACGGGAAAAAAGAAACATAGAACACAGAGATCTATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>119 115 101 77 67 64 62 49 41 36 32 22 22 21 19 18 17 15 14 13 13 11 11 10 7 7 7 4 4 2</canonical_bands>
                <polymorphic_bands>137 119 115 77 67 64 62 49 41 32 22 22 21 19 18 17 15 14 13 13 11 11 10 7 7 7 4 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTGATTTTTGGGCTTCATAC</pcr_primer_p1>
		<pcr_primer_p2>CGAATTATGCTTAAAATGATGA</pcr_primer_p2>
		<pcr_amplicon_size>337</pcr_amplicon_size>
		<canonical_amplicon>TATTGATTTTTGGGCTTCATACGGTACCGGCTTGCTCAATGACATCTGAATTTAGAATTTCCAGATTTTTTCAAAAAATTTTTTTTTGTAAAAAAGGTTCCAAACGAGCTAAAAATCAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATCGAACTTTTGGCCTTCTGCACCGTAAATTTCGGTGCGAAAACCCACTGAGCCATTTGGCACAATTTTTTGAAAAACGCGTTTTTTGGCTGCTTTCGACCGTTTTTTATGGATTTTTTGGTTTTTGTGCTGTTTTGGATACTTTTTTTCATCATTTTAAGCATAATTCG</canonical_amplicon>
		<polymorphic_amplicon>TATTGATTTTTGGGCTTCATACGGTACCGGCTTGCTCAATGACATCTGAATTTAGAATTTCCAGATTTTTTCAAAAAATTTTTTTTTGTAAAAAAGGTTCCAAACGAGCTAAAAATCAATTTTTCTAGCTCCGCACAAAAATAAAAAAATGTTGAACCCAGGAAGGAATCGAACTTTTGGCCTTCTGCACCGTAAATTTCGGTGCGAAAACCCACTGAGCCATTTGGCACAMTTTTTTGAAAAACGCGTTTTTTGGCTGCTTTCGACCGTTTTTTATGGATTTTTTGGTTTTTGTGCTGTTTTGGATACTTTTTTTCATCATTTTAAGCATAATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32971</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>98532</contig_pos>
        <strand>+</strand>
        <context>AATTCCCGAT[A/G]AAAAATgctt</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTAAAATTATCAAATTATGATTTCTAACATATAAATTGGAATTCCCGAT</left_flank>
        <right_flank>AAAAATGCTTCAAAATGACTATAAACACGGCGTACTTTGAGAAAATTGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATATAAATTGAAATTCCCGATGAAAAATGCTTCAAAATGACTATAAAAACGGCGTACTTTGAGAAAATTGGAATGTTCAGCAAGGGGCGGGGTACTGTAACTTATCAATCATCAACTTTTAGAATTTGAATTTAACGAAACTGAGATTGTTGCGTTGAGAGCTTTGAAATGAGCCCAGGCACGACATATTTCTGGCAATAGTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTATTTAGGCTCATTTTGAAGCTCTAAAAGTGCCTAATTCAGAACTTTTAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTGTTTTGCCTATTTTTGCCCATTTTTGCCCATTTTAGCCCAAGACTCAAAATTTCCCGAAATCGGTCATGTTTGGGCTCATTTTGAAGTTTTAGATGTGTAAAATTATCAAATTATGATTTCTAACATATAAATTGGAATTCCCGATGAAAAATGCTTCAAAATGACTATAAACACGGCGTACTTTGAGAAAATTGAAATGTTCAGAAAGGGTGGGGTACTGTCACTCATCAAATATCAACTTTTATAATTTGAAATTTACGAAACTGAGATTGTTGCATTGAGAGCTTTGGAATGAGCCCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCAGAT</canonical>
            <polymorphic>ACATATAAATTGAAATTCCCGATRAAAAATGCTTCAAAATGACTATAAAAACGGCGTACTTTGAGAAAATTGGAATGTTCAGCAAGGGGCGGGGTACTGTAACTTATCAATCATCAACTTTTAGAATTTGAATTTAACGAAACTGAGATTGTTGCGTTGAGAGCTTTGAAATGAGCCCAGGCACGACATATTTCTGGCAATAGTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTATTTAGGCTCATTTTGAAGCTCTAAAAGTGCCTAATTCAGAACTTTTAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTGTTTTGCCTATTTTTGCCCATTTTTGCCCATTTTAGCCCAAGACTCAAAATTTCCCGAAATCGGTCATGTTTGGGCTCATTTTGAAGTTTTAGATGTGTAAAATTATCAAATTATGATTTCTAACATATAAATTGGAATTCCCGATGAAAAATGCTTCAAAATGACTATAAACACGGCGTACTTTGAGAAAATTGAAATGTTCAGAAAGGGTGGGGTACTGTCACTCATCAAATATCAACTTTTATAATTTGAAATTTACGAAACTGAGATTGTTGCATTGAGAGCTTTGGAATGAGCCCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAACTTATCAATCATCAACTTTTA</pcr_primer_p1>
		<pcr_primer_p2>TGAATTGCTAGACAAGTTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>900</pcr_amplicon_size>
		<canonical_amplicon>TGTAACTTATCAATCATCAACTTTTAGAATTTGAATTTAACGAAACTGAGATTGTTGCGTTGAGAGCTTTGAAATGAGCCCAGGCACGACATATTTCTGGCAATAGTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTATTTAGGCTCATTTTGAAGCTCTAAAAGTGCCTAATTCAGAACTTTTAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTGTTTTGCCTATTTTTGCCCATTTTTGCCCATTTTAGCCCAAGACTCAAAATTTCCCGAAATCGGTCATGTTTGGGCTCATTTTGAAGTTTTAGATGTGTAAAATTATCAAATTATGATTTCTAACATATAAATTGGAATTCCCGATGAAAAATGCTTCAAAATGACTATAAACACGGCGTACTTTGAGAAAATTGAAATGTTCAGAAAGGGTGGGGTACTGTCACTCATCAAATATCAACTTTTATAATTTGAAATTTACGAAACTGAGATTGTTGCATTGAGAGCTTTGGAATGAGCCCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCA</canonical_amplicon>
		<polymorphic_amplicon>TGTAACTTATCAATCATCAACTTTTAGAATTTGAATTTAACGAAACTGAGATTGTTGCGTTGAGAGCTTTGAAATGAGCCCAGGCACGACATATTTCTGGCAATAGTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTATTTAGGCTCATTTTGAAGCTCTAAAAGTGCCTAATTCAGAACTTTTAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTGTTTTGCCTATTTTTGCCCATTTTTGCCCATTTTAGCCCAAGACTCAAAATTTCCCGAAATCGGTCATGTTTGGGCTCATTTTGAAGTTTTAGATGTGTAAAATTATCAAATTATGATTTCTAACATATAAATTGGAATTCCCGATGAAAAATGCTTCAAAATGACTATAAACACGGCGTACTTTGAGAAAATTGAAATGTTCAGAAAGGGTGGGGTACTGTCACTCATCAAATATCAACTTTTATAATTTGAAATTTACGAAACTGAGATTGTTGCATTGAGAGCTTTGGAATGAGCCCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32972</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>98684</contig_pos>
        <strand></strand>
        <context>tggaatgagc[C/A]caaamacgac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTGAAATTTACGAAACTGAGATTGTTGCATTGAGAGCTTTGGAATGAGC</left_flank>
        <right_flank>CAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCG</right_flank>
        <qual_score>46</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCGTTGAGAGCTTTGAAATGAGCCCAGGCACGACATATTTCTGGCAATAGTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTATTTAGGCTCATTTTGAAGCTCTAAAAGTGCCTAATTCAGAACTTTTAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTGTTTTGCCTATTTTTGCCCATTTTTGCCCATTTTAGCCCAAGACTCAAAATTTCCCGAAATCGGTCATGTTTGGGCTCATTTTGAAGTTTTAGATGTGTAAAATTATCAAATTATGATTTCTAACATATAAATTGGAATTCCCGATGAAAAATGCTTCAAAATGACTATAAACACGGCGTACTTTGAGAAAATTGAAATGTTCAGAAAGGGTGGGGTACTGTCACTCATCAAATATCAACTTTTATAATTTGAAATTTACGAAACTGAGATTGTTGCATTGAGAGCTTTGGAATGAGCCCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAAACTCACTAAAATCCAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATATGGACCAAAACAGA</canonical>
            <polymorphic>TGCGTTGAGAGCTTTGAAATGAGCCCAGGCACGACATATTTCTGGCAATAGTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTATTTAGGCTCATTTTGAAGCTCTAAAAGTGCCTAATTCAGAACTTTTAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTGTTTTGCCTATTTTTGCCCATTTTTGCCCATTTTAGCCCAAGACTCAAAATTTCCCGAAATCGGTCATGTTTGGGCTCATTTTGAAGTTTTAGATGTGTAAAATTATCAAATTATGATTTCTAACATATAAATTGGAATTCCCGATGAAAAATGCTTCAAAATGACTATAAACACGGCGTACTTTGAGAAAATTGAAATGTTCAGAAAGGGTGGGGTACTGTCACTCATCAAATATCAACTTTTATAATTTGAAATTTACGAAACTGAGATTGTTGCATTGAGAGCTTTGGAATGAGCMCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAAACTCACTAAAATCCAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATATGGACCAAAACAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>500 253 222 25</canonical_bands>
                <polymorphic_bands>722 253 25</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>500 253 222 25</canonical_bands>
                <polymorphic_bands>722 253 25</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>236 210 106 105 49 49 39 39 38 38 12 12 12 12 12 11 10 10</canonical_bands>
                <polymorphic_bands>236 210 106 105 61 49 39 39 38 38 12 12 12 12 11 10 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTAACTTATCAATCATCAACTTTTA</pcr_primer_p1>
		<pcr_primer_p2>TGAATTGCTAGACAAGTTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>900</pcr_amplicon_size>
		<canonical_amplicon>CCCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCA</canonical_amplicon>
		<polymorphic_amplicon>CMCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32973</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>98689</contig_pos>
        <strand></strand>
        <context>tgagcmcaaa[C/A]acgacatatt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AATTTACGAAACTGAGATTGTTGCATTGAGAGCTTTGGAATGAGCCCAAA</left_flank>
        <right_flank>ACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGAGCTTTGAAATGAGCCCAGGCACGACATATTTCTGGCAATAGTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTATTTAGGCTCATTTTGAAGCTCTAAAAGTGCCTAATTCAGAACTTTTAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTGTTTTGCCTATTTTTGCCCATTTTTGCCCATTTTAGCCCAAGACTCAAAATTTCCCGAAATCGGTCATGTTTGGGCTCATTTTGAAGTTTTAGATGTGTAAAATTATCAAATTATGATTTCTAACATATAAATTGGAATTCCCGATGAAAAATGCTTCAAAATGACTATAAACACGGCGTACTTTGAGAAAATTGAAATGTTCAGAAAGGGTGGGGTACTGTCACTCATCAAATATCAACTTTTATAATTTGAAATTTACGAAACTGAGATTGTTGCATTGAGAGCTTTGGAATGAGCCCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAAACTCACTAAAATCCAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATATGGACCAAAACAGAGGGCC</canonical>
            <polymorphic>TGAGAGCTTTGAAATGAGCCCAGGCACGACATATTTCTGGCAATAGTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTATTTAGGCTCATTTTGAAGCTCTAAAAGTGCCTAATTCAGAACTTTTAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTGTTTTGCCTATTTTTGCCCATTTTTGCCCATTTTAGCCCAAGACTCAAAATTTCCCGAAATCGGTCATGTTTGGGCTCATTTTGAAGTTTTAGATGTGTAAAATTATCAAATTATGATTTCTAACATATAAATTGGAATTCCCGATGAAAAATGCTTCAAAATGACTATAAACACGGCGTACTTTGAGAAAATTGAAATGTTCAGAAAGGGTGGGGTACTGTCACTCATCAAATATCAACTTTTATAATTTGAAATTTACGAAACTGAGATTGTTGCATTGAGAGCTTTGGAATGAGCCCAAAMACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAAACTCACTAAAATCCAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATATGGACCAAAACAGAGGGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>156 156 120 90 83 81 76 61 39 30 28 26 22 14 11 3 2 2</canonical_bands>
                <polymorphic_bands>164 156 156 120 90 76 61 39 30 28 26 22 14 11 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTAACTTATCAATCATCAACTTTTA</pcr_primer_p1>
		<pcr_primer_p2>TGAATTGCTAGACAAGTTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>900</pcr_amplicon_size>
		<canonical_amplicon>ACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCA</canonical_amplicon>
		<polymorphic_amplicon>AMACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32974</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>98834</contig_pos>
        <strand></strand>
        <context>aaaattgaat[T/G]tgttcaaaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAAT</left_flank>
        <right_flank>TGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTT</right_flank>
        <qual_score>47</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAACTTTTAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTGTTTTGCCTATTTTTGCCCATTTTTGCCCATTTTAGCCCAAGACTCAAAATTTCCCGAAATCGGTCATGTTTGGGCTCATTTTGAAGTTTTAGATGTGTAAAATTATCAAATTATGATTTCTAACATATAAATTGGAATTCCCGATGAAAAATGCTTCAAAATGACTATAAACACGGCGTACTTTGAGAAAATTGAAATGTTCAGAAAGGGTGGGGTACTGTCACTCATCAAATATCAACTTTTATAATTTGAAATTTACGAAACTGAGATTGTTGCATTGAGAGCTTTGGAATGAGCCCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAAACTCACTAAAATCCAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATATGGACCAAAACAGAGGGCCAAGGACAGGTGCTAATGGTCCATCAACCCCCCCCCTCATTTGTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTCTCAGATTCTAATCGGCTGAGCAATGTGTAATTAAGGTGAGATTGGA</canonical>
            <polymorphic>CAGAACTTTTAGAAAAATTGAATKTGTTCAAAATTTGGACAAGTTATGTCTGTTTTGCCTATTTTTGCCCATTTTTGCCCATTTTAGCCCAAGACTCAAAATTTCCCGAAATCGGTCATGTTTGGGCTCATTTTGAAGTTTTAGATGTGTAAAATTATCAAATTATGATTTCTAACATATAAATTGGAATTCCCGATGAAAAATGCTTCAAAATGACTATAAACACGGCGTACTTTGAGAAAATTGAAATGTTCAGAAAGGGTGGGGTACTGTCACTCATCAAATATCAACTTTTATAATTTGAAATTTACGAAACTGAGATTGTTGCATTGAGAGCTTTGGAATGAGCCCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAAACTCACTAAAATCCAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATATGGACCAAAACAGAGGGCCAAGGACAGGTGCTAATGGTCCATCAACCCCCCCCCTCATTTGTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTCTCAGATTCTAATCGGCTGAGCAATGTGTAATTAAGGTGAGATTGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>244 151 117 96 90 88 68 53 24 20 19 11 11 8</canonical_bands>
                <polymorphic_bands>244 151 117 96 90 88 68 53 31 24 19 11 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>226 129 68 67 56 54 53 53 30 29 23 22 21 21 19 19 18 16 15 11 11 8 8 7 6 5 5</canonical_bands>
                <polymorphic_bands>226 129 68 67 56 54 53 53 30 29 23 22 21 21 19 19 18 16 16 15 11 8 8 7 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTAACTTATCAATCATCAACTTTTA</pcr_primer_p1>
		<pcr_primer_p2>TGAATTGCTAGACAAGTTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>900</pcr_amplicon_size>
		<canonical_amplicon>TTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCA</canonical_amplicon>
		<polymorphic_amplicon>TTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32975</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>98853</contig_pos>
        <strand></strand>
        <context>atttggacaa[G/A]ttatgtcyat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAA</left_flank>
        <right_flank>TTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAA</right_flank>
        <qual_score>47</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTTGTTCAAAATTTGGACAAGTTATGTCTGTTTTGCCTATTTTTGCCCATTTTTGCCCATTTTAGCCCAAGACTCAAAATTTCCCGAAATCGGTCATGTTTGGGCTCATTTTGAAGTTTTAGATGTGTAAAATTATCAAATTATGATTTCTAACATATAAATTGGAATTCCCGATGAAAAATGCTTCAAAATGACTATAAACACGGCGTACTTTGAGAAAATTGAAATGTTCAGAAAGGGTGGGGTACTGTCACTCATCAAATATCAACTTTTATAATTTGAAATTTACGAAACTGAGATTGTTGCATTGAGAGCTTTGGAATGAGCCCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAAACTCACTAAAATCCAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATATGGACCAAAACAGAGGGCCAAGGACAGGTGCTAATGGTCCATCAACCCCCCCCCTCATTTGTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTCTCAGATTCTAATCGGCTGAGCAATGTGTAATTAAGGTGAGATTGGAGTCTAGCATCTGCCGGACC</canonical>
            <polymorphic>GAATTTGTTCAAAATTTGGACAAGTTATGTCTGTTTTGCCTATTTTTGCCCATTTTTGCCCATTTTAGCCCAAGACTCAAAATTTCCCGAAATCGGTCATGTTTGGGCTCATTTTGAAGTTTTAGATGTGTAAAATTATCAAATTATGATTTCTAACATATAAATTGGAATTCCCGATGAAAAATGCTTCAAAATGACTATAAACACGGCGTACTTTGAGAAAATTGAAATGTTCAGAAAGGGTGGGGTACTGTCACTCATCAAATATCAACTTTTATAATTTGAAATTTACGAAACTGAGATTGTTGCATTGAGAGCTTTGGAATGAGCCCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAARTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAAACTCACTAAAATCCAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATATGGACCAAAACAGAGGGCCAAGGACAGGTGCTAATGGTCCATCAACCCCCCCCCTCATTTGTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTCTCAGATTCTAATCGGCTGAGCAATGTGTAATTAAGGTGAGATTGGAGTCTAGCATCTGCCGGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAACTTATCAATCATCAACTTTTA</pcr_primer_p1>
		<pcr_primer_p2>TGAATTGCTAGACAAGTTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>900</pcr_amplicon_size>
		<canonical_amplicon>AGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCA</canonical_amplicon>
		<polymorphic_amplicon>ARTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32976</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>98861</contig_pos>
        <strand></strand>
        <context>aarttatgtc[T/C]attttkccta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTC</left_flank>
        <right_flank>ATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGA</right_flank>
        <qual_score>50</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAATTTGGACAAGTTATGTCTGTTTTGCCTATTTTTGCCCATTTTTGCCCATTTTAGCCCAAGACTCAAAATTTCCCGAAATCGGTCATGTTTGGGCTCATTTTGAAGTTTTAGATGTGTAAAATTATCAAATTATGATTTCTAACATATAAATTGGAATTCCCGATGAAAAATGCTTCAAAATGACTATAAACACGGCGTACTTTGAGAAAATTGAAATGTTCAGAAAGGGTGGGGTACTGTCACTCATCAAATATCAACTTTTATAATTTGAAATTTACGAAACTGAGATTGTTGCATTGAGAGCTTTGGAATGAGCCCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAAACTCACTAAAATCCAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATATGGACCAAAACAGAGGGCCAAGGACAGGTGCTAATGGTCCATCAACCCCCCCCCTCATTTGTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTCTCAGATTCTAATCGGCTGAGCAATGTGTAATTAAGGTGAGATTGGAGTCTAGCATCTGCCGGACCTCTCTCAT</canonical>
            <polymorphic>TCAAAATTTGGACAAGTTATGTCTGTTTTGCCTATTTTTGCCCATTTTTGCCCATTTTAGCCCAAGACTCAAAATTTCCCGAAATCGGTCATGTTTGGGCTCATTTTGAAGTTTTAGATGTGTAAAATTATCAAATTATGATTTCTAACATATAAATTGGAATTCCCGATGAAAAATGCTTCAAAATGACTATAAACACGGCGTACTTTGAGAAAATTGAAATGTTCAGAAAGGGTGGGGTACTGTCACTCATCAAATATCAACTTTTATAATTTGAAATTTACGAAACTGAGATTGTTGCATTGAGAGCTTTGGAATGAGCCCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCYATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAAACTCACTAAAATCCAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATATGGACCAAAACAGAGGGCCAAGGACAGGTGCTAATGGTCCATCAACCCCCCCCCTCATTTGTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTCTCAGATTCTAATCGGCTGAGCAATGTGTAATTAAGGTGAGATTGGAGTCTAGCATCTGCCGGACCTCTCTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAACTTATCAATCATCAACTTTTA</pcr_primer_p1>
		<pcr_primer_p2>TGAATTGCTAGACAAGTTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>900</pcr_amplicon_size>
		<canonical_amplicon>CTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCA</canonical_amplicon>
		<polymorphic_amplicon>CYATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32977</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>98867</contig_pos>
        <strand></strand>
        <context>tgtcyatttt[T/G]cctatttttg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTT</left_flank>
        <right_flank>CCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCC</right_flank>
        <qual_score>49</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGACAAGTTATGTCTGTTTTGCCTATTTTTGCCCATTTTTGCCCATTTTAGCCCAAGACTCAAAATTTCCCGAAATCGGTCATGTTTGGGCTCATTTTGAAGTTTTAGATGTGTAAAATTATCAAATTATGATTTCTAACATATAAATTGGAATTCCCGATGAAAAATGCTTCAAAATGACTATAAACACGGCGTACTTTGAGAAAATTGAAATGTTCAGAAAGGGTGGGGTACTGTCACTCATCAAATATCAACTTTTATAATTTGAAATTTACGAAACTGAGATTGTTGCATTGAGAGCTTTGGAATGAGCCCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAAACTCACTAAAATCCAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATATGGACCAAAACAGAGGGCCAAGGACAGGTGCTAATGGTCCATCAACCCCCCCCCTCATTTGTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTCTCAGATTCTAATCGGCTGAGCAATGTGTAATTAAGGTGAGATTGGAGTCTAGCATCTGCCGGACCTCTCTCATTTCCTT</canonical>
            <polymorphic>TTTGGACAAGTTATGTCTGTTTTGCCTATTTTTGCCCATTTTTGCCCATTTTAGCCCAAGACTCAAAATTTCCCGAAATCGGTCATGTTTGGGCTCATTTTGAAGTTTTAGATGTGTAAAATTATCAAATTATGATTTCTAACATATAAATTGGAATTCCCGATGAAAAATGCTTCAAAATGACTATAAACACGGCGTACTTTGAGAAAATTGAAATGTTCAGAAAGGGTGGGGTACTGTCACTCATCAAATATCAACTTTTATAATTTGAAATTTACGAAACTGAGATTGTTGCATTGAGAGCTTTGGAATGAGCCCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTKCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAAACTCACTAAAATCCAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATATGGACCAAAACAGAGGGCCAAGGACAGGTGCTAATGGTCCATCAACCCCCCCCCTCATTTGTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTCTCAGATTCTAATCGGCTGAGCAATGTGTAATTAAGGTGAGATTGGAGTCTAGCATCTGCCGGACCTCTCTCATTTCCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAACTTATCAATCATCAACTTTTA</pcr_primer_p1>
		<pcr_primer_p2>TGAATTGCTAGACAAGTTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>900</pcr_amplicon_size>
		<canonical_amplicon>TTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCA</canonical_amplicon>
		<polymorphic_amplicon>TKCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32978</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>98908</contig_pos>
        <strand></strand>
        <context>cccaaaactc[T/A]agattttcca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTC</left_flank>
        <right_flank>AGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGT</right_flank>
        <qual_score>49</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCCCATTTTAGCCCAAGACTCAAAATTTCCCGAAATCGGTCATGTTTGGGCTCATTTTGAAGTTTTAGATGTGTAAAATTATCAAATTATGATTTCTAACATATAAATTGGAATTCCCGATGAAAAATGCTTCAAAATGACTATAAACACGGCGTACTTTGAGAAAATTGAAATGTTCAGAAAGGGTGGGGTACTGTCACTCATCAAATATCAACTTTTATAATTTGAAATTTACGAAACTGAGATTGTTGCATTGAGAGCTTTGGAATGAGCCCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAAACTCACTAAAATCCAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATATGGACCAAAACAGAGGGCCAAGGACAGGTGCTAATGGTCCATCAACCCCCCCCCTCATTTGTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTCTCAGATTCTAATCGGCTGAGCAATGTGTAATTAAGGTGAGATTGGAGTCTAGCATCTGCCGGACCTCTCTCATTTCCTTTGAGTCCTACAATGATAGATTAGGCATTAGGATGTTTCAAG</canonical>
            <polymorphic>TTGCCCATTTTAGCCCAAGACTCAAAATTTCCCGAAATCGGTCATGTTTGGGCTCATTTTGAAGTTTTAGATGTGTAAAATTATCAAATTATGATTTCTAACATATAAATTGGAATTCCCGATGAAAAATGCTTCAAAATGACTATAAACACGGCGTACTTTGAGAAAATTGAAATGTTCAGAAAGGGTGGGGTACTGTCACTCATCAAATATCAACTTTTATAATTTGAAATTTACGAAACTGAGATTGTTGCATTGAGAGCTTTGGAATGAGCCCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCWAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAAACTCACTAAAATCCAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATATGGACCAAAACAGAGGGCCAAGGACAGGTGCTAATGGTCCATCAACCCCCCCCCTCATTTGTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTCTCAGATTCTAATCGGCTGAGCAATGTGTAATTAAGGTGAGATTGGAGTCTAGCATCTGCCGGACCTCTCTCATTTCCTTTGAGTCCTACAATGATAGATTAGGCATTAGGATGTTTCAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 318 112 71</canonical_bands>
                <polymorphic_bands>611 318 71</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTAACTTATCAATCATCAACTTTTA</pcr_primer_p1>
		<pcr_primer_p2>TGAATTGCTAGACAAGTTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>900</pcr_amplicon_size>
		<canonical_amplicon>CTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCA</canonical_amplicon>
		<polymorphic_amplicon>CWAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32979</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>98923</contig_pos>
        <strand></strand>
        <context>tttccaaaat[G/A]ggtcatgttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAAT</left_flank>
        <right_flank>GGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAAT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGACTCAAAATTTCCCGAAATCGGTCATGTTTGGGCTCATTTTGAAGTTTTAGATGTGTAAAATTATCAAATTATGATTTCTAACATATAAATTGGAATTCCCGATGAAAAATGCTTCAAAATGACTATAAACACGGCGTACTTTGAGAAAATTGAAATGTTCAGAAAGGGTGGGGTACTGTCACTCATCAAATATCAACTTTTATAATTTGAAATTTACGAAACTGAGATTGTTGCATTGAGAGCTTTGGAATGAGCCCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAAACTCACTAAAATCCAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATATGGACCAAAACAGAGGGCCAAGGACAGGTGCTAATGGTCCATCAACCCCCCCCCTCATTTGTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTCTCAGATTCTAATCGGCTGAGCAATGTGTAATTAAGGTGAGATTGGAGTCTAGCATCTGCCGGACCTCTCTCATTTCCTTTGAGTCCTACAATGATAGATTAGGCATTAGGATGTTTCAAGGCTCATAACTCTGCT</canonical>
            <polymorphic>CAAGACTCAAAATTTCCCGAAATCGGTCATGTTTGGGCTCATTTTGAAGTTTTAGATGTGTAAAATTATCAAATTATGATTTCTAACATATAAATTGGAATTCCCGATGAAAAATGCTTCAAAATGACTATAAACACGGCGTACTTTGAGAAAATTGAAATGTTCAGAAAGGGTGGGGTACTGTCACTCATCAAATATCAACTTTTATAATTTGAAATTTACGAAACTGAGATTGTTGCATTGAGAGCTTTGGAATGAGCCCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATRGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAAACTCACTAAAATCCAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATATGGACCAAAACAGAGGGCCAAGGACAGGTGCTAATGGTCCATCAACCCCCCCCCTCATTTGTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTCTCAGATTCTAATCGGCTGAGCAATGTGTAATTAAGGTGAGATTGGAGTCTAGCATCTGCCGGACCTCTCTCATTTCCTTTGAGTCCTACAATGATAGATTAGGCATTAGGATGTTTCAAGGCTCATAACTCTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAACTTATCAATCATCAACTTTTA</pcr_primer_p1>
		<pcr_primer_p2>TGAATTGCTAGACAAGTTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>900</pcr_amplicon_size>
		<canonical_amplicon>TGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCA</canonical_amplicon>
		<polymorphic_amplicon>TRGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32980</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>98975</contig_pos>
        <strand></strand>
        <context>cttgaaaatt[A/G]ycattttgaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATT</left_flank>
        <right_flank>CCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAA</right_flank>
        <qual_score>47</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGATGTGTAAAATTATCAAATTATGATTTCTAACATATAAATTGGAATTCCCGATGAAAAATGCTTCAAAATGACTATAAACACGGCGTACTTTGAGAAAATTGAAATGTTCAGAAAGGGTGGGGTACTGTCACTCATCAAATATCAACTTTTATAATTTGAAATTTACGAAACTGAGATTGTTGCATTGAGAGCTTTGGAATGAGCCCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAAACTCACTAAAATCCAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATATGGACCAAAACAGAGGGCCAAGGACAGGTGCTAATGGTCCATCAACCCCCCCCCTCATTTGTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTCTCAGATTCTAATCGGCTGAGCAATGTGTAATTAAGGTGAGATTGGAGTCTAGCATCTGCCGGACCTCTCTCATTTCCTTTGAGTCCTACAATGATAGATTAGGCATTAGGATGTTTCAAGGCTCATAACTCTGCTCAAAATCAATATTTCAAATTGAACCAAACAGAAAGATACAGTACTTGAAAAG</canonical>
            <polymorphic>TAGATGTGTAAAATTATCAAATTATGATTTCTAACATATAAATTGGAATTCCCGATGAAAAATGCTTCAAAATGACTATAAACACGGCGTACTTTGAGAAAATTGAAATGTTCAGAAAGGGTGGGGTACTGTCACTCATCAAATATCAACTTTTATAATTTGAAATTTACGAAACTGAGATTGTTGCATTGAGAGCTTTGGAATGAGCCCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTRCCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAAACTCACTAAAATCCAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATATGGACCAAAACAGAGGGCCAAGGACAGGTGCTAATGGTCCATCAACCCCCCCCCTCATTTGTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTCTCAGATTCTAATCGGCTGAGCAATGTGTAATTAAGGTGAGATTGGAGTCTAGCATCTGCCGGACCTCTCTCATTTCCTTTGAGTCCTACAATGATAGATTAGGCATTAGGATGTTTCAAGGCTCATAACTCTGCTCAAAATCAATATTTCAAATTGAACCAAACAGAAAGATACAGTACTTGAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAACTTATCAATCATCAACTTTTA</pcr_primer_p1>
		<pcr_primer_p2>TGAATTGCTAGACAAGTTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>900</pcr_amplicon_size>
		<canonical_amplicon>TACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCA</canonical_amplicon>
		<polymorphic_amplicon>TRCCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32981</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>98976</contig_pos>
        <strand></strand>
        <context>ttgaaaattr[C/T]cattttgaag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTA</left_flank>
        <right_flank>CATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAAT</right_flank>
        <qual_score>49</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATGTGTAAAATTATCAAATTATGATTTCTAACATATAAATTGGAATTCCCGATGAAAAATGCTTCAAAATGACTATAAACACGGCGTACTTTGAGAAAATTGAAATGTTCAGAAAGGGTGGGGTACTGTCACTCATCAAATATCAACTTTTATAATTTGAAATTTACGAAACTGAGATTGTTGCATTGAGAGCTTTGGAATGAGCCCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAAACTCACTAAAATCCAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATATGGACCAAAACAGAGGGCCAAGGACAGGTGCTAATGGTCCATCAACCCCCCCCCTCATTTGTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTCTCAGATTCTAATCGGCTGAGCAATGTGTAATTAAGGTGAGATTGGAGTCTAGCATCTGCCGGACCTCTCTCATTTCCTTTGAGTCCTACAATGATAGATTAGGCATTAGGATGTTTCAAGGCTCATAACTCTGCTCAAAATCAATATTTCAAATTGAACCAAACAGAAAGATACAGTACTTGAAAAGG</canonical>
            <polymorphic>AGATGTGTAAAATTATCAAATTATGATTTCTAACATATAAATTGGAATTCCCGATGAAAAATGCTTCAAAATGACTATAAACACGGCGTACTTTGAGAAAATTGAAATGTTCAGAAAGGGTGGGGTACTGTCACTCATCAAATATCAACTTTTATAATTTGAAATTTACGAAACTGAGATTGTTGCATTGAGAGCTTTGGAATGAGCCCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTAYCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAAACTCACTAAAATCCAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATATGGACCAAAACAGAGGGCCAAGGACAGGTGCTAATGGTCCATCAACCCCCCCCCTCATTTGTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTCTCAGATTCTAATCGGCTGAGCAATGTGTAATTAAGGTGAGATTGGAGTCTAGCATCTGCCGGACCTCTCTCATTTCCTTTGAGTCCTACAATGATAGATTAGGCATTAGGATGTTTCAAGGCTCATAACTCTGCTCAAAATCAATATTTCAAATTGAACCAAACAGAAAGATACAGTACTTGAAAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTAACTTATCAATCATCAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAACCATCTGAATTGCTAGAC</pcr_primer_p2>
		<pcr_amplicon_size>909</pcr_amplicon_size>
		<canonical_amplicon>ACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCAGATGGTTG</canonical_amplicon>
		<polymorphic_amplicon>AYCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCAGATGGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32982</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>99004</contig_pos>
        <strand></strand>
        <context>attcaaaaat[T/G]cmATGAAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAAT</left_flank>
        <right_flank>CCATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATAT</right_flank>
        <qual_score>50</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTAACATATAAATTGGAATTCCCGATGAAAAATGCTTCAAAATGACTATAAACACGGCGTACTTTGAGAAAATTGAAATGTTCAGAAAGGGTGGGGTACTGTCACTCATCAAATATCAACTTTTATAATTTGAAATTTACGAAACTGAGATTGTTGCATTGAGAGCTTTGGAATGAGCCCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAAACTCACTAAAATCCAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATATGGACCAAAACAGAGGGCCAAGGACAGGTGCTAATGGTCCATCAACCCCCCCCCTCATTTGTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTCTCAGATTCTAATCGGCTGAGCAATGTGTAATTAAGGTGAGATTGGAGTCTAGCATCTGCCGGACCTCTCTCATTTCCTTTGAGTCCTACAATGATAGATTAGGCATTAGGATGTTTCAAGGCTCATAACTCTGCTCAAAATCAATATTTCAAATTGAACCAAACAGAAAGATACAGTACTTGAAAAGGGCTACAACATGACATACAACTCAATCAT</canonical>
            <polymorphic>TCTAACATATAAATTGGAATTCCCGATGAAAAATGCTTCAAAATGACTATAAACACGGCGTACTTTGAGAAAATTGAAATGTTCAGAAAGGGTGGGGTACTGTCACTCATCAAATATCAACTTTTATAATTTGAAATTTACGAAACTGAGATTGTTGCATTGAGAGCTTTGGAATGAGCCCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATKCCATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAAACTCACTAAAATCCAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATATGGACCAAAACAGAGGGCCAAGGACAGGTGCTAATGGTCCATCAACCCCCCCCCTCATTTGTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTCTCAGATTCTAATCGGCTGAGCAATGTGTAATTAAGGTGAGATTGGAGTCTAGCATCTGCCGGACCTCTCTCATTTCCTTTGAGTCCTACAATGATAGATTAGGCATTAGGATGTTTCAAGGCTCATAACTCTGCTCAAAATCAATATTTCAAATTGAACCAAACAGAAAGATACAGTACTTGAAAAGGGCTACAACATGACATACAACTCAATCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>414 151 117 96 90 53 24 19 17 11 8</canonical_bands>
                <polymorphic_bands>414 151 117 98 96 53 24 19 17 11</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>226 129 123 67 65 56 54 53 30 29 23 22 21 19 19 16 11 11 8 7 6 5</canonical_bands>
                <polymorphic_bands>226 129 123 67 65 56 54 53 31 30 29 22 21 19 19 16 11 11 7 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTAACTTATCAATCATCAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAAATATCCTTAGAAATTAGC</pcr_primer_p2>
		<pcr_amplicon_size>933</pcr_amplicon_size>
		<canonical_amplicon>TTCCATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>TKCCATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32983</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>99006</contig_pos>
        <strand></strand>
        <context>tcaaaaatkc[C/A]ATGAAAACTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTC</left_flank>
        <right_flank>ATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTT</right_flank>
        <qual_score>49</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACATATAAATTGGAATTCCCGATGAAAAATGCTTCAAAATGACTATAAACACGGCGTACTTTGAGAAAATTGAAATGTTCAGAAAGGGTGGGGTACTGTCACTCATCAAATATCAACTTTTATAATTTGAAATTTACGAAACTGAGATTGTTGCATTGAGAGCTTTGGAATGAGCCCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAAACTCACTAAAATCCAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATATGGACCAAAACAGAGGGCCAAGGACAGGTGCTAATGGTCCATCAACCCCCCCCCTCATTTGTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTCTCAGATTCTAATCGGCTGAGCAATGTGTAATTAAGGTGAGATTGGAGTCTAGCATCTGCCGGACCTCTCTCATTTCCTTTGAGTCCTACAATGATAGATTAGGCATTAGGATGTTTCAAGGCTCATAACTCTGCTCAAAATCAATATTTCAAATTGAACCAAACAGAAAGATACAGTACTTGAAAAGGGCTACAACATGACATACAACTCAATCATAC</canonical>
            <polymorphic>TAACATATAAATTGGAATTCCCGATGAAAAATGCTTCAAAATGACTATAAACACGGCGTACTTTGAGAAAATTGAAATGTTCAGAAAGGGTGGGGTACTGTCACTCATCAAATATCAACTTTTATAATTTGAAATTTACGAAACTGAGATTGTTGCATTGAGAGCTTTGGAATGAGCCCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCMATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAAACTCACTAAAATCCAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATATGGACCAAAACAGAGGGCCAAGGACAGGTGCTAATGGTCCATCAACCCCCCCCCTCATTTGTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTCTCAGATTCTAATCGGCTGAGCAATGTGTAATTAAGGTGAGATTGGAGTCTAGCATCTGCCGGACCTCTCTCATTTCCTTTGAGTCCTACAATGATAGATTAGGCATTAGGATGTTTCAAGGCTCATAACTCTGCTCAAAATCAATATTTCAAATTGAACCAAACAGAAAGATACAGTACTTGAAAAGGGCTACAACATGACATACAACTCAATCATAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>478 421 55 24 22</canonical_bands>
                <polymorphic_bands>533 421 24 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTAACTTATCAATCATCAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>GGAAATTCTGGATTTTAGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>969</pcr_amplicon_size>
		<canonical_amplicon>CCATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAAACTCACTAAAATCCAGAATTTCC</canonical_amplicon>
		<polymorphic_amplicon>CMATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAAACTCACTAAAATCCAGAATTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32984</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>99075</contig_pos>
        <strand>+</strand>
        <context>AGGAAAAAAA[A/G]CTCACTAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAA</left_flank>
        <right_flank>CTCACTAAAATCCAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGAAATGTTCAGAAAGGGTGGGGTACTGTCACTCATCAAATATCAACTTTTATAATTTGAAATTTACGAAACTGAGATTGTTGCATTGAGAGCTTTGGAATGAGCCCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAAACTCACTAAAATCCAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATATGGACCAAAACAGAGGGCCAAGGACAGGTGCTAATGGTCCATCAACCCCCCCCCTCATTTGTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTCTCAGATTCTAATCGGCTGAGCAATGTGTAATTAAGGTGAGATTGGAGTCTAGCATCTGCCGGACCTCTCTCATTTCCTTTGAGTCCTACAATGATAGATTAGGCATTAGGATGTTTCAAGGCTCATAACTCTGCTCAAAATCAATATTTCAAATTGAACCAAACAGAAAGATACAGTACTTGAAAAGGGCTACAACATGACATACAACTCAATCATACTGTACTCATGGTTTTTTAGGTCTAGGTGATTAAAAAAGTATGGAAAAATCGTCCAGCTTAGGTTTCTTG</canonical>
            <polymorphic>AATTGAAATGTTCAGAAAGGGTGGGGTACTGTCACTCATCAAATATCAACTTTTATAATTTGAAATTTACGAAACTGAGATTGTTGCATTGAGAGCTTTGGAATGAGCCCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAARCTCACTAAAATCCAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATATGGACCAAAACAGAGGGCCAAGGACAGGTGCTAATGGTCCATCAACCCCCCCCCTCATTTGTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTCTCAGATTCTAATCGGCTGAGCAATGTGTAATTAAGGTGAGATTGGAGTCTAGCATCTGCCGGACCTCTCTCATTTCCTTTGAGTCCTACAATGATAGATTAGGCATTAGGATGTTTCAAGGCTCATAACTCTGCTCAAAATCAATATTTCAAATTGAACCAAACAGAAAGATACAGTACTTGAAAAGGGCTACAACATGACATACAACTCAATCATACTGTACTCATGGTTTTTTAGGTCTAGGTGATTAAAAAAGTATGGAAAAATCGTCCAGCTTAGGTTTCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTCAGATGGTTGCTAATTT</pcr_primer_p1>
		<pcr_primer_p2>AGCCGATTAGAATCTGAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>283</pcr_amplicon_size>
		<canonical_amplicon>CAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAAACTCACTAAAATCCAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATATGGACCAAAACAGAGGGCCAAGGACAGGTGCTAATGGTCCATCAACCCCCCCCCTCATTTGTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTCTCAGATTCTAATCGGCT</canonical_amplicon>
		<polymorphic_amplicon>CAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAARCTCACTAAAATCCAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATATGGACCAAAACAGAGGGCCAAGGACAGGTGCTAATGGTCCATCAACCCCCCCCCTCATTTGTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTCTCAGATTCTAATCGGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32985</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>99171</contig_pos>
        <strand>+</strand>
        <context>GCGCGTAATA[C/T]GGACCAAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATA</left_flank>
        <right_flank>GGACCAAAACAGAGGGCCAAGGACAGGTGCTAATGGTCCATCAACCCCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGAATGAGCCCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAAACTCACTAAAATCCAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATATGGACCAAAACAGAGGGCCAAGGACAGGTGCTAATGGTCCATCAACCCCCCCCCTCATTTGTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTCTCAGATTCTAATCGGCTGAGCAATGTGTAATTAAGGTGAGATTGGAGTCTAGCATCTGCCGGACCTCTCTCATTTCCTTTGAGTCCTACAATGATAGATTAGGCATTAGGATGTTTCAAGGCTCATAACTCTGCTCAAAATCAATATTTCAAATTGAACCAAACAGAAAGATACAGTACTTGAAAAGGGCTACAACATGACATACAACTCAATCATACTGTACTCATGGTTTTTTAGGTCTAGGTGATTAAAAAAGTATGGAAAAATCGTCCAGCTTAGGTTTCTTGGGGTCAAAAACTGCATGGCCCATAACTTTGCTCAAAATTGGAATTTTGAGCCGAGTTAAAAACTAAAATGTAGAATCTAAAAAGAGCTACAAAATG</canonical>
            <polymorphic>TTTGGAATGAGCCCAAACACGACATATTTCTGACAATTTTGATTTTCAGACTTTTTCAGGCCGAATTTGGCTGAAAATCTGGAATTTTTGAAATATAACGTGTTTAGGCTCATTTTGAAGCCTATAAAAGTGCCAAATTCAGAACTTTCAGAAAAATTGAATTTGTTCAAAATTTGGACAAGTTATGTCTATTTTTCCTATTTTTGCGCATTTTTGCCCATTTTAGCCCAAAACTCTAGATTTTCCAAAATGGGTCATGTTTAGGCTCATTTTGAAGCTCATGATGTGTTAAACTTGAAAATTACCATTTTGAAGTTCGAAAATTCAAAAATTCCATGAAAACTTGTCTAGCAATTCAGATGGTTGCTAATTTCTAAGGATATTTTCAAAATTAGGAAAAAAAACTCACTAAAATCCAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATAYGGACCAAAACAGAGGGCCAAGGACAGGTGCTAATGGTCCATCAACCCCCCCCCTCATTTGTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTCTCAGATTCTAATCGGCTGAGCAATGTGTAATTAAGGTGAGATTGGAGTCTAGCATCTGCCGGACCTCTCTCATTTCCTTTGAGTCCTACAATGATAGATTAGGCATTAGGATGTTTCAAGGCTCATAACTCTGCTCAAAATCAATATTTCAAATTGAACCAAACAGAAAGATACAGTACTTGAAAAGGGCTACAACATGACATACAACTCAATCATACTGTACTCATGGTTTTTTAGGTCTAGGTGATTAAAAAAGTATGGAAAAATCGTCCAGCTTAGGTTTCTTGGGGTCAAAAACTGCATGGCCCATAACTTTGCTCAAAATTGGAATTTTGAGCCGAGTTAAAAACTAAAATGTAGAATCTAAAAAGAGCTACAAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAATTTCCGTCAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>CTCCAATCTCACCTTAATTACAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATATGGACCAAAACAGAGGGCCAAGGACAGGTGCTAATGGTCCATCAACCCCCCCCCTCATTTGTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTCTCAGATTCTAATCGGCTGAGCAATGTGTAATTAAGGTGAGATTGGAG</canonical_amplicon>
		<polymorphic_amplicon>CAGAATTTCCGTCAAAAATCCATTGAAATCGATCGCAAAGGAATAGCAGAGTGGACCAGAAAATGTGTGTGGTGCGCGTAATAYGGACCAAAACAGAGGGCCAAGGACAGGTGCTAATGGTCCATCAACCCCCCCCCTCATTTGTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATTTCTCAGATTCTAATCGGCTGAGCAATGTGTAATTAAGGTGAGATTGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32986</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>101731</contig_pos>
        <strand>+</strand>
        <context>TATTTCAAAG[C/T]TTTTGAATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCACCCAGACTTCTTGATTGCTCATCCTTAAATTTTCTGATATTTCAAAG</left_flank>
        <right_flank>TTTTGAATTCCACTTCTGGACATTTATCAGTATTTTCAGATTTTTCAGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATTCGTTGACATGTTTCATGAAAAAATAGGCATTTTCGCAGTTTTCAGAGCAAATTGAGCATTGAAATGGAGCATTTTTGGTGTGAAATAGGCGGTGGAGCACGAAAATTGTCTCATCGGTGTAGGAAATTTGGCAGTCGAGGCATGGCTGAAAATTTCAGATTTTTTGAATTTTTTGTTTTTTGGAATTTTGGGAATATTTTTAATTCCGGATTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTATGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTCTGAATTTTAAAGTTTTTGAAAGTTTTGGAATTTCATAATTTGTTTCTCACCCAGACTTCTTGATTGCTCATCCTTAAATTTTCTGATATTTCAAAGCTTTTGAATTCCACTTCTGGACATTTATCAGTATTTTCAGATTTTTCAGAATCTTCGAAAGCCTGAAGTTTGCAATTTTGTGAAAAATTTTTGTTTTAATACCTCGATCTCAAAATCCATCGGGGGCTCTGGAGAAGCAGATATTTCTGGAATCTGAAAGTCTCAACATCATAAAAACATTCTTTTTTTTCCCAAAAATCACACAATTACCTCCATAGGGCTTGCTGGAGCTTCTGAAGACGAACTGAAGCATCCGAAACTCTGAAACTTCAATAAATTAAAATTTTCTGAAATTTGAAAAAAAAATAAATATTTTCCAAAAATTGTTTTTCCAAATTTCCAAAACTCACCTCAAACTTGCAATTGCTCATCTGATGACGTTTTAGGCCAAACTTATGGCTAAATCGAGCATGGCAAACATCACATTCTGGCATTATCTGCCCCGGTTTTTGATGAGCAATCTGAGCAAAAAACATGACCACAGGGACCCAGGGACCCAGG</canonical>
            <polymorphic>GGATTCGTTGACATGTTTCATGAAAAAATAGGCATTTTCGCAGTTTTCAGAGCAAATTGAGCATTGAAATGGAGCATTTTTGGTGTGAAATAGGCGGTGGAGCACGAAAATTGTCTCATCGGTGTAGGAAATTTGGCAGTCGAGGCATGGCTGAAAATTTCAGATTTTTTGAATTTTTTGTTTTTTGGAATTTTGGGAATATTTTTAATTCCGGATTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTATGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTCTGAATTTTAAAGTTTTTGAAAGTTTTGGAATTTCATAATTTGTTTCTCACCCAGACTTCTTGATTGCTCATCCTTAAATTTTCTGATATTTCAAAGYTTTTGAATTCCACTTCTGGACATTTATCAGTATTTTCAGATTTTTCAGAATCTTCGAAAGCCTGAAGTTTGCAATTTTGTGAAAAATTTTTGTTTTAATACCTCGATCTCAAAATCCATCGGGGGCTCTGGAGAAGCAGATATTTCTGGAATCTGAAAGTCTCAACATCATAAAAACATTCTTTTTTTTCCCAAAAATCACACAATTACCTCCATAGGGCTTGCTGGAGCTTCTGAAGACGAACTGAAGCATCCGAAACTCTGAAACTTCAATAAATTAAAATTTTCTGAAATTTGAAAAAAAAATAAATATTTTCCAAAAATTGTTTTTCCAAATTTCCAAAACTCACCTCAAACTTGCAATTGCTCATCTGATGACGTTTTAGGCCAAACTTATGGCTAAATCGAGCATGGCAAACATCACATTCTGGCATTATCTGCCCCGGTTTTTGATGAGCAATCTGAGCAAAAAACATGACCACAGGGACCCAGGGACCCAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>499 271 230</canonical_bands>
                <polymorphic_bands>729 271</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>349 157 150 102 94 65 61 12 10</canonical_bands>
                <polymorphic_bands>410 157 150 102 94 65 12 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCACCCAGACTTCTTGATTG</pcr_primer_p1>
		<pcr_primer_p2>GAGACTTTCAGATTCCAGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>214</pcr_amplicon_size>
		<canonical_amplicon>TCACCCAGACTTCTTGATTGCTCATCCTTAAATTTTCTGATATTTCAAAGCTTTTGAATTCCACTTCTGGACATTTATCAGTATTTTCAGATTTTTCAGAATCTTCGAAAGCCTGAAGTTTGCAATTTTGTGAAAAATTTTTGTTTTAATACCTCGATCTCAAAATCCATCGGGGGCTCTGGAGAAGCAGATATTTCTGGAATCTGAAAGTCTC</canonical_amplicon>
		<polymorphic_amplicon>TCACCCAGACTTCTTGATTGCTCATCCTTAAATTTTCTGATATTTCAAAGYTTTTGAATTCCACTTCTGGACATTTATCAGTATTTTCAGATTTTTCAGAATCTTCGAAAGCCTGAAGTTTGCAATTTTGTGAAAAATTTTTGTTTTAATACCTCGATCTCAAAATCCATCGGGGGCTCTGGAGAAGCAGATATTTCTGGAATCTGAAAGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32987</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>101818</contig_pos>
        <strand>+</strand>
        <context>TTGTGAAAAA[A/T]TTTTGTTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGATTTTTCAGAATCTTCGAAAGCCTGAAGTTTGCAATTTTGTGAAAAA</left_flank>
        <right_flank>TTTTGTTTTAATACCTCGATCTCAAAATCCATCGGGGGCTCTGGAGAAGC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATAGGCGGTGGAGCACGAAAATTGTCTCATCGGTGTAGGAAATTTGGCAGTCGAGGCATGGCTGAAAATTTCAGATTTTTTGAATTTTTTGTTTTTTGGAATTTTGGGAATATTTTTAATTCCGGATTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTATGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTCTGAATTTTAAAGTTTTTGAAAGTTTTGGAATTTCATAATTTGTTTCTCACCCAGACTTCTTGATTGCTCATCCTTAAATTTTCTGATATTTCAAAGCTTTTGAATTCCACTTCTGGACATTTATCAGTATTTTCAGATTTTTCAGAATCTTCGAAAGCCTGAAGTTTGCAATTTTGTGAAAAATTTTTGTTTTAATACCTCGATCTCAAAATCCATCGGGGGCTCTGGAGAAGCAGATATTTCTGGAATCTGAAAGTCTCAACATCATAAAAACATTCTTTTTTTTCCCAAAAATCACACAATTACCTCCATAGGGCTTGCTGGAGCTTCTGAAGACGAACTGAAGCATCCGAAACTCTGAAACTTCAATAAATTAAAATTTTCTGAAATTTGAAAAAAAAATAAATATTTTCCAAAAATTGTTTTTCCAAATTTCCAAAACTCACCTCAAACTTGCAATTGCTCATCTGATGACGTTTTAGGCCAAACTTATGGCTAAATCGAGCATGGCAAACATCACATTCTGGCATTATCTGCCCCGGTTTTTGATGAGCAATCTGAGCAAAAAACATGACCACAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAG</canonical>
            <polymorphic>AAATAGGCGGTGGAGCACGAAAATTGTCTCATCGGTGTAGGAAATTTGGCAGTCGAGGCATGGCTGAAAATTTCAGATTTTTTGAATTTTTTGTTTTTTGGAATTTTGGGAATATTTTTAATTCCGGATTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTATGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTCTGAATTTTAAAGTTTTTGAAAGTTTTGGAATTTCATAATTTGTTTCTCACCCAGACTTCTTGATTGCTCATCCTTAAATTTTCTGATATTTCAAAGCTTTTGAATTCCACTTCTGGACATTTATCAGTATTTTCAGATTTTTCAGAATCTTCGAAAGCCTGAAGTTTGCAATTTTGTGAAAAAWTTTTGTTTTAATACCTCGATCTCAAAATCCATCGGGGGCTCTGGAGAAGCAGATATTTCTGGAATCTGAAAGTCTCAACATCATAAAAACATTCTTTTTTTTCCCAAAAATCACACAATTACCTCCATAGGGCTTGCTGGAGCTTCTGAAGACGAACTGAAGCATCCGAAACTCTGAAACTTCAATAAATTAAAATTTTCTGAAATTTGAAAAAAAAATAAATATTTTCCAAAAATTGTTTTTCCAAATTTCCAAAACTCACCTCAAACTTGCAATTGCTCATCTGATGACGTTTTAGGCCAAACTTATGGCTAAATCGAGCATGGCAAACATCACATTCTGGCATTATCTGCCCCGGTTTTTGATGAGCAATCTGAGCAAAAAACATGACCACAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>254 196 79 48 43 42 34 26 26 26 17 16 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>275 254 48 43 42 34 26 26 26 17 16 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>227 119 71 67 40 30 27 26 26 26 21 21 18 17 16 16 13 12 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 6</canonical_bands>
                <polymorphic_bands>227 131 71 67 40 30 27 26 26 26 21 21 18 17 16 16 13 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTGCTCATCCTTAAATTTTCT</pcr_primer_p1>
		<pcr_primer_p2>TATGGAGGTAATTGTGTGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GATTGCTCATCCTTAAATTTTCTGATATTTCAAAGCTTTTGAATTCCACTTCTGGACATTTATCAGTATTTTCAGATTTTTCAGAATCTTCGAAAGCCTGAAGTTTGCAATTTTGTGAAAAATTTTTGTTTTAATACCTCGATCTCAAAATCCATCGGGGGCTCTGGAGAAGCAGATATTTCTGGAATCTGAAAGTCTCAACATCATAAAAACATTCTTTTTTTTCCCAAAAATCACACAATTACCTCCATA</canonical_amplicon>
		<polymorphic_amplicon>GATTGCTCATCCTTAAATTTTCTGATATTTCAAAGCTTTTGAATTCCACTTCTGGACATTTATCAGTATTTTCAGATTTTTCAGAATCTTCGAAAGCCTGAAGTTTGCAATTTTGTGAAAAAWTTTTGTTTTAATACCTCGATCTCAAAATCCATCGGGGGCTCTGGAGAAGCAGATATTTCTGGAATCTGAAAGTCTCAACATCATAAAAACATTCTTTTTTTTCCCAAAAATCACACAATTACCTCCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32988</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>101897</contig_pos>
        <strand>+</strand>
        <context>AAAGTCTCAA[A/C]ATCATAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCATCGGGGGCTCTGGAGAAGCAGATATTTCTGGAATCTGAAAGTCTCAA</left_flank>
        <right_flank>ATCATAAAAACATTCTTTTTTTTCCCAAAAATCACACAATTACCTCCATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGAATTTTTTGTTTTTTGGAATTTTGGGAATATTTTTAATTCCGGATTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTATGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTCTGAATTTTAAAGTTTTTGAAAGTTTTGGAATTTCATAATTTGTTTCTCACCCAGACTTCTTGATTGCTCATCCTTAAATTTTCTGATATTTCAAAGCTTTTGAATTCCACTTCTGGACATTTATCAGTATTTTCAGATTTTTCAGAATCTTCGAAAGCCTGAAGTTTGCAATTTTGTGAAAAATTTTTGTTTTAATACCTCGATCTCAAAATCCATCGGGGGCTCTGGAGAAGCAGATATTTCTGGAATCTGAAAGTCTCAACATCATAAAAACATTCTTTTTTTTCCCAAAAATCACACAATTACCTCCATAGGGCTTGCTGGAGCTTCTGAAGACGAACTGAAGCATCCGAAACTCTGAAACTTCAATAAATTAAAATTTTCTGAAATTTGAAAAAAAAATAAATATTTTCCAAAAATTGTTTTTCCAAATTTCCAAAACTCACCTCAAACTTGCAATTGCTCATCTGATGACGTTTTAGGCCAAACTTATGGCTAAATCGAGCATGGCAAACATCACATTCTGGCATTATCTGCCCCGGTTTTTGATGAGCAATCTGAGCAAAAAACATGACCACAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCATGGACCCA</canonical>
            <polymorphic>TTTTGAATTTTTTGTTTTTTGGAATTTTGGGAATATTTTTAATTCCGGATTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTATGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTCTGAATTTTAAAGTTTTTGAAAGTTTTGGAATTTCATAATTTGTTTCTCACCCAGACTTCTTGATTGCTCATCCTTAAATTTTCTGATATTTCAAAGCTTTTGAATTCCACTTCTGGACATTTATCAGTATTTTCAGATTTTTCAGAATCTTCGAAAGCCTGAAGTTTGCAATTTTGTGAAAAATTTTTGTTTTAATACCTCGATCTCAAAATCCATCGGGGGCTCTGGAGAAGCAGATATTTCTGGAATCTGAAAGTCTCAAMATCATAAAAACATTCTTTTTTTTCCCAAAAATCACACAATTACCTCCATAGGGCTTGCTGGAGCTTCTGAAGACGAACTGAAGCATCCGAAACTCTGAAACTTCAATAAATTAAAATTTTCTGAAATTTGAAAAAAAAATAAATATTTTCCAAAAATTGTTTTTCCAAATTTCCAAAACTCACCTCAAACTTGCAATTGCTCATCTGATGACGTTTTAGGCCAAACTTATGGCTAAATCGAGCATGGCAAACATCACATTCTGGCATTATCTGCCCCGGTTTTTGATGAGCAATCTGAGCAAAAAACATGACCACAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCATGGACCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTTTTAATACCTCGATCTCAA</pcr_primer_p1>
		<pcr_primer_p2>GGAAATTTGGAAAAACAATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTGTTTTAATACCTCGATCTCAAAATCCATCGGGGGCTCTGGAGAAGCAGATATTTCTGGAATCTGAAAGTCTCAACATCATAAAAACATTCTTTTTTTTCCCAAAAATCACACAATTACCTCCATAGGGCTTGCTGGAGCTTCTGAAGACGAACTGAAGCATCCGAAACTCTGAAACTTCAATAAATTAAAATTTTCTGAAATTTGAAAAAAAAATAAATATTTTCCAAAAATTGTTTTTCCAAATTTCC</canonical_amplicon>
		<polymorphic_amplicon>TTGTTTTAATACCTCGATCTCAAAATCCATCGGGGGCTCTGGAGAAGCAGATATTTCTGGAATCTGAAAGTCTCAAMATCATAAAAACATTCTTTTTTTTCCCAAAAATCACACAATTACCTCCATAGGGCTTGCTGGAGCTTCTGAAGACGAACTGAAGCATCCGAAACTCTGAAACTTCAATAAATTAAAATTTTCTGAAATTTGAAAAAAAAATAAATATTTTCCAAAAATTGTTTTTCCAAATTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32989</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>101913</contig_pos>
        <strand>+</strand>
        <context>AAAAACATTC[A/C]TTTTTTTCCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAAGCAGATATTTCTGGAATCTGAAAGTCTCAACATCATAAAAACATTC</left_flank>
        <right_flank>TTTTTTTCCCAAAAATCACACAATTACCTCCATAGGGCTTGCTGGAGCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGGAATTTTGGGAATATTTTTAATTCCGGATTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTATGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTCTGAATTTTAAAGTTTTTGAAAGTTTTGGAATTTCATAATTTGTTTCTCACCCAGACTTCTTGATTGCTCATCCTTAAATTTTCTGATATTTCAAAGCTTTTGAATTCCACTTCTGGACATTTATCAGTATTTTCAGATTTTTCAGAATCTTCGAAAGCCTGAAGTTTGCAATTTTGTGAAAAATTTTTGTTTTAATACCTCGATCTCAAAATCCATCGGGGGCTCTGGAGAAGCAGATATTTCTGGAATCTGAAAGTCTCAACATCATAAAAACATTCTTTTTTTTCCCAAAAATCACACAATTACCTCCATAGGGCTTGCTGGAGCTTCTGAAGACGAACTGAAGCATCCGAAACTCTGAAACTTCAATAAATTAAAATTTTCTGAAATTTGAAAAAAAAATAAATATTTTCCAAAAATTGTTTTTCCAAATTTCCAAAACTCACCTCAAACTTGCAATTGCTCATCTGATGACGTTTTAGGCCAAACTTATGGCTAAATCGAGCATGGCAAACATCACATTCTGGCATTATCTGCCCCGGTTTTTGATGAGCAATCTGAGCAAAAAACATGACCACAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCATGGACCCAGGGACCCAGGGACCCA</canonical>
            <polymorphic>TTTTGGAATTTTGGGAATATTTTTAATTCCGGATTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTATGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTCTGAATTTTAAAGTTTTTGAAAGTTTTGGAATTTCATAATTTGTTTCTCACCCAGACTTCTTGATTGCTCATCCTTAAATTTTCTGATATTTCAAAGCTTTTGAATTCCACTTCTGGACATTTATCAGTATTTTCAGATTTTTCAGAATCTTCGAAAGCCTGAAGTTTGCAATTTTGTGAAAAATTTTTGTTTTAATACCTCGATCTCAAAATCCATCGGGGGCTCTGGAGAAGCAGATATTTCTGGAATCTGAAAGTCTCAACATCATAAAAACATTCMTTTTTTTCCCAAAAATCACACAATTACCTCCATAGGGCTTGCTGGAGCTTCTGAAGACGAACTGAAGCATCCGAAACTCTGAAACTTCAATAAATTAAAATTTTCTGAAATTTGAAAAAAAAATAAATATTTTCCAAAAATTGTTTTTCCAAATTTCCAAAACTCACCTCAAACTTGCAATTGCTCATCTGATGACGTTTTAGGCCAAACTTATGGCTAAATCGAGCATGGCAAACATCACATTCTGGCATTATCTGCCCCGGTTTTTGATGAGCAATCTGAGCAAAAAACATGACCACAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCATGGACCCAGGGACCCAGGGACCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTTTTAATACCTCGATCTCAA</pcr_primer_p1>
		<pcr_primer_p2>GGAAATTTGGAAAAACAATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTGTTTTAATACCTCGATCTCAAAATCCATCGGGGGCTCTGGAGAAGCAGATATTTCTGGAATCTGAAAGTCTCAACATCATAAAAACATTCTTTTTTTTCCCAAAAATCACACAATTACCTCCATAGGGCTTGCTGGAGCTTCTGAAGACGAACTGAAGCATCCGAAACTCTGAAACTTCAATAAATTAAAATTTTCTGAAATTTGAAAAAAAAATAAATATTTTCCAAAAATTGTTTTTCCAAATTTCC</canonical_amplicon>
		<polymorphic_amplicon>TTGTTTTAATACCTCGATCTCAAAATCCATCGGGGGCTCTGGAGAAGCAGATATTTCTGGAATCTGAAAGTCTCAACATCATAAAAACATTCMTTTTTTTCCCAAAAATCACACAATTACCTCCATAGGGCTTGCTGGAGCTTCTGAAGACGAACTGAAGCATCCGAAACTCTGAAACTTCAATAAATTAAAATTTTCTGAAATTTGAAAAAAAAATAAATATTTTCCAAAAATTGTTTTTCCAAATTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32990</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>101959</contig_pos>
        <strand></strand>
        <context>GGCTTGCTGG[A/C]GCTTCTGAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTCTTTTTTTTCCCAAAAATCACACAATTACCTCCATAGGGCTTGCTGG</left_flank>
        <right_flank>GCTTCTGAAGACGAACTGAAGCATCCGAAACTCTGAAACTTCAATAAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTATGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTCTGAATTTTAAAGTTTTTGAAAGTTTTGGAATTTCATAATTTGTTTCTCACCCAGACTTCTTGATTGCTCATCCTTAAATTTTCTGATATTTCAAAGCTTTTGAATTCCACTTCTGGACATTTATCAGTATTTTCAGATTTTTCAGAATCTTCGAAAGCCTGAAGTTTGCAATTTTGTGAAAAATTTTTGTTTTAATACCTCGATCTCAAAATCCATCGGGGGCTCTGGAGAAGCAGATATTTCTGGAATCTGAAAGTCTCAACATCATAAAAACATTCTTTTTTTTCCCAAAAATCACACAATTACCTCCATAGGGCTTGCTGGAGCTTCTGAAGACGAACTGAAGCATCCGAAACTCTGAAACTTCAATAAATTAAAATTTTCTGAAATTTGAAAAAAAAATAAATATTTTCCAAAAATTGTTTTTCCAAATTTCCAAAACTCACCTCAAACTTGCAATTGCTCATCTGATGACGTTTTAGGCCAAACTTATGGCTAAATCGAGCATGGCAAACATCACATTCTGGCATTATCTGCCCCGGTTTTTGATGAGCAATCTGAGCAAAAAACATGACCACAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCATGGACCCAGGGACCCAGGGACCCATGGACCCAGGGACCCAGGGACCACCAGGGAAAAATATTCCGGACCT</canonical>
            <polymorphic>TGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTATGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTCTGAATTTTAAAGTTTTTGAAAGTTTTGGAATTTCATAATTTGTTTCTCACCCAGACTTCTTGATTGCTCATCCTTAAATTTTCTGATATTTCAAAGCTTTTGAATTCCACTTCTGGACATTTATCAGTATTTTCAGATTTTTCAGAATCTTCGAAAGCCTGAAGTTTGCAATTTTGTGAAAAATTTTTGTTTTAATACCTCGATCTCAAAATCCATCGGGGGCTCTGGAGAAGCAGATATTTCTGGAATCTGAAAGTCTCAACATCATAAAAACATTCTTTTTTTTCCCAAAAATCACACAATTACCTCCATAGGGCTTGCTGGMGCTTCTGAAGACGAACTGAAGCATCCGAAACTCTGAAACTTCAATAAATTAAAATTTTCTGAAATTTGAAAAAAAAATAAATATTTTCCAAAAATTGTTTTTCCAAATTTCCAAAACTCACCTCAAACTTGCAATTGCTCATCTGATGACGTTTTAGGCCAAACTTATGGCTAAATCGAGCATGGCAAACATCACATTCTGGCATTATCTGCCCCGGTTTTTGATGAGCAATCTGAGCAAAAAACATGACCACAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCATGGACCCAGGGACCCAGGGACCCATGGACCCAGGGACCCAGGGACCACCAGGGAAAAATATTCCGGACCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>499 271 230</canonical_bands>
                <polymorphic_bands>729 271</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>330 271 157 94 65 61 12 10</canonical_bands>
                <polymorphic_bands>330 271 167 94 65 61 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTTTTAATACCTCGATCTCAA</pcr_primer_p1>
		<pcr_primer_p2>GGAAATTTGGAAAAACAATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTGTTTTAATACCTCGATCTCAAAATCCATCGGGGGCTCTGGAGAAGCAGATATTTCTGGAATCTGAAAGTCTCAACATCATAAAAACATTCTTTTTTTTCCCAAAAATCACACAATTACCTCCATAGGGCTTGCTGGAGCTTCTGAAGACGAACTGAAGCATCCGAAACTCTGAAACTTCAATAAATTAAAATTTTCTGAAATTTGAAAAAAAAATAAATATTTTCCAAAAATTGTTTTTCCAAATTTCC</canonical_amplicon>
		<polymorphic_amplicon>TTGTTTTAATACCTCGATCTCAAAATCCATCGGGGGCTCTGGAGAAGCAGATATTTCTGGAATCTGAAAGTCTCAACATCATAAAAACATTCTTTTTTTTCCCAAAAATCACACAATTACCTCCATAGGGCTTGCTGGMGCTTCTGAAGACGAACTGAAGCATCCGAAACTCTGAAACTTCAATAAATTAAAATTTTCTGAAATTTGAAAAAAAAATAAATATTTTCCAAAAATTGTTTTTCCAAATTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32991</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>101978</contig_pos>
        <strand>+</strand>
        <context>AGACGAACTG[A/G]AGCATCCGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCACACAATTACCTCCATAGGGCTTGCTGGAGCTTCTGAAGACGAACTG</left_flank>
        <right_flank>AGCATCCGAAACTCTGAAACTTCAATAAATTAAAATTTTCTGAAATTTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTATGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTCTGAATTTTAAAGTTTTTGAAAGTTTTGGAATTTCATAATTTGTTTCTCACCCAGACTTCTTGATTGCTCATCCTTAAATTTTCTGATATTTCAAAGCTTTTGAATTCCACTTCTGGACATTTATCAGTATTTTCAGATTTTTCAGAATCTTCGAAAGCCTGAAGTTTGCAATTTTGTGAAAAATTTTTGTTTTAATACCTCGATCTCAAAATCCATCGGGGGCTCTGGAGAAGCAGATATTTCTGGAATCTGAAAGTCTCAACATCATAAAAACATTCTTTTTTTTCCCAAAAATCACACAATTACCTCCATAGGGCTTGCTGGAGCTTCTGAAGACGAACTGAAGCATCCGAAACTCTGAAACTTCAATAAATTAAAATTTTCTGAAATTTGAAAAAAAAATAAATATTTTCCAAAAATTGTTTTTCCAAATTTCCAAAACTCACCTCAAACTTGCAATTGCTCATCTGATGACGTTTTAGGCCAAACTTATGGCTAAATCGAGCATGGCAAACATCACATTCTGGCATTATCTGCCCCGGTTTTTGATGAGCAATCTGAGCAAAAAACATGACCACAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCATGGACCCAGGGACCCAGGGACCCATGGACCCAGGGACCCAGGGACCACCAGGGAAAAATATTCCGGACCTACCGTATGCCTTTTCAACC</canonical>
            <polymorphic>ATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTATGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTCTGAATTTTAAAGTTTTTGAAAGTTTTGGAATTTCATAATTTGTTTCTCACCCAGACTTCTTGATTGCTCATCCTTAAATTTTCTGATATTTCAAAGCTTTTGAATTCCACTTCTGGACATTTATCAGTATTTTCAGATTTTTCAGAATCTTCGAAAGCCTGAAGTTTGCAATTTTGTGAAAAATTTTTGTTTTAATACCTCGATCTCAAAATCCATCGGGGGCTCTGGAGAAGCAGATATTTCTGGAATCTGAAAGTCTCAACATCATAAAAACATTCTTTTTTTTCCCAAAAATCACACAATTACCTCCATAGGGCTTGCTGGAGCTTCTGAAGACGAACTGRAGCATCCGAAACTCTGAAACTTCAATAAATTAAAATTTTCTGAAATTTGAAAAAAAAATAAATATTTTCCAAAAATTGTTTTTCCAAATTTCCAAAACTCACCTCAAACTTGCAATTGCTCATCTGATGACGTTTTAGGCCAAACTTATGGCTAAATCGAGCATGGCAAACATCACATTCTGGCATTATCTGCCCCGGTTTTTGATGAGCAATCTGAGCAAAAAACATGACCACAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCATGGACCCAGGGACCCAGGGACCCATGGACCCAGGGACCCAGGGACCACCAGGGAAAAATATTCCGGACCTACCGTATGCCTTTTCAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCACACAATTACCTCCATA</pcr_primer_p1>
		<pcr_primer_p2>AGATAATGCCAGAATGTGATGT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAAATCACACAATTACCTCCATAGGGCTTGCTGGAGCTTCTGAAGACGAACTGAAGCATCCGAAACTCTGAAACTTCAATAAATTAAAATTTTCTGAAATTTGAAAAAAAAATAAATATTTTCCAAAAATTGTTTTTCCAAATTTCCAAAACTCACCTCAAACTTGCAATTGCTCATCTGATGACGTTTTAGGCCAAACTTATGGCTAAATCGAGCATGGCAAACATCACATTCTGGCATTATCT</canonical_amplicon>
		<polymorphic_amplicon>AAAATCACACAATTACCTCCATAGGGCTTGCTGGAGCTTCTGAAGACGAACTGRAGCATCCGAAACTCTGAAACTTCAATAAATTAAAATTTTCTGAAATTTGAAAAAAAAATAAATATTTTCCAAAAATTGTTTTTCCAAATTTCCAAAACTCACCTCAAACTTGCAATTGCTCATCTGATGACGTTTTAGGCCAAACTTATGGCTAAATCGAGCATGGCAAACATCACATTCTGGCATTATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32992</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>102002</contig_pos>
        <strand></strand>
        <context>CTGAAACTTC[A/C]ataaattaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGCTGGAGCTTCTGAAGACGAACTGAAGCATCCGAAACTCTGAAACTTC</left_flank>
        <right_flank>ATAAATTAAAATTTTCTGAAATTTGAAAAAAAAATAAATATTTTCCAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCAGAATTTCTGAATTTATGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTCTGAATTTTAAAGTTTTTGAAAGTTTTGGAATTTCATAATTTGTTTCTCACCCAGACTTCTTGATTGCTCATCCTTAAATTTTCTGATATTTCAAAGCTTTTGAATTCCACTTCTGGACATTTATCAGTATTTTCAGATTTTTCAGAATCTTCGAAAGCCTGAAGTTTGCAATTTTGTGAAAAATTTTTGTTTTAATACCTCGATCTCAAAATCCATCGGGGGCTCTGGAGAAGCAGATATTTCTGGAATCTGAAAGTCTCAACATCATAAAAACATTCTTTTTTTTCCCAAAAATCACACAATTACCTCCATAGGGCTTGCTGGAGCTTCTGAAGACGAACTGAAGCATCCGAAACTCTGAAACTTCAATAAATTAAAATTTTCTGAAATTTGAAAAAAAAATAAATATTTTCCAAAAATTGTTTTTCCAAATTTCCAAAACTCACCTCAAACTTGCAATTGCTCATCTGATGACGTTTTAGGCCAAACTTATGGCTAAATCGAGCATGGCAAACATCACATTCTGGCATTATCTGCCCCGGTTTTTGATGAGCAATCTGAGCAAAAAACATGACCACAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCATGGACCCAGGGACCCAGGGACCCATGGACCCAGGGACCCAGGGACCACCAGGGAAAAATATTCCGGACCTACCGTATGCCTTTTCAACCTTTTCTGATCGTCGGTTTTGTAAT</canonical>
            <polymorphic>ATTTCAGAATTTCTGAATTTATGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTCTGAATTTTAAAGTTTTTGAAAGTTTTGGAATTTCATAATTTGTTTCTCACCCAGACTTCTTGATTGCTCATCCTTAAATTTTCTGATATTTCAAAGCTTTTGAATTCCACTTCTGGACATTTATCAGTATTTTCAGATTTTTCAGAATCTTCGAAAGCCTGAAGTTTGCAATTTTGTGAAAAATTTTTGTTTTAATACCTCGATCTCAAAATCCATCGGGGGCTCTGGAGAAGCAGATATTTCTGGAATCTGAAAGTCTCAACATCATAAAAACATTCTTTTTTTTCCCAAAAATCACACAATTACCTCCATAGGGCTTGCTGGAGCTTCTGAAGACGAACTGAAGCATCCGAAACTCTGAAACTTCMATAAATTAAAATTTTCTGAAATTTGAAAAAAAAATAAATATTTTCCAAAAATTGTTTTTCCAAATTTCCAAAACTCACCTCAAACTTGCAATTGCTCATCTGATGACGTTTTAGGCCAAACTTATGGCTAAATCGAGCATGGCAAACATCACATTCTGGCATTATCTGCCCCGGTTTTTGATGAGCAATCTGAGCAAAAAACATGACCACAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCAGGGACCCATGGACCCAGGGACCCAGGGACCCATGGACCCAGGGACCCAGGGACCACCAGGGAAAAATATTCCGGACCTACCGTATGCCTTTTCAACCTTTTCTGATCGTCGGTTTTGTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCACACAATTACCTCCATA</pcr_primer_p1>
		<pcr_primer_p2>AGATAATGCCAGAATGTGATGT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAAATCACACAATTACCTCCATAGGGCTTGCTGGAGCTTCTGAAGACGAACTGAAGCATCCGAAACTCTGAAACTTCAATAAATTAAAATTTTCTGAAATTTGAAAAAAAAATAAATATTTTCCAAAAATTGTTTTTCCAAATTTCCAAAACTCACCTCAAACTTGCAATTGCTCATCTGATGACGTTTTAGGCCAAACTTATGGCTAAATCGAGCATGGCAAACATCACATTCTGGCATTATCT</canonical_amplicon>
		<polymorphic_amplicon>AAAATCACACAATTACCTCCATAGGGCTTGCTGGAGCTTCTGAAGACGAACTGAAGCATCCGAAACTCTGAAACTTCMATAAATTAAAATTTTCTGAAATTTGAAAAAAAAATAAATATTTTCCAAAAATTGTTTTTCCAAATTTCCAAAACTCACCTCAAACTTGCAATTGCTCATCTGATGACGTTTTAGGCCAAACTTATGGCTAAATCGAGCATGGCAAACATCACATTCTGGCATTATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32997</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>112969</contig_pos>
        <strand></strand>
        <context>TGCACTCGAC[G/A]AATTCAAAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGAAAATACCATCCAAGGTACTTCAAAACTGCAATGTGTGTGCACTCGAC</left_flank>
        <right_flank>AATTCAAAGGGACATTGTGCAAAGGTTGGGCAAGTTTTGGGCAAAAAACT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAATGATCAAACTGTCTGAAACTACTATTTTAGAAATCATCAGAAAATTTCTAGCCCCATATCGACCATACTAGGTAAACTTTCAGTTTCGACCGTTTCGACCGCCGGGTTTGGTCGAAAACCAAACTAGTCCAAATTTGGTCAATATGAGGCTCAAAATGTCACAAATTTGATAGGAAATTCAAATATAACATTTTCCAACTGTTTCGAACGACTTAAATGCCCTAGTCTGGGCAAAAATTTAATTTTGCCACCATTTTCCAGACCAATTCTGAATCCGGATGGGTCGTTCAACTACTCACCAGACGTATACTGTAACGAGTATGAGGAGAAAAATGGAGTTTGTAGTAATGGGGATGAGTGAGTTTTTGAAAATTTGAGGATTTTTTTCTGAAATTGAAATTTTCAGCTGCAAATATCTGCACCGAGTTTCTGGCGACGTAGAGAGAAAATACCATCCAAGGTACTTCAAAACTGCAATGTGTGTGCACTCGACGAATTCAAAGGGACATTGTGCAAAGGTTGGGCAAGTTTTGGGCAAAAAACTTTTTTTTTTGAATTTTTTTCTTTCAAAGAAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCG</canonical>
            <polymorphic>AAAAAATGATCAAACTGTCTGAAACTACTATTTTAGAAATCATCAGAAAATTTCTAGCCCCATATCGACCATACTAGGTAAACTTTCAGTTTCGACCGTTTCGACCGCCGGGTTTGGTCGAAAACCAAACTAGTCCAAATTTGGTCAATATGAGGCTCAAAATGTCACAAATTTGATAGGAAATTCAAATATAACATTTTCCAACTGTTTCGAACGACTTAAATGCCCTAGTCTGGGCAAAAATTTAATTTTGCCACCATTTTCCAGACCAATTCTGAATCCGGATGGGTCGTTCAACTACTCACCAGACGTATACTGTAACGAGTATGAGGAGAAAAATGGAGTTTGTAGTAATGGGGATGAGTGAGTTTTTGAAAATTTGAGGATTTTTTTCTGAAATTGAAATTTTCAGCTGCAAATATCTGCACCGAGTTTCTGGCGACGTAGAGAGAAAATACCATCCAAGGTACTTCAAAACTGCAATGTGTGTGCACTCGACRAATTCAAAGGGACATTGTGCAAAGGTTGGGCAAGTTTTGGGCAAAAAACTTTTTTTTTTGAATTTTTTTCTTTCAAAGAAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>135 114 112 97 89 70 60 60 58 48 44 32 27 21 12 11 10</canonical_bands>
                <polymorphic_bands>157 135 114 112 89 70 60 58 48 44 32 27 21 12 11 10</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>500 375 125</canonical_bands>
                <polymorphic_bands>625 375</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>500 444 56</canonical_bands>
                <polymorphic_bands>556 444</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGTAATGGGGATGAGTGAGTT</pcr_primer_p1>
		<pcr_primer_p2>AATCAATTGCATAACAAGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAGTAATGGGGATGAGTGAGTTTTTGAAAATTTGAGGATTTTTTTCTGAAATTGAAATTTTCAGCTGCAAATATCTGCACCGAGTTTCTGGCGACGTAGAGAGAAAATACCATCCAAGGTACTTCAAAACTGCAATGTGTGTGCACTCGACGAATTCAAAGGGACATTGTGCAAAGGTTGGGCAAGTTTTGGGCAAAAAACTTTTTTTTTTGAATTTTTTTCTTTCAAAGAAATCTTGTTATGCAATTGATT</canonical_amplicon>
		<polymorphic_amplicon>TAGTAATGGGGATGAGTGAGTTTTTGAAAATTTGAGGATTTTTTTCTGAAATTGAAATTTTCAGCTGCAAATATCTGCACCGAGTTTCTGGCGACGTAGAGAGAAAATACCATCCAAGGTACTTCAAAACTGCAATGTGTGTGCACTCGACRAATTCAAAGGGACATTGTGCAAAGGTTGGGCAAGTTTTGGGCAAAAAACTTTTTTTTTTGAATTTTTTTCTTTCAAAGAAATCTTGTTATGCAATTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32998</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>113096</contig_pos>
        <strand></strand>
        <context>cgatttttga[A/G]ttcagcttaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGA</left_flank>
        <right_flank>TTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTAGTCCAAATTTGGTCAATATGAGGCTCAAAATGTCACAAATTTGATAGGAAATTCAAATATAACATTTTCCAACTGTTTCGAACGACTTAAATGCCCTAGTCTGGGCAAAAATTTAATTTTGCCACCATTTTCCAGACCAATTCTGAATCCGGATGGGTCGTTCAACTACTCACCAGACGTATACTGTAACGAGTATGAGGAGAAAAATGGAGTTTGTAGTAATGGGGATGAGTGAGTTTTTGAAAATTTGAGGATTTTTTTCTGAAATTGAAATTTTCAGCTGCAAATATCTGCACCGAGTTTCTGGCGACGTAGAGAGAAAATACCATCCAAGGTACTTCAAAACTGCAATGTGTGTGCACTCGACGAATTCAAAGGGACATTGTGCAAAGGTTGGGCAAGTTTTGGGCAAAAAACTTTTTTTTTTGAATTTTTTTCTTTCAAAGAAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATA</canonical>
            <polymorphic>AACTAGTCCAAATTTGGTCAATATGAGGCTCAAAATGTCACAAATTTGATAGGAAATTCAAATATAACATTTTCCAACTGTTTCGAACGACTTAAATGCCCTAGTCTGGGCAAAAATTTAATTTTGCCACCATTTTCCAGACCAATTCTGAATCCGGATGGGTCGTTCAACTACTCACCAGACGTATACTGTAACGAGTATGAGGAGAAAAATGGAGTTTGTAGTAATGGGGATGAGTGAGTTTTTGAAAATTTGAGGATTTTTTTCTGAAATTGAAATTTTCAGCTGCAAATATCTGCACCGAGTTTCTGGCGACGTAGAGAGAAAATACCATCCAAGGTACTTCAAAACTGCAATGTGTGTGCACTCGACGAATTCAAAGGGACATTGTGCAAAGGTTGGGCAAGTTTTGGGCAAAAAACTTTTTTTTTTGAATTTTTTTCTTTCAAAGAAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGARTTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>135 123 114 112 97 62 60 60 58 44 32 27 21 12 12 11 10 10</canonical_bands>
                <polymorphic_bands>135 123 114 112 97 62 60 60 58 44 32 32 27 12 12 10 10</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>502 373 125</canonical_bands>
                <polymorphic_bands>627 373</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>123 114 106 97 75 60 60 38 37 36 32 32 24 22 21 21 17 12 12 12 11 10 10 7 6 5</canonical_bands>
                <polymorphic_bands>123 114 106 97 75 60 60 38 37 36 32 32 32 24 22 21 17 12 12 12 10 10 7 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTCAAAGAAATCTTGTTATGC</pcr_primer_p1>
		<pcr_primer_p2>AGAGTGAGAGTAGGCACAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>619</pcr_amplicon_size>
		<canonical_amplicon>CTTTCAAAGAAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAA</canonical_amplicon>
		<polymorphic_amplicon>CTTTCAAAGAAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGARTTCAGCTTAAATTTTCCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb32999</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>113140</contig_pos>
        <strand></strand>
        <context>tatcgaccat[T/A]ttwggtmaac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCAT</left_flank>
        <right_flank>TTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAAC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGATAGGAAATTCAAATATAACATTTTCCAACTGTTTCGAACGACTTAAATGCCCTAGTCTGGGCAAAAATTTAATTTTGCCACCATTTTCCAGACCAATTCTGAATCCGGATGGGTCGTTCAACTACTCACCAGACGTATACTGTAACGAGTATGAGGAGAAAAATGGAGTTTGTAGTAATGGGGATGAGTGAGTTTTTGAAAATTTGAGGATTTTTTTCTGAAATTGAAATTTTCAGCTGCAAATATCTGCACCGAGTTTCTGGCGACGTAGAGAGAAAATACCATCCAAGGTACTTCAAAACTGCAATGTGTGTGCACTCGACGAATTCAAAGGGACATTGTGCAAAGGTTGGGCAAGTTTTGGGCAAAAAACTTTTTTTTTTGAATTTTTTTCTTTCAAAGAAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTT</canonical>
            <polymorphic>TTTGATAGGAAATTCAAATATAACATTTTCCAACTGTTTCGAACGACTTAAATGCCCTAGTCTGGGCAAAAATTTAATTTTGCCACCATTTTCCAGACCAATTCTGAATCCGGATGGGTCGTTCAACTACTCACCAGACGTATACTGTAACGAGTATGAGGAGAAAAATGGAGTTTGTAGTAATGGGGATGAGTGAGTTTTTGAAAATTTGAGGATTTTTTTCTGAAATTGAAATTTTCAGCTGCAAATATCTGCACCGAGTTTCTGGCGACGTAGAGAGAAAATACCATCCAAGGTACTTCAAAACTGCAATGTGTGTGCACTCGACGAATTCAAAGGGACATTGTGCAAAGGTTGGGCAAGTTTTGGGCAAAAAACTTTTTTTTTTGAATTTTTTTCTTTCAAAGAAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATWTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCTTGTTATGCAATTGATTT</pcr_primer_p1>
		<pcr_primer_p2>AGTGAGAGTAGGCACAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>608</pcr_amplicon_size>
		<canonical_amplicon>AAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATWTTTGGTCAACTTTCATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33000</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>113143</contig_pos>
        <strand></strand>
        <context>cgaccatwtt[T/A]ggtmaacttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTT</left_flank>
        <right_flank>GGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAGGAAATTCAAATATAACATTTTCCAACTGTTTCGAACGACTTAAATGCCCTAGTCTGGGCAAAAATTTAATTTTGCCACCATTTTCCAGACCAATTCTGAATCCGGATGGGTCGTTCAACTACTCACCAGACGTATACTGTAACGAGTATGAGGAGAAAAATGGAGTTTGTAGTAATGGGGATGAGTGAGTTTTTGAAAATTTGAGGATTTTTTTCTGAAATTGAAATTTTCAGCTGCAAATATCTGCACCGAGTTTCTGGCGACGTAGAGAGAAAATACCATCCAAGGTACTTCAAAACTGCAATGTGTGTGCACTCGACGAATTCAAAGGGACATTGTGCAAAGGTTGGGCAAGTTTTGGGCAAAAAACTTTTTTTTTTGAATTTTTTTCTTTCAAAGAAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTTGTG</canonical>
            <polymorphic>GATAGGAAATTCAAATATAACATTTTCCAACTGTTTCGAACGACTTAAATGCCCTAGTCTGGGCAAAAATTTAATTTTGCCACCATTTTCCAGACCAATTCTGAATCCGGATGGGTCGTTCAACTACTCACCAGACGTATACTGTAACGAGTATGAGGAGAAAAATGGAGTTTGTAGTAATGGGGATGAGTGAGTTTTTGAAAATTTGAGGATTTTTTTCTGAAATTGAAATTTTCAGCTGCAAATATCTGCACCGAGTTTCTGGCGACGTAGAGAGAAAATACCATCCAAGGTACTTCAAAACTGCAATGTGTGTGCACTCGACGAATTCAAAGGGACATTGTGCAAAGGTTGGGCAAGTTTTGGGCAAAAAACTTTTTTTTTTGAATTTTTTTCTTTCAAAGAAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTWGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCTTGTTATGCAATTGATTT</pcr_primer_p1>
		<pcr_primer_p2>AGTGAGAGTAGGCACAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>608</pcr_amplicon_size>
		<canonical_amplicon>AAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGAC</canonical_amplicon>
		<polymorphic_amplicon>AAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTWGGTCAACTTTCATTTTCGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33001</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>113147</contig_pos>
        <strand></strand>
        <context>catwttwggt[C/A]aactttcatt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGT</left_flank>
        <right_flank>AACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAAATTCAAATATAACATTTTCCAACTGTTTCGAACGACTTAAATGCCCTAGTCTGGGCAAAAATTTAATTTTGCCACCATTTTCCAGACCAATTCTGAATCCGGATGGGTCGTTCAACTACTCACCAGACGTATACTGTAACGAGTATGAGGAGAAAAATGGAGTTTGTAGTAATGGGGATGAGTGAGTTTTTGAAAATTTGAGGATTTTTTTCTGAAATTGAAATTTTCAGCTGCAAATATCTGCACCGAGTTTCTGGCGACGTAGAGAGAAAATACCATCCAAGGTACTTCAAAACTGCAATGTGTGTGCACTCGACGAATTCAAAGGGACATTGTGCAAAGGTTGGGCAAGTTTTGGGCAAAAAACTTTTTTTTTTGAATTTTTTTCTTTCAAAGAAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTTGTGCCTA</canonical>
            <polymorphic>GGAAATTCAAATATAACATTTTCCAACTGTTTCGAACGACTTAAATGCCCTAGTCTGGGCAAAAATTTAATTTTGCCACCATTTTCCAGACCAATTCTGAATCCGGATGGGTCGTTCAACTACTCACCAGACGTATACTGTAACGAGTATGAGGAGAAAAATGGAGTTTGTAGTAATGGGGATGAGTGAGTTTTTGAAAATTTGAGGATTTTTTTCTGAAATTGAAATTTTCAGCTGCAAATATCTGCACCGAGTTTCTGGCGACGTAGAGAGAAAATACCATCCAAGGTACTTCAAAACTGCAATGTGTGTGCACTCGACGAATTCAAAGGGACATTGTGCAAAGGTTGGGCAAGTTTTGGGCAAAAAACTTTTTTTTTTGAATTTTTTTCTTTCAAAGAAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTMAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTTGTGCCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCTTGTTATGCAATTGATTT</pcr_primer_p1>
		<pcr_primer_p2>AGTGAGAGTAGGCACAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>608</pcr_amplicon_size>
		<canonical_amplicon>AAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTT</canonical_amplicon>
		<polymorphic_amplicon>AAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTMAACTTTCATTTTCGACCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33002</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>113179</contig_pos>
        <strand></strand>
        <context>cggccgcggt[C/T]gaaamtcmaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGT</left_flank>
        <right_flank>GAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAACGACTTAAATGCCCTAGTCTGGGCAAAAATTTAATTTTGCCACCATTTTCCAGACCAATTCTGAATCCGGATGGGTCGTTCAACTACTCACCAGACGTATACTGTAACGAGTATGAGGAGAAAAATGGAGTTTGTAGTAATGGGGATGAGTGAGTTTTTGAAAATTTGAGGATTTTTTTCTGAAATTGAAATTTTCAGCTGCAAATATCTGCACCGAGTTTCTGGCGACGTAGAGAGAAAATACCATCCAAGGTACTTCAAAACTGCAATGTGTGTGCACTCGACGAATTCAAAGGGACATTGTGCAAAGGTTGGGCAAGTTTTGGGCAAAAAACTTTTTTTTTTGAATTTTTTTCTTTCAAAGAAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTTGTGCCTACTCTCACTCTGAGAGAGACCGCCGACCACCTA</canonical>
            <polymorphic>CGAACGACTTAAATGCCCTAGTCTGGGCAAAAATTTAATTTTGCCACCATTTTCCAGACCAATTCTGAATCCGGATGGGTCGTTCAACTACTCACCAGACGTATACTGTAACGAGTATGAGGAGAAAAATGGAGTTTGTAGTAATGGGGATGAGTGAGTTTTTGAAAATTTGAGGATTTTTTTCTGAAATTGAAATTTTCAGCTGCAAATATCTGCACCGAGTTTCTGGCGACGTAGAGAGAAAATACCATCCAAGGTACTTCAAAACTGCAATGTGTGTGCACTCGACGAATTCAAAGGGACATTGTGCAAAGGTTGGGCAAGTTTTGGGCAAAAAACTTTTTTTTTTGAATTTTTTTCTTTCAAAGAAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTYGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTTGTGCCTACTCTCACTCTGAGAGAGACCGCCGACCACCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>484 278 208 9 9 6 6</canonical_bands>
                <polymorphic_bands>484 284 208 9 9 6</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>286 247 168 152 55 27 27 19 19</canonical_bands>
                <polymorphic_bands>286 266 168 152 55 27 27 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCTTGTTATGCAATTGATTT</pcr_primer_p1>
		<pcr_primer_p2>AGTGAGAGTAGGCACAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>608</pcr_amplicon_size>
		<canonical_amplicon>AAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTTGTGCCTACTCTCACT</canonical_amplicon>
		<polymorphic_amplicon>AAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTYGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTTGTGCCTACTCTCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33003</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>113184</contig_pos>
        <strand></strand>
        <context>gcggtygaaa[A/C]tcmaactagt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAA</left_flank>
        <right_flank>TCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTTAAATGCCCTAGTCTGGGCAAAAATTTAATTTTGCCACCATTTTCCAGACCAATTCTGAATCCGGATGGGTCGTTCAACTACTCACCAGACGTATACTGTAACGAGTATGAGGAGAAAAATGGAGTTTGTAGTAATGGGGATGAGTGAGTTTTTGAAAATTTGAGGATTTTTTTCTGAAATTGAAATTTTCAGCTGCAAATATCTGCACCGAGTTTCTGGCGACGTAGAGAGAAAATACCATCCAAGGTACTTCAAAACTGCAATGTGTGTGCACTCGACGAATTCAAAGGGACATTGTGCAAAGGTTGGGCAAGTTTTGGGCAAAAAACTTTTTTTTTTGAATTTTTTTCTTTCAAAGAAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTTGTGCCTACTCTCACTCTGAGAGAGACCGCCGACCACCTACAGTA</canonical>
            <polymorphic>GACTTAAATGCCCTAGTCTGGGCAAAAATTTAATTTTGCCACCATTTTCCAGACCAATTCTGAATCCGGATGGGTCGTTCAACTACTCACCAGACGTATACTGTAACGAGTATGAGGAGAAAAATGGAGTTTGTAGTAATGGGGATGAGTGAGTTTTTGAAAATTTGAGGATTTTTTTCTGAAATTGAAATTTTCAGCTGCAAATATCTGCACCGAGTTTCTGGCGACGTAGAGAGAAAATACCATCCAAGGTACTTCAAAACTGCAATGTGTGTGCACTCGACGAATTCAAAGGGACATTGTGCAAAGGTTGGGCAAGTTTTGGGCAAAAAACTTTTTTTTTTGAATTTTTTTCTTTCAAAGAAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAMTCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTTGTGCCTACTCTCACTCTGAGAGAGACCGCCGACCACCTACAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCTTGTTATGCAATTGATTT</pcr_primer_p1>
		<pcr_primer_p2>AGTGAGAGTAGGCACAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>608</pcr_amplicon_size>
		<canonical_amplicon>AAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTTGTGCCTACTCTCACT</canonical_amplicon>
		<polymorphic_amplicon>AAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAMTCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTTGTGCCTACTCTCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33004</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>113187</contig_pos>
        <strand></strand>
        <context>gtygaaamtc[C/A]aactagtcca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATC</left_flank>
        <right_flank>AACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAATGCCCTAGTCTGGGCAAAAATTTAATTTTGCCACCATTTTCCAGACCAATTCTGAATCCGGATGGGTCGTTCAACTACTCACCAGACGTATACTGTAACGAGTATGAGGAGAAAAATGGAGTTTGTAGTAATGGGGATGAGTGAGTTTTTGAAAATTTGAGGATTTTTTTCTGAAATTGAAATTTTCAGCTGCAAATATCTGCACCGAGTTTCTGGCGACGTAGAGAGAAAATACCATCCAAGGTACTTCAAAACTGCAATGTGTGTGCACTCGACGAATTCAAAGGGACATTGTGCAAAGGTTGGGCAAGTTTTGGGCAAAAAACTTTTTTTTTTGAATTTTTTTCTTTCAAAGAAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTTGTGCCTACTCTCACTCTGAGAGAGACCGCCGACCACCTACAGTAGGG</canonical>
            <polymorphic>TTAAATGCCCTAGTCTGGGCAAAAATTTAATTTTGCCACCATTTTCCAGACCAATTCTGAATCCGGATGGGTCGTTCAACTACTCACCAGACGTATACTGTAACGAGTATGAGGAGAAAAATGGAGTTTGTAGTAATGGGGATGAGTGAGTTTTTGAAAATTTGAGGATTTTTTTCTGAAATTGAAATTTTCAGCTGCAAATATCTGCACCGAGTTTCTGGCGACGTAGAGAGAAAATACCATCCAAGGTACTTCAAAACTGCAATGTGTGTGCACTCGACGAATTCAAAGGGACATTGTGCAAAGGTTGGGCAAGTTTTGGGCAAAAAACTTTTTTTTTTGAATTTTTTTCTTTCAAAGAAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCMAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTTGTGCCTACTCTCACTCTGAGAGAGACCGCCGACCACCTACAGTAGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCTTGTTATGCAATTGATTT</pcr_primer_p1>
		<pcr_primer_p2>AGTGAGAGTAGGCACAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>608</pcr_amplicon_size>
		<canonical_amplicon>AAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTTGTGCCTACTCTCACT</canonical_amplicon>
		<polymorphic_amplicon>AAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCMAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTTGTGCCTACTCTCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33005</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>113226</contig_pos>
        <strand></strand>
        <context>tgaaaaatgt[T/C]aaaaatttga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGT</left_flank>
        <right_flank>AAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACAT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTTCCAGACCAATTCTGAATCCGGATGGGTCGTTCAACTACTCACCAGACGTATACTGTAACGAGTATGAGGAGAAAAATGGAGTTTGTAGTAATGGGGATGAGTGAGTTTTTGAAAATTTGAGGATTTTTTTCTGAAATTGAAATTTTCAGCTGCAAATATCTGCACCGAGTTTCTGGCGACGTAGAGAGAAAATACCATCCAAGGTACTTCAAAACTGCAATGTGTGTGCACTCGACGAATTCAAAGGGACATTGTGCAAAGGTTGGGCAAGTTTTGGGCAAAAAACTTTTTTTTTTGAATTTTTTTCTTTCAAAGAAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTTGTGCCTACTCTCACTCTGAGAGAGACCGCCGACCACCTACAGTAGGGTATTACGATTCTGGACAAATTACCGAGTGGACCCGGTCC</canonical>
            <polymorphic>CATTTTCCAGACCAATTCTGAATCCGGATGGGTCGTTCAACTACTCACCAGACGTATACTGTAACGAGTATGAGGAGAAAAATGGAGTTTGTAGTAATGGGGATGAGTGAGTTTTTGAAAATTTGAGGATTTTTTTCTGAAATTGAAATTTTCAGCTGCAAATATCTGCACCGAGTTTCTGGCGACGTAGAGAGAAAATACCATCCAAGGTACTTCAAAACTGCAATGTGTGTGCACTCGACGAATTCAAAGGGACATTGTGCAAAGGTTGGGCAAGTTTTGGGCAAAAAACTTTTTTTTTTGAATTTTTTTCTTTCAAAGAAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTYAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTTGTGCCTACTCTCACTCTGAGAGAGACCGCCGACCACCTACAGTAGGGTATTACGATTCTGGACAAATTACCGAGTGGACCCGGTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>377 365 122 93 24 19</canonical_bands>
                <polymorphic_bands>377 365 141 93 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCTTGTTATGCAATTGATTT</pcr_primer_p1>
		<pcr_primer_p2>AGTGAGAGTAGGCACAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>608</pcr_amplicon_size>
		<canonical_amplicon>AAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTTGTGCCTACTCTCACT</canonical_amplicon>
		<polymorphic_amplicon>AAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTYAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTTGTGCCTACTCTCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33006</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>113269</contig_pos>
        <strand></strand>
        <context>ttcagccaat[T/C]aaaacatgat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAAT</left_flank>
        <right_flank>AAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCACCAGACGTATACTGTAACGAGTATGAGGAGAAAAATGGAGTTTGTAGTAATGGGGATGAGTGAGTTTTTGAAAATTTGAGGATTTTTTTCTGAAATTGAAATTTTCAGCTGCAAATATCTGCACCGAGTTTCTGGCGACGTAGAGAGAAAATACCATCCAAGGTACTTCAAAACTGCAATGTGTGTGCACTCGACGAATTCAAAGGGACATTGTGCAAAGGTTGGGCAAGTTTTGGGCAAAAAACTTTTTTTTTTGAATTTTTTTCTTTCAAAGAAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTTGTGCCTACTCTCACTCTGAGAGAGACCGCCGACCACCTACAGTAGGGTATTACGATTCTGGACAAATTACCGAGTGGACCCGGTCCCGAAAAAATAGCAGAGCATCGGTAATCGATGAGGATGAGCAAT</canonical>
            <polymorphic>CTCACCAGACGTATACTGTAACGAGTATGAGGAGAAAAATGGAGTTTGTAGTAATGGGGATGAGTGAGTTTTTGAAAATTTGAGGATTTTTTTCTGAAATTGAAATTTTCAGCTGCAAATATCTGCACCGAGTTTCTGGCGACGTAGAGAGAAAATACCATCCAAGGTACTTCAAAACTGCAATGTGTGTGCACTCGACGAATTCAAAGGGACATTGTGCAAAGGTTGGGCAAGTTTTGGGCAAAAAACTTTTTTTTTTGAATTTTTTTCTTTCAAAGAAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATYAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTTGTGCCTACTCTCACTCTGAGAGAGACCGCCGACCACCTACAGTAGGGTATTACGATTCTGGACAAATTACCGAGTGGACCCGGTCCCGAAAAAATAGCAGAGCATCGGTAATCGATGAGGATGAGCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>408 334 122 93 24 19</canonical_bands>
                <polymorphic_bands>408 334 122 117 19</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>123 114 97 89 76 75 65 60 44 37 36 32 22 21 21 17 12 12 11 10 8 7 6 5</canonical_bands>
                <polymorphic_bands>123 114 97 89 76 75 65 60 58 44 37 32 21 21 17 12 12 11 10 8 7 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCTTGTTATGCAATTGATTT</pcr_primer_p1>
		<pcr_primer_p2>AGTGAGAGTAGGCACAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>608</pcr_amplicon_size>
		<canonical_amplicon>AAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTTGTGCCTACTCTCACT</canonical_amplicon>
		<polymorphic_amplicon>AAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATYAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTTGTGCCTACTCTCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33007</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>113287</contig_pos>
        <strand></strand>
        <context>gatttgggag[A/G]aatttggsca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAG</left_flank>
        <right_flank>AATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACGAGTATGAGGAGAAAAATGGAGTTTGTAGTAATGGGGATGAGTGAGTTTTTGAAAATTTGAGGATTTTTTTCTGAAATTGAAATTTTCAGCTGCAAATATCTGCACCGAGTTTCTGGCGACGTAGAGAGAAAATACCATCCAAGGTACTTCAAAACTGCAATGTGTGTGCACTCGACGAATTCAAAGGGACATTGTGCAAAGGTTGGGCAAGTTTTGGGCAAAAAACTTTTTTTTTTGAATTTTTTTCTTTCAAAGAAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTTGTGCCTACTCTCACTCTGAGAGAGACCGCCGACCACCTACAGTAGGGTATTACGATTCTGGACAAATTACCGAGTGGACCCGGTCCCGAAAAAATAGCAGAGCATCGGTAATCGATGAGGATGAGCAATGGAATGGTAAGGGTTACT</canonical>
            <polymorphic>TAACGAGTATGAGGAGAAAAATGGAGTTTGTAGTAATGGGGATGAGTGAGTTTTTGAAAATTTGAGGATTTTTTTCTGAAATTGAAATTTTCAGCTGCAAATATCTGCACCGAGTTTCTGGCGACGTAGAGAGAAAATACCATCCAAGGTACTTCAAAACTGCAATGTGTGTGCACTCGACGAATTCAAAGGGACATTGTGCAAAGGTTGGGCAAGTTTTGGGCAAAAAACTTTTTTTTTTGAATTTTTTTCTTTCAAAGAAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGRAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTTGTGCCTACTCTCACTCTGAGAGAGACCGCCGACCACCTACAGTAGGGTATTACGATTCTGGACAAATTACCGAGTGGACCCGGTCCCGAAAAAATAGCAGAGCATCGGTAATCGATGAGGATGAGCAATGGAATGGTAAGGGTTACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>172 123 114 112 97 68 60 58 58 44 27 21 13 12 11 10</canonical_bands>
                <polymorphic_bands>172 170 123 114 97 68 60 58 44 27 21 13 12 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCTTGTTATGCAATTGATTT</pcr_primer_p1>
		<pcr_primer_p2>AGTGAGAGTAGGCACAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>608</pcr_amplicon_size>
		<canonical_amplicon>AAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTTGTGCCTACTCTCACT</canonical_amplicon>
		<polymorphic_amplicon>AAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGRAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTTGTGCCTACTCTCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33008</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>113295</contig_pos>
        <strand></strand>
        <context>agraatttgg[C/G]catttacagt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGG</left_flank>
        <right_flank>CATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAGGAGAAAAATGGAGTTTGTAGTAATGGGGATGAGTGAGTTTTTGAAAATTTGAGGATTTTTTTCTGAAATTGAAATTTTCAGCTGCAAATATCTGCACCGAGTTTCTGGCGACGTAGAGAGAAAATACCATCCAAGGTACTTCAAAACTGCAATGTGTGTGCACTCGACGAATTCAAAGGGACATTGTGCAAAGGTTGGGCAAGTTTTGGGCAAAAAACTTTTTTTTTTGAATTTTTTTCTTTCAAAGAAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTTGTGCCTACTCTCACTCTGAGAGAGACCGCCGACCACCTACAGTAGGGTATTACGATTCTGGACAAATTACCGAGTGGACCCGGTCCCGAAAAAATAGCAGAGCATCGGTAATCGATGAGGATGAGCAATGGAATGGTAAGGGTTACTGCAGAACT</canonical>
            <polymorphic>ATGAGGAGAAAAATGGAGTTTGTAGTAATGGGGATGAGTGAGTTTTTGAAAATTTGAGGATTTTTTTCTGAAATTGAAATTTTCAGCTGCAAATATCTGCACCGAGTTTCTGGCGACGTAGAGAGAAAATACCATCCAAGGTACTTCAAAACTGCAATGTGTGTGCACTCGACGAATTCAAAGGGACATTGTGCAAAGGTTGGGCAAGTTTTGGGCAAAAAACTTTTTTTTTTGAATTTTTTTCTTTCAAAGAAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGSCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTTGTGCCTACTCTCACTCTGAGAGAGACCGCCGACCACCTACAGTAGGGTATTACGATTCTGGACAAATTACCGAGTGGACCCGGTCCCGAAAAAATAGCAGAGCATCGGTAATCGATGAGGATGAGCAATGGAATGGTAAGGGTTACTGCAGAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGGCCA</site>
                <isoschizomers>
                    <enzyme>BalI</enzyme>
                    <enzyme>MlsI</enzyme>
                    <enzyme>MluNI</enzyme>
                    <enzyme>MscI</enzyme>
                    <enzyme>Msp20I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>376 170 163 123 116 52</canonical_bands>
                <polymorphic_bands>376 293 163 116 52</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>374 217 170 123 116</canonical_bands>
                <polymorphic_bands>374 293 217 116</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>220 163 123 92 92 86 52 47 47 31 24 23</canonical_bands>
                <polymorphic_bands>220 163 154 92 92 86 52 47 47 24 23</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCTTGTTATGCAATTGATTT</pcr_primer_p1>
		<pcr_primer_p2>AGTGAGAGTAGGCACAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>608</pcr_amplicon_size>
		<canonical_amplicon>AAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGCCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTTGTGCCTACTCTCACT</canonical_amplicon>
		<polymorphic_amplicon>AAATCTTGTTATGCAATTGATTTCAGAATTTGAAAGTGCGATTTTTGAATTCAGCTTAAATTTTCCAAAATTTTGAGCCCCATATCGACCATTTTTGGTCAACTTTCATTTTCGACCGTTTCGGCCGCGGTCGAAAATCCAACTAGTCCAAATATGGTGAATATGGGGTGAAAAATGTTAAAAATTTGATGAAAAGTTAAAAAATAACGCTTTCAGCCAATTAAAACATGATTTGGGAGAAATTTGGSCATTTACAGTTTTTGGCGCCAAAAATCCCAATTTCAAAAAATCTCATTTTTTTCTCAAAAAATGATTAAAATGTTTGAAACTACTATTTTGGAGTTCAACAGAGAATTTCTAACGTTTTGAGCCCCATATCGACCATATTAGGTAAACTTTTATTTTCGACCGTTTCGGCCGCGGTCGAAAATCAAACTAGTCCAAATATAGTGAATATGGGGTGAAAAATGTCAGAAATTCGATGAAAAATTTATAATTCATGCTTTCAGCTAATTCAAACCCGATTTGGGCGGCCAAAAACTCAAAATACATAAAAATTCAATTTTCAAATTTTTTTCAGAATGGCCCATTTTGTGCCTACTCTCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33009</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>117681</contig_pos>
        <strand></strand>
        <context>aaatttagac[T/G]ccagaaggaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GCCAAAAAACTACTTTTTCGAGGTCCACACAAAAATCAAAAAATTTAGAC</left_flank>
        <right_flank>CCAGAAGGAATCGAACTTTTGGCCTTGTGGACCATAAAGTTCGGTGCCAA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAAATTTATAAATGTTACAAAATCAAAAATTTACAGATCGAATCAAAAATTAGGGGTTAGATCAGTTTTTGGGTCAATTTTCACAGATTTTCAGATTTTTCTAGACCATTTTTCTAGAAATTTCCAAAACGAAGAGCATCGAAATTGCCGCCTTGTGGATCGTCGGCACCAAACAAGTTGTAATTTTGAATGCCGATTCTTGGATTTGGATCTTCCGAACTTCCAGCCGTCTCGTTGCTCGGAGCTCGCACCGAGCCAAAGATTCCAGAATCTGGAACTTTTTGGGGGGTTTTTTGGGTTAAAATGAGCAAATTTAGAGGTCCCGAGAGTCAAGGATTAGCGAATTTTGAGGGTTTTGAGGGCTAGGGTACGCCAAAATAGCATTTTTGACAACTACTTTTCTAAAAGCGAAATTTTGAAAAAAAAACACTTTCTAGGCATTTTCATAGCCAAAAAACTACTTTTTCGAGGTCCACACAAAAATCAAAAAATTTAGACTCCAGAAGGAATCGAACTTTTGGCCTTGTGGACCATAAAGTTCGGTGCCAAAGCCCACTGAGCCATCTGACACACTTTTTTGAAAATCGTCATTTTTGACCATTTTGGACCGTTTTTCATAGTTTTACATGTCAAAAAATGGTTCATAACCCCTTTTTGAACATAAAAATAACAAAATAGCGTATTTTCAAAGAAAAATTTTTTTTGAAAAAAATTCCAAAAAATTACAGAAATCTAATATTTGGTCTTTTTAGGCATTTTCAGGACCTAAAAACTATATTTCTGTGGTCCACACAAAAGTCAAAAAATTTAGATCCCAGAAGGAATCGAACTTTTGGCCTTGTGGATCGTAAAATTTTGGTGCCAAAGCCCACTGAGCCGTTTGGCACACTTTTTTGAAAATCGTCATTTTTGACCGTTTCGGACCGTTTTTGATAGTTTTACATGTCAAAAAATGATTCATAACCCCTTTTTGAACATAAAATTACGAAAAAAACCGTA</canonical>
            <polymorphic>ACAAATTTATAAATGTTACAAAATCAAAAATTTACAGATCGAATCAAAAATTAGGGGTTAGATCAGTTTTTGGGTCAATTTTCACAGATTTTCAGATTTTTCTAGACCATTTTTCTAGAAATTTCCAAAACGAAGAGCATCGAAATTGCCGCCTTGTGGATCGTCGGCACCAAACAAGTTGTAATTTTGAATGCCGATTCTTGGATTTGGATCTTCCGAACTTCCAGCCGTCTCGTTGCTCGGAGCTCGCACCGAGCCAAAGATTCCAGAATCTGGAACTTTTTGGGGGGTTTTTTGGGTTAAAATGAGCAAATTTAGAGGTCCCGAGAGTCAAGGATTAGCGAATTTTGAGGGTTTTGAGGGCTAGGGTACGCCAAAATAGCATTTTTGACAACTACTTTTCTAAAAGCGAAATTTTGAAAAAAAAACACTTTCTAGGCATTTTCATAGCCAAAAAACTACTTTTTCGAGGTCCACACAAAAATCAAAAAATTTAGACKCCAGAAGGAATCGAACTTTTGGCCTTGTGGACCATAAAGTTCGGTGCCAAAGCCCACTGAGCCATCTGACACACTTTTTTGAAAATCGTCATTTTTGACCATTTTGGACCGTTTTTCATAGTTTTACATGTCAAAAAATGGTTCATAACCCCTTTTTGAACATAAAAATAACAAAATAGCGTATTTTCAAAGAAAAATTTTTTTTGAAAAAAATTCCAAAAAATTACAGAAATCTAATATTTGGTCTTTTTAGGCATTTTCAGGACCTAAAAACTATATTTCTGTGGTCCACACAAAAGTCAAAAAATTTAGATCCCAGAAGGAATCGAACTTTTGGCCTTGTGGATCGTAAAATTTTGGTGCCAAAGCCCACTGAGCCGTTTGGCACACTTTTTTGAAAATCGTCATTTTTGACCGTTTCGGACCGTTTTTGATAGTTTTACATGTCAAAAAATGATTCATAACCCCTTTTTGAACATAAAATTACGAAAAAAACCGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>315 169 155 133 66 59 44 41 11 7</canonical_bands>
                <polymorphic_bands>315 180 155 133 66 59 44 41 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>260 239 178 151 102 50 13 7</canonical_bands>
                <polymorphic_bands>438 239 151 102 50 13 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACTACTTTTCTAAAAGCGAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAACGACATTTTGGACAC</pcr_primer_p2>
		<pcr_amplicon_size>927</pcr_amplicon_size>
		<canonical_amplicon>CAACTACTTTTCTAAAAGCGAAATTTTGAAAAAAAAACACTTTCTAGGCATTTTCATAGCCAAAAAACTACTTTTTCGAGGTCCACACAAAAATCAAAAAATTTAGACTCCAGAAGGAATCGAACTTT</canonical_amplicon>
		<polymorphic_amplicon>CAACTACTTTTCTAAAAGCGAAATTTTGAAAAAAAAACACTTTCTAGGCATTTTCATAGCCAAAAAACTACTTTTTCGAGGTCCACACAAAAATCAAAAAATTTAGACKCCAGAAGGAATCGAACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33010</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>117839</contig_pos>
        <strand></strand>
        <context>accccttttt[G/A]aacataaaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACCGTTTTTCATAGTTTTACATGTCAAAAAATGGTTCATAACCCCTTTTT</left_flank>
        <right_flank>AACATAAAAATAACAAAATAGCGTATTTTCAAAGAAAAATTTTTTTTGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCGTCGGCACCAAACAAGTTGTAATTTTGAATGCCGATTCTTGGATTTGGATCTTCCGAACTTCCAGCCGTCTCGTTGCTCGGAGCTCGCACCGAGCCAAAGATTCCAGAATCTGGAACTTTTTGGGGGGTTTTTTGGGTTAAAATGAGCAAATTTAGAGGTCCCGAGAGTCAAGGATTAGCGAATTTTGAGGGTTTTGAGGGCTAGGGTACGCCAAAATAGCATTTTTGACAACTACTTTTCTAAAAGCGAAATTTTGAAAAAAAAACACTTTCTAGGCATTTTCATAGCCAAAAAACTACTTTTTCGAGGTCCACACAAAAATCAAAAAATTTAGACTCCAGAAGGAATCGAACTTTTGGCCTTGTGGACCATAAAGTTCGGTGCCAAAGCCCACTGAGCCATCTGACACACTTTTTTGAAAATCGTCATTTTTGACCATTTTGGACCGTTTTTCATAGTTTTACATGTCAAAAAATGGTTCATAACCCCTTTTTGAACATAAAAATAACAAAATAGCGTATTTTCAAAGAAAAATTTTTTTTGAAAAAAATTCCAAAAAATTACAGAAATCTAATATTTGGTCTTTTTAGGCATTTTCAGGACCTAAAAACTATATTTCTGTGGTCCACACAAAAGTCAAAAAATTTAGATCCCAGAAGGAATCGAACTTTTGGCCTTGTGGATCGTAAAATTTTGGTGCCAAAGCCCACTGAGCCGTTTGGCACACTTTTTTGAAAATCGTCATTTTTGACCGTTTCGGACCGTTTTTGATAGTTTTACATGTCAAAAAATGATTCATAACCCCTTTTTGAACATAAAATTACGAAAAAAACCGTATTTTCAAAAAAAAAAACTTTTTGAAAAAAATTTCCAAAAAATTACAAAATCTCATTTTTGTCATTTCTAGGCATTTTCATGGTCTAAAAACTAACTTTCCAAGGTCCACACGAAAATCAAAAAGTTTTGACCCTAGAAGGAATTGAACTTCGGCCTTG</canonical>
            <polymorphic>GATCGTCGGCACCAAACAAGTTGTAATTTTGAATGCCGATTCTTGGATTTGGATCTTCCGAACTTCCAGCCGTCTCGTTGCTCGGAGCTCGCACCGAGCCAAAGATTCCAGAATCTGGAACTTTTTGGGGGGTTTTTTGGGTTAAAATGAGCAAATTTAGAGGTCCCGAGAGTCAAGGATTAGCGAATTTTGAGGGTTTTGAGGGCTAGGGTACGCCAAAATAGCATTTTTGACAACTACTTTTCTAAAAGCGAAATTTTGAAAAAAAAACACTTTCTAGGCATTTTCATAGCCAAAAAACTACTTTTTCGAGGTCCACACAAAAATCAAAAAATTTAGACTCCAGAAGGAATCGAACTTTTGGCCTTGTGGACCATAAAGTTCGGTGCCAAAGCCCACTGAGCCATCTGACACACTTTTTTGAAAATCGTCATTTTTGACCATTTTGGACCGTTTTTCATAGTTTTACATGTCAAAAAATGGTTCATAACCCCTTTTTRAACATAAAAATAACAAAATAGCGTATTTTCAAAGAAAAATTTTTTTTGAAAAAAATTCCAAAAAATTACAGAAATCTAATATTTGGTCTTTTTAGGCATTTTCAGGACCTAAAAACTATATTTCTGTGGTCCACACAAAAGTCAAAAAATTTAGATCCCAGAAGGAATCGAACTTTTGGCCTTGTGGATCGTAAAATTTTGGTGCCAAAGCCCACTGAGCCGTTTGGCACACTTTTTTGAAAATCGTCATTTTTGACCGTTTCGGACCGTTTTTGATAGTTTTACATGTCAAAAAATGATTCATAACCCCTTTTTGAACATAAAATTACGAAAAAAACCGTATTTTCAAAAAAAAAAACTTTTTGAAAAAAATTTCCAAAAAATTACAAAATCTCATTTTTGTCATTTCTAGGCATTTTCATGGTCTAAAAACTAACTTTCCAAGGTCCACACGAAAATCAAAAAGTTTTGACCCTAGAAGGAATTGAACTTCGGCCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACTACTTTTCTAAAAGCGAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAACGACATTTTGGACAC</pcr_primer_p2>
		<pcr_amplicon_size>927</pcr_amplicon_size>
		<canonical_amplicon>CAACTACTTTTCTAAAAGCGAAATTTTGAAAAAAAAACACTTTCTAGGCATTTTCATAGCCAAAAAACTACTTTTTCGAGGTCCACACAAAAATCAAAAAATTTAGACTCCAGAAGGAATCGAACTTTTGGCCTTGTGGACCATAAAGTTCGGTGCCAAAGCCCACTGAGCCATCTGACACACTTTTTTGAAAATCGTCATTTTTGACCATTTTGGACCGTTTTTCATAGTTTTACATGTCAAAAAATGGTTCATAACCCCTTTTTGAACATAAAAATAACAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CAACTACTTTTCTAAAAGCGAAATTTTGAAAAAAAAACACTTTCTAGGCATTTTCATAGCCAAAAAACTACTTTTTCGAGGTCCACACAAAAATCAAAAAATTTAGACTCCAGAAGGAATCGAACTTTTGGCCTTGTGGACCATAAAGTTCGGTGCCAAAGCCCACTGAGCCATCTGACACACTTTTTTGAAAATCGTCATTTTTGACCATTTTGGACCGTTTTTCATAGTTTTACATGTCAAAAAATGGTTCATAACCCCTTTTTRAACATAAAAATAACAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33011</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>118070</contig_pos>
        <strand></strand>
        <context>cgtttggcac[A/T]cttttttgaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTGTGGATCGTAAAATTTTGGTGCCAAAGCCCACTGAGCCGTTTGGCAC</left_flank>
        <right_flank>CTTTTTTGAAAATCGTCATTTTTGACCGTTTCGGACCGTTTTTGATAGTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACAACTACTTTTCTAAAAGCGAAATTTTGAAAAAAAAACACTTTCTAGGCATTTTCATAGCCAAAAAACTACTTTTTCGAGGTCCACACAAAAATCAAAAAATTTAGACTCCAGAAGGAATCGAACTTTTGGCCTTGTGGACCATAAAGTTCGGTGCCAAAGCCCACTGAGCCATCTGACACACTTTTTTGAAAATCGTCATTTTTGACCATTTTGGACCGTTTTTCATAGTTTTACATGTCAAAAAATGGTTCATAACCCCTTTTTGAACATAAAAATAACAAAATAGCGTATTTTCAAAGAAAAATTTTTTTTGAAAAAAATTCCAAAAAATTACAGAAATCTAATATTTGGTCTTTTTAGGCATTTTCAGGACCTAAAAACTATATTTCTGTGGTCCACACAAAAGTCAAAAAATTTAGATCCCAGAAGGAATCGAACTTTTGGCCTTGTGGATCGTAAAATTTTGGTGCCAAAGCCCACTGAGCCGTTTGGCACACTTTTTTGAAAATCGTCATTTTTGACCGTTTCGGACCGTTTTTGATAGTTTTACATGTCAAAAAATGATTCATAACCCCTTTTTGAACATAAAATTACGAAAAAAACCGTATTTTCAAAAAAAAAAACTTTTTGAAAAAAATTTCCAAAAAATTACAAAATCTCATTTTTGTCATTTCTAGGCATTTTCATGGTCTAAAAACTAACTTTCCAAGGTCCACACGAAAATCAAAAAGTTTTGACCCTAGAAGGAATTGAACTTCGGCCTTGTGGACCATACAATTTCGGTGCCAAAACCCACTGAGCCATCTAGTTCACTTTTTTGAAAATCATCATTTTTTAGCGGAAATGGCTGTTTTTGTCATTTTTTAATGGTTCTCAGTGATTTTTGAAGTTTTTAAGGGCTTTTCGTGTCCAAAATGTCGTTTTTCATGTCTGAAAGTGTCTAAAATCAACTTGAAAGCAAGAAGTTCAAGTCGAAAAATGGTCAAAAATCATCTA</canonical>
            <polymorphic>GACAACTACTTTTCTAAAAGCGAAATTTTGAAAAAAAAACACTTTCTAGGCATTTTCATAGCCAAAAAACTACTTTTTCGAGGTCCACACAAAAATCAAAAAATTTAGACTCCAGAAGGAATCGAACTTTTGGCCTTGTGGACCATAAAGTTCGGTGCCAAAGCCCACTGAGCCATCTGACACACTTTTTTGAAAATCGTCATTTTTGACCATTTTGGACCGTTTTTCATAGTTTTACATGTCAAAAAATGGTTCATAACCCCTTTTTGAACATAAAAATAACAAAATAGCGTATTTTCAAAGAAAAATTTTTTTTGAAAAAAATTCCAAAAAATTACAGAAATCTAATATTTGGTCTTTTTAGGCATTTTCAGGACCTAAAAACTATATTTCTGTGGTCCACACAAAAGTCAAAAAATTTAGATCCCAGAAGGAATCGAACTTTTGGCCTTGTGGATCGTAAAATTTTGGTGCCAAAGCCCACTGAGCCGTTTGGCACWCTTTTTTGAAAATCGTCATTTTTGACCGTTTCGGACCGTTTTTGATAGTTTTACATGTCAAAAAATGATTCATAACCCCTTTTTGAACATAAAATTACGAAAAAAACCGTATTTTCAAAAAAAAAAACTTTTTGAAAAAAATTTCCAAAAAATTACAAAATCTCATTTTTGTCATTTCTAGGCATTTTCATGGTCTAAAAACTAACTTTCCAAGGTCCACACGAAAATCAAAAAGTTTTGACCCTAGAAGGAATTGAACTTCGGCCTTGTGGACCATACAATTTCGGTGCCAAAACCCACTGAGCCATCTAGTTCACTTTTTTGAAAATCATCATTTTTTAGCGGAAATGGCTGTTTTTGTCATTTTTTAATGGTTCTCAGTGATTTTTGAAGTTTTTAAGGGCTTTTCGTGTCCAAAATGTCGTTTTTCATGTCTGAAAGTGTCTAAAATCAACTTGAAAGCAAGAAGTTCAAGTCGAAAAATGGTCAAAAATCATCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>219 213 67 57 51 51 50 46 41 31 29 18 18 17 17 15 15 10 10 10 5 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>221 213 67 57 51 51 50 46 41 31 29 18 18 17 17 15 15 10 10 10 5 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACTACTTTTCTAAAAGCGAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAACGACATTTTGGACAC</pcr_primer_p2>
		<pcr_amplicon_size>927</pcr_amplicon_size>
		<canonical_amplicon>CAACTACTTTTCTAAAAGCGAAATTTTGAAAAAAAAACACTTTCTAGGCATTTTCATAGCCAAAAAACTACTTTTTCGAGGTCCACACAAAAATCAAAAAATTTAGACTCCAGAAGGAATCGAACTTTTGGCCTTGTGGACCATAAAGTTCGGTGCCAAAGCCCACTGAGCCATCTGACACACTTTTTTGAAAATCGTCATTTTTGACCATTTTGGACCGTTTTTCATAGTTTTACATGTCAAAAAATGGTTCATAACCCCTTTTTGAACATAAAAATAACAAAATAGCGTATTTTCAAAGAAAAATTTTTTTTGAAAAAAATTCCAAAAAATTACAGAAATCTAATATTTGGTCTTTTTAGGCATTTTCAGGACCTAAAAACTATATTTCTGTGGTCCACACAAAAGTCAAAAAATTTAGATCCCAGAAGGAATCGAACTTTTGGCCTTGTGGATCGTAAAATTTTGGTGCCAAAGCCCACTGAGCCGTTTGGCACACTTTTTTGAAAATCGTCATTTTTGACCGTTTCGGACCGTTTTTGATAGTTTTACATGTCAAAAAATGATTCATAACCCCTTTTTGAACATAAAATTACGAAAAAAACCGTATTTTCAAAAAAAAAAACTTTTTGAAAAAAATTTCCAAAAAATTACAAAATCTCATTTTTGTCATTTCTAGGCATTTTCATGGTCTAAAAACTAACTTTCCAAGGTCCACACGAAAATCAAAAAGTTTTGACCCTAGAAGGAATTGAACTTCGGCCTTGTGGACCATACAATTTCGGTGCCAAAACCCACTGAGCCATCTAGTTCACTTTTTTGAAAATCATCATTTTTTAGCGGAAATGGCTGTTTTTGTCATTTTTTAATGGTTCTCAGTGATTTTTGAAGTTTTTAAGGGCTTTTCGTGTCCAAAATGTCGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CAACTACTTTTCTAAAAGCGAAATTTTGAAAAAAAAACACTTTCTAGGCATTTTCATAGCCAAAAAACTACTTTTTCGAGGTCCACACAAAAATCAAAAAATTTAGACTCCAGAAGGAATCGAACTTTTGGCCTTGTGGACCATAAAGTTCGGTGCCAAAGCCCACTGAGCCATCTGACACACTTTTTTGAAAATCGTCATTTTTGACCATTTTGGACCGTTTTTCATAGTTTTACATGTCAAAAAATGGTTCATAACCCCTTTTTGAACATAAAAATAACAAAATAGCGTATTTTCAAAGAAAAATTTTTTTTGAAAAAAATTCCAAAAAATTACAGAAATCTAATATTTGGTCTTTTTAGGCATTTTCAGGACCTAAAAACTATATTTCTGTGGTCCACACAAAAGTCAAAAAATTTAGATCCCAGAAGGAATCGAACTTTTGGCCTTGTGGATCGTAAAATTTTGGTGCCAAAGCCCACTGAGCCGTTTGGCACWCTTTTTTGAAAATCGTCATTTTTGACCGTTTCGGACCGTTTTTGATAGTTTTACATGTCAAAAAATGATTCATAACCCCTTTTTGAACATAAAATTACGAAAAAAACCGTATTTTCAAAAAAAAAAACTTTTTGAAAAAAATTTCCAAAAAATTACAAAATCTCATTTTTGTCATTTCTAGGCATTTTCATGGTCTAAAAACTAACTTTCCAAGGTCCACACGAAAATCAAAAAGTTTTGACCCTAGAAGGAATTGAACTTCGGCCTTGTGGACCATACAATTTCGGTGCCAAAACCCACTGAGCCATCTAGTTCACTTTTTTGAAAATCATCATTTTTTAGCGGAAATGGCTGTTTTTGTCATTTTTTAATGGTTCTCAGTGATTTTTGAAGTTTTTAAGGGCTTTTCGTGTCCAAAATGTCGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33012</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>124146</contig_pos>
        <strand></strand>
        <context>gcttgaaata[G/A]gctaaaaatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAATTTGTTTAATGTTGGCTCGAAATAAGGTCAAAATTGGCTTGAAATA</left_flank>
        <right_flank>GCTAAAAATTAGCTTAAAATGGTCAAAAAAATCTCATTGAATTGTCTTAA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCCGCAAAAAAACTCAAAAAAAAATTCAAAATCCAAAATTTCGTGGGGTAGATCAAACAAATTTTCAAAAAAAAAAGATCAAAAAAATTTTTTTCGAAGTATGATTTTCCCAAATTTGAGGTCATTTGGACTACTGTAGTTTGAAAAAACAGAAAATTGGCTTGAAATTGGTTAAAAATGAGCCTGATTTGGTCTAAAATTGGCCTGAAATTGGATTAAAATTGGCCTAAAATCGGCTCAAGTTAGCCTAAAATTAGCTAAAAATTAGTTTAAAATATGCTAAAGATATGGCTCAAAAATAGGCTTAAAATAGGTCAAAAAATAGGCTGAAAATAAGCTAGAAATAGGCTCAAGAAATGGTCTTAAATTGGTCTGGATTAGTTTTAAATGACTCAAAAATGATCCTAAAATGAATTGAAATGACTCAATTAGGCTTAAAATTGGCTGAAAATTTGTTTAATGTTGGCTCGAAATAAGGTCAAAATTGGCTTGAAATAGGCTAAAAATTAGCTTAAAATGGTCAAAAAAATCTCATTGAATTGTCTTAAAATTAGCTAAAAAACTGTCTGAAAATAACCTGAAAACGGTCCAAAATGCCTTTAAACGGCTCAAAAAATCGTTGTCGTCTGCCTGTGTGTCTGTTTGTCCAAAAAAACTTTTTTTCCCATGTTTTGAACCATTTTTCTAATTTTCTCCGAATTTTCTGAATTATTTGAAGATTACTGTACTTCAAAATGACTTAAAACGCATTTTCAGAATAAAATTAGCTTAAAATGACGTAAAATTGACCAAAAATGGCAAAAAATAGGCCCAAGAAATCAGAAAATTCCAGCAACACAAAAATCAGGTGACTGTGTATGCGCTATACAAAAATTTCATCATCTACGCGCTTAAGAAAAAAAAATAGTGTAGAGAGAGTGAGAGACGCAGAGAAAGCGGGAAGAACGAGGGTCCCAAAGCGACCGACTAGGCGAAGTGAGAGAGTATAGGAATTGAGA</canonical>
            <polymorphic>TTTCCGCAAAAAAACTCAAAAAAAAATTCAAAATCCAAAATTTCGTGGGGTAGATCAAACAAATTTTCAAAAAAAAAAGATCAAAAAAATTTTTTTCGAAGTATGATTTTCCCAAATTTGAGGTCATTTGGACTACTGTAGTTTGAAAAAACAGAAAATTGGCTTGAAATTGGTTAAAAATGAGCCTGATTTGGTCTAAAATTGGCCTGAAATTGGATTAAAATTGGCCTAAAATCGGCTCAAGTTAGCCTAAAATTAGCTAAAAATTAGTTTAAAATATGCTAAAGATATGGCTCAAAAATAGGCTTAAAATAGGTCAAAAAATAGGCTGAAAATAAGCTAGAAATAGGCTCAAGAAATGGTCTTAAATTGGTCTGGATTAGTTTTAAATGACTCAAAAATGATCCTAAAATGAATTGAAATGACTCAATTAGGCTTAAAATTGGCTGAAAATTTGTTTAATGTTGGCTCGAAATAAGGTCAAAATTGGCTTGAAATARGCTAAAAATTAGCTTAAAATGGTCAAAAAAATCTCATTGAATTGTCTTAAAATTAGCTAAAAAACTGTCTGAAAATAACCTGAAAACGGTCCAAAATGCCTTTAAACGGCTCAAAAAATCGTTGTCGTCTGCCTGTGTGTCTGTTTGTCCAAAAAAACTTTTTTTCCCATGTTTTGAACCATTTTTCTAATTTTCTCCGAATTTTCTGAATTATTTGAAGATTACTGTACTTCAAAATGACTTAAAACGCATTTTCAGAATAAAATTAGCTTAAAATGACGTAAAATTGACCAAAAATGGCAAAAAATAGGCCCAAGAAATCAGAAAATTCCAGCAACACAAAAATCAGGTGACTGTGTATGCGCTATACAAAAATTTCATCATCTACGCGCTTAAGAAAAAAAAATAGTGTAGAGAGAGTGAGAGACGCAGAGAAAGCGGGAAGAACGAGGGTCCCAAAGCGACCGACTAGGCGAAGTGAGAGAGTATAGGAATTGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>189 162 160 85 53 44 42 34 23 22 22 22 22 21 12 11 11 11 11 11 11 11 10</canonical_bands>
                <polymorphic_bands>189 162 160 85 53 44 42 34 23 22 22 22 22 22 21 12 11 11 11 11 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAGGTCATTTGGACTACTG</pcr_primer_p1>
		<pcr_primer_p2>AAAATTAGAAAAATGGTTCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>577</pcr_amplicon_size>
		<canonical_amplicon>TTGAGGTCATTTGGACTACTGTAGTTTGAAAAAACAGAAAATTGGCTTGAAATTGGTTAAAAATGAGCCTGATTTGGTCTAAAATTGGCCTGAAATTGGATTAAAATTGGCCTAAAATCGGCTCAAGTTAGCCTAAAATTAGCTAAAAATTAGTTTAAAATATGCTAAAGATATGGCTCAAAAATAGGCTTAAAATAGGTCAAAAAATAGGCTGAAAATAAGCTAGAAATAGGCTCAAGAAATGGTCTTAAATTGGTCTGGATTAGTTTTAAATGACTCAAAAATGATCCTAAAATGAATTGAAATGACTCAATTAGGCTTAAAATTGGCTGAAAATTTGTTTAATGTTGGCTCGAAATAAGGTCAAAATTGGCTTGAAATAGGCTAAAAATTAGCTTAAAATGGTCAAAAAAATCTCATTGAATTGTCTTAAAATTAGCTAAAAAACTGTCTGAAAATAACCTGAAAACGGTCCAAAATGCCTTTAAACGGCTCAAAAAATCGTTGTCGTCTGCCTGTGTGTCTGTTTGTCCAAAAAAACTTTTTTTCCCATGTTTTGAACCATTTTTCTAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGAGGTCATTTGGACTACTGTAGTTTGAAAAAACAGAAAATTGGCTTGAAATTGGTTAAAAATGAGCCTGATTTGGTCTAAAATTGGCCTGAAATTGGATTAAAATTGGCCTAAAATCGGCTCAAGTTAGCCTAAAATTAGCTAAAAATTAGTTTAAAATATGCTAAAGATATGGCTCAAAAATAGGCTTAAAATAGGTCAAAAAATAGGCTGAAAATAAGCTAGAAATAGGCTCAAGAAATGGTCTTAAATTGGTCTGGATTAGTTTTAAATGACTCAAAAATGATCCTAAAATGAATTGAAATGACTCAATTAGGCTTAAAATTGGCTGAAAATTTGTTTAATGTTGGCTCGAAATAAGGTCAAAATTGGCTTGAAATARGCTAAAAATTAGCTTAAAATGGTCAAAAAAATCTCATTGAATTGTCTTAAAATTAGCTAAAAAACTGTCTGAAAATAACCTGAAAACGGTCCAAAATGCCTTTAAACGGCTCAAAAAATCGTTGTCGTCTGCCTGTGTGTCTGTTTGTCCAAAAAAACTTTTTTTCCCATGTTTTGAACCATTTTTCTAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33013</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>124185</contig_pos>
        <strand></strand>
        <context>aaatctcatt[G/A]aattgtctta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGCTTGAAATAGGCTAAAAATTAGCTTAAAATGGTCAAAAAAATCTCATT</left_flank>
        <right_flank>AATTGTCTTAAAATTAGCTAAAAAACTGTCTGAAAATAACCTGAAAACGG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCGTGGGGTAGATCAAACAAATTTTCAAAAAAAAAAGATCAAAAAAATTTTTTTCGAAGTATGATTTTCCCAAATTTGAGGTCATTTGGACTACTGTAGTTTGAAAAAACAGAAAATTGGCTTGAAATTGGTTAAAAATGAGCCTGATTTGGTCTAAAATTGGCCTGAAATTGGATTAAAATTGGCCTAAAATCGGCTCAAGTTAGCCTAAAATTAGCTAAAAATTAGTTTAAAATATGCTAAAGATATGGCTCAAAAATAGGCTTAAAATAGGTCAAAAAATAGGCTGAAAATAAGCTAGAAATAGGCTCAAGAAATGGTCTTAAATTGGTCTGGATTAGTTTTAAATGACTCAAAAATGATCCTAAAATGAATTGAAATGACTCAATTAGGCTTAAAATTGGCTGAAAATTTGTTTAATGTTGGCTCGAAATAAGGTCAAAATTGGCTTGAAATAGGCTAAAAATTAGCTTAAAATGGTCAAAAAAATCTCATTGAATTGTCTTAAAATTAGCTAAAAAACTGTCTGAAAATAACCTGAAAACGGTCCAAAATGCCTTTAAACGGCTCAAAAAATCGTTGTCGTCTGCCTGTGTGTCTGTTTGTCCAAAAAAACTTTTTTTCCCATGTTTTGAACCATTTTTCTAATTTTCTCCGAATTTTCTGAATTATTTGAAGATTACTGTACTTCAAAATGACTTAAAACGCATTTTCAGAATAAAATTAGCTTAAAATGACGTAAAATTGACCAAAAATGGCAAAAAATAGGCCCAAGAAATCAGAAAATTCCAGCAACACAAAAATCAGGTGACTGTGTATGCGCTATACAAAAATTTCATCATCTACGCGCTTAAGAAAAAAAAATAGTGTAGAGAGAGTGAGAGACGCAGAGAAAGCGGGAAGAACGAGGGTCCCAAAGCGACCGACTAGGCGAAGTGAGAGAGTATAGGAATTGAGAGACGCAGAGAAAAAAGCCAGCAGATGGTCTTAGTCAGAT</canonical>
            <polymorphic>ATTTCGTGGGGTAGATCAAACAAATTTTCAAAAAAAAAAGATCAAAAAAATTTTTTTCGAAGTATGATTTTCCCAAATTTGAGGTCATTTGGACTACTGTAGTTTGAAAAAACAGAAAATTGGCTTGAAATTGGTTAAAAATGAGCCTGATTTGGTCTAAAATTGGCCTGAAATTGGATTAAAATTGGCCTAAAATCGGCTCAAGTTAGCCTAAAATTAGCTAAAAATTAGTTTAAAATATGCTAAAGATATGGCTCAAAAATAGGCTTAAAATAGGTCAAAAAATAGGCTGAAAATAAGCTAGAAATAGGCTCAAGAAATGGTCTTAAATTGGTCTGGATTAGTTTTAAATGACTCAAAAATGATCCTAAAATGAATTGAAATGACTCAATTAGGCTTAAAATTGGCTGAAAATTTGTTTAATGTTGGCTCGAAATAAGGTCAAAATTGGCTTGAAATAGGCTAAAAATTAGCTTAAAATGGTCAAAAAAATCTCATTRAATTGTCTTAAAATTAGCTAAAAAACTGTCTGAAAATAACCTGAAAACGGTCCAAAATGCCTTTAAACGGCTCAAAAAATCGTTGTCGTCTGCCTGTGTGTCTGTTTGTCCAAAAAAACTTTTTTTCCCATGTTTTGAACCATTTTTCTAATTTTCTCCGAATTTTCTGAATTATTTGAAGATTACTGTACTTCAAAATGACTTAAAACGCATTTTCAGAATAAAATTAGCTTAAAATGACGTAAAATTGACCAAAAATGGCAAAAAATAGGCCCAAGAAATCAGAAAATTCCAGCAACACAAAAATCAGGTGACTGTGTATGCGCTATACAAAAATTTCATCATCTACGCGCTTAAGAAAAAAAAATAGTGTAGAGAGAGTGAGAGACGCAGAGAAAGCGGGAAGAACGAGGGTCCCAAAGCGACCGACTAGGCGAAGTGAGAGAGTATAGGAATTGAGAGACGCAGAGAAAAAAGCCAGCAGATGGTCTTAGTCAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGGTCATTTGGACTACTG</pcr_primer_p1>
		<pcr_primer_p2>AAAATTAGAAAAATGGTTCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>577</pcr_amplicon_size>
		<canonical_amplicon>TTGAGGTCATTTGGACTACTGTAGTTTGAAAAAACAGAAAATTGGCTTGAAATTGGTTAAAAATGAGCCTGATTTGGTCTAAAATTGGCCTGAAATTGGATTAAAATTGGCCTAAAATCGGCTCAAGTTAGCCTAAAATTAGCTAAAAATTAGTTTAAAATATGCTAAAGATATGGCTCAAAAATAGGCTTAAAATAGGTCAAAAAATAGGCTGAAAATAAGCTAGAAATAGGCTCAAGAAATGGTCTTAAATTGGTCTGGATTAGTTTTAAATGACTCAAAAATGATCCTAAAATGAATTGAAATGACTCAATTAGGCTTAAAATTGGCTGAAAATTTGTTTAATGTTGGCTCGAAATAAGGTCAAAATTGGCTTGAAATAGGCTAAAAATTAGCTTAAAATGGTCAAAAAAATCTCATTGAATTGTCTTAAAATTAGCTAAAAAACTGTCTGAAAATAACCTGAAAACGGTCCAAAATGCCTTTAAACGGCTCAAAAAATCGTTGTCGTCTGCCTGTGTGTCTGTTTGTCCAAAAAAACTTTTTTTCCCATGTTTTGAACCATTTTTCTAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGAGGTCATTTGGACTACTGTAGTTTGAAAAAACAGAAAATTGGCTTGAAATTGGTTAAAAATGAGCCTGATTTGGTCTAAAATTGGCCTGAAATTGGATTAAAATTGGCCTAAAATCGGCTCAAGTTAGCCTAAAATTAGCTAAAAATTAGTTTAAAATATGCTAAAGATATGGCTCAAAAATAGGCTTAAAATAGGTCAAAAAATAGGCTGAAAATAAGCTAGAAATAGGCTCAAGAAATGGTCTTAAATTGGTCTGGATTAGTTTTAAATGACTCAAAAATGATCCTAAAATGAATTGAAATGACTCAATTAGGCTTAAAATTGGCTGAAAATTTGTTTAATGTTGGCTCGAAATAAGGTCAAAATTGGCTTGAAATAGGCTAAAAATTAGCTTAAAATGGTCAAAAAAATCTCATTRAATTGTCTTAAAATTAGCTAAAAAACTGTCTGAAAATAACCTGAAAACGGTCCAAAATGCCTTTAAACGGCTCAAAAAATCGTTGTCGTCTGCCTGTGTGTCTGTTTGTCCAAAAAAACTTTTTTTCCCATGTTTTGAACCATTTTTCTAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33014</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>124268</contig_pos>
        <strand>+</strand>
        <context>caaaaAATCG[G/T]TGTCKTCTGY</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAATAACCTGAAAACGGTCCAAAATGCCTTTAAACGGCTCAAAAAATCG</left_flank>
        <right_flank>TGTCGTCTGCCTGTGTGTCTGTTTGTCCAAAAAAACTTTTTTTCCCATGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCATTTGGACTACTGTAGTTTGAAAAAACAGAAAATTGGCTTGAAATTGGTTAAAAATGAGCCTGATTTGGTCTAAAATTGGCCTGAAATTGGATTAAAATTGGCCTAAAATCGGCTCAAGTTAGCCTAAAATTAGCTAAAAATTAGTTTAAAATATGCTAAAGATATGGCTCAAAAATAGGCTTAAAATAGGTCAAAAAATAGGCTGAAAATAAGCTAGAAATAGGCTCAAGAAATGGTCTTAAATTGGTCTGGATTAGTTTTAAATGACTCAAAAATGATCCTAAAATGAATTGAAATGACTCAATTAGGCTTAAAATTGGCTGAAAATTTGTTTAATGTTGGCTCGAAATAAGGTCAAAATTGGCTTGAAATAGGCTAAAAATTAGCTTAAAATGGTCAAAAAAATCTCATTGAATTGTCTTAAAATTAGCTAAAAAACTGTCTGAAAATAACCTGAAAACGGTCCAAAATGCCTTTAAACGGCTCAAAAAATCGTTGTCGTCTGCCTGTGTGTCTGTTTGTCCAAAAAAACTTTTTTTCCCATGTTTTGAACCATTTTTCTAATTTTCTCCGAATTTTCTGAATTATTTGAAGATTACTGTACTTCAAAATGACTTAAAACGCATTTTCAGAATAAAATTAGCTTAAAATGACGTAAAATTGACCAAAAATGGCAAAAAATAGGCCCAAGAAATCAGAAAATTCCAGCAACACAAAAATCAGGTGACTGTGTATGCGCTATACAAAAATTTCATCATCTACGCGCTTAAGAAAAAAAAATAGTGTAGAGAGAGTGAGAGACGCAGAGAAAGCGGGAAGAACGAGGGTCCCAAAGCGACCGACTAGGCGAAGTGAGAGAGTATAGGAATTGAGAGACGCAGAGAAAAAAGCCAGCAGATGGTCTTAGTCAGATGGATTTGAGAGATAATATAGATTTTTTTGCCATTTNNNNNNNNNNNGCCTAACTTTTGCCAGTTTGGTTATTTAGGCCACCAC</canonical>
            <polymorphic>GTCATTTGGACTACTGTAGTTTGAAAAAACAGAAAATTGGCTTGAAATTGGTTAAAAATGAGCCTGATTTGGTCTAAAATTGGCCTGAAATTGGATTAAAATTGGCCTAAAATCGGCTCAAGTTAGCCTAAAATTAGCTAAAAATTAGTTTAAAATATGCTAAAGATATGGCTCAAAAATAGGCTTAAAATAGGTCAAAAAATAGGCTGAAAATAAGCTAGAAATAGGCTCAAGAAATGGTCTTAAATTGGTCTGGATTAGTTTTAAATGACTCAAAAATGATCCTAAAATGAATTGAAATGACTCAATTAGGCTTAAAATTGGCTGAAAATTTGTTTAATGTTGGCTCGAAATAAGGTCAAAATTGGCTTGAAATAGGCTAAAAATTAGCTTAAAATGGTCAAAAAAATCTCATTGAATTGTCTTAAAATTAGCTAAAAAACTGTCTGAAAATAACCTGAAAACGGTCCAAAATGCCTTTAAACGGCTCAAAAAATCGKTGTCGTCTGCCTGTGTGTCTGTTTGTCCAAAAAAACTTTTTTTCCCATGTTTTGAACCATTTTTCTAATTTTCTCCGAATTTTCTGAATTATTTGAAGATTACTGTACTTCAAAATGACTTAAAACGCATTTTCAGAATAAAATTAGCTTAAAATGACGTAAAATTGACCAAAAATGGCAAAAAATAGGCCCAAGAAATCAGAAAATTCCAGCAACACAAAAATCAGGTGACTGTGTATGCGCTATACAAAAATTTCATCATCTACGCGCTTAAGAAAAAAAAATAGTGTAGAGAGAGTGAGAGACGCAGAGAAAGCGGGAAGAACGAGGGTCCCAAAGCGACCGACTAGGCGAAGTGAGAGAGTATAGGAATTGAGAGACGCAGAGAAAAAAGCCAGCAGATGGTCTTAGTCAGATGGATTTGAGAGATAATATAGATTTTTTTGCCATTTNNNNNNNNNNNGCCTAACTTTTGCCAGTTTGGTTATTTAGGCCACCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGGTCATTTGGACTACTG</pcr_primer_p1>
		<pcr_primer_p2>AAAATTAGAAAAATGGTTCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>577</pcr_amplicon_size>
		<canonical_amplicon>GTTGTCGTCTGCCTGTGTGTCTGTTTGTCCAAAAAAACTTTTTTTCCCATGTTTTGAACCATTTTTCTAATTTT</canonical_amplicon>
		<polymorphic_amplicon>GKTGTCGTCTGCCTGTGTGTCTGTTTGTCCAAAAAAACTTTTTTTCCCATGTTTTGAACCATTTTTCTAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33015</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>124273</contig_pos>
        <strand>+</strand>
        <context>AATCGKTGTC[G/T]TCTGYCTGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACCTGAAAACGGTCCAAAATGCCTTTAAACGGCTCAAAAAATCGTTGTC</left_flank>
        <right_flank>TCTGCCTGTGTGTCTGTTTGTCCAAAAAAACTTTTTTTCCCATGTTTTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGACTACTGTAGTTTGAAAAAACAGAAAATTGGCTTGAAATTGGTTAAAAATGAGCCTGATTTGGTCTAAAATTGGCCTGAAATTGGATTAAAATTGGCCTAAAATCGGCTCAAGTTAGCCTAAAATTAGCTAAAAATTAGTTTAAAATATGCTAAAGATATGGCTCAAAAATAGGCTTAAAATAGGTCAAAAAATAGGCTGAAAATAAGCTAGAAATAGGCTCAAGAAATGGTCTTAAATTGGTCTGGATTAGTTTTAAATGACTCAAAAATGATCCTAAAATGAATTGAAATGACTCAATTAGGCTTAAAATTGGCTGAAAATTTGTTTAATGTTGGCTCGAAATAAGGTCAAAATTGGCTTGAAATAGGCTAAAAATTAGCTTAAAATGGTCAAAAAAATCTCATTGAATTGTCTTAAAATTAGCTAAAAAACTGTCTGAAAATAACCTGAAAACGGTCCAAAATGCCTTTAAACGGCTCAAAAAATCGTTGTCGTCTGCCTGTGTGTCTGTTTGTCCAAAAAAACTTTTTTTCCCATGTTTTGAACCATTTTTCTAATTTTCTCCGAATTTTCTGAATTATTTGAAGATTACTGTACTTCAAAATGACTTAAAACGCATTTTCAGAATAAAATTAGCTTAAAATGACGTAAAATTGACCAAAAATGGCAAAAAATAGGCCCAAGAAATCAGAAAATTCCAGCAACACAAAAATCAGGTGACTGTGTATGCGCTATACAAAAATTTCATCATCTACGCGCTTAAGAAAAAAAAATAGTGTAGAGAGAGTGAGAGACGCAGAGAAAGCGGGAAGAACGAGGGTCCCAAAGCGACCGACTAGGCGAAGTGAGAGAGTATAGGAATTGAGAGACGCAGAGAAAAAAGCCAGCAGATGGTCTTAGTCAGATGGATTTGAGAGATAATATAGATTTTTTTGCCATTTNNNNNNNNNNNGCCTAACTTTTGCCAGTTTGGTTATTTAGGCCACCACTTCAA</canonical>
            <polymorphic>TTGGACTACTGTAGTTTGAAAAAACAGAAAATTGGCTTGAAATTGGTTAAAAATGAGCCTGATTTGGTCTAAAATTGGCCTGAAATTGGATTAAAATTGGCCTAAAATCGGCTCAAGTTAGCCTAAAATTAGCTAAAAATTAGTTTAAAATATGCTAAAGATATGGCTCAAAAATAGGCTTAAAATAGGTCAAAAAATAGGCTGAAAATAAGCTAGAAATAGGCTCAAGAAATGGTCTTAAATTGGTCTGGATTAGTTTTAAATGACTCAAAAATGATCCTAAAATGAATTGAAATGACTCAATTAGGCTTAAAATTGGCTGAAAATTTGTTTAATGTTGGCTCGAAATAAGGTCAAAATTGGCTTGAAATAGGCTAAAAATTAGCTTAAAATGGTCAAAAAAATCTCATTGAATTGTCTTAAAATTAGCTAAAAAACTGTCTGAAAATAACCTGAAAACGGTCCAAAATGCCTTTAAACGGCTCAAAAAATCGTTGTCKTCTGCCTGTGTGTCTGTTTGTCCAAAAAAACTTTTTTTCCCATGTTTTGAACCATTTTTCTAATTTTCTCCGAATTTTCTGAATTATTTGAAGATTACTGTACTTCAAAATGACTTAAAACGCATTTTCAGAATAAAATTAGCTTAAAATGACGTAAAATTGACCAAAAATGGCAAAAAATAGGCCCAAGAAATCAGAAAATTCCAGCAACACAAAAATCAGGTGACTGTGTATGCGCTATACAAAAATTTCATCATCTACGCGCTTAAGAAAAAAAAATAGTGTAGAGAGAGTGAGAGACGCAGAGAAAGCGGGAAGAACGAGGGTCCCAAAGCGACCGACTAGGCGAAGTGAGAGAGTATAGGAATTGAGAGACGCAGAGAAAAAAGCCAGCAGATGGTCTTAGTCAGATGGATTTGAGAGATAATATAGATTTTTTTGCCATTTNNNNNNNNNNNGCCTAACTTTTGCCAGTTTGGTTATTTAGGCCACCACTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGGTCATTTGGACTACTG</pcr_primer_p1>
		<pcr_primer_p2>AAAATTAGAAAAATGGTTCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>577</pcr_amplicon_size>
		<canonical_amplicon>CGTCTGCCTGTGTGTCTGTTTGTCCAAAAAAACTTTTTTTCCCATGTTTTGAACCATTTTTCTAATTTT</canonical_amplicon>
		<polymorphic_amplicon>CKTCTGCCTGTGTGTCTGTTTGTCCAAAAAAACTTTTTTTCCCATGTTTTGAACCATTTTTCTAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33016</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>124278</contig_pos>
        <strand>+</strand>
        <context>KTGTCKTCTG[C/T]CTGTGTGTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAACGGTCCAAAATGCCTTTAAACGGCTCAAAAAATCGTTGTCGTCTG</left_flank>
        <right_flank>CTGTGTGTCTGTTTGTCCAAAAAAACTTTTTTTCCCATGTTTTGAACCAT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACTGTAGTTTGAAAAAACAGAAAATTGGCTTGAAATTGGTTAAAAATGAGCCTGATTTGGTCTAAAATTGGCCTGAAATTGGATTAAAATTGGCCTAAAATCGGCTCAAGTTAGCCTAAAATTAGCTAAAAATTAGTTTAAAATATGCTAAAGATATGGCTCAAAAATAGGCTTAAAATAGGTCAAAAAATAGGCTGAAAATAAGCTAGAAATAGGCTCAAGAAATGGTCTTAAATTGGTCTGGATTAGTTTTAAATGACTCAAAAATGATCCTAAAATGAATTGAAATGACTCAATTAGGCTTAAAATTGGCTGAAAATTTGTTTAATGTTGGCTCGAAATAAGGTCAAAATTGGCTTGAAATAGGCTAAAAATTAGCTTAAAATGGTCAAAAAAATCTCATTGAATTGTCTTAAAATTAGCTAAAAAACTGTCTGAAAATAACCTGAAAACGGTCCAAAATGCCTTTAAACGGCTCAAAAAATCGTTGTCGTCTGCCTGTGTGTCTGTTTGTCCAAAAAAACTTTTTTTCCCATGTTTTGAACCATTTTTCTAATTTTCTCCGAATTTTCTGAATTATTTGAAGATTACTGTACTTCAAAATGACTTAAAACGCATTTTCAGAATAAAATTAGCTTAAAATGACGTAAAATTGACCAAAAATGGCAAAAAATAGGCCCAAGAAATCAGAAAATTCCAGCAACACAAAAATCAGGTGACTGTGTATGCGCTATACAAAAATTTCATCATCTACGCGCTTAAGAAAAAAAAATAGTGTAGAGAGAGTGAGAGACGCAGAGAAAGCGGGAAGAACGAGGGTCCCAAAGCGACCGACTAGGCGAAGTGAGAGAGTATAGGAATTGAGAGACGCAGAGAAAAAAGCCAGCAGATGGTCTTAGTCAGATGGATTTGAGAGATAATATAGATTTTTTTGCCATTTNNNNNNNNNNNGCCTAACTTTTGCCAGTTTGGTTATTTAGGCCACCACTTCAATATGG</canonical>
            <polymorphic>CTACTGTAGTTTGAAAAAACAGAAAATTGGCTTGAAATTGGTTAAAAATGAGCCTGATTTGGTCTAAAATTGGCCTGAAATTGGATTAAAATTGGCCTAAAATCGGCTCAAGTTAGCCTAAAATTAGCTAAAAATTAGTTTAAAATATGCTAAAGATATGGCTCAAAAATAGGCTTAAAATAGGTCAAAAAATAGGCTGAAAATAAGCTAGAAATAGGCTCAAGAAATGGTCTTAAATTGGTCTGGATTAGTTTTAAATGACTCAAAAATGATCCTAAAATGAATTGAAATGACTCAATTAGGCTTAAAATTGGCTGAAAATTTGTTTAATGTTGGCTCGAAATAAGGTCAAAATTGGCTTGAAATAGGCTAAAAATTAGCTTAAAATGGTCAAAAAAATCTCATTGAATTGTCTTAAAATTAGCTAAAAAACTGTCTGAAAATAACCTGAAAACGGTCCAAAATGCCTTTAAACGGCTCAAAAAATCGTTGTCGTCTGYCTGTGTGTCTGTTTGTCCAAAAAAACTTTTTTTCCCATGTTTTGAACCATTTTTCTAATTTTCTCCGAATTTTCTGAATTATTTGAAGATTACTGTACTTCAAAATGACTTAAAACGCATTTTCAGAATAAAATTAGCTTAAAATGACGTAAAATTGACCAAAAATGGCAAAAAATAGGCCCAAGAAATCAGAAAATTCCAGCAACACAAAAATCAGGTGACTGTGTATGCGCTATACAAAAATTTCATCATCTACGCGCTTAAGAAAAAAAAATAGTGTAGAGAGAGTGAGAGACGCAGAGAAAGCGGGAAGAACGAGGGTCCCAAAGCGACCGACTAGGCGAAGTGAGAGAGTATAGGAATTGAGAGACGCAGAGAAAAAAGCCAGCAGATGGTCTTAGTCAGATGGATTTGAGAGATAATATAGATTTTTTTGCCATTTNNNNNNNNNNNGCCTAACTTTTGCCAGTTTGGTTATTTAGGCCACCACTTCAATATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGGTCATTTGGACTACTG</pcr_primer_p1>
		<pcr_primer_p2>AAAATTAGAAAAATGGTTCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>577</pcr_amplicon_size>
		<canonical_amplicon>GCCTGTGTGTCTGTTTGTCCAAAAAAACTTTTTTTCCCATGTTTTGAACCATTTTTCTAATTTT</canonical_amplicon>
		<polymorphic_amplicon>GYCTGTGTGTCTGTTTGTCCAAAAAAACTTTTTTTCCCATGTTTTGAACCATTTTTCTAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33017</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>124297</contig_pos>
        <strand>+</strand>
        <context>CTGTTTGTCC[C/T]AAAAAACTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTAAACGGCTCAAAAAATCGTTGTCGTCTGCCTGTGTGTCTGTTTGTCC</left_flank>
        <right_flank>AAAAAACTTTTTTTCCCATGTTTTGAACCATTTTTCTAATTTTCTCCGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAAAATTGGCTTGAAATTGGTTAAAAATGAGCCTGATTTGGTCTAAAATTGGCCTGAAATTGGATTAAAATTGGCCTAAAATCGGCTCAAGTTAGCCTAAAATTAGCTAAAAATTAGTTTAAAATATGCTAAAGATATGGCTCAAAAATAGGCTTAAAATAGGTCAAAAAATAGGCTGAAAATAAGCTAGAAATAGGCTCAAGAAATGGTCTTAAATTGGTCTGGATTAGTTTTAAATGACTCAAAAATGATCCTAAAATGAATTGAAATGACTCAATTAGGCTTAAAATTGGCTGAAAATTTGTTTAATGTTGGCTCGAAATAAGGTCAAAATTGGCTTGAAATAGGCTAAAAATTAGCTTAAAATGGTCAAAAAAATCTCATTGAATTGTCTTAAAATTAGCTAAAAAACTGTCTGAAAATAACCTGAAAACGGTCCAAAATGCCTTTAAACGGCTCAAAAAATCGTTGTCGTCTGCCTGTGTGTCTGTTTGTCCAAAAAAACTTTTTTTCCCATGTTTTGAACCATTTTTCTAATTTTCTCCGAATTTTCTGAATTATTTGAAGATTACTGTACTTCAAAATGACTTAAAACGCATTTTCAGAATAAAATTAGCTTAAAATGACGTAAAATTGACCAAAAATGGCAAAAAATAGGCCCAAGAAATCAGAAAATTCCAGCAACACAAAAATCAGGTGACTGTGTATGCGCTATACAAAAATTTCATCATCTACGCGCTTAAGAAAAAAAAATAGTGTAGAGAGAGTGAGAGACGCAGAGAAAGCGGGAAGAACGAGGGTCCCAAAGCGACCGACTAGGCGAAGTGAGAGAGTATAGGAATTGAGAGACGCAGAGAAAAAAGCCAGCAGATGGTCTTAGTCAGATGGATTTGAGAGATAATATAGATTTTTTTGCCATTTNNNNNNNNNNNGCCTAACTTTTGCCAGTTTGGTTATTTAGGCCACCACTTCAATATGGCCTAAAATGCCCTAACATG</canonical>
            <polymorphic>CAGAAAATTGGCTTGAAATTGGTTAAAAATGAGCCTGATTTGGTCTAAAATTGGCCTGAAATTGGATTAAAATTGGCCTAAAATCGGCTCAAGTTAGCCTAAAATTAGCTAAAAATTAGTTTAAAATATGCTAAAGATATGGCTCAAAAATAGGCTTAAAATAGGTCAAAAAATAGGCTGAAAATAAGCTAGAAATAGGCTCAAGAAATGGTCTTAAATTGGTCTGGATTAGTTTTAAATGACTCAAAAATGATCCTAAAATGAATTGAAATGACTCAATTAGGCTTAAAATTGGCTGAAAATTTGTTTAATGTTGGCTCGAAATAAGGTCAAAATTGGCTTGAAATAGGCTAAAAATTAGCTTAAAATGGTCAAAAAAATCTCATTGAATTGTCTTAAAATTAGCTAAAAAACTGTCTGAAAATAACCTGAAAACGGTCCAAAATGCCTTTAAACGGCTCAAAAAATCGTTGTCGTCTGCCTGTGTGTCTGTTTGTCCYAAAAAACTTTTTTTCCCATGTTTTGAACCATTTTTCTAATTTTCTCCGAATTTTCTGAATTATTTGAAGATTACTGTACTTCAAAATGACTTAAAACGCATTTTCAGAATAAAATTAGCTTAAAATGACGTAAAATTGACCAAAAATGGCAAAAAATAGGCCCAAGAAATCAGAAAATTCCAGCAACACAAAAATCAGGTGACTGTGTATGCGCTATACAAAAATTTCATCATCTACGCGCTTAAGAAAAAAAAATAGTGTAGAGAGAGTGAGAGACGCAGAGAAAGCGGGAAGAACGAGGGTCCCAAAGCGACCGACTAGGCGAAGTGAGAGAGTATAGGAATTGAGAGACGCAGAGAAAAAAGCCAGCAGATGGTCTTAGTCAGATGGATTTGAGAGATAATATAGATTTTTTTGCCATTTNNNNNNNNNNNGCCTAACTTTTGCCAGTTTGGTTATTTAGGCCACCACTTCAATATGGCCTAAAATGCCCTAACATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGGTCATTTGGACTACTGT</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCGGAGAAAATTAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>588</pcr_amplicon_size>
		<canonical_amplicon>CAAAAAAACTTTTTTTCCCATGTTTTGAACCATTTTTCTAATTTTCTCCGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>CYAAAAAACTTTTTTTCCCATGTTTTGAACCATTTTTCTAATTTTCTCCGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33018</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>124429</contig_pos>
        <strand></strand>
        <context>aaaatgacgt[A/G]aaattgacca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAAATGACTTAAAACGCATTTTCAGAATAAAATTAGCTTAAAATGACGT</left_flank>
        <right_flank>AAATTGACCAAAAATGGCAAAAAATAGGCCCAAGAAATCAGAAAATTCCA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGATATGGCTCAAAAATAGGCTTAAAATAGGTCAAAAAATAGGCTGAAAATAAGCTAGAAATAGGCTCAAGAAATGGTCTTAAATTGGTCTGGATTAGTTTTAAATGACTCAAAAATGATCCTAAAATGAATTGAAATGACTCAATTAGGCTTAAAATTGGCTGAAAATTTGTTTAATGTTGGCTCGAAATAAGGTCAAAATTGGCTTGAAATAGGCTAAAAATTAGCTTAAAATGGTCAAAAAAATCTCATTGAATTGTCTTAAAATTAGCTAAAAAACTGTCTGAAAATAACCTGAAAACGGTCCAAAATGCCTTTAAACGGCTCAAAAAATCGTTGTCGTCTGCCTGTGTGTCTGTTTGTCCAAAAAAACTTTTTTTCCCATGTTTTGAACCATTTTTCTAATTTTCTCCGAATTTTCTGAATTATTTGAAGATTACTGTACTTCAAAATGACTTAAAACGCATTTTCAGAATAAAATTAGCTTAAAATGACGTAAAATTGACCAAAAATGGCAAAAAATAGGCCCAAGAAATCAGAAAATTCCAGCAACACAAAAATCAGGTGACTGTGTATGCGCTATACAAAAATTTCATCATCTACGCGCTTAAGAAAAAAAAATAGTGTAGAGAGAGTGAGAGACGCAGAGAAAGCGGGAAGAACGAGGGTCCCAAAGCGACCGACTAGGCGAAGTGAGAGAGTATAGGAATTGAGAGACGCAGAGAAAAAAGCCAGCAGATGGTCTTAGTCAGATGGATTTGAGAGATAATATAGATTTTTTTGCCATTTNNNNNNNNNNNGCCTAACTTTTGCCAGTTTGGTTATTTAGGCCACCACTTCAATATGGCCTAAAATGCCCTAACATGACCCTGGTGTGTTTTCTAGGTCATTTTGAAGTGGTGGCCTAAATAACCAAACTTTCAAAAGTTAGGCCACTGAAGAAAACCTGAAAAAAAGAAAAAAAAATTCATTTTTAATATTAAAAAAAAAACAACAAC</canonical>
            <polymorphic>AAAGATATGGCTCAAAAATAGGCTTAAAATAGGTCAAAAAATAGGCTGAAAATAAGCTAGAAATAGGCTCAAGAAATGGTCTTAAATTGGTCTGGATTAGTTTTAAATGACTCAAAAATGATCCTAAAATGAATTGAAATGACTCAATTAGGCTTAAAATTGGCTGAAAATTTGTTTAATGTTGGCTCGAAATAAGGTCAAAATTGGCTTGAAATAGGCTAAAAATTAGCTTAAAATGGTCAAAAAAATCTCATTGAATTGTCTTAAAATTAGCTAAAAAACTGTCTGAAAATAACCTGAAAACGGTCCAAAATGCCTTTAAACGGCTCAAAAAATCGTTGTCGTCTGCCTGTGTGTCTGTTTGTCCAAAAAAACTTTTTTTCCCATGTTTTGAACCATTTTTCTAATTTTCTCCGAATTTTCTGAATTATTTGAAGATTACTGTACTTCAAAATGACTTAAAACGCATTTTCAGAATAAAATTAGCTTAAAATGACGTRAAATTGACCAAAAATGGCAAAAAATAGGCCCAAGAAATCAGAAAATTCCAGCAACACAAAAATCAGGTGACTGTGTATGCGCTATACAAAAATTTCATCATCTACGCGCTTAAGAAAAAAAAATAGTGTAGAGAGAGTGAGAGACGCAGAGAAAGCGGGAAGAACGAGGGTCCCAAAGCGACCGACTAGGCGAAGTGAGAGAGTATAGGAATTGAGAGACGCAGAGAAAAAAGCCAGCAGATGGTCTTAGTCAGATGGATTTGAGAGATAATATAGATTTTTTTGCCATTTNNNNNNNNNNNGCCTAACTTTTGCCAGTTTGGTTATTTAGGCCACCACTTCAATATGGCCTAAAATGCCCTAACATGACCCTGGTGTGTTTTCTAGGTCATTTTGAAGTGGTGGCCTAAATAACCAAACTTTCAAAAGTTAGGCCACTGAAGAAAACCTGAAAAAAAGAAAAAAAAATTCATTTTTAATATTAAAAAAAAAACAACAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTAATTTTCTCCGAATTT</pcr_primer_p1>
		<pcr_primer_p2>CGTCTCTCACTCTCTCTACACTATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTAATTTTCTCCGAATTTTCTGAATTATTTGAAGATTACTGTACTTCAAAATGACTTAAAACGCATTTTCAGAATAAAATTAGCTTAAAATGACGTAAAATTGACCAAAAATGGCAAAAAATAGGCCCAAGAAATCAGAAAATTCCAGCAACACAAAAATCAGGTGACTGTGTATGCGCTATACAAAAATTTCATCATCTACGCGCTTAAGAAAAAAAAATAGTGTAGAGAGAGTGAGAGACG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTAATTTTCTCCGAATTTTCTGAATTATTTGAAGATTACTGTACTTCAAAATGACTTAAAACGCATTTTCAGAATAAAATTAGCTTAAAATGACGTRAAATTGACCAAAAATGGCAAAAAATAGGCCCAAGAAATCAGAAAATTCCAGCAACACAAAAATCAGGTGACTGTGTATGCGCTATACAAAAATTTCATCATCTACGCGCTTAAGAAAAAAAAATAGTGTAGAGAGAGTGAGAGACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33019</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>124544</contig_pos>
        <strand>+</strand>
        <context>CGCGCTTAAG[A/G]AAAAAAAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGTGACTGTGTATGCGCTATACAAAAATTTCATCATCTACGCGCTTAAG</left_flank>
        <right_flank>AAAAAAAATAGTGTAGAGAGAGTGAGAGACGCAGAGAAAGCGGGAAGAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGATCCTAAAATGAATTGAAATGACTCAATTAGGCTTAAAATTGGCTGAAAATTTGTTTAATGTTGGCTCGAAATAAGGTCAAAATTGGCTTGAAATAGGCTAAAAATTAGCTTAAAATGGTCAAAAAAATCTCATTGAATTGTCTTAAAATTAGCTAAAAAACTGTCTGAAAATAACCTGAAAACGGTCCAAAATGCCTTTAAACGGCTCAAAAAATCGTTGTCGTCTGCCTGTGTGTCTGTTTGTCCAAAAAAACTTTTTTTCCCATGTTTTGAACCATTTTTCTAATTTTCTCCGAATTTTCTGAATTATTTGAAGATTACTGTACTTCAAAATGACTTAAAACGCATTTTCAGAATAAAATTAGCTTAAAATGACGTAAAATTGACCAAAAATGGCAAAAAATAGGCCCAAGAAATCAGAAAATTCCAGCAACACAAAAATCAGGTGACTGTGTATGCGCTATACAAAAATTTCATCATCTACGCGCTTAAGAAAAAAAAATAGTGTAGAGAGAGTGAGAGACGCAGAGAAAGCGGGAAGAACGAGGGTCCCAAAGCGACCGACTAGGCGAAGTGAGAGAGTATAGGAATTGAGAGACGCAGAGAAAAAAGCCAGCAGATGGTCTTAGTCAGATGGATTTGAGAGATAATATAGATTTTTTTGCCATTTNNNNNNNNNNNGCCTAACTTTTGCCAGTTTGGTTATTTAGGCCACCACTTCAATATGGCCTAAAATGCCCTAACATGACCCTGGTGTGTTTTCTAGGTCATTTTGAAGTGGTGGCCTAAATAACCAAACTTTCAAAAGTTAGGCCACTGAAGAAAACCTGAAAAAAAGAAAAAAAAATTCATTTTTAATATTAAAAAAAAAACAACAACAACCCGATTCCTATGAGAAAAAAAGCTACATAAAAAGTTTGGATTACTGTACTACTGATTTCAAGCCATATACTCATAAATATCCCTATCATCCTTATTCCTTCTGATATATTCC</canonical>
            <polymorphic>AAATGATCCTAAAATGAATTGAAATGACTCAATTAGGCTTAAAATTGGCTGAAAATTTGTTTAATGTTGGCTCGAAATAAGGTCAAAATTGGCTTGAAATAGGCTAAAAATTAGCTTAAAATGGTCAAAAAAATCTCATTGAATTGTCTTAAAATTAGCTAAAAAACTGTCTGAAAATAACCTGAAAACGGTCCAAAATGCCTTTAAACGGCTCAAAAAATCGTTGTCGTCTGCCTGTGTGTCTGTTTGTCCAAAAAAACTTTTTTTCCCATGTTTTGAACCATTTTTCTAATTTTCTCCGAATTTTCTGAATTATTTGAAGATTACTGTACTTCAAAATGACTTAAAACGCATTTTCAGAATAAAATTAGCTTAAAATGACGTAAAATTGACCAAAAATGGCAAAAAATAGGCCCAAGAAATCAGAAAATTCCAGCAACACAAAAATCAGGTGACTGTGTATGCGCTATACAAAAATTTCATCATCTACGCGCTTAAGRAAAAAAAATAGTGTAGAGAGAGTGAGAGACGCAGAGAAAGCGGGAAGAACGAGGGTCCCAAAGCGACCGACTAGGCGAAGTGAGAGAGTATAGGAATTGAGAGACGCAGAGAAAAAAGCCAGCAGATGGTCTTAGTCAGATGGATTTGAGAGATAATATAGATTTTTTTGCCATTTNNNNNNNNNNNGCCTAACTTTTGCCAGTTTGGTTATTTAGGCCACCACTTCAATATGGCCTAAAATGCCCTAACATGACCCTGGTGTGTTTTCTAGGTCATTTTGAAGTGGTGGCCTAAATAACCAAACTTTCAAAAGTTAGGCCACTGAAGAAAACCTGAAAAAAAGAAAAAAAAATTCATTTTTAATATTAAAAAAAAAACAACAACAACCCGATTCCTATGAGAAAAAAAGCTACATAAAAAGTTTGGATTACTGTACTACTGATTTCAAGCCATATACTCATAAATATCCCTATCATCCTTATTCCTTCTGATATATTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAGAAAATTCCAGCAACA</pcr_primer_p1>
		<pcr_primer_p2>TTATCTCTCAAATCCATCTGACT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>ATCAGAAAATTCCAGCAACACAAAAATCAGGTGACTGTGTATGCGCTATACAAAAATTTCATCATCTACGCGCTTAAGAAAAAAAAATAGTGTAGAGAGAGTGAGAGACGCAGAGAAAGCGGGAAGAACGAGGGTCCCAAAGCGACCGACTAGGCGAAGTGAGAGAGTATAGGAATTGAGAGACGCAGAGAAAAAAGCCAGCAGATGGTCTTAGTCAGATGGATTTGAGAGATAA</canonical_amplicon>
		<polymorphic_amplicon>ATCAGAAAATTCCAGCAACACAAAAATCAGGTGACTGTGTATGCGCTATACAAAAATTTCATCATCTACGCGCTTAAGRAAAAAAAATAGTGTAGAGAGAGTGAGAGACGCAGAGAAAGCGGGAAGAACGAGGGTCCCAAAGCGACCGACTAGGCGAAGTGAGAGAGTATAGGAATTGAGAGACGCAGAGAAAAAAGCCAGCAGATGGTCTTAGTCAGATGGATTTGAGAGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33020</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>137425</contig_pos>
        <strand></strand>
        <context>gtcaattttg[C/A]gycattttta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATATTTTAAGTCAATTTATGCTTATTTTAAGCTATTTTAAGTCAATTTTG</left_flank>
        <right_flank>GTCATTTTTAGGTTATTTTGGGCTATTTTAAGTGAATTTTGGGCTATTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCCAATAACCAAACCGTTCGATTTGTCCTTTCTCTCTAACACTCTCCTCTTTTCCAATACTCTCTCGTCTCTTCCTTTCCCAGAACACAAATGGACCCCTCCTTCGCGCGCAGCGGGACCCAAAAGTGGGCGGGGCCTAATTTTGGGCGGGAAATGGGGGAAGAGGGAGAAGAAGAGCGGTCCATCAGCCATTTATTCCTTGTCTTCCTTTCTTTTTTGGTTCTGTTTTGGGTCTTTTTTATTGATTTTTCAAAATTTGAACATTTTCTATTGATTTTTTGGCCGTTTTTTGACAATTTTTAGGCATTTTAAGGTATTCTAGGCTACTTTCAGGCATTTTGGACCATTTTTAAACAAATTCAGTTCAATTTTGGTATACCTTAAGTCATTTTAAGCCAATTTTTAGCTATTTTAAGTCAATTTTGAGATATTTTAAGTCAATTTTGAGATATTTTAAGTCAATTTATGCTTATTTTAAGCTATTTTAAGTCAATTTTGCGTCATTTTTAGGTTATTTTGGGCTATTTTAAGTGAATTTTGGGCTATTTTATAAACTATTTCTCTCGATTTTTCCATCCCTTTCTCTCTCTCTCTCTCTCTCTATGTTCCTCTATTTTTCCTTCCAAAACTCTGCCAATTTTCAGACTGTCGACGCCGGCAAAAGTACTAAAAGTGGGCGGAGCCAACGAGTGGATTCCAGCAAGAACAATGAAGATCGAAGACACGTGGATGAAGCTTGAATTGGGATTGAATTCCATTTTCAAACATCAGGAACTGGGTGCCAGAGAGTATTTGGATTATTATAAGTGAGTTTTGGCTGGATGTGAGGGTTTTTAGGCTGAAAATTGGCTAAAAATCGGGTATTTTAAGACAAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAG</canonical>
            <polymorphic>CCCCAATAACCAAACCGTTCGATTTGTCCTTTCTCTCTAACACTCTCCTCTTTTCCAATACTCTCTCGTCTCTTCCTTTCCCAGAACACAAATGGACCCCTCCTTCGCGCGCAGCGGGACCCAAAAGTGGGCGGGGCCTAATTTTGGGCGGGAAATGGGGGAAGAGGGAGAAGAAGAGCGGTCCATCAGCCATTTATTCCTTGTCTTCCTTTCTTTTTTGGTTCTGTTTTGGGTCTTTTTTATTGATTTTTCAAAATTTGAACATTTTCTATTGATTTTTTGGCCGTTTTTTGACAATTTTTAGGCATTTTAAGGTATTCTAGGCTACTTTCAGGCATTTTGGACCATTTTTAAACAAATTCAGTTCAATTTTGGTATACCTTAAGTCATTTTAAGCCAATTTTTAGCTATTTTAAGTCAATTTTGAGATATTTTAAGTCAATTTTGAGATATTTTAAGTCAATTTATGCTTATTTTAAGCTATTTTAAGTCAATTTTGMGTCATTTTTAGGTTATTTTGGGCTATTTTAAGTGAATTTTGGGCTATTTTATAAACTATTTCTCTCGATTTTTCCATCCCTTTCTCTCTCTCTCTCTCTCTCTATGTTCCTCTATTTTTCCTTCCAAAACTCTGCCAATTTTCAGACTGTCGACGCCGGCAAAAGTACTAAAAGTGGGCGGAGCCAACGAGTGGATTCCAGCAAGAACAATGAAGATCGAAGACACGTGGATGAAGCTTGAATTGGGATTGAATTCCATTTTCAAACATCAGGAACTGGGTGCCAGAGAGTATTTGGATTATTATAAGTGAGTTTTGGCTGGATGTGAGGGTTTTTAGGCTGAAAATTGGCTAAAAATCGGGTATTTTAAGACAAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTCCTTGTCTTCCTTTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>GGAAAAATCGAGAGAAATAGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>381</pcr_amplicon_size>
		<canonical_amplicon>TATTCCTTGTCTTCCTTTCTTTTTTGGTTCTGTTTTGGGTCTTTTTTATTGATTTTTCAAAATTTGAACATTTTCTATTGATTTTTTGGCCGTTTTTTGACAATTTTTAGGCATTTTAAGGTATTCTAGGCTACTTTCAGGCATTTTGGACCATTTTTAAACAAATTCAGTTCAATTTTGGTATACCTTAAGTCATTTTAAGCCAATTTTTAGCTATTTTAAGTCAATTTTGAGATATTTTAAGTCAATTTTGAGATATTTTAAGTCAATTTATGCTTATTTTAAGCTATTTTAAGTCAATTTTGCGTCATTTTTAGGTTATTTTGGGCTATTTTAAGTGAATTTTGGGCTATTTTATAAACTATTTCTCTCGATTTTTCC</canonical_amplicon>
		<polymorphic_amplicon>TATTCCTTGTCTTCCTTTCTTTTTTGGTTCTGTTTTGGGTCTTTTTTATTGATTTTTCAAAATTTGAACATTTTCTATTGATTTTTTGGCCGTTTTTTGACAATTTTTAGGCATTTTAAGGTATTCTAGGCTACTTTCAGGCATTTTGGACCATTTTTAAACAAATTCAGTTCAATTTTGGTATACCTTAAGTCATTTTAAGCCAATTTTTAGCTATTTTAAGTCAATTTTGAGATATTTTAAGTCAATTTTGAGATATTTTAAGTCAATTTATGCTTATTTTAAGCTATTTTAAGTCAATTTTGMGTCATTTTTAGGTTATTTTGGGCTATTTTAAGTGAATTTTGGGCTATTTTATAAACTATTTCTCTCGATTTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33021</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>137427</contig_pos>
        <strand></strand>
        <context>caattttgmg[T/C]catttttagg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTTTAAGTCAATTTATGCTTATTTTAAGCTATTTTAAGTCAATTTTGCG</left_flank>
        <right_flank>CATTTTTAGGTTATTTTGGGCTATTTTAAGTGAATTTTGGGCTATTTTAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAATAACCAAACCGTTCGATTTGTCCTTTCTCTCTAACACTCTCCTCTTTTCCAATACTCTCTCGTCTCTTCCTTTCCCAGAACACAAATGGACCCCTCCTTCGCGCGCAGCGGGACCCAAAAGTGGGCGGGGCCTAATTTTGGGCGGGAAATGGGGGAAGAGGGAGAAGAAGAGCGGTCCATCAGCCATTTATTCCTTGTCTTCCTTTCTTTTTTGGTTCTGTTTTGGGTCTTTTTTATTGATTTTTCAAAATTTGAACATTTTCTATTGATTTTTTGGCCGTTTTTTGACAATTTTTAGGCATTTTAAGGTATTCTAGGCTACTTTCAGGCATTTTGGACCATTTTTAAACAAATTCAGTTCAATTTTGGTATACCTTAAGTCATTTTAAGCCAATTTTTAGCTATTTTAAGTCAATTTTGAGATATTTTAAGTCAATTTTGAGATATTTTAAGTCAATTTATGCTTATTTTAAGCTATTTTAAGTCAATTTTGCGTCATTTTTAGGTTATTTTGGGCTATTTTAAGTGAATTTTGGGCTATTTTATAAACTATTTCTCTCGATTTTTCCATCCCTTTCTCTCTCTCTCTCTCTCTCTATGTTCCTCTATTTTTCCTTCCAAAACTCTGCCAATTTTCAGACTGTCGACGCCGGCAAAAGTACTAAAAGTGGGCGGAGCCAACGAGTGGATTCCAGCAAGAACAATGAAGATCGAAGACACGTGGATGAAGCTTGAATTGGGATTGAATTCCATTTTCAAACATCAGGAACTGGGTGCCAGAGAGTATTTGGATTATTATAAGTGAGTTTTGGCTGGATGTGAGGGTTTTTAGGCTGAAAATTGGCTAAAAATCGGGTATTTTAAGACAAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAGCA</canonical>
            <polymorphic>CCAATAACCAAACCGTTCGATTTGTCCTTTCTCTCTAACACTCTCCTCTTTTCCAATACTCTCTCGTCTCTTCCTTTCCCAGAACACAAATGGACCCCTCCTTCGCGCGCAGCGGGACCCAAAAGTGGGCGGGGCCTAATTTTGGGCGGGAAATGGGGGAAGAGGGAGAAGAAGAGCGGTCCATCAGCCATTTATTCCTTGTCTTCCTTTCTTTTTTGGTTCTGTTTTGGGTCTTTTTTATTGATTTTTCAAAATTTGAACATTTTCTATTGATTTTTTGGCCGTTTTTTGACAATTTTTAGGCATTTTAAGGTATTCTAGGCTACTTTCAGGCATTTTGGACCATTTTTAAACAAATTCAGTTCAATTTTGGTATACCTTAAGTCATTTTAAGCCAATTTTTAGCTATTTTAAGTCAATTTTGAGATATTTTAAGTCAATTTTGAGATATTTTAAGTCAATTTATGCTTATTTTAAGCTATTTTAAGTCAATTTTGCGYCATTTTTAGGTTATTTTGGGCTATTTTAAGTGAATTTTGGGCTATTTTATAAACTATTTCTCTCGATTTTTCCATCCCTTTCTCTCTCTCTCTCTCTCTCTATGTTCCTCTATTTTTCCTTCCAAAACTCTGCCAATTTTCAGACTGTCGACGCCGGCAAAAGTACTAAAAGTGGGCGGAGCCAACGAGTGGATTCCAGCAAGAACAATGAAGATCGAAGACACGTGGATGAAGCTTGAATTGGGATTGAATTCCATTTTCAAACATCAGGAACTGGGTGCCAGAGAGTATTTGGATTATTATAAGTGAGTTTTGGCTGGATGTGAGGGTTTTTAGGCTGAAAATTGGCTAAAAATCGGGTATTTTAAGACAAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTCCTTGTCTTCCTTTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>GGAAAAATCGAGAGAAATAGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>381</pcr_amplicon_size>
		<canonical_amplicon>TATTCCTTGTCTTCCTTTCTTTTTTGGTTCTGTTTTGGGTCTTTTTTATTGATTTTTCAAAATTTGAACATTTTCTATTGATTTTTTGGCCGTTTTTTGACAATTTTTAGGCATTTTAAGGTATTCTAGGCTACTTTCAGGCATTTTGGACCATTTTTAAACAAATTCAGTTCAATTTTGGTATACCTTAAGTCATTTTAAGCCAATTTTTAGCTATTTTAAGTCAATTTTGAGATATTTTAAGTCAATTTTGAGATATTTTAAGTCAATTTATGCTTATTTTAAGCTATTTTAAGTCAATTTTGCGTCATTTTTAGGTTATTTTGGGCTATTTTAAGTGAATTTTGGGCTATTTTATAAACTATTTCTCTCGATTTTTCC</canonical_amplicon>
		<polymorphic_amplicon>TATTCCTTGTCTTCCTTTCTTTTTTGGTTCTGTTTTGGGTCTTTTTTATTGATTTTTCAAAATTTGAACATTTTCTATTGATTTTTTGGCCGTTTTTTGACAATTTTTAGGCATTTTAAGGTATTCTAGGCTACTTTCAGGCATTTTGGACCATTTTTAAACAAATTCAGTTCAATTTTGGTATACCTTAAGTCATTTTAAGCCAATTTTTAGCTATTTTAAGTCAATTTTGAGATATTTTAAGTCAATTTTGAGATATTTTAAGTCAATTTATGCTTATTTTAAGCTATTTTAAGTCAATTTTGCGYCATTTTTAGGTTATTTTGGGCTATTTTAAGTGAATTTTGGGCTATTTTATAAACTATTTCTCTCGATTTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33022</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>137458</contig_pos>
        <strand></strand>
        <context>ctattttaag[T/C]gaattttggg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTTTAAGTCAATTTTGCGTCATTTTTAGGTTATTTTGGGCTATTTTAAG</left_flank>
        <right_flank>GAATTTTGGGCTATTTTATAAACTATTTCTCTCGATTTTTCCATCCCTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCTAACACTCTCCTCTTTTCCAATACTCTCTCGTCTCTTCCTTTCCCAGAACACAAATGGACCCCTCCTTCGCGCGCAGCGGGACCCAAAAGTGGGCGGGGCCTAATTTTGGGCGGGAAATGGGGGAAGAGGGAGAAGAAGAGCGGTCCATCAGCCATTTATTCCTTGTCTTCCTTTCTTTTTTGGTTCTGTTTTGGGTCTTTTTTATTGATTTTTCAAAATTTGAACATTTTCTATTGATTTTTTGGCCGTTTTTTGACAATTTTTAGGCATTTTAAGGTATTCTAGGCTACTTTCAGGCATTTTGGACCATTTTTAAACAAATTCAGTTCAATTTTGGTATACCTTAAGTCATTTTAAGCCAATTTTTAGCTATTTTAAGTCAATTTTGAGATATTTTAAGTCAATTTTGAGATATTTTAAGTCAATTTATGCTTATTTTAAGCTATTTTAAGTCAATTTTGCGTCATTTTTAGGTTATTTTGGGCTATTTTAAGTGAATTTTGGGCTATTTTATAAACTATTTCTCTCGATTTTTCCATCCCTTTCTCTCTCTCTCTCTCTCTCTATGTTCCTCTATTTTTCCTTCCAAAACTCTGCCAATTTTCAGACTGTCGACGCCGGCAAAAGTACTAAAAGTGGGCGGAGCCAACGAGTGGATTCCAGCAAGAACAATGAAGATCGAAGACACGTGGATGAAGCTTGAATTGGGATTGAATTCCATTTTCAAACATCAGGAACTGGGTGCCAGAGAGTATTTGGATTATTATAAGTGAGTTTTGGCTGGATGTGAGGGTTTTTAGGCTGAAAATTGGCTAAAAATCGGGTATTTTAAGACAAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTTTGCTCAGAATTGGTT</canonical>
            <polymorphic>TCTCTAACACTCTCCTCTTTTCCAATACTCTCTCGTCTCTTCCTTTCCCAGAACACAAATGGACCCCTCCTTCGCGCGCAGCGGGACCCAAAAGTGGGCGGGGCCTAATTTTGGGCGGGAAATGGGGGAAGAGGGAGAAGAAGAGCGGTCCATCAGCCATTTATTCCTTGTCTTCCTTTCTTTTTTGGTTCTGTTTTGGGTCTTTTTTATTGATTTTTCAAAATTTGAACATTTTCTATTGATTTTTTGGCCGTTTTTTGACAATTTTTAGGCATTTTAAGGTATTCTAGGCTACTTTCAGGCATTTTGGACCATTTTTAAACAAATTCAGTTCAATTTTGGTATACCTTAAGTCATTTTAAGCCAATTTTTAGCTATTTTAAGTCAATTTTGAGATATTTTAAGTCAATTTTGAGATATTTTAAGTCAATTTATGCTTATTTTAAGCTATTTTAAGTCAATTTTGCGTCATTTTTAGGTTATTTTGGGCTATTTTAAGYGAATTTTGGGCTATTTTATAAACTATTTCTCTCGATTTTTCCATCCCTTTCTCTCTCTCTCTCTCTCTCTATGTTCCTCTATTTTTCCTTCCAAAACTCTGCCAATTTTCAGACTGTCGACGCCGGCAAAAGTACTAAAAGTGGGCGGAGCCAACGAGTGGATTCCAGCAAGAACAATGAAGATCGAAGACACGTGGATGAAGCTTGAATTGGGATTGAATTCCATTTTCAAACATCAGGAACTGGGTGCCAGAGAGTATTTGGATTATTATAAGTGAGTTTTGGCTGGATGTGAGGGTTTTTAGGCTGAAAATTGGCTAAAAATCGGGTATTTTAAGACAAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTTTGCTCAGAATTGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>405 142 132 53 46 41 32 31 28 28 17 17 10 9 5 4</canonical_bands>
                <polymorphic_bands>547 132 53 46 41 32 31 28 28 17 17 10 9 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTATTCCTTGTCTTCCTTTCTT</pcr_primer_p1>
		<pcr_primer_p2>GAGTTTTGGAAGGAAAAATAGAG</pcr_primer_p2>
		<pcr_amplicon_size>440</pcr_amplicon_size>
		<canonical_amplicon>TTTATTCCTTGTCTTCCTTTCTTTTTTGGTTCTGTTTTGGGTCTTTTTTATTGATTTTTCAAAATTTGAACATTTTCTATTGATTTTTTGGCCGTTTTTTGACAATTTTTAGGCATTTTAAGGTATTCTAGGCTACTTTCAGGCATTTTGGACCATTTTTAAACAAATTCAGTTCAATTTTGGTATACCTTAAGTCATTTTAAGCCAATTTTTAGCTATTTTAAGTCAATTTTGAGATATTTTAAGTCAATTTTGAGATATTTTAAGTCAATTTATGCTTATTTTAAGCTATTTTAAGTCAATTTTGCGTCATTTTTAGGTTATTTTGGGCTATTTTAAGTGAATTTTGGGCTATTTTATAAACTATTTCTCTCGATTTTTCCATCCCTTTCTCTCTCTCTCTCTCTCTCTATGTTCCTCTATTTTTCCTTCCAAAACTC</canonical_amplicon>
		<polymorphic_amplicon>TTTATTCCTTGTCTTCCTTTCTTTTTTGGTTCTGTTTTGGGTCTTTTTTATTGATTTTTCAAAATTTGAACATTTTCTATTGATTTTTTGGCCGTTTTTTGACAATTTTTAGGCATTTTAAGGTATTCTAGGCTACTTTCAGGCATTTTGGACCATTTTTAAACAAATTCAGTTCAATTTTGGTATACCTTAAGTCATTTTAAGCCAATTTTTAGCTATTTTAAGTCAATTTTGAGATATTTTAAGTCAATTTTGAGATATTTTAAGTCAATTTATGCTTATTTTAAGCTATTTTAAGTCAATTTTGCGTCATTTTTAGGTTATTTTGGGCTATTTTAAGYGAATTTTGGGCTATTTTATAAACTATTTCTCTCGATTTTTCCATCCCTTTCTCTCTCTCTCTCTCTCTCTATGTTCCTCTATTTTTCCTTCCAAAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33023</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>137999</contig_pos>
        <strand>+</strand>
        <context>CCTRAGCTTC[C/T]AAGCTCTAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAATTGGTTTTTGTAGGATTTTTCGAACGGAATTGAGGTCCTGAGCTTC</left_flank>
        <right_flank>AAGCTCTAATTTGATTTCCGTCTTGACCTACCTAGCTTATTTTTAAGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCCCTTTCTCTCTCTCTCTCTCTCTCTATGTTCCTCTATTTTTCCTTCCAAAACTCTGCCAATTTTCAGACTGTCGACGCCGGCAAAAGTACTAAAAGTGGGCGGAGCCAACGAGTGGATTCCAGCAAGAACAATGAAGATCGAAGACACGTGGATGAAGCTTGAATTGGGATTGAATTCCATTTTCAAACATCAGGAACTGGGTGCCAGAGAGTATTTGGATTATTATAAGTGAGTTTTGGCTGGATGTGAGGGTTTTTAGGCTGAAAATTGGCTAAAAATCGGGTATTTTAAGACAAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTTTGCTCAGAATTGGTTTTTGTAGGATTTTTCGAACGGAATTGAGGTCCTGAGCTTCTAAGCTCTAATTTGATTTCCGTCTTGACCTACCTAGCTTATTTTTAAGATTTGGAGCATTTTGGAGCGAAAATAGCATAGGTCCTATTTGGCTCAAATTTTGAAGTTTTTGGAAATTTTGTCCGGATTCGTAATTCTGAGCTCATAAGCTTTCATTTGGTACCCATATTGCTATATCTAGCTCACTTTCGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACAAAGCCTATTTTGCTCAAAATCGAAATTTTTTGAAAATTTTGAACCGGTCTTGAGGTCCAGAGCTCTTAAGCTTTTATTTGGTACTCATATTGCTGCATCTAGCTCATTTTTGAAATTTGGAGCATTTTCTAGCAAAAAGAGCACAAAGCCTATTTTGCTCAAAATCGAAGTTTTTTGAAAATTTTGGACCGGTCTTGAGGTCCAGAGCTCATAAGCTTTCATTTGGTACCCATATTGCTATATCTAGCTCATTTTCGAAATTTGGAGCATTTTGGAGC</canonical>
            <polymorphic>CATCCCTTTCTCTCTCTCTCTCTCTCTCTATGTTCCTCTATTTTTCCTTCCAAAACTCTGCCAATTTTCAGACTGTCGACGCCGGCAAAAGTACTAAAAGTGGGCGGAGCCAACGAGTGGATTCCAGCAAGAACAATGAAGATCGAAGACACGTGGATGAAGCTTGAATTGGGATTGAATTCCATTTTCAAACATCAGGAACTGGGTGCCAGAGAGTATTTGGATTATTATAAGTGAGTTTTGGCTGGATGTGAGGGTTTTTAGGCTGAAAATTGGCTAAAAATCGGGTATTTTAAGACAAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTTTGCTCAGAATTGGTTTTTGTAGGATTTTTCGAACGGAATTGAGGTCCTGAGCTTCYAAGCTCTAATTTGATTTCCGTCTTGACCTACCTAGCTTATTTTTAAGATTTGGAGCATTTTGGAGCGAAAATAGCATAGGTCCTATTTGGCTCAAATTTTGAAGTTTTTGGAAATTTTGTCCGGATTCGTAATTCTGAGCTCATAAGCTTTCATTTGGTACCCATATTGCTATATCTAGCTCACTTTCGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACAAAGCCTATTTTGCTCAAAATCGAAATTTTTTGAAAATTTTGAACCGGTCTTGAGGTCCAGAGCTCTTAAGCTTTTATTTGGTACTCATATTGCTGCATCTAGCTCATTTTTGAAATTTGGAGCATTTTCTAGCAAAAAGAGCACAAAGCCTATTTTGCTCAAAATCGAAGTTTTTTGAAAATTTTGGACCGGTCTTGAGGTCCAGAGCTCATAAGCTTTCATTTGGTACCCATATTGCTATATCTAGCTCATTTTCGAAATTTGGAGCATTTTGGAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>365 309 138 136 44 8</canonical_bands>
                <polymorphic_bands>365 309 144 138 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCAGCTCAGAAATCATAG</pcr_primer_p1>
		<pcr_primer_p2>GCTCCAAATCTTAAAAATAAGCTA</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTTTGCTCAGAATTGGTTTTTGTAGGATTTTTCGAACGGAATTGAGGTCCTGAGCTTCTAAGCTCTAATTTGATTTCCGTCTTGACCTACCTAGCTTATTTTTAAGATTTGGAGC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTTTGCTCAGAATTGGTTTTTGTAGGATTTTTCGAACGGAATTGAGGTCCTGAGCTTCYAAGCTCTAATTTGATTTCCGTCTTGACCTACCTAGCTTATTTTTAAGATTTGGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33024</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>138016</contig_pos>
        <strand>+</strand>
        <context>TAATTTGATT[C/T]CCGTCTTGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTTTTCGAACGGAATTGAGGTCCTGAGCTTCTAAGCTCTAATTTGATT</left_flank>
        <right_flank>CCGTCTTGACCTACCTAGCTTATTTTTAAGATTTGGAGCATTTTGGAGCG</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTCTCTCTCTATGTTCCTCTATTTTTCCTTCCAAAACTCTGCCAATTTTCAGACTGTCGACGCCGGCAAAAGTACTAAAAGTGGGCGGAGCCAACGAGTGGATTCCAGCAAGAACAATGAAGATCGAAGACACGTGGATGAAGCTTGAATTGGGATTGAATTCCATTTTCAAACATCAGGAACTGGGTGCCAGAGAGTATTTGGATTATTATAAGTGAGTTTTGGCTGGATGTGAGGGTTTTTAGGCTGAAAATTGGCTAAAAATCGGGTATTTTAAGACAAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTTTGCTCAGAATTGGTTTTTGTAGGATTTTTCGAACGGAATTGAGGTCCTGAGCTTCTAAGCTCTAATTTGATTTCCGTCTTGACCTACCTAGCTTATTTTTAAGATTTGGAGCATTTTGGAGCGAAAATAGCATAGGTCCTATTTGGCTCAAATTTTGAAGTTTTTGGAAATTTTGTCCGGATTCGTAATTCTGAGCTCATAAGCTTTCATTTGGTACCCATATTGCTATATCTAGCTCACTTTCGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACAAAGCCTATTTTGCTCAAAATCGAAATTTTTTGAAAATTTTGAACCGGTCTTGAGGTCCAGAGCTCTTAAGCTTTTATTTGGTACTCATATTGCTGCATCTAGCTCATTTTTGAAATTTGGAGCATTTTCTAGCAAAAAGAGCACAAAGCCTATTTTGCTCAAAATCGAAGTTTTTTGAAAATTTTGGACCGGTCTTGAGGTCCAGAGCTCATAAGCTTTCATTTGGTACCCATATTGCTATATCTAGCTCATTTTCGAAATTTGGAGCATTTTGGAGCAAAAAGAGCATAGGTCC</canonical>
            <polymorphic>CTCTCTCTCTCTATGTTCCTCTATTTTTCCTTCCAAAACTCTGCCAATTTTCAGACTGTCGACGCCGGCAAAAGTACTAAAAGTGGGCGGAGCCAACGAGTGGATTCCAGCAAGAACAATGAAGATCGAAGACACGTGGATGAAGCTTGAATTGGGATTGAATTCCATTTTCAAACATCAGGAACTGGGTGCCAGAGAGTATTTGGATTATTATAAGTGAGTTTTGGCTGGATGTGAGGGTTTTTAGGCTGAAAATTGGCTAAAAATCGGGTATTTTAAGACAAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTTTGCTCAGAATTGGTTTTTGTAGGATTTTTCGAACGGAATTGAGGTCCTGAGCTTCTAAGCTCTAATTTGATTYCCGTCTTGACCTACCTAGCTTATTTTTAAGATTTGGAGCATTTTGGAGCGAAAATAGCATAGGTCCTATTTGGCTCAAATTTTGAAGTTTTTGGAAATTTTGTCCGGATTCGTAATTCTGAGCTCATAAGCTTTCATTTGGTACCCATATTGCTATATCTAGCTCACTTTCGAAATTTGGAGCATTTTGGAGCAAAAAGAGCACAAAGCCTATTTTGCTCAAAATCGAAATTTTTTGAAAATTTTGAACCGGTCTTGAGGTCCAGAGCTCTTAAGCTTTTATTTGGTACTCATATTGCTGCATCTAGCTCATTTTTGAAATTTGGAGCATTTTCTAGCAAAAAGAGCACAAAGCCTATTTTGCTCAAAATCGAAGTTTTTTGAAAATTTTGGACCGGTCTTGAGGTCCAGAGCTCATAAGCTTTCATTTGGTACCCATATTGCTATATCTAGCTCATTTTCGAAATTTGGAGCATTTTGGAGCAAAAAGAGCATAGGTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCAGCTCAGAAATCATAG</pcr_primer_p1>
		<pcr_primer_p2>AAAATTTGAGCCAAATAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTTTGCTCAGAATTGGTTTTTGTAGGATTTTTCGAACGGAATTGAGGTCCTGAGCTTCTAAGCTCTAATTTGATTTCCGTCTTGACCTACCTAGCTTATTTTTAAGATTTGGAGCATTTTGGAGCGAAAATAGCATAGGTCCTATTTGGCTCAAATTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCAGCTCAGAAATCATAGTTTCAACTTGTAAATAAGGATTTTGGACTCCTCAAATTTTCAGCTTCAAAATGAGCCCAAACACGACACATTTTTGTGCATTTTGAATTTTTCCAAATATGGAGCACAAATGAGCCCTAGTTTGCTCAGAATTGGTTTTTGTAGGATTTTTCGAACGGAATTGAGGTCCTGAGCTTCTAAGCTCTAATTTGATTYCCGTCTTGACCTACCTAGCTTATTTTTAAGATTTGGAGCATTTTGGAGCGAAAATAGCATAGGTCCTATTTGGCTCAAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33025</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>144852</contig_pos>
        <strand></strand>
        <context>TCGAAAAATC[G/A]GAAACTCTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAAAATTCGGAATTTCCTCAAAATCCGGAAATTCTGAAATTCGAAAAATC</left_flank>
        <right_flank>GAAACTCTAAAACTACCGTGATAACGCACAAAACCACAAATTTGACTTTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTAAATTTCCGAATTCCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTTTGAATTTCTAAATTTCCGAATTCCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAAATTTTGCTCATTGGAAAAGTTTGGAAATTTGAAAAATTCGAAAAGACTCGAAAAACCAAAATTCTGATAACCCGGAAATTCTGAAACTTTGAAAATACGAAACTCGGAAATTCGCAAACCCTGGGTCCTGGGTCCTGGGTCCTGGGTCCTGGATCCTGGGTCCAAAAATTATAAAATTCGGAATTTCCTCAAAATCCGGAAATTCTGAAATTCGAAAAATCGGAAACTCTAAAACTACCGTGATAACGCACAAAACCACAAATTTGACTTTTTATCAGTTACCATCAACCGCAATTTGACTGAAAATTTGCTCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTTTTCTGGAATTTTTCGGAAGAAATTTTTTTTTGATAGTACAGAATATTTTTGTAGTCAAATACCTTAAGGAAAGTAGGCGGAGCCATTTAACAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATAGAGAACATATTGAGGATAGAGAG</canonical>
            <polymorphic>TCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTAAATTTCCGAATTCCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTTTGAATTTCTAAATTTCCGAATTCCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAAATTTTGCTCATTGGAAAAGTTTGGAAATTTGAAAAATTCGAAAAGACTCGAAAAACCAAAATTCTGATAACCCGGAAATTCTGAAACTTTGAAAATACGAAACTCGGAAATTCGCAAACCCTGGGTCCTGGGTCCTGGGTCCTGGGTCCTGGATCCTGGGTCCAAAAATTATAAAATTCGGAATTTCCTCAAAATCCGGAAATTCTGAAATTCGAAAAATCRGAAACTCTAAAACTACCGTGATAACGCACAAAACCACAAATTTGACTTTTTATCAGTTACCATCAACCGCAATTTGACTGAAAATTTGCTCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTTTTCTGGAATTTTTCGGAAGAAATTTTTTTTTGATAGTACAGAATATTTTTGTAGTCAAATACCTTAAGGAAAGTAGGCGGAGCCATTTAACAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATAGAGAACATATTGAGGATAGAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGGACCACTATATCTCTTCTG</pcr_primer_p1>
		<pcr_primer_p2>ATGAGCAAATTTTCAGTCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>956</pcr_amplicon_size>
		<canonical_amplicon>CGGAAACTCTAAAACTACCGTGATAACGCACAAAACCACAAATTTGACTTTTTATCAGTTACCATCAACCGCAATTTGACTGAAAATTTGCTCAT</canonical_amplicon>
		<polymorphic_amplicon>CRGAAACTCTAAAACTACCGTGATAACGCACAAAACCACAAATTTGACTTTTTATCAGTTACCATCAACCGCAATTTGACTGAAAATTTGCTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33026</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>144910</contig_pos>
        <strand></strand>
        <context>TTTTATCAGT[T/C]ACCATCAACC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAAAACTACCGTGATAACGCACAAAACCACAAATTTGACTTTTTATCAGT</left_flank>
        <right_flank>ACCATCAACCGCAATTTGACTGAAAATTTGCTCATCAGAGAAAAAGTACT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTTTGAATTTCTAAATTTCCGAATTCCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAAATTTTGCTCATTGGAAAAGTTTGGAAATTTGAAAAATTCGAAAAGACTCGAAAAACCAAAATTCTGATAACCCGGAAATTCTGAAACTTTGAAAATACGAAACTCGGAAATTCGCAAACCCTGGGTCCTGGGTCCTGGGTCCTGGGTCCTGGATCCTGGGTCCAAAAATTATAAAATTCGGAATTTCCTCAAAATCCGGAAATTCTGAAATTCGAAAAATCGGAAACTCTAAAACTACCGTGATAACGCACAAAACCACAAATTTGACTTTTTATCAGTTACCATCAACCGCAATTTGACTGAAAATTTGCTCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTTTTCTGGAATTTTTCGGAAGAAATTTTTTTTTGATAGTACAGAATATTTTTGTAGTCAAATACCTTAAGGAAAGTAGGCGGAGCCATTTAACAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATAGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAGCTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAA</canonical>
            <polymorphic>TGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTTTGAATTTCTAAATTTCCGAATTCCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAAATTTTGCTCATTGGAAAAGTTTGGAAATTTGAAAAATTCGAAAAGACTCGAAAAACCAAAATTCTGATAACCCGGAAATTCTGAAACTTTGAAAATACGAAACTCGGAAATTCGCAAACCCTGGGTCCTGGGTCCTGGGTCCTGGGTCCTGGATCCTGGGTCCAAAAATTATAAAATTCGGAATTTCCTCAAAATCCGGAAATTCTGAAATTCGAAAAATCGGAAACTCTAAAACTACCGTGATAACGCACAAAACCACAAATTTGACTTTTTATCAGTYACCATCAACCGCAATTTGACTGAAAATTTGCTCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTTTTCTGGAATTTTTCGGAAGAAATTTTTTTTTGATAGTACAGAATATTTTTGTAGTCAAATACCTTAAGGAAAGTAGGCGGAGCCATTTAACAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATAGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAGCTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCTGAAATTCGAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>TGATAAGACAAAAGGATGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>AAATTCTGAAATTCGAAAAATCGGAAACTCTAAAACTACCGTGATAACGCACAAAACCACAAATTTGACTTTTTATCAGTTACCATCAACCGCAATTTGACTGAAAATTTGCTCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCA</canonical_amplicon>
		<polymorphic_amplicon>AAATTCTGAAATTCGAAAAATCGGAAACTCTAAAACTACCGTGATAACGCACAAAACCACAAATTTGACTTTTTATCAGTYACCATCAACCGCAATTTGACTGAAAATTTGCTCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33027</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>144977</contig_pos>
        <strand></strand>
        <context>TTCAGAAATT[C/T]TGGAATTCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGACTGAAAATTTGCTCATCAGAGAAAAAGTACTTCAAAATTCAGAAATT</left_flank>
        <right_flank>TGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTGAATTTCTGAATTTTTGAATTTCTAAATTTCCGAATTCCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAAATTTTGCTCATTGGAAAAGTTTGGAAATTTGAAAAATTCGAAAAGACTCGAAAAACCAAAATTCTGATAACCCGGAAATTCTGAAACTTTGAAAATACGAAACTCGGAAATTCGCAAACCCTGGGTCCTGGGTCCTGGGTCCTGGGTCCTGGATCCTGGGTCCAAAAATTATAAAATTCGGAATTTCCTCAAAATCCGGAAATTCTGAAATTCGAAAAATCGGAAACTCTAAAACTACCGTGATAACGCACAAAACCACAAATTTGACTTTTTATCAGTTACCATCAACCGCAATTTGACTGAAAATTTGCTCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTTTTCTGGAATTTTTCGGAAGAAATTTTTTTTTGATAGTACAGAATATTTTTGTAGTCAAATACCTTAAGGAAAGTAGGCGGAGCCATTTAACAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATAGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAGCTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGA</canonical>
            <polymorphic>ATTTTTGAATTTCTGAATTTTTGAATTTCTAAATTTCCGAATTCCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAAATTTTGCTCATTGGAAAAGTTTGGAAATTTGAAAAATTCGAAAAGACTCGAAAAACCAAAATTCTGATAACCCGGAAATTCTGAAACTTTGAAAATACGAAACTCGGAAATTCGCAAACCCTGGGTCCTGGGTCCTGGGTCCTGGGTCCTGGATCCTGGGTCCAAAAATTATAAAATTCGGAATTTCCTCAAAATCCGGAAATTCTGAAATTCGAAAAATCGGAAACTCTAAAACTACCGTGATAACGCACAAAACCACAAATTTGACTTTTTATCAGTTACCATCAACCGCAATTTGACTGAAAATTTGCTCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTYTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTTTTCTGGAATTTTTCGGAAGAAATTTTTTTTTGATAGTACAGAATATTTTTGTAGTCAAATACCTTAAGGAAAGTAGGCGGAGCCATTTAACAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATAGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAGCTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>267 117 66 52 44 42 32 32 30 26 25 19 17 14 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7</canonical_bands>
                <polymorphic_bands>267 117 66 52 44 42 32 32 30 26 25 19 17 16 14 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>305 284 216 151 44</canonical_bands>
                <polymorphic_bands>367 305 284 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTGACTGAAAATTTGCTCAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTCTGAAATTTTGGGTGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTTGACTGAAAATTTGCTCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCACACCCAAAATTTCAGAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTGACTGAAAATTTGCTCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTYTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCACACCCAAAATTTCAGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33028</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>145013</contig_pos>
        <strand></strand>
        <context>AAAAATTAGA[G/C]TATAAAATTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGA</left_flank>
        <right_flank>TATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGAATTCCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAAATTTTGCTCATTGGAAAAGTTTGGAAATTTGAAAAATTCGAAAAGACTCGAAAAACCAAAATTCTGATAACCCGGAAATTCTGAAACTTTGAAAATACGAAACTCGGAAATTCGCAAACCCTGGGTCCTGGGTCCTGGGTCCTGGGTCCTGGATCCTGGGTCCAAAAATTATAAAATTCGGAATTTCCTCAAAATCCGGAAATTCTGAAATTCGAAAAATCGGAAACTCTAAAACTACCGTGATAACGCACAAAACCACAAATTTGACTTTTTATCAGTTACCATCAACCGCAATTTGACTGAAAATTTGCTCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTTTTCTGGAATTTTTCGGAAGAAATTTTTTTTTGATAGTACAGAATATTTTTGTAGTCAAATACCTTAAGGAAAGTAGGCGGAGCCATTTAACAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATAGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAGCTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAGACG</canonical>
            <polymorphic>CCGAATTCCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAAATTTTGCTCATTGGAAAAGTTTGGAAATTTGAAAAATTCGAAAAGACTCGAAAAACCAAAATTCTGATAACCCGGAAATTCTGAAACTTTGAAAATACGAAACTCGGAAATTCGCAAACCCTGGGTCCTGGGTCCTGGGTCCTGGGTCCTGGATCCTGGGTCCAAAAATTATAAAATTCGGAATTTCCTCAAAATCCGGAAATTCTGAAATTCGAAAAATCGGAAACTCTAAAACTACCGTGATAACGCACAAAACCACAAATTTGACTTTTTATCAGTTACCATCAACCGCAATTTGACTGAAAATTTGCTCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGASTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTTTTCTGGAATTTTTCGGAAGAAATTTTTTTTTGATAGTACAGAATATTTTTGTAGTCAAATACCTTAAGGAAAGTAGGCGGAGCCATTTAACAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATAGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAGCTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAGACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATCAGAGAAAAAGTACTTCAAA</pcr_primer_p1>
		<pcr_primer_p2>AACAGAGAGACAAAGTTCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTT</canonical_amplicon>
		<polymorphic_amplicon>TCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGASTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33029</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>145034</contig_pos>
        <strand></strand>
        <context>CTCACTTCTA[T/C]ATAAWTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTA</left_flank>
        <right_flank>ATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAAATTTTGCTCATTGGAAAAGTTTGGAAATTTGAAAAATTCGAAAAGACTCGAAAAACCAAAATTCTGATAACCCGGAAATTCTGAAACTTTGAAAATACGAAACTCGGAAATTCGCAAACCCTGGGTCCTGGGTCCTGGGTCCTGGGTCCTGGATCCTGGGTCCAAAAATTATAAAATTCGGAATTTCCTCAAAATCCGGAAATTCTGAAATTCGAAAAATCGGAAACTCTAAAACTACCGTGATAACGCACAAAACCACAAATTTGACTTTTTATCAGTTACCATCAACCGCAATTTGACTGAAAATTTGCTCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTTTTCTGGAATTTTTCGGAAGAAATTTTTTTTTGATAGTACAGAATATTTTTGTAGTCAAATACCTTAAGGAAAGTAGGCGGAGCCATTTAACAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATAGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAGCTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAGACGGAGAGGCGAGAAGAAGGCGGA</canonical>
            <polymorphic>TTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAAATTTTGCTCATTGGAAAAGTTTGGAAATTTGAAAAATTCGAAAAGACTCGAAAAACCAAAATTCTGATAACCCGGAAATTCTGAAACTTTGAAAATACGAAACTCGGAAATTCGCAAACCCTGGGTCCTGGGTCCTGGGTCCTGGGTCCTGGATCCTGGGTCCAAAAATTATAAAATTCGGAATTTCCTCAAAATCCGGAAATTCTGAAATTCGAAAAATCGGAAACTCTAAAACTACCGTGATAACGCACAAAACCACAAATTTGACTTTTTATCAGTTACCATCAACCGCAATTTGACTGAAAATTTGCTCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTAYATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTTTTCTGGAATTTTTCGGAAGAAATTTTTTTTTGATAGTACAGAATATTTTTGTAGTCAAATACCTTAAGGAAAGTAGGCGGAGCCATTTAACAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATAGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAGCTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAGACGGAGAGGCGAGAAGAAGGCGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATCAGAGAAAAAGTACTTCAAA</pcr_primer_p1>
		<pcr_primer_p2>AACAGAGAGACAAAGTTCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTT</canonical_amplicon>
		<polymorphic_amplicon>TCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTAYATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33030</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>145039</contig_pos>
        <strand></strand>
        <context>TTCTAYATAA[T/A]TTTTTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAA</left_flank>
        <right_flank>TTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAAATTTTGCTCATTGGAAAAGTTTGGAAATTTGAAAAATTCGAAAAGACTCGAAAAACCAAAATTCTGATAACCCGGAAATTCTGAAACTTTGAAAATACGAAACTCGGAAATTCGCAAACCCTGGGTCCTGGGTCCTGGGTCCTGGGTCCTGGATCCTGGGTCCAAAAATTATAAAATTCGGAATTTCCTCAAAATCCGGAAATTCTGAAATTCGAAAAATCGGAAACTCTAAAACTACCGTGATAACGCACAAAACCACAAATTTGACTTTTTATCAGTTACCATCAACCGCAATTTGACTGAAAATTTGCTCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTTTTCTGGAATTTTTCGGAAGAAATTTTTTTTTGATAGTACAGAATATTTTTGTAGTCAAATACCTTAAGGAAAGTAGGCGGAGCCATTTAACAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATAGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAGCTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAGACGGAGAGGCGAGAAGAAGGCGGAGTGGC</canonical>
            <polymorphic>GAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAAATTTTGCTCATTGGAAAAGTTTGGAAATTTGAAAAATTCGAAAAGACTCGAAAAACCAAAATTCTGATAACCCGGAAATTCTGAAACTTTGAAAATACGAAACTCGGAAATTCGCAAACCCTGGGTCCTGGGTCCTGGGTCCTGGGTCCTGGATCCTGGGTCCAAAAATTATAAAATTCGGAATTTCCTCAAAATCCGGAAATTCTGAAATTCGAAAAATCGGAAACTCTAAAACTACCGTGATAACGCACAAAACCACAAATTTGACTTTTTATCAGTTACCATCAACCGCAATTTGACTGAAAATTTGCTCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAAWTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTTTTCTGGAATTTTTCGGAAGAAATTTTTTTTTGATAGTACAGAATATTTTTGTAGTCAAATACCTTAAGGAAAGTAGGCGGAGCCATTTAACAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATAGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAGCTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAGACGGAGAGGCGAGAAGAAGGCGGAGTGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>244 78 71 58 52 32 32 32 30 26 25 23 19 18 17 14 14 13 12 10 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 1</canonical_bands>
                <polymorphic_bands>244 96 71 58 52 32 32 32 30 26 25 23 19 17 14 14 13 12 10 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATCAGAGAAAAAGTACTTCAAA</pcr_primer_p1>
		<pcr_primer_p2>AACAGAGAGACAAAGTTCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTT</canonical_amplicon>
		<polymorphic_amplicon>TCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAAWTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33031</snp_id>
        <super_contig>c007800780.Contig1</super_contig>
        <contig_pos>145067</contig_pos>
        <strand></strand>
        <context>CGATTTTTTT[T/C]CTATTTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTT</left_flank>
        <right_flank>CTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAAATTTTGCTCATTGGAAAAGTTTGGAAATTTGAAAAATTCGAAAAGACTCGAAAAACCAAAATTCTGATAACCCGGAAATTCTGAAACTTTGAAAATACGAAACTCGGAAATTCGCAAACCCTGGGTCCTGGGTCCTGGGTCCTGGGTCCTGGATCCTGGGTCCAAAAATTATAAAATTCGGAATTTCCTCAAAATCCGGAAATTCTGAAATTCGAAAAATCGGAAACTCTAAAACTACCGTGATAACGCACAAAACCACAAATTTGACTTTTTATCAGTTACCATCAACCGCAATTTGACTGAAAATTTGCTCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTTTTCTGGAATTTTTCGGAAGAAATTTTTTTTTGATAGTACAGAATATTTTTGTAGTCAAATACCTTAAGGAAAGTAGGCGGAGCCATTTAACAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATAGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAGCTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAGACGGAGAGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAG</canonical>
            <polymorphic>TTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAAATTTTGCTCATTGGAAAAGTTTGGAAATTTGAAAAATTCGAAAAGACTCGAAAAACCAAAATTCTGATAACCCGGAAATTCTGAAACTTTGAAAATACGAAACTCGGAAATTCGCAAACCCTGGGTCCTGGGTCCTGGGTCCTGGGTCCTGGATCCTGGGTCCAAAAATTATAAAATTCGGAATTTCCTCAAAATCCGGAAATTCTGAAATTCGAAAAATCGGAAACTCTAAAACTACCGTGATAACGCACAAAACCACAAATTTGACTTTTTATCAGTTACCATCAACCGCAATTTGACTGAAAATTTGCTCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTYCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTTTTCTGGAATTTTTCGGAAGAAATTTTTTTTTGATAGTACAGAATATTTTTGTAGTCAAATACCTTAAGGAAAGTAGGCGGAGCCATTTAACAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATAGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAGCTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAGACGGAGAGGCGAGAAGAAGGCGGAGTGGCGAGAAGAAGGCGGAGAGGCGAGAAGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATCAGAGAAAAAGTACTTCAAA</pcr_primer_p1>
		<pcr_primer_p2>AACAGAGAGACAAAGTTCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTTCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTT</canonical_amplicon>
		<polymorphic_amplicon>TCATCAGAGAAAAAGTACTTCAAAATTCAGAAATTCTGGAATTCTAAAATTCTCAAAATTCAAAAATTAGAGTATAAAATTGCTCACTTCTATATAATTTTTTTTTTGCCATTTCCGATTTTTTTYCTATTTTTCATCCTTTTGTCTTATCAGTTAATCAGAAAACATACACAAATTCATAAAATTACTGATAATTTGGGTGTGCCCACACCCAAAATTTCAGAATTTTCAGAACTTTGTCTCTCTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33032</snp_id>
        <super_contig>c007800845.Contig2</super_contig>
        <contig_pos>19128</contig_pos>
        <strand>+</strand>
        <context>AATAGTGCTT[G/T]TCCCGGAAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTATACGTCTGTTGGATGGTGCTGCTTGCTTCGGATGTGGAATAGTGCTT</left_flank>
        <right_flank>TCCCGGAAGTTACAGGATAAGATCTGGATAACTCCAATCGTGACGTTCGC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGTCAGATGCAGTTGAGCTCCGTGTAAACTGTGATGTTGTACTATTTTTCCTATCGGAACTGTTATTAGATTGATTAATGCCCACTAAAGGACGCTGATGAGAATTGGGTTGAATCCTTGTCTCAGAGAATGGATTTGTCAAAATACGGTCGAGCTAAAATTCTTCATCAAAATTTCATACAAAAAAATGACTCACCGGTGGTGCCGTTATGACATTTTTCTGTGTAGTGCTAGATGTGGGTTCTCCTCTCAAAGTGTCTTTGAGGTGAGTAATAGGTACTCCAACCGTCACCATTGACGAAATTATGGAGCTAATCGGACAAATAGGATCGGAGGTTCCTGGCATTGCGGCTGAAGACGACTCATTCGGCGCATCGACGATGACAGACGATCTTGCTTCTGATGCTGGGCGTGACACGTTTTGTGATTCTTCGTGTAAATATGGATCTATACGTCTGTTGGATGGTGCTGCTTGCTTCGGATGTGGAATAGTGCTTTTCCCGGAAGTTACAGGATAAGATCTGGATAACTCCAATCGTGACGTTCGCCGGGAAGTACCGGACAGTTGCGAGCTTGGGCGAGTTGTGTCTGACGTATCTGAAACAATTCACCAACATGGACTCTGTGTGTGCGGAAAACAATAACTTCAATTATTTTGAACGAACCTTCTTGACCTATCAATACTTTTTCGATTTTTGATAACTCCTCCTGCACACGCAACTCTACACTTCTGATATACTCATCTTCTGAGTCATCCGCGGTTACATCACTCGTTACACCGATGGTTATCCCAATGTTTACCATGATTACAGAAGATCTGACAAAATTGAAAATGGGCCGAGCACTCGATAACGGATTTCTGTTTTCAACAAGTTTAGTGAACGACACATTTTCCAAACTACAGTAACCCTTTTGATGTAAACCTGTGTGGAGTTGTTTTTGCGATGCCAGTTCTGTGACACTTGTTATTTATAAGTTGTGATTAGCCTTTCCAATAT</canonical>
            <polymorphic>TCGGTCAGATGCAGTTGAGCTCCGTGTAAACTGTGATGTTGTACTATTTTTCCTATCGGAACTGTTATTAGATTGATTAATGCCCACTAAAGGACGCTGATGAGAATTGGGTTGAATCCTTGTCTCAGAGAATGGATTTGTCAAAATACGGTCGAGCTAAAATTCTTCATCAAAATTTCATACAAAAAAATGACTCACCGGTGGTGCCGTTATGACATTTTTCTGTGTAGTGCTAGATGTGGGTTCTCCTCTCAAAGTGTCTTTGAGGTGAGTAATAGGTACTCCAACCGTCACCATTGACGAAATTATGGAGCTAATCGGACAAATAGGATCGGAGGTTCCTGGCATTGCGGCTGAAGACGACTCATTCGGCGCATCGACGATGACAGACGATCTTGCTTCTGATGCTGGGCGTGACACGTTTTGTGATTCTTCGTGTAAATATGGATCTATACGTCTGTTGGATGGTGCTGCTTGCTTCGGATGTGGAATAGTGCTTKTCCCGGAAGTTACAGGATAAGATCTGGATAACTCCAATCGTGACGTTCGCCGGGAAGTACCGGACAGTTGCGAGCTTGGGCGAGTTGTGTCTGACGTATCTGAAACAATTCACCAACATGGACTCTGTGTGTGCGGAAAACAATAACTTCAATTATTTTGAACGAACCTTCTTGACCTATCAATACTTTTTCGATTTTTGATAACTCCTCCTGCACACGCAACTCTACACTTCTGATATACTCATCTTCTGAGTCATCCGCGGTTACATCACTCGTTACACCGATGGTTATCCCAATGTTTACCATGATTACAGAAGATCTGACAAAATTGAAAATGGGCCGAGCACTCGATAACGGATTTCTGTTTTCAACAAGTTTAGTGAACGACACATTTTCCAAACTACAGTAACCCTTTTGATGTAAACCTGTGTGGAGTTGTTTTTGCGATGCCAGTTCTGTGACACTTGTTATTTATAAGTTGTGATTAGCCTTTCCAATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTGTGATTCTTCGTGTAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTTCGTTCAAAATAATTGAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTTTTGTGATTCTTCGTGTAAATATGGATCTATACGTCTGTTGGATGGTGCTGCTTGCTTCGGATGTGGAATAGTGCTTTTCCCGGAAGTTACAGGATAAGATCTGGATAACTCCAATCGTGACGTTCGCCGGGAAGTACCGGACAGTTGCGAGCTTGGGCGAGTTGTGTCTGACGTATCTGAAACAATTCACCAACATGGACTCTGTGTGTGCGGAAAACAATAACTTCAATTATTTTGAACGAAC</canonical_amplicon>
		<polymorphic_amplicon>GTTTTGTGATTCTTCGTGTAAATATGGATCTATACGTCTGTTGGATGGTGCTGCTTGCTTCGGATGTGGAATAGTGCTTKTCCCGGAAGTTACAGGATAAGATCTGGATAACTCCAATCGTGACGTTCGCCGGGAAGTACCGGACAGTTGCGAGCTTGGGCGAGTTGTGTCTGACGTATCTGAAACAATTCACCAACATGGACTCTGTGTGTGCGGAAAACAATAACTTCAATTATTTTGAACGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33033</snp_id>
        <super_contig>c007800845.Contig2</super_contig>
        <contig_pos>24458</contig_pos>
        <strand></strand>
        <context>ttttaaaaaa[T/G]ttattaCATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GAGACAAAACTCCCATTATTTTTTGTATGTCAAACATTTATTTTAAAAAA</left_flank>
        <right_flank>TTATTACATTTGAGAAAAAATTATTTGAAACGGAAATTTACTGGAAAGAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCAAAGGAAACGAAGATTGAAAAAATAGAAAAACGATGAACACAAGTAGATCTACAACGTCGCATATGGGATGGTCATTCGATCCAAAATCTCGAAAGGTAAGTTATTAAGATCACATGTGGAGCACAACGAATTGGATATGAATGTAGTTTGTGTTGAATAGAGAGAAACTTGTTTCTCGTCTTCAAAATACCTCACACACTTTCTTTCTTTCTCTCTACTACATTTTTTTCATTCCTTCCAATCCCAAAAACTTTTACCCGCCTCATTTCATCTCTTATAACAAGTGAGCTTTGCTCTTGGAGACAAGTATTAGTCTGAGATCCATGTGTCTCTAGTTTCTAAAAATTGAAATTGCGAGAAATTCAAAAAATGATGAGACACACTAAATTCCAAAGCGTATAGGATAGCTTTGTGTAAAACTAGAGTGAAATTCGATAACAGCCTGGAGACAAAACTCCCATTATTTTTTGTATGTCAAACATTTATTTTAAAAAATTTATTACATTTGAGAAAAAATTATTTGAAACGGAAATTTACTGGAAAGAAGAAGTAATTATAAAGAAGGATGCATCATGTTTTTTGTCTTCACTGGTCCCCCTTTCCGGCTTGCTTTTTTTCGTATAGTGAAAATGAACCGGAAATTGAATTAGACTCATTCCTTCTCTCCTGTCTCTTCCCGCACCAGAAGCCATTTTAGAAGCCGAGTAGGATCCATAAAATACTATCTAACCTGTTTTATGTTATGTTATTGCATATGCCACGTCACAAAATCCTCTTTGGCACGCCACCGCCATAGGCAGTTTGTGGTCAATGAGTCTTTGCTTACAAGGGAAGGTTTTTTAGACAACGGTTGAGAATGTGCTCAAAATTTGTACAAAGGTACTTTCGAACATGCTGAATCCGAATCCAAAAAATTTTTCAGCCCGTTCTCAAAAGGAGCCGAAATATGGCCTCTGAAAGTGATTTCAGTTCTAAAATTTGACCAAAACGTGCATT</canonical>
            <polymorphic>AGCAAAGGAAACGAAGATTGAAAAAATAGAAAAACGATGAACACAAGTAGATCTACAACGTCGCATATGGGATGGTCATTCGATCCAAAATCTCGAAAGGTAAGTTATTAAGATCACATGTGGAGCACAACGAATTGGATATGAATGTAGTTTGTGTTGAATAGAGAGAAACTTGTTTCTCGTCTTCAAAATACCTCACACACTTTCTTTCTTTCTCTCTACTACATTTTTTTCATTCCTTCCAATCCCAAAAACTTTTACCCGCCTCATTTCATCTCTTATAACAAGTGAGCTTTGCTCTTGGAGACAAGTATTAGTCTGAGATCCATGTGTCTCTAGTTTCTAAAAATTGAAATTGCGAGAAATTCAAAAAATGATGAGACACACTAAATTCCAAAGCGTATAGGATAGCTTTGTGTAAAACTAGAGTGAAATTCGATAACAGCCTGGAGACAAAACTCCCATTATTTTTTGTATGTCAAACATTTATTTTAAAAAAKTTATTACATTTGAGAAAAAATTATTTGAAACGGAAATTTACTGGAAAGAAGAAGTAATTATAAAGAAGGATGCATCATGTTTTTTGTCTTCACTGGTCCCCCTTTCCGGCTTGCTTTTTTTCGTATAGTGAAAATGAACCGGAAATTGAATTAGACTCATTCCTTCTCTCCTGTCTCTTCCCGCACCAGAAGCCATTTTAGAAGCCGAGTAGGATCCATAAAATACTATCTAACCTGTTTTATGTTATGTTATTGCATATGCCACGTCACAAAATCCTCTTTGGCACGCCACCGCCATAGGCAGTTTGTGGTCAATGAGTCTTTGCTTACAAGGGAAGGTTTTTTAGACAACGGTTGAGAATGTGCTCAAAATTTGTACAAAGGTACTTTCGAACATGCTGAATCCGAATCCAAAAAATTTTTCAGCCCGTTCTCAAAAGGAGCCGAAATATGGCCTCTGAAAGTGATTTCAGTTCTAAAATTTGACCAAAACGTGCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>363 336 65 63 46 43 37 26 21</canonical_bands>
                <polymorphic_bands>363 336 102 63 46 43 26 21</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>222 215 132 88 65 63 46 43 26 21 21 21 16 10 6 5</canonical_bands>
                <polymorphic_bands>222 215 132 88 86 63 46 43 26 21 21 16 10 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCGTATAGGATAGCTTTGTGTA</pcr_primer_p1>
		<pcr_primer_p2>TTCCGGTTCATTTTCACTATAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGCGTATAGGATAGCTTTGTGTAAAACTAGAGTGAAATTCGATAACAGCCTGGAGACAAAACTCCCATTATTTTTTGTATGTCAAACATTTATTTTAAAAAATTTATTACATTTGAGAAAAAATTATTTGAAACGGAAATTTACTGGAAAGAAGAAGTAATTATAAAGAAGGATGCATCATGTTTTTTGTCTTCACTGGTCCCCCTTTCCGGCTTGCTTTTTTTCGTATAGTGAAAATGAACCGGAA</canonical_amplicon>
		<polymorphic_amplicon>AGCGTATAGGATAGCTTTGTGTAAAACTAGAGTGAAATTCGATAACAGCCTGGAGACAAAACTCCCATTATTTTTTGTATGTCAAACATTTATTTTAAAAAAKTTATTACATTTGAGAAAAAATTATTTGAAACGGAAATTTACTGGAAAGAAGAAGTAATTATAAAGAAGGATGCATCATGTTTTTTGTCTTCACTGGTCCCCCTTTCCGGCTTGCTTTTTTTCGTATAGTGAAAATGAACCGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33034</snp_id>
        <super_contig>c007800845.Contig2</super_contig>
        <contig_pos>24631</contig_pos>
        <strand>+</strand>
        <context>CTTCTCTCCT[A/G]TCTCTTCCCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTATAGTGAAAATGAACCGGAAATTGAATTAGACTCATTCCTTCTCTCCT</left_flank>
        <right_flank>TCTCTTCCCGCACCAGAAGCCATTTTAGAAGCCGAGTAGGATCCATAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTCTCGTCTTCAAAATACCTCACACACTTTCTTTCTTTCTCTCTACTACATTTTTTTCATTCCTTCCAATCCCAAAAACTTTTACCCGCCTCATTTCATCTCTTATAACAAGTGAGCTTTGCTCTTGGAGACAAGTATTAGTCTGAGATCCATGTGTCTCTAGTTTCTAAAAATTGAAATTGCGAGAAATTCAAAAAATGATGAGACACACTAAATTCCAAAGCGTATAGGATAGCTTTGTGTAAAACTAGAGTGAAATTCGATAACAGCCTGGAGACAAAACTCCCATTATTTTTTGTATGTCAAACATTTATTTTAAAAAATTTATTACATTTGAGAAAAAATTATTTGAAACGGAAATTTACTGGAAAGAAGAAGTAATTATAAAGAAGGATGCATCATGTTTTTTGTCTTCACTGGTCCCCCTTTCCGGCTTGCTTTTTTTCGTATAGTGAAAATGAACCGGAAATTGAATTAGACTCATTCCTTCTCTCCTGTCTCTTCCCGCACCAGAAGCCATTTTAGAAGCCGAGTAGGATCCATAAAATACTATCTAACCTGTTTTATGTTATGTTATTGCATATGCCACGTCACAAAATCCTCTTTGGCACGCCACCGCCATAGGCAGTTTGTGGTCAATGAGTCTTTGCTTACAAGGGAAGGTTTTTTAGACAACGGTTGAGAATGTGCTCAAAATTTGTACAAAGGTACTTTCGAACATGCTGAATCCGAATCCAAAAAATTTTTCAGCCCGTTCTCAAAAGGAGCCGAAATATGGCCTCTGAAAGTGATTTCAGTTCTAAAATTTGACCAAAACGTGCATTTTTCGAAGTTAAAAATTAGCTATTTCAAAAAAAACTTTTTTTTTGAAAATTTTTGAAAAAATCGCCATGGGGTCCCCCACACTGCAAAAGTGATTTTTTGAAAATGTTTTAAAAAATGTTCCAATTATTCAGAAACGATAAAAATAGCATTCTGACAGATTTTTCAGCCCAAT</canonical>
            <polymorphic>TGTTTCTCGTCTTCAAAATACCTCACACACTTTCTTTCTTTCTCTCTACTACATTTTTTTCATTCCTTCCAATCCCAAAAACTTTTACCCGCCTCATTTCATCTCTTATAACAAGTGAGCTTTGCTCTTGGAGACAAGTATTAGTCTGAGATCCATGTGTCTCTAGTTTCTAAAAATTGAAATTGCGAGAAATTCAAAAAATGATGAGACACACTAAATTCCAAAGCGTATAGGATAGCTTTGTGTAAAACTAGAGTGAAATTCGATAACAGCCTGGAGACAAAACTCCCATTATTTTTTGTATGTCAAACATTTATTTTAAAAAATTTATTACATTTGAGAAAAAATTATTTGAAACGGAAATTTACTGGAAAGAAGAAGTAATTATAAAGAAGGATGCATCATGTTTTTTGTCTTCACTGGTCCCCCTTTCCGGCTTGCTTTTTTTCGTATAGTGAAAATGAACCGGAAATTGAATTAGACTCATTCCTTCTCTCCTRTCTCTTCCCGCACCAGAAGCCATTTTAGAAGCCGAGTAGGATCCATAAAATACTATCTAACCTGTTTTATGTTATGTTATTGCATATGCCACGTCACAAAATCCTCTTTGGCACGCCACCGCCATAGGCAGTTTGTGGTCAATGAGTCTTTGCTTACAAGGGAAGGTTTTTTAGACAACGGTTGAGAATGTGCTCAAAATTTGTACAAAGGTACTTTCGAACATGCTGAATCCGAATCCAAAAAATTTTTCAGCCCGTTCTCAAAAGGAGCCGAAATATGGCCTCTGAAAGTGATTTCAGTTCTAAAATTTGACCAAAACGTGCATTTTTCGAAGTTAAAAATTAGCTATTTCAAAAAAAACTTTTTTTTTGAAAATTTTTGAAAAAATCGCCATGGGGTCCCCCACACTGCAAAAGTGATTTTTTGAAAATGTTTTAAAAAATGTTCCAATTATTCAGAAACGATAAAAATAGCATTCTGACAGATTTTTCAGCCCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAATTTACTGGAAAGAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>GTGGCATATGCAATAACATAAC</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>GGAAATTTACTGGAAAGAAGAAGTAATTATAAAGAAGGATGCATCATGTTTTTTGTCTTCACTGGTCCCCCTTTCCGGCTTGCTTTTTTTCGTATAGTGAAAATGAACCGGAAATTGAATTAGACTCATTCCTTCTCTCCTGTCTCTTCCCGCACCAGAAGCCATTTTAGAAGCCGAGTAGGATCCATAAAATACTATCTAACCTGTTTTATGTTATGTTATTGCATATGCCAC</canonical_amplicon>
		<polymorphic_amplicon>GGAAATTTACTGGAAAGAAGAAGTAATTATAAAGAAGGATGCATCATGTTTTTTGTCTTCACTGGTCCCCCTTTCCGGCTTGCTTTTTTTCGTATAGTGAAAATGAACCGGAAATTGAATTAGACTCATTCCTTCTCTCCTRTCTCTTCCCGCACCAGAAGCCATTTTAGAAGCCGAGTAGGATCCATAAAATACTATCTAACCTGTTTTATGTTATGTTATTGCATATGCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33038</snp_id>
        <super_contig>c007800845.Contig2</super_contig>
        <contig_pos>50591</contig_pos>
        <strand></strand>
        <context>ATCATCCATT[A/T]AAAAAACTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAAATATTTTTTGCATGAATCATTCTATTTTTTTTTTGAATCATCCATT</left_flank>
        <right_flank>AAAAAACTACTCCTATCACTGATAATCGAGAACCGTAGGAGGACGTCATA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATTTGGATGAATTTTTACGAAAAAGTTGTCAATTACAAAAATGAAGCTCAAAAACTTGAAAATGTTCTATCCGTCTACAGTAATCCCTTTTGATATGTACCGTAAACGCTCCAATAGAATGCCTCGCAAGCCATTGACTTTGAGACCATATATCTCATTTACTGTGACAAATATCAAAAAGTTGTAAACTGATAAAGTTTTTTTTCTGACTTTATGTTAAACATTTTATCCGTTTACCACTTTTTGATAACTCTCACAGGAAATGAGATATATAGATTCAAAGTTGGCGGCTTGGGTGGCCTTCTACATCTTTGTTATCATAAAATCAAAACATTTTACGACTTTTTGATACCTTTCCCAGGAATCGAGATACTTCGGCTCAGAGTTGAAATTTAGGGGGTAATAGAGTGTTAACTGTATGATAAGAGAAATCAAAAAATCAGAAGTTAAAATATTTTTTGCATGAATCATTCTATTTTTTTTTTGAATCATCCATTAAAAAAACTACTCCTATCACTGATAATCGAGAACCGTAGGAGGACGTCATAAATAGGAAATATGTAGTTTTGAAACAAACATGAGGAAGGAAAAATATTTATGTTATCGTTTTTGTCCGACCGGACATTTTTGTTTGTACAGAGTGGTGCATAATTACCCGGACTAAAGTTTGTACAAGCATAAAATTCGAATAAAGCGTTTTACTAGGTTCAAATTTGGATTGCAAAAATTCAAATAATTAATCAGTAAATTGACCAAATTTCAAGTTACATTTTTTTCAACTCGAATAATTGTGCGCCACCCTGGATTCACACCTCCACCCGACTTAACACAATCTCAAAAATCAAGAATAAATTAGTTCATTTTCATTCATATTATTATTAGTAGTTTTCGACATCAACCCGTAACATATATTAACACAGAGTACAGTACACATAATATACAGTGTTCACAAAAAACAATCAAATATTCAATCCATCCCTCCGAAGTGCTGCGATTTC</canonical>
            <polymorphic>TCATTTGGATGAATTTTTACGAAAAAGTTGTCAATTACAAAAATGAAGCTCAAAAACTTGAAAATGTTCTATCCGTCTACAGTAATCCCTTTTGATATGTACCGTAAACGCTCCAATAGAATGCCTCGCAAGCCATTGACTTTGAGACCATATATCTCATTTACTGTGACAAATATCAAAAAGTTGTAAACTGATAAAGTTTTTTTTCTGACTTTATGTTAAACATTTTATCCGTTTACCACTTTTTGATAACTCTCACAGGAAATGAGATATATAGATTCAAAGTTGGCGGCTTGGGTGGCCTTCTACATCTTTGTTATCATAAAATCAAAACATTTTACGACTTTTTGATACCTTTCCCAGGAATCGAGATACTTCGGCTCAGAGTTGAAATTTAGGGGGTAATAGAGTGTTAACTGTATGATAAGAGAAATCAAAAAATCAGAAGTTAAAATATTTTTTGCATGAATCATTCTATTTTTTTTTTGAATCATCCATTWAAAAAACTACTCCTATCACTGATAATCGAGAACCGTAGGAGGACGTCATAAATAGGAAATATGTAGTTTTGAAACAAACATGAGGAAGGAAAAATATTTATGTTATCGTTTTTGTCCGACCGGACATTTTTGTTTGTACAGAGTGGTGCATAATTACCCGGACTAAAGTTTGTACAAGCATAAAATTCGAATAAAGCGTTTTACTAGGTTCAAATTTGGATTGCAAAAATTCAAATAATTAATCAGTAAATTGACCAAATTTCAAGTTACATTTTTTTCAACTCGAATAATTGTGCGCCACCCTGGATTCACACCTCCACCCGACTTAACACAATCTCAAAAATCAAGAATAAATTAGTTCATTTTCATTCATATTATTATTAGTAGTTTTCGACATCAACCCGTAACATATATTAACACAGAGTACAGTACACATAATATACAGTGTTCACAAAAAACAATCAAATATTCAATCCATCCCTCCGAAGTGCTGCGATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>241 219 194 88 87 86 49 36</canonical_bands>
                <polymorphic_bands>290 219 194 88 87 86 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGGGGTAATAGAGTGTTAACTG</pcr_primer_p1>
		<pcr_primer_p2>ACTCTGTACAAACAAAAATGTCC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGGGGGTAATAGAGTGTTAACTGTATGATAAGAGAAATCAAAAAATCAGAAGTTAAAATATTTTTTGCATGAATCATTCTATTTTTTTTTTGAATCATCCATTAAAAAAACTACTCCTATCACTGATAATCGAGAACCGTAGGAGGACGTCATAAATAGGAAATATGTAGTTTTGAAACAAACATGAGGAAGGAAAAATATTTATGTTATCGTTTTTGTCCGACCGGACATTTTTGTTTGTACAGAGT</canonical_amplicon>
		<polymorphic_amplicon>AGGGGGTAATAGAGTGTTAACTGTATGATAAGAGAAATCAAAAAATCAGAAGTTAAAATATTTTTTGCATGAATCATTCTATTTTTTTTTTGAATCATCCATTWAAAAAACTACTCCTATCACTGATAATCGAGAACCGTAGGAGGACGTCATAAATAGGAAATATGTAGTTTTGAAACAAACATGAGGAAGGAAAAATATTTATGTTATCGTTTTTGTCCGACCGGACATTTTTGTTTGTACAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33039</snp_id>
        <super_contig>c007800845.Contig2</super_contig>
        <contig_pos>50779</contig_pos>
        <strand></strand>
        <context>gcataaaatt[C/T]gaataaagcg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAGAGTGGTGCATAATTACCCGGACTAAAGTTTGTACAAGCATAAAATT</left_flank>
        <right_flank>GAATAAAGCGTTTTACTAGGTTCAAATTTGGATTGCAAAAATTCAAATAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTGATAAAGTTTTTTTTCTGACTTTATGTTAAACATTTTATCCGTTTACCACTTTTTGATAACTCTCACAGGAAATGAGATATATAGATTCAAAGTTGGCGGCTTGGGTGGCCTTCTACATCTTTGTTATCATAAAATCAAAACATTTTACGACTTTTTGATACCTTTCCCAGGAATCGAGATACTTCGGCTCAGAGTTGAAATTTAGGGGGTAATAGAGTGTTAACTGTATGATAAGAGAAATCAAAAAATCAGAAGTTAAAATATTTTTTGCATGAATCATTCTATTTTTTTTTTGAATCATCCATTAAAAAAACTACTCCTATCACTGATAATCGAGAACCGTAGGAGGACGTCATAAATAGGAAATATGTAGTTTTGAAACAAACATGAGGAAGGAAAAATATTTATGTTATCGTTTTTGTCCGACCGGACATTTTTGTTTGTACAGAGTGGTGCATAATTACCCGGACTAAAGTTTGTACAAGCATAAAATTCGAATAAAGCGTTTTACTAGGTTCAAATTTGGATTGCAAAAATTCAAATAATTAATCAGTAAATTGACCAAATTTCAAGTTACATTTTTTTCAACTCGAATAATTGTGCGCCACCCTGGATTCACACCTCCACCCGACTTAACACAATCTCAAAAATCAAGAATAAATTAGTTCATTTTCATTCATATTATTATTAGTAGTTTTCGACATCAACCCGTAACATATATTAACACAGAGTACAGTACACATAATATACAGTGTTCACAAAAAACAATCAAATATTCAATCCATCCCTCCGAAGTGCTGCGATTTCGGCATCGGTGAGTCCGATGGGTTCCTCTTCCACTTCTGGAAACTTGACTTTCGTTTCTGTTAGCACACGATGATGCACACTCTTCTCACGTTGAAATCTTTCAAATCGGACGCGTCCATCCAATGATTCGGAATTCATCGTTCCAAACACTTTCACCCAAATTCCGTTGAATAAAAATGGGCGGGATC</canonical>
            <polymorphic>AACTGATAAAGTTTTTTTTCTGACTTTATGTTAAACATTTTATCCGTTTACCACTTTTTGATAACTCTCACAGGAAATGAGATATATAGATTCAAAGTTGGCGGCTTGGGTGGCCTTCTACATCTTTGTTATCATAAAATCAAAACATTTTACGACTTTTTGATACCTTTCCCAGGAATCGAGATACTTCGGCTCAGAGTTGAAATTTAGGGGGTAATAGAGTGTTAACTGTATGATAAGAGAAATCAAAAAATCAGAAGTTAAAATATTTTTTGCATGAATCATTCTATTTTTTTTTTGAATCATCCATTAAAAAAACTACTCCTATCACTGATAATCGAGAACCGTAGGAGGACGTCATAAATAGGAAATATGTAGTTTTGAAACAAACATGAGGAAGGAAAAATATTTATGTTATCGTTTTTGTCCGACCGGACATTTTTGTTTGTACAGAGTGGTGCATAATTACCCGGACTAAAGTTTGTACAAGCATAAAATTYGAATAAAGCGTTTTACTAGGTTCAAATTTGGATTGCAAAAATTCAAATAATTAATCAGTAAATTGACCAAATTTCAAGTTACATTTTTTTCAACTCGAATAATTGTGCGCCACCCTGGATTCACACCTCCACCCGACTTAACACAATCTCAAAAATCAAGAATAAATTAGTTCATTTTCATTCATATTATTATTAGTAGTTTTCGACATCAACCCGTAACATATATTAACACAGAGTACAGTACACATAATATACAGTGTTCACAAAAAACAATCAAATATTCAATCCATCCCTCCGAAGTGCTGCGATTTCGGCATCGGTGAGTCCGATGGGTTCCTCTTCCACTTCTGGAAACTTGACTTTCGTTTCTGTTAGCACACGATGATGCACACTCTTCTCACGTTGAAATCTTTCAAATCGGACGCGTCCATCCAATGATTCGGAATTCATCGTTCCAAACACTTTCACCCAAATTCCGTTGAATAAAAATGGGCGGGATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>374 292 203 30 29 29 28 15</canonical_bands>
                <polymorphic_bands>374 321 203 30 29 28 15</polymorphic_bands>
            </assay>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>296 180 161 159 108 96</canonical_bands>
                <polymorphic_bands>296 257 180 159 108</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGACATTTTTGTTTGTACAGAGT</pcr_primer_p1>
		<pcr_primer_p2>TTCTTGATTTTTGAGATTGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>GGACATTTTTGTTTGTACAGAGTGGTGCATAATTACCCGGACTAAAGTTTGTACAAGCATAAAATTCGAATAAAGCGTTTTACTAGGTTCAAATTTGGATTGCAAAAATTCAAATAATTAATCAGTAAATTGACCAAATTTCAAGTTACATTTTTTTCAACTCGAATAATTGTGCGCCACCCTGGATTCACACCTCCACCCGACTTAACACAATCTCAAAAATCAAGAA</canonical_amplicon>
		<polymorphic_amplicon>GGACATTTTTGTTTGTACAGAGTGGTGCATAATTACCCGGACTAAAGTTTGTACAAGCATAAAATTYGAATAAAGCGTTTTACTAGGTTCAAATTTGGATTGCAAAAATTCAAATAATTAATCAGTAAATTGACCAAATTTCAAGTTACATTTTTTTCAACTCGAATAATTGTGCGCCACCCTGGATTCACACCTCCACCCGACTTAACACAATCTCAAAAATCAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33040</snp_id>
        <super_contig>c007800845.Contig2</super_contig>
        <contig_pos>77566</contig_pos>
        <strand>+</strand>
        <context>CCCTACCTTG[A/G]TTTTTTTTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAGCGGTATTGCGGCCTACCGTAGCCGCTGTTGAATTTTCCCTACCTTG</left_flank>
        <right_flank>TTTTTTTTAAATTTTCCCACAGTTCTCCCAATTTTGAACGCTCTGAGGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATCGCTAGCATCTCTAGAATCTGTTTTTCATCGAAAAACCGAACTTAATTGCGAAAGCAGCTCGAACGAGCCAAAAGTCTGAAATATTACGTTTTTGCCGCACTTTTTCGTAGATCAAAAAAGCGACGCCTTTCAATTTCTCAGGTCCCACTTTTTTTTAATTCGGCACGCTCTTCCACAGAACATTTCCGAACTGCAAATTGATTTTTGATCTACAGAAAAAAGTTNNNNNNNNNNGGTAAGGAGTCGAACTGTCCCAAATTGGAACGCTGCCTGCAACAGCGCGCATGAAAGCACACACAAAACAGCATTGAATCTGTTCGATTTTAGGTCTGTTCGAATTTGAAAACGTTCGAATTCGTCGTACCCCCGGAGAGCGTGTTCGGCAATAAACGAGGCTCAAAAAAAATTTAAAGGCGCATGCAGTTGTTTATCCGAGTGCGTCTCGTAGCGGTATTGCGGCCTACCGTAGCCGCTGTTGAATTTTCCCTACCTTGTTTTTTTTTAAATTTTCCCACAGTTCTCCCAATTTTGAACGCTCTGAGGGCGCGTATGCAAAAATTTTTCAACGAATTTTTGTTTGAACATTCCTTAAGGAAATTTCTGATGGTCAGAAAATATTTGTGTGCTAAATAATTCTCATTTTTAGCCCAGCTATCACAAATACGCACTCAAAAATTTTAGGCTCATAAAACCATTTTCCAGACTCCGAAAAGTGGTTTTTTTCACTTTAGCATGCGGACTCAAATTTTTGTAGCGTAGCAATTACTTCTTTTTTCACCTTCGCTGCGTTTTTTCATGAGATACTTATTTAATTTTGTGCTTTGTTCACTTTTGTTGCACATCAGAAATATTACTTTCTTTCAATAGTTTCAGACACTCGACGTCGGAGATGCCCGCCACACCACTACCGCCGGCACCGATGCCTCCTGTAACAGCTCCACCCGGTCCCATGCCACCACCGCCACTTCCACCAGCCCCAGGTCCAGTTTTGCCCA</canonical>
            <polymorphic>TGATCGCTAGCATCTCTAGAATCTGTTTTTCATCGAAAAACCGAACTTAATTGCGAAAGCAGCTCGAACGAGCCAAAAGTCTGAAATATTACGTTTTTGCCGCACTTTTTCGTAGATCAAAAAAGCGACGCCTTTCAATTTCTCAGGTCCCACTTTTTTTTAATTCGGCACGCTCTTCCACAGAACATTTCCGAACTGCAAATTGATTTTTGATCTACAGAAAAAAGTTNNNNNNNNNNGGTAAGGAGTCGAACTGTCCCAAATTGGAACGCTGCCTGCAACAGCGCGCATGAAAGCACACACAAAACAGCATTGAATCTGTTCGATTTTAGGTCTGTTCGAATTTGAAAACGTTCGAATTCGTCGTACCCCCGGAGAGCGTGTTCGGCAATAAACGAGGCTCAAAAAAAATTTAAAGGCGCATGCAGTTGTTTATCCGAGTGCGTCTCGTAGCGGTATTGCGGCCTACCGTAGCCGCTGTTGAATTTTCCCTACCTTGRTTTTTTTTAAATTTTCCCACAGTTCTCCCAATTTTGAACGCTCTGAGGGCGCGTATGCAAAAATTTTTCAACGAATTTTTGTTTGAACATTCCTTAAGGAAATTTCTGATGGTCAGAAAATATTTGTGTGCTAAATAATTCTCATTTTTAGCCCAGCTATCACAAATACGCACTCAAAAATTTTAGGCTCATAAAACCATTTTCCAGACTCCGAAAAGTGGTTTTTTTCACTTTAGCATGCGGACTCAAATTTTTGTAGCGTAGCAATTACTTCTTTTTTCACCTTCGCTGCGTTTTTTCATGAGATACTTATTTAATTTTGTGCTTTGTTCACTTTTGTTGCACATCAGAAATATTACTTTCTTTCAATAGTTTCAGACACTCGACGTCGGAGATGCCCGCCACACCACTACCGCCGGCACCGATGCCTCCTGTAACAGCTCCACCCGGTCCCATGCCACCACCGCCACTTCCACCAGCCCCAGGTCCAGTTTTGCCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATAAACGAGGCTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTAAGGAATGTTCAAACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>210</pcr_amplicon_size>
		<canonical_amplicon>CAATAAACGAGGCTCAAAAAAAATTTAAAGGCGCATGCAGTTGTTTATCCGAGTGCGTCTCGTAGCGGTATTGCGGCCTACCGTAGCCGCTGTTGAATTTTCCCTACCTTGTTTTTTTTTAAATTTTCCCACAGTTCTCCCAATTTTGAACGCTCTGAGGGCGCGTATGCAAAAATTTTTCAACGAATTTTTGTTTGAACATTCCTTAAG</canonical_amplicon>
		<polymorphic_amplicon>CAATAAACGAGGCTCAAAAAAAATTTAAAGGCGCATGCAGTTGTTTATCCGAGTGCGTCTCGTAGCGGTATTGCGGCCTACCGTAGCCGCTGTTGAATTTTCCCTACCTTGRTTTTTTTTAAATTTTCCCACAGTTCTCCCAATTTTGAACGCTCTGAGGGCGCGTATGCAAAAATTTTTCAACGAATTTTTGTTTGAACATTCCTTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33041</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>13076</contig_pos>
        <strand>+</strand>
        <context>ATGCAGAAAT[A/C]GGAGAAGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTGGATAAGCAGCAGCTCCATAAGCATAAGCATATGGATATGCAGAAAT</left_flank>
        <right_flank>GGAGAAGAATAATAGTAAGGAGAGGATACAACTTCTGGAGTGTAGACGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTTTGCATTTTTCATGTACTATTTATTTCATTGCCACCTTTTTCTCCTTTCCAAAGCTTTTCGCAGATCTTTTCTCGTTGTATTGCTCCCAATTTGCCGCTAGTTTTTTTCTATTGCATGCCAAAAAGGTTTTCCGGTTTTTTGGAAATCAAAATTATTATGATATTTACTTGTTTACCTTTTCTTTAATCGTGATAAAAATGTTTACAATTCTAAAATTTTTTTTTCTAGCGATTTTTACAGAGTCTCAAAACAGCAACAATTTCAGTCAAACGTTTATTAAGTTGGTACTGTATACACATATGAATTGGATTGAAATCTCTCATTGATTATTGGTGAATTTCTGTGTTGGAGCAGCAGAAGGAGATGATTGCCCCTGAAAAAATGGAATTACTGAAGATCTTGATTTGAATATTACCTTATTGGATCCCCATCCATAGTAAGCAGTTGGATAAGCAGCAGCTCCATAAGCATAAGCATATGGATATGCAGAAATAGGAGAAGAATAATAGTAAGGAGAGGATACAACTTCTGGAGTGTAGACGATTTGCGATGAAGAAATACAGAAAAAAGCAACAGCCAAAACGATCAAACACTTTTGGAACATTTTTAGATTCTCGGAGAGACCTGGAAAGTGATTTGAGTAAGAAAAGTTAACATTTTTATACCAAAGATTTCTATTTGTATAGACTCCCTTGATTCAATAAACTTTACTCTTGACACCTTCTCGGCAAGGATTAAGAGATGTTTGCACATGATCTTTTTATAGATTACATTAATAAAAAGGCTAACATTCTTTTATAATTCACAGCAAAGGCGATAGAATTAGATTACGATTCAGCATAATTTTTCTAGAAGATCAGTCTCAAAAACTCATGAGACTACTGTAGTTCAATCGAGCAAATAGTGGAGTACGCAACATTTGAAACAAATAGAACACCCAATAACTGGTTATTTATCTTTAGCAACTTGCAAGCTGTTTGAACTTAAAAAAGAG</canonical>
            <polymorphic>GATTTTTGCATTTTTCATGTACTATTTATTTCATTGCCACCTTTTTCTCCTTTCCAAAGCTTTTCGCAGATCTTTTCTCGTTGTATTGCTCCCAATTTGCCGCTAGTTTTTTTCTATTGCATGCCAAAAAGGTTTTCCGGTTTTTTGGAAATCAAAATTATTATGATATTTACTTGTTTACCTTTTCTTTAATCGTGATAAAAATGTTTACAATTCTAAAATTTTTTTTTCTAGCGATTTTTACAGAGTCTCAAAACAGCAACAATTTCAGTCAAACGTTTATTAAGTTGGTACTGTATACACATATGAATTGGATTGAAATCTCTCATTGATTATTGGTGAATTTCTGTGTTGGAGCAGCAGAAGGAGATGATTGCCCCTGAAAAAATGGAATTACTGAAGATCTTGATTTGAATATTACCTTATTGGATCCCCATCCATAGTAAGCAGTTGGATAAGCAGCAGCTCCATAAGCATAAGCATATGGATATGCAGAAATMGGAGAAGAATAATAGTAAGGAGAGGATACAACTTCTGGAGTGTAGACGATTTGCGATGAAGAAATACAGAAAAAAGCAACAGCCAAAACGATCAAACACTTTTGGAACATTTTTAGATTCTCGGAGAGACCTGGAAAGTGATTTGAGTAAGAAAAGTTAACATTTTTATACCAAAGATTTCTATTTGTATAGACTCCCTTGATTCAATAAACTTTACTCTTGACACCTTCTCGGCAAGGATTAAGAGATGTTTGCACATGATCTTTTTATAGATTACATTAATAAAAAGGCTAACATTCTTTTATAATTCACAGCAAAGGCGATAGAATTAGATTACGATTCAGCATAATTTTTCTAGAAGATCAGTCTCAAAAACTCATGAGACTACTGTAGTTCAATCGAGCAAATAGTGGAGTACGCAACATTTGAAACAAATAGAACACCCAATAACTGGTTATTTATCTTTAGCAACTTGCAAGCTGTTTGAACTTAAAAAAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGAATTGGATTGAAATCTCTC</pcr_primer_p1>
		<pcr_primer_p2>CAAATCGTCTACACTCCAGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATGAATTGGATTGAAATCTCTCATTGATTATTGGTGAATTTCTGTGTTGGAGCAGCAGAAGGAGATGATTGCCCCTGAAAAAATGGAATTACTGAAGATCTTGATTTGAATATTACCTTATTGGATCCCCATCCATAGTAAGCAGTTGGATAAGCAGCAGCTCCATAAGCATAAGCATATGGATATGCAGAAATAGGAGAAGAATAATAGTAAGGAGAGGATACAACTTCTGGAGTGTAGACGATTTG</canonical_amplicon>
		<polymorphic_amplicon>TATGAATTGGATTGAAATCTCTCATTGATTATTGGTGAATTTCTGTGTTGGAGCAGCAGAAGGAGATGATTGCCCCTGAAAAAATGGAATTACTGAAGATCTTGATTTGAATATTACCTTATTGGATCCCCATCCATAGTAAGCAGTTGGATAAGCAGCAGCTCCATAAGCATAAGCATATGGATATGCAGAAATMGGAGAAGAATAATAGTAAGGAGAGGATACAACTTCTGGAGTGTAGACGATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33042</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>13934</contig_pos>
        <strand>+</strand>
        <context>TGACCAACAA[C/T]CAATGAGATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGGGACCATCATCTCCTTCTGCTGCTCCAACACAGAAATTGACCAACAA</left_flank>
        <right_flank>CAATGAGATGTCTGACTTTCCCGAATATGTGTATTATATGAAAAAACACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGATCAGTCTCAAAAACTCATGAGACTACTGTAGTTCAATCGAGCAAATAGTGGAGTACGCAACATTTGAAACAAATAGAACACCCAATAACTGGTTATTTATCTTTAGCAACTTGCAAGCTGTTTGAACTTAAAAAAGAGAAAGCACACAATGAGAATCTATATAAGTGGGAACTCTTCCAACTTCAAATCACTTTCCGAGTCTCTAATCTAAAAATGTTCCAAAAGTGTTTGATCGTTTTGGCTGTTGCTCTGTTCTGTATTTCTTCATCGCAAATCGTCTACACTCCAGAAGTTGTATCCTCTCCTTACTATTATTCTTCTCCGATTTCTGCATATCCATATGCTTATGCTTATGGAGCTGCTGCTTATCCAACTGCTTACTATGGATGGGGATCTAATAAGGTAATATTCAAATCAAGATCTCTAGAAACTATATTCTTTTTTCCAGGGACCATCATCTCCTTCTGCTGCTCCAACACAGAAATTGACCAACAATCAATGAGATGTCTGACTTTCCCGAATATGTGTATTATATGAAAAAACACACACAAACATCCAATAAATGTTTTCCATTTCAAATCTATTTTCGTAAGGCAGAGCATAATTTAGACTCTCATAATTAATGAAGGATGTTCAAAACATTTTTTCTCTGCTTTGAGCAACATTCATCAGTGTGACTTACTGCTGGCTACTACTTTCATACTACTTCAGACAACACATTTCAACCACTTGATGTTTCCATGGGTCCTTTTTTTGCCGAAATCAAATTCATATGTGTATTATACGATTCAAAAATACAATTTATAACTGGAGCTTTTGCCATAATAAGCACAGAAAAATACAAACGATTATTTCGGTGACTTGGCTGTAACTTCTTCCAGACTCTCATCTTTAAAATCTGCCATCTCCTGATCCAATAGCTTTTCGATCTTTTTGATTAATTCAGTTTGGTCTGTGCATAAATGAAGAACATCCGTGTCGAACTGTAATGAACTT</canonical>
            <polymorphic>AAGATCAGTCTCAAAAACTCATGAGACTACTGTAGTTCAATCGAGCAAATAGTGGAGTACGCAACATTTGAAACAAATAGAACACCCAATAACTGGTTATTTATCTTTAGCAACTTGCAAGCTGTTTGAACTTAAAAAAGAGAAAGCACACAATGAGAATCTATATAAGTGGGAACTCTTCCAACTTCAAATCACTTTCCGAGTCTCTAATCTAAAAATGTTCCAAAAGTGTTTGATCGTTTTGGCTGTTGCTCTGTTCTGTATTTCTTCATCGCAAATCGTCTACACTCCAGAAGTTGTATCCTCTCCTTACTATTATTCTTCTCCGATTTCTGCATATCCATATGCTTATGCTTATGGAGCTGCTGCTTATCCAACTGCTTACTATGGATGGGGATCTAATAAGGTAATATTCAAATCAAGATCTCTAGAAACTATATTCTTTTTTCCAGGGACCATCATCTCCTTCTGCTGCTCCAACACAGAAATTGACCAACAAYCAATGAGATGTCTGACTTTCCCGAATATGTGTATTATATGAAAAAACACACACAAACATCCAATAAATGTTTTCCATTTCAAATCTATTTTCGTAAGGCAGAGCATAATTTAGACTCTCATAATTAATGAAGGATGTTCAAAACATTTTTTCTCTGCTTTGAGCAACATTCATCAGTGTGACTTACTGCTGGCTACTACTTTCATACTACTTCAGACAACACATTTCAACCACTTGATGTTTCCATGGGTCCTTTTTTTGCCGAAATCAAATTCATATGTGTATTATACGATTCAAAAATACAATTTATAACTGGAGCTTTTGCCATAATAAGCACAGAAAAATACAAACGATTATTTCGGTGACTTGGCTGTAACTTCTTCCAGACTCTCATCTTTAAAATCTGCCATCTCCTGATCCAATAGCTTTTCGATCTTTTTGATTAATTCAGTTTGGTCTGTGCATAAATGAAGAACATCCGTGTCGAACTGTAATGAACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGCTTATCCAACTGCTTACTAT</pcr_primer_p1>
		<pcr_primer_p2>GTCTAAATTATGCTCTGCCTTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGCTTATCCAACTGCTTACTATGGATGGGGATCTAATAAGGTAATATTCAAATCAAGATCTCTAGAAACTATATTCTTTTTTCCAGGGACCATCATCTCCTTCTGCTGCTCCAACACAGAAATTGACCAACAATCAATGAGATGTCTGACTTTCCCGAATATGTGTATTATATGAAAAAACACACACAAACATCCAATAAATGTTTTCCATTTCAAATCTATTTTCGTAAGGCAGAGCATAATTTAGAC</canonical_amplicon>
		<polymorphic_amplicon>CTGCTTATCCAACTGCTTACTATGGATGGGGATCTAATAAGGTAATATTCAAATCAAGATCTCTAGAAACTATATTCTTTTTTCCAGGGACCATCATCTCCTTCTGCTGCTCCAACACAGAAATTGACCAACAAYCAATGAGATGTCTGACTTTCCCGAATATGTGTATTATATGAAAAAACACACACAAACATCCAATAAATGTTTTCCATTTCAAATCTATTTTCGTAAGGCAGAGCATAATTTAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33043</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>17220</contig_pos>
        <strand>-</strand>
        <context>GTTTCAAATG[C/T]AAAMCATTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAACATCGAAGATATCTTAACAAATGTGAGATAATACAATGTTTCAAATG</left_flank>
        <right_flank>AAAGCATTTATTGGGTGTGATTTTGTTTCATATAATACACATATTCAGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGTTAGCTGAAATAAGAGTTTAAGTAAACTTTATATATACACTCATCTACTAAGCAACTTTTATTTTTAGCGCATGAGATTGTACAGACAGTAGTGTTTGTGATATTCGTTTGAATGCATTGATTAGTTGAATTCACAGATCCTTGGAATAGCAACATCTGTGGTTTCTCCTAAACATCTGAATAGACTACACATAATAAAAATTTCCCGCACCTGCCCAACAACTAGATAAATACAGAAAGCGAAACAGAGAAAATTTACTAGAGACGGCATTTTTAAAACTGAAATGAAGTTCGGAGAGAAAGTGAATAGTGTTTTAGGCAAAAAGGGATCCATGGAAACATCAAGTAGTTGAATGTGTTGTCTGAAGTAGTACGAAAGTAGTAGTCAGCAGTAAATCACTCTGATGGATGTTGCTCAAAGCAGAAAGAGAAATCCACAGTGTTTCGAACATCGAAGATATCTTAACAAATGTGAGATAATACAATGTTTCAAATGGAAAGCATTTATTGGGTGTGATTTTGTTTCATATAATACACATATTCAGGAAAGTCAGACATCTCATTGATTGTTGGTCAATTTCTGTGTTGGAGCAGCAGAAGGAGATGATGGTCCCTGGAAAAAAGAATATAGTTTCTAGAGATCTTGATTTGAATATTACCTTATTAGATCCCCATCCATAGTAAGCAGTTGGATAAGCAGCAGCTCCATAAGCATAAGCATATGGATATGCAGAAATCGGAGAAGAATAATAGTAAGGAGAGGATACAACTTCTGGAGTGTAGACGATTTGCGATGAAGAAATACAGAAAAAAGCAACAGCCAAAACGATCAAACACTTTTGGAACATTTTTAGATTAGAGACTCGGAAAGTGATTTGAAGTTGGAAGAGTTCCCACTTATATAGATTCTCATTGTGTGCTTTCTCTTTTTTAAGTTCAAACAGCTTGCAAGTTGCTAAAGATAAATAACCAGTTATTGGGTGTTCTATTTGTTTCA</canonical>
            <polymorphic>CCGTTAGCTGAAATAAGAGTTTAAGTAAACTTTATATATACACTCATCTACTAAGCAACTTTTATTTTTAGCGCATGAGATTGTACAGACAGTAGTGTTTGTGATATTCGTTTGAATGCATTGATTAGTTGAATTCACAGATCCTTGGAATAGCAACATCTGTGGTTTCTCCTAAACATCTGAATAGACTACACATAATAAAAATTTCCCGCACCTGCCCAACAACTAGATAAATACAGAAAGCGAAACAGAGAAAATTTACTAGAGACGGCATTTTTAAAACTGAAATGAAGTTCGGAGAGAAAGTGAATAGTGTTTTAGGCAAAAAGGGATCCATGGAAACATCAAGTAGTTGAATGTGTTGTCTGAAGTAGTACGAAAGTAGTAGTCAGCAGTAAATCACTCTGATGGATGTTGCTCAAAGCAGAAAGAGAAATCCACAGTGTTTCGAACATCGAAGATATCTTAACAAATGTGAGATAATACAATGTTTCAAATGYAAAGCATTTATTGGGTGTGATTTTGTTTCATATAATACACATATTCAGGAAAGTCAGACATCTCATTGATTGTTGGTCAATTTCTGTGTTGGAGCAGCAGAAGGAGATGATGGTCCCTGGAAAAAAGAATATAGTTTCTAGAGATCTTGATTTGAATATTACCTTATTAGATCCCCATCCATAGTAAGCAGTTGGATAAGCAGCAGCTCCATAAGCATAAGCATATGGATATGCAGAAATCGGAGAAGAATAATAGTAAGGAGAGGATACAACTTCTGGAGTGTAGACGATTTGCGATGAAGAAATACAGAAAAAAGCAACAGCCAAAACGATCAAACACTTTTGGAACATTTTTAGATTAGAGACTCGGAAAGTGATTTGAAGTTGGAAGAGTTCCCACTTATATAGATTCTCATTGTGTGCTTTCTCTTTTTTAAGTTCAAACAGCTTGCAAGTTGCTAAAGATAAATAACCAGTTATTGGGTGTTCTATTTGTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCATGGAAACATCAAGTAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGACCAACAATCAATGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCCATGGAAACATCAAGTAGTTGAATGTGTTGTCTGAAGTAGTACGAAAGTAGTAGTCAGCAGTAAATCACTCTGATGGATGTTGCTCAAAGCAGAAAGAGAAATCCACAGTGTTTCGAACATCGAAGATATCTTAACAAATGTGAGATAATACAATGTTTCAAATGGAAAGCATTTATTGGGTGTGATTTTGTTTCATATAATACACATATTCAGGAAAGTCAGACATCTCATTGATTGTTGGTCAAT</canonical_amplicon>
		<polymorphic_amplicon>ATCCATGGAAACATCAAGTAGTTGAATGTGTTGTCTGAAGTAGTACGAAAGTAGTAGTCAGCAGTAAATCACTCTGATGGATGTTGCTCAAAGCAGAAAGAGAAATCCACAGTGTTTCGAACATCGAAGATATCTTAACAAATGTGAGATAATACAATGTTTCAAATGYAAAGCATTTATTGGGTGTGATTTTGTTTCATATAATACACATATTCAGGAAAGTCAGACATCTCATTGATTGTTGGTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33044</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>17224</contig_pos>
        <strand>-</strand>
        <context>CAAATGYAAA[A/C]CATTTATTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCGAAGATATCTTAACAAATGTGAGATAATACAATGTTTCAAATGGAAA</left_flank>
        <right_flank>CATTTATTGGGTGTGATTTTGTTTCATATAATACACATATTCAGGAAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGCTGAAATAAGAGTTTAAGTAAACTTTATATATACACTCATCTACTAAGCAACTTTTATTTTTAGCGCATGAGATTGTACAGACAGTAGTGTTTGTGATATTCGTTTGAATGCATTGATTAGTTGAATTCACAGATCCTTGGAATAGCAACATCTGTGGTTTCTCCTAAACATCTGAATAGACTACACATAATAAAAATTTCCCGCACCTGCCCAACAACTAGATAAATACAGAAAGCGAAACAGAGAAAATTTACTAGAGACGGCATTTTTAAAACTGAAATGAAGTTCGGAGAGAAAGTGAATAGTGTTTTAGGCAAAAAGGGATCCATGGAAACATCAAGTAGTTGAATGTGTTGTCTGAAGTAGTACGAAAGTAGTAGTCAGCAGTAAATCACTCTGATGGATGTTGCTCAAAGCAGAAAGAGAAATCCACAGTGTTTCGAACATCGAAGATATCTTAACAAATGTGAGATAATACAATGTTTCAAATGGAAAGCATTTATTGGGTGTGATTTTGTTTCATATAATACACATATTCAGGAAAGTCAGACATCTCATTGATTGTTGGTCAATTTCTGTGTTGGAGCAGCAGAAGGAGATGATGGTCCCTGGAAAAAAGAATATAGTTTCTAGAGATCTTGATTTGAATATTACCTTATTAGATCCCCATCCATAGTAAGCAGTTGGATAAGCAGCAGCTCCATAAGCATAAGCATATGGATATGCAGAAATCGGAGAAGAATAATAGTAAGGAGAGGATACAACTTCTGGAGTGTAGACGATTTGCGATGAAGAAATACAGAAAAAAGCAACAGCCAAAACGATCAAACACTTTTGGAACATTTTTAGATTAGAGACTCGGAAAGTGATTTGAAGTTGGAAGAGTTCCCACTTATATAGATTCTCATTGTGTGCTTTCTCTTTTTTAAGTTCAAACAGCTTGCAAGTTGCTAAAGATAAATAACCAGTTATTGGGTGTTCTATTTGTTTCAAATG</canonical>
            <polymorphic>TAGCTGAAATAAGAGTTTAAGTAAACTTTATATATACACTCATCTACTAAGCAACTTTTATTTTTAGCGCATGAGATTGTACAGACAGTAGTGTTTGTGATATTCGTTTGAATGCATTGATTAGTTGAATTCACAGATCCTTGGAATAGCAACATCTGTGGTTTCTCCTAAACATCTGAATAGACTACACATAATAAAAATTTCCCGCACCTGCCCAACAACTAGATAAATACAGAAAGCGAAACAGAGAAAATTTACTAGAGACGGCATTTTTAAAACTGAAATGAAGTTCGGAGAGAAAGTGAATAGTGTTTTAGGCAAAAAGGGATCCATGGAAACATCAAGTAGTTGAATGTGTTGTCTGAAGTAGTACGAAAGTAGTAGTCAGCAGTAAATCACTCTGATGGATGTTGCTCAAAGCAGAAAGAGAAATCCACAGTGTTTCGAACATCGAAGATATCTTAACAAATGTGAGATAATACAATGTTTCAAATGGAAAMCATTTATTGGGTGTGATTTTGTTTCATATAATACACATATTCAGGAAAGTCAGACATCTCATTGATTGTTGGTCAATTTCTGTGTTGGAGCAGCAGAAGGAGATGATGGTCCCTGGAAAAAAGAATATAGTTTCTAGAGATCTTGATTTGAATATTACCTTATTAGATCCCCATCCATAGTAAGCAGTTGGATAAGCAGCAGCTCCATAAGCATAAGCATATGGATATGCAGAAATCGGAGAAGAATAATAGTAAGGAGAGGATACAACTTCTGGAGTGTAGACGATTTGCGATGAAGAAATACAGAAAAAAGCAACAGCCAAAACGATCAAACACTTTTGGAACATTTTTAGATTAGAGACTCGGAAAGTGATTTGAAGTTGGAAGAGTTCCCACTTATATAGATTCTCATTGTGTGCTTTCTCTTTTTTAAGTTCAAACAGCTTGCAAGTTGCTAAAGATAAATAACCAGTTATTGGGTGTTCTATTTGTTTCAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCATGGAAACATCAAGTAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGACCAACAATCAATGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCCATGGAAACATCAAGTAGTTGAATGTGTTGTCTGAAGTAGTACGAAAGTAGTAGTCAGCAGTAAATCACTCTGATGGATGTTGCTCAAAGCAGAAAGAGAAATCCACAGTGTTTCGAACATCGAAGATATCTTAACAAATGTGAGATAATACAATGTTTCAAATGGAAAGCATTTATTGGGTGTGATTTTGTTTCATATAATACACATATTCAGGAAAGTCAGACATCTCATTGATTGTTGGTCAAT</canonical_amplicon>
		<polymorphic_amplicon>ATCCATGGAAACATCAAGTAGTTGAATGTGTTGTCTGAAGTAGTACGAAAGTAGTAGTCAGCAGTAAATCACTCTGATGGATGTTGCTCAAAGCAGAAAGAGAAATCCACAGTGTTTCGAACATCGAAGATATCTTAACAAATGTGAGATAATACAATGTTTCAAATGGAAAMCATTTATTGGGTGTGATTTTGTTTCATATAATACACATATTCAGGAAAGTCAGACATCTCATTGATTGTTGGTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33045</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>17241</contig_pos>
        <strand>-</strand>
        <context>TTGGGTGTGA[C/T]MTTMTTTCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATGTGAGATAATACAATGTTTCAAATGGAAAGCATTTATTGGGTGTGA</left_flank>
        <right_flank>TTTGTTTCATATAATACACATATTCAGGAAAGTCAGACATCTCATTGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGTAAACTTTATATATACACTCATCTACTAAGCAACTTTTATTTTTAGCGCATGAGATTGTACAGACAGTAGTGTTTGTGATATTCGTTTGAATGCATTGATTAGTTGAATTCACAGATCCTTGGAATAGCAACATCTGTGGTTTCTCCTAAACATCTGAATAGACTACACATAATAAAAATTTCCCGCACCTGCCCAACAACTAGATAAATACAGAAAGCGAAACAGAGAAAATTTACTAGAGACGGCATTTTTAAAACTGAAATGAAGTTCGGAGAGAAAGTGAATAGTGTTTTAGGCAAAAAGGGATCCATGGAAACATCAAGTAGTTGAATGTGTTGTCTGAAGTAGTACGAAAGTAGTAGTCAGCAGTAAATCACTCTGATGGATGTTGCTCAAAGCAGAAAGAGAAATCCACAGTGTTTCGAACATCGAAGATATCTTAACAAATGTGAGATAATACAATGTTTCAAATGGAAAGCATTTATTGGGTGTGATTTTGTTTCATATAATACACATATTCAGGAAAGTCAGACATCTCATTGATTGTTGGTCAATTTCTGTGTTGGAGCAGCAGAAGGAGATGATGGTCCCTGGAAAAAAGAATATAGTTTCTAGAGATCTTGATTTGAATATTACCTTATTAGATCCCCATCCATAGTAAGCAGTTGGATAAGCAGCAGCTCCATAAGCATAAGCATATGGATATGCAGAAATCGGAGAAGAATAATAGTAAGGAGAGGATACAACTTCTGGAGTGTAGACGATTTGCGATGAAGAAATACAGAAAAAAGCAACAGCCAAAACGATCAAACACTTTTGGAACATTTTTAGATTAGAGACTCGGAAAGTGATTTGAAGTTGGAAGAGTTCCCACTTATATAGATTCTCATTGTGTGCTTTCTCTTTTTTAAGTTCAAACAGCTTGCAAGTTGCTAAAGATAAATAACCAGTTATTGGGTGTTCTATTTGTTTCAAATGTTGCGTACTCCACTATT</canonical>
            <polymorphic>TAAGTAAACTTTATATATACACTCATCTACTAAGCAACTTTTATTTTTAGCGCATGAGATTGTACAGACAGTAGTGTTTGTGATATTCGTTTGAATGCATTGATTAGTTGAATTCACAGATCCTTGGAATAGCAACATCTGTGGTTTCTCCTAAACATCTGAATAGACTACACATAATAAAAATTTCCCGCACCTGCCCAACAACTAGATAAATACAGAAAGCGAAACAGAGAAAATTTACTAGAGACGGCATTTTTAAAACTGAAATGAAGTTCGGAGAGAAAGTGAATAGTGTTTTAGGCAAAAAGGGATCCATGGAAACATCAAGTAGTTGAATGTGTTGTCTGAAGTAGTACGAAAGTAGTAGTCAGCAGTAAATCACTCTGATGGATGTTGCTCAAAGCAGAAAGAGAAATCCACAGTGTTTCGAACATCGAAGATATCTTAACAAATGTGAGATAATACAATGTTTCAAATGGAAAGCATTTATTGGGTGTGAYTTTGTTTCATATAATACACATATTCAGGAAAGTCAGACATCTCATTGATTGTTGGTCAATTTCTGTGTTGGAGCAGCAGAAGGAGATGATGGTCCCTGGAAAAAAGAATATAGTTTCTAGAGATCTTGATTTGAATATTACCTTATTAGATCCCCATCCATAGTAAGCAGTTGGATAAGCAGCAGCTCCATAAGCATAAGCATATGGATATGCAGAAATCGGAGAAGAATAATAGTAAGGAGAGGATACAACTTCTGGAGTGTAGACGATTTGCGATGAAGAAATACAGAAAAAAGCAACAGCCAAAACGATCAAACACTTTTGGAACATTTTTAGATTAGAGACTCGGAAAGTGATTTGAAGTTGGAAGAGTTCCCACTTATATAGATTCTCATTGTGTGCTTTCTCTTTTTTAAGTTCAAACAGCTTGCAAGTTGCTAAAGATAAATAACCAGTTATTGGGTGTTCTATTTGTTTCAAATGTTGCGTACTCCACTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCATGGAAACATCAAGTAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGACCAACAATCAATGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCCATGGAAACATCAAGTAGTTGAATGTGTTGTCTGAAGTAGTACGAAAGTAGTAGTCAGCAGTAAATCACTCTGATGGATGTTGCTCAAAGCAGAAAGAGAAATCCACAGTGTTTCGAACATCGAAGATATCTTAACAAATGTGAGATAATACAATGTTTCAAATGGAAAGCATTTATTGGGTGTGATTTTGTTTCATATAATACACATATTCAGGAAAGTCAGACATCTCATTGATTGTTGGTCAAT</canonical_amplicon>
		<polymorphic_amplicon>ATCCATGGAAACATCAAGTAGTTGAATGTGTTGTCTGAAGTAGTACGAAAGTAGTAGTCAGCAGTAAATCACTCTGATGGATGTTGCTCAAAGCAGAAAGAGAAATCCACAGTGTTTCGAACATCGAAGATATCTTAACAAATGTGAGATAATACAATGTTTCAAATGGAAAGCATTTATTGGGTGTGAYTTTGTTTCATATAATACACATATTCAGGAAAGTCAGACATCTCATTGATTGTTGGTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33046</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>17242</contig_pos>
        <strand>-</strand>
        <context>TGGGTGTGAY[A/C]TTMTTTCATA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATGTGAGATAATACAATGTTTCAAATGGAAAGCATTTATTGGGTGTGAT</left_flank>
        <right_flank>TTGTTTCATATAATACACATATTCAGGAAAGTCAGACATCTCATTGATTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTAAACTTTATATATACACTCATCTACTAAGCAACTTTTATTTTTAGCGCATGAGATTGTACAGACAGTAGTGTTTGTGATATTCGTTTGAATGCATTGATTAGTTGAATTCACAGATCCTTGGAATAGCAACATCTGTGGTTTCTCCTAAACATCTGAATAGACTACACATAATAAAAATTTCCCGCACCTGCCCAACAACTAGATAAATACAGAAAGCGAAACAGAGAAAATTTACTAGAGACGGCATTTTTAAAACTGAAATGAAGTTCGGAGAGAAAGTGAATAGTGTTTTAGGCAAAAAGGGATCCATGGAAACATCAAGTAGTTGAATGTGTTGTCTGAAGTAGTACGAAAGTAGTAGTCAGCAGTAAATCACTCTGATGGATGTTGCTCAAAGCAGAAAGAGAAATCCACAGTGTTTCGAACATCGAAGATATCTTAACAAATGTGAGATAATACAATGTTTCAAATGGAAAGCATTTATTGGGTGTGATTTTGTTTCATATAATACACATATTCAGGAAAGTCAGACATCTCATTGATTGTTGGTCAATTTCTGTGTTGGAGCAGCAGAAGGAGATGATGGTCCCTGGAAAAAAGAATATAGTTTCTAGAGATCTTGATTTGAATATTACCTTATTAGATCCCCATCCATAGTAAGCAGTTGGATAAGCAGCAGCTCCATAAGCATAAGCATATGGATATGCAGAAATCGGAGAAGAATAATAGTAAGGAGAGGATACAACTTCTGGAGTGTAGACGATTTGCGATGAAGAAATACAGAAAAAAGCAACAGCCAAAACGATCAAACACTTTTGGAACATTTTTAGATTAGAGACTCGGAAAGTGATTTGAAGTTGGAAGAGTTCCCACTTATATAGATTCTCATTGTGTGCTTTCTCTTTTTTAAGTTCAAACAGCTTGCAAGTTGCTAAAGATAAATAACCAGTTATTGGGTGTTCTATTTGTTTCAAATGTTGCGTACTCCACTATTT</canonical>
            <polymorphic>AAGTAAACTTTATATATACACTCATCTACTAAGCAACTTTTATTTTTAGCGCATGAGATTGTACAGACAGTAGTGTTTGTGATATTCGTTTGAATGCATTGATTAGTTGAATTCACAGATCCTTGGAATAGCAACATCTGTGGTTTCTCCTAAACATCTGAATAGACTACACATAATAAAAATTTCCCGCACCTGCCCAACAACTAGATAAATACAGAAAGCGAAACAGAGAAAATTTACTAGAGACGGCATTTTTAAAACTGAAATGAAGTTCGGAGAGAAAGTGAATAGTGTTTTAGGCAAAAAGGGATCCATGGAAACATCAAGTAGTTGAATGTGTTGTCTGAAGTAGTACGAAAGTAGTAGTCAGCAGTAAATCACTCTGATGGATGTTGCTCAAAGCAGAAAGAGAAATCCACAGTGTTTCGAACATCGAAGATATCTTAACAAATGTGAGATAATACAATGTTTCAAATGGAAAGCATTTATTGGGTGTGATMTTGTTTCATATAATACACATATTCAGGAAAGTCAGACATCTCATTGATTGTTGGTCAATTTCTGTGTTGGAGCAGCAGAAGGAGATGATGGTCCCTGGAAAAAAGAATATAGTTTCTAGAGATCTTGATTTGAATATTACCTTATTAGATCCCCATCCATAGTAAGCAGTTGGATAAGCAGCAGCTCCATAAGCATAAGCATATGGATATGCAGAAATCGGAGAAGAATAATAGTAAGGAGAGGATACAACTTCTGGAGTGTAGACGATTTGCGATGAAGAAATACAGAAAAAAGCAACAGCCAAAACGATCAAACACTTTTGGAACATTTTTAGATTAGAGACTCGGAAAGTGATTTGAAGTTGGAAGAGTTCCCACTTATATAGATTCTCATTGTGTGCTTTCTCTTTTTTAAGTTCAAACAGCTTGCAAGTTGCTAAAGATAAATAACCAGTTATTGGGTGTTCTATTTGTTTCAAATGTTGCGTACTCCACTATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCATGGAAACATCAAGTAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGACCAACAATCAATGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCCATGGAAACATCAAGTAGTTGAATGTGTTGTCTGAAGTAGTACGAAAGTAGTAGTCAGCAGTAAATCACTCTGATGGATGTTGCTCAAAGCAGAAAGAGAAATCCACAGTGTTTCGAACATCGAAGATATCTTAACAAATGTGAGATAATACAATGTTTCAAATGGAAAGCATTTATTGGGTGTGATTTTGTTTCATATAATACACATATTCAGGAAAGTCAGACATCTCATTGATTGTTGGTCAAT</canonical_amplicon>
		<polymorphic_amplicon>ATCCATGGAAACATCAAGTAGTTGAATGTGTTGTCTGAAGTAGTACGAAAGTAGTAGTCAGCAGTAAATCACTCTGATGGATGTTGCTCAAAGCAGAAAGAGAAATCCACAGTGTTTCGAACATCGAAGATATCTTAACAAATGTGAGATAATACAATGTTTCAAATGGAAAGCATTTATTGGGTGTGATMTTGTTTCATATAATACACATATTCAGGAAAGTCAGACATCTCATTGATTGTTGGTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33047</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>17245</contig_pos>
        <strand>-</strand>
        <context>GTGTGAYMTT[A/C]TTTCATATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTGAGATAATACAATGTTTCAAATGGAAAGCATTTATTGGGTGTGATTTT</left_flank>
        <right_flank>TTTCATATAATACACATATTCAGGAAAGTCAGACATCTCATTGATTGTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAACTTTATATATACACTCATCTACTAAGCAACTTTTATTTTTAGCGCATGAGATTGTACAGACAGTAGTGTTTGTGATATTCGTTTGAATGCATTGATTAGTTGAATTCACAGATCCTTGGAATAGCAACATCTGTGGTTTCTCCTAAACATCTGAATAGACTACACATAATAAAAATTTCCCGCACCTGCCCAACAACTAGATAAATACAGAAAGCGAAACAGAGAAAATTTACTAGAGACGGCATTTTTAAAACTGAAATGAAGTTCGGAGAGAAAGTGAATAGTGTTTTAGGCAAAAAGGGATCCATGGAAACATCAAGTAGTTGAATGTGTTGTCTGAAGTAGTACGAAAGTAGTAGTCAGCAGTAAATCACTCTGATGGATGTTGCTCAAAGCAGAAAGAGAAATCCACAGTGTTTCGAACATCGAAGATATCTTAACAAATGTGAGATAATACAATGTTTCAAATGGAAAGCATTTATTGGGTGTGATTTTGTTTCATATAATACACATATTCAGGAAAGTCAGACATCTCATTGATTGTTGGTCAATTTCTGTGTTGGAGCAGCAGAAGGAGATGATGGTCCCTGGAAAAAAGAATATAGTTTCTAGAGATCTTGATTTGAATATTACCTTATTAGATCCCCATCCATAGTAAGCAGTTGGATAAGCAGCAGCTCCATAAGCATAAGCATATGGATATGCAGAAATCGGAGAAGAATAATAGTAAGGAGAGGATACAACTTCTGGAGTGTAGACGATTTGCGATGAAGAAATACAGAAAAAAGCAACAGCCAAAACGATCAAACACTTTTGGAACATTTTTAGATTAGAGACTCGGAAAGTGATTTGAAGTTGGAAGAGTTCCCACTTATATAGATTCTCATTGTGTGCTTTCTCTTTTTTAAGTTCAAACAGCTTGCAAGTTGCTAAAGATAAATAACCAGTTATTGGGTGTTCTATTTGTTTCAAATGTTGCGTACTCCACTATTTGCT</canonical>
            <polymorphic>TAAACTTTATATATACACTCATCTACTAAGCAACTTTTATTTTTAGCGCATGAGATTGTACAGACAGTAGTGTTTGTGATATTCGTTTGAATGCATTGATTAGTTGAATTCACAGATCCTTGGAATAGCAACATCTGTGGTTTCTCCTAAACATCTGAATAGACTACACATAATAAAAATTTCCCGCACCTGCCCAACAACTAGATAAATACAGAAAGCGAAACAGAGAAAATTTACTAGAGACGGCATTTTTAAAACTGAAATGAAGTTCGGAGAGAAAGTGAATAGTGTTTTAGGCAAAAAGGGATCCATGGAAACATCAAGTAGTTGAATGTGTTGTCTGAAGTAGTACGAAAGTAGTAGTCAGCAGTAAATCACTCTGATGGATGTTGCTCAAAGCAGAAAGAGAAATCCACAGTGTTTCGAACATCGAAGATATCTTAACAAATGTGAGATAATACAATGTTTCAAATGGAAAGCATTTATTGGGTGTGATTTTMTTTCATATAATACACATATTCAGGAAAGTCAGACATCTCATTGATTGTTGGTCAATTTCTGTGTTGGAGCAGCAGAAGGAGATGATGGTCCCTGGAAAAAAGAATATAGTTTCTAGAGATCTTGATTTGAATATTACCTTATTAGATCCCCATCCATAGTAAGCAGTTGGATAAGCAGCAGCTCCATAAGCATAAGCATATGGATATGCAGAAATCGGAGAAGAATAATAGTAAGGAGAGGATACAACTTCTGGAGTGTAGACGATTTGCGATGAAGAAATACAGAAAAAAGCAACAGCCAAAACGATCAAACACTTTTGGAACATTTTTAGATTAGAGACTCGGAAAGTGATTTGAAGTTGGAAGAGTTCCCACTTATATAGATTCTCATTGTGTGCTTTCTCTTTTTTAAGTTCAAACAGCTTGCAAGTTGCTAAAGATAAATAACCAGTTATTGGGTGTTCTATTTGTTTCAAATGTTGCGTACTCCACTATTTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCATGGAAACATCAAGTAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGACCAACAATCAATGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCCATGGAAACATCAAGTAGTTGAATGTGTTGTCTGAAGTAGTACGAAAGTAGTAGTCAGCAGTAAATCACTCTGATGGATGTTGCTCAAAGCAGAAAGAGAAATCCACAGTGTTTCGAACATCGAAGATATCTTAACAAATGTGAGATAATACAATGTTTCAAATGGAAAGCATTTATTGGGTGTGATTTTGTTTCATATAATACACATATTCAGGAAAGTCAGACATCTCATTGATTGTTGGTCAAT</canonical_amplicon>
		<polymorphic_amplicon>ATCCATGGAAACATCAAGTAGTTGAATGTGTTGTCTGAAGTAGTACGAAAGTAGTAGTCAGCAGTAAATCACTCTGATGGATGTTGCTCAAAGCAGAAAGAGAAATCCACAGTGTTTCGAACATCGAAGATATCTTAACAAATGTGAGATAATACAATGTTTCAAATGGAAAGCATTTATTGGGTGTGATTTTMTTTCATATAATACACATATTCAGGAAAGTCAGACATCTCATTGATTGTTGGTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33048</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>18133</contig_pos>
        <strand>+</strand>
        <context>TCCTTACTAT[A/T]ATYCTTCTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTCATCGCAAGTCGTCTACACTCCAGAAGTTGTATCCTCTCCTTACTAT</left_flank>
        <right_flank>ATCCTTCTCCTATTTCTGCATATCCATATGCTTATGCTTATGGAGCTGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTGTGTGCTTTCTCTTTTTTAAGTTCAAACAGCTTGCAAGTTGCTAAAGATAAATAACCAGTTATTGGGTGTTCTATTTGTTTCAAATGTTGCGTACTCCACTATTTGCTCGATTAAACTACAGTAGTCTCATGAGTTTTTGATACTGATCTTCTGGAGAGATTATTATAGCTTGAAAGCTAATTTCGTCGCCTTGTCTCTAGATCCTGAAATCATGTAAATGGTTATAAATGTAATCTATAAAAAGATCATGCGCAAACTTTCCTTAATCCTTGCCGAAAAGGTGGTAAGAGTAAAGTTTATTGAATCAAGAGGTTGTTCAAATAGAAAATCTTGGTATAATTATGGGAACTCTTCTAACTTCAAATCACTTTCCAGGTCTCTCCGAGAATCTAAAAATGTTCCAAAAGTGTTTGATCGTTTTGGCTGTAGCTCTTTTCTGTATTTCTTCATCGCAAGTCGTCTACACTCCAGAAGTTGTATCCTCTCCTTACTATTATCCTTCTCCTATTTCTGCATATCCATATGCTTATGCTTATGGAGCTGCTGCTTATCCAACTGCTTACTATGGATGGGGATCTAATAAGGTAATATTCAAATCAAGATCTCTAGAAACTATATTCTTTTTTCCAGGGACCATCATCTCCTTCTGCTGCTCCAACACAGAAATTGACCAACAACCAATGAGATGTCTGACTTTCCCGAATATGTGTATTATATGAAAAAACACACACCCAATAAATGATTTTCATCTCACAAGGGAAAGTTTTTCAGACAACGGTTGAGAATTTGCCCGAAATTCGTACAAAGGTACTTTCGAACATGCTGAATCCGAATCCAAAAAATTTTTAGCCTGTTCTCGAAAGGAGCGGAAATATGGCCTCTGAAAGTGCTTTCAGTACTAAATTTTGGCCAAAAACATGCATTTTTCGAGGTTAAAAATTAGTTTTTCAGGATTTGCTTGAGTGCAAAACTCATTTTTGGACATTTTTCTATCT</canonical>
            <polymorphic>CATTGTGTGCTTTCTCTTTTTTAAGTTCAAACAGCTTGCAAGTTGCTAAAGATAAATAACCAGTTATTGGGTGTTCTATTTGTTTCAAATGTTGCGTACTCCACTATTTGCTCGATTAAACTACAGTAGTCTCATGAGTTTTTGATACTGATCTTCTGGAGAGATTATTATAGCTTGAAAGCTAATTTCGTCGCCTTGTCTCTAGATCCTGAAATCATGTAAATGGTTATAAATGTAATCTATAAAAAGATCATGCGCAAACTTTCCTTAATCCTTGCCGAAAAGGTGGTAAGAGTAAAGTTTATTGAATCAAGAGGTTGTTCAAATAGAAAATCTTGGTATAATTATGGGAACTCTTCTAACTTCAAATCACTTTCCAGGTCTCTCCGAGAATCTAAAAATGTTCCAAAAGTGTTTGATCGTTTTGGCTGTAGCTCTTTTCTGTATTTCTTCATCGCAAGTCGTCTACACTCCAGAAGTTGTATCCTCTCCTTACTATWATCCTTCTCCTATTTCTGCATATCCATATGCTTATGCTTATGGAGCTGCTGCTTATCCAACTGCTTACTATGGATGGGGATCTAATAAGGTAATATTCAAATCAAGATCTCTAGAAACTATATTCTTTTTTCCAGGGACCATCATCTCCTTCTGCTGCTCCAACACAGAAATTGACCAACAACCAATGAGATGTCTGACTTTCCCGAATATGTGTATTATATGAAAAAACACACACCCAATAAATGATTTTCATCTCACAAGGGAAAGTTTTTCAGACAACGGTTGAGAATTTGCCCGAAATTCGTACAAAGGTACTTTCGAACATGCTGAATCCGAATCCAAAAAATTTTTAGCCTGTTCTCGAAAGGAGCGGAAATATGGCCTCTGAAAGTGCTTTCAGTACTAAATTTTGGCCAAAAACATGCATTTTTCGAGGTTAAAAATTAGTTTTTCAGGATTTGCTTGAGTGCAAAACTCATTTTTGGACATTTTTCTATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTATAATTATGGGAACTCTTCT</pcr_primer_p1>
		<pcr_primer_p2>ATTAGATCCCCATCCATAGTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGTATAATTATGGGAACTCTTCTAACTTCAAATCACTTTCCAGGTCTCTCCGAGAATCTAAAAATGTTCCAAAAGTGTTTGATCGTTTTGGCTGTAGCTCTTTTCTGTATTTCTTCATCGCAAGTCGTCTACACTCCAGAAGTTGTATCCTCTCCTTACTATTATCCTTCTCCTATTTCTGCATATCCATATGCTTATGCTTATGGAGCTGCTGCTTATCCAACTGCTTACTATGGATGGGGATCTAAT</canonical_amplicon>
		<polymorphic_amplicon>TGGTATAATTATGGGAACTCTTCTAACTTCAAATCACTTTCCAGGTCTCTCCGAGAATCTAAAAATGTTCCAAAAGTGTTTGATCGTTTTGGCTGTAGCTCTTTTCTGTATTTCTTCATCGCAAGTCGTCTACACTCCAGAAGTTGTATCCTCTCCTTACTATWATCCTTCTCCTATTTCTGCATATCCATATGCTTATGCTTATGGAGCTGCTGCTTATCCAACTGCTTACTATGGATGGGGATCTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33049</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>18136</contig_pos>
        <strand>+</strand>
        <context>TTACTATWAT[C/T]CTTCTCCTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATCGCAAGTCGTCTACACTCCAGAAGTTGTATCCTCTCCTTACTATTAT</left_flank>
        <right_flank>CTTCTCCTATTTCTGCATATCCATATGCTTATGCTTATGGAGCTGCTGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGTGCTTTCTCTTTTTTAAGTTCAAACAGCTTGCAAGTTGCTAAAGATAAATAACCAGTTATTGGGTGTTCTATTTGTTTCAAATGTTGCGTACTCCACTATTTGCTCGATTAAACTACAGTAGTCTCATGAGTTTTTGATACTGATCTTCTGGAGAGATTATTATAGCTTGAAAGCTAATTTCGTCGCCTTGTCTCTAGATCCTGAAATCATGTAAATGGTTATAAATGTAATCTATAAAAAGATCATGCGCAAACTTTCCTTAATCCTTGCCGAAAAGGTGGTAAGAGTAAAGTTTATTGAATCAAGAGGTTGTTCAAATAGAAAATCTTGGTATAATTATGGGAACTCTTCTAACTTCAAATCACTTTCCAGGTCTCTCCGAGAATCTAAAAATGTTCCAAAAGTGTTTGATCGTTTTGGCTGTAGCTCTTTTCTGTATTTCTTCATCGCAAGTCGTCTACACTCCAGAAGTTGTATCCTCTCCTTACTATTATCCTTCTCCTATTTCTGCATATCCATATGCTTATGCTTATGGAGCTGCTGCTTATCCAACTGCTTACTATGGATGGGGATCTAATAAGGTAATATTCAAATCAAGATCTCTAGAAACTATATTCTTTTTTCCAGGGACCATCATCTCCTTCTGCTGCTCCAACACAGAAATTGACCAACAACCAATGAGATGTCTGACTTTCCCGAATATGTGTATTATATGAAAAAACACACACCCAATAAATGATTTTCATCTCACAAGGGAAAGTTTTTCAGACAACGGTTGAGAATTTGCCCGAAATTCGTACAAAGGTACTTTCGAACATGCTGAATCCGAATCCAAAAAATTTTTAGCCTGTTCTCGAAAGGAGCGGAAATATGGCCTCTGAAAGTGCTTTCAGTACTAAATTTTGGCCAAAAACATGCATTTTTCGAGGTTAAAAATTAGTTTTTCAGGATTTGCTTGAGTGCAAAACTCATTTTTGGACATTTTTCTATCTTCT</canonical>
            <polymorphic>TGTGTGCTTTCTCTTTTTTAAGTTCAAACAGCTTGCAAGTTGCTAAAGATAAATAACCAGTTATTGGGTGTTCTATTTGTTTCAAATGTTGCGTACTCCACTATTTGCTCGATTAAACTACAGTAGTCTCATGAGTTTTTGATACTGATCTTCTGGAGAGATTATTATAGCTTGAAAGCTAATTTCGTCGCCTTGTCTCTAGATCCTGAAATCATGTAAATGGTTATAAATGTAATCTATAAAAAGATCATGCGCAAACTTTCCTTAATCCTTGCCGAAAAGGTGGTAAGAGTAAAGTTTATTGAATCAAGAGGTTGTTCAAATAGAAAATCTTGGTATAATTATGGGAACTCTTCTAACTTCAAATCACTTTCCAGGTCTCTCCGAGAATCTAAAAATGTTCCAAAAGTGTTTGATCGTTTTGGCTGTAGCTCTTTTCTGTATTTCTTCATCGCAAGTCGTCTACACTCCAGAAGTTGTATCCTCTCCTTACTATTATYCTTCTCCTATTTCTGCATATCCATATGCTTATGCTTATGGAGCTGCTGCTTATCCAACTGCTTACTATGGATGGGGATCTAATAAGGTAATATTCAAATCAAGATCTCTAGAAACTATATTCTTTTTTCCAGGGACCATCATCTCCTTCTGCTGCTCCAACACAGAAATTGACCAACAACCAATGAGATGTCTGACTTTCCCGAATATGTGTATTATATGAAAAAACACACACCCAATAAATGATTTTCATCTCACAAGGGAAAGTTTTTCAGACAACGGTTGAGAATTTGCCCGAAATTCGTACAAAGGTACTTTCGAACATGCTGAATCCGAATCCAAAAAATTTTTAGCCTGTTCTCGAAAGGAGCGGAAATATGGCCTCTGAAAGTGCTTTCAGTACTAAATTTTGGCCAAAAACATGCATTTTTCGAGGTTAAAAATTAGTTTTTCAGGATTTGCTTGAGTGCAAAACTCATTTTTGGACATTTTTCTATCTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTATAATTATGGGAACTCTTCT</pcr_primer_p1>
		<pcr_primer_p2>ATTAGATCCCCATCCATAGTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGTATAATTATGGGAACTCTTCTAACTTCAAATCACTTTCCAGGTCTCTCCGAGAATCTAAAAATGTTCCAAAAGTGTTTGATCGTTTTGGCTGTAGCTCTTTTCTGTATTTCTTCATCGCAAGTCGTCTACACTCCAGAAGTTGTATCCTCTCCTTACTATTATCCTTCTCCTATTTCTGCATATCCATATGCTTATGCTTATGGAGCTGCTGCTTATCCAACTGCTTACTATGGATGGGGATCTAAT</canonical_amplicon>
		<polymorphic_amplicon>TGGTATAATTATGGGAACTCTTCTAACTTCAAATCACTTTCCAGGTCTCTCCGAGAATCTAAAAATGTTCCAAAAGTGTTTGATCGTTTTGGCTGTAGCTCTTTTCTGTATTTCTTCATCGCAAGTCGTCTACACTCCAGAAGTTGTATCCTCTCCTTACTATTATYCTTCTCCTATTTCTGCATATCCATATGCTTATGCTTATGGAGCTGCTGCTTATCCAACTGCTTACTATGGATGGGGATCTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33050</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>59428</contig_pos>
        <strand>+</strand>
        <context>TACTAGATCT[A/G]TCAATAACTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTCACTAAAAGACAAAAGAAGTGAGTATCAGATTTTTTATACTAGATCT</left_flank>
        <right_flank>TCAATAACTATTCTAACTTTCAGCTTTGCCTACATCGAGTTCGAATCGTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAGACGAGGTGAAGGAGGATATGGGCACACCTGGACGTAGCCTGAGCGTAGATCCATTCATTCGTTCATTCATTCTCATTCGATCCCTCGTCTCGAACGGTCGTCTACCTTTCTCTCTTTCGTTTTAACTTTTACAGTCTTCTTTCGTTTCACACCCCAACTTATTGCAGAGAAAAAATCCCCACATTTATCAGCAATGGCTCACAACAACTGTAACTCCATGGATATGGAAATTGAAGCTGAAGCTGCCGTTCTTCGAGACATTCAGAACAAAATGGCTGAAAAGATGGCTGCCAAGACGGTTCCACAAACTGCGGAAGAGCAAAAGGAGATCGACGCCAGATCGGTGTTCGTCGGAAATGTTGACTTCGGATCAACGATTGCAGAGATTCAAGATCACTTCAAAGGATGTGGCGTGATCGTTAGAACCACTATCCCAAAGGATAAGTTCACTAAAAGACAAAAGAAGTGAGTATCAGATTTTTTATACTAGATCTGTCAATAACTATTCTAACTTTCAGCTTTGCCTACATCGAGTTCGAATCGTCTGAAAGCATTGAAAATGCTCTGGTTATGAACGGCTCTCTGTTCCGAGCTCGTCAAATCGTCGTCACCGCCAAACGGACCAATGTACCAGGAATGGGAGCACCAAGAGGAGGTCGAGGTGGAGCCACGAGAGGTGGTATCCGTGGAGGTCGTGGAGGACAACAAACCGTCGTCGTAAAGTACGTTTATGTCAATGGAACAGCTCCAAGAGGACGTGGAGGGTTCAGAGGACGATTCAATCCGTATTAACTCTTCAAAGGTTCACTTCTTCTATCTCGTAATCAGTATTTTTAATACTCTTTTTTTCACCAGATGTCTCCATTACTTTCGTGCTCTAATTTTACTGATACTCATTACTGCCTCCTTCTAACCTGTTTGAAATTTAATAAAATCATAATAACTGCAATAATTTTTAATTCTATTTCCAAAGCTTTATAAATGAAAAAGTATAG</canonical>
            <polymorphic>ACAAGACGAGGTGAAGGAGGATATGGGCACACCTGGACGTAGCCTGAGCGTAGATCCATTCATTCGTTCATTCATTCTCATTCGATCCCTCGTCTCGAACGGTCGTCTACCTTTCTCTCTTTCGTTTTAACTTTTACAGTCTTCTTTCGTTTCACACCCCAACTTATTGCAGAGAAAAAATCCCCACATTTATCAGCAATGGCTCACAACAACTGTAACTCCATGGATATGGAAATTGAAGCTGAAGCTGCCGTTCTTCGAGACATTCAGAACAAAATGGCTGAAAAGATGGCTGCCAAGACGGTTCCACAAACTGCGGAAGAGCAAAAGGAGATCGACGCCAGATCGGTGTTCGTCGGAAATGTTGACTTCGGATCAACGATTGCAGAGATTCAAGATCACTTCAAAGGATGTGGCGTGATCGTTAGAACCACTATCCCAAAGGATAAGTTCACTAAAAGACAAAAGAAGTGAGTATCAGATTTTTTATACTAGATCTRTCAATAACTATTCTAACTTTCAGCTTTGCCTACATCGAGTTCGAATCGTCTGAAAGCATTGAAAATGCTCTGGTTATGAACGGCTCTCTGTTCCGAGCTCGTCAAATCGTCGTCACCGCCAAACGGACCAATGTACCAGGAATGGGAGCACCAAGAGGAGGTCGAGGTGGAGCCACGAGAGGTGGTATCCGTGGAGGTCGTGGAGGACAACAAACCGTCGTCGTAAAGTACGTTTATGTCAATGGAACAGCTCCAAGAGGACGTGGAGGGTTCAGAGGACGATTCAATCCGTATTAACTCTTCAAAGGTTCACTTCTTCTATCTCGTAATCAGTATTTTTAATACTCTTTTTTTCACCAGATGTCTCCATTACTTTCGTGCTCTAATTTTACTGATACTCATTACTGCCTCCTTCTAACCTGTTTGAAATTTAATAAAATCATAATAACTGCAATAATTTTTAATTCTATTTCCAAAGCTTTATAAATGAAAAAGTATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCAACGATTGCAGAGATT</pcr_primer_p1>
		<pcr_primer_p2>GAACAGAGAGCCGTTCATAA</pcr_primer_p2>
		<pcr_amplicon_size>220</pcr_amplicon_size>
		<canonical_amplicon>GATCAACGATTGCAGAGATTCAAGATCACTTCAAAGGATGTGGCGTGATCGTTAGAACCACTATCCCAAAGGATAAGTTCACTAAAAGACAAAAGAAGTGAGTATCAGATTTTTTATACTAGATCTGTCAATAACTATTCTAACTTTCAGCTTTGCCTACATCGAGTTCGAATCGTCTGAAAGCATTGAAAATGCTCTGGTTATGAACGGCTCTCTGTTC</canonical_amplicon>
		<polymorphic_amplicon>GATCAACGATTGCAGAGATTCAAGATCACTTCAAAGGATGTGGCGTGATCGTTAGAACCACTATCCCAAAGGATAAGTTCACTAAAAGACAAAAGAAGTGAGTATCAGATTTTTTATACTAGATCTRTCAATAACTATTCTAACTTTCAGCTTTGCCTACATCGAGTTCGAATCGTCTGAAAGCATTGAAAATGCTCTGGTTATGAACGGCTCTCTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33051</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>59531</contig_pos>
        <strand>+</strand>
        <context>CCGAGCTCGT[C/T]AAATCGTCGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGCATTGAAAATGCTCTGGTTATGAACGGCTCTCTGTTCCGAGCTCGT</left_flank>
        <right_flank>AAATCGTCGTCACCGCCAAACGGACCAATGTACCAGGAATGGGAGCACCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTCTACCTTTCTCTCTTTCGTTTTAACTTTTACAGTCTTCTTTCGTTTCACACCCCAACTTATTGCAGAGAAAAAATCCCCACATTTATCAGCAATGGCTCACAACAACTGTAACTCCATGGATATGGAAATTGAAGCTGAAGCTGCCGTTCTTCGAGACATTCAGAACAAAATGGCTGAAAAGATGGCTGCCAAGACGGTTCCACAAACTGCGGAAGAGCAAAAGGAGATCGACGCCAGATCGGTGTTCGTCGGAAATGTTGACTTCGGATCAACGATTGCAGAGATTCAAGATCACTTCAAAGGATGTGGCGTGATCGTTAGAACCACTATCCCAAAGGATAAGTTCACTAAAAGACAAAAGAAGTGAGTATCAGATTTTTTATACTAGATCTGTCAATAACTATTCTAACTTTCAGCTTTGCCTACATCGAGTTCGAATCGTCTGAAAGCATTGAAAATGCTCTGGTTATGAACGGCTCTCTGTTCCGAGCTCGTCAAATCGTCGTCACCGCCAAACGGACCAATGTACCAGGAATGGGAGCACCAAGAGGAGGTCGAGGTGGAGCCACGAGAGGTGGTATCCGTGGAGGTCGTGGAGGACAACAAACCGTCGTCGTAAAGTACGTTTATGTCAATGGAACAGCTCCAAGAGGACGTGGAGGGTTCAGAGGACGATTCAATCCGTATTAACTCTTCAAAGGTTCACTTCTTCTATCTCGTAATCAGTATTTTTAATACTCTTTTTTTCACCAGATGTCTCCATTACTTTCGTGCTCTAATTTTACTGATACTCATTACTGCCTCCTTCTAACCTGTTTGAAATTTAATAAAATCATAATAACTGCAATAATTTTTAATTCTATTTCCAAAGCTTTATAAATGAAAAAGTATAGAAAAGAGCTCTCTCAAACATCCGACTTGTGCTCTTCAGCAGCCGATGGTGTATTTGAAATTGGAGTTGGCGTCGCTGAGCCATTTGCTGGGGTAACAGATCCA</canonical>
            <polymorphic>CGTCTACCTTTCTCTCTTTCGTTTTAACTTTTACAGTCTTCTTTCGTTTCACACCCCAACTTATTGCAGAGAAAAAATCCCCACATTTATCAGCAATGGCTCACAACAACTGTAACTCCATGGATATGGAAATTGAAGCTGAAGCTGCCGTTCTTCGAGACATTCAGAACAAAATGGCTGAAAAGATGGCTGCCAAGACGGTTCCACAAACTGCGGAAGAGCAAAAGGAGATCGACGCCAGATCGGTGTTCGTCGGAAATGTTGACTTCGGATCAACGATTGCAGAGATTCAAGATCACTTCAAAGGATGTGGCGTGATCGTTAGAACCACTATCCCAAAGGATAAGTTCACTAAAAGACAAAAGAAGTGAGTATCAGATTTTTTATACTAGATCTGTCAATAACTATTCTAACTTTCAGCTTTGCCTACATCGAGTTCGAATCGTCTGAAAGCATTGAAAATGCTCTGGTTATGAACGGCTCTCTGTTCCGAGCTCGTYAAATCGTCGTCACCGCCAAACGGACCAATGTACCAGGAATGGGAGCACCAAGAGGAGGTCGAGGTGGAGCCACGAGAGGTGGTATCCGTGGAGGTCGTGGAGGACAACAAACCGTCGTCGTAAAGTACGTTTATGTCAATGGAACAGCTCCAAGAGGACGTGGAGGGTTCAGAGGACGATTCAATCCGTATTAACTCTTCAAAGGTTCACTTCTTCTATCTCGTAATCAGTATTTTTAATACTCTTTTTTTCACCAGATGTCTCCATTACTTTCGTGCTCTAATTTTACTGATACTCATTACTGCCTCCTTCTAACCTGTTTGAAATTTAATAAAATCATAATAACTGCAATAATTTTTAATTCTATTTCCAAAGCTTTATAAATGAAAAAGTATAGAAAAGAGCTCTCTCAAACATCCGACTTGTGCTCTTCAGCAGCCGATGGTGTATTTGAAATTGGAGTTGGCGTCGCTGAGCCATTTGCTGGGGTAACAGATCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAACTTTCAGCTTTGCCTAC</pcr_primer_p1>
		<pcr_primer_p2>CTGTTCCATTGACATAAACGTA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TCTAACTTTCAGCTTTGCCTACATCGAGTTCGAATCGTCTGAAAGCATTGAAAATGCTCTGGTTATGAACGGCTCTCTGTTCCGAGCTCGTCAAATCGTCGTCACCGCCAAACGGACCAATGTACCAGGAATGGGAGCACCAAGAGGAGGTCGAGGTGGAGCCACGAGAGGTGGTATCCGTGGAGGTCGTGGAGGACAACAAACCGTCGTCGTAAAGTACGTTTATGTCAATGGAACAG</canonical_amplicon>
		<polymorphic_amplicon>TCTAACTTTCAGCTTTGCCTACATCGAGTTCGAATCGTCTGAAAGCATTGAAAATGCTCTGGTTATGAACGGCTCTCTGTTCCGAGCTCGTYAAATCGTCGTCACCGCCAAACGGACCAATGTACCAGGAATGGGAGCACCAAGAGGAGGTCGAGGTGGAGCCACGAGAGGTGGTATCCGTGGAGGTCGTGGAGGACAACAAACCGTCGTCGTAAAGTACGTTTATGTCAATGGAACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33052</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>105202</contig_pos>
        <strand>+</strand>
        <context>CAGGAACTAG[A/T]TTTTTTTGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAGTAACAAGAAGTGGTCTGGAAGAAAAACTTATGTGGACAGGAACTAG</left_flank>
        <right_flank>TTTTTTTGTGTGGGAAAAAAGAGTTATGAGCAATCAGTTGTTGCATTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGATATTGAGCATTGATGGCTGCGAATAGAATTGACAAACAAGTAACAATTGATAATACTCCTCGCCGGGTTTTCATTCTGAAAAATTTGAATTTTGGATTCAAATTGGATTCTGAATTACAATAAGAAATTAGCATATTGATTACGAAATGTAAAAGAAGGATGACCTCGAAAAAAGGTGTAAGGAAATGAATGAATATCATAATTTCGTTTGAATCTTCATATCTCGTTCGAAAAATCTTTTTGAACGATAGGAACCAAATGGTAGATAGCGGCAAAAAAGACAGATAGGAGGGCGAAAAAACGAAATTAATGGGTTTGACACAATTTCAACACAAAGATATTAGAGAAAGGTAAGTACACACGTAATAATGTCTTCGAGACATAGAGAGAGCCAGAAAGGGGTGAAATGGATACCCGAGGAGGTAAATATTGAGATGATGGGGGTGAGTAACAAGAAGTGGTCTGGAAGAAAAACTTATGTGGACAGGAACTAGTTTTTTTTGTGTGGGAAAAAAGAGTTATGAGCAATCAGTTGTTGCATTATTCAAGATTTCATAATTCAGGAATATAAAAGAAAACGTTGAAAAAACAAAACTTCTGAATTTCGAAGTTGATCTTAAAGTCGGTCTTACCAAACGTTTCTGTTTCAGATAATCTACAGCAGTTGCACCTCAATACTTTATTTAGTTCGCGGAAAAGACGATGTTCAACCCTAACCGGTAAAAATTTTATTTGAAAAATTGTGCAAATTTCTATTAAAATAACAAAAGCACAGTTGCTTCTTCAGATATACAAAATTCAAGTGGAAGATTTTGTCTCTCGGTAAATGCCGACATATTTCCATTGTGTACATGTGTGAGGGATGAGAGGAAAACATGAAGGAGGCGCATTTATGAATTGAATCGACACGATAAAATACTAATTGGCTCCATGTCAAAGGGCAAGTGGGAGAAATCTTCAGAAAGGAGGATGAAGAGAAGAAATGAAACAATGGA</canonical>
            <polymorphic>TCTGATATTGAGCATTGATGGCTGCGAATAGAATTGACAAACAAGTAACAATTGATAATACTCCTCGCCGGGTTTTCATTCTGAAAAATTTGAATTTTGGATTCAAATTGGATTCTGAATTACAATAAGAAATTAGCATATTGATTACGAAATGTAAAAGAAGGATGACCTCGAAAAAAGGTGTAAGGAAATGAATGAATATCATAATTTCGTTTGAATCTTCATATCTCGTTCGAAAAATCTTTTTGAACGATAGGAACCAAATGGTAGATAGCGGCAAAAAAGACAGATAGGAGGGCGAAAAAACGAAATTAATGGGTTTGACACAATTTCAACACAAAGATATTAGAGAAAGGTAAGTACACACGTAATAATGTCTTCGAGACATAGAGAGAGCCAGAAAGGGGTGAAATGGATACCCGAGGAGGTAAATATTGAGATGATGGGGGTGAGTAACAAGAAGTGGTCTGGAAGAAAAACTTATGTGGACAGGAACTAGWTTTTTTTGTGTGGGAAAAAAGAGTTATGAGCAATCAGTTGTTGCATTATTCAAGATTTCATAATTCAGGAATATAAAAGAAAACGTTGAAAAAACAAAACTTCTGAATTTCGAAGTTGATCTTAAAGTCGGTCTTACCAAACGTTTCTGTTTCAGATAATCTACAGCAGTTGCACCTCAATACTTTATTTAGTTCGCGGAAAAGACGATGTTCAACCCTAACCGGTAAAAATTTTATTTGAAAAATTGTGCAAATTTCTATTAAAATAACAAAAGCACAGTTGCTTCTTCAGATATACAAAATTCAAGTGGAAGATTTTGTCTCTCGGTAAATGCCGACATATTTCCATTGTGTACATGTGTGAGGGATGAGAGGAAAACATGAAGGAGGCGCATTTATGAATTGAATCGACACGATAAAATACTAATTGGCTCCATGTCAAAGGGCAAGTGGGAGAAATCTTCAGAAAGGAGGATGAAGAGAAGAAATGAAACAATGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACTAGT</site>
                <isoschizomers>
                    <enzyme>AhlI</enzyme>
                    <enzyme>BcuI</enzyme>
                    <enzyme>SpeI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACATAGAGAGAGCCAGAAAG</pcr_primer_p1>
		<pcr_primer_p2>AGACCGACTTTAAGATCAACTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGACATAGAGAGAGCCAGAAAGGGGTGAAATGGATACCCGAGGAGGTAAATATTGAGATGATGGGGGTGAGTAACAAGAAGTGGTCTGGAAGAAAAACTTATGTGGACAGGAACTAGTTTTTTTTGTGTGGGAAAAAAGAGTTATGAGCAATCAGTTGTTGCATTATTCAAGATTTCATAATTCAGGAATATAAAAGAAAACGTTGAAAAAACAAAACTTCTGAATTTCGAAGTTGATCTTAAAGTCGGTCT</canonical_amplicon>
		<polymorphic_amplicon>AGACATAGAGAGAGCCAGAAAGGGGTGAAATGGATACCCGAGGAGGTAAATATTGAGATGATGGGGGTGAGTAACAAGAAGTGGTCTGGAAGAAAAACTTATGTGGACAGGAACTAGWTTTTTTTGTGTGGGAAAAAAGAGTTATGAGCAATCAGTTGTTGCATTATTCAAGATTTCATAATTCAGGAATATAAAAGAAAACGTTGAAAAAACAAAACTTCTGAATTTCGAAGTTGATCTTAAAGTCGGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33053</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>119026</contig_pos>
        <strand>+</strand>
        <context>CATCCATGTA[A/G]AGATGACAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGGTGTCGAACATTCCAGAGTCTTGAATTTCTTGTTGAGCATCCATGTA</left_flank>
        <right_flank>AGATGACAGGCTTGTGAGACGTCGTCGTTGGTGAAAGAGGATTTCTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCACTTTTGTTTCAATTTTTTAGAACAGTTACCGTCTCTTCAGTAAGCAAGTCAGCCTGCCATCATCAAGTGTTCCGCGGGAAACAACTTGAAATTTCAAGTTAAAAAAAGCTAAACTTCATTTTTTATAATCACATTCACAAAAAAAATCACTTGGTCATGTATTTAGAGCAGTCAGCACTATTTTTGGTTGTTCTTATGAATGGACAACTGGTATCCGGACAATTCAATGGAATAGTGGGATCCGAAAGATTGACGACAGTGTTCTTGGATCCTACTGGTTGCACAATATTGTTCCACAAATGTTTGGCCACATTGGCATGTCCAAGTTTCGAAAAATGGAAACAATCCGGAGCGAACCAATCCAAATTCACTTCTCCATCTGGCTTCAATGGAGGAATTGTGATTCCATTGAAGAATGGTTGAAGGACAAATGTGAAATCGTCGGTGGTGTCGAACATTCCAGAGTCTTGAATTTCTTGTTGAGCATCCATGTAGAGATGACAGGCTTGTGAGACGTCGTCGTTGGTGAAAGAGGATTTCTTTTCACATGGGCACTCGAAGACGTGGAGACCATCACAGAAGTATTTGTCATGGTCGATCTGGCGGAGCATTCTCATATCAAACATTCCCGTCATCGAGACGATTGACCTGAAAGGTTTTCGGTATTGTTTTCAACAATCGTGTTATTAGCAGAATGAAAAAAAACCTTCCATCTACACGTTAAATTTTGGTTTTTTTTGAACGCCATTATTCTGGAATGAGAAACATACAATTTTTTTTCAAAAATGAAACTTGAGTTACTCAAGTCCACTGCCTTGTGTAGTGCATTATTTCAGTATACCTCGGCAAATTATCCTTCAAAATCTGAATTGCAGTAATCACACTTTGCTTCCAGTTTGCTTTCGAATGAACTCCCTGTAATCAAAAATCGCAACTTTTATTTTGCTCTCTCCTCCAAATTTACATTTTCCTTCTCCTCGCAATACCGACACATG</canonical>
            <polymorphic>TTTCACTTTTGTTTCAATTTTTTAGAACAGTTACCGTCTCTTCAGTAAGCAAGTCAGCCTGCCATCATCAAGTGTTCCGCGGGAAACAACTTGAAATTTCAAGTTAAAAAAAGCTAAACTTCATTTTTTATAATCACATTCACAAAAAAAATCACTTGGTCATGTATTTAGAGCAGTCAGCACTATTTTTGGTTGTTCTTATGAATGGACAACTGGTATCCGGACAATTCAATGGAATAGTGGGATCCGAAAGATTGACGACAGTGTTCTTGGATCCTACTGGTTGCACAATATTGTTCCACAAATGTTTGGCCACATTGGCATGTCCAAGTTTCGAAAAATGGAAACAATCCGGAGCGAACCAATCCAAATTCACTTCTCCATCTGGCTTCAATGGAGGAATTGTGATTCCATTGAAGAATGGTTGAAGGACAAATGTGAAATCGTCGGTGGTGTCGAACATTCCAGAGTCTTGAATTTCTTGTTGAGCATCCATGTARAGATGACAGGCTTGTGAGACGTCGTCGTTGGTGAAAGAGGATTTCTTTTCACATGGGCACTCGAAGACGTGGAGACCATCACAGAAGTATTTGTCATGGTCGATCTGGCGGAGCATTCTCATATCAAACATTCCCGTCATCGAGACGATTGACCTGAAAGGTTTTCGGTATTGTTTTCAACAATCGTGTTATTAGCAGAATGAAAAAAAACCTTCCATCTACACGTTAAATTTTGGTTTTTTTTGAACGCCATTATTCTGGAATGAGAAACATACAATTTTTTTTCAAAAATGAAACTTGAGTTACTCAAGTCCACTGCCTTGTGTAGTGCATTATTTCAGTATACCTCGGCAAATTATCCTTCAAAATCTGAATTGCAGTAATCACACTTTGCTTCCAGTTTGCTTTCGAATGAACTCCCTGTAATCAAAAATCGCAACTTTTATTTTGCTCTCTCCTCCAAATTTACATTTTCCTTCTCCTCGCAATACCGACACATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCAATCCAAATTCACTTCT</pcr_primer_p1>
		<pcr_primer_p2>CAGATCGACCATGACAAATAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AACCAATCCAAATTCACTTCTCCATCTGGCTTCAATGGAGGAATTGTGATTCCATTGAAGAATGGTTGAAGGACAAATGTGAAATCGTCGGTGGTGTCGAACATTCCAGAGTCTTGAATTTCTTGTTGAGCATCCATGTAGAGATGACAGGCTTGTGAGACGTCGTCGTTGGTGAAAGAGGATTTCTTTTCACATGGGCACTCGAAGACGTGGAGACCATCACAGAAGTATTTGTCATGGTCGATCTG</canonical_amplicon>
		<polymorphic_amplicon>AACCAATCCAAATTCACTTCTCCATCTGGCTTCAATGGAGGAATTGTGATTCCATTGAAGAATGGTTGAAGGACAAATGTGAAATCGTCGGTGGTGTCGAACATTCCAGAGTCTTGAATTTCTTGTTGAGCATCCATGTARAGATGACAGGCTTGTGAGACGTCGTCGTTGGTGAAAGAGGATTTCTTTTCACATGGGCACTCGAAGACGTGGAGACCATCACAGAAGTATTTGTCATGGTCGATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33054</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>120154</contig_pos>
        <strand>+</strand>
        <context>AAGACGATGT[G/T]GCGAGTAGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CACTGCCATCCTGGGTATCCTAAATCTGGGAGAGAAGCCAAAGACGATGT</left_flank>
        <right_flank>GCGAGTAGTGTCCAAACGAGTAAACAAGAAACCGCCATCTCTGCAGCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGAGCTCTAGCTTGTGTGATGATATCAGCAGCCTGGGCTCCTGGAACAGCTTGGTTCAGTTTTGAGACTTCCCACACGTTGGCACTTCCAATCCCTGTGGAGTATCCCATAATGTTTGGGCTGAACTTCTTCATGACATCTGAAGTATAGGATTTCAAGGACCACTAGGTATTAGAATTAATTACTAGCAACTGTCACATGTTCATCCAACGATGAGTCTCCTCCACACTGAAATGCGAGTCCTCTGTATTGAAGAATCACAGCTAATGGATCTCCTTTTGGAGCTCCTGCTCCATTAGCAGCAGTCAAGGAGTCACCAAGAGCTGCGATGATTTTGATATCGGGAAACCGAACGGAATGAGCAGAAGTTGGTACTTTCTGACTCCTAAAACTTCCTTTATTCTTGATTCAAGGTTACATACCTACTTCTGATAGAGTGAAGCATCACACTGCCATCCTGGGTATCCTAAATCTGGGAGAGAAGCCAAAGACGATGTTGCGAGTAGTGTCCAAACGAGTAAACAAGAAACCGCCATCTCTGCAGCTGACAAGGGAGATGTGACTGATTTTCCCGAGTTCTCTCTTATCACCACGAGGGTAGGACATAATGGAATTCGACAAAGAGCAAACTATAAAGTTGCCTTTATTCTACCTAACAAAATTTGCTCAATTCACTTGAATCACTAAATCGAATATAATTTTTTTTGTATCAACACCTCAATAAAACAGTATTTTTATTTCTAAATTTGTTTGCCAAAAGTGAAATAAAAAAGAACATAGGAATACCCGTTGTGTCATCAAATCAACAAGCAGTGAATTCTGAGAAATTCGAAAAAATCTAACAATGAAAAGACAAAAAGGGCATTTTGTGTCTCCAGAATGACGGATGTCCCTTCATATTCCAACCGAGGACTGGGAGAGAATGTGGGTCAGATGTGAAGACGTCTTCTTGAGATAACGTAGAATCAGAATGCAAATCCACGTCACCGTCGCATTGA</canonical>
            <polymorphic>CGAGAGCTCTAGCTTGTGTGATGATATCAGCAGCCTGGGCTCCTGGAACAGCTTGGTTCAGTTTTGAGACTTCCCACACGTTGGCACTTCCAATCCCTGTGGAGTATCCCATAATGTTTGGGCTGAACTTCTTCATGACATCTGAAGTATAGGATTTCAAGGACCACTAGGTATTAGAATTAATTACTAGCAACTGTCACATGTTCATCCAACGATGAGTCTCCTCCACACTGAAATGCGAGTCCTCTGTATTGAAGAATCACAGCTAATGGATCTCCTTTTGGAGCTCCTGCTCCATTAGCAGCAGTCAAGGAGTCACCAAGAGCTGCGATGATTTTGATATCGGGAAACCGAACGGAATGAGCAGAAGTTGGTACTTTCTGACTCCTAAAACTTCCTTTATTCTTGATTCAAGGTTACATACCTACTTCTGATAGAGTGAAGCATCACACTGCCATCCTGGGTATCCTAAATCTGGGAGAGAAGCCAAAGACGATGTKGCGAGTAGTGTCCAAACGAGTAAACAAGAAACCGCCATCTCTGCAGCTGACAAGGGAGATGTGACTGATTTTCCCGAGTTCTCTCTTATCACCACGAGGGTAGGACATAATGGAATTCGACAAAGAGCAAACTATAAAGTTGCCTTTATTCTACCTAACAAAATTTGCTCAATTCACTTGAATCACTAAATCGAATATAATTTTTTTTGTATCAACACCTCAATAAAACAGTATTTTTATTTCTAAATTTGTTTGCCAAAAGTGAAATAAAAAAGAACATAGGAATACCCGTTGTGTCATCAAATCAACAAGCAGTGAATTCTGAGAAATTCGAAAAAATCTAACAATGAAAAGACAAAAAGGGCATTTTGTGTCTCCAGAATGACGGATGTCCCTTCATATTCCAACCGAGGACTGGGAGAGAATGTGGGTCAGATGTGAAGACGTCTTCTTGAGATAACGTAGAATCAGAATGCAAATCCACGTCACCGTCGCATTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTACTTTCTGACTCCTAAAA</pcr_primer_p1>
		<pcr_primer_p2>GTCGAATTCCATTATGTCCTAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTGGTACTTTCTGACTCCTAAAACTTCCTTTATTCTTGATTCAAGGTTACATACCTACTTCTGATAGAGTGAAGCATCACACTGCCATCCTGGGTATCCTAAATCTGGGAGAGAAGCCAAAGACGATGTTGCGAGTAGTGTCCAAACGAGTAAACAAGAAACCGCCATCTCTGCAGCTGACAAGGGAGATGTGACTGATTTTCCCGAGTTCTCTCTTATCACCACGAGGGTAGGACATAATGGAATTCGAC</canonical_amplicon>
		<polymorphic_amplicon>TTGGTACTTTCTGACTCCTAAAACTTCCTTTATTCTTGATTCAAGGTTACATACCTACTTCTGATAGAGTGAAGCATCACACTGCCATCCTGGGTATCCTAAATCTGGGAGAGAAGCCAAAGACGATGTKGCGAGTAGTGTCCAAACGAGTAAACAAGAAACCGCCATCTCTGCAGCTGACAAGGGAGATGTGACTGATTTTCCCGAGTTCTCTCTTATCACCACGAGGGTAGGACATAATGGAATTCGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33055</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>158959</contig_pos>
        <strand>+</strand>
        <context>TCAAATGATA[A/T]TCCATTATTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACTGTTTTGTTGGGTATCGTGGCTGGAGCGATGCCAAAATCAAATGATA</left_flank>
        <right_flank>TCCATTATTGGGTTATTATATTCTTGTGGTTATTGTACTTTGTGCAGTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGAGTGAAGCCTTCTTCAAATGATCCATTTTTTATAGAACCAGAGTAACGAAAATGTGAGTTTGACCCAATTTTTTGTTTCCCTTTTTCAACATTTTTTTCAACTCAATTTTTGTTATTTCTTATTTTTCCATTTTTCAGCATGATTTATTAACATTTTTGCATGATTACAATGTTATTATCCTTTAGATCGTTGAGTATTTTTTCCCAAAAACGCATTCTCTGCATTACTGATTTCAATTTTTATCATTACTGTCACTGCTTATATTTGATTTTTTCAAAATTTCCATTTTTCAACTTTCAACCAAGTTCATGCTCACTAGAAGCTCGTTAACTTTAGAGCCTAGCTTTTTCGCTCGGGATCCAAATTGGCAAAATATAGTTTCATATATTTTTAATTTGTTTATAATTCCAGGTATCTCTCGGTCTGGGAAGTCTTCTCGCGATGACTGTTTTGTTGGGTATCGTGGCTGGAGCGATGCCAAAATCAAATGATATTCCATTATTGGGTTATTATATTCTTGTGGTTATTGTACTTTGTGCAGTAGCCGTGGGAATATCAATGGCCTTTTTGGCAGTTAGCAGACATTATATTCAGAAAGGTAAGTGTTAAAAAATGATAAGGGTTTTGCTCTAATGGAAGCCCACCAAAACCTTCATCTTCGAGCTCAATTTTCTCGGTTCCTATGAAAGATATTAAAAATCTGTCAATTGATAAAGTATTAAAGATTTTATGTTGGATAATTTATCCGTTGAACATTTTTTGATATCTTTTGAAGGAATCGAGATGATTAAGCTCAAAGCTCATGTTTAGGGTGAGCTTCTATGTAACATAATGGAGCTGATCTTCCATTATGTTACAGTTTTAAAATATAGCAGTGGTAAATTTCGGACAGTTTTTTTTTTCAATGACCTTGTCTTCCAAAATTTCTTCAGTCATTGTTGTAAGACTACTGACACTGATAACCTAGGCATCTTTCTGAGGTCACCATCTTTAA</canonical>
            <polymorphic>AAAAGAGTGAAGCCTTCTTCAAATGATCCATTTTTTATAGAACCAGAGTAACGAAAATGTGAGTTTGACCCAATTTTTTGTTTCCCTTTTTCAACATTTTTTTCAACTCAATTTTTGTTATTTCTTATTTTTCCATTTTTCAGCATGATTTATTAACATTTTTGCATGATTACAATGTTATTATCCTTTAGATCGTTGAGTATTTTTTCCCAAAAACGCATTCTCTGCATTACTGATTTCAATTTTTATCATTACTGTCACTGCTTATATTTGATTTTTTCAAAATTTCCATTTTTCAACTTTCAACCAAGTTCATGCTCACTAGAAGCTCGTTAACTTTAGAGCCTAGCTTTTTCGCTCGGGATCCAAATTGGCAAAATATAGTTTCATATATTTTTAATTTGTTTATAATTCCAGGTATCTCTCGGTCTGGGAAGTCTTCTCGCGATGACTGTTTTGTTGGGTATCGTGGCTGGAGCGATGCCAAAATCAAATGATAWTCCATTATTGGGTTATTATATTCTTGTGGTTATTGTACTTTGTGCAGTAGCCGTGGGAATATCAATGGCCTTTTTGGCAGTTAGCAGACATTATATTCAGAAAGGTAAGTGTTAAAAAATGATAAGGGTTTTGCTCTAATGGAAGCCCACCAAAACCTTCATCTTCGAGCTCAATTTTCTCGGTTCCTATGAAAGATATTAAAAATCTGTCAATTGATAAAGTATTAAAGATTTTATGTTGGATAATTTATCCGTTGAACATTTTTTGATATCTTTTGAAGGAATCGAGATGATTAAGCTCAAAGCTCATGTTTAGGGTGAGCTTCTATGTAACATAATGGAGCTGATCTTCCATTATGTTACAGTTTTAAAATATAGCAGTGGTAAATTTCGGACAGTTTTTTTTTTCAATGACCTTGTCTTCCAAAATTTCTTCAGTCATTGTTGTAAGACTACTGACACTGATAACCTAGGCATCTTTCTGAGGTCACCATCTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCCAAATTGGCAAAATATAG</pcr_primer_p1>
		<pcr_primer_p2>CCTTTCTGAATATAATGTCTGCTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GATCCAAATTGGCAAAATATAGTTTCATATATTTTTAATTTGTTTATAATTCCAGGTATCTCTCGGTCTGGGAAGTCTTCTCGCGATGACTGTTTTGTTGGGTATCGTGGCTGGAGCGATGCCAAAATCAAATGATATTCCATTATTGGGTTATTATATTCTTGTGGTTATTGTACTTTGTGCAGTAGCCGTGGGAATATCAATGGCCTTTTTGGCAGTTAGCAGACATTATATTCAGAAAGG</canonical_amplicon>
		<polymorphic_amplicon>GATCCAAATTGGCAAAATATAGTTTCATATATTTTTAATTTGTTTATAATTCCAGGTATCTCTCGGTCTGGGAAGTCTTCTCGCGATGACTGTTTTGTTGGGTATCGTGGCTGGAGCGATGCCAAAATCAAATGATAWTCCATTATTGGGTTATTATATTCTTGTGGTTATTGTACTTTGTGCAGTAGCCGTGGGAATATCAATGGCCTTTTTGGCAGTTAGCAGACATTATATTCAGAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33056</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>172293</contig_pos>
        <strand>+</strand>
        <context>ACACAAAAAA[A/G]TGTGTGGGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTATCCCGCCGTTATCAGTGTGAGCGGTAGGATGAAGCAACACAAAAAA</left_flank>
        <right_flank>TGTGTGGGGATTTTTGGAAAAGTAAATTGAAACAGTAAATAAGAGGAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTAGTTGGCAAATTTTTTCTAGCTACTGTTGTTTTTGAGATATGCGCCTTTAAAAATATAATACCTCGATAATTGAATTTTACACATTTCTCTAGTAGATCTTTTAAGTACACTGTTGTTTATTTTTTGCAGTTGTCTATTAGTACAGTAATCCTTTGCAGAAGGGTATTTCCCAGTTTTGCAACAGAGCATCTTCCTCCACTTGACACTTATATCAATTTCAAAACAGACAAATACAACAATGCACAAGACACAAAAAAGAGCAGGATCACTTACCTCAACGCCTTCTCGTTGTCCATTTTTTTGCAACGGTTTTTCGAGGTGGCAAGACTGAAGGAGCGTGCACGGGAGATCAACTCTCTTCTCGGCGTCTCCAACCTCATCATGTTATCTCGGTCCATTGGAAAAGTGGGCGGAGTCTTGAATGAAAGAAGGGACAAGTATTTGTTTTATCCCGCCGTTATCAGTGTGAGCGGTAGGATGAAGCAACACAAAAAAGTGTGTGGGGATTTTTGGAAAAGTAAATTGAAACAGTAAATAAGAGGAAGAGACCCAGGAGGATCTCAATTACTGAAACGCAATGATAGGTCAATATGATCGGCGGATAAAAACGATTCTTTGAGAGCTAAATTTAGATTTCAGGAAATGAAAAAAAAGAGGTTATAACAGAAAAGAAACAACGGGAATTCTTGGCATTCATCCCGCCAAAAACACTTCGAAACACCACACTTTTTTCTCGTGTTTGTCGGTACTTTTGAGGGGTGAAAACAAGAAAATAAAGAGAGAAAAAAGAAAGAGCAAAGAATGGTACTTGGGGATGAGCATGTGGTAAAGTAAGTATAGTTTGAAACAGTGAAATTAAAGATGGTGTACGGTGAAGTTTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAATTCCTTCATCGAGAAAAATGAATCGAAAAATACGCTGAAAGCCCTTAG</canonical>
            <polymorphic>TCTAGTTGGCAAATTTTTTCTAGCTACTGTTGTTTTTGAGATATGCGCCTTTAAAAATATAATACCTCGATAATTGAATTTTACACATTTCTCTAGTAGATCTTTTAAGTACACTGTTGTTTATTTTTTGCAGTTGTCTATTAGTACAGTAATCCTTTGCAGAAGGGTATTTCCCAGTTTTGCAACAGAGCATCTTCCTCCACTTGACACTTATATCAATTTCAAAACAGACAAATACAACAATGCACAAGACACAAAAAAGAGCAGGATCACTTACCTCAACGCCTTCTCGTTGTCCATTTTTTTGCAACGGTTTTTCGAGGTGGCAAGACTGAAGGAGCGTGCACGGGAGATCAACTCTCTTCTCGGCGTCTCCAACCTCATCATGTTATCTCGGTCCATTGGAAAAGTGGGCGGAGTCTTGAATGAAAGAAGGGACAAGTATTTGTTTTATCCCGCCGTTATCAGTGTGAGCGGTAGGATGAAGCAACACAAAAAARTGTGTGGGGATTTTTGGAAAAGTAAATTGAAACAGTAAATAAGAGGAAGAGACCCAGGAGGATCTCAATTACTGAAACGCAATGATAGGTCAATATGATCGGCGGATAAAAACGATTCTTTGAGAGCTAAATTTAGATTTCAGGAAATGAAAAAAAAGAGGTTATAACAGAAAAGAAACAACGGGAATTCTTGGCATTCATCCCGCCAAAAACACTTCGAAACACCACACTTTTTTCTCGTGTTTGTCGGTACTTTTGAGGGGTGAAAACAAGAAAATAAAGAGAGAAAAAAGAAAGAGCAAAGAATGGTACTTGGGGATGAGCATGTGGTAAAGTAAGTATAGTTTGAAACAGTGAAATTAAAGATGGTGTACGGTGAAGTTTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAATTCCTTCATCGAGAAAAATGAATCGAAAAATACGCTGAAAGCCCTTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>208 97 89 85 66 64 58 53 38 28 27 25 23 20 19 18 15 13 10 10 7 7 7 3 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>208 97 89 85 66 64 58 53 38 28 27 25 23 20 19 18 15 13 12 10 7 7 7 3 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAAGGGACAAGTATTTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTCTTTTCTGTTATAACCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAGAAGGGACAAGTATTTGTTTTATCCCGCCGTTATCAGTGTGAGCGGTAGGATGAAGCAACACAAAAAAGTGTGTGGGGATTTTTGGAAAAGTAAATTGAAACAGTAAATAAGAGGAAGAGACCCAGGAGGATCTCAATTACTGAAACGCAATGATAGGTCAATATGATCGGCGGATAAAAACGATTCTTTGAGAGCTAAATTTAGATTTCAGGAAATGAAAAAAAAGAGGTTATAACAGAAAAGAAACA</canonical_amplicon>
		<polymorphic_amplicon>AAGAAGGGACAAGTATTTGTTTTATCCCGCCGTTATCAGTGTGAGCGGTAGGATGAAGCAACACAAAAAARTGTGTGGGGATTTTTGGAAAAGTAAATTGAAACAGTAAATAAGAGGAAGAGACCCAGGAGGATCTCAATTACTGAAACGCAATGATAGGTCAATATGATCGGCGGATAAAAACGATTCTTTGAGAGCTAAATTTAGATTTCAGGAAATGAAAAAAAAGAGGTTATAACAGAAAAGAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33057</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>234172</contig_pos>
        <strand></strand>
        <context>atatatatat[A/T]tTTTTTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCAATTGAGAATGAAAGAGGAGGACTATATATATATATATATATATAT</left_flank>
        <right_flank>TTTTTTTTTTTTTTTTTTTTGATGACACAACAATCCCTATCCCAGAAACA</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAGACAGTCGGCGGTATGTGTTATACCGTAAAACCTGTAATAGGAGTGCCCCCACAGGAATCGAGAAAAAGTTGCTCAAAGTTCACATTTGGGGGCCCTTCTAATACAGGTTCTACGTTGACTAGCTCCCAATTGCTTATTTTTACACCCTAATAGTTCCAGGCACCTGCTGCTGCCGTCCAATATGATGTGACTCTTCCGGCTGCGGCCAAGAACCGATTCTCGAGAAACATCAAGTTCGGTAAGTCATATCTGAATCCCCGTCTCCTTCCATAGATCATCGAAAATTCGTAACACAATTCTCTTTGCTATTACTCCCTCCTAGTATAATAGCCTCTCACTTTTTTCTCACTTACACGCACCTTCTCGAATATCATTGAAAGAAAGTAAGTGTGGTCCCCACCCGAAGAACATCTCGAATTTCGTCACACCTGCATCTTCTCACATTTTCAATTGAGAATGAAAGAGGAGGACTATATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTGATGACACAACAATCCCTATCCCAGAAACACTATACCAAAAAAGCCGTGTATATGTTCTCACCCCTGGAATTGTGGCGCTGCAACGACACAACGACAAAGGCGAATTTGATTAACGCCACGGAGAATATTGGGGGCGAAAGAGAGCGGCGGGGAGGCTTGATTGATTTTGGTTTTGGTAGCAGCAGAGTTCGGAACGTCGCTCCCGCTAGAAAACAAAAACAACAATAATCGGATTTAGTTCAACAACGACTACTAAAACGTTGAGACACTGGGAAGGTGAACGGCAGTTTTCGTTGAACCAGGGACATAAAAATAGTTGGGTTCAGGAAAATATGTCGATCTGGGTTTTAGGAAATATAAAACCGTATCGGTATTCAGGTAGGCATTGAGTACTGTAGCGCAATTTTCTGATTACGGTTATGTTATCAAAGGATCTCTAGGATCTAAGATCTAGGAGCTAGATTTAGGAGAATTTGTAG</canonical>
            <polymorphic>TTTAGACAGTCGGCGGTATGTGTTATACCGTAAAACCTGTAATAGGAGTGCCCCCACAGGAATCGAGAAAAAGTTGCTCAAAGTTCACATTTGGGGGCCCTTCTAATACAGGTTCTACGTTGACTAGCTCCCAATTGCTTATTTTTACACCCTAATAGTTCCAGGCACCTGCTGCTGCCGTCCAATATGATGTGACTCTTCCGGCTGCGGCCAAGAACCGATTCTCGAGAAACATCAAGTTCGGTAAGTCATATCTGAATCCCCGTCTCCTTCCATAGATCATCGAAAATTCGTAACACAATTCTCTTTGCTATTACTCCCTCCTAGTATAATAGCCTCTCACTTTTTTCTCACTTACACGCACCTTCTCGAATATCATTGAAAGAAAGTAAGTGTGGTCCCCACCCGAAGAACATCTCGAATTTCGTCACACCTGCATCTTCTCACATTTTCAATTGAGAATGAAAGAGGAGGACTATATATATATATATATATATATWTTTTTTTTTTTTTTTTTTTTGATGACACAACAATCCCTATCCCAGAAACACTATACCAAAAAAGCCGTGTATATGTTCTCACCCCTGGAATTGTGGCGCTGCAACGACACAACGACAAAGGCGAATTTGATTAACGCCACGGAGAATATTGGGGGCGAAAGAGAGCGGCGGGGAGGCTTGATTGATTTTGGTTTTGGTAGCAGCAGAGTTCGGAACGTCGCTCCCGCTAGAAAACAAAAACAACAATAATCGGATTTAGTTCAACAACGACTACTAAAACGTTGAGACACTGGGAAGGTGAACGGCAGTTTTCGTTGAACCAGGGACATAAAAATAGTTGGGTTCAGGAAAATATGTCGATCTGGGTTTTAGGAAATATAAAACCGTATCGGTATTCAGGTAGGCATTGAGTACTGTAGCGCAATTTTCTGATTACGGTTATGTTATCAAAGGATCTCTAGGATCTAAGATCTAGGAGCTAGATTTAGGAGAATTTGTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCCTCCTAGTATAATAGCCTCT</pcr_primer_p1>
		<pcr_primer_p2>TTTGGTATAGTGTTTCTGGGATA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TCCCTCCTAGTATAATAGCCTCTCACTTTTTTCTCACTTACACGCACCTTCTCGAATATCATTGAAAGAAAGTAAGTGTGGTCCCCACCCGAAGAACATCTCGAATTTCGTCACACCTGCATCTTCTCACATTTTCAATTGAGAATGAAAGAGGAGGACTATATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTGATGACACAACAATCCCTATCCCAGAAACACTATACCAAA</canonical_amplicon>
		<polymorphic_amplicon>TCCCTCCTAGTATAATAGCCTCTCACTTTTTTCTCACTTACACGCACCTTCTCGAATATCATTGAAAGAAAGTAAGTGTGGTCCCCACCCGAAGAACATCTCGAATTTCGTCACACCTGCATCTTCTCACATTTTCAATTGAGAATGAAAGAGGAGGACTATATATATATATATATATATATWTTTTTTTTTTTTTTTTTTTTGATGACACAACAATCCCTATCCCAGAAACACTATACCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33058</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>234235</contig_pos>
        <strand>+</strand>
        <context>ATACCAAAAA[A/G]GCCGTGTATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTTTGATGACACAACAATCCCTATCCCAGAAACACTATACCAAAAA</left_flank>
        <right_flank>GCCGTGTATATGTTCTCACCCCTGGAATTGTGGCGCTGCAACGACACAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAGAAAAAGTTGCTCAAAGTTCACATTTGGGGGCCCTTCTAATACAGGTTCTACGTTGACTAGCTCCCAATTGCTTATTTTTACACCCTAATAGTTCCAGGCACCTGCTGCTGCCGTCCAATATGATGTGACTCTTCCGGCTGCGGCCAAGAACCGATTCTCGAGAAACATCAAGTTCGGTAAGTCATATCTGAATCCCCGTCTCCTTCCATAGATCATCGAAAATTCGTAACACAATTCTCTTTGCTATTACTCCCTCCTAGTATAATAGCCTCTCACTTTTTTCTCACTTACACGCACCTTCTCGAATATCATTGAAAGAAAGTAAGTGTGGTCCCCACCCGAAGAACATCTCGAATTTCGTCACACCTGCATCTTCTCACATTTTCAATTGAGAATGAAAGAGGAGGACTATATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTGATGACACAACAATCCCTATCCCAGAAACACTATACCAAAAAAGCCGTGTATATGTTCTCACCCCTGGAATTGTGGCGCTGCAACGACACAACGACAAAGGCGAATTTGATTAACGCCACGGAGAATATTGGGGGCGAAAGAGAGCGGCGGGGAGGCTTGATTGATTTTGGTTTTGGTAGCAGCAGAGTTCGGAACGTCGCTCCCGCTAGAAAACAAAAACAACAATAATCGGATTTAGTTCAACAACGACTACTAAAACGTTGAGACACTGGGAAGGTGAACGGCAGTTTTCGTTGAACCAGGGACATAAAAATAGTTGGGTTCAGGAAAATATGTCGATCTGGGTTTTAGGAAATATAAAACCGTATCGGTATTCAGGTAGGCATTGAGTACTGTAGCGCAATTTTCTGATTACGGTTATGTTATCAAAGGATCTCTAGGATCTAAGATCTAGGAGCTAGATTTAGGAGAATTTGTAGAAGTTAGGATCCAGGATTTGGGATCTAAGTTCTCTAGGATATAGAATTTTTAAGAACCAAGAT</canonical>
            <polymorphic>CGAGAAAAAGTTGCTCAAAGTTCACATTTGGGGGCCCTTCTAATACAGGTTCTACGTTGACTAGCTCCCAATTGCTTATTTTTACACCCTAATAGTTCCAGGCACCTGCTGCTGCCGTCCAATATGATGTGACTCTTCCGGCTGCGGCCAAGAACCGATTCTCGAGAAACATCAAGTTCGGTAAGTCATATCTGAATCCCCGTCTCCTTCCATAGATCATCGAAAATTCGTAACACAATTCTCTTTGCTATTACTCCCTCCTAGTATAATAGCCTCTCACTTTTTTCTCACTTACACGCACCTTCTCGAATATCATTGAAAGAAAGTAAGTGTGGTCCCCACCCGAAGAACATCTCGAATTTCGTCACACCTGCATCTTCTCACATTTTCAATTGAGAATGAAAGAGGAGGACTATATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTGATGACACAACAATCCCTATCCCAGAAACACTATACCAAAAARGCCGTGTATATGTTCTCACCCCTGGAATTGTGGCGCTGCAACGACACAACGACAAAGGCGAATTTGATTAACGCCACGGAGAATATTGGGGGCGAAAGAGAGCGGCGGGGAGGCTTGATTGATTTTGGTTTTGGTAGCAGCAGAGTTCGGAACGTCGCTCCCGCTAGAAAACAAAAACAACAATAATCGGATTTAGTTCAACAACGACTACTAAAACGTTGAGACACTGGGAAGGTGAACGGCAGTTTTCGTTGAACCAGGGACATAAAAATAGTTGGGTTCAGGAAAATATGTCGATCTGGGTTTTAGGAAATATAAAACCGTATCGGTATTCAGGTAGGCATTGAGTACTGTAGCGCAATTTTCTGATTACGGTTATGTTATCAAAGGATCTCTAGGATCTAAGATCTAGGAGCTAGATTTAGGAGAATTTGTAGAAGTTAGGATCCAGGATTTGGGATCTAAGTTCTCTAGGATATAGAATTTTTAAGAACCAAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>302 229 125 112 85 77 34 30 6</canonical_bands>
                <polymorphic_bands>341 302 125 85 77 34 30 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAATTGAGAATGAAAGAGG</pcr_primer_p1>
		<pcr_primer_p2>TACCAAAACCAAAATCAATCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCAATTGAGAATGAAAGAGGAGGACTATATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTGATGACACAACAATCCCTATCCCAGAAACACTATACCAAAAAAGCCGTGTATATGTTCTCACCCCTGGAATTGTGGCGCTGCAACGACACAACGACAAAGGCGAATTTGATTAACGCCACGGAGAATATTGGGGGCGAAAGAGAGCGGCGGGGAGGCTTGATTGATTTTGGTTTTGGTA</canonical_amplicon>
		<polymorphic_amplicon>TTTCAATTGAGAATGAAAGAGGAGGACTATATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTGATGACACAACAATCCCTATCCCAGAAACACTATACCAAAAARGCCGTGTATATGTTCTCACCCCTGGAATTGTGGCGCTGCAACGACACAACGACAAAGGCGAATTTGATTAACGCCACGGAGAATATTGGGGGCGAAAGAGAGCGGCGGGGAGGCTTGATTGATTTTGGTTTTGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33059</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>234269</contig_pos>
        <strand>+</strand>
        <context>GGAATTGTGG[C/G]GCTGCAACGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AACACTATACCAAAAAAGCCGTGTATATGTTCTCACCCCTGGAATTGTGG</left_flank>
        <right_flank>GCTGCAACGACACAACGACAAAGGCGAATTTGATTAACGCCACGGAGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCTTCTAATACAGGTTCTACGTTGACTAGCTCCCAATTGCTTATTTTTACACCCTAATAGTTCCAGGCACCTGCTGCTGCCGTCCAATATGATGTGACTCTTCCGGCTGCGGCCAAGAACCGATTCTCGAGAAACATCAAGTTCGGTAAGTCATATCTGAATCCCCGTCTCCTTCCATAGATCATCGAAAATTCGTAACACAATTCTCTTTGCTATTACTCCCTCCTAGTATAATAGCCTCTCACTTTTTTCTCACTTACACGCACCTTCTCGAATATCATTGAAAGAAAGTAAGTGTGGTCCCCACCCGAAGAACATCTCGAATTTCGTCACACCTGCATCTTCTCACATTTTCAATTGAGAATGAAAGAGGAGGACTATATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTGATGACACAACAATCCCTATCCCAGAAACACTATACCAAAAAAGCCGTGTATATGTTCTCACCCCTGGAATTGTGGCGCTGCAACGACACAACGACAAAGGCGAATTTGATTAACGCCACGGAGAATATTGGGGGCGAAAGAGAGCGGCGGGGAGGCTTGATTGATTTTGGTTTTGGTAGCAGCAGAGTTCGGAACGTCGCTCCCGCTAGAAAACAAAAACAACAATAATCGGATTTAGTTCAACAACGACTACTAAAACGTTGAGACACTGGGAAGGTGAACGGCAGTTTTCGTTGAACCAGGGACATAAAAATAGTTGGGTTCAGGAAAATATGTCGATCTGGGTTTTAGGAAATATAAAACCGTATCGGTATTCAGGTAGGCATTGAGTACTGTAGCGCAATTTTCTGATTACGGTTATGTTATCAAAGGATCTCTAGGATCTAAGATCTAGGAGCTAGATTTAGGAGAATTTGTAGAAGTTAGGATCCAGGATTTGGGATCTAAGTTCTCTAGGATATAGAATTTTTAAGAACCAAGATCTCTAGTTCAAGTCTCTATGGCTGATTTCGAATT</canonical>
            <polymorphic>CCCTTCTAATACAGGTTCTACGTTGACTAGCTCCCAATTGCTTATTTTTACACCCTAATAGTTCCAGGCACCTGCTGCTGCCGTCCAATATGATGTGACTCTTCCGGCTGCGGCCAAGAACCGATTCTCGAGAAACATCAAGTTCGGTAAGTCATATCTGAATCCCCGTCTCCTTCCATAGATCATCGAAAATTCGTAACACAATTCTCTTTGCTATTACTCCCTCCTAGTATAATAGCCTCTCACTTTTTTCTCACTTACACGCACCTTCTCGAATATCATTGAAAGAAAGTAAGTGTGGTCCCCACCCGAAGAACATCTCGAATTTCGTCACACCTGCATCTTCTCACATTTTCAATTGAGAATGAAAGAGGAGGACTATATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTGATGACACAACAATCCCTATCCCAGAAACACTATACCAAAAAAGCCGTGTATATGTTCTCACCCCTGGAATTGTGGSGCTGCAACGACACAACGACAAAGGCGAATTTGATTAACGCCACGGAGAATATTGGGGGCGAAAGAGAGCGGCGGGGAGGCTTGATTGATTTTGGTTTTGGTAGCAGCAGAGTTCGGAACGTCGCTCCCGCTAGAAAACAAAAACAACAATAATCGGATTTAGTTCAACAACGACTACTAAAACGTTGAGACACTGGGAAGGTGAACGGCAGTTTTCGTTGAACCAGGGACATAAAAATAGTTGGGTTCAGGAAAATATGTCGATCTGGGTTTTAGGAAATATAAAACCGTATCGGTATTCAGGTAGGCATTGAGTACTGTAGCGCAATTTTCTGATTACGGTTATGTTATCAAAGGATCTCTAGGATCTAAGATCTAGGAGCTAGATTTAGGAGAATTTGTAGAAGTTAGGATCCAGGATTTGGGATCTAAGTTCTCTAGGATATAGAATTTTTAAGAACCAAGATCTCTAGTTCAAGTCTCTATGGCTGATTTCGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 323 176</canonical_bands>
                <polymorphic_bands>824 176</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCCTATCCCAGAAACACTAT</pcr_primer_p1>
		<pcr_primer_p2>CGTTTTAGTAGTCGTTGTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCCCTATCCCAGAAACACTATACCAAAAAAGCCGTGTATATGTTCTCACCCCTGGAATTGTGGCGCTGCAACGACACAACGACAAAGGCGAATTTGATTAACGCCACGGAGAATATTGGGGGCGAAAGAGAGCGGCGGGGAGGCTTGATTGATTTTGGTTTTGGTAGCAGCAGAGTTCGGAACGTCGCTCCCGCTAGAAAACAAAAACAACAATAATCGGATTTAGTTCAACAACGACTACTAAAACG</canonical_amplicon>
		<polymorphic_amplicon>ATCCCTATCCCAGAAACACTATACCAAAAAAGCCGTGTATATGTTCTCACCCCTGGAATTGTGGSGCTGCAACGACACAACGACAAAGGCGAATTTGATTAACGCCACGGAGAATATTGGGGGCGAAAGAGAGCGGCGGGGAGGCTTGATTGATTTTGGTTTTGGTAGCAGCAGAGTTCGGAACGTCGCTCCCGCTAGAAAACAAAAACAACAATAATCGGATTTAGTTCAACAACGACTACTAAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33060</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>234294</contig_pos>
        <strand>+</strand>
        <context>ACGACAAAGG[C/G]GAATTTGATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TATGTTCTCACCCCTGGAATTGTGGCGCTGCAACGACACAACGACAAAGG</left_flank>
        <right_flank>GAATTTGATTAACGCCACGGAGAATATTGGGGGCGAAAGAGAGCGGCGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTAGCTCCCAATTGCTTATTTTTACACCCTAATAGTTCCAGGCACCTGCTGCTGCCGTCCAATATGATGTGACTCTTCCGGCTGCGGCCAAGAACCGATTCTCGAGAAACATCAAGTTCGGTAAGTCATATCTGAATCCCCGTCTCCTTCCATAGATCATCGAAAATTCGTAACACAATTCTCTTTGCTATTACTCCCTCCTAGTATAATAGCCTCTCACTTTTTTCTCACTTACACGCACCTTCTCGAATATCATTGAAAGAAAGTAAGTGTGGTCCCCACCCGAAGAACATCTCGAATTTCGTCACACCTGCATCTTCTCACATTTTCAATTGAGAATGAAAGAGGAGGACTATATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTGATGACACAACAATCCCTATCCCAGAAACACTATACCAAAAAAGCCGTGTATATGTTCTCACCCCTGGAATTGTGGCGCTGCAACGACACAACGACAAAGGCGAATTTGATTAACGCCACGGAGAATATTGGGGGCGAAAGAGAGCGGCGGGGAGGCTTGATTGATTTTGGTTTTGGTAGCAGCAGAGTTCGGAACGTCGCTCCCGCTAGAAAACAAAAACAACAATAATCGGATTTAGTTCAACAACGACTACTAAAACGTTGAGACACTGGGAAGGTGAACGGCAGTTTTCGTTGAACCAGGGACATAAAAATAGTTGGGTTCAGGAAAATATGTCGATCTGGGTTTTAGGAAATATAAAACCGTATCGGTATTCAGGTAGGCATTGAGTACTGTAGCGCAATTTTCTGATTACGGTTATGTTATCAAAGGATCTCTAGGATCTAAGATCTAGGAGCTAGATTTAGGAGAATTTGTAGAAGTTAGGATCCAGGATTTGGGATCTAAGTTCTCTAGGATATAGAATTTTTAAGAACCAAGATCTCTAGTTCAAGTCTCTATGGCTGATTTCGAATTATCAAATGTCGTCTTCTTCGGTTTC</canonical>
            <polymorphic>ACTAGCTCCCAATTGCTTATTTTTACACCCTAATAGTTCCAGGCACCTGCTGCTGCCGTCCAATATGATGTGACTCTTCCGGCTGCGGCCAAGAACCGATTCTCGAGAAACATCAAGTTCGGTAAGTCATATCTGAATCCCCGTCTCCTTCCATAGATCATCGAAAATTCGTAACACAATTCTCTTTGCTATTACTCCCTCCTAGTATAATAGCCTCTCACTTTTTTCTCACTTACACGCACCTTCTCGAATATCATTGAAAGAAAGTAAGTGTGGTCCCCACCCGAAGAACATCTCGAATTTCGTCACACCTGCATCTTCTCACATTTTCAATTGAGAATGAAAGAGGAGGACTATATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTGATGACACAACAATCCCTATCCCAGAAACACTATACCAAAAAAGCCGTGTATATGTTCTCACCCCTGGAATTGTGGCGCTGCAACGACACAACGACAAAGGSGAATTTGATTAACGCCACGGAGAATATTGGGGGCGAAAGAGAGCGGCGGGGAGGCTTGATTGATTTTGGTTTTGGTAGCAGCAGAGTTCGGAACGTCGCTCCCGCTAGAAAACAAAAACAACAATAATCGGATTTAGTTCAACAACGACTACTAAAACGTTGAGACACTGGGAAGGTGAACGGCAGTTTTCGTTGAACCAGGGACATAAAAATAGTTGGGTTCAGGAAAATATGTCGATCTGGGTTTTAGGAAATATAAAACCGTATCGGTATTCAGGTAGGCATTGAGTACTGTAGCGCAATTTTCTGATTACGGTTATGTTATCAAAGGATCTCTAGGATCTAAGATCTAGGAGCTAGATTTAGGAGAATTTGTAGAAGTTAGGATCCAGGATTTGGGATCTAAGTTCTCTAGGATATAGAATTTTTAAGAACCAAGATCTCTAGTTCAAGTCTCTATGGCTGATTTCGAATTATCAAATGTCGTCTTCTTCGGTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCCTATCCCAGAAACACTAT</pcr_primer_p1>
		<pcr_primer_p2>CGTTTTAGTAGTCGTTGTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCCCTATCCCAGAAACACTATACCAAAAAAGCCGTGTATATGTTCTCACCCCTGGAATTGTGGCGCTGCAACGACACAACGACAAAGGCGAATTTGATTAACGCCACGGAGAATATTGGGGGCGAAAGAGAGCGGCGGGGAGGCTTGATTGATTTTGGTTTTGGTAGCAGCAGAGTTCGGAACGTCGCTCCCGCTAGAAAACAAAAACAACAATAATCGGATTTAGTTCAACAACGACTACTAAAACG</canonical_amplicon>
		<polymorphic_amplicon>ATCCCTATCCCAGAAACACTATACCAAAAAAGCCGTGTATATGTTCTCACCCCTGGAATTGTGGCGCTGCAACGACACAACGACAAAGGSGAATTTGATTAACGCCACGGAGAATATTGGGGGCGAAAGAGAGCGGCGGGGAGGCTTGATTGATTTTGGTTTTGGTAGCAGCAGAGTTCGGAACGTCGCTCCCGCTAGAAAACAAAAACAACAATAATCGGATTTAGTTCAACAACGACTACTAAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33061</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>234335</contig_pos>
        <strand>+</strand>
        <context>GGGCGAAAGA[A/G]AGCGGCGGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGACAAAGGCGAATTTGATTAACGCCACGGAGAATATTGGGGGCGAAAGA</left_flank>
        <right_flank>AGCGGCGGGGAGGCTTGATTGATTTTGGTTTTGGTAGCAGCAGAGTTCGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCACCTGCTGCTGCCGTCCAATATGATGTGACTCTTCCGGCTGCGGCCAAGAACCGATTCTCGAGAAACATCAAGTTCGGTAAGTCATATCTGAATCCCCGTCTCCTTCCATAGATCATCGAAAATTCGTAACACAATTCTCTTTGCTATTACTCCCTCCTAGTATAATAGCCTCTCACTTTTTTCTCACTTACACGCACCTTCTCGAATATCATTGAAAGAAAGTAAGTGTGGTCCCCACCCGAAGAACATCTCGAATTTCGTCACACCTGCATCTTCTCACATTTTCAATTGAGAATGAAAGAGGAGGACTATATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTGATGACACAACAATCCCTATCCCAGAAACACTATACCAAAAAAGCCGTGTATATGTTCTCACCCCTGGAATTGTGGCGCTGCAACGACACAACGACAAAGGCGAATTTGATTAACGCCACGGAGAATATTGGGGGCGAAAGAGAGCGGCGGGGAGGCTTGATTGATTTTGGTTTTGGTAGCAGCAGAGTTCGGAACGTCGCTCCCGCTAGAAAACAAAAACAACAATAATCGGATTTAGTTCAACAACGACTACTAAAACGTTGAGACACTGGGAAGGTGAACGGCAGTTTTCGTTGAACCAGGGACATAAAAATAGTTGGGTTCAGGAAAATATGTCGATCTGGGTTTTAGGAAATATAAAACCGTATCGGTATTCAGGTAGGCATTGAGTACTGTAGCGCAATTTTCTGATTACGGTTATGTTATCAAAGGATCTCTAGGATCTAAGATCTAGGAGCTAGATTTAGGAGAATTTGTAGAAGTTAGGATCCAGGATTTGGGATCTAAGTTCTCTAGGATATAGAATTTTTAAGAACCAAGATCTCTAGTTCAAGTCTCTATGGCTGATTTCGAATTATCAAATGTCGTCTTCTTCGGTTTCCTGGAAGCTTCTAGAATCTGTGGTTGGAAGAATCAAGATTA</canonical>
            <polymorphic>GGCACCTGCTGCTGCCGTCCAATATGATGTGACTCTTCCGGCTGCGGCCAAGAACCGATTCTCGAGAAACATCAAGTTCGGTAAGTCATATCTGAATCCCCGTCTCCTTCCATAGATCATCGAAAATTCGTAACACAATTCTCTTTGCTATTACTCCCTCCTAGTATAATAGCCTCTCACTTTTTTCTCACTTACACGCACCTTCTCGAATATCATTGAAAGAAAGTAAGTGTGGTCCCCACCCGAAGAACATCTCGAATTTCGTCACACCTGCATCTTCTCACATTTTCAATTGAGAATGAAAGAGGAGGACTATATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTGATGACACAACAATCCCTATCCCAGAAACACTATACCAAAAAAGCCGTGTATATGTTCTCACCCCTGGAATTGTGGCGCTGCAACGACACAACGACAAAGGCGAATTTGATTAACGCCACGGAGAATATTGGGGGCGAAAGARAGCGGCGGGGAGGCTTGATTGATTTTGGTTTTGGTAGCAGCAGAGTTCGGAACGTCGCTCCCGCTAGAAAACAAAAACAACAATAATCGGATTTAGTTCAACAACGACTACTAAAACGTTGAGACACTGGGAAGGTGAACGGCAGTTTTCGTTGAACCAGGGACATAAAAATAGTTGGGTTCAGGAAAATATGTCGATCTGGGTTTTAGGAAATATAAAACCGTATCGGTATTCAGGTAGGCATTGAGTACTGTAGCGCAATTTTCTGATTACGGTTATGTTATCAAAGGATCTCTAGGATCTAAGATCTAGGAGCTAGATTTAGGAGAATTTGTAGAAGTTAGGATCCAGGATTTGGGATCTAAGTTCTCTAGGATATAGAATTTTTAAGAACCAAGATCTCTAGTTCAAGTCTCTATGGCTGATTTCGAATTATCAAATGTCGTCTTCTTCGGTTTCCTGGAAGCTTCTAGAATCTGTGGTTGGAAGAATCAAGATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCCTATCCCAGAAACACTAT</pcr_primer_p1>
		<pcr_primer_p2>CGTTTTAGTAGTCGTTGTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCCCTATCCCAGAAACACTATACCAAAAAAGCCGTGTATATGTTCTCACCCCTGGAATTGTGGCGCTGCAACGACACAACGACAAAGGCGAATTTGATTAACGCCACGGAGAATATTGGGGGCGAAAGAGAGCGGCGGGGAGGCTTGATTGATTTTGGTTTTGGTAGCAGCAGAGTTCGGAACGTCGCTCCCGCTAGAAAACAAAAACAACAATAATCGGATTTAGTTCAACAACGACTACTAAAACG</canonical_amplicon>
		<polymorphic_amplicon>ATCCCTATCCCAGAAACACTATACCAAAAAAGCCGTGTATATGTTCTCACCCCTGGAATTGTGGCGCTGCAACGACACAACGACAAAGGCGAATTTGATTAACGCCACGGAGAATATTGGGGGCGAAAGARAGCGGCGGGGAGGCTTGATTGATTTTGGTTTTGGTAGCAGCAGAGTTCGGAACGTCGCTCCCGCTAGAAAACAAAAACAACAATAATCGGATTTAGTTCAACAACGACTACTAAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33062</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>234454</contig_pos>
        <strand>+</strand>
        <context>TACTAAAACG[G/T]TGAGACACTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAACAAAAACAACAATAATCGGATTTAGTTCAACAACGACTACTAAAACG</left_flank>
        <right_flank>TGAGACACTGGGAAGGTGAACGGCAGTTTTCGTTGAACCAGGGACATAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAAAATTCGTAACACAATTCTCTTTGCTATTACTCCCTCCTAGTATAATAGCCTCTCACTTTTTTCTCACTTACACGCACCTTCTCGAATATCATTGAAAGAAAGTAAGTGTGGTCCCCACCCGAAGAACATCTCGAATTTCGTCACACCTGCATCTTCTCACATTTTCAATTGAGAATGAAAGAGGAGGACTATATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTGATGACACAACAATCCCTATCCCAGAAACACTATACCAAAAAAGCCGTGTATATGTTCTCACCCCTGGAATTGTGGCGCTGCAACGACACAACGACAAAGGCGAATTTGATTAACGCCACGGAGAATATTGGGGGCGAAAGAGAGCGGCGGGGAGGCTTGATTGATTTTGGTTTTGGTAGCAGCAGAGTTCGGAACGTCGCTCCCGCTAGAAAACAAAAACAACAATAATCGGATTTAGTTCAACAACGACTACTAAAACGTTGAGACACTGGGAAGGTGAACGGCAGTTTTCGTTGAACCAGGGACATAAAAATAGTTGGGTTCAGGAAAATATGTCGATCTGGGTTTTAGGAAATATAAAACCGTATCGGTATTCAGGTAGGCATTGAGTACTGTAGCGCAATTTTCTGATTACGGTTATGTTATCAAAGGATCTCTAGGATCTAAGATCTAGGAGCTAGATTTAGGAGAATTTGTAGAAGTTAGGATCCAGGATTTGGGATCTAAGTTCTCTAGGATATAGAATTTTTAAGAACCAAGATCTCTAGTTCAAGTCTCTATGGCTGATTTCGAATTATCAAATGTCGTCTTCTTCGGTTTCCTGGAAGCTTCTAGAATCTGTGGTTGGAAGAATCAAGATTAGAATTATAAACTAGCCCTCTAGACTTAATTCCTCAGATGGGACTTTTCTGAAAAACCTTCCATGTTCAGTTTTCTCAATCTGGATTCCAGAGTCTGGAATCTCCCCTATGTTATTTCCT</canonical>
            <polymorphic>TCGAAAATTCGTAACACAATTCTCTTTGCTATTACTCCCTCCTAGTATAATAGCCTCTCACTTTTTTCTCACTTACACGCACCTTCTCGAATATCATTGAAAGAAAGTAAGTGTGGTCCCCACCCGAAGAACATCTCGAATTTCGTCACACCTGCATCTTCTCACATTTTCAATTGAGAATGAAAGAGGAGGACTATATATATATATATATATATATATTTTTTTTTTTTTTTTTTTTGATGACACAACAATCCCTATCCCAGAAACACTATACCAAAAAAGCCGTGTATATGTTCTCACCCCTGGAATTGTGGCGCTGCAACGACACAACGACAAAGGCGAATTTGATTAACGCCACGGAGAATATTGGGGGCGAAAGAGAGCGGCGGGGAGGCTTGATTGATTTTGGTTTTGGTAGCAGCAGAGTTCGGAACGTCGCTCCCGCTAGAAAACAAAAACAACAATAATCGGATTTAGTTCAACAACGACTACTAAAACGKTGAGACACTGGGAAGGTGAACGGCAGTTTTCGTTGAACCAGGGACATAAAAATAGTTGGGTTCAGGAAAATATGTCGATCTGGGTTTTAGGAAATATAAAACCGTATCGGTATTCAGGTAGGCATTGAGTACTGTAGCGCAATTTTCTGATTACGGTTATGTTATCAAAGGATCTCTAGGATCTAAGATCTAGGAGCTAGATTTAGGAGAATTTGTAGAAGTTAGGATCCAGGATTTGGGATCTAAGTTCTCTAGGATATAGAATTTTTAAGAACCAAGATCTCTAGTTCAAGTCTCTATGGCTGATTTCGAATTATCAAATGTCGTCTTCTTCGGTTTCCTGGAAGCTTCTAGAATCTGTGGTTGGAAGAATCAAGATTAGAATTATAAACTAGCCCTCTAGACTTAATTCCTCAGATGGGACTTTTCTGAAAAACCTTCCATGTTCAGTTTTCTCAATCTGGATTCCAGAGTCTGGAATCTCCCCTATGTTATTTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>503 433 64</canonical_bands>
                <polymorphic_bands>567 433</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGGTAGCAGCAGAGTTC</pcr_primer_p1>
		<pcr_primer_p2>ACATAACCGTAATCAGAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTTTGGTAGCAGCAGAGTTCGGAACGTCGCTCCCGCTAGAAAACAAAAACAACAATAATCGGATTTAGTTCAACAACGACTACTAAAACGTTGAGACACTGGGAAGGTGAACGGCAGTTTTCGTTGAACCAGGGACATAAAAATAGTTGGGTTCAGGAAAATATGTCGATCTGGGTTTTAGGAAATATAAAACCGTATCGGTATTCAGGTAGGCATTGAGTACTGTAGCGCAATTTTCTGATTACGGTTATGT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGGTAGCAGCAGAGTTCGGAACGTCGCTCCCGCTAGAAAACAAAAACAACAATAATCGGATTTAGTTCAACAACGACTACTAAAACGKTGAGACACTGGGAAGGTGAACGGCAGTTTTCGTTGAACCAGGGACATAAAAATAGTTGGGTTCAGGAAAATATGTCGATCTGGGTTTTAGGAAATATAAAACCGTATCGGTATTCAGGTAGGCATTGAGTACTGTAGCGCAATTTTCTGATTACGGTTATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33063</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>236943</contig_pos>
        <strand>+</strand>
        <context>TTTTGGGGCC[A/G]CCTAATTAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATGGGTTCTTCTGGGTGCGATTTTAAGGCACTGAGTGATTTTGGGGCC</left_flank>
        <right_flank>CCTAATTAAAGTAATGCATGTGTGGGCTAAAGAATGACACTCTCCAGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATTAGACTTCTGATGTCATAGTGACGTTTCGAATTTCGTCTTCTTCTTCTTCCTTTTAAAAGTTTAAATTCTCTTTCGTCCCAATTTTTTCATTTGGATAACGTGCTTGAAGATGAATGTTTCTTACCTCGATTCCCCTCTTCTTCAGTATGCCAAAATTTTAATAAATGGAGTACACATTTCCCCCTACCCCACTAAAAATTTAAGTAAAAAAATGTGTCCGTCGCACTCTTCTACTCTTACTCCGACGTCTTCTTCTCCTTCTTCTGAATTCATATTCAGTTTTGTCCCTGTCTTCGGGTCCCCCGAGGCGGTCCTCTTCGAAACTCAAGAAGAATTGGAAAAATTCAAGAAGAGAGAGAGAGAGAATTTTTCAAAAAGAAAGACTCACTTTCTAAAGAAATAAAAACAGAACGAGAGGGGCAAAACACTCAAAAAAAGTTGCTCTAATGGGTTCTTCTGGGTGCGATTTTAAGGCACTGAGTGATTTTGGGGCCGCCTAATTAAAGTAATGCATGTGTGGGCTAAAGAATGACACTCTCCAGATTTATGACTGATACTTTTTGGCGTCTCCAGAAGTAGCTTGGGTTTAAGTGGGTAGTTCAAGTCCATTAGGAATTCAAGGAGAGAGAACTTTTTTGAAATCAGAGTGCTTTAGGTCGATGGGTTTTTGGTTTTAAGTGAGTCAGACTTTTGAAAATAGAAGAGGATTCAGAGTTTGGAATTCCAAAAATTCTGAAAAAAAGTACCCTTACTATTACCGTAAAACCTGTAATACAAGGGCTCCTTAAATTTTAACTTTGAGCCAATATTTCTTAGTTTTTGTCAAAGATATAGAAACGGTTAAAATGTCAACGGATAAAATGTTTAAGATGATAACACCAACATCTTATCAGTTAACACATTTTTGATATCTTGCATAGAATCCAAGAAAAATTATCTCAAACTTGACAGTGTGGGGGCCCCTTCTATTACAGGTTTGGGTATTTTTTGGCTCC</canonical>
            <polymorphic>TAATTAGACTTCTGATGTCATAGTGACGTTTCGAATTTCGTCTTCTTCTTCTTCCTTTTAAAAGTTTAAATTCTCTTTCGTCCCAATTTTTTCATTTGGATAACGTGCTTGAAGATGAATGTTTCTTACCTCGATTCCCCTCTTCTTCAGTATGCCAAAATTTTAATAAATGGAGTACACATTTCCCCCTACCCCACTAAAAATTTAAGTAAAAAAATGTGTCCGTCGCACTCTTCTACTCTTACTCCGACGTCTTCTTCTCCTTCTTCTGAATTCATATTCAGTTTTGTCCCTGTCTTCGGGTCCCCCGAGGCGGTCCTCTTCGAAACTCAAGAAGAATTGGAAAAATTCAAGAAGAGAGAGAGAGAGAATTTTTCAAAAAGAAAGACTCACTTTCTAAAGAAATAAAAACAGAACGAGAGGGGCAAAACACTCAAAAAAAGTTGCTCTAATGGGTTCTTCTGGGTGCGATTTTAAGGCACTGAGTGATTTTGGGGCCRCCTAATTAAAGTAATGCATGTGTGGGCTAAAGAATGACACTCTCCAGATTTATGACTGATACTTTTTGGCGTCTCCAGAAGTAGCTTGGGTTTAAGTGGGTAGTTCAAGTCCATTAGGAATTCAAGGAGAGAGAACTTTTTTGAAATCAGAGTGCTTTAGGTCGATGGGTTTTTGGTTTTAAGTGAGTCAGACTTTTGAAAATAGAAGAGGATTCAGAGTTTGGAATTCCAAAAATTCTGAAAAAAAGTACCCTTACTATTACCGTAAAACCTGTAATACAAGGGCTCCTTAAATTTTAACTTTGAGCCAATATTTCTTAGTTTTTGTCAAAGATATAGAAACGGTTAAAATGTCAACGGATAAAATGTTTAAGATGATAACACCAACATCTTATCAGTTAACACATTTTTGATATCTTGCATAGAATCCAAGAAAAATTATCTCAAACTTGACAGTGTGGGGGCCCCTTCTATTACAGGTTTGGGTATTTTTTGGCTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>502 312 186</canonical_bands>
                <polymorphic_bands>688 312</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTCAAGAAGAATTGGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GCCAAAAAGTATCAGTCATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AACTCAAGAAGAATTGGAAAAATTCAAGAAGAGAGAGAGAGAGAATTTTTCAAAAAGAAAGACTCACTTTCTAAAGAAATAAAAACAGAACGAGAGGGGCAAAACACTCAAAAAAAGTTGCTCTAATGGGTTCTTCTGGGTGCGATTTTAAGGCACTGAGTGATTTTGGGGCCGCCTAATTAAAGTAATGCATGTGTGGGCTAAAGAATGACACTCTCCAGATTTATGACTGATACTTTTTGGC</canonical_amplicon>
		<polymorphic_amplicon>AACTCAAGAAGAATTGGAAAAATTCAAGAAGAGAGAGAGAGAGAATTTTTCAAAAAGAAAGACTCACTTTCTAAAGAAATAAAAACAGAACGAGAGGGGCAAAACACTCAAAAAAAGTTGCTCTAATGGGTTCTTCTGGGTGCGATTTTAAGGCACTGAGTGATTTTGGGGCCRCCTAATTAAAGTAATGCATGTGTGGGCTAAAGAATGACACTCTCCAGATTTATGACTGATACTTTTTGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33064</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>267906</contig_pos>
        <strand>+</strand>
        <context>CCATTTCGGG[A/G]AATTTCGATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTAGAAGATCCATAACACCGAATCCGGTTCCACCTTTCGCCATTTCGGG</left_flank>
        <right_flank>AATTTCGATCCATCGTAACGGATCCAAAACAAATATCGCCGAATTTCCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGAAGAAGAAACGCAGAGAAACGCTATTTTTGAAGAAGAAGAACTTTTTGATGTAGAGATTACCTATATGACACACTTCTTCTGATACAAAATCCAGCAGAGACAGAGTGTGCATCTAGGATTTCTAGAGATCCCGGATTTGCGGCGTCAATGATTGATTTCCATGTTCTCATGTATTGGATCTTAGTTTCGGGACATTTGTCTAGATCAGCGAATTCCAATGGAACCTGAAACGAAGGATATTGATGAAACAAGCCAGGCAAAATTTACCTGGCAAATTACGGAACTTCGAATCGCATGAACTTTTGCATCAGTTCGACTGCTTGGAGAAAACTTCAATTTATCCTTTTGCTCTGGGTGTTGCTCTCTTCGCGGTCCGAATATCGACTGTGACACTGTCTGAAAAACAATTACCAAGCTTGTTCGATTTCCTAATGTAAAACCTGATTTAGAAGATCCATAACACCGAATCCGGTTCCACCTTTCGCCATTTCGGGAAATTTCGATCCATCGTAACGGATCCAAAACAAATATCGCCGAATTTCCCTCATGATTTCAGTTGTTTCAGTGATTATTTTCAAATGATGAGTTCTCCGAGAGGACTACACGGCAAACAGTTTCAGGCGGCCTAGGTTCAGCAGATGTCTGTGTCTCATCAATTTGTATTGTGTCTTTGAGGAAAAAGAAGAGCGAAGTTTGAAATGGTCTTTAAATGCAAGAATTTTATTCAGAAGATCGAAAGGGTATTGAGTGATAATTTCAGATTTTAGCTTGGCTTCACCGCTTCAGCAGACCATTTCCAACTTGATTCCTTTGTCATCTTTTTTCCAAAAAAGGTTCCTCCTTCCTCCACATTTGATCAGCTATAAATTTTGTTTTGCTTCTCTTAAAATTTGTGGTGTTTGAAAAATGAAGACTGCGAAAAAATTATTGGTTATCACCTGGTTCCCCGCTGAGTTTAGTTGTAATCTGGATTTTCAGAGTTTTCTTCCTTTTGA</canonical>
            <polymorphic>ATAGAAGAAGAAACGCAGAGAAACGCTATTTTTGAAGAAGAAGAACTTTTTGATGTAGAGATTACCTATATGACACACTTCTTCTGATACAAAATCCAGCAGAGACAGAGTGTGCATCTAGGATTTCTAGAGATCCCGGATTTGCGGCGTCAATGATTGATTTCCATGTTCTCATGTATTGGATCTTAGTTTCGGGACATTTGTCTAGATCAGCGAATTCCAATGGAACCTGAAACGAAGGATATTGATGAAACAAGCCAGGCAAAATTTACCTGGCAAATTACGGAACTTCGAATCGCATGAACTTTTGCATCAGTTCGACTGCTTGGAGAAAACTTCAATTTATCCTTTTGCTCTGGGTGTTGCTCTCTTCGCGGTCCGAATATCGACTGTGACACTGTCTGAAAAACAATTACCAAGCTTGTTCGATTTCCTAATGTAAAACCTGATTTAGAAGATCCATAACACCGAATCCGGTTCCACCTTTCGCCATTTCGGGRAATTTCGATCCATCGTAACGGATCCAAAACAAATATCGCCGAATTTCCCTCATGATTTCAGTTGTTTCAGTGATTATTTTCAAATGATGAGTTCTCCGAGAGGACTACACGGCAAACAGTTTCAGGCGGCCTAGGTTCAGCAGATGTCTGTGTCTCATCAATTTGTATTGTGTCTTTGAGGAAAAAGAAGAGCGAAGTTTGAAATGGTCTTTAAATGCAAGAATTTTATTCAGAAGATCGAAAGGGTATTGAGTGATAATTTCAGATTTTAGCTTGGCTTCACCGCTTCAGCAGACCATTTCCAACTTGATTCCTTTGTCATCTTTTTTCCAAAAAAGGTTCCTCCTTCCTCCACATTTGATCAGCTATAAATTTTGTTTTGCTTCTCTTAAAATTTGTGGTGTTTGAAAAATGAAGACTGCGAAAAAATTATTGGTTATCACCTGGTTCCCCGCTGAGTTTAGTTGTAATCTGGATTTTCAGAGTTTTCTTCCTTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>235 215 180 149 108 50 41 22</canonical_bands>
                <polymorphic_bands>276 215 180 149 108 50 22</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>421 291 127 66 55 28 12</canonical_bands>
                <polymorphic_bands>421 346 127 66 28 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTCGATTTCCTAATGTAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CACAATACAAATTGATGAGACAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTTCGATTTCCTAATGTAAAACCTGATTTAGAAGATCCATAACACCGAATCCGGTTCCACCTTTCGCCATTTCGGGAAATTTCGATCCATCGTAACGGATCCAAAACAAATATCGCCGAATTTCCCTCATGATTTCAGTTGTTTCAGTGATTATTTTCAAATGATGAGTTCTCCGAGAGGACTACACGGCAAACAGTTTCAGGCGGCCTAGGTTCAGCAGATGTCTGTGTCTCATCAATTTGTATTGTG</canonical_amplicon>
		<polymorphic_amplicon>TGTTCGATTTCCTAATGTAAAACCTGATTTAGAAGATCCATAACACCGAATCCGGTTCCACCTTTCGCCATTTCGGGRAATTTCGATCCATCGTAACGGATCCAAAACAAATATCGCCGAATTTCCCTCATGATTTCAGTTGTTTCAGTGATTATTTTCAAATGATGAGTTCTCCGAGAGGACTACACGGCAAACAGTTTCAGGCGGCCTAGGTTCAGCAGATGTCTGTGTCTCATCAATTTGTATTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33065</snp_id>
        <super_contig>c007900891.Contig1</super_contig>
        <contig_pos>267945</contig_pos>
        <strand>+</strand>
        <context>ACAAATATCG[C/T]CGAATTTCCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCATTTCGGGAAATTTCGATCCATCGTAACGGATCCAAAACAAATATCG</left_flank>
        <right_flank>CGAATTTCCCTCATGATTTCAGTTGTTTCAGTGATTATTTTCAAATGATG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGAACTTTTTGATGTAGAGATTACCTATATGACACACTTCTTCTGATACAAAATCCAGCAGAGACAGAGTGTGCATCTAGGATTTCTAGAGATCCCGGATTTGCGGCGTCAATGATTGATTTCCATGTTCTCATGTATTGGATCTTAGTTTCGGGACATTTGTCTAGATCAGCGAATTCCAATGGAACCTGAAACGAAGGATATTGATGAAACAAGCCAGGCAAAATTTACCTGGCAAATTACGGAACTTCGAATCGCATGAACTTTTGCATCAGTTCGACTGCTTGGAGAAAACTTCAATTTATCCTTTTGCTCTGGGTGTTGCTCTCTTCGCGGTCCGAATATCGACTGTGACACTGTCTGAAAAACAATTACCAAGCTTGTTCGATTTCCTAATGTAAAACCTGATTTAGAAGATCCATAACACCGAATCCGGTTCCACCTTTCGCCATTTCGGGAAATTTCGATCCATCGTAACGGATCCAAAACAAATATCGCCGAATTTCCCTCATGATTTCAGTTGTTTCAGTGATTATTTTCAAATGATGAGTTCTCCGAGAGGACTACACGGCAAACAGTTTCAGGCGGCCTAGGTTCAGCAGATGTCTGTGTCTCATCAATTTGTATTGTGTCTTTGAGGAAAAAGAAGAGCGAAGTTTGAAATGGTCTTTAAATGCAAGAATTTTATTCAGAAGATCGAAAGGGTATTGAGTGATAATTTCAGATTTTAGCTTGGCTTCACCGCTTCAGCAGACCATTTCCAACTTGATTCCTTTGTCATCTTTTTTCCAAAAAAGGTTCCTCCTTCCTCCACATTTGATCAGCTATAAATTTTGTTTTGCTTCTCTTAAAATTTGTGGTGTTTGAAAAATGAAGACTGCGAAAAAATTATTGGTTATCACCTGGTTCCCCGCTGAGTTTAGTTGTAATCTGGATTTTCAGAGTTTTCTTCCTTTTGAGAGAATCTACCTTGGTCTTTGAGCATTTCTTCAGCATAA</canonical>
            <polymorphic>GAAGAACTTTTTGATGTAGAGATTACCTATATGACACACTTCTTCTGATACAAAATCCAGCAGAGACAGAGTGTGCATCTAGGATTTCTAGAGATCCCGGATTTGCGGCGTCAATGATTGATTTCCATGTTCTCATGTATTGGATCTTAGTTTCGGGACATTTGTCTAGATCAGCGAATTCCAATGGAACCTGAAACGAAGGATATTGATGAAACAAGCCAGGCAAAATTTACCTGGCAAATTACGGAACTTCGAATCGCATGAACTTTTGCATCAGTTCGACTGCTTGGAGAAAACTTCAATTTATCCTTTTGCTCTGGGTGTTGCTCTCTTCGCGGTCCGAATATCGACTGTGACACTGTCTGAAAAACAATTACCAAGCTTGTTCGATTTCCTAATGTAAAACCTGATTTAGAAGATCCATAACACCGAATCCGGTTCCACCTTTCGCCATTTCGGGAAATTTCGATCCATCGTAACGGATCCAAAACAAATATCGYCGAATTTCCCTCATGATTTCAGTTGTTTCAGTGATTATTTTCAAATGATGAGTTCTCCGAGAGGACTACACGGCAAACAGTTTCAGGCGGCCTAGGTTCAGCAGATGTCTGTGTCTCATCAATTTGTATTGTGTCTTTGAGGAAAAAGAAGAGCGAAGTTTGAAATGGTCTTTAAATGCAAGAATTTTATTCAGAAGATCGAAAGGGTATTGAGTGATAATTTCAGATTTTAGCTTGGCTTCACCGCTTCAGCAGACCATTTCCAACTTGATTCCTTTGTCATCTTTTTTCCAAAAAAGGTTCCTCCTTCCTCCACATTTGATCAGCTATAAATTTTGTTTTGCTTCTCTTAAAATTTGTGGTGTTTGAAAAATGAAGACTGCGAAAAAATTATTGGTTATCACCTGGTTCCCCGCTGAGTTTAGTTGTAATCTGGATTTTCAGAGTTTTCTTCCTTTTGAGAGAATCTACCTTGGTCTTTGAGCATTTCTTCAGCATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTCGATTTCCTAATGTAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CACAATACAAATTGATGAGACAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTTCGATTTCCTAATGTAAAACCTGATTTAGAAGATCCATAACACCGAATCCGGTTCCACCTTTCGCCATTTCGGGAAATTTCGATCCATCGTAACGGATCCAAAACAAATATCGCCGAATTTCCCTCATGATTTCAGTTGTTTCAGTGATTATTTTCAAATGATGAGTTCTCCGAGAGGACTACACGGCAAACAGTTTCAGGCGGCCTAGGTTCAGCAGATGTCTGTGTCTCATCAATTTGTATTGTG</canonical_amplicon>
		<polymorphic_amplicon>TGTTCGATTTCCTAATGTAAAACCTGATTTAGAAGATCCATAACACCGAATCCGGTTCCACCTTTCGCCATTTCGGGAAATTTCGATCCATCGTAACGGATCCAAAACAAATATCGYCGAATTTCCCTCATGATTTCAGTTGTTTCAGTGATTATTTTCAAATGATGAGTTCTCCGAGAGGACTACACGGCAAACAGTTTCAGGCGGCCTAGGTTCAGCAGATGTCTGTGTCTCATCAATTTGTATTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33066</snp_id>
        <super_contig>c007901146.Contig1</super_contig>
        <contig_pos>7370</contig_pos>
        <strand>+</strand>
        <context>TGACACGATC[A/G]ATTGGCTGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAACAACTTGAGCAGGTTCACGCCTTGCTGGCGGTGCAATGACACGATC</left_flank>
        <right_flank>ATTGGCTGTTGAACTGAAGCTGGTGGCGTTTCTGGAATATGATCGATTCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGTTCTGTCTGTTCCCCATATACTCTGCACTCTGCTGTCCTCGTACATTCTGAGTTTCGAAATATCGAAATCATCAAGTGTCGCGCCATTCGAAGCCGTAGAAGTGGCCGTCGATGTTGATGGAGCTATCGACGTAACAGGAGCAGGAGCCGGAGCCGTGGGCTTGAATGCGGTGAACGGCAGACGATCCTCGAAAACGTCATTTCTGGATGGAAGCGATTGTGGTGGTGTCTGAGGTTGTACTGGGGGTCCGGGAGCACGAGAGAATTCATTGCTCAATCTAGTACCAGGAGCTTTTGAAAACGTTGGCTGTTGCTGTATTTGTTGCATGTGTTGTTGGAGCGATACTGCTGGACGGGAAATCGGATCCGGGAACCGTGGTGGCTGAGCTACTTCTTGTGGTCTTTGCTGTGGAACTGGAGTATGCTGATGAACTGGGGGTACCGGTTGAACAACTTGAGCAGGTTCACGCCTTGCTGGCGGTGCAATGACACGATCGATTGGCTGTTGAACTGAAGCTGGTGGCGTTTCTGGAATATGATCGATTCGAATGTGTTAAAAAAGCAGATTCAACTTACGGGTTGGTTTGGTGACATTTTCAGTTGCTTGAGGCACACTAGATTGAGCCAAAGACTGGCGGACAGCTGGTGAAGCTGTTTGACGGGCAGGTTGCTGGACTTGAGGTGATGGTGTTGGTTGTTGCTTAGTCTGCGTCTGTGTTGGAGGAGTCTCACCTCTCGCCGCCATTCTCTGTTGCCAAACGTTCGCACCGTCCTTTGTCGCTTGATTTCCATGTGATTTTGAGGATCGGTTACATTGTGAGGGCACTGGAACTGGAGACGACTGGCGAGCGATACTGGCCGACGACAACGAATGGGGAATCGAATGTGTAGAATCCACGGCGCTCTTGGATGTTCCTTCAGAAGAAAGAGATGAAGCAACAGACACATTTCCATGAGTAGCAGTTCGAATCGCATCGTGAATCAGAACATCTTTATC</canonical>
            <polymorphic>TCGTTCTGTCTGTTCCCCATATACTCTGCACTCTGCTGTCCTCGTACATTCTGAGTTTCGAAATATCGAAATCATCAAGTGTCGCGCCATTCGAAGCCGTAGAAGTGGCCGTCGATGTTGATGGAGCTATCGACGTAACAGGAGCAGGAGCCGGAGCCGTGGGCTTGAATGCGGTGAACGGCAGACGATCCTCGAAAACGTCATTTCTGGATGGAAGCGATTGTGGTGGTGTCTGAGGTTGTACTGGGGGTCCGGGAGCACGAGAGAATTCATTGCTCAATCTAGTACCAGGAGCTTTTGAAAACGTTGGCTGTTGCTGTATTTGTTGCATGTGTTGTTGGAGCGATACTGCTGGACGGGAAATCGGATCCGGGAACCGTGGTGGCTGAGCTACTTCTTGTGGTCTTTGCTGTGGAACTGGAGTATGCTGATGAACTGGGGGTACCGGTTGAACAACTTGAGCAGGTTCACGCCTTGCTGGCGGTGCAATGACACGATCRATTGGCTGTTGAACTGAAGCTGGTGGCGTTTCTGGAATATGATCGATTCGAATGTGTTAAAAAAGCAGATTCAACTTACGGGTTGGTTTGGTGACATTTTCAGTTGCTTGAGGCACACTAGATTGAGCCAAAGACTGGCGGACAGCTGGTGAAGCTGTTTGACGGGCAGGTTGCTGGACTTGAGGTGATGGTGTTGGTTGTTGCTTAGTCTGCGTCTGTGTTGGAGGAGTCTCACCTCTCGCCGCCATTCTCTGTTGCCAAACGTTCGCACCGTCCTTTGTCGCTTGATTTCCATGTGATTTTGAGGATCGGTTACATTGTGAGGGCACTGGAACTGGAGACGACTGGCGAGCGATACTGGCCGACGACAACGAATGGGGAATCGAATGTGTAGAATCCACGGCGCTCTTGGATGTTCCTTCAGAAGAAAGAGATGAAGCAACAGACACATTTCCATGAGTAGCAGTTCGAATCGCATCGTGAATCAGAACATCTTTATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>498 457 45</canonical_bands>
                <polymorphic_bands>543 457</polymorphic_bands>
            </assay>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CGATCG</site>
                <isoschizomers>
                    <enzyme>BspCI</enzyme>
                    <enzyme>Ple19I</enzyme>
                    <enzyme>PvuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>335 306 85 62 59 45 31 25 21 18 8 5</canonical_bands>
                <polymorphic_bands>351 335 85 62 59 31 25 21 18 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGCTACTTCTTGTGGTCTTT</pcr_primer_p1>
		<pcr_primer_p2>AGTCTTTGGCTCAATCTAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAGCTACTTCTTGTGGTCTTTGCTGTGGAACTGGAGTATGCTGATGAACTGGGGGTACCGGTTGAACAACTTGAGCAGGTTCACGCCTTGCTGGCGGTGCAATGACACGATCGATTGGCTGTTGAACTGAAGCTGGTGGCGTTTCTGGAATATGATCGATTCGAATGTGTTAAAAAAGCAGATTCAACTTACGGGTTGGTTTGGTGACATTTTCAGTTGCTTGAGGCACACTAGATTGAGCCAAAGACT</canonical_amplicon>
		<polymorphic_amplicon>TGAGCTACTTCTTGTGGTCTTTGCTGTGGAACTGGAGTATGCTGATGAACTGGGGGTACCGGTTGAACAACTTGAGCAGGTTCACGCCTTGCTGGCGGTGCAATGACACGATCRATTGGCTGTTGAACTGAAGCTGGTGGCGTTTCTGGAATATGATCGATTCGAATGTGTTAAAAAAGCAGATTCAACTTACGGGTTGGTTTGGTGACATTTTCAGTTGCTTGAGGCACACTAGATTGAGCCAAAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33067</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>11569</contig_pos>
        <strand></strand>
        <context>ggtttttttt[G/T]gggattactg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCAAAATGAGCTTAACCGCGACATATCTAGGTCAATTTCGGTTTTTTTT</left_flank>
        <right_flank>GGGATTACTGTACCTTTCGTGGTGGGACCCAACTTTTAAAGGAATATAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAGTCTGAAAAGTTCAAAAATAACCGAATTGTGGCGAAAAATTGATTTTCAAAAAAATTTTAAAGAAAATCTAAAAATTCTTATATCTCCCTTATGTTTCTAAATTTAAACATTAAATTACTAAAATCGTTTTAGGCGTGTCAAGAGCTTCAAAATGAGCCTAAACTCGACATACCTAGGTCAATTTGGAAATTTTCGAGATTACTGTAGTTTTCGTGGTGGTACCCAACTTTCAAAGGAATATAGTCGTGTTTAGGCTCATTTTGAAGCGCTCATCAAACTGAATTGAAATACGATGAGTTCGTTCAAAGAAAATCAAAAATACAAAAATTATGACACAAATTGATTTTTTGAAAATTTTAGGAAATCTTAAATTTCTTATAATTTGCTTATTTTTGGATATTTCTTCATGAAATTTTTTTATTATTTTTCAGCACAGTATGAGCTTCAAAATGAGCTTAACCGCGACATATCTAGGTCAATTTCGGTTTTTTTTGGGGATTACTGTACCTTTCGTGGTGGGACCCAACTTTTAAAGGAATATAGTCGTGTTTAGGCTCATTTTGAAGCTTTCAACAAGCTGAATCCAATTCTAACAAAACCAACCTGTTCAGACCGCGAGAAAACCAATAAATTGGTGTTTGAGTCTAGAAAAGTCTCCAATGGCTCTGTATTTTTCAACTTTTCCTCAACAATATTCAATCCGAGCAAATAAGACGCCACCCGGAGAAAATACGATTTTCGTTGGTCCTTATTTTCAGATGCCATGGTTATTTTTCTGAAAAAAATTGTCCCCAAAATTTTGTATTTTTCTGGAAAATTCTAGAAAATTTAGAATATGAAAATTGGAAATTTGATATTCAGGCTTTGTTTATTTTGTTTCTACGATTATAGGGAAATGGGAAGTTTTTAAAAACAAACAAATTCACTGAGGAAATGCGCTCTAATGATAATTTTCAAAAACCTTTTTTCATTAGAGCGCATTTGCTAAAAATCT</canonical>
            <polymorphic>TTTCAGTCTGAAAAGTTCAAAAATAACCGAATTGTGGCGAAAAATTGATTTTCAAAAAAATTTTAAAGAAAATCTAAAAATTCTTATATCTCCCTTATGTTTCTAAATTTAAACATTAAATTACTAAAATCGTTTTAGGCGTGTCAAGAGCTTCAAAATGAGCCTAAACTCGACATACCTAGGTCAATTTGGAAATTTTCGAGATTACTGTAGTTTTCGTGGTGGTACCCAACTTTCAAAGGAATATAGTCGTGTTTAGGCTCATTTTGAAGCGCTCATCAAACTGAATTGAAATACGATGAGTTCGTTCAAAGAAAATCAAAAATACAAAAATTATGACACAAATTGATTTTTTGAAAATTTTAGGAAATCTTAAATTTCTTATAATTTGCTTATTTTTGGATATTTCTTCATGAAATTTTTTTATTATTTTTCAGCACAGTATGAGCTTCAAAATGAGCTTAACCGCGACATATCTAGGTCAATTTCGGTTTTTTTTKGGGATTACTGTACCTTTCGTGGTGGGACCCAACTTTTAAAGGAATATAGTCGTGTTTAGGCTCATTTTGAAGCTTTCAACAAGCTGAATCCAATTCTAACAAAACCAACCTGTTCAGACCGCGAGAAAACCAATAAATTGGTGTTTGAGTCTAGAAAAGTCTCCAATGGCTCTGTATTTTTCAACTTTTCCTCAACAATATTCAATCCGAGCAAATAAGACGCCACCCGGAGAAAATACGATTTTCGTTGGTCCTTATTTTCAGATGCCATGGTTATTTTTCTGAAAAAAATTGTCCCCAAAATTTTGTATTTTTCTGGAAAATTCTAGAAAATTTAGAATATGAAAATTGGAAATTTGATATTCAGGCTTTGTTTATTTTGTTTCTACGATTATAGGGAAATGGGAAGTTTTTAAAAACAAACAAATTCACTGAGGAAATGCGCTCTAATGATAATTTTCAAAAACCTTTTTTCATTAGAGCGCATTTGCTAAAAATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAAAATTATGACACAAATTGAT</pcr_primer_p1>
		<pcr_primer_p2>GGAGACTTTTCTAGACTCAAACA</pcr_primer_p2>
		<pcr_amplicon_size>338</pcr_amplicon_size>
		<canonical_amplicon>ACAAAAATTATGACACAAATTGATTTTTTGAAAATTTTAGGAAATCTTAAATTTCTTATAATTTGCTTATTTTTGGATATTTCTTCATGAAATTTTTTTATTATTTTTCAGCACAGTATGAGCTTCAAAATGAGCTTAACCGCGACATATCTAGGTCAATTTCGGTTTTTTTTGGGGATTACTGTACCTTTCGTGGTGGGACCCAACTTTTAAAGGAATATAGTCGTGTTTAGGCTCATTTTGAAGCTTTCAACAAGCTGAATCCAATTCTAACAAAACCAACCTGTTCAGACCGCGAGAAAACCAATAAATTGGTGTTTGAGTCTAGAAAAGTCTCC</canonical_amplicon>
		<polymorphic_amplicon>ACAAAAATTATGACACAAATTGATTTTTTGAAAATTTTAGGAAATCTTAAATTTCTTATAATTTGCTTATTTTTGGATATTTCTTCATGAAATTTTTTTATTATTTTTCAGCACAGTATGAGCTTCAAAATGAGCTTAACCGCGACATATCTAGGTCAATTTCGGTTTTTTTTKGGGATTACTGTACCTTTCGTGGTGGGACCCAACTTTTAAAGGAATATAGTCGTGTTTAGGCTCATTTTGAAGCTTTCAACAAGCTGAATCCAATTCTAACAAAACCAACCTGTTCAGACCGCGAGAAAACCAATAAATTGGTGTTTGAGTCTAGAAAAGTCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33068</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>11644</contig_pos>
        <strand></strand>
        <context>ttttgaagct[T/C]tcaacaagct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGACCCAACTTTTAAAGGAATATAGTCGTGTTTAGGCTCATTTTGAAGCT</left_flank>
        <right_flank>TCAACAAGCTGAATCCAATTCTAACAAAACCAACCTGTTCAGACCGCGAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATTCTTATATCTCCCTTATGTTTCTAAATTTAAACATTAAATTACTAAAATCGTTTTAGGCGTGTCAAGAGCTTCAAAATGAGCCTAAACTCGACATACCTAGGTCAATTTGGAAATTTTCGAGATTACTGTAGTTTTCGTGGTGGTACCCAACTTTCAAAGGAATATAGTCGTGTTTAGGCTCATTTTGAAGCGCTCATCAAACTGAATTGAAATACGATGAGTTCGTTCAAAGAAAATCAAAAATACAAAAATTATGACACAAATTGATTTTTTGAAAATTTTAGGAAATCTTAAATTTCTTATAATTTGCTTATTTTTGGATATTTCTTCATGAAATTTTTTTATTATTTTTCAGCACAGTATGAGCTTCAAAATGAGCTTAACCGCGACATATCTAGGTCAATTTCGGTTTTTTTTGGGGATTACTGTACCTTTCGTGGTGGGACCCAACTTTTAAAGGAATATAGTCGTGTTTAGGCTCATTTTGAAGCTTTCAACAAGCTGAATCCAATTCTAACAAAACCAACCTGTTCAGACCGCGAGAAAACCAATAAATTGGTGTTTGAGTCTAGAAAAGTCTCCAATGGCTCTGTATTTTTCAACTTTTCCTCAACAATATTCAATCCGAGCAAATAAGACGCCACCCGGAGAAAATACGATTTTCGTTGGTCCTTATTTTCAGATGCCATGGTTATTTTTCTGAAAAAAATTGTCCCCAAAATTTTGTATTTTTCTGGAAAATTCTAGAAAATTTAGAATATGAAAATTGGAAATTTGATATTCAGGCTTTGTTTATTTTGTTTCTACGATTATAGGGAAATGGGAAGTTTTTAAAAACAAACAAATTCACTGAGGAAATGCGCTCTAATGATAATTTTCAAAAACCTTTTTTCATTAGAGCGCATTTGCTAAAAATCTTTTTTTTATGTTAAAAATTTTTTTGAAGGAAAAACTACTTTTTGCCTTATTTTTCATTCACAAAAAAACGCAAGT</canonical>
            <polymorphic>AAAAATTCTTATATCTCCCTTATGTTTCTAAATTTAAACATTAAATTACTAAAATCGTTTTAGGCGTGTCAAGAGCTTCAAAATGAGCCTAAACTCGACATACCTAGGTCAATTTGGAAATTTTCGAGATTACTGTAGTTTTCGTGGTGGTACCCAACTTTCAAAGGAATATAGTCGTGTTTAGGCTCATTTTGAAGCGCTCATCAAACTGAATTGAAATACGATGAGTTCGTTCAAAGAAAATCAAAAATACAAAAATTATGACACAAATTGATTTTTTGAAAATTTTAGGAAATCTTAAATTTCTTATAATTTGCTTATTTTTGGATATTTCTTCATGAAATTTTTTTATTATTTTTCAGCACAGTATGAGCTTCAAAATGAGCTTAACCGCGACATATCTAGGTCAATTTCGGTTTTTTTTGGGGATTACTGTACCTTTCGTGGTGGGACCCAACTTTTAAAGGAATATAGTCGTGTTTAGGCTCATTTTGAAGCTYTCAACAAGCTGAATCCAATTCTAACAAAACCAACCTGTTCAGACCGCGAGAAAACCAATAAATTGGTGTTTGAGTCTAGAAAAGTCTCCAATGGCTCTGTATTTTTCAACTTTTCCTCAACAATATTCAATCCGAGCAAATAAGACGCCACCCGGAGAAAATACGATTTTCGTTGGTCCTTATTTTCAGATGCCATGGTTATTTTTCTGAAAAAAATTGTCCCCAAAATTTTGTATTTTTCTGGAAAATTCTAGAAAATTTAGAATATGAAAATTGGAAATTTGATATTCAGGCTTTGTTTATTTTGTTTCTACGATTATAGGGAAATGGGAAGTTTTTAAAAACAAACAAATTCACTGAGGAAATGCGCTCTAATGATAATTTTCAAAAACCTTTTTTCATTAGAGCGCATTTGCTAAAAATCTTTTTTTTATGTTAAAAATTTTTTTGAAGGAAAAACTACTTTTTGCCTTATTTTTCATTCACAAAAAAACGCAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAAAATTATGACACAAATTGAT</pcr_primer_p1>
		<pcr_primer_p2>GGAGACTTTTCTAGACTCAAACA</pcr_primer_p2>
		<pcr_amplicon_size>338</pcr_amplicon_size>
		<canonical_amplicon>ACAAAAATTATGACACAAATTGATTTTTTGAAAATTTTAGGAAATCTTAAATTTCTTATAATTTGCTTATTTTTGGATATTTCTTCATGAAATTTTTTTATTATTTTTCAGCACAGTATGAGCTTCAAAATGAGCTTAACCGCGACATATCTAGGTCAATTTCGGTTTTTTTTGGGGATTACTGTACCTTTCGTGGTGGGACCCAACTTTTAAAGGAATATAGTCGTGTTTAGGCTCATTTTGAAGCTTTCAACAAGCTGAATCCAATTCTAACAAAACCAACCTGTTCAGACCGCGAGAAAACCAATAAATTGGTGTTTGAGTCTAGAAAAGTCTCC</canonical_amplicon>
		<polymorphic_amplicon>ACAAAAATTATGACACAAATTGATTTTTTGAAAATTTTAGGAAATCTTAAATTTCTTATAATTTGCTTATTTTTGGATATTTCTTCATGAAATTTTTTTATTATTTTTCAGCACAGTATGAGCTTCAAAATGAGCTTAACCGCGACATATCTAGGTCAATTTCGGTTTTTTTTGGGGATTACTGTACCTTTCGTGGTGGGACCCAACTTTTAAAGGAATATAGTCGTGTTTAGGCTCATTTTGAAGCTYTCAACAAGCTGAATCCAATTCTAACAAAACCAACCTGTTCAGACCGCGAGAAAACCAATAAATTGGTGTTTGAGTCTAGAAAAGTCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33069</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>14689</contig_pos>
        <strand>+</strand>
        <context>AAAATTTTCG[C/T]AAAAAAAGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATAGCTGAAAATTGCGGTTTTCGCAGTCAAAAATGTCAAAATTTTCG</left_flank>
        <right_flank>AAAAAAAGTCGAAAATTGTCTATTTTCCGACTTTTTGGGCTCAGAAATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCCCACCGCAATTATCGCCGTTAATTAGTTCCAAATTGCATTTTTTTTGCGAAATTTCCGTTATTTATGCCGTTTTTTGGGGATTTTTCACCGGATTTTTCGCTATTTTTCAGTGTAAATGTCAAACTGAACGAAATGGCCAATCAGTTTTGTACGGAGAATCGCGATGTCGCGTGCTACTTGGTCACCAAACACTCATGGAAGGGAAAGTGAGGATTTTAATAGGAAAATAGAGGAAAAATGAGCAAAAAATGACCGAAAATAGCGATTTCTGCAGTCAAAAGTGTCAAAAATCCCCTATTTTCCGACTTTTTGGGCTCAGAAATGAGCAAAAAATAGCCGAAAAGAGCAGTTTTTGCAGTCAAAAATGTAACAAATGCATTTAAAACGTTCAAAAAAGTAGAAAGTTGCCTATTTTTCGACTTTCTGGGGTCAGAAATGAGCAAAAAATAGCTGAAAATTGCGGTTTTCGCAGTCAAAAATGTCAAAATTTTCGAAAAAAAAGTCGAAAATTGTCTATTTTCCGACTTTTTGGGCTCAGAAATGAGCAAAAGATGGCCGAAAATAGCGATTTTTGGGCTCGAAAATGTCAGAAAAAAAGAGCTTTTTCTGGCAGAAATTCGAAAAAAAAGTCAGATTTTTTAGTCAAAAATGGGAATTTTCGCGATTTTTAGCCAAATTTAGGTTTTAAAAAAGAGCAAAAATGACAAAAAATTGAAAAAAAACTACCCGTAGAAATGATAAATTTCCAGATACAAACGGGTTTTCTCGATCGGAACGCTGGCATCACAACCTATAATCCCAACTCGTTGGAAATCACTAACCAGGTAGCACTTTTGACTGAAAACTTTGAAATCTGAAGAAAATATGGGAGAAGGCTGATAAAAATTGGTAAAAATTGGTCTAAATTGATCTAAATTCTCATTTTGAAATCTCTGGCTTGAATTACACTGAAAATAGGCAAAAGTTGAGATTTTATGTCTCAAAATGCTGATTT</canonical>
            <polymorphic>TTTTCCCACCGCAATTATCGCCGTTAATTAGTTCCAAATTGCATTTTTTTTGCGAAATTTCCGTTATTTATGCCGTTTTTTGGGGATTTTTCACCGGATTTTTCGCTATTTTTCAGTGTAAATGTCAAACTGAACGAAATGGCCAATCAGTTTTGTACGGAGAATCGCGATGTCGCGTGCTACTTGGTCACCAAACACTCATGGAAGGGAAAGTGAGGATTTTAATAGGAAAATAGAGGAAAAATGAGCAAAAAATGACCGAAAATAGCGATTTCTGCAGTCAAAAGTGTCAAAAATCCCCTATTTTCCGACTTTTTGGGCTCAGAAATGAGCAAAAAATAGCCGAAAAGAGCAGTTTTTGCAGTCAAAAATGTAACAAATGCATTTAAAACGTTCAAAAAAGTAGAAAGTTGCCTATTTTTCGACTTTCTGGGGTCAGAAATGAGCAAAAAATAGCTGAAAATTGCGGTTTTCGCAGTCAAAAATGTCAAAATTTTCGYAAAAAAAGTCGAAAATTGTCTATTTTCCGACTTTTTGGGCTCAGAAATGAGCAAAAGATGGCCGAAAATAGCGATTTTTGGGCTCGAAAATGTCAGAAAAAAAGAGCTTTTTCTGGCAGAAATTCGAAAAAAAAGTCAGATTTTTTAGTCAAAAATGGGAATTTTCGCGATTTTTAGCCAAATTTAGGTTTTAAAAAAGAGCAAAAATGACAAAAAATTGAAAAAAAACTACCCGTAGAAATGATAAATTTCCAGATACAAACGGGTTTTCTCGATCGGAACGCTGGCATCACAACCTATAATCCCAACTCGTTGGAAATCACTAACCAGGTAGCACTTTTGACTGAAAACTTTGAAATCTGAAGAAAATATGGGAGAAGGCTGATAAAAATTGGTAAAAATTGGTCTAAATTGATCTAAATTCTCATTTTGAAATCTCTGGCTTGAATTACACTGAAAATAGGCAAAAGTTGAGATTTTATGTCTCAAAATGCTGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>497 376 127</canonical_bands>
                <polymorphic_bands>624 376</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>423 227 148 75 75 40 12</canonical_bands>
                <polymorphic_bands>423 227 148 87 75 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGCCTATTTTTCGACTTTCT</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTCCCATTTTTGACTAA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TTGCCTATTTTTCGACTTTCTGGGGTCAGAAATGAGCAAAAAATAGCTGAAAATTGCGGTTTTCGCAGTCAAAAATGTCAAAATTTTCGAAAAAAAAGTCGAAAATTGTCTATTTTCCGACTTTTTGGGCTCAGAAATGAGCAAAAGATGGCCGAAAATAGCGATTTTTGGGCTCGAAAATGTCAGAAAAAAAGAGCTTTTTCTGGCAGAAATTCGAAAAAAAAGTCAGATTTTTTAGTCAAAAATGGGAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTGCCTATTTTTCGACTTTCTGGGGTCAGAAATGAGCAAAAAATAGCTGAAAATTGCGGTTTTCGCAGTCAAAAATGTCAAAATTTTCGYAAAAAAAGTCGAAAATTGTCTATTTTCCGACTTTTTGGGCTCAGAAATGAGCAAAAGATGGCCGAAAATAGCGATTTTTGGGCTCGAAAATGTCAGAAAAAAAGAGCTTTTTCTGGCAGAAATTCGAAAAAAAAGTCAGATTTTTTAGTCAAAAATGGGAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33070</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>15017</contig_pos>
        <strand>+</strand>
        <context>AATCACTAAY[C/T]AGGTAGCACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAACGCTGGCATCACAACCTATAATCCCAACTCGTTGGAAATCACTAAC</left_flank>
        <right_flank>AGGTAGCACTTTTGACTGAAAACTTTGAAATCTGAAGAAAATATGGGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGCAAAAAATAGCCGAAAAGAGCAGTTTTTGCAGTCAAAAATGTAACAAATGCATTTAAAACGTTCAAAAAAGTAGAAAGTTGCCTATTTTTCGACTTTCTGGGGTCAGAAATGAGCAAAAAATAGCTGAAAATTGCGGTTTTCGCAGTCAAAAATGTCAAAATTTTCGAAAAAAAAGTCGAAAATTGTCTATTTTCCGACTTTTTGGGCTCAGAAATGAGCAAAAGATGGCCGAAAATAGCGATTTTTGGGCTCGAAAATGTCAGAAAAAAAGAGCTTTTTCTGGCAGAAATTCGAAAAAAAAGTCAGATTTTTTAGTCAAAAATGGGAATTTTCGCGATTTTTAGCCAAATTTAGGTTTTAAAAAAGAGCAAAAATGACAAAAAATTGAAAAAAAACTACCCGTAGAAATGATAAATTTCCAGATACAAACGGGTTTTCTCGATCGGAACGCTGGCATCACAACCTATAATCCCAACTCGTTGGAAATCACTAACCAGGTAGCACTTTTGACTGAAAACTTTGAAATCTGAAGAAAATATGGGAGAAGGCTGATAAAAATTGGTAAAAATTGGTCTAAATTGATCTAAATTCTCATTTTGAAATCTCTGGCTTGAATTACACTGAAAATAGGCAAAAGTTGAGATTTTATGTCTCAAAATGCTGATTTTTGGCTTCAAACTAGCTGGAAAATCGTCAGAAATCACTAAATTTTCATTTTGAAATCTGAAAAATCGGTGAAATGAGCTGGAAAATCATCAAAAATGGCAAAATGCGGACCGAAATTCCACTGAAAATGGGCAAAAATCAAGAATTTTTGACATTTCCAGGTTTTTCAGCTATTTTCAAAACATATTTTTCGATTTTTCTGGTTTTTTTCGTCTGAAATTCTGATGAAACGGTGTCCTGGGTTACTGTAGATTACTGTACAAAGTTTTGTAGTTTTTCTCTGCAAACCCAATCACGTCGAAATGCAGATTTAAAAAAACTCCAAAATA</canonical>
            <polymorphic>TGAGCAAAAAATAGCCGAAAAGAGCAGTTTTTGCAGTCAAAAATGTAACAAATGCATTTAAAACGTTCAAAAAAGTAGAAAGTTGCCTATTTTTCGACTTTCTGGGGTCAGAAATGAGCAAAAAATAGCTGAAAATTGCGGTTTTCGCAGTCAAAAATGTCAAAATTTTCGAAAAAAAAGTCGAAAATTGTCTATTTTCCGACTTTTTGGGCTCAGAAATGAGCAAAAGATGGCCGAAAATAGCGATTTTTGGGCTCGAAAATGTCAGAAAAAAAGAGCTTTTTCTGGCAGAAATTCGAAAAAAAAGTCAGATTTTTTAGTCAAAAATGGGAATTTTCGCGATTTTTAGCCAAATTTAGGTTTTAAAAAAGAGCAAAAATGACAAAAAATTGAAAAAAAACTACCCGTAGAAATGATAAATTTCCAGATACAAACGGGTTTTCTCGATCGGAACGCTGGCATCACAACCTATAATCCCAACTCGTTGGAAATCACTAACYAGGTAGCACTTTTGACTGAAAACTTTGAAATCTGAAGAAAATATGGGAGAAGGCTGATAAAAATTGGTAAAAATTGGTCTAAATTGATCTAAATTCTCATTTTGAAATCTCTGGCTTGAATTACACTGAAAATAGGCAAAAGTTGAGATTTTATGTCTCAAAATGCTGATTTTTGGCTTCAAACTAGCTGGAAAATCGTCAGAAATCACTAAATTTTCATTTTGAAATCTGAAAAATCGGTGAAATGAGCTGGAAAATCATCAAAAATGGCAAAATGCGGACCGAAATTCCACTGAAAATGGGCAAAAATCAAGAATTTTTGACATTTCCAGGTTTTTCAGCTATTTTCAAAACATATTTTTCGATTTTTCTGGTTTTTTTCGTCTGAAATTCTGATGAAACGGTGTCCTGGGTTACTGTAGATTACTGTACAAAGTTTTGTAGTTTTTCTCTGCAAACCCAATCACGTCGAAATGCAGATTTAAAAAAACTCCAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>500 330 91 79</canonical_bands>
                <polymorphic_bands>830 91 79</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>500 330 91 79</canonical_bands>
                <polymorphic_bands>830 91 79</polymorphic_bands>
            </assay>
            <assay>
                <site>ACCWGGT</site>
                <isoschizomers>
                    <enzyme>MabI</enzyme>
                    <enzyme>SexAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTAGCCAAATTTAGGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCAATTTAGACCAATTTTTACCA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTAGCCAAATTTAGGTTTTAAAAAAGAGCAAAAATGACAAAAAATTGAAAAAAAACTACCCGTAGAAATGATAAATTTCCAGATACAAACGGGTTTTCTCGATCGGAACGCTGGCATCACAACCTATAATCCCAACTCGTTGGAAATCACTAACCAGGTAGCACTTTTGACTGAAAACTTTGAAATCTGAAGAAAATATGGGAGAAGGCTGATAAAAATTGGTAAAAATTGGTCTAAATTGA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTAGCCAAATTTAGGTTTTAAAAAAGAGCAAAAATGACAAAAAATTGAAAAAAAACTACCCGTAGAAATGATAAATTTCCAGATACAAACGGGTTTTCTCGATCGGAACGCTGGCATCACAACCTATAATCCCAACTCGTTGGAAATCACTAACYAGGTAGCACTTTTGACTGAAAACTTTGAAATCTGAAGAAAATATGGGAGAAGGCTGATAAAAATTGGTAAAAATTGGTCTAAATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33071</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>46968</contig_pos>
        <strand>+</strand>
        <context>GAAGACGTGC[A/G]TTTCTCTCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTACTGGGACCTGCTTATCTCAGCTCAGACTGGAGATCAGAAGACGTGC</left_flank>
        <right_flank>TTTCTCTCCTAGCTTGTCAGAATCTGGCAAGGAAGCTTCAAATGTCCAGA</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCGAAAGATCAATTCTCTGGATTTAAAGGTTCTAGACGTAGCTGTAAATTCTGGGTCTACTGTATATCTACAAGAAGTTTCTGTTGTCATTAATTTCGCCCATAGTCTTCTAGACGAGCCGAAATTGGTCAAAATGGGTTCTGGAAGGTGTCTTGAGCTCCCAAAATCTTCCAGAAGCTACCAAATGATTCGATGACCAAGTTTACCAAGAGAATGGCTTATCCAAGCCTAAATCTGGATCTCAGAACTCTGAGAGCTGATAGGAAGGTATGCGACGCTTTCCTAGCTTGTCAGAAGTCTTGGCACGGACTCTACAGTAGGTTTCGGTTGTCTTTAAATGGTCAATGGACGCGACTAGATGAGCCAAAATGGTTCTGGAAGGCGTAAGATCGTTCCTCAAGTTTCCAGAAGCTTCCAGTTGCTTCTGAGACCTAGCTAGATCGTTTGTTTTACTGGGACCTGCTTATCTCAGCTCAGACTGGAGATCAGAAGACGTGCGTTTCTCTCCTAGCTTGTCAGAATCTGGCAAGGAAGCTTCAAATGTCCAGATCAGAGGCTGGAGCTGGCTAAACTGCTCCGAGTTCTAGACCCAAAGAATCTGAAGGTCTCCAAGAGCAGAAGGCGTTCGAAGAGATTCTGACAGGTTGACCTGATTCCAGGAGCCAATATCATCTGCCCCTCTTCATCTTCTTCTTCCCTTTTCTCCAATCTTCCTCCCATTCAACACGAAAACCTGAGAGAGCGGCGAGCGGTCGGTGCGGACGGGCGCATCGCATCTCCACTACGTCTCTCTCCCGCCTCCCTGCGTCTCTTCGTCTCATATGATCACTCGCCACATTCGTTGTTCGCCGGGGCGGTCCTGGGTTCTTCTATTGATTCACTCGCACCCTCCGCGCCCCAGAACGTACTCTCGCATTTTTCTCTTCTCTGTCTTTTTTAGTTAGAATTCTTGGTTCAGTTTGGGGTTTTAGACCTTTGGTGCTGGGTGGGCCGGACCAC</canonical>
            <polymorphic>GGCGAAAGATCAATTCTCTGGATTTAAAGGTTCTAGACGTAGCTGTAAATTCTGGGTCTACTGTATATCTACAAGAAGTTTCTGTTGTCATTAATTTCGCCCATAGTCTTCTAGACGAGCCGAAATTGGTCAAAATGGGTTCTGGAAGGTGTCTTGAGCTCCCAAAATCTTCCAGAAGCTACCAAATGATTCGATGACCAAGTTTACCAAGAGAATGGCTTATCCAAGCCTAAATCTGGATCTCAGAACTCTGAGAGCTGATAGGAAGGTATGCGACGCTTTCCTAGCTTGTCAGAAGTCTTGGCACGGACTCTACAGTAGGTTTCGGTTGTCTTTAAATGGTCAATGGACGCGACTAGATGAGCCAAAATGGTTCTGGAAGGCGTAAGATCGTTCCTCAAGTTTCCAGAAGCTTCCAGTTGCTTCTGAGACCTAGCTAGATCGTTTGTTTTACTGGGACCTGCTTATCTCAGCTCAGACTGGAGATCAGAAGACGTGCRTTTCTCTCCTAGCTTGTCAGAATCTGGCAAGGAAGCTTCAAATGTCCAGATCAGAGGCTGGAGCTGGCTAAACTGCTCCGAGTTCTAGACCCAAAGAATCTGAAGGTCTCCAAGAGCAGAAGGCGTTCGAAGAGATTCTGACAGGTTGACCTGATTCCAGGAGCCAATATCATCTGCCCCTCTTCATCTTCTTCTTCCCTTTTCTCCAATCTTCCTCCCATTCAACACGAAAACCTGAGAGAGCGGCGAGCGGTCGGTGCGGACGGGCGCATCGCATCTCCACTACGTCTCTCTCCCGCCTCCCTGCGTCTCTTCGTCTCATATGATCACTCGCCACATTCGTTGTTCGCCGGGGCGGTCCTGGGTTCTTCTATTGATTCACTCGCACCCTCCGCGCCCCAGAACGTACTCTCGCATTTTTCTCTTCTCTGTCTTTTTTAGTTAGAATTCTTGGTTCAGTTTGGGGTTTTAGACCTTTGGTGCTGGGTGGGCCGGACCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCTACAGTAGGTTTCGGTTGT</pcr_primer_p1>
		<pcr_primer_p2>CTCTGATCTGGACATTTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTCTACAGTAGGTTTCGGTTGTCTTTAAATGGTCAATGGACGCGACTAGATGAGCCAAAATGGTTCTGGAAGGCGTAAGATCGTTCCTCAAGTTTCCAGAAGCTTCCAGTTGCTTCTGAGACCTAGCTAGATCGTTTGTTTTACTGGGACCTGCTTATCTCAGCTCAGACTGGAGATCAGAAGACGTGCGTTTCTCTCCTAGCTTGTCAGAATCTGGCAAGGAAGCTTCAAATGTCCAGATCAGAG</canonical_amplicon>
		<polymorphic_amplicon>ACTCTACAGTAGGTTTCGGTTGTCTTTAAATGGTCAATGGACGCGACTAGATGAGCCAAAATGGTTCTGGAAGGCGTAAGATCGTTCCTCAAGTTTCCAGAAGCTTCCAGTTGCTTCTGAGACCTAGCTAGATCGTTTGTTTTACTGGGACCTGCTTATCTCAGCTCAGACTGGAGATCAGAAGACGTGCRTTTCTCTCCTAGCTTGTCAGAATCTGGCAAGGAAGCTTCAAATGTCCAGATCAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33072</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>48556</contig_pos>
        <strand>+</strand>
        <context>TTCTAATTAA[C/T]TATCAAMAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCTCACCCTCTCTCTCTCTCTCTCTCTGCCTTTATCATTTTCTAATTAA</left_flank>
        <right_flank>TATCAATAAATCAAATTTATATATTCCTCTTCTTCTTCTAGAAAACTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGCTGGAGGAGCGAGACGACGACTACGGTAGTTTTATGCCATGGTCTTGAGGCTGTGAAAGTTGCTGCTGGCCCAGAATCCCAAACTAGGCCACCGCCTTTTAGCTGATCTAGCTTTAGCTAGCTAAATTTTGCTCAGGCGAAAACCTAGGCCACAAGCCGATGGCCTAGAATTCCCACGGCCAGGTCGCAATGATACAGTGGCCTAGAATCCGGGAGCTAGAAAAACTAGGTCATCCCGGTCATGCATTTTTCTACCGTACCCCACAAAAAGGGCGGAGCCTATTTTGACACACACACACACACATACAAACACAGAACAACCCATAATTTTGGCTCCTCGCTTTTTCTGCTTCTGCTCAATTTCCTTTGGAAAGTTTAGGCTCCGCCCCTTCTTTCGGTCCTACTGTAGGCTTCATTTTCTCTGCGCTCTCTCATCTCCCCACACTCTCTCACCCTCTCTCTCTCTCTCTCTCTGCCTTTATCATTTTCTAATTAAGTATCAATAAATCAAATTTATATATTCCTCTTCTTCTTCTAGAAAACTTTTTTTTGGGCAGAAGAGACAGTGAGAGAGTGTGAGAGAGCGCAGAGAAAAAAAGAACACAGAGAGAGTGAAAAAAACGCGCACGCAACGCACACGCTTTGCGCGCCGCGTGTGTAGAGAGAGCGAGAGTGTGTGCGAGACGAAGAGACGCAGACACTGCCGTATCTCTCTTCTACTCGTTTTTATCGGTTTTCGCCTTCTCCTTCTAGCCATTTCCCCTATTTTTCTTCTGTTTCTGTTTTTTTTCAGTCCCTTTGTCTTCTAAATATGGGCGGGGCCTAGAAATCCCCCTAGGTGGAATTCTAGGTCATCAAATGCTAAAAGGATTACTGTAGACAATGGAATTCTTGTTAGGATTGGAAGTACCGTAACCCTTATCCTACTACTCGNNNNNNNNNNACCGAATTTTTTCTCTTTTTTCATCGCTTTTCTCTCTCCTCTCCTACAGCACAC</canonical>
            <polymorphic>CCGCTGGAGGAGCGAGACGACGACTACGGTAGTTTTATGCCATGGTCTTGAGGCTGTGAAAGTTGCTGCTGGCCCAGAATCCCAAACTAGGCCACCGCCTTTTAGCTGATCTAGCTTTAGCTAGCTAAATTTTGCTCAGGCGAAAACCTAGGCCACAAGCCGATGGCCTAGAATTCCCACGGCCAGGTCGCAATGATACAGTGGCCTAGAATCCGGGAGCTAGAAAAACTAGGTCATCCCGGTCATGCATTTTTCTACCGTACCCCACAAAAAGGGCGGAGCCTATTTTGACACACACACACACACATACAAACACAGAACAACCCATAATTTTGGCTCCTCGCTTTTTCTGCTTCTGCTCAATTTCCTTTGGAAAGTTTAGGCTCCGCCCCTTCTTTCGGTCCTACTGTAGGCTTCATTTTCTCTGCGCTCTCTCATCTCCCCACACTCTCTCACCCTCTCTCTCTCTCTCTCTCTGCCTTTATCATTTTCTAATTAAYTATCAATAAATCAAATTTATATATTCCTCTTCTTCTTCTAGAAAACTTTTTTTTGGGCAGAAGAGACAGTGAGAGAGTGTGAGAGAGCGCAGAGAAAAAAAGAACACAGAGAGAGTGAAAAAAACGCGCACGCAACGCACACGCTTTGCGCGCCGCGTGTGTAGAGAGAGCGAGAGTGTGTGCGAGACGAAGAGACGCAGACACTGCCGTATCTCTCTTCTACTCGTTTTTATCGGTTTTCGCCTTCTCCTTCTAGCCATTTCCCCTATTTTTCTTCTGTTTCTGTTTTTTTTCAGTCCCTTTGTCTTCTAAATATGGGCGGGGCCTAGAAATCCCCCTAGGTGGAATTCTAGGTCATCAAATGCTAAAAGGATTACTGTAGACAATGGAATTCTTGTTAGGATTGGAAGTACCGTAACCCTTATCCTACTACTCGNNNNNNNNNNACCGAATTTTTTCTCTTTTTTCATCGCTTTTCTCTCTCCTCTCCTACAGCACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTGTAGGCTTCATTTTCTCTG</pcr_primer_p1>
		<pcr_primer_p2>GTAGAAGAGAGATACGGCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>319</pcr_amplicon_size>
		<canonical_amplicon>TACTGTAGGCTTCATTTTCTCTGCGCTCTCTCATCTCCCCACACTCTCTCACCCTCTCTCTCTCTCTCTCTCTGCCTTTATCATTTTCTAATTAAGTATCAATAAATCAAATTTATATATTCCTCTTCTTCTTCTAGAAAACTTTTTTTTGGGCAGAAGAGACAGTGAGAGAGTGTGAGAGAGCGCAGAGAAAAAAAGAACACAGAGAGAGTGAAAAAAACGCGCACGCAACGCACACGCTTTGCGCGCCGCGTGTGTAGAGAGAGCGAGAGTGTGTGCGAGACGAAGAGACGCAGACACTGCCGTATCTCTCTTCTAC</canonical_amplicon>
		<polymorphic_amplicon>TACTGTAGGCTTCATTTTCTCTGCGCTCTCTCATCTCCCCACACTCTCTCACCCTCTCTCTCTCTCTCTCTCTGCCTTTATCATTTTCTAATTAAYTATCAATAAATCAAATTTATATATTCCTCTTCTTCTTCTAGAAAACTTTTTTTTGGGCAGAAGAGACAGTGAGAGAGTGTGAGAGAGCGCAGAGAAAAAAAGAACACAGAGAGAGTGAAAAAAACGCGCACGCAACGCACACGCTTTGCGCGCCGCGTGTGTAGAGAGAGCGAGAGTGTGTGCGAGACGAAGAGACGCAGACACTGCCGTATCTCTCTTCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33073</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>48563</contig_pos>
        <strand>+</strand>
        <context>TAAYTATCAA[A/C]AAATCAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCTCTCTCTCTCTCTCTCTCTGCCTTTATCATTTTCTAATTAAGTATCAA</left_flank>
        <right_flank>AAATCAAATTTATATATTCCTCTTCTTCTTCTAGAAAACTTTTTTTTGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGAGCGAGACGACGACTACGGTAGTTTTATGCCATGGTCTTGAGGCTGTGAAAGTTGCTGCTGGCCCAGAATCCCAAACTAGGCCACCGCCTTTTAGCTGATCTAGCTTTAGCTAGCTAAATTTTGCTCAGGCGAAAACCTAGGCCACAAGCCGATGGCCTAGAATTCCCACGGCCAGGTCGCAATGATACAGTGGCCTAGAATCCGGGAGCTAGAAAAACTAGGTCATCCCGGTCATGCATTTTTCTACCGTACCCCACAAAAAGGGCGGAGCCTATTTTGACACACACACACACACATACAAACACAGAACAACCCATAATTTTGGCTCCTCGCTTTTTCTGCTTCTGCTCAATTTCCTTTGGAAAGTTTAGGCTCCGCCCCTTCTTTCGGTCCTACTGTAGGCTTCATTTTCTCTGCGCTCTCTCATCTCCCCACACTCTCTCACCCTCTCTCTCTCTCTCTCTCTGCCTTTATCATTTTCTAATTAAGTATCAATAAATCAAATTTATATATTCCTCTTCTTCTTCTAGAAAACTTTTTTTTGGGCAGAAGAGACAGTGAGAGAGTGTGAGAGAGCGCAGAGAAAAAAAGAACACAGAGAGAGTGAAAAAAACGCGCACGCAACGCACACGCTTTGCGCGCCGCGTGTGTAGAGAGAGCGAGAGTGTGTGCGAGACGAAGAGACGCAGACACTGCCGTATCTCTCTTCTACTCGTTTTTATCGGTTTTCGCCTTCTCCTTCTAGCCATTTCCCCTATTTTTCTTCTGTTTCTGTTTTTTTTCAGTCCCTTTGTCTTCTAAATATGGGCGGGGCCTAGAAATCCCCCTAGGTGGAATTCTAGGTCATCAAATGCTAAAAGGATTACTGTAGACAATGGAATTCTTGTTAGGATTGGAAGTACCGTAACCCTTATCCTACTACTCGNNNNNNNNNNACCGAATTTTTTCTCTTTTTTCATCGCTTTTCTCTCTCCTCTCCTACAGCACACCAAACTC</canonical>
            <polymorphic>AGGAGCGAGACGACGACTACGGTAGTTTTATGCCATGGTCTTGAGGCTGTGAAAGTTGCTGCTGGCCCAGAATCCCAAACTAGGCCACCGCCTTTTAGCTGATCTAGCTTTAGCTAGCTAAATTTTGCTCAGGCGAAAACCTAGGCCACAAGCCGATGGCCTAGAATTCCCACGGCCAGGTCGCAATGATACAGTGGCCTAGAATCCGGGAGCTAGAAAAACTAGGTCATCCCGGTCATGCATTTTTCTACCGTACCCCACAAAAAGGGCGGAGCCTATTTTGACACACACACACACACATACAAACACAGAACAACCCATAATTTTGGCTCCTCGCTTTTTCTGCTTCTGCTCAATTTCCTTTGGAAAGTTTAGGCTCCGCCCCTTCTTTCGGTCCTACTGTAGGCTTCATTTTCTCTGCGCTCTCTCATCTCCCCACACTCTCTCACCCTCTCTCTCTCTCTCTCTCTGCCTTTATCATTTTCTAATTAAGTATCAAMAAATCAAATTTATATATTCCTCTTCTTCTTCTAGAAAACTTTTTTTTGGGCAGAAGAGACAGTGAGAGAGTGTGAGAGAGCGCAGAGAAAAAAAGAACACAGAGAGAGTGAAAAAAACGCGCACGCAACGCACACGCTTTGCGCGCCGCGTGTGTAGAGAGAGCGAGAGTGTGTGCGAGACGAAGAGACGCAGACACTGCCGTATCTCTCTTCTACTCGTTTTTATCGGTTTTCGCCTTCTCCTTCTAGCCATTTCCCCTATTTTTCTTCTGTTTCTGTTTTTTTTCAGTCCCTTTGTCTTCTAAATATGGGCGGGGCCTAGAAATCCCCCTAGGTGGAATTCTAGGTCATCAAATGCTAAAAGGATTACTGTAGACAATGGAATTCTTGTTAGGATTGGAAGTACCGTAACCCTTATCCTACTACTCGNNNNNNNNNNACCGAATTTTTTCTCTTTTTTCATCGCTTTTCTCTCTCCTCTCCTACAGCACACCAAACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTGTAGGCTTCATTTTCTCTG</pcr_primer_p1>
		<pcr_primer_p2>GTAGAAGAGAGATACGGCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>319</pcr_amplicon_size>
		<canonical_amplicon>TACTGTAGGCTTCATTTTCTCTGCGCTCTCTCATCTCCCCACACTCTCTCACCCTCTCTCTCTCTCTCTCTCTGCCTTTATCATTTTCTAATTAAGTATCAATAAATCAAATTTATATATTCCTCTTCTTCTTCTAGAAAACTTTTTTTTGGGCAGAAGAGACAGTGAGAGAGTGTGAGAGAGCGCAGAGAAAAAAAGAACACAGAGAGAGTGAAAAAAACGCGCACGCAACGCACACGCTTTGCGCGCCGCGTGTGTAGAGAGAGCGAGAGTGTGTGCGAGACGAAGAGACGCAGACACTGCCGTATCTCTCTTCTAC</canonical_amplicon>
		<polymorphic_amplicon>TACTGTAGGCTTCATTTTCTCTGCGCTCTCTCATCTCCCCACACTCTCTCACCCTCTCTCTCTCTCTCTCTCTGCCTTTATCATTTTCTAATTAAGTATCAAMAAATCAAATTTATATATTCCTCTTCTTCTTCTAGAAAACTTTTTTTTGGGCAGAAGAGACAGTGAGAGAGTGTGAGAGAGCGCAGAGAAAAAAAGAACACAGAGAGAGTGAAAAAAACGCGCACGCAACGCACACGCTTTGCGCGCCGCGTGTGTAGAGAGAGCGAGAGTGTGTGCGAGACGAAGAGACGCAGACACTGCCGTATCTCTCTTCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33074</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>59731</contig_pos>
        <strand></strand>
        <context>ccttgccagg[C/A]gcttcaagat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTGGATCTGAGTTGTTTGAAACATATATTTTTGAATTTGCCTTGCCAGG</left_flank>
        <right_flank>GCTTCAAGATGAGTATAAACACGACTAGTTTTAGAAGATTTTGAGGATTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAAAAAGAAGAAAGAAAGAAAACATGATTATCACAGAGAAAGTGCGGTGTTGGGAGAGGGAAGAGAGAAAAAAAGAAAAAAAGAAAAAAAATCGATAATCGATTTTCTCAAATGTACTGTGGTTGTTCTTGACCCGTTAACAATCGGAACATTGACGTCGGCATCGTCTTCATATGAATTTCTCCAACCGCCGTGGCGAGCATATTCACAATTCTGAAAAATTATCGATTTTTCAGAATTATCGATTTTTTAGCCTCACCTATCATGTGCCACCGCTACCACCGACGTGCCGTTGATTTCGATGATTCGGTGTCCGACGCGAATTCCTCCGCGTTCAGCGATACCGCCTAAAATGTTTGATTAAGACTTTGTACAGTAATTAATTACAGTAATCCGTAAGTTAAAGGCAACGTTTTCTTAACTTTGCTAAGATCACAACTCATTAAATTTGGATCTGAGTTGTTTGAAACATATATTTTTGAATTTGCCTTGCCAGGCGCTTCAAGATGAGTATAAACACGACTAGTTTTAGAAGATTTTGAGGATTACTGTAGTTTTCGTGGTGGGACCCAATTTTGTAATTTCAGGCGTGTTTATACTCATTTTGAAGTTCACAATGAACAAAATTGAACAAAAAAAGTTTTACTCAAATTGAGTCAAAACCAAGCGAGTTATGATCTATTTCATTTTGAAATTTGTGAAAAATTCAAATTTTCAAAATATCTCAGTAATTTTTGGCACAGTTTGAAGAAAATTAATTTTTTCAGATTTCGCTTGTTACGAGCTTCAAAATGAGTATTTTTCAAATAGCTACTTTCCAAAAAGTTTGAGGATTATTGTAGTTTTCGCGGTGGGACCCAATTTTATAAGTCTAGGTGTGTTTATACTTATTTTGAAGCTCTTAGCGCGCCAAATTCAAATTTAAAAATTTCAAAGTTTCCTTACCTCTCAATAAAGAGCAAATGACACCGTTTTGCACAGAGAATCCCAACTGGTAT</canonical>
            <polymorphic>GAGAAAAAGAAGAAAGAAAGAAAACATGATTATCACAGAGAAAGTGCGGTGTTGGGAGAGGGAAGAGAGAAAAAAAGAAAAAAAGAAAAAAAATCGATAATCGATTTTCTCAAATGTACTGTGGTTGTTCTTGACCCGTTAACAATCGGAACATTGACGTCGGCATCGTCTTCATATGAATTTCTCCAACCGCCGTGGCGAGCATATTCACAATTCTGAAAAATTATCGATTTTTCAGAATTATCGATTTTTTAGCCTCACCTATCATGTGCCACCGCTACCACCGACGTGCCGTTGATTTCGATGATTCGGTGTCCGACGCGAATTCCTCCGCGTTCAGCGATACCGCCTAAAATGTTTGATTAAGACTTTGTACAGTAATTAATTACAGTAATCCGTAAGTTAAAGGCAACGTTTTCTTAACTTTGCTAAGATCACAACTCATTAAATTTGGATCTGAGTTGTTTGAAACATATATTTTTGAATTTGCCTTGCCAGGMGCTTCAAGATGAGTATAAACACGACTAGTTTTAGAAGATTTTGAGGATTACTGTAGTTTTCGTGGTGGGACCCAATTTTGTAATTTCAGGCGTGTTTATACTCATTTTGAAGTTCACAATGAACAAAATTGAACAAAAAAAGTTTTACTCAAATTGAGTCAAAACCAAGCGAGTTATGATCTATTTCATTTTGAAATTTGTGAAAAATTCAAATTTTCAAAATATCTCAGTAATTTTTGGCACAGTTTGAAGAAAATTAATTTTTTCAGATTTCGCTTGTTACGAGCTTCAAAATGAGTATTTTTCAAATAGCTACTTTCCAAAAAGTTTGAGGATTATTGTAGTTTTCGCGGTGGGACCCAATTTTATAAGTCTAGGTGTGTTTATACTTATTTTGAAGCTCTTAGCGCGCCAAATTCAAATTTAAAAATTTCAAAGTTTCCTTACCTCTCAATAAAGAGCAAATGACACCGTTTTGCACAGAGAATCCCAACTGGTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 408 89 2</canonical_bands>
                <polymorphic_bands>909 89 2</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACGTTTTCTTAACTTTGCTA</pcr_primer_p1>
		<pcr_primer_p2>CATTTGCTCTTTATTGAGAGGT</pcr_primer_p2>
		<pcr_amplicon_size>558</pcr_amplicon_size>
		<canonical_amplicon>CAACGTTTTCTTAACTTTGCTAAGATCACAACTCATTAAATTTGGATCTGAGTTGTTTGAAACATATATTTTTGAATTTGCCTTGCCAGGCGCTTCAAGATGAGTATAAACACGACTAGTTTTAGAAGATTTTGAGGATTACTGTAGTTTTCGTGGTGGGACCCAATTTTGTAATTTCAGGCGTGTTTATACTCATTTTGAAGTTCACAATGAACAAAATTGAACAAAAAAAGTTTTACTCAAATTGAGTCAAAACCAAGCGAGTTATGATCTATTTCATTTTGAAATTTGTGAAAAATTCAAATTTTCAAAATATCTCAGTAATTTTTGGCACAGTTTGAAGAAAATTAATTTTTTCAGATTTCGCTTGTTACGAGCTTCAAAATGAGTATTTTTCAAATAGCTACTTTCCAAAAAGTTTGAGGATTATTGTAGTTTTCGCGGTGGGACCCAATTTTATAAGTCTAGGTGTGTTTATACTTATTTTGAAGCTCTTAGCGCGCCAAATTCAAATTTAAAAATTTCAAAGTTTCCTTACCTCTCAATAAAGAGCAAATG</canonical_amplicon>
		<polymorphic_amplicon>CAACGTTTTCTTAACTTTGCTAAGATCACAACTCATTAAATTTGGATCTGAGTTGTTTGAAACATATATTTTTGAATTTGCCTTGCCAGGMGCTTCAAGATGAGTATAAACACGACTAGTTTTAGAAGATTTTGAGGATTACTGTAGTTTTCGTGGTGGGACCCAATTTTGTAATTTCAGGCGTGTTTATACTCATTTTGAAGTTCACAATGAACAAAATTGAACAAAAAAAGTTTTACTCAAATTGAGTCAAAACCAAGCGAGTTATGATCTATTTCATTTTGAAATTTGTGAAAAATTCAAATTTTCAAAATATCTCAGTAATTTTTGGCACAGTTTGAAGAAAATTAATTTTTTCAGATTTCGCTTGTTACGAGCTTCAAAATGAGTATTTTTCAAATAGCTACTTTCCAAAAAGTTTGAGGATTATTGTAGTTTTCGCGGTGGGACCCAATTTTATAAGTCTAGGTGTGTTTATACTTATTTTGAAGCTCTTAGCGCGCCAAATTCAAATTTAAAAATTTCAAAGTTTCCTTACCTCTCAATAAAGAGCAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33075</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>59856</contig_pos>
        <strand></strand>
        <context>cacaatgaac[A/C]aaattgaaca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTTGTAATTTCAGGCGTGTTTATACTCATTTTGAAGTTCACAATGAAC</left_flank>
        <right_flank>AAATTGAACAAAAAAAGTTTTACTCAAATTGAGTCAAAACCAAGCGAGTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTCTTGACCCGTTAACAATCGGAACATTGACGTCGGCATCGTCTTCATATGAATTTCTCCAACCGCCGTGGCGAGCATATTCACAATTCTGAAAAATTATCGATTTTTCAGAATTATCGATTTTTTAGCCTCACCTATCATGTGCCACCGCTACCACCGACGTGCCGTTGATTTCGATGATTCGGTGTCCGACGCGAATTCCTCCGCGTTCAGCGATACCGCCTAAAATGTTTGATTAAGACTTTGTACAGTAATTAATTACAGTAATCCGTAAGTTAAAGGCAACGTTTTCTTAACTTTGCTAAGATCACAACTCATTAAATTTGGATCTGAGTTGTTTGAAACATATATTTTTGAATTTGCCTTGCCAGGCGCTTCAAGATGAGTATAAACACGACTAGTTTTAGAAGATTTTGAGGATTACTGTAGTTTTCGTGGTGGGACCCAATTTTGTAATTTCAGGCGTGTTTATACTCATTTTGAAGTTCACAATGAACAAAATTGAACAAAAAAAGTTTTACTCAAATTGAGTCAAAACCAAGCGAGTTATGATCTATTTCATTTTGAAATTTGTGAAAAATTCAAATTTTCAAAATATCTCAGTAATTTTTGGCACAGTTTGAAGAAAATTAATTTTTTCAGATTTCGCTTGTTACGAGCTTCAAAATGAGTATTTTTCAAATAGCTACTTTCCAAAAAGTTTGAGGATTATTGTAGTTTTCGCGGTGGGACCCAATTTTATAAGTCTAGGTGTGTTTATACTTATTTTGAAGCTCTTAGCGCGCCAAATTCAAATTTAAAAATTTCAAAGTTTCCTTACCTCTCAATAAAGAGCAAATGACACCGTTTTGCACAGAGAATCCCAACTGGTATTTGGTATCCGGTCGTCGTATCCTAACCTCCACCACGGGCGGCGTAGACACTACCGTCATCCGGACCGCCGTCGCAGTTTTCATATTCTTGATTTGCGTCTGAGCAGCTGATAATGGCAATCCAAC</canonical>
            <polymorphic>TGTTCTTGACCCGTTAACAATCGGAACATTGACGTCGGCATCGTCTTCATATGAATTTCTCCAACCGCCGTGGCGAGCATATTCACAATTCTGAAAAATTATCGATTTTTCAGAATTATCGATTTTTTAGCCTCACCTATCATGTGCCACCGCTACCACCGACGTGCCGTTGATTTCGATGATTCGGTGTCCGACGCGAATTCCTCCGCGTTCAGCGATACCGCCTAAAATGTTTGATTAAGACTTTGTACAGTAATTAATTACAGTAATCCGTAAGTTAAAGGCAACGTTTTCTTAACTTTGCTAAGATCACAACTCATTAAATTTGGATCTGAGTTGTTTGAAACATATATTTTTGAATTTGCCTTGCCAGGCGCTTCAAGATGAGTATAAACACGACTAGTTTTAGAAGATTTTGAGGATTACTGTAGTTTTCGTGGTGGGACCCAATTTTGTAATTTCAGGCGTGTTTATACTCATTTTGAAGTTCACAATGAACMAAATTGAACAAAAAAAGTTTTACTCAAATTGAGTCAAAACCAAGCGAGTTATGATCTATTTCATTTTGAAATTTGTGAAAAATTCAAATTTTCAAAATATCTCAGTAATTTTTGGCACAGTTTGAAGAAAATTAATTTTTTCAGATTTCGCTTGTTACGAGCTTCAAAATGAGTATTTTTCAAATAGCTACTTTCCAAAAAGTTTGAGGATTATTGTAGTTTTCGCGGTGGGACCCAATTTTATAAGTCTAGGTGTGTTTATACTTATTTTGAAGCTCTTAGCGCGCCAAATTCAAATTTAAAAATTTCAAAGTTTCCTTACCTCTCAATAAAGAGCAAATGACACCGTTTTGCACAGAGAATCCCAACTGGTATTTGGTATCCGGTCGTCGTATCCTAACCTCCACCACGGGCGGCGTAGACACTACCGTCATCCGGACCGCCGTCGCAGTTTTCATATTCTTGATTTGCGTCTGAGCAGCTGATAATGGCAATCCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACGTTTTCTTAACTTTGCTA</pcr_primer_p1>
		<pcr_primer_p2>CATTTGCTCTTTATTGAGAGGT</pcr_primer_p2>
		<pcr_amplicon_size>558</pcr_amplicon_size>
		<canonical_amplicon>CAACGTTTTCTTAACTTTGCTAAGATCACAACTCATTAAATTTGGATCTGAGTTGTTTGAAACATATATTTTTGAATTTGCCTTGCCAGGCGCTTCAAGATGAGTATAAACACGACTAGTTTTAGAAGATTTTGAGGATTACTGTAGTTTTCGTGGTGGGACCCAATTTTGTAATTTCAGGCGTGTTTATACTCATTTTGAAGTTCACAATGAACAAAATTGAACAAAAAAAGTTTTACTCAAATTGAGTCAAAACCAAGCGAGTTATGATCTATTTCATTTTGAAATTTGTGAAAAATTCAAATTTTCAAAATATCTCAGTAATTTTTGGCACAGTTTGAAGAAAATTAATTTTTTCAGATTTCGCTTGTTACGAGCTTCAAAATGAGTATTTTTCAAATAGCTACTTTCCAAAAAGTTTGAGGATTATTGTAGTTTTCGCGGTGGGACCCAATTTTATAAGTCTAGGTGTGTTTATACTTATTTTGAAGCTCTTAGCGCGCCAAATTCAAATTTAAAAATTTCAAAGTTTCCTTACCTCTCAATAAAGAGCAAATG</canonical_amplicon>
		<polymorphic_amplicon>CAACGTTTTCTTAACTTTGCTAAGATCACAACTCATTAAATTTGGATCTGAGTTGTTTGAAACATATATTTTTGAATTTGCCTTGCCAGGCGCTTCAAGATGAGTATAAACACGACTAGTTTTAGAAGATTTTGAGGATTACTGTAGTTTTCGTGGTGGGACCCAATTTTGTAATTTCAGGCGTGTTTATACTCATTTTGAAGTTCACAATGAACMAAATTGAACAAAAAAAGTTTTACTCAAATTGAGTCAAAACCAAGCGAGTTATGATCTATTTCATTTTGAAATTTGTGAAAAATTCAAATTTTCAAAATATCTCAGTAATTTTTGGCACAGTTTGAAGAAAATTAATTTTTTCAGATTTCGCTTGTTACGAGCTTCAAAATGAGTATTTTTCAAATAGCTACTTTCCAAAAAGTTTGAGGATTATTGTAGTTTTCGCGGTGGGACCCAATTTTATAAGTCTAGGTGTGTTTATACTTATTTTGAAGCTCTTAGCGCGCCAAATTCAAATTTAAAAATTTCAAAGTTTCCTTACCTCTCAATAAAGAGCAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33076</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>65690</contig_pos>
        <strand>+</strand>
        <context>CAAAAAATCC[A/G]AAAAAGGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGAAATTGAGAACCTTTAAAAATAAAGATTCCAAATTTTCAAAAAATCC</left_flank>
        <right_flank>AAAAAGGAAAAAAGTTCCGGAAATATTTCTCCGGCTTTCCTCAGATTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCTGCAGAGAAAACCGTTTTAATGGAAAAATCCGTTTTAAAAGATAAATTGGGGACCGGAAATTAAGAGAATTTCATTACTTTTTTGGAAGGAGAAAATGCTCAAGCGCATCAATCTATCTTGAAAAGCGGCAAAACGGCACGCCTTTCTCTATGCTTTCCACTCTCTTTCCTCGTTGGTGGTGGTGTGGCGCAGTGGTAGCGCGCTTGCGTTTTGAGGTAGAGGCCAAGGGTTCGAACCCATCCGAGCTTTTTTCTTTTTTCTTCTTTTTCAGGACATGGGAATAAGGTTTTAATCAATTTTAGGGAAATAAAGATTATTTAGGTTTATGTGAGTTTGTGAAAATTGGCGGGCCATCTGCTGGGAAACTAAAAAATCCAAAAATGTTGAAAAGTCATTATTTCTATTAAAAAAAAAGATCAATATTTCTCTAGAAAATCTGAAATCTGAAATTGAGAACCTTTAAAAATAAAGATTCCAAATTTTCAAAAAATCCAAAAAAGGAAAAAAGTTCCGGAAATATTTCTCCGGCTTTCCTCAGATTTTTCTCCAGCTATACATCTTTTTCTCAAGGGTGTCATTATTTCCTTTTTCTGCTTTTCTTTATATACTACACTCATTTTTATATCGCATTATCATAAGTTTGGAACTTTTTTAAAAAGAGTTCCAAACTCGAAAAATTGTAAAAACTTGAGATTTGGTTTGTAGAAAGAACTCTACTATGGATAACTATTCTAAAAAGAAGCAAAAAAAAAGTTTGGACCTTATGGTCCTCGATGGGGTTCGAACCCGCGAGCCATGGCTTCAAAACCAAAGTCGCTAGTCACCACACCACGCGCTACACACTTTCTCCCTATGCCGCAAGGCATATACAACATACCTCCTCCTCGGAAGTCCTTTGCTCCCTCTGCATCTTTTTGAGGTACGAATCCCGAAGAACCCATACTGGATCCTCGGTTCCAGATGACGTGGATGGTGCTCCATTAGGTGTTCCGTT</canonical>
            <polymorphic>TTTCCTGCAGAGAAAACCGTTTTAATGGAAAAATCCGTTTTAAAAGATAAATTGGGGACCGGAAATTAAGAGAATTTCATTACTTTTTTGGAAGGAGAAAATGCTCAAGCGCATCAATCTATCTTGAAAAGCGGCAAAACGGCACGCCTTTCTCTATGCTTTCCACTCTCTTTCCTCGTTGGTGGTGGTGTGGCGCAGTGGTAGCGCGCTTGCGTTTTGAGGTAGAGGCCAAGGGTTCGAACCCATCCGAGCTTTTTTCTTTTTTCTTCTTTTTCAGGACATGGGAATAAGGTTTTAATCAATTTTAGGGAAATAAAGATTATTTAGGTTTATGTGAGTTTGTGAAAATTGGCGGGCCATCTGCTGGGAAACTAAAAAATCCAAAAATGTTGAAAAGTCATTATTTCTATTAAAAAAAAAGATCAATATTTCTCTAGAAAATCTGAAATCTGAAATTGAGAACCTTTAAAAATAAAGATTCCAAATTTTCAAAAAATCCRAAAAAGGAAAAAAGTTCCGGAAATATTTCTCCGGCTTTCCTCAGATTTTTCTCCAGCTATACATCTTTTTCTCAAGGGTGTCATTATTTCCTTTTTCTGCTTTTCTTTATATACTACACTCATTTTTATATCGCATTATCATAAGTTTGGAACTTTTTTAAAAAGAGTTCCAAACTCGAAAAATTGTAAAAACTTGAGATTTGGTTTGTAGAAAGAACTCTACTATGGATAACTATTCTAAAAAGAAGCAAAAAAAAAGTTTGGACCTTATGGTCCTCGATGGGGTTCGAACCCGCGAGCCATGGCTTCAAAACCAAAGTCGCTAGTCACCACACCACGCGCTACACACTTTCTCCCTATGCCGCAAGGCATATACAACATACCTCCTCCTCGGAAGTCCTTTGCTCCCTCTGCATCTTTTTGAGGTACGAATCCCGAAGAACCCATACTGGATCCTCGGTTCCAGATGACGTGGATGGTGCTCCATTAGGTGTTCCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGTTTATGTGAGTTTGTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAAAAGATGTATAGCTGGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGGTTTATGTGAGTTTGTGAAAATTGGCGGGCCATCTGCTGGGAAACTAAAAAATCCAAAAATGTTGAAAAGTCATTATTTCTATTAAAAAAAAAGATCAATATTTCTCTAGAAAATCTGAAATCTGAAATTGAGAACCTTTAAAAATAAAGATTCCAAATTTTCAAAAAATCCAAAAAAGGAAAAAAGTTCCGGAAATATTTCTCCGGCTTTCCTCAGATTTTTCTCCAGCTATACATCTTTTTC</canonical_amplicon>
		<polymorphic_amplicon>AGGTTTATGTGAGTTTGTGAAAATTGGCGGGCCATCTGCTGGGAAACTAAAAAATCCAAAAATGTTGAAAAGTCATTATTTCTATTAAAAAAAAAGATCAATATTTCTCTAGAAAATCTGAAATCTGAAATTGAGAACCTTTAAAAATAAAGATTCCAAATTTTCAAAAAATCCRAAAAAGGAAAAAAGTTCCGGAAATATTTCTCCGGCTTTCCTCAGATTTTTCTCCAGCTATACATCTTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33077</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>67968</contig_pos>
        <strand></strand>
        <context>gcttgaaact[G/T]atatttttaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTTTAATGTCCATAACTCAAACCATTTTGATCGTTTTCGCTTGAAACT</left_flank>
        <right_flank>ATATTTTTAAATTTGTCTTGTCAAGCGCTTCAAAATGAGTATAAACAAAG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAGCGTAGTTGGTTTAGAGACTCCTTTGGAGCTGGCTTCTCAACCACAGCAGGTGCGGTATACGGTAGACCGCTCTGGAAAAGTGTTGATCAGGCGGGAATTCAATTTTTGTTTCGAAAATCGCACAACAACAGCAATAGAATAGGAAAACTCGCTTCATAGATAATAAGTTAAAAGGTGCACAACGGGTTAGTACATGCGGGAACTTGTGCTCCATTGATAAACATTCGCGATGGAGCACAATTGAGACAATCACAACGAGATGTGGTACCTTCTCGGAGAACGGTGAAAAATCGTCGGCGGTTAGTTGAGTGATGGGTTTCGATGCTCCGATGAGCTCCGCCAAACTGTCGTCGTCGATCTGCATAGATAGGGGTAGTGTAGAAGGGGTTAAGAAACCGAAAATTTTCCCGAAAAACCCATAAGCGATTTGTTAGACCTTAAACATTTTTTAATGTCCATAACTCAAACCATTTTGATCGTTTTCGCTTGAAACTGATATTTTTAAATTTGTCTTGTCAAGCGCTTCAAAATGAGTATAAACAAAGCTAGCTTTGAAAGAGTTAGCGGGTTACTGTAGTTTTCGCGGTGGGACCCATTTTTCTAAACATAGGCGTGTTTATACTCATTTTGAAGCTCACAATCAGCCAAATCAAACAAAATAAGTTTCACTCAAATTGAGTCAAAACCAAGCGAGTTATGGTCATTTGAATTTTGAAAATCAGCGAACATTCAAATTTGTTCAATATCTCCGTTGGTTTTGGCTCAATTCGAATGAATTTAAATTTTTTGAATTGGCTTGTTCATACGCTTCAAAATGAGTATAAACACGGCTAGTTTCGGAAGAGTTTCAGGGCTACTGTAGTTTTCGTGGTGGGACCCACTTTTCTAAACAAAGGCTTGTTTATACTCATTTTGAAGCTATTGACTTGCTGAATTGAAAAATATAAGTATGATGAGTTTCCGACTGAGTTTATCCAAGTTATGGTACTTTTAAA</canonical>
            <polymorphic>ATGAGCGTAGTTGGTTTAGAGACTCCTTTGGAGCTGGCTTCTCAACCACAGCAGGTGCGGTATACGGTAGACCGCTCTGGAAAAGTGTTGATCAGGCGGGAATTCAATTTTTGTTTCGAAAATCGCACAACAACAGCAATAGAATAGGAAAACTCGCTTCATAGATAATAAGTTAAAAGGTGCACAACGGGTTAGTACATGCGGGAACTTGTGCTCCATTGATAAACATTCGCGATGGAGCACAATTGAGACAATCACAACGAGATGTGGTACCTTCTCGGAGAACGGTGAAAAATCGTCGGCGGTTAGTTGAGTGATGGGTTTCGATGCTCCGATGAGCTCCGCCAAACTGTCGTCGTCGATCTGCATAGATAGGGGTAGTGTAGAAGGGGTTAAGAAACCGAAAATTTTCCCGAAAAACCCATAAGCGATTTGTTAGACCTTAAACATTTTTTAATGTCCATAACTCAAACCATTTTGATCGTTTTCGCTTGAAACTKATATTTTTAAATTTGTCTTGTCAAGCGCTTCAAAATGAGTATAAACAAAGCTAGCTTTGAAAGAGTTAGCGGGTTACTGTAGTTTTCGCGGTGGGACCCATTTTTCTAAACATAGGCGTGTTTATACTCATTTTGAAGCTCACAATCAGCCAAATCAAACAAAATAAGTTTCACTCAAATTGAGTCAAAACCAAGCGAGTTATGGTCATTTGAATTTTGAAAATCAGCGAACATTCAAATTTGTTCAATATCTCCGTTGGTTTTGGCTCAATTCGAATGAATTTAAATTTTTTGAATTGGCTTGTTCATACGCTTCAAAATGAGTATAAACACGGCTAGTTTCGGAAGAGTTTCAGGGCTACTGTAGTTTTCGTGGTGGGACCCACTTTTCTAAACAAAGGCTTGTTTATACTCATTTTGAAGCTATTGACTTGCTGAATTGAAAAATATAAGTATGATGAGTTTCCGACTGAGTTTATCCAAGTTATGGTACTTTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATTTGTTAGACCTTAAACATT</pcr_primer_p1>
		<pcr_primer_p2>GCTATTAGCACTAACCATCACTT</pcr_primer_p2>
		<pcr_amplicon_size>616</pcr_amplicon_size>
		<canonical_amplicon>CGATTTGTTAGACCTTAAACATTTTTTAATGTCCATAACTCAAACCATTTTGATCGTTTTCGCTTGAAACTGATATTTTTAAATTTGTCTTGTC</canonical_amplicon>
		<polymorphic_amplicon>CGATTTGTTAGACCTTAAACATTTTTTAATGTCCATAACTCAAACCATTTTGATCGTTTTCGCTTGAAACTKATATTTTTAAATTTGTCTTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33078</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>68327</contig_pos>
        <strand></strand>
        <context>agtttcaggg[C/T]tactgtagtt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACGCTTCAAAATGAGTATAAACACGGCTAGTTTCGGAAGAGTTTCAGGG</left_flank>
        <right_flank>TACTGTAGTTTTCGTGGTGGGACCCACTTTTCTAAACAAAGGCTTGTTTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATCTGCATAGATAGGGGTAGTGTAGAAGGGGTTAAGAAACCGAAAATTTTCCCGAAAAACCCATAAGCGATTTGTTAGACCTTAAACATTTTTTAATGTCCATAACTCAAACCATTTTGATCGTTTTCGCTTGAAACTGATATTTTTAAATTTGTCTTGTCAAGCGCTTCAAAATGAGTATAAACAAAGCTAGCTTTGAAAGAGTTAGCGGGTTACTGTAGTTTTCGCGGTGGGACCCATTTTTCTAAACATAGGCGTGTTTATACTCATTTTGAAGCTCACAATCAGCCAAATCAAACAAAATAAGTTTCACTCAAATTGAGTCAAAACCAAGCGAGTTATGGTCATTTGAATTTTGAAAATCAGCGAACATTCAAATTTGTTCAATATCTCCGTTGGTTTTGGCTCAATTCGAATGAATTTAAATTTTTTGAATTGGCTTGTTCATACGCTTCAAAATGAGTATAAACACGGCTAGTTTCGGAAGAGTTTCAGGGCTACTGTAGTTTTCGTGGTGGGACCCACTTTTCTAAACAAAGGCTTGTTTATACTCATTTTGAAGCTATTGACTTGCTGAATTGAAAAATATAAGTATGATGAGTTTCCGACTGAGTTTATCCAAGTTATGGTACTTTTAAACCTTCCTCAATTAGTCCTCTAAAGTGATGGTTAGTGCTAATAGCTAAAAATTGAACTCAAAAATTTTTTTTTAATTCCCATTTTTTTTTGAAAAAGTAGTGAAAAAATAGGAGAAAATCGGGGGAAAAAAAAAGAAGTGAGTGAAAAAGTGTGTGCTTTTTTTTGTGGATTTGGGAATGGAAAGGGACCATCTGAAGAAGAGAGAGAGAGCAGAATTTTTGAAGAGGGACCAGAGAAAATGAGCAATGGGACCGTTATTAGATTATGGGAGAGAAAGGGGACGGGGTTAGGGGAGGAAATAGTGGATTGTTCTTGAAATCTCTAGCTCAGCTTCCAGGAAAAAGAGACGCAGAGAAGCT</canonical>
            <polymorphic>CGATCTGCATAGATAGGGGTAGTGTAGAAGGGGTTAAGAAACCGAAAATTTTCCCGAAAAACCCATAAGCGATTTGTTAGACCTTAAACATTTTTTAATGTCCATAACTCAAACCATTTTGATCGTTTTCGCTTGAAACTGATATTTTTAAATTTGTCTTGTCAAGCGCTTCAAAATGAGTATAAACAAAGCTAGCTTTGAAAGAGTTAGCGGGTTACTGTAGTTTTCGCGGTGGGACCCATTTTTCTAAACATAGGCGTGTTTATACTCATTTTGAAGCTCACAATCAGCCAAATCAAACAAAATAAGTTTCACTCAAATTGAGTCAAAACCAAGCGAGTTATGGTCATTTGAATTTTGAAAATCAGCGAACATTCAAATTTGTTCAATATCTCCGTTGGTTTTGGCTCAATTCGAATGAATTTAAATTTTTTGAATTGGCTTGTTCATACGCTTCAAAATGAGTATAAACACGGCTAGTTTCGGAAGAGTTTCAGGGYTACTGTAGTTTTCGTGGTGGGACCCACTTTTCTAAACAAAGGCTTGTTTATACTCATTTTGAAGCTATTGACTTGCTGAATTGAAAAATATAAGTATGATGAGTTTCCGACTGAGTTTATCCAAGTTATGGTACTTTTAAACCTTCCTCAATTAGTCCTCTAAAGTGATGGTTAGTGCTAATAGCTAAAAATTGAACTCAAAAATTTTTTTTTAATTCCCATTTTTTTTTGAAAAAGTAGTGAAAAAATAGGAGAAAATCGGGGGAAAAAAAAAGAAGTGAGTGAAAAAGTGTGTGCTTTTTTTTGTGGATTTGGGAATGGAAAGGGACCATCTGAAGAAGAGAGAGAGAGCAGAATTTTTGAAGAGGGACCAGAGAAAATGAGCAATGGGACCGTTATTAGATTATGGGAGAGAAAGGGGACGGGGTTAGGGGAGGAAATAGTGGATTGTTCTTGAAATCTCTAGCTCAGCTTCCAGGAAAAAGAGACGCAGAGAAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>282 191 120 117 84 43 35 34 27 23 22 11 5 4 2</canonical_bands>
                <polymorphic_bands>282 191 120 117 84 66 35 34 27 22 11 5 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATTTGTTAGACCTTAAACATT</pcr_primer_p1>
		<pcr_primer_p2>GCTATTAGCACTAACCATCACTT</pcr_primer_p2>
		<pcr_amplicon_size>616</pcr_amplicon_size>
		<canonical_amplicon>CGATTTGTTAGACCTTAAACATTTTTTAATGTCCATAACTCAAACCATTTTGATCGTTTTCGCTTGAAACTGATATTTTTAAATTTGTCTTGTCAAGCGCTTCAAAATGAGTATAAACAAAGCTAGCTTTGAAAGAGTTAGCGGGTTACTGTAGTTTTCGCGGTGGGACCCATTTTTCTAAACATAGGCGTGTTTATACTCATTTTGAAGCTCACAATCAGCCAAATCAAACAAAATAAGTTTCACTCAAATTGAGTCAAAACCAAGCGAGTTATGGTCATTTGAATTTTGAAAATCAGCGAACATTCAAATTTGTTCAATATCTCCGTTGGTTTTGGCTCAATTCGAATGAATTTAAATTTTTTGAATTGGCTTGTTCATACGCTTCAAAATGAGTATAAACACGGCTAGTTTCGGAAGAGTTTCAGGGCTACTGTAGTTTTCGTGGTGGGACCCACTTTTCTAAACAAAGGCTTGTTTATACTCATTTTGAAGCTATTGACTTGCTGAATTGAAAAATATAAGTATGATGAGTTTCCGACTGAGTTTATCCAAGTTATGGTACTTTTAAACCTTCCTCAATTAGTCCTCTAAAGTGATGGTTAGTGCTAATAGC</canonical_amplicon>
		<polymorphic_amplicon>CGATTTGTTAGACCTTAAACATTTTTTAATGTCCATAACTCAAACCATTTTGATCGTTTTCGCTTGAAACTGATATTTTTAAATTTGTCTTGTCAAGCGCTTCAAAATGAGTATAAACAAAGCTAGCTTTGAAAGAGTTAGCGGGTTACTGTAGTTTTCGCGGTGGGACCCATTTTTCTAAACATAGGCGTGTTTATACTCATTTTGAAGCTCACAATCAGCCAAATCAAACAAAATAAGTTTCACTCAAATTGAGTCAAAACCAAGCGAGTTATGGTCATTTGAATTTTGAAAATCAGCGAACATTCAAATTTGTTCAATATCTCCGTTGGTTTTGGCTCAATTCGAATGAATTTAAATTTTTTGAATTGGCTTGTTCATACGCTTCAAAATGAGTATAAACACGGCTAGTTTCGGAAGAGTTTCAGGGYTACTGTAGTTTTCGTGGTGGGACCCACTTTTCTAAACAAAGGCTTGTTTATACTCATTTTGAAGCTATTGACTTGCTGAATTGAAAAATATAAGTATGATGAGTTTCCGACTGAGTTTATCCAAGTTATGGTACTTTTAAACCTTCCTCAATTAGTCCTCTAAAGTGATGGTTAGTGCTAATAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33079</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>69628</contig_pos>
        <strand></strand>
        <context>AACTGCTGCT[C/T]TTTAGTTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCTCACAGTTAAACTGTGCGCGCGTAGCCTAGTGGCTAAAACTGCTGCT</left_flank>
        <right_flank>TTTAGTTTTGAAGTCTCGGGTTCGACACCCACCGGCGGTTTTTTGTCTTC</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTAGCAAAATTTTGCTAGCTCCTCTAGTTTTTGAGGTACATCTATTTTAAGTTGTAGAGCCCCTCTTCCTCACACTAATTCTACACTTACCTTCTTAATATTCTTGTTTTGCGACCTCCTTGTAATCTCCTTTTCCATTTCGCTCATCTGTTTCCGAATCAACGAATCCGTTCGATCGCCGGAATTCTTTCTCTTCTCCTCCGATTTCTCTTCTCCAGATGACGTGGATTCTGGAGACGCTTCTCCCGAAATGACGTCGCCAACGGCAACGTCAGAGGAGGTTGGAACCAGGGTGTCTTCTGAAAAATTTCTAATTTAGCGCTTGATTTTTAGTAATTGTCAGCAGAGCGCGTTTTCATATTTCCTAATTTTACATTACAAAAAAAATTTGGCCGCTCGCTTTCCTTTGAAAAGTTGCGCCGACCACCACCTTCCTAATTACCTTCGCTCTCACAGTTAAACTGTGCGCGCGTAGCCTAGTGGCTAAAACTGCTGCTCTTTAGTTTTGAAGTCTCGGGTTCGACACCCACCGGCGGTTTTTTGTCTTCGTTTTTTTTTCATAGTGGTTTATGAAGGAATTTCGGGTTTTTATCTCATTTTTCTCAAATTTTAATACTTTTTTAGTGCAAATTAGCTCTAAAGTTGGCTTTTCAGGTCCCTCAAAAAGTAGTCTGACTGCTCAGATACAACTCAACATCTTCTCTCGTTCCACAAATACATACACACATCGAACAATTAGTGGAGAATCGACAAACGAGATGTGCGAGAGAGAGAGAGTGAAATGACAAGAGACGCAGAGAAAATCTCTCGTTGAGCCGCCCAAAAGGCGAGAGAGGGAGATGATCTTGTGTTTCAGGATGCCTTCTTTTGGGACACTAGAGGAGTACTAGAGAAGGGGGAACATATATCAAAAACTAGAAAAAATACTCACCAGCGGAATTTGAAACAACAGGCTCCTGAGTTTCTGGCGACGTTGATGCTTCCTTAGATCCCTCTGG</canonical>
            <polymorphic>TGTTAGCAAAATTTTGCTAGCTCCTCTAGTTTTTGAGGTACATCTATTTTAAGTTGTAGAGCCCCTCTTCCTCACACTAATTCTACACTTACCTTCTTAATATTCTTGTTTTGCGACCTCCTTGTAATCTCCTTTTCCATTTCGCTCATCTGTTTCCGAATCAACGAATCCGTTCGATCGCCGGAATTCTTTCTCTTCTCCTCCGATTTCTCTTCTCCAGATGACGTGGATTCTGGAGACGCTTCTCCCGAAATGACGTCGCCAACGGCAACGTCAGAGGAGGTTGGAACCAGGGTGTCTTCTGAAAAATTTCTAATTTAGCGCTTGATTTTTAGTAATTGTCAGCAGAGCGCGTTTTCATATTTCCTAATTTTACATTACAAAAAAAATTTGGCCGCTCGCTTTCCTTTGAAAAGTTGCGCCGACCACCACCTTCCTAATTACCTTCGCTCTCACAGTTAAACTGTGCGCGCGTAGCCTAGTGGCTAAAACTGCTGCTYTTTAGTTTTGAAGTCTCGGGTTCGACACCCACCGGCGGTTTTTTGTCTTCGTTTTTTTTTCATAGTGGTTTATGAAGGAATTTCGGGTTTTTATCTCATTTTTCTCAAATTTTAATACTTTTTTAGTGCAAATTAGCTCTAAAGTTGGCTTTTCAGGTCCCTCAAAAAGTAGTCTGACTGCTCAGATACAACTCAACATCTTCTCTCGTTCCACAAATACATACACACATCGAACAATTAGTGGAGAATCGACAAACGAGATGTGCGAGAGAGAGAGAGTGAAATGACAAGAGACGCAGAGAAAATCTCTCGTTGAGCCGCCCAAAAGGCGAGAGAGGGAGATGATCTTGTGTTTCAGGATGCCTTCTTTTGGGACACTAGAGGAGTACTAGAGAAGGGGGAACATATATCAAAAACTAGAAAAAATACTCACCAGCGGAATTTGAAACAACAGGCTCCTGAGTTTCTGGCGACGTTGATGCTTCCTTAGATCCCTCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTAGTAATTGTCAGCAGAGC</pcr_primer_p1>
		<pcr_primer_p2>CCTTCATAAACCACTATGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTAGTAATTGTCAGCAGAGCGCGTTTTCATATTTCCTAATTTTACATTACAAAAAAAATTTGGCCGCTCGCTTTCCTTTGAAAAGTTGCGCCGACCACCACCTTCCTAATTACCTTCGCTCTCACAGTTAAACTGTGCGCGCGTAGCCTAGTGGCTAAAACTGCTGCTCTTTAGTTTTGAAGTCTCGGGTTCGACACCCACCGGCGGTTTTTTGTCTTCGTTTTTTTTTCATAGTGGTTTATGAAGG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTAGTAATTGTCAGCAGAGCGCGTTTTCATATTTCCTAATTTTACATTACAAAAAAAATTTGGCCGCTCGCTTTCCTTTGAAAAGTTGCGCCGACCACCACCTTCCTAATTACCTTCGCTCTCACAGTTAAACTGTGCGCGCGTAGCCTAGTGGCTAAAACTGCTGCTYTTTAGTTTTGAAGTCTCGGGTTCGACACCCACCGGCGGTTTTTTGTCTTCGTTTTTTTTTCATAGTGGTTTATGAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33080</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>69667</contig_pos>
        <strand>+</strand>
        <context>CCACCGGCGG[C/T]TTTTTGTYTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACTGCTGCTCTTTAGTTTTGAAGTCTCGGGTTCGACACCCACCGGCGG</left_flank>
        <right_flank>TTTTTGTCTTCGTTTTTTTTTCATAGTGGTTTATGAAGGAATTTCGGGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATCTATTTTAAGTTGTAGAGCCCCTCTTCCTCACACTAATTCTACACTTACCTTCTTAATATTCTTGTTTTGCGACCTCCTTGTAATCTCCTTTTCCATTTCGCTCATCTGTTTCCGAATCAACGAATCCGTTCGATCGCCGGAATTCTTTCTCTTCTCCTCCGATTTCTCTTCTCCAGATGACGTGGATTCTGGAGACGCTTCTCCCGAAATGACGTCGCCAACGGCAACGTCAGAGGAGGTTGGAACCAGGGTGTCTTCTGAAAAATTTCTAATTTAGCGCTTGATTTTTAGTAATTGTCAGCAGAGCGCGTTTTCATATTTCCTAATTTTACATTACAAAAAAAATTTGGCCGCTCGCTTTCCTTTGAAAAGTTGCGCCGACCACCACCTTCCTAATTACCTTCGCTCTCACAGTTAAACTGTGCGCGCGTAGCCTAGTGGCTAAAACTGCTGCTCTTTAGTTTTGAAGTCTCGGGTTCGACACCCACCGGCGGTTTTTTGTCTTCGTTTTTTTTTCATAGTGGTTTATGAAGGAATTTCGGGTTTTTATCTCATTTTTCTCAAATTTTAATACTTTTTTAGTGCAAATTAGCTCTAAAGTTGGCTTTTCAGGTCCCTCAAAAAGTAGTCTGACTGCTCAGATACAACTCAACATCTTCTCTCGTTCCACAAATACATACACACATCGAACAATTAGTGGAGAATCGACAAACGAGATGTGCGAGAGAGAGAGAGTGAAATGACAAGAGACGCAGAGAAAATCTCTCGTTGAGCCGCCCAAAAGGCGAGAGAGGGAGATGATCTTGTGTTTCAGGATGCCTTCTTTTGGGACACTAGAGGAGTACTAGAGAAGGGGGAACATATATCAAAAACTAGAAAAAATACTCACCAGCGGAATTTGAAACAACAGGCTCCTGAGTTTCTGGCGACGTTGATGCTTCCTTAGATCCCTCTGGTTTCGTCTGAAAATAACTTAATTTCGATTTAAATTCGTC</canonical>
            <polymorphic>ACATCTATTTTAAGTTGTAGAGCCCCTCTTCCTCACACTAATTCTACACTTACCTTCTTAATATTCTTGTTTTGCGACCTCCTTGTAATCTCCTTTTCCATTTCGCTCATCTGTTTCCGAATCAACGAATCCGTTCGATCGCCGGAATTCTTTCTCTTCTCCTCCGATTTCTCTTCTCCAGATGACGTGGATTCTGGAGACGCTTCTCCCGAAATGACGTCGCCAACGGCAACGTCAGAGGAGGTTGGAACCAGGGTGTCTTCTGAAAAATTTCTAATTTAGCGCTTGATTTTTAGTAATTGTCAGCAGAGCGCGTTTTCATATTTCCTAATTTTACATTACAAAAAAAATTTGGCCGCTCGCTTTCCTTTGAAAAGTTGCGCCGACCACCACCTTCCTAATTACCTTCGCTCTCACAGTTAAACTGTGCGCGCGTAGCCTAGTGGCTAAAACTGCTGCTCTTTAGTTTTGAAGTCTCGGGTTCGACACCCACCGGCGGYTTTTTGTCTTCGTTTTTTTTTCATAGTGGTTTATGAAGGAATTTCGGGTTTTTATCTCATTTTTCTCAAATTTTAATACTTTTTTAGTGCAAATTAGCTCTAAAGTTGGCTTTTCAGGTCCCTCAAAAAGTAGTCTGACTGCTCAGATACAACTCAACATCTTCTCTCGTTCCACAAATACATACACACATCGAACAATTAGTGGAGAATCGACAAACGAGATGTGCGAGAGAGAGAGAGTGAAATGACAAGAGACGCAGAGAAAATCTCTCGTTGAGCCGCCCAAAAGGCGAGAGAGGGAGATGATCTTGTGTTTCAGGATGCCTTCTTTTGGGACACTAGAGGAGTACTAGAGAAGGGGGAACATATATCAAAAACTAGAAAAAATACTCACCAGCGGAATTTGAAACAACAGGCTCCTGAGTTTCTGGCGACGTTGATGCTTCCTTAGATCCCTCTGGTTTCGTCTGAAAATAACTTAATTTCGATTTAAATTCGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTAGCCTAGTGGCTAAAACT</pcr_primer_p1>
		<pcr_primer_p2>GTATGTATTTGTGGAACGAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGTAGCCTAGTGGCTAAAACTGCTGCTCTTTAGTTTTGAAGTCTCGGGTTCGACACCCACCGGCGGTTTTTTGTCTTCGTTTTTTTTTCATAGTGGTTTATGAAGGAATTTCGGGTTTTTATCTCATTTTTCTCAAATTTTAATACTTTTTTAGTGCAAATTAGCTCTAAAGTTGGCTTTTCAGGTCCCTCAAAAAGTAGTCTGACTGCTCAGATACAACTCAACATCTTCTCTCGTTCCACAAATACATAC</canonical_amplicon>
		<polymorphic_amplicon>CGTAGCCTAGTGGCTAAAACTGCTGCTCTTTAGTTTTGAAGTCTCGGGTTCGACACCCACCGGCGGYTTTTTGTCTTCGTTTTTTTTTCATAGTGGTTTATGAAGGAATTTCGGGTTTTTATCTCATTTTTCTCAAATTTTAATACTTTTTTAGTGCAAATTAGCTCTAAAGTTGGCTTTTCAGGTCCCTCAAAAAGTAGTCTGACTGCTCAGATACAACTCAACATCTTCTCTCGTTCCACAAATACATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33081</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>74184</contig_pos>
        <strand>+</strand>
        <context>ggtttagttc[C/T]aaraatgtta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCATCAGCAAAACAAGTCAGATAAAATGAGTATAAACATGGTTTAGTTC</left_flank>
        <right_flank>AAAAATGTTAATTTTTAGCAATGTGGCGCATTTGACTAAATTCATTAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTCCATAAAATTTGTGAAATTTTGAGTATAATATTGCCTATATTCCTTGAAATTTGAATTTCGACCGCAGCCGAGGCCGCGGCCTACTGGTAAATTTGATCGAAAATCAAAATAATCGGAATAAGGTCGATATGGAGCTCAAATTTCCGGAAATTTCATGACAAAGTTGAATATGTTATCAGAAATTGTCCCATTTGTCCCCTAAGTGTCTGTTGTCAATGGAGCGCATATTGTCAAGTTTCTTAAAACTGCCATAACTCGGTTCATTTTACACCTAGAAAATTTTACTTGTTAGTTTTGGAATAATCAAAACAAGCCAGATAAAAAGAGTATAATCAAGACTGGGTTCTGGTATTCTAGTTTTTCTCAATGGGGCGCACTTGGTCATATTTATTAAAACTGTTATAACTCGGTTCATTTTGCAGCTAGAGCAATGAAAACAGTTGTGTCATCAGCAAAACAAGTCAGATAAAATGAGTATAAACATGGTTTAGTTCCAAAAATGTTAATTTTTAGCAATGTGGCGCATTTGACTAAATTCATTAAAATTACAATAACTCGGTTAATTTTGCACTTGGAACAATGAAAGTTTTAGTTTCGGAATCTGCAAAATAAGACAGATAAAATGAGTATAATCATGACTAGGTTTCAAAAATTTTCATTTTTCTCAAAATTTGCAATTGGAGCGCGCTTGAAGTGAAACCGTCCATTTTATCGATAAACTATTGAAAATTTTGTTTTAAAAAAAGAAAGAAATGAAACATACGAAATGGGACTTGTTGTTGCTCGGCGGTAGTTGTCCCACCACCACCCGGAACTCCGCCCCCTTTCAAAGGGGGCGTGGCCGCCGGCGTTGTGGAGGCCGTGGCCGAGACGACTTCTGGAGCCGCTTCAGATGACATCCTGAAAATTCTGCCTGTTCAATGATGAAAATGGGGAGGGGACCAATAGAAACGGGACGGAAAAAGGACATGGATTATTGGGTGCTTCGTGTCTCG</canonical>
            <polymorphic>TTCTCCATAAAATTTGTGAAATTTTGAGTATAATATTGCCTATATTCCTTGAAATTTGAATTTCGACCGCAGCCGAGGCCGCGGCCTACTGGTAAATTTGATCGAAAATCAAAATAATCGGAATAAGGTCGATATGGAGCTCAAATTTCCGGAAATTTCATGACAAAGTTGAATATGTTATCAGAAATTGTCCCATTTGTCCCCTAAGTGTCTGTTGTCAATGGAGCGCATATTGTCAAGTTTCTTAAAACTGCCATAACTCGGTTCATTTTACACCTAGAAAATTTTACTTGTTAGTTTTGGAATAATCAAAACAAGCCAGATAAAAAGAGTATAATCAAGACTGGGTTCTGGTATTCTAGTTTTTCTCAATGGGGCGCACTTGGTCATATTTATTAAAACTGTTATAACTCGGTTCATTTTGCAGCTAGAGCAATGAAAACAGTTGTGTCATCAGCAAAACAAGTCAGATAAAATGAGTATAAACATGGTTTAGTTCYAAAAATGTTAATTTTTAGCAATGTGGCGCATTTGACTAAATTCATTAAAATTACAATAACTCGGTTAATTTTGCACTTGGAACAATGAAAGTTTTAGTTTCGGAATCTGCAAAATAAGACAGATAAAATGAGTATAATCATGACTAGGTTTCAAAAATTTTCATTTTTCTCAAAATTTGCAATTGGAGCGCGCTTGAAGTGAAACCGTCCATTTTATCGATAAACTATTGAAAATTTTGTTTTAAAAAAAGAAAGAAATGAAACATACGAAATGGGACTTGTTGTTGCTCGGCGGTAGTTGTCCCACCACCACCCGGAACTCCGCCCCCTTTCAAAGGGGGCGTGGCCGCCGGCGTTGTGGAGGCCGTGGCCGAGACGACTTCTGGAGCCGCTTCAGATGACATCCTGAAAATTCTGCCTGTTCAATGATGAAAATGGGGAGGGGACCAATAGAAACGGGACGGAAAAAGGACATGGATTATTGGGTGCTTCGTGTCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCATCAGCAAAACAAGTCAG</pcr_primer_p1>
		<pcr_primer_p2>CGTATGTTTCATTTCTTTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>GTCATCAGCAAAACAAGTCAGATAAAATGAGTATAAACATGGTTTAGTTCCAAAAATGTTAATTTTTAGCAATGTGGCGCATTTGACTAAATTCATTAAAATTACAATAACTCGGTTAATTTTGCACTTGGAACAATGAAAGTTTTAGTTTCGGAATCTGCAAAATAAGACAGATAAAATGAGTATAATCATGACTAGGTTTCAAAAATTTTCATTTTTCTCAAAATTTGCAATTGGAGCGCGCTTGAAGTGAAACCGTCCATTTTATCGATAAACTATTGAAAATTTTGTTTTAAAAAAAGAAAGAAATGAAACATACG</canonical_amplicon>
		<polymorphic_amplicon>GTCATCAGCAAAACAAGTCAGATAAAATGAGTATAAACATGGTTTAGTTCYAAAAATGTTAATTTTTAGCAATGTGGCGCATTTGACTAAATTCATTAAAATTACAATAACTCGGTTAATTTTGCACTTGGAACAATGAAAGTTTTAGTTTCGGAATCTGCAAAATAAGACAGATAAAATGAGTATAATCATGACTAGGTTTCAAAAATTTTCATTTTTCTCAAAATTTGCAATTGGAGCGCGCTTGAAGTGAAACCGTCCATTTTATCGATAAACTATTGAAAATTTTGTTTTAAAAAAAGAAAGAAATGAAACATACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33082</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>74187</contig_pos>
        <strand>+</strand>
        <context>ttagttcyaa[A/G]aatgttaatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCAGCAAAACAAGTCAGATAAAATGAGTATAAACATGGTTTAGTTCCAA</left_flank>
        <right_flank>AATGTTAATTTTTAGCAATGTGGCGCATTTGACTAAATTCATTAAAATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCATAAAATTTGTGAAATTTTGAGTATAATATTGCCTATATTCCTTGAAATTTGAATTTCGACCGCAGCCGAGGCCGCGGCCTACTGGTAAATTTGATCGAAAATCAAAATAATCGGAATAAGGTCGATATGGAGCTCAAATTTCCGGAAATTTCATGACAAAGTTGAATATGTTATCAGAAATTGTCCCATTTGTCCCCTAAGTGTCTGTTGTCAATGGAGCGCATATTGTCAAGTTTCTTAAAACTGCCATAACTCGGTTCATTTTACACCTAGAAAATTTTACTTGTTAGTTTTGGAATAATCAAAACAAGCCAGATAAAAAGAGTATAATCAAGACTGGGTTCTGGTATTCTAGTTTTTCTCAATGGGGCGCACTTGGTCATATTTATTAAAACTGTTATAACTCGGTTCATTTTGCAGCTAGAGCAATGAAAACAGTTGTGTCATCAGCAAAACAAGTCAGATAAAATGAGTATAAACATGGTTTAGTTCCAAAAATGTTAATTTTTAGCAATGTGGCGCATTTGACTAAATTCATTAAAATTACAATAACTCGGTTAATTTTGCACTTGGAACAATGAAAGTTTTAGTTTCGGAATCTGCAAAATAAGACAGATAAAATGAGTATAATCATGACTAGGTTTCAAAAATTTTCATTTTTCTCAAAATTTGCAATTGGAGCGCGCTTGAAGTGAAACCGTCCATTTTATCGATAAACTATTGAAAATTTTGTTTTAAAAAAAGAAAGAAATGAAACATACGAAATGGGACTTGTTGTTGCTCGGCGGTAGTTGTCCCACCACCACCCGGAACTCCGCCCCCTTTCAAAGGGGGCGTGGCCGCCGGCGTTGTGGAGGCCGTGGCCGAGACGACTTCTGGAGCCGCTTCAGATGACATCCTGAAAATTCTGCCTGTTCAATGATGAAAATGGGGAGGGGACCAATAGAAACGGGACGGAAAAAGGACATGGATTATTGGGTGCTTCGTGTCTCGTGT</canonical>
            <polymorphic>TCCATAAAATTTGTGAAATTTTGAGTATAATATTGCCTATATTCCTTGAAATTTGAATTTCGACCGCAGCCGAGGCCGCGGCCTACTGGTAAATTTGATCGAAAATCAAAATAATCGGAATAAGGTCGATATGGAGCTCAAATTTCCGGAAATTTCATGACAAAGTTGAATATGTTATCAGAAATTGTCCCATTTGTCCCCTAAGTGTCTGTTGTCAATGGAGCGCATATTGTCAAGTTTCTTAAAACTGCCATAACTCGGTTCATTTTACACCTAGAAAATTTTACTTGTTAGTTTTGGAATAATCAAAACAAGCCAGATAAAAAGAGTATAATCAAGACTGGGTTCTGGTATTCTAGTTTTTCTCAATGGGGCGCACTTGGTCATATTTATTAAAACTGTTATAACTCGGTTCATTTTGCAGCTAGAGCAATGAAAACAGTTGTGTCATCAGCAAAACAAGTCAGATAAAATGAGTATAAACATGGTTTAGTTCCAARAATGTTAATTTTTAGCAATGTGGCGCATTTGACTAAATTCATTAAAATTACAATAACTCGGTTAATTTTGCACTTGGAACAATGAAAGTTTTAGTTTCGGAATCTGCAAAATAAGACAGATAAAATGAGTATAATCATGACTAGGTTTCAAAAATTTTCATTTTTCTCAAAATTTGCAATTGGAGCGCGCTTGAAGTGAAACCGTCCATTTTATCGATAAACTATTGAAAATTTTGTTTTAAAAAAAGAAAGAAATGAAACATACGAAATGGGACTTGTTGTTGCTCGGCGGTAGTTGTCCCACCACCACCCGGAACTCCGCCCCCTTTCAAAGGGGGCGTGGCCGCCGGCGTTGTGGAGGCCGTGGCCGAGACGACTTCTGGAGCCGCTTCAGATGACATCCTGAAAATTCTGCCTGTTCAATGATGAAAATGGGGAGGGGACCAATAGAAACGGGACGGAAAAAGGACATGGATTATTGGGTGCTTCGTGTCTCGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCAGCAAAACAAGTCAGAT</pcr_primer_p1>
		<pcr_primer_p2>CGTATGTTTCATTTCTTTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>318</pcr_amplicon_size>
		<canonical_amplicon>CATCAGCAAAACAAGTCAGATAAAATGAGTATAAACATGGTTTAGTTCCAAAAATGTTAATTTTTAGCAATGTGGCGCATTTGACTAAATTCATTAAAATTACAATAACTCGGTTAATTTTGCACTTGGAACAATGAAAGTTTTAGTTTCGGAATCTGCAAAATAAGACAGATAAAATGAGTATAATCATGACTAGGTTTCAAAAATTTTCATTTTTCTCAAAATTTGCAATTGGAGCGCGCTTGAAGTGAAACCGTCCATTTTATCGATAAACTATTGAAAATTTTGTTTTAAAAAAAGAAAGAAATGAAACATACG</canonical_amplicon>
		<polymorphic_amplicon>CATCAGCAAAACAAGTCAGATAAAATGAGTATAAACATGGTTTAGTTCCAARAATGTTAATTTTTAGCAATGTGGCGCATTTGACTAAATTCATTAAAATTACAATAACTCGGTTAATTTTGCACTTGGAACAATGAAAGTTTTAGTTTCGGAATCTGCAAAATAAGACAGATAAAATGAGTATAATCATGACTAGGTTTCAAAAATTTTCATTTTTCTCAAAATTTGCAATTGGAGCGCGCTTGAAGTGAAACCGTCCATTTTATCGATAAACTATTGAAAATTTTGTTTTAAAAAAAGAAAGAAATGAAACATACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33083</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>74208</contig_pos>
        <strand>+</strand>
        <context>tttagcaatg[G/T]ggcgcatttg</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATGAGTATAAACATGGTTTAGTTCCAAAAATGTTAATTTTTAGCAATG</left_flank>
        <right_flank>GGCGCATTTGACTAAATTCATTAAAATTACAATAACTCGGTTAATTTTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGTATAATATTGCCTATATTCCTTGAAATTTGAATTTCGACCGCAGCCGAGGCCGCGGCCTACTGGTAAATTTGATCGAAAATCAAAATAATCGGAATAAGGTCGATATGGAGCTCAAATTTCCGGAAATTTCATGACAAAGTTGAATATGTTATCAGAAATTGTCCCATTTGTCCCCTAAGTGTCTGTTGTCAATGGAGCGCATATTGTCAAGTTTCTTAAAACTGCCATAACTCGGTTCATTTTACACCTAGAAAATTTTACTTGTTAGTTTTGGAATAATCAAAACAAGCCAGATAAAAAGAGTATAATCAAGACTGGGTTCTGGTATTCTAGTTTTTCTCAATGGGGCGCACTTGGTCATATTTATTAAAACTGTTATAACTCGGTTCATTTTGCAGCTAGAGCAATGAAAACAGTTGTGTCATCAGCAAAACAAGTCAGATAAAATGAGTATAAACATGGTTTAGTTCCAAAAATGTTAATTTTTAGCAATGTGGCGCATTTGACTAAATTCATTAAAATTACAATAACTCGGTTAATTTTGCACTTGGAACAATGAAAGTTTTAGTTTCGGAATCTGCAAAATAAGACAGATAAAATGAGTATAATCATGACTAGGTTTCAAAAATTTTCATTTTTCTCAAAATTTGCAATTGGAGCGCGCTTGAAGTGAAACCGTCCATTTTATCGATAAACTATTGAAAATTTTGTTTTAAAAAAAGAAAGAAATGAAACATACGAAATGGGACTTGTTGTTGCTCGGCGGTAGTTGTCCCACCACCACCCGGAACTCCGCCCCCTTTCAAAGGGGGCGTGGCCGCCGGCGTTGTGGAGGCCGTGGCCGAGACGACTTCTGGAGCCGCTTCAGATGACATCCTGAAAATTCTGCCTGTTCAATGATGAAAATGGGGAGGGGACCAATAGAAACGGGACGGAAAAAGGACATGGATTATTGGGTGCTTCGTGTCTCGTGTCGAATTAATTAGGAAGAGAGA</canonical>
            <polymorphic>TGAGTATAATATTGCCTATATTCCTTGAAATTTGAATTTCGACCGCAGCCGAGGCCGCGGCCTACTGGTAAATTTGATCGAAAATCAAAATAATCGGAATAAGGTCGATATGGAGCTCAAATTTCCGGAAATTTCATGACAAAGTTGAATATGTTATCAGAAATTGTCCCATTTGTCCCCTAAGTGTCTGTTGTCAATGGAGCGCATATTGTCAAGTTTCTTAAAACTGCCATAACTCGGTTCATTTTACACCTAGAAAATTTTACTTGTTAGTTTTGGAATAATCAAAACAAGCCAGATAAAAAGAGTATAATCAAGACTGGGTTCTGGTATTCTAGTTTTTCTCAATGGGGCGCACTTGGTCATATTTATTAAAACTGTTATAACTCGGTTCATTTTGCAGCTAGAGCAATGAAAACAGTTGTGTCATCAGCAAAACAAGTCAGATAAAATGAGTATAAACATGGTTTAGTTCCAAAAATGTTAATTTTTAGCAATGKGGCGCATTTGACTAAATTCATTAAAATTACAATAACTCGGTTAATTTTGCACTTGGAACAATGAAAGTTTTAGTTTCGGAATCTGCAAAATAAGACAGATAAAATGAGTATAATCATGACTAGGTTTCAAAAATTTTCATTTTTCTCAAAATTTGCAATTGGAGCGCGCTTGAAGTGAAACCGTCCATTTTATCGATAAACTATTGAAAATTTTGTTTTAAAAAAAGAAAGAAATGAAACATACGAAATGGGACTTGTTGTTGCTCGGCGGTAGTTGTCCCACCACCACCCGGAACTCCGCCCCCTTTCAAAGGGGGCGTGGCCGCCGGCGTTGTGGAGGCCGTGGCCGAGACGACTTCTGGAGCCGCTTCAGATGACATCCTGAAAATTCTGCCTGTTCAATGATGAAAATGGGGAGGGGACCAATAGAAACGGGACGGAAAAAGGACATGGATTATTGGGTGCTTCGTGTCTCGTGTCGAATTAATTAGGAAGAGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>186 126 119 106 105 75 69 65 50 33 22 15 9 7 7 3 3</canonical_bands>
                <polymorphic_bands>186 126 125 119 106 105 69 65 33 22 15 9 7 7 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATCAGCAAAACAAGTCAGAT</pcr_primer_p1>
		<pcr_primer_p2>CGTATGTTTCATTTCTTTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>318</pcr_amplicon_size>
		<canonical_amplicon>CATCAGCAAAACAAGTCAGATAAAATGAGTATAAACATGGTTTAGTTCCAAAAATGTTAATTTTTAGCAATGTGGCGCATTTGACTAAATTCATTAAAATTACAATAACTCGGTTAATTTTGCACTTGGAACAATGAAAGTTTTAGTTTCGGAATCTGCAAAATAAGACAGATAAAATGAGTATAATCATGACTAGGTTTCAAAAATTTTCATTTTTCTCAAAATTTGCAATTGGAGCGCGCTTGAAGTGAAACCGTCCATTTTATCGATAAACTATTGAAAATTTTGTTTTAAAAAAAGAAAGAAATGAAACATACG</canonical_amplicon>
		<polymorphic_amplicon>CATCAGCAAAACAAGTCAGATAAAATGAGTATAAACATGGTTTAGTTCCAAAAATGTTAATTTTTAGCAATGKGGCGCATTTGACTAAATTCATTAAAATTACAATAACTCGGTTAATTTTGCACTTGGAACAATGAAAGTTTTAGTTTCGGAATCTGCAAAATAAGACAGATAAAATGAGTATAATCATGACTAGGTTTCAAAAATTTTCATTTTTCTCAAAATTTGCAATTGGAGCGCGCTTGAAGTGAAACCGTCCATTTTATCGATAAACTATTGAAAATTTTGTTTTAAAAAAAGAAAGAAATGAAACATACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33084</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>75796</contig_pos>
        <strand>+</strand>
        <context>AAATTCTGTG[A/T]TTTTYAAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTG</left_flank>
        <right_flank>TTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTTATATTTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAAATTTTCACTTTTCGCATTGGAGCGCATTTGCACCAAAATTTTCTGAAAATTCAAATTGATTGGAATATAGTCGATATGGGGCTCAACATGTTGGAAATTTTATGAAAAAATAGAATGTAGCTCTCAAAAATCTTTAGACTGTCCCATGTGTCCCCTAAGTGTCTTTTGTCAATAGGGCGCGCTTGAGAAGTTTACCAAGAGCCTAGTCTTCTCAAAACTCTACAAATGAAACAAATTCTTATGCTTCTACTACTAGAATCTTCTTGTCGCACGTCTTCTTCTGAATGCCAATTCATTTGTCATGTTTCTTCTTGTCAAACGGCAGGGGAAAAAGAAGTAAAGACACTAATCCCAGGCAGAAAAAACAATATCATTCGAAGAAATTTTTTCACTTTTTGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTTTTTCAAGTTCTAGATCCTTTCACATAAATTTCTCCAGTAAAAATAAAATGAGAGGAGTAATAAGCGTAAATGAAAATAAGAAAATAAATGATGGAAGAAGCGACGAAAAAATAATAATAAGCTCTCTTTTCTCCAGGGAGAAAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGCTCCTAGGCG</canonical>
            <polymorphic>TCAAAAATTTTCACTTTTCGCATTGGAGCGCATTTGCACCAAAATTTTCTGAAAATTCAAATTGATTGGAATATAGTCGATATGGGGCTCAACATGTTGGAAATTTTATGAAAAAATAGAATGTAGCTCTCAAAAATCTTTAGACTGTCCCATGTGTCCCCTAAGTGTCTTTTGTCAATAGGGCGCGCTTGAGAAGTTTACCAAGAGCCTAGTCTTCTCAAAACTCTACAAATGAAACAAATTCTTATGCTTCTACTACTAGAATCTTCTTGTCGCACGTCTTCTTCTGAATGCCAATTCATTTGTCATGTTTCTTCTTGTCAAACGGCAGGGGAAAAAGAAGTAAAGACACTAATCCCAGGCAGAAAAAACAATATCATTCGAAGAAATTTTTTCACTTTTTGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGWTTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTTTTTCAAGTTCTAGATCCTTTCACATAAATTTCTCCAGTAAAAATAAAATGAGAGGAGTAATAAGCGTAAATGAAAATAAGAAAATAAATGATGGAAGAAGCGACGAAAAAATAATAATAAGCTCTCTTTTCTCCAGGGAGAAAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGCTCCTAGGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGTTAGACAAGAGAGAAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAACTGAAAAATCGTTAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>380</pcr_amplicon_size>
		<canonical_amplicon>TGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGWTTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33085</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>75801</contig_pos>
        <strand>+</strand>
        <context>CTGTGWTTTT[C/T]AAAAGTGGSC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTT</left_flank>
        <right_flank>AAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTCACTTTTCGCATTGGAGCGCATTTGCACCAAAATTTTCTGAAAATTCAAATTGATTGGAATATAGTCGATATGGGGCTCAACATGTTGGAAATTTTATGAAAAAATAGAATGTAGCTCTCAAAAATCTTTAGACTGTCCCATGTGTCCCCTAAGTGTCTTTTGTCAATAGGGCGCGCTTGAGAAGTTTACCAAGAGCCTAGTCTTCTCAAAACTCTACAAATGAAACAAATTCTTATGCTTCTACTACTAGAATCTTCTTGTCGCACGTCTTCTTCTGAATGCCAATTCATTTGTCATGTTTCTTCTTGTCAAACGGCAGGGGAAAAAGAAGTAAAGACACTAATCCCAGGCAGAAAAAACAATATCATTCGAAGAAATTTTTTCACTTTTTGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTTTTTCAAGTTCTAGATCCTTTCACATAAATTTCTCCAGTAAAAATAAAATGAGAGGAGTAATAAGCGTAAATGAAAATAAGAAAATAAATGATGGAAGAAGCGACGAAAAAATAATAATAAGCTCTCTTTTCTCCAGGGAGAAAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGCTCCTAGGCGAGAGA</canonical>
            <polymorphic>AATTTTCACTTTTCGCATTGGAGCGCATTTGCACCAAAATTTTCTGAAAATTCAAATTGATTGGAATATAGTCGATATGGGGCTCAACATGTTGGAAATTTTATGAAAAAATAGAATGTAGCTCTCAAAAATCTTTAGACTGTCCCATGTGTCCCCTAAGTGTCTTTTGTCAATAGGGCGCGCTTGAGAAGTTTACCAAGAGCCTAGTCTTCTCAAAACTCTACAAATGAAACAAATTCTTATGCTTCTACTACTAGAATCTTCTTGTCGCACGTCTTCTTCTGAATGCCAATTCATTTGTCATGTTTCTTCTTGTCAAACGGCAGGGGAAAAAGAAGTAAAGACACTAATCCCAGGCAGAAAAAACAATATCATTCGAAGAAATTTTTTCACTTTTTGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTYAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTTTTTCAAGTTCTAGATCCTTTCACATAAATTTCTCCAGTAAAAATAAAATGAGAGGAGTAATAAGCGTAAATGAAAATAAGAAAATAAATGATGGAAGAAGCGACGAAAAAATAATAATAAGCTCTCTTTTCTCCAGGGAGAAAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGCTCCTAGGCGAGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGTTAGACAAGAGAGAAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAACTGAAAAATCGTTAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>380</pcr_amplicon_size>
		<canonical_amplicon>TGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTYAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33086</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>75810</contig_pos>
        <strand>+</strand>
        <context>TYAAAAGTGG[C/G]CSMGRRCAGW</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGG</left_flank>
        <right_flank>CTAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCGCATTGGAGCGCATTTGCACCAAAATTTTCTGAAAATTCAAATTGATTGGAATATAGTCGATATGGGGCTCAACATGTTGGAAATTTTATGAAAAAATAGAATGTAGCTCTCAAAAATCTTTAGACTGTCCCATGTGTCCCCTAAGTGTCTTTTGTCAATAGGGCGCGCTTGAGAAGTTTACCAAGAGCCTAGTCTTCTCAAAACTCTACAAATGAAACAAATTCTTATGCTTCTACTACTAGAATCTTCTTGTCGCACGTCTTCTTCTGAATGCCAATTCATTTGTCATGTTTCTTCTTGTCAAACGGCAGGGGAAAAAGAAGTAAAGACACTAATCCCAGGCAGAAAAAACAATATCATTCGAAGAAATTTTTTCACTTTTTGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTTTTTCAAGTTCTAGATCCTTTCACATAAATTTCTCCAGTAAAAATAAAATGAGAGGAGTAATAAGCGTAAATGAAAATAAGAAAATAAATGATGGAAGAAGCGACGAAAAAATAATAATAAGCTCTCTTTTCTCCAGGGAGAAAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGCTCCTAGGCGAGAGACTGAGCTTA</canonical>
            <polymorphic>TTTTCGCATTGGAGCGCATTTGCACCAAAATTTTCTGAAAATTCAAATTGATTGGAATATAGTCGATATGGGGCTCAACATGTTGGAAATTTTATGAAAAAATAGAATGTAGCTCTCAAAAATCTTTAGACTGTCCCATGTGTCCCCTAAGTGTCTTTTGTCAATAGGGCGCGCTTGAGAAGTTTACCAAGAGCCTAGTCTTCTCAAAACTCTACAAATGAAACAAATTCTTATGCTTCTACTACTAGAATCTTCTTGTCGCACGTCTTCTTCTGAATGCCAATTCATTTGTCATGTTTCTTCTTGTCAAACGGCAGGGGAAAAAGAAGTAAAGACACTAATCCCAGGCAGAAAAAACAATATCATTCGAAGAAATTTTTTCACTTTTTGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGSCTAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTTTTTCAAGTTCTAGATCCTTTCACATAAATTTCTCCAGTAAAAATAAAATGAGAGGAGTAATAAGCGTAAATGAAAATAAGAAAATAAATGATGGAAGAAGCGACGAAAAAATAATAATAAGCTCTCTTTTCTCCAGGGAGAAAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGCTCCTAGGCGAGAGACTGAGCTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>499 383 99 8 6 5</canonical_bands>
                <polymorphic_bands>598 383 8 6 5</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>306 223 87 81 73 72 49 39 27 20 6 5 4 4 4</canonical_bands>
                <polymorphic_bands>378 223 87 81 73 49 39 27 20 6 5 4 4 4</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGTTAGACAAGAGAGAAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAACTGAAAAATCGTTAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>380</pcr_amplicon_size>
		<canonical_amplicon>TGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGSCTAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33087</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>75812</contig_pos>
        <strand>+</strand>
        <context>AAAAGTGGSC[C/G]MGRRCAGWGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCC</left_flank>
        <right_flank>AGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGCATTGGAGCGCATTTGCACCAAAATTTTCTGAAAATTCAAATTGATTGGAATATAGTCGATATGGGGCTCAACATGTTGGAAATTTTATGAAAAAATAGAATGTAGCTCTCAAAAATCTTTAGACTGTCCCATGTGTCCCCTAAGTGTCTTTTGTCAATAGGGCGCGCTTGAGAAGTTTACCAAGAGCCTAGTCTTCTCAAAACTCTACAAATGAAACAAATTCTTATGCTTCTACTACTAGAATCTTCTTGTCGCACGTCTTCTTCTGAATGCCAATTCATTTGTCATGTTTCTTCTTGTCAAACGGCAGGGGAAAAAGAAGTAAAGACACTAATCCCAGGCAGAAAAAACAATATCATTCGAAGAAATTTTTTCACTTTTTGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTTTTTCAAGTTCTAGATCCTTTCACATAAATTTCTCCAGTAAAAATAAAATGAGAGGAGTAATAAGCGTAAATGAAAATAAGAAAATAAATGATGGAAGAAGCGACGAAAAAATAATAATAAGCTCTCTTTTCTCCAGGGAGAAAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGCTCCTAGGCGAGAGACTGAGCTTATT</canonical>
            <polymorphic>TTCGCATTGGAGCGCATTTGCACCAAAATTTTCTGAAAATTCAAATTGATTGGAATATAGTCGATATGGGGCTCAACATGTTGGAAATTTTATGAAAAAATAGAATGTAGCTCTCAAAAATCTTTAGACTGTCCCATGTGTCCCCTAAGTGTCTTTTGTCAATAGGGCGCGCTTGAGAAGTTTACCAAGAGCCTAGTCTTCTCAAAACTCTACAAATGAAACAAATTCTTATGCTTCTACTACTAGAATCTTCTTGTCGCACGTCTTCTTCTGAATGCCAATTCATTTGTCATGTTTCTTCTTGTCAAACGGCAGGGGAAAAAGAAGTAAAGACACTAATCCCAGGCAGAAAAAACAATATCATTCGAAGAAATTTTTTCACTTTTTGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCSAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTTTTTCAAGTTCTAGATCCTTTCACATAAATTTCTCCAGTAAAAATAAAATGAGAGGAGTAATAAGCGTAAATGAAAATAAGAAAATAAATGATGGAAGAAGCGACGAAAAAATAATAATAAGCTCTCTTTTCTCCAGGGAGAAAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGCTCCTAGGCGAGAGACTGAGCTTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>277 256 202 193 50 22</canonical_bands>
                <polymorphic_bands>533 202 193 50 22</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGTTAGACAAGAGAGAAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAACTGAAAAATCGTTAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>380</pcr_amplicon_size>
		<canonical_amplicon>TGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCSAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33088</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>75813</contig_pos>
        <strand>+</strand>
        <context>AAAGTGGSCS[A/C]GRRCAGWGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCT</left_flank>
        <right_flank>GTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGCATTGGAGCGCATTTGCACCAAAATTTTCTGAAAATTCAAATTGATTGGAATATAGTCGATATGGGGCTCAACATGTTGGAAATTTTATGAAAAAATAGAATGTAGCTCTCAAAAATCTTTAGACTGTCCCATGTGTCCCCTAAGTGTCTTTTGTCAATAGGGCGCGCTTGAGAAGTTTACCAAGAGCCTAGTCTTCTCAAAACTCTACAAATGAAACAAATTCTTATGCTTCTACTACTAGAATCTTCTTGTCGCACGTCTTCTTCTGAATGCCAATTCATTTGTCATGTTTCTTCTTGTCAAACGGCAGGGGAAAAAGAAGTAAAGACACTAATCCCAGGCAGAAAAAACAATATCATTCGAAGAAATTTTTTCACTTTTTGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTTTTTCAAGTTCTAGATCCTTTCACATAAATTTCTCCAGTAAAAATAAAATGAGAGGAGTAATAAGCGTAAATGAAAATAAGAAAATAAATGATGGAAGAAGCGACGAAAAAATAATAATAAGCTCTCTTTTCTCCAGGGAGAAAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGCTCCTAGGCGAGAGACTGAGCTTATTA</canonical>
            <polymorphic>TCGCATTGGAGCGCATTTGCACCAAAATTTTCTGAAAATTCAAATTGATTGGAATATAGTCGATATGGGGCTCAACATGTTGGAAATTTTATGAAAAAATAGAATGTAGCTCTCAAAAATCTTTAGACTGTCCCATGTGTCCCCTAAGTGTCTTTTGTCAATAGGGCGCGCTTGAGAAGTTTACCAAGAGCCTAGTCTTCTCAAAACTCTACAAATGAAACAAATTCTTATGCTTCTACTACTAGAATCTTCTTGTCGCACGTCTTCTTCTGAATGCCAATTCATTTGTCATGTTTCTTCTTGTCAAACGGCAGGGGAAAAAGAAGTAAAGACACTAATCCCAGGCAGAAAAAACAATATCATTCGAAGAAATTTTTTCACTTTTTGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTMGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTTTTTCAAGTTCTAGATCCTTTCACATAAATTTCTCCAGTAAAAATAAAATGAGAGGAGTAATAAGCGTAAATGAAAATAAGAAAATAAATGATGGAAGAAGCGACGAAAAAATAATAATAAGCTCTCTTTTCTCCAGGGAGAAAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGCTCCTAGGCGAGAGACTGAGCTTATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>277 256 202 192 50 23</canonical_bands>
                <polymorphic_bands>533 202 192 50 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGTTAGACAAGAGAGAAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAACTGAAAAATCGTTAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>380</pcr_amplicon_size>
		<canonical_amplicon>TGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTMGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33089</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>75815</contig_pos>
        <strand>+</strand>
        <context>AGTGGSCSMG[A/G]RCAGWGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAG</left_flank>
        <right_flank>TCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATTGGAGCGCATTTGCACCAAAATTTTCTGAAAATTCAAATTGATTGGAATATAGTCGATATGGGGCTCAACATGTTGGAAATTTTATGAAAAAATAGAATGTAGCTCTCAAAAATCTTTAGACTGTCCCATGTGTCCCCTAAGTGTCTTTTGTCAATAGGGCGCGCTTGAGAAGTTTACCAAGAGCCTAGTCTTCTCAAAACTCTACAAATGAAACAAATTCTTATGCTTCTACTACTAGAATCTTCTTGTCGCACGTCTTCTTCTGAATGCCAATTCATTTGTCATGTTTCTTCTTGTCAAACGGCAGGGGAAAAAGAAGTAAAGACACTAATCCCAGGCAGAAAAAACAATATCATTCGAAGAAATTTTTTCACTTTTTGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTTTTTCAAGTTCTAGATCCTTTCACATAAATTTCTCCAGTAAAAATAAAATGAGAGGAGTAATAAGCGTAAATGAAAATAAGAAAATAAATGATGGAAGAAGCGACGAAAAAATAATAATAAGCTCTCTTTTCTCCAGGGAGAAAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGCTCCTAGGCGAGAGACTGAGCTTATTATT</canonical>
            <polymorphic>GCATTGGAGCGCATTTGCACCAAAATTTTCTGAAAATTCAAATTGATTGGAATATAGTCGATATGGGGCTCAACATGTTGGAAATTTTATGAAAAAATAGAATGTAGCTCTCAAAAATCTTTAGACTGTCCCATGTGTCCCCTAAGTGTCTTTTGTCAATAGGGCGCGCTTGAGAAGTTTACCAAGAGCCTAGTCTTCTCAAAACTCTACAAATGAAACAAATTCTTATGCTTCTACTACTAGAATCTTCTTGTCGCACGTCTTCTTCTGAATGCCAATTCATTTGTCATGTTTCTTCTTGTCAAACGGCAGGGGAAAAAGAAGTAAAGACACTAATCCCAGGCAGAAAAAACAATATCATTCGAAGAAATTTTTTCACTTTTTGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGRTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTTTTTCAAGTTCTAGATCCTTTCACATAAATTTCTCCAGTAAAAATAAAATGAGAGGAGTAATAAGCGTAAATGAAAATAAGAAAATAAATGATGGAAGAAGCGACGAAAAAATAATAATAAGCTCTCTTTTCTCCAGGGAGAAAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGCTCCTAGGCGAGAGACTGAGCTTATTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGTTAGACAAGAGAGAAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAACTGAAAAATCGTTAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>380</pcr_amplicon_size>
		<canonical_amplicon>TGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGRTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33090</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>75816</contig_pos>
        <strand>+</strand>
        <context>GTGGSCSMGR[A/G]CAGWGAAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGT</left_flank>
        <right_flank>CAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTGGAGCGCATTTGCACCAAAATTTTCTGAAAATTCAAATTGATTGGAATATAGTCGATATGGGGCTCAACATGTTGGAAATTTTATGAAAAAATAGAATGTAGCTCTCAAAAATCTTTAGACTGTCCCATGTGTCCCCTAAGTGTCTTTTGTCAATAGGGCGCGCTTGAGAAGTTTACCAAGAGCCTAGTCTTCTCAAAACTCTACAAATGAAACAAATTCTTATGCTTCTACTACTAGAATCTTCTTGTCGCACGTCTTCTTCTGAATGCCAATTCATTTGTCATGTTTCTTCTTGTCAAACGGCAGGGGAAAAAGAAGTAAAGACACTAATCCCAGGCAGAAAAAACAATATCATTCGAAGAAATTTTTTCACTTTTTGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTTTTTCAAGTTCTAGATCCTTTCACATAAATTTCTCCAGTAAAAATAAAATGAGAGGAGTAATAAGCGTAAATGAAAATAAGAAAATAAATGATGGAAGAAGCGACGAAAAAATAATAATAAGCTCTCTTTTCTCCAGGGAGAAAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGCTCCTAGGCGAGAGACTGAGCTTATTATTA</canonical>
            <polymorphic>CATTGGAGCGCATTTGCACCAAAATTTTCTGAAAATTCAAATTGATTGGAATATAGTCGATATGGGGCTCAACATGTTGGAAATTTTATGAAAAAATAGAATGTAGCTCTCAAAAATCTTTAGACTGTCCCATGTGTCCCCTAAGTGTCTTTTGTCAATAGGGCGCGCTTGAGAAGTTTACCAAGAGCCTAGTCTTCTCAAAACTCTACAAATGAAACAAATTCTTATGCTTCTACTACTAGAATCTTCTTGTCGCACGTCTTCTTCTGAATGCCAATTCATTTGTCATGTTTCTTCTTGTCAAACGGCAGGGGAAAAAGAAGTAAAGACACTAATCCCAGGCAGAAAAAACAATATCATTCGAAGAAATTTTTTCACTTTTTGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTRCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTTTTTCAAGTTCTAGATCCTTTCACATAAATTTCTCCAGTAAAAATAAAATGAGAGGAGTAATAAGCGTAAATGAAAATAAGAAAATAAATGATGGAAGAAGCGACGAAAAAATAATAATAAGCTCTCTTTTCTCCAGGGAGAAAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGCTCCTAGGCGAGAGACTGAGCTTATTATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>336 238 184 162 50 30</canonical_bands>
                <polymorphic_bands>336 238 212 184 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGTTAGACAAGAGAGAAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAACTGAAAAATCGTTAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>380</pcr_amplicon_size>
		<canonical_amplicon>TGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTRCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33091</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>75820</contig_pos>
        <strand>+</strand>
        <context>SCSMGRRCAG[A/T]GAAAACYAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAG</left_flank>
        <right_flank>GAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGCGCATTTGCACCAAAATTTTCTGAAAATTCAAATTGATTGGAATATAGTCGATATGGGGCTCAACATGTTGGAAATTTTATGAAAAAATAGAATGTAGCTCTCAAAAATCTTTAGACTGTCCCATGTGTCCCCTAAGTGTCTTTTGTCAATAGGGCGCGCTTGAGAAGTTTACCAAGAGCCTAGTCTTCTCAAAACTCTACAAATGAAACAAATTCTTATGCTTCTACTACTAGAATCTTCTTGTCGCACGTCTTCTTCTGAATGCCAATTCATTTGTCATGTTTCTTCTTGTCAAACGGCAGGGGAAAAAGAAGTAAAGACACTAATCCCAGGCAGAAAAAACAATATCATTCGAAGAAATTTTTTCACTTTTTGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTTTTTCAAGTTCTAGATCCTTTCACATAAATTTCTCCAGTAAAAATAAAATGAGAGGAGTAATAAGCGTAAATGAAAATAAGAAAATAAATGATGGAAGAAGCGACGAAAAAATAATAATAAGCTCTCTTTTCTCCAGGGAGAAAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGCTCCTAGGCGAGAGACTGAGCTTATTATTATTAA</canonical>
            <polymorphic>GGAGCGCATTTGCACCAAAATTTTCTGAAAATTCAAATTGATTGGAATATAGTCGATATGGGGCTCAACATGTTGGAAATTTTATGAAAAAATAGAATGTAGCTCTCAAAAATCTTTAGACTGTCCCATGTGTCCCCTAAGTGTCTTTTGTCAATAGGGCGCGCTTGAGAAGTTTACCAAGAGCCTAGTCTTCTCAAAACTCTACAAATGAAACAAATTCTTATGCTTCTACTACTAGAATCTTCTTGTCGCACGTCTTCTTCTGAATGCCAATTCATTTGTCATGTTTCTTCTTGTCAAACGGCAGGGGAAAAAGAAGTAAAGACACTAATCCCAGGCAGAAAAAACAATATCATTCGAAGAAATTTTTTCACTTTTTGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGWGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTTTTTCAAGTTCTAGATCCTTTCACATAAATTTCTCCAGTAAAAATAAAATGAGAGGAGTAATAAGCGTAAATGAAAATAAGAAAATAAATGATGGAAGAAGCGACGAAAAAATAATAATAAGCTCTCTTTTCTCCAGGGAGAAAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGCTCCTAGGCGAGAGACTGAGCTTATTATTATTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>340 238 184 162 50 26</canonical_bands>
                <polymorphic_bands>340 238 212 184 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGTTAGACAAGAGAGAAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAACTGAAAAATCGTTAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>380</pcr_amplicon_size>
		<canonical_amplicon>TGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGWGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33092</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>75827</contig_pos>
        <strand>+</strand>
        <context>CAGWGAAAAC[C/T]AATATCGRTW</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAAC</left_flank>
        <right_flank>AATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGCACCAAAATTTTCTGAAAATTCAAATTGATTGGAATATAGTCGATATGGGGCTCAACATGTTGGAAATTTTATGAAAAAATAGAATGTAGCTCTCAAAAATCTTTAGACTGTCCCATGTGTCCCCTAAGTGTCTTTTGTCAATAGGGCGCGCTTGAGAAGTTTACCAAGAGCCTAGTCTTCTCAAAACTCTACAAATGAAACAAATTCTTATGCTTCTACTACTAGAATCTTCTTGTCGCACGTCTTCTTCTGAATGCCAATTCATTTGTCATGTTTCTTCTTGTCAAACGGCAGGGGAAAAAGAAGTAAAGACACTAATCCCAGGCAGAAAAAACAATATCATTCGAAGAAATTTTTTCACTTTTTGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTTTTTCAAGTTCTAGATCCTTTCACATAAATTTCTCCAGTAAAAATAAAATGAGAGGAGTAATAAGCGTAAATGAAAATAAGAAAATAAATGATGGAAGAAGCGACGAAAAAATAATAATAAGCTCTCTTTTCTCCAGGGAGAAAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGCTCCTAGGCGAGAGACTGAGCTTATTATTATTAAGACTAGG</canonical>
            <polymorphic>ATTTGCACCAAAATTTTCTGAAAATTCAAATTGATTGGAATATAGTCGATATGGGGCTCAACATGTTGGAAATTTTATGAAAAAATAGAATGTAGCTCTCAAAAATCTTTAGACTGTCCCATGTGTCCCCTAAGTGTCTTTTGTCAATAGGGCGCGCTTGAGAAGTTTACCAAGAGCCTAGTCTTCTCAAAACTCTACAAATGAAACAAATTCTTATGCTTCTACTACTAGAATCTTCTTGTCGCACGTCTTCTTCTGAATGCCAATTCATTTGTCATGTTTCTTCTTGTCAAACGGCAGGGGAAAAAGAAGTAAAGACACTAATCCCAGGCAGAAAAAACAATATCATTCGAAGAAATTTTTTCACTTTTTGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAACYAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTTTTTCAAGTTCTAGATCCTTTCACATAAATTTCTCCAGTAAAAATAAAATGAGAGGAGTAATAAGCGTAAATGAAAATAAGAAAATAAATGATGGAAGAAGCGACGAAAAAATAATAATAAGCTCTCTTTTCTCCAGGGAGAAAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGCTCCTAGGCGAGAGACTGAGCTTATTATTATTAAGACTAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGTTAGACAAGAGAGAAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAACTGAAAAATCGTTAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>380</pcr_amplicon_size>
		<canonical_amplicon>TGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAACYAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33093</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>75835</contig_pos>
        <strand>+</strand>
        <context>ACYAATATCG[A/G]TWTATTTttt</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCG</left_flank>
        <right_flank>TATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAATTTTCTGAAAATTCAAATTGATTGGAATATAGTCGATATGGGGCTCAACATGTTGGAAATTTTATGAAAAAATAGAATGTAGCTCTCAAAAATCTTTAGACTGTCCCATGTGTCCCCTAAGTGTCTTTTGTCAATAGGGCGCGCTTGAGAAGTTTACCAAGAGCCTAGTCTTCTCAAAACTCTACAAATGAAACAAATTCTTATGCTTCTACTACTAGAATCTTCTTGTCGCACGTCTTCTTCTGAATGCCAATTCATTTGTCATGTTTCTTCTTGTCAAACGGCAGGGGAAAAAGAAGTAAAGACACTAATCCCAGGCAGAAAAAACAATATCATTCGAAGAAATTTTTTCACTTTTTGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTTTTTCAAGTTCTAGATCCTTTCACATAAATTTCTCCAGTAAAAATAAAATGAGAGGAGTAATAAGCGTAAATGAAAATAAGAAAATAAATGATGGAAGAAGCGACGAAAAAATAATAATAAGCTCTCTTTTCTCCAGGGAGAAAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGCTCCTAGGCGAGAGACTGAGCTTATTATTATTAAGACTAGGAAATGTGT</canonical>
            <polymorphic>CAAAATTTTCTGAAAATTCAAATTGATTGGAATATAGTCGATATGGGGCTCAACATGTTGGAAATTTTATGAAAAAATAGAATGTAGCTCTCAAAAATCTTTAGACTGTCCCATGTGTCCCCTAAGTGTCTTTTGTCAATAGGGCGCGCTTGAGAAGTTTACCAAGAGCCTAGTCTTCTCAAAACTCTACAAATGAAACAAATTCTTATGCTTCTACTACTAGAATCTTCTTGTCGCACGTCTTCTTCTGAATGCCAATTCATTTGTCATGTTTCTTCTTGTCAAACGGCAGGGGAAAAAGAAGTAAAGACACTAATCCCAGGCAGAAAAAACAATATCATTCGAAGAAATTTTTTCACTTTTTGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGRTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTTTTTCAAGTTCTAGATCCTTTCACATAAATTTCTCCAGTAAAAATAAAATGAGAGGAGTAATAAGCGTAAATGAAAATAAGAAAATAAATGATGGAAGAAGCGACGAAAAAATAATAATAAGCTCTCTTTTCTCCAGGGAGAAAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGCTCCTAGGCGAGAGACTGAGCTTATTATTATTAAGACTAGGAAATGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGTTAGACAAGAGAGAAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAACTGAAAAATCGTTAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>380</pcr_amplicon_size>
		<canonical_amplicon>TGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGRTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33094</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>75837</contig_pos>
        <strand>+</strand>
        <context>YAATATCGRT[A/T]TATTTtttct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTT</left_flank>
        <right_flank>TATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTTCTGAAAATTCAAATTGATTGGAATATAGTCGATATGGGGCTCAACATGTTGGAAATTTTATGAAAAAATAGAATGTAGCTCTCAAAAATCTTTAGACTGTCCCATGTGTCCCCTAAGTGTCTTTTGTCAATAGGGCGCGCTTGAGAAGTTTACCAAGAGCCTAGTCTTCTCAAAACTCTACAAATGAAACAAATTCTTATGCTTCTACTACTAGAATCTTCTTGTCGCACGTCTTCTTCTGAATGCCAATTCATTTGTCATGTTTCTTCTTGTCAAACGGCAGGGGAAAAAGAAGTAAAGACACTAATCCCAGGCAGAAAAAACAATATCATTCGAAGAAATTTTTTCACTTTTTGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTTTTTCAAGTTCTAGATCCTTTCACATAAATTTCTCCAGTAAAAATAAAATGAGAGGAGTAATAAGCGTAAATGAAAATAAGAAAATAAATGATGGAAGAAGCGACGAAAAAATAATAATAAGCTCTCTTTTCTCCAGGGAGAAAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGCTCCTAGGCGAGAGACTGAGCTTATTATTATTAAGACTAGGAAATGTGTGA</canonical>
            <polymorphic>AAATTTTCTGAAAATTCAAATTGATTGGAATATAGTCGATATGGGGCTCAACATGTTGGAAATTTTATGAAAAAATAGAATGTAGCTCTCAAAAATCTTTAGACTGTCCCATGTGTCCCCTAAGTGTCTTTTGTCAATAGGGCGCGCTTGAGAAGTTTACCAAGAGCCTAGTCTTCTCAAAACTCTACAAATGAAACAAATTCTTATGCTTCTACTACTAGAATCTTCTTGTCGCACGTCTTCTTCTGAATGCCAATTCATTTGTCATGTTTCTTCTTGTCAAACGGCAGGGGAAAAAGAAGTAAAGACACTAATCCCAGGCAGAAAAAACAATATCATTCGAAGAAATTTTTTCACTTTTTGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTTWTATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTTTTTCAAGTTCTAGATCCTTTCACATAAATTTCTCCAGTAAAAATAAAATGAGAGGAGTAATAAGCGTAAATGAAAATAAGAAAATAAATGATGGAAGAAGCGACGAAAAAATAATAATAAGCTCTCTTTTCTCCAGGGAGAAAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGCTCCTAGGCGAGAGACTGAGCTTATTATTATTAAGACTAGGAAATGTGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGTTAGACAAGAGAGAAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAACTGAAAAATCGTTAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>380</pcr_amplicon_size>
		<canonical_amplicon>TGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTTATATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TGTGTTAGACAAGAGAGAAGAAAAATATTAATCTTTTTGGAGAAAAAAAAAATCAAAAATCAAAAAATCCGAATTTTTAGAATTCTAAAATTCTGTGATTTTGAAAAGTGGCCTAGTTCAGAGAAAACAAATATCGTTWTATTTTTTCTTATGAAATTTGTGAAATTTTGAGTATAATATTGGCTATAATCCTTAAAATTTGATTTTGGGCCAGCCGGCCGGGCCGCGGCCTAATTATGGTCGAAAATCAAAACTGCCAGAATGTAGTCGATATGGGGCTCAGAATGTTGGAAATTTCAAGACAAAATAGACTATAACATTTAAAAATAATGAGACTGTCCCATTTGTCCCTTAAGTGCCACTAACGATTTTTCAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33095</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>104964</contig_pos>
        <strand></strand>
        <context>ATATTTCAAT[T/C]TAGTCGTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCTCAGCGTTGGTTCAATCGAATCCGGGTCGACTGGAGAAATATTTCAAT</left_flank>
        <right_flank>TAGTCGTGAAACATGCGGATGACGCCATCTACAAGTACACACGAACACCN</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTACCCGTTTTTGAAAAATTTTTGGATCATTTTGGGCCTATTTTTGACTGATTTTGAGCACTTTTCGTCCATTTTTGAGTTCCTTTTCACAATTTTCGATGGATTTTTGATCACTTTTTGACCATTCTCGGATAGTTTTTGACCCTTTATAATTATTTTAGACCATATTTGCAAACGGGCCGACCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAACAAGATTTTTTGACGGATTTGAGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGGCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATNNNNNNNNNNCAGATGGCTGGGCGAAGCGTCGATGACCCTGTTCGCATGCGTAATGAACATCACCTCAGCGTTGGTTCAATCGAATCCGGGTCGACTGGAGAAATATTTCAATTTAGTCGTGAAACATGCGGATGACGCCATCTACAAGTACACACGAACACCNCAGGAGCCGGGTGTCGTTCGATGTATCAATATGATCAAAATGACGACGTTGGAGATGATGGCTTGCTGTAATGTGATGGCGTGTCGACCAGAACAGACACTGTCGAATGTTCGGGATATGCTGGAGATGTGTAATCGATCCAGTGGACCGCTGTTGTATCGATTCTATGCACCACATATTCAGTATATTTTGGTGGGTTTTTAAAAAATGTATTTTTTACCGTTTTCCAAGAAATTTGGACCATTTTTCATGAATTTTGGACAATTTTGATGGATTTTGAGTCATTTTTCATAAATTTTGGCAGTTTTTGATGACTTTTGGACTATATATCAATTTTTGACCATTTTTCACAAATTTTAAGCCATTCTCATGAATTTTGAGCCATTTTCCGTAAATTTTGGACCATTTTTCATGAATTTTGGATCATTTTCCTATGAATTATGGACATTT</canonical>
            <polymorphic>TTTTACCCGTTTTTGAAAAATTTTTGGATCATTTTGGGCCTATTTTTGACTGATTTTGAGCACTTTTCGTCCATTTTTGAGTTCCTTTTCACAATTTTCGATGGATTTTTGATCACTTTTTGACCATTCTCGGATAGTTTTTGACCCTTTATAATTATTTTAGACCATATTTGCAAACGGGCCGACCCGGGCAGATGGCGGGCCGGCAGATAACTCGGCTTCAGAACAAGATTTTTTGACGGATTTGAGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTTGGCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATNNNNNNNNNNCAGATGGCTGGGCGAAGCGTCGATGACCCTGTTCGCATGCGTAATGAACATCACCTCAGCGTTGGTTCAATCGAATCCGGGTCGACTGGAGAAATATTTCAATYTAGTCGTGAAACATGCGGATGACGCCATCTACAAGTACACACGAACACCNCAGGAGCCGGGTGTCGTTCGATGTATCAATATGATCAAAATGACGACGTTGGAGATGATGGCTTGCTGTAATGTGATGGCGTGTCGACCAGAACAGACACTGTCGAATGTTCGGGATATGCTGGAGATGTGTAATCGATCCAGTGGACCGCTGTTGTATCGATTCTATGCACCACATATTCAGTATATTTTGGTGGGTTTTTAAAAAATGTATTTTTTACCGTTTTCCAAGAAATTTGGACCATTTTTCATGAATTTTGGACAATTTTGATGGATTTTGAGTCATTTTTCATAAATTTTGGCAGTTTTTGATGACTTTTGGACTATATATCAATTTTTGACCATTTTTCACAAATTTTAAGCCATTCTCATGAATTTTGAGCCATTTTCCGTAAATTTTGGACCATTTTTCATGAATTTTGGATCATTTTCCTATGAATTATGGACATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>344 286 74 60 38 31 22 21 21 21 20 20 18 14 10</canonical_bands>
                <polymorphic_bands>630 74 60 38 31 22 21 21 21 20 20 18 14 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGCGTAATGAACATCACCT</pcr_primer_p1>
		<pcr_primer_p2>CGATTACACATCTCCAGCATA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>ATGCGTAATGAACATCACCTCAGCGTTGGTTCAATCGAATCCGGGTCGACTGGAGAAATATTTCAATTTAGTCGTGAAACATGCGGATGACGCCATCTACAAGTACACACGAACACCNCAGGAGCCGGGTGTCGTTCGATGTATCAATATGATCAAAATGACGACGTTGGAGATGATGGCTTGCTGTAATGTGATGGCGTGTCGACCAGAACAGACACTGTCGAATGTTCGGGATATGCTGGAGATGTGTAATCG</canonical_amplicon>
		<polymorphic_amplicon>ATGCGTAATGAACATCACCTCAGCGTTGGTTCAATCGAATCCGGGTCGACTGGAGAAATATTTCAATYTAGTCGTGAAACATGCGGATGACGCCATCTACAAGTACACACGAACACCNCAGGAGCCGGGTGTCGTTCGATGTATCAATATGATCAAAATGACGACGTTGGAGATGATGGCTTGCTGTAATGTGATGGCGTGTCGACCAGAACAGACACTGTCGAATGTTCGGGATATGCTGGAGATGTGTAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33096</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>105241</contig_pos>
        <strand></strand>
        <context>TTAccgtttt[C/A]cawgaaattt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TATTCAGTATATTTTGGTGGGTTTTTAAAAAATGTATTTTTTACCGTTTT</left_flank>
        <right_flank>CAAGAAATTTGGACCATTTTTCATGAATTTTGGACAATTTTGATGGATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCAAGCTTGGCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATNNNNNNNNNNCAGATGGCTGGGCGAAGCGTCGATGACCCTGTTCGCATGCGTAATGAACATCACCTCAGCGTTGGTTCAATCGAATCCGGGTCGACTGGAGAAATATTTCAATTTAGTCGTGAAACATGCGGATGACGCCATCTACAAGTACACACGAACACCNCAGGAGCCGGGTGTCGTTCGATGTATCAATATGATCAAAATGACGACGTTGGAGATGATGGCTTGCTGTAATGTGATGGCGTGTCGACCAGAACAGACACTGTCGAATGTTCGGGATATGCTGGAGATGTGTAATCGATCCAGTGGACCGCTGTTGTATCGATTCTATGCACCACATATTCAGTATATTTTGGTGGGTTTTTAAAAAATGTATTTTTTACCGTTTTCCAAGAAATTTGGACCATTTTTCATGAATTTTGGACAATTTTGATGGATTTTGAGTCATTTTTCATAAATTTTGGCAGTTTTTGATGACTTTTGGACTATATATCAATTTTTGACCATTTTTCACAAATTTTAAGCCATTCTCATGAATTTTGAGCCATTTTCCGTAAATTTTGGACCATTTTTCATGAATTTTGGATCATTTTCCTATGAATTATGGACATTTTTCAATAATTTTTTGACAATTTTCCACTCATGAGCTACATAACGAAGCTATTTATGGATACTATATCTTGTCTATGAACGAAGTTACAAATCAAAAACCAAACGAGCTAAGCGATCACTGCTTATTGGCTTGCTGACTTTGTTCATTGACAAGGTACAGTAATCCAAATAGTATCATTTTGGAGCTCTTGAGTTTTTCTACCATACTCAATTCAGTTGGTTCCAAAATATTGGAGCTGAAGAAGACTATGGTGGCCGTGGACTAGGAAACTTCCGTC</canonical>
            <polymorphic>TGCAAGCTTGGCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATNNNNNNNNNNCAGATGGCTGGGCGAAGCGTCGATGACCCTGTTCGCATGCGTAATGAACATCACCTCAGCGTTGGTTCAATCGAATCCGGGTCGACTGGAGAAATATTTCAATTTAGTCGTGAAACATGCGGATGACGCCATCTACAAGTACACACGAACACCNCAGGAGCCGGGTGTCGTTCGATGTATCAATATGATCAAAATGACGACGTTGGAGATGATGGCTTGCTGTAATGTGATGGCGTGTCGACCAGAACAGACACTGTCGAATGTTCGGGATATGCTGGAGATGTGTAATCGATCCAGTGGACCGCTGTTGTATCGATTCTATGCACCACATATTCAGTATATTTTGGTGGGTTTTTAAAAAATGTATTTTTTACCGTTTTMCAAGAAATTTGGACCATTTTTCATGAATTTTGGACAATTTTGATGGATTTTGAGTCATTTTTCATAAATTTTGGCAGTTTTTGATGACTTTTGGACTATATATCAATTTTTGACCATTTTTCACAAATTTTAAGCCATTCTCATGAATTTTGAGCCATTTTCCGTAAATTTTGGACCATTTTTCATGAATTTTGGATCATTTTCCTATGAATTATGGACATTTTTCAATAATTTTTTGACAATTTTCCACTCATGAGCTACATAACGAAGCTATTTATGGATACTATATCTTGTCTATGAACGAAGTTACAAATCAAAAACCAAACGAGCTAAGCGATCACTGCTTATTGGCTTGCTGACTTTGTTCATTGACAAGGTACAGTAATCCAAATAGTATCATTTTGGAGCTCTTGAGTTTTTCTACCATACTCAATTCAGTTGGTTCCAAAATATTGGAGCTGAAGAAGACTATGGTGGCCGTGGACTAGGAAACTTCCGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTATGCACCACATATTCAGTA</pcr_primer_p1>
		<pcr_primer_p2>ATGAGTGGAAAATTGTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>319</pcr_amplicon_size>
		<canonical_amplicon>TTCTATGCACCACATATTCAGTATATTTTGGTGGGTTTTTAAAAAATGTATTTTTTACCGTTTTCCAAGAAATTTGGACCATTTTTCATGAATTTTGGACAATTTTGATGGATTTTGAGTCATTTTTCATAAATTTTGGCAGTTTTTGATGACTTTTGGACTATATATCAATTTTTGACCATTTTTCACAAATTTTAAGCCATTCTCATGAATTTTGAGCCATTTTCCGTAAATTTTGGACCATTTTTCATGAATTTTGGATCATTTTCCTATGAATTATGGACATTTTTCAATAATTTTTTGACAATTTTCCACTCAT</canonical_amplicon>
		<polymorphic_amplicon>TTCTATGCACCACATATTCAGTATATTTTGGTGGGTTTTTAAAAAATGTATTTTTTACCGTTTTMCAAGAAATTTGGACCATTTTTCATGAATTTTGGACAATTTTGATGGATTTTGAGTCATTTTTCATAAATTTTGGCAGTTTTTGATGACTTTTGGACTATATATCAATTTTTGACCATTTTTCACAAATTTTAAGCCATTCTCATGAATTTTGAGCCATTTTCCGTAAATTTTGGACCATTTTTCATGAATTTTGGATCATTTTCCTATGAATTATGGACATTTTTCAATAATTTTTTGACAATTTTCCACTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33097</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>105244</contig_pos>
        <strand></strand>
        <context>ccgttttmca[A/T]gaaatttgga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAGTATATTTTGGTGGGTTTTTAAAAAATGTATTTTTTACCGTTTTCCA</left_flank>
        <right_flank>GAAATTTGGACCATTTTTCATGAATTTTGGACAATTTTGATGGATTTTGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCTTGGCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATNNNNNNNNNNCAGATGGCTGGGCGAAGCGTCGATGACCCTGTTCGCATGCGTAATGAACATCACCTCAGCGTTGGTTCAATCGAATCCGGGTCGACTGGAGAAATATTTCAATTTAGTCGTGAAACATGCGGATGACGCCATCTACAAGTACACACGAACACCNCAGGAGCCGGGTGTCGTTCGATGTATCAATATGATCAAAATGACGACGTTGGAGATGATGGCTTGCTGTAATGTGATGGCGTGTCGACCAGAACAGACACTGTCGAATGTTCGGGATATGCTGGAGATGTGTAATCGATCCAGTGGACCGCTGTTGTATCGATTCTATGCACCACATATTCAGTATATTTTGGTGGGTTTTTAAAAAATGTATTTTTTACCGTTTTCCAAGAAATTTGGACCATTTTTCATGAATTTTGGACAATTTTGATGGATTTTGAGTCATTTTTCATAAATTTTGGCAGTTTTTGATGACTTTTGGACTATATATCAATTTTTGACCATTTTTCACAAATTTTAAGCCATTCTCATGAATTTTGAGCCATTTTCCGTAAATTTTGGACCATTTTTCATGAATTTTGGATCATTTTCCTATGAATTATGGACATTTTTCAATAATTTTTTGACAATTTTCCACTCATGAGCTACATAACGAAGCTATTTATGGATACTATATCTTGTCTATGAACGAAGTTACAAATCAAAAACCAAACGAGCTAAGCGATCACTGCTTATTGGCTTGCTGACTTTGTTCATTGACAAGGTACAGTAATCCAAATAGTATCATTTTGGAGCTCTTGAGTTTTTCTACCATACTCAATTCAGTTGGTTCCAAAATATTGGAGCTGAAGAAGACTATGGTGGCCGTGGACTAGGAAACTTCCGTCCGT</canonical>
            <polymorphic>AAGCTTGGCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATNNNNNNNNNNCAGATGGCTGGGCGAAGCGTCGATGACCCTGTTCGCATGCGTAATGAACATCACCTCAGCGTTGGTTCAATCGAATCCGGGTCGACTGGAGAAATATTTCAATTTAGTCGTGAAACATGCGGATGACGCCATCTACAAGTACACACGAACACCNCAGGAGCCGGGTGTCGTTCGATGTATCAATATGATCAAAATGACGACGTTGGAGATGATGGCTTGCTGTAATGTGATGGCGTGTCGACCAGAACAGACACTGTCGAATGTTCGGGATATGCTGGAGATGTGTAATCGATCCAGTGGACCGCTGTTGTATCGATTCTATGCACCACATATTCAGTATATTTTGGTGGGTTTTTAAAAAATGTATTTTTTACCGTTTTCCAWGAAATTTGGACCATTTTTCATGAATTTTGGACAATTTTGATGGATTTTGAGTCATTTTTCATAAATTTTGGCAGTTTTTGATGACTTTTGGACTATATATCAATTTTTGACCATTTTTCACAAATTTTAAGCCATTCTCATGAATTTTGAGCCATTTTCCGTAAATTTTGGACCATTTTTCATGAATTTTGGATCATTTTCCTATGAATTATGGACATTTTTCAATAATTTTTTGACAATTTTCCACTCATGAGCTACATAACGAAGCTATTTATGGATACTATATCTTGTCTATGAACGAAGTTACAAATCAAAAACCAAACGAGCTAAGCGATCACTGCTTATTGGCTTGCTGACTTTGTTCATTGACAAGGTACAGTAATCCAAATAGTATCATTTTGGAGCTCTTGAGTTTTTCTACCATACTCAATTCAGTTGGTTCCAAAATATTGGAGCTGAAGAAGACTATGGTGGCCGTGGACTAGGAAACTTCCGTCCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTATGCACCACATATTCAGTA</pcr_primer_p1>
		<pcr_primer_p2>ATGAGTGGAAAATTGTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>319</pcr_amplicon_size>
		<canonical_amplicon>TTCTATGCACCACATATTCAGTATATTTTGGTGGGTTTTTAAAAAATGTATTTTTTACCGTTTTCCAAGAAATTTGGACCATTTTTCATGAATTTTGGACAATTTTGATGGATTTTGAGTCATTTTTCATAAATTTTGGCAGTTTTTGATGACTTTTGGACTATATATCAATTTTTGACCATTTTTCACAAATTTTAAGCCATTCTCATGAATTTTGAGCCATTTTCCGTAAATTTTGGACCATTTTTCATGAATTTTGGATCATTTTCCTATGAATTATGGACATTTTTCAATAATTTTTTGACAATTTTCCACTCAT</canonical_amplicon>
		<polymorphic_amplicon>TTCTATGCACCACATATTCAGTATATTTTGGTGGGTTTTTAAAAAATGTATTTTTTACCGTTTTCCAWGAAATTTGGACCATTTTTCATGAATTTTGGACAATTTTGATGGATTTTGAGTCATTTTTCATAAATTTTGGCAGTTTTTGATGACTTTTGGACTATATATCAATTTTTGACCATTTTTCACAAATTTTAAGCCATTCTCATGAATTTTGAGCCATTTTCCGTAAATTTTGGACCATTTTTCATGAATTTTGGATCATTTTCCTATGAATTATGGACATTTTTCAATAATTTTTTGACAATTTTCCACTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33098</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>105304</contig_pos>
        <strand></strand>
        <context>agtcattttt[C/T]ataaattttg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCATTTTTCATGAATTTTGGACAATTTTGATGGATTTTGAGTCATTTTT</left_flank>
        <right_flank>ATAAATTTTGGCAGTTTTTGATGACTTTTGGACTATATATCAATTTTTGA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATNNNNNNNNNNCAGATGGCTGGGCGAAGCGTCGATGACCCTGTTCGCATGCGTAATGAACATCACCTCAGCGTTGGTTCAATCGAATCCGGGTCGACTGGAGAAATATTTCAATTTAGTCGTGAAACATGCGGATGACGCCATCTACAAGTACACACGAACACCNCAGGAGCCGGGTGTCGTTCGATGTATCAATATGATCAAAATGACGACGTTGGAGATGATGGCTTGCTGTAATGTGATGGCGTGTCGACCAGAACAGACACTGTCGAATGTTCGGGATATGCTGGAGATGTGTAATCGATCCAGTGGACCGCTGTTGTATCGATTCTATGCACCACATATTCAGTATATTTTGGTGGGTTTTTAAAAAATGTATTTTTTACCGTTTTCCAAGAAATTTGGACCATTTTTCATGAATTTTGGACAATTTTGATGGATTTTGAGTCATTTTTCATAAATTTTGGCAGTTTTTGATGACTTTTGGACTATATATCAATTTTTGACCATTTTTCACAAATTTTAAGCCATTCTCATGAATTTTGAGCCATTTTCCGTAAATTTTGGACCATTTTTCATGAATTTTGGATCATTTTCCTATGAATTATGGACATTTTTCAATAATTTTTTGACAATTTTCCACTCATGAGCTACATAACGAAGCTATTTATGGATACTATATCTTGTCTATGAACGAAGTTACAAATCAAAAACCAAACGAGCTAAGCGATCACTGCTTATTGGCTTGCTGACTTTGTTCATTGACAAGGTACAGTAATCCAAATAGTATCATTTTGGAGCTCTTGAGTTTTTCTACCATACTCAATTCAGTTGGTTCCAAAATATTGGAGCTGAAGAAGACTATGGTGGCCGTGGACTAGGAAACTTCCGTCCGTTAAAAAAGGGTATATTTCAATGGCACTTTTTCAAGCTAACTTTTACCTAATTTTTTTTTC</canonical>
            <polymorphic>ACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATNNNNNNNNNNCAGATGGCTGGGCGAAGCGTCGATGACCCTGTTCGCATGCGTAATGAACATCACCTCAGCGTTGGTTCAATCGAATCCGGGTCGACTGGAGAAATATTTCAATTTAGTCGTGAAACATGCGGATGACGCCATCTACAAGTACACACGAACACCNCAGGAGCCGGGTGTCGTTCGATGTATCAATATGATCAAAATGACGACGTTGGAGATGATGGCTTGCTGTAATGTGATGGCGTGTCGACCAGAACAGACACTGTCGAATGTTCGGGATATGCTGGAGATGTGTAATCGATCCAGTGGACCGCTGTTGTATCGATTCTATGCACCACATATTCAGTATATTTTGGTGGGTTTTTAAAAAATGTATTTTTTACCGTTTTCCAAGAAATTTGGACCATTTTTCATGAATTTTGGACAATTTTGATGGATTTTGAGTCATTTTTYATAAATTTTGGCAGTTTTTGATGACTTTTGGACTATATATCAATTTTTGACCATTTTTCACAAATTTTAAGCCATTCTCATGAATTTTGAGCCATTTTCCGTAAATTTTGGACCATTTTTCATGAATTTTGGATCATTTTCCTATGAATTATGGACATTTTTCAATAATTTTTTGACAATTTTCCACTCATGAGCTACATAACGAAGCTATTTATGGATACTATATCTTGTCTATGAACGAAGTTACAAATCAAAAACCAAACGAGCTAAGCGATCACTGCTTATTGGCTTGCTGACTTTGTTCATTGACAAGGTACAGTAATCCAAATAGTATCATTTTGGAGCTCTTGAGTTTTTCTACCATACTCAATTCAGTTGGTTCCAAAATATTGGAGCTGAAGAAGACTATGGTGGCCGTGGACTAGGAAACTTCCGTCCGTTAAAAAAGGGTATATTTCAATGGCACTTTTTCAAGCTAACTTTTACCTAATTTTTTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTATGCACCACATATTCAGTA</pcr_primer_p1>
		<pcr_primer_p2>ATGAGTGGAAAATTGTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>319</pcr_amplicon_size>
		<canonical_amplicon>TTCTATGCACCACATATTCAGTATATTTTGGTGGGTTTTTAAAAAATGTATTTTTTACCGTTTTCCAAGAAATTTGGACCATTTTTCATGAATTTTGGACAATTTTGATGGATTTTGAGTCATTTTTCATAAATTTTGGCAGTTTTTGATGACTTTTGGACTATATATCAATTTTTGACCATTTTTCACAAATTTTAAGCCATTCTCATGAATTTTGAGCCATTTTCCGTAAATTTTGGACCATTTTTCATGAATTTTGGATCATTTTCCTATGAATTATGGACATTTTTCAATAATTTTTTGACAATTTTCCACTCAT</canonical_amplicon>
		<polymorphic_amplicon>TTCTATGCACCACATATTCAGTATATTTTGGTGGGTTTTTAAAAAATGTATTTTTTACCGTTTTCCAAGAAATTTGGACCATTTTTCATGAATTTTGGACAATTTTGATGGATTTTGAGTCATTTTTYATAAATTTTGGCAGTTTTTGATGACTTTTGGACTATATATCAATTTTTGACCATTTTTCACAAATTTTAAGCCATTCTCATGAATTTTGAGCCATTTTCCGTAAATTTTGGACCATTTTTCATGAATTTTGGATCATTTTCCTATGAATTATGGACATTTTTCAATAATTTTTTGACAATTTTCCACTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33099</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>111641</contig_pos>
        <strand>+</strand>
        <context>cTAAATTTTT[G/T]AAAATTTTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAATTTAGAGTTCTCGAAAATTCTAAATTTTTGAAATTTCTAAATTTTT</left_flank>
        <right_flank>AAAATTTTAATTTTCAAACCTCAAAGTGGTTTCTTCTCCATTCTGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTCTGAATTTCTGAATTTCTGGATTTCCGCATTTCTGAATGGCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCCGAATTTCTGAATTTATGAATTTCTGAATTTCTGAATTTCTTAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTACTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAAATTTCTCGAAATTTAGAGTTCTCGAAAATTCTAAATTTTTGAAATTTCTAAATTTTTGAAAATTTTAATTTTCAAACCTCAAAGTGGTTTCTTCTCCATTCTGAAAAATCCAATTTTCTGCGAATTTCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTACTAAACGCTACACAATTCTCCATTCTGATACATTTTCTCCGTTCTGATACATTTCAAATTCTGATACATTTTCATCATATATTTCCCTGGAAAAACCAATTTTCTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATTTTTTTTAAGTTTTGTTTTTGTGTTTTCATTAGTTTTCATTAGTTTTCAGGGAGTTTT</canonical>
            <polymorphic>AATTTCTGAATTTCTGAATTTCTGGATTTCCGCATTTCTGAATGGCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCCGAATTTCTGAATTTATGAATTTCTGAATTTCTGAATTTCTTAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTACTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAAATTTCTCGAAATTTAGAGTTCTCGAAAATTCTAAATTTTTGAAATTTCTAAATTTTTKAAAATTTTAATTTTCAAACCTCAAAGTGGTTTCTTCTCCATTCTGAAAAATCCAATTTTCTGCGAATTTCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTACTAAACGCTACACAATTCTCCATTCTGATACATTTTCTCCGTTCTGATACATTTCAAATTCTGATACATTTTCATCATATATTTCCCTGGAAAAACCAATTTTCTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATTTTTTTTAAGTTTTGTTTTTGTGTTTTCATTAGTTTTCATTAGTTTTCAGGGAGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGATTTAGTTGGACTTTTTGA</pcr_primer_p1>
		<pcr_primer_p2>GTACCCAGACAGAGGTATAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>746</pcr_amplicon_size>
		<canonical_amplicon>TGAAAATTTTAATTTTCAAACCTCAAAGTGGTTTCTTCTCCATTCTGAAAAATCCAATTTTCTGCGAATTTCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTAC</canonical_amplicon>
		<polymorphic_amplicon>TKAAAATTTTAATTTTCAAACCTCAAAGTGGTTTCTTCTCCATTCTGAAAAATCCAATTTTCTGCGAATTTCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33100</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>111653</contig_pos>
        <strand>+</strand>
        <context>AAATTTTAAT[C/T]TTCAAACCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCGAAAATTCTAAATTTTTGAAATTTCTAAATTTTTGAAAATTTTAAT</left_flank>
        <right_flank>TTCAAACCTCAAAGTGGTTTCTTCTCCATTCTGAAAAATCCAATTTTCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGAATTTCTGGATTTCCGCATTTCTGAATGGCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCCGAATTTCTGAATTTATGAATTTCTGAATTTCTGAATTTCTTAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTACTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAAATTTCTCGAAATTTAGAGTTCTCGAAAATTCTAAATTTTTGAAATTTCTAAATTTTTGAAAATTTTAATTTTCAAACCTCAAAGTGGTTTCTTCTCCATTCTGAAAAATCCAATTTTCTGCGAATTTCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTACTAAACGCTACACAATTCTCCATTCTGATACATTTTCTCCGTTCTGATACATTTCAAATTCTGATACATTTTCATCATATATTTCCCTGGAAAAACCAATTTTCTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATTTTTTTTAAGTTTTGTTTTTGTGTTTTCATTAGTTTTCATTAGTTTTCAGGGAGTTTTTCGATGGTTTAA</canonical>
            <polymorphic>TCTGAATTTCTGGATTTCCGCATTTCTGAATGGCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCCGAATTTCTGAATTTATGAATTTCTGAATTTCTGAATTTCTTAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTACTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAAATTTCTCGAAATTTAGAGTTCTCGAAAATTCTAAATTTTTGAAATTTCTAAATTTTTGAAAATTTTAATYTTCAAACCTCAAAGTGGTTTCTTCTCCATTCTGAAAAATCCAATTTTCTGCGAATTTCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTACTAAACGCTACACAATTCTCCATTCTGATACATTTTCTCCGTTCTGATACATTTCAAATTCTGATACATTTTCATCATATATTTCCCTGGAAAAACCAATTTTCTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATTTTTTTTAAGTTTTGTTTTTGTGTTTTCATTAGTTTTCATTAGTTTTCAGGGAGTTTTTCGATGGTTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>271 45 43 41 37 32 32 24 17 16 11 10 10 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 6 4</canonical_bands>
                <polymorphic_bands>271 51 43 41 37 32 32 24 17 16 11 10 10 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGATTTAGTTGGACTTTTTGA</pcr_primer_p1>
		<pcr_primer_p2>GTACCCAGACAGAGGTATAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>746</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAAACCTCAAAGTGGTTTCTTCTCCATTCTGAAAAATCCAATTTTCTGCGAATTTCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTAC</canonical_amplicon>
		<polymorphic_amplicon>TYTTCAAACCTCAAAGTGGTTTCTTCTCCATTCTGAAAAATCCAATTTTCTGCGAATTTCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33101</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>111671</contig_pos>
        <strand>+</strand>
        <context>CTCAAAGTGG[A/T]TTCTTCTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGAAATTTCTAAATTTTTGAAAATTTTAATTTTCAAACCTCAAAGTGG</left_flank>
        <right_flank>TTCTTCTCCATTCTGAAAAATCCAATTTTCTGCGAATTTCAACAAAAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCATTTCTGAATGGCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCCGAATTTCTGAATTTATGAATTTCTGAATTTCTGAATTTCTTAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTACTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAAATTTCTCGAAATTTAGAGTTCTCGAAAATTCTAAATTTTTGAAATTTCTAAATTTTTGAAAATTTTAATTTTCAAACCTCAAAGTGGTTTCTTCTCCATTCTGAAAAATCCAATTTTCTGCGAATTTCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTACTAAACGCTACACAATTCTCCATTCTGATACATTTTCTCCGTTCTGATACATTTCAAATTCTGATACATTTTCATCATATATTTCCCTGGAAAAACCAATTTTCTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATTTTTTTTAAGTTTTGTTTTTGTGTTTTCATTAGTTTTCATTAGTTTTCAGGGAGTTTTTCGATGGTTTAAGCCTTTTTTGGAAAAGTA</canonical>
            <polymorphic>CGCATTTCTGAATGGCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCCGAATTTCTGAATTTATGAATTTCTGAATTTCTGAATTTCTTAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTACTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAAATTTCTCGAAATTTAGAGTTCTCGAAAATTCTAAATTTTTGAAATTTCTAAATTTTTGAAAATTTTAATTTTCAAACCTCAAAGTGGWTTCTTCTCCATTCTGAAAAATCCAATTTTCTGCGAATTTCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTACTAAACGCTACACAATTCTCCATTCTGATACATTTTCTCCGTTCTGATACATTTCAAATTCTGATACATTTTCATCATATATTTCCCTGGAAAAACCAATTTTCTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATTTTTTTTAAGTTTTGTTTTTGTGTTTTCATTAGTTTTCATTAGTTTTCAGGGAGTTTTTCGATGGTTTAAGCCTTTTTTGGAAAAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGATTTAGTTGGACTTTTTGA</pcr_primer_p1>
		<pcr_primer_p2>GTACCCAGACAGAGGTATAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>746</pcr_amplicon_size>
		<canonical_amplicon>GTTTCTTCTCCATTCTGAAAAATCCAATTTTCTGCGAATTTCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTAC</canonical_amplicon>
		<polymorphic_amplicon>GWTTCTTCTCCATTCTGAAAAATCCAATTTTCTGCGAATTTCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33102</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>111889</contig_pos>
        <strand>+</strand>
        <context>AGACAATTCC[G/T]TTTTTTATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATATTTCCCTGGAAAAACCAATTTTCTCTCTTTTGAATGAGACAATTCC</left_flank>
        <right_flank>TTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTACTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAAATTTCTCGAAATTTAGAGTTCTCGAAAATTCTAAATTTTTGAAATTTCTAAATTTTTGAAAATTTTAATTTTCAAACCTCAAAGTGGTTTCTTCTCCATTCTGAAAAATCCAATTTTCTGCGAATTTCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTACTAAACGCTACACAATTCTCCATTCTGATACATTTTCTCCGTTCTGATACATTTCAAATTCTGATACATTTTCATCATATATTTCCCTGGAAAAACCAATTTTCTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATTTTTTTTAAGTTTTGTTTTTGTGTTTTCATTAGTTTTCATTAGTTTTCAGGGAGTTTTTCGATGGTTTAAGCCTTTTTTGGAAAAGTAGTTTACATGAACCAAAAAATGGGTCAACCTATGTCATTCAGATGACGTCAATCAACGACATTTGATATATCGAAAAAAAAGGAAAAATATTAATAAGAGCAAAAAATACCAATATTAGCAAAAAGGTTTTAGGAAGAGATTATGAAAAAATTTGATAAGATCAGATGAGGATTTGCAAACAATGCAACAAGTTATGTACCACCTTCNNNNNNNNNNTT</canonical>
            <polymorphic>AATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTACTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAAATTTCTCGAAATTTAGAGTTCTCGAAAATTCTAAATTTTTGAAATTTCTAAATTTTTGAAAATTTTAATTTTCAAACCTCAAAGTGGTTTCTTCTCCATTCTGAAAAATCCAATTTTCTGCGAATTTCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTACTAAACGCTACACAATTCTCCATTCTGATACATTTTCTCCGTTCTGATACATTTCAAATTCTGATACATTTTCATCATATATTTCCCTGGAAAAACCAATTTTCTCTCTTTTGAATGAGACAATTCCKTTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATTTTTTTTAAGTTTTGTTTTTGTGTTTTCATTAGTTTTCATTAGTTTTCAGGGAGTTTTTCGATGGTTTAAGCCTTTTTTGGAAAAGTAGTTTACATGAACCAAAAAATGGGTCAACCTATGTCATTCAGATGACGTCAATCAACGACATTTGATATATCGAAAAAAAAGGAAAAATATTAATAAGAGCAAAAAATACCAATATTAGCAAAAAGGTTTTAGGAAGAGATTATGAAAAAATTTGATAAGATCAGATGAGGATTTGCAAACAATGCAACAAGTTATGTACCACCTTCNNNNNNNNNNTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTCAAATTCTGATACATTTTC</pcr_primer_p1>
		<pcr_primer_p2>ACCCCTGACCTTAAGATTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTTCAAATTCTGATACATTTTCATCATATATTTCCCTGGAAAAACCAATTTTCTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGT</canonical_amplicon>
		<polymorphic_amplicon>CATTTCAAATTCTGATACATTTTCATCATATATTTCCCTGGAAAAACCAATTTTCTCTCTTTTGAATGAGACAATTCCKTTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33103</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>111908</contig_pos>
        <strand>+</strand>
        <context>TTTGATTGGA[G/T]TTTTTTGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAATTTTCTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGA</left_flank>
        <right_flank>TTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTACTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAAATTTCTCGAAATTTAGAGTTCTCGAAAATTCTAAATTTTTGAAATTTCTAAATTTTTGAAAATTTTAATTTTCAAACCTCAAAGTGGTTTCTTCTCCATTCTGAAAAATCCAATTTTCTGCGAATTTCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTACTAAACGCTACACAATTCTCCATTCTGATACATTTTCTCCGTTCTGATACATTTCAAATTCTGATACATTTTCATCATATATTTCCCTGGAAAAACCAATTTTCTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATTTTTTTTAAGTTTTGTTTTTGTGTTTTCATTAGTTTTCATTAGTTTTCAGGGAGTTTTTCGATGGTTTAAGCCTTTTTTGGAAAAGTAGTTTACATGAACCAAAAAATGGGTCAACCTATGTCATTCAGATGACGTCAATCAACGACATTTGATATATCGAAAAAAAAGGAAAAATATTAATAAGAGCAAAAAATACCAATATTAGCAAAAAGGTTTTAGGAAGAGATTATGAAAAAATTTGATAAGATCAGATGAGGATTTGCAAACAATGCAACAAGTTATGTACCACCTTCNNNNNNNNNNTTTCGTTTTCTGTTGAGCTAA</canonical>
            <polymorphic>TTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTACTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAAATTTCTCGAAATTTAGAGTTCTCGAAAATTCTAAATTTTTGAAATTTCTAAATTTTTGAAAATTTTAATTTTCAAACCTCAAAGTGGTTTCTTCTCCATTCTGAAAAATCCAATTTTCTGCGAATTTCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTACTAAACGCTACACAATTCTCCATTCTGATACATTTTCTCCGTTCTGATACATTTCAAATTCTGATACATTTTCATCATATATTTCCCTGGAAAAACCAATTTTCTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGAKTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATTTTTTTTAAGTTTTGTTTTTGTGTTTTCATTAGTTTTCATTAGTTTTCAGGGAGTTTTTCGATGGTTTAAGCCTTTTTTGGAAAAGTAGTTTACATGAACCAAAAAATGGGTCAACCTATGTCATTCAGATGACGTCAATCAACGACATTTGATATATCGAAAAAAAAGGAAAAATATTAATAAGAGCAAAAAATACCAATATTAGCAAAAAGGTTTTAGGAAGAGATTATGAAAAAATTTGATAAGATCAGATGAGGATTTGCAAACAATGCAACAAGTTATGTACCACCTTCNNNNNNNNNNTTTCGTTTTCTGTTGAGCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTCAAATTCTGATACATTTTC</pcr_primer_p1>
		<pcr_primer_p2>ACCCCTGACCTTAAGATTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTTCAAATTCTGATACATTTTCATCATATATTTCCCTGGAAAAACCAATTTTCTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGT</canonical_amplicon>
		<polymorphic_amplicon>CATTTCAAATTCTGATACATTTTCATCATATATTTCCCTGGAAAAACCAATTTTCTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGAKTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33104</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>111995</contig_pos>
        <strand>+</strand>
        <context>CACTCCCACA[C/T]TGTGCTACGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACA</left_flank>
        <right_flank>TGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTGAATTTCTGAATTACTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAAATTTCTCGAAATTTAGAGTTCTCGAAAATTCTAAATTTTTGAAATTTCTAAATTTTTGAAAATTTTAATTTTCAAACCTCAAAGTGGTTTCTTCTCCATTCTGAAAAATCCAATTTTCTGCGAATTTCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTACTAAACGCTACACAATTCTCCATTCTGATACATTTTCTCCGTTCTGATACATTTCAAATTCTGATACATTTTCATCATATATTTCCCTGGAAAAACCAATTTTCTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATTTTTTTTAAGTTTTGTTTTTGTGTTTTCATTAGTTTTCATTAGTTTTCAGGGAGTTTTTCGATGGTTTAAGCCTTTTTTGGAAAAGTAGTTTACATGAACCAAAAAATGGGTCAACCTATGTCATTCAGATGACGTCAATCAACGACATTTGATATATCGAAAAAAAAGGAAAAATATTAATAAGAGCAAAAAATACCAATATTAGCAAAAAGGTTTTAGGAAGAGATTATGAAAAAATTTGATAAGATCAGATGAGGATTTGCAAACAATGCAACAAGTTATGTACCACCTTCNNNNNNNNNNTTTCGTTTTCTGTTGAGCTAAGGAGGCCCCGAAGGAGAAAGGGAGGGAGGTCGTACAGGAAAGGGGGCACGGTGGGAGTCGAGGAGGAGGAGAGGTCACTGGGGGAAA</canonical>
            <polymorphic>TTTCTGAATTTCTGAATTACTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAAATTTCTCGAAATTTAGAGTTCTCGAAAATTCTAAATTTTTGAAATTTCTAAATTTTTGAAAATTTTAATTTTCAAACCTCAAAGTGGTTTCTTCTCCATTCTGAAAAATCCAATTTTCTGCGAATTTCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTACTAAACGCTACACAATTCTCCATTCTGATACATTTTCTCCGTTCTGATACATTTCAAATTCTGATACATTTTCATCATATATTTCCCTGGAAAAACCAATTTTCTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACAYTGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATTTTTTTTAAGTTTTGTTTTTGTGTTTTCATTAGTTTTCATTAGTTTTCAGGGAGTTTTTCGATGGTTTAAGCCTTTTTTGGAAAAGTAGTTTACATGAACCAAAAAATGGGTCAACCTATGTCATTCAGATGACGTCAATCAACGACATTTGATATATCGAAAAAAAAGGAAAAATATTAATAAGAGCAAAAAATACCAATATTAGCAAAAAGGTTTTAGGAAGAGATTATGAAAAAATTTGATAAGATCAGATGAGGATTTGCAAACAATGCAACAAGTTATGTACCACCTTCNNNNNNNNNNTTTCGTTTTCTGTTGAGCTAAGGAGGCCCCGAAGGAGAAAGGGAGGGAGGTCGTACAGGAAAGGGGGCACGGTGGGAGTCGAGGAGGAGGAGAGGTCACTGGGGGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTCTTTTGAATGAGACAATTC</pcr_primer_p1>
		<pcr_primer_p2>AATGAAAACACAAAAACAAAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATTTTTTTTAAGTTTTGTTTTTGTGTTTTCATT</canonical_amplicon>
		<polymorphic_amplicon>CTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACAYTGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATTTTTTTTAAGTTTTGTTTTTGTGTTTTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33105</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>112006</contig_pos>
        <strand>+</strand>
        <context>TGTGCTACGT[A/G]TCCTCCTTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGT</left_flank>
        <right_flank>TCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAATTACTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAAATTTCTCGAAATTTAGAGTTCTCGAAAATTCTAAATTTTTGAAATTTCTAAATTTTTGAAAATTTTAATTTTCAAACCTCAAAGTGGTTTCTTCTCCATTCTGAAAAATCCAATTTTCTGCGAATTTCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTACTAAACGCTACACAATTCTCCATTCTGATACATTTTCTCCGTTCTGATACATTTCAAATTCTGATACATTTTCATCATATATTTCCCTGGAAAAACCAATTTTCTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATTTTTTTTAAGTTTTGTTTTTGTGTTTTCATTAGTTTTCATTAGTTTTCAGGGAGTTTTTCGATGGTTTAAGCCTTTTTTGGAAAAGTAGTTTACATGAACCAAAAAATGGGTCAACCTATGTCATTCAGATGACGTCAATCAACGACATTTGATATATCGAAAAAAAAGGAAAAATATTAATAAGAGCAAAAAATACCAATATTAGCAAAAAGGTTTTAGGAAGAGATTATGAAAAAATTTGATAAGATCAGATGAGGATTTGCAAACAATGCAACAAGTTATGTACCACCTTCNNNNNNNNNNTTTCGTTTTCTGTTGAGCTAAGGAGGCCCCGAAGGAGAAAGGGAGGGAGGTCGTACAGGAAAGGGGGCACGGTGGGAGTCGAGGAGGAGGAGAGGTCACTGGGGGAAAATTTGGAGAAT</canonical>
            <polymorphic>CTGAATTACTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAAATTTCTCGAAATTTAGAGTTCTCGAAAATTCTAAATTTTTGAAATTTCTAAATTTTTGAAAATTTTAATTTTCAAACCTCAAAGTGGTTTCTTCTCCATTCTGAAAAATCCAATTTTCTGCGAATTTCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTACTAAACGCTACACAATTCTCCATTCTGATACATTTTCTCCGTTCTGATACATTTCAAATTCTGATACATTTTCATCATATATTTCCCTGGAAAAACCAATTTTCTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGTRTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATTTTTTTTAAGTTTTGTTTTTGTGTTTTCATTAGTTTTCATTAGTTTTCAGGGAGTTTTTCGATGGTTTAAGCCTTTTTTGGAAAAGTAGTTTACATGAACCAAAAAATGGGTCAACCTATGTCATTCAGATGACGTCAATCAACGACATTTGATATATCGAAAAAAAAGGAAAAATATTAATAAGAGCAAAAAATACCAATATTAGCAAAAAGGTTTTAGGAAGAGATTATGAAAAAATTTGATAAGATCAGATGAGGATTTGCAAACAATGCAACAAGTTATGTACCACCTTCNNNNNNNNNNTTTCGTTTTCTGTTGAGCTAAGGAGGCCCCGAAGGAGAAAGGGAGGGAGGTCGTACAGGAAAGGGGGCACGGTGGGAGTCGAGGAGGAGGAGAGGTCACTGGGGGAAAATTTGGAGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>266 163 155 104 84 44 42 30 28 24 21 14 7 7 6 5</canonical_bands>
                <polymorphic_bands>266 163 155 104 84 44 42 35 30 24 21 14 7 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTCTTTTGAATGAGACAATTC</pcr_primer_p1>
		<pcr_primer_p2>AATGAAAACACAAAAACAAAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATTTTTTTTAAGTTTTGTTTTTGTGTTTTCATT</canonical_amplicon>
		<polymorphic_amplicon>CTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGTRTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATTTTTTTTAAGTTTTGTTTTTGTGTTTTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33106</snp_id>
        <super_contig>c007901161.Contig1</super_contig>
        <contig_pos>112142</contig_pos>
        <strand>+</strand>
        <context>AGGGAGTTTT[A/C]CRATGGTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTTTTGTTTTTGTGTTTTCATTAGTTTTCATTAGTTTTCAGGGAGTTTT</left_flank>
        <right_flank>CGATGGTTTAAGCCTTTTTTGGAAAAGTAGTTTACATGAACCAAAAAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTTAATTTTCAAACCTCAAAGTGGTTTCTTCTCCATTCTGAAAAATCCAATTTTCTGCGAATTTCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTACTAAACGCTACACAATTCTCCATTCTGATACATTTTCTCCGTTCTGATACATTTCAAATTCTGATACATTTTCATCATATATTTCCCTGGAAAAACCAATTTTCTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATTTTTTTTAAGTTTTGTTTTTGTGTTTTCATTAGTTTTCATTAGTTTTCAGGGAGTTTTTCGATGGTTTAAGCCTTTTTTGGAAAAGTAGTTTACATGAACCAAAAAATGGGTCAACCTATGTCATTCAGATGACGTCAATCAACGACATTTGATATATCGAAAAAAAAGGAAAAATATTAATAAGAGCAAAAAATACCAATATTAGCAAAAAGGTTTTAGGAAGAGATTATGAAAAAATTTGATAAGATCAGATGAGGATTTGCAAACAATGCAACAAGTTATGTACCACCTTCNNNNNNNNNNTTTCGTTTTCTGTTGAGCTAAGGAGGCCCCGAAGGAGAAAGGGAGGGAGGTCGTACAGGAAAGGGGGCACGGTGGGAGTCGAGGAGGAGGAGAGGTCACTGGGGGAAAATTTGGAGAATTTCGGGGTAATAGGAAATGTTCTAAAAAATTAGAAAAATGGGTTTCGGTACTTAAAAATTCAAATTTTCAAAGGGATTACAATAGTTTTTATTTAGGGTACAAGAGAACAAAAATAAAAATAAAAAAACAAATTTT</canonical>
            <polymorphic>AAATTTTAATTTTCAAACCTCAAAGTGGTTTCTTCTCCATTCTGAAAAATCCAATTTTCTGCGAATTTCAACAAAAAAGAAATGTCTAGAATATAAATTTTTATACCTCTGTCTGGGTACTAAACGCTACACAATTCTCCATTCTGATACATTTTCTCCGTTCTGATACATTTCAAATTCTGATACATTTTCATCATATATTTCCCTGGAAAAACCAATTTTCTCTCTTTTGAATGAGACAATTCCTTTTTTTATTTTGATTGGATTTTTTTGATTTTTGAATCCACCCAAATACCTTCACGGGGAACTTAAAAGTAACGAGAGGGCGCGCCCTCTTGTACGCACTCCCACATTGTGCTACGTGTCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATTTTTTTTAAGTTTTGTTTTTGTGTTTTCATTAGTTTTCATTAGTTTTCAGGGAGTTTTMCGATGGTTTAAGCCTTTTTTGGAAAAGTAGTTTACATGAACCAAAAAATGGGTCAACCTATGTCATTCAGATGACGTCAATCAACGACATTTGATATATCGAAAAAAAAGGAAAAATATTAATAAGAGCAAAAAATACCAATATTAGCAAAAAGGTTTTAGGAAGAGATTATGAAAAAATTTGATAAGATCAGATGAGGATTTGCAAACAATGCAACAAGTTATGTACCACCTTCNNNNNNNNNNTTTCGTTTTCTGTTGAGCTAAGGAGGCCCCGAAGGAGAAAGGGAGGGAGGTCGTACAGGAAAGGGGGCACGGTGGGAGTCGAGGAGGAGGAGAGGTCACTGGGGGAAAATTTGGAGAATTTCGGGGTAATAGGAAATGTTCTAAAAAATTAGAAAAATGGGTTTCGGTACTTAAAAATTCAAATTTTCAAAGGGATTACAATAGTTTTTATTTAGGGTACAAGAGAACAAAAATAAAAATAAAAAAACAAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>420 225 175 99 81</canonical_bands>
                <polymorphic_bands>420 225 180 175</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGAGCGTGAGACTTTTAATCTT</pcr_primer_p1>
		<pcr_primer_p2>TGCTCTTATTAATATTTTTCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATTTTTTTTAAGTTTTGTTTTTGTGTTTTCATTAGTTTTCATTAGTTTTCAGGGAGTTTTTCGATGGTTTAAGCCTTTTTTGGAAAAGTAGTTTACATGAACCAAAAAATGGGTCAACCTATGTCATTCAGATGACGTCAATCAACGACATTTGATATATCGAAAAAAAAGGAAAAATATTAATAAGAGCA</canonical_amplicon>
		<polymorphic_amplicon>TAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATTTTTTTTAAGTTTTGTTTTTGTGTTTTCATTAGTTTTCATTAGTTTTCAGGGAGTTTTMCGATGGTTTAAGCCTTTTTTGGAAAAGTAGTTTACATGAACCAAAAAATGGGTCAACCTATGTCATTCAGATGACGTCAATCAACGACATTTGATATATCGAAAAAAAAGGAAAAATATTAATAAGAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33107</snp_id>
        <super_contig>c008000613.Contig3</super_contig>
        <contig_pos>26163</contig_pos>
        <strand></strand>
        <context>taacattttt[T/G]aaatgaaaag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTAGATAATATTGACGTTACAATACTATTCTTTCCATACATAACATTTTT</left_flank>
        <right_flank>AAATGAAAAGTTTCCAAAAAGTGGTGGTAAACTACAAACAAAATTAGTAC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATGTGGGAAAACTAGCTGAAGAATAGCTGAAGCTGAAGAGCTAGCTGACTTGCTGAAGAGCTCTTTTCAACTGAAAAAGTCTTTGAGCGGGTTCCAGAAAAAACGTTTTTATCACTGAGAGGCAACCAGGGTGATAAGGGAAAAGTCCAGATGCCGTATTCATGAAATTTACTTTTGTAAATCATTTACTCTAAAAAAATCAACTGAATCATTTTACAAAAGGTAAATGGAAGCGTGAAAATGTACTGAAAATTTTTTTCTCATTTGTAAATATTTTTCCTGTTTTTTAGGTAGGAAAACAACTTCGAACTAGAATTTCTCGACTTTAAACTGAAAAATGCTCATTTTTGACACATTACTTTAAATTGAATGTTCTTTCCATTCATGTCATTTGTAGTAAAAGTCATAATTTTCGAGTTGAACAGAAACGAAATATGTGTTTAAAGTTAGATAATATTGACGTTACAATACTATTCTTTCCATACATAACATTTTTTAAATGAAAAGTTTCCAAAAAGTGGTGGTAAACTACAAACAAAATTAGTACCCCTATTTACCAAAAAGAGGGGTATTTACCAAAAATTAAATGTTTTTTTTTTCAATTTTCACGTTTTTCAGTTGATTTTTGAGAGTAAATGATTTGCGAAAGTAAATGTTCATGAATTTAGCCCCAGAAGAACAAAATTTAGAGAAAAAGAGTAGGAAACAAAATTGGGAATCTTGAAAGCTTTATTATAACAAAGAATAAGTTAGAAAATAAATGTTAAAACCACAGTAAAATTTATTTTTAGAGATCAATTGACATGAGAAGCTGGAAAAAATTTGTATTGAATATCATATATATAAACAACTTGCTAGAAAGCTCGGCGGAGAATTTTTCGAATTGGGGTTTGTTCGTTTCCTTCAAGTCCATTGATTACCATCGATCCTGGAAAAAGCATCAAAAATTTATGATGAAACTAACGATGGTTTAGAATTCCTGCTTTTCTGAAAAATT</canonical>
            <polymorphic>AAAATGTGGGAAAACTAGCTGAAGAATAGCTGAAGCTGAAGAGCTAGCTGACTTGCTGAAGAGCTCTTTTCAACTGAAAAAGTCTTTGAGCGGGTTCCAGAAAAAACGTTTTTATCACTGAGAGGCAACCAGGGTGATAAGGGAAAAGTCCAGATGCCGTATTCATGAAATTTACTTTTGTAAATCATTTACTCTAAAAAAATCAACTGAATCATTTTACAAAAGGTAAATGGAAGCGTGAAAATGTACTGAAAATTTTTTTCTCATTTGTAAATATTTTTCCTGTTTTTTAGGTAGGAAAACAACTTCGAACTAGAATTTCTCGACTTTAAACTGAAAAATGCTCATTTTTGACACATTACTTTAAATTGAATGTTCTTTCCATTCATGTCATTTGTAGTAAAAGTCATAATTTTCGAGTTGAACAGAAACGAAATATGTGTTTAAAGTTAGATAATATTGACGTTACAATACTATTCTTTCCATACATAACATTTTTKAAATGAAAAGTTTCCAAAAAGTGGTGGTAAACTACAAACAAAATTAGTACCCCTATTTACCAAAAAGAGGGGTATTTACCAAAAATTAAATGTTTTTTTTTTCAATTTTCACGTTTTTCAGTTGATTTTTGAGAGTAAATGATTTGCGAAAGTAAATGTTCATGAATTTAGCCCCAGAAGAACAAAATTTAGAGAAAAAGAGTAGGAAACAAAATTGGGAATCTTGAAAGCTTTATTATAACAAAGAATAAGTTAGAAAATAAATGTTAAAACCACAGTAAAATTTATTTTTAGAGATCAATTGACATGAGAAGCTGGAAAAAATTTGTATTGAATATCATATATATAAACAACTTGCTAGAAAGCTCGGCGGAGAATTTTTCGAATTGGGGTTTGTTCGTTTCCTTCAAGTCCATTGATTACCATCGATCCTGGAAAAAGCATCAAAAATTTATGATGAAACTAACGATGGTTTAGAATTCCTGCTTTTCTGAAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 330 80 55 35</canonical_bands>
                <polymorphic_bands>555 330 80 35</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>329 233 181 87 80 55 35</canonical_bands>
                <polymorphic_bands>329 233 181 142 80 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATAAGGGAAAAGTCCAGAT</pcr_primer_p1>
		<pcr_primer_p2>TCTTTTTCTCTAAATTTTGTTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>567</pcr_amplicon_size>
		<canonical_amplicon>TGATAAGGGAAAAGTCCAGATGCCGTATTCATGAAATTTACTTTTGTAAATCATTTACTCTAAAAAAATCAACTGAATCATTTTACAAAAGGTAAATGGAAGCGTGAAAATGTACTGAAAATTTTTTTCTCATTTGTAAATATTTTTCCTGTTTTTTAGGTAGGAAAACAACTTCGAACTAGAATTTCTCGACTTTAAACTGAAAAATGCTCATTTTTGACACATTACTTTAAATTGAATGTTCTTTCCATTCATGTCATTTGTAGTAAAAGTCATAATTTTCGAGTTGAACAGAAACGAAATATGTGTTTAAAGTTAGATAATATTGACGTTACAATACTATTCTTTCCATACATAACATTTTTTAAATGAAAAGTTTCCAAAAAGTGGTGGTAAACTACAAACAAAATTAGTACCCCTATTTACCAAAAAGAGGGGTATTTACCAAAAATTAAATGTTTTTTTTTTCAATTTTCACGTTTTTCAGTTGATTTTTGAGAGTAAATGATTTGCGAAAGTAAATGTTCATGAATTTAGCCCCAGAAGAACAAAATTTAGAGAAAAAGA</canonical_amplicon>
		<polymorphic_amplicon>TGATAAGGGAAAAGTCCAGATGCCGTATTCATGAAATTTACTTTTGTAAATCATTTACTCTAAAAAAATCAACTGAATCATTTTACAAAAGGTAAATGGAAGCGTGAAAATGTACTGAAAATTTTTTTCTCATTTGTAAATATTTTTCCTGTTTTTTAGGTAGGAAAACAACTTCGAACTAGAATTTCTCGACTTTAAACTGAAAAATGCTCATTTTTGACACATTACTTTAAATTGAATGTTCTTTCCATTCATGTCATTTGTAGTAAAAGTCATAATTTTCGAGTTGAACAGAAACGAAATATGTGTTTAAAGTTAGATAATATTGACGTTACAATACTATTCTTTCCATACATAACATTTTTKAAATGAAAAGTTTCCAAAAAGTGGTGGTAAACTACAAACAAAATTAGTACCCCTATTTACCAAAAAGAGGGGTATTTACCAAAAATTAAATGTTTTTTTTTTCAATTTTCACGTTTTTCAGTTGATTTTTGAGAGTAAATGATTTGCGAAAGTAAATGTTCATGAATTTAGCCCCAGAAGAACAAAATTTAGAGAAAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33108</snp_id>
        <super_contig>c008000613.Contig3</super_contig>
        <contig_pos>26195</contig_pos>
        <strand></strand>
        <context>tggtggtaaa[C/T]tacaaacaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCATACATAACATTTTTTAAATGAAAAGTTTCCAAAAAGTGGTGGTAAA</left_flank>
        <right_flank>TACAAACAAAATTAGTACCCCTATTTACCAAAAAGAGGGGTATTTACCAA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCTGAAGAGCTAGCTGACTTGCTGAAGAGCTCTTTTCAACTGAAAAAGTCTTTGAGCGGGTTCCAGAAAAAACGTTTTTATCACTGAGAGGCAACCAGGGTGATAAGGGAAAAGTCCAGATGCCGTATTCATGAAATTTACTTTTGTAAATCATTTACTCTAAAAAAATCAACTGAATCATTTTACAAAAGGTAAATGGAAGCGTGAAAATGTACTGAAAATTTTTTTCTCATTTGTAAATATTTTTCCTGTTTTTTAGGTAGGAAAACAACTTCGAACTAGAATTTCTCGACTTTAAACTGAAAAATGCTCATTTTTGACACATTACTTTAAATTGAATGTTCTTTCCATTCATGTCATTTGTAGTAAAAGTCATAATTTTCGAGTTGAACAGAAACGAAATATGTGTTTAAAGTTAGATAATATTGACGTTACAATACTATTCTTTCCATACATAACATTTTTTAAATGAAAAGTTTCCAAAAAGTGGTGGTAAACTACAAACAAAATTAGTACCCCTATTTACCAAAAAGAGGGGTATTTACCAAAAATTAAATGTTTTTTTTTTCAATTTTCACGTTTTTCAGTTGATTTTTGAGAGTAAATGATTTGCGAAAGTAAATGTTCATGAATTTAGCCCCAGAAGAACAAAATTTAGAGAAAAAGAGTAGGAAACAAAATTGGGAATCTTGAAAGCTTTATTATAACAAAGAATAAGTTAGAAAATAAATGTTAAAACCACAGTAAAATTTATTTTTAGAGATCAATTGACATGAGAAGCTGGAAAAAATTTGTATTGAATATCATATATATAAACAACTTGCTAGAAAGCTCGGCGGAGAATTTTTCGAATTGGGGTTTGTTCGTTTCCTTCAAGTCCATTGATTACCATCGATCCTGGAAAAAGCATCAAAAATTTATGATGAAACTAACGATGGTTTAGAATTCCTGCTTTTCTGAAAAATTGTCAGATCTACTTCTTACTAAGGAAACTTTTC</canonical>
            <polymorphic>AAGCTGAAGAGCTAGCTGACTTGCTGAAGAGCTCTTTTCAACTGAAAAAGTCTTTGAGCGGGTTCCAGAAAAAACGTTTTTATCACTGAGAGGCAACCAGGGTGATAAGGGAAAAGTCCAGATGCCGTATTCATGAAATTTACTTTTGTAAATCATTTACTCTAAAAAAATCAACTGAATCATTTTACAAAAGGTAAATGGAAGCGTGAAAATGTACTGAAAATTTTTTTCTCATTTGTAAATATTTTTCCTGTTTTTTAGGTAGGAAAACAACTTCGAACTAGAATTTCTCGACTTTAAACTGAAAAATGCTCATTTTTGACACATTACTTTAAATTGAATGTTCTTTCCATTCATGTCATTTGTAGTAAAAGTCATAATTTTCGAGTTGAACAGAAACGAAATATGTGTTTAAAGTTAGATAATATTGACGTTACAATACTATTCTTTCCATACATAACATTTTTTAAATGAAAAGTTTCCAAAAAGTGGTGGTAAAYTACAAACAAAATTAGTACCCCTATTTACCAAAAAGAGGGGTATTTACCAAAAATTAAATGTTTTTTTTTTCAATTTTCACGTTTTTCAGTTGATTTTTGAGAGTAAATGATTTGCGAAAGTAAATGTTCATGAATTTAGCCCCAGAAGAACAAAATTTAGAGAAAAAGAGTAGGAAACAAAATTGGGAATCTTGAAAGCTTTATTATAACAAAGAATAAGTTAGAAAATAAATGTTAAAACCACAGTAAAATTTATTTTTAGAGATCAATTGACATGAGAAGCTGGAAAAAATTTGTATTGAATATCATATATATAAACAACTTGCTAGAAAGCTCGGCGGAGAATTTTTCGAATTGGGGTTTGTTCGTTTCCTTCAAGTCCATTGATTACCATCGATCCTGGAAAAAGCATCAAAAATTTATGATGAAACTAACGATGGTTTAGAATTCCTGCTTTTCTGAAAAATTGTCAGATCTACTTCTTACTAAGGAAACTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATAAGGGAAAAGTCCAGAT</pcr_primer_p1>
		<pcr_primer_p2>TCTTTTTCTCTAAATTTTGTTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>567</pcr_amplicon_size>
		<canonical_amplicon>TGATAAGGGAAAAGTCCAGATGCCGTATTCATGAAATTTACTTTTGTAAATCATTTACTCTAAAAAAATCAACTGAATCATTTTACAAAAGGTAAATGGAAGCGTGAAAATGTACTGAAAATTTTTTTCTCATTTGTAAATATTTTTCCTGTTTTTTAGGTAGGAAAACAACTTCGAACTAGAATTTCTCGACTTTAAACTGAAAAATGCTCATTTTTGACACATTACTTTAAATTGAATGTTCTTTCCATTCATGTCATTTGTAGTAAAAGTCATAATTTTCGAGTTGAACAGAAACGAAATATGTGTTTAAAGTTAGATAATATTGACGTTACAATACTATTCTTTCCATACATAACATTTTTTAAATGAAAAGTTTCCAAAAAGTGGTGGTAAACTACAAACAAAATTAGTACCCCTATTTACCAAAAAGAGGGGTATTTACCAAAAATTAAATGTTTTTTTTTTCAATTTTCACGTTTTTCAGTTGATTTTTGAGAGTAAATGATTTGCGAAAGTAAATGTTCATGAATTTAGCCCCAGAAGAACAAAATTTAGAGAAAAAGA</canonical_amplicon>
		<polymorphic_amplicon>TGATAAGGGAAAAGTCCAGATGCCGTATTCATGAAATTTACTTTTGTAAATCATTTACTCTAAAAAAATCAACTGAATCATTTTACAAAAGGTAAATGGAAGCGTGAAAATGTACTGAAAATTTTTTTCTCATTTGTAAATATTTTTCCTGTTTTTTAGGTAGGAAAACAACTTCGAACTAGAATTTCTCGACTTTAAACTGAAAAATGCTCATTTTTGACACATTACTTTAAATTGAATGTTCTTTCCATTCATGTCATTTGTAGTAAAAGTCATAATTTTCGAGTTGAACAGAAACGAAATATGTGTTTAAAGTTAGATAATATTGACGTTACAATACTATTCTTTCCATACATAACATTTTTTAAATGAAAAGTTTCCAAAAAGTGGTGGTAAAYTACAAACAAAATTAGTACCCCTATTTACCAAAAAGAGGGGTATTTACCAAAAATTAAATGTTTTTTTTTTCAATTTTCACGTTTTTCAGTTGATTTTTGAGAGTAAATGATTTGCGAAAGTAAATGTTCATGAATTTAGCCCCAGAAGAACAAAATTTAGAGAAAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33109</snp_id>
        <super_contig>c008000613.Contig3</super_contig>
        <contig_pos>26311</contig_pos>
        <strand></strand>
        <context>aatgatttgc[G/A]aaagtaaatg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTTCAATTTTCACGTTTTTCAGTTGATTTTTGAGAGTAAATGATTTGC</left_flank>
        <right_flank>AAAGTAAATGTTCATGAATTTAGCCCCAGAAGAACAAAATTTAGAGAAAA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAGATGCCGTATTCATGAAATTTACTTTTGTAAATCATTTACTCTAAAAAAATCAACTGAATCATTTTACAAAAGGTAAATGGAAGCGTGAAAATGTACTGAAAATTTTTTTCTCATTTGTAAATATTTTTCCTGTTTTTTAGGTAGGAAAACAACTTCGAACTAGAATTTCTCGACTTTAAACTGAAAAATGCTCATTTTTGACACATTACTTTAAATTGAATGTTCTTTCCATTCATGTCATTTGTAGTAAAAGTCATAATTTTCGAGTTGAACAGAAACGAAATATGTGTTTAAAGTTAGATAATATTGACGTTACAATACTATTCTTTCCATACATAACATTTTTTAAATGAAAAGTTTCCAAAAAGTGGTGGTAAACTACAAACAAAATTAGTACCCCTATTTACCAAAAAGAGGGGTATTTACCAAAAATTAAATGTTTTTTTTTTCAATTTTCACGTTTTTCAGTTGATTTTTGAGAGTAAATGATTTGCGAAAGTAAATGTTCATGAATTTAGCCCCAGAAGAACAAAATTTAGAGAAAAAGAGTAGGAAACAAAATTGGGAATCTTGAAAGCTTTATTATAACAAAGAATAAGTTAGAAAATAAATGTTAAAACCACAGTAAAATTTATTTTTAGAGATCAATTGACATGAGAAGCTGGAAAAAATTTGTATTGAATATCATATATATAAACAACTTGCTAGAAAGCTCGGCGGAGAATTTTTCGAATTGGGGTTTGTTCGTTTCCTTCAAGTCCATTGATTACCATCGATCCTGGAAAAAGCATCAAAAATTTATGATGAAACTAACGATGGTTTAGAATTCCTGCTTTTCTGAAAAATTGTCAGATCTACTTCTTACTAAGGAAACTTTTCTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG</canonical>
            <polymorphic>TCCAGATGCCGTATTCATGAAATTTACTTTTGTAAATCATTTACTCTAAAAAAATCAACTGAATCATTTTACAAAAGGTAAATGGAAGCGTGAAAATGTACTGAAAATTTTTTTCTCATTTGTAAATATTTTTCCTGTTTTTTAGGTAGGAAAACAACTTCGAACTAGAATTTCTCGACTTTAAACTGAAAAATGCTCATTTTTGACACATTACTTTAAATTGAATGTTCTTTCCATTCATGTCATTTGTAGTAAAAGTCATAATTTTCGAGTTGAACAGAAACGAAATATGTGTTTAAAGTTAGATAATATTGACGTTACAATACTATTCTTTCCATACATAACATTTTTTAAATGAAAAGTTTCCAAAAAGTGGTGGTAAACTACAAACAAAATTAGTACCCCTATTTACCAAAAAGAGGGGTATTTACCAAAAATTAAATGTTTTTTTTTTCAATTTTCACGTTTTTCAGTTGATTTTTGAGAGTAAATGATTTGCRAAAGTAAATGTTCATGAATTTAGCCCCAGAAGAACAAAATTTAGAGAAAAAGAGTAGGAAACAAAATTGGGAATCTTGAAAGCTTTATTATAACAAAGAATAAGTTAGAAAATAAATGTTAAAACCACAGTAAAATTTATTTTTAGAGATCAATTGACATGAGAAGCTGGAAAAAATTTGTATTGAATATCATATATATAAACAACTTGCTAGAAAGCTCGGCGGAGAATTTTTCGAATTGGGGTTTGTTCGTTTCCTTCAAGTCCATTGATTACCATCGATCCTGGAAAAAGCATCAAAAATTTATGATGAAACTAACGATGGTTTAGAATTCCTGCTTTTCTGAAAAATTGTCAGATCTACTTCTTACTAAGGAAACTTTTCTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATAAGGGAAAAGTCCAGAT</pcr_primer_p1>
		<pcr_primer_p2>CCTACTCTTTTTCTCTAAATTTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>572</pcr_amplicon_size>
		<canonical_amplicon>CGAAAGTAAATGTTCATGAATTTAGCCCCAGAAGAACAAAATTTAGAGAAAAAGAGTAGG</canonical_amplicon>
		<polymorphic_amplicon>CRAAAGTAAATGTTCATGAATTTAGCCCCAGAAGAACAAAATTTAGAGAAAAAGAGTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33110</snp_id>
        <super_contig>c008000613.Contig3</super_contig>
        <contig_pos>26334</contig_pos>
        <strand></strand>
        <context>catgaattta[G/T]ccccAGAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTGATTTTTGAGAGTAAATGATTTGCGAAAGTAAATGTTCATGAATTTA</left_flank>
        <right_flank>CCCCAGAAGAACAAAATTTAGAGAAAAAGAGTAGGAAACAAAATTGGGAA</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACTTTTGTAAATCATTTACTCTAAAAAAATCAACTGAATCATTTTACAAAAGGTAAATGGAAGCGTGAAAATGTACTGAAAATTTTTTTCTCATTTGTAAATATTTTTCCTGTTTTTTAGGTAGGAAAACAACTTCGAACTAGAATTTCTCGACTTTAAACTGAAAAATGCTCATTTTTGACACATTACTTTAAATTGAATGTTCTTTCCATTCATGTCATTTGTAGTAAAAGTCATAATTTTCGAGTTGAACAGAAACGAAATATGTGTTTAAAGTTAGATAATATTGACGTTACAATACTATTCTTTCCATACATAACATTTTTTAAATGAAAAGTTTCCAAAAAGTGGTGGTAAACTACAAACAAAATTAGTACCCCTATTTACCAAAAAGAGGGGTATTTACCAAAAATTAAATGTTTTTTTTTTCAATTTTCACGTTTTTCAGTTGATTTTTGAGAGTAAATGATTTGCGAAAGTAAATGTTCATGAATTTAGCCCCAGAAGAACAAAATTTAGAGAAAAAGAGTAGGAAACAAAATTGGGAATCTTGAAAGCTTTATTATAACAAAGAATAAGTTAGAAAATAAATGTTAAAACCACAGTAAAATTTATTTTTAGAGATCAATTGACATGAGAAGCTGGAAAAAATTTGTATTGAATATCATATATATAAACAACTTGCTAGAAAGCTCGGCGGAGAATTTTTCGAATTGGGGTTTGTTCGTTTCCTTCAAGTCCATTGATTACCATCGATCCTGGAAAAAGCATCAAAAATTTATGATGAAACTAACGATGGTTTAGAATTCCTGCTTTTCTGAAAAATTGTCAGATCTACTTCTTACTAAGGAAACTTTTCTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGT</canonical>
            <polymorphic>TTACTTTTGTAAATCATTTACTCTAAAAAAATCAACTGAATCATTTTACAAAAGGTAAATGGAAGCGTGAAAATGTACTGAAAATTTTTTTCTCATTTGTAAATATTTTTCCTGTTTTTTAGGTAGGAAAACAACTTCGAACTAGAATTTCTCGACTTTAAACTGAAAAATGCTCATTTTTGACACATTACTTTAAATTGAATGTTCTTTCCATTCATGTCATTTGTAGTAAAAGTCATAATTTTCGAGTTGAACAGAAACGAAATATGTGTTTAAAGTTAGATAATATTGACGTTACAATACTATTCTTTCCATACATAACATTTTTTAAATGAAAAGTTTCCAAAAAGTGGTGGTAAACTACAAACAAAATTAGTACCCCTATTTACCAAAAAGAGGGGTATTTACCAAAAATTAAATGTTTTTTTTTTCAATTTTCACGTTTTTCAGTTGATTTTTGAGAGTAAATGATTTGCGAAAGTAAATGTTCATGAATTTAKCCCCAGAAGAACAAAATTTAGAGAAAAAGAGTAGGAAACAAAATTGGGAATCTTGAAAGCTTTATTATAACAAAGAATAAGTTAGAAAATAAATGTTAAAACCACAGTAAAATTTATTTTTAGAGATCAATTGACATGAGAAGCTGGAAAAAATTTGTATTGAATATCATATATATAAACAACTTGCTAGAAAGCTCGGCGGAGAATTTTTCGAATTGGGGTTTGTTCGTTTCCTTCAAGTCCATTGATTACCATCGATCCTGGAAAAAGCATCAAAAATTTATGATGAAACTAACGATGGTTTAGAATTCCTGCTTTTCTGAAAAATTGTCAGATCTACTTCTTACTAAGGAAACTTTTCTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>500 306 84 59 51</canonical_bands>
                <polymorphic_bands>559 306 84 51</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATAAGGGAAAAGTCCAGAT</pcr_primer_p1>
		<pcr_primer_p2>GATTCCCAATTTTGTTTCCTA</pcr_primer_p2>
		<pcr_amplicon_size>589</pcr_amplicon_size>
		<canonical_amplicon>AGCCCCAGAAGAACAAAATTTAGAGAAAAAGAGTAGGAAACAAAATTGGGAATC</canonical_amplicon>
		<polymorphic_amplicon>AKCCCCAGAAGAACAAAATTTAGAGAAAAAGAGTAGGAAACAAAATTGGGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33111</snp_id>
        <super_contig>c008000613.Contig3</super_contig>
        <contig_pos>30474</contig_pos>
        <strand>+</strand>
        <context>TGTCTAAATT[A/T]RAAAAAACAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTAAAAAAGTAGAATGAAATGGAAAAATGTATATAATTTTGTCTAAATT</left_flank>
        <right_flank>GAAAAAACAGTTTTTTTAATCAGTGAATATATTCAGAAAGAGTAATTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCTGACTATTTTTTTTCTGCTCTTTGAGTCGTGGTGGGAAATTAAAGGTAAGTACAATCGTTTTCAATTGTTTTGATATTTTGAAATTATACCAAAAATGATTATGTGTCGGTGGGACACTAATTTCCTGTTTCAATAAAAGTTTATTTTCAAGCATAATTGCAACGGGCCGAGCCACTAATAGGATTTTCACTGCGCGGTCCAACCCTAGGCTAGCCCGTCTTTTACATTTAAATATTTCCACTTAAAAAATGGTAAAATTTATTTAATTAAAAAAGAAAAAAAGATTTCTAGGGTTCGGCCCGGGTATATTATATTTTAATGGCACTCTTATCTTGGAAAATTTTTACATGACAGAATAATTGTTTCGATTTTTTTTTGGGTATTCTAAAAAAAGCCGACCGGTCCGTTGCAGGTATGGAAAAAAGTTAGATTGTTTAACAGATCTAAAAAAGTAGAATGAAATGGAAAAATGTATATAATTTTGTCTAAATTAGAAAAAACAGTTTTTTTAATCAGTGAATATATTCAGAAAGAGTAATTTTTTCTTTTTTGACTATGATTCCAGTCGCTGGAAACTTTTGAAAATAGATAGTTAATAACTGCTTTAAATTTTTTGATTGTTTTCTTCATTATAAAAAATTCTCAAAATTCATTAAAATGTTTGGGTACTATATTGAAAATTCTGAATAGATGCTATATTGAAAATACTGAAAATTCTGAAACTTTGATTCATTGAAAAGGGAAATTAAACACGTTTCCAACTCAGATTTTGTTTAAAAACTCAGGATATGTCAAGAGTAGCCTAACTAAACATGTCCAAAAATTTTAGAATCCGCTCGTCTGTTTCAGTGGAACTATATTAGTTTCAGTTTTTAAAGACGATATTCTCAACTTTTACAACGTTTCAGAACATGAGATTCGTTTTTTTTGTTAGTTAAATTTCGATGATATTTCATAATTCAAACGAAAAAAAAACTAATTTTTTTGCATTTT</canonical>
            <polymorphic>TTTTTCTGACTATTTTTTTTCTGCTCTTTGAGTCGTGGTGGGAAATTAAAGGTAAGTACAATCGTTTTCAATTGTTTTGATATTTTGAAATTATACCAAAAATGATTATGTGTCGGTGGGACACTAATTTCCTGTTTCAATAAAAGTTTATTTTCAAGCATAATTGCAACGGGCCGAGCCACTAATAGGATTTTCACTGCGCGGTCCAACCCTAGGCTAGCCCGTCTTTTACATTTAAATATTTCCACTTAAAAAATGGTAAAATTTATTTAATTAAAAAAGAAAAAAAGATTTCTAGGGTTCGGCCCGGGTATATTATATTTTAATGGCACTCTTATCTTGGAAAATTTTTACATGACAGAATAATTGTTTCGATTTTTTTTTGGGTATTCTAAAAAAAGCCGACCGGTCCGTTGCAGGTATGGAAAAAAGTTAGATTGTTTAACAGATCTAAAAAAGTAGAATGAAATGGAAAAATGTATATAATTTTGTCTAAATTWGAAAAAACAGTTTTTTTAATCAGTGAATATATTCAGAAAGAGTAATTTTTTCTTTTTTGACTATGATTCCAGTCGCTGGAAACTTTTGAAAATAGATAGTTAATAACTGCTTTAAATTTTTTGATTGTTTTCTTCATTATAAAAAATTCTCAAAATTCATTAAAATGTTTGGGTACTATATTGAAAATTCTGAATAGATGCTATATTGAAAATACTGAAAATTCTGAAACTTTGATTCATTGAAAAGGGAAATTAAACACGTTTCCAACTCAGATTTTGTTTAAAAACTCAGGATATGTCAAGAGTAGCCTAACTAAACATGTCCAAAAATTTTAGAATCCGCTCGTCTGTTTCAGTGGAACTATATTAGTTTCAGTTTTTAAAGACGATATTCTCAACTTTTACAACGTTTCAGAACATGAGATTCGTTTTTTTTGTTAGTTAAATTTCGATGATATTTCATAATTCAAACGAAAAAAAAACTAATTTTTTTGCATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTAATGGCACTCTTATCTTG</pcr_primer_p1>
		<pcr_primer_p2>CGACTGGAATCATAGTCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATTTTAATGGCACTCTTATCTTGGAAAATTTTTACATGACAGAATAATTGTTTCGATTTTTTTTTGGGTATTCTAAAAAAAGCCGACCGGTCCGTTGCAGGTATGGAAAAAAGTTAGATTGTTTAACAGATCTAAAAAAGTAGAATGAAATGGAAAAATGTATATAATTTTGTCTAAATTAGAAAAAACAGTTTTTTTAATCAGTGAATATATTCAGAAAGAGTAATTTTTTCTTTTTTGACTATGATTCCAGTCG</canonical_amplicon>
		<polymorphic_amplicon>ATTTTAATGGCACTCTTATCTTGGAAAATTTTTACATGACAGAATAATTGTTTCGATTTTTTTTTGGGTATTCTAAAAAAAGCCGACCGGTCCGTTGCAGGTATGGAAAAAAGTTAGATTGTTTAACAGATCTAAAAAAGTAGAATGAAATGGAAAAATGTATATAATTTTGTCTAAATTWGAAAAAACAGTTTTTTTAATCAGTGAATATATTCAGAAAGAGTAATTTTTTCTTTTTTGACTATGATTCCAGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33112</snp_id>
        <super_contig>c008000613.Contig3</super_contig>
        <contig_pos>30475</contig_pos>
        <strand>+</strand>
        <context>GTCTAAATTW[A/G]AAAAAACAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAAAAAAGTAGAATGAAATGGAAAAATGTATATAATTTTGTCTAAATTA</left_flank>
        <right_flank>AAAAAACAGTTTTTTTAATCAGTGAATATATTCAGAAAGAGTAATTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCTGACTATTTTTTTTCTGCTCTTTGAGTCGTGGTGGGAAATTAAAGGTAAGTACAATCGTTTTCAATTGTTTTGATATTTTGAAATTATACCAAAAATGATTATGTGTCGGTGGGACACTAATTTCCTGTTTCAATAAAAGTTTATTTTCAAGCATAATTGCAACGGGCCGAGCCACTAATAGGATTTTCACTGCGCGGTCCAACCCTAGGCTAGCCCGTCTTTTACATTTAAATATTTCCACTTAAAAAATGGTAAAATTTATTTAATTAAAAAAGAAAAAAAGATTTCTAGGGTTCGGCCCGGGTATATTATATTTTAATGGCACTCTTATCTTGGAAAATTTTTACATGACAGAATAATTGTTTCGATTTTTTTTTGGGTATTCTAAAAAAAGCCGACCGGTCCGTTGCAGGTATGGAAAAAAGTTAGATTGTTTAACAGATCTAAAAAAGTAGAATGAAATGGAAAAATGTATATAATTTTGTCTAAATTAGAAAAAACAGTTTTTTTAATCAGTGAATATATTCAGAAAGAGTAATTTTTTCTTTTTTGACTATGATTCCAGTCGCTGGAAACTTTTGAAAATAGATAGTTAATAACTGCTTTAAATTTTTTGATTGTTTTCTTCATTATAAAAAATTCTCAAAATTCATTAAAATGTTTGGGTACTATATTGAAAATTCTGAATAGATGCTATATTGAAAATACTGAAAATTCTGAAACTTTGATTCATTGAAAAGGGAAATTAAACACGTTTCCAACTCAGATTTTGTTTAAAAACTCAGGATATGTCAAGAGTAGCCTAACTAAACATGTCCAAAAATTTTAGAATCCGCTCGTCTGTTTCAGTGGAACTATATTAGTTTCAGTTTTTAAAGACGATATTCTCAACTTTTACAACGTTTCAGAACATGAGATTCGTTTTTTTTGTTAGTTAAATTTCGATGATATTTCATAATTCAAACGAAAAAAAAACTAATTTTTTTGCATTTTT</canonical>
            <polymorphic>TTTTCTGACTATTTTTTTTCTGCTCTTTGAGTCGTGGTGGGAAATTAAAGGTAAGTACAATCGTTTTCAATTGTTTTGATATTTTGAAATTATACCAAAAATGATTATGTGTCGGTGGGACACTAATTTCCTGTTTCAATAAAAGTTTATTTTCAAGCATAATTGCAACGGGCCGAGCCACTAATAGGATTTTCACTGCGCGGTCCAACCCTAGGCTAGCCCGTCTTTTACATTTAAATATTTCCACTTAAAAAATGGTAAAATTTATTTAATTAAAAAAGAAAAAAAGATTTCTAGGGTTCGGCCCGGGTATATTATATTTTAATGGCACTCTTATCTTGGAAAATTTTTACATGACAGAATAATTGTTTCGATTTTTTTTTGGGTATTCTAAAAAAAGCCGACCGGTCCGTTGCAGGTATGGAAAAAAGTTAGATTGTTTAACAGATCTAAAAAAGTAGAATGAAATGGAAAAATGTATATAATTTTGTCTAAATTARAAAAAACAGTTTTTTTAATCAGTGAATATATTCAGAAAGAGTAATTTTTTCTTTTTTGACTATGATTCCAGTCGCTGGAAACTTTTGAAAATAGATAGTTAATAACTGCTTTAAATTTTTTGATTGTTTTCTTCATTATAAAAAATTCTCAAAATTCATTAAAATGTTTGGGTACTATATTGAAAATTCTGAATAGATGCTATATTGAAAATACTGAAAATTCTGAAACTTTGATTCATTGAAAAGGGAAATTAAACACGTTTCCAACTCAGATTTTGTTTAAAAACTCAGGATATGTCAAGAGTAGCCTAACTAAACATGTCCAAAAATTTTAGAATCCGCTCGTCTGTTTCAGTGGAACTATATTAGTTTCAGTTTTTAAAGACGATATTCTCAACTTTTACAACGTTTCAGAACATGAGATTCGTTTTTTTTGTTAGTTAAATTTCGATGATATTTCATAATTCAAACGAAAAAAAAACTAATTTTTTTGCATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTAATGGCACTCTTATCTTG</pcr_primer_p1>
		<pcr_primer_p2>CGACTGGAATCATAGTCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATTTTAATGGCACTCTTATCTTGGAAAATTTTTACATGACAGAATAATTGTTTCGATTTTTTTTTGGGTATTCTAAAAAAAGCCGACCGGTCCGTTGCAGGTATGGAAAAAAGTTAGATTGTTTAACAGATCTAAAAAAGTAGAATGAAATGGAAAAATGTATATAATTTTGTCTAAATTAGAAAAAACAGTTTTTTTAATCAGTGAATATATTCAGAAAGAGTAATTTTTTCTTTTTTGACTATGATTCCAGTCG</canonical_amplicon>
		<polymorphic_amplicon>ATTTTAATGGCACTCTTATCTTGGAAAATTTTTACATGACAGAATAATTGTTTCGATTTTTTTTTGGGTATTCTAAAAAAAGCCGACCGGTCCGTTGCAGGTATGGAAAAAAGTTAGATTGTTTAACAGATCTAAAAAAGTAGAATGAAATGGAAAAATGTATATAATTTTGTCTAAATTARAAAAAACAGTTTTTTTAATCAGTGAATATATTCAGAAAGAGTAATTTTTTCTTTTTTGACTATGATTCCAGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33113</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>23362</contig_pos>
        <strand></strand>
        <context>tttaataaaa[T/A]ttcawatttc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GCGGTTCCAGAACATTAAATTTGTTGTGTTATACTTAGAATTTAATAAAA</left_flank>
        <right_flank>TTCATATTTCAGGCATTTTCTGAAAAATTTTTTTTTTTAATTTCAGAATT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAATTTTTTATGAAGAGATTATATGAAGAATCAAAAAAGATTTCACGCAACATTTTTTATTTAGCTGGAAAAGTCTTGTCAAACGCAATCCACATAGTCAGAAGAAGCATGAGAATGACGTCACGTAGCCGACAGTTCTGCTTGTACAGCTCATTTGTGATATGCTTGGTTTTATTGCATAAGGCTTTCAGAAGTGTAATGTTTTCGACTGCTGAAAAAAGAGATTTTTAGATTTTATTGTATTTCCTCTAACAAGGGAACCACAACACCTCGTGAGTTTGGATTTTGTTGAAATTTCCACTATATGTAAAGGATACCTATCTAGACATCCCTGAAAATTGTAGAACACGCTCGCCATTTTCAGCCGAGTTATATCGGTTTCAGTACCAAAAATCGCATTTTCAGTGCAAAAACAGCGATTTTTAAAGGCGATTTTCTCCGCTCCCAGGCGGTTCCAGAACATTAAATTTGTTGTGTTATACTTAGAATTTAATAAAATTTCATATTTCAGGCATTTTCTGAAAAATTTTTTTTTTTAATTTCAGAATTTTGTCCACCATTTGTGTAGCTGATTTTATCGAACTTTTTTCAGTTTGGAAAATTTTTTTGAAAAAGTAGTGATAATCGTTTGCAAATATTATACAATCAATAGATAACCTATTTCTTGATTCTATACTTTTCATTATTTAACCATGGTCCGTATAGGTATGAAAACAGCGCTTCAAAACTACTTCATTGCAGTGATTGAGGACTTCAAAAGTTTTTTGACATTTGTTGAAAAAAAATTGTTTTTCTAACTATTGTCTCTTTTTCTAACTCTCTTCAATCGATAAAAATTTGATTCATATGTCAGAGGGATCCTAAAACGTCGCGAAATAGAAAAACAAAAGAAAAAAAAAAGAAAAAACCACGAATGGGTCCGAACCCACAGCCTTGTGCCTACTGGCGCACACCACATCCCCCACACTACGCCGTCGACATTTCCACTGATTCAAAAGG</canonical>
            <polymorphic>TCAATTTTTTATGAAGAGATTATATGAAGAATCAAAAAAGATTTCACGCAACATTTTTTATTTAGCTGGAAAAGTCTTGTCAAACGCAATCCACATAGTCAGAAGAAGCATGAGAATGACGTCACGTAGCCGACAGTTCTGCTTGTACAGCTCATTTGTGATATGCTTGGTTTTATTGCATAAGGCTTTCAGAAGTGTAATGTTTTCGACTGCTGAAAAAAGAGATTTTTAGATTTTATTGTATTTCCTCTAACAAGGGAACCACAACACCTCGTGAGTTTGGATTTTGTTGAAATTTCCACTATATGTAAAGGATACCTATCTAGACATCCCTGAAAATTGTAGAACACGCTCGCCATTTTCAGCCGAGTTATATCGGTTTCAGTACCAAAAATCGCATTTTCAGTGCAAAAACAGCGATTTTTAAAGGCGATTTTCTCCGCTCCCAGGCGGTTCCAGAACATTAAATTTGTTGTGTTATACTTAGAATTTAATAAAAWTTCATATTTCAGGCATTTTCTGAAAAATTTTTTTTTTTAATTTCAGAATTTTGTCCACCATTTGTGTAGCTGATTTTATCGAACTTTTTTCAGTTTGGAAAATTTTTTTGAAAAAGTAGTGATAATCGTTTGCAAATATTATACAATCAATAGATAACCTATTTCTTGATTCTATACTTTTCATTATTTAACCATGGTCCGTATAGGTATGAAAACAGCGCTTCAAAACTACTTCATTGCAGTGATTGAGGACTTCAAAAGTTTTTTGACATTTGTTGAAAAAAAATTGTTTTTCTAACTATTGTCTCTTTTTCTAACTCTCTTCAATCGATAAAAATTTGATTCATATGTCAGAGGGATCCTAAAACGTCGCGAAATAGAAAAACAAAAGAAAAAAAAAAGAAAAAACCACGAATGGGTCCGAACCCACAGCCTTGTGCCTACTGGCGCACACCACATCCCCCACACTACGCCGTCGACATTTCCACTGATTCAAAAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>293 235 173 165 54 28 21 21 10</canonical_bands>
                <polymorphic_bands>293 235 173 165 54 38 21 21</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>291 184 165 129 54 51 44 28 21 13 10 8 2</canonical_bands>
                <polymorphic_bands>291 184 165 129 54 51 44 38 21 13 8 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCCTGAAAATTGTAGAACAC</pcr_primer_p1>
		<pcr_primer_p2>AGTTTCAGCCGAGATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>798</pcr_amplicon_size>
		<canonical_amplicon>ATCCCTGAAAATTGTAGAACACGCTCGCCATTTTCAGCCGAGTTATATCGGTTTCAGTACCAAAAATCGCATTTTCAGTGCAAAAACAGCGATTTTTAAAGGCGATTTTCTCCGCTCCCAGGCGGTTCCAGAACATTAAATTTGTTGTGTTATACTTAGAATTTAATAAAATTTCATATTTCAGGCATTTT</canonical_amplicon>
		<polymorphic_amplicon>ATCCCTGAAAATTGTAGAACACGCTCGCCATTTTCAGCCGAGTTATATCGGTTTCAGTACCAAAAATCGCATTTTCAGTGCAAAAACAGCGATTTTTAAAGGCGATTTTCTCCGCTCCCAGGCGGTTCCAGAACATTAAATTTGTTGTGTTATACTTAGAATTTAATAAAAWTTCATATTTCAGGCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33114</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>23367</contig_pos>
        <strand></strand>
        <context>taaaawttca[T/A]atttcaggca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCCAGAACATTAAATTTGTTGTGTTATACTTAGAATTTAATAAAATTTCA</left_flank>
        <right_flank>ATTTCAGGCATTTTCTGAAAAATTTTTTTTTTTAATTTCAGAATTTTGTC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTATGAAGAGATTATATGAAGAATCAAAAAAGATTTCACGCAACATTTTTTATTTAGCTGGAAAAGTCTTGTCAAACGCAATCCACATAGTCAGAAGAAGCATGAGAATGACGTCACGTAGCCGACAGTTCTGCTTGTACAGCTCATTTGTGATATGCTTGGTTTTATTGCATAAGGCTTTCAGAAGTGTAATGTTTTCGACTGCTGAAAAAAGAGATTTTTAGATTTTATTGTATTTCCTCTAACAAGGGAACCACAACACCTCGTGAGTTTGGATTTTGTTGAAATTTCCACTATATGTAAAGGATACCTATCTAGACATCCCTGAAAATTGTAGAACACGCTCGCCATTTTCAGCCGAGTTATATCGGTTTCAGTACCAAAAATCGCATTTTCAGTGCAAAAACAGCGATTTTTAAAGGCGATTTTCTCCGCTCCCAGGCGGTTCCAGAACATTAAATTTGTTGTGTTATACTTAGAATTTAATAAAATTTCATATTTCAGGCATTTTCTGAAAAATTTTTTTTTTTAATTTCAGAATTTTGTCCACCATTTGTGTAGCTGATTTTATCGAACTTTTTTCAGTTTGGAAAATTTTTTTGAAAAAGTAGTGATAATCGTTTGCAAATATTATACAATCAATAGATAACCTATTTCTTGATTCTATACTTTTCATTATTTAACCATGGTCCGTATAGGTATGAAAACAGCGCTTCAAAACTACTTCATTGCAGTGATTGAGGACTTCAAAAGTTTTTTGACATTTGTTGAAAAAAAATTGTTTTTCTAACTATTGTCTCTTTTTCTAACTCTCTTCAATCGATAAAAATTTGATTCATATGTCAGAGGGATCCTAAAACGTCGCGAAATAGAAAAACAAAAGAAAAAAAAAAGAAAAAACCACGAATGGGTCCGAACCCACAGCCTTGTGCCTACTGGCGCACACCACATCCCCCACACTACGCCGTCGACATTTCCACTGATTCAAAAGGCGGTT</canonical>
            <polymorphic>TTTTTATGAAGAGATTATATGAAGAATCAAAAAAGATTTCACGCAACATTTTTTATTTAGCTGGAAAAGTCTTGTCAAACGCAATCCACATAGTCAGAAGAAGCATGAGAATGACGTCACGTAGCCGACAGTTCTGCTTGTACAGCTCATTTGTGATATGCTTGGTTTTATTGCATAAGGCTTTCAGAAGTGTAATGTTTTCGACTGCTGAAAAAAGAGATTTTTAGATTTTATTGTATTTCCTCTAACAAGGGAACCACAACACCTCGTGAGTTTGGATTTTGTTGAAATTTCCACTATATGTAAAGGATACCTATCTAGACATCCCTGAAAATTGTAGAACACGCTCGCCATTTTCAGCCGAGTTATATCGGTTTCAGTACCAAAAATCGCATTTTCAGTGCAAAAACAGCGATTTTTAAAGGCGATTTTCTCCGCTCCCAGGCGGTTCCAGAACATTAAATTTGTTGTGTTATACTTAGAATTTAATAAAATTTCAWATTTCAGGCATTTTCTGAAAAATTTTTTTTTTTAATTTCAGAATTTTGTCCACCATTTGTGTAGCTGATTTTATCGAACTTTTTTCAGTTTGGAAAATTTTTTTGAAAAAGTAGTGATAATCGTTTGCAAATATTATACAATCAATAGATAACCTATTTCTTGATTCTATACTTTTCATTATTTAACCATGGTCCGTATAGGTATGAAAACAGCGCTTCAAAACTACTTCATTGCAGTGATTGAGGACTTCAAAAGTTTTTTGACATTTGTTGAAAAAAAATTGTTTTTCTAACTATTGTCTCTTTTTCTAACTCTCTTCAATCGATAAAAATTTGATTCATATGTCAGAGGGATCCTAAAACGTCGCGAAATAGAAAAACAAAAGAAAAAAAAAAGAAAAAACCACGAATGGGTCCGAACCCACAGCCTTGTGCCTACTGGCGCACACCACATCCCCCACACTACGCCGTCGACATTTCCACTGATTCAAAAGGCGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCCTGAAAATTGTAGAACAC</pcr_primer_p1>
		<pcr_primer_p2>AGTTTCAGCCGAGATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>798</pcr_amplicon_size>
		<canonical_amplicon>ATCCCTGAAAATTGTAGAACACGCTCGCCATTTTCAGCCGAGTTATATCGGTTTCAGTACCAAAAATCGCATTTTCAGTGCAAAAACAGCGATTTTTAAAGGCGATTTTCTCCGCTCCCAGGCGGTTCCAGAACATTAAATTTGTTGTGTTATACTTAGAATTTAATAAAATTTCATATTTCAGGCATTTTCTGAA</canonical_amplicon>
		<polymorphic_amplicon>ATCCCTGAAAATTGTAGAACACGCTCGCCATTTTCAGCCGAGTTATATCGGTTTCAGTACCAAAAATCGCATTTTCAGTGCAAAAACAGCGATTTTTAAAGGCGATTTTCTCCGCTCCCAGGCGGTTCCAGAACATTAAATTTGTTGTGTTATACTTAGAATTTAATAAAATTTCAWATTTCAGGCATTTTCTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33115</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>23427</contig_pos>
        <strand></strand>
        <context>ccaccatttg[T/G]gtagctgatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATTTTCTGAAAAATTTTTTTTTTTAATTTCAGAATTTTGTCCACCATTTG</left_flank>
        <right_flank>GTAGCTGATTTTATCGAACTTTTTTCAGTTTGGAAAATTTTTTTGAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGGAAAAGTCTTGTCAAACGCAATCCACATAGTCAGAAGAAGCATGAGAATGACGTCACGTAGCCGACAGTTCTGCTTGTACAGCTCATTTGTGATATGCTTGGTTTTATTGCATAAGGCTTTCAGAAGTGTAATGTTTTCGACTGCTGAAAAAAGAGATTTTTAGATTTTATTGTATTTCCTCTAACAAGGGAACCACAACACCTCGTGAGTTTGGATTTTGTTGAAATTTCCACTATATGTAAAGGATACCTATCTAGACATCCCTGAAAATTGTAGAACACGCTCGCCATTTTCAGCCGAGTTATATCGGTTTCAGTACCAAAAATCGCATTTTCAGTGCAAAAACAGCGATTTTTAAAGGCGATTTTCTCCGCTCCCAGGCGGTTCCAGAACATTAAATTTGTTGTGTTATACTTAGAATTTAATAAAATTTCATATTTCAGGCATTTTCTGAAAAATTTTTTTTTTTAATTTCAGAATTTTGTCCACCATTTGTGTAGCTGATTTTATCGAACTTTTTTCAGTTTGGAAAATTTTTTTGAAAAAGTAGTGATAATCGTTTGCAAATATTATACAATCAATAGATAACCTATTTCTTGATTCTATACTTTTCATTATTTAACCATGGTCCGTATAGGTATGAAAACAGCGCTTCAAAACTACTTCATTGCAGTGATTGAGGACTTCAAAAGTTTTTTGACATTTGTTGAAAAAAAATTGTTTTTCTAACTATTGTCTCTTTTTCTAACTCTCTTCAATCGATAAAAATTTGATTCATATGTCAGAGGGATCCTAAAACGTCGCGAAATAGAAAAACAAAAGAAAAAAAAAAGAAAAAACCACGAATGGGTCCGAACCCACAGCCTTGTGCCTACTGGCGCACACCACATCCCCCACACTACGCCGTCGACATTTCCACTGATTCAAAAGGCGGTTACATTTTCGCCCCTCTCTAAGCTTCTCTCATAATGATTTCGATGATGGAATATGTGGTAA</canonical>
            <polymorphic>CTGGAAAAGTCTTGTCAAACGCAATCCACATAGTCAGAAGAAGCATGAGAATGACGTCACGTAGCCGACAGTTCTGCTTGTACAGCTCATTTGTGATATGCTTGGTTTTATTGCATAAGGCTTTCAGAAGTGTAATGTTTTCGACTGCTGAAAAAAGAGATTTTTAGATTTTATTGTATTTCCTCTAACAAGGGAACCACAACACCTCGTGAGTTTGGATTTTGTTGAAATTTCCACTATATGTAAAGGATACCTATCTAGACATCCCTGAAAATTGTAGAACACGCTCGCCATTTTCAGCCGAGTTATATCGGTTTCAGTACCAAAAATCGCATTTTCAGTGCAAAAACAGCGATTTTTAAAGGCGATTTTCTCCGCTCCCAGGCGGTTCCAGAACATTAAATTTGTTGTGTTATACTTAGAATTTAATAAAATTTCATATTTCAGGCATTTTCTGAAAAATTTTTTTTTTTAATTTCAGAATTTTGTCCACCATTTGKGTAGCTGATTTTATCGAACTTTTTTCAGTTTGGAAAATTTTTTTGAAAAAGTAGTGATAATCGTTTGCAAATATTATACAATCAATAGATAACCTATTTCTTGATTCTATACTTTTCATTATTTAACCATGGTCCGTATAGGTATGAAAACAGCGCTTCAAAACTACTTCATTGCAGTGATTGAGGACTTCAAAAGTTTTTTGACATTTGTTGAAAAAAAATTGTTTTTCTAACTATTGTCTCTTTTTCTAACTCTCTTCAATCGATAAAAATTTGATTCATATGTCAGAGGGATCCTAAAACGTCGCGAAATAGAAAAACAAAAGAAAAAAAAAAGAAAAAACCACGAATGGGTCCGAACCCACAGCCTTGTGCCTACTGGCGCACACCACATCCCCCACACTACGCCGTCGACATTTCCACTGATTCAAAAGGCGGTTACATTTTCGCCCCTCTCTAAGCTTCTCTCATAATGATTTCGATGATGGAATATGTGGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>167 123 80 74 69 67 59 55 48 37 36 31 28 25 20 18 12 10 9 9 7 5 4 3 2 2</canonical_bands>
                <polymorphic_bands>167 123 80 74 69 67 64 59 48 37 36 31 28 25 20 18 12 10 9 7 5 4 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCCTGAAAATTGTAGAACAC</pcr_primer_p1>
		<pcr_primer_p2>AGTTTCAGCCGAGATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>798</pcr_amplicon_size>
		<canonical_amplicon>ATCCCTGAAAATTGTAGAACACGCTCGCCATTTTCAGCCGAGTTATATCGGTTTCAGTACCAAAAATCGCATTTTCAGTGCAAAAACAGCGATTTTTAAAGGCGATTTTCTCCGCTCCCAGGCGGTTCCAGAACATTAAATTTGTTGTGTTATACTTAGAATTTAATAAAATTTCATATTTCAGGCATTTTCTGAAAAATTTTTTTTTTTAATTTCAGAATTTTGTCCACCATTTGTGTAGCTGATTTTATCGAAC</canonical_amplicon>
		<polymorphic_amplicon>ATCCCTGAAAATTGTAGAACACGCTCGCCATTTTCAGCCGAGTTATATCGGTTTCAGTACCAAAAATCGCATTTTCAGTGCAAAAACAGCGATTTTTAAAGGCGATTTTCTCCGCTCCCAGGCGGTTCCAGAACATTAAATTTGTTGTGTTATACTTAGAATTTAATAAAATTTCATATTTCAGGCATTTTCTGAAAAATTTTTTTTTTTAATTTCAGAATTTTGTCCACCATTTGKGTAGCTGATTTTATCGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33116</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>23623</contig_pos>
        <strand></strand>
        <context>gacttcaaaa[G/T]ttttttgaca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAAACAGCGCTTCAAAACTACTTCATTGCAGTGATTGAGGACTTCAAAA</left_flank>
        <right_flank>TTTTTTGACATTTGTTGAAAAAAAATTGTTTTTCTAACTATTGTCTCTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACAACACCTCGTGAGTTTGGATTTTGTTGAAATTTCCACTATATGTAAAGGATACCTATCTAGACATCCCTGAAAATTGTAGAACACGCTCGCCATTTTCAGCCGAGTTATATCGGTTTCAGTACCAAAAATCGCATTTTCAGTGCAAAAACAGCGATTTTTAAAGGCGATTTTCTCCGCTCCCAGGCGGTTCCAGAACATTAAATTTGTTGTGTTATACTTAGAATTTAATAAAATTTCATATTTCAGGCATTTTCTGAAAAATTTTTTTTTTTAATTTCAGAATTTTGTCCACCATTTGTGTAGCTGATTTTATCGAACTTTTTTCAGTTTGGAAAATTTTTTTGAAAAAGTAGTGATAATCGTTTGCAAATATTATACAATCAATAGATAACCTATTTCTTGATTCTATACTTTTCATTATTTAACCATGGTCCGTATAGGTATGAAAACAGCGCTTCAAAACTACTTCATTGCAGTGATTGAGGACTTCAAAAGTTTTTTGACATTTGTTGAAAAAAAATTGTTTTTCTAACTATTGTCTCTTTTTCTAACTCTCTTCAATCGATAAAAATTTGATTCATATGTCAGAGGGATCCTAAAACGTCGCGAAATAGAAAAACAAAAGAAAAAAAAAAGAAAAAACCACGAATGGGTCCGAACCCACAGCCTTGTGCCTACTGGCGCACACCACATCCCCCACACTACGCCGTCGACATTTCCACTGATTCAAAAGGCGGTTACATTTTCGCCCCTCTCTAAGCTTCTCTCATAATGATTTCGATGATGGAATATGTGGTAAAGCATGCAAGTCAACGGGTTTCAGTACTAAAACTTCGGACTGAAAAATCTCGGCTGAAACTGGTGAACATGTTCTAAAAATTTCAAGGATGTCTAGATAGGCTATCCTTGACATATCCTGAAAAATTCATCAAAATCCAAACTGTTGTGGTTCCCTTGTAATAGGAGTTCACCCAAACGCCAACTTTGAGTTCAGT</canonical>
            <polymorphic>CCACAACACCTCGTGAGTTTGGATTTTGTTGAAATTTCCACTATATGTAAAGGATACCTATCTAGACATCCCTGAAAATTGTAGAACACGCTCGCCATTTTCAGCCGAGTTATATCGGTTTCAGTACCAAAAATCGCATTTTCAGTGCAAAAACAGCGATTTTTAAAGGCGATTTTCTCCGCTCCCAGGCGGTTCCAGAACATTAAATTTGTTGTGTTATACTTAGAATTTAATAAAATTTCATATTTCAGGCATTTTCTGAAAAATTTTTTTTTTTAATTTCAGAATTTTGTCCACCATTTGTGTAGCTGATTTTATCGAACTTTTTTCAGTTTGGAAAATTTTTTTGAAAAAGTAGTGATAATCGTTTGCAAATATTATACAATCAATAGATAACCTATTTCTTGATTCTATACTTTTCATTATTTAACCATGGTCCGTATAGGTATGAAAACAGCGCTTCAAAACTACTTCATTGCAGTGATTGAGGACTTCAAAAKTTTTTTGACATTTGTTGAAAAAAAATTGTTTTTCTAACTATTGTCTCTTTTTCTAACTCTCTTCAATCGATAAAAATTTGATTCATATGTCAGAGGGATCCTAAAACGTCGCGAAATAGAAAAACAAAAGAAAAAAAAAAGAAAAAACCACGAATGGGTCCGAACCCACAGCCTTGTGCCTACTGGCGCACACCACATCCCCCACACTACGCCGTCGACATTTCCACTGATTCAAAAGGCGGTTACATTTTCGCCCCTCTCTAAGCTTCTCTCATAATGATTTCGATGATGGAATATGTGGTAAAGCATGCAAGTCAACGGGTTTCAGTACTAAAACTTCGGACTGAAAAATCTCGGCTGAAACTGGTGAACATGTTCTAAAAATTTCAAGGATGTCTAGATAGGCTATCCTTGACATATCCTGAAAAATTCATCAAAATCCAAACTGTTGTGGTTCCCTTGTAATAGGAGTTCACCCAAACGCCAACTTTGAGTTCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCCTGAAAATTGTAGAACAC</pcr_primer_p1>
		<pcr_primer_p2>AGTTTCAGCCGAGATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>798</pcr_amplicon_size>
		<canonical_amplicon>ATCCCTGAAAATTGTAGAACACGCTCGCCATTTTCAGCCGAGTTATATCGGTTTCAGTACCAAAAATCGCATTTTCAGTGCAAAAACAGCGATTTTTAAAGGCGATTTTCTCCGCTCCCAGGCGGTTCCAGAACATTAAATTTGTTGTGTTATACTTAGAATTTAATAAAATTTCATATTTCAGGCATTTTCTGAAAAATTTTTTTTTTTAATTTCAGAATTTTGTCCACCATTTGTGTAGCTGATTTTATCGAACTTTTTTCAGTTTGGAAAATTTTTTTGAAAAAGTAGTGATAATCGTTTGCAAATATTATACAATCAATAGATAACCTATTTCTTGATTCTATACTTTTCATTATTTAACCATGGTCCGTATAGGTATGAAAACAGCGCTTCAAAACTACTTCATTGCAGTGATTGAGGACTTCAAAAGTTTTTTGACATTTGTTGAAAAAAAATTGTTTTTCTAACTATTGTCTCTTTTTCTAACTCTCTTCAATCGATAAAAATTTGATTCATATGTCAGAGGGATCCTAAAACGTCGCGAAATAGAAAAACAAAAGAAAAAAAAAAGAAAAAACCACGAATGGGTCCGAACCCACAGCCTTGTGCCTACTGGCGCACACCACATCCCCCACACTACGCCGTCGACATTTCCACTGATTCAAAAGGCGGTTACATTTTCGCCCCTCTCTAAGCTTCTCTCATAATGATTTCGATGATGGAATATGTGGTAAAGCATGCAAGTCAACGGGTTTCAGTACTAAAACTTCGGACTGAAAAATCTCGGCTGAAACT</canonical_amplicon>
		<polymorphic_amplicon>ATCCCTGAAAATTGTAGAACACGCTCGCCATTTTCAGCCGAGTTATATCGGTTTCAGTACCAAAAATCGCATTTTCAGTGCAAAAACAGCGATTTTTAAAGGCGATTTTCTCCGCTCCCAGGCGGTTCCAGAACATTAAATTTGTTGTGTTATACTTAGAATTTAATAAAATTTCATATTTCAGGCATTTTCTGAAAAATTTTTTTTTTTAATTTCAGAATTTTGTCCACCATTTGTGTAGCTGATTTTATCGAACTTTTTTCAGTTTGGAAAATTTTTTTGAAAAAGTAGTGATAATCGTTTGCAAATATTATACAATCAATAGATAACCTATTTCTTGATTCTATACTTTTCATTATTTAACCATGGTCCGTATAGGTATGAAAACAGCGCTTCAAAACTACTTCATTGCAGTGATTGAGGACTTCAAAAKTTTTTTGACATTTGTTGAAAAAAAATTGTTTTTCTAACTATTGTCTCTTTTTCTAACTCTCTTCAATCGATAAAAATTTGATTCATATGTCAGAGGGATCCTAAAACGTCGCGAAATAGAAAAACAAAAGAAAAAAAAAAGAAAAAACCACGAATGGGTCCGAACCCACAGCCTTGTGCCTACTGGCGCACACCACATCCCCCACACTACGCCGTCGACATTTCCACTGATTCAAAAGGCGGTTACATTTTCGCCCCTCTCTAAGCTTCTCTCATAATGATTTCGATGATGGAATATGTGGTAAAGCATGCAAGTCAACGGGTTTCAGTACTAAAACTTCGGACTGAAAAATCTCGGCTGAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33117</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>25606</contig_pos>
        <strand>+</strand>
        <context>GAATCTACAA[A/C]TTMAAGGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAGCACATCAAACATCTGGAATAAGTTTTCGATTGGCTCGAATCTACAA</left_flank>
        <right_flank>TTAAAGGTTTCTGTTCAAGATGAACCCAACCGGAACCATTTTCAGCTTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAATGTGCATTTAAAGCTAGCACTAGTAGCAGACAATTTTTTTAGTAGTAGACACATTTTTGATATCTCTTTCGCGAGTCGAGATAGTTGAAATCAAAATGCGGGGGTGACATTCGATAACGGTATAAAGTATTATATTGTAGGTCTAACAAGGCAGTTCGTTATTTCGGGATTCACTCAGAAGTACTTGAGTTTTCTTTAACAGATAAAAACTCCTTGAAATGCAAAAAAATAATGCTCAAAAAGAATCCGGAAATCCCATGTTTTGCATTACTGAGAAATGGTGCCAAAGGAATGTAGGTGTGAACTCCAAAAAAAAACGGAGTAGACTTTATAATGAATTTTATGTGTCTAAAGGGGTACCTGGAAGTACCATGTCGACCATTGAATCAGGGATATTAAAAAGTCGCAGATTGCATTTTCTGTCGGAGAAAGTAGAGCAAGCTCTAGAGCACATCAAACATCTGGAATAAGTTTTCGATTGGCTCGAATCTACAAATTAAAGGTTTCTGTTCAAGATGAACCCAACCGGAACCATTTTCAGCTTTCCTCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTGATTCTGAAGATCGATGATAGAAAAAAACAAAGGTTGCAAGAAAAATCAGGTCATTAGTAGGATTATCAAATTCAAATAGGACCAAGAGAATCAGAAAATGCGGGCGAAGAATTGAGTTTCACTCTGGTTGGTAAAAAACGGGAAGTTCTGAAAACCACAAGGGTTATTGATACAGATGTTCGATGATAAGAAAAAGCTGTAGGTTACAATACAAAGAGGATTTTTAGAAGGATCATTCATAATCAATTATGGAAAGTAGAATCGAAAGATGGGGGCGAAAAAATGAATTTCACTTTGGTCGGACAAACAAACGGGGGGTTCTAAAAATCACACGGATTA</canonical>
            <polymorphic>CAAATGTGCATTTAAAGCTAGCACTAGTAGCAGACAATTTTTTTAGTAGTAGACACATTTTTGATATCTCTTTCGCGAGTCGAGATAGTTGAAATCAAAATGCGGGGGTGACATTCGATAACGGTATAAAGTATTATATTGTAGGTCTAACAAGGCAGTTCGTTATTTCGGGATTCACTCAGAAGTACTTGAGTTTTCTTTAACAGATAAAAACTCCTTGAAATGCAAAAAAATAATGCTCAAAAAGAATCCGGAAATCCCATGTTTTGCATTACTGAGAAATGGTGCCAAAGGAATGTAGGTGTGAACTCCAAAAAAAAACGGAGTAGACTTTATAATGAATTTTATGTGTCTAAAGGGGTACCTGGAAGTACCATGTCGACCATTGAATCAGGGATATTAAAAAGTCGCAGATTGCATTTTCTGTCGGAGAAAGTAGAGCAAGCTCTAGAGCACATCAAACATCTGGAATAAGTTTTCGATTGGCTCGAATCTACAAMTTAAAGGTTTCTGTTCAAGATGAACCCAACCGGAACCATTTTCAGCTTTCCTCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTGATTCTGAAGATCGATGATAGAAAAAAACAAAGGTTGCAAGAAAAATCAGGTCATTAGTAGGATTATCAAATTCAAATAGGACCAAGAGAATCAGAAAATGCGGGCGAAGAATTGAGTTTCACTCTGGTTGGTAAAAAACGGGAAGTTCTGAAAACCACAAGGGTTATTGATACAGATGTTCGATGATAAGAAAAAGCTGTAGGTTACAATACAAAGAGGATTTTTAGAAGGATCATTCATAATCAATTATGGAAAGTAGAATCGAAAGATGGGGGCGAAAAAATGAATTTCACTTTGGTCGGACAAACAAACGGGGGGTTCTAAAAATCACACGGATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>305 158 135 129 102 54 41 41 35</canonical_bands>
                <polymorphic_bands>305 260 135 129 54 41 41 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCTGTCGGAGAAAGTAGAG</pcr_primer_p1>
		<pcr_primer_p2>CAATAATCCGTGTGATTTTTAGA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCTGTCGGAGAAAGTAGAGCAAGCTCTAGAGCACATCAAACATCTGGAATAAGTTTTCGATTGGCTCGAATCTACAAATTAAAGGTTTCTGTTCAAGATGAACCCAACCGGAACCATTTTCAGCTTTCCTCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTG</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCTGTCGGAGAAAGTAGAGCAAGCTCTAGAGCACATCAAACATCTGGAATAAGTTTTCGATTGGCTCGAATCTACAAMTTAAAGGTTTCTGTTCAAGATGAACCCAACCGGAACCATTTTCAGCTTTCCTCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33118</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>25609</contig_pos>
        <strand>+</strand>
        <context>TCTACAAMTT[A/C]AAGGTTTCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCACATCAAACATCTGGAATAAGTTTTCGATTGGCTCGAATCTACAAATT</left_flank>
        <right_flank>AAGGTTTCTGTTCAAGATGAACCCAACCGGAACCATTTTCAGCTTTCCTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTGCATTTAAAGCTAGCACTAGTAGCAGACAATTTTTTTAGTAGTAGACACATTTTTGATATCTCTTTCGCGAGTCGAGATAGTTGAAATCAAAATGCGGGGGTGACATTCGATAACGGTATAAAGTATTATATTGTAGGTCTAACAAGGCAGTTCGTTATTTCGGGATTCACTCAGAAGTACTTGAGTTTTCTTTAACAGATAAAAACTCCTTGAAATGCAAAAAAATAATGCTCAAAAAGAATCCGGAAATCCCATGTTTTGCATTACTGAGAAATGGTGCCAAAGGAATGTAGGTGTGAACTCCAAAAAAAAACGGAGTAGACTTTATAATGAATTTTATGTGTCTAAAGGGGTACCTGGAAGTACCATGTCGACCATTGAATCAGGGATATTAAAAAGTCGCAGATTGCATTTTCTGTCGGAGAAAGTAGAGCAAGCTCTAGAGCACATCAAACATCTGGAATAAGTTTTCGATTGGCTCGAATCTACAAATTAAAGGTTTCTGTTCAAGATGAACCCAACCGGAACCATTTTCAGCTTTCCTCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTGATTCTGAAGATCGATGATAGAAAAAAACAAAGGTTGCAAGAAAAATCAGGTCATTAGTAGGATTATCAAATTCAAATAGGACCAAGAGAATCAGAAAATGCGGGCGAAGAATTGAGTTTCACTCTGGTTGGTAAAAAACGGGAAGTTCTGAAAACCACAAGGGTTATTGATACAGATGTTCGATGATAAGAAAAAGCTGTAGGTTACAATACAAAGAGGATTTTTAGAAGGATCATTCATAATCAATTATGGAAAGTAGAATCGAAAGATGGGGGCGAAAAAATGAATTTCACTTTGGTCGGACAAACAAACGGGGGGTTCTAAAAATCACACGGATTATTG</canonical>
            <polymorphic>ATGTGCATTTAAAGCTAGCACTAGTAGCAGACAATTTTTTTAGTAGTAGACACATTTTTGATATCTCTTTCGCGAGTCGAGATAGTTGAAATCAAAATGCGGGGGTGACATTCGATAACGGTATAAAGTATTATATTGTAGGTCTAACAAGGCAGTTCGTTATTTCGGGATTCACTCAGAAGTACTTGAGTTTTCTTTAACAGATAAAAACTCCTTGAAATGCAAAAAAATAATGCTCAAAAAGAATCCGGAAATCCCATGTTTTGCATTACTGAGAAATGGTGCCAAAGGAATGTAGGTGTGAACTCCAAAAAAAAACGGAGTAGACTTTATAATGAATTTTATGTGTCTAAAGGGGTACCTGGAAGTACCATGTCGACCATTGAATCAGGGATATTAAAAAGTCGCAGATTGCATTTTCTGTCGGAGAAAGTAGAGCAAGCTCTAGAGCACATCAAACATCTGGAATAAGTTTTCGATTGGCTCGAATCTACAAATTMAAGGTTTCTGTTCAAGATGAACCCAACCGGAACCATTTTCAGCTTTCCTCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTGATTCTGAAGATCGATGATAGAAAAAAACAAAGGTTGCAAGAAAAATCAGGTCATTAGTAGGATTATCAAATTCAAATAGGACCAAGAGAATCAGAAAATGCGGGCGAAGAATTGAGTTTCACTCTGGTTGGTAAAAAACGGGAAGTTCTGAAAACCACAAGGGTTATTGATACAGATGTTCGATGATAAGAAAAAGCTGTAGGTTACAATACAAAGAGGATTTTTAGAAGGATCATTCATAATCAATTATGGAAAGTAGAATCGAAAGATGGGGGCGAAAAAATGAATTTCACTTTGGTCGGACAAACAAACGGGGGGTTCTAAAAATCACACGGATTATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>421 200 188 101 81 9</canonical_bands>
                <polymorphic_bands>421 200 188 182 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCTGTCGGAGAAAGTAGAG</pcr_primer_p1>
		<pcr_primer_p2>CAATAATCCGTGTGATTTTTAGA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCTGTCGGAGAAAGTAGAGCAAGCTCTAGAGCACATCAAACATCTGGAATAAGTTTTCGATTGGCTCGAATCTACAAATTAAAGGTTTCTGTTCAAGATGAACCCAACCGGAACCATTTTCAGCTTTCCTCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTG</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCTGTCGGAGAAAGTAGAGCAAGCTCTAGAGCACATCAAACATCTGGAATAAGTTTTCGATTGGCTCGAATCTACAAATTMAAGGTTTCTGTTCAAGATGAACCCAACCGGAACCATTTTCAGCTTTCCTCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33119</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>25702</contig_pos>
        <strand>+</strand>
        <context>TATAACGGTT[C/T]ATTGAATTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTCCTCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTT</left_flank>
        <right_flank>ATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGAAGGGGTTCTAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATGCGGGGGTGACATTCGATAACGGTATAAAGTATTATATTGTAGGTCTAACAAGGCAGTTCGTTATTTCGGGATTCACTCAGAAGTACTTGAGTTTTCTTTAACAGATAAAAACTCCTTGAAATGCAAAAAAATAATGCTCAAAAAGAATCCGGAAATCCCATGTTTTGCATTACTGAGAAATGGTGCCAAAGGAATGTAGGTGTGAACTCCAAAAAAAAACGGAGTAGACTTTATAATGAATTTTATGTGTCTAAAGGGGTACCTGGAAGTACCATGTCGACCATTGAATCAGGGATATTAAAAAGTCGCAGATTGCATTTTCTGTCGGAGAAAGTAGAGCAAGCTCTAGAGCACATCAAACATCTGGAATAAGTTTTCGATTGGCTCGAATCTACAAATTAAAGGTTTCTGTTCAAGATGAACCCAACCGGAACCATTTTCAGCTTTCCTCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTGATTCTGAAGATCGATGATAGAAAAAAACAAAGGTTGCAAGAAAAATCAGGTCATTAGTAGGATTATCAAATTCAAATAGGACCAAGAGAATCAGAAAATGCGGGCGAAGAATTGAGTTTCACTCTGGTTGGTAAAAAACGGGAAGTTCTGAAAACCACAAGGGTTATTGATACAGATGTTCGATGATAAGAAAAAGCTGTAGGTTACAATACAAAGAGGATTTTTAGAAGGATCATTCATAATCAATTATGGAAAGTAGAATCGAAAGATGGGGGCGAAAAAATGAATTTCACTTTGGTCGGACAAACAAACGGGGGGTTCTAAAAATCACACGGATTATTGATACAGAAGATCGATGATTAAAAAACGGAAGGTTACAGGAAAAAGCAGCTTAATAGAAACATATTTCAATGCAATTCTGATCAAGAGACTTGG</canonical>
            <polymorphic>AAAATGCGGGGGTGACATTCGATAACGGTATAAAGTATTATATTGTAGGTCTAACAAGGCAGTTCGTTATTTCGGGATTCACTCAGAAGTACTTGAGTTTTCTTTAACAGATAAAAACTCCTTGAAATGCAAAAAAATAATGCTCAAAAAGAATCCGGAAATCCCATGTTTTGCATTACTGAGAAATGGTGCCAAAGGAATGTAGGTGTGAACTCCAAAAAAAAACGGAGTAGACTTTATAATGAATTTTATGTGTCTAAAGGGGTACCTGGAAGTACCATGTCGACCATTGAATCAGGGATATTAAAAAGTCGCAGATTGCATTTTCTGTCGGAGAAAGTAGAGCAAGCTCTAGAGCACATCAAACATCTGGAATAAGTTTTCGATTGGCTCGAATCTACAAATTAAAGGTTTCTGTTCAAGATGAACCCAACCGGAACCATTTTCAGCTTTCCTCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTYATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTGATTCTGAAGATCGATGATAGAAAAAAACAAAGGTTGCAAGAAAAATCAGGTCATTAGTAGGATTATCAAATTCAAATAGGACCAAGAGAATCAGAAAATGCGGGCGAAGAATTGAGTTTCACTCTGGTTGGTAAAAAACGGGAAGTTCTGAAAACCACAAGGGTTATTGATACAGATGTTCGATGATAAGAAAAAGCTGTAGGTTACAATACAAAGAGGATTTTTAGAAGGATCATTCATAATCAATTATGGAAAGTAGAATCGAAAGATGGGGGCGAAAAAATGAATTTCACTTTGGTCGGACAAACAAACGGGGGGTTCTAAAAATCACACGGATTATTGATACAGAAGATCGATGATTAAAAAACGGAAGGTTACAGGAAAAAGCAGCTTAATAGAAACATATTTCAATGCAATTCTGATCAAGAGACTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCTGTCGGAGAAAGTAGAG</pcr_primer_p1>
		<pcr_primer_p2>CAATAATCCGTGTGATTTTTAGA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCTGTCGGAGAAAGTAGAGCAAGCTCTAGAGCACATCAAACATCTGGAATAAGTTTTCGATTGGCTCGAATCTACAAATTAAAGGTTTCTGTTCAAGATGAACCCAACCGGAACCATTTTCAGCTTTCCTCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTG</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCTGTCGGAGAAAGTAGAGCAAGCTCTAGAGCACATCAAACATCTGGAATAAGTTTTCGATTGGCTCGAATCTACAAATTAAAGGTTTCTGTTCAAGATGAACCCAACCGGAACCATTTTCAGCTTTCCTCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTYATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33120</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>25724</contig_pos>
        <strand>+</strand>
        <context>TTTTGGTCGG[C/T]CAAACAAACG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGG</left_flank>
        <right_flank>CAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTGATTCTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACGGTATAAAGTATTATATTGTAGGTCTAACAAGGCAGTTCGTTATTTCGGGATTCACTCAGAAGTACTTGAGTTTTCTTTAACAGATAAAAACTCCTTGAAATGCAAAAAAATAATGCTCAAAAAGAATCCGGAAATCCCATGTTTTGCATTACTGAGAAATGGTGCCAAAGGAATGTAGGTGTGAACTCCAAAAAAAAACGGAGTAGACTTTATAATGAATTTTATGTGTCTAAAGGGGTACCTGGAAGTACCATGTCGACCATTGAATCAGGGATATTAAAAAGTCGCAGATTGCATTTTCTGTCGGAGAAAGTAGAGCAAGCTCTAGAGCACATCAAACATCTGGAATAAGTTTTCGATTGGCTCGAATCTACAAATTAAAGGTTTCTGTTCAAGATGAACCCAACCGGAACCATTTTCAGCTTTCCTCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTGATTCTGAAGATCGATGATAGAAAAAAACAAAGGTTGCAAGAAAAATCAGGTCATTAGTAGGATTATCAAATTCAAATAGGACCAAGAGAATCAGAAAATGCGGGCGAAGAATTGAGTTTCACTCTGGTTGGTAAAAAACGGGAAGTTCTGAAAACCACAAGGGTTATTGATACAGATGTTCGATGATAAGAAAAAGCTGTAGGTTACAATACAAAGAGGATTTTTAGAAGGATCATTCATAATCAATTATGGAAAGTAGAATCGAAAGATGGGGGCGAAAAAATGAATTTCACTTTGGTCGGACAAACAAACGGGGGGTTCTAAAAATCACACGGATTATTGATACAGAAGATCGATGATTAAAAAACGGAAGGTTACAGGAAAAAGCAGCTTAATAGAAACATATTTCAATGCAATTCTGATCAAGAGACTTGGAAAATGGAAGAAGTCGGTAAAA</canonical>
            <polymorphic>TAACGGTATAAAGTATTATATTGTAGGTCTAACAAGGCAGTTCGTTATTTCGGGATTCACTCAGAAGTACTTGAGTTTTCTTTAACAGATAAAAACTCCTTGAAATGCAAAAAAATAATGCTCAAAAAGAATCCGGAAATCCCATGTTTTGCATTACTGAGAAATGGTGCCAAAGGAATGTAGGTGTGAACTCCAAAAAAAAACGGAGTAGACTTTATAATGAATTTTATGTGTCTAAAGGGGTACCTGGAAGTACCATGTCGACCATTGAATCAGGGATATTAAAAAGTCGCAGATTGCATTTTCTGTCGGAGAAAGTAGAGCAAGCTCTAGAGCACATCAAACATCTGGAATAAGTTTTCGATTGGCTCGAATCTACAAATTAAAGGTTTCTGTTCAAGATGAACCCAACCGGAACCATTTTCAGCTTTCCTCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGYCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTGATTCTGAAGATCGATGATAGAAAAAAACAAAGGTTGCAAGAAAAATCAGGTCATTAGTAGGATTATCAAATTCAAATAGGACCAAGAGAATCAGAAAATGCGGGCGAAGAATTGAGTTTCACTCTGGTTGGTAAAAAACGGGAAGTTCTGAAAACCACAAGGGTTATTGATACAGATGTTCGATGATAAGAAAAAGCTGTAGGTTACAATACAAAGAGGATTTTTAGAAGGATCATTCATAATCAATTATGGAAAGTAGAATCGAAAGATGGGGGCGAAAAAATGAATTTCACTTTGGTCGGACAAACAAACGGGGGGTTCTAAAAATCACACGGATTATTGATACAGAAGATCGATGATTAAAAAACGGAAGGTTACAGGAAAAAGCAGCTTAATAGAAACATATTTCAATGCAATTCTGATCAAGAGACTTGGAAAATGGAAGAAGTCGGTAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>327 240 194 72 67 59 41</canonical_bands>
                <polymorphic_bands>327 312 194 67 59 41</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTCGAATCTGAAACTCAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTACCAACCAGAGTGAAACT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTGATTCTGAAGATCGATGATAGAAAAAAACAAAGGTTGCAAGAAAAATCAGGTCATTAGTAGGATTATCAAATTCAAATAGGACCAAGAGAATCAGAAAATGCGGGCGAAGAATTGAGTTTCACTCTGGTTGGTAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGYCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTGATTCTGAAGATCGATGATAGAAAAAAACAAAGGTTGCAAGAAAAATCAGGTCATTAGTAGGATTATCAAATTCAAATAGGACCAAGAGAATCAGAAAATGCGGGCGAAGAATTGAGTTTCACTCTGGTTGGTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33121</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>25738</contig_pos>
        <strand>+</strand>
        <context>ACAAACGGGG[A/G]RGGGGTTCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGG</left_flank>
        <right_flank>AGGGGTTCTAAAAATCACACGGATTATTGATTCTGAAGATCGATGATAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTATATTGTAGGTCTAACAAGGCAGTTCGTTATTTCGGGATTCACTCAGAAGTACTTGAGTTTTCTTTAACAGATAAAAACTCCTTGAAATGCAAAAAAATAATGCTCAAAAAGAATCCGGAAATCCCATGTTTTGCATTACTGAGAAATGGTGCCAAAGGAATGTAGGTGTGAACTCCAAAAAAAAACGGAGTAGACTTTATAATGAATTTTATGTGTCTAAAGGGGTACCTGGAAGTACCATGTCGACCATTGAATCAGGGATATTAAAAAGTCGCAGATTGCATTTTCTGTCGGAGAAAGTAGAGCAAGCTCTAGAGCACATCAAACATCTGGAATAAGTTTTCGATTGGCTCGAATCTACAAATTAAAGGTTTCTGTTCAAGATGAACCCAACCGGAACCATTTTCAGCTTTCCTCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTGATTCTGAAGATCGATGATAGAAAAAAACAAAGGTTGCAAGAAAAATCAGGTCATTAGTAGGATTATCAAATTCAAATAGGACCAAGAGAATCAGAAAATGCGGGCGAAGAATTGAGTTTCACTCTGGTTGGTAAAAAACGGGAAGTTCTGAAAACCACAAGGGTTATTGATACAGATGTTCGATGATAAGAAAAAGCTGTAGGTTACAATACAAAGAGGATTTTTAGAAGGATCATTCATAATCAATTATGGAAAGTAGAATCGAAAGATGGGGGCGAAAAAATGAATTTCACTTTGGTCGGACAAACAAACGGGGGGTTCTAAAAATCACACGGATTATTGATACAGAAGATCGATGATTAAAAAACGGAAGGTTACAGGAAAAAGCAGCTTAATAGAAACATATTTCAATGCAATTCTGATCAAGAGACTTGGAAAATGGAAGAAGTCGGTAAAACAAACAGGGAGTTC</canonical>
            <polymorphic>ATTATATTGTAGGTCTAACAAGGCAGTTCGTTATTTCGGGATTCACTCAGAAGTACTTGAGTTTTCTTTAACAGATAAAAACTCCTTGAAATGCAAAAAAATAATGCTCAAAAAGAATCCGGAAATCCCATGTTTTGCATTACTGAGAAATGGTGCCAAAGGAATGTAGGTGTGAACTCCAAAAAAAAACGGAGTAGACTTTATAATGAATTTTATGTGTCTAAAGGGGTACCTGGAAGTACCATGTCGACCATTGAATCAGGGATATTAAAAAGTCGCAGATTGCATTTTCTGTCGGAGAAAGTAGAGCAAGCTCTAGAGCACATCAAACATCTGGAATAAGTTTTCGATTGGCTCGAATCTACAAATTAAAGGTTTCTGTTCAAGATGAACCCAACCGGAACCATTTTCAGCTTTCCTCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGRAGGGGTTCTAAAAATCACACGGATTATTGATTCTGAAGATCGATGATAGAAAAAAACAAAGGTTGCAAGAAAAATCAGGTCATTAGTAGGATTATCAAATTCAAATAGGACCAAGAGAATCAGAAAATGCGGGCGAAGAATTGAGTTTCACTCTGGTTGGTAAAAAACGGGAAGTTCTGAAAACCACAAGGGTTATTGATACAGATGTTCGATGATAAGAAAAAGCTGTAGGTTACAATACAAAGAGGATTTTTAGAAGGATCATTCATAATCAATTATGGAAAGTAGAATCGAAAGATGGGGGCGAAAAAATGAATTTCACTTTGGTCGGACAAACAAACGGGGGGTTCTAAAAATCACACGGATTATTGATACAGAAGATCGATGATTAAAAAACGGAAGGTTACAGGAAAAAGCAGCTTAATAGAAACATATTTCAATGCAATTCTGATCAAGAGACTTGGAAAATGGAAGAAGTCGGTAAAACAAACAGGGAGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTCGAATCTGAAACTCAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTACCAACCAGAGTGAAACT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTGATTCTGAAGATCGATGATAGAAAAAAACAAAGGTTGCAAGAAAAATCAGGTCATTAGTAGGATTATCAAATTCAAATAGGACCAAGAGAATCAGAAAATGCGGGCGAAGAATTGAGTTTCACTCTGGTTGGTAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGRAGGGGTTCTAAAAATCACACGGATTATTGATTCTGAAGATCGATGATAGAAAAAAACAAAGGTTGCAAGAAAAATCAGGTCATTAGTAGGATTATCAAATTCAAATAGGACCAAGAGAATCAGAAAATGCGGGCGAAGAATTGAGTTTCACTCTGGTTGGTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33122</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>25739</contig_pos>
        <strand>+</strand>
        <context>CAAACGGGGR[A/G]GGGGTTCTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGA</left_flank>
        <right_flank>GGGGTTCTAAAAATCACACGGATTATTGATTCTGAAGATCGATGATAGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATATTGTAGGTCTAACAAGGCAGTTCGTTATTTCGGGATTCACTCAGAAGTACTTGAGTTTTCTTTAACAGATAAAAACTCCTTGAAATGCAAAAAAATAATGCTCAAAAAGAATCCGGAAATCCCATGTTTTGCATTACTGAGAAATGGTGCCAAAGGAATGTAGGTGTGAACTCCAAAAAAAAACGGAGTAGACTTTATAATGAATTTTATGTGTCTAAAGGGGTACCTGGAAGTACCATGTCGACCATTGAATCAGGGATATTAAAAAGTCGCAGATTGCATTTTCTGTCGGAGAAAGTAGAGCAAGCTCTAGAGCACATCAAACATCTGGAATAAGTTTTCGATTGGCTCGAATCTACAAATTAAAGGTTTCTGTTCAAGATGAACCCAACCGGAACCATTTTCAGCTTTCCTCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTGATTCTGAAGATCGATGATAGAAAAAAACAAAGGTTGCAAGAAAAATCAGGTCATTAGTAGGATTATCAAATTCAAATAGGACCAAGAGAATCAGAAAATGCGGGCGAAGAATTGAGTTTCACTCTGGTTGGTAAAAAACGGGAAGTTCTGAAAACCACAAGGGTTATTGATACAGATGTTCGATGATAAGAAAAAGCTGTAGGTTACAATACAAAGAGGATTTTTAGAAGGATCATTCATAATCAATTATGGAAAGTAGAATCGAAAGATGGGGGCGAAAAAATGAATTTCACTTTGGTCGGACAAACAAACGGGGGGTTCTAAAAATCACACGGATTATTGATACAGAAGATCGATGATTAAAAAACGGAAGGTTACAGGAAAAAGCAGCTTAATAGAAACATATTTCAATGCAATTCTGATCAAGAGACTTGGAAAATGGAAGAAGTCGGTAAAACAAACAGGGAGTTCA</canonical>
            <polymorphic>TTATATTGTAGGTCTAACAAGGCAGTTCGTTATTTCGGGATTCACTCAGAAGTACTTGAGTTTTCTTTAACAGATAAAAACTCCTTGAAATGCAAAAAAATAATGCTCAAAAAGAATCCGGAAATCCCATGTTTTGCATTACTGAGAAATGGTGCCAAAGGAATGTAGGTGTGAACTCCAAAAAAAAACGGAGTAGACTTTATAATGAATTTTATGTGTCTAAAGGGGTACCTGGAAGTACCATGTCGACCATTGAATCAGGGATATTAAAAAGTCGCAGATTGCATTTTCTGTCGGAGAAAGTAGAGCAAGCTCTAGAGCACATCAAACATCTGGAATAAGTTTTCGATTGGCTCGAATCTACAAATTAAAGGTTTCTGTTCAAGATGAACCCAACCGGAACCATTTTCAGCTTTCCTCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGARGGGGTTCTAAAAATCACACGGATTATTGATTCTGAAGATCGATGATAGAAAAAAACAAAGGTTGCAAGAAAAATCAGGTCATTAGTAGGATTATCAAATTCAAATAGGACCAAGAGAATCAGAAAATGCGGGCGAAGAATTGAGTTTCACTCTGGTTGGTAAAAAACGGGAAGTTCTGAAAACCACAAGGGTTATTGATACAGATGTTCGATGATAAGAAAAAGCTGTAGGTTACAATACAAAGAGGATTTTTAGAAGGATCATTCATAATCAATTATGGAAAGTAGAATCGAAAGATGGGGGCGAAAAAATGAATTTCACTTTGGTCGGACAAACAAACGGGGGGTTCTAAAAATCACACGGATTATTGATACAGAAGATCGATGATTAAAAAACGGAAGGTTACAGGAAAAAGCAGCTTAATAGAAACATATTTCAATGCAATTCTGATCAAGAGACTTGGAAAATGGAAGAAGTCGGTAAAACAAACAGGGAGTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTCGAATCTGAAACTCAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTACCAACCAGAGTGAAACT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTGATTCTGAAGATCGATGATAGAAAAAAACAAAGGTTGCAAGAAAAATCAGGTCATTAGTAGGATTATCAAATTCAAATAGGACCAAGAGAATCAGAAAATGCGGGCGAAGAATTGAGTTTCACTCTGGTTGGTAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGARGGGGTTCTAAAAATCACACGGATTATTGATTCTGAAGATCGATGATAGAAAAAAACAAAGGTTGCAAGAAAAATCAGGTCATTAGTAGGATTATCAAATTCAAATAGGACCAAGAGAATCAGAAAATGCGGGCGAAGAATTGAGTTTCACTCTGGTTGGTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33123</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>25770</contig_pos>
        <strand>+</strand>
        <context>GATTATTGAT[A/T]CWGAAGATCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGGCCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTGAT</left_flank>
        <right_flank>CTGAAGATCGATGATAGAAAAAAACAAAGGTTGCAAGAAAAATCAGGTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCGGGATTCACTCAGAAGTACTTGAGTTTTCTTTAACAGATAAAAACTCCTTGAAATGCAAAAAAATAATGCTCAAAAAGAATCCGGAAATCCCATGTTTTGCATTACTGAGAAATGGTGCCAAAGGAATGTAGGTGTGAACTCCAAAAAAAAACGGAGTAGACTTTATAATGAATTTTATGTGTCTAAAGGGGTACCTGGAAGTACCATGTCGACCATTGAATCAGGGATATTAAAAAGTCGCAGATTGCATTTTCTGTCGGAGAAAGTAGAGCAAGCTCTAGAGCACATCAAACATCTGGAATAAGTTTTCGATTGGCTCGAATCTACAAATTAAAGGTTTCTGTTCAAGATGAACCCAACCGGAACCATTTTCAGCTTTCCTCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTGATTCTGAAGATCGATGATAGAAAAAAACAAAGGTTGCAAGAAAAATCAGGTCATTAGTAGGATTATCAAATTCAAATAGGACCAAGAGAATCAGAAAATGCGGGCGAAGAATTGAGTTTCACTCTGGTTGGTAAAAAACGGGAAGTTCTGAAAACCACAAGGGTTATTGATACAGATGTTCGATGATAAGAAAAAGCTGTAGGTTACAATACAAAGAGGATTTTTAGAAGGATCATTCATAATCAATTATGGAAAGTAGAATCGAAAGATGGGGGCGAAAAAATGAATTTCACTTTGGTCGGACAAACAAACGGGGGGTTCTAAAAATCACACGGATTATTGATACAGAAGATCGATGATTAAAAAACGGAAGGTTACAGGAAAAAGCAGCTTAATAGAAACATATTTCAATGCAATTCTGATCAAGAGACTTGGAAAATGGAAGAAGTCGGTAAAACAAACAGGGAGTTCAGGGGGTTTTCAAATACACTTGGATTAATGAT</canonical>
            <polymorphic>ATTTCGGGATTCACTCAGAAGTACTTGAGTTTTCTTTAACAGATAAAAACTCCTTGAAATGCAAAAAAATAATGCTCAAAAAGAATCCGGAAATCCCATGTTTTGCATTACTGAGAAATGGTGCCAAAGGAATGTAGGTGTGAACTCCAAAAAAAAACGGAGTAGACTTTATAATGAATTTTATGTGTCTAAAGGGGTACCTGGAAGTACCATGTCGACCATTGAATCAGGGATATTAAAAAGTCGCAGATTGCATTTTCTGTCGGAGAAAGTAGAGCAAGCTCTAGAGCACATCAAACATCTGGAATAAGTTTTCGATTGGCTCGAATCTACAAATTAAAGGTTTCTGTTCAAGATGAACCCAACCGGAACCATTTTCAGCTTTCCTCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTGATWCTGAAGATCGATGATAGAAAAAAACAAAGGTTGCAAGAAAAATCAGGTCATTAGTAGGATTATCAAATTCAAATAGGACCAAGAGAATCAGAAAATGCGGGCGAAGAATTGAGTTTCACTCTGGTTGGTAAAAAACGGGAAGTTCTGAAAACCACAAGGGTTATTGATACAGATGTTCGATGATAAGAAAAAGCTGTAGGTTACAATACAAAGAGGATTTTTAGAAGGATCATTCATAATCAATTATGGAAAGTAGAATCGAAAGATGGGGGCGAAAAAATGAATTTCACTTTGGTCGGACAAACAAACGGGGGGTTCTAAAAATCACACGGATTATTGATACAGAAGATCGATGATTAAAAAACGGAAGGTTACAGGAAAAAGCAGCTTAATAGAAACATATTTCAATGCAATTCTGATCAAGAGACTTGGAAAATGGAAGAAGTCGGTAAAACAAACAGGGAGTTCAGGGGGTTTTCAAATACACTTGGATTAATGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>244 171 141 103 102 88 75 68 8</canonical_bands>
                <polymorphic_bands>244 191 171 141 102 75 68 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>248 152 134 119 103 88 83 56 17</canonical_bands>
                <polymorphic_bands>248 191 152 134 119 83 56 17</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>244 171 141 103 102 88 75 68 8</canonical_bands>
                <polymorphic_bands>244 191 171 141 102 75 68 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTCGAATCTGAAACTCAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTACCAACCAGAGTGAAACT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTGATTCTGAAGATCGATGATAGAAAAAAACAAAGGTTGCAAGAAAAATCAGGTCATTAGTAGGATTATCAAATTCAAATAGGACCAAGAGAATCAGAAAATGCGGGCGAAGAATTGAGTTTCACTCTGGTTGGTAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTGATWCTGAAGATCGATGATAGAAAAAAACAAAGGTTGCAAGAAAAATCAGGTCATTAGTAGGATTATCAAATTCAAATAGGACCAAGAGAATCAGAAAATGCGGGCGAAGAATTGAGTTTCACTCTGGTTGGTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33124</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>25772</contig_pos>
        <strand>+</strand>
        <context>TTATTGATWC[A/T]GAAGATCGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGCCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTGATTC</left_flank>
        <right_flank>GAAGATCGATGATAGAAAAAAACAAAGGTTGCAAGAAAAATCAGGTCATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGGGATTCACTCAGAAGTACTTGAGTTTTCTTTAACAGATAAAAACTCCTTGAAATGCAAAAAAATAATGCTCAAAAAGAATCCGGAAATCCCATGTTTTGCATTACTGAGAAATGGTGCCAAAGGAATGTAGGTGTGAACTCCAAAAAAAAACGGAGTAGACTTTATAATGAATTTTATGTGTCTAAAGGGGTACCTGGAAGTACCATGTCGACCATTGAATCAGGGATATTAAAAAGTCGCAGATTGCATTTTCTGTCGGAGAAAGTAGAGCAAGCTCTAGAGCACATCAAACATCTGGAATAAGTTTTCGATTGGCTCGAATCTACAAATTAAAGGTTTCTGTTCAAGATGAACCCAACCGGAACCATTTTCAGCTTTCCTCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTGATTCTGAAGATCGATGATAGAAAAAAACAAAGGTTGCAAGAAAAATCAGGTCATTAGTAGGATTATCAAATTCAAATAGGACCAAGAGAATCAGAAAATGCGGGCGAAGAATTGAGTTTCACTCTGGTTGGTAAAAAACGGGAAGTTCTGAAAACCACAAGGGTTATTGATACAGATGTTCGATGATAAGAAAAAGCTGTAGGTTACAATACAAAGAGGATTTTTAGAAGGATCATTCATAATCAATTATGGAAAGTAGAATCGAAAGATGGGGGCGAAAAAATGAATTTCACTTTGGTCGGACAAACAAACGGGGGGTTCTAAAAATCACACGGATTATTGATACAGAAGATCGATGATTAAAAAACGGAAGGTTACAGGAAAAAGCAGCTTAATAGAAACATATTTCAATGCAATTCTGATCAAGAGACTTGGAAAATGGAAGAAGTCGGTAAAACAAACAGGGAGTTCAGGGGGTTTTCAAATACACTTGGATTAATGATAC</canonical>
            <polymorphic>TTCGGGATTCACTCAGAAGTACTTGAGTTTTCTTTAACAGATAAAAACTCCTTGAAATGCAAAAAAATAATGCTCAAAAAGAATCCGGAAATCCCATGTTTTGCATTACTGAGAAATGGTGCCAAAGGAATGTAGGTGTGAACTCCAAAAAAAAACGGAGTAGACTTTATAATGAATTTTATGTGTCTAAAGGGGTACCTGGAAGTACCATGTCGACCATTGAATCAGGGATATTAAAAAGTCGCAGATTGCATTTTCTGTCGGAGAAAGTAGAGCAAGCTCTAGAGCACATCAAACATCTGGAATAAGTTTTCGATTGGCTCGAATCTACAAATTAAAGGTTTCTGTTCAAGATGAACCCAACCGGAACCATTTTCAGCTTTCCTCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTGATTCWGAAGATCGATGATAGAAAAAAACAAAGGTTGCAAGAAAAATCAGGTCATTAGTAGGATTATCAAATTCAAATAGGACCAAGAGAATCAGAAAATGCGGGCGAAGAATTGAGTTTCACTCTGGTTGGTAAAAAACGGGAAGTTCTGAAAACCACAAGGGTTATTGATACAGATGTTCGATGATAAGAAAAAGCTGTAGGTTACAATACAAAGAGGATTTTTAGAAGGATCATTCATAATCAATTATGGAAAGTAGAATCGAAAGATGGGGGCGAAAAAATGAATTTCACTTTGGTCGGACAAACAAACGGGGGGTTCTAAAAATCACACGGATTATTGATACAGAAGATCGATGATTAAAAAACGGAAGGTTACAGGAAAAAGCAGCTTAATAGAAACATATTTCAATGCAATTCTGATCAAGAGACTTGGAAAATGGAAGAAGTCGGTAAAACAAACAGGGAGTTCAGGGGGTTTTCAAATACACTTGGATTAATGATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTCGAATCTGAAACTCAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTACCAACCAGAGTGAAACT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTGATTCTGAAGATCGATGATAGAAAAAAACAAAGGTTGCAAGAAAAATCAGGTCATTAGTAGGATTATCAAATTCAAATAGGACCAAGAGAATCAGAAAATGCGGGCGAAGAATTGAGTTTCACTCTGGTTGGTAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTGATTCWGAAGATCGATGATAGAAAAAAACAAAGGTTGCAAGAAAAATCAGGTCATTAGTAGGATTATCAAATTCAAATAGGACCAAGAGAATCAGAAAATGCGGGCGAAGAATTGAGTTTCACTCTGGTTGGTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33125</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>25794</contig_pos>
        <strand>+</strand>
        <context>ATAGAAAAAA[A/G]CAAAGGTTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTAAAAATCACACGGATTATTGATTCTGAAGATCGATGATAGAAAAAA</left_flank>
        <right_flank>CAAAGGTTGCAAGAAAAATCAGGTCATTAGTAGGATTATCAAATTCAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAGTTTTCTTTAACAGATAAAAACTCCTTGAAATGCAAAAAAATAATGCTCAAAAAGAATCCGGAAATCCCATGTTTTGCATTACTGAGAAATGGTGCCAAAGGAATGTAGGTGTGAACTCCAAAAAAAAACGGAGTAGACTTTATAATGAATTTTATGTGTCTAAAGGGGTACCTGGAAGTACCATGTCGACCATTGAATCAGGGATATTAAAAAGTCGCAGATTGCATTTTCTGTCGGAGAAAGTAGAGCAAGCTCTAGAGCACATCAAACATCTGGAATAAGTTTTCGATTGGCTCGAATCTACAAATTAAAGGTTTCTGTTCAAGATGAACCCAACCGGAACCATTTTCAGCTTTCCTCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTGATTCTGAAGATCGATGATAGAAAAAAACAAAGGTTGCAAGAAAAATCAGGTCATTAGTAGGATTATCAAATTCAAATAGGACCAAGAGAATCAGAAAATGCGGGCGAAGAATTGAGTTTCACTCTGGTTGGTAAAAAACGGGAAGTTCTGAAAACCACAAGGGTTATTGATACAGATGTTCGATGATAAGAAAAAGCTGTAGGTTACAATACAAAGAGGATTTTTAGAAGGATCATTCATAATCAATTATGGAAAGTAGAATCGAAAGATGGGGGCGAAAAAATGAATTTCACTTTGGTCGGACAAACAAACGGGGGGTTCTAAAAATCACACGGATTATTGATACAGAAGATCGATGATTAAAAAACGGAAGGTTACAGGAAAAAGCAGCTTAATAGAAACATATTTCAATGCAATTCTGATCAAGAGACTTGGAAAATGGAAGAAGTCGGTAAAACAAACAGGGAGTTCAGGGGGTTTTCAAATACACTTGGATTAATGATACACAAAAGCGCTGATATAAAAGC</canonical>
            <polymorphic>TTGAGTTTTCTTTAACAGATAAAAACTCCTTGAAATGCAAAAAAATAATGCTCAAAAAGAATCCGGAAATCCCATGTTTTGCATTACTGAGAAATGGTGCCAAAGGAATGTAGGTGTGAACTCCAAAAAAAAACGGAGTAGACTTTATAATGAATTTTATGTGTCTAAAGGGGTACCTGGAAGTACCATGTCGACCATTGAATCAGGGATATTAAAAAGTCGCAGATTGCATTTTCTGTCGGAGAAAGTAGAGCAAGCTCTAGAGCACATCAAACATCTGGAATAAGTTTTCGATTGGCTCGAATCTACAAATTAAAGGTTTCTGTTCAAGATGAACCCAACCGGAACCATTTTCAGCTTTCCTCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTGATTCTGAAGATCGATGATAGAAAAAARCAAAGGTTGCAAGAAAAATCAGGTCATTAGTAGGATTATCAAATTCAAATAGGACCAAGAGAATCAGAAAATGCGGGCGAAGAATTGAGTTTCACTCTGGTTGGTAAAAAACGGGAAGTTCTGAAAACCACAAGGGTTATTGATACAGATGTTCGATGATAAGAAAAAGCTGTAGGTTACAATACAAAGAGGATTTTTAGAAGGATCATTCATAATCAATTATGGAAAGTAGAATCGAAAGATGGGGGCGAAAAAATGAATTTCACTTTGGTCGGACAAACAAACGGGGGGTTCTAAAAATCACACGGATTATTGATACAGAAGATCGATGATTAAAAAACGGAAGGTTACAGGAAAAAGCAGCTTAATAGAAACATATTTCAATGCAATTCTGATCAAGAGACTTGGAAAATGGAAGAAGTCGGTAAAACAAACAGGGAGTTCAGGGGGTTTTCAAATACACTTGGATTAATGATACACAAAAGCGCTGATATAAAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTCGAATCTGAAACTCAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTACCAACCAGAGTGAAACT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTGATTCTGAAGATCGATGATAGAAAAAAACAAAGGTTGCAAGAAAAATCAGGTCATTAGTAGGATTATCAAATTCAAATAGGACCAAGAGAATCAGAAAATGCGGGCGAAGAATTGAGTTTCACTCTGGTTGGTAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTTCGAATCTGAAACTCAATGTGGAACATTAATATAACGGTTTATTGAATTTCTTTTTGGTCGGCCAAACAAACGGGGAAGGGGTTCTAAAAATCACACGGATTATTGATTCTGAAGATCGATGATAGAAAAAARCAAAGGTTGCAAGAAAAATCAGGTCATTAGTAGGATTATCAAATTCAAATAGGACCAAGAGAATCAGAAAATGCGGGCGAAGAATTGAGTTTCACTCTGGTTGGTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33126</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>56065</contig_pos>
        <strand>+</strand>
        <context>TGAMCCTTAG[C/T]AAAAAAATAG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTGCATTTTTTGTGACTCTGATGTTGAATCAGATACGTTGACCCTTAG</left_flank>
        <right_flank>AAAAAAATAGCGGAATTTTCAATTTTCGAAATCTACAGTGATCAATAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATGTTGCATATTTAGGGGATAGAGGGTCCTTTCGTGCCTTCCCCCCATCATCGACCGGACCAATAAACCTTAGCATGTACCCCCTCGGGTCATGTGTCCTATTTTTTGTGTTTAGAAGATGTACGCGTCAATTTTAGTACAGTAGGAAACAAAACGTTTCTCTTTTCGTTGATTTTTCTTCAATTTTTCATAGTTCAGAAATGGTAGTTTTCAAAACAGGAGTTCGTGATTTCAGAAAACTCTGGATTTTTCAAAAGAAATCCAGTAATTTAATAGAAATTTCAAAATTCAAAATAATAAAAAACTTAGCTATGGAATTTTTAAAATCTACAGTAATCGGATCATTTTATGTTATGTCCTAGAAATGTACTGTTATACATTTAAATAAATACAAAAAAACAGGAAAATCGATTTTCTATTGAAAAATGTTTCTGAATTTTCCCATTTTCTGCATTTTTTGTGACTCTGATGTTGAATCAGATACGTTGACCCTTAGAAAAAAAATAGCGGAATTTTCAATTTTCGAAATCTACAGTGATCAATAATGAATTCCTGGCAATCTCTGAAATTGAAAATCTAGTTTTTTTTCGATTTTCGGAATATCCCTGCTCCATTTTTTCCTCTAAATGCCGATTCTGTATAGGCAATTATCCTTTTTCTTGGCTTTTTTATGACCACTACCATTTAAAAAGCCCTCATCACATTTCCTCCCACAAAAACGACCCAAATTTCTGTTTGCTGAGATCCGCCTTCATTTTCAAATGAGCTTCTCACGCTACAGTAAACCAGTTGAACAGCTGCTTCTTTCCAATTGACATCTTGTCATTTTTCTATGGGATTCTATAGGTCTCCTCGTTCTTCTTCGTAGGAAAATTCTGGAAAATTTAAATTCCTCACAAATATCATTCATTTGTTGTTGTTTTTGACTCCTTGATTCAAATAAGACGGATGAGAAGCGGATGGTCATTATTAGCCAGCCCCAGGAAGACGGATATAT</canonical>
            <polymorphic>AAAATGTTGCATATTTAGGGGATAGAGGGTCCTTTCGTGCCTTCCCCCCATCATCGACCGGACCAATAAACCTTAGCATGTACCCCCTCGGGTCATGTGTCCTATTTTTTGTGTTTAGAAGATGTACGCGTCAATTTTAGTACAGTAGGAAACAAAACGTTTCTCTTTTCGTTGATTTTTCTTCAATTTTTCATAGTTCAGAAATGGTAGTTTTCAAAACAGGAGTTCGTGATTTCAGAAAACTCTGGATTTTTCAAAAGAAATCCAGTAATTTAATAGAAATTTCAAAATTCAAAATAATAAAAAACTTAGCTATGGAATTTTTAAAATCTACAGTAATCGGATCATTTTATGTTATGTCCTAGAAATGTACTGTTATACATTTAAATAAATACAAAAAAACAGGAAAATCGATTTTCTATTGAAAAATGTTTCTGAATTTTCCCATTTTCTGCATTTTTTGTGACTCTGATGTTGAATCAGATACGTTGACCCTTAGYAAAAAAATAGCGGAATTTTCAATTTTCGAAATCTACAGTGATCAATAATGAATTCCTGGCAATCTCTGAAATTGAAAATCTAGTTTTTTTTCGATTTTCGGAATATCCCTGCTCCATTTTTTCCTCTAAATGCCGATTCTGTATAGGCAATTATCCTTTTTCTTGGCTTTTTTATGACCACTACCATTTAAAAAGCCCTCATCACATTTCCTCCCACAAAAACGACCCAAATTTCTGTTTGCTGAGATCCGCCTTCATTTTCAAATGAGCTTCTCACGCTACAGTAAACCAGTTGAACAGCTGCTTCTTTCCAATTGACATCTTGTCATTTTTCTATGGGATTCTATAGGTCTCCTCGTTCTTCTTCGTAGGAAAATTCTGGAAAATTTAAATTCCTCACAAATATCATTCATTTGTTGTTGTTTTTGACTCCTTGATTCAAATAAGACGGATGAGAAGCGGATGGTCATTATTAGCCAGCCCCAGGAAGACGGATATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGGATCATTTTATGTTATGTC</pcr_primer_p1>
		<pcr_primer_p2>AAAACTAGATTTTCAATTTCAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCGGATCATTTTATGTTATGTCCTAGAAATGTACTGTTATACATTTAAATAAATACAAAAAAACAGGAAAATCGATTTTCTATTGAAAAATGTTTCTGAATTTTCCCATTTTCTGCATTTTTTGTGACTCTGATGTTGAATCAGATACGTTGACCCTTAGAAAAAAAATAGCGGAATTTTCAATTTTCGAAATCTACAGTGATCAATAATGAATTCCTGGCAATCTCTGAAATTGAAAATCTAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATCGGATCATTTTATGTTATGTCCTAGAAATGTACTGTTATACATTTAAATAAATACAAAAAAACAGGAAAATCGATTTTCTATTGAAAAATGTTTCTGAATTTTCCCATTTTCTGCATTTTTTGTGACTCTGATGTTGAATCAGATACGTTGACCCTTAGYAAAAAAATAGCGGAATTTTCAATTTTCGAAATCTACAGTGATCAATAATGAATTCCTGGCAATCTCTGAAATTGAAAATCTAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33127</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>59912</contig_pos>
        <strand></strand>
        <context>tatcagttga[T/A]agacttttga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTAACAAAAAAAAATATAGATAATTTGACGGAAAATATTTTATCAGTTGA</left_flank>
        <right_flank>AGACTTTTGATATTTCTTCCAGGAAATGAGATACATGGCTTTGAAGATGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCTATCAACTAATGAAATATTGGTGACATTATGGTAAACAATTTATCAATTGACAATTTTATGATGTTTTTCACAGATACCGAGCAAATTGAGCTCAAGGTTGACGATTTGAGTGAGCTCATAGCAACCCAAAAGTAGGGTCTGAAAAATGTGTTTCACTAGCCTGTTTCACTGAAAGATTTTGACCCAATTTGTGAAGTTCAGATTTTTTTCTTAGCAGTTTTGGATAAGTACGCGCTGAAATTACAATTTGAAACCTGTAAAATAAAAAGAAACAAATCCTTCAAATTTCAAGAAAAAAAGGACAAATATTAAGTACTTTTTAGACCCTCATAATTGGCAACTTTCGACTAATTTTAGCTCGTAAACAGTTAAATATGCTGCCCCAATTAACTCTCACATTTAAACCAATTTATCTCGGTTCCTGTGAAAAGTATCAAAAACTGGTTAACAAAAAAAAATATAGATAATTTGACGGAAAATATTTTATCAGTTGATAGACTTTTGATATTTCTTCCAGGAAATGAGATACATGGCTTTGAAGATGACGGTTTGGGTGCCATTAGGATATTCTGGATTTTTGGTCCACACCACTAAATCTTTTCATAAACCGATGCCTCCAGAATTTCCCAATAATTTTCAACCATTGGCCATTGTACCTCACACTTTCTCTGTTCATCCCATCGACAGCTGTCTCCTCCTACTTCCTTCAAACATTTTTTTGTGCTGAACTTGTCTTTTTGTTATGCGGATTGAGGTATTGCGGGTACACCTACGCCTCTCTTCTCACACTCAAGTTCTCAATCATTGAAAGAACTCAACAGCTGATAAGAAAAATCAAAATCGGAGCAAAAGAAGCATCTCTGATTTCATTTCCGTTGTGTGAAAAGAGAAGCAAGTGAAACAAAACAATAAAAACATTATTATTGTTATTATTCTACCTCTTTTCTAAGCTTGTACTGCAAAAAATCCAGTTTTACTTTCTAAAGGTACTAGTC</canonical>
            <polymorphic>TATCTATCAACTAATGAAATATTGGTGACATTATGGTAAACAATTTATCAATTGACAATTTTATGATGTTTTTCACAGATACCGAGCAAATTGAGCTCAAGGTTGACGATTTGAGTGAGCTCATAGCAACCCAAAAGTAGGGTCTGAAAAATGTGTTTCACTAGCCTGTTTCACTGAAAGATTTTGACCCAATTTGTGAAGTTCAGATTTTTTTCTTAGCAGTTTTGGATAAGTACGCGCTGAAATTACAATTTGAAACCTGTAAAATAAAAAGAAACAAATCCTTCAAATTTCAAGAAAAAAAGGACAAATATTAAGTACTTTTTAGACCCTCATAATTGGCAACTTTCGACTAATTTTAGCTCGTAAACAGTTAAATATGCTGCCCCAATTAACTCTCACATTTAAACCAATTTATCTCGGTTCCTGTGAAAAGTATCAAAAACTGGTTAACAAAAAAAAATATAGATAATTTGACGGAAAATATTTTATCAGTTGAWAGACTTTTGATATTTCTTCCAGGAAATGAGATACATGGCTTTGAAGATGACGGTTTGGGTGCCATTAGGATATTCTGGATTTTTGGTCCACACCACTAAATCTTTTCATAAACCGATGCCTCCAGAATTTCCCAATAATTTTCAACCATTGGCCATTGTACCTCACACTTTCTCTGTTCATCCCATCGACAGCTGTCTCCTCCTACTTCCTTCAAACATTTTTTTGTGCTGAACTTGTCTTTTTGTTATGCGGATTGAGGTATTGCGGGTACACCTACGCCTCTCTTCTCACACTCAAGTTCTCAATCATTGAAAGAACTCAACAGCTGATAAGAAAAATCAAAATCGGAGCAAAAGAAGCATCTCTGATTTCATTTCCGTTGTGTGAAAAGAGAAGCAAGTGAAACAAAACAATAAAAACATTATTATTGTTATTATTCTACCTCTTTTCTAAGCTTGTACTGCAAAAAATCCAGTTTTACTTTCTAAAGGTACTAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGACTAATTTTAGCTCGTAAAC</pcr_primer_p1>
		<pcr_primer_p2>GGACCAAAAATCCAGAATATC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TCGACTAATTTTAGCTCGTAAACAGTTAAATATGCTGCCCCAATTAACTCTCACATTTAAACCAATTTATCTCGGTTCCTGTGAAAAGTATCAAAAACTGGTTAACAAAAAAAAATATAGATAATTTGACGGAAAATATTTTATCAGTTGATAGACTTTTGATATTTCTTCCAGGAAATGAGATACATGGCTTTGAAGATGACGGTTTGGGTGCCATTAGGATATTCTGGATTTTTGGTCC</canonical_amplicon>
		<polymorphic_amplicon>TCGACTAATTTTAGCTCGTAAACAGTTAAATATGCTGCCCCAATTAACTCTCACATTTAAACCAATTTATCTCGGTTCCTGTGAAAAGTATCAAAAACTGGTTAACAAAAAAAAATATAGATAATTTGACGGAAAATATTTTATCAGTTGAWAGACTTTTGATATTTCTTCCAGGAAATGAGATACATGGCTTTGAAGATGACGGTTTGGGTGCCATTAGGATATTCTGGATTTTTGGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33128</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>59980</contig_pos>
        <strand>+</strand>
        <context>ggtgccattA[A/G]GATATTCTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCAGGAAATGAGATACATGGCTTTGAAGATGACGGTTTGGGTGCCATTA</left_flank>
        <right_flank>GATATTCTGGATTTTTGGTCCACACCACTAAATCTTTTCATAAACCGATG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCACAGATACCGAGCAAATTGAGCTCAAGGTTGACGATTTGAGTGAGCTCATAGCAACCCAAAAGTAGGGTCTGAAAAATGTGTTTCACTAGCCTGTTTCACTGAAAGATTTTGACCCAATTTGTGAAGTTCAGATTTTTTTCTTAGCAGTTTTGGATAAGTACGCGCTGAAATTACAATTTGAAACCTGTAAAATAAAAAGAAACAAATCCTTCAAATTTCAAGAAAAAAAGGACAAATATTAAGTACTTTTTAGACCCTCATAATTGGCAACTTTCGACTAATTTTAGCTCGTAAACAGTTAAATATGCTGCCCCAATTAACTCTCACATTTAAACCAATTTATCTCGGTTCCTGTGAAAAGTATCAAAAACTGGTTAACAAAAAAAAATATAGATAATTTGACGGAAAATATTTTATCAGTTGATAGACTTTTGATATTTCTTCCAGGAAATGAGATACATGGCTTTGAAGATGACGGTTTGGGTGCCATTAGGATATTCTGGATTTTTGGTCCACACCACTAAATCTTTTCATAAACCGATGCCTCCAGAATTTCCCAATAATTTTCAACCATTGGCCATTGTACCTCACACTTTCTCTGTTCATCCCATCGACAGCTGTCTCCTCCTACTTCCTTCAAACATTTTTTTGTGCTGAACTTGTCTTTTTGTTATGCGGATTGAGGTATTGCGGGTACACCTACGCCTCTCTTCTCACACTCAAGTTCTCAATCATTGAAAGAACTCAACAGCTGATAAGAAAAATCAAAATCGGAGCAAAAGAAGCATCTCTGATTTCATTTCCGTTGTGTGAAAAGAGAAGCAAGTGAAACAAAACAATAAAAACATTATTATTGTTATTATTCTACCTCTTTTCTAAGCTTGTACTGCAAAAAATCCAGTTTTACTTTCTAAAGGTACTAGTCATATTCTTCAATACAAACGATTTTTTATCTCATTTTGATTAATGCGGTGATAAAATCGACACTATCAT</canonical>
            <polymorphic>TTTTTCACAGATACCGAGCAAATTGAGCTCAAGGTTGACGATTTGAGTGAGCTCATAGCAACCCAAAAGTAGGGTCTGAAAAATGTGTTTCACTAGCCTGTTTCACTGAAAGATTTTGACCCAATTTGTGAAGTTCAGATTTTTTTCTTAGCAGTTTTGGATAAGTACGCGCTGAAATTACAATTTGAAACCTGTAAAATAAAAAGAAACAAATCCTTCAAATTTCAAGAAAAAAAGGACAAATATTAAGTACTTTTTAGACCCTCATAATTGGCAACTTTCGACTAATTTTAGCTCGTAAACAGTTAAATATGCTGCCCCAATTAACTCTCACATTTAAACCAATTTATCTCGGTTCCTGTGAAAAGTATCAAAAACTGGTTAACAAAAAAAAATATAGATAATTTGACGGAAAATATTTTATCAGTTGATAGACTTTTGATATTTCTTCCAGGAAATGAGATACATGGCTTTGAAGATGACGGTTTGGGTGCCATTARGATATTCTGGATTTTTGGTCCACACCACTAAATCTTTTCATAAACCGATGCCTCCAGAATTTCCCAATAATTTTCAACCATTGGCCATTGTACCTCACACTTTCTCTGTTCATCCCATCGACAGCTGTCTCCTCCTACTTCCTTCAAACATTTTTTTGTGCTGAACTTGTCTTTTTGTTATGCGGATTGAGGTATTGCGGGTACACCTACGCCTCTCTTCTCACACTCAAGTTCTCAATCATTGAAAGAACTCAACAGCTGATAAGAAAAATCAAAATCGGAGCAAAAGAAGCATCTCTGATTTCATTTCCGTTGTGTGAAAAGAGAAGCAAGTGAAACAAAACAATAAAAACATTATTATTGTTATTATTCTACCTCTTTTCTAAGCTTGTACTGCAAAAAATCCAGTTTTACTTTCTAAAGGTACTAGTCATATTCTTCAATACAAACGATTTTTTATCTCATTTTGATTAATGCGGTGATAAAATCGACACTATCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTCGTAAACAGTTAAATATGC</pcr_primer_p1>
		<pcr_primer_p2>GTTGAAAATTATTGGGAAATTCT</pcr_primer_p2>
		<pcr_amplicon_size>286</pcr_amplicon_size>
		<canonical_amplicon>AGCTCGTAAACAGTTAAATATGCTGCCCCAATTAACTCTCACATTTAAACCAATTTATCTCGGTTCCTGTGAAAAGTATCAAAAACTGGTTAACAAAAAAAAATATAGATAATTTGACGGAAAATATTTTATCAGTTGATAGACTTTTGATATTTCTTCCAGGAAATGAGATACATGGCTTTGAAGATGACGGTTTGGGTGCCATTAGGATATTCTGGATTTTTGGTCCACACCACTAAATCTTTTCATAAACCGATGCCTCCAGAATTTCCCAATAATTTTCAAC</canonical_amplicon>
		<polymorphic_amplicon>AGCTCGTAAACAGTTAAATATGCTGCCCCAATTAACTCTCACATTTAAACCAATTTATCTCGGTTCCTGTGAAAAGTATCAAAAACTGGTTAACAAAAAAAAATATAGATAATTTGACGGAAAATATTTTATCAGTTGATAGACTTTTGATATTTCTTCCAGGAAATGAGATACATGGCTTTGAAGATGACGGTTTGGGTGCCATTARGATATTCTGGATTTTTGGTCCACACCACTAAATCTTTTCATAAACCGATGCCTCCAGAATTTCCCAATAATTTTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33129</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>68858</contig_pos>
        <strand></strand>
        <context>aaatcgggga[C/A]atcggaaatc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AGAAATGACAAGGTAAGAAGGGTTCAGTGCAGCCTTGTTTAAATCGGGGA</left_flank>
        <right_flank>ATCGGAAATCCGGTATTCCCGGTTTTCCCGAAATTTTTGGCAGGTAATTC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGAGGCTTCCACGCAATTGATTTGGACTCGGCAGCTGTTTATGATATCTACACACCATCGCAGGTAAGAATTAAAAAAATGTAGACTTCTTGATGAAAAACTATTTTCAGAGCGGCCCAACAACAACTCCACATTGCATCGTAGTCCTTCCCAACTCCAATGGCATGCAGCTGCTTCTTTGTTATGACAGTAAGCGAACCGGGAATCCAACATTTTTTCAAAACGTTGAATTTTTCAGACGAGGGAGTCTATGTTAACACCTATGGCCGCATGACAAAAAATGTGGTGCTTCAATGGGGCGAGATGCCAAGCAGTGTGGCTTACATTTCTACTGGACAAATCATGGGATGGGGAAATAAAGCCATCGAGATCAGATCTGTGGACACTGGTCATCTAGATGGAGTTTTCATGCATAAGAAGGCTCAGAAGCTGAAATTCCTGTGCGAGAGAAATGACAAGGTAAGAAGGGTTCAGTGCAGCCTTGTTTAAATCGGGGACATCGGAAATCCGGTATTCCCGGTTTTCCCGAAATTTTTGGCAGGTAATTCGGAGGATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTT</canonical>
            <polymorphic>TTGGAGGCTTCCACGCAATTGATTTGGACTCGGCAGCTGTTTATGATATCTACACACCATCGCAGGTAAGAATTAAAAAAATGTAGACTTCTTGATGAAAAACTATTTTCAGAGCGGCCCAACAACAACTCCACATTGCATCGTAGTCCTTCCCAACTCCAATGGCATGCAGCTGCTTCTTTGTTATGACAGTAAGCGAACCGGGAATCCAACATTTTTTCAAAACGTTGAATTTTTCAGACGAGGGAGTCTATGTTAACACCTATGGCCGCATGACAAAAAATGTGGTGCTTCAATGGGGCGAGATGCCAAGCAGTGTGGCTTACATTTCTACTGGACAAATCATGGGATGGGGAAATAAAGCCATCGAGATCAGATCTGTGGACACTGGTCATCTAGATGGAGTTTTCATGCATAAGAAGGCTCAGAAGCTGAAATTCCTGTGCGAGAGAAATGACAAGGTAAGAAGGGTTCAGTGCAGCCTTGTTTAAATCGGGGAMATCGGAAATCCGGTATTCCCGGTTTTCCCGAAATTTTTGGCAGGTAATTCGGAGGATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGCTTACATTTCTACTGGAC</pcr_primer_p1>
		<pcr_primer_p2>GTTTGTATCCTCCGAATTACC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTGGCTTACATTTCTACTGGACAAATCATGGGATGGGGAAATAAAGCCATCGAGATCAGATCTGTGGACACTGGTCATCTAGATGGAGTTTTCATGCATAAGAAGGCTCAGAAGCTGAAATTCCTGTGCGAGAGAAATGACAAGGTAAGAAGGGTTCAGTGCAGCCTTGTTTAAATCGGGGACATCGGAAATCCGGTATTCCCGGTTTTCCCGAAATTTTTGGCAGGTAATTCGGAGGATACAAAC</canonical_amplicon>
		<polymorphic_amplicon>GTGGCTTACATTTCTACTGGACAAATCATGGGATGGGGAAATAAAGCCATCGAGATCAGATCTGTGGACACTGGTCATCTAGATGGAGTTTTCATGCATAAGAAGGCTCAGAAGCTGAAATTCCTGTGCGAGAGAAATGACAAGGTAAGAAGGGTTCAGTGCAGCCTTGTTTAAATCGGGGAMATCGGAAATCCGGTATTCCCGGTTTTCCCGAAATTTTTGGCAGGTAATTCGGAGGATACAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33130</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>68943</contig_pos>
        <strand>+</strand>
        <context>ATTAATGTAC[A/G]AAACAATTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGGCAGGTAATTCGGAGGATACAAACGTTTTGAGGTCATTAATGTAC</left_flank>
        <right_flank>AAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTTCTTGATGAAAAACTATTTTCAGAGCGGCCCAACAACAACTCCACATTGCATCGTAGTCCTTCCCAACTCCAATGGCATGCAGCTGCTTCTTTGTTATGACAGTAAGCGAACCGGGAATCCAACATTTTTTCAAAACGTTGAATTTTTCAGACGAGGGAGTCTATGTTAACACCTATGGCCGCATGACAAAAAATGTGGTGCTTCAATGGGGCGAGATGCCAAGCAGTGTGGCTTACATTTCTACTGGACAAATCATGGGATGGGGAAATAAAGCCATCGAGATCAGATCTGTGGACACTGGTCATCTAGATGGAGTTTTCATGCATAAGAAGGCTCAGAAGCTGAAATTCCTGTGCGAGAGAAATGACAAGGTAAGAAGGGTTCAGTGCAGCCTTGTTTAAATCGGGGACATCGGAAATCCGGTATTCCCGGTTTTCCCGAAATTTTTGGCAGGTAATTCGGAGGATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACAAAAATGTTTTATTGCTCTTCAAAATTCAATTTTTCAGGTGTTCTTCTCCTCTGCAAAAGGTGGCGGCTCTTGCCAAA</canonical>
            <polymorphic>GACTTCTTGATGAAAAACTATTTTCAGAGCGGCCCAACAACAACTCCACATTGCATCGTAGTCCTTCCCAACTCCAATGGCATGCAGCTGCTTCTTTGTTATGACAGTAAGCGAACCGGGAATCCAACATTTTTTCAAAACGTTGAATTTTTCAGACGAGGGAGTCTATGTTAACACCTATGGCCGCATGACAAAAAATGTGGTGCTTCAATGGGGCGAGATGCCAAGCAGTGTGGCTTACATTTCTACTGGACAAATCATGGGATGGGGAAATAAAGCCATCGAGATCAGATCTGTGGACACTGGTCATCTAGATGGAGTTTTCATGCATAAGAAGGCTCAGAAGCTGAAATTCCTGTGCGAGAGAAATGACAAGGTAAGAAGGGTTCAGTGCAGCCTTGTTTAAATCGGGGACATCGGAAATCCGGTATTCCCGGTTTTCCCGAAATTTTTGGCAGGTAATTCGGAGGATACAAACGTTTTGAGGTCATTAATGTACRAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACAAAAATGTTTTATTGCTCTTCAAAATTCAATTTTTCAGGTGTTCTTCTCCTCTGCAAAAGGTGGCGGCTCTTGCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAAGGTAAGAAGGGTTCAG</pcr_primer_p1>
		<pcr_primer_p2>TGAGAGAAAATAAGCAGAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>346</pcr_amplicon_size>
		<canonical_amplicon>GACAAGGTAAGAAGGGTTCAGTGCAGCCTTGTTTAAATCGGGGACATCGGAAATCCGGTATTCCCGGTTTTCCCGAAATTTTTGGCAGGTAATTCGGAGGATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCA</canonical_amplicon>
		<polymorphic_amplicon>GACAAGGTAAGAAGGGTTCAGTGCAGCCTTGTTTAAATCGGGGACATCGGAAATCCGGTATTCCCGGTTTTCCCGAAATTTTTGGCAGGTAATTCGGAGGATACAAACGTTTTGAGGTCATTAATGTACRAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33131</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>68955</contig_pos>
        <strand>+</strand>
        <context>AACAATTTTT[C/T]CAAAATACCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCGGAGGATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTT</left_flank>
        <right_flank>CAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTAC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAACTATTTTCAGAGCGGCCCAACAACAACTCCACATTGCATCGTAGTCCTTCCCAACTCCAATGGCATGCAGCTGCTTCTTTGTTATGACAGTAAGCGAACCGGGAATCCAACATTTTTTCAAAACGTTGAATTTTTCAGACGAGGGAGTCTATGTTAACACCTATGGCCGCATGACAAAAAATGTGGTGCTTCAATGGGGCGAGATGCCAAGCAGTGTGGCTTACATTTCTACTGGACAAATCATGGGATGGGGAAATAAAGCCATCGAGATCAGATCTGTGGACACTGGTCATCTAGATGGAGTTTTCATGCATAAGAAGGCTCAGAAGCTGAAATTCCTGTGCGAGAGAAATGACAAGGTAAGAAGGGTTCAGTGCAGCCTTGTTTAAATCGGGGACATCGGAAATCCGGTATTCCCGGTTTTCCCGAAATTTTTGGCAGGTAATTCGGAGGATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACAAAAATGTTTTATTGCTCTTCAAAATTCAATTTTTCAGGTGTTCTTCTCCTCTGCAAAAGGTGGCGGCTCTTGCCAAATCTATTTCATGA</canonical>
            <polymorphic>AAAAACTATTTTCAGAGCGGCCCAACAACAACTCCACATTGCATCGTAGTCCTTCCCAACTCCAATGGCATGCAGCTGCTTCTTTGTTATGACAGTAAGCGAACCGGGAATCCAACATTTTTTCAAAACGTTGAATTTTTCAGACGAGGGAGTCTATGTTAACACCTATGGCCGCATGACAAAAAATGTGGTGCTTCAATGGGGCGAGATGCCAAGCAGTGTGGCTTACATTTCTACTGGACAAATCATGGGATGGGGAAATAAAGCCATCGAGATCAGATCTGTGGACACTGGTCATCTAGATGGAGTTTTCATGCATAAGAAGGCTCAGAAGCTGAAATTCCTGTGCGAGAGAAATGACAAGGTAAGAAGGGTTCAGTGCAGCCTTGTTTAAATCGGGGACATCGGAAATCCGGTATTCCCGGTTTTCCCGAAATTTTTGGCAGGTAATTCGGAGGATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTYCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACAAAAATGTTTTATTGCTCTTCAAAATTCAATTTTTCAGGTGTTCTTCTCCTCTGCAAAAGGTGGCGGCTCTTGCCAAATCTATTTCATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTAATTCGGAGGATACAAAC</pcr_primer_p1>
		<pcr_primer_p2>TGAGAGAAAATAAGCAGAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>GGTAATTCGGAGGATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCA</canonical_amplicon>
		<polymorphic_amplicon>GGTAATTCGGAGGATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTYCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33132</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>69067</contig_pos>
        <strand>+</strand>
        <context>ATTATGTGCT[A/G]AAAACTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCT</left_flank>
        <right_flank>AAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACATTTTTTCAAAACGTTGAATTTTTCAGACGAGGGAGTCTATGTTAACACCTATGGCCGCATGACAAAAAATGTGGTGCTTCAATGGGGCGAGATGCCAAGCAGTGTGGCTTACATTTCTACTGGACAAATCATGGGATGGGGAAATAAAGCCATCGAGATCAGATCTGTGGACACTGGTCATCTAGATGGAGTTTTCATGCATAAGAAGGCTCAGAAGCTGAAATTCCTGTGCGAGAGAAATGACAAGGTAAGAAGGGTTCAGTGCAGCCTTGTTTAAATCGGGGACATCGGAAATCCGGTATTCCCGGTTTTCCCGAAATTTTTGGCAGGTAATTCGGAGGATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACAAAAATGTTTTATTGCTCTTCAAAATTCAATTTTTCAGGTGTTCTTCTCCTCTGCAAAAGGTGGCGGCTCTTGCCAAATCTATTTCATGACTCTGAACAAACCAGGACTCACTAATTGGTAATCAGAACAATTTTCCATTTAAGTAATAATTATTTATGTGATTTTTCCATTCGAACACCTCGTCTTCTCCCCCAAATTATT</canonical>
            <polymorphic>CAACATTTTTTCAAAACGTTGAATTTTTCAGACGAGGGAGTCTATGTTAACACCTATGGCCGCATGACAAAAAATGTGGTGCTTCAATGGGGCGAGATGCCAAGCAGTGTGGCTTACATTTCTACTGGACAAATCATGGGATGGGGAAATAAAGCCATCGAGATCAGATCTGTGGACACTGGTCATCTAGATGGAGTTTTCATGCATAAGAAGGCTCAGAAGCTGAAATTCCTGTGCGAGAGAAATGACAAGGTAAGAAGGGTTCAGTGCAGCCTTGTTTAAATCGGGGACATCGGAAATCCGGTATTCCCGGTTTTCCCGAAATTTTTGGCAGGTAATTCGGAGGATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTRAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACAAAAATGTTTTATTGCTCTTCAAAATTCAATTTTTCAGGTGTTCTTCTCCTCTGCAAAAGGTGGCGGCTCTTGCCAAATCTATTTCATGACTCTGAACAAACCAGGACTCACTAATTGGTAATCAGAACAATTTTCCATTTAAGTAATAATTATTTATGTGATTTTTCCATTCGAACACCTCGTCTTCTCCCCCAAATTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACAAACGTTTTGAGGTCATTA</pcr_primer_p1>
		<pcr_primer_p2>TGAGAGAAAATAAGCAGAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCA</canonical_amplicon>
		<polymorphic_amplicon>ATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTRAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33133</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>69103</contig_pos>
        <strand>+</strand>
        <context>GTTGGAAAAA[G/T]GTTTGAAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAA</left_flank>
        <right_flank>GTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGTCTATGTTAACACCTATGGCCGCATGACAAAAAATGTGGTGCTTCAATGGGGCGAGATGCCAAGCAGTGTGGCTTACATTTCTACTGGACAAATCATGGGATGGGGAAATAAAGCCATCGAGATCAGATCTGTGGACACTGGTCATCTAGATGGAGTTTTCATGCATAAGAAGGCTCAGAAGCTGAAATTCCTGTGCGAGAGAAATGACAAGGTAAGAAGGGTTCAGTGCAGCCTTGTTTAAATCGGGGACATCGGAAATCCGGTATTCCCGGTTTTCCCGAAATTTTTGGCAGGTAATTCGGAGGATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACAAAAATGTTTTATTGCTCTTCAAAATTCAATTTTTCAGGTGTTCTTCTCCTCTGCAAAAGGTGGCGGCTCTTGCCAAATCTATTTCATGACTCTGAACAAACCAGGACTCACTAATTGGTAATCAGAACAATTTTCCATTTAAGTAATAATTATTTATGTGATTTTTCCATTCGAACACCTCGTCTTCTCCCCCAAATTATTTTTTTCTGGCCTTTTTCATCCGCCCCCCCCCCCCAA</canonical>
            <polymorphic>GGAGTCTATGTTAACACCTATGGCCGCATGACAAAAAATGTGGTGCTTCAATGGGGCGAGATGCCAAGCAGTGTGGCTTACATTTCTACTGGACAAATCATGGGATGGGGAAATAAAGCCATCGAGATCAGATCTGTGGACACTGGTCATCTAGATGGAGTTTTCATGCATAAGAAGGCTCAGAAGCTGAAATTCCTGTGCGAGAGAAATGACAAGGTAAGAAGGGTTCAGTGCAGCCTTGTTTAAATCGGGGACATCGGAAATCCGGTATTCCCGGTTTTCCCGAAATTTTTGGCAGGTAATTCGGAGGATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAAKGTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACAAAAATGTTTTATTGCTCTTCAAAATTCAATTTTTCAGGTGTTCTTCTCCTCTGCAAAAGGTGGCGGCTCTTGCCAAATCTATTTCATGACTCTGAACAAACCAGGACTCACTAATTGGTAATCAGAACAATTTTCCATTTAAGTAATAATTATTTATGTGATTTTTCCATTCGAACACCTCGTCTTCTCCCCCAAATTATTTTTTTCTGGCCTTTTTCATCCGCCCCCCCCCCCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACAAACGTTTTGAGGTCATTA</pcr_primer_p1>
		<pcr_primer_p2>TGAGAGAAAATAAGCAGAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCA</canonical_amplicon>
		<polymorphic_amplicon>ATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAAKGTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33134</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>69116</contig_pos>
        <strand>+</strand>
        <context>TTGAAAACAA[C/T]TGATCCTTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAA</left_flank>
        <right_flank>TGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCAATTTCTT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACCTATGGCCGCATGACAAAAAATGTGGTGCTTCAATGGGGCGAGATGCCAAGCAGTGTGGCTTACATTTCTACTGGACAAATCATGGGATGGGGAAATAAAGCCATCGAGATCAGATCTGTGGACACTGGTCATCTAGATGGAGTTTTCATGCATAAGAAGGCTCAGAAGCTGAAATTCCTGTGCGAGAGAAATGACAAGGTAAGAAGGGTTCAGTGCAGCCTTGTTTAAATCGGGGACATCGGAAATCCGGTATTCCCGGTTTTCCCGAAATTTTTGGCAGGTAATTCGGAGGATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACAAAAATGTTTTATTGCTCTTCAAAATTCAATTTTTCAGGTGTTCTTCTCCTCTGCAAAAGGTGGCGGCTCTTGCCAAATCTATTTCATGACTCTGAACAAACCAGGACTCACTAATTGGTAATCAGAACAATTTTCCATTTAAGTAATAATTATTTATGTGATTTTTCCATTCGAACACCTCGTCTTCTCCCCCAAATTATTTTTTTCTGGCCTTTTTCATCCGCCCCCCCCCCCCAAAATCTCCAATACT</canonical>
            <polymorphic>ACACCTATGGCCGCATGACAAAAAATGTGGTGCTTCAATGGGGCGAGATGCCAAGCAGTGTGGCTTACATTTCTACTGGACAAATCATGGGATGGGGAAATAAAGCCATCGAGATCAGATCTGTGGACACTGGTCATCTAGATGGAGTTTTCATGCATAAGAAGGCTCAGAAGCTGAAATTCCTGTGCGAGAGAAATGACAAGGTAAGAAGGGTTCAGTGCAGCCTTGTTTAAATCGGGGACATCGGAAATCCGGTATTCCCGGTTTTCCCGAAATTTTTGGCAGGTAATTCGGAGGATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAAYTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACAAAAATGTTTTATTGCTCTTCAAAATTCAATTTTTCAGGTGTTCTTCTCCTCTGCAAAAGGTGGCGGCTCTTGCCAAATCTATTTCATGACTCTGAACAAACCAGGACTCACTAATTGGTAATCAGAACAATTTTCCATTTAAGTAATAATTATTTATGTGATTTTTCCATTCGAACACCTCGTCTTCTCCCCCAAATTATTTTTTTCTGGCCTTTTTCATCCGCCCCCCCCCCCCAAAATCTCCAATACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>177 118 96 86 85 73 56 47 45 44 37 27 20 19 16 14 14 14 7 5</canonical_bands>
                <polymorphic_bands>177 163 96 86 85 73 56 47 44 37 27 20 19 16 14 14 14 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACAAACGTTTTGAGGTCATTA</pcr_primer_p1>
		<pcr_primer_p2>TGTTCGGGAAATAACTTTTTAGT</pcr_primer_p2>
		<pcr_amplicon_size>453</pcr_amplicon_size>
		<canonical_amplicon>ATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACA</canonical_amplicon>
		<polymorphic_amplicon>ATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAAYTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33135</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>69132</contig_pos>
        <strand>+</strand>
        <context>CTTATTGTTT[C/T]AAATAAGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTT</left_flank>
        <right_flank>AAATAAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACAAAAAATGTGGTGCTTCAATGGGGCGAGATGCCAAGCAGTGTGGCTTACATTTCTACTGGACAAATCATGGGATGGGGAAATAAAGCCATCGAGATCAGATCTGTGGACACTGGTCATCTAGATGGAGTTTTCATGCATAAGAAGGCTCAGAAGCTGAAATTCCTGTGCGAGAGAAATGACAAGGTAAGAAGGGTTCAGTGCAGCCTTGTTTAAATCGGGGACATCGGAAATCCGGTATTCCCGGTTTTCCCGAAATTTTTGGCAGGTAATTCGGAGGATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACAAAAATGTTTTATTGCTCTTCAAAATTCAATTTTTCAGGTGTTCTTCTCCTCTGCAAAAGGTGGCGGCTCTTGCCAAATCTATTTCATGACTCTGAACAAACCAGGACTCACTAATTGGTAATCAGAACAATTTTCCATTTAAGTAATAATTATTTATGTGATTTTTCCATTCGAACACCTCGTCTTCTCCCCCAAATTATTTTTTTCTGGCCTTTTTCATCCGCCCCCCCCCCCCAAAATCTCCAATACTTTCCGCAACTGTATTT</canonical>
            <polymorphic>GACAAAAAATGTGGTGCTTCAATGGGGCGAGATGCCAAGCAGTGTGGCTTACATTTCTACTGGACAAATCATGGGATGGGGAAATAAAGCCATCGAGATCAGATCTGTGGACACTGGTCATCTAGATGGAGTTTTCATGCATAAGAAGGCTCAGAAGCTGAAATTCCTGTGCGAGAGAAATGACAAGGTAAGAAGGGTTCAGTGCAGCCTTGTTTAAATCGGGGACATCGGAAATCCGGTATTCCCGGTTTTCCCGAAATTTTTGGCAGGTAATTCGGAGGATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTTYAAATAAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACAAAAATGTTTTATTGCTCTTCAAAATTCAATTTTTCAGGTGTTCTTCTCCTCTGCAAAAGGTGGCGGCTCTTGCCAAATCTATTTCATGACTCTGAACAAACCAGGACTCACTAATTGGTAATCAGAACAATTTTCCATTTAAGTAATAATTATTTATGTGATTTTTCCATTCGAACACCTCGTCTTCTCCCCCAAATTATTTTTTTCTGGCCTTTTTCATCCGCCCCCCCCCCCCAAAATCTCCAATACTTTCCGCAACTGTATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACAAACGTTTTGAGGTCATTA</pcr_primer_p1>
		<pcr_primer_p2>TGTTCGGGAAATAACTTTTTAGT</pcr_primer_p2>
		<pcr_amplicon_size>453</pcr_amplicon_size>
		<canonical_amplicon>ATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACA</canonical_amplicon>
		<polymorphic_amplicon>ATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTTYAAATAAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33136</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>69196</contig_pos>
        <strand></strand>
        <context>cacgaaaatg[C/A]attggaatct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATG</left_flank>
        <right_flank>ATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAATCATGGGATGGGGAAATAAAGCCATCGAGATCAGATCTGTGGACACTGGTCATCTAGATGGAGTTTTCATGCATAAGAAGGCTCAGAAGCTGAAATTCCTGTGCGAGAGAAATGACAAGGTAAGAAGGGTTCAGTGCAGCCTTGTTTAAATCGGGGACATCGGAAATCCGGTATTCCCGGTTTTCCCGAAATTTTTGGCAGGTAATTCGGAGGATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACAAAAATGTTTTATTGCTCTTCAAAATTCAATTTTTCAGGTGTTCTTCTCCTCTGCAAAAGGTGGCGGCTCTTGCCAAATCTATTTCATGACTCTGAACAAACCAGGACTCACTAATTGGTAATCAGAACAATTTTCCATTTAAGTAATAATTATTTATGTGATTTTTCCATTCGAACACCTCGTCTTCTCCCCCAAATTATTTTTTTCTGGCCTTTTTCATCCGCCCCCCCCCCCCAAAATCTCCAATACTTTCCGCAACTGTATTTGAACAATCCAGGATTTCAATTAGTCGCCTCCAATTACTACTAAATTTAAAAAAAAATTTCATCC</canonical>
            <polymorphic>CAAATCATGGGATGGGGAAATAAAGCCATCGAGATCAGATCTGTGGACACTGGTCATCTAGATGGAGTTTTCATGCATAAGAAGGCTCAGAAGCTGAAATTCCTGTGCGAGAGAAATGACAAGGTAAGAAGGGTTCAGTGCAGCCTTGTTTAAATCGGGGACATCGGAAATCCGGTATTCCCGGTTTTCCCGAAATTTTTGGCAGGTAATTCGGAGGATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGMATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACAAAAATGTTTTATTGCTCTTCAAAATTCAATTTTTCAGGTGTTCTTCTCCTCTGCAAAAGGTGGCGGCTCTTGCCAAATCTATTTCATGACTCTGAACAAACCAGGACTCACTAATTGGTAATCAGAACAATTTTCCATTTAAGTAATAATTATTTATGTGATTTTTCCATTCGAACACCTCGTCTTCTCCCCCAAATTATTTTTTTCTGGCCTTTTTCATCCGCCCCCCCCCCCCAAAATCTCCAATACTTTCCGCAACTGTATTTGAACAATCCAGGATTTCAATTAGTCGCCTCCAATTACTACTAAATTTAAAAAAAAATTTCATCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATGCAT</site>
                <isoschizomers>
                    <enzyme>BfrBI</enzyme>
                    <enzyme>EcoT22I</enzyme>
                    <enzyme>Mph1103I</enzyme>
                    <enzyme>NsiI</enzyme>
                    <enzyme>Ppu10I</enzyme>
                    <enzyme>Zsp2I</enzyme>
                </isoschizomers>
                <canonical_bands>501 424 75</canonical_bands>
                <polymorphic_bands>925 75</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>359 277 224 75 65</canonical_bands>
                <polymorphic_bands>583 277 75 65</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTTCTGCTTATTTTCTCTCA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTGTTCGGGAAATAACTT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>AAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGMATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33137</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>69312</contig_pos>
        <strand></strand>
        <context>aattcgcgat[A/T]wataatttTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGAT</left_flank>
        <right_flank>TATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACAAGGTAAGAAGGGTTCAGTGCAGCCTTGTTTAAATCGGGGACATCGGAAATCCGGTATTCCCGGTTTTCCCGAAATTTTTGGCAGGTAATTCGGAGGATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACAAAAATGTTTTATTGCTCTTCAAAATTCAATTTTTCAGGTGTTCTTCTCCTCTGCAAAAGGTGGCGGCTCTTGCCAAATCTATTTCATGACTCTGAACAAACCAGGACTCACTAATTGGTAATCAGAACAATTTTCCATTTAAGTAATAATTATTTATGTGATTTTTCCATTCGAACACCTCGTCTTCTCCCCCAAATTATTTTTTTCTGGCCTTTTTCATCCGCCCCCCCCCCCCAAAATCTCCAATACTTTCCGCAACTGTATTTGAACAATCCAGGATTTCAATTAGTCGCCTCCAATTACTACTAAATTTAAAAAAAAATTTCATCCCAGTCAAAAAACAATGTTCTATGTACCTTCTCAACAGAAAAAATAAGATAAAAACTTGCTCACTTTGTGATTAAATCGCTTTCTAGGCATTTCATGTACACTTTTAACAAAACCTG</canonical>
            <polymorphic>TGACAAGGTAAGAAGGGTTCAGTGCAGCCTTGTTTAAATCGGGGACATCGGAAATCCGGTATTCCCGGTTTTCCCGAAATTTTTGGCAGGTAATTCGGAGGATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATWTATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACAAAAATGTTTTATTGCTCTTCAAAATTCAATTTTTCAGGTGTTCTTCTCCTCTGCAAAAGGTGGCGGCTCTTGCCAAATCTATTTCATGACTCTGAACAAACCAGGACTCACTAATTGGTAATCAGAACAATTTTCCATTTAAGTAATAATTATTTATGTGATTTTTCCATTCGAACACCTCGTCTTCTCCCCCAAATTATTTTTTTCTGGCCTTTTTCATCCGCCCCCCCCCCCCAAAATCTCCAATACTTTCCGCAACTGTATTTGAACAATCCAGGATTTCAATTAGTCGCCTCCAATTACTACTAAATTTAAAAAAAAATTTCATCCCAGTCAAAAAACAATGTTCTATGTACCTTCTCAACAGAAAAAATAAGATAAAAACTTGCTCACTTTGTGATTAAATCGCTTTCTAGGCATTTCATGTACACTTTTAACAAAACCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTTCTGCTTATTTTCTCTCA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTGTTCGGGAAATAACTT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>AAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATWTATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33138</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>69313</contig_pos>
        <strand></strand>
        <context>attcgcgatw[T/A]ataatttTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATA</left_flank>
        <right_flank>ATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACAAGGTAAGAAGGGTTCAGTGCAGCCTTGTTTAAATCGGGGACATCGGAAATCCGGTATTCCCGGTTTTCCCGAAATTTTTGGCAGGTAATTCGGAGGATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACAAAAATGTTTTATTGCTCTTCAAAATTCAATTTTTCAGGTGTTCTTCTCCTCTGCAAAAGGTGGCGGCTCTTGCCAAATCTATTTCATGACTCTGAACAAACCAGGACTCACTAATTGGTAATCAGAACAATTTTCCATTTAAGTAATAATTATTTATGTGATTTTTCCATTCGAACACCTCGTCTTCTCCCCCAAATTATTTTTTTCTGGCCTTTTTCATCCGCCCCCCCCCCCCAAAATCTCCAATACTTTCCGCAACTGTATTTGAACAATCCAGGATTTCAATTAGTCGCCTCCAATTACTACTAAATTTAAAAAAAAATTTCATCCCAGTCAAAAAACAATGTTCTATGTACCTTCTCAACAGAAAAAATAAGATAAAAACTTGCTCACTTTGTGATTAAATCGCTTTCTAGGCATTTCATGTACACTTTTAACAAAACCTGC</canonical>
            <polymorphic>GACAAGGTAAGAAGGGTTCAGTGCAGCCTTGTTTAAATCGGGGACATCGGAAATCCGGTATTCCCGGTTTTCCCGAAATTTTTGGCAGGTAATTCGGAGGATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATAWATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACAAAAATGTTTTATTGCTCTTCAAAATTCAATTTTTCAGGTGTTCTTCTCCTCTGCAAAAGGTGGCGGCTCTTGCCAAATCTATTTCATGACTCTGAACAAACCAGGACTCACTAATTGGTAATCAGAACAATTTTCCATTTAAGTAATAATTATTTATGTGATTTTTCCATTCGAACACCTCGTCTTCTCCCCCAAATTATTTTTTTCTGGCCTTTTTCATCCGCCCCCCCCCCCCAAAATCTCCAATACTTTCCGCAACTGTATTTGAACAATCCAGGATTTCAATTAGTCGCCTCCAATTACTACTAAATTTAAAAAAAAATTTCATCCCAGTCAAAAAACAATGTTCTATGTACCTTCTCAACAGAAAAAATAAGATAAAAACTTGCTCACTTTGTGATTAAATCGCTTTCTAGGCATTTCATGTACACTTTTAACAAAACCTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTTCTGCTTATTTTCTCTCA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTGTTCGGGAAATAACTT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>AAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATAWATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33139</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>69339</contig_pos>
        <strand>+</strand>
        <context>ATATTATTTA[A/G]AAAAACTAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTA</left_flank>
        <right_flank>AAAAACTAAAAAGTTATTTCCCGAACAAAAATGTTTTATTGCTCTTCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTGTTTAAATCGGGGACATCGGAAATCCGGTATTCCCGGTTTTCCCGAAATTTTTGGCAGGTAATTCGGAGGATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACAAAAATGTTTTATTGCTCTTCAAAATTCAATTTTTCAGGTGTTCTTCTCCTCTGCAAAAGGTGGCGGCTCTTGCCAAATCTATTTCATGACTCTGAACAAACCAGGACTCACTAATTGGTAATCAGAACAATTTTCCATTTAAGTAATAATTATTTATGTGATTTTTCCATTCGAACACCTCGTCTTCTCCCCCAAATTATTTTTTTCTGGCCTTTTTCATCCGCCCCCCCCCCCCAAAATCTCCAATACTTTCCGCAACTGTATTTGAACAATCCAGGATTTCAATTAGTCGCCTCCAATTACTACTAAATTTAAAAAAAAATTTCATCCCAGTCAAAAAACAATGTTCTATGTACCTTCTCAACAGAAAAAATAAGATAAAAACTTGCTCACTTTGTGATTAAATCGCTTTCTAGGCATTTCATGTACACTTTTAACAAAACCTGCACCCCCAAACCCCTCCGAAAGTGCTC</canonical>
            <polymorphic>CCTTGTTTAAATCGGGGACATCGGAAATCCGGTATTCCCGGTTTTCCCGAAATTTTTGGCAGGTAATTCGGAGGATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTARAAAAACTAAAAAGTTATTTCCCGAACAAAAATGTTTTATTGCTCTTCAAAATTCAATTTTTCAGGTGTTCTTCTCCTCTGCAAAAGGTGGCGGCTCTTGCCAAATCTATTTCATGACTCTGAACAAACCAGGACTCACTAATTGGTAATCAGAACAATTTTCCATTTAAGTAATAATTATTTATGTGATTTTTCCATTCGAACACCTCGTCTTCTCCCCCAAATTATTTTTTTCTGGCCTTTTTCATCCGCCCCCCCCCCCCAAAATCTCCAATACTTTCCGCAACTGTATTTGAACAATCCAGGATTTCAATTAGTCGCCTCCAATTACTACTAAATTTAAAAAAAAATTTCATCCCAGTCAAAAAACAATGTTCTATGTACCTTCTCAACAGAAAAAATAAGATAAAAACTTGCTCACTTTGTGATTAAATCGCTTTCTAGGCATTTCATGTACACTTTTAACAAAACCTGCACCCCCAAACCCCTCCGAAAGTGCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>474 342 160 16 8</canonical_bands>
                <polymorphic_bands>474 358 160 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>329 173 169 89 88 57 39 33 16 7</canonical_bands>
                <polymorphic_bands>329 185 173 89 88 57 39 33 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTTCTGCTTATTTTCTCTCA</pcr_primer_p1>
		<pcr_primer_p2>GAAGAACACCTGAAAAATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>276</pcr_amplicon_size>
		<canonical_amplicon>AAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACAAAAATGTTTTATTGCTCTTCAAAATTCAATTTTTCAGGTGTTCTTC</canonical_amplicon>
		<polymorphic_amplicon>AAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTARAAAAACTAAAAAGTTATTTCCCGAACAAAAATGTTTTATTGCTCTTCAAAATTCAATTTTTCAGGTGTTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33140</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>69372</contig_pos>
        <strand></strand>
        <context>GAACAAAAAT[G/A]TTTTATTGCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACAAAAAT</left_flank>
        <right_flank>TTTTATTGCTCTTCAAAATTCAATTTTTCAGGTGTTCTTCTCCTCTGCAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCCCGGTTTTCCCGAAATTTTTGGCAGGTAATTCGGAGGATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACAAAAATGTTTTATTGCTCTTCAAAATTCAATTTTTCAGGTGTTCTTCTCCTCTGCAAAAGGTGGCGGCTCTTGCCAAATCTATTTCATGACTCTGAACAAACCAGGACTCACTAATTGGTAATCAGAACAATTTTCCATTTAAGTAATAATTATTTATGTGATTTTTCCATTCGAACACCTCGTCTTCTCCCCCAAATTATTTTTTTCTGGCCTTTTTCATCCGCCCCCCCCCCCCAAAATCTCCAATACTTTCCGCAACTGTATTTGAACAATCCAGGATTTCAATTAGTCGCCTCCAATTACTACTAAATTTAAAAAAAAATTTCATCCCAGTCAAAAAACAATGTTCTATGTACCTTCTCAACAGAAAAAATAAGATAAAAACTTGCTCACTTTGTGATTAAATCGCTTTCTAGGCATTTCATGTACACTTTTAACAAAACCTGCACCCCCAAACCCCTCCGAAAGTGCTCATATTCTATATTTTTCTTCACACCGATATTTTT</canonical>
            <polymorphic>ATTCCCGGTTTTCCCGAAATTTTTGGCAGGTAATTCGGAGGATACAAACGTTTTGAGGTCATTAATGTACGAAACAATTTTTTCAAAATACCTGAAAATCCGAATTTCGTACCCCGAATTAATAATTTTGTACCCCTCAATCCCTTTGTGCCCCATTGTACCCCCAAAATGTCGTTCCCTCCGGATTATGTGCTAAAAACTTTTTTGAATAAAAAAGTTTGTTGGAAAAATGTTTGAAAACAATTGATCCTTATTGTTTCAAATAAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACAAAAATRTTTTATTGCTCTTCAAAATTCAATTTTTCAGGTGTTCTTCTCCTCTGCAAAAGGTGGCGGCTCTTGCCAAATCTATTTCATGACTCTGAACAAACCAGGACTCACTAATTGGTAATCAGAACAATTTTCCATTTAAGTAATAATTATTTATGTGATTTTTCCATTCGAACACCTCGTCTTCTCCCCCAAATTATTTTTTTCTGGCCTTTTTCATCCGCCCCCCCCCCCCAAAATCTCCAATACTTTCCGCAACTGTATTTGAACAATCCAGGATTTCAATTAGTCGCCTCCAATTACTACTAAATTTAAAAAAAAATTTCATCCCAGTCAAAAAACAATGTTCTATGTACCTTCTCAACAGAAAAAATAAGATAAAAACTTGCTCACTTTGTGATTAAATCGCTTTCTAGGCATTTCATGTACACTTTTAACAAAACCTGCACCCCCAAACCCCTCCGAAAGTGCTCATATTCTATATTTTTCTTCACACCGATATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATAAGTTTCTGCTTATTTTCTCTC</pcr_primer_p1>
		<pcr_primer_p2>CATGAAATAGATTTGGCAAGA</pcr_primer_p2>
		<pcr_amplicon_size>322</pcr_amplicon_size>
		<canonical_amplicon>AAATAAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACAAAAATGTTTTATTGCTCTTCAAAATTCAATTTTTCAGGTGTTCTTCTCCTCTGCAAAAGGTGGCGGCTCTTGCCAAATCTATTTCATG</canonical_amplicon>
		<polymorphic_amplicon>AAATAAGTTTCTGCTTATTTTCTCTCAATTTCTTGCTTTTTTTTGTTATTTTTCACGAAAATGCATTGGAATCTAGTTAGAAACGTAAAGAAATCTCTAATAACAAACACAAAATTGAAGGAATCAGGCAAAAATTGACCACTTTACGAGTTTTTCCCGATTTTTTACAAATTCGCGATATATAATTTTAAATGAAATATTATTTAAAAAAACTAAAAAGTTATTTCCCGAACAAAAATRTTTTATTGCTCTTCAAAATTCAATTTTTCAGGTGTTCTTCTCCTCTGCAAAAGGTGGCGGCTCTTGCCAAATCTATTTCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33141</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>70712</contig_pos>
        <strand>+</strand>
        <context>TTTTTCAGAC[A/G]TTTTCARCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGAC</left_flank>
        <right_flank>TTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTGCAGGGTGGAAATTATCATAATTTAGTCATCAAATTATGTTATGAAAATTTTGCCAGAATATAAGGAGGATGGAAACAAGTATTGGCACAGGTTTTCCATTCTTTCCGTATCTCTATCACTATGCAAATATTCCTGAAAGAGGAATTAGATGCTCTCCGTGCTCAGAAGGAGACGAAAGCTTCCACTTCTTCCAACAATCAAGGAATTGGATCGAACATGGCTGCGACTCCAACTGCACCAACTACTCCAACAATCAACACCACACAGGCTGGAAATAAGATTGAAGTGATTTTGAAGAAGAAATAATTGTTTCGCAATAAATAAATAATTGTTCTGTTAGCAATGTGTTGCTTAAATCAGGAGAATTAAATGCAACATTTGCCGCTGGACGTTTTAGAGCAATAATACAGCGAATAAACGTAAAGCTTTTTCTCGGAAGTTCACTGGAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACGTTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTT</canonical>
            <polymorphic>CTTTGCAGGGTGGAAATTATCATAATTTAGTCATCAAATTATGTTATGAAAATTTTGCCAGAATATAAGGAGGATGGAAACAAGTATTGGCACAGGTTTTCCATTCTTTCCGTATCTCTATCACTATGCAAATATTCCTGAAAGAGGAATTAGATGCTCTCCGTGCTCAGAAGGAGACGAAAGCTTCCACTTCTTCCAACAATCAAGGAATTGGATCGAACATGGCTGCGACTCCAACTGCACCAACTACTCCAACAATCAACACCACACAGGCTGGAAATAAGATTGAAGTGATTTTGAAGAAGAAATAATTGTTTCGCAATAAATAAATAATTGTTCTGTTAGCAATGTGTTGCTTAAATCAGGAGAATTAAATGCAACATTTGCCGCTGGACGTTTTAGAGCAATAATACAGCGAATAAACGTAAAGCTTTTTCTCGGAAGTTCACTGGAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACRTTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>502 394 75 29</canonical_bands>
                <polymorphic_bands>577 394 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGTTCTGTTAGCAATGTGTT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTTGGGACCATACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>AATTGTTCTGTTAGCAATGTGTTGCTTAAATCAGGAGAATTAAATGCAACATTTGCCGCTGGACGTTTTAGAGCAATAATACAGCGAATAAACGTAAAGCTTTTTCTCGGAAGTTCACTGGAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACGTTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAG</canonical_amplicon>
		<polymorphic_amplicon>AATTGTTCTGTTAGCAATGTGTTGCTTAAATCAGGAGAATTAAATGCAACATTTGCCGCTGGACGTTTTAGAGCAATAATACAGCGAATAAACGTAAAGCTTTTTCTCGGAAGTTCACTGGAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACRTTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33142</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>70719</contig_pos>
        <strand>+</strand>
        <context>GACRTTTTCA[A/G]CTGTAGATGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACGTTTTCA</left_flank>
        <right_flank>CTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGTGGAAATTATCATAATTTAGTCATCAAATTATGTTATGAAAATTTTGCCAGAATATAAGGAGGATGGAAACAAGTATTGGCACAGGTTTTCCATTCTTTCCGTATCTCTATCACTATGCAAATATTCCTGAAAGAGGAATTAGATGCTCTCCGTGCTCAGAAGGAGACGAAAGCTTCCACTTCTTCCAACAATCAAGGAATTGGATCGAACATGGCTGCGACTCCAACTGCACCAACTACTCCAACAATCAACACCACACAGGCTGGAAATAAGATTGAAGTGATTTTGAAGAAGAAATAATTGTTTCGCAATAAATAAATAATTGTTCTGTTAGCAATGTGTTGCTTAAATCAGGAGAATTAAATGCAACATTTGCCGCTGGACGTTTTAGAGCAATAATACAGCGAATAAACGTAAAGCTTTTTCTCGGAAGTTCACTGGAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACGTTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATT</canonical>
            <polymorphic>GGGTGGAAATTATCATAATTTAGTCATCAAATTATGTTATGAAAATTTTGCCAGAATATAAGGAGGATGGAAACAAGTATTGGCACAGGTTTTCCATTCTTTCCGTATCTCTATCACTATGCAAATATTCCTGAAAGAGGAATTAGATGCTCTCCGTGCTCAGAAGGAGACGAAAGCTTCCACTTCTTCCAACAATCAAGGAATTGGATCGAACATGGCTGCGACTCCAACTGCACCAACTACTCCAACAATCAACACCACACAGGCTGGAAATAAGATTGAAGTGATTTTGAAGAAGAAATAATTGTTTCGCAATAAATAAATAATTGTTCTGTTAGCAATGTGTTGCTTAAATCAGGAGAATTAAATGCAACATTTGCCGCTGGACGTTTTAGAGCAATAATACAGCGAATAAACGTAAAGCTTTTTCTCGGAAGTTCACTGGAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACGTTTTCARCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>247 176 155 116 104 70 55 53 24</canonical_bands>
                <polymorphic_bands>247 179 176 116 104 70 55 53</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>176 157 120 116 104 70 55 53 48 42 35 24</canonical_bands>
                <polymorphic_bands>176 157 144 116 104 70 55 53 48 42 35</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>382 341 159 94 24</canonical_bands>
                <polymorphic_bands>382 365 159 94</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>476 341 159 24</canonical_bands>
                <polymorphic_bands>476 365 159</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGTTCTGTTAGCAATGTGTT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTTGGGACCATACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>AATTGTTCTGTTAGCAATGTGTTGCTTAAATCAGGAGAATTAAATGCAACATTTGCCGCTGGACGTTTTAGAGCAATAATACAGCGAATAAACGTAAAGCTTTTTCTCGGAAGTTCACTGGAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACGTTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAG</canonical_amplicon>
		<polymorphic_amplicon>AATTGTTCTGTTAGCAATGTGTTGCTTAAATCAGGAGAATTAAATGCAACATTTGCCGCTGGACGTTTTAGAGCAATAATACAGCGAATAAACGTAAAGCTTTTTCTCGGAAGTTCACTGGAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACGTTTTCARCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33143</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>70786</contig_pos>
        <strand>+</strand>
        <context>AAGCAATTTA[C/T]CAATTATGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTA</left_flank>
        <right_flank>CAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAAACAAGTATTGGCACAGGTTTTCCATTCTTTCCGTATCTCTATCACTATGCAAATATTCCTGAAAGAGGAATTAGATGCTCTCCGTGCTCAGAAGGAGACGAAAGCTTCCACTTCTTCCAACAATCAAGGAATTGGATCGAACATGGCTGCGACTCCAACTGCACCAACTACTCCAACAATCAACACCACACAGGCTGGAAATAAGATTGAAGTGATTTTGAAGAAGAAATAATTGTTTCGCAATAAATAAATAATTGTTCTGTTAGCAATGTGTTGCTTAAATCAGGAGAATTAAATGCAACATTTGCCGCTGGACGTTTTAGAGCAATAATACAGCGAATAAACGTAAAGCTTTTTCTCGGAAGTTCACTGGAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACGTTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAATGACAACGTGCAGAA</canonical>
            <polymorphic>TGGAAACAAGTATTGGCACAGGTTTTCCATTCTTTCCGTATCTCTATCACTATGCAAATATTCCTGAAAGAGGAATTAGATGCTCTCCGTGCTCAGAAGGAGACGAAAGCTTCCACTTCTTCCAACAATCAAGGAATTGGATCGAACATGGCTGCGACTCCAACTGCACCAACTACTCCAACAATCAACACCACACAGGCTGGAAATAAGATTGAAGTGATTTTGAAGAAGAAATAATTGTTTCGCAATAAATAAATAATTGTTCTGTTAGCAATGTGTTGCTTAAATCAGGAGAATTAAATGCAACATTTGCCGCTGGACGTTTTAGAGCAATAATACAGCGAATAAACGTAAAGCTTTTTCTCGGAAGTTCACTGGAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACGTTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTAYCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAATGACAACGTGCAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCAGCTGATGTTTTTCAGA</pcr_primer_p1>
		<pcr_primer_p2>GCTGAAGCAAGAAAAACAAA</pcr_primer_p2>
		<pcr_amplicon_size>372</pcr_amplicon_size>
		<canonical_amplicon>GTTCAGCTGATGTTTTTCAGACGTTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGC</canonical_amplicon>
		<polymorphic_amplicon>GTTCAGCTGATGTTTTTCAGACGTTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTAYCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33144</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>70804</contig_pos>
        <strand>+</strand>
        <context>GGTCTCAACG[A/T]TCCAACGAMG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCCAAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACG</left_flank>
        <right_flank>TCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGGTTTTCCATTCTTTCCGTATCTCTATCACTATGCAAATATTCCTGAAAGAGGAATTAGATGCTCTCCGTGCTCAGAAGGAGACGAAAGCTTCCACTTCTTCCAACAATCAAGGAATTGGATCGAACATGGCTGCGACTCCAACTGCACCAACTACTCCAACAATCAACACCACACAGGCTGGAAATAAGATTGAAGTGATTTTGAAGAAGAAATAATTGTTTCGCAATAAATAAATAATTGTTCTGTTAGCAATGTGTTGCTTAAATCAGGAGAATTAAATGCAACATTTGCCGCTGGACGTTTTAGAGCAATAATACAGCGAATAAACGTAAAGCTTTTTCTCGGAAGTTCACTGGAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACGTTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAATGACAACGTGCAGAAGAAATTTTATTTGAAACT</canonical>
            <polymorphic>CAGGTTTTCCATTCTTTCCGTATCTCTATCACTATGCAAATATTCCTGAAAGAGGAATTAGATGCTCTCCGTGCTCAGAAGGAGACGAAAGCTTCCACTTCTTCCAACAATCAAGGAATTGGATCGAACATGGCTGCGACTCCAACTGCACCAACTACTCCAACAATCAACACCACACAGGCTGGAAATAAGATTGAAGTGATTTTGAAGAAGAAATAATTGTTTCGCAATAAATAAATAATTGTTCTGTTAGCAATGTGTTGCTTAAATCAGGAGAATTAAATGCAACATTTGCCGCTGGACGTTTTAGAGCAATAATACAGCGAATAAACGTAAAGCTTTTTCTCGGAAGTTCACTGGAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACGTTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGWTCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAATGACAACGTGCAGAAGAAATTTTATTTGAAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>502 377 121</canonical_bands>
                <polymorphic_bands>879 121</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCTTCCAAAAAGTATGGTC</pcr_primer_p1>
		<pcr_primer_p2>AAGCAAGAAAAACAAAATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>CCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTT</canonical_amplicon>
		<polymorphic_amplicon>CCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGWTCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33145</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>70813</contig_pos>
        <strand>+</strand>
        <context>GWTCCAACGA[A/C]GGTTCCTAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGA</left_flank>
        <right_flank>GGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTC</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTCTTTCCGTATCTCTATCACTATGCAAATATTCCTGAAAGAGGAATTAGATGCTCTCCGTGCTCAGAAGGAGACGAAAGCTTCCACTTCTTCCAACAATCAAGGAATTGGATCGAACATGGCTGCGACTCCAACTGCACCAACTACTCCAACAATCAACACCACACAGGCTGGAAATAAGATTGAAGTGATTTTGAAGAAGAAATAATTGTTTCGCAATAAATAAATAATTGTTCTGTTAGCAATGTGTTGCTTAAATCAGGAGAATTAAATGCAACATTTGCCGCTGGACGTTTTAGAGCAATAATACAGCGAATAAACGTAAAGCTTTTTCTCGGAAGTTCACTGGAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACGTTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAATGACAACGTGCAGAAGAAATTTTATTTGAAACTTGGCACTGA</canonical>
            <polymorphic>CATTCTTTCCGTATCTCTATCACTATGCAAATATTCCTGAAAGAGGAATTAGATGCTCTCCGTGCTCAGAAGGAGACGAAAGCTTCCACTTCTTCCAACAATCAAGGAATTGGATCGAACATGGCTGCGACTCCAACTGCACCAACTACTCCAACAATCAACACCACACAGGCTGGAAATAAGATTGAAGTGATTTTGAAGAAGAAATAATTGTTTCGCAATAAATAAATAATTGTTCTGTTAGCAATGTGTTGCTTAAATCAGGAGAATTAAATGCAACATTTGCCGCTGGACGTTTTAGAGCAATAATACAGCGAATAAACGTAAAGCTTTTTCTCGGAAGTTCACTGGAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACGTTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGAMGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAATGACAACGTGCAGAAGAAATTTTATTTGAAACTTGGCACTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 281 189 29</canonical_bands>
                <polymorphic_bands>690 281 29</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGTATGGTCCCAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>AAGCAAGAAAAACAAAATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGAMGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33146</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>70972</contig_pos>
        <strand></strand>
        <context>tatcatgcat[C/T]ggtaaagaga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCAT</left_flank>
        <right_flank>GGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATAC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACACCACACAGGCTGGAAATAAGATTGAAGTGATTTTGAAGAAGAAATAATTGTTTCGCAATAAATAAATAATTGTTCTGTTAGCAATGTGTTGCTTAAATCAGGAGAATTAAATGCAACATTTGCCGCTGGACGTTTTAGAGCAATAATACAGCGAATAAACGTAAAGCTTTTTCTCGGAAGTTCACTGGAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACGTTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAATGACAACGTGCAGAAGAAATTTTATTTGAAACTTGGCACTGAGCCAAAATTGGTCGCGTATCGTCGTCATTGCATTTCGCTGCGTAGCGACTCAACAAGACTCGTATGACCTCTTCCCCTCTTCTCCCCAATGTGGAGACCCTGTGTTGCAGACCACCGCTGCCCTCTCAAACTTATCCCTTCGACTTTCTTTAGCTGTTT</canonical>
            <polymorphic>AACACCACACAGGCTGGAAATAAGATTGAAGTGATTTTGAAGAAGAAATAATTGTTTCGCAATAAATAAATAATTGTTCTGTTAGCAATGTGTTGCTTAAATCAGGAGAATTAAATGCAACATTTGCCGCTGGACGTTTTAGAGCAATAATACAGCGAATAAACGTAAAGCTTTTTCTCGGAAGTTCACTGGAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACGTTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATYGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAATGACAACGTGCAGAAGAAATTTTATTTGAAACTTGGCACTGAGCCAAAATTGGTCGCGTATCGTCGTCATTGCATTTCGCTGCGTAGCGACTCAACAAGACTCGTATGACCTCTTCCCCTCTTCTCCCCAATGTGGAGACCCTGTGTTGCAGACCACCGCTGCCCTCTCAAACTTATCCCTTCGACTTTCTTTAGCTGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGTATGGTCCCAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>AAGCAAGAAAAACAAAATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATYGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33147</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>70993</contig_pos>
        <strand></strand>
        <context>taattgagct[T/C]aaaattgaca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCT</left_flank>
        <right_flank>AAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGATTGAAGTGATTTTGAAGAAGAAATAATTGTTTCGCAATAAATAAATAATTGTTCTGTTAGCAATGTGTTGCTTAAATCAGGAGAATTAAATGCAACATTTGCCGCTGGACGTTTTAGAGCAATAATACAGCGAATAAACGTAAAGCTTTTTCTCGGAAGTTCACTGGAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACGTTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAATGACAACGTGCAGAAGAAATTTTATTTGAAACTTGGCACTGAGCCAAAATTGGTCGCGTATCGTCGTCATTGCATTTCGCTGCGTAGCGACTCAACAAGACTCGTATGACCTCTTCCCCTCTTCTCCCCAATGTGGAGACCCTGTGTTGCAGACCACCGCTGCCCTCTCAAACTTATCCCTTCGACTTTCTTTAGCTGTTTTTCTCTGACTTTTTTTTCCAG</canonical>
            <polymorphic>AAGATTGAAGTGATTTTGAAGAAGAAATAATTGTTTCGCAATAAATAAATAATTGTTCTGTTAGCAATGTGTTGCTTAAATCAGGAGAATTAAATGCAACATTTGCCGCTGGACGTTTTAGAGCAATAATACAGCGAATAAACGTAAAGCTTTTTCTCGGAAGTTCACTGGAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACGTTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTYAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAATGACAACGTGCAGAAGAAATTTTATTTGAAACTTGGCACTGAGCCAAAATTGGTCGCGTATCGTCGTCATTGCATTTCGCTGCGTAGCGACTCAACAAGACTCGTATGACCTCTTCCCCTCTTCTCCCCAATGTGGAGACCCTGTGTTGCAGACCACCGCTGCCCTCTCAAACTTATCCCTTCGACTTTCTTTAGCTGTTTTTCTCTGACTTTTTTTTCCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>323 178 135 110 96 76 55 14 13</canonical_bands>
                <polymorphic_bands>323 313 110 96 76 55 14 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGTATGGTCCCAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>AAGCAAGAAAAACAAAATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTYAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33148</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>71011</contig_pos>
        <strand></strand>
        <context>acagtgtgag[C/A]aattctaata</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAG</left_flank>
        <right_flank>AATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAGAAATAATTGTTTCGCAATAAATAAATAATTGTTCTGTTAGCAATGTGTTGCTTAAATCAGGAGAATTAAATGCAACATTTGCCGCTGGACGTTTTAGAGCAATAATACAGCGAATAAACGTAAAGCTTTTTCTCGGAAGTTCACTGGAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACGTTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAATGACAACGTGCAGAAGAAATTTTATTTGAAACTTGGCACTGAGCCAAAATTGGTCGCGTATCGTCGTCATTGCATTTCGCTGCGTAGCGACTCAACAAGACTCGTATGACCTCTTCCCCTCTTCTCCCCAATGTGGAGACCCTGTGTTGCAGACCACCGCTGCCCTCTCAAACTTATCCCTTCGACTTTCTTTAGCTGTTTTTCTCTGACTTTTTTTTCCAGTGAAATGACCGGCGGTCC</canonical>
            <polymorphic>AAGAAGAAATAATTGTTTCGCAATAAATAAATAATTGTTCTGTTAGCAATGTGTTGCTTAAATCAGGAGAATTAAATGCAACATTTGCCGCTGGACGTTTTAGAGCAATAATACAGCGAATAAACGTAAAGCTTTTTCTCGGAAGTTCACTGGAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACGTTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGMAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAATGACAACGTGCAGAAGAAATTTTATTTGAAACTTGGCACTGAGCCAAAATTGGTCGCGTATCGTCGTCATTGCATTTCGCTGCGTAGCGACTCAACAAGACTCGTATGACCTCTTCCCCTCTTCTCCCCAATGTGGAGACCCTGTGTTGCAGACCACCGCTGCCCTCTCAAACTTATCCCTTCGACTTTCTTTAGCTGTTTTTCTCTGACTTTTTTTTCCAGTGAAATGACCGGCGGTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGTATGGTCCCAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>AGCTGAAGCAAGAAAAACAA</pcr_primer_p2>
		<pcr_amplicon_size>305</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGCT</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGMAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33149</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>71101</contig_pos>
        <strand>+</strand>
        <context>ATTCTTTCCG[A/G]AGAGAACCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCG</left_flank>
        <right_flank>AGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGGACGTTTTAGAGCAATAATACAGCGAATAAACGTAAAGCTTTTTCTCGGAAGTTCACTGGAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACGTTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAATGACAACGTGCAGAAGAAATTTTATTTGAAACTTGGCACTGAGCCAAAATTGGTCGCGTATCGTCGTCATTGCATTTCGCTGCGTAGCGACTCAACAAGACTCGTATGACCTCTTCCCCTCTTCTCCCCAATGTGGAGACCCTGTGTTGCAGACCACCGCTGCCCTCTCAAACTTATCCCTTCGACTTTCTTTAGCTGTTTTTCTCTGACTTTTTTTTCCAGTGAAATGACCGGCGGTCCCACCTTGAGACCATTCTTCCTGGAAGAAAACCATCACGGTTTGAAAATTTTTCTTCAACTGGAAAAAAAGAACAGATTTCATTGGAATCC</canonical>
            <polymorphic>CTGGACGTTTTAGAGCAATAATACAGCGAATAAACGTAAAGCTTTTTCTCGGAAGTTCACTGGAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACGTTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGRAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAATGACAACGTGCAGAAGAAATTTTATTTGAAACTTGGCACTGAGCCAAAATTGGTCGCGTATCGTCGTCATTGCATTTCGCTGCGTAGCGACTCAACAAGACTCGTATGACCTCTTCCCCTCTTCTCCCCAATGTGGAGACCCTGTGTTGCAGACCACCGCTGCCCTCTCAAACTTATCCCTTCGACTTTCTTTAGCTGTTTTTCTCTGACTTTTTTTTCCAGTGAAATGACCGGCGGTCCCACCTTGAGACCATTCTTCCTGGAAGAAAACCATCACGGTTTGAAAATTTTTCTTCAACTGGAAAAAAAGAACAGATTTCATTGGAATCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>391 327 123 56 52 51</canonical_bands>
                <polymorphic_bands>443 327 123 56 51</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTTGTTTTTCTTGCTTCAG</pcr_primer_p1>
		<pcr_primer_p2>TTTGAGATGAAAGTGAAAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>AATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAA</canonical_amplicon>
		<polymorphic_amplicon>AATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGRAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33150</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>71133</contig_pos>
        <strand>+</strand>
        <context>ATTCATTGCT[A/C]AAAAAGAGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCT</left_flank>
        <right_flank>AAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGTAAAGCTTTTTCTCGGAAGTTCACTGGAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACGTTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAATGACAACGTGCAGAAGAAATTTTATTTGAAACTTGGCACTGAGCCAAAATTGGTCGCGTATCGTCGTCATTGCATTTCGCTGCGTAGCGACTCAACAAGACTCGTATGACCTCTTCCCCTCTTCTCCCCAATGTGGAGACCCTGTGTTGCAGACCACCGCTGCCCTCTCAAACTTATCCCTTCGACTTTCTTTAGCTGTTTTTCTCTGACTTTTTTTTCCAGTGAAATGACCGGCGGTCCCACCTTGAGACCATTCTTCCTGGAAGAAAACCATCACGGTTTGAAAATTTTTCTTCAACTGGAAAAAAAGAACAGATTTCATTGGAATCCGTTCACTCGAGATTGATTCACTCAGACAACTG</canonical>
            <polymorphic>AACGTAAAGCTTTTTCTCGGAAGTTCACTGGAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACGTTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTMAAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAATGACAACGTGCAGAAGAAATTTTATTTGAAACTTGGCACTGAGCCAAAATTGGTCGCGTATCGTCGTCATTGCATTTCGCTGCGTAGCGACTCAACAAGACTCGTATGACCTCTTCCCCTCTTCTCCCCAATGTGGAGACCCTGTGTTGCAGACCACCGCTGCCCTCTCAAACTTATCCCTTCGACTTTCTTTAGCTGTTTTTCTCTGACTTTTTTTTCCAGTGAAATGACCGGCGGTCCCACCTTGAGACCATTCTTCCTGGAAGAAAACCATCACGGTTTGAAAATTTTTCTTCAACTGGAAAAAAAGAACAGATTTCATTGGAATCCGTTCACTCGAGATTGATTCACTCAGACAACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTGTTTTTCTTGCTTCAG</pcr_primer_p1>
		<pcr_primer_p2>TTTGAGATGAAAGTGAAAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>AATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAA</canonical_amplicon>
		<polymorphic_amplicon>AATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTMAAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33151</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>71152</contig_pos>
        <strand></strand>
        <context>CAGACCATCG[G/A]AATCCRTTTR</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCG</left_flank>
        <right_flank>AATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGTTCACTGGAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACGTTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAATGACAACGTGCAGAAGAAATTTTATTTGAAACTTGGCACTGAGCCAAAATTGGTCGCGTATCGTCGTCATTGCATTTCGCTGCGTAGCGACTCAACAAGACTCGTATGACCTCTTCCCCTCTTCTCCCCAATGTGGAGACCCTGTGTTGCAGACCACCGCTGCCCTCTCAAACTTATCCCTTCGACTTTCTTTAGCTGTTTTTCTCTGACTTTTTTTTCCAGTGAAATGACCGGCGGTCCCACCTTGAGACCATTCTTCCTGGAAGAAAACCATCACGGTTTGAAAATTTTTCTTCAACTGGAAAAAAAGAACAGATTTCATTGGAATCCGTTCACTCGAGATTGATTCACTCAGACAACTGTGAATCCCAAAATTTTCCA</canonical>
            <polymorphic>GAAGTTCACTGGAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACGTTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGRAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAATGACAACGTGCAGAAGAAATTTTATTTGAAACTTGGCACTGAGCCAAAATTGGTCGCGTATCGTCGTCATTGCATTTCGCTGCGTAGCGACTCAACAAGACTCGTATGACCTCTTCCCCTCTTCTCCCCAATGTGGAGACCCTGTGTTGCAGACCACCGCTGCCCTCTCAAACTTATCCCTTCGACTTTCTTTAGCTGTTTTTCTCTGACTTTTTTTTCCAGTGAAATGACCGGCGGTCCCACCTTGAGACCATTCTTCCTGGAAGAAAACCATCACGGTTTGAAAATTTTTCTTCAACTGGAAAAAAAGAACAGATTTCATTGGAATCCGTTCACTCGAGATTGATTCACTCAGACAACTGTGAATCCCAAAATTTTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>422 226 208 48 30 20 19 17 10</canonical_bands>
                <polymorphic_bands>422 238 226 48 20 19 17 10</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>391 327 147 56 52 27</canonical_bands>
                <polymorphic_bands>391 379 147 56 27</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>444 422 48 30 20 19 17</canonical_bands>
                <polymorphic_bands>474 422 48 20 19 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTTGTTTTTCTTGCTTCAG</pcr_primer_p1>
		<pcr_primer_p2>TTTGAGATGAAAGTGAAAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>AATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAA</canonical_amplicon>
		<polymorphic_amplicon>AATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGRAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33152</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>71158</contig_pos>
        <strand>+</strand>
        <context>ATCGRAATCC[A/G]TTTRYTCAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCC</left_flank>
        <right_flank>TTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTGGAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACGTTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAATGACAACGTGCAGAAGAAATTTTATTTGAAACTTGGCACTGAGCCAAAATTGGTCGCGTATCGTCGTCATTGCATTTCGCTGCGTAGCGACTCAACAAGACTCGTATGACCTCTTCCCCTCTTCTCCCCAATGTGGAGACCCTGTGTTGCAGACCACCGCTGCCCTCTCAAACTTATCCCTTCGACTTTCTTTAGCTGTTTTTCTCTGACTTTTTTTTCCAGTGAAATGACCGGCGGTCCCACCTTGAGACCATTCTTCCTGGAAGAAAACCATCACGGTTTGAAAATTTTTCTTCAACTGGAAAAAAAGAACAGATTTCATTGGAATCCGTTCACTCGAGATTGATTCACTCAGACAACTGTGAATCCCAAAATTTTCCATTCGTT</canonical>
            <polymorphic>CACTGGAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACGTTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCRTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAATGACAACGTGCAGAAGAAATTTTATTTGAAACTTGGCACTGAGCCAAAATTGGTCGCGTATCGTCGTCATTGCATTTCGCTGCGTAGCGACTCAACAAGACTCGTATGACCTCTTCCCCTCTTCTCCCCAATGTGGAGACCCTGTGTTGCAGACCACCGCTGCCCTCTCAAACTTATCCCTTCGACTTTCTTTAGCTGTTTTTCTCTGACTTTTTTTTCCAGTGAAATGACCGGCGGTCCCACCTTGAGACCATTCTTCCTGGAAGAAAACCATCACGGTTTGAAAATTTTTCTTCAACTGGAAAAAAAGAACAGATTTCATTGGAATCCGTTCACTCGAGATTGATTCACTCAGACAACTGTGAATCCCAAAATTTTCCATTCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTGTTTTTCTTGCTTCAG</pcr_primer_p1>
		<pcr_primer_p2>TTTGAGATGAAAGTGAAAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>AATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAA</canonical_amplicon>
		<polymorphic_amplicon>AATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCRTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33153</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>71162</contig_pos>
        <strand>+</strand>
        <context>RAATCCRTTT[A/G]YTCAAAGTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTT</left_flank>
        <right_flank>CTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACGTTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAATGACAACGTGCAGAAGAAATTTTATTTGAAACTTGGCACTGAGCCAAAATTGGTCGCGTATCGTCGTCATTGCATTTCGCTGCGTAGCGACTCAACAAGACTCGTATGACCTCTTCCCCTCTTCTCCCCAATGTGGAGACCCTGTGTTGCAGACCACCGCTGCCCTCTCAAACTTATCCCTTCGACTTTCTTTAGCTGTTTTTCTCTGACTTTTTTTTCCAGTGAAATGACCGGCGGTCCCACCTTGAGACCATTCTTCCTGGAAGAAAACCATCACGGTTTGAAAATTTTTCTTCAACTGGAAAAAAAGAACAGATTTCATTGGAATCCGTTCACTCGAGATTGATTCACTCAGACAACTGTGAATCCCAAAATTTTCCATTCGTTTTTT</canonical>
            <polymorphic>GGAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACGTTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTRCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAATGACAACGTGCAGAAGAAATTTTATTTGAAACTTGGCACTGAGCCAAAATTGGTCGCGTATCGTCGTCATTGCATTTCGCTGCGTAGCGACTCAACAAGACTCGTATGACCTCTTCCCCTCTTCTCCCCAATGTGGAGACCCTGTGTTGCAGACCACCGCTGCCCTCTCAAACTTATCCCTTCGACTTTCTTTAGCTGTTTTTCTCTGACTTTTTTTTCCAGTGAAATGACCGGCGGTCCCACCTTGAGACCATTCTTCCTGGAAGAAAACCATCACGGTTTGAAAATTTTTCTTCAACTGGAAAAAAAGAACAGATTTCATTGGAATCCGTTCACTCGAGATTGATTCACTCAGACAACTGTGAATCCCAAAATTTTCCATTCGTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTGTTTTTCTTGCTTCAG</pcr_primer_p1>
		<pcr_primer_p2>TTTGAGATGAAAGTGAAAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>AATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAA</canonical_amplicon>
		<polymorphic_amplicon>AATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTRCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33154</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>71163</contig_pos>
        <strand>+</strand>
        <context>AATCCRTTTR[C/T]TCAAAGTTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTG</left_flank>
        <right_flank>TCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACGTTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAATGACAACGTGCAGAAGAAATTTTATTTGAAACTTGGCACTGAGCCAAAATTGGTCGCGTATCGTCGTCATTGCATTTCGCTGCGTAGCGACTCAACAAGACTCGTATGACCTCTTCCCCTCTTCTCCCCAATGTGGAGACCCTGTGTTGCAGACCACCGCTGCCCTCTCAAACTTATCCCTTCGACTTTCTTTAGCTGTTTTTCTCTGACTTTTTTTTCCAGTGAAATGACCGGCGGTCCCACCTTGAGACCATTCTTCCTGGAAGAAAACCATCACGGTTTGAAAATTTTTCTTCAACTGGAAAAAAAGAACAGATTTCATTGGAATCCGTTCACTCGAGATTGATTCACTCAGACAACTGTGAATCCCAAAATTTTCCATTCGTTTTTTT</canonical>
            <polymorphic>GAAAGCGACATGTTGTTAAATGAGTGGTTCAGCTGATGTTTTTCAGACGTTTTCAGCTGTAGATGAATTGTTAATATTATCATGGGTCCCTTCCAAAAAGTATGGTCCCAAAAAGCAATTTACCAATTATGGTCTCAACGATCCAACGACGGTTCCTAATTACAATGATATAAGGGCCTCTTAACTTCCAACTTTAAGTCTATTTATCTAGCTTCTTGTCGAAGTTACAGAATAGTTGTCAACTATATAATTGTTCAGCATACTATCACCAATATTTTATCAGTGCACAGATTTTTTATATCATGCATCGGTAAAGAGATAATTGAGCTTAAAATTGACAGTGTGAGCAATTCTAATACCTGTTTCACGGTATTCAATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTGYTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAATGACAACGTGCAGAAGAAATTTTATTTGAAACTTGGCACTGAGCCAAAATTGGTCGCGTATCGTCGTCATTGCATTTCGCTGCGTAGCGACTCAACAAGACTCGTATGACCTCTTCCCCTCTTCTCCCCAATGTGGAGACCCTGTGTTGCAGACCACCGCTGCCCTCTCAAACTTATCCCTTCGACTTTCTTTAGCTGTTTTTCTCTGACTTTTTTTTCCAGTGAAATGACCGGCGGTCCCACCTTGAGACCATTCTTCCTGGAAGAAAACCATCACGGTTTGAAAATTTTTCTTCAACTGGAAAAAAAGAACAGATTTCATTGGAATCCGTTCACTCGAGATTGATTCACTCAGACAACTGTGAATCCCAAAATTTTCCATTCGTTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTGTTTTTCTTGCTTCAG</pcr_primer_p1>
		<pcr_primer_p2>TTTGAGATGAAAGTGAAAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>AATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTGCTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAA</canonical_amplicon>
		<polymorphic_amplicon>AATTTTGTTTTTCTTGCTTCAGCTGCCAATAATGCGATTCGAAACTGGTAGTATTCTTTCCGAAGAGAACCATCGAGCTTCAAGATTCATTGCTAAAAAAGAGCAGACCATCGGAATCCGTTTGYTCAAAGTTAATCTACAAGAATTGATTTTCTTCCTTCAAACCCTGAATTTTGAAATTCATCCTTATTTTTTCTTCCATTGCAATTCCAGTTTTTCACTTTCATCTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33155</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>115728</contig_pos>
        <strand>+</strand>
        <context>TTGCAAGATT[A/T]CCGCTTTAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACACATCGAGAAACCTTAAAAAGCCAAAGGACCAAAACAATTGCAAGATT</left_flank>
        <right_flank>CCGCTTTAGTACTCAATTTCTAGCTAAAAATTGAATGTGTCGGAATATCA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAAAGGAGACAAAACCAATTTGGAACTTAATTCTGTGGAAAAAGGGAAAACGCTGCTTATAAACTCCTCCGCCAAAGGGTAGGCGGATCGAAAGAAAGTGGGCGAGAAGTGTCACATTATATGGGATCGAGGAATCGGATGGCTTTAGCAAAAAATTTTTGTTCTATTTTCACTCCGTAATGGTATGCAAAGTTCTCGAAACTGCTTTTGTTCTAACTGGAAAATGTAAATTTTTAGTGGGTTTACTACGGTATCCTTGAGTTGAGGAAGTAAAAAAGACTACTACGCACAGAGAGGCTCTGGAGCTTAGGAAAATTACGTTCCAAGTTAAATTAACAAAGTTTCATATCTTTTGAAGCCATAATCTGGGAAAATGAAAGAAAAATATAATTTTTTCAACAACAAAACAGCTGGAATTCTTGTGCATAATTGCTTTTTGAGTTCTAGCACACATCGAGAAACCTTAAAAAGCCAAAGGACCAAAACAATTGCAAGATTACCGCTTTAGTACTCAATTTCTAGCTAAAAATTGAATGTGTCGGAATATCAGGCTACCTATGAAATCCCTATTTTTGTTTGAAACCTTTGAGAAATTCAACACTGTAGCTCTAATTTCTGACATTACCTCGTGAAAACTGAGTTTCTGTCCTTTTAAGGCTACTGCAGTTCTAAGAAAACCCACAAAAATTTATTTCTGTCTACTGTAGAGCTTTGAAAATTTGAATCTGAATGATCACCTCCGCTGAGAGAAGAAGACTCTTCCCTAATTTTCCAAAAATTTCAATTTTTAGGACTTTTTCAGCTGAAAATTCAATTTGTTTTGTTCCAATCTCTGGAACCTGTTTGATAAGAAACTCTAGAAACCTTGATATATTAACGAAAACCGCGGAAAAAGCACATAAAATTTGATTTTTCGTCCTAAATCTTGATTTCCTATGCTTAATGACCCAGCCCAATGAGTATCATGCAGAAAAATGTGGCTAGCACAATTGGAGCAAT</canonical>
            <polymorphic>CTAAAGGAGACAAAACCAATTTGGAACTTAATTCTGTGGAAAAAGGGAAAACGCTGCTTATAAACTCCTCCGCCAAAGGGTAGGCGGATCGAAAGAAAGTGGGCGAGAAGTGTCACATTATATGGGATCGAGGAATCGGATGGCTTTAGCAAAAAATTTTTGTTCTATTTTCACTCCGTAATGGTATGCAAAGTTCTCGAAACTGCTTTTGTTCTAACTGGAAAATGTAAATTTTTAGTGGGTTTACTACGGTATCCTTGAGTTGAGGAAGTAAAAAAGACTACTACGCACAGAGAGGCTCTGGAGCTTAGGAAAATTACGTTCCAAGTTAAATTAACAAAGTTTCATATCTTTTGAAGCCATAATCTGGGAAAATGAAAGAAAAATATAATTTTTTCAACAACAAAACAGCTGGAATTCTTGTGCATAATTGCTTTTTGAGTTCTAGCACACATCGAGAAACCTTAAAAAGCCAAAGGACCAAAACAATTGCAAGATTWCCGCTTTAGTACTCAATTTCTAGCTAAAAATTGAATGTGTCGGAATATCAGGCTACCTATGAAATCCCTATTTTTGTTTGAAACCTTTGAGAAATTCAACACTGTAGCTCTAATTTCTGACATTACCTCGTGAAAACTGAGTTTCTGTCCTTTTAAGGCTACTGCAGTTCTAAGAAAACCCACAAAAATTTATTTCTGTCTACTGTAGAGCTTTGAAAATTTGAATCTGAATGATCACCTCCGCTGAGAGAAGAAGACTCTTCCCTAATTTTCCAAAAATTTCAATTTTTAGGACTTTTTCAGCTGAAAATTCAATTTGTTTTGTTCCAATCTCTGGAACCTGTTTGATAAGAAACTCTAGAAACCTTGATATATTAACGAAAACCGCGGAAAAAGCACATAAAATTTGATTTTTCGTCCTAAATCTTGATTTCCTATGCTTAATGACCCAGCCCAATGAGTATCATGCAGAAAAATGTGGCTAGCACAATTGGAGCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATATCTTTTGAAGCCATAATC</pcr_primer_p1>
		<pcr_primer_p2>CTCAAAGGTTTCAAACAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCATATCTTTTGAAGCCATAATCTGGGAAAATGAAAGAAAAATATAATTTTTTCAACAACAAAACAGCTGGAATTCTTGTGCATAATTGCTTTTTGAGTTCTAGCACACATCGAGAAACCTTAAAAAGCCAAAGGACCAAAACAATTGCAAGATTACCGCTTTAGTACTCAATTTCTAGCTAAAAATTGAATGTGTCGGAATATCAGGCTACCTATGAAATCCCTATTTTTGTTTGAAACCTTTGAG</canonical_amplicon>
		<polymorphic_amplicon>TCATATCTTTTGAAGCCATAATCTGGGAAAATGAAAGAAAAATATAATTTTTTCAACAACAAAACAGCTGGAATTCTTGTGCATAATTGCTTTTTGAGTTCTAGCACACATCGAGAAACCTTAAAAAGCCAAAGGACCAAAACAATTGCAAGATTWCCGCTTTAGTACTCAATTTCTAGCTAAAAATTGAATGTGTCGGAATATCAGGCTACCTATGAAATCCCTATTTTTGTTTGAAACCTTTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33156</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>116730</contig_pos>
        <strand></strand>
        <context>Caggaggagg[A/G]aagagtgggg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACAACGCTCTTATTGTGTGTGTGTGTGTCGCGGAGCGAACAGGAGGAGG</left_flank>
        <right_flank>AAGAGTGGGGAAGAGGAAGAGACGCAGAGAGAAGGTGAGAGAGAACGAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAAACTTCAAAAACCAGGAAAAAAATTTCTATATAAAATTGGTATTTTCACCTAAAAATCAAAGGTTTTCTATGAAAAACTTTATTTTTCTCATTTTTCATTTAGTTTTAGCCGAGAAGAGTAATTTCGACGCATTACCAGATGGGAAAAATTCTCGATTTTCCACCAAAAATTTAAATTTCCCGCACATTCCTCGCTAAACCCAAATTTTTCACAAAAATACCTGACATTCTTGACGATGCACTGAAATCCACCGAAAAAATGAAGAAAATCCATGAAACGCGAACGAGCGACGAGAAAAAAGAGAACGAGCAACGTCGAAAATCAAAAACAATAACGAATGCGCAAGGACGGCGGGGTGGAAGACGGTTTAGCGGTGGGGCGCACTTCCCGCGTACAGTGAGGAAGGTCGGCCTCGGGGTGAACGCGAGGAAAGAGAAAGGACAATACAACGCTCTTATTGTGTGTGTGTGTGTCGCGGAGCGAACAGGAGGAGGAAAGAGTGGGGAAGAGGAAGAGACGCAGAGAGAAGGTGAGAGAGAACGAGAAGAAGAAAGGCCGTTCGTTGTTGTATTGAGAGAGAGAGAGTGATCGGTTGTTCGGAGAAACGATCCATCACTTTTCTTCCCGAGAGAGTTATATCAGAAAGTTATCAATGATGGAGCGAATTTTCCGGGAATCCAGATGGACGGGAAAGGATACAGATTGCCTAGAATAGTACAGTATCGGTCAATAAGATATACAAAATCATGTTTTTAAATTGGTTTTCTGCCATTTCGACCTTTTTCAGAAGGTTTTCTAGTTTCCGGTAACTTCAAGGACTCTGGTGGGTAAAAAACACATTTTCAGAAAACTTGAGAAGAGAAAAGAATTGAGAAGATCAAGAAAACCATACCCCAGGAATACAAAAAAAGAAGAAATATTTGTCTTCCAGAACTTTCTGTACTTGTCTAGACAGTCCGGAAAGTTTGAAGTATGCGGATTCAAAACGGGGCTAA</canonical>
            <polymorphic>TAAAAACTTCAAAAACCAGGAAAAAAATTTCTATATAAAATTGGTATTTTCACCTAAAAATCAAAGGTTTTCTATGAAAAACTTTATTTTTCTCATTTTTCATTTAGTTTTAGCCGAGAAGAGTAATTTCGACGCATTACCAGATGGGAAAAATTCTCGATTTTCCACCAAAAATTTAAATTTCCCGCACATTCCTCGCTAAACCCAAATTTTTCACAAAAATACCTGACATTCTTGACGATGCACTGAAATCCACCGAAAAAATGAAGAAAATCCATGAAACGCGAACGAGCGACGAGAAAAAAGAGAACGAGCAACGTCGAAAATCAAAAACAATAACGAATGCGCAAGGACGGCGGGGTGGAAGACGGTTTAGCGGTGGGGCGCACTTCCCGCGTACAGTGAGGAAGGTCGGCCTCGGGGTGAACGCGAGGAAAGAGAAAGGACAATACAACGCTCTTATTGTGTGTGTGTGTGTCGCGGAGCGAACAGGAGGAGGRAAGAGTGGGGAAGAGGAAGAGACGCAGAGAGAAGGTGAGAGAGAACGAGAAGAAGAAAGGCCGTTCGTTGTTGTATTGAGAGAGAGAGAGTGATCGGTTGTTCGGAGAAACGATCCATCACTTTTCTTCCCGAGAGAGTTATATCAGAAAGTTATCAATGATGGAGCGAATTTTCCGGGAATCCAGATGGACGGGAAAGGATACAGATTGCCTAGAATAGTACAGTATCGGTCAATAAGATATACAAAATCATGTTTTTAAATTGGTTTTCTGCCATTTCGACCTTTTTCAGAAGGTTTTCTAGTTTCCGGTAACTTCAAGGACTCTGGTGGGTAAAAAACACATTTTCAGAAAACTTGAGAAGAGAAAAGAATTGAGAAGATCAAGAAAACCATACCCCAGGAATACAAAAAAAGAAGAAATATTTGTCTTCCAGAACTTTCTGTACTTGTCTAGACAGTCCGGAAAGTTTGAAGTATGCGGATTCAAAACGGGGCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAAAGAGAAAGGACAATACAA</pcr_primer_p1>
		<pcr_primer_p2>TCCATCATTGATAACTTTCTGAT</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>AGGAAAGAGAAAGGACAATACAACGCTCTTATTGTGTGTGTGTGTGTCGCGGAGCGAACAGGAGGAGGAAAGAGTGGGGAAGAGGAAGAGACGCAGAGAGAAGGTGAGAGAGAACGAGAAGAAGAAAGGCCGTTCGTTGTTGTATTGAGAGAGAGAGAGTGATCGGTTGTTCGGAGAAACGATCCATCACTTTTCTTCCCGAGAGAGTTATATCAGAAAGTTATCAATGATGGA</canonical_amplicon>
		<polymorphic_amplicon>AGGAAAGAGAAAGGACAATACAACGCTCTTATTGTGTGTGTGTGTGTCGCGGAGCGAACAGGAGGAGGRAAGAGTGGGGAAGAGGAAGAGACGCAGAGAGAAGGTGAGAGAGAACGAGAAGAAGAAAGGCCGTTCGTTGTTGTATTGAGAGAGAGAGAGTGATCGGTTGTTCGGAGAAACGATCCATCACTTTTCTTCCCGAGAGAGTTATATCAGAAAGTTATCAATGATGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33157</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>117238</contig_pos>
        <strand>+</strand>
        <context>TAATAACTAC[A/T]TTTTTTCAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGTCCGGAAAGTTTGAAGTATGCGGATTCAAAACGGGGCTAATAACTAC</left_flank>
        <right_flank>TTTTTTCAGTGGTGTGTGTTTGTGTTGGGCATGGTCAAATTATGTGATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAGAGGAAGAGACGCAGAGAGAAGGTGAGAGAGAACGAGAAGAAGAAAGGCCGTTCGTTGTTGTATTGAGAGAGAGAGAGTGATCGGTTGTTCGGAGAAACGATCCATCACTTTTCTTCCCGAGAGAGTTATATCAGAAAGTTATCAATGATGGAGCGAATTTTCCGGGAATCCAGATGGACGGGAAAGGATACAGATTGCCTAGAATAGTACAGTATCGGTCAATAAGATATACAAAATCATGTTTTTAAATTGGTTTTCTGCCATTTCGACCTTTTTCAGAAGGTTTTCTAGTTTCCGGTAACTTCAAGGACTCTGGTGGGTAAAAAACACATTTTCAGAAAACTTGAGAAGAGAAAAGAATTGAGAAGATCAAGAAAACCATACCCCAGGAATACAAAAAAAGAAGAAATATTTGTCTTCCAGAACTTTCTGTACTTGTCTAGACAGTCCGGAAAGTTTGAAGTATGCGGATTCAAAACGGGGCTAATAACTACTTTTTTTCAGTGGTGTGTGTTTGTGTTGGGCATGGTCAAATTATGTGATTCGAGCTGCAATGCGCTAGTCAATTGTCTTCGTATTTTAAATCCTATTGTCCTCATTGTTGCATGTGGGGTATTTATCGTGTTCTGCAGGTTTCTGTAGAGTATGAAGACTCAGCTACAGTGAGGAATAACGGGTGGACAAGATGGAAAATTGGGGCTAATTTAGAAAATAAAAATTTTCGAAAAAAAACATCTTAAAAACTGTAATATAGCGGCCTATACTTGCCTATACTTGCACTTTCAGTTTGATTATTTCATGTTCTGTGAGAGATATCAACAGTGGGCTTACTACGAAAATTTTGGTGATATTATGATAAAAAGTTTATCAGTTTTCCAAAATTTTCTACTGAAATTGAGATAATGGAGCTCAAAGTGGGTGTTACGGTTGGCGTCTCTATTGCAGTGTTTACTGCACTTTTAGAATTTTGAGACTCTCGCTAGAAATTCATTTTC</canonical>
            <polymorphic>GGAAGAGGAAGAGACGCAGAGAGAAGGTGAGAGAGAACGAGAAGAAGAAAGGCCGTTCGTTGTTGTATTGAGAGAGAGAGAGTGATCGGTTGTTCGGAGAAACGATCCATCACTTTTCTTCCCGAGAGAGTTATATCAGAAAGTTATCAATGATGGAGCGAATTTTCCGGGAATCCAGATGGACGGGAAAGGATACAGATTGCCTAGAATAGTACAGTATCGGTCAATAAGATATACAAAATCATGTTTTTAAATTGGTTTTCTGCCATTTCGACCTTTTTCAGAAGGTTTTCTAGTTTCCGGTAACTTCAAGGACTCTGGTGGGTAAAAAACACATTTTCAGAAAACTTGAGAAGAGAAAAGAATTGAGAAGATCAAGAAAACCATACCCCAGGAATACAAAAAAAGAAGAAATATTTGTCTTCCAGAACTTTCTGTACTTGTCTAGACAGTCCGGAAAGTTTGAAGTATGCGGATTCAAAACGGGGCTAATAACTACWTTTTTTCAGTGGTGTGTGTTTGTGTTGGGCATGGTCAAATTATGTGATTCGAGCTGCAATGCGCTAGTCAATTGTCTTCGTATTTTAAATCCTATTGTCCTCATTGTTGCATGTGGGGTATTTATCGTGTTCTGCAGGTTTCTGTAGAGTATGAAGACTCAGCTACAGTGAGGAATAACGGGTGGACAAGATGGAAAATTGGGGCTAATTTAGAAAATAAAAATTTTCGAAAAAAAACATCTTAAAAACTGTAATATAGCGGCCTATACTTGCCTATACTTGCACTTTCAGTTTGATTATTTCATGTTCTGTGAGAGATATCAACAGTGGGCTTACTACGAAAATTTTGGTGATATTATGATAAAAAGTTTATCAGTTTTCCAAAATTTTCTACTGAAATTGAGATAATGGAGCTCAAAGTGGGTGTTACGGTTGGCGTCTCTATTGCAGTGTTTACTGCACTTTTAGAATTTTGAGACTCTCGCTAGAAATTCATTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAGAATTGAGAAGATCAAGA</pcr_primer_p1>
		<pcr_primer_p2>AACAATGAGGACAATAGGATTTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAAAAGAATTGAGAAGATCAAGAAAACCATACCCCAGGAATACAAAAAAAGAAGAAATATTTGTCTTCCAGAACTTTCTGTACTTGTCTAGACAGTCCGGAAAGTTTGAAGTATGCGGATTCAAAACGGGGCTAATAACTACTTTTTTTCAGTGGTGTGTGTTTGTGTTGGGCATGGTCAAATTATGTGATTCGAGCTGCAATGCGCTAGTCAATTGTCTTCGTATTTTAAATCCTATTGTCCTCATTGTT</canonical_amplicon>
		<polymorphic_amplicon>GAAAAGAATTGAGAAGATCAAGAAAACCATACCCCAGGAATACAAAAAAAGAAGAAATATTTGTCTTCCAGAACTTTCTGTACTTGTCTAGACAGTCCGGAAAGTTTGAAGTATGCGGATTCAAAACGGGGCTAATAACTACWTTTTTTCAGTGGTGTGTGTTTGTGTTGGGCATGGTCAAATTATGTGATTCGAGCTGCAATGCGCTAGTCAATTGTCTTCGTATTTTAAATCCTATTGTCCTCATTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33158</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>133870</contig_pos>
        <strand></strand>
        <context>CTCCTAAATT[A/T]atatatatat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATGCAAAAAAAACCTATTTATCTATTTGCCCTGAACTCTCCTAAATT</left_flank>
        <right_flank>ATATATATATATATATATATATATATATATATATATACTCCTCAATCGAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAATGTGTCTCAACCTTGTTGATATTCCTGTTGGAGACAGTCTCATCGAGTCACTTCATTTAATGTTTGACACATTCATTCAATTCAAAAAGTCACAACATTTCAAGAACTTGGAGTACAATTTGGATCTTTTAAAAGAGAAGAAAGAGAAGATTGATGTTTTAGAACTCTAACGTGACAAGCCACACTTTTGCCATCAAGTCAGTTTTGCTGATAACAGCCTGTCACAACTCTTCTTGTCTCTTTTTTCCTCCAATTTTTGTTCTTCTCCGTTTCCCACCCAACAACCGCAATAACTCGTATAATCTTTAATGTTAACAAAACACTTTATTCATCACTCTAAACTACCCCCTACTGAAAAAATTCCTCAATCTACCCGTTCCAAATTCAATATTCCCCAGATTCGATAAATTCTGGATTAATCCTTAATCAACATATATGTATGCGTAAAATGCAAAAAAAACCTATTTATCTATTTGCCCTGAACTCTCCTAAATTAATATATATATATATATATATATATATATATATATATACTCCTCAATCGATTTAATGTACCTATATTTATTCAGTCTTGTGAAAATATTTATTCGTCAATAAATACTCGGAATAAAGATCATTTTTTTCAGATTAAAATATTTCTAATAAAATTTTAAAAATTCCAAACTTTGAAAATTTGGACAACTGTGTCTGATTGAATAATTTAAAAATTGGAATTGTCCAAAAATCGAAATTCTGTCCGATTTACTGATTTTCGTTTTTGTTTTTAAATCTCAAATTTTCAAAGACAAAAATTCTATAAATTCAAAACTCTGAAAATTGAAAAAAAGTAGAAAGAAAAAAATGTCAAAATTTTTTTCCCTTTTCGTTAATCCCACAGAAGTTAAAATTCTCTTATAAGGGATATCCTAACAGTAACTTTTCATTTCCACTATTGTTTTTATGAAAAAGAAAGAGGTCATGGCCTCACTCACACCTTGCCATGTGTGGTTTTCCAAT</canonical>
            <polymorphic>GAAATGTGTCTCAACCTTGTTGATATTCCTGTTGGAGACAGTCTCATCGAGTCACTTCATTTAATGTTTGACACATTCATTCAATTCAAAAAGTCACAACATTTCAAGAACTTGGAGTACAATTTGGATCTTTTAAAAGAGAAGAAAGAGAAGATTGATGTTTTAGAACTCTAACGTGACAAGCCACACTTTTGCCATCAAGTCAGTTTTGCTGATAACAGCCTGTCACAACTCTTCTTGTCTCTTTTTTCCTCCAATTTTTGTTCTTCTCCGTTTCCCACCCAACAACCGCAATAACTCGTATAATCTTTAATGTTAACAAAACACTTTATTCATCACTCTAAACTACCCCCTACTGAAAAAATTCCTCAATCTACCCGTTCCAAATTCAATATTCCCCAGATTCGATAAATTCTGGATTAATCCTTAATCAACATATATGTATGCGTAAAATGCAAAAAAAACCTATTTATCTATTTGCCCTGAACTCTCCTAAATTWATATATATATATATATATATATATATATATATATATACTCCTCAATCGATTTAATGTACCTATATTTATTCAGTCTTGTGAAAATATTTATTCGTCAATAAATACTCGGAATAAAGATCATTTTTTTCAGATTAAAATATTTCTAATAAAATTTTAAAAATTCCAAACTTTGAAAATTTGGACAACTGTGTCTGATTGAATAATTTAAAAATTGGAATTGTCCAAAAATCGAAATTCTGTCCGATTTACTGATTTTCGTTTTTGTTTTTAAATCTCAAATTTTCAAAGACAAAAATTCTATAAATTCAAAACTCTGAAAATTGAAAAAAAGTAGAAAGAAAAAAATGTCAAAATTTTTTTCCCTTTTCGTTAATCCCACAGAAGTTAAAATTCTCTTATAAGGGATATCCTAACAGTAACTTTTCATTTCCACTATTGTTTTTATGAAAAAGAAAGAGGTCATGGCCTCACTCACACCTTGCCATGTGTGGTTTTCCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 420 78</canonical_bands>
                <polymorphic_bands>580 420</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>177 115 104 102 81 72 71 63 61 53 51 22 15 7 6</canonical_bands>
                <polymorphic_bands>177 124 115 104 102 81 72 63 61 51 22 15 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCTAAACTACCCCCTACTGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCACAAGACTGAATAAATATAGG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTCTAAACTACCCCCTACTGAAAAAATTCCTCAATCTACCCGTTCCAAATTCAATATTCCCCAGATTCGATAAATTCTGGATTAATCCTTAATCAACATATATGTATGCGTAAAATGCAAAAAAAACCTATTTATCTATTTGCCCTGAACTCTCCTAAATTAATATATATATATATATATATATATATATATATATATACTCCTCAATCGATTTAATGTACCTATATTTATTCAGTCTTGTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACTCTAAACTACCCCCTACTGAAAAAATTCCTCAATCTACCCGTTCCAAATTCAATATTCCCCAGATTCGATAAATTCTGGATTAATCCTTAATCAACATATATGTATGCGTAAAATGCAAAAAAAACCTATTTATCTATTTGCCCTGAACTCTCCTAAATTWATATATATATATATATATATATATATATATATATATACTCCTCAATCGATTTAATGTACCTATATTTATTCAGTCTTGTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33159</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>138272</contig_pos>
        <strand>+</strand>
        <context>AAAAACATTG[A/T]TTTTTTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTAACTGGGTTGGCCTGGAATTTGACAAGTATGCACTTAAAAAACATTG</left_flank>
        <right_flank>TTTTTTTTCAGCACAACTATCGAATTGTATTCGCCGAGAAGATTCCAGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCGGATTCTTCTGGCCAAATGTTTTCTTCAAGGCGCTCAACGACATCTCATTGGTTATGGGTTCCGCTCAACAGGAGGACGTCGAGTCGGTGCTCACAAAATTCTATCACACGGACATACCAAACATTGATGAGTATCTTCGATTCGTCGACCACAATCCAAAGGTAATTATGGATGAAGATGAAGCTAAAAACAAAAGAGCAAAATGAATTTCGGCACATTTAAGTAAACTTTTCACGGCCGGGCCTGGCTGTGTCGAAACTAAAAATTTTCCGATCTGGCCCGGCCCTATCGGCTCTGGTCTGATTATGAAAATTTCAAATTCTGAAGTCCTTGCGAATTTTTAAAAGCTTTTTATGAATATTTCAAGACATTTTCTTCAAAATGGAATTCGATAGATGATTTTTCAAAATATTGCTACCTGCAGTGACCGGGCCTGGCCGAGCCGGTTAACTGGGTTGGCCTGGAATTTGACAAGTATGCACTTAAAAAACATTGTTTTTTTTTCAGCACAACTATCGAATTGTATTCGCCGAGAAGATTCCAGACCCAACTCGACTGCCAACATTGAGTTCGGACAAGTACTTCCTCGAGTTCTACAATGCCATCGATCCACGACAGACGCTTGCAATCTTTGCCAGTCTTCTGAAGGAGCGACGTATCTTGTTCACCGGACGGAAAGTTGGAACACTGAGCTCTTGTCTGCATGCTGTCTCGATGTTGCTTTACCCAATGTGCTGGTGAGTATCATTAAAGGGGCAATAATGCGGACAAATTGGCGTTATCAGAAAAATAGCATTGCATAGCTTCACACAAGCTTGTCGGTACGCGGCTCGGGCCGTGGGTATGTTTCACTGGTTCAAATTGTTCACTCTTTTGGAAATTAGCACTGACAACCAAGCAATTACTAAGGCCGCTAGGCTTCCCAATTTTACAAATCCCAGAAACAAAACATCGAGAAAGCCGCGGCACTGTTTCCGACATACCTGACTGCGCGTA</canonical>
            <polymorphic>AGCGGATTCTTCTGGCCAAATGTTTTCTTCAAGGCGCTCAACGACATCTCATTGGTTATGGGTTCCGCTCAACAGGAGGACGTCGAGTCGGTGCTCACAAAATTCTATCACACGGACATACCAAACATTGATGAGTATCTTCGATTCGTCGACCACAATCCAAAGGTAATTATGGATGAAGATGAAGCTAAAAACAAAAGAGCAAAATGAATTTCGGCACATTTAAGTAAACTTTTCACGGCCGGGCCTGGCTGTGTCGAAACTAAAAATTTTCCGATCTGGCCCGGCCCTATCGGCTCTGGTCTGATTATGAAAATTTCAAATTCTGAAGTCCTTGCGAATTTTTAAAAGCTTTTTATGAATATTTCAAGACATTTTCTTCAAAATGGAATTCGATAGATGATTTTTCAAAATATTGCTACCTGCAGTGACCGGGCCTGGCCGAGCCGGTTAACTGGGTTGGCCTGGAATTTGACAAGTATGCACTTAAAAAACATTGWTTTTTTTTCAGCACAACTATCGAATTGTATTCGCCGAGAAGATTCCAGACCCAACTCGACTGCCAACATTGAGTTCGGACAAGTACTTCCTCGAGTTCTACAATGCCATCGATCCACGACAGACGCTTGCAATCTTTGCCAGTCTTCTGAAGGAGCGACGTATCTTGTTCACCGGACGGAAAGTTGGAACACTGAGCTCTTGTCTGCATGCTGTCTCGATGTTGCTTTACCCAATGTGCTGGTGAGTATCATTAAAGGGGCAATAATGCGGACAAATTGGCGTTATCAGAAAAATAGCATTGCATAGCTTCACACAAGCTTGTCGGTACGCGGCTCGGGCCGTGGGTATGTTTCACTGGTTCAAATTGTTCACTCTTTTGGAAATTAGCACTGACAACCAAGCAATTACTAAGGCCGCTAGGCTTCCCAATTTTACAAATCCCAGAAACAAAACATCGAGAAAGCCGCGGCACTGTTTCCGACATACCTGACTGCGCGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCACATTTAAGTAAACTTTTCA</pcr_primer_p1>
		<pcr_primer_p2>GTACTTGTCCGAACTCAATGTT</pcr_primer_p2>
		<pcr_amplicon_size>371</pcr_amplicon_size>
		<canonical_amplicon>GGCACATTTAAGTAAACTTTTCACGGCCGGGCCTGGCTGTGTCGAAACTAAAAATTTTCCGATCTGGCCCGGCCCTATCGGCTCTGGTCTGATTATGAAAATTTCAAATTCTGAAGTCCTTGCGAATTTTTAAAAGCTTTTTATGAATATTTCAAGACATTTTCTTCAAAATGGAATTCGATAGATGATTTTTCAAAATATTGCTACCTGCAGTGACCGGGCCTGGCCGAGCCGGTTAACTGGGTTGGCCTGGAATTTGACAAGTATGCACTTAAAAAACATTGTTTTTTTTTCAGCACAACTATCGAATTGTATTCGCCGAGAAGATTCCAGACCCAACTCGACTGCCAACATTGAGTTCGGACAAGTAC</canonical_amplicon>
		<polymorphic_amplicon>GGCACATTTAAGTAAACTTTTCACGGCCGGGCCTGGCTGTGTCGAAACTAAAAATTTTCCGATCTGGCCCGGCCCTATCGGCTCTGGTCTGATTATGAAAATTTCAAATTCTGAAGTCCTTGCGAATTTTTAAAAGCTTTTTATGAATATTTCAAGACATTTTCTTCAAAATGGAATTCGATAGATGATTTTTCAAAATATTGCTACCTGCAGTGACCGGGCCTGGCCGAGCCGGTTAACTGGGTTGGCCTGGAATTTGACAAGTATGCACTTAAAAAACATTGWTTTTTTTTCAGCACAACTATCGAATTGTATTCGCCGAGAAGATTCCAGACCCAACTCGACTGCCAACATTGAGTTCGGACAAGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33160</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>138315</contig_pos>
        <strand></strand>
        <context>GCCGAGAAGA[T/A]TCCAGACCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AACATTGTTTTTTTTTCAGCACAACTATCGAATTGTATTCGCCGAGAAGA</left_flank>
        <right_flank>TCCAGACCCAACTCGACTGCCAACATTGAGTTCGGACAAGTACTTCCTCG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATCTCATTGGTTATGGGTTCCGCTCAACAGGAGGACGTCGAGTCGGTGCTCACAAAATTCTATCACACGGACATACCAAACATTGATGAGTATCTTCGATTCGTCGACCACAATCCAAAGGTAATTATGGATGAAGATGAAGCTAAAAACAAAAGAGCAAAATGAATTTCGGCACATTTAAGTAAACTTTTCACGGCCGGGCCTGGCTGTGTCGAAACTAAAAATTTTCCGATCTGGCCCGGCCCTATCGGCTCTGGTCTGATTATGAAAATTTCAAATTCTGAAGTCCTTGCGAATTTTTAAAAGCTTTTTATGAATATTTCAAGACATTTTCTTCAAAATGGAATTCGATAGATGATTTTTCAAAATATTGCTACCTGCAGTGACCGGGCCTGGCCGAGCCGGTTAACTGGGTTGGCCTGGAATTTGACAAGTATGCACTTAAAAAACATTGTTTTTTTTTCAGCACAACTATCGAATTGTATTCGCCGAGAAGATTCCAGACCCAACTCGACTGCCAACATTGAGTTCGGACAAGTACTTCCTCGAGTTCTACAATGCCATCGATCCACGACAGACGCTTGCAATCTTTGCCAGTCTTCTGAAGGAGCGACGTATCTTGTTCACCGGACGGAAAGTTGGAACACTGAGCTCTTGTCTGCATGCTGTCTCGATGTTGCTTTACCCAATGTGCTGGTGAGTATCATTAAAGGGGCAATAATGCGGACAAATTGGCGTTATCAGAAAAATAGCATTGCATAGCTTCACACAAGCTTGTCGGTACGCGGCTCGGGCCGTGGGTATGTTTCACTGGTTCAAATTGTTCACTCTTTTGGAAATTAGCACTGACAACCAAGCAATTACTAAGGCCGCTAGGCTTCCCAATTTTACAAATCCCAGAAACAAAACATCGAGAAAGCCGCGGCACTGTTTCCGACATACCTGACTGCGCGTAGAGATTTATTTCATACTTAGTAAGTACTGACTACAATCATAAG</canonical>
            <polymorphic>ACATCTCATTGGTTATGGGTTCCGCTCAACAGGAGGACGTCGAGTCGGTGCTCACAAAATTCTATCACACGGACATACCAAACATTGATGAGTATCTTCGATTCGTCGACCACAATCCAAAGGTAATTATGGATGAAGATGAAGCTAAAAACAAAAGAGCAAAATGAATTTCGGCACATTTAAGTAAACTTTTCACGGCCGGGCCTGGCTGTGTCGAAACTAAAAATTTTCCGATCTGGCCCGGCCCTATCGGCTCTGGTCTGATTATGAAAATTTCAAATTCTGAAGTCCTTGCGAATTTTTAAAAGCTTTTTATGAATATTTCAAGACATTTTCTTCAAAATGGAATTCGATAGATGATTTTTCAAAATATTGCTACCTGCAGTGACCGGGCCTGGCCGAGCCGGTTAACTGGGTTGGCCTGGAATTTGACAAGTATGCACTTAAAAAACATTGTTTTTTTTTCAGCACAACTATCGAATTGTATTCGCCGAGAAGAWTCCAGACCCAACTCGACTGCCAACATTGAGTTCGGACAAGTACTTCCTCGAGTTCTACAATGCCATCGATCCACGACAGACGCTTGCAATCTTTGCCAGTCTTCTGAAGGAGCGACGTATCTTGTTCACCGGACGGAAAGTTGGAACACTGAGCTCTTGTCTGCATGCTGTCTCGATGTTGCTTTACCCAATGTGCTGGTGAGTATCATTAAAGGGGCAATAATGCGGACAAATTGGCGTTATCAGAAAAATAGCATTGCATAGCTTCACACAAGCTTGTCGGTACGCGGCTCGGGCCGTGGGTATGTTTCACTGGTTCAAATTGTTCACTCTTTTGGAAATTAGCACTGACAACCAAGCAATTACTAAGGCCGCTAGGCTTCCCAATTTTACAAATCCCAGAAACAAAACATCGAGAAAGCCGCGGCACTGTTTCCGACATACCTGACTGCGCGTAGAGATTTATTTCATACTTAGTAAGTACTGACTACAATCATAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 398 100</canonical_bands>
                <polymorphic_bands>900 100</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAATTTGACAAGTATGCACTTA</pcr_primer_p1>
		<pcr_primer_p2>AGAGCTCAGTGTTCCAACTTT</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>GGAATTTGACAAGTATGCACTTAAAAAACATTGTTTTTTTTTCAGCACAACTATCGAATTGTATTCGCCGAGAAGATTCCAGACCCAACTCGACTGCCAACATTGAGTTCGGACAAGTACTTCCTCGAGTTCTACAATGCCATCGATCCACGACAGACGCTTGCAATCTTTGCCAGTCTTCTGAAGGAGCGACGTATCTTGTTCACCGGACGGAAAGTTGGAACACTGAGCTCT</canonical_amplicon>
		<polymorphic_amplicon>GGAATTTGACAAGTATGCACTTAAAAAACATTGTTTTTTTTTCAGCACAACTATCGAATTGTATTCGCCGAGAAGAWTCCAGACCCAACTCGACTGCCAACATTGAGTTCGGACAAGTACTTCCTCGAGTTCTACAATGCCATCGATCCACGACAGACGCTTGCAATCTTTGCCAGTCTTCTGAAGGAGCGACGTATCTTGTTCACCGGACGGAAAGTTGGAACACTGAGCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33161</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>142658</contig_pos>
        <strand></strand>
        <context>CCATAccgcc[A/T]tattttcata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATATCAAAATTTCAAATCTCAAAATCTTGGAGGAAAAACCCATACCGCC</left_flank>
        <right_flank>TATTTTCATAGATTTTAAGCCCATTTTTCTCGGTTCCTGTGAAAGATATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGGTCACAAAACACGATTTCGTATAGCTTGCTGCTCGGAAAAATTGAACTTTTTTGGAATGGAAAAAAACGGATACGGTAGTTACCAAAATTATGTTGTAAAATCTAGGAAAATGAGAGAAAATACTCATTAAGAAAGATGAAATACCGTGAGCCTATCCAAACCGTCGACTTTGAGCTTCATTATCTCGATCCCTGATATCTGTTAACTTAAAAACTATTTATAATAAAATCAGATATTTGTTTTAAATTTTTGATATCTTTCCTAGTAATCAAGGTAAATGAGATCAAAGTCGACATTACAGTTTTTTGAATTTCAACGGTTATTAGCCGACTTTGCGACTTTGTAGGTACTGTAGCTGCGCGGTAGCATGAGAAATTTGCGTCACTCGTTCAATTGCTTCGATAAGTGAAACAACAAAAACATTTTTTAATGTCTCACTACAGTAATATCAAAATTTCAAATCTCAAAATCTTGGAGGAAAAACCCATACCGCCATATTTTCATAGATTTTAAGCCCATTTTTCTCGGTTCCTGTGAAAGATATTAAAAAGTTGTGAATTAATAAATTTTACTGATATTATGATAAATAATTAATCAGGTGACAAAATTTTCATATCTTTCACAAAATTCGTGCTCTGAAAATTAAATTTATATTAAACTAATTCTTGCCAGTTATTTCTAGAATGCTCAATTTTTCATACTAATTCAACTGTTCCCTTTTCAGAACGCCATCACAACCCATTCACAACGTTTTCGCCGACCCATTCGCCACTTCTCCAGACGGTCCAGCTCCACCACTGCCATCTCGACCACCTCCACCACTAGTTCCTCGCATGATTCCTGGCTCATCGACCCAGCCGTTCCCGGCCAGCGGCTCATCTGCTCCTCACCTTGTTCAGTTCAATCAAGGCCTACAATGGACTCAAATCCGTCCGATTGAGAGCAATCCAACGCCTGCTAATACAGCTGTATGGCAACCGCCACCACCACTACCA</canonical>
            <polymorphic>AATGGTCACAAAACACGATTTCGTATAGCTTGCTGCTCGGAAAAATTGAACTTTTTTGGAATGGAAAAAAACGGATACGGTAGTTACCAAAATTATGTTGTAAAATCTAGGAAAATGAGAGAAAATACTCATTAAGAAAGATGAAATACCGTGAGCCTATCCAAACCGTCGACTTTGAGCTTCATTATCTCGATCCCTGATATCTGTTAACTTAAAAACTATTTATAATAAAATCAGATATTTGTTTTAAATTTTTGATATCTTTCCTAGTAATCAAGGTAAATGAGATCAAAGTCGACATTACAGTTTTTTGAATTTCAACGGTTATTAGCCGACTTTGCGACTTTGTAGGTACTGTAGCTGCGCGGTAGCATGAGAAATTTGCGTCACTCGTTCAATTGCTTCGATAAGTGAAACAACAAAAACATTTTTTAATGTCTCACTACAGTAATATCAAAATTTCAAATCTCAAAATCTTGGAGGAAAAACCCATACCGCCWTATTTTCATAGATTTTAAGCCCATTTTTCTCGGTTCCTGTGAAAGATATTAAAAAGTTGTGAATTAATAAATTTTACTGATATTATGATAAATAATTAATCAGGTGACAAAATTTTCATATCTTTCACAAAATTCGTGCTCTGAAAATTAAATTTATATTAAACTAATTCTTGCCAGTTATTTCTAGAATGCTCAATTTTTCATACTAATTCAACTGTTCCCTTTTCAGAACGCCATCACAACCCATTCACAACGTTTTCGCCGACCCATTCGCCACTTCTCCAGACGGTCCAGCTCCACCACTGCCATCTCGACCACCTCCACCACTAGTTCCTCGCATGATTCCTGGCTCATCGACCCAGCCGTTCCCGGCCAGCGGCTCATCTGCTCCTCACCTTGTTCAGTTCAATCAAGGCCTACAATGGACTCAAATCCGTCCGATTGAGAGCAATCCAACGCCTGCTAATACAGCTGTATGGCAACCGCCACCACCACTACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCGATAAGTGAAACAACAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTAATTTTCAGAGCACGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCGATAAGTGAAACAACAAAAACATTTTTTAATGTCTCACTACAGTAATATCAAAATTTCAAATCTCAAAATCTTGGAGGAAAAACCCATACCGCCATATTTTCATAGATTTTAAGCCCATTTTTCTCGGTTCCTGTGAAAGATATTAAAAAGTTGTGAATTAATAAATTTTACTGATATTATGATAAATAATTAATCAGGTGACAAAATTTTCATATCTTTCACAAAATTCGTGCTCTGAAAATTAA</canonical_amplicon>
		<polymorphic_amplicon>CTTCGATAAGTGAAACAACAAAAACATTTTTTAATGTCTCACTACAGTAATATCAAAATTTCAAATCTCAAAATCTTGGAGGAAAAACCCATACCGCCWTATTTTCATAGATTTTAAGCCCATTTTTCTCGGTTCCTGTGAAAGATATTAAAAAGTTGTGAATTAATAAATTTTACTGATATTATGATAAATAATTAATCAGGTGACAAAATTTTCATATCTTTCACAAAATTCGTGCTCTGAAAATTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33162</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>164649</contig_pos>
        <strand>+</strand>
        <context>GATATGAAAG[A/G]TTTTTTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGAAATTTCGTTCTTGGATGTCATTTGTTTAATTTCGAGGATATGAAAG</left_flank>
        <right_flank>TTTTTTTTCAAGTGGATGTGGAGATTGTTTGTTTCTAGAATGATAACGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAAACTCGGTTTCTATGATGATTTGACGACATCGTCAAAATCACAAAAAAAGATTCGCTGTGAGAATGCTGTAAAACCTTTTGGGCCGAGTTGAGTTTTCCTTCCTTTTTAGAGTCAAACTATAGTTTTTTTTCAGAAATCGATGTGATCTCTGCACCTTAATCTTTAAAAACGATGGGAATGCCGTTGGTTGATTGAGATACATATCATGGACCAGGATTAGTATTGTGATGGTCCTAAATGATCAATTGATACTGGATGGATAATTGTTCGAACGTAAGTTCAAACTTTGTTTTTTCAGAGTCAAGAAGTATTTTTTTTTCAGATGCAGACATATTCGTCATATCCTATCTAACGACACCAAAAAATAAGGGACCAGGGGTTCAACAACCAGCATATGCCAAAATTATACACTTCCCGAGGAAGCTGCCGATACTGTTATTATTTCGGAAATTTCGTTCTTGGATGTCATTTGTTTAATTTCGAGGATATGAAAGTTTTTTTTTCAAGTGGATGTGGAGATTGTTTGTTTCTAGAATGATAACGGTAAATTGATTATAACAGTTTTTCCGAGTTAAATGATTTGTATTTTTTTCAGAAATTGATGTTATTTTCAGTTGAAGTCGAGTTGGTCAACCTTCAACCGATTGACGTAAAGGAATTATCCCAATAACAATTTGGATAACATGGAACTTCATCGAATGGTGTTTTGTACGTTGCAGAAACCGGGACTTTGTTGGGGAAAGTCAATATTTCCTTCTTCATTCCCAGTAACTATTGTTACAAAAATTGACTGAATCGTTTTCCGAATTTTTATTAATTATACGTTTCCTTAACCTCACTTCCCTTTTTGTTGTATTGTTTTTTTTTCGCCTTCTCCTAAATTCATTTTAGTTTTTTAAACAAATTTTTTTTTCAACTTTTCTTATTTGTATCTTGAATCTTTATTGTTTTTTCGTTATGTTACCGCATATCTTATCCTCTTTGTTTTACTGAGT</canonical>
            <polymorphic>TGGAAACTCGGTTTCTATGATGATTTGACGACATCGTCAAAATCACAAAAAAAGATTCGCTGTGAGAATGCTGTAAAACCTTTTGGGCCGAGTTGAGTTTTCCTTCCTTTTTAGAGTCAAACTATAGTTTTTTTTCAGAAATCGATGTGATCTCTGCACCTTAATCTTTAAAAACGATGGGAATGCCGTTGGTTGATTGAGATACATATCATGGACCAGGATTAGTATTGTGATGGTCCTAAATGATCAATTGATACTGGATGGATAATTGTTCGAACGTAAGTTCAAACTTTGTTTTTTCAGAGTCAAGAAGTATTTTTTTTTCAGATGCAGACATATTCGTCATATCCTATCTAACGACACCAAAAAATAAGGGACCAGGGGTTCAACAACCAGCATATGCCAAAATTATACACTTCCCGAGGAAGCTGCCGATACTGTTATTATTTCGGAAATTTCGTTCTTGGATGTCATTTGTTTAATTTCGAGGATATGAAAGRTTTTTTTTCAAGTGGATGTGGAGATTGTTTGTTTCTAGAATGATAACGGTAAATTGATTATAACAGTTTTTCCGAGTTAAATGATTTGTATTTTTTTCAGAAATTGATGTTATTTTCAGTTGAAGTCGAGTTGGTCAACCTTCAACCGATTGACGTAAAGGAATTATCCCAATAACAATTTGGATAACATGGAACTTCATCGAATGGTGTTTTGTACGTTGCAGAAACCGGGACTTTGTTGGGGAAAGTCAATATTTCCTTCTTCATTCCCAGTAACTATTGTTACAAAAATTGACTGAATCGTTTTCCGAATTTTTATTAATTATACGTTTCCTTAACCTCACTTCCCTTTTTGTTGTATTGTTTTTTTTTCGCCTTCTCCTAAATTCATTTTAGTTTTTTAAACAAATTTTTTTTTCAACTTTTCTTATTTGTATCTTGAATCTTTATTGTTTTTTCGTTATGTTACCGCATATCTTATCCTCTTTGTTTTACTGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTCATATCCTATCTAACGACAC</pcr_primer_p1>
		<pcr_primer_p2>TACAAATCATTTAACTCGGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTCATATCCTATCTAACGACACCAAAAAATAAGGGACCAGGGGTTCAACAACCAGCATATGCCAAAATTATACACTTCCCGAGGAAGCTGCCGATACTGTTATTATTTCGGAAATTTCGTTCTTGGATGTCATTTGTTTAATTTCGAGGATATGAAAGTTTTTTTTTCAAGTGGATGTGGAGATTGTTTGTTTCTAGAATGATAACGGTAAATTGATTATAACAGTTTTTCCGAGTTAAATGATTTGTA</canonical_amplicon>
		<polymorphic_amplicon>CGTCATATCCTATCTAACGACACCAAAAAATAAGGGACCAGGGGTTCAACAACCAGCATATGCCAAAATTATACACTTCCCGAGGAAGCTGCCGATACTGTTATTATTTCGGAAATTTCGTTCTTGGATGTCATTTGTTTAATTTCGAGGATATGAAAGRTTTTTTTTCAAGTGGATGTGGAGATTGTTTGTTTCTAGAATGATAACGGTAAATTGATTATAACAGTTTTTCCGAGTTAAATGATTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33163</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>165013</contig_pos>
        <strand>+</strand>
        <context>TGTTGTATTG[C/T]TTTTTTTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTATTAATTATACGTTTCCTTAACCTCACTTCCCTTTTTGTTGTATTG</left_flank>
        <right_flank>TTTTTTTTCGCCTTCTCCTAAATTCATTTTAGTTTTTTAAACAAATTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAATAAGGGACCAGGGGTTCAACAACCAGCATATGCCAAAATTATACACTTCCCGAGGAAGCTGCCGATACTGTTATTATTTCGGAAATTTCGTTCTTGGATGTCATTTGTTTAATTTCGAGGATATGAAAGTTTTTTTTTCAAGTGGATGTGGAGATTGTTTGTTTCTAGAATGATAACGGTAAATTGATTATAACAGTTTTTCCGAGTTAAATGATTTGTATTTTTTTCAGAAATTGATGTTATTTTCAGTTGAAGTCGAGTTGGTCAACCTTCAACCGATTGACGTAAAGGAATTATCCCAATAACAATTTGGATAACATGGAACTTCATCGAATGGTGTTTTGTACGTTGCAGAAACCGGGACTTTGTTGGGGAAAGTCAATATTTCCTTCTTCATTCCCAGTAACTATTGTTACAAAAATTGACTGAATCGTTTTCCGAATTTTTATTAATTATACGTTTCCTTAACCTCACTTCCCTTTTTGTTGTATTGTTTTTTTTTCGCCTTCTCCTAAATTCATTTTAGTTTTTTAAACAAATTTTTTTTTCAACTTTTCTTATTTGTATCTTGAATCTTTATTGTTTTTTCGTTATGTTACCGCATATCTTATCCTCTTTGTTTTACTGAGTTTCTCTAATTGATTCTTTATATCAATCGGTTTTATTCCTATATCTTATTTCCCATACATATTTTTCAACAAGTTCACTTCAATAAAAGTCATTTTTCTGTTTTTTTCGTACGCCTGTGTTCTCATATCAGTTTGTTCTGGTGTTGCTTCTACCGATTTTTGTTATTTCTCATTTTCAAAACAGGCTCATCTTAAAGGTGCTGTACGGTGAATTGTTCAAATTCTCGTTTTGTGCAGAAAATTATGTCGATTTATATAAAAATGGAAGAATTTTTTTCGATAGAAACTCGTTCATTTAGAAAAAAAAAACCCTCATCAAAAAATAATTTTTCAAACATGTTATATTTCAGAACAAGTATGAGTTT</canonical>
            <polymorphic>AAAAAATAAGGGACCAGGGGTTCAACAACCAGCATATGCCAAAATTATACACTTCCCGAGGAAGCTGCCGATACTGTTATTATTTCGGAAATTTCGTTCTTGGATGTCATTTGTTTAATTTCGAGGATATGAAAGTTTTTTTTTCAAGTGGATGTGGAGATTGTTTGTTTCTAGAATGATAACGGTAAATTGATTATAACAGTTTTTCCGAGTTAAATGATTTGTATTTTTTTCAGAAATTGATGTTATTTTCAGTTGAAGTCGAGTTGGTCAACCTTCAACCGATTGACGTAAAGGAATTATCCCAATAACAATTTGGATAACATGGAACTTCATCGAATGGTGTTTTGTACGTTGCAGAAACCGGGACTTTGTTGGGGAAAGTCAATATTTCCTTCTTCATTCCCAGTAACTATTGTTACAAAAATTGACTGAATCGTTTTCCGAATTTTTATTAATTATACGTTTCCTTAACCTCACTTCCCTTTTTGTTGTATTGYTTTTTTTTCGCCTTCTCCTAAATTCATTTTAGTTTTTTAAACAAATTTTTTTTTCAACTTTTCTTATTTGTATCTTGAATCTTTATTGTTTTTTCGTTATGTTACCGCATATCTTATCCTCTTTGTTTTACTGAGTTTCTCTAATTGATTCTTTATATCAATCGGTTTTATTCCTATATCTTATTTCCCATACATATTTTTCAACAAGTTCACTTCAATAAAAGTCATTTTTCTGTTTTTTTCGTACGCCTGTGTTCTCATATCAGTTTGTTCTGGTGTTGCTTCTACCGATTTTTGTTATTTCTCATTTTCAAAACAGGCTCATCTTAAAGGTGCTGTACGGTGAATTGTTCAAATTCTCGTTTTGTGCAGAAAATTATGTCGATTTATATAAAAATGGAAGAATTTTTTTCGATAGAAACTCGTTCATTTAGAAAAAAAAAACCCTCATCAAAAAATAATTTTTCAAACATGTTATATTTCAGAACAAGTATGAGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTCTTCATTCCCAGTAACTAT</pcr_primer_p1>
		<pcr_primer_p2>GAAACTCAGTAAAACAAAGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CCTTCTTCATTCCCAGTAACTATTGTTACAAAAATTGACTGAATCGTTTTCCGAATTTTTATTAATTATACGTTTCCTTAACCTCACTTCCCTTTTTGTTGTATTGTTTTTTTTTCGCCTTCTCCTAAATTCATTTTAGTTTTTTAAACAAATTTTTTTTTCAACTTTTCTTATTTGTATCTTGAATCTTTATTGTTTTTTCGTTATGTTACCGCATATCTTATCCTCTTTGTTTTACTGAGTTTC</canonical_amplicon>
		<polymorphic_amplicon>CCTTCTTCATTCCCAGTAACTATTGTTACAAAAATTGACTGAATCGTTTTCCGAATTTTTATTAATTATACGTTTCCTTAACCTCACTTCCCTTTTTGTTGTATTGYTTTTTTTTCGCCTTCTCCTAAATTCATTTTAGTTTTTTAAACAAATTTTTTTTTCAACTTTTCTTATTTGTATCTTGAATCTTTATTGTTTTTTCGTTATGTTACCGCATATCTTATCCTCTTTGTTTTACTGAGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33164</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>178916</contig_pos>
        <strand></strand>
        <context>ttgccgaaat[C/T]gccgaaattt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATTTTTTTGACTAAATCTCTAAATTCAAAAAAATTTCAGTTGCCGAAAT</left_flank>
        <right_flank>GCCGAAATTTTTTTGCCGAAATCGGCAACGGCAATTTGGCAACTCTTTCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTAGAAAACGACGGCGATTATAAGGGGTACCCCAGACCAGGCCTGTGCGGCAACAATTTTTTTCGGCAATTCGGCAACTCGACAATTTGCCGAATACTTTTCGGCAACGTTCGGCAACTCGGCAATTGCCGAAAAAAATTCCGGCAATTTCGGCAACTTTCGGCAATTTTTGGCAACAAAAGTTTTGCGTCTTTTTTTAGTAAAATCAATATGTAACTCACCTGAAAATGCTTCTATCAGGCTCAGAACTACAGAAAATGTGTTTCATAAGTTCCTTAAAGAAGTAATTACAAAAATTGGCAACTCAAGACCACATTTTTTATGCAAATTTGAAGCCCATTTTTAGATCCGATGCAAGTATTTTTGATGATTATTGGGACACATTTCCTCTAAAATTCACTCTGAGGGATGATGGTATTCAAAATTTGATTTTTCGAACTTCGAAATCATTTTTTTGACTAAATCTCTAAATTCAAAAAAATTTCAGTTGCCGAAATCGCCGAAATTTTTTTGCCGAAATCGGCAACGGCAATTTGGCAACTCTTTCTTCGTTGCCGATTTCGGCAACGGCAAATCGGCAACAAAAATTCGGCAATTTCGGCTATTTCGGCAATCGGCAATTTGTTGCCGCACAGGCCTGCCCCAGACGAGCGGCCGACATCTCACGAGTTCCGCCGCCCGCTATGTTATAACGTGGTCCCTAGAGGGAGTGGTAGAAAGAGGAGACACAGCGCACAGTGAAATTAATATAGCTTGGAAATTGCAATGGAGACGGTTTTCGAAGAGAAAAAAAGAGAAGTGGGGTAATCGAGGGTGACAAAACTGAATTTCGCCTTCATTTTGCAAGAAAAGTCGTTTAGAAAAATATTTTTACGTTTATTCCCTCTAAAAAATTTTACGAAATTCTGGTAAACCTATTGCAAACTTTTCGAACTAAAGACCACATTTTTTGAGTGCGATCTTATCTGATGTAGAGTGAGAGAAAAATAATTAGGTAC</canonical>
            <polymorphic>CTGTAGAAAACGACGGCGATTATAAGGGGTACCCCAGACCAGGCCTGTGCGGCAACAATTTTTTTCGGCAATTCGGCAACTCGACAATTTGCCGAATACTTTTCGGCAACGTTCGGCAACTCGGCAATTGCCGAAAAAAATTCCGGCAATTTCGGCAACTTTCGGCAATTTTTGGCAACAAAAGTTTTGCGTCTTTTTTTAGTAAAATCAATATGTAACTCACCTGAAAATGCTTCTATCAGGCTCAGAACTACAGAAAATGTGTTTCATAAGTTCCTTAAAGAAGTAATTACAAAAATTGGCAACTCAAGACCACATTTTTTATGCAAATTTGAAGCCCATTTTTAGATCCGATGCAAGTATTTTTGATGATTATTGGGACACATTTCCTCTAAAATTCACTCTGAGGGATGATGGTATTCAAAATTTGATTTTTCGAACTTCGAAATCATTTTTTTGACTAAATCTCTAAATTCAAAAAAATTTCAGTTGCCGAAATYGCCGAAATTTTTTTGCCGAAATCGGCAACGGCAATTTGGCAACTCTTTCTTCGTTGCCGATTTCGGCAACGGCAAATCGGCAACAAAAATTCGGCAATTTCGGCTATTTCGGCAATCGGCAATTTGTTGCCGCACAGGCCTGCCCCAGACGAGCGGCCGACATCTCACGAGTTCCGCCGCCCGCTATGTTATAACGTGGTCCCTAGAGGGAGTGGTAGAAAGAGGAGACACAGCGCACAGTGAAATTAATATAGCTTGGAAATTGCAATGGAGACGGTTTTCGAAGAGAAAAAAAGAGAAGTGGGGTAATCGAGGGTGACAAAACTGAATTTCGCCTTCATTTTGCAAGAAAAGTCGTTTAGAAAAATATTTTTACGTTTATTCCCTCTAAAAAATTTTACGAAATTCTGGTAAACCTATTGCAAACTTTTCGAACTAAAGACCACATTTTTTGAGTGCGATCTTATCTGATGTAGAGTGAGAGAAAAATAATTAGGTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGTTTTCAAAAACAAGAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTGTCTCCTCTTTCTACCACTC</pcr_primer_p2>
		<pcr_amplicon_size>826</pcr_amplicon_size>
		<canonical_amplicon>TCGCCGAAATTTTTTTGCCGAAATCGGCAACGGCAATTTGGCAACTCTTTCTTCGTTGCCGATTTCGGCAACGGCAAATCGGCAACAAAAATTCGGCAATTTCGGCTATTTCGGCAATCGGCAATTTGTTGCCGCACAGGCCTGCCCCAGACGAGCGGCCGACATCTCACGAGTTCCGCCGCCCGCTATGTTATAACGTGGTCCCTAGAGGGAGTGGTAGAAAGAGGAGACAC</canonical_amplicon>
		<polymorphic_amplicon>TYGCCGAAATTTTTTTGCCGAAATCGGCAACGGCAATTTGGCAACTCTTTCTTCGTTGCCGATTTCGGCAACGGCAAATCGGCAACAAAAATTCGGCAATTTCGGCTATTTCGGCAATCGGCAATTTGTTGCCGCACAGGCCTGCCCCAGACGAGCGGCCGACATCTCACGAGTTCCGCCGCCCGCTATGTTATAACGTGGTCCCTAGAGGGAGTGGTAGAAAGAGGAGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33165</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>179016</contig_pos>
        <strand>+</strand>
        <context>ttcggcaatt[A/G]cggctatttc</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGTTGCCGATTTCGGCAACGGCAAATCGGCAACAAAAATTCGGCAATT</left_flank>
        <right_flank>CGGCTATTTCGGCAATCGGCAATTTGTTGCCGCACAGGCCTGCCCCAGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGGCAACGTTCGGCAACTCGGCAATTGCCGAAAAAAATTCCGGCAATTTCGGCAACTTTCGGCAATTTTTGGCAACAAAAGTTTTGCGTCTTTTTTTAGTAAAATCAATATGTAACTCACCTGAAAATGCTTCTATCAGGCTCAGAACTACAGAAAATGTGTTTCATAAGTTCCTTAAAGAAGTAATTACAAAAATTGGCAACTCAAGACCACATTTTTTATGCAAATTTGAAGCCCATTTTTAGATCCGATGCAAGTATTTTTGATGATTATTGGGACACATTTCCTCTAAAATTCACTCTGAGGGATGATGGTATTCAAAATTTGATTTTTCGAACTTCGAAATCATTTTTTTGACTAAATCTCTAAATTCAAAAAAATTTCAGTTGCCGAAATCGCCGAAATTTTTTTGCCGAAATCGGCAACGGCAATTTGGCAACTCTTTCTTCGTTGCCGATTTCGGCAACGGCAAATCGGCAACAAAAATTCGGCAATTTCGGCTATTTCGGCAATCGGCAATTTGTTGCCGCACAGGCCTGCCCCAGACGAGCGGCCGACATCTCACGAGTTCCGCCGCCCGCTATGTTATAACGTGGTCCCTAGAGGGAGTGGTAGAAAGAGGAGACACAGCGCACAGTGAAATTAATATAGCTTGGAAATTGCAATGGAGACGGTTTTCGAAGAGAAAAAAAGAGAAGTGGGGTAATCGAGGGTGACAAAACTGAATTTCGCCTTCATTTTGCAAGAAAAGTCGTTTAGAAAAATATTTTTACGTTTATTCCCTCTAAAAAATTTTACGAAATTCTGGTAAACCTATTGCAAACTTTTCGAACTAAAGACCACATTTTTTGAGTGCGATCTTATCTGATGTAGAGTGAGAGAAAAATAATTAGGTACAAAGTTTTCAAATTGTTTCCCTTTTCATCCATTTCTCATTTTGAAACATTCCTTTCCTTCTTACCCATTCCTTGCCATTCAAACCCAAACACTTGTCCAC</canonical>
            <polymorphic>TTTCGGCAACGTTCGGCAACTCGGCAATTGCCGAAAAAAATTCCGGCAATTTCGGCAACTTTCGGCAATTTTTGGCAACAAAAGTTTTGCGTCTTTTTTTAGTAAAATCAATATGTAACTCACCTGAAAATGCTTCTATCAGGCTCAGAACTACAGAAAATGTGTTTCATAAGTTCCTTAAAGAAGTAATTACAAAAATTGGCAACTCAAGACCACATTTTTTATGCAAATTTGAAGCCCATTTTTAGATCCGATGCAAGTATTTTTGATGATTATTGGGACACATTTCCTCTAAAATTCACTCTGAGGGATGATGGTATTCAAAATTTGATTTTTCGAACTTCGAAATCATTTTTTTGACTAAATCTCTAAATTCAAAAAAATTTCAGTTGCCGAAATCGCCGAAATTTTTTTGCCGAAATCGGCAACGGCAATTTGGCAACTCTTTCTTCGTTGCCGATTTCGGCAACGGCAAATCGGCAACAAAAATTCGGCAATTRCGGCTATTTCGGCAATCGGCAATTTGTTGCCGCACAGGCCTGCCCCAGACGAGCGGCCGACATCTCACGAGTTCCGCCGCCCGCTATGTTATAACGTGGTCCCTAGAGGGAGTGGTAGAAAGAGGAGACACAGCGCACAGTGAAATTAATATAGCTTGGAAATTGCAATGGAGACGGTTTTCGAAGAGAAAAAAAGAGAAGTGGGGTAATCGAGGGTGACAAAACTGAATTTCGCCTTCATTTTGCAAGAAAAGTCGTTTAGAAAAATATTTTTACGTTTATTCCCTCTAAAAAATTTTACGAAATTCTGGTAAACCTATTGCAAACTTTTCGAACTAAAGACCACATTTTTTGAGTGCGATCTTATCTGATGTAGAGTGAGAGAAAAATAATTAGGTACAAAGTTTTCAAATTGTTTCCCTTTTCATCCATTTCTCATTTTGAAACATTCCTTTCCTTCTTACCCATTCCTTGCCATTCAAACCCAAACACTTGTCCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGTTTTCAAAAACAAGAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTGTCTCCTCTTTCTACCACTC</pcr_primer_p2>
		<pcr_amplicon_size>826</pcr_amplicon_size>
		<canonical_amplicon>TTCGGCTATTTCGGCAATCGGCAATTTGTTGCCGCACAGGCCTGCCCCAGACGAGCGGCCGACATCTCACGAGTTCCGCCGCCCGCTATGTTATAACGTGGTCCCTAGAGGGAGTGGTAGAAAGAGGAGACAC</canonical_amplicon>
		<polymorphic_amplicon>TRCGGCTATTTCGGCAATCGGCAATTTGTTGCCGCACAGGCCTGCCCCAGACGAGCGGCCGACATCTCACGAGTTCCGCCGCCCGCTATGTTATAACGTGGTCCCTAGAGGGAGTGGTAGAAAGAGGAGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33166</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>180063</contig_pos>
        <strand></strand>
        <context>CAGGAAAAAA[G/A]GRAAAAAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGATATTTTTGAACGCTTTTTAAACTAGTTCATTTCTTTTCAGGAAAAAA</left_flank>
        <right_flank>GAAAAAAGAAAAAATAATAGAACAAACAAATTTGATGTAATCCTCACAGG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCCCGTTAATCCGCAAATTCATTTCATGAAAGAGAAGAAGTTTCCCACCATTTCTGCCTACAACAACTCTGGCTAAATTATCGCTCGTTTGCATAATGTTATTCCTCAATCAACGCTCCCCTTGCCTTCTTCATCACCTTCTCTTTTCCTTTTCCGTGTGATGTTCCTACACCAAAGAGAAAAGAAGTGTTTATTCTCGCACGGGAGCGCCATAGTAGTACTGCCACCAGTGTACATTTTTCGCTGAGAGAGAACTACTCGGAACGAAAGATATCACTCTTTTCCTCACCATCATTACTATATATTATCATAAACTATGTACTAGTAAGATATATAGCTTTTCAGTTCTCTATATCTGCCAAAAGTGTCGACCTGTTCCTTCTTCCTCTCTCTTTATTTATTGTATATTCTTACTTTTATTGTCCACCTTCCGACAAAACCGACCATAGATATTTTTGAACGCTTTTTAAACTAGTTCATTTCTTTTCAGGAAAAAAGGAAAAAAGAAAAAATAATAGAACAAACAAATTTGATGTAATCCTCACAGGAAATTAGAACATGCTGCAAGATTTGAAACGTTTTTCTCTTTTTTCCTCCAATTTCCCCGGAAGGATAATGTTGCCTCATTCGTTTTGCGTCATTTGCTGCTGTTTAGAAGCAATGTGACTTTTGGTTGGAACTGTTGTATAGTTAGGGAATTCGAGAATCGCTTTAGATTAGTTTCAATTACAGTAATCGTTTTGGGCCCCCGGAAATTGATTGGGTTTTTTGTTCATTGCTTTTTTTGTTGGGTAGAATAGAAATATTCCGATAATGATGCTACCGGCCAAAATAAATCATAGTTTGATTTTTTCAGTGAAAACTAGTCAACTTTGTGCTCTGAAAACTTCAAAATAGATATAAACTTCATTTTTGTAGTCGACAACTTTTCTGTCAAATTCTATTGCTGTGAGATATGCTGTTTGAAACCAAAAAAAAAAATGCTGGAAATTACAATA</canonical>
            <polymorphic>ATTCCCGTTAATCCGCAAATTCATTTCATGAAAGAGAAGAAGTTTCCCACCATTTCTGCCTACAACAACTCTGGCTAAATTATCGCTCGTTTGCATAATGTTATTCCTCAATCAACGCTCCCCTTGCCTTCTTCATCACCTTCTCTTTTCCTTTTCCGTGTGATGTTCCTACACCAAAGAGAAAAGAAGTGTTTATTCTCGCACGGGAGCGCCATAGTAGTACTGCCACCAGTGTACATTTTTCGCTGAGAGAGAACTACTCGGAACGAAAGATATCACTCTTTTCCTCACCATCATTACTATATATTATCATAAACTATGTACTAGTAAGATATATAGCTTTTCAGTTCTCTATATCTGCCAAAAGTGTCGACCTGTTCCTTCTTCCTCTCTCTTTATTTATTGTATATTCTTACTTTTATTGTCCACCTTCCGACAAAACCGACCATAGATATTTTTGAACGCTTTTTAAACTAGTTCATTTCTTTTCAGGAAAAAARGAAAAAAGAAAAAATAATAGAACAAACAAATTTGATGTAATCCTCACAGGAAATTAGAACATGCTGCAAGATTTGAAACGTTTTTCTCTTTTTTCCTCCAATTTCCCCGGAAGGATAATGTTGCCTCATTCGTTTTGCGTCATTTGCTGCTGTTTAGAAGCAATGTGACTTTTGGTTGGAACTGTTGTATAGTTAGGGAATTCGAGAATCGCTTTAGATTAGTTTCAATTACAGTAATCGTTTTGGGCCCCCGGAAATTGATTGGGTTTTTTGTTCATTGCTTTTTTTGTTGGGTAGAATAGAAATATTCCGATAATGATGCTACCGGCCAAAATAAATCATAGTTTGATTTTTTCAGTGAAAACTAGTCAACTTTGTGCTCTGAAAACTTCAAAATAGATATAAACTTCATTTTTGTAGTCGACAACTTTTCTGTCAAATTCTATTGCTGTGAGATATGCTGTTTGAAACCAAAAAAAAAAATGCTGGAAATTACAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTCTCTATATCTGCCAAAAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGAGAAAAACGTTTCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAGTTCTCTATATCTGCCAAAAGTGTCGACCTGTTCCTTCTTCCTCTCTCTTTATTTATTGTATATTCTTACTTTTATTGTCCACCTTCCGACAAAACCGACCATAGATATTTTTGAACGCTTTTTAAACTAGTTCATTTCTTTTCAGGAAAAAAGGAAAAAAGAAAAAATAATAGAACAAACAAATTTGATGTAATCCTCACAGGAAATTAGAACATGCTGCAAGATTTGAAACGTTTTTCTCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CAGTTCTCTATATCTGCCAAAAGTGTCGACCTGTTCCTTCTTCCTCTCTCTTTATTTATTGTATATTCTTACTTTTATTGTCCACCTTCCGACAAAACCGACCATAGATATTTTTGAACGCTTTTTAAACTAGTTCATTTCTTTTCAGGAAAAAARGAAAAAAGAAAAAATAATAGAACAAACAAATTTGATGTAATCCTCACAGGAAATTAGAACATGCTGCAAGATTTGAAACGTTTTTCTCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33167</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>180065</contig_pos>
        <strand></strand>
        <context>GGAAAAAARG[A/G]AAAAAGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATTTTTGAACGCTTTTTAAACTAGTTCATTTCTTTTCAGGAAAAAAGG</left_flank>
        <right_flank>AAAAAGAAAAAATAATAGAACAAACAAATTTGATGTAATCCTCACAGGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCCGTTAATCCGCAAATTCATTTCATGAAAGAGAAGAAGTTTCCCACCATTTCTGCCTACAACAACTCTGGCTAAATTATCGCTCGTTTGCATAATGTTATTCCTCAATCAACGCTCCCCTTGCCTTCTTCATCACCTTCTCTTTTCCTTTTCCGTGTGATGTTCCTACACCAAAGAGAAAAGAAGTGTTTATTCTCGCACGGGAGCGCCATAGTAGTACTGCCACCAGTGTACATTTTTCGCTGAGAGAGAACTACTCGGAACGAAAGATATCACTCTTTTCCTCACCATCATTACTATATATTATCATAAACTATGTACTAGTAAGATATATAGCTTTTCAGTTCTCTATATCTGCCAAAAGTGTCGACCTGTTCCTTCTTCCTCTCTCTTTATTTATTGTATATTCTTACTTTTATTGTCCACCTTCCGACAAAACCGACCATAGATATTTTTGAACGCTTTTTAAACTAGTTCATTTCTTTTCAGGAAAAAAGGAAAAAAGAAAAAATAATAGAACAAACAAATTTGATGTAATCCTCACAGGAAATTAGAACATGCTGCAAGATTTGAAACGTTTTTCTCTTTTTTCCTCCAATTTCCCCGGAAGGATAATGTTGCCTCATTCGTTTTGCGTCATTTGCTGCTGTTTAGAAGCAATGTGACTTTTGGTTGGAACTGTTGTATAGTTAGGGAATTCGAGAATCGCTTTAGATTAGTTTCAATTACAGTAATCGTTTTGGGCCCCCGGAAATTGATTGGGTTTTTTGTTCATTGCTTTTTTTGTTGGGTAGAATAGAAATATTCCGATAATGATGCTACCGGCCAAAATAAATCATAGTTTGATTTTTTCAGTGAAAACTAGTCAACTTTGTGCTCTGAAAACTTCAAAATAGATATAAACTTCATTTTTGTAGTCGACAACTTTTCTGTCAAATTCTATTGCTGTGAGATATGCTGTTTGAAACCAAAAAAAAAAATGCTGGAAATTACAATATG</canonical>
            <polymorphic>TCCCGTTAATCCGCAAATTCATTTCATGAAAGAGAAGAAGTTTCCCACCATTTCTGCCTACAACAACTCTGGCTAAATTATCGCTCGTTTGCATAATGTTATTCCTCAATCAACGCTCCCCTTGCCTTCTTCATCACCTTCTCTTTTCCTTTTCCGTGTGATGTTCCTACACCAAAGAGAAAAGAAGTGTTTATTCTCGCACGGGAGCGCCATAGTAGTACTGCCACCAGTGTACATTTTTCGCTGAGAGAGAACTACTCGGAACGAAAGATATCACTCTTTTCCTCACCATCATTACTATATATTATCATAAACTATGTACTAGTAAGATATATAGCTTTTCAGTTCTCTATATCTGCCAAAAGTGTCGACCTGTTCCTTCTTCCTCTCTCTTTATTTATTGTATATTCTTACTTTTATTGTCCACCTTCCGACAAAACCGACCATAGATATTTTTGAACGCTTTTTAAACTAGTTCATTTCTTTTCAGGAAAAAAGGRAAAAAGAAAAAATAATAGAACAAACAAATTTGATGTAATCCTCACAGGAAATTAGAACATGCTGCAAGATTTGAAACGTTTTTCTCTTTTTTCCTCCAATTTCCCCGGAAGGATAATGTTGCCTCATTCGTTTTGCGTCATTTGCTGCTGTTTAGAAGCAATGTGACTTTTGGTTGGAACTGTTGTATAGTTAGGGAATTCGAGAATCGCTTTAGATTAGTTTCAATTACAGTAATCGTTTTGGGCCCCCGGAAATTGATTGGGTTTTTTGTTCATTGCTTTTTTTGTTGGGTAGAATAGAAATATTCCGATAATGATGCTACCGGCCAAAATAAATCATAGTTTGATTTTTTCAGTGAAAACTAGTCAACTTTGTGCTCTGAAAACTTCAAAATAGATATAAACTTCATTTTTGTAGTCGACAACTTTTCTGTCAAATTCTATTGCTGTGAGATATGCTGTTTGAAACCAAAAAAAAAAATGCTGGAAATTACAATATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTCTCTATATCTGCCAAAAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGAGAAAAACGTTTCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAGTTCTCTATATCTGCCAAAAGTGTCGACCTGTTCCTTCTTCCTCTCTCTTTATTTATTGTATATTCTTACTTTTATTGTCCACCTTCCGACAAAACCGACCATAGATATTTTTGAACGCTTTTTAAACTAGTTCATTTCTTTTCAGGAAAAAAGGAAAAAAGAAAAAATAATAGAACAAACAAATTTGATGTAATCCTCACAGGAAATTAGAACATGCTGCAAGATTTGAAACGTTTTTCTCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CAGTTCTCTATATCTGCCAAAAGTGTCGACCTGTTCCTTCTTCCTCTCTCTTTATTTATTGTATATTCTTACTTTTATTGTCCACCTTCCGACAAAACCGACCATAGATATTTTTGAACGCTTTTTAAACTAGTTCATTTCTTTTCAGGAAAAAAGGRAAAAAGAAAAAATAATAGAACAAACAAATTTGATGTAATCCTCACAGGAAATTAGAACATGCTGCAAGATTTGAAACGTTTTTCTCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33168</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>180545</contig_pos>
        <strand></strand>
        <context>CAAAAAAAAA[A/T]ATGCTGGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTGTCAAATTCTATTGCTGTGAGATATGCTGTTTGAAACCAAAAAAAAA</left_flank>
        <right_flank>ATGCTGGAAATTACAATATGAGAATTGTGCATTTTTAAAAACGGTTATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTTTCAGGAAAAAAGGAAAAAAGAAAAAATAATAGAACAAACAAATTTGATGTAATCCTCACAGGAAATTAGAACATGCTGCAAGATTTGAAACGTTTTTCTCTTTTTTCCTCCAATTTCCCCGGAAGGATAATGTTGCCTCATTCGTTTTGCGTCATTTGCTGCTGTTTAGAAGCAATGTGACTTTTGGTTGGAACTGTTGTATAGTTAGGGAATTCGAGAATCGCTTTAGATTAGTTTCAATTACAGTAATCGTTTTGGGCCCCCGGAAATTGATTGGGTTTTTTGTTCATTGCTTTTTTTGTTGGGTAGAATAGAAATATTCCGATAATGATGCTACCGGCCAAAATAAATCATAGTTTGATTTTTTCAGTGAAAACTAGTCAACTTTGTGCTCTGAAAACTTCAAAATAGATATAAACTTCATTTTTGTAGTCGACAACTTTTCTGTCAAATTCTATTGCTGTGAGATATGCTGTTTGAAACCAAAAAAAAAAATGCTGGAAATTACAATATGAGAATTGTGCATTTTTAAAAACGGTTATTTCGCTTTTTTGAATTTTCACAACAAAAATATATGAATTACAAAAATCGAGCTTTCGTTTTGTTCAGTATAAATTTGTAGAAAATTTGAAAAATATATGTCATGATATCACCAATGTTTTAGCAGTTGATAAATTTTTAATATCACTCATAGAAACCAAGATAATAGCGCTCAAAGTTAGCAGTTTAAGCTGGTTTCTATTAGAGGAAATACGGTTACCTTCTCCGATACTGTAGTTGAAAAGTTGAAAAAATACACAGATTTAGCGTTTATTCACTGAAACTATCAATTCTCTGTTTTTTCATCAGTAACAAATGATAATTTCCGACTGAACGTACTTTTTCCTATTTACAGTAATCCAAAAAAAATTACCACGTGCCCATTCAAAGTTTCACCCTAAAGTTCATTTTATTTTTTTTCGAAAATTCGATGATACACTCATGTTCAAAAATA</canonical>
            <polymorphic>TTCTTTTCAGGAAAAAAGGAAAAAAGAAAAAATAATAGAACAAACAAATTTGATGTAATCCTCACAGGAAATTAGAACATGCTGCAAGATTTGAAACGTTTTTCTCTTTTTTCCTCCAATTTCCCCGGAAGGATAATGTTGCCTCATTCGTTTTGCGTCATTTGCTGCTGTTTAGAAGCAATGTGACTTTTGGTTGGAACTGTTGTATAGTTAGGGAATTCGAGAATCGCTTTAGATTAGTTTCAATTACAGTAATCGTTTTGGGCCCCCGGAAATTGATTGGGTTTTTTGTTCATTGCTTTTTTTGTTGGGTAGAATAGAAATATTCCGATAATGATGCTACCGGCCAAAATAAATCATAGTTTGATTTTTTCAGTGAAAACTAGTCAACTTTGTGCTCTGAAAACTTCAAAATAGATATAAACTTCATTTTTGTAGTCGACAACTTTTCTGTCAAATTCTATTGCTGTGAGATATGCTGTTTGAAACCAAAAAAAAAWATGCTGGAAATTACAATATGAGAATTGTGCATTTTTAAAAACGGTTATTTCGCTTTTTTGAATTTTCACAACAAAAATATATGAATTACAAAAATCGAGCTTTCGTTTTGTTCAGTATAAATTTGTAGAAAATTTGAAAAATATATGTCATGATATCACCAATGTTTTAGCAGTTGATAAATTTTTAATATCACTCATAGAAACCAAGATAATAGCGCTCAAAGTTAGCAGTTTAAGCTGGTTTCTATTAGAGGAAATACGGTTACCTTCTCCGATACTGTAGTTGAAAAGTTGAAAAAATACACAGATTTAGCGTTTATTCACTGAAACTATCAATTCTCTGTTTTTTCATCAGTAACAAATGATAATTTCCGACTGAACGTACTTTTTCCTATTTACAGTAATCCAAAAAAAATTACCACGTGCCCATTCAAAGTTTCACCCTAAAGTTCATTTTATTTTTTTTCGAAAATTCGATGATACACTCATGTTCAAAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGTGAAAACTAGTCAACTTTGT</pcr_primer_p1>
		<pcr_primer_p2>TATACTGAACAAAACGAAAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCAGTGAAAACTAGTCAACTTTGTGCTCTGAAAACTTCAAAATAGATATAAACTTCATTTTTGTAGTCGACAACTTTTCTGTCAAATTCTATTGCTGTGAGATATGCTGTTTGAAACCAAAAAAAAAAATGCTGGAAATTACAATATGAGAATTGTGCATTTTTAAAAACGGTTATTTCGCTTTTTTGAATTTTCACAACAAAAATATATGAATTACAAAAATCGAGCTTTCGTTTTGTTCAGTATA</canonical_amplicon>
		<polymorphic_amplicon>TCAGTGAAAACTAGTCAACTTTGTGCTCTGAAAACTTCAAAATAGATATAAACTTCATTTTTGTAGTCGACAACTTTTCTGTCAAATTCTATTGCTGTGAGATATGCTGTTTGAAACCAAAAAAAAAWATGCTGGAAATTACAATATGAGAATTGTGCATTTTTAAAAACGGTTATTTCGCTTTTTTGAATTTTCACAACAAAAATATATGAATTACAAAAATCGAGCTTTCGTTTTGTTCAGTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33169</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>205382</contig_pos>
        <strand>+</strand>
        <context>CCTAATCATA[A/G]TTAAAAATCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATGACCTCACTTCAAAAATCTCTTTTCCCAAAAAAAGTTCCTAATCATA</left_flank>
        <right_flank>TTAAAAATCTATTTTCGCACAAAATGCAATTTTTGGTACTGAAACTGATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAATACTAAGAATTCAATTAATTTACATATTTCAGGCATTGTTTCAAAAAGCACACTTTTCCAGTTTTTGGAAAAATTCAAGTGGTGGAAAATATCGAGAAAAAAACTTGATAAAATGTCTGAAATGTTTTACTAAACTCTCAGTTTTATCCCTAATCAGGAGATGTCGTGCAATTGTTAGTATCAGAAATGTTCGAAATCGCCTTTCCCAAATTTTTCGTGAAGTCGAAAATTCTAATTTTCCAAATTTCCGGATTTTAGAGTATTCCGATTTTCCAAATTTTCGAATTTTAGAGTATTCCGATTTTGAGAATTCGAAATTTTTTTTGGATTTTCGGAATACTCTAGCTATGAAATATTCAGAATTTCAGAATTTTTGAACATTTTTCAAATTTTTAAATTTCAAAGAAACATTATGTTTTTTATTATAAAAACGTCAAAAACAGGTGATGACCTCACTTCAAAAATCTCTTTTCCCAAAAAAAGTTCCTAATCATAATTAAAAATCTATTTTCGCACAAAATGCAATTTTTGGTACTGAAACTGATAAAGCTCGGCTGAAACTGGCGAGCGAATTCTAAAATTCTTAACATCCCAATATGGATTCACAATATGTTGCGGTTGAGGGCCTTGTGAGGGTAATTGTGGGAGACTAACTTATCTTTCTTCAAAATCGAAGTCACAATTTTATACTACCCTGAAATCACAACGATCACATGATGACGTTATCAAGATTTTTTCAGGAAAATGTACAGAAAAAGACTAGTATGACGACGTCTTATGACTTCTTATGTCGGTCTCCAGAAATAGACAAAAACTTCTAATGACGCAAAAAAACTATAGTTTTGAAGAAGGAGCCAGAAGCGCGGTTTGACGTCTTCACTGCTCCATAGAAGCTCAATTAGTTGTATCTATACACCTCGCGCGCGCACTTCAAAGTGCGAAACTATAATTATAGTGGCAATGATGAAAAATAATATTTTGAAAAATGATGAGGAA</canonical>
            <polymorphic>GTAATACTAAGAATTCAATTAATTTACATATTTCAGGCATTGTTTCAAAAAGCACACTTTTCCAGTTTTTGGAAAAATTCAAGTGGTGGAAAATATCGAGAAAAAAACTTGATAAAATGTCTGAAATGTTTTACTAAACTCTCAGTTTTATCCCTAATCAGGAGATGTCGTGCAATTGTTAGTATCAGAAATGTTCGAAATCGCCTTTCCCAAATTTTTCGTGAAGTCGAAAATTCTAATTTTCCAAATTTCCGGATTTTAGAGTATTCCGATTTTCCAAATTTTCGAATTTTAGAGTATTCCGATTTTGAGAATTCGAAATTTTTTTTGGATTTTCGGAATACTCTAGCTATGAAATATTCAGAATTTCAGAATTTTTGAACATTTTTCAAATTTTTAAATTTCAAAGAAACATTATGTTTTTTATTATAAAAACGTCAAAAACAGGTGATGACCTCACTTCAAAAATCTCTTTTCCCAAAAAAAGTTCCTAATCATARTTAAAAATCTATTTTCGCACAAAATGCAATTTTTGGTACTGAAACTGATAAAGCTCGGCTGAAACTGGCGAGCGAATTCTAAAATTCTTAACATCCCAATATGGATTCACAATATGTTGCGGTTGAGGGCCTTGTGAGGGTAATTGTGGGAGACTAACTTATCTTTCTTCAAAATCGAAGTCACAATTTTATACTACCCTGAAATCACAACGATCACATGATGACGTTATCAAGATTTTTTCAGGAAAATGTACAGAAAAAGACTAGTATGACGACGTCTTATGACTTCTTATGTCGGTCTCCAGAAATAGACAAAAACTTCTAATGACGCAAAAAAACTATAGTTTTGAAGAAGGAGCCAGAAGCGCGGTTTGACGTCTTCACTGCTCCATAGAAGCTCAATTAGTTGTATCTATACACCTCGCGCGCGCACTTCAAAGTGCGAAACTATAATTATAGTGGCAATGATGAAAAATAATATTTTGAAAAATGATGAGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>216 99 98 59 55 51 49 47 45 43 39 33 29 25 19 19 11 9 8 8 8 8 7 6 5 4</canonical_bands>
                <polymorphic_bands>216 128 98 59 55 51 49 47 45 43 39 33 25 19 19 11 9 8 8 8 8 7 6 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGTGATGACCTCACTTCAA</pcr_primer_p1>
		<pcr_primer_p2>ATAAAATTGTGACTTCGATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGGTGATGACCTCACTTCAAAAATCTCTTTTCCCAAAAAAAGTTCCTAATCATAATTAAAAATCTATTTTCGCACAAAATGCAATTTTTGGTACTGAAACTGATAAAGCTCGGCTGAAACTGGCGAGCGAATTCTAAAATTCTTAACATCCCAATATGGATTCACAATATGTTGCGGTTGAGGGCCTTGTGAGGGTAATTGTGGGAGACTAACTTATCTTTCTTCAAAATCGAAGTCACAATTTTAT</canonical_amplicon>
		<polymorphic_amplicon>AGGTGATGACCTCACTTCAAAAATCTCTTTTCCCAAAAAAAGTTCCTAATCATARTTAAAAATCTATTTTCGCACAAAATGCAATTTTTGGTACTGAAACTGATAAAGCTCGGCTGAAACTGGCGAGCGAATTCTAAAATTCTTAACATCCCAATATGGATTCACAATATGTTGCGGTTGAGGGCCTTGTGAGGGTAATTGTGGGAGACTAACTTATCTTTCTTCAAAATCGAAGTCACAATTTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33170</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>208216</contig_pos>
        <strand>+</strand>
        <context>GGAAAAAAAT[C/T]AAGAGAGAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCATTTCTTGACAACTTCTGCAATTTGTACTAGTTTTTAGGGAAAAAAAT</left_flank>
        <right_flank>AAGAGAGAATATGGACATGACGGGAGAGCGACAGCTCAATTCTGTCTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGTTCATACGATGGATACGGCATGCAATGATACGGTCGTTGATGTGGTTACTGAGAGCTTGGCCACTGAAAGTAATTTTTTTTAAATTCTTCTCCTTTCAACATACATTTCGAGGATTTGGCGATCAGTTTCTGGAACTGGGTGACCTTTGTTTTGAATCAGAAAATCATGGATCCAGTTAGCCAAACAAGGCAATGGCTCCGCACCGTAACGAGCAACTTCCCATGGAACATTGACAAATATTGATCTGGAGACCCGAGCATTCAAATGTTGGGCAAGGATGAGAGCACTAAAAATGCATTTAAATATTATAGATTAAACGTAGAGATTTCTACTTGCCGCGTTTTATGATTGCCATTTTTGAATGCTTCGACATCCTCAGCACTGATTGGATCCTCGACCAGTGGAGGCAACGGTACTTCGCGGTTCAGTGGTGGAAAAGGATTATCCATTTCTTGACAACTTCTGCAATTTGTACTAGTTTTTAGGGAAAAAAATCAAGAGAGAATATGGACATGACGGGAGAGCGACAGCTCAATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATATATCATTCAATTAGAAAATTACCACGGTAGACGTATGGCTGACAGCCGTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTACCGCTATAAAAATTTTATGGCTCGTTGTATGCAAATGGAATAAAGACTGTGTGGGCTTCTTCTAGGGTGGGAGACCGAACGATGAGATGAAACAAAACCGAAATCTTACCATATAGTCTTTTTTGACGAAAAGATGGGAAACCGAAAATTTATGAGAAACGGTAAAGATGGGATTGTGCGACGAGATGAAAAAAGTAAATTCAAAAATTTGAATATTATTCCCAGTAAAAAATAAAAAAATAAGAACAGTGTAGAAGCAATGGGAACTGTTACCGTAATGCATTGTTTCTAGAAAATTGGGATGAGTCACTGGATC</canonical>
            <polymorphic>TCGTTCATACGATGGATACGGCATGCAATGATACGGTCGTTGATGTGGTTACTGAGAGCTTGGCCACTGAAAGTAATTTTTTTTAAATTCTTCTCCTTTCAACATACATTTCGAGGATTTGGCGATCAGTTTCTGGAACTGGGTGACCTTTGTTTTGAATCAGAAAATCATGGATCCAGTTAGCCAAACAAGGCAATGGCTCCGCACCGTAACGAGCAACTTCCCATGGAACATTGACAAATATTGATCTGGAGACCCGAGCATTCAAATGTTGGGCAAGGATGAGAGCACTAAAAATGCATTTAAATATTATAGATTAAACGTAGAGATTTCTACTTGCCGCGTTTTATGATTGCCATTTTTGAATGCTTCGACATCCTCAGCACTGATTGGATCCTCGACCAGTGGAGGCAACGGTACTTCGCGGTTCAGTGGTGGAAAAGGATTATCCATTTCTTGACAACTTCTGCAATTTGTACTAGTTTTTAGGGAAAAAAATYAAGAGAGAATATGGACATGACGGGAGAGCGACAGCTCAATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATATATCATTCAATTAGAAAATTACCACGGTAGACGTATGGCTGACAGCCGTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTACCGCTATAAAAATTTTATGGCTCGTTGTATGCAAATGGAATAAAGACTGTGTGGGCTTCTTCTAGGGTGGGAGACCGAACGATGAGATGAAACAAAACCGAAATCTTACCATATAGTCTTTTTTGACGAAAAGATGGGAAACCGAAAATTTATGAGAAACGGTAAAGATGGGATTGTGCGACGAGATGAAAAAAGTAAATTCAAAAATTTGAATATTATTCCCAGTAAAAAATAAAAAAATAAGAACAGTGTAGAAGCAATGGGAACTGTTACCGTAATGCATTGTTTCTAGAAAATTGGGATGAGTCACTGGATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>473 207 133 116 44 27</canonical_bands>
                <polymorphic_bands>517 207 133 116 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGATTATCCATTTCTTGACA</pcr_primer_p1>
		<pcr_primer_p2>GTACTGTTCCCAAAGTTCTTACA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAGGATTATCCATTTCTTGACAACTTCTGCAATTTGTACTAGTTTTTAGGGAAAAAAATCAAGAGAGAATATGGACATGACGGGAGAGCGACAGCTCAATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATATATCATTCAATTAGAAAATTACCACGGTAGACGTATGGCTGACAGCCGTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTAC</canonical_amplicon>
		<polymorphic_amplicon>AAGGATTATCCATTTCTTGACAACTTCTGCAATTTGTACTAGTTTTTAGGGAAAAAAATYAAGAGAGAATATGGACATGACGGGAGAGCGACAGCTCAATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATATATCATTCAATTAGAAAATTACCACGGTAGACGTATGGCTGACAGCCGTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33171</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>208241</contig_pos>
        <strand>+</strand>
        <context>ACATGACGGG[C/T]GAGCGACAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTACTAGTTTTTAGGGAAAAAAATCAAGAGAGAATATGGACATGACGGG</left_flank>
        <right_flank>GAGCGACAGCTCAATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATGATACGGTCGTTGATGTGGTTACTGAGAGCTTGGCCACTGAAAGTAATTTTTTTTAAATTCTTCTCCTTTCAACATACATTTCGAGGATTTGGCGATCAGTTTCTGGAACTGGGTGACCTTTGTTTTGAATCAGAAAATCATGGATCCAGTTAGCCAAACAAGGCAATGGCTCCGCACCGTAACGAGCAACTTCCCATGGAACATTGACAAATATTGATCTGGAGACCCGAGCATTCAAATGTTGGGCAAGGATGAGAGCACTAAAAATGCATTTAAATATTATAGATTAAACGTAGAGATTTCTACTTGCCGCGTTTTATGATTGCCATTTTTGAATGCTTCGACATCCTCAGCACTGATTGGATCCTCGACCAGTGGAGGCAACGGTACTTCGCGGTTCAGTGGTGGAAAAGGATTATCCATTTCTTGACAACTTCTGCAATTTGTACTAGTTTTTAGGGAAAAAAATCAAGAGAGAATATGGACATGACGGGAGAGCGACAGCTCAATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATATATCATTCAATTAGAAAATTACCACGGTAGACGTATGGCTGACAGCCGTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTACCGCTATAAAAATTTTATGGCTCGTTGTATGCAAATGGAATAAAGACTGTGTGGGCTTCTTCTAGGGTGGGAGACCGAACGATGAGATGAAACAAAACCGAAATCTTACCATATAGTCTTTTTTGACGAAAAGATGGGAAACCGAAAATTTATGAGAAACGGTAAAGATGGGATTGTGCGACGAGATGAAAAAAGTAAATTCAAAAATTTGAATATTATTCCCAGTAAAAAATAAAAAAATAAGAACAGTGTAGAAGCAATGGGAACTGTTACCGTAATGCATTGTTTCTAGAAAATTGGGATGAGTCACTGGATCTACAGAAACCCTCAAACGGTTTTCT</canonical>
            <polymorphic>CAATGATACGGTCGTTGATGTGGTTACTGAGAGCTTGGCCACTGAAAGTAATTTTTTTTAAATTCTTCTCCTTTCAACATACATTTCGAGGATTTGGCGATCAGTTTCTGGAACTGGGTGACCTTTGTTTTGAATCAGAAAATCATGGATCCAGTTAGCCAAACAAGGCAATGGCTCCGCACCGTAACGAGCAACTTCCCATGGAACATTGACAAATATTGATCTGGAGACCCGAGCATTCAAATGTTGGGCAAGGATGAGAGCACTAAAAATGCATTTAAATATTATAGATTAAACGTAGAGATTTCTACTTGCCGCGTTTTATGATTGCCATTTTTGAATGCTTCGACATCCTCAGCACTGATTGGATCCTCGACCAGTGGAGGCAACGGTACTTCGCGGTTCAGTGGTGGAAAAGGATTATCCATTTCTTGACAACTTCTGCAATTTGTACTAGTTTTTAGGGAAAAAAATCAAGAGAGAATATGGACATGACGGGYGAGCGACAGCTCAATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATATATCATTCAATTAGAAAATTACCACGGTAGACGTATGGCTGACAGCCGTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTACCGCTATAAAAATTTTATGGCTCGTTGTATGCAAATGGAATAAAGACTGTGTGGGCTTCTTCTAGGGTGGGAGACCGAACGATGAGATGAAACAAAACCGAAATCTTACCATATAGTCTTTTTTGACGAAAAGATGGGAAACCGAAAATTTATGAGAAACGGTAAAGATGGGATTGTGCGACGAGATGAAAAAAGTAAATTCAAAAATTTGAATATTATTCCCAGTAAAAAATAAAAAAATAAGAACAGTGTAGAAGCAATGGGAACTGTTACCGTAATGCATTGTTTCTAGAAAATTGGGATGAGTCACTGGATCTACAGAAACCCTCAAACGGTTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGATTATCCATTTCTTGACA</pcr_primer_p1>
		<pcr_primer_p2>GTACTGTTCCCAAAGTTCTTACA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAGGATTATCCATTTCTTGACAACTTCTGCAATTTGTACTAGTTTTTAGGGAAAAAAATCAAGAGAGAATATGGACATGACGGGAGAGCGACAGCTCAATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATATATCATTCAATTAGAAAATTACCACGGTAGACGTATGGCTGACAGCCGTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTAC</canonical_amplicon>
		<polymorphic_amplicon>AAGGATTATCCATTTCTTGACAACTTCTGCAATTTGTACTAGTTTTTAGGGAAAAAAATCAAGAGAGAATATGGACATGACGGGYGAGCGACAGCTCAATTCTGTCTCAATATTTTTTTCGCTCACTAAAATATATATCATTCAATTAGAAAATTACCACGGTAGACGTATGGCTGACAGCCGTCTGTTTAGTCTAGCAATTGATTTACAAATAGTCACATTTGTAAGAACTTTGGGAACAGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33172</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>217016</contig_pos>
        <strand>+</strand>
        <context>ggagattcta[A/G]tacaATGGCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGATACAGTGGCCCAAAGTTGGTTTGAAAGTTCGTTTGGGGGAGATTCTA</left_flank>
        <right_flank>TACAATGGCGACGGTAATTGTACAAAACGATAAATTATAGTAGTGGCGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCTTTAGGACACACAAGTTCAACTAGGAACCTTCATAGTTTTTTCACAAATTTCTTAGGATTACTGTAGAAAAAAACAAAGTTTTATGAGTGTCACAAGGAGTTTTTAAAGTGATTTTCATTTGGAATTTAGACTGCAATGAGTTTTTTGGCTTAGGAAACCTTATCATAACTGAAAATACTTGAGAAACTGGAAACAATAATAATCTATCTCAAGGTATTCATGAACTCGTGTACCGTATTTCTTCTTATAAAACGGCACTCGGATATTTTCAATTTGACCTCAATTATCTCGATTTCAACAGAATGACCTCGAGATGTGAACTTTATGCCGACATATCTCATTTTCAGTAAAATATATCAAAAAGTGGTCAACTAACAAAATTTTATTCATCATTCAAACAACATTTTGTCAGTTGATCTTTTTTTGATATCTATGACAGGAACCGAGATACAGTGGCCCAAAGTTGGTTTGAAAGTTCGTTTGGGGGAGATTCTATTACAATGGCGACGGTAATTGTACAAAACGATAAATTATAGTAGTGGCGTTTCATTGAAGGAAACACGAATGTTTGAATCTAGTGATCATTCATAAAAATGTTATACATTATCAGTAATAAAAAATGCTCCAATTTTCAAAAATCAAAAAAGGATGAGACAAGAATCCACCAACATTTTGAGTTACAGTAATCCCCCACATAGTTTCTACCGTTGTCAAACACAAACCAAATGTGAAAATTCCATTTCCTCAGATTCTTTTCTATAATCTAGATAGATTTTCTTCTTCTTCCTCATTTTTCAGTCCTTCATCTCTACACACCACTAATTGTACATCTCCCACCTATCAGCTTTTCAATCTCAAAAACCCATCCATTCAGTCACATCCTTTCCCATTATACAACTTTTTGCATCCTTTCTCTCCGAGCTCTTCTCGAAGATCACAGCCTGCAACAGTTGGTCATTCTACTAATCGCAGTGGGCCTTCCTATTCCTCCTTCCT</canonical>
            <polymorphic>CGCTTTAGGACACACAAGTTCAACTAGGAACCTTCATAGTTTTTTCACAAATTTCTTAGGATTACTGTAGAAAAAAACAAAGTTTTATGAGTGTCACAAGGAGTTTTTAAAGTGATTTTCATTTGGAATTTAGACTGCAATGAGTTTTTTGGCTTAGGAAACCTTATCATAACTGAAAATACTTGAGAAACTGGAAACAATAATAATCTATCTCAAGGTATTCATGAACTCGTGTACCGTATTTCTTCTTATAAAACGGCACTCGGATATTTTCAATTTGACCTCAATTATCTCGATTTCAACAGAATGACCTCGAGATGTGAACTTTATGCCGACATATCTCATTTTCAGTAAAATATATCAAAAAGTGGTCAACTAACAAAATTTTATTCATCATTCAAACAACATTTTGTCAGTTGATCTTTTTTTGATATCTATGACAGGAACCGAGATACAGTGGCCCAAAGTTGGTTTGAAAGTTCGTTTGGGGGAGATTCTARTACAATGGCGACGGTAATTGTACAAAACGATAAATTATAGTAGTGGCGTTTCATTGAAGGAAACACGAATGTTTGAATCTAGTGATCATTCATAAAAATGTTATACATTATCAGTAATAAAAAATGCTCCAATTTTCAAAAATCAAAAAAGGATGAGACAAGAATCCACCAACATTTTGAGTTACAGTAATCCCCCACATAGTTTCTACCGTTGTCAAACACAAACCAAATGTGAAAATTCCATTTCCTCAGATTCTTTTCTATAATCTAGATAGATTTTCTTCTTCTTCCTCATTTTTCAGTCCTTCATCTCTACACACCACTAATTGTACATCTCCCACCTATCAGCTTTTCAATCTCAAAAACCCATCCATTCAGTCACATCCTTTCCCATTATACAACTTTTTGCATCCTTTCTCTCCGAGCTCTTCTCGAAGATCACAGCCTGCAACAGTTGGTCATTCTACTAATCGCAGTGGGCCTTCCTATTCCTCCTTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACCTCAATTATCTCGATTTC</pcr_primer_p1>
		<pcr_primer_p2>AATGAAACGCCACTACTATAATTT</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>TGACCTCAATTATCTCGATTTCAACAGAATGACCTCGAGATGTGAACTTTATGCCGACATATCTCATTTTCAGTAAAATATATCAAAAAGTGGTCAACTAACAAAATTTTATTCATCATTCAAACAACATTTTGTCAGTTGATCTTTTTTTGATATCTATGACAGGAACCGAGATACAGTGGCCCAAAGTTGGTTTGAAAGTTCGTTTGGGGGAGATTCTATTACAATGGCGACGGTAATTGTACAAAACGATAAATTATAGTAGTGGCGTTTCATT</canonical_amplicon>
		<polymorphic_amplicon>TGACCTCAATTATCTCGATTTCAACAGAATGACCTCGAGATGTGAACTTTATGCCGACATATCTCATTTTCAGTAAAATATATCAAAAAGTGGTCAACTAACAAAATTTTATTCATCATTCAAACAACATTTTGTCAGTTGATCTTTTTTTGATATCTATGACAGGAACCGAGATACAGTGGCCCAAAGTTGGTTTGAAAGTTCGTTTGGGGGAGATTCTARTACAATGGCGACGGTAATTGTACAAAACGATAAATTATAGTAGTGGCGTTTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33173</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>217083</contig_pos>
        <strand>+</strand>
        <context>AAGGAAACAC[C/G]AATGTTTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTGTACAAAACGATAAATTATAGTAGTGGCGTTTCATTGAAGGAAACAC</left_flank>
        <right_flank>AATGTTTGAATCTAGTGATCATTCATAAAAATGTTATACATTATCAGTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAAAAAAACAAAGTTTTATGAGTGTCACAAGGAGTTTTTAAAGTGATTTTCATTTGGAATTTAGACTGCAATGAGTTTTTTGGCTTAGGAAACCTTATCATAACTGAAAATACTTGAGAAACTGGAAACAATAATAATCTATCTCAAGGTATTCATGAACTCGTGTACCGTATTTCTTCTTATAAAACGGCACTCGGATATTTTCAATTTGACCTCAATTATCTCGATTTCAACAGAATGACCTCGAGATGTGAACTTTATGCCGACATATCTCATTTTCAGTAAAATATATCAAAAAGTGGTCAACTAACAAAATTTTATTCATCATTCAAACAACATTTTGTCAGTTGATCTTTTTTTGATATCTATGACAGGAACCGAGATACAGTGGCCCAAAGTTGGTTTGAAAGTTCGTTTGGGGGAGATTCTATTACAATGGCGACGGTAATTGTACAAAACGATAAATTATAGTAGTGGCGTTTCATTGAAGGAAACACGAATGTTTGAATCTAGTGATCATTCATAAAAATGTTATACATTATCAGTAATAAAAAATGCTCCAATTTTCAAAAATCAAAAAAGGATGAGACAAGAATCCACCAACATTTTGAGTTACAGTAATCCCCCACATAGTTTCTACCGTTGTCAAACACAAACCAAATGTGAAAATTCCATTTCCTCAGATTCTTTTCTATAATCTAGATAGATTTTCTTCTTCTTCCTCATTTTTCAGTCCTTCATCTCTACACACCACTAATTGTACATCTCCCACCTATCAGCTTTTCAATCTCAAAAACCCATCCATTCAGTCACATCCTTTCCCATTATACAACTTTTTGCATCCTTTCTCTCCGAGCTCTTCTCGAAGATCACAGCCTGCAACAGTTGGTCATTCTACTAATCGCAGTGGGCCTTCCTATTCCTCCTTCCTCCTCCACATTGTACCTCCCTCCCCCCATTTTCTTCAGCTGCCATTCACGTGCTCTTCCCGCCACTCC</canonical>
            <polymorphic>TAGAAAAAAACAAAGTTTTATGAGTGTCACAAGGAGTTTTTAAAGTGATTTTCATTTGGAATTTAGACTGCAATGAGTTTTTTGGCTTAGGAAACCTTATCATAACTGAAAATACTTGAGAAACTGGAAACAATAATAATCTATCTCAAGGTATTCATGAACTCGTGTACCGTATTTCTTCTTATAAAACGGCACTCGGATATTTTCAATTTGACCTCAATTATCTCGATTTCAACAGAATGACCTCGAGATGTGAACTTTATGCCGACATATCTCATTTTCAGTAAAATATATCAAAAAGTGGTCAACTAACAAAATTTTATTCATCATTCAAACAACATTTTGTCAGTTGATCTTTTTTTGATATCTATGACAGGAACCGAGATACAGTGGCCCAAAGTTGGTTTGAAAGTTCGTTTGGGGGAGATTCTATTACAATGGCGACGGTAATTGTACAAAACGATAAATTATAGTAGTGGCGTTTCATTGAAGGAAACACSAATGTTTGAATCTAGTGATCATTCATAAAAATGTTATACATTATCAGTAATAAAAAATGCTCCAATTTTCAAAAATCAAAAAAGGATGAGACAAGAATCCACCAACATTTTGAGTTACAGTAATCCCCCACATAGTTTCTACCGTTGTCAAACACAAACCAAATGTGAAAATTCCATTTCCTCAGATTCTTTTCTATAATCTAGATAGATTTTCTTCTTCTTCCTCATTTTTCAGTCCTTCATCTCTACACACCACTAATTGTACATCTCCCACCTATCAGCTTTTCAATCTCAAAAACCCATCCATTCAGTCACATCCTTTCCCATTATACAACTTTTTGCATCCTTTCTCTCCGAGCTCTTCTCGAAGATCACAGCCTGCAACAGTTGGTCATTCTACTAATCGCAGTGGGCCTTCCTATTCCTCCTTCCTCCTCCACATTGTACCTCCCTCCCCCCATTTTCTTCAGCTGCCATTCACGTGCTCTTCCCGCCACTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGGTAATTGTACAAAACGATAA</pcr_primer_p1>
		<pcr_primer_p2>AATCTGAGGAAATGGAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACGGTAATTGTACAAAACGATAAATTATAGTAGTGGCGTTTCATTGAAGGAAACACGAATGTTTGAATCTAGTGATCATTCATAAAAATGTTATACATTATCAGTAATAAAAAATGCTCCAATTTTCAAAAATCAAAAAAGGATGAGACAAGAATCCACCAACATTTTGAGTTACAGTAATCCCCCACATAGTTTCTACCGTTGTCAAACACAAACCAAATGTGAAAATTCCATTTCCTCAGATT</canonical_amplicon>
		<polymorphic_amplicon>ACGGTAATTGTACAAAACGATAAATTATAGTAGTGGCGTTTCATTGAAGGAAACACSAATGTTTGAATCTAGTGATCATTCATAAAAATGTTATACATTATCAGTAATAAAAAATGCTCCAATTTTCAAAAATCAAAAAAGGATGAGACAAGAATCCACCAACATTTTGAGTTACAGTAATCCCCCACATAGTTTCTACCGTTGTCAAACACAAACCAAATGTGAAAATTCCATTTCCTCAGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33174</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>222948</contig_pos>
        <strand>+</strand>
        <context>TTAGGCTGGR[A/G]TGGAAGCTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTACATATAGCTTATGAAATAAACTGAAAAAAAAGATTTTTAGGCTGGA</left_flank>
        <right_flank>TGGAAGCTGTCATCGAGGATCAAGTCACCAACCGGTTCTCTGCAGCTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCTACTGATCTTCCTGGCAGTCACCGGCAAGACTTTGGGACTTCGTGAGCTTTATGTGGAAACATTGATTCGAATTTTCGAGGTAAGTTTTTGGTTGGGGAGGAGTGAAATGCGGGAGGAGAGCAAAGATTACTCTGATAACCCACTTATCATTATCATTTTTTCAGTGGGGAGCCACGCTCAGCGAAGAATCTGATGTCGAGGAAGACTCGGTTATTGAAGAAGATGAATTCCCGGCACAACACAAGAAAATCCGGCGGTCTTCATCCTCATCCGACCTTGGTGAGTTTCTTTTTTTTTAATTTTTTGATCAATACATTTTTCAGGCATCATCAATCGAGAGAAATCTGACATCATCGACGCCAAACTGCATGAGACGAATGTAACGGAATCAAAACAATCAACAGTCAGCGTTCTTGTCGATGATACTCTGGATTTTATTACGGTATTACATATAGCTTATGAAATAAACTGAAAAAAAAGATTTTTAGGCTGGAATGGAAGCTGTCATCGAGGATCAAGTCACCAACCGGTTCTCTGCAGCTCAATTACCATCATGGAATTTGCTAAGTCGCACCAAATTTACGTTCCATTTTCTTAAGTGAGTATTTGAAAATTTGAAAAAATGGAAAAAGTTGAAGAACATTGAAATAATCAAGTCAAAAGACATCAACACATACAGCACTGGTCAATAAAGTATACAAAAACTCATTCTTCAGTTGATTTTTGGCCAGTTTGATCATTTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATTG</canonical>
            <polymorphic>CTTCTACTGATCTTCCTGGCAGTCACCGGCAAGACTTTGGGACTTCGTGAGCTTTATGTGGAAACATTGATTCGAATTTTCGAGGTAAGTTTTTGGTTGGGGAGGAGTGAAATGCGGGAGGAGAGCAAAGATTACTCTGATAACCCACTTATCATTATCATTTTTTCAGTGGGGAGCCACGCTCAGCGAAGAATCTGATGTCGAGGAAGACTCGGTTATTGAAGAAGATGAATTCCCGGCACAACACAAGAAAATCCGGCGGTCTTCATCCTCATCCGACCTTGGTGAGTTTCTTTTTTTTTAATTTTTTGATCAATACATTTTTCAGGCATCATCAATCGAGAGAAATCTGACATCATCGACGCCAAACTGCATGAGACGAATGTAACGGAATCAAAACAATCAACAGTCAGCGTTCTTGTCGATGATACTCTGGATTTTATTACGGTATTACATATAGCTTATGAAATAAACTGAAAAAAAAGATTTTTAGGCTGGARTGGAAGCTGTCATCGAGGATCAAGTCACCAACCGGTTCTCTGCAGCTCAATTACCATCATGGAATTTGCTAAGTCGCACCAAATTTACGTTCCATTTTCTTAAGTGAGTATTTGAAAATTTGAAAAAATGGAAAAAGTTGAAGAACATTGAAATAATCAAGTCAAAAGACATCAACACATACAGCACTGGTCAATAAAGTATACAAAAACTCATTCTTCAGTTGATTTTTGGCCAGTTTGATCATTTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGATGATACTCTGGATTTTATT</pcr_primer_p1>
		<pcr_primer_p2>TGATGTCTTTTGACTTGATTATTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TCGATGATACTCTGGATTTTATTACGGTATTACATATAGCTTATGAAATAAACTGAAAAAAAAGATTTTTAGGCTGGAATGGAAGCTGTCATCGAGGATCAAGTCACCAACCGGTTCTCTGCAGCTCAATTACCATCATGGAATTTGCTAAGTCGCACCAAATTTACGTTCCATTTTCTTAAGTGAGTATTTGAAAATTTGAAAAAATGGAAAAAGTTGAAGAACATTGAAATAATCAAGTCAAAAGACATCA</canonical_amplicon>
		<polymorphic_amplicon>TCGATGATACTCTGGATTTTATTACGGTATTACATATAGCTTATGAAATAAACTGAAAAAAAAGATTTTTAGGCTGGARTGGAAGCTGTCATCGAGGATCAAGTCACCAACCGGTTCTCTGCAGCTCAATTACCATCATGGAATTTGCTAAGTCGCACCAAATTTACGTTCCATTTTCTTAAGTGAGTATTTGAAAATTTGAAAAAATGGAAAAAGTTGAAGAACATTGAAATAATCAAGTCAAAAGACATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33175</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>223679</contig_pos>
        <strand>+</strand>
        <context>CAATTTTTCA[A/G]RCTCACAGCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCA</left_flank>
        <right_flank>ACTCACAGCTCACAGCGTCACATTTGACACATTGAGATTTTCAAAGCCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCAGTTTGATCATTTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATTGGTACTATACATGAGAGAGTTCGGATAACTTGAGCAATTTTTATAAACATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAGACTCACAGCTCACAGCGTCACATTTGACACATTGAGATTTTCAAAGCCATGAAAACTGATTATTTAGTAAACCATACCAAAACTTATAAAATGAACAAGTTTAATAGATAAGTTTTGTTGTTAGAAAGACTACTAAAATTTGGAAAACATTTTCTTTAAAAAATCTCTTTTCCAGCTGGCAGCTGACCGCACTCTGGATCGCTGGGTTCATGTTCCGCTACTACGTGCTTGTCCCATGCAGAATTGCTCTGTTCGTCATTGCAATCGTACTGATGATCGTTTCAACATCTATCATCGGATTGATCCCACATGCAAAGTGAGTTTTCTGCCTAAATTCGAAATCCCCGAAATTGATTAATAATGCGGCCAAATAAAGCTAAAAAACTGAACGTTTTGCAAATTTTGCATTGTTCCAGAACCCGAAAGTTCCTGAACCGAAGATGTATGTTGATGTGCATGAGAATCTACTCTCGCGCATTCTCAAGTGTTATTCGTTTCCA</canonical>
            <polymorphic>GCCAGTTTGATCATTTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATTGGTACTATACATGAGAGAGTTCGGATAACTTGAGCAATTTTTATAAACATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCARACTCACAGCTCACAGCGTCACATTTGACACATTGAGATTTTCAAAGCCATGAAAACTGATTATTTAGTAAACCATACCAAAACTTATAAAATGAACAAGTTTAATAGATAAGTTTTGTTGTTAGAAAGACTACTAAAATTTGGAAAACATTTTCTTTAAAAAATCTCTTTTCCAGCTGGCAGCTGACCGCACTCTGGATCGCTGGGTTCATGTTCCGCTACTACGTGCTTGTCCCATGCAGAATTGCTCTGTTCGTCATTGCAATCGTACTGATGATCGTTTCAACATCTATCATCGGATTGATCCCACATGCAAAGTGAGTTTTCTGCCTAAATTCGAAATCCCCGAAATTGATTAATAATGCGGCCAAATAAAGCTAAAAAACTGAACGTTTTGCAAATTTTGCATTGTTCCAGAACCCGAAAGTTCCTGAACCGAAGATGTATGTTGATGTGCATGAGAATCTACTCTCGCGCATTCTCAAGTGTTATTCGTTTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>500 461 39</canonical_bands>
                <polymorphic_bands>961 39</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>298 203 189 122 85 84 19</canonical_bands>
                <polymorphic_bands>317 203 189 122 85 84</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGATATTGCGAGCTAAATTAC</pcr_primer_p1>
		<pcr_primer_p2>ATAATCAGTTTTCATGGCTTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAGACTCACAGCTCACAGCGTCACATTTGACACATTGAGATTTTCAAAGCCATGAAAACTGATTAT</canonical_amplicon>
		<polymorphic_amplicon>CATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCARACTCACAGCTCACAGCGTCACATTTGACACATTGAGATTTTCAAAGCCATGAAAACTGATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33176</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>223680</contig_pos>
        <strand>+</strand>
        <context>AATTTTTCAR[A/G]CTCACAGCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAG</left_flank>
        <right_flank>CTCACAGCTCACAGCGTCACATTTGACACATTGAGATTTTCAAAGCCATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGTTTGATCATTTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATTGGTACTATACATGAGAGAGTTCGGATAACTTGAGCAATTTTTATAAACATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAGACTCACAGCTCACAGCGTCACATTTGACACATTGAGATTTTCAAAGCCATGAAAACTGATTATTTAGTAAACCATACCAAAACTTATAAAATGAACAAGTTTAATAGATAAGTTTTGTTGTTAGAAAGACTACTAAAATTTGGAAAACATTTTCTTTAAAAAATCTCTTTTCCAGCTGGCAGCTGACCGCACTCTGGATCGCTGGGTTCATGTTCCGCTACTACGTGCTTGTCCCATGCAGAATTGCTCTGTTCGTCATTGCAATCGTACTGATGATCGTTTCAACATCTATCATCGGATTGATCCCACATGCAAAGTGAGTTTTCTGCCTAAATTCGAAATCCCCGAAATTGATTAATAATGCGGCCAAATAAAGCTAAAAAACTGAACGTTTTGCAAATTTTGCATTGTTCCAGAACCCGAAAGTTCCTGAACCGAAGATGTATGTTGATGTGCATGAGAATCTACTCTCGCGCATTCTCAAGTGTTATTCGTTTCCAC</canonical>
            <polymorphic>CCAGTTTGATCATTTCCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATTGGTACTATACATGAGAGAGTTCGGATAACTTGAGCAATTTTTATAAACATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAGRCTCACAGCTCACAGCGTCACATTTGACACATTGAGATTTTCAAAGCCATGAAAACTGATTATTTAGTAAACCATACCAAAACTTATAAAATGAACAAGTTTAATAGATAAGTTTTGTTGTTAGAAAGACTACTAAAATTTGGAAAACATTTTCTTTAAAAAATCTCTTTTCCAGCTGGCAGCTGACCGCACTCTGGATCGCTGGGTTCATGTTCCGCTACTACGTGCTTGTCCCATGCAGAATTGCTCTGTTCGTCATTGCAATCGTACTGATGATCGTTTCAACATCTATCATCGGATTGATCCCACATGCAAAGTGAGTTTTCTGCCTAAATTCGAAATCCCCGAAATTGATTAATAATGCGGCCAAATAAAGCTAAAAAACTGAACGTTTTGCAAATTTTGCATTGTTCCAGAACCCGAAAGTTCCTGAACCGAAGATGTATGTTGATGTGCATGAGAATCTACTCTCGCGCATTCTCAAGTGTTATTCGTTTCCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>499 461 40</canonical_bands>
                <polymorphic_bands>960 40</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>298 204 189 121 85 84 19</canonical_bands>
                <polymorphic_bands>317 204 189 121 85 84</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGATATTGCGAGCTAAATTAC</pcr_primer_p1>
		<pcr_primer_p2>ATAATCAGTTTTCATGGCTTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAGACTCACAGCTCACAGCGTCACATTTGACACATTGAGATTTTCAAAGCCATGAAAACTGATTAT</canonical_amplicon>
		<polymorphic_amplicon>CATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAGRCTCACAGCTCACAGCGTCACATTTGACACATTGAGATTTTCAAAGCCATGAAAACTGATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33177</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>223695</contig_pos>
        <strand>+</strand>
        <context>CAGCTCACWG[A/T]GTCACATTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATATGAATGCTTCTGAAAAGAGCCAATTTTTCAGACTCACAGCTCACAG</left_flank>
        <right_flank>GTCACATTTGACACATTGAGATTTTCAAAGCCATGAAAACTGATTATTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATTGGTACTATACATGAGAGAGTTCGGATAACTTGAGCAATTTTTATAAACATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAGACTCACAGCTCACAGCGTCACATTTGACACATTGAGATTTTCAAAGCCATGAAAACTGATTATTTAGTAAACCATACCAAAACTTATAAAATGAACAAGTTTAATAGATAAGTTTTGTTGTTAGAAAGACTACTAAAATTTGGAAAACATTTTCTTTAAAAAATCTCTTTTCCAGCTGGCAGCTGACCGCACTCTGGATCGCTGGGTTCATGTTCCGCTACTACGTGCTTGTCCCATGCAGAATTGCTCTGTTCGTCATTGCAATCGTACTGATGATCGTTTCAACATCTATCATCGGATTGATCCCACATGCAAAGTGAGTTTTCTGCCTAAATTCGAAATCCCCGAAATTGATTAATAATGCGGCCAAATAAAGCTAAAAAACTGAACGTTTTGCAAATTTTGCATTGTTCCAGAACCCGAAAGTTCCTGAACCGAAGATGTATGTTGATGTGCATGAGAATCTACTCTCGCGCATTCTCAAGTGTTATTCGTTTCCACGATAAAGAGAATCGA</canonical>
            <polymorphic>CCAGAAGTCTGGAGATTGGCGGTCGATTTTCCGGTGAAAAAAAAACTTGAAAAAAAACCGAGGTCTTCAAAAAATTGGCAAATCGCTGAAAAACTAGGATATTTCAGAAGTTCTATGACTGCGAAGTTAGTAAACAAAACTCCAAAAATTTTGAAGCAATGGGAAACTGTGCAACCAAGCTCCAGGGTTCTGAAAATACTCAAAAAGGTCAAAAATCTACTGAAAAATATGTTTTTGTACATCTTTTAGATTGGTACTATACATGAGAGAGTTCGGATAACTTGAGCAATTTTTATAAACATGATATTGCGAGCTAAATTACAAAAATACTTGTTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAGACTCACAGCTCACAGWGTCACATTTGACACATTGAGATTTTCAAAGCCATGAAAACTGATTATTTAGTAAACCATACCAAAACTTATAAAATGAACAAGTTTAATAGATAAGTTTTGTTGTTAGAAAGACTACTAAAATTTGGAAAACATTTTCTTTAAAAAATCTCTTTTCCAGCTGGCAGCTGACCGCACTCTGGATCGCTGGGTTCATGTTCCGCTACTACGTGCTTGTCCCATGCAGAATTGCTCTGTTCGTCATTGCAATCGTACTGATGATCGTTTCAACATCTATCATCGGATTGATCCCACATGCAAAGTGAGTTTTCTGCCTAAATTCGAAATCCCCGAAATTGATTAATAATGCGGCCAAATAAAGCTAAAAAACTGAACGTTTTGCAAATTTTGCATTGTTCCAGAACCCGAAAGTTCCTGAACCGAAGATGTATGTTGATGTGCATGAGAATCTACTCTCGCGCATTCTCAAGTGTTATTCGTTTCCACGATAAAGAGAATCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATCGCAACCTTACAATATCTC</pcr_primer_p1>
		<pcr_primer_p2>TGTTCATTTTATAAGTTTTGGTATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAGACTCACAGCTCACAGCGTCACATTTGACACATTGAGATTTTCAAAGCCATGAAAACTGATTATTTAGTAAACCATACCAAAACTTATAAAATGAACA</canonical_amplicon>
		<polymorphic_amplicon>TTATCGCAACCTTACAATATCTCAAGATACTGAAATTTCCCAAAAACCCCAAATGGATGCATCAACATAGAAACACAACTGAACTCAATTGGAAACTGCCAAGACTTGATGGCTAAAATATGAATGCTTCTGAAAAGAGCCAATTTTTCAGACTCACAGCTCACAGWGTCACATTTGACACATTGAGATTTTCAAAGCCATGAAAACTGATTATTTAGTAAACCATACCAAAACTTATAAAATGAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33178</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>224854</contig_pos>
        <strand>+</strand>
        <context>AGAACAGTTT[C/T]GAGAAAACGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTTGAAGAGAGAACGGGTGAGTATTTAGCTTGGAAAAAAAGAACAGTTT</left_flank>
        <right_flank>GAGAAAACGTGCATTCTAATTTTTATCTTGGTGGAGCTATTAACTTGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAGAGGAGAGGCTGGAGATAGAAAACAAGTCATGAATAGGTGAGTTTTTGACTGCAGAAGTTGTTTTTCTGACTCGATCCTTTCCCAGAATGCGTGAACATGTTGAGGATGAAAACAAGCTACCGATCATCATCTTCCCCGAGGGAACATGCATCAATAACACTTCCGTGATGATGTTCAAAAAGGGATCATTTGAGATCGGCTCCACAATCTACCCAATCGCTGTCAAATACGATACCCGTCTCACTGATGCCTTCTGGAACAGCAGTGCTCAATCTTACGGAAGATATTTGTGGAGTATGATGACTTCTTGGGCGATCATTTGTGACGTTTGGTATCTGCCACCAATGACAAGAGGAGATGGTGAAGATTCTATTTCGTTTGCAAAGAGAGTGAAGCGAGCAATTGCTAAAAAGGGAGGATTGATTGATTTGGAGTGGGATGGAGCGTTGAAGAGAGAACGGGTGAGTATTTAGCTTGGAAAAAAAGAACAGTTTCGAGAAAACGTGCATTCTAATTTTTATCTTGGTGGAGCTATTAACTTGTTTTCAACCAGTAGAAAAATATAAAAGGAAGCTCTCAATTTTGGAAAAACCGAAAGCATTTGCTATCAATTGGATAACATGTCGAAACGAGCTGGTAACAGCTTCTTTGAGCCTCAATATTTTCGGAACAATTGAATATGATTTGATGGAAATCGAGAAGAAGTTTTTTAAATATGATTTTTTAAAATGAAAAACTGTACTTTACATAAAAGGTGTAGTCAGGAATGTTCGAAATCGCCTTTTCGGGTTGTATCGGGATATCCAAAAATTCTGGTTTGTTTTATTTCGGAAATTCAGAATTTTGAAATATTCCGATTTTGAAAATTTCGAAATCTCAGAATCATCGGAATATTCCGATTTTTGTAAAAAAAAAACCACCCATTCAAAAGTTTTTGGAATTTTCGAAATTTGGAATTCTGTTCCGAACATCCCTGGTTCTAGACCATGAAGTTG</canonical>
            <polymorphic>GAGAGAGGAGAGGCTGGAGATAGAAAACAAGTCATGAATAGGTGAGTTTTTGACTGCAGAAGTTGTTTTTCTGACTCGATCCTTTCCCAGAATGCGTGAACATGTTGAGGATGAAAACAAGCTACCGATCATCATCTTCCCCGAGGGAACATGCATCAATAACACTTCCGTGATGATGTTCAAAAAGGGATCATTTGAGATCGGCTCCACAATCTACCCAATCGCTGTCAAATACGATACCCGTCTCACTGATGCCTTCTGGAACAGCAGTGCTCAATCTTACGGAAGATATTTGTGGAGTATGATGACTTCTTGGGCGATCATTTGTGACGTTTGGTATCTGCCACCAATGACAAGAGGAGATGGTGAAGATTCTATTTCGTTTGCAAAGAGAGTGAAGCGAGCAATTGCTAAAAAGGGAGGATTGATTGATTTGGAGTGGGATGGAGCGTTGAAGAGAGAACGGGTGAGTATTTAGCTTGGAAAAAAAGAACAGTTTYGAGAAAACGTGCATTCTAATTTTTATCTTGGTGGAGCTATTAACTTGTTTTCAACCAGTAGAAAAATATAAAAGGAAGCTCTCAATTTTGGAAAAACCGAAAGCATTTGCTATCAATTGGATAACATGTCGAAACGAGCTGGTAACAGCTTCTTTGAGCCTCAATATTTTCGGAACAATTGAATATGATTTGATGGAAATCGAGAAGAAGTTTTTTAAATATGATTTTTTAAAATGAAAAACTGTACTTTACATAAAAGGTGTAGTCAGGAATGTTCGAAATCGCCTTTTCGGGTTGTATCGGGATATCCAAAAATTCTGGTTTGTTTTATTTCGGAAATTCAGAATTTTGAAATATTCCGATTTTGAAAATTTCGAAATCTCAGAATCATCGGAATATTCCGATTTTTGTAAAAAAAAAACCACCCATTCAAAAGTTTTTGGAATTTTCGAAATTTGGAATTCTGTTCCGAACATCCCTGGTTCTAGACCATGAAGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>423 130 98 77 76 75 71 50</canonical_bands>
                <polymorphic_bands>553 98 77 76 75 71 50</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>241 226 201 184 66 34 33 15</canonical_bands>
                <polymorphic_bands>442 226 184 66 34 33 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGGAGATGGTGAAGATTCTAT</pcr_primer_p1>
		<pcr_primer_p2>TTGAGAGCTTCCTTTTATATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>AGAGGAGATGGTGAAGATTCTATTTCGTTTGCAAAGAGAGTGAAGCGAGCAATTGCTAAAAAGGGAGGATTGATTGATTTGGAGTGGGATGGAGCGTTGAAGAGAGAACGGGTGAGTATTTAGCTTGGAAAAAAAGAACAGTTTCGAGAAAACGTGCATTCTAATTTTTATCTTGGTGGAGCTATTAACTTGTTTTCAACCAGTAGAAAAATATAAAAGGAAGCTCTCAA</canonical_amplicon>
		<polymorphic_amplicon>AGAGGAGATGGTGAAGATTCTATTTCGTTTGCAAAGAGAGTGAAGCGAGCAATTGCTAAAAAGGGAGGATTGATTGATTTGGAGTGGGATGGAGCGTTGAAGAGAGAACGGGTGAGTATTTAGCTTGGAAAAAAAGAACAGTTTYGAGAAAACGTGCATTCTAATTTTTATCTTGGTGGAGCTATTAACTTGTTTTCAACCAGTAGAAAAATATAAAAGGAAGCTCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33179</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>225137</contig_pos>
        <strand></strand>
        <context>tgttcgaaat[C/T]gccttttcgg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGAAAAACTGTACTTTACATAAAAGGTGTAGTCAGGAATGTTCGAAAT</left_flank>
        <right_flank>GCCTTTTCGGGTTGTATCGGGATATCCAAAAATTCTGGTTTGTTTTATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAGATATTTGTGGAGTATGATGACTTCTTGGGCGATCATTTGTGACGTTTGGTATCTGCCACCAATGACAAGAGGAGATGGTGAAGATTCTATTTCGTTTGCAAAGAGAGTGAAGCGAGCAATTGCTAAAAAGGGAGGATTGATTGATTTGGAGTGGGATGGAGCGTTGAAGAGAGAACGGGTGAGTATTTAGCTTGGAAAAAAAGAACAGTTTCGAGAAAACGTGCATTCTAATTTTTATCTTGGTGGAGCTATTAACTTGTTTTCAACCAGTAGAAAAATATAAAAGGAAGCTCTCAATTTTGGAAAAACCGAAAGCATTTGCTATCAATTGGATAACATGTCGAAACGAGCTGGTAACAGCTTCTTTGAGCCTCAATATTTTCGGAACAATTGAATATGATTTGATGGAAATCGAGAAGAAGTTTTTTAAATATGATTTTTTAAAATGAAAAACTGTACTTTACATAAAAGGTGTAGTCAGGAATGTTCGAAATCGCCTTTTCGGGTTGTATCGGGATATCCAAAAATTCTGGTTTGTTTTATTTCGGAAATTCAGAATTTTGAAATATTCCGATTTTGAAAATTTCGAAATCTCAGAATCATCGGAATATTCCGATTTTTGTAAAAAAAAAACCACCCATTCAAAAGTTTTTGGAATTTTCGAAATTTGGAATTCTGTTCCGAACATCCCTGGTTCTAGACCATGAAGTTGTTGAGGCGAGAAAAATCAACCAAAAATATTTTTCCGCTTTCTACTTGGCTAGTGACATTACATATGTGAAGGACAGATTTTCAAACAGTAACATCTTGTAGTACTGACCGACTTGCTTCATTTAAATGTTAAAATATCAAAAAATTGGTCTGGCTTATTGCATGGTTGTCAATACGCTTTTCGATTCTCACTTATCAATCACCTTATCAGTTTTCCAGGTATCAAGCAAACTAGTAACACTGCAACAAAAACTCTACTTTGAACGTCTTGCTCGTACCACCAC</canonical>
            <polymorphic>GGAAGATATTTGTGGAGTATGATGACTTCTTGGGCGATCATTTGTGACGTTTGGTATCTGCCACCAATGACAAGAGGAGATGGTGAAGATTCTATTTCGTTTGCAAAGAGAGTGAAGCGAGCAATTGCTAAAAAGGGAGGATTGATTGATTTGGAGTGGGATGGAGCGTTGAAGAGAGAACGGGTGAGTATTTAGCTTGGAAAAAAAGAACAGTTTCGAGAAAACGTGCATTCTAATTTTTATCTTGGTGGAGCTATTAACTTGTTTTCAACCAGTAGAAAAATATAAAAGGAAGCTCTCAATTTTGGAAAAACCGAAAGCATTTGCTATCAATTGGATAACATGTCGAAACGAGCTGGTAACAGCTTCTTTGAGCCTCAATATTTTCGGAACAATTGAATATGATTTGATGGAAATCGAGAAGAAGTTTTTTAAATATGATTTTTTAAAATGAAAAACTGTACTTTACATAAAAGGTGTAGTCAGGAATGTTCGAAATYGCCTTTTCGGGTTGTATCGGGATATCCAAAAATTCTGGTTTGTTTTATTTCGGAAATTCAGAATTTTGAAATATTCCGATTTTGAAAATTTCGAAATCTCAGAATCATCGGAATATTCCGATTTTTGTAAAAAAAAAACCACCCATTCAAAAGTTTTTGGAATTTTCGAAATTTGGAATTCTGTTCCGAACATCCCTGGTTCTAGACCATGAAGTTGTTGAGGCGAGAAAAATCAACCAAAAATATTTTTCCGCTTTCTACTTGGCTAGTGACATTACATATGTGAAGGACAGATTTTCAAACAGTAACATCTTGTAGTACTGACCGACTTGCTTCATTTAAATGTTAAAATATCAAAAAATTGGTCTGGCTTATTGCATGGTTGTCAATACGCTTTTCGATTCTCACTTATCAATCACCTTATCAGTTTTCCAGGTATCAAGCAAACTAGTAACACTGCAACAAAAACTCTACTTTGAACGTCTTGCTCGTACCACCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGGAAATCGAGAAGAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>CCTCAACAACTTCATGGTCT</pcr_primer_p2>
		<pcr_amplicon_size>314</pcr_amplicon_size>
		<canonical_amplicon>ATGGAAATCGAGAAGAAGTTTTTTAAATATGATTTTTTAAAATGAAAAACTGTACTTTACATAAAAGGTGTAGTCAGGAATGTTCGAAATCGCCTTTTCGGGTTGTATCGGGATATCCAAAAATTCTGGTTTGTTTTATTTCGGAAATTCAGAATTTTGAAATATTCCGATTTTGAAAATTTCGAAATCTCAGAATCATCGGAATATTCCGATTTTTGTAAAAAAAAAACCACCCATTCAAAAGTTTTTGGAATTTTCGAAATTTGGAATTCTGTTCCGAACATCCCTGGTTCTAGACCATGAAGTTGTTGAGG</canonical_amplicon>
		<polymorphic_amplicon>ATGGAAATCGAGAAGAAGTTTTTTAAATATGATTTTTTAAAATGAAAAACTGTACTTTACATAAAAGGTGTAGTCAGGAATGTTCGAAATYGCCTTTTCGGGTTGTATCGGGATATCCAAAAATTCTGGTTTGTTTTATTTCGGAAATTCAGAATTTTGAAATATTCCGATTTTGAAAATTTCGAAATCTCAGAATCATCGGAATATTCCGATTTTTGTAAAAAAAAAACCACCCATTCAAAAGTTTTTGGAATTTTCGAAATTTGGAATTCTGTTCCGAACATCCCTGGTTCTAGACCATGAAGTTGTTGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33180</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>225175</contig_pos>
        <strand></strand>
        <context>aaaaattctg[G/A]tttktyttat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATGTTCGAAATCGCCTTTTCGGGTTGTATCGGGATATCCAAAAATTCTG</left_flank>
        <right_flank>TTTGTTTTATTTCGGAAATTCAGAATTTTGAAATATTCCGATTTTGAAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTGTGACGTTTGGTATCTGCCACCAATGACAAGAGGAGATGGTGAAGATTCTATTTCGTTTGCAAAGAGAGTGAAGCGAGCAATTGCTAAAAAGGGAGGATTGATTGATTTGGAGTGGGATGGAGCGTTGAAGAGAGAACGGGTGAGTATTTAGCTTGGAAAAAAAGAACAGTTTCGAGAAAACGTGCATTCTAATTTTTATCTTGGTGGAGCTATTAACTTGTTTTCAACCAGTAGAAAAATATAAAAGGAAGCTCTCAATTTTGGAAAAACCGAAAGCATTTGCTATCAATTGGATAACATGTCGAAACGAGCTGGTAACAGCTTCTTTGAGCCTCAATATTTTCGGAACAATTGAATATGATTTGATGGAAATCGAGAAGAAGTTTTTTAAATATGATTTTTTAAAATGAAAAACTGTACTTTACATAAAAGGTGTAGTCAGGAATGTTCGAAATCGCCTTTTCGGGTTGTATCGGGATATCCAAAAATTCTGGTTTGTTTTATTTCGGAAATTCAGAATTTTGAAATATTCCGATTTTGAAAATTTCGAAATCTCAGAATCATCGGAATATTCCGATTTTTGTAAAAAAAAAACCACCCATTCAAAAGTTTTTGGAATTTTCGAAATTTGGAATTCTGTTCCGAACATCCCTGGTTCTAGACCATGAAGTTGTTGAGGCGAGAAAAATCAACCAAAAATATTTTTCCGCTTTCTACTTGGCTAGTGACATTACATATGTGAAGGACAGATTTTCAAACAGTAACATCTTGTAGTACTGACCGACTTGCTTCATTTAAATGTTAAAATATCAAAAAATTGGTCTGGCTTATTGCATGGTTGTCAATACGCTTTTCGATTCTCACTTATCAATCACCTTATCAGTTTTCCAGGTATCAAGCAAACTAGTAACACTGCAACAAAAACTCTACTTTGAACGTCTTGCTCGTACCACCACTCTGAACTCGATGCTCGAAGAAAAATCCAGCGACATTT</canonical>
            <polymorphic>CATTTGTGACGTTTGGTATCTGCCACCAATGACAAGAGGAGATGGTGAAGATTCTATTTCGTTTGCAAAGAGAGTGAAGCGAGCAATTGCTAAAAAGGGAGGATTGATTGATTTGGAGTGGGATGGAGCGTTGAAGAGAGAACGGGTGAGTATTTAGCTTGGAAAAAAAGAACAGTTTCGAGAAAACGTGCATTCTAATTTTTATCTTGGTGGAGCTATTAACTTGTTTTCAACCAGTAGAAAAATATAAAAGGAAGCTCTCAATTTTGGAAAAACCGAAAGCATTTGCTATCAATTGGATAACATGTCGAAACGAGCTGGTAACAGCTTCTTTGAGCCTCAATATTTTCGGAACAATTGAATATGATTTGATGGAAATCGAGAAGAAGTTTTTTAAATATGATTTTTTAAAATGAAAAACTGTACTTTACATAAAAGGTGTAGTCAGGAATGTTCGAAATCGCCTTTTCGGGTTGTATCGGGATATCCAAAAATTCTGRTTTGTTTTATTTCGGAAATTCAGAATTTTGAAATATTCCGATTTTGAAAATTTCGAAATCTCAGAATCATCGGAATATTCCGATTTTTGTAAAAAAAAAACCACCCATTCAAAAGTTTTTGGAATTTTCGAAATTTGGAATTCTGTTCCGAACATCCCTGGTTCTAGACCATGAAGTTGTTGAGGCGAGAAAAATCAACCAAAAATATTTTTCCGCTTTCTACTTGGCTAGTGACATTACATATGTGAAGGACAGATTTTCAAACAGTAACATCTTGTAGTACTGACCGACTTGCTTCATTTAAATGTTAAAATATCAAAAAATTGGTCTGGCTTATTGCATGGTTGTCAATACGCTTTTCGATTCTCACTTATCAATCACCTTATCAGTTTTCCAGGTATCAAGCAAACTAGTAACACTGCAACAAAAACTCTACTTTGAACGTCTTGCTCGTACCACCACTCTGAACTCGATGCTCGAAGAAAAATCCAGCGACATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGGAAATCGAGAAGAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>CCTCAACAACTTCATGGTCT</pcr_primer_p2>
		<pcr_amplicon_size>314</pcr_amplicon_size>
		<canonical_amplicon>ATGGAAATCGAGAAGAAGTTTTTTAAATATGATTTTTTAAAATGAAAAACTGTACTTTACATAAAAGGTGTAGTCAGGAATGTTCGAAATCGCCTTTTCGGGTTGTATCGGGATATCCAAAAATTCTGGTTTGTTTTATTTCGGAAATTCAGAATTTTGAAATATTCCGATTTTGAAAATTTCGAAATCTCAGAATCATCGGAATATTCCGATTTTTGTAAAAAAAAAACCACCCATTCAAAAGTTTTTGGAATTTTCGAAATTTGGAATTCTGTTCCGAACATCCCTGGTTCTAGACCATGAAGTTGTTGAGG</canonical_amplicon>
		<polymorphic_amplicon>ATGGAAATCGAGAAGAAGTTTTTTAAATATGATTTTTTAAAATGAAAAACTGTACTTTACATAAAAGGTGTAGTCAGGAATGTTCGAAATCGCCTTTTCGGGTTGTATCGGGATATCCAAAAATTCTGRTTTGTTTTATTTCGGAAATTCAGAATTTTGAAATATTCCGATTTTGAAAATTTCGAAATCTCAGAATCATCGGAATATTCCGATTTTTGTAAAAAAAAAACCACCCATTCAAAAGTTTTTGGAATTTTCGAAATTTGGAATTCTGTTCCGAACATCCCTGGTTCTAGACCATGAAGTTGTTGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33181</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>225179</contig_pos>
        <strand></strand>
        <context>attctgrttt[G/T]tyttatttcg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCGAAATCGCCTTTTCGGGTTGTATCGGGATATCCAAAAATTCTGGTTT</left_flank>
        <right_flank>TTTTATTTCGGAAATTCAGAATTTTGAAATATTCCGATTTTGAAAATTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGACGTTTGGTATCTGCCACCAATGACAAGAGGAGATGGTGAAGATTCTATTTCGTTTGCAAAGAGAGTGAAGCGAGCAATTGCTAAAAAGGGAGGATTGATTGATTTGGAGTGGGATGGAGCGTTGAAGAGAGAACGGGTGAGTATTTAGCTTGGAAAAAAAGAACAGTTTCGAGAAAACGTGCATTCTAATTTTTATCTTGGTGGAGCTATTAACTTGTTTTCAACCAGTAGAAAAATATAAAAGGAAGCTCTCAATTTTGGAAAAACCGAAAGCATTTGCTATCAATTGGATAACATGTCGAAACGAGCTGGTAACAGCTTCTTTGAGCCTCAATATTTTCGGAACAATTGAATATGATTTGATGGAAATCGAGAAGAAGTTTTTTAAATATGATTTTTTAAAATGAAAAACTGTACTTTACATAAAAGGTGTAGTCAGGAATGTTCGAAATCGCCTTTTCGGGTTGTATCGGGATATCCAAAAATTCTGGTTTGTTTTATTTCGGAAATTCAGAATTTTGAAATATTCCGATTTTGAAAATTTCGAAATCTCAGAATCATCGGAATATTCCGATTTTTGTAAAAAAAAAACCACCCATTCAAAAGTTTTTGGAATTTTCGAAATTTGGAATTCTGTTCCGAACATCCCTGGTTCTAGACCATGAAGTTGTTGAGGCGAGAAAAATCAACCAAAAATATTTTTCCGCTTTCTACTTGGCTAGTGACATTACATATGTGAAGGACAGATTTTCAAACAGTAACATCTTGTAGTACTGACCGACTTGCTTCATTTAAATGTTAAAATATCAAAAAATTGGTCTGGCTTATTGCATGGTTGTCAATACGCTTTTCGATTCTCACTTATCAATCACCTTATCAGTTTTCCAGGTATCAAGCAAACTAGTAACACTGCAACAAAAACTCTACTTTGAACGTCTTGCTCGTACCACCACTCTGAACTCGATGCTCGAAGAAAAATCCAGCGACATTTTGAA</canonical>
            <polymorphic>TGTGACGTTTGGTATCTGCCACCAATGACAAGAGGAGATGGTGAAGATTCTATTTCGTTTGCAAAGAGAGTGAAGCGAGCAATTGCTAAAAAGGGAGGATTGATTGATTTGGAGTGGGATGGAGCGTTGAAGAGAGAACGGGTGAGTATTTAGCTTGGAAAAAAAGAACAGTTTCGAGAAAACGTGCATTCTAATTTTTATCTTGGTGGAGCTATTAACTTGTTTTCAACCAGTAGAAAAATATAAAAGGAAGCTCTCAATTTTGGAAAAACCGAAAGCATTTGCTATCAATTGGATAACATGTCGAAACGAGCTGGTAACAGCTTCTTTGAGCCTCAATATTTTCGGAACAATTGAATATGATTTGATGGAAATCGAGAAGAAGTTTTTTAAATATGATTTTTTAAAATGAAAAACTGTACTTTACATAAAAGGTGTAGTCAGGAATGTTCGAAATCGCCTTTTCGGGTTGTATCGGGATATCCAAAAATTCTGGTTTKTTTTATTTCGGAAATTCAGAATTTTGAAATATTCCGATTTTGAAAATTTCGAAATCTCAGAATCATCGGAATATTCCGATTTTTGTAAAAAAAAAACCACCCATTCAAAAGTTTTTGGAATTTTCGAAATTTGGAATTCTGTTCCGAACATCCCTGGTTCTAGACCATGAAGTTGTTGAGGCGAGAAAAATCAACCAAAAATATTTTTCCGCTTTCTACTTGGCTAGTGACATTACATATGTGAAGGACAGATTTTCAAACAGTAACATCTTGTAGTACTGACCGACTTGCTTCATTTAAATGTTAAAATATCAAAAAATTGGTCTGGCTTATTGCATGGTTGTCAATACGCTTTTCGATTCTCACTTATCAATCACCTTATCAGTTTTCCAGGTATCAAGCAAACTAGTAACACTGCAACAAAAACTCTACTTTGAACGTCTTGCTCGTACCACCACTCTGAACTCGATGCTCGAAGAAAAATCCAGCGACATTTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGGAAATCGAGAAGAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>CCTCAACAACTTCATGGTCT</pcr_primer_p2>
		<pcr_amplicon_size>314</pcr_amplicon_size>
		<canonical_amplicon>ATGGAAATCGAGAAGAAGTTTTTTAAATATGATTTTTTAAAATGAAAAACTGTACTTTACATAAAAGGTGTAGTCAGGAATGTTCGAAATCGCCTTTTCGGGTTGTATCGGGATATCCAAAAATTCTGGTTTGTTTTATTTCGGAAATTCAGAATTTTGAAATATTCCGATTTTGAAAATTTCGAAATCTCAGAATCATCGGAATATTCCGATTTTTGTAAAAAAAAAACCACCCATTCAAAAGTTTTTGGAATTTTCGAAATTTGGAATTCTGTTCCGAACATCCCTGGTTCTAGACCATGAAGTTGTTGAGG</canonical_amplicon>
		<polymorphic_amplicon>ATGGAAATCGAGAAGAAGTTTTTTAAATATGATTTTTTAAAATGAAAAACTGTACTTTACATAAAAGGTGTAGTCAGGAATGTTCGAAATCGCCTTTTCGGGTTGTATCGGGATATCCAAAAATTCTGGTTTKTTTTATTTCGGAAATTCAGAATTTTGAAATATTCCGATTTTGAAAATTTCGAAATCTCAGAATCATCGGAATATTCCGATTTTTGTAAAAAAAAAACCACCCATTCAAAAGTTTTTGGAATTTTCGAAATTTGGAATTCTGTTCCGAACATCCCTGGTTCTAGACCATGAAGTTGTTGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33182</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>225181</contig_pos>
        <strand></strand>
        <context>tctgrtttkt[T/C]ttatttcgga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CGAAATCGCCTTTTCGGGTTGTATCGGGATATCCAAAAATTCTGGTTTGT</left_flank>
        <right_flank>TTATTTCGGAAATTCAGAATTTTGAAATATTCCGATTTTGAAAATTTCGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACGTTTGGTATCTGCCACCAATGACAAGAGGAGATGGTGAAGATTCTATTTCGTTTGCAAAGAGAGTGAAGCGAGCAATTGCTAAAAAGGGAGGATTGATTGATTTGGAGTGGGATGGAGCGTTGAAGAGAGAACGGGTGAGTATTTAGCTTGGAAAAAAAGAACAGTTTCGAGAAAACGTGCATTCTAATTTTTATCTTGGTGGAGCTATTAACTTGTTTTCAACCAGTAGAAAAATATAAAAGGAAGCTCTCAATTTTGGAAAAACCGAAAGCATTTGCTATCAATTGGATAACATGTCGAAACGAGCTGGTAACAGCTTCTTTGAGCCTCAATATTTTCGGAACAATTGAATATGATTTGATGGAAATCGAGAAGAAGTTTTTTAAATATGATTTTTTAAAATGAAAAACTGTACTTTACATAAAAGGTGTAGTCAGGAATGTTCGAAATCGCCTTTTCGGGTTGTATCGGGATATCCAAAAATTCTGGTTTGTTTTATTTCGGAAATTCAGAATTTTGAAATATTCCGATTTTGAAAATTTCGAAATCTCAGAATCATCGGAATATTCCGATTTTTGTAAAAAAAAAACCACCCATTCAAAAGTTTTTGGAATTTTCGAAATTTGGAATTCTGTTCCGAACATCCCTGGTTCTAGACCATGAAGTTGTTGAGGCGAGAAAAATCAACCAAAAATATTTTTCCGCTTTCTACTTGGCTAGTGACATTACATATGTGAAGGACAGATTTTCAAACAGTAACATCTTGTAGTACTGACCGACTTGCTTCATTTAAATGTTAAAATATCAAAAAATTGGTCTGGCTTATTGCATGGTTGTCAATACGCTTTTCGATTCTCACTTATCAATCACCTTATCAGTTTTCCAGGTATCAAGCAAACTAGTAACACTGCAACAAAAACTCTACTTTGAACGTCTTGCTCGTACCACCACTCTGAACTCGATGCTCGAAGAAAAATCCAGCGACATTTTGAACA</canonical>
            <polymorphic>TGACGTTTGGTATCTGCCACCAATGACAAGAGGAGATGGTGAAGATTCTATTTCGTTTGCAAAGAGAGTGAAGCGAGCAATTGCTAAAAAGGGAGGATTGATTGATTTGGAGTGGGATGGAGCGTTGAAGAGAGAACGGGTGAGTATTTAGCTTGGAAAAAAAGAACAGTTTCGAGAAAACGTGCATTCTAATTTTTATCTTGGTGGAGCTATTAACTTGTTTTCAACCAGTAGAAAAATATAAAAGGAAGCTCTCAATTTTGGAAAAACCGAAAGCATTTGCTATCAATTGGATAACATGTCGAAACGAGCTGGTAACAGCTTCTTTGAGCCTCAATATTTTCGGAACAATTGAATATGATTTGATGGAAATCGAGAAGAAGTTTTTTAAATATGATTTTTTAAAATGAAAAACTGTACTTTACATAAAAGGTGTAGTCAGGAATGTTCGAAATCGCCTTTTCGGGTTGTATCGGGATATCCAAAAATTCTGGTTTGTYTTATTTCGGAAATTCAGAATTTTGAAATATTCCGATTTTGAAAATTTCGAAATCTCAGAATCATCGGAATATTCCGATTTTTGTAAAAAAAAAACCACCCATTCAAAAGTTTTTGGAATTTTCGAAATTTGGAATTCTGTTCCGAACATCCCTGGTTCTAGACCATGAAGTTGTTGAGGCGAGAAAAATCAACCAAAAATATTTTTCCGCTTTCTACTTGGCTAGTGACATTACATATGTGAAGGACAGATTTTCAAACAGTAACATCTTGTAGTACTGACCGACTTGCTTCATTTAAATGTTAAAATATCAAAAAATTGGTCTGGCTTATTGCATGGTTGTCAATACGCTTTTCGATTCTCACTTATCAATCACCTTATCAGTTTTCCAGGTATCAAGCAAACTAGTAACACTGCAACAAAAACTCTACTTTGAACGTCTTGCTCGTACCACCACTCTGAACTCGATGCTCGAAGAAAAATCCAGCGACATTTTGAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGGAAATCGAGAAGAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>CCTCAACAACTTCATGGTCT</pcr_primer_p2>
		<pcr_amplicon_size>314</pcr_amplicon_size>
		<canonical_amplicon>ATGGAAATCGAGAAGAAGTTTTTTAAATATGATTTTTTAAAATGAAAAACTGTACTTTACATAAAAGGTGTAGTCAGGAATGTTCGAAATCGCCTTTTCGGGTTGTATCGGGATATCCAAAAATTCTGGTTTGTTTTATTTCGGAAATTCAGAATTTTGAAATATTCCGATTTTGAAAATTTCGAAATCTCAGAATCATCGGAATATTCCGATTTTTGTAAAAAAAAAACCACCCATTCAAAAGTTTTTGGAATTTTCGAAATTTGGAATTCTGTTCCGAACATCCCTGGTTCTAGACCATGAAGTTGTTGAGG</canonical_amplicon>
		<polymorphic_amplicon>ATGGAAATCGAGAAGAAGTTTTTTAAATATGATTTTTTAAAATGAAAAACTGTACTTTACATAAAAGGTGTAGTCAGGAATGTTCGAAATCGCCTTTTCGGGTTGTATCGGGATATCCAAAAATTCTGGTTTGTYTTATTTCGGAAATTCAGAATTTTGAAATATTCCGATTTTGAAAATTTCGAAATCTCAGAATCATCGGAATATTCCGATTTTTGTAAAAAAAAAACCACCCATTCAAAAGTTTTTGGAATTTTCGAAATTTGGAATTCTGTTCCGAACATCCCTGGTTCTAGACCATGAAGTTGTTGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33183</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>227974</contig_pos>
        <strand>+</strand>
        <context>TTGCAAGTAT[C/G]GATATATCTA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCGGGCCTTGACCAACTTTTTGAAAGCCCGGCACGGCCCGTTGCAAGTAT</left_flank>
        <right_flank>GATATATCTATACAAACGAACCCCACAAATTGTCAGTTTCATCAAGTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTCTGAAATCGACTTTTCTGAAACATTTTGTATTGAAATCATTAGTTGCGAAATTATTAGTTCTAAAACGTCCGGTTGCAAAATGATGAAATGATATATCCATACTTGCAAAAATCGTTGAAGGCCCGGAAAGGAATTTTTGATCGAAATTTCTCAAACAAAAATGTTTTTTGGTAAATTCTTGAAATTTTTTTAAACAAAAACAATTAGTTTTTGAGAAAAAAGTGTTATTTTACTTCAAAAATGCAATTTTCAGTCCGATCCCACATCCGGAAAAAAGTAAGCAAACATTTTTTATTTTTATAATTTTGTTTAAGCATTGAAAATTTGATACTTACAATTCAGCTCAAAATTAGATGCTAATTCAACGTTTTTCCAAAAAAAAAGAATTATTTTTCCTAAATTTGGAAGCTGGCCAAAACTGTCCGGGCCTTCCGGGCCGGGCCGGGCCTTGACCAACTTTTTGAAAGCCCGGCACGGCCCGTTGCAAGTATGGATATATCTATACAAACGAACCCCACAAATTGTCAGTTTCATCAAGTCGATCTTCCGAAATTTTCGAAAAACTTCGGAATTCAACAGAATTCATATTTTTGAAAGTCCCATTACAAAGTATCCCTTTTGGAATAGAAACAGTATCTAGACTGGCCGGAAAAACTAAAACATATTTCTATTTTTGTGAAAATATTCAGAAAAAAAAAGTGAAAAATTGTTACTTCAACGATAACAACCAATGCCGAGAATTTTCTGGAAACGATTGGGCTTCAGAAAAATTCCGGCAGCTCAAAAACACAATGGCGTTTTTTCAAATTTTCCAGAACTTTACCAGGAGGAAACAAAGTAGAATTTCAACAAAGATTGAGACGTTAACAATGATATAAACCAAATATCAGAGCCTCACTCAGATTAGAAAATTTCAAAGCCTGGAGTCCTGGAGATCATGATCTACCGATATGAGAAGTGGCTTTATAAACTTTCAACAGTTAAAAATGACA</canonical>
            <polymorphic>TTTTTTTCTGAAATCGACTTTTCTGAAACATTTTGTATTGAAATCATTAGTTGCGAAATTATTAGTTCTAAAACGTCCGGTTGCAAAATGATGAAATGATATATCCATACTTGCAAAAATCGTTGAAGGCCCGGAAAGGAATTTTTGATCGAAATTTCTCAAACAAAAATGTTTTTTGGTAAATTCTTGAAATTTTTTTAAACAAAAACAATTAGTTTTTGAGAAAAAAGTGTTATTTTACTTCAAAAATGCAATTTTCAGTCCGATCCCACATCCGGAAAAAAGTAAGCAAACATTTTTTATTTTTATAATTTTGTTTAAGCATTGAAAATTTGATACTTACAATTCAGCTCAAAATTAGATGCTAATTCAACGTTTTTCCAAAAAAAAAGAATTATTTTTCCTAAATTTGGAAGCTGGCCAAAACTGTCCGGGCCTTCCGGGCCGGGCCGGGCCTTGACCAACTTTTTGAAAGCCCGGCACGGCCCGTTGCAAGTATSGATATATCTATACAAACGAACCCCACAAATTGTCAGTTTCATCAAGTCGATCTTCCGAAATTTTCGAAAAACTTCGGAATTCAACAGAATTCATATTTTTGAAAGTCCCATTACAAAGTATCCCTTTTGGAATAGAAACAGTATCTAGACTGGCCGGAAAAACTAAAACATATTTCTATTTTTGTGAAAATATTCAGAAAAAAAAAGTGAAAAATTGTTACTTCAACGATAACAACCAATGCCGAGAATTTTCTGGAAACGATTGGGCTTCAGAAAAATTCCGGCAGCTCAAAAACACAATGGCGTTTTTTCAAATTTTCCAGAACTTTACCAGGAGGAAACAAAGTAGAATTTCAACAAAGATTGAGACGTTAACAATGATATAAACCAAATATCAGAGCCTCACTCAGATTAGAAAATTTCAAAGCCTGGAGTCCTGGAGATCATGATCTACCGATATGAGAAGTGGCTTTATAAACTTTCAACAGTTAAAAATGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGCAAAATGATGAAATGATA</pcr_primer_p1>
		<pcr_primer_p2>AGATCGACTTGATGAAACTGAC</pcr_primer_p2>
		<pcr_amplicon_size>474</pcr_amplicon_size>
		<canonical_amplicon>GTTGCAAAATGATGAAATGATATATCCATACTTGCAAAAATCGTTGAAGGCCCGGAAAGGAATTTTTGATCGAAATTTCTCAAACAAAAATGTTTTTTGGTAAATTCTTGAAATTTTTTTAAACAAAAACAATTAGTTTTTGAGAAAAAAGTGTTATTTTACTTCAAAAATGCAATTTTCAGTCCGATCCCACATCCGGAAAAAAGTAAGCAAACATTTTTTATTTTTATAATTTTGTTTAAGCATTGAAAATTTGATACTTACAATTCAGCTCAAAATTAGATGCTAATTCAACGTTTTTCCAAAAAAAAAGAATTATTTTTCCTAAATTTGGAAGCTGGCCAAAACTGTCCGGGCCTTCCGGGCCGGGCCGGGCCTTGACCAACTTTTTGAAAGCCCGGCACGGCCCGTTGCAAGTATGGATATATCTATACAAACGAACCCCACAAATTGTCAGTTTCATCAAGTCGATCT</canonical_amplicon>
		<polymorphic_amplicon>GTTGCAAAATGATGAAATGATATATCCATACTTGCAAAAATCGTTGAAGGCCCGGAAAGGAATTTTTGATCGAAATTTCTCAAACAAAAATGTTTTTTGGTAAATTCTTGAAATTTTTTTAAACAAAAACAATTAGTTTTTGAGAAAAAAGTGTTATTTTACTTCAAAAATGCAATTTTCAGTCCGATCCCACATCCGGAAAAAAGTAAGCAAACATTTTTTATTTTTATAATTTTGTTTAAGCATTGAAAATTTGATACTTACAATTCAGCTCAAAATTAGATGCTAATTCAACGTTTTTCCAAAAAAAAAGAATTATTTTTCCTAAATTTGGAAGCTGGCCAAAACTGTCCGGGCCTTCCGGGCCGGGCCGGGCCTTGACCAACTTTTTGAAAGCCCGGCACGGCCCGTTGCAAGTATSGATATATCTATACAAACGAACCCCACAAATTGTCAGTTTCATCAAGTCGATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33184</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>228188</contig_pos>
        <strand>+</strand>
        <context>AAAGTGAAAA[A/G]TTGTTACTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAAACATATTTCTATTTTTGTGAAAATATTCAGAAAAAAAAAGTGAAAA</left_flank>
        <right_flank>TTGTTACTTCAACGATAACAACCAATGCCGAGAATTTTCTGGAAACGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTTGAGAAAAAAGTGTTATTTTACTTCAAAAATGCAATTTTCAGTCCGATCCCACATCCGGAAAAAAGTAAGCAAACATTTTTTATTTTTATAATTTTGTTTAAGCATTGAAAATTTGATACTTACAATTCAGCTCAAAATTAGATGCTAATTCAACGTTTTTCCAAAAAAAAAGAATTATTTTTCCTAAATTTGGAAGCTGGCCAAAACTGTCCGGGCCTTCCGGGCCGGGCCGGGCCTTGACCAACTTTTTGAAAGCCCGGCACGGCCCGTTGCAAGTATGGATATATCTATACAAACGAACCCCACAAATTGTCAGTTTCATCAAGTCGATCTTCCGAAATTTTCGAAAAACTTCGGAATTCAACAGAATTCATATTTTTGAAAGTCCCATTACAAAGTATCCCTTTTGGAATAGAAACAGTATCTAGACTGGCCGGAAAAACTAAAACATATTTCTATTTTTGTGAAAATATTCAGAAAAAAAAAGTGAAAAATTGTTACTTCAACGATAACAACCAATGCCGAGAATTTTCTGGAAACGATTGGGCTTCAGAAAAATTCCGGCAGCTCAAAAACACAATGGCGTTTTTTCAAATTTTCCAGAACTTTACCAGGAGGAAACAAAGTAGAATTTCAACAAAGATTGAGACGTTAACAATGATATAAACCAAATATCAGAGCCTCACTCAGATTAGAAAATTTCAAAGCCTGGAGTCCTGGAGATCATGATCTACCGATATGAGAAGTGGCTTTATAAACTTTCAACAGTTAAAAATGACAATTTTCATACTTTTGAAGATAGCTCCAATAGTTTTCCACATTGCAGGACAGAAATCGCTTACTAAATGTATTTTATTTGTTGTCTAAAATCCGATTTTTCAATTTTTAGAATGATATCTCTAGCGATTCACAAGTTGTGACCTGAAACACAAGTGACCGTATGAACTTGAAACGCACAGTTTGACAAGTTTTACGTTTTGTGAACGTGCTTCCA</canonical>
            <polymorphic>GTTTTTGAGAAAAAAGTGTTATTTTACTTCAAAAATGCAATTTTCAGTCCGATCCCACATCCGGAAAAAAGTAAGCAAACATTTTTTATTTTTATAATTTTGTTTAAGCATTGAAAATTTGATACTTACAATTCAGCTCAAAATTAGATGCTAATTCAACGTTTTTCCAAAAAAAAAGAATTATTTTTCCTAAATTTGGAAGCTGGCCAAAACTGTCCGGGCCTTCCGGGCCGGGCCGGGCCTTGACCAACTTTTTGAAAGCCCGGCACGGCCCGTTGCAAGTATGGATATATCTATACAAACGAACCCCACAAATTGTCAGTTTCATCAAGTCGATCTTCCGAAATTTTCGAAAAACTTCGGAATTCAACAGAATTCATATTTTTGAAAGTCCCATTACAAAGTATCCCTTTTGGAATAGAAACAGTATCTAGACTGGCCGGAAAAACTAAAACATATTTCTATTTTTGTGAAAATATTCAGAAAAAAAAAGTGAAAARTTGTTACTTCAACGATAACAACCAATGCCGAGAATTTTCTGGAAACGATTGGGCTTCAGAAAAATTCCGGCAGCTCAAAAACACAATGGCGTTTTTTCAAATTTTCCAGAACTTTACCAGGAGGAAACAAAGTAGAATTTCAACAAAGATTGAGACGTTAACAATGATATAAACCAAATATCAGAGCCTCACTCAGATTAGAAAATTTCAAAGCCTGGAGTCCTGGAGATCATGATCTACCGATATGAGAAGTGGCTTTATAAACTTTCAACAGTTAAAAATGACAATTTTCATACTTTTGAAGATAGCTCCAATAGTTTTCCACATTGCAGGACAGAAATCGCTTACTAAATGTATTTTATTTGTTGTCTAAAATCCGATTTTTCAATTTTTAGAATGATATCTCTAGCGATTCACAAGTTGTGACCTGAAACACAAGTGACCGTATGAACTTGAAACGCACAGTTTGACAAGTTTTACGTTTTGTGAACGTGCTTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>125 121 114 101 82 68 57 38 37 36 34 31 30 26 20 19 14 14 12 11 10</canonical_bands>
                <polymorphic_bands>159 121 114 101 82 68 57 38 37 36 31 30 26 20 19 14 14 12 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAAGTCCCATTACAAAGTATC</pcr_primer_p1>
		<pcr_primer_p2>TACTTTGTTTCCTCCTGGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAAAGTCCCATTACAAAGTATCCCTTTTGGAATAGAAACAGTATCTAGACTGGCCGGAAAAACTAAAACATATTTCTATTTTTGTGAAAATATTCAGAAAAAAAAAGTGAAAAATTGTTACTTCAACGATAACAACCAATGCCGAGAATTTTCTGGAAACGATTGGGCTTCAGAAAAATTCCGGCAGCTCAAAAACACAATGGCGTTTTTTCAAATTTTCCAGAACTTTACCAGGAGGAAACAAAGTA</canonical_amplicon>
		<polymorphic_amplicon>TGAAAGTCCCATTACAAAGTATCCCTTTTGGAATAGAAACAGTATCTAGACTGGCCGGAAAAACTAAAACATATTTCTATTTTTGTGAAAATATTCAGAAAAAAAAAGTGAAAARTTGTTACTTCAACGATAACAACCAATGCCGAGAATTTTCTGGAAACGATTGGGCTTCAGAAAAATTCCGGCAGCTCAAAAACACAATGGCGTTTTTTCAAATTTTCCAGAACTTTACCAGGAGGAAACAAAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33185</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>245785</contig_pos>
        <strand>+</strand>
        <context>CGGCTAGTGG[G/T]GGAATGGGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGTGG</left_flank>
        <right_flank>GGAATGGGAATTTCCTATTGTCTACAAGGTAACGTTTTTTTTCAGTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTGAAATCTTATGGTGAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGTGGGGGAATGGGAATTTCCTATTGTCTACAAGGTAACGTTTTTTTTCAGTTTTTAAAGAGAAGGATACATTAAAAAATCACTTCCACAGTCTCTTCAAAATTCACACGGTAACTCAAAAAACCCATAAATATCACCCCTTTCCTTTTCTCTAAGTTAACCTATTTTTCAGTTTCCTTGGCTACAATGAAAATGGATGTTTCGGCTATGTAGTTCCAATGTGTAAAGACGGATACGGTGCTTTCTATCGCATCAATGCTTCTAGGTCTGAAAAACCATTTTAAGATTCACTTCTCCTTTTTTAATTTGTAGATTCACATTCACCTTATCCAATTACTTTGACGACGCAACGAATGGCGACGAATTCCGCGAGAACCTCGAGTATTCTCTCGATTTCATCAAGAACGTGATTGTGACCAACGAATAAAACCAATGCTGGTTTTTATCTTCTTGATTTCTTCTGTTTTGTGATATAAAATGTTTTCTCTCGGTTTCTTTTTTTTCCT</canonical>
            <polymorphic>TCCTGTGACAGGAATCAAAAAGTGGTCAACTGAAAAAATGTTGCTTATGTTATGATTAACAATTTGTTAGTGAATTACGTTTTCATACCTGTCACAGAAAGTGAGATATATCTTGGAGCAAAATTGACGGTTTGAGTTTTCTATTAGAGTGTAAACGTTATATGGAAAAATAAGAAAAATAGCTTTTGAGCGTCCCTGAAAAAATTTGAGATCCCAAAATTTTTGAAATTTAAGATTTTCCAATACTTGAAACGTCAGAGCCCGGGTTTTTCACAAACAAAAAAATTTTGGAAGTTTATACATTTTCTATTGACTTCGAATTTCTTGACATTGAAAATTTTGGAGAGTTCTAAATTTTAAATTTGGAAAACAAATATTCTATACCATCCACACCTCGAATTGTTTTTCAGTTTTTCAGAATGTCCCAATTGGCTCTGAAATCTTATGGTGAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGTGGKGGAATGGGAATTTCCTATTGTCTACAAGGTAACGTTTTTTTTCAGTTTTTAAAGAGAAGGATACATTAAAAAATCACTTCCACAGTCTCTTCAAAATTCACACGGTAACTCAAAAAACCCATAAATATCACCCCTTTCCTTTTCTCTAAGTTAACCTATTTTTCAGTTTCCTTGGCTACAATGAAAATGGATGTTTCGGCTATGTAGTTCCAATGTGTAAAGACGGATACGGTGCTTTCTATCGCATCAATGCTTCTAGGTCTGAAAAACCATTTTAAGATTCACTTCTCCTTTTTTAATTTGTAGATTCACATTCACCTTATCCAATTACTTTGACGACGCAACGAATGGCGACGAATTCCGCGAGAACCTCGAGTATTCTCTCGATTTCATCAAGAACGTGATTGTGACCAACGAATAAAACCAATGCTGGTTTTTATCTTCTTGATTTCTTCTGTTTTGTGATATAAAATGTTTTCTCTCGGTTTCTTTTTTTTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTGAAATCTTATGGTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAAGGAAACTGAAAAATAGGTTA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CTCTGAAATCTTATGGTGAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGTGGGGGAATGGGAATTTCCTATTGTCTACAAGGTAACGTTTTTTTTCAGTTTTTAAAGAGAAGGATACATTAAAAAATCACTTCCACAGTCTCTTCAAAATTCACACGGTAACTCAAAAAACCCATAAATATCACCCCTTTCCTTTTCTCTAAGTTAACCTATTTTTCAGTTTCCTTG</canonical_amplicon>
		<polymorphic_amplicon>CTCTGAAATCTTATGGTGAAAAAATCGCCATCCCATTTTTAGACGACCATTCCTATGCGGCTAGTGGKGGAATGGGAATTTCCTATTGTCTACAAGGTAACGTTTTTTTTCAGTTTTTAAAGAGAAGGATACATTAAAAAATCACTTCCACAGTCTCTTCAAAATTCACACGGTAACTCAAAAAACCCATAAATATCACCCCTTTCCTTTTCTCTAAGTTAACCTATTTTTCAGTTTCCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33186</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>247209</contig_pos>
        <strand>+</strand>
        <context>CAAACTCTCA[A/C]TGRTTATGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCA</left_flank>
        <right_flank>TGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAAAGAAATTGAAGTTCATATTTTGTAGGCGTTAAAACCTTCTAGAAACGTTTTATTTATATAGCGACCCCCAATTAGTTTCTGTCACGGTCAAATCACACCGAATCCCCGCCTTTTTCATTCTGAAACCAACCGATAACCTCAAGATTGGTTTTGGATTCGTGATATAGACAGTGTAAAGAGGAATGACGTCAGCTTTTCGGTGAAAATGTTTGTCTTTTTCTTCTGTCCATTTCACGAACAGGTAGGGTTTGATATTGGGCGATTTTTTTTTCTGGGCAATTTTTTTTTGGGGGATGAAGGCAGAAAACAAAAAATATGTATCGACCTGATTTGAATAATGGTGGGTGATTTTTAGAGATATGCATAATCATTGATGATCACATTTGAAGAGAAAACTCGATTTTAATAAACGTATTGCTGAGAAGATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCACGTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGA</canonical>
            <polymorphic>AATAAAGAAATTGAAGTTCATATTTTGTAGGCGTTAAAACCTTCTAGAAACGTTTTATTTATATAGCGACCCCCAATTAGTTTCTGTCACGGTCAAATCACACCGAATCCCCGCCTTTTTCATTCTGAAACCAACCGATAACCTCAAGATTGGTTTTGGATTCGTGATATAGACAGTGTAAAGAGGAATGACGTCAGCTTTTCGGTGAAAATGTTTGTCTTTTTCTTCTGTCCATTTCACGAACAGGTAGGGTTTGATATTGGGCGATTTTTTTTTCTGGGCAATTTTTTTTTGGGGGATGAAGGCAGAAAACAAAAAATATGTATCGACCTGATTTGAATAATGGTGGGTGATTTTTAGAGATATGCATAATCATTGATGATCACATTTGAAGAGAAAACTCGATTTTAATAAACGTATTGCTGAGAAGATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAMTGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCACGTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATCGACCTGATTTGAATAAT</pcr_primer_p1>
		<pcr_primer_p2>CTCTATATTGCTGTTTTGACTAGC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTATCGACCTGATTTGAATAATGGTGGGTGATTTTTAGAGATATGCATAATCATTGATGATCACATTTGAAGAGAAAACTCGATTTTAATAAACGTATTGCTGAGAAGATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAG</canonical_amplicon>
		<polymorphic_amplicon>TGTATCGACCTGATTTGAATAATGGTGGGTGATTTTTAGAGATATGCATAATCATTGATGATCACATTTGAAGAGAAAACTCGATTTTAATAAACGTATTGCTGAGAAGATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAMTGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33187</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>247212</contig_pos>
        <strand>+</strand>
        <context>ACTCTCAMTG[A/G]TTATGAAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATG</left_flank>
        <right_flank>TTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGAAATTGAAGTTCATATTTTGTAGGCGTTAAAACCTTCTAGAAACGTTTTATTTATATAGCGACCCCCAATTAGTTTCTGTCACGGTCAAATCACACCGAATCCCCGCCTTTTTCATTCTGAAACCAACCGATAACCTCAAGATTGGTTTTGGATTCGTGATATAGACAGTGTAAAGAGGAATGACGTCAGCTTTTCGGTGAAAATGTTTGTCTTTTTCTTCTGTCCATTTCACGAACAGGTAGGGTTTGATATTGGGCGATTTTTTTTTCTGGGCAATTTTTTTTTGGGGGATGAAGGCAGAAAACAAAAAATATGTATCGACCTGATTTGAATAATGGTGGGTGATTTTTAGAGATATGCATAATCATTGATGATCACATTTGAAGAGAAAACTCGATTTTAATAAACGTATTGCTGAGAAGATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCACGTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAA</canonical>
            <polymorphic>AAAGAAATTGAAGTTCATATTTTGTAGGCGTTAAAACCTTCTAGAAACGTTTTATTTATATAGCGACCCCCAATTAGTTTCTGTCACGGTCAAATCACACCGAATCCCCGCCTTTTTCATTCTGAAACCAACCGATAACCTCAAGATTGGTTTTGGATTCGTGATATAGACAGTGTAAAGAGGAATGACGTCAGCTTTTCGGTGAAAATGTTTGTCTTTTTCTTCTGTCCATTTCACGAACAGGTAGGGTTTGATATTGGGCGATTTTTTTTTCTGGGCAATTTTTTTTTGGGGGATGAAGGCAGAAAACAAAAAATATGTATCGACCTGATTTGAATAATGGTGGGTGATTTTTAGAGATATGCATAATCATTGATGATCACATTTGAAGAGAAAACTCGATTTTAATAAACGTATTGCTGAGAAGATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGRTTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCACGTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATCGACCTGATTTGAATAAT</pcr_primer_p1>
		<pcr_primer_p2>CTCTATATTGCTGTTTTGACTAGC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTATCGACCTGATTTGAATAATGGTGGGTGATTTTTAGAGATATGCATAATCATTGATGATCACATTTGAAGAGAAAACTCGATTTTAATAAACGTATTGCTGAGAAGATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAG</canonical_amplicon>
		<polymorphic_amplicon>TGTATCGACCTGATTTGAATAATGGTGGGTGATTTTTAGAGATATGCATAATCATTGATGATCACATTTGAAGAGAAAACTCGATTTTAATAAACGTATTGCTGAGAAGATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGRTTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33188</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>247639</contig_pos>
        <strand>+</strand>
        <context>ATTCCCTAGA[A/C]AATTTTTGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTAGA</left_flank>
        <right_flank>AATTTTTGTTACAATTCACGTGAAGGTTTAAAATTTATTATCGAGGTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCACGTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAAAAAATTATTTTCCACCGCGGATGATGGTCTCCTTGATGATGGTTGGTCCTCCCCGTCCAAATCCTGGTCCTCCACCAAATCCGTTTCCTGGTCCACCTCCGAATCCTCCACGTCCACCATATCCTGGCCCTCCTCCGAATCCATTTCCTGGTCCTCCTCCAAATCCACCACGTCCTCCGTATCCTGGTCCTCCTCCGAATCCGTTTCCTGGTCCTCCACCGAATCCTCCACGTCCGAACTGTCCTGGACCTCCACCAAATCCACCGCGTGGTCCGGCGGTCTCAATGATTGTCGTCTTCTTGACGAATCCTTGTGGGGCAGCCATGGCGGCGGCAAGGAGGCCGAGGAGAAGAATAATAGCGTAAGAGTTCATTTTGAGTGAAACTGATTGGAAATATGGAAAATCAACGCGTTTATAAAGCATATC</canonical>
            <polymorphic>ATGATCACTATGACCGTACCTAACGAAAATCCTAAAATTGAGAATTCTGAGAAAAACACCAAACTCTCAATGATTATGAAAACTGTCGTATAGTCTGAAAAAATTCAAATTTTTGAGCTAGTCAAAACAGCAATATAGAGCGTAAAAATGTCTGAAAACGCGAAATTTCGCGAAACCTCAATGAATGTTTTCGTTACATTTCTAAAATTTCTATTTGAATCCATTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTAGAMAATTTTTGTTACAATTCACGTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAAAAAATTATTTTCCACCGCGGATGATGGTCTCCTTGATGATGGTTGGTCCTCCCCGTCCAAATCCTGGTCCTCCACCAAATCCGTTTCCTGGTCCACCTCCGAATCCTCCACGTCCACCATATCCTGGCCCTCCTCCGAATCCATTTCCTGGTCCTCCTCCAAATCCACCACGTCCTCCGTATCCTGGTCCTCCTCCGAATCCGTTTCCTGGTCCTCCACCGAATCCTCCACGTCCGAACTGTCCTGGACCTCCACCAAATCCACCGCGTGGTCCGGCGGTCTCAATGATTGTCGTCTTCTTGACGAATCCTTGTGGGGCAGCCATGGCGGCGGCAAGGAGGCCGAGGAGAAGAATAATAGCGTAAGAGTTCATTTTGAGTGAAACTGATTGGAAATATGGAAAATCAACGCGTTTATAAAGCATATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCTGACTTTATGAACAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TCATCAAGGAGACCATCATC</pcr_primer_p2>
		<pcr_amplicon_size>389</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTAGACAATTTTTGTTACAATTCACGTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAAAAAATTATTTTCCACCGCGGATGATGGTCTCCTTGATGA</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCTGACTTTATGAACAAAACGCCTTTTTTAGGGAAAAACAGATTTTTGGAGCTATTCTTGAGGTCGCAAAAATTGGCTTTTCTATACGATTCAACTCGCGAAGTAATACTTTCAGAGTAAAACAATACTAGGAAGTACAATGATTTCAAAATTCGAGATGTAGTAGTTTCTTTAAAAAATTGAACGGGTCGGAATTTTAAAATTTTTTAAAAATTCCTAAATTCTCTTATGTGTGTTTTACTGTAGTCATTTTTCCAATGAAATTCCCTAGAMAATTTTTGTTACAATTCACGTGAAGGTTTAAAATTTATTATCGAGGTTTTTTAAGACAGAATATTAGAGAAAAAAAATTATTTTCCACCGCGGATGATGGTCTCCTTGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33189</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>275362</contig_pos>
        <strand>+</strand>
        <context>AAMAAAATTG[C/T]ATTTTTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACGCGGAGCCGATCCCCAGAATTGGTGGGAAAATCTTTAAAAAAATTG</left_flank>
        <right_flank>ATTTTTTTTTGTTATTTTCCAGTGGTTTTGATTTTTTTTTGCTTCGTCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGGAGCCAACCGATGACGCAACCAATTATCGCCGCCAGTACAATGGCCCCGATACTTTTCACCATTGTCGCGAAGACAGCGTCTGGAAGAACAAAACACATGTTCTTTTTTTTCATTTTCAGAGAACCAATTTGTGCCTACCATGTGTATAAGTGACAGACGATGTTACGGAAAATATCAACAACGACGTAAAGTTATCAAAACAGCACGCAGCTGGAACCACATCAGGAATGTTCTGGATTGGAGGAAAATAAAATATGAATTTGTGTATGTATTTTGATTATTACTCACCTTCGTTGTTCCTATTCCTTGTTCTTTCAGCCGGAGCATCGTTGGCATGCCGACAGCTGGAGATACTGTAGCCACTACGAACCCACAAATAATGCCAAGTGAGATGGGAAAGTTGAAAAAGACGCAAGCAGTGAAACATATCGCAATTGCTTCGCAAAACGCGGAGCCGATCCCCAGAATTGGTGGGAAAATCTTTAAAAAAATTGTATTTTTTTTTGTTATTTTCCAGTGGTTTTGATTTTTTTTTGCTTCGTCATGATAGTTTTGGTTTCGAACAACTTAAGCCTTATAAAGCTGGAAAATAATGGGGGATAATGACTTTGAAAATCAAACAGCACAAAAAAGGCATAAACAGTTTTAGATTACTGTTTTCGTGGTTTTCGAATATGATTTCTCTACATATTTTGTGCAAAAAAAAACCAAAAGTTTAAAACGGCAAGTTTGAATACTGTAAAACTTGTAGTAGAAAAGATTTCAAACTTTTGACTTCCAATCGATTTATCTCGAATCCTGTTTAAAAGATGAAAATTTTGTCAACTGATGAATTATTTATCATATCATCATCGTTTTATCAGTTTACAGATTTTTGGAATCTCTCACAGGAACCGAGATAATTTAGCTCAAACCTGACACTTACTTTTTTCGTAGTAAGTGTATTTCCAAAATTTGACCCTAACGTACGTTTTTCATGTGAAAAAGAAGTATCA</canonical>
            <polymorphic>GAAGGAGCCAACCGATGACGCAACCAATTATCGCCGCCAGTACAATGGCCCCGATACTTTTCACCATTGTCGCGAAGACAGCGTCTGGAAGAACAAAACACATGTTCTTTTTTTTCATTTTCAGAGAACCAATTTGTGCCTACCATGTGTATAAGTGACAGACGATGTTACGGAAAATATCAACAACGACGTAAAGTTATCAAAACAGCACGCAGCTGGAACCACATCAGGAATGTTCTGGATTGGAGGAAAATAAAATATGAATTTGTGTATGTATTTTGATTATTACTCACCTTCGTTGTTCCTATTCCTTGTTCTTTCAGCCGGAGCATCGTTGGCATGCCGACAGCTGGAGATACTGTAGCCACTACGAACCCACAAATAATGCCAAGTGAGATGGGAAAGTTGAAAAAGACGCAAGCAGTGAAACATATCGCAATTGCTTCGCAAAACGCGGAGCCGATCCCCAGAATTGGTGGGAAAATCTTTAAAAAAATTGYATTTTTTTTTGTTATTTTCCAGTGGTTTTGATTTTTTTTTGCTTCGTCATGATAGTTTTGGTTTCGAACAACTTAAGCCTTATAAAGCTGGAAAATAATGGGGGATAATGACTTTGAAAATCAAACAGCACAAAAAAGGCATAAACAGTTTTAGATTACTGTTTTCGTGGTTTTCGAATATGATTTCTCTACATATTTTGTGCAAAAAAAAACCAAAAGTTTAAAACGGCAAGTTTGAATACTGTAAAACTTGTAGTAGAAAAGATTTCAAACTTTTGACTTCCAATCGATTTATCTCGAATCCTGTTTAAAAGATGAAAATTTTGTCAACTGATGAATTATTTATCATATCATCATCGTTTTATCAGTTTACAGATTTTTGGAATCTCTCACAGGAACCGAGATAATTTAGCTCAAACCTGACACTTACTTTTTTCGTAGTAAGTGTATTTCCAAAATTTGACCCTAACGTACGTTTTTCATGTGAAAAAGAAGTATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATACTGTAGCCACTACGAACC</pcr_primer_p1>
		<pcr_primer_p2>CCCATTATTTTCCAGCTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATACTGTAGCCACTACGAACCCACAAATAATGCCAAGTGAGATGGGAAAGTTGAAAAAGACGCAAGCAGTGAAACATATCGCAATTGCTTCGCAAAACGCGGAGCCGATCCCCAGAATTGGTGGGAAAATCTTTAAAAAAATTGTATTTTTTTTTGTTATTTTCCAGTGGTTTTGATTTTTTTTTGCTTCGTCATGATAGTTTTGGTTTCGAACAACTTAAGCCTTATAAAGCTGGAAAATAATGGG</canonical_amplicon>
		<polymorphic_amplicon>GATACTGTAGCCACTACGAACCCACAAATAATGCCAAGTGAGATGGGAAAGTTGAAAAAGACGCAAGCAGTGAAACATATCGCAATTGCTTCGCAAAACGCGGAGCCGATCCCCAGAATTGGTGGGAAAATCTTTAAAAAAATTGYATTTTTTTTTGTTATTTTCCAGTGGTTTTGATTTTTTTTTGCTTCGTCATGATAGTTTTGGTTTCGAACAACTTAAGCCTTATAAAGCTGGAAAATAATGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33190</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>278059</contig_pos>
        <strand></strand>
        <context>tgagctattc[T/G]ttttttCCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TGTTTTTTTTTCATTTGCCTCTTTTTTTTTGGTTTTATTTTGAGCTATTC</left_flank>
        <right_flank>TTTTTTCCGAATCTGAAAATATCCCAAATCCGAGACCTATTTCTGGTGGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACAGATGAAAGAAGTTCATCTGGTCAGTTCATTTTTTTCAGGTGGTTCATGATATCACTTTGTTGAAAAATTGGAATTGTGTAAAGAAGAGAAATGAATTTTCAGAGTTTCTCGGAAAATCCCTTTGGTAATTTTTTTAGGTTTGGTGTCTTGAACATTTCCTGGTCTCTTCGTCGTCATAGAAAGCTGATTTCTCTTTATTATATGTTCATTTCCTCGTGGGTTTCCGATGGTCATGATGATGTAACGGCGTCAAAATCGTATCAATTCTTGTCTGCCTTATGAAAATCTCCTTGACGAGCGGGATGAAAAAAGATGGACAAGGTTTGCAGGAGATCAGGCGCAACAACGAGATAATGAAAAAGTTTTAACCGCATTCACAACCCATTAGTCACAGATTCATATATTGTCTCCGCGACCCGCTTTTTCCTATTTTTTTTTGACTTGTGTTTTTTTTTCATTTGCCTCTTTTTTTTTGGTTTTATTTTGAGCTATTCTTTTTTTCCGAATCTGAAAATATCCCAAATCCGAGACCTATTTCTGGTGGAAGATCTATAAGAAAATTTTGTGAATGTTCTATGACCTACCTTTCAATAAATTATGGTGGTCAAGAAACAAAATGATTCACAACTATGCTATCTCTAGCGGTTTTCTCAATTACCATTCCCCATAAACAACAAAAAAACCGTTTCCTTGTTTATAACCGTAACTTTCTCCATTCATTCAGTTCTTTTTTCTATTTTTTCTGACATATAGTATAGTTGTGATTGATGTCTTAGTCTCTGAACTCTATACGTTTCTCAAATCACTAATAAAAGAGACATTTGGGGTTTTTTCTCACGCCCAGAAAACTTGATTCGAAATTGACTTGAAACTTTTTTCGTAACGTTTTTAAAAGTTTCTCACACTCGGGAGACACACCTTGATATGTACCCGTAATGTATTATCTTTTGACTTTTCCCAAATTTTTTACGCAAGAAGAAGGTCACTTGAGACTT</canonical>
            <polymorphic>TGACAGATGAAAGAAGTTCATCTGGTCAGTTCATTTTTTTCAGGTGGTTCATGATATCACTTTGTTGAAAAATTGGAATTGTGTAAAGAAGAGAAATGAATTTTCAGAGTTTCTCGGAAAATCCCTTTGGTAATTTTTTTAGGTTTGGTGTCTTGAACATTTCCTGGTCTCTTCGTCGTCATAGAAAGCTGATTTCTCTTTATTATATGTTCATTTCCTCGTGGGTTTCCGATGGTCATGATGATGTAACGGCGTCAAAATCGTATCAATTCTTGTCTGCCTTATGAAAATCTCCTTGACGAGCGGGATGAAAAAAGATGGACAAGGTTTGCAGGAGATCAGGCGCAACAACGAGATAATGAAAAAGTTTTAACCGCATTCACAACCCATTAGTCACAGATTCATATATTGTCTCCGCGACCCGCTTTTTCCTATTTTTTTTTGACTTGTGTTTTTTTTTCATTTGCCTCTTTTTTTTTGGTTTTATTTTGAGCTATTCKTTTTTTCCGAATCTGAAAATATCCCAAATCCGAGACCTATTTCTGGTGGAAGATCTATAAGAAAATTTTGTGAATGTTCTATGACCTACCTTTCAATAAATTATGGTGGTCAAGAAACAAAATGATTCACAACTATGCTATCTCTAGCGGTTTTCTCAATTACCATTCCCCATAAACAACAAAAAAACCGTTTCCTTGTTTATAACCGTAACTTTCTCCATTCATTCAGTTCTTTTTTCTATTTTTTCTGACATATAGTATAGTTGTGATTGATGTCTTAGTCTCTGAACTCTATACGTTTCTCAAATCACTAATAAAAGAGACATTTGGGGTTTTTTCTCACGCCCAGAAAACTTGATTCGAAATTGACTTGAAACTTTTTTCGTAACGTTTTTAAAAGTTTCTCACACTCGGGAGACACACCTTGATATGTACCCGTAATGTATTATCTTTTGACTTTTCCCAAATTTTTTACGCAAGAAGAAGGTCACTTGAGACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACAACGAGATAATGAAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TGAAAGGTAGGTCATAGAACATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAACAACGAGATAATGAAAAAGTTTTAACCGCATTCACAACCCATTAGTCACAGATTCATATATTGTCTCCGCGACCCGCTTTTTCCTATTTTTTTTTGACTTGTGTTTTTTTTTCATTTGCCTCTTTTTTTTTGGTTTTATTTTGAGCTATTCTTTTTTTCCGAATCTGAAAATATCCCAAATCCGAGACCTATTTCTGGTGGAAGATCTATAAGAAAATTTTGTGAATGTTCTATGACCTACCTTTCA</canonical_amplicon>
		<polymorphic_amplicon>CAACAACGAGATAATGAAAAAGTTTTAACCGCATTCACAACCCATTAGTCACAGATTCATATATTGTCTCCGCGACCCGCTTTTTCCTATTTTTTTTTGACTTGTGTTTTTTTTTCATTTGCCTCTTTTTTTTTGGTTTTATTTTGAGCTATTCKTTTTTTCCGAATCTGAAAATATCCCAAATCCGAGACCTATTTCTGGTGGAAGATCTATAAGAAAATTTTGTGAATGTTCTATGACCTACCTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33191</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>309206</contig_pos>
        <strand></strand>
        <context>tttctgttaa[A/G]gatatcaaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGCTCAAATCAACTGTCAATTTTTAGCTTCATTAGCTCTATTTCTGTTAA</left_flank>
        <right_flank>GATATCAAAAAGGTGCTAGGTGATAAAAGACATTTGGGTGAATAACCGAG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTCGATAGCAGCACAGTAGGGTCTTTTTGGTGGTCTTATTCAAAATCGAGCATGTTTACTCGTAGAAGAGAATGCTATATTTTCGTTATTTCAGAAAAAAAAGTCAAACTTGAAATCTTAAAAAAATAATCGAAAACGCTTCAATTTGTTTGAAAGTTACGCAATACGCCAACCATCATAAGAGCTTTGTTATTGACCACTGTTTTGTACAAATTCAACCAAGCGATATGAAGCGGAACAGAGGCATTTTCGACAATTTTTTGGTTAAGATGATATATCTCATCAGAATAGAGCTTGCTTGGCTCTAAAATTTTTATGCACTACAATGAAATTCTATTATTTAATAAACTCTGATCCTTTTAGAGCAATGCGAAAAGTCTTAACTTTATTCTGGGATTTGTATAATTGATTAATTTCTTCTGAAAATATCGTCTTTCATATAAACGAGGCTCAAATCAACTGTCAATTTTTAGCTTCATTAGCTCTATTTCTGTTAAAGATATCAAAAAGGTGCTAGGTGATAAAAGACATTTGGGTGAATAACCGAGCAGTTGCCAATTTTTTAATATCGTCAACGGGAATCGAGATAATTGAGCTCAAAAATATTATATTTGTCATCTGGTTCTCTGCTAAAATATTAACTTTCAAACTTTTCCATAATACAATTTAGGGTCACAAATTTAAGAGTAACACTATTTTAGTTCAATCTGGTACCACAGTGTCCTTGAACACCCTCTTTTCCTTCTTGCGACAAACAGTAATCAATCACTTTCCTAGAATCAAATTAAGACACCAGCCTTCCAACGTTTACCCGTCGGTGATACGATACTGACAAGTTGTTTTTCTTAGCGAAACACCTAATTTTTTCTTTCTTTGTTTGAAACTTGGAAACTATATATTTATTAAAATTTTTGGTCAACCTAGAAAATAAGCAGGTCAACCTGAGATTAGAAATTTAGAAATTGAGGGGGAAATTGTGTGAATTGGACCGTAAATTC</canonical>
            <polymorphic>GTTTCGATAGCAGCACAGTAGGGTCTTTTTGGTGGTCTTATTCAAAATCGAGCATGTTTACTCGTAGAAGAGAATGCTATATTTTCGTTATTTCAGAAAAAAAAGTCAAACTTGAAATCTTAAAAAAATAATCGAAAACGCTTCAATTTGTTTGAAAGTTACGCAATACGCCAACCATCATAAGAGCTTTGTTATTGACCACTGTTTTGTACAAATTCAACCAAGCGATATGAAGCGGAACAGAGGCATTTTCGACAATTTTTTGGTTAAGATGATATATCTCATCAGAATAGAGCTTGCTTGGCTCTAAAATTTTTATGCACTACAATGAAATTCTATTATTTAATAAACTCTGATCCTTTTAGAGCAATGCGAAAAGTCTTAACTTTATTCTGGGATTTGTATAATTGATTAATTTCTTCTGAAAATATCGTCTTTCATATAAACGAGGCTCAAATCAACTGTCAATTTTTAGCTTCATTAGCTCTATTTCTGTTAARGATATCAAAAAGGTGCTAGGTGATAAAAGACATTTGGGTGAATAACCGAGCAGTTGCCAATTTTTTAATATCGTCAACGGGAATCGAGATAATTGAGCTCAAAAATATTATATTTGTCATCTGGTTCTCTGCTAAAATATTAACTTTCAAACTTTTCCATAATACAATTTAGGGTCACAAATTTAAGAGTAACACTATTTTAGTTCAATCTGGTACCACAGTGTCCTTGAACACCCTCTTTTCCTTCTTGCGACAAACAGTAATCAATCACTTTCCTAGAATCAAATTAAGACACCAGCCTTCCAACGTTTACCCGTCGGTGATACGATACTGACAAGTTGTTTTTCTTAGCGAAACACCTAATTTTTTCTTTCTTTGTTTGAAACTTGGAAACTATATATTTATTAAAATTTTTGGTCAACCTAGAAAATAAGCAGGTCAACCTGAGATTAGAAATTTAGAAATTGAGGGGGAAATTGTGTGAATTGGACCGTAAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATATAAACGAGGCTCAAATC</pcr_primer_p1>
		<pcr_primer_p2>AAATTTGTGACCCTAAATTGTATT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCATATAAACGAGGCTCAAATCAACTGTCAATTTTTAGCTTCATTAGCTCTATTTCTGTTAAAGATATCAAAAAGGTGCTAGGTGATAAAAGACATTTGGGTGAATAACCGAGCAGTTGCCAATTTTTTAATATCGTCAACGGGAATCGAGATAATTGAGCTCAAAAATATTATATTTGTCATCTGGTTCTCTGCTAAAATATTAACTTTCAAACTTTTCCATAATACAATTTAGGGTCACAAATTT</canonical_amplicon>
		<polymorphic_amplicon>TCATATAAACGAGGCTCAAATCAACTGTCAATTTTTAGCTTCATTAGCTCTATTTCTGTTAARGATATCAAAAAGGTGCTAGGTGATAAAAGACATTTGGGTGAATAACCGAGCAGTTGCCAATTTTTTAATATCGTCAACGGGAATCGAGATAATTGAGCTCAAAAATATTATATTTGTCATCTGGTTCTCTGCTAAAATATTAACTTTCAAACTTTTCCATAATACAATTTAGGGTCACAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33192</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>311779</contig_pos>
        <strand></strand>
        <context>ttgagcctat[T/A]tatcttattc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTAT</left_flank>
        <right_flank>TATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTGCTTGCGTTTCGTGTGTATTTTTTGCCCTTTTTGCATGAGAACTAACCAAATTTCAGATGTCCCAAACTGCCCAACTCAAATCGACCATCGCTGGTCAACAGGAACACATTCGTTGTATGGAAACTACAATTGATGACTTGAAACAACAAATTGCGTCGCAAACCGAGAGAAATGATGTGCTCGAGTTCCAAGTGCTTGAGATGGAGGAGAATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATACAAAATTCGAGTCTGAAAAATCCCAATTGCTCAAAGAACTAATCGAAGTCAAAAAGGCTCATGCTGCTCAACTTGAAAATATTGCCTCTATCAGAAAGGAACTTGAAGAGCACAAGTCTGCTGCTCCAGCCGCCAATGCTTCAGTATCCGAGTCAGAGAAAGTGAAGACCAT</canonical>
            <polymorphic>GATTTGCTTGCGTTTCGTGTGTATTTTTTGCCCTTTTTGCATGAGAACTAACCAAATTTCAGATGTCCCAAACTGCCCAACTCAAATCGACCATCGCTGGTCAACAGGAACACATTCGTTGTATGGAAACTACAATTGATGACTTGAAACAACAAATTGCGTCGCAAACCGAGAGAAATGATGTGCTCGAGTTCCAAGTGCTTGAGATGGAGGAGAATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATWTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATACAAAATTCGAGTCTGAAAAATCCCAATTGCTCAAAGAACTAATCGAAGTCAAAAAGGCTCATGCTGCTCAACTTGAAAATATTGCCTCTATCAGAAAGGAACTTGAAGAGCACAAGTCTGCTGCTCCAGCCGCCAATGCTTCAGTATCCGAGTCAGAGAAAGTGAAGACCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACCAGTTACTATTTACCAGCACT</pcr_primer_p1>
		<pcr_primer_p2>TTACAGTCAATCAAAGGATGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAA</canonical_amplicon>
		<polymorphic_amplicon>TACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATWTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33193</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>311836</contig_pos>
        <strand></strand>
        <context>attttaatga[T/A]agcattaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGA</left_flank>
        <right_flank>AGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAGATGTCCCAAACTGCCCAACTCAAATCGACCATCGCTGGTCAACAGGAACACATTCGTTGTATGGAAACTACAATTGATGACTTGAAACAACAAATTGCGTCGCAAACCGAGAGAAATGATGTGCTCGAGTTCCAAGTGCTTGAGATGGAGGAGAATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATACAAAATTCGAGTCTGAAAAATCCCAATTGCTCAAAGAACTAATCGAAGTCAAAAAGGCTCATGCTGCTCAACTTGAAAATATTGCCTCTATCAGAAAGGAACTTGAAGAGCACAAGTCTGCTGCTCCAGCCGCCAATGCTTCAGTATCCGAGTCAGAGAAAGTGAAGACCATTCAAGAGAAACTAGAAAAAGCTGAATCTGCCAATGTTACAGTAAGAAATTGTTCAAT</canonical>
            <polymorphic>TTCAGATGTCCCAAACTGCCCAACTCAAATCGACCATCGCTGGTCAACAGGAACACATTCGTTGTATGGAAACTACAATTGATGACTTGAAACAACAAATTGCGTCGCAAACCGAGAGAAATGATGTGCTCGAGTTCCAAGTGCTTGAGATGGAGGAGAATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGAWAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATACAAAATTCGAGTCTGAAAAATCCCAATTGCTCAAAGAACTAATCGAAGTCAAAAAGGCTCATGCTGCTCAACTTGAAAATATTGCCTCTATCAGAAAGGAACTTGAAGAGCACAAGTCTGCTGCTCCAGCCGCCAATGCTTCAGTATCCGAGTCAGAGAAAGTGAAGACCATTCAAGAGAAACTAGAAAAAGCTGAATCTGCCAATGTTACAGTAAGAAATTGTTCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACCAGTTACTATTTACCAGCACT</pcr_primer_p1>
		<pcr_primer_p2>TTACAGTCAATCAAAGGATGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAA</canonical_amplicon>
		<polymorphic_amplicon>TACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGAWAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33194</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>311891</contig_pos>
        <strand></strand>
        <context>acgagtgcca[G/A]gataatctgg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCA</left_flank>
        <right_flank>GATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTCGTTGTATGGAAACTACAATTGATGACTTGAAACAACAAATTGCGTCGCAAACCGAGAGAAATGATGTGCTCGAGTTCCAAGTGCTTGAGATGGAGGAGAATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATACAAAATTCGAGTCTGAAAAATCCCAATTGCTCAAAGAACTAATCGAAGTCAAAAAGGCTCATGCTGCTCAACTTGAAAATATTGCCTCTATCAGAAAGGAACTTGAAGAGCACAAGTCTGCTGCTCCAGCCGCCAATGCTTCAGTATCCGAGTCAGAGAAAGTGAAGACCATTCAAGAGAAACTAGAAAAAGCTGAATCTGCCAATGTTACAGTAAGAAATTGTTCAATTACGCAGAGAGTTAATCCAATTTTCAGATTAATGAGGAACTAAGGTCGGCGTCGA</canonical>
            <polymorphic>CATTCGTTGTATGGAAACTACAATTGATGACTTGAAACAACAAATTGCGTCGCAAACCGAGAGAAATGATGTGCTCGAGTTCCAAGTGCTTGAGATGGAGGAGAATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCARGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATACAAAATTCGAGTCTGAAAAATCCCAATTGCTCAAAGAACTAATCGAAGTCAAAAAGGCTCATGCTGCTCAACTTGAAAATATTGCCTCTATCAGAAAGGAACTTGAAGAGCACAAGTCTGCTGCTCCAGCCGCCAATGCTTCAGTATCCGAGTCAGAGAAAGTGAAGACCATTCAAGAGAAACTAGAAAAAGCTGAATCTGCCAATGTTACAGTAAGAAATTGTTCAATTACGCAGAGAGTTAATCCAATTTTCAGATTAATGAGGAACTAAGGTCGGCGTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>498 308 194</canonical_bands>
                <polymorphic_bands>692 308</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>498 308 194</canonical_bands>
                <polymorphic_bands>692 308</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACCAGTTACTATTTACCAGCACT</pcr_primer_p1>
		<pcr_primer_p2>TTACAGTCAATCAAAGGATGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAA</canonical_amplicon>
		<polymorphic_amplicon>TACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCARGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33195</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>311913</contig_pos>
        <strand></strand>
        <context>tcaaagttca[C/T]ggtATAYGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCA</left_flank>
        <right_flank>GGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGAC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGATGACTTGAAACAACAAATTGCGTCGCAAACCGAGAGAAATGATGTGCTCGAGTTCCAAGTGCTTGAGATGGAGGAGAATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATACAAAATTCGAGTCTGAAAAATCCCAATTGCTCAAAGAACTAATCGAAGTCAAAAAGGCTCATGCTGCTCAACTTGAAAATATTGCCTCTATCAGAAAGGAACTTGAAGAGCACAAGTCTGCTGCTCCAGCCGCCAATGCTTCAGTATCCGAGTCAGAGAAAGTGAAGACCATTCAAGAGAAACTAGAAAAAGCTGAATCTGCCAATGTTACAGTAAGAAATTGTTCAATTACGCAGAGAGTTAATCCAATTTTCAGATTAATGAGGAACTAAGGTCGGCGTCGAAGGAACTTGGAAAGATTCGATT</canonical>
            <polymorphic>ATTGATGACTTGAAACAACAAATTGCGTCGCAAACCGAGAGAAATGATGTGCTCGAGTTCCAAGTGCTTGAGATGGAGGAGAATCAGAAACATCAGGTTTGATAGACATAACCATAATAGAGTTTTTTTGGTTAAAATGCTGTGATTTTGATTTTTCGTTAATTTGAATTATCTGATTTTGATCTGACTCGGTTCAGTTGGGATAATAGAGTTTGAATTAGTTTTCTTGTAAAATTAAAAATTAATTATTGGAAGCCGCAGTATACCGCTAAACCTGCGATAGAAAAATTTTAAATGTCCACATTTACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCAYGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAAAAAACTTCTTCTATAATATTACAGGTTAATTAGTTAATTTTAATTAATAATATTTAATTTTTAGTTAATTTTTGGTACAACTTCTATGTTTTTAATACCTAAAACTGTATATTCCAGGAAACGCTTGCCGAGAAAAATACAAAATTCGAGTCTGAAAAATCCCAATTGCTCAAAGAACTAATCGAAGTCAAAAAGGCTCATGCTGCTCAACTTGAAAATATTGCCTCTATCAGAAAGGAACTTGAAGAGCACAAGTCTGCTGCTCCAGCCGCCAATGCTTCAGTATCCGAGTCAGAGAAAGTGAAGACCATTCAAGAGAAACTAGAAAAAGCTGAATCTGCCAATGTTACAGTAAGAAATTGTTCAATTACGCAGAGAGTTAATCCAATTTTCAGATTAATGAGGAACTAAGGTCGGCGTCGAAGGAACTTGGAAAGATTCGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>348 245 153 110 94 50</canonical_bands>
                <polymorphic_bands>348 245 203 110 94</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>307 157 142 78 75 55 52 51 26 25 17 15</canonical_bands>
                <polymorphic_bands>332 157 142 78 75 55 52 51 26 17 15</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>503 263 98 52 48 36</canonical_bands>
                <polymorphic_bands>601 263 52 48 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACCAGTTACTATTTACCAGCACT</pcr_primer_p1>
		<pcr_primer_p2>TTACAGTCAATCAAAGGATGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCACGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAA</canonical_amplicon>
		<polymorphic_amplicon>TACCAGTTACTATTTACCAGCACTGATAGAATGTCTTAAAACCGTCAACTTTGAGCCTATTTATCTTATTCCCTGTGAGGGATATCAAAAAGTGAACAACTTACAAAATTTTAATGATAGCATTAAAAATTTTTTTCTGTTGATAATTCTTTGCTATCTCTTACGAGTGCCAGGATAATCTGGCTCAAAGTTCAYGGTATATGTTTTTGAAACTTGTACAGGAACTGAAACATCCTTTGATTGACTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33196</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>315250</contig_pos>
        <strand>+</strand>
        <context>ATTAGTATAA[C/T]TAGCGTTCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAACATGTATAATTGTCAGCTACTCAGTTATTCACTACTATTAGTATAA</left_flank>
        <right_flank>TAGCGTTCATCCGTGCCTACGTGCATCCTCCCAGATGTTCCTCTTCTATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGAAAATTCGCATTTTTAGAGCATTTAGAAAATTCCATTTGTAATTTTTTAAAATTAGAAAAGTAAAAAATTTTTTAAAACTTTGAAAATTCAAAAGTTTTTGAAAATTTGTGAATGTTCAGACAAATATTTCCGAAGGGAATAACGAAAAACGTTCATCCAGAAATTCTAGAATTTTAATTTTTGCATAAACCGCTGAACATTTTTTCGAGTTTCTGAAAACCCGAAAAATTATAAACTTTCACTTTTTTTTTTGAATCCCAAATAAAATCAAAATGTCAATTTTATGAATCTCTCTCTCTCTATACAACTTCCCAGGTTTAATGCTCCGTGTGTGGGGGAAAAAGTTTCGGAACTTTTCCAAACCTTTTCAACAAAAAATCCAACAAGCATTTCACAGAAGCCATCAATAATCAAAACGCTACAAAAAAGGCATCATCCTTTTCGGAACATGTATAATTGTCAGCTACTCAGTTATTCACTACTATTAGTATAATTAGCGTTCATCCGTGCCTACGTGCATCCTCCCAGATGTTCCTCTTCTATCTTTTCTTCTTTCTCTATCTCTCTCTCTCTCTCTCCCTCTCCCTCTTCTCCCAATACTCTTGACCCAGATTCTATTACACTAATTTTCGTATTGATTGACGTTTTCTGATACTTCTAGTATCTCTACACAGTTGCCAACTTTTATCAGTTCGCTAGTCTTCCTAGCTTTTCTCAACTGTTTCAAAATAAAACAACTAAAAACCGAAAGTGTCCAAAGAAGTCCATATTTTTCCTGGCATATGTGTCCTTCACGAAACAGTTGGCCGAATGTCTGCATCTCTCTCCTCTGCCTTATGTCTCAATCTCTAATCCTCAGAATTCCTATATCTCCCACTTCCTTCTGCTTCTTCTTCTTCTTCTGTCTTCATTCATATGCTTCTTATTCTTTTTCGTCTTCAGTTTCTAAATTAGTACTTGAACAGTGGTCGTCATTTTCATCTGGTTTTGAGAG</canonical>
            <polymorphic>AATTGAAAATTCGCATTTTTAGAGCATTTAGAAAATTCCATTTGTAATTTTTTAAAATTAGAAAAGTAAAAAATTTTTTAAAACTTTGAAAATTCAAAAGTTTTTGAAAATTTGTGAATGTTCAGACAAATATTTCCGAAGGGAATAACGAAAAACGTTCATCCAGAAATTCTAGAATTTTAATTTTTGCATAAACCGCTGAACATTTTTTCGAGTTTCTGAAAACCCGAAAAATTATAAACTTTCACTTTTTTTTTTGAATCCCAAATAAAATCAAAATGTCAATTTTATGAATCTCTCTCTCTCTATACAACTTCCCAGGTTTAATGCTCCGTGTGTGGGGGAAAAAGTTTCGGAACTTTTCCAAACCTTTTCAACAAAAAATCCAACAAGCATTTCACAGAAGCCATCAATAATCAAAACGCTACAAAAAAGGCATCATCCTTTTCGGAACATGTATAATTGTCAGCTACTCAGTTATTCACTACTATTAGTATAAYTAGCGTTCATCCGTGCCTACGTGCATCCTCCCAGATGTTCCTCTTCTATCTTTTCTTCTTTCTCTATCTCTCTCTCTCTCTCTCCCTCTCCCTCTTCTCCCAATACTCTTGACCCAGATTCTATTACACTAATTTTCGTATTGATTGACGTTTTCTGATACTTCTAGTATCTCTACACAGTTGCCAACTTTTATCAGTTCGCTAGTCTTCCTAGCTTTTCTCAACTGTTTCAAAATAAAACAACTAAAAACCGAAAGTGTCCAAAGAAGTCCATATTTTTCCTGGCATATGTGTCCTTCACGAAACAGTTGGCCGAATGTCTGCATCTCTCTCCTCTGCCTTATGTCTCAATCTCTAATCCTCAGAATTCCTATATCTCCCACTTCCTTCTGCTTCTTCTTCTTCTTCTGTCTTCATTCATATGCTTCTTATTCTTTTTCGTCTTCAGTTTCTAAATTAGTACTTGAACAGTGGTCGTCATTTTCATCTGGTTTTGAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>235 177 133 89 59 51 51 46 37 26 19 18 16 12 10 8 7 6 0</canonical_bands>
                <polymorphic_bands>235 177 170 89 59 51 51 46 26 19 18 16 12 10 8 7 6 0</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAGCCATCAATAATCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>ACGTCAATCAATACGAAAATTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAGCCATCAATAATCAAAACGCTACAAAAAAGGCATCATCCTTTTCGGAACATGTATAATTGTCAGCTACTCAGTTATTCACTACTATTAGTATAATTAGCGTTCATCCGTGCCTACGTGCATCCTCCCAGATGTTCCTCTTCTATCTTTTCTTCTTTCTCTATCTCTCTCTCTCTCTCTCCCTCTCCCTCTTCTCCCAATACTCTTGACCCAGATTCTATTACACTAATTTTCGTATTGATTGACGT</canonical_amplicon>
		<polymorphic_amplicon>AGAAGCCATCAATAATCAAAACGCTACAAAAAAGGCATCATCCTTTTCGGAACATGTATAATTGTCAGCTACTCAGTTATTCACTACTATTAGTATAAYTAGCGTTCATCCGTGCCTACGTGCATCCTCCCAGATGTTCCTCTTCTATCTTTTCTTCTTTCTCTATCTCTCTCTCTCTCTCTCCCTCTCCCTCTTCTCCCAATACTCTTGACCCAGATTCTATTACACTAATTTTCGTATTGATTGACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33197</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>319946</contig_pos>
        <strand>+</strand>
        <context>TACGACTGGT[G/T]CTGGGTCAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGATTTTATTGCTGAAATACTGGGTTGAAATTTATGGTTTACGACTGGT</left_flank>
        <right_flank>CTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGGAGATGCTGACAGCTCTTGACGGGTGCCTAGAAACCACTTCACTACTGAAACATCGGCCCCCACGGACCACGCGCATTTTGAAAATTTCTTTGCATTAGTTATTTCGGTCCCCTTCCCGCTCCACCAACACTTTCTCTCTGTTTTTGTGTGTGTCAACAACATATGGTTGATGCTCCGAAAGCAGAGCTCATTGTTTTTGAATTTACAAATAGTATATCCATGTTCCTTTATATGGGGGAAACCAAAATGCTCTGTGTGAAGAGCCCGACCGAGAGCATTTTGCGGGCATTTTGTGGTAAACAAGTGGGAAATGAAACGTATAAGAGGACGAGAAAAGAAAGGTCTGAATATGTCGACCTCCGTTACTAATCTTTCATTGTGCTCCGTCTTGTGTCCCGCCAGCTGCACAATTCACCTCGAAATGGTTGTGTACTAAGGACCACAGAAGATTTTATTGCTGAAATACTGGGTTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTT</canonical>
            <polymorphic>GTGGAGATGCTGACAGCTCTTGACGGGTGCCTAGAAACCACTTCACTACTGAAACATCGGCCCCCACGGACCACGCGCATTTTGAAAATTTCTTTGCATTAGTTATTTCGGTCCCCTTCCCGCTCCACCAACACTTTCTCTCTGTTTTTGTGTGTGTCAACAACATATGGTTGATGCTCCGAAAGCAGAGCTCATTGTTTTTGAATTTACAAATAGTATATCCATGTTCCTTTATATGGGGGAAACCAAAATGCTCTGTGTGAAGAGCCCGACCGAGAGCATTTTGCGGGCATTTTGTGGTAAACAAGTGGGAAATGAAACGTATAAGAGGACGAGAAAAGAAAGGTCTGAATATGTCGACCTCCGTTACTAATCTTTCATTGTGCTCCGTCTTGTGTCCCGCCAGCTGCACAATTCACCTCGAAATGGTTGTGTACTAAGGACCACAGAAGATTTTATTGCTGAAATACTGGGTTGAAATTTATGGTTTACGACTGGTKCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>113 104 83 75 67 57 54 54 44 37 31 28 26 25 21 20 19 19 16 14 12 12 11 11 8 7 7 6 5 5 3 2 2 2</canonical_bands>
                <polymorphic_bands>113 104 83 82 75 67 57 54 44 37 31 26 25 21 20 19 19 16 14 12 12 11 11 8 7 7 6 5 5 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCTCCGTTACTAATCTTTCATT</pcr_primer_p1>
		<pcr_primer_p2>CCCGAAATACGTAATCTGTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCTCCGTTACTAATCTTTCATTGTGCTCCGTCTTGTGTCCCGCCAGCTGCACAATTCACCTCGAAATGGTTGTGTACTAAGGACCACAGAAGATTTTATTGCTGAAATACTGGGTTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGG</canonical_amplicon>
		<polymorphic_amplicon>ACCTCCGTTACTAATCTTTCATTGTGCTCCGTCTTGTGTCCCGCCAGCTGCACAATTCACCTCGAAATGGTTGTGTACTAAGGACCACAGAAGATTTTATTGCTGAAATACTGGGTTGAAATTTATGGTTTACGACTGGTKCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33198</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>320068</contig_pos>
        <strand>+</strand>
        <context>GCCCCCTTTT[C/T]TGGGATAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTT</left_flank>
        <right_flank>TGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCACCAACACTTTCTCTCTGTTTTTGTGTGTGTCAACAACATATGGTTGATGCTCCGAAAGCAGAGCTCATTGTTTTTGAATTTACAAATAGTATATCCATGTTCCTTTATATGGGGGAAACCAAAATGCTCTGTGTGAAGAGCCCGACCGAGAGCATTTTGCGGGCATTTTGTGGTAAACAAGTGGGAAATGAAACGTATAAGAGGACGAGAAAAGAAAGGTCTGAATATGTCGACCTCCGTTACTAATCTTTCATTGTGCTCCGTCTTGTGTCCCGCCAGCTGCACAATTCACCTCGAAATGGTTGTGTACTAAGGACCACAGAAGATTTTATTGCTGAAATACTGGGTTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGAATATATATTCTTAGATATAAAATAGAATAACTAAATTAGTAG</canonical>
            <polymorphic>CTCCACCAACACTTTCTCTCTGTTTTTGTGTGTGTCAACAACATATGGTTGATGCTCCGAAAGCAGAGCTCATTGTTTTTGAATTTACAAATAGTATATCCATGTTCCTTTATATGGGGGAAACCAAAATGCTCTGTGTGAAGAGCCCGACCGAGAGCATTTTGCGGGCATTTTGTGGTAAACAAGTGGGAAATGAAACGTATAAGAGGACGAGAAAAGAAAGGTCTGAATATGTCGACCTCCGTTACTAATCTTTCATTGTGCTCCGTCTTGTGTCCCGCCAGCTGCACAATTCACCTCGAAATGGTTGTGTACTAAGGACCACAGAAGATTTTATTGCTGAAATACTGGGTTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTYTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGAATATATATTCTTAGATATAAAATAGAATAACTAAATTAGTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAAATTTATGGTTTACGACTG</pcr_primer_p1>
		<pcr_primer_p2>GTTGAGAAGTGAAGTGTTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAAC</canonical_amplicon>
		<polymorphic_amplicon>TTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTYTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33199</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>320091</contig_pos>
        <strand>+</strand>
        <context>CCTCTCACCA[A/G]TTTTTTTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCA</left_flank>
        <right_flank>TTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGTGTGTGTCAACAACATATGGTTGATGCTCCGAAAGCAGAGCTCATTGTTTTTGAATTTACAAATAGTATATCCATGTTCCTTTATATGGGGGAAACCAAAATGCTCTGTGTGAAGAGCCCGACCGAGAGCATTTTGCGGGCATTTTGTGGTAAACAAGTGGGAAATGAAACGTATAAGAGGACGAGAAAAGAAAGGTCTGAATATGTCGACCTCCGTTACTAATCTTTCATTGTGCTCCGTCTTGTGTCCCGCCAGCTGCACAATTCACCTCGAAATGGTTGTGTACTAAGGACCACAGAAGATTTTATTGCTGAAATACTGGGTTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGAATATATATTCTTAGATATAAAATAGAATAACTAAATTAGTAGAAATTACGAGTACAGCGCCGGAA</canonical>
            <polymorphic>TTTTGTGTGTGTCAACAACATATGGTTGATGCTCCGAAAGCAGAGCTCATTGTTTTTGAATTTACAAATAGTATATCCATGTTCCTTTATATGGGGGAAACCAAAATGCTCTGTGTGAAGAGCCCGACCGAGAGCATTTTGCGGGCATTTTGTGGTAAACAAGTGGGAAATGAAACGTATAAGAGGACGAGAAAAGAAAGGTCTGAATATGTCGACCTCCGTTACTAATCTTTCATTGTGCTCCGTCTTGTGTCCCGCCAGCTGCACAATTCACCTCGAAATGGTTGTGTACTAAGGACCACAGAAGATTTTATTGCTGAAATACTGGGTTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCARTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAACAATTTATTTATCTTAAAGTTCACTGTTGCAGGATTTACTATTTTTTATATGTTTCTGTCCTAGACTAGCTTTGTATGTGTTGCTGAACTACTATTGTTAACTTTCCGGTAGTTGAGTATGACACCGAAAAAAACGAGAACTAATAGTGAGAAAATACTAGAAAAAGTGCCATTGTTTTCATATGTTATCGCTGCTGTCTTTCAAATTTCCTAGACATTCATTTTCAATTGATACTGGAAATTTAAGTTCCACTACCTAAAAATGATAGTGAAACGTTTTTTTGTTCATTTTCCAATATGTTTTCATTATTTCAAATATTTTTATAGGTAGTAGTCTTGTTTTTCAAGCTTTATCTGGAATATATATTCTTAGATATAAAATAGAATAACTAAATTAGTAGAAATTACGAGTACAGCGCCGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAAATTTATGGTTTACGACTG</pcr_primer_p1>
		<pcr_primer_p2>GTTGAGAAGTGAAGTGTTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCATTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAAC</canonical_amplicon>
		<polymorphic_amplicon>TTGAAATTTATGGTTTACGACTGGTGCTGGGTCAGATTTTATTCTCTCTTTGCACTTTCATTTTATGTCAGTTGAACTATAGGTTTTCTCGAATTTAAAAATGTTTGTTTTTCTTAACAGATTACGTATTTCGGGCCGCCCCCTTTTCTGGGATAGAAAACCTCTCACCARTTTTTTTCTTACTCATTTCTATTTGAATTGAACCTTCTAGAGATTCTCTTAATTCTCAAAACACTTCACTTCTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33200</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>322211</contig_pos>
        <strand>+</strand>
        <context>TTGGAAAGCG[A/G]AGAAAAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAAGACTTTTATTTCCAACTCGACGACACCGATTTATGTTTGGAAAGCG</left_flank>
        <right_flank>AGAAAAAAAATACAAAAGTTATGACGCATTTTCCAGGCTTTTCCTGTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTACTCGGCCAGTTTCTCGAAAGAAAATTTACGAAAAAATGGAATATTGTCTTTCAACTTGATTTGCAGGTTTAATAACCATGAGATTCACATGAACTCGATGATAAACAGTTTAATTGACTTTTTTCCCAAAAAATGATTCCATTTTTTCCCAGGAAGCTATTTTCAGTATCAGGTTGCAGTTTTGTAAAGACTTGAGTTTCTTTTTTCATTTCTCAATTTTCTTGGTTTTCAGTTAAGGGTGTTAACTGAAAACTTACCAACCCATTCTTTTTAGTGTCTTCCGGAAAAGGGTATTACTCAATTTTGTCCTAACAGAAAAAAAAACAAAGATTTGAATATAAAAACCCAACATTTTCAATTTCCGGAATCCGCCTCTCCAATTTCCGAACGACCTTCCTTATTCCGCAACCTTTTTCCTATTACATATATTTTCACCCAAACCTTGCAAAGACTTTTATTTCCAACTCGACGACACCGATTTATGTTTGGAAAGCGGAGAAAAAAAATACAAAAGTTATGACGCATTTTCCAGGCTTTTCCTGTTTTTTCGTTGCCATTTTTGGAAAAAACCTCCAGTTTGCAAGTCATCTTTATGTATCTATTGTAATTGCAAAATCAGCCACGGTCCGGGTTAAAATTCTGAATATTCAAGAAGATTTCAATTTTTTTGGGAAAATTTTTTCAAACAACACTCCTTTTTTATAACTCTTATTATTTTTTGAATATTTTTTGACTCCAAATTTTTTTAAAAAAAATACAAAAAAAGAAACCCGGGCCGAGAAAATTCTGAAAAAAAAGCCAGATACGGCTCGGACGGGTCGTTGCAAGTATGGTATCCATCGCTATTTCAAAAATCCGTTCCATAAATGATAGTTCTTTTTCCTTTTTTTTTCGGTGACTGCTTTCACATCCCGACCGCCATGTAAGCTGTCGACTGACTGACCCCGTGCGTGTCTTCCGATTACACGTGGTATCTGGTTTGCATCGTAGGCCGAA</canonical>
            <polymorphic>AGTACTCGGCCAGTTTCTCGAAAGAAAATTTACGAAAAAATGGAATATTGTCTTTCAACTTGATTTGCAGGTTTAATAACCATGAGATTCACATGAACTCGATGATAAACAGTTTAATTGACTTTTTTCCCAAAAAATGATTCCATTTTTTCCCAGGAAGCTATTTTCAGTATCAGGTTGCAGTTTTGTAAAGACTTGAGTTTCTTTTTTCATTTCTCAATTTTCTTGGTTTTCAGTTAAGGGTGTTAACTGAAAACTTACCAACCCATTCTTTTTAGTGTCTTCCGGAAAAGGGTATTACTCAATTTTGTCCTAACAGAAAAAAAAACAAAGATTTGAATATAAAAACCCAACATTTTCAATTTCCGGAATCCGCCTCTCCAATTTCCGAACGACCTTCCTTATTCCGCAACCTTTTTCCTATTACATATATTTTCACCCAAACCTTGCAAAGACTTTTATTTCCAACTCGACGACACCGATTTATGTTTGGAAAGCGRAGAAAAAAAATACAAAAGTTATGACGCATTTTCCAGGCTTTTCCTGTTTTTTCGTTGCCATTTTTGGAAAAAACCTCCAGTTTGCAAGTCATCTTTATGTATCTATTGTAATTGCAAAATCAGCCACGGTCCGGGTTAAAATTCTGAATATTCAAGAAGATTTCAATTTTTTTGGGAAAATTTTTTCAAACAACACTCCTTTTTTATAACTCTTATTATTTTTTGAATATTTTTTGACTCCAAATTTTTTTAAAAAAAATACAAAAAAAGAAACCCGGGCCGAGAAAATTCTGAAAAAAAAGCCAGATACGGCTCGGACGGGTCGTTGCAAGTATGGTATCCATCGCTATTTCAAAAATCCGTTCCATAAATGATAGTTCTTTTTCCTTTTTTTTTCGGTGACTGCTTTCACATCCCGACCGCCATGTAAGCTGTCGACTGACTGACCCCGTGCGTGTCTTCCGATTACACGTGGTATCTGGTTTGCATCGTAGGCCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACCCAACATTTTCAATTTC</pcr_primer_p1>
		<pcr_primer_p2>TAAAGATGACTTGCAAACTGG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAACCCAACATTTTCAATTTCCGGAATCCGCCTCTCCAATTTCCGAACGACCTTCCTTATTCCGCAACCTTTTTCCTATTACATATATTTTCACCCAAACCTTGCAAAGACTTTTATTTCCAACTCGACGACACCGATTTATGTTTGGAAAGCGGAGAAAAAAAATACAAAAGTTATGACGCATTTTCCAGGCTTTTCCTGTTTTTTCGTTGCCATTTTTGGAAAAAACCTCCAGTTTGCAAGTCATCTTTA</canonical_amplicon>
		<polymorphic_amplicon>AAACCCAACATTTTCAATTTCCGGAATCCGCCTCTCCAATTTCCGAACGACCTTCCTTATTCCGCAACCTTTTTCCTATTACATATATTTTCACCCAAACCTTGCAAAGACTTTTATTTCCAACTCGACGACACCGATTTATGTTTGGAAAGCGRAGAAAAAAAATACAAAAGTTATGACGCATTTTCCAGGCTTTTCCTGTTTTTTCGTTGCCATTTTTGGAAAAAACCTCCAGTTTGCAAGTCATCTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33201</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>322463</contig_pos>
        <strand></strand>
        <context>aaattttttt[A/T]waaaaaatac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTATAACTCTTATTATTTTTTGAATATTTTTTGACTCCAAATTTTTTT</left_flank>
        <right_flank>AAAAAAATACAAAAAAAGAAACCCGGGCCGAGAAAATTCTGAAAAAAAAG</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACTTACCAACCCATTCTTTTTAGTGTCTTCCGGAAAAGGGTATTACTCAATTTTGTCCTAACAGAAAAAAAAACAAAGATTTGAATATAAAAACCCAACATTTTCAATTTCCGGAATCCGCCTCTCCAATTTCCGAACGACCTTCCTTATTCCGCAACCTTTTTCCTATTACATATATTTTCACCCAAACCTTGCAAAGACTTTTATTTCCAACTCGACGACACCGATTTATGTTTGGAAAGCGGAGAAAAAAAATACAAAAGTTATGACGCATTTTCCAGGCTTTTCCTGTTTTTTCGTTGCCATTTTTGGAAAAAACCTCCAGTTTGCAAGTCATCTTTATGTATCTATTGTAATTGCAAAATCAGCCACGGTCCGGGTTAAAATTCTGAATATTCAAGAAGATTTCAATTTTTTTGGGAAAATTTTTTCAAACAACACTCCTTTTTTATAACTCTTATTATTTTTTGAATATTTTTTGACTCCAAATTTTTTTAAAAAAAATACAAAAAAAGAAACCCGGGCCGAGAAAATTCTGAAAAAAAAGCCAGATACGGCTCGGACGGGTCGTTGCAAGTATGGTATCCATCGCTATTTCAAAAATCCGTTCCATAAATGATAGTTCTTTTTCCTTTTTTTTTCGGTGACTGCTTTCACATCCCGACCGCCATGTAAGCTGTCGACTGACTGACCCCGTGCGTGTCTTCCGATTACACGTGGTATCTGGTTTGCATCGTAGGCCGAAAGAAGAGGCTGAAGAATGGACATGGAAGACAGACACCCGATTTTCACTTTCGGACACTACTCTCGCACCATGACATCTCCCCCGCACGCACTCGTGTAAACATTTTCACATATGTTTTTTTTTCTCTCGCTTAATTCATTAGAGCCACATTGTGAGCAGAATTATATAGTATTTTGGAGGAAAATTTCAATTTCTCATTGTCAATGCCAAGATGTTGGCCTCTAAACAGTTGAATAATGGACAAAACCAATT</canonical>
            <polymorphic>AAAACTTACCAACCCATTCTTTTTAGTGTCTTCCGGAAAAGGGTATTACTCAATTTTGTCCTAACAGAAAAAAAAACAAAGATTTGAATATAAAAACCCAACATTTTCAATTTCCGGAATCCGCCTCTCCAATTTCCGAACGACCTTCCTTATTCCGCAACCTTTTTCCTATTACATATATTTTCACCCAAACCTTGCAAAGACTTTTATTTCCAACTCGACGACACCGATTTATGTTTGGAAAGCGGAGAAAAAAAATACAAAAGTTATGACGCATTTTCCAGGCTTTTCCTGTTTTTTCGTTGCCATTTTTGGAAAAAACCTCCAGTTTGCAAGTCATCTTTATGTATCTATTGTAATTGCAAAATCAGCCACGGTCCGGGTTAAAATTCTGAATATTCAAGAAGATTTCAATTTTTTTGGGAAAATTTTTTCAAACAACACTCCTTTTTTATAACTCTTATTATTTTTTGAATATTTTTTGACTCCAAATTTTTTTWAAAAAAATACAAAAAAAGAAACCCGGGCCGAGAAAATTCTGAAAAAAAAGCCAGATACGGCTCGGACGGGTCGTTGCAAGTATGGTATCCATCGCTATTTCAAAAATCCGTTCCATAAATGATAGTTCTTTTTCCTTTTTTTTTCGGTGACTGCTTTCACATCCCGACCGCCATGTAAGCTGTCGACTGACTGACCCCGTGCGTGTCTTCCGATTACACGTGGTATCTGGTTTGCATCGTAGGCCGAAAGAAGAGGCTGAAGAATGGACATGGAAGACAGACACCCGATTTTCACTTTCGGACACTACTCTCGCACCATGACATCTCCCCCGCACGCACTCGTGTAAACATTTTCACATATGTTTTTTTTTCTCTCGCTTAATTCATTAGAGCCACATTGTGAGCAGAATTATATAGTATTTTGGAGGAAAATTTCAATTTCTCATTGTCAATGCCAAGATGTTGGCCTCTAAACAGTTGAATAATGGACAAAACCAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>384 381 121 114</canonical_bands>
                <polymorphic_bands>495 384 121</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATCTATTGTAATTGCAAAATCAG</pcr_primer_p1>
		<pcr_primer_p2>TAGCGATGGATACCATACTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTATCTATTGTAATTGCAAAATCAGCCACGGTCCGGGTTAAAATTCTGAATATTCAAGAAGATTTCAATTTTTTTGGGAAAATTTTTTCAAACAACACTCCTTTTTTATAACTCTTATTATTTTTTGAATATTTTTTGACTCCAAATTTTTTTAAAAAAAATACAAAAAAAGAAACCCGGGCCGAGAAAATTCTGAAAAAAAAGCCAGATACGGCTCGGACGGGTCGTTGCAAGTATGGTATCCATCGCTA</canonical_amplicon>
		<polymorphic_amplicon>GTATCTATTGTAATTGCAAAATCAGCCACGGTCCGGGTTAAAATTCTGAATATTCAAGAAGATTTCAATTTTTTTGGGAAAATTTTTTCAAACAACACTCCTTTTTTATAACTCTTATTATTTTTTGAATATTTTTTGACTCCAAATTTTTTTWAAAAAAATACAAAAAAAGAAACCCGGGCCGAGAAAATTCTGAAAAAAAAGCCAGATACGGCTCGGACGGGTCGTTGCAAGTATGGTATCCATCGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33202</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>322464</contig_pos>
        <strand></strand>
        <context>aatttttttw[A/T]aaaaaataca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTATAACTCTTATTATTTTTTGAATATTTTTTGACTCCAAATTTTTTTA</left_flank>
        <right_flank>AAAAAATACAAAAAAAGAAACCCGGGCCGAGAAAATTCTGAAAAAAAAGC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTTACCAACCCATTCTTTTTAGTGTCTTCCGGAAAAGGGTATTACTCAATTTTGTCCTAACAGAAAAAAAAACAAAGATTTGAATATAAAAACCCAACATTTTCAATTTCCGGAATCCGCCTCTCCAATTTCCGAACGACCTTCCTTATTCCGCAACCTTTTTCCTATTACATATATTTTCACCCAAACCTTGCAAAGACTTTTATTTCCAACTCGACGACACCGATTTATGTTTGGAAAGCGGAGAAAAAAAATACAAAAGTTATGACGCATTTTCCAGGCTTTTCCTGTTTTTTCGTTGCCATTTTTGGAAAAAACCTCCAGTTTGCAAGTCATCTTTATGTATCTATTGTAATTGCAAAATCAGCCACGGTCCGGGTTAAAATTCTGAATATTCAAGAAGATTTCAATTTTTTTGGGAAAATTTTTTCAAACAACACTCCTTTTTTATAACTCTTATTATTTTTTGAATATTTTTTGACTCCAAATTTTTTTAAAAAAAATACAAAAAAAGAAACCCGGGCCGAGAAAATTCTGAAAAAAAAGCCAGATACGGCTCGGACGGGTCGTTGCAAGTATGGTATCCATCGCTATTTCAAAAATCCGTTCCATAAATGATAGTTCTTTTTCCTTTTTTTTTCGGTGACTGCTTTCACATCCCGACCGCCATGTAAGCTGTCGACTGACTGACCCCGTGCGTGTCTTCCGATTACACGTGGTATCTGGTTTGCATCGTAGGCCGAAAGAAGAGGCTGAAGAATGGACATGGAAGACAGACACCCGATTTTCACTTTCGGACACTACTCTCGCACCATGACATCTCCCCCGCACGCACTCGTGTAAACATTTTCACATATGTTTTTTTTTCTCTCGCTTAATTCATTAGAGCCACATTGTGAGCAGAATTATATAGTATTTTGGAGGAAAATTTCAATTTCTCATTGTCAATGCCAAGATGTTGGCCTCTAAACAGTTGAATAATGGACAAAACCAATTG</canonical>
            <polymorphic>AAACTTACCAACCCATTCTTTTTAGTGTCTTCCGGAAAAGGGTATTACTCAATTTTGTCCTAACAGAAAAAAAAACAAAGATTTGAATATAAAAACCCAACATTTTCAATTTCCGGAATCCGCCTCTCCAATTTCCGAACGACCTTCCTTATTCCGCAACCTTTTTCCTATTACATATATTTTCACCCAAACCTTGCAAAGACTTTTATTTCCAACTCGACGACACCGATTTATGTTTGGAAAGCGGAGAAAAAAAATACAAAAGTTATGACGCATTTTCCAGGCTTTTCCTGTTTTTTCGTTGCCATTTTTGGAAAAAACCTCCAGTTTGCAAGTCATCTTTATGTATCTATTGTAATTGCAAAATCAGCCACGGTCCGGGTTAAAATTCTGAATATTCAAGAAGATTTCAATTTTTTTGGGAAAATTTTTTCAAACAACACTCCTTTTTTATAACTCTTATTATTTTTTGAATATTTTTTGACTCCAAATTTTTTTAWAAAAAATACAAAAAAAGAAACCCGGGCCGAGAAAATTCTGAAAAAAAAGCCAGATACGGCTCGGACGGGTCGTTGCAAGTATGGTATCCATCGCTATTTCAAAAATCCGTTCCATAAATGATAGTTCTTTTTCCTTTTTTTTTCGGTGACTGCTTTCACATCCCGACCGCCATGTAAGCTGTCGACTGACTGACCCCGTGCGTGTCTTCCGATTACACGTGGTATCTGGTTTGCATCGTAGGCCGAAAGAAGAGGCTGAAGAATGGACATGGAAGACAGACACCCGATTTTCACTTTCGGACACTACTCTCGCACCATGACATCTCCCCCGCACGCACTCGTGTAAACATTTTCACATATGTTTTTTTTTCTCTCGCTTAATTCATTAGAGCCACATTGTGAGCAGAATTATATAGTATTTTGGAGGAAAATTTCAATTTCTCATTGTCAATGCCAAGATGTTGGCCTCTAAACAGTTGAATAATGGACAAAACCAATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>383 381 122 114</canonical_bands>
                <polymorphic_bands>495 383 122</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATCTATTGTAATTGCAAAATCAG</pcr_primer_p1>
		<pcr_primer_p2>TAGCGATGGATACCATACTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTATCTATTGTAATTGCAAAATCAGCCACGGTCCGGGTTAAAATTCTGAATATTCAAGAAGATTTCAATTTTTTTGGGAAAATTTTTTCAAACAACACTCCTTTTTTATAACTCTTATTATTTTTTGAATATTTTTTGACTCCAAATTTTTTTAAAAAAAATACAAAAAAAGAAACCCGGGCCGAGAAAATTCTGAAAAAAAAGCCAGATACGGCTCGGACGGGTCGTTGCAAGTATGGTATCCATCGCTA</canonical_amplicon>
		<polymorphic_amplicon>GTATCTATTGTAATTGCAAAATCAGCCACGGTCCGGGTTAAAATTCTGAATATTCAAGAAGATTTCAATTTTTTTGGGAAAATTTTTTCAAACAACACTCCTTTTTTATAACTCTTATTATTTTTTGAATATTTTTTGACTCCAAATTTTTTTAWAAAAAATACAAAAAAAGAAACCCGGGCCGAGAAAATTCTGAAAAAAAAGCCAGATACGGCTCGGACGGGTCGTTGCAAGTATGGTATCCATCGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33203</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>322505</contig_pos>
        <strand></strand>
        <context>GAAAATTCTG[A/G]AAAAAARGCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTTTTAAAAAAAATACAAAAAAAGAAACCCGGGCCGAGAAAATTCTG</left_flank>
        <right_flank>AAAAAAAGCCAGATACGGCTCGGACGGGTCGTTGCAAGTATGGTATCCAT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATTACTCAATTTTGTCCTAACAGAAAAAAAAACAAAGATTTGAATATAAAAACCCAACATTTTCAATTTCCGGAATCCGCCTCTCCAATTTCCGAACGACCTTCCTTATTCCGCAACCTTTTTCCTATTACATATATTTTCACCCAAACCTTGCAAAGACTTTTATTTCCAACTCGACGACACCGATTTATGTTTGGAAAGCGGAGAAAAAAAATACAAAAGTTATGACGCATTTTCCAGGCTTTTCCTGTTTTTTCGTTGCCATTTTTGGAAAAAACCTCCAGTTTGCAAGTCATCTTTATGTATCTATTGTAATTGCAAAATCAGCCACGGTCCGGGTTAAAATTCTGAATATTCAAGAAGATTTCAATTTTTTTGGGAAAATTTTTTCAAACAACACTCCTTTTTTATAACTCTTATTATTTTTTGAATATTTTTTGACTCCAAATTTTTTTAAAAAAAATACAAAAAAAGAAACCCGGGCCGAGAAAATTCTGAAAAAAAAGCCAGATACGGCTCGGACGGGTCGTTGCAAGTATGGTATCCATCGCTATTTCAAAAATCCGTTCCATAAATGATAGTTCTTTTTCCTTTTTTTTTCGGTGACTGCTTTCACATCCCGACCGCCATGTAAGCTGTCGACTGACTGACCCCGTGCGTGTCTTCCGATTACACGTGGTATCTGGTTTGCATCGTAGGCCGAAAGAAGAGGCTGAAGAATGGACATGGAAGACAGACACCCGATTTTCACTTTCGGACACTACTCTCGCACCATGACATCTCCCCCGCACGCACTCGTGTAAACATTTTCACATATGTTTTTTTTTCTCTCGCTTAATTCATTAGAGCCACATTGTGAGCAGAATTATATAGTATTTTGGAGGAAAATTTCAATTTCTCATTGTCAATGCCAAGATGTTGGCCTCTAAACAGTTGAATAATGGACAAAACCAATTGGAAACATTTTAAAAAAATGATTCTAATCTACAGTAATATCC</canonical>
            <polymorphic>GTATTACTCAATTTTGTCCTAACAGAAAAAAAAACAAAGATTTGAATATAAAAACCCAACATTTTCAATTTCCGGAATCCGCCTCTCCAATTTCCGAACGACCTTCCTTATTCCGCAACCTTTTTCCTATTACATATATTTTCACCCAAACCTTGCAAAGACTTTTATTTCCAACTCGACGACACCGATTTATGTTTGGAAAGCGGAGAAAAAAAATACAAAAGTTATGACGCATTTTCCAGGCTTTTCCTGTTTTTTCGTTGCCATTTTTGGAAAAAACCTCCAGTTTGCAAGTCATCTTTATGTATCTATTGTAATTGCAAAATCAGCCACGGTCCGGGTTAAAATTCTGAATATTCAAGAAGATTTCAATTTTTTTGGGAAAATTTTTTCAAACAACACTCCTTTTTTATAACTCTTATTATTTTTTGAATATTTTTTGACTCCAAATTTTTTTAAAAAAAATACAAAAAAAGAAACCCGGGCCGAGAAAATTCTGRAAAAAAAGCCAGATACGGCTCGGACGGGTCGTTGCAAGTATGGTATCCATCGCTATTTCAAAAATCCGTTCCATAAATGATAGTTCTTTTTCCTTTTTTTTTCGGTGACTGCTTTCACATCCCGACCGCCATGTAAGCTGTCGACTGACTGACCCCGTGCGTGTCTTCCGATTACACGTGGTATCTGGTTTGCATCGTAGGCCGAAAGAAGAGGCTGAAGAATGGACATGGAAGACAGACACCCGATTTTCACTTTCGGACACTACTCTCGCACCATGACATCTCCCCCGCACGCACTCGTGTAAACATTTTCACATATGTTTTTTTTTCTCTCGCTTAATTCATTAGAGCCACATTGTGAGCAGAATTATATAGTATTTTGGAGGAAAATTTCAATTTCTCATTGTCAATGCCAAGATGTTGGCCTCTAAACAGTTGAATAATGGACAAAACCAATTGGAAACATTTTAAAAAAATGATTCTAATCTACAGTAATATCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>256 242 147 147 95 89 24</canonical_bands>
                <polymorphic_bands>256 242 171 147 95 89</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATCTATTGTAATTGCAAAATCAG</pcr_primer_p1>
		<pcr_primer_p2>TAGCGATGGATACCATACTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTATCTATTGTAATTGCAAAATCAGCCACGGTCCGGGTTAAAATTCTGAATATTCAAGAAGATTTCAATTTTTTTGGGAAAATTTTTTCAAACAACACTCCTTTTTTATAACTCTTATTATTTTTTGAATATTTTTTGACTCCAAATTTTTTTAAAAAAAATACAAAAAAAGAAACCCGGGCCGAGAAAATTCTGAAAAAAAAGCCAGATACGGCTCGGACGGGTCGTTGCAAGTATGGTATCCATCGCTA</canonical_amplicon>
		<polymorphic_amplicon>GTATCTATTGTAATTGCAAAATCAGCCACGGTCCGGGTTAAAATTCTGAATATTCAAGAAGATTTCAATTTTTTTGGGAAAATTTTTTCAAACAACACTCCTTTTTTATAACTCTTATTATTTTTTGAATATTTTTTGACTCCAAATTTTTTTAAAAAAAATACAAAAAAAGAAACCCGGGCCGAGAAAATTCTGRAAAAAAAGCCAGATACGGCTCGGACGGGTCGTTGCAAGTATGGTATCCATCGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33204</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>322512</contig_pos>
        <strand>+</strand>
        <context>CTGRAAAAAA[A/G]GCCAGATACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAAAAAAATACAAAAAAAGAAACCCGGGCCGAGAAAATTCTGAAAAAAA</left_flank>
        <right_flank>GCCAGATACGGCTCGGACGGGTCGTTGCAAGTATGGTATCCATCGCTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAATTTTGTCCTAACAGAAAAAAAAACAAAGATTTGAATATAAAAACCCAACATTTTCAATTTCCGGAATCCGCCTCTCCAATTTCCGAACGACCTTCCTTATTCCGCAACCTTTTTCCTATTACATATATTTTCACCCAAACCTTGCAAAGACTTTTATTTCCAACTCGACGACACCGATTTATGTTTGGAAAGCGGAGAAAAAAAATACAAAAGTTATGACGCATTTTCCAGGCTTTTCCTGTTTTTTCGTTGCCATTTTTGGAAAAAACCTCCAGTTTGCAAGTCATCTTTATGTATCTATTGTAATTGCAAAATCAGCCACGGTCCGGGTTAAAATTCTGAATATTCAAGAAGATTTCAATTTTTTTGGGAAAATTTTTTCAAACAACACTCCTTTTTTATAACTCTTATTATTTTTTGAATATTTTTTGACTCCAAATTTTTTTAAAAAAAATACAAAAAAAGAAACCCGGGCCGAGAAAATTCTGAAAAAAAAGCCAGATACGGCTCGGACGGGTCGTTGCAAGTATGGTATCCATCGCTATTTCAAAAATCCGTTCCATAAATGATAGTTCTTTTTCCTTTTTTTTTCGGTGACTGCTTTCACATCCCGACCGCCATGTAAGCTGTCGACTGACTGACCCCGTGCGTGTCTTCCGATTACACGTGGTATCTGGTTTGCATCGTAGGCCGAAAGAAGAGGCTGAAGAATGGACATGGAAGACAGACACCCGATTTTCACTTTCGGACACTACTCTCGCACCATGACATCTCCCCCGCACGCACTCGTGTAAACATTTTCACATATGTTTTTTTTTCTCTCGCTTAATTCATTAGAGCCACATTGTGAGCAGAATTATATAGTATTTTGGAGGAAAATTTCAATTTCTCATTGTCAATGCCAAGATGTTGGCCTCTAAACAGTTGAATAATGGACAAAACCAATTGGAAACATTTTAAAAAAATGATTCTAATCTACAGTAATATCCTTTTTTC</canonical>
            <polymorphic>TCAATTTTGTCCTAACAGAAAAAAAAACAAAGATTTGAATATAAAAACCCAACATTTTCAATTTCCGGAATCCGCCTCTCCAATTTCCGAACGACCTTCCTTATTCCGCAACCTTTTTCCTATTACATATATTTTCACCCAAACCTTGCAAAGACTTTTATTTCCAACTCGACGACACCGATTTATGTTTGGAAAGCGGAGAAAAAAAATACAAAAGTTATGACGCATTTTCCAGGCTTTTCCTGTTTTTTCGTTGCCATTTTTGGAAAAAACCTCCAGTTTGCAAGTCATCTTTATGTATCTATTGTAATTGCAAAATCAGCCACGGTCCGGGTTAAAATTCTGAATATTCAAGAAGATTTCAATTTTTTTGGGAAAATTTTTTCAAACAACACTCCTTTTTTATAACTCTTATTATTTTTTGAATATTTTTTGACTCCAAATTTTTTTAAAAAAAATACAAAAAAAGAAACCCGGGCCGAGAAAATTCTGAAAAAAARGCCAGATACGGCTCGGACGGGTCGTTGCAAGTATGGTATCCATCGCTATTTCAAAAATCCGTTCCATAAATGATAGTTCTTTTTCCTTTTTTTTTCGGTGACTGCTTTCACATCCCGACCGCCATGTAAGCTGTCGACTGACTGACCCCGTGCGTGTCTTCCGATTACACGTGGTATCTGGTTTGCATCGTAGGCCGAAAGAAGAGGCTGAAGAATGGACATGGAAGACAGACACCCGATTTTCACTTTCGGACACTACTCTCGCACCATGACATCTCCCCCGCACGCACTCGTGTAAACATTTTCACATATGTTTTTTTTTCTCTCGCTTAATTCATTAGAGCCACATTGTGAGCAGAATTATATAGTATTTTGGAGGAAAATTTCAATTTCTCATTGTCAATGCCAAGATGTTGGCCTCTAAACAGTTGAATAATGGACAAAACCAATTGGAAACATTTTAAAAAAATGATTCTAATCTACAGTAATATCCTTTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>236 156 136 119 86 83 74 64 23 13 10</canonical_bands>
                <polymorphic_bands>236 156 136 119 86 83 74 64 33 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAAACAACACTCCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CAGTCAGTCGACAGCTTACAT</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAAACAACACTCCTTTTTTATAACTCTTATTATTTTTTGAATATTTTTTGACTCCAAATTTTTTTAAAAAAAATACAAAAAAAGAAACCCGGGCCGAGAAAATTCTGAAAAAAAAGCCAGATACGGCTCGGACGGGTCGTTGCAAGTATGGTATCCATCGCTATTTCAAAAATCCGTTCCATAAATGATAGTTCTTTTTCCTTTTTTTTTCGGTGACTGCTTTCACATCCCGACCGCCATGTAAGCTGTCGACTGACTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAAACAACACTCCTTTTTTATAACTCTTATTATTTTTTGAATATTTTTTGACTCCAAATTTTTTTAAAAAAAATACAAAAAAAGAAACCCGGGCCGAGAAAATTCTGAAAAAAARGCCAGATACGGCTCGGACGGGTCGTTGCAAGTATGGTATCCATCGCTATTTCAAAAATCCGTTCCATAAATGATAGTTCTTTTTCCTTTTTTTTTCGGTGACTGCTTTCACATCCCGACCGCCATGTAAGCTGTCGACTGACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33205</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>322592</contig_pos>
        <strand>+</strand>
        <context>ATGATAGTTC[C/T]TTTTCCTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTATGGTATCCATCGCTATTTCAAAAATCCGTTCCATAAATGATAGTTC</left_flank>
        <right_flank>TTTTCCTTTTTTTTTCGGTGACTGCTTTCACATCCCGACCGCCATGTAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTTCCGAACGACCTTCCTTATTCCGCAACCTTTTTCCTATTACATATATTTTCACCCAAACCTTGCAAAGACTTTTATTTCCAACTCGACGACACCGATTTATGTTTGGAAAGCGGAGAAAAAAAATACAAAAGTTATGACGCATTTTCCAGGCTTTTCCTGTTTTTTCGTTGCCATTTTTGGAAAAAACCTCCAGTTTGCAAGTCATCTTTATGTATCTATTGTAATTGCAAAATCAGCCACGGTCCGGGTTAAAATTCTGAATATTCAAGAAGATTTCAATTTTTTTGGGAAAATTTTTTCAAACAACACTCCTTTTTTATAACTCTTATTATTTTTTGAATATTTTTTGACTCCAAATTTTTTTAAAAAAAATACAAAAAAAGAAACCCGGGCCGAGAAAATTCTGAAAAAAAAGCCAGATACGGCTCGGACGGGTCGTTGCAAGTATGGTATCCATCGCTATTTCAAAAATCCGTTCCATAAATGATAGTTCTTTTTCCTTTTTTTTTCGGTGACTGCTTTCACATCCCGACCGCCATGTAAGCTGTCGACTGACTGACCCCGTGCGTGTCTTCCGATTACACGTGGTATCTGGTTTGCATCGTAGGCCGAAAGAAGAGGCTGAAGAATGGACATGGAAGACAGACACCCGATTTTCACTTTCGGACACTACTCTCGCACCATGACATCTCCCCCGCACGCACTCGTGTAAACATTTTCACATATGTTTTTTTTTCTCTCGCTTAATTCATTAGAGCCACATTGTGAGCAGAATTATATAGTATTTTGGAGGAAAATTTCAATTTCTCATTGTCAATGCCAAGATGTTGGCCTCTAAACAGTTGAATAATGGACAAAACCAATTGGAAACATTTTAAAAAAATGATTCTAATCTACAGTAATATCCTTTTTTCTCATTTTCTCGACCTTTTTTTATGAGGTTTCCCGTTCCCCTGATTTTTCATAATTCAATTGGAATTTCTAAAAATCCTAA</canonical>
            <polymorphic>CAATTTCCGAACGACCTTCCTTATTCCGCAACCTTTTTCCTATTACATATATTTTCACCCAAACCTTGCAAAGACTTTTATTTCCAACTCGACGACACCGATTTATGTTTGGAAAGCGGAGAAAAAAAATACAAAAGTTATGACGCATTTTCCAGGCTTTTCCTGTTTTTTCGTTGCCATTTTTGGAAAAAACCTCCAGTTTGCAAGTCATCTTTATGTATCTATTGTAATTGCAAAATCAGCCACGGTCCGGGTTAAAATTCTGAATATTCAAGAAGATTTCAATTTTTTTGGGAAAATTTTTTCAAACAACACTCCTTTTTTATAACTCTTATTATTTTTTGAATATTTTTTGACTCCAAATTTTTTTAAAAAAAATACAAAAAAAGAAACCCGGGCCGAGAAAATTCTGAAAAAAAAGCCAGATACGGCTCGGACGGGTCGTTGCAAGTATGGTATCCATCGCTATTTCAAAAATCCGTTCCATAAATGATAGTTCYTTTTCCTTTTTTTTTCGGTGACTGCTTTCACATCCCGACCGCCATGTAAGCTGTCGACTGACTGACCCCGTGCGTGTCTTCCGATTACACGTGGTATCTGGTTTGCATCGTAGGCCGAAAGAAGAGGCTGAAGAATGGACATGGAAGACAGACACCCGATTTTCACTTTCGGACACTACTCTCGCACCATGACATCTCCCCCGCACGCACTCGTGTAAACATTTTCACATATGTTTTTTTTTCTCTCGCTTAATTCATTAGAGCCACATTGTGAGCAGAATTATATAGTATTTTGGAGGAAAATTTCAATTTCTCATTGTCAATGCCAAGATGTTGGCCTCTAAACAGTTGAATAATGGACAAAACCAATTGGAAACATTTTAAAAAAATGATTCTAATCTACAGTAATATCCTTTTTTCTCATTTTCTCGACCTTTTTTTATGAGGTTTCCCGTTCCCCTGATTTTTCATAATTCAATTGGAATTTCTAAAAATCCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCGTTGCAAGTATGGTAT</pcr_primer_p1>
		<pcr_primer_p2>AGAGTAGTGTCCGAAAGTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GGTCGTTGCAAGTATGGTATCCATCGCTATTTCAAAAATCCGTTCCATAAATGATAGTTCTTTTTCCTTTTTTTTTCGGTGACTGCTTTCACATCCCGACCGCCATGTAAGCTGTCGACTGACTGACCCCGTGCGTGTCTTCCGATTACACGTGGTATCTGGTTTGCATCGTAGGCCGAAAGAAGAGGCTGAAGAATGGACATGGAAGACAGACACCCGATTTTCACTTTCGGACACTACTCT</canonical_amplicon>
		<polymorphic_amplicon>GGTCGTTGCAAGTATGGTATCCATCGCTATTTCAAAAATCCGTTCCATAAATGATAGTTCYTTTTCCTTTTTTTTTCGGTGACTGCTTTCACATCCCGACCGCCATGTAAGCTGTCGACTGACTGACCCCGTGCGTGTCTTCCGATTACACGTGGTATCTGGTTTGCATCGTAGGCCGAAAGAAGAGGCTGAAGAATGGACATGGAAGACAGACACCCGATTTTCACTTTCGGACACTACTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33206</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>322626</contig_pos>
        <strand></strand>
        <context>GCTTTCACAT[C/T]CCGACCGCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCATAAATGATAGTTCTTTTTCCTTTTTTTTTCGGTGACTGCTTTCACAT</left_flank>
        <right_flank>CCGACCGCCATGTAAGCTGTCGACTGACTGACCCCGTGCGTGTCTTCCGA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCCTATTACATATATTTTCACCCAAACCTTGCAAAGACTTTTATTTCCAACTCGACGACACCGATTTATGTTTGGAAAGCGGAGAAAAAAAATACAAAAGTTATGACGCATTTTCCAGGCTTTTCCTGTTTTTTCGTTGCCATTTTTGGAAAAAACCTCCAGTTTGCAAGTCATCTTTATGTATCTATTGTAATTGCAAAATCAGCCACGGTCCGGGTTAAAATTCTGAATATTCAAGAAGATTTCAATTTTTTTGGGAAAATTTTTTCAAACAACACTCCTTTTTTATAACTCTTATTATTTTTTGAATATTTTTTGACTCCAAATTTTTTTAAAAAAAATACAAAAAAAGAAACCCGGGCCGAGAAAATTCTGAAAAAAAAGCCAGATACGGCTCGGACGGGTCGTTGCAAGTATGGTATCCATCGCTATTTCAAAAATCCGTTCCATAAATGATAGTTCTTTTTCCTTTTTTTTTCGGTGACTGCTTTCACATCCCGACCGCCATGTAAGCTGTCGACTGACTGACCCCGTGCGTGTCTTCCGATTACACGTGGTATCTGGTTTGCATCGTAGGCCGAAAGAAGAGGCTGAAGAATGGACATGGAAGACAGACACCCGATTTTCACTTTCGGACACTACTCTCGCACCATGACATCTCCCCCGCACGCACTCGTGTAAACATTTTCACATATGTTTTTTTTTCTCTCGCTTAATTCATTAGAGCCACATTGTGAGCAGAATTATATAGTATTTTGGAGGAAAATTTCAATTTCTCATTGTCAATGCCAAGATGTTGGCCTCTAAACAGTTGAATAATGGACAAAACCAATTGGAAACATTTTAAAAAAATGATTCTAATCTACAGTAATATCCTTTTTTCTCATTTTCTCGACCTTTTTTTATGAGGTTTCCCGTTCCCCTGATTTTTCATAATTCAATTGGAATTTCTAAAAATCCTAAAAATTCGATTCCAAAGTTTGGCTTCTTAATCCGT</canonical>
            <polymorphic>TTTTCCTATTACATATATTTTCACCCAAACCTTGCAAAGACTTTTATTTCCAACTCGACGACACCGATTTATGTTTGGAAAGCGGAGAAAAAAAATACAAAAGTTATGACGCATTTTCCAGGCTTTTCCTGTTTTTTCGTTGCCATTTTTGGAAAAAACCTCCAGTTTGCAAGTCATCTTTATGTATCTATTGTAATTGCAAAATCAGCCACGGTCCGGGTTAAAATTCTGAATATTCAAGAAGATTTCAATTTTTTTGGGAAAATTTTTTCAAACAACACTCCTTTTTTATAACTCTTATTATTTTTTGAATATTTTTTGACTCCAAATTTTTTTAAAAAAAATACAAAAAAAGAAACCCGGGCCGAGAAAATTCTGAAAAAAAAGCCAGATACGGCTCGGACGGGTCGTTGCAAGTATGGTATCCATCGCTATTTCAAAAATCCGTTCCATAAATGATAGTTCTTTTTCCTTTTTTTTTCGGTGACTGCTTTCACATYCCGACCGCCATGTAAGCTGTCGACTGACTGACCCCGTGCGTGTCTTCCGATTACACGTGGTATCTGGTTTGCATCGTAGGCCGAAAGAAGAGGCTGAAGAATGGACATGGAAGACAGACACCCGATTTTCACTTTCGGACACTACTCTCGCACCATGACATCTCCCCCGCACGCACTCGTGTAAACATTTTCACATATGTTTTTTTTTCTCTCGCTTAATTCATTAGAGCCACATTGTGAGCAGAATTATATAGTATTTTGGAGGAAAATTTCAATTTCTCATTGTCAATGCCAAGATGTTGGCCTCTAAACAGTTGAATAATGGACAAAACCAATTGGAAACATTTTAAAAAAATGATTCTAATCTACAGTAATATCCTTTTTTCTCATTTTCTCGACCTTTTTTTATGAGGTTTCCCGTTCCCCTGATTTTTCATAATTCAATTGGAATTTCTAAAAATCCTAAAAATTCGATTCCAAAGTTTGGCTTCTTAATCCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>394 262 238 106</canonical_bands>
                <polymorphic_bands>656 238 106</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTATGGTATCCATCGCTATTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCATGGTGCGAGAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAGTATGGTATCCATCGCTATTTCAAAAATCCGTTCCATAAATGATAGTTCTTTTTCCTTTTTTTTTCGGTGACTGCTTTCACATCCCGACCGCCATGTAAGCTGTCGACTGACTGACCCCGTGCGTGTCTTCCGATTACACGTGGTATCTGGTTTGCATCGTAGGCCGAAAGAAGAGGCTGAAGAATGGACATGGAAGACAGACACCCGATTTTCACTTTCGGACACTACTCTCGCACCATGACAT</canonical_amplicon>
		<polymorphic_amplicon>AAGTATGGTATCCATCGCTATTTCAAAAATCCGTTCCATAAATGATAGTTCTTTTTCCTTTTTTTTTCGGTGACTGCTTTCACATYCCGACCGCCATGTAAGCTGTCGACTGACTGACCCCGTGCGTGTCTTCCGATTACACGTGGTATCTGGTTTGCATCGTAGGCCGAAAGAAGAGGCTGAAGAATGGACATGGAAGACAGACACCCGATTTTCACTTTCGGACACTACTCTCGCACCATGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33207</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>359355</contig_pos>
        <strand>+</strand>
        <context>TCATGCGCAA[C/T]TTGCTGTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGATTTCTGTAGGCAAGGCTGTCAAAAACATGATCCAGGTCATGCGCAA</left_flank>
        <right_flank>TTGCTGTTGACCATAACGAAAGCGCTATTTAAAAAAAATTGCGGCCAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCGTAGTTTGAAACGCCACCGCATGGTTTCTGAGTGGCGCAGCACAAAAATTTTCGTATCTTTTTTCATCTCAAGTTACTGAAAGACGAAAGAACAATGCAATCAAATTGTTGTTTTTAAATTGTCTCTTAATTTGTTCAAATAATAATTTTTGTAGATAATCAATGCTTTCAAATAATAAAATACTGTGTACTGACATTGAAAAGCTTGTGAGCGTGCGCCTGGATCGATTCGAAGTCTTCCAAATTGATTCCAAATGTCGTGTGAGCTGGTTTTTTTTCGTAGATGGATTTGATAACAGCGCCGTTGATTTTGAGCTCCGCGAGAGTTCTGAATGTTTCGGCATGCTCGCTGGGCTTCAAGAACTTTCCCACCCAGAGACGAACATCCTCTACCTGAAAATACCAATGAATTACATTTTTCTGATTTTGCAAATTTTCGTAAATTTCGATTTCTGTAGGCAAGGCTGTCAAAAACATGATCCAGGTCATGCGCAATTTGCTGTTGACCATAACGAAAGCGCTATTTAAAAAAAATTGCGGCCAACTGTTCGATAGCCCTGTTTTCAGCTCTCTAAGGGCATCGAAACTGTGTTTTAATGGCGATTTTGAGACATTTTCATTTTCATGCAGATATTGCTGGAATAAAGAAGAAGGACCTTGAAACTTTTTTCAGAGGGAAAGACGCTATCAATTCTTTGGTTTTTTTTTTGTGATTCAGGCAAAACCAAAATCCCCAATTCGATGCTGCATCGTCCATCAAAAATGCAAAATTTTTCTAGACTTTTTCGCTAGTCCACGGCCAACCGAGCAAGACCGTTGCAGGAAATCCCATTCGAATTCAATATTGAAGAAATTTCTCGAGCTCAGATTAAAGAAGCGTGGAATTTTCTGAATGGGTCTCGCTCGGCTGGCAGAGGACTAGAAAAATGGACTAGAAAACGGCAGCATTGTTAATTGCAGGTGCCGCAGCAAATTGCTGATTTTGTTTCTCTATGA</canonical>
            <polymorphic>AAGCGTAGTTTGAAACGCCACCGCATGGTTTCTGAGTGGCGCAGCACAAAAATTTTCGTATCTTTTTTCATCTCAAGTTACTGAAAGACGAAAGAACAATGCAATCAAATTGTTGTTTTTAAATTGTCTCTTAATTTGTTCAAATAATAATTTTTGTAGATAATCAATGCTTTCAAATAATAAAATACTGTGTACTGACATTGAAAAGCTTGTGAGCGTGCGCCTGGATCGATTCGAAGTCTTCCAAATTGATTCCAAATGTCGTGTGAGCTGGTTTTTTTTCGTAGATGGATTTGATAACAGCGCCGTTGATTTTGAGCTCCGCGAGAGTTCTGAATGTTTCGGCATGCTCGCTGGGCTTCAAGAACTTTCCCACCCAGAGACGAACATCCTCTACCTGAAAATACCAATGAATTACATTTTTCTGATTTTGCAAATTTTCGTAAATTTCGATTTCTGTAGGCAAGGCTGTCAAAAACATGATCCAGGTCATGCGCAAYTTGCTGTTGACCATAACGAAAGCGCTATTTAAAAAAAATTGCGGCCAACTGTTCGATAGCCCTGTTTTCAGCTCTCTAAGGGCATCGAAACTGTGTTTTAATGGCGATTTTGAGACATTTTCATTTTCATGCAGATATTGCTGGAATAAAGAAGAAGGACCTTGAAACTTTTTTCAGAGGGAAAGACGCTATCAATTCTTTGGTTTTTTTTTTGTGATTCAGGCAAAACCAAAATCCCCAATTCGATGCTGCATCGTCCATCAAAAATGCAAAATTTTTCTAGACTTTTTCGCTAGTCCACGGCCAACCGAGCAAGACCGTTGCAGGAAATCCCATTCGAATTCAATATTGAAGAAATTTCTCGAGCTCAGATTAAAGAAGCGTGGAATTTTCTGAATGGGTCTCGCTCGGCTGGCAGAGGACTAGAAAAATGGACTAGAAAACGGCAGCATTGTTAATTGCAGGTGCCGCAGCAAATTGCTGATTTTGTTTCTCTATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>166 157 98 70 67 57 52 50 46 39 33 31 25 23 19 16 16 14 11 10</canonical_bands>
                <polymorphic_bands>166 157 98 91 70 67 57 50 46 33 31 25 23 19 16 16 14 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAATGAATTACATTTTTCTGAT</pcr_primer_p1>
		<pcr_primer_p2>TTCTTCTTTATTCCAGCAATATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAATGAATTACATTTTTCTGATTTTGCAAATTTTCGTAAATTTCGATTTCTGTAGGCAAGGCTGTCAAAAACATGATCCAGGTCATGCGCAATTTGCTGTTGACCATAACGAAAGCGCTATTTAAAAAAAATTGCGGCCAACTGTTCGATAGCCCTGTTTTCAGCTCTCTAAGGGCATCGAAACTGTGTTTTAATGGCGATTTTGAGACATTTTCATTTTCATGCAGATATTGCTGGAATAAAGAAGAA</canonical_amplicon>
		<polymorphic_amplicon>CCAATGAATTACATTTTTCTGATTTTGCAAATTTTCGTAAATTTCGATTTCTGTAGGCAAGGCTGTCAAAAACATGATCCAGGTCATGCGCAAYTTGCTGTTGACCATAACGAAAGCGCTATTTAAAAAAAATTGCGGCCAACTGTTCGATAGCCCTGTTTTCAGCTCTCTAAGGGCATCGAAACTGTGTTTTAATGGCGATTTTGAGACATTTTCATTTTCATGCAGATATTGCTGGAATAAAGAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33208</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>362025</contig_pos>
        <strand>+</strand>
        <context>ATTCTAGAAG[A/C]AGGGGAATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAATAGCTCTTGAATGGGTAGGTCTTTTAATTCAGGAATTATTCTAGAAG</left_flank>
        <right_flank>AGGGGAATGAGCATAAATACGGAAGATAAAAAGAGGTCTAATAAAACTTT</right_flank>
        <qual_score>145</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTGCATTCTTCTGTATTGATCAATTGGGGTTACACATGTATTGGGCGATACTAGATAATGAGATCAGTGGAAAATTTAAAAATACCAGCATGTTTGGTTCACTGGAAATTATTCACGAAGGACAGAGATTCAAATAAACGGATAAAATGGCAAATCGGGGAAAATAAATGAAATTCTCAGCTGAGATTACCAACTTTTGTAATTTCTAAAACATGAGAAAAATTATCAAAAAATGTGATGGGAGGACATAATAACATAATTATAAGCGCAATTTGATAAAGGGGGGGGGGTGGAGATCTCACTCACAGGGGTTCAATGACACGTGTCTATTAGATAATTTCTAAAAAACAAGAAATTAAAACTTTTCAAATAATAGTATCAACACTATCACCAAGATTAAAGGAAACCATATGGAGATGGTGGGAGAAACTATTTGACAAAGGACTCAGAATAGCTCTTGAATGGGTAGGTCTTTTAATTCAGGAATTATTCTAGAAGAAGGGGAATGAGCATAAATACGGAAGATAAAAAGAGGTCTAATAAAACTTTTCACAACATACATATACGAGAGAATTCTAACCATATTCAAGGGCAATAAAATAATAATATTGATCAGTGTGGAGGTCAAAGCAGATTTTGATGTTCGAAAATCTTTACAATGAAGGAGCTTCCGCCGATGCATCTTGTCCCTGAAAAACATATGTCATCAGTTGAGATATGTACAGTTAGATGTAAAAACAAGTAGATTTATCAAAATTATTGTATCTTCATAATTAGTAGGTAAAAAAGTTTCGCTTTGATTTAATGAAAATCTATCAATTGTGAAATGGTTGAATGACTACGTGACAAAATAAAATTACTGACAGTTTACTATATTACGGGAATTCAGTTCGGTTTGAGCTTTAAGTTTTGAATTTTTATAATTGAAATACAAAAACTCACTAGACGTGTGTTTGGCGCAGCTTCATAATCATTGGTATTCGGATTCGCAGATGACAC</canonical>
            <polymorphic>CGTGCATTCTTCTGTATTGATCAATTGGGGTTACACATGTATTGGGCGATACTAGATAATGAGATCAGTGGAAAATTTAAAAATACCAGCATGTTTGGTTCACTGGAAATTATTCACGAAGGACAGAGATTCAAATAAACGGATAAAATGGCAAATCGGGGAAAATAAATGAAATTCTCAGCTGAGATTACCAACTTTTGTAATTTCTAAAACATGAGAAAAATTATCAAAAAATGTGATGGGAGGACATAATAACATAATTATAAGCGCAATTTGATAAAGGGGGGGGGGTGGAGATCTCACTCACAGGGGTTCAATGACACGTGTCTATTAGATAATTTCTAAAAAACAAGAAATTAAAACTTTTCAAATAATAGTATCAACACTATCACCAAGATTAAAGGAAACCATATGGAGATGGTGGGAGAAACTATTTGACAAAGGACTCAGAATAGCTCTTGAATGGGTAGGTCTTTTAATTCAGGAATTATTCTAGAAGMAGGGGAATGAGCATAAATACGGAAGATAAAAAGAGGTCTAATAAAACTTTTCACAACATACATATACGAGAGAATTCTAACCATATTCAAGGGCAATAAAATAATAATATTGATCAGTGTGGAGGTCAAAGCAGATTTTGATGTTCGAAAATCTTTACAATGAAGGAGCTTCCGCCGATGCATCTTGTCCCTGAAAAACATATGTCATCAGTTGAGATATGTACAGTTAGATGTAAAAACAAGTAGATTTATCAAAATTATTGTATCTTCATAATTAGTAGGTAAAAAAGTTTCGCTTTGATTTAATGAAAATCTATCAATTGTGAAATGGTTGAATGACTACGTGACAAAATAAAATTACTGACAGTTTACTATATTACGGGAATTCAGTTCGGTTTGAGCTTTAAGTTTTGAATTTTTATAATTGAAATACAAAAACTCACTAGACGTGTGTTTGGCGCAGCTTCATAATCATTGGTATTCGGATTCGCAGATGACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACTATTTGACAAAGGACTCA</pcr_primer_p1>
		<pcr_primer_p2>GAAGCTCCTTCATTGTAAAGATT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAACTATTTGACAAAGGACTCAGAATAGCTCTTGAATGGGTAGGTCTTTTAATTCAGGAATTATTCTAGAAGAAGGGGAATGAGCATAAATACGGAAGATAAAAAGAGGTCTAATAAAACTTTTCACAACATACATATACGAGAGAATTCTAACCATATTCAAGGGCAATAAAATAATAATATTGATCAGTGTGGAGGTCAAAGCAGATTTTGATGTTCGAAAATCTTTACAATGAAGGAGCTTC</canonical_amplicon>
		<polymorphic_amplicon>GAAACTATTTGACAAAGGACTCAGAATAGCTCTTGAATGGGTAGGTCTTTTAATTCAGGAATTATTCTAGAAGMAGGGGAATGAGCATAAATACGGAAGATAAAAAGAGGTCTAATAAAACTTTTCACAACATACATATACGAGAGAATTCTAACCATATTCAAGGGCAATAAAATAATAATATTGATCAGTGTGGAGGTCAAAGCAGATTTTGATGTTCGAAAATCTTTACAATGAAGGAGCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33209</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>362103</contig_pos>
        <strand>+</strand>
        <context>GAGAGAATTC[C/T]AACCATATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAGAGGTCTAATAAAACTTTTCACAACATACATATACGAGAGAATTC</left_flank>
        <right_flank>AACCATATTCAAGGGCAATAAAATAATAATATTGATCAGTGTGGAGGTCA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATACCAGCATGTTTGGTTCACTGGAAATTATTCACGAAGGACAGAGATTCAAATAAACGGATAAAATGGCAAATCGGGGAAAATAAATGAAATTCTCAGCTGAGATTACCAACTTTTGTAATTTCTAAAACATGAGAAAAATTATCAAAAAATGTGATGGGAGGACATAATAACATAATTATAAGCGCAATTTGATAAAGGGGGGGGGGTGGAGATCTCACTCACAGGGGTTCAATGACACGTGTCTATTAGATAATTTCTAAAAAACAAGAAATTAAAACTTTTCAAATAATAGTATCAACACTATCACCAAGATTAAAGGAAACCATATGGAGATGGTGGGAGAAACTATTTGACAAAGGACTCAGAATAGCTCTTGAATGGGTAGGTCTTTTAATTCAGGAATTATTCTAGAAGAAGGGGAATGAGCATAAATACGGAAGATAAAAAGAGGTCTAATAAAACTTTTCACAACATACATATACGAGAGAATTCTAACCATATTCAAGGGCAATAAAATAATAATATTGATCAGTGTGGAGGTCAAAGCAGATTTTGATGTTCGAAAATCTTTACAATGAAGGAGCTTCCGCCGATGCATCTTGTCCCTGAAAAACATATGTCATCAGTTGAGATATGTACAGTTAGATGTAAAAACAAGTAGATTTATCAAAATTATTGTATCTTCATAATTAGTAGGTAAAAAAGTTTCGCTTTGATTTAATGAAAATCTATCAATTGTGAAATGGTTGAATGACTACGTGACAAAATAAAATTACTGACAGTTTACTATATTACGGGAATTCAGTTCGGTTTGAGCTTTAAGTTTTGAATTTTTATAATTGAAATACAAAAACTCACTAGACGTGTGTTTGGCGCAGCTTCATAATCATTGGTATTCGGATTCGCAGATGACACTGGAGACTGGAGGGCCGAAAAAAGGCCATGAGTGTAGACGTCGGATTGATTTCCGTTTTCAGATGATTCTCCGAGTTG</canonical>
            <polymorphic>AAAAATACCAGCATGTTTGGTTCACTGGAAATTATTCACGAAGGACAGAGATTCAAATAAACGGATAAAATGGCAAATCGGGGAAAATAAATGAAATTCTCAGCTGAGATTACCAACTTTTGTAATTTCTAAAACATGAGAAAAATTATCAAAAAATGTGATGGGAGGACATAATAACATAATTATAAGCGCAATTTGATAAAGGGGGGGGGGTGGAGATCTCACTCACAGGGGTTCAATGACACGTGTCTATTAGATAATTTCTAAAAAACAAGAAATTAAAACTTTTCAAATAATAGTATCAACACTATCACCAAGATTAAAGGAAACCATATGGAGATGGTGGGAGAAACTATTTGACAAAGGACTCAGAATAGCTCTTGAATGGGTAGGTCTTTTAATTCAGGAATTATTCTAGAAGAAGGGGAATGAGCATAAATACGGAAGATAAAAAGAGGTCTAATAAAACTTTTCACAACATACATATACGAGAGAATTCYAACCATATTCAAGGGCAATAAAATAATAATATTGATCAGTGTGGAGGTCAAAGCAGATTTTGATGTTCGAAAATCTTTACAATGAAGGAGCTTCCGCCGATGCATCTTGTCCCTGAAAAACATATGTCATCAGTTGAGATATGTACAGTTAGATGTAAAAACAAGTAGATTTATCAAAATTATTGTATCTTCATAATTAGTAGGTAAAAAAGTTTCGCTTTGATTTAATGAAAATCTATCAATTGTGAAATGGTTGAATGACTACGTGACAAAATAAAATTACTGACAGTTTACTATATTACGGGAATTCAGTTCGGTTTGAGCTTTAAGTTTTGAATTTTTATAATTGAAATACAAAAACTCACTAGACGTGTGTTTGGCGCAGCTTCATAATCATTGGTATTCGGATTCGCAGATGACACTGGAGACTGGAGGGCCGAAAAAAGGCCATGAGTGTAGACGTCGGATTGATTTCCGTTTTCAGATGATTCTCCGAGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACTATTTGACAAAGGACTCA</pcr_primer_p1>
		<pcr_primer_p2>GAAGCTCCTTCATTGTAAAGATT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAACTATTTGACAAAGGACTCAGAATAGCTCTTGAATGGGTAGGTCTTTTAATTCAGGAATTATTCTAGAAGAAGGGGAATGAGCATAAATACGGAAGATAAAAAGAGGTCTAATAAAACTTTTCACAACATACATATACGAGAGAATTCTAACCATATTCAAGGGCAATAAAATAATAATATTGATCAGTGTGGAGGTCAAAGCAGATTTTGATGTTCGAAAATCTTTACAATGAAGGAGCTTC</canonical_amplicon>
		<polymorphic_amplicon>GAAACTATTTGACAAAGGACTCAGAATAGCTCTTGAATGGGTAGGTCTTTTAATTCAGGAATTATTCTAGAAGAAGGGGAATGAGCATAAATACGGAAGATAAAAAGAGGTCTAATAAAACTTTTCACAACATACATATACGAGAGAATTCYAACCATATTCAAGGGCAATAAAATAATAATATTGATCAGTGTGGAGGTCAAAGCAGATTTTGATGTTCGAAAATCTTTACAATGAAGGAGCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33210</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>378409</contig_pos>
        <strand>+</strand>
        <context>aACTTTTTCG[C/T]CAATTTTAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACGTATTTTCCCCTCAATTTTTGCTTTTTCATCAATTTTAACTTTTTCG</left_flank>
        <right_flank>CAATTTTAACTTTTTCAAAGTGACCGGAAGCTTGACAGCCATCTCTAGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACCTGTTAAAAAGGCTAGAAACACCAAACGTGATCAAATTGTGTACTCGGAATACACTGGACGTCCACGTCGAGCATGCAAGGAGGAAAGATTGGATGGTCGAGTGAAGGCGTTTTCAAAAAGAAGCGGAGAATCCCTTGATGTGGTAGTTGTTCAAACCAAACGGAAAAGGTTTCGACGAATGAAGAGAGAACCTGCATGGCCATTTTTTCTAACAATGCTCCACGCGTTCCCCAACGATGATATATCCAAATATGCAGTTTATTTCAATTCAATCAATAATTGGGCGGTGCAATACCCATACCCAGTTTGGGTTGAGACCTTTCGTTGGATAAATATACGCCTTGAGGATCGGAAAAATGAGATTGAACGCTACTTGCAAGACAGTGAGTTTTTCAATTTTTTCAATTCCTTCAACTTACAGTACGGGACAATGAGAAATACACAAACGTATTTTCCCCTCAATTTTTGCTTTTTCATCAATTTTAACTTTTTCGCCAATTTTAACTTTTTCAAAGTGACCGGAAGCTTGACAGCCATCTCTAGAATTCAGAGAATGGTCAAAATTTCCAAAATCGATTGAAAAAAAAAATTTTTTTTGAAAAAATTAAAAAAAAAGTTTTCGTATTTATTATAGACCGGTACTGTGAGCCTAAAATTCCAGAGCGCCCAGATATGTTTGTGAACACACCGATCAACAAGCAACCAGACATCATGTTGAAATTCATGGAACTTTTCAACTGGAAATTGATCCCATTCCACAAGTTCTACATTTACATTCGTGAGGATATTACCACTATTCAGTTGTGGAATAAAGCTGTGTTTGTGGAGTTCCCAATTGGAACAAATGATCTCAGTGGGATCTTGAAGCAATTGACCCCATTCATTGCATGTCTTTATGAAGCAAGAGTGTTCAGTATTGGTGTGAAGATCTTCGGTAAAATGAAATTCTAAATTCGACTTCTAAATTGTTTTTTGTTGCAGGAAGCGCAAAGGAA</canonical>
            <polymorphic>AAACCTGTTAAAAAGGCTAGAAACACCAAACGTGATCAAATTGTGTACTCGGAATACACTGGACGTCCACGTCGAGCATGCAAGGAGGAAAGATTGGATGGTCGAGTGAAGGCGTTTTCAAAAAGAAGCGGAGAATCCCTTGATGTGGTAGTTGTTCAAACCAAACGGAAAAGGTTTCGACGAATGAAGAGAGAACCTGCATGGCCATTTTTTCTAACAATGCTCCACGCGTTCCCCAACGATGATATATCCAAATATGCAGTTTATTTCAATTCAATCAATAATTGGGCGGTGCAATACCCATACCCAGTTTGGGTTGAGACCTTTCGTTGGATAAATATACGCCTTGAGGATCGGAAAAATGAGATTGAACGCTACTTGCAAGACAGTGAGTTTTTCAATTTTTTCAATTCCTTCAACTTACAGTACGGGACAATGAGAAATACACAAACGTATTTTCCCCTCAATTTTTGCTTTTTCATCAATTTTAACTTTTTCGYCAATTTTAACTTTTTCAAAGTGACCGGAAGCTTGACAGCCATCTCTAGAATTCAGAGAATGGTCAAAATTTCCAAAATCGATTGAAAAAAAAAATTTTTTTTGAAAAAATTAAAAAAAAAGTTTTCGTATTTATTATAGACCGGTACTGTGAGCCTAAAATTCCAGAGCGCCCAGATATGTTTGTGAACACACCGATCAACAAGCAACCAGACATCATGTTGAAATTCATGGAACTTTTCAACTGGAAATTGATCCCATTCCACAAGTTCTACATTTACATTCGTGAGGATATTACCACTATTCAGTTGTGGAATAAAGCTGTGTTTGTGGAGTTCCCAATTGGAACAAATGATCTCAGTGGGATCTTGAAGCAATTGACCCCATTCATTGCATGTCTTTATGAAGCAAGAGTGTTCAGTATTGGTGTGAAGATCTTCGGTAAAATGAAATTCTAAATTCGACTTCTAAATTGTTTTTTGTTGCAGGAAGCGCAAAGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAAGACAGTGAGTTTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>CCGGTCTATAATAAATACGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>GCAAGACAGTGAGTTTTTCAATTTTTTCAATTCCTTCAACTTACAGTACGGGACAATGAGAAATACACAAACGTATTTTCCCCTCAATTTTTGCTTTTTCATCAATTTTAACTTTTTCGCCAATTTTAACTTTTTCAAAGTGACCGGAAGCTTGACAGCCATCTCTAGAATTCAGAGAATGGTCAAAATTTCCAAAATCGATTGAAAAAAAAAATTTTTTTTGAAAAAATTAAAAAAAAAGTTTTCGTATTTATTATAGACCGG</canonical_amplicon>
		<polymorphic_amplicon>GCAAGACAGTGAGTTTTTCAATTTTTTCAATTCCTTCAACTTACAGTACGGGACAATGAGAAATACACAAACGTATTTTCCCCTCAATTTTTGCTTTTTCATCAATTTTAACTTTTTCGYCAATTTTAACTTTTTCAAAGTGACCGGAAGCTTGACAGCCATCTCTAGAATTCAGAGAATGGTCAAAATTTCCAAAATCGATTGAAAAAAAAAATTTTTTTTGAAAAAATTAAAAAAAAAGTTTTCGTATTTATTATAGACCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33211</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>378475</contig_pos>
        <strand></strand>
        <context>agaatggtca[A/T]aatttccaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAAGTGACCGGAAGCTTGACAGCCATCTCTAGAATTCAGAGAATGGTCA</left_flank>
        <right_flank>AATTTCCAAAATCGATTGAAAAAAAAAATTTTTTTTGAAAAAATTAAAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCACGTCGAGCATGCAAGGAGGAAAGATTGGATGGTCGAGTGAAGGCGTTTTCAAAAAGAAGCGGAGAATCCCTTGATGTGGTAGTTGTTCAAACCAAACGGAAAAGGTTTCGACGAATGAAGAGAGAACCTGCATGGCCATTTTTTCTAACAATGCTCCACGCGTTCCCCAACGATGATATATCCAAATATGCAGTTTATTTCAATTCAATCAATAATTGGGCGGTGCAATACCCATACCCAGTTTGGGTTGAGACCTTTCGTTGGATAAATATACGCCTTGAGGATCGGAAAAATGAGATTGAACGCTACTTGCAAGACAGTGAGTTTTTCAATTTTTTCAATTCCTTCAACTTACAGTACGGGACAATGAGAAATACACAAACGTATTTTCCCCTCAATTTTTGCTTTTTCATCAATTTTAACTTTTTCGCCAATTTTAACTTTTTCAAAGTGACCGGAAGCTTGACAGCCATCTCTAGAATTCAGAGAATGGTCAAAATTTCCAAAATCGATTGAAAAAAAAAATTTTTTTTGAAAAAATTAAAAAAAAAGTTTTCGTATTTATTATAGACCGGTACTGTGAGCCTAAAATTCCAGAGCGCCCAGATATGTTTGTGAACACACCGATCAACAAGCAACCAGACATCATGTTGAAATTCATGGAACTTTTCAACTGGAAATTGATCCCATTCCACAAGTTCTACATTTACATTCGTGAGGATATTACCACTATTCAGTTGTGGAATAAAGCTGTGTTTGTGGAGTTCCCAATTGGAACAAATGATCTCAGTGGGATCTTGAAGCAATTGACCCCATTCATTGCATGTCTTTATGAAGCAAGAGTGTTCAGTATTGGTGTGAAGATCTTCGGTAAAATGAAATTCTAAATTCGACTTCTAAATTGTTTTTTGTTGCAGGAAGCGCAAAGGAATTGATGAAAAGATTTAAAAACTATCTCAACAAAGACAAAAAATTTGAACGTGATCCTGTCAAATAT</canonical>
            <polymorphic>CCACGTCGAGCATGCAAGGAGGAAAGATTGGATGGTCGAGTGAAGGCGTTTTCAAAAAGAAGCGGAGAATCCCTTGATGTGGTAGTTGTTCAAACCAAACGGAAAAGGTTTCGACGAATGAAGAGAGAACCTGCATGGCCATTTTTTCTAACAATGCTCCACGCGTTCCCCAACGATGATATATCCAAATATGCAGTTTATTTCAATTCAATCAATAATTGGGCGGTGCAATACCCATACCCAGTTTGGGTTGAGACCTTTCGTTGGATAAATATACGCCTTGAGGATCGGAAAAATGAGATTGAACGCTACTTGCAAGACAGTGAGTTTTTCAATTTTTTCAATTCCTTCAACTTACAGTACGGGACAATGAGAAATACACAAACGTATTTTCCCCTCAATTTTTGCTTTTTCATCAATTTTAACTTTTTCGCCAATTTTAACTTTTTCAAAGTGACCGGAAGCTTGACAGCCATCTCTAGAATTCAGAGAATGGTCAWAATTTCCAAAATCGATTGAAAAAAAAAATTTTTTTTGAAAAAATTAAAAAAAAAGTTTTCGTATTTATTATAGACCGGTACTGTGAGCCTAAAATTCCAGAGCGCCCAGATATGTTTGTGAACACACCGATCAACAAGCAACCAGACATCATGTTGAAATTCATGGAACTTTTCAACTGGAAATTGATCCCATTCCACAAGTTCTACATTTACATTCGTGAGGATATTACCACTATTCAGTTGTGGAATAAAGCTGTGTTTGTGGAGTTCCCAATTGGAACAAATGATCTCAGTGGGATCTTGAAGCAATTGACCCCATTCATTGCATGTCTTTATGAAGCAAGAGTGTTCAGTATTGGTGTGAAGATCTTCGGTAAAATGAAATTCTAAATTCGACTTCTAAATTGTTTTTTGTTGCAGGAAGCGCAAAGGAATTGATGAAAAGATTTAAAAACTATCTCAACAAAGACAAAAAATTTGAACGTGATCCTGTCAAATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>482 225 85 66 65 26 26 18 7</canonical_bands>
                <polymorphic_bands>482 225 85 66 65 44 26 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAAGACAGTGAGTTTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>CCGGTCTATAATAAATACGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>GCAAGACAGTGAGTTTTTCAATTTTTTCAATTCCTTCAACTTACAGTACGGGACAATGAGAAATACACAAACGTATTTTCCCCTCAATTTTTGCTTTTTCATCAATTTTAACTTTTTCGCCAATTTTAACTTTTTCAAAGTGACCGGAAGCTTGACAGCCATCTCTAGAATTCAGAGAATGGTCAAAATTTCCAAAATCGATTGAAAAAAAAAATTTTTTTTGAAAAAATTAAAAAAAAAGTTTTCGTATTTATTATAGACCGG</canonical_amplicon>
		<polymorphic_amplicon>GCAAGACAGTGAGTTTTTCAATTTTTTCAATTCCTTCAACTTACAGTACGGGACAATGAGAAATACACAAACGTATTTTCCCCTCAATTTTTGCTTTTTCATCAATTTTAACTTTTTCGCCAATTTTAACTTTTTCAAAGTGACCGGAAGCTTGACAGCCATCTCTAGAATTCAGAGAATGGTCAWAATTTCCAAAATCGATTGAAAAAAAAAATTTTTTTTGAAAAAATTAAAAAAAAAGTTTTCGTATTTATTATAGACCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33212</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>378521</contig_pos>
        <strand></strand>
        <context>tgaaaaaatt[A/T]aaaaaaaaGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCAAAATTTCCAAAATCGATTGAAAAAAAAAATTTTTTTTGAAAAAATT</left_flank>
        <right_flank>AAAAAAAAGTTTTCGTATTTATTATAGACCGGTACTGTGAGCCTAAAATT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTTTCAAAAAGAAGCGGAGAATCCCTTGATGTGGTAGTTGTTCAAACCAAACGGAAAAGGTTTCGACGAATGAAGAGAGAACCTGCATGGCCATTTTTTCTAACAATGCTCCACGCGTTCCCCAACGATGATATATCCAAATATGCAGTTTATTTCAATTCAATCAATAATTGGGCGGTGCAATACCCATACCCAGTTTGGGTTGAGACCTTTCGTTGGATAAATATACGCCTTGAGGATCGGAAAAATGAGATTGAACGCTACTTGCAAGACAGTGAGTTTTTCAATTTTTTCAATTCCTTCAACTTACAGTACGGGACAATGAGAAATACACAAACGTATTTTCCCCTCAATTTTTGCTTTTTCATCAATTTTAACTTTTTCGCCAATTTTAACTTTTTCAAAGTGACCGGAAGCTTGACAGCCATCTCTAGAATTCAGAGAATGGTCAAAATTTCCAAAATCGATTGAAAAAAAAAATTTTTTTTGAAAAAATTAAAAAAAAAGTTTTCGTATTTATTATAGACCGGTACTGTGAGCCTAAAATTCCAGAGCGCCCAGATATGTTTGTGAACACACCGATCAACAAGCAACCAGACATCATGTTGAAATTCATGGAACTTTTCAACTGGAAATTGATCCCATTCCACAAGTTCTACATTTACATTCGTGAGGATATTACCACTATTCAGTTGTGGAATAAAGCTGTGTTTGTGGAGTTCCCAATTGGAACAAATGATCTCAGTGGGATCTTGAAGCAATTGACCCCATTCATTGCATGTCTTTATGAAGCAAGAGTGTTCAGTATTGGTGTGAAGATCTTCGGTAAAATGAAATTCTAAATTCGACTTCTAAATTGTTTTTTGTTGCAGGAAGCGCAAAGGAATTGATGAAAAGATTTAAAAACTATCTCAACAAAGACAAAAAATTTGAACGTGATCCTGTCAAATATGCATGTAGTGATATTCGATACAATTTCGATGAAATCGGAAGAGAGA</canonical>
            <polymorphic>CGTTTTCAAAAAGAAGCGGAGAATCCCTTGATGTGGTAGTTGTTCAAACCAAACGGAAAAGGTTTCGACGAATGAAGAGAGAACCTGCATGGCCATTTTTTCTAACAATGCTCCACGCGTTCCCCAACGATGATATATCCAAATATGCAGTTTATTTCAATTCAATCAATAATTGGGCGGTGCAATACCCATACCCAGTTTGGGTTGAGACCTTTCGTTGGATAAATATACGCCTTGAGGATCGGAAAAATGAGATTGAACGCTACTTGCAAGACAGTGAGTTTTTCAATTTTTTCAATTCCTTCAACTTACAGTACGGGACAATGAGAAATACACAAACGTATTTTCCCCTCAATTTTTGCTTTTTCATCAATTTTAACTTTTTCGCCAATTTTAACTTTTTCAAAGTGACCGGAAGCTTGACAGCCATCTCTAGAATTCAGAGAATGGTCAAAATTTCCAAAATCGATTGAAAAAAAAAATTTTTTTTGAAAAAATTWAAAAAAAAGTTTTCGTATTTATTATAGACCGGTACTGTGAGCCTAAAATTCCAGAGCGCCCAGATATGTTTGTGAACACACCGATCAACAAGCAACCAGACATCATGTTGAAATTCATGGAACTTTTCAACTGGAAATTGATCCCATTCCACAAGTTCTACATTTACATTCGTGAGGATATTACCACTATTCAGTTGTGGAATAAAGCTGTGTTTGTGGAGTTCCCAATTGGAACAAATGATCTCAGTGGGATCTTGAAGCAATTGACCCCATTCATTGCATGTCTTTATGAAGCAAGAGTGTTCAGTATTGGTGTGAAGATCTTCGGTAAAATGAAATTCTAAATTCGACTTCTAAATTGTTTTTTGTTGCAGGAAGCGCAAAGGAATTGATGAAAAGATTTAAAAACTATCTCAACAAAGACAAAAAATTTGAACGTGATCCTGTCAAATATGCATGTAGTGATATTCGATACAATTTCGATGAAATCGGAAGAGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>404 376 104 98 18</canonical_bands>
                <polymorphic_bands>508 376 98 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGACAGTGAGTTTTTCAATTT</pcr_primer_p1>
		<pcr_primer_p2>TGGAATTTTAGGCTCACAGTA</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>CAAGACAGTGAGTTTTTCAATTTTTTCAATTCCTTCAACTTACAGTACGGGACAATGAGAAATACACAAACGTATTTTCCCCTCAATTTTTGCTTTTTCATCAATTTTAACTTTTTCGCCAATTTTAACTTTTTCAAAGTGACCGGAAGCTTGACAGCCATCTCTAGAATTCAGAGAATGGTCAAAATTTCCAAAATCGATTGAAAAAAAAAATTTTTTTTGAAAAAATTAAAAAAAAAGTTTTCGTATTTATTATAGACCGGTACTGTGAGCCTAAAATTCCA</canonical_amplicon>
		<polymorphic_amplicon>CAAGACAGTGAGTTTTTCAATTTTTTCAATTCCTTCAACTTACAGTACGGGACAATGAGAAATACACAAACGTATTTTCCCCTCAATTTTTGCTTTTTCATCAATTTTAACTTTTTCGCCAATTTTAACTTTTTCAAAGTGACCGGAAGCTTGACAGCCATCTCTAGAATTCAGAGAATGGTCAAAATTTCCAAAATCGATTGAAAAAAAAAATTTTTTTTGAAAAAATTWAAAAAAAAGTTTTCGTATTTATTATAGACCGGTACTGTGAGCCTAAAATTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33213</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>378671</contig_pos>
        <strand>+</strand>
        <context>GATCCCATTC[A/C]ACAAGTTCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACATCATGTTGAAATTCATGGAACTTTTCAACTGGAAATTGATCCCATTC</left_flank>
        <right_flank>ACAAGTTCTACATTTACATTCGTGAGGATATTACCACTATTCAGTTGTGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTATTTCAATTCAATCAATAATTGGGCGGTGCAATACCCATACCCAGTTTGGGTTGAGACCTTTCGTTGGATAAATATACGCCTTGAGGATCGGAAAAATGAGATTGAACGCTACTTGCAAGACAGTGAGTTTTTCAATTTTTTCAATTCCTTCAACTTACAGTACGGGACAATGAGAAATACACAAACGTATTTTCCCCTCAATTTTTGCTTTTTCATCAATTTTAACTTTTTCGCCAATTTTAACTTTTTCAAAGTGACCGGAAGCTTGACAGCCATCTCTAGAATTCAGAGAATGGTCAAAATTTCCAAAATCGATTGAAAAAAAAAATTTTTTTTGAAAAAATTAAAAAAAAAGTTTTCGTATTTATTATAGACCGGTACTGTGAGCCTAAAATTCCAGAGCGCCCAGATATGTTTGTGAACACACCGATCAACAAGCAACCAGACATCATGTTGAAATTCATGGAACTTTTCAACTGGAAATTGATCCCATTCCACAAGTTCTACATTTACATTCGTGAGGATATTACCACTATTCAGTTGTGGAATAAAGCTGTGTTTGTGGAGTTCCCAATTGGAACAAATGATCTCAGTGGGATCTTGAAGCAATTGACCCCATTCATTGCATGTCTTTATGAAGCAAGAGTGTTCAGTATTGGTGTGAAGATCTTCGGTAAAATGAAATTCTAAATTCGACTTCTAAATTGTTTTTTGTTGCAGGAAGCGCAAAGGAATTGATGAAAAGATTTAAAAACTATCTCAACAAAGACAAAAAATTTGAACGTGATCCTGTCAAATATGCATGTAGTGATATTCGATACAATTTCGATGAAATCGGAAGAGAGAAGTTCTACGAGACTCGTGATTTCAAGAGAGCTGAGAAGGGGCAGGACAAGGATACTGATAAATGGATTTTCTATAAGCGTGCCATCGATGATGAGGATTTTGGAGTTCCAATTGTTCTTGATTAAGATTTTTGTCACAAGTTTTCTGCTA</canonical>
            <polymorphic>TTTATTTCAATTCAATCAATAATTGGGCGGTGCAATACCCATACCCAGTTTGGGTTGAGACCTTTCGTTGGATAAATATACGCCTTGAGGATCGGAAAAATGAGATTGAACGCTACTTGCAAGACAGTGAGTTTTTCAATTTTTTCAATTCCTTCAACTTACAGTACGGGACAATGAGAAATACACAAACGTATTTTCCCCTCAATTTTTGCTTTTTCATCAATTTTAACTTTTTCGCCAATTTTAACTTTTTCAAAGTGACCGGAAGCTTGACAGCCATCTCTAGAATTCAGAGAATGGTCAAAATTTCCAAAATCGATTGAAAAAAAAAATTTTTTTTGAAAAAATTAAAAAAAAAGTTTTCGTATTTATTATAGACCGGTACTGTGAGCCTAAAATTCCAGAGCGCCCAGATATGTTTGTGAACACACCGATCAACAAGCAACCAGACATCATGTTGAAATTCATGGAACTTTTCAACTGGAAATTGATCCCATTCMACAAGTTCTACATTTACATTCGTGAGGATATTACCACTATTCAGTTGTGGAATAAAGCTGTGTTTGTGGAGTTCCCAATTGGAACAAATGATCTCAGTGGGATCTTGAAGCAATTGACCCCATTCATTGCATGTCTTTATGAAGCAAGAGTGTTCAGTATTGGTGTGAAGATCTTCGGTAAAATGAAATTCTAAATTCGACTTCTAAATTGTTTTTTGTTGCAGGAAGCGCAAAGGAATTGATGAAAAGATTTAAAAACTATCTCAACAAAGACAAAAAATTTGAACGTGATCCTGTCAAATATGCATGTAGTGATATTCGATACAATTTCGATGAAATCGGAAGAGAGAAGTTCTACGAGACTCGTGATTTCAAGAGAGCTGAGAAGGGGCAGGACAAGGATACTGATAAATGGATTTTCTATAAGCGTGCCATCGATGATGAGGATTTTGGAGTTCCAATTGTTCTTGATTAAGATTTTTGTCACAAGTTTTCTGCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>129 123 97 75 71 63 56 55 54 53 35 32 31 24 23 14 13 13 13 12 6 4 2 2</canonical_bands>
                <polymorphic_bands>129 123 97 94 75 63 56 55 54 53 35 32 31 24 14 13 13 13 12 6 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACCAGACATCATGTTGAA</pcr_primer_p1>
		<pcr_primer_p2>TTAGAATTTCATTTTACCGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAACCAGACATCATGTTGAAATTCATGGAACTTTTCAACTGGAAATTGATCCCATTCCACAAGTTCTACATTTACATTCGTGAGGATATTACCACTATTCAGTTGTGGAATAAAGCTGTGTTTGTGGAGTTCCCAATTGGAACAAATGATCTCAGTGGGATCTTGAAGCAATTGACCCCATTCATTGCATGTCTTTATGAAGCAAGAGTGTTCAGTATTGGTGTGAAGATCTTCGGTAAAATGAAATTCTAA</canonical_amplicon>
		<polymorphic_amplicon>CAACCAGACATCATGTTGAAATTCATGGAACTTTTCAACTGGAAATTGATCCCATTCMACAAGTTCTACATTTACATTCGTGAGGATATTACCACTATTCAGTTGTGGAATAAAGCTGTGTTTGTGGAGTTCCCAATTGGAACAAATGATCTCAGTGGGATCTTGAAGCAATTGACCCCATTCATTGCATGTCTTTATGAAGCAAGAGTGTTCAGTATTGGTGTGAAGATCTTCGGTAAAATGAAATTCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33214</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>378757</contig_pos>
        <strand>+</strand>
        <context>CAATTGGAAC[A/G]AATGATYTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTATTCAGTTGTGGAATAAAGCTGTGTTTGTGGAGTTCCCAATTGGAAC</left_flank>
        <right_flank>AATGATCTCAGTGGGATCTTGAAGCAATTGACCCCATTCATTGCATGTCT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGATCGGAAAAATGAGATTGAACGCTACTTGCAAGACAGTGAGTTTTTCAATTTTTTCAATTCCTTCAACTTACAGTACGGGACAATGAGAAATACACAAACGTATTTTCCCCTCAATTTTTGCTTTTTCATCAATTTTAACTTTTTCGCCAATTTTAACTTTTTCAAAGTGACCGGAAGCTTGACAGCCATCTCTAGAATTCAGAGAATGGTCAAAATTTCCAAAATCGATTGAAAAAAAAAATTTTTTTTGAAAAAATTAAAAAAAAAGTTTTCGTATTTATTATAGACCGGTACTGTGAGCCTAAAATTCCAGAGCGCCCAGATATGTTTGTGAACACACCGATCAACAAGCAACCAGACATCATGTTGAAATTCATGGAACTTTTCAACTGGAAATTGATCCCATTCCACAAGTTCTACATTTACATTCGTGAGGATATTACCACTATTCAGTTGTGGAATAAAGCTGTGTTTGTGGAGTTCCCAATTGGAACAAATGATCTCAGTGGGATCTTGAAGCAATTGACCCCATTCATTGCATGTCTTTATGAAGCAAGAGTGTTCAGTATTGGTGTGAAGATCTTCGGTAAAATGAAATTCTAAATTCGACTTCTAAATTGTTTTTTGTTGCAGGAAGCGCAAAGGAATTGATGAAAAGATTTAAAAACTATCTCAACAAAGACAAAAAATTTGAACGTGATCCTGTCAAATATGCATGTAGTGATATTCGATACAATTTCGATGAAATCGGAAGAGAGAAGTTCTACGAGACTCGTGATTTCAAGAGAGCTGAGAAGGGGCAGGACAAGGATACTGATAAATGGATTTTCTATAAGCGTGCCATCGATGATGAGGATTTTGGAGTTCCAATTGTTCTTGATTAAGATTTTTGTCACAAGTTTTCTGCTATAGTTATAAATCTCCAATTCTTCATCTCAATTTTTTTTTGAGTTTTCCCTGTAGTCCTTTCTAATGGGATGCTTTTCAATGTAACG</canonical>
            <polymorphic>GAGGATCGGAAAAATGAGATTGAACGCTACTTGCAAGACAGTGAGTTTTTCAATTTTTTCAATTCCTTCAACTTACAGTACGGGACAATGAGAAATACACAAACGTATTTTCCCCTCAATTTTTGCTTTTTCATCAATTTTAACTTTTTCGCCAATTTTAACTTTTTCAAAGTGACCGGAAGCTTGACAGCCATCTCTAGAATTCAGAGAATGGTCAAAATTTCCAAAATCGATTGAAAAAAAAAATTTTTTTTGAAAAAATTAAAAAAAAAGTTTTCGTATTTATTATAGACCGGTACTGTGAGCCTAAAATTCCAGAGCGCCCAGATATGTTTGTGAACACACCGATCAACAAGCAACCAGACATCATGTTGAAATTCATGGAACTTTTCAACTGGAAATTGATCCCATTCCACAAGTTCTACATTTACATTCGTGAGGATATTACCACTATTCAGTTGTGGAATAAAGCTGTGTTTGTGGAGTTCCCAATTGGAACRAATGATCTCAGTGGGATCTTGAAGCAATTGACCCCATTCATTGCATGTCTTTATGAAGCAAGAGTGTTCAGTATTGGTGTGAAGATCTTCGGTAAAATGAAATTCTAAATTCGACTTCTAAATTGTTTTTTGTTGCAGGAAGCGCAAAGGAATTGATGAAAAGATTTAAAAACTATCTCAACAAAGACAAAAAATTTGAACGTGATCCTGTCAAATATGCATGTAGTGATATTCGATACAATTTCGATGAAATCGGAAGAGAGAAGTTCTACGAGACTCGTGATTTCAAGAGAGCTGAGAAGGGGCAGGACAAGGATACTGATAAATGGATTTTCTATAAGCGTGCCATCGATGATGAGGATTTTGGAGTTCCAATTGTTCTTGATTAAGATTTTTGTCACAAGTTTTCTGCTATAGTTATAAATCTCCAATTCTTCATCTCAATTTTTTTTTGAGTTTTCCCTGTAGTCCTTTCTAATGGGATGCTTTTCAATGTAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCACTATTCAGTTGTGGAATAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGTCTTTGTTGAGATAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACCACTATTCAGTTGTGGAATAAAGCTGTGTTTGTGGAGTTCCCAATTGGAACAAATGATCTCAGTGGGATCTTGAAGCAATTGACCCCATTCATTGCATGTCTTTATGAAGCAAGAGTGTTCAGTATTGGTGTGAAGATCTTCGGTAAAATGAAATTCTAAATTCGACTTCTAAATTGTTTTTTGTTGCAGGAAGCGCAAAGGAATTGATGAAAAGATTTAAAAACTATCTCAACAAAGACAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACCACTATTCAGTTGTGGAATAAAGCTGTGTTTGTGGAGTTCCCAATTGGAACRAATGATCTCAGTGGGATCTTGAAGCAATTGACCCCATTCATTGCATGTCTTTATGAAGCAAGAGTGTTCAGTATTGGTGTGAAGATCTTCGGTAAAATGAAATTCTAAATTCGACTTCTAAATTGTTTTTTGTTGCAGGAAGCGCAAAGGAATTGATGAAAAGATTTAAAAACTATCTCAACAAAGACAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33215</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>378764</contig_pos>
        <strand>+</strand>
        <context>AACRAATGAT[C/T]TCAGTGGGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTTGTGGAATAAAGCTGTGTTTGTGGAGTTCCCAATTGGAACAAATGAT</left_flank>
        <right_flank>TCAGTGGGATCTTGAAGCAATTGACCCCATTCATTGCATGTCTTTATGAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAAAAATGAGATTGAACGCTACTTGCAAGACAGTGAGTTTTTCAATTTTTTCAATTCCTTCAACTTACAGTACGGGACAATGAGAAATACACAAACGTATTTTCCCCTCAATTTTTGCTTTTTCATCAATTTTAACTTTTTCGCCAATTTTAACTTTTTCAAAGTGACCGGAAGCTTGACAGCCATCTCTAGAATTCAGAGAATGGTCAAAATTTCCAAAATCGATTGAAAAAAAAAATTTTTTTTGAAAAAATTAAAAAAAAAGTTTTCGTATTTATTATAGACCGGTACTGTGAGCCTAAAATTCCAGAGCGCCCAGATATGTTTGTGAACACACCGATCAACAAGCAACCAGACATCATGTTGAAATTCATGGAACTTTTCAACTGGAAATTGATCCCATTCCACAAGTTCTACATTTACATTCGTGAGGATATTACCACTATTCAGTTGTGGAATAAAGCTGTGTTTGTGGAGTTCCCAATTGGAACAAATGATCTCAGTGGGATCTTGAAGCAATTGACCCCATTCATTGCATGTCTTTATGAAGCAAGAGTGTTCAGTATTGGTGTGAAGATCTTCGGTAAAATGAAATTCTAAATTCGACTTCTAAATTGTTTTTTGTTGCAGGAAGCGCAAAGGAATTGATGAAAAGATTTAAAAACTATCTCAACAAAGACAAAAAATTTGAACGTGATCCTGTCAAATATGCATGTAGTGATATTCGATACAATTTCGATGAAATCGGAAGAGAGAAGTTCTACGAGACTCGTGATTTCAAGAGAGCTGAGAAGGGGCAGGACAAGGATACTGATAAATGGATTTTCTATAAGCGTGCCATCGATGATGAGGATTTTGGAGTTCCAATTGTTCTTGATTAAGATTTTTGTCACAAGTTTTCTGCTATAGTTATAAATCTCCAATTCTTCATCTCAATTTTTTTTTGAGTTTTCCCTGTAGTCCTTTCTAATGGGATGCTTTTCAATGTAACGTGAATCC</canonical>
            <polymorphic>GGAAAAATGAGATTGAACGCTACTTGCAAGACAGTGAGTTTTTCAATTTTTTCAATTCCTTCAACTTACAGTACGGGACAATGAGAAATACACAAACGTATTTTCCCCTCAATTTTTGCTTTTTCATCAATTTTAACTTTTTCGCCAATTTTAACTTTTTCAAAGTGACCGGAAGCTTGACAGCCATCTCTAGAATTCAGAGAATGGTCAAAATTTCCAAAATCGATTGAAAAAAAAAATTTTTTTTGAAAAAATTAAAAAAAAAGTTTTCGTATTTATTATAGACCGGTACTGTGAGCCTAAAATTCCAGAGCGCCCAGATATGTTTGTGAACACACCGATCAACAAGCAACCAGACATCATGTTGAAATTCATGGAACTTTTCAACTGGAAATTGATCCCATTCCACAAGTTCTACATTTACATTCGTGAGGATATTACCACTATTCAGTTGTGGAATAAAGCTGTGTTTGTGGAGTTCCCAATTGGAACAAATGATYTCAGTGGGATCTTGAAGCAATTGACCCCATTCATTGCATGTCTTTATGAAGCAAGAGTGTTCAGTATTGGTGTGAAGATCTTCGGTAAAATGAAATTCTAAATTCGACTTCTAAATTGTTTTTTGTTGCAGGAAGCGCAAAGGAATTGATGAAAAGATTTAAAAACTATCTCAACAAAGACAAAAAATTTGAACGTGATCCTGTCAAATATGCATGTAGTGATATTCGATACAATTTCGATGAAATCGGAAGAGAGAAGTTCTACGAGACTCGTGATTTCAAGAGAGCTGAGAAGGGGCAGGACAAGGATACTGATAAATGGATTTTCTATAAGCGTGCCATCGATGATGAGGATTTTGGAGTTCCAATTGTTCTTGATTAAGATTTTTGTCACAAGTTTTCTGCTATAGTTATAAATCTCCAATTCTTCATCTCAATTTTTTTTTGAGTTTTCCCTGTAGTCCTTTCTAATGGGATGCTTTTCAATGTAACGTGAATCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>339 304 120 100 69 57 11</canonical_bands>
                <polymorphic_bands>339 304 120 111 69 57</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 288 212</canonical_bands>
                <polymorphic_bands>788 212</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCACTATTCAGTTGTGGAATAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGTCTTTGTTGAGATAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACCACTATTCAGTTGTGGAATAAAGCTGTGTTTGTGGAGTTCCCAATTGGAACAAATGATCTCAGTGGGATCTTGAAGCAATTGACCCCATTCATTGCATGTCTTTATGAAGCAAGAGTGTTCAGTATTGGTGTGAAGATCTTCGGTAAAATGAAATTCTAAATTCGACTTCTAAATTGTTTTTTGTTGCAGGAAGCGCAAAGGAATTGATGAAAAGATTTAAAAACTATCTCAACAAAGACAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACCACTATTCAGTTGTGGAATAAAGCTGTGTTTGTGGAGTTCCCAATTGGAACAAATGATYTCAGTGGGATCTTGAAGCAATTGACCCCATTCATTGCATGTCTTTATGAAGCAAGAGTGTTCAGTATTGGTGTGAAGATCTTCGGTAAAATGAAATTCTAAATTCGACTTCTAAATTGTTTTTTGTTGCAGGAAGCGCAAAGGAATTGATGAAAAGATTTAAAAACTATCTCAACAAAGACAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33216</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>378899</contig_pos>
        <strand>+</strand>
        <context>GTTGCAGGAA[A/G]CGCAAAGGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAAAATGAAATTCTAAATTCGACTTCTAAATTGTTTTTTGTTGCAGGAA</left_flank>
        <right_flank>CGCAAAGGAATTGATGAAAAGATTTAAAAACTATCTCAACAAAGACAAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTTTTCGCCAATTTTAACTTTTTCAAAGTGACCGGAAGCTTGACAGCCATCTCTAGAATTCAGAGAATGGTCAAAATTTCCAAAATCGATTGAAAAAAAAAATTTTTTTTGAAAAAATTAAAAAAAAAGTTTTCGTATTTATTATAGACCGGTACTGTGAGCCTAAAATTCCAGAGCGCCCAGATATGTTTGTGAACACACCGATCAACAAGCAACCAGACATCATGTTGAAATTCATGGAACTTTTCAACTGGAAATTGATCCCATTCCACAAGTTCTACATTTACATTCGTGAGGATATTACCACTATTCAGTTGTGGAATAAAGCTGTGTTTGTGGAGTTCCCAATTGGAACAAATGATCTCAGTGGGATCTTGAAGCAATTGACCCCATTCATTGCATGTCTTTATGAAGCAAGAGTGTTCAGTATTGGTGTGAAGATCTTCGGTAAAATGAAATTCTAAATTCGACTTCTAAATTGTTTTTTGTTGCAGGAAGCGCAAAGGAATTGATGAAAAGATTTAAAAACTATCTCAACAAAGACAAAAAATTTGAACGTGATCCTGTCAAATATGCATGTAGTGATATTCGATACAATTTCGATGAAATCGGAAGAGAGAAGTTCTACGAGACTCGTGATTTCAAGAGAGCTGAGAAGGGGCAGGACAAGGATACTGATAAATGGATTTTCTATAAGCGTGCCATCGATGATGAGGATTTTGGAGTTCCAATTGTTCTTGATTAAGATTTTTGTCACAAGTTTTCTGCTATAGTTATAAATCTCCAATTCTTCATCTCAATTTTTTTTTGAGTTTTCCCTGTAGTCCTTTCTAATGGGATGCTTTTCAATGTAACGTGAATCCTCTGATAGAAGACCCAGAAAACTGTCAAATTTAAGCTCAATTATTTCAATTGCTGTGAAAGACATAAAAAACTGTCAACTGACAAAATGTTAACTATAAAATTTCAAAAATTTTTCAGTTGACCATTTTTTGATG</canonical>
            <polymorphic>ACTTTTTCGCCAATTTTAACTTTTTCAAAGTGACCGGAAGCTTGACAGCCATCTCTAGAATTCAGAGAATGGTCAAAATTTCCAAAATCGATTGAAAAAAAAAATTTTTTTTGAAAAAATTAAAAAAAAAGTTTTCGTATTTATTATAGACCGGTACTGTGAGCCTAAAATTCCAGAGCGCCCAGATATGTTTGTGAACACACCGATCAACAAGCAACCAGACATCATGTTGAAATTCATGGAACTTTTCAACTGGAAATTGATCCCATTCCACAAGTTCTACATTTACATTCGTGAGGATATTACCACTATTCAGTTGTGGAATAAAGCTGTGTTTGTGGAGTTCCCAATTGGAACAAATGATCTCAGTGGGATCTTGAAGCAATTGACCCCATTCATTGCATGTCTTTATGAAGCAAGAGTGTTCAGTATTGGTGTGAAGATCTTCGGTAAAATGAAATTCTAAATTCGACTTCTAAATTGTTTTTTGTTGCAGGAARCGCAAAGGAATTGATGAAAAGATTTAAAAACTATCTCAACAAAGACAAAAAATTTGAACGTGATCCTGTCAAATATGCATGTAGTGATATTCGATACAATTTCGATGAAATCGGAAGAGAGAAGTTCTACGAGACTCGTGATTTCAAGAGAGCTGAGAAGGGGCAGGACAAGGATACTGATAAATGGATTTTCTATAAGCGTGCCATCGATGATGAGGATTTTGGAGTTCCAATTGTTCTTGATTAAGATTTTTGTCACAAGTTTTCTGCTATAGTTATAAATCTCCAATTCTTCATCTCAATTTTTTTTTGAGTTTTCCCTGTAGTCCTTTCTAATGGGATGCTTTTCAATGTAACGTGAATCCTCTGATAGAAGACCCAGAAAACTGTCAAATTTAAGCTCAATTATTTCAATTGCTGTGAAAGACATAAAAAACTGTCAACTGACAAAATGTTAACTATAAAATTTCAAAAATTTTTCAGTTGACCATTTTTTGATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>498 322 180</canonical_bands>
                <polymorphic_bands>820 180</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCTTCGGTAAAATGAAATTCT</pcr_primer_p1>
		<pcr_primer_p2>AAATCCATTTATCAGTATCCTTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCTTCGGTAAAATGAAATTCTAAATTCGACTTCTAAATTGTTTTTTGTTGCAGGAAGCGCAAAGGAATTGATGAAAAGATTTAAAAACTATCTCAACAAAGACAAAAAATTTGAACGTGATCCTGTCAAATATGCATGTAGTGATATTCGATACAATTTCGATGAAATCGGAAGAGAGAAGTTCTACGAGACTCGTGATTTCAAGAGAGCTGAGAAGGGGCAGGACAAGGATACTGATAAATGGATTT</canonical_amplicon>
		<polymorphic_amplicon>GATCTTCGGTAAAATGAAATTCTAAATTCGACTTCTAAATTGTTTTTTGTTGCAGGAARCGCAAAGGAATTGATGAAAAGATTTAAAAACTATCTCAACAAAGACAAAAAATTTGAACGTGATCCTGTCAAATATGCATGTAGTGATATTCGATACAATTTCGATGAAATCGGAAGAGAGAAGTTCTACGAGACTCGTGATTTCAAGAGAGCTGAGAAGGGGCAGGACAAGGATACTGATAAATGGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33217</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>378921</contig_pos>
        <strand>+</strand>
        <context>TGATGAAAAG[A/G]TTTRAAAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTTCTAAATTGTTTTTTGTTGCAGGAAGCGCAAAGGAATTGATGAAAAG</left_flank>
        <right_flank>TTTAAAAACTATCTCAACAAAGACAAAAAATTTGAACGTGATCCTGTCAA</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAAAGTGACCGGAAGCTTGACAGCCATCTCTAGAATTCAGAGAATGGTCAAAATTTCCAAAATCGATTGAAAAAAAAAATTTTTTTTGAAAAAATTAAAAAAAAAGTTTTCGTATTTATTATAGACCGGTACTGTGAGCCTAAAATTCCAGAGCGCCCAGATATGTTTGTGAACACACCGATCAACAAGCAACCAGACATCATGTTGAAATTCATGGAACTTTTCAACTGGAAATTGATCCCATTCCACAAGTTCTACATTTACATTCGTGAGGATATTACCACTATTCAGTTGTGGAATAAAGCTGTGTTTGTGGAGTTCCCAATTGGAACAAATGATCTCAGTGGGATCTTGAAGCAATTGACCCCATTCATTGCATGTCTTTATGAAGCAAGAGTGTTCAGTATTGGTGTGAAGATCTTCGGTAAAATGAAATTCTAAATTCGACTTCTAAATTGTTTTTTGTTGCAGGAAGCGCAAAGGAATTGATGAAAAGATTTAAAAACTATCTCAACAAAGACAAAAAATTTGAACGTGATCCTGTCAAATATGCATGTAGTGATATTCGATACAATTTCGATGAAATCGGAAGAGAGAAGTTCTACGAGACTCGTGATTTCAAGAGAGCTGAGAAGGGGCAGGACAAGGATACTGATAAATGGATTTTCTATAAGCGTGCCATCGATGATGAGGATTTTGGAGTTCCAATTGTTCTTGATTAAGATTTTTGTCACAAGTTTTCTGCTATAGTTATAAATCTCCAATTCTTCATCTCAATTTTTTTTTGAGTTTTCCCTGTAGTCCTTTCTAATGGGATGCTTTTCAATGTAACGTGAATCCTCTGATAGAAGACCCAGAAAACTGTCAAATTTAAGCTCAATTATTTCAATTGCTGTGAAAGACATAAAAAACTGTCAACTGACAAAATGTTAACTATAAAATTTCAAAAATTTTTCAGTTGACCATTTTTTGATGTCTTTTACAGGAATTGAGATAA</canonical>
            <polymorphic>TTTCAAAGTGACCGGAAGCTTGACAGCCATCTCTAGAATTCAGAGAATGGTCAAAATTTCCAAAATCGATTGAAAAAAAAAATTTTTTTTGAAAAAATTAAAAAAAAAGTTTTCGTATTTATTATAGACCGGTACTGTGAGCCTAAAATTCCAGAGCGCCCAGATATGTTTGTGAACACACCGATCAACAAGCAACCAGACATCATGTTGAAATTCATGGAACTTTTCAACTGGAAATTGATCCCATTCCACAAGTTCTACATTTACATTCGTGAGGATATTACCACTATTCAGTTGTGGAATAAAGCTGTGTTTGTGGAGTTCCCAATTGGAACAAATGATCTCAGTGGGATCTTGAAGCAATTGACCCCATTCATTGCATGTCTTTATGAAGCAAGAGTGTTCAGTATTGGTGTGAAGATCTTCGGTAAAATGAAATTCTAAATTCGACTTCTAAATTGTTTTTTGTTGCAGGAAGCGCAAAGGAATTGATGAAAAGRTTTAAAAACTATCTCAACAAAGACAAAAAATTTGAACGTGATCCTGTCAAATATGCATGTAGTGATATTCGATACAATTTCGATGAAATCGGAAGAGAGAAGTTCTACGAGACTCGTGATTTCAAGAGAGCTGAGAAGGGGCAGGACAAGGATACTGATAAATGGATTTTCTATAAGCGTGCCATCGATGATGAGGATTTTGGAGTTCCAATTGTTCTTGATTAAGATTTTTGTCACAAGTTTTCTGCTATAGTTATAAATCTCCAATTCTTCATCTCAATTTTTTTTTGAGTTTTCCCTGTAGTCCTTTCTAATGGGATGCTTTTCAATGTAACGTGAATCCTCTGATAGAAGACCCAGAAAACTGTCAAATTTAAGCTCAATTATTTCAATTGCTGTGAAAGACATAAAAAACTGTCAACTGACAAAATGTTAACTATAAAATTTCAAAAATTTTTCAGTTGACCATTTTTTGATGTCTTTTACAGGAATTGAGATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCTTCGGTAAAATGAAATTCT</pcr_primer_p1>
		<pcr_primer_p2>AAATCCATTTATCAGTATCCTTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCTTCGGTAAAATGAAATTCTAAATTCGACTTCTAAATTGTTTTTTGTTGCAGGAAGCGCAAAGGAATTGATGAAAAGATTTAAAAACTATCTCAACAAAGACAAAAAATTTGAACGTGATCCTGTCAAATATGCATGTAGTGATATTCGATACAATTTCGATGAAATCGGAAGAGAGAAGTTCTACGAGACTCGTGATTTCAAGAGAGCTGAGAAGGGGCAGGACAAGGATACTGATAAATGGATTT</canonical_amplicon>
		<polymorphic_amplicon>GATCTTCGGTAAAATGAAATTCTAAATTCGACTTCTAAATTGTTTTTTGTTGCAGGAAGCGCAAAGGAATTGATGAAAAGRTTTAAAAACTATCTCAACAAAGACAAAAAATTTGAACGTGATCCTGTCAAATATGCATGTAGTGATATTCGATACAATTTCGATGAAATCGGAAGAGAGAAGTTCTACGAGACTCGTGATTTCAAGAGAGCTGAGAAGGGGCAGGACAAGGATACTGATAAATGGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33218</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>378925</contig_pos>
        <strand>+</strand>
        <context>GAAAAGRTTT[A/G]AAAACTATCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAAATTGTTTTTTGTTGCAGGAAGCGCAAAGGAATTGATGAAAAGATTT</left_flank>
        <right_flank>AAAACTATCTCAACAAAGACAAAAAATTTGAACGTGATCCTGTCAAATAT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGTGACCGGAAGCTTGACAGCCATCTCTAGAATTCAGAGAATGGTCAAAATTTCCAAAATCGATTGAAAAAAAAAATTTTTTTTGAAAAAATTAAAAAAAAAGTTTTCGTATTTATTATAGACCGGTACTGTGAGCCTAAAATTCCAGAGCGCCCAGATATGTTTGTGAACACACCGATCAACAAGCAACCAGACATCATGTTGAAATTCATGGAACTTTTCAACTGGAAATTGATCCCATTCCACAAGTTCTACATTTACATTCGTGAGGATATTACCACTATTCAGTTGTGGAATAAAGCTGTGTTTGTGGAGTTCCCAATTGGAACAAATGATCTCAGTGGGATCTTGAAGCAATTGACCCCATTCATTGCATGTCTTTATGAAGCAAGAGTGTTCAGTATTGGTGTGAAGATCTTCGGTAAAATGAAATTCTAAATTCGACTTCTAAATTGTTTTTTGTTGCAGGAAGCGCAAAGGAATTGATGAAAAGATTTAAAAACTATCTCAACAAAGACAAAAAATTTGAACGTGATCCTGTCAAATATGCATGTAGTGATATTCGATACAATTTCGATGAAATCGGAAGAGAGAAGTTCTACGAGACTCGTGATTTCAAGAGAGCTGAGAAGGGGCAGGACAAGGATACTGATAAATGGATTTTCTATAAGCGTGCCATCGATGATGAGGATTTTGGAGTTCCAATTGTTCTTGATTAAGATTTTTGTCACAAGTTTTCTGCTATAGTTATAAATCTCCAATTCTTCATCTCAATTTTTTTTTGAGTTTTCCCTGTAGTCCTTTCTAATGGGATGCTTTTCAATGTAACGTGAATCCTCTGATAGAAGACCCAGAAAACTGTCAAATTTAAGCTCAATTATTTCAATTGCTGTGAAAGACATAAAAAACTGTCAACTGACAAAATGTTAACTATAAAATTTCAAAAATTTTTCAGTTGACCATTTTTTGATGTCTTTTACAGGAATTGAGATAATTGA</canonical>
            <polymorphic>AAAGTGACCGGAAGCTTGACAGCCATCTCTAGAATTCAGAGAATGGTCAAAATTTCCAAAATCGATTGAAAAAAAAAATTTTTTTTGAAAAAATTAAAAAAAAAGTTTTCGTATTTATTATAGACCGGTACTGTGAGCCTAAAATTCCAGAGCGCCCAGATATGTTTGTGAACACACCGATCAACAAGCAACCAGACATCATGTTGAAATTCATGGAACTTTTCAACTGGAAATTGATCCCATTCCACAAGTTCTACATTTACATTCGTGAGGATATTACCACTATTCAGTTGTGGAATAAAGCTGTGTTTGTGGAGTTCCCAATTGGAACAAATGATCTCAGTGGGATCTTGAAGCAATTGACCCCATTCATTGCATGTCTTTATGAAGCAAGAGTGTTCAGTATTGGTGTGAAGATCTTCGGTAAAATGAAATTCTAAATTCGACTTCTAAATTGTTTTTTGTTGCAGGAAGCGCAAAGGAATTGATGAAAAGATTTRAAAACTATCTCAACAAAGACAAAAAATTTGAACGTGATCCTGTCAAATATGCATGTAGTGATATTCGATACAATTTCGATGAAATCGGAAGAGAGAAGTTCTACGAGACTCGTGATTTCAAGAGAGCTGAGAAGGGGCAGGACAAGGATACTGATAAATGGATTTTCTATAAGCGTGCCATCGATGATGAGGATTTTGGAGTTCCAATTGTTCTTGATTAAGATTTTTGTCACAAGTTTTCTGCTATAGTTATAAATCTCCAATTCTTCATCTCAATTTTTTTTTGAGTTTTCCCTGTAGTCCTTTCTAATGGGATGCTTTTCAATGTAACGTGAATCCTCTGATAGAAGACCCAGAAAACTGTCAAATTTAAGCTCAATTATTTCAATTGCTGTGAAAGACATAAAAAACTGTCAACTGACAAAATGTTAACTATAAAATTTCAAAAATTTTTCAGTTGACCATTTTTTGATGTCTTTTACAGGAATTGAGATAATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>404 220 152 94 71 59</canonical_bands>
                <polymorphic_bands>624 152 94 71 59</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCTTCGGTAAAATGAAATTCT</pcr_primer_p1>
		<pcr_primer_p2>AAATCCATTTATCAGTATCCTTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCTTCGGTAAAATGAAATTCTAAATTCGACTTCTAAATTGTTTTTTGTTGCAGGAAGCGCAAAGGAATTGATGAAAAGATTTAAAAACTATCTCAACAAAGACAAAAAATTTGAACGTGATCCTGTCAAATATGCATGTAGTGATATTCGATACAATTTCGATGAAATCGGAAGAGAGAAGTTCTACGAGACTCGTGATTTCAAGAGAGCTGAGAAGGGGCAGGACAAGGATACTGATAAATGGATTT</canonical_amplicon>
		<polymorphic_amplicon>GATCTTCGGTAAAATGAAATTCTAAATTCGACTTCTAAATTGTTTTTTGTTGCAGGAAGCGCAAAGGAATTGATGAAAAGATTTRAAAACTATCTCAACAAAGACAAAAAATTTGAACGTGATCCTGTCAAATATGCATGTAGTGATATTCGATACAATTTCGATGAAATCGGAAGAGAGAAGTTCTACGAGACTCGTGATTTCAAGAGAGCTGAGAAGGGGCAGGACAAGGATACTGATAAATGGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33219</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>380557</contig_pos>
        <strand>+</strand>
        <context>TTGGCTCTTT[A/T]TGATttaacg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATTTTGGGGAACCTGTAAACACTTATAATATGAAAACTTTGGCTCTTT</left_flank>
        <right_flank>TGATTTAACGGGGGTTTAAATTTTTGACGGGGGTTTAAATAAAATTTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATTCTCAGAATCAATTTTTTTTCATTGCATACAAACACATTTACATACAATAGACACCATTTAATTATGCTGAATGTGGTCGGAGTGGCAAAATGACAACAATATCATGTTTCATCTCGATTTCTGGCACCACCTTGTCAACTTCCTTGTTGTTATTGTTATTGGTAATCTAAACGTCACAAAATGATCTTGTTGTTATCTTGTTCTTTAGATACCTCGAGTATTGATGAAACCTTAATCTGGTCCGTTTTCGCATCTACCGATTCTGGAGACGTTGTATCAATGTCAGTAATTCCGGTTGACGGGGAAGACATTGCGAGATCGGTGGAGACTGTCGATGTGGTTGATTCAGGAGCTTCTGATATAAGGTTATTATAGTTGAAAAACTTTGGACGACGTTTACCTTTCTTCCGCCAGAATGGAATTAGTGGGGCATCAAGAAGTACAAATTTTGGGGAACCTGTAAACACTTATAATATGAAAACTTTGGCTCTTTATGATTTAACGGGGGTTTAAATTTTTGACGGGGGTTTAAATAAAATTTGAAAAATAAACGGGGGTTTTGAAAATTTGAAAGGGTTTTGAGAATTAACGGGGGTTTAAATATTAGACGGGGGTTTTCAAAAAGTGTCAGGATAATGTTTGGGGAAGTCCCCAAAATGTTCCAAAGTGCTACAGTTTCTTGTTTTTTGCTCATTTCAGTTTATTTATTCTTTTCTGAAATCATTTTCTTGTTTTTTTCTTTTTTCATTTCTAAAGTTTCATGGCACTGTTCTAGAATTACGGAACGAAAAAAACTTTATCCAAGCCTATCATCTAACCTTGGAAGCAGCTACAGGAGACTTAGAAAGGGAAGGGCGATCAAATAGTTGCTTTTAGAGAGGTTGAATGGTGTTGACGAGTCAAGTGATCCGGGAAAGGTACATTTGTATTTTGGATTCGAGGTTAGAACTAGCAGAGTTATGTAACTTGCCACTAATTTTCCAATGACTTAGAT</canonical>
            <polymorphic>TTTATTCTCAGAATCAATTTTTTTTCATTGCATACAAACACATTTACATACAATAGACACCATTTAATTATGCTGAATGTGGTCGGAGTGGCAAAATGACAACAATATCATGTTTCATCTCGATTTCTGGCACCACCTTGTCAACTTCCTTGTTGTTATTGTTATTGGTAATCTAAACGTCACAAAATGATCTTGTTGTTATCTTGTTCTTTAGATACCTCGAGTATTGATGAAACCTTAATCTGGTCCGTTTTCGCATCTACCGATTCTGGAGACGTTGTATCAATGTCAGTAATTCCGGTTGACGGGGAAGACATTGCGAGATCGGTGGAGACTGTCGATGTGGTTGATTCAGGAGCTTCTGATATAAGGTTATTATAGTTGAAAAACTTTGGACGACGTTTACCTTTCTTCCGCCAGAATGGAATTAGTGGGGCATCAAGAAGTACAAATTTTGGGGAACCTGTAAACACTTATAATATGAAAACTTTGGCTCTTTWTGATTTAACGGGGGTTTAAATTTTTGACGGGGGTTTAAATAAAATTTGAAAAATAAACGGGGGTTTTGAAAATTTGAAAGGGTTTTGAGAATTAACGGGGGTTTAAATATTAGACGGGGGTTTTCAAAAAGTGTCAGGATAATGTTTGGGGAAGTCCCCAAAATGTTCCAAAGTGCTACAGTTTCTTGTTTTTTGCTCATTTCAGTTTATTTATTCTTTTCTGAAATCATTTTCTTGTTTTTTTCTTTTTTCATTTCTAAAGTTTCATGGCACTGTTCTAGAATTACGGAACGAAAAAAACTTTATCCAAGCCTATCATCTAACCTTGGAAGCAGCTACAGGAGACTTAGAAAGGGAAGGGCGATCAAATAGTTGCTTTTAGAGAGGTTGAATGGTGTTGACGAGTCAAGTGATCCGGGAAAGGTACATTTGTATTTTGGATTCGAGGTTAGAACTAGCAGAGTTATGTAACTTGCCACTAATTTTCCAATGACTTAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTGGGGAACCTGTAAA</pcr_primer_p1>
		<pcr_primer_p2>AACAGGGGTTCTTCTCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>990</pcr_amplicon_size>
		<canonical_amplicon>AATTTTGGGGAACCTGTAAACACTTATAATATGAAAACTTTGGCTCTTTATGATTTAACGGGGGTTTAA</canonical_amplicon>
		<polymorphic_amplicon>AATTTTGGGGAACCTGTAAACACTTATAATATGAAAACTTTGGCTCTTTWTGATTTAACGGGGGTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33220</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>395602</contig_pos>
        <strand>+</strand>
        <context>GAATTTCTTG[A/G]GAAACACTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGAAGGTTTTCTGTCAAAACATTTTTTCTATGAATTTCGAATTTCTTG</left_flank>
        <right_flank>GAAACACTTTTCACAAAGTCACTCGAGGATAACCCCAATTAACCTGGGTC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAATTTTTAGTTGATTTTGTATCTTTTCGACCGTTTTCTGGAGTCTAGAGTTCGGCTGTCTAGTTTCCAATCACTTTGAAAATGTTGGAGGGTGTAAAACAGATCTAGATCAAAAACTTTGCACTAACAGAATTTTTGGAATGTTCCTAGTTTCTCAGCTATTTGCTTTCTGGAAGACACTTAGTTTTTGACCCGTTTGAGAACAAAAAACGTAAAAAAAAACAGACATCTTTCAGAAATCAGCAAATAGCTGGAAAACAAGAAATTTTGAAAAATTCTTTGATTGCAAAGTTTTCAATCTAGATCTTAAAGTTTTATAAATGGTCGAAACTTTGACAGTCGAGCTCCAGACTCCTGCAAACGGTCAAAATAACCAGCCATCAATTGAAAAATACTTTTGTATATCTGTTTGACCGGCACTGTAGCTAACTAAACAACGTCTTTCAAAATTGAAGGTTTTCTGTCAAAACATTTTTTCTATGAATTTCGAATTTCTTGAGAAACACTTTTCACAAAGTCACTCGAGGATAACCCCAATTAACCTGGGTCATATAGGGCACAGCTGCATTTGTTCCAATTTTCCACTTTTTCGGTTTTTTGAAAATCTCAAAAAAAACCTTTTTTCCGAAATGCAAATCCATTTGGTCAAAAATTCCCGTGATTAATATTGCTTTATCCGAACTGAAGACATTTTTATCCCAAGCTTTAAATTCTAATACCGATGTTTTTCTTTCAATGTTCTCATACAAATAACATTTCTTTGTTTCTTGATCCACCACCGCCCAGGCTAATCCCTCCCCTATCATCCTTACATGATCAGTTTCCTCCCAAACTTCTTGTAGTTGATCCTTGCTTCCCGGATGTTTCAGCTTCTCGTGGTCATTGTGCCGCTTCTCAGCTTCCTCATGTTCGCGTTTTGCCTTCTCTCGCTCCTCTGGACTCATTTGAGCCAACTTGTGATCCTCCTCCGCTTGCTTCTTCATCTCGTACTGCTTGAAG</canonical>
            <polymorphic>GTAATTTTTAGTTGATTTTGTATCTTTTCGACCGTTTTCTGGAGTCTAGAGTTCGGCTGTCTAGTTTCCAATCACTTTGAAAATGTTGGAGGGTGTAAAACAGATCTAGATCAAAAACTTTGCACTAACAGAATTTTTGGAATGTTCCTAGTTTCTCAGCTATTTGCTTTCTGGAAGACACTTAGTTTTTGACCCGTTTGAGAACAAAAAACGTAAAAAAAAACAGACATCTTTCAGAAATCAGCAAATAGCTGGAAAACAAGAAATTTTGAAAAATTCTTTGATTGCAAAGTTTTCAATCTAGATCTTAAAGTTTTATAAATGGTCGAAACTTTGACAGTCGAGCTCCAGACTCCTGCAAACGGTCAAAATAACCAGCCATCAATTGAAAAATACTTTTGTATATCTGTTTGACCGGCACTGTAGCTAACTAAACAACGTCTTTCAAAATTGAAGGTTTTCTGTCAAAACATTTTTTCTATGAATTTCGAATTTCTTGRGAAACACTTTTCACAAAGTCACTCGAGGATAACCCCAATTAACCTGGGTCATATAGGGCACAGCTGCATTTGTTCCAATTTTCCACTTTTTCGGTTTTTTGAAAATCTCAAAAAAAACCTTTTTTCCGAAATGCAAATCCATTTGGTCAAAAATTCCCGTGATTAATATTGCTTTATCCGAACTGAAGACATTTTTATCCCAAGCTTTAAATTCTAATACCGATGTTTTTCTTTCAATGTTCTCATACAAATAACATTTCTTTGTTTCTTGATCCACCACCGCCCAGGCTAATCCCTCCCCTATCATCCTTACATGATCAGTTTCCTCCCAAACTTCTTGTAGTTGATCCTTGCTTCCCGGATGTTTCAGCTTCTCGTGGTCATTGTGCCGCTTCTCAGCTTCCTCATGTTCGCGTTTTGCCTTCTCTCGCTCCTCTGGACTCATTTGAGCCAACTTGTGATCCTCCTCCGCTTGCTTCTTCATCTCGTACTGCTTGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>272 168 148 130 65 64 60 47 39 7</canonical_bands>
                <polymorphic_bands>420 168 130 65 64 60 47 39 7</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>496 478 26</canonical_bands>
                <polymorphic_bands>522 478</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTGAAGGTTTTCTGTCAAA</pcr_primer_p1>
		<pcr_primer_p2>TAAAAATGTCTTCAGTTCGGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTGAAGGTTTTCTGTCAAAACATTTTTTCTATGAATTTCGAATTTCTTGAGAAACACTTTTCACAAAGTCACTCGAGGATAACCCCAATTAACCTGGGTCATATAGGGCACAGCTGCATTTGTTCCAATTTTCCACTTTTTCGGTTTTTTGAAAATCTCAAAAAAAACCTTTTTTCCGAAATGCAAATCCATTTGGTCAAAAATTCCCGTGATTAATATTGCTTTATCCGAACTGAAGACATTTTTA</canonical_amplicon>
		<polymorphic_amplicon>AAATTGAAGGTTTTCTGTCAAAACATTTTTTCTATGAATTTCGAATTTCTTGRGAAACACTTTTCACAAAGTCACTCGAGGATAACCCCAATTAACCTGGGTCATATAGGGCACAGCTGCATTTGTTCCAATTTTCCACTTTTTCGGTTTTTTGAAAATCTCAAAAAAAACCTTTTTTCCGAAATGCAAATCCATTTGGTCAAAAATTCCCGTGATTAATATTGCTTTATCCGAACTGAAGACATTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33221</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>419536</contig_pos>
        <strand></strand>
        <context>attccaattt[C/T]cgcaatttcg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTGGATTTCGAATTTTAAGAAAGTTGCAATATTTCGAGATTCCAATTT</left_flank>
        <right_flank>CGCAATTTCGGAAAGTTACGAAATTTCGTGATTCCATTTTTTTTTAAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAAATACCGATATAGAAAATTTTGGAAAATTCAGATCGAAGAAAATTTCTAAATTCTTTTTATCTAAGTTCACTTTTTTTTTGAAAATTCGGAAATTCGGAAAACCCGTAAAAACACGACTTTTCAGAACTTCGATTGTTGAAATCTCAAAATATTACAATATTGAAGCTCCGATTTTAAAAACTCAGAAAATTACAGAAATTCGAAATTCAGTTTTTGGAAGTTTTGGAATATTTTAAAATGCCAGAATTCGGATTTTTTGAGAGTCCGGAAAATCACAGGATTTCGAAAATTTTATTTTTGAGAAATCGAGAAAATACAAGATTTCGAAATTACGATATTTTGAGATTCCAATTCTAGAAAGTTCGGATTATTCCGGATTTCAGTTCTTTAAAGATTTGAAAAATCACGAGATTCCAAATATTCAAGAATGACGACACTTCGAAATTCTGGATTTCGAATTTTAAGAAAGTTGCAATATTTCGAGATTCCAATTTCCGCAATTTCGGAAAGTTACGAAATTTCGTGATTCCATTTTTTTTTAAATTTTCGAATTTCCGAAATTTCTAATTTTAAAATTTGCAAACCCCAGGGACTCGAAAATATAAAGTTTCATTTTGCACACCCCGAATGTTGATTAGAACAAGTAGAATATATGAAAAACTGTCATATTCTACACCTTTTCGGCTTTAAACGACACGTCTCACGGGATTTGGCGAACAATTGCTAAATTAGCGGAAAAGTTGTCAAAACAGTTATTCAAAATGTAGATTTTAAATTTTTCGGGACTCCAATACCAATACCAATGTCCCTTCAATCTCAAAAACCATTTTCCCTCTTTTAGGTTGATCACAAAACACTGATGCAATTCCACCAATTAAATCGCTCGCGCATTGAACTTCCCATCCTTTCTCCAACCTATCTACCAACCTAGCCGTCACATTTCCGGGCACGCAACAATCTCCAAAACATTCCTCACTCCTCTTTGTCTTCTGCCA</canonical>
            <polymorphic>CCAAAATACCGATATAGAAAATTTTGGAAAATTCAGATCGAAGAAAATTTCTAAATTCTTTTTATCTAAGTTCACTTTTTTTTTGAAAATTCGGAAATTCGGAAAACCCGTAAAAACACGACTTTTCAGAACTTCGATTGTTGAAATCTCAAAATATTACAATATTGAAGCTCCGATTTTAAAAACTCAGAAAATTACAGAAATTCGAAATTCAGTTTTTGGAAGTTTTGGAATATTTTAAAATGCCAGAATTCGGATTTTTTGAGAGTCCGGAAAATCACAGGATTTCGAAAATTTTATTTTTGAGAAATCGAGAAAATACAAGATTTCGAAATTACGATATTTTGAGATTCCAATTCTAGAAAGTTCGGATTATTCCGGATTTCAGTTCTTTAAAGATTTGAAAAATCACGAGATTCCAAATATTCAAGAATGACGACACTTCGAAATTCTGGATTTCGAATTTTAAGAAAGTTGCAATATTTCGAGATTCCAATTTYCGCAATTTCGGAAAGTTACGAAATTTCGTGATTCCATTTTTTTTTAAATTTTCGAATTTCCGAAATTTCTAATTTTAAAATTTGCAAACCCCAGGGACTCGAAAATATAAAGTTTCATTTTGCACACCCCGAATGTTGATTAGAACAAGTAGAATATATGAAAAACTGTCATATTCTACACCTTTTCGGCTTTAAACGACACGTCTCACGGGATTTGGCGAACAATTGCTAAATTAGCGGAAAAGTTGTCAAAACAGTTATTCAAAATGTAGATTTTAAATTTTTCGGGACTCCAATACCAATACCAATGTCCCTTCAATCTCAAAAACCATTTTCCCTCTTTTAGGTTGATCACAAAACACTGATGCAATTCCACCAATTAAATCGCTCGCGCATTGAACTTCCCATCCTTTCTCCAACCTATCTACCAACCTAGCCGTCACATTTCCGGGCACGCAACAATCTCCAAAACATTCCTCACTCCTCTTTGTCTTCTGCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTCAGATCGAAGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GGTGTGCAAAATGAAACTTTA</pcr_primer_p2>
		<pcr_amplicon_size>602</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTCAGATCGAAGAAAATTTCTAAATTCTTTTTATCTAAGTTCACTTTTTTTTTGAAAATTCGGAAATTCGGAAAACCCGTAAAAACACGACTTTTCAGAACTTCGATTGTTGAAATCTCAAAATATTACAATATTGAAGCTCCGATTTTAAAAACTCAGAAAATTACAGAAATTCGAAATTCAGTTTTTGGAAGTTTTGGAATATTTTAAAATGCCAGAATTCGGATTTTTTGAGAGTCCGGAAAATCACAGGATTTCGAAAATTTTATTTTTGAGAAATCGAGAAAATACAAGATTTCGAAATTACGATATTTTGAGATTCCAATTCTAGAAAGTTCGGATTATTCCGGATTTCAGTTCTTTAAAGATTTGAAAAATCACGAGATTCCAAATATTCAAGAATGACGACACTTCGAAATTCTGGATTTCGAATTTTAAGAAAGTTGCAATATTTCGAGATTCCAATTTCCGCAATTTCGGAAAGTTACGAAATTTCGTGATTCCATTTTTTTTTAAATTTTCGAATTTCCGAAATTTCTAATTTTAAAATTTGCAAACCCCAGGGACTCGAAAATATAAAGTTTCATTTTGCACACC</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTCAGATCGAAGAAAATTTCTAAATTCTTTTTATCTAAGTTCACTTTTTTTTTGAAAATTCGGAAATTCGGAAAACCCGTAAAAACACGACTTTTCAGAACTTCGATTGTTGAAATCTCAAAATATTACAATATTGAAGCTCCGATTTTAAAAACTCAGAAAATTACAGAAATTCGAAATTCAGTTTTTGGAAGTTTTGGAATATTTTAAAATGCCAGAATTCGGATTTTTTGAGAGTCCGGAAAATCACAGGATTTCGAAAATTTTATTTTTGAGAAATCGAGAAAATACAAGATTTCGAAATTACGATATTTTGAGATTCCAATTCTAGAAAGTTCGGATTATTCCGGATTTCAGTTCTTTAAAGATTTGAAAAATCACGAGATTCCAAATATTCAAGAATGACGACACTTCGAAATTCTGGATTTCGAATTTTAAGAAAGTTGCAATATTTCGAGATTCCAATTTYCGCAATTTCGGAAAGTTACGAAATTTCGTGATTCCATTTTTTTTTAAATTTTCGAATTTCCGAAATTTCTAATTTTAAAATTTGCAAACCCCAGGGACTCGAAAATATAAAGTTTCATTTTGCACACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33222</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>450727</contig_pos>
        <strand></strand>
        <context>atattttctg[A/C]acgaaatcca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAACAAAATAAAGCGAATATGGATTCTGATAATTTCTAGATATTTTCTG</left_flank>
        <right_flank>ACGAAATCCAGATTTCTTGGTAAAAATGTGATCACTAGCCTTTTTAACAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCCCCCAAGTTCAATCTCAATTTTCTCAATTCCTATGCAAGATATCGAAAACATGCCAACGGACAAACGGACAGTTCTGATATTATGATAAACAATTTTTCCTATATCTTTCACAGGTATCAAGATAATTGATGTCAACGTTGATAGTTTGGAAGCCCTTCTATTACATGTTTTACGGTACAGAAATTTTTTTTGCCAATATTGAACTCACATTTTTTTTGAAGATGTTCGAATTCCGATCATCTCGTGAAAATTATTTCTTAATTCAATGTTAACACATTTTTTTCGGAAGAGATATCAAAAACTTATAAACTGGTAAGATTTTTTTAAATTTTTCACATTTTAAAAGACCTTTAGAAATTCAAATATCGAGATTTTTCCAAATTATGTCGAATTAGCAAAAGTCTGGCATCTGAAAATTTTCTTTTGTTTTAGAAAGACCTGCCCGAAAACAAAATAAAGCGAATATGGATTCTGATAATTTCTAGATATTTTCTGAACGAAATCCAGATTTCTTGGTAAAAATGTGATCACTAGCCTTTTTAACAATTCCTTGTTCGAAACCACAAACTTAAAAGCCCGAACGAGACTGAAGCAATGTCATATCCTTGCTTTGTAGATCAAACCAATTCCAAGACGAAAAATTCGCCGATAAGAAACATTCAAAAAAATATTTTTTCAGAAAAGCAAAAGTATTTCTTCTTACTTCTGTAAACAATAGCAGTTTTTGAAATTTGTGGTTTTTTCCAGGAATAATTCAGTTTTTGTGTTTTCTTTGATGCCAAAACATGTGTAAAAGAAAAACGGAAGGATAAATGAAGAAACATTTGATCTTCTTGCAAATCAAAGAGATAAGTGATATTGAAGAGTGATTGGCGGAGAATTGAGCATTCTCTCTCCCCATTTCATCTCATTCACATTTTGTTTATTTTATCTACCAGATGTTTTCTCCACTCTTTCTTGAGTTTTGCTCACTTTTGTTGGTAGTCTTGAATACAA</canonical>
            <polymorphic>AGCCCCCAAGTTCAATCTCAATTTTCTCAATTCCTATGCAAGATATCGAAAACATGCCAACGGACAAACGGACAGTTCTGATATTATGATAAACAATTTTTCCTATATCTTTCACAGGTATCAAGATAATTGATGTCAACGTTGATAGTTTGGAAGCCCTTCTATTACATGTTTTACGGTACAGAAATTTTTTTTGCCAATATTGAACTCACATTTTTTTTGAAGATGTTCGAATTCCGATCATCTCGTGAAAATTATTTCTTAATTCAATGTTAACACATTTTTTTCGGAAGAGATATCAAAAACTTATAAACTGGTAAGATTTTTTTAAATTTTTCACATTTTAAAAGACCTTTAGAAATTCAAATATCGAGATTTTTCCAAATTATGTCGAATTAGCAAAAGTCTGGCATCTGAAAATTTTCTTTTGTTTTAGAAAGACCTGCCCGAAAACAAAATAAAGCGAATATGGATTCTGATAATTTCTAGATATTTTCTGMACGAAATCCAGATTTCTTGGTAAAAATGTGATCACTAGCCTTTTTAACAATTCCTTGTTCGAAACCACAAACTTAAAAGCCCGAACGAGACTGAAGCAATGTCATATCCTTGCTTTGTAGATCAAACCAATTCCAAGACGAAAAATTCGCCGATAAGAAACATTCAAAAAAATATTTTTTCAGAAAAGCAAAAGTATTTCTTCTTACTTCTGTAAACAATAGCAGTTTTTGAAATTTGTGGTTTTTTCCAGGAATAATTCAGTTTTTGTGTTTTCTTTGATGCCAAAACATGTGTAAAAGAAAAACGGAAGGATAAATGAAGAAACATTTGATCTTCTTGCAAATCAAAGAGATAAGTGATATTGAAGAGTGATTGGCGGAGAATTGAGCATTCTCTCTCCCCATTTCATCTCATTCACATTTTGTTTATTTTATCTACCAGATGTTTTCTCCACTCTTTCTTGAGTTTTGCTCACTTTTGTTGGTAGTCTTGAATACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>318 184 159 126 79 62 51 21</canonical_bands>
                <polymorphic_bands>318 205 159 126 79 62 51</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTTTTGTTTTAGAAAGACCTG</pcr_primer_p1>
		<pcr_primer_p2>GTTTCTTATCGGCGAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TTCTTTTGTTTTAGAAAGACCTGCCCGAAAACAAAATAAAGCGAATATGGATTCTGATAATTTCTAGATATTTTCTGAACGAAATCCAGATTTCTTGGTAAAAATGTGATCACTAGCCTTTTTAACAATTCCTTGTTCGAAACCACAAACTTAAAAGCCCGAACGAGACTGAAGCAATGTCATATCCTTGCTTTGTAGATCAAACCAATTCCAAGACGAAAAATTCGCCGATAAGAAAC</canonical_amplicon>
		<polymorphic_amplicon>TTCTTTTGTTTTAGAAAGACCTGCCCGAAAACAAAATAAAGCGAATATGGATTCTGATAATTTCTAGATATTTTCTGMACGAAATCCAGATTTCTTGGTAAAAATGTGATCACTAGCCTTTTTAACAATTCCTTGTTCGAAACCACAAACTTAAAAGCCCGAACGAGACTGAAGCAATGTCATATCCTTGCTTTGTAGATCAAACCAATTCCAAGACGAAAAATTCGCCGATAAGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33223</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>470663</contig_pos>
        <strand>+</strand>
        <context>TTGCTTGTTT[A/C]TCGCACGCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCACAAGTTCACACCTGCTCAACTTGTCTGAAAATCTGTTTGCTTGTTT</left_flank>
        <right_flank>TCGCACGCTCGTTTCTTTACACTATCGCCAGCGCCGGCTGAATGGATGGA</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAGCTCTCAATATATGTCTGATCAAAAAAGATCGAAAAAACTCGAAAAAAATTTTTTGGTCGAAAAACATCACATAAGGGTCCCCCCTTATGTGTTTTTTGAAAATTTCGAAACTCGTGAAATGACAGGCCCGCCGGGCCGGGCCTCCGAAATTCCGGAAAAAGCCCGGCCCGGCCCGGCCCGTTACAAGTATGTTAAAAATTGTTTTTTTGTCAAGACTCTTGTTTTTTTTTTTACGCTACTATCCCGTGACTCACAGCCAATTGAGTATTTTTCAGAATATTCTCAAATGGTTCCAATGATATTTCACGAATAGAGCGGTAGTGTTGTGACTATCACAGTTAGAACTACTGTATCTAGTCTAAACACCCGATTAGGAGACTATCTGATTTTTTTGTAACAAGAACCTGTAACATTCATAGCTCTCTGGACGTCTTCGGGAAATATTCACAAGTTCACACCTGCTCAACTTGTCTGAAAATCTGTTTGCTTGTTTCTCGCACGCTCGTTTCTTTACACTATCGCCAGCGCCGGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGGCCTTTGTCTGTATCATAGCAACCGTTTCATCGGACGATCGGCTAGTGCGGCGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACACGACAGCTCCTGTGAGCTGTTTATTGTTTCACGACTCCTCGCTTCCCAACTTTTTCAGCCAAACCACTCACCGCTCACTCTCGTTTCTCTGCGTCCCTGTCTGAGTGCG</canonical>
            <polymorphic>TTTGAGCTCTCAATATATGTCTGATCAAAAAAGATCGAAAAAACTCGAAAAAAATTTTTTGGTCGAAAAACATCACATAAGGGTCCCCCCTTATGTGTTTTTTGAAAATTTCGAAACTCGTGAAATGACAGGCCCGCCGGGCCGGGCCTCCGAAATTCCGGAAAAAGCCCGGCCCGGCCCGGCCCGTTACAAGTATGTTAAAAATTGTTTTTTTGTCAAGACTCTTGTTTTTTTTTTTACGCTACTATCCCGTGACTCACAGCCAATTGAGTATTTTTCAGAATATTCTCAAATGGTTCCAATGATATTTCACGAATAGAGCGGTAGTGTTGTGACTATCACAGTTAGAACTACTGTATCTAGTCTAAACACCCGATTAGGAGACTATCTGATTTTTTTGTAACAAGAACCTGTAACATTCATAGCTCTCTGGACGTCTTCGGGAAATATTCACAAGTTCACACCTGCTCAACTTGTCTGAAAATCTGTTTGCTTGTTTMTCGCACGCTCGTTTCTTTACACTATCGCCAGCGCCGGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGGCCTTTGTCTGTATCATAGCAACCGTTTCATCGGACGATCGGCTAGTGCGGCGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACACGACAGCTCCTGTGAGCTGTTTATTGTTTCACGACTCCTCGCTTCCCAACTTTTTCAGCCAAACCACTCACCGCTCACTCTCGTTTCTCTGCGTCCCTGTCTGAGTGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGTCTAAACACCCGATTAGG</pcr_primer_p1>
		<pcr_primer_p2>GATGAAACGGTTGCTATGATAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTAGTCTAAACACCCGATTAGGAGACTATCTGATTTTTTTGTAACAAGAACCTGTAACATTCATAGCTCTCTGGACGTCTTCGGGAAATATTCACAAGTTCACACCTGCTCAACTTGTCTGAAAATCTGTTTGCTTGTTTCTCGCACGCTCGTTTCTTTACACTATCGCCAGCGCCGGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGGCCTTTGTCTGTATCATAGCAACCGTTTCATC</canonical_amplicon>
		<polymorphic_amplicon>CTAGTCTAAACACCCGATTAGGAGACTATCTGATTTTTTTGTAACAAGAACCTGTAACATTCATAGCTCTCTGGACGTCTTCGGGAAATATTCACAAGTTCACACCTGCTCAACTTGTCTGAAAATCTGTTTGCTTGTTTMTCGCACGCTCGTTTCTTTACACTATCGCCAGCGCCGGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGGCCTTTGTCTGTATCATAGCAACCGTTTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33224</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>470689</contig_pos>
        <strand>+</strand>
        <context>TTTACACTAT[C/T]GCCAGCGCCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCTGAAAATCTGTTTGCTTGTTTCTCGCACGCTCGTTTCTTTACACTAT</left_flank>
        <right_flank>GCCAGCGCCGGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAGATCGAAAAAACTCGAAAAAAATTTTTTGGTCGAAAAACATCACATAAGGGTCCCCCCTTATGTGTTTTTTGAAAATTTCGAAACTCGTGAAATGACAGGCCCGCCGGGCCGGGCCTCCGAAATTCCGGAAAAAGCCCGGCCCGGCCCGGCCCGTTACAAGTATGTTAAAAATTGTTTTTTTGTCAAGACTCTTGTTTTTTTTTTTACGCTACTATCCCGTGACTCACAGCCAATTGAGTATTTTTCAGAATATTCTCAAATGGTTCCAATGATATTTCACGAATAGAGCGGTAGTGTTGTGACTATCACAGTTAGAACTACTGTATCTAGTCTAAACACCCGATTAGGAGACTATCTGATTTTTTTGTAACAAGAACCTGTAACATTCATAGCTCTCTGGACGTCTTCGGGAAATATTCACAAGTTCACACCTGCTCAACTTGTCTGAAAATCTGTTTGCTTGTTTCTCGCACGCTCGTTTCTTTACACTATCGCCAGCGCCGGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGGCCTTTGTCTGTATCATAGCAACCGTTTCATCGGACGATCGGCTAGTGCGGCGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACACGACAGCTCCTGTGAGCTGTTTATTGTTTCACGACTCCTCGCTTCCCAACTTTTTCAGCCAAACCACTCACCGCTCACTCTCGTTTCTCTGCGTCCCTGTCTGAGTGCGCACGTACCGTCGTGTGAACTATATGC</canonical>
            <polymorphic>AAAAAAGATCGAAAAAACTCGAAAAAAATTTTTTGGTCGAAAAACATCACATAAGGGTCCCCCCTTATGTGTTTTTTGAAAATTTCGAAACTCGTGAAATGACAGGCCCGCCGGGCCGGGCCTCCGAAATTCCGGAAAAAGCCCGGCCCGGCCCGGCCCGTTACAAGTATGTTAAAAATTGTTTTTTTGTCAAGACTCTTGTTTTTTTTTTTACGCTACTATCCCGTGACTCACAGCCAATTGAGTATTTTTCAGAATATTCTCAAATGGTTCCAATGATATTTCACGAATAGAGCGGTAGTGTTGTGACTATCACAGTTAGAACTACTGTATCTAGTCTAAACACCCGATTAGGAGACTATCTGATTTTTTTGTAACAAGAACCTGTAACATTCATAGCTCTCTGGACGTCTTCGGGAAATATTCACAAGTTCACACCTGCTCAACTTGTCTGAAAATCTGTTTGCTTGTTTCTCGCACGCTCGTTTCTTTACACTATYGCCAGCGCCGGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGGCCTTTGTCTGTATCATAGCAACCGTTTCATCGGACGATCGGCTAGTGCGGCGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACACGACAGCTCCTGTGAGCTGTTTATTGTTTCACGACTCCTCGCTTCCCAACTTTTTCAGCCAAACCACTCACCGCTCACTCTCGTTTCTCTGCGTCCCTGTCTGAGTGCGCACGTACCGTCGTGTGAACTATATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGTCTAAACACCCGATTAGG</pcr_primer_p1>
		<pcr_primer_p2>GATGAAACGGTTGCTATGATAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTAGTCTAAACACCCGATTAGGAGACTATCTGATTTTTTTGTAACAAGAACCTGTAACATTCATAGCTCTCTGGACGTCTTCGGGAAATATTCACAAGTTCACACCTGCTCAACTTGTCTGAAAATCTGTTTGCTTGTTTCTCGCACGCTCGTTTCTTTACACTATCGCCAGCGCCGGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGGCCTTTGTCTGTATCATAGCAACCGTTTCATC</canonical_amplicon>
		<polymorphic_amplicon>CTAGTCTAAACACCCGATTAGGAGACTATCTGATTTTTTTGTAACAAGAACCTGTAACATTCATAGCTCTCTGGACGTCTTCGGGAAATATTCACAAGTTCACACCTGCTCAACTTGTCTGAAAATCTGTTTGCTTGTTTCTCGCACGCTCGTTTCTTTACACTATYGCCAGCGCCGGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGGCCTTTGTCTGTATCATAGCAACCGTTTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33225</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>470810</contig_pos>
        <strand>+</strand>
        <context>CTTCTTTAGG[C/T]TCTCTACTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCGTTTCATCGGACGATCGGCTAGTGCGGCGCACTCAGACTTCTTTAGG</left_flank>
        <right_flank>TCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCGAAATTCCGGAAAAAGCCCGGCCCGGCCCGGCCCGTTACAAGTATGTTAAAAATTGTTTTTTTGTCAAGACTCTTGTTTTTTTTTTTACGCTACTATCCCGTGACTCACAGCCAATTGAGTATTTTTCAGAATATTCTCAAATGGTTCCAATGATATTTCACGAATAGAGCGGTAGTGTTGTGACTATCACAGTTAGAACTACTGTATCTAGTCTAAACACCCGATTAGGAGACTATCTGATTTTTTTGTAACAAGAACCTGTAACATTCATAGCTCTCTGGACGTCTTCGGGAAATATTCACAAGTTCACACCTGCTCAACTTGTCTGAAAATCTGTTTGCTTGTTTCTCGCACGCTCGTTTCTTTACACTATCGCCAGCGCCGGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGGCCTTTGTCTGTATCATAGCAACCGTTTCATCGGACGATCGGCTAGTGCGGCGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACACGACAGCTCCTGTGAGCTGTTTATTGTTTCACGACTCCTCGCTTCCCAACTTTTTCAGCCAAACCACTCACCGCTCACTCTCGTTTCTCTGCGTCCCTGTCTGAGTGCGCACGTACCGTCGTGTGAACTATATGCAAGTGTTGTTCTCACCAGTAGCAGCTCCTGCCCTTGTGTTGTTCATGAGTTTCAAGAGCAACAGTGAGTTTCACTATCTCTGTGTTCTATTAACAAGAAAAGCTCAACTCCGCCCCATAGC</canonical>
            <polymorphic>CTCCGAAATTCCGGAAAAAGCCCGGCCCGGCCCGGCCCGTTACAAGTATGTTAAAAATTGTTTTTTTGTCAAGACTCTTGTTTTTTTTTTTACGCTACTATCCCGTGACTCACAGCCAATTGAGTATTTTTCAGAATATTCTCAAATGGTTCCAATGATATTTCACGAATAGAGCGGTAGTGTTGTGACTATCACAGTTAGAACTACTGTATCTAGTCTAAACACCCGATTAGGAGACTATCTGATTTTTTTGTAACAAGAACCTGTAACATTCATAGCTCTCTGGACGTCTTCGGGAAATATTCACAAGTTCACACCTGCTCAACTTGTCTGAAAATCTGTTTGCTTGTTTCTCGCACGCTCGTTTCTTTACACTATCGCCAGCGCCGGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGGCCTTTGTCTGTATCATAGCAACCGTTTCATCGGACGATCGGCTAGTGCGGCGCACTCAGACTTCTTTAGGYTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACACGACAGCTCCTGTGAGCTGTTTATTGTTTCACGACTCCTCGCTTCCCAACTTTTTCAGCCAAACCACTCACCGCTCACTCTCGTTTCTCTGCGTCCCTGTCTGAGTGCGCACGTACCGTCGTGTGAACTATATGCAAGTGTTGTTCTCACCAGTAGCAGCTCCTGCCCTTGTGTTGTTCATGAGTTTCAAGAGCAACAGTGAGTTTCACTATCTCTGTGTTCTATTAACAAGAAAAGCTCAACTCCGCCCCATAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACGCTCGTTTCTTTACACTA</pcr_primer_p1>
		<pcr_primer_p2>CATAAGAGGACACAGAGAAGTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACGCTCGTTTCTTTACACTATCGCCAGCGCCGGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGGCCTTTGTCTGTATCATAGCAACCGTTTCATCGGACGATCGGCTAGTGCGGCGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATG</canonical_amplicon>
		<polymorphic_amplicon>CACGCTCGTTTCTTTACACTATCGCCAGCGCCGGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGGCCTTTGTCTGTATCATAGCAACCGTTTCATCGGACGATCGGCTAGTGCGGCGCACTCAGACTTCTTTAGGYTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33226</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>470892</contig_pos>
        <strand>+</strand>
        <context>CGCCGCTCAC[C/T]CTCACTTCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCAC</left_flank>
        <right_flank>CTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTTTACGCTACTATCCCGTGACTCACAGCCAATTGAGTATTTTTCAGAATATTCTCAAATGGTTCCAATGATATTTCACGAATAGAGCGGTAGTGTTGTGACTATCACAGTTAGAACTACTGTATCTAGTCTAAACACCCGATTAGGAGACTATCTGATTTTTTTGTAACAAGAACCTGTAACATTCATAGCTCTCTGGACGTCTTCGGGAAATATTCACAAGTTCACACCTGCTCAACTTGTCTGAAAATCTGTTTGCTTGTTTCTCGCACGCTCGTTTCTTTACACTATCGCCAGCGCCGGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGGCCTTTGTCTGTATCATAGCAACCGTTTCATCGGACGATCGGCTAGTGCGGCGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACACGACAGCTCCTGTGAGCTGTTTATTGTTTCACGACTCCTCGCTTCCCAACTTTTTCAGCCAAACCACTCACCGCTCACTCTCGTTTCTCTGCGTCCCTGTCTGAGTGCGCACGTACCGTCGTGTGAACTATATGCAAGTGTTGTTCTCACCAGTAGCAGCTCCTGCCCTTGTGTTGTTCATGAGTTTCAAGAGCAACAGTGAGTTTCACTATCTCTGTGTTCTATTAACAAGAAAAGCTCAACTCCGCCCCATAGCTTCCAGCTACTGTTCATATCAGCATAGAAGCTCGCACGGGTAGTAGTGAGCCCTTCTGTTTTCCAGCTAGTCTAGAGTAGTA</canonical>
            <polymorphic>TTTTTTTTTACGCTACTATCCCGTGACTCACAGCCAATTGAGTATTTTTCAGAATATTCTCAAATGGTTCCAATGATATTTCACGAATAGAGCGGTAGTGTTGTGACTATCACAGTTAGAACTACTGTATCTAGTCTAAACACCCGATTAGGAGACTATCTGATTTTTTTGTAACAAGAACCTGTAACATTCATAGCTCTCTGGACGTCTTCGGGAAATATTCACAAGTTCACACCTGCTCAACTTGTCTGAAAATCTGTTTGCTTGTTTCTCGCACGCTCGTTTCTTTACACTATCGCCAGCGCCGGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGGCCTTTGTCTGTATCATAGCAACCGTTTCATCGGACGATCGGCTAGTGCGGCGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACYCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACACGACAGCTCCTGTGAGCTGTTTATTGTTTCACGACTCCTCGCTTCCCAACTTTTTCAGCCAAACCACTCACCGCTCACTCTCGTTTCTCTGCGTCCCTGTCTGAGTGCGCACGTACCGTCGTGTGAACTATATGCAAGTGTTGTTCTCACCAGTAGCAGCTCCTGCCCTTGTGTTGTTCATGAGTTTCAAGAGCAACAGTGAGTTTCACTATCTCTGTGTTCTATTAACAAGAAAAGCTCAACTCCGCCCCATAGCTTCCAGCTACTGTTCATATCAGCATAGAAGCTCGCACGGGTAGTAGTGAGCCCTTCTGTTTTCCAGCTAGTCTAGAGTAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCACTCAGACTTCTTTAGG</pcr_primer_p1>
		<pcr_primer_p2>TGTCAGAGTGAGAGATTAAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>CGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACA</canonical_amplicon>
		<polymorphic_amplicon>CGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACYCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33227</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>470938</contig_pos>
        <strand>+</strand>
        <context>AATATCGTGT[A/G]RACTATATGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGT</left_flank>
        <right_flank>GACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCAGAATATTCTCAAATGGTTCCAATGATATTTCACGAATAGAGCGGTAGTGTTGTGACTATCACAGTTAGAACTACTGTATCTAGTCTAAACACCCGATTAGGAGACTATCTGATTTTTTTGTAACAAGAACCTGTAACATTCATAGCTCTCTGGACGTCTTCGGGAAATATTCACAAGTTCACACCTGCTCAACTTGTCTGAAAATCTGTTTGCTTGTTTCTCGCACGCTCGTTTCTTTACACTATCGCCAGCGCCGGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGGCCTTTGTCTGTATCATAGCAACCGTTTCATCGGACGATCGGCTAGTGCGGCGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACACGACAGCTCCTGTGAGCTGTTTATTGTTTCACGACTCCTCGCTTCCCAACTTTTTCAGCCAAACCACTCACCGCTCACTCTCGTTTCTCTGCGTCCCTGTCTGAGTGCGCACGTACCGTCGTGTGAACTATATGCAAGTGTTGTTCTCACCAGTAGCAGCTCCTGCCCTTGTGTTGTTCATGAGTTTCAAGAGCAACAGTGAGTTTCACTATCTCTGTGTTCTATTAACAAGAAAAGCTCAACTCCGCCCCATAGCTTCCAGCTACTGTTCATATCAGCATAGAAGCTCGCACGGGTAGTAGTGAGCCCTTCTGTTTTCCAGCTAGTCTAGAGTAGTAGACCTTTCATGAATTGGCTCAATCATCTAGCTTTTTATCGTTACAT</canonical>
            <polymorphic>TTTCAGAATATTCTCAAATGGTTCCAATGATATTTCACGAATAGAGCGGTAGTGTTGTGACTATCACAGTTAGAACTACTGTATCTAGTCTAAACACCCGATTAGGAGACTATCTGATTTTTTTGTAACAAGAACCTGTAACATTCATAGCTCTCTGGACGTCTTCGGGAAATATTCACAAGTTCACACCTGCTCAACTTGTCTGAAAATCTGTTTGCTTGTTTCTCGCACGCTCGTTTCTTTACACTATCGCCAGCGCCGGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGGCCTTTGTCTGTATCATAGCAACCGTTTCATCGGACGATCGGCTAGTGCGGCGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTRGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACACGACAGCTCCTGTGAGCTGTTTATTGTTTCACGACTCCTCGCTTCCCAACTTTTTCAGCCAAACCACTCACCGCTCACTCTCGTTTCTCTGCGTCCCTGTCTGAGTGCGCACGTACCGTCGTGTGAACTATATGCAAGTGTTGTTCTCACCAGTAGCAGCTCCTGCCCTTGTGTTGTTCATGAGTTTCAAGAGCAACAGTGAGTTTCACTATCTCTGTGTTCTATTAACAAGAAAAGCTCAACTCCGCCCCATAGCTTCCAGCTACTGTTCATATCAGCATAGAAGCTCGCACGGGTAGTAGTGAGCCCTTCTGTTTTCCAGCTAGTCTAGAGTAGTAGACCTTTCATGAATTGGCTCAATCATCTAGCTTTTTATCGTTACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>82 80 73 69 61 42 37 36 35 33 30 30 29 28 28 25 24 17 17 16 15 15 14 14 12 12 12 11 10 9 8 8 7 7 7 7 7 6 5 4 4 4 4 2 2 2</canonical_bands>
                <polymorphic_bands>82 80 73 69 61 42 37 36 35 33 30 30 29 28 28 25 24 17 17 17 16 15 14 14 12 12 12 11 10 9 8 8 7 7 7 7 7 6 5 4 4 4 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGCACTCAGACTTCTTTAGG</pcr_primer_p1>
		<pcr_primer_p2>TGTCAGAGTGAGAGATTAAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>CGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACA</canonical_amplicon>
		<polymorphic_amplicon>CGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTRGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33228</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>470939</contig_pos>
        <strand>+</strand>
        <context>ATATCGTGTR[A/G]ACTATATGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTG</left_flank>
        <right_flank>ACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAGAATATTCTCAAATGGTTCCAATGATATTTCACGAATAGAGCGGTAGTGTTGTGACTATCACAGTTAGAACTACTGTATCTAGTCTAAACACCCGATTAGGAGACTATCTGATTTTTTTGTAACAAGAACCTGTAACATTCATAGCTCTCTGGACGTCTTCGGGAAATATTCACAAGTTCACACCTGCTCAACTTGTCTGAAAATCTGTTTGCTTGTTTCTCGCACGCTCGTTTCTTTACACTATCGCCAGCGCCGGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGGCCTTTGTCTGTATCATAGCAACCGTTTCATCGGACGATCGGCTAGTGCGGCGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACACGACAGCTCCTGTGAGCTGTTTATTGTTTCACGACTCCTCGCTTCCCAACTTTTTCAGCCAAACCACTCACCGCTCACTCTCGTTTCTCTGCGTCCCTGTCTGAGTGCGCACGTACCGTCGTGTGAACTATATGCAAGTGTTGTTCTCACCAGTAGCAGCTCCTGCCCTTGTGTTGTTCATGAGTTTCAAGAGCAACAGTGAGTTTCACTATCTCTGTGTTCTATTAACAAGAAAAGCTCAACTCCGCCCCATAGCTTCCAGCTACTGTTCATATCAGCATAGAAGCTCGCACGGGTAGTAGTGAGCCCTTCTGTTTTCCAGCTAGTCTAGAGTAGTAGACCTTTCATGAATTGGCTCAATCATCTAGCTTTTTATCGTTACATG</canonical>
            <polymorphic>TTCAGAATATTCTCAAATGGTTCCAATGATATTTCACGAATAGAGCGGTAGTGTTGTGACTATCACAGTTAGAACTACTGTATCTAGTCTAAACACCCGATTAGGAGACTATCTGATTTTTTTGTAACAAGAACCTGTAACATTCATAGCTCTCTGGACGTCTTCGGGAAATATTCACAAGTTCACACCTGCTCAACTTGTCTGAAAATCTGTTTGCTTGTTTCTCGCACGCTCGTTTCTTTACACTATCGCCAGCGCCGGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGGCCTTTGTCTGTATCATAGCAACCGTTTCATCGGACGATCGGCTAGTGCGGCGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGRACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACACGACAGCTCCTGTGAGCTGTTTATTGTTTCACGACTCCTCGCTTCCCAACTTTTTCAGCCAAACCACTCACCGCTCACTCTCGTTTCTCTGCGTCCCTGTCTGAGTGCGCACGTACCGTCGTGTGAACTATATGCAAGTGTTGTTCTCACCAGTAGCAGCTCCTGCCCTTGTGTTGTTCATGAGTTTCAAGAGCAACAGTGAGTTTCACTATCTCTGTGTTCTATTAACAAGAAAAGCTCAACTCCGCCCCATAGCTTCCAGCTACTGTTCATATCAGCATAGAAGCTCGCACGGGTAGTAGTGAGCCCTTCTGTTTTCCAGCTAGTCTAGAGTAGTAGACCTTTCATGAATTGGCTCAATCATCTAGCTTTTTATCGTTACATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCACTCAGACTTCTTTAGG</pcr_primer_p1>
		<pcr_primer_p2>TGTCAGAGTGAGAGATTAAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>CGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACA</canonical_amplicon>
		<polymorphic_amplicon>CGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGRACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33229</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>470952</contig_pos>
        <strand>+</strand>
        <context>TATATGCAAG[G/T]GTTGCTCACA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAG</left_flank>
        <right_flank>GTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAATGGTTCCAATGATATTTCACGAATAGAGCGGTAGTGTTGTGACTATCACAGTTAGAACTACTGTATCTAGTCTAAACACCCGATTAGGAGACTATCTGATTTTTTTGTAACAAGAACCTGTAACATTCATAGCTCTCTGGACGTCTTCGGGAAATATTCACAAGTTCACACCTGCTCAACTTGTCTGAAAATCTGTTTGCTTGTTTCTCGCACGCTCGTTTCTTTACACTATCGCCAGCGCCGGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGGCCTTTGTCTGTATCATAGCAACCGTTTCATCGGACGATCGGCTAGTGCGGCGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACACGACAGCTCCTGTGAGCTGTTTATTGTTTCACGACTCCTCGCTTCCCAACTTTTTCAGCCAAACCACTCACCGCTCACTCTCGTTTCTCTGCGTCCCTGTCTGAGTGCGCACGTACCGTCGTGTGAACTATATGCAAGTGTTGTTCTCACCAGTAGCAGCTCCTGCCCTTGTGTTGTTCATGAGTTTCAAGAGCAACAGTGAGTTTCACTATCTCTGTGTTCTATTAACAAGAAAAGCTCAACTCCGCCCCATAGCTTCCAGCTACTGTTCATATCAGCATAGAAGCTCGCACGGGTAGTAGTGAGCCCTTCTGTTTTCCAGCTAGTCTAGAGTAGTAGACCTTTCATGAATTGGCTCAATCATCTAGCTTTTTATCGTTACATGAGCCTAAATAATA</canonical>
            <polymorphic>CAAATGGTTCCAATGATATTTCACGAATAGAGCGGTAGTGTTGTGACTATCACAGTTAGAACTACTGTATCTAGTCTAAACACCCGATTAGGAGACTATCTGATTTTTTTGTAACAAGAACCTGTAACATTCATAGCTCTCTGGACGTCTTCGGGAAATATTCACAAGTTCACACCTGCTCAACTTGTCTGAAAATCTGTTTGCTTGTTTCTCGCACGCTCGTTTCTTTACACTATCGCCAGCGCCGGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGGCCTTTGTCTGTATCATAGCAACCGTTTCATCGGACGATCGGCTAGTGCGGCGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGKGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACACGACAGCTCCTGTGAGCTGTTTATTGTTTCACGACTCCTCGCTTCCCAACTTTTTCAGCCAAACCACTCACCGCTCACTCTCGTTTCTCTGCGTCCCTGTCTGAGTGCGCACGTACCGTCGTGTGAACTATATGCAAGTGTTGTTCTCACCAGTAGCAGCTCCTGCCCTTGTGTTGTTCATGAGTTTCAAGAGCAACAGTGAGTTTCACTATCTCTGTGTTCTATTAACAAGAAAAGCTCAACTCCGCCCCATAGCTTCCAGCTACTGTTCATATCAGCATAGAAGCTCGCACGGGTAGTAGTGAGCCCTTCTGTTTTCCAGCTAGTCTAGAGTAGTAGACCTTTCATGAATTGGCTCAATCATCTAGCTTTTTATCGTTACATGAGCCTAAATAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>94 82 73 69 61 42 36 35 33 30 30 29 28 28 25 24 23 17 17 16 15 15 14 14 12 12 12 11 10 9 8 8 7 7 7 7 7 6 5 4 4 4 4 2 2 2</canonical_bands>
                <polymorphic_bands>94 82 73 69 61 42 36 35 33 30 30 29 28 28 25 24 23 22 17 17 16 15 14 14 12 12 12 11 10 9 8 8 7 7 7 7 6 5 4 4 4 4 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGCACTCAGACTTCTTTAGG</pcr_primer_p1>
		<pcr_primer_p2>TGTCAGAGTGAGAGATTAAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>CGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACA</canonical_amplicon>
		<polymorphic_amplicon>CGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGKGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33230</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>470970</contig_pos>
        <strand>+</strand>
        <context>ACAACAGCCG[C/T]AGCTCCYGCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCG</left_flank>
        <right_flank>AGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCACGAATAGAGCGGTAGTGTTGTGACTATCACAGTTAGAACTACTGTATCTAGTCTAAACACCCGATTAGGAGACTATCTGATTTTTTTGTAACAAGAACCTGTAACATTCATAGCTCTCTGGACGTCTTCGGGAAATATTCACAAGTTCACACCTGCTCAACTTGTCTGAAAATCTGTTTGCTTGTTTCTCGCACGCTCGTTTCTTTACACTATCGCCAGCGCCGGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGGCCTTTGTCTGTATCATAGCAACCGTTTCATCGGACGATCGGCTAGTGCGGCGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACACGACAGCTCCTGTGAGCTGTTTATTGTTTCACGACTCCTCGCTTCCCAACTTTTTCAGCCAAACCACTCACCGCTCACTCTCGTTTCTCTGCGTCCCTGTCTGAGTGCGCACGTACCGTCGTGTGAACTATATGCAAGTGTTGTTCTCACCAGTAGCAGCTCCTGCCCTTGTGTTGTTCATGAGTTTCAAGAGCAACAGTGAGTTTCACTATCTCTGTGTTCTATTAACAAGAAAAGCTCAACTCCGCCCCATAGCTTCCAGCTACTGTTCATATCAGCATAGAAGCTCGCACGGGTAGTAGTGAGCCCTTCTGTTTTCCAGCTAGTCTAGAGTAGTAGACCTTTCATGAATTGGCTCAATCATCTAGCTTTTTATCGTTACATGAGCCTAAATAATATTTTTAAGACATCAGGCC</canonical>
            <polymorphic>TTTCACGAATAGAGCGGTAGTGTTGTGACTATCACAGTTAGAACTACTGTATCTAGTCTAAACACCCGATTAGGAGACTATCTGATTTTTTTGTAACAAGAACCTGTAACATTCATAGCTCTCTGGACGTCTTCGGGAAATATTCACAAGTTCACACCTGCTCAACTTGTCTGAAAATCTGTTTGCTTGTTTCTCGCACGCTCGTTTCTTTACACTATCGCCAGCGCCGGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGGCCTTTGTCTGTATCATAGCAACCGTTTCATCGGACGATCGGCTAGTGCGGCGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGYAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACACGACAGCTCCTGTGAGCTGTTTATTGTTTCACGACTCCTCGCTTCCCAACTTTTTCAGCCAAACCACTCACCGCTCACTCTCGTTTCTCTGCGTCCCTGTCTGAGTGCGCACGTACCGTCGTGTGAACTATATGCAAGTGTTGTTCTCACCAGTAGCAGCTCCTGCCCTTGTGTTGTTCATGAGTTTCAAGAGCAACAGTGAGTTTCACTATCTCTGTGTTCTATTAACAAGAAAAGCTCAACTCCGCCCCATAGCTTCCAGCTACTGTTCATATCAGCATAGAAGCTCGCACGGGTAGTAGTGAGCCCTTCTGTTTTCCAGCTAGTCTAGAGTAGTAGACCTTTCATGAATTGGCTCAATCATCTAGCTTTTTATCGTTACATGAGCCTAAATAATATTTTTAAGACATCAGGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>414 174 171 158 83</canonical_bands>
                <polymorphic_bands>414 241 174 171</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGNNNCTG</site>
                <isoschizomers>
                    <enzyme>AlwNI</enzyme>
                    <enzyme>CaiI</enzyme>
                </isoschizomers>
                <canonical_bands>505 153 151 103 88</canonical_bands>
                <polymorphic_bands>593 153 151 103</polymorphic_bands>
            </assay>
            <assay>
                <site>GCANNNNNTGC</site>
                <isoschizomers>
                    <enzyme>ApaBI</enzyme>
                    <enzyme>BstAPI</enzyme>
                </isoschizomers>
                <canonical_bands>484 253 241 22</canonical_bands>
                <polymorphic_bands>484 263 253</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>316 254 241 167 22</canonical_bands>
                <polymorphic_bands>316 263 254 167</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>319 257 244 97 83</canonical_bands>
                <polymorphic_bands>327 319 257 97</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>501 319 97 83</canonical_bands>
                <polymorphic_bands>584 319 97</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>499 260 241</canonical_bands>
                <polymorphic_bands>740 260</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGCACTCAGACTTCTTTAGG</pcr_primer_p1>
		<pcr_primer_p2>TGTCAGAGTGAGAGATTAAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>CGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACA</canonical_amplicon>
		<polymorphic_amplicon>CGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGYAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33231</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>470977</contig_pos>
        <strand>+</strand>
        <context>CCGYAGCTCC[C/T]GCCTTGTGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCC</left_flank>
        <right_flank>GCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAGAGCGGTAGTGTTGTGACTATCACAGTTAGAACTACTGTATCTAGTCTAAACACCCGATTAGGAGACTATCTGATTTTTTTGTAACAAGAACCTGTAACATTCATAGCTCTCTGGACGTCTTCGGGAAATATTCACAAGTTCACACCTGCTCAACTTGTCTGAAAATCTGTTTGCTTGTTTCTCGCACGCTCGTTTCTTTACACTATCGCCAGCGCCGGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGGCCTTTGTCTGTATCATAGCAACCGTTTCATCGGACGATCGGCTAGTGCGGCGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACACGACAGCTCCTGTGAGCTGTTTATTGTTTCACGACTCCTCGCTTCCCAACTTTTTCAGCCAAACCACTCACCGCTCACTCTCGTTTCTCTGCGTCCCTGTCTGAGTGCGCACGTACCGTCGTGTGAACTATATGCAAGTGTTGTTCTCACCAGTAGCAGCTCCTGCCCTTGTGTTGTTCATGAGTTTCAAGAGCAACAGTGAGTTTCACTATCTCTGTGTTCTATTAACAAGAAAAGCTCAACTCCGCCCCATAGCTTCCAGCTACTGTTCATATCAGCATAGAAGCTCGCACGGGTAGTAGTGAGCCCTTCTGTTTTCCAGCTAGTCTAGAGTAGTAGACCTTTCATGAATTGGCTCAATCATCTAGCTTTTTATCGTTACATGAGCCTAAATAATATTTTTAAGACATCAGGCCGAACGGG</canonical>
            <polymorphic>AATAGAGCGGTAGTGTTGTGACTATCACAGTTAGAACTACTGTATCTAGTCTAAACACCCGATTAGGAGACTATCTGATTTTTTTGTAACAAGAACCTGTAACATTCATAGCTCTCTGGACGTCTTCGGGAAATATTCACAAGTTCACACCTGCTCAACTTGTCTGAAAATCTGTTTGCTTGTTTCTCGCACGCTCGTTTCTTTACACTATCGCCAGCGCCGGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGGCCTTTGTCTGTATCATAGCAACCGTTTCATCGGACGATCGGCTAGTGCGGCGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCYGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACACGACAGCTCCTGTGAGCTGTTTATTGTTTCACGACTCCTCGCTTCCCAACTTTTTCAGCCAAACCACTCACCGCTCACTCTCGTTTCTCTGCGTCCCTGTCTGAGTGCGCACGTACCGTCGTGTGAACTATATGCAAGTGTTGTTCTCACCAGTAGCAGCTCCTGCCCTTGTGTTGTTCATGAGTTTCAAGAGCAACAGTGAGTTTCACTATCTCTGTGTTCTATTAACAAGAAAAGCTCAACTCCGCCCCATAGCTTCCAGCTACTGTTCATATCAGCATAGAAGCTCGCACGGGTAGTAGTGAGCCCTTCTGTTTTCCAGCTAGTCTAGAGTAGTAGACCTTTCATGAATTGGCTCAATCATCTAGCTTTTTATCGTTACATGAGCCTAAATAATATTTTTAAGACATCAGGCCGAACGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAGNNNCTG</site>
                <isoschizomers>
                    <enzyme>AlwNI</enzyme>
                    <enzyme>CaiI</enzyme>
                </isoschizomers>
                <canonical_bands>498 158 153 103 88</canonical_bands>
                <polymorphic_bands>586 158 153 103</polymorphic_bands>
            </assay>
            <assay>
                <site>GCANNNNNTGC</site>
                <isoschizomers>
                    <enzyme>ApaBI</enzyme>
                    <enzyme>BstAPI</enzyme>
                </isoschizomers>
                <canonical_bands>477 260 241 22</canonical_bands>
                <polymorphic_bands>477 263 260</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGCACTCAGACTTCTTTAGG</pcr_primer_p1>
		<pcr_primer_p2>TGTCAGAGTGAGAGATTAAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>CGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACA</canonical_amplicon>
		<polymorphic_amplicon>CGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCYGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33232</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>470994</contig_pos>
        <strand>+</strand>
        <context>TGTTGTTTAT[A/T]ACSTGTATGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTAT</left_flank>
        <right_flank>ACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGACTATCACAGTTAGAACTACTGTATCTAGTCTAAACACCCGATTAGGAGACTATCTGATTTTTTTGTAACAAGAACCTGTAACATTCATAGCTCTCTGGACGTCTTCGGGAAATATTCACAAGTTCACACCTGCTCAACTTGTCTGAAAATCTGTTTGCTTGTTTCTCGCACGCTCGTTTCTTTACACTATCGCCAGCGCCGGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGGCCTTTGTCTGTATCATAGCAACCGTTTCATCGGACGATCGGCTAGTGCGGCGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACACGACAGCTCCTGTGAGCTGTTTATTGTTTCACGACTCCTCGCTTCCCAACTTTTTCAGCCAAACCACTCACCGCTCACTCTCGTTTCTCTGCGTCCCTGTCTGAGTGCGCACGTACCGTCGTGTGAACTATATGCAAGTGTTGTTCTCACCAGTAGCAGCTCCTGCCCTTGTGTTGTTCATGAGTTTCAAGAGCAACAGTGAGTTTCACTATCTCTGTGTTCTATTAACAAGAAAAGCTCAACTCCGCCCCATAGCTTCCAGCTACTGTTCATATCAGCATAGAAGCTCGCACGGGTAGTAGTGAGCCCTTCTGTTTTCCAGCTAGTCTAGAGTAGTAGACCTTTCATGAATTGGCTCAATCATCTAGCTTTTTATCGTTACATGAGCCTAAATAATATTTTTAAGACATCAGGCCGAACGGGCACATAAATTGGAGGGT</canonical>
            <polymorphic>GTGACTATCACAGTTAGAACTACTGTATCTAGTCTAAACACCCGATTAGGAGACTATCTGATTTTTTTGTAACAAGAACCTGTAACATTCATAGCTCTCTGGACGTCTTCGGGAAATATTCACAAGTTCACACCTGCTCAACTTGTCTGAAAATCTGTTTGCTTGTTTCTCGCACGCTCGTTTCTTTACACTATCGCCAGCGCCGGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGGCCTTTGTCTGTATCATAGCAACCGTTTCATCGGACGATCGGCTAGTGCGGCGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATWACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACACGACAGCTCCTGTGAGCTGTTTATTGTTTCACGACTCCTCGCTTCCCAACTTTTTCAGCCAAACCACTCACCGCTCACTCTCGTTTCTCTGCGTCCCTGTCTGAGTGCGCACGTACCGTCGTGTGAACTATATGCAAGTGTTGTTCTCACCAGTAGCAGCTCCTGCCCTTGTGTTGTTCATGAGTTTCAAGAGCAACAGTGAGTTTCACTATCTCTGTGTTCTATTAACAAGAAAAGCTCAACTCCGCCCCATAGCTTCCAGCTACTGTTCATATCAGCATAGAAGCTCGCACGGGTAGTAGTGAGCCCTTCTGTTTTCCAGCTAGTCTAGAGTAGTAGACCTTTCATGAATTGGCTCAATCATCTAGCTTTTTATCGTTACATGAGCCTAAATAATATTTTTAAGACATCAGGCCGAACGGGCACATAAATTGGAGGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCACTCAGACTTCTTTAGG</pcr_primer_p1>
		<pcr_primer_p2>TGTCAGAGTGAGAGATTAAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>CGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACA</canonical_amplicon>
		<polymorphic_amplicon>CGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATWACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33233</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>470997</contig_pos>
        <strand>+</strand>
        <context>TGTTTATWAC[C/G]TGTATGAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGAC</left_flank>
        <right_flank>TGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTATCACAGTTAGAACTACTGTATCTAGTCTAAACACCCGATTAGGAGACTATCTGATTTTTTTGTAACAAGAACCTGTAACATTCATAGCTCTCTGGACGTCTTCGGGAAATATTCACAAGTTCACACCTGCTCAACTTGTCTGAAAATCTGTTTGCTTGTTTCTCGCACGCTCGTTTCTTTACACTATCGCCAGCGCCGGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGGCCTTTGTCTGTATCATAGCAACCGTTTCATCGGACGATCGGCTAGTGCGGCGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACACGACAGCTCCTGTGAGCTGTTTATTGTTTCACGACTCCTCGCTTCCCAACTTTTTCAGCCAAACCACTCACCGCTCACTCTCGTTTCTCTGCGTCCCTGTCTGAGTGCGCACGTACCGTCGTGTGAACTATATGCAAGTGTTGTTCTCACCAGTAGCAGCTCCTGCCCTTGTGTTGTTCATGAGTTTCAAGAGCAACAGTGAGTTTCACTATCTCTGTGTTCTATTAACAAGAAAAGCTCAACTCCGCCCCATAGCTTCCAGCTACTGTTCATATCAGCATAGAAGCTCGCACGGGTAGTAGTGAGCCCTTCTGTTTTCCAGCTAGTCTAGAGTAGTAGACCTTTCATGAATTGGCTCAATCATCTAGCTTTTTATCGTTACATGAGCCTAAATAATATTTTTAAGACATCAGGCCGAACGGGCACATAAATTGGAGGGTGTA</canonical>
            <polymorphic>ACTATCACAGTTAGAACTACTGTATCTAGTCTAAACACCCGATTAGGAGACTATCTGATTTTTTTGTAACAAGAACCTGTAACATTCATAGCTCTCTGGACGTCTTCGGGAAATATTCACAAGTTCACACCTGCTCAACTTGTCTGAAAATCTGTTTGCTTGTTTCTCGCACGCTCGTTTCTTTACACTATCGCCAGCGCCGGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGGCCTTTGTCTGTATCATAGCAACCGTTTCATCGGACGATCGGCTAGTGCGGCGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACSTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACACGACAGCTCCTGTGAGCTGTTTATTGTTTCACGACTCCTCGCTTCCCAACTTTTTCAGCCAAACCACTCACCGCTCACTCTCGTTTCTCTGCGTCCCTGTCTGAGTGCGCACGTACCGTCGTGTGAACTATATGCAAGTGTTGTTCTCACCAGTAGCAGCTCCTGCCCTTGTGTTGTTCATGAGTTTCAAGAGCAACAGTGAGTTTCACTATCTCTGTGTTCTATTAACAAGAAAAGCTCAACTCCGCCCCATAGCTTCCAGCTACTGTTCATATCAGCATAGAAGCTCGCACGGGTAGTAGTGAGCCCTTCTGTTTTCCAGCTAGTCTAGAGTAGTAGACCTTTCATGAATTGGCTCAATCATCTAGCTTTTTATCGTTACATGAGCCTAAATAATATTTTTAAGACATCAGGCCGAACGGGCACATAAATTGGAGGGTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCACTCAGACTTCTTTAGG</pcr_primer_p1>
		<pcr_primer_p2>TGTCAGAGTGAGAGATTAAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>CGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACA</canonical_amplicon>
		<polymorphic_amplicon>CGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACSTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33234</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>471009</contig_pos>
        <strand>+</strand>
        <context>GTATGAGTTT[A/T]AGCATCTCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTT</left_flank>
        <right_flank>AGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACACGACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAACTACTGTATCTAGTCTAAACACCCGATTAGGAGACTATCTGATTTTTTTGTAACAAGAACCTGTAACATTCATAGCTCTCTGGACGTCTTCGGGAAATATTCACAAGTTCACACCTGCTCAACTTGTCTGAAAATCTGTTTGCTTGTTTCTCGCACGCTCGTTTCTTTACACTATCGCCAGCGCCGGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGGCCTTTGTCTGTATCATAGCAACCGTTTCATCGGACGATCGGCTAGTGCGGCGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACACGACAGCTCCTGTGAGCTGTTTATTGTTTCACGACTCCTCGCTTCCCAACTTTTTCAGCCAAACCACTCACCGCTCACTCTCGTTTCTCTGCGTCCCTGTCTGAGTGCGCACGTACCGTCGTGTGAACTATATGCAAGTGTTGTTCTCACCAGTAGCAGCTCCTGCCCTTGTGTTGTTCATGAGTTTCAAGAGCAACAGTGAGTTTCACTATCTCTGTGTTCTATTAACAAGAAAAGCTCAACTCCGCCCCATAGCTTCCAGCTACTGTTCATATCAGCATAGAAGCTCGCACGGGTAGTAGTGAGCCCTTCTGTTTTCCAGCTAGTCTAGAGTAGTAGACCTTTCATGAATTGGCTCAATCATCTAGCTTTTTATCGTTACATGAGCCTAAATAATATTTTTAAGACATCAGGCCGAACGGGCACATAAATTGGAGGGTGTAACAGTTTGAGGG</canonical>
            <polymorphic>AGAACTACTGTATCTAGTCTAAACACCCGATTAGGAGACTATCTGATTTTTTTGTAACAAGAACCTGTAACATTCATAGCTCTCTGGACGTCTTCGGGAAATATTCACAAGTTCACACCTGCTCAACTTGTCTGAAAATCTGTTTGCTTGTTTCTCGCACGCTCGTTTCTTTACACTATCGCCAGCGCCGGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGGCCTTTGTCTGTATCATAGCAACCGTTTCATCGGACGATCGGCTAGTGCGGCGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTWAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACACGACAGCTCCTGTGAGCTGTTTATTGTTTCACGACTCCTCGCTTCCCAACTTTTTCAGCCAAACCACTCACCGCTCACTCTCGTTTCTCTGCGTCCCTGTCTGAGTGCGCACGTACCGTCGTGTGAACTATATGCAAGTGTTGTTCTCACCAGTAGCAGCTCCTGCCCTTGTGTTGTTCATGAGTTTCAAGAGCAACAGTGAGTTTCACTATCTCTGTGTTCTATTAACAAGAAAAGCTCAACTCCGCCCCATAGCTTCCAGCTACTGTTCATATCAGCATAGAAGCTCGCACGGGTAGTAGTGAGCCCTTCTGTTTTCCAGCTAGTCTAGAGTAGTAGACCTTTCATGAATTGGCTCAATCATCTAGCTTTTTATCGTTACATGAGCCTAAATAATATTTTTAAGACATCAGGCCGAACGGGCACATAAATTGGAGGGTGTAACAGTTTGAGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCACTTCTCTGTGTCCTCTTAT</pcr_primer_p1>
		<pcr_primer_p2>GAGGAGTCGTGAAACAATAAAC</pcr_primer_p2>
		<pcr_amplicon_size>202</pcr_amplicon_size>
		<canonical_amplicon>CTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACACGACAGCTCCTGTGAGCTGTTTATTGTTTCACGACTCCTC</canonical_amplicon>
		<polymorphic_amplicon>CTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTWAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACACGACAGCTCCTGTGAGCTGTTTATTGTTTCACGACTCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33235</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>471198</contig_pos>
        <strand>+</strand>
        <context>GCAAGTGTTG[C/T]TCTCACCAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCCTGTCTGAGTGCGCACGTACCGTCGTGTGAACTATATGCAAGTGTTG</left_flank>
        <right_flank>TCTCACCAGTAGCAGCTCCTGCCCTTGTGTTGTTCATGAGTTTCAAGAGC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGGCCTTTGTCTGTATCATAGCAACCGTTTCATCGGACGATCGGCTAGTGCGGCGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACACGACAGCTCCTGTGAGCTGTTTATTGTTTCACGACTCCTCGCTTCCCAACTTTTTCAGCCAAACCACTCACCGCTCACTCTCGTTTCTCTGCGTCCCTGTCTGAGTGCGCACGTACCGTCGTGTGAACTATATGCAAGTGTTGTTCTCACCAGTAGCAGCTCCTGCCCTTGTGTTGTTCATGAGTTTCAAGAGCAACAGTGAGTTTCACTATCTCTGTGTTCTATTAACAAGAAAAGCTCAACTCCGCCCCATAGCTTCCAGCTACTGTTCATATCAGCATAGAAGCTCGCACGGGTAGTAGTGAGCCCTTCTGTTTTCCAGCTAGTCTAGAGTAGTAGACCTTTCATGAATTGGCTCAATCATCTAGCTTTTTATCGTTACATGAGCCTAAATAATATTTTTAAGACATCAGGCCGAACGGGCACATAAATTGGAGGGTGTAACAGTTTGAGGGGTACAACGGGGCAGTCTTGTGGTGCGAAATCCATCATTCGGGTGTAGGATACTGTCCCATAACTCGCAGCCCAAAAAGGATTTTCCGGGGAAGGCTCAAATGATTTTTATGACGTCATACAAATAGAGCGGTGACTATAACAGTTGGAACTGTTATCCCTATTAGTAATACTCGATTAGAATGCAATTT</canonical>
            <polymorphic>GGCTGAATGGATGGATACACGCGAGCAGGGTTCCAGAAAGGCCTTTGTCTGTATCATAGCAACCGTTTCATCGGACGATCGGCTAGTGCGGCGCACTCAGACTTCTTTAGGTTCTCTACTGTGAGTGCGCGATTTTTTTTGTTTCATGACTCCGTGCTTCCCAACTTTTTCAGCCAAACGGCTCGCCGCTCACCCTCACTTCTCTGTGTCCTCTTATGAGTGCTCACATAATATCGTGTGGACTATATGCAAGTGTTGCTCACAACAGCCGCAGCTCCTGCCTTGTGTTGTTTATGACTTGTATGAGTTTCAGCATCTCTTTATTCTATTCTAGTCCTTAATCTCTCACTCTGACACGACAGCTCCTGTGAGCTGTTTATTGTTTCACGACTCCTCGCTTCCCAACTTTTTCAGCCAAACCACTCACCGCTCACTCTCGTTTCTCTGCGTCCCTGTCTGAGTGCGCACGTACCGTCGTGTGAACTATATGCAAGTGTTGYTCTCACCAGTAGCAGCTCCTGCCCTTGTGTTGTTCATGAGTTTCAAGAGCAACAGTGAGTTTCACTATCTCTGTGTTCTATTAACAAGAAAAGCTCAACTCCGCCCCATAGCTTCCAGCTACTGTTCATATCAGCATAGAAGCTCGCACGGGTAGTAGTGAGCCCTTCTGTTTTCCAGCTAGTCTAGAGTAGTAGACCTTTCATGAATTGGCTCAATCATCTAGCTTTTTATCGTTACATGAGCCTAAATAATATTTTTAAGACATCAGGCCGAACGGGCACATAAATTGGAGGGTGTAACAGTTTGAGGGGTACAACGGGGCAGTCTTGTGGTGCGAAATCCATCATTCGGGTGTAGGATACTGTCCCATAACTCGCAGCCCAAAAAGGATTTTCCGGGGAAGGCTCAAATGATTTTTATGACGTCATACAAATAGAGCGGTGACTATAACAGTTGGAACTGTTATCCCTATTAGTAATACTCGATTAGAATGCAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCCTTAATCTCTCACTCTGACA</pcr_primer_p1>
		<pcr_primer_p2>AGAACACAGAGATAGTGAAACTCA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTCCTTAATCTCTCACTCTGACACGACAGCTCCTGTGAGCTGTTTATTGTTTCACGACTCCTCGCTTCCCAACTTTTTCAGCCAAACCACTCACCGCTCACTCTCGTTTCTCTGCGTCCCTGTCTGAGTGCGCACGTACCGTCGTGTGAACTATATGCAAGTGTTGTTCTCACCAGTAGCAGCTCCTGCCCTTGTGTTGTTCATGAGTTTCAAGAGCAACAGTGAGTTTCACTATCTCTGTGTTCT</canonical_amplicon>
		<polymorphic_amplicon>GTCCTTAATCTCTCACTCTGACACGACAGCTCCTGTGAGCTGTTTATTGTTTCACGACTCCTCGCTTCCCAACTTTTTCAGCCAAACCACTCACCGCTCACTCTCGTTTCTCTGCGTCCCTGTCTGAGTGCGCACGTACCGTCGTGTGAACTATATGCAAGTGTTGYTCTCACCAGTAGCAGCTCCTGCCCTTGTGTTGTTCATGAGTTTCAAGAGCAACAGTGAGTTTCACTATCTCTGTGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33236</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>526829</contig_pos>
        <strand>+</strand>
        <context>ATGATTTGTG[A/G]AATCAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTTCCGTAAACATATTTTACGTCTAGCCCTGCTTCATACATGATTTGTG</left_flank>
        <right_flank>AATCAAAAAATAAATAAAAAAAACTTGAAAAACTCACCGGATAACCATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTCGAAGTGTTGCCTCTTTTTGGAGCTTTGAGAATTGGCACGTCCTGTAAGAAAAATGAACTAATGATGTCTAATTTTTTCATATTTTGTAGCAGGGCTGGGATTTACCGTATTTCCTTTAAGCCTATGGGCTTCAATAAGATTTTCCGGCCATTTCGACTTTATACTATTACCTAGTCTTTTTTTTTAGTCTGGGGCTCGGCTGTCGAGTTTATAATAAATTTGAAAATTTTGGGGGAGGGGGGGGGGGGGGTGTAAAACAGACCTAGTTTAAAAAACTAGCACATGCAAAATTATTTGAAAGATCCTAGTTTTCTAGCTGTTCGAAATTTTCGAACAGCACCTCTTTTTATCCCGTTTTTGTAAATCGTGAAAAACAAATGTTTAGCGAGTTTCGCGGAATTACGAATTTACAGAATTTCCGATCTATCAATTTTACGTTTCACGGGTTCCGTAAACATATTTTACGTCTAGCCCTGCTTCATACATGATTTGTGAAATCAAAAAATAAATAAAAAAAACTTGAAAAACTCACCGGATAACCATCTCTCCTCAGACGATTTCCAAGAGAATTCAGCACTTTTCGTTTCCGGAAGGATTTGAACGAAGACTGCTCCCCCAAGTGTCGAGATAGTTCTTCGAACAACATGAAACCCAAGGCTGGTGAGTATTCTGAAAAATAAAAATTAGGGTTGCACTTGAATTATGCACAAGTTTTACCTTGACCCTCGTATCCATCGTAGAAGAATTTCTCAACGTAGTTGAACAAGAGAATCCAGTATCGGCCTGTCTTTTCCGAATTTTTGCTAGACATTTTTGCTATTCTGAAAACAAAATTTTTAGACTTTCGAAATGAATTATATCAAATCTTACCTCCAAGCGAGTGGAAAGTTCTCGATCGTATCAAAGTTTCCTTTAATTGCAATTGTTTTCTCTCGAGCAAAAAAAAACCAGAGACATCCAGTCGGAAGAACTGCCATTTGACCGGCACTAATTTC</canonical>
            <polymorphic>CTTTCGAAGTGTTGCCTCTTTTTGGAGCTTTGAGAATTGGCACGTCCTGTAAGAAAAATGAACTAATGATGTCTAATTTTTTCATATTTTGTAGCAGGGCTGGGATTTACCGTATTTCCTTTAAGCCTATGGGCTTCAATAAGATTTTCCGGCCATTTCGACTTTATACTATTACCTAGTCTTTTTTTTTAGTCTGGGGCTCGGCTGTCGAGTTTATAATAAATTTGAAAATTTTGGGGGAGGGGGGGGGGGGGGTGTAAAACAGACCTAGTTTAAAAAACTAGCACATGCAAAATTATTTGAAAGATCCTAGTTTTCTAGCTGTTCGAAATTTTCGAACAGCACCTCTTTTTATCCCGTTTTTGTAAATCGTGAAAAACAAATGTTTAGCGAGTTTCGCGGAATTACGAATTTACAGAATTTCCGATCTATCAATTTTACGTTTCACGGGTTCCGTAAACATATTTTACGTCTAGCCCTGCTTCATACATGATTTGTGRAATCAAAAAATAAATAAAAAAAACTTGAAAAACTCACCGGATAACCATCTCTCCTCAGACGATTTCCAAGAGAATTCAGCACTTTTCGTTTCCGGAAGGATTTGAACGAAGACTGCTCCCCCAAGTGTCGAGATAGTTCTTCGAACAACATGAAACCCAAGGCTGGTGAGTATTCTGAAAAATAAAAATTAGGGTTGCACTTGAATTATGCACAAGTTTTACCTTGACCCTCGTATCCATCGTAGAAGAATTTCTCAACGTAGTTGAACAAGAGAATCCAGTATCGGCCTGTCTTTTCCGAATTTTTGCTAGACATTTTTGCTATTCTGAAAACAAAATTTTTAGACTTTCGAAATGAATTATATCAAATCTTACCTCCAAGCGAGTGGAAAGTTCTCGATCGTATCAAAGTTTCCTTTAATTGCAATTGTTTTCTCTCGAGCAAAAAAAAACCAGAGACATCCAGTCGGAAGAACTGCCATTTGACCGGCACTAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGAATTACGAATTTACAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TTCGAAGAACTATCTCGACACT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CGGAATTACGAATTTACAGAATTTCCGATCTATCAATTTTACGTTTCACGGGTTCCGTAAACATATTTTACGTCTAGCCCTGCTTCATACATGATTTGTGAAATCAAAAAATAAATAAAAAAAACTTGAAAAACTCACCGGATAACCATCTCTCCTCAGACGATTTCCAAGAGAATTCAGCACTTTTCGTTTCCGGAAGGATTTGAACGAAGACTGCTCCCCCAAGTGTCGAGATAGTTCTTCGAA</canonical_amplicon>
		<polymorphic_amplicon>CGGAATTACGAATTTACAGAATTTCCGATCTATCAATTTTACGTTTCACGGGTTCCGTAAACATATTTTACGTCTAGCCCTGCTTCATACATGATTTGTGRAATCAAAAAATAAATAAAAAAAACTTGAAAAACTCACCGGATAACCATCTCTCCTCAGACGATTTCCAAGAGAATTCAGCACTTTTCGTTTCCGGAAGGATTTGAACGAAGACTGCTCCCCCAAGTGTCGAGATAGTTCTTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33237</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>542828</contig_pos>
        <strand>+</strand>
        <context>aaaaaaaatt[A/G]aataaGATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTCTAACGACATTCTAAAAATCATTCAATTTCAAATTTAAAAAAAATT</left_flank>
        <right_flank>AATAAGATTCGAGAAACAAAAACCGTGCAAATCCCAAATTAGTGAATGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAGATTTTCCAAAAAAATTTCGGTTTTGCCATATATGTTTTACGAGTTCTTATTCGTGCGAGTCCTTATTTGTAGCAGTTCTCATTTTTCCGAGTTCTCATTCCTGGTACCACCATTCTGTTTCTCCTTTCATGTCTTCACGTAGTCTATTAGATCAATCGATATTTGTTGGCTCTGTATTTTTCTATCTATCTGCTTTTCATTACATTCCCACATTAACACAAAAAGAATCATTTCAGAATCCGAAAACGACAATGCCCGGAAAAGTCACCATCGAAGTCAAAGACGTCGGAAATTATTATGCGGACTGGGGCCGTGTGGACTATATATCTGATTTGGCATGGAAACAACGTAAGTGTGAAGAATAATTGTATATTTTAGTAAAATTAACAAGAAATCTCCTATAACGAAATTAGAATCAGCATCTGTCCAGAAAGTAGCAACATCAATTTCTAACGACATTCTAAAAATCATTCAATTTCAAATTTAAAAAAAATTAAATAAGATTCGAGAAACAAAAACCGTGCAAATCCCAAATTAGTGAATGATCTCGAGAATACTAATTATAACTATTTTTCAGGTGATTGTGTTCTGGCGCTCGGCAAAAACGAATTCCATATGAAATACACCTCCTTCTTCCTGAAGGCTCGTAAAGTGAACCTAACAAAACTCGACTTCAGAGATAAAGAGCTCTGGGAGGAAAAGTTAGAGGAGATGAAAGACAAACGAGTGGCCATGATTGCAACAGATTTATTCTTGGAATCAAAGATGCGAGTTCCGAAAAATGTAAGTTTTGTTGGAAAATTGTTTTTTAGATGTCTAAAATCATTTAAAATGATTTTGAAACTATTTCGAATTCTTTTCAGGTTATCGTCTATTGGCCACCAGAGGATCTGAACGATATATCGAAAATTTTCGAGCTCATCTACAAGACAGCTGAAGAGAAGAGAAGAACTTACAAAGTTACATTCTTTGTTTCTGTCAAGGACGATGCTGATT</canonical>
            <polymorphic>CAAGATTTTCCAAAAAAATTTCGGTTTTGCCATATATGTTTTACGAGTTCTTATTCGTGCGAGTCCTTATTTGTAGCAGTTCTCATTTTTCCGAGTTCTCATTCCTGGTACCACCATTCTGTTTCTCCTTTCATGTCTTCACGTAGTCTATTAGATCAATCGATATTTGTTGGCTCTGTATTTTTCTATCTATCTGCTTTTCATTACATTCCCACATTAACACAAAAAGAATCATTTCAGAATCCGAAAACGACAATGCCCGGAAAAGTCACCATCGAAGTCAAAGACGTCGGAAATTATTATGCGGACTGGGGCCGTGTGGACTATATATCTGATTTGGCATGGAAACAACGTAAGTGTGAAGAATAATTGTATATTTTAGTAAAATTAACAAGAAATCTCCTATAACGAAATTAGAATCAGCATCTGTCCAGAAAGTAGCAACATCAATTTCTAACGACATTCTAAAAATCATTCAATTTCAAATTTAAAAAAAATTRAATAAGATTCGAGAAACAAAAACCGTGCAAATCCCAAATTAGTGAATGATCTCGAGAATACTAATTATAACTATTTTTCAGGTGATTGTGTTCTGGCGCTCGGCAAAAACGAATTCCATATGAAATACACCTCCTTCTTCCTGAAGGCTCGTAAAGTGAACCTAACAAAACTCGACTTCAGAGATAAAGAGCTCTGGGAGGAAAAGTTAGAGGAGATGAAAGACAAACGAGTGGCCATGATTGCAACAGATTTATTCTTGGAATCAAAGATGCGAGTTCCGAAAAATGTAAGTTTTGTTGGAAAATTGTTTTTTAGATGTCTAAAATCATTTAAAATGATTTTGAAACTATTTCGAATTCTTTTCAGGTTATCGTCTATTGGCCACCAGAGGATCTGAACGATATATCGAAAATTTTCGAGCTCATCTACAAGACAGCTGAAGAGAAGAGAAGAACTTACAAAGTTACATTCTTTGTTTCTGTCAAGGACGATGCTGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>333 217 171 169 100 10</canonical_bands>
                <polymorphic_bands>343 217 171 169 100</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAACAACGTAAGTGTGAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>AGAACACAATCACCTGAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAACAACGTAAGTGTGAAGAATAATTGTATATTTTAGTAAAATTAACAAGAAATCTCCTATAACGAAATTAGAATCAGCATCTGTCCAGAAAGTAGCAACATCAATTTCTAACGACATTCTAAAAATCATTCAATTTCAAATTTAAAAAAAATTAAATAAGATTCGAGAAACAAAAACCGTGCAAATCCCAAATTAGTGAATGATCTCGAGAATACTAATTATAACTATTTTTCAGGTGATTGTGTTCT</canonical_amplicon>
		<polymorphic_amplicon>GAAACAACGTAAGTGTGAAGAATAATTGTATATTTTAGTAAAATTAACAAGAAATCTCCTATAACGAAATTAGAATCAGCATCTGTCCAGAAAGTAGCAACATCAATTTCTAACGACATTCTAAAAATCATTCAATTTCAAATTTAAAAAAAATTRAATAAGATTCGAGAAACAAAAACCGTGCAAATCCCAAATTAGTGAATGATCTCGAGAATACTAATTATAACTATTTTTCAGGTGATTGTGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33238</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>542859</contig_pos>
        <strand></strand>
        <context>AACCGTGCAA[A/G]TCCCAAATTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAAATTTAAAAAAAATTAAATAAGATTCGAGAAACAAAAACCGTGCAA</left_flank>
        <right_flank>TCCCAAATTAGTGAATGATCTCGAGAATACTAATTATAACTATTTTTCAG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATATGTTTTACGAGTTCTTATTCGTGCGAGTCCTTATTTGTAGCAGTTCTCATTTTTCCGAGTTCTCATTCCTGGTACCACCATTCTGTTTCTCCTTTCATGTCTTCACGTAGTCTATTAGATCAATCGATATTTGTTGGCTCTGTATTTTTCTATCTATCTGCTTTTCATTACATTCCCACATTAACACAAAAAGAATCATTTCAGAATCCGAAAACGACAATGCCCGGAAAAGTCACCATCGAAGTCAAAGACGTCGGAAATTATTATGCGGACTGGGGCCGTGTGGACTATATATCTGATTTGGCATGGAAACAACGTAAGTGTGAAGAATAATTGTATATTTTAGTAAAATTAACAAGAAATCTCCTATAACGAAATTAGAATCAGCATCTGTCCAGAAAGTAGCAACATCAATTTCTAACGACATTCTAAAAATCATTCAATTTCAAATTTAAAAAAAATTAAATAAGATTCGAGAAACAAAAACCGTGCAAATCCCAAATTAGTGAATGATCTCGAGAATACTAATTATAACTATTTTTCAGGTGATTGTGTTCTGGCGCTCGGCAAAAACGAATTCCATATGAAATACACCTCCTTCTTCCTGAAGGCTCGTAAAGTGAACCTAACAAAACTCGACTTCAGAGATAAAGAGCTCTGGGAGGAAAAGTTAGAGGAGATGAAAGACAAACGAGTGGCCATGATTGCAACAGATTTATTCTTGGAATCAAAGATGCGAGTTCCGAAAAATGTAAGTTTTGTTGGAAAATTGTTTTTTAGATGTCTAAAATCATTTAAAATGATTTTGAAACTATTTCGAATTCTTTTCAGGTTATCGTCTATTGGCCACCAGAGGATCTGAACGATATATCGAAAATTTTCGAGCTCATCTACAAGACAGCTGAAGAGAAGAGAAGAACTTACAAAGTTACATTCTTTGTTTCTGTCAAGGACGATGCTGATTACAAGACTGCGCTGATTGAAGAGATGGAAAA</canonical>
            <polymorphic>ATATATGTTTTACGAGTTCTTATTCGTGCGAGTCCTTATTTGTAGCAGTTCTCATTTTTCCGAGTTCTCATTCCTGGTACCACCATTCTGTTTCTCCTTTCATGTCTTCACGTAGTCTATTAGATCAATCGATATTTGTTGGCTCTGTATTTTTCTATCTATCTGCTTTTCATTACATTCCCACATTAACACAAAAAGAATCATTTCAGAATCCGAAAACGACAATGCCCGGAAAAGTCACCATCGAAGTCAAAGACGTCGGAAATTATTATGCGGACTGGGGCCGTGTGGACTATATATCTGATTTGGCATGGAAACAACGTAAGTGTGAAGAATAATTGTATATTTTAGTAAAATTAACAAGAAATCTCCTATAACGAAATTAGAATCAGCATCTGTCCAGAAAGTAGCAACATCAATTTCTAACGACATTCTAAAAATCATTCAATTTCAAATTTAAAAAAAATTAAATAAGATTCGAGAAACAAAAACCGTGCAARTCCCAAATTAGTGAATGATCTCGAGAATACTAATTATAACTATTTTTCAGGTGATTGTGTTCTGGCGCTCGGCAAAAACGAATTCCATATGAAATACACCTCCTTCTTCCTGAAGGCTCGTAAAGTGAACCTAACAAAACTCGACTTCAGAGATAAAGAGCTCTGGGAGGAAAAGTTAGAGGAGATGAAAGACAAACGAGTGGCCATGATTGCAACAGATTTATTCTTGGAATCAAAGATGCGAGTTCCGAAAAATGTAAGTTTTGTTGGAAAATTGTTTTTTAGATGTCTAAAATCATTTAAAATGATTTTGAAACTATTTCGAATTCTTTTCAGGTTATCGTCTATTGGCCACCAGAGGATCTGAACGATATATCGAAAATTTTCGAGCTCATCTACAAGACAGCTGAAGAGAAGAGAAGAACTTACAAAGTTACATTCTTTGTTTCTGTCAAGGACGATGCTGATTACAAGACTGCGCTGATTGAAGAGATGGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACAACGTAAGTGTGAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>AGAACACAATCACCTGAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAACAACGTAAGTGTGAAGAATAATTGTATATTTTAGTAAAATTAACAAGAAATCTCCTATAACGAAATTAGAATCAGCATCTGTCCAGAAAGTAGCAACATCAATTTCTAACGACATTCTAAAAATCATTCAATTTCAAATTTAAAAAAAATTAAATAAGATTCGAGAAACAAAAACCGTGCAAATCCCAAATTAGTGAATGATCTCGAGAATACTAATTATAACTATTTTTCAGGTGATTGTGTTCT</canonical_amplicon>
		<polymorphic_amplicon>GAAACAACGTAAGTGTGAAGAATAATTGTATATTTTAGTAAAATTAACAAGAAATCTCCTATAACGAAATTAGAATCAGCATCTGTCCAGAAAGTAGCAACATCAATTTCTAACGACATTCTAAAAATCATTCAATTTCAAATTTAAAAAAAATTAAATAAGATTCGAGAAACAAAAACCGTGCAARTCCCAAATTAGTGAATGATCTCGAGAATACTAATTATAACTATTTTTCAGGTGATTGTGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33239</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>542895</contig_pos>
        <strand>+</strand>
        <context>AATACTAATT[A/C]TAACTATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAAAAACCGTGCAAATCCCAAATTAGTGAATGATCTCGAGAATACTAATT</left_flank>
        <right_flank>TAACTATTTTTCAGGTGATTGTGTTCTGGCGCTCGGCAAAAACGAATTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTGTAGCAGTTCTCATTTTTCCGAGTTCTCATTCCTGGTACCACCATTCTGTTTCTCCTTTCATGTCTTCACGTAGTCTATTAGATCAATCGATATTTGTTGGCTCTGTATTTTTCTATCTATCTGCTTTTCATTACATTCCCACATTAACACAAAAAGAATCATTTCAGAATCCGAAAACGACAATGCCCGGAAAAGTCACCATCGAAGTCAAAGACGTCGGAAATTATTATGCGGACTGGGGCCGTGTGGACTATATATCTGATTTGGCATGGAAACAACGTAAGTGTGAAGAATAATTGTATATTTTAGTAAAATTAACAAGAAATCTCCTATAACGAAATTAGAATCAGCATCTGTCCAGAAAGTAGCAACATCAATTTCTAACGACATTCTAAAAATCATTCAATTTCAAATTTAAAAAAAATTAAATAAGATTCGAGAAACAAAAACCGTGCAAATCCCAAATTAGTGAATGATCTCGAGAATACTAATTATAACTATTTTTCAGGTGATTGTGTTCTGGCGCTCGGCAAAAACGAATTCCATATGAAATACACCTCCTTCTTCCTGAAGGCTCGTAAAGTGAACCTAACAAAACTCGACTTCAGAGATAAAGAGCTCTGGGAGGAAAAGTTAGAGGAGATGAAAGACAAACGAGTGGCCATGATTGCAACAGATTTATTCTTGGAATCAAAGATGCGAGTTCCGAAAAATGTAAGTTTTGTTGGAAAATTGTTTTTTAGATGTCTAAAATCATTTAAAATGATTTTGAAACTATTTCGAATTCTTTTCAGGTTATCGTCTATTGGCCACCAGAGGATCTGAACGATATATCGAAAATTTTCGAGCTCATCTACAAGACAGCTGAAGAGAAGAGAAGAACTTACAAAGTTACATTCTTTGTTTCTGTCAAGGACGATGCTGATTACAAGACTGCGCTGATTGAAGAGATGGAAAAGAGAAAGGTCAGGGTACCTAGCTGGCTTAGAGAAAG</canonical>
            <polymorphic>TATTTGTAGCAGTTCTCATTTTTCCGAGTTCTCATTCCTGGTACCACCATTCTGTTTCTCCTTTCATGTCTTCACGTAGTCTATTAGATCAATCGATATTTGTTGGCTCTGTATTTTTCTATCTATCTGCTTTTCATTACATTCCCACATTAACACAAAAAGAATCATTTCAGAATCCGAAAACGACAATGCCCGGAAAAGTCACCATCGAAGTCAAAGACGTCGGAAATTATTATGCGGACTGGGGCCGTGTGGACTATATATCTGATTTGGCATGGAAACAACGTAAGTGTGAAGAATAATTGTATATTTTAGTAAAATTAACAAGAAATCTCCTATAACGAAATTAGAATCAGCATCTGTCCAGAAAGTAGCAACATCAATTTCTAACGACATTCTAAAAATCATTCAATTTCAAATTTAAAAAAAATTAAATAAGATTCGAGAAACAAAAACCGTGCAAATCCCAAATTAGTGAATGATCTCGAGAATACTAATTMTAACTATTTTTCAGGTGATTGTGTTCTGGCGCTCGGCAAAAACGAATTCCATATGAAATACACCTCCTTCTTCCTGAAGGCTCGTAAAGTGAACCTAACAAAACTCGACTTCAGAGATAAAGAGCTCTGGGAGGAAAAGTTAGAGGAGATGAAAGACAAACGAGTGGCCATGATTGCAACAGATTTATTCTTGGAATCAAAGATGCGAGTTCCGAAAAATGTAAGTTTTGTTGGAAAATTGTTTTTTAGATGTCTAAAATCATTTAAAATGATTTTGAAACTATTTCGAATTCTTTTCAGGTTATCGTCTATTGGCCACCAGAGGATCTGAACGATATATCGAAAATTTTCGAGCTCATCTACAAGACAGCTGAAGAGAAGAGAAGAACTTACAAAGTTACATTCTTTGTTTCTGTCAAGGACGATGCTGATTACAAGACTGCGCTGATTGAAGAGATGGAAAAGAGAAAGGTCAGGGTACCTAGCTGGCTTAGAGAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTAGCAACATCAATTTCTAACG</pcr_primer_p1>
		<pcr_primer_p2>TATCTCTGAAGTCGAGTTTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTAGCAACATCAATTTCTAACGACATTCTAAAAATCATTCAATTTCAAATTTAAAAAAAATTAAATAAGATTCGAGAAACAAAAACCGTGCAAATCCCAAATTAGTGAATGATCTCGAGAATACTAATTATAACTATTTTTCAGGTGATTGTGTTCTGGCGCTCGGCAAAAACGAATTCCATATGAAATACACCTCCTTCTTCCTGAAGGCTCGTAAAGTGAACCTAACAAAACTCGACTTCAGAGATA</canonical_amplicon>
		<polymorphic_amplicon>AGTAGCAACATCAATTTCTAACGACATTCTAAAAATCATTCAATTTCAAATTTAAAAAAAATTAAATAAGATTCGAGAAACAAAAACCGTGCAAATCCCAAATTAGTGAATGATCTCGAGAATACTAATTMTAACTATTTTTCAGGTGATTGTGTTCTGGCGCTCGGCAAAAACGAATTCCATATGAAATACACCTCCTTCTTCCTGAAGGCTCGTAAAGTGAACCTAACAAAACTCGACTTCAGAGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33240</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>542953</contig_pos>
        <strand>+</strand>
        <context>TCCATATGAA[A/G]TACACCTCCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCAGGTGATTGTGTTCTGGCGCTCGGCAAAAACGAATTCCATATGAA</left_flank>
        <right_flank>TACACCTCCTTCTTCCTGAAGGCTCGTAAAGTGAACCTAACAAAACTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTTTCATGTCTTCACGTAGTCTATTAGATCAATCGATATTTGTTGGCTCTGTATTTTTCTATCTATCTGCTTTTCATTACATTCCCACATTAACACAAAAAGAATCATTTCAGAATCCGAAAACGACAATGCCCGGAAAAGTCACCATCGAAGTCAAAGACGTCGGAAATTATTATGCGGACTGGGGCCGTGTGGACTATATATCTGATTTGGCATGGAAACAACGTAAGTGTGAAGAATAATTGTATATTTTAGTAAAATTAACAAGAAATCTCCTATAACGAAATTAGAATCAGCATCTGTCCAGAAAGTAGCAACATCAATTTCTAACGACATTCTAAAAATCATTCAATTTCAAATTTAAAAAAAATTAAATAAGATTCGAGAAACAAAAACCGTGCAAATCCCAAATTAGTGAATGATCTCGAGAATACTAATTATAACTATTTTTCAGGTGATTGTGTTCTGGCGCTCGGCAAAAACGAATTCCATATGAAATACACCTCCTTCTTCCTGAAGGCTCGTAAAGTGAACCTAACAAAACTCGACTTCAGAGATAAAGAGCTCTGGGAGGAAAAGTTAGAGGAGATGAAAGACAAACGAGTGGCCATGATTGCAACAGATTTATTCTTGGAATCAAAGATGCGAGTTCCGAAAAATGTAAGTTTTGTTGGAAAATTGTTTTTTAGATGTCTAAAATCATTTAAAATGATTTTGAAACTATTTCGAATTCTTTTCAGGTTATCGTCTATTGGCCACCAGAGGATCTGAACGATATATCGAAAATTTTCGAGCTCATCTACAAGACAGCTGAAGAGAAGAGAAGAACTTACAAAGTTACATTCTTTGTTTCTGTCAAGGACGATGCTGATTACAAGACTGCGCTGATTGAAGAGATGGAAAAGAGAAAGGTCAGGGTACCTAGCTGGCTTAGAGAAAGCCTTGTAAAGTGAGTTCCTTGAAAACACTAGTTGAATTAACTTTTTAGTAATTTTCAG</canonical>
            <polymorphic>TCCTTTCATGTCTTCACGTAGTCTATTAGATCAATCGATATTTGTTGGCTCTGTATTTTTCTATCTATCTGCTTTTCATTACATTCCCACATTAACACAAAAAGAATCATTTCAGAATCCGAAAACGACAATGCCCGGAAAAGTCACCATCGAAGTCAAAGACGTCGGAAATTATTATGCGGACTGGGGCCGTGTGGACTATATATCTGATTTGGCATGGAAACAACGTAAGTGTGAAGAATAATTGTATATTTTAGTAAAATTAACAAGAAATCTCCTATAACGAAATTAGAATCAGCATCTGTCCAGAAAGTAGCAACATCAATTTCTAACGACATTCTAAAAATCATTCAATTTCAAATTTAAAAAAAATTAAATAAGATTCGAGAAACAAAAACCGTGCAAATCCCAAATTAGTGAATGATCTCGAGAATACTAATTATAACTATTTTTCAGGTGATTGTGTTCTGGCGCTCGGCAAAAACGAATTCCATATGAARTACACCTCCTTCTTCCTGAAGGCTCGTAAAGTGAACCTAACAAAACTCGACTTCAGAGATAAAGAGCTCTGGGAGGAAAAGTTAGAGGAGATGAAAGACAAACGAGTGGCCATGATTGCAACAGATTTATTCTTGGAATCAAAGATGCGAGTTCCGAAAAATGTAAGTTTTGTTGGAAAATTGTTTTTTAGATGTCTAAAATCATTTAAAATGATTTTGAAACTATTTCGAATTCTTTTCAGGTTATCGTCTATTGGCCACCAGAGGATCTGAACGATATATCGAAAATTTTCGAGCTCATCTACAAGACAGCTGAAGAGAAGAGAAGAACTTACAAAGTTACATTCTTTGTTTCTGTCAAGGACGATGCTGATTACAAGACTGCGCTGATTGAAGAGATGGAAAAGAGAAAGGTCAGGGTACCTAGCTGGCTTAGAGAAAGCCTTGTAAAGTGAGTTCCTTGAAAACACTAGTTGAATTAACTTTTTAGTAATTTTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTAGCAACATCAATTTCTAACG</pcr_primer_p1>
		<pcr_primer_p2>TATCTCTGAAGTCGAGTTTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTAGCAACATCAATTTCTAACGACATTCTAAAAATCATTCAATTTCAAATTTAAAAAAAATTAAATAAGATTCGAGAAACAAAAACCGTGCAAATCCCAAATTAGTGAATGATCTCGAGAATACTAATTATAACTATTTTTCAGGTGATTGTGTTCTGGCGCTCGGCAAAAACGAATTCCATATGAAATACACCTCCTTCTTCCTGAAGGCTCGTAAAGTGAACCTAACAAAACTCGACTTCAGAGATA</canonical_amplicon>
		<polymorphic_amplicon>AGTAGCAACATCAATTTCTAACGACATTCTAAAAATCATTCAATTTCAAATTTAAAAAAAATTAAATAAGATTCGAGAAACAAAAACCGTGCAAATCCCAAATTAGTGAATGATCTCGAGAATACTAATTATAACTATTTTTCAGGTGATTGTGTTCTGGCGCTCGGCAAAAACGAATTCCATATGAARTACACCTCCTTCTTCCTGAAGGCTCGTAAAGTGAACCTAACAAAACTCGACTTCAGAGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33241</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>542968</contig_pos>
        <strand>+</strand>
        <context>CCTCCTTCTT[C/T]CTGAAGGCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTCTGGCGCTCGGCAAAAACGAATTCCATATGAAATACACCTCCTTCTT</left_flank>
        <right_flank>CTGAAGGCTCGTAAAGTGAACCTAACAAAACTCGACTTCAGAGATAAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGTAGTCTATTAGATCAATCGATATTTGTTGGCTCTGTATTTTTCTATCTATCTGCTTTTCATTACATTCCCACATTAACACAAAAAGAATCATTTCAGAATCCGAAAACGACAATGCCCGGAAAAGTCACCATCGAAGTCAAAGACGTCGGAAATTATTATGCGGACTGGGGCCGTGTGGACTATATATCTGATTTGGCATGGAAACAACGTAAGTGTGAAGAATAATTGTATATTTTAGTAAAATTAACAAGAAATCTCCTATAACGAAATTAGAATCAGCATCTGTCCAGAAAGTAGCAACATCAATTTCTAACGACATTCTAAAAATCATTCAATTTCAAATTTAAAAAAAATTAAATAAGATTCGAGAAACAAAAACCGTGCAAATCCCAAATTAGTGAATGATCTCGAGAATACTAATTATAACTATTTTTCAGGTGATTGTGTTCTGGCGCTCGGCAAAAACGAATTCCATATGAAATACACCTCCTTCTTCCTGAAGGCTCGTAAAGTGAACCTAACAAAACTCGACTTCAGAGATAAAGAGCTCTGGGAGGAAAAGTTAGAGGAGATGAAAGACAAACGAGTGGCCATGATTGCAACAGATTTATTCTTGGAATCAAAGATGCGAGTTCCGAAAAATGTAAGTTTTGTTGGAAAATTGTTTTTTAGATGTCTAAAATCATTTAAAATGATTTTGAAACTATTTCGAATTCTTTTCAGGTTATCGTCTATTGGCCACCAGAGGATCTGAACGATATATCGAAAATTTTCGAGCTCATCTACAAGACAGCTGAAGAGAAGAGAAGAACTTACAAAGTTACATTCTTTGTTTCTGTCAAGGACGATGCTGATTACAAGACTGCGCTGATTGAAGAGATGGAAAAGAGAAAGGTCAGGGTACCTAGCTGGCTTAGAGAAAGCCTTGTAAAGTGAGTTCCTTGAAAACACTAGTTGAATTAACTTTTTAGTAATTTTCAGGAGCCTTGAACCAAC</canonical>
            <polymorphic>ACGTAGTCTATTAGATCAATCGATATTTGTTGGCTCTGTATTTTTCTATCTATCTGCTTTTCATTACATTCCCACATTAACACAAAAAGAATCATTTCAGAATCCGAAAACGACAATGCCCGGAAAAGTCACCATCGAAGTCAAAGACGTCGGAAATTATTATGCGGACTGGGGCCGTGTGGACTATATATCTGATTTGGCATGGAAACAACGTAAGTGTGAAGAATAATTGTATATTTTAGTAAAATTAACAAGAAATCTCCTATAACGAAATTAGAATCAGCATCTGTCCAGAAAGTAGCAACATCAATTTCTAACGACATTCTAAAAATCATTCAATTTCAAATTTAAAAAAAATTAAATAAGATTCGAGAAACAAAAACCGTGCAAATCCCAAATTAGTGAATGATCTCGAGAATACTAATTATAACTATTTTTCAGGTGATTGTGTTCTGGCGCTCGGCAAAAACGAATTCCATATGAAATACACCTCCTTCTTYCTGAAGGCTCGTAAAGTGAACCTAACAAAACTCGACTTCAGAGATAAAGAGCTCTGGGAGGAAAAGTTAGAGGAGATGAAAGACAAACGAGTGGCCATGATTGCAACAGATTTATTCTTGGAATCAAAGATGCGAGTTCCGAAAAATGTAAGTTTTGTTGGAAAATTGTTTTTTAGATGTCTAAAATCATTTAAAATGATTTTGAAACTATTTCGAATTCTTTTCAGGTTATCGTCTATTGGCCACCAGAGGATCTGAACGATATATCGAAAATTTTCGAGCTCATCTACAAGACAGCTGAAGAGAAGAGAAGAACTTACAAAGTTACATTCTTTGTTTCTGTCAAGGACGATGCTGATTACAAGACTGCGCTGATTGAAGAGATGGAAAAGAGAAAGGTCAGGGTACCTAGCTGGCTTAGAGAAAGCCTTGTAAAGTGAGTTCCTTGAAAACACTAGTTGAATTAACTTTTTAGTAATTTTCAGGAGCCTTGAACCAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>483 291 87 79 41 17 2</canonical_bands>
                <polymorphic_bands>570 291 79 41 17 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATTTCTAACGACATTCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCAGAGCTCTTTATCTCTGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAATTTCTAACGACATTCTAAAAATCATTCAATTTCAAATTTAAAAAAAATTAAATAAGATTCGAGAAACAAAAACCGTGCAAATCCCAAATTAGTGAATGATCTCGAGAATACTAATTATAACTATTTTTCAGGTGATTGTGTTCTGGCGCTCGGCAAAAACGAATTCCATATGAAATACACCTCCTTCTTCCTGAAGGCTCGTAAAGTGAACCTAACAAAACTCGACTTCAGAGATAAAGAGCTCTGG</canonical_amplicon>
		<polymorphic_amplicon>CAATTTCTAACGACATTCTAAAAATCATTCAATTTCAAATTTAAAAAAAATTAAATAAGATTCGAGAAACAAAAACCGTGCAAATCCCAAATTAGTGAATGATCTCGAGAATACTAATTATAACTATTTTTCAGGTGATTGTGTTCTGGCGCTCGGCAAAAACGAATTCCATATGAAATACACCTCCTTCTTYCTGAAGGCTCGTAAAGTGAACCTAACAAAACTCGACTTCAGAGATAAAGAGCTCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33242</snp_id>
        <super_contig>c008000641.Contig3</super_contig>
        <contig_pos>543031</contig_pos>
        <strand>+</strand>
        <context>TCTGGGAGGA[A/C]AAGTTAGAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAGTGAACCTAACAAAACTCGACTTCAGAGATAAAGAGCTCTGGGAGGA</left_flank>
        <right_flank>AAGTTAGAGGAGATGAAAGACAAACGAGTGGCCATGATTGCAACAGATTT</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTACATTCCCACATTAACACAAAAAGAATCATTTCAGAATCCGAAAACGACAATGCCCGGAAAAGTCACCATCGAAGTCAAAGACGTCGGAAATTATTATGCGGACTGGGGCCGTGTGGACTATATATCTGATTTGGCATGGAAACAACGTAAGTGTGAAGAATAATTGTATATTTTAGTAAAATTAACAAGAAATCTCCTATAACGAAATTAGAATCAGCATCTGTCCAGAAAGTAGCAACATCAATTTCTAACGACATTCTAAAAATCATTCAATTTCAAATTTAAAAAAAATTAAATAAGATTCGAGAAACAAAAACCGTGCAAATCCCAAATTAGTGAATGATCTCGAGAATACTAATTATAACTATTTTTCAGGTGATTGTGTTCTGGCGCTCGGCAAAAACGAATTCCATATGAAATACACCTCCTTCTTCCTGAAGGCTCGTAAAGTGAACCTAACAAAACTCGACTTCAGAGATAAAGAGCTCTGGGAGGAAAAGTTAGAGGAGATGAAAGACAAACGAGTGGCCATGATTGCAACAGATTTATTCTTGGAATCAAAGATGCGAGTTCCGAAAAATGTAAGTTTTGTTGGAAAATTGTTTTTTAGATGTCTAAAATCATTTAAAATGATTTTGAAACTATTTCGAATTCTTTTCAGGTTATCGTCTATTGGCCACCAGAGGATCTGAACGATATATCGAAAATTTTCGAGCTCATCTACAAGACAGCTGAAGAGAAGAGAAGAACTTACAAAGTTACATTCTTTGTTTCTGTCAAGGACGATGCTGATTACAAGACTGCGCTGATTGAAGAGATGGAAAAGAGAAAGGTCAGGGTACCTAGCTGGCTTAGAGAAAGCCTTGTAAAGTGAGTTCCTTGAAAACACTAGTTGAATTAACTTTTTAGTAATTTTCAGGAGCCTTGAACCAACAAAGAAGTCTGAAGATGAAAAATGCGAACGCACGTCTGTGGACTCGGAACTCGATTCCGCATC</canonical>
            <polymorphic>TTACATTCCCACATTAACACAAAAAGAATCATTTCAGAATCCGAAAACGACAATGCCCGGAAAAGTCACCATCGAAGTCAAAGACGTCGGAAATTATTATGCGGACTGGGGCCGTGTGGACTATATATCTGATTTGGCATGGAAACAACGTAAGTGTGAAGAATAATTGTATATTTTAGTAAAATTAACAAGAAATCTCCTATAACGAAATTAGAATCAGCATCTGTCCAGAAAGTAGCAACATCAATTTCTAACGACATTCTAAAAATCATTCAATTTCAAATTTAAAAAAAATTAAATAAGATTCGAGAAACAAAAACCGTGCAAATCCCAAATTAGTGAATGATCTCGAGAATACTAATTATAACTATTTTTCAGGTGATTGTGTTCTGGCGCTCGGCAAAAACGAATTCCATATGAAATACACCTCCTTCTTCCTGAAGGCTCGTAAAGTGAACCTAACAAAACTCGACTTCAGAGATAAAGAGCTCTGGGAGGAMAAGTTAGAGGAGATGAAAGACAAACGAGTGGCCATGATTGCAACAGATTTATTCTTGGAATCAAAGATGCGAGTTCCGAAAAATGTAAGTTTTGTTGGAAAATTGTTTTTTAGATGTCTAAAATCATTTAAAATGATTTTGAAACTATTTCGAATTCTTTTCAGGTTATCGTCTATTGGCCACCAGAGGATCTGAACGATATATCGAAAATTTTCGAGCTCATCTACAAGACAGCTGAAGAGAAGAGAAGAACTTACAAAGTTACATTCTTTGTTTCTGTCAAGGACGATGCTGATTACAAGACTGCGCTGATTGAAGAGATGGAAAAGAGAAAGGTCAGGGTACCTAGCTGGCTTAGAGAAAGCCTTGTAAAGTGAGTTCCTTGAAAACACTAGTTGAATTAACTTTTTAGTAATTTTCAGGAGCCTTGAACCAACAAAGAAGTCTGAAGATGAAAAATGCGAACGCACGTCTGTGGACTCGGAACTCGATTCCGCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTTTTCAGGTGATTGTGTTC</pcr_primer_p1>
		<pcr_primer_p2>AAACAATTTTCCAACAAAACTTA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CTATTTTTCAGGTGATTGTGTTCTGGCGCTCGGCAAAAACGAATTCCATATGAAATACACCTCCTTCTTCCTGAAGGCTCGTAAAGTGAACCTAACAAAACTCGACTTCAGAGATAAAGAGCTCTGGGAGGAAAAGTTAGAGGAGATGAAAGACAAACGAGTGGCCATGATTGCAACAGATTTATTCTTGGAATCAAAGATGCGAGTTCCGAAAAATGTAAGTTTTGTTGGAAAATTGTTT</canonical_amplicon>
		<polymorphic_amplicon>CTATTTTTCAGGTGATTGTGTTCTGGCGCTCGGCAAAAACGAATTCCATATGAAATACACCTCCTTCTTCCTGAAGGCTCGTAAAGTGAACCTAACAAAACTCGACTTCAGAGATAAAGAGCTCTGGGAGGAMAAGTTAGAGGAGATGAAAGACAAACGAGTGGCCATGATTGCAACAGATTTATTCTTGGAATCAAAGATGCGAGTTCCGAAAAATGTAAGTTTTGTTGGAAAATTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33243</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>109355</contig_pos>
        <strand>+</strand>
        <context>TTGGTTGAGG[G/T]GCAGAAATCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCATTGTTGATTCTTACCGTTTGTGATTATGGTGGGTAGTTTGGTTGAGG</left_flank>
        <right_flank>GCAGAAATCTCAAATCTGGAACTAATTTCAGACACACCTATTACTGCATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGACGAAATTTCAGGCTCTGCCGAATGTTCTGATGTCTCCTTCTCGTCCGTTGCATCGAAATTAGACGGTCTGAAGAGAGTGACACGTCTGTCGGTCAGTGGACATATTTCGGCATATCATGTTAAGGTTTCCATCTCGGATGACGACTTTCAGTTGGTTCGAGTCTCGAACGGGAATCCACTGGTAAGAACAACATCCTCCCTCAAGGGAATAAGCTCTTATCTAACCGACAAAAAAGAGAGACCGACATATTGTCGCCGGATGGACACGAAATATGTGTCGCCCGTTTTAAAAAGAAGAAGATGAATGTGTGAAGAAAAACCATGTTGTTGCAGGTCCTCTATTCTACGTTATCGAACACGCCATCTTGGACACACGTCGACTTTTTAGCTTCAGAAGTCCGGATATTGCCGGCTTTTGAACAAGCAACTGAAGATGTACGGGGGCCATTGTTGATTCTTACCGTTTGTGATTATGGTGGGTAGTTTGGTTGAGGGGCAGAAATCTCAAATCTGGAACTAATTTCAGACACACCTATTACTGCATTCGATGACTCATCGTACACGGTTGAATCACATCATGCGGGACTTGTATCCATGTATGAAAATGATCTATGTGTAGTATTTAGAACCTATCGATCAGGAGTGTTCTTTTTTTCAATGGCAGATCAAGGAGATGTTCTGATTGCTCAGATTATCCACGGAACTATTCATGTCATATTTGATTTTGGATCTTTAACACCTTCGAGGATAAGTGCTGGAAAAGCGCTGGATGATGGCAGATGGCATGAGGTATTCCTTGATAGAGTATCTTTCCTCTCAATATATTAATTTCAGCTGAGATGGCTTCATCAATTCGATTCGGTTCAACTCTCAATAGATGGAGTCCTGCTGAATCAAACTGCTCCGACGGGTCTCTATCGAAAATTGGACTTACATAGTGTGGTAAGTGCACTTCCTCCCGTTCTCGAGTGTAATTGTTGAATGAAATCTGAGAA</canonical>
            <polymorphic>AATGACGAAATTTCAGGCTCTGCCGAATGTTCTGATGTCTCCTTCTCGTCCGTTGCATCGAAATTAGACGGTCTGAAGAGAGTGACACGTCTGTCGGTCAGTGGACATATTTCGGCATATCATGTTAAGGTTTCCATCTCGGATGACGACTTTCAGTTGGTTCGAGTCTCGAACGGGAATCCACTGGTAAGAACAACATCCTCCCTCAAGGGAATAAGCTCTTATCTAACCGACAAAAAAGAGAGACCGACATATTGTCGCCGGATGGACACGAAATATGTGTCGCCCGTTTTAAAAAGAAGAAGATGAATGTGTGAAGAAAAACCATGTTGTTGCAGGTCCTCTATTCTACGTTATCGAACACGCCATCTTGGACACACGTCGACTTTTTAGCTTCAGAAGTCCGGATATTGCCGGCTTTTGAACAAGCAACTGAAGATGTACGGGGGCCATTGTTGATTCTTACCGTTTGTGATTATGGTGGGTAGTTTGGTTGAGGKGCAGAAATCTCAAATCTGGAACTAATTTCAGACACACCTATTACTGCATTCGATGACTCATCGTACACGGTTGAATCACATCATGCGGGACTTGTATCCATGTATGAAAATGATCTATGTGTAGTATTTAGAACCTATCGATCAGGAGTGTTCTTTTTTTCAATGGCAGATCAAGGAGATGTTCTGATTGCTCAGATTATCCACGGAACTATTCATGTCATATTTGATTTTGGATCTTTAACACCTTCGAGGATAAGTGCTGGAAAAGCGCTGGATGATGGCAGATGGCATGAGGTATTCCTTGATAGAGTATCTTTCCTCTCAATATATTAATTTCAGCTGAGATGGCTTCATCAATTCGATTCGGTTCAACTCTCAATAGATGGAGTCCTGCTGAATCAAACTGCTCCGACGGGTCTCTATCGAAAATTGGACTTACATAGTGTGGTAAGTGCACTTCCTCCCGTTCTCGAGTGTAATTGTTGAATGAAATCTGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGATGAATGTGTGAAGAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CGAATGCAGTAATAGGTGTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGATGAATGTGTGAAGAAAAACCATGTTGTTGCAGGTCCTCTATTCTACGTTATCGAACACGCCATCTTGGACACACGTCGACTTTTTAGCTTCAGAAGTCCGGATATTGCCGGCTTTTGAACAAGCAACTGAAGATGTACGGGGGCCATTGTTGATTCTTACCGTTTGTGATTATGGTGGGTAGTTTGGTTGAGGGGCAGAAATCTCAAATCTGGAACTAATTTCAGACACACCTATTACTGCATTCG</canonical_amplicon>
		<polymorphic_amplicon>AAGATGAATGTGTGAAGAAAAACCATGTTGTTGCAGGTCCTCTATTCTACGTTATCGAACACGCCATCTTGGACACACGTCGACTTTTTAGCTTCAGAAGTCCGGATATTGCCGGCTTTTGAACAAGCAACTGAAGATGTACGGGGGCCATTGTTGATTCTTACCGTTTGTGATTATGGTGGGTAGTTTGGTTGAGGKGCAGAAATCTCAAATCTGGAACTAATTTCAGACACACCTATTACTGCATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33244</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>181795</contig_pos>
        <strand>+</strand>
        <context>GTCAAGTATT[C/T]ACCCAATTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTCATTTCTAATATGAATTTGCTTTATAAGGTTTCTCTAGTCAAGTATT</left_flank>
        <right_flank>ACCCAATTTACAATTCCTATGTAATATGATTTTTTAATCAACGTTTTGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAACGGAAGCAGAAAGTAATACCAGATTCGAGAGATTCTGAGATCTTGAGTGGTCCACGGAGGAAGAATAGAAGCACCGCAACCATTGCAATCCATAGAAGCCACAGGAAAGTCCATGAACAGGCCATAGCCCTAAAATTGAGAATTTTAGAAAACCATGAAACCAGTCAGTGAGCTTGAAGATTGGAAATCGATAGGGGATTGAATAGGGGATTGAATTATCAAAACTTCATCAAGAAGCATTCAGCTGCGCCAGAGTTTCGCTCAGTCCTACTACCTGACTATAACTAATCTAAATCTCTACTATCGTCGATAATTAACAAAAAAAGCGCATGGGATTTCTGACAGCCGGCTGGTGGCGGTGACGTGCCAAAACAGAGCGGAGAGAACCGCGAGCGGAGGCGGACGAGAAATCGATTCAATTCTGTCGACACGGCCGCGGCCTTGCTTCATTTCTAATATGAATTTGCTTTATAAGGTTTCTCTAGTCAAGTATTCACCCAATTTACAATTCCTATGTAATATGATTTTTTAATCAACGTTTTGTTTCCAATTTAATAAAATCATGTCACCTGAGCAAAAAAAGATGGCAATTTTTATAATTATTAGTTTTCATTTATTTGCAAAAGAAAAGTTTGTAGTTTTGGCTTGAACTTCATTATAAAAATTATTTAATTATTTGGAAAGTAGGAATTGTTATAAATACAAAAAAATTAACCCGGAAAGCTGTAATATGTCTAAATATATTTTTAGAAAACTGGACTCCCAGAACTGTCAACAATACAAGATCGCCGCATGCCCGTGAACATAAATTATTTTGAATACTGTTTTCTCAGTTTATGAAGGCATTTACTACTATAATGATGCTATTTACTACACTATATTCCCTTTGTTGTTGTTTTACGTATAGATTTCACAAGCGGAACGAAAATTATAGCGACAATTTCACAAAATTGTAGAAAATTGAAAAAATTAATGTCAAAAAATATTTTTGAACC</canonical>
            <polymorphic>GAAAACGGAAGCAGAAAGTAATACCAGATTCGAGAGATTCTGAGATCTTGAGTGGTCCACGGAGGAAGAATAGAAGCACCGCAACCATTGCAATCCATAGAAGCCACAGGAAAGTCCATGAACAGGCCATAGCCCTAAAATTGAGAATTTTAGAAAACCATGAAACCAGTCAGTGAGCTTGAAGATTGGAAATCGATAGGGGATTGAATAGGGGATTGAATTATCAAAACTTCATCAAGAAGCATTCAGCTGCGCCAGAGTTTCGCTCAGTCCTACTACCTGACTATAACTAATCTAAATCTCTACTATCGTCGATAATTAACAAAAAAAGCGCATGGGATTTCTGACAGCCGGCTGGTGGCGGTGACGTGCCAAAACAGAGCGGAGAGAACCGCGAGCGGAGGCGGACGAGAAATCGATTCAATTCTGTCGACACGGCCGCGGCCTTGCTTCATTTCTAATATGAATTTGCTTTATAAGGTTTCTCTAGTCAAGTATTYACCCAATTTACAATTCCTATGTAATATGATTTTTTAATCAACGTTTTGTTTCCAATTTAATAAAATCATGTCACCTGAGCAAAAAAAGATGGCAATTTTTATAATTATTAGTTTTCATTTATTTGCAAAAGAAAAGTTTGTAGTTTTGGCTTGAACTTCATTATAAAAATTATTTAATTATTTGGAAAGTAGGAATTGTTATAAATACAAAAAAATTAACCCGGAAAGCTGTAATATGTCTAAATATATTTTTAGAAAACTGGACTCCCAGAACTGTCAACAATACAAGATCGCCGCATGCCCGTGAACATAAATTATTTTGAATACTGTTTTCTCAGTTTATGAAGGCATTTACTACTATAATGATGCTATTTACTACACTATATTCCCTTTGTTGTTGTTTTACGTATAGATTTCACAAGCGGAACGAAAATTATAGCGACAATTTCACAAAATTGTAGAAAATTGAAAAAATTAATGTCAAAAAATATTTTTGAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>233 185 74 72 69 66 64 54 50 38 32 28 19 6 5 5</canonical_bands>
                <polymorphic_bands>233 185 138 74 69 64 54 50 38 32 28 19 6 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTGCTTCATTTCTAATATGAATTT</pcr_primer_p1>
		<pcr_primer_p2>AGTTCAAGCCAAAACTACAAAC</pcr_primer_p2>
		<pcr_amplicon_size>212</pcr_amplicon_size>
		<canonical_amplicon>CTTGCTTCATTTCTAATATGAATTTGCTTTATAAGGTTTCTCTAGTCAAGTATTCACCCAATTTACAATTCCTATGTAATATGATTTTTTAATCAACGTTTTGTTTCCAATTTAATAAAATCATGTCACCTGAGCAAAAAAAGATGGCAATTTTTATAATTATTAGTTTTCATTTATTTGCAAAAGAAAAGTTTGTAGTTTTGGCTTGAACT</canonical_amplicon>
		<polymorphic_amplicon>CTTGCTTCATTTCTAATATGAATTTGCTTTATAAGGTTTCTCTAGTCAAGTATTYACCCAATTTACAATTCCTATGTAATATGATTTTTTAATCAACGTTTTGTTTCCAATTTAATAAAATCATGTCACCTGAGCAAAAAAAGATGGCAATTTTTATAATTATTAGTTTTCATTTATTTGCAAAAGAAAAGTTTGTAGTTTTGGCTTGAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33245</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>182035</contig_pos>
        <strand>+</strand>
        <context>TGTAATATGT[C/T]TAAATATATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGGAATTGTTATAAATACAAAAAAATTAACCCGGAAAGCTGTAATATGT</left_flank>
        <right_flank>TAAATATATTTTTAGAAAACTGGACTCCCAGAACTGTCAACAATACAAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCATTCAGCTGCGCCAGAGTTTCGCTCAGTCCTACTACCTGACTATAACTAATCTAAATCTCTACTATCGTCGATAATTAACAAAAAAAGCGCATGGGATTTCTGACAGCCGGCTGGTGGCGGTGACGTGCCAAAACAGAGCGGAGAGAACCGCGAGCGGAGGCGGACGAGAAATCGATTCAATTCTGTCGACACGGCCGCGGCCTTGCTTCATTTCTAATATGAATTTGCTTTATAAGGTTTCTCTAGTCAAGTATTCACCCAATTTACAATTCCTATGTAATATGATTTTTTAATCAACGTTTTGTTTCCAATTTAATAAAATCATGTCACCTGAGCAAAAAAAGATGGCAATTTTTATAATTATTAGTTTTCATTTATTTGCAAAAGAAAAGTTTGTAGTTTTGGCTTGAACTTCATTATAAAAATTATTTAATTATTTGGAAAGTAGGAATTGTTATAAATACAAAAAAATTAACCCGGAAAGCTGTAATATGTCTAAATATATTTTTAGAAAACTGGACTCCCAGAACTGTCAACAATACAAGATCGCCGCATGCCCGTGAACATAAATTATTTTGAATACTGTTTTCTCAGTTTATGAAGGCATTTACTACTATAATGATGCTATTTACTACACTATATTCCCTTTGTTGTTGTTTTACGTATAGATTTCACAAGCGGAACGAAAATTATAGCGACAATTTCACAAAATTGTAGAAAATTGAAAAAATTAATGTCAAAAAATATTTTTGAACCGAACCGTACGCTTTCAACGGTAGGGCGCGACCTCAAATTATCATCGATGGTCCCGCAACTCATCGCAAAAAAAGGAGTGCGCCTTTAAAAAAGACTACGGTTTAACTCGCAAGATTTTTACATTTTTTCTGCACCAAATTGTTGTTTCGCTGCTTTCAACTCGTTTGCTATATTGGAACCATATGATTAATGTACTTCTCAAAATCTATTTTTCCCCGTTTTCAGATGATTGTGGTCACT</canonical>
            <polymorphic>AGCATTCAGCTGCGCCAGAGTTTCGCTCAGTCCTACTACCTGACTATAACTAATCTAAATCTCTACTATCGTCGATAATTAACAAAAAAAGCGCATGGGATTTCTGACAGCCGGCTGGTGGCGGTGACGTGCCAAAACAGAGCGGAGAGAACCGCGAGCGGAGGCGGACGAGAAATCGATTCAATTCTGTCGACACGGCCGCGGCCTTGCTTCATTTCTAATATGAATTTGCTTTATAAGGTTTCTCTAGTCAAGTATTCACCCAATTTACAATTCCTATGTAATATGATTTTTTAATCAACGTTTTGTTTCCAATTTAATAAAATCATGTCACCTGAGCAAAAAAAGATGGCAATTTTTATAATTATTAGTTTTCATTTATTTGCAAAAGAAAAGTTTGTAGTTTTGGCTTGAACTTCATTATAAAAATTATTTAATTATTTGGAAAGTAGGAATTGTTATAAATACAAAAAAATTAACCCGGAAAGCTGTAATATGTYTAAATATATTTTTAGAAAACTGGACTCCCAGAACTGTCAACAATACAAGATCGCCGCATGCCCGTGAACATAAATTATTTTGAATACTGTTTTCTCAGTTTATGAAGGCATTTACTACTATAATGATGCTATTTACTACACTATATTCCCTTTGTTGTTGTTTTACGTATAGATTTCACAAGCGGAACGAAAATTATAGCGACAATTTCACAAAATTGTAGAAAATTGAAAAAATTAATGTCAAAAAATATTTTTGAACCGAACCGTACGCTTTCAACGGTAGGGCGCGACCTCAAATTATCATCGATGGTCCCGCAACTCATCGCAAAAAAAGGAGTGCGCCTTTAAAAAAGACTACGGTTTAACTCGCAAGATTTTTACATTTTTTCTGCACCAAATTGTTGTTTCGCTGCTTTCAACTCGTTTGCTATATTGGAACCATATGATTAATGTACTTCTCAAAATCTATTTTTCCCCGTTTTCAGATGATTGTGGTCACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTATTTGCAAAAGAAAAGTTTG</pcr_primer_p1>
		<pcr_primer_p2>GTAAATGCCTTCATAAACTGAGA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TTTATTTGCAAAAGAAAAGTTTGTAGTTTTGGCTTGAACTTCATTATAAAAATTATTTAATTATTTGGAAAGTAGGAATTGTTATAAATACAAAAAAATTAACCCGGAAAGCTGTAATATGTCTAAATATATTTTTAGAAAACTGGACTCCCAGAACTGTCAACAATACAAGATCGCCGCATGCCCGTGAACATAAATTATTTTGAATACTGTTTTCTCAGTTTATGAAGGCATTTAC</canonical_amplicon>
		<polymorphic_amplicon>TTTATTTGCAAAAGAAAAGTTTGTAGTTTTGGCTTGAACTTCATTATAAAAATTATTTAATTATTTGGAAAGTAGGAATTGTTATAAATACAAAAAAATTAACCCGGAAAGCTGTAATATGTYTAAATATATTTTTAGAAAACTGGACTCCCAGAACTGTCAACAATACAAGATCGCCGCATGCCCGTGAACATAAATTATTTTGAATACTGTTTTCTCAGTTTATGAAGGCATTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33246</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>182359</contig_pos>
        <strand>+</strand>
        <context>CGCAACTCAT[C/T]GCAAAAAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAACGGTAGGGCGCGACCTCAAATTATCATCGATGGTCCCGCAACTCAT</left_flank>
        <right_flank>GCAAAAAAAGGAGTGCGCCTTTAAAAAAGACTACGGTTTAACTCGCAAGA</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCATGTCACCTGAGCAAAAAAAGATGGCAATTTTTATAATTATTAGTTTTCATTTATTTGCAAAAGAAAAGTTTGTAGTTTTGGCTTGAACTTCATTATAAAAATTATTTAATTATTTGGAAAGTAGGAATTGTTATAAATACAAAAAAATTAACCCGGAAAGCTGTAATATGTCTAAATATATTTTTAGAAAACTGGACTCCCAGAACTGTCAACAATACAAGATCGCCGCATGCCCGTGAACATAAATTATTTTGAATACTGTTTTCTCAGTTTATGAAGGCATTTACTACTATAATGATGCTATTTACTACACTATATTCCCTTTGTTGTTGTTTTACGTATAGATTTCACAAGCGGAACGAAAATTATAGCGACAATTTCACAAAATTGTAGAAAATTGAAAAAATTAATGTCAAAAAATATTTTTGAACCGAACCGTACGCTTTCAACGGTAGGGCGCGACCTCAAATTATCATCGATGGTCCCGCAACTCATCGCAAAAAAAGGAGTGCGCCTTTAAAAAAGACTACGGTTTAACTCGCAAGATTTTTACATTTTTTCTGCACCAAATTGTTGTTTCGCTGCTTTCAACTCGTTTGCTATATTGGAACCATATGATTAATGTACTTCTCAAAATCTATTTTTCCCCGTTTTCAGATGATTGTGGTCACTCAGCATCTGCATGAAATGCAGCTGAAAGCGATGGACAAAGCTTTCGTGCCGCAAACAATGGCTGATTTAGTGTCAAACATAACGGCCCGCTCTACGGATGTCGAAGATGCGCTATTTAATCAAAAAGGAATGAAAGAGGTAACATTTCAACGAGATCAACATTAGAAATTTGTTTCAGGCTCCATTCCGAGATTTGGATCGAAGTGGAAAGGCAGTTTGTACAAAGAATAAAACGAAACAATGCCCATTTGGTAATACATGTCCTCTTCGTCACATAGATGGAGAGAAAGCAGTAGTATGTAAGCACTGGCTGCGTGGACTTTG</canonical>
            <polymorphic>ATCATGTCACCTGAGCAAAAAAAGATGGCAATTTTTATAATTATTAGTTTTCATTTATTTGCAAAAGAAAAGTTTGTAGTTTTGGCTTGAACTTCATTATAAAAATTATTTAATTATTTGGAAAGTAGGAATTGTTATAAATACAAAAAAATTAACCCGGAAAGCTGTAATATGTCTAAATATATTTTTAGAAAACTGGACTCCCAGAACTGTCAACAATACAAGATCGCCGCATGCCCGTGAACATAAATTATTTTGAATACTGTTTTCTCAGTTTATGAAGGCATTTACTACTATAATGATGCTATTTACTACACTATATTCCCTTTGTTGTTGTTTTACGTATAGATTTCACAAGCGGAACGAAAATTATAGCGACAATTTCACAAAATTGTAGAAAATTGAAAAAATTAATGTCAAAAAATATTTTTGAACCGAACCGTACGCTTTCAACGGTAGGGCGCGACCTCAAATTATCATCGATGGTCCCGCAACTCATYGCAAAAAAAGGAGTGCGCCTTTAAAAAAGACTACGGTTTAACTCGCAAGATTTTTACATTTTTTCTGCACCAAATTGTTGTTTCGCTGCTTTCAACTCGTTTGCTATATTGGAACCATATGATTAATGTACTTCTCAAAATCTATTTTTCCCCGTTTTCAGATGATTGTGGTCACTCAGCATCTGCATGAAATGCAGCTGAAAGCGATGGACAAAGCTTTCGTGCCGCAAACAATGGCTGATTTAGTGTCAAACATAACGGCCCGCTCTACGGATGTCGAAGATGCGCTATTTAATCAAAAAGGAATGAAAGAGGTAACATTTCAACGAGATCAACATTAGAAATTTGTTTCAGGCTCCATTCCGAGATTTGGATCGAAGTGGAAAGGCAGTTTGTACAAAGAATAAAACGAAACAATGCCCATTTGGTAATACATGTCCTCTTCGTCACATAGATGGAGAGAAAGCAGTAGTATGTAAGCACTGGCTGCGTGGACTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACTATATTCCCTTTGTTGTTG</pcr_primer_p1>
		<pcr_primer_p2>AAATGTAAAAATCTTGCGAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACACTATATTCCCTTTGTTGTTGTTTTACGTATAGATTTCACAAGCGGAACGAAAATTATAGCGACAATTTCACAAAATTGTAGAAAATTGAAAAAATTAATGTCAAAAAATATTTTTGAACCGAACCGTACGCTTTCAACGGTAGGGCGCGACCTCAAATTATCATCGATGGTCCCGCAACTCATCGCAAAAAAAGGAGTGCGCCTTTAAAAAAGACTACGGTTTAACTCGCAAGATTTTTACATTT</canonical_amplicon>
		<polymorphic_amplicon>ACACTATATTCCCTTTGTTGTTGTTTTACGTATAGATTTCACAAGCGGAACGAAAATTATAGCGACAATTTCACAAAATTGTAGAAAATTGAAAAAATTAATGTCAAAAAATATTTTTGAACCGAACCGTACGCTTTCAACGGTAGGGCGCGACCTCAAATTATCATCGATGGTCCCGCAACTCATYGCAAAAAAAGGAGTGCGCCTTTAAAAAAGACTACGGTTTAACTCGCAAGATTTTTACATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33247</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>182628</contig_pos>
        <strand>+</strand>
        <context>CGGCCCGCTC[C/T]ACGGATGTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCGTGCCGCAAACAATGGCTGATTTAGTGTCAAACATAACGGCCCGCTC</left_flank>
        <right_flank>ACGGATGTCGAAGATGCGCTATTTAATCAAAAAGGAATGAAAGAGGTAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAGTTTATGAAGGCATTTACTACTATAATGATGCTATTTACTACACTATATTCCCTTTGTTGTTGTTTTACGTATAGATTTCACAAGCGGAACGAAAATTATAGCGACAATTTCACAAAATTGTAGAAAATTGAAAAAATTAATGTCAAAAAATATTTTTGAACCGAACCGTACGCTTTCAACGGTAGGGCGCGACCTCAAATTATCATCGATGGTCCCGCAACTCATCGCAAAAAAAGGAGTGCGCCTTTAAAAAAGACTACGGTTTAACTCGCAAGATTTTTACATTTTTTCTGCACCAAATTGTTGTTTCGCTGCTTTCAACTCGTTTGCTATATTGGAACCATATGATTAATGTACTTCTCAAAATCTATTTTTCCCCGTTTTCAGATGATTGTGGTCACTCAGCATCTGCATGAAATGCAGCTGAAAGCGATGGACAAAGCTTTCGTGCCGCAAACAATGGCTGATTTAGTGTCAAACATAACGGCCCGCTCTACGGATGTCGAAGATGCGCTATTTAATCAAAAAGGAATGAAAGAGGTAACATTTCAACGAGATCAACATTAGAAATTTGTTTCAGGCTCCATTCCGAGATTTGGATCGAAGTGGAAAGGCAGTTTGTACAAAGAATAAAACGAAACAATGCCCATTTGGTAATACATGTCCTCTTCGTCACATAGATGGAGAGAAAGCAGTAGTATGTAAGCACTGGCTGCGTGGACTTTGCAAAAAGGGAGATCAATGCGAATTCCTTCATGAATACGATCTGACGAAGATGCCAGAATGCTTCTTCTTCTCGAAATACAGTGCATGCAGCAACAGAGAATGCCCGTTTCGGCATATTGACCCAGAAACCAAATTAAAAGACTGTCCATGGTATGATCGTGGATTCTGTAGGCATGGACCATATTGCAAACATCGCCATCGTCGTCGAGCTGTTTGTCCAAATTACCTTGCAGGTTTCTGCCCACAGGGTCCAGATTGTCAATATGCGC</canonical>
            <polymorphic>CTCAGTTTATGAAGGCATTTACTACTATAATGATGCTATTTACTACACTATATTCCCTTTGTTGTTGTTTTACGTATAGATTTCACAAGCGGAACGAAAATTATAGCGACAATTTCACAAAATTGTAGAAAATTGAAAAAATTAATGTCAAAAAATATTTTTGAACCGAACCGTACGCTTTCAACGGTAGGGCGCGACCTCAAATTATCATCGATGGTCCCGCAACTCATCGCAAAAAAAGGAGTGCGCCTTTAAAAAAGACTACGGTTTAACTCGCAAGATTTTTACATTTTTTCTGCACCAAATTGTTGTTTCGCTGCTTTCAACTCGTTTGCTATATTGGAACCATATGATTAATGTACTTCTCAAAATCTATTTTTCCCCGTTTTCAGATGATTGTGGTCACTCAGCATCTGCATGAAATGCAGCTGAAAGCGATGGACAAAGCTTTCGTGCCGCAAACAATGGCTGATTTAGTGTCAAACATAACGGCCCGCTCYACGGATGTCGAAGATGCGCTATTTAATCAAAAAGGAATGAAAGAGGTAACATTTCAACGAGATCAACATTAGAAATTTGTTTCAGGCTCCATTCCGAGATTTGGATCGAAGTGGAAAGGCAGTTTGTACAAAGAATAAAACGAAACAATGCCCATTTGGTAATACATGTCCTCTTCGTCACATAGATGGAGAGAAAGCAGTAGTATGTAAGCACTGGCTGCGTGGACTTTGCAAAAAGGGAGATCAATGCGAATTCCTTCATGAATACGATCTGACGAAGATGCCAGAATGCTTCTTCTTCTCGAAATACAGTGCATGCAGCAACAGAGAATGCCCGTTTCGGCATATTGACCCAGAAACCAAATTAAAAGACTGTCCATGGTATGATCGTGGATTCTGTAGGCATGGACCATATTGCAAACATCGCCATCGTCGTCGAGCTGTTTGTCCAAATTACCTTGCAGGTTTCTGCCCACAGGGTCCAGATTGTCAATATGCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGAACCATATGATTAATGTACT</pcr_primer_p1>
		<pcr_primer_p2>AGCCTGAAACAAATTTCTAATGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGGAACCATATGATTAATGTACTTCTCAAAATCTATTTTTCCCCGTTTTCAGATGATTGTGGTCACTCAGCATCTGCATGAAATGCAGCTGAAAGCGATGGACAAAGCTTTCGTGCCGCAAACAATGGCTGATTTAGTGTCAAACATAACGGCCCGCTCTACGGATGTCGAAGATGCGCTATTTAATCAAAAAGGAATGAAAGAGGTAACATTTCAACGAGATCAACATTAGAAATTTGTTTCAGGCT</canonical_amplicon>
		<polymorphic_amplicon>TTGGAACCATATGATTAATGTACTTCTCAAAATCTATTTTTCCCCGTTTTCAGATGATTGTGGTCACTCAGCATCTGCATGAAATGCAGCTGAAAGCGATGGACAAAGCTTTCGTGCCGCAAACAATGGCTGATTTAGTGTCAAACATAACGGCCCGCTCYACGGATGTCGAAGATGCGCTATTTAATCAAAAAGGAATGAAAGAGGTAACATTTCAACGAGATCAACATTAGAAATTTGTTTCAGGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33248</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>262450</contig_pos>
        <strand>+</strand>
        <context>TGAATCAAAA[C/T]ATTTCTCAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAATTTTTAGAGTTAGTCTAGTGAGCCCACATTTTTAATTGAATCAAAA</left_flank>
        <right_flank>ATTTCTCAGGATATTTTTATCGATTAGATCGAACTTTGAGGTCATAGGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGAAAAAGACACAAGTACCTATGAAGCTCTACCGAAGCTCTTCCTCTACTCGCCCTCCTACATCATTTTTTTCGAAATGAAGAATGTCTGCGTCTCTTTGCCTCCAGCGCTATTTCTCTCATTCTTTGGTACTTCGACCTGAGAAAAAGACATGATTGGACCTCCCCGAGTACCACTTTTTCCTGGCTAGACGTCTATTGCGCAGACATTTTTCGCTTTTTTTTTCTGAAATTTCTCTCTCCAAAATCGAAATTTGAATACATCACTTTTTGTTCAAAGATTGAAAAGTCGTCGAAATGGTTTGGAGAGGGCAAAGATTGACATTAGTCTAGTAGTTTGGTAACATCTTGAGCATTTTTTGTGAAGATGCCCTCTCTTAAACAATAGTTCACACATGATGTTATCCTCTCACTAAAAAAACGTTTTTTAAAGCTGATTTGAATGATTTGAATTTTTAGAGTTAGTCTAGTGAGCCCACATTTTTAATTGAATCAAAACATTTCTCAGGATATTTTTATCGATTAGATCGAACTTTGAGGTCATAGGTATAATTAAGCGTATATACATTGTAAGAAATAATTTTATTCGTCTGACTATGAGTTTATAGTTGTTCTCTAGAATAGAAACTTTCGATTTTGATTCTGCATTTTTAGTTAAAAAAAGAACATTATGTCACAATTTTCAGTATATTCTTATTACTGTGAAACCTTTAATAGAAGGGCCCCCTAACATTTAACGTTGAGCACATACATCTCGGTTCATGCCAAAGATAAAGAAAATTGGTCAACTAATAAATTGTTTATCATTATTTCACCAACATTTTATCAGTTAACACATTTTTGGTGTCTTGCATAGGCGCCAAGAAAAATTAACTCAAACATCACAAGATGGGGCCCTTCTATGACAGGTTGTACAGTAAGTTTAGTTTGTCAGTGTTGTTTTCGAGAATAGAAACTTTTGACTATGATATTAAATTTTTAGATTAAAAAGAACAGTAA</canonical>
            <polymorphic>CTCGAAAAAGACACAAGTACCTATGAAGCTCTACCGAAGCTCTTCCTCTACTCGCCCTCCTACATCATTTTTTTCGAAATGAAGAATGTCTGCGTCTCTTTGCCTCCAGCGCTATTTCTCTCATTCTTTGGTACTTCGACCTGAGAAAAAGACATGATTGGACCTCCCCGAGTACCACTTTTTCCTGGCTAGACGTCTATTGCGCAGACATTTTTCGCTTTTTTTTTCTGAAATTTCTCTCTCCAAAATCGAAATTTGAATACATCACTTTTTGTTCAAAGATTGAAAAGTCGTCGAAATGGTTTGGAGAGGGCAAAGATTGACATTAGTCTAGTAGTTTGGTAACATCTTGAGCATTTTTTGTGAAGATGCCCTCTCTTAAACAATAGTTCACACATGATGTTATCCTCTCACTAAAAAAACGTTTTTTAAAGCTGATTTGAATGATTTGAATTTTTAGAGTTAGTCTAGTGAGCCCACATTTTTAATTGAATCAAAAYATTTCTCAGGATATTTTTATCGATTAGATCGAACTTTGAGGTCATAGGTATAATTAAGCGTATATACATTGTAAGAAATAATTTTATTCGTCTGACTATGAGTTTATAGTTGTTCTCTAGAATAGAAACTTTCGATTTTGATTCTGCATTTTTAGTTAAAAAAAGAACATTATGTCACAATTTTCAGTATATTCTTATTACTGTGAAACCTTTAATAGAAGGGCCCCCTAACATTTAACGTTGAGCACATACATCTCGGTTCATGCCAAAGATAAAGAAAATTGGTCAACTAATAAATTGTTTATCATTATTTCACCAACATTTTATCAGTTAACACATTTTTGGTGTCTTGCATAGGCGCCAAGAAAAATTAACTCAAACATCACAAGATGGGGCCCTTCTATGACAGGTTGTACAGTAAGTTTAGTTTGTCAGTGTTGTTTTCGAGAATAGAAACTTTTGACTATGATATTAAATTTTTAGATTAAAAAGAACAGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCAAAGATTGACATTAGTCTAGTA</pcr_primer_p1>
		<pcr_primer_p2>ACGCTTAATTATACCTATGACCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGCAAAGATTGACATTAGTCTAGTAGTTTGGTAACATCTTGAGCATTTTTTGTGAAGATGCCCTCTCTTAAACAATAGTTCACACATGATGTTATCCTCTCACTAAAAAAACGTTTTTTAAAGCTGATTTGAATGATTTGAATTTTTAGAGTTAGTCTAGTGAGCCCACATTTTTAATTGAATCAAAACATTTCTCAGGATATTTTTATCGATTAGATCGAACTTTGAGGTCATAGGTATAATTAAGCGT</canonical_amplicon>
		<polymorphic_amplicon>GGCAAAGATTGACATTAGTCTAGTAGTTTGGTAACATCTTGAGCATTTTTTGTGAAGATGCCCTCTCTTAAACAATAGTTCACACATGATGTTATCCTCTCACTAAAAAAACGTTTTTTAAAGCTGATTTGAATGATTTGAATTTTTAGAGTTAGTCTAGTGAGCCCACATTTTTAATTGAATCAAAAYATTTCTCAGGATATTTTTATCGATTAGATCGAACTTTGAGGTCATAGGTATAATTAAGCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33249</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>262847</contig_pos>
        <strand></strand>
        <context>aagatggggc[C/T]cttctatgac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCTTGCATAGGCGCCAAGAAAAATTAACTCAAACATCACAAGATGGGGC</left_flank>
        <right_flank>CTTCTATGACAGGTTGTACAGTAAGTTTAGTTTGTCAGTGTTGTTTTCGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATGTTATCCTCTCACTAAAAAAACGTTTTTTAAAGCTGATTTGAATGATTTGAATTTTTAGAGTTAGTCTAGTGAGCCCACATTTTTAATTGAATCAAAACATTTCTCAGGATATTTTTATCGATTAGATCGAACTTTGAGGTCATAGGTATAATTAAGCGTATATACATTGTAAGAAATAATTTTATTCGTCTGACTATGAGTTTATAGTTGTTCTCTAGAATAGAAACTTTCGATTTTGATTCTGCATTTTTAGTTAAAAAAAGAACATTATGTCACAATTTTCAGTATATTCTTATTACTGTGAAACCTTTAATAGAAGGGCCCCCTAACATTTAACGTTGAGCACATACATCTCGGTTCATGCCAAAGATAAAGAAAATTGGTCAACTAATAAATTGTTTATCATTATTTCACCAACATTTTATCAGTTAACACATTTTTGGTGTCTTGCATAGGCGCCAAGAAAAATTAACTCAAACATCACAAGATGGGGCCCTTCTATGACAGGTTGTACAGTAAGTTTAGTTTGTCAGTGTTGTTTTCGAGAATAGAAACTTTTGACTATGATATTAAATTTTTAGATTAAAAAGAACAGTAAATAACAGTCTCCGATTTCTTATCTACTCTCATATCCTTCCAATCCTCAATTTCAAATTTTGGAACCTTCAGAGAAACTATAATTTCTTCTTGACGGCTCGCCGAACAACCCATCTTCAGAATTGGATTTACACACTACGTCTTCTTGTCTATTTATCCTTTTATCCTAACCCCATATTTCGTGTCCCCTGTTTCAAAAAGGGACAAAATAATTGGTGTAAACATCGGCGTGCTTATCGAATAGTTCTGTCAAGATGAACTACACGCCTGGATCGTATCTCCAGAATCTTCTGAAGAGATCGGCAAGCAACGAAGGCTCTGATCATAATAACGGCGCATCTTCATCTTCAGCTTCACGTCGTCTACCTCCTCGTCCACCATTCGAACCATCTCATTCA</canonical>
            <polymorphic>TGATGTTATCCTCTCACTAAAAAAACGTTTTTTAAAGCTGATTTGAATGATTTGAATTTTTAGAGTTAGTCTAGTGAGCCCACATTTTTAATTGAATCAAAACATTTCTCAGGATATTTTTATCGATTAGATCGAACTTTGAGGTCATAGGTATAATTAAGCGTATATACATTGTAAGAAATAATTTTATTCGTCTGACTATGAGTTTATAGTTGTTCTCTAGAATAGAAACTTTCGATTTTGATTCTGCATTTTTAGTTAAAAAAAGAACATTATGTCACAATTTTCAGTATATTCTTATTACTGTGAAACCTTTAATAGAAGGGCCCCCTAACATTTAACGTTGAGCACATACATCTCGGTTCATGCCAAAGATAAAGAAAATTGGTCAACTAATAAATTGTTTATCATTATTTCACCAACATTTTATCAGTTAACACATTTTTGGTGTCTTGCATAGGCGCCAAGAAAAATTAACTCAAACATCACAAGATGGGGCYCTTCTATGACAGGTTGTACAGTAAGTTTAGTTTGTCAGTGTTGTTTTCGAGAATAGAAACTTTTGACTATGATATTAAATTTTTAGATTAAAAAGAACAGTAAATAACAGTCTCCGATTTCTTATCTACTCTCATATCCTTCCAATCCTCAATTTCAAATTTTGGAACCTTCAGAGAAACTATAATTTCTTCTTGACGGCTCGCCGAACAACCCATCTTCAGAATTGGATTTACACACTACGTCTTCTTGTCTATTTATCCTTTTATCCTAACCCCATATTTCGTGTCCCCTGTTTCAAAAAGGGACAAAATAATTGGTGTAAACATCGGCGTGCTTATCGAATAGTTCTGTCAAGATGAACTACACGCCTGGATCGTATCTCCAGAATCTTCTGAAGAGATCGGCAAGCAACGAAGGCTCTGATCATAATAACGGCGCATCTTCATCTTCAGCTTCACGTCGTCTACCTCCTCGTCCACCATTCGAACCATCTCATTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGGCCC</site>
                <isoschizomers>
                    <enzyme>ApaI</enzyme>
                    <enzyme>Bsp120I</enzyme>
                    <enzyme>PspOMI</enzyme>
                </isoschizomers>
                <canonical_bands>500 328 172</canonical_bands>
                <polymorphic_bands>672 328</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>500 248 172 80</canonical_bands>
                <polymorphic_bands>672 248 80</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>500 328 172</canonical_bands>
                <polymorphic_bands>672 328</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>500 248 150 80 22</canonical_bands>
                <polymorphic_bands>650 248 80 22</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>334 326 169 136 35</canonical_bands>
                <polymorphic_bands>334 326 204 136</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>502 326 172</canonical_bands>
                <polymorphic_bands>674 326</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>248 219 201 172 47 41 37 35</canonical_bands>
                <polymorphic_bands>373 248 219 47 41 37 35</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>504 324 172</canonical_bands>
                <polymorphic_bands>676 324</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>501 327 172</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTTGATTCTGCATTTTTAGT</pcr_primer_p1>
		<pcr_primer_p2>CTATTCTCGAAAACAACACTGAC</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>GATTTTGATTCTGCATTTTTAGTTAAAAAAAGAACATTATGTCACAATTTTCAGTATATTCTTATTACTGTGAAACCTTTAATAGAAGGGCCCCCTAACATTTAACGTTGAGCACATACATCTCGGTTCATGCCAAAGATAAAGAAAATTGGTCAACTAATAAATTGTTTATCATTATTTCACCAACATTTTATCAGTTAACACATTTTTGGTGTCTTGCATAGGCGCCAAGAAAAATTAACTCAAACATCACAAGATGGGGCCCTTCTATGACAGGTTGTACAGTAAGTTTAGTTTGTCAGTGTTGTTTTCGAGAATAG</canonical_amplicon>
		<polymorphic_amplicon>GATTTTGATTCTGCATTTTTAGTTAAAAAAAGAACATTATGTCACAATTTTCAGTATATTCTTATTACTGTGAAACCTTTAATAGAAGGGCCCCCTAACATTTAACGTTGAGCACATACATCTCGGTTCATGCCAAAGATAAAGAAAATTGGTCAACTAATAAATTGTTTATCATTATTTCACCAACATTTTATCAGTTAACACATTTTTGGTGTCTTGCATAGGCGCCAAGAAAAATTAACTCAAACATCACAAGATGGGGCYCTTCTATGACAGGTTGTACAGTAAGTTTAGTTTGTCAGTGTTGTTTTCGAGAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33250</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>275372</contig_pos>
        <strand>+</strand>
        <context>TGAATTTTCA[A/G]TTCCGGCCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAGTGAGTTTAATATATTGTTTTGATTTTTGACTTCTCATGAATTTTCA</left_flank>
        <right_flank>TTCCGGCCTGGTTGAAACACGACAATCTGAAGTCTATCACCGTGAAGGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAGTTGGAAGAGTTGATCCAAATACCACGAATCTCAAAGTGTCCGGACTTCGTAACAAGGGCAACTATAAGTTCCGTGTCAAGGCAGTCAACAACGAAGGAGAATCAGAACCACTCTCTGCCGATCAATACACTCAGATCAAGGATCCATGGGATGAACCAGGAAAGCCAGGACGTCCAGAGATTACCGACTTCGATGCGGACAGAATCGATATTGCTTGGGAGCCACCACACAAAGATGGTGGAGCTCCAATAGAGGAATACATCGTTGAAGTTCGTGATCCAGACACTAAAGAATGGAAGGAGGTCAAACGTGTCCCAGATACGAATGCTTCGATCACTGGTTTGAAGGAAGGAAAGGAGTACCAATTCAGAGTTAAAGCTGTTAACAAAGCAGGACCTGGACAACCATCCGAACCATCCGAGAAACAACTTGCCAAGCCGAAATTCAGTGAGTTTAATATATTGTTTTGATTTTTGACTTCTCATGAATTTTCAGTTCCGGCCTGGTTGAAACACGACAATCTGAAGTCTATCACCGTGAAGGCTGGAGCCACTGTTCGTTGGGAAGTGAAGATCGGTGGAGAACCAATTCCAGAAGTCAAATGGTTCAAGGGAGATCAACATCTTGAAAACGGAATTCAACTCACCATCGATACTCGCAAGAACGAGCATACTATCCTTTGCATTCCATCTGCAATGCGTTCTGACGTTGGAGAGTACCGTTTGACAGTGAAGAACTCTCATGGAGCTGACGAAGAAAAGGCGAATTTGATTGTTTTGGATAGACCAAGCAAACCGAATGGACCACTTGAAGTGTCAGATGTCTTTGAGGACAATCTCAATCTTTCATGGAAACCACCAGATGATGATGGAGGTGAGCCAATCGAATATTATGAAGTCGAGAAGCTCGATACCGCCACTGGAAGATGGGTTCCATGTGCCAAGGTTAAGGACACCAAGGCTCATATTGATGGTCTCAAGAAGGGACAAACCTAC</canonical>
            <polymorphic>TGAAGTTGGAAGAGTTGATCCAAATACCACGAATCTCAAAGTGTCCGGACTTCGTAACAAGGGCAACTATAAGTTCCGTGTCAAGGCAGTCAACAACGAAGGAGAATCAGAACCACTCTCTGCCGATCAATACACTCAGATCAAGGATCCATGGGATGAACCAGGAAAGCCAGGACGTCCAGAGATTACCGACTTCGATGCGGACAGAATCGATATTGCTTGGGAGCCACCACACAAAGATGGTGGAGCTCCAATAGAGGAATACATCGTTGAAGTTCGTGATCCAGACACTAAAGAATGGAAGGAGGTCAAACGTGTCCCAGATACGAATGCTTCGATCACTGGTTTGAAGGAAGGAAAGGAGTACCAATTCAGAGTTAAAGCTGTTAACAAAGCAGGACCTGGACAACCATCCGAACCATCCGAGAAACAACTTGCCAAGCCGAAATTCAGTGAGTTTAATATATTGTTTTGATTTTTGACTTCTCATGAATTTTCARTTCCGGCCTGGTTGAAACACGACAATCTGAAGTCTATCACCGTGAAGGCTGGAGCCACTGTTCGTTGGGAAGTGAAGATCGGTGGAGAACCAATTCCAGAAGTCAAATGGTTCAAGGGAGATCAACATCTTGAAAACGGAATTCAACTCACCATCGATACTCGCAAGAACGAGCATACTATCCTTTGCATTCCATCTGCAATGCGTTCTGACGTTGGAGAGTACCGTTTGACAGTGAAGAACTCTCATGGAGCTGACGAAGAAAAGGCGAATTTGATTGTTTTGGATAGACCAAGCAAACCGAATGGACCACTTGAAGTGTCAGATGTCTTTGAGGACAATCTCAATCTTTCATGGAAACCACCAGATGATGATGGAGGTGAGCCAATCGAATATTATGAAGTCGAGAAGCTCGATACCGCCACTGGAAGATGGGTTCCATGTGCCAAGGTTAAGGACACCAAGGCTCATATTGATGGTCTCAAGAAGGGACAAACCTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCATCCGAGAAACAACTT</pcr_primer_p1>
		<pcr_primer_p2>GAGTATCGATGGTGAGTTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AACCATCCGAGAAACAACTTGCCAAGCCGAAATTCAGTGAGTTTAATATATTGTTTTGATTTTTGACTTCTCATGAATTTTCAGTTCCGGCCTGGTTGAAACACGACAATCTGAAGTCTATCACCGTGAAGGCTGGAGCCACTGTTCGTTGGGAAGTGAAGATCGGTGGAGAACCAATTCCAGAAGTCAAATGGTTCAAGGGAGATCAACATCTTGAAAACGGAATTCAACTCACCATCGATACTC</canonical_amplicon>
		<polymorphic_amplicon>AACCATCCGAGAAACAACTTGCCAAGCCGAAATTCAGTGAGTTTAATATATTGTTTTGATTTTTGACTTCTCATGAATTTTCARTTCCGGCCTGGTTGAAACACGACAATCTGAAGTCTATCACCGTGAAGGCTGGAGCCACTGTTCGTTGGGAAGTGAAGATCGGTGGAGAACCAATTCCAGAAGTCAAATGGTTCAAGGGAGATCAACATCTTGAAAACGGAATTCAACTCACCATCGATACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33251</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>292610</contig_pos>
        <strand></strand>
        <context>GTGCATGATC[C/T]GCATGTGAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATTTGCTCTGCTACAGCGAAGACAGTCAGAAAAAGAACCGTGCATGATC</left_flank>
        <right_flank>GCATGTGAGGAGAAGAACTCTGCGAGGAACTTTGTCGATGATCAAGGTAG</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATGAATAAATTAAATGAAGACTGATTAGGCAACAGCAGAAATAATATCTGCAGATGGTTCTTTGTCCTCGATGAACCCTTTGAGTTCGTTGATGATGACATGAATCTCGCGTCCGCTGGTCTCTGGGAGACAGGTCAGCAAGTAGACCAATGCCAGAGCTGATGGAATGGCGAACAAGACCACAAACGAGAAGGCGCCGATGTTCATGAAGAGTGGAATAGTTGAGAAATTGGTCACAACTACGAGACAGCTATGAATCGAGTAAACGAAGCAGAACATCATTGATCTGTTGGCCAGTGGAGACAACTCTGGTGGGATAGACCAGATAACGGGGCCGACTCCGATTCTGAATAGAAAAAGTTATTTTCGTTGTTATTTTCCAAAGCAGACTCACCCATAGGCCATGACGAATCCGAAACATGCTCCCATAGCGATCGATTGTTGGTGCATTTGCTCTGCTACAGCGAAGACAGTCAGAAAAAGAACCGTGCATGATCCGCATGTGAGGAGAAGAACTCTGCGAGGAACTTTGTCGATGATCAAGGTAGAGCAGATAGAAGAGACCGTGAGCACCACCATCATCAAACTTGAGGCCATTTGAGATGTTCTCCTGTAATCAGTTCTTAGAAACATCCTTTATTTTCATAATATGATCTTACATATCTACGCCCATATCAGTGAAGAAGAATGTGCTGCTCTGAAGGATCGGATAGAAAGGAAGTGTTAAAACTGCTGCAGCAACGGACAACAACATTGCCTTCCTAAGATGTGGGGTCGTCAGAATGTGCATCACTGAAGTTGCTGGTTCTTTATCTTCAATATTGTTTTTATTGTTAGCAGCCAATTCTTCTTTTTGGTGTTGTTCCATCGAATCGATAAGTAGAGCTTGATCAGGCAGGAATCCTTGGAAGAACCTTAGTGATTTCAGTGCAGCCACCTTGTCTTTTTTCACCAAAAGTAAGAACTTTGGGGTGTCAGGCATCCAAAGGATAAACGCC</canonical>
            <polymorphic>GAATGAATAAATTAAATGAAGACTGATTAGGCAACAGCAGAAATAATATCTGCAGATGGTTCTTTGTCCTCGATGAACCCTTTGAGTTCGTTGATGATGACATGAATCTCGCGTCCGCTGGTCTCTGGGAGACAGGTCAGCAAGTAGACCAATGCCAGAGCTGATGGAATGGCGAACAAGACCACAAACGAGAAGGCGCCGATGTTCATGAAGAGTGGAATAGTTGAGAAATTGGTCACAACTACGAGACAGCTATGAATCGAGTAAACGAAGCAGAACATCATTGATCTGTTGGCCAGTGGAGACAACTCTGGTGGGATAGACCAGATAACGGGGCCGACTCCGATTCTGAATAGAAAAAGTTATTTTCGTTGTTATTTTCCAAAGCAGACTCACCCATAGGCCATGACGAATCCGAAACATGCTCCCATAGCGATCGATTGTTGGTGCATTTGCTCTGCTACAGCGAAGACAGTCAGAAAAAGAACCGTGCATGATCYGCATGTGAGGAGAAGAACTCTGCGAGGAACTTTGTCGATGATCAAGGTAGAGCAGATAGAAGAGACCGTGAGCACCACCATCATCAAACTTGAGGCCATTTGAGATGTTCTCCTGTAATCAGTTCTTAGAAACATCCTTTATTTTCATAATATGATCTTACATATCTACGCCCATATCAGTGAAGAAGAATGTGCTGCTCTGAAGGATCGGATAGAAAGGAAGTGTTAAAACTGCTGCAGCAACGGACAACAACATTGCCTTCCTAAGATGTGGGGTCGTCAGAATGTGCATCACTGAAGTTGCTGGTTCTTTATCTTCAATATTGTTTTTATTGTTAGCAGCCAATTCTTCTTTTTGGTGTTGTTCCATCGAATCGATAAGTAGAGCTTGATCAGGCAGGAATCCTTGGAAGAACCTTAGTGATTTCAGTGCAGCCACCTTGTCTTTTTTCACCAAAAGTAAGAACTTTGGGGTGTCAGGCATCCAAAGGATAAACGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 384 115</canonical_bands>
                <polymorphic_bands>885 115</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTATTTTCCAAAGCAGACTCA</pcr_primer_p1>
		<pcr_primer_p2>ACTGATTACAGGAGAACATCTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTATTTTCCAAAGCAGACTCACCCATAGGCCATGACGAATCCGAAACATGCTCCCATAGCGATCGATTGTTGGTGCATTTGCTCTGCTACAGCGAAGACAGTCAGAAAAAGAACCGTGCATGATCCGCATGTGAGGAGAAGAACTCTGCGAGGAACTTTGTCGATGATCAAGGTAGAGCAGATAGAAGAGACCGTGAGCACCACCATCATCAAACTTGAGGCCATTTGAGATGTTCTCCTGTAATCAGT</canonical_amplicon>
		<polymorphic_amplicon>GTTATTTTCCAAAGCAGACTCACCCATAGGCCATGACGAATCCGAAACATGCTCCCATAGCGATCGATTGTTGGTGCATTTGCTCTGCTACAGCGAAGACAGTCAGAAAAAGAACCGTGCATGATCYGCATGTGAGGAGAAGAACTCTGCGAGGAACTTTGTCGATGATCAAGGTAGAGCAGATAGAAGAGACCGTGAGCACCACCATCATCAAACTTGAGGCCATTTGAGATGTTCTCCTGTAATCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33252</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>295116</contig_pos>
        <strand>+</strand>
        <context>AGCGAATAAC[C/T]TGAATTTTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTTTGGGGGAATCCCCTGCCAGTGTAATCATGCAGATAGCGAATAAC</left_flank>
        <right_flank>TGAATTTTAATGTGTAAATTTGATCTAAAAGATGTGTGAACAAATGAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAAAACGATTGAGCCGGTGACCGATGGTCAGTAGACAATCTTATAAAATCACTGTTCAAACAAAAGTTAGAAGAACTAGCCAAACAATATTTGCTTTTTAAACGATCTCTCGAAATTTCTAAGCCTCATTAATTGCGGCGGAAAATTGGGGGAATACCTTCTTCGACAAGCGATGTGATATCATTAGAAAGGCGACGGGTGATAATAAGGGGCGGCTGCGTCAGCCGACAGATTCAACAATTCAGAAAATGCGCATTTGCATATTTGATCTCGATGGAATTTCGTGCTACAAACACATGTAGGCGTAGATTTCGACAAAGTGAATAATGCAACAAAATTAAGGTTTCAAAATCACTCAATTGTCAATCAGAACTACTCATTCAACCTGCAACAGAGAAAAAAAATCGGGATAAAAACATCTGAAACTTTTCATAAATATAATTCGCAAAATTTTGGGGGAATCCCCTGCCAGTGTAATCATGCAGATAGCGAATAACCTGAATTTTAATGTGTAAATTTGATCTAAAAGATGTGTGAACAAATGAATCAGCAATTCGGTAATCAAAGCACGAGAAATTCATATTAAAAGCAGGATAAGTTGATTTTGGAGAGAAATATTCGACGAAAGCGAAAAACTATGGCGCGCACAGTACTAAATCTATCTGTGCGAAGCCTACACAACAGTCTCTGCAATGCGCCTTTAAATTGACAGTAACCTGAAATGTAAAAATTTTCTGTGATTTTTTTTCAGAAATCTCTGCGGCTGCACGCTCTCCCACAGAACAATTCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGTTCCAAGATGATTCAAATGATTCTTAAAAAATTAATTAGTGGTTATAGATTCATGTATGGTCGTTTTCCGGAAGAAAAAATGTCAAAAATGGTCATTT</canonical>
            <polymorphic>GGAAAAACGATTGAGCCGGTGACCGATGGTCAGTAGACAATCTTATAAAATCACTGTTCAAACAAAAGTTAGAAGAACTAGCCAAACAATATTTGCTTTTTAAACGATCTCTCGAAATTTCTAAGCCTCATTAATTGCGGCGGAAAATTGGGGGAATACCTTCTTCGACAAGCGATGTGATATCATTAGAAAGGCGACGGGTGATAATAAGGGGCGGCTGCGTCAGCCGACAGATTCAACAATTCAGAAAATGCGCATTTGCATATTTGATCTCGATGGAATTTCGTGCTACAAACACATGTAGGCGTAGATTTCGACAAAGTGAATAATGCAACAAAATTAAGGTTTCAAAATCACTCAATTGTCAATCAGAACTACTCATTCAACCTGCAACAGAGAAAAAAAATCGGGATAAAAACATCTGAAACTTTTCATAAATATAATTCGCAAAATTTTGGGGGAATCCCCTGCCAGTGTAATCATGCAGATAGCGAATAACYTGAATTTTAATGTGTAAATTTGATCTAAAAGATGTGTGAACAAATGAATCAGCAATTCGGTAATCAAAGCACGAGAAATTCATATTAAAAGCAGGATAAGTTGATTTTGGAGAGAAATATTCGACGAAAGCGAAAAACTATGGCGCGCACAGTACTAAATCTATCTGTGCGAAGCCTACACAACAGTCTCTGCAATGCGCCTTTAAATTGACAGTAACCTGAAATGTAAAAATTTTCTGTGATTTTTTTTCAGAAATCTCTGCGGCTGCACGCTCTCCCACAGAACAATTCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGTTCCAAGATGATTCAAATGATTCTTAAAAAATTAATTAGTGGTTATAGATTCATGTATGGTCGTTTTCCGGAAGAAAAAATGTCAAAAATGGTCATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAGAACTACTCATTCAACCTG</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCTCCAAAATCAACTTATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCAGAACTACTCATTCAACCTGCAACAGAGAAAAAAAATCGGGATAAAAACATCTGAAACTTTTCATAAATATAATTCGCAAAATTTTGGGGGAATCCCCTGCCAGTGTAATCATGCAGATAGCGAATAACCTGAATTTTAATGTGTAAATTTGATCTAAAAGATGTGTGAACAAATGAATCAGCAATTCGGTAATCAAAGCACGAGAAATTCATATTAAAAGCAGGATAAGTTGATTTTGGAGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATCAGAACTACTCATTCAACCTGCAACAGAGAAAAAAAATCGGGATAAAAACATCTGAAACTTTTCATAAATATAATTCGCAAAATTTTGGGGGAATCCCCTGCCAGTGTAATCATGCAGATAGCGAATAACYTGAATTTTAATGTGTAAATTTGATCTAAAAGATGTGTGAACAAATGAATCAGCAATTCGGTAATCAAAGCACGAGAAATTCATATTAAAAGCAGGATAAGTTGATTTTGGAGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33253</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>295497</contig_pos>
        <strand>+</strand>
        <context>AATTTCAGAA[C/T]TTTTTATCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGCGCGATCACAATTGCAGGTCTAAAACCATAAAACCATAATTTCAGAA</left_flank>
        <right_flank>TTTTTATCTGATTTTGTGGAGTTCCAAGATGATTCAAATGATTCTTAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAACCTGCAACAGAGAAAAAAAATCGGGATAAAAACATCTGAAACTTTTCATAAATATAATTCGCAAAATTTTGGGGGAATCCCCTGCCAGTGTAATCATGCAGATAGCGAATAACCTGAATTTTAATGTGTAAATTTGATCTAAAAGATGTGTGAACAAATGAATCAGCAATTCGGTAATCAAAGCACGAGAAATTCATATTAAAAGCAGGATAAGTTGATTTTGGAGAGAAATATTCGACGAAAGCGAAAAACTATGGCGCGCACAGTACTAAATCTATCTGTGCGAAGCCTACACAACAGTCTCTGCAATGCGCCTTTAAATTGACAGTAACCTGAAATGTAAAAATTTTCTGTGATTTTTTTTCAGAAATCTCTGCGGCTGCACGCTCTCCCACAGAACAATTCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGTTCCAAGATGATTCAAATGATTCTTAAAAAATTAATTAGTGGTTATAGATTCATGTATGGTCGTTTTCCGGAAGAAAAAATGTCAAAAATGGTCATTTTTGAAAGTTTTTTACAGAAAAAATCTATCTCCTCTTTCAGTTTTTGACATTTCTAGGAGTTCTATATTTCAAAAAAAAGCAATTATTTTCTCTACATTTTCTATGGATGAATTTTTAATTTGTCTGACAACACTTTTTTATAATTCAAAAACCTCATGAAATTGCACAAAATAGCATTTTTTGAGTTGTTTTTTGATTATAAAAAAAGTTTTGTCAGACGAATTAAAAATTCATCCATAGAAAATGTAGAGAAAATAATTTCGGTTTTTTTGAAATATAGAACTCCTAGAAATGTAAAAAAACTGAAAAAGGAGATAGATTTTTTCTGTAAAAAACTTTAAAAAATGACCATTTTTGACATGTTTTCTTCCGGAAAACGAC</canonical>
            <polymorphic>TTCAACCTGCAACAGAGAAAAAAAATCGGGATAAAAACATCTGAAACTTTTCATAAATATAATTCGCAAAATTTTGGGGGAATCCCCTGCCAGTGTAATCATGCAGATAGCGAATAACCTGAATTTTAATGTGTAAATTTGATCTAAAAGATGTGTGAACAAATGAATCAGCAATTCGGTAATCAAAGCACGAGAAATTCATATTAAAAGCAGGATAAGTTGATTTTGGAGAGAAATATTCGACGAAAGCGAAAAACTATGGCGCGCACAGTACTAAATCTATCTGTGCGAAGCCTACACAACAGTCTCTGCAATGCGCCTTTAAATTGACAGTAACCTGAAATGTAAAAATTTTCTGTGATTTTTTTTCAGAAATCTCTGCGGCTGCACGCTCTCCCACAGAACAATTCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAAAACCATAATTTCAGAAYTTTTTATCTGATTTTGTGGAGTTCCAAGATGATTCAAATGATTCTTAAAAAATTAATTAGTGGTTATAGATTCATGTATGGTCGTTTTCCGGAAGAAAAAATGTCAAAAATGGTCATTTTTGAAAGTTTTTTACAGAAAAAATCTATCTCCTCTTTCAGTTTTTGACATTTCTAGGAGTTCTATATTTCAAAAAAAAGCAATTATTTTCTCTACATTTTCTATGGATGAATTTTTAATTTGTCTGACAACACTTTTTTATAATTCAAAAACCTCATGAAATTGCACAAAATAGCATTTTTTGAGTTGTTTTTTGATTATAAAAAAAGTTTTGTCAGACGAATTAAAAATTCATCCATAGAAAATGTAGAGAAAATAATTTCGGTTTTTTTGAAATATAGAACTCCTAGAAATGTAAAAAAACTGAAAAAGGAGATAGATTTTTTCTGTAAAAAACTTTAAAAAATGACCATTTTTGACATGTTTTCTTCCGGAAAACGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>231 154 154 148 118 69 60 52 14</canonical_bands>
                <polymorphic_bands>379 154 154 118 69 60 52 14</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>145 129 125 61 60 56 53 52 38 37 29 29 28 25 25 23 18 14 14 9 8 7 7 4 4</canonical_bands>
                <polymorphic_bands>145 129 125 61 61 60 56 52 38 37 29 29 28 25 25 23 18 14 14 9 7 7 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTGAAATGTAAAAATTTTCTGT</pcr_primer_p1>
		<pcr_primer_p2>CGACCATACATGAATCTATAACC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCTGAAATGTAAAAATTTTCTGTGATTTTTTTTCAGAAATCTCTGCGGCTGCACGCTCTCCCACAGAACAATTCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGTTCCAAGATGATTCAAATGATTCTTAAAAAATTAATTAGTGGTTATAGATTCATGTATGGTCG</canonical_amplicon>
		<polymorphic_amplicon>CCTGAAATGTAAAAATTTTCTGTGATTTTTTTTCAGAAATCTCTGCGGCTGCACGCTCTCCCACAGAACAATTCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAAAACCATAATTTCAGAAYTTTTTATCTGATTTTGTGGAGTTCCAAGATGATTCAAATGATTCTTAAAAAATTAATTAGTGGTTATAGATTCATGTATGGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33254</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>307751</contig_pos>
        <strand>+</strand>
        <context>TGGACTTCTC[A/G]CAAGCAGCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGATCTTGGCTTGAATGCGGTGAGCGTTCTCCTTGTGGATGGACTTCTC</left_flank>
        <right_flank>CAAGCAGCTGGAACGAAGATGTCGCACTTCTCGTACATGAGCTCGGTGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCTGAGAAAAAAAAGTGTGAGACGCAGAGAAATAGTGTCTGCGTCTCCACTTAATATGCGCTATTTAGGCTCTCCGCTTCGATATCGCTACCGTATTCAGACTGCAAAAAATACTCTCTAGCCTTTTTTTCTCAGACAAGCATAATATTGCAATACGCTCAAGTGTAAAAAAGTCAGAGCATCTTTTACTCAACATTTGGAAAACTACTCGGCATCAGAGTTTTGCAGACCGGAAAAAAACATACCCAAAAGCATTTTGTTGGCCTCCTCGTCGTATTTGAAAGTGAGTCTTCCATAAGAGACATGATTCAAGTTCTTCAACCACTCGAAATATGAGACAGTTACTCCACCAGAGTTGACATACATGTCTGGGATGATGAGGCAATCTCCACGAGCGAGAAGGATCTTATCAGCAGCTGGGGTGGTTGGTCCGTTGGCGGCCTCGGCGATGATCTTGGCTTGAATGCGGTGAGCGTTCTCCTTGTGGATGGACTTCTCACAAGCAGCTGGAACGAAGATGTCGCACTTCTCGTACATGAGCTCGGTGAATGGATCAAAGTTCTTAGCTCCTGGGAAGTTCTTGATGGTTCCATTGGCGTCTCTCCAGTCCTCGAGCTCTTTCGGGTGAATACCATCTGGGTTGTAAACGGCGCAATCGTACTCTTGGATTCCGATAACCTTGGATCCAGCGCGGTGAAGGTATCTGTGAGTGTGGAGACCGACGTTTCCGAAACCTTGGATGATGGCAGTCTTTCCAGCGAGTCCAGTGTTGAGTCCAACCATCTTCATGTAGTCGGGATCATTGGTGAACACTTCAAGTCCCTTCCAGACTCCACGTCCAGTAGCGGAAACACGTCCGTGAATTCCACCGCTGACAATTGGCTTTCCTGTGATGCAAGCGGAAGCATCCTGAAACAAATCTTTGTTAGTAAAGCGTTGAAAGTAGTTTTAACTCACTCTGTCCAAATGCCCGATGGTTTGGGCGTAAGTGTCAGCGAT</canonical>
            <polymorphic>GTCTGAGAAAAAAAAGTGTGAGACGCAGAGAAATAGTGTCTGCGTCTCCACTTAATATGCGCTATTTAGGCTCTCCGCTTCGATATCGCTACCGTATTCAGACTGCAAAAAATACTCTCTAGCCTTTTTTTCTCAGACAAGCATAATATTGCAATACGCTCAAGTGTAAAAAAGTCAGAGCATCTTTTACTCAACATTTGGAAAACTACTCGGCATCAGAGTTTTGCAGACCGGAAAAAAACATACCCAAAAGCATTTTGTTGGCCTCCTCGTCGTATTTGAAAGTGAGTCTTCCATAAGAGACATGATTCAAGTTCTTCAACCACTCGAAATATGAGACAGTTACTCCACCAGAGTTGACATACATGTCTGGGATGATGAGGCAATCTCCACGAGCGAGAAGGATCTTATCAGCAGCTGGGGTGGTTGGTCCGTTGGCGGCCTCGGCGATGATCTTGGCTTGAATGCGGTGAGCGTTCTCCTTGTGGATGGACTTCTCRCAAGCAGCTGGAACGAAGATGTCGCACTTCTCGTACATGAGCTCGGTGAATGGATCAAAGTTCTTAGCTCCTGGGAAGTTCTTGATGGTTCCATTGGCGTCTCTCCAGTCCTCGAGCTCTTTCGGGTGAATACCATCTGGGTTGTAAACGGCGCAATCGTACTCTTGGATTCCGATAACCTTGGATCCAGCGCGGTGAAGGTATCTGTGAGTGTGGAGACCGACGTTTCCGAAACCTTGGATGATGGCAGTCTTTCCAGCGAGTCCAGTGTTGAGTCCAACCATCTTCATGTAGTCGGGATCATTGGTGAACACTTCAAGTCCCTTCCAGACTCCACGTCCAGTAGCGGAAACACGTCCGTGAATTCCACCGCTGACAATTGGCTTTCCTGTGATGCAAGCGGAAGCATCCTGAAACAAATCTTTGTTAGTAAAGCGTTGAAAGTAGTTTTAACTCACTCTGTCCAAATGCCCGATGGTTTGGGCGTAAGTGTCAGCGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>121 116 80 69 64 55 47 42 39 38 35 33 26 25 24 23 22 18 18 18 15 13 12 12 8 8 7 4 4 2 2</canonical_bands>
                <polymorphic_bands>121 116 80 69 64 55 47 42 39 39 38 35 33 25 24 23 22 18 18 18 15 12 12 8 8 7 4 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACTCGAAATATGAGACAGTTA</pcr_primer_p1>
		<pcr_primer_p2>AGCTAAGAACTTTGATCCATTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCACTCGAAATATGAGACAGTTACTCCACCAGAGTTGACATACATGTCTGGGATGATGAGGCAATCTCCACGAGCGAGAAGGATCTTATCAGCAGCTGGGGTGGTTGGTCCGTTGGCGGCCTCGGCGATGATCTTGGCTTGAATGCGGTGAGCGTTCTCCTTGTGGATGGACTTCTCACAAGCAGCTGGAACGAAGATGTCGCACTTCTCGTACATGAGCTCGGTGAATGGATCAAAGTTCTTAGCT</canonical_amplicon>
		<polymorphic_amplicon>CCACTCGAAATATGAGACAGTTACTCCACCAGAGTTGACATACATGTCTGGGATGATGAGGCAATCTCCACGAGCGAGAAGGATCTTATCAGCAGCTGGGGTGGTTGGTCCGTTGGCGGCCTCGGCGATGATCTTGGCTTGAATGCGGTGAGCGTTCTCCTTGTGGATGGACTTCTCRCAAGCAGCTGGAACGAAGATGTCGCACTTCTCGTACATGAGCTCGGTGAATGGATCAAAGTTCTTAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33255</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>330912</contig_pos>
        <strand>+</strand>
        <context>GCCAAACGTT[C/T]TCAAATTCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAACTTATAAAGTTACAGTAAGTCAATCAGTTTAAATCTGGCCAAACGTT</left_flank>
        <right_flank>TCAAATTCATAGACCCAATACTCGAATTATGAAGCTCAACAAAGTTCGGT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCTCGGATATATAAATATCTAGTAGTAACTACTAGATATTTATATAAATATCTAGTAGTTTTTCGATTTTTCGTGACTACACACTTCAAATATCAGTTTCAAAATTTTCAGCTTCCAAGTTAATCACATTCTTTGTTTCTCCAGGACAACCACAACAAACTTCTGCGAAAAAACTCAATAATCACCTGCTCAAGTCTCTTTTTCTGAATCATTCTTCCTAGTTTTGTTAACGATTTCTAGAATGAATTATCTCATTCTTTTCATAATTCTTCCTGTCGTATTTGCCATACAAGTTCACAACCATATCGGATTCATTCGTTTCTCCAAACCAGTCCCTGATTTTTTATCATCTCTGTCTCTCAAGGCTCAATATGACTACAAAGTGATCTTGGAGAATGAAACAATTCCGATCAACACAAAAACTGCCGAATTCCAAAAATGGGCAACAACTTATAAAGTTACAGTAAGTCAATCAGTTTAAATCTGGCCAAACGTTTTCAAATTCATAGACCCAATACTCGAATTATGAAGCTCAACAAAGTTCGGTCAAAAGTGAAATGGAGAAGAACGTCACTCAGTTGATTTCTGAGTTGTCTCTCGTAAACTCTCAAATGTTCAAAATTCTTCAAAACGACACCTTGAGCATCGAAGAACAAAGAGAGGAAGTGAATGAGCTGGCTGAGCAATATTCAAAAGTGATTGATTTATGGACGACTGAAAAACCAATTCATATTTTTCCCTTTAGGAAATCCCAACCCTTCTGTTCATTCGTCGTCTCTTCAATCCTCAGGATGACGTCTCAAACAAACAATCCATTGTCTGATCTTTTCTCTGCGTCTCGTTTGTCTCTCTGTTGCTCTATAAACTGTGACAAAGTACTTTTTTCAAGATTCTCAAAATTGTATCGGTCTATCCACCGGAAAAGTTAGAATATTGTACTTCCGCTTTTTTCAAGTTTACATATCGAATTAACAAAAAACAACCGTTCCTAAATAGA</canonical>
            <polymorphic>TTTCCTCGGATATATAAATATCTAGTAGTAACTACTAGATATTTATATAAATATCTAGTAGTTTTTCGATTTTTCGTGACTACACACTTCAAATATCAGTTTCAAAATTTTCAGCTTCCAAGTTAATCACATTCTTTGTTTCTCCAGGACAACCACAACAAACTTCTGCGAAAAAACTCAATAATCACCTGCTCAAGTCTCTTTTTCTGAATCATTCTTCCTAGTTTTGTTAACGATTTCTAGAATGAATTATCTCATTCTTTTCATAATTCTTCCTGTCGTATTTGCCATACAAGTTCACAACCATATCGGATTCATTCGTTTCTCCAAACCAGTCCCTGATTTTTTATCATCTCTGTCTCTCAAGGCTCAATATGACTACAAAGTGATCTTGGAGAATGAAACAATTCCGATCAACACAAAAACTGCCGAATTCCAAAAATGGGCAACAACTTATAAAGTTACAGTAAGTCAATCAGTTTAAATCTGGCCAAACGTTYTCAAATTCATAGACCCAATACTCGAATTATGAAGCTCAACAAAGTTCGGTCAAAAGTGAAATGGAGAAGAACGTCACTCAGTTGATTTCTGAGTTGTCTCTCGTAAACTCTCAAATGTTCAAAATTCTTCAAAACGACACCTTGAGCATCGAAGAACAAAGAGAGGAAGTGAATGAGCTGGCTGAGCAATATTCAAAAGTGATTGATTTATGGACGACTGAAAAACCAATTCATATTTTTCCCTTTAGGAAATCCCAACCCTTCTGTTCATTCGTCGTCTCTTCAATCCTCAGGATGACGTCTCAAACAAACAATCCATTGTCTGATCTTTTCTCTGCGTCTCGTTTGTCTCTCTGTTGCTCTATAAACTGTGACAAAGTACTTTTTTCAAGATTCTCAAAATTGTATCGGTCTATCCACCGGAAAAGTTAGAATATTGTACTTCCGCTTTTTTCAAGTTTACATATCGAATTAACAAAAAACAACCGTTCCTAAATAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGCTCAATATGACTACAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>TTTGAGAGTTTACGAGAGACAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGCTCAATATGACTACAAAGTGATCTTGGAGAATGAAACAATTCCGATCAACACAAAAACTGCCGAATTCCAAAAATGGGCAACAACTTATAAAGTTACAGTAAGTCAATCAGTTTAAATCTGGCCAAACGTTTTCAAATTCATAGACCCAATACTCGAATTATGAAGCTCAACAAAGTTCGGTCAAAAGTGAAATGGAGAAGAACGTCACTCAGTTGATTTCTGAGTTGTCTCTCGTAAACTCTCAAA</canonical_amplicon>
		<polymorphic_amplicon>AGGCTCAATATGACTACAAAGTGATCTTGGAGAATGAAACAATTCCGATCAACACAAAAACTGCCGAATTCCAAAAATGGGCAACAACTTATAAAGTTACAGTAAGTCAATCAGTTTAAATCTGGCCAAACGTTYTCAAATTCATAGACCCAATACTCGAATTATGAAGCTCAACAAAGTTCGGTCAAAAGTGAAATGGAGAAGAACGTCACTCAGTTGATTTCTGAGTTGTCTCTCGTAAACTCTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33256</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>336004</contig_pos>
        <strand>+</strand>
        <context>TCGGCCGACG[A/G]TCAGAAGAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCGGATAGAGACGATGATAAGAGAAATGAATGGCAACAATCGGCCGACG</left_flank>
        <right_flank>TCAGAAGAGGTCCATCTGGAATTTCGAATTCGAATTTGATGAGAGATCGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTCAAAATTAAGTTTTTAGATTGACCTTATTGTTTCTCAATCTTCTCATCTCGTCAGTCTTGCTCAATTAGAAAGGCTCAAAATAATGCAAACTCTTCGAGGAAAACGTCAGAAACGACCATCTTCGTTCCATGGACACAGCAGTACCGATCGAAATGTAAGTCAGAAATCATTGCGACAATAAAAAAAATACCTTCAGGTTCGGCAAAACTTGAGTTTCTACTTGCCACTGAAACTGCATGGGTCTCGAGTGGAAAACTCAAGACGAACTGTGAAAAAGAATTCGATAGTTGGCAGCGACAGAAACATCGAAGAAGAATTCTTAAAGTTATTCTCCTACTCGAAAGGTTTGATCGTTCAATTGTCGGTTTTGAAATTACGACGTAATTTCAGACGTTTCAATAGAACTCGCTGCAAACTCTGGAGTGCCAGAAAGAAGAGCAACTAATCGGATAGAGACGATGATAAGAGAAATGAATGGCAACAATCGGCCGACGATCAGAAGAGGTCCATCTGGAATTTCGAATTCGAATTTGATGAGAGATCGGGTTACAAGAGAAGTACCGAGTAATAGAAGACCGATTAGTCTGGTGGAAACAGAAGAAAGAAGGATTCGAAGAAATGAAGAAACAAGGAGAAGTATCAAATTCATGAAGACAAATAGCATTGATCATGGATACAATGCTTACGAACCACCGCAGAGATTCATGAATACGACTACAGTGACGGCATCTCAAGATGTTTCGAATAATGTTCACAGTCCTCATAATACTCCCGTCTTCACCAGAAAAATTATCATTCCAGTCAGGGGAAATGCTTATGATATTGTGCCAGAAGGAACAACTGCCAACATCGTTCCAGCAAGTATTCCTCAAATGGGAAGAGTACGAAAATTGGAAAGAGCATTCTCTGCAGAGAGTAGGAATACTGTAGATTCTCTGCACGACAGAGAAGAACGAAGAGAACGAAGAGAACATGGGGAAGGTGTGGAAAGGAGA</canonical>
            <polymorphic>AATTCAAAATTAAGTTTTTAGATTGACCTTATTGTTTCTCAATCTTCTCATCTCGTCAGTCTTGCTCAATTAGAAAGGCTCAAAATAATGCAAACTCTTCGAGGAAAACGTCAGAAACGACCATCTTCGTTCCATGGACACAGCAGTACCGATCGAAATGTAAGTCAGAAATCATTGCGACAATAAAAAAAATACCTTCAGGTTCGGCAAAACTTGAGTTTCTACTTGCCACTGAAACTGCATGGGTCTCGAGTGGAAAACTCAAGACGAACTGTGAAAAAGAATTCGATAGTTGGCAGCGACAGAAACATCGAAGAAGAATTCTTAAAGTTATTCTCCTACTCGAAAGGTTTGATCGTTCAATTGTCGGTTTTGAAATTACGACGTAATTTCAGACGTTTCAATAGAACTCGCTGCAAACTCTGGAGTGCCAGAAAGAAGAGCAACTAATCGGATAGAGACGATGATAAGAGAAATGAATGGCAACAATCGGCCGACGRTCAGAAGAGGTCCATCTGGAATTTCGAATTCGAATTTGATGAGAGATCGGGTTACAAGAGAAGTACCGAGTAATAGAAGACCGATTAGTCTGGTGGAAACAGAAGAAAGAAGGATTCGAAGAAATGAAGAAACAAGGAGAAGTATCAAATTCATGAAGACAAATAGCATTGATCATGGATACAATGCTTACGAACCACCGCAGAGATTCATGAATACGACTACAGTGACGGCATCTCAAGATGTTTCGAATAATGTTCACAGTCCTCATAATACTCCCGTCTTCACCAGAAAAATTATCATTCCAGTCAGGGGAAATGCTTATGATATTGTGCCAGAAGGAACAACTGCCAACATCGTTCCAGCAAGTATTCCTCAAATGGGAAGAGTACGAAAATTGGAAAGAGCATTCTCTGCAGAGAGTAGGAATACTGTAGATTCTCTGCACGACAGAGAAGAACGAAGAGAACGAAGAGAACATGGGGAAGGTGTGGAAAGGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>330 203 150 145 126 46</canonical_bands>
                <polymorphic_bands>330 203 191 150 126</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTATTCTCCTACTCGAAAGGTT</pcr_primer_p1>
		<pcr_primer_p2>CTTCTATTACTCGGTACTTCTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTATTCTCCTACTCGAAAGGTTTGATCGTTCAATTGTCGGTTTTGAAATTACGACGTAATTTCAGACGTTTCAATAGAACTCGCTGCAAACTCTGGAGTGCCAGAAAGAAGAGCAACTAATCGGATAGAGACGATGATAAGAGAAATGAATGGCAACAATCGGCCGACGATCAGAAGAGGTCCATCTGGAATTTCGAATTCGAATTTGATGAGAGATCGGGTTACAAGAGAAGTACCGAGTAATAGAAG</canonical_amplicon>
		<polymorphic_amplicon>GTTATTCTCCTACTCGAAAGGTTTGATCGTTCAATTGTCGGTTTTGAAATTACGACGTAATTTCAGACGTTTCAATAGAACTCGCTGCAAACTCTGGAGTGCCAGAAAGAAGAGCAACTAATCGGATAGAGACGATGATAAGAGAAATGAATGGCAACAATCGGCCGACGRTCAGAAGAGGTCCATCTGGAATTTCGAATTCGAATTTGATGAGAGATCGGGTTACAAGAGAAGTACCGAGTAATAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33257</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>353212</contig_pos>
        <strand>+</strand>
        <context>GTTTCCGATA[C/T]CTAGAGATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTGGAAAAATGTGACTTTGTATATCAAAACTGGATGTGGGTTTCCGATA</left_flank>
        <right_flank>CTAGAGATTCCCGTCTTTGACTGTTCACTTAAACGATTTTCGGATAAATT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAAATCTTACGTTCAACTTGGAGACCAACATTAAGACATCTCATCCAACGACATTTTTGACATGTGGTCTTTCGTGAGACTGCTAAAAACATGGTTGTTTGTAACTGATCTATGCCTAGGTGATACTTACTATTCAACGGGCAACTGTTTGTTCCTCTTCTGCATACGAAGGTCTTCTTGACCGATACACTTCGTCGGAAGAATGCTGCACATGCTCGGCAGATCTGAAATTTTCTACTTGAAAAAATTTAAAATAAATCTTCGTCTTTAATTATTCGCAATTTTTAAGAGCGATCTTTATCCCGAAGAACAAAAAGCTGCCGTCGGATTCATTCGCTAGAGAATTCCGTTTTGTAAAATAATGAACCGGTTTCCAGATAGATCATGATACGGCTCAAAATCTCCAGCGGAACAAAAGGATACATTTTGTGTCTTTGCAGAACAAAAAGTGGAAAAATGTGACTTTGTATATCAAAACTGGATGTGGGTTTCCGATATCTAGAGATTCCCGTCTTTGACTGTTCACTTAAACGATTTTCGGATAAATTACTAATTTGAATGTACTAGTTCTCTATCGCATAACTATTCCCAGACACTATTTTATTATGGGTTATCCATATGCATATTTTTTTACCTAAAAGATATTCCAATGGGAGCTCGGGTAAGATTCAAATCAGATCCCATTTTCCATCAGAGGGCGGACTTTGTATCGGTGTGTGCTAATCTACCGATACAATGTTCGACAACAAAAAGTTTCTCCAAGAAACGGTAGATGAATATCTAGACATCAGCACCACTTTTCTTGCCTCTCCCTCCCTCACCCACTTCGCCTTTCCTGATTTCCTCATTTGATAACTTACGTCGATTCCGAAATGTTGGGATCCATCGTATTGCCTTTCGCAGACTCGGCAATGAATGTCGGAAGCCGAGACTACATTTGGGCTTGTTGATGTTCCAGGAATCGATAGAGGAGAAGTCGGGTGTCTCCTGAAAATACA</canonical>
            <polymorphic>ATAAAATCTTACGTTCAACTTGGAGACCAACATTAAGACATCTCATCCAACGACATTTTTGACATGTGGTCTTTCGTGAGACTGCTAAAAACATGGTTGTTTGTAACTGATCTATGCCTAGGTGATACTTACTATTCAACGGGCAACTGTTTGTTCCTCTTCTGCATACGAAGGTCTTCTTGACCGATACACTTCGTCGGAAGAATGCTGCACATGCTCGGCAGATCTGAAATTTTCTACTTGAAAAAATTTAAAATAAATCTTCGTCTTTAATTATTCGCAATTTTTAAGAGCGATCTTTATCCCGAAGAACAAAAAGCTGCCGTCGGATTCATTCGCTAGAGAATTCCGTTTTGTAAAATAATGAACCGGTTTCCAGATAGATCATGATACGGCTCAAAATCTCCAGCGGAACAAAAGGATACATTTTGTGTCTTTGCAGAACAAAAAGTGGAAAAATGTGACTTTGTATATCAAAACTGGATGTGGGTTTCCGATAYCTAGAGATTCCCGTCTTTGACTGTTCACTTAAACGATTTTCGGATAAATTACTAATTTGAATGTACTAGTTCTCTATCGCATAACTATTCCCAGACACTATTTTATTATGGGTTATCCATATGCATATTTTTTTACCTAAAAGATATTCCAATGGGAGCTCGGGTAAGATTCAAATCAGATCCCATTTTCCATCAGAGGGCGGACTTTGTATCGGTGTGTGCTAATCTACCGATACAATGTTCGACAACAAAAAGTTTCTCCAAGAAACGGTAGATGAATATCTAGACATCAGCACCACTTTTCTTGCCTCTCCCTCCCTCACCCACTTCGCCTTTCCTGATTTCCTCATTTGATAACTTACGTCGATTCCGAAATGTTGGGATCCATCGTATTGCCTTTCGCAGACTCGGCAATGAATGTCGGAAGCCGAGACTACATTTGGGCTTGTTGATGTTCCAGGAATCGATAGAGGAGAAGTCGGGTGTCTCCTGAAAATACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>282 152 125 115 104 75 72 54 11 10</canonical_bands>
                <polymorphic_bands>397 152 125 104 75 72 54 11 10</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 282 218</canonical_bands>
                <polymorphic_bands>782 218</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAACAAAAAGTGGAAAAATGT</pcr_primer_p1>
		<pcr_primer_p2>ATGGGATCTGATTTGAATCTTAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAACAAAAAGTGGAAAAATGTGACTTTGTATATCAAAACTGGATGTGGGTTTCCGATATCTAGAGATTCCCGTCTTTGACTGTTCACTTAAACGATTTTCGGATAAATTACTAATTTGAATGTACTAGTTCTCTATCGCATAACTATTCCCAGACACTATTTTATTATGGGTTATCCATATGCATATTTTTTTACCTAAAAGATATTCCAATGGGAGCTCGGGTAAGATTCAAATCAGATCCCAT</canonical_amplicon>
		<polymorphic_amplicon>AGAACAAAAAGTGGAAAAATGTGACTTTGTATATCAAAACTGGATGTGGGTTTCCGATAYCTAGAGATTCCCGTCTTTGACTGTTCACTTAAACGATTTTCGGATAAATTACTAATTTGAATGTACTAGTTCTCTATCGCATAACTATTCCCAGACACTATTTTATTATGGGTTATCCATATGCATATTTTTTTACCTAAAAGATATTCCAATGGGAGCTCGGGTAAGATTCAAATCAGATCCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33258</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>368916</contig_pos>
        <strand>+</strand>
        <context>TGGCTATCCA[C/T]GCGAAATGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTGCGCATCGACCTCATTGCTTTTCACTTTTTGCAAACATGGCTATCCA</left_flank>
        <right_flank>GCGAAATGACTATGGATTCACGATGACCACATTCCTCGGATTGAATGGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGATCGGTGGTCCGATGATGGGACCGCCGGTCCCGTTTTGAGACCGTTTTTCCCGGATAGAGCCGAAGTTCTCAAGATATTTCAAAGTTATTGGCAGAAAGGAAGATGAAGTAAAATGTTGGATGATTTTGAACGTCAGAATCTTAAAATTTTAGGATCTAAAAACATTTTCAAAAAAACATTGGTGAACATCGGAATATGGTGAACATCGGAATATCATATTAAAACCATGGAATTTGTTAAATCTTGCGAAGCGTTTTAATTGCGAAACGTCTCAGTGTACTGTGTGTAGAAACAGAATTTTGACACTTTCTCATCTTATTGTTCATTTTGAAAGCATATACTTTTTGCAATGATTCGTGGATAACCCCTATTCAGCTGACCGTTCTATGGCATCCAGTTACTTTCAACCGAATGGGGATGTCTATTTAACCAAAAACGGAAAACCGGTGCGCATCGACCTCATTGCTTTTCACTTTTTGCAAACATGGCTATCCATGCGAAATGACTATGGATTCACGATGACCACATTCCTCGGATTGAATGGTTTCAGATTGAAAAAAGAACGAAATGGAGTGTCAAGAAAAGGATGAAGAATGACCTTGTGAATTGTTGTATGTTTTGTAAATGGAAAAGGCTTTGTGGGAGCGATTTGAGGGGAGAGAAGAGTCCGAGAAAAAGATTATGTCACAAAACAGGGAATGAAACGATAGAAATGACCAAAACCGATTGCTTTCTTCTTTTTCTTTTCGTATCGTCTACCGGAGAAGGAGGAGGAGGTCAGATCAAGGGATTCAAAAGGCTAAACTGTTGGAGAAGACACAAAAAGACATGGTTAAGTAAACGAAAACGTCATTTTTCGAAGAAAATAAAAGGTGCGAAATGACTTTAGTACAGTTTAATGGTTCAAGTTATCTAAATGTAAACGTAAAACGGTTTCGAACTAAATAAGAACCAATTTCAATTGGAAGGAAGAAACTGTGAGAAAAGGTAGCGATT</canonical>
            <polymorphic>GGGATCGGTGGTCCGATGATGGGACCGCCGGTCCCGTTTTGAGACCGTTTTTCCCGGATAGAGCCGAAGTTCTCAAGATATTTCAAAGTTATTGGCAGAAAGGAAGATGAAGTAAAATGTTGGATGATTTTGAACGTCAGAATCTTAAAATTTTAGGATCTAAAAACATTTTCAAAAAAACATTGGTGAACATCGGAATATGGTGAACATCGGAATATCATATTAAAACCATGGAATTTGTTAAATCTTGCGAAGCGTTTTAATTGCGAAACGTCTCAGTGTACTGTGTGTAGAAACAGAATTTTGACACTTTCTCATCTTATTGTTCATTTTGAAAGCATATACTTTTTGCAATGATTCGTGGATAACCCCTATTCAGCTGACCGTTCTATGGCATCCAGTTACTTTCAACCGAATGGGGATGTCTATTTAACCAAAAACGGAAAACCGGTGCGCATCGACCTCATTGCTTTTCACTTTTTGCAAACATGGCTATCCAYGCGAAATGACTATGGATTCACGATGACCACATTCCTCGGATTGAATGGTTTCAGATTGAAAAAAGAACGAAATGGAGTGTCAAGAAAAGGATGAAGAATGACCTTGTGAATTGTTGTATGTTTTGTAAATGGAAAAGGCTTTGTGGGAGCGATTTGAGGGGAGAGAAGAGTCCGAGAAAAAGATTATGTCACAAAACAGGGAATGAAACGATAGAAATGACCAAAACCGATTGCTTTCTTCTTTTTCTTTTCGTATCGTCTACCGGAGAAGGAGGAGGAGGTCAGATCAAGGGATTCAAAAGGCTAAACTGTTGGAGAAGACACAAAAAGACATGGTTAAGTAAACGAAAACGTCATTTTTCGAAGAAAATAAAAGGTGCGAAATGACTTTAGTACAGTTTAATGGTTCAAGTTATCTAAATGTAAACGTAAAACGGTTTCGAACTAAATAAGAACCAATTTCAATTGGAAGGAAGAAACTGTGAGAAAAGGTAGCGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>334 258 230 168 10</canonical_bands>
                <polymorphic_bands>344 258 230 168</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCTATGGCATCCAGTTACTT</pcr_primer_p1>
		<pcr_primer_p2>TTCCATTTACAAAACATACAACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTCTATGGCATCCAGTTACTTTCAACCGAATGGGGATGTCTATTTAACCAAAAACGGAAAACCGGTGCGCATCGACCTCATTGCTTTTCACTTTTTGCAAACATGGCTATCCATGCGAAATGACTATGGATTCACGATGACCACATTCCTCGGATTGAATGGTTTCAGATTGAAAAAAGAACGAAATGGAGTGTCAAGAAAAGGATGAAGAATGACCTTGTGAATTGTTGTATGTTTTGTAAATGGAA</canonical_amplicon>
		<polymorphic_amplicon>GTTCTATGGCATCCAGTTACTTTCAACCGAATGGGGATGTCTATTTAACCAAAAACGGAAAACCGGTGCGCATCGACCTCATTGCTTTTCACTTTTTGCAAACATGGCTATCCAYGCGAAATGACTATGGATTCACGATGACCACATTCCTCGGATTGAATGGTTTCAGATTGAAAAAAGAACGAAATGGAGTGTCAAGAAAAGGATGAAGAATGACCTTGTGAATTGTTGTATGTTTTGTAAATGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33259</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>439302</contig_pos>
        <strand>+</strand>
        <context>TCCATTATCT[A/G]TCAAACGAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAACAAATGAATAGGTGTATTCAATATGCACATGAAGTTCTCCATTATCT</left_flank>
        <right_flank>TCAAACGAACTGTTCCATTTCCAGGTCCAATGCACCGACCATCACTCTCT</right_flank>
        <qual_score>146</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTTTTTTGTGATACGTTTTCCTAAAATTTGAACAAGAATCAACCAAACTTCTTGATGAAAGTTTTCGGAAAAAGAGCGAATAAGTAAAAGGCCTTGGAACAATATCAGGTCCATCTAATACAGGTTTTACAGTAAACCCAGTTGACCAAACTCAAAAAAACACATACAATGAAGATCAAACCATCTCAAATCCTTGCGATCAATGCAAACTTTTTCCAAATAAGGAAGAATCATTGAAAGATCGTTGTGGGAAAAGTGACGAGAGCGTATCATAAAAGTGACATCATGTTGAATACAAGTTCCGTTTGGAGCGCGACGGAAACACCAATAAAGAACTGCTCTCTGGTTGTCCAGGTAGAGAATTTGAAATTTGACTGTGAGAATGGATTTAAAAGATTCTAGTCAAATTTCTGAAAACTCACATTTGATAGAGCTTTTATAACCTGGAACAAATGAATAGGTGTATTCAATATGCACATGAAGTTCTCCATTATCTATCAAACGAACTGTTCCATTTCCAGGTCCAATGCACCGACCATCACTCTCTTTTTGAGCATAATAAATCAACTCCAGATCCGAACTATTCTGTATTCTTCTCATATTTATAACTGTAGACTGTAGAAACATTTTTGGGTCGGCATTCAGGTCAGCAGCGATGTACCAAACGCCGTGGAGCATTGATAAAGTGATTGGACTCCATCCATTTGGAGATTGACAATGAAGAAGACTTGGTGTTGGGGATGGAATGATACATTCATCTGAAACCACTAGAGTTTTAATTTGAAAAAAAAGATTTTTTAAGTTTACGGAAAGTGTTCAGAAAGATGAGATCGGTTGGATCGATGCAAACTTTCTGAAGTTCCCTATAGATTTCATTTATAGTTGGTTGATCCATATGATCCTCATCCGACCAAACATAGACTCTCACAGAGTCACACGCTCCGTCATCATCAACAAGACCACAGTGCATTGATATGTATTCGTCTCCATTTTCCCA</canonical>
            <polymorphic>GTTTTTTTTTGTGATACGTTTTCCTAAAATTTGAACAAGAATCAACCAAACTTCTTGATGAAAGTTTTCGGAAAAAGAGCGAATAAGTAAAAGGCCTTGGAACAATATCAGGTCCATCTAATACAGGTTTTACAGTAAACCCAGTTGACCAAACTCAAAAAAACACATACAATGAAGATCAAACCATCTCAAATCCTTGCGATCAATGCAAACTTTTTCCAAATAAGGAAGAATCATTGAAAGATCGTTGTGGGAAAAGTGACGAGAGCGTATCATAAAAGTGACATCATGTTGAATACAAGTTCCGTTTGGAGCGCGACGGAAACACCAATAAAGAACTGCTCTCTGGTTGTCCAGGTAGAGAATTTGAAATTTGACTGTGAGAATGGATTTAAAAGATTCTAGTCAAATTTCTGAAAACTCACATTTGATAGAGCTTTTATAACCTGGAACAAATGAATAGGTGTATTCAATATGCACATGAAGTTCTCCATTATCTRTCAAACGAACTGTTCCATTTCCAGGTCCAATGCACCGACCATCACTCTCTTTTTGAGCATAATAAATCAACTCCAGATCCGAACTATTCTGTATTCTTCTCATATTTATAACTGTAGACTGTAGAAACATTTTTGGGTCGGCATTCAGGTCAGCAGCGATGTACCAAACGCCGTGGAGCATTGATAAAGTGATTGGACTCCATCCATTTGGAGATTGACAATGAAGAAGACTTGGTGTTGGGGATGGAATGATACATTCATCTGAAACCACTAGAGTTTTAATTTGAAAAAAAAGATTTTTTAAGTTTACGGAAAGTGTTCAGAAAGATGAGATCGGTTGGATCGATGCAAACTTTCTGAAGTTCCCTATAGATTTCATTTATAGTTGGTTGATCCATATGATCCTCATCCGACCAAACATAGACTCTCACAGAGTCACACGCTCCGTCATCATCAACAAGACCACAGTGCATTGATATGTATTCGTCTCCATTTTCCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACCAATAAAGAACTGCTCTC</pcr_primer_p1>
		<pcr_primer_p2>GGAGTTGATTTATTATGCTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACACCAATAAAGAACTGCTCTCTGGTTGTCCAGGTAGAGAATTTGAAATTTGACTGTGAGAATGGATTTAAAAGATTCTAGTCAAATTTCTGAAAACTCACATTTGATAGAGCTTTTATAACCTGGAACAAATGAATAGGTGTATTCAATATGCACATGAAGTTCTCCATTATCTATCAAACGAACTGTTCCATTTCCAGGTCCAATGCACCGACCATCACTCTCTTTTTGAGCATAATAAATCAACTCC</canonical_amplicon>
		<polymorphic_amplicon>ACACCAATAAAGAACTGCTCTCTGGTTGTCCAGGTAGAGAATTTGAAATTTGACTGTGAGAATGGATTTAAAAGATTCTAGTCAAATTTCTGAAAACTCACATTTGATAGAGCTTTTATAACCTGGAACAAATGAATAGGTGTATTCAATATGCACATGAAGTTCTCCATTATCTRTCAAACGAACTGTTCCATTTCCAGGTCCAATGCACCGACCATCACTCTCTTTTTGAGCATAATAAATCAACTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33260</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>487947</contig_pos>
        <strand>+</strand>
        <context>ACTTAGTGGA[G/T]GTATTTCACA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGGAAGAGCGTCTGAATACATTTGTTGCTGAAAATGGACCACTTAGTGGA</left_flank>
        <right_flank>GTATTTCACAGCAATCAGGTCGAGATGAAGCTGATTCGAATGATGATATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGGTCAGAAGATAGCTGTTTTGTCTTAGTTTTTAACGATTATTATTTACTGACTACTTCTATTTCAAAAATGAGCAACACAATATTCCGAAGACCTCTTCTAGTCAAACTTCGTTATCGATCCCTTCAGAGTCAATATTCATCGTCTGAACAAATTGGCGAAATGCTCGAACAGACACGGATATCAGGTCCAGTTCGTCAGAATTCTTCAAGATTTGACAGCAATGATTCATATGATGATATGGCATCACAACAGCAGGCAGCTGCACAGAATGCATTTTTGAATCGACCGAGGAGTCGGAGTTTAACGTAAGATATAGGTTAGTAGATACTTTAGATTAATTCCTTTATTTTCAGAAGTCCTATGAAGTTTCTCAATGAATATAACATAGAAATGGTGAATCGAACAAGTGTGTATAAAGAAAGATTCCCTCGAGCGAAACTGCAAATGGAAGAGCGTCTGAATACATTTGTTGCTGAAAATGGACCACTTAGTGGAGGTATTTCACAGCAATCAGGTCGAGATGAAGCTGATTCGAATGATGATATGGTTACTAAACAATCTGGAAGTGGTAGTGGACTGAAACCGAAAGACAGCGTTGAAGAAGCAGTGATGAGAAGTCGACGATCAACTGTGAGTTTGGGTTTTGAGGGAAATTAGATTCTTGGTTGCTCCGGTTCGTCTGAATCCATGGGATCTGCTCAAATGTGTTTACTTGTTTTCTATTAACACACAATAAGAAGATATAACTCAATTTTTGAAAAGCTACGCTTTTTCTAATTCAATTCATCTCGTTTCCTTCTCCTTGGATAGATTTGAGTCCCGTTTTCAAACCGACTTACATTCCCATGTGCTTCTTCCATTTTCTATTTTTCTGATCCATTCATCACTCTCTCCCTTGTTCCCTCCAAATAATTTTTTTTTATTTTTCCTCGATACTTTCGAATGAAAAATGACCTCATCTTCGTTCTTTCTAAAAGAAGAAACGGCGAGTAGTGA</canonical>
            <polymorphic>GCGGTCAGAAGATAGCTGTTTTGTCTTAGTTTTTAACGATTATTATTTACTGACTACTTCTATTTCAAAAATGAGCAACACAATATTCCGAAGACCTCTTCTAGTCAAACTTCGTTATCGATCCCTTCAGAGTCAATATTCATCGTCTGAACAAATTGGCGAAATGCTCGAACAGACACGGATATCAGGTCCAGTTCGTCAGAATTCTTCAAGATTTGACAGCAATGATTCATATGATGATATGGCATCACAACAGCAGGCAGCTGCACAGAATGCATTTTTGAATCGACCGAGGAGTCGGAGTTTAACGTAAGATATAGGTTAGTAGATACTTTAGATTAATTCCTTTATTTTCAGAAGTCCTATGAAGTTTCTCAATGAATATAACATAGAAATGGTGAATCGAACAAGTGTGTATAAAGAAAGATTCCCTCGAGCGAAACTGCAAATGGAAGAGCGTCTGAATACATTTGTTGCTGAAAATGGACCACTTAGTGGAKGTATTTCACAGCAATCAGGTCGAGATGAAGCTGATTCGAATGATGATATGGTTACTAAACAATCTGGAAGTGGTAGTGGACTGAAACCGAAAGACAGCGTTGAAGAAGCAGTGATGAGAAGTCGACGATCAACTGTGAGTTTGGGTTTTGAGGGAAATTAGATTCTTGGTTGCTCCGGTTCGTCTGAATCCATGGGATCTGCTCAAATGTGTTTACTTGTTTTCTATTAACACACAATAAGAAGATATAACTCAATTTTTGAAAAGCTACGCTTTTTCTAATTCAATTCATCTCGTTTCCTTCTCCTTGGATAGATTTGAGTCCCGTTTTCAAACCGACTTACATTCCCATGTGCTTCTTCCATTTTCTATTTTTCTGATCCATTCATCACTCTCTCCCTTGTTCCCTCCAAATAATTTTTTTTTATTTTTCCTCGATACTTTCGAATGAAAAATGACCTCATCTTCGTTCTTTCTAAAAGAAGAAACGGCGAGTAGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCCTTTATTTTCAGAAGTCC</pcr_primer_p1>
		<pcr_primer_p2>GGTTTCAGTCCACTACCACTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATTCCTTTATTTTCAGAAGTCCTATGAAGTTTCTCAATGAATATAACATAGAAATGGTGAATCGAACAAGTGTGTATAAAGAAAGATTCCCTCGAGCGAAACTGCAAATGGAAGAGCGTCTGAATACATTTGTTGCTGAAAATGGACCACTTAGTGGAGGTATTTCACAGCAATCAGGTCGAGATGAAGCTGATTCGAATGATGATATGGTTACTAAACAATCTGGAAGTGGTAGTGGACTGAAACC</canonical_amplicon>
		<polymorphic_amplicon>AATTCCTTTATTTTCAGAAGTCCTATGAAGTTTCTCAATGAATATAACATAGAAATGGTGAATCGAACAAGTGTGTATAAAGAAAGATTCCCTCGAGCGAAACTGCAAATGGAAGAGCGTCTGAATACATTTGTTGCTGAAAATGGACCACTTAGTGGAKGTATTTCACAGCAATCAGGTCGAGATGAAGCTGATTCGAATGATGATATGGTTACTAAACAATCTGGAAGTGGTAGTGGACTGAAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33261</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>488465</contig_pos>
        <strand>+</strand>
        <context>GTTTTCGAGG[C/T]ACGGGCGCCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTCTTTCTAAAAGAAGAAACGGCGAGTAGTGAATGATGAGTTTTCGAGG</left_flank>
        <right_flank>ACGGGCGCCGCAATTTTTCGAAAAAAAAGTGTACACTTTCCTGGTCTTCT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCGAGATGAAGCTGATTCGAATGATGATATGGTTACTAAACAATCTGGAAGTGGTAGTGGACTGAAACCGAAAGACAGCGTTGAAGAAGCAGTGATGAGAAGTCGACGATCAACTGTGAGTTTGGGTTTTGAGGGAAATTAGATTCTTGGTTGCTCCGGTTCGTCTGAATCCATGGGATCTGCTCAAATGTGTTTACTTGTTTTCTATTAACACACAATAAGAAGATATAACTCAATTTTTGAAAAGCTACGCTTTTTCTAATTCAATTCATCTCGTTTCCTTCTCCTTGGATAGATTTGAGTCCCGTTTTCAAACCGACTTACATTCCCATGTGCTTCTTCCATTTTCTATTTTTCTGATCCATTCATCACTCTCTCCCTTGTTCCCTCCAAATAATTTTTTTTTATTTTTCCTCGATACTTTCGAATGAAAAATGACCTCATCTTCGTTCTTTCTAAAAGAAGAAACGGCGAGTAGTGAATGATGAGTTTTCGAGGCACGGGCGCCGCAATTTTTCGAAAAAAAAGTGTACACTTTCCTGGTCTTCTTTGGTTTCTGTGGCCTCCACATGATGGCAAGGTTCTGTGACAGGTGCAAAAGCACAACACAAGCCACCTGTTTGCTTTGTTCGTTTTTTAAAAAAATTCCAAGGAAGTTATTGTTACTTTTGTGTGCCAGGAACACTTCTAGCATCTCTCTGTGTCTTGTGACCCAATTGTTTGGATTCTGAAAAAAAACCTGTCATTAGACATCTTTTGAAAAAAAAAGCTTTTCATTCACTTTTAAATTTGATACATTTCTTGAATGAAGAAATAAAATTAAAAATTTATTCTTTAGGTTCTGGAAGCCGAGTCTTATGCGGATCGGAGTCTTCTTCGGTTGATTGGAGACGGTGCCACCCGATTTCTTCATCATCAAATAGTGGAAATTGCGTTAGACTGCCTCGGAAAATCTAAAGACGATCTGATCACTTGTTCATATTTTTGCGAAATGAGTCA</canonical>
            <polymorphic>GTCGAGATGAAGCTGATTCGAATGATGATATGGTTACTAAACAATCTGGAAGTGGTAGTGGACTGAAACCGAAAGACAGCGTTGAAGAAGCAGTGATGAGAAGTCGACGATCAACTGTGAGTTTGGGTTTTGAGGGAAATTAGATTCTTGGTTGCTCCGGTTCGTCTGAATCCATGGGATCTGCTCAAATGTGTTTACTTGTTTTCTATTAACACACAATAAGAAGATATAACTCAATTTTTGAAAAGCTACGCTTTTTCTAATTCAATTCATCTCGTTTCCTTCTCCTTGGATAGATTTGAGTCCCGTTTTCAAACCGACTTACATTCCCATGTGCTTCTTCCATTTTCTATTTTTCTGATCCATTCATCACTCTCTCCCTTGTTCCCTCCAAATAATTTTTTTTTATTTTTCCTCGATACTTTCGAATGAAAAATGACCTCATCTTCGTTCTTTCTAAAAGAAGAAACGGCGAGTAGTGAATGATGAGTTTTCGAGGYACGGGCGCCGCAATTTTTCGAAAAAAAAGTGTACACTTTCCTGGTCTTCTTTGGTTTCTGTGGCCTCCACATGATGGCAAGGTTCTGTGACAGGTGCAAAAGCACAACACAAGCCACCTGTTTGCTTTGTTCGTTTTTTAAAAAAATTCCAAGGAAGTTATTGTTACTTTTGTGTGCCAGGAACACTTCTAGCATCTCTCTGTGTCTTGTGACCCAATTGTTTGGATTCTGAAAAAAAACCTGTCATTAGACATCTTTTGAAAAAAAAAGCTTTTCATTCACTTTTAAATTTGATACATTTCTTGAATGAAGAAATAAAATTAAAAATTTATTCTTTAGGTTCTGGAAGCCGAGTCTTATGCGGATCGGAGTCTTCTTCGGTTGATTGGAGACGGTGCCACCCGATTTCTTCATCATCAAATAGTGGAAATTGCGTTAGACTGCCTCGGAAAATCTAAAGACGATCTGATCACTTGTTCATATTTTTGCGAAATGAGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>120 116 109 74 70 58 54 46 36 35 30 28 27 26 24 21 20 20 19 9 8 7 7 7 7 6 5 4 3 2 2</canonical_bands>
                <polymorphic_bands>120 116 109 74 70 58 54 50 46 36 35 28 27 26 24 21 20 19 9 8 7 7 7 7 6 5 4 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACCTCATCTTCGTTCTTTCTA</pcr_primer_p1>
		<pcr_primer_p2>GGCACACAAAAGTAACAATAACT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GACCTCATCTTCGTTCTTTCTAAAAGAAGAAACGGCGAGTAGTGAATGATGAGTTTTCGAGGCACGGGCGCCGCAATTTTTCGAAAAAAAAGTGTACACTTTCCTGGTCTTCTTTGGTTTCTGTGGCCTCCACATGATGGCAAGGTTCTGTGACAGGTGCAAAAGCACAACACAAGCCACCTGTTTGCTTTGTTCGTTTTTTAAAAAAATTCCAAGGAAGTTATTGTTACTTTTGTGTGCC</canonical_amplicon>
		<polymorphic_amplicon>GACCTCATCTTCGTTCTTTCTAAAAGAAGAAACGGCGAGTAGTGAATGATGAGTTTTCGAGGYACGGGCGCCGCAATTTTTCGAAAAAAAAGTGTACACTTTCCTGGTCTTCTTTGGTTTCTGTGGCCTCCACATGATGGCAAGGTTCTGTGACAGGTGCAAAAGCACAACACAAGCCACCTGTTTGCTTTGTTCGTTTTTTAAAAAAATTCCAAGGAAGTTATTGTTACTTTTGTGTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33262</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>525607</contig_pos>
        <strand>+</strand>
        <context>GAGTCAATGT[A/G]ACATTTTGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGGTGAGGTTCTGATGAAATGACAAGACGGACGACAGGGGAGTCAATGT</left_flank>
        <right_flank>ACATTTTGTTTTCCGCTCTTCCTCTATCTCTCTCTTCGAAAAGAGAGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCTATTGAGTGGGCAAACAGCAACAACAACAGAAAAGAAAAAAAAACCATCCGAAGATTGAAGAATAAGGCAAAGGAATGTTTTAAAAAGGTTTCAAGCGTTGATGGAAACATAAAAGAAAAGAAACAGTTTCACATGATAAATGCGAAAAAAAGGGAATTGGAGAAGTGGAAGATGGCTGGAATGCGATGCATTTCCAGTACGCAGAAGGAAATTATCAACGCTGATAAACAATTTCAAGACTATACTATAGATACGATAATTAACAAGGCATAGTTCTGGTAAAATGCACCGAAGACGCCGGAGGTAGGCCGGTTAAACAGGAAATTTCACGACTTCAGAAAAAAGGTTATTCTAGAATTTCTGAATTTGGGAGAGAGACAATGGAAACCACGTGAGATGACCCTTCGACCTAATATGAGAGACAAAGAAGTTTAAAACAGCCTTGAGGTGAGGTTCTGATGAAATGACAAGACGGACGACAGGGGAGTCAATGTCACATTTTGTTTTCCGCTCTTCCTCTATCTCTCTCTTCGAAAAGAGAGAGAAAGAAAGAATTAGGAAGAATTAGAAAGGAAAAGAGACAATTCGAATCAAACAGTATACTATACTCATTAGTCGATATTCTATTCCGGAGATACAGGAAAGGAACGAAGGGGAGTAGGTGCTGCTTTCTCATTCCGATTTGACCAGTAGCAACAGTAGCAGCTGTACATATCTGTTCTTCCCCTACGTCTGCGCCTCCGATTCCATCACCCTCTAATCCACATTTTTTCTTCTCCGGGCATCTTTTCTGTGGTTGTAAACTATACACTACCTCACTCACTCTCACTCTCTCACAAAGGCACCAACCATCCGGAAGATCAGTGAGAAAAAATGAGAGGGCAGGTTGGTAGGATAAGACATAAAAAATTAACGAGTGCGAAAGATCAGAAGCAGCAAGATGAACTATTATTCTACGGTGTCATATATGGAAATAACTATGAGCAAGACTTGCT</canonical>
            <polymorphic>ATTCTATTGAGTGGGCAAACAGCAACAACAACAGAAAAGAAAAAAAAACCATCCGAAGATTGAAGAATAAGGCAAAGGAATGTTTTAAAAAGGTTTCAAGCGTTGATGGAAACATAAAAGAAAAGAAACAGTTTCACATGATAAATGCGAAAAAAAGGGAATTGGAGAAGTGGAAGATGGCTGGAATGCGATGCATTTCCAGTACGCAGAAGGAAATTATCAACGCTGATAAACAATTTCAAGACTATACTATAGATACGATAATTAACAAGGCATAGTTCTGGTAAAATGCACCGAAGACGCCGGAGGTAGGCCGGTTAAACAGGAAATTTCACGACTTCAGAAAAAAGGTTATTCTAGAATTTCTGAATTTGGGAGAGAGACAATGGAAACCACGTGAGATGACCCTTCGACCTAATATGAGAGACAAAGAAGTTTAAAACAGCCTTGAGGTGAGGTTCTGATGAAATGACAAGACGGACGACAGGGGAGTCAATGTRACATTTTGTTTTCCGCTCTTCCTCTATCTCTCTCTTCGAAAAGAGAGAGAAAGAAAGAATTAGGAAGAATTAGAAAGGAAAAGAGACAATTCGAATCAAACAGTATACTATACTCATTAGTCGATATTCTATTCCGGAGATACAGGAAAGGAACGAAGGGGAGTAGGTGCTGCTTTCTCATTCCGATTTGACCAGTAGCAACAGTAGCAGCTGTACATATCTGTTCTTCCCCTACGTCTGCGCCTCCGATTCCATCACCCTCTAATCCACATTTTTTCTTCTCCGGGCATCTTTTCTGTGGTTGTAAACTATACACTACCTCACTCACTCTCACTCTCTCACAAAGGCACCAACCATCCGGAAGATCAGTGAGAAAAAATGAGAGGGCAGGTTGGTAGGATAAGACATAAAAAATTAACGAGTGCGAAAGATCAGAAGCAGCAAGATGAACTATTATTCTACGGTGTCATATATGGAAATAACTATGAGCAAGACTTGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>168 123 121 88 61 56 53 46 42 41 36 34 31 22 15 13 12 8 8 8 6 4 4</canonical_bands>
                <polymorphic_bands>214 123 121 88 61 56 53 42 41 36 34 31 22 15 13 12 8 8 8 6 4 4</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGAATTTCTGAATTTGGGAGA</pcr_primer_p1>
		<pcr_primer_p2>GTATACTGTTTGATTCGAATTGTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAGAATTTCTGAATTTGGGAGAGAGACAATGGAAACCACGTGAGATGACCCTTCGACCTAATATGAGAGACAAAGAAGTTTAAAACAGCCTTGAGGTGAGGTTCTGATGAAATGACAAGACGGACGACAGGGGAGTCAATGTCACATTTTGTTTTCCGCTCTTCCTCTATCTCTCTCTTCGAAAAGAGAGAGAAAGAAAGAATTAGGAAGAATTAGAAAGGAAAAGAGACAATTCGAATCAAACAGTATAC</canonical_amplicon>
		<polymorphic_amplicon>TAGAATTTCTGAATTTGGGAGAGAGACAATGGAAACCACGTGAGATGACCCTTCGACCTAATATGAGAGACAAAGAAGTTTAAAACAGCCTTGAGGTGAGGTTCTGATGAAATGACAAGACGGACGACAGGGGAGTCAATGTRACATTTTGTTTTCCGCTCTTCCTCTATCTCTCTCTTCGAAAAGAGAGAGAAAGAAAGAATTAGGAAGAATTAGAAAGGAAAAGAGACAATTCGAATCAAACAGTATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33263</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>597980</contig_pos>
        <strand>+</strand>
        <context>CGCAATAGTA[G/T]TGTTGTCTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTTTCTTATCGTATCGCAAAAGTCGACCCGCATCCTAGACGCAATAGTA</left_flank>
        <right_flank>TGTTGTCTTGATTATTCCTCGTTCTGCAAAGCACCGGCCACCCATTTCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATAAATCAAAATTGGAAATTCTAGTATTGAAGAGAACAGATTCGCATTGGGATCGGGCTTAGTTATTCCCTAGTTGTTTTTTGACTATCCCTTGTATGCAAATACAGTAAAAAAAACGATAACAAACAAATCAGAAGACCCATGTGACGTGGCAATGTTGACCTAGTATCGCCATGATCACACAATCGATTTGTTATTTCTCCAGTTAATCCCCCCTCCAATCTTATCTTTTTTTTGTTAAGTATTGATTCTCTACAATAGTTTAATAACAATTTGTTCTGTCTTTGGGAGGGAAACATTCATCCAGTAGCCTTCCGTTTCCTTTTTCATTATCCCGTTTCCCTGTTTTACGCACTTTGACTTCTTCCCTCGCCCTCGACGTTTTATTGTTTCTTCTACCTTACTAAAAAATCTGTTAACACGATTTGTCTCCAGTCGAAACCATTTGTTTTCTTATCGTATCGCAAAAGTCGACCCGCATCCTAGACGCAATAGTAGTGTTGTCTTGATTATTCCTCGTTCTGCAAAGCACCGGCCACCCATTTCATAAATCATCTCTTCAAAATTGATCCGTCAATTTTGCCGTCTTGTCCACTCCGTCTTCGCCCATAGACTCTTCTTCTTCTTCGGAGAGCCCAGTGCCCATCCTTCTATCGACTCTACGTTTTGTTCTCTAAGTGTGTATATGTCACACCTGCAATTCTTATTCCATGTGTCCCCGACACCACATGTTGCTTCTTTATCTCTGCTTTTCCCACTTTTTCTTCATCCAATTTTCATCATTTCTTTTTTTTTTGGGTCAAATCACAAAGCCACTCAGACCTCAAAATTACTTTGGAATGTGCTATTTTTTTCTCGAGTTTTGATTTTTTAAGAAGAGGGACATGCAAATTAGTAGTTTTGACTTTTTTCTAAATATGAGGAGCATGCACGGGGTCGCAGGGTGTGCGGTTTTAAAAAAACACGTTTCGCTCTAAATTGGCAGGAATTCAAATTTT</canonical>
            <polymorphic>TCATAAATCAAAATTGGAAATTCTAGTATTGAAGAGAACAGATTCGCATTGGGATCGGGCTTAGTTATTCCCTAGTTGTTTTTTGACTATCCCTTGTATGCAAATACAGTAAAAAAAACGATAACAAACAAATCAGAAGACCCATGTGACGTGGCAATGTTGACCTAGTATCGCCATGATCACACAATCGATTTGTTATTTCTCCAGTTAATCCCCCCTCCAATCTTATCTTTTTTTTGTTAAGTATTGATTCTCTACAATAGTTTAATAACAATTTGTTCTGTCTTTGGGAGGGAAACATTCATCCAGTAGCCTTCCGTTTCCTTTTTCATTATCCCGTTTCCCTGTTTTACGCACTTTGACTTCTTCCCTCGCCCTCGACGTTTTATTGTTTCTTCTACCTTACTAAAAAATCTGTTAACACGATTTGTCTCCAGTCGAAACCATTTGTTTTCTTATCGTATCGCAAAAGTCGACCCGCATCCTAGACGCAATAGTAKTGTTGTCTTGATTATTCCTCGTTCTGCAAAGCACCGGCCACCCATTTCATAAATCATCTCTTCAAAATTGATCCGTCAATTTTGCCGTCTTGTCCACTCCGTCTTCGCCCATAGACTCTTCTTCTTCTTCGGAGAGCCCAGTGCCCATCCTTCTATCGACTCTACGTTTTGTTCTCTAAGTGTGTATATGTCACACCTGCAATTCTTATTCCATGTGTCCCCGACACCACATGTTGCTTCTTTATCTCTGCTTTTCCCACTTTTTCTTCATCCAATTTTCATCATTTCTTTTTTTTTTGGGTCAAATCACAAAGCCACTCAGACCTCAAAATTACTTTGGAATGTGCTATTTTTTTCTCGAGTTTTGATTTTTTAAGAAGAGGGACATGCAAATTAGTAGTTTTGACTTTTTTCTAAATATGAGGAGCATGCACGGGGTCGCAGGGTGTGCGGTTTTAAAAAAACACGTTTCGCTCTAAATTGGCAGGAATTCAAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>172 148 87 79 67 56 50 47 39 34 31 30 29 29 22 16 15 9 9 8 7 5 3 2 2 2 2</canonical_bands>
                <polymorphic_bands>172 148 110 87 67 56 50 47 39 34 30 29 29 22 16 15 9 9 8 7 5 3 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAACACGATTTGTCTCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>AAACGTAGAGTCGATAGAAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAACACGATTTGTCTCCAGTCGAAACCATTTGTTTTCTTATCGTATCGCAAAAGTCGACCCGCATCCTAGACGCAATAGTAGTGTTGTCTTGATTATTCCTCGTTCTGCAAAGCACCGGCCACCCATTTCATAAATCATCTCTTCAAAATTGATCCGTCAATTTTGCCGTCTTGTCCACTCCGTCTTCGCCCATAGACTCTTCTTCTTCTTCGGAGAGCCCAGTGCCCATCCTTCTATCGACTCTACGTTT</canonical_amplicon>
		<polymorphic_amplicon>TAACACGATTTGTCTCCAGTCGAAACCATTTGTTTTCTTATCGTATCGCAAAAGTCGACCCGCATCCTAGACGCAATAGTAKTGTTGTCTTGATTATTCCTCGTTCTGCAAAGCACCGGCCACCCATTTCATAAATCATCTCTTCAAAATTGATCCGTCAATTTTGCCGTCTTGTCCACTCCGTCTTCGCCCATAGACTCTTCTTCTTCTTCGGAGAGCCCAGTGCCCATCCTTCTATCGACTCTACGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33264</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>598406</contig_pos>
        <strand>+</strand>
        <context>AAATATGAGG[A/G]GCATGCACGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAGAGGGACATGCAAATTAGTAGTTTTGACTTTTTTCTAAATATGAGG</left_flank>
        <right_flank>GCATGCACGGGGTCGCAGGGTGTGCGGTTTTAAAAAAACACGTTTCGCTC</right_flank>
        <qual_score>149</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGTCTCCAGTCGAAACCATTTGTTTTCTTATCGTATCGCAAAAGTCGACCCGCATCCTAGACGCAATAGTAGTGTTGTCTTGATTATTCCTCGTTCTGCAAAGCACCGGCCACCCATTTCATAAATCATCTCTTCAAAATTGATCCGTCAATTTTGCCGTCTTGTCCACTCCGTCTTCGCCCATAGACTCTTCTTCTTCTTCGGAGAGCCCAGTGCCCATCCTTCTATCGACTCTACGTTTTGTTCTCTAAGTGTGTATATGTCACACCTGCAATTCTTATTCCATGTGTCCCCGACACCACATGTTGCTTCTTTATCTCTGCTTTTCCCACTTTTTCTTCATCCAATTTTCATCATTTCTTTTTTTTTTGGGTCAAATCACAAAGCCACTCAGACCTCAAAATTACTTTGGAATGTGCTATTTTTTTCTCGAGTTTTGATTTTTTAAGAAGAGGGACATGCAAATTAGTAGTTTTGACTTTTTTCTAAATATGAGGAGCATGCACGGGGTCGCAGGGTGTGCGGTTTTAAAAAAACACGTTTCGCTCTAAATTGGCAGGAATTCAAATTTTTAAATTTTTTTAAATGCCAAGTTGGCTGCGCAGCTATTTGAAAAAGTAGCTACGGAGTATTTTTTTTTTCACAACTTTTAATGAGAAAACGTGTCGCCCTTGTTTCTCAGCAGATAGTGTTCGAATAACCGAACACCCTGCGACTCCGTGGGCATGCAAATTAGTAGTTGCGAATTTTTTTCTCCTTATTGTGGAGCTACGCCCTTCAGAAATTCTCCTGTCTCCTGTATATTTTGAAACTTCCTCATATTTTTTCTTCCTATTGATCGAGTCTCTATTAGGGATGTCACAGAATTTTTGGTGATTCGAAAAAAAAAATTGGGAATCACAAATGGGGTTAGCAATGATTAGTCATTAAATCGTTTCTTAACATCATCAGCTATTCATCAAAGTTTTTGTTGTTTCTGAATCACCAAAGAACTATTA</canonical>
            <polymorphic>TTTGTCTCCAGTCGAAACCATTTGTTTTCTTATCGTATCGCAAAAGTCGACCCGCATCCTAGACGCAATAGTAGTGTTGTCTTGATTATTCCTCGTTCTGCAAAGCACCGGCCACCCATTTCATAAATCATCTCTTCAAAATTGATCCGTCAATTTTGCCGTCTTGTCCACTCCGTCTTCGCCCATAGACTCTTCTTCTTCTTCGGAGAGCCCAGTGCCCATCCTTCTATCGACTCTACGTTTTGTTCTCTAAGTGTGTATATGTCACACCTGCAATTCTTATTCCATGTGTCCCCGACACCACATGTTGCTTCTTTATCTCTGCTTTTCCCACTTTTTCTTCATCCAATTTTCATCATTTCTTTTTTTTTTGGGTCAAATCACAAAGCCACTCAGACCTCAAAATTACTTTGGAATGTGCTATTTTTTTCTCGAGTTTTGATTTTTTAAGAAGAGGGACATGCAAATTAGTAGTTTTGACTTTTTTCTAAATATGAGGRGCATGCACGGGGTCGCAGGGTGTGCGGTTTTAAAAAAACACGTTTCGCTCTAAATTGGCAGGAATTCAAATTTTTAAATTTTTTTAAATGCCAAGTTGGCTGCGCAGCTATTTGAAAAAGTAGCTACGGAGTATTTTTTTTTTCACAACTTTTAATGAGAAAACGTGTCGCCCTTGTTTCTCAGCAGATAGTGTTCGAATAACCGAACACCCTGCGACTCCGTGGGCATGCAAATTAGTAGTTGCGAATTTTTTTCTCCTTATTGTGGAGCTACGCCCTTCAGAAATTCTCCTGTCTCCTGTATATTTTGAAACTTCCTCATATTTTTTCTTCCTATTGATCGAGTCTCTATTAGGGATGTCACAGAATTTTTGGTGATTCGAAAAAAAAAATTGGGAATCACAAATGGGGTTAGCAATGATTAGTCATTAAATCGTTTCTTAACATCATCAGCTATTCATCAAAGTTTTTGTTGTTTCTGAATCACCAAAGAACTATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACTCAGACCTCAAAATTACT</pcr_primer_p1>
		<pcr_primer_p2>AATACTCCGTAGCTACTTTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCACTCAGACCTCAAAATTACTTTGGAATGTGCTATTTTTTTCTCGAGTTTTGATTTTTTAAGAAGAGGGACATGCAAATTAGTAGTTTTGACTTTTTTCTAAATATGAGGAGCATGCACGGGGTCGCAGGGTGTGCGGTTTTAAAAAAACACGTTTCGCTCTAAATTGGCAGGAATTCAAATTTTTAAATTTTTTTAAATGCCAAGTTGGCTGCGCAGCTATTTGAAAAAGTAGCTACGGAGTATT</canonical_amplicon>
		<polymorphic_amplicon>CCACTCAGACCTCAAAATTACTTTGGAATGTGCTATTTTTTTCTCGAGTTTTGATTTTTTAAGAAGAGGGACATGCAAATTAGTAGTTTTGACTTTTTTCTAAATATGAGGRGCATGCACGGGGTCGCAGGGTGTGCGGTTTTAAAAAAACACGTTTCGCTCTAAATTGGCAGGAATTCAAATTTTTAAATTTTTTTAAATGCCAAGTTGGCTGCGCAGCTATTTGAAAAAGTAGCTACGGAGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33265</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>615209</contig_pos>
        <strand></strand>
        <context>gaataaaatt[T/A]tatcggaatc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATGAGGATTTGGAGACAGAAAAATTAGGAATGAAATCCGGAATAAAATT</left_flank>
        <right_flank>TATCGGAATCCAGAATCCGGATAACGTAAAAACTCTGATAGGTAGTGCCA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTTAATGGTATACCATAGGTCTCACAATACCCTTTGCTTTAAGTCTGTTCTGACCAATACTGTCGATTTCACTTGTTTATGTGTCACTACTGCTTCTTCTCTTTTAGATTGTATTGTCCCGACATATTTCAAATATTTATTTGGCTCTTTTTTAGAAGTATGACATAAACTTAGTTCTAATTCAAAGATCTTCCATACTCTCAGAGAGTGCGAATCCATGATAAGGTGCCGGAGAAAGTTTCAAAGGGGCACATGAATTGGATTCGTTTTTTAAGTATCCAAGTTGGCAAACGCATTTGTAACCAGTTGCCGTATTGACACATTCCTGACCAAAGTCTCGACAAAGTGATTGTTTTGTACATGGGTTGTGATGAACACATCGGCCGATATCTGGACGGTAGATGGTTCCGGGTTTCTGAAAAAAATTCAACTAAAAACTAGTATACGAAATGAGGATTTGGAGACAGAAAAATTAGGAATGAAATCCGGAATAAAATTTTATCGGAATCCAGAATCCGGATAACGTAAAAACTCTGATAGGTAGTGCCAGGGAGGAAAACAAATAAGAAACGGCTGTAATATGTAGTTCAGGATTCACCTTTTTGCAAAAATACTTTGGAAACGGTCTCGTTGTCCCGAACTTTTCAAAAATTAATTTTTAAACATTTTTTCGGTTAATTTTCGGAGTTCTCATCCCTGGTACCACCCTCCGATAGGACGCCCCTAAGCCGTCAACTTTGACCCCTTATATCTCGGTTCCTGTGAAAGATATCAAAAAGTGATAAACTGACAAAATGTTTAGTATAATATCAAAATTATTTTGTCAGTTGACCACTTTCTGATATCTTTTACAGGAACCGAGATAAATATGCTCAACGTTAAATGTTTCCGGTACCTCTGATTTCGACTCAAAAAAAATTGTACTTTCTGATACGCTTTTCTAACCCAATGATTACACATTTTGTTTTGAAGAAGAATTTGCTCTATTCTGCCCACGCC</canonical>
            <polymorphic>GCTTAATGGTATACCATAGGTCTCACAATACCCTTTGCTTTAAGTCTGTTCTGACCAATACTGTCGATTTCACTTGTTTATGTGTCACTACTGCTTCTTCTCTTTTAGATTGTATTGTCCCGACATATTTCAAATATTTATTTGGCTCTTTTTTAGAAGTATGACATAAACTTAGTTCTAATTCAAAGATCTTCCATACTCTCAGAGAGTGCGAATCCATGATAAGGTGCCGGAGAAAGTTTCAAAGGGGCACATGAATTGGATTCGTTTTTTAAGTATCCAAGTTGGCAAACGCATTTGTAACCAGTTGCCGTATTGACACATTCCTGACCAAAGTCTCGACAAAGTGATTGTTTTGTACATGGGTTGTGATGAACACATCGGCCGATATCTGGACGGTAGATGGTTCCGGGTTTCTGAAAAAAATTCAACTAAAAACTAGTATACGAAATGAGGATTTGGAGACAGAAAAATTAGGAATGAAATCCGGAATAAAATTWTATCGGAATCCAGAATCCGGATAACGTAAAAACTCTGATAGGTAGTGCCAGGGAGGAAAACAAATAAGAAACGGCTGTAATATGTAGTTCAGGATTCACCTTTTTGCAAAAATACTTTGGAAACGGTCTCGTTGTCCCGAACTTTTCAAAAATTAATTTTTAAACATTTTTTCGGTTAATTTTCGGAGTTCTCATCCCTGGTACCACCCTCCGATAGGACGCCCCTAAGCCGTCAACTTTGACCCCTTATATCTCGGTTCCTGTGAAAGATATCAAAAAGTGATAAACTGACAAAATGTTTAGTATAATATCAAAATTATTTTGTCAGTTGACCACTTTCTGATATCTTTTACAGGAACCGAGATAAATATGCTCAACGTTAAATGTTTCCGGTACCTCTGATTTCGACTCAAAAAAAATTGTACTTTCTGATACGCTTTTCTAACCCAATGATTACACATTTTGTTTTGAAGAAGAATTTGCTCTATTCTGCCCACGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>481 424 71 24</canonical_bands>
                <polymorphic_bands>552 424 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGTCTCGACAAAGTGATTGT</pcr_primer_p1>
		<pcr_primer_p2>TATTACAGCCGTTTCTTATTTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGTCTCGACAAAGTGATTGTTTTGTACATGGGTTGTGATGAACACATCGGCCGATATCTGGACGGTAGATGGTTCCGGGTTTCTGAAAAAAATTCAACTAAAAACTAGTATACGAAATGAGGATTTGGAGACAGAAAAATTAGGAATGAAATCCGGAATAAAATTTTATCGGAATCCAGAATCCGGATAACGTAAAAACTCTGATAGGTAGTGCCAGGGAGGAAAACAAATAAGAAACGGCTGTAATA</canonical_amplicon>
		<polymorphic_amplicon>AAAGTCTCGACAAAGTGATTGTTTTGTACATGGGTTGTGATGAACACATCGGCCGATATCTGGACGGTAGATGGTTCCGGGTTTCTGAAAAAAATTCAACTAAAAACTAGTATACGAAATGAGGATTTGGAGACAGAAAAATTAGGAATGAAATCCGGAATAAAATTWTATCGGAATCCAGAATCCGGATAACGTAAAAACTCTGATAGGTAGTGCCAGGGAGGAAAACAAATAAGAAACGGCTGTAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33266</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>635944</contig_pos>
        <strand>+</strand>
        <context>CTGAAAAAAC[G/T]AAACATATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTTGGAAAACAACCTTTCTGATCGAAGTTTTTCCACTTCTGAAAAAAC</left_flank>
        <right_flank>AAACATATTTATGGCTGTTCTGTCGGAAACTCACCTTTTGTGTCCCATGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTCCTTGACTTGATGGTATATGTTGAACTTGGTCTCAACACGAGCCTCCTCCGTTAGTCCGTCAGCCTTGTGCACGAAAACTTCGAACTTGATGTTCTGATTGATTTTGTAAGCCCTGCAGAAATACTCGACGAGAGTGGCAATCGGTTCCTGGAGTTCGGCTTGAGCATCAATAATGAAAAGAAGAGCCTCGCATTTTTGGAATATTCCAATCGGATCGAGAGAATCATCGAACGGGCACATTTGTCCAGGAAATTCGATTGTCTCGAAGTTGATGAATGACGAGCATATGGCTGCAAAATATGAATTATTTCCTCTTTAGGTCGTAAATAAGTCGATTTAATGCATAAATGAGCCCCCAAATAAATGGACGCAGAAAAGTAAGTACATACTATCTCGGGTGATCCTCGCAGTACTTTCAACGAACATTGTCTCATTTGGTGACATTTTTTGGAAAACAACCTTTCTGATCGAAGTTTTTCCACTTCTGAAAAAACTAAACATATTTATGGCTGTTCTGTCGGAAACTCACCTTTTGTGTCCCATGAGAATCACGGTTGGACGAGAATCCGGATAATCGTCGTCCTCGTCGATTCCATAATGATAATCGTCAAAATCTTCTTCCAGATCAGAATCCATTCTGAAATTGCAAAATGAGGTTTAATACTTCAGTTTTTCTTTTGATTATTAAAATAAATCGATAAATGAAAGTACGAAGAAGCGTTGAAAAAAACCAATTTCAGAGAAACATCAACAAAACGGCACATGGTTCTAGAGGCGGAGTCAATCCGCCCCTTTTTGCAATGCCGGTGCACGATTTTTCCCGTCATTTTTTGCCGAGCACGGCGGCAGATTTGAAGCAGAGTGTCTCGTTTATCTGGTTTTTAGGTGGGTGTTTTATTCACAAATTCAAATATAGCTTTATCTTTTTTTCGTTTTGTTGAAATAGAAGTCAATATACGCAAAAATCTGTCACTATTTAATTTACTATGATTCTG</canonical>
            <polymorphic>GTTTCCTTGACTTGATGGTATATGTTGAACTTGGTCTCAACACGAGCCTCCTCCGTTAGTCCGTCAGCCTTGTGCACGAAAACTTCGAACTTGATGTTCTGATTGATTTTGTAAGCCCTGCAGAAATACTCGACGAGAGTGGCAATCGGTTCCTGGAGTTCGGCTTGAGCATCAATAATGAAAAGAAGAGCCTCGCATTTTTGGAATATTCCAATCGGATCGAGAGAATCATCGAACGGGCACATTTGTCCAGGAAATTCGATTGTCTCGAAGTTGATGAATGACGAGCATATGGCTGCAAAATATGAATTATTTCCTCTTTAGGTCGTAAATAAGTCGATTTAATGCATAAATGAGCCCCCAAATAAATGGACGCAGAAAAGTAAGTACATACTATCTCGGGTGATCCTCGCAGTACTTTCAACGAACATTGTCTCATTTGGTGACATTTTTTGGAAAACAACCTTTCTGATCGAAGTTTTTCCACTTCTGAAAAAACKAAACATATTTATGGCTGTTCTGTCGGAAACTCACCTTTTGTGTCCCATGAGAATCACGGTTGGACGAGAATCCGGATAATCGTCGTCCTCGTCGATTCCATAATGATAATCGTCAAAATCTTCTTCCAGATCAGAATCCATTCTGAAATTGCAAAATGAGGTTTAATACTTCAGTTTTTCTTTTGATTATTAAAATAAATCGATAAATGAAAGTACGAAGAAGCGTTGAAAAAAACCAATTTCAGAGAAACATCAACAAAACGGCACATGGTTCTAGAGGCGGAGTCAATCCGCCCCTTTTTGCAATGCCGGTGCACGATTTTTCCCGTCATTTTTTGCCGAGCACGGCGGCAGATTTGAAGCAGAGTGTCTCGTTTATCTGGTTTTTAGGTGGGTGTTTTATTCACAAATTCAAATATAGCTTTATCTTTTTTTCGTTTTGTTGAAATAGAAGTCAATATACGCAAAAATCTGTCACTATTTAATTTACTATGATTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACATACTATCTCGGGTGATCC</pcr_primer_p1>
		<pcr_primer_p2>GATTCTGATCTGGAAGAAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TACATACTATCTCGGGTGATCCTCGCAGTACTTTCAACGAACATTGTCTCATTTGGTGACATTTTTTGGAAAACAACCTTTCTGATCGAAGTTTTTCCACTTCTGAAAAAACTAAACATATTTATGGCTGTTCTGTCGGAAACTCACCTTTTGTGTCCCATGAGAATCACGGTTGGACGAGAATCCGGATAATCGTCGTCCTCGTCGATTCCATAATGATAATCGTCAAAATCTTCTTCCAGATCAGAATC</canonical_amplicon>
		<polymorphic_amplicon>TACATACTATCTCGGGTGATCCTCGCAGTACTTTCAACGAACATTGTCTCATTTGGTGACATTTTTTGGAAAACAACCTTTCTGATCGAAGTTTTTCCACTTCTGAAAAAACKAAACATATTTATGGCTGTTCTGTCGGAAACTCACCTTTTGTGTCCCATGAGAATCACGGTTGGACGAGAATCCGGATAATCGTCGTCCTCGTCGATTCCATAATGATAATCGTCAAAATCTTCTTCCAGATCAGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33267</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>636140</contig_pos>
        <strand>+</strand>
        <context>ATTATTAAAA[G/T]AAATCGATAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATTGCAAAATGAGGTTTAATACTTCAGTTTTTCTTTTGATTATTAAAA</left_flank>
        <right_flank>AAATCGATAAATGAAAGTACGAAGAAGCGTTGAAAAAAACCAATTTCAGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTGGAATATTCCAATCGGATCGAGAGAATCATCGAACGGGCACATTTGTCCAGGAAATTCGATTGTCTCGAAGTTGATGAATGACGAGCATATGGCTGCAAAATATGAATTATTTCCTCTTTAGGTCGTAAATAAGTCGATTTAATGCATAAATGAGCCCCCAAATAAATGGACGCAGAAAAGTAAGTACATACTATCTCGGGTGATCCTCGCAGTACTTTCAACGAACATTGTCTCATTTGGTGACATTTTTTGGAAAACAACCTTTCTGATCGAAGTTTTTCCACTTCTGAAAAAACTAAACATATTTATGGCTGTTCTGTCGGAAACTCACCTTTTGTGTCCCATGAGAATCACGGTTGGACGAGAATCCGGATAATCGTCGTCCTCGTCGATTCCATAATGATAATCGTCAAAATCTTCTTCCAGATCAGAATCCATTCTGAAATTGCAAAATGAGGTTTAATACTTCAGTTTTTCTTTTGATTATTAAAATAAATCGATAAATGAAAGTACGAAGAAGCGTTGAAAAAAACCAATTTCAGAGAAACATCAACAAAACGGCACATGGTTCTAGAGGCGGAGTCAATCCGCCCCTTTTTGCAATGCCGGTGCACGATTTTTCCCGTCATTTTTTGCCGAGCACGGCGGCAGATTTGAAGCAGAGTGTCTCGTTTATCTGGTTTTTAGGTGGGTGTTTTATTCACAAATTCAAATATAGCTTTATCTTTTTTTCGTTTTGTTGAAATAGAAGTCAATATACGCAAAAATCTGTCACTATTTAATTTACTATGATTCTGCACAAATGAAACAACTCCGCCAGTTTTGAAACATTTTGTGGCGACATTCACCATCTTCAAAAATTCGTTTGAATATTCTTAATTTTTCCTTACTATAAGCTGCTCTTATTTATCAGTTGTCATTTCAGATATGAGCGACAAAGGTAATGGGCGAGAATTGTACCAACCGCCGGCAAAACGTACTGAAAAAGGGTCC</canonical>
            <polymorphic>ATTTTTGGAATATTCCAATCGGATCGAGAGAATCATCGAACGGGCACATTTGTCCAGGAAATTCGATTGTCTCGAAGTTGATGAATGACGAGCATATGGCTGCAAAATATGAATTATTTCCTCTTTAGGTCGTAAATAAGTCGATTTAATGCATAAATGAGCCCCCAAATAAATGGACGCAGAAAAGTAAGTACATACTATCTCGGGTGATCCTCGCAGTACTTTCAACGAACATTGTCTCATTTGGTGACATTTTTTGGAAAACAACCTTTCTGATCGAAGTTTTTCCACTTCTGAAAAAACTAAACATATTTATGGCTGTTCTGTCGGAAACTCACCTTTTGTGTCCCATGAGAATCACGGTTGGACGAGAATCCGGATAATCGTCGTCCTCGTCGATTCCATAATGATAATCGTCAAAATCTTCTTCCAGATCAGAATCCATTCTGAAATTGCAAAATGAGGTTTAATACTTCAGTTTTTCTTTTGATTATTAAAAKAAATCGATAAATGAAAGTACGAAGAAGCGTTGAAAAAAACCAATTTCAGAGAAACATCAACAAAACGGCACATGGTTCTAGAGGCGGAGTCAATCCGCCCCTTTTTGCAATGCCGGTGCACGATTTTTCCCGTCATTTTTTGCCGAGCACGGCGGCAGATTTGAAGCAGAGTGTCTCGTTTATCTGGTTTTTAGGTGGGTGTTTTATTCACAAATTCAAATATAGCTTTATCTTTTTTTCGTTTTGTTGAAATAGAAGTCAATATACGCAAAAATCTGTCACTATTTAATTTACTATGATTCTGCACAAATGAAACAACTCCGCCAGTTTTGAAACATTTTGTGGCGACATTCACCATCTTCAAAAATTCGTTTGAATATTCTTAATTTTTCCTTACTATAAGCTGCTCTTATTTATCAGTTGTCATTTCAGATATGAGCGACAAAGGTAATGGGCGAGAATTGTACCAACCGCCGGCAAAACGTACTGAAAAAGGGTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACATATTTATGGCTGTTCTGTC</pcr_primer_p1>
		<pcr_primer_p2>ATGTTTCTCTGAAATTGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AACATATTTATGGCTGTTCTGTCGGAAACTCACCTTTTGTGTCCCATGAGAATCACGGTTGGACGAGAATCCGGATAATCGTCGTCCTCGTCGATTCCATAATGATAATCGTCAAAATCTTCTTCCAGATCAGAATCCATTCTGAAATTGCAAAATGAGGTTTAATACTTCAGTTTTTCTTTTGATTATTAAAATAAATCGATAAATGAAAGTACGAAGAAGCGTTGAAAAAAACCAATTTCAGAGAAACAT</canonical_amplicon>
		<polymorphic_amplicon>AACATATTTATGGCTGTTCTGTCGGAAACTCACCTTTTGTGTCCCATGAGAATCACGGTTGGACGAGAATCCGGATAATCGTCGTCCTCGTCGATTCCATAATGATAATCGTCAAAATCTTCTTCCAGATCAGAATCCATTCTGAAATTGCAAAATGAGGTTTAATACTTCAGTTTTTCTTTTGATTATTAAAAKAAATCGATAAATGAAAGTACGAAGAAGCGTTGAAAAAAACCAATTTCAGAGAAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33268</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>637033</contig_pos>
        <strand>+</strand>
        <context>TTTCCTAAGA[A/T]AGAAACTCCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAAACGGATAAGAAACCGGTAACGACAAGAGGTCCCGGTTTTCCTAAGA</left_flank>
        <right_flank>AGAAACTCCGTCGTCTGGTCGCAACGATGATTCTGAGAACCACAACAAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTACTATAAGCTGCTCTTATTTATCAGTTGTCATTTCAGATATGAGCGACAAAGGTAATGGGCGAGAATTGTACCAACCGCCGGCAAAACGTACTGAAAAAGGGTCCAACCCAAGGTACACATGTGTTTCAAAAATTGTGTGTATTTCAAAAAACACATTTCAGTACACTGGTGAAAGAGGAGTGTCGAGAATCGTTTCGGAAGATCACACCAAATTGCTGCGAAGAAGACGACGACGGTGATGACACCATAAGCTCACCTGTCAAAAATTCAACAAACACCGATAAATCGCCAAGCGCTAGTTCAAAAAACTGGAGGACAACGACTCCCTCTCTTTCTTCAACAGAACCTTCCTCTGATATCATTCACAATGTGAGTCTTGTAATGTAACTTTAAAAACTGTTAATCTTTTAGGTTCAAGAGAAATGTAACATAGGGTCTCGACGAAATAAAACGGATAAGAAACCGGTAACGACAAGAGGTCCCGGTTTTCCTAAGAAAGAAACTCCGTCGTCTGGTCGCAACGATGATTCTGAGAACCACAACAAGGCCCTGTTAGAGAAGGTATGTCATGAATTCACGAAGCTGAATAGAGGACTCACTGCGGAGTCCCGGTCATAAAGCTGAACATTTTTAAATCTGTTTTTCAGTTTCACTGCACAGACATGCCCTACATTGACTCACATTGTCACACCGACTTCATCTACACTATGCTCATGCGCTCAAAACAGTTCAAGCCTACGGATGGGATTCGAGAATGGATCTATAGATATCCGGATGCGTTCCCTAGAGCGTTTGCTGGAATGATTGCCAACTTTATCAAGCCTGAATTATTTGTTAACTGCGCCGATAATGAGGAGTATGATTTCCGATGGATTCTGGAACAGCTACGATCGAACTACTATTTAGGAACTACTTGGGGATGTCATCCACATCATGCAGAAAAGTTAGTAAGCTGAATTTATTGCAAACATTGTTCCATGAGACTGGAAACCGCGAG</canonical>
            <polymorphic>TTACTATAAGCTGCTCTTATTTATCAGTTGTCATTTCAGATATGAGCGACAAAGGTAATGGGCGAGAATTGTACCAACCGCCGGCAAAACGTACTGAAAAAGGGTCCAACCCAAGGTACACATGTGTTTCAAAAATTGTGTGTATTTCAAAAAACACATTTCAGTACACTGGTGAAAGAGGAGTGTCGAGAATCGTTTCGGAAGATCACACCAAATTGCTGCGAAGAAGACGACGACGGTGATGACACCATAAGCTCACCTGTCAAAAATTCAACAAACACCGATAAATCGCCAAGCGCTAGTTCAAAAAACTGGAGGACAACGACTCCCTCTCTTTCTTCAACAGAACCTTCCTCTGATATCATTCACAATGTGAGTCTTGTAATGTAACTTTAAAAACTGTTAATCTTTTAGGTTCAAGAGAAATGTAACATAGGGTCTCGACGAAATAAAACGGATAAGAAACCGGTAACGACAAGAGGTCCCGGTTTTCCTAAGAWAGAAACTCCGTCGTCTGGTCGCAACGATGATTCTGAGAACCACAACAAGGCCCTGTTAGAGAAGGTATGTCATGAATTCACGAAGCTGAATAGAGGACTCACTGCGGAGTCCCGGTCATAAAGCTGAACATTTTTAAATCTGTTTTTCAGTTTCACTGCACAGACATGCCCTACATTGACTCACATTGTCACACCGACTTCATCTACACTATGCTCATGCGCTCAAAACAGTTCAAGCCTACGGATGGGATTCGAGAATGGATCTATAGATATCCGGATGCGTTCCCTAGAGCGTTTGCTGGAATGATTGCCAACTTTATCAAGCCTGAATTATTTGTTAACTGCGCCGATAATGAGGAGTATGATTTCCGATGGATTCTGGAACAGCTACGATCGAACTACTATTTAGGAACTACTTGGGGATGTCATCCACATCATGCAGAAAAGTTAGTAAGCTGAATTTATTGCAAACATTGTTCCATGAGACTGGAAACCGCGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGAAATAAAACGGATAAGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TGTGACAATGTGAGTCAATGTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGAAATAAAACGGATAAGAAACCGGTAACGACAAGAGGTCCCGGTTTTCCTAAGAAAGAAACTCCGTCGTCTGGTCGCAACGATGATTCTGAGAACCACAACAAGGCCCTGTTAGAGAAGGTATGTCATGAATTCACGAAGCTGAATAGAGGACTCACTGCGGAGTCCCGGTCATAAAGCTGAACATTTTTAAATCTGTTTTTCAGTTTCACTGCACAGACATGCCCTACATTGACTCACATTGTCACA</canonical_amplicon>
		<polymorphic_amplicon>ACGAAATAAAACGGATAAGAAACCGGTAACGACAAGAGGTCCCGGTTTTCCTAAGAWAGAAACTCCGTCGTCTGGTCGCAACGATGATTCTGAGAACCACAACAAGGCCCTGTTAGAGAAGGTATGTCATGAATTCACGAAGCTGAATAGAGGACTCACTGCGGAGTCCCGGTCATAAAGCTGAACATTTTTAAATCTGTTTTTCAGTTTCACTGCACAGACATGCCCTACATTGACTCACATTGTCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33269</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>649297</contig_pos>
        <strand>+</strand>
        <context>CTCCAGCCAG[A/G]ACAAGAACCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTTGAATAAAGTCAATTCCGTTTCTAACCGCATTGGCAACTCCAGCCAG</left_flank>
        <right_flank>ACAAGAACCGAAAGAAGGAGCTTCATGATTCTGAATCTGAAGGTTTTCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAACGTTTTCATTGGCAATTCTAAAGTTTGAAACTGTATTTTGTTATTAAGTGTTTGGAGGCCTTATTACTAATACTACATTGTTTTTTTTAATGTGGAGTGACTTGAAAAGAACTGTCTCGAAATTTTGTTCATATAGTTCATATCGTCTCAAGCAGTTGAACTTGTGGGACGAGTATTGAAGGTGCGGTGGCTCTTCCGACTGAGCTAACCCCCTAGCTCCAAAAAAATCCACAAAGCTCCTGCCGTGCCTCCTTTATATTTTGAAAGCATTGATTGACATGAAACATAAAAACCGGTTATCCAATGGATCTTGAACTCACCAGCTCTAGCATTCTTAACATTGTTGACTCCAGTGCTGTCCACCTTTCCGAGAGAAGTGAAAACTCTTGGAATAACAAAGGAATATCCAGCATTCTTAACACATTGGAATGTGGCTACAGACACTGGTTGAATAAAGTCAATTCCGTTTCTAACCGCATTGGCAACTCCAGCCAGAACAAGAACCGAAAGAAGGAGCTTCATGATTCTGAATCTGAAGGTTTTCCTTCGTTTCACTAAATTTATATGATTCTGAACCCGGAGTTGCAATCGTTTTTTATTACTCCTGACGTAATCATTTTTGTGATTTTATATGTATGTAAAATAACATCAAGACTGTTTTCTTTGTGCTGAGTACACTTTTAATTGCTGATGTAAAAGCCACTAAAAATGGAAGAAAAAAGATGAAATCGGTTAAAGAATTCTAGTTTTGCCCCATTTTCCGAATTCCGTATTTCTTATCATTTTCAGATGATGGAAAAATTTCAAATAAAAAGATCACGGTCAAACAAATCAAGATCAGTTATTCAAGAAACATTTGAAGTTATGGTCTTGTATTATGCTGGTATTTATGCAAAAACCGGAACTGTGGAAGAGAAACGTCGGTGGTCGTGGCCGAAGGTCCCACAACGACAACTACCGTAACCTAAAATATTGTTCTTTTCCGTATTTTTCATA</canonical>
            <polymorphic>AGAACGTTTTCATTGGCAATTCTAAAGTTTGAAACTGTATTTTGTTATTAAGTGTTTGGAGGCCTTATTACTAATACTACATTGTTTTTTTTAATGTGGAGTGACTTGAAAAGAACTGTCTCGAAATTTTGTTCATATAGTTCATATCGTCTCAAGCAGTTGAACTTGTGGGACGAGTATTGAAGGTGCGGTGGCTCTTCCGACTGAGCTAACCCCCTAGCTCCAAAAAAATCCACAAAGCTCCTGCCGTGCCTCCTTTATATTTTGAAAGCATTGATTGACATGAAACATAAAAACCGGTTATCCAATGGATCTTGAACTCACCAGCTCTAGCATTCTTAACATTGTTGACTCCAGTGCTGTCCACCTTTCCGAGAGAAGTGAAAACTCTTGGAATAACAAAGGAATATCCAGCATTCTTAACACATTGGAATGTGGCTACAGACACTGGTTGAATAAAGTCAATTCCGTTTCTAACCGCATTGGCAACTCCAGCCAGRACAAGAACCGAAAGAAGGAGCTTCATGATTCTGAATCTGAAGGTTTTCCTTCGTTTCACTAAATTTATATGATTCTGAACCCGGAGTTGCAATCGTTTTTTATTACTCCTGACGTAATCATTTTTGTGATTTTATATGTATGTAAAATAACATCAAGACTGTTTTCTTTGTGCTGAGTACACTTTTAATTGCTGATGTAAAAGCCACTAAAAATGGAAGAAAAAAGATGAAATCGGTTAAAGAATTCTAGTTTTGCCCCATTTTCCGAATTCCGTATTTCTTATCATTTTCAGATGATGGAAAAATTTCAAATAAAAAGATCACGGTCAAACAAATCAAGATCAGTTATTCAAGAAACATTTGAAGTTATGGTCTTGTATTATGCTGGTATTTATGCAAAAACCGGAACTGTGGAAGAGAAACGTCGGTGGTCGTGGCCGAAGGTCCCACAACGACAACTACCGTAACCTAAAATATTGTTCTTTTCCGTATTTTTCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGAAAACTCTTGGAATAACAAA</pcr_primer_p1>
		<pcr_primer_p2>AATCACAAAAATGATTACGTCAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTGAAAACTCTTGGAATAACAAAGGAATATCCAGCATTCTTAACACATTGGAATGTGGCTACAGACACTGGTTGAATAAAGTCAATTCCGTTTCTAACCGCATTGGCAACTCCAGCCAGAACAAGAACCGAAAGAAGGAGCTTCATGATTCTGAATCTGAAGGTTTTCCTTCGTTTCACTAAATTTATATGATTCTGAACCCGGAGTTGCAATCGTTTTTTATTACTCCTGACGTAATCATTTTTGTGATT</canonical_amplicon>
		<polymorphic_amplicon>GTGAAAACTCTTGGAATAACAAAGGAATATCCAGCATTCTTAACACATTGGAATGTGGCTACAGACACTGGTTGAATAAAGTCAATTCCGTTTCTAACCGCATTGGCAACTCCAGCCAGRACAAGAACCGAAAGAAGGAGCTTCATGATTCTGAATCTGAAGGTTTTCCTTCGTTTCACTAAATTTATATGATTCTGAACCCGGAGTTGCAATCGTTTTTTATTACTCCTGACGTAATCATTTTTGTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33270</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>684836</contig_pos>
        <strand>+</strand>
        <context>CCGATGTTCC[C/T]TTTTTTCCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCCCTTTTCCCTTCTTTTTGAATATTCTTTTCCATCAATCCGATGTTCC</left_flank>
        <right_flank>TTTTTTCCGGGTAAAATACTACCATCGTGTAGTAGTTCCATCCAAATCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCATCGAAAATTCGGTGAATTCTCTTTCAAATATCATAAAAATCTATCATTTTCACTCAAACTGAGCAAGTTTATGAGTAAATTTTCGAATTTTCGAAAGATTTTTCAATGAAAACGTACAAAAATATTTAATTTCAAACTACAAACTTTGAAAAGGCTTTTCTATTACAGAGGACCCTTCTATTTTCCCAACTTCCTCTCGAAGGGCCCTTCTATTAGAGGGGTCGTTCTATTGAAGGGCAATTCTAATGAAGGTTTTACTTTAAATAGATTATTTCAGGAGCACCTCAAAGCTACTCGTCCATCCATCACTCAGGAAGACTTGCACAAAGGGATCGAGAAAATGAAAAAAATTCAAATCGATGAAAAATAGATTACGGCTTTTTCCGAATCCCCTTCCTCTCCATTTTTAATCATGTTCGTCATAATAATGCCTTTTAATCCCCAACCCCTTTTCCCTTCTTTTTGAATATTCTTTTCCATCAATCCGATGTTCCTTTTTTTCCGGGTAAAATACTACCATCGTGTAGTAGTTCCATCCAAATCCCCGTGCCATTTTCTTATTCTTTAACAATTCTTTTGGGTGATTCGATTCGACGATAAATTCCATTGCAAGAAGTTTATTGGTTTCAAATATATACAAGAAAATGAGATCATGAAAAAGTTTTAAGTAATATTGAATTCATGTGAAAAGAAAAAAGCAAAGATACTTTAAAACAAATTTGGAGAGAAGTTGAGGGTAAATGAAGAAGAAGAAAACTGAACAGTGTGAGAAGTTTAAAGAAGAAAATTCAGAATTTAGAAAATCTATTCTTGGAATTCAAGTTCATCAAGAACTCGATCAATATGCTCGACAGCAGACAATCCGAGACCTGCCCAAGTTTTGTCATCAAGTACTTTGACGTGAGATTGGAGAAGATCCATATCTGTTTGAGCACCTGTATCACGAAGAGAATCCACATTATCTTCGATGAAACGGAGGCGGTGACGGACGATCT</canonical>
            <polymorphic>TTTCATCGAAAATTCGGTGAATTCTCTTTCAAATATCATAAAAATCTATCATTTTCACTCAAACTGAGCAAGTTTATGAGTAAATTTTCGAATTTTCGAAAGATTTTTCAATGAAAACGTACAAAAATATTTAATTTCAAACTACAAACTTTGAAAAGGCTTTTCTATTACAGAGGACCCTTCTATTTTCCCAACTTCCTCTCGAAGGGCCCTTCTATTAGAGGGGTCGTTCTATTGAAGGGCAATTCTAATGAAGGTTTTACTTTAAATAGATTATTTCAGGAGCACCTCAAAGCTACTCGTCCATCCATCACTCAGGAAGACTTGCACAAAGGGATCGAGAAAATGAAAAAAATTCAAATCGATGAAAAATAGATTACGGCTTTTTCCGAATCCCCTTCCTCTCCATTTTTAATCATGTTCGTCATAATAATGCCTTTTAATCCCCAACCCCTTTTCCCTTCTTTTTGAATATTCTTTTCCATCAATCCGATGTTCCYTTTTTTCCGGGTAAAATACTACCATCGTGTAGTAGTTCCATCCAAATCCCCGTGCCATTTTCTTATTCTTTAACAATTCTTTTGGGTGATTCGATTCGACGATAAATTCCATTGCAAGAAGTTTATTGGTTTCAAATATATACAAGAAAATGAGATCATGAAAAAGTTTTAAGTAATATTGAATTCATGTGAAAAGAAAAAAGCAAAGATACTTTAAAACAAATTTGGAGAGAAGTTGAGGGTAAATGAAGAAGAAGAAAACTGAACAGTGTGAGAAGTTTAAAGAAGAAAATTCAGAATTTAGAAAATCTATTCTTGGAATTCAAGTTCATCAAGAACTCGATCAATATGCTCGACAGCAGACAATCCGAGACCTGCCCAAGTTTTGTCATCAAGTACTTTGACGTGAGATTGGAGAAGATCCATATCTGTTTGAGCACCTGTATCACGAAGAGAATCCACATTATCTTCGATGAAACGGAGGCGGTGACGGACGATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAAAAATAGATTACGGCTTTT</pcr_primer_p1>
		<pcr_primer_p2>AATGGAATTTATCGTCGAATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGAAAAATAGATTACGGCTTTTTCCGAATCCCCTTCCTCTCCATTTTTAATCATGTTCGTCATAATAATGCCTTTTAATCCCCAACCCCTTTTCCCTTCTTTTTGAATATTCTTTTCCATCAATCCGATGTTCCTTTTTTTCCGGGTAAAATACTACCATCGTGTAGTAGTTCCATCCAAATCCCCGTGCCATTTTCTTATTCTTTAACAATTCTTTTGGGTGATTCGATTCGACGATAAATTCCATT</canonical_amplicon>
		<polymorphic_amplicon>ATGAAAAATAGATTACGGCTTTTTCCGAATCCCCTTCCTCTCCATTTTTAATCATGTTCGTCATAATAATGCCTTTTAATCCCCAACCCCTTTTCCCTTCTTTTTGAATATTCTTTTCCATCAATCCGATGTTCCYTTTTTTCCGGGTAAAATACTACCATCGTGTAGTAGTTCCATCCAAATCCCCGTGCCATTTTCTTATTCTTTAACAATTCTTTTGGGTGATTCGATTCGACGATAAATTCCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33271</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>686717</contig_pos>
        <strand></strand>
        <context>ttataagagc[T/C]tagaaaaatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATCACAATTATTTTATCAGTTGACACATTTTTCATATCTTTTATAAGAGC</left_flank>
        <right_flank>TAGAAAAATTAACTGAAACTTGATAGTGTGGGGCCCTTCTTTCACAGGTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTCGTCTCGATCATTAACCATTTGGTTATCAAACTTGATCGCTGCTCGAAGAAATTCATTATTTCCTTGTGCGGCTGCCACATGAACTGGCAACATTTTACAGTTGTTGTCGAGAAGAGCAAGTGCTTTCCCGAACTTTCTGAGAAGCCAGATGGACATGTCAGTATCTCCACGTGCAACAGATGCCATCAGAATAGATGTACCATTGACATCCCGGGTCATTGCACTGTTCATTGTTGATTTCACAGGCCCTCCAAGCAACATTTCGAGAGCCCGCATATCTGAAAATCAGACTTTCAAAAAGTTCACTTTCCAGATTTTCATTTCAAAATACTTACCCTAGCACCTGTAACAGAAGAGCCCCTTAACTTTTAACTTTGAACTCATTTATTTTGGTCTGTGAAAGATATAAAAAAAGCAGAAAACTAATAAATTGTTTATCATAATATCACAATTATTTTATCAGTTGACACATTTTTCATATCTTTTATAAGAGCTTAGAAAAATTAACTGAAACTTGATAGTGTGGGGCCCTTCTTTCACAGGTTTTACGGTAGCTCTGAACCCCATTGATATTCAATAGAACCGATTTATTCATACCTCCATGAGCAGCTGATATATGTGCTGGAGTTTCTCCATTCGCCGACTGGATGTCCCTTAGCTCAGGAAGTCTGTCCAGTAAGTACCTGAAATCTAGTCAATGACCTGATTTCTTCGCCAGCTTTGTTTGCTCTTCATTCTCTCAGTTACGCCCGTATCAATTTCGAGAAGAGAGGAGAGAAAAAGTGAGGTACTCAATTGGTTCCTGTTTTCTTTCTTTTTTGAAATATTCACACTCACTTCAAAATATTCAAATCTCCAACACGAGCGGCCATGTGAAGAGCATTTTGACCAATAGTGTCTTTTGCGAGAAGCTCATTATTTGAGAATCTGAAAATGGGAAACTGAAGTTAGGAAGGAAGACTATACATCTAAACCGATCTTTGCTGTCATTCTAG</canonical>
            <polymorphic>AACTCGTCTCGATCATTAACCATTTGGTTATCAAACTTGATCGCTGCTCGAAGAAATTCATTATTTCCTTGTGCGGCTGCCACATGAACTGGCAACATTTTACAGTTGTTGTCGAGAAGAGCAAGTGCTTTCCCGAACTTTCTGAGAAGCCAGATGGACATGTCAGTATCTCCACGTGCAACAGATGCCATCAGAATAGATGTACCATTGACATCCCGGGTCATTGCACTGTTCATTGTTGATTTCACAGGCCCTCCAAGCAACATTTCGAGAGCCCGCATATCTGAAAATCAGACTTTCAAAAAGTTCACTTTCCAGATTTTCATTTCAAAATACTTACCCTAGCACCTGTAACAGAAGAGCCCCTTAACTTTTAACTTTGAACTCATTTATTTTGGTCTGTGAAAGATATAAAAAAAGCAGAAAACTAATAAATTGTTTATCATAATATCACAATTATTTTATCAGTTGACACATTTTTCATATCTTTTATAAGAGCYTAGAAAAATTAACTGAAACTTGATAGTGTGGGGCCCTTCTTTCACAGGTTTTACGGTAGCTCTGAACCCCATTGATATTCAATAGAACCGATTTATTCATACCTCCATGAGCAGCTGATATATGTGCTGGAGTTTCTCCATTCGCCGACTGGATGTCCCTTAGCTCAGGAAGTCTGTCCAGTAAGTACCTGAAATCTAGTCAATGACCTGATTTCTTCGCCAGCTTTGTTTGCTCTTCATTCTCTCAGTTACGCCCGTATCAATTTCGAGAAGAGAGGAGAGAAAAAGTGAGGTACTCAATTGGTTCCTGTTTTCTTTCTTTTTTGAAATATTCACACTCACTTCAAAATATTCAAATCTCCAACACGAGCGGCCATGTGAAGAGCATTTTGACCAATAGTGTCTTTTGCGAGAAGCTCATTATTTGAGAATCTGAAAATGGGAAACTGAAGTTAGGAAGGAAGACTATACATCTAAACCGATCTTTGCTGTCATTCTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>498 193 84 61 60 55 49</canonical_bands>
                <polymorphic_bands>559 193 84 60 55 49</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>357 256 160 142 80 5</canonical_bands>
                <polymorphic_bands>517 256 142 80 5</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>150 136 102 88 84 76 73 60 55 49 43 35 26 23</canonical_bands>
                <polymorphic_bands>171 150 102 88 84 76 73 60 55 49 43 26 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCATTGTTGATTTCACAGG</pcr_primer_p1>
		<pcr_primer_p2>GAATAAATCGGTTCTATTGAATATC</pcr_primer_p2>
		<pcr_amplicon_size>368</pcr_amplicon_size>
		<canonical_amplicon>GTTCATTGTTGATTTCACAGGCCCTCCAAGCAACATTTCGAGAGCCCGCATATCTGAAAATCAGACTTTCAAAAAGTTCACTTTCCAGATTTTCATTTCAAAATACTTACCCTAGCACCTGTAACAGAAGAGCCCCTTAACTTTTAACTTTGAACTCATTTATTTTGGTCTGTGAAAGATATAAAAAAAGCAGAAAACTAATAAATTGTTTATCATAATATCACAATTATTTTATCAGTTGACACATTTTTCATATCTTTTATAAGAGCTTAGAAAAATTAACTGAAACTTGATAGTGTGGGGCCCTTCTTTCACAGGTTTTACGGTAGCTCTGAACCCCATTGATATTCAATAGAACCGATTTATTC</canonical_amplicon>
		<polymorphic_amplicon>GTTCATTGTTGATTTCACAGGCCCTCCAAGCAACATTTCGAGAGCCCGCATATCTGAAAATCAGACTTTCAAAAAGTTCACTTTCCAGATTTTCATTTCAAAATACTTACCCTAGCACCTGTAACAGAAGAGCCCCTTAACTTTTAACTTTGAACTCATTTATTTTGGTCTGTGAAAGATATAAAAAAAGCAGAAAACTAATAAATTGTTTATCATAATATCACAATTATTTTATCAGTTGACACATTTTTCATATCTTTTATAAGAGCYTAGAAAAATTAACTGAAACTTGATAGTGTGGGGCCCTTCTTTCACAGGTTTTACGGTAGCTCTGAACCCCATTGATATTCAATAGAACCGATTTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33272</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>824692</contig_pos>
        <strand>+</strand>
        <context>AAGGTTCATC[C/T]ACTTGTCCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGAAAAACATTTCGCAGATAAACTGGGATTCCCAAGAAGAAGGTTCATC</left_flank>
        <right_flank>ACTTGTCCACGATCGAAAGATGAAGCAGACGCTAGAAATGTGTGTAATAG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATACCTACAGGTATTGCTTGCTGATTTTTTTTGAGTTCGGTCAGTAAATTATTCTAATTAACAATTATTGTCGAAAATATGATATGGGATTGATCCTCTATTCATTTATTTTATGGGGTTATTCAGGGAGTCGCCAAAAAGGAAAAAAAACTCNNNNNNNNNNNNGCTGGAATTTCAGTTTTCCCCAAAGTTTCAGCCAGATTGGAACACTCTCCGAGTTTTCGCGGAGTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTAGAGGCTGCCTAGATTTGTGGCTAGATGAAAACACATTTTCGGCAGATGAAAGTTCCACGAGTTGTGATCGGCATGTCGGGAGGAGTTGATAGTGCAGTGTCAGCATTTTTGCTGAAGCAGAAAGGATTTGATGTAGTTGGATTACACATGGTAACTCATTCCAGACAAAGAGAATCAGAAAAGAAAAACATTTCGCAGATAAACTGGGATTCCCAAGAAGAAGGTTCATCTACTTGTCCACGATCGAAAGATGAAGCAGACGCTAGAAATGTGTGTAATAGATTAAATATCCCATTTCACACAGTTAACTTTGTGAAAGAATATTGGAATCATGTATTTCTGTGAGCTTGTGAAAAATTTAACATTTCAGACTACTGATTTCGTTTCAGAAAATTCTTGGAAAACTACAAAATCGGAAGAACCACAGTTCCAGATATTGATTGCAATTATTCAATCAAATTTGACGCTTTTCATAAAGTCGCCCAAGAAACGTTTGATGCTGATTTCATCGCAACTGGACACTACGCAACTACCAGTTTTGGAGACTTTCAGCAAAATAGAAAACATTCAGAAGGTGAAAATTAACATTAACTGCGAATCCGGATATTTGATTTTCTTTTAGCCATTCGCCTATTCTCTGGACGAGATCCTTTGAAAGATCAAACATTTTTTCTATGTACCGTAACTCAGGAACAACTGAAAAGAGCCATGTTTCCATTGGGATCTCTTCA</canonical>
            <polymorphic>AATACCTACAGGTATTGCTTGCTGATTTTTTTTGAGTTCGGTCAGTAAATTATTCTAATTAACAATTATTGTCGAAAATATGATATGGGATTGATCCTCTATTCATTTATTTTATGGGGTTATTCAGGGAGTCGCCAAAAAGGAAAAAAAACTCNNNNNNNNNNNNGCTGGAATTTCAGTTTTCCCCAAAGTTTCAGCCAGATTGGAACACTCTCCGAGTTTTCGCGGAGTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTAGAGGCTGCCTAGATTTGTGGCTAGATGAAAACACATTTTCGGCAGATGAAAGTTCCACGAGTTGTGATCGGCATGTCGGGAGGAGTTGATAGTGCAGTGTCAGCATTTTTGCTGAAGCAGAAAGGATTTGATGTAGTTGGATTACACATGGTAACTCATTCCAGACAAAGAGAATCAGAAAAGAAAAACATTTCGCAGATAAACTGGGATTCCCAAGAAGAAGGTTCATCYACTTGTCCACGATCGAAAGATGAAGCAGACGCTAGAAATGTGTGTAATAGATTAAATATCCCATTTCACACAGTTAACTTTGTGAAAGAATATTGGAATCATGTATTTCTGTGAGCTTGTGAAAAATTTAACATTTCAGACTACTGATTTCGTTTCAGAAAATTCTTGGAAAACTACAAAATCGGAAGAACCACAGTTCCAGATATTGATTGCAATTATTCAATCAAATTTGACGCTTTTCATAAAGTCGCCCAAGAAACGTTTGATGCTGATTTCATCGCAACTGGACACTACGCAACTACCAGTTTTGGAGACTTTCAGCAAAATAGAAAACATTCAGAAGGTGAAAATTAACATTAACTGCGAATCCGGATATTTGATTTTCTTTTAGCCATTCGCCTATTCTCTGGACGAGATCCTTTGAAAGATCAAACATTTTTTCTATGTACCGTAACTCAGGAACAACTGAAAAGAGCCATGTTTCCATTGGGATCTCTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTACACATGGTAACTCATTC</pcr_primer_p1>
		<pcr_primer_p2>GAAACGAAATCAGTAGTCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGATTACACATGGTAACTCATTCCAGACAAAGAGAATCAGAAAAGAAAAACATTTCGCAGATAAACTGGGATTCCCAAGAAGAAGGTTCATCTACTTGTCCACGATCGAAAGATGAAGCAGACGCTAGAAATGTGTGTAATAGATTAAATATCCCATTTCACACAGTTAACTTTGTGAAAGAATATTGGAATCATGTATTTCTGTGAGCTTGTGAAAAATTTAACATTTCAGACTACTGATTTCGTTTC</canonical_amplicon>
		<polymorphic_amplicon>GGATTACACATGGTAACTCATTCCAGACAAAGAGAATCAGAAAAGAAAAACATTTCGCAGATAAACTGGGATTCCCAAGAAGAAGGTTCATCYACTTGTCCACGATCGAAAGATGAAGCAGACGCTAGAAATGTGTGTAATAGATTAAATATCCCATTTCACACAGTTAACTTTGTGAAAGAATATTGGAATCATGTATTTCTGTGAGCTTGTGAAAAATTTAACATTTCAGACTACTGATTTCGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33273</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>824738</contig_pos>
        <strand>+</strand>
        <context>AAATGTGTGT[A/G]ATAGATTAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATCTACTTGTCCACGATCGAAAGATGAAGCAGACGCTAGAAATGTGTGT</left_flank>
        <right_flank>ATAGATTAAATATCCCATTTCACACAGTTAACTTTGTGAAAGAATATTGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTATTCTAATTAACAATTATTGTCGAAAATATGATATGGGATTGATCCTCTATTCATTTATTTTATGGGGTTATTCAGGGAGTCGCCAAAAAGGAAAAAAAACTCNNNNNNNNNNNNGCTGGAATTTCAGTTTTCCCCAAAGTTTCAGCCAGATTGGAACACTCTCCGAGTTTTCGCGGAGTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTAGAGGCTGCCTAGATTTGTGGCTAGATGAAAACACATTTTCGGCAGATGAAAGTTCCACGAGTTGTGATCGGCATGTCGGGAGGAGTTGATAGTGCAGTGTCAGCATTTTTGCTGAAGCAGAAAGGATTTGATGTAGTTGGATTACACATGGTAACTCATTCCAGACAAAGAGAATCAGAAAAGAAAAACATTTCGCAGATAAACTGGGATTCCCAAGAAGAAGGTTCATCTACTTGTCCACGATCGAAAGATGAAGCAGACGCTAGAAATGTGTGTAATAGATTAAATATCCCATTTCACACAGTTAACTTTGTGAAAGAATATTGGAATCATGTATTTCTGTGAGCTTGTGAAAAATTTAACATTTCAGACTACTGATTTCGTTTCAGAAAATTCTTGGAAAACTACAAAATCGGAAGAACCACAGTTCCAGATATTGATTGCAATTATTCAATCAAATTTGACGCTTTTCATAAAGTCGCCCAAGAAACGTTTGATGCTGATTTCATCGCAACTGGACACTACGCAACTACCAGTTTTGGAGACTTTCAGCAAAATAGAAAACATTCAGAAGGTGAAAATTAACATTAACTGCGAATCCGGATATTTGATTTTCTTTTAGCCATTCGCCTATTCTCTGGACGAGATCCTTTGAAAGATCAAACATTTTTTCTATGTACCGTAACTCAGGAACAACTGAAAAGAGCCATGTTTCCATTGGGATCTCTTCAGAAGTCAGAAGTAAAACGAATTGCAGAACAACAGGGTTTTCATAGA</canonical>
            <polymorphic>AAATTATTCTAATTAACAATTATTGTCGAAAATATGATATGGGATTGATCCTCTATTCATTTATTTTATGGGGTTATTCAGGGAGTCGCCAAAAAGGAAAAAAAACTCNNNNNNNNNNNNGCTGGAATTTCAGTTTTCCCCAAAGTTTCAGCCAGATTGGAACACTCTCCGAGTTTTCGCGGAGTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTAGAGGCTGCCTAGATTTGTGGCTAGATGAAAACACATTTTCGGCAGATGAAAGTTCCACGAGTTGTGATCGGCATGTCGGGAGGAGTTGATAGTGCAGTGTCAGCATTTTTGCTGAAGCAGAAAGGATTTGATGTAGTTGGATTACACATGGTAACTCATTCCAGACAAAGAGAATCAGAAAAGAAAAACATTTCGCAGATAAACTGGGATTCCCAAGAAGAAGGTTCATCTACTTGTCCACGATCGAAAGATGAAGCAGACGCTAGAAATGTGTGTRATAGATTAAATATCCCATTTCACACAGTTAACTTTGTGAAAGAATATTGGAATCATGTATTTCTGTGAGCTTGTGAAAAATTTAACATTTCAGACTACTGATTTCGTTTCAGAAAATTCTTGGAAAACTACAAAATCGGAAGAACCACAGTTCCAGATATTGATTGCAATTATTCAATCAAATTTGACGCTTTTCATAAAGTCGCCCAAGAAACGTTTGATGCTGATTTCATCGCAACTGGACACTACGCAACTACCAGTTTTGGAGACTTTCAGCAAAATAGAAAACATTCAGAAGGTGAAAATTAACATTAACTGCGAATCCGGATATTTGATTTTCTTTTAGCCATTCGCCTATTCTCTGGACGAGATCCTTTGAAAGATCAAACATTTTTTCTATGTACCGTAACTCAGGAACAACTGAAAAGAGCCATGTTTCCATTGGGATCTCTTCAGAAGTCAGAAGTAAAACGAATTGCAGAACAACAGGGTTTTCATAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTACACATGGTAACTCATTC</pcr_primer_p1>
		<pcr_primer_p2>GAAACGAAATCAGTAGTCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGATTACACATGGTAACTCATTCCAGACAAAGAGAATCAGAAAAGAAAAACATTTCGCAGATAAACTGGGATTCCCAAGAAGAAGGTTCATCTACTTGTCCACGATCGAAAGATGAAGCAGACGCTAGAAATGTGTGTAATAGATTAAATATCCCATTTCACACAGTTAACTTTGTGAAAGAATATTGGAATCATGTATTTCTGTGAGCTTGTGAAAAATTTAACATTTCAGACTACTGATTTCGTTTC</canonical_amplicon>
		<polymorphic_amplicon>GGATTACACATGGTAACTCATTCCAGACAAAGAGAATCAGAAAAGAAAAACATTTCGCAGATAAACTGGGATTCCCAAGAAGAAGGTTCATCTACTTGTCCACGATCGAAAGATGAAGCAGACGCTAGAAATGTGTGTRATAGATTAAATATCCCATTTCACACAGTTAACTTTGTGAAAGAATATTGGAATCATGTATTTCTGTGAGCTTGTGAAAAATTTAACATTTCAGACTACTGATTTCGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33274</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>824821</contig_pos>
        <strand>+</strand>
        <context>GTGAAAAATT[G/T]AACATTTCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTGTGAAAGAATATTGGAATCATGTATTTCTGTGAGCTTGTGAAAAATT</left_flank>
        <right_flank>AACATTTCAGACTACTGATTTCGTTTCAGAAAATTCTTGGAAAACTACAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTCGCCAAAAAGGAAAAAAAACTCNNNNNNNNNNNNGCTGGAATTTCAGTTTTCCCCAAAGTTTCAGCCAGATTGGAACACTCTCCGAGTTTTCGCGGAGTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTAGAGGCTGCCTAGATTTGTGGCTAGATGAAAACACATTTTCGGCAGATGAAAGTTCCACGAGTTGTGATCGGCATGTCGGGAGGAGTTGATAGTGCAGTGTCAGCATTTTTGCTGAAGCAGAAAGGATTTGATGTAGTTGGATTACACATGGTAACTCATTCCAGACAAAGAGAATCAGAAAAGAAAAACATTTCGCAGATAAACTGGGATTCCCAAGAAGAAGGTTCATCTACTTGTCCACGATCGAAAGATGAAGCAGACGCTAGAAATGTGTGTAATAGATTAAATATCCCATTTCACACAGTTAACTTTGTGAAAGAATATTGGAATCATGTATTTCTGTGAGCTTGTGAAAAATTTAACATTTCAGACTACTGATTTCGTTTCAGAAAATTCTTGGAAAACTACAAAATCGGAAGAACCACAGTTCCAGATATTGATTGCAATTATTCAATCAAATTTGACGCTTTTCATAAAGTCGCCCAAGAAACGTTTGATGCTGATTTCATCGCAACTGGACACTACGCAACTACCAGTTTTGGAGACTTTCAGCAAAATAGAAAACATTCAGAAGGTGAAAATTAACATTAACTGCGAATCCGGATATTTGATTTTCTTTTAGCCATTCGCCTATTCTCTGGACGAGATCCTTTGAAAGATCAAACATTTTTTCTATGTACCGTAACTCAGGAACAACTGAAAAGAGCCATGTTTCCATTGGGATCTCTTCAGAAGTCAGAAGTAAAACGAATTGCAGAACAACAGGGTTTTCATAGAGTCGTCAAAAAACCAGAGGTCTTTATCTATCGAATTAACAAAAATACAATTTTGAATTTCTAGAGTATGGGAATCTGTTTTAT</canonical>
            <polymorphic>AGTCGCCAAAAAGGAAAAAAAACTCNNNNNNNNNNNNGCTGGAATTTCAGTTTTCCCCAAAGTTTCAGCCAGATTGGAACACTCTCCGAGTTTTCGCGGAGTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTAGAGGCTGCCTAGATTTGTGGCTAGATGAAAACACATTTTCGGCAGATGAAAGTTCCACGAGTTGTGATCGGCATGTCGGGAGGAGTTGATAGTGCAGTGTCAGCATTTTTGCTGAAGCAGAAAGGATTTGATGTAGTTGGATTACACATGGTAACTCATTCCAGACAAAGAGAATCAGAAAAGAAAAACATTTCGCAGATAAACTGGGATTCCCAAGAAGAAGGTTCATCTACTTGTCCACGATCGAAAGATGAAGCAGACGCTAGAAATGTGTGTAATAGATTAAATATCCCATTTCACACAGTTAACTTTGTGAAAGAATATTGGAATCATGTATTTCTGTGAGCTTGTGAAAAATTKAACATTTCAGACTACTGATTTCGTTTCAGAAAATTCTTGGAAAACTACAAAATCGGAAGAACCACAGTTCCAGATATTGATTGCAATTATTCAATCAAATTTGACGCTTTTCATAAAGTCGCCCAAGAAACGTTTGATGCTGATTTCATCGCAACTGGACACTACGCAACTACCAGTTTTGGAGACTTTCAGCAAAATAGAAAACATTCAGAAGGTGAAAATTAACATTAACTGCGAATCCGGATATTTGATTTTCTTTTAGCCATTCGCCTATTCTCTGGACGAGATCCTTTGAAAGATCAAACATTTTTTCTATGTACCGTAACTCAGGAACAACTGAAAAGAGCCATGTTTCCATTGGGATCTCTTCAGAAGTCAGAAGTAAAACGAATTGCAGAACAACAGGGTTTTCATAGAGTCGTCAAAAAACCAGAGGTCTTTATCTATCGAATTAACAAAAATACAATTTTGAATTTCTAGAGTATGGGAATCTGTTTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>453 374 66 42 36 29</canonical_bands>
                <polymorphic_bands>489 374 66 42 29</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>423 224 223 54 48 22 6</canonical_bands>
                <polymorphic_bands>423 277 224 48 22 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAGAGAATCAGAAAAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CGATTTTGTAGTTTTCCAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAGAGAATCAGAAAAGAAAAACATTTCGCAGATAAACTGGGATTCCCAAGAAGAAGGTTCATCTACTTGTCCACGATCGAAAGATGAAGCAGACGCTAGAAATGTGTGTAATAGATTAAATATCCCATTTCACACAGTTAACTTTGTGAAAGAATATTGGAATCATGTATTTCTGTGAGCTTGTGAAAAATTTAACATTTCAGACTACTGATTTCGTTTCAGAAAATTCTTGGAAAACTACAAAATCG</canonical_amplicon>
		<polymorphic_amplicon>CAAAGAGAATCAGAAAAGAAAAACATTTCGCAGATAAACTGGGATTCCCAAGAAGAAGGTTCATCTACTTGTCCACGATCGAAAGATGAAGCAGACGCTAGAAATGTGTGTAATAGATTAAATATCCCATTTCACACAGTTAACTTTGTGAAAGAATATTGGAATCATGTATTTCTGTGAGCTTGTGAAAAATTKAACATTTCAGACTACTGATTTCGTTTCAGAAAATTCTTGGAAAACTACAAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33275</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>889676</contig_pos>
        <strand>+</strand>
        <context>GTTGCAAGTG[A/C]TTTTTTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCCTGGGCTCAAAATAAAAAAAAAAGATCGGCCCGACCCGTTGCAAGTG</left_flank>
        <right_flank>TTTTTTTTTCAAAAAAGTTTATTCATAGAGCACGAAGACGATGAAGCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATACAGGAGGAGGTGGATCGACAGAACATATTACAGTTGAAAAGAAAAATAGTTTGCCTATGGTATGACTTTTTAAAAATTAACTGTGAGCAATGATTCTTTTTAGATAACAGTCGACGGTCCAACTCCAATCAGTTCCAGACGATCATCAGGTCAATATTTGAAGAGAGATTCCCTTCAGATGAAAAAGAGATCTATCGAAGCAAAGATTCCATCGATTCAAGTTGAAGCTTCGGATGGTTTGTCGTTTTTTAATACTTGAAAAATCTGGGTTTTTCAAGTTCGAATTTTTTTTGTGAAAAACATTTGTATTTTTTTTAATGACACTCCCTTCTTGAACTTTTTGTTCGGCAGGAAGTTTGTCCATTTTTTTCTAAATGGACCACGAAAATTTTTCGAGAAGACAGGTTAAAAATATTGAAATCCCGGGTCTAGACCGGTCGGGCCGATCCTGGGCTCAAAATAAAAAAAAAAGATCGGCCCGACCCGTTGCAAGTGTTTTTTTTTTCAAAAAAGTTTATTCATAGAGCACGAAGACGATGAAGCTGAGTCGGCAGTTGAATATGTGGAATACAGTATTCCAGTTCCACAATTTCGAGTTCGTCATGTTACTGAAAGCGATAAGTCTGATCTTTCTGAAGATGACCTGGTATCGAGAGAAGTTGAACCACCGACTAACTTGAAGTAAGGATTTTGAAGCTGATATTCAAATTTATAATTCTTTGAGTTTTAGTATGTCTCGCGGACCACGACGCCATGCGCTGTACTCGACAATTGCAGATGCAATCGAAACTGAAGATTACTATTATGCGGTTTGTTACTTTTCCAATTTTCTTTTTTTTTGAAACCTATTAATTTACAGGACAGTCCCGTTCCAATGCCAATGACTCCAATTCAACCAGACGATGGATCTTACTTTGGAGAGACTGTGAGTTGGAACTAAAGTTTAATGAAAATATAGAAATATTTCAGGACCCGAAATTCCCTGGAGCTGAGAGC</canonical>
            <polymorphic>GATACAGGAGGAGGTGGATCGACAGAACATATTACAGTTGAAAAGAAAAATAGTTTGCCTATGGTATGACTTTTTAAAAATTAACTGTGAGCAATGATTCTTTTTAGATAACAGTCGACGGTCCAACTCCAATCAGTTCCAGACGATCATCAGGTCAATATTTGAAGAGAGATTCCCTTCAGATGAAAAAGAGATCTATCGAAGCAAAGATTCCATCGATTCAAGTTGAAGCTTCGGATGGTTTGTCGTTTTTTAATACTTGAAAAATCTGGGTTTTTCAAGTTCGAATTTTTTTTGTGAAAAACATTTGTATTTTTTTTAATGACACTCCCTTCTTGAACTTTTTGTTCGGCAGGAAGTTTGTCCATTTTTTTCTAAATGGACCACGAAAATTTTTCGAGAAGACAGGTTAAAAATATTGAAATCCCGGGTCTAGACCGGTCGGGCCGATCCTGGGCTCAAAATAAAAAAAAAAGATCGGCCCGACCCGTTGCAAGTGMTTTTTTTTTCAAAAAAGTTTATTCATAGAGCACGAAGACGATGAAGCTGAGTCGGCAGTTGAATATGTGGAATACAGTATTCCAGTTCCACAATTTCGAGTTCGTCATGTTACTGAAAGCGATAAGTCTGATCTTTCTGAAGATGACCTGGTATCGAGAGAAGTTGAACCACCGACTAACTTGAAGTAAGGATTTTGAAGCTGATATTCAAATTTATAATTCTTTGAGTTTTAGTATGTCTCGCGGACCACGACGCCATGCGCTGTACTCGACAATTGCAGATGCAATCGAAACTGAAGATTACTATTATGCGGTTTGTTACTTTTCCAATTTTCTTTTTTTTTGAAACCTATTAATTTACAGGACAGTCCCGTTCCAATGCCAATGACTCCAATTCAACCAGACGATGGATCTTACTTTGGAGAGACTGTGAGTTGGAACTAAAGTTTAATGAAAATATAGAAATATTTCAGGACCCGAAATTCCCTGGAGCTGAGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCCCTTCTTGAACTTTTTGT</pcr_primer_p1>
		<pcr_primer_p2>TGTATTCCACATATTCAACTGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTCCCTTCTTGAACTTTTTGTTCGGCAGGAAGTTTGTCCATTTTTTTCTAAATGGACCACGAAAATTTTTCGAGAAGACAGGTTAAAAATATTGAAATCCCGGGTCTAGACCGGTCGGGCCGATCCTGGGCTCAAAATAAAAAAAAAAGATCGGCCCGACCCGTTGCAAGTGTTTTTTTTTTCAAAAAAGTTTATTCATAGAGCACGAAGACGATGAAGCTGAGTCGGCAGTTGAATATGTGGAATACA</canonical_amplicon>
		<polymorphic_amplicon>ACTCCCTTCTTGAACTTTTTGTTCGGCAGGAAGTTTGTCCATTTTTTTCTAAATGGACCACGAAAATTTTTCGAGAAGACAGGTTAAAAATATTGAAATCCCGGGTCTAGACCGGTCGGGCCGATCCTGGGCTCAAAATAAAAAAAAAAGATCGGCCCGACCCGTTGCAAGTGMTTTTTTTTTCAAAAAAGTTTATTCATAGAGCACGAAGACGATGAAGCTGAGTCGGCAGTTGAATATGTGGAATACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33276</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>889766</contig_pos>
        <strand>+</strand>
        <context>TTCCAGTTCC[A/G]CAATTTCGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATGAAGCTGAGTCGGCAGTTGAATATGTGGAATACAGTATTCCAGTTCC</left_flank>
        <right_flank>CAATTTCGAGTTCGTCATGTTACTGAAAGCGATAAGTCTGATCTTTCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAATGATTCTTTTTAGATAACAGTCGACGGTCCAACTCCAATCAGTTCCAGACGATCATCAGGTCAATATTTGAAGAGAGATTCCCTTCAGATGAAAAAGAGATCTATCGAAGCAAAGATTCCATCGATTCAAGTTGAAGCTTCGGATGGTTTGTCGTTTTTTAATACTTGAAAAATCTGGGTTTTTCAAGTTCGAATTTTTTTTGTGAAAAACATTTGTATTTTTTTTAATGACACTCCCTTCTTGAACTTTTTGTTCGGCAGGAAGTTTGTCCATTTTTTTCTAAATGGACCACGAAAATTTTTCGAGAAGACAGGTTAAAAATATTGAAATCCCGGGTCTAGACCGGTCGGGCCGATCCTGGGCTCAAAATAAAAAAAAAAGATCGGCCCGACCCGTTGCAAGTGTTTTTTTTTTCAAAAAAGTTTATTCATAGAGCACGAAGACGATGAAGCTGAGTCGGCAGTTGAATATGTGGAATACAGTATTCCAGTTCCACAATTTCGAGTTCGTCATGTTACTGAAAGCGATAAGTCTGATCTTTCTGAAGATGACCTGGTATCGAGAGAAGTTGAACCACCGACTAACTTGAAGTAAGGATTTTGAAGCTGATATTCAAATTTATAATTCTTTGAGTTTTAGTATGTCTCGCGGACCACGACGCCATGCGCTGTACTCGACAATTGCAGATGCAATCGAAACTGAAGATTACTATTATGCGGTTTGTTACTTTTCCAATTTTCTTTTTTTTTGAAACCTATTAATTTACAGGACAGTCCCGTTCCAATGCCAATGACTCCAATTCAACCAGACGATGGATCTTACTTTGGAGAGACTGTGAGTTGGAACTAAAGTTTAATGAAAATATAGAAATATTTCAGGACCCGAAATTCCCTGGAGCTGAGAGCGATTATGAGTAGATTTGTTTTCAAAATGTTTGTTGTAGTTTTAATTTATTTTCAAACTTTTTTCATTTCATTTATATTCTTCCCTGTGTT</canonical>
            <polymorphic>GCAATGATTCTTTTTAGATAACAGTCGACGGTCCAACTCCAATCAGTTCCAGACGATCATCAGGTCAATATTTGAAGAGAGATTCCCTTCAGATGAAAAAGAGATCTATCGAAGCAAAGATTCCATCGATTCAAGTTGAAGCTTCGGATGGTTTGTCGTTTTTTAATACTTGAAAAATCTGGGTTTTTCAAGTTCGAATTTTTTTTGTGAAAAACATTTGTATTTTTTTTAATGACACTCCCTTCTTGAACTTTTTGTTCGGCAGGAAGTTTGTCCATTTTTTTCTAAATGGACCACGAAAATTTTTCGAGAAGACAGGTTAAAAATATTGAAATCCCGGGTCTAGACCGGTCGGGCCGATCCTGGGCTCAAAATAAAAAAAAAAGATCGGCCCGACCCGTTGCAAGTGTTTTTTTTTTCAAAAAAGTTTATTCATAGAGCACGAAGACGATGAAGCTGAGTCGGCAGTTGAATATGTGGAATACAGTATTCCAGTTCCRCAATTTCGAGTTCGTCATGTTACTGAAAGCGATAAGTCTGATCTTTCTGAAGATGACCTGGTATCGAGAGAAGTTGAACCACCGACTAACTTGAAGTAAGGATTTTGAAGCTGATATTCAAATTTATAATTCTTTGAGTTTTAGTATGTCTCGCGGACCACGACGCCATGCGCTGTACTCGACAATTGCAGATGCAATCGAAACTGAAGATTACTATTATGCGGTTTGTTACTTTTCCAATTTTCTTTTTTTTTGAAACCTATTAATTTACAGGACAGTCCCGTTCCAATGCCAATGACTCCAATTCAACCAGACGATGGATCTTACTTTGGAGAGACTGTGAGTTGGAACTAAAGTTTAATGAAAATATAGAAATATTTCAGGACCCGAAATTCCCTGGAGCTGAGAGCGATTATGAGTAGATTTGTTTTCAAAATGTTTGTTGTAGTTTTAATTTATTTTCAAACTTTTTTCATTTCATTTATATTCTTCCCTGTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>209 182 156 113 81 79 59 37 33 28 21 2</canonical_bands>
                <polymorphic_bands>209 182 156 113 102 79 59 37 33 28 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTATTCATAGAGCACGAAGAC</pcr_primer_p1>
		<pcr_primer_p2>GCGAGACATACTAAAACTCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>GTTTATTCATAGAGCACGAAGACGATGAAGCTGAGTCGGCAGTTGAATATGTGGAATACAGTATTCCAGTTCCACAATTTCGAGTTCGTCATGTTACTGAAAGCGATAAGTCTGATCTTTCTGAAGATGACCTGGTATCGAGAGAAGTTGAACCACCGACTAACTTGAAGTAAGGATTTTGAAGCTGATATTCAAATTTATAATTCTTTGAGTTTTAGTATGTCTCGC</canonical_amplicon>
		<polymorphic_amplicon>GTTTATTCATAGAGCACGAAGACGATGAAGCTGAGTCGGCAGTTGAATATGTGGAATACAGTATTCCAGTTCCRCAATTTCGAGTTCGTCATGTTACTGAAAGCGATAAGTCTGATCTTTCTGAAGATGACCTGGTATCGAGAGAAGTTGAACCACCGACTAACTTGAAGTAAGGATTTTGAAGCTGATATTCAAATTTATAATTCTTTGAGTTTTAGTATGTCTCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33277</snp_id>
        <super_contig>c008100988.Contig3</super_contig>
        <contig_pos>889803</contig_pos>
        <strand>+</strand>
        <context>AAGCGATAAG[C/T]CTGATCTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTATTCCAGTTCCACAATTTCGAGTTCGTCATGTTACTGAAAGCGATAAG</left_flank>
        <right_flank>CTGATCTTTCTGAAGATGACCTGGTATCGAGAGAAGTTGAACCACCGACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAATCAGTTCCAGACGATCATCAGGTCAATATTTGAAGAGAGATTCCCTTCAGATGAAAAAGAGATCTATCGAAGCAAAGATTCCATCGATTCAAGTTGAAGCTTCGGATGGTTTGTCGTTTTTTAATACTTGAAAAATCTGGGTTTTTCAAGTTCGAATTTTTTTTGTGAAAAACATTTGTATTTTTTTTAATGACACTCCCTTCTTGAACTTTTTGTTCGGCAGGAAGTTTGTCCATTTTTTTCTAAATGGACCACGAAAATTTTTCGAGAAGACAGGTTAAAAATATTGAAATCCCGGGTCTAGACCGGTCGGGCCGATCCTGGGCTCAAAATAAAAAAAAAAGATCGGCCCGACCCGTTGCAAGTGTTTTTTTTTTCAAAAAAGTTTATTCATAGAGCACGAAGACGATGAAGCTGAGTCGGCAGTTGAATATGTGGAATACAGTATTCCAGTTCCACAATTTCGAGTTCGTCATGTTACTGAAAGCGATAAGTCTGATCTTTCTGAAGATGACCTGGTATCGAGAGAAGTTGAACCACCGACTAACTTGAAGTAAGGATTTTGAAGCTGATATTCAAATTTATAATTCTTTGAGTTTTAGTATGTCTCGCGGACCACGACGCCATGCGCTGTACTCGACAATTGCAGATGCAATCGAAACTGAAGATTACTATTATGCGGTTTGTTACTTTTCCAATTTTCTTTTTTTTTGAAACCTATTAATTTACAGGACAGTCCCGTTCCAATGCCAATGACTCCAATTCAACCAGACGATGGATCTTACTTTGGAGAGACTGTGAGTTGGAACTAAAGTTTAATGAAAATATAGAAATATTTCAGGACCCGAAATTCCCTGGAGCTGAGAGCGATTATGAGTAGATTTGTTTTCAAAATGTTTGTTGTAGTTTTAATTTATTTTCAAACTTTTTTCATTTCATTTATATTCTTCCCTGTGTTAGCCTCACTTTACTTTGCTTTTCAAACATTCAGTTTA</canonical>
            <polymorphic>TCCAATCAGTTCCAGACGATCATCAGGTCAATATTTGAAGAGAGATTCCCTTCAGATGAAAAAGAGATCTATCGAAGCAAAGATTCCATCGATTCAAGTTGAAGCTTCGGATGGTTTGTCGTTTTTTAATACTTGAAAAATCTGGGTTTTTCAAGTTCGAATTTTTTTTGTGAAAAACATTTGTATTTTTTTTAATGACACTCCCTTCTTGAACTTTTTGTTCGGCAGGAAGTTTGTCCATTTTTTTCTAAATGGACCACGAAAATTTTTCGAGAAGACAGGTTAAAAATATTGAAATCCCGGGTCTAGACCGGTCGGGCCGATCCTGGGCTCAAAATAAAAAAAAAAGATCGGCCCGACCCGTTGCAAGTGTTTTTTTTTTCAAAAAAGTTTATTCATAGAGCACGAAGACGATGAAGCTGAGTCGGCAGTTGAATATGTGGAATACAGTATTCCAGTTCCACAATTTCGAGTTCGTCATGTTACTGAAAGCGATAAGYCTGATCTTTCTGAAGATGACCTGGTATCGAGAGAAGTTGAACCACCGACTAACTTGAAGTAAGGATTTTGAAGCTGATATTCAAATTTATAATTCTTTGAGTTTTAGTATGTCTCGCGGACCACGACGCCATGCGCTGTACTCGACAATTGCAGATGCAATCGAAACTGAAGATTACTATTATGCGGTTTGTTACTTTTCCAATTTTCTTTTTTTTTGAAACCTATTAATTTACAGGACAGTCCCGTTCCAATGCCAATGACTCCAATTCAACCAGACGATGGATCTTACTTTGGAGAGACTGTGAGTTGGAACTAAAGTTTAATGAAAATATAGAAATATTTCAGGACCCGAAATTCCCTGGAGCTGAGAGCGATTATGAGTAGATTTGTTTTCAAAATGTTTGTTGTAGTTTTAATTTATTTTCAAACTTTTTTCATTTCATTTATATTCTTCCCTGTGTTAGCCTCACTTTACTTTGCTTTTCAAACATTCAGTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>489 393 55 54 9</canonical_bands>
                <polymorphic_bands>489 402 55 54</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTATTCATAGAGCACGAAGAC</pcr_primer_p1>
		<pcr_primer_p2>GCGAGACATACTAAAACTCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>GTTTATTCATAGAGCACGAAGACGATGAAGCTGAGTCGGCAGTTGAATATGTGGAATACAGTATTCCAGTTCCACAATTTCGAGTTCGTCATGTTACTGAAAGCGATAAGTCTGATCTTTCTGAAGATGACCTGGTATCGAGAGAAGTTGAACCACCGACTAACTTGAAGTAAGGATTTTGAAGCTGATATTCAAATTTATAATTCTTTGAGTTTTAGTATGTCTCGC</canonical_amplicon>
		<polymorphic_amplicon>GTTTATTCATAGAGCACGAAGACGATGAAGCTGAGTCGGCAGTTGAATATGTGGAATACAGTATTCCAGTTCCACAATTTCGAGTTCGTCATGTTACTGAAAGCGATAAGYCTGATCTTTCTGAAGATGACCTGGTATCGAGAGAAGTTGAACCACCGACTAACTTGAAGTAAGGATTTTGAAGCTGATATTCAAATTTATAATTCTTTGAGTTTTAGTATGTCTCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33278</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>60864</contig_pos>
        <strand>+</strand>
        <context>AGCGGAAAAA[A/C]TATGCCTTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCAGCTGTTTGCAAAGCTTTTTTTTGGAATATTTTGAACAAGCGGAAAAA</left_flank>
        <right_flank>TATGCCTTCCAATTTTCTACTTATTCATCAACGATGAGCGCGCTTTAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATTTTCCGATTTGTTCGAAGCTAGAAAATGACAATTTTTAAATATTACTGTTTCACAATTCCTAAAATTCTTGAGGGGTTTCTAGAAACTTGTTTATATTCATCAATAATTTTTTGGAAAATTCGAAGTTGGGAATTTTGAAAATTACTGTTTCAAAATCTTTGTATTTTTAAAAAATATCCCAAAATTTATTGGTTCGCCTTCAAGTGATATATCTCTGATTGACACCTTTTTCTGAAGAATTTCAATGTCGGAAGTTTGAAAGTTACTGTTTCAAACTTCCTTAAATTCTTGAGGTATTTCTAAAAAACTTGCTGCTCCGGGCTCGTTCGGTACCTAGCAATTGTTTTCTGTAACATTCTAAATCTCAGAATTTGAAAATTGCTGTTTCAAATTTTTGCATTTCTTAAGAGAATTCTAAAAACTTGCTGATTCCGCTGAATTCCCCAGCTGTTTGCAAAGCTTTTTTTTGGAATATTTTGAACAAGCGGAAAAATTATGCCTTCCAATTTTCTACTTATTCATCAACGATGAGCGCGCTTTAATGTGAATGACTCTGAATCCTGCAAGAAAATTACTGTTTCATTTTCCCGGACCAGTTTTATGACTTTCTTAGTTCTCGATGACCAAACAAATCGTATAGTATCAAAAGTTCACCACCATAAAAAAAGCACATGGTTTCTCTTTTTCTCTGGACCCTCTCATCTTTCCAATGTTTCTAGGAGAGTGTACGAAGAACTGTGATTTGTTGAAACTTGCAATTGAAGAGAAAAAAGGAAAGTACGATTTTTTTGATATCACTGATAACACCCATTTCGACACGTACACACAAAACAATATAGTTCAGAATGGAGAATATTGGTTCCTGGTACAAGGTGAACATTGGCAAACAGATGAATTTGAAAATTACTGTTTCACATTTCAATAAGATTTAGTACTGAACTCGAGAACACTGTTCGGATCAACATCAAAGGTTGTCTACGGAAGCGCTTTTTTA</canonical>
            <polymorphic>AAAATTTTCCGATTTGTTCGAAGCTAGAAAATGACAATTTTTAAATATTACTGTTTCACAATTCCTAAAATTCTTGAGGGGTTTCTAGAAACTTGTTTATATTCATCAATAATTTTTTGGAAAATTCGAAGTTGGGAATTTTGAAAATTACTGTTTCAAAATCTTTGTATTTTTAAAAAATATCCCAAAATTTATTGGTTCGCCTTCAAGTGATATATCTCTGATTGACACCTTTTTCTGAAGAATTTCAATGTCGGAAGTTTGAAAGTTACTGTTTCAAACTTCCTTAAATTCTTGAGGTATTTCTAAAAAACTTGCTGCTCCGGGCTCGTTCGGTACCTAGCAATTGTTTTCTGTAACATTCTAAATCTCAGAATTTGAAAATTGCTGTTTCAAATTTTTGCATTTCTTAAGAGAATTCTAAAAACTTGCTGATTCCGCTGAATTCCCCAGCTGTTTGCAAAGCTTTTTTTTGGAATATTTTGAACAAGCGGAAAAAMTATGCCTTCCAATTTTCTACTTATTCATCAACGATGAGCGCGCTTTAATGTGAATGACTCTGAATCCTGCAAGAAAATTACTGTTTCATTTTCCCGGACCAGTTTTATGACTTTCTTAGTTCTCGATGACCAAACAAATCGTATAGTATCAAAAGTTCACCACCATAAAAAAAGCACATGGTTTCTCTTTTTCTCTGGACCCTCTCATCTTTCCAATGTTTCTAGGAGAGTGTACGAAGAACTGTGATTTGTTGAAACTTGCAATTGAAGAGAAAAAAGGAAAGTACGATTTTTTTGATATCACTGATAACACCCATTTCGACACGTACACACAAAACAATATAGTTCAGAATGGAGAATATTGGTTCCTGGTACAAGGTGAACATTGGCAAACAGATGAATTTGAAAATTACTGTTTCACATTTCAATAAGATTTAGTACTGAACTCGAGAACACTGTTCGGATCAACATCAAAGGTTGTCTACGGAAGCGCTTTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>187 137 93 65 55 55 54 46 43 42 33 30 27 24 21 14 13 13 12 9 9 8 8 2</canonical_bands>
                <polymorphic_bands>187 137 93 67 65 55 55 46 43 42 33 30 27 24 21 14 13 12 9 9 8 8 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTCTAAAAACTTGCTGATTC</pcr_primer_p1>
		<pcr_primer_p2>ATGGTGGTGAACTTTTGATACTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAATTCTAAAAACTTGCTGATTCCGCTGAATTCCCCAGCTGTTTGCAAAGCTTTTTTTTGGAATATTTTGAACAAGCGGAAAAATTATGCCTTCCAATTTTCTACTTATTCATCAACGATGAGCGCGCTTTAATGTGAATGACTCTGAATCCTGCAAGAAAATTACTGTTTCATTTTCCCGGACCAGTTTTATGACTTTCTTAGTTCTCGATGACCAAACAAATCGTATAGTATCAAAAGTTCACCACCAT</canonical_amplicon>
		<polymorphic_amplicon>GAATTCTAAAAACTTGCTGATTCCGCTGAATTCCCCAGCTGTTTGCAAAGCTTTTTTTTGGAATATTTTGAACAAGCGGAAAAAMTATGCCTTCCAATTTTCTACTTATTCATCAACGATGAGCGCGCTTTAATGTGAATGACTCTGAATCCTGCAAGAAAATTACTGTTTCATTTTCCCGGACCAGTTTTATGACTTTCTTAGTTCTCGATGACCAAACAAATCGTATAGTATCAAAAGTTCACCACCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33279</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>63051</contig_pos>
        <strand>+</strand>
        <context>AAAATCGGCT[A/G]AAAAATAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCT</left_flank>
        <right_flank>AAAAATAAAAAAGTTATAGTAATTGCGAACATTACTGTTTCAAGTTTTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGGGTCATCAAGAATACCAAAAATTAAAGAATAGGTTTATGAATATAGATATAATTTTTCCATGGAACAGAAAAACATTTTTTAAATACGAAACATATCGAATAAATAAAGAAAACTTAGATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGTTCATGTATCTGAGAGGAGTGTTAGGCCCAACTAAGTTCCACTTACGAACAAGGACTATTTTTTTTCAAATTCAAATAATTTGAGTTGTGTAAAATCTTACGCTCTTTCTAATCGTATAACTTTTTTAGCTCTAGCATTTTTGTAAAACGAGATATAGGTAAGTTTCTGTGCAAGCTTATTTTTCTTACTGTATCGCTAGACTTGTACAGTAAGCCTTGAGTTTCAGTTGCTAAAAGAGGATTTTGAGTTTGCTAATTTTGACAAATCACCAAATCAAAACATTCTAAAAAAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCTAAAAAATAAAAAAGTTATAGTAATTGCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGGATTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGA</canonical>
            <polymorphic>AAGGGGTCATCAAGAATACCAAAAATTAAAGAATAGGTTTATGAATATAGATATAATTTTTCCATGGAACAGAAAAACATTTTTTAAATACGAAACATATCGAATAAATAAAGAAAACTTAGATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGTTCATGTATCTGAGAGGAGTGTTAGGCCCAACTAAGTTCCACTTACGAACAAGGACTATTTTTTTTCAAATTCAAATAATTTGAGTTGTGTAAAATCTTACGCTCTTTCTAATCGTATAACTTTTTTAGCTCTAGCATTTTTGTAAAACGAGATATAGGTAAGTTTCTGTGCAAGCTTATTTTTCTTACTGTATCGCTAGACTTGTACAGTAAGCCTTGAGTTTCAGTTGCTAAAAGAGGATTTTGAGTTTGCTAATTTTGACAAATCACCAAATCAAAACATTCTAAAAAAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCTRAAAAATAAAAAAGTTATAGTAATTGCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGGATTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAAGTTTCTGTGCAAGCTTATT</pcr_primer_p1>
		<pcr_primer_p2>CCTAGAAAACAAAACTAAAACTTGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTAAGTTTCTGTGCAAGCTTATTTTTCTTACTGTATCGCTAGACTTGTACAGTAAGCCTTGAGTTTCAGTTGCTAAAAGAGGATTTTGAGTTTGCTAATTTTGACAAATCACCAAATCAAAACATTCTAAAAAAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCTAAAAAATAAAAAAGTTATAGTAATTGCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGG</canonical_amplicon>
		<polymorphic_amplicon>GTAAGTTTCTGTGCAAGCTTATTTTTCTTACTGTATCGCTAGACTTGTACAGTAAGCCTTGAGTTTCAGTTGCTAAAAGAGGATTTTGAGTTTGCTAATTTTGACAAATCACCAAATCAAAACATTCTAAAAAAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCTRAAAAATAAAAAAGTTATAGTAATTGCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33280</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>63076</contig_pos>
        <strand></strand>
        <context>TATAGTAATT[G/A]CGAACATTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGTATAAAATTCTAGAAAATCGGCTAAAAAATAAAAAAGTTATAGTAATT</left_flank>
        <right_flank>CGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGGATTCGAAATGG</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAGAATAGGTTTATGAATATAGATATAATTTTTCCATGGAACAGAAAAACATTTTTTAAATACGAAACATATCGAATAAATAAAGAAAACTTAGATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGTTCATGTATCTGAGAGGAGTGTTAGGCCCAACTAAGTTCCACTTACGAACAAGGACTATTTTTTTTCAAATTCAAATAATTTGAGTTGTGTAAAATCTTACGCTCTTTCTAATCGTATAACTTTTTTAGCTCTAGCATTTTTGTAAAACGAGATATAGGTAAGTTTCTGTGCAAGCTTATTTTTCTTACTGTATCGCTAGACTTGTACAGTAAGCCTTGAGTTTCAGTTGCTAAAAGAGGATTTTGAGTTTGCTAATTTTGACAAATCACCAAATCAAAACATTCTAAAAAAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCTAAAAAATAAAAAAGTTATAGTAATTGCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGGATTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCT</canonical>
            <polymorphic>TTAAAGAATAGGTTTATGAATATAGATATAATTTTTCCATGGAACAGAAAAACATTTTTTAAATACGAAACATATCGAATAAATAAAGAAAACTTAGATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGTTCATGTATCTGAGAGGAGTGTTAGGCCCAACTAAGTTCCACTTACGAACAAGGACTATTTTTTTTCAAATTCAAATAATTTGAGTTGTGTAAAATCTTACGCTCTTTCTAATCGTATAACTTTTTTAGCTCTAGCATTTTTGTAAAACGAGATATAGGTAAGTTTCTGTGCAAGCTTATTTTTCTTACTGTATCGCTAGACTTGTACAGTAAGCCTTGAGTTTCAGTTGCTAAAAGAGGATTTTGAGTTTGCTAATTTTGACAAATCACCAAATCAAAACATTCTAAAAAAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCTAAAAAATAAAAAAGTTATAGTAATTRCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGGATTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCAAATCAAAACATTCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCAACATTATATTCAAAAGTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACCAAATCAAAACATTCTAAAAAAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCTAAAAAATAAAAAAGTTATAGTAATTGCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGGATTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAA</canonical_amplicon>
		<polymorphic_amplicon>ACCAAATCAAAACATTCTAAAAAAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCTAAAAAATAAAAAAGTTATAGTAATTRCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGGATTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33281</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>63116</contig_pos>
        <strand>+</strand>
        <context>GTTTTCTAGG[A/G]TTCGAAATGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATAGTAATTGCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGG</left_flank>
        <right_flank>TTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAACAGAAAAACATTTTTTAAATACGAAACATATCGAATAAATAAAGAAAACTTAGATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGTTCATGTATCTGAGAGGAGTGTTAGGCCCAACTAAGTTCCACTTACGAACAAGGACTATTTTTTTTCAAATTCAAATAATTTGAGTTGTGTAAAATCTTACGCTCTTTCTAATCGTATAACTTTTTTAGCTCTAGCATTTTTGTAAAACGAGATATAGGTAAGTTTCTGTGCAAGCTTATTTTTCTTACTGTATCGCTAGACTTGTACAGTAAGCCTTGAGTTTCAGTTGCTAAAAGAGGATTTTGAGTTTGCTAATTTTGACAAATCACCAAATCAAAACATTCTAAAAAAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCTAAAAAATAAAAAAGTTATAGTAATTGCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGGATTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTT</canonical>
            <polymorphic>GGAACAGAAAAACATTTTTTAAATACGAAACATATCGAATAAATAAAGAAAACTTAGATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGTTCATGTATCTGAGAGGAGTGTTAGGCCCAACTAAGTTCCACTTACGAACAAGGACTATTTTTTTTCAAATTCAAATAATTTGAGTTGTGTAAAATCTTACGCTCTTTCTAATCGTATAACTTTTTTAGCTCTAGCATTTTTGTAAAACGAGATATAGGTAAGTTTCTGTGCAAGCTTATTTTTCTTACTGTATCGCTAGACTTGTACAGTAAGCCTTGAGTTTCAGTTGCTAAAAGAGGATTTTGAGTTTGCTAATTTTGACAAATCACCAAATCAAAACATTCTAAAAAAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCTAAAAAATAAAAAAGTTATAGTAATTGCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGGRTTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAAATCAAAACATTCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCAACATTATATTCAAAAGTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACCAAATCAAAACATTCTAAAAAAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCTAAAAAATAAAAAAGTTATAGTAATTGCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGGATTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAA</canonical_amplicon>
		<polymorphic_amplicon>ACCAAATCAAAACATTCTAAAAAAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCTAAAAAATAAAAAAGTTATAGTAATTGCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGGRTTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33282</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>63193</contig_pos>
        <strand>+</strand>
        <context>AAAACTTAAA[C/T]RAAAATTAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAA</left_flank>
        <right_flank>GAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAATTGAGCTCAAAGTTCATGTATCTGAGAGGAGTGTTAGGCCCAACTAAGTTCCACTTACGAACAAGGACTATTTTTTTTCAAATTCAAATAATTTGAGTTGTGTAAAATCTTACGCTCTTTCTAATCGTATAACTTTTTTAGCTCTAGCATTTTTGTAAAACGAGATATAGGTAAGTTTCTGTGCAAGCTTATTTTTCTTACTGTATCGCTAGACTTGTACAGTAAGCCTTGAGTTTCAGTTGCTAAAAGAGGATTTTGAGTTTGCTAATTTTGACAAATCACCAAATCAAAACATTCTAAAAAAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCTAAAAAATAAAAAAGTTATAGTAATTGCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGGATTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTC</canonical>
            <polymorphic>GATAATTGAGCTCAAAGTTCATGTATCTGAGAGGAGTGTTAGGCCCAACTAAGTTCCACTTACGAACAAGGACTATTTTTTTTCAAATTCAAATAATTTGAGTTGTGTAAAATCTTACGCTCTTTCTAATCGTATAACTTTTTTAGCTCTAGCATTTTTGTAAAACGAGATATAGGTAAGTTTCTGTGCAAGCTTATTTTTCTTACTGTATCGCTAGACTTGTACAGTAAGCCTTGAGTTTCAGTTGCTAAAAGAGGATTTTGAGTTTGCTAATTTTGACAAATCACCAAATCAAAACATTCTAAAAAAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCTAAAAAATAAAAAAGTTATAGTAATTGCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGGATTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAAYGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTATTTGAACAGTATTAAAAGATT</pcr_primer_p1>
		<pcr_primer_p2>AGCTAATTTTTGAGGTATTTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>TGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCT</canonical_amplicon>
		<polymorphic_amplicon>TGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAAYGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33283</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>63194</contig_pos>
        <strand>+</strand>
        <context>AAACTTAAAY[A/G]AAAATTAATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAAC</left_flank>
        <right_flank>AAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAATTGAGCTCAAAGTTCATGTATCTGAGAGGAGTGTTAGGCCCAACTAAGTTCCACTTACGAACAAGGACTATTTTTTTTCAAATTCAAATAATTTGAGTTGTGTAAAATCTTACGCTCTTTCTAATCGTATAACTTTTTTAGCTCTAGCATTTTTGTAAAACGAGATATAGGTAAGTTTCTGTGCAAGCTTATTTTTCTTACTGTATCGCTAGACTTGTACAGTAAGCCTTGAGTTTCAGTTGCTAAAAGAGGATTTTGAGTTTGCTAATTTTGACAAATCACCAAATCAAAACATTCTAAAAAAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCTAAAAAATAAAAAAGTTATAGTAATTGCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGGATTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCT</canonical>
            <polymorphic>ATAATTGAGCTCAAAGTTCATGTATCTGAGAGGAGTGTTAGGCCCAACTAAGTTCCACTTACGAACAAGGACTATTTTTTTTCAAATTCAAATAATTTGAGTTGTGTAAAATCTTACGCTCTTTCTAATCGTATAACTTTTTTAGCTCTAGCATTTTTGTAAAACGAGATATAGGTAAGTTTCTGTGCAAGCTTATTTTTCTTACTGTATCGCTAGACTTGTACAGTAAGCCTTGAGTTTCAGTTGCTAAAAGAGGATTTTGAGTTTGCTAATTTTGACAAATCACCAAATCAAAACATTCTAAAAAAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCTAAAAAATAAAAAAGTTATAGTAATTGCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGGATTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACRAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTATTTGAACAGTATTAAAAGATT</pcr_primer_p1>
		<pcr_primer_p2>AGCTAATTTTTGAGGTATTTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>TGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCT</canonical_amplicon>
		<polymorphic_amplicon>TGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACRAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33284</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>63233</contig_pos>
        <strand>+</strand>
        <context>TGTTGAAAAA[A/T]GTGTCGCTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAA</left_flank>
        <right_flank>GTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGCCCAACTAAGTTCCACTTACGAACAAGGACTATTTTTTTTCAAATTCAAATAATTTGAGTTGTGTAAAATCTTACGCTCTTTCTAATCGTATAACTTTTTTAGCTCTAGCATTTTTGTAAAACGAGATATAGGTAAGTTTCTGTGCAAGCTTATTTTTCTTACTGTATCGCTAGACTTGTACAGTAAGCCTTGAGTTTCAGTTGCTAAAAGAGGATTTTGAGTTTGCTAATTTTGACAAATCACCAAATCAAAACATTCTAAAAAAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCTAAAAAATAAAAAAGTTATAGTAATTGCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGGATTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGAT</canonical>
            <polymorphic>AGGCCCAACTAAGTTCCACTTACGAACAAGGACTATTTTTTTTCAAATTCAAATAATTTGAGTTGTGTAAAATCTTACGCTCTTTCTAATCGTATAACTTTTTTAGCTCTAGCATTTTTGTAAAACGAGATATAGGTAAGTTTCTGTGCAAGCTTATTTTTCTTACTGTATCGCTAGACTTGTACAGTAAGCCTTGAGTTTCAGTTGCTAAAAGAGGATTTTGAGTTTGCTAATTTTGACAAATCACCAAATCAAAACATTCTAAAAAAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCTAAAAAATAAAAAAGTTATAGTAATTGCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGGATTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAAWGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTATTTGAACAGTATTAAAAGATT</pcr_primer_p1>
		<pcr_primer_p2>AGCTAATTTTTGAGGTATTTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>TGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCT</canonical_amplicon>
		<polymorphic_amplicon>TGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAAWGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33285</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>63246</contig_pos>
        <strand>+</strand>
        <context>GTCGCTGACC[A/T]AAAATTCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACC</left_flank>
        <right_flank>AAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCACTTACGAACAAGGACTATTTTTTTTCAAATTCAAATAATTTGAGTTGTGTAAAATCTTACGCTCTTTCTAATCGTATAACTTTTTTAGCTCTAGCATTTTTGTAAAACGAGATATAGGTAAGTTTCTGTGCAAGCTTATTTTTCTTACTGTATCGCTAGACTTGTACAGTAAGCCTTGAGTTTCAGTTGCTAAAAGAGGATTTTGAGTTTGCTAATTTTGACAAATCACCAAATCAAAACATTCTAAAAAAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCTAAAAAATAAAAAAGTTATAGTAATTGCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGGATTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATT</canonical>
            <polymorphic>TTCCACTTACGAACAAGGACTATTTTTTTTCAAATTCAAATAATTTGAGTTGTGTAAAATCTTACGCTCTTTCTAATCGTATAACTTTTTTAGCTCTAGCATTTTTGTAAAACGAGATATAGGTAAGTTTCTGTGCAAGCTTATTTTTCTTACTGTATCGCTAGACTTGTACAGTAAGCCTTGAGTTTCAGTTGCTAAAAGAGGATTTTGAGTTTGCTAATTTTGACAAATCACCAAATCAAAACATTCTAAAAAAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCTAAAAAATAAAAAAGTTATAGTAATTGCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGGATTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCWAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTATTTGAACAGTATTAAAAGATT</pcr_primer_p1>
		<pcr_primer_p2>AGCTAATTTTTGAGGTATTTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>TGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCT</canonical_amplicon>
		<polymorphic_amplicon>TGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCWAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33286</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>63306</contig_pos>
        <strand>+</strand>
        <context>CAAAAGGGGA[C/T]TTTGAGCATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGA</left_flank>
        <right_flank>TTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTACGCTCTTTCTAATCGTATAACTTTTTTAGCTCTAGCATTTTTGTAAAACGAGATATAGGTAAGTTTCTGTGCAAGCTTATTTTTCTTACTGTATCGCTAGACTTGTACAGTAAGCCTTGAGTTTCAGTTGCTAAAAGAGGATTTTGAGTTTGCTAATTTTGACAAATCACCAAATCAAAACATTCTAAAAAAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCTAAAAAATAAAAAAGTTATAGTAATTGCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGGATTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCA</canonical>
            <polymorphic>CTTACGCTCTTTCTAATCGTATAACTTTTTTAGCTCTAGCATTTTTGTAAAACGAGATATAGGTAAGTTTCTGTGCAAGCTTATTTTTCTTACTGTATCGCTAGACTTGTACAGTAAGCCTTGAGTTTCAGTTGCTAAAAGAGGATTTTGAGTTTGCTAATTTTGACAAATCACCAAATCAAAACATTCTAAAAAAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCTAAAAAATAAAAAAGTTATAGTAATTGCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGGATTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGAYTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTATTTGAACAGTATTAAAAGATT</pcr_primer_p1>
		<pcr_primer_p2>AGCTAATTTTTGAGGTATTTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>TGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCT</canonical_amplicon>
		<polymorphic_amplicon>TGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGAYTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33287</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>63321</contig_pos>
        <strand>+</strand>
        <context>AGCATGCTAA[A/G]GATTTAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAA</left_flank>
        <right_flank>GATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGTATAACTTTTTTAGCTCTAGCATTTTTGTAAAACGAGATATAGGTAAGTTTCTGTGCAAGCTTATTTTTCTTACTGTATCGCTAGACTTGTACAGTAAGCCTTGAGTTTCAGTTGCTAAAAGAGGATTTTGAGTTTGCTAATTTTGACAAATCACCAAATCAAAACATTCTAAAAAAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCTAAAAAATAAAAAAGTTATAGTAATTGCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGGATTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAG</canonical>
            <polymorphic>ATCGTATAACTTTTTTAGCTCTAGCATTTTTGTAAAACGAGATATAGGTAAGTTTCTGTGCAAGCTTATTTTTCTTACTGTATCGCTAGACTTGTACAGTAAGCCTTGAGTTTCAGTTGCTAAAAGAGGATTTTGAGTTTGCTAATTTTGACAAATCACCAAATCAAAACATTCTAAAAAAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCTAAAAAATAAAAAAGTTATAGTAATTGCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGGATTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAARGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>496 206 179 94 25</canonical_bands>
                <polymorphic_bands>702 179 94 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCTATTTGAACAGTATTAAAAGATT</pcr_primer_p1>
		<pcr_primer_p2>AGCTAATTTTTGAGGTATTTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>TGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCT</canonical_amplicon>
		<polymorphic_amplicon>TGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAARGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33288</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>63343</contig_pos>
        <strand>+</strand>
        <context>TGTCTTTTTA[A/T]AAATTTTWTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTA</left_flank>
        <right_flank>AAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCATTTTTGTAAAACGAGATATAGGTAAGTTTCTGTGCAAGCTTATTTTTCTTACTGTATCGCTAGACTTGTACAGTAAGCCTTGAGTTTCAGTTGCTAAAAGAGGATTTTGAGTTTGCTAATTTTGACAAATCACCAAATCAAAACATTCTAAAAAAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCTAAAAAATAAAAAAGTTATAGTAATTGCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGGATTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCA</canonical>
            <polymorphic>AGCATTTTTGTAAAACGAGATATAGGTAAGTTTCTGTGCAAGCTTATTTTTCTTACTGTATCGCTAGACTTGTACAGTAAGCCTTGAGTTTCAGTTGCTAAAAGAGGATTTTGAGTTTGCTAATTTTGACAAATCACCAAATCAAAACATTCTAAAAAAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCTAAAAAATAAAAAAGTTATAGTAATTGCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGGATTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTAWAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>499 311 190</canonical_bands>
                <polymorphic_bands>810 190</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCTATTTGAACAGTATTAAAAGATT</pcr_primer_p1>
		<pcr_primer_p2>AGCTAATTTTTGAGGTATTTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>TGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCT</canonical_amplicon>
		<polymorphic_amplicon>TGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTAWAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33289</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>63351</contig_pos>
        <strand>+</strand>
        <context>TAWAAATTTT[A/T]TGAAAGTGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTT</left_flank>
        <right_flank>TGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTAAAACGAGATATAGGTAAGTTTCTGTGCAAGCTTATTTTTCTTACTGTATCGCTAGACTTGTACAGTAAGCCTTGAGTTTCAGTTGCTAAAAGAGGATTTTGAGTTTGCTAATTTTGACAAATCACCAAATCAAAACATTCTAAAAAAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCTAAAAAATAAAAAAGTTATAGTAATTGCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGGATTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCC</canonical>
            <polymorphic>TGTAAAACGAGATATAGGTAAGTTTCTGTGCAAGCTTATTTTTCTTACTGTATCGCTAGACTTGTACAGTAAGCCTTGAGTTTCAGTTGCTAAAAGAGGATTTTGAGTTTGCTAATTTTGACAAATCACCAAATCAAAACATTCTAAAAAAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCTAAAAAATAAAAAAGTTATAGTAATTGCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGGATTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTWTGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTATTTGAACAGTATTAAAAGATT</pcr_primer_p1>
		<pcr_primer_p2>AGCTAATTTTTGAGGTATTTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>TGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCT</canonical_amplicon>
		<polymorphic_amplicon>TGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTWTGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33290</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>63368</contig_pos>
        <strand>+</strand>
        <context>TGCTTCAAAC[G/T]TCCTGCGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAAC</left_flank>
        <right_flank>TCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAAGTTTCTGTGCAAGCTTATTTTTCTTACTGTATCGCTAGACTTGTACAGTAAGCCTTGAGTTTCAGTTGCTAAAAGAGGATTTTGAGTTTGCTAATTTTGACAAATCACCAAATCAAAACATTCTAAAAAAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCTAAAAAATAAAAAAGTTATAGTAATTGCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGGATTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAA</canonical>
            <polymorphic>GTAAGTTTCTGTGCAAGCTTATTTTTCTTACTGTATCGCTAGACTTGTACAGTAAGCCTTGAGTTTCAGTTGCTAAAAGAGGATTTTGAGTTTGCTAATTTTGACAAATCACCAAATCAAAACATTCTAAAAAAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCTAAAAAATAAAAAAGTTATAGTAATTGCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGGATTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACKTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTATTTGAACAGTATTAAAAGATT</pcr_primer_p1>
		<pcr_primer_p2>CTCGCCTCCTTTAAGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>319</pcr_amplicon_size>
		<canonical_amplicon>TGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAG</canonical_amplicon>
		<polymorphic_amplicon>TGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACKTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33291</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>63484</contig_pos>
        <strand>+</strand>
        <context>GTTTGGGGGA[A/C]GAAATCGCAC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGA</left_flank>
        <right_flank>GAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAACATTCTAAAAAAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCTAAAAAATAAAAAAGTTATAGTAATTGCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGGATTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAAT</canonical>
            <polymorphic>TCAAAACATTCTAAAAAAGCGCTTCAACTTTTCTTCGTTTTGGTATAAAATTCTAGAAAATCGGCTAAAAAATAAAAAAGTTATAGTAATTGCGAACATTACTGTTTCAAGTTTTAGTTTTGTTTTCTAGGATTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGAMGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGTTTTGATACAAAAATACCT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTCTAGAGAACCCTTATGA</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>GCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAA</canonical_amplicon>
		<polymorphic_amplicon>GCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGAMGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33292</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>63611</contig_pos>
        <strand>+</strand>
        <context>TCAGGAAAAC[G/T]TTTTTTTTKG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAAC</left_flank>
        <right_flank>TTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGATTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAA</canonical>
            <polymorphic>TAGGATTCGAAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACKTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTGCTTGTCAAGAGTTCA</pcr_primer_p1>
		<pcr_primer_p2>ATAGGACAACAGAAAACAGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTAT</canonical_amplicon>
		<polymorphic_amplicon>AGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACKTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33293</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>63620</contig_pos>
        <strand></strand>
        <context>CKTTTTTTTT[G/T]GGTGTCTGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTT</left_flank>
        <right_flank>GGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGA</canonical>
            <polymorphic>AAATGGTTTTCAATGCTATTTGAACAGTATTAAAAGATTTATTTTAAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTKGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACTCCTCATAAGGGTTCTC</pcr_primer_p1>
		<pcr_primer_p2>TGATCAATTTGGAGAAGGATAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCA</canonical_amplicon>
		<polymorphic_amplicon>CAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTKGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33294</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>63665</contig_pos>
        <strand>+</strand>
        <context>AAAAATCCCA[A/C]AATTTACTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCA</left_flank>
        <right_flank>AATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAA</right_flank>
        <qual_score>36</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGATTTTGATCCTTTGAACTTTACATCT</canonical>
            <polymorphic>AAATGATTTACTGTTTCAAAACTTAAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAMAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGATTTTGATCCTTTGAACTTTACATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>245 234 83 68 63 60 55 41 33 29 23 19 13 11 8 8 7</canonical_bands>
                <polymorphic_bands>275 245 83 68 63 60 55 33 29 23 19 13 11 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATAAGGGTTCTCTAGACAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTAGTTTGATCAATTTGGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAG</canonical_amplicon>
		<polymorphic_amplicon>TCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAMAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33295</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>63689</contig_pos>
        <strand>+</strand>
        <context>AAACTAATAT[C/G]TTTCTCTTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATAT</left_flank>
        <right_flank>TTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGA</canonical>
            <polymorphic>AAACGAAAATTAATACTTGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATSTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATAAGGGTTCTCTAGACAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTAGTTTGATCAATTTGGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAG</canonical_amplicon>
		<polymorphic_amplicon>TCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATSTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33296</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>63706</contig_pos>
        <strand>+</strand>
        <context>TTTAAAAATC[C/G]AATTTGTAWT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATC</left_flank>
        <right_flank>AATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGACTCCATCAAAAACCCCA</canonical>
            <polymorphic>TGACTTTTGAATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCSAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGACTCCATCAAAAACCCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>245 234 74 68 63 60 55 42 41 29 23 19 13 11 8 8 7</canonical_bands>
                <polymorphic_bands>245 234 104 74 68 60 55 42 29 23 19 13 11 8 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 180 169 108 44</canonical_bands>
                <polymorphic_bands>668 180 108 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATAAGGGTTCTCTAGACAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTAGTTTGATCAATTTGGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAG</canonical_amplicon>
		<polymorphic_amplicon>TCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCSAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33297</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>63715</contig_pos>
        <strand>+</strand>
        <context>CSAATTTGTA[A/T]TWCTSCTCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTA</left_flank>
        <right_flank>TACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGACTCCATCAAAAACCCCATTAAAAATC</canonical>
            <polymorphic>AATATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAWTACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGACTCCATCAAAAACCCCATTAAAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATAAGGGTTCTCTAGACAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTAGTTTGATCAATTTGGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAG</canonical_amplicon>
		<polymorphic_amplicon>TCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAWTACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33298</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>63717</contig_pos>
        <strand>+</strand>
        <context>AATTTGTAWT[A/T]CTSCTCCAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAAT</left_flank>
        <right_flank>CTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGACTCCATCAAAAACCCCATTAAAAATCCC</canonical>
            <polymorphic>TATAATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATWCTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGACTCCATCAAAAACCCCATTAAAAATCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATAAGGGTTCTCTAGACAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTAGTTTGATCAATTTGGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAG</canonical_amplicon>
		<polymorphic_amplicon>TCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATWCTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33299</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>63720</contig_pos>
        <strand>+</strand>
        <context>TTGTAWTWCT[C/G]CTCCAACTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACT</left_flank>
        <right_flank>CTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGACTCCATCAAAAACCCCATTAAAAATCCCCAT</canonical>
            <polymorphic>AATGTTGAAAAATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTSCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGACTCCATCAAAAACCCCATTAAAAATCCCCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATAAGGGTTCTCTAGACAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTAGTTTGATCAATTTGGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAG</canonical_amplicon>
		<polymorphic_amplicon>TCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTSCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33300</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>63731</contig_pos>
        <strand>+</strand>
        <context>CTCCAACTCA[G/T]ATATTTCTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCA</left_flank>
        <right_flank>ATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGACTCCATCAAAAACCCCATTAAAAATCCCCATTAAAAATTCGA</canonical>
            <polymorphic>ATGTGTCGCTGACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAKATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGACTCCATCAAAAACCCCATTAAAAATCCCCATTAAAAATTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 206 179 86 25</canonical_bands>
                <polymorphic_bands>683 206 86 25</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>499 284 217</canonical_bands>
                <polymorphic_bands>783 217</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATAAGGGTTCTCTAGACAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTAGTTTGATCAATTTGGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAG</canonical_amplicon>
		<polymorphic_amplicon>TCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAKATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33301</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>63742</contig_pos>
        <strand>+</strand>
        <context>ATATTTCTAA[A/G]TATTTSACCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAA</left_flank>
        <right_flank>TATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGACTCCATCAAAAACCCCATTAAAAATCCCCATTAAAAATTCGAGTGTAAATTTC</canonical>
            <polymorphic>ACCTAAAATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAARTATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGACTCCATCAAAAACCCCATTAAAAATCCCCATTAAAAATTCGAGTGTAAATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 360 139</canonical_bands>
                <polymorphic_bands>861 139</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATAAGGGTTCTCTAGACAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTAGTTTGATCAATTTGGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAG</canonical_amplicon>
		<polymorphic_amplicon>TCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAARTATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33302</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>63748</contig_pos>
        <strand>+</strand>
        <context>CTAARTATTT[C/G]ACCCCTATCA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTT</left_flank>
        <right_flank>ACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGACTCCATCAAAAACCCCATTAAAAATCCCCATTAAAAATTCGAGTGTAAATTTCGGCAAG</canonical>
            <polymorphic>AATTCAAAATTCCCAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTSACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGACTCCATCAAAAACCCCATTAAAAATCCCCATTAAAAATTCGAGTGTAAATTTCGGCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATAAGGGTTCTCTAGACAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTAGTTTGATCAATTTGGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAG</canonical_amplicon>
		<polymorphic_amplicon>TCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTSACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33303</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>63761</contig_pos>
        <strand>+</strand>
        <context>CCCTATCAAA[C/T]CTTCTSCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAA</left_flank>
        <right_flank>CTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTG</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGACTCCATCAAAAACCCCATTAAAAATCCCCATTAAAAATTCGAGTGTAAATTTCGGCAAGAAACTTTTTCCCA</canonical>
            <polymorphic>CAAAAAATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAAYCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGACTCCATCAAAAACCCCATTAAAAATCCCCATTAAAAATTCGAGTGTAAATTTCGGCAAGAAACTTTTTCCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATAAGGGTTCTCTAGACAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTAGTTTGATCAATTTGGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAG</canonical_amplicon>
		<polymorphic_amplicon>TCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAAYCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33304</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>63767</contig_pos>
        <strand>+</strand>
        <context>CAAAYCTTCT[C/G]CAAATTTCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCT</left_flank>
        <right_flank>CAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGACTCCATCAAAAACCCCATTAAAAATCCCCATTAAAAATTCGAGTGTAAATTTCGGCAAGAAACTTTTTCCCAACCAAA</canonical>
            <polymorphic>ATTGCTATTTCAATTCAAATTCTGTTGCCAAAAGGGGACTTTGAGCATGCTAAGGATTTAAAATCTGTCTTTTTATAAATTTTATGAAAGTGCTTCAAACTTCCTGCGTTTTGATACAAAAATACCTCAAAAATTAGCTTTTAGGAATTTTAAAATTTCTTCAAAATTTTCTTAAAGGAGGCGAGACAGCAAAAACTTTGGGGACAGTTTGGGGGACGAAATCGCACCGCGCTTATGTAGGCCATCGGTCGGTATCTCAGCTGGTAGTTGCGCTGTACCCCTGAGCTGCTTGTCAAGAGTTCAACTCCTCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTSCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGACTCCATCAAAAACCCCATTAAAAATCCCCATTAAAAATTCGAGTGTAAATTTCGGCAAGAAACTTTTTCCCAACCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 312 188</canonical_bands>
                <polymorphic_bands>688 312</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATAAGGGTTCTCTAGACAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTAGTTTGATCAATTTGGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAG</canonical_amplicon>
		<polymorphic_amplicon>TCATAAGGGTTCTCTAGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTSCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33305</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>64090</contig_pos>
        <strand>+</strand>
        <context>GGAAGCTTTA[A/G]AAGGGGTCGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTA</left_flank>
        <right_flank>AAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGACTCCATCAAAAACCCCATTAAAAATCCCCATTAAAAATTCGAGTGTAAATTTCGGCAAGAAACTTTTTCCCAACCAAACCACACAATTGTTTCTAGTTTTTCTAGTCTATTTTAATTAGATAATCTGATTAATGACCACCTGATTAGTAGTCAATCAAAGAACCAATGGGTTCAAAATGTGATGGATTACTGTAGATTGCAAAGAATGATCAGATAATTTTGCTGGCAGGGTACTGTAGGTAAAGTTTTGTCAGTAACATGGATATAGCAATCTTCAAAATCCAGGAAATGCTTAATGAGAATTTTGAAACAGTAATTTTTGGAATTCCTATCACTTTTTAAGTTTTCAACCGATTTTTGAGATTTTCGTATCAAAATGAAGACGAACTCAAGCGCTATGA</canonical>
            <polymorphic>AGACAAAATATCAGGAAAACTTTTTTTTTGGGTGTCTGGTCTCCTTTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTARAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGACTCCATCAAAAACCCCATTAAAAATCCCCATTAAAAATTCGAGTGTAAATTTCGGCAAGAAACTTTTTCCCAACCAAACCACACAATTGTTTCTAGTTTTTCTAGTCTATTTTAATTAGATAATCTGATTAATGACCACCTGATTAGTAGTCAATCAAAGAACCAATGGGTTCAAAATGTGATGGATTACTGTAGATTGCAAAGAATGATCAGATAATTTTGCTGGCAGGGTACTGTAGGTAAAGTTTTGTCAGTAACATGGATATAGCAATCTTCAAAATCCAGGAAATGCTTAATGAGAATTTTGAAACAGTAATTTTTGGAATTCCTATCACTTTTTAAGTTTTCAACCGATTTTTGAGATTTTCGTATCAAAATGAAGACGAACTCAAGCGCTATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATCACATGTTTTTCTTCTTCT</pcr_primer_p1>
		<pcr_primer_p2>GATGTAAAGTTCAAAGGATCAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGATTTTGATCCTTTGAACTTTACATC</canonical_amplicon>
		<polymorphic_amplicon>CAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTARAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGATTTTGATCCTTTGAACTTTACATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33306</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>64135</contig_pos>
        <strand>+</strand>
        <context>AATTTTAAAA[A/T]TTTGATTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAA</left_flank>
        <right_flank>TTTGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGACTCCATCAAAAACCCCATTAAAAATCCCCATTAAAAATTCGAGTGTAAATTTCGGCAAGAAACTTTTTCCCAACCAAACCACACAATTGTTTCTAGTTTTTCTAGTCTATTTTAATTAGATAATCTGATTAATGACCACCTGATTAGTAGTCAATCAAAGAACCAATGGGTTCAAAATGTGATGGATTACTGTAGATTGCAAAGAATGATCAGATAATTTTGCTGGCAGGGTACTGTAGGTAAAGTTTTGTCAGTAACATGGATATAGCAATCTTCAAAATCCAGGAAATGCTTAATGAGAATTTTGAAACAGTAATTTTTGGAATTCCTATCACTTTTTAAGTTTTCAACCGATTTTTGAGATTTTCGTATCAAAATGAAGACGAACTCAAGCGCTATGATAATGCCAAACTAATATTTTGAAATTTCTACAAGGAAACTTTGAA</canonical>
            <polymorphic>TTAAAACTTCAAAAATTATAAAAATCCCAAAATTTACTGTTTCAAACTAATATGTTTCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAAWTTTGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGACTCCATCAAAAACCCCATTAAAAATCCCCATTAAAAATTCGAGTGTAAATTTCGGCAAGAAACTTTTTCCCAACCAAACCACACAATTGTTTCTAGTTTTTCTAGTCTATTTTAATTAGATAATCTGATTAATGACCACCTGATTAGTAGTCAATCAAAGAACCAATGGGTTCAAAATGTGATGGATTACTGTAGATTGCAAAGAATGATCAGATAATTTTGCTGGCAGGGTACTGTAGGTAAAGTTTTGTCAGTAACATGGATATAGCAATCTTCAAAATCCAGGAAATGCTTAATGAGAATTTTGAAACAGTAATTTTTGGAATTCCTATCACTTTTTAAGTTTTCAACCGATTTTTGAGATTTTCGTATCAAAATGAAGACGAACTCAAGCGCTATGATAATGCCAAACTAATATTTTGAAATTTCTACAAGGAAACTTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>253 245 100 92 63 55 41 30 23 23 23 19 13 12 8</canonical_bands>
                <polymorphic_bands>253 245 100 100 63 55 41 30 23 23 23 19 13 12</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>159 102 100 92 85 68 63 41 37 37 29 23 23 19 18 18 17 14 13 13 12 9 8</canonical_bands>
                <polymorphic_bands>159 102 100 100 85 68 63 41 37 37 29 23 23 19 18 18 17 14 13 13 12 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAATACACTGTTGTGATTCTCT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTAATGGGGATTTTTAATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGACTCCATCAAAAACCCCATTAAAAATCCCCATTAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>GGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAAWTTTGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGACTCCATCAAAAACCCCATTAAAAATCCCCATTAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33307</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>64191</contig_pos>
        <strand>+</strand>
        <context>TCTTTATGAC[C/T]CCATCAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGAC</left_flank>
        <right_flank>CCATCAAAAACCCCATTAAAAATCCCCATTAAAAATTCGAGTGTAAATTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGACTCCATCAAAAACCCCATTAAAAATCCCCATTAAAAATTCGAGTGTAAATTTCGGCAAGAAACTTTTTCCCAACCAAACCACACAATTGTTTCTAGTTTTTCTAGTCTATTTTAATTAGATAATCTGATTAATGACCACCTGATTAGTAGTCAATCAAAGAACCAATGGGTTCAAAATGTGATGGATTACTGTAGATTGCAAAGAATGATCAGATAATTTTGCTGGCAGGGTACTGTAGGTAAAGTTTTGTCAGTAACATGGATATAGCAATCTTCAAAATCCAGGAAATGCTTAATGAGAATTTTGAAACAGTAATTTTTGGAATTCCTATCACTTTTTAAGTTTTCAACCGATTTTTGAGATTTTCGTATCAAAATGAAGACGAACTCAAGCGCTATGATAATGCCAAACTAATATTTTGAAATTTCTACAAGGAAACTTTGAAACAGTAATTTTTTGACTTATTTGGTGAGAAATCAATTTTTGCTTTTTCAAAAAAAA</canonical>
            <polymorphic>TCTCTTTAAAAATCGAATTTGTAATACTGCTCCAACTCAGATATTTCTAAATATTTGACCCCTATCAAATCTTCTGCAAATTTCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGACYCCATCAAAAACCCCATTAAAAATCCCCATTAAAAATTCGAGTGTAAATTTCGGCAAGAAACTTTTTCCCAACCAAACCACACAATTGTTTCTAGTTTTTCTAGTCTATTTTAATTAGATAATCTGATTAATGACCACCTGATTAGTAGTCAATCAAAGAACCAATGGGTTCAAAATGTGATGGATTACTGTAGATTGCAAAGAATGATCAGATAATTTTGCTGGCAGGGTACTGTAGGTAAAGTTTTGTCAGTAACATGGATATAGCAATCTTCAAAATCCAGGAAATGCTTAATGAGAATTTTGAAACAGTAATTTTTGGAATTCCTATCACTTTTTAAGTTTTCAACCGATTTTTGAGATTTTCGTATCAAAATGAAGACGAACTCAAGCGCTATGATAATGCCAAACTAATATTTTGAAATTTCTACAAGGAAACTTTGAAACAGTAATTTTTTGACTTATTTGGTGAGAAATCAATTTTTGCTTTTTCAAAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>503 304 173 20</canonical_bands>
                <polymorphic_bands>676 304 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATTTTGATCCTTTGAACTTTA</pcr_primer_p1>
		<pcr_primer_p2>CAATCTACAGTAATCCATCACATT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGACTCCATCAAAAACCCCATTAAAAATCCCCATTAAAAATTCGAGTGTAAATTTCGGCAAGAAACTTTTTCCCAACCAAACCACACAATTGTTTCTAGTTTTTCTAGTCTATTTTAATTAGATAATCTGATTAATGACCACCTGATTAGTAGTCAATCAAAGAACCAATGGGTTCAAAATGTGATGGATTACTGTAGATTG</canonical_amplicon>
		<polymorphic_amplicon>TGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGACYCCATCAAAAACCCCATTAAAAATCCCCATTAAAAATTCGAGTGTAAATTTCGGCAAGAAACTTTTTCCCAACCAAACCACACAATTGTTTCTAGTTTTTCTAGTCTATTTTAATTAGATAATCTGATTAATGACCACCTGATTAGTAGTCAATCAAAGAACCAATGGGTTCAAAATGTGATGGATTACTGTAGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33308</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>64273</contig_pos>
        <strand>+</strand>
        <context>CCAAACCACA[C/G]AATTGTTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAATTCGAGTGTAAATTTCGGCAAGAAACTTTTTCCCAACCAAACCACA</left_flank>
        <right_flank>AATTGTTTCTAGTTTTTCTAGTCTATTTTAATTAGATAATCTGATTAATG</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGACTCCATCAAAAACCCCATTAAAAATCCCCATTAAAAATTCGAGTGTAAATTTCGGCAAGAAACTTTTTCCCAACCAAACCACACAATTGTTTCTAGTTTTTCTAGTCTATTTTAATTAGATAATCTGATTAATGACCACCTGATTAGTAGTCAATCAAAGAACCAATGGGTTCAAAATGTGATGGATTACTGTAGATTGCAAAGAATGATCAGATAATTTTGCTGGCAGGGTACTGTAGGTAAAGTTTTGTCAGTAACATGGATATAGCAATCTTCAAAATCCAGGAAATGCTTAATGAGAATTTTGAAACAGTAATTTTTGGAATTCCTATCACTTTTTAAGTTTTCAACCGATTTTTGAGATTTTCGTATCAAAATGAAGACGAACTCAAGCGCTATGATAATGCCAAACTAATATTTTGAAATTTCTACAAGGAAACTTTGAAACAGTAATTTTTTGACTTATTTGGTGAGAAATCAATTTTTGCTTTTTCAAAAAAAATGGAAAACTTTGATTTCGAAAATTCGAACAAACAATTTATTTGAATTGCATCAGTCGAGTCACAATTGATCATGCGCAACAT</canonical>
            <polymorphic>TCTCACTGTTTTCTGTTGTCCTATCCTTCTCCAAATTGATCAAACTAGGTAAATTTGGAAGTACGTGCCAAATTTTCCCTCCATCTTTCCCTAAATTCGTCGATTTTTGTACATACAGAGAAAAAGGAAAATCATGTGGCCAATCACATGTTTTTCTTCTTCTTCCACCCAATATCTTTTTGCAGTATCTCAACCCCAAAAAAACCGGAATACACTGTTGTGATTCTCTCTCTCTACGTCAGAATCTTTTCTAATTTGTTGTGTCATATCAATTGTTTTTCGAAAATAAGCAGCGGAAATGATAAAGGAAGCTTTAGAAGGGGTCGAAATATTTTGAAAATTTGGGATCAAAATTTTAAAATTTTGATTTTGATCCTTTGAACTTTACATCTTGCTCGCGGAGCATCTCTTTATGACTCCATCAAAAACCCCATTAAAAATCCCCATTAAAAATTCGAGTGTAAATTTCGGCAAGAAACTTTTTCCCAACCAAACCACASAATTGTTTCTAGTTTTTCTAGTCTATTTTAATTAGATAATCTGATTAATGACCACCTGATTAGTAGTCAATCAAAGAACCAATGGGTTCAAAATGTGATGGATTACTGTAGATTGCAAAGAATGATCAGATAATTTTGCTGGCAGGGTACTGTAGGTAAAGTTTTGTCAGTAACATGGATATAGCAATCTTCAAAATCCAGGAAATGCTTAATGAGAATTTTGAAACAGTAATTTTTGGAATTCCTATCACTTTTTAAGTTTTCAACCGATTTTTGAGATTTTCGTATCAAAATGAAGACGAACTCAAGCGCTATGATAATGCCAAACTAATATTTTGAAATTTCTACAAGGAAACTTTGAAACAGTAATTTTTTGACTTATTTGGTGAGAAATCAATTTTTGCTTTTTCAAAAAAAATGGAAAACTTTGATTTCGAAAATTCGAACAAACAATTTATTTGAATTGCATCAGTCGAGTCACAATTGATCATGCGCAACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>198 153 138 92 71 62 55 47 43 41 36 21 20 8 8 5 2</canonical_bands>
                <polymorphic_bands>198 153 138 92 71 62 57 47 43 41 36 21 20 8 8 5</polymorphic_bands>
            </assay>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>481 270 230 19</canonical_bands>
                <polymorphic_bands>711 270 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTAAAAATCCCCATTAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCCATGTTACTGACAAAACTTTAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CATTAAAAATCCCCATTAAAAATTCGAGTGTAAATTTCGGCAAGAAACTTTTTCCCAACCAAACCACACAATTGTTTCTAGTTTTTCTAGTCTATTTTAATTAGATAATCTGATTAATGACCACCTGATTAGTAGTCAATCAAAGAACCAATGGGTTCAAAATGTGATGGATTACTGTAGATTGCAAAGAATGATCAGATAATTTTGCTGGCAGGGTACTGTAGGTAAAGTTTTGTCAGTAACATGGA</canonical_amplicon>
		<polymorphic_amplicon>CATTAAAAATCCCCATTAAAAATTCGAGTGTAAATTTCGGCAAGAAACTTTTTCCCAACCAAACCACASAATTGTTTCTAGTTTTTCTAGTCTATTTTAATTAGATAATCTGATTAATGACCACCTGATTAGTAGTCAATCAAAGAACCAATGGGTTCAAAATGTGATGGATTACTGTAGATTGCAAAGAATGATCAGATAATTTTGCTGGCAGGGTACTGTAGGTAAAGTTTTGTCAGTAACATGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33309</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>82021</contig_pos>
        <strand></strand>
        <context>GAAAAATCGG[T/C]CTAAAAATAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAGATCATCCAAAAAGCCATGAAAATTGCCAAAAATCGAGAAAAATCGG</left_flank>
        <right_flank>CTAAAAATATTTATTCTCGAAAAATCTAGAAGTTTTAAAGGCGCATGGAC</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCAGAAATATCGCAAAAAAAGCGAGAAATTTGAGCTGAAAATCAGATTTTTTATAATTTTTGTTTTTTTTTTTTTTTTTAATCTTTCTGAAAGTTTTGAATTTTAAGACTTGAAATTGACAATTTCAGCTGTTTTTTTGTGCTTTTTTTTCTAAAAATTCTGACTGAAATTTTCCGAATTTTTGAATTTTTTAAGATTGTATTTTTCTGAAAATTTGAGTTTTCAGTTTAAAGATTTTTGAATTTCGGCCGAAATTTCATTTAATGGCGCATCGTCCTTCTATATTTCATCCACCTCTAAAGTTTCTAGATTTTTCGAAAATTGTTATTTTTAGCCTATTTTTCTCAAAAATTTCGGCAGTTTTTCATAGCTTTTTGGGTCATTCTCATCGTTTTTATTTGATTTTTTTCCGGTAAAAAATAGCAAAAAACTGACAAAAAAATCGATAAAGATCATCCAAAAAGCCATGAAAATTGCCAAAAATCGAGAAAAATCGGTCTAAAAATATTTATTCTCGAAAAATCTAGAAGTTTTAAAGGCGCATGGACTTTAACGGCTGCTCCGACAATGCGCAAATTTAAACAAAAAATTTCCGACAATTTTGAAATTCCGAAATTTCTGAAAATAGGAGAATCAGATGCGCCTTTAAATTTGTTTAAATTTTTTTTCTCGAATTTCGCTGTTTCTGAAGCGTGCAACAAAAATAAAAGAGCCGGGAAATTTGAAATCCGTGAAAGCTGAGCAATCGGTGGCAGCTAAATTCATCCGGATATTAAAATTGAGTCGGTGAATATAACGGATATTGGATTCGTTTCCTCCCAGTAGCGCCTCAGCAGTTCAATTTGAAAAAACTACGGTAATTTATAGAGCCGCTACAGTATGCCGTATTTAGTCTAATAAAAGCACACTCAACTTGTTCGCTGAAAATCGCTGAAAATTTAAAATTCCGATTGTTGCAGACGATGCATTTGAATTGACGAGCAAGTTTTAGCAATGCT</canonical>
            <polymorphic>CAGCAGAAATATCGCAAAAAAAGCGAGAAATTTGAGCTGAAAATCAGATTTTTTATAATTTTTGTTTTTTTTTTTTTTTTTAATCTTTCTGAAAGTTTTGAATTTTAAGACTTGAAATTGACAATTTCAGCTGTTTTTTTGTGCTTTTTTTTCTAAAAATTCTGACTGAAATTTTCCGAATTTTTGAATTTTTTAAGATTGTATTTTTCTGAAAATTTGAGTTTTCAGTTTAAAGATTTTTGAATTTCGGCCGAAATTTCATTTAATGGCGCATCGTCCTTCTATATTTCATCCACCTCTAAAGTTTCTAGATTTTTCGAAAATTGTTATTTTTAGCCTATTTTTCTCAAAAATTTCGGCAGTTTTTCATAGCTTTTTGGGTCATTCTCATCGTTTTTATTTGATTTTTTTCCGGTAAAAAATAGCAAAAAACTGACAAAAAAATCGATAAAGATCATCCAAAAAGCCATGAAAATTGCCAAAAATCGAGAAAAATCGGYCTAAAAATATTTATTCTCGAAAAATCTAGAAGTTTTAAAGGCGCATGGACTTTAACGGCTGCTCCGACAATGCGCAAATTTAAACAAAAAATTTCCGACAATTTTGAAATTCCGAAATTTCTGAAAATAGGAGAATCAGATGCGCCTTTAAATTTGTTTAAATTTTTTTTCTCGAATTTCGCTGTTTCTGAAGCGTGCAACAAAAATAAAAGAGCCGGGAAATTTGAAATCCGTGAAAGCTGAGCAATCGGTGGCAGCTAAATTCATCCGGATATTAAAATTGAGTCGGTGAATATAACGGATATTGGATTCGTTTCCTCCCAGTAGCGCCTCAGCAGTTCAATTTGAAAAAACTACGGTAATTTATAGAGCCGCTACAGTATGCCGTATTTAGTCTAATAAAAGCACACTCAACTTGTTCGCTGAAAATCGCTGAAAATTTAAAATTCCGATTGTTGCAGACGATGCATTTGAATTGACGAGCAAGTTTTAGCAATGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCATCGTTTTTATTTGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CATCTGATTCTCCTATTTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CTCATCGTTTTTATTTGATTTTTTTCCGGTAAAAAATAGCAAAAAACTGACAAAAAAATCGATAAAGATCATCCAAAAAGCCATGAAAATTGCCAAAAATCGAGAAAAATCGGTCTAAAAATATTTATTCTCGAAAAATCTAGAAGTTTTAAAGGCGCATGGACTTTAACGGCTGCTCCGACAATGCGCAAATTTAAACAAAAAATTTCCGACAATTTTGAAATTCCGAAATTTCTGAAAATAGGAGAATCAGATG</canonical_amplicon>
		<polymorphic_amplicon>CTCATCGTTTTTATTTGATTTTTTTCCGGTAAAAAATAGCAAAAAACTGACAAAAAAATCGATAAAGATCATCCAAAAAGCCATGAAAATTGCCAAAAATCGAGAAAAATCGGYCTAAAAATATTTATTCTCGAAAAATCTAGAAGTTTTAAAGGCGCATGGACTTTAACGGCTGCTCCGACAATGCGCAAATTTAAACAAAAAATTTCCGACAATTTTGAAATTCCGAAATTTCTGAAAATAGGAGAATCAGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33310</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>136563</contig_pos>
        <strand>+</strand>
        <context>AAGCTCTGAT[A/T]TTTCAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATTTTGAAATTCCGCAAAAAATAATGTTAAAACCCAAAAGCTCTGAT</left_flank>
        <right_flank>TTTCAAAAAAGTCTAGTTTTTTTGACTTCGGATCAATTTTTCGCTGAAAC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATTTCCAAATCTAATGGATGTAAAATTAACACACTGAATATAAATTTTTAAAAAATCGGATTATTTCTAAAATCTTCTGCTTCTGAGATTCCGAATTTTCTATTCATTCAACTTTTGACAACAACTAGCTATTCCAATACTATTTTTGATAAATAAAATCTCTTAAAAATATTTTCTGAAACAGATAAAAATTTCCAAAACTCCTGAGTTTTGATCCTCCTCGTATTAATTCTCCACAAAGATTTCTGATTCAGAAGACATCCCAAATGTGTTTCTTTGCTCTTCAGAATTTGAAAAAAAAGAAGACGTCATGAGAAAAGGAAGATGAAAAGTCAAAGATTATCATTTTCTGATTCTTATCAGTTCACATGTAGTTTTTTCTTTTTCTTCGAGAACTTTTGAGTAGGCGTCCCCATTTTTATATTTTGAAATTTTTTTAAAACTTTAAAATTTTGAAATTCCGCAAAAAATAATGTTAAAACCCAAAAGCTCTGATATTTCAAAAAAGTCTAGTTTTTTTGACTTCGGATCAATTTTTCGCTGAAACTTATATTTTCCAATAGTTTTTTGAAACAGAAATTTCATTACTCTTATGTATATTGGGTCAAAACCTGAGCAATCATTTTTCACTCCAAATTTAAAAAACCTTTTTTTGAAACAGTAAGTTTTTCCTTTAAAAAAGTAGATACCTAGCGATGTCTGATTCGTTCAAAAAAAGTTCATCATCCTTTTCATTTTTTTAATTAATTAGACTGAAAAAACTAGATTTTCTAGACATATTCTCTTCTTTTCTAGAAAAATCTTTTTTCTAAAACCAGGAAACGTCACAAAACGTTCGGGTTGTCTGACAGGAAATTTAGGCTCCGCCCGTTTTTTCAAGTTATGACTCAGGTTTTTATTCTTTATAAGTGAAATCTCAGTATTTTAAAGGATCTTTTTTTCAGGTATAAGAATAACTGTTTCAAAATTTTGGTTTGAAAAATTTCAGACTTAAATC</canonical>
            <polymorphic>TTTATTTCCAAATCTAATGGATGTAAAATTAACACACTGAATATAAATTTTTAAAAAATCGGATTATTTCTAAAATCTTCTGCTTCTGAGATTCCGAATTTTCTATTCATTCAACTTTTGACAACAACTAGCTATTCCAATACTATTTTTGATAAATAAAATCTCTTAAAAATATTTTCTGAAACAGATAAAAATTTCCAAAACTCCTGAGTTTTGATCCTCCTCGTATTAATTCTCCACAAAGATTTCTGATTCAGAAGACATCCCAAATGTGTTTCTTTGCTCTTCAGAATTTGAAAAAAAAGAAGACGTCATGAGAAAAGGAAGATGAAAAGTCAAAGATTATCATTTTCTGATTCTTATCAGTTCACATGTAGTTTTTTCTTTTTCTTCGAGAACTTTTGAGTAGGCGTCCCCATTTTTATATTTTGAAATTTTTTTAAAACTTTAAAATTTTGAAATTCCGCAAAAAATAATGTTAAAACCCAAAAGCTCTGATWTTTCAAAAAAGTCTAGTTTTTTTGACTTCGGATCAATTTTTCGCTGAAACTTATATTTTCCAATAGTTTTTTGAAACAGAAATTTCATTACTCTTATGTATATTGGGTCAAAACCTGAGCAATCATTTTTCACTCCAAATTTAAAAAACCTTTTTTTGAAACAGTAAGTTTTTCCTTTAAAAAAGTAGATACCTAGCGATGTCTGATTCGTTCAAAAAAAGTTCATCATCCTTTTCATTTTTTTAATTAATTAGACTGAAAAAACTAGATTTTCTAGACATATTCTCTTCTTTTCTAGAAAAATCTTTTTTCTAAAACCAGGAAACGTCACAAAACGTTCGGGTTGTCTGACAGGAAATTTAGGCTCCGCCCGTTTTTTCAAGTTATGACTCAGGTTTTTATTCTTTATAAGTGAAATCTCAGTATTTTAAAGGATCTTTTTTTCAGGTATAAGAATAACTGTTTCAAAATTTTGGTTTGAAAAATTTCAGACTTAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAGAAAAGGAAGATGAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>AAAATATAAGTTTCAGCGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATGAGAAAAGGAAGATGAAAAGTCAAAGATTATCATTTTCTGATTCTTATCAGTTCACATGTAGTTTTTTCTTTTTCTTCGAGAACTTTTGAGTAGGCGTCCCCATTTTTATATTTTGAAATTTTTTTAAAACTTTAAAATTTTGAAATTCCGCAAAAAATAATGTTAAAACCCAAAAGCTCTGATATTTCAAAAAAGTCTAGTTTTTTTGACTTCGGATCAATTTTTCGCTGAAACTTATATTTT</canonical_amplicon>
		<polymorphic_amplicon>ATGAGAAAAGGAAGATGAAAAGTCAAAGATTATCATTTTCTGATTCTTATCAGTTCACATGTAGTTTTTTCTTTTTCTTCGAGAACTTTTGAGTAGGCGTCCCCATTTTTATATTTTGAAATTTTTTTAAAACTTTAAAATTTTGAAATTCCGCAAAAAATAATGTTAAAACCCAAAAGCTCTGATWTTTCAAAAAAGTCTAGTTTTTTTGACTTCGGATCAATTTTTCGCTGAAACTTATATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33311</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>136635</contig_pos>
        <strand>+</strand>
        <context>AATAGTTTTT[C/T]GAAACAGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGACTTCGGATCAATTTTTCGCTGAAACTTATATTTTCCAATAGTTTTT</left_flank>
        <right_flank>GAAACAGAAATTTCATTACTCTTATGTATATTGGGTCAAAACCTGAGCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCTTCTGCTTCTGAGATTCCGAATTTTCTATTCATTCAACTTTTGACAACAACTAGCTATTCCAATACTATTTTTGATAAATAAAATCTCTTAAAAATATTTTCTGAAACAGATAAAAATTTCCAAAACTCCTGAGTTTTGATCCTCCTCGTATTAATTCTCCACAAAGATTTCTGATTCAGAAGACATCCCAAATGTGTTTCTTTGCTCTTCAGAATTTGAAAAAAAAGAAGACGTCATGAGAAAAGGAAGATGAAAAGTCAAAGATTATCATTTTCTGATTCTTATCAGTTCACATGTAGTTTTTTCTTTTTCTTCGAGAACTTTTGAGTAGGCGTCCCCATTTTTATATTTTGAAATTTTTTTAAAACTTTAAAATTTTGAAATTCCGCAAAAAATAATGTTAAAACCCAAAAGCTCTGATATTTCAAAAAAGTCTAGTTTTTTTGACTTCGGATCAATTTTTCGCTGAAACTTATATTTTCCAATAGTTTTTTGAAACAGAAATTTCATTACTCTTATGTATATTGGGTCAAAACCTGAGCAATCATTTTTCACTCCAAATTTAAAAAACCTTTTTTTGAAACAGTAAGTTTTTCCTTTAAAAAAGTAGATACCTAGCGATGTCTGATTCGTTCAAAAAAAGTTCATCATCCTTTTCATTTTTTTAATTAATTAGACTGAAAAAACTAGATTTTCTAGACATATTCTCTTCTTTTCTAGAAAAATCTTTTTTCTAAAACCAGGAAACGTCACAAAACGTTCGGGTTGTCTGACAGGAAATTTAGGCTCCGCCCGTTTTTTCAAGTTATGACTCAGGTTTTTATTCTTTATAAGTGAAATCTCAGTATTTTAAAGGATCTTTTTTTCAGGTATAAGAATAACTGTTTCAAAATTTTGGTTTGAAAAATTTCAGACTTAAATCATGATTGCGAATTGCTAAATTTTTTACTGTTTCGAAAAAATAATCTGAAATGTTTGTTTCAATGAAAAATTA</canonical>
            <polymorphic>AAATCTTCTGCTTCTGAGATTCCGAATTTTCTATTCATTCAACTTTTGACAACAACTAGCTATTCCAATACTATTTTTGATAAATAAAATCTCTTAAAAATATTTTCTGAAACAGATAAAAATTTCCAAAACTCCTGAGTTTTGATCCTCCTCGTATTAATTCTCCACAAAGATTTCTGATTCAGAAGACATCCCAAATGTGTTTCTTTGCTCTTCAGAATTTGAAAAAAAAGAAGACGTCATGAGAAAAGGAAGATGAAAAGTCAAAGATTATCATTTTCTGATTCTTATCAGTTCACATGTAGTTTTTTCTTTTTCTTCGAGAACTTTTGAGTAGGCGTCCCCATTTTTATATTTTGAAATTTTTTTAAAACTTTAAAATTTTGAAATTCCGCAAAAAATAATGTTAAAACCCAAAAGCTCTGATATTTCAAAAAAGTCTAGTTTTTTTGACTTCGGATCAATTTTTCGCTGAAACTTATATTTTCCAATAGTTTTTYGAAACAGAAATTTCATTACTCTTATGTATATTGGGTCAAAACCTGAGCAATCATTTTTCACTCCAAATTTAAAAAACCTTTTTTTGAAACAGTAAGTTTTTCCTTTAAAAAAGTAGATACCTAGCGATGTCTGATTCGTTCAAAAAAAGTTCATCATCCTTTTCATTTTTTTAATTAATTAGACTGAAAAAACTAGATTTTCTAGACATATTCTCTTCTTTTCTAGAAAAATCTTTTTTCTAAAACCAGGAAACGTCACAAAACGTTCGGGTTGTCTGACAGGAAATTTAGGCTCCGCCCGTTTTTTCAAGTTATGACTCAGGTTTTTATTCTTTATAAGTGAAATCTCAGTATTTTAAAGGATCTTTTTTTCAGGTATAAGAATAACTGTTTCAAAATTTTGGTTTGAAAAATTTCAGACTTAAATCATGATTGCGAATTGCTAAATTTTTTACTGTTTCGAAAAAATAATCTGAAATGTTTGTTTCAATGAAAAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATAATGTTAAAACCCAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAACGAATCAGACATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAATAATGTTAAAACCCAAAAGCTCTGATATTTCAAAAAAGTCTAGTTTTTTTGACTTCGGATCAATTTTTCGCTGAAACTTATATTTTCCAATAGTTTTTTGAAACAGAAATTTCATTACTCTTATGTATATTGGGTCAAAACCTGAGCAATCATTTTTCACTCCAAATTTAAAAAACCTTTTTTTGAAACAGTAAGTTTTTCCTTTAAAAAAGTAGATACCTAGCGATGTCTGATTCGTTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAATAATGTTAAAACCCAAAAGCTCTGATATTTCAAAAAAGTCTAGTTTTTTTGACTTCGGATCAATTTTTCGCTGAAACTTATATTTTCCAATAGTTTTTYGAAACAGAAATTTCATTACTCTTATGTATATTGGGTCAAAACCTGAGCAATCATTTTTCACTCCAAATTTAAAAAACCTTTTTTTGAAACAGTAAGTTTTTCCTTTAAAAAAGTAGATACCTAGCGATGTCTGATTCGTTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33312</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>136657</contig_pos>
        <strand>+</strand>
        <context>TTCATTACTC[C/T]TATGTATATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGAAACTTATATTTTCCAATAGTTTTTTGAAACAGAAATTTCATTACTC</left_flank>
        <right_flank>TATGTATATTGGGTCAAAACCTGAGCAATCATTTTTCACTCCAAATTTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAATTTTCTATTCATTCAACTTTTGACAACAACTAGCTATTCCAATACTATTTTTGATAAATAAAATCTCTTAAAAATATTTTCTGAAACAGATAAAAATTTCCAAAACTCCTGAGTTTTGATCCTCCTCGTATTAATTCTCCACAAAGATTTCTGATTCAGAAGACATCCCAAATGTGTTTCTTTGCTCTTCAGAATTTGAAAAAAAAGAAGACGTCATGAGAAAAGGAAGATGAAAAGTCAAAGATTATCATTTTCTGATTCTTATCAGTTCACATGTAGTTTTTTCTTTTTCTTCGAGAACTTTTGAGTAGGCGTCCCCATTTTTATATTTTGAAATTTTTTTAAAACTTTAAAATTTTGAAATTCCGCAAAAAATAATGTTAAAACCCAAAAGCTCTGATATTTCAAAAAAGTCTAGTTTTTTTGACTTCGGATCAATTTTTCGCTGAAACTTATATTTTCCAATAGTTTTTTGAAACAGAAATTTCATTACTCTTATGTATATTGGGTCAAAACCTGAGCAATCATTTTTCACTCCAAATTTAAAAAACCTTTTTTTGAAACAGTAAGTTTTTCCTTTAAAAAAGTAGATACCTAGCGATGTCTGATTCGTTCAAAAAAAGTTCATCATCCTTTTCATTTTTTTAATTAATTAGACTGAAAAAACTAGATTTTCTAGACATATTCTCTTCTTTTCTAGAAAAATCTTTTTTCTAAAACCAGGAAACGTCACAAAACGTTCGGGTTGTCTGACAGGAAATTTAGGCTCCGCCCGTTTTTTCAAGTTATGACTCAGGTTTTTATTCTTTATAAGTGAAATCTCAGTATTTTAAAGGATCTTTTTTTCAGGTATAAGAATAACTGTTTCAAAATTTTGGTTTGAAAAATTTCAGACTTAAATCATGATTGCGAATTGCTAAATTTTTTACTGTTTCGAAAAAATAATCTGAAATGTTTGTTTCAATGAAAAATTAATCAGTTCACATAATCAGTCCT</canonical>
            <polymorphic>CGAATTTTCTATTCATTCAACTTTTGACAACAACTAGCTATTCCAATACTATTTTTGATAAATAAAATCTCTTAAAAATATTTTCTGAAACAGATAAAAATTTCCAAAACTCCTGAGTTTTGATCCTCCTCGTATTAATTCTCCACAAAGATTTCTGATTCAGAAGACATCCCAAATGTGTTTCTTTGCTCTTCAGAATTTGAAAAAAAAGAAGACGTCATGAGAAAAGGAAGATGAAAAGTCAAAGATTATCATTTTCTGATTCTTATCAGTTCACATGTAGTTTTTTCTTTTTCTTCGAGAACTTTTGAGTAGGCGTCCCCATTTTTATATTTTGAAATTTTTTTAAAACTTTAAAATTTTGAAATTCCGCAAAAAATAATGTTAAAACCCAAAAGCTCTGATATTTCAAAAAAGTCTAGTTTTTTTGACTTCGGATCAATTTTTCGCTGAAACTTATATTTTCCAATAGTTTTTTGAAACAGAAATTTCATTACTCYTATGTATATTGGGTCAAAACCTGAGCAATCATTTTTCACTCCAAATTTAAAAAACCTTTTTTTGAAACAGTAAGTTTTTCCTTTAAAAAAGTAGATACCTAGCGATGTCTGATTCGTTCAAAAAAAGTTCATCATCCTTTTCATTTTTTTAATTAATTAGACTGAAAAAACTAGATTTTCTAGACATATTCTCTTCTTTTCTAGAAAAATCTTTTTTCTAAAACCAGGAAACGTCACAAAACGTTCGGGTTGTCTGACAGGAAATTTAGGCTCCGCCCGTTTTTTCAAGTTATGACTCAGGTTTTTATTCTTTATAAGTGAAATCTCAGTATTTTAAAGGATCTTTTTTTCAGGTATAAGAATAACTGTTTCAAAATTTTGGTTTGAAAAATTTCAGACTTAAATCATGATTGCGAATTGCTAAATTTTTTACTGTTTCGAAAAAATAATCTGAAATGTTTGTTTCAATGAAAAATTAATCAGTTCACATAATCAGTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATAATGTTAAAACCCAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAACGAATCAGACATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAATAATGTTAAAACCCAAAAGCTCTGATATTTCAAAAAAGTCTAGTTTTTTTGACTTCGGATCAATTTTTCGCTGAAACTTATATTTTCCAATAGTTTTTTGAAACAGAAATTTCATTACTCTTATGTATATTGGGTCAAAACCTGAGCAATCATTTTTCACTCCAAATTTAAAAAACCTTTTTTTGAAACAGTAAGTTTTTCCTTTAAAAAAGTAGATACCTAGCGATGTCTGATTCGTTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAATAATGTTAAAACCCAAAAGCTCTGATATTTCAAAAAAGTCTAGTTTTTTTGACTTCGGATCAATTTTTCGCTGAAACTTATATTTTCCAATAGTTTTTTGAAACAGAAATTTCATTACTCYTATGTATATTGGGTCAAAACCTGAGCAATCATTTTTCACTCCAAATTTAAAAAACCTTTTTTTGAAACAGTAAGTTTTTCCTTTAAAAAAGTAGATACCTAGCGATGTCTGATTCGTTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33313</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>136836</contig_pos>
        <strand>+</strand>
        <context>AACTAGATTT[C/T]CTAGACATAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATCATCCTTTTCATTTTTTTAATTAATTAGACTGAAAAAACTAGATTT</left_flank>
        <right_flank>CTAGACATATTCTCTTCTTTTCTAGAAAAATCTTTTTTCTAAAACCAGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTCTTTGCTCTTCAGAATTTGAAAAAAAAGAAGACGTCATGAGAAAAGGAAGATGAAAAGTCAAAGATTATCATTTTCTGATTCTTATCAGTTCACATGTAGTTTTTTCTTTTTCTTCGAGAACTTTTGAGTAGGCGTCCCCATTTTTATATTTTGAAATTTTTTTAAAACTTTAAAATTTTGAAATTCCGCAAAAAATAATGTTAAAACCCAAAAGCTCTGATATTTCAAAAAAGTCTAGTTTTTTTGACTTCGGATCAATTTTTCGCTGAAACTTATATTTTCCAATAGTTTTTTGAAACAGAAATTTCATTACTCTTATGTATATTGGGTCAAAACCTGAGCAATCATTTTTCACTCCAAATTTAAAAAACCTTTTTTTGAAACAGTAAGTTTTTCCTTTAAAAAAGTAGATACCTAGCGATGTCTGATTCGTTCAAAAAAAGTTCATCATCCTTTTCATTTTTTTAATTAATTAGACTGAAAAAACTAGATTTTCTAGACATATTCTCTTCTTTTCTAGAAAAATCTTTTTTCTAAAACCAGGAAACGTCACAAAACGTTCGGGTTGTCTGACAGGAAATTTAGGCTCCGCCCGTTTTTTCAAGTTATGACTCAGGTTTTTATTCTTTATAAGTGAAATCTCAGTATTTTAAAGGATCTTTTTTTCAGGTATAAGAATAACTGTTTCAAAATTTTGGTTTGAAAAATTTCAGACTTAAATCATGATTGCGAATTGCTAAATTTTTTACTGTTTCGAAAAAATAATCTGAAATGTTTGTTTCAATGAAAAATTAATCAGTTCACATAATCAGTCCTATTTCTGTTTCAAAAACTATTTACAATTTTCTCAAAATTTCCGGTTTTTATGAAAATTCAGTTTTTTAAACACCAATTCAATAAAGTGTTTTAAGATTCTGAACCTTTTTTTTTCAGAATTTCAAGTTTTGCAAGTTCAAATTCAGAATCTCAAAACATGAGAATCGTCACGTCCAGTC</canonical>
            <polymorphic>GTTTCTTTGCTCTTCAGAATTTGAAAAAAAAGAAGACGTCATGAGAAAAGGAAGATGAAAAGTCAAAGATTATCATTTTCTGATTCTTATCAGTTCACATGTAGTTTTTTCTTTTTCTTCGAGAACTTTTGAGTAGGCGTCCCCATTTTTATATTTTGAAATTTTTTTAAAACTTTAAAATTTTGAAATTCCGCAAAAAATAATGTTAAAACCCAAAAGCTCTGATATTTCAAAAAAGTCTAGTTTTTTTGACTTCGGATCAATTTTTCGCTGAAACTTATATTTTCCAATAGTTTTTTGAAACAGAAATTTCATTACTCTTATGTATATTGGGTCAAAACCTGAGCAATCATTTTTCACTCCAAATTTAAAAAACCTTTTTTTGAAACAGTAAGTTTTTCCTTTAAAAAAGTAGATACCTAGCGATGTCTGATTCGTTCAAAAAAAGTTCATCATCCTTTTCATTTTTTTAATTAATTAGACTGAAAAAACTAGATTTYCTAGACATATTCTCTTCTTTTCTAGAAAAATCTTTTTTCTAAAACCAGGAAACGTCACAAAACGTTCGGGTTGTCTGACAGGAAATTTAGGCTCCGCCCGTTTTTTCAAGTTATGACTCAGGTTTTTATTCTTTATAAGTGAAATCTCAGTATTTTAAAGGATCTTTTTTTCAGGTATAAGAATAACTGTTTCAAAATTTTGGTTTGAAAAATTTCAGACTTAAATCATGATTGCGAATTGCTAAATTTTTTACTGTTTCGAAAAAATAATCTGAAATGTTTGTTTCAATGAAAAATTAATCAGTTCACATAATCAGTCCTATTTCTGTTTCAAAAACTATTTACAATTTTCTCAAAATTTCCGGTTTTTATGAAAATTCAGTTTTTTAAACACCAATTCAATAAAGTGTTTTAAGATTCTGAACCTTTTTTTTTCAGAATTTCAAGTTTTGCAAGTTCAAATTCAGAATCTCAAAACATGAGAATCGTCACGTCCAGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>381 273 205 80 40 21</canonical_bands>
                <polymorphic_bands>402 273 205 80 40</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 479 21</canonical_bands>
                <polymorphic_bands>521 479</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAAACAGTAAGTTTTTCCTTTA</pcr_primer_p1>
		<pcr_primer_p2>AAAAACCTGAGTCATAACTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTGAAACAGTAAGTTTTTCCTTTAAAAAAGTAGATACCTAGCGATGTCTGATTCGTTCAAAAAAAGTTCATCATCCTTTTCATTTTTTTAATTAATTAGACTGAAAAAACTAGATTTTCTAGACATATTCTCTTCTTTTCTAGAAAAATCTTTTTTCTAAAACCAGGAAACGTCACAAAACGTTCGGGTTGTCTGACAGGAAATTTAGGCTCCGCCCGTTTTTTCAAGTTATGACTCAGGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGAAACAGTAAGTTTTTCCTTTAAAAAAGTAGATACCTAGCGATGTCTGATTCGTTCAAAAAAAGTTCATCATCCTTTTCATTTTTTTAATTAATTAGACTGAAAAAACTAGATTTYCTAGACATATTCTCTTCTTTTCTAGAAAAATCTTTTTTCTAAAACCAGGAAACGTCACAAAACGTTCGGGTTGTCTGACAGGAAATTTAGGCTCCGCCCGTTTTTTCAAGTTATGACTCAGGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33314</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>136982</contig_pos>
        <strand>+</strand>
        <context>TAAGTGAAAT[C/G]TCAGTATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCCCGTTTTTTCAAGTTATGACTCAGGTTTTTATTCTTTATAAGTGAAAT</left_flank>
        <right_flank>TCAGTATTTTAAAGGATCTTTTTTTCAGGTATAAGAATAACTGTTTCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTATATTTTGAAATTTTTTTAAAACTTTAAAATTTTGAAATTCCGCAAAAAATAATGTTAAAACCCAAAAGCTCTGATATTTCAAAAAAGTCTAGTTTTTTTGACTTCGGATCAATTTTTCGCTGAAACTTATATTTTCCAATAGTTTTTTGAAACAGAAATTTCATTACTCTTATGTATATTGGGTCAAAACCTGAGCAATCATTTTTCACTCCAAATTTAAAAAACCTTTTTTTGAAACAGTAAGTTTTTCCTTTAAAAAAGTAGATACCTAGCGATGTCTGATTCGTTCAAAAAAAGTTCATCATCCTTTTCATTTTTTTAATTAATTAGACTGAAAAAACTAGATTTTCTAGACATATTCTCTTCTTTTCTAGAAAAATCTTTTTTCTAAAACCAGGAAACGTCACAAAACGTTCGGGTTGTCTGACAGGAAATTTAGGCTCCGCCCGTTTTTTCAAGTTATGACTCAGGTTTTTATTCTTTATAAGTGAAATCTCAGTATTTTAAAGGATCTTTTTTTCAGGTATAAGAATAACTGTTTCAAAATTTTGGTTTGAAAAATTTCAGACTTAAATCATGATTGCGAATTGCTAAATTTTTTACTGTTTCGAAAAAATAATCTGAAATGTTTGTTTCAATGAAAAATTAATCAGTTCACATAATCAGTCCTATTTCTGTTTCAAAAACTATTTACAATTTTCTCAAAATTTCCGGTTTTTATGAAAATTCAGTTTTTTAAACACCAATTCAATAAAGTGTTTTAAGATTCTGAACCTTTTTTTTTCAGAATTTCAAGTTTTGCAAGTTCAAATTCAGAATCTCAAAACATGAGAATCGTCACGTCCAGTCTGAAAAATCATGCTCAAAGACAAGGAAAAACTACATGTGAACTGATATGATCAGGAAATGATAATTTCTGACTTTTAACCTTCTTTTTTTTTGATGACGTCTACTCTTTTTTCCTAATTCTGAAGAGCAAAGAAACACATTTGGGA</canonical>
            <polymorphic>TTTTATATTTTGAAATTTTTTTAAAACTTTAAAATTTTGAAATTCCGCAAAAAATAATGTTAAAACCCAAAAGCTCTGATATTTCAAAAAAGTCTAGTTTTTTTGACTTCGGATCAATTTTTCGCTGAAACTTATATTTTCCAATAGTTTTTTGAAACAGAAATTTCATTACTCTTATGTATATTGGGTCAAAACCTGAGCAATCATTTTTCACTCCAAATTTAAAAAACCTTTTTTTGAAACAGTAAGTTTTTCCTTTAAAAAAGTAGATACCTAGCGATGTCTGATTCGTTCAAAAAAAGTTCATCATCCTTTTCATTTTTTTAATTAATTAGACTGAAAAAACTAGATTTTCTAGACATATTCTCTTCTTTTCTAGAAAAATCTTTTTTCTAAAACCAGGAAACGTCACAAAACGTTCGGGTTGTCTGACAGGAAATTTAGGCTCCGCCCGTTTTTTCAAGTTATGACTCAGGTTTTTATTCTTTATAAGTGAAATSTCAGTATTTTAAAGGATCTTTTTTTCAGGTATAAGAATAACTGTTTCAAAATTTTGGTTTGAAAAATTTCAGACTTAAATCATGATTGCGAATTGCTAAATTTTTTACTGTTTCGAAAAAATAATCTGAAATGTTTGTTTCAATGAAAAATTAATCAGTTCACATAATCAGTCCTATTTCTGTTTCAAAAACTATTTACAATTTTCTCAAAATTTCCGGTTTTTATGAAAATTCAGTTTTTTAAACACCAATTCAATAAAGTGTTTTAAGATTCTGAACCTTTTTTTTTCAGAATTTCAAGTTTTGCAAGTTCAAATTCAGAATCTCAAAACATGAGAATCGTCACGTCCAGTCTGAAAAATCATGCTCAAAGACAAGGAAAAACTACATGTGAACTGATATGATCAGGAAATGATAATTTCTGACTTTTAACCTTCTTTTTTTTTGATGACGTCTACTCTTTTTTCCTAATTCTGAAGAGCAAAGAAACACATTTGGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 275 196 29</canonical_bands>
                <polymorphic_bands>529 275 196</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGTCTGACAGGAAATTTAGG</pcr_primer_p1>
		<pcr_primer_p2>AGGACTGATTATGTGAACTGATT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GTTGTCTGACAGGAAATTTAGGCTCCGCCCGTTTTTTCAAGTTATGACTCAGGTTTTTATTCTTTATAAGTGAAATCTCAGTATTTTAAAGGATCTTTTTTTCAGGTATAAGAATAACTGTTTCAAAATTTTGGTTTGAAAAATTTCAGACTTAAATCATGATTGCGAATTGCTAAATTTTTTACTGTTTCGAAAAAATAATCTGAAATGTTTGTTTCAATGAAAAATTAATCAGTTCACATAATCAGTCCT</canonical_amplicon>
		<polymorphic_amplicon>GTTGTCTGACAGGAAATTTAGGCTCCGCCCGTTTTTTCAAGTTATGACTCAGGTTTTTATTCTTTATAAGTGAAATSTCAGTATTTTAAAGGATCTTTTTTTCAGGTATAAGAATAACTGTTTCAAAATTTTGGTTTGAAAAATTTCAGACTTAAATCATGATTGCGAATTGCTAAATTTTTTACTGTTTCGAAAAAATAATCTGAAATGTTTGTTTCAATGAAAAATTAATCAGTTCACATAATCAGTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33315</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>136999</contig_pos>
        <strand>+</strand>
        <context>TTTTAAAGGA[C/T]CTTTTTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGACTCAGGTTTTTATTCTTTATAAGTGAAATCTCAGTATTTTAAAGGA</left_flank>
        <right_flank>CTTTTTTTCAGGTATAAGAATAACTGTTTCAAAATTTTGGTTTGAAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTAAAACTTTAAAATTTTGAAATTCCGCAAAAAATAATGTTAAAACCCAAAAGCTCTGATATTTCAAAAAAGTCTAGTTTTTTTGACTTCGGATCAATTTTTCGCTGAAACTTATATTTTCCAATAGTTTTTTGAAACAGAAATTTCATTACTCTTATGTATATTGGGTCAAAACCTGAGCAATCATTTTTCACTCCAAATTTAAAAAACCTTTTTTTGAAACAGTAAGTTTTTCCTTTAAAAAAGTAGATACCTAGCGATGTCTGATTCGTTCAAAAAAAGTTCATCATCCTTTTCATTTTTTTAATTAATTAGACTGAAAAAACTAGATTTTCTAGACATATTCTCTTCTTTTCTAGAAAAATCTTTTTTCTAAAACCAGGAAACGTCACAAAACGTTCGGGTTGTCTGACAGGAAATTTAGGCTCCGCCCGTTTTTTCAAGTTATGACTCAGGTTTTTATTCTTTATAAGTGAAATCTCAGTATTTTAAAGGATCTTTTTTTCAGGTATAAGAATAACTGTTTCAAAATTTTGGTTTGAAAAATTTCAGACTTAAATCATGATTGCGAATTGCTAAATTTTTTACTGTTTCGAAAAAATAATCTGAAATGTTTGTTTCAATGAAAAATTAATCAGTTCACATAATCAGTCCTATTTCTGTTTCAAAAACTATTTACAATTTTCTCAAAATTTCCGGTTTTTATGAAAATTCAGTTTTTTAAACACCAATTCAATAAAGTGTTTTAAGATTCTGAACCTTTTTTTTTCAGAATTTCAAGTTTTGCAAGTTCAAATTCAGAATCTCAAAACATGAGAATCGTCACGTCCAGTCTGAAAAATCATGCTCAAAGACAAGGAAAAACTACATGTGAACTGATATGATCAGGAAATGATAATTTCTGACTTTTAACCTTCTTTTTTTTTGATGACGTCTACTCTTTTTTCCTAATTCTGAAGAGCAAAGAAACACATTTGGGACGACTTCTGGATCCTCA</canonical>
            <polymorphic>TTTTTAAAACTTTAAAATTTTGAAATTCCGCAAAAAATAATGTTAAAACCCAAAAGCTCTGATATTTCAAAAAAGTCTAGTTTTTTTGACTTCGGATCAATTTTTCGCTGAAACTTATATTTTCCAATAGTTTTTTGAAACAGAAATTTCATTACTCTTATGTATATTGGGTCAAAACCTGAGCAATCATTTTTCACTCCAAATTTAAAAAACCTTTTTTTGAAACAGTAAGTTTTTCCTTTAAAAAAGTAGATACCTAGCGATGTCTGATTCGTTCAAAAAAAGTTCATCATCCTTTTCATTTTTTTAATTAATTAGACTGAAAAAACTAGATTTTCTAGACATATTCTCTTCTTTTCTAGAAAAATCTTTTTTCTAAAACCAGGAAACGTCACAAAACGTTCGGGTTGTCTGACAGGAAATTTAGGCTCCGCCCGTTTTTTCAAGTTATGACTCAGGTTTTTATTCTTTATAAGTGAAATCTCAGTATTTTAAAGGAYCTTTTTTTCAGGTATAAGAATAACTGTTTCAAAATTTTGGTTTGAAAAATTTCAGACTTAAATCATGATTGCGAATTGCTAAATTTTTTACTGTTTCGAAAAAATAATCTGAAATGTTTGTTTCAATGAAAAATTAATCAGTTCACATAATCAGTCCTATTTCTGTTTCAAAAACTATTTACAATTTTCTCAAAATTTCCGGTTTTTATGAAAATTCAGTTTTTTAAACACCAATTCAATAAAGTGTTTTAAGATTCTGAACCTTTTTTTTTCAGAATTTCAAGTTTTGCAAGTTCAAATTCAGAATCTCAAAACATGAGAATCGTCACGTCCAGTCTGAAAAATCATGCTCAAAGACAAGGAAAAACTACATGTGAACTGATATGATCAGGAAATGATAATTTCTGACTTTTAACCTTCTTTTTTTTTGATGACGTCTACTCTTTTTTCCTAATTCTGAAGAGCAAAGAAACACATTTGGGACGACTTCTGGATCCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>403 388 107 94 8</canonical_bands>
                <polymorphic_bands>791 107 94 8</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>497 495 8</canonical_bands>
                <polymorphic_bands>992 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGTCTGACAGGAAATTTAGG</pcr_primer_p1>
		<pcr_primer_p2>AGGACTGATTATGTGAACTGATT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GTTGTCTGACAGGAAATTTAGGCTCCGCCCGTTTTTTCAAGTTATGACTCAGGTTTTTATTCTTTATAAGTGAAATCTCAGTATTTTAAAGGATCTTTTTTTCAGGTATAAGAATAACTGTTTCAAAATTTTGGTTTGAAAAATTTCAGACTTAAATCATGATTGCGAATTGCTAAATTTTTTACTGTTTCGAAAAAATAATCTGAAATGTTTGTTTCAATGAAAAATTAATCAGTTCACATAATCAGTCCT</canonical_amplicon>
		<polymorphic_amplicon>GTTGTCTGACAGGAAATTTAGGCTCCGCCCGTTTTTTCAAGTTATGACTCAGGTTTTTATTCTTTATAAGTGAAATCTCAGTATTTTAAAGGAYCTTTTTTTCAGGTATAAGAATAACTGTTTCAAAATTTTGGTTTGAAAAATTTCAGACTTAAATCATGATTGCGAATTGCTAAATTTTTTACTGTTTCGAAAAAATAATCTGAAATGTTTGTTTCAATGAAAAATTAATCAGTTCACATAATCAGTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33316</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>138370</contig_pos>
        <strand>+</strand>
        <context>GGCGCCGCAC[A/C]CTCARTCATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCGGCCGCTTTCTCTTTGCCCGCGCGGCTCAGTCGGTAGCGGCGCCGCAC</left_flank>
        <right_flank>CTCAGTCATCGCCCCCAAAAGTTCAACTCCTCGAGGGGCATCTTTGAACG</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAAACTTATTTTTTTGATCTCGGGCAAAAATCTCAAATTCCAGTTTTTCAAAAACAGCGCATGGTACCACCTACTTCTCATTTTTCAGTCACCCTTTACTTACTCAAGTATTTTGCCCTTTCTAAAAGATTCACCTGATTCATTTCTTTCTGACTACAATTTTTTTCAATTTTTTCGTAAAATTTTACAACTTCTCCAAGTGCATTCGTAAACTAATACAACATGTGTTGTCCCCCGTGTTCCTTCGACCCTAGGATATTGATGGATCATGTGTCAAAAGAGTTGGTCCCGACTGATTTCAGTATATAAATTTTTCGTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGCGGCTCAGTCGGTAGCGGCGCCGCACACTCAGTCATCGCCCCCAAAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTCATGTCCCCCCACCTTTAAACTTTTCGTTAAACTTTAATTTTTTTCAAAAACTGTTTTTTATTTTATATATTATTTTCGTCGCGTTCAAATAACTATTGAATTTTCGCTTTTTGAAATCTGTGAAACTCTTCGAAAAAATACCTTCTTTGACCCTAATTATCTCGTAAAACTAGTGGACACTGATTATCCAGACAAACAGAAATGTTTGAAAACTTTAGATTGTAATGAACCAAAGACCTTCTTTTGAAAACTATTGACAAAATTTTCGCCGAATTCCAGAAGTGCCAAAATTAACTTTTGTAGGCCTTTGAATTTTACTTTAACAGTAATCTCAAGAAATTACTGTTTCAAAACCGGACAGCATTGGCGAACGATTTGGTAGAGGAAGAGGGAGCGGGAGTAGAGACGGCATCGACAAACACTTCA</canonical>
            <polymorphic>CCAAAACTTATTTTTTTGATCTCGGGCAAAAATCTCAAATTCCAGTTTTTCAAAAACAGCGCATGGTACCACCTACTTCTCATTTTTCAGTCACCCTTTACTTACTCAAGTATTTTGCCCTTTCTAAAAGATTCACCTGATTCATTTCTTTCTGACTACAATTTTTTTCAATTTTTTCGTAAAATTTTACAACTTCTCCAAGTGCATTCGTAAACTAATACAACATGTGTTGTCCCCCGTGTTCCTTCGACCCTAGGATATTGATGGATCATGTGTCAAAAGAGTTGGTCCCGACTGATTTCAGTATATAAATTTTTCGTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGCGGCTCAGTCGGTAGCGGCGCCGCACMCTCAGTCATCGCCCCCAAAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTCATGTCCCCCCACCTTTAAACTTTTCGTTAAACTTTAATTTTTTTCAAAAACTGTTTTTTATTTTATATATTATTTTCGTCGCGTTCAAATAACTATTGAATTTTCGCTTTTTGAAATCTGTGAAACTCTTCGAAAAAATACCTTCTTTGACCCTAATTATCTCGTAAAACTAGTGGACACTGATTATCCAGACAAACAGAAATGTTTGAAAACTTTAGATTGTAATGAACCAAAGACCTTCTTTTGAAAACTATTGACAAAATTTTCGCCGAATTCCAGAAGTGCCAAAATTAACTTTTGTAGGCCTTTGAATTTTACTTTAACAGTAATCTCAAGAAATTACTGTTTCAAAACCGGACAGCATTGGCGAACGATTTGGTAGAGGAAGAGGGAGCGGGAGTAGAGACGGCATCGACAAACACTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>137 111 105 92 85 71 69 55 53 53 42 34 25 22 17 12 6 5 4 2</canonical_bands>
                <polymorphic_bands>137 111 105 92 87 71 69 55 53 53 42 34 25 22 17 12 6 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGGAGATTTTTCGTAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTTTAACGAAAAGTTTAAAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>ACAGGAGATTTTTCGTAGTTTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGCGGCTCAGTCGGTAGCGGCGCCGCACACTCAGTCATCGCCCCCAAAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTCATGTCCCCCCACCTTTAAACTTTTCGTTAAAC</canonical_amplicon>
		<polymorphic_amplicon>ACAGGAGATTTTTCGTAGTTTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGCGGCTCAGTCGGTAGCGGCGCCGCACMCTCAGTCATCGCCCCCAAAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTCATGTCCCCCCACCTTTAAACTTTTCGTTAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33317</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>138375</contig_pos>
        <strand>+</strand>
        <context>CGCACMCTCA[A/G]TCATCGCCCY</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCTTTCTCTTTGCCCGCGCGGCTCAGTCGGTAGCGGCGCCGCACACTCA</left_flank>
        <right_flank>TCATCGCCCCCAAAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATT</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTATTTTTTTGATCTCGGGCAAAAATCTCAAATTCCAGTTTTTCAAAAACAGCGCATGGTACCACCTACTTCTCATTTTTCAGTCACCCTTTACTTACTCAAGTATTTTGCCCTTTCTAAAAGATTCACCTGATTCATTTCTTTCTGACTACAATTTTTTTCAATTTTTTCGTAAAATTTTACAACTTCTCCAAGTGCATTCGTAAACTAATACAACATGTGTTGTCCCCCGTGTTCCTTCGACCCTAGGATATTGATGGATCATGTGTCAAAAGAGTTGGTCCCGACTGATTTCAGTATATAAATTTTTCGTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGCGGCTCAGTCGGTAGCGGCGCCGCACACTCAGTCATCGCCCCCAAAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTCATGTCCCCCCACCTTTAAACTTTTCGTTAAACTTTAATTTTTTTCAAAAACTGTTTTTTATTTTATATATTATTTTCGTCGCGTTCAAATAACTATTGAATTTTCGCTTTTTGAAATCTGTGAAACTCTTCGAAAAAATACCTTCTTTGACCCTAATTATCTCGTAAAACTAGTGGACACTGATTATCCAGACAAACAGAAATGTTTGAAAACTTTAGATTGTAATGAACCAAAGACCTTCTTTTGAAAACTATTGACAAAATTTTCGCCGAATTCCAGAAGTGCCAAAATTAACTTTTGTAGGCCTTTGAATTTTACTTTAACAGTAATCTCAAGAAATTACTGTTTCAAAACCGGACAGCATTGGCGAACGATTTGGTAGAGGAAGAGGGAGCGGGAGTAGAGACGGCATCGACAAACACTTCAGAAAG</canonical>
            <polymorphic>ACTTATTTTTTTGATCTCGGGCAAAAATCTCAAATTCCAGTTTTTCAAAAACAGCGCATGGTACCACCTACTTCTCATTTTTCAGTCACCCTTTACTTACTCAAGTATTTTGCCCTTTCTAAAAGATTCACCTGATTCATTTCTTTCTGACTACAATTTTTTTCAATTTTTTCGTAAAATTTTACAACTTCTCCAAGTGCATTCGTAAACTAATACAACATGTGTTGTCCCCCGTGTTCCTTCGACCCTAGGATATTGATGGATCATGTGTCAAAAGAGTTGGTCCCGACTGATTTCAGTATATAAATTTTTCGTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGCGGCTCAGTCGGTAGCGGCGCCGCACACTCARTCATCGCCCCCAAAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTCATGTCCCCCCACCTTTAAACTTTTCGTTAAACTTTAATTTTTTTCAAAAACTGTTTTTTATTTTATATATTATTTTCGTCGCGTTCAAATAACTATTGAATTTTCGCTTTTTGAAATCTGTGAAACTCTTCGAAAAAATACCTTCTTTGACCCTAATTATCTCGTAAAACTAGTGGACACTGATTATCCAGACAAACAGAAATGTTTGAAAACTTTAGATTGTAATGAACCAAAGACCTTCTTTTGAAAACTATTGACAAAATTTTCGCCGAATTCCAGAAGTGCCAAAATTAACTTTTGTAGGCCTTTGAATTTTACTTTAACAGTAATCTCAAGAAATTACTGTTTCAAAACCGGACAGCATTGGCGAACGATTTGGTAGAGGAAGAGGGAGCGGGAGTAGAGACGGCATCGACAAACACTTCAGAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 472 24</canonical_bands>
                <polymorphic_bands>528 472</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGGAGATTTTTCGTAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTTTAACGAAAAGTTTAAAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>ACAGGAGATTTTTCGTAGTTTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGCGGCTCAGTCGGTAGCGGCGCCGCACACTCAGTCATCGCCCCCAAAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTCATGTCCCCCCACCTTTAAACTTTTCGTTAAAC</canonical_amplicon>
		<polymorphic_amplicon>ACAGGAGATTTTTCGTAGTTTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGCGGCTCAGTCGGTAGCGGCGCCGCACACTCARTCATCGCCCCCAAAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTCATGTCCCCCCACCTTTAAACTTTTCGTTAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33318</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>138385</contig_pos>
        <strand>+</strand>
        <context>RTCATCGCCC[C/T]CAMaagttca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGCCCGCGCGGCTCAGTCGGTAGCGGCGCCGCACACTCAGTCATCGCCC</left_flank>
        <right_flank>CAAAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACAT</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGATCTCGGGCAAAAATCTCAAATTCCAGTTTTTCAAAAACAGCGCATGGTACCACCTACTTCTCATTTTTCAGTCACCCTTTACTTACTCAAGTATTTTGCCCTTTCTAAAAGATTCACCTGATTCATTTCTTTCTGACTACAATTTTTTTCAATTTTTTCGTAAAATTTTACAACTTCTCCAAGTGCATTCGTAAACTAATACAACATGTGTTGTCCCCCGTGTTCCTTCGACCCTAGGATATTGATGGATCATGTGTCAAAAGAGTTGGTCCCGACTGATTTCAGTATATAAATTTTTCGTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGCGGCTCAGTCGGTAGCGGCGCCGCACACTCAGTCATCGCCCCCAAAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTCATGTCCCCCCACCTTTAAACTTTTCGTTAAACTTTAATTTTTTTCAAAAACTGTTTTTTATTTTATATATTATTTTCGTCGCGTTCAAATAACTATTGAATTTTCGCTTTTTGAAATCTGTGAAACTCTTCGAAAAAATACCTTCTTTGACCCTAATTATCTCGTAAAACTAGTGGACACTGATTATCCAGACAAACAGAAATGTTTGAAAACTTTAGATTGTAATGAACCAAAGACCTTCTTTTGAAAACTATTGACAAAATTTTCGCCGAATTCCAGAAGTGCCAAAATTAACTTTTGTAGGCCTTTGAATTTTACTTTAACAGTAATCTCAAGAAATTACTGTTTCAAAACCGGACAGCATTGGCGAACGATTTGGTAGAGGAAGAGGGAGCGGGAGTAGAGACGGCATCGACAAACACTTCAGAAAGTGCTGAGACA</canonical>
            <polymorphic>TTGATCTCGGGCAAAAATCTCAAATTCCAGTTTTTCAAAAACAGCGCATGGTACCACCTACTTCTCATTTTTCAGTCACCCTTTACTTACTCAAGTATTTTGCCCTTTCTAAAAGATTCACCTGATTCATTTCTTTCTGACTACAATTTTTTTCAATTTTTTCGTAAAATTTTACAACTTCTCCAAGTGCATTCGTAAACTAATACAACATGTGTTGTCCCCCGTGTTCCTTCGACCCTAGGATATTGATGGATCATGTGTCAAAAGAGTTGGTCCCGACTGATTTCAGTATATAAATTTTTCGTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGCGGCTCAGTCGGTAGCGGCGCCGCACACTCAGTCATCGCCCYCAAAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTCATGTCCCCCCACCTTTAAACTTTTCGTTAAACTTTAATTTTTTTCAAAAACTGTTTTTTATTTTATATATTATTTTCGTCGCGTTCAAATAACTATTGAATTTTCGCTTTTTGAAATCTGTGAAACTCTTCGAAAAAATACCTTCTTTGACCCTAATTATCTCGTAAAACTAGTGGACACTGATTATCCAGACAAACAGAAATGTTTGAAAACTTTAGATTGTAATGAACCAAAGACCTTCTTTTGAAAACTATTGACAAAATTTTCGCCGAATTCCAGAAGTGCCAAAATTAACTTTTGTAGGCCTTTGAATTTTACTTTAACAGTAATCTCAAGAAATTACTGTTTCAAAACCGGACAGCATTGGCGAACGATTTGGTAGAGGAAGAGGGAGCGGGAGTAGAGACGGCATCGACAAACACTTCAGAAAGTGCTGAGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGGAGATTTTTCGTAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTTTAACGAAAAGTTTAAAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>ACAGGAGATTTTTCGTAGTTTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGCGGCTCAGTCGGTAGCGGCGCCGCACACTCAGTCATCGCCCCCAAAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTCATGTCCCCCCACCTTTAAACTTTTCGTTAAAC</canonical_amplicon>
		<polymorphic_amplicon>ACAGGAGATTTTTCGTAGTTTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGCGGCTCAGTCGGTAGCGGCGCCGCACACTCAGTCATCGCCCYCAAAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTCATGTCCCCCCACCTTTAAACTTTTCGTTAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33319</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>138388</contig_pos>
        <strand>+</strand>
        <context>ATCGCCCYCA[A/C]aagttcaact</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCCGCGCGGCTCAGTCGGTAGCGGCGCCGCACACTCAGTCATCGCCCCCA</left_flank>
        <right_flank>AAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTAT</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTCGGGCAAAAATCTCAAATTCCAGTTTTTCAAAAACAGCGCATGGTACCACCTACTTCTCATTTTTCAGTCACCCTTTACTTACTCAAGTATTTTGCCCTTTCTAAAAGATTCACCTGATTCATTTCTTTCTGACTACAATTTTTTTCAATTTTTTCGTAAAATTTTACAACTTCTCCAAGTGCATTCGTAAACTAATACAACATGTGTTGTCCCCCGTGTTCCTTCGACCCTAGGATATTGATGGATCATGTGTCAAAAGAGTTGGTCCCGACTGATTTCAGTATATAAATTTTTCGTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGCGGCTCAGTCGGTAGCGGCGCCGCACACTCAGTCATCGCCCCCAAAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTCATGTCCCCCCACCTTTAAACTTTTCGTTAAACTTTAATTTTTTTCAAAAACTGTTTTTTATTTTATATATTATTTTCGTCGCGTTCAAATAACTATTGAATTTTCGCTTTTTGAAATCTGTGAAACTCTTCGAAAAAATACCTTCTTTGACCCTAATTATCTCGTAAAACTAGTGGACACTGATTATCCAGACAAACAGAAATGTTTGAAAACTTTAGATTGTAATGAACCAAAGACCTTCTTTTGAAAACTATTGACAAAATTTTCGCCGAATTCCAGAAGTGCCAAAATTAACTTTTGTAGGCCTTTGAATTTTACTTTAACAGTAATCTCAAGAAATTACTGTTTCAAAACCGGACAGCATTGGCGAACGATTTGGTAGAGGAAGAGGGAGCGGGAGTAGAGACGGCATCGACAAACACTTCAGAAAGTGCTGAGACAGGA</canonical>
            <polymorphic>ATCTCGGGCAAAAATCTCAAATTCCAGTTTTTCAAAAACAGCGCATGGTACCACCTACTTCTCATTTTTCAGTCACCCTTTACTTACTCAAGTATTTTGCCCTTTCTAAAAGATTCACCTGATTCATTTCTTTCTGACTACAATTTTTTTCAATTTTTTCGTAAAATTTTACAACTTCTCCAAGTGCATTCGTAAACTAATACAACATGTGTTGTCCCCCGTGTTCCTTCGACCCTAGGATATTGATGGATCATGTGTCAAAAGAGTTGGTCCCGACTGATTTCAGTATATAAATTTTTCGTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGCGGCTCAGTCGGTAGCGGCGCCGCACACTCAGTCATCGCCCCCAMAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTCATGTCCCCCCACCTTTAAACTTTTCGTTAAACTTTAATTTTTTTCAAAAACTGTTTTTTATTTTATATATTATTTTCGTCGCGTTCAAATAACTATTGAATTTTCGCTTTTTGAAATCTGTGAAACTCTTCGAAAAAATACCTTCTTTGACCCTAATTATCTCGTAAAACTAGTGGACACTGATTATCCAGACAAACAGAAATGTTTGAAAACTTTAGATTGTAATGAACCAAAGACCTTCTTTTGAAAACTATTGACAAAATTTTCGCCGAATTCCAGAAGTGCCAAAATTAACTTTTGTAGGCCTTTGAATTTTACTTTAACAGTAATCTCAAGAAATTACTGTTTCAAAACCGGACAGCATTGGCGAACGATTTGGTAGAGGAAGAGGGAGCGGGAGTAGAGACGGCATCGACAAACACTTCAGAAAGTGCTGAGACAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGGAGATTTTTCGTAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTTTAACGAAAAGTTTAAAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>ACAGGAGATTTTTCGTAGTTTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGCGGCTCAGTCGGTAGCGGCGCCGCACACTCAGTCATCGCCCCCAAAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTCATGTCCCCCCACCTTTAAACTTTTCGTTAAAC</canonical_amplicon>
		<polymorphic_amplicon>ACAGGAGATTTTTCGTAGTTTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGCGGCTCAGTCGGTAGCGGCGCCGCACACTCAGTCATCGCCCCCAMAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTCATGTCCCCCCACCTTTAAACTTTTCGTTAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33320</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>138521</contig_pos>
        <strand></strand>
        <context>ATATTAtttt[C/A]gtcrcgttca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTAAACTTTAATTTTTTTCAAAAACTGTTTTTTATTTTATATATTATTTT</left_flank>
        <right_flank>GTCGCGTTCAAATAACTATTGAATTTTCGCTTTTTGAAATCTGTGAAACT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGACTACAATTTTTTTCAATTTTTTCGTAAAATTTTACAACTTCTCCAAGTGCATTCGTAAACTAATACAACATGTGTTGTCCCCCGTGTTCCTTCGACCCTAGGATATTGATGGATCATGTGTCAAAAGAGTTGGTCCCGACTGATTTCAGTATATAAATTTTTCGTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGCGGCTCAGTCGGTAGCGGCGCCGCACACTCAGTCATCGCCCCCAAAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTCATGTCCCCCCACCTTTAAACTTTTCGTTAAACTTTAATTTTTTTCAAAAACTGTTTTTTATTTTATATATTATTTTCGTCGCGTTCAAATAACTATTGAATTTTCGCTTTTTGAAATCTGTGAAACTCTTCGAAAAAATACCTTCTTTGACCCTAATTATCTCGTAAAACTAGTGGACACTGATTATCCAGACAAACAGAAATGTTTGAAAACTTTAGATTGTAATGAACCAAAGACCTTCTTTTGAAAACTATTGACAAAATTTTCGCCGAATTCCAGAAGTGCCAAAATTAACTTTTGTAGGCCTTTGAATTTTACTTTAACAGTAATCTCAAGAAATTACTGTTTCAAAACCGGACAGCATTGGCGAACGATTTGGTAGAGGAAGAGGGAGCGGGAGTAGAGACGGCATCGACAAACACTTCAGAAAGTGCTGAGACAGGAGGTCCAAGTTGGGGCGGATCGGGAGTGGTCTGGCAAGTATTCGCAATTATCTTACCAAGTTTGGTGGATCCTTCTTCAATCAGTCCATCTCGGATTTGTTGGATAATGTCGGTTAGAACAGTTACGTGCTTGT</canonical>
            <polymorphic>CTGACTACAATTTTTTTCAATTTTTTCGTAAAATTTTACAACTTCTCCAAGTGCATTCGTAAACTAATACAACATGTGTTGTCCCCCGTGTTCCTTCGACCCTAGGATATTGATGGATCATGTGTCAAAAGAGTTGGTCCCGACTGATTTCAGTATATAAATTTTTCGTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGCGGCTCAGTCGGTAGCGGCGCCGCACACTCAGTCATCGCCCCCAAAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTCATGTCCCCCCACCTTTAAACTTTTCGTTAAACTTTAATTTTTTTCAAAAACTGTTTTTTATTTTATATATTATTTTMGTCGCGTTCAAATAACTATTGAATTTTCGCTTTTTGAAATCTGTGAAACTCTTCGAAAAAATACCTTCTTTGACCCTAATTATCTCGTAAAACTAGTGGACACTGATTATCCAGACAAACAGAAATGTTTGAAAACTTTAGATTGTAATGAACCAAAGACCTTCTTTTGAAAACTATTGACAAAATTTTCGCCGAATTCCAGAAGTGCCAAAATTAACTTTTGTAGGCCTTTGAATTTTACTTTAACAGTAATCTCAAGAAATTACTGTTTCAAAACCGGACAGCATTGGCGAACGATTTGGTAGAGGAAGAGGGAGCGGGAGTAGAGACGGCATCGACAAACACTTCAGAAAGTGCTGAGACAGGAGGTCCAAGTTGGGGCGGATCGGGAGTGGTCTGGCAAGTATTCGCAATTATCTTACCAAGTTTGGTGGATCCTTCTTCAATCAGTCCATCTCGGATTTGTTGGATAATGTCGGTTAGAACAGTTACGTGCTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACCTTTAAACTTTTCGTTAAACT</pcr_primer_p1>
		<pcr_primer_p2>TCAATAGTTTTCAAAAGAAGGTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CACCTTTAAACTTTTCGTTAAACTTTAATTTTTTTCAAAAACTGTTTTTTATTTTATATATTATTTTCGTCGCGTTCAAATAACTATTGAATTTTCGCTTTTTGAAATCTGTGAAACTCTTCGAAAAAATACCTTCTTTGACCCTAATTATCTCGTAAAACTAGTGGACACTGATTATCCAGACAAACAGAAATGTTTGAAAACTTTAGATTGTAATGAACCAAAGACCTTCTTTTGAAAACTATTGA</canonical_amplicon>
		<polymorphic_amplicon>CACCTTTAAACTTTTCGTTAAACTTTAATTTTTTTCAAAAACTGTTTTTTATTTTATATATTATTTTMGTCGCGTTCAAATAACTATTGAATTTTCGCTTTTTGAAATCTGTGAAACTCTTCGAAAAAATACCTTCTTTGACCCTAATTATCTCGTAAAACTAGTGGACACTGATTATCCAGACAAACAGAAATGTTTGAAAACTTTAGATTGTAATGAACCAAAGACCTTCTTTTGAAAACTATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33321</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>138525</contig_pos>
        <strand></strand>
        <context>TAttttmgtc[G/A]cgttcaaata</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACTTTAATTTTTTTCAAAAACTGTTTTTTATTTTATATATTATTTTCGTC</left_flank>
        <right_flank>CGTTCAAATAACTATTGAATTTTCGCTTTTTGAAATCTGTGAAACTCTTC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTACAATTTTTTTCAATTTTTTCGTAAAATTTTACAACTTCTCCAAGTGCATTCGTAAACTAATACAACATGTGTTGTCCCCCGTGTTCCTTCGACCCTAGGATATTGATGGATCATGTGTCAAAAGAGTTGGTCCCGACTGATTTCAGTATATAAATTTTTCGTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGCGGCTCAGTCGGTAGCGGCGCCGCACACTCAGTCATCGCCCCCAAAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTCATGTCCCCCCACCTTTAAACTTTTCGTTAAACTTTAATTTTTTTCAAAAACTGTTTTTTATTTTATATATTATTTTCGTCGCGTTCAAATAACTATTGAATTTTCGCTTTTTGAAATCTGTGAAACTCTTCGAAAAAATACCTTCTTTGACCCTAATTATCTCGTAAAACTAGTGGACACTGATTATCCAGACAAACAGAAATGTTTGAAAACTTTAGATTGTAATGAACCAAAGACCTTCTTTTGAAAACTATTGACAAAATTTTCGCCGAATTCCAGAAGTGCCAAAATTAACTTTTGTAGGCCTTTGAATTTTACTTTAACAGTAATCTCAAGAAATTACTGTTTCAAAACCGGACAGCATTGGCGAACGATTTGGTAGAGGAAGAGGGAGCGGGAGTAGAGACGGCATCGACAAACACTTCAGAAAGTGCTGAGACAGGAGGTCCAAGTTGGGGCGGATCGGGAGTGGTCTGGCAAGTATTCGCAATTATCTTACCAAGTTTGGTGGATCCTTCTTCAATCAGTCCATCTCGGATTTGTTGGATAATGTCGGTTAGAACAGTTACGTGCTTGTGCAT</canonical>
            <polymorphic>CTACAATTTTTTTCAATTTTTTCGTAAAATTTTACAACTTCTCCAAGTGCATTCGTAAACTAATACAACATGTGTTGTCCCCCGTGTTCCTTCGACCCTAGGATATTGATGGATCATGTGTCAAAAGAGTTGGTCCCGACTGATTTCAGTATATAAATTTTTCGTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGCGGCTCAGTCGGTAGCGGCGCCGCACACTCAGTCATCGCCCCCAAAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTCATGTCCCCCCACCTTTAAACTTTTCGTTAAACTTTAATTTTTTTCAAAAACTGTTTTTTATTTTATATATTATTTTCGTCRCGTTCAAATAACTATTGAATTTTCGCTTTTTGAAATCTGTGAAACTCTTCGAAAAAATACCTTCTTTGACCCTAATTATCTCGTAAAACTAGTGGACACTGATTATCCAGACAAACAGAAATGTTTGAAAACTTTAGATTGTAATGAACCAAAGACCTTCTTTTGAAAACTATTGACAAAATTTTCGCCGAATTCCAGAAGTGCCAAAATTAACTTTTGTAGGCCTTTGAATTTTACTTTAACAGTAATCTCAAGAAATTACTGTTTCAAAACCGGACAGCATTGGCGAACGATTTGGTAGAGGAAGAGGGAGCGGGAGTAGAGACGGCATCGACAAACACTTCAGAAAGTGCTGAGACAGGAGGTCCAAGTTGGGGCGGATCGGGAGTGGTCTGGCAAGTATTCGCAATTATCTTACCAAGTTTGGTGGATCCTTCTTCAATCAGTCCATCTCGGATTTGTTGGATAATGTCGGTTAGAACAGTTACGTGCTTGTGCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 316 182 2</canonical_bands>
                <polymorphic_bands>682 316 2</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACCTTTAAACTTTTCGTTAAACT</pcr_primer_p1>
		<pcr_primer_p2>TCAATAGTTTTCAAAAGAAGGTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CACCTTTAAACTTTTCGTTAAACTTTAATTTTTTTCAAAAACTGTTTTTTATTTTATATATTATTTTCGTCGCGTTCAAATAACTATTGAATTTTCGCTTTTTGAAATCTGTGAAACTCTTCGAAAAAATACCTTCTTTGACCCTAATTATCTCGTAAAACTAGTGGACACTGATTATCCAGACAAACAGAAATGTTTGAAAACTTTAGATTGTAATGAACCAAAGACCTTCTTTTGAAAACTATTGA</canonical_amplicon>
		<polymorphic_amplicon>CACCTTTAAACTTTTCGTTAAACTTTAATTTTTTTCAAAAACTGTTTTTTATTTTATATATTATTTTCGTCRCGTTCAAATAACTATTGAATTTTCGCTTTTTGAAATCTGTGAAACTCTTCGAAAAAATACCTTCTTTGACCCTAATTATCTCGTAAAACTAGTGGACACTGATTATCCAGACAAACAGAAATGTTTGAAAACTTTAGATTGTAATGAACCAAAGACCTTCTTTTGAAAACTATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33322</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>138587</contig_pos>
        <strand></strand>
        <context>aaaaaatacc[T/C]tctttgaccc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTATTGAATTTTCGCTTTTTGAAATCTGTGAAACTCTTCGAAAAAATACC</left_flank>
        <right_flank>TCTTTGACCCTAATTATCTCGTAAAACTAGTGGACACTGATTATCCAGAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATACAACATGTGTTGTCCCCCGTGTTCCTTCGACCCTAGGATATTGATGGATCATGTGTCAAAAGAGTTGGTCCCGACTGATTTCAGTATATAAATTTTTCGTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGCGGCTCAGTCGGTAGCGGCGCCGCACACTCAGTCATCGCCCCCAAAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTCATGTCCCCCCACCTTTAAACTTTTCGTTAAACTTTAATTTTTTTCAAAAACTGTTTTTTATTTTATATATTATTTTCGTCGCGTTCAAATAACTATTGAATTTTCGCTTTTTGAAATCTGTGAAACTCTTCGAAAAAATACCTTCTTTGACCCTAATTATCTCGTAAAACTAGTGGACACTGATTATCCAGACAAACAGAAATGTTTGAAAACTTTAGATTGTAATGAACCAAAGACCTTCTTTTGAAAACTATTGACAAAATTTTCGCCGAATTCCAGAAGTGCCAAAATTAACTTTTGTAGGCCTTTGAATTTTACTTTAACAGTAATCTCAAGAAATTACTGTTTCAAAACCGGACAGCATTGGCGAACGATTTGGTAGAGGAAGAGGGAGCGGGAGTAGAGACGGCATCGACAAACACTTCAGAAAGTGCTGAGACAGGAGGTCCAAGTTGGGGCGGATCGGGAGTGGTCTGGCAAGTATTCGCAATTATCTTACCAAGTTTGGTGGATCCTTCTTCAATCAGTCCATCTCGGATTTGTTGGATAATGTCGGTTAGAACAGTTACGTGCTTGTGCATTGCCAGATAATCATCATATGCCATAAACAGTGGAGGCTCGGAGTCCAGGCTCGAATGGAATT</canonical>
            <polymorphic>ATACAACATGTGTTGTCCCCCGTGTTCCTTCGACCCTAGGATATTGATGGATCATGTGTCAAAAGAGTTGGTCCCGACTGATTTCAGTATATAAATTTTTCGTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGCGGCTCAGTCGGTAGCGGCGCCGCACACTCAGTCATCGCCCCCAAAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTCATGTCCCCCCACCTTTAAACTTTTCGTTAAACTTTAATTTTTTTCAAAAACTGTTTTTTATTTTATATATTATTTTCGTCGCGTTCAAATAACTATTGAATTTTCGCTTTTTGAAATCTGTGAAACTCTTCGAAAAAATACCYTCTTTGACCCTAATTATCTCGTAAAACTAGTGGACACTGATTATCCAGACAAACAGAAATGTTTGAAAACTTTAGATTGTAATGAACCAAAGACCTTCTTTTGAAAACTATTGACAAAATTTTCGCCGAATTCCAGAAGTGCCAAAATTAACTTTTGTAGGCCTTTGAATTTTACTTTAACAGTAATCTCAAGAAATTACTGTTTCAAAACCGGACAGCATTGGCGAACGATTTGGTAGAGGAAGAGGGAGCGGGAGTAGAGACGGCATCGACAAACACTTCAGAAAGTGCTGAGACAGGAGGTCCAAGTTGGGGCGGATCGGGAGTGGTCTGGCAAGTATTCGCAATTATCTTACCAAGTTTGGTGGATCCTTCTTCAATCAGTCCATCTCGGATTTGTTGGATAATGTCGGTTAGAACAGTTACGTGCTTGTGCATTGCCAGATAATCATCATATGCCATAAACAGTGGAGGCTCGGAGTCCAGGCTCGAATGGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCTTTAAACTTTTCGTTAAACT</pcr_primer_p1>
		<pcr_primer_p2>TCAATAGTTTTCAAAAGAAGGTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CACCTTTAAACTTTTCGTTAAACTTTAATTTTTTTCAAAAACTGTTTTTTATTTTATATATTATTTTCGTCGCGTTCAAATAACTATTGAATTTTCGCTTTTTGAAATCTGTGAAACTCTTCGAAAAAATACCTTCTTTGACCCTAATTATCTCGTAAAACTAGTGGACACTGATTATCCAGACAAACAGAAATGTTTGAAAACTTTAGATTGTAATGAACCAAAGACCTTCTTTTGAAAACTATTGA</canonical_amplicon>
		<polymorphic_amplicon>CACCTTTAAACTTTTCGTTAAACTTTAATTTTTTTCAAAAACTGTTTTTTATTTTATATATTATTTTCGTCGCGTTCAAATAACTATTGAATTTTCGCTTTTTGAAATCTGTGAAACTCTTCGAAAAAATACCYTCTTTGACCCTAATTATCTCGTAAAACTAGTGGACACTGATTATCCAGACAAACAGAAATGTTTGAAAACTTTAGATTGTAATGAACCAAAGACCTTCTTTTGAAAACTATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33323</snp_id>
        <super_contig>c008101470.Contig1</super_contig>
        <contig_pos>138744</contig_pos>
        <strand>+</strand>
        <context>ATTAACTTTT[G/T]TAGGCCTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTATTGACAAAATTTTCGCCGAATTCCAGAAGTGCCAAAATTAACTTTT</left_flank>
        <right_flank>TAGGCCTTTGAATTTTACTTTAACAGTAATCTCAAGAAATTACTGTTTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTACCGTGACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGCGGCTCAGTCGGTAGCGGCGCCGCACACTCAGTCATCGCCCCCAAAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTCATGTCCCCCCACCTTTAAACTTTTCGTTAAACTTTAATTTTTTTCAAAAACTGTTTTTTATTTTATATATTATTTTCGTCGCGTTCAAATAACTATTGAATTTTCGCTTTTTGAAATCTGTGAAACTCTTCGAAAAAATACCTTCTTTGACCCTAATTATCTCGTAAAACTAGTGGACACTGATTATCCAGACAAACAGAAATGTTTGAAAACTTTAGATTGTAATGAACCAAAGACCTTCTTTTGAAAACTATTGACAAAATTTTCGCCGAATTCCAGAAGTGCCAAAATTAACTTTTGTAGGCCTTTGAATTTTACTTTAACAGTAATCTCAAGAAATTACTGTTTCAAAACCGGACAGCATTGGCGAACGATTTGGTAGAGGAAGAGGGAGCGGGAGTAGAGACGGCATCGACAAACACTTCAGAAAGTGCTGAGACAGGAGGTCCAAGTTGGGGCGGATCGGGAGTGGTCTGGCAAGTATTCGCAATTATCTTACCAAGTTTGGTGGATCCTTCTTCAATCAGTCCATCTCGGATTTGTTGGATAATGTCGGTTAGAACAGTTACGTGCTTGTGCATTGCCAGATAATCATCATATGCCATAAACAGTGGAGGCTCGGAGTCCAGGCTCGAATGGAATTTCCTCTTGGCTGGAGGCGCCATGGCAGACATGGCGATGATGGCAAAAAGTTAGCGAAAGGCAAAAAGTTAGCGAAAGGCAAAAAGTTAGCGAATGGCAAAAAGTTAGAGAAAATATTGTCGAGATTCTGATTTCCTAAGTTTTAATAACTTCAAATC</canonical>
            <polymorphic>TCTACCGTGACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGCGGCTCAGTCGGTAGCGGCGCCGCACACTCAGTCATCGCCCCCAAAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTCATGTCCCCCCACCTTTAAACTTTTCGTTAAACTTTAATTTTTTTCAAAAACTGTTTTTTATTTTATATATTATTTTCGTCGCGTTCAAATAACTATTGAATTTTCGCTTTTTGAAATCTGTGAAACTCTTCGAAAAAATACCTTCTTTGACCCTAATTATCTCGTAAAACTAGTGGACACTGATTATCCAGACAAACAGAAATGTTTGAAAACTTTAGATTGTAATGAACCAAAGACCTTCTTTTGAAAACTATTGACAAAATTTTCGCCGAATTCCAGAAGTGCCAAAATTAACTTTTKTAGGCCTTTGAATTTTACTTTAACAGTAATCTCAAGAAATTACTGTTTCAAAACCGGACAGCATTGGCGAACGATTTGGTAGAGGAAGAGGGAGCGGGAGTAGAGACGGCATCGACAAACACTTCAGAAAGTGCTGAGACAGGAGGTCCAAGTTGGGGCGGATCGGGAGTGGTCTGGCAAGTATTCGCAATTATCTTACCAAGTTTGGTGGATCCTTCTTCAATCAGTCCATCTCGGATTTGTTGGATAATGTCGGTTAGAACAGTTACGTGCTTGTGCATTGCCAGATAATCATCATATGCCATAAACAGTGGAGGCTCGGAGTCCAGGCTCGAATGGAATTTCCTCTTGGCTGGAGGCGCCATGGCAGACATGGCGATGATGGCAAAAAGTTAGCGAAAGGCAAAAAGTTAGCGAAAGGCAAAAAGTTAGCGAATGGCAAAAAGTTAGAGAAAATATTGTCGAGATTCTGATTTCCTAAGTTTTAATAACTTCAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTCTTTTGAAAACTATTGACA</pcr_primer_p1>
		<pcr_primer_p2>GAATACTTGCCAGACCACTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTTCTTTTGAAAACTATTGACAAAATTTTCGCCGAATTCCAGAAGTGCCAAAATTAACTTTTGTAGGCCTTTGAATTTTACTTTAACAGTAATCTCAAGAAATTACTGTTTCAAAACCGGACAGCATTGGCGAACGATTTGGTAGAGGAAGAGGGAGCGGGAGTAGAGACGGCATCGACAAACACTTCAGAAAGTGCTGAGACAGGAGGTCCAAGTTGGGGCGGATCGGGAGTGGTCTGGCAAGTATTC</canonical_amplicon>
		<polymorphic_amplicon>CCTTCTTTTGAAAACTATTGACAAAATTTTCGCCGAATTCCAGAAGTGCCAAAATTAACTTTTKTAGGCCTTTGAATTTTACTTTAACAGTAATCTCAAGAAATTACTGTTTCAAAACCGGACAGCATTGGCGAACGATTTGGTAGAGGAAGAGGGAGCGGGAGTAGAGACGGCATCGACAAACACTTCAGAAAGTGCTGAGACAGGAGGTCCAAGTTGGGGCGGATCGGGAGTGGTCTGGCAAGTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33324</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>44131</contig_pos>
        <strand>+</strand>
        <context>CCCCCGACTA[C/T]TACCTACTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCCGTTCAAGGTGAAATATTTTCGAATCTTGCTGTTATCCCCCGACTA</left_flank>
        <right_flank>TACCTACTGTCATTGTTCCAGTCACAAACCCAAAAAAGAAGGAAAAAACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAGGTTATTTTTAAGTTATTCAAACTGCTTGCTTTTTCACAAACCAAAATGATGACATATGAGTTAGAAACTTTTTGAAAAAATTCACAGTGTTTGGGATGACTGTGGGCAACTTTACCAATAAATTCACGGTGTCCAATACAAAACAAGGAGCCAAATCAAGATTTCTCAGACTCACATGGTAGAACCTATGTGTGGGACAGCTGCCGCCTCCAGAGGGAACAAGATAAACTACTAGCACTTTTCACTAAATTAGCATGAAAACATACATGAATTAAAAGGAGTGTCCGTCTGACGCCACCACCACCGTCAGAGCATCTAACGCCTCCGGCACGACCACATCTACCAAGTCGGGGGGCTGTTTTCCACCAATTCCTTTTCCCATCCACTTTTCCAAGCACCAATTCCTGGTCGCTTTTCAATTTGAAAACATTTATTTTTCATTTCTTTCCGTTCAAGGTGAAATATTTTCGAATCTTGCTGTTATCCCCCGACTACTACCTACTGTCATTGTTCCAGTCACAAACCCAAAAAAGAAGGAAAAAACCTCTGTCAAACGTTTTTTTTGGTGGAAGAAATGTGAAAGCGTTCAAAACACCATTAGTAAATAATAGTTAGAAAAAGGAGAAGAAAATGACAATAGCAAGGAAGGGGAAAGAAAAGAAAAATAGGAAATAAATAAGTAAAGGAGAAAAGAATGAAGAAATCAAAAATAGTGAAGTTTGGAGAAATAAGGAGAAGAGAGACATGAAAAGAAGAAGCAGTTTATGAAATTACTGTTATACGATTAGCATAGGTTTTCTGGCTGGCGTAGTATTACACCTGTCTAGAAAAATAACTAAAACAATTTTTTTTTCTGATTTTGGCAAAACATTTTTTGCTTTATTGCAGATATTTTTAAAGGAAAACTGCCACGTTTTATCAGGACTACAAATTAATTTTCCTTTGAAACAGTAAGATGGCACAACGGATAGTACCAGAAATTGAAAAAGATTCTA</canonical>
            <polymorphic>TTAAGGTTATTTTTAAGTTATTCAAACTGCTTGCTTTTTCACAAACCAAAATGATGACATATGAGTTAGAAACTTTTTGAAAAAATTCACAGTGTTTGGGATGACTGTGGGCAACTTTACCAATAAATTCACGGTGTCCAATACAAAACAAGGAGCCAAATCAAGATTTCTCAGACTCACATGGTAGAACCTATGTGTGGGACAGCTGCCGCCTCCAGAGGGAACAAGATAAACTACTAGCACTTTTCACTAAATTAGCATGAAAACATACATGAATTAAAAGGAGTGTCCGTCTGACGCCACCACCACCGTCAGAGCATCTAACGCCTCCGGCACGACCACATCTACCAAGTCGGGGGGCTGTTTTCCACCAATTCCTTTTCCCATCCACTTTTCCAAGCACCAATTCCTGGTCGCTTTTCAATTTGAAAACATTTATTTTTCATTTCTTTCCGTTCAAGGTGAAATATTTTCGAATCTTGCTGTTATCCCCCGACTAYTACCTACTGTCATTGTTCCAGTCACAAACCCAAAAAAGAAGGAAAAAACCTCTGTCAAACGTTTTTTTTGGTGGAAGAAATGTGAAAGCGTTCAAAACACCATTAGTAAATAATAGTTAGAAAAAGGAGAAGAAAATGACAATAGCAAGGAAGGGGAAAGAAAAGAAAAATAGGAAATAAATAAGTAAAGGAGAAAAGAATGAAGAAATCAAAAATAGTGAAGTTTGGAGAAATAAGGAGAAGAGAGACATGAAAAGAAGAAGCAGTTTATGAAATTACTGTTATACGATTAGCATAGGTTTTCTGGCTGGCGTAGTATTACACCTGTCTAGAAAAATAACTAAAACAATTTTTTTTTCTGATTTTGGCAAAACATTTTTTGCTTTATTGCAGATATTTTTAAAGGAAAACTGCCACGTTTTATCAGGACTACAAATTAATTTTCCTTTGAAACAGTAAGATGGCACAACGGATAGTACCAGAAATTGAAAAAGATTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGACCACATCTACCAAGTC</pcr_primer_p1>
		<pcr_primer_p2>CACATTTCTTCCACCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGACCACATCTACCAAGTCGGGGGGCTGTTTTCCACCAATTCCTTTTCCCATCCACTTTTCCAAGCACCAATTCCTGGTCGCTTTTCAATTTGAAAACATTTATTTTTCATTTCTTTCCGTTCAAGGTGAAATATTTTCGAATCTTGCTGTTATCCCCCGACTACTACCTACTGTCATTGTTCCAGTCACAAACCCAAAAAAGAAGGAAAAAACCTCTGTCAAACGTTTTTTTTGGTGGAAGAAATGTG</canonical_amplicon>
		<polymorphic_amplicon>ACGACCACATCTACCAAGTCGGGGGGCTGTTTTCCACCAATTCCTTTTCCCATCCACTTTTCCAAGCACCAATTCCTGGTCGCTTTTCAATTTGAAAACATTTATTTTTCATTTCTTTCCGTTCAAGGTGAAATATTTTCGAATCTTGCTGTTATCCCCCGACTAYTACCTACTGTCATTGTTCCAGTCACAAACCCAAAAAAGAAGGAAAAAACCTCTGTCAAACGTTTTTTTTGGTGGAAGAAATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33325</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>58227</contig_pos>
        <strand>+</strand>
        <context>TCCCAATGTA[A/C]TTTTTTTATG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCGCAGTCATGAAGATTTTTTTCTGCTGCTCTCTTTTCTCCCAATGTA</left_flank>
        <right_flank>TTTTTTTATGTTGATTATGTTGTCTTCCTTTCCAAACGAAACTTTGCAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTGATTTCTGGCCTCCTTTAAAATTATGAAAAACTCCAATAATAGCAAACCGAAACTTTGAAATACTGAAAAATTGGAAAATGTTTGAAAATAGTGTAATTTCTCAACAATTCGAAATTCCGGTTTTCGAAATTTGGAGCCAGTCCGAAAACTGAAAGTCCGACACTTTGAAAAAGTTAAAAATCTGACCATTTTTTTAATTCTGTATCTTTAAACTATTCGAAATTTTGACTTCTAAAAACTCGGAGCAGTTCGAATCTTCAAAAATGACAAAATTAAAATTTTAAAAGTTTCATTCCGCATACTCCATAAAGCAAATCTGTTTTTTGAAGTTTCTGCAGAAATTGTTCTTCAATGTTTTTGAAAACGCAATATTCAAAACTTCAAGATGTTTTGAAATAAATGATTTTCATAATTTCCCAACTAAAATATGATAATTTCCAATTTTCGCAGTCATGAAGATTTTTTTCTGCTGCTCTCTTTTCTCCCAATGTATTTTTTTTATGTTGATTATGTTGTCTTCCTTTCCAAACGAAACTTTGCAACGATGACGTCCAATTTTTTTGAGTGCGCTCCACTTTCCAATTTATTGTCGTATCGTCAGAATGCTTGAAACTCTTACCTTGAAGATCTCTAGGTCCCACGCCCTGCGCTCTTAAAACTATACGAACACTTGAGACACCAAGATGGATAGCACTAATGCCGAGGTTTCGTATTTTCTAGAAAATCACATTAGTCATTCATTTTGACATCACAGTCTTCTCGGGAAAAAAAACGACAGGTGAAAATTGAGACGGAGTGATGTGATCTTGTCAATACCGTCTGAAAATTGTTATTCAAAAATGGCAAAAATTCAGAGAACATAGGGGAACACAACAACGAGTTCAGAAATTCGGAACATGTTATTTCCATTATACAGGTGATCTATGTTAGTGGAGCATTTGATCTCTTCCATGCAGGACATTTATCGTTTTTGGAAGCGGCAAAAGAGTTGGG</canonical>
            <polymorphic>TTTTTTGATTTCTGGCCTCCTTTAAAATTATGAAAAACTCCAATAATAGCAAACCGAAACTTTGAAATACTGAAAAATTGGAAAATGTTTGAAAATAGTGTAATTTCTCAACAATTCGAAATTCCGGTTTTCGAAATTTGGAGCCAGTCCGAAAACTGAAAGTCCGACACTTTGAAAAAGTTAAAAATCTGACCATTTTTTTAATTCTGTATCTTTAAACTATTCGAAATTTTGACTTCTAAAAACTCGGAGCAGTTCGAATCTTCAAAAATGACAAAATTAAAATTTTAAAAGTTTCATTCCGCATACTCCATAAAGCAAATCTGTTTTTTGAAGTTTCTGCAGAAATTGTTCTTCAATGTTTTTGAAAACGCAATATTCAAAACTTCAAGATGTTTTGAAATAAATGATTTTCATAATTTCCCAACTAAAATATGATAATTTCCAATTTTCGCAGTCATGAAGATTTTTTTCTGCTGCTCTCTTTTCTCCCAATGTAMTTTTTTTATGTTGATTATGTTGTCTTCCTTTCCAAACGAAACTTTGCAACGATGACGTCCAATTTTTTTGAGTGCGCTCCACTTTCCAATTTATTGTCGTATCGTCAGAATGCTTGAAACTCTTACCTTGAAGATCTCTAGGTCCCACGCCCTGCGCTCTTAAAACTATACGAACACTTGAGACACCAAGATGGATAGCACTAATGCCGAGGTTTCGTATTTTCTAGAAAATCACATTAGTCATTCATTTTGACATCACAGTCTTCTCGGGAAAAAAAACGACAGGTGAAAATTGAGACGGAGTGATGTGATCTTGTCAATACCGTCTGAAAATTGTTATTCAAAAATGGCAAAAATTCAGAGAACATAGGGGAACACAACAACGAGTTCAGAAATTCGGAACATGTTATTTCCATTATACAGGTGATCTATGTTAGTGGAGCATTTGATCTCTTCCATGCAGGACATTTATCGTTTTTGGAAGCGGCAAAAGAGTTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAAGATGTTTTGAAATAAATGA</pcr_primer_p1>
		<pcr_primer_p2>GATCTTCAAGGTAAGAGTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCAAGATGTTTTGAAATAAATGATTTTCATAATTTCCCAACTAAAATATGATAATTTCCAATTTTCGCAGTCATGAAGATTTTTTTCTGCTGCTCTCTTTTCTCCCAATGTATTTTTTTTATGTTGATTATGTTGTCTTCCTTTCCAAACGAAACTTTGCAACGATGACGTCCAATTTTTTTGAGTGCGCTCCACTTTCCAATTTATTGTCGTATCGTCAGAATGCTTGAAACTCTTACCTTGAAGATC</canonical_amplicon>
		<polymorphic_amplicon>TTCAAGATGTTTTGAAATAAATGATTTTCATAATTTCCCAACTAAAATATGATAATTTCCAATTTTCGCAGTCATGAAGATTTTTTTCTGCTGCTCTCTTTTCTCCCAATGTAMTTTTTTTATGTTGATTATGTTGTCTTCCTTTCCAAACGAAACTTTGCAACGATGACGTCCAATTTTTTTGAGTGCGCTCCACTTTCCAATTTATTGTCGTATCGTCAGAATGCTTGAAACTCTTACCTTGAAGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33326</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>106205</contig_pos>
        <strand>+</strand>
        <context>ACGCCATCTA[A/G]GAATCCATCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCCTCACAACTACTCATCTACCAAAACCAACCCTCTACGACGCCATCTA</left_flank>
        <right_flank>GAATCCATCGCATAAGGCGCCTTCTGGGCTTCAGGCGATTTTTGTGTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTTCTCTCCTGTTTCTCCTTCAACTTCTTCAACTCCTCTTCCTCTTTCTCACGTTCGGCGCGACGGCGCTCTTCGTAATCTTGAAGTTTTGCGTGTTGATCTTCTTCATGACGGCGTTTGGCAGCCTGTAAAGATTTTAGTGGTTTTCAAGGCCAAGCGGTACATCAATTTACCGCCATAGCGCGCTCTCCCTCGGTCAAACCTTCTTCGTCTTCGGTAAACGACTTTGTCTTTGGTCTGCAAAACAAGAAATTATAGGATGAACTAGAAAATTGAGTTGATTACCGATCAGATCGAGTGGTTCCAGTTTCAGAAGGAGCATAGTCAGCCTCGACTTCTTCTTCCTCTTCGACCTCCTCAACTTCCTCGTCGGTGCTGAAAGGTTACGGTACAAAAAAAAACATGATATAAGTTCCTATGACAGTTAGTATCCACTATTAACTACCTCCCTCACAACTACTCATCTACCAAAACCAACCCTCTACGACGCCATCTAGGAATCCATCGCATAAGGCGCCTTCTGGGCTTCAGGCGATTTTTGTGTTTTTCAAAGTCAACGCGCTTTAGATCAACTTGAAAATCTAGCCAATGTCGTCTGGGTTGTTGCTTCTTCACAATTTTTGTTGCATTCAACCGGATTGGTTTCATTTCTCTTGCTGGCGTTGGTGATCGCACGCGTGGAGCTCGACGGTTGATGAATCTCGTTGGTGGACTGGTGCATCGCTCTTTGTTAAACTGTGACTTTAACGCTCGAATTGCGTTGAATGGCGATAGAGCGCGGATGATAGCCTTGGGGCGTGGAATGTGCATTTGGGAGGTGAATCGTTCGATCAGTATTTTATCTGTTTCTGACAATTCCGCGAAAAGGTGTTGTTGGTGTTGTTTTGACTCGTAGTTTTTTGCGGCTCCTCTAGGCTTCGCGGACAGCGCTAGGGAGCCATGCAAGTTTAAATGCTTCGAAGATGAAGCAGGCGGCGGTCTCCTCCTTGGTAGGGGT</canonical>
            <polymorphic>TTTCTTCTCTCCTGTTTCTCCTTCAACTTCTTCAACTCCTCTTCCTCTTTCTCACGTTCGGCGCGACGGCGCTCTTCGTAATCTTGAAGTTTTGCGTGTTGATCTTCTTCATGACGGCGTTTGGCAGCCTGTAAAGATTTTAGTGGTTTTCAAGGCCAAGCGGTACATCAATTTACCGCCATAGCGCGCTCTCCCTCGGTCAAACCTTCTTCGTCTTCGGTAAACGACTTTGTCTTTGGTCTGCAAAACAAGAAATTATAGGATGAACTAGAAAATTGAGTTGATTACCGATCAGATCGAGTGGTTCCAGTTTCAGAAGGAGCATAGTCAGCCTCGACTTCTTCTTCCTCTTCGACCTCCTCAACTTCCTCGTCGGTGCTGAAAGGTTACGGTACAAAAAAAAACATGATATAAGTTCCTATGACAGTTAGTATCCACTATTAACTACCTCCCTCACAACTACTCATCTACCAAAACCAACCCTCTACGACGCCATCTARGAATCCATCGCATAAGGCGCCTTCTGGGCTTCAGGCGATTTTTGTGTTTTTCAAAGTCAACGCGCTTTAGATCAACTTGAAAATCTAGCCAATGTCGTCTGGGTTGTTGCTTCTTCACAATTTTTGTTGCATTCAACCGGATTGGTTTCATTTCTCTTGCTGGCGTTGGTGATCGCACGCGTGGAGCTCGACGGTTGATGAATCTCGTTGGTGGACTGGTGCATCGCTCTTTGTTAAACTGTGACTTTAACGCTCGAATTGCGTTGAATGGCGATAGAGCGCGGATGATAGCCTTGGGGCGTGGAATGTGCATTTGGGAGGTGAATCGTTCGATCAGTATTTTATCTGTTTCTGACAATTCCGCGAAAAGGTGTTGTTGGTGTTGTTTTGACTCGTAGTTTTTTGCGGCTCCTCTAGGCTTCGCGGACAGCGCTAGGGAGCCATGCAAGTTTAAATGCTTCGAAGATGAAGCAGGCGGCGGTCTCCTCCTTGGTAGGGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>329 268 229 88 67 19</canonical_bands>
                <polymorphic_bands>329 317 268 67 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTCAGAAGGAGCATAGTCAG</pcr_primer_p1>
		<pcr_primer_p2>TGACTTTGAAAAACACAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTCAGAAGGAGCATAGTCAGCCTCGACTTCTTCTTCCTCTTCGACCTCCTCAACTTCCTCGTCGGTGCTGAAAGGTTACGGTACAAAAAAAAACATGATATAAGTTCCTATGACAGTTAGTATCCACTATTAACTACCTCCCTCACAACTACTCATCTACCAAAACCAACCCTCTACGACGCCATCTAGGAATCCATCGCATAAGGCGCCTTCTGGGCTTCAGGCGATTTTTGTGTTTTTCAAAGTCA</canonical_amplicon>
		<polymorphic_amplicon>GTTTCAGAAGGAGCATAGTCAGCCTCGACTTCTTCTTCCTCTTCGACCTCCTCAACTTCCTCGTCGGTGCTGAAAGGTTACGGTACAAAAAAAAACATGATATAAGTTCCTATGACAGTTAGTATCCACTATTAACTACCTCCCTCACAACTACTCATCTACCAAAACCAACCCTCTACGACGCCATCTARGAATCCATCGCATAAGGCGCCTTCTGGGCTTCAGGCGATTTTTGTGTTTTTCAAAGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33327</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>152530</contig_pos>
        <strand>+</strand>
        <context>ACTTTGCTGT[A/G]AAAGGTRGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGAACATCTGAAATAAAGACCTGATTAGTTTTGTGAATTACTTTGCTGT</left_flank>
        <right_flank>AAAGGTAGTGAGTTCAAAATATTAGAATGTATCATAATTTTTAGAACCGT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTCATTCCGACTCTGAGCGCACCTCTTGGTCAAATTTCTACTATATTCCACCTTATACTTCAACATTTCTGTCAAGGGGGTCGTAATCTTACAGTAGGATTTTAAGAAAATTCCTCACCCGCTTCCGTGGAACTCATATGACTTCTCAATCATGTCCCATGCTTTTTTTTGACATTTCAATCAAATCCACCATACAATTTTGATCTTTACTTGAGAAATCCATTAGTAGGCTGTCACATTCAATATGATTAACTTTTTTCAATAGAAAGCACAGGGTCGCAGTCGGAATAGAAAAAGGGGCGGAGCCATGGGCAAAAGAGCTCGATCCGAGCAAAGTGGGCGGAGCTCAGAATGAAAGTATGTAAACGTCTAGGCTGTTCACTATATTTAATATAAGTCTCAGTGCGCCTGAGATTTTTTTGGGAGCCCCCCCCCCCTCCCATTTCCCTGAACATCTGAAATAAAGACCTGATTAGTTTTGTGAATTACTTTGCTGTGAAAGGTAGTGAGTTCAAAATATTAGAATGTATCATAATTTTTAGAACCGTGAGAATCTCTATTAATGAATGAATCAAAATTTTTAAAATTGTTTAAGAGTTGAATCTTATGTTACCGTTCATCAGATTTTCTTGAAAGTTGTGGTCTAGGTGGGTTTCTGTTTACGGTAGCAGCACTAGATTCAGCAACAATCATGTAATTCATCAGTTGCTTATTGTGTCATTTCTGAAACAAAAAACTCCTGACTATACAATTTTTTACTCCAGATTCTTAAGAAGCTGAGGGTTCGGTTGTCACCTTTCAATCCAAATGAGCTTCCCGAATAAAAATAACAGAGTTTTTGTTTTATTCGGGAAGGCCGTTTCCGGAGCCGTTGACATGGAAACTGAATCCATGGCGGCCACGGGGACTCAAAATTTTCCCTCTTATTTGATTTTTCGTTCAACTAAAAATAAGTAGTATCAGATGTTTAATATTCAGGTGCCCCAATCTGGACTAGT</canonical>
            <polymorphic>TATTCATTCCGACTCTGAGCGCACCTCTTGGTCAAATTTCTACTATATTCCACCTTATACTTCAACATTTCTGTCAAGGGGGTCGTAATCTTACAGTAGGATTTTAAGAAAATTCCTCACCCGCTTCCGTGGAACTCATATGACTTCTCAATCATGTCCCATGCTTTTTTTTGACATTTCAATCAAATCCACCATACAATTTTGATCTTTACTTGAGAAATCCATTAGTAGGCTGTCACATTCAATATGATTAACTTTTTTCAATAGAAAGCACAGGGTCGCAGTCGGAATAGAAAAAGGGGCGGAGCCATGGGCAAAAGAGCTCGATCCGAGCAAAGTGGGCGGAGCTCAGAATGAAAGTATGTAAACGTCTAGGCTGTTCACTATATTTAATATAAGTCTCAGTGCGCCTGAGATTTTTTTGGGAGCCCCCCCCCCCTCCCATTTCCCTGAACATCTGAAATAAAGACCTGATTAGTTTTGTGAATTACTTTGCTGTRAAAGGTAGTGAGTTCAAAATATTAGAATGTATCATAATTTTTAGAACCGTGAGAATCTCTATTAATGAATGAATCAAAATTTTTAAAATTGTTTAAGAGTTGAATCTTATGTTACCGTTCATCAGATTTTCTTGAAAGTTGTGGTCTAGGTGGGTTTCTGTTTACGGTAGCAGCACTAGATTCAGCAACAATCATGTAATTCATCAGTTGCTTATTGTGTCATTTCTGAAACAAAAAACTCCTGACTATACAATTTTTTACTCCAGATTCTTAAGAAGCTGAGGGTTCGGTTGTCACCTTTCAATCCAAATGAGCTTCCCGAATAAAAATAACAGAGTTTTTGTTTTATTCGGGAAGGCCGTTTCCGGAGCCGTTGACATGGAAACTGAATCCATGGCGGCCACGGGGACTCAAAATTTTCCCTCTTATTTGATTTTTCGTTCAACTAAAAATAAGTAGTATCAGATGTTTAATATTCAGGTGCCCCAATCTGGACTAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>107 92 80 78 77 67 67 60 47 44 43 41 35 29 24 23 23 17 15 12 10 9</canonical_bands>
                <polymorphic_bands>107 92 80 78 77 67 67 60 47 44 43 41 35 29 25 24 23 23 17 12 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCTGAACATCTGAAATAAAGA</pcr_primer_p1>
		<pcr_primer_p2>ACATGATTGTTGCTGAATCTAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCCTGAACATCTGAAATAAAGACCTGATTAGTTTTGTGAATTACTTTGCTGTGAAAGGTAGTGAGTTCAAAATATTAGAATGTATCATAATTTTTAGAACCGTGAGAATCTCTATTAATGAATGAATCAAAATTTTTAAAATTGTTTAAGAGTTGAATCTTATGTTACCGTTCATCAGATTTTCTTGAAAGTTGTGGTCTAGGTGGGTTTCTGTTTACGGTAGCAGCACTAGATTCAGCAACAATCATGT</canonical_amplicon>
		<polymorphic_amplicon>CCCTGAACATCTGAAATAAAGACCTGATTAGTTTTGTGAATTACTTTGCTGTRAAAGGTAGTGAGTTCAAAATATTAGAATGTATCATAATTTTTAGAACCGTGAGAATCTCTATTAATGAATGAATCAAAATTTTTAAAATTGTTTAAGAGTTGAATCTTATGTTACCGTTCATCAGATTTTCTTGAAAGTTGTGGTCTAGGTGGGTTTCTGTTTACGGTAGCAGCACTAGATTCAGCAACAATCATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33328</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>152537</contig_pos>
        <strand>+</strand>
        <context>TGTRAAAGGT[A/G]GTGAGTTCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGAAATAAAGACCTGATTAGTTTTGTGAATTACTTTGCTGTGAAAGGT</left_flank>
        <right_flank>GTGAGTTCAAAATATTAGAATGTATCATAATTTTTAGAACCGTGAGAATC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCGACTCTGAGCGCACCTCTTGGTCAAATTTCTACTATATTCCACCTTATACTTCAACATTTCTGTCAAGGGGGTCGTAATCTTACAGTAGGATTTTAAGAAAATTCCTCACCCGCTTCCGTGGAACTCATATGACTTCTCAATCATGTCCCATGCTTTTTTTTGACATTTCAATCAAATCCACCATACAATTTTGATCTTTACTTGAGAAATCCATTAGTAGGCTGTCACATTCAATATGATTAACTTTTTTCAATAGAAAGCACAGGGTCGCAGTCGGAATAGAAAAAGGGGCGGAGCCATGGGCAAAAGAGCTCGATCCGAGCAAAGTGGGCGGAGCTCAGAATGAAAGTATGTAAACGTCTAGGCTGTTCACTATATTTAATATAAGTCTCAGTGCGCCTGAGATTTTTTTGGGAGCCCCCCCCCCCTCCCATTTCCCTGAACATCTGAAATAAAGACCTGATTAGTTTTGTGAATTACTTTGCTGTGAAAGGTAGTGAGTTCAAAATATTAGAATGTATCATAATTTTTAGAACCGTGAGAATCTCTATTAATGAATGAATCAAAATTTTTAAAATTGTTTAAGAGTTGAATCTTATGTTACCGTTCATCAGATTTTCTTGAAAGTTGTGGTCTAGGTGGGTTTCTGTTTACGGTAGCAGCACTAGATTCAGCAACAATCATGTAATTCATCAGTTGCTTATTGTGTCATTTCTGAAACAAAAAACTCCTGACTATACAATTTTTTACTCCAGATTCTTAAGAAGCTGAGGGTTCGGTTGTCACCTTTCAATCCAAATGAGCTTCCCGAATAAAAATAACAGAGTTTTTGTTTTATTCGGGAAGGCCGTTTCCGGAGCCGTTGACATGGAAACTGAATCCATGGCGGCCACGGGGACTCAAAATTTTCCCTCTTATTTGATTTTTCGTTCAACTAAAAATAAGTAGTATCAGATGTTTAATATTCAGGTGCCCCAATCTGGACTAGTCTAAATG</canonical>
            <polymorphic>TCCGACTCTGAGCGCACCTCTTGGTCAAATTTCTACTATATTCCACCTTATACTTCAACATTTCTGTCAAGGGGGTCGTAATCTTACAGTAGGATTTTAAGAAAATTCCTCACCCGCTTCCGTGGAACTCATATGACTTCTCAATCATGTCCCATGCTTTTTTTTGACATTTCAATCAAATCCACCATACAATTTTGATCTTTACTTGAGAAATCCATTAGTAGGCTGTCACATTCAATATGATTAACTTTTTTCAATAGAAAGCACAGGGTCGCAGTCGGAATAGAAAAAGGGGCGGAGCCATGGGCAAAAGAGCTCGATCCGAGCAAAGTGGGCGGAGCTCAGAATGAAAGTATGTAAACGTCTAGGCTGTTCACTATATTTAATATAAGTCTCAGTGCGCCTGAGATTTTTTTGGGAGCCCCCCCCCCCTCCCATTTCCCTGAACATCTGAAATAAAGACCTGATTAGTTTTGTGAATTACTTTGCTGTGAAAGGTRGTGAGTTCAAAATATTAGAATGTATCATAATTTTTAGAACCGTGAGAATCTCTATTAATGAATGAATCAAAATTTTTAAAATTGTTTAAGAGTTGAATCTTATGTTACCGTTCATCAGATTTTCTTGAAAGTTGTGGTCTAGGTGGGTTTCTGTTTACGGTAGCAGCACTAGATTCAGCAACAATCATGTAATTCATCAGTTGCTTATTGTGTCATTTCTGAAACAAAAAACTCCTGACTATACAATTTTTTACTCCAGATTCTTAAGAAGCTGAGGGTTCGGTTGTCACCTTTCAATCCAAATGAGCTTCCCGAATAAAAATAACAGAGTTTTTGTTTTATTCGGGAAGGCCGTTTCCGGAGCCGTTGACATGGAAACTGAATCCATGGCGGCCACGGGGACTCAAAATTTTCCCTCTTATTTGATTTTTCGTTCAACTAAAAATAAGTAGTATCAGATGTTTAATATTCAGGTGCCCCAATCTGGACTAGTCTAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAACATCTGAAATAAAGACCTG</pcr_primer_p1>
		<pcr_primer_p2>ATTACATGATTGTTGCTGAATCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAACATCTGAAATAAAGACCTGATTAGTTTTGTGAATTACTTTGCTGTGAAAGGTAGTGAGTTCAAAATATTAGAATGTATCATAATTTTTAGAACCGTGAGAATCTCTATTAATGAATGAATCAAAATTTTTAAAATTGTTTAAGAGTTGAATCTTATGTTACCGTTCATCAGATTTTCTTGAAAGTTGTGGTCTAGGTGGGTTTCTGTTTACGGTAGCAGCACTAGATTCAGCAACAATCATGTAAT</canonical_amplicon>
		<polymorphic_amplicon>TGAACATCTGAAATAAAGACCTGATTAGTTTTGTGAATTACTTTGCTGTGAAAGGTRGTGAGTTCAAAATATTAGAATGTATCATAATTTTTAGAACCGTGAGAATCTCTATTAATGAATGAATCAAAATTTTTAAAATTGTTTAAGAGTTGAATCTTATGTTACCGTTCATCAGATTTTCTTGAAAGTTGTGGTCTAGGTGGGTTTCTGTTTACGGTAGCAGCACTAGATTCAGCAACAATCATGTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33329</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>152682</contig_pos>
        <strand>+</strand>
        <context>TGGTCTAGGT[G/T]GGTTTCTGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAATCTTATGTTACCGTTCATCAGATTTTCTTGAAAGTTGTGGTCTAGGT</left_flank>
        <right_flank>GGTTTCTGTTTACGGTAGCAGCACTAGATTCAGCAACAATCATGTAATTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGTCCCATGCTTTTTTTTGACATTTCAATCAAATCCACCATACAATTTTGATCTTTACTTGAGAAATCCATTAGTAGGCTGTCACATTCAATATGATTAACTTTTTTCAATAGAAAGCACAGGGTCGCAGTCGGAATAGAAAAAGGGGCGGAGCCATGGGCAAAAGAGCTCGATCCGAGCAAAGTGGGCGGAGCTCAGAATGAAAGTATGTAAACGTCTAGGCTGTTCACTATATTTAATATAAGTCTCAGTGCGCCTGAGATTTTTTTGGGAGCCCCCCCCCCCTCCCATTTCCCTGAACATCTGAAATAAAGACCTGATTAGTTTTGTGAATTACTTTGCTGTGAAAGGTAGTGAGTTCAAAATATTAGAATGTATCATAATTTTTAGAACCGTGAGAATCTCTATTAATGAATGAATCAAAATTTTTAAAATTGTTTAAGAGTTGAATCTTATGTTACCGTTCATCAGATTTTCTTGAAAGTTGTGGTCTAGGTGGGTTTCTGTTTACGGTAGCAGCACTAGATTCAGCAACAATCATGTAATTCATCAGTTGCTTATTGTGTCATTTCTGAAACAAAAAACTCCTGACTATACAATTTTTTACTCCAGATTCTTAAGAAGCTGAGGGTTCGGTTGTCACCTTTCAATCCAAATGAGCTTCCCGAATAAAAATAACAGAGTTTTTGTTTTATTCGGGAAGGCCGTTTCCGGAGCCGTTGACATGGAAACTGAATCCATGGCGGCCACGGGGACTCAAAATTTTCCCTCTTATTTGATTTTTCGTTCAACTAAAAATAAGTAGTATCAGATGTTTAATATTCAGGTGCCCCAATCTGGACTAGTCTAAATGAATATTCCAGGGTAGCTTCTAGCCATTTTCAGTATCTCTGATTTGTAAATATCTCATGTTTTATAATATACTGTTTGCATTCAATTTCCTATTTGTATTCTTTTTCAGAGCATCCAATTCAAATTTGCAGCCTCATTCTCTGAAA</canonical>
            <polymorphic>CATGTCCCATGCTTTTTTTTGACATTTCAATCAAATCCACCATACAATTTTGATCTTTACTTGAGAAATCCATTAGTAGGCTGTCACATTCAATATGATTAACTTTTTTCAATAGAAAGCACAGGGTCGCAGTCGGAATAGAAAAAGGGGCGGAGCCATGGGCAAAAGAGCTCGATCCGAGCAAAGTGGGCGGAGCTCAGAATGAAAGTATGTAAACGTCTAGGCTGTTCACTATATTTAATATAAGTCTCAGTGCGCCTGAGATTTTTTTGGGAGCCCCCCCCCCCTCCCATTTCCCTGAACATCTGAAATAAAGACCTGATTAGTTTTGTGAATTACTTTGCTGTGAAAGGTAGTGAGTTCAAAATATTAGAATGTATCATAATTTTTAGAACCGTGAGAATCTCTATTAATGAATGAATCAAAATTTTTAAAATTGTTTAAGAGTTGAATCTTATGTTACCGTTCATCAGATTTTCTTGAAAGTTGTGGTCTAGGTKGGTTTCTGTTTACGGTAGCAGCACTAGATTCAGCAACAATCATGTAATTCATCAGTTGCTTATTGTGTCATTTCTGAAACAAAAAACTCCTGACTATACAATTTTTTACTCCAGATTCTTAAGAAGCTGAGGGTTCGGTTGTCACCTTTCAATCCAAATGAGCTTCCCGAATAAAAATAACAGAGTTTTTGTTTTATTCGGGAAGGCCGTTTCCGGAGCCGTTGACATGGAAACTGAATCCATGGCGGCCACGGGGACTCAAAATTTTCCCTCTTATTTGATTTTTCGTTCAACTAAAAATAAGTAGTATCAGATGTTTAATATTCAGGTGCCCCAATCTGGACTAGTCTAAATGAATATTCCAGGGTAGCTTCTAGCCATTTTCAGTATCTCTGATTTGTAAATATCTCATGTTTTATAATATACTGTTTGCATTCAATTTCCTATTTGTATTCTTTTTCAGAGCATCCAATTCAAATTTGCAGCCTCATTCTCTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>169 107 92 80 78 77 67 47 44 43 41 39 35 24 23 15 10 9</canonical_bands>
                <polymorphic_bands>169 107 92 80 78 77 67 47 44 43 41 39 35 32 24 15 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTTTGTGAATTACTTTGCTGT</pcr_primer_p1>
		<pcr_primer_p2>AAATGACACAATAAGCAACTGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGTTTTGTGAATTACTTTGCTGTGAAAGGTAGTGAGTTCAAAATATTAGAATGTATCATAATTTTTAGAACCGTGAGAATCTCTATTAATGAATGAATCAAAATTTTTAAAATTGTTTAAGAGTTGAATCTTATGTTACCGTTCATCAGATTTTCTTGAAAGTTGTGGTCTAGGTGGGTTTCTGTTTACGGTAGCAGCACTAGATTCAGCAACAATCATGTAATTCATCAGTTGCTTATTGTGTCATTT</canonical_amplicon>
		<polymorphic_amplicon>AGTTTTGTGAATTACTTTGCTGTGAAAGGTAGTGAGTTCAAAATATTAGAATGTATCATAATTTTTAGAACCGTGAGAATCTCTATTAATGAATGAATCAAAATTTTTAAAATTGTTTAAGAGTTGAATCTTATGTTACCGTTCATCAGATTTTCTTGAAAGTTGTGGTCTAGGTKGGTTTCTGTTTACGGTAGCAGCACTAGATTCAGCAACAATCATGTAATTCATCAGTTGCTTATTGTGTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33330</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>152871</contig_pos>
        <strand>+</strand>
        <context>AACAGAGTTT[C/T]YGTTTTATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGTCACCTTTCAATCCAAATGAGCTTCCCGAATAAAAATAACAGAGTTT</left_flank>
        <right_flank>TGTTTTATTCGGGAAGGCCGTTTCCGGAGCCGTTGACATGGAAACTGAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGGAGCTCAGAATGAAAGTATGTAAACGTCTAGGCTGTTCACTATATTTAATATAAGTCTCAGTGCGCCTGAGATTTTTTTGGGAGCCCCCCCCCCCTCCCATTTCCCTGAACATCTGAAATAAAGACCTGATTAGTTTTGTGAATTACTTTGCTGTGAAAGGTAGTGAGTTCAAAATATTAGAATGTATCATAATTTTTAGAACCGTGAGAATCTCTATTAATGAATGAATCAAAATTTTTAAAATTGTTTAAGAGTTGAATCTTATGTTACCGTTCATCAGATTTTCTTGAAAGTTGTGGTCTAGGTGGGTTTCTGTTTACGGTAGCAGCACTAGATTCAGCAACAATCATGTAATTCATCAGTTGCTTATTGTGTCATTTCTGAAACAAAAAACTCCTGACTATACAATTTTTTACTCCAGATTCTTAAGAAGCTGAGGGTTCGGTTGTCACCTTTCAATCCAAATGAGCTTCCCGAATAAAAATAACAGAGTTTTTGTTTTATTCGGGAAGGCCGTTTCCGGAGCCGTTGACATGGAAACTGAATCCATGGCGGCCACGGGGACTCAAAATTTTCCCTCTTATTTGATTTTTCGTTCAACTAAAAATAAGTAGTATCAGATGTTTAATATTCAGGTGCCCCAATCTGGACTAGTCTAAATGAATATTCCAGGGTAGCTTCTAGCCATTTTCAGTATCTCTGATTTGTAAATATCTCATGTTTTATAATATACTGTTTGCATTCAATTTCCTATTTGTATTCTTTTTCAGAGCATCCAATTCAAATTTGCAGCCTCATTCTCTGAAACTGATTTTTCTTTCTTTCTCATTAGCATTATCCTTTGAAACTCAAGAAGTCCTTCTTTCTTTTTGCTGAAATTTGGCACGTTTATGTTTTCCTCAGCCACACCCAAATCCTGATCCTTCCTTTCTCTCGGAACCAAATCCGGTGATGTCGACAGCTCTCTTGCACTCATCGTCTCTCATTAGTGCACAA</canonical>
            <polymorphic>GCGGAGCTCAGAATGAAAGTATGTAAACGTCTAGGCTGTTCACTATATTTAATATAAGTCTCAGTGCGCCTGAGATTTTTTTGGGAGCCCCCCCCCCCTCCCATTTCCCTGAACATCTGAAATAAAGACCTGATTAGTTTTGTGAATTACTTTGCTGTGAAAGGTAGTGAGTTCAAAATATTAGAATGTATCATAATTTTTAGAACCGTGAGAATCTCTATTAATGAATGAATCAAAATTTTTAAAATTGTTTAAGAGTTGAATCTTATGTTACCGTTCATCAGATTTTCTTGAAAGTTGTGGTCTAGGTGGGTTTCTGTTTACGGTAGCAGCACTAGATTCAGCAACAATCATGTAATTCATCAGTTGCTTATTGTGTCATTTCTGAAACAAAAAACTCCTGACTATACAATTTTTTACTCCAGATTCTTAAGAAGCTGAGGGTTCGGTTGTCACCTTTCAATCCAAATGAGCTTCCCGAATAAAAATAACAGAGTTTYTGTTTTATTCGGGAAGGCCGTTTCCGGAGCCGTTGACATGGAAACTGAATCCATGGCGGCCACGGGGACTCAAAATTTTCCCTCTTATTTGATTTTTCGTTCAACTAAAAATAAGTAGTATCAGATGTTTAATATTCAGGTGCCCCAATCTGGACTAGTCTAAATGAATATTCCAGGGTAGCTTCTAGCCATTTTCAGTATCTCTGATTTGTAAATATCTCATGTTTTATAATATACTGTTTGCATTCAATTTCCTATTTGTATTCTTTTTCAGAGCATCCAATTCAAATTTGCAGCCTCATTCTCTGAAACTGATTTTTCTTTCTTTCTCATTAGCATTATCCTTTGAAACTCAAGAAGTCCTTCTTTCTTTTTGCTGAAATTTGGCACGTTTATGTTTTCCTCAGCCACACCCAAATCCTGATCCTTCCTTTCTCTCGGAACCAAATCCGGTGATGTCGACAGCTCTCTTGCACTCATCGTCTCTCATTAGTGCACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCATCAGTTGCTTATTGTGT</pcr_primer_p1>
		<pcr_primer_p2>TTGAACGAAAAATCAAATAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATTCATCAGTTGCTTATTGTGTCATTTCTGAAACAAAAAACTCCTGACTATACAATTTTTTACTCCAGATTCTTAAGAAGCTGAGGGTTCGGTTGTCACCTTTCAATCCAAATGAGCTTCCCGAATAAAAATAACAGAGTTTTTGTTTTATTCGGGAAGGCCGTTTCCGGAGCCGTTGACATGGAAACTGAATCCATGGCGGCCACGGGGACTCAAAATTTTCCCTCTTATTTGATTTTTCGTTCAA</canonical_amplicon>
		<polymorphic_amplicon>AATTCATCAGTTGCTTATTGTGTCATTTCTGAAACAAAAAACTCCTGACTATACAATTTTTTACTCCAGATTCTTAAGAAGCTGAGGGTTCGGTTGTCACCTTTCAATCCAAATGAGCTTCCCGAATAAAAATAACAGAGTTTYTGTTTTATTCGGGAAGGCCGTTTCCGGAGCCGTTGACATGGAAACTGAATCCATGGCGGCCACGGGGACTCAAAATTTTCCCTCTTATTTGATTTTTCGTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33331</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>152872</contig_pos>
        <strand>+</strand>
        <context>ACAGAGTTTY[C/T]GTTTTATTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTCACCTTTCAATCCAAATGAGCTTCCCGAATAAAAATAACAGAGTTTT</left_flank>
        <right_flank>GTTTTATTCGGGAAGGCCGTTTCCGGAGCCGTTGACATGGAAACTGAATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGAGCTCAGAATGAAAGTATGTAAACGTCTAGGCTGTTCACTATATTTAATATAAGTCTCAGTGCGCCTGAGATTTTTTTGGGAGCCCCCCCCCCCTCCCATTTCCCTGAACATCTGAAATAAAGACCTGATTAGTTTTGTGAATTACTTTGCTGTGAAAGGTAGTGAGTTCAAAATATTAGAATGTATCATAATTTTTAGAACCGTGAGAATCTCTATTAATGAATGAATCAAAATTTTTAAAATTGTTTAAGAGTTGAATCTTATGTTACCGTTCATCAGATTTTCTTGAAAGTTGTGGTCTAGGTGGGTTTCTGTTTACGGTAGCAGCACTAGATTCAGCAACAATCATGTAATTCATCAGTTGCTTATTGTGTCATTTCTGAAACAAAAAACTCCTGACTATACAATTTTTTACTCCAGATTCTTAAGAAGCTGAGGGTTCGGTTGTCACCTTTCAATCCAAATGAGCTTCCCGAATAAAAATAACAGAGTTTTTGTTTTATTCGGGAAGGCCGTTTCCGGAGCCGTTGACATGGAAACTGAATCCATGGCGGCCACGGGGACTCAAAATTTTCCCTCTTATTTGATTTTTCGTTCAACTAAAAATAAGTAGTATCAGATGTTTAATATTCAGGTGCCCCAATCTGGACTAGTCTAAATGAATATTCCAGGGTAGCTTCTAGCCATTTTCAGTATCTCTGATTTGTAAATATCTCATGTTTTATAATATACTGTTTGCATTCAATTTCCTATTTGTATTCTTTTTCAGAGCATCCAATTCAAATTTGCAGCCTCATTCTCTGAAACTGATTTTTCTTTCTTTCTCATTAGCATTATCCTTTGAAACTCAAGAAGTCCTTCTTTCTTTTTGCTGAAATTTGGCACGTTTATGTTTTCCTCAGCCACACCCAAATCCTGATCCTTCCTTTCTCTCGGAACCAAATCCGGTGATGTCGACAGCTCTCTTGCACTCATCGTCTCTCATTAGTGCACAAT</canonical>
            <polymorphic>CGGAGCTCAGAATGAAAGTATGTAAACGTCTAGGCTGTTCACTATATTTAATATAAGTCTCAGTGCGCCTGAGATTTTTTTGGGAGCCCCCCCCCCCTCCCATTTCCCTGAACATCTGAAATAAAGACCTGATTAGTTTTGTGAATTACTTTGCTGTGAAAGGTAGTGAGTTCAAAATATTAGAATGTATCATAATTTTTAGAACCGTGAGAATCTCTATTAATGAATGAATCAAAATTTTTAAAATTGTTTAAGAGTTGAATCTTATGTTACCGTTCATCAGATTTTCTTGAAAGTTGTGGTCTAGGTGGGTTTCTGTTTACGGTAGCAGCACTAGATTCAGCAACAATCATGTAATTCATCAGTTGCTTATTGTGTCATTTCTGAAACAAAAAACTCCTGACTATACAATTTTTTACTCCAGATTCTTAAGAAGCTGAGGGTTCGGTTGTCACCTTTCAATCCAAATGAGCTTCCCGAATAAAAATAACAGAGTTTTYGTTTTATTCGGGAAGGCCGTTTCCGGAGCCGTTGACATGGAAACTGAATCCATGGCGGCCACGGGGACTCAAAATTTTCCCTCTTATTTGATTTTTCGTTCAACTAAAAATAAGTAGTATCAGATGTTTAATATTCAGGTGCCCCAATCTGGACTAGTCTAAATGAATATTCCAGGGTAGCTTCTAGCCATTTTCAGTATCTCTGATTTGTAAATATCTCATGTTTTATAATATACTGTTTGCATTCAATTTCCTATTTGTATTCTTTTTCAGAGCATCCAATTCAAATTTGCAGCCTCATTCTCTGAAACTGATTTTTCTTTCTTTCTCATTAGCATTATCCTTTGAAACTCAAGAAGTCCTTCTTTCTTTTTGCTGAAATTTGGCACGTTTATGTTTTCCTCAGCCACACCCAAATCCTGATCCTTCCTTTCTCTCGGAACCAAATCCGGTGATGTCGACAGCTCTCTTGCACTCATCGTCTCTCATTAGTGCACAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCATCAGTTGCTTATTGTGT</pcr_primer_p1>
		<pcr_primer_p2>TTGAACGAAAAATCAAATAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATTCATCAGTTGCTTATTGTGTCATTTCTGAAACAAAAAACTCCTGACTATACAATTTTTTACTCCAGATTCTTAAGAAGCTGAGGGTTCGGTTGTCACCTTTCAATCCAAATGAGCTTCCCGAATAAAAATAACAGAGTTTTTGTTTTATTCGGGAAGGCCGTTTCCGGAGCCGTTGACATGGAAACTGAATCCATGGCGGCCACGGGGACTCAAAATTTTCCCTCTTATTTGATTTTTCGTTCAA</canonical_amplicon>
		<polymorphic_amplicon>AATTCATCAGTTGCTTATTGTGTCATTTCTGAAACAAAAAACTCCTGACTATACAATTTTTTACTCCAGATTCTTAAGAAGCTGAGGGTTCGGTTGTCACCTTTCAATCCAAATGAGCTTCCCGAATAAAAATAACAGAGTTTTYGTTTTATTCGGGAAGGCCGTTTCCGGAGCCGTTGACATGGAAACTGAATCCATGGCGGCCACGGGGACTCAAAATTTTCCCTCTTATTTGATTTTTCGTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33332</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>152911</contig_pos>
        <strand>+</strand>
        <context>CCGTTGACAT[A/G]GAARCTGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACAGAGTTTTTGTTTTATTCGGGAAGGCCGTTTCCGGAGCCGTTGACAT</left_flank>
        <right_flank>GAAACTGAATCCATGGCGGCCACGGGGACTCAAAATTTTCCCTCTTATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACTATATTTAATATAAGTCTCAGTGCGCCTGAGATTTTTTTGGGAGCCCCCCCCCCCTCCCATTTCCCTGAACATCTGAAATAAAGACCTGATTAGTTTTGTGAATTACTTTGCTGTGAAAGGTAGTGAGTTCAAAATATTAGAATGTATCATAATTTTTAGAACCGTGAGAATCTCTATTAATGAATGAATCAAAATTTTTAAAATTGTTTAAGAGTTGAATCTTATGTTACCGTTCATCAGATTTTCTTGAAAGTTGTGGTCTAGGTGGGTTTCTGTTTACGGTAGCAGCACTAGATTCAGCAACAATCATGTAATTCATCAGTTGCTTATTGTGTCATTTCTGAAACAAAAAACTCCTGACTATACAATTTTTTACTCCAGATTCTTAAGAAGCTGAGGGTTCGGTTGTCACCTTTCAATCCAAATGAGCTTCCCGAATAAAAATAACAGAGTTTTTGTTTTATTCGGGAAGGCCGTTTCCGGAGCCGTTGACATGGAAACTGAATCCATGGCGGCCACGGGGACTCAAAATTTTCCCTCTTATTTGATTTTTCGTTCAACTAAAAATAAGTAGTATCAGATGTTTAATATTCAGGTGCCCCAATCTGGACTAGTCTAAATGAATATTCCAGGGTAGCTTCTAGCCATTTTCAGTATCTCTGATTTGTAAATATCTCATGTTTTATAATATACTGTTTGCATTCAATTTCCTATTTGTATTCTTTTTCAGAGCATCCAATTCAAATTTGCAGCCTCATTCTCTGAAACTGATTTTTCTTTCTTTCTCATTAGCATTATCCTTTGAAACTCAAGAAGTCCTTCTTTCTTTTTGCTGAAATTTGGCACGTTTATGTTTTCCTCAGCCACACCCAAATCCTGATCCTTCCTTTCTCTCGGAACCAAATCCGGTGATGTCGACAGCTCTCTTGCACTCATCGTCTCTCATTAGTGCACAATGTTTTTGTATAAAGCTTCTAAAGCTGGCCACAGCGGTTG</canonical>
            <polymorphic>CACTATATTTAATATAAGTCTCAGTGCGCCTGAGATTTTTTTGGGAGCCCCCCCCCCCTCCCATTTCCCTGAACATCTGAAATAAAGACCTGATTAGTTTTGTGAATTACTTTGCTGTGAAAGGTAGTGAGTTCAAAATATTAGAATGTATCATAATTTTTAGAACCGTGAGAATCTCTATTAATGAATGAATCAAAATTTTTAAAATTGTTTAAGAGTTGAATCTTATGTTACCGTTCATCAGATTTTCTTGAAAGTTGTGGTCTAGGTGGGTTTCTGTTTACGGTAGCAGCACTAGATTCAGCAACAATCATGTAATTCATCAGTTGCTTATTGTGTCATTTCTGAAACAAAAAACTCCTGACTATACAATTTTTTACTCCAGATTCTTAAGAAGCTGAGGGTTCGGTTGTCACCTTTCAATCCAAATGAGCTTCCCGAATAAAAATAACAGAGTTTTTGTTTTATTCGGGAAGGCCGTTTCCGGAGCCGTTGACATRGAAACTGAATCCATGGCGGCCACGGGGACTCAAAATTTTCCCTCTTATTTGATTTTTCGTTCAACTAAAAATAAGTAGTATCAGATGTTTAATATTCAGGTGCCCCAATCTGGACTAGTCTAAATGAATATTCCAGGGTAGCTTCTAGCCATTTTCAGTATCTCTGATTTGTAAATATCTCATGTTTTATAATATACTGTTTGCATTCAATTTCCTATTTGTATTCTTTTTCAGAGCATCCAATTCAAATTTGCAGCCTCATTCTCTGAAACTGATTTTTCTTTCTTTCTCATTAGCATTATCCTTTGAAACTCAAGAAGTCCTTCTTTCTTTTTGCTGAAATTTGGCACGTTTATGTTTTCCTCAGCCACACCCAAATCCTGATCCTTCCTTTCTCTCGGAACCAAATCCGGTGATGTCGACAGCTCTCTTGCACTCATCGTCTCTCATTAGTGCACAATGTTTTTGTATAAAGCTTCTAAAGCTGGCCACAGCGGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>319 312 185 169 15</canonical_bands>
                <polymorphic_bands>319 312 200 169</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTCATCAGTTGCTTATTGTGT</pcr_primer_p1>
		<pcr_primer_p2>TTGAACGAAAAATCAAATAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATTCATCAGTTGCTTATTGTGTCATTTCTGAAACAAAAAACTCCTGACTATACAATTTTTTACTCCAGATTCTTAAGAAGCTGAGGGTTCGGTTGTCACCTTTCAATCCAAATGAGCTTCCCGAATAAAAATAACAGAGTTTTTGTTTTATTCGGGAAGGCCGTTTCCGGAGCCGTTGACATGGAAACTGAATCCATGGCGGCCACGGGGACTCAAAATTTTCCCTCTTATTTGATTTTTCGTTCAA</canonical_amplicon>
		<polymorphic_amplicon>AATTCATCAGTTGCTTATTGTGTCATTTCTGAAACAAAAAACTCCTGACTATACAATTTTTTACTCCAGATTCTTAAGAAGCTGAGGGTTCGGTTGTCACCTTTCAATCCAAATGAGCTTCCCGAATAAAAATAACAGAGTTTTTGTTTTATTCGGGAAGGCCGTTTCCGGAGCCGTTGACATRGAAACTGAATCCATGGCGGCCACGGGGACTCAAAATTTTCCCTCTTATTTGATTTTTCGTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33333</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>152915</contig_pos>
        <strand>+</strand>
        <context>TGACATRGAA[A/G]CTGAATCCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGTTTTTGTTTTATTCGGGAAGGCCGTTTCCGGAGCCGTTGACATGGAA</left_flank>
        <right_flank>CTGAATCCATGGCGGCCACGGGGACTCAAAATTTTCCCTCTTATTTGATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATTTAATATAAGTCTCAGTGCGCCTGAGATTTTTTTGGGAGCCCCCCCCCCCTCCCATTTCCCTGAACATCTGAAATAAAGACCTGATTAGTTTTGTGAATTACTTTGCTGTGAAAGGTAGTGAGTTCAAAATATTAGAATGTATCATAATTTTTAGAACCGTGAGAATCTCTATTAATGAATGAATCAAAATTTTTAAAATTGTTTAAGAGTTGAATCTTATGTTACCGTTCATCAGATTTTCTTGAAAGTTGTGGTCTAGGTGGGTTTCTGTTTACGGTAGCAGCACTAGATTCAGCAACAATCATGTAATTCATCAGTTGCTTATTGTGTCATTTCTGAAACAAAAAACTCCTGACTATACAATTTTTTACTCCAGATTCTTAAGAAGCTGAGGGTTCGGTTGTCACCTTTCAATCCAAATGAGCTTCCCGAATAAAAATAACAGAGTTTTTGTTTTATTCGGGAAGGCCGTTTCCGGAGCCGTTGACATGGAAACTGAATCCATGGCGGCCACGGGGACTCAAAATTTTCCCTCTTATTTGATTTTTCGTTCAACTAAAAATAAGTAGTATCAGATGTTTAATATTCAGGTGCCCCAATCTGGACTAGTCTAAATGAATATTCCAGGGTAGCTTCTAGCCATTTTCAGTATCTCTGATTTGTAAATATCTCATGTTTTATAATATACTGTTTGCATTCAATTTCCTATTTGTATTCTTTTTCAGAGCATCCAATTCAAATTTGCAGCCTCATTCTCTGAAACTGATTTTTCTTTCTTTCTCATTAGCATTATCCTTTGAAACTCAAGAAGTCCTTCTTTCTTTTTGCTGAAATTTGGCACGTTTATGTTTTCCTCAGCCACACCCAAATCCTGATCCTTCCTTTCTCTCGGAACCAAATCCGGTGATGTCGACAGCTCTCTTGCACTCATCGTCTCTCATTAGTGCACAATGTTTTTGTATAAAGCTTCTAAAGCTGGCCACAGCGGTTGTCCG</canonical>
            <polymorphic>ATATTTAATATAAGTCTCAGTGCGCCTGAGATTTTTTTGGGAGCCCCCCCCCCCTCCCATTTCCCTGAACATCTGAAATAAAGACCTGATTAGTTTTGTGAATTACTTTGCTGTGAAAGGTAGTGAGTTCAAAATATTAGAATGTATCATAATTTTTAGAACCGTGAGAATCTCTATTAATGAATGAATCAAAATTTTTAAAATTGTTTAAGAGTTGAATCTTATGTTACCGTTCATCAGATTTTCTTGAAAGTTGTGGTCTAGGTGGGTTTCTGTTTACGGTAGCAGCACTAGATTCAGCAACAATCATGTAATTCATCAGTTGCTTATTGTGTCATTTCTGAAACAAAAAACTCCTGACTATACAATTTTTTACTCCAGATTCTTAAGAAGCTGAGGGTTCGGTTGTCACCTTTCAATCCAAATGAGCTTCCCGAATAAAAATAACAGAGTTTTTGTTTTATTCGGGAAGGCCGTTTCCGGAGCCGTTGACATGGAARCTGAATCCATGGCGGCCACGGGGACTCAAAATTTTCCCTCTTATTTGATTTTTCGTTCAACTAAAAATAAGTAGTATCAGATGTTTAATATTCAGGTGCCCCAATCTGGACTAGTCTAAATGAATATTCCAGGGTAGCTTCTAGCCATTTTCAGTATCTCTGATTTGTAAATATCTCATGTTTTATAATATACTGTTTGCATTCAATTTCCTATTTGTATTCTTTTTCAGAGCATCCAATTCAAATTTGCAGCCTCATTCTCTGAAACTGATTTTTCTTTCTTTCTCATTAGCATTATCCTTTGAAACTCAAGAAGTCCTTCTTTCTTTTTGCTGAAATTTGGCACGTTTATGTTTTCCTCAGCCACACCCAAATCCTGATCCTTCCTTTCTCTCGGAACCAAATCCGGTGATGTCGACAGCTCTCTTGCACTCATCGTCTCTCATTAGTGCACAATGTTTTTGTATAAAGCTTCTAAAGCTGGCCACAGCGGTTGTCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCATCAGTTGCTTATTGTGT</pcr_primer_p1>
		<pcr_primer_p2>TTGAACGAAAAATCAAATAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATTCATCAGTTGCTTATTGTGTCATTTCTGAAACAAAAAACTCCTGACTATACAATTTTTTACTCCAGATTCTTAAGAAGCTGAGGGTTCGGTTGTCACCTTTCAATCCAAATGAGCTTCCCGAATAAAAATAACAGAGTTTTTGTTTTATTCGGGAAGGCCGTTTCCGGAGCCGTTGACATGGAAACTGAATCCATGGCGGCCACGGGGACTCAAAATTTTCCCTCTTATTTGATTTTTCGTTCAA</canonical_amplicon>
		<polymorphic_amplicon>AATTCATCAGTTGCTTATTGTGTCATTTCTGAAACAAAAAACTCCTGACTATACAATTTTTTACTCCAGATTCTTAAGAAGCTGAGGGTTCGGTTGTCACCTTTCAATCCAAATGAGCTTCCCGAATAAAAATAACAGAGTTTTTGTTTTATTCGGGAAGGCCGTTTCCGGAGCCGTTGACATGGAARCTGAATCCATGGCGGCCACGGGGACTCAAAATTTTCCCTCTTATTTGATTTTTCGTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33334</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>153077</contig_pos>
        <strand>+</strand>
        <context>CAGTATCTCT[A/G]ATTTGTAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGTCTAAATGAATATTCCAGGGTAGCTTCTAGCCATTTTCAGTATCTCT</left_flank>
        <right_flank>ATTTGTAAATATCTCATGTTTTATAATATACTGTTTGCATTCAATTTCCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTGAGAATCTCTATTAATGAATGAATCAAAATTTTTAAAATTGTTTAAGAGTTGAATCTTATGTTACCGTTCATCAGATTTTCTTGAAAGTTGTGGTCTAGGTGGGTTTCTGTTTACGGTAGCAGCACTAGATTCAGCAACAATCATGTAATTCATCAGTTGCTTATTGTGTCATTTCTGAAACAAAAAACTCCTGACTATACAATTTTTTACTCCAGATTCTTAAGAAGCTGAGGGTTCGGTTGTCACCTTTCAATCCAAATGAGCTTCCCGAATAAAAATAACAGAGTTTTTGTTTTATTCGGGAAGGCCGTTTCCGGAGCCGTTGACATGGAAACTGAATCCATGGCGGCCACGGGGACTCAAAATTTTCCCTCTTATTTGATTTTTCGTTCAACTAAAAATAAGTAGTATCAGATGTTTAATATTCAGGTGCCCCAATCTGGACTAGTCTAAATGAATATTCCAGGGTAGCTTCTAGCCATTTTCAGTATCTCTGATTTGTAAATATCTCATGTTTTATAATATACTGTTTGCATTCAATTTCCTATTTGTATTCTTTTTCAGAGCATCCAATTCAAATTTGCAGCCTCATTCTCTGAAACTGATTTTTCTTTCTTTCTCATTAGCATTATCCTTTGAAACTCAAGAAGTCCTTCTTTCTTTTTGCTGAAATTTGGCACGTTTATGTTTTCCTCAGCCACACCCAAATCCTGATCCTTCCTTTCTCTCGGAACCAAATCCGGTGATGTCGACAGCTCTCTTGCACTCATCGTCTCTCATTAGTGCACAATGTTTTTGTATAAAGCTTCTAAAGCTGGCCACAGCGGTTGTCCGGCGTCGCCCGCCCTTTGGCGCGACGTCGTCCTGTTCTAGGAAGCCGACAAGTGTGTGAGTGCGTGTGTGCCCCTCGTAATCTGCACAGCGCTCGTCGCGCCACAAGGAAAATGCGTGTGTTCTCCTAATTCGCCACATGCTGCGTTTTTCCAAACACAGATA</canonical>
            <polymorphic>CGTGAGAATCTCTATTAATGAATGAATCAAAATTTTTAAAATTGTTTAAGAGTTGAATCTTATGTTACCGTTCATCAGATTTTCTTGAAAGTTGTGGTCTAGGTGGGTTTCTGTTTACGGTAGCAGCACTAGATTCAGCAACAATCATGTAATTCATCAGTTGCTTATTGTGTCATTTCTGAAACAAAAAACTCCTGACTATACAATTTTTTACTCCAGATTCTTAAGAAGCTGAGGGTTCGGTTGTCACCTTTCAATCCAAATGAGCTTCCCGAATAAAAATAACAGAGTTTTTGTTTTATTCGGGAAGGCCGTTTCCGGAGCCGTTGACATGGAAACTGAATCCATGGCGGCCACGGGGACTCAAAATTTTCCCTCTTATTTGATTTTTCGTTCAACTAAAAATAAGTAGTATCAGATGTTTAATATTCAGGTGCCCCAATCTGGACTAGTCTAAATGAATATTCCAGGGTAGCTTCTAGCCATTTTCAGTATCTCTRATTTGTAAATATCTCATGTTTTATAATATACTGTTTGCATTCAATTTCCTATTTGTATTCTTTTTCAGAGCATCCAATTCAAATTTGCAGCCTCATTCTCTGAAACTGATTTTTCTTTCTTTCTCATTAGCATTATCCTTTGAAACTCAAGAAGTCCTTCTTTCTTTTTGCTGAAATTTGGCACGTTTATGTTTTCCTCAGCCACACCCAAATCCTGATCCTTCCTTTCTCTCGGAACCAAATCCGGTGATGTCGACAGCTCTCTTGCACTCATCGTCTCTCATTAGTGCACAATGTTTTTGTATAAAGCTTCTAAAGCTGGCCACAGCGGTTGTCCGGCGTCGCCCGCCCTTTGGCGCGACGTCGTCCTGTTCTAGGAAGCCGACAAGTGTGTGAGTGCGTGTGTGCCCCTCGTAATCTGCACAGCGCTCGTCGCGCCACAAGGAAAATGCGTGTGTTCTCCTAATTCGCCACATGCTGCGTTTTTCCAAACACAGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>266 237 133 103 82 77 68 34</canonical_bands>
                <polymorphic_bands>266 237 150 133 103 77 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAATTTTCCCTCTTATTTGAT</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAAAATCAGTTTCAGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CAAAATTTTCCCTCTTATTTGATTTTTCGTTCAACTAAAAATAAGTAGTATCAGATGTTTAATATTCAGGTGCCCCAATCTGGACTAGTCTAAATGAATATTCCAGGGTAGCTTCTAGCCATTTTCAGTATCTCTGATTTGTAAATATCTCATGTTTTATAATATACTGTTTGCATTCAATTTCCTATTTGTATTCTTTTTCAGAGCATCCAATTCAAATTTGCAGCCTCATTCTCTGAAACTGATTTTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>CAAAATTTTCCCTCTTATTTGATTTTTCGTTCAACTAAAAATAAGTAGTATCAGATGTTTAATATTCAGGTGCCCCAATCTGGACTAGTCTAAATGAATATTCCAGGGTAGCTTCTAGCCATTTTCAGTATCTCTRATTTGTAAATATCTCATGTTTTATAATATACTGTTTGCATTCAATTTCCTATTTGTATTCTTTTTCAGAGCATCCAATTCAAATTTGCAGCCTCATTCTCTGAAACTGATTTTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33335</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>209755</contig_pos>
        <strand>+</strand>
        <context>GCAGATGTTT[C/T]CGATGCTTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAAACTCGATCCTCGTTAGAAACTGAGCAATAAATTGCAGCAGATGTTT</left_flank>
        <right_flank>CGATGCTTGTCGGGGTCATTTTTACTGCACACGCGAGTTTCACATGAGCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCACCGGTTTTTAAGTCGTCGTGCAGCATATAAAAAATAAGGTCGAAAACTGTAAATATTTGTTCATCACATGCACATATTCCTACCTGTCTTTCTCTCAATTCCCTCTCATTCCCAACTGATAATAACTAACAACTTGAATGTCTCCATTTTTTGTCGTTTTTCTCTGATTTCGAAAAGTTTCGACACTTTAATTAATTCAGAAACAAATCGAATTAGCTCAATTCCATCGGTCACAACAACAAGATCAACCGACGATGGAATTGTCGTCGCTAGCGGATGATGGCCAAGTAGCAGTTCTAACAGGTAGGATTACAAACTTTAGTGTTAAATTCTGATTTCGAAACGATTTGCCAACTTAGAACTAATAACCATCTTGGACCACGCGAACATTTAAAATGGATAAAAAACTCAACATATCCCATTCAGTTTCTCAAGTGGAGGCAAAGGAAACTCGATCCTCGTTAGAAACTGAGCAATAAATTGCAGCAGATGTTTCCGATGCTTGTCGGGGTCATTTTTACTGCACACGCGAGTTTCACATGAGCGCTCCTGTTTTTTTTCCAGAGCTAGAAATTTTTTCCAGTTCTTATTGCTTTTCGAAACGCATTTCTCCTCTCGACCGCTTTCAAAAACACGGGGTTCCTGTTGTTCGATTTCCTTTTTGGAGTGAATGAAAAATTGAGTTTCTGCCTTCTAGGACTTTATGTTTTGGTGGCGTTTCGATCTGAAAAGACCAACAAGTTTAGAAAAAGTGAATGCAAATCAATAAATAAATTATTCGTGTTCTATCTCAAAGGAGACATAGCAAAAACAAGTTTTCTGGCGTAAACAAAATTTAATTAATTATCAAAAACCTGAGAAAAACTTTTATGTTCTTCAGAAAACGGGAAATGTCCCTGTCTAGCACAAATGCCTTTTTTTTCGCTCGCGTTTTCTCAAAAACTCGAAAACACTCAGTTCGATTCTCAAACATGAGAACACAAAAAGAAATTGGAG</canonical>
            <polymorphic>GTCACCGGTTTTTAAGTCGTCGTGCAGCATATAAAAAATAAGGTCGAAAACTGTAAATATTTGTTCATCACATGCACATATTCCTACCTGTCTTTCTCTCAATTCCCTCTCATTCCCAACTGATAATAACTAACAACTTGAATGTCTCCATTTTTTGTCGTTTTTCTCTGATTTCGAAAAGTTTCGACACTTTAATTAATTCAGAAACAAATCGAATTAGCTCAATTCCATCGGTCACAACAACAAGATCAACCGACGATGGAATTGTCGTCGCTAGCGGATGATGGCCAAGTAGCAGTTCTAACAGGTAGGATTACAAACTTTAGTGTTAAATTCTGATTTCGAAACGATTTGCCAACTTAGAACTAATAACCATCTTGGACCACGCGAACATTTAAAATGGATAAAAAACTCAACATATCCCATTCAGTTTCTCAAGTGGAGGCAAAGGAAACTCGATCCTCGTTAGAAACTGAGCAATAAATTGCAGCAGATGTTTYCGATGCTTGTCGGGGTCATTTTTACTGCACACGCGAGTTTCACATGAGCGCTCCTGTTTTTTTTCCAGAGCTAGAAATTTTTTCCAGTTCTTATTGCTTTTCGAAACGCATTTCTCCTCTCGACCGCTTTCAAAAACACGGGGTTCCTGTTGTTCGATTTCCTTTTTGGAGTGAATGAAAAATTGAGTTTCTGCCTTCTAGGACTTTATGTTTTGGTGGCGTTTCGATCTGAAAAGACCAACAAGTTTAGAAAAAGTGAATGCAAATCAATAAATAAATTATTCGTGTTCTATCTCAAAGGAGACATAGCAAAAACAAGTTTTCTGGCGTAAACAAAATTTAATTAATTATCAAAAACCTGAGAAAAACTTTTATGTTCTTCAGAAAACGGGAAATGTCCCTGTCTAGCACAAATGCCTTTTTTTTCGCTCGCGTTTTCTCAAAAACTCGAAAACACTCAGTTCGATTCTCAAACATGAGAACACAAAAAGAAATTGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>229 169 164 153 134 117 34</canonical_bands>
                <polymorphic_bands>393 169 153 134 117 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGCCAACTTAGAACTAATAACC</pcr_primer_p1>
		<pcr_primer_p2>AAAAGCAATAAGAACTGGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGCCAACTTAGAACTAATAACCATCTTGGACCACGCGAACATTTAAAATGGATAAAAAACTCAACATATCCCATTCAGTTTCTCAAGTGGAGGCAAAGGAAACTCGATCCTCGTTAGAAACTGAGCAATAAATTGCAGCAGATGTTTCCGATGCTTGTCGGGGTCATTTTTACTGCACACGCGAGTTTCACATGAGCGCTCCTGTTTTTTTTCCAGAGCTAGAAATTTTTTCCAGTTCTTATTGCTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGCCAACTTAGAACTAATAACCATCTTGGACCACGCGAACATTTAAAATGGATAAAAAACTCAACATATCCCATTCAGTTTCTCAAGTGGAGGCAAAGGAAACTCGATCCTCGTTAGAAACTGAGCAATAAATTGCAGCAGATGTTTYCGATGCTTGTCGGGGTCATTTTTACTGCACACGCGAGTTTCACATGAGCGCTCCTGTTTTTTTTCCAGAGCTAGAAATTTTTTCCAGTTCTTATTGCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33336</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>211310</contig_pos>
        <strand>+</strand>
        <context>CAGTCTTTAG[C/T]CTTTTTTCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCTCAAGCAGAGCCGTAAAAGTGAACAACGTCATGTGTGCAGTCTTTAG</left_flank>
        <right_flank>CTTTTTTCATTGATTTAGTTTCAAAAAAGTTCTAGCTTTCATTAATGAAC</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGATTCGTCGTCTTCTTATAAACACGGATGCTCGTCTTGAACGGCGGCACGGACAAGAAAACCGAGAGCATCGTGTTGCTTTTTTTTCACAGTTTTTCATTTCTGAAAAACAGGGACCAAAATCTTGTTTTAGCGAATTCTAGAAACTTATTCTAGCTTATCCAGATATGAGCTCATCTAGGATAAAAGTGATAAACAACTTTTCAAGGATTTCTGACTTTTCGAATAATTCTTTCATTCTTTGCTTCCAGAAAAACCAATCTTTCGAATCATTTTTCGAGTATAATGTTTTCAAAAAACAAATATTGAGTCTTTAATTTAAGATGCGTGAGAAACAAATACCAGTCAGTCCTTCTTCCTTTTTTTAAAACCAGCAAAACAAACCACTGCTTGGTTGTATGTCTTTAGTCTCGACGAGTGAACACAATAATTATTCAGCTACTTGACAGGCTCAAGCAGAGCCGTAAAAGTGAACAACGTCATGTGTGCAGTCTTTAGTCTTTTTTCATTGATTTAGTTTCAAAAAAGTTCTAGCTTTCATTAATGAACTTTTTCTTATTAGCATAATGTTCATGAAAATTGTTTTTCTGTAAAAAAATAATTTGTTTACAACACAAAATTATTGAATAAAAAATTGTTGTTCAGCTGAAAAATCAGAGAATTGTGTTCAGCTAAAATTTCAGCTTTTCAAGACTAAAAATAGTGTTCTCCGGTTAGAAATCAGTTACTACTAAATATTATGGCTATTTTTCAAAATTTATGTATTCTAATTAATTTTTGGTCTTTTTCCTGCTTTTGAATTCTTAGAAAAGTGTCATTTCAAAAAAAAAAATCACGCACTGTTTTATCACCTGCGTGTCCTTTATTTGAAAATTGTTTATGTGCACTTTACTTGAGAAGAAATCAACTGAAGCGAATTGAAAGCAATTCGTGGTTTTTCCTATTCGACAGTATTTTGGCTCATTTCGAAACTACAACACTTCGAAACCATTCGTTTCG</canonical>
            <polymorphic>CGGATTCGTCGTCTTCTTATAAACACGGATGCTCGTCTTGAACGGCGGCACGGACAAGAAAACCGAGAGCATCGTGTTGCTTTTTTTTCACAGTTTTTCATTTCTGAAAAACAGGGACCAAAATCTTGTTTTAGCGAATTCTAGAAACTTATTCTAGCTTATCCAGATATGAGCTCATCTAGGATAAAAGTGATAAACAACTTTTCAAGGATTTCTGACTTTTCGAATAATTCTTTCATTCTTTGCTTCCAGAAAAACCAATCTTTCGAATCATTTTTCGAGTATAATGTTTTCAAAAAACAAATATTGAGTCTTTAATTTAAGATGCGTGAGAAACAAATACCAGTCAGTCCTTCTTCCTTTTTTTAAAACCAGCAAAACAAACCACTGCTTGGTTGTATGTCTTTAGTCTCGACGAGTGAACACAATAATTATTCAGCTACTTGACAGGCTCAAGCAGAGCCGTAAAAGTGAACAACGTCATGTGTGCAGTCTTTAGYCTTTTTTCATTGATTTAGTTTCAAAAAAGTTCTAGCTTTCATTAATGAACTTTTTCTTATTAGCATAATGTTCATGAAAATTGTTTTTCTGTAAAAAAATAATTTGTTTACAACACAAAATTATTGAATAAAAAATTGTTGTTCAGCTGAAAAATCAGAGAATTGTGTTCAGCTAAAATTTCAGCTTTTCAAGACTAAAAATAGTGTTCTCCGGTTAGAAATCAGTTACTACTAAATATTATGGCTATTTTTCAAAATTTATGTATTCTAATTAATTTTTGGTCTTTTTCCTGCTTTTGAATTCTTAGAAAAGTGTCATTTCAAAAAAAAAAATCACGCACTGTTTTATCACCTGCGTGTCCTTTATTTGAAAATTGTTTATGTGCACTTTACTTGAGAAGAAATCAACTGAAGCGAATTGAAAGCAATTCGTGGTTTTTCCTATTCGACAGTATTTTGGCTCATTTCGAAACTACAACACTTCGAAACCATTCGTTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGACGAGTGAACACAATAAT</pcr_primer_p1>
		<pcr_primer_p2>GAACACAATTCTCTGATTTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>TCGACGAGTGAACACAATAATTATTCAGCTACTTGACAGGCTCAAGCAGAGCCGTAAAAGTGAACAACGTCATGTGTGCAGTCTTTAGTCTTTTTTCATTGATTTAGTTTCAAAAAAGTTCTAGCTTTCATTAATGAACTTTTTCTTATTAGCATAATGTTCATGAAAATTGTTTTTCTGTAAAAAAATAATTTGTTTACAACACAAAATTATTGAATAAAAAATTGTTGTTCAGCTGAAAAATCAGAGAATTGTGTTC</canonical_amplicon>
		<polymorphic_amplicon>TCGACGAGTGAACACAATAATTATTCAGCTACTTGACAGGCTCAAGCAGAGCCGTAAAAGTGAACAACGTCATGTGTGCAGTCTTTAGYCTTTTTTCATTGATTTAGTTTCAAAAAAGTTCTAGCTTTCATTAATGAACTTTTTCTTATTAGCATAATGTTCATGAAAATTGTTTTTCTGTAAAAAAATAATTTGTTTACAACACAAAATTATTGAATAAAAAATTGTTGTTCAGCTGAAAAATCAGAGAATTGTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33337</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>211380</contig_pos>
        <strand>+</strand>
        <context>TTAGCATAAT[A/G]TTCATGAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAAAAAAGTTCTAGCTTTCATTAATGAACTTTTTCTTATTAGCATAAT</left_flank>
        <right_flank>TTCATGAAAATTGTTTTTCTGTAAAAAAATAATTTGTTTACAACACAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGTGTTGCTTTTTTTTCACAGTTTTTCATTTCTGAAAAACAGGGACCAAAATCTTGTTTTAGCGAATTCTAGAAACTTATTCTAGCTTATCCAGATATGAGCTCATCTAGGATAAAAGTGATAAACAACTTTTCAAGGATTTCTGACTTTTCGAATAATTCTTTCATTCTTTGCTTCCAGAAAAACCAATCTTTCGAATCATTTTTCGAGTATAATGTTTTCAAAAAACAAATATTGAGTCTTTAATTTAAGATGCGTGAGAAACAAATACCAGTCAGTCCTTCTTCCTTTTTTTAAAACCAGCAAAACAAACCACTGCTTGGTTGTATGTCTTTAGTCTCGACGAGTGAACACAATAATTATTCAGCTACTTGACAGGCTCAAGCAGAGCCGTAAAAGTGAACAACGTCATGTGTGCAGTCTTTAGTCTTTTTTCATTGATTTAGTTTCAAAAAAGTTCTAGCTTTCATTAATGAACTTTTTCTTATTAGCATAATGTTCATGAAAATTGTTTTTCTGTAAAAAAATAATTTGTTTACAACACAAAATTATTGAATAAAAAATTGTTGTTCAGCTGAAAAATCAGAGAATTGTGTTCAGCTAAAATTTCAGCTTTTCAAGACTAAAAATAGTGTTCTCCGGTTAGAAATCAGTTACTACTAAATATTATGGCTATTTTTCAAAATTTATGTATTCTAATTAATTTTTGGTCTTTTTCCTGCTTTTGAATTCTTAGAAAAGTGTCATTTCAAAAAAAAAAATCACGCACTGTTTTATCACCTGCGTGTCCTTTATTTGAAAATTGTTTATGTGCACTTTACTTGAGAAGAAATCAACTGAAGCGAATTGAAAGCAATTCGTGGTTTTTCCTATTCGACAGTATTTTGGCTCATTTCGAAACTACAACACTTCGAAACCATTCGTTTCGAAACCGTGGTAATACAAGCGAATAAATAGATTTTAGACTACTGTAACAAGTTTAGGGTTCTCAAATATGC</canonical>
            <polymorphic>ATCGTGTTGCTTTTTTTTCACAGTTTTTCATTTCTGAAAAACAGGGACCAAAATCTTGTTTTAGCGAATTCTAGAAACTTATTCTAGCTTATCCAGATATGAGCTCATCTAGGATAAAAGTGATAAACAACTTTTCAAGGATTTCTGACTTTTCGAATAATTCTTTCATTCTTTGCTTCCAGAAAAACCAATCTTTCGAATCATTTTTCGAGTATAATGTTTTCAAAAAACAAATATTGAGTCTTTAATTTAAGATGCGTGAGAAACAAATACCAGTCAGTCCTTCTTCCTTTTTTTAAAACCAGCAAAACAAACCACTGCTTGGTTGTATGTCTTTAGTCTCGACGAGTGAACACAATAATTATTCAGCTACTTGACAGGCTCAAGCAGAGCCGTAAAAGTGAACAACGTCATGTGTGCAGTCTTTAGTCTTTTTTCATTGATTTAGTTTCAAAAAAGTTCTAGCTTTCATTAATGAACTTTTTCTTATTAGCATAATRTTCATGAAAATTGTTTTTCTGTAAAAAAATAATTTGTTTACAACACAAAATTATTGAATAAAAAATTGTTGTTCAGCTGAAAAATCAGAGAATTGTGTTCAGCTAAAATTTCAGCTTTTCAAGACTAAAAATAGTGTTCTCCGGTTAGAAATCAGTTACTACTAAATATTATGGCTATTTTTCAAAATTTATGTATTCTAATTAATTTTTGGTCTTTTTCCTGCTTTTGAATTCTTAGAAAAGTGTCATTTCAAAAAAAAAAATCACGCACTGTTTTATCACCTGCGTGTCCTTTATTTGAAAATTGTTTATGTGCACTTTACTTGAGAAGAAATCAACTGAAGCGAATTGAAAGCAATTCGTGGTTTTTCCTATTCGACAGTATTTTGGCTCATTTCGAAACTACAACACTTCGAAACCATTCGTTTCGAAACCGTGGTAATACAAGCGAATAAATAGATTTTAGACTACTGTAACAAGTTTAGGGTTCTCAAATATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAAGTGAACAACGTCATGTG</pcr_primer_p1>
		<pcr_primer_p2>ACCGGAGAACACTATTTTTAGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAAAGTGAACAACGTCATGTGTGCAGTCTTTAGTCTTTTTTCATTGATTTAGTTTCAAAAAAGTTCTAGCTTTCATTAATGAACTTTTTCTTATTAGCATAATGTTCATGAAAATTGTTTTTCTGTAAAAAAATAATTTGTTTACAACACAAAATTATTGAATAAAAAATTGTTGTTCAGCTGAAAAATCAGAGAATTGTGTTCAGCTAAAATTTCAGCTTTTCAAGACTAAAAATAGTGTTCTCCGGT</canonical_amplicon>
		<polymorphic_amplicon>TAAAAGTGAACAACGTCATGTGTGCAGTCTTTAGTCTTTTTTCATTGATTTAGTTTCAAAAAAGTTCTAGCTTTCATTAATGAACTTTTTCTTATTAGCATAATRTTCATGAAAATTGTTTTTCTGTAAAAAAATAATTTGTTTACAACACAAAATTATTGAATAAAAAATTGTTGTTCAGCTGAAAAATCAGAGAATTGTGTTCAGCTAAAATTTCAGCTTTTCAAGACTAAAAATAGTGTTCTCCGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33338</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>230458</contig_pos>
        <strand>+</strand>
        <context>GAGGAGCTGA[A/T]TCTCCCTTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACGTCAGTCTCACTTGGCAATGGCTGGCTCTCATTTTCAGGAGGAGCTGA</left_flank>
        <right_flank>TCTCCCTTCGCTGGCATCTTATTTTCAGAAAGTTTGGAGTTGGCGACATA</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTACTTTTTCTGCTTCTTCTTCGACTCTCGTGGTTTTGCAGCTTGTGACGACGCAAATGCTTTCTGATGGCCTGGATTGCTTGGCTTTCTCTGTACAGTTGTCTTGAGAGCGACATGAGGGAGTTCTTCGGCTGGAGCCAGCACATCGTACTGAACAACTTTCTCTTCGGCTTCTGACTCAGCAATTTCGTCTTCTCTGAAATTTTGGGGAGTTAAAAAAATGGTAAGAAATATATGAACTCACGAATCCTGATCCTCTTCTTGACTCTCTTGGATCCATTTTTTATAGATTTGGTTGCGATTCACCCATTTGGAGTAATCAACCACCTTGGTTACTGGAGCTGGTGTTACCTCTGATTCCTTGTCGTGGATATCAGAGCGCTTTTCAGGAGAAATGGATTGTTGCTCCGTTGGCATCTTCGTTTCAGAACTGGAAAGTTTCGAGTTGACGTCAGTCTCACTTGGCAATGGCTGGCTCTCATTTTCAGGAGGAGCTGAATCTCCCTTCGCTGGCATCTTATTTTCAGAAAGTTTGGAGTTGGCGACATATCCATTTGGCAATGACTGGTATTCATTTTGATGGATCAACTCCTCGACTTCGGGTTCGGCGACAACATTGACATTTCCATCGTCCAGAGCTACGCGATCCAAAGCTTTGGCAACTGTTGGAACGTCAGCAACTTCAGGGATTGAAATGGACTCAACAGACGGACAGTCATTGTTCTGGATGATGTTTTCTTTATCCTCGTCATCCTCTGCGTCTCCCATCTCCTCCACATCCTCATCTCTCGACTTCTGGGTAGTTTTGGCTTGAATTCGACGAGAAGACTTTCTCATGACGTTTCTCGCGCCGAACTTGTATTTTGCAGAAACAACAATCACTCGACGGGACTTCCTGCAAAAAAAATTCGATTAATGTGCGTTCGAGTTGTAATTCAGTTCATGCGTTGGCAAATAAGTCGGAGGTTACAGAAAATCAGGGGTACGACGGGGTACAAA</canonical>
            <polymorphic>ACTACTTTTTCTGCTTCTTCTTCGACTCTCGTGGTTTTGCAGCTTGTGACGACGCAAATGCTTTCTGATGGCCTGGATTGCTTGGCTTTCTCTGTACAGTTGTCTTGAGAGCGACATGAGGGAGTTCTTCGGCTGGAGCCAGCACATCGTACTGAACAACTTTCTCTTCGGCTTCTGACTCAGCAATTTCGTCTTCTCTGAAATTTTGGGGAGTTAAAAAAATGGTAAGAAATATATGAACTCACGAATCCTGATCCTCTTCTTGACTCTCTTGGATCCATTTTTTATAGATTTGGTTGCGATTCACCCATTTGGAGTAATCAACCACCTTGGTTACTGGAGCTGGTGTTACCTCTGATTCCTTGTCGTGGATATCAGAGCGCTTTTCAGGAGAAATGGATTGTTGCTCCGTTGGCATCTTCGTTTCAGAACTGGAAAGTTTCGAGTTGACGTCAGTCTCACTTGGCAATGGCTGGCTCTCATTTTCAGGAGGAGCTGAWTCTCCCTTCGCTGGCATCTTATTTTCAGAAAGTTTGGAGTTGGCGACATATCCATTTGGCAATGACTGGTATTCATTTTGATGGATCAACTCCTCGACTTCGGGTTCGGCGACAACATTGACATTTCCATCGTCCAGAGCTACGCGATCCAAAGCTTTGGCAACTGTTGGAACGTCAGCAACTTCAGGGATTGAAATGGACTCAACAGACGGACAGTCATTGTTCTGGATGATGTTTTCTTTATCCTCGTCATCCTCTGCGTCTCCCATCTCCTCCACATCCTCATCTCTCGACTTCTGGGTAGTTTTGGCTTGAATTCGACGAGAAGACTTTCTCATGACGTTTCTCGCGCCGAACTTGTATTTTGCAGAAACAACAATCACTCGACGGGACTTCCTGCAAAAAAAATTCGATTAATGTGCGTTCGAGTTGTAATTCAGTTCATGCGTTGGCAAATAAGTCGGAGGTTACAGAAAATCAGGGGTACGACGGGGTACAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 246 141 56 55</canonical_bands>
                <polymorphic_bands>643 246 56 55</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGTTACCTCTGATTCCTTGTC</pcr_primer_p1>
		<pcr_primer_p2>GAGTTGATCCATCAAAATGAATA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTGTTACCTCTGATTCCTTGTCGTGGATATCAGAGCGCTTTTCAGGAGAAATGGATTGTTGCTCCGTTGGCATCTTCGTTTCAGAACTGGAAAGTTTCGAGTTGACGTCAGTCTCACTTGGCAATGGCTGGCTCTCATTTTCAGGAGGAGCTGAATCTCCCTTCGCTGGCATCTTATTTTCAGAAAGTTTGGAGTTGGCGACATATCCATTTGGCAATGACTGGTATTCATTTTGATGGATCAACTC</canonical_amplicon>
		<polymorphic_amplicon>GTGTTACCTCTGATTCCTTGTCGTGGATATCAGAGCGCTTTTCAGGAGAAATGGATTGTTGCTCCGTTGGCATCTTCGTTTCAGAACTGGAAAGTTTCGAGTTGACGTCAGTCTCACTTGGCAATGGCTGGCTCTCATTTTCAGGAGGAGCTGAWTCTCCCTTCGCTGGCATCTTATTTTCAGAAAGTTTGGAGTTGGCGACATATCCATTTGGCAATGACTGGTATTCATTTTGATGGATCAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33339</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>236472</contig_pos>
        <strand>+</strand>
        <context>TATTGTTGTA[A/G]AATTGCAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATAAAATACCAAATATGTTTTCTAGCCGTCCGAAAATTTATTGTTGTA</left_flank>
        <right_flank>AATTGCAATTCAACTGCATAATTTTTCAAACTGTCGAACGTCTAGACCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAGGCCATCCATCTGAATTCTGGCAGAGAGTGATGTAGGTATTACGGAAAATTAAGAGACCGTGCAGAGTACTTTGATAGTGTGTTGTGCAACAGGAGAAGATGACTATGGATGTTTGGACTAACTAAGAGTGACCAATTCTTATGAAGTAGATAGAACAAAAATGATAATATATGATACGATACCACAAAGATTTTCAGATATCCTGCATTGAATAGAGACACATGAAAAGATGAGATTCATAATTTTACTTTAATAAAAATAAATCTTAAGCGGAAAAATGTTTGAGAAAATTGTTTCTGATTTGAGATTTTTACCTCAGGATTTCAATTCACTGGCTTTCATACCAAAGAAAGCACGGTTAGCCTCTTGTCGTCAATATTACTGAGAAACTTTAGAAGTTTTGAATTTTTCGCCCGAGTCCGATGAATATTCAAGAGGCACCCAAAATAAAATACCAAATATGTTTTCTAGCCGTCCGAAAATTTATTGTTGTAAAATTGCAATTCAACTGCATAATTTTTCAAACTGTCGAACGTCTAGACCTGAAAAAAAACAGGAATTTCAAATCTACATCTTTCTGACTATTGAATTCTGTTGTTTTCCCTGCAGCCATTTTTCTATAATCTCTCATTAGTACTCATTTTTCCCAATTATATTTTTCTTTGGCCAAACGGATTCCCTACTATCTCCCAAATGTCTCTCTATGTGTAGGCCTTCTGCTGAGACGATTGAATTGATTGTCACCTGCCCAGCCTTTTTTTATCGCCCACCAAGAGATGGGTCTCTGTTACTTGTGTTAGCAACAAGTAACAGAGAAACGCATTCAAAAATGGAATATTTCTAGGAAAAATATAACAAATTTCGATCCTGGCGTCTCAAAAACAAAGTTAAAACATCAGGAAAATCTAGCGAAAATGATTTTTCTGGAAACTGTTGGTAAACTTGAAACTTGAAAAATCTTACTTTCTGGAAACGATTATTTGAAAACTCCTTTT</canonical>
            <polymorphic>ATAAGGCCATCCATCTGAATTCTGGCAGAGAGTGATGTAGGTATTACGGAAAATTAAGAGACCGTGCAGAGTACTTTGATAGTGTGTTGTGCAACAGGAGAAGATGACTATGGATGTTTGGACTAACTAAGAGTGACCAATTCTTATGAAGTAGATAGAACAAAAATGATAATATATGATACGATACCACAAAGATTTTCAGATATCCTGCATTGAATAGAGACACATGAAAAGATGAGATTCATAATTTTACTTTAATAAAAATAAATCTTAAGCGGAAAAATGTTTGAGAAAATTGTTTCTGATTTGAGATTTTTACCTCAGGATTTCAATTCACTGGCTTTCATACCAAAGAAAGCACGGTTAGCCTCTTGTCGTCAATATTACTGAGAAACTTTAGAAGTTTTGAATTTTTCGCCCGAGTCCGATGAATATTCAAGAGGCACCCAAAATAAAATACCAAATATGTTTTCTAGCCGTCCGAAAATTTATTGTTGTARAATTGCAATTCAACTGCATAATTTTTCAAACTGTCGAACGTCTAGACCTGAAAAAAAACAGGAATTTCAAATCTACATCTTTCTGACTATTGAATTCTGTTGTTTTCCCTGCAGCCATTTTTCTATAATCTCTCATTAGTACTCATTTTTCCCAATTATATTTTTCTTTGGCCAAACGGATTCCCTACTATCTCCCAAATGTCTCTCTATGTGTAGGCCTTCTGCTGAGACGATTGAATTGATTGTCACCTGCCCAGCCTTTTTTTATCGCCCACCAAGAGATGGGTCTCTGTTACTTGTGTTAGCAACAAGTAACAGAGAAACGCATTCAAAAATGGAATATTTCTAGGAAAAATATAACAAATTTCGATCCTGGCGTCTCAAAAACAAAGTTAAAACATCAGGAAAATCTAGCGAAAATGATTTTTCTGGAAACTGTTGGTAAACTTGAAACTTGAAAAATCTTACTTTCTGGAAACGATTATTTGAAAACTCCTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCCAAAATAAAATACCAAATA</pcr_primer_p1>
		<pcr_primer_p2>AGATAGTAGGGAATCCGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACCCAAAATAAAATACCAAATATGTTTTCTAGCCGTCCGAAAATTTATTGTTGTAAAATTGCAATTCAACTGCATAATTTTTCAAACTGTCGAACGTCTAGACCTGAAAAAAAACAGGAATTTCAAATCTACATCTTTCTGACTATTGAATTCTGTTGTTTTCCCTGCAGCCATTTTTCTATAATCTCTCATTAGTACTCATTTTTCCCAATTATATTTTTCTTTGGCCAAACGGATTCCCTACTATCT</canonical_amplicon>
		<polymorphic_amplicon>CACCCAAAATAAAATACCAAATATGTTTTCTAGCCGTCCGAAAATTTATTGTTGTARAATTGCAATTCAACTGCATAATTTTTCAAACTGTCGAACGTCTAGACCTGAAAAAAAACAGGAATTTCAAATCTACATCTTTCTGACTATTGAATTCTGTTGTTTTCCCTGCAGCCATTTTTCTATAATCTCTCATTAGTACTCATTTTTCCCAATTATATTTTTCTTTGGCCAAACGGATTCCCTACTATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33340</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>236491</contig_pos>
        <strand>+</strand>
        <context>TTCAACTGCA[C/T]AATTTTTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCTAGCCGTCCGAAAATTTATTGTTGTAAAATTGCAATTCAACTGCA</left_flank>
        <right_flank>AATTTTTCAAACTGTCGAACGTCTAGACCTGAAAAAAAACAGGAATTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGGCAGAGAGTGATGTAGGTATTACGGAAAATTAAGAGACCGTGCAGAGTACTTTGATAGTGTGTTGTGCAACAGGAGAAGATGACTATGGATGTTTGGACTAACTAAGAGTGACCAATTCTTATGAAGTAGATAGAACAAAAATGATAATATATGATACGATACCACAAAGATTTTCAGATATCCTGCATTGAATAGAGACACATGAAAAGATGAGATTCATAATTTTACTTTAATAAAAATAAATCTTAAGCGGAAAAATGTTTGAGAAAATTGTTTCTGATTTGAGATTTTTACCTCAGGATTTCAATTCACTGGCTTTCATACCAAAGAAAGCACGGTTAGCCTCTTGTCGTCAATATTACTGAGAAACTTTAGAAGTTTTGAATTTTTCGCCCGAGTCCGATGAATATTCAAGAGGCACCCAAAATAAAATACCAAATATGTTTTCTAGCCGTCCGAAAATTTATTGTTGTAAAATTGCAATTCAACTGCATAATTTTTCAAACTGTCGAACGTCTAGACCTGAAAAAAAACAGGAATTTCAAATCTACATCTTTCTGACTATTGAATTCTGTTGTTTTCCCTGCAGCCATTTTTCTATAATCTCTCATTAGTACTCATTTTTCCCAATTATATTTTTCTTTGGCCAAACGGATTCCCTACTATCTCCCAAATGTCTCTCTATGTGTAGGCCTTCTGCTGAGACGATTGAATTGATTGTCACCTGCCCAGCCTTTTTTTATCGCCCACCAAGAGATGGGTCTCTGTTACTTGTGTTAGCAACAAGTAACAGAGAAACGCATTCAAAAATGGAATATTTCTAGGAAAAATATAACAAATTTCGATCCTGGCGTCTCAAAAACAAAGTTAAAACATCAGGAAAATCTAGCGAAAATGATTTTTCTGGAAACTGTTGGTAAACTTGAAACTTGAAAAATCTTACTTTCTGGAAACGATTATTTGAAAACTCCTTTTTTTCGAATTTTCATTCAGA</canonical>
            <polymorphic>TTCTGGCAGAGAGTGATGTAGGTATTACGGAAAATTAAGAGACCGTGCAGAGTACTTTGATAGTGTGTTGTGCAACAGGAGAAGATGACTATGGATGTTTGGACTAACTAAGAGTGACCAATTCTTATGAAGTAGATAGAACAAAAATGATAATATATGATACGATACCACAAAGATTTTCAGATATCCTGCATTGAATAGAGACACATGAAAAGATGAGATTCATAATTTTACTTTAATAAAAATAAATCTTAAGCGGAAAAATGTTTGAGAAAATTGTTTCTGATTTGAGATTTTTACCTCAGGATTTCAATTCACTGGCTTTCATACCAAAGAAAGCACGGTTAGCCTCTTGTCGTCAATATTACTGAGAAACTTTAGAAGTTTTGAATTTTTCGCCCGAGTCCGATGAATATTCAAGAGGCACCCAAAATAAAATACCAAATATGTTTTCTAGCCGTCCGAAAATTTATTGTTGTAAAATTGCAATTCAACTGCAYAATTTTTCAAACTGTCGAACGTCTAGACCTGAAAAAAAACAGGAATTTCAAATCTACATCTTTCTGACTATTGAATTCTGTTGTTTTCCCTGCAGCCATTTTTCTATAATCTCTCATTAGTACTCATTTTTCCCAATTATATTTTTCTTTGGCCAAACGGATTCCCTACTATCTCCCAAATGTCTCTCTATGTGTAGGCCTTCTGCTGAGACGATTGAATTGATTGTCACCTGCCCAGCCTTTTTTTATCGCCCACCAAGAGATGGGTCTCTGTTACTTGTGTTAGCAACAAGTAACAGAGAAACGCATTCAAAAATGGAATATTTCTAGGAAAAATATAACAAATTTCGATCCTGGCGTCTCAAAAACAAAGTTAAAACATCAGGAAAATCTAGCGAAAATGATTTTTCTGGAAACTGTTGGTAAACTTGAAACTTGAAAAATCTTACTTTCTGGAAACGATTATTTGAAAACTCCTTTTTTTCGAATTTTCATTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCCAAAATAAAATACCAAATA</pcr_primer_p1>
		<pcr_primer_p2>AGATAGTAGGGAATCCGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACCCAAAATAAAATACCAAATATGTTTTCTAGCCGTCCGAAAATTTATTGTTGTAAAATTGCAATTCAACTGCATAATTTTTCAAACTGTCGAACGTCTAGACCTGAAAAAAAACAGGAATTTCAAATCTACATCTTTCTGACTATTGAATTCTGTTGTTTTCCCTGCAGCCATTTTTCTATAATCTCTCATTAGTACTCATTTTTCCCAATTATATTTTTCTTTGGCCAAACGGATTCCCTACTATCT</canonical_amplicon>
		<polymorphic_amplicon>CACCCAAAATAAAATACCAAATATGTTTTCTAGCCGTCCGAAAATTTATTGTTGTAAAATTGCAATTCAACTGCAYAATTTTTCAAACTGTCGAACGTCTAGACCTGAAAAAAAACAGGAATTTCAAATCTACATCTTTCTGACTATTGAATTCTGTTGTTTTCCCTGCAGCCATTTTTCTATAATCTCTCATTAGTACTCATTTTTCCCAATTATATTTTTCTTTGGCCAAACGGATTCCCTACTATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33341</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>237784</contig_pos>
        <strand>+</strand>
        <context>GATAGCCAGG[A/T]AAAAAAAACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAAACAAAAGATACGTAAGAATGTATGTTAGGTTGGGTAGATAGCCAGG</left_flank>
        <right_flank>AAAAAAAACCGAGGTAAATTACTATTACCTGTTATGGTGTGGAAGATTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATTTTCGAAAAATTACGGTCCTGGAAAAAAATTGAGATATTTGGAGCAATAATTTTTTGAAATTCGATTGAAGATTTTCTTTTTTCCGAATTCATCAAATTGTGTGAATTTTTCAAAAGCCAAATTACAGATCTTTTGGCAGTTCACAGCAATTATCACCATTTCTGCTTTAATTACTACCTTGTACTAATCTTTGGTAATTTTCCATCCATCACACATTTTGAACACCTCAATATATCTGTCATACATCTCGCGTGGGCATAAGAAAACTGGTCGTCGAATCAGTTTTCAAAGACACTTTTCAGAAGATATAACGTCTGATTCTGCTCCACAACATGTCGATTACGGTATCTCTATATCCTCTGTGTCTGGATGTTCTTTCGCTGTCTCCAGGCTTTTTTTATTAATGGACCAACAGCAATCGGGGGGTCTTGCGACATCTTCTCTTCAAACAAAAGATACGTAAGAATGTATGTTAGGTTGGGTAGATAGCCAGGAAAAAAAAACCGAGGTAAATTACTATTACCTGTTATGGTGTGGAAGATTTCCAGACAGATAAGAGATTGTATGAATCCTGTTCCTATTGGGAACGAAAAACAGAAAATAAAAATCCAGTTGAAATTTGAAGATTTGGTAAAATATAAAATTGCATTAAAACAGTATTTGGAATTCAAGATCGATAAGAACGATTTTTTCCTTTGTGGAATATAACGAAATTATATGCTTACCAGTACTCTAATAATACAACTTTTATTTATTGCAAAAATTTCCAATTATTAAAAATTTTGAACATTATGTTTCTTTTTTTTTCTTTTTTTCAAACTATTTGCAATAGATTTTCAAATTTCATTCAATTATCCCAAAAATTTTCAATTTCACCAAAACGTTATTTGGAATTTTCAGAACATGTCGACTCGGACCTGCAACACTGTGAACTTGAATTTCTACAAATTTTCGTTTCACATGTCATTTTCCCATGGTTCTCCTAAATTTTTCGT</canonical>
            <polymorphic>TGATTTTCGAAAAATTACGGTCCTGGAAAAAAATTGAGATATTTGGAGCAATAATTTTTTGAAATTCGATTGAAGATTTTCTTTTTTCCGAATTCATCAAATTGTGTGAATTTTTCAAAAGCCAAATTACAGATCTTTTGGCAGTTCACAGCAATTATCACCATTTCTGCTTTAATTACTACCTTGTACTAATCTTTGGTAATTTTCCATCCATCACACATTTTGAACACCTCAATATATCTGTCATACATCTCGCGTGGGCATAAGAAAACTGGTCGTCGAATCAGTTTTCAAAGACACTTTTCAGAAGATATAACGTCTGATTCTGCTCCACAACATGTCGATTACGGTATCTCTATATCCTCTGTGTCTGGATGTTCTTTCGCTGTCTCCAGGCTTTTTTTATTAATGGACCAACAGCAATCGGGGGGTCTTGCGACATCTTCTCTTCAAACAAAAGATACGTAAGAATGTATGTTAGGTTGGGTAGATAGCCAGGWAAAAAAAACCGAGGTAAATTACTATTACCTGTTATGGTGTGGAAGATTTCCAGACAGATAAGAGATTGTATGAATCCTGTTCCTATTGGGAACGAAAAACAGAAAATAAAAATCCAGTTGAAATTTGAAGATTTGGTAAAATATAAAATTGCATTAAAACAGTATTTGGAATTCAAGATCGATAAGAACGATTTTTTCCTTTGTGGAATATAACGAAATTATATGCTTACCAGTACTCTAATAATACAACTTTTATTTATTGCAAAAATTTCCAATTATTAAAAATTTTGAACATTATGTTTCTTTTTTTTTCTTTTTTTCAAACTATTTGCAATAGATTTTCAAATTTCATTCAATTATCCCAAAAATTTTCAATTTCACCAAAACGTTATTTGGAATTTTCAGAACATGTCGACTCGGACCTGCAACACTGTGAACTTGAATTTCTACAAATTTTCGTTTCACATGTCATTTTCCCATGGTTCTCCTAAATTTTTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATGTCGATTACGGTATCTCTA</pcr_primer_p1>
		<pcr_primer_p2>TAGGAACAGGATTCATACAATCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATGTCGATTACGGTATCTCTATATCCTCTGTGTCTGGATGTTCTTTCGCTGTCTCCAGGCTTTTTTTATTAATGGACCAACAGCAATCGGGGGGTCTTGCGACATCTTCTCTTCAAACAAAAGATACGTAAGAATGTATGTTAGGTTGGGTAGATAGCCAGGAAAAAAAAACCGAGGTAAATTACTATTACCTGTTATGGTGTGGAAGATTTCCAGACAGATAAGAGATTGTATGAATCCTGTTCCTA</canonical_amplicon>
		<polymorphic_amplicon>ACATGTCGATTACGGTATCTCTATATCCTCTGTGTCTGGATGTTCTTTCGCTGTCTCCAGGCTTTTTTTATTAATGGACCAACAGCAATCGGGGGGTCTTGCGACATCTTCTCTTCAAACAAAAGATACGTAAGAATGTATGTTAGGTTGGGTAGATAGCCAGGWAAAAAAAACCGAGGTAAATTACTATTACCTGTTATGGTGTGGAAGATTTCCAGACAGATAAGAGATTGTATGAATCCTGTTCCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33342</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>247598</contig_pos>
        <strand>+</strand>
        <context>AGCATTTTTG[A/T]GATGCTACAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATTCATCTCAAAAATATTTTCCCAAGCATTTTTTCGGCAAGCATTTTTG</left_flank>
        <right_flank>GATGCTACAATTACGAAACTACAGAATCGACAGAAATTGCAAACAAATGG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTAATATTTATGAAATTTACAGAGGATACTGAGAATAACTATTTTCAATTGAAAGTGACCGGTTTCTGTTAGGCGAGTTTAGATGAACGGGGATGCATAAAAAATATCATATTCAGGATGTCCAACGAATACGAACAGTACATCGTAGCATCATATAATCGTGATGAGAAAACATCTGTAATCGAATTGATTCACAACTCCATTTTAAGTTTATTTGGCAATGGTATGCATTACGAATGGAGAACAACCCACAACTATAACCCCATTCCTCATCTCCAAAACATGAAAGCATATATCAGAATTAGCAATGAGAGCGCGGATTCTGTAACTGTTGAGAACGTTTTCTTGCAATCTCCAAAAATCAAGTTTGTGATTCTTTACGCTTCCAGTCTCACAGAACAATTTAATACGAATTCAAAAGTGTATCATGCAGAATCTAATGAAATCATTCATCTCAAAAATATTTTCCCAAGCATTTTTTCGGCAAGCATTTTTGTGATGCTACAATTACGAAACTACAGAATCGACAGAAATTGCAAACAAATGGAAATCTGGAGAAGCATTCGAAAAGCTGGATCTGTTACGTATTGAACTTCACTCCTTAAATTTTTCCCAGGGTGATGCAATTGGGGCTAAATATATTGATGAAACAAAAAGAGCACTGACGCACACTTTGCCCAAAATGTAAGAGATGTTGGTATATCGTGAAAACTCTAATAGGCCCTCTAGCTCTCGACGGTAAGTCATTTTATCTTGATTCCCAAAGATATAGGAAAGTAATACACTGTCAAAATACTTTTTTGTTTTATAATAAACTCTTTGGCAGTTGACCACTTTTGATATTTTTCACACAAAACGAGATATACGGCTTTAAAATTGGCAATTTGGGAGACATTATATTAAAGTTTTCACGATTGTATATTTTTTGAAGAGCTCTTTAATAATCTGTTGTTTTTCAGATGCAACTGGAATAATAACCAAATCACAAATTCGATCA</canonical>
            <polymorphic>GAATTAATATTTATGAAATTTACAGAGGATACTGAGAATAACTATTTTCAATTGAAAGTGACCGGTTTCTGTTAGGCGAGTTTAGATGAACGGGGATGCATAAAAAATATCATATTCAGGATGTCCAACGAATACGAACAGTACATCGTAGCATCATATAATCGTGATGAGAAAACATCTGTAATCGAATTGATTCACAACTCCATTTTAAGTTTATTTGGCAATGGTATGCATTACGAATGGAGAACAACCCACAACTATAACCCCATTCCTCATCTCCAAAACATGAAAGCATATATCAGAATTAGCAATGAGAGCGCGGATTCTGTAACTGTTGAGAACGTTTTCTTGCAATCTCCAAAAATCAAGTTTGTGATTCTTTACGCTTCCAGTCTCACAGAACAATTTAATACGAATTCAAAAGTGTATCATGCAGAATCTAATGAAATCATTCATCTCAAAAATATTTTCCCAAGCATTTTTTCGGCAAGCATTTTTGWGATGCTACAATTACGAAACTACAGAATCGACAGAAATTGCAAACAAATGGAAATCTGGAGAAGCATTCGAAAAGCTGGATCTGTTACGTATTGAACTTCACTCCTTAAATTTTTCCCAGGGTGATGCAATTGGGGCTAAATATATTGATGAAACAAAAAGAGCACTGACGCACACTTTGCCCAAAATGTAAGAGATGTTGGTATATCGTGAAAACTCTAATAGGCCCTCTAGCTCTCGACGGTAAGTCATTTTATCTTGATTCCCAAAGATATAGGAAAGTAATACACTGTCAAAATACTTTTTTGTTTTATAATAAACTCTTTGGCAGTTGACCACTTTTGATATTTTTCACACAAAACGAGATATACGGCTTTAAAATTGGCAATTTGGGAGACATTATATTAAAGTTTTCACGATTGTATATTTTTTGAAGAGCTCTTTAATAATCTGTTGTTTTTCAGATGCAACTGGAATAATAACCAAATCACAAATTCGATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>121 106 99 77 75 74 60 60 57 49 41 36 31 29 23 22 16 12 8 2 2</canonical_bands>
                <polymorphic_bands>174 121 106 77 74 60 60 57 49 41 36 31 29 23 22 16 12 8 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCAAGTTTGTGATTCTTTACG</pcr_primer_p1>
		<pcr_primer_p2>GGAAAAATTTAAGGAGTGAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AATCAAGTTTGTGATTCTTTACGCTTCCAGTCTCACAGAACAATTTAATACGAATTCAAAAGTGTATCATGCAGAATCTAATGAAATCATTCATCTCAAAAATATTTTCCCAAGCATTTTTTCGGCAAGCATTTTTGTGATGCTACAATTACGAAACTACAGAATCGACAGAAATTGCAAACAAATGGAAATCTGGAGAAGCATTCGAAAAGCTGGATCTGTTACGTATTGAACTTCACTCCTTAAATTTTTCC</canonical_amplicon>
		<polymorphic_amplicon>AATCAAGTTTGTGATTCTTTACGCTTCCAGTCTCACAGAACAATTTAATACGAATTCAAAAGTGTATCATGCAGAATCTAATGAAATCATTCATCTCAAAAATATTTTCCCAAGCATTTTTTCGGCAAGCATTTTTGWGATGCTACAATTACGAAACTACAGAATCGACAGAAATTGCAAACAAATGGAAATCTGGAGAAGCATTCGAAAAGCTGGATCTGTTACGTATTGAACTTCACTCCTTAAATTTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33343</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>253853</contig_pos>
        <strand></strand>
        <context>gggtgtcaaa[G/C]agatctagat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GCTCGACTGTCAAGTTTCCGAAAGCTTCGAAACTTTTGAAGGGTGTCAAA</left_flank>
        <right_flank>AGATCTAGATTAAAAATTTGGCATTTACAGAATGGGGGATCTTCTATTAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGCACTCTCAAATTTTGACATATTTTCAATGGTTTTTTCAACTCTTTTGAAAGCTGGTATCAATAAATTATTTGACAACATCTTTACTTAATTTCTTGTTCCAATCTTTCAGATTACGCAGCTGGCAAATTTTTTGAAGGCATTCAATGAAATGTGTAACCTTGAAGAAAAAATGAAAGTTTAAGACAATAAATAAAATGAACATGCCGTACACACATTATGAGAATGCTTCCAACCTGTCAAACTTGAGCTCATATATTTCAGTTCCTTAGAAATATATCAAAAAACGGTTAACAGACCAAATATTCTTGATATTATGATAAACATTTTGTCAGTACACCATTTTGTTATATCTTTCACAGAAAATAAGATACAGTAAAGGAATTAATATTGAAAAAAGCGTTTTAAATTTAATTTTTCGCCATTTTAACTATTTCTGAAGTCCGGAGCTCGACTGTCAAGTTTCCGAAAGCTTCGAAACTTTTGAAGGGTGTCAAAGAGATCTAGATTAAAAATTTGGCATTTACAGAATGGGGGATCTTCTATTAAAGTTTTTGAGGCATCTTACGAATAGGAACCAAAAAAATAATTTTTTCCGTTTTTCCATCAATTTATCTATCATTTTAAAGAGGGTTTCATTTATACTCAAAAATTTGTTTCTTGTTAAAAAAAACGAACGAGTATTATCATTAACATCAAAATCTTCTCTCTGACTGCCACCCGTTTCGAAAAAGGCTATGGGAAACTTAGGTATTCTGTAGTCTCTAGATTTCTCATCTTCCTCTGAATGACAGGCGTGTCATCGTTGGTTTAGGGGCATGGCGATAATATGTCGCGAAAAATTTGAAAACAGTTTTAGAGACGGTATATAAACGGTACAAATAAGTAAGTTGGACCATTCCATTGCTGTGAACCCCTCCCCCAAACCAAATATGGAAAACTTCCTTACTGTCTTCATTTTCCTCATCCGTCAACAAGTTGAAGAATTCCAAGCCAGTC</canonical>
            <polymorphic>CCGCACTCTCAAATTTTGACATATTTTCAATGGTTTTTTCAACTCTTTTGAAAGCTGGTATCAATAAATTATTTGACAACATCTTTACTTAATTTCTTGTTCCAATCTTTCAGATTACGCAGCTGGCAAATTTTTTGAAGGCATTCAATGAAATGTGTAACCTTGAAGAAAAAATGAAAGTTTAAGACAATAAATAAAATGAACATGCCGTACACACATTATGAGAATGCTTCCAACCTGTCAAACTTGAGCTCATATATTTCAGTTCCTTAGAAATATATCAAAAAACGGTTAACAGACCAAATATTCTTGATATTATGATAAACATTTTGTCAGTACACCATTTTGTTATATCTTTCACAGAAAATAAGATACAGTAAAGGAATTAATATTGAAAAAAGCGTTTTAAATTTAATTTTTCGCCATTTTAACTATTTCTGAAGTCCGGAGCTCGACTGTCAAGTTTCCGAAAGCTTCGAAACTTTTGAAGGGTGTCAAASAGATCTAGATTAAAAATTTGGCATTTACAGAATGGGGGATCTTCTATTAAAGTTTTTGAGGCATCTTACGAATAGGAACCAAAAAAATAATTTTTTCCGTTTTTCCATCAATTTATCTATCATTTTAAAGAGGGTTTCATTTATACTCAAAAATTTGTTTCTTGTTAAAAAAAACGAACGAGTATTATCATTAACATCAAAATCTTCTCTCTGACTGCCACCCGTTTCGAAAAAGGCTATGGGAAACTTAGGTATTCTGTAGTCTCTAGATTTCTCATCTTCCTCTGAATGACAGGCGTGTCATCGTTGGTTTAGGGGCATGGCGATAATATGTCGCGAAAAATTTGAAAACAGTTTTAGAGACGGTATATAAACGGTACAAATAAGTAAGTTGGACCATTCCATTGCTGTGAACCCCTCCCCCAAACCAAATATGGAAAACTTCCTTACTGTCTTCATTTTCCTCATCCGTCAACAAGTTGAAGAATTCCAAGCCAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCGTACACACATTATGAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATGCCTCAAAAACTTTAATAGAA</pcr_primer_p2>
		<pcr_amplicon_size>358</pcr_amplicon_size>
		<canonical_amplicon>GCCGTACACACATTATGAGAATGCTTCCAACCTGTCAAACTTGAGCTCATATATTTCAGTTCCTTAGAAATATATCAAAAAACGGTTAACAGACCAAATATTCTTGATATTATGATAAACATTTTGTCAGTACACCATTTTGTTATATCTTTCACAGAAAATAAGATACAGTAAAGGAATTAATATTGAAAAAAGCGTTTTAAATTTAATTTTTCGCCATTTTAACTATTTCTGAAGTCCGGAGCTCGACTGTCAAGTTTCCGAAAGCTTCGAAACTTTTGAAGGGTGTCAAAGAGATCTAGATTAAAAATTTGGCATTTACAGAATGGGGGATCTTCTATTAAAGTTTTTGAGGCAT</canonical_amplicon>
		<polymorphic_amplicon>GCCGTACACACATTATGAGAATGCTTCCAACCTGTCAAACTTGAGCTCATATATTTCAGTTCCTTAGAAATATATCAAAAAACGGTTAACAGACCAAATATTCTTGATATTATGATAAACATTTTGTCAGTACACCATTTTGTTATATCTTTCACAGAAAATAAGATACAGTAAAGGAATTAATATTGAAAAAAGCGTTTTAAATTTAATTTTTCGCCATTTTAACTATTTCTGAAGTCCGGAGCTCGACTGTCAAGTTTCCGAAAGCTTCGAAACTTTTGAAGGGTGTCAAASAGATCTAGATTAAAAATTTGGCATTTACAGAATGGGGGATCTTCTATTAAAGTTTTTGAGGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33344</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>261148</contig_pos>
        <strand></strand>
        <context>cgagaaattg[A/T]aaaggttcga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAATTTGTTAAAAATCTTCGAAGTTTTAACGAAAAATTTCGAGAAATTG</left_flank>
        <right_flank>AAAGGTTCGATACTTATTTAAAGACGGAATATATTCCATAATTTTTTACC</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAGTTAATACTGACAAACGCAGAAAAGTTCTTATTTAAAAAATGAAACCCGACAGGAAAGTTTATAATCTTAAATGAATTAATGTCACTCTCAATAATCGAGATTAAGCGTACTCTAATTTCTAAACGCCAGCAGTTTTTGTTTCTTATCAATCGAAGAAAAAAGTACGATTTCTTATAACTTGCTTCATGTCATCTTGCACTTTTTCATTGTGCGATAAGGTTTTTTCCTGAATATGACTTCGTGTCATAAGACGATTGTTCTCATATTGAGCATCACAAGTTTGTGAAAAAAAATCGTTCGTGACAATAAAAGTGACAACTGGTCATTGAATCGAAAAGGGTTGTAGCTGAAATTTGAAAGTGTGGTCAGTGAGAGTGTTAATTTTTGCCCGGTGTGTCGACCTGGCCCGGCACTGTCTGCCCGGGTCTGAAATTCCAAAGTTCTATAAATTTGTTAAAAATCTTCGAAGTTTTAACGAAAAATTTCGAGAAATTGAAAAGGTTCGATACTTATTTAAAGACGGAATATATTCCATAATTTTTTACCTTAAGTTATGCTTCAATTTAAGTTATGCTTCAATTTCAACATTCCAAGGGTCGGTATAGAGGAATACTTTGAACTCTGAGACTTTACGAGTCAGGCCATGTTTTGGATTTTTCCATTATTACATTACGAATTTCAATATTGTGATACACAAAATAGGAAGCCATAAATTGCTCACTGTAAACGACTTCTATTACCTTAATAAAATGATATTTTGCTTAAATTATGGTTGTTCTAACAAGTGTCTCGAGAGATTTTAGAACATGACATAGTTTTGAAGTAAATTTATAGATATCAGAAGCTTATAAATCTTCGAATGAAAAATTTCAAAACCTGTGTAGTAAGTACGCTACATCATGTACCAACTTGCTTTGATTATTGTCAGAGGTACTGAAGAATGTTCAACAAAAAAATAAACTTTCTAGATATTATGATGACCTGAATGACATTTGA</canonical>
            <polymorphic>TTAGTTAATACTGACAAACGCAGAAAAGTTCTTATTTAAAAAATGAAACCCGACAGGAAAGTTTATAATCTTAAATGAATTAATGTCACTCTCAATAATCGAGATTAAGCGTACTCTAATTTCTAAACGCCAGCAGTTTTTGTTTCTTATCAATCGAAGAAAAAAGTACGATTTCTTATAACTTGCTTCATGTCATCTTGCACTTTTTCATTGTGCGATAAGGTTTTTTCCTGAATATGACTTCGTGTCATAAGACGATTGTTCTCATATTGAGCATCACAAGTTTGTGAAAAAAAATCGTTCGTGACAATAAAAGTGACAACTGGTCATTGAATCGAAAAGGGTTGTAGCTGAAATTTGAAAGTGTGGTCAGTGAGAGTGTTAATTTTTGCCCGGTGTGTCGACCTGGCCCGGCACTGTCTGCCCGGGTCTGAAATTCCAAAGTTCTATAAATTTGTTAAAAATCTTCGAAGTTTTAACGAAAAATTTCGAGAAATTGWAAAGGTTCGATACTTATTTAAAGACGGAATATATTCCATAATTTTTTACCTTAAGTTATGCTTCAATTTAAGTTATGCTTCAATTTCAACATTCCAAGGGTCGGTATAGAGGAATACTTTGAACTCTGAGACTTTACGAGTCAGGCCATGTTTTGGATTTTTCCATTATTACATTACGAATTTCAATATTGTGATACACAAAATAGGAAGCCATAAATTGCTCACTGTAAACGACTTCTATTACCTTAATAAAATGATATTTTGCTTAAATTATGGTTGTTCTAACAAGTGTCTCGAGAGATTTTAGAACATGACATAGTTTTGAAGTAAATTTATAGATATCAGAAGCTTATAAATCTTCGAATGAAAAATTTCAAAACCTGTGTAGTAAGTACGCTACATCATGTACCAACTTGCTTTGATTATTGTCAGAGGTACTGAAGAATGTTCAACAAAAAAATAAACTTTCTAGATATTATGATGACCTGAATGACATTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>485 339 130 28 18</canonical_bands>
                <polymorphic_bands>485 339 130 46</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGCTGAAATTTGAAAGTGTG</pcr_primer_p1>
		<pcr_primer_p2>AATGTTGAAATTGAAGCATAACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTAGCTGAAATTTGAAAGTGTGGTCAGTGAGAGTGTTAATTTTTGCCCGGTGTGTCGACCTGGCCCGGCACTGTCTGCCCGGGTCTGAAATTCCAAAGTTCTATAAATTTGTTAAAAATCTTCGAAGTTTTAACGAAAAATTTCGAGAAATTGAAAAGGTTCGATACTTATTTAAAGACGGAATATATTCCATAATTTTTTACCTTAAGTTATGCTTCAATTTAAGTTATGCTTCAATTTCAACATT</canonical_amplicon>
		<polymorphic_amplicon>GTAGCTGAAATTTGAAAGTGTGGTCAGTGAGAGTGTTAATTTTTGCCCGGTGTGTCGACCTGGCCCGGCACTGTCTGCCCGGGTCTGAAATTCCAAAGTTCTATAAATTTGTTAAAAATCTTCGAAGTTTTAACGAAAAATTTCGAGAAATTGWAAAGGTTCGATACTTATTTAAAGACGGAATATATTCCATAATTTTTTACCTTAAGTTATGCTTCAATTTAAGTTATGCTTCAATTTCAACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33345</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>288256</contig_pos>
        <strand>+</strand>
        <context>AACAAAACCC[C/T]TTTAAATTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTGGTACGATACTTCAGCTTCAAAGCCGGTGAATAGAAAACAAAACCC</left_flank>
        <right_flank>TTTAAATTCAATTCCCTACCCATTCCAGCAATGCCGTTTCGACCCAAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGTTTTTTTAGCCTTCAAAGTTTGATGATTCGGCTTTTGATATCCTTATTTTTTATTGGATGCATTTCTGGTGCCGTCATTTGGTCTTTTGTAAATGGTACGAACTTTAATTCCTTAACGATAGTTTAATTCAAGTTTTCAGGTGAGTGCGGGGTGGACGATGAGTGTAGCAACGTACATCATCGGGATGCGTCGAAGAACTTTTCAATTTTCATCGACCAGTATTCCAAGAAAGAGGGAATGTACATCACTACGTATCGGCTTCCACAAGGATCAACTAATCAAGTACCAGTGAGTTTTAAGTTCGAATTTTTCCGCTGAACTTCATTTCAAACTTTTTAGAAACAAGAAGAGTATCAATCCTTCTGGTTCCAAAGCGACACTAATAAAACTCTGGTTCATCAAATCACCCCTACCGTAACCATTTACGCATTTGATCATCACGCTTATTGGTACGATACTTCAGCTTCAAAGCCGGTGAATAGAAAACAAAACCCATTTAAATTCAATTCCCTACCCATTCCAGCAATGCCGTTTCGACCCAAACATGAATTATTTGACATACATCAAAAACCTGGGAATGACCAATCTAGAACGACATCACTCTGAATTTGTTAGTTGGATACTATTTCTGGTTGAAAAGTAGGAAAGCTAAATTTCAGGAGGAGACTCATAATGGAGAAAAAGTCTTTGTGTATCAAGGAAATCCAAACGAGGTGTTGTTGACAAACGTTAATCAATCCGCTTTCTTGGTGACAGCGTACGCAGATGCAACGACAGGTGTGGCTTTCTTCTTAGGGTTTTACGGTTTCTTTTTGGGTTTTAGGGGTTTTTAGGGGTTTTCAAAAGTTCGTTGTTTTTTTTTGCAGTTTTAAGACGTTTAAGGGGTTTGTTCTGAGCTTTTCGTTTAAAAAATAGTCGTGCTCAAAAAGCTTTAATAATCGGAAAATATTAGTCCAGGCATTTTTTGTTAGTGGGGTCGCCTAAAAGGTTTTTTT</canonical>
            <polymorphic>TTCGTTTTTTTAGCCTTCAAAGTTTGATGATTCGGCTTTTGATATCCTTATTTTTTATTGGATGCATTTCTGGTGCCGTCATTTGGTCTTTTGTAAATGGTACGAACTTTAATTCCTTAACGATAGTTTAATTCAAGTTTTCAGGTGAGTGCGGGGTGGACGATGAGTGTAGCAACGTACATCATCGGGATGCGTCGAAGAACTTTTCAATTTTCATCGACCAGTATTCCAAGAAAGAGGGAATGTACATCACTACGTATCGGCTTCCACAAGGATCAACTAATCAAGTACCAGTGAGTTTTAAGTTCGAATTTTTCCGCTGAACTTCATTTCAAACTTTTTAGAAACAAGAAGAGTATCAATCCTTCTGGTTCCAAAGCGACACTAATAAAACTCTGGTTCATCAAATCACCCCTACCGTAACCATTTACGCATTTGATCATCACGCTTATTGGTACGATACTTCAGCTTCAAAGCCGGTGAATAGAAAACAAAACCCYTTTAAATTCAATTCCCTACCCATTCCAGCAATGCCGTTTCGACCCAAACATGAATTATTTGACATACATCAAAAACCTGGGAATGACCAATCTAGAACGACATCACTCTGAATTTGTTAGTTGGATACTATTTCTGGTTGAAAAGTAGGAAAGCTAAATTTCAGGAGGAGACTCATAATGGAGAAAAAGTCTTTGTGTATCAAGGAAATCCAAACGAGGTGTTGTTGACAAACGTTAATCAATCCGCTTTCTTGGTGACAGCGTACGCAGATGCAACGACAGGTGTGGCTTTCTTCTTAGGGTTTTACGGTTTCTTTTTGGGTTTTAGGGGTTTTTAGGGGTTTTCAAAAGTTCGTTGTTTTTTTTTGCAGTTTTAAGACGTTTAAGGGGTTTGTTCTGAGCTTTTCGTTTAAAAAATAGTCGTGCTCAAAAAGCTTTAATAATCGGAAAATATTAGTCCAGGCATTTTTTGTTAGTGGGGTCGCCTAAAAGGTTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTTAAAT</site>
                <isoschizomers>
                    <enzyme>SmiI</enzyme>
                    <enzyme>SwaI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGACACTAATAAAACTCTGGTTC</pcr_primer_p1>
		<pcr_primer_p2>ATCCAACTAACAAATTCAGAGTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CGACACTAATAAAACTCTGGTTCATCAAATCACCCCTACCGTAACCATTTACGCATTTGATCATCACGCTTATTGGTACGATACTTCAGCTTCAAAGCCGGTGAATAGAAAACAAAACCCATTTAAATTCAATTCCCTACCCATTCCAGCAATGCCGTTTCGACCCAAACATGAATTATTTGACATACATCAAAAACCTGGGAATGACCAATCTAGAACGACATCACTCTGAATTTGTTAGTTGGAT</canonical_amplicon>
		<polymorphic_amplicon>CGACACTAATAAAACTCTGGTTCATCAAATCACCCCTACCGTAACCATTTACGCATTTGATCATCACGCTTATTGGTACGATACTTCAGCTTCAAAGCCGGTGAATAGAAAACAAAACCCYTTTAAATTCAATTCCCTACCCATTCCAGCAATGCCGTTTCGACCCAAACATGAATTATTTGACATACATCAAAAACCTGGGAATGACCAATCTAGAACGACATCACTCTGAATTTGTTAGTTGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33346</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>352660</contig_pos>
        <strand>+</strand>
        <context>ACACCATTGC[C/T]TCAGGCGCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCACTTTGTTGCTTCATGCTCAGCAAACATTTGATACGCAACACCATTGC</left_flank>
        <right_flank>TCAGGCGCAGTTTAAAATGGAAAGTAAGACGATGGTGGATGGATGGTGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTTATGAAGACCGATATTGTCTGAGCCGTGAGTCCCAAAGGGAACATCACCGGTGATAGGACTGCGAAGTAGTAGGTTGCCCATTCGGATCGCTTTCTCATGTTTTCCAGGAAGAAAAGGAAGAAGGCAGTAAGAATTATAACAATATCCGAGCAAGCCAGAGCGAAGAGGTATCTGCAACATTCTTAGTGCTGAATTTTCCCTTTTTCGAAATGTTCTTGAATTCATGTTTTTGTTCCAGACAAAAACATACCAAAATATTTTCAATAATTTGACCTGTGTAAATATTTGTCCCCCTTGGAAAAAAATGTAAAACGTTATACAAAAAATGTTTATAGAAGCGTCTAGTGTTTCTTTTTGTTTCCTGTGCCTATTCCAAAAGAACAAAAATCGTGGAAACTCTATAAGGGACCCCCTGTGTGTGTGATAGTTTTCCTTTTGGTTCTTTCACTTTGTTGCTTCATGCTCAGCAAACATTTGATACGCAACACCATTGCCTCAGGCGCAGTTTAAAATGGAAAGTAAGACGATGGTGGATGGATGGTGAGAGAGTGAAAAAACTAACGATTTAAAGAAAAAATTTGAAACAAGGAACCGAGCCCAAAAAAAACCTAATTTCCGTTTTGTTCAGAAGCATTCCAGGAAAAATGTACATCAAAGTTCTGACTGTTGGTTGAATTTTGATAAAAATTTGTTTCGAAATTCGGAAGAATTTGAAAGTTCTATTTTATCAAACTTTCGGGATTCGGGAAATTATAGCTTTTGTCGGTGACTAGAAAACTATACATACCGTAAAACCTGTAATAGAAAGACACCCAGAATTTTTACTTGAAGCCAATTTATCTCGGTTCCTGTGATAGATATCCAAAAGTTGTCAACTAATAAACTGTTTGTCATGATATTATTGGTATTTTGCCTGTCGGCACATGTTCAAAATCTCTTAAAGGAACTGAGATAATTGTTCTCAAAATTGACAGTGTGGGAGCTCGTCTATTACA</canonical>
            <polymorphic>CTGTTATGAAGACCGATATTGTCTGAGCCGTGAGTCCCAAAGGGAACATCACCGGTGATAGGACTGCGAAGTAGTAGGTTGCCCATTCGGATCGCTTTCTCATGTTTTCCAGGAAGAAAAGGAAGAAGGCAGTAAGAATTATAACAATATCCGAGCAAGCCAGAGCGAAGAGGTATCTGCAACATTCTTAGTGCTGAATTTTCCCTTTTTCGAAATGTTCTTGAATTCATGTTTTTGTTCCAGACAAAAACATACCAAAATATTTTCAATAATTTGACCTGTGTAAATATTTGTCCCCCTTGGAAAAAAATGTAAAACGTTATACAAAAAATGTTTATAGAAGCGTCTAGTGTTTCTTTTTGTTTCCTGTGCCTATTCCAAAAGAACAAAAATCGTGGAAACTCTATAAGGGACCCCCTGTGTGTGTGATAGTTTTCCTTTTGGTTCTTTCACTTTGTTGCTTCATGCTCAGCAAACATTTGATACGCAACACCATTGCYTCAGGCGCAGTTTAAAATGGAAAGTAAGACGATGGTGGATGGATGGTGAGAGAGTGAAAAAACTAACGATTTAAAGAAAAAATTTGAAACAAGGAACCGAGCCCAAAAAAAACCTAATTTCCGTTTTGTTCAGAAGCATTCCAGGAAAAATGTACATCAAAGTTCTGACTGTTGGTTGAATTTTGATAAAAATTTGTTTCGAAATTCGGAAGAATTTGAAAGTTCTATTTTATCAAACTTTCGGGATTCGGGAAATTATAGCTTTTGTCGGTGACTAGAAAACTATACATACCGTAAAACCTGTAATAGAAAGACACCCAGAATTTTTACTTGAAGCCAATTTATCTCGGTTCCTGTGATAGATATCCAAAAGTTGTCAACTAATAAACTGTTTGTCATGATATTATTGGTATTTTGCCTGTCGGCACATGTTCAAAATCTCTTAAAGGAACTGAGATAATTGTTCTCAAAATTGACAGTGTGGGAGCTCGTCTATTACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCTNAGG</site>
                <isoschizomers>
                    <enzyme>AocI</enzyme>
                    <enzyme>AxyI</enzyme>
                    <enzyme>Bse21I</enzyme>
                    <enzyme>Bsu36I</enzyme>
                    <enzyme>CvnI</enzyme>
                    <enzyme>Eco81I</enzyme>
                    <enzyme>SauI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>452 281 164 48 32 23</canonical_bands>
                <polymorphic_bands>484 281 164 48 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGTGTGTGATAGTTTTCCTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCAGAACTTTGATGTACATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTGTGTGTGATAGTTTTCCTTTTGGTTCTTTCACTTTGTTGCTTCATGCTCAGCAAACATTTGATACGCAACACCATTGCCTCAGGCGCAGTTTAAAATGGAAAGTAAGACGATGGTGGATGGATGGTGAGAGAGTGAAAAAACTAACGATTTAAAGAAAAAATTTGAAACAAGGAACCGAGCCCAAAAAAAACCTAATTTCCGTTTTGTTCAGAAGCATTCCAGGAAAAATGTACATCAAAGTTCTGA</canonical_amplicon>
		<polymorphic_amplicon>GTGTGTGTGATAGTTTTCCTTTTGGTTCTTTCACTTTGTTGCTTCATGCTCAGCAAACATTTGATACGCAACACCATTGCYTCAGGCGCAGTTTAAAATGGAAAGTAAGACGATGGTGGATGGATGGTGAGAGAGTGAAAAAACTAACGATTTAAAGAAAAAATTTGAAACAAGGAACCGAGCCCAAAAAAAACCTAATTTCCGTTTTGTTCAGAAGCATTCCAGGAAAAATGTACATCAAAGTTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33347</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>380512</contig_pos>
        <strand>+</strand>
        <context>GTCGGGAATC[C/T]ATTTGGTARG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGAAGTATTCTGTTTTTGGCTCACAACCAAATAAAGTGGGTCGGGAATC</left_flank>
        <right_flank>ATTTGGTAGGCAGAGTTGAAAACATTCCTTATTTACTTTTATTTCAATTA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGGTAGAGGTATACATATTTGAAATTTGTCATTCTGTTTTTTTTTCAAAGAACATAAATTGCTGAAATTGGCAGATCTAAGGATTCTACCAAAGTGTTTTTCTCAGCACGAGAAAGAGAAAAACAGACTTGTCACTTTTGAAGTAGTCGTTTTTCAAGTTCTGCATAAAAAATTCGGGAATGGAAAGTAAAACGTGATGAGTTTTTATTTTGCTCCGCACGCACACTGGAAAATAAAATGTATCACCCACTTTTTAATTTCTCCCTTGTTCTTCCTTTCTTTTTTTAGAGAGTGTTTTTACAGACTAATTCAACTTGTCCTAGAAATCGAATATTTTCCGGGTTTTAGATGAAATTCAAGAATTTGTTTCCGAAGCGCTCATTCATTTTCTCATTTCCTTCTGTTTGTTTTTATTTTTCTTCCCTCAAGACTAATTTAATGTCATTCAAGAAGTATTCTGTTTTTGGCTCACAACCAAATAAAGTGGGTCGGGAATCCATTTGGTAGGCAGAGTTGAAAACATTCCTTATTTACTTTTATTTCAATTACCCAGTCGAAAAGTGCAGGTTTGAGGCTAGATGTCTGCTGAGCTTCAGGCAGTTTTTACTGCTTAAGGTATTCCAAATGAAAAAAAAAAAACGAAAATTGACACTTTGGGTCATTGAGATTGAACAGTACAGTACAGTACATGCGGTACATTATCTCCGCCTGTTTTTTAACTACCGGATAATTTTGTTGAATGCAACTTAAGATTGAAATATCAGTCTGATACATCATTCCTCAGATATCACATTGACATCAATAACATTAATAACTCAACATGGAGATGTATCCGGCGGCTGAAACTGAGCCAGGTGAATGACTTTTTCTTGGCATTCAAATAATATAAGTTTCGTCATGAACAGACACATACACTTCTAGTAATTTCCTTGTTTTAACTTGTTTCCTTGAATTGAAATTCATGATCAACAGATAATTCACATTTTGAGATTTCCTTT</canonical>
            <polymorphic>TTCGGTAGAGGTATACATATTTGAAATTTGTCATTCTGTTTTTTTTTCAAAGAACATAAATTGCTGAAATTGGCAGATCTAAGGATTCTACCAAAGTGTTTTTCTCAGCACGAGAAAGAGAAAAACAGACTTGTCACTTTTGAAGTAGTCGTTTTTCAAGTTCTGCATAAAAAATTCGGGAATGGAAAGTAAAACGTGATGAGTTTTTATTTTGCTCCGCACGCACACTGGAAAATAAAATGTATCACCCACTTTTTAATTTCTCCCTTGTTCTTCCTTTCTTTTTTTAGAGAGTGTTTTTACAGACTAATTCAACTTGTCCTAGAAATCGAATATTTTCCGGGTTTTAGATGAAATTCAAGAATTTGTTTCCGAAGCGCTCATTCATTTTCTCATTTCCTTCTGTTTGTTTTTATTTTTCTTCCCTCAAGACTAATTTAATGTCATTCAAGAAGTATTCTGTTTTTGGCTCACAACCAAATAAAGTGGGTCGGGAATCYATTTGGTAGGCAGAGTTGAAAACATTCCTTATTTACTTTTATTTCAATTACCCAGTCGAAAAGTGCAGGTTTGAGGCTAGATGTCTGCTGAGCTTCAGGCAGTTTTTACTGCTTAAGGTATTCCAAATGAAAAAAAAAAAACGAAAATTGACACTTTGGGTCATTGAGATTGAACAGTACAGTACAGTACATGCGGTACATTATCTCCGCCTGTTTTTTAACTACCGGATAATTTTGTTGAATGCAACTTAAGATTGAAATATCAGTCTGATACATCATTCCTCAGATATCACATTGACATCAATAACATTAATAACTCAACATGGAGATGTATCCGGCGGCTGAAACTGAGCCAGGTGAATGACTTTTTCTTGGCATTCAAATAATATAAGTTTCGTCATGAACAGACACATACACTTCTAGTAATTTCCTTGTTTTAACTTGTTTCCTTGAATTGAAATTCATGATCAACAGATAATTCACATTTTGAGATTTCCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTTATTTTTCTTCCCTCAAG</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTGTCAATTTTCGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTTTATTTTTCTTCCCTCAAGACTAATTTAATGTCATTCAAGAAGTATTCTGTTTTTGGCTCACAACCAAATAAAGTGGGTCGGGAATCCATTTGGTAGGCAGAGTTGAAAACATTCCTTATTTACTTTTATTTCAATTACCCAGTCGAAAAGTGCAGGTTTGAGGCTAGATGTCTGCTGAGCTTCAGGCAGTTTTTACTGCTTAAGGTATTCCAAATGAAAAAAAAAAAACGAAAATTGACACTTTG</canonical_amplicon>
		<polymorphic_amplicon>GTTTTTATTTTTCTTCCCTCAAGACTAATTTAATGTCATTCAAGAAGTATTCTGTTTTTGGCTCACAACCAAATAAAGTGGGTCGGGAATCYATTTGGTAGGCAGAGTTGAAAACATTCCTTATTTACTTTTATTTCAATTACCCAGTCGAAAAGTGCAGGTTTGAGGCTAGATGTCTGCTGAGCTTCAGGCAGTTTTTACTGCTTAAGGTATTCCAAATGAAAAAAAAAAAACGAAAATTGACACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33348</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>380521</contig_pos>
        <strand>+</strand>
        <context>CYATTTGGTA[A/G]GCAGAGTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGTTTTTGGCTCACAACCAAATAAAGTGGGTCGGGAATCCATTTGGTA</left_flank>
        <right_flank>GCAGAGTTGAAAACATTCCTTATTTACTTTTATTTCAATTACCCAGTCGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTATACATATTTGAAATTTGTCATTCTGTTTTTTTTTCAAAGAACATAAATTGCTGAAATTGGCAGATCTAAGGATTCTACCAAAGTGTTTTTCTCAGCACGAGAAAGAGAAAAACAGACTTGTCACTTTTGAAGTAGTCGTTTTTCAAGTTCTGCATAAAAAATTCGGGAATGGAAAGTAAAACGTGATGAGTTTTTATTTTGCTCCGCACGCACACTGGAAAATAAAATGTATCACCCACTTTTTAATTTCTCCCTTGTTCTTCCTTTCTTTTTTTAGAGAGTGTTTTTACAGACTAATTCAACTTGTCCTAGAAATCGAATATTTTCCGGGTTTTAGATGAAATTCAAGAATTTGTTTCCGAAGCGCTCATTCATTTTCTCATTTCCTTCTGTTTGTTTTTATTTTTCTTCCCTCAAGACTAATTTAATGTCATTCAAGAAGTATTCTGTTTTTGGCTCACAACCAAATAAAGTGGGTCGGGAATCCATTTGGTAGGCAGAGTTGAAAACATTCCTTATTTACTTTTATTTCAATTACCCAGTCGAAAAGTGCAGGTTTGAGGCTAGATGTCTGCTGAGCTTCAGGCAGTTTTTACTGCTTAAGGTATTCCAAATGAAAAAAAAAAAACGAAAATTGACACTTTGGGTCATTGAGATTGAACAGTACAGTACAGTACATGCGGTACATTATCTCCGCCTGTTTTTTAACTACCGGATAATTTTGTTGAATGCAACTTAAGATTGAAATATCAGTCTGATACATCATTCCTCAGATATCACATTGACATCAATAACATTAATAACTCAACATGGAGATGTATCCGGCGGCTGAAACTGAGCCAGGTGAATGACTTTTTCTTGGCATTCAAATAATATAAGTTTCGTCATGAACAGACACATACACTTCTAGTAATTTCCTTGTTTTAACTTGTTTCCTTGAATTGAAATTCATGATCAACAGATAATTCACATTTTGAGATTTCCTTTCACTCAAAC</canonical>
            <polymorphic>GGTATACATATTTGAAATTTGTCATTCTGTTTTTTTTTCAAAGAACATAAATTGCTGAAATTGGCAGATCTAAGGATTCTACCAAAGTGTTTTTCTCAGCACGAGAAAGAGAAAAACAGACTTGTCACTTTTGAAGTAGTCGTTTTTCAAGTTCTGCATAAAAAATTCGGGAATGGAAAGTAAAACGTGATGAGTTTTTATTTTGCTCCGCACGCACACTGGAAAATAAAATGTATCACCCACTTTTTAATTTCTCCCTTGTTCTTCCTTTCTTTTTTTAGAGAGTGTTTTTACAGACTAATTCAACTTGTCCTAGAAATCGAATATTTTCCGGGTTTTAGATGAAATTCAAGAATTTGTTTCCGAAGCGCTCATTCATTTTCTCATTTCCTTCTGTTTGTTTTTATTTTTCTTCCCTCAAGACTAATTTAATGTCATTCAAGAAGTATTCTGTTTTTGGCTCACAACCAAATAAAGTGGGTCGGGAATCCATTTGGTARGCAGAGTTGAAAACATTCCTTATTTACTTTTATTTCAATTACCCAGTCGAAAAGTGCAGGTTTGAGGCTAGATGTCTGCTGAGCTTCAGGCAGTTTTTACTGCTTAAGGTATTCCAAATGAAAAAAAAAAAACGAAAATTGACACTTTGGGTCATTGAGATTGAACAGTACAGTACAGTACATGCGGTACATTATCTCCGCCTGTTTTTTAACTACCGGATAATTTTGTTGAATGCAACTTAAGATTGAAATATCAGTCTGATACATCATTCCTCAGATATCACATTGACATCAATAACATTAATAACTCAACATGGAGATGTATCCGGCGGCTGAAACTGAGCCAGGTGAATGACTTTTTCTTGGCATTCAAATAATATAAGTTTCGTCATGAACAGACACATACACTTCTAGTAATTTCCTTGTTTTAACTTGTTTCCTTGAATTGAAATTCATGATCAACAGATAATTCACATTTTGAGATTTCCTTTCACTCAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTTATTTTTCTTCCCTCAAG</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTGTCAATTTTCGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTTTATTTTTCTTCCCTCAAGACTAATTTAATGTCATTCAAGAAGTATTCTGTTTTTGGCTCACAACCAAATAAAGTGGGTCGGGAATCCATTTGGTAGGCAGAGTTGAAAACATTCCTTATTTACTTTTATTTCAATTACCCAGTCGAAAAGTGCAGGTTTGAGGCTAGATGTCTGCTGAGCTTCAGGCAGTTTTTACTGCTTAAGGTATTCCAAATGAAAAAAAAAAAACGAAAATTGACACTTTG</canonical_amplicon>
		<polymorphic_amplicon>GTTTTTATTTTTCTTCCCTCAAGACTAATTTAATGTCATTCAAGAAGTATTCTGTTTTTGGCTCACAACCAAATAAAGTGGGTCGGGAATCCATTTGGTARGCAGAGTTGAAAACATTCCTTATTTACTTTTATTTCAATTACCCAGTCGAAAAGTGCAGGTTTGAGGCTAGATGTCTGCTGAGCTTCAGGCAGTTTTTACTGCTTAAGGTATTCCAAATGAAAAAAAAAAAACGAAAATTGACACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33349</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>380614</contig_pos>
        <strand>+</strand>
        <context>GCTTCAGGCA[C/G]TTTTTACTGC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCAGTCGAAAAGTGCAGGTTTGAGGCTAGATGTCTGCTGAGCTTCAGGCA</left_flank>
        <right_flank>TTTTTACTGCTTAAGGTATTCCAAATGAAAAAAAAAAAACGAAAATTGAC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCAGCACGAGAAAGAGAAAAACAGACTTGTCACTTTTGAAGTAGTCGTTTTTCAAGTTCTGCATAAAAAATTCGGGAATGGAAAGTAAAACGTGATGAGTTTTTATTTTGCTCCGCACGCACACTGGAAAATAAAATGTATCACCCACTTTTTAATTTCTCCCTTGTTCTTCCTTTCTTTTTTTAGAGAGTGTTTTTACAGACTAATTCAACTTGTCCTAGAAATCGAATATTTTCCGGGTTTTAGATGAAATTCAAGAATTTGTTTCCGAAGCGCTCATTCATTTTCTCATTTCCTTCTGTTTGTTTTTATTTTTCTTCCCTCAAGACTAATTTAATGTCATTCAAGAAGTATTCTGTTTTTGGCTCACAACCAAATAAAGTGGGTCGGGAATCCATTTGGTAGGCAGAGTTGAAAACATTCCTTATTTACTTTTATTTCAATTACCCAGTCGAAAAGTGCAGGTTTGAGGCTAGATGTCTGCTGAGCTTCAGGCAGTTTTTACTGCTTAAGGTATTCCAAATGAAAAAAAAAAAACGAAAATTGACACTTTGGGTCATTGAGATTGAACAGTACAGTACAGTACATGCGGTACATTATCTCCGCCTGTTTTTTAACTACCGGATAATTTTGTTGAATGCAACTTAAGATTGAAATATCAGTCTGATACATCATTCCTCAGATATCACATTGACATCAATAACATTAATAACTCAACATGGAGATGTATCCGGCGGCTGAAACTGAGCCAGGTGAATGACTTTTTCTTGGCATTCAAATAATATAAGTTTCGTCATGAACAGACACATACACTTCTAGTAATTTCCTTGTTTTAACTTGTTTCCTTGAATTGAAATTCATGATCAACAGATAATTCACATTTTGAGATTTCCTTTCACTCAAACATTAAAACATTTTCTTTCCTACAGAAGAAGTGCAATACTGAGTAGTAATTTCTGGAATGAAAATGTGAAAATAGATCATTAACTTCAGTCTGC</canonical>
            <polymorphic>TCTCAGCACGAGAAAGAGAAAAACAGACTTGTCACTTTTGAAGTAGTCGTTTTTCAAGTTCTGCATAAAAAATTCGGGAATGGAAAGTAAAACGTGATGAGTTTTTATTTTGCTCCGCACGCACACTGGAAAATAAAATGTATCACCCACTTTTTAATTTCTCCCTTGTTCTTCCTTTCTTTTTTTAGAGAGTGTTTTTACAGACTAATTCAACTTGTCCTAGAAATCGAATATTTTCCGGGTTTTAGATGAAATTCAAGAATTTGTTTCCGAAGCGCTCATTCATTTTCTCATTTCCTTCTGTTTGTTTTTATTTTTCTTCCCTCAAGACTAATTTAATGTCATTCAAGAAGTATTCTGTTTTTGGCTCACAACCAAATAAAGTGGGTCGGGAATCCATTTGGTAGGCAGAGTTGAAAACATTCCTTATTTACTTTTATTTCAATTACCCAGTCGAAAAGTGCAGGTTTGAGGCTAGATGTCTGCTGAGCTTCAGGCASTTTTTACTGCTTAAGGTATTCCAAATGAAAAAAAAAAAACGAAAATTGACACTTTGGGTCATTGAGATTGAACAGTACAGTACAGTACATGCGGTACATTATCTCCGCCTGTTTTTTAACTACCGGATAATTTTGTTGAATGCAACTTAAGATTGAAATATCAGTCTGATACATCATTCCTCAGATATCACATTGACATCAATAACATTAATAACTCAACATGGAGATGTATCCGGCGGCTGAAACTGAGCCAGGTGAATGACTTTTTCTTGGCATTCAAATAATATAAGTTTCGTCATGAACAGACACATACACTTCTAGTAATTTCCTTGTTTTAACTTGTTTCCTTGAATTGAAATTCATGATCAACAGATAATTCACATTTTGAGATTTCCTTTCACTCAAACATTAAAACATTTTCTTTCCTACAGAAGAAGTGCAATACTGAGTAGTAATTTCTGGAATGAAAATGTGAAAATAGATCATTAACTTCAGTCTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTTATTTTTCTTCCCTCAAG</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTGTCAATTTTCGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTTTATTTTTCTTCCCTCAAGACTAATTTAATGTCATTCAAGAAGTATTCTGTTTTTGGCTCACAACCAAATAAAGTGGGTCGGGAATCCATTTGGTAGGCAGAGTTGAAAACATTCCTTATTTACTTTTATTTCAATTACCCAGTCGAAAAGTGCAGGTTTGAGGCTAGATGTCTGCTGAGCTTCAGGCAGTTTTTACTGCTTAAGGTATTCCAAATGAAAAAAAAAAAACGAAAATTGACACTTTG</canonical_amplicon>
		<polymorphic_amplicon>GTTTTTATTTTTCTTCCCTCAAGACTAATTTAATGTCATTCAAGAAGTATTCTGTTTTTGGCTCACAACCAAATAAAGTGGGTCGGGAATCCATTTGGTAGGCAGAGTTGAAAACATTCCTTATTTACTTTTATTTCAATTACCCAGTCGAAAAGTGCAGGTTTGAGGCTAGATGTCTGCTGAGCTTCAGGCASTTTTTACTGCTTAAGGTATTCCAAATGAAAAAAAAAAAACGAAAATTGACACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33350</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>405314</contig_pos>
        <strand></strand>
        <context>AGTTTTCGTT[G/A]CGGAAATTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCCACCGTGATGAGGAGCGTTGTCGGGATCGAACCTGGAAAGTTTTCGTT</left_flank>
        <right_flank>CGGAAATTCCGTTCGGACCTGTTGAAATTTGTGAGCACTCACTTTCCGAG</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTTTCCATCGTCCAAATCTCCGCTCGTTTGATGTTTCGTCCACTCTCGCTCTTTTTTCTTAGCCTGAAGCCGCAAATTTTAATAGAAGAATTAAATATTGGCAAGATCATACCTCAAGCTGATCAATTACAGCAGCCAACTTTTTCGAAGGAACCTGCACCCTCTTCCACACTTTCTCGTACCCATCTGCATCATGTTCTGACATGTTAATTTCCTGAAACTTTATGAGTCAAATTAAATAAACTTCAAAATTCTACTCACCCGTAGTTTCTTGGCGTACTCTTGTTTAGCAATCTCTCTAGCTTTCTTCAATATATGCTTTGGAACTTGCTCTTTTGCAAAATCTGGCATTTGATGGACGTCATGACCTGCATCTAGTCGGAACGGACCACCAATTCCGCCAAGACCTGCGGTGTTGTACCCACCAGTACCACCCATCCATTGATTTCCACCGTGATGAGGAGCGTTGTCGGGATCGAACCTGGAAAGTTTTCGTTGCGGAAATTCCGTTCGGACCTGTTGAAATTTGTGAGCACTCACTTTCCGAGTTTCGGTTCCTCAAGTTTTTCCATATCAACATCATCTGGCTGTCTATCAAACTCCATTCTTAGATTGTGGTCATCTGATCCACCGGTCATCCGTTTCCAGTCGTCGAATGATTTTCCCAGTGTAGACCAGGACAGTTCGAACGATCTGATGAACCCTGTCATGTCTACAGTCATGACTTTCTCATCATCCCATGGAATAAGTTGGAAATGAGCTTTCGACATTTTCGCACCCCATGACCTGGATAATCAATTTGAACACTTGAAATATATACATTTAACTTACTCATACATTACAGGATTGGCACTTTGTGGTACTGGTACATAGCTGATCTTACTTGCGGCCAAGTCAATGCTTTCCAAAAATCCAGACGTTTGGTACGGGTCGATTTCTAAAAAATAACAAATAATTTATCACGAAAAATGTTCGAAAACTCACTTTCATCTATATAT</canonical>
            <polymorphic>AACTTTCCATCGTCCAAATCTCCGCTCGTTTGATGTTTCGTCCACTCTCGCTCTTTTTTCTTAGCCTGAAGCCGCAAATTTTAATAGAAGAATTAAATATTGGCAAGATCATACCTCAAGCTGATCAATTACAGCAGCCAACTTTTTCGAAGGAACCTGCACCCTCTTCCACACTTTCTCGTACCCATCTGCATCATGTTCTGACATGTTAATTTCCTGAAACTTTATGAGTCAAATTAAATAAACTTCAAAATTCTACTCACCCGTAGTTTCTTGGCGTACTCTTGTTTAGCAATCTCTCTAGCTTTCTTCAATATATGCTTTGGAACTTGCTCTTTTGCAAAATCTGGCATTTGATGGACGTCATGACCTGCATCTAGTCGGAACGGACCACCAATTCCGCCAAGACCTGCGGTGTTGTACCCACCAGTACCACCCATCCATTGATTTCCACCGTGATGAGGAGCGTTGTCGGGATCGAACCTGGAAAGTTTTCGTTRCGGAAATTCCGTTCGGACCTGTTGAAATTTGTGAGCACTCACTTTCCGAGTTTCGGTTCCTCAAGTTTTTCCATATCAACATCATCTGGCTGTCTATCAAACTCCATTCTTAGATTGTGGTCATCTGATCCACCGGTCATCCGTTTCCAGTCGTCGAATGATTTTCCCAGTGTAGACCAGGACAGTTCGAACGATCTGATGAACCCTGTCATGTCTACAGTCATGACTTTCTCATCATCCCATGGAATAAGTTGGAAATGAGCTTTCGACATTTTCGCACCCCATGACCTGGATAATCAATTTGAACACTTGAAATATATACATTTAACTTACTCATACATTACAGGATTGGCACTTTGTGGTACTGGTACATAGCTGATCTTACTTGCGGCCAAGTCAATGCTTTCCAAAAATCCAGACGTTTGGTACGGGTCGATTTCTAAAAAATAACAAATAATTTATCACGAAAAATGTTCGAAAACTCACTTTCATCTATATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTCATGACCTGCATCTAGT</pcr_primer_p1>
		<pcr_primer_p2>AGAATGGAGTTTGATAGACAGC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGTCATGACCTGCATCTAGTCGGAACGGACCACCAATTCCGCCAAGACCTGCGGTGTTGTACCCACCAGTACCACCCATCCATTGATTTCCACCGTGATGAGGAGCGTTGTCGGGATCGAACCTGGAAAGTTTTCGTTGCGGAAATTCCGTTCGGACCTGTTGAAATTTGTGAGCACTCACTTTCCGAGTTTCGGTTCCTCAAGTTTTTCCATATCAACATCATCTGGCTGTCTATCAAACTCCATTCT</canonical_amplicon>
		<polymorphic_amplicon>CGTCATGACCTGCATCTAGTCGGAACGGACCACCAATTCCGCCAAGACCTGCGGTGTTGTACCCACCAGTACCACCCATCCATTGATTTCCACCGTGATGAGGAGCGTTGTCGGGATCGAACCTGGAAAGTTTTCGTTRCGGAAATTCCGTTCGGACCTGTTGAAATTTGTGAGCACTCACTTTCCGAGTTTCGGTTCCTCAAGTTTTTCCATATCAACATCATCTGGCTGTCTATCAAACTCCATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33351</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>442391</contig_pos>
        <strand>+</strand>
        <context>GTTGTTCTAT[C/G]TTCTTAGGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCTTCTGTTACATTTTCAGAGCAACAAGTATTTGGATTATGTTGTTCTAT</left_flank>
        <right_flank>TTCTTAGGAGAATTATGATCTTCATCATGTCATCTAATTTCGAACATGCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTATCAGTTGGAATTTCCCACATGACGTAAAACCTTCCCAATTCGTATGTTTTTCAACAAAAAAGGTTTGTTGAAGGTTGTAAACCTAATCAGTTAATGATATTCTACGGATTACTCTTATTTTCCCGAAAATAGAAATAATTTTTTGGCCTTCATAAAAAACAAAATATAGGATTTTGAATGTCAAATTAATGCATGAAAAAAAAACAATACAAAACAAGAAGAATTATGAGCTTCATAACAAAAGCTAATCTGACACATTATGCGCTACCGAAAATTTCAGAAACGGAAGTATAATCACAAAAATTTCACGTTTTTTTTGTGAACATGGCTTGTATAAAACTAGTAGATTCATTTTAAAACAGTTATGTCAAAAGCCTACAATGATAATAACGTTAGAACAATTCAAAAAGTCGAAATTTCATAATTTAAAACAAGCGAATTTTGGCTTCTGTTACATTTTCAGAGCAACAAGTATTTGGATTATGTTGTTCTATCTTCTTAGGAGAATTATGATCTTCATCATGTCATCTAATTTCGAACATGCACTTAAGGACTTCTGCTCACGCAACATAATTATTCAAGAAGAAGGAAGTGTCATTCAAAAAATGATTCCACATCCAATAATAATATTTTTGTATAATTTTCTAATAGGGAACAAATATTCTTCTCAGCAATACTTGACTCATTCATTACATCCCTATTTCTATGGTATGAAAAGATACAGAGTTGGTAGAAAAGATGTCCGCCTTCGCAATGTAAATAAAACAACAGCCTCAAAGGAAATGAAGATTTAGAAACAAATTGCAGAAAAGCGTAAAACGCCAATGAGCATTTTTTTTTCTCTTTAATTTACGTCACTTGATACCCTGACCTCTCGTCCCAACGGAAAATGTTGCAAATGAATTTGGAATTTTAGTAAAGTGTTCTCTGGATTTTTTTCCGAAAAAAACAAATCATTATTATTAGTGTTATCTTATCCGGAAAAATGACTTGCC</canonical>
            <polymorphic>AACTATCAGTTGGAATTTCCCACATGACGTAAAACCTTCCCAATTCGTATGTTTTTCAACAAAAAAGGTTTGTTGAAGGTTGTAAACCTAATCAGTTAATGATATTCTACGGATTACTCTTATTTTCCCGAAAATAGAAATAATTTTTTGGCCTTCATAAAAAACAAAATATAGGATTTTGAATGTCAAATTAATGCATGAAAAAAAAACAATACAAAACAAGAAGAATTATGAGCTTCATAACAAAAGCTAATCTGACACATTATGCGCTACCGAAAATTTCAGAAACGGAAGTATAATCACAAAAATTTCACGTTTTTTTTGTGAACATGGCTTGTATAAAACTAGTAGATTCATTTTAAAACAGTTATGTCAAAAGCCTACAATGATAATAACGTTAGAACAATTCAAAAAGTCGAAATTTCATAATTTAAAACAAGCGAATTTTGGCTTCTGTTACATTTTCAGAGCAACAAGTATTTGGATTATGTTGTTCTATSTTCTTAGGAGAATTATGATCTTCATCATGTCATCTAATTTCGAACATGCACTTAAGGACTTCTGCTCACGCAACATAATTATTCAAGAAGAAGGAAGTGTCATTCAAAAAATGATTCCACATCCAATAATAATATTTTTGTATAATTTTCTAATAGGGAACAAATATTCTTCTCAGCAATACTTGACTCATTCATTACATCCCTATTTCTATGGTATGAAAAGATACAGAGTTGGTAGAAAAGATGTCCGCCTTCGCAATGTAAATAAAACAACAGCCTCAAAGGAAATGAAGATTTAGAAACAAATTGCAGAAAAGCGTAAAACGCCAATGAGCATTTTTTTTTCTCTTTAATTTACGTCACTTGATACCCTGACCTCTCGTCCCAACGGAAAATGTTGCAAATGAATTTGGAATTTTAGTAAAGTGTTCTCTGGATTTTTTTCCGAAAAAAACAAATCATTATTATTAGTGTTATCTTATCCGGAAAAATGACTTGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTTTGGCTTCTGTTACATT</pcr_primer_p1>
		<pcr_primer_p2>ATGAGTCAAGTATTGCTGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATTTTGGCTTCTGTTACATTTTCAGAGCAACAAGTATTTGGATTATGTTGTTCTATCTTCTTAGGAGAATTATGATCTTCATCATGTCATCTAATTTCGAACATGCACTTAAGGACTTCTGCTCACGCAACATAATTATTCAAGAAGAAGGAAGTGTCATTCAAAAAATGATTCCACATCCAATAATAATATTTTTGTATAATTTTCTAATAGGGAACAAATATTCTTCTCAGCAATACTTGACTCAT</canonical_amplicon>
		<polymorphic_amplicon>GAATTTTGGCTTCTGTTACATTTTCAGAGCAACAAGTATTTGGATTATGTTGTTCTATSTTCTTAGGAGAATTATGATCTTCATCATGTCATCTAATTTCGAACATGCACTTAAGGACTTCTGCTCACGCAACATAATTATTCAAGAAGAAGGAAGTGTCATTCAAAAAATGATTCCACATCCAATAATAATATTTTTGTATAATTTTCTAATAGGGAACAAATATTCTTCTCAGCAATACTTGACTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33352</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>462483</contig_pos>
        <strand></strand>
        <context>caaagttttt[C/T]atctgattct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTAAAAAAATGAGGAATTTTTAAAAAATTCTGGGAATGCAAAGTTTTT</left_flank>
        <right_flank>ATCTGATTCTGTTTTATATCCTCCAAACTTTCCAAAGTGATTGCAAACTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAATTAAAATCGAGGGAGTTTACCGTAGAACCAAGTACAGCTTCTTCAAAGACCAACCACTCCCGGCTGAGGTCTACTGGTCCCTTCCATTTAACCAGATGCTCAAAAATCAACAGAGCTACGTTGCTTGCCATAAGATCTATGGAAACTTGAAGGTCAACCGAAAATAATTTTATGACACATTTTTGATTATTTGATTTATTTGTAAATAACAGTAATATTTTATGCTATTCTATTTTAAGATGAATAAATGTGTTTTTTCAAGCAATTTTGTTTTTTTCAAATTAATTTTGAAACTTCTGATAACAACAATTGTATGGGTTGAGCATTTTTATTTTATTTGACGCCGTCTGAGCTAGACACGTGGGACCTTTTGCATAAATGTTTTTTTGTACAAAACCGTACAAAACCGAGCTAAGAAATAGTGTCTTTCAGAAATCGGCAATTAATTAAAAAAATGAGGAATTTTTAAAAAATTCTGGGAATGCAAAGTTTTTCATCTGATTCTGTTTTATATCCTCCAAACTTTCCAAAGTGATTGCAAACTTGATCGCCAGGCTCCAGGCTCCTGAAAATCGCCAGATTGGCTGAAAATCAGTAAAACTAATGGAAGGTCTTCACCATCAGTTTTGATAGCGTTTATCTCCACGTTTTTCAACGATTAATAAAAGCAATCAACCGAAACAACCTTATAGATGGTACAGAAAATGTTTAATCAATTGACCAATATTTGAAAAAATACACAAAAAACTTGATTGAAAGTTCTGGGTTGTGTGACTCTTTGATTACAAGATTTAGGATATCTCAATGTTAATAGTCAAGAATGTTTCGCATTAAATATTTCCCGTTGAGAGTCCCTATCTTTTCGTTAAAATTTGGGCATCACTGATCGAGTCAAAAAACGAACAAAACGAAAAGTAGAATTCAATGTAATTTCTATTTCGTAGTGTTGATTTAAAATTTTTACAACTCGAAAATAATCTTGATCAAACCGGTGG</canonical>
            <polymorphic>CCAAATTAAAATCGAGGGAGTTTACCGTAGAACCAAGTACAGCTTCTTCAAAGACCAACCACTCCCGGCTGAGGTCTACTGGTCCCTTCCATTTAACCAGATGCTCAAAAATCAACAGAGCTACGTTGCTTGCCATAAGATCTATGGAAACTTGAAGGTCAACCGAAAATAATTTTATGACACATTTTTGATTATTTGATTTATTTGTAAATAACAGTAATATTTTATGCTATTCTATTTTAAGATGAATAAATGTGTTTTTTCAAGCAATTTTGTTTTTTTCAAATTAATTTTGAAACTTCTGATAACAACAATTGTATGGGTTGAGCATTTTTATTTTATTTGACGCCGTCTGAGCTAGACACGTGGGACCTTTTGCATAAATGTTTTTTTGTACAAAACCGTACAAAACCGAGCTAAGAAATAGTGTCTTTCAGAAATCGGCAATTAATTAAAAAAATGAGGAATTTTTAAAAAATTCTGGGAATGCAAAGTTTTTYATCTGATTCTGTTTTATATCCTCCAAACTTTCCAAAGTGATTGCAAACTTGATCGCCAGGCTCCAGGCTCCTGAAAATCGCCAGATTGGCTGAAAATCAGTAAAACTAATGGAAGGTCTTCACCATCAGTTTTGATAGCGTTTATCTCCACGTTTTTCAACGATTAATAAAAGCAATCAACCGAAACAACCTTATAGATGGTACAGAAAATGTTTAATCAATTGACCAATATTTGAAAAAATACACAAAAAACTTGATTGAAAGTTCTGGGTTGTGTGACTCTTTGATTACAAGATTTAGGATATCTCAATGTTAATAGTCAAGAATGTTTCGCATTAAATATTTCCCGTTGAGAGTCCCTATCTTTTCGTTAAAATTTGGGCATCACTGATCGAGTCAAAAAACGAACAAAACGAAAAGTAGAATTCAATGTAATTTCTATTTCGTAGTGTTGATTTAAAATTTTTACAACTCGAAAATAATCTTGATCAAACCGGTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGCATTTTTATTTTATTTGAC</pcr_primer_p1>
		<pcr_primer_p2>TGAAGACCTTCCATTAGTTTTAC</pcr_primer_p2>
		<pcr_amplicon_size>299</pcr_amplicon_size>
		<canonical_amplicon>TTGAGCATTTTTATTTTATTTGACGCCGTCTGAGCTAGACACGTGGGACCTTTTGCATAAATGTTTTTTTGTACAAAACCGTACAAAACCGAGCTAAGAAATAGTGTCTTTCAGAAATCGGCAATTAATTAAAAAAATGAGGAATTTTTAAAAAATTCTGGGAATGCAAAGTTTTTCATCTGATTCTGTTTTATATCCTCCAAACTTTCCAAAGTGATTGCAAACTTGATCGCCAGGCTCCAGGCTCCTGAAAATCGCCAGATTGGCTGAAAATCAGTAAAACTAATGGAAGGTCTTCA</canonical_amplicon>
		<polymorphic_amplicon>TTGAGCATTTTTATTTTATTTGACGCCGTCTGAGCTAGACACGTGGGACCTTTTGCATAAATGTTTTTTTGTACAAAACCGTACAAAACCGAGCTAAGAAATAGTGTCTTTCAGAAATCGGCAATTAATTAAAAAAATGAGGAATTTTTAAAAAATTCTGGGAATGCAAAGTTTTTYATCTGATTCTGTTTTATATCCTCCAAACTTTCCAAAGTGATTGCAAACTTGATCGCCAGGCTCCAGGCTCCTGAAAATCGCCAGATTGGCTGAAAATCAGTAAAACTAATGGAAGGTCTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33353</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>463367</contig_pos>
        <strand>+</strand>
        <context>GGTTGTCACT[C/G]AATTTGAGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTAGGGGAAATTACTGGAAAGTCCTTTTATGTTTACTGGCGGTTGTCACT</left_flank>
        <right_flank>AATTTGAGCAATCGATCGTTATCTGTTGTTTTACAACACAATATGAATGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACTGATCGAGTCAAAAAACGAACAAAACGAAAAGTAGAATTCAATGTAATTTCTATTTCGTAGTGTTGATTTAAAATTTTTACAACTCGAAAATAATCTTGATCAAACCGGTGGTCTTCGGTTCTCCGTTGTCCATTGAAATTTTTTAAAAATGGTAGAAGAGCTCCAATTCCGTTAACATCAGTACTCTCCACCGTTAATTCGCATCTGTGTTATTTTTTTCAGGAAACACTAGCTGTTTTTCGAAAATTTTAAACAATGTACAATGTCCGTCGCTATCTTTGGAAAGAAAAAACCGATGTGTATATAATTTCATAGTAGCAATTTTCAGTTCACTCGCAGATTTCAGCAAATTAGTAACTTCCGTTTCCTGAAATTTCACTTTTTCGGAATATACCATATTCAACATGTTTAACTGTTTTAATCATGAAATCAAGTCAAGTATGCCTAGGGGAAATTACTGGAAAGTCCTTTTATGTTTACTGGCGGTTGTCACTGAATTTGAGCAATCGATCGTTATCTGTTGTTTTACAACACAATATGAATGTCACAACATGATTTATTCGATTAGATTGCTCGGTGAATAGGCAAGTAATTATTTTTGTTTCCCAGGAGATGCTAGATAAGATACTGTGAAAGATGATCTGAAAATCTAGAAATTTTAAATTTTCATCCGCAACTGCTCGAAATTCACAACTTAAATTCCGAAATGGAACAAAGACATGCATACTTGATGTTCCAGTTGAACACTGAACATTAAGAGAACATTAAAGTCGTGTCGAACTAGTTTTCATCATCAATTTTGCTTTTTTCAGCTTCCTTTATGCAAATTCATGAGATGTTTCAGTGGTCAACAGCAACAACCCAAAACAAAACCGGAAATTTCTACTAAAATTCCAATTTAGCATTCAGATTTCCAGCAAAAACGTCGCCCATCTTTAAAGTCAGCGTCCCCTTTCTCTTTTGTGCTTTGACAATTCCATTGTTTGCCTCATTCT</canonical>
            <polymorphic>TCACTGATCGAGTCAAAAAACGAACAAAACGAAAAGTAGAATTCAATGTAATTTCTATTTCGTAGTGTTGATTTAAAATTTTTACAACTCGAAAATAATCTTGATCAAACCGGTGGTCTTCGGTTCTCCGTTGTCCATTGAAATTTTTTAAAAATGGTAGAAGAGCTCCAATTCCGTTAACATCAGTACTCTCCACCGTTAATTCGCATCTGTGTTATTTTTTTCAGGAAACACTAGCTGTTTTTCGAAAATTTTAAACAATGTACAATGTCCGTCGCTATCTTTGGAAAGAAAAAACCGATGTGTATATAATTTCATAGTAGCAATTTTCAGTTCACTCGCAGATTTCAGCAAATTAGTAACTTCCGTTTCCTGAAATTTCACTTTTTCGGAATATACCATATTCAACATGTTTAACTGTTTTAATCATGAAATCAAGTCAAGTATGCCTAGGGGAAATTACTGGAAAGTCCTTTTATGTTTACTGGCGGTTGTCACTSAATTTGAGCAATCGATCGTTATCTGTTGTTTTACAACACAATATGAATGTCACAACATGATTTATTCGATTAGATTGCTCGGTGAATAGGCAAGTAATTATTTTTGTTTCCCAGGAGATGCTAGATAAGATACTGTGAAAGATGATCTGAAAATCTAGAAATTTTAAATTTTCATCCGCAACTGCTCGAAATTCACAACTTAAATTCCGAAATGGAACAAAGACATGCATACTTGATGTTCCAGTTGAACACTGAACATTAAGAGAACATTAAAGTCGTGTCGAACTAGTTTTCATCATCAATTTTGCTTTTTTCAGCTTCCTTTATGCAAATTCATGAGATGTTTCAGTGGTCAACAGCAACAACCCAAAACAAAACCGGAAATTTCTACTAAAATTCCAATTTAGCATTCAGATTTCCAGCAAAAACGTCGCCCATCTTTAAAGTCAGCGTCCCCTTTCTCTTTTGTGCTTTGACAATTCCATTGTTTGCCTCATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>159 128 127 124 108 106 65 52 39 37 23 13 12 7</canonical_bands>
                <polymorphic_bands>283 128 127 108 106 65 52 39 37 23 13 12 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAGATTTCAGCAAATTAGTAAC</pcr_primer_p1>
		<pcr_primer_p2>CTATTCACCGAGCAATCTAATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCAGATTTCAGCAAATTAGTAACTTCCGTTTCCTGAAATTTCACTTTTTCGGAATATACCATATTCAACATGTTTAACTGTTTTAATCATGAAATCAAGTCAAGTATGCCTAGGGGAAATTACTGGAAAGTCCTTTTATGTTTACTGGCGGTTGTCACTGAATTTGAGCAATCGATCGTTATCTGTTGTTTTACAACACAATATGAATGTCACAACATGATTTATTCGATTAGATTGCTCGGTGAATAG</canonical_amplicon>
		<polymorphic_amplicon>GCAGATTTCAGCAAATTAGTAACTTCCGTTTCCTGAAATTTCACTTTTTCGGAATATACCATATTCAACATGTTTAACTGTTTTAATCATGAAATCAAGTCAAGTATGCCTAGGGGAAATTACTGGAAAGTCCTTTTATGTTTACTGGCGGTTGTCACTSAATTTGAGCAATCGATCGTTATCTGTTGTTTTACAACACAATATGAATGTCACAACATGATTTATTCGATTAGATTGCTCGGTGAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33354</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>466698</contig_pos>
        <strand></strand>
        <context>gaaaagcctg[G/A]agctcggctg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATATTCAAACATGTATGTTACAGTTAACTTTAAGCATTTTGAAAAGCCTG</left_flank>
        <right_flank>AGCTCGGCTGTCGAGTGTCGATCCACTTTAAAAACTTTGAAGGGTATAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGCAAAAAGTGCATTGTGTCTCCGTCTAGGCAGTACTCATACCCCTTCCCCCTTGACCTACAGTGACTTTAGATTTATCACTATGGATTTCGATCCAAAAAAAAGAGTGATTATGACTGTAGGAAGTGCGCGGCCTTGGATAGATATACTGGTGGTGTCGGTTGATAGAATACCGATAAAAGAGTAGAGAGAATTAGATAGGGTATCAGCAGAAAGAAAAACTGACGACACAACGACGTCCCGATTCGATCTCAATGTCCCTTTTGGCTATTTCCTGTTTTGTCGGACACTGCTTCGCCAAATCCCGAGACATCGGAAAAGAATGACAGGAACTTCTGATGAGTCGTGCTTCTTGCACGGAACACGTAACATTCTATGACTAATGAAACATTGATCTATCGAGTTCGAAAATCAAATTGACATTGATTCACATTACCGGTCAATAAGATATTCAAACATGTATGTTACAGTTAACTTTAAGCATTTTGAAAAGCCTGGAGCTCGGCTGTCGAGTGTCGATCCACTTTAAAAACTTTGAAGGGTATAAAACAAATTTAGATTGAAAACTTTGCATTCACAGAATGGTTTGAACACCTCCAATTACTGATTTCTGGAAGACACCACCTTCTGGCTCATTTTTGAACTGAAACGGGAAAAAAAATTTTTTTAGAAATCGGCGATTAGCTGAAAATCTAGGAGTTACAGAAACTCTGCAAACACAGAGTTATCAATCTATGTCTGTTCTACACCCTCCAAAGTTTTCAAAGTGATCCGACACTTAACAGCAAAGCTCTAGACTTCTGAAAATGGTCAAAGTCAATTGAAATGGACCGGTACTGTATTTTCAAAAAGAGAAAAGCCGTTGAAATACATTTTCCAATAGTGAACTGTTTTTAGGACCAAAGAAAGATAGCTTGCTGATCAAATTCCCATCATACAAAACCGCCGGAGTCCAATTCCACGAAGAGATCAGCGAGAATGGACACAAGTGCTTCAGA</canonical>
            <polymorphic>TTTGCAAAAAGTGCATTGTGTCTCCGTCTAGGCAGTACTCATACCCCTTCCCCCTTGACCTACAGTGACTTTAGATTTATCACTATGGATTTCGATCCAAAAAAAAGAGTGATTATGACTGTAGGAAGTGCGCGGCCTTGGATAGATATACTGGTGGTGTCGGTTGATAGAATACCGATAAAAGAGTAGAGAGAATTAGATAGGGTATCAGCAGAAAGAAAAACTGACGACACAACGACGTCCCGATTCGATCTCAATGTCCCTTTTGGCTATTTCCTGTTTTGTCGGACACTGCTTCGCCAAATCCCGAGACATCGGAAAAGAATGACAGGAACTTCTGATGAGTCGTGCTTCTTGCACGGAACACGTAACATTCTATGACTAATGAAACATTGATCTATCGAGTTCGAAAATCAAATTGACATTGATTCACATTACCGGTCAATAAGATATTCAAACATGTATGTTACAGTTAACTTTAAGCATTTTGAAAAGCCTGRAGCTCGGCTGTCGAGTGTCGATCCACTTTAAAAACTTTGAAGGGTATAAAACAAATTTAGATTGAAAACTTTGCATTCACAGAATGGTTTGAACACCTCCAATTACTGATTTCTGGAAGACACCACCTTCTGGCTCATTTTTGAACTGAAACGGGAAAAAAAATTTTTTTAGAAATCGGCGATTAGCTGAAAATCTAGGAGTTACAGAAACTCTGCAAACACAGAGTTATCAATCTATGTCTGTTCTACACCCTCCAAAGTTTTCAAAGTGATCCGACACTTAACAGCAAAGCTCTAGACTTCTGAAAATGGTCAAAGTCAATTGAAATGGACCGGTACTGTATTTTCAAAAAGAGAAAAGCCGTTGAAATACATTTTCCAATAGTGAACTGTTTTTAGGACCAAAGAAAGATAGCTTGCTGATCAAATTCCCATCATACAAAACCGCCGGAGTCCAATTCCACGAAGAGATCAGCGAGAATGGACACAAGTGCTTCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAAATTGACATTGATTCACA</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCTTTTTGAAAATACAGTACC</pcr_primer_p2>
		<pcr_amplicon_size>447</pcr_amplicon_size>
		<canonical_amplicon>ATCAAATTGACATTGATTCACATTACCGGTCAATAAGATATTCAAACATGTATGTTACAGTTAACTTTAAGCATTTTGAAAAGCCTGGAGCTCGGCTGTCGAGTGTCGATCCACTTTAAAAACTTTGAAGGGTATAAAACAAATTTAGATTGAAAACTTTGCATTCACAGAATGGTTTGAACACCTCCAATTACTGATTTCTGGAAGACACCACCTTCTGGCTCATTTTTGAACTGAAACGGGAAAAAAAATTTTTTTAGAAATCGGCGATTAGCTGAAAATCTAGGAGTTACAGAAACTCTGCAAACACAGAGTTATCAATCTATGTCTGTTCTACACCCTCCAAAGTTTTCAAAGTGATCCGACACTTAACAGCAAAGCTCTAGACTTCTGAAAATGGTCAAAGTCAATTGAAATGGACCGGTACTGTATTTTCAAAAAGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATCAAATTGACATTGATTCACATTACCGGTCAATAAGATATTCAAACATGTATGTTACAGTTAACTTTAAGCATTTTGAAAAGCCTGRAGCTCGGCTGTCGAGTGTCGATCCACTTTAAAAACTTTGAAGGGTATAAAACAAATTTAGATTGAAAACTTTGCATTCACAGAATGGTTTGAACACCTCCAATTACTGATTTCTGGAAGACACCACCTTCTGGCTCATTTTTGAACTGAAACGGGAAAAAAAATTTTTTTAGAAATCGGCGATTAGCTGAAAATCTAGGAGTTACAGAAACTCTGCAAACACAGAGTTATCAATCTATGTCTGTTCTACACCCTCCAAAGTTTTCAAAGTGATCCGACACTTAACAGCAAAGCTCTAGACTTCTGAAAATGGTCAAAGTCAATTGAAATGGACCGGTACTGTATTTTCAAAAAGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33355</snp_id>
        <super_contig>c008201137.Contig1</super_contig>
        <contig_pos>466805</contig_pos>
        <strand></strand>
        <context>ctccaattac[T/C]gatttctgga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTAGATTGAAAACTTTGCATTCACAGAATGGTTTGAACACCTCCAATTAC</left_flank>
        <right_flank>GATTTCTGGAAGACACCACCTTCTGGCTCATTTTTGAACTGAAACGGGAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGATTATGACTGTAGGAAGTGCGCGGCCTTGGATAGATATACTGGTGGTGTCGGTTGATAGAATACCGATAAAAGAGTAGAGAGAATTAGATAGGGTATCAGCAGAAAGAAAAACTGACGACACAACGACGTCCCGATTCGATCTCAATGTCCCTTTTGGCTATTTCCTGTTTTGTCGGACACTGCTTCGCCAAATCCCGAGACATCGGAAAAGAATGACAGGAACTTCTGATGAGTCGTGCTTCTTGCACGGAACACGTAACATTCTATGACTAATGAAACATTGATCTATCGAGTTCGAAAATCAAATTGACATTGATTCACATTACCGGTCAATAAGATATTCAAACATGTATGTTACAGTTAACTTTAAGCATTTTGAAAAGCCTGGAGCTCGGCTGTCGAGTGTCGATCCACTTTAAAAACTTTGAAGGGTATAAAACAAATTTAGATTGAAAACTTTGCATTCACAGAATGGTTTGAACACCTCCAATTACTGATTTCTGGAAGACACCACCTTCTGGCTCATTTTTGAACTGAAACGGGAAAAAAAATTTTTTTAGAAATCGGCGATTAGCTGAAAATCTAGGAGTTACAGAAACTCTGCAAACACAGAGTTATCAATCTATGTCTGTTCTACACCCTCCAAAGTTTTCAAAGTGATCCGACACTTAACAGCAAAGCTCTAGACTTCTGAAAATGGTCAAAGTCAATTGAAATGGACCGGTACTGTATTTTCAAAAAGAGAAAAGCCGTTGAAATACATTTTCCAATAGTGAACTGTTTTTAGGACCAAAGAAAGATAGCTTGCTGATCAAATTCCCATCATACAAAACCGCCGGAGTCCAATTCCACGAAGAGATCAGCGAGAATGGACACAAGTGCTTCAGAATGTCCGGAGGAAAAGTTGAGGTGAGATTTGTCTAACAAATTGCTCAAAAATAACACATGGGAACATTTTCAGGTGTACGCTCCAGGACTCGACGGATCCAAGAAGT</canonical>
            <polymorphic>AGTGATTATGACTGTAGGAAGTGCGCGGCCTTGGATAGATATACTGGTGGTGTCGGTTGATAGAATACCGATAAAAGAGTAGAGAGAATTAGATAGGGTATCAGCAGAAAGAAAAACTGACGACACAACGACGTCCCGATTCGATCTCAATGTCCCTTTTGGCTATTTCCTGTTTTGTCGGACACTGCTTCGCCAAATCCCGAGACATCGGAAAAGAATGACAGGAACTTCTGATGAGTCGTGCTTCTTGCACGGAACACGTAACATTCTATGACTAATGAAACATTGATCTATCGAGTTCGAAAATCAAATTGACATTGATTCACATTACCGGTCAATAAGATATTCAAACATGTATGTTACAGTTAACTTTAAGCATTTTGAAAAGCCTGGAGCTCGGCTGTCGAGTGTCGATCCACTTTAAAAACTTTGAAGGGTATAAAACAAATTTAGATTGAAAACTTTGCATTCACAGAATGGTTTGAACACCTCCAATTACYGATTTCTGGAAGACACCACCTTCTGGCTCATTTTTGAACTGAAACGGGAAAAAAAATTTTTTTAGAAATCGGCGATTAGCTGAAAATCTAGGAGTTACAGAAACTCTGCAAACACAGAGTTATCAATCTATGTCTGTTCTACACCCTCCAAAGTTTTCAAAGTGATCCGACACTTAACAGCAAAGCTCTAGACTTCTGAAAATGGTCAAAGTCAATTGAAATGGACCGGTACTGTATTTTCAAAAAGAGAAAAGCCGTTGAAATACATTTTCCAATAGTGAACTGTTTTTAGGACCAAAGAAAGATAGCTTGCTGATCAAATTCCCATCATACAAAACCGCCGGAGTCCAATTCCACGAAGAGATCAGCGAGAATGGACACAAGTGCTTCAGAATGTCCGGAGGAAAAGTTGAGGTGAGATTTGTCTAACAAATTGCTCAAAAATAACACATGGGAACATTTTCAGGTGTACGCTCCAGGACTCGACGGATCCAAGAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAAATTGACATTGATTCACA</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCTTTTTGAAAATACAGTACC</pcr_primer_p2>
		<pcr_amplicon_size>447</pcr_amplicon_size>
		<canonical_amplicon>ATCAAATTGACATTGATTCACATTACCGGTCAATAAGATATTCAAACATGTATGTTACAGTTAACTTTAAGCATTTTGAAAAGCCTGGAGCTCGGCTGTCGAGTGTCGATCCACTTTAAAAACTTTGAAGGGTATAAAACAAATTTAGATTGAAAACTTTGCATTCACAGAATGGTTTGAACACCTCCAATTACTGATTTCTGGAAGACACCACCTTCTGGCTCATTTTTGAACTGAAACGGGAAAAAAAATTTTTTTAGAAATCGGCGATTAGCTGAAAATCTAGGAGTTACAGAAACTCTGCAAACACAGAGTTATCAATCTATGTCTGTTCTACACCCTCCAAAGTTTTCAAAGTGATCCGACACTTAACAGCAAAGCTCTAGACTTCTGAAAATGGTCAAAGTCAATTGAAATGGACCGGTACTGTATTTTCAAAAAGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATCAAATTGACATTGATTCACATTACCGGTCAATAAGATATTCAAACATGTATGTTACAGTTAACTTTAAGCATTTTGAAAAGCCTGGAGCTCGGCTGTCGAGTGTCGATCCACTTTAAAAACTTTGAAGGGTATAAAACAAATTTAGATTGAAAACTTTGCATTCACAGAATGGTTTGAACACCTCCAATTACYGATTTCTGGAAGACACCACCTTCTGGCTCATTTTTGAACTGAAACGGGAAAAAAAATTTTTTTAGAAATCGGCGATTAGCTGAAAATCTAGGAGTTACAGAAACTCTGCAAACACAGAGTTATCAATCTATGTCTGTTCTACACCCTCCAAAGTTTTCAAAGTGATCCGACACTTAACAGCAAAGCTCTAGACTTCTGAAAATGGTCAAAGTCAATTGAAATGGACCGGTACTGTATTTTCAAAAAGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33356</snp_id>
        <super_contig>c008201344.Contig1</super_contig>
        <contig_pos>17188</contig_pos>
        <strand></strand>
        <context>CAAACCGCCC[G/A]TCCTCACTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATGATGATAGAAAAAAGAAGAAGAAGAAGACGAAAGACAACAAACCGCCC</left_flank>
        <right_flank>TCCTCACTGGCCTAGTCCCGGCGACAAAGTTTGCAAGAACGGGGGGAGGC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATCACCTGAGAAAACCTTTTCCTATTTCACATTCCTCAGAGACGCTGAGAAGTAGAAACAAATAAGAAGTAAAAAGAAACTTAATGTTGTCACCTTCTTTTGCGCCTAACTTCCATTCATTTTCTCTTACTTGATTATTGTCGAAAGTGTCGGTTGTTTATCCAATACCTCTTACATTTTATGATATGGAAGGGAAGACAAAAAAAGAAGGCTAATTGGCGGTGGAGGTTAATTTGGAATAGGCATCTGTATGGGGAGAGGGTGTGGTATAAAAAGTGTCAAATCGAATTCAAATTGAATGAAACAAAACGAAATGATGAAAAGACAGAAGAAGACGAAGAAACCCCACGCCATTCCTAAACATTCTTCGAAGAGAGAGATTTCGAGAAAAAAAGAAGATAAGAAAAGCGTCGTGTTGCCATAGAAGGCGTCGAAAGCCTTGTTTAAATGATGATAGAAAAAAGAAGAAGAAGAAGACGAAAGACAACAAACCGCCCGTCCTCACTGGCCTAGTCCCGGCGACAAAGTTTGCAAGAACGGGGGGAGGCCCATTATACAATGATTCATTTCACGCTAGTATCTTCTCAACGATTCAATTTGGTTTCGTCTCTATTCAGGTCCAGAAAAAAACGGAACGCTGGATGTGTTGGAATGAATGGGCATGACGAATTGAGACGAGAATTATGGAGGAAAATGTGGATATGTCATCCAAGTAGATATACTTTGTCATAAAGACATTTCAAGATCAAAGTTTGCAGAAGTTTGTTTCTTCTAAACTGGGGAACTCTAACAATGACCAACGGATGCCAGAGAGAGAGATCTTAAACCAAATACTGGCAAATTGGAACATTGCATTGCAATTGAGTGTGAATAATTCTCGAAATTGCGTGACTCTCGGTCTTGAAACACTCCGGTTCTTCTATTTATTTTTTTCTGGAATTTCGGAATAATTCCGGTTCAATTATGCAATAATGATGACAAGTAACCGAGAAAAGAAA</canonical>
            <polymorphic>TGATCACCTGAGAAAACCTTTTCCTATTTCACATTCCTCAGAGACGCTGAGAAGTAGAAACAAATAAGAAGTAAAAAGAAACTTAATGTTGTCACCTTCTTTTGCGCCTAACTTCCATTCATTTTCTCTTACTTGATTATTGTCGAAAGTGTCGGTTGTTTATCCAATACCTCTTACATTTTATGATATGGAAGGGAAGACAAAAAAAGAAGGCTAATTGGCGGTGGAGGTTAATTTGGAATAGGCATCTGTATGGGGAGAGGGTGTGGTATAAAAAGTGTCAAATCGAATTCAAATTGAATGAAACAAAACGAAATGATGAAAAGACAGAAGAAGACGAAGAAACCCCACGCCATTCCTAAACATTCTTCGAAGAGAGAGATTTCGAGAAAAAAAGAAGATAAGAAAAGCGTCGTGTTGCCATAGAAGGCGTCGAAAGCCTTGTTTAAATGATGATAGAAAAAAGAAGAAGAAGAAGACGAAAGACAACAAACCGCCCRTCCTCACTGGCCTAGTCCCGGCGACAAAGTTTGCAAGAACGGGGGGAGGCCCATTATACAATGATTCATTTCACGCTAGTATCTTCTCAACGATTCAATTTGGTTTCGTCTCTATTCAGGTCCAGAAAAAAACGGAACGCTGGATGTGTTGGAATGAATGGGCATGACGAATTGAGACGAGAATTATGGAGGAAAATGTGGATATGTCATCCAAGTAGATATACTTTGTCATAAAGACATTTCAAGATCAAAGTTTGCAGAAGTTTGTTTCTTCTAAACTGGGGAACTCTAACAATGACCAACGGATGCCAGAGAGAGAGATCTTAAACCAAATACTGGCAAATTGGAACATTGCATTGCAATTGAGTGTGAATAATTCTCGAAATTGCGTGACTCTCGGTCTTGAAACACTCCGGTTCTTCTATTTATTTTTTTCTGGAATTTCGGAATAATTCCGGTTCAATTATGCAATAATGATGACAAGTAACCGAGAAAAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGAGAGAGATTTCGAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTGAATAGAGACGAAACCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAGAGAGAGATTTCGAGAAAAAAAGAAGATAAGAAAAGCGTCGTGTTGCCATAGAAGGCGTCGAAAGCCTTGTTTAAATGATGATAGAAAAAAGAAGAAGAAGAAGACGAAAGACAACAAACCGCCCGTCCTCACTGGCCTAGTCCCGGCGACAAAGTTTGCAAGAACGGGGGGAGGCCCATTATACAATGATTCATTTCACGCTAGTATCTTCTCAACGATTCAATTTGGTTTCGTCTCTATTCAG</canonical_amplicon>
		<polymorphic_amplicon>GAAGAGAGAGATTTCGAGAAAAAAAGAAGATAAGAAAAGCGTCGTGTTGCCATAGAAGGCGTCGAAAGCCTTGTTTAAATGATGATAGAAAAAAGAAGAAGAAGAAGACGAAAGACAACAAACCGCCCRTCCTCACTGGCCTAGTCCCGGCGACAAAGTTTGCAAGAACGGGGGGAGGCCCATTATACAATGATTCATTTCACGCTAGTATCTTCTCAACGATTCAATTTGGTTTCGTCTCTATTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33357</snp_id>
        <super_contig>c008201344.Contig1</super_contig>
        <contig_pos>26790</contig_pos>
        <strand>+</strand>
        <context>AAAGTCTTGA[A/G]AAAATTTAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCACCTTGGGCTGGTCACTAAACCTTGAGCCGGTCCCTAAAAGTCTTGA</left_flank>
        <right_flank>AAAATTTAAGCCCGGCCCGTTGCAAGTATGCAATTTTCCGACGGAACCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGGTTTTTATTCGCTTTCACCGTAGTTCTGGAAGGAAGGCACCCACAATTTAGTGGGGCGTTGGCAAATAGTCATCGATAACAATGGTCATTACCTTCAATTTATACGACATCGTTTTGACCTTTTTTACTTTGAATGTATCTGACACTAAAAATGACGGGAACTTTCCAAACAACCTAATAGATATTCTTGTTTCTTTTCGGATTTGGCGTTTTCGGACTCAACTTTCGAAAAATTAGGTTATGAAAAATCATTAATTGAATACTGAAACTTAAGAGAAAACTTTTTACCAAAACTAAATTTTCCATACTTGAAAAATCTGGGTCCCGCCAGTGGGCCTAGCCGGGCTGGGCCAGATTTTCAGGGCCCGGGGTTTTTCACAATTGGAGAAAATTGGAAATTTCAAAATTTTTCTCCAATTTTGTTGTATTGACCCTAATTTTTTAAACTCACCTTGGGCTGGTCACTAAACCTTGAGCCGGTCCCTAAAAGTCTTGAGAAAATTTAAGCCCGGCCCGTTGCAAGTATGCAATTTTCCGACGGAACCAATAGTAAGGAGGTCTAAAAAATCGGTGTCCAAAAAATCTCCCCTGTAACTCAATTCACAAATCCTCCCGGCCTTTTAATCCTCTGAAAATCTCTTTTTTATGCATCCCCCTATCTATAAAAAATCGATTCTACCCTCTCCGGTTTTCGGATGATGCCACGTCGTCTGTTCTCTTTTGCATAAAAAACACCGAACACCAAGTATGGCTGAATGTCGTCCTCGTGGCTTTTCCTCCCTCTCTCCGATTCTGCAAACACTATACAAACAATATGATCTTTTGCCACACACTTTTTCTTCTCTTTTTTAGTTTCATTTTTGCAGAAGCAGTTCTCACTCGGATCGACCAACCACAATGAGAAACTGGCCACTTTTCGTATTCCTTATCTGCCTGGTATTTAGTTCTGAATTGTGACTATTCTTAAAGATGTTTTCAGGTTCTCTTTTTCTATGCC</canonical>
            <polymorphic>TGGGTTTTTATTCGCTTTCACCGTAGTTCTGGAAGGAAGGCACCCACAATTTAGTGGGGCGTTGGCAAATAGTCATCGATAACAATGGTCATTACCTTCAATTTATACGACATCGTTTTGACCTTTTTTACTTTGAATGTATCTGACACTAAAAATGACGGGAACTTTCCAAACAACCTAATAGATATTCTTGTTTCTTTTCGGATTTGGCGTTTTCGGACTCAACTTTCGAAAAATTAGGTTATGAAAAATCATTAATTGAATACTGAAACTTAAGAGAAAACTTTTTACCAAAACTAAATTTTCCATACTTGAAAAATCTGGGTCCCGCCAGTGGGCCTAGCCGGGCTGGGCCAGATTTTCAGGGCCCGGGGTTTTTCACAATTGGAGAAAATTGGAAATTTCAAAATTTTTCTCCAATTTTGTTGTATTGACCCTAATTTTTTAAACTCACCTTGGGCTGGTCACTAAACCTTGAGCCGGTCCCTAAAAGTCTTGARAAAATTTAAGCCCGGCCCGTTGCAAGTATGCAATTTTCCGACGGAACCAATAGTAAGGAGGTCTAAAAAATCGGTGTCCAAAAAATCTCCCCTGTAACTCAATTCACAAATCCTCCCGGCCTTTTAATCCTCTGAAAATCTCTTTTTTATGCATCCCCCTATCTATAAAAAATCGATTCTACCCTCTCCGGTTTTCGGATGATGCCACGTCGTCTGTTCTCTTTTGCATAAAAAACACCGAACACCAAGTATGGCTGAATGTCGTCCTCGTGGCTTTTCCTCCCTCTCTCCGATTCTGCAAACACTATACAAACAATATGATCTTTTGCCACACACTTTTTCTTCTCTTTTTTAGTTTCATTTTTGCAGAAGCAGTTCTCACTCGGATCGACCAACCACAATGAGAAACTGGCCACTTTTCGTATTCCTTATCTGCCTGGTATTTAGTTCTGAATTGTGACTATTCTTAAAGATGTTTTCAGGTTCTCTTTTTCTATGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>505 272 202 21</canonical_bands>
                <polymorphic_bands>526 272 202</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATTTTGTTGTATTGACCCTAA</pcr_primer_p1>
		<pcr_primer_p2>TATAGATAGGGGGATGCATAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAATTTTGTTGTATTGACCCTAATTTTTTAAACTCACCTTGGGCTGGTCACTAAACCTTGAGCCGGTCCCTAAAAGTCTTGAGAAAATTTAAGCCCGGCCCGTTGCAAGTATGCAATTTTCCGACGGAACCAATAGTAAGGAGGTCTAAAAAATCGGTGTCCAAAAAATCTCCCCTGTAACTCAATTCACAAATCCTCCCGGCCTTTTAATCCTCTGAAAATCTCTTTTTTATGCATCCCCCTATCTATA</canonical_amplicon>
		<polymorphic_amplicon>CAATTTTGTTGTATTGACCCTAATTTTTTAAACTCACCTTGGGCTGGTCACTAAACCTTGAGCCGGTCCCTAAAAGTCTTGARAAAATTTAAGCCCGGCCCGTTGCAAGTATGCAATTTTCCGACGGAACCAATAGTAAGGAGGTCTAAAAAATCGGTGTCCAAAAAATCTCCCCTGTAACTCAATTCACAAATCCTCCCGGCCTTTTAATCCTCTGAAAATCTCTTTTTTATGCATCCCCCTATCTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33361</snp_id>
        <super_contig>c008201393.Contig1</super_contig>
        <contig_pos>5495</contig_pos>
        <strand>-</strand>
        <context>AGAATTCGAT[A/C]TTATCCATGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTACATATTTTCCTCTTAGATTTTATCTCAAAATTTCCGGAGAATTCGAT</left_flank>
        <right_flank>TTATCCATGCCAAAATCTATTCCGATTTTTCTTTGGATTTTCTAAAGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTAGTTAATTAGTTAGTTTTGTATCTCTAATTTATTTTCAAACCTTTCTGAAATTTTTTAAAATTAACATACAAATTTTTATCAAATTTCCAATTGTCCCGATGTCCGACCCTCTATCACGTTGTCTTCAGAATTGCTGTCAACGAAATCGAAGATTCTGTCCTTGACGTCTTCTTCTTTTTTGTATGCGTACGTGATAATTGATAAGATAAATTGAGAAAAAAAAGTGATCACATTGTCCTTCAGATGACGTCACGTCTTCTGAAGATACACAGCGTGACATTTATCAGATACTTTTTAGTTAAAACATATTTTTCGATTCTTGTCAATTTGAAAGTTAGAAGTTCAGAAATTCCAAACATTCGAACTTGTAATTTTTGAAAATTTGAAAATTTCGGATTTTTAGAATTCAGAAGAATGTCTTCGAAAGTGTCTTACATCAAAATTTCTACATATTTTCCTCTTAGATTTTATCTCAAAATTTCCGGAGAATTCGATGTTATCCATGCCAAAATCTATTCCGATTTTTCTTTGGATTTTCTAAAGATTTTCGATTTTTGATTCATTTTCGATCCTGATCTTTTTCTGCAAATTTCCCATATGTTTTCTTGGAATTTTCTTTGTTTTCTGAAAGTTTCAAAAATTTCAGAATTTTCGAATTTCCAAACTTCTGAACTTTAGAATCTTAGAATTATTGAATTTTCCAACATTTTTTAACTGCCGTAAAACCTGTATTAGAAAGACCCCTTATGGAAGCGTCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGAAAATGGTAGGGCCTCCTGTAATAGAAGGGTCCCCTGTAATAGAAGGGCCCTCTGTGAGAAATGACCCCCCCCCTTCAAAATGTGTTTTGAAATCAGAAAATTTCATTACTTTTTCAGTGGAAAATATTCCGGGAACTCCACTATTTAATAGAAATTTTTTGAAACTCTATTTTCGAAGAAATTCTTGCTAAATTTTTGTGAAAT</canonical>
            <polymorphic>GTTAGTTAATTAGTTAGTTTTGTATCTCTAATTTATTTTCAAACCTTTCTGAAATTTTTTAAAATTAACATACAAATTTTTATCAAATTTCCAATTGTCCCGATGTCCGACCCTCTATCACGTTGTCTTCAGAATTGCTGTCAACGAAATCGAAGATTCTGTCCTTGACGTCTTCTTCTTTTTTGTATGCGTACGTGATAATTGATAAGATAAATTGAGAAAAAAAAGTGATCACATTGTCCTTCAGATGACGTCACGTCTTCTGAAGATACACAGCGTGACATTTATCAGATACTTTTTAGTTAAAACATATTTTTCGATTCTTGTCAATTTGAAAGTTAGAAGTTCAGAAATTCCAAACATTCGAACTTGTAATTTTTGAAAATTTGAAAATTTCGGATTTTTAGAATTCAGAAGAATGTCTTCGAAAGTGTCTTACATCAAAATTTCTACATATTTTCCTCTTAGATTTTATCTCAAAATTTCCGGAGAATTCGATMTTATCCATGCCAAAATCTATTCCGATTTTTCTTTGGATTTTCTAAAGATTTTCGATTTTTGATTCATTTTCGATCCTGATCTTTTTCTGCAAATTTCCCATATGTTTTCTTGGAATTTTCTTTGTTTTCTGAAAGTTTCAAAAATTTCAGAATTTTCGAATTTCCAAACTTCTGAACTTTAGAATCTTAGAATTATTGAATTTTCCAACATTTTTTAACTGCCGTAAAACCTGTATTAGAAAGACCCCTTATGGAAGCGTCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGAAAATGGTAGGGCCTCCTGTAATAGAAGGGTCCCCTGTAATAGAAGGGCCCTCTGTGAGAAATGACCCCCCCCCTTCAAAATGTGTTTTGAAATCAGAAAATTTCATTACTTTTTCAGTGGAAAATATTCCGGGAACTCCACTATTTAATAGAAATTTTTTGAAACTCTATTTTCGAAGAAATTCTTGCTAAATTTTTGTGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTCTTCGAAAGTGTCTTACA</pcr_primer_p1>
		<pcr_primer_p2>TTGGAAATTCGAAAATTCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATGTCTTCGAAAGTGTCTTACATCAAAATTTCTACATATTTTCCTCTTAGATTTTATCTCAAAATTTCCGGAGAATTCGATGTTATCCATGCCAAAATCTATTCCGATTTTTCTTTGGATTTTCTAAAGATTTTCGATTTTTGATTCATTTTCGATCCTGATCTTTTTCTGCAAATTTCCCATATGTTTTCTTGGAATTTTCTTTGTTTTCTGAAAGTTTCAAAAATTTCAGAATTTTCGAATTTCCAA</canonical_amplicon>
		<polymorphic_amplicon>AATGTCTTCGAAAGTGTCTTACATCAAAATTTCTACATATTTTCCTCTTAGATTTTATCTCAAAATTTCCGGAGAATTCGATMTTATCCATGCCAAAATCTATTCCGATTTTTCTTTGGATTTTCTAAAGATTTTCGATTTTTGATTCATTTTCGATCCTGATCTTTTTCTGCAAATTTCCCATATGTTTTCTTGGAATTTTCTTTGTTTTCTGAAAGTTTCAAAAATTTCAGAATTTTCGAATTTCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33362</snp_id>
        <super_contig>c008201393.Contig1</super_contig>
        <contig_pos>5677</contig_pos>
        <strand>-</strand>
        <context>CTGAACTTTA[C/T]AATCTTAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGTTTCAAAAATTTCAGAATTTTCGAATTTCCAAACTTCTGAACTTTA</left_flank>
        <right_flank>AATCTTAGAATTATTGAATTTTCCAACATTTTTTAACTGCCGTAAAACCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTATGCGTACGTGATAATTGATAAGATAAATTGAGAAAAAAAAGTGATCACATTGTCCTTCAGATGACGTCACGTCTTCTGAAGATACACAGCGTGACATTTATCAGATACTTTTTAGTTAAAACATATTTTTCGATTCTTGTCAATTTGAAAGTTAGAAGTTCAGAAATTCCAAACATTCGAACTTGTAATTTTTGAAAATTTGAAAATTTCGGATTTTTAGAATTCAGAAGAATGTCTTCGAAAGTGTCTTACATCAAAATTTCTACATATTTTCCTCTTAGATTTTATCTCAAAATTTCCGGAGAATTCGATGTTATCCATGCCAAAATCTATTCCGATTTTTCTTTGGATTTTCTAAAGATTTTCGATTTTTGATTCATTTTCGATCCTGATCTTTTTCTGCAAATTTCCCATATGTTTTCTTGGAATTTTCTTTGTTTTCTGAAAGTTTCAAAAATTTCAGAATTTTCGAATTTCCAAACTTCTGAACTTTAGAATCTTAGAATTATTGAATTTTCCAACATTTTTTAACTGCCGTAAAACCTGTATTAGAAAGACCCCTTATGGAAGCGTCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGAAAATGGTAGGGCCTCCTGTAATAGAAGGGTCCCCTGTAATAGAAGGGCCCTCTGTGAGAAATGACCCCCCCCCTTCAAAATGTGTTTTGAAATCAGAAAATTTCATTACTTTTTCAGTGGAAAATATTCCGGGAACTCCACTATTTAATAGAAATTTTTTGAAACTCTATTTTCGAAGAAATTCTTGCTAAATTTTTGTGAAATTGGCAGATTTTCATGAGCTTTGAAGGAAATTTCGGAAAAAAAACTGGCTGTAATAATAGAAGGGCCCTTCTGATTGGAGGGCCCCTGTAATAGAAGGGCCCTCCGCAGGTACCTTGGATCAATAGAAGGATCGTACCTTCTAATGCAGGTTTTACGGTATGCATTTTTTCCCGAATTTCAAT</canonical>
            <polymorphic>TTGTATGCGTACGTGATAATTGATAAGATAAATTGAGAAAAAAAAGTGATCACATTGTCCTTCAGATGACGTCACGTCTTCTGAAGATACACAGCGTGACATTTATCAGATACTTTTTAGTTAAAACATATTTTTCGATTCTTGTCAATTTGAAAGTTAGAAGTTCAGAAATTCCAAACATTCGAACTTGTAATTTTTGAAAATTTGAAAATTTCGGATTTTTAGAATTCAGAAGAATGTCTTCGAAAGTGTCTTACATCAAAATTTCTACATATTTTCCTCTTAGATTTTATCTCAAAATTTCCGGAGAATTCGATGTTATCCATGCCAAAATCTATTCCGATTTTTCTTTGGATTTTCTAAAGATTTTCGATTTTTGATTCATTTTCGATCCTGATCTTTTTCTGCAAATTTCCCATATGTTTTCTTGGAATTTTCTTTGTTTTCTGAAAGTTTCAAAAATTTCAGAATTTTCGAATTTCCAAACTTCTGAACTTTAYAATCTTAGAATTATTGAATTTTCCAACATTTTTTAACTGCCGTAAAACCTGTATTAGAAAGACCCCTTATGGAAGCGTCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGAAAATGGTAGGGCCTCCTGTAATAGAAGGGTCCCCTGTAATAGAAGGGCCCTCTGTGAGAAATGACCCCCCCCCTTCAAAATGTGTTTTGAAATCAGAAAATTTCATTACTTTTTCAGTGGAAAATATTCCGGGAACTCCACTATTTAATAGAAATTTTTTGAAACTCTATTTTCGAAGAAATTCTTGCTAAATTTTTGTGAAATTGGCAGATTTTCATGAGCTTTGAAGGAAATTTCGGAAAAAAAACTGGCTGTAATAATAGAAGGGCCCTTCTGATTGGAGGGCCCCTGTAATAGAAGGGCCCTCCGCAGGTACCTTGGATCAATAGAAGGATCGTACCTTCTAATGCAGGTTTTACGGTATGCATTTTTTCCCGAATTTCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>500 242 137 121</canonical_bands>
                <polymorphic_bands>621 242 137</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 242 137 121</canonical_bands>
                <polymorphic_bands>621 242 137</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAATCTATTCCGATTTTTCTT</pcr_primer_p1>
		<pcr_primer_p2>TCCATAAGGGGTCTTTCTAATAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CAAAATCTATTCCGATTTTTCTTTGGATTTTCTAAAGATTTTCGATTTTTGATTCATTTTCGATCCTGATCTTTTTCTGCAAATTTCCCATATGTTTTCTTGGAATTTTCTTTGTTTTCTGAAAGTTTCAAAAATTTCAGAATTTTCGAATTTCCAAACTTCTGAACTTTAGAATCTTAGAATTATTGAATTTTCCAACATTTTTTAACTGCCGTAAAACCTGTATTAGAAAGACCCCTTATGGA</canonical_amplicon>
		<polymorphic_amplicon>CAAAATCTATTCCGATTTTTCTTTGGATTTTCTAAAGATTTTCGATTTTTGATTCATTTTCGATCCTGATCTTTTTCTGCAAATTTCCCATATGTTTTCTTGGAATTTTCTTTGTTTTCTGAAAGTTTCAAAAATTTCAGAATTTTCGAATTTCCAAACTTCTGAACTTTAYAATCTTAGAATTATTGAATTTTCCAACATTTTTTAACTGCCGTAAAACCTGTATTAGAAAGACCCCTTATGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33363</snp_id>
        <super_contig>c008201393.Contig1</super_contig>
        <contig_pos>5824</contig_pos>
        <strand>-</strand>
        <context>AGAAGGGTCC[A/G]CTGTAATAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCCGAGAGGGGCTTGGAAAATGGTAGGGCCTCCTGTAATAGAAGGGTCC</left_flank>
        <right_flank>CTGTAATAGAAGGGCCCTCTGTGAGAAATGACCCCCCCCCTTCAAAATGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTGAAAGTTAGAAGTTCAGAAATTCCAAACATTCGAACTTGTAATTTTTGAAAATTTGAAAATTTCGGATTTTTAGAATTCAGAAGAATGTCTTCGAAAGTGTCTTACATCAAAATTTCTACATATTTTCCTCTTAGATTTTATCTCAAAATTTCCGGAGAATTCGATGTTATCCATGCCAAAATCTATTCCGATTTTTCTTTGGATTTTCTAAAGATTTTCGATTTTTGATTCATTTTCGATCCTGATCTTTTTCTGCAAATTTCCCATATGTTTTCTTGGAATTTTCTTTGTTTTCTGAAAGTTTCAAAAATTTCAGAATTTTCGAATTTCCAAACTTCTGAACTTTAGAATCTTAGAATTATTGAATTTTCCAACATTTTTTAACTGCCGTAAAACCTGTATTAGAAAGACCCCTTATGGAAGCGTCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGAAAATGGTAGGGCCTCCTGTAATAGAAGGGTCCCCTGTAATAGAAGGGCCCTCTGTGAGAAATGACCCCCCCCCTTCAAAATGTGTTTTGAAATCAGAAAATTTCATTACTTTTTCAGTGGAAAATATTCCGGGAACTCCACTATTTAATAGAAATTTTTTGAAACTCTATTTTCGAAGAAATTCTTGCTAAATTTTTGTGAAATTGGCAGATTTTCATGAGCTTTGAAGGAAATTTCGGAAAAAAAACTGGCTGTAATAATAGAAGGGCCCTTCTGATTGGAGGGCCCCTGTAATAGAAGGGCCCTCCGCAGGTACCTTGGATCAATAGAAGGATCGTACCTTCTAATGCAGGTTTTACGGTATGCATTTTTTCCCGAATTTCAATTTTTCTAGATTTTAATAGGATTTGCTAAATTTGTGAATTCTAAATTTCCGAAATTTCAGATCCCCCGAGTACCTTTCAAATTTTCAACTTTTAACACATTGTCCGGTTTTGAAACTTTCTGAAAAACTTTTTTTTCAGATTTTTTTT</canonical>
            <polymorphic>ATTTGAAAGTTAGAAGTTCAGAAATTCCAAACATTCGAACTTGTAATTTTTGAAAATTTGAAAATTTCGGATTTTTAGAATTCAGAAGAATGTCTTCGAAAGTGTCTTACATCAAAATTTCTACATATTTTCCTCTTAGATTTTATCTCAAAATTTCCGGAGAATTCGATGTTATCCATGCCAAAATCTATTCCGATTTTTCTTTGGATTTTCTAAAGATTTTCGATTTTTGATTCATTTTCGATCCTGATCTTTTTCTGCAAATTTCCCATATGTTTTCTTGGAATTTTCTTTGTTTTCTGAAAGTTTCAAAAATTTCAGAATTTTCGAATTTCCAAACTTCTGAACTTTAGAATCTTAGAATTATTGAATTTTCCAACATTTTTTAACTGCCGTAAAACCTGTATTAGAAAGACCCCTTATGGAAGCGTCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGAAAATGGTAGGGCCTCCTGTAATAGAAGGGTCCRCTGTAATAGAAGGGCCCTCTGTGAGAAATGACCCCCCCCCTTCAAAATGTGTTTTGAAATCAGAAAATTTCATTACTTTTTCAGTGGAAAATATTCCGGGAACTCCACTATTTAATAGAAATTTTTTGAAACTCTATTTTCGAAGAAATTCTTGCTAAATTTTTGTGAAATTGGCAGATTTTCATGAGCTTTGAAGGAAATTTCGGAAAAAAAACTGGCTGTAATAATAGAAGGGCCCTTCTGATTGGAGGGCCCCTGTAATAGAAGGGCCCTCCGCAGGTACCTTGGATCAATAGAAGGATCGTACCTTCTAATGCAGGTTTTACGGTATGCATTTTTTCCCGAATTTCAATTTTTCTAGATTTTAATAGGATTTGCTAAATTTGTGAATTCTAAATTTCCGAAATTTCAGATCCCCCGAGTACCTTTCAAATTTTCAACTTTTAACACATTGTCCGGTTTTGAAACTTTCTGAAAAACTTTTTTTTCAGATTTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>445 233 221 31 19 17 17 17</canonical_bands>
                <polymorphic_bands>445 233 221 36 31 17 17</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGGWCCC</site>
                <isoschizomers>
                    <enzyme>SanDI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTGTATTAGAAAGACCCCTTAT</pcr_primer_p1>
		<pcr_primer_p2>CCTTCTATTATTACAGCCAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>334</pcr_amplicon_size>
		<canonical_amplicon>CCTGTATTAGAAAGACCCCTTATGGAAGCGTCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGAAAATGGTAGGGCCTCCTGTAATAGAAGGGTCCCCTGTAATAGAAGGGCCCTCTGTGAGAAATGACCCCCCCCCTTCAAAATGTGTTTTGAAATCAGAAAATTTCATTACTTTTTCAGTGGAAAATATTCCGGGAACTCCACTATTTAATAGAAATTTTTTGAAACTCTATTTTCGAAGAAATTCTTGCTAAATTTTTGTGAAATTGGCAGATTTTCATGAGCTTTGAAGGAAATTTCGGAAAAAAAACTGGCTGTAATAATAGAAGG</canonical_amplicon>
		<polymorphic_amplicon>CCTGTATTAGAAAGACCCCTTATGGAAGCGTCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGAAAATGGTAGGGCCTCCTGTAATAGAAGGGTCCRCTGTAATAGAAGGGCCCTCTGTGAGAAATGACCCCCCCCCTTCAAAATGTGTTTTGAAATCAGAAAATTTCATTACTTTTTCAGTGGAAAATATTCCGGGAACTCCACTATTTAATAGAAATTTTTTGAAACTCTATTTTCGAAGAAATTCTTGCTAAATTTTTGTGAAATTGGCAGATTTTCATGAGCTTTGAAGGAAATTTCGGAAAAAAAACTGGCTGTAATAATAGAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33364</snp_id>
        <super_contig>c008201393.Contig1</super_contig>
        <contig_pos>5850</contig_pos>
        <strand>-</strand>
        <context>CCTCTGTGAG[A/T]AATGACCCCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGGCCTCCTGTAATAGAAGGGTCCCCTGTAATAGAAGGGCCCTCTGTGAG</left_flank>
        <right_flank>AATGACCCCCCCCCTTCAAAATGTGTTTTGAAATCAGAAAATTTCATTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAACATTCGAACTTGTAATTTTTGAAAATTTGAAAATTTCGGATTTTTAGAATTCAGAAGAATGTCTTCGAAAGTGTCTTACATCAAAATTTCTACATATTTTCCTCTTAGATTTTATCTCAAAATTTCCGGAGAATTCGATGTTATCCATGCCAAAATCTATTCCGATTTTTCTTTGGATTTTCTAAAGATTTTCGATTTTTGATTCATTTTCGATCCTGATCTTTTTCTGCAAATTTCCCATATGTTTTCTTGGAATTTTCTTTGTTTTCTGAAAGTTTCAAAAATTTCAGAATTTTCGAATTTCCAAACTTCTGAACTTTAGAATCTTAGAATTATTGAATTTTCCAACATTTTTTAACTGCCGTAAAACCTGTATTAGAAAGACCCCTTATGGAAGCGTCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGAAAATGGTAGGGCCTCCTGTAATAGAAGGGTCCCCTGTAATAGAAGGGCCCTCTGTGAGAAATGACCCCCCCCCTTCAAAATGTGTTTTGAAATCAGAAAATTTCATTACTTTTTCAGTGGAAAATATTCCGGGAACTCCACTATTTAATAGAAATTTTTTGAAACTCTATTTTCGAAGAAATTCTTGCTAAATTTTTGTGAAATTGGCAGATTTTCATGAGCTTTGAAGGAAATTTCGGAAAAAAAACTGGCTGTAATAATAGAAGGGCCCTTCTGATTGGAGGGCCCCTGTAATAGAAGGGCCCTCCGCAGGTACCTTGGATCAATAGAAGGATCGTACCTTCTAATGCAGGTTTTACGGTATGCATTTTTTCCCGAATTTCAATTTTTCTAGATTTTAATAGGATTTGCTAAATTTGTGAATTCTAAATTTCCGAAATTTCAGATCCCCCGAGTACCTTTCAAATTTTCAACTTTTAACACATTGTCCGGTTTTGAAACTTTCTGAAAAACTTTTTTTTCAGATTTTTTTTCGNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>CCAAACATTCGAACTTGTAATTTTTGAAAATTTGAAAATTTCGGATTTTTAGAATTCAGAAGAATGTCTTCGAAAGTGTCTTACATCAAAATTTCTACATATTTTCCTCTTAGATTTTATCTCAAAATTTCCGGAGAATTCGATGTTATCCATGCCAAAATCTATTCCGATTTTTCTTTGGATTTTCTAAAGATTTTCGATTTTTGATTCATTTTCGATCCTGATCTTTTTCTGCAAATTTCCCATATGTTTTCTTGGAATTTTCTTTGTTTTCTGAAAGTTTCAAAAATTTCAGAATTTTCGAATTTCCAAACTTCTGAACTTTAGAATCTTAGAATTATTGAATTTTCCAACATTTTTTAACTGCCGTAAAACCTGTATTAGAAAGACCCCTTATGGAAGCGTCCCTCTAATAGAAGGGCCCTCCGAGAGGGGCTTGGAAAATGGTAGGGCCTCCTGTAATAGAAGGGTCCCCTGTAATAGAAGGGCCCTCTGTGAGWAATGACCCCCCCCCTTCAAAATGTGTTTTGAAATCAGAAAATTTCATTACTTTTTCAGTGGAAAATATTCCGGGAACTCCACTATTTAATAGAAATTTTTTGAAACTCTATTTTCGAAGAAATTCTTGCTAAATTTTTGTGAAATTGGCAGATTTTCATGAGCTTTGAAGGAAATTTCGGAAAAAAAACTGGCTGTAATAATAGAAGGGCCCTTCTGATTGGAGGGCCCCTGTAATAGAAGGGCCCTCCGCAGGTACCTTGGATCAATAGAAGGATCGTACCTTCTAATGCAGGTTTTACGGTATGCATTTTTTCCCGAATTTCAATTTTTCTAGATTTTAATAGGATTTGCTAAATTTGTGAATTCTAAATTTCCGAAATTTCAGATCCCCCGAGTACCTTTCAAATTTTCAACTTTTAACACATTGTCCGGTTTTGAAACTTTCTGAAAAACTTTTTTTTCAGATTTTTTTTCGNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGGGCCTCCTGTAATAGAA</pcr_primer_p1>
		<pcr_primer_p2>CCTTCTATTATTACAGCCAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>GTAGGGCCTCCTGTAATAGAAGGGTCCCCTGTAATAGAAGGGCCCTCTGTGAGAAATGACCCCCCCCCTTCAAAATGTGTTTTGAAATCAGAAAATTTCATTACTTTTTCAGTGGAAAATATTCCGGGAACTCCACTATTTAATAGAAATTTTTTGAAACTCTATTTTCGAAGAAATTCTTGCTAAATTTTTGTGAAATTGGCAGATTTTCATGAGCTTTGAAGGAAATTTCGGAAAAAAAACTGGCTGTAATAATAGAAGG</canonical_amplicon>
		<polymorphic_amplicon>GTAGGGCCTCCTGTAATAGAAGGGTCCCCTGTAATAGAAGGGCCCTCTGTGAGWAATGACCCCCCCCCTTCAAAATGTGTTTTGAAATCAGAAAATTTCATTACTTTTTCAGTGGAAAATATTCCGGGAACTCCACTATTTAATAGAAATTTTTTGAAACTCTATTTTCGAAGAAATTCTTGCTAAATTTTTGTGAAATTGGCAGATTTTCATGAGCTTTGAAGGAAATTTCGGAAAAAAAACTGGCTGTAATAATAGAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33365</snp_id>
        <super_contig>c008201393.Contig1</super_contig>
        <contig_pos>8820</contig_pos>
        <strand></strand>
        <context>ttctgaattt[T/C]tgaatttytG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTT</left_flank>
        <right_flank>TGAATTTTTGAATTTCTGAACTTCTAAGCTCCGCCCCTTTTTTTCAGTGT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGCAAGTACAACTTGATGATTCTCTGCTGGGGTCCTGGTATGGCAAGCAGGTAATTTGAGCTCCGCCCCTTTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAAATTCTGGAATTATGAAATTCTGAATGCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTTTGAATTTCTGAACTTCTAAGCTCCGCCCCTTTTTTTCAGTGTCCACGACCATACCGATGCTCACTGTTTCGTGAAAATTTTGGATGGCGAATTGACGGAAACAAAATATGACTGGCCAAAAAAAAAGCACACCCCACTGGAAACAATTGAAAATAAAACATATGGATTGAATGGGGTGTCTTATATGAATGGTTGGTTAATTAGAGGGTAATTAGGGGTAAAAATGTAAGTTTTCGAAAAAAAAATTCTGGAAATTTCAGACGAGTTGGGTCTTCACCGAATGGAGAATCAAAGTCATTCGAATGGAGCCGTCTCACTTCACTTGTACATTCCACCCTACAGTACCTGCAACGCCTTTGATGAGGTACAGTAATCCAAAAAAAACAATTTTCGAGTTTTCCCAAGTTTTGAATTTCTGAAGTTCTGAATTTCTGAAGTTCTGAAATTCTGAAATTTTGAATTTCTTGAATTCTGAGATTCTGAGATTCTGAG</canonical>
            <polymorphic>ATGGCAAGTACAACTTGATGATTCTCTGCTGGGGTCCTGGTATGGCAAGCAGGTAATTTGAGCTCCGCCCCTTTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAAATTCTGGAATTATGAAATTCTGAATGCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTYTGAATTTTTGAATTTCTGAACTTCTAAGCTCCGCCCCTTTTTTTCAGTGTCCACGACCATACCGATGCTCACTGTTTCGTGAAAATTTTGGATGGCGAATTGACGGAAACAAAATATGACTGGCCAAAAAAAAAGCACACCCCACTGGAAACAATTGAAAATAAAACATATGGATTGAATGGGGTGTCTTATATGAATGGTTGGTTAATTAGAGGGTAATTAGGGGTAAAAATGTAAGTTTTCGAAAAAAAAATTCTGGAAATTTCAGACGAGTTGGGTCTTCACCGAATGGAGAATCAAAGTCATTCGAATGGAGCCGTCTCACTTCACTTGTACATTCCACCCTACAGTACCTGCAACGCCTTTGATGAGGTACAGTAATCCAAAAAAAACAATTTTCGAGTTTTCCCAAGTTTTGAATTTCTGAAGTTCTGAATTTCTGAAGTTCTGAAATTCTGAAATTTTGAATTTCTTGAATTCTGAGATTCTGAGATTCTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATGGCAAGCAGGTAATTT</pcr_primer_p1>
		<pcr_primer_p2>GAAACAGTGAGCATCGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>539</pcr_amplicon_size>
		<canonical_amplicon>GTATGGCAAGCAGGTAATTTGAGCTCCGCCCCTTTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAAATTCTGGAATTATGAAATTCTGAATGCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTTTGAATTTCTGAACTTCTAAGCTCCGCCCCTTTTTTTCAGTGTCCACGACCATACCGATGCTCACTGTTTC</canonical_amplicon>
		<polymorphic_amplicon>GTATGGCAAGCAGGTAATTTGAGCTCCGCCCCTTTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAAATTCTGGAATTATGAAATTCTGAATGCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTYTGAATTTTTGAATTTCTGAACTTCTAAGCTCCGCCCCTTTTTTTCAGTGTCCACGACCATACCGATGCTCACTGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33366</snp_id>
        <super_contig>c008201393.Contig1</super_contig>
        <contig_pos>8828</contig_pos>
        <strand></strand>
        <context>ttytgaattt[T/C]tGAATTTCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTT</left_flank>
        <right_flank>TGAATTTCTGAACTTCTAAGCTCCGCCCCTTTTTTTCAGTGTCCACGACC</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACAACTTGATGATTCTCTGCTGGGGTCCTGGTATGGCAAGCAGGTAATTTGAGCTCCGCCCCTTTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAAATTCTGGAATTATGAAATTCTGAATGCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTTTGAATTTCTGAACTTCTAAGCTCCGCCCCTTTTTTTCAGTGTCCACGACCATACCGATGCTCACTGTTTCGTGAAAATTTTGGATGGCGAATTGACGGAAACAAAATATGACTGGCCAAAAAAAAAGCACACCCCACTGGAAACAATTGAAAATAAAACATATGGATTGAATGGGGTGTCTTATATGAATGGTTGGTTAATTAGAGGGTAATTAGGGGTAAAAATGTAAGTTTTCGAAAAAAAAATTCTGGAAATTTCAGACGAGTTGGGTCTTCACCGAATGGAGAATCAAAGTCATTCGAATGGAGCCGTCTCACTTCACTTGTACATTCCACCCTACAGTACCTGCAACGCCTTTGATGAGGTACAGTAATCCAAAAAAAACAATTTTCGAGTTTTCCCAAGTTTTGAATTTCTGAAGTTCTGAATTTCTGAAGTTCTGAAATTCTGAAATTTTGAATTTCTTGAATTCTGAGATTCTGAGATTCTGAGATTCTGAG</canonical>
            <polymorphic>TACAACTTGATGATTCTCTGCTGGGGTCCTGGTATGGCAAGCAGGTAATTTGAGCTCCGCCCCTTTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAAATTCTGGAATTATGAAATTCTGAATGCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTYTGAATTTCTGAACTTCTAAGCTCCGCCCCTTTTTTTCAGTGTCCACGACCATACCGATGCTCACTGTTTCGTGAAAATTTTGGATGGCGAATTGACGGAAACAAAATATGACTGGCCAAAAAAAAAGCACACCCCACTGGAAACAATTGAAAATAAAACATATGGATTGAATGGGGTGTCTTATATGAATGGTTGGTTAATTAGAGGGTAATTAGGGGTAAAAATGTAAGTTTTCGAAAAAAAAATTCTGGAAATTTCAGACGAGTTGGGTCTTCACCGAATGGAGAATCAAAGTCATTCGAATGGAGCCGTCTCACTTCACTTGTACATTCCACCCTACAGTACCTGCAACGCCTTTGATGAGGTACAGTAATCCAAAAAAAACAATTTTCGAGTTTTCCCAAGTTTTGAATTTCTGAAGTTCTGAATTTCTGAAGTTCTGAAATTCTGAAATTTTGAATTTCTTGAATTCTGAGATTCTGAGATTCTGAGATTCTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATGGCAAGCAGGTAATTT</pcr_primer_p1>
		<pcr_primer_p2>GAAACAGTGAGCATCGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>539</pcr_amplicon_size>
		<canonical_amplicon>GTATGGCAAGCAGGTAATTTGAGCTCCGCCCCTTTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAAATTCTGGAATTATGAAATTCTGAATGCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTTTGAATTTCTGAACTTCTAAGCTCCGCCCCTTTTTTTCAGTGTCCACGACCATACCGATGCTCACTGTTTC</canonical_amplicon>
		<polymorphic_amplicon>GTATGGCAAGCAGGTAATTTGAGCTCCGCCCCTTTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAAATTCTGGAATTATGAAATTCTGAATGCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTYTGAATTTCTGAACTTCTAAGCTCCGCCCCTTTTTTTCAGTGTCCACGACCATACCGATGCTCACTGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33367</snp_id>
        <super_contig>c008201393.Contig1</super_contig>
        <contig_pos>8841</contig_pos>
        <strand>+</strand>
        <context>AATTTCTGAA[C/T]TTYTAAGCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTTTGAATTTCTGAA</left_flank>
        <right_flank>TTCTAAGCTCCGCCCCTTTTTTTCAGTGTCCACGACCATACCGATGCTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTCTGCTGGGGTCCTGGTATGGCAAGCAGGTAATTTGAGCTCCGCCCCTTTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAAATTCTGGAATTATGAAATTCTGAATGCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTTTGAATTTCTGAACTTCTAAGCTCCGCCCCTTTTTTTCAGTGTCCACGACCATACCGATGCTCACTGTTTCGTGAAAATTTTGGATGGCGAATTGACGGAAACAAAATATGACTGGCCAAAAAAAAAGCACACCCCACTGGAAACAATTGAAAATAAAACATATGGATTGAATGGGGTGTCTTATATGAATGGTTGGTTAATTAGAGGGTAATTAGGGGTAAAAATGTAAGTTTTCGAAAAAAAAATTCTGGAAATTTCAGACGAGTTGGGTCTTCACCGAATGGAGAATCAAAGTCATTCGAATGGAGCCGTCTCACTTCACTTGTACATTCCACCCTACAGTACCTGCAACGCCTTTGATGAGGTACAGTAATCCAAAAAAAACAATTTTCGAGTTTTCCCAAGTTTTGAATTTCTGAAGTTCTGAATTTCTGAAGTTCTGAAATTCTGAAATTTTGAATTTCTTGAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCT</canonical>
            <polymorphic>TTCTCTGCTGGGGTCCTGGTATGGCAAGCAGGTAATTTGAGCTCCGCCCCTTTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAAATTCTGGAATTATGAAATTCTGAATGCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTTTGAATTTCTGAAYTTCTAAGCTCCGCCCCTTTTTTTCAGTGTCCACGACCATACCGATGCTCACTGTTTCGTGAAAATTTTGGATGGCGAATTGACGGAAACAAAATATGACTGGCCAAAAAAAAAGCACACCCCACTGGAAACAATTGAAAATAAAACATATGGATTGAATGGGGTGTCTTATATGAATGGTTGGTTAATTAGAGGGTAATTAGGGGTAAAAATGTAAGTTTTCGAAAAAAAAATTCTGGAAATTTCAGACGAGTTGGGTCTTCACCGAATGGAGAATCAAAGTCATTCGAATGGAGCCGTCTCACTTCACTTGTACATTCCACCCTACAGTACCTGCAACGCCTTTGATGAGGTACAGTAATCCAAAAAAAACAATTTTCGAGTTTTCCCAAGTTTTGAATTTCTGAAGTTCTGAATTTCTGAAGTTCTGAAATTCTGAAATTTTGAATTTCTTGAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATGGCAAGCAGGTAATTT</pcr_primer_p1>
		<pcr_primer_p2>GAAACAGTGAGCATCGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>539</pcr_amplicon_size>
		<canonical_amplicon>GTATGGCAAGCAGGTAATTTGAGCTCCGCCCCTTTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAAATTCTGGAATTATGAAATTCTGAATGCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTTTGAATTTCTGAACTTCTAAGCTCCGCCCCTTTTTTTCAGTGTCCACGACCATACCGATGCTCACTGTTTC</canonical_amplicon>
		<polymorphic_amplicon>GTATGGCAAGCAGGTAATTTGAGCTCCGCCCCTTTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAAATTCTGGAATTATGAAATTCTGAATGCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTTTGAATTTCTGAAYTTCTAAGCTCCGCCCCTTTTTTTCAGTGTCCACGACCATACCGATGCTCACTGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33368</snp_id>
        <super_contig>c008201393.Contig1</super_contig>
        <contig_pos>8844</contig_pos>
        <strand></strand>
        <context>TTCTGAAYTT[C/T]TAAGCTCCGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTGAATTTCTGAATTTCTGAATTTTTGAATTTTTGAATTTCTGAACTT</left_flank>
        <right_flank>TAAGCTCCGCCCCTTTTTTTCAGTGTCCACGACCATACCGATGCTCACTG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGCTGGGGTCCTGGTATGGCAAGCAGGTAATTTGAGCTCCGCCCCTTTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAAATTCTGGAATTATGAAATTCTGAATGCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTTTGAATTTCTGAACTTCTAAGCTCCGCCCCTTTTTTTCAGTGTCCACGACCATACCGATGCTCACTGTTTCGTGAAAATTTTGGATGGCGAATTGACGGAAACAAAATATGACTGGCCAAAAAAAAAGCACACCCCACTGGAAACAATTGAAAATAAAACATATGGATTGAATGGGGTGTCTTATATGAATGGTTGGTTAATTAGAGGGTAATTAGGGGTAAAAATGTAAGTTTTCGAAAAAAAAATTCTGGAAATTTCAGACGAGTTGGGTCTTCACCGAATGGAGAATCAAAGTCATTCGAATGGAGCCGTCTCACTTCACTTGTACATTCCACCCTACAGTACCTGCAACGCCTTTGATGAGGTACAGTAATCCAAAAAAAACAATTTTCGAGTTTTCCCAAGTTTTGAATTTCTGAAGTTCTGAATTTCTGAAGTTCTGAAATTCTGAAATTTTGAATTTCTTGAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAG</canonical>
            <polymorphic>TCTGCTGGGGTCCTGGTATGGCAAGCAGGTAATTTGAGCTCCGCCCCTTTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAAATTCTGGAATTATGAAATTCTGAATGCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTTTGAATTTCTGAACTTYTAAGCTCCGCCCCTTTTTTTCAGTGTCCACGACCATACCGATGCTCACTGTTTCGTGAAAATTTTGGATGGCGAATTGACGGAAACAAAATATGACTGGCCAAAAAAAAAGCACACCCCACTGGAAACAATTGAAAATAAAACATATGGATTGAATGGGGTGTCTTATATGAATGGTTGGTTAATTAGAGGGTAATTAGGGGTAAAAATGTAAGTTTTCGAAAAAAAAATTCTGGAAATTTCAGACGAGTTGGGTCTTCACCGAATGGAGAATCAAAGTCATTCGAATGGAGCCGTCTCACTTCACTTGTACATTCCACCCTACAGTACCTGCAACGCCTTTGATGAGGTACAGTAATCCAAAAAAAACAATTTTCGAGTTTTCCCAAGTTTTGAATTTCTGAAGTTCTGAATTTCTGAAGTTCTGAAATTCTGAAATTTTGAATTTCTTGAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 456 8 8 8 8 8 4</canonical_bands>
                <polymorphic_bands>956 8 8 8 8 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATGGCAAGCAGGTAATTT</pcr_primer_p1>
		<pcr_primer_p2>GAAACAGTGAGCATCGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>539</pcr_amplicon_size>
		<canonical_amplicon>GTATGGCAAGCAGGTAATTTGAGCTCCGCCCCTTTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAAATTCTGGAATTATGAAATTCTGAATGCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTTTGAATTTCTGAACTTCTAAGCTCCGCCCCTTTTTTTCAGTGTCCACGACCATACCGATGCTCACTGTTTC</canonical_amplicon>
		<polymorphic_amplicon>GTATGGCAAGCAGGTAATTTGAGCTCCGCCCCTTTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAAATTCTGGAATTATGAAATTCTGAATGCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTTTGAATTTCTGAACTTYTAAGCTCCGCCCCTTTTTTTCAGTGTCCACGACCATACCGATGCTCACTGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33369</snp_id>
        <super_contig>c008201393.Contig1</super_contig>
        <contig_pos>8931</contig_pos>
        <strand>+</strand>
        <context>TGACGGAAAC[A/C]AAATATGACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACCGATGCTCACTGTTTCGTGAAAATTTTGGATGGCGAATTGACGGAAAC</left_flank>
        <right_flank>AAATATGACTGGCCAAAAAAAAAGCACACCCCACTGGAAACAATTGAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAAATTCTGGAATTATGAAATTCTGAATGCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTTTGAATTTCTGAACTTCTAAGCTCCGCCCCTTTTTTTCAGTGTCCACGACCATACCGATGCTCACTGTTTCGTGAAAATTTTGGATGGCGAATTGACGGAAACAAAATATGACTGGCCAAAAAAAAAGCACACCCCACTGGAAACAATTGAAAATAAAACATATGGATTGAATGGGGTGTCTTATATGAATGGTTGGTTAATTAGAGGGTAATTAGGGGTAAAAATGTAAGTTTTCGAAAAAAAAATTCTGGAAATTTCAGACGAGTTGGGTCTTCACCGAATGGAGAATCAAAGTCATTCGAATGGAGCCGTCTCACTTCACTTGTACATTCCACCCTACAGTACCTGCAACGCCTTTGATGAGGTACAGTAATCCAAAAAAAACAATTTTCGAGTTTTCCCAAGTTTTGAATTTCTGAAGTTCTGAATTTCTGAAGTTCTGAAATTCTGAAATTTTGAATTTCTTGAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGA</canonical>
            <polymorphic>ATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTAAATTTCTGAAATTCTGGAATTATGAAATTCTGAATGCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTTTGAATTTCTGAACTTCTAAGCTCCGCCCCTTTTTTTCAGTGTCCACGACCATACCGATGCTCACTGTTTCGTGAAAATTTTGGATGGCGAATTGACGGAAACMAAATATGACTGGCCAAAAAAAAAGCACACCCCACTGGAAACAATTGAAAATAAAACATATGGATTGAATGGGGTGTCTTATATGAATGGTTGGTTAATTAGAGGGTAATTAGGGGTAAAAATGTAAGTTTTCGAAAAAAAAATTCTGGAAATTTCAGACGAGTTGGGTCTTCACCGAATGGAGAATCAAAGTCATTCGAATGGAGCCGTCTCACTTCACTTGTACATTCCACCCTACAGTACCTGCAACGCCTTTGATGAGGTACAGTAATCCAAAAAAAACAATTTTCGAGTTTTCCCAAGTTTTGAATTTCTGAAGTTCTGAATTTCTGAAGTTCTGAAATTCTGAAATTTTGAATTTCTTGAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACCGATGCTCACTGTTTC</pcr_primer_p1>
		<pcr_primer_p2>GAATGACTTTGATTCTCCATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATACCGATGCTCACTGTTTCGTGAAAATTTTGGATGGCGAATTGACGGAAACAAAATATGACTGGCCAAAAAAAAAGCACACCCCACTGGAAACAATTGAAAATAAAACATATGGATTGAATGGGGTGTCTTATATGAATGGTTGGTTAATTAGAGGGTAATTAGGGGTAAAAATGTAAGTTTTCGAAAAAAAAATTCTGGAAATTTCAGACGAGTTGGGTCTTCACCGAATGGAGAATCAAAGTCATTC</canonical_amplicon>
		<polymorphic_amplicon>ATACCGATGCTCACTGTTTCGTGAAAATTTTGGATGGCGAATTGACGGAAACMAAATATGACTGGCCAAAAAAAAAGCACACCCCACTGGAAACAATTGAAAATAAAACATATGGATTGAATGGGGTGTCTTATATGAATGGTTGGTTAATTAGAGGGTAATTAGGGGTAAAAATGTAAGTTTTCGAAAAAAAAATTCTGGAAATTTCAGACGAGTTGGGTCTTCACCGAATGGAGAATCAAAGTCATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33370</snp_id>
        <super_contig>c008201393.Contig1</super_contig>
        <contig_pos>9180</contig_pos>
        <strand>+</strand>
        <context>GTACCTGCAA[C/T]GCCTTTGATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGGAGCCGTCTCACTTCACTTGTACATTCCACCCTACAGTACCTGCAA</left_flank>
        <right_flank>GCCTTTGATGAGGTACAGTAATCCAAAAAAAACAATTTTCGAGTTTTCCC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTTTGAATTTCTGAACTTCTAAGCTCCGCCCCTTTTTTTCAGTGTCCACGACCATACCGATGCTCACTGTTTCGTGAAAATTTTGGATGGCGAATTGACGGAAACAAAATATGACTGGCCAAAAAAAAAGCACACCCCACTGGAAACAATTGAAAATAAAACATATGGATTGAATGGGGTGTCTTATATGAATGGTTGGTTAATTAGAGGGTAATTAGGGGTAAAAATGTAAGTTTTCGAAAAAAAAATTCTGGAAATTTCAGACGAGTTGGGTCTTCACCGAATGGAGAATCAAAGTCATTCGAATGGAGCCGTCTCACTTCACTTGTACATTCCACCCTACAGTACCTGCAACGCCTTTGATGAGGTACAGTAATCCAAAAAAAACAATTTTCGAGTTTTCCCAAGTTTTGAATTTCTGAAGTTCTGAATTTCTGAAGTTCTGAAATTCTGAAATTTTGAATTTCTTGAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGATATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCTGAGATTCGAGATTCTGGAATCATGATATTCTGAGATTCTGAAATTCTGATATTTAGAAAATCGGCAATTCATAAACTCTGAAGCTCTAAACTCTGAAGTTCTGAATTTTTGAAAT</canonical>
            <polymorphic>TGCCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTTTGAATTTCTGAACTTCTAAGCTCCGCCCCTTTTTTTCAGTGTCCACGACCATACCGATGCTCACTGTTTCGTGAAAATTTTGGATGGCGAATTGACGGAAACAAAATATGACTGGCCAAAAAAAAAGCACACCCCACTGGAAACAATTGAAAATAAAACATATGGATTGAATGGGGTGTCTTATATGAATGGTTGGTTAATTAGAGGGTAATTAGGGGTAAAAATGTAAGTTTTCGAAAAAAAAATTCTGGAAATTTCAGACGAGTTGGGTCTTCACCGAATGGAGAATCAAAGTCATTCGAATGGAGCCGTCTCACTTCACTTGTACATTCCACCCTACAGTACCTGCAAYGCCTTTGATGAGGTACAGTAATCCAAAAAAAACAATTTTCGAGTTTTCCCAAGTTTTGAATTTCTGAAGTTCTGAATTTCTGAAGTTCTGAAATTCTGAAATTTTGAATTTCTTGAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGATATTCTGAGATTCTGAGATTCTGAAATTCTGAGATTCTGAGATTCGAGATTCTGGAATCATGATATTCTGAGATTCTGAAATTCTGATATTTAGAAAATCGGCAATTCATAAACTCTGAAGCTCTAAACTCTGAAGTTCTGAATTTTTGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATGGAGAATCAAAGTCA</pcr_primer_p1>
		<pcr_primer_p2>GTTCTCTGGAAAAGGGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>635</pcr_amplicon_size>
		<canonical_amplicon>CGAATGGAGAATCAAAGTCATTCGAATGGAGCCGTCTCACTTCACTTGTACATTCCACCCTACAGTACCTGCAACGCCTTTGATGAGGTACAGT</canonical_amplicon>
		<polymorphic_amplicon>CGAATGGAGAATCAAAGTCATTCGAATGGAGCCGTCTCACTTCACTTGTACATTCCACCCTACAGTACCTGCAAYGCCTTTGATGAGGTACAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33371</snp_id>
        <super_contig>c008201393.Contig1</super_contig>
        <contig_pos>10362</contig_pos>
        <strand>+</strand>
        <context>AGAGGACCCT[C/T]CTATTACAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGGGGGGGGGTCATTTCTCACAGAGGGCCCTTCTATTACAGAGGACCCT</left_flank>
        <right_flank>CTATTACAGGAGGCCCTACTATTTTCTAAGCCCCTCTCGGAGGGCCCTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTGTAAGATTTTTAAATTTTTCCTTGTAATTTGGATTTTTGCGAATTTTTGAAAATAAAGTTTCTTGAGCACGATTTTCTATTTTTGAGAAATTCAGAAATTTCGAAATTGCCGCGAATTTCCAAAATTTGCGAAATTCAGAAATTAAATTCTAAAATTCAAATTTTCAAAGAATTTAGAAGAAGCTAGAAGTTTCCAACTTACCGTAAAACCTGTATTAGAAGCCCTTATATTTTTCCAAGGTACCTCCGGAGGTCCCTTCTATTTTTACAGCCAGTTTTTTCCGAAATTTCCTCAAAGTTCATGAAAATCTGCCAATTTTACAAAAATTTAGCAAGAATTTCTTCGAAAATAGAGTTTCAACAAATTTCTATTAAATAGTGGAGTTCCCGGAATATTTTCCACTGAAAAAGTAATGAAATTTTCTGATTTCAAAACACATTTTGAAGGGGGGGGGGGTCATTTCTCACAGAGGGCCCTTCTATTACAGAGGACCCTCCTATTACAGGAGGCCCTACTATTTTCTAAGCCCCTCTCGGAGGGCCCTTCTATTAGAGGGACGCTTCCATAAGGGGTCCTTCTAATACAGGTTTTACGGCAGTTAAAAAATGTTGGAAAATTCAATAATTCTAAGATTCTAAAGTTCAGAAGTTTGGAAATTCGAAAATTCTGAAATTTTTGAAACTTTCAGAAAACAAAGAAAATTCCAAGAAAACATATGGGAAATTTGCAGAAAAAGATCAGGATCGAAAATGAATCAAAATCGAAAATCTTTAGAAAATCCAAAGAAAAATCGGAATAGATTTTGGCATGGATAACATCGAATTCTCCGGAAATTTTGAGATAAAATCTAAGAGGAAAATATGTAGAAATTTTGATGTAAGACACTTTCGAAGGCATTCTTCTGAATTAGTCAGAAGGGGTTATTTTTCACAGAGGGCTCTCCTATTAGAAGGGCCCTTCTATCACAGCGGGACCTTCTGATGGAGTTTTATCAAT</canonical>
            <polymorphic>GTTGTAAGATTTTTAAATTTTTCCTTGTAATTTGGATTTTTGCGAATTTTTGAAAATAAAGTTTCTTGAGCACGATTTTCTATTTTTGAGAAATTCAGAAATTTCGAAATTGCCGCGAATTTCCAAAATTTGCGAAATTCAGAAATTAAATTCTAAAATTCAAATTTTCAAAGAATTTAGAAGAAGCTAGAAGTTTCCAACTTACCGTAAAACCTGTATTAGAAGCCCTTATATTTTTCCAAGGTACCTCCGGAGGTCCCTTCTATTTTTACAGCCAGTTTTTTCCGAAATTTCCTCAAAGTTCATGAAAATCTGCCAATTTTACAAAAATTTAGCAAGAATTTCTTCGAAAATAGAGTTTCAACAAATTTCTATTAAATAGTGGAGTTCCCGGAATATTTTCCACTGAAAAAGTAATGAAATTTTCTGATTTCAAAACACATTTTGAAGGGGGGGGGGGTCATTTCTCACAGAGGGCCCTTCTATTACAGAGGACCCTYCTATTACAGGAGGCCCTACTATTTTCTAAGCCCCTCTCGGAGGGCCCTTCTATTAGAGGGACGCTTCCATAAGGGGTCCTTCTAATACAGGTTTTACGGCAGTTAAAAAATGTTGGAAAATTCAATAATTCTAAGATTCTAAAGTTCAGAAGTTTGGAAATTCGAAAATTCTGAAATTTTTGAAACTTTCAGAAAACAAAGAAAATTCCAAGAAAACATATGGGAAATTTGCAGAAAAAGATCAGGATCGAAAATGAATCAAAATCGAAAATCTTTAGAAAATCCAAAGAAAAATCGGAATAGATTTTGGCATGGATAACATCGAATTCTCCGGAAATTTTGAGATAAAATCTAAGAGGAAAATATGTAGAAATTTTGATGTAAGACACTTTCGAAGGCATTCTTCTGAATTAGTCAGAAGGGGTTATTTTTCACAGAGGGCTCTCCTATTAGAAGGGCCCTTCTATCACAGCGGGACCTTCTGATGGAGTTTTATCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>506 445 33 16</canonical_bands>
                <polymorphic_bands>539 445 16</polymorphic_bands>
            </assay>
            <assay>
                <site>CCTNNNNNAGG</site>
                <isoschizomers>
                    <enzyme>BstENI</enzyme>
                    <enzyme>EcoNI</enzyme>
                    <enzyme>XagI</enzyme>
                </isoschizomers>
                <canonical_bands>504 463 33</canonical_bands>
                <polymorphic_bands>537 463</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCACGATTTTCTATTTTTGAG</pcr_primer_p1>
		<pcr_primer_p2>AATTTTCTTTGTTTTCTGAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>639</pcr_amplicon_size>
		<canonical_amplicon>AGCACGATTTTCTATTTTTGAGAAATTCAGAAATTTCGAAATTGCCGCGAATTTCCAAAATTTGCGAAATTCAGAAATTAAATTCTAAAATTCAAATTTTCAAAGAATTTAGAAGAAGCTAGAAGTTTCCAACTTACCGTAAAACCTGTATTAGAAGCCCTTATATTTTTCCAAGGTACCTCCGGAGGTCCCTTCTATTTTTACAGCCAGTTTTTTCCGAAATTTCCTCAAAGTTCATGAAAATCTGCCAATTTTACAAAAATTTAGCAAGAATTTCTTCGAAAATAGAGTTTCAACAAATTTCTATTAAATAGTGGAGTTCCCGGAATATTTTCCACTGAAAAAGTAATGAAATTTTCTGATTTCAAAACACATTTTGAAGGGGGGGGGGGTCATTTCTCACAGAGGGCCCTTCTATTACAGAGGACCCTCCTATTACAGGAGGCCCTACTATTTTCTAAGCCCCTCTCGGAGGGCCCTTCTATTAGAGGGACGCTTCCATAAGGGGTCCTTCTAATACAGGTTTTACGGCAGTTAAAAAATGTTGGAAAATTCAATAATTCTAAGATTCTAAAGTTCAGAAGTTTGGAAATTCGAAAATTCTGAAATTTTTGAAACTTTCAGAAAACAAAGAAAATT</canonical_amplicon>
		<polymorphic_amplicon>AGCACGATTTTCTATTTTTGAGAAATTCAGAAATTTCGAAATTGCCGCGAATTTCCAAAATTTGCGAAATTCAGAAATTAAATTCTAAAATTCAAATTTTCAAAGAATTTAGAAGAAGCTAGAAGTTTCCAACTTACCGTAAAACCTGTATTAGAAGCCCTTATATTTTTCCAAGGTACCTCCGGAGGTCCCTTCTATTTTTACAGCCAGTTTTTTCCGAAATTTCCTCAAAGTTCATGAAAATCTGCCAATTTTACAAAAATTTAGCAAGAATTTCTTCGAAAATAGAGTTTCAACAAATTTCTATTAAATAGTGGAGTTCCCGGAATATTTTCCACTGAAAAAGTAATGAAATTTTCTGATTTCAAAACACATTTTGAAGGGGGGGGGGGTCATTTCTCACAGAGGGCCCTTCTATTACAGAGGACCCTYCTATTACAGGAGGCCCTACTATTTTCTAAGCCCCTCTCGGAGGGCCCTTCTATTAGAGGGACGCTTCCATAAGGGGTCCTTCTAATACAGGTTTTACGGCAGTTAAAAAATGTTGGAAAATTCAATAATTCTAAGATTCTAAAGTTCAGAAGTTTGGAAATTCGAAAATTCTGAAATTTTTGAAACTTTCAGAAAACAAAGAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33372</snp_id>
        <super_contig>c008201393.Contig1</super_contig>
        <contig_pos>10389</contig_pos>
        <strand>+</strand>
        <context>TACTATTTTC[C/T]AAGCCCCTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCCTTCTATTACAGAGGACCCTCCTATTACAGGAGGCCCTACTATTTTC</left_flank>
        <right_flank>AAGCCCCTCTCGGAGGGCCCTTCTATTAGAGGGACGCTTCCATAAGGGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATTTGGATTTTTGCGAATTTTTGAAAATAAAGTTTCTTGAGCACGATTTTCTATTTTTGAGAAATTCAGAAATTTCGAAATTGCCGCGAATTTCCAAAATTTGCGAAATTCAGAAATTAAATTCTAAAATTCAAATTTTCAAAGAATTTAGAAGAAGCTAGAAGTTTCCAACTTACCGTAAAACCTGTATTAGAAGCCCTTATATTTTTCCAAGGTACCTCCGGAGGTCCCTTCTATTTTTACAGCCAGTTTTTTCCGAAATTTCCTCAAAGTTCATGAAAATCTGCCAATTTTACAAAAATTTAGCAAGAATTTCTTCGAAAATAGAGTTTCAACAAATTTCTATTAAATAGTGGAGTTCCCGGAATATTTTCCACTGAAAAAGTAATGAAATTTTCTGATTTCAAAACACATTTTGAAGGGGGGGGGGGTCATTTCTCACAGAGGGCCCTTCTATTACAGAGGACCCTCCTATTACAGGAGGCCCTACTATTTTCTAAGCCCCTCTCGGAGGGCCCTTCTATTAGAGGGACGCTTCCATAAGGGGTCCTTCTAATACAGGTTTTACGGCAGTTAAAAAATGTTGGAAAATTCAATAATTCTAAGATTCTAAAGTTCAGAAGTTTGGAAATTCGAAAATTCTGAAATTTTTGAAACTTTCAGAAAACAAAGAAAATTCCAAGAAAACATATGGGAAATTTGCAGAAAAAGATCAGGATCGAAAATGAATCAAAATCGAAAATCTTTAGAAAATCCAAAGAAAAATCGGAATAGATTTTGGCATGGATAACATCGAATTCTCCGGAAATTTTGAGATAAAATCTAAGAGGAAAATATGTAGAAATTTTGATGTAAGACACTTTCGAAGGCATTCTTCTGAATTAGTCAGAAGGGGTTATTTTTCACAGAGGGCTCTCCTATTAGAAGGGCCCTTCTATCACAGCGGGACCTTCTGATGGAGTTTTATCAATTTCAGAATTTAATGACTTTCAGGAATC</canonical>
            <polymorphic>TAATTTGGATTTTTGCGAATTTTTGAAAATAAAGTTTCTTGAGCACGATTTTCTATTTTTGAGAAATTCAGAAATTTCGAAATTGCCGCGAATTTCCAAAATTTGCGAAATTCAGAAATTAAATTCTAAAATTCAAATTTTCAAAGAATTTAGAAGAAGCTAGAAGTTTCCAACTTACCGTAAAACCTGTATTAGAAGCCCTTATATTTTTCCAAGGTACCTCCGGAGGTCCCTTCTATTTTTACAGCCAGTTTTTTCCGAAATTTCCTCAAAGTTCATGAAAATCTGCCAATTTTACAAAAATTTAGCAAGAATTTCTTCGAAAATAGAGTTTCAACAAATTTCTATTAAATAGTGGAGTTCCCGGAATATTTTCCACTGAAAAAGTAATGAAATTTTCTGATTTCAAAACACATTTTGAAGGGGGGGGGGGTCATTTCTCACAGAGGGCCCTTCTATTACAGAGGACCCTCCTATTACAGGAGGCCCTACTATTTTCYAAGCCCCTCTCGGAGGGCCCTTCTATTAGAGGGACGCTTCCATAAGGGGTCCTTCTAATACAGGTTTTACGGCAGTTAAAAAATGTTGGAAAATTCAATAATTCTAAGATTCTAAAGTTCAGAAGTTTGGAAATTCGAAAATTCTGAAATTTTTGAAACTTTCAGAAAACAAAGAAAATTCCAAGAAAACATATGGGAAATTTGCAGAAAAAGATCAGGATCGAAAATGAATCAAAATCGAAAATCTTTAGAAAATCCAAAGAAAAATCGGAATAGATTTTGGCATGGATAACATCGAATTCTCCGGAAATTTTGAGATAAAATCTAAGAGGAAAATATGTAGAAATTTTGATGTAAGACACTTTCGAAGGCATTCTTCTGAATTAGTCAGAAGGGGTTATTTTTCACAGAGGGCTCTCCTATTAGAAGGGCCCTTCTATCACAGCGGGACCTTCTGATGGAGTTTTATCAATTTCAGAATTTAATGACTTTCAGGAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>499 221 175 105</canonical_bands>
                <polymorphic_bands>604 221 175</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGGCCCTTCTATTACAGAG</pcr_primer_p1>
		<pcr_primer_p2>CATATGTTTTCTTGGAATTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGGGCCCTTCTATTACAGAGGACCCTCCTATTACAGGAGGCCCTACTATTTTCTAAGCCCCTCTCGGAGGGCCCTTCTATTAGAGGGACGCTTCCATAAGGGGTCCTTCTAATACAGGTTTTACGGCAGTTAAAAAATGTTGGAAAATTCAATAATTCTAAGATTCTAAAGTTCAGAAGTTTGGAAATTCGAAAATTCTGAAATTTTTGAAACTTTCAGAAAACAAAGAAAATTCCAAGAAAACATATG</canonical_amplicon>
		<polymorphic_amplicon>AGGGCCCTTCTATTACAGAGGACCCTCCTATTACAGGAGGCCCTACTATTTTCYAAGCCCCTCTCGGAGGGCCCTTCTATTAGAGGGACGCTTCCATAAGGGGTCCTTCTAATACAGGTTTTACGGCAGTTAAAAAATGTTGGAAAATTCAATAATTCTAAGATTCTAAAGTTCAGAAGTTTGGAAATTCGAAAATTCTGAAATTTTTGAAACTTTCAGAAAACAAAGAAAATTCCAAGAAAACATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33373</snp_id>
        <super_contig>c008201393.Contig1</super_contig>
        <contig_pos>10444</contig_pos>
        <strand>+</strand>
        <context>AGGGGTCCTT[C/T]TAATACAGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCTCTCGGAGGGCCCTTCTATTAGAGGGACGCTTCCATAAGGGGTCCTT</left_flank>
        <right_flank>TAATACAGGTTTTACGGCAGTTAAAAAATGTTGGAAAATTCAATAATTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGAGAAATTCAGAAATTTCGAAATTGCCGCGAATTTCCAAAATTTGCGAAATTCAGAAATTAAATTCTAAAATTCAAATTTTCAAAGAATTTAGAAGAAGCTAGAAGTTTCCAACTTACCGTAAAACCTGTATTAGAAGCCCTTATATTTTTCCAAGGTACCTCCGGAGGTCCCTTCTATTTTTACAGCCAGTTTTTTCCGAAATTTCCTCAAAGTTCATGAAAATCTGCCAATTTTACAAAAATTTAGCAAGAATTTCTTCGAAAATAGAGTTTCAACAAATTTCTATTAAATAGTGGAGTTCCCGGAATATTTTCCACTGAAAAAGTAATGAAATTTTCTGATTTCAAAACACATTTTGAAGGGGGGGGGGGTCATTTCTCACAGAGGGCCCTTCTATTACAGAGGACCCTCCTATTACAGGAGGCCCTACTATTTTCTAAGCCCCTCTCGGAGGGCCCTTCTATTAGAGGGACGCTTCCATAAGGGGTCCTTCTAATACAGGTTTTACGGCAGTTAAAAAATGTTGGAAAATTCAATAATTCTAAGATTCTAAAGTTCAGAAGTTTGGAAATTCGAAAATTCTGAAATTTTTGAAACTTTCAGAAAACAAAGAAAATTCCAAGAAAACATATGGGAAATTTGCAGAAAAAGATCAGGATCGAAAATGAATCAAAATCGAAAATCTTTAGAAAATCCAAAGAAAAATCGGAATAGATTTTGGCATGGATAACATCGAATTCTCCGGAAATTTTGAGATAAAATCTAAGAGGAAAATATGTAGAAATTTTGATGTAAGACACTTTCGAAGGCATTCTTCTGAATTAGTCAGAAGGGGTTATTTTTCACAGAGGGCTCTCCTATTAGAAGGGCCCTTCTATCACAGCGGGACCTTCTGATGGAGTTTTATCAATTTCAGAATTTAATGACTTTCAGGAATCTTACAATCAGTTTTTTTTTCAAATTTCAGATATCTGGAATTCTTTCTTCAAATCT</canonical>
            <polymorphic>TTTTTGAGAAATTCAGAAATTTCGAAATTGCCGCGAATTTCCAAAATTTGCGAAATTCAGAAATTAAATTCTAAAATTCAAATTTTCAAAGAATTTAGAAGAAGCTAGAAGTTTCCAACTTACCGTAAAACCTGTATTAGAAGCCCTTATATTTTTCCAAGGTACCTCCGGAGGTCCCTTCTATTTTTACAGCCAGTTTTTTCCGAAATTTCCTCAAAGTTCATGAAAATCTGCCAATTTTACAAAAATTTAGCAAGAATTTCTTCGAAAATAGAGTTTCAACAAATTTCTATTAAATAGTGGAGTTCCCGGAATATTTTCCACTGAAAAAGTAATGAAATTTTCTGATTTCAAAACACATTTTGAAGGGGGGGGGGGTCATTTCTCACAGAGGGCCCTTCTATTACAGAGGACCCTCCTATTACAGGAGGCCCTACTATTTTCTAAGCCCCTCTCGGAGGGCCCTTCTATTAGAGGGACGCTTCCATAAGGGGTCCTTYTAATACAGGTTTTACGGCAGTTAAAAAATGTTGGAAAATTCAATAATTCTAAGATTCTAAAGTTCAGAAGTTTGGAAATTCGAAAATTCTGAAATTTTTGAAACTTTCAGAAAACAAAGAAAATTCCAAGAAAACATATGGGAAATTTGCAGAAAAAGATCAGGATCGAAAATGAATCAAAATCGAAAATCTTTAGAAAATCCAAAGAAAAATCGGAATAGATTTTGGCATGGATAACATCGAATTCTCCGGAAATTTTGAGATAAAATCTAAGAGGAAAATATGTAGAAATTTTGATGTAAGACACTTTCGAAGGCATTCTTCTGAATTAGTCAGAAGGGGTTATTTTTCACAGAGGGCTCTCCTATTAGAAGGGCCCTTCTATCACAGCGGGACCTTCTGATGGAGTTTTATCAATTTCAGAATTTAATGACTTTCAGGAATCTTACAATCAGTTTTTTTTTCAAATTTCAGATATCTGGAATTCTTTCTTCAAATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTACAGGAGGCCCTACTATTT</pcr_primer_p1>
		<pcr_primer_p2>TCGATCCTGATCTTTTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATTACAGGAGGCCCTACTATTTTCTAAGCCCCTCTCGGAGGGCCCTTCTATTAGAGGGACGCTTCCATAAGGGGTCCTTCTAATACAGGTTTTACGGCAGTTAAAAAATGTTGGAAAATTCAATAATTCTAAGATTCTAAAGTTCAGAAGTTTGGAAATTCGAAAATTCTGAAATTTTTGAAACTTTCAGAAAACAAAGAAAATTCCAAGAAAACATATGGGAAATTTGCAGAAAAAGATCAGGATCGA</canonical_amplicon>
		<polymorphic_amplicon>TATTACAGGAGGCCCTACTATTTTCTAAGCCCCTCTCGGAGGGCCCTTCTATTAGAGGGACGCTTCCATAAGGGGTCCTTYTAATACAGGTTTTACGGCAGTTAAAAAATGTTGGAAAATTCAATAATTCTAAGATTCTAAAGTTCAGAAGTTTGGAAATTCGAAAATTCTGAAATTTTTGAAACTTTCAGAAAACAAAGAAAATTCCAAGAAAACATATGGGAAATTTGCAGAAAAAGATCAGGATCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33374</snp_id>
        <super_contig>c008201393.Contig1</super_contig>
        <contig_pos>10462</contig_pos>
        <strand>+</strand>
        <context>GGTTTTACGG[C/T]AGTTAAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTATTAGAGGGACGCTTCCATAAGGGGTCCTTCTAATACAGGTTTTACGG</left_flank>
        <right_flank>AGTTAAAAAATGTTGGAAAATTCAATAATTCTAAGATTCTAAAGTTCAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCGAAATTGCCGCGAATTTCCAAAATTTGCGAAATTCAGAAATTAAATTCTAAAATTCAAATTTTCAAAGAATTTAGAAGAAGCTAGAAGTTTCCAACTTACCGTAAAACCTGTATTAGAAGCCCTTATATTTTTCCAAGGTACCTCCGGAGGTCCCTTCTATTTTTACAGCCAGTTTTTTCCGAAATTTCCTCAAAGTTCATGAAAATCTGCCAATTTTACAAAAATTTAGCAAGAATTTCTTCGAAAATAGAGTTTCAACAAATTTCTATTAAATAGTGGAGTTCCCGGAATATTTTCCACTGAAAAAGTAATGAAATTTTCTGATTTCAAAACACATTTTGAAGGGGGGGGGGGTCATTTCTCACAGAGGGCCCTTCTATTACAGAGGACCCTCCTATTACAGGAGGCCCTACTATTTTCTAAGCCCCTCTCGGAGGGCCCTTCTATTAGAGGGACGCTTCCATAAGGGGTCCTTCTAATACAGGTTTTACGGCAGTTAAAAAATGTTGGAAAATTCAATAATTCTAAGATTCTAAAGTTCAGAAGTTTGGAAATTCGAAAATTCTGAAATTTTTGAAACTTTCAGAAAACAAAGAAAATTCCAAGAAAACATATGGGAAATTTGCAGAAAAAGATCAGGATCGAAAATGAATCAAAATCGAAAATCTTTAGAAAATCCAAAGAAAAATCGGAATAGATTTTGGCATGGATAACATCGAATTCTCCGGAAATTTTGAGATAAAATCTAAGAGGAAAATATGTAGAAATTTTGATGTAAGACACTTTCGAAGGCATTCTTCTGAATTAGTCAGAAGGGGTTATTTTTCACAGAGGGCTCTCCTATTAGAAGGGCCCTTCTATCACAGCGGGACCTTCTGATGGAGTTTTATCAATTTCAGAATTTAATGACTTTCAGGAATCTTACAATCAGTTTTTTTTTCAAATTTCAGATATCTGGAATTCTTTCTTCAAATCTCGATTTTTCCAGAAATTT</canonical>
            <polymorphic>ATTTCGAAATTGCCGCGAATTTCCAAAATTTGCGAAATTCAGAAATTAAATTCTAAAATTCAAATTTTCAAAGAATTTAGAAGAAGCTAGAAGTTTCCAACTTACCGTAAAACCTGTATTAGAAGCCCTTATATTTTTCCAAGGTACCTCCGGAGGTCCCTTCTATTTTTACAGCCAGTTTTTTCCGAAATTTCCTCAAAGTTCATGAAAATCTGCCAATTTTACAAAAATTTAGCAAGAATTTCTTCGAAAATAGAGTTTCAACAAATTTCTATTAAATAGTGGAGTTCCCGGAATATTTTCCACTGAAAAAGTAATGAAATTTTCTGATTTCAAAACACATTTTGAAGGGGGGGGGGGTCATTTCTCACAGAGGGCCCTTCTATTACAGAGGACCCTCCTATTACAGGAGGCCCTACTATTTTCTAAGCCCCTCTCGGAGGGCCCTTCTATTAGAGGGACGCTTCCATAAGGGGTCCTTCTAATACAGGTTTTACGGYAGTTAAAAAATGTTGGAAAATTCAATAATTCTAAGATTCTAAAGTTCAGAAGTTTGGAAATTCGAAAATTCTGAAATTTTTGAAACTTTCAGAAAACAAAGAAAATTCCAAGAAAACATATGGGAAATTTGCAGAAAAAGATCAGGATCGAAAATGAATCAAAATCGAAAATCTTTAGAAAATCCAAAGAAAAATCGGAATAGATTTTGGCATGGATAACATCGAATTCTCCGGAAATTTTGAGATAAAATCTAAGAGGAAAATATGTAGAAATTTTGATGTAAGACACTTTCGAAGGCATTCTTCTGAATTAGTCAGAAGGGGTTATTTTTCACAGAGGGCTCTCCTATTAGAAGGGCCCTTCTATCACAGCGGGACCTTCTGATGGAGTTTTATCAATTTCAGAATTTAATGACTTTCAGGAATCTTACAATCAGTTTTTTTTTCAAATTTCAGATATCTGGAATTCTTTCTTCAAATCTCGATTTTTCCAGAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTACAGGAGGCCCTACTATTT</pcr_primer_p1>
		<pcr_primer_p2>TCGATCCTGATCTTTTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATTACAGGAGGCCCTACTATTTTCTAAGCCCCTCTCGGAGGGCCCTTCTATTAGAGGGACGCTTCCATAAGGGGTCCTTCTAATACAGGTTTTACGGCAGTTAAAAAATGTTGGAAAATTCAATAATTCTAAGATTCTAAAGTTCAGAAGTTTGGAAATTCGAAAATTCTGAAATTTTTGAAACTTTCAGAAAACAAAGAAAATTCCAAGAAAACATATGGGAAATTTGCAGAAAAAGATCAGGATCGA</canonical_amplicon>
		<polymorphic_amplicon>TATTACAGGAGGCCCTACTATTTTCTAAGCCCCTCTCGGAGGGCCCTTCTATTAGAGGGACGCTTCCATAAGGGGTCCTTCTAATACAGGTTTTACGGYAGTTAAAAAATGTTGGAAAATTCAATAATTCTAAGATTCTAAAGTTCAGAAGTTTGGAAATTCGAAAATTCTGAAATTTTTGAAACTTTCAGAAAACAAAGAAAATTCCAAGAAAACATATGGGAAATTTGCAGAAAAAGATCAGGATCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33375</snp_id>
        <super_contig>c008201393.Contig1</super_contig>
        <contig_pos>10755</contig_pos>
        <strand>+</strand>
        <context>AAGACACTTT[C/G]GAAGGCATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGATAAAATCTAAGAGGAAAATATGTAGAAATTTTGATGTAAGACACTTT</left_flank>
        <right_flank>GAAGGCATTCTTCTGAATTAGTCAGAAGGGGTTATTTTTCACAGAGGGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATATTTTCCACTGAAAAAGTAATGAAATTTTCTGATTTCAAAACACATTTTGAAGGGGGGGGGGGTCATTTCTCACAGAGGGCCCTTCTATTACAGAGGACCCTCCTATTACAGGAGGCCCTACTATTTTCTAAGCCCCTCTCGGAGGGCCCTTCTATTAGAGGGACGCTTCCATAAGGGGTCCTTCTAATACAGGTTTTACGGCAGTTAAAAAATGTTGGAAAATTCAATAATTCTAAGATTCTAAAGTTCAGAAGTTTGGAAATTCGAAAATTCTGAAATTTTTGAAACTTTCAGAAAACAAAGAAAATTCCAAGAAAACATATGGGAAATTTGCAGAAAAAGATCAGGATCGAAAATGAATCAAAATCGAAAATCTTTAGAAAATCCAAAGAAAAATCGGAATAGATTTTGGCATGGATAACATCGAATTCTCCGGAAATTTTGAGATAAAATCTAAGAGGAAAATATGTAGAAATTTTGATGTAAGACACTTTCGAAGGCATTCTTCTGAATTAGTCAGAAGGGGTTATTTTTCACAGAGGGCTCTCCTATTAGAAGGGCCCTTCTATCACAGCGGGACCTTCTGATGGAGTTTTATCAATTTCAGAATTTAATGACTTTCAGGAATCTTACAATCAGTTTTTTTTTCAAATTTCAGATATCTGGAATTCTTTCTTCAAATCTCGATTTTTCCAGAAATTTGTGAATTCCCGATTCACGTTTATACATAAATTTTCAAAATTTGTGGATATATTCTAGCCAATTTTTTCAAATTTTTTATTTGTTTTATGACTCGATAATCTTCGTTTTTGATTGACAGAAAAACGGGACAAACACCAACATTTTTGAGCTGATAAGAACTTTTTTCCGATTGATTTTTCATTTCGATTACTATTTTTGACCAAATTTTGGCAGGAATTTTTTTTCCGAACTTTTCTGGCCATTTCGAAAAAAATGACGGACCCTCCTGCAAAAAATTTTTCGATTCGCTTGGA</canonical>
            <polymorphic>GAATATTTTCCACTGAAAAAGTAATGAAATTTTCTGATTTCAAAACACATTTTGAAGGGGGGGGGGGTCATTTCTCACAGAGGGCCCTTCTATTACAGAGGACCCTCCTATTACAGGAGGCCCTACTATTTTCTAAGCCCCTCTCGGAGGGCCCTTCTATTAGAGGGACGCTTCCATAAGGGGTCCTTCTAATACAGGTTTTACGGCAGTTAAAAAATGTTGGAAAATTCAATAATTCTAAGATTCTAAAGTTCAGAAGTTTGGAAATTCGAAAATTCTGAAATTTTTGAAACTTTCAGAAAACAAAGAAAATTCCAAGAAAACATATGGGAAATTTGCAGAAAAAGATCAGGATCGAAAATGAATCAAAATCGAAAATCTTTAGAAAATCCAAAGAAAAATCGGAATAGATTTTGGCATGGATAACATCGAATTCTCCGGAAATTTTGAGATAAAATCTAAGAGGAAAATATGTAGAAATTTTGATGTAAGACACTTTSGAAGGCATTCTTCTGAATTAGTCAGAAGGGGTTATTTTTCACAGAGGGCTCTCCTATTAGAAGGGCCCTTCTATCACAGCGGGACCTTCTGATGGAGTTTTATCAATTTCAGAATTTAATGACTTTCAGGAATCTTACAATCAGTTTTTTTTTCAAATTTCAGATATCTGGAATTCTTTCTTCAAATCTCGATTTTTCCAGAAATTTGTGAATTCCCGATTCACGTTTATACATAAATTTTCAAAATTTGTGGATATATTCTAGCCAATTTTTTCAAATTTTTTATTTGTTTTATGACTCGATAATCTTCGTTTTTGATTGACAGAAAAACGGGACAAACACCAACATTTTTGAGCTGATAAGAACTTTTTTCCGATTGATTTTTCATTTCGATTACTATTTTTGACCAAATTTTGGCAGGAATTTTTTTTCCGAACTTTTCTGGCCATTTCGAAAAAAATGACGGACCCTCCTGCAAAAAATTTTTCGATTCGCTTGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>452 269 230 49</canonical_bands>
                <polymorphic_bands>682 269 49</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>270 190 110 91 86 70 61 57 36 17 12</canonical_bands>
                <polymorphic_bands>270 260 110 91 86 61 57 36 17 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAATCAAAATCGAAAATCTTTA</pcr_primer_p1>
		<pcr_primer_p2>GAAATTGATAAAACTCCATCAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAATCAAAATCGAAAATCTTTAGAAAATCCAAAGAAAAATCGGAATAGATTTTGGCATGGATAACATCGAATTCTCCGGAAATTTTGAGATAAAATCTAAGAGGAAAATATGTAGAAATTTTGATGTAAGACACTTTCGAAGGCATTCTTCTGAATTAGTCAGAAGGGGTTATTTTTCACAGAGGGCTCTCCTATTAGAAGGGCCCTTCTATCACAGCGGGACCTTCTGATGGAGTTTTATCAATTTC</canonical_amplicon>
		<polymorphic_amplicon>TGAATCAAAATCGAAAATCTTTAGAAAATCCAAAGAAAAATCGGAATAGATTTTGGCATGGATAACATCGAATTCTCCGGAAATTTTGAGATAAAATCTAAGAGGAAAATATGTAGAAATTTTGATGTAAGACACTTTSGAAGGCATTCTTCTGAATTAGTCAGAAGGGGTTATTTTTCACAGAGGGCTCTCCTATTAGAAGGGCCCTTCTATCACAGCGGGACCTTCTGATGGAGTTTTATCAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33376</snp_id>
        <super_contig>c008201393.Contig1</super_contig>
        <contig_pos>10768</contig_pos>
        <strand>+</strand>
        <context>AGGCATTCTT[C/T]TGAATTAGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGGAAAATATGTAGAAATTTTGATGTAAGACACTTTCGAAGGCATTCTT</left_flank>
        <right_flank>TGAATTAGTCAGAAGGGGTTATTTTTCACAGAGGGCTCTCCTATTAGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAAAAGTAATGAAATTTTCTGATTTCAAAACACATTTTGAAGGGGGGGGGGGTCATTTCTCACAGAGGGCCCTTCTATTACAGAGGACCCTCCTATTACAGGAGGCCCTACTATTTTCTAAGCCCCTCTCGGAGGGCCCTTCTATTAGAGGGACGCTTCCATAAGGGGTCCTTCTAATACAGGTTTTACGGCAGTTAAAAAATGTTGGAAAATTCAATAATTCTAAGATTCTAAAGTTCAGAAGTTTGGAAATTCGAAAATTCTGAAATTTTTGAAACTTTCAGAAAACAAAGAAAATTCCAAGAAAACATATGGGAAATTTGCAGAAAAAGATCAGGATCGAAAATGAATCAAAATCGAAAATCTTTAGAAAATCCAAAGAAAAATCGGAATAGATTTTGGCATGGATAACATCGAATTCTCCGGAAATTTTGAGATAAAATCTAAGAGGAAAATATGTAGAAATTTTGATGTAAGACACTTTCGAAGGCATTCTTCTGAATTAGTCAGAAGGGGTTATTTTTCACAGAGGGCTCTCCTATTAGAAGGGCCCTTCTATCACAGCGGGACCTTCTGATGGAGTTTTATCAATTTCAGAATTTAATGACTTTCAGGAATCTTACAATCAGTTTTTTTTTCAAATTTCAGATATCTGGAATTCTTTCTTCAAATCTCGATTTTTCCAGAAATTTGTGAATTCCCGATTCACGTTTATACATAAATTTTCAAAATTTGTGGATATATTCTAGCCAATTTTTTCAAATTTTTTATTTGTTTTATGACTCGATAATCTTCGTTTTTGATTGACAGAAAAACGGGACAAACACCAACATTTTTGAGCTGATAAGAACTTTTTTCCGATTGATTTTTCATTTCGATTACTATTTTTGACCAAATTTTGGCAGGAATTTTTTTTCCGAACTTTTCTGGCCATTTCGAAAAAAATGACGGACCCTCCTGCAAAAAATTTTTCGATTCGCTTGGAATTTCGAAATTTA</canonical>
            <polymorphic>TGAAAAAGTAATGAAATTTTCTGATTTCAAAACACATTTTGAAGGGGGGGGGGGTCATTTCTCACAGAGGGCCCTTCTATTACAGAGGACCCTCCTATTACAGGAGGCCCTACTATTTTCTAAGCCCCTCTCGGAGGGCCCTTCTATTAGAGGGACGCTTCCATAAGGGGTCCTTCTAATACAGGTTTTACGGCAGTTAAAAAATGTTGGAAAATTCAATAATTCTAAGATTCTAAAGTTCAGAAGTTTGGAAATTCGAAAATTCTGAAATTTTTGAAACTTTCAGAAAACAAAGAAAATTCCAAGAAAACATATGGGAAATTTGCAGAAAAAGATCAGGATCGAAAATGAATCAAAATCGAAAATCTTTAGAAAATCCAAAGAAAAATCGGAATAGATTTTGGCATGGATAACATCGAATTCTCCGGAAATTTTGAGATAAAATCTAAGAGGAAAATATGTAGAAATTTTGATGTAAGACACTTTCGAAGGCATTCTTYTGAATTAGTCAGAAGGGGTTATTTTTCACAGAGGGCTCTCCTATTAGAAGGGCCCTTCTATCACAGCGGGACCTTCTGATGGAGTTTTATCAATTTCAGAATTTAATGACTTTCAGGAATCTTACAATCAGTTTTTTTTTCAAATTTCAGATATCTGGAATTCTTTCTTCAAATCTCGATTTTTCCAGAAATTTGTGAATTCCCGATTCACGTTTATACATAAATTTTCAAAATTTGTGGATATATTCTAGCCAATTTTTTCAAATTTTTTATTTGTTTTATGACTCGATAATCTTCGTTTTTGATTGACAGAAAAACGGGACAAACACCAACATTTTTGAGCTGATAAGAACTTTTTTCCGATTGATTTTTCATTTCGATTACTATTTTTGACCAAATTTTGGCAGGAATTTTTTTTCCGAACTTTTCTGGCCATTTCGAAAAAAATGACGGACCCTCCTGCAAAAAATTTTTCGATTCGCTTGGAATTTCGAAATTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>212 111 110 109 106 80 66 59 51 24 22 21 19 10</canonical_bands>
                <polymorphic_bands>212 120 111 109 106 80 66 59 51 24 22 21 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAATCAAAATCGAAAATCTTTA</pcr_primer_p1>
		<pcr_primer_p2>GAAATTGATAAAACTCCATCAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAATCAAAATCGAAAATCTTTAGAAAATCCAAAGAAAAATCGGAATAGATTTTGGCATGGATAACATCGAATTCTCCGGAAATTTTGAGATAAAATCTAAGAGGAAAATATGTAGAAATTTTGATGTAAGACACTTTCGAAGGCATTCTTCTGAATTAGTCAGAAGGGGTTATTTTTCACAGAGGGCTCTCCTATTAGAAGGGCCCTTCTATCACAGCGGGACCTTCTGATGGAGTTTTATCAATTTC</canonical_amplicon>
		<polymorphic_amplicon>TGAATCAAAATCGAAAATCTTTAGAAAATCCAAAGAAAAATCGGAATAGATTTTGGCATGGATAACATCGAATTCTCCGGAAATTTTGAGATAAAATCTAAGAGGAAAATATGTAGAAATTTTGATGTAAGACACTTTCGAAGGCATTCTTYTGAATTAGTCAGAAGGGGTTATTTTTCACAGAGGGCTCTCCTATTAGAAGGGCCCTTCTATCACAGCGGGACCTTCTGATGGAGTTTTATCAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33377</snp_id>
        <super_contig>c008201416.Contig1</super_contig>
        <contig_pos>12430</contig_pos>
        <strand></strand>
        <context>CAACGTCATT[C/T]TTCGCATGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGTTTGTTCATGTCTCCTGACAATACGCCAAAAAAACGACAACGTCATT</left_flank>
        <right_flank>TTCGCATGAAAAGGATGAGTACTCATCGTCTAAGAAACGTAAATACCATG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGCCGATCGGCGATCGGCTAGTGCTGTTCGGATGTGTCAGCCGATCGGCGATCGGCTAGTGTGGTTCGGATGTGTCAGCCGATCGGCGATCGGCTAGTGTGGTTCGGATGTGTCAGCCGATCGGCGATCGGCTAGTGTGGTTCGGATGTGTCAGCCGATCGGCGATCGGCTAGTGTGGTTTGGATGTGTCAGCCGATCGGCGATCGGCCAGTGCTGTTCGGATGTGTCAGCCGATCGGCGATCGGCTAGTGCTGTTCGGATGTGTCAGCCGATCGGCGATCGGCTGCCTTACTGTTTTTGTTCTCAGTATATTTATATATTTCTTAACATCATTGTTTTTGAGATAATGTCTGACTCTTCGTTCTCCAACCTCTCCTCCTGCACGCCATCGCCTTAATCCTCTCCTAAGAAGAGCTCTACAGCCCCCGACGACGTTCTCAAAGAACTTGGTTTGTTCATGTCTCCTGACAATACGCCAAAAAAACGACAACGTCATTCTTCGCATGAAAAGGATGAGTACTCATCGTCTAAGAAACGTAAATACCATGATGATTCGGGAGTTGACCAAGTGAAAGTAGGAATCGACGGTCAAGATCAATACAAGGTACATAAAACTGAGGTTTAGTCATATATTCCAGTTTTTCTTTTTCAGGCAACTACAGTGACCATCAAACCATCTGATATTCGCAAGGCGGAAATGCGGGGATTCGTGCTTCGTGGATTCGATCAAAACATTTTCGACTCAGTCGCTAGTGTCTCCGCGCGCAATATGTTGCACCAGACAAAGACGCACTCGCCGATTTTTGTGGTTGCATTCAAAGAAAACCTCCAACAGATGGTAGTGTTGGAGGGAACCCATCGGGTCTTGTCCCTTATTTCAAGATTGGAAGAACCTGATCAAGAAGTGAGTAAAAAGCGTAGTGTGCCTCTCCAGCCTATCTGGATTTGTTAGGTTTTTCTAGCTAACATTTCTAGCCGATCGGCGATCGGCTGCACTG</canonical>
            <polymorphic>TCAGCCGATCGGCGATCGGCTAGTGCTGTTCGGATGTGTCAGCCGATCGGCGATCGGCTAGTGTGGTTCGGATGTGTCAGCCGATCGGCGATCGGCTAGTGTGGTTCGGATGTGTCAGCCGATCGGCGATCGGCTAGTGTGGTTCGGATGTGTCAGCCGATCGGCGATCGGCTAGTGTGGTTTGGATGTGTCAGCCGATCGGCGATCGGCCAGTGCTGTTCGGATGTGTCAGCCGATCGGCGATCGGCTAGTGCTGTTCGGATGTGTCAGCCGATCGGCGATCGGCTGCCTTACTGTTTTTGTTCTCAGTATATTTATATATTTCTTAACATCATTGTTTTTGAGATAATGTCTGACTCTTCGTTCTCCAACCTCTCCTCCTGCACGCCATCGCCTTAATCCTCTCCTAAGAAGAGCTCTACAGCCCCCGACGACGTTCTCAAAGAACTTGGTTTGTTCATGTCTCCTGACAATACGCCAAAAAAACGACAACGTCATTYTTCGCATGAAAAGGATGAGTACTCATCGTCTAAGAAACGTAAATACCATGATGATTCGGGAGTTGACCAAGTGAAAGTAGGAATCGACGGTCAAGATCAATACAAGGTACATAAAACTGAGGTTTAGTCATATATTCCAGTTTTTCTTTTTCAGGCAACTACAGTGACCATCAAACCATCTGATATTCGCAAGGCGGAAATGCGGGGATTCGTGCTTCGTGGATTCGATCAAAACATTTTCGACTCAGTCGCTAGTGTCTCCGCGCGCAATATGTTGCACCAGACAAAGACGCACTCGCCGATTTTTGTGGTTGCATTCAAAGAAAACCTCCAACAGATGGTAGTGTTGGAGGGAACCCATCGGGTCTTGTCCCTTATTTCAAGATTGGAAGAACCTGATCAAGAAGTGAGTAAAAAGCGTAGTGTGCCTCTCCAGCCTATCTGGATTTGTTAGGTTTTTCTAGCTAACATTTCTAGCCGATCGGCGATCGGCTGCACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTTTGAGATAATGTCTGACTC</pcr_primer_p1>
		<pcr_primer_p2>GATTCCTACTTTCACTTGGTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTTTTTGAGATAATGTCTGACTCTTCGTTCTCCAACCTCTCCTCCTGCACGCCATCGCCTTAATCCTCTCCTAAGAAGAGCTCTACAGCCCCCGACGACGTTCTCAAAGAACTTGGTTTGTTCATGTCTCCTGACAATACGCCAAAAAAACGACAACGTCATTCTTCGCATGAAAAGGATGAGTACTCATCGTCTAAGAAACGTAAATACCATGATGATTCGGGAGTTGACCAAGTGAAAGTAGGAATC</canonical_amplicon>
		<polymorphic_amplicon>TGTTTTTGAGATAATGTCTGACTCTTCGTTCTCCAACCTCTCCTCCTGCACGCCATCGCCTTAATCCTCTCCTAAGAAGAGCTCTACAGCCCCCGACGACGTTCTCAAAGAACTTGGTTTGTTCATGTCTCCTGACAATACGCCAAAAAAACGACAACGTCATTYTTCGCATGAAAAGGATGAGTACTCATCGTCTAAGAAACGTAAATACCATGATGATTCGGGAGTTGACCAAGTGAAAGTAGGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33378</snp_id>
        <super_contig>c008201416.Contig1</super_contig>
        <contig_pos>12485</contig_pos>
        <strand></strand>
        <context>ACCATGATGA[T/A]TCGGGAGTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CATGAAAAGGATGAGTACTCATCGTCTAAGAAACGTAAATACCATGATGA</left_flank>
        <right_flank>TCGGGAGTTGACCAAGTGAAAGTAGGAATCGACGGTCAAGATCAATACAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCTAGTGTGGTTCGGATGTGTCAGCCGATCGGCGATCGGCTAGTGTGGTTCGGATGTGTCAGCCGATCGGCGATCGGCTAGTGTGGTTCGGATGTGTCAGCCGATCGGCGATCGGCTAGTGTGGTTTGGATGTGTCAGCCGATCGGCGATCGGCCAGTGCTGTTCGGATGTGTCAGCCGATCGGCGATCGGCTAGTGCTGTTCGGATGTGTCAGCCGATCGGCGATCGGCTGCCTTACTGTTTTTGTTCTCAGTATATTTATATATTTCTTAACATCATTGTTTTTGAGATAATGTCTGACTCTTCGTTCTCCAACCTCTCCTCCTGCACGCCATCGCCTTAATCCTCTCCTAAGAAGAGCTCTACAGCCCCCGACGACGTTCTCAAAGAACTTGGTTTGTTCATGTCTCCTGACAATACGCCAAAAAAACGACAACGTCATTCTTCGCATGAAAAGGATGAGTACTCATCGTCTAAGAAACGTAAATACCATGATGATTCGGGAGTTGACCAAGTGAAAGTAGGAATCGACGGTCAAGATCAATACAAGGTACATAAAACTGAGGTTTAGTCATATATTCCAGTTTTTCTTTTTCAGGCAACTACAGTGACCATCAAACCATCTGATATTCGCAAGGCGGAAATGCGGGGATTCGTGCTTCGTGGATTCGATCAAAACATTTTCGACTCAGTCGCTAGTGTCTCCGCGCGCAATATGTTGCACCAGACAAAGACGCACTCGCCGATTTTTGTGGTTGCATTCAAAGAAAACCTCCAACAGATGGTAGTGTTGGAGGGAACCCATCGGGTCTTGTCCCTTATTTCAAGATTGGAAGAACCTGATCAAGAAGTGAGTAAAAAGCGTAGTGTGCCTCTCCAGCCTATCTGGATTTGTTAGGTTTTTCTAGCTAACATTTCTAGCCGATCGGCGATCGGCTGCACTGTTCAACTTTTTTTCAACAATTATTCTTCAGGATTTCGATTTCGAGGCTGTCATTT</canonical>
            <polymorphic>GGCTAGTGTGGTTCGGATGTGTCAGCCGATCGGCGATCGGCTAGTGTGGTTCGGATGTGTCAGCCGATCGGCGATCGGCTAGTGTGGTTCGGATGTGTCAGCCGATCGGCGATCGGCTAGTGTGGTTTGGATGTGTCAGCCGATCGGCGATCGGCCAGTGCTGTTCGGATGTGTCAGCCGATCGGCGATCGGCTAGTGCTGTTCGGATGTGTCAGCCGATCGGCGATCGGCTGCCTTACTGTTTTTGTTCTCAGTATATTTATATATTTCTTAACATCATTGTTTTTGAGATAATGTCTGACTCTTCGTTCTCCAACCTCTCCTCCTGCACGCCATCGCCTTAATCCTCTCCTAAGAAGAGCTCTACAGCCCCCGACGACGTTCTCAAAGAACTTGGTTTGTTCATGTCTCCTGACAATACGCCAAAAAAACGACAACGTCATTCTTCGCATGAAAAGGATGAGTACTCATCGTCTAAGAAACGTAAATACCATGATGAWTCGGGAGTTGACCAAGTGAAAGTAGGAATCGACGGTCAAGATCAATACAAGGTACATAAAACTGAGGTTTAGTCATATATTCCAGTTTTTCTTTTTCAGGCAACTACAGTGACCATCAAACCATCTGATATTCGCAAGGCGGAAATGCGGGGATTCGTGCTTCGTGGATTCGATCAAAACATTTTCGACTCAGTCGCTAGTGTCTCCGCGCGCAATATGTTGCACCAGACAAAGACGCACTCGCCGATTTTTGTGGTTGCATTCAAAGAAAACCTCCAACAGATGGTAGTGTTGGAGGGAACCCATCGGGTCTTGTCCCTTATTTCAAGATTGGAAGAACCTGATCAAGAAGTGAGTAAAAAGCGTAGTGTGCCTCTCCAGCCTATCTGGATTTGTTAGGTTTTTCTAGCTAACATTTCTAGCCGATCGGCGATCGGCTGCACTGTTCAACTTTTTTTCAACAATTATTCTTCAGGATTTCGATTTCGAGGCTGTCATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>498 333 126 28 15</canonical_bands>
                <polymorphic_bands>526 333 126 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGAACTTGGTTTGTTCATGT</pcr_primer_p1>
		<pcr_primer_p2>GAATATCAGATGGTTTGATGGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAGAACTTGGTTTGTTCATGTCTCCTGACAATACGCCAAAAAAACGACAACGTCATTCTTCGCATGAAAAGGATGAGTACTCATCGTCTAAGAAACGTAAATACCATGATGATTCGGGAGTTGACCAAGTGAAAGTAGGAATCGACGGTCAAGATCAATACAAGGTACATAAAACTGAGGTTTAGTCATATATTCCAGTTTTTCTTTTTCAGGCAACTACAGTGACCATCAAACCATCTGATATTC</canonical_amplicon>
		<polymorphic_amplicon>AAAGAACTTGGTTTGTTCATGTCTCCTGACAATACGCCAAAAAAACGACAACGTCATTCTTCGCATGAAAAGGATGAGTACTCATCGTCTAAGAAACGTAAATACCATGATGAWTCGGGAGTTGACCAAGTGAAAGTAGGAATCGACGGTCAAGATCAATACAAGGTACATAAAACTGAGGTTTAGTCATATATTCCAGTTTTTCTTTTTCAGGCAACTACAGTGACCATCAAACCATCTGATATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33379</snp_id>
        <super_contig>c008201416.Contig1</super_contig>
        <contig_pos>12748</contig_pos>
        <strand></strand>
        <context>GTGGTTGCAT[T/C]CAAAGAAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAATATGTTGCACCAGACAAAGACGCACTCGCCGATTTTTGTGGTTGCAT</left_flank>
        <right_flank>CAAAGAAAACCTCCAACAGATGGTAGTGTTGGAGGGAACCCATCGGGTCT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATTTCTTAACATCATTGTTTTTGAGATAATGTCTGACTCTTCGTTCTCCAACCTCTCCTCCTGCACGCCATCGCCTTAATCCTCTCCTAAGAAGAGCTCTACAGCCCCCGACGACGTTCTCAAAGAACTTGGTTTGTTCATGTCTCCTGACAATACGCCAAAAAAACGACAACGTCATTCTTCGCATGAAAAGGATGAGTACTCATCGTCTAAGAAACGTAAATACCATGATGATTCGGGAGTTGACCAAGTGAAAGTAGGAATCGACGGTCAAGATCAATACAAGGTACATAAAACTGAGGTTTAGTCATATATTCCAGTTTTTCTTTTTCAGGCAACTACAGTGACCATCAAACCATCTGATATTCGCAAGGCGGAAATGCGGGGATTCGTGCTTCGTGGATTCGATCAAAACATTTTCGACTCAGTCGCTAGTGTCTCCGCGCGCAATATGTTGCACCAGACAAAGACGCACTCGCCGATTTTTGTGGTTGCATTCAAAGAAAACCTCCAACAGATGGTAGTGTTGGAGGGAACCCATCGGGTCTTGTCCCTTATTTCAAGATTGGAAGAACCTGATCAAGAAGTGAGTAAAAAGCGTAGTGTGCCTCTCCAGCCTATCTGGATTTGTTAGGTTTTTCTAGCTAACATTTCTAGCCGATCGGCGATCGGCTGCACTGTTCAACTTTTTTTCAACAATTATTCTTCAGGATTTCGATTTCGAGGCTGTCATTTATGAAACGTCGGATGACTTCGCTGGTATTTGGGATTCGTGTGTCGAGCTGGGAGTTGGACAGTCTGCAAAAGCTGATGTTTGTCGATTCCCACGCAAGATGATGCATTTGGTCCAAACAACATATGGTCGCGAGTTTGCAAAATCTTTGCTCGATTCTCGAAGAAGCAACAATCGGATGCATTGGCTATCATCCTCGACGAACATTTGGATTCCAAAACCAAGGAGAACATCCAAGCGGATTTTTACAAAAAGGACACGAACC</canonical>
            <polymorphic>ATATTTCTTAACATCATTGTTTTTGAGATAATGTCTGACTCTTCGTTCTCCAACCTCTCCTCCTGCACGCCATCGCCTTAATCCTCTCCTAAGAAGAGCTCTACAGCCCCCGACGACGTTCTCAAAGAACTTGGTTTGTTCATGTCTCCTGACAATACGCCAAAAAAACGACAACGTCATTCTTCGCATGAAAAGGATGAGTACTCATCGTCTAAGAAACGTAAATACCATGATGATTCGGGAGTTGACCAAGTGAAAGTAGGAATCGACGGTCAAGATCAATACAAGGTACATAAAACTGAGGTTTAGTCATATATTCCAGTTTTTCTTTTTCAGGCAACTACAGTGACCATCAAACCATCTGATATTCGCAAGGCGGAAATGCGGGGATTCGTGCTTCGTGGATTCGATCAAAACATTTTCGACTCAGTCGCTAGTGTCTCCGCGCGCAATATGTTGCACCAGACAAAGACGCACTCGCCGATTTTTGTGGTTGCATYCAAAGAAAACCTCCAACAGATGGTAGTGTTGGAGGGAACCCATCGGGTCTTGTCCCTTATTTCAAGATTGGAAGAACCTGATCAAGAAGTGAGTAAAAAGCGTAGTGTGCCTCTCCAGCCTATCTGGATTTGTTAGGTTTTTCTAGCTAACATTTCTAGCCGATCGGCGATCGGCTGCACTGTTCAACTTTTTTTCAACAATTATTCTTCAGGATTTCGATTTCGAGGCTGTCATTTATGAAACGTCGGATGACTTCGCTGGTATTTGGGATTCGTGTGTCGAGCTGGGAGTTGGACAGTCTGCAAAAGCTGATGTTTGTCGATTCCCACGCAAGATGATGCATTTGGTCCAAACAACATATGGTCGCGAGTTTGCAAAATCTTTGCTCGATTCTCGAAGAAGCAACAATCGGATGCATTGGCTATCATCCTCGACGAACATTTGGATTCCAAAACCAAGGAGAACATCCAAGCGGATTTTTACAAAAAGGACACGAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCATCAAACCATCTGATATT</pcr_primer_p1>
		<pcr_primer_p2>TTACTCACTTCTTGATCAGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GACCATCAAACCATCTGATATTCGCAAGGCGGAAATGCGGGGATTCGTGCTTCGTGGATTCGATCAAAACATTTTCGACTCAGTCGCTAGTGTCTCCGCGCGCAATATGTTGCACCAGACAAAGACGCACTCGCCGATTTTTGTGGTTGCATTCAAAGAAAACCTCCAACAGATGGTAGTGTTGGAGGGAACCCATCGGGTCTTGTCCCTTATTTCAAGATTGGAAGAACCTGATCAAGAAGTGAGTAA</canonical_amplicon>
		<polymorphic_amplicon>GACCATCAAACCATCTGATATTCGCAAGGCGGAAATGCGGGGATTCGTGCTTCGTGGATTCGATCAAAACATTTTCGACTCAGTCGCTAGTGTCTCCGCGCGCAATATGTTGCACCAGACAAAGACGCACTCGCCGATTTTTGTGGTTGCATYCAAAGAAAACCTCCAACAGATGGTAGTGTTGGAGGGAACCCATCGGGTCTTGTCCCTTATTTCAAGATTGGAAGAACCTGATCAAGAAGTGAGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33380</snp_id>
        <super_contig>c008201416.Contig1</super_contig>
        <contig_pos>16772</contig_pos>
        <strand>+</strand>
        <context>GGAAGGCTCA[C/T]AAGTGCCATA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACCTTCCCATCTAACAATACGTCATGACGACCTTGGTTGGGAAGGCTCA</left_flank>
        <right_flank>AAGTGCCATAATCTCCAGAAAAGTGTTCAGCCGTGACGAGGCGGAAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGAAACAAACCCCAAAGAAGAGGAAGTTCAGAAAATTTGATGCGCAGTAATTTTAGAACAGTTTTGGGGAAACAGAGAATAGGCTCCGAATAAAGAAATTACACAAAATTATTTCAAAAAGAAAAAAAAACCTTACCATTATCAAAACCCCCGTGAAGATGTGAATAGAATAGTATAGGATCAACGAATATTCAGTAAAATCAAAAAGGAGCTCCAAAATCCATTCATTCAGAGGATTTTTTGGAAAACTCCCAAAAAAGGTGAGACGTCTATTCGGTCAAGTCGTCTATGGGAAGAATGAAGGTGCGTCGAACGCAAAGGGTCGACTCGACCGTCCCATTGCCTGCCTCTCTTAGCCTCTTCTAAGTTCACACTATCTCCGCTTCGCCACCTGCTGTGTCACAATTTGTACGGACCGTTGGTTCATCACATATTGCGCTCTTTCTCACCTTCCCATCTAACAATACGTCATGACGACCTTGGTTGGGAAGGCTCATAAGTGCCATAATCTCCAGAAAAGTGTTCAGCCGTGACGAGGCGGAAAATTACACCACAAATTTCATAACGTTTAAACTAAGAAGAAATTTCAATAGCTTCATCCTGTAGCGATTACAATATTGCCCCCCCCCCCCCCCCCCCCGAAACATTTCAATATAACCCCCCTGGCATAGGCGTTGGAATACACCTCCACCCACCATTTTACGAAGGGAGGGAGGGGGGGATGAAAATGTTTTTCCTGATTTTTGCCTGTAGATCAAACGTACGAAGCCAAATTTCGCATAGAAAAAATCAAGTTGCATCGAATTTTTACCGGCATTTTGTTAGTTTTCTACAGATTTCCGTGTATTTTCTTGAATTTTTTTTGAATTCTTCCTGATTCCAGAAGTATATTCAATCGTGAATCTCGTGACGCTTAAGCTCAATTATCTTTTTTTTGAGTTTCTAATATCTATTATAGGAAGCGAGATAATTGAGCACAAGGTTTGCAAGTATGGTG</canonical>
            <polymorphic>AAAAGAAACAAACCCCAAAGAAGAGGAAGTTCAGAAAATTTGATGCGCAGTAATTTTAGAACAGTTTTGGGGAAACAGAGAATAGGCTCCGAATAAAGAAATTACACAAAATTATTTCAAAAAGAAAAAAAAACCTTACCATTATCAAAACCCCCGTGAAGATGTGAATAGAATAGTATAGGATCAACGAATATTCAGTAAAATCAAAAAGGAGCTCCAAAATCCATTCATTCAGAGGATTTTTTGGAAAACTCCCAAAAAAGGTGAGACGTCTATTCGGTCAAGTCGTCTATGGGAAGAATGAAGGTGCGTCGAACGCAAAGGGTCGACTCGACCGTCCCATTGCCTGCCTCTCTTAGCCTCTTCTAAGTTCACACTATCTCCGCTTCGCCACCTGCTGTGTCACAATTTGTACGGACCGTTGGTTCATCACATATTGCGCTCTTTCTCACCTTCCCATCTAACAATACGTCATGACGACCTTGGTTGGGAAGGCTCAYAAGTGCCATAATCTCCAGAAAAGTGTTCAGCCGTGACGAGGCGGAAAATTACACCACAAATTTCATAACGTTTAAACTAAGAAGAAATTTCAATAGCTTCATCCTGTAGCGATTACAATATTGCCCCCCCCCCCCCCCCCCCCGAAACATTTCAATATAACCCCCCTGGCATAGGCGTTGGAATACACCTCCACCCACCATTTTACGAAGGGAGGGAGGGGGGGATGAAAATGTTTTTCCTGATTTTTGCCTGTAGATCAAACGTACGAAGCCAAATTTCGCATAGAAAAAATCAAGTTGCATCGAATTTTTACCGGCATTTTGTTAGTTTTCTACAGATTTCCGTGTATTTTCTTGAATTTTTTTTGAATTCTTCCTGATTCCAGAAGTATATTCAATCGTGAATCTCGTGACGCTTAAGCTCAATTATCTTTTTTTTGAGTTTCTAATATCTATTATAGGAAGCGAGATAATTGAGCACAAGGTTTGCAAGTATGGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTAGCCTCTTCTAAGTTCACA</pcr_primer_p1>
		<pcr_primer_p2>TGAAGCTATTGAAATTTCTTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTTAGCCTCTTCTAAGTTCACACTATCTCCGCTTCGCCACCTGCTGTGTCACAATTTGTACGGACCGTTGGTTCATCACATATTGCGCTCTTTCTCACCTTCCCATCTAACAATACGTCATGACGACCTTGGTTGGGAAGGCTCATAAGTGCCATAATCTCCAGAAAAGTGTTCAGCCGTGACGAGGCGGAAAATTACACCACAAATTTCATAACGTTTAAACTAAGAAGAAATTTCAATAGCTTCA</canonical_amplicon>
		<polymorphic_amplicon>TCTTAGCCTCTTCTAAGTTCACACTATCTCCGCTTCGCCACCTGCTGTGTCACAATTTGTACGGACCGTTGGTTCATCACATATTGCGCTCTTTCTCACCTTCCCATCTAACAATACGTCATGACGACCTTGGTTGGGAAGGCTCAYAAGTGCCATAATCTCCAGAAAAGTGTTCAGCCGTGACGAGGCGGAAAATTACACCACAAATTTCATAACGTTTAAACTAAGAAGAAATTTCAATAGCTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33381</snp_id>
        <super_contig>c008201416.Contig1</super_contig>
        <contig_pos>16813</contig_pos>
        <strand>+</strand>
        <context>CCGTGACGAG[A/G]CGRAAAATTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGGCTCATAAGTGCCATAATCTCCAGAAAAGTGTTCAGCCGTGACGAG</left_flank>
        <right_flank>CGGAAAATTACACCACAAATTTCATAACGTTTAAACTAAGAAGAAATTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGCGCAGTAATTTTAGAACAGTTTTGGGGAAACAGAGAATAGGCTCCGAATAAAGAAATTACACAAAATTATTTCAAAAAGAAAAAAAAACCTTACCATTATCAAAACCCCCGTGAAGATGTGAATAGAATAGTATAGGATCAACGAATATTCAGTAAAATCAAAAAGGAGCTCCAAAATCCATTCATTCAGAGGATTTTTTGGAAAACTCCCAAAAAAGGTGAGACGTCTATTCGGTCAAGTCGTCTATGGGAAGAATGAAGGTGCGTCGAACGCAAAGGGTCGACTCGACCGTCCCATTGCCTGCCTCTCTTAGCCTCTTCTAAGTTCACACTATCTCCGCTTCGCCACCTGCTGTGTCACAATTTGTACGGACCGTTGGTTCATCACATATTGCGCTCTTTCTCACCTTCCCATCTAACAATACGTCATGACGACCTTGGTTGGGAAGGCTCATAAGTGCCATAATCTCCAGAAAAGTGTTCAGCCGTGACGAGGCGGAAAATTACACCACAAATTTCATAACGTTTAAACTAAGAAGAAATTTCAATAGCTTCATCCTGTAGCGATTACAATATTGCCCCCCCCCCCCCCCCCCCCGAAACATTTCAATATAACCCCCCTGGCATAGGCGTTGGAATACACCTCCACCCACCATTTTACGAAGGGAGGGAGGGGGGGATGAAAATGTTTTTCCTGATTTTTGCCTGTAGATCAAACGTACGAAGCCAAATTTCGCATAGAAAAAATCAAGTTGCATCGAATTTTTACCGGCATTTTGTTAGTTTTCTACAGATTTCCGTGTATTTTCTTGAATTTTTTTTGAATTCTTCCTGATTCCAGAAGTATATTCAATCGTGAATCTCGTGACGCTTAAGCTCAATTATCTTTTTTTTGAGTTTCTAATATCTATTATAGGAAGCGAGATAATTGAGCACAAGGTTTGCAAGTATGGTGGTGAGGTGAGGTGGTGTAACCAGCGGTGCCAAACAAGCCTT</canonical>
            <polymorphic>GATGCGCAGTAATTTTAGAACAGTTTTGGGGAAACAGAGAATAGGCTCCGAATAAAGAAATTACACAAAATTATTTCAAAAAGAAAAAAAAACCTTACCATTATCAAAACCCCCGTGAAGATGTGAATAGAATAGTATAGGATCAACGAATATTCAGTAAAATCAAAAAGGAGCTCCAAAATCCATTCATTCAGAGGATTTTTTGGAAAACTCCCAAAAAAGGTGAGACGTCTATTCGGTCAAGTCGTCTATGGGAAGAATGAAGGTGCGTCGAACGCAAAGGGTCGACTCGACCGTCCCATTGCCTGCCTCTCTTAGCCTCTTCTAAGTTCACACTATCTCCGCTTCGCCACCTGCTGTGTCACAATTTGTACGGACCGTTGGTTCATCACATATTGCGCTCTTTCTCACCTTCCCATCTAACAATACGTCATGACGACCTTGGTTGGGAAGGCTCATAAGTGCCATAATCTCCAGAAAAGTGTTCAGCCGTGACGAGRCGGAAAATTACACCACAAATTTCATAACGTTTAAACTAAGAAGAAATTTCAATAGCTTCATCCTGTAGCGATTACAATATTGCCCCCCCCCCCCCCCCCCCCGAAACATTTCAATATAACCCCCCTGGCATAGGCGTTGGAATACACCTCCACCCACCATTTTACGAAGGGAGGGAGGGGGGGATGAAAATGTTTTTCCTGATTTTTGCCTGTAGATCAAACGTACGAAGCCAAATTTCGCATAGAAAAAATCAAGTTGCATCGAATTTTTACCGGCATTTTGTTAGTTTTCTACAGATTTCCGTGTATTTTCTTGAATTTTTTTTGAATTCTTCCTGATTCCAGAAGTATATTCAATCGTGAATCTCGTGACGCTTAAGCTCAATTATCTTTTTTTTGAGTTTCTAATATCTATTATAGGAAGCGAGATAATTGAGCACAAGGTTTGCAAGTATGGTGGTGAGGTGAGGTGGTGTAACCAGCGGTGCCAAACAAGCCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 342 157</canonical_bands>
                <polymorphic_bands>658 342</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>370 227 219 134 50</canonical_bands>
                <polymorphic_bands>370 227 219 184</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTAGCCTCTTCTAAGTTCACA</pcr_primer_p1>
		<pcr_primer_p2>TGAAGCTATTGAAATTTCTTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTTAGCCTCTTCTAAGTTCACACTATCTCCGCTTCGCCACCTGCTGTGTCACAATTTGTACGGACCGTTGGTTCATCACATATTGCGCTCTTTCTCACCTTCCCATCTAACAATACGTCATGACGACCTTGGTTGGGAAGGCTCATAAGTGCCATAATCTCCAGAAAAGTGTTCAGCCGTGACGAGGCGGAAAATTACACCACAAATTTCATAACGTTTAAACTAAGAAGAAATTTCAATAGCTTCA</canonical_amplicon>
		<polymorphic_amplicon>TCTTAGCCTCTTCTAAGTTCACACTATCTCCGCTTCGCCACCTGCTGTGTCACAATTTGTACGGACCGTTGGTTCATCACATATTGCGCTCTTTCTCACCTTCCCATCTAACAATACGTCATGACGACCTTGGTTGGGAAGGCTCATAAGTGCCATAATCTCCAGAAAAGTGTTCAGCCGTGACGAGRCGGAAAATTACACCACAAATTTCATAACGTTTAAACTAAGAAGAAATTTCAATAGCTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33382</snp_id>
        <super_contig>c008201416.Contig1</super_contig>
        <contig_pos>16816</contig_pos>
        <strand>+</strand>
        <context>TGACGAGRCG[A/G]AAAATTACAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGCTCATAAGTGCCATAATCTCCAGAAAAGTGTTCAGCCGTGACGAGGCG</left_flank>
        <right_flank>AAAATTACACCACAAATTTCATAACGTTTAAACTAAGAAGAAATTTCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGCAGTAATTTTAGAACAGTTTTGGGGAAACAGAGAATAGGCTCCGAATAAAGAAATTACACAAAATTATTTCAAAAAGAAAAAAAAACCTTACCATTATCAAAACCCCCGTGAAGATGTGAATAGAATAGTATAGGATCAACGAATATTCAGTAAAATCAAAAAGGAGCTCCAAAATCCATTCATTCAGAGGATTTTTTGGAAAACTCCCAAAAAAGGTGAGACGTCTATTCGGTCAAGTCGTCTATGGGAAGAATGAAGGTGCGTCGAACGCAAAGGGTCGACTCGACCGTCCCATTGCCTGCCTCTCTTAGCCTCTTCTAAGTTCACACTATCTCCGCTTCGCCACCTGCTGTGTCACAATTTGTACGGACCGTTGGTTCATCACATATTGCGCTCTTTCTCACCTTCCCATCTAACAATACGTCATGACGACCTTGGTTGGGAAGGCTCATAAGTGCCATAATCTCCAGAAAAGTGTTCAGCCGTGACGAGGCGGAAAATTACACCACAAATTTCATAACGTTTAAACTAAGAAGAAATTTCAATAGCTTCATCCTGTAGCGATTACAATATTGCCCCCCCCCCCCCCCCCCCCGAAACATTTCAATATAACCCCCCTGGCATAGGCGTTGGAATACACCTCCACCCACCATTTTACGAAGGGAGGGAGGGGGGGATGAAAATGTTTTTCCTGATTTTTGCCTGTAGATCAAACGTACGAAGCCAAATTTCGCATAGAAAAAATCAAGTTGCATCGAATTTTTACCGGCATTTTGTTAGTTTTCTACAGATTTCCGTGTATTTTCTTGAATTTTTTTTGAATTCTTCCTGATTCCAGAAGTATATTCAATCGTGAATCTCGTGACGCTTAAGCTCAATTATCTTTTTTTTGAGTTTCTAATATCTATTATAGGAAGCGAGATAATTGAGCACAAGGTTTGCAAGTATGGTGGTGAGGTGAGGTGGTGTAACCAGCGGTGCCAAACAAGCCTTTTT</canonical>
            <polymorphic>GCGCAGTAATTTTAGAACAGTTTTGGGGAAACAGAGAATAGGCTCCGAATAAAGAAATTACACAAAATTATTTCAAAAAGAAAAAAAAACCTTACCATTATCAAAACCCCCGTGAAGATGTGAATAGAATAGTATAGGATCAACGAATATTCAGTAAAATCAAAAAGGAGCTCCAAAATCCATTCATTCAGAGGATTTTTTGGAAAACTCCCAAAAAAGGTGAGACGTCTATTCGGTCAAGTCGTCTATGGGAAGAATGAAGGTGCGTCGAACGCAAAGGGTCGACTCGACCGTCCCATTGCCTGCCTCTCTTAGCCTCTTCTAAGTTCACACTATCTCCGCTTCGCCACCTGCTGTGTCACAATTTGTACGGACCGTTGGTTCATCACATATTGCGCTCTTTCTCACCTTCCCATCTAACAATACGTCATGACGACCTTGGTTGGGAAGGCTCATAAGTGCCATAATCTCCAGAAAAGTGTTCAGCCGTGACGAGGCGRAAAATTACACCACAAATTTCATAACGTTTAAACTAAGAAGAAATTTCAATAGCTTCATCCTGTAGCGATTACAATATTGCCCCCCCCCCCCCCCCCCCCGAAACATTTCAATATAACCCCCCTGGCATAGGCGTTGGAATACACCTCCACCCACCATTTTACGAAGGGAGGGAGGGGGGGATGAAAATGTTTTTCCTGATTTTTGCCTGTAGATCAAACGTACGAAGCCAAATTTCGCATAGAAAAAATCAAGTTGCATCGAATTTTTACCGGCATTTTGTTAGTTTTCTACAGATTTCCGTGTATTTTCTTGAATTTTTTTTGAATTCTTCCTGATTCCAGAAGTATATTCAATCGTGAATCTCGTGACGCTTAAGCTCAATTATCTTTTTTTTGAGTTTCTAATATCTATTATAGGAAGCGAGATAATTGAGCACAAGGTTTGCAAGTATGGTGGTGAGGTGAGGTGGTGTAACCAGCGGTGCCAAACAAGCCTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>504 339 157</canonical_bands>
                <polymorphic_bands>661 339</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTAGCCTCTTCTAAGTTCACA</pcr_primer_p1>
		<pcr_primer_p2>TGAAGCTATTGAAATTTCTTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTTAGCCTCTTCTAAGTTCACACTATCTCCGCTTCGCCACCTGCTGTGTCACAATTTGTACGGACCGTTGGTTCATCACATATTGCGCTCTTTCTCACCTTCCCATCTAACAATACGTCATGACGACCTTGGTTGGGAAGGCTCATAAGTGCCATAATCTCCAGAAAAGTGTTCAGCCGTGACGAGGCGGAAAATTACACCACAAATTTCATAACGTTTAAACTAAGAAGAAATTTCAATAGCTTCA</canonical_amplicon>
		<polymorphic_amplicon>TCTTAGCCTCTTCTAAGTTCACACTATCTCCGCTTCGCCACCTGCTGTGTCACAATTTGTACGGACCGTTGGTTCATCACATATTGCGCTCTTTCTCACCTTCCCATCTAACAATACGTCATGACGACCTTGGTTGGGAAGGCTCATAAGTGCCATAATCTCCAGAAAAGTGTTCAGCCGTGACGAGGCGRAAAATTACACCACAAATTTCATAACGTTTAAACTAAGAAGAAATTTCAATAGCTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33383</snp_id>
        <super_contig>c008201416.Contig1</super_contig>
        <contig_pos>16845</contig_pos>
        <strand>+</strand>
        <context>TCATAACGTT[A/T]AAACTAAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGTTCAGCCGTGACGAGGCGGAAAATTACACCACAAATTTCATAACGTT</left_flank>
        <right_flank>AAACTAAGAAGAAATTTCAATAGCTTCATCCTGTAGCGATTACAATATTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAGAGAATAGGCTCCGAATAAAGAAATTACACAAAATTATTTCAAAAAGAAAAAAAAACCTTACCATTATCAAAACCCCCGTGAAGATGTGAATAGAATAGTATAGGATCAACGAATATTCAGTAAAATCAAAAAGGAGCTCCAAAATCCATTCATTCAGAGGATTTTTTGGAAAACTCCCAAAAAAGGTGAGACGTCTATTCGGTCAAGTCGTCTATGGGAAGAATGAAGGTGCGTCGAACGCAAAGGGTCGACTCGACCGTCCCATTGCCTGCCTCTCTTAGCCTCTTCTAAGTTCACACTATCTCCGCTTCGCCACCTGCTGTGTCACAATTTGTACGGACCGTTGGTTCATCACATATTGCGCTCTTTCTCACCTTCCCATCTAACAATACGTCATGACGACCTTGGTTGGGAAGGCTCATAAGTGCCATAATCTCCAGAAAAGTGTTCAGCCGTGACGAGGCGGAAAATTACACCACAAATTTCATAACGTTTAAACTAAGAAGAAATTTCAATAGCTTCATCCTGTAGCGATTACAATATTGCCCCCCCCCCCCCCCCCCCCGAAACATTTCAATATAACCCCCCTGGCATAGGCGTTGGAATACACCTCCACCCACCATTTTACGAAGGGAGGGAGGGGGGGATGAAAATGTTTTTCCTGATTTTTGCCTGTAGATCAAACGTACGAAGCCAAATTTCGCATAGAAAAAATCAAGTTGCATCGAATTTTTACCGGCATTTTGTTAGTTTTCTACAGATTTCCGTGTATTTTCTTGAATTTTTTTTGAATTCTTCCTGATTCCAGAAGTATATTCAATCGTGAATCTCGTGACGCTTAAGCTCAATTATCTTTTTTTTGAGTTTCTAATATCTATTATAGGAAGCGAGATAATTGAGCACAAGGTTTGCAAGTATGGTGGTGAGGTGAGGTGGTGTAACCAGCGGTGCCAAACAAGCCTTTTTGAGTTCAATTATCTCGGTTTTGTCAAGAG</canonical>
            <polymorphic>AACAGAGAATAGGCTCCGAATAAAGAAATTACACAAAATTATTTCAAAAAGAAAAAAAAACCTTACCATTATCAAAACCCCCGTGAAGATGTGAATAGAATAGTATAGGATCAACGAATATTCAGTAAAATCAAAAAGGAGCTCCAAAATCCATTCATTCAGAGGATTTTTTGGAAAACTCCCAAAAAAGGTGAGACGTCTATTCGGTCAAGTCGTCTATGGGAAGAATGAAGGTGCGTCGAACGCAAAGGGTCGACTCGACCGTCCCATTGCCTGCCTCTCTTAGCCTCTTCTAAGTTCACACTATCTCCGCTTCGCCACCTGCTGTGTCACAATTTGTACGGACCGTTGGTTCATCACATATTGCGCTCTTTCTCACCTTCCCATCTAACAATACGTCATGACGACCTTGGTTGGGAAGGCTCATAAGTGCCATAATCTCCAGAAAAGTGTTCAGCCGTGACGAGGCGGAAAATTACACCACAAATTTCATAACGTTWAAACTAAGAAGAAATTTCAATAGCTTCATCCTGTAGCGATTACAATATTGCCCCCCCCCCCCCCCCCCCCGAAACATTTCAATATAACCCCCCTGGCATAGGCGTTGGAATACACCTCCACCCACCATTTTACGAAGGGAGGGAGGGGGGGATGAAAATGTTTTTCCTGATTTTTGCCTGTAGATCAAACGTACGAAGCCAAATTTCGCATAGAAAAAATCAAGTTGCATCGAATTTTTACCGGCATTTTGTTAGTTTTCTACAGATTTCCGTGTATTTTCTTGAATTTTTTTTGAATTCTTCCTGATTCCAGAAGTATATTCAATCGTGAATCTCGTGACGCTTAAGCTCAATTATCTTTTTTTTGAGTTTCTAATATCTATTATAGGAAGCGAGATAATTGAGCACAAGGTTTGCAAGTATGGTGGTGAGGTGAGGTGGTGTAACCAGCGGTGCCAAACAAGCCTTTTTGAGTTCAATTATCTCGGTTTTGTCAAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>499 345 156</canonical_bands>
                <polymorphic_bands>844 156</polymorphic_bands>
            </assay>
            <assay>
                <site>GTTTAAAC</site>
                <isoschizomers>
                    <enzyme>MssI</enzyme>
                    <enzyme>PmeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATAATCTCCAGAAAAGTGTTCA</pcr_primer_p1>
		<pcr_primer_p2>GCAAAAATCAGGAAAAACATT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CATAATCTCCAGAAAAGTGTTCAGCCGTGACGAGGCGGAAAATTACACCACAAATTTCATAACGTTTAAACTAAGAAGAAATTTCAATAGCTTCATCCTGTAGCGATTACAATATTGCCCCCCCCCCCCCCCCCCCCGAAACATTTCAATATAACCCCCCTGGCATAGGCGTTGGAATACACCTCCACCCACCATTTTACGAAGGGAGGGAGGGGGGGATGAAAATGTTTTTCCTGATTTTTGC</canonical_amplicon>
		<polymorphic_amplicon>CATAATCTCCAGAAAAGTGTTCAGCCGTGACGAGGCGGAAAATTACACCACAAATTTCATAACGTTWAAACTAAGAAGAAATTTCAATAGCTTCATCCTGTAGCGATTACAATATTGCCCCCCCCCCCCCCCCCCCCGAAACATTTCAATATAACCCCCCTGGCATAGGCGTTGGAATACACCTCCACCCACCATTTTACGAAGGGAGGGAGGGGGGGATGAAAATGTTTTTCCTGATTTTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33384</snp_id>
        <super_contig>c008201416.Contig1</super_contig>
        <contig_pos>23636</contig_pos>
        <strand>+</strand>
        <context>ACAAGTCGAA[C/T]TTATTGTGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGATAACACAAAAAAGGCGCTCACTTCTTTCACTTTTTTTACAAGTCGAA</left_flank>
        <right_flank>TTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTATATACTATAATCTTTTTGTCGTACCACACCGTAGTTTTGGTCACTCCATGATTCATCCAGAAGGAGACCCCTCGATAGACAGTCTTCAATAGGAAGCAAATAAAATATTTTTTAATATATGACGGAAAGAGATACGATATGTATGTAGAAATTTTGTATGACAGTAGAGATAGAGTAGAGATAAAAACATGTGAATAGTAACAAGGTTGGGAGAGGAGGCTTGCTATCAAATAGTTTACTAGTAAGAAAAATGATACTTAAAATAAAAGCTCCAAAATTCGACAATGATCATACTTCATAAAAAGGCTCCTCGGCCACACGACACTGTGTCATGTTGAATCGGATATCCCGCATAATGGCATTCTCTGTGTTGGAGATGTCACTGGAAGAGTTGTTCCCTGCTCCAGTCACTAGGGATACATCTGAAAAAAGGTAAAATTTTTAGATAACACAAAAAAGGCGCTCACTTCTTTCACTTTTTTTACAAGTCGAATTTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATTGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACAT</canonical>
            <polymorphic>TTTTTATATACTATAATCTTTTTGTCGTACCACACCGTAGTTTTGGTCACTCCATGATTCATCCAGAAGGAGACCCCTCGATAGACAGTCTTCAATAGGAAGCAAATAAAATATTTTTTAATATATGACGGAAAGAGATACGATATGTATGTAGAAATTTTGTATGACAGTAGAGATAGAGTAGAGATAAAAACATGTGAATAGTAACAAGGTTGGGAGAGGAGGCTTGCTATCAAATAGTTTACTAGTAAGAAAAATGATACTTAAAATAAAAGCTCCAAAATTCGACAATGATCATACTTCATAAAAAGGCTCCTCGGCCACACGACACTGTGTCATGTTGAATCGGATATCCCGCATAATGGCATTCTCTGTGTTGGAGATGTCACTGGAAGAGTTGTTCCCTGCTCCAGTCACTAGGGATACATCTGAAAAAAGGTAAAATTTTTAGATAACACAAAAAAGGCGCTCACTTCTTTCACTTTTTTTACAAGTCGAAYTTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATTGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>474 161 155 126 55 29</canonical_bands>
                <polymorphic_bands>529 161 155 126 29</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>336 161 155 126 116 55 22 20 9</canonical_bands>
                <polymorphic_bands>336 171 161 155 126 22 20 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTCTCTGTGTTGGAGATGT</pcr_primer_p1>
		<pcr_primer_p2>TTCATTTTTAGAAAAAGCTGACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTCTCTGTGTTGGAGATGTCACTGGAAGAGTTGTTCCCTGCTCCAGTCACTAGGGATACATCTGAAAAAAGGTAAAATTTTTAGATAACACAAAAAAGGCGCTCACTTCTTTCACTTTTTTTACAAGTCGAATTTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAA</canonical_amplicon>
		<polymorphic_amplicon>CATTCTCTGTGTTGGAGATGTCACTGGAAGAGTTGTTCCCTGCTCCAGTCACTAGGGATACATCTGAAAAAAGGTAAAATTTTTAGATAACACAAAAAAGGCGCTCACTTCTTTCACTTTTTTTACAAGTCGAAYTTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33385</snp_id>
        <super_contig>c008201416.Contig1</super_contig>
        <contig_pos>23670</contig_pos>
        <strand>+</strand>
        <context>GTTGAATGCC[C/T]GAGCTTCTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTACAAGTCGAATTTATTGTGCTGGTTTCTCTTCTGGTTGAATGCC</left_flank>
        <right_flank>GAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGTAGTTTTGGTCACTCCATGATTCATCCAGAAGGAGACCCCTCGATAGACAGTCTTCAATAGGAAGCAAATAAAATATTTTTTAATATATGACGGAAAGAGATACGATATGTATGTAGAAATTTTGTATGACAGTAGAGATAGAGTAGAGATAAAAACATGTGAATAGTAACAAGGTTGGGAGAGGAGGCTTGCTATCAAATAGTTTACTAGTAAGAAAAATGATACTTAAAATAAAAGCTCCAAAATTCGACAATGATCATACTTCATAAAAAGGCTCCTCGGCCACACGACACTGTGTCATGTTGAATCGGATATCCCGCATAATGGCATTCTCTGTGTTGGAGATGTCACTGGAAGAGTTGTTCCCTGCTCCAGTCACTAGGGATACATCTGAAAAAAGGTAAAATTTTTAGATAACACAAAAAAGGCGCTCACTTCTTTCACTTTTTTTACAAGTCGAATTTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATTGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGAGATTAAAAATGCAATGAAAACAAT</canonical>
            <polymorphic>CCGTAGTTTTGGTCACTCCATGATTCATCCAGAAGGAGACCCCTCGATAGACAGTCTTCAATAGGAAGCAAATAAAATATTTTTTAATATATGACGGAAAGAGATACGATATGTATGTAGAAATTTTGTATGACAGTAGAGATAGAGTAGAGATAAAAACATGTGAATAGTAACAAGGTTGGGAGAGGAGGCTTGCTATCAAATAGTTTACTAGTAAGAAAAATGATACTTAAAATAAAAGCTCCAAAATTCGACAATGATCATACTTCATAAAAAGGCTCCTCGGCCACACGACACTGTGTCATGTTGAATCGGATATCCCGCATAATGGCATTCTCTGTGTTGGAGATGTCACTGGAAGAGTTGTTCCCTGCTCCAGTCACTAGGGATACATCTGAAAAAAGGTAAAATTTTTAGATAACACAAAAAAGGCGCTCACTTCTTTCACTTTTTTTACAAGTCGAATTTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCYGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATTGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGAGATTAAAAATGCAATGAAAACAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>499 366 105 30</canonical_bands>
                <polymorphic_bands>529 366 105</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTCTCTGTGTTGGAGATGT</pcr_primer_p1>
		<pcr_primer_p2>TTCATTTTTAGAAAAAGCTGACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTCTCTGTGTTGGAGATGTCACTGGAAGAGTTGTTCCCTGCTCCAGTCACTAGGGATACATCTGAAAAAAGGTAAAATTTTTAGATAACACAAAAAAGGCGCTCACTTCTTTCACTTTTTTTACAAGTCGAATTTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAA</canonical_amplicon>
		<polymorphic_amplicon>CATTCTCTGTGTTGGAGATGTCACTGGAAGAGTTGTTCCCTGCTCCAGTCACTAGGGATACATCTGAAAAAAGGTAAAATTTTTAGATAACACAAAAAAGGCGCTCACTTCTTTCACTTTTTTTACAAGTCGAATTTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCYGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33386</snp_id>
        <super_contig>c008201416.Contig1</super_contig>
        <contig_pos>23712</contig_pos>
        <strand>+</strand>
        <context>AGCAGTTGTT[A/G]CCTTGTCGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTT</left_flank>
        <right_flank>CCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCGATAGACAGTCTTCAATAGGAAGCAAATAAAATATTTTTTAATATATGACGGAAAGAGATACGATATGTATGTAGAAATTTTGTATGACAGTAGAGATAGAGTAGAGATAAAAACATGTGAATAGTAACAAGGTTGGGAGAGGAGGCTTGCTATCAAATAGTTTACTAGTAAGAAAAATGATACTTAAAATAAAAGCTCCAAAATTCGACAATGATCATACTTCATAAAAAGGCTCCTCGGCCACACGACACTGTGTCATGTTGAATCGGATATCCCGCATAATGGCATTCTCTGTGTTGGAGATGTCACTGGAAGAGTTGTTCCCTGCTCCAGTCACTAGGGATACATCTGAAAAAAGGTAAAATTTTTAGATAACACAAAAAAGGCGCTCACTTCTTTCACTTTTTTTACAAGTCGAATTTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATTGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTT</canonical>
            <polymorphic>CTCGATAGACAGTCTTCAATAGGAAGCAAATAAAATATTTTTTAATATATGACGGAAAGAGATACGATATGTATGTAGAAATTTTGTATGACAGTAGAGATAGAGTAGAGATAAAAACATGTGAATAGTAACAAGGTTGGGAGAGGAGGCTTGCTATCAAATAGTTTACTAGTAAGAAAAATGATACTTAAAATAAAAGCTCCAAAATTCGACAATGATCATACTTCATAAAAAGGCTCCTCGGCCACACGACACTGTGTCATGTTGAATCGGATATCCCGCATAATGGCATTCTCTGTGTTGGAGATGTCACTGGAAGAGTTGTTCCCTGCTCCAGTCACTAGGGATACATCTGAAAAAAGGTAAAATTTTTAGATAACACAAAAAAGGCGCTCACTTCTTTCACTTTTTTTACAAGTCGAATTTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTRCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATTGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCANNNNNTGC</site>
                <isoschizomers>
                    <enzyme>ApaBI</enzyme>
                    <enzyme>BstAPI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATTGTGCTGGTTTCTCTTCT</pcr_primer_p1>
		<pcr_primer_p2>TAATGTCGTATTACAGGAACACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATTGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTA</canonical_amplicon>
		<polymorphic_amplicon>TTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTRCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATTGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33387</snp_id>
        <super_contig>c008201416.Contig1</super_contig>
        <contig_pos>23822</contig_pos>
        <strand>+</strand>
        <context>GCGCCTCTAT[C/T]GATGCTTGGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTAT</left_flank>
        <right_flank>GATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAAAACATGTGAATAGTAACAAGGTTGGGAGAGGAGGCTTGCTATCAAATAGTTTACTAGTAAGAAAAATGATACTTAAAATAAAAGCTCCAAAATTCGACAATGATCATACTTCATAAAAAGGCTCCTCGGCCACACGACACTGTGTCATGTTGAATCGGATATCCCGCATAATGGCATTCTCTGTGTTGGAGATGTCACTGGAAGAGTTGTTCCCTGCTCCAGTCACTAGGGATACATCTGAAAAAAGGTAAAATTTTTAGATAACACAAAAAAGGCGCTCACTTCTTTCACTTTTTTTACAAGTCGAATTTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATTGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGTAGACACTAATCAGACACACAATTTTGAAAAACTGAGTTTCTGAGTTTTTCGAATTTTTGAAATTCTGAAATTCTGAATTTCCGAAT</canonical>
            <polymorphic>ATAAAAACATGTGAATAGTAACAAGGTTGGGAGAGGAGGCTTGCTATCAAATAGTTTACTAGTAAGAAAAATGATACTTAAAATAAAAGCTCCAAAATTCGACAATGATCATACTTCATAAAAAGGCTCCTCGGCCACACGACACTGTGTCATGTTGAATCGGATATCCCGCATAATGGCATTCTCTGTGTTGGAGATGTCACTGGAAGAGTTGTTCCCTGCTCCAGTCACTAGGGATACATCTGAAAAAAGGTAAAATTTTTAGATAACACAAAAAAGGCGCTCACTTCTTTCACTTTTTTTACAAGTCGAATTTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATYGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGTAGACACTAATCAGACACACAATTTTGAAAAACTGAGTTTCTGAGTTTTTCGAATTTTTGAAATTCTGAAATTCTGAATTTCCGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTGTGCTGGTTTCTCTTCT</pcr_primer_p1>
		<pcr_primer_p2>TAATGTCGTATTACAGGAACACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATTGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTA</canonical_amplicon>
		<polymorphic_amplicon>TTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATYGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33388</snp_id>
        <super_contig>c008201416.Contig1</super_contig>
        <contig_pos>23905</contig_pos>
        <strand>+</strand>
        <context>AGTTGAATAA[C/T]ACTATGAATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAA</left_flank>
        <right_flank>ACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAAGCTCCAAAATTCGACAATGATCATACTTCATAAAAAGGCTCCTCGGCCACACGACACTGTGTCATGTTGAATCGGATATCCCGCATAATGGCATTCTCTGTGTTGGAGATGTCACTGGAAGAGTTGTTCCCTGCTCCAGTCACTAGGGATACATCTGAAAAAAGGTAAAATTTTTAGATAACACAAAAAAGGCGCTCACTTCTTTCACTTTTTTTACAAGTCGAATTTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATTGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGTAGACACTAATCAGACACACAATTTTGAAAAACTGAGTTTCTGAGTTTTTCGAATTTTTGAAATTCTGAAATTCTGAATTTCCGAATTTCTCATTTTGAATTTCTGAAATTTTGCATTTCTCACCTTGACACCAAAACGTAAAAAAAATTAAAATTTGATTTCTGTTTTC</canonical>
            <polymorphic>TAAAAGCTCCAAAATTCGACAATGATCATACTTCATAAAAAGGCTCCTCGGCCACACGACACTGTGTCATGTTGAATCGGATATCCCGCATAATGGCATTCTCTGTGTTGGAGATGTCACTGGAAGAGTTGTTCCCTGCTCCAGTCACTAGGGATACATCTGAAAAAAGGTAAAATTTTTAGATAACACAAAAAAGGCGCTCACTTCTTTCACTTTTTTTACAAGTCGAATTTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATTGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAAYACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGTAGACACTAATCAGACACACAATTTTGAAAAACTGAGTTTCTGAGTTTTTCGAATTTTTGAAATTCTGAAATTCTGAATTTCCGAATTTCTCATTTTGAATTTCTGAAATTTTGCATTTCTCACCTTGACACCAAAACGTAAAAAAAATTAAAATTTGATTTCTGTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCTCATAGTTGGGACAAG</pcr_primer_p1>
		<pcr_primer_p2>ACAAACAATAGCAGCAAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>224</pcr_amplicon_size>
		<canonical_amplicon>GAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGT</canonical_amplicon>
		<polymorphic_amplicon>GAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAAYACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33389</snp_id>
        <super_contig>c008201416.Contig1</super_contig>
        <contig_pos>23961</contig_pos>
        <strand>+</strand>
        <context>CTTCTTCGCA[G/T]CATTYCCATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCA</left_flank>
        <right_flank>CATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGACACTGTGTCATGTTGAATCGGATATCCCGCATAATGGCATTCTCTGTGTTGGAGATGTCACTGGAAGAGTTGTTCCCTGCTCCAGTCACTAGGGATACATCTGAAAAAAGGTAAAATTTTTAGATAACACAAAAAAGGCGCTCACTTCTTTCACTTTTTTTACAAGTCGAATTTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATTGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGTAGACACTAATCAGACACACAATTTTGAAAAACTGAGTTTCTGAGTTTTTCGAATTTTTGAAATTCTGAAATTCTGAATTTCCGAATTTCTCATTTTGAATTTCTGAAATTTTGCATTTCTCACCTTGACACCAAAACGTAAAAAAAATTAAAATTTGATTTCTGTTTTCGATTTTTCCAATTTCCGAAACTTCGTTTCAAATTTTTTGAGAGAATTTGAGATTTC</canonical>
            <polymorphic>CGACACTGTGTCATGTTGAATCGGATATCCCGCATAATGGCATTCTCTGTGTTGGAGATGTCACTGGAAGAGTTGTTCCCTGCTCCAGTCACTAGGGATACATCTGAAAAAAGGTAAAATTTTTAGATAACACAAAAAAGGCGCTCACTTCTTTCACTTTTTTTACAAGTCGAATTTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATTGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAKCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGTAGACACTAATCAGACACACAATTTTGAAAAACTGAGTTTCTGAGTTTTTCGAATTTTTGAAATTCTGAAATTCTGAATTTCCGAATTTCTCATTTTGAATTTCTGAAATTTTGCATTTCTCACCTTGACACCAAAACGTAAAAAAAATTAAAATTTGATTTCTGTTTTCGATTTTTCCAATTTCCGAAACTTCGTTTCAAATTTTTTGAGAGAATTTGAGATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>412 373 127 88</canonical_bands>
                <polymorphic_bands>412 373 215</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>415 370 127 88</canonical_bands>
                <polymorphic_bands>415 370 215</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGACATTACAGTTTGAAAGTTG</pcr_primer_p1>
		<pcr_primer_p2>GTATTTTCCAAATTTCTGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATAC</canonical_amplicon>
		<polymorphic_amplicon>ACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAKCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33390</snp_id>
        <super_contig>c008201416.Contig1</super_contig>
        <contig_pos>23966</contig_pos>
        <strand>+</strand>
        <context>TCGCAKCATT[C/T]CCATTATCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATT</left_flank>
        <right_flank>CCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTGTCATGTTGAATCGGATATCCCGCATAATGGCATTCTCTGTGTTGGAGATGTCACTGGAAGAGTTGTTCCCTGCTCCAGTCACTAGGGATACATCTGAAAAAAGGTAAAATTTTTAGATAACACAAAAAAGGCGCTCACTTCTTTCACTTTTTTTACAAGTCGAATTTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATTGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGTAGACACTAATCAGACACACAATTTTGAAAAACTGAGTTTCTGAGTTTTTCGAATTTTTGAAATTCTGAAATTCTGAATTTCCGAATTTCTCATTTTGAATTTCTGAAATTTTGCATTTCTCACCTTGACACCAAAACGTAAAAAAAATTAAAATTTGATTTCTGTTTTCGATTTTTCCAATTTCCGAAACTTCGTTTCAAATTTTTTGAGAGAATTTGAGATTTCCGTTC</canonical>
            <polymorphic>CTGTGTCATGTTGAATCGGATATCCCGCATAATGGCATTCTCTGTGTTGGAGATGTCACTGGAAGAGTTGTTCCCTGCTCCAGTCACTAGGGATACATCTGAAAAAAGGTAAAATTTTTAGATAACACAAAAAAGGCGCTCACTTCTTTCACTTTTTTTACAAGTCGAATTTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATTGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTYCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGTAGACACTAATCAGACACACAATTTTGAAAAACTGAGTTTCTGAGTTTTTCGAATTTTTGAAATTCTGAAATTCTGAATTTCCGAATTTCTCATTTTGAATTTCTGAAATTTTGCATTTCTCACCTTGACACCAAAACGTAAAAAAAATTAAAATTTGATTTCTGTTTTCGATTTTTCCAATTTCCGAAACTTCGTTTCAAATTTTTTGAGAGAATTTGAGATTTCCGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGACATTACAGTTTGAAAGTTG</pcr_primer_p1>
		<pcr_primer_p2>GTATTTTCCAAATTTCTGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATAC</canonical_amplicon>
		<polymorphic_amplicon>ACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTYCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33391</snp_id>
        <super_contig>c008201416.Contig1</super_contig>
        <contig_pos>23977</contig_pos>
        <strand>+</strand>
        <context>CCATTATCCT[C/T]MAAAGCCTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCT</left_flank>
        <right_flank>CAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAATCGGATATCCCGCATAATGGCATTCTCTGTGTTGGAGATGTCACTGGAAGAGTTGTTCCCTGCTCCAGTCACTAGGGATACATCTGAAAAAAGGTAAAATTTTTAGATAACACAAAAAAGGCGCTCACTTCTTTCACTTTTTTTACAAGTCGAATTTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATTGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGTAGACACTAATCAGACACACAATTTTGAAAAACTGAGTTTCTGAGTTTTTCGAATTTTTGAAATTCTGAAATTCTGAATTTCCGAATTTCTCATTTTGAATTTCTGAAATTTTGCATTTCTCACCTTGACACCAAAACGTAAAAAAAATTAAAATTTGATTTCTGTTTTCGATTTTTCCAATTTCCGAAACTTCGTTTCAAATTTTTTGAGAGAATTTGAGATTTCCGTTCAAGATATCGAA</canonical>
            <polymorphic>TGAATCGGATATCCCGCATAATGGCATTCTCTGTGTTGGAGATGTCACTGGAAGAGTTGTTCCCTGCTCCAGTCACTAGGGATACATCTGAAAAAAGGTAAAATTTTTAGATAACACAAAAAAGGCGCTCACTTCTTTCACTTTTTTTACAAGTCGAATTTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATTGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTYCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGTAGACACTAATCAGACACACAATTTTGAAAAACTGAGTTTCTGAGTTTTTCGAATTTTTGAAATTCTGAAATTCTGAATTTCCGAATTTCTCATTTTGAATTTCTGAAATTTTGCATTTCTCACCTTGACACCAAAACGTAAAAAAAATTAAAATTTGATTTCTGTTTTCGATTTTTCCAATTTCCGAAACTTCGTTTCAAATTTTTTGAGAGAATTTGAGATTTCCGTTCAAGATATCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGACATTACAGTTTGAAAGTTG</pcr_primer_p1>
		<pcr_primer_p2>GTATTTTCCAAATTTCTGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATAC</canonical_amplicon>
		<polymorphic_amplicon>ACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTYCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33392</snp_id>
        <super_contig>c008201416.Contig1</super_contig>
        <contig_pos>23978</contig_pos>
        <strand>+</strand>
        <context>CATTATCCTY[A/C]AAAGCCTCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTC</left_flank>
        <right_flank>AAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATCGGATATCCCGCATAATGGCATTCTCTGTGTTGGAGATGTCACTGGAAGAGTTGTTCCCTGCTCCAGTCACTAGGGATACATCTGAAAAAAGGTAAAATTTTTAGATAACACAAAAAAGGCGCTCACTTCTTTCACTTTTTTTACAAGTCGAATTTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATTGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGTAGACACTAATCAGACACACAATTTTGAAAAACTGAGTTTCTGAGTTTTTCGAATTTTTGAAATTCTGAAATTCTGAATTTCCGAATTTCTCATTTTGAATTTCTGAAATTTTGCATTTCTCACCTTGACACCAAAACGTAAAAAAAATTAAAATTTGATTTCTGTTTTCGATTTTTCCAATTTCCGAAACTTCGTTTCAAATTTTTTGAGAGAATTTGAGATTTCCGTTCAAGATATCGAAA</canonical>
            <polymorphic>GAATCGGATATCCCGCATAATGGCATTCTCTGTGTTGGAGATGTCACTGGAAGAGTTGTTCCCTGCTCCAGTCACTAGGGATACATCTGAAAAAAGGTAAAATTTTTAGATAACACAAAAAAGGCGCTCACTTCTTTCACTTTTTTTACAAGTCGAATTTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATTGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCMAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGTAGACACTAATCAGACACACAATTTTGAAAAACTGAGTTTCTGAGTTTTTCGAATTTTTGAAATTCTGAAATTCTGAATTTCCGAATTTCTCATTTTGAATTTCTGAAATTTTGCATTTCTCACCTTGACACCAAAACGTAAAAAAAATTAAAATTTGATTTCTGTTTTCGATTTTTCCAATTTCCGAAACTTCGTTTCAAATTTTTTGAGAGAATTTGAGATTTCCGTTCAAGATATCGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGACATTACAGTTTGAAAGTTG</pcr_primer_p1>
		<pcr_primer_p2>GTATTTTCCAAATTTCTGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATAC</canonical_amplicon>
		<polymorphic_amplicon>ACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCMAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33393</snp_id>
        <super_contig>c008201416.Contig1</super_contig>
        <contig_pos>24068</contig_pos>
        <strand>+</strand>
        <context>TGTCGTACTT[A/G]GTGAGCGGMA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTT</left_flank>
        <right_flank>GTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAGGTAAAATTTTTAGATAACACAAAAAAGGCGCTCACTTCTTTCACTTTTTTTACAAGTCGAATTTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATTGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGTAGACACTAATCAGACACACAATTTTGAAAAACTGAGTTTCTGAGTTTTTCGAATTTTTGAAATTCTGAAATTCTGAATTTCCGAATTTCTCATTTTGAATTTCTGAAATTTTGCATTTCTCACCTTGACACCAAAACGTAAAAAAAATTAAAATTTGATTTCTGTTTTCGATTTTTCCAATTTCCGAAACTTCGTTTCAAATTTTTTGAGAGAATTTGAGATTTCCGTTCAAGATATCGAAAAATGATTCACTAATAAAATATTTGTTCAAAATTTCAAAGTTTTAAAATTTTTGAATCATTTCAAAAAATTTCAGAATTGTATAATTTCAA</canonical>
            <polymorphic>AAAAAGGTAAAATTTTTAGATAACACAAAAAAGGCGCTCACTTCTTTCACTTTTTTTACAAGTCGAATTTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATTGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTRGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGTAGACACTAATCAGACACACAATTTTGAAAAACTGAGTTTCTGAGTTTTTCGAATTTTTGAAATTCTGAAATTCTGAATTTCCGAATTTCTCATTTTGAATTTCTGAAATTTTGCATTTCTCACCTTGACACCAAAACGTAAAAAAAATTAAAATTTGATTTCTGTTTTCGATTTTTCCAATTTCCGAAACTTCGTTTCAAATTTTTTGAGAGAATTTGAGATTTCCGTTCAAGATATCGAAAAATGATTCACTAATAAAATATTTGTTCAAAATTTCAAAGTTTTAAAATTTTTGAATCATTTCAAAAAATTTCAGAATTGTATAATTTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>366 292 203 101 30 8</canonical_bands>
                <polymorphic_bands>569 292 101 30 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTATGGTCAAAGTGTCTTGAA</pcr_primer_p1>
		<pcr_primer_p2>ACGCATAAATTTCTATGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGT</canonical_amplicon>
		<polymorphic_amplicon>ATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTRGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33394</snp_id>
        <super_contig>c008201416.Contig1</super_contig>
        <contig_pos>24077</contig_pos>
        <strand>+</strand>
        <context>TRGTGAGCGG[A/C]ATGATGAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGG</left_flank>
        <right_flank>ATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTTTAGATAACACAAAAAAGGCGCTCACTTCTTTCACTTTTTTTACAAGTCGAATTTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATTGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGTAGACACTAATCAGACACACAATTTTGAAAAACTGAGTTTCTGAGTTTTTCGAATTTTTGAAATTCTGAAATTCTGAATTTCCGAATTTCTCATTTTGAATTTCTGAAATTTTGCATTTCTCACCTTGACACCAAAACGTAAAAAAAATTAAAATTTGATTTCTGTTTTCGATTTTTCCAATTTCCGAAACTTCGTTTCAAATTTTTTGAGAGAATTTGAGATTTCCGTTCAAGATATCGAAAAATGATTCACTAATAAAATATTTGTTCAAAATTTCAAAGTTTTAAAATTTTTGAATCATTTCAAAAAATTTCAGAATTGTATAATTTCAAAATTTTTAG</canonical>
            <polymorphic>AAATTTTTAGATAACACAAAAAAGGCGCTCACTTCTTTCACTTTTTTTACAAGTCGAATTTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATTGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGMATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGTAGACACTAATCAGACACACAATTTTGAAAAACTGAGTTTCTGAGTTTTTCGAATTTTTGAAATTCTGAAATTCTGAATTTCCGAATTTCTCATTTTGAATTTCTGAAATTTTGCATTTCTCACCTTGACACCAAAACGTAAAAAAAATTAAAATTTGATTTCTGTTTTCGATTTTTCCAATTTCCGAAACTTCGTTTCAAATTTTTTGAGAGAATTTGAGATTTCCGTTCAAGATATCGAAAAATGATTCACTAATAAAATATTTGTTCAAAATTTCAAAGTTTTAAAATTTTTGAATCATTTCAAAAAATTTCAGAATTGTATAATTTCAAAATTTTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTATGGTCAAAGTGTCTTGAA</pcr_primer_p1>
		<pcr_primer_p2>ACGCATAAATTTCTATGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGT</canonical_amplicon>
		<polymorphic_amplicon>ATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGMATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33395</snp_id>
        <super_contig>c008201416.Contig1</super_contig>
        <contig_pos>24133</contig_pos>
        <strand>+</strand>
        <context>GTCTAAATTG[A/G]SATTACATCM</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTG</left_flank>
        <right_flank>CATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATTGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGTAGACACTAATCAGACACACAATTTTGAAAAACTGAGTTTCTGAGTTTTTCGAATTTTTGAAATTCTGAAATTCTGAATTTCCGAATTTCTCATTTTGAATTTCTGAAATTTTGCATTTCTCACCTTGACACCAAAACGTAAAAAAAATTAAAATTTGATTTCTGTTTTCGATTTTTCCAATTTCCGAAACTTCGTTTCAAATTTTTTGAGAGAATTTGAGATTTCCGTTCAAGATATCGAAAAATGATTCACTAATAAAATATTTGTTCAAAATTTCAAAGTTTTAAAATTTTTGAATCATTTCAAAAAATTTCAGAATTGTATAATTTCAAAATTTTTAGATATTCGGAATTTCAGAATTTCAGAATTTCAGAATTTTAGAATTTCAGAATTTTAG</canonical>
            <polymorphic>AATTTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATTGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGRCATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGTAGACACTAATCAGACACACAATTTTGAAAAACTGAGTTTCTGAGTTTTTCGAATTTTTGAAATTCTGAAATTCTGAATTTCCGAATTTCTCATTTTGAATTTCTGAAATTTTGCATTTCTCACCTTGACACCAAAACGTAAAAAAAATTAAAATTTGATTTCTGTTTTCGATTTTTCCAATTTCCGAAACTTCGTTTCAAATTTTTTGAGAGAATTTGAGATTTCCGTTCAAGATATCGAAAAATGATTCACTAATAAAATATTTGTTCAAAATTTCAAAGTTTTAAAATTTTTGAATCATTTCAAAAAATTTCAGAATTGTATAATTTCAAAATTTTTAGATATTCGGAATTTCAGAATTTCAGAATTTCAGAATTTTAGAATTTCAGAATTTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTATGGTCAAAGTGTCTTGAA</pcr_primer_p1>
		<pcr_primer_p2>ACGCATAAATTTCTATGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGT</canonical_amplicon>
		<polymorphic_amplicon>ATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGRCATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33396</snp_id>
        <super_contig>c008201416.Contig1</super_contig>
        <contig_pos>24134</contig_pos>
        <strand>+</strand>
        <context>TCTAAATTGR[C/G]ATTACATCMC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGA</left_flank>
        <right_flank>ATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATTGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGTAGACACTAATCAGACACACAATTTTGAAAAACTGAGTTTCTGAGTTTTTCGAATTTTTGAAATTCTGAAATTCTGAATTTCCGAATTTCTCATTTTGAATTTCTGAAATTTTGCATTTCTCACCTTGACACCAAAACGTAAAAAAAATTAAAATTTGATTTCTGTTTTCGATTTTTCCAATTTCCGAAACTTCGTTTCAAATTTTTTGAGAGAATTTGAGATTTCCGTTCAAGATATCGAAAAATGATTCACTAATAAAATATTTGTTCAAAATTTCAAAGTTTTAAAATTTTTGAATCATTTCAAAAAATTTCAGAATTGTATAATTTCAAAATTTTTAGATATTCGGAATTTCAGAATTTCAGAATTTCAGAATTTTAGAATTTCAGAATTTTAGA</canonical>
            <polymorphic>ATTTATTGTGCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATTGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGASATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGTAGACACTAATCAGACACACAATTTTGAAAAACTGAGTTTCTGAGTTTTTCGAATTTTTGAAATTCTGAAATTCTGAATTTCCGAATTTCTCATTTTGAATTTCTGAAATTTTGCATTTCTCACCTTGACACCAAAACGTAAAAAAAATTAAAATTTGATTTCTGTTTTCGATTTTTCCAATTTCCGAAACTTCGTTTCAAATTTTTTGAGAGAATTTGAGATTTCCGTTCAAGATATCGAAAAATGATTCACTAATAAAATATTTGTTCAAAATTTCAAAGTTTTAAAATTTTTGAATCATTTCAAAAAATTTCAGAATTGTATAATTTCAAAATTTTTAGATATTCGGAATTTCAGAATTTCAGAATTTCAGAATTTTAGAATTTCAGAATTTTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTATGGTCAAAGTGTCTTGAA</pcr_primer_p1>
		<pcr_primer_p2>ACGCATAAATTTCTATGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGT</canonical_amplicon>
		<polymorphic_amplicon>ATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGASATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33397</snp_id>
        <super_contig>c008201416.Contig1</super_contig>
        <contig_pos>24143</contig_pos>
        <strand>+</strand>
        <context>RSATTACATC[A/C]CGARATTAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATC</left_flank>
        <right_flank>CGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATTGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGTAGACACTAATCAGACACACAATTTTGAAAAACTGAGTTTCTGAGTTTTTCGAATTTTTGAAATTCTGAAATTCTGAATTTCCGAATTTCTCATTTTGAATTTCTGAAATTTTGCATTTCTCACCTTGACACCAAAACGTAAAAAAAATTAAAATTTGATTTCTGTTTTCGATTTTTCCAATTTCCGAAACTTCGTTTCAAATTTTTTGAGAGAATTTGAGATTTCCGTTCAAGATATCGAAAAATGATTCACTAATAAAATATTTGTTCAAAATTTCAAAGTTTTAAAATTTTTGAATCATTTCAAAAAATTTCAGAATTGTATAATTTCAAAATTTTTAGATATTCGGAATTTCAGAATTTCAGAATTTCAGAATTTTAGAATTTCAGAATTTTAGAATTCTAGAA</canonical>
            <polymorphic>GCTGGTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATTGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCMCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGTAGACACTAATCAGACACACAATTTTGAAAAACTGAGTTTCTGAGTTTTTCGAATTTTTGAAATTCTGAAATTCTGAATTTCCGAATTTCTCATTTTGAATTTCTGAAATTTTGCATTTCTCACCTTGACACCAAAACGTAAAAAAAATTAAAATTTGATTTCTGTTTTCGATTTTTCCAATTTCCGAAACTTCGTTTCAAATTTTTTGAGAGAATTTGAGATTTCCGTTCAAGATATCGAAAAATGATTCACTAATAAAATATTTGTTCAAAATTTCAAAGTTTTAAAATTTTTGAATCATTTCAAAAAATTTCAGAATTGTATAATTTCAAAATTTTTAGATATTCGGAATTTCAGAATTTCAGAATTTCAGAATTTTAGAATTTCAGAATTTTAGAATTCTAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTATGGTCAAAGTGTCTTGAA</pcr_primer_p1>
		<pcr_primer_p2>ACGCATAAATTTCTATGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGT</canonical_amplicon>
		<polymorphic_amplicon>ATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCMCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33398</snp_id>
        <super_contig>c008201416.Contig1</super_contig>
        <contig_pos>24147</contig_pos>
        <strand>+</strand>
        <context>TACATCMCGA[A/G]ATTAAAAATG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGA</left_flank>
        <right_flank>ATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATTGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGTAGACACTAATCAGACACACAATTTTGAAAAACTGAGTTTCTGAGTTTTTCGAATTTTTGAAATTCTGAAATTCTGAATTTCCGAATTTCTCATTTTGAATTTCTGAAATTTTGCATTTCTCACCTTGACACCAAAACGTAAAAAAAATTAAAATTTGATTTCTGTTTTCGATTTTTCCAATTTCCGAAACTTCGTTTCAAATTTTTTGAGAGAATTTGAGATTTCCGTTCAAGATATCGAAAAATGATTCACTAATAAAATATTTGTTCAAAATTTCAAAGTTTTAAAATTTTTGAATCATTTCAAAAAATTTCAGAATTGTATAATTTCAAAATTTTTAGATATTCGGAATTTCAGAATTTCAGAATTTCAGAATTTTAGAATTTCAGAATTTTAGAATTCTAGAATTTT</canonical>
            <polymorphic>GTTTCTCTTCTGGTTGAATGCCTGAGCTTCTTTTAGAAGATCCTTCCCAAGCTCAGCAGTTGTTGCCTTGTCGAAGAATCCTGTCAGCTTTTTCTAAAAATGAATTGTATTTGTTTGATATTCAAATTGAAGTGCTACCTGGATCGCCTGCATCTTCTCTTCATGCGCCTCTATTGATGCTTGGCTGCGGAGCTCATAGTTGGGACAAGCGCTTTTGTGTTCCTGTAATACGACATTACAGTTTGAAAGTTGAATAATACTATGAATGCTTACTCTCACAACACATCCAAAGTTCTCGCACACCTTCTTCGCAGCATTTCCATTATCCTCCAAAGCCTCATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGARATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGTAGACACTAATCAGACACACAATTTTGAAAAACTGAGTTTCTGAGTTTTTCGAATTTTTGAAATTCTGAAATTCTGAATTTCCGAATTTCTCATTTTGAATTTCTGAAATTTTGCATTTCTCACCTTGACACCAAAACGTAAAAAAAATTAAAATTTGATTTCTGTTTTCGATTTTTCCAATTTCCGAAACTTCGTTTCAAATTTTTTGAGAGAATTTGAGATTTCCGTTCAAGATATCGAAAAATGATTCACTAATAAAATATTTGTTCAAAATTTCAAAGTTTTAAAATTTTTGAATCATTTCAAAAAATTTCAGAATTGTATAATTTCAAAATTTTTAGATATTCGGAATTTCAGAATTTCAGAATTTCAGAATTTTAGAATTTCAGAATTTTAGAATTCTAGAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTATGGTCAAAGTGTCTTGAA</pcr_primer_p1>
		<pcr_primer_p2>ACGCATAAATTTCTATGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGAGATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGT</canonical_amplicon>
		<polymorphic_amplicon>ATTTATGGTCAAAGTGTCTTGAATACCACTGGCTTTCTTCACAGCTCCAACCTTTCTTTGCTGCTATTGTTTGTCGTACTTAGTGAGCGGAATGATGAACAAGAGATTCTAAAAAAGCAGAAATTTGGAAAATACTGTCTAAATTGACATTACATCCCGARATTAAAAATGCAATGAAAACAATTTATATTTGGAAGACTTTCTACAAAATTCAAAAAAAAGTTTTTGAAAAACATAGAAATTTATGCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33399</snp_id>
        <super_contig>c008201452.Contig1</super_contig>
        <contig_pos>1539</contig_pos>
        <strand></strand>
        <context>TGTGCTcttt[G/A]agcccaatta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTTTTTAGAAAAAAAAGTGTATTGTTTCACAACACTATATGTGCTCTTT</left_flank>
        <right_flank>AGCCCAATTATCTCGGTTCCTATGAGAGATATCAAAAATCTGTCAACTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGAAGTCCGTTAGGCACTTGTTTTTCATTTTGTAGCAATAGTCATCTGAAACTTTTTTTTTCGAATTTTTCAAATTCCCGCCAGGTTCTCTTACCATCAGTACAGTAAGTTTTCGGCATGTACTCCAGAAAAATGGCAAAAAGCATTTGAACGGAAAAGAAGAGGGTCATTTGGTAGAGGACCATCAGGCCGAGGTCCAGGCGCCATGTTCCTTTGAAGATTACTGTAGTTCATTTGTTTTAGTGATAATGTAGTACCTGTGATACATCCCATTATTCTTAATGGGAACTCTTTGAACCAGAGAATAAAATTATGATGTTTTAAAGGGATAGGGGTGATAAGGTGTGATAACTGATGAAAAAAGAAGGTTTTTAATAGGTTTCGTGGATTTCGTAGAACGTTTAGCATAATTTTTTCTAGATCGTGGAATATAAAAAAAGGCTGAAAATTTTTTAGAAAAAAAAGTGTATTGTTTCACAACACTATATGTGCTCTTTGAGCCCAATTATCTCGGTTCCTATGAGAGATATCAAAAATCTGTCAACTGAAAAAATGTTTATCATATTATCACCAATGTTTTATCAGTTGCCAAAATTTTGATATCTCTTATAGGAACCGAGATAATTGAGCTCAAAAAATACAATTAAAAAACAGAACAATTAAAACATTTATCCCAAGGAAAAAGTTGGTAAAATCATTTGTCCTGCTTTTTTCAGTGCATTACTTCCCACTTTTGAAAGTGCTGCTTTGCCGAAAGTGTCCGCAAATTTTCCGAATTTTTTCGAAAATTTCTTGATTCCTCGTTTCTCGCGAAGATTGGCTAGTTTTGTTGGCTGAAATAGTGGTTACAGTAATTTAAGCTCAATTATCTCGGTTCCATCAAGAGATATCAAAAATCTGATAACTGATTAAATGTTGGTGATAAACTGATAAACATTTTTTCAGTTAACAAAGTTTTGATATCTCTATTAGAAATTGAGATAATCAAGGTTGAAGTG</canonical>
            <polymorphic>AATGAAGTCCGTTAGGCACTTGTTTTTCATTTTGTAGCAATAGTCATCTGAAACTTTTTTTTTCGAATTTTTCAAATTCCCGCCAGGTTCTCTTACCATCAGTACAGTAAGTTTTCGGCATGTACTCCAGAAAAATGGCAAAAAGCATTTGAACGGAAAAGAAGAGGGTCATTTGGTAGAGGACCATCAGGCCGAGGTCCAGGCGCCATGTTCCTTTGAAGATTACTGTAGTTCATTTGTTTTAGTGATAATGTAGTACCTGTGATACATCCCATTATTCTTAATGGGAACTCTTTGAACCAGAGAATAAAATTATGATGTTTTAAAGGGATAGGGGTGATAAGGTGTGATAACTGATGAAAAAAGAAGGTTTTTAATAGGTTTCGTGGATTTCGTAGAACGTTTAGCATAATTTTTTCTAGATCGTGGAATATAAAAAAAGGCTGAAAATTTTTTAGAAAAAAAAGTGTATTGTTTCACAACACTATATGTGCTCTTTRAGCCCAATTATCTCGGTTCCTATGAGAGATATCAAAAATCTGTCAACTGAAAAAATGTTTATCATATTATCACCAATGTTTTATCAGTTGCCAAAATTTTGATATCTCTTATAGGAACCGAGATAATTGAGCTCAAAAAATACAATTAAAAAACAGAACAATTAAAACATTTATCCCAAGGAAAAAGTTGGTAAAATCATTTGTCCTGCTTTTTTCAGTGCATTACTTCCCACTTTTGAAAGTGCTGCTTTGCCGAAAGTGTCCGCAAATTTTCCGAATTTTTTCGAAAATTTCTTGATTCCTCGTTTCTCGCGAAGATTGGCTAGTTTTGTTGGCTGAAATAGTGGTTACAGTAATTTAAGCTCAATTATCTCGGTTCCATCAAGAGATATCAAAAATCTGATAACTGATTAAATGTTGGTGATAAACTGATAAACATTTTTTCAGTTAACAAAGTTTTGATATCTCTATTAGAAATTGAGATAATCAAGGTTGAAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>504 367 129</canonical_bands>
                <polymorphic_bands>633 367</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>495 367 129 9</canonical_bands>
                <polymorphic_bands>495 367 138</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTAGATCGTGGAATATAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTGGGATAAATGTTTTAATTGT</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTAGATCGTGGAATATAAAAAAAGGCTGAAAATTTTTTAGAAAAAAAAGTGTATTGTTTCACAACACTATATGTGCTCTTTGAGCCCAATTATCTCGGTTCCTATGAGAGATATCAAAAATCTGTCAACTGAAAAAATGTTTATCATATTATCACCAATGTTTTATCAGTTGCCAAAATTTTGATATCTCTTATAGGAACCGAGATAATTGAGCTCAAAAAATACAATTAAAAAACAGAACAATTAAAACATTTATCCCAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTAGATCGTGGAATATAAAAAAAGGCTGAAAATTTTTTAGAAAAAAAAGTGTATTGTTTCACAACACTATATGTGCTCTTTRAGCCCAATTATCTCGGTTCCTATGAGAGATATCAAAAATCTGTCAACTGAAAAAATGTTTATCATATTATCACCAATGTTTTATCAGTTGCCAAAATTTTGATATCTCTTATAGGAACCGAGATAATTGAGCTCAAAAAATACAATTAAAAAACAGAACAATTAAAACATTTATCCCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33400</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>39831</contig_pos>
        <strand></strand>
        <context>tcaattatct[T/C]ggttcctatg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATGCCGCTCTAGGAAATACATTTATATTTTCACTTTGAGCTCAATTATCT</left_flank>
        <right_flank>GGTTCCTATGAGGGCGATCAAAAACATGTAAACTGATAAAATGTTACTGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCAGGATGCAGCTGAATTAGGGTTTTAAGGAAAACTGGGTCAAATCAAATTCTCAGAAATTTCAAAAATTTGGAAAAACAAGTTACCTTGTGTTTACACCAACCCATCTGAGATTTTGTCTCATATTCACACGTCGGGACCCTCAAAAGTTTACCATCATGAGCACTCCAATCAATATTCAGTCGAGCTGCGTCGTCTGGAATATTTTTTGAACTAATTTTTCTCGTTTCCAGTGATAGATAGAAAAAAGTTGTCAACTGATGTAATGTTTATCATTATATCAGTAATATTTTATTAGTTGACAACATTTTGATATCTCTCATAGGAACCGAGATGAAATTAACGTCACTGTTGGTTTACTGTAACTGTCGACCATGTTTAGCCACTTTTGTTTTTTTGTGTTTCAATGAAAATGTAAAATTGCAGTTATCCCAAAAATTTGTTAGTGATGCCGCTCTAGGAAATACATTTATATTTTCACTTTGAGCTCAATTATCTTGGTTCCTATGAGGGCGATCAAAAACATGTAAACTGATAAAATGTTACTGAAATTATGATAAACACTTTATTAGTTGACCACACTTTATTAGTTGATATCTCTCACAGGAACTGAGATAATGGAGATCAAAGTACAGCTTTAGCCGTTACAATTATTTGCAGTTCGAGCTGATATGACAAAAAAGTTGTCAATTGACCGTTTTTTGATATCTCTTACCGGAACCAAGATAATTAACAAGCTCAAAAATTACCAAGTGTCATATTCTCTGTAACACTATCCAATCTTCCAAAACTTCTTCGTTCACTTCCATCCAGAATATCCATGATTTCATCTTTGTTGATAACTACTGCATTCAAAAAGAAAAGTATAACAATCATAATTCCAATATGTGAATTCGACAGTTTCAAATACCACTTTTCAAATGTCTCAAACAAAAAAACGGCCAAGATTAAAGATGCTAGAAGGGCACCAAACAGTTCTGAAATTTTTTTTTTCTTAAT</canonical>
            <polymorphic>GTCAGGATGCAGCTGAATTAGGGTTTTAAGGAAAACTGGGTCAAATCAAATTCTCAGAAATTTCAAAAATTTGGAAAAACAAGTTACCTTGTGTTTACACCAACCCATCTGAGATTTTGTCTCATATTCACACGTCGGGACCCTCAAAAGTTTACCATCATGAGCACTCCAATCAATATTCAGTCGAGCTGCGTCGTCTGGAATATTTTTTGAACTAATTTTTCTCGTTTCCAGTGATAGATAGAAAAAAGTTGTCAACTGATGTAATGTTTATCATTATATCAGTAATATTTTATTAGTTGACAACATTTTGATATCTCTCATAGGAACCGAGATGAAATTAACGTCACTGTTGGTTTACTGTAACTGTCGACCATGTTTAGCCACTTTTGTTTTTTTGTGTTTCAATGAAAATGTAAAATTGCAGTTATCCCAAAAATTTGTTAGTGATGCCGCTCTAGGAAATACATTTATATTTTCACTTTGAGCTCAATTATCTYGGTTCCTATGAGGGCGATCAAAAACATGTAAACTGATAAAATGTTACTGAAATTATGATAAACACTTTATTAGTTGACCACACTTTATTAGTTGATATCTCTCACAGGAACTGAGATAATGGAGATCAAAGTACAGCTTTAGCCGTTACAATTATTTGCAGTTCGAGCTGATATGACAAAAAAGTTGTCAATTGACCGTTTTTTGATATCTCTTACCGGAACCAAGATAATTAACAAGCTCAAAAATTACCAAGTGTCATATTCTCTGTAACACTATCCAATCTTCCAAAACTTCTTCGTTCACTTCCATCCAGAATATCCATGATTTCATCTTTGTTGATAACTACTGCATTCAAAAAGAAAAGTATAACAATCATAATTCCAATATGTGAATTCGACAGTTTCAAATACCACTTTTCAAATGTCTCAAACAAAAAAACGGCCAAGATTAAAGATGCTAGAAGGGCACCAAACAGTTCTGAAATTTTTTTTTTCTTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGCAGTTATCCCAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTCGAACTGCAAATAATTGTAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATTGCAGTTATCCCAAAAATTTGTTAGTGATGCCGCTCTAGGAAATACATTTATATTTTCACTTTGAGCTCAATTATCTTGGTTCCTATGAGGGCGATCAAAAACATGTAAACTGATAAAATGTTACTGAAATTATGATAAACACTTTATTAGTTGACCACACTTTATTAGTTGATATCTCTCACAGGAACTGAGATAATGGAGATCAAAGTACAGCTTTAGCCGTTACAATTATTTGCAGTTCGAG</canonical_amplicon>
		<polymorphic_amplicon>AATTGCAGTTATCCCAAAAATTTGTTAGTGATGCCGCTCTAGGAAATACATTTATATTTTCACTTTGAGCTCAATTATCTYGGTTCCTATGAGGGCGATCAAAAACATGTAAACTGATAAAATGTTACTGAAATTATGATAAACACTTTATTAGTTGACCACACTTTATTAGTTGATATCTCTCACAGGAACTGAGATAATGGAGATCAAAGTACAGCTTTAGCCGTTACAATTATTTGCAGTTCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33401</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>41476</contig_pos>
        <strand></strand>
        <context>aattgaacgg[G/T]ccgggtggcg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTTGATATCTTTCAAAAAAAGTGAGATATGTAGGATCAAATTGAACGG</left_flank>
        <right_flank>CCGGGTGGCGTTCTATTAGAGTGTTTGCGGTAATTATAGTAAGGTTTAAA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTATTCACTATTCGCAAGCATACTGATGCAAAGAATATAATGACTGTTTCAAGAAGGAATTGAAAAATTCAAGGCTTCCAATTTTTTATTGTGTTCGCGGAAGTGAACCGATATATTTTCTGGAATATTTCAATAATGGGGTTTCGAGATTTCCAAAAGCTAATGTTAGTTTTTCTTGGGTGTAAATTTTTTTTGTGTTTCAAAAAATCTATCCTTGACAACATTGGGAATTTAGACATTGGACCTTGGATACATTTGTCTTGTTTTTAAATGATGTGACTAATCTCTGGAAATTCGGAGTTGTTGAAACAAAATACTGTAAACACTCTAATAAAACGAATCGTCAAATTTGAGCCCATGTACCCCATTTTCTGGGAGAGATATCAAAAACTGGTTAACTAATAAAATGTTGATGATATCATGATAAACATTTTATTAGTTGACAACTTTTTGATATCTTTCAAAAAAAGTGAGATATGTAGGATCAAATTGAACGGGCCGGGTGGCGTTCTATTAGAGTGTTTGCGGTAATTATAGTAAGGTTTAAAGACATAAAATAGTTTTTACACATTTTTCAAGCATTTTTAAAATTATTTTTCCTCAAAGTTGGACTTTCGAAATTGCAATTTAAAATGTCAAATTTTCAATTCTTTTCTGTTTCAACTAAATTTGAGTAAACAATAAATATACCACTGATAATTTTCGAATTCAAAAAAAAACTTTTTAGGAAAATTACCATTTCAAACAGTTTTTTTTAAATGTCACTCTTTTTGAAATGAGTTCGGGATATGCATCATTATACTCTCTTTACTACTCTTTTCTACTAAATTTTCTCGGTAGAATCATATTTTACGGTAATTGTAGTTAACGGAGGGTGGTTAGGAGAGTGGTCTGGAAATATATTTACCGTTTCGGGGGAAAATTATGACTTTAAAGATTCAAAAGTTTTTTGATTGGTGATATTTAACACAAAACACCGCACACTGTACACCGACATT</canonical>
            <polymorphic>AATTATTCACTATTCGCAAGCATACTGATGCAAAGAATATAATGACTGTTTCAAGAAGGAATTGAAAAATTCAAGGCTTCCAATTTTTTATTGTGTTCGCGGAAGTGAACCGATATATTTTCTGGAATATTTCAATAATGGGGTTTCGAGATTTCCAAAAGCTAATGTTAGTTTTTCTTGGGTGTAAATTTTTTTTGTGTTTCAAAAAATCTATCCTTGACAACATTGGGAATTTAGACATTGGACCTTGGATACATTTGTCTTGTTTTTAAATGATGTGACTAATCTCTGGAAATTCGGAGTTGTTGAAACAAAATACTGTAAACACTCTAATAAAACGAATCGTCAAATTTGAGCCCATGTACCCCATTTTCTGGGAGAGATATCAAAAACTGGTTAACTAATAAAATGTTGATGATATCATGATAAACATTTTATTAGTTGACAACTTTTTGATATCTTTCAAAAAAAGTGAGATATGTAGGATCAAATTGAACGGKCCGGGTGGCGTTCTATTAGAGTGTTTGCGGTAATTATAGTAAGGTTTAAAGACATAAAATAGTTTTTACACATTTTTCAAGCATTTTTAAAATTATTTTTCCTCAAAGTTGGACTTTCGAAATTGCAATTTAAAATGTCAAATTTTCAATTCTTTTCTGTTTCAACTAAATTTGAGTAAACAATAAATATACCACTGATAATTTTCGAATTCAAAAAAAAACTTTTTAGGAAAATTACCATTTCAAACAGTTTTTTTTAAATGTCACTCTTTTTGAAATGAGTTCGGGATATGCATCATTATACTCTCTTTACTACTCTTTTCTACTAAATTTTCTCGGTAGAATCATATTTTACGGTAATTGTAGTTAACGGAGGGTGGTTAGGAGAGTGGTCTGGAAATATATTTACCGTTTCGGGGGAAAATTATGACTTTAAAGATTCAAAAGTTTTTTGATTGGTGATATTTAACACAAAACACCGCACACTGTACACCGACATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>500 195 144 85 76</canonical_bands>
                <polymorphic_bands>644 195 85 76</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATTCGGAGTTGTTGAAA</pcr_primer_p1>
		<pcr_primer_p2>ATGCTTGAAAAATGTGTAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>293</pcr_amplicon_size>
		<canonical_amplicon>GAAATTCGGAGTTGTTGAAACAAAATACTGTAAACACTCTAATAAAACGAATCGTCAAATTTGAGCCCATGTACCCCATTTTCTGGGAGAGATATCAAAAACTGGTTAACTAATAAAATGTTGATGATATCATGATAAACATTTTATTAGTTGACAACTTTTTGATATCTTTCAAAAAAAGTGAGATATGTAGGATCAAATTGAACGGGCCGGGTGGCGTTCTATTAGAGTGTTTGCGGTAATTATAGTAAGGTTTAAAGACATAAAATAGTTTTTACACATTTTTCAAGCAT</canonical_amplicon>
		<polymorphic_amplicon>GAAATTCGGAGTTGTTGAAACAAAATACTGTAAACACTCTAATAAAACGAATCGTCAAATTTGAGCCCATGTACCCCATTTTCTGGGAGAGATATCAAAAACTGGTTAACTAATAAAATGTTGATGATATCATGATAAACATTTTATTAGTTGACAACTTTTTGATATCTTTCAAAAAAAGTGAGATATGTAGGATCAAATTGAACGGKCCGGGTGGCGTTCTATTAGAGTGTTTGCGGTAATTATAGTAAGGTTTAAAGACATAAAATAGTTTTTACACATTTTTCAAGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33402</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>42971</contig_pos>
        <strand>+</strand>
        <context>TTGTAGCTAG[A/G]GTATGCATTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTTAAAGGTGGGGAGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAG</left_flank>
        <right_flank>GTATGCATTCTATCGTGACGGTGTACAACGCCTAATGTCACTCTGCGTAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCCGGCAAAGGCCCGAACAACAATTATGGTTTCAATAAAGTTGGATCAACTTGAACATAGCAATTATGGTAATCTGCTGTTCATTAAGCGATGATAACAGTAACTTTCAACTTTGAGCCAATTTATCTCGGTTCCTTCCAAAGATATTGAAAAGTTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTAATAGTTGACTACTTTTTGCTATCTTCCACAGGAACCGAGATAAATTAACTCAAAGTTTAATCGAAAAGTTAGAAAACTTTTCAGAAATTTTTTTTACTGTTTCAAATGTCGGTCATAATTTCTCAAAAATTGATTCATTATTAACAATTAGTCCAATGCAAAGAAGGAAAAAAGATAAAAACAATCGATTCCTGCTAAAAAGTGCTGACTTTCCGCCAAATCTTAAAATTCTAGGGCATCATCAGAAATGTTTTAAAGGTGGGGAGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGGGTATGCATTCTATCGTGACGGTGTACAACGCCTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTTGCGGCGCCGCACCCTCAATCATCGTCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCCGCCTTTAATTATTGAAAAAAATGTGGAATTTTTTTTCAATTTTCAAATGTATTTTTTTGTAAATTTCAAAAATTGGGGCTTCTAACTCTAAAATTACCGTTTCAATTGAAAGTTTTGGAAATTCGAGTCTTCAGTTTTCTTGATGTTTCGGCCCCTCTTGAAATATTTATTTTCTCAAAATTTCAATGGGTTGGGGGATTTGAGGATTTTAAGACACATTATCTGAGAGAATTGAGATCGGGTCAACAAAACTTTTTAAAAAAGCTGAAGTTCGTTTTTT</canonical>
            <polymorphic>AGCCCGGCAAAGGCCCGAACAACAATTATGGTTTCAATAAAGTTGGATCAACTTGAACATAGCAATTATGGTAATCTGCTGTTCATTAAGCGATGATAACAGTAACTTTCAACTTTGAGCCAATTTATCTCGGTTCCTTCCAAAGATATTGAAAAGTTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTAATAGTTGACTACTTTTTGCTATCTTCCACAGGAACCGAGATAAATTAACTCAAAGTTTAATCGAAAAGTTAGAAAACTTTTCAGAAATTTTTTTTACTGTTTCAAATGTCGGTCATAATTTCTCAAAAATTGATTCATTATTAACAATTAGTCCAATGCAAAGAAGGAAAAAAGATAAAAACAATCGATTCCTGCTAAAAAGTGCTGACTTTCCGCCAAATCTTAAAATTCTAGGGCATCATCAGAAATGTTTTAAAGGTGGGGAGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGRGTATGCATTCTATCGTGACGGTGTACAACGCCTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTTGCGGCGCCGCACCCTCAATCATCGTCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCCGCCTTTAATTATTGAAAAAAATGTGGAATTTTTTTTCAATTTTCAAATGTATTTTTTTGTAAATTTCAAAAATTGGGGCTTCTAACTCTAAAATTACCGTTTCAATTGAAAGTTTTGGAAATTCGAGTCTTCAGTTTTCTTGATGTTTCGGCCCCTCTTGAAATATTTATTTTCTCAAAATTTCAATGGGTTGGGGGATTTGAGGATTTTAAGACACATTATCTGAGAGAATTGAGATCGGGTCAACAAAACTTTTTAAAAAAGCTGAAGTTCGTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTCGGTCATAATTTCTCAA</pcr_primer_p1>
		<pcr_primer_p2>AGCTGTACGCAGAGTGACAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATGTCGGTCATAATTTCTCAAAAATTGATTCATTATTAACAATTAGTCCAATGCAAAGAAGGAAAAAAGATAAAAACAATCGATTCCTGCTAAAAAGTGCTGACTTTCCGCCAAATCTTAAAATTCTAGGGCATCATCAGAAATGTTTTAAAGGTGGGGAGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGGGTATGCATTCTATCGTGACGGTGTACAACGCCTAATGTCACTCTGCGTACAGCT</canonical_amplicon>
		<polymorphic_amplicon>AATGTCGGTCATAATTTCTCAAAAATTGATTCATTATTAACAATTAGTCCAATGCAAAGAAGGAAAAAAGATAAAAACAATCGATTCCTGCTAAAAAGTGCTGACTTTCCGCCAAATCTTAAAATTCTAGGGCATCATCAGAAATGTTTTAAAGGTGGGGAGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGRGTATGCATTCTATCGTGACGGTGTACAACGCCTAATGTCACTCTGCGTACAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33403</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>42984</contig_pos>
        <strand></strand>
        <context>ATGCATTCTA[T/C]CGTRACGGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGAGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGGGTATGCATTCTA</left_flank>
        <right_flank>CGTGACGGTGTACAACGCCTAATGTCACTCTGCGTACAGCTGTCGTCCTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCGAACAACAATTATGGTTTCAATAAAGTTGGATCAACTTGAACATAGCAATTATGGTAATCTGCTGTTCATTAAGCGATGATAACAGTAACTTTCAACTTTGAGCCAATTTATCTCGGTTCCTTCCAAAGATATTGAAAAGTTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTAATAGTTGACTACTTTTTGCTATCTTCCACAGGAACCGAGATAAATTAACTCAAAGTTTAATCGAAAAGTTAGAAAACTTTTCAGAAATTTTTTTTACTGTTTCAAATGTCGGTCATAATTTCTCAAAAATTGATTCATTATTAACAATTAGTCCAATGCAAAGAAGGAAAAAAGATAAAAACAATCGATTCCTGCTAAAAAGTGCTGACTTTCCGCCAAATCTTAAAATTCTAGGGCATCATCAGAAATGTTTTAAAGGTGGGGAGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGGGTATGCATTCTATCGTGACGGTGTACAACGCCTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTTGCGGCGCCGCACCCTCAATCATCGTCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCCGCCTTTAATTATTGAAAAAAATGTGGAATTTTTTTTCAATTTTCAAATGTATTTTTTTGTAAATTTCAAAAATTGGGGCTTCTAACTCTAAAATTACCGTTTCAATTGAAAGTTTTGGAAATTCGAGTCTTCAGTTTTCTTGATGTTTCGGCCCCTCTTGAAATATTTATTTTCTCAAAATTTCAATGGGTTGGGGGATTTGAGGATTTTAAGACACATTATCTGAGAGAATTGAGATCGGGTCAACAAAACTTTTTAAAAAAGCTGAAGTTCGTTTTTTTTTTGGGAGTTTC</canonical>
            <polymorphic>CCCGAACAACAATTATGGTTTCAATAAAGTTGGATCAACTTGAACATAGCAATTATGGTAATCTGCTGTTCATTAAGCGATGATAACAGTAACTTTCAACTTTGAGCCAATTTATCTCGGTTCCTTCCAAAGATATTGAAAAGTTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTAATAGTTGACTACTTTTTGCTATCTTCCACAGGAACCGAGATAAATTAACTCAAAGTTTAATCGAAAAGTTAGAAAACTTTTCAGAAATTTTTTTTACTGTTTCAAATGTCGGTCATAATTTCTCAAAAATTGATTCATTATTAACAATTAGTCCAATGCAAAGAAGGAAAAAAGATAAAAACAATCGATTCCTGCTAAAAAGTGCTGACTTTCCGCCAAATCTTAAAATTCTAGGGCATCATCAGAAATGTTTTAAAGGTGGGGAGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGGGTATGCATTCTAYCGTGACGGTGTACAACGCCTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTTGCGGCGCCGCACCCTCAATCATCGTCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCCGCCTTTAATTATTGAAAAAAATGTGGAATTTTTTTTCAATTTTCAAATGTATTTTTTTGTAAATTTCAAAAATTGGGGCTTCTAACTCTAAAATTACCGTTTCAATTGAAAGTTTTGGAAATTCGAGTCTTCAGTTTTCTTGATGTTTCGGCCCCTCTTGAAATATTTATTTTCTCAAAATTTCAATGGGTTGGGGGATTTGAGGATTTTAAGACACATTATCTGAGAGAATTGAGATCGGGTCAACAAAACTTTTTAAAAAAGCTGAAGTTCGTTTTTTTTTTGGGAGTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>501 177 168 136 18</canonical_bands>
                <polymorphic_bands>678 168 136 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAGACAGGAGATTTTTCGTA</pcr_primer_p1>
		<pcr_primer_p2>AGTTAGAAGCCCCAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>345</pcr_amplicon_size>
		<canonical_amplicon>GGAGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGGGTATGCATTCTATCGTGACGGTGTACAACGCCTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTTGCGGCGCCGCACCCTCAATCATCGTCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCCGCCTTTAATTATTGAAAAAAATGTGGAATTTTTTTTCAATTTTCAAATGTATTTTTTTGTAAATTTCAAAAATTGGGGCTTCTAACT</canonical_amplicon>
		<polymorphic_amplicon>GGAGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGGGTATGCATTCTAYCGTGACGGTGTACAACGCCTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTTGCGGCGCCGCACCCTCAATCATCGTCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCCGCCTTTAATTATTGAAAAAAATGTGGAATTTTTTTTCAATTTTCAAATGTATTTTTTTGTAAATTTCAAAAATTGGGGCTTCTAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33404</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>42988</contig_pos>
        <strand></strand>
        <context>ATTCTAYCGT[G/A]ACGGTGTACA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGGGTATGCATTCTATCGT</left_flank>
        <right_flank>ACGGTGTACAACGCCTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAACAATTATGGTTTCAATAAAGTTGGATCAACTTGAACATAGCAATTATGGTAATCTGCTGTTCATTAAGCGATGATAACAGTAACTTTCAACTTTGAGCCAATTTATCTCGGTTCCTTCCAAAGATATTGAAAAGTTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTAATAGTTGACTACTTTTTGCTATCTTCCACAGGAACCGAGATAAATTAACTCAAAGTTTAATCGAAAAGTTAGAAAACTTTTCAGAAATTTTTTTTACTGTTTCAAATGTCGGTCATAATTTCTCAAAAATTGATTCATTATTAACAATTAGTCCAATGCAAAGAAGGAAAAAAGATAAAAACAATCGATTCCTGCTAAAAAGTGCTGACTTTCCGCCAAATCTTAAAATTCTAGGGCATCATCAGAAATGTTTTAAAGGTGGGGAGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGGGTATGCATTCTATCGTGACGGTGTACAACGCCTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTTGCGGCGCCGCACCCTCAATCATCGTCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCCGCCTTTAATTATTGAAAAAAATGTGGAATTTTTTTTCAATTTTCAAATGTATTTTTTTGTAAATTTCAAAAATTGGGGCTTCTAACTCTAAAATTACCGTTTCAATTGAAAGTTTTGGAAATTCGAGTCTTCAGTTTTCTTGATGTTTCGGCCCCTCTTGAAATATTTATTTTCTCAAAATTTCAATGGGTTGGGGGATTTGAGGATTTTAAGACACATTATCTGAGAGAATTGAGATCGGGTCAACAAAACTTTTTAAAAAAGCTGAAGTTCGTTTTTTTTTTGGGAGTTTCAATA</canonical>
            <polymorphic>AACAACAATTATGGTTTCAATAAAGTTGGATCAACTTGAACATAGCAATTATGGTAATCTGCTGTTCATTAAGCGATGATAACAGTAACTTTCAACTTTGAGCCAATTTATCTCGGTTCCTTCCAAAGATATTGAAAAGTTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTAATAGTTGACTACTTTTTGCTATCTTCCACAGGAACCGAGATAAATTAACTCAAAGTTTAATCGAAAAGTTAGAAAACTTTTCAGAAATTTTTTTTACTGTTTCAAATGTCGGTCATAATTTCTCAAAAATTGATTCATTATTAACAATTAGTCCAATGCAAAGAAGGAAAAAAGATAAAAACAATCGATTCCTGCTAAAAAGTGCTGACTTTCCGCCAAATCTTAAAATTCTAGGGCATCATCAGAAATGTTTTAAAGGTGGGGAGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGGGTATGCATTCTATCGTRACGGTGTACAACGCCTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTTGCGGCGCCGCACCCTCAATCATCGTCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCCGCCTTTAATTATTGAAAAAAATGTGGAATTTTTTTTCAATTTTCAAATGTATTTTTTTGTAAATTTCAAAAATTGGGGCTTCTAACTCTAAAATTACCGTTTCAATTGAAAGTTTTGGAAATTCGAGTCTTCAGTTTTCTTGATGTTTCGGCCCCTCTTGAAATATTTATTTTCTCAAAATTTCAATGGGTTGGGGGATTTGAGGATTTTAAGACACATTATCTGAGAGAATTGAGATCGGGTCAACAAAACTTTTTAAAAAAGCTGAAGTTCGTTTTTTTTTTGGGAGTTTCAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>211 191 176 94 81 69 57 56 23 19 17 6</canonical_bands>
                <polymorphic_bands>211 191 176 94 81 69 62 57 23 19 17</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>497 177 168 140 18</canonical_bands>
                <polymorphic_bands>674 168 140 18</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>497 481 22</canonical_bands>
                <polymorphic_bands>519 481</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACAGGAGATTTTTCGTAGTTT</pcr_primer_p1>
		<pcr_primer_p2>AGTTAGAAGCCCCAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>343</pcr_amplicon_size>
		<canonical_amplicon>AGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGGGTATGCATTCTATCGTGACGGTGTACAACGCCTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTTGCGGCGCCGCACCCTCAATCATCGTCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCCGCCTTTAATTATTGAAAAAAATGTGGAATTTTTTTTCAATTTTCAAATGTATTTTTTTGTAAATTTCAAAAATTGGGGCTTCTAACT</canonical_amplicon>
		<polymorphic_amplicon>AGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGGGTATGCATTCTATCGTRACGGTGTACAACGCCTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTTGCGGCGCCGCACCCTCAATCATCGTCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCCGCCTTTAATTATTGAAAAAAATGTGGAATTTTTTTTCAATTTTCAAATGTATTTTTTTGTAAATTTCAAAAATTGGGGCTTCTAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33405</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>43058</contig_pos>
        <strand>+</strand>
        <context>CAATCGGGCG[G/T]GCGCTTTCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCG</left_flank>
        <right_flank>GCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTTGCGGCGCCGCACCCTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCGATGATAACAGTAACTTTCAACTTTGAGCCAATTTATCTCGGTTCCTTCCAAAGATATTGAAAAGTTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTAATAGTTGACTACTTTTTGCTATCTTCCACAGGAACCGAGATAAATTAACTCAAAGTTTAATCGAAAAGTTAGAAAACTTTTCAGAAATTTTTTTTACTGTTTCAAATGTCGGTCATAATTTCTCAAAAATTGATTCATTATTAACAATTAGTCCAATGCAAAGAAGGAAAAAAGATAAAAACAATCGATTCCTGCTAAAAAGTGCTGACTTTCCGCCAAATCTTAAAATTCTAGGGCATCATCAGAAATGTTTTAAAGGTGGGGAGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGGGTATGCATTCTATCGTGACGGTGTACAACGCCTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTTGCGGCGCCGCACCCTCAATCATCGTCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCCGCCTTTAATTATTGAAAAAAATGTGGAATTTTTTTTCAATTTTCAAATGTATTTTTTTGTAAATTTCAAAAATTGGGGCTTCTAACTCTAAAATTACCGTTTCAATTGAAAGTTTTGGAAATTCGAGTCTTCAGTTTTCTTGATGTTTCGGCCCCTCTTGAAATATTTATTTTCTCAAAATTTCAATGGGTTGGGGGATTTGAGGATTTTAAGACACATTATCTGAGAGAATTGAGATCGGGTCAACAAAACTTTTTAAAAAAGCTGAAGTTCGTTTTTTTTTTGGGAGTTTCAATATTTTTTCACTGTTTCAAACCAACTATTCGAGACATGATTGTAAACCCAAACATTGTTCAATTGGATAAGT</canonical>
            <polymorphic>AAGCGATGATAACAGTAACTTTCAACTTTGAGCCAATTTATCTCGGTTCCTTCCAAAGATATTGAAAAGTTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTAATAGTTGACTACTTTTTGCTATCTTCCACAGGAACCGAGATAAATTAACTCAAAGTTTAATCGAAAAGTTAGAAAACTTTTCAGAAATTTTTTTTACTGTTTCAAATGTCGGTCATAATTTCTCAAAAATTGATTCATTATTAACAATTAGTCCAATGCAAAGAAGGAAAAAAGATAAAAACAATCGATTCCTGCTAAAAAGTGCTGACTTTCCGCCAAATCTTAAAATTCTAGGGCATCATCAGAAATGTTTTAAAGGTGGGGAGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGGGTATGCATTCTATCGTGACGGTGTACAACGCCTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGKGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTTGCGGCGCCGCACCCTCAATCATCGTCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCCGCCTTTAATTATTGAAAAAAATGTGGAATTTTTTTTCAATTTTCAAATGTATTTTTTTGTAAATTTCAAAAATTGGGGCTTCTAACTCTAAAATTACCGTTTCAATTGAAAGTTTTGGAAATTCGAGTCTTCAGTTTTCTTGATGTTTCGGCCCCTCTTGAAATATTTATTTTCTCAAAATTTCAATGGGTTGGGGGATTTGAGGATTTTAAGACACATTATCTGAGAGAATTGAGATCGGGTCAACAAAACTTTTTAAAAAAGCTGAAGTTCGTTTTTTTTTTGGGAGTTTCAATATTTTTTCACTGTTTCAAACCAACTATTCGAGACATGATTGTAAACCCAAACATTGTTCAATTGGATAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>368 326 170 91 25 20</canonical_bands>
                <polymorphic_bands>368 326 190 91 25</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>504 459 37</canonical_bands>
                <polymorphic_bands>541 459</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTACAACGCCTAATGTCACTCT</pcr_primer_p1>
		<pcr_primer_p2>AGTTAGAAGCCCCAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>GTACAACGCCTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTTGCGGCGCCGCACCCTCAATCATCGTCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCCGCCTTTAATTATTGAAAAAAATGTGGAATTTTTTTTCAATTTTCAAATGTATTTTTTTGTAAATTTCAAAAATTGGGGCTTCTAACT</canonical_amplicon>
		<polymorphic_amplicon>GTACAACGCCTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGKGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTTGCGGCGCCGCACCCTCAATCATCGTCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCCGCCTTTAATTATTGAAAAAAATGTGGAATTTTTTTTCAATTTTCAAATGTATTTTTTTGTAAATTTCAAAAATTGGGGCTTCTAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33406</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>43203</contig_pos>
        <strand>+</strand>
        <context>CCTTTAATTA[C/T]TGAAAAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCCGCCTTTAATTA</left_flank>
        <right_flank>TGAAAAAAATGTGGAATTTTTTTTCAATTTTCAAATGTATTTTTTTGTAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCGAGATAAATTAACTCAAAGTTTAATCGAAAAGTTAGAAAACTTTTCAGAAATTTTTTTTACTGTTTCAAATGTCGGTCATAATTTCTCAAAAATTGATTCATTATTAACAATTAGTCCAATGCAAAGAAGGAAAAAAGATAAAAACAATCGATTCCTGCTAAAAAGTGCTGACTTTCCGCCAAATCTTAAAATTCTAGGGCATCATCAGAAATGTTTTAAAGGTGGGGAGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGGGTATGCATTCTATCGTGACGGTGTACAACGCCTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTTGCGGCGCCGCACCCTCAATCATCGTCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCCGCCTTTAATTATTGAAAAAAATGTGGAATTTTTTTTCAATTTTCAAATGTATTTTTTTGTAAATTTCAAAAATTGGGGCTTCTAACTCTAAAATTACCGTTTCAATTGAAAGTTTTGGAAATTCGAGTCTTCAGTTTTCTTGATGTTTCGGCCCCTCTTGAAATATTTATTTTCTCAAAATTTCAATGGGTTGGGGGATTTGAGGATTTTAAGACACATTATCTGAGAGAATTGAGATCGGGTCAACAAAACTTTTTAAAAAAGCTGAAGTTCGTTTTTTTTTTGGGAGTTTCAATATTTTTTCACTGTTTCAAACCAACTATTCGAGACATGATTGTAAACCCAAACATTGTTCAATTGGATAAGTAGATTTACACAAAAATGAGTTTTTTGCAACAAAATAGTTTAAAAAAGCATGAATGTAGATTTTTCAGAGATACTGTGATTTTTAGAGCGTTTTCAAACACATCGTTTTCAATTTCGTTTATAATTCTTTGTTACATTTTTTCTCT</canonical>
            <polymorphic>AACCGAGATAAATTAACTCAAAGTTTAATCGAAAAGTTAGAAAACTTTTCAGAAATTTTTTTTACTGTTTCAAATGTCGGTCATAATTTCTCAAAAATTGATTCATTATTAACAATTAGTCCAATGCAAAGAAGGAAAAAAGATAAAAACAATCGATTCCTGCTAAAAAGTGCTGACTTTCCGCCAAATCTTAAAATTCTAGGGCATCATCAGAAATGTTTTAAAGGTGGGGAGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGGGTATGCATTCTATCGTGACGGTGTACAACGCCTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTTGCGGCGCCGCACCCTCAATCATCGTCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCCGCCTTTAATTAYTGAAAAAAATGTGGAATTTTTTTTCAATTTTCAAATGTATTTTTTTGTAAATTTCAAAAATTGGGGCTTCTAACTCTAAAATTACCGTTTCAATTGAAAGTTTTGGAAATTCGAGTCTTCAGTTTTCTTGATGTTTCGGCCCCTCTTGAAATATTTATTTTCTCAAAATTTCAATGGGTTGGGGGATTTGAGGATTTTAAGACACATTATCTGAGAGAATTGAGATCGGGTCAACAAAACTTTTTAAAAAAGCTGAAGTTCGTTTTTTTTTTGGGAGTTTCAATATTTTTTCACTGTTTCAAACCAACTATTCGAGACATGATTGTAAACCCAAACATTGTTCAATTGGATAAGTAGATTTACACAAAAATGAGTTTTTTGCAACAAAATAGTTTAAAAAAGCATGAATGTAGATTTTTCAGAGATACTGTGATTTTTAGAGCGTTTTCAAACACATCGTTTTCAATTTCGTTTATAATTCTTTGTTACATTTTTTCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGCCTTTATGTATGCAATC</pcr_primer_p1>
		<pcr_primer_p2>TAGAGTTAGAAGCCCCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCGCCTTTATGTATGCAATCGGGCGGGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTTGCGGCGCCGCACCCTCAATCATCGTCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCCGCCTTTAATTATTGAAAAAAATGTGGAATTTTTTTTCAATTTTCAAATGTATTTTTTTGTAAATTTCAAAAATTGGGGCTTCTAACTCTA</canonical_amplicon>
		<polymorphic_amplicon>TCGCCTTTATGTATGCAATCGGGCGGGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTTGCGGCGCCGCACCCTCAATCATCGTCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCCGCCTTTAATTAYTGAAAAAAATGTGGAATTTTTTTTCAATTTTCAAATGTATTTTTTTGTAAATTTCAAAAATTGGGGCTTCTAACTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33407</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>43308</contig_pos>
        <strand>+</strand>
        <context>TGAAAGTTTT[C/G]GAAATTCGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAAAAATTGGGGCTTCTAACTCTAAAATTACCGTTTCAATTGAAAGTTTT</left_flank>
        <right_flank>GAAATTCGAGTCTTCAGTTTTCTTGATGTTTCGGCCCCTCTTGAAATATT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATTAACAATTAGTCCAATGCAAAGAAGGAAAAAAGATAAAAACAATCGATTCCTGCTAAAAAGTGCTGACTTTCCGCCAAATCTTAAAATTCTAGGGCATCATCAGAAATGTTTTAAAGGTGGGGAGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGGGTATGCATTCTATCGTGACGGTGTACAACGCCTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTTGCGGCGCCGCACCCTCAATCATCGTCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCCGCCTTTAATTATTGAAAAAAATGTGGAATTTTTTTTCAATTTTCAAATGTATTTTTTTGTAAATTTCAAAAATTGGGGCTTCTAACTCTAAAATTACCGTTTCAATTGAAAGTTTTGGAAATTCGAGTCTTCAGTTTTCTTGATGTTTCGGCCCCTCTTGAAATATTTATTTTCTCAAAATTTCAATGGGTTGGGGGATTTGAGGATTTTAAGACACATTATCTGAGAGAATTGAGATCGGGTCAACAAAACTTTTTAAAAAAGCTGAAGTTCGTTTTTTTTTTGGGAGTTTCAATATTTTTTCACTGTTTCAAACCAACTATTCGAGACATGATTGTAAACCCAAACATTGTTCAATTGGATAAGTAGATTTACACAAAAATGAGTTTTTTGCAACAAAATAGTTTAAAAAAGCATGAATGTAGATTTTTCAGAGATACTGTGATTTTTAGAGCGTTTTCAAACACATCGTTTTCAATTTCGTTTATAATTCTTTGTTACATTTTTTCTCTGTTTCAATTGAATGGGAGAAAACAATAAATGCCTCCCCTTCGTTGAAATAAATAAATAATTATATTATTATATTATAATGCCTAAACCACCGATTTCACTATAAT</canonical>
            <polymorphic>TTATTAACAATTAGTCCAATGCAAAGAAGGAAAAAAGATAAAAACAATCGATTCCTGCTAAAAAGTGCTGACTTTCCGCCAAATCTTAAAATTCTAGGGCATCATCAGAAATGTTTTAAAGGTGGGGAGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGGGTATGCATTCTATCGTGACGGTGTACAACGCCTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTTGCGGCGCCGCACCCTCAATCATCGTCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCCGCCTTTAATTATTGAAAAAAATGTGGAATTTTTTTTCAATTTTCAAATGTATTTTTTTGTAAATTTCAAAAATTGGGGCTTCTAACTCTAAAATTACCGTTTCAATTGAAAGTTTTSGAAATTCGAGTCTTCAGTTTTCTTGATGTTTCGGCCCCTCTTGAAATATTTATTTTCTCAAAATTTCAATGGGTTGGGGGATTTGAGGATTTTAAGACACATTATCTGAGAGAATTGAGATCGGGTCAACAAAACTTTTTAAAAAAGCTGAAGTTCGTTTTTTTTTTGGGAGTTTCAATATTTTTTCACTGTTTCAAACCAACTATTCGAGACATGATTGTAAACCCAAACATTGTTCAATTGGATAAGTAGATTTACACAAAAATGAGTTTTTTGCAACAAAATAGTTTAAAAAAGCATGAATGTAGATTTTTCAGAGATACTGTGATTTTTAGAGCGTTTTCAAACACATCGTTTTCAATTTCGTTTATAATTCTTTGTTACATTTTTTCTCTGTTTCAATTGAATGGGAGAAAACAATAAATGCCTCCCCTTCGTTGAAATAAATAAATAATTATATTATTATATTATAATGCCTAAACCACCGATTTCACTATAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTGGGGCTTCTAACT</pcr_primer_p1>
		<pcr_primer_p2>ATAGTTGGTTTGAAACAGTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTGGGGCTTCTAACTCTAAAATTACCGTTTCAATTGAAAGTTTTGGAAATTCGAGTCTTCAGTTTTCTTGATGTTTCGGCCCCTCTTGAAATATTTATTTTCTCAAAATTTCAATGGGTTGGGGGATTTGAGGATTTTAAGACACATTATCTGAGAGAATTGAGATCGGGTCAACAAAACTTTTTAAAAAAGCTGAAGTTCGTTTTTTTTTTGGGAGTTTCAATATTTTTTCACTGTTTCAAACCAACTAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTGGGGCTTCTAACTCTAAAATTACCGTTTCAATTGAAAGTTTTSGAAATTCGAGTCTTCAGTTTTCTTGATGTTTCGGCCCCTCTTGAAATATTTATTTTCTCAAAATTTCAATGGGTTGGGGGATTTGAGGATTTTAAGACACATTATCTGAGAGAATTGAGATCGGGTCAACAAAACTTTTTAAAAAAGCTGAAGTTCGTTTTTTTTTTGGGAGTTTCAATATTTTTTCACTGTTTCAAACCAACTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33408</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>43718</contig_pos>
        <strand>+</strand>
        <context>CAATTGAATG[G/T]GAGAAAACAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTTCGTTTATAATTCTTTGTTACATTTTTTCTCTGTTTCAATTGAATG</left_flank>
        <right_flank>GAGAAAACAATAAATGCCTCCCCTTCGTTGAAATAAATAAATAATTATAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTTTCAATTTTCAAATGTATTTTTTTGTAAATTTCAAAAATTGGGGCTTCTAACTCTAAAATTACCGTTTCAATTGAAAGTTTTGGAAATTCGAGTCTTCAGTTTTCTTGATGTTTCGGCCCCTCTTGAAATATTTATTTTCTCAAAATTTCAATGGGTTGGGGGATTTGAGGATTTTAAGACACATTATCTGAGAGAATTGAGATCGGGTCAACAAAACTTTTTAAAAAAGCTGAAGTTCGTTTTTTTTTTGGGAGTTTCAATATTTTTTCACTGTTTCAAACCAACTATTCGAGACATGATTGTAAACCCAAACATTGTTCAATTGGATAAGTAGATTTACACAAAAATGAGTTTTTTGCAACAAAATAGTTTAAAAAAGCATGAATGTAGATTTTTCAGAGATACTGTGATTTTTAGAGCGTTTTCAAACACATCGTTTTCAATTTCGTTTATAATTCTTTGTTACATTTTTTCTCTGTTTCAATTGAATGGGAGAAAACAATAAATGCCTCCCCTTCGTTGAAATAAATAAATAATTATATTATTATATTATAATGCCTAAACCACCGATTTCACTATAATTAGCAAATGTAAATTTTTCAAATAACCAAATGACTACTACAGAGTTTTTTAGAATTGTATCAAAATTTCAAAATTAGAAATAAAAAAATAGTTAATTTCGGAAAAAAAGAGCTTTAAAAAAATTTTCCTAAACAAAATTTTTACTGTTTCAAATTAATATTTTCCTCTAGTGCAATGCGCAGGAAACTATCATGCTAGAAAACTTTTTGAAAGTTTAAAACGAGCTAATAATACCATTTCATATTTTATTCATAAAATTTCAAATTCCCGCCAAACCCTAGCCTCCAGGCCATCAACAGAAGCGTTTTCCAAATGAACACTTATTGGAAATTTTCTACTGTTTCAAATCAGTAGTGTGTAGTTCCTCAAAAGTATATTATTGATAATGCGCAGACAACCTACAAGGCTAA</canonical>
            <polymorphic>ATTTTTTTTCAATTTTCAAATGTATTTTTTTGTAAATTTCAAAAATTGGGGCTTCTAACTCTAAAATTACCGTTTCAATTGAAAGTTTTGGAAATTCGAGTCTTCAGTTTTCTTGATGTTTCGGCCCCTCTTGAAATATTTATTTTCTCAAAATTTCAATGGGTTGGGGGATTTGAGGATTTTAAGACACATTATCTGAGAGAATTGAGATCGGGTCAACAAAACTTTTTAAAAAAGCTGAAGTTCGTTTTTTTTTTGGGAGTTTCAATATTTTTTCACTGTTTCAAACCAACTATTCGAGACATGATTGTAAACCCAAACATTGTTCAATTGGATAAGTAGATTTACACAAAAATGAGTTTTTTGCAACAAAATAGTTTAAAAAAGCATGAATGTAGATTTTTCAGAGATACTGTGATTTTTAGAGCGTTTTCAAACACATCGTTTTCAATTTCGTTTATAATTCTTTGTTACATTTTTTCTCTGTTTCAATTGAATGKGAGAAAACAATAAATGCCTCCCCTTCGTTGAAATAAATAAATAATTATATTATTATATTATAATGCCTAAACCACCGATTTCACTATAATTAGCAAATGTAAATTTTTCAAATAACCAAATGACTACTACAGAGTTTTTTAGAATTGTATCAAAATTTCAAAATTAGAAATAAAAAAATAGTTAATTTCGGAAAAAAAGAGCTTTAAAAAAATTTTCCTAAACAAAATTTTTACTGTTTCAAATTAATATTTTCCTCTAGTGCAATGCGCAGGAAACTATCATGCTAGAAAACTTTTTGAAAGTTTAAAACGAGCTAATAATACCATTTCATATTTTATTCATAAAATTTCAAATTCCCGCCAAACCCTAGCCTCCAGGCCATCAACAGAAGCGTTTTCCAAATGAACACTTATTGGAAATTTTCTACTGTTTCAAATCAGTAGTGTGTAGTTCCTCAAAAGTATATTATTGATAATGCGCAGACAACCTACAAGGCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATAAGTAGATTTACACAAAAATGA</pcr_primer_p1>
		<pcr_primer_p2>TTATAGTGAAATCGGTGGTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>GGATAAGTAGATTTACACAAAAATGAGTTTTTTGCAACAAAATAGTTTAAAAAAGCATGAATGTAGATTTTTCAGAGATACTGTGATTTTTAGAGCGTTTTCAAACACATCGTTTTCAATTTCGTTTATAATTCTTTGTTACATTTTTTCTCTGTTTCAATTGAATGGGAGAAAACAATAAATGCCTCCCCTTCGTTGAAATAAATAAATAATTATATTATTATATTATAATGCCTAAACCACCGATTTCACTATAA</canonical_amplicon>
		<polymorphic_amplicon>GGATAAGTAGATTTACACAAAAATGAGTTTTTTGCAACAAAATAGTTTAAAAAAGCATGAATGTAGATTTTTCAGAGATACTGTGATTTTTAGAGCGTTTTCAAACACATCGTTTTCAATTTCGTTTATAATTCTTTGTTACATTTTTTCTCTGTTTCAATTGAATGKGAGAAAACAATAAATGCCTCCCCTTCGTTGAAATAAATAAATAATTATATTATTATATTATAATGCCTAAACCACCGATTTCACTATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33409</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>43732</contig_pos>
        <strand>+</strand>
        <context>AAAACAATAA[A/G]TGCCTCCCCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTTTGTTACATTTTTTCTCTGTTTCAATTGAATGGGAGAAAACAATAA</left_flank>
        <right_flank>TGCCTCCCCTTCGTTGAAATAAATAAATAATTATATTATTATATTATAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAAATGTATTTTTTTGTAAATTTCAAAAATTGGGGCTTCTAACTCTAAAATTACCGTTTCAATTGAAAGTTTTGGAAATTCGAGTCTTCAGTTTTCTTGATGTTTCGGCCCCTCTTGAAATATTTATTTTCTCAAAATTTCAATGGGTTGGGGGATTTGAGGATTTTAAGACACATTATCTGAGAGAATTGAGATCGGGTCAACAAAACTTTTTAAAAAAGCTGAAGTTCGTTTTTTTTTTGGGAGTTTCAATATTTTTTCACTGTTTCAAACCAACTATTCGAGACATGATTGTAAACCCAAACATTGTTCAATTGGATAAGTAGATTTACACAAAAATGAGTTTTTTGCAACAAAATAGTTTAAAAAAGCATGAATGTAGATTTTTCAGAGATACTGTGATTTTTAGAGCGTTTTCAAACACATCGTTTTCAATTTCGTTTATAATTCTTTGTTACATTTTTTCTCTGTTTCAATTGAATGGGAGAAAACAATAAATGCCTCCCCTTCGTTGAAATAAATAAATAATTATATTATTATATTATAATGCCTAAACCACCGATTTCACTATAATTAGCAAATGTAAATTTTTCAAATAACCAAATGACTACTACAGAGTTTTTTAGAATTGTATCAAAATTTCAAAATTAGAAATAAAAAAATAGTTAATTTCGGAAAAAAAGAGCTTTAAAAAAATTTTCCTAAACAAAATTTTTACTGTTTCAAATTAATATTTTCCTCTAGTGCAATGCGCAGGAAACTATCATGCTAGAAAACTTTTTGAAAGTTTAAAACGAGCTAATAATACCATTTCATATTTTATTCATAAAATTTCAAATTCCCGCCAAACCCTAGCCTCCAGGCCATCAACAGAAGCGTTTTCCAAATGAACACTTATTGGAAATTTTCTACTGTTTCAAATCAGTAGTGTGTAGTTCCTCAAAAGTATATTATTGATAATGCGCAGACAACCTACAAGGCTAAAAAAAGTCTTCGGA</canonical>
            <polymorphic>TTCAAATGTATTTTTTTGTAAATTTCAAAAATTGGGGCTTCTAACTCTAAAATTACCGTTTCAATTGAAAGTTTTGGAAATTCGAGTCTTCAGTTTTCTTGATGTTTCGGCCCCTCTTGAAATATTTATTTTCTCAAAATTTCAATGGGTTGGGGGATTTGAGGATTTTAAGACACATTATCTGAGAGAATTGAGATCGGGTCAACAAAACTTTTTAAAAAAGCTGAAGTTCGTTTTTTTTTTGGGAGTTTCAATATTTTTTCACTGTTTCAAACCAACTATTCGAGACATGATTGTAAACCCAAACATTGTTCAATTGGATAAGTAGATTTACACAAAAATGAGTTTTTTGCAACAAAATAGTTTAAAAAAGCATGAATGTAGATTTTTCAGAGATACTGTGATTTTTAGAGCGTTTTCAAACACATCGTTTTCAATTTCGTTTATAATTCTTTGTTACATTTTTTCTCTGTTTCAATTGAATGGGAGAAAACAATAARTGCCTCCCCTTCGTTGAAATAAATAAATAATTATATTATTATATTATAATGCCTAAACCACCGATTTCACTATAATTAGCAAATGTAAATTTTTCAAATAACCAAATGACTACTACAGAGTTTTTTAGAATTGTATCAAAATTTCAAAATTAGAAATAAAAAAATAGTTAATTTCGGAAAAAAAGAGCTTTAAAAAAATTTTCCTAAACAAAATTTTTACTGTTTCAAATTAATATTTTCCTCTAGTGCAATGCGCAGGAAACTATCATGCTAGAAAACTTTTTGAAAGTTTAAAACGAGCTAATAATACCATTTCATATTTTATTCATAAAATTTCAAATTCCCGCCAAACCCTAGCCTCCAGGCCATCAACAGAAGCGTTTTCCAAATGAACACTTATTGGAAATTTTCTACTGTTTCAAATCAGTAGTGTGTAGTTCCTCAAAAGTATATTATTGATAATGCGCAGACAACCTACAAGGCTAAAAAAAGTCTTCGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATAAGTAGATTTACACAAAAATGA</pcr_primer_p1>
		<pcr_primer_p2>TTATAGTGAAATCGGTGGTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>GGATAAGTAGATTTACACAAAAATGAGTTTTTTGCAACAAAATAGTTTAAAAAAGCATGAATGTAGATTTTTCAGAGATACTGTGATTTTTAGAGCGTTTTCAAACACATCGTTTTCAATTTCGTTTATAATTCTTTGTTACATTTTTTCTCTGTTTCAATTGAATGGGAGAAAACAATAAATGCCTCCCCTTCGTTGAAATAAATAAATAATTATATTATTATATTATAATGCCTAAACCACCGATTTCACTATAA</canonical_amplicon>
		<polymorphic_amplicon>GGATAAGTAGATTTACACAAAAATGAGTTTTTTGCAACAAAATAGTTTAAAAAAGCATGAATGTAGATTTTTCAGAGATACTGTGATTTTTAGAGCGTTTTCAAACACATCGTTTTCAATTTCGTTTATAATTCTTTGTTACATTTTTTCTCTGTTTCAATTGAATGGGAGAAAACAATAARTGCCTCCCCTTCGTTGAAATAAATAAATAATTATATTATTATATTATAATGCCTAAACCACCGATTTCACTATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33410</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>43844</contig_pos>
        <strand>+</strand>
        <context>CCAAATGACT[A/G]CTACAGAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGATTTCACTATAATTAGCAAATGTAAATTTTTCAAATAACCAAATGACT</left_flank>
        <right_flank>CTACAGAGTTTTTTAGAATTGTATCAAAATTTCAAAATTAGAAATAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCTTGAAATATTTATTTTCTCAAAATTTCAATGGGTTGGGGGATTTGAGGATTTTAAGACACATTATCTGAGAGAATTGAGATCGGGTCAACAAAACTTTTTAAAAAAGCTGAAGTTCGTTTTTTTTTTGGGAGTTTCAATATTTTTTCACTGTTTCAAACCAACTATTCGAGACATGATTGTAAACCCAAACATTGTTCAATTGGATAAGTAGATTTACACAAAAATGAGTTTTTTGCAACAAAATAGTTTAAAAAAGCATGAATGTAGATTTTTCAGAGATACTGTGATTTTTAGAGCGTTTTCAAACACATCGTTTTCAATTTCGTTTATAATTCTTTGTTACATTTTTTCTCTGTTTCAATTGAATGGGAGAAAACAATAAATGCCTCCCCTTCGTTGAAATAAATAAATAATTATATTATTATATTATAATGCCTAAACCACCGATTTCACTATAATTAGCAAATGTAAATTTTTCAAATAACCAAATGACTACTACAGAGTTTTTTAGAATTGTATCAAAATTTCAAAATTAGAAATAAAAAAATAGTTAATTTCGGAAAAAAAGAGCTTTAAAAAAATTTTCCTAAACAAAATTTTTACTGTTTCAAATTAATATTTTCCTCTAGTGCAATGCGCAGGAAACTATCATGCTAGAAAACTTTTTGAAAGTTTAAAACGAGCTAATAATACCATTTCATATTTTATTCATAAAATTTCAAATTCCCGCCAAACCCTAGCCTCCAGGCCATCAACAGAAGCGTTTTCCAAATGAACACTTATTGGAAATTTTCTACTGTTTCAAATCAGTAGTGTGTAGTTCCTCAAAAGTATATTATTGATAATGCGCAGACAACCTACAAGGCTAAAAAAAGTCTTCGGAAGTCCGAAAACCACCCACTACTAGTAAAAAATTTTTATTCTAACGATTTTTTTAATTTGAAAAAAAAGCCGGAAACACATTCTGTTCAACTTTCAAATGCATTTTTTGTGCA</canonical>
            <polymorphic>CCTCTTGAAATATTTATTTTCTCAAAATTTCAATGGGTTGGGGGATTTGAGGATTTTAAGACACATTATCTGAGAGAATTGAGATCGGGTCAACAAAACTTTTTAAAAAAGCTGAAGTTCGTTTTTTTTTTGGGAGTTTCAATATTTTTTCACTGTTTCAAACCAACTATTCGAGACATGATTGTAAACCCAAACATTGTTCAATTGGATAAGTAGATTTACACAAAAATGAGTTTTTTGCAACAAAATAGTTTAAAAAAGCATGAATGTAGATTTTTCAGAGATACTGTGATTTTTAGAGCGTTTTCAAACACATCGTTTTCAATTTCGTTTATAATTCTTTGTTACATTTTTTCTCTGTTTCAATTGAATGGGAGAAAACAATAAATGCCTCCCCTTCGTTGAAATAAATAAATAATTATATTATTATATTATAATGCCTAAACCACCGATTTCACTATAATTAGCAAATGTAAATTTTTCAAATAACCAAATGACTRCTACAGAGTTTTTTAGAATTGTATCAAAATTTCAAAATTAGAAATAAAAAAATAGTTAATTTCGGAAAAAAAGAGCTTTAAAAAAATTTTCCTAAACAAAATTTTTACTGTTTCAAATTAATATTTTCCTCTAGTGCAATGCGCAGGAAACTATCATGCTAGAAAACTTTTTGAAAGTTTAAAACGAGCTAATAATACCATTTCATATTTTATTCATAAAATTTCAAATTCCCGCCAAACCCTAGCCTCCAGGCCATCAACAGAAGCGTTTTCCAAATGAACACTTATTGGAAATTTTCTACTGTTTCAAATCAGTAGTGTGTAGTTCCTCAAAAGTATATTATTGATAATGCGCAGACAACCTACAAGGCTAAAAAAAGTCTTCGGAAGTCCGAAAACCACCCACTACTAGTAAAAAATTTTTATTCTAACGATTTTTTTAATTTGAAAAAAAAGCCGGAAACACATTCTGTTCAACTTTCAAATGCATTTTTTGTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAAACCACCGATTTCACTATAA</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAAAAGTTTTCTAGCATGA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>CTAAACCACCGATTTCACTATAATTAGCAAATGTAAATTTTTCAAATAACCAAATGACTACTACAGAGTTTTTTAGAATTGTATCAAAATTTCAAAATTAGAAATAAAAAAATAGTTAATTTCGGAAAAAAAGAGCTTTAAAAAAATTTTCCTAAACAAAATTTTTACTGTTTCAAATTAATATTTTCCTCTAGTGCAATGCGCAGGAAACTATCATGCTAGAAAACTTTTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>CTAAACCACCGATTTCACTATAATTAGCAAATGTAAATTTTTCAAATAACCAAATGACTRCTACAGAGTTTTTTAGAATTGTATCAAAATTTCAAAATTAGAAATAAAAAAATAGTTAATTTCGGAAAAAAAGAGCTTTAAAAAAATTTTCCTAAACAAAATTTTTACTGTTTCAAATTAATATTTTCCTCTAGTGCAATGCGCAGGAAACTATCATGCTAGAAAACTTTTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33411</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>43895</contig_pos>
        <strand></strand>
        <context>GAAATAAAAA[A/G]ATAGTTAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTACAGAGTTTTTTAGAATTGTATCAAAATTTCAAAATTAGAAATAAAAA</left_flank>
        <right_flank>ATAGTTAATTTCGGAAAAAAAGAGCTTTAAAAAAATTTTCCTAAACAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTTAAGACACATTATCTGAGAGAATTGAGATCGGGTCAACAAAACTTTTTAAAAAAGCTGAAGTTCGTTTTTTTTTTGGGAGTTTCAATATTTTTTCACTGTTTCAAACCAACTATTCGAGACATGATTGTAAACCCAAACATTGTTCAATTGGATAAGTAGATTTACACAAAAATGAGTTTTTTGCAACAAAATAGTTTAAAAAAGCATGAATGTAGATTTTTCAGAGATACTGTGATTTTTAGAGCGTTTTCAAACACATCGTTTTCAATTTCGTTTATAATTCTTTGTTACATTTTTTCTCTGTTTCAATTGAATGGGAGAAAACAATAAATGCCTCCCCTTCGTTGAAATAAATAAATAATTATATTATTATATTATAATGCCTAAACCACCGATTTCACTATAATTAGCAAATGTAAATTTTTCAAATAACCAAATGACTACTACAGAGTTTTTTAGAATTGTATCAAAATTTCAAAATTAGAAATAAAAAAATAGTTAATTTCGGAAAAAAAGAGCTTTAAAAAAATTTTCCTAAACAAAATTTTTACTGTTTCAAATTAATATTTTCCTCTAGTGCAATGCGCAGGAAACTATCATGCTAGAAAACTTTTTGAAAGTTTAAAACGAGCTAATAATACCATTTCATATTTTATTCATAAAATTTCAAATTCCCGCCAAACCCTAGCCTCCAGGCCATCAACAGAAGCGTTTTCCAAATGAACACTTATTGGAAATTTTCTACTGTTTCAAATCAGTAGTGTGTAGTTCCTCAAAAGTATATTATTGATAATGCGCAGACAACCTACAAGGCTAAAAAAAGTCTTCGGAAGTCCGAAAACCACCCACTACTAGTAAAAAATTTTTATTCTAACGATTTTTTTAATTTGAAAAAAAAGCCGGAAACACATTCTGTTCAACTTTCAAATGCATTTTTTGTGCATTTCAAAAAAAGGACTTCTAACTTCAAAATTACTGTTTCAAACAAAAATGT</canonical>
            <polymorphic>GATTTTAAGACACATTATCTGAGAGAATTGAGATCGGGTCAACAAAACTTTTTAAAAAAGCTGAAGTTCGTTTTTTTTTTGGGAGTTTCAATATTTTTTCACTGTTTCAAACCAACTATTCGAGACATGATTGTAAACCCAAACATTGTTCAATTGGATAAGTAGATTTACACAAAAATGAGTTTTTTGCAACAAAATAGTTTAAAAAAGCATGAATGTAGATTTTTCAGAGATACTGTGATTTTTAGAGCGTTTTCAAACACATCGTTTTCAATTTCGTTTATAATTCTTTGTTACATTTTTTCTCTGTTTCAATTGAATGGGAGAAAACAATAAATGCCTCCCCTTCGTTGAAATAAATAAATAATTATATTATTATATTATAATGCCTAAACCACCGATTTCACTATAATTAGCAAATGTAAATTTTTCAAATAACCAAATGACTACTACAGAGTTTTTTAGAATTGTATCAAAATTTCAAAATTAGAAATAAAAARATAGTTAATTTCGGAAAAAAAGAGCTTTAAAAAAATTTTCCTAAACAAAATTTTTACTGTTTCAAATTAATATTTTCCTCTAGTGCAATGCGCAGGAAACTATCATGCTAGAAAACTTTTTGAAAGTTTAAAACGAGCTAATAATACCATTTCATATTTTATTCATAAAATTTCAAATTCCCGCCAAACCCTAGCCTCCAGGCCATCAACAGAAGCGTTTTCCAAATGAACACTTATTGGAAATTTTCTACTGTTTCAAATCAGTAGTGTGTAGTTCCTCAAAAGTATATTATTGATAATGCGCAGACAACCTACAAGGCTAAAAAAAGTCTTCGGAAGTCCGAAAACCACCCACTACTAGTAAAAAATTTTTATTCTAACGATTTTTTTAATTTGAAAAAAAAGCCGGAAACACATTCTGTTCAACTTTCAAATGCATTTTTTGTGCATTTCAAAAAAAGGACTTCTAACTTCAAAATTACTGTTTCAAACAAAAATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAAACCACCGATTTCACTATAA</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAAAAGTTTTCTAGCATGA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>CTAAACCACCGATTTCACTATAATTAGCAAATGTAAATTTTTCAAATAACCAAATGACTACTACAGAGTTTTTTAGAATTGTATCAAAATTTCAAAATTAGAAATAAAAAAATAGTTAATTTCGGAAAAAAAGAGCTTTAAAAAAATTTTCCTAAACAAAATTTTTACTGTTTCAAATTAATATTTTCCTCTAGTGCAATGCGCAGGAAACTATCATGCTAGAAAACTTTTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>CTAAACCACCGATTTCACTATAATTAGCAAATGTAAATTTTTCAAATAACCAAATGACTACTACAGAGTTTTTTAGAATTGTATCAAAATTTCAAAATTAGAAATAAAAARATAGTTAATTTCGGAAAAAAAGAGCTTTAAAAAAATTTTCCTAAACAAAATTTTTACTGTTTCAAATTAATATTTTCCTCTAGTGCAATGCGCAGGAAACTATCATGCTAGAAAACTTTTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33412</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>44094</contig_pos>
        <strand>+</strand>
        <context>CCCTAGCCTC[C/T]AGGCCATCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTCATATTTTATTCATAAAATTTCAAATTCCCGCCAAACCCTAGCCTC</left_flank>
        <right_flank>AGGCCATCAACAGAAGCGTTTTCCAAATGAACACTTATTGGAAATTTTCT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTAAAAAAGCATGAATGTAGATTTTTCAGAGATACTGTGATTTTTAGAGCGTTTTCAAACACATCGTTTTCAATTTCGTTTATAATTCTTTGTTACATTTTTTCTCTGTTTCAATTGAATGGGAGAAAACAATAAATGCCTCCCCTTCGTTGAAATAAATAAATAATTATATTATTATATTATAATGCCTAAACCACCGATTTCACTATAATTAGCAAATGTAAATTTTTCAAATAACCAAATGACTACTACAGAGTTTTTTAGAATTGTATCAAAATTTCAAAATTAGAAATAAAAAAATAGTTAATTTCGGAAAAAAAGAGCTTTAAAAAAATTTTCCTAAACAAAATTTTTACTGTTTCAAATTAATATTTTCCTCTAGTGCAATGCGCAGGAAACTATCATGCTAGAAAACTTTTTGAAAGTTTAAAACGAGCTAATAATACCATTTCATATTTTATTCATAAAATTTCAAATTCCCGCCAAACCCTAGCCTCCAGGCCATCAACAGAAGCGTTTTCCAAATGAACACTTATTGGAAATTTTCTACTGTTTCAAATCAGTAGTGTGTAGTTCCTCAAAAGTATATTATTGATAATGCGCAGACAACCTACAAGGCTAAAAAAAGTCTTCGGAAGTCCGAAAACCACCCACTACTAGTAAAAAATTTTTATTCTAACGATTTTTTTAATTTGAAAAAAAAGCCGGAAACACATTCTGTTCAACTTTCAAATGCATTTTTTGTGCATTTCAAAAAAAGGACTTCTAACTTCAAAATTACTGTTTCAAACAAAAATGTTATGAATTCAAGTATTCAATTTTTTATTGTATTTCCAGAAGTTAACCAATAGATTTTCTGGGAATTCCTATACTGGGGTTTTCAAGATTTCCAAAAACTAATGTTAGTTTTTCTTGGGTATAAATTTTTTTTGGTTTCAAAAAAGCTATATTTGACAACATTGGGAATTTAGACGTTTTACCTATAATACGTTTGTCTT</canonical>
            <polymorphic>GTTTAAAAAAGCATGAATGTAGATTTTTCAGAGATACTGTGATTTTTAGAGCGTTTTCAAACACATCGTTTTCAATTTCGTTTATAATTCTTTGTTACATTTTTTCTCTGTTTCAATTGAATGGGAGAAAACAATAAATGCCTCCCCTTCGTTGAAATAAATAAATAATTATATTATTATATTATAATGCCTAAACCACCGATTTCACTATAATTAGCAAATGTAAATTTTTCAAATAACCAAATGACTACTACAGAGTTTTTTAGAATTGTATCAAAATTTCAAAATTAGAAATAAAAAAATAGTTAATTTCGGAAAAAAAGAGCTTTAAAAAAATTTTCCTAAACAAAATTTTTACTGTTTCAAATTAATATTTTCCTCTAGTGCAATGCGCAGGAAACTATCATGCTAGAAAACTTTTTGAAAGTTTAAAACGAGCTAATAATACCATTTCATATTTTATTCATAAAATTTCAAATTCCCGCCAAACCCTAGCCTCYAGGCCATCAACAGAAGCGTTTTCCAAATGAACACTTATTGGAAATTTTCTACTGTTTCAAATCAGTAGTGTGTAGTTCCTCAAAAGTATATTATTGATAATGCGCAGACAACCTACAAGGCTAAAAAAAGTCTTCGGAAGTCCGAAAACCACCCACTACTAGTAAAAAATTTTTATTCTAACGATTTTTTTAATTTGAAAAAAAAGCCGGAAACACATTCTGTTCAACTTTCAAATGCATTTTTTGTGCATTTCAAAAAAAGGACTTCTAACTTCAAAATTACTGTTTCAAACAAAAATGTTATGAATTCAAGTATTCAATTTTTTATTGTATTTCCAGAAGTTAACCAATAGATTTTCTGGGAATTCCTATACTGGGGTTTTCAAGATTTCCAAAAACTAATGTTAGTTTTTCTTGGGTATAAATTTTTTTTGGTTTCAAAAAAGCTATATTTGACAACATTGGGAATTTAGACGTTTTACCTATAATACGTTTGTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCCTAAACAAAATTTTTACTGT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAGGAACTACACACTACTGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTCCTAAACAAAATTTTTACTGTTTCAAATTAATATTTTCCTCTAGTGCAATGCGCAGGAAACTATCATGCTAGAAAACTTTTTGAAAGTTTAAAACGAGCTAATAATACCATTTCATATTTTATTCATAAAATTTCAAATTCCCGCCAAACCCTAGCCTCCAGGCCATCAACAGAAGCGTTTTCCAAATGAACACTTATTGGAAATTTTCTACTGTTTCAAATCAGTAGTGTGTAGTTCCTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCCTAAACAAAATTTTTACTGTTTCAAATTAATATTTTCCTCTAGTGCAATGCGCAGGAAACTATCATGCTAGAAAACTTTTTGAAAGTTTAAAACGAGCTAATAATACCATTTCATATTTTATTCATAAAATTTCAAATTCCCGCCAAACCCTAGCCTCYAGGCCATCAACAGAAGCGTTTTCCAAATGAACACTTATTGGAAATTTTCTACTGTTTCAAATCAGTAGTGTGTAGTTCCTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33413</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>58245</contig_pos>
        <strand>+</strand>
        <context>TATTTTTCAG[C/T]CTGTCTACCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTGAACCCTTTAAATAATTTTTGAAACAGTTAAAAATATTTTTCAG</left_flank>
        <right_flank>CTGTCTACCGTTCCTATCGCTCTGCTGAATGCAGTTGGGCTGCATTTTAT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAAAAAAAATTTTAAAAGAGGCGAGACAGCAAAAATTTCGGGGGACAGGTCGGGGGGACGAAATCGCGCCGCGCTTATGTAGACCATCGGCCGTCAGGCGCCTTCGCGCCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCCGAGCTGCCTGTCATGAGTTCAACCCCTCATGGGGGTTCTCTATGCAAAAAATCAGGAAAACTTTTTTTGGTGTCTGGCCTCCTTTAATTAAAAAAAACAATTTTTGAAACAGCAATTTTTTTTGAGTTTGAAGTTTTGAGAATTTATGGGTGAGTGAGATCCTGAATTTCTGAACTTTTGAACTTTTGAAATTTTAGAACTTTGATGAATGCTGATTTAGCTGAAACTTTATGTTTAAAAATGTTTTTTTTTCAATTTTTGGAATTCATTTTTAAGATTATGCTTCGTCTAACAATAGTTAATTTTTTTGAACCCTTTAAATAATTTTTGAAACAGTTAAAAATATTTTTCAGCCTGTCTACCGTTCCTATCGCTCTGCTGAATGCAGTTGGGCTGCATTTTATATAAAACTGGTCAACATTTTTCGCTATTTTCTACCGATTCTTATGATTTTTTTAACTGATGTGAGTTTTGCAAGCGCATTTTTAATGGGTTACGGTAGTCCATTTTCAGGGTCTCTGGAAAAAGACAAACACATTTCGAGAGGTTCCAAGTGTTTCGGTGACTGGCGATTTTATAGTTTACGGTTACGGTAGGTTTTGAATTTGAAAATTTTAGAACTTCTGAGTTTTACAATTTCAGAATTCTCGAATCAAAGAATATCTGAATTTCTGAATTTTCGATTTTTCTAATGTTTGAATTAATTTTCAGGTCACCAAAAATCGATAATCTCCTCTTCATATCCAGTTTTAAATGCGGCAGCTTCTGCTGAGCAATTCTCCACTTCTCAAATTTTACACCATTTCGAAGAAGTGAATGATAATGAAAATGTAAGAAAATATACTCCCCAAGTT</canonical>
            <polymorphic>GAGAAAAAAAATTTTAAAAGAGGCGAGACAGCAAAAATTTCGGGGGACAGGTCGGGGGGACGAAATCGCGCCGCGCTTATGTAGACCATCGGCCGTCAGGCGCCTTCGCGCCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCCGAGCTGCCTGTCATGAGTTCAACCCCTCATGGGGGTTCTCTATGCAAAAAATCAGGAAAACTTTTTTTGGTGTCTGGCCTCCTTTAATTAAAAAAAACAATTTTTGAAACAGCAATTTTTTTTGAGTTTGAAGTTTTGAGAATTTATGGGTGAGTGAGATCCTGAATTTCTGAACTTTTGAACTTTTGAAATTTTAGAACTTTGATGAATGCTGATTTAGCTGAAACTTTATGTTTAAAAATGTTTTTTTTTCAATTTTTGGAATTCATTTTTAAGATTATGCTTCGTCTAACAATAGTTAATTTTTTTGAACCCTTTAAATAATTTTTGAAACAGTTAAAAATATTTTTCAGYCTGTCTACCGTTCCTATCGCTCTGCTGAATGCAGTTGGGCTGCATTTTATATAAAACTGGTCAACATTTTTCGCTATTTTCTACCGATTCTTATGATTTTTTTAACTGATGTGAGTTTTGCAAGCGCATTTTTAATGGGTTACGGTAGTCCATTTTCAGGGTCTCTGGAAAAAGACAAACACATTTCGAGAGGTTCCAAGTGTTTCGGTGACTGGCGATTTTATAGTTTACGGTTACGGTAGGTTTTGAATTTGAAAATTTTAGAACTTCTGAGTTTTACAATTTCAGAATTCTCGAATCAAAGAATATCTGAATTTCTGAATTTTCGATTTTTCTAATGTTTGAATTAATTTTCAGGTCACCAAAAATCGATAATCTCCTCTTCATATCCAGTTTTAAATGCGGCAGCTTCTGCTGAGCAATTCTCCACTTCTCAAATTTTACACCATTTCGAAGAAGTGAATGATAATGAAAATGTAAGAAAATATACTCCCCAAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>369 143 133 92 92 74 40 27 25 5</canonical_bands>
                <polymorphic_bands>369 173 143 92 92 74 27 25 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGAACTTTGATGAATGCTGAT</pcr_primer_p1>
		<pcr_primer_p2>GTAGAAAATAGCGAAAAATGTTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTAGAACTTTGATGAATGCTGATTTAGCTGAAACTTTATGTTTAAAAATGTTTTTTTTTCAATTTTTGGAATTCATTTTTAAGATTATGCTTCGTCTAACAATAGTTAATTTTTTTGAACCCTTTAAATAATTTTTGAAACAGTTAAAAATATTTTTCAGCCTGTCTACCGTTCCTATCGCTCTGCTGAATGCAGTTGGGCTGCATTTTATATAAAACTGGTCAACATTTTTCGCTATTTTCTAC</canonical_amplicon>
		<polymorphic_amplicon>TTAGAACTTTGATGAATGCTGATTTAGCTGAAACTTTATGTTTAAAAATGTTTTTTTTTCAATTTTTGGAATTCATTTTTAAGATTATGCTTCGTCTAACAATAGTTAATTTTTTTGAACCCTTTAAATAATTTTTGAAACAGTTAAAAATATTTTTCAGYCTGTCTACCGTTCCTATCGCTCTGCTGAATGCAGTTGGGCTGCATTTTATATAAAACTGGTCAACATTTTTCGCTATTTTCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33414</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>58338</contig_pos>
        <strand>+</strand>
        <context>ACCGATTCTT[A/T]TGATTTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATTTTATATAAAACTGGTCAACATTTTTCGCTATTTTCTACCGATTCTT</left_flank>
        <right_flank>TGATTTTTTTAACTGATGTGAGTTTTGCAAGCGCATTTTTAATGGGTTAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTCAGGCGCCTTCGCGCCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCCGAGCTGCCTGTCATGAGTTCAACCCCTCATGGGGGTTCTCTATGCAAAAAATCAGGAAAACTTTTTTTGGTGTCTGGCCTCCTTTAATTAAAAAAAACAATTTTTGAAACAGCAATTTTTTTTGAGTTTGAAGTTTTGAGAATTTATGGGTGAGTGAGATCCTGAATTTCTGAACTTTTGAACTTTTGAAATTTTAGAACTTTGATGAATGCTGATTTAGCTGAAACTTTATGTTTAAAAATGTTTTTTTTTCAATTTTTGGAATTCATTTTTAAGATTATGCTTCGTCTAACAATAGTTAATTTTTTTGAACCCTTTAAATAATTTTTGAAACAGTTAAAAATATTTTTCAGCCTGTCTACCGTTCCTATCGCTCTGCTGAATGCAGTTGGGCTGCATTTTATATAAAACTGGTCAACATTTTTCGCTATTTTCTACCGATTCTTATGATTTTTTTAACTGATGTGAGTTTTGCAAGCGCATTTTTAATGGGTTACGGTAGTCCATTTTCAGGGTCTCTGGAAAAAGACAAACACATTTCGAGAGGTTCCAAGTGTTTCGGTGACTGGCGATTTTATAGTTTACGGTTACGGTAGGTTTTGAATTTGAAAATTTTAGAACTTCTGAGTTTTACAATTTCAGAATTCTCGAATCAAAGAATATCTGAATTTCTGAATTTTCGATTTTTCTAATGTTTGAATTAATTTTCAGGTCACCAAAAATCGATAATCTCCTCTTCATATCCAGTTTTAAATGCGGCAGCTTCTGCTGAGCAATTCTCCACTTCTCAAATTTTACACCATTTCGAAGAAGTGAATGATAATGAAAATGTAAGAAAATATACTCCCCAAGTTTAAGCTCAATTATCTCGATTTCTATAAGAGATATCAAAAATGTGTCAACTGATAAAATGTTTGTGATATTATGATAAACATTTTATCGGTTGA</canonical>
            <polymorphic>CGTCAGGCGCCTTCGCGCCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCCGAGCTGCCTGTCATGAGTTCAACCCCTCATGGGGGTTCTCTATGCAAAAAATCAGGAAAACTTTTTTTGGTGTCTGGCCTCCTTTAATTAAAAAAAACAATTTTTGAAACAGCAATTTTTTTTGAGTTTGAAGTTTTGAGAATTTATGGGTGAGTGAGATCCTGAATTTCTGAACTTTTGAACTTTTGAAATTTTAGAACTTTGATGAATGCTGATTTAGCTGAAACTTTATGTTTAAAAATGTTTTTTTTTCAATTTTTGGAATTCATTTTTAAGATTATGCTTCGTCTAACAATAGTTAATTTTTTTGAACCCTTTAAATAATTTTTGAAACAGTTAAAAATATTTTTCAGCCTGTCTACCGTTCCTATCGCTCTGCTGAATGCAGTTGGGCTGCATTTTATATAAAACTGGTCAACATTTTTCGCTATTTTCTACCGATTCTTWTGATTTTTTTAACTGATGTGAGTTTTGCAAGCGCATTTTTAATGGGTTACGGTAGTCCATTTTCAGGGTCTCTGGAAAAAGACAAACACATTTCGAGAGGTTCCAAGTGTTTCGGTGACTGGCGATTTTATAGTTTACGGTTACGGTAGGTTTTGAATTTGAAAATTTTAGAACTTCTGAGTTTTACAATTTCAGAATTCTCGAATCAAAGAATATCTGAATTTCTGAATTTTCGATTTTTCTAATGTTTGAATTAATTTTCAGGTCACCAAAAATCGATAATCTCCTCTTCATATCCAGTTTTAAATGCGGCAGCTTCTGCTGAGCAATTCTCCACTTCTCAAATTTTACACCATTTCGAAGAAGTGAATGATAATGAAAATGTAAGAAAATATACTCCCCAAGTTTAAGCTCAATTATCTCGATTTCTATAAGAGATATCAAAAATGTGTCAACTGATAAAATGTTTGTGATATTATGATAAACATTTTATCGGTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAAGATTATGCTTCGTCTAACAA</pcr_primer_p1>
		<pcr_primer_p2>AGAGACCCTGAAAATGGACTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTAAGATTATGCTTCGTCTAACAATAGTTAATTTTTTTGAACCCTTTAAATAATTTTTGAAACAGTTAAAAATATTTTTCAGCCTGTCTACCGTTCCTATCGCTCTGCTGAATGCAGTTGGGCTGCATTTTATATAAAACTGGTCAACATTTTTCGCTATTTTCTACCGATTCTTATGATTTTTTTAACTGATGTGAGTTTTGCAAGCGCATTTTTAATGGGTTACGGTAGTCCATTTTCAGGGTCTCT</canonical_amplicon>
		<polymorphic_amplicon>TTAAGATTATGCTTCGTCTAACAATAGTTAATTTTTTTGAACCCTTTAAATAATTTTTGAAACAGTTAAAAATATTTTTCAGCCTGTCTACCGTTCCTATCGCTCTGCTGAATGCAGTTGGGCTGCATTTTATATAAAACTGGTCAACATTTTTCGCTATTTTCTACCGATTCTTWTGATTTTTTTAACTGATGTGAGTTTTGCAAGCGCATTTTTAATGGGTTACGGTAGTCCATTTTCAGGGTCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33415</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>58384</contig_pos>
        <strand></strand>
        <context>TTTTTAATGG[G/A]RTACGGTAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCTTATGATTTTTTTAACTGATGTGAGTTTTGCAAGCGCATTTTTAATGG</left_flank>
        <right_flank>TTACGGTAGTCCATTTTCAGGGTCTCTGGAAAAAGACAAACACATTTCGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACCCCCGAGCTGCCTGTCATGAGTTCAACCCCTCATGGGGGTTCTCTATGCAAAAAATCAGGAAAACTTTTTTTGGTGTCTGGCCTCCTTTAATTAAAAAAAACAATTTTTGAAACAGCAATTTTTTTTGAGTTTGAAGTTTTGAGAATTTATGGGTGAGTGAGATCCTGAATTTCTGAACTTTTGAACTTTTGAAATTTTAGAACTTTGATGAATGCTGATTTAGCTGAAACTTTATGTTTAAAAATGTTTTTTTTTCAATTTTTGGAATTCATTTTTAAGATTATGCTTCGTCTAACAATAGTTAATTTTTTTGAACCCTTTAAATAATTTTTGAAACAGTTAAAAATATTTTTCAGCCTGTCTACCGTTCCTATCGCTCTGCTGAATGCAGTTGGGCTGCATTTTATATAAAACTGGTCAACATTTTTCGCTATTTTCTACCGATTCTTATGATTTTTTTAACTGATGTGAGTTTTGCAAGCGCATTTTTAATGGGTTACGGTAGTCCATTTTCAGGGTCTCTGGAAAAAGACAAACACATTTCGAGAGGTTCCAAGTGTTTCGGTGACTGGCGATTTTATAGTTTACGGTTACGGTAGGTTTTGAATTTGAAAATTTTAGAACTTCTGAGTTTTACAATTTCAGAATTCTCGAATCAAAGAATATCTGAATTTCTGAATTTTCGATTTTTCTAATGTTTGAATTAATTTTCAGGTCACCAAAAATCGATAATCTCCTCTTCATATCCAGTTTTAAATGCGGCAGCTTCTGCTGAGCAATTCTCCACTTCTCAAATTTTACACCATTTCGAAGAAGTGAATGATAATGAAAATGTAAGAAAATATACTCCCCAAGTTTAAGCTCAATTATCTCGATTTCTATAAGAGATATCAAAAATGTGTCAACTGATAAAATGTTTGTGATATTATGATAAACATTTTATCGGTTGACACTTTTTCGATATTTTTAAAAGTAACCGAGAGAAACTGGCTCAAA</canonical>
            <polymorphic>TACCCCCGAGCTGCCTGTCATGAGTTCAACCCCTCATGGGGGTTCTCTATGCAAAAAATCAGGAAAACTTTTTTTGGTGTCTGGCCTCCTTTAATTAAAAAAAACAATTTTTGAAACAGCAATTTTTTTTGAGTTTGAAGTTTTGAGAATTTATGGGTGAGTGAGATCCTGAATTTCTGAACTTTTGAACTTTTGAAATTTTAGAACTTTGATGAATGCTGATTTAGCTGAAACTTTATGTTTAAAAATGTTTTTTTTTCAATTTTTGGAATTCATTTTTAAGATTATGCTTCGTCTAACAATAGTTAATTTTTTTGAACCCTTTAAATAATTTTTGAAACAGTTAAAAATATTTTTCAGCCTGTCTACCGTTCCTATCGCTCTGCTGAATGCAGTTGGGCTGCATTTTATATAAAACTGGTCAACATTTTTCGCTATTTTCTACCGATTCTTATGATTTTTTTAACTGATGTGAGTTTTGCAAGCGCATTTTTAATGGRTTACGGTAGTCCATTTTCAGGGTCTCTGGAAAAAGACAAACACATTTCGAGAGGTTCCAAGTGTTTCGGTGACTGGCGATTTTATAGTTTACGGTTACGGTAGGTTTTGAATTTGAAAATTTTAGAACTTCTGAGTTTTACAATTTCAGAATTCTCGAATCAAAGAATATCTGAATTTCTGAATTTTCGATTTTTCTAATGTTTGAATTAATTTTCAGGTCACCAAAAATCGATAATCTCCTCTTCATATCCAGTTTTAAATGCGGCAGCTTCTGCTGAGCAATTCTCCACTTCTCAAATTTTACACCATTTCGAAGAAGTGAATGATAATGAAAATGTAAGAAAATATACTCCCCAAGTTTAAGCTCAATTATCTCGATTTCTATAAGAGATATCAAAAATGTGTCAACTGATAAAATGTTTGTGATATTATGATAAACATTTTATCGGTTGACACTTTTTCGATATTTTTAAAAGTAACCGAGAGAAACTGGCTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>499 258 125 69 25 24</canonical_bands>
                <polymorphic_bands>568 258 125 25 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCTTCGTCTAACAATAGTTAATTT</pcr_primer_p1>
		<pcr_primer_p2>CTCTCGAAATGTGTTTGTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>266</pcr_amplicon_size>
		<canonical_amplicon>TGCTTCGTCTAACAATAGTTAATTTTTTTGAACCCTTTAAATAATTTTTGAAACAGTTAAAAATATTTTTCAGCCTGTCTACCGTTCCTATCGCTCTGCTGAATGCAGTTGGGCTGCATTTTATATAAAACTGGTCAACATTTTTCGCTATTTTCTACCGATTCTTATGATTTTTTTAACTGATGTGAGTTTTGCAAGCGCATTTTTAATGGGTTACGGTAGTCCATTTTCAGGGTCTCTGGAAAAAGACAAACACATTTCGAGAG</canonical_amplicon>
		<polymorphic_amplicon>TGCTTCGTCTAACAATAGTTAATTTTTTTGAACCCTTTAAATAATTTTTGAAACAGTTAAAAATATTTTTCAGCCTGTCTACCGTTCCTATCGCTCTGCTGAATGCAGTTGGGCTGCATTTTATATAAAACTGGTCAACATTTTTCGCTATTTTCTACCGATTCTTATGATTTTTTTAACTGATGTGAGTTTTGCAAGCGCATTTTTAATGGRTTACGGTAGTCCATTTTCAGGGTCTCTGGAAAAAGACAAACACATTTCGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33416</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>58385</contig_pos>
        <strand>+</strand>
        <context>TTTTAATGGR[A/G]TACGGTAGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTATGATTTTTTTAACTGATGTGAGTTTTGCAAGCGCATTTTTAATGGG</left_flank>
        <right_flank>TACGGTAGTCCATTTTCAGGGTCTCTGGAAAAAGACAAACACATTTCGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCCCCGAGCTGCCTGTCATGAGTTCAACCCCTCATGGGGGTTCTCTATGCAAAAAATCAGGAAAACTTTTTTTGGTGTCTGGCCTCCTTTAATTAAAAAAAACAATTTTTGAAACAGCAATTTTTTTTGAGTTTGAAGTTTTGAGAATTTATGGGTGAGTGAGATCCTGAATTTCTGAACTTTTGAACTTTTGAAATTTTAGAACTTTGATGAATGCTGATTTAGCTGAAACTTTATGTTTAAAAATGTTTTTTTTTCAATTTTTGGAATTCATTTTTAAGATTATGCTTCGTCTAACAATAGTTAATTTTTTTGAACCCTTTAAATAATTTTTGAAACAGTTAAAAATATTTTTCAGCCTGTCTACCGTTCCTATCGCTCTGCTGAATGCAGTTGGGCTGCATTTTATATAAAACTGGTCAACATTTTTCGCTATTTTCTACCGATTCTTATGATTTTTTTAACTGATGTGAGTTTTGCAAGCGCATTTTTAATGGGTTACGGTAGTCCATTTTCAGGGTCTCTGGAAAAAGACAAACACATTTCGAGAGGTTCCAAGTGTTTCGGTGACTGGCGATTTTATAGTTTACGGTTACGGTAGGTTTTGAATTTGAAAATTTTAGAACTTCTGAGTTTTACAATTTCAGAATTCTCGAATCAAAGAATATCTGAATTTCTGAATTTTCGATTTTTCTAATGTTTGAATTAATTTTCAGGTCACCAAAAATCGATAATCTCCTCTTCATATCCAGTTTTAAATGCGGCAGCTTCTGCTGAGCAATTCTCCACTTCTCAAATTTTACACCATTTCGAAGAAGTGAATGATAATGAAAATGTAAGAAAATATACTCCCCAAGTTTAAGCTCAATTATCTCGATTTCTATAAGAGATATCAAAAATGTGTCAACTGATAAAATGTTTGTGATATTATGATAAACATTTTATCGGTTGACACTTTTTCGATATTTTTAAAAGTAACCGAGAGAAACTGGCTCAAAG</canonical>
            <polymorphic>ACCCCCGAGCTGCCTGTCATGAGTTCAACCCCTCATGGGGGTTCTCTATGCAAAAAATCAGGAAAACTTTTTTTGGTGTCTGGCCTCCTTTAATTAAAAAAAACAATTTTTGAAACAGCAATTTTTTTTGAGTTTGAAGTTTTGAGAATTTATGGGTGAGTGAGATCCTGAATTTCTGAACTTTTGAACTTTTGAAATTTTAGAACTTTGATGAATGCTGATTTAGCTGAAACTTTATGTTTAAAAATGTTTTTTTTTCAATTTTTGGAATTCATTTTTAAGATTATGCTTCGTCTAACAATAGTTAATTTTTTTGAACCCTTTAAATAATTTTTGAAACAGTTAAAAATATTTTTCAGCCTGTCTACCGTTCCTATCGCTCTGCTGAATGCAGTTGGGCTGCATTTTATATAAAACTGGTCAACATTTTTCGCTATTTTCTACCGATTCTTATGATTTTTTTAACTGATGTGAGTTTTGCAAGCGCATTTTTAATGGGRTACGGTAGTCCATTTTCAGGGTCTCTGGAAAAAGACAAACACATTTCGAGAGGTTCCAAGTGTTTCGGTGACTGGCGATTTTATAGTTTACGGTTACGGTAGGTTTTGAATTTGAAAATTTTAGAACTTCTGAGTTTTACAATTTCAGAATTCTCGAATCAAAGAATATCTGAATTTCTGAATTTTCGATTTTTCTAATGTTTGAATTAATTTTCAGGTCACCAAAAATCGATAATCTCCTCTTCATATCCAGTTTTAAATGCGGCAGCTTCTGCTGAGCAATTCTCCACTTCTCAAATTTTACACCATTTCGAAGAAGTGAATGATAATGAAAATGTAAGAAAATATACTCCCCAAGTTTAAGCTCAATTATCTCGATTTCTATAAGAGATATCAAAAATGTGTCAACTGATAAAATGTTTGTGATATTATGATAAACATTTTATCGGTTGACACTTTTTCGATATTTTTAAAAGTAACCGAGAGAAACTGGCTCAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>498 258 125 69 25 25</canonical_bands>
                <polymorphic_bands>567 258 125 25 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACATTTTTCGCTATTTTCTAC</pcr_primer_p1>
		<pcr_primer_p2>CAAATTCAAAACCTACCGTAAC</pcr_primer_p2>
		<pcr_amplicon_size>193</pcr_amplicon_size>
		<canonical_amplicon>CAACATTTTTCGCTATTTTCTACCGATTCTTATGATTTTTTTAACTGATGTGAGTTTTGCAAGCGCATTTTTAATGGGTTACGGTAGTCCATTTTCAGGGTCTCTGGAAAAAGACAAACACATTTCGAGAGGTTCCAAGTGTTTCGGTGACTGGCGATTTTATAGTTTACGGTTACGGTAGGTTTTGAATTTG</canonical_amplicon>
		<polymorphic_amplicon>CAACATTTTTCGCTATTTTCTACCGATTCTTATGATTTTTTTAACTGATGTGAGTTTTGCAAGCGCATTTTTAATGGGRTACGGTAGTCCATTTTCAGGGTCTCTGGAAAAAGACAAACACATTTCGAGAGGTTCCAAGTGTTTCGGTGACTGGCGATTTTATAGTTTACGGTTACGGTAGGTTTTGAATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33417</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>67995</contig_pos>
        <strand>+</strand>
        <context>CACCGCTTCY[C/T]GGTCAAATCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTAAAATTTCAGCCAAATTCAAATTTCCAGCCAAGCTCACCGCTTCC</left_flank>
        <right_flank>GGTCAAATCTGATGCTGTTCCTACTCGCAACCCTTCTCACTCTCCTTGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGTCTACCTGAAAATGAAAAATTAAAAAATTGAAATTTTTAGTCTTGGATTCGCACGAGCGCAGTCCCAAGCGAGACACTGCGCCAACAGACAAAAAATTCGTGGATGTAAAGCTGACGGCGTCGGTTTCAGATGACGATGAGGACGATGATGAGGATTTGGTCTTTGACAGAGTAAAAATTCCTTTAAAATCCAAAAAATAATAAATTTTTGCTTCCAGAACAACCTGTTATCCTCCAACAAACGACAGAATGCTTCACTAATTCGAGGGAGAGCTGATAATCAAACAATTCGATTTCTGATTCTTTTGATCCTTTTTCTAATTGCTGGACTTGTAAGCACTGCGACCAGCCTATCTATATGTTCCGTTCGACACGAGGTGATAGGATGTCTTTGGACTTGTATTGGAATGTTTTGTGGCGCTTGGGCTAGTGAGTTTTTCGAAAAAATTTAAAATTTCAGCCAAATTCAAATTTCCAGCCAAGCTCACCGCTTCCCGGTCAAATCTGATGCTGTTCCTACTCGCAACCCTTCTCACTCTCCTTGTCAATCTGTTTTTCGCTTTTAGCTTCTCATTTCTGTTCGCTCTCCGCGGATTTTTCGTCGGAGCCACCTTGTATGGTGGAGCTCTCGTTTGGTTCGCTTTCTGGAGGAAACAACCAAGGAAATTGCTTATTTTGCTGTTGGTATTTTCCGCTGGAGGTCTGCTAGCAATGTCTGTGAAAACTAGCGTGTTTTCCGGTGAGATTTGGTTAAAATTCGAGAAAATCGAGAAAAAAAACCGAATTTTTTATTTTTAGTTTTTTTCACTGATTTTTTCCAGGAACATTTTGAAAAACCTTTAAAAAAGCTCAAAAAAAGCATTTAAAATCGCGAAACATTGAAATTTGGCATTGAAAACTACCCGTAACGTCATTTTTCGGCTTTTACATCCTTTTAGAACTACAGTAATCCGAAATTTTTGAAAATTTGGCCATAAATTTATTGTTTCCAGATTC</canonical>
            <polymorphic>TGAGTCTACCTGAAAATGAAAAATTAAAAAATTGAAATTTTTAGTCTTGGATTCGCACGAGCGCAGTCCCAAGCGAGACACTGCGCCAACAGACAAAAAATTCGTGGATGTAAAGCTGACGGCGTCGGTTTCAGATGACGATGAGGACGATGATGAGGATTTGGTCTTTGACAGAGTAAAAATTCCTTTAAAATCCAAAAAATAATAAATTTTTGCTTCCAGAACAACCTGTTATCCTCCAACAAACGACAGAATGCTTCACTAATTCGAGGGAGAGCTGATAATCAAACAATTCGATTTCTGATTCTTTTGATCCTTTTTCTAATTGCTGGACTTGTAAGCACTGCGACCAGCCTATCTATATGTTCCGTTCGACACGAGGTGATAGGATGTCTTTGGACTTGTATTGGAATGTTTTGTGGCGCTTGGGCTAGTGAGTTTTTCGAAAAAATTTAAAATTTCAGCCAAATTCAAATTTCCAGCCAAGCTCACCGCTTCCYGGTCAAATCTGATGCTGTTCCTACTCGCAACCCTTCTCACTCTCCTTGTCAATCTGTTTTTCGCTTTTAGCTTCTCATTTCTGTTCGCTCTCCGCGGATTTTTCGTCGGAGCCACCTTGTATGGTGGAGCTCTCGTTTGGTTCGCTTTCTGGAGGAAACAACCAAGGAAATTGCTTATTTTGCTGTTGGTATTTTCCGCTGGAGGTCTGCTAGCAATGTCTGTGAAAACTAGCGTGTTTTCCGGTGAGATTTGGTTAAAATTCGAGAAAATCGAGAAAAAAAACCGAATTTTTTATTTTTAGTTTTTTTCACTGATTTTTTCCAGGAACATTTTGAAAAACCTTTAAAAAAGCTCAAAAAAAGCATTTAAAATCGCGAAACATTGAAATTTGGCATTGAAAACTACCCGTAACGTCATTTTTCGGCTTTTACATCCTTTTAGAACTACAGTAATCCGAAATTTTTGAAAATTTGGCCATAAATTTATTGTTTCCAGATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 259 242</canonical_bands>
                <polymorphic_bands>741 259</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTGATCCTTTTTCTAATTG</pcr_primer_p1>
		<pcr_primer_p2>AGATTGACAAGGAGAGTGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTGATCCTTTTTCTAATTGCTGGACTTGTAAGCACTGCGACCAGCCTATCTATATGTTCCGTTCGACACGAGGTGATAGGATGTCTTTGGACTTGTATTGGAATGTTTTGTGGCGCTTGGGCTAGTGAGTTTTTCGAAAAAATTTAAAATTTCAGCCAAATTCAAATTTCCAGCCAAGCTCACCGCTTCCCGGTCAAATCTGATGCTGTTCCTACTCGCAACCCTTCTCACTCTCCTTGTCAATCT</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTGATCCTTTTTCTAATTGCTGGACTTGTAAGCACTGCGACCAGCCTATCTATATGTTCCGTTCGACACGAGGTGATAGGATGTCTTTGGACTTGTATTGGAATGTTTTGTGGCGCTTGGGCTAGTGAGTTTTTCGAAAAAATTTAAAATTTCAGCCAAATTCAAATTTCCAGCCAAGCTCACCGCTTCCYGGTCAAATCTGATGCTGTTCCTACTCGCAACCCTTCTCACTCTCCTTGTCAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33418</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>68247</contig_pos>
        <strand>+</strand>
        <context>CGGTGAGATT[G/T]GGTTAAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAGGTCTGCTAGCAATGTCTGTGAAAACTAGCGTGTTTTCCGGTGAGATT</left_flank>
        <right_flank>GGTTAAAATTCGAGAAAATCGAGAAAAAAAACCGAATTTTTTATTTTTAG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGCTTCACTAATTCGAGGGAGAGCTGATAATCAAACAATTCGATTTCTGATTCTTTTGATCCTTTTTCTAATTGCTGGACTTGTAAGCACTGCGACCAGCCTATCTATATGTTCCGTTCGACACGAGGTGATAGGATGTCTTTGGACTTGTATTGGAATGTTTTGTGGCGCTTGGGCTAGTGAGTTTTTCGAAAAAATTTAAAATTTCAGCCAAATTCAAATTTCCAGCCAAGCTCACCGCTTCCCGGTCAAATCTGATGCTGTTCCTACTCGCAACCCTTCTCACTCTCCTTGTCAATCTGTTTTTCGCTTTTAGCTTCTCATTTCTGTTCGCTCTCCGCGGATTTTTCGTCGGAGCCACCTTGTATGGTGGAGCTCTCGTTTGGTTCGCTTTCTGGAGGAAACAACCAAGGAAATTGCTTATTTTGCTGTTGGTATTTTCCGCTGGAGGTCTGCTAGCAATGTCTGTGAAAACTAGCGTGTTTTCCGGTGAGATTTGGTTAAAATTCGAGAAAATCGAGAAAAAAAACCGAATTTTTTATTTTTAGTTTTTTTCACTGATTTTTTCCAGGAACATTTTGAAAAACCTTTAAAAAAGCTCAAAAAAAGCATTTAAAATCGCGAAACATTGAAATTTGGCATTGAAAACTACCCGTAACGTCATTTTTCGGCTTTTACATCCTTTTAGAACTACAGTAATCCGAAATTTTTGAAAATTTGGCCATAAATTTATTGTTTCCAGATTCTGAGAGTAATTTTCACAAATACCCTAATTTGATAAGATTTTCATATTGATTTCGGGTTACTGTAGCTTCTGGAAAAGTGCGCAAACACCGAATTGTCGAAAATCGAGATTTCGCGATTTTATACTAATGGACCATGGAAAAACTCGAATTTTGTGAATAAAGCTGTCACTGTATTTTTGGAACTACAGTAGTCCGAAAAATTCAAAAATTGAGATGCAAATAAATCGAGTAATTTTTGTTTTTATGTCAATT</canonical>
            <polymorphic>AATGCTTCACTAATTCGAGGGAGAGCTGATAATCAAACAATTCGATTTCTGATTCTTTTGATCCTTTTTCTAATTGCTGGACTTGTAAGCACTGCGACCAGCCTATCTATATGTTCCGTTCGACACGAGGTGATAGGATGTCTTTGGACTTGTATTGGAATGTTTTGTGGCGCTTGGGCTAGTGAGTTTTTCGAAAAAATTTAAAATTTCAGCCAAATTCAAATTTCCAGCCAAGCTCACCGCTTCCCGGTCAAATCTGATGCTGTTCCTACTCGCAACCCTTCTCACTCTCCTTGTCAATCTGTTTTTCGCTTTTAGCTTCTCATTTCTGTTCGCTCTCCGCGGATTTTTCGTCGGAGCCACCTTGTATGGTGGAGCTCTCGTTTGGTTCGCTTTCTGGAGGAAACAACCAAGGAAATTGCTTATTTTGCTGTTGGTATTTTCCGCTGGAGGTCTGCTAGCAATGTCTGTGAAAACTAGCGTGTTTTCCGGTGAGATTKGGTTAAAATTCGAGAAAATCGAGAAAAAAAACCGAATTTTTTATTTTTAGTTTTTTTCACTGATTTTTTCCAGGAACATTTTGAAAAACCTTTAAAAAAGCTCAAAAAAAGCATTTAAAATCGCGAAACATTGAAATTTGGCATTGAAAACTACCCGTAACGTCATTTTTCGGCTTTTACATCCTTTTAGAACTACAGTAATCCGAAATTTTTGAAAATTTGGCCATAAATTTATTGTTTCCAGATTCTGAGAGTAATTTTCACAAATACCCTAATTTGATAAGATTTTCATATTGATTTCGGGTTACTGTAGCTTCTGGAAAAGTGCGCAAACACCGAATTGTCGAAAATCGAGATTTCGCGATTTTATACTAATGGACCATGGAAAAACTCGAATTTTGTGAATAAAGCTGTCACTGTATTTTTGGAACTACAGTAGTCCGAAAAATTCAAAAATTGAGATGCAAATAAATCGAGTAATTTTTGTTTTTATGTCAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAACCAAGGAAATTGCTTAT</pcr_primer_p1>
		<pcr_primer_p2>TAAAGGTTTTTCAAAATGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>189</pcr_amplicon_size>
		<canonical_amplicon>ACAACCAAGGAAATTGCTTATTTTGCTGTTGGTATTTTCCGCTGGAGGTCTGCTAGCAATGTCTGTGAAAACTAGCGTGTTTTCCGGTGAGATTTGGTTAAAATTCGAGAAAATCGAGAAAAAAAACCGAATTTTTTATTTTTAGTTTTTTTCACTGATTTTTTCCAGGAACATTTTGAAAAACCTTTA</canonical_amplicon>
		<polymorphic_amplicon>ACAACCAAGGAAATTGCTTATTTTGCTGTTGGTATTTTCCGCTGGAGGTCTGCTAGCAATGTCTGTGAAAACTAGCGTGTTTTCCGGTGAGATTKGGTTAAAATTCGAGAAAATCGAGAAAAAAAACCGAATTTTTTATTTTTAGTTTTTTTCACTGATTTTTTCCAGGAACATTTTGAAAAACCTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33419</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>70131</contig_pos>
        <strand>+</strand>
        <context>ATTTTCGAAA[C/T]AAAAAAATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGACTTTTTTCTTGCAAAAAGTTCTATTTGATCAGATGGATTTTCGAAA</left_flank>
        <right_flank>AAAAAAATAAATTGAAAATCAATTTTGGAGGGAATTTTTACTTCAAAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTACGACTACTACAACCTCTACAACGACGACGACGACCACAGAAGCTCCAACAACGACTTCTACAACTACAACGACCACGACGACGACTACAGAAGCGCCAACGACGACTACAAAAGTGATTACTGTAGATGTGAAAACGAGGGATAGCAAAGAAGAAGCGAGACGGAGGAAGCAAGAGGATCCGTGAGTTTTTTTGGTTCGCAAACAGGTAGAAGTTCTAAAAAAATTATGTTGAAAAATCAACAAAAATCGAAAATGTGCCGAATTTCTTGACCAAAAAATTCCCAATTCGAAAAAAAAATCTGAAAATTTTTGGAAATTTTAAGAAAATGCGGGAAAAGTTGCTTAAAAATTCTGAAAGTCTACTGAAAATTCCTTCATTTTCGGTCTGAAAACTTCCTTTTTTTTTCCTATTTTTCTTTTTTTTTGATCCAAAACTCCAAAAAATTGACTTTTTTCTTGCAAAAAGTTCTATTTGATCAGATGGATTTTCGAAAAAAAAAAATAAATTGAAAATCAATTTTGGAGGGAATTTTTACTTCAAAATGTGTAGAAAAATATGTAAATTCATATAAATCTGAGAAATTTTTGAAAAATTGAGAAATACCGGAAAATTGCTACAAAAGTGACAAAAAAGTCAGATTTTTCGCAATTTTTTCTTCGACTTTTTGCGAAATTTCTAGACCTTTTTAGGGTTTTCAGCTATTTTCGAAGATTCCTTTTCGATTTTCTCCGAATTTTCGGTCTGAAATTTGACAGGATAATGTTCCCGAAAATTACTGTAGAAAACTTATTTCGCGCTTGTAGTTTTTTCTGGAAATGGAAATGTTTTCTACAGTAATCTACAGTAACTTTCCCGAACACCAGCCTGTCAACATTCAGACAAAAGAAACCGGAAAAATCGAGAAAGTTTTTTTGAAAATAGTTAAAAACCCTAAAAAGGTCAAGAAATTTTTCGAACATCGAAGCAAAATCAATATTTTTCTCAAAAACGTTTT</canonical>
            <polymorphic>TCTACGACTACTACAACCTCTACAACGACGACGACGACCACAGAAGCTCCAACAACGACTTCTACAACTACAACGACCACGACGACGACTACAGAAGCGCCAACGACGACTACAAAAGTGATTACTGTAGATGTGAAAACGAGGGATAGCAAAGAAGAAGCGAGACGGAGGAAGCAAGAGGATCCGTGAGTTTTTTTGGTTCGCAAACAGGTAGAAGTTCTAAAAAAATTATGTTGAAAAATCAACAAAAATCGAAAATGTGCCGAATTTCTTGACCAAAAAATTCCCAATTCGAAAAAAAAATCTGAAAATTTTTGGAAATTTTAAGAAAATGCGGGAAAAGTTGCTTAAAAATTCTGAAAGTCTACTGAAAATTCCTTCATTTTCGGTCTGAAAACTTCCTTTTTTTTTCCTATTTTTCTTTTTTTTTGATCCAAAACTCCAAAAAATTGACTTTTTTCTTGCAAAAAGTTCTATTTGATCAGATGGATTTTCGAAAYAAAAAAATAAATTGAAAATCAATTTTGGAGGGAATTTTTACTTCAAAATGTGTAGAAAAATATGTAAATTCATATAAATCTGAGAAATTTTTGAAAAATTGAGAAATACCGGAAAATTGCTACAAAAGTGACAAAAAAGTCAGATTTTTCGCAATTTTTTCTTCGACTTTTTGCGAAATTTCTAGACCTTTTTAGGGTTTTCAGCTATTTTCGAAGATTCCTTTTCGATTTTCTCCGAATTTTCGGTCTGAAATTTGACAGGATAATGTTCCCGAAAATTACTGTAGAAAACTTATTTCGCGCTTGTAGTTTTTTCTGGAAATGGAAATGTTTTCTACAGTAATCTACAGTAACTTTCCCGAACACCAGCCTGTCAACATTCAGACAAAAGAAACCGGAAAAATCGAGAAAGTTTTTTTGAAAATAGTTAAAAACCCTAAAAAGGTCAAGAAATTTTTCGAACATCGAAGCAAAATCAATATTTTTCTCAAAAACGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTCTGAAAACTTCCTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTCACTTTTGTAGCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGGTCTGAAAACTTCCTTTTTTTTTCCTATTTTTCTTTTTTTTTGATCCAAAACTCCAAAAAATTGACTTTTTTCTTGCAAAAAGTTCTATTTGATCAGATGGATTTTCGAAAAAAAAAAATAAATTGAAAATCAATTTTGGAGGGAATTTTTACTTCAAAATGTGTAGAAAAATATGTAAATTCATATAAATCTGAGAAATTTTTGAAAAATTGAGAAATACCGGAAAATTGCTACAAAAGTGACAAAA</canonical_amplicon>
		<polymorphic_amplicon>CGGTCTGAAAACTTCCTTTTTTTTTCCTATTTTTCTTTTTTTTTGATCCAAAACTCCAAAAAATTGACTTTTTTCTTGCAAAAAGTTCTATTTGATCAGATGGATTTTCGAAAYAAAAAAATAAATTGAAAATCAATTTTGGAGGGAATTTTTACTTCAAAATGTGTAGAAAAATATGTAAATTCATATAAATCTGAGAAATTTTTGAAAAATTGAGAAATACCGGAAAATTGCTACAAAAGTGACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33420</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>136501</contig_pos>
        <strand></strand>
        <context>gagctcaatt[A/G]tctcagtaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACATATGGAAGCTAATAGAAGGTAACTACCGTAAAATTCGAGCTCAATT</left_flank>
        <right_flank>TCTCAGTAATAATGTAGAAGATATCAAAAATGTGTTTATTGATAAAATGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACCTGTGCATGCTAAGGGAGCGCTCTACCACTGAGCTATACCCCCGCACAAGTTGAAGAACACGGGAGGGCGTAGAGAACAGGGGAGATGTTGCGCCTCACACGTTGAAGAGATCGCAACAAGGAAGGTGGAAAAGACACAATGATGTAGGAATTTGGAATTTTTAATTGCAAGAATTTTTTAATTACAGGAAGCAATCCCAGTTCTTCCTCAGTTACAAAAGAGTTGGGCAAACAAAACTGATGCACACTTTTCTTGTAACAAAAAGTTTTGGGTTGTTAAACAAATAGACAACTATTCCTCAGCGGTTTCTTTTGTTTTATCCGGTTAACCTCTTCTATTGCTCATTTTCCATTAGAAAATTTTGAGAGCTCAAAATTCTAACTCAAAATGAAAGAACCCAAAACGTTGCTCAATTTGTCTACAGAAGTTTTACAAGAAGTGTTAAAACATATGGAAGCTAATAGAAGGTAACTACCGTAAAATTCGAGCTCAATTATCTCAGTAATAATGTAGAAGATATCAAAAATGTGTTTATTGATAAAATGTCAAGCATTTTATAGAAAATATGTTATCAGTTGATTACTTTTTGATATTTTTCACAGAAGCCGAGGTAAAGCAGCTCAACGTTTGAAGTTAGAAAAATCGGCTCTAGTATGAGATGCTGGTTCTTAGAAAAAATTCCGATTCTTAAAAAATTATGGATCCATTTTTTTCTAGGTCATGACCCATTTTTCCAGGTCATGAACCATTTTTTCTAGGTCATGACCCAATTTCTCTTGGTCATAACCCAATTTTTCTAGGTTATCTATATTTACAGATTTTTGAAAATTTAAAAATCATAAATTTTCAGATTCGAGCTTGCCAAACGAATTCCTCTAATGAAGTCTCTTGAAAAGTCAGTACCTCTCAGAATCGACACTCTGGTTTTTGACGATTTGAGAATTCAAATCAACGACACTGAATACAAATTTGGAGTCTATAAGAAATATGACAAAA</canonical>
            <polymorphic>CACCTGTGCATGCTAAGGGAGCGCTCTACCACTGAGCTATACCCCCGCACAAGTTGAAGAACACGGGAGGGCGTAGAGAACAGGGGAGATGTTGCGCCTCACACGTTGAAGAGATCGCAACAAGGAAGGTGGAAAAGACACAATGATGTAGGAATTTGGAATTTTTAATTGCAAGAATTTTTTAATTACAGGAAGCAATCCCAGTTCTTCCTCAGTTACAAAAGAGTTGGGCAAACAAAACTGATGCACACTTTTCTTGTAACAAAAAGTTTTGGGTTGTTAAACAAATAGACAACTATTCCTCAGCGGTTTCTTTTGTTTTATCCGGTTAACCTCTTCTATTGCTCATTTTCCATTAGAAAATTTTGAGAGCTCAAAATTCTAACTCAAAATGAAAGAACCCAAAACGTTGCTCAATTTGTCTACAGAAGTTTTACAAGAAGTGTTAAAACATATGGAAGCTAATAGAAGGTAACTACCGTAAAATTCGAGCTCAATTRTCTCAGTAATAATGTAGAAGATATCAAAAATGTGTTTATTGATAAAATGTCAAGCATTTTATAGAAAATATGTTATCAGTTGATTACTTTTTGATATTTTTCACAGAAGCCGAGGTAAAGCAGCTCAACGTTTGAAGTTAGAAAAATCGGCTCTAGTATGAGATGCTGGTTCTTAGAAAAAATTCCGATTCTTAAAAAATTATGGATCCATTTTTTTCTAGGTCATGACCCATTTTTCCAGGTCATGAACCATTTTTTCTAGGTCATGACCCAATTTCTCTTGGTCATAACCCAATTTTTCTAGGTTATCTATATTTACAGATTTTTGAAAATTTAAAAATCATAAATTTTCAGATTCGAGCTTGCCAAACGAATTCCTCTAATGAAGTCTCTTGAAAAGTCAGTACCTCTCAGAATCGACACTCTGGTTTTTGACGATTTGAGAATTCAAATCAACGACACTGAATACAAATTTGGAGTCTATAAGAAATATGACAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTACAGAAGTTTTACAAGAAGTGTT</pcr_primer_p1>
		<pcr_primer_p2>AGCTCGAATCTGAAAATTTATG</pcr_primer_p2>
		<pcr_amplicon_size>442</pcr_amplicon_size>
		<canonical_amplicon>TCTACAGAAGTTTTACAAGAAGTGTTAAAACATATGGAAGCTAATAGAAGGTAACTACCGTAAAATTCGAGCTCAATTATCTCAGTAATAATGTAGAAGATATCAAAAATGTGTTTATTGATAAAATGTCAAGCATTTTATAGAAAATATGTTATCAGTTGATTACTTTTTGATATTTTTCACAGAAGCCGAGGTAAAGCAGCTCAACGTTTGAAGTTAGAAAAATCGGCTCTAGTATGAGATGCTGGTTCTTAGAAAAAATTCCGATTCTTAAAAAATTATGGATCCATTTTTTTCTAGGTCATGACCCATTTTTCCAGGTCATGAACCATTTTTTCTAGGTCATGACCCAATTTCTCTTGGTCATAACCCAATTTTTCTAGGTTATCTATATTTACAGATTTTTGAAAATTTAAAAATCATAAATTTTCAGATTCGAGCT</canonical_amplicon>
		<polymorphic_amplicon>TCTACAGAAGTTTTACAAGAAGTGTTAAAACATATGGAAGCTAATAGAAGGTAACTACCGTAAAATTCGAGCTCAATTRTCTCAGTAATAATGTAGAAGATATCAAAAATGTGTTTATTGATAAAATGTCAAGCATTTTATAGAAAATATGTTATCAGTTGATTACTTTTTGATATTTTTCACAGAAGCCGAGGTAAAGCAGCTCAACGTTTGAAGTTAGAAAAATCGGCTCTAGTATGAGATGCTGGTTCTTAGAAAAAATTCCGATTCTTAAAAAATTATGGATCCATTTTTTTCTAGGTCATGACCCATTTTTCCAGGTCATGAACCATTTTTTCTAGGTCATGACCCAATTTCTCTTGGTCATAACCCAATTTTTCTAGGTTATCTATATTTACAGATTTTTGAAAATTTAAAAATCATAAATTTTCAGATTCGAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33421</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>136512</contig_pos>
        <strand></strand>
        <context>tctcagtaat[A/T]atktagaaga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTAATAGAAGGTAACTACCGTAAAATTCGAGCTCAATTATCTCAGTAAT</left_flank>
        <right_flank>ATGTAGAAGATATCAAAAATGTGTTTATTGATAAAATGTCAAGCATTTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTAAGGGAGCGCTCTACCACTGAGCTATACCCCCGCACAAGTTGAAGAACACGGGAGGGCGTAGAGAACAGGGGAGATGTTGCGCCTCACACGTTGAAGAGATCGCAACAAGGAAGGTGGAAAAGACACAATGATGTAGGAATTTGGAATTTTTAATTGCAAGAATTTTTTAATTACAGGAAGCAATCCCAGTTCTTCCTCAGTTACAAAAGAGTTGGGCAAACAAAACTGATGCACACTTTTCTTGTAACAAAAAGTTTTGGGTTGTTAAACAAATAGACAACTATTCCTCAGCGGTTTCTTTTGTTTTATCCGGTTAACCTCTTCTATTGCTCATTTTCCATTAGAAAATTTTGAGAGCTCAAAATTCTAACTCAAAATGAAAGAACCCAAAACGTTGCTCAATTTGTCTACAGAAGTTTTACAAGAAGTGTTAAAACATATGGAAGCTAATAGAAGGTAACTACCGTAAAATTCGAGCTCAATTATCTCAGTAATAATGTAGAAGATATCAAAAATGTGTTTATTGATAAAATGTCAAGCATTTTATAGAAAATATGTTATCAGTTGATTACTTTTTGATATTTTTCACAGAAGCCGAGGTAAAGCAGCTCAACGTTTGAAGTTAGAAAAATCGGCTCTAGTATGAGATGCTGGTTCTTAGAAAAAATTCCGATTCTTAAAAAATTATGGATCCATTTTTTTCTAGGTCATGACCCATTTTTCCAGGTCATGAACCATTTTTTCTAGGTCATGACCCAATTTCTCTTGGTCATAACCCAATTTTTCTAGGTTATCTATATTTACAGATTTTTGAAAATTTAAAAATCATAAATTTTCAGATTCGAGCTTGCCAAACGAATTCCTCTAATGAAGTCTCTTGAAAAGTCAGTACCTCTCAGAATCGACACTCTGGTTTTTGACGATTTGAGAATTCAAATCAACGACACTGAATACAAATTTGGAGTCTATAAGAAATATGACAAAAAAGAAGAAACT</canonical>
            <polymorphic>GCTAAGGGAGCGCTCTACCACTGAGCTATACCCCCGCACAAGTTGAAGAACACGGGAGGGCGTAGAGAACAGGGGAGATGTTGCGCCTCACACGTTGAAGAGATCGCAACAAGGAAGGTGGAAAAGACACAATGATGTAGGAATTTGGAATTTTTAATTGCAAGAATTTTTTAATTACAGGAAGCAATCCCAGTTCTTCCTCAGTTACAAAAGAGTTGGGCAAACAAAACTGATGCACACTTTTCTTGTAACAAAAAGTTTTGGGTTGTTAAACAAATAGACAACTATTCCTCAGCGGTTTCTTTTGTTTTATCCGGTTAACCTCTTCTATTGCTCATTTTCCATTAGAAAATTTTGAGAGCTCAAAATTCTAACTCAAAATGAAAGAACCCAAAACGTTGCTCAATTTGTCTACAGAAGTTTTACAAGAAGTGTTAAAACATATGGAAGCTAATAGAAGGTAACTACCGTAAAATTCGAGCTCAATTATCTCAGTAATWATGTAGAAGATATCAAAAATGTGTTTATTGATAAAATGTCAAGCATTTTATAGAAAATATGTTATCAGTTGATTACTTTTTGATATTTTTCACAGAAGCCGAGGTAAAGCAGCTCAACGTTTGAAGTTAGAAAAATCGGCTCTAGTATGAGATGCTGGTTCTTAGAAAAAATTCCGATTCTTAAAAAATTATGGATCCATTTTTTTCTAGGTCATGACCCATTTTTCCAGGTCATGAACCATTTTTTCTAGGTCATGACCCAATTTCTCTTGGTCATAACCCAATTTTTCTAGGTTATCTATATTTACAGATTTTTGAAAATTTAAAAATCATAAATTTTCAGATTCGAGCTTGCCAAACGAATTCCTCTAATGAAGTCTCTTGAAAAGTCAGTACCTCTCAGAATCGACACTCTGGTTTTTGACGATTTGAGAATTCAAATCAACGACACTGAATACAAATTTGGAGTCTATAAGAAATATGACAAAAAAGAAGAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTACAGAAGTTTTACAAGAAGTGTT</pcr_primer_p1>
		<pcr_primer_p2>AGCTCGAATCTGAAAATTTATG</pcr_primer_p2>
		<pcr_amplicon_size>442</pcr_amplicon_size>
		<canonical_amplicon>TCTACAGAAGTTTTACAAGAAGTGTTAAAACATATGGAAGCTAATAGAAGGTAACTACCGTAAAATTCGAGCTCAATTATCTCAGTAATAATGTAGAAGATATCAAAAATGTGTTTATTGATAAAATGTCAAGCATTTTATAGAAAATATGTTATCAGTTGATTACTTTTTGATATTTTTCACAGAAGCCGAGGTAAAGCAGCTCAACGTTTGAAGTTAGAAAAATCGGCTCTAGTATGAGATGCTGGTTCTTAGAAAAAATTCCGATTCTTAAAAAATTATGGATCCATTTTTTTCTAGGTCATGACCCATTTTTCCAGGTCATGAACCATTTTTTCTAGGTCATGACCCAATTTCTCTTGGTCATAACCCAATTTTTCTAGGTTATCTATATTTACAGATTTTTGAAAATTTAAAAATCATAAATTTTCAGATTCGAGCT</canonical_amplicon>
		<polymorphic_amplicon>TCTACAGAAGTTTTACAAGAAGTGTTAAAACATATGGAAGCTAATAGAAGGTAACTACCGTAAAATTCGAGCTCAATTATCTCAGTAATWATGTAGAAGATATCAAAAATGTGTTTATTGATAAAATGTCAAGCATTTTATAGAAAATATGTTATCAGTTGATTACTTTTTGATATTTTTCACAGAAGCCGAGGTAAAGCAGCTCAACGTTTGAAGTTAGAAAAATCGGCTCTAGTATGAGATGCTGGTTCTTAGAAAAAATTCCGATTCTTAAAAAATTATGGATCCATTTTTTTCTAGGTCATGACCCATTTTTCCAGGTCATGAACCATTTTTTCTAGGTCATGACCCAATTTCTCTTGGTCATAACCCAATTTTTCTAGGTTATCTATATTTACAGATTTTTGAAAATTTAAAAATCATAAATTTTCAGATTCGAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33422</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>136515</contig_pos>
        <strand></strand>
        <context>cagtaatwat[G/T]tagaagatat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATAGAAGGTAACTACCGTAAAATTCGAGCTCAATTATCTCAGTAATAAT</left_flank>
        <right_flank>TAGAAGATATCAAAAATGTGTTTATTGATAAAATGTCAAGCATTTTATAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGGAGCGCTCTACCACTGAGCTATACCCCCGCACAAGTTGAAGAACACGGGAGGGCGTAGAGAACAGGGGAGATGTTGCGCCTCACACGTTGAAGAGATCGCAACAAGGAAGGTGGAAAAGACACAATGATGTAGGAATTTGGAATTTTTAATTGCAAGAATTTTTTAATTACAGGAAGCAATCCCAGTTCTTCCTCAGTTACAAAAGAGTTGGGCAAACAAAACTGATGCACACTTTTCTTGTAACAAAAAGTTTTGGGTTGTTAAACAAATAGACAACTATTCCTCAGCGGTTTCTTTTGTTTTATCCGGTTAACCTCTTCTATTGCTCATTTTCCATTAGAAAATTTTGAGAGCTCAAAATTCTAACTCAAAATGAAAGAACCCAAAACGTTGCTCAATTTGTCTACAGAAGTTTTACAAGAAGTGTTAAAACATATGGAAGCTAATAGAAGGTAACTACCGTAAAATTCGAGCTCAATTATCTCAGTAATAATGTAGAAGATATCAAAAATGTGTTTATTGATAAAATGTCAAGCATTTTATAGAAAATATGTTATCAGTTGATTACTTTTTGATATTTTTCACAGAAGCCGAGGTAAAGCAGCTCAACGTTTGAAGTTAGAAAAATCGGCTCTAGTATGAGATGCTGGTTCTTAGAAAAAATTCCGATTCTTAAAAAATTATGGATCCATTTTTTTCTAGGTCATGACCCATTTTTCCAGGTCATGAACCATTTTTTCTAGGTCATGACCCAATTTCTCTTGGTCATAACCCAATTTTTCTAGGTTATCTATATTTACAGATTTTTGAAAATTTAAAAATCATAAATTTTCAGATTCGAGCTTGCCAAACGAATTCCTCTAATGAAGTCTCTTGAAAAGTCAGTACCTCTCAGAATCGACACTCTGGTTTTTGACGATTTGAGAATTCAAATCAACGACACTGAATACAAATTTGGAGTCTATAAGAAATATGACAAAAAAGAAGAAACTCCA</canonical>
            <polymorphic>AAGGGAGCGCTCTACCACTGAGCTATACCCCCGCACAAGTTGAAGAACACGGGAGGGCGTAGAGAACAGGGGAGATGTTGCGCCTCACACGTTGAAGAGATCGCAACAAGGAAGGTGGAAAAGACACAATGATGTAGGAATTTGGAATTTTTAATTGCAAGAATTTTTTAATTACAGGAAGCAATCCCAGTTCTTCCTCAGTTACAAAAGAGTTGGGCAAACAAAACTGATGCACACTTTTCTTGTAACAAAAAGTTTTGGGTTGTTAAACAAATAGACAACTATTCCTCAGCGGTTTCTTTTGTTTTATCCGGTTAACCTCTTCTATTGCTCATTTTCCATTAGAAAATTTTGAGAGCTCAAAATTCTAACTCAAAATGAAAGAACCCAAAACGTTGCTCAATTTGTCTACAGAAGTTTTACAAGAAGTGTTAAAACATATGGAAGCTAATAGAAGGTAACTACCGTAAAATTCGAGCTCAATTATCTCAGTAATAATKTAGAAGATATCAAAAATGTGTTTATTGATAAAATGTCAAGCATTTTATAGAAAATATGTTATCAGTTGATTACTTTTTGATATTTTTCACAGAAGCCGAGGTAAAGCAGCTCAACGTTTGAAGTTAGAAAAATCGGCTCTAGTATGAGATGCTGGTTCTTAGAAAAAATTCCGATTCTTAAAAAATTATGGATCCATTTTTTTCTAGGTCATGACCCATTTTTCCAGGTCATGAACCATTTTTTCTAGGTCATGACCCAATTTCTCTTGGTCATAACCCAATTTTTCTAGGTTATCTATATTTACAGATTTTTGAAAATTTAAAAATCATAAATTTTCAGATTCGAGCTTGCCAAACGAATTCCTCTAATGAAGTCTCTTGAAAAGTCAGTACCTCTCAGAATCGACACTCTGGTTTTTGACGATTTGAGAATTCAAATCAACGACACTGAATACAAATTTGGAGTCTATAAGAAATATGACAAAAAAGAAGAAACTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTACAGAAGTTTTACAAGAAGTGTT</pcr_primer_p1>
		<pcr_primer_p2>AGCTCGAATCTGAAAATTTATG</pcr_primer_p2>
		<pcr_amplicon_size>442</pcr_amplicon_size>
		<canonical_amplicon>TCTACAGAAGTTTTACAAGAAGTGTTAAAACATATGGAAGCTAATAGAAGGTAACTACCGTAAAATTCGAGCTCAATTATCTCAGTAATAATGTAGAAGATATCAAAAATGTGTTTATTGATAAAATGTCAAGCATTTTATAGAAAATATGTTATCAGTTGATTACTTTTTGATATTTTTCACAGAAGCCGAGGTAAAGCAGCTCAACGTTTGAAGTTAGAAAAATCGGCTCTAGTATGAGATGCTGGTTCTTAGAAAAAATTCCGATTCTTAAAAAATTATGGATCCATTTTTTTCTAGGTCATGACCCATTTTTCCAGGTCATGAACCATTTTTTCTAGGTCATGACCCAATTTCTCTTGGTCATAACCCAATTTTTCTAGGTTATCTATATTTACAGATTTTTGAAAATTTAAAAATCATAAATTTTCAGATTCGAGCT</canonical_amplicon>
		<polymorphic_amplicon>TCTACAGAAGTTTTACAAGAAGTGTTAAAACATATGGAAGCTAATAGAAGGTAACTACCGTAAAATTCGAGCTCAATTATCTCAGTAATAATKTAGAAGATATCAAAAATGTGTTTATTGATAAAATGTCAAGCATTTTATAGAAAATATGTTATCAGTTGATTACTTTTTGATATTTTTCACAGAAGCCGAGGTAAAGCAGCTCAACGTTTGAAGTTAGAAAAATCGGCTCTAGTATGAGATGCTGGTTCTTAGAAAAAATTCCGATTCTTAAAAAATTATGGATCCATTTTTTTCTAGGTCATGACCCATTTTTCCAGGTCATGAACCATTTTTTCTAGGTCATGACCCAATTTCTCTTGGTCATAACCCAATTTTTCTAGGTTATCTATATTTACAGATTTTTGAAAATTTAAAAATCATAAATTTTCAGATTCGAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33423</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>136708</contig_pos>
        <strand></strand>
        <context>aaattatgga[T/C]ccattttttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TATGAGATGCTGGTTCTTAGAAAAAATTCCGATTCTTAAAAAATTATGGA</left_flank>
        <right_flank>CCATTTTTTTCTAGGTCATGACCCATTTTTCCAGGTCATGAACCATTTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCTCAGTTACAAAAGAGTTGGGCAAACAAAACTGATGCACACTTTTCTTGTAACAAAAAGTTTTGGGTTGTTAAACAAATAGACAACTATTCCTCAGCGGTTTCTTTTGTTTTATCCGGTTAACCTCTTCTATTGCTCATTTTCCATTAGAAAATTTTGAGAGCTCAAAATTCTAACTCAAAATGAAAGAACCCAAAACGTTGCTCAATTTGTCTACAGAAGTTTTACAAGAAGTGTTAAAACATATGGAAGCTAATAGAAGGTAACTACCGTAAAATTCGAGCTCAATTATCTCAGTAATAATGTAGAAGATATCAAAAATGTGTTTATTGATAAAATGTCAAGCATTTTATAGAAAATATGTTATCAGTTGATTACTTTTTGATATTTTTCACAGAAGCCGAGGTAAAGCAGCTCAACGTTTGAAGTTAGAAAAATCGGCTCTAGTATGAGATGCTGGTTCTTAGAAAAAATTCCGATTCTTAAAAAATTATGGATCCATTTTTTTCTAGGTCATGACCCATTTTTCCAGGTCATGAACCATTTTTTCTAGGTCATGACCCAATTTCTCTTGGTCATAACCCAATTTTTCTAGGTTATCTATATTTACAGATTTTTGAAAATTTAAAAATCATAAATTTTCAGATTCGAGCTTGCCAAACGAATTCCTCTAATGAAGTCTCTTGAAAAGTCAGTACCTCTCAGAATCGACACTCTGGTTTTTGACGATTTGAGAATTCAAATCAACGACACTGAATACAAATTTGGAGTCTATAAGAAATATGACAAAAAAGAAGAAACTCCAGAATTCGTTGAATTTGAAAATAGCCAAGGTGGACTTCCGAATAATATTGATGAATTTGGATTTAATGATTTTTCAAATGAGGTCTTTGTAGAAGAAGGAGATGTTGTTCTAACGGATTCTGAAGATTGGCAAGAATTTTGTGATGAGCAATTGGAGAGAAATGAAGGAGAACGAAGTAATATGAAAAGGATAT</canonical>
            <polymorphic>TTCCTCAGTTACAAAAGAGTTGGGCAAACAAAACTGATGCACACTTTTCTTGTAACAAAAAGTTTTGGGTTGTTAAACAAATAGACAACTATTCCTCAGCGGTTTCTTTTGTTTTATCCGGTTAACCTCTTCTATTGCTCATTTTCCATTAGAAAATTTTGAGAGCTCAAAATTCTAACTCAAAATGAAAGAACCCAAAACGTTGCTCAATTTGTCTACAGAAGTTTTACAAGAAGTGTTAAAACATATGGAAGCTAATAGAAGGTAACTACCGTAAAATTCGAGCTCAATTATCTCAGTAATAATGTAGAAGATATCAAAAATGTGTTTATTGATAAAATGTCAAGCATTTTATAGAAAATATGTTATCAGTTGATTACTTTTTGATATTTTTCACAGAAGCCGAGGTAAAGCAGCTCAACGTTTGAAGTTAGAAAAATCGGCTCTAGTATGAGATGCTGGTTCTTAGAAAAAATTCCGATTCTTAAAAAATTATGGAYCCATTTTTTTCTAGGTCATGACCCATTTTTCCAGGTCATGAACCATTTTTTCTAGGTCATGACCCAATTTCTCTTGGTCATAACCCAATTTTTCTAGGTTATCTATATTTACAGATTTTTGAAAATTTAAAAATCATAAATTTTCAGATTCGAGCTTGCCAAACGAATTCCTCTAATGAAGTCTCTTGAAAAGTCAGTACCTCTCAGAATCGACACTCTGGTTTTTGACGATTTGAGAATTCAAATCAACGACACTGAATACAAATTTGGAGTCTATAAGAAATATGACAAAAAAGAAGAAACTCCAGAATTCGTTGAATTTGAAAATAGCCAAGGTGGACTTCCGAATAATATTGATGAATTTGGATTTAATGATTTTTCAAATGAGGTCTTTGTAGAAGAAGGAGATGTTGTTCTAACGGATTCTGAAGATTGGCAAGAATTTTGTGATGAGCAATTGGAGAGAAATGAAGGAGAACGAAGTAATATGAAAAGGATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGATCC</site>
                <isoschizomers>
                    <enzyme>BamHI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTACAGAAGTTTTACAAGAAGTGTT</pcr_primer_p1>
		<pcr_primer_p2>AGCTCGAATCTGAAAATTTATG</pcr_primer_p2>
		<pcr_amplicon_size>442</pcr_amplicon_size>
		<canonical_amplicon>TCTACAGAAGTTTTACAAGAAGTGTTAAAACATATGGAAGCTAATAGAAGGTAACTACCGTAAAATTCGAGCTCAATTATCTCAGTAATAATGTAGAAGATATCAAAAATGTGTTTATTGATAAAATGTCAAGCATTTTATAGAAAATATGTTATCAGTTGATTACTTTTTGATATTTTTCACAGAAGCCGAGGTAAAGCAGCTCAACGTTTGAAGTTAGAAAAATCGGCTCTAGTATGAGATGCTGGTTCTTAGAAAAAATTCCGATTCTTAAAAAATTATGGATCCATTTTTTTCTAGGTCATGACCCATTTTTCCAGGTCATGAACCATTTTTTCTAGGTCATGACCCAATTTCTCTTGGTCATAACCCAATTTTTCTAGGTTATCTATATTTACAGATTTTTGAAAATTTAAAAATCATAAATTTTCAGATTCGAGCT</canonical_amplicon>
		<polymorphic_amplicon>TCTACAGAAGTTTTACAAGAAGTGTTAAAACATATGGAAGCTAATAGAAGGTAACTACCGTAAAATTCGAGCTCAATTATCTCAGTAATAATGTAGAAGATATCAAAAATGTGTTTATTGATAAAATGTCAAGCATTTTATAGAAAATATGTTATCAGTTGATTACTTTTTGATATTTTTCACAGAAGCCGAGGTAAAGCAGCTCAACGTTTGAAGTTAGAAAAATCGGCTCTAGTATGAGATGCTGGTTCTTAGAAAAAATTCCGATTCTTAAAAAATTATGGAYCCATTTTTTTCTAGGTCATGACCCATTTTTCCAGGTCATGAACCATTTTTTCTAGGTCATGACCCAATTTCTCTTGGTCATAACCCAATTTTTCTAGGTTATCTATATTTACAGATTTTTGAAAATTTAAAAATCATAAATTTTCAGATTCGAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33424</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>136815</contig_pos>
        <strand></strand>
        <context>ggttatctat[A/T]tttacagatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCATGACCCAATTTCTCTTGGTCATAACCCAATTTTTCTAGGTTATCTAT</left_flank>
        <right_flank>TTTACAGATTTTTGAAAATTTAAAAATCATAAATTTTCAGATTCGAGCTT</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGTTTTATCCGGTTAACCTCTTCTATTGCTCATTTTCCATTAGAAAATTTTGAGAGCTCAAAATTCTAACTCAAAATGAAAGAACCCAAAACGTTGCTCAATTTGTCTACAGAAGTTTTACAAGAAGTGTTAAAACATATGGAAGCTAATAGAAGGTAACTACCGTAAAATTCGAGCTCAATTATCTCAGTAATAATGTAGAAGATATCAAAAATGTGTTTATTGATAAAATGTCAAGCATTTTATAGAAAATATGTTATCAGTTGATTACTTTTTGATATTTTTCACAGAAGCCGAGGTAAAGCAGCTCAACGTTTGAAGTTAGAAAAATCGGCTCTAGTATGAGATGCTGGTTCTTAGAAAAAATTCCGATTCTTAAAAAATTATGGATCCATTTTTTTCTAGGTCATGACCCATTTTTCCAGGTCATGAACCATTTTTTCTAGGTCATGACCCAATTTCTCTTGGTCATAACCCAATTTTTCTAGGTTATCTATATTTACAGATTTTTGAAAATTTAAAAATCATAAATTTTCAGATTCGAGCTTGCCAAACGAATTCCTCTAATGAAGTCTCTTGAAAAGTCAGTACCTCTCAGAATCGACACTCTGGTTTTTGACGATTTGAGAATTCAAATCAACGACACTGAATACAAATTTGGAGTCTATAAGAAATATGACAAAAAAGAAGAAACTCCAGAATTCGTTGAATTTGAAAATAGCCAAGGTGGACTTCCGAATAATATTGATGAATTTGGATTTAATGATTTTTCAAATGAGGTCTTTGTAGAAGAAGGAGATGTTGTTCTAACGGATTCTGAAGATTGGCAAGAATTTTGTGATGAGCAATTGGAGAGAAATGAAGGAGAACGAAGTAATATGAAAAGGATATGGATTCAAAGGACGATTCAGGTGGGTGTAGCTAAAATAGGAAAACAGTAACCGACTGAATGAATTGGGAGGAAAAATGTAATGAAAAAAAGTGAGTGAAACAGAAAA</canonical>
            <polymorphic>TTTGTTTTATCCGGTTAACCTCTTCTATTGCTCATTTTCCATTAGAAAATTTTGAGAGCTCAAAATTCTAACTCAAAATGAAAGAACCCAAAACGTTGCTCAATTTGTCTACAGAAGTTTTACAAGAAGTGTTAAAACATATGGAAGCTAATAGAAGGTAACTACCGTAAAATTCGAGCTCAATTATCTCAGTAATAATGTAGAAGATATCAAAAATGTGTTTATTGATAAAATGTCAAGCATTTTATAGAAAATATGTTATCAGTTGATTACTTTTTGATATTTTTCACAGAAGCCGAGGTAAAGCAGCTCAACGTTTGAAGTTAGAAAAATCGGCTCTAGTATGAGATGCTGGTTCTTAGAAAAAATTCCGATTCTTAAAAAATTATGGATCCATTTTTTTCTAGGTCATGACCCATTTTTCCAGGTCATGAACCATTTTTTCTAGGTCATGACCCAATTTCTCTTGGTCATAACCCAATTTTTCTAGGTTATCTATWTTTACAGATTTTTGAAAATTTAAAAATCATAAATTTTCAGATTCGAGCTTGCCAAACGAATTCCTCTAATGAAGTCTCTTGAAAAGTCAGTACCTCTCAGAATCGACACTCTGGTTTTTGACGATTTGAGAATTCAAATCAACGACACTGAATACAAATTTGGAGTCTATAAGAAATATGACAAAAAAGAAGAAACTCCAGAATTCGTTGAATTTGAAAATAGCCAAGGTGGACTTCCGAATAATATTGATGAATTTGGATTTAATGATTTTTCAAATGAGGTCTTTGTAGAAGAAGGAGATGTTGTTCTAACGGATTCTGAAGATTGGCAAGAATTTTGTGATGAGCAATTGGAGAGAAATGAAGGAGAACGAAGTAATATGAAAAGGATATGGATTCAAAGGACGATTCAGGTGGGTGTAGCTAAAATAGGAAAACAGTAACCGACTGAATGAATTGGGAGGAAAAATGTAATGAAAAAAAGTGAGTGAAACAGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTACAGAAGTTTTACAAGAAGTGTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAGAGACTTCATTAGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>477</pcr_amplicon_size>
		<canonical_amplicon>TCTACAGAAGTTTTACAAGAAGTGTTAAAACATATGGAAGCTAATAGAAGGTAACTACCGTAAAATTCGAGCTCAATTATCTCAGTAATAATGTAGAAGATATCAAAAATGTGTTTATTGATAAAATGTCAAGCATTTTATAGAAAATATGTTATCAGTTGATTACTTTTTGATATTTTTCACAGAAGCCGAGGTAAAGCAGCTCAACGTTTGAAGTTAGAAAAATCGGCTCTAGTATGAGATGCTGGTTCTTAGAAAAAATTCCGATTCTTAAAAAATTATGGATCCATTTTTTTCTAGGTCATGACCCATTTTTCCAGGTCATGAACCATTTTTTCTAGGTCATGACCCAATTTCTCTTGGTCATAACCCAATTTTTCTAGGTTATCTATATTTACAGATTTTTGAAAATTTAAAAATCATAAATTTTCAGATTCGAGCTTGCCAAACGAATTCCTCTAATGAAGTCTCTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTACAGAAGTTTTACAAGAAGTGTTAAAACATATGGAAGCTAATAGAAGGTAACTACCGTAAAATTCGAGCTCAATTATCTCAGTAATAATGTAGAAGATATCAAAAATGTGTTTATTGATAAAATGTCAAGCATTTTATAGAAAATATGTTATCAGTTGATTACTTTTTGATATTTTTCACAGAAGCCGAGGTAAAGCAGCTCAACGTTTGAAGTTAGAAAAATCGGCTCTAGTATGAGATGCTGGTTCTTAGAAAAAATTCCGATTCTTAAAAAATTATGGATCCATTTTTTTCTAGGTCATGACCCATTTTTCCAGGTCATGAACCATTTTTTCTAGGTCATGACCCAATTTCTCTTGGTCATAACCCAATTTTTCTAGGTTATCTATWTTTACAGATTTTTGAAAATTTAAAAATCATAAATTTTCAGATTCGAGCTTGCCAAACGAATTCCTCTAATGAAGTCTCTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33425</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>136874</contig_pos>
        <strand></strand>
        <context>TTGCCAAACG[A/G]ATTCCTCTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTGAAAATTTAAAAATCATAAATTTTCAGATTCGAGCTTGCCAAACG</left_flank>
        <right_flank>ATTCCTCTAATGAAGTCTCTTGAAAAGTCAGTACCTCTCAGAATCGACAC</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAAATTCTAACTCAAAATGAAAGAACCCAAAACGTTGCTCAATTTGTCTACAGAAGTTTTACAAGAAGTGTTAAAACATATGGAAGCTAATAGAAGGTAACTACCGTAAAATTCGAGCTCAATTATCTCAGTAATAATGTAGAAGATATCAAAAATGTGTTTATTGATAAAATGTCAAGCATTTTATAGAAAATATGTTATCAGTTGATTACTTTTTGATATTTTTCACAGAAGCCGAGGTAAAGCAGCTCAACGTTTGAAGTTAGAAAAATCGGCTCTAGTATGAGATGCTGGTTCTTAGAAAAAATTCCGATTCTTAAAAAATTATGGATCCATTTTTTTCTAGGTCATGACCCATTTTTCCAGGTCATGAACCATTTTTTCTAGGTCATGACCCAATTTCTCTTGGTCATAACCCAATTTTTCTAGGTTATCTATATTTACAGATTTTTGAAAATTTAAAAATCATAAATTTTCAGATTCGAGCTTGCCAAACGAATTCCTCTAATGAAGTCTCTTGAAAAGTCAGTACCTCTCAGAATCGACACTCTGGTTTTTGACGATTTGAGAATTCAAATCAACGACACTGAATACAAATTTGGAGTCTATAAGAAATATGACAAAAAAGAAGAAACTCCAGAATTCGTTGAATTTGAAAATAGCCAAGGTGGACTTCCGAATAATATTGATGAATTTGGATTTAATGATTTTTCAAATGAGGTCTTTGTAGAAGAAGGAGATGTTGTTCTAACGGATTCTGAAGATTGGCAAGAATTTTGTGATGAGCAATTGGAGAGAAATGAAGGAGAACGAAGTAATATGAAAAGGATATGGATTCAAAGGACGATTCAGGTGGGTGTAGCTAAAATAGGAAAACAGTAACCGACTGAATGAATTGGGAGGAAAAATGTAATGAAAAAAAGTGAGTGAAACAGAAAAAAGTTTGATTCAGCGGGAAATCTGAAAATTCAAAATAATATTTTTCAGAAAATGAATAG</canonical>
            <polymorphic>TCAAAATTCTAACTCAAAATGAAAGAACCCAAAACGTTGCTCAATTTGTCTACAGAAGTTTTACAAGAAGTGTTAAAACATATGGAAGCTAATAGAAGGTAACTACCGTAAAATTCGAGCTCAATTATCTCAGTAATAATGTAGAAGATATCAAAAATGTGTTTATTGATAAAATGTCAAGCATTTTATAGAAAATATGTTATCAGTTGATTACTTTTTGATATTTTTCACAGAAGCCGAGGTAAAGCAGCTCAACGTTTGAAGTTAGAAAAATCGGCTCTAGTATGAGATGCTGGTTCTTAGAAAAAATTCCGATTCTTAAAAAATTATGGATCCATTTTTTTCTAGGTCATGACCCATTTTTCCAGGTCATGAACCATTTTTTCTAGGTCATGACCCAATTTCTCTTGGTCATAACCCAATTTTTCTAGGTTATCTATATTTACAGATTTTTGAAAATTTAAAAATCATAAATTTTCAGATTCGAGCTTGCCAAACGRATTCCTCTAATGAAGTCTCTTGAAAAGTCAGTACCTCTCAGAATCGACACTCTGGTTTTTGACGATTTGAGAATTCAAATCAACGACACTGAATACAAATTTGGAGTCTATAAGAAATATGACAAAAAAGAAGAAACTCCAGAATTCGTTGAATTTGAAAATAGCCAAGGTGGACTTCCGAATAATATTGATGAATTTGGATTTAATGATTTTTCAAATGAGGTCTTTGTAGAAGAAGGAGATGTTGTTCTAACGGATTCTGAAGATTGGCAAGAATTTTGTGATGAGCAATTGGAGAGAAATGAAGGAGAACGAAGTAATATGAAAAGGATATGGATTCAAAGGACGATTCAGGTGGGTGTAGCTAAAATAGGAAAACAGTAACCGACTGAATGAATTGGGAGGAAAAATGTAATGAAAAAAAGTGAGTGAAACAGAAAAAAGTTTGATTCAGCGGGAAATCTGAAAATTCAAAATAATATTTTTCAGAAAATGAATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>196 193 150 107 81 72 45 42 33 27 26 15 9 4</canonical_bands>
                <polymorphic_bands>196 193 150 107 99 81 45 42 33 26 15 9 4</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>499 358 72 71</canonical_bands>
                <polymorphic_bands>571 358 71</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>185 106 81 75 72 72 69 45 42 38 37 33 27 26 21 17 15 15 11 9 4</canonical_bands>
                <polymorphic_bands>185 106 99 81 75 72 69 45 42 38 37 33 26 21 17 15 15 11 9 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTACAGAAGTTTTACAAGAAGTGTT</pcr_primer_p1>
		<pcr_primer_p2>AGAGTGTCGATTCTGAGAGGTA</pcr_primer_p2>
		<pcr_amplicon_size>505</pcr_amplicon_size>
		<canonical_amplicon>TCTACAGAAGTTTTACAAGAAGTGTTAAAACATATGGAAGCTAATAGAAGGTAACTACCGTAAAATTCGAGCTCAATTATCTCAGTAATAATGTAGAAGATATCAAAAATGTGTTTATTGATAAAATGTCAAGCATTTTATAGAAAATATGTTATCAGTTGATTACTTTTTGATATTTTTCACAGAAGCCGAGGTAAAGCAGCTCAACGTTTGAAGTTAGAAAAATCGGCTCTAGTATGAGATGCTGGTTCTTAGAAAAAATTCCGATTCTTAAAAAATTATGGATCCATTTTTTTCTAGGTCATGACCCATTTTTCCAGGTCATGAACCATTTTTTCTAGGTCATGACCCAATTTCTCTTGGTCATAACCCAATTTTTCTAGGTTATCTATATTTACAGATTTTTGAAAATTTAAAAATCATAAATTTTCAGATTCGAGCTTGCCAAACGAATTCCTCTAATGAAGTCTCTTGAAAAGTCAGTACCTCTCAGAATCGACACTCT</canonical_amplicon>
		<polymorphic_amplicon>TCTACAGAAGTTTTACAAGAAGTGTTAAAACATATGGAAGCTAATAGAAGGTAACTACCGTAAAATTCGAGCTCAATTATCTCAGTAATAATGTAGAAGATATCAAAAATGTGTTTATTGATAAAATGTCAAGCATTTTATAGAAAATATGTTATCAGTTGATTACTTTTTGATATTTTTCACAGAAGCCGAGGTAAAGCAGCTCAACGTTTGAAGTTAGAAAAATCGGCTCTAGTATGAGATGCTGGTTCTTAGAAAAAATTCCGATTCTTAAAAAATTATGGATCCATTTTTTTCTAGGTCATGACCCATTTTTCCAGGTCATGAACCATTTTTTCTAGGTCATGACCCAATTTCTCTTGGTCATAACCCAATTTTTCTAGGTTATCTATATTTACAGATTTTTGAAAATTTAAAAATCATAAATTTTCAGATTCGAGCTTGCCAAACGRATTCCTCTAATGAAGTCTCTTGAAAAGTCAGTACCTCTCAGAATCGACACTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33426</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>137873</contig_pos>
        <strand>+</strand>
        <context>AGGATGTAGT[A/T]GAAGAGAGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATTCAGCTATGCAGTTCAAAATACGTATGAGAATCTGAAGGATGTAGT</left_flank>
        <right_flank>GAAGAGAGCAGTTATCCATTGGAATATGTGGAATTCAATGGAGCTGAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATTGAAGAACTTCGATATGTTTGAAGATGTAACTTGAGATTATCAAAAAGTTAAAGACTTTCGAGAAAAAGTTTTGTCAATTTTTCAAAAACTTTCAGGAACAAGAAAAACAAATCGCCCTTCTCCGATCTTCCGAACCCCAAAACCATTTTGAAATTCAAAACCTTCAACAGAAACTTCACAAATCCATCGCAGATCTCCTCGCATTCCAATACCGAGATTCTGGAGTCACTTCCTATATACCGTATACCCAACTGCTCATCACATCGACACGTGGCACCCATATCGAACGTTTTGAGTACAGTGGAAACATCCACGAGGCATTTAGGTGTCTGATTGCTCAGCTTTTTGGAAACCGTGGGCATCCGATAGAAGTTAAAAGATTTGAACCGAATTCAATGATCCTGAGGCTTCCCCTTGGAGTCAAATTTCAAATTGAAGGATTGAAATTCAGCTATGCAGTTCAAAATACGTATGAGAATCTGAAGGATGTAGTAGAAGAGAGCAGTTATCCATTGGAATATGTGGAATTCAATGGAGCTGAATTAGAAGGCGCGAATTTGAGAAATCAAGTGATAAGAGAGGCAAAAGAAGTTGTGATTTCTGGGAAATTGGAAAATGGAAAATGGACGCCTTACCTAGAGAAAATGGGAAATCCCAAGGTCCATGTAAAGGATGGATTTGAAAAGGAACCAATTGACGATTTGTATTTCATCATTTGTTCATGGATGAATAATGGAAACTTCGAGAAGAGAATGTGGACAGTTAAGTTGAATGATGAGCAATCTGGAGCGGAGATTTTGAAAAAGTTGGCAAACGATTTTTATGATGAGGATGTGAAAGAGAATCGGTGAGAAATATTTCATACCGAACATTTTTTTCCTGTTTTAAAATTTTTGGAAATGCTGAAGTTTCTTATTGTCGGAATTTGACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGTAGGTCAAACT</canonical>
            <polymorphic>GAAATTGAAGAACTTCGATATGTTTGAAGATGTAACTTGAGATTATCAAAAAGTTAAAGACTTTCGAGAAAAAGTTTTGTCAATTTTTCAAAAACTTTCAGGAACAAGAAAAACAAATCGCCCTTCTCCGATCTTCCGAACCCCAAAACCATTTTGAAATTCAAAACCTTCAACAGAAACTTCACAAATCCATCGCAGATCTCCTCGCATTCCAATACCGAGATTCTGGAGTCACTTCCTATATACCGTATACCCAACTGCTCATCACATCGACACGTGGCACCCATATCGAACGTTTTGAGTACAGTGGAAACATCCACGAGGCATTTAGGTGTCTGATTGCTCAGCTTTTTGGAAACCGTGGGCATCCGATAGAAGTTAAAAGATTTGAACCGAATTCAATGATCCTGAGGCTTCCCCTTGGAGTCAAATTTCAAATTGAAGGATTGAAATTCAGCTATGCAGTTCAAAATACGTATGAGAATCTGAAGGATGTAGTWGAAGAGAGCAGTTATCCATTGGAATATGTGGAATTCAATGGAGCTGAATTAGAAGGCGCGAATTTGAGAAATCAAGTGATAAGAGAGGCAAAAGAAGTTGTGATTTCTGGGAAATTGGAAAATGGAAAATGGACGCCTTACCTAGAGAAAATGGGAAATCCCAAGGTCCATGTAAAGGATGGATTTGAAAAGGAACCAATTGACGATTTGTATTTCATCATTTGTTCATGGATGAATAATGGAAACTTCGAGAAGAGAATGTGGACAGTTAAGTTGAATGATGAGCAATCTGGAGCGGAGATTTTGAAAAAGTTGGCAAACGATTTTTATGATGAGGATGTGAAAGAGAATCGGTGAGAAATATTTCATACCGAACATTTTTTTCCTGTTTTAAAATTTTTGGAAATGCTGAAGTTTCTTATTGTCGGAATTTGACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGTAGGTCAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCGATAGAAGTTAAAAGATTTG</pcr_primer_p1>
		<pcr_primer_p2>AATTTCCCAGAAATCACAACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCGATAGAAGTTAAAAGATTTGAACCGAATTCAATGATCCTGAGGCTTCCCCTTGGAGTCAAATTTCAAATTGAAGGATTGAAATTCAGCTATGCAGTTCAAAATACGTATGAGAATCTGAAGGATGTAGTAGAAGAGAGCAGTTATCCATTGGAATATGTGGAATTCAATGGAGCTGAATTAGAAGGCGCGAATTTGAGAAATCAAGTGATAAGAGAGGCAAAAGAAGTTGTGATTTCTGGGAAATT</canonical_amplicon>
		<polymorphic_amplicon>TCCGATAGAAGTTAAAAGATTTGAACCGAATTCAATGATCCTGAGGCTTCCCCTTGGAGTCAAATTTCAAATTGAAGGATTGAAATTCAGCTATGCAGTTCAAAATACGTATGAGAATCTGAAGGATGTAGTWGAAGAGAGCAGTTATCCATTGGAATATGTGGAATTCAATGGAGCTGAATTAGAAGGCGCGAATTTGAGAAATCAAGTGATAAGAGAGGCAAAAGAAGTTGTGATTTCTGGGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33427</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>138364</contig_pos>
        <strand></strand>
        <context>ATCATGCAGT[A/G]SGtcaaaytt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGTTATTGCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGT</left_flank>
        <right_flank>GGTCAAACTTGAGTCCATATCTCATTTCCTGTCTAGGATATTTATAAGTG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGTAGTAGAAGAGAGCAGTTATCCATTGGAATATGTGGAATTCAATGGAGCTGAATTAGAAGGCGCGAATTTGAGAAATCAAGTGATAAGAGAGGCAAAAGAAGTTGTGATTTCTGGGAAATTGGAAAATGGAAAATGGACGCCTTACCTAGAGAAAATGGGAAATCCCAAGGTCCATGTAAAGGATGGATTTGAAAAGGAACCAATTGACGATTTGTATTTCATCATTTGTTCATGGATGAATAATGGAAACTTCGAGAAGAGAATGTGGACAGTTAAGTTGAATGATGAGCAATCTGGAGCGGAGATTTTGAAAAAGTTGGCAAACGATTTTTATGATGAGGATGTGAAAGAGAATCGGTGAGAAATATTTCATACCGAACATTTTTTTCCTGTTTTAAAATTTTTGGAAATGCTGAAGTTTCTTATTGTCGGAATTTGACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGTAGGTCAAACTTGAGTCCATATCTCATTTCCTGTCTAGGATATTTATAAGTGGTCCACTTATAAAATGTTTACCATGATATCAAAAATATTTTGTCAGTTGACCAATTTTTGATATCTTTCACAGGCGCCGAGATAAACTGGCATAAAGATTTGAGCAATTTGTTTGAAAAATCGCTTCTGAAAACTATCTCTTTCGAATCTTCATATTTTTAATGGGGTTATGCACGTAATAAATTTGCAATAAAAATGGCAAATAAACACACAAAAATACTATGCAGATACGCACATGGGTTCAAACCAATGGGTCAGAAATCGCGCCCCAGTAAACGTGAGATTTTAGAAAAAATTCGCTGCTAAATTATGTGGCTGAGGATCAAACTTTTAAACGTTGCACGAAAAAAGTCACGCGTTGCAACTCGTTGATTAGAACTAATTAGGTCGAATCCACGTCAGCTTGGAAATTATTAAATTTCTTCTGGCCTAAAAGTTATTTGGGGCGCG</canonical>
            <polymorphic>GATGTAGTAGAAGAGAGCAGTTATCCATTGGAATATGTGGAATTCAATGGAGCTGAATTAGAAGGCGCGAATTTGAGAAATCAAGTGATAAGAGAGGCAAAAGAAGTTGTGATTTCTGGGAAATTGGAAAATGGAAAATGGACGCCTTACCTAGAGAAAATGGGAAATCCCAAGGTCCATGTAAAGGATGGATTTGAAAAGGAACCAATTGACGATTTGTATTTCATCATTTGTTCATGGATGAATAATGGAAACTTCGAGAAGAGAATGTGGACAGTTAAGTTGAATGATGAGCAATCTGGAGCGGAGATTTTGAAAAAGTTGGCAAACGATTTTTATGATGAGGATGTGAAAGAGAATCGGTGAGAAATATTTCATACCGAACATTTTTTTCCTGTTTTAAAATTTTTGGAAATGCTGAAGTTTCTTATTGTCGGAATTTGACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGTRGGTCAAACTTGAGTCCATATCTCATTTCCTGTCTAGGATATTTATAAGTGGTCCACTTATAAAATGTTTACCATGATATCAAAAATATTTTGTCAGTTGACCAATTTTTGATATCTTTCACAGGCGCCGAGATAAACTGGCATAAAGATTTGAGCAATTTGTTTGAAAAATCGCTTCTGAAAACTATCTCTTTCGAATCTTCATATTTTTAATGGGGTTATGCACGTAATAAATTTGCAATAAAAATGGCAAATAAACACACAAAAATACTATGCAGATACGCACATGGGTTCAAACCAATGGGTCAGAAATCGCGCCCCAGTAAACGTGAGATTTTAGAAAAAATTCGCTGCTAAATTATGTGGCTGAGGATCAAACTTTTAAACGTTGCACGAAAAAAGTCACGCGTTGCAACTCGTTGATTAGAACTAATTAGGTCGAATCCACGTCAGCTTGGAAATTATTAAATTTCTTCTGGCCTAAAAGTTATTTGGGGCGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTACAGTGTTATTGCTAAGCTC</pcr_primer_p1>
		<pcr_primer_p2>GAGATAGTTTTCAGAAGCGATTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGTAGGTCAAACTTGAGTCCATATCTCATTTCCTGTCTAGGATATTTATAAGTGGTCCACTTATAAAATGTTTACCATGATATCAAAAATATTTTGTCAGTTGACCAATTTTTGATATCTTTCACAGGCGCCGAGATAAACTGGCATAAAGATTTGAGCAATTTGTTTGAAAAATCGCTTCTGAAAACTATCTC</canonical_amplicon>
		<polymorphic_amplicon>GACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGTRGGTCAAACTTGAGTCCATATCTCATTTCCTGTCTAGGATATTTATAAGTGGTCCACTTATAAAATGTTTACCATGATATCAAAAATATTTTGTCAGTTGACCAATTTTTGATATCTTTCACAGGCGCCGAGATAAACTGGCATAAAGATTTGAGCAATTTGTTTGAAAAATCGCTTCTGAAAACTATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33428</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>138365</contig_pos>
        <strand></strand>
        <context>TCATGCAGTR[G/C]Gtcaaayttg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TGTTATTGCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGTA</left_flank>
        <right_flank>GTCAAACTTGAGTCCATATCTCATTTCCTGTCTAGGATATTTATAAGTGG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTAGTAGAAGAGAGCAGTTATCCATTGGAATATGTGGAATTCAATGGAGCTGAATTAGAAGGCGCGAATTTGAGAAATCAAGTGATAAGAGAGGCAAAAGAAGTTGTGATTTCTGGGAAATTGGAAAATGGAAAATGGACGCCTTACCTAGAGAAAATGGGAAATCCCAAGGTCCATGTAAAGGATGGATTTGAAAAGGAACCAATTGACGATTTGTATTTCATCATTTGTTCATGGATGAATAATGGAAACTTCGAGAAGAGAATGTGGACAGTTAAGTTGAATGATGAGCAATCTGGAGCGGAGATTTTGAAAAAGTTGGCAAACGATTTTTATGATGAGGATGTGAAAGAGAATCGGTGAGAAATATTTCATACCGAACATTTTTTTCCTGTTTTAAAATTTTTGGAAATGCTGAAGTTTCTTATTGTCGGAATTTGACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGTAGGTCAAACTTGAGTCCATATCTCATTTCCTGTCTAGGATATTTATAAGTGGTCCACTTATAAAATGTTTACCATGATATCAAAAATATTTTGTCAGTTGACCAATTTTTGATATCTTTCACAGGCGCCGAGATAAACTGGCATAAAGATTTGAGCAATTTGTTTGAAAAATCGCTTCTGAAAACTATCTCTTTCGAATCTTCATATTTTTAATGGGGTTATGCACGTAATAAATTTGCAATAAAAATGGCAAATAAACACACAAAAATACTATGCAGATACGCACATGGGTTCAAACCAATGGGTCAGAAATCGCGCCCCAGTAAACGTGAGATTTTAGAAAAAATTCGCTGCTAAATTATGTGGCTGAGGATCAAACTTTTAAACGTTGCACGAAAAAAGTCACGCGTTGCAACTCGTTGATTAGAACTAATTAGGTCGAATCCACGTCAGCTTGGAAATTATTAAATTTCTTCTGGCCTAAAAGTTATTTGGGGCGCGT</canonical>
            <polymorphic>ATGTAGTAGAAGAGAGCAGTTATCCATTGGAATATGTGGAATTCAATGGAGCTGAATTAGAAGGCGCGAATTTGAGAAATCAAGTGATAAGAGAGGCAAAAGAAGTTGTGATTTCTGGGAAATTGGAAAATGGAAAATGGACGCCTTACCTAGAGAAAATGGGAAATCCCAAGGTCCATGTAAAGGATGGATTTGAAAAGGAACCAATTGACGATTTGTATTTCATCATTTGTTCATGGATGAATAATGGAAACTTCGAGAAGAGAATGTGGACAGTTAAGTTGAATGATGAGCAATCTGGAGCGGAGATTTTGAAAAAGTTGGCAAACGATTTTTATGATGAGGATGTGAAAGAGAATCGGTGAGAAATATTTCATACCGAACATTTTTTTCCTGTTTTAAAATTTTTGGAAATGCTGAAGTTTCTTATTGTCGGAATTTGACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGTASGTCAAACTTGAGTCCATATCTCATTTCCTGTCTAGGATATTTATAAGTGGTCCACTTATAAAATGTTTACCATGATATCAAAAATATTTTGTCAGTTGACCAATTTTTGATATCTTTCACAGGCGCCGAGATAAACTGGCATAAAGATTTGAGCAATTTGTTTGAAAAATCGCTTCTGAAAACTATCTCTTTCGAATCTTCATATTTTTAATGGGGTTATGCACGTAATAAATTTGCAATAAAAATGGCAAATAAACACACAAAAATACTATGCAGATACGCACATGGGTTCAAACCAATGGGTCAGAAATCGCGCCCCAGTAAACGTGAGATTTTAGAAAAAATTCGCTGCTAAATTATGTGGCTGAGGATCAAACTTTTAAACGTTGCACGAAAAAAGTCACGCGTTGCAACTCGTTGATTAGAACTAATTAGGTCGAATCCACGTCAGCTTGGAAATTATTAAATTTCTTCTGGCCTAAAAGTTATTTGGGGCGCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTACAGTGTTATTGCTAAGCTC</pcr_primer_p1>
		<pcr_primer_p2>GAGATAGTTTTCAGAAGCGATTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGTAGGTCAAACTTGAGTCCATATCTCATTTCCTGTCTAGGATATTTATAAGTGGTCCACTTATAAAATGTTTACCATGATATCAAAAATATTTTGTCAGTTGACCAATTTTTGATATCTTTCACAGGCGCCGAGATAAACTGGCATAAAGATTTGAGCAATTTGTTTGAAAAATCGCTTCTGAAAACTATCTC</canonical_amplicon>
		<polymorphic_amplicon>GACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGTASGTCAAACTTGAGTCCATATCTCATTTCCTGTCTAGGATATTTATAAGTGGTCCACTTATAAAATGTTTACCATGATATCAAAAATATTTTGTCAGTTGACCAATTTTTGATATCTTTCACAGGCGCCGAGATAAACTGGCATAAAGATTTGAGCAATTTGTTTGAAAAATCGCTTCTGAAAACTATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33429</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>138372</contig_pos>
        <strand></strand>
        <context>GTRSGtcaaa[C/T]ttgagtccat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGTAGGTCAAA</left_flank>
        <right_flank>TTGAGTCCATATCTCATTTCCTGTCTAGGATATTTATAAGTGGTCCACTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAGAGAGCAGTTATCCATTGGAATATGTGGAATTCAATGGAGCTGAATTAGAAGGCGCGAATTTGAGAAATCAAGTGATAAGAGAGGCAAAAGAAGTTGTGATTTCTGGGAAATTGGAAAATGGAAAATGGACGCCTTACCTAGAGAAAATGGGAAATCCCAAGGTCCATGTAAAGGATGGATTTGAAAAGGAACCAATTGACGATTTGTATTTCATCATTTGTTCATGGATGAATAATGGAAACTTCGAGAAGAGAATGTGGACAGTTAAGTTGAATGATGAGCAATCTGGAGCGGAGATTTTGAAAAAGTTGGCAAACGATTTTTATGATGAGGATGTGAAAGAGAATCGGTGAGAAATATTTCATACCGAACATTTTTTTCCTGTTTTAAAATTTTTGGAAATGCTGAAGTTTCTTATTGTCGGAATTTGACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGTAGGTCAAACTTGAGTCCATATCTCATTTCCTGTCTAGGATATTTATAAGTGGTCCACTTATAAAATGTTTACCATGATATCAAAAATATTTTGTCAGTTGACCAATTTTTGATATCTTTCACAGGCGCCGAGATAAACTGGCATAAAGATTTGAGCAATTTGTTTGAAAAATCGCTTCTGAAAACTATCTCTTTCGAATCTTCATATTTTTAATGGGGTTATGCACGTAATAAATTTGCAATAAAAATGGCAAATAAACACACAAAAATACTATGCAGATACGCACATGGGTTCAAACCAATGGGTCAGAAATCGCGCCCCAGTAAACGTGAGATTTTAGAAAAAATTCGCTGCTAAATTATGTGGCTGAGGATCAAACTTTTAAACGTTGCACGAAAAAAGTCACGCGTTGCAACTCGTTGATTAGAACTAATTAGGTCGAATCCACGTCAGCTTGGAAATTATTAAATTTCTTCTGGCCTAAAAGTTATTTGGGGCGCGTTTTTTGA</canonical>
            <polymorphic>AGAAGAGAGCAGTTATCCATTGGAATATGTGGAATTCAATGGAGCTGAATTAGAAGGCGCGAATTTGAGAAATCAAGTGATAAGAGAGGCAAAAGAAGTTGTGATTTCTGGGAAATTGGAAAATGGAAAATGGACGCCTTACCTAGAGAAAATGGGAAATCCCAAGGTCCATGTAAAGGATGGATTTGAAAAGGAACCAATTGACGATTTGTATTTCATCATTTGTTCATGGATGAATAATGGAAACTTCGAGAAGAGAATGTGGACAGTTAAGTTGAATGATGAGCAATCTGGAGCGGAGATTTTGAAAAAGTTGGCAAACGATTTTTATGATGAGGATGTGAAAGAGAATCGGTGAGAAATATTTCATACCGAACATTTTTTTCCTGTTTTAAAATTTTTGGAAATGCTGAAGTTTCTTATTGTCGGAATTTGACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGTAGGTCAAAYTTGAGTCCATATCTCATTTCCTGTCTAGGATATTTATAAGTGGTCCACTTATAAAATGTTTACCATGATATCAAAAATATTTTGTCAGTTGACCAATTTTTGATATCTTTCACAGGCGCCGAGATAAACTGGCATAAAGATTTGAGCAATTTGTTTGAAAAATCGCTTCTGAAAACTATCTCTTTCGAATCTTCATATTTTTAATGGGGTTATGCACGTAATAAATTTGCAATAAAAATGGCAAATAAACACACAAAAATACTATGCAGATACGCACATGGGTTCAAACCAATGGGTCAGAAATCGCGCCCCAGTAAACGTGAGATTTTAGAAAAAATTCGCTGCTAAATTATGTGGCTGAGGATCAAACTTTTAAACGTTGCACGAAAAAAGTCACGCGTTGCAACTCGTTGATTAGAACTAATTAGGTCGAATCCACGTCAGCTTGGAAATTATTAAATTTCTTCTGGCCTAAAAGTTATTTGGGGCGCGTTTTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTACAGTGTTATTGCTAAGCTC</pcr_primer_p1>
		<pcr_primer_p2>GAGATAGTTTTCAGAAGCGATTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGTAGGTCAAACTTGAGTCCATATCTCATTTCCTGTCTAGGATATTTATAAGTGGTCCACTTATAAAATGTTTACCATGATATCAAAAATATTTTGTCAGTTGACCAATTTTTGATATCTTTCACAGGCGCCGAGATAAACTGGCATAAAGATTTGAGCAATTTGTTTGAAAAATCGCTTCTGAAAACTATCTC</canonical_amplicon>
		<polymorphic_amplicon>GACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGTAGGTCAAAYTTGAGTCCATATCTCATTTCCTGTCTAGGATATTTATAAGTGGTCCACTTATAAAATGTTTACCATGATATCAAAAATATTTTGTCAGTTGACCAATTTTTGATATCTTTCACAGGCGCCGAGATAAACTGGCATAAAGATTTGAGCAATTTGTTTGAAAAATCGCTTCTGAAAACTATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33430</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>138400</contig_pos>
        <strand></strand>
        <context>ttcctgtcta[G/A]gatatttata</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGCAATCATGCAGTAGGTCAAACTTGAGTCCATATCTCATTTCCTGTCTA</left_flank>
        <right_flank>GATATTTATAAGTGGTCCACTTATAAAATGTTTACCATGATATCAAAAAT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGGAATTCAATGGAGCTGAATTAGAAGGCGCGAATTTGAGAAATCAAGTGATAAGAGAGGCAAAAGAAGTTGTGATTTCTGGGAAATTGGAAAATGGAAAATGGACGCCTTACCTAGAGAAAATGGGAAATCCCAAGGTCCATGTAAAGGATGGATTTGAAAAGGAACCAATTGACGATTTGTATTTCATCATTTGTTCATGGATGAATAATGGAAACTTCGAGAAGAGAATGTGGACAGTTAAGTTGAATGATGAGCAATCTGGAGCGGAGATTTTGAAAAAGTTGGCAAACGATTTTTATGATGAGGATGTGAAAGAGAATCGGTGAGAAATATTTCATACCGAACATTTTTTTCCTGTTTTAAAATTTTTGGAAATGCTGAAGTTTCTTATTGTCGGAATTTGACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGTAGGTCAAACTTGAGTCCATATCTCATTTCCTGTCTAGGATATTTATAAGTGGTCCACTTATAAAATGTTTACCATGATATCAAAAATATTTTGTCAGTTGACCAATTTTTGATATCTTTCACAGGCGCCGAGATAAACTGGCATAAAGATTTGAGCAATTTGTTTGAAAAATCGCTTCTGAAAACTATCTCTTTCGAATCTTCATATTTTTAATGGGGTTATGCACGTAATAAATTTGCAATAAAAATGGCAAATAAACACACAAAAATACTATGCAGATACGCACATGGGTTCAAACCAATGGGTCAGAAATCGCGCCCCAGTAAACGTGAGATTTTAGAAAAAATTCGCTGCTAAATTATGTGGCTGAGGATCAAACTTTTAAACGTTGCACGAAAAAAGTCACGCGTTGCAACTCGTTGATTAGAACTAATTAGGTCGAATCCACGTCAGCTTGGAAATTATTAAATTTCTTCTGGCCTAAAAGTTATTTGGGGCGCGTTTTTTGACCCGTTGTGGATACGCAAATAAATTAAT</canonical>
            <polymorphic>GTGGAATTCAATGGAGCTGAATTAGAAGGCGCGAATTTGAGAAATCAAGTGATAAGAGAGGCAAAAGAAGTTGTGATTTCTGGGAAATTGGAAAATGGAAAATGGACGCCTTACCTAGAGAAAATGGGAAATCCCAAGGTCCATGTAAAGGATGGATTTGAAAAGGAACCAATTGACGATTTGTATTTCATCATTTGTTCATGGATGAATAATGGAAACTTCGAGAAGAGAATGTGGACAGTTAAGTTGAATGATGAGCAATCTGGAGCGGAGATTTTGAAAAAGTTGGCAAACGATTTTTATGATGAGGATGTGAAAGAGAATCGGTGAGAAATATTTCATACCGAACATTTTTTTCCTGTTTTAAAATTTTTGGAAATGCTGAAGTTTCTTATTGTCGGAATTTGACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGTAGGTCAAACTTGAGTCCATATCTCATTTCCTGTCTARGATATTTATAAGTGGTCCACTTATAAAATGTTTACCATGATATCAAAAATATTTTGTCAGTTGACCAATTTTTGATATCTTTCACAGGCGCCGAGATAAACTGGCATAAAGATTTGAGCAATTTGTTTGAAAAATCGCTTCTGAAAACTATCTCTTTCGAATCTTCATATTTTTAATGGGGTTATGCACGTAATAAATTTGCAATAAAAATGGCAAATAAACACACAAAAATACTATGCAGATACGCACATGGGTTCAAACCAATGGGTCAGAAATCGCGCCCCAGTAAACGTGAGATTTTAGAAAAAATTCGCTGCTAAATTATGTGGCTGAGGATCAAACTTTTAAACGTTGCACGAAAAAAGTCACGCGTTGCAACTCGTTGATTAGAACTAATTAGGTCGAATCCACGTCAGCTTGGAAATTATTAAATTTCTTCTGGCCTAAAAGTTATTTGGGGCGCGTTTTTTGACCCGTTGTGGATACGCAAATAAATTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 382 115</canonical_bands>
                <polymorphic_bands>885 115</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTACAGTGTTATTGCTAAGCTC</pcr_primer_p1>
		<pcr_primer_p2>GAGATAGTTTTCAGAAGCGATTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGTAGGTCAAACTTGAGTCCATATCTCATTTCCTGTCTAGGATATTTATAAGTGGTCCACTTATAAAATGTTTACCATGATATCAAAAATATTTTGTCAGTTGACCAATTTTTGATATCTTTCACAGGCGCCGAGATAAACTGGCATAAAGATTTGAGCAATTTGTTTGAAAAATCGCTTCTGAAAACTATCTC</canonical_amplicon>
		<polymorphic_amplicon>GACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGTAGGTCAAACTTGAGTCCATATCTCATTTCCTGTCTARGATATTTATAAGTGGTCCACTTATAAAATGTTTACCATGATATCAAAAATATTTTGTCAGTTGACCAATTTTTGATATCTTTCACAGGCGCCGAGATAAACTGGCATAAAGATTTGAGCAATTTGTTTGAAAAATCGCTTCTGAAAACTATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33431</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>138418</contig_pos>
        <strand></strand>
        <context>ataagtggtc[C/T]acttataaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAACTTGAGTCCATATCTCATTTCCTGTCTAGGATATTTATAAGTGGTC</left_flank>
        <right_flank>ACTTATAAAATGTTTACCATGATATCAAAAATATTTTGTCAGTTGACCAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTAGAAGGCGCGAATTTGAGAAATCAAGTGATAAGAGAGGCAAAAGAAGTTGTGATTTCTGGGAAATTGGAAAATGGAAAATGGACGCCTTACCTAGAGAAAATGGGAAATCCCAAGGTCCATGTAAAGGATGGATTTGAAAAGGAACCAATTGACGATTTGTATTTCATCATTTGTTCATGGATGAATAATGGAAACTTCGAGAAGAGAATGTGGACAGTTAAGTTGAATGATGAGCAATCTGGAGCGGAGATTTTGAAAAAGTTGGCAAACGATTTTTATGATGAGGATGTGAAAGAGAATCGGTGAGAAATATTTCATACCGAACATTTTTTTCCTGTTTTAAAATTTTTGGAAATGCTGAAGTTTCTTATTGTCGGAATTTGACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGTAGGTCAAACTTGAGTCCATATCTCATTTCCTGTCTAGGATATTTATAAGTGGTCCACTTATAAAATGTTTACCATGATATCAAAAATATTTTGTCAGTTGACCAATTTTTGATATCTTTCACAGGCGCCGAGATAAACTGGCATAAAGATTTGAGCAATTTGTTTGAAAAATCGCTTCTGAAAACTATCTCTTTCGAATCTTCATATTTTTAATGGGGTTATGCACGTAATAAATTTGCAATAAAAATGGCAAATAAACACACAAAAATACTATGCAGATACGCACATGGGTTCAAACCAATGGGTCAGAAATCGCGCCCCAGTAAACGTGAGATTTTAGAAAAAATTCGCTGCTAAATTATGTGGCTGAGGATCAAACTTTTAAACGTTGCACGAAAAAAGTCACGCGTTGCAACTCGTTGATTAGAACTAATTAGGTCGAATCCACGTCAGCTTGGAAATTATTAAATTTCTTCTGGCCTAAAAGTTATTTGGGGCGCGTTTTTTGACCCGTTGTGGATACGCAAATAAATTAATTTATTTGCATTCAAAAAT</canonical>
            <polymorphic>GAATTAGAAGGCGCGAATTTGAGAAATCAAGTGATAAGAGAGGCAAAAGAAGTTGTGATTTCTGGGAAATTGGAAAATGGAAAATGGACGCCTTACCTAGAGAAAATGGGAAATCCCAAGGTCCATGTAAAGGATGGATTTGAAAAGGAACCAATTGACGATTTGTATTTCATCATTTGTTCATGGATGAATAATGGAAACTTCGAGAAGAGAATGTGGACAGTTAAGTTGAATGATGAGCAATCTGGAGCGGAGATTTTGAAAAAGTTGGCAAACGATTTTTATGATGAGGATGTGAAAGAGAATCGGTGAGAAATATTTCATACCGAACATTTTTTTCCTGTTTTAAAATTTTTGGAAATGCTGAAGTTTCTTATTGTCGGAATTTGACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGTAGGTCAAACTTGAGTCCATATCTCATTTCCTGTCTAGGATATTTATAAGTGGTCYACTTATAAAATGTTTACCATGATATCAAAAATATTTTGTCAGTTGACCAATTTTTGATATCTTTCACAGGCGCCGAGATAAACTGGCATAAAGATTTGAGCAATTTGTTTGAAAAATCGCTTCTGAAAACTATCTCTTTCGAATCTTCATATTTTTAATGGGGTTATGCACGTAATAAATTTGCAATAAAAATGGCAAATAAACACACAAAAATACTATGCAGATACGCACATGGGTTCAAACCAATGGGTCAGAAATCGCGCCCCAGTAAACGTGAGATTTTAGAAAAAATTCGCTGCTAAATTATGTGGCTGAGGATCAAACTTTTAAACGTTGCACGAAAAAAGTCACGCGTTGCAACTCGTTGATTAGAACTAATTAGGTCGAATCCACGTCAGCTTGGAAATTATTAAATTTCTTCTGGCCTAAAAGTTATTTGGGGCGCGTTTTTTGACCCGTTGTGGATACGCAAATAAATTAATTTATTTGCATTCAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>504 376 120</canonical_bands>
                <polymorphic_bands>880 120</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>504 376 120</canonical_bands>
                <polymorphic_bands>880 120</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>161 104 87 79 78 71 65 46 42 37 35 34 33 28 24 23 20 14 12 5 2</canonical_bands>
                <polymorphic_bands>161 104 87 79 78 71 70 46 42 37 35 34 33 28 24 23 20 14 12 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTACAGTGTTATTGCTAAGCTC</pcr_primer_p1>
		<pcr_primer_p2>GAGATAGTTTTCAGAAGCGATTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGTAGGTCAAACTTGAGTCCATATCTCATTTCCTGTCTAGGATATTTATAAGTGGTCCACTTATAAAATGTTTACCATGATATCAAAAATATTTTGTCAGTTGACCAATTTTTGATATCTTTCACAGGCGCCGAGATAAACTGGCATAAAGATTTGAGCAATTTGTTTGAAAAATCGCTTCTGAAAACTATCTC</canonical_amplicon>
		<polymorphic_amplicon>GACTACAGTGTTATTGCTAAGCTCCGCCCACAAAATAGCCTTTTGCAATCATGCAGTAGGTCAAACTTGAGTCCATATCTCATTTCCTGTCTAGGATATTTATAAGTGGTCYACTTATAAAATGTTTACCATGATATCAAAAATATTTTGTCAGTTGACCAATTTTTGATATCTTTCACAGGCGCCGAGATAAACTGGCATAAAGATTTGAGCAATTTGTTTGAAAAATCGCTTCTGAAAACTATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33432</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>150079</contig_pos>
        <strand>+</strand>
        <context>ACAGTAAGAM[A/C]GRATAGKWCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAA</left_flank>
        <right_flank>GCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAAAAACACCAACTTCAAACATTTGGGTTTTCACTGAAAAATGAACAATGAAACAGTAAAAAAGGGTAGTAAAGATAATGTATTTCTCCCTTCTCTTTCTACTAATTATCTTTAGAAACAGAGAAAAAGAGACACCAGACAGCACTAAACTTTCGTTGCTTTGATTTATGACATTGAAAAATTGTTATAGAAAAAAGAAGAATAAGGTGAGATAGGGTTAGAAGAAGAAGAAGAAGAACGAATATGATGACGTTGACGGCAAAGATCATGGAAACTGAGAGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACTT</canonical>
            <polymorphic>GAGAAAAACACCAACTTCAAACATTTGGGTTTTCACTGAAAAATGAACAATGAAACAGTAAAAAAGGGTAGTAAAGATAATGTATTTCTCCCTTCTCTTTCTACTAATTATCTTTAGAAACAGAGAAAAAGAGACACCAGACAGCACTAAACTTTCGTTGCTTTGATTTATGACATTGAAAAATTGTTATAGAAAAAAGAAGAATAAGGTGAGATAGGGTTAGAAGAAGAAGAAGAAGAACGAATATGATGACGTTGACGGCAAAGATCATGGAAACTGAGAGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAAMGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATGCAT</site>
                <isoschizomers>
                    <enzyme>BfrBI</enzyme>
                    <enzyme>EcoT22I</enzyme>
                    <enzyme>Mph1103I</enzyme>
                    <enzyme>NsiI</enzyme>
                    <enzyme>Ppu10I</enzyme>
                    <enzyme>Zsp2I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>499 382 105 14</canonical_bands>
                <polymorphic_bands>513 382 105</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCGGATTAAAAACACCAC</pcr_primer_p1>
		<pcr_primer_p2>TATTTGAAACAGTAACATTTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>TTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAAMGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33433</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>150081</contig_pos>
        <strand>+</strand>
        <context>AGTAAGAMMG[A/G]ATAGKWCTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATG</left_flank>
        <right_flank>ATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAACACCAACTTCAAACATTTGGGTTTTCACTGAAAAATGAACAATGAAACAGTAAAAAAGGGTAGTAAAGATAATGTATTTCTCCCTTCTCTTTCTACTAATTATCTTTAGAAACAGAGAAAAAGAGACACCAGACAGCACTAAACTTTCGTTGCTTTGATTTATGACATTGAAAAATTGTTATAGAAAAAAGAAGAATAAGGTGAGATAGGGTTAGAAGAAGAAGAAGAAGAACGAATATGATGACGTTGACGGCAAAGATCATGGAAACTGAGAGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACTTGC</canonical>
            <polymorphic>GAAAAACACCAACTTCAAACATTTGGGTTTTCACTGAAAAATGAACAATGAAACAGTAAAAAAGGGTAGTAAAGATAATGTATTTCTCCCTTCTCTTTCTACTAATTATCTTTAGAAACAGAGAAAAAGAGACACCAGACAGCACTAAACTTTCGTTGCTTTGATTTATGACATTGAAAAATTGTTATAGAAAAAAGAAGAATAAGGTGAGATAGGGTTAGAAGAAGAAGAAGAAGAACGAATATGATGACGTTGACGGCAAAGATCATGGAAACTGAGAGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGRATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACTTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATGCAT</site>
                <isoschizomers>
                    <enzyme>BfrBI</enzyme>
                    <enzyme>EcoT22I</enzyme>
                    <enzyme>Mph1103I</enzyme>
                    <enzyme>NsiI</enzyme>
                    <enzyme>Ppu10I</enzyme>
                    <enzyme>Zsp2I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>501 380 105 14</canonical_bands>
                <polymorphic_bands>515 380 105</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCGGATTAAAAACACCAC</pcr_primer_p1>
		<pcr_primer_p2>TATTTGAAACAGTAACATTTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>TTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGRATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33434</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>150087</contig_pos>
        <strand>+</strand>
        <context>AMMGRATAGK[A/T]CTCGGAAGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGA</left_flank>
        <right_flank>CTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACCAACTTCAAACATTTGGGTTTTCACTGAAAAATGAACAATGAAACAGTAAAAAAGGGTAGTAAAGATAATGTATTTCTCCCTTCTCTTTCTACTAATTATCTTTAGAAACAGAGAAAAAGAGACACCAGACAGCACTAAACTTTCGTTGCTTTGATTTATGACATTGAAAAATTGTTATAGAAAAAAGAAGAATAAGGTGAGATAGGGTTAGAAGAAGAAGAAGAAGAACGAATATGATGACGTTGACGGCAAAGATCATGGAAACTGAGAGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACTTGCGATTTT</canonical>
            <polymorphic>CACCAACTTCAAACATTTGGGTTTTCACTGAAAAATGAACAATGAAACAGTAAAAAAGGGTAGTAAAGATAATGTATTTCTCCCTTCTCTTTCTACTAATTATCTTTAGAAACAGAGAAAAAGAGACACCAGACAGCACTAAACTTTCGTTGCTTTGATTTATGACATTGAAAAATTGTTATAGAAAAAAGAAGAATAAGGTGAGATAGGGTTAGAAGAAGAAGAAGAAGAACGAATATGATGACGTTGACGGCAAAGATCATGGAAACTGAGAGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGAWCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACTTGCGATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>503 257 240</canonical_bands>
                <polymorphic_bands>743 257</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCGGATTAAAAACACCAC</pcr_primer_p1>
		<pcr_primer_p2>TATTTGAAACAGTAACATTTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>TTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGAWCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33435</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>150104</contig_pos>
        <strand>+</strand>
        <context>AGTCTGGAGS[C/G]CGAATGTTAt</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGG</left_flank>
        <right_flank>CGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGGTTTTCACTGAAAAATGAACAATGAAACAGTAAAAAAGGGTAGTAAAGATAATGTATTTCTCCCTTCTCTTTCTACTAATTATCTTTAGAAACAGAGAAAAAGAGACACCAGACAGCACTAAACTTTCGTTGCTTTGATTTATGACATTGAAAAATTGTTATAGAAAAAAGAAGAATAAGGTGAGATAGGGTTAGAAGAAGAAGAAGAAGAACGAATATGATGACGTTGACGGCAAAGATCATGGAAACTGAGAGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACTTGCGATTTTTTAGAAACCTGAAACAG</canonical>
            <polymorphic>TGGGTTTTCACTGAAAAATGAACAATGAAACAGTAAAAAAGGGTAGTAAAGATAATGTATTTCTCCCTTCTCTTTCTACTAATTATCTTTAGAAACAGAGAAAAAGAGACACCAGACAGCACTAAACTTTCGTTGCTTTGATTTATGACATTGAAAAATTGTTATAGAAAAAAGAAGAATAAGGTGAGATAGGGTTAGAAGAAGAAGAAGAAGAACGAATATGATGACGTTGACGGCAAAGATCATGGAAACTGAGAGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGSCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACTTGCGATTTTTTAGAAACCTGAAACAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>384 332 167 117</canonical_bands>
                <polymorphic_bands>449 384 167</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCGGATTAAAAACACCAC</pcr_primer_p1>
		<pcr_primer_p2>TATTTGAAACAGTAACATTTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>TTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATA</canonical_amplicon>
		<polymorphic_amplicon>TTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGSCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33436</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>150117</contig_pos>
        <strand>+</strand>
        <context>AATGTTAttc[A/G]gaccattttc</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTC</left_flank>
        <right_flank>GACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATGAACAATGAAACAGTAAAAAAGGGTAGTAAAGATAATGTATTTCTCCCTTCTCTTTCTACTAATTATCTTTAGAAACAGAGAAAAAGAGACACCAGACAGCACTAAACTTTCGTTGCTTTGATTTATGACATTGAAAAATTGTTATAGAAAAAAGAAGAATAAGGTGAGATAGGGTTAGAAGAAGAAGAAGAAGAACGAATATGATGACGTTGACGGCAAAGATCATGGAAACTGAGAGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACTTGCGATTTTTTAGAAACCTGAAACAGTGATCTTTGGATT</canonical>
            <polymorphic>AAAAATGAACAATGAAACAGTAAAAAAGGGTAGTAAAGATAATGTATTTCTCCCTTCTCTTTCTACTAATTATCTTTAGAAACAGAGAAAAAGAGACACCAGACAGCACTAAACTTTCGTTGCTTTGATTTATGACATTGAAAAATTGTTATAGAAAAAAGAAGAATAAGGTGAGATAGGGTTAGAAGAAGAAGAAGAAGAACGAATATGATGACGTTGACGGCAAAGATCATGGAAACTGAGAGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCRGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACTTGCGATTTTTTAGAAACCTGAAACAGTGATCTTTGGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAGTAATTTTGCAACAGTAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTATTTTCGCTTAATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>225</pcr_amplicon_size>
		<canonical_amplicon>AACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAA</canonical_amplicon>
		<polymorphic_amplicon>AACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCRGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33437</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>150128</contig_pos>
        <strand>+</strand>
        <context>gaccattttc[G/T]agaatctgga</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTC</left_flank>
        <right_flank>AGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAAACAGTAAAAAAGGGTAGTAAAGATAATGTATTTCTCCCTTCTCTTTCTACTAATTATCTTTAGAAACAGAGAAAAAGAGACACCAGACAGCACTAAACTTTCGTTGCTTTGATTTATGACATTGAAAAATTGTTATAGAAAAAAGAAGAATAAGGTGAGATAGGGTTAGAAGAAGAAGAAGAAGAACGAATATGATGACGTTGACGGCAAAGATCATGGAAACTGAGAGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACTTGCGATTTTTTAGAAACCTGAAACAGTGATCTTTGGATTATTCAAAATTT</canonical>
            <polymorphic>ATGAAACAGTAAAAAAGGGTAGTAAAGATAATGTATTTCTCCCTTCTCTTTCTACTAATTATCTTTAGAAACAGAGAAAAAGAGACACCAGACAGCACTAAACTTTCGTTGCTTTGATTTATGACATTGAAAAATTGTTATAGAAAAAAGAAGAATAAGGTGAGATAGGGTTAGAAGAAGAAGAAGAAGAACGAATATGATGACGTTGACGGCAAAGATCATGGAAACTGAGAGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCKAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACTTGCGATTTTTTAGAAACCTGAAACAGTGATCTTTGGATTATTCAAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAGTAATTTTGCAACAGTAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTATTTTCGCTTAATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>225</pcr_amplicon_size>
		<canonical_amplicon>AACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAA</canonical_amplicon>
		<polymorphic_amplicon>AACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCKAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33438</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>150360</contig_pos>
        <strand>+</strand>
        <context>TTAACCGTCC[A/C]ATTCTTTATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCC</left_flank>
        <right_flank>ATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACTTGCGATTTTTTAGAAACCTGAAACAGTGATCTTTGGATTATTCAAAATTTTTATTGTCTGATAAGTGATCATTAAATTACTTGAGAAGGTGTGGTAAATTAGAACACTAAAAACTCAAAAAAAAATAATAAATTTCAATCAGATTTCCCGAAAATTCGTTCATGTTTCGGAGGTAAATGATTTTCCAAATGAACTCCTTTGGTTTCTGGAATGAATAAACTGAAAATGAGAAGATCCACGAGTTGGAGTCCAATGAGAACTGCATAAAGAATCCATTCAGCG</canonical>
            <polymorphic>AGAAAAATTTTTAATCCAAAAAAGAAGTTGTCAAAAGGTGTTACAGTGATTTAGTTTCGGATTAAAAACACCACGAGGGGGTAAAAAAATCAAAGTGTGTGCACGGTCAGAGGTTTTAGGGAATTCTCGAAGATTAAATGTCATTTAAACAAATTATAGCGGAAGTAGTGAATCAAAAACGTAAATTTTTTGGAACAGTAATTTTGCAACAGTAAGAATGCATAGATCTCGGAAGTCTGGAGGTCGAATGTTATTCGGACCATTTTCAAGAATCTGGAAATCGGCCGTCAAGTTTTCAGCCTAAAAACAAATGTTACTGTTTCAAATAGGTTTATTGTGTTTTCAACGAACTAAAGTAGCCAATCCGTGTATTCAATAACCAGCAAAAAGTTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCMATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACTTGCGATTTTTTAGAAACCTGAAACAGTGATCTTTGGATTATTCAAAATTTTTATTGTCTGATAAGTGATCATTAAATTACTTGAGAAGGTGTGGTAAATTAGAACACTAAAAACTCAAAAAAAAATAATAAATTTCAATCAGATTTCCCGAAAATTCGTTCATGTTTCGGAGGTAAATGATTTTCCAAATGAACTCCTTTGGTTTCTGGAATGAATAAACTGAAAATGAGAAGATCCACGAGTTGGAGTCCAATGAGAACTGCATAAAGAATCCATTCAGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>199 130 129 116 84 54 36 34 32 30 29 22 22 20 16 16 15 11 5</canonical_bands>
                <polymorphic_bands>199 183 130 116 84 36 34 32 30 29 22 22 20 16 16 15 11 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAACGAAAATTAAGCGAAAATA</pcr_primer_p1>
		<pcr_primer_p2>ATTTCAAAAATTTCACAAATACG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCAATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTAACGAAAATTAAGCGAAAATACAAAAAATTACTGATTCAAAAAATTCACAAAGAATTGAAAATACGTTATTTTCTCTGATTGTAGACATGCTATGCCTTAACCGTCCMATTCTTTATTTTATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33439</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>150871</contig_pos>
        <strand>+</strand>
        <context>ATGTCGCTCT[A/G]AAAAATTAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGGAGTCCAATGAGAACTGCATAAAGAATCCATTCAGCGATGTCGCTCT</left_flank>
        <right_flank>AAAAATTAGAGAAAATTACTGTTCCATAAAAAGTGTCAGGAAAAGAAGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACTTGCGATTTTTTAGAAACCTGAAACAGTGATCTTTGGATTATTCAAAATTTTTATTGTCTGATAAGTGATCATTAAATTACTTGAGAAGGTGTGGTAAATTAGAACACTAAAAACTCAAAAAAAAATAATAAATTTCAATCAGATTTCCCGAAAATTCGTTCATGTTTCGGAGGTAAATGATTTTCCAAATGAACTCCTTTGGTTTCTGGAATGAATAAACTGAAAATGAGAAGATCCACGAGTTGGAGTCCAATGAGAACTGCATAAAGAATCCATTCAGCGATGTCGCTCTAAAAAATTAGAGAAAATTACTGTTCCATAAAAAGTGTCAGGAAAAGAAGGTAACTTCTTTATTAAAAGGATGGTAATCTTCCGTTTTTCAGAAATTTCGAATATTTCAAAGTTTGAATTTCTGGTTTTCGGAAATGACATGTGCGGTATTGGTCAATAAGAAATACCAAACCGAATTTTCGGTGGATTTTCGGCCATTTCGACCATTCTCGGGAGTCTAGAGATCGGTCGTCAGGTTTCCGATTACTTTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATTGAAAATATTGCATTCACAGAATTTTTTGAAAATTTCTAGTTTTTCAGCTATTTGCCGATATCTGAAAGACACCGCTTTTTTGCCAGTTACTGTACTGAAAGCGTGAAAAAAGCAGGTGTGTCTCAGAAATCGGCAAATGTCTGACAAATAGGAATTTTTAAAAAAATCTGTGAACGCAAAGTTATCAATCTAGGTCTGTTTCACACTCTCCAAAATTT</canonical>
            <polymorphic>TATGCCACACTTTAACTACAGTACAATCATTAAGATATTAAAAAAAAACATATTTTTCAGCTATTCGACGATTTCTGAAAGACACCACTTTTCGTCAGTTTGGTAACGTATTTGTGAAATTTTTGAAATAGTAATTTATTTCACAGTAAATGTTGCTTTCTCTTTTTTAATTCCGGTGTTTTGAACATTATGCTGTCAAATATAACTTGCGATTTTTTAGAAACCTGAAACAGTGATCTTTGGATTATTCAAAATTTTTATTGTCTGATAAGTGATCATTAAATTACTTGAGAAGGTGTGGTAAATTAGAACACTAAAAACTCAAAAAAAAATAATAAATTTCAATCAGATTTCCCGAAAATTCGTTCATGTTTCGGAGGTAAATGATTTTCCAAATGAACTCCTTTGGTTTCTGGAATGAATAAACTGAAAATGAGAAGATCCACGAGTTGGAGTCCAATGAGAACTGCATAAAGAATCCATTCAGCGATGTCGCTCTRAAAAATTAGAGAAAATTACTGTTCCATAAAAAGTGTCAGGAAAAGAAGGTAACTTCTTTATTAAAAGGATGGTAATCTTCCGTTTTTCAGAAATTTCGAATATTTCAAAGTTTGAATTTCTGGTTTTCGGAAATGACATGTGCGGTATTGGTCAATAAGAAATACCAAACCGAATTTTCGGTGGATTTTCGGCCATTTCGACCATTCTCGGGAGTCTAGAGATCGGTCGTCAGGTTTCCGATTACTTTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATTGAAAATATTGCATTCACAGAATTTTTTGAAAATTTCTAGTTTTTCAGCTATTTGCCGATATCTGAAAGACACCGCTTTTTTGCCAGTTACTGTACTGAAAGCGTGAAAAAAGCAGGTGTGTCTCAGAAATCGGCAAATGTCTGACAAATAGGAATTTTTAAAAAAATCTGTGAACGCAAAGTTATCAATCTAGGTCTGTTTCACACTCTCCAAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATGATTTTCCAAATGAACTC</pcr_primer_p1>
		<pcr_primer_p2>CGAAAACCAGAAATTCAAACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAAATGATTTTCCAAATGAACTCCTTTGGTTTCTGGAATGAATAAACTGAAAATGAGAAGATCCACGAGTTGGAGTCCAATGAGAACTGCATAAAGAATCCATTCAGCGATGTCGCTCTAAAAAATTAGAGAAAATTACTGTTCCATAAAAAGTGTCAGGAAAAGAAGGTAACTTCTTTATTAAAAGGATGGTAATCTTCCGTTTTTCAGAAATTTCGAATATTTCAAAGTTTGAATTTCTGGTTTTCG</canonical_amplicon>
		<polymorphic_amplicon>TAAATGATTTTCCAAATGAACTCCTTTGGTTTCTGGAATGAATAAACTGAAAATGAGAAGATCCACGAGTTGGAGTCCAATGAGAACTGCATAAAGAATCCATTCAGCGATGTCGCTCTRAAAAATTAGAGAAAATTACTGTTCCATAAAAAGTGTCAGGAAAAGAAGGTAACTTCTTTATTAAAAGGATGGTAATCTTCCGTTTTTCAGAAATTTCGAATATTTCAAAGTTTGAATTTCTGGTTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33440</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>194718</contig_pos>
        <strand>+</strand>
        <context>TTTTATTACT[C/T]CCCTTGCCTR</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGGATAATATGGATTTCTAAATTTATACTGAAATTATGGTTTTATTACT</left_flank>
        <right_flank>CCCTTGCCTGTTCCATCCTCATGTTTTTTGTGCACATAATGAACTGATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTGAAAATTTTTGAGATACAAATCGACCGCTTCAAATTCGTCCATTGTTTTCTCTAATTTCCAGGACATCTACACCCAATTCGAAGCTAACATGACTGCTCACAAAAACGAGGTCCAACAAAACGTCACTCAAGTGGTCAGCCAACTCTCGGCCGCCCAGACCGCCTTGGGATCAGTCATGAACAATAAGAATCAGACCCGTCAACAGATGAAAGAGGCCATTGACAACTTGAAGACCCAATACCCACAAGAGATTCCAGCCCTGTTCTTCATCAGTGGACAATTCAGAAGAGGACCAATGGGACCAGGAGGTAGAAGAGGTGGACCAGGGGGAAGACGTGGTGGAGATTCTGGAGAGATGATGGGGATGGGAGGTGGAAGAGGAATGAGAATGGGAGGAGGAGGTATGGGAAGACGTGGCGGACCAGACAGCATGAACGAGTCTTCGGATAATATGGATTTCTAAATTTATACTGAAATTATGGTTTTATTACTCCCCTTGCCTGTTCCATCCTCATGTTTTTTGTGCACATAATGAACTGATTTTGAAAATTATATTTTTTCAGTTTGAAATTCGAAATTTTAGGACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTTTTAAACATTTTGAATGCTTCGATCGTTTCGAGATATTATTTCATTGAAATTCTAAAATAACGGCTAACTTGGTGAAAACCCTTAAATGCTACACGAAAATAGCTTCGAGAGTTTCGATTATTCTACTGTTTCAATCATTTTTCGTTATGAGGATGTAAAATGAAAGTTAATCCAACCGCTAGATGGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGA</canonical>
            <polymorphic>AAAATTGAAAATTTTTGAGATACAAATCGACCGCTTCAAATTCGTCCATTGTTTTCTCTAATTTCCAGGACATCTACACCCAATTCGAAGCTAACATGACTGCTCACAAAAACGAGGTCCAACAAAACGTCACTCAAGTGGTCAGCCAACTCTCGGCCGCCCAGACCGCCTTGGGATCAGTCATGAACAATAAGAATCAGACCCGTCAACAGATGAAAGAGGCCATTGACAACTTGAAGACCCAATACCCACAAGAGATTCCAGCCCTGTTCTTCATCAGTGGACAATTCAGAAGAGGACCAATGGGACCAGGAGGTAGAAGAGGTGGACCAGGGGGAAGACGTGGTGGAGATTCTGGAGAGATGATGGGGATGGGAGGTGGAAGAGGAATGAGAATGGGAGGAGGAGGTATGGGAAGACGTGGCGGACCAGACAGCATGAACGAGTCTTCGGATAATATGGATTTCTAAATTTATACTGAAATTATGGTTTTATTACTYCCCTTGCCTGTTCCATCCTCATGTTTTTTGTGCACATAATGAACTGATTTTGAAAATTATATTTTTTCAGTTTGAAATTCGAAATTTTAGGACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTTTTAAACATTTTGAATGCTTCGATCGTTTCGAGATATTATTTCATTGAAATTCTAAAATAACGGCTAACTTGGTGAAAACCCTTAAATGCTACACGAAAATAGCTTCGAGAGTTTCGATTATTCTACTGTTTCAATCATTTTTCGTTATGAGGATGTAAAATGAAAGTTAATCCAACCGCTAGATGGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAACGAGTCTTCGGATAATA</pcr_primer_p1>
		<pcr_primer_p2>AAATTAAACATTTTTGGAAACAG</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>ATGAACGAGTCTTCGGATAATATGGATTTCTAAATTTATACTGAAATTATGGTTTTATTACTCCCCTTGCCTGTTCCATCCTCATGTTTTTTGTGCACATAATGAACTGATTTTGAAAATTATATTTTTTCAGTTTGAAATTCGAAATTTTAGGACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATGAACGAGTCTTCGGATAATATGGATTTCTAAATTTATACTGAAATTATGGTTTTATTACTYCCCTTGCCTGTTCCATCCTCATGTTTTTTGTGCACATAATGAACTGATTTTGAAAATTATATTTTTTCAGTTTGAAATTCGAAATTTTAGGACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33441</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>194728</contig_pos>
        <strand>+</strand>
        <context>YCCCTTGCCT[A/G]TTYCAYYCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGATTTCTAAATTTATACTGAAATTATGGTTTTATTACTCCCCTTGCCT</left_flank>
        <right_flank>TTCCATCCTCATGTTTTTTGTGCACATAATGAACTGATTTTGAAAATTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTGAGATACAAATCGACCGCTTCAAATTCGTCCATTGTTTTCTCTAATTTCCAGGACATCTACACCCAATTCGAAGCTAACATGACTGCTCACAAAAACGAGGTCCAACAAAACGTCACTCAAGTGGTCAGCCAACTCTCGGCCGCCCAGACCGCCTTGGGATCAGTCATGAACAATAAGAATCAGACCCGTCAACAGATGAAAGAGGCCATTGACAACTTGAAGACCCAATACCCACAAGAGATTCCAGCCCTGTTCTTCATCAGTGGACAATTCAGAAGAGGACCAATGGGACCAGGAGGTAGAAGAGGTGGACCAGGGGGAAGACGTGGTGGAGATTCTGGAGAGATGATGGGGATGGGAGGTGGAAGAGGAATGAGAATGGGAGGAGGAGGTATGGGAAGACGTGGCGGACCAGACAGCATGAACGAGTCTTCGGATAATATGGATTTCTAAATTTATACTGAAATTATGGTTTTATTACTCCCCTTGCCTGTTCCATCCTCATGTTTTTTGTGCACATAATGAACTGATTTTGAAAATTATATTTTTTCAGTTTGAAATTCGAAATTTTAGGACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTTTTAAACATTTTGAATGCTTCGATCGTTTCGAGATATTATTTCATTGAAATTCTAAAATAACGGCTAACTTGGTGAAAACCCTTAAATGCTACACGAAAATAGCTTCGAGAGTTTCGATTATTCTACTGTTTCAATCATTTTTCGTTATGAGGATGTAAAATGAAAGTTAATCCAACCGCTAGATGGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAG</canonical>
            <polymorphic>ATTTTTGAGATACAAATCGACCGCTTCAAATTCGTCCATTGTTTTCTCTAATTTCCAGGACATCTACACCCAATTCGAAGCTAACATGACTGCTCACAAAAACGAGGTCCAACAAAACGTCACTCAAGTGGTCAGCCAACTCTCGGCCGCCCAGACCGCCTTGGGATCAGTCATGAACAATAAGAATCAGACCCGTCAACAGATGAAAGAGGCCATTGACAACTTGAAGACCCAATACCCACAAGAGATTCCAGCCCTGTTCTTCATCAGTGGACAATTCAGAAGAGGACCAATGGGACCAGGAGGTAGAAGAGGTGGACCAGGGGGAAGACGTGGTGGAGATTCTGGAGAGATGATGGGGATGGGAGGTGGAAGAGGAATGAGAATGGGAGGAGGAGGTATGGGAAGACGTGGCGGACCAGACAGCATGAACGAGTCTTCGGATAATATGGATTTCTAAATTTATACTGAAATTATGGTTTTATTACTCCCCTTGCCTRTTCCATCCTCATGTTTTTTGTGCACATAATGAACTGATTTTGAAAATTATATTTTTTCAGTTTGAAATTCGAAATTTTAGGACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTTTTAAACATTTTGAATGCTTCGATCGTTTCGAGATATTATTTCATTGAAATTCTAAAATAACGGCTAACTTGGTGAAAACCCTTAAATGCTACACGAAAATAGCTTCGAGAGTTTCGATTATTCTACTGTTTCAATCATTTTTCGTTATGAGGATGTAAAATGAAAGTTAATCCAACCGCTAGATGGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAACGAGTCTTCGGATAATA</pcr_primer_p1>
		<pcr_primer_p2>AAATTAAACATTTTTGGAAACAG</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>ATGAACGAGTCTTCGGATAATATGGATTTCTAAATTTATACTGAAATTATGGTTTTATTACTCCCCTTGCCTGTTCCATCCTCATGTTTTTTGTGCACATAATGAACTGATTTTGAAAATTATATTTTTTCAGTTTGAAATTCGAAATTTTAGGACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATGAACGAGTCTTCGGATAATATGGATTTCTAAATTTATACTGAAATTATGGTTTTATTACTCCCCTTGCCTRTTCCATCCTCATGTTTTTTGTGCACATAATGAACTGATTTTGAAAATTATATTTTTTCAGTTTGAAATTCGAAATTTTAGGACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33442</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>194731</contig_pos>
        <strand>+</strand>
        <context>CTTGCCTRTT[C/T]CAYYCTCATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTCTAAATTTATACTGAAATTATGGTTTTATTACTCCCCTTGCCTGTT</left_flank>
        <right_flank>CATCCTCATGTTTTTTGTGCACATAATGAACTGATTTTGAAAATTATATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAGATACAAATCGACCGCTTCAAATTCGTCCATTGTTTTCTCTAATTTCCAGGACATCTACACCCAATTCGAAGCTAACATGACTGCTCACAAAAACGAGGTCCAACAAAACGTCACTCAAGTGGTCAGCCAACTCTCGGCCGCCCAGACCGCCTTGGGATCAGTCATGAACAATAAGAATCAGACCCGTCAACAGATGAAAGAGGCCATTGACAACTTGAAGACCCAATACCCACAAGAGATTCCAGCCCTGTTCTTCATCAGTGGACAATTCAGAAGAGGACCAATGGGACCAGGAGGTAGAAGAGGTGGACCAGGGGGAAGACGTGGTGGAGATTCTGGAGAGATGATGGGGATGGGAGGTGGAAGAGGAATGAGAATGGGAGGAGGAGGTATGGGAAGACGTGGCGGACCAGACAGCATGAACGAGTCTTCGGATAATATGGATTTCTAAATTTATACTGAAATTATGGTTTTATTACTCCCCTTGCCTGTTCCATCCTCATGTTTTTTGTGCACATAATGAACTGATTTTGAAAATTATATTTTTTCAGTTTGAAATTCGAAATTTTAGGACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTTTTAAACATTTTGAATGCTTCGATCGTTTCGAGATATTATTTCATTGAAATTCTAAAATAACGGCTAACTTGGTGAAAACCCTTAAATGCTACACGAAAATAGCTTCGAGAGTTTCGATTATTCTACTGTTTCAATCATTTTTCGTTATGAGGATGTAAAATGAAAGTTAATCCAACCGCTAGATGGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAGCTC</canonical>
            <polymorphic>TTTGAGATACAAATCGACCGCTTCAAATTCGTCCATTGTTTTCTCTAATTTCCAGGACATCTACACCCAATTCGAAGCTAACATGACTGCTCACAAAAACGAGGTCCAACAAAACGTCACTCAAGTGGTCAGCCAACTCTCGGCCGCCCAGACCGCCTTGGGATCAGTCATGAACAATAAGAATCAGACCCGTCAACAGATGAAAGAGGCCATTGACAACTTGAAGACCCAATACCCACAAGAGATTCCAGCCCTGTTCTTCATCAGTGGACAATTCAGAAGAGGACCAATGGGACCAGGAGGTAGAAGAGGTGGACCAGGGGGAAGACGTGGTGGAGATTCTGGAGAGATGATGGGGATGGGAGGTGGAAGAGGAATGAGAATGGGAGGAGGAGGTATGGGAAGACGTGGCGGACCAGACAGCATGAACGAGTCTTCGGATAATATGGATTTCTAAATTTATACTGAAATTATGGTTTTATTACTCCCCTTGCCTGTTYCATCCTCATGTTTTTTGTGCACATAATGAACTGATTTTGAAAATTATATTTTTTCAGTTTGAAATTCGAAATTTTAGGACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTTTTAAACATTTTGAATGCTTCGATCGTTTCGAGATATTATTTCATTGAAATTCTAAAATAACGGCTAACTTGGTGAAAACCCTTAAATGCTACACGAAAATAGCTTCGAGAGTTTCGATTATTCTACTGTTTCAATCATTTTTCGTTATGAGGATGTAAAATGAAAGTTAATCCAACCGCTAGATGGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAACGAGTCTTCGGATAATA</pcr_primer_p1>
		<pcr_primer_p2>AAATTAAACATTTTTGGAAACAG</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>ATGAACGAGTCTTCGGATAATATGGATTTCTAAATTTATACTGAAATTATGGTTTTATTACTCCCCTTGCCTGTTCCATCCTCATGTTTTTTGTGCACATAATGAACTGATTTTGAAAATTATATTTTTTCAGTTTGAAATTCGAAATTTTAGGACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATGAACGAGTCTTCGGATAATATGGATTTCTAAATTTATACTGAAATTATGGTTTTATTACTCCCCTTGCCTGTTYCATCCTCATGTTTTTTGTGCACATAATGAACTGATTTTGAAAATTATATTTTTTCAGTTTGAAATTCGAAATTTTAGGACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33443</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>194734</contig_pos>
        <strand>+</strand>
        <context>GCCTRTTYCA[C/T]YCTCATGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTAAATTTATACTGAAATTATGGTTTTATTACTCCCCTTGCCTGTTCCA</left_flank>
        <right_flank>CCTCATGTTTTTTGTGCACATAATGAACTGATTTTGAAAATTATATTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGATACAAATCGACCGCTTCAAATTCGTCCATTGTTTTCTCTAATTTCCAGGACATCTACACCCAATTCGAAGCTAACATGACTGCTCACAAAAACGAGGTCCAACAAAACGTCACTCAAGTGGTCAGCCAACTCTCGGCCGCCCAGACCGCCTTGGGATCAGTCATGAACAATAAGAATCAGACCCGTCAACAGATGAAAGAGGCCATTGACAACTTGAAGACCCAATACCCACAAGAGATTCCAGCCCTGTTCTTCATCAGTGGACAATTCAGAAGAGGACCAATGGGACCAGGAGGTAGAAGAGGTGGACCAGGGGGAAGACGTGGTGGAGATTCTGGAGAGATGATGGGGATGGGAGGTGGAAGAGGAATGAGAATGGGAGGAGGAGGTATGGGAAGACGTGGCGGACCAGACAGCATGAACGAGTCTTCGGATAATATGGATTTCTAAATTTATACTGAAATTATGGTTTTATTACTCCCCTTGCCTGTTCCATCCTCATGTTTTTTGTGCACATAATGAACTGATTTTGAAAATTATATTTTTTCAGTTTGAAATTCGAAATTTTAGGACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTTTTAAACATTTTGAATGCTTCGATCGTTTCGAGATATTATTTCATTGAAATTCTAAAATAACGGCTAACTTGGTGAAAACCCTTAAATGCTACACGAAAATAGCTTCGAGAGTTTCGATTATTCTACTGTTTCAATCATTTTTCGTTATGAGGATGTAAAATGAAAGTTAATCCAACCGCTAGATGGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAGCTCGAG</canonical>
            <polymorphic>GAGATACAAATCGACCGCTTCAAATTCGTCCATTGTTTTCTCTAATTTCCAGGACATCTACACCCAATTCGAAGCTAACATGACTGCTCACAAAAACGAGGTCCAACAAAACGTCACTCAAGTGGTCAGCCAACTCTCGGCCGCCCAGACCGCCTTGGGATCAGTCATGAACAATAAGAATCAGACCCGTCAACAGATGAAAGAGGCCATTGACAACTTGAAGACCCAATACCCACAAGAGATTCCAGCCCTGTTCTTCATCAGTGGACAATTCAGAAGAGGACCAATGGGACCAGGAGGTAGAAGAGGTGGACCAGGGGGAAGACGTGGTGGAGATTCTGGAGAGATGATGGGGATGGGAGGTGGAAGAGGAATGAGAATGGGAGGAGGAGGTATGGGAAGACGTGGCGGACCAGACAGCATGAACGAGTCTTCGGATAATATGGATTTCTAAATTTATACTGAAATTATGGTTTTATTACTCCCCTTGCCTGTTCCAYCCTCATGTTTTTTGTGCACATAATGAACTGATTTTGAAAATTATATTTTTTCAGTTTGAAATTCGAAATTTTAGGACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTTTTAAACATTTTGAATGCTTCGATCGTTTCGAGATATTATTTCATTGAAATTCTAAAATAACGGCTAACTTGGTGAAAACCCTTAAATGCTACACGAAAATAGCTTCGAGAGTTTCGATTATTCTACTGTTTCAATCATTTTTCGTTATGAGGATGTAAAATGAAAGTTAATCCAACCGCTAGATGGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAGCTCGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>498 383 119</canonical_bands>
                <polymorphic_bands>881 119</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAACGAGTCTTCGGATAATA</pcr_primer_p1>
		<pcr_primer_p2>AAATTAAACATTTTTGGAAACAG</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>ATGAACGAGTCTTCGGATAATATGGATTTCTAAATTTATACTGAAATTATGGTTTTATTACTCCCCTTGCCTGTTCCATCCTCATGTTTTTTGTGCACATAATGAACTGATTTTGAAAATTATATTTTTTCAGTTTGAAATTCGAAATTTTAGGACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATGAACGAGTCTTCGGATAATATGGATTTCTAAATTTATACTGAAATTATGGTTTTATTACTCCCCTTGCCTGTTCCAYCCTCATGTTTTTTGTGCACATAATGAACTGATTTTGAAAATTATATTTTTTCAGTTTGAAATTCGAAATTTTAGGACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33444</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>194735</contig_pos>
        <strand>+</strand>
        <context>CCTRTTYCAY[C/T]CTCATGTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAAATTTATACTGAAATTATGGTTTTATTACTCCCCTTGCCTGTTCCAT</left_flank>
        <right_flank>CTCATGTTTTTTGTGCACATAATGAACTGATTTTGAAAATTATATTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATACAAATCGACCGCTTCAAATTCGTCCATTGTTTTCTCTAATTTCCAGGACATCTACACCCAATTCGAAGCTAACATGACTGCTCACAAAAACGAGGTCCAACAAAACGTCACTCAAGTGGTCAGCCAACTCTCGGCCGCCCAGACCGCCTTGGGATCAGTCATGAACAATAAGAATCAGACCCGTCAACAGATGAAAGAGGCCATTGACAACTTGAAGACCCAATACCCACAAGAGATTCCAGCCCTGTTCTTCATCAGTGGACAATTCAGAAGAGGACCAATGGGACCAGGAGGTAGAAGAGGTGGACCAGGGGGAAGACGTGGTGGAGATTCTGGAGAGATGATGGGGATGGGAGGTGGAAGAGGAATGAGAATGGGAGGAGGAGGTATGGGAAGACGTGGCGGACCAGACAGCATGAACGAGTCTTCGGATAATATGGATTTCTAAATTTATACTGAAATTATGGTTTTATTACTCCCCTTGCCTGTTCCATCCTCATGTTTTTTGTGCACATAATGAACTGATTTTGAAAATTATATTTTTTCAGTTTGAAATTCGAAATTTTAGGACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTTTTAAACATTTTGAATGCTTCGATCGTTTCGAGATATTATTTCATTGAAATTCTAAAATAACGGCTAACTTGGTGAAAACCCTTAAATGCTACACGAAAATAGCTTCGAGAGTTTCGATTATTCTACTGTTTCAATCATTTTTCGTTATGAGGATGTAAAATGAAAGTTAATCCAACCGCTAGATGGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAGCTCGAGA</canonical>
            <polymorphic>AGATACAAATCGACCGCTTCAAATTCGTCCATTGTTTTCTCTAATTTCCAGGACATCTACACCCAATTCGAAGCTAACATGACTGCTCACAAAAACGAGGTCCAACAAAACGTCACTCAAGTGGTCAGCCAACTCTCGGCCGCCCAGACCGCCTTGGGATCAGTCATGAACAATAAGAATCAGACCCGTCAACAGATGAAAGAGGCCATTGACAACTTGAAGACCCAATACCCACAAGAGATTCCAGCCCTGTTCTTCATCAGTGGACAATTCAGAAGAGGACCAATGGGACCAGGAGGTAGAAGAGGTGGACCAGGGGGAAGACGTGGTGGAGATTCTGGAGAGATGATGGGGATGGGAGGTGGAAGAGGAATGAGAATGGGAGGAGGAGGTATGGGAAGACGTGGCGGACCAGACAGCATGAACGAGTCTTCGGATAATATGGATTTCTAAATTTATACTGAAATTATGGTTTTATTACTCCCCTTGCCTGTTCCATYCTCATGTTTTTTGTGCACATAATGAACTGATTTTGAAAATTATATTTTTTCAGTTTGAAATTCGAAATTTTAGGACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTTTTAAACATTTTGAATGCTTCGATCGTTTCGAGATATTATTTCATTGAAATTCTAAAATAACGGCTAACTTGGTGAAAACCCTTAAATGCTACACGAAAATAGCTTCGAGAGTTTCGATTATTCTACTGTTTCAATCATTTTTCGTTATGAGGATGTAAAATGAAAGTTAATCCAACCGCTAGATGGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAGCTCGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAACGAGTCTTCGGATAATA</pcr_primer_p1>
		<pcr_primer_p2>AAATTAAACATTTTTGGAAACAG</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>ATGAACGAGTCTTCGGATAATATGGATTTCTAAATTTATACTGAAATTATGGTTTTATTACTCCCCTTGCCTGTTCCATCCTCATGTTTTTTGTGCACATAATGAACTGATTTTGAAAATTATATTTTTTCAGTTTGAAATTCGAAATTTTAGGACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATGAACGAGTCTTCGGATAATATGGATTTCTAAATTTATACTGAAATTATGGTTTTATTACTCCCCTTGCCTGTTCCATYCTCATGTTTTTTGTGCACATAATGAACTGATTTTGAAAATTATATTTTTTCAGTTTGAAATTCGAAATTTTAGGACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33445</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>194763</contig_pos>
        <strand>+</strand>
        <context>CATAATGAAC[G/T]GATTTTGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTACTCCCCTTGCCTGTTCCATCCTCATGTTTTTTGTGCACATAATGAAC</left_flank>
        <right_flank>GATTTTGAAAATTATATTTTTTCAGTTTGAAATTCGAAATTTTAGGACAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATTGTTTTCTCTAATTTCCAGGACATCTACACCCAATTCGAAGCTAACATGACTGCTCACAAAAACGAGGTCCAACAAAACGTCACTCAAGTGGTCAGCCAACTCTCGGCCGCCCAGACCGCCTTGGGATCAGTCATGAACAATAAGAATCAGACCCGTCAACAGATGAAAGAGGCCATTGACAACTTGAAGACCCAATACCCACAAGAGATTCCAGCCCTGTTCTTCATCAGTGGACAATTCAGAAGAGGACCAATGGGACCAGGAGGTAGAAGAGGTGGACCAGGGGGAAGACGTGGTGGAGATTCTGGAGAGATGATGGGGATGGGAGGTGGAAGAGGAATGAGAATGGGAGGAGGAGGTATGGGAAGACGTGGCGGACCAGACAGCATGAACGAGTCTTCGGATAATATGGATTTCTAAATTTATACTGAAATTATGGTTTTATTACTCCCCTTGCCTGTTCCATCCTCATGTTTTTTGTGCACATAATGAACTGATTTTGAAAATTATATTTTTTCAGTTTGAAATTCGAAATTTTAGGACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTTTTAAACATTTTGAATGCTTCGATCGTTTCGAGATATTATTTCATTGAAATTCTAAAATAACGGCTAACTTGGTGAAAACCCTTAAATGCTACACGAAAATAGCTTCGAGAGTTTCGATTATTCTACTGTTTCAATCATTTTTCGTTATGAGGATGTAAAATGAAAGTTAATCCAACCGCTAGATGGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAGCTCGAGACTAGAAGTTAGGAAAGGGTCTTTCTATC</canonical>
            <polymorphic>CCATTGTTTTCTCTAATTTCCAGGACATCTACACCCAATTCGAAGCTAACATGACTGCTCACAAAAACGAGGTCCAACAAAACGTCACTCAAGTGGTCAGCCAACTCTCGGCCGCCCAGACCGCCTTGGGATCAGTCATGAACAATAAGAATCAGACCCGTCAACAGATGAAAGAGGCCATTGACAACTTGAAGACCCAATACCCACAAGAGATTCCAGCCCTGTTCTTCATCAGTGGACAATTCAGAAGAGGACCAATGGGACCAGGAGGTAGAAGAGGTGGACCAGGGGGAAGACGTGGTGGAGATTCTGGAGAGATGATGGGGATGGGAGGTGGAAGAGGAATGAGAATGGGAGGAGGAGGTATGGGAAGACGTGGCGGACCAGACAGCATGAACGAGTCTTCGGATAATATGGATTTCTAAATTTATACTGAAATTATGGTTTTATTACTCCCCTTGCCTGTTCCATCCTCATGTTTTTTGTGCACATAATGAACKGATTTTGAAAATTATATTTTTTCAGTTTGAAATTCGAAATTTTAGGACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTTTTAAACATTTTGAATGCTTCGATCGTTTCGAGATATTATTTCATTGAAATTCTAAAATAACGGCTAACTTGGTGAAAACCCTTAAATGCTACACGAAAATAGCTTCGAGAGTTTCGATTATTCTACTGTTTCAATCATTTTTCGTTATGAGGATGTAAAATGAAAGTTAATCCAACCGCTAGATGGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAGCTCGAGACTAGAAGTTAGGAAAGGGTCTTTCTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAACGAGTCTTCGGATAATA</pcr_primer_p1>
		<pcr_primer_p2>AAATTAAACATTTTTGGAAACAG</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>ATGAACGAGTCTTCGGATAATATGGATTTCTAAATTTATACTGAAATTATGGTTTTATTACTCCCCTTGCCTGTTCCATCCTCATGTTTTTTGTGCACATAATGAACTGATTTTGAAAATTATATTTTTTCAGTTTGAAATTCGAAATTTTAGGACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATGAACGAGTCTTCGGATAATATGGATTTCTAAATTTATACTGAAATTATGGTTTTATTACTCCCCTTGCCTGTTCCATCCTCATGTTTTTTGTGCACATAATGAACKGATTTTGAAAATTATATTTTTTCAGTTTGAAATTCGAAATTTTAGGACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33446</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>195128</contig_pos>
        <strand>+</strand>
        <context>ATTACCGTAA[A/G]CACTTTAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAA</left_flank>
        <right_flank>CACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTT</right_flank>
        <qual_score>146</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGGAAGACGTGGCGGACCAGACAGCATGAACGAGTCTTCGGATAATATGGATTTCTAAATTTATACTGAAATTATGGTTTTATTACTCCCCTTGCCTGTTCCATCCTCATGTTTTTTGTGCACATAATGAACTGATTTTGAAAATTATATTTTTTCAGTTTGAAATTCGAAATTTTAGGACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTTTTAAACATTTTGAATGCTTCGATCGTTTCGAGATATTATTTCATTGAAATTCTAAAATAACGGCTAACTTGGTGAAAACCCTTAAATGCTACACGAAAATAGCTTCGAGAGTTTCGATTATTCTACTGTTTCAATCATTTTTCGTTATGAGGATGTAAAATGAAAGTTAATCCAACCGCTAGATGGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAGCTCGAGACTAGAAGTTAGGAAAGGGTCTTTCTATCAAATTGTTCACGGTAATTCAAAGATGAAAGAGAAGGAAAAAAAAATTCAAATTAGAATTTTTCACTGTTTCATAATGGACTTTTCATTGATACCTCTACTAGTGGGTAGTCTTTCTTGAAAAATCATTCACATTTATGTTTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCGAATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGTCAAATTGTCACATTTTTCAAAAAATTATTGTTTCAAAAATGTTAAACTTTAAAAAAATTTCAAACGCTTCGATGGTATTTTGGAAATCATTGGAATTCTAAAATAACGGCTAACTTGGTGAAAACCTTTGAATGCT</canonical>
            <polymorphic>ATGGGAAGACGTGGCGGACCAGACAGCATGAACGAGTCTTCGGATAATATGGATTTCTAAATTTATACTGAAATTATGGTTTTATTACTCCCCTTGCCTGTTCCATCCTCATGTTTTTTGTGCACATAATGAACTGATTTTGAAAATTATATTTTTTCAGTTTGAAATTCGAAATTTTAGGACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTTTTAAACATTTTGAATGCTTCGATCGTTTCGAGATATTATTTCATTGAAATTCTAAAATAACGGCTAACTTGGTGAAAACCCTTAAATGCTACACGAAAATAGCTTCGAGAGTTTCGATTATTCTACTGTTTCAATCATTTTTCGTTATGAGGATGTAAAATGAAAGTTAATCCAACCGCTAGATGGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAARCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAGCTCGAGACTAGAAGTTAGGAAAGGGTCTTTCTATCAAATTGTTCACGGTAATTCAAAGATGAAAGAGAAGGAAAAAAAAATTCAAATTAGAATTTTTCACTGTTTCATAATGGACTTTTCATTGATACCTCTACTAGTGGGTAGTCTTTCTTGAAAAATCATTCACATTTATGTTTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCGAATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGTCAAATTGTCACATTTTTCAAAAAATTATTGTTTCAAAAATGTTAAACTTTAAAAAAATTTCAAACGCTTCGATGGTATTTTGGAAATCATTGGAATTCTAAAATAACGGCTAACTTGGTGAAAACCTTTGAATGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCGTTATGAGGATGTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AATTACCGTGAACAATTTGATAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCGTTATGAGGATGTAAAATGAAAGTTAATCCAACCGCTAGATGGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAGCTCGAGACTAGAAGTTAGGAAAGGGTCTTTCTATCAAATTGTTCACGGTAATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCGTTATGAGGATGTAAAATGAAAGTTAATCCAACCGCTAGATGGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAARCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAGCTCGAGACTAGAAGTTAGGAAAGGGTCTTTCTATCAAATTGTTCACGGTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33447</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>195157</contig_pos>
        <strand>+</strand>
        <context>ATCAAACCGT[C/G]AAATTCGAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGT</left_flank>
        <right_flank>AAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACGAGTCTTCGGATAATATGGATTTCTAAATTTATACTGAAATTATGGTTTTATTACTCCCCTTGCCTGTTCCATCCTCATGTTTTTTGTGCACATAATGAACTGATTTTGAAAATTATATTTTTTCAGTTTGAAATTCGAAATTTTAGGACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTTTTAAACATTTTGAATGCTTCGATCGTTTCGAGATATTATTTCATTGAAATTCTAAAATAACGGCTAACTTGGTGAAAACCCTTAAATGCTACACGAAAATAGCTTCGAGAGTTTCGATTATTCTACTGTTTCAATCATTTTTCGTTATGAGGATGTAAAATGAAAGTTAATCCAACCGCTAGATGGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAGCTCGAGACTAGAAGTTAGGAAAGGGTCTTTCTATCAAATTGTTCACGGTAATTCAAAGATGAAAGAGAAGGAAAAAAAAATTCAAATTAGAATTTTTCACTGTTTCATAATGGACTTTTCATTGATACCTCTACTAGTGGGTAGTCTTTCTTGAAAAATCATTCACATTTATGTTTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCGAATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGTCAAATTGTCACATTTTTCAAAAAATTATTGTTTCAAAAATGTTAAACTTTAAAAAAATTTCAAACGCTTCGATGGTATTTTGGAAATCATTGGAATTCTAAAATAACGGCTAACTTGGTGAAAACCTTTGAATGCTACACCAAAATAGCCTCGAGAATTTCTAGA</canonical>
            <polymorphic>GAACGAGTCTTCGGATAATATGGATTTCTAAATTTATACTGAAATTATGGTTTTATTACTCCCCTTGCCTGTTCCATCCTCATGTTTTTTGTGCACATAATGAACTGATTTTGAAAATTATATTTTTTCAGTTTGAAATTCGAAATTTTAGGACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTTTTAAACATTTTGAATGCTTCGATCGTTTCGAGATATTATTTCATTGAAATTCTAAAATAACGGCTAACTTGGTGAAAACCCTTAAATGCTACACGAAAATAGCTTCGAGAGTTTCGATTATTCTACTGTTTCAATCATTTTTCGTTATGAGGATGTAAAATGAAAGTTAATCCAACCGCTAGATGGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTSAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAGCTCGAGACTAGAAGTTAGGAAAGGGTCTTTCTATCAAATTGTTCACGGTAATTCAAAGATGAAAGAGAAGGAAAAAAAAATTCAAATTAGAATTTTTCACTGTTTCATAATGGACTTTTCATTGATACCTCTACTAGTGGGTAGTCTTTCTTGAAAAATCATTCACATTTATGTTTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCGAATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGTCAAATTGTCACATTTTTCAAAAAATTATTGTTTCAAAAATGTTAAACTTTAAAAAAATTTCAAACGCTTCGATGGTATTTTGGAAATCATTGGAATTCTAAAATAACGGCTAACTTGGTGAAAACCTTTGAATGCTACACCAAAATAGCCTCGAGAATTTCTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATGAATCTACTGACGATGAA</pcr_primer_p1>
		<pcr_primer_p2>AAGTCCATTATGAAACAGTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAGCTCGAGACTAGAAGTTAGGAAAGGGTCTTTCTATCAAATTGTTCACGGTAATTCAAAGATGAAAGAGAAGGAAAAAAAAATTCAAATTAGAATTTTTCACTGTTTCATAATGGACTT</canonical_amplicon>
		<polymorphic_amplicon>AAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTSAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAGCTCGAGACTAGAAGTTAGGAAAGGGTCTTTCTATCAAATTGTTCACGGTAATTCAAAGATGAAAGAGAAGGAAAAAAAAATTCAAATTAGAATTTTTCACTGTTTCATAATGGACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33448</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>195200</contig_pos>
        <strand>+</strand>
        <context>CCATTTTTTT[A/T]ATATTTCACA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTT</left_flank>
        <right_flank>ATATTTCACAAAAACTGAGATAAATCAGCTCGAGACTAGAAGTTAGGAAA</right_flank>
        <qual_score>146</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATGGTTTTATTACTCCCCTTGCCTGTTCCATCCTCATGTTTTTTGTGCACATAATGAACTGATTTTGAAAATTATATTTTTTCAGTTTGAAATTCGAAATTTTAGGACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTTTTAAACATTTTGAATGCTTCGATCGTTTCGAGATATTATTTCATTGAAATTCTAAAATAACGGCTAACTTGGTGAAAACCCTTAAATGCTACACGAAAATAGCTTCGAGAGTTTCGATTATTCTACTGTTTCAATCATTTTTCGTTATGAGGATGTAAAATGAAAGTTAATCCAACCGCTAGATGGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAGCTCGAGACTAGAAGTTAGGAAAGGGTCTTTCTATCAAATTGTTCACGGTAATTCAAAGATGAAAGAGAAGGAAAAAAAAATTCAAATTAGAATTTTTCACTGTTTCATAATGGACTTTTCATTGATACCTCTACTAGTGGGTAGTCTTTCTTGAAAAATCATTCACATTTATGTTTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCGAATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGTCAAATTGTCACATTTTTCAAAAAATTATTGTTTCAAAAATGTTAAACTTTAAAAAAATTTCAAACGCTTCGATGGTATTTTGGAAATCATTGGAATTCTAAAATAACGGCTAACTTGGTGAAAACCTTTGAATGCTACACCAAAATAGCCTCGAGAATTTCTAGATTCGATTATTCTACAGCTTCAACCATTTTTCATAATGAAAAAG</canonical>
            <polymorphic>ATTATGGTTTTATTACTCCCCTTGCCTGTTCCATCCTCATGTTTTTTGTGCACATAATGAACTGATTTTGAAAATTATATTTTTTCAGTTTGAAATTCGAAATTTTAGGACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTTTTAAACATTTTGAATGCTTCGATCGTTTCGAGATATTATTTCATTGAAATTCTAAAATAACGGCTAACTTGGTGAAAACCCTTAAATGCTACACGAAAATAGCTTCGAGAGTTTCGATTATTCTACTGTTTCAATCATTTTTCGTTATGAGGATGTAAAATGAAAGTTAATCCAACCGCTAGATGGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTWATATTTCACAAAAACTGAGATAAATCAGCTCGAGACTAGAAGTTAGGAAAGGGTCTTTCTATCAAATTGTTCACGGTAATTCAAAGATGAAAGAGAAGGAAAAAAAAATTCAAATTAGAATTTTTCACTGTTTCATAATGGACTTTTCATTGATACCTCTACTAGTGGGTAGTCTTTCTTGAAAAATCATTCACATTTATGTTTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCGAATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGTCAAATTGTCACATTTTTCAAAAAATTATTGTTTCAAAAATGTTAAACTTTAAAAAAATTTCAAACGCTTCGATGGTATTTTGGAAATCATTGGAATTCTAAAATAACGGCTAACTTGGTGAAAACCTTTGAATGCTACACCAAAATAGCCTCGAGAATTTCTAGATTCGATTATTCTACAGCTTCAACCATTTTTCATAATGAAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATGAATCTACTGACGATGAA</pcr_primer_p1>
		<pcr_primer_p2>AAGTCCATTATGAAACAGTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAGCTCGAGACTAGAAGTTAGGAAAGGGTCTTTCTATCAAATTGTTCACGGTAATTCAAAGATGAAAGAGAAGGAAAAAAAAATTCAAATTAGAATTTTTCACTGTTTCATAATGGACTT</canonical_amplicon>
		<polymorphic_amplicon>AAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTWATATTTCACAAAAACTGAGATAAATCAGCTCGAGACTAGAAGTTAGGAAAGGGTCTTTCTATCAAATTGTTCACGGTAATTCAAAGATGAAAGAGAAGGAAAAAAAAATTCAAATTAGAATTTTTCACTGTTTCATAATGGACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33449</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>195300</contig_pos>
        <strand>+</strand>
        <context>AAAGAGAAGG[A/G]AAAAAAARTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGGTCTTTCTATCAAATTGTTCACGGTAATTCAAAGATGAAAGAGAAGG</left_flank>
        <right_flank>AAAAAAAATTCAAATTAGAATTTTTCACTGTTTCATAATGGACTTTTCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTAGGACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTTTTAAACATTTTGAATGCTTCGATCGTTTCGAGATATTATTTCATTGAAATTCTAAAATAACGGCTAACTTGGTGAAAACCCTTAAATGCTACACGAAAATAGCTTCGAGAGTTTCGATTATTCTACTGTTTCAATCATTTTTCGTTATGAGGATGTAAAATGAAAGTTAATCCAACCGCTAGATGGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAGCTCGAGACTAGAAGTTAGGAAAGGGTCTTTCTATCAAATTGTTCACGGTAATTCAAAGATGAAAGAGAAGGAAAAAAAAATTCAAATTAGAATTTTTCACTGTTTCATAATGGACTTTTCATTGATACCTCTACTAGTGGGTAGTCTTTCTTGAAAAATCATTCACATTTATGTTTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCGAATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGTCAAATTGTCACATTTTTCAAAAAATTATTGTTTCAAAAATGTTAAACTTTAAAAAAATTTCAAACGCTTCGATGGTATTTTGGAAATCATTGGAATTCTAAAATAACGGCTAACTTGGTGAAAACCTTTGAATGCTACACCAAAATAGCCTCGAGAATTTCTAGATTCGATTATTCTACAGCTTCAACCATTTTTCATAATGAAAAAGTTTGTAAAGTGGGGAATGATCCCACAAAGATTATCATTGAAAAATCCTTCGTTGTTGTATTAAAAAACAACAGTTCTGTTTCAAAAAAATTTAGTAAGGA</canonical>
            <polymorphic>AATTTTAGGACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTTTTAAACATTTTGAATGCTTCGATCGTTTCGAGATATTATTTCATTGAAATTCTAAAATAACGGCTAACTTGGTGAAAACCCTTAAATGCTACACGAAAATAGCTTCGAGAGTTTCGATTATTCTACTGTTTCAATCATTTTTCGTTATGAGGATGTAAAATGAAAGTTAATCCAACCGCTAGATGGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAGCTCGAGACTAGAAGTTAGGAAAGGGTCTTTCTATCAAATTGTTCACGGTAATTCAAAGATGAAAGAGAAGGRAAAAAAAATTCAAATTAGAATTTTTCACTGTTTCATAATGGACTTTTCATTGATACCTCTACTAGTGGGTAGTCTTTCTTGAAAAATCATTCACATTTATGTTTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCGAATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGTCAAATTGTCACATTTTTCAAAAAATTATTGTTTCAAAAATGTTAAACTTTAAAAAAATTTCAAACGCTTCGATGGTATTTTGGAAATCATTGGAATTCTAAAATAACGGCTAACTTGGTGAAAACCTTTGAATGCTACACCAAAATAGCCTCGAGAATTTCTAGATTCGATTATTCTACAGCTTCAACCATTTTTCATAATGAAAAAGTTTGTAAAGTGGGGAATGATCCCACAAAGATTATCATTGAAAAATCCTTCGTTGTTGTATTAAAAAACAACAGTTCTGTTTCAAAAAAATTTAGTAAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGGAAAGGGTCTTTCTATCAA</pcr_primer_p1>
		<pcr_primer_p2>ACTGAAATCCTGTTAACCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAGGAAAGGGTCTTTCTATCAAATTGTTCACGGTAATTCAAAGATGAAAGAGAAGGAAAAAAAAATTCAAATTAGAATTTTTCACTGTTTCATAATGGACTTTTCATTGATACCTCTACTAGTGGGTAGTCTTTCTTGAAAAATCATTCACATTTATGTTTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCGAATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGT</canonical_amplicon>
		<polymorphic_amplicon>TAGGAAAGGGTCTTTCTATCAAATTGTTCACGGTAATTCAAAGATGAAAGAGAAGGRAAAAAAAATTCAAATTAGAATTTTTCACTGTTTCATAATGGACTTTTCATTGATACCTCTACTAGTGGGTAGTCTTTCTTGAAAAATCATTCACATTTATGTTTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCGAATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33450</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>195308</contig_pos>
        <strand></strand>
        <context>GGRAAAAAAA[A/G]TTCAAATTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTATCAAATTGTTCACGGTAATTCAAAGATGAAAGAGAAGGAAAAAAAA</left_flank>
        <right_flank>TTCAAATTAGAATTTTTCACTGTTTCATAATGGACTTTTCATTGATACCT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTTTTAAACATTTTGAATGCTTCGATCGTTTCGAGATATTATTTCATTGAAATTCTAAAATAACGGCTAACTTGGTGAAAACCCTTAAATGCTACACGAAAATAGCTTCGAGAGTTTCGATTATTCTACTGTTTCAATCATTTTTCGTTATGAGGATGTAAAATGAAAGTTAATCCAACCGCTAGATGGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAGCTCGAGACTAGAAGTTAGGAAAGGGTCTTTCTATCAAATTGTTCACGGTAATTCAAAGATGAAAGAGAAGGAAAAAAAAATTCAAATTAGAATTTTTCACTGTTTCATAATGGACTTTTCATTGATACCTCTACTAGTGGGTAGTCTTTCTTGAAAAATCATTCACATTTATGTTTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCGAATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGTCAAATTGTCACATTTTTCAAAAAATTATTGTTTCAAAAATGTTAAACTTTAAAAAAATTTCAAACGCTTCGATGGTATTTTGGAAATCATTGGAATTCTAAAATAACGGCTAACTTGGTGAAAACCTTTGAATGCTACACCAAAATAGCCTCGAGAATTTCTAGATTCGATTATTCTACAGCTTCAACCATTTTTCATAATGAAAAAGTTTGTAAAGTGGGGAATGATCCCACAAAGATTATCATTGAAAAATCCTTCGTTGTTGTATTAAAAAACAACAGTTCTGTTTCAAAAAAATTTAGTAAGGATTGCCGAT</canonical>
            <polymorphic>GACAGAAAAAAAGCTTCTTGCTTCGATATTCCGCTAAAATTGGCACATTTTTCGAAAAACTGCTGTTTCCAAAAATGTTTAATTTTTAAACATTTTGAATGCTTCGATCGTTTCGAGATATTATTTCATTGAAATTCTAAAATAACGGCTAACTTGGTGAAAACCCTTAAATGCTACACGAAAATAGCTTCGAGAGTTTCGATTATTCTACTGTTTCAATCATTTTTCGTTATGAGGATGTAAAATGAAAGTTAATCCAACCGCTAGATGGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAGCTCGAGACTAGAAGTTAGGAAAGGGTCTTTCTATCAAATTGTTCACGGTAATTCAAAGATGAAAGAGAAGGAAAAAAAARTTCAAATTAGAATTTTTCACTGTTTCATAATGGACTTTTCATTGATACCTCTACTAGTGGGTAGTCTTTCTTGAAAAATCATTCACATTTATGTTTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCGAATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGTCAAATTGTCACATTTTTCAAAAAATTATTGTTTCAAAAATGTTAAACTTTAAAAAAATTTCAAACGCTTCGATGGTATTTTGGAAATCATTGGAATTCTAAAATAACGGCTAACTTGGTGAAAACCTTTGAATGCTACACCAAAATAGCCTCGAGAATTTCTAGATTCGATTATTCTACAGCTTCAACCATTTTTCATAATGAAAAAGTTTGTAAAGTGGGGAATGATCCCACAAAGATTATCATTGAAAAATCCTTCGTTGTTGTATTAAAAAACAACAGTTCTGTTTCAAAAAAATTTAGTAAGGATTGCCGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>199 148 140 132 128 94 62 38 21 19 12 7</canonical_bands>
                <polymorphic_bands>199 160 140 132 128 94 62 38 21 19 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>151 140 128 106 62 52 43 41 38 37 33 29 25 23 21 20 19 13 7 6 6</canonical_bands>
                <polymorphic_bands>151 140 128 106 62 52 43 41 38 37 35 33 25 23 21 20 19 13 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGGAAAGGGTCTTTCTATCAA</pcr_primer_p1>
		<pcr_primer_p2>ACTGAAATCCTGTTAACCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAGGAAAGGGTCTTTCTATCAAATTGTTCACGGTAATTCAAAGATGAAAGAGAAGGAAAAAAAAATTCAAATTAGAATTTTTCACTGTTTCATAATGGACTTTTCATTGATACCTCTACTAGTGGGTAGTCTTTCTTGAAAAATCATTCACATTTATGTTTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCGAATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGT</canonical_amplicon>
		<polymorphic_amplicon>TAGGAAAGGGTCTTTCTATCAAATTGTTCACGGTAATTCAAAGATGAAAGAGAAGGAAAAAAAARTTCAAATTAGAATTTTTCACTGTTTCATAATGGACTTTTCATTGATACCTCTACTAGTGGGTAGTCTTTCTTGAAAAATCATTCACATTTATGTTTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCGAATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33451</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>195453</contig_pos>
        <strand>+</strand>
        <context>TTCAAATTTC[A/G]AATTTCAGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTC</left_flank>
        <right_flank>AATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGTCAAATTGTCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGCTAACTTGGTGAAAACCCTTAAATGCTACACGAAAATAGCTTCGAGAGTTTCGATTATTCTACTGTTTCAATCATTTTTCGTTATGAGGATGTAAAATGAAAGTTAATCCAACCGCTAGATGGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAGCTCGAGACTAGAAGTTAGGAAAGGGTCTTTCTATCAAATTGTTCACGGTAATTCAAAGATGAAAGAGAAGGAAAAAAAAATTCAAATTAGAATTTTTCACTGTTTCATAATGGACTTTTCATTGATACCTCTACTAGTGGGTAGTCTTTCTTGAAAAATCATTCACATTTATGTTTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCGAATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGTCAAATTGTCACATTTTTCAAAAAATTATTGTTTCAAAAATGTTAAACTTTAAAAAAATTTCAAACGCTTCGATGGTATTTTGGAAATCATTGGAATTCTAAAATAACGGCTAACTTGGTGAAAACCTTTGAATGCTACACCAAAATAGCCTCGAGAATTTCTAGATTCGATTATTCTACAGCTTCAACCATTTTTCATAATGAAAAAGTTTGTAAAGTGGGGAATGATCCCACAAAGATTATCATTGAAAAATCCTTCGTTGTTGTATTAAAAAACAACAGTTCTGTTTCAAAAAAATTTAGTAAGGATTGCCGATTTATGAACTGTACTAGTTTTCACTGGTTTCTAAATGATTAATGTAATCTACACATTTCGAATCGATTTTTTAAAATTTCATATGTATGGCCAATTATTTTTAAGTTCACAATAACAACCAGAATCTCTACTTGCGACTGAAAAAT</canonical>
            <polymorphic>CGGCTAACTTGGTGAAAACCCTTAAATGCTACACGAAAATAGCTTCGAGAGTTTCGATTATTCTACTGTTTCAATCATTTTTCGTTATGAGGATGTAAAATGAAAGTTAATCCAACCGCTAGATGGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAGCTCGAGACTAGAAGTTAGGAAAGGGTCTTTCTATCAAATTGTTCACGGTAATTCAAAGATGAAAGAGAAGGAAAAAAAAATTCAAATTAGAATTTTTCACTGTTTCATAATGGACTTTTCATTGATACCTCTACTAGTGGGTAGTCTTTCTTGAAAAATCATTCACATTTATGTTTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCRAATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGTCAAATTGTCACATTTTTCAAAAAATTATTGTTTCAAAAATGTTAAACTTTAAAAAAATTTCAAACGCTTCGATGGTATTTTGGAAATCATTGGAATTCTAAAATAACGGCTAACTTGGTGAAAACCTTTGAATGCTACACCAAAATAGCCTCGAGAATTTCTAGATTCGATTATTCTACAGCTTCAACCATTTTTCATAATGAAAAAGTTTGTAAAGTGGGGAATGATCCCACAAAGATTATCATTGAAAAATCCTTCGTTGTTGTATTAAAAAACAACAGTTCTGTTTCAAAAAAATTTAGTAAGGATTGCCGATTTATGAACTGTACTAGTTTTCACTGGTTTCTAAATGATTAATGTAATCTACACATTTCGAATCGATTTTTTAAAATTTCATATGTATGGCCAATTATTTTTAAGTTCACAATAACAACCAGAATCTCTACTTGCGACTGAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>186 148 140 128 94 94 72 62 38 19 12 7</canonical_bands>
                <polymorphic_bands>186 148 140 128 101 94 72 62 38 19 12</polymorphic_bands>
            </assay>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>414 289 209 88</canonical_bands>
                <polymorphic_bands>703 209 88</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>221 206 155 110 82 82 68 46 16 9 5</canonical_bands>
                <polymorphic_bands>331 206 155 82 82 68 46 16 9 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTTGAAAAATCATTCACATTT</pcr_primer_p1>
		<pcr_primer_p2>ATTCAAAGGTTTTCACCAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTTGAAAAATCATTCACATTTATGTTTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCGAATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGTCAAATTGTCACATTTTTCAAAAAATTATTGTTTCAAAAATGTTAAACTTTAAAAAAATTTCAAACGCTTCGATGGTATTTTGGAAATCATTGGAATTCTAAAATAACGGCTAACTTGGTGAAAACCTTTGAAT</canonical_amplicon>
		<polymorphic_amplicon>TTCTTGAAAAATCATTCACATTTATGTTTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCRAATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGTCAAATTGTCACATTTTTCAAAAAATTATTGTTTCAAAAATGTTAAACTTTAAAAAAATTTCAAACGCTTCGATGGTATTTTGGAAATCATTGGAATTCTAAAATAACGGCTAACTTGGTGAAAACCTTTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33452</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>195465</contig_pos>
        <strand>+</strand>
        <context>ATTTCAGGAC[C/T]AAAAAAAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCGAATTTCAGGAC</left_flank>
        <right_flank>AAAAAAAATGGTTAACAGGATTTCAGTCAAATTGTCACATTTTTCAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAACCCTTAAATGCTACACGAAAATAGCTTCGAGAGTTTCGATTATTCTACTGTTTCAATCATTTTTCGTTATGAGGATGTAAAATGAAAGTTAATCCAACCGCTAGATGGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAGCTCGAGACTAGAAGTTAGGAAAGGGTCTTTCTATCAAATTGTTCACGGTAATTCAAAGATGAAAGAGAAGGAAAAAAAAATTCAAATTAGAATTTTTCACTGTTTCATAATGGACTTTTCATTGATACCTCTACTAGTGGGTAGTCTTTCTTGAAAAATCATTCACATTTATGTTTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCGAATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGTCAAATTGTCACATTTTTCAAAAAATTATTGTTTCAAAAATGTTAAACTTTAAAAAAATTTCAAACGCTTCGATGGTATTTTGGAAATCATTGGAATTCTAAAATAACGGCTAACTTGGTGAAAACCTTTGAATGCTACACCAAAATAGCCTCGAGAATTTCTAGATTCGATTATTCTACAGCTTCAACCATTTTTCATAATGAAAAAGTTTGTAAAGTGGGGAATGATCCCACAAAGATTATCATTGAAAAATCCTTCGTTGTTGTATTAAAAAACAACAGTTCTGTTTCAAAAAAATTTAGTAAGGATTGCCGATTTATGAACTGTACTAGTTTTCACTGGTTTCTAAATGATTAATGTAATCTACACATTTCGAATCGATTTTTTAAAATTTCATATGTATGGCCAATTATTTTTAAGTTCACAATAACAACCAGAATCTCTACTTGCGACTGAAAAATTATTTATTTTTA</canonical>
            <polymorphic>TGAAAACCCTTAAATGCTACACGAAAATAGCTTCGAGAGTTTCGATTATTCTACTGTTTCAATCATTTTTCGTTATGAGGATGTAAAATGAAAGTTAATCCAACCGCTAGATGGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAGCTCGAGACTAGAAGTTAGGAAAGGGTCTTTCTATCAAATTGTTCACGGTAATTCAAAGATGAAAGAGAAGGAAAAAAAAATTCAAATTAGAATTTTTCACTGTTTCATAATGGACTTTTCATTGATACCTCTACTAGTGGGTAGTCTTTCTTGAAAAATCATTCACATTTATGTTTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCGAATTTCAGGACYAAAAAAAATGGTTAACAGGATTTCAGTCAAATTGTCACATTTTTCAAAAAATTATTGTTTCAAAAATGTTAAACTTTAAAAAAATTTCAAACGCTTCGATGGTATTTTGGAAATCATTGGAATTCTAAAATAACGGCTAACTTGGTGAAAACCTTTGAATGCTACACCAAAATAGCCTCGAGAATTTCTAGATTCGATTATTCTACAGCTTCAACCATTTTTCATAATGAAAAAGTTTGTAAAGTGGGGAATGATCCCACAAAGATTATCATTGAAAAATCCTTCGTTGTTGTATTAAAAAACAACAGTTCTGTTTCAAAAAAATTTAGTAAGGATTGCCGATTTATGAACTGTACTAGTTTTCACTGGTTTCTAAATGATTAATGTAATCTACACATTTCGAATCGATTTTTTAAAATTTCATATGTATGGCCAATTATTTTTAAGTTCACAATAACAACCAGAATCTCTACTTGCGACTGAAAAATTATTTATTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTGAAAAATCATTCACATTT</pcr_primer_p1>
		<pcr_primer_p2>ATTCAAAGGTTTTCACCAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTTGAAAAATCATTCACATTTATGTTTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCGAATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGTCAAATTGTCACATTTTTCAAAAAATTATTGTTTCAAAAATGTTAAACTTTAAAAAAATTTCAAACGCTTCGATGGTATTTTGGAAATCATTGGAATTCTAAAATAACGGCTAACTTGGTGAAAACCTTTGAAT</canonical_amplicon>
		<polymorphic_amplicon>TTCTTGAAAAATCATTCACATTTATGTTTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCGAATTTCAGGACYAAAAAAAATGGTTAACAGGATTTCAGTCAAATTGTCACATTTTTCAAAAAATTATTGTTTCAAAAATGTTAAACTTTAAAAAAATTTCAAACGCTTCGATGGTATTTTGGAAATCATTGGAATTCTAAAATAACGGCTAACTTGGTGAAAACCTTTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33453</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>195498</contig_pos>
        <strand></strand>
        <context>TCAGTCAAAT[T/C]GYCACATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTTCGAATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGTCAAAT</left_flank>
        <right_flank>GTCACATTTTTCAAAAAATTATTGTTTCAAAAATGTTAAACTTTAAAAAA</right_flank>
        <qual_score>35</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAGAGTTTCGATTATTCTACTGTTTCAATCATTTTTCGTTATGAGGATGTAAAATGAAAGTTAATCCAACCGCTAGATGGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAGCTCGAGACTAGAAGTTAGGAAAGGGTCTTTCTATCAAATTGTTCACGGTAATTCAAAGATGAAAGAGAAGGAAAAAAAAATTCAAATTAGAATTTTTCACTGTTTCATAATGGACTTTTCATTGATACCTCTACTAGTGGGTAGTCTTTCTTGAAAAATCATTCACATTTATGTTTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCGAATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGTCAAATTGTCACATTTTTCAAAAAATTATTGTTTCAAAAATGTTAAACTTTAAAAAAATTTCAAACGCTTCGATGGTATTTTGGAAATCATTGGAATTCTAAAATAACGGCTAACTTGGTGAAAACCTTTGAATGCTACACCAAAATAGCCTCGAGAATTTCTAGATTCGATTATTCTACAGCTTCAACCATTTTTCATAATGAAAAAGTTTGTAAAGTGGGGAATGATCCCACAAAGATTATCATTGAAAAATCCTTCGTTGTTGTATTAAAAAACAACAGTTCTGTTTCAAAAAAATTTAGTAAGGATTGCCGATTTATGAACTGTACTAGTTTTCACTGGTTTCTAAATGATTAATGTAATCTACACATTTCGAATCGATTTTTTAAAATTTCATATGTATGGCCAATTATTTTTAAGTTCACAATAACAACCAGAATCTCTACTTGCGACTGAAAAATTATTTATTTTTACTTCAAAAAGGATTGATCAATGAAATGTTCAAA</canonical>
            <polymorphic>CGAGAGTTTCGATTATTCTACTGTTTCAATCATTTTTCGTTATGAGGATGTAAAATGAAAGTTAATCCAACCGCTAGATGGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAGCTCGAGACTAGAAGTTAGGAAAGGGTCTTTCTATCAAATTGTTCACGGTAATTCAAAGATGAAAGAGAAGGAAAAAAAAATTCAAATTAGAATTTTTCACTGTTTCATAATGGACTTTTCATTGATACCTCTACTAGTGGGTAGTCTTTCTTGAAAAATCATTCACATTTATGTTTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCGAATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGTCAAATYGTCACATTTTTCAAAAAATTATTGTTTCAAAAATGTTAAACTTTAAAAAAATTTCAAACGCTTCGATGGTATTTTGGAAATCATTGGAATTCTAAAATAACGGCTAACTTGGTGAAAACCTTTGAATGCTACACCAAAATAGCCTCGAGAATTTCTAGATTCGATTATTCTACAGCTTCAACCATTTTTCATAATGAAAAAGTTTGTAAAGTGGGGAATGATCCCACAAAGATTATCATTGAAAAATCCTTCGTTGTTGTATTAAAAAACAACAGTTCTGTTTCAAAAAAATTTAGTAAGGATTGCCGATTTATGAACTGTACTAGTTTTCACTGGTTTCTAAATGATTAATGTAATCTACACATTTCGAATCGATTTTTTAAAATTTCATATGTATGGCCAATTATTTTTAAGTTCACAATAACAACCAGAATCTCTACTTGCGACTGAAAAATTATTTATTTTTACTTCAAAAAGGATTGATCAATGAAATGTTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>140 128 106 94 93 62 51 48 41 38 33 29 25 23 20 19 18 13 7 6 6</canonical_bands>
                <polymorphic_bands>140 128 106 94 93 62 61 51 48 38 33 29 25 23 19 18 13 7 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTTGAAAAATCATTCACATTT</pcr_primer_p1>
		<pcr_primer_p2>ATTCAAAGGTTTTCACCAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTTGAAAAATCATTCACATTTATGTTTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCGAATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGTCAAATTGTCACATTTTTCAAAAAATTATTGTTTCAAAAATGTTAAACTTTAAAAAAATTTCAAACGCTTCGATGGTATTTTGGAAATCATTGGAATTCTAAAATAACGGCTAACTTGGTGAAAACCTTTGAAT</canonical_amplicon>
		<polymorphic_amplicon>TTCTTGAAAAATCATTCACATTTATGTTTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCGAATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGTCAAATYGTCACATTTTTCAAAAAATTATTGTTTCAAAAATGTTAAACTTTAAAAAAATTTCAAACGCTTCGATGGTATTTTGGAAATCATTGGAATTCTAAAATAACGGCTAACTTGGTGAAAACCTTTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33454</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>195500</contig_pos>
        <strand></strand>
        <context>AGTCAAATYG[T/C]CACATTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCGAATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGTCAAATTG</left_flank>
        <right_flank>CACATTTTTCAAAAAATTATTGTTTCAAAAATGTTAAACTTTAAAAAAAT</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGTTTCGATTATTCTACTGTTTCAATCATTTTTCGTTATGAGGATGTAAAATGAAAGTTAATCCAACCGCTAGATGGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAGCTCGAGACTAGAAGTTAGGAAAGGGTCTTTCTATCAAATTGTTCACGGTAATTCAAAGATGAAAGAGAAGGAAAAAAAAATTCAAATTAGAATTTTTCACTGTTTCATAATGGACTTTTCATTGATACCTCTACTAGTGGGTAGTCTTTCTTGAAAAATCATTCACATTTATGTTTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCGAATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGTCAAATTGTCACATTTTTCAAAAAATTATTGTTTCAAAAATGTTAAACTTTAAAAAAATTTCAAACGCTTCGATGGTATTTTGGAAATCATTGGAATTCTAAAATAACGGCTAACTTGGTGAAAACCTTTGAATGCTACACCAAAATAGCCTCGAGAATTTCTAGATTCGATTATTCTACAGCTTCAACCATTTTTCATAATGAAAAAGTTTGTAAAGTGGGGAATGATCCCACAAAGATTATCATTGAAAAATCCTTCGTTGTTGTATTAAAAAACAACAGTTCTGTTTCAAAAAAATTTAGTAAGGATTGCCGATTTATGAACTGTACTAGTTTTCACTGGTTTCTAAATGATTAATGTAATCTACACATTTCGAATCGATTTTTTAAAATTTCATATGTATGGCCAATTATTTTTAAGTTCACAATAACAACCAGAATCTCTACTTGCGACTGAAAAATTATTTATTTTTACTTCAAAAAGGATTGATCAATGAAATGTTCAAAAC</canonical>
            <polymorphic>AGAGTTTCGATTATTCTACTGTTTCAATCATTTTTCGTTATGAGGATGTAAAATGAAAGTTAATCCAACCGCTAGATGGTACGGAAAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAGCTCGAGACTAGAAGTTAGGAAAGGGTCTTTCTATCAAATTGTTCACGGTAATTCAAAGATGAAAGAGAAGGAAAAAAAAATTCAAATTAGAATTTTTCACTGTTTCATAATGGACTTTTCATTGATACCTCTACTAGTGGGTAGTCTTTCTTGAAAAATCATTCACATTTATGTTTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCGAATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGTCAAATTGYCACATTTTTCAAAAAATTATTGTTTCAAAAATGTTAAACTTTAAAAAAATTTCAAACGCTTCGATGGTATTTTGGAAATCATTGGAATTCTAAAATAACGGCTAACTTGGTGAAAACCTTTGAATGCTACACCAAAATAGCCTCGAGAATTTCTAGATTCGATTATTCTACAGCTTCAACCATTTTTCATAATGAAAAAGTTTGTAAAGTGGGGAATGATCCCACAAAGATTATCATTGAAAAATCCTTCGTTGTTGTATTAAAAAACAACAGTTCTGTTTCAAAAAAATTTAGTAAGGATTGCCGATTTATGAACTGTACTAGTTTTCACTGGTTTCTAAATGATTAATGTAATCTACACATTTCGAATCGATTTTTTAAAATTTCATATGTATGGCCAATTATTTTTAAGTTCACAATAACAACCAGAATCTCTACTTGCGACTGAAAAATTATTTATTTTTACTTCAAAAAGGATTGATCAATGAAATGTTCAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 421 77</canonical_bands>
                <polymorphic_bands>579 421</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>502 421 77</canonical_bands>
                <polymorphic_bands>579 421</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTTGAAAAATCATTCACATTT</pcr_primer_p1>
		<pcr_primer_p2>ATTCAAAGGTTTTCACCAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTTGAAAAATCATTCACATTTATGTTTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCGAATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGTCAAATTGTCACATTTTTCAAAAAATTATTGTTTCAAAAATGTTAAACTTTAAAAAAATTTCAAACGCTTCGATGGTATTTTGGAAATCATTGGAATTCTAAAATAACGGCTAACTTGGTGAAAACCTTTGAAT</canonical_amplicon>
		<polymorphic_amplicon>TTCTTGAAAAATCATTCACATTTATGTTTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCGAATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGTCAAATTGYCACATTTTTCAAAAAATTATTGTTTCAAAAATGTTAAACTTTAAAAAAATTTCAAACGCTTCGATGGTATTTTGGAAATCATTGGAATTCTAAAATAACGGCTAACTTGGTGAAAACCTTTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33455</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>195585</contig_pos>
        <strand></strand>
        <context>GAAATCATTG[G/A]AATTCTAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAAACTTTAAAAAAATTTCAAACGCTTCGATGGTATTTTGGAAATCATTG</left_flank>
        <right_flank>AATTCTAAAATAACGGCTAACTTGGTGAAAACCTTTGAATGCTACACCAA</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAGCTCGAGACTAGAAGTTAGGAAAGGGTCTTTCTATCAAATTGTTCACGGTAATTCAAAGATGAAAGAGAAGGAAAAAAAAATTCAAATTAGAATTTTTCACTGTTTCATAATGGACTTTTCATTGATACCTCTACTAGTGGGTAGTCTTTCTTGAAAAATCATTCACATTTATGTTTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCGAATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGTCAAATTGTCACATTTTTCAAAAAATTATTGTTTCAAAAATGTTAAACTTTAAAAAAATTTCAAACGCTTCGATGGTATTTTGGAAATCATTGGAATTCTAAAATAACGGCTAACTTGGTGAAAACCTTTGAATGCTACACCAAAATAGCCTCGAGAATTTCTAGATTCGATTATTCTACAGCTTCAACCATTTTTCATAATGAAAAAGTTTGTAAAGTGGGGAATGATCCCACAAAGATTATCATTGAAAAATCCTTCGTTGTTGTATTAAAAAACAACAGTTCTGTTTCAAAAAAATTTAGTAAGGATTGCCGATTTATGAACTGTACTAGTTTTCACTGGTTTCTAAATGATTAATGTAATCTACACATTTCGAATCGATTTTTTAAAATTTCATATGTATGGCCAATTATTTTTAAGTTCACAATAACAACCAGAATCTCTACTTGCGACTGAAAAATTATTTATTTTTACTTCAAAAAGGATTGATCAATGAAATGTTCAAAACTTGTGATCTCCAGTTGATCCGATCCGCTTAGCACAACTGCAAAAATAGTGATGTCAGATCACAGAAAAAAGTACAAGTTAAATAT</canonical>
            <polymorphic>AAGAATAATTAAAATGAATCTACTGACGATGAATTACCGTAAGCACTTTAACAAAATTCTTATCAAACCGTCAAATTCGAACCCATGTATCTTTCACTAGTGGACCATTTTTTTTATATTTCACAAAAACTGAGATAAATCAGCTCGAGACTAGAAGTTAGGAAAGGGTCTTTCTATCAAATTGTTCACGGTAATTCAAAGATGAAAGAGAAGGAAAAAAAAATTCAAATTAGAATTTTTCACTGTTTCATAATGGACTTTTCATTGATACCTCTACTAGTGGGTAGTCTTTCTTGAAAAATCATTCACATTTATGTTTTTTTGAATGAACTGATTGTGACAATAACTTTTTTCTGTTTCAAATTTCGAATTTCAGGACAAAAAAAAATGGTTAACAGGATTTCAGTCAAATTGTCACATTTTTCAAAAAATTATTGTTTCAAAAATGTTAAACTTTAAAAAAATTTCAAACGCTTCGATGGTATTTTGGAAATCATTGRAATTCTAAAATAACGGCTAACTTGGTGAAAACCTTTGAATGCTACACCAAAATAGCCTCGAGAATTTCTAGATTCGATTATTCTACAGCTTCAACCATTTTTCATAATGAAAAAGTTTGTAAAGTGGGGAATGATCCCACAAAGATTATCATTGAAAAATCCTTCGTTGTTGTATTAAAAAACAACAGTTCTGTTTCAAAAAAATTTAGTAAGGATTGCCGATTTATGAACTGTACTAGTTTTCACTGGTTTCTAAATGATTAATGTAATCTACACATTTCGAATCGATTTTTTAAAATTTCATATGTATGGCCAATTATTTTTAAGTTCACAATAACAACCAGAATCTCTACTTGCGACTGAAAAATTATTTATTTTTACTTCAAAAAGGATTGATCAATGAAATGTTCAAAACTTGTGATCTCCAGTTGATCCGATCCGCTTAGCACAACTGCAAAAATAGTGATGTCAGATCACAGAAAAAAGTACAAGTTAAATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>204 148 140 128 94 94 62 54 38 19 12 7</canonical_bands>
                <polymorphic_bands>204 148 140 128 100 94 94 54 19 12 7</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATGGTTAACAGGATTTCAGT</pcr_primer_p1>
		<pcr_primer_p2>CCCACTTTACAAACTTTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAAATGGTTAACAGGATTTCAGTCAAATTGTCACATTTTTCAAAAAATTATTGTTTCAAAAATGTTAAACTTTAAAAAAATTTCAAACGCTTCGATGGTATTTTGGAAATCATTGGAATTCTAAAATAACGGCTAACTTGGTGAAAACCTTTGAATGCTACACCAAAATAGCCTCGAGAATTTCTAGATTCGATTATTCTACAGCTTCAACCATTTTTCATAATGAAAAAGTTTGTAAAGTGGG</canonical_amplicon>
		<polymorphic_amplicon>AAAATGGTTAACAGGATTTCAGTCAAATTGTCACATTTTTCAAAAAATTATTGTTTCAAAAATGTTAAACTTTAAAAAAATTTCAAACGCTTCGATGGTATTTTGGAAATCATTGRAATTCTAAAATAACGGCTAACTTGGTGAAAACCTTTGAATGCTACACCAAAATAGCCTCGAGAATTTCTAGATTCGATTATTCTACAGCTTCAACCATTTTTCATAATGAAAAAGTTTGTAAAGTGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33456</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>197960</contig_pos>
        <strand></strand>
        <context>AGCTATAGGT[T/C]ATRGTAGTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTGTTTTTTTTTCAAATTTTCGAAAAGCTGTATCTACCGTAGCTATAGGT</left_flank>
        <right_flank>ATGGTAGTAGAGAGACTGACATGTGGAAACCCAAAAAAATTTCAATCTCT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACATTTCGTTCATTTGAGACACTCGTTGACGTTCACGCCTAGAATAATTATTTTGGTTTCATAGGAAAAATATAGGAAATTAAAGAATAGCGGTGACTAATCCAAAGAATACATTTCACCACGGGATTACTACAGTAACCAAATGAACTCATTAATTAGCTCTAATTGCAAGCCTATGGTAAAGTACAGTATCCTTGAATCTACAGTACTATTAAGTTTCCAAAGCTCACATATTAGCTCTCAGCCGCTTCGTTGGTTCCATCCTTGGATCCTTGTGATTCTTCGATTTGTTAGATCGAACCATTTTTCAAGTTGGTGAAGATGAGCAATGAAATGAAAGAGGGCGGATATCTAAAAAAGATGAGTATAACTCATTTCTAAAAGGACACACCACCTGTTACATAACCAGATGTTCCCTTCTCTAGACTCGAGTAAATATGAACTTTCTTGTTTTTTTTTCAAATTTTCGAAAAGCTGTATCTACCGTAGCTATAGGTTATGGTAGTAGAGAGACTGACATGTGGAAACCCAAAAAAATTTCAATCTCTTTTTCCCTTTTCGCTTAAGTCATTGTCGGTGTTGACAAAAATTATTGTTTCATACTTGTCACTTTTGAAAAATCAGCGTTTTCCCGACATTGTTGCACCGATCTCGACGACTAAAAGTTGCTCAAAAAAAATCTGAAACAGGAAAAACTGAATTTTGGTTTTATTACTTCCCTTGCCTATTTCACTCTCATGTTTTTTGCGTTGTACCCCTGAATGAAATAAGTTGTACCCCGAATTTTAGGCAGAAATTCTACCCAGTTGACCCTCCGAAATAACACCTTCGATAGTCTGCAATTGTGTTTGTTTTCCTCAAAAAACTACGAAAAAGATGTAAAAACAAAAATTCATCATGTTCAGAATCATATACTCAAATTGATCTCAATGACCCCTATGAGACTATCAATGCCCCCTGGGAGCATTTGGTCCGATGCCCCCTATGAGACATGGTGG</canonical>
            <polymorphic>GAACATTTCGTTCATTTGAGACACTCGTTGACGTTCACGCCTAGAATAATTATTTTGGTTTCATAGGAAAAATATAGGAAATTAAAGAATAGCGGTGACTAATCCAAAGAATACATTTCACCACGGGATTACTACAGTAACCAAATGAACTCATTAATTAGCTCTAATTGCAAGCCTATGGTAAAGTACAGTATCCTTGAATCTACAGTACTATTAAGTTTCCAAAGCTCACATATTAGCTCTCAGCCGCTTCGTTGGTTCCATCCTTGGATCCTTGTGATTCTTCGATTTGTTAGATCGAACCATTTTTCAAGTTGGTGAAGATGAGCAATGAAATGAAAGAGGGCGGATATCTAAAAAAGATGAGTATAACTCATTTCTAAAAGGACACACCACCTGTTACATAACCAGATGTTCCCTTCTCTAGACTCGAGTAAATATGAACTTTCTTGTTTTTTTTTCAAATTTTCGAAAAGCTGTATCTACCGTAGCTATAGGTYATGGTAGTAGAGAGACTGACATGTGGAAACCCAAAAAAATTTCAATCTCTTTTTCCCTTTTCGCTTAAGTCATTGTCGGTGTTGACAAAAATTATTGTTTCATACTTGTCACTTTTGAAAAATCAGCGTTTTCCCGACATTGTTGCACCGATCTCGACGACTAAAAGTTGCTCAAAAAAAATCTGAAACAGGAAAAACTGAATTTTGGTTTTATTACTTCCCTTGCCTATTTCACTCTCATGTTTTTTGCGTTGTACCCCTGAATGAAATAAGTTGTACCCCGAATTTTAGGCAGAAATTCTACCCAGTTGACCCTCCGAAATAACACCTTCGATAGTCTGCAATTGTGTTTGTTTTCCTCAAAAAACTACGAAAAAGATGTAAAAACAAAAATTCATCATGTTCAGAATCATATACTCAAATTGATCTCAATGACCCCTATGAGACTATCAATGCCCCCTGGGAGCATTTGGTCCGATGCCCCCTATGAGACATGGTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTCATTTCTAAAAGGACACAC</pcr_primer_p1>
		<pcr_primer_p2>TCAAAAGTGACAAGTATGAAACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AACTCATTTCTAAAAGGACACACCACCTGTTACATAACCAGATGTTCCCTTCTCTAGACTCGAGTAAATATGAACTTTCTTGTTTTTTTTTCAAATTTTCGAAAAGCTGTATCTACCGTAGCTATAGGTTATGGTAGTAGAGAGACTGACATGTGGAAACCCAAAAAAATTTCAATCTCTTTTTCCCTTTTCGCTTAAGTCATTGTCGGTGTTGACAAAAATTATTGTTTCATACTTGTCACTTTTGA</canonical_amplicon>
		<polymorphic_amplicon>AACTCATTTCTAAAAGGACACACCACCTGTTACATAACCAGATGTTCCCTTCTCTAGACTCGAGTAAATATGAACTTTCTTGTTTTTTTTTCAAATTTTCGAAAAGCTGTATCTACCGTAGCTATAGGTYATGGTAGTAGAGAGACTGACATGTGGAAACCCAAAAAAATTTCAATCTCTTTTTCCCTTTTCGCTTAAGTCATTGTCGGTGTTGACAAAAATTATTGTTTCATACTTGTCACTTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33457</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>197963</contig_pos>
        <strand></strand>
        <context>TATAGGTYAT[G/A]GTAGTAGAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTTTTTTCAAATTTTCGAAAAGCTGTATCTACCGTAGCTATAGGTTAT</left_flank>
        <right_flank>GTAGTAGAGAGACTGACATGTGGAAACCCAAAAAAATTTCAATCTCTTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTCGTTCATTTGAGACACTCGTTGACGTTCACGCCTAGAATAATTATTTTGGTTTCATAGGAAAAATATAGGAAATTAAAGAATAGCGGTGACTAATCCAAAGAATACATTTCACCACGGGATTACTACAGTAACCAAATGAACTCATTAATTAGCTCTAATTGCAAGCCTATGGTAAAGTACAGTATCCTTGAATCTACAGTACTATTAAGTTTCCAAAGCTCACATATTAGCTCTCAGCCGCTTCGTTGGTTCCATCCTTGGATCCTTGTGATTCTTCGATTTGTTAGATCGAACCATTTTTCAAGTTGGTGAAGATGAGCAATGAAATGAAAGAGGGCGGATATCTAAAAAAGATGAGTATAACTCATTTCTAAAAGGACACACCACCTGTTACATAACCAGATGTTCCCTTCTCTAGACTCGAGTAAATATGAACTTTCTTGTTTTTTTTTCAAATTTTCGAAAAGCTGTATCTACCGTAGCTATAGGTTATGGTAGTAGAGAGACTGACATGTGGAAACCCAAAAAAATTTCAATCTCTTTTTCCCTTTTCGCTTAAGTCATTGTCGGTGTTGACAAAAATTATTGTTTCATACTTGTCACTTTTGAAAAATCAGCGTTTTCCCGACATTGTTGCACCGATCTCGACGACTAAAAGTTGCTCAAAAAAAATCTGAAACAGGAAAAACTGAATTTTGGTTTTATTACTTCCCTTGCCTATTTCACTCTCATGTTTTTTGCGTTGTACCCCTGAATGAAATAAGTTGTACCCCGAATTTTAGGCAGAAATTCTACCCAGTTGACCCTCCGAAATAACACCTTCGATAGTCTGCAATTGTGTTTGTTTTCCTCAAAAAACTACGAAAAAGATGTAAAAACAAAAATTCATCATGTTCAGAATCATATACTCAAATTGATCTCAATGACCCCTATGAGACTATCAATGCCCCCTGGGAGCATTTGGTCCGATGCCCCCTATGAGACATGGTGGGAT</canonical>
            <polymorphic>CATTTCGTTCATTTGAGACACTCGTTGACGTTCACGCCTAGAATAATTATTTTGGTTTCATAGGAAAAATATAGGAAATTAAAGAATAGCGGTGACTAATCCAAAGAATACATTTCACCACGGGATTACTACAGTAACCAAATGAACTCATTAATTAGCTCTAATTGCAAGCCTATGGTAAAGTACAGTATCCTTGAATCTACAGTACTATTAAGTTTCCAAAGCTCACATATTAGCTCTCAGCCGCTTCGTTGGTTCCATCCTTGGATCCTTGTGATTCTTCGATTTGTTAGATCGAACCATTTTTCAAGTTGGTGAAGATGAGCAATGAAATGAAAGAGGGCGGATATCTAAAAAAGATGAGTATAACTCATTTCTAAAAGGACACACCACCTGTTACATAACCAGATGTTCCCTTCTCTAGACTCGAGTAAATATGAACTTTCTTGTTTTTTTTTCAAATTTTCGAAAAGCTGTATCTACCGTAGCTATAGGTTATRGTAGTAGAGAGACTGACATGTGGAAACCCAAAAAAATTTCAATCTCTTTTTCCCTTTTCGCTTAAGTCATTGTCGGTGTTGACAAAAATTATTGTTTCATACTTGTCACTTTTGAAAAATCAGCGTTTTCCCGACATTGTTGCACCGATCTCGACGACTAAAAGTTGCTCAAAAAAAATCTGAAACAGGAAAAACTGAATTTTGGTTTTATTACTTCCCTTGCCTATTTCACTCTCATGTTTTTTGCGTTGTACCCCTGAATGAAATAAGTTGTACCCCGAATTTTAGGCAGAAATTCTACCCAGTTGACCCTCCGAAATAACACCTTCGATAGTCTGCAATTGTGTTTGTTTTCCTCAAAAAACTACGAAAAAGATGTAAAAACAAAAATTCATCATGTTCAGAATCATATACTCAAATTGATCTCAATGACCCCTATGAGACTATCAATGCCCCCTGGGAGCATTTGGTCCGATGCCCCCTATGAGACATGGTGGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTCATTTCTAAAAGGACACAC</pcr_primer_p1>
		<pcr_primer_p2>TCAAAAGTGACAAGTATGAAACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AACTCATTTCTAAAAGGACACACCACCTGTTACATAACCAGATGTTCCCTTCTCTAGACTCGAGTAAATATGAACTTTCTTGTTTTTTTTTCAAATTTTCGAAAAGCTGTATCTACCGTAGCTATAGGTTATGGTAGTAGAGAGACTGACATGTGGAAACCCAAAAAAATTTCAATCTCTTTTTCCCTTTTCGCTTAAGTCATTGTCGGTGTTGACAAAAATTATTGTTTCATACTTGTCACTTTTGA</canonical_amplicon>
		<polymorphic_amplicon>AACTCATTTCTAAAAGGACACACCACCTGTTACATAACCAGATGTTCCCTTCTCTAGACTCGAGTAAATATGAACTTTCTTGTTTTTTTTTCAAATTTTCGAAAAGCTGTATCTACCGTAGCTATAGGTTATRGTAGTAGAGAGACTGACATGTGGAAACCCAAAAAAATTTCAATCTCTTTTTCCCTTTTCGCTTAAGTCATTGTCGGTGTTGACAAAAATTATTGTTTCATACTTGTCACTTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33458</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>198055</contig_pos>
        <strand></strand>
        <context>ACAAAAATTA[T/C]TGTTTCATAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATCTCTTTTTCCCTTTTCGCTTAAGTCATTGTCGGTGTTGACAAAAATTA</left_flank>
        <right_flank>TGTTTCATACTTGTCACTTTTGAAAAATCAGCGTTTTCCCGACATTGTTG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACTAATCCAAAGAATACATTTCACCACGGGATTACTACAGTAACCAAATGAACTCATTAATTAGCTCTAATTGCAAGCCTATGGTAAAGTACAGTATCCTTGAATCTACAGTACTATTAAGTTTCCAAAGCTCACATATTAGCTCTCAGCCGCTTCGTTGGTTCCATCCTTGGATCCTTGTGATTCTTCGATTTGTTAGATCGAACCATTTTTCAAGTTGGTGAAGATGAGCAATGAAATGAAAGAGGGCGGATATCTAAAAAAGATGAGTATAACTCATTTCTAAAAGGACACACCACCTGTTACATAACCAGATGTTCCCTTCTCTAGACTCGAGTAAATATGAACTTTCTTGTTTTTTTTTCAAATTTTCGAAAAGCTGTATCTACCGTAGCTATAGGTTATGGTAGTAGAGAGACTGACATGTGGAAACCCAAAAAAATTTCAATCTCTTTTTCCCTTTTCGCTTAAGTCATTGTCGGTGTTGACAAAAATTATTGTTTCATACTTGTCACTTTTGAAAAATCAGCGTTTTCCCGACATTGTTGCACCGATCTCGACGACTAAAAGTTGCTCAAAAAAAATCTGAAACAGGAAAAACTGAATTTTGGTTTTATTACTTCCCTTGCCTATTTCACTCTCATGTTTTTTGCGTTGTACCCCTGAATGAAATAAGTTGTACCCCGAATTTTAGGCAGAAATTCTACCCAGTTGACCCTCCGAAATAACACCTTCGATAGTCTGCAATTGTGTTTGTTTTCCTCAAAAAACTACGAAAAAGATGTAAAAACAAAAATTCATCATGTTCAGAATCATATACTCAAATTGATCTCAATGACCCCTATGAGACTATCAATGCCCCCTGGGAGCATTTGGTCCGATGCCCCCTATGAGACATGGTGGGATGCCCCCTAAGAGACAACTTCAGGATGCCCCCTATGAGTTAGTGACCCCTATGAGTGTATGCCCCCTTTGAGCACGATGCCCCCTATTTCGAT</canonical>
            <polymorphic>TGACTAATCCAAAGAATACATTTCACCACGGGATTACTACAGTAACCAAATGAACTCATTAATTAGCTCTAATTGCAAGCCTATGGTAAAGTACAGTATCCTTGAATCTACAGTACTATTAAGTTTCCAAAGCTCACATATTAGCTCTCAGCCGCTTCGTTGGTTCCATCCTTGGATCCTTGTGATTCTTCGATTTGTTAGATCGAACCATTTTTCAAGTTGGTGAAGATGAGCAATGAAATGAAAGAGGGCGGATATCTAAAAAAGATGAGTATAACTCATTTCTAAAAGGACACACCACCTGTTACATAACCAGATGTTCCCTTCTCTAGACTCGAGTAAATATGAACTTTCTTGTTTTTTTTTCAAATTTTCGAAAAGCTGTATCTACCGTAGCTATAGGTTATGGTAGTAGAGAGACTGACATGTGGAAACCCAAAAAAATTTCAATCTCTTTTTCCCTTTTCGCTTAAGTCATTGTCGGTGTTGACAAAAATTAYTGTTTCATACTTGTCACTTTTGAAAAATCAGCGTTTTCCCGACATTGTTGCACCGATCTCGACGACTAAAAGTTGCTCAAAAAAAATCTGAAACAGGAAAAACTGAATTTTGGTTTTATTACTTCCCTTGCCTATTTCACTCTCATGTTTTTTGCGTTGTACCCCTGAATGAAATAAGTTGTACCCCGAATTTTAGGCAGAAATTCTACCCAGTTGACCCTCCGAAATAACACCTTCGATAGTCTGCAATTGTGTTTGTTTTCCTCAAAAAACTACGAAAAAGATGTAAAAACAAAAATTCATCATGTTCAGAATCATATACTCAAATTGATCTCAATGACCCCTATGAGACTATCAATGCCCCCTGGGAGCATTTGGTCCGATGCCCCCTATGAGACATGGTGGGATGCCCCCTAAGAGACAACTTCAGGATGCCCCCTATGAGTTAGTGACCCCTATGAGTGTATGCCCCCTTTGAGCACGATGCCCCCTATTTCGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAATCTCTTTTTCCCTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CTAAAATTCGGGGTACAACTTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAATCTCTTTTTCCCTTTTCGCTTAAGTCATTGTCGGTGTTGACAAAAATTATTGTTTCATACTTGTCACTTTTGAAAAATCAGCGTTTTCCCGACATTGTTGCACCGATCTCGACGACTAAAAGTTGCTCAAAAAAAATCTGAAACAGGAAAAACTGAATTTTGGTTTTATTACTTCCCTTGCCTATTTCACTCTCATGTTTTTTGCGTTGTACCCCTGAATGAAATAAGTTGTACCCCGAATTTTAG</canonical_amplicon>
		<polymorphic_amplicon>TCAATCTCTTTTTCCCTTTTCGCTTAAGTCATTGTCGGTGTTGACAAAAATTAYTGTTTCATACTTGTCACTTTTGAAAAATCAGCGTTTTCCCGACATTGTTGCACCGATCTCGACGACTAAAAGTTGCTCAAAAAAAATCTGAAACAGGAAAAACTGAATTTTGGTTTTATTACTTCCCTTGCCTATTTCACTCTCATGTTTTTTGCGTTGTACCCCTGAATGAAATAAGTTGTACCCCGAATTTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33459</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>198134</contig_pos>
        <strand>+</strand>
        <context>AAAGTTGCTC[A/T]AAAAAAATCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGCGTTTTCCCGACATTGTTGCACCGATCTCGACGACTAAAAGTTGCTC</left_flank>
        <right_flank>AAAAAAATCTGAAACAGGAAAAACTGAATTTTGGTTTTATTACTTCCCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTATGGTAAAGTACAGTATCCTTGAATCTACAGTACTATTAAGTTTCCAAAGCTCACATATTAGCTCTCAGCCGCTTCGTTGGTTCCATCCTTGGATCCTTGTGATTCTTCGATTTGTTAGATCGAACCATTTTTCAAGTTGGTGAAGATGAGCAATGAAATGAAAGAGGGCGGATATCTAAAAAAGATGAGTATAACTCATTTCTAAAAGGACACACCACCTGTTACATAACCAGATGTTCCCTTCTCTAGACTCGAGTAAATATGAACTTTCTTGTTTTTTTTTCAAATTTTCGAAAAGCTGTATCTACCGTAGCTATAGGTTATGGTAGTAGAGAGACTGACATGTGGAAACCCAAAAAAATTTCAATCTCTTTTTCCCTTTTCGCTTAAGTCATTGTCGGTGTTGACAAAAATTATTGTTTCATACTTGTCACTTTTGAAAAATCAGCGTTTTCCCGACATTGTTGCACCGATCTCGACGACTAAAAGTTGCTCAAAAAAAATCTGAAACAGGAAAAACTGAATTTTGGTTTTATTACTTCCCTTGCCTATTTCACTCTCATGTTTTTTGCGTTGTACCCCTGAATGAAATAAGTTGTACCCCGAATTTTAGGCAGAAATTCTACCCAGTTGACCCTCCGAAATAACACCTTCGATAGTCTGCAATTGTGTTTGTTTTCCTCAAAAAACTACGAAAAAGATGTAAAAACAAAAATTCATCATGTTCAGAATCATATACTCAAATTGATCTCAATGACCCCTATGAGACTATCAATGCCCCCTGGGAGCATTTGGTCCGATGCCCCCTATGAGACATGGTGGGATGCCCCCTAAGAGACAACTTCAGGATGCCCCCTATGAGTTAGTGACCCCTATGAGTGTATGCCCCCTTTGAGCACGATGCCCCCTATTTCGATGACCCCTGGGAGTATGGGCCACCGTAAAAAGGTTAAAACATGTTTTTTTTTCAAAATTGAAAATTTGTATAATTTACTG</canonical>
            <polymorphic>CCTATGGTAAAGTACAGTATCCTTGAATCTACAGTACTATTAAGTTTCCAAAGCTCACATATTAGCTCTCAGCCGCTTCGTTGGTTCCATCCTTGGATCCTTGTGATTCTTCGATTTGTTAGATCGAACCATTTTTCAAGTTGGTGAAGATGAGCAATGAAATGAAAGAGGGCGGATATCTAAAAAAGATGAGTATAACTCATTTCTAAAAGGACACACCACCTGTTACATAACCAGATGTTCCCTTCTCTAGACTCGAGTAAATATGAACTTTCTTGTTTTTTTTTCAAATTTTCGAAAAGCTGTATCTACCGTAGCTATAGGTTATGGTAGTAGAGAGACTGACATGTGGAAACCCAAAAAAATTTCAATCTCTTTTTCCCTTTTCGCTTAAGTCATTGTCGGTGTTGACAAAAATTATTGTTTCATACTTGTCACTTTTGAAAAATCAGCGTTTTCCCGACATTGTTGCACCGATCTCGACGACTAAAAGTTGCTCWAAAAAAATCTGAAACAGGAAAAACTGAATTTTGGTTTTATTACTTCCCTTGCCTATTTCACTCTCATGTTTTTTGCGTTGTACCCCTGAATGAAATAAGTTGTACCCCGAATTTTAGGCAGAAATTCTACCCAGTTGACCCTCCGAAATAACACCTTCGATAGTCTGCAATTGTGTTTGTTTTCCTCAAAAAACTACGAAAAAGATGTAAAAACAAAAATTCATCATGTTCAGAATCATATACTCAAATTGATCTCAATGACCCCTATGAGACTATCAATGCCCCCTGGGAGCATTTGGTCCGATGCCCCCTATGAGACATGGTGGGATGCCCCCTAAGAGACAACTTCAGGATGCCCCCTATGAGTTAGTGACCCCTATGAGTGTATGCCCCCTTTGAGCACGATGCCCCCTATTTCGATGACCCCTGGGAGTATGGGCCACCGTAAAAAGGTTAAAACATGTTTTTTTTTCAAAATTGAAAATTTGTATAATTTACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAATCTCTTTTTCCCTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CTAAAATTCGGGGTACAACTTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAATCTCTTTTTCCCTTTTCGCTTAAGTCATTGTCGGTGTTGACAAAAATTATTGTTTCATACTTGTCACTTTTGAAAAATCAGCGTTTTCCCGACATTGTTGCACCGATCTCGACGACTAAAAGTTGCTCAAAAAAAATCTGAAACAGGAAAAACTGAATTTTGGTTTTATTACTTCCCTTGCCTATTTCACTCTCATGTTTTTTGCGTTGTACCCCTGAATGAAATAAGTTGTACCCCGAATTTTAG</canonical_amplicon>
		<polymorphic_amplicon>TCAATCTCTTTTTCCCTTTTCGCTTAAGTCATTGTCGGTGTTGACAAAAATTATTGTTTCATACTTGTCACTTTTGAAAAATCAGCGTTTTCCCGACATTGTTGCACCGATCTCGACGACTAAAAGTTGCTCWAAAAAAATCTGAAACAGGAAAAACTGAATTTTGGTTTTATTACTTCCCTTGCCTATTTCACTCTCATGTTTTTTGCGTTGTACCCCTGAATGAAATAAGTTGTACCCCGAATTTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33460</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>204604</contig_pos>
        <strand>+</strand>
        <context>TGATAAAAAA[A/G]ATTTTCGAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGTAAGTTTATTGAAATTTTTGTGGAATGTGATTTGGACTGATAAAAAA</left_flank>
        <right_flank>ATTTTCGAGCTGAAAAAATTTCGAAAAACTGTCTGACTCAAACGCTTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAACTTGTACGCCTGAATTTCTCAATTCGAGTTTGAAACAGAAATTTTAAAAAACGAATTCTCGATTTTCTTTTTTTTGAATTTTTAAATTGAACACTGAGATCGTTGTACGGAACACTGAAGCAGAAAAAAATTGGTCGAAAAATGGTGGAAAATGTTTTTTTTTTCAATTTTTAAGCCAAATTTTACAACGACATGCATAGAAAATTCAAAAACTTTGAAACTGTAATTTCCTGTGTTCATTGTATAAACAAAATTCAAAAAAAGAACCATTTTCTATATTTTGTTAGAAACAGAAGTTAAAATTTTAGATGTGCTGGTACTTGAAAAAAGTTCCCTTGGATTACTGTAAAAAATAAAAAATACTAATGGACAGGTGTTTTGAATACCAGGAGTTGTCGGACATTTCCAGCATTTTTGAAATTTCGAAGATTATTCTAGGCTTTTGTAAGTTTATTGAAATTTTTGTGGAATGTGATTTGGACTGATAAAAAAAATTTTCGAGCTGAAAAAATTTCGAAAAACTGTCTGACTCAAACGCTTATTAATTTTACACAGTACTAAACTAGAGGCGTAAAACTTTGAAACAGCAATTTCAGTTTTTCCTTTGGCTATATTTTCGAGTTTAAAAGATTGATGCATATCCCCAATTCGAAATTTGGAATTTAAAAAAAACACGGAATCCAATGATTGCTCAATTTAGCATAAAAATGAGTTTTCCTAAGTCACAGGAAAACACAAACAAATACAATCCCCTCGTGTGATCAAGAAAAATCGTATATCTGAAGTTCTCGATTCGAGTTTGAAACAGAAAATTAAAAAAAAGCGAAACCTCGATGTTCTTTCTCCAATAACTTTTTATAATTTTTTTTCATTTTCAAAACTGATCAACTTTGAAATTTTGACTTTCATCGAAAGATTGATCGATTCCTTGGTTTTTTGTAAATGTTGTTTTTTGGTATTTTTGGAGCTTTCCGAATTTTCAGCAGCTTTTGG</canonical>
            <polymorphic>AAAAAAACTTGTACGCCTGAATTTCTCAATTCGAGTTTGAAACAGAAATTTTAAAAAACGAATTCTCGATTTTCTTTTTTTTGAATTTTTAAATTGAACACTGAGATCGTTGTACGGAACACTGAAGCAGAAAAAAATTGGTCGAAAAATGGTGGAAAATGTTTTTTTTTTCAATTTTTAAGCCAAATTTTACAACGACATGCATAGAAAATTCAAAAACTTTGAAACTGTAATTTCCTGTGTTCATTGTATAAACAAAATTCAAAAAAAGAACCATTTTCTATATTTTGTTAGAAACAGAAGTTAAAATTTTAGATGTGCTGGTACTTGAAAAAAGTTCCCTTGGATTACTGTAAAAAATAAAAAATACTAATGGACAGGTGTTTTGAATACCAGGAGTTGTCGGACATTTCCAGCATTTTTGAAATTTCGAAGATTATTCTAGGCTTTTGTAAGTTTATTGAAATTTTTGTGGAATGTGATTTGGACTGATAAAAAARATTTTCGAGCTGAAAAAATTTCGAAAAACTGTCTGACTCAAACGCTTATTAATTTTACACAGTACTAAACTAGAGGCGTAAAACTTTGAAACAGCAATTTCAGTTTTTCCTTTGGCTATATTTTCGAGTTTAAAAGATTGATGCATATCCCCAATTCGAAATTTGGAATTTAAAAAAAACACGGAATCCAATGATTGCTCAATTTAGCATAAAAATGAGTTTTCCTAAGTCACAGGAAAACACAAACAAATACAATCCCCTCGTGTGATCAAGAAAAATCGTATATCTGAAGTTCTCGATTCGAGTTTGAAACAGAAAATTAAAAAAAAGCGAAACCTCGATGTTCTTTCTCCAATAACTTTTTATAATTTTTTTTCATTTTCAAAACTGATCAACTTTGAAATTTTGACTTTCATCGAAAGATTGATCGATTCCTTGGTTTTTTGTAAATGTTGTTTTTTGGTATTTTTGGAGCTTTCCGAATTTTCAGCAGCTTTTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>235 143 118 102 80 49 49 39 35 27 24 23 19 19 17 14 7</canonical_bands>
                <polymorphic_bands>235 143 118 102 80 52 49 49 39 27 24 23 19 19 14 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>118 117 80 57 49 49 45 44 39 37 35 35 34 34 27 24 23 22 19 19 19 17 14 13 8 8 7 7</canonical_bands>
                <polymorphic_bands>118 117 80 57 52 49 49 45 44 39 37 35 34 34 27 24 23 22 19 19 19 14 13 8 8 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTTAGATGTGCTGGTACTTG</pcr_primer_p1>
		<pcr_primer_p2>AAATTAATAAGCGTTTGAGTCAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATTTTAGATGTGCTGGTACTTGAAAAAAGTTCCCTTGGATTACTGTAAAAAATAAAAAATACTAATGGACAGGTGTTTTGAATACCAGGAGTTGTCGGACATTTCCAGCATTTTTGAAATTTCGAAGATTATTCTAGGCTTTTGTAAGTTTATTGAAATTTTTGTGGAATGTGATTTGGACTGATAAAAAAAATTTTCGAGCTGAAAAAATTTCGAAAAACTGTCTGACTCAAACGCTTATTAATTT</canonical_amplicon>
		<polymorphic_amplicon>AATTTTAGATGTGCTGGTACTTGAAAAAAGTTCCCTTGGATTACTGTAAAAAATAAAAAATACTAATGGACAGGTGTTTTGAATACCAGGAGTTGTCGGACATTTCCAGCATTTTTGAAATTTCGAAGATTATTCTAGGCTTTTGTAAGTTTATTGAAATTTTTGTGGAATGTGATTTGGACTGATAAAAAARATTTTCGAGCTGAAAAAATTTCGAAAAACTGTCTGACTCAAACGCTTATTAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33461</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>204706</contig_pos>
        <strand>+</strand>
        <context>CAGCAATTTC[A/G]GTTTTTYCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTACACAGTACTAAACTAGAGGCGTAAAACTTTGAAACAGCAATTTC</left_flank>
        <right_flank>GTTTTTCCTTTGGCTATATTTTCGAGTTTAAAAGATTGATGCATATCCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGATCGTTGTACGGAACACTGAAGCAGAAAAAAATTGGTCGAAAAATGGTGGAAAATGTTTTTTTTTTCAATTTTTAAGCCAAATTTTACAACGACATGCATAGAAAATTCAAAAACTTTGAAACTGTAATTTCCTGTGTTCATTGTATAAACAAAATTCAAAAAAAGAACCATTTTCTATATTTTGTTAGAAACAGAAGTTAAAATTTTAGATGTGCTGGTACTTGAAAAAAGTTCCCTTGGATTACTGTAAAAAATAAAAAATACTAATGGACAGGTGTTTTGAATACCAGGAGTTGTCGGACATTTCCAGCATTTTTGAAATTTCGAAGATTATTCTAGGCTTTTGTAAGTTTATTGAAATTTTTGTGGAATGTGATTTGGACTGATAAAAAAAATTTTCGAGCTGAAAAAATTTCGAAAAACTGTCTGACTCAAACGCTTATTAATTTTACACAGTACTAAACTAGAGGCGTAAAACTTTGAAACAGCAATTTCAGTTTTTCCTTTGGCTATATTTTCGAGTTTAAAAGATTGATGCATATCCCCAATTCGAAATTTGGAATTTAAAAAAAACACGGAATCCAATGATTGCTCAATTTAGCATAAAAATGAGTTTTCCTAAGTCACAGGAAAACACAAACAAATACAATCCCCTCGTGTGATCAAGAAAAATCGTATATCTGAAGTTCTCGATTCGAGTTTGAAACAGAAAATTAAAAAAAAGCGAAACCTCGATGTTCTTTCTCCAATAACTTTTTATAATTTTTTTTCATTTTCAAAACTGATCAACTTTGAAATTTTGACTTTCATCGAAAGATTGATCGATTCCTTGGTTTTTTGTAAATGTTGTTTTTTGGTATTTTTGGAGCTTTCCGAATTTTCAGCAGCTTTTGGGATTTTGGAGATTTTTGGAATGTGACATTGTGGGAGGCGGAAGTAAAAGCGGAAGGGCGGAAGTGAAGGCGGAAGGCGAAAGTTGGCGGTAGGCGGAAGTGA</canonical>
            <polymorphic>GAGATCGTTGTACGGAACACTGAAGCAGAAAAAAATTGGTCGAAAAATGGTGGAAAATGTTTTTTTTTTCAATTTTTAAGCCAAATTTTACAACGACATGCATAGAAAATTCAAAAACTTTGAAACTGTAATTTCCTGTGTTCATTGTATAAACAAAATTCAAAAAAAGAACCATTTTCTATATTTTGTTAGAAACAGAAGTTAAAATTTTAGATGTGCTGGTACTTGAAAAAAGTTCCCTTGGATTACTGTAAAAAATAAAAAATACTAATGGACAGGTGTTTTGAATACCAGGAGTTGTCGGACATTTCCAGCATTTTTGAAATTTCGAAGATTATTCTAGGCTTTTGTAAGTTTATTGAAATTTTTGTGGAATGTGATTTGGACTGATAAAAAAAATTTTCGAGCTGAAAAAATTTCGAAAAACTGTCTGACTCAAACGCTTATTAATTTTACACAGTACTAAACTAGAGGCGTAAAACTTTGAAACAGCAATTTCRGTTTTTCCTTTGGCTATATTTTCGAGTTTAAAAGATTGATGCATATCCCCAATTCGAAATTTGGAATTTAAAAAAAACACGGAATCCAATGATTGCTCAATTTAGCATAAAAATGAGTTTTCCTAAGTCACAGGAAAACACAAACAAATACAATCCCCTCGTGTGATCAAGAAAAATCGTATATCTGAAGTTCTCGATTCGAGTTTGAAACAGAAAATTAAAAAAAAGCGAAACCTCGATGTTCTTTCTCCAATAACTTTTTATAATTTTTTTTCATTTTCAAAACTGATCAACTTTGAAATTTTGACTTTCATCGAAAGATTGATCGATTCCTTGGTTTTTTGTAAATGTTGTTTTTTGGTATTTTTGGAGCTTTCCGAATTTTCAGCAGCTTTTGGGATTTTGGAGATTTTTGGAATGTGACATTGTGGGAGGCGGAAGTAAAAGCGGAAGGGCGGAAGTGAAGGCGGAAGGCGAAAGTTGGCGGTAGGCGGAAGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAACGCTTATTAATTTTACACA</pcr_primer_p1>
		<pcr_primer_p2>ATATACGATTTTTCTTGATCACAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAAACGCTTATTAATTTTACACAGTACTAAACTAGAGGCGTAAAACTTTGAAACAGCAATTTCAGTTTTTCCTTTGGCTATATTTTCGAGTTTAAAAGATTGATGCATATCCCCAATTCGAAATTTGGAATTTAAAAAAAACACGGAATCCAATGATTGCTCAATTTAGCATAAAAATGAGTTTTCCTAAGTCACAGGAAAACACAAACAAATACAATCCCCTCGTGTGATCAAGAAAAATCGTATAT</canonical_amplicon>
		<polymorphic_amplicon>CAAACGCTTATTAATTTTACACAGTACTAAACTAGAGGCGTAAAACTTTGAAACAGCAATTTCRGTTTTTCCTTTGGCTATATTTTCGAGTTTAAAAGATTGATGCATATCCCCAATTCGAAATTTGGAATTTAAAAAAAACACGGAATCCAATGATTGCTCAATTTAGCATAAAAATGAGTTTTCCTAAGTCACAGGAAAACACAAACAAATACAATCCCCTCGTGTGATCAAGAAAAATCGTATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33462</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>204713</contig_pos>
        <strand>+</strand>
        <context>TTCRGTTTTT[C/T]CTTTGGCTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAGTACTAAACTAGAGGCGTAAAACTTTGAAACAGCAATTTCAGTTTTT</left_flank>
        <right_flank>CTTTGGCTATATTTTCGAGTTTAAAAGATTGATGCATATCCCCAATTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTACGGAACACTGAAGCAGAAAAAAATTGGTCGAAAAATGGTGGAAAATGTTTTTTTTTTCAATTTTTAAGCCAAATTTTACAACGACATGCATAGAAAATTCAAAAACTTTGAAACTGTAATTTCCTGTGTTCATTGTATAAACAAAATTCAAAAAAAGAACCATTTTCTATATTTTGTTAGAAACAGAAGTTAAAATTTTAGATGTGCTGGTACTTGAAAAAAGTTCCCTTGGATTACTGTAAAAAATAAAAAATACTAATGGACAGGTGTTTTGAATACCAGGAGTTGTCGGACATTTCCAGCATTTTTGAAATTTCGAAGATTATTCTAGGCTTTTGTAAGTTTATTGAAATTTTTGTGGAATGTGATTTGGACTGATAAAAAAAATTTTCGAGCTGAAAAAATTTCGAAAAACTGTCTGACTCAAACGCTTATTAATTTTACACAGTACTAAACTAGAGGCGTAAAACTTTGAAACAGCAATTTCAGTTTTTCCTTTGGCTATATTTTCGAGTTTAAAAGATTGATGCATATCCCCAATTCGAAATTTGGAATTTAAAAAAAACACGGAATCCAATGATTGCTCAATTTAGCATAAAAATGAGTTTTCCTAAGTCACAGGAAAACACAAACAAATACAATCCCCTCGTGTGATCAAGAAAAATCGTATATCTGAAGTTCTCGATTCGAGTTTGAAACAGAAAATTAAAAAAAAGCGAAACCTCGATGTTCTTTCTCCAATAACTTTTTATAATTTTTTTTCATTTTCAAAACTGATCAACTTTGAAATTTTGACTTTCATCGAAAGATTGATCGATTCCTTGGTTTTTTGTAAATGTTGTTTTTTGGTATTTTTGGAGCTTTCCGAATTTTCAGCAGCTTTTGGGATTTTGGAGATTTTTGGAATGTGACATTGTGGGAGGCGGAAGTAAAAGCGGAAGGGCGGAAGTGAAGGCGGAAGGCGAAAGTTGGCGGTAGGCGGAAGTGAAGTGACG</canonical>
            <polymorphic>TTGTACGGAACACTGAAGCAGAAAAAAATTGGTCGAAAAATGGTGGAAAATGTTTTTTTTTTCAATTTTTAAGCCAAATTTTACAACGACATGCATAGAAAATTCAAAAACTTTGAAACTGTAATTTCCTGTGTTCATTGTATAAACAAAATTCAAAAAAAGAACCATTTTCTATATTTTGTTAGAAACAGAAGTTAAAATTTTAGATGTGCTGGTACTTGAAAAAAGTTCCCTTGGATTACTGTAAAAAATAAAAAATACTAATGGACAGGTGTTTTGAATACCAGGAGTTGTCGGACATTTCCAGCATTTTTGAAATTTCGAAGATTATTCTAGGCTTTTGTAAGTTTATTGAAATTTTTGTGGAATGTGATTTGGACTGATAAAAAAAATTTTCGAGCTGAAAAAATTTCGAAAAACTGTCTGACTCAAACGCTTATTAATTTTACACAGTACTAAACTAGAGGCGTAAAACTTTGAAACAGCAATTTCAGTTTTTYCTTTGGCTATATTTTCGAGTTTAAAAGATTGATGCATATCCCCAATTCGAAATTTGGAATTTAAAAAAAACACGGAATCCAATGATTGCTCAATTTAGCATAAAAATGAGTTTTCCTAAGTCACAGGAAAACACAAACAAATACAATCCCCTCGTGTGATCAAGAAAAATCGTATATCTGAAGTTCTCGATTCGAGTTTGAAACAGAAAATTAAAAAAAAGCGAAACCTCGATGTTCTTTCTCCAATAACTTTTTATAATTTTTTTTCATTTTCAAAACTGATCAACTTTGAAATTTTGACTTTCATCGAAAGATTGATCGATTCCTTGGTTTTTTGTAAATGTTGTTTTTTGGTATTTTTGGAGCTTTCCGAATTTTCAGCAGCTTTTGGGATTTTGGAGATTTTTGGAATGTGACATTGTGGGAGGCGGAAGTAAAAGCGGAAGGGCGGAAGTGAAGGCGGAAGGCGAAAGTTGGCGGTAGGCGGAAGTGAAGTGACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAACGCTTATTAATTTTACACA</pcr_primer_p1>
		<pcr_primer_p2>ATATACGATTTTTCTTGATCACAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAAACGCTTATTAATTTTACACAGTACTAAACTAGAGGCGTAAAACTTTGAAACAGCAATTTCAGTTTTTCCTTTGGCTATATTTTCGAGTTTAAAAGATTGATGCATATCCCCAATTCGAAATTTGGAATTTAAAAAAAACACGGAATCCAATGATTGCTCAATTTAGCATAAAAATGAGTTTTCCTAAGTCACAGGAAAACACAAACAAATACAATCCCCTCGTGTGATCAAGAAAAATCGTATAT</canonical_amplicon>
		<polymorphic_amplicon>CAAACGCTTATTAATTTTACACAGTACTAAACTAGAGGCGTAAAACTTTGAAACAGCAATTTCAGTTTTTYCTTTGGCTATATTTTCGAGTTTAAAAGATTGATGCATATCCCCAATTCGAAATTTGGAATTTAAAAAAAACACGGAATCCAATGATTGCTCAATTTAGCATAAAAATGAGTTTTCCTAAGTCACAGGAAAACACAAACAAATACAATCCCCTCGTGTGATCAAGAAAAATCGTATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33463</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>204857</contig_pos>
        <strand>+</strand>
        <context>CAAACAAATA[C/T]AATCCCCTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTAGCATAAAAATGAGTTTTCCTAAGTCACAGGAAAACACAAACAAATA</left_flank>
        <right_flank>AATCCCCTCGTGTGATCAAGAAAAATCGTATATCTGAAGTTCTCGATTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAAAATTCAAAAAAAGAACCATTTTCTATATTTTGTTAGAAACAGAAGTTAAAATTTTAGATGTGCTGGTACTTGAAAAAAGTTCCCTTGGATTACTGTAAAAAATAAAAAATACTAATGGACAGGTGTTTTGAATACCAGGAGTTGTCGGACATTTCCAGCATTTTTGAAATTTCGAAGATTATTCTAGGCTTTTGTAAGTTTATTGAAATTTTTGTGGAATGTGATTTGGACTGATAAAAAAAATTTTCGAGCTGAAAAAATTTCGAAAAACTGTCTGACTCAAACGCTTATTAATTTTACACAGTACTAAACTAGAGGCGTAAAACTTTGAAACAGCAATTTCAGTTTTTCCTTTGGCTATATTTTCGAGTTTAAAAGATTGATGCATATCCCCAATTCGAAATTTGGAATTTAAAAAAAACACGGAATCCAATGATTGCTCAATTTAGCATAAAAATGAGTTTTCCTAAGTCACAGGAAAACACAAACAAATACAATCCCCTCGTGTGATCAAGAAAAATCGTATATCTGAAGTTCTCGATTCGAGTTTGAAACAGAAAATTAAAAAAAAGCGAAACCTCGATGTTCTTTCTCCAATAACTTTTTATAATTTTTTTTCATTTTCAAAACTGATCAACTTTGAAATTTTGACTTTCATCGAAAGATTGATCGATTCCTTGGTTTTTTGTAAATGTTGTTTTTTGGTATTTTTGGAGCTTTCCGAATTTTCAGCAGCTTTTGGGATTTTGGAGATTTTTGGAATGTGACATTGTGGGAGGCGGAAGTAAAAGCGGAAGGGCGGAAGTGAAGGCGGAAGGCGAAAGTTGGCGGTAGGCGGAAGTGAAGTGACGTTTGCAGCAGAAGTTCGGAGTCTAGAAACTGGAAACCACTGTTTTTCAAACTTTTCATTGCTTTTTATAAAGTTGAGATATTTCAATAATTCACAGAAAAACGCAAAAAGGAGTATTTTAATTTAAAAAACTCGTATACACTCG</canonical>
            <polymorphic>AACAAAATTCAAAAAAAGAACCATTTTCTATATTTTGTTAGAAACAGAAGTTAAAATTTTAGATGTGCTGGTACTTGAAAAAAGTTCCCTTGGATTACTGTAAAAAATAAAAAATACTAATGGACAGGTGTTTTGAATACCAGGAGTTGTCGGACATTTCCAGCATTTTTGAAATTTCGAAGATTATTCTAGGCTTTTGTAAGTTTATTGAAATTTTTGTGGAATGTGATTTGGACTGATAAAAAAAATTTTCGAGCTGAAAAAATTTCGAAAAACTGTCTGACTCAAACGCTTATTAATTTTACACAGTACTAAACTAGAGGCGTAAAACTTTGAAACAGCAATTTCAGTTTTTCCTTTGGCTATATTTTCGAGTTTAAAAGATTGATGCATATCCCCAATTCGAAATTTGGAATTTAAAAAAAACACGGAATCCAATGATTGCTCAATTTAGCATAAAAATGAGTTTTCCTAAGTCACAGGAAAACACAAACAAATAYAATCCCCTCGTGTGATCAAGAAAAATCGTATATCTGAAGTTCTCGATTCGAGTTTGAAACAGAAAATTAAAAAAAAGCGAAACCTCGATGTTCTTTCTCCAATAACTTTTTATAATTTTTTTTCATTTTCAAAACTGATCAACTTTGAAATTTTGACTTTCATCGAAAGATTGATCGATTCCTTGGTTTTTTGTAAATGTTGTTTTTTGGTATTTTTGGAGCTTTCCGAATTTTCAGCAGCTTTTGGGATTTTGGAGATTTTTGGAATGTGACATTGTGGGAGGCGGAAGTAAAAGCGGAAGGGCGGAAGTGAAGGCGGAAGGCGAAAGTTGGCGGTAGGCGGAAGTGAAGTGACGTTTGCAGCAGAAGTTCGGAGTCTAGAAACTGGAAACCACTGTTTTTCAAACTTTTCATTGCTTTTTATAAAGTTGAGATATTTCAATAATTCACAGAAAAACGCAAAAAGGAGTATTTTAATTTAAAAAACTCGTATACACTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCGAGTTTAAAAGATTGATG</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGTTATTGGAGAAAGAACAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTTTCGAGTTTAAAAGATTGATGCATATCCCCAATTCGAAATTTGGAATTTAAAAAAAACACGGAATCCAATGATTGCTCAATTTAGCATAAAAATGAGTTTTCCTAAGTCACAGGAAAACACAAACAAATACAATCCCCTCGTGTGATCAAGAAAAATCGTATATCTGAAGTTCTCGATTCGAGTTTGAAACAGAAAATTAAAAAAAAGCGAAACCTCGATGTTCTTTCTCCAATAACTTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCGAGTTTAAAAGATTGATGCATATCCCCAATTCGAAATTTGGAATTTAAAAAAAACACGGAATCCAATGATTGCTCAATTTAGCATAAAAATGAGTTTTCCTAAGTCACAGGAAAACACAAACAAATAYAATCCCCTCGTGTGATCAAGAAAAATCGTATATCTGAAGTTCTCGATTCGAGTTTGAAACAGAAAATTAAAAAAAAGCGAAACCTCGATGTTCTTTCTCCAATAACTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33464</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>249158</contig_pos>
        <strand></strand>
        <context>GATCAGAACT[C/A]GGTGACTGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TCAGAGTAATCCATTATTCGAATCGAAATTCTTGGTTCCTGATCAGAACT</left_flank>
        <right_flank>GGTGACTGAAAATTTATTTTTCGATTGATTATATCATCAATATTATACTA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTATTATCTGGTTTCGGTGTGATTTGGGGCGGAGTTTCAGGCGGTGTTGCGACTGTCTGCTAGAGAAAATTGGTTTTAACTTTTTGAATTTTCATCTACTCAGACGAAATGAACACTCATGCCGGCACAAAAAGGAAAAAGGCGTACACGCCGCAGGAGAAATTGTTTTTTCAGGCCGGCAAGGTTTTTTGAAAGTCACGCCGGCATGGAAAAGCTCTTTCAATCCTCCCCCTTCCCTCCGCAGCTGATGAATCAATAAAAATACACTATTTATTAAAGAGAAATAACTGAAAAGTAACATATTTCAAAAAGTGATAAGAATTAGGGAATTTCATTTGAAGTACAATTTGCGAGAAGTGGATAAGGCCGAAAAATAAATCGTTTTCAAATCCTTCACAATTTCGTCTGATTTGAAGCAAATTATGTTGATTCGACTTTGTTCCGTTTTCAGAGTAATCCATTATTCGAATCGAAATTCTTGGTTCCTGATCAGAACTCGGTGACTGAAAATTTATTTTTCGATTGATTATATCATCAATATTATACTAACCAAACTGCCGATCTTTTAAGATTACAATATCCGTGAGAATTGGGTTCCCACTTGTTGTATCCGACTAGTTGATCTTCCATTTCATCGAAGTGAGAAAGAAATATTATGCAGACAATCAAGAGTATCTGAAAAATCTGAAAACTTATATTTTTATGAAAACCTGACAATTTCAAACCTTCTCGATTCTCGTTTTTGTCGCAAGTTGGTTGAGAAGTCGAGAGAGCCATAATTTCTAGAATGTGGAAAATATTTGAGGGATGAAACAAAAAAAATCTTGAGAATAAGAAAACTTGAAAATAAATTTAAAAATATTAAAAACACACGGGCATTTCGGAGCTTCGTTTCCTCGCCGGCAGATAATTTTCCTTTCCCTAACCGTATGGCATGACCCTTTCTTGCCGGCAAGCAGAATTATCATGTCGAAACCAAAAATTCTCATGCCGACAAG</canonical>
            <polymorphic>TATTATTATCTGGTTTCGGTGTGATTTGGGGCGGAGTTTCAGGCGGTGTTGCGACTGTCTGCTAGAGAAAATTGGTTTTAACTTTTTGAATTTTCATCTACTCAGACGAAATGAACACTCATGCCGGCACAAAAAGGAAAAAGGCGTACACGCCGCAGGAGAAATTGTTTTTTCAGGCCGGCAAGGTTTTTTGAAAGTCACGCCGGCATGGAAAAGCTCTTTCAATCCTCCCCCTTCCCTCCGCAGCTGATGAATCAATAAAAATACACTATTTATTAAAGAGAAATAACTGAAAAGTAACATATTTCAAAAAGTGATAAGAATTAGGGAATTTCATTTGAAGTACAATTTGCGAGAAGTGGATAAGGCCGAAAAATAAATCGTTTTCAAATCCTTCACAATTTCGTCTGATTTGAAGCAAATTATGTTGATTCGACTTTGTTCCGTTTTCAGAGTAATCCATTATTCGAATCGAAATTCTTGGTTCCTGATCAGAACTMGGTGACTGAAAATTTATTTTTCGATTGATTATATCATCAATATTATACTAACCAAACTGCCGATCTTTTAAGATTACAATATCCGTGAGAATTGGGTTCCCACTTGTTGTATCCGACTAGTTGATCTTCCATTTCATCGAAGTGAGAAAGAAATATTATGCAGACAATCAAGAGTATCTGAAAAATCTGAAAACTTATATTTTTATGAAAACCTGACAATTTCAAACCTTCTCGATTCTCGTTTTTGTCGCAAGTTGGTTGAGAAGTCGAGAGAGCCATAATTTCTAGAATGTGGAAAATATTTGAGGGATGAAACAAAAAAAATCTTGAGAATAAGAAAACTTGAAAATAAATTTAAAAATATTAAAAACACACGGGCATTTCGGAGCTTCGTTTCCTCGCCGGCAGATAATTTTCCTTTCCCTAACCGTATGGCATGACCCTTTCTTGCCGGCAAGCAGAATTATCATGTCGAAACCAAAAATTCTCATGCCGACAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTGATTTGAAGCAAATTATGT</pcr_primer_p1>
		<pcr_primer_p2>ATATTTCTTTCTCACTTCGATGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTCTGATTTGAAGCAAATTATGTTGATTCGACTTTGTTCCGTTTTCAGAGTAATCCATTATTCGAATCGAAATTCTTGGTTCCTGATCAGAACTCGGTGACTGAAAATTTATTTTTCGATTGATTATATCATCAATATTATACTAACCAAACTGCCGATCTTTTAAGATTACAATATCCGTGAGAATTGGGTTCCCACTTGTTGTATCCGACTAGTTGATCTTCCATTTCATCGAAGTGAGAAAGAAATAT</canonical_amplicon>
		<polymorphic_amplicon>GTCTGATTTGAAGCAAATTATGTTGATTCGACTTTGTTCCGTTTTCAGAGTAATCCATTATTCGAATCGAAATTCTTGGTTCCTGATCAGAACTMGGTGACTGAAAATTTATTTTTCGATTGATTATATCATCAATATTATACTAACCAAACTGCCGATCTTTTAAGATTACAATATCCGTGAGAATTGGGTTCCCACTTGTTGTATCCGACTAGTTGATCTTCCATTTCATCGAAGTGAGAAAGAAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33465</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>250062</contig_pos>
        <strand></strand>
        <context>acctgtatta[C/G]aagggccgga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCCAGTTTTTTCTAGTTTCTCAGCGTCATTTTACCGTAAAACCTGTATTA</left_flank>
        <right_flank>AAGGGCCGGACCTTCTATTTTTCGTGAGGTCTCTTGGGGGGCACTTCAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAGATAATTTTCCTTTCCCTAACCGTATGGCATGACCCTTTCTTGCCGGCAAGCAGAATTATCATGTCGAAACCAAAAATTCTCATGCCGACAAGGCACTTCCTCGCCGGCTTGAGTTTTCATTTCGTCTGAGTAATTAGTTTGAAAATTAAATATTCAGAATCAGTAGAACAAGAGCTTTCGAACAAGTATAATCATGACCCATTTCCCCCTTAAAAGTTCGCTAGAGCGCACTTACCACAGCTCTCTTCTGCTCAGCAGTCGACGCCTTTGATCGATTTGTTGGTAACGTGGATTTTGGCTTTTTCGAAGTGCAATTCGACACGAAAAATGCAAGAGAAACCAGTGGGAATCCGATAACATGATGATGTTGATCATTGTATTGCTTGTTGTATTACTCGCTCTCTAATTGGCAAATCTGCAATACTTAGAATCTGAAAATTAAAAATCCAGTTTTTTCTAGTTTCTCAGCGTCATTTTACCGTAAAACCTGTATTACAAGGGCCGGACCTTCTATTTTTCGTGAGGTCTCTTGGGGGGCACTTCAATTAGAGGGGCACTCCAATTAGAGGGGGCAATTCTATTTTTTATTGCCTTAAAATGTTTCAAAAAATATGTATTTTCCTGATATTATTGCGAAAAAATGCAAAAAAATCCTAAATCCCGAAAAACGGCGTTGAAAAAAAAATAGGATTTGNNNNNNNNNNGCGCGGGAATTCGAATCCTCGTCCCTCCTAGCAACTTTTTTTTTTTGACAATTTTTCGCTTTCAACGGCATTTTTCGGGGATTTCGGATTTTTTTCGAATTTTTTCGCTATAGTATTGGGAAAATAGACAAATTTTCGAACATTTTAATGCAATAAAAATTTTTGGTCGGAGTCCTCCTTTAACAATTTTTTAACATCAACAATTTTATTTGTTATAAGCAAAGTTTTGTTTGCAAAATCCACAACTTGTTTTTTGAATTCCATCGTAAAATGCTGTCTTCTTTTCCTTGTG</canonical>
            <polymorphic>GCAGATAATTTTCCTTTCCCTAACCGTATGGCATGACCCTTTCTTGCCGGCAAGCAGAATTATCATGTCGAAACCAAAAATTCTCATGCCGACAAGGCACTTCCTCGCCGGCTTGAGTTTTCATTTCGTCTGAGTAATTAGTTTGAAAATTAAATATTCAGAATCAGTAGAACAAGAGCTTTCGAACAAGTATAATCATGACCCATTTCCCCCTTAAAAGTTCGCTAGAGCGCACTTACCACAGCTCTCTTCTGCTCAGCAGTCGACGCCTTTGATCGATTTGTTGGTAACGTGGATTTTGGCTTTTTCGAAGTGCAATTCGACACGAAAAATGCAAGAGAAACCAGTGGGAATCCGATAACATGATGATGTTGATCATTGTATTGCTTGTTGTATTACTCGCTCTCTAATTGGCAAATCTGCAATACTTAGAATCTGAAAATTAAAAATCCAGTTTTTTCTAGTTTCTCAGCGTCATTTTACCGTAAAACCTGTATTASAAGGGCCGGACCTTCTATTTTTCGTGAGGTCTCTTGGGGGGCACTTCAATTAGAGGGGCACTCCAATTAGAGGGGGCAATTCTATTTTTTATTGCCTTAAAATGTTTCAAAAAATATGTATTTTCCTGATATTATTGCGAAAAAATGCAAAAAAATCCTAAATCCCGAAAAACGGCGTTGAAAAAAAAATAGGATTTGNNNNNNNNNNGCGCGGGAATTCGAATCCTCGTCCCTCCTAGCAACTTTTTTTTTTTGACAATTTTTCGCTTTCAACGGCATTTTTCGGGGATTTCGGATTTTTTTCGAATTTTTTCGCTATAGTATTGGGAAAATAGACAAATTTTCGAACATTTTAATGCAATAAAAATTTTTGGTCGGAGTCCTCCTTTAACAATTTTTTAACATCAACAATTTTATTTGTTATAAGCAAAGTTTTGTTTGCAAAATCCACAACTTGTTTTTTGAATTCCATCGTAAAATGCTGTCTTCTTTTCCTTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATCTGAAAATTAAAAATCCAGT</pcr_primer_p1>
		<pcr_primer_p2>GGATTTTGCAAACAAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>518</pcr_amplicon_size>
		<canonical_amplicon>GAATCTGAAAATTAAAAATCCAGTTTTTTCTAGTTTCTCAGCGTCATTTTACCGTAAAACCTGTATTACAAGGGCCGGACCTTCTATTTTTCGTGAGGTCTCTTGGGGGGCACTTCAATTAGAGGGGCACTCCAATTAGAGGGGGCAATTCTATTTTTTATTGCCTTAAAATGTTTCAAAAAATATGTATTTTCCTGATATTATTGCGAAAAAATGCAAAAAAATCCTAAATCCCGAAAAACGGCGTTGAAAAAAAAATAGGATTTGNNNNNNNNNNGCGCGGGAATTCGAATCCTCGTCCCTCCTAGCAACTTTTTTTTTTTGACAATTTTTCGCTTTCAACGGCATTTTTCGGGGATTTCGGATTTTTTTCGAATTTTTTCGCTATAGTATTGGGAAAATAGACAAATTTTCGAACATTTTAATGCAATAAAAATTTTTGGTCGGAGTCCTCCTTTAACAATTTTTTAACATCAACAATTTTATTTGTTATAAGCAAAGTTTTGTTTGCAAAATCC</canonical_amplicon>
		<polymorphic_amplicon>GAATCTGAAAATTAAAAATCCAGTTTTTTCTAGTTTCTCAGCGTCATTTTACCGTAAAACCTGTATTASAAGGGCCGGACCTTCTATTTTTCGTGAGGTCTCTTGGGGGGCACTTCAATTAGAGGGGCACTCCAATTAGAGGGGGCAATTCTATTTTTTATTGCCTTAAAATGTTTCAAAAAATATGTATTTTCCTGATATTATTGCGAAAAAATGCAAAAAAATCCTAAATCCCGAAAAACGGCGTTGAAAAAAAAATAGGATTTGNNNNNNNNNNGCGCGGGAATTCGAATCCTCGTCCCTCCTAGCAACTTTTTTTTTTTGACAATTTTTCGCTTTCAACGGCATTTTTCGGGGATTTCGGATTTTTTTCGAATTTTTTCGCTATAGTATTGGGAAAATAGACAAATTTTCGAACATTTTAATGCAATAAAAATTTTTGGTCGGAGTCCTCCTTTAACAATTTTTTAACATCAACAATTTTATTTGTTATAAGCAAAGTTTTGTTTGCAAAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33466</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>250125</contig_pos>
        <strand></strand>
        <context>gaggggcact[C/T]caattagagg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTATTTTTCGTGAGGTCTCTTGGGGGGCACTTCAATTAGAGGGGCACT</left_flank>
        <right_flank>CAATTAGAGGGGGCAATTCTATTTTTTATTGCCTTAAAATGTTTCAAAAA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGTCGAAACCAAAAATTCTCATGCCGACAAGGCACTTCCTCGCCGGCTTGAGTTTTCATTTCGTCTGAGTAATTAGTTTGAAAATTAAATATTCAGAATCAGTAGAACAAGAGCTTTCGAACAAGTATAATCATGACCCATTTCCCCCTTAAAAGTTCGCTAGAGCGCACTTACCACAGCTCTCTTCTGCTCAGCAGTCGACGCCTTTGATCGATTTGTTGGTAACGTGGATTTTGGCTTTTTCGAAGTGCAATTCGACACGAAAAATGCAAGAGAAACCAGTGGGAATCCGATAACATGATGATGTTGATCATTGTATTGCTTGTTGTATTACTCGCTCTCTAATTGGCAAATCTGCAATACTTAGAATCTGAAAATTAAAAATCCAGTTTTTTCTAGTTTCTCAGCGTCATTTTACCGTAAAACCTGTATTACAAGGGCCGGACCTTCTATTTTTCGTGAGGTCTCTTGGGGGGCACTTCAATTAGAGGGGCACTCCAATTAGAGGGGGCAATTCTATTTTTTATTGCCTTAAAATGTTTCAAAAAATATGTATTTTCCTGATATTATTGCGAAAAAATGCAAAAAAATCCTAAATCCCGAAAAACGGCGTTGAAAAAAAAATAGGATTTGNNNNNNNNNNGCGCGGGAATTCGAATCCTCGTCCCTCCTAGCAACTTTTTTTTTTTGACAATTTTTCGCTTTCAACGGCATTTTTCGGGGATTTCGGATTTTTTTCGAATTTTTTCGCTATAGTATTGGGAAAATAGACAAATTTTCGAACATTTTAATGCAATAAAAATTTTTGGTCGGAGTCCTCCTTTAACAATTTTTTAACATCAACAATTTTATTTGTTATAAGCAAAGTTTTGTTTGCAAAATCCACAACTTGTTTTTTGAATTCCATCGTAAAATGCTGTCTTCTTTTCCTTGTGTTCTCAGTTTTTTTGATATCTCACATCCTTCCTCCAATACATCATGAAAAGAGCCTTCCTCTG</canonical>
            <polymorphic>CATGTCGAAACCAAAAATTCTCATGCCGACAAGGCACTTCCTCGCCGGCTTGAGTTTTCATTTCGTCTGAGTAATTAGTTTGAAAATTAAATATTCAGAATCAGTAGAACAAGAGCTTTCGAACAAGTATAATCATGACCCATTTCCCCCTTAAAAGTTCGCTAGAGCGCACTTACCACAGCTCTCTTCTGCTCAGCAGTCGACGCCTTTGATCGATTTGTTGGTAACGTGGATTTTGGCTTTTTCGAAGTGCAATTCGACACGAAAAATGCAAGAGAAACCAGTGGGAATCCGATAACATGATGATGTTGATCATTGTATTGCTTGTTGTATTACTCGCTCTCTAATTGGCAAATCTGCAATACTTAGAATCTGAAAATTAAAAATCCAGTTTTTTCTAGTTTCTCAGCGTCATTTTACCGTAAAACCTGTATTACAAGGGCCGGACCTTCTATTTTTCGTGAGGTCTCTTGGGGGGCACTTCAATTAGAGGGGCACTYCAATTAGAGGGGGCAATTCTATTTTTTATTGCCTTAAAATGTTTCAAAAAATATGTATTTTCCTGATATTATTGCGAAAAAATGCAAAAAAATCCTAAATCCCGAAAAACGGCGTTGAAAAAAAAATAGGATTTGNNNNNNNNNNGCGCGGGAATTCGAATCCTCGTCCCTCCTAGCAACTTTTTTTTTTTGACAATTTTTCGCTTTCAACGGCATTTTTCGGGGATTTCGGATTTTTTTCGAATTTTTTCGCTATAGTATTGGGAAAATAGACAAATTTTCGAACATTTTAATGCAATAAAAATTTTTGGTCGGAGTCCTCCTTTAACAATTTTTTAACATCAACAATTTTATTTGTTATAAGCAAAGTTTTGTTTGCAAAATCCACAACTTGTTTTTTGAATTCCATCGTAAAATGCTGTCTTCTTTTCCTTGTGTTCTCAGTTTTTTTGATATCTCACATCCTTCCTCCAATACATCATGAAAAGAGCCTTCCTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>506 392 102</canonical_bands>
                <polymorphic_bands>608 392</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTAGTTTCTCAGCGTCATT</pcr_primer_p1>
		<pcr_primer_p2>GGATTTTGCAAACAAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>TTTCTAGTTTCTCAGCGTCATTTTACCGTAAAACCTGTATTACAAGGGCCGGACCTTCTATTTTTCGTGAGGTCTCTTGGGGGGCACTTCAATTAGAGGGGCACTCCAATTAGAGGGGGCAATTCTATTTTTTATTGCCTTAAAATGTTTCAAAAAATATGTATTTTCCTGATATTATTGCGAAAAAATGCAAAAAAATCCTAAATCCCGAAAAACGGCGTTGAAAAAAAAATAGGATTTGNNNNNNNNNNGCGCGGGAATTCGAATCCTCGTCCCTCCTAGCAACTTTTTTTTTTTGACAATTTTTCGCTTTCAACGGCATTTTTCGGGGATTTCGGATTTTTTTCGAATTTTTTCGCTATAGTATTGGGAAAATAGACAAATTTTCGAACATTTTAATGCAATAAAAATTTTTGGTCGGAGTCCTCCTTTAACAATTTTTTAACATCAACAATTTTATTTGTTATAAGCAAAGTTTTGTTTGCAAAATCC</canonical_amplicon>
		<polymorphic_amplicon>TTTCTAGTTTCTCAGCGTCATTTTACCGTAAAACCTGTATTACAAGGGCCGGACCTTCTATTTTTCGTGAGGTCTCTTGGGGGGCACTTCAATTAGAGGGGCACTYCAATTAGAGGGGGCAATTCTATTTTTTATTGCCTTAAAATGTTTCAAAAAATATGTATTTTCCTGATATTATTGCGAAAAAATGCAAAAAAATCCTAAATCCCGAAAAACGGCGTTGAAAAAAAAATAGGATTTGNNNNNNNNNNGCGCGGGAATTCGAATCCTCGTCCCTCCTAGCAACTTTTTTTTTTTGACAATTTTTCGCTTTCAACGGCATTTTTCGGGGATTTCGGATTTTTTTCGAATTTTTTCGCTATAGTATTGGGAAAATAGACAAATTTTCGAACATTTTAATGCAATAAAAATTTTTGGTCGGAGTCCTCCTTTAACAATTTTTTAACATCAACAATTTTATTTGTTATAAGCAAAGTTTTGTTTGCAAAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33467</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>251437</contig_pos>
        <strand>+</strand>
        <context>AAATTTACAA[A/C]ATCTGACTGC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAACTTGTTTCAAAATGCATCGAGTGCTTTTAAGAGCACGAAATTTACAA</left_flank>
        <right_flank>ATCTGACTGCTAGAAGTCTTAGCGATGCAACAAAAGCGGAAAAAATAGTG</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTCACCTCTCCCGAAATTTGTTATTTTGAGCTAAAAATCCCTTGGAAATGGGTTTTTTTTTCAAAATTTTTAAATTCCCGCCTTTTCTAATTAGAGCGCACTTACGATTTGCAACAATACCTCATCAACACAAGAGATTCTTGTGTGTTTGAAGATGTTAAAATTCAGAAATATTGGATTTTTCAAGTTTTTCGTGGAAAATCTTTTGGAATTTCGTGGAAAATATTTTGAATTCTAGACCTATTTCCAATCGACATTCCCCTATTAACTGCTTTTTTCCTCCTTTTTTTTCTGAAAAACGTCTTTTTTTTAACGACTGCAAATTTCCAATTCAAACGCGCGCGCAAATATCTCCCTCGCGGCCTAGAAAACCCCCCAGCGCGCCCAAAACTCTTCCACCTCTTCCACCTCTATTTTTCATCAATTTTCTCGATTTTCAACCCGAAAAACTTGTTTCAAAATGCATCGAGTGCTTTTAAGAGCACGAAATTTACAACATCTGACTGCTAGAAGTCTTAGCGATGCAACAAAAGCGGAAAAAATAGTGGAAATTAGTGAAAAAAGGTCGGTTTGACAATTTGAAATTTTGAAATTCAAAAAAAAAGTTTTTTCAGCAAATATGCAATTCGAACTCTGGATAACTCGGCGCCAATTGAAAAGCGATCACTTTCAAGGGGATTCGCGATGAATAAATTTGAAAAAGTGCGGGAAATTCGATTTTTTGAAAATTTAGAATTTCAAAAGAAAACTTGAGTTTTGGAGCTAAAATTGCTATTTTTTGGGGTTTTCGAGTGAAAAAAAGCTGTAAAAAGCATTAAAAAACGGGTTTCAACATGAGAAAAGTGTTAAAAATTGAAAAAATCTGAATTTGACTTCATAGTCAAATTTCCCCAAAAATTCATTTTTCGGGTCAAAAAACCTTGTTTTTTAGGGTTTTTGACTGAAAAAAAAACAGTAAAAAGCATAGAAAACCGGTGTTTAACATGGGAAAAATTCT</canonical>
            <polymorphic>AATTTCACCTCTCCCGAAATTTGTTATTTTGAGCTAAAAATCCCTTGGAAATGGGTTTTTTTTTCAAAATTTTTAAATTCCCGCCTTTTCTAATTAGAGCGCACTTACGATTTGCAACAATACCTCATCAACACAAGAGATTCTTGTGTGTTTGAAGATGTTAAAATTCAGAAATATTGGATTTTTCAAGTTTTTCGTGGAAAATCTTTTGGAATTTCGTGGAAAATATTTTGAATTCTAGACCTATTTCCAATCGACATTCCCCTATTAACTGCTTTTTTCCTCCTTTTTTTTCTGAAAAACGTCTTTTTTTTAACGACTGCAAATTTCCAATTCAAACGCGCGCGCAAATATCTCCCTCGCGGCCTAGAAAACCCCCCAGCGCGCCCAAAACTCTTCCACCTCTTCCACCTCTATTTTTCATCAATTTTCTCGATTTTCAACCCGAAAAACTTGTTTCAAAATGCATCGAGTGCTTTTAAGAGCACGAAATTTACAAMATCTGACTGCTAGAAGTCTTAGCGATGCAACAAAAGCGGAAAAAATAGTGGAAATTAGTGAAAAAAGGTCGGTTTGACAATTTGAAATTTTGAAATTCAAAAAAAAAGTTTTTTCAGCAAATATGCAATTCGAACTCTGGATAACTCGGCGCCAATTGAAAAGCGATCACTTTCAAGGGGATTCGCGATGAATAAATTTGAAAAAGTGCGGGAAATTCGATTTTTTGAAAATTTAGAATTTCAAAAGAAAACTTGAGTTTTGGAGCTAAAATTGCTATTTTTTGGGGTTTTCGAGTGAAAAAAAGCTGTAAAAAGCATTAAAAAACGGGTTTCAACATGAGAAAAGTGTTAAAAATTGAAAAAATCTGAATTTGACTTCATAGTCAAATTTCCCCAAAAATTCATTTTTCGGGTCAAAAAACCTTGTTTTTTAGGGTTTTTGACTGAAAAAAAAACAGTAAAAAGCATAGAAAACCGGTGTTTAACATGGGAAAAATTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTGCAAATTTCCAATTCAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCACTAATTTCCACTATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTGCAAATTTCCAATTCAAACGCGCGCGCAAATATCTCCCTCGCGGCCTAGAAAACCCCCCAGCGCGCCCAAAACTCTTCCACCTCTTCCACCTCTATTTTTCATCAATTTTCTCGATTTTCAACCCGAAAAACTTGTTTCAAAATGCATCGAGTGCTTTTAAGAGCACGAAATTTACAACATCTGACTGCTAGAAGTCTTAGCGATGCAACAAAAGCGGAAAAAATAGTGGAAATTAGTGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACTGCAAATTTCCAATTCAAACGCGCGCGCAAATATCTCCCTCGCGGCCTAGAAAACCCCCCAGCGCGCCCAAAACTCTTCCACCTCTTCCACCTCTATTTTTCATCAATTTTCTCGATTTTCAACCCGAAAAACTTGTTTCAAAATGCATCGAGTGCTTTTAAGAGCACGAAATTTACAAMATCTGACTGCTAGAAGTCTTAGCGATGCAACAAAAGCGGAAAAAATAGTGGAAATTAGTGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33468</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>251621</contig_pos>
        <strand>+</strand>
        <context>CAAGGGGATT[C/T]GCGATGAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTCTGGATAACTCGGCGCCAATTGAAAAGCGATCACTTTCAAGGGGATT</left_flank>
        <right_flank>GCGATGAATAAATTTGAAAAAGTGCGGGAAATTCGATTTTTTGAAAATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAAGTTTTTCGTGGAAAATCTTTTGGAATTTCGTGGAAAATATTTTGAATTCTAGACCTATTTCCAATCGACATTCCCCTATTAACTGCTTTTTTCCTCCTTTTTTTTCTGAAAAACGTCTTTTTTTTAACGACTGCAAATTTCCAATTCAAACGCGCGCGCAAATATCTCCCTCGCGGCCTAGAAAACCCCCCAGCGCGCCCAAAACTCTTCCACCTCTTCCACCTCTATTTTTCATCAATTTTCTCGATTTTCAACCCGAAAAACTTGTTTCAAAATGCATCGAGTGCTTTTAAGAGCACGAAATTTACAACATCTGACTGCTAGAAGTCTTAGCGATGCAACAAAAGCGGAAAAAATAGTGGAAATTAGTGAAAAAAGGTCGGTTTGACAATTTGAAATTTTGAAATTCAAAAAAAAAGTTTTTTCAGCAAATATGCAATTCGAACTCTGGATAACTCGGCGCCAATTGAAAAGCGATCACTTTCAAGGGGATTCGCGATGAATAAATTTGAAAAAGTGCGGGAAATTCGATTTTTTGAAAATTTAGAATTTCAAAAGAAAACTTGAGTTTTGGAGCTAAAATTGCTATTTTTTGGGGTTTTCGAGTGAAAAAAAGCTGTAAAAAGCATTAAAAAACGGGTTTCAACATGAGAAAAGTGTTAAAAATTGAAAAAATCTGAATTTGACTTCATAGTCAAATTTCCCCAAAAATTCATTTTTCGGGTCAAAAAACCTTGTTTTTTAGGGTTTTTGACTGAAAAAAAAACAGTAAAAAGCATAGAAAACCGGTGTTTAACATGGGAAAAATTCTAAAAATTGAAAAATCCAAATCTTTTCAAAAATTTGAATCTTCGACTAAAATCCAAATTTGACTATTCGAATTTTCTCAATTTTCGGGTTTAAAAAAATTCGATTTTCCAGCTAAAAATCAACCTAATTGCGTGTTTTTCCAGGATTTCATGATCTACCCCGAGTACGCGGATTCAGATGACGTC</canonical>
            <polymorphic>TTCAAGTTTTTCGTGGAAAATCTTTTGGAATTTCGTGGAAAATATTTTGAATTCTAGACCTATTTCCAATCGACATTCCCCTATTAACTGCTTTTTTCCTCCTTTTTTTTCTGAAAAACGTCTTTTTTTTAACGACTGCAAATTTCCAATTCAAACGCGCGCGCAAATATCTCCCTCGCGGCCTAGAAAACCCCCCAGCGCGCCCAAAACTCTTCCACCTCTTCCACCTCTATTTTTCATCAATTTTCTCGATTTTCAACCCGAAAAACTTGTTTCAAAATGCATCGAGTGCTTTTAAGAGCACGAAATTTACAACATCTGACTGCTAGAAGTCTTAGCGATGCAACAAAAGCGGAAAAAATAGTGGAAATTAGTGAAAAAAGGTCGGTTTGACAATTTGAAATTTTGAAATTCAAAAAAAAAGTTTTTTCAGCAAATATGCAATTCGAACTCTGGATAACTCGGCGCCAATTGAAAAGCGATCACTTTCAAGGGGATTYGCGATGAATAAATTTGAAAAAGTGCGGGAAATTCGATTTTTTGAAAATTTAGAATTTCAAAAGAAAACTTGAGTTTTGGAGCTAAAATTGCTATTTTTTGGGGTTTTCGAGTGAAAAAAAGCTGTAAAAAGCATTAAAAAACGGGTTTCAACATGAGAAAAGTGTTAAAAATTGAAAAAATCTGAATTTGACTTCATAGTCAAATTTCCCCAAAAATTCATTTTTCGGGTCAAAAAACCTTGTTTTTTAGGGTTTTTGACTGAAAAAAAAACAGTAAAAAGCATAGAAAACCGGTGTTTAACATGGGAAAAATTCTAAAAATTGAAAAATCCAAATCTTTTCAAAAATTTGAATCTTCGACTAAAATCCAAATTTGACTATTCGAATTTTCTCAATTTTCGGGTTTAAAAAAATTCGATTTTCCAGCTAAAAATCAACCTAATTGCGTGTTTTTCCAGGATTTCATGATCTACCCCGAGTACGCGGATTCAGATGACGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>482 301 157 22 17 17 2 2</canonical_bands>
                <polymorphic_bands>783 157 22 17 17 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGCGA</site>
                <isoschizomers>
                    <enzyme>Bsp68I</enzyme>
                    <enzyme>NruI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>496 355 135 14</canonical_bands>
                <polymorphic_bands>851 135 14</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>464 205 194 54 47 36</canonical_bands>
                <polymorphic_bands>511 205 194 54 36</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>496 355 135 14</canonical_bands>
                <polymorphic_bands>851 135 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATATGCAATTCGAACTCT</pcr_primer_p1>
		<pcr_primer_p2>TTTCAATTTTTAACACTTTTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAAATATGCAATTCGAACTCTGGATAACTCGGCGCCAATTGAAAAGCGATCACTTTCAAGGGGATTCGCGATGAATAAATTTGAAAAAGTGCGGGAAATTCGATTTTTTGAAAATTTAGAATTTCAAAAGAAAACTTGAGTTTTGGAGCTAAAATTGCTATTTTTTGGGGTTTTCGAGTGAAAAAAAGCTGTAAAAAGCATTAAAAAACGGGTTTCAACATGAGAAAAGTGTTAAAAATTGAAA</canonical_amplicon>
		<polymorphic_amplicon>CAAATATGCAATTCGAACTCTGGATAACTCGGCGCCAATTGAAAAGCGATCACTTTCAAGGGGATTYGCGATGAATAAATTTGAAAAAGTGCGGGAAATTCGATTTTTTGAAAATTTAGAATTTCAAAAGAAAACTTGAGTTTTGGAGCTAAAATTGCTATTTTTTGGGGTTTTCGAGTGAAAAAAAGCTGTAAAAAGCATTAAAAAACGGGTTTCAACATGAGAAAAGTGTTAAAAATTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33469</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>251692</contig_pos>
        <strand>+</strand>
        <context>AAGAAAACTT[G/T]AGTTTTGGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGTGCGGGAAATTCGATTTTTTGAAAATTTAGAATTTCAAAAGAAAACTT</left_flank>
        <right_flank>AGTTTTGGAGCTAAAATTGCTATTTTTTGGGGTTTTCGAGTGAAAAAAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACATTCCCCTATTAACTGCTTTTTTCCTCCTTTTTTTTCTGAAAAACGTCTTTTTTTTAACGACTGCAAATTTCCAATTCAAACGCGCGCGCAAATATCTCCCTCGCGGCCTAGAAAACCCCCCAGCGCGCCCAAAACTCTTCCACCTCTTCCACCTCTATTTTTCATCAATTTTCTCGATTTTCAACCCGAAAAACTTGTTTCAAAATGCATCGAGTGCTTTTAAGAGCACGAAATTTACAACATCTGACTGCTAGAAGTCTTAGCGATGCAACAAAAGCGGAAAAAATAGTGGAAATTAGTGAAAAAAGGTCGGTTTGACAATTTGAAATTTTGAAATTCAAAAAAAAAGTTTTTTCAGCAAATATGCAATTCGAACTCTGGATAACTCGGCGCCAATTGAAAAGCGATCACTTTCAAGGGGATTCGCGATGAATAAATTTGAAAAAGTGCGGGAAATTCGATTTTTTGAAAATTTAGAATTTCAAAAGAAAACTTGAGTTTTGGAGCTAAAATTGCTATTTTTTGGGGTTTTCGAGTGAAAAAAAGCTGTAAAAAGCATTAAAAAACGGGTTTCAACATGAGAAAAGTGTTAAAAATTGAAAAAATCTGAATTTGACTTCATAGTCAAATTTCCCCAAAAATTCATTTTTCGGGTCAAAAAACCTTGTTTTTTAGGGTTTTTGACTGAAAAAAAAACAGTAAAAAGCATAGAAAACCGGTGTTTAACATGGGAAAAATTCTAAAAATTGAAAAATCCAAATCTTTTCAAAAATTTGAATCTTCGACTAAAATCCAAATTTGACTATTCGAATTTTCTCAATTTTCGGGTTTAAAAAAATTCGATTTTCCAGCTAAAAATCAACCTAATTGCGTGTTTTTCCAGGATTTCATGATCTACCCCGAGTACGCGGATTCAGATGACGTCCGGAACATTGAAGGTTATGTAGACGTGCTTCGGAAGTCGTTGGAGCTCTCAATCGACTCAAAATCAATAGA</canonical>
            <polymorphic>GACATTCCCCTATTAACTGCTTTTTTCCTCCTTTTTTTTCTGAAAAACGTCTTTTTTTTAACGACTGCAAATTTCCAATTCAAACGCGCGCGCAAATATCTCCCTCGCGGCCTAGAAAACCCCCCAGCGCGCCCAAAACTCTTCCACCTCTTCCACCTCTATTTTTCATCAATTTTCTCGATTTTCAACCCGAAAAACTTGTTTCAAAATGCATCGAGTGCTTTTAAGAGCACGAAATTTACAACATCTGACTGCTAGAAGTCTTAGCGATGCAACAAAAGCGGAAAAAATAGTGGAAATTAGTGAAAAAAGGTCGGTTTGACAATTTGAAATTTTGAAATTCAAAAAAAAAGTTTTTTCAGCAAATATGCAATTCGAACTCTGGATAACTCGGCGCCAATTGAAAAGCGATCACTTTCAAGGGGATTCGCGATGAATAAATTTGAAAAAGTGCGGGAAATTCGATTTTTTGAAAATTTAGAATTTCAAAAGAAAACTTKAGTTTTGGAGCTAAAATTGCTATTTTTTGGGGTTTTCGAGTGAAAAAAAGCTGTAAAAAGCATTAAAAAACGGGTTTCAACATGAGAAAAGTGTTAAAAATTGAAAAAATCTGAATTTGACTTCATAGTCAAATTTCCCCAAAAATTCATTTTTCGGGTCAAAAAACCTTGTTTTTTAGGGTTTTTGACTGAAAAAAAAACAGTAAAAAGCATAGAAAACCGGTGTTTAACATGGGAAAAATTCTAAAAATTGAAAAATCCAAATCTTTTCAAAAATTTGAATCTTCGACTAAAATCCAAATTTGACTATTCGAATTTTCTCAATTTTCGGGTTTAAAAAAATTCGATTTTCCAGCTAAAAATCAACCTAATTGCGTGTTTTTCCAGGATTTCATGATCTACCCCGAGTACGCGGATTCAGATGACGTCCGGAACATTGAAGGTTATGTAGACGTGCTTCGGAAGTCGTTGGAGCTCTCAATCGACTCAAAATCAATAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATATGCAATTCGAACTCT</pcr_primer_p1>
		<pcr_primer_p2>TTTCAATTTTTAACACTTTTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAAATATGCAATTCGAACTCTGGATAACTCGGCGCCAATTGAAAAGCGATCACTTTCAAGGGGATTCGCGATGAATAAATTTGAAAAAGTGCGGGAAATTCGATTTTTTGAAAATTTAGAATTTCAAAAGAAAACTTGAGTTTTGGAGCTAAAATTGCTATTTTTTGGGGTTTTCGAGTGAAAAAAAGCTGTAAAAAGCATTAAAAAACGGGTTTCAACATGAGAAAAGTGTTAAAAATTGAAA</canonical_amplicon>
		<polymorphic_amplicon>CAAATATGCAATTCGAACTCTGGATAACTCGGCGCCAATTGAAAAGCGATCACTTTCAAGGGGATTCGCGATGAATAAATTTGAAAAAGTGCGGGAAATTCGATTTTTTGAAAATTTAGAATTTCAAAAGAAAACTTKAGTTTTGGAGCTAAAATTGCTATTTTTTGGGGTTTTCGAGTGAAAAAAAGCTGTAAAAAGCATTAAAAAACGGGTTTCAACATGAGAAAAGTGTTAAAAATTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33470</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>251720</contig_pos>
        <strand>+</strand>
        <context>TGCTATTTTT[C/T]GGGGTTTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAGAATTTCAAAAGAAAACTTGAGTTTTGGAGCTAAAATTGCTATTTTT</left_flank>
        <right_flank>GGGGTTTTCGAGTGAAAAAAAGCTGTAAAAAGCATTAAAAAACGGGTTTC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTTTTTTTTCTGAAAAACGTCTTTTTTTTAACGACTGCAAATTTCCAATTCAAACGCGCGCGCAAATATCTCCCTCGCGGCCTAGAAAACCCCCCAGCGCGCCCAAAACTCTTCCACCTCTTCCACCTCTATTTTTCATCAATTTTCTCGATTTTCAACCCGAAAAACTTGTTTCAAAATGCATCGAGTGCTTTTAAGAGCACGAAATTTACAACATCTGACTGCTAGAAGTCTTAGCGATGCAACAAAAGCGGAAAAAATAGTGGAAATTAGTGAAAAAAGGTCGGTTTGACAATTTGAAATTTTGAAATTCAAAAAAAAAGTTTTTTCAGCAAATATGCAATTCGAACTCTGGATAACTCGGCGCCAATTGAAAAGCGATCACTTTCAAGGGGATTCGCGATGAATAAATTTGAAAAAGTGCGGGAAATTCGATTTTTTGAAAATTTAGAATTTCAAAAGAAAACTTGAGTTTTGGAGCTAAAATTGCTATTTTTTGGGGTTTTCGAGTGAAAAAAAGCTGTAAAAAGCATTAAAAAACGGGTTTCAACATGAGAAAAGTGTTAAAAATTGAAAAAATCTGAATTTGACTTCATAGTCAAATTTCCCCAAAAATTCATTTTTCGGGTCAAAAAACCTTGTTTTTTAGGGTTTTTGACTGAAAAAAAAACAGTAAAAAGCATAGAAAACCGGTGTTTAACATGGGAAAAATTCTAAAAATTGAAAAATCCAAATCTTTTCAAAAATTTGAATCTTCGACTAAAATCCAAATTTGACTATTCGAATTTTCTCAATTTTCGGGTTTAAAAAAATTCGATTTTCCAGCTAAAAATCAACCTAATTGCGTGTTTTTCCAGGATTTCATGATCTACCCCGAGTACGCGGATTCAGATGACGTCCGGAACATTGAAGGTTATGTAGACGTGCTTCGGAAGTCGTTGGAGCTCTCAATCGACTCAAAATCAATAGAAAAGGATGGAAAATTGTCATCAGAAATG</canonical>
            <polymorphic>TCCTTTTTTTTCTGAAAAACGTCTTTTTTTTAACGACTGCAAATTTCCAATTCAAACGCGCGCGCAAATATCTCCCTCGCGGCCTAGAAAACCCCCCAGCGCGCCCAAAACTCTTCCACCTCTTCCACCTCTATTTTTCATCAATTTTCTCGATTTTCAACCCGAAAAACTTGTTTCAAAATGCATCGAGTGCTTTTAAGAGCACGAAATTTACAACATCTGACTGCTAGAAGTCTTAGCGATGCAACAAAAGCGGAAAAAATAGTGGAAATTAGTGAAAAAAGGTCGGTTTGACAATTTGAAATTTTGAAATTCAAAAAAAAAGTTTTTTCAGCAAATATGCAATTCGAACTCTGGATAACTCGGCGCCAATTGAAAAGCGATCACTTTCAAGGGGATTCGCGATGAATAAATTTGAAAAAGTGCGGGAAATTCGATTTTTTGAAAATTTAGAATTTCAAAAGAAAACTTGAGTTTTGGAGCTAAAATTGCTATTTTTYGGGGTTTTCGAGTGAAAAAAAGCTGTAAAAAGCATTAAAAAACGGGTTTCAACATGAGAAAAGTGTTAAAAATTGAAAAAATCTGAATTTGACTTCATAGTCAAATTTCCCCAAAAATTCATTTTTCGGGTCAAAAAACCTTGTTTTTTAGGGTTTTTGACTGAAAAAAAAACAGTAAAAAGCATAGAAAACCGGTGTTTAACATGGGAAAAATTCTAAAAATTGAAAAATCCAAATCTTTTCAAAAATTTGAATCTTCGACTAAAATCCAAATTTGACTATTCGAATTTTCTCAATTTTCGGGTTTAAAAAAATTCGATTTTCCAGCTAAAAATCAACCTAATTGCGTGTTTTTCCAGGATTTCATGATCTACCCCGAGTACGCGGATTCAGATGACGTCCGGAACATTGAAGGTTATGTAGACGTGCTTCGGAAGTCGTTGGAGCTCTCAATCGACTCAAAATCAATAGAAAAGGATGGAAAATTGTCATCAGAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAATATGCAATTCGAACTCT</pcr_primer_p1>
		<pcr_primer_p2>TTTCAATTTTTAACACTTTTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAAATATGCAATTCGAACTCTGGATAACTCGGCGCCAATTGAAAAGCGATCACTTTCAAGGGGATTCGCGATGAATAAATTTGAAAAAGTGCGGGAAATTCGATTTTTTGAAAATTTAGAATTTCAAAAGAAAACTTGAGTTTTGGAGCTAAAATTGCTATTTTTTGGGGTTTTCGAGTGAAAAAAAGCTGTAAAAAGCATTAAAAAACGGGTTTCAACATGAGAAAAGTGTTAAAAATTGAAA</canonical_amplicon>
		<polymorphic_amplicon>CAAATATGCAATTCGAACTCTGGATAACTCGGCGCCAATTGAAAAGCGATCACTTTCAAGGGGATTCGCGATGAATAAATTTGAAAAAGTGCGGGAAATTCGATTTTTTGAAAATTTAGAATTTCAAAAGAAAACTTGAGTTTTGGAGCTAAAATTGCTATTTTTYGGGGTTTTCGAGTGAAAAAAAGCTGTAAAAAGCATTAAAAAACGGGTTTCAACATGAGAAAAGTGTTAAAAATTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33471</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>251856</contig_pos>
        <strand>+</strand>
        <context>TCGGGTCAAA[A/T]RACCTTGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTGACTTCATAGTCAAATTTCCCCAAAAATTCATTTTTCGGGTCAAA</left_flank>
        <right_flank>AACCTTGTTTTTTAGGGTTTTTGACTGAAAAAAAAACAGTAAAAAGCATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCATCAATTTTCTCGATTTTCAACCCGAAAAACTTGTTTCAAAATGCATCGAGTGCTTTTAAGAGCACGAAATTTACAACATCTGACTGCTAGAAGTCTTAGCGATGCAACAAAAGCGGAAAAAATAGTGGAAATTAGTGAAAAAAGGTCGGTTTGACAATTTGAAATTTTGAAATTCAAAAAAAAAGTTTTTTCAGCAAATATGCAATTCGAACTCTGGATAACTCGGCGCCAATTGAAAAGCGATCACTTTCAAGGGGATTCGCGATGAATAAATTTGAAAAAGTGCGGGAAATTCGATTTTTTGAAAATTTAGAATTTCAAAAGAAAACTTGAGTTTTGGAGCTAAAATTGCTATTTTTTGGGGTTTTCGAGTGAAAAAAAGCTGTAAAAAGCATTAAAAAACGGGTTTCAACATGAGAAAAGTGTTAAAAATTGAAAAAATCTGAATTTGACTTCATAGTCAAATTTCCCCAAAAATTCATTTTTCGGGTCAAAAAACCTTGTTTTTTAGGGTTTTTGACTGAAAAAAAAACAGTAAAAAGCATAGAAAACCGGTGTTTAACATGGGAAAAATTCTAAAAATTGAAAAATCCAAATCTTTTCAAAAATTTGAATCTTCGACTAAAATCCAAATTTGACTATTCGAATTTTCTCAATTTTCGGGTTTAAAAAAATTCGATTTTCCAGCTAAAAATCAACCTAATTGCGTGTTTTTCCAGGATTTCATGATCTACCCCGAGTACGCGGATTCAGATGACGTCCGGAACATTGAAGGTTATGTAGACGTGCTTCGGAAGTCGTTGGAGCTCTCAATCGACTCAAAATCAATAGAAAAGGATGGAAAATTGTCATCAGAAATGCTAGAAACCCTTCGAAGTAATGAAATTCACTCGTTGGCAATTCCCAAGGATTTTGGTGGAATTGGAATGAATAATAAGGATATATCAAAGGTTTTCGAGGAGTTATCACTGGATTGGAACATCTATACAAGTGCTC</canonical>
            <polymorphic>TTCATCAATTTTCTCGATTTTCAACCCGAAAAACTTGTTTCAAAATGCATCGAGTGCTTTTAAGAGCACGAAATTTACAACATCTGACTGCTAGAAGTCTTAGCGATGCAACAAAAGCGGAAAAAATAGTGGAAATTAGTGAAAAAAGGTCGGTTTGACAATTTGAAATTTTGAAATTCAAAAAAAAAGTTTTTTCAGCAAATATGCAATTCGAACTCTGGATAACTCGGCGCCAATTGAAAAGCGATCACTTTCAAGGGGATTCGCGATGAATAAATTTGAAAAAGTGCGGGAAATTCGATTTTTTGAAAATTTAGAATTTCAAAAGAAAACTTGAGTTTTGGAGCTAAAATTGCTATTTTTTGGGGTTTTCGAGTGAAAAAAAGCTGTAAAAAGCATTAAAAAACGGGTTTCAACATGAGAAAAGTGTTAAAAATTGAAAAAATCTGAATTTGACTTCATAGTCAAATTTCCCCAAAAATTCATTTTTCGGGTCAAAWAACCTTGTTTTTTAGGGTTTTTGACTGAAAAAAAAACAGTAAAAAGCATAGAAAACCGGTGTTTAACATGGGAAAAATTCTAAAAATTGAAAAATCCAAATCTTTTCAAAAATTTGAATCTTCGACTAAAATCCAAATTTGACTATTCGAATTTTCTCAATTTTCGGGTTTAAAAAAATTCGATTTTCCAGCTAAAAATCAACCTAATTGCGTGTTTTTCCAGGATTTCATGATCTACCCCGAGTACGCGGATTCAGATGACGTCCGGAACATTGAAGGTTATGTAGACGTGCTTCGGAAGTCGTTGGAGCTCTCAATCGACTCAAAATCAATAGAAAAGGATGGAAAATTGTCATCAGAAATGCTAGAAACCCTTCGAAGTAATGAAATTCACTCGTTGGCAATTCCCAAGGATTTTGGTGGAATTGGAATGAATAATAAGGATATATCAAAGGTTTTCGAGGAGTTATCACTGGATTGGAACATCTATACAAGTGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTTTGGAGCTAAAATTGCTA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTAGAATTTTTCCCATGTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTTTTGGAGCTAAAATTGCTATTTTTTGGGGTTTTCGAGTGAAAAAAAGCTGTAAAAAGCATTAAAAAACGGGTTTCAACATGAGAAAAGTGTTAAAAATTGAAAAAATCTGAATTTGACTTCATAGTCAAATTTCCCCAAAAATTCATTTTTCGGGTCAAAAAACCTTGTTTTTTAGGGTTTTTGACTGAAAAAAAAACAGTAAAAAGCATAGAAAACCGGTGTTTAACATGGGAAAAATTCTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AGTTTTGGAGCTAAAATTGCTATTTTTTGGGGTTTTCGAGTGAAAAAAAGCTGTAAAAAGCATTAAAAAACGGGTTTCAACATGAGAAAAGTGTTAAAAATTGAAAAAATCTGAATTTGACTTCATAGTCAAATTTCCCCAAAAATTCATTTTTCGGGTCAAAWAACCTTGTTTTTTAGGGTTTTTGACTGAAAAAAAAACAGTAAAAAGCATAGAAAACCGGTGTTTAACATGGGAAAAATTCTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33472</snp_id>
        <super_contig>c008300754.Contig2</super_contig>
        <contig_pos>251857</contig_pos>
        <strand>+</strand>
        <context>CGGGTCAAAW[A/G]ACCTTGTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTGACTTCATAGTCAAATTTCCCCAAAAATTCATTTTTCGGGTCAAAA</left_flank>
        <right_flank>ACCTTGTTTTTTAGGGTTTTTGACTGAAAAAAAAACAGTAAAAAGCATAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATCAATTTTCTCGATTTTCAACCCGAAAAACTTGTTTCAAAATGCATCGAGTGCTTTTAAGAGCACGAAATTTACAACATCTGACTGCTAGAAGTCTTAGCGATGCAACAAAAGCGGAAAAAATAGTGGAAATTAGTGAAAAAAGGTCGGTTTGACAATTTGAAATTTTGAAATTCAAAAAAAAAGTTTTTTCAGCAAATATGCAATTCGAACTCTGGATAACTCGGCGCCAATTGAAAAGCGATCACTTTCAAGGGGATTCGCGATGAATAAATTTGAAAAAGTGCGGGAAATTCGATTTTTTGAAAATTTAGAATTTCAAAAGAAAACTTGAGTTTTGGAGCTAAAATTGCTATTTTTTGGGGTTTTCGAGTGAAAAAAAGCTGTAAAAAGCATTAAAAAACGGGTTTCAACATGAGAAAAGTGTTAAAAATTGAAAAAATCTGAATTTGACTTCATAGTCAAATTTCCCCAAAAATTCATTTTTCGGGTCAAAAAACCTTGTTTTTTAGGGTTTTTGACTGAAAAAAAAACAGTAAAAAGCATAGAAAACCGGTGTTTAACATGGGAAAAATTCTAAAAATTGAAAAATCCAAATCTTTTCAAAAATTTGAATCTTCGACTAAAATCCAAATTTGACTATTCGAATTTTCTCAATTTTCGGGTTTAAAAAAATTCGATTTTCCAGCTAAAAATCAACCTAATTGCGTGTTTTTCCAGGATTTCATGATCTACCCCGAGTACGCGGATTCAGATGACGTCCGGAACATTGAAGGTTATGTAGACGTGCTTCGGAAGTCGTTGGAGCTCTCAATCGACTCAAAATCAATAGAAAAGGATGGAAAATTGTCATCAGAAATGCTAGAAACCCTTCGAAGTAATGAAATTCACTCGTTGGCAATTCCCAAGGATTTTGGTGGAATTGGAATGAATAATAAGGATATATCAAAGGTTTTCGAGGAGTTATCACTGGATTGGAACATCTATACAAGTGCTCA</canonical>
            <polymorphic>TCATCAATTTTCTCGATTTTCAACCCGAAAAACTTGTTTCAAAATGCATCGAGTGCTTTTAAGAGCACGAAATTTACAACATCTGACTGCTAGAAGTCTTAGCGATGCAACAAAAGCGGAAAAAATAGTGGAAATTAGTGAAAAAAGGTCGGTTTGACAATTTGAAATTTTGAAATTCAAAAAAAAAGTTTTTTCAGCAAATATGCAATTCGAACTCTGGATAACTCGGCGCCAATTGAAAAGCGATCACTTTCAAGGGGATTCGCGATGAATAAATTTGAAAAAGTGCGGGAAATTCGATTTTTTGAAAATTTAGAATTTCAAAAGAAAACTTGAGTTTTGGAGCTAAAATTGCTATTTTTTGGGGTTTTCGAGTGAAAAAAAGCTGTAAAAAGCATTAAAAAACGGGTTTCAACATGAGAAAAGTGTTAAAAATTGAAAAAATCTGAATTTGACTTCATAGTCAAATTTCCCCAAAAATTCATTTTTCGGGTCAAAARACCTTGTTTTTTAGGGTTTTTGACTGAAAAAAAAACAGTAAAAAGCATAGAAAACCGGTGTTTAACATGGGAAAAATTCTAAAAATTGAAAAATCCAAATCTTTTCAAAAATTTGAATCTTCGACTAAAATCCAAATTTGACTATTCGAATTTTCTCAATTTTCGGGTTTAAAAAAATTCGATTTTCCAGCTAAAAATCAACCTAATTGCGTGTTTTTCCAGGATTTCATGATCTACCCCGAGTACGCGGATTCAGATGACGTCCGGAACATTGAAGGTTATGTAGACGTGCTTCGGAAGTCGTTGGAGCTCTCAATCGACTCAAAATCAATAGAAAAGGATGGAAAATTGTCATCAGAAATGCTAGAAACCCTTCGAAGTAATGAAATTCACTCGTTGGCAATTCCCAAGGATTTTGGTGGAATTGGAATGAATAATAAGGATATATCAAAGGTTTTCGAGGAGTTATCACTGGATTGGAACATCTATACAAGTGCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTTTGGAGCTAAAATTGCTA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTAGAATTTTTCCCATGTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTTTTGGAGCTAAAATTGCTATTTTTTGGGGTTTTCGAGTGAAAAAAAGCTGTAAAAAGCATTAAAAAACGGGTTTCAACATGAGAAAAGTGTTAAAAATTGAAAAAATCTGAATTTGACTTCATAGTCAAATTTCCCCAAAAATTCATTTTTCGGGTCAAAAAACCTTGTTTTTTAGGGTTTTTGACTGAAAAAAAAACAGTAAAAAGCATAGAAAACCGGTGTTTAACATGGGAAAAATTCTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AGTTTTGGAGCTAAAATTGCTATTTTTTGGGGTTTTCGAGTGAAAAAAAGCTGTAAAAAGCATTAAAAAACGGGTTTCAACATGAGAAAAGTGTTAAAAATTGAAAAAATCTGAATTTGACTTCATAGTCAAATTTCCCCAAAAATTCATTTTTCGGGTCAAAARACCTTGTTTTTTAGGGTTTTTGACTGAAAAAAAAACAGTAAAAAGCATAGAAAACCGGTGTTTAACATGGGAAAAATTCTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33473</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>28014</contig_pos>
        <strand>+</strand>
        <context>ACTTTTTTGA[A/G]CARAAAAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGAATGACAGGTGGGGTAATGTCTGTACAGAAAGGTTGTACTTTTTTGA</left_flank>
        <right_flank>CAGAAAAAAGGGGTAGACAGAATGAGAGAATTAGAGAAAACTGGGAGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTTAAAGAAATGAGAAGATATTATGAACTAAAAAGTTTTTGAACTATTTCTCTGCTTTTTGCCAAATCTCTGTTATTTATCCGAATTCAGGTTTTCGTTTTTCTCTTAACTTTCAGTAACTTTTTTTTACTATCAAAGAATAGAAAAATCGATGAAAACTAGTGAAAAACGAGAAAATTAATCCGGAAAATGAAAAGACTTTTAGGATACGGTAGTTGTCCTTGTGGGACCTTCGGCCACGGTCATCGGCCTTCATAAAACAAGGCAGCCCAAAAAATGAAACCTCCAAAACTGTTGAGCTGGACGGTCGAAAATGAATGACACTAGGAATAATGATTAGAATGAATGAGAATGAGATGGAGAGAGTGAGAGAGTGAGAGACATAGAACATCCAAAACGGATACTGTAGTTGGCATTTTAAGAGGGGAACAAATAAAAAAAGAATGGGTGAATGACAGGTGGGGTAATGTCTGTACAGAAAGGTTGTACTTTTTTGAGCAGAAAAAAGGGGTAGACAGAATGAGAGAATTAGAGAAAACTGGGAGGAATGGGGAAATTTTTACGAAATGGTAAAGTGAACACAAAAACAATATGAAATACTGTAACTACACTGATCTTTCACAAAAGAGCGGTTATATCAGGAAGAAGTGGAAACTCCGAATCCCTAGAAATTTGAAATTTTGAATTCTGCAAATCCAAAAGATCTTGAAATCATGATAATCTAGAAGTTTGGAAGCTCAGAAGTCCGGAGATCCGAAGATAGGACTCACTATCAGAAGTCCGGAGAGAAGTCCGGAGAAATTCCTATATGCAGAAGCTCAGAAAAGTCAACGTCTAGAAGTTTTGAAATTAAAATTTCAGGTTCTTCTGTTCATTTTTACAAAAAAAAAACAGTCAAATCCTTATCAAATTTAGTCAGCAAGGAAACATTTCAGACGTTCTAAGCGAGCATGAGGCTATCCATGAGCGAGGCTGAATTAAAAAATCTCTAGTAAATG</canonical>
            <polymorphic>AGTTTAAAGAAATGAGAAGATATTATGAACTAAAAAGTTTTTGAACTATTTCTCTGCTTTTTGCCAAATCTCTGTTATTTATCCGAATTCAGGTTTTCGTTTTTCTCTTAACTTTCAGTAACTTTTTTTTACTATCAAAGAATAGAAAAATCGATGAAAACTAGTGAAAAACGAGAAAATTAATCCGGAAAATGAAAAGACTTTTAGGATACGGTAGTTGTCCTTGTGGGACCTTCGGCCACGGTCATCGGCCTTCATAAAACAAGGCAGCCCAAAAAATGAAACCTCCAAAACTGTTGAGCTGGACGGTCGAAAATGAATGACACTAGGAATAATGATTAGAATGAATGAGAATGAGATGGAGAGAGTGAGAGAGTGAGAGACATAGAACATCCAAAACGGATACTGTAGTTGGCATTTTAAGAGGGGAACAAATAAAAAAAGAATGGGTGAATGACAGGTGGGGTAATGTCTGTACAGAAAGGTTGTACTTTTTTGARCAGAAAAAAGGGGTAGACAGAATGAGAGAATTAGAGAAAACTGGGAGGAATGGGGAAATTTTTACGAAATGGTAAAGTGAACACAAAAACAATATGAAATACTGTAACTACACTGATCTTTCACAAAAGAGCGGTTATATCAGGAAGAAGTGGAAACTCCGAATCCCTAGAAATTTGAAATTTTGAATTCTGCAAATCCAAAAGATCTTGAAATCATGATAATCTAGAAGTTTGGAAGCTCAGAAGTCCGGAGATCCGAAGATAGGACTCACTATCAGAAGTCCGGAGAGAAGTCCGGAGAAATTCCTATATGCAGAAGCTCAGAAAAGTCAACGTCTAGAAGTTTTGAAATTAAAATTTCAGGTTCTTCTGTTCATTTTTACAAAAAAAAAACAGTCAAATCCTTATCAAATTTAGTCAGCAAGGAAACATTTCAGACGTTCTAAGCGAGCATGAGGCTATCCATGAGCGAGGCTGAATTAAAAAATCTCTAGTAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAGAATGAGATGGAGAGAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTTTTGTGTTCACTTTACC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATGAGAATGAGATGGAGAGAGTGAGAGAGTGAGAGACATAGAACATCCAAAACGGATACTGTAGTTGGCATTTTAAGAGGGGAACAAATAAAAAAAGAATGGGTGAATGACAGGTGGGGTAATGTCTGTACAGAAAGGTTGTACTTTTTTGAGCAGAAAAAAGGGGTAGACAGAATGAGAGAATTAGAGAAAACTGGGAGGAATGGGGAAATTTTTACGAAATGGTAAAGTGAACACAAAAACAAT</canonical_amplicon>
		<polymorphic_amplicon>AATGAGAATGAGATGGAGAGAGTGAGAGAGTGAGAGACATAGAACATCCAAAACGGATACTGTAGTTGGCATTTTAAGAGGGGAACAAATAAAAAAAGAATGGGTGAATGACAGGTGGGGTAATGTCTGTACAGAAAGGTTGTACTTTTTTGARCAGAAAAAAGGGGTAGACAGAATGAGAGAATTAGAGAAAACTGGGAGGAATGGGGAAATTTTTACGAAATGGTAAAGTGAACACAAAAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33474</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>28017</contig_pos>
        <strand>+</strand>
        <context>TTTTTGARCA[A/G]AAAAAAGGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGACAGGTGGGGTAATGTCTGTACAGAAAGGTTGTACTTTTTTGAGCA</left_flank>
        <right_flank>AAAAAAGGGGTAGACAGAATGAGAGAATTAGAGAAAACTGGGAGGAATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAGAAATGAGAAGATATTATGAACTAAAAAGTTTTTGAACTATTTCTCTGCTTTTTGCCAAATCTCTGTTATTTATCCGAATTCAGGTTTTCGTTTTTCTCTTAACTTTCAGTAACTTTTTTTTACTATCAAAGAATAGAAAAATCGATGAAAACTAGTGAAAAACGAGAAAATTAATCCGGAAAATGAAAAGACTTTTAGGATACGGTAGTTGTCCTTGTGGGACCTTCGGCCACGGTCATCGGCCTTCATAAAACAAGGCAGCCCAAAAAATGAAACCTCCAAAACTGTTGAGCTGGACGGTCGAAAATGAATGACACTAGGAATAATGATTAGAATGAATGAGAATGAGATGGAGAGAGTGAGAGAGTGAGAGACATAGAACATCCAAAACGGATACTGTAGTTGGCATTTTAAGAGGGGAACAAATAAAAAAAGAATGGGTGAATGACAGGTGGGGTAATGTCTGTACAGAAAGGTTGTACTTTTTTGAGCAGAAAAAAGGGGTAGACAGAATGAGAGAATTAGAGAAAACTGGGAGGAATGGGGAAATTTTTACGAAATGGTAAAGTGAACACAAAAACAATATGAAATACTGTAACTACACTGATCTTTCACAAAAGAGCGGTTATATCAGGAAGAAGTGGAAACTCCGAATCCCTAGAAATTTGAAATTTTGAATTCTGCAAATCCAAAAGATCTTGAAATCATGATAATCTAGAAGTTTGGAAGCTCAGAAGTCCGGAGATCCGAAGATAGGACTCACTATCAGAAGTCCGGAGAGAAGTCCGGAGAAATTCCTATATGCAGAAGCTCAGAAAAGTCAACGTCTAGAAGTTTTGAAATTAAAATTTCAGGTTCTTCTGTTCATTTTTACAAAAAAAAAACAGTCAAATCCTTATCAAATTTAGTCAGCAAGGAAACATTTCAGACGTTCTAAGCGAGCATGAGGCTATCCATGAGCGAGGCTGAATTAAAAAATCTCTAGTAAATGAAG</canonical>
            <polymorphic>TTAAAGAAATGAGAAGATATTATGAACTAAAAAGTTTTTGAACTATTTCTCTGCTTTTTGCCAAATCTCTGTTATTTATCCGAATTCAGGTTTTCGTTTTTCTCTTAACTTTCAGTAACTTTTTTTTACTATCAAAGAATAGAAAAATCGATGAAAACTAGTGAAAAACGAGAAAATTAATCCGGAAAATGAAAAGACTTTTAGGATACGGTAGTTGTCCTTGTGGGACCTTCGGCCACGGTCATCGGCCTTCATAAAACAAGGCAGCCCAAAAAATGAAACCTCCAAAACTGTTGAGCTGGACGGTCGAAAATGAATGACACTAGGAATAATGATTAGAATGAATGAGAATGAGATGGAGAGAGTGAGAGAGTGAGAGACATAGAACATCCAAAACGGATACTGTAGTTGGCATTTTAAGAGGGGAACAAATAAAAAAAGAATGGGTGAATGACAGGTGGGGTAATGTCTGTACAGAAAGGTTGTACTTTTTTGAGCARAAAAAAGGGGTAGACAGAATGAGAGAATTAGAGAAAACTGGGAGGAATGGGGAAATTTTTACGAAATGGTAAAGTGAACACAAAAACAATATGAAATACTGTAACTACACTGATCTTTCACAAAAGAGCGGTTATATCAGGAAGAAGTGGAAACTCCGAATCCCTAGAAATTTGAAATTTTGAATTCTGCAAATCCAAAAGATCTTGAAATCATGATAATCTAGAAGTTTGGAAGCTCAGAAGTCCGGAGATCCGAAGATAGGACTCACTATCAGAAGTCCGGAGAGAAGTCCGGAGAAATTCCTATATGCAGAAGCTCAGAAAAGTCAACGTCTAGAAGTTTTGAAATTAAAATTTCAGGTTCTTCTGTTCATTTTTACAAAAAAAAAACAGTCAAATCCTTATCAAATTTAGTCAGCAAGGAAACATTTCAGACGTTCTAAGCGAGCATGAGGCTATCCATGAGCGAGGCTGAATTAAAAAATCTCTAGTAAATGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAGAATGAGATGGAGAGAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTTTTGTGTTCACTTTACC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATGAGAATGAGATGGAGAGAGTGAGAGAGTGAGAGACATAGAACATCCAAAACGGATACTGTAGTTGGCATTTTAAGAGGGGAACAAATAAAAAAAGAATGGGTGAATGACAGGTGGGGTAATGTCTGTACAGAAAGGTTGTACTTTTTTGAGCAGAAAAAAGGGGTAGACAGAATGAGAGAATTAGAGAAAACTGGGAGGAATGGGGAAATTTTTACGAAATGGTAAAGTGAACACAAAAACAAT</canonical_amplicon>
		<polymorphic_amplicon>AATGAGAATGAGATGGAGAGAGTGAGAGAGTGAGAGACATAGAACATCCAAAACGGATACTGTAGTTGGCATTTTAAGAGGGGAACAAATAAAAAAAGAATGGGTGAATGACAGGTGGGGTAATGTCTGTACAGAAAGGTTGTACTTTTTTGAGCARAAAAAAGGGGTAGACAGAATGAGAGAATTAGAGAAAACTGGGAGGAATGGGGAAATTTTTACGAAATGGTAAAGTGAACACAAAAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33477</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>100770</contig_pos>
        <strand>+</strand>
        <context>CTACGGCTGC[A/G]GCTGGATAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGTTTGGTGAAAAATGTCTGAATGACAGTCGAAGAGGCACTACGGCTGC</left_flank>
        <right_flank>GCTGGATAAAACAATCCGTTTTCCGGAAAAAATTCAAGAGAAAGTGTTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAATTAGCCGGATTCCTCTAACAGCTCTCAAGCTATGACCCTAAACATGGGTGGACGTAAGAATCTGTTATGCACTGTAGTTGACAGCCGAAGGAGAACCGACGGGCCGTCGACGGACTGTTGGCGGACAATTTGAACCCCTTGGGAACTGGGAAGTTTTGATTGAAAATCACCCAGAAAACAATATTTCATGCTAAAAATTGATAATTAAGTAATGATAGAAGCTCATTTTCCTCACATTAGAATACTTCAAAAATAGGTTGTTAACCGACTGCTAACTGGCAGTCGCGATGAATGGTAAATGACCGCTGGTTGGCGGGCTGAATTTAAGCGGAATGGAAAACTTGACTGAAAAAAAATATGATAAGCATAAAAGTCATAGAGGGGTCTGTGAATCTAAATTATGCATTTTAAGAAGTATTTCTACATGAATTAGAATCTGAGATTTGTTTGGTGAAAAATGTCTGAATGACAGTCGAAGAGGCACTACGGCTGCAGCTGGATAAAACAATCCGTTTTCCGGAAAAAATTCAAGAGAAAGTGTTTCCTGCGATTACTGATGAATGTTTGCTCTTTGGTCTTTCGGATAATTCACTACCAAATAGAGCAAAAATTATGGAAAAATGAATTCTACGATAATTGTTTTCGTGTGAATCGCAATTGACTTTTAAAAATATCTTTCCTCTATTTTTATATGTGTGGGTGTTTTTTCAAGACAAGAACATGTTCCAAATTGAATTTTATTATGTGCTCTTTTTAGCTTAGAGCAAGAAATGAGATAGTAAAGAGGTACAAAAAGAGAATCTTTGAAACAAATGGGGGAAGAGTATTTAGTGTTTTCGATAAGACAACACAATTAAAAAAGGCGAAGACAAGATCGGTTTTCGAAAACTCCAGACATGTCCTCGGTCTTAAAAAGCCGAACAGAGGAATAAGTGGGTACAGGAGACATCATCAATTCATACCAACAAAATCTACCACAGAATAAAATTTTGAA</canonical>
            <polymorphic>AAAAAATTAGCCGGATTCCTCTAACAGCTCTCAAGCTATGACCCTAAACATGGGTGGACGTAAGAATCTGTTATGCACTGTAGTTGACAGCCGAAGGAGAACCGACGGGCCGTCGACGGACTGTTGGCGGACAATTTGAACCCCTTGGGAACTGGGAAGTTTTGATTGAAAATCACCCAGAAAACAATATTTCATGCTAAAAATTGATAATTAAGTAATGATAGAAGCTCATTTTCCTCACATTAGAATACTTCAAAAATAGGTTGTTAACCGACTGCTAACTGGCAGTCGCGATGAATGGTAAATGACCGCTGGTTGGCGGGCTGAATTTAAGCGGAATGGAAAACTTGACTGAAAAAAAATATGATAAGCATAAAAGTCATAGAGGGGTCTGTGAATCTAAATTATGCATTTTAAGAAGTATTTCTACATGAATTAGAATCTGAGATTTGTTTGGTGAAAAATGTCTGAATGACAGTCGAAGAGGCACTACGGCTGCRGCTGGATAAAACAATCCGTTTTCCGGAAAAAATTCAAGAGAAAGTGTTTCCTGCGATTACTGATGAATGTTTGCTCTTTGGTCTTTCGGATAATTCACTACCAAATAGAGCAAAAATTATGGAAAAATGAATTCTACGATAATTGTTTTCGTGTGAATCGCAATTGACTTTTAAAAATATCTTTCCTCTATTTTTATATGTGTGGGTGTTTTTTCAAGACAAGAACATGTTCCAAATTGAATTTTATTATGTGCTCTTTTTAGCTTAGAGCAAGAAATGAGATAGTAAAGAGGTACAAAAAGAGAATCTTTGAAACAAATGGGGGAAGAGTATTTAGTGTTTTCGATAAGACAACACAATTAAAAAAGGCGAAGACAAGATCGGTTTTCGAAAACTCCAGACATGTCCTCGGTCTTAAAAAGCCGAACAGAGGAATAAGTGGGTACAGGAGACATCATCAATTCATACCAACAAAATCTACCACAGAATAAAATTTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>274 262 237 192 27 8</canonical_bands>
                <polymorphic_bands>536 237 192 27 8</polymorphic_bands>
            </assay>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 418 78</canonical_bands>
                <polymorphic_bands>922 78</polymorphic_bands>
            </assay>
            <assay>
                <site>CTGCAG</site>
                <isoschizomers>
                    <enzyme>BloHII</enzyme>
                    <enzyme>BstMAI</enzyme>
                    <enzyme>PstI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>262 172 159 118 96 78 55 19 17 10 8 6</canonical_bands>
                <polymorphic_bands>268 172 159 118 96 78 55 19 17 10 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>502 334 89 75</canonical_bands>
                <polymorphic_bands>591 334 75</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>499 311 190</canonical_bands>
                <polymorphic_bands>689 311</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAAAGTCATAGAGGGGTCTGT</pcr_primer_p1>
		<pcr_primer_p2>TTCCATAATTTTTGCTCTATTTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATAAAAGTCATAGAGGGGTCTGTGAATCTAAATTATGCATTTTAAGAAGTATTTCTACATGAATTAGAATCTGAGATTTGTTTGGTGAAAAATGTCTGAATGACAGTCGAAGAGGCACTACGGCTGCAGCTGGATAAAACAATCCGTTTTCCGGAAAAAATTCAAGAGAAAGTGTTTCCTGCGATTACTGATGAATGTTTGCTCTTTGGTCTTTCGGATAATTCACTACCAAATAGAGCAAAAATTATGGAA</canonical_amplicon>
		<polymorphic_amplicon>ATAAAAGTCATAGAGGGGTCTGTGAATCTAAATTATGCATTTTAAGAAGTATTTCTACATGAATTAGAATCTGAGATTTGTTTGGTGAAAAATGTCTGAATGACAGTCGAAGAGGCACTACGGCTGCRGCTGGATAAAACAATCCGTTTTCCGGAAAAAATTCAAGAGAAAGTGTTTCCTGCGATTACTGATGAATGTTTGCTCTTTGGTCTTTCGGATAATTCACTACCAAATAGAGCAAAAATTATGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33478</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>162274</contig_pos>
        <strand>+</strand>
        <context>CAATAGTTTC[C/G]CTTTCGGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTCCAAAAAACATCTAGTGTCTATTAAATTTGATTCATTTCAATAGTTTC</left_flank>
        <right_flank>CTTTCGGATTAGATATTCCAGGGTTTCGGCTGAATTATTTGAGAACTAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACACACAAACAGATATTAGAGCGGCGGCAACCGCTTCGGCCCCCGAAGAAGAAGAAGAAGACGTCGACACAAAACGATGAAACGAGGAAGAACGGAGCGGCGGCGGGTCGGGAGTTTGGCAGTGGATACGACAAAGTGATGAGAGTGTGGTGAAGAAAAAAAAGAAGAAGACGAAAAAAAAGGCGCCCAAGCACTTCAGATAAATATACATATATGGTAGCGACGACCGACCGATTGGACCACTCTTCTTCTTCTTCTTTTTTCTTTTCCGCATCATTCCCAACCACTCCAGTCAGTACAACAACACTGAAAACGAGAAAAAGAAAAACTCTGCCGCAGGGCAACAACACAAACTTTGCAAAGAAGACGAAGAGAGAGAAAATTCGGTGGGGTCGTCGAGCTTCTCATCTGTCTCTTCTTGCTCAGTTGGGCGCCGACCCCCACCGGCTCCAAAAAACATCTAGTGTCTATTAAATTTGATTCATTTCAATAGTTTCGCTTTCGGATTAGATATTCCAGGGTTTCGGCTGAATTATTTGAGAACTAAATTGAAGAAGATTATTTCGATGGAGGAGGAACCAACAAAAAAAAGAATTGCTCAGGTAAACGAAGCGGAAAAATAACTGAGGAAACAGGAAAAGAGTGACGGAAGAACCCCGAATTCTAAGATGATATGATCATTGAAGTCTGACAAATTCCGGTGTACACCAGAATTAAATAAGGAATTCTTGAAATATTTTGTGTTGGCGTTCAATTTTAAAAACTAGGAACCGGTACGGGCGCTTATTGCAATTTTTGTCATTCAACTTATTCTAGAGTTACTGTAGACAAATTCAATCTTCAGTAGCCAATATTTTTGCTATCAGCAAAAAAGTTATTTCTTGGAAACCGCGAAAGCTTATAAGCTTCAAAAAAGTTTCGATTTCTTTCTTCACTGCTTTTCGAAAAAAAGAACGAAACAAATTCAGTTCAGCACTAAATTCGTCATTTTATTTCGT</canonical>
            <polymorphic>ACACACACAAACAGATATTAGAGCGGCGGCAACCGCTTCGGCCCCCGAAGAAGAAGAAGAAGACGTCGACACAAAACGATGAAACGAGGAAGAACGGAGCGGCGGCGGGTCGGGAGTTTGGCAGTGGATACGACAAAGTGATGAGAGTGTGGTGAAGAAAAAAAAGAAGAAGACGAAAAAAAAGGCGCCCAAGCACTTCAGATAAATATACATATATGGTAGCGACGACCGACCGATTGGACCACTCTTCTTCTTCTTCTTTTTTCTTTTCCGCATCATTCCCAACCACTCCAGTCAGTACAACAACACTGAAAACGAGAAAAAGAAAAACTCTGCCGCAGGGCAACAACACAAACTTTGCAAAGAAGACGAAGAGAGAGAAAATTCGGTGGGGTCGTCGAGCTTCTCATCTGTCTCTTCTTGCTCAGTTGGGCGCCGACCCCCACCGGCTCCAAAAAACATCTAGTGTCTATTAAATTTGATTCATTTCAATAGTTTCSCTTTCGGATTAGATATTCCAGGGTTTCGGCTGAATTATTTGAGAACTAAATTGAAGAAGATTATTTCGATGGAGGAGGAACCAACAAAAAAAAGAATTGCTCAGGTAAACGAAGCGGAAAAATAACTGAGGAAACAGGAAAAGAGTGACGGAAGAACCCCGAATTCTAAGATGATATGATCATTGAAGTCTGACAAATTCCGGTGTACACCAGAATTAAATAAGGAATTCTTGAAATATTTTGTGTTGGCGTTCAATTTTAAAAACTAGGAACCGGTACGGGCGCTTATTGCAATTTTTGTCATTCAACTTATTCTAGAGTTACTGTAGACAAATTCAATCTTCAGTAGCCAATATTTTTGCTATCAGCAAAAAAGTTATTTCTTGGAAACCGCGAAAGCTTATAAGCTTCAAAAAAGTTTCGATTTCTTTCTTCACTGCTTTTCGAAAAAAAGAACGAAACAAATTCAGTTCAGCACTAAATTCGTCATTTTATTTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAGACGAAGAGAGAGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTTTACCTGAGCAATTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGAAGACGAAGAGAGAGAAAATTCGGTGGGGTCGTCGAGCTTCTCATCTGTCTCTTCTTGCTCAGTTGGGCGCCGACCCCCACCGGCTCCAAAAAACATCTAGTGTCTATTAAATTTGATTCATTTCAATAGTTTCGCTTTCGGATTAGATATTCCAGGGTTTCGGCTGAATTATTTGAGAACTAAATTGAAGAAGATTATTTCGATGGAGGAGGAACCAACAAAAAAAAGAATTGCTCAGGTAAAC</canonical_amplicon>
		<polymorphic_amplicon>AAGAAGACGAAGAGAGAGAAAATTCGGTGGGGTCGTCGAGCTTCTCATCTGTCTCTTCTTGCTCAGTTGGGCGCCGACCCCCACCGGCTCCAAAAAACATCTAGTGTCTATTAAATTTGATTCATTTCAATAGTTTCSCTTTCGGATTAGATATTCCAGGGTTTCGGCTGAATTATTTGAGAACTAAATTGAAGAAGATTATTTCGATGGAGGAGGAACCAACAAAAAAAAGAATTGCTCAGGTAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33479</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>174077</contig_pos>
        <strand></strand>
        <context>ttaactttct[A/G]ccagtttgac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGTATCGGTCAATAAGATACACAAAAATGTATTTTCCAGTTAACTTTCT</left_flank>
        <right_flank>CCAGTTTGACCATTTTCAGGAGTCTGTTTTTGTGCTGTATTTTCAAAAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACGTTAAAAAAAGAAGAAGCAGAAGAAGAAAAAGATGATGGAGGTAGTAGCATGCACATACTCGAATCACTGACACAACAACCACACGCACTCCTTACTCGCTTGCTGAATTATTCAAAACTCTGACCGTTGGCTCAAAAATTCAAAGTAAGTTGAGAGTAATTTCCTCAACTTTCTTTCTCTTATTTCGTTTGTTACTATACAGAAGCTAAAGAAAAAAACTAACGTGGAACAATGATGGAAGCAGGAACAAGACCATGCTTTGTTGGTTGATCACACAGAACAACTTGAATATATTCAGCGCAATCTGTGGCTTGATCTTCGACAATCTGGAAGAAGAGAATATTTTCAGTTCTAAAATTACAGTTGTTCCTAGAATGATATGAAGATTTTTTATTTGTGAACACGATACAACATTTTAGTATTTATAGAAGAACCGTGTGTAGAGAGTATCGGTCAATAAGATACACAAAAATGTATTTTCCAGTTAACTTTCTACCAGTTTGACCATTTTCAGGAGTCTGTTTTTGTGCTGTATTTTCAAAAAACTATGTGAATTCAAAGTTACTAATCTAGGGATGTTTTACACCCTCCAAAAATTTTTAAGTAATCGGAAACTTAACAGCTAAGCTTTTGAAAATAGGCAAACTGGAAGAAAATCAAATGGAAAATACGCTTTTGCATATCTGTATATAATTCATAACATTGCAGAAGATTGGCTATCAAAAATCTGAAAATCTTACTTCAACTCGGTCTCCCTTGTGAACTGTTAAGTGACCTTCAGTTTGCCCATCGAAGTCGGCCGTCACAATCCATACTTCCGAGGACTGCTGCAAAAAGGAAACAATTTTTCAGAACTTATTTTTTGTTATATTGTCTGATGGTCCCCTGGGTCATCATTTGCCACTCAAATCATTCAAAATCAGTGACAGTGTCTGGTGACAGAAGTGTCACAATGAAGGAAAACAATCTTCCTTCTTCTTCTTCTTCTTCTTCTG</canonical>
            <polymorphic>TGACGTTAAAAAAAGAAGAAGCAGAAGAAGAAAAAGATGATGGAGGTAGTAGCATGCACATACTCGAATCACTGACACAACAACCACACGCACTCCTTACTCGCTTGCTGAATTATTCAAAACTCTGACCGTTGGCTCAAAAATTCAAAGTAAGTTGAGAGTAATTTCCTCAACTTTCTTTCTCTTATTTCGTTTGTTACTATACAGAAGCTAAAGAAAAAAACTAACGTGGAACAATGATGGAAGCAGGAACAAGACCATGCTTTGTTGGTTGATCACACAGAACAACTTGAATATATTCAGCGCAATCTGTGGCTTGATCTTCGACAATCTGGAAGAAGAGAATATTTTCAGTTCTAAAATTACAGTTGTTCCTAGAATGATATGAAGATTTTTTATTTGTGAACACGATACAACATTTTAGTATTTATAGAAGAACCGTGTGTAGAGAGTATCGGTCAATAAGATACACAAAAATGTATTTTCCAGTTAACTTTCTRCCAGTTTGACCATTTTCAGGAGTCTGTTTTTGTGCTGTATTTTCAAAAAACTATGTGAATTCAAAGTTACTAATCTAGGGATGTTTTACACCCTCCAAAAATTTTTAAGTAATCGGAAACTTAACAGCTAAGCTTTTGAAAATAGGCAAACTGGAAGAAAATCAAATGGAAAATACGCTTTTGCATATCTGTATATAATTCATAACATTGCAGAAGATTGGCTATCAAAAATCTGAAAATCTTACTTCAACTCGGTCTCCCTTGTGAACTGTTAAGTGACCTTCAGTTTGCCCATCGAAGTCGGCCGTCACAATCCATACTTCCGAGGACTGCTGCAAAAAGGAAACAATTTTTCAGAACTTATTTTTTGTTATATTGTCTGATGGTCCCCTGGGTCATCATTTGCCACTCAAATCATTCAAAATCAGTGACAGTGTCTGGTGACAGAAGTGTCACAATGAAGGAAAACAATCTTCCTTCTTCTTCTTCTTCTTCTTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTATAGAAGAACCGTGTGTAGAG</pcr_primer_p1>
		<pcr_primer_p2>CAATCTTCTGCAATGTTATGAAT</pcr_primer_p2>
		<pcr_amplicon_size>294</pcr_amplicon_size>
		<canonical_amplicon>TTTATAGAAGAACCGTGTGTAGAGAGTATCGGTCAATAAGATACACAAAAATGTATTTTCCAGTTAACTTTCTACCAGTTTGACCATTTTCAGGAGTCTGTTTTTGTGCTGTATTTTCAAAAAACTATGTGAATTCAAAGTTACTAATCTAGGGATGTTTTACACCCTCCAAAAATTTTTAAGTAATCGGAAACTTAACAGCTAAGCTTTTGAAAATAGGCAAACTGGAAGAAAATCAAATGGAAAATACGCTTTTGCATATCTGTATATAATTCATAACATTGCAGAAGATTG</canonical_amplicon>
		<polymorphic_amplicon>TTTATAGAAGAACCGTGTGTAGAGAGTATCGGTCAATAAGATACACAAAAATGTATTTTCCAGTTAACTTTCTRCCAGTTTGACCATTTTCAGGAGTCTGTTTTTGTGCTGTATTTTCAAAAAACTATGTGAATTCAAAGTTACTAATCTAGGGATGTTTTACACCCTCCAAAAATTTTTAAGTAATCGGAAACTTAACAGCTAAGCTTTTGAAAATAGGCAAACTGGAAGAAAATCAAATGGAAAATACGCTTTTGCATATCTGTATATAATTCATAACATTGCAGAAGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33480</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>197280</contig_pos>
        <strand>+</strand>
        <context>AGATAAAATG[A/G]CGGCARTAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATG</left_flank>
        <right_flank>CGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGAACAGGCGGCTCTTGTCAAAAGAGAGTGAGTAGGATACCGCAAAAAAATAGAGAGCAAAAGTTTCGAAATATTCCTCAAATCAACGAAAGCGATAGAGGATTTAATAAAATCCCCAGAGAATTTGAAAAGCCATTAACCTGTATAGGGATTGGTTTCTTCCAGTTAAAGAGCTTTTGATATTACCGCATATTTCAAAACGTCTCCAAATAGTTTTCATGTAGTGCTCTTGCCCGCCCGCTCCATTAACATCAAAACGACACATTTAAAAATAATGTTATGTTGTGTTCTTCACCAGATGTTCGATGATAGATGTACAACAAACGTTTTTCGCCTACTTCTCTCTTAGCCGTCTCATTATTTCTCTCCTTTTTTCCGGCGAAACATTCGTTTGAAAGAGATAGAGAGAGGGATTTTGCTATGTAGAAAAATGAATCAACAGCCGCTTCTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACTTCTTCGATCAGAGGAAGAATTCGTATCATCTCTGAGAACCTGCGTTGACGATTACATCAAAGTTCTCGATGATCCTGGAGTACCAGAAGCAGTCAAAAAACATCGTGAAGAGCTCGCTCTGAATATTCCAGAGCTCTACAATTTTCACGCAAAGTAACAAGCAATCTAGAAAAGCATTCAAAAAAATTATACAATTTCAGTGTTATGCTAAAAGGCCTCAATTACTATTCTGACGATCCGGGCAAAGTCGGTCAGACATTTGTACGCCTTGAGAAAGATTTTGAGAGTCATGTGGAGTTTTACAAACAGTACGCAGATACTCTGAAACTTCTTGAAGAACCAGAAATAAAACGT</canonical>
            <polymorphic>ACGAACAGGCGGCTCTTGTCAAAAGAGAGTGAGTAGGATACCGCAAAAAAATAGAGAGCAAAAGTTTCGAAATATTCCTCAAATCAACGAAAGCGATAGAGGATTTAATAAAATCCCCAGAGAATTTGAAAAGCCATTAACCTGTATAGGGATTGGTTTCTTCCAGTTAAAGAGCTTTTGATATTACCGCATATTTCAAAACGTCTCCAAATAGTTTTCATGTAGTGCTCTTGCCCGCCCGCTCCATTAACATCAAAACGACACATTTAAAAATAATGTTATGTTGTGTTCTTCACCAGATGTTCGATGATAGATGTACAACAAACGTTTTTCGCCTACTTCTCTCTTAGCCGTCTCATTATTTCTCTCCTTTTTTCCGGCGAAACATTCGTTTGAAAGAGATAGAGAGAGGGATTTTGCTATGTAGAAAAATGAATCAACAGCCGCTTCTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGRCGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACTTCTTCGATCAGAGGAAGAATTCGTATCATCTCTGAGAACCTGCGTTGACGATTACATCAAAGTTCTCGATGATCCTGGAGTACCAGAAGCAGTCAAAAAACATCGTGAAGAGCTCGCTCTGAATATTCCAGAGCTCTACAATTTTCACGCAAAGTAACAAGCAATCTAGAAAAGCATTCAAAAAAATTATACAATTTCAGTGTTATGCTAAAAGGCCTCAATTACTATTCTGACGATCCGGGCAAAGTCGGTCAGACATTTGTACGCCTTGAGAAAGATTTTGAGAGTCATGTGGAGTTTTACAAACAGTACGCAGATACTCTGAAACTTCTTGAAGAACCAGAAATAAAACGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAGATAGAGAGAGGGATTTTG</pcr_primer_p1>
		<pcr_primer_p2>AGTTCATGGTAGACTTGACTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAGATAGAGAGAGGGATTTTGCTATGTAGAAAAATGAATCAACAGCCGCTTCTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACT</canonical_amplicon>
		<polymorphic_amplicon>AAGAGATAGAGAGAGGGATTTTGCTATGTAGAAAAATGAATCAACAGCCGCTTCTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGRCGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33481</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>197306</contig_pos>
        <strand>+</strand>
        <context>CAAAATGGCA[A/G]GTCGAGCCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCA</left_flank>
        <right_flank>GTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTGAGTAGGATACCGCAAAAAAATAGAGAGCAAAAGTTTCGAAATATTCCTCAAATCAACGAAAGCGATAGAGGATTTAATAAAATCCCCAGAGAATTTGAAAAGCCATTAACCTGTATAGGGATTGGTTTCTTCCAGTTAAAGAGCTTTTGATATTACCGCATATTTCAAAACGTCTCCAAATAGTTTTCATGTAGTGCTCTTGCCCGCCCGCTCCATTAACATCAAAACGACACATTTAAAAATAATGTTATGTTGTGTTCTTCACCAGATGTTCGATGATAGATGTACAACAAACGTTTTTCGCCTACTTCTCTCTTAGCCGTCTCATTATTTCTCTCCTTTTTTCCGGCGAAACATTCGTTTGAAAGAGATAGAGAGAGGGATTTTGCTATGTAGAAAAATGAATCAACAGCCGCTTCTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACTTCTTCGATCAGAGGAAGAATTCGTATCATCTCTGAGAACCTGCGTTGACGATTACATCAAAGTTCTCGATGATCCTGGAGTACCAGAAGCAGTCAAAAAACATCGTGAAGAGCTCGCTCTGAATATTCCAGAGCTCTACAATTTTCACGCAAAGTAACAAGCAATCTAGAAAAGCATTCAAAAAAATTATACAATTTCAGTGTTATGCTAAAAGGCCTCAATTACTATTCTGACGATCCGGGCAAAGTCGGTCAGACATTTGTACGCCTTGAGAAAGATTTTGAGAGTCATGTGGAGTTTTACAAACAGTACGCAGATACTCTGAAACTTCTTGAAGAACCAGAAATAAAACGTTTCTTTGAGGTAACGATCACTGAACT</canonical>
            <polymorphic>GAGTGAGTAGGATACCGCAAAAAAATAGAGAGCAAAAGTTTCGAAATATTCCTCAAATCAACGAAAGCGATAGAGGATTTAATAAAATCCCCAGAGAATTTGAAAAGCCATTAACCTGTATAGGGATTGGTTTCTTCCAGTTAAAGAGCTTTTGATATTACCGCATATTTCAAAACGTCTCCAAATAGTTTTCATGTAGTGCTCTTGCCCGCCCGCTCCATTAACATCAAAACGACACATTTAAAAATAATGTTATGTTGTGTTCTTCACCAGATGTTCGATGATAGATGTACAACAAACGTTTTTCGCCTACTTCTCTCTTAGCCGTCTCATTATTTCTCTCCTTTTTTCCGGCGAAACATTCGTTTGAAAGAGATAGAGAGAGGGATTTTGCTATGTAGAAAAATGAATCAACAGCCGCTTCTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCARGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACTTCTTCGATCAGAGGAAGAATTCGTATCATCTCTGAGAACCTGCGTTGACGATTACATCAAAGTTCTCGATGATCCTGGAGTACCAGAAGCAGTCAAAAAACATCGTGAAGAGCTCGCTCTGAATATTCCAGAGCTCTACAATTTTCACGCAAAGTAACAAGCAATCTAGAAAAGCATTCAAAAAAATTATACAATTTCAGTGTTATGCTAAAAGGCCTCAATTACTATTCTGACGATCCGGGCAAAGTCGGTCAGACATTTGTACGCCTTGAGAAAGATTTTGAGAGTCATGTGGAGTTTTACAAACAGTACGCAGATACTCTGAAACTTCTTGAAGAACCAGAAATAAAACGTTTCTTTGAGGTAACGATCACTGAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAGATAGAGAGAGGGATTTTG</pcr_primer_p1>
		<pcr_primer_p2>AGTTCATGGTAGACTTGACTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAGATAGAGAGAGGGATTTTGCTATGTAGAAAAATGAATCAACAGCCGCTTCTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACT</canonical_amplicon>
		<polymorphic_amplicon>AAGAGATAGAGAGAGGGATTTTGCTATGTAGAAAAATGAATCAACAGCCGCTTCTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCARGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33482</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>197336</contig_pos>
        <strand>+</strand>
        <context>GCACTGGCCA[A/G]TAGACAARAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCA</left_flank>
        <right_flank>TAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCAAAAGTTTCGAAATATTCCTCAAATCAACGAAAGCGATAGAGGATTTAATAAAATCCCCAGAGAATTTGAAAAGCCATTAACCTGTATAGGGATTGGTTTCTTCCAGTTAAAGAGCTTTTGATATTACCGCATATTTCAAAACGTCTCCAAATAGTTTTCATGTAGTGCTCTTGCCCGCCCGCTCCATTAACATCAAAACGACACATTTAAAAATAATGTTATGTTGTGTTCTTCACCAGATGTTCGATGATAGATGTACAACAAACGTTTTTCGCCTACTTCTCTCTTAGCCGTCTCATTATTTCTCTCCTTTTTTCCGGCGAAACATTCGTTTGAAAGAGATAGAGAGAGGGATTTTGCTATGTAGAAAAATGAATCAACAGCCGCTTCTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACTTCTTCGATCAGAGGAAGAATTCGTATCATCTCTGAGAACCTGCGTTGACGATTACATCAAAGTTCTCGATGATCCTGGAGTACCAGAAGCAGTCAAAAAACATCGTGAAGAGCTCGCTCTGAATATTCCAGAGCTCTACAATTTTCACGCAAAGTAACAAGCAATCTAGAAAAGCATTCAAAAAAATTATACAATTTCAGTGTTATGCTAAAAGGCCTCAATTACTATTCTGACGATCCGGGCAAAGTCGGTCAGACATTTGTACGCCTTGAGAAAGATTTTGAGAGTCATGTGGAGTTTTACAAACAGTACGCAGATACTCTGAAACTTCTTGAAGAACCAGAAATAAAACGTTTCTTTGAGGTAACGATCACTGAACTTGCATTCCTCCATTTGCCGCGAATTTTTTT</canonical>
            <polymorphic>AGCAAAAGTTTCGAAATATTCCTCAAATCAACGAAAGCGATAGAGGATTTAATAAAATCCCCAGAGAATTTGAAAAGCCATTAACCTGTATAGGGATTGGTTTCTTCCAGTTAAAGAGCTTTTGATATTACCGCATATTTCAAAACGTCTCCAAATAGTTTTCATGTAGTGCTCTTGCCCGCCCGCTCCATTAACATCAAAACGACACATTTAAAAATAATGTTATGTTGTGTTCTTCACCAGATGTTCGATGATAGATGTACAACAAACGTTTTTCGCCTACTTCTCTCTTAGCCGTCTCATTATTTCTCTCCTTTTTTCCGGCGAAACATTCGTTTGAAAGAGATAGAGAGAGGGATTTTGCTATGTAGAAAAATGAATCAACAGCCGCTTCTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCARTAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACTTCTTCGATCAGAGGAAGAATTCGTATCATCTCTGAGAACCTGCGTTGACGATTACATCAAAGTTCTCGATGATCCTGGAGTACCAGAAGCAGTCAAAAAACATCGTGAAGAGCTCGCTCTGAATATTCCAGAGCTCTACAATTTTCACGCAAAGTAACAAGCAATCTAGAAAAGCATTCAAAAAAATTATACAATTTCAGTGTTATGCTAAAAGGCCTCAATTACTATTCTGACGATCCGGGCAAAGTCGGTCAGACATTTGTACGCCTTGAGAAAGATTTTGAGAGTCATGTGGAGTTTTACAAACAGTACGCAGATACTCTGAAACTTCTTGAAGAACCAGAAATAAAACGTTTCTTTGAGGTAACGATCACTGAACTTGCATTCCTCCATTTGCCGCGAATTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAGATAGAGAGAGGGATTTTG</pcr_primer_p1>
		<pcr_primer_p2>AGTTCATGGTAGACTTGACTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAGATAGAGAGAGGGATTTTGCTATGTAGAAAAATGAATCAACAGCCGCTTCTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACT</canonical_amplicon>
		<polymorphic_amplicon>AAGAGATAGAGAGAGGGATTTTGCTATGTAGAAAAATGAATCAACAGCCGCTTCTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCARTAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33483</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>197344</contig_pos>
        <strand>+</strand>
        <context>CARTAGACAA[A/G]AAGTGGAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAA</left_flank>
        <right_flank>AAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGAAATATTCCTCAAATCAACGAAAGCGATAGAGGATTTAATAAAATCCCCAGAGAATTTGAAAAGCCATTAACCTGTATAGGGATTGGTTTCTTCCAGTTAAAGAGCTTTTGATATTACCGCATATTTCAAAACGTCTCCAAATAGTTTTCATGTAGTGCTCTTGCCCGCCCGCTCCATTAACATCAAAACGACACATTTAAAAATAATGTTATGTTGTGTTCTTCACCAGATGTTCGATGATAGATGTACAACAAACGTTTTTCGCCTACTTCTCTCTTAGCCGTCTCATTATTTCTCTCCTTTTTTCCGGCGAAACATTCGTTTGAAAGAGATAGAGAGAGGGATTTTGCTATGTAGAAAAATGAATCAACAGCCGCTTCTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACTTCTTCGATCAGAGGAAGAATTCGTATCATCTCTGAGAACCTGCGTTGACGATTACATCAAAGTTCTCGATGATCCTGGAGTACCAGAAGCAGTCAAAAAACATCGTGAAGAGCTCGCTCTGAATATTCCAGAGCTCTACAATTTTCACGCAAAGTAACAAGCAATCTAGAAAAGCATTCAAAAAAATTATACAATTTCAGTGTTATGCTAAAAGGCCTCAATTACTATTCTGACGATCCGGGCAAAGTCGGTCAGACATTTGTACGCCTTGAGAAAGATTTTGAGAGTCATGTGGAGTTTTACAAACAGTACGCAGATACTCTGAAACTTCTTGAAGAACCAGAAATAAAACGTTTCTTTGAGGTAACGATCACTGAACTTGCATTCCTCCATTTGCCGCGAATTTTTTTATTGGTTT</canonical>
            <polymorphic>TTTCGAAATATTCCTCAAATCAACGAAAGCGATAGAGGATTTAATAAAATCCCCAGAGAATTTGAAAAGCCATTAACCTGTATAGGGATTGGTTTCTTCCAGTTAAAGAGCTTTTGATATTACCGCATATTTCAAAACGTCTCCAAATAGTTTTCATGTAGTGCTCTTGCCCGCCCGCTCCATTAACATCAAAACGACACATTTAAAAATAATGTTATGTTGTGTTCTTCACCAGATGTTCGATGATAGATGTACAACAAACGTTTTTCGCCTACTTCTCTCTTAGCCGTCTCATTATTTCTCTCCTTTTTTCCGGCGAAACATTCGTTTGAAAGAGATAGAGAGAGGGATTTTGCTATGTAGAAAAATGAATCAACAGCCGCTTCTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAARAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACTTCTTCGATCAGAGGAAGAATTCGTATCATCTCTGAGAACCTGCGTTGACGATTACATCAAAGTTCTCGATGATCCTGGAGTACCAGAAGCAGTCAAAAAACATCGTGAAGAGCTCGCTCTGAATATTCCAGAGCTCTACAATTTTCACGCAAAGTAACAAGCAATCTAGAAAAGCATTCAAAAAAATTATACAATTTCAGTGTTATGCTAAAAGGCCTCAATTACTATTCTGACGATCCGGGCAAAGTCGGTCAGACATTTGTACGCCTTGAGAAAGATTTTGAGAGTCATGTGGAGTTTTACAAACAGTACGCAGATACTCTGAAACTTCTTGAAGAACCAGAAATAAAACGTTTCTTTGAGGTAACGATCACTGAACTTGCATTCCTCCATTTGCCGCGAATTTTTTTATTGGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAGATAGAGAGAGGGATTTTG</pcr_primer_p1>
		<pcr_primer_p2>AGTTCATGGTAGACTTGACTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAGATAGAGAGAGGGATTTTGCTATGTAGAAAAATGAATCAACAGCCGCTTCTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACT</canonical_amplicon>
		<polymorphic_amplicon>AAGAGATAGAGAGAGGGATTTTGCTATGTAGAAAAATGAATCAACAGCCGCTTCTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAARAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33484</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>197363</contig_pos>
        <strand>+</strand>
        <context>TCATTGGGAA[A/G]CTATAGCAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAA</left_flank>
        <right_flank>CTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAACGAAAGCGATAGAGGATTTAATAAAATCCCCAGAGAATTTGAAAAGCCATTAACCTGTATAGGGATTGGTTTCTTCCAGTTAAAGAGCTTTTGATATTACCGCATATTTCAAAACGTCTCCAAATAGTTTTCATGTAGTGCTCTTGCCCGCCCGCTCCATTAACATCAAAACGACACATTTAAAAATAATGTTATGTTGTGTTCTTCACCAGATGTTCGATGATAGATGTACAACAAACGTTTTTCGCCTACTTCTCTCTTAGCCGTCTCATTATTTCTCTCCTTTTTTCCGGCGAAACATTCGTTTGAAAGAGATAGAGAGAGGGATTTTGCTATGTAGAAAAATGAATCAACAGCCGCTTCTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACTTCTTCGATCAGAGGAAGAATTCGTATCATCTCTGAGAACCTGCGTTGACGATTACATCAAAGTTCTCGATGATCCTGGAGTACCAGAAGCAGTCAAAAAACATCGTGAAGAGCTCGCTCTGAATATTCCAGAGCTCTACAATTTTCACGCAAAGTAACAAGCAATCTAGAAAAGCATTCAAAAAAATTATACAATTTCAGTGTTATGCTAAAAGGCCTCAATTACTATTCTGACGATCCGGGCAAAGTCGGTCAGACATTTGTACGCCTTGAGAAAGATTTTGAGAGTCATGTGGAGTTTTACAAACAGTACGCAGATACTCTGAAACTTCTTGAAGAACCAGAAATAAAACGTTTCTTTGAGGTAACGATCACTGAACTTGCATTCCTCCATTTGCCGCGAATTTTTTTATTGGTTTCCTTCTTTTTTTTCTTGTT</canonical>
            <polymorphic>TCAACGAAAGCGATAGAGGATTTAATAAAATCCCCAGAGAATTTGAAAAGCCATTAACCTGTATAGGGATTGGTTTCTTCCAGTTAAAGAGCTTTTGATATTACCGCATATTTCAAAACGTCTCCAAATAGTTTTCATGTAGTGCTCTTGCCCGCCCGCTCCATTAACATCAAAACGACACATTTAAAAATAATGTTATGTTGTGTTCTTCACCAGATGTTCGATGATAGATGTACAACAAACGTTTTTCGCCTACTTCTCTCTTAGCCGTCTCATTATTTCTCTCCTTTTTTCCGGCGAAACATTCGTTTGAAAGAGATAGAGAGAGGGATTTTGCTATGTAGAAAAATGAATCAACAGCCGCTTCTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAARCTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACTTCTTCGATCAGAGGAAGAATTCGTATCATCTCTGAGAACCTGCGTTGACGATTACATCAAAGTTCTCGATGATCCTGGAGTACCAGAAGCAGTCAAAAAACATCGTGAAGAGCTCGCTCTGAATATTCCAGAGCTCTACAATTTTCACGCAAAGTAACAAGCAATCTAGAAAAGCATTCAAAAAAATTATACAATTTCAGTGTTATGCTAAAAGGCCTCAATTACTATTCTGACGATCCGGGCAAAGTCGGTCAGACATTTGTACGCCTTGAGAAAGATTTTGAGAGTCATGTGGAGTTTTACAAACAGTACGCAGATACTCTGAAACTTCTTGAAGAACCAGAAATAAAACGTTTCTTTGAGGTAACGATCACTGAACTTGCATTCCTCCATTTGCCGCGAATTTTTTTATTGGTTTCCTTCTTTTTTTTCTTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAGATAGAGAGAGGGATTTTG</pcr_primer_p1>
		<pcr_primer_p2>AGTTCATGGTAGACTTGACTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAGATAGAGAGAGGGATTTTGCTATGTAGAAAAATGAATCAACAGCCGCTTCTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACT</canonical_amplicon>
		<polymorphic_amplicon>AAGAGATAGAGAGAGGGATTTTGCTATGTAGAAAAATGAATCAACAGCCGCTTCTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAARCTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33485</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>197381</contig_pos>
        <strand>+</strand>
        <context>AATATACATT[A/G]CATATAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATT</left_flank>
        <right_flank>CATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACTTCTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTAATAAAATCCCCAGAGAATTTGAAAAGCCATTAACCTGTATAGGGATTGGTTTCTTCCAGTTAAAGAGCTTTTGATATTACCGCATATTTCAAAACGTCTCCAAATAGTTTTCATGTAGTGCTCTTGCCCGCCCGCTCCATTAACATCAAAACGACACATTTAAAAATAATGTTATGTTGTGTTCTTCACCAGATGTTCGATGATAGATGTACAACAAACGTTTTTCGCCTACTTCTCTCTTAGCCGTCTCATTATTTCTCTCCTTTTTTCCGGCGAAACATTCGTTTGAAAGAGATAGAGAGAGGGATTTTGCTATGTAGAAAAATGAATCAACAGCCGCTTCTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACTTCTTCGATCAGAGGAAGAATTCGTATCATCTCTGAGAACCTGCGTTGACGATTACATCAAAGTTCTCGATGATCCTGGAGTACCAGAAGCAGTCAAAAAACATCGTGAAGAGCTCGCTCTGAATATTCCAGAGCTCTACAATTTTCACGCAAAGTAACAAGCAATCTAGAAAAGCATTCAAAAAAATTATACAATTTCAGTGTTATGCTAAAAGGCCTCAATTACTATTCTGACGATCCGGGCAAAGTCGGTCAGACATTTGTACGCCTTGAGAAAGATTTTGAGAGTCATGTGGAGTTTTACAAACAGTACGCAGATACTCTGAAACTTCTTGAAGAACCAGAAATAAAACGTTTCTTTGAGGTAACGATCACTGAACTTGCATTCCTCCATTTGCCGCGAATTTTTTTATTGGTTTCCTTCTTTTTTTTCTTGTTTGAATTTTTCTTTTAAAT</canonical>
            <polymorphic>GATTTAATAAAATCCCCAGAGAATTTGAAAAGCCATTAACCTGTATAGGGATTGGTTTCTTCCAGTTAAAGAGCTTTTGATATTACCGCATATTTCAAAACGTCTCCAAATAGTTTTCATGTAGTGCTCTTGCCCGCCCGCTCCATTAACATCAAAACGACACATTTAAAAATAATGTTATGTTGTGTTCTTCACCAGATGTTCGATGATAGATGTACAACAAACGTTTTTCGCCTACTTCTCTCTTAGCCGTCTCATTATTTCTCTCCTTTTTTCCGGCGAAACATTCGTTTGAAAGAGATAGAGAGAGGGATTTTGCTATGTAGAAAAATGAATCAACAGCCGCTTCTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTRCATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACTTCTTCGATCAGAGGAAGAATTCGTATCATCTCTGAGAACCTGCGTTGACGATTACATCAAAGTTCTCGATGATCCTGGAGTACCAGAAGCAGTCAAAAAACATCGTGAAGAGCTCGCTCTGAATATTCCAGAGCTCTACAATTTTCACGCAAAGTAACAAGCAATCTAGAAAAGCATTCAAAAAAATTATACAATTTCAGTGTTATGCTAAAAGGCCTCAATTACTATTCTGACGATCCGGGCAAAGTCGGTCAGACATTTGTACGCCTTGAGAAAGATTTTGAGAGTCATGTGGAGTTTTACAAACAGTACGCAGATACTCTGAAACTTCTTGAAGAACCAGAAATAAAACGTTTCTTTGAGGTAACGATCACTGAACTTGCATTCCTCCATTTGCCGCGAATTTTTTTATTGGTTTCCTTCTTTTTTTTCTTGTTTGAATTTTTCTTTTAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGAAGAGTAGGAGAAAATGAGA</pcr_primer_p1>
		<pcr_primer_p2>ATCATCGAGAACTTTGATGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACTTCTTCGATCAGAGGAAGAATTCGTATCATCTCTGAGAACCTGCGTTGACGATTACATCAAAGTTCTCGATGAT</canonical_amplicon>
		<polymorphic_amplicon>AGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTRCATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACTTCTTCGATCAGAGGAAGAATTCGTATCATCTCTGAGAACCTGCGTTGACGATTACATCAAAGTTCTCGATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33486</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>197402</contig_pos>
        <strand>+</strand>
        <context>AACAAATTGT[G/T]TTTCAGTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGT</left_flank>
        <right_flank>TTTCAGTCAAGTCTACCATGAACTTCTTCGATCAGAGGAAGAATTCGTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTGAAAAGCCATTAACCTGTATAGGGATTGGTTTCTTCCAGTTAAAGAGCTTTTGATATTACCGCATATTTCAAAACGTCTCCAAATAGTTTTCATGTAGTGCTCTTGCCCGCCCGCTCCATTAACATCAAAACGACACATTTAAAAATAATGTTATGTTGTGTTCTTCACCAGATGTTCGATGATAGATGTACAACAAACGTTTTTCGCCTACTTCTCTCTTAGCCGTCTCATTATTTCTCTCCTTTTTTCCGGCGAAACATTCGTTTGAAAGAGATAGAGAGAGGGATTTTGCTATGTAGAAAAATGAATCAACAGCCGCTTCTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACTTCTTCGATCAGAGGAAGAATTCGTATCATCTCTGAGAACCTGCGTTGACGATTACATCAAAGTTCTCGATGATCCTGGAGTACCAGAAGCAGTCAAAAAACATCGTGAAGAGCTCGCTCTGAATATTCCAGAGCTCTACAATTTTCACGCAAAGTAACAAGCAATCTAGAAAAGCATTCAAAAAAATTATACAATTTCAGTGTTATGCTAAAAGGCCTCAATTACTATTCTGACGATCCGGGCAAAGTCGGTCAGACATTTGTACGCCTTGAGAAAGATTTTGAGAGTCATGTGGAGTTTTACAAACAGTACGCAGATACTCTGAAACTTCTTGAAGAACCAGAAATAAAACGTTTCTTTGAGGTAACGATCACTGAACTTGCATTCCTCCATTTGCCGCGAATTTTTTTATTGGTTTCCTTCTTTTTTTTCTTGTTTGAATTTTTCTTTTAAATTCCCAAATTTTAAATCATTCT</canonical>
            <polymorphic>AATTTGAAAAGCCATTAACCTGTATAGGGATTGGTTTCTTCCAGTTAAAGAGCTTTTGATATTACCGCATATTTCAAAACGTCTCCAAATAGTTTTCATGTAGTGCTCTTGCCCGCCCGCTCCATTAACATCAAAACGACACATTTAAAAATAATGTTATGTTGTGTTCTTCACCAGATGTTCGATGATAGATGTACAACAAACGTTTTTCGCCTACTTCTCTCTTAGCCGTCTCATTATTTCTCTCCTTTTTTCCGGCGAAACATTCGTTTGAAAGAGATAGAGAGAGGGATTTTGCTATGTAGAAAAATGAATCAACAGCCGCTTCTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTKTTTCAGTCAAGTCTACCATGAACTTCTTCGATCAGAGGAAGAATTCGTATCATCTCTGAGAACCTGCGTTGACGATTACATCAAAGTTCTCGATGATCCTGGAGTACCAGAAGCAGTCAAAAAACATCGTGAAGAGCTCGCTCTGAATATTCCAGAGCTCTACAATTTTCACGCAAAGTAACAAGCAATCTAGAAAAGCATTCAAAAAAATTATACAATTTCAGTGTTATGCTAAAAGGCCTCAATTACTATTCTGACGATCCGGGCAAAGTCGGTCAGACATTTGTACGCCTTGAGAAAGATTTTGAGAGTCATGTGGAGTTTTACAAACAGTACGCAGATACTCTGAAACTTCTTGAAGAACCAGAAATAAAACGTTTCTTTGAGGTAACGATCACTGAACTTGCATTCCTCCATTTGCCGCGAATTTTTTTATTGGTTTCCTTCTTTTTTTTCTTGTTTGAATTTTTCTTTTAAATTCCCAAATTTTAAATCATTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGAAGAGTAGGAGAAAATGAGA</pcr_primer_p1>
		<pcr_primer_p2>ATCATCGAGAACTTTGATGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACTTCTTCGATCAGAGGAAGAATTCGTATCATCTCTGAGAACCTGCGTTGACGATTACATCAAAGTTCTCGATGAT</canonical_amplicon>
		<polymorphic_amplicon>AGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTKTTTCAGTCAAGTCTACCATGAACTTCTTCGATCAGAGGAAGAATTCGTATCATCTCTGAGAACCTGCGTTGACGATTACATCAAAGTTCTCGATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33487</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>197429</contig_pos>
        <strand>+</strand>
        <context>CATGAACTTC[C/G]TCGATCAGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACTTC</left_flank>
        <right_flank>TCGATCAGAGGAAGAATTCGTATCATCTCTGAGAACCTGCGTTGACGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATTGGTTTCTTCCAGTTAAAGAGCTTTTGATATTACCGCATATTTCAAAACGTCTCCAAATAGTTTTCATGTAGTGCTCTTGCCCGCCCGCTCCATTAACATCAAAACGACACATTTAAAAATAATGTTATGTTGTGTTCTTCACCAGATGTTCGATGATAGATGTACAACAAACGTTTTTCGCCTACTTCTCTCTTAGCCGTCTCATTATTTCTCTCCTTTTTTCCGGCGAAACATTCGTTTGAAAGAGATAGAGAGAGGGATTTTGCTATGTAGAAAAATGAATCAACAGCCGCTTCTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACTTCTTCGATCAGAGGAAGAATTCGTATCATCTCTGAGAACCTGCGTTGACGATTACATCAAAGTTCTCGATGATCCTGGAGTACCAGAAGCAGTCAAAAAACATCGTGAAGAGCTCGCTCTGAATATTCCAGAGCTCTACAATTTTCACGCAAAGTAACAAGCAATCTAGAAAAGCATTCAAAAAAATTATACAATTTCAGTGTTATGCTAAAAGGCCTCAATTACTATTCTGACGATCCGGGCAAAGTCGGTCAGACATTTGTACGCCTTGAGAAAGATTTTGAGAGTCATGTGGAGTTTTACAAACAGTACGCAGATACTCTGAAACTTCTTGAAGAACCAGAAATAAAACGTTTCTTTGAGGTAACGATCACTGAACTTGCATTCCTCCATTTGCCGCGAATTTTTTTATTGGTTTCCTTCTTTTTTTTCTTGTTTGAATTTTTCTTTTAAATTCCCAAATTTTAAATCATTCTCAACATTTATTTGATTGTTTTCATTTC</canonical>
            <polymorphic>GGATTGGTTTCTTCCAGTTAAAGAGCTTTTGATATTACCGCATATTTCAAAACGTCTCCAAATAGTTTTCATGTAGTGCTCTTGCCCGCCCGCTCCATTAACATCAAAACGACACATTTAAAAATAATGTTATGTTGTGTTCTTCACCAGATGTTCGATGATAGATGTACAACAAACGTTTTTCGCCTACTTCTCTCTTAGCCGTCTCATTATTTCTCTCCTTTTTTCCGGCGAAACATTCGTTTGAAAGAGATAGAGAGAGGGATTTTGCTATGTAGAAAAATGAATCAACAGCCGCTTCTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACTTCSTCGATCAGAGGAAGAATTCGTATCATCTCTGAGAACCTGCGTTGACGATTACATCAAAGTTCTCGATGATCCTGGAGTACCAGAAGCAGTCAAAAAACATCGTGAAGAGCTCGCTCTGAATATTCCAGAGCTCTACAATTTTCACGCAAAGTAACAAGCAATCTAGAAAAGCATTCAAAAAAATTATACAATTTCAGTGTTATGCTAAAAGGCCTCAATTACTATTCTGACGATCCGGGCAAAGTCGGTCAGACATTTGTACGCCTTGAGAAAGATTTTGAGAGTCATGTGGAGTTTTACAAACAGTACGCAGATACTCTGAAACTTCTTGAAGAACCAGAAATAAAACGTTTCTTTGAGGTAACGATCACTGAACTTGCATTCCTCCATTTGCCGCGAATTTTTTTATTGGTTTCCTTCTTTTTTTTCTTGTTTGAATTTTTCTTTTAAATTCCCAAATTTTAAATCATTCTCAACATTTATTTGATTGTTTTCATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGAAGAGTAGGAGAAAATGAGA</pcr_primer_p1>
		<pcr_primer_p2>ATCATCGAGAACTTTGATGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACTTCTTCGATCAGAGGAAGAATTCGTATCATCTCTGAGAACCTGCGTTGACGATTACATCAAAGTTCTCGATGAT</canonical_amplicon>
		<polymorphic_amplicon>AGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACTTCSTCGATCAGAGGAAGAATTCGTATCATCTCTGAGAACCTGCGTTGACGATTACATCAAAGTTCTCGATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33488</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>197562</contig_pos>
        <strand>+</strand>
        <context>TTCCAGAGCT[C/G]TACAATTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAAGCAGTCAAAAAACATCGTGAAGAGCTCGCTCTGAATATTCCAGAGCT</left_flank>
        <right_flank>TACAATTTTCACGCAAAGTAACAAGCAATCTAGAAAAGCATTCAAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTGTGTTCTTCACCAGATGTTCGATGATAGATGTACAACAAACGTTTTTCGCCTACTTCTCTCTTAGCCGTCTCATTATTTCTCTCCTTTTTTCCGGCGAAACATTCGTTTGAAAGAGATAGAGAGAGGGATTTTGCTATGTAGAAAAATGAATCAACAGCCGCTTCTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACTTCTTCGATCAGAGGAAGAATTCGTATCATCTCTGAGAACCTGCGTTGACGATTACATCAAAGTTCTCGATGATCCTGGAGTACCAGAAGCAGTCAAAAAACATCGTGAAGAGCTCGCTCTGAATATTCCAGAGCTCTACAATTTTCACGCAAAGTAACAAGCAATCTAGAAAAGCATTCAAAAAAATTATACAATTTCAGTGTTATGCTAAAAGGCCTCAATTACTATTCTGACGATCCGGGCAAAGTCGGTCAGACATTTGTACGCCTTGAGAAAGATTTTGAGAGTCATGTGGAGTTTTACAAACAGTACGCAGATACTCTGAAACTTCTTGAAGAACCAGAAATAAAACGTTTCTTTGAGGTAACGATCACTGAACTTGCATTCCTCCATTTGCCGCGAATTTTTTTATTGGTTTCCTTCTTTTTTTTCTTGTTTGAATTTTTCTTTTAAATTCCCAAATTTTAAATCATTCTCAACATTTATTTGATTGTTTTCATTTCCGTTTCATTTTCCTAATATTATCTTCAGATTTCAAGAAAGCATCTGAACTTTTTTCCGGATTCTTAACATTTTTTAAAAAATTCATTCTTCCTGTCAACATATTGAGTTAAATTGGCTCGTCAAAAATTCAGA</canonical>
            <polymorphic>GTTGTGTTCTTCACCAGATGTTCGATGATAGATGTACAACAAACGTTTTTCGCCTACTTCTCTCTTAGCCGTCTCATTATTTCTCTCCTTTTTTCCGGCGAAACATTCGTTTGAAAGAGATAGAGAGAGGGATTTTGCTATGTAGAAAAATGAATCAACAGCCGCTTCTTTTTGGATAAAAAGATAAGAGAAGAGTAGGAGAAAATGAGATAAAATGACGGCAGTAAACATGACAAAATGGCAAGTCGAGCCAATCCTTCGGAGCACTGGCCAATAGACAAAAAGTGGAATCATTGGGAAACTATAGCAATATACATTACATATAAATTAACAAATTGTTTTTCAGTCAAGTCTACCATGAACTTCTTCGATCAGAGGAAGAATTCGTATCATCTCTGAGAACCTGCGTTGACGATTACATCAAAGTTCTCGATGATCCTGGAGTACCAGAAGCAGTCAAAAAACATCGTGAAGAGCTCGCTCTGAATATTCCAGAGCTSTACAATTTTCACGCAAAGTAACAAGCAATCTAGAAAAGCATTCAAAAAAATTATACAATTTCAGTGTTATGCTAAAAGGCCTCAATTACTATTCTGACGATCCGGGCAAAGTCGGTCAGACATTTGTACGCCTTGAGAAAGATTTTGAGAGTCATGTGGAGTTTTACAAACAGTACGCAGATACTCTGAAACTTCTTGAAGAACCAGAAATAAAACGTTTCTTTGAGGTAACGATCACTGAACTTGCATTCCTCCATTTGCCGCGAATTTTTTTATTGGTTTCCTTCTTTTTTTTCTTGTTTGAATTTTTCTTTTAAATTCCCAAATTTTAAATCATTCTCAACATTTATTTGATTGTTTTCATTTCCGTTTCATTTTCCTAATATTATCTTCAGATTTCAAGAAAGCATCTGAACTTTTTTCCGGATTCTTAACATTTTTTAAAAAATTCATTCTTCCTGTCAACATATTGAGTTAAATTGGCTCGTCAAAAATTCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 266 212 21</canonical_bands>
                <polymorphic_bands>522 266 212</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>501 478 21</canonical_bands>
                <polymorphic_bands>522 478</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 266 212 21</canonical_bands>
                <polymorphic_bands>522 266 212</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>503 476 21</canonical_bands>
                <polymorphic_bands>524 476</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGACGATTACATCAAAGTTCT</pcr_primer_p1>
		<pcr_primer_p2>CACATGACTCTCAAAATCTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTTGACGATTACATCAAAGTTCTCGATGATCCTGGAGTACCAGAAGCAGTCAAAAAACATCGTGAAGAGCTCGCTCTGAATATTCCAGAGCTCTACAATTTTCACGCAAAGTAACAAGCAATCTAGAAAAGCATTCAAAAAAATTATACAATTTCAGTGTTATGCTAAAAGGCCTCAATTACTATTCTGACGATCCGGGCAAAGTCGGTCAGACATTTGTACGCCTTGAGAAAGATTTTGAGAGTCATGTG</canonical_amplicon>
		<polymorphic_amplicon>GTTGACGATTACATCAAAGTTCTCGATGATCCTGGAGTACCAGAAGCAGTCAAAAAACATCGTGAAGAGCTCGCTCTGAATATTCCAGAGCTSTACAATTTTCACGCAAAGTAACAAGCAATCTAGAAAAGCATTCAAAAAAATTATACAATTTCAGTGTTATGCTAAAAGGCCTCAATTACTATTCTGACGATCCGGGCAAAGTCGGTCAGACATTTGTACGCCTTGAGAAAGATTTTGAGAGTCATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33489</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>207064</contig_pos>
        <strand></strand>
        <context>cctatgaaaa[G/A]cgctyastgt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GACGTCATTCTCTCCTTACAGTCTGAGAAAAACGCCAAATCCTATGAAAA</left_flank>
        <right_flank>CGCTCAGTGTTGTGACCAGTTGTTCCAAAATCAAGAGTCGTTTGCATGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCACATAAATATACGTTCACTCACCCATGAAAAATGGCGAAAACCCCAAACTTGCAGTTTCTAAAAAATATCGACCGGGGGTTCGAAAGAGTACGATATGAAAGACTTTTGGGACCCAGAGCGAATTCCGAATGAGAATGAGCAATATTTTTATTGTCATTCTTTCAATTTTTTGACTTTTGCGGTTCCACATAAAGATACGTTCACCCCCATTTTTTCCCATTTTTCAGCACCATACTCTTAAATTTTGAACTTTTCGTATTCCCTTCGTCTGTTCAAACGATGTGACGTAAAAAACTACTAACTGATTTCAAAAAAGGTCAAATTACAGCCAAAAATGCCCAAAACTTTTCAAACTGTCAGATTGCTCAGAATTTAGGAAGATCCTCAGACGTGGTCAATCGATTTGTCAAGAATTCGTTAAGTTACGGTACAAAGAACTTTTGCGGACGTCATTCTCTCCTTACAGTCTGAGAAAAACGCCAAATCCTATGAAAAGCGCTCAGTGTTGTGACCAGTTGTTCCAAAATCAAGAGTCGTTTGCATGAAGCTTCATGAAGCTTACTGTATCGAATGAGACAGTTTGACGTGTCATCCAGAAAAGCAAGTTCATCAATTATCAAAAGATGAAAGAAGCACTTATGCTGACATCAATCCATCCCCAAAAACGTCTGGAGTTTGCTCGCATTTACCTCCTCTGACATTGCATCTCTAAAATTGAAGTTTATCTTTTATACAGATTACGACAACTTTCCTAAATGTTCAGCACAGTTTCAGATTATCTTTTGTGACAAGAAAAATATCAACTGTGATGGTCCAGACGGCTACAACTCTTATTGGCATGATTTGAGAAAATATAAACTTCGCCATTTTTCATGGGTGAACGTATATTTATGTGGAGCAGTATATATCCATTCATGTTCCAGCGCTGTCTTTTGTCCAAAAACCCGATTCAATGTTTTTTTCTGCTATTAAAAAAAATATATATAAATACTAATT</canonical>
            <polymorphic>TCCACATAAATATACGTTCACTCACCCATGAAAAATGGCGAAAACCCCAAACTTGCAGTTTCTAAAAAATATCGACCGGGGGTTCGAAAGAGTACGATATGAAAGACTTTTGGGACCCAGAGCGAATTCCGAATGAGAATGAGCAATATTTTTATTGTCATTCTTTCAATTTTTTGACTTTTGCGGTTCCACATAAAGATACGTTCACCCCCATTTTTTCCCATTTTTCAGCACCATACTCTTAAATTTTGAACTTTTCGTATTCCCTTCGTCTGTTCAAACGATGTGACGTAAAAAACTACTAACTGATTTCAAAAAAGGTCAAATTACAGCCAAAAATGCCCAAAACTTTTCAAACTGTCAGATTGCTCAGAATTTAGGAAGATCCTCAGACGTGGTCAATCGATTTGTCAAGAATTCGTTAAGTTACGGTACAAAGAACTTTTGCGGACGTCATTCTCTCCTTACAGTCTGAGAAAAACGCCAAATCCTATGAAAARCGCTCAGTGTTGTGACCAGTTGTTCCAAAATCAAGAGTCGTTTGCATGAAGCTTCATGAAGCTTACTGTATCGAATGAGACAGTTTGACGTGTCATCCAGAAAAGCAAGTTCATCAATTATCAAAAGATGAAAGAAGCACTTATGCTGACATCAATCCATCCCCAAAAACGTCTGGAGTTTGCTCGCATTTACCTCCTCTGACATTGCATCTCTAAAATTGAAGTTTATCTTTTATACAGATTACGACAACTTTCCTAAATGTTCAGCACAGTTTCAGATTATCTTTTGTGACAAGAAAAATATCAACTGTGATGGTCCAGACGGCTACAACTCTTATTGGCATGATTTGAGAAAATATAAACTTCGCCATTTTTCATGGGTGAACGTATATTTATGTGGAGCAGTATATATCCATTCATGTTCCAGCGCTGTCTTTTGTCCAAAAACCCGATTCAATGTTTTTTTCTGCTATTAAAAAAAATATATATAAATACTAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCGCT</site>
                <isoschizomers>
                    <enzyme>AfeI</enzyme>
                    <enzyme>Aor51HI</enzyme>
                    <enzyme>Eco47III</enzyme>
                    <enzyme>FunI</enzyme>
                </isoschizomers>
                <canonical_bands>501 427 72</canonical_bands>
                <polymorphic_bands>928 72</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 427 71</canonical_bands>
                <polymorphic_bands>929 71</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>503 427 70</canonical_bands>
                <polymorphic_bands>930 70</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCCACATAAAGATACGTTCAC</pcr_primer_p1>
		<pcr_primer_p2>TATACGTTCACCCATGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>706</pcr_amplicon_size>
		<canonical_amplicon>GTTCCACATAAAGATACGTTCACCCCCATTTTTTCCCATTTTTCAGCACCATACTCTTAAATTTTGAACTTTTCGTATTCCCTTCGTCTGTTCAAACGATGTGACGTAAAAAACTACTAACTGATTTCAAAAAAGGTCAAATTACAGCCAAAAATGCCCAAAACTTTTCAAACTGTCAGATTGCTCAGAATTTAGGAAGATCCTCAGACGTGGTCAATCGATTTGTCAAGAATTCGTTAAGTTACGGTACAAAGAACTTTTGCGGACGTCATTCTCTCCTTACAGTCTGAGAAAAACGCCAAATCCTATGAAAAGCGCTCAGTGTTGTGACCAGTTGTTCCAAAATCAAGAGTCGTTTGCATGAAGCTTCATGAAGCTTACTGTATCGAATGAGACAGTTTGACGTGTCATCCAGAAAAGCAAGTTCATCAATTATCAAAAGATGAAAGAAGCACTTATGCTGACATCAATCCATCCCCAAAAACGTCTGGAGTTTGCTCGCATTTACCTCCTCTGACATTGCATCTCTAAAATTGAAGTTTATCTTTTATACAGATTACGACAACTTTCCTAAATGTTCAGCACAGTTTCAGATTATCTTTTGTGACAAGAAAAATATCAACTGTGATGGTCCAGACGGCTACAACTCTTATTGGCATGATTTGAGAAAATATAAACTTCGCCATTTTTCATGGGTGAACGTATA</canonical_amplicon>
		<polymorphic_amplicon>GTTCCACATAAAGATACGTTCACCCCCATTTTTTCCCATTTTTCAGCACCATACTCTTAAATTTTGAACTTTTCGTATTCCCTTCGTCTGTTCAAACGATGTGACGTAAAAAACTACTAACTGATTTCAAAAAAGGTCAAATTACAGCCAAAAATGCCCAAAACTTTTCAAACTGTCAGATTGCTCAGAATTTAGGAAGATCCTCAGACGTGGTCAATCGATTTGTCAAGAATTCGTTAAGTTACGGTACAAAGAACTTTTGCGGACGTCATTCTCTCCTTACAGTCTGAGAAAAACGCCAAATCCTATGAAAARCGCTCAGTGTTGTGACCAGTTGTTCCAAAATCAAGAGTCGTTTGCATGAAGCTTCATGAAGCTTACTGTATCGAATGAGACAGTTTGACGTGTCATCCAGAAAAGCAAGTTCATCAATTATCAAAAGATGAAAGAAGCACTTATGCTGACATCAATCCATCCCCAAAAACGTCTGGAGTTTGCTCGCATTTACCTCCTCTGACATTGCATCTCTAAAATTGAAGTTTATCTTTTATACAGATTACGACAACTTTCCTAAATGTTCAGCACAGTTTCAGATTATCTTTTGTGACAAGAAAAATATCAACTGTGATGGTCCAGACGGCTACAACTCTTATTGGCATGATTTGAGAAAATATAAACTTCGCCATTTTTCATGGGTGAACGTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33490</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>207069</contig_pos>
        <strand></strand>
        <context>gaaaarcgct[C/T]astgttgtga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATTCTCTCCTTACAGTCTGAGAAAAACGCCAAATCCTATGAAAAGCGCT</left_flank>
        <right_flank>AGTGTTGTGACCAGTTGTTCCAAAATCAAGAGTCGTTTGCATGAAGCTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAATATACGTTCACTCACCCATGAAAAATGGCGAAAACCCCAAACTTGCAGTTTCTAAAAAATATCGACCGGGGGTTCGAAAGAGTACGATATGAAAGACTTTTGGGACCCAGAGCGAATTCCGAATGAGAATGAGCAATATTTTTATTGTCATTCTTTCAATTTTTTGACTTTTGCGGTTCCACATAAAGATACGTTCACCCCCATTTTTTCCCATTTTTCAGCACCATACTCTTAAATTTTGAACTTTTCGTATTCCCTTCGTCTGTTCAAACGATGTGACGTAAAAAACTACTAACTGATTTCAAAAAAGGTCAAATTACAGCCAAAAATGCCCAAAACTTTTCAAACTGTCAGATTGCTCAGAATTTAGGAAGATCCTCAGACGTGGTCAATCGATTTGTCAAGAATTCGTTAAGTTACGGTACAAAGAACTTTTGCGGACGTCATTCTCTCCTTACAGTCTGAGAAAAACGCCAAATCCTATGAAAAGCGCTCAGTGTTGTGACCAGTTGTTCCAAAATCAAGAGTCGTTTGCATGAAGCTTCATGAAGCTTACTGTATCGAATGAGACAGTTTGACGTGTCATCCAGAAAAGCAAGTTCATCAATTATCAAAAGATGAAAGAAGCACTTATGCTGACATCAATCCATCCCCAAAAACGTCTGGAGTTTGCTCGCATTTACCTCCTCTGACATTGCATCTCTAAAATTGAAGTTTATCTTTTATACAGATTACGACAACTTTCCTAAATGTTCAGCACAGTTTCAGATTATCTTTTGTGACAAGAAAAATATCAACTGTGATGGTCCAGACGGCTACAACTCTTATTGGCATGATTTGAGAAAATATAAACTTCGCCATTTTTCATGGGTGAACGTATATTTATGTGGAGCAGTATATATCCATTCATGTTCCAGCGCTGTCTTTTGTCCAAAAACCCGATTCAATGTTTTTTTCTGCTATTAAAAAAAATATATATAAATACTAATTATATA</canonical>
            <polymorphic>ATAAATATACGTTCACTCACCCATGAAAAATGGCGAAAACCCCAAACTTGCAGTTTCTAAAAAATATCGACCGGGGGTTCGAAAGAGTACGATATGAAAGACTTTTGGGACCCAGAGCGAATTCCGAATGAGAATGAGCAATATTTTTATTGTCATTCTTTCAATTTTTTGACTTTTGCGGTTCCACATAAAGATACGTTCACCCCCATTTTTTCCCATTTTTCAGCACCATACTCTTAAATTTTGAACTTTTCGTATTCCCTTCGTCTGTTCAAACGATGTGACGTAAAAAACTACTAACTGATTTCAAAAAAGGTCAAATTACAGCCAAAAATGCCCAAAACTTTTCAAACTGTCAGATTGCTCAGAATTTAGGAAGATCCTCAGACGTGGTCAATCGATTTGTCAAGAATTCGTTAAGTTACGGTACAAAGAACTTTTGCGGACGTCATTCTCTCCTTACAGTCTGAGAAAAACGCCAAATCCTATGAAAAGCGCTYAGTGTTGTGACCAGTTGTTCCAAAATCAAGAGTCGTTTGCATGAAGCTTCATGAAGCTTACTGTATCGAATGAGACAGTTTGACGTGTCATCCAGAAAAGCAAGTTCATCAATTATCAAAAGATGAAAGAAGCACTTATGCTGACATCAATCCATCCCCAAAAACGTCTGGAGTTTGCTCGCATTTACCTCCTCTGACATTGCATCTCTAAAATTGAAGTTTATCTTTTATACAGATTACGACAACTTTCCTAAATGTTCAGCACAGTTTCAGATTATCTTTTGTGACAAGAAAAATATCAACTGTGATGGTCCAGACGGCTACAACTCTTATTGGCATGATTTGAGAAAATATAAACTTCGCCATTTTTCATGGGTGAACGTATATTTATGTGGAGCAGTATATATCCATTCATGTTCCAGCGCTGTCTTTTGTCCAAAAACCCGATTCAATGTTTTTTTCTGCTATTAAAAAAAATATATATAAATACTAATTATATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCCACATAAAGATACGTTCAC</pcr_primer_p1>
		<pcr_primer_p2>TATACGTTCACCCATGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>706</pcr_amplicon_size>
		<canonical_amplicon>GTTCCACATAAAGATACGTTCACCCCCATTTTTTCCCATTTTTCAGCACCATACTCTTAAATTTTGAACTTTTCGTATTCCCTTCGTCTGTTCAAACGATGTGACGTAAAAAACTACTAACTGATTTCAAAAAAGGTCAAATTACAGCCAAAAATGCCCAAAACTTTTCAAACTGTCAGATTGCTCAGAATTTAGGAAGATCCTCAGACGTGGTCAATCGATTTGTCAAGAATTCGTTAAGTTACGGTACAAAGAACTTTTGCGGACGTCATTCTCTCCTTACAGTCTGAGAAAAACGCCAAATCCTATGAAAAGCGCTCAGTGTTGTGACCAGTTGTTCCAAAATCAAGAGTCGTTTGCATGAAGCTTCATGAAGCTTACTGTATCGAATGAGACAGTTTGACGTGTCATCCAGAAAAGCAAGTTCATCAATTATCAAAAGATGAAAGAAGCACTTATGCTGACATCAATCCATCCCCAAAAACGTCTGGAGTTTGCTCGCATTTACCTCCTCTGACATTGCATCTCTAAAATTGAAGTTTATCTTTTATACAGATTACGACAACTTTCCTAAATGTTCAGCACAGTTTCAGATTATCTTTTGTGACAAGAAAAATATCAACTGTGATGGTCCAGACGGCTACAACTCTTATTGGCATGATTTGAGAAAATATAAACTTCGCCATTTTTCATGGGTGAACGTATA</canonical_amplicon>
		<polymorphic_amplicon>GTTCCACATAAAGATACGTTCACCCCCATTTTTTCCCATTTTTCAGCACCATACTCTTAAATTTTGAACTTTTCGTATTCCCTTCGTCTGTTCAAACGATGTGACGTAAAAAACTACTAACTGATTTCAAAAAAGGTCAAATTACAGCCAAAAATGCCCAAAACTTTTCAAACTGTCAGATTGCTCAGAATTTAGGAAGATCCTCAGACGTGGTCAATCGATTTGTCAAGAATTCGTTAAGTTACGGTACAAAGAACTTTTGCGGACGTCATTCTCTCCTTACAGTCTGAGAAAAACGCCAAATCCTATGAAAAGCGCTYAGTGTTGTGACCAGTTGTTCCAAAATCAAGAGTCGTTTGCATGAAGCTTCATGAAGCTTACTGTATCGAATGAGACAGTTTGACGTGTCATCCAGAAAAGCAAGTTCATCAATTATCAAAAGATGAAAGAAGCACTTATGCTGACATCAATCCATCCCCAAAAACGTCTGGAGTTTGCTCGCATTTACCTCCTCTGACATTGCATCTCTAAAATTGAAGTTTATCTTTTATACAGATTACGACAACTTTCCTAAATGTTCAGCACAGTTTCAGATTATCTTTTGTGACAAGAAAAATATCAACTGTGATGGTCCAGACGGCTACAACTCTTATTGGCATGATTTGAGAAAATATAAACTTCGCCATTTTTCATGGGTGAACGTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33491</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>207071</contig_pos>
        <strand></strand>
        <context>aaarcgctya[G/C]tgttgtgacc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TTCTCTCCTTACAGTCTGAGAAAAACGCCAAATCCTATGAAAAGCGCTCA</left_flank>
        <right_flank>TGTTGTGACCAGTTGTTCCAAAATCAAGAGTCGTTTGCATGAAGCTTCAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATATACGTTCACTCACCCATGAAAAATGGCGAAAACCCCAAACTTGCAGTTTCTAAAAAATATCGACCGGGGGTTCGAAAGAGTACGATATGAAAGACTTTTGGGACCCAGAGCGAATTCCGAATGAGAATGAGCAATATTTTTATTGTCATTCTTTCAATTTTTTGACTTTTGCGGTTCCACATAAAGATACGTTCACCCCCATTTTTTCCCATTTTTCAGCACCATACTCTTAAATTTTGAACTTTTCGTATTCCCTTCGTCTGTTCAAACGATGTGACGTAAAAAACTACTAACTGATTTCAAAAAAGGTCAAATTACAGCCAAAAATGCCCAAAACTTTTCAAACTGTCAGATTGCTCAGAATTTAGGAAGATCCTCAGACGTGGTCAATCGATTTGTCAAGAATTCGTTAAGTTACGGTACAAAGAACTTTTGCGGACGTCATTCTCTCCTTACAGTCTGAGAAAAACGCCAAATCCTATGAAAAGCGCTCAGTGTTGTGACCAGTTGTTCCAAAATCAAGAGTCGTTTGCATGAAGCTTCATGAAGCTTACTGTATCGAATGAGACAGTTTGACGTGTCATCCAGAAAAGCAAGTTCATCAATTATCAAAAGATGAAAGAAGCACTTATGCTGACATCAATCCATCCCCAAAAACGTCTGGAGTTTGCTCGCATTTACCTCCTCTGACATTGCATCTCTAAAATTGAAGTTTATCTTTTATACAGATTACGACAACTTTCCTAAATGTTCAGCACAGTTTCAGATTATCTTTTGTGACAAGAAAAATATCAACTGTGATGGTCCAGACGGCTACAACTCTTATTGGCATGATTTGAGAAAATATAAACTTCGCCATTTTTCATGGGTGAACGTATATTTATGTGGAGCAGTATATATCCATTCATGTTCCAGCGCTGTCTTTTGTCCAAAAACCCGATTCAATGTTTTTTTCTGCTATTAAAAAAAATATATATAAATACTAATTATATAAA</canonical>
            <polymorphic>AAATATACGTTCACTCACCCATGAAAAATGGCGAAAACCCCAAACTTGCAGTTTCTAAAAAATATCGACCGGGGGTTCGAAAGAGTACGATATGAAAGACTTTTGGGACCCAGAGCGAATTCCGAATGAGAATGAGCAATATTTTTATTGTCATTCTTTCAATTTTTTGACTTTTGCGGTTCCACATAAAGATACGTTCACCCCCATTTTTTCCCATTTTTCAGCACCATACTCTTAAATTTTGAACTTTTCGTATTCCCTTCGTCTGTTCAAACGATGTGACGTAAAAAACTACTAACTGATTTCAAAAAAGGTCAAATTACAGCCAAAAATGCCCAAAACTTTTCAAACTGTCAGATTGCTCAGAATTTAGGAAGATCCTCAGACGTGGTCAATCGATTTGTCAAGAATTCGTTAAGTTACGGTACAAAGAACTTTTGCGGACGTCATTCTCTCCTTACAGTCTGAGAAAAACGCCAAATCCTATGAAAAGCGCTCASTGTTGTGACCAGTTGTTCCAAAATCAAGAGTCGTTTGCATGAAGCTTCATGAAGCTTACTGTATCGAATGAGACAGTTTGACGTGTCATCCAGAAAAGCAAGTTCATCAATTATCAAAAGATGAAAGAAGCACTTATGCTGACATCAATCCATCCCCAAAAACGTCTGGAGTTTGCTCGCATTTACCTCCTCTGACATTGCATCTCTAAAATTGAAGTTTATCTTTTATACAGATTACGACAACTTTCCTAAATGTTCAGCACAGTTTCAGATTATCTTTTGTGACAAGAAAAATATCAACTGTGATGGTCCAGACGGCTACAACTCTTATTGGCATGATTTGAGAAAATATAAACTTCGCCATTTTTCATGGGTGAACGTATATTTATGTGGAGCAGTATATATCCATTCATGTTCCAGCGCTGTCTTTTGTCCAAAAACCCGATTCAATGTTTTTTTCTGCTATTAAAAAAAATATATATAAATACTAATTATATAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 362 84 31 19</canonical_bands>
                <polymorphic_bands>535 362 84 19</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>167 130 112 109 108 78 71 55 47 26 22 21 16 16 13 5 4</canonical_bands>
                <polymorphic_bands>167 130 117 109 108 78 71 55 47 26 22 21 16 16 13 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCCACATAAAGATACGTTCAC</pcr_primer_p1>
		<pcr_primer_p2>TATACGTTCACCCATGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>706</pcr_amplicon_size>
		<canonical_amplicon>GTTCCACATAAAGATACGTTCACCCCCATTTTTTCCCATTTTTCAGCACCATACTCTTAAATTTTGAACTTTTCGTATTCCCTTCGTCTGTTCAAACGATGTGACGTAAAAAACTACTAACTGATTTCAAAAAAGGTCAAATTACAGCCAAAAATGCCCAAAACTTTTCAAACTGTCAGATTGCTCAGAATTTAGGAAGATCCTCAGACGTGGTCAATCGATTTGTCAAGAATTCGTTAAGTTACGGTACAAAGAACTTTTGCGGACGTCATTCTCTCCTTACAGTCTGAGAAAAACGCCAAATCCTATGAAAAGCGCTCAGTGTTGTGACCAGTTGTTCCAAAATCAAGAGTCGTTTGCATGAAGCTTCATGAAGCTTACTGTATCGAATGAGACAGTTTGACGTGTCATCCAGAAAAGCAAGTTCATCAATTATCAAAAGATGAAAGAAGCACTTATGCTGACATCAATCCATCCCCAAAAACGTCTGGAGTTTGCTCGCATTTACCTCCTCTGACATTGCATCTCTAAAATTGAAGTTTATCTTTTATACAGATTACGACAACTTTCCTAAATGTTCAGCACAGTTTCAGATTATCTTTTGTGACAAGAAAAATATCAACTGTGATGGTCCAGACGGCTACAACTCTTATTGGCATGATTTGAGAAAATATAAACTTCGCCATTTTTCATGGGTGAACGTATA</canonical_amplicon>
		<polymorphic_amplicon>GTTCCACATAAAGATACGTTCACCCCCATTTTTTCCCATTTTTCAGCACCATACTCTTAAATTTTGAACTTTTCGTATTCCCTTCGTCTGTTCAAACGATGTGACGTAAAAAACTACTAACTGATTTCAAAAAAGGTCAAATTACAGCCAAAAATGCCCAAAACTTTTCAAACTGTCAGATTGCTCAGAATTTAGGAAGATCCTCAGACGTGGTCAATCGATTTGTCAAGAATTCGTTAAGTTACGGTACAAAGAACTTTTGCGGACGTCATTCTCTCCTTACAGTCTGAGAAAAACGCCAAATCCTATGAAAAGCGCTCASTGTTGTGACCAGTTGTTCCAAAATCAAGAGTCGTTTGCATGAAGCTTCATGAAGCTTACTGTATCGAATGAGACAGTTTGACGTGTCATCCAGAAAAGCAAGTTCATCAATTATCAAAAGATGAAAGAAGCACTTATGCTGACATCAATCCATCCCCAAAAACGTCTGGAGTTTGCTCGCATTTACCTCCTCTGACATTGCATCTCTAAAATTGAAGTTTATCTTTTATACAGATTACGACAACTTTCCTAAATGTTCAGCACAGTTTCAGATTATCTTTTGTGACAAGAAAAATATCAACTGTGATGGTCCAGACGGCTACAACTCTTATTGGCATGATTTGAGAAAATATAAACTTCGCCATTTTTCATGGGTGAACGTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33492</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>207095</contig_pos>
        <strand></strand>
        <context>tgttccaaaa[T/C]caagagtcgt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACGCCAAATCCTATGAAAAGCGCTCAGTGTTGTGACCAGTTGTTCCAAAA</left_flank>
        <right_flank>CAAGAGTCGTTTGCATGAAGCTTCATGAAGCTTACTGTATCGAATGAGAC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATGGCGAAAACCCCAAACTTGCAGTTTCTAAAAAATATCGACCGGGGGTTCGAAAGAGTACGATATGAAAGACTTTTGGGACCCAGAGCGAATTCCGAATGAGAATGAGCAATATTTTTATTGTCATTCTTTCAATTTTTTGACTTTTGCGGTTCCACATAAAGATACGTTCACCCCCATTTTTTCCCATTTTTCAGCACCATACTCTTAAATTTTGAACTTTTCGTATTCCCTTCGTCTGTTCAAACGATGTGACGTAAAAAACTACTAACTGATTTCAAAAAAGGTCAAATTACAGCCAAAAATGCCCAAAACTTTTCAAACTGTCAGATTGCTCAGAATTTAGGAAGATCCTCAGACGTGGTCAATCGATTTGTCAAGAATTCGTTAAGTTACGGTACAAAGAACTTTTGCGGACGTCATTCTCTCCTTACAGTCTGAGAAAAACGCCAAATCCTATGAAAAGCGCTCAGTGTTGTGACCAGTTGTTCCAAAATCAAGAGTCGTTTGCATGAAGCTTCATGAAGCTTACTGTATCGAATGAGACAGTTTGACGTGTCATCCAGAAAAGCAAGTTCATCAATTATCAAAAGATGAAAGAAGCACTTATGCTGACATCAATCCATCCCCAAAAACGTCTGGAGTTTGCTCGCATTTACCTCCTCTGACATTGCATCTCTAAAATTGAAGTTTATCTTTTATACAGATTACGACAACTTTCCTAAATGTTCAGCACAGTTTCAGATTATCTTTTGTGACAAGAAAAATATCAACTGTGATGGTCCAGACGGCTACAACTCTTATTGGCATGATTTGAGAAAATATAAACTTCGCCATTTTTCATGGGTGAACGTATATTTATGTGGAGCAGTATATATCCATTCATGTTCCAGCGCTGTCTTTTGTCCAAAAACCCGATTCAATGTTTTTTTCTGCTATTAAAAAAAATATATATAAATACTAATTATATAAAAATACTCTATAAAAATACTCTATA</canonical>
            <polymorphic>AAAATGGCGAAAACCCCAAACTTGCAGTTTCTAAAAAATATCGACCGGGGGTTCGAAAGAGTACGATATGAAAGACTTTTGGGACCCAGAGCGAATTCCGAATGAGAATGAGCAATATTTTTATTGTCATTCTTTCAATTTTTTGACTTTTGCGGTTCCACATAAAGATACGTTCACCCCCATTTTTTCCCATTTTTCAGCACCATACTCTTAAATTTTGAACTTTTCGTATTCCCTTCGTCTGTTCAAACGATGTGACGTAAAAAACTACTAACTGATTTCAAAAAAGGTCAAATTACAGCCAAAAATGCCCAAAACTTTTCAAACTGTCAGATTGCTCAGAATTTAGGAAGATCCTCAGACGTGGTCAATCGATTTGTCAAGAATTCGTTAAGTTACGGTACAAAGAACTTTTGCGGACGTCATTCTCTCCTTACAGTCTGAGAAAAACGCCAAATCCTATGAAAAGCGCTCAGTGTTGTGACCAGTTGTTCCAAAAYCAAGAGTCGTTTGCATGAAGCTTCATGAAGCTTACTGTATCGAATGAGACAGTTTGACGTGTCATCCAGAAAAGCAAGTTCATCAATTATCAAAAGATGAAAGAAGCACTTATGCTGACATCAATCCATCCCCAAAAACGTCTGGAGTTTGCTCGCATTTACCTCCTCTGACATTGCATCTCTAAAATTGAAGTTTATCTTTTATACAGATTACGACAACTTTCCTAAATGTTCAGCACAGTTTCAGATTATCTTTTGTGACAAGAAAAATATCAACTGTGATGGTCCAGACGGCTACAACTCTTATTGGCATGATTTGAGAAAATATAAACTTCGCCATTTTTCATGGGTGAACGTATATTTATGTGGAGCAGTATATATCCATTCATGTTCCAGCGCTGTCTTTTGTCCAAAAACCCGATTCAATGTTTTTTTCTGCTATTAAAAAAAATATATATAAATACTAATTATATAAAAATACTCTATAAAAATACTCTATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>381 213 145 120 76 42 23</canonical_bands>
                <polymorphic_bands>381 213 145 143 76 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCCACATAAAGATACGTTCAC</pcr_primer_p1>
		<pcr_primer_p2>TATACGTTCACCCATGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>706</pcr_amplicon_size>
		<canonical_amplicon>GTTCCACATAAAGATACGTTCACCCCCATTTTTTCCCATTTTTCAGCACCATACTCTTAAATTTTGAACTTTTCGTATTCCCTTCGTCTGTTCAAACGATGTGACGTAAAAAACTACTAACTGATTTCAAAAAAGGTCAAATTACAGCCAAAAATGCCCAAAACTTTTCAAACTGTCAGATTGCTCAGAATTTAGGAAGATCCTCAGACGTGGTCAATCGATTTGTCAAGAATTCGTTAAGTTACGGTACAAAGAACTTTTGCGGACGTCATTCTCTCCTTACAGTCTGAGAAAAACGCCAAATCCTATGAAAAGCGCTCAGTGTTGTGACCAGTTGTTCCAAAATCAAGAGTCGTTTGCATGAAGCTTCATGAAGCTTACTGTATCGAATGAGACAGTTTGACGTGTCATCCAGAAAAGCAAGTTCATCAATTATCAAAAGATGAAAGAAGCACTTATGCTGACATCAATCCATCCCCAAAAACGTCTGGAGTTTGCTCGCATTTACCTCCTCTGACATTGCATCTCTAAAATTGAAGTTTATCTTTTATACAGATTACGACAACTTTCCTAAATGTTCAGCACAGTTTCAGATTATCTTTTGTGACAAGAAAAATATCAACTGTGATGGTCCAGACGGCTACAACTCTTATTGGCATGATTTGAGAAAATATAAACTTCGCCATTTTTCATGGGTGAACGTATA</canonical_amplicon>
		<polymorphic_amplicon>GTTCCACATAAAGATACGTTCACCCCCATTTTTTCCCATTTTTCAGCACCATACTCTTAAATTTTGAACTTTTCGTATTCCCTTCGTCTGTTCAAACGATGTGACGTAAAAAACTACTAACTGATTTCAAAAAAGGTCAAATTACAGCCAAAAATGCCCAAAACTTTTCAAACTGTCAGATTGCTCAGAATTTAGGAAGATCCTCAGACGTGGTCAATCGATTTGTCAAGAATTCGTTAAGTTACGGTACAAAGAACTTTTGCGGACGTCATTCTCTCCTTACAGTCTGAGAAAAACGCCAAATCCTATGAAAAGCGCTCAGTGTTGTGACCAGTTGTTCCAAAAYCAAGAGTCGTTTGCATGAAGCTTCATGAAGCTTACTGTATCGAATGAGACAGTTTGACGTGTCATCCAGAAAAGCAAGTTCATCAATTATCAAAAGATGAAAGAAGCACTTATGCTGACATCAATCCATCCCCAAAAACGTCTGGAGTTTGCTCGCATTTACCTCCTCTGACATTGCATCTCTAAAATTGAAGTTTATCTTTTATACAGATTACGACAACTTTCCTAAATGTTCAGCACAGTTTCAGATTATCTTTTGTGACAAGAAAAATATCAACTGTGATGGTCCAGACGGCTACAACTCTTATTGGCATGATTTGAGAAAATATAAACTTCGCCATTTTTCATGGGTGAACGTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33493</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>207198</contig_pos>
        <strand></strand>
        <context>aaagatgaaa[G/A]aakcacttat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTGACGTGTCATCCAGAAAAGCAAGTTCATCAATTATCAAAAGATGAAA</left_flank>
        <right_flank>AAGCACTTATGCTGACATCAATCCATCCCCAAAAACGTCTGGAGTTTGCT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAATGAGCAATATTTTTATTGTCATTCTTTCAATTTTTTGACTTTTGCGGTTCCACATAAAGATACGTTCACCCCCATTTTTTCCCATTTTTCAGCACCATACTCTTAAATTTTGAACTTTTCGTATTCCCTTCGTCTGTTCAAACGATGTGACGTAAAAAACTACTAACTGATTTCAAAAAAGGTCAAATTACAGCCAAAAATGCCCAAAACTTTTCAAACTGTCAGATTGCTCAGAATTTAGGAAGATCCTCAGACGTGGTCAATCGATTTGTCAAGAATTCGTTAAGTTACGGTACAAAGAACTTTTGCGGACGTCATTCTCTCCTTACAGTCTGAGAAAAACGCCAAATCCTATGAAAAGCGCTCAGTGTTGTGACCAGTTGTTCCAAAATCAAGAGTCGTTTGCATGAAGCTTCATGAAGCTTACTGTATCGAATGAGACAGTTTGACGTGTCATCCAGAAAAGCAAGTTCATCAATTATCAAAAGATGAAAGAAGCACTTATGCTGACATCAATCCATCCCCAAAAACGTCTGGAGTTTGCTCGCATTTACCTCCTCTGACATTGCATCTCTAAAATTGAAGTTTATCTTTTATACAGATTACGACAACTTTCCTAAATGTTCAGCACAGTTTCAGATTATCTTTTGTGACAAGAAAAATATCAACTGTGATGGTCCAGACGGCTACAACTCTTATTGGCATGATTTGAGAAAATATAAACTTCGCCATTTTTCATGGGTGAACGTATATTTATGTGGAGCAGTATATATCCATTCATGTTCCAGCGCTGTCTTTTGTCCAAAAACCCGATTCAATGTTTTTTTCTGCTATTAAAAAAAATATATATAAATACTAATTATATAAAAATACTCTATAAAAATACTCTATAAATACTTTATAAAAATACTAATTTTTGATCTGAAAACAGTGGCACAGTACATTCAGAAACTTAACATGCTTACAATAAAATCATCCTTTGTTTACAATTTCTT</canonical>
            <polymorphic>GAGAATGAGCAATATTTTTATTGTCATTCTTTCAATTTTTTGACTTTTGCGGTTCCACATAAAGATACGTTCACCCCCATTTTTTCCCATTTTTCAGCACCATACTCTTAAATTTTGAACTTTTCGTATTCCCTTCGTCTGTTCAAACGATGTGACGTAAAAAACTACTAACTGATTTCAAAAAAGGTCAAATTACAGCCAAAAATGCCCAAAACTTTTCAAACTGTCAGATTGCTCAGAATTTAGGAAGATCCTCAGACGTGGTCAATCGATTTGTCAAGAATTCGTTAAGTTACGGTACAAAGAACTTTTGCGGACGTCATTCTCTCCTTACAGTCTGAGAAAAACGCCAAATCCTATGAAAAGCGCTCAGTGTTGTGACCAGTTGTTCCAAAATCAAGAGTCGTTTGCATGAAGCTTCATGAAGCTTACTGTATCGAATGAGACAGTTTGACGTGTCATCCAGAAAAGCAAGTTCATCAATTATCAAAAGATGAAARAAGCACTTATGCTGACATCAATCCATCCCCAAAAACGTCTGGAGTTTGCTCGCATTTACCTCCTCTGACATTGCATCTCTAAAATTGAAGTTTATCTTTTATACAGATTACGACAACTTTCCTAAATGTTCAGCACAGTTTCAGATTATCTTTTGTGACAAGAAAAATATCAACTGTGATGGTCCAGACGGCTACAACTCTTATTGGCATGATTTGAGAAAATATAAACTTCGCCATTTTTCATGGGTGAACGTATATTTATGTGGAGCAGTATATATCCATTCATGTTCCAGCGCTGTCTTTTGTCCAAAAACCCGATTCAATGTTTTTTTCTGCTATTAAAAAAAATATATATAAATACTAATTATATAAAAATACTCTATAAAAATACTCTATAAATACTTTATAAAAATACTAATTTTTGATCTGAAAACAGTGGCACAGTACATTCAGAAACTTAACATGCTTACAATAAAATCATCCTTTGTTTACAATTTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCCACATAAAGATACGTTCAC</pcr_primer_p1>
		<pcr_primer_p2>TATACGTTCACCCATGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>706</pcr_amplicon_size>
		<canonical_amplicon>GTTCCACATAAAGATACGTTCACCCCCATTTTTTCCCATTTTTCAGCACCATACTCTTAAATTTTGAACTTTTCGTATTCCCTTCGTCTGTTCAAACGATGTGACGTAAAAAACTACTAACTGATTTCAAAAAAGGTCAAATTACAGCCAAAAATGCCCAAAACTTTTCAAACTGTCAGATTGCTCAGAATTTAGGAAGATCCTCAGACGTGGTCAATCGATTTGTCAAGAATTCGTTAAGTTACGGTACAAAGAACTTTTGCGGACGTCATTCTCTCCTTACAGTCTGAGAAAAACGCCAAATCCTATGAAAAGCGCTCAGTGTTGTGACCAGTTGTTCCAAAATCAAGAGTCGTTTGCATGAAGCTTCATGAAGCTTACTGTATCGAATGAGACAGTTTGACGTGTCATCCAGAAAAGCAAGTTCATCAATTATCAAAAGATGAAAGAAGCACTTATGCTGACATCAATCCATCCCCAAAAACGTCTGGAGTTTGCTCGCATTTACCTCCTCTGACATTGCATCTCTAAAATTGAAGTTTATCTTTTATACAGATTACGACAACTTTCCTAAATGTTCAGCACAGTTTCAGATTATCTTTTGTGACAAGAAAAATATCAACTGTGATGGTCCAGACGGCTACAACTCTTATTGGCATGATTTGAGAAAATATAAACTTCGCCATTTTTCATGGGTGAACGTATA</canonical_amplicon>
		<polymorphic_amplicon>GTTCCACATAAAGATACGTTCACCCCCATTTTTTCCCATTTTTCAGCACCATACTCTTAAATTTTGAACTTTTCGTATTCCCTTCGTCTGTTCAAACGATGTGACGTAAAAAACTACTAACTGATTTCAAAAAAGGTCAAATTACAGCCAAAAATGCCCAAAACTTTTCAAACTGTCAGATTGCTCAGAATTTAGGAAGATCCTCAGACGTGGTCAATCGATTTGTCAAGAATTCGTTAAGTTACGGTACAAAGAACTTTTGCGGACGTCATTCTCTCCTTACAGTCTGAGAAAAACGCCAAATCCTATGAAAAGCGCTCAGTGTTGTGACCAGTTGTTCCAAAATCAAGAGTCGTTTGCATGAAGCTTCATGAAGCTTACTGTATCGAATGAGACAGTTTGACGTGTCATCCAGAAAAGCAAGTTCATCAATTATCAAAAGATGAAARAAGCACTTATGCTGACATCAATCCATCCCCAAAAACGTCTGGAGTTTGCTCGCATTTACCTCCTCTGACATTGCATCTCTAAAATTGAAGTTTATCTTTTATACAGATTACGACAACTTTCCTAAATGTTCAGCACAGTTTCAGATTATCTTTTGTGACAAGAAAAATATCAACTGTGATGGTCCAGACGGCTACAACTCTTATTGGCATGATTTGAGAAAATATAAACTTCGCCATTTTTCATGGGTGAACGTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33494</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>207201</contig_pos>
        <strand></strand>
        <context>gatgaaaraa[G/T]cacttatgct</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GACGTGTCATCCAGAAAAGCAAGTTCATCAATTATCAAAAGATGAAAGAA</left_flank>
        <right_flank>CACTTATGCTGACATCAATCCATCCCCAAAAACGTCTGGAGTTTGCTCGC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGAGCAATATTTTTATTGTCATTCTTTCAATTTTTTGACTTTTGCGGTTCCACATAAAGATACGTTCACCCCCATTTTTTCCCATTTTTCAGCACCATACTCTTAAATTTTGAACTTTTCGTATTCCCTTCGTCTGTTCAAACGATGTGACGTAAAAAACTACTAACTGATTTCAAAAAAGGTCAAATTACAGCCAAAAATGCCCAAAACTTTTCAAACTGTCAGATTGCTCAGAATTTAGGAAGATCCTCAGACGTGGTCAATCGATTTGTCAAGAATTCGTTAAGTTACGGTACAAAGAACTTTTGCGGACGTCATTCTCTCCTTACAGTCTGAGAAAAACGCCAAATCCTATGAAAAGCGCTCAGTGTTGTGACCAGTTGTTCCAAAATCAAGAGTCGTTTGCATGAAGCTTCATGAAGCTTACTGTATCGAATGAGACAGTTTGACGTGTCATCCAGAAAAGCAAGTTCATCAATTATCAAAAGATGAAAGAAGCACTTATGCTGACATCAATCCATCCCCAAAAACGTCTGGAGTTTGCTCGCATTTACCTCCTCTGACATTGCATCTCTAAAATTGAAGTTTATCTTTTATACAGATTACGACAACTTTCCTAAATGTTCAGCACAGTTTCAGATTATCTTTTGTGACAAGAAAAATATCAACTGTGATGGTCCAGACGGCTACAACTCTTATTGGCATGATTTGAGAAAATATAAACTTCGCCATTTTTCATGGGTGAACGTATATTTATGTGGAGCAGTATATATCCATTCATGTTCCAGCGCTGTCTTTTGTCCAAAAACCCGATTCAATGTTTTTTTCTGCTATTAAAAAAAATATATATAAATACTAATTATATAAAAATACTCTATAAAAATACTCTATAAATACTTTATAAAAATACTAATTTTTGATCTGAAAACAGTGGCACAGTACATTCAGAAACTTAACATGCTTACAATAAAATCATCCTTTGTTTACAATTTCTTTGT</canonical>
            <polymorphic>AATGAGCAATATTTTTATTGTCATTCTTTCAATTTTTTGACTTTTGCGGTTCCACATAAAGATACGTTCACCCCCATTTTTTCCCATTTTTCAGCACCATACTCTTAAATTTTGAACTTTTCGTATTCCCTTCGTCTGTTCAAACGATGTGACGTAAAAAACTACTAACTGATTTCAAAAAAGGTCAAATTACAGCCAAAAATGCCCAAAACTTTTCAAACTGTCAGATTGCTCAGAATTTAGGAAGATCCTCAGACGTGGTCAATCGATTTGTCAAGAATTCGTTAAGTTACGGTACAAAGAACTTTTGCGGACGTCATTCTCTCCTTACAGTCTGAGAAAAACGCCAAATCCTATGAAAAGCGCTCAGTGTTGTGACCAGTTGTTCCAAAATCAAGAGTCGTTTGCATGAAGCTTCATGAAGCTTACTGTATCGAATGAGACAGTTTGACGTGTCATCCAGAAAAGCAAGTTCATCAATTATCAAAAGATGAAAGAAKCACTTATGCTGACATCAATCCATCCCCAAAAACGTCTGGAGTTTGCTCGCATTTACCTCCTCTGACATTGCATCTCTAAAATTGAAGTTTATCTTTTATACAGATTACGACAACTTTCCTAAATGTTCAGCACAGTTTCAGATTATCTTTTGTGACAAGAAAAATATCAACTGTGATGGTCCAGACGGCTACAACTCTTATTGGCATGATTTGAGAAAATATAAACTTCGCCATTTTTCATGGGTGAACGTATATTTATGTGGAGCAGTATATATCCATTCATGTTCCAGCGCTGTCTTTTGTCCAAAAACCCGATTCAATGTTTTTTTCTGCTATTAAAAAAAATATATATAAATACTAATTATATAAAAATACTCTATAAAAATACTCTATAAATACTTTATAAAAATACTAATTTTTGATCTGAAAACAGTGGCACAGTACATTCAGAAACTTAACATGCTTACAATAAAATCATCCTTTGTTTACAATTTCTTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCCACATAAAGATACGTTCAC</pcr_primer_p1>
		<pcr_primer_p2>TATACGTTCACCCATGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>706</pcr_amplicon_size>
		<canonical_amplicon>GTTCCACATAAAGATACGTTCACCCCCATTTTTTCCCATTTTTCAGCACCATACTCTTAAATTTTGAACTTTTCGTATTCCCTTCGTCTGTTCAAACGATGTGACGTAAAAAACTACTAACTGATTTCAAAAAAGGTCAAATTACAGCCAAAAATGCCCAAAACTTTTCAAACTGTCAGATTGCTCAGAATTTAGGAAGATCCTCAGACGTGGTCAATCGATTTGTCAAGAATTCGTTAAGTTACGGTACAAAGAACTTTTGCGGACGTCATTCTCTCCTTACAGTCTGAGAAAAACGCCAAATCCTATGAAAAGCGCTCAGTGTTGTGACCAGTTGTTCCAAAATCAAGAGTCGTTTGCATGAAGCTTCATGAAGCTTACTGTATCGAATGAGACAGTTTGACGTGTCATCCAGAAAAGCAAGTTCATCAATTATCAAAAGATGAAAGAAGCACTTATGCTGACATCAATCCATCCCCAAAAACGTCTGGAGTTTGCTCGCATTTACCTCCTCTGACATTGCATCTCTAAAATTGAAGTTTATCTTTTATACAGATTACGACAACTTTCCTAAATGTTCAGCACAGTTTCAGATTATCTTTTGTGACAAGAAAAATATCAACTGTGATGGTCCAGACGGCTACAACTCTTATTGGCATGATTTGAGAAAATATAAACTTCGCCATTTTTCATGGGTGAACGTATA</canonical_amplicon>
		<polymorphic_amplicon>GTTCCACATAAAGATACGTTCACCCCCATTTTTTCCCATTTTTCAGCACCATACTCTTAAATTTTGAACTTTTCGTATTCCCTTCGTCTGTTCAAACGATGTGACGTAAAAAACTACTAACTGATTTCAAAAAAGGTCAAATTACAGCCAAAAATGCCCAAAACTTTTCAAACTGTCAGATTGCTCAGAATTTAGGAAGATCCTCAGACGTGGTCAATCGATTTGTCAAGAATTCGTTAAGTTACGGTACAAAGAACTTTTGCGGACGTCATTCTCTCCTTACAGTCTGAGAAAAACGCCAAATCCTATGAAAAGCGCTCAGTGTTGTGACCAGTTGTTCCAAAATCAAGAGTCGTTTGCATGAAGCTTCATGAAGCTTACTGTATCGAATGAGACAGTTTGACGTGTCATCCAGAAAAGCAAGTTCATCAATTATCAAAAGATGAAAGAAKCACTTATGCTGACATCAATCCATCCCCAAAAACGTCTGGAGTTTGCTCGCATTTACCTCCTCTGACATTGCATCTCTAAAATTGAAGTTTATCTTTTATACAGATTACGACAACTTTCCTAAATGTTCAGCACAGTTTCAGATTATCTTTTGTGACAAGAAAAATATCAACTGTGATGGTCCAGACGGCTACAACTCTTATTGGCATGATTTGAGAAAATATAAACTTCGCCATTTTTCATGGGTGAACGTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33495</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>207278</contig_pos>
        <strand></strand>
        <context>attgcatctc[T/C]aaaattgaag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAAAAACGTCTGGAGTTTGCTCGCATTTACCTCCTCTGACATTGCATCTC</left_flank>
        <right_flank>AAAATTGAAGTTTATCTTTTATACAGATTACGACAACTTTCCTAAATGTT</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCCCATTTTTCAGCACCATACTCTTAAATTTTGAACTTTTCGTATTCCCTTCGTCTGTTCAAACGATGTGACGTAAAAAACTACTAACTGATTTCAAAAAAGGTCAAATTACAGCCAAAAATGCCCAAAACTTTTCAAACTGTCAGATTGCTCAGAATTTAGGAAGATCCTCAGACGTGGTCAATCGATTTGTCAAGAATTCGTTAAGTTACGGTACAAAGAACTTTTGCGGACGTCATTCTCTCCTTACAGTCTGAGAAAAACGCCAAATCCTATGAAAAGCGCTCAGTGTTGTGACCAGTTGTTCCAAAATCAAGAGTCGTTTGCATGAAGCTTCATGAAGCTTACTGTATCGAATGAGACAGTTTGACGTGTCATCCAGAAAAGCAAGTTCATCAATTATCAAAAGATGAAAGAAGCACTTATGCTGACATCAATCCATCCCCAAAAACGTCTGGAGTTTGCTCGCATTTACCTCCTCTGACATTGCATCTCTAAAATTGAAGTTTATCTTTTATACAGATTACGACAACTTTCCTAAATGTTCAGCACAGTTTCAGATTATCTTTTGTGACAAGAAAAATATCAACTGTGATGGTCCAGACGGCTACAACTCTTATTGGCATGATTTGAGAAAATATAAACTTCGCCATTTTTCATGGGTGAACGTATATTTATGTGGAGCAGTATATATCCATTCATGTTCCAGCGCTGTCTTTTGTCCAAAAACCCGATTCAATGTTTTTTTCTGCTATTAAAAAAAATATATATAAATACTAATTATATAAAAATACTCTATAAAAATACTCTATAAATACTTTATAAAAATACTAATTTTTGATCTGAAAACAGTGGCACAGTACATTCAGAAACTTAACATGCTTACAATAAAATCATCCTTTGTTTACAATTTCTTTGTTCCAACTGATCCATCTACCGTAACATGATTGCTACCATAAAACTCTTTGCTTTTTTAGTTTCAATATCTTAGGTTCT</canonical>
            <polymorphic>TTTTTCCCATTTTTCAGCACCATACTCTTAAATTTTGAACTTTTCGTATTCCCTTCGTCTGTTCAAACGATGTGACGTAAAAAACTACTAACTGATTTCAAAAAAGGTCAAATTACAGCCAAAAATGCCCAAAACTTTTCAAACTGTCAGATTGCTCAGAATTTAGGAAGATCCTCAGACGTGGTCAATCGATTTGTCAAGAATTCGTTAAGTTACGGTACAAAGAACTTTTGCGGACGTCATTCTCTCCTTACAGTCTGAGAAAAACGCCAAATCCTATGAAAAGCGCTCAGTGTTGTGACCAGTTGTTCCAAAATCAAGAGTCGTTTGCATGAAGCTTCATGAAGCTTACTGTATCGAATGAGACAGTTTGACGTGTCATCCAGAAAAGCAAGTTCATCAATTATCAAAAGATGAAAGAAGCACTTATGCTGACATCAATCCATCCCCAAAAACGTCTGGAGTTTGCTCGCATTTACCTCCTCTGACATTGCATCTCYAAAATTGAAGTTTATCTTTTATACAGATTACGACAACTTTCCTAAATGTTCAGCACAGTTTCAGATTATCTTTTGTGACAAGAAAAATATCAACTGTGATGGTCCAGACGGCTACAACTCTTATTGGCATGATTTGAGAAAATATAAACTTCGCCATTTTTCATGGGTGAACGTATATTTATGTGGAGCAGTATATATCCATTCATGTTCCAGCGCTGTCTTTTGTCCAAAAACCCGATTCAATGTTTTTTTCTGCTATTAAAAAAAATATATATAAATACTAATTATATAAAAATACTCTATAAAAATACTCTATAAATACTTTATAAAAATACTAATTTTTGATCTGAAAACAGTGGCACAGTACATTCAGAAACTTAACATGCTTACAATAAAATCATCCTTTGTTTACAATTTCTTTGTTCCAACTGATCCATCTACCGTAACATGATTGCTACCATAAAACTCTTTGCTTTTTTAGTTTCAATATCTTAGGTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCCACATAAAGATACGTTCAC</pcr_primer_p1>
		<pcr_primer_p2>TATACGTTCACCCATGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>706</pcr_amplicon_size>
		<canonical_amplicon>CTAAAATTGAAGTTTATCTTTTATACAGATTACGACAACTTTCCTAAATGTTCAGCACAGTTTCAGATTATCTTTTGTGACAAGAAAAATATCAACTGTGATGGTCCAGACGGCTACAACTCTTATTGGCATGATTTGAGAAAATATAAACTTCGCCATTTTTCATGGGTGAACGTATA</canonical_amplicon>
		<polymorphic_amplicon>CYAAAATTGAAGTTTATCTTTTATACAGATTACGACAACTTTCCTAAATGTTCAGCACAGTTTCAGATTATCTTTTGTGACAAGAAAAATATCAACTGTGATGGTCCAGACGGCTACAACTCTTATTGGCATGATTTGAGAAAATATAAACTTCGCCATTTTTCATGGGTGAACGTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33496</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>285524</contig_pos>
        <strand></strand>
        <context>catgcatctg[G/T]cgggggaaag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGGACTATTGGCGGCTGAACGGCAGATGAGTAGAAGCGGGCATGCATCTG</left_flank>
        <right_flank>CGGGGGAAAGTCGGCATACGTTGGAAAAATAATGCGAATTATCAATGTAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGCGAAAATGGGCGAGTTGCGATACCACGGAAGGGCCACCTAAGATCGGCGAGCCACTCAATCGTGGAGGAAAATATGCCTTTTTCAGATTATTGTCAGAAATTCGGCTCCCCGTCACTTCGAAACCGGTCATTTCGAAACCGTGGTAATGCAGGCGAATGGACAAATTTCAGACTACAGAAACAACTTTAGGGTTTTCAAATATGCGTTTTCTGATAGAACACATAATGAAAATCGAAAAAAAAATCCAAAATTGATGTTCTCAAAAATCGAAATATTCTTAAATTTTTCGATTTTCAGACTGTGTTCTATCAGAACAAGCATATTTGAAAACCCTGAAGTTGTTTTTGTAGTCTGAAATTAATCCGTTCGCCTGTATTACTACGGTTTTGAACCGGTTTTGAAGTGACTGGTTTCGAAGTGACGCGGAGCTATCTCTAATCATGAACGGACTATTGGCGGCTGAACGGCAGATGAGTAGAAGCGGGCATGCATCTGGCGGGGGAAAGTCGGCATACGTTGGAAAAATAATGCGAATTATCAATGTAATAAAATATCTGAAAACTTTTCAGAGATTAGAAAATGTTTCGAACGTTAGGATGACGTATCAGAAGAGGACGGAAACAGCTTCTATGGCTACCGAAGTGCCGCACCCTCGACAACTGTTTTGTTGTCAGACTCGCCTCGTCCCCTAATGGGACTCTTCACCTGAGTTAATAAAAATATTTGTCTAATTAAAAAATAAAAACTTCTATTGCATTATAATTCATTTGAACTTTATCTCAGAGTTCATTTTCCTATATGGCTGGAATGGGATAGTTTAGGGGCCCTTCTATTACAGGTCATGCGGTAATTGTTCTGAAATTGTGAAAAATGGTGTTTCGCTTCGAAAGTCCAATTTTTGATTTTGACGTTTTCCCAGTGTTTGTCCGATGTTCGAAAAATTCTTAAAGCTTAATGAAAGACAGACTTTCAAGTTAGAACCATTTCACAGTTTAG</canonical>
            <polymorphic>TGGCGAAAATGGGCGAGTTGCGATACCACGGAAGGGCCACCTAAGATCGGCGAGCCACTCAATCGTGGAGGAAAATATGCCTTTTTCAGATTATTGTCAGAAATTCGGCTCCCCGTCACTTCGAAACCGGTCATTTCGAAACCGTGGTAATGCAGGCGAATGGACAAATTTCAGACTACAGAAACAACTTTAGGGTTTTCAAATATGCGTTTTCTGATAGAACACATAATGAAAATCGAAAAAAAAATCCAAAATTGATGTTCTCAAAAATCGAAATATTCTTAAATTTTTCGATTTTCAGACTGTGTTCTATCAGAACAAGCATATTTGAAAACCCTGAAGTTGTTTTTGTAGTCTGAAATTAATCCGTTCGCCTGTATTACTACGGTTTTGAACCGGTTTTGAAGTGACTGGTTTCGAAGTGACGCGGAGCTATCTCTAATCATGAACGGACTATTGGCGGCTGAACGGCAGATGAGTAGAAGCGGGCATGCATCTGKCGGGGGAAAGTCGGCATACGTTGGAAAAATAATGCGAATTATCAATGTAATAAAATATCTGAAAACTTTTCAGAGATTAGAAAATGTTTCGAACGTTAGGATGACGTATCAGAAGAGGACGGAAACAGCTTCTATGGCTACCGAAGTGCCGCACCCTCGACAACTGTTTTGTTGTCAGACTCGCCTCGTCCCCTAATGGGACTCTTCACCTGAGTTAATAAAAATATTTGTCTAATTAAAAAATAAAAACTTCTATTGCATTATAATTCATTTGAACTTTATCTCAGAGTTCATTTTCCTATATGGCTGGAATGGGATAGTTTAGGGGCCCTTCTATTACAGGTCATGCGGTAATTGTTCTGAAATTGTGAAAAATGGTGTTTCGCTTCGAAAGTCCAATTTTTGATTTTGACGTTTTCCCAGTGTTTGTCCGATGTTCGAAAAATTCTTAAAGCTTAATGAAAGACAGACTTTCAAGTTAGAACCATTTCACAGTTTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>459 351 150 40</canonical_bands>
                <polymorphic_bands>459 351 190</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTAATCCGTTCGCCTGTAT</pcr_primer_p1>
		<pcr_primer_p2>TTCTGATACGTCATCCTAACG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ATTAATCCGTTCGCCTGTATTACTACGGTTTTGAACCGGTTTTGAAGTGACTGGTTTCGAAGTGACGCGGAGCTATCTCTAATCATGAACGGACTATTGGCGGCTGAACGGCAGATGAGTAGAAGCGGGCATGCATCTGGCGGGGGAAAGTCGGCATACGTTGGAAAAATAATGCGAATTATCAATGTAATAAAATATCTGAAAACTTTTCAGAGATTAGAAAATGTTTCGAACGTTAGGATGACGTATCAGAA</canonical_amplicon>
		<polymorphic_amplicon>ATTAATCCGTTCGCCTGTATTACTACGGTTTTGAACCGGTTTTGAAGTGACTGGTTTCGAAGTGACGCGGAGCTATCTCTAATCATGAACGGACTATTGGCGGCTGAACGGCAGATGAGTAGAAGCGGGCATGCATCTGKCGGGGGAAAGTCGGCATACGTTGGAAAAATAATGCGAATTATCAATGTAATAAAATATCTGAAAACTTTTCAGAGATTAGAAAATGTTTCGAACGTTAGGATGACGTATCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33497</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>287630</contig_pos>
        <strand>+</strand>
        <context>TACCACTTTT[C/G]TAGAACAATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATCATCAAAAACCATCAGAAATTGGACTTTCGAAGCAAAATACCACTTTT</left_flank>
        <right_flank>TAGAACAATCACCGCATGACCTGTAATATAACGGTCCTCAATCTGTCTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCGCCTGCATCGGAGGAGGAGGTGGTGGCCAATGCTGCCCACCAGCTCAGCCAGGATGCTCCAACCCATGGTATTTTCGATTTCTATGTATTGAGAAATAACATTTCGCGATTTTCAGTCAAGGAGCCGGACCACAATACGCCGCTGCTCCACCTCCACCACCACAGTATGCTGCTCCACCACCGGCTGCCGGAGGATACCCAACCGCTGGAAAGTAATCTATCAATTCAAAAAATTTATCTTGGTTGTATATTTGAAACATATCTACTCTGCAATAGAGTTCAAATAAATTATTCTGCATTCAATATGGTGTTCAGGAGTACGAAAACCTTCAAAAGAAAATAATTTTAAAGTGAGTACAACCAAGGGAAATCCTGAAGTGTGGAACCGTTCTAACTTGGAAGTCAGTCTTGCATTAAACGTTTAGGATGTTTCAAATATCAGACAATCATCAAAAACCATCAGAAATTGGACTTTCGAAGCAAAATACCACTTTTCTAGAACAATCACCGCATGACCTGTAATATAACGGTCCTCAATCTGTCTCTGTTCTTGTGAAAAATAAAATGCGTTCATTATACATAATATCACGAATATTTTGCGGTATTAACGTTTTTAAATGCTCTTATGGACCTCAGACTCAGCTGAATTTTCTTCAATTATGGGATTTTTCCACTCGGTTTTACAGGGGAATTGTGACAGCTGTTTGCAAAGTTATCAGATTCTGGGATTTCTACCAGATGAACGGCAGTTCAACTAAAGTACACAACATTTTCAGAATACAATTTATAAATTATTCCAGTTATGAAAGTTTTGGAAAACTAAAACCCAGGTAACTACAATTGTTTCAACAACAAAAACCGTCCCACTTGATCAGTTTAAAGAATACAAGATTATTTAATTGAATAAGAAAAACCCTATCAAAATAAGGCGAAAAATTTATTTAAATTGAAAATTAAATAAAATATCCTAAATATACAGAAAAATGAACATTCCAA</canonical>
            <polymorphic>ATCCGCCTGCATCGGAGGAGGAGGTGGTGGCCAATGCTGCCCACCAGCTCAGCCAGGATGCTCCAACCCATGGTATTTTCGATTTCTATGTATTGAGAAATAACATTTCGCGATTTTCAGTCAAGGAGCCGGACCACAATACGCCGCTGCTCCACCTCCACCACCACAGTATGCTGCTCCACCACCGGCTGCCGGAGGATACCCAACCGCTGGAAAGTAATCTATCAATTCAAAAAATTTATCTTGGTTGTATATTTGAAACATATCTACTCTGCAATAGAGTTCAAATAAATTATTCTGCATTCAATATGGTGTTCAGGAGTACGAAAACCTTCAAAAGAAAATAATTTTAAAGTGAGTACAACCAAGGGAAATCCTGAAGTGTGGAACCGTTCTAACTTGGAAGTCAGTCTTGCATTAAACGTTTAGGATGTTTCAAATATCAGACAATCATCAAAAACCATCAGAAATTGGACTTTCGAAGCAAAATACCACTTTTSTAGAACAATCACCGCATGACCTGTAATATAACGGTCCTCAATCTGTCTCTGTTCTTGTGAAAAATAAAATGCGTTCATTATACATAATATCACGAATATTTTGCGGTATTAACGTTTTTAAATGCTCTTATGGACCTCAGACTCAGCTGAATTTTCTTCAATTATGGGATTTTTCCACTCGGTTTTACAGGGGAATTGTGACAGCTGTTTGCAAAGTTATCAGATTCTGGGATTTCTACCAGATGAACGGCAGTTCAACTAAAGTACACAACATTTTCAGAATACAATTTATAAATTATTCCAGTTATGAAAGTTTTGGAAAACTAAAACCCAGGTAACTACAATTGTTTCAACAACAAAAACCGTCCCACTTGATCAGTTTAAAGAATACAAGATTATTTAATTGAATAAGAAAAACCCTATCAAAATAAGGCGAAAAATTTATTTAAATTGAAAATTAAATAAAATATCCTAAATATACAGAAAAATGAACATTCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>409 208 124 109 91 59</canonical_bands>
                <polymorphic_bands>409 215 208 109 59</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTACGAAAACCTTCAAAAGA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCACAAGAACAGAGACAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAGTACGAAAACCTTCAAAAGAAAATAATTTTAAAGTGAGTACAACCAAGGGAAATCCTGAAGTGTGGAACCGTTCTAACTTGGAAGTCAGTCTTGCATTAAACGTTTAGGATGTTTCAAATATCAGACAATCATCAAAAACCATCAGAAATTGGACTTTCGAAGCAAAATACCACTTTTCTAGAACAATCACCGCATGACCTGTAATATAACGGTCCTCAATCTGTCTCTGTTCTTGTGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>GAGTACGAAAACCTTCAAAAGAAAATAATTTTAAAGTGAGTACAACCAAGGGAAATCCTGAAGTGTGGAACCGTTCTAACTTGGAAGTCAGTCTTGCATTAAACGTTTAGGATGTTTCAAATATCAGACAATCATCAAAAACCATCAGAAATTGGACTTTCGAAGCAAAATACCACTTTTSTAGAACAATCACCGCATGACCTGTAATATAACGGTCCTCAATCTGTCTCTGTTCTTGTGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33498</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>297638</contig_pos>
        <strand></strand>
        <context>agcgatctct[C/G]aagtctgggt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TATAACTTTATGCTTGATTCAAATCTACTGGAATTTTTAAAGCGATCTCT</left_flank>
        <right_flank>AAGTCTGGGTATTGTTATGCTTGTCTAAAGATGGACGGCGTAATGTTTCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCAATTTGATCCTGCCGACCCTTCACATCAGTTTTGTTCAATTTACAAGCTGCTGCTACTACTGCCTTTACTTGAAGACCTGACCACCAGTTGACAGTACTCCAGTACAAATACGGAAGGTAGAAAAGAAACGCGAGGAATACGAGAATGAATTGAACCCATTGGTAATAAGTGAGCTCTCGTTCTTCTCGATAATGTTCTGGTGGCATGTTTGGATCTTCCAGTGGTACGTAGTATGTGTTTTCAATCAGACAATAATCTCTTGTGTACTCGACCCATCCTTTTTTGAACTCTGCTGGTGTCCAACAAGAGATTGCTGTTCCGAAATAAGTCTGAAAAATTGCTTTTCCGAAATAAGTCAATACAGGGTGACGCACAATTACCCGGACTGATAAAAATGGGTATATCTCGAGACAAGTATCTAGGAAGCACGAAAATTGGTAGAAATATAACTTTATGCTTGATTCAAATCTACTGGAATTTTTAAAGCGATCTCTCAAGTCTGGGTATTGTTATGCTTGTCTAAAGATGGACGGCGTAATGTTTCTGGCACAATTTTCAATAGATGAAGCAACGTTGACATGCGATAACTCAGCTCAAAATTGATCAATAAATTTGAAACTTGGCCAGTTTACTGGTCAATTATGTGAATTTTTGCACTCTAAATTTCCAACCAGTACAACGCTCTGGTCAAATTTTATGGTAGAACGAACTTGAGTATCGGTAATTATGCGTTTTTGAATTGTAGCGAAAAAAAGCAAAGTTGAAACTCACATTATATCCGATGACTAGTGCTGAAAGTGCGAATACATAAGAAGTATACTGAAAATTGAGCCGATCAATAAAATCATCTTCGTGCCTTTTGTCGGTATACTGCGTCACTAATCCTATGATTTGATCCATCACTAAAAAAAAACAAAATCTCAAATCAGAGTATGGACAGGAATTGGAGGAATGAAAATTGAGCACTACGGCAACCAACATTATTACAAGGTCGT</canonical>
            <polymorphic>TCTCAATTTGATCCTGCCGACCCTTCACATCAGTTTTGTTCAATTTACAAGCTGCTGCTACTACTGCCTTTACTTGAAGACCTGACCACCAGTTGACAGTACTCCAGTACAAATACGGAAGGTAGAAAAGAAACGCGAGGAATACGAGAATGAATTGAACCCATTGGTAATAAGTGAGCTCTCGTTCTTCTCGATAATGTTCTGGTGGCATGTTTGGATCTTCCAGTGGTACGTAGTATGTGTTTTCAATCAGACAATAATCTCTTGTGTACTCGACCCATCCTTTTTTGAACTCTGCTGGTGTCCAACAAGAGATTGCTGTTCCGAAATAAGTCTGAAAAATTGCTTTTCCGAAATAAGTCAATACAGGGTGACGCACAATTACCCGGACTGATAAAAATGGGTATATCTCGAGACAAGTATCTAGGAAGCACGAAAATTGGTAGAAATATAACTTTATGCTTGATTCAAATCTACTGGAATTTTTAAAGCGATCTCTSAAGTCTGGGTATTGTTATGCTTGTCTAAAGATGGACGGCGTAATGTTTCTGGCACAATTTTCAATAGATGAAGCAACGTTGACATGCGATAACTCAGCTCAAAATTGATCAATAAATTTGAAACTTGGCCAGTTTACTGGTCAATTATGTGAATTTTTGCACTCTAAATTTCCAACCAGTACAACGCTCTGGTCAAATTTTATGGTAGAACGAACTTGAGTATCGGTAATTATGCGTTTTTGAATTGTAGCGAAAAAAAGCAAAGTTGAAACTCACATTATATCCGATGACTAGTGCTGAAAGTGCGAATACATAAGAAGTATACTGAAAATTGAGCCGATCAATAAAATCATCTTCGTGCCTTTTGTCGGTATACTGCGTCACTAATCCTATGATTTGATCCATCACTAAAAAAAAACAAAATCTCAAATCAGAGTATGGACAGGAATTGGAGGAATGAAAATTGAGCACTACGGCAACCAACATTATTACAAGGTCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>410 285 217 88</canonical_bands>
                <polymorphic_bands>410 305 285</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTTCCGAAATAAGTCAATACA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCGCTACAATTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>412</pcr_amplicon_size>
		<canonical_amplicon>CTTTTCCGAAATAAGTCAATACAGGGTGACGCACAATTACCCGGACTGATAAAAATGGGTATATCTCGAGACAAGTATCTAGGAAGCACGAAAATTGGTAGAAATATAACTTTATGCTTGATTCAAATCTACTGGAATTTTTAAAGCGATCTCTCAAGTCTGGGTATTGTTATGCTTGTCTAAAGATGGACGGCGTAATGTTTCTGGCACAATTTTCAATAGATGAAGCAACGTTGACATGCGATAACTCAGCTCAAAATTGATCAATAAATTTGAAACTTGGCCAGTTTACTGGTCAATTATGTGAATTTTTGCACTCTAAATTTCCAACCAGTACAACGCTCTGGTCAAATTTTATGGTAGAACGAACTTGAGTATCGGTAATTATGCGTTTTTGAATTGTAGCGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CTTTTCCGAAATAAGTCAATACAGGGTGACGCACAATTACCCGGACTGATAAAAATGGGTATATCTCGAGACAAGTATCTAGGAAGCACGAAAATTGGTAGAAATATAACTTTATGCTTGATTCAAATCTACTGGAATTTTTAAAGCGATCTCTSAAGTCTGGGTATTGTTATGCTTGTCTAAAGATGGACGGCGTAATGTTTCTGGCACAATTTTCAATAGATGAAGCAACGTTGACATGCGATAACTCAGCTCAAAATTGATCAATAAATTTGAAACTTGGCCAGTTTACTGGTCAATTATGTGAATTTTTGCACTCTAAATTTCCAACCAGTACAACGCTCTGGTCAAATTTTATGGTAGAACGAACTTGAGTATCGGTAATTATGCGTTTTTGAATTGTAGCGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33499</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>336423</contig_pos>
        <strand></strand>
        <context>gagaaaatcg[G/C]ggcgaagtct</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CTAGTTCTATATCTTATCTGATAATTTCGGAACCGATTCCGAGAAAATCG</left_flank>
        <right_flank>GGCGAAGTCTATTGTGCAACTGCGGCAGTTAACAAGGGAGCCATGTTTAG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTATTGTATACGTGTCTTCGAATGTATCAGAATGCAATTCTTAACCGTTTTATAATTGCTTATGATTCTTTTCTCTTTCATGATCTGATTTTGTTCACCATATAGTTCGTTCCAACTCCTGTTTCGAGTATATGTTCCATTTGTTCTAATATTTGTATTCTTGCTGTTCCATGATCCGTTTCCATTTCCGATGTTTAGGTTTCGAAAAGAAAAATTATTTTCAGTTACCCCGATATTATCCTTGTCTGAGAAAAAAAAGGTAGAGACGCAGAGAAAAAGTGTCTGTGTCTCCACCTTATGTGTGCTATTTAGGCTCTCCGCTTCGATATCGCTACCGTATTCAGACTGCAAAAAATACTCTCTAACCTTTTTTTTCTCAGACAAGCAAAATAAAGTTCTAATTTTATTTTATATATGCTCTCATCCCGTTTTTCTTTGCGTTCTTTCGCTAGTTCTATATCTTATCTGATAATTTCGGAACCGATTCCGAGAAAATCGGGGCGAAGTCTATTGTGCAACTGCGGCAGTTAACAAGGGAGCCATGTTTAGCCTTCATCTCACAATTTTTTCTAAATTTGCTCATTTATAGATTCAAACAAGGGCTTTCTTGTGGTGTATTTGGTTTTCTGCACAATTTTCTAGAAATCGAGTTATGGGCTGTTTAAGTGATTTCAGTACTAATTTCTCATTATTGGAGTGAGTTTTTGAAAGGTTTAATGAGCGTTTTTCGGCACTTTTTGAGTGTGAATCGTAATTTTAAAAGTTTCTCTACAATCCGACAAAGTTTCCTTATTTTTCAAAAAAAAATTTTTTTTTGATAAAATTTTGCCATGGGTAACCCCCTTTTGCGAAAATTTCAATTTTTCGAAAAAATTTTAAATGTGCTAAAATGAATTCTAAACGCATAAAAATAATAAAATCAGTCTTTTCACAAGATTCTGTAGACTATATCCGTTTTGAAATCCCAAATAAGTGATTTCTTCCGAAACTTCCATAAAT</canonical>
            <polymorphic>CGTATTGTATACGTGTCTTCGAATGTATCAGAATGCAATTCTTAACCGTTTTATAATTGCTTATGATTCTTTTCTCTTTCATGATCTGATTTTGTTCACCATATAGTTCGTTCCAACTCCTGTTTCGAGTATATGTTCCATTTGTTCTAATATTTGTATTCTTGCTGTTCCATGATCCGTTTCCATTTCCGATGTTTAGGTTTCGAAAAGAAAAATTATTTTCAGTTACCCCGATATTATCCTTGTCTGAGAAAAAAAAGGTAGAGACGCAGAGAAAAAGTGTCTGTGTCTCCACCTTATGTGTGCTATTTAGGCTCTCCGCTTCGATATCGCTACCGTATTCAGACTGCAAAAAATACTCTCTAACCTTTTTTTTCTCAGACAAGCAAAATAAAGTTCTAATTTTATTTTATATATGCTCTCATCCCGTTTTTCTTTGCGTTCTTTCGCTAGTTCTATATCTTATCTGATAATTTCGGAACCGATTCCGAGAAAATCGSGGCGAAGTCTATTGTGCAACTGCGGCAGTTAACAAGGGAGCCATGTTTAGCCTTCATCTCACAATTTTTTCTAAATTTGCTCATTTATAGATTCAAACAAGGGCTTTCTTGTGGTGTATTTGGTTTTCTGCACAATTTTCTAGAAATCGAGTTATGGGCTGTTTAAGTGATTTCAGTACTAATTTCTCATTATTGGAGTGAGTTTTTGAAAGGTTTAATGAGCGTTTTTCGGCACTTTTTGAGTGTGAATCGTAATTTTAAAAGTTTCTCTACAATCCGACAAAGTTTCCTTATTTTTCAAAAAAAAATTTTTTTTTGATAAAATTTTGCCATGGGTAACCCCCTTTTGCGAAAATTTCAATTTTTCGAAAAAATTTTAAATGTGCTAAAATGAATTCTAAACGCATAAAAATAATAAAATCAGTCTTTTCACAAGATTCTGTAGACTATATCCGTTTTGAAATCCCAAATAAGTGATTTCTTCCGAAACTTCCATAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTCATCCCGTTTTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCTAGAAAATTGTGCAGAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>CTCTCATCCCGTTTTTCTTTGCGTTCTTTCGCTAGTTCTATATCTTATCTGATAATTTCGGAACCGATTCCGAGAAAATCGGGGCGAAGTCTATTGTGCAACTGCGGCAGTTAACAAGGGAGCCATGTTTAGCCTTCATCTCACAATTTTTTCTAAATTTGCTCATTTATAGATTCAAACAAGGGCTTTCTTGTGGTGTATTTGGTTTTCTGCACAATTTTCTAGAA</canonical_amplicon>
		<polymorphic_amplicon>CTCTCATCCCGTTTTTCTTTGCGTTCTTTCGCTAGTTCTATATCTTATCTGATAATTTCGGAACCGATTCCGAGAAAATCGSGGCGAAGTCTATTGTGCAACTGCGGCAGTTAACAAGGGAGCCATGTTTAGCCTTCATCTCACAATTTTTTCTAAATTTGCTCATTTATAGATTCAAACAAGGGCTTTCTTGTGGTGTATTTGGTTTTCTGCACAATTTTCTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33500</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>339972</contig_pos>
        <strand>+</strand>
        <context>GCTTTGAACC[A/C]TGCTTTTGTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCGTAATAGAGTTCAGGACTTTTTCAACGACCAAATTATTGCTTTGAACC</left_flank>
        <right_flank>TGCTTTTGTGGGAAATGGAGCTGTAACGCTAGAGCGATTTATTCGTACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCAAGGAAGAAATGTAAATAACTTGGATCCAGCAGGTCCGGCGCCTGTTGCTAATGTTGCTCCTGCTGCTTCTGCTGCTGCCCCAGTTGCTCGTGCTGCCCCCGCCGTTGCCGCAATGCCAAATCTAGGGGGTGTATTAGATATAAGAAATCCGTTCGCAAACTTATTTGGCAATCAGTTTTTGCAAAACATCAATATTGGACAAATGCATATGCCTTTAAACAATTTCAACCAAGTTTTTATGCAGCAACGTGATCAATATCTTCAACTTCAAGCTTTACAAGCTCAACAACAAGCAGTTCAACATCATGCACTTCAACAGCTGGCTCAGCAGGCTCAAGCTCAAAATCAGTTTCTATGGAACATGAATGTAGCCGTTGCTCAAGCCGACCAGCAACAAGAAAACTTTAATGTGCAATTTCAACTTGATGTTCCACCGCCCGACAATCGTAATAGAGTTCAGGACTTTTTCAACGACCAAATTATTGCTTTGAACCCTGCTTTTGTGGGAAATGGAGCTGTAACGCTAGAGCGATTTATTCGTACTTTGGTTGACAACGTTCGGTTGGATGACGGATGGCAGGAAGTTTATAACTTTTTCTTCGTGGCGCCATATGAAGACAGAGACTTCACTCCACGCGGAAGCCTTCAAATCTGCGCAGTGTTGCAAACCATTTTAAATGCCGGTATCTTGATTCAAGGACGCATGCCCTATACTGGATTTGAGCAACTGCTCCAGGATCTCCAAGAGTTAGATAACGTAGAAGAAGTAGTCGAAGAACCAGAAGTTGTTTGGATTAGAGATGACGATGATGTGGTATTCTTGAATATGCAACAAGCCCAGATGGCACCTCCAGCTGCTGACGATGAGCAACCCGAAGTTTTGATTGTTGCCCCTGTTATTGATAACAATGCCGAGCAGAACATGGCTGACGAAGGTGAACAGGTCGGACAAAATGAAGAAATTCAAGAAGAAGTAGTGGGAAACGAACAAGAGC</canonical>
            <polymorphic>AGTCAAGGAAGAAATGTAAATAACTTGGATCCAGCAGGTCCGGCGCCTGTTGCTAATGTTGCTCCTGCTGCTTCTGCTGCTGCCCCAGTTGCTCGTGCTGCCCCCGCCGTTGCCGCAATGCCAAATCTAGGGGGTGTATTAGATATAAGAAATCCGTTCGCAAACTTATTTGGCAATCAGTTTTTGCAAAACATCAATATTGGACAAATGCATATGCCTTTAAACAATTTCAACCAAGTTTTTATGCAGCAACGTGATCAATATCTTCAACTTCAAGCTTTACAAGCTCAACAACAAGCAGTTCAACATCATGCACTTCAACAGCTGGCTCAGCAGGCTCAAGCTCAAAATCAGTTTCTATGGAACATGAATGTAGCCGTTGCTCAAGCCGACCAGCAACAAGAAAACTTTAATGTGCAATTTCAACTTGATGTTCCACCGCCCGACAATCGTAATAGAGTTCAGGACTTTTTCAACGACCAAATTATTGCTTTGAACCMTGCTTTTGTGGGAAATGGAGCTGTAACGCTAGAGCGATTTATTCGTACTTTGGTTGACAACGTTCGGTTGGATGACGGATGGCAGGAAGTTTATAACTTTTTCTTCGTGGCGCCATATGAAGACAGAGACTTCACTCCACGCGGAAGCCTTCAAATCTGCGCAGTGTTGCAAACCATTTTAAATGCCGGTATCTTGATTCAAGGACGCATGCCCTATACTGGATTTGAGCAACTGCTCCAGGATCTCCAAGAGTTAGATAACGTAGAAGAAGTAGTCGAAGAACCAGAAGTTGTTTGGATTAGAGATGACGATGATGTGGTATTCTTGAATATGCAACAAGCCCAGATGGCACCTCCAGCTGCTGACGATGAGCAACCCGAAGTTTTGATTGTTGCCCCTGTTATTGATAACAATGCCGAGCAGAACATGGCTGACGAAGGTGAACAGGTCGGACAAAATGAAGAAATTCAAGAAGAAGTAGTGGGAAACGAACAAGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGCAACAAGAAAACTTTAAT</pcr_primer_p1>
		<pcr_primer_p2>GGAGTGAAGTCTCTGTCTTCATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CCAGCAACAAGAAAACTTTAATGTGCAATTTCAACTTGATGTTCCACCGCCCGACAATCGTAATAGAGTTCAGGACTTTTTCAACGACCAAATTATTGCTTTGAACCCTGCTTTTGTGGGAAATGGAGCTGTAACGCTAGAGCGATTTATTCGTACTTTGGTTGACAACGTTCGGTTGGATGACGGATGGCAGGAAGTTTATAACTTTTTCTTCGTGGCGCCATATGAAGACAGAGACTTCACTCC</canonical_amplicon>
		<polymorphic_amplicon>CCAGCAACAAGAAAACTTTAATGTGCAATTTCAACTTGATGTTCCACCGCCCGACAATCGTAATAGAGTTCAGGACTTTTTCAACGACCAAATTATTGCTTTGAACCMTGCTTTTGTGGGAAATGGAGCTGTAACGCTAGAGCGATTTATTCGTACTTTGGTTGACAACGTTCGGTTGGATGACGGATGGCAGGAAGTTTATAACTTTTTCTTCGTGGCGCCATATGAAGACAGAGACTTCACTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33501</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>362639</contig_pos>
        <strand></strand>
        <context>tgacaaaata[A/T]ttttgatagt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCCACATATTCCTTGCGATAGATATCAAAAAGTGATCAACTGACAAAATA</left_flank>
        <right_flank>TTTTGATAGTTTGATAAACATTTTATCAGTGGACTATTATTTTATATCTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCGGAGAAGCTATCTTCAGAAAAACGTGTAAACGCCAAATTTGGGNCGCGGTCTTTCCGTTCTTTGTTTCCGTTGCGTTTCTTACAGTTTCGTTTATTTCGGATTTAGAATCTTTCCGATTTGTACGGTCTCGTAGGATTGAAAGGAATGGATGAAACTGGGAAAGGCTGAAAATTTAAAAACAAGCTTTCTTTATTATAGGATAATAAAATAATATATGCACACACTGCAATAAGTAACTAATATTTGATAAGAGACCAAAATCGAAACAGATTTCAGAAGACCAAAGAGCGAGAGATTAGGAGACTTCTTTCAGATCTGAGTAAAACTTTTATTAGAAGAGCCGATTGTTCAATTGTTCTTAGGCATCTCCAGATAGCACTTCTAATACATGTTTTACGGTACACATTCAGTCCAGCAGTATGTCACCCAAACTTTCAACTTTGAGCCCACATATTCCTTGCGATAGATATCAAAAAGTGATCAACTGACAAAATAATTTTGATAGTTTGATAAACATTTTATCAGTGGACTATTATTTTATATCTTTCACATGAAATGAGATATATAGGCTCAGAGTTAACGGTTTGGGAGGCACTCGATTAGATTGTTTACGGTATCTCTTCATATAAAGTGAAAAATAAATAAAAAAATCACACCTCTGTGCTCTGTATTTCAGAATCCCGCTAATATCATTTAGTATACACACGATATCCCCAATTAACTGTGCATAATTTTCCAATTTTCCTCCATTATCGAATCCGATTTTTCAATTGAGAAACCCCTGGATAGAAATCGCACCATCTGCTCGACGTTCATTCGAATTCGTTCTATCTTTGATTTTCTAATTCGCTCACAATTCGGGAACGACGAAGGCAGATGTCGTTATGTGGTGTGCTCGCTGAGGAGAAGATTCGTCGCCGACAATTAATCATTGTCTGCACTAGTGAAGGCGGACGGCAGCAACCGCCGTTCGGATTACACCATCGGAACCACTTC</canonical>
            <polymorphic>TGCGGAGAAGCTATCTTCAGAAAAACGTGTAAACGCCAAATTTGGGNCGCGGTCTTTCCGTTCTTTGTTTCCGTTGCGTTTCTTACAGTTTCGTTTATTTCGGATTTAGAATCTTTCCGATTTGTACGGTCTCGTAGGATTGAAAGGAATGGATGAAACTGGGAAAGGCTGAAAATTTAAAAACAAGCTTTCTTTATTATAGGATAATAAAATAATATATGCACACACTGCAATAAGTAACTAATATTTGATAAGAGACCAAAATCGAAACAGATTTCAGAAGACCAAAGAGCGAGAGATTAGGAGACTTCTTTCAGATCTGAGTAAAACTTTTATTAGAAGAGCCGATTGTTCAATTGTTCTTAGGCATCTCCAGATAGCACTTCTAATACATGTTTTACGGTACACATTCAGTCCAGCAGTATGTCACCCAAACTTTCAACTTTGAGCCCACATATTCCTTGCGATAGATATCAAAAAGTGATCAACTGACAAAATAWTTTTGATAGTTTGATAAACATTTTATCAGTGGACTATTATTTTATATCTTTCACATGAAATGAGATATATAGGCTCAGAGTTAACGGTTTGGGAGGCACTCGATTAGATTGTTTACGGTATCTCTTCATATAAAGTGAAAAATAAATAAAAAAATCACACCTCTGTGCTCTGTATTTCAGAATCCCGCTAATATCATTTAGTATACACACGATATCCCCAATTAACTGTGCATAATTTTCCAATTTTCCTCCATTATCGAATCCGATTTTTCAATTGAGAAACCCCTGGATAGAAATCGCACCATCTGCTCGACGTTCATTCGAATTCGTTCTATCTTTGATTTTCTAATTCGCTCACAATTCGGGAACGACGAAGGCAGATGTCGTTATGTGGTGTGCTCGCTGAGGAGAAGATTCGTCGCCGACAATTAATCATTGTCTGCACTAGTGAAGGCGGACGGCAGCAACCGCCGTTCGGATTACACCATCGGAACCACTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>221 181 144 135 74 68 51 38 31 24 14 11 8</canonical_bands>
                <polymorphic_bands>365 181 135 74 68 51 38 31 24 14 11 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCAGTCCAGCAGTATGTCA</pcr_primer_p1>
		<pcr_primer_p2>AGCACAGAGGTGTGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>ATTCAGTCCAGCAGTATGTCACCCAAACTTTCAACTTTGAGCCCACATATTCCTTGCGATAGATATCAAAAAGTGATCAACTGACAAAATAATTTTGATAGTTTGATAAACATTTTATCAGTGGACTATTATTTTATATCTTTCACATGAAATGAGATATATAGGCTCAGAGTTAACGGTTTGGGAGGCACTCGATTAGATTGTTTACGGTATCTCTTCATATAAAGTGAAAAATAAATAAAAAAATCACACCTCTGTGCT</canonical_amplicon>
		<polymorphic_amplicon>ATTCAGTCCAGCAGTATGTCACCCAAACTTTCAACTTTGAGCCCACATATTCCTTGCGATAGATATCAAAAAGTGATCAACTGACAAAATAWTTTTGATAGTTTGATAAACATTTTATCAGTGGACTATTATTTTATATCTTTCACATGAAATGAGATATATAGGCTCAGAGTTAACGGTTTGGGAGGCACTCGATTAGATTGTTTACGGTATCTCTTCATATAAAGTGAAAAATAAATAAAAAAATCACACCTCTGTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33502</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>371677</contig_pos>
        <strand>+</strand>
        <context>TTTTGCCCTT[C/T]CTTCCAAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTCAGAATAAACATTTCTTCCCTTACTCTATATATACTTTTTTGCCCTT</left_flank>
        <right_flank>CTTCCAAATAATATTTGAATTGATTCATTTTTGCAGAATGCGTGTCATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAGGAGGCGGTAGCGGTGAGGAGGAAACAGGGTGGAGAGAGAGACGGGACACTTATAATGACCATCCACTCAGATCCATTCATATCCTTGTTCTTTTTCTTATTCCTTCTCACCTTGTTTGGAAATTCAATTATTCGGAATCAGGAAGTTCCACGTCTTCAAGAATAGTTGTTCTAAAAAATGTTGATCAGCTTCTTTTTTAGGAGTTTTTATTACACAATTTTAGTATTTAGGATTTCATCTGAAAACCCACTAATACCTGAAATGTTCTAAAATTTGCCATTTTGAGGGCTACAGTATCTCTTTTTGCTTCCTAAGTTTTTTGTTGTAACATTTGTGCAAATGACCTACAAAAACGTTGGCGTGGCAGCTGTCTGGTTACACTCACATTACTCAGCTGCATTCAGACGGACAGGGGTCTCCAGACCTTCACCAGATGCTCTGTACCACTCAGAATAAACATTTCTTCCCTTACTCTATATATACTTTTTTGCCCTTTCTTCCAAATAATATTTGAATTGATTCATTTTTGCAGAATGCGTGTCATTCTTCTTTGTTTTCTGGTAGCAGTGTTGCCCTGTTATGCCGAGGAGGAGCAGAAACTCCAATGGAAGGATGATGACGGTCTCGAGATCAAGATTATCCGACCAATCAAGGCCGAGAAGTGCCCAATCAAATCACAGGATGGAGATGTTCTTGATCAATGGTATAAATTGACTGATAAGGAAGGAAAAGAAATTGGGTCGAATTTCAACAAAAAACCGTATGTTTATTGAAATTAAATTAATTTAATTGAAATTCGAATTCTTTCAGATACACCTTCACTCTTGGAAAGGGACAAGTTATCCCAGGAATGGAGAGAGCAATGACTGGAATGTGCAAGGGAGAAAAGAGAAAGATTGTGATCCCAGGAAGCTTGGGATTCGGAAGCAAGGGACGCGAGCGTGACAGCATTAAGGAAGATCAGACCCTCTACTACACTGTTCAGCTTGTCGATTT</canonical>
            <polymorphic>GTAGGAGGCGGTAGCGGTGAGGAGGAAACAGGGTGGAGAGAGAGACGGGACACTTATAATGACCATCCACTCAGATCCATTCATATCCTTGTTCTTTTTCTTATTCCTTCTCACCTTGTTTGGAAATTCAATTATTCGGAATCAGGAAGTTCCACGTCTTCAAGAATAGTTGTTCTAAAAAATGTTGATCAGCTTCTTTTTTAGGAGTTTTTATTACACAATTTTAGTATTTAGGATTTCATCTGAAAACCCACTAATACCTGAAATGTTCTAAAATTTGCCATTTTGAGGGCTACAGTATCTCTTTTTGCTTCCTAAGTTTTTTGTTGTAACATTTGTGCAAATGACCTACAAAAACGTTGGCGTGGCAGCTGTCTGGTTACACTCACATTACTCAGCTGCATTCAGACGGACAGGGGTCTCCAGACCTTCACCAGATGCTCTGTACCACTCAGAATAAACATTTCTTCCCTTACTCTATATATACTTTTTTGCCCTTYCTTCCAAATAATATTTGAATTGATTCATTTTTGCAGAATGCGTGTCATTCTTCTTTGTTTTCTGGTAGCAGTGTTGCCCTGTTATGCCGAGGAGGAGCAGAAACTCCAATGGAAGGATGATGACGGTCTCGAGATCAAGATTATCCGACCAATCAAGGCCGAGAAGTGCCCAATCAAATCACAGGATGGAGATGTTCTTGATCAATGGTATAAATTGACTGATAAGGAAGGAAAAGAAATTGGGTCGAATTTCAACAAAAAACCGTATGTTTATTGAAATTAAATTAATTTAATTGAAATTCGAATTCTTTCAGATACACCTTCACTCTTGGAAAGGGACAAGTTATCCCAGGAATGGAGAGAGCAATGACTGGAATGTGCAAGGGAGAAAAGAGAAAGATTGTGATCCCAGGAAGCTTGGGATTCGGAAGCAAGGGACGCGAGCGTGACAGCATTAAGGAAGATCAGACCCTCTACTACACTGTTCAGCTTGTCGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTACCACTCAGAATAAACATTTC</pcr_primer_p1>
		<pcr_primer_p2>ATCTCCATCCTGTGATTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTACCACTCAGAATAAACATTTCTTCCCTTACTCTATATATACTTTTTTGCCCTTTCTTCCAAATAATATTTGAATTGATTCATTTTTGCAGAATGCGTGTCATTCTTCTTTGTTTTCTGGTAGCAGTGTTGCCCTGTTATGCCGAGGAGGAGCAGAAACTCCAATGGAAGGATGATGACGGTCTCGAGATCAAGATTATCCGACCAATCAAGGCCGAGAAGTGCCCAATCAAATCACAGGATGGAGAT</canonical_amplicon>
		<polymorphic_amplicon>TGTACCACTCAGAATAAACATTTCTTCCCTTACTCTATATATACTTTTTTGCCCTTYCTTCCAAATAATATTTGAATTGATTCATTTTTGCAGAATGCGTGTCATTCTTCTTTGTTTTCTGGTAGCAGTGTTGCCCTGTTATGCCGAGGAGGAGCAGAAACTCCAATGGAAGGATGATGACGGTCTCGAGATCAAGATTATCCGACCAATCAAGGCCGAGAAGTGCCCAATCAAATCACAGGATGGAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33503</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>384893</contig_pos>
        <strand>+</strand>
        <context>TTTTCATTGG[A/G]TTGGAATCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACCCCTTAACTATTCATTCAGACAATATTGTACAAAATTTTTTCATTGG</left_flank>
        <right_flank>TTGGAATCCAAAAGTGAAATTTTGAAAACAATAAAATAGCAATTAGGAGG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGGTTGATTTTCATACGAATGTTCACTAATTCTATGCACCTAGGCACCCTCGTCGAGGAAGCTAATAGGGAAGTTACCCTATAAGGAACGGCAATGTTGTTAACTTTTCTCTTTTCTTTACATATTTTCTCCTTGTAAAGTCCTTTTGAACATGATCAGACAAACAATATGACGCCTCCATAATATTTACCGTAACCGTTTCCGCGATAAAATCTTTGCTCGGAATTTTCCGGTCGAAATTACATATCAAAGTTCTTCGAGTGTTCGAAGTTTCGATCTGCATGCATGCCCTTGGATCATTTATATAGGTTAATTAAACCCAATTCCGACTTTTTTTCTCCCAGCACAATAACTCGAGTTTAAGTTTGTTTGATCTGTTTTGCACGATTTTTTTTGTATTCTCCCAGATAAAAAACATTTCAATAAAAATTTTTTTTGTTTCAAAACTTACCCCTTAACTATTCATTCAGACAATATTGTACAAAATTTTTTCATTGGGTTGGAATCCAAAAGTGAAATTTTGAAAACAATAAAATAGCAATTAGGAGGACAAAAAAGACAACGAATACCAGATACATAGAAAAATAGAATTTTGTAAACCCGAAAATGACAGAAATTGAAAATTTGAAACCCGTAATCAAAAACGGGACGAAAGGAACAAGCATGGAATTAGCAATACGTGCGTATTGAGGAATGCATTGACACTGTGTTGAATCTGTTGGCTGAGGAAAGAGTTGATGAGAACATTTCATCAGCAATTGAAGACGTTGTGAATGCGTCGATTGGAACACGTGTAGAAGATGTTGTGGTGATTGGGCGAGTCATTGAAGACGACGAACGAGATGATGGAGCAGTTTTACCCCCAAGATTCCTGAATAATCCCAATTTTGAATCTCAAAAGAAGAACGGGTGAGAGTGCTCACAAAAGAAGCTGACGGTGCTCGTTAGATGAGTCATCTGTCAATCGGGATGGTTTGTTTCTGGATTAGTATGGAGTTA</canonical>
            <polymorphic>CAGGTTGATTTTCATACGAATGTTCACTAATTCTATGCACCTAGGCACCCTCGTCGAGGAAGCTAATAGGGAAGTTACCCTATAAGGAACGGCAATGTTGTTAACTTTTCTCTTTTCTTTACATATTTTCTCCTTGTAAAGTCCTTTTGAACATGATCAGACAAACAATATGACGCCTCCATAATATTTACCGTAACCGTTTCCGCGATAAAATCTTTGCTCGGAATTTTCCGGTCGAAATTACATATCAAAGTTCTTCGAGTGTTCGAAGTTTCGATCTGCATGCATGCCCTTGGATCATTTATATAGGTTAATTAAACCCAATTCCGACTTTTTTTCTCCCAGCACAATAACTCGAGTTTAAGTTTGTTTGATCTGTTTTGCACGATTTTTTTTGTATTCTCCCAGATAAAAAACATTTCAATAAAAATTTTTTTTGTTTCAAAACTTACCCCTTAACTATTCATTCAGACAATATTGTACAAAATTTTTTCATTGGRTTGGAATCCAAAAGTGAAATTTTGAAAACAATAAAATAGCAATTAGGAGGACAAAAAAGACAACGAATACCAGATACATAGAAAAATAGAATTTTGTAAACCCGAAAATGACAGAAATTGAAAATTTGAAACCCGTAATCAAAAACGGGACGAAAGGAACAAGCATGGAATTAGCAATACGTGCGTATTGAGGAATGCATTGACACTGTGTTGAATCTGTTGGCTGAGGAAAGAGTTGATGAGAACATTTCATCAGCAATTGAAGACGTTGTGAATGCGTCGATTGGAACACGTGTAGAAGATGTTGTGGTGATTGGGCGAGTCATTGAAGACGACGAACGAGATGATGGAGCAGTTTTACCCCCAAGATTCCTGAATAATCCCAATTTTGAATCTCAAAAGAAGAACGGGTGAGAGTGCTCACAAAAGAAGCTGACGGTGCTCGTTAGATGAGTCATCTGTCAATCGGGATGGTTTGTTTCTGGATTAGTATGGAGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGTTTAAGTTTGTTTGATCTG</pcr_primer_p1>
		<pcr_primer_p2>TTTCGGGTTTACAAAATTCTATT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGAGTTTAAGTTTGTTTGATCTGTTTTGCACGATTTTTTTTGTATTCTCCCAGATAAAAAACATTTCAATAAAAATTTTTTTTGTTTCAAAACTTACCCCTTAACTATTCATTCAGACAATATTGTACAAAATTTTTTCATTGGGTTGGAATCCAAAAGTGAAATTTTGAAAACAATAAAATAGCAATTAGGAGGACAAAAAAGACAACGAATACCAGATACATAGAAAAATAGAATTTTGTAAACCCGAAA</canonical_amplicon>
		<polymorphic_amplicon>CGAGTTTAAGTTTGTTTGATCTGTTTTGCACGATTTTTTTTGTATTCTCCCAGATAAAAAACATTTCAATAAAAATTTTTTTTGTTTCAAAACTTACCCCTTAACTATTCATTCAGACAATATTGTACAAAATTTTTTCATTGGRTTGGAATCCAAAAGTGAAATTTTGAAAACAATAAAATAGCAATTAGGAGGACAAAAAAGACAACGAATACCAGATACATAGAAAAATAGAATTTTGTAAACCCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33504</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>384931</contig_pos>
        <strand>+</strand>
        <context>ACAATAAAAT[A/G]GCAATTAGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTCATTGGGTTGGAATCCAAAAGTGAAATTTTGAAAACAATAAAAT</left_flank>
        <right_flank>GCAATTAGGAGGACAAAAAAGACAACGAATACCAGATACATAGAAAAATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTAGGCACCCTCGTCGAGGAAGCTAATAGGGAAGTTACCCTATAAGGAACGGCAATGTTGTTAACTTTTCTCTTTTCTTTACATATTTTCTCCTTGTAAAGTCCTTTTGAACATGATCAGACAAACAATATGACGCCTCCATAATATTTACCGTAACCGTTTCCGCGATAAAATCTTTGCTCGGAATTTTCCGGTCGAAATTACATATCAAAGTTCTTCGAGTGTTCGAAGTTTCGATCTGCATGCATGCCCTTGGATCATTTATATAGGTTAATTAAACCCAATTCCGACTTTTTTTCTCCCAGCACAATAACTCGAGTTTAAGTTTGTTTGATCTGTTTTGCACGATTTTTTTTGTATTCTCCCAGATAAAAAACATTTCAATAAAAATTTTTTTTGTTTCAAAACTTACCCCTTAACTATTCATTCAGACAATATTGTACAAAATTTTTTCATTGGGTTGGAATCCAAAAGTGAAATTTTGAAAACAATAAAATAGCAATTAGGAGGACAAAAAAGACAACGAATACCAGATACATAGAAAAATAGAATTTTGTAAACCCGAAAATGACAGAAATTGAAAATTTGAAACCCGTAATCAAAAACGGGACGAAAGGAACAAGCATGGAATTAGCAATACGTGCGTATTGAGGAATGCATTGACACTGTGTTGAATCTGTTGGCTGAGGAAAGAGTTGATGAGAACATTTCATCAGCAATTGAAGACGTTGTGAATGCGTCGATTGGAACACGTGTAGAAGATGTTGTGGTGATTGGGCGAGTCATTGAAGACGACGAACGAGATGATGGAGCAGTTTTACCCCCAAGATTCCTGAATAATCCCAATTTTGAATCTCAAAAGAAGAACGGGTGAGAGTGCTCACAAAAGAAGCTGACGGTGCTCGTTAGATGAGTCATCTGTCAATCGGGATGGTTTGTTTCTGGATTAGTATGGAGTTAGTATACATGCATTTGGAAAAGGAAAGTTAGATACCTGC</canonical>
            <polymorphic>ACCTAGGCACCCTCGTCGAGGAAGCTAATAGGGAAGTTACCCTATAAGGAACGGCAATGTTGTTAACTTTTCTCTTTTCTTTACATATTTTCTCCTTGTAAAGTCCTTTTGAACATGATCAGACAAACAATATGACGCCTCCATAATATTTACCGTAACCGTTTCCGCGATAAAATCTTTGCTCGGAATTTTCCGGTCGAAATTACATATCAAAGTTCTTCGAGTGTTCGAAGTTTCGATCTGCATGCATGCCCTTGGATCATTTATATAGGTTAATTAAACCCAATTCCGACTTTTTTTCTCCCAGCACAATAACTCGAGTTTAAGTTTGTTTGATCTGTTTTGCACGATTTTTTTTGTATTCTCCCAGATAAAAAACATTTCAATAAAAATTTTTTTTGTTTCAAAACTTACCCCTTAACTATTCATTCAGACAATATTGTACAAAATTTTTTCATTGGGTTGGAATCCAAAAGTGAAATTTTGAAAACAATAAAATRGCAATTAGGAGGACAAAAAAGACAACGAATACCAGATACATAGAAAAATAGAATTTTGTAAACCCGAAAATGACAGAAATTGAAAATTTGAAACCCGTAATCAAAAACGGGACGAAAGGAACAAGCATGGAATTAGCAATACGTGCGTATTGAGGAATGCATTGACACTGTGTTGAATCTGTTGGCTGAGGAAAGAGTTGATGAGAACATTTCATCAGCAATTGAAGACGTTGTGAATGCGTCGATTGGAACACGTGTAGAAGATGTTGTGGTGATTGGGCGAGTCATTGAAGACGACGAACGAGATGATGGAGCAGTTTTACCCCCAAGATTCCTGAATAATCCCAATTTTGAATCTCAAAAGAAGAACGGGTGAGAGTGCTCACAAAAGAAGCTGACGGTGCTCGTTAGATGAGTCATCTGTCAATCGGGATGGTTTGTTTCTGGATTAGTATGGAGTTAGTATACATGCATTTGGAAAAGGAAAGTTAGATACCTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGTTTAAGTTTGTTTGATCTG</pcr_primer_p1>
		<pcr_primer_p2>TTTCGGGTTTACAAAATTCTATT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGAGTTTAAGTTTGTTTGATCTGTTTTGCACGATTTTTTTTGTATTCTCCCAGATAAAAAACATTTCAATAAAAATTTTTTTTGTTTCAAAACTTACCCCTTAACTATTCATTCAGACAATATTGTACAAAATTTTTTCATTGGGTTGGAATCCAAAAGTGAAATTTTGAAAACAATAAAATAGCAATTAGGAGGACAAAAAAGACAACGAATACCAGATACATAGAAAAATAGAATTTTGTAAACCCGAAA</canonical_amplicon>
		<polymorphic_amplicon>CGAGTTTAAGTTTGTTTGATCTGTTTTGCACGATTTTTTTTGTATTCTCCCAGATAAAAAACATTTCAATAAAAATTTTTTTTGTTTCAAAACTTACCCCTTAACTATTCATTCAGACAATATTGTACAAAATTTTTTCATTGGGTTGGAATCCAAAAGTGAAATTTTGAAAACAATAAAATRGCAATTAGGAGGACAAAAAAGACAACGAATACCAGATACATAGAAAAATAGAATTTTGTAAACCCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33505</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>385073</contig_pos>
        <strand>+</strand>
        <context>ATTAGCAATA[A/C]GTGCGTATTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACCCGTAATCAAAAACGGGACGAAAGGAACAAGCATGGAATTAGCAATA</left_flank>
        <right_flank>GTGCGTATTGAGGAATGCATTGACACTGTGTTGAATCTGTTGGCTGAGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAATATTTACCGTAACCGTTTCCGCGATAAAATCTTTGCTCGGAATTTTCCGGTCGAAATTACATATCAAAGTTCTTCGAGTGTTCGAAGTTTCGATCTGCATGCATGCCCTTGGATCATTTATATAGGTTAATTAAACCCAATTCCGACTTTTTTTCTCCCAGCACAATAACTCGAGTTTAAGTTTGTTTGATCTGTTTTGCACGATTTTTTTTGTATTCTCCCAGATAAAAAACATTTCAATAAAAATTTTTTTTGTTTCAAAACTTACCCCTTAACTATTCATTCAGACAATATTGTACAAAATTTTTTCATTGGGTTGGAATCCAAAAGTGAAATTTTGAAAACAATAAAATAGCAATTAGGAGGACAAAAAAGACAACGAATACCAGATACATAGAAAAATAGAATTTTGTAAACCCGAAAATGACAGAAATTGAAAATTTGAAACCCGTAATCAAAAACGGGACGAAAGGAACAAGCATGGAATTAGCAATACGTGCGTATTGAGGAATGCATTGACACTGTGTTGAATCTGTTGGCTGAGGAAAGAGTTGATGAGAACATTTCATCAGCAATTGAAGACGTTGTGAATGCGTCGATTGGAACACGTGTAGAAGATGTTGTGGTGATTGGGCGAGTCATTGAAGACGACGAACGAGATGATGGAGCAGTTTTACCCCCAAGATTCCTGAATAATCCCAATTTTGAATCTCAAAAGAAGAACGGGTGAGAGTGCTCACAAAAGAAGCTGACGGTGCTCGTTAGATGAGTCATCTGTCAATCGGGATGGTTTGTTTCTGGATTAGTATGGAGTTAGTATACATGCATTTGGAAAAGGAAAGTTAGATACCTGCTGAAATAGAAATAACAGTAGTTGAAGATTGAACCTGTTAGAACTCCGACAGCAAAAACGGTTATGTATTTCCATGGTTCTGAAAAAAAATCATTTGGGCATATGCGAACGATTGAACTGATTTACCGGAACTTCCAGATAAA</canonical>
            <polymorphic>ATAATATTTACCGTAACCGTTTCCGCGATAAAATCTTTGCTCGGAATTTTCCGGTCGAAATTACATATCAAAGTTCTTCGAGTGTTCGAAGTTTCGATCTGCATGCATGCCCTTGGATCATTTATATAGGTTAATTAAACCCAATTCCGACTTTTTTTCTCCCAGCACAATAACTCGAGTTTAAGTTTGTTTGATCTGTTTTGCACGATTTTTTTTGTATTCTCCCAGATAAAAAACATTTCAATAAAAATTTTTTTTGTTTCAAAACTTACCCCTTAACTATTCATTCAGACAATATTGTACAAAATTTTTTCATTGGGTTGGAATCCAAAAGTGAAATTTTGAAAACAATAAAATAGCAATTAGGAGGACAAAAAAGACAACGAATACCAGATACATAGAAAAATAGAATTTTGTAAACCCGAAAATGACAGAAATTGAAAATTTGAAACCCGTAATCAAAAACGGGACGAAAGGAACAAGCATGGAATTAGCAATAMGTGCGTATTGAGGAATGCATTGACACTGTGTTGAATCTGTTGGCTGAGGAAAGAGTTGATGAGAACATTTCATCAGCAATTGAAGACGTTGTGAATGCGTCGATTGGAACACGTGTAGAAGATGTTGTGGTGATTGGGCGAGTCATTGAAGACGACGAACGAGATGATGGAGCAGTTTTACCCCCAAGATTCCTGAATAATCCCAATTTTGAATCTCAAAAGAAGAACGGGTGAGAGTGCTCACAAAAGAAGCTGACGGTGCTCGTTAGATGAGTCATCTGTCAATCGGGATGGTTTGTTTCTGGATTAGTATGGAGTTAGTATACATGCATTTGGAAAAGGAAAGTTAGATACCTGCTGAAATAGAAATAACAGTAGTTGAAGATTGAACCTGTTAGAACTCCGACAGCAAAAACGGTTATGTATTTCCATGGTTCTGAAAAAAAATCATTTGGGCATATGCGAACGATTGAACTGATTTACCGGAACTTCCAGATAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 388 112</canonical_bands>
                <polymorphic_bands>612 388</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>499 389 87 25</canonical_bands>
                <polymorphic_bands>586 389 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGACAACGAATACCAGATA</pcr_primer_p1>
		<pcr_primer_p2>ATCTTCTACACGTGTTCCAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGACAACGAATACCAGATACATAGAAAAATAGAATTTTGTAAACCCGAAAATGACAGAAATTGAAAATTTGAAACCCGTAATCAAAAACGGGACGAAAGGAACAAGCATGGAATTAGCAATACGTGCGTATTGAGGAATGCATTGACACTGTGTTGAATCTGTTGGCTGAGGAAAGAGTTGATGAGAACATTTCATCAGCAATTGAAGACGTTGTGAATGCGTCGATTGGAACACGTGTAGAAGAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGACAACGAATACCAGATACATAGAAAAATAGAATTTTGTAAACCCGAAAATGACAGAAATTGAAAATTTGAAACCCGTAATCAAAAACGGGACGAAAGGAACAAGCATGGAATTAGCAATAMGTGCGTATTGAGGAATGCATTGACACTGTGTTGAATCTGTTGGCTGAGGAAAGAGTTGATGAGAACATTTCATCAGCAATTGAAGACGTTGTGAATGCGTCGATTGGAACACGTGTAGAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33506</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>480432</contig_pos>
        <strand>+</strand>
        <context>CTTGAAATTT[C/G]TCATCAATST</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAACAACAGCAACTCCGAAGAATCGAACCACATTCTTATGCTTGAAATTT</left_flank>
        <right_flank>TCATCAATCTAGCCTCATTCATCATTTCTCTGATCTTCAATTTGTTCAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGATACAGTGGTTGGCATGAAGGTACTGTAGTCCTTGAGCTGCACCAAGACACATTCCAACAAGCTCCAGTTTACTGACATTCTTGTTCTTCTGAAATCAAAAATAGATTGGATTACTGTAGTTAGAAGTTTTCAAATATGATATTAATATATGAAATTTCGCATTATTATTCCAACGTGTCCACTCAGTCGCCGTTGAGCCGCCTATCGTCTGTTTAAAATCGATATATTTCATTTCTTATAAAAAACTATAGTTATTCTGACAATAATCTCATAAAATAATAACTTCTTCTGCTTTTGAGTGGCTCGCCGATGGATCTTCGTTGGGTGCAAAGACATAAAGCCTTACATACGGAATTAGGGGAATGTTGTTAGTAAAGATTACCTGAAGATATGTGTTGAGAGCTCCTCCATTGACCAATTCCAAAAGGATGTACAATGGTTGCTCAACAACAGCAACTCCGAAGAATCGAACCACATTCTTATGCTTGAAATTTCTCATCAATCTAGCCTCATTCATCATTTCTCTGATCTTCAATTTGTTCAACTCTCCTCCTTTCACCATTTTCACTGCAGCATCCAATTTCCTTCCCTTTCTTTGCAAAACGCCTTTTCTGACTTCTCCAAAAGCTCCTTCTCCCAGTTTGTCGCCCAACTTCACTGCCGAATGTCTGTACTCCCATTTTTGCAACTCAATCGGAGTCTTCAAAAAACGGTTTTCCTTCGTTTCCGATGTATTGGAGACGTGATGATTGGCTAGAAGAGCTTCAATAGTCGGAAAAGAGTGGCCTCCTTTGATTGCATACGCTCCATCATAACGACGAATCACCAAATTGCGCATCTTCCGTTCACCAGGGTTTTCGGACTTTGCATCTTTCGTGTCTCCTTCAGTTCCAACACGATCCGAAGAGCAGACGGACAAGACAATGTCTCTTTTGATTCCAAGGTTTCCGTCCTTTCTCTGAATTCATTTTAATAACTAAAACATCTCCCAGATA</canonical>
            <polymorphic>ATGGATACAGTGGTTGGCATGAAGGTACTGTAGTCCTTGAGCTGCACCAAGACACATTCCAACAAGCTCCAGTTTACTGACATTCTTGTTCTTCTGAAATCAAAAATAGATTGGATTACTGTAGTTAGAAGTTTTCAAATATGATATTAATATATGAAATTTCGCATTATTATTCCAACGTGTCCACTCAGTCGCCGTTGAGCCGCCTATCGTCTGTTTAAAATCGATATATTTCATTTCTTATAAAAAACTATAGTTATTCTGACAATAATCTCATAAAATAATAACTTCTTCTGCTTTTGAGTGGCTCGCCGATGGATCTTCGTTGGGTGCAAAGACATAAAGCCTTACATACGGAATTAGGGGAATGTTGTTAGTAAAGATTACCTGAAGATATGTGTTGAGAGCTCCTCCATTGACCAATTCCAAAAGGATGTACAATGGTTGCTCAACAACAGCAACTCCGAAGAATCGAACCACATTCTTATGCTTGAAATTTSTCATCAATCTAGCCTCATTCATCATTTCTCTGATCTTCAATTTGTTCAACTCTCCTCCTTTCACCATTTTCACTGCAGCATCCAATTTCCTTCCCTTTCTTTGCAAAACGCCTTTTCTGACTTCTCCAAAAGCTCCTTCTCCCAGTTTGTCGCCCAACTTCACTGCCGAATGTCTGTACTCCCATTTTTGCAACTCAATCGGAGTCTTCAAAAAACGGTTTTCCTTCGTTTCCGATGTATTGGAGACGTGATGATTGGCTAGAAGAGCTTCAATAGTCGGAAAAGAGTGGCCTCCTTTGATTGCATACGCTCCATCATAACGACGAATCACCAAATTGCGCATCTTCCGTTCACCAGGGTTTTCGGACTTTGCATCTTTCGTGTCTCCTTCAGTTCCAACACGATCCGAAGAGCAGACGGACAAGACAATGTCTCTTTTGATTCCAAGGTTTCCGTCCTTTCTCTGAATTCATTTTAATAACTAAAACATCTCCCAGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCCAAAAGGATGTACAATG</pcr_primer_p1>
		<pcr_primer_p2>AGTACAGACATTCGGCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>AATTCCAAAAGGATGTACAATGGTTGCTCAACAACAGCAACTCCGAAGAATCGAACCACATTCTTATGCTTGAAATTTCTCATCAATCTAGCCTCATTCATCATTTCTCTGATCTTCAATTTGTTCAACTCTCCTCCTTTCACCATTTTCACTGCAGCATCCAATTTCCTTCCCTTTCTTTGCAAAACGCCTTTTCTGACTTCTCCAAAAGCTCCTTCTCCCAGTTTGTCGCCCAACTTCACTGCCGAATGTCTGTACT</canonical_amplicon>
		<polymorphic_amplicon>AATTCCAAAAGGATGTACAATGGTTGCTCAACAACAGCAACTCCGAAGAATCGAACCACATTCTTATGCTTGAAATTTSTCATCAATCTAGCCTCATTCATCATTTCTCTGATCTTCAATTTGTTCAACTCTCCTCCTTTCACCATTTTCACTGCAGCATCCAATTTCCTTCCCTTTCTTTGCAAAACGCCTTTTCTGACTTCTCCAAAAGCTCCTTCTCCCAGTTTGTCGCCCAACTTCACTGCCGAATGTCTGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33507</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>480441</contig_pos>
        <strand>+</strand>
        <context>TSTCATCAAT[C/G]TAGCSTCATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAACTCCGAAGAATCGAACCACATTCTTATGCTTGAAATTTCTCATCAAT</left_flank>
        <right_flank>TAGCCTCATTCATCATTTCTCTGATCTTCAATTTGTTCAACTCTCCTCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGGTTGGCATGAAGGTACTGTAGTCCTTGAGCTGCACCAAGACACATTCCAACAAGCTCCAGTTTACTGACATTCTTGTTCTTCTGAAATCAAAAATAGATTGGATTACTGTAGTTAGAAGTTTTCAAATATGATATTAATATATGAAATTTCGCATTATTATTCCAACGTGTCCACTCAGTCGCCGTTGAGCCGCCTATCGTCTGTTTAAAATCGATATATTTCATTTCTTATAAAAAACTATAGTTATTCTGACAATAATCTCATAAAATAATAACTTCTTCTGCTTTTGAGTGGCTCGCCGATGGATCTTCGTTGGGTGCAAAGACATAAAGCCTTACATACGGAATTAGGGGAATGTTGTTAGTAAAGATTACCTGAAGATATGTGTTGAGAGCTCCTCCATTGACCAATTCCAAAAGGATGTACAATGGTTGCTCAACAACAGCAACTCCGAAGAATCGAACCACATTCTTATGCTTGAAATTTCTCATCAATCTAGCCTCATTCATCATTTCTCTGATCTTCAATTTGTTCAACTCTCCTCCTTTCACCATTTTCACTGCAGCATCCAATTTCCTTCCCTTTCTTTGCAAAACGCCTTTTCTGACTTCTCCAAAAGCTCCTTCTCCCAGTTTGTCGCCCAACTTCACTGCCGAATGTCTGTACTCCCATTTTTGCAACTCAATCGGAGTCTTCAAAAAACGGTTTTCCTTCGTTTCCGATGTATTGGAGACGTGATGATTGGCTAGAAGAGCTTCAATAGTCGGAAAAGAGTGGCCTCCTTTGATTGCATACGCTCCATCATAACGACGAATCACCAAATTGCGCATCTTCCGTTCACCAGGGTTTTCGGACTTTGCATCTTTCGTGTCTCCTTCAGTTCCAACACGATCCGAAGAGCAGACGGACAAGACAATGTCTCTTTTGATTCCAAGGTTTCCGTCCTTTCTCTGAATTCATTTTAATAACTAAAACATCTCCCAGATACCATATTGT</canonical>
            <polymorphic>GTGGTTGGCATGAAGGTACTGTAGTCCTTGAGCTGCACCAAGACACATTCCAACAAGCTCCAGTTTACTGACATTCTTGTTCTTCTGAAATCAAAAATAGATTGGATTACTGTAGTTAGAAGTTTTCAAATATGATATTAATATATGAAATTTCGCATTATTATTCCAACGTGTCCACTCAGTCGCCGTTGAGCCGCCTATCGTCTGTTTAAAATCGATATATTTCATTTCTTATAAAAAACTATAGTTATTCTGACAATAATCTCATAAAATAATAACTTCTTCTGCTTTTGAGTGGCTCGCCGATGGATCTTCGTTGGGTGCAAAGACATAAAGCCTTACATACGGAATTAGGGGAATGTTGTTAGTAAAGATTACCTGAAGATATGTGTTGAGAGCTCCTCCATTGACCAATTCCAAAAGGATGTACAATGGTTGCTCAACAACAGCAACTCCGAAGAATCGAACCACATTCTTATGCTTGAAATTTCTCATCAATSTAGCCTCATTCATCATTTCTCTGATCTTCAATTTGTTCAACTCTCCTCCTTTCACCATTTTCACTGCAGCATCCAATTTCCTTCCCTTTCTTTGCAAAACGCCTTTTCTGACTTCTCCAAAAGCTCCTTCTCCCAGTTTGTCGCCCAACTTCACTGCCGAATGTCTGTACTCCCATTTTTGCAACTCAATCGGAGTCTTCAAAAAACGGTTTTCCTTCGTTTCCGATGTATTGGAGACGTGATGATTGGCTAGAAGAGCTTCAATAGTCGGAAAAGAGTGGCCTCCTTTGATTGCATACGCTCCATCATAACGACGAATCACCAAATTGCGCATCTTCCGTTCACCAGGGTTTTCGGACTTTGCATCTTTCGTGTCTCCTTCAGTTCCAACACGATCCGAAGAGCAGACGGACAAGACAATGTCTCTTTTGATTCCAAGGTTTCCGTCCTTTCTCTGAATTCATTTTAATAACTAAAACATCTCCCAGATACCATATTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 250 250</canonical_bands>
                <polymorphic_bands>750 250</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTCCAAAAGGATGTACAATG</pcr_primer_p1>
		<pcr_primer_p2>AGTACAGACATTCGGCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>AATTCCAAAAGGATGTACAATGGTTGCTCAACAACAGCAACTCCGAAGAATCGAACCACATTCTTATGCTTGAAATTTCTCATCAATCTAGCCTCATTCATCATTTCTCTGATCTTCAATTTGTTCAACTCTCCTCCTTTCACCATTTTCACTGCAGCATCCAATTTCCTTCCCTTTCTTTGCAAAACGCCTTTTCTGACTTCTCCAAAAGCTCCTTCTCCCAGTTTGTCGCCCAACTTCACTGCCGAATGTCTGTACT</canonical_amplicon>
		<polymorphic_amplicon>AATTCCAAAAGGATGTACAATGGTTGCTCAACAACAGCAACTCCGAAGAATCGAACCACATTCTTATGCTTGAAATTTCTCATCAATSTAGCCTCATTCATCATTTCTCTGATCTTCAATTTGTTCAACTCTCCTCCTTTCACCATTTTCACTGCAGCATCCAATTTCCTTCCCTTTCTTTGCAAAACGCCTTTTCTGACTTCTCCAAAAGCTCCTTCTCCCAGTTTGTCGCCCAACTTCACTGCCGAATGTCTGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33508</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>480446</contig_pos>
        <strand>+</strand>
        <context>TCAATSTAGC[C/G]TCATTCATCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCGAAGAATCGAACCACATTCTTATGCTTGAAATTTCTCATCAATCTAGC</left_flank>
        <right_flank>TCATTCATCATTTCTCTGATCTTCAATTTGTTCAACTCTCCTCCTTTCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGCATGAAGGTACTGTAGTCCTTGAGCTGCACCAAGACACATTCCAACAAGCTCCAGTTTACTGACATTCTTGTTCTTCTGAAATCAAAAATAGATTGGATTACTGTAGTTAGAAGTTTTCAAATATGATATTAATATATGAAATTTCGCATTATTATTCCAACGTGTCCACTCAGTCGCCGTTGAGCCGCCTATCGTCTGTTTAAAATCGATATATTTCATTTCTTATAAAAAACTATAGTTATTCTGACAATAATCTCATAAAATAATAACTTCTTCTGCTTTTGAGTGGCTCGCCGATGGATCTTCGTTGGGTGCAAAGACATAAAGCCTTACATACGGAATTAGGGGAATGTTGTTAGTAAAGATTACCTGAAGATATGTGTTGAGAGCTCCTCCATTGACCAATTCCAAAAGGATGTACAATGGTTGCTCAACAACAGCAACTCCGAAGAATCGAACCACATTCTTATGCTTGAAATTTCTCATCAATCTAGCCTCATTCATCATTTCTCTGATCTTCAATTTGTTCAACTCTCCTCCTTTCACCATTTTCACTGCAGCATCCAATTTCCTTCCCTTTCTTTGCAAAACGCCTTTTCTGACTTCTCCAAAAGCTCCTTCTCCCAGTTTGTCGCCCAACTTCACTGCCGAATGTCTGTACTCCCATTTTTGCAACTCAATCGGAGTCTTCAAAAAACGGTTTTCCTTCGTTTCCGATGTATTGGAGACGTGATGATTGGCTAGAAGAGCTTCAATAGTCGGAAAAGAGTGGCCTCCTTTGATTGCATACGCTCCATCATAACGACGAATCACCAAATTGCGCATCTTCCGTTCACCAGGGTTTTCGGACTTTGCATCTTTCGTGTCTCCTTCAGTTCCAACACGATCCGAAGAGCAGACGGACAAGACAATGTCTCTTTTGATTCCAAGGTTTCCGTCCTTTCTCTGAATTCATTTTAATAACTAAAACATCTCCCAGATACCATATTGTCTCAC</canonical>
            <polymorphic>TGGCATGAAGGTACTGTAGTCCTTGAGCTGCACCAAGACACATTCCAACAAGCTCCAGTTTACTGACATTCTTGTTCTTCTGAAATCAAAAATAGATTGGATTACTGTAGTTAGAAGTTTTCAAATATGATATTAATATATGAAATTTCGCATTATTATTCCAACGTGTCCACTCAGTCGCCGTTGAGCCGCCTATCGTCTGTTTAAAATCGATATATTTCATTTCTTATAAAAAACTATAGTTATTCTGACAATAATCTCATAAAATAATAACTTCTTCTGCTTTTGAGTGGCTCGCCGATGGATCTTCGTTGGGTGCAAAGACATAAAGCCTTACATACGGAATTAGGGGAATGTTGTTAGTAAAGATTACCTGAAGATATGTGTTGAGAGCTCCTCCATTGACCAATTCCAAAAGGATGTACAATGGTTGCTCAACAACAGCAACTCCGAAGAATCGAACCACATTCTTATGCTTGAAATTTCTCATCAATCTAGCSTCATTCATCATTTCTCTGATCTTCAATTTGTTCAACTCTCCTCCTTTCACCATTTTCACTGCAGCATCCAATTTCCTTCCCTTTCTTTGCAAAACGCCTTTTCTGACTTCTCCAAAAGCTCCTTCTCCCAGTTTGTCGCCCAACTTCACTGCCGAATGTCTGTACTCCCATTTTTGCAACTCAATCGGAGTCTTCAAAAAACGGTTTTCCTTCGTTTCCGATGTATTGGAGACGTGATGATTGGCTAGAAGAGCTTCAATAGTCGGAAAAGAGTGGCCTCCTTTGATTGCATACGCTCCATCATAACGACGAATCACCAAATTGCGCATCTTCCGTTCACCAGGGTTTTCGGACTTTGCATCTTTCGTGTCTCCTTCAGTTCCAACACGATCCGAAGAGCAGACGGACAAGACAATGTCTCTTTTGATTCCAAGGTTTCCGTCCTTTCTCTGAATTCATTTTAATAACTAAAACATCTCCCAGATACCATATTGTCTCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>224 136 126 120 105 105 62 38 27 25 23 9</canonical_bands>
                <polymorphic_bands>225 224 136 126 105 62 38 27 25 23 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTCCAAAAGGATGTACAATG</pcr_primer_p1>
		<pcr_primer_p2>AGTACAGACATTCGGCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>AATTCCAAAAGGATGTACAATGGTTGCTCAACAACAGCAACTCCGAAGAATCGAACCACATTCTTATGCTTGAAATTTCTCATCAATCTAGCCTCATTCATCATTTCTCTGATCTTCAATTTGTTCAACTCTCCTCCTTTCACCATTTTCACTGCAGCATCCAATTTCCTTCCCTTTCTTTGCAAAACGCCTTTTCTGACTTCTCCAAAAGCTCCTTCTCCCAGTTTGTCGCCCAACTTCACTGCCGAATGTCTGTACT</canonical_amplicon>
		<polymorphic_amplicon>AATTCCAAAAGGATGTACAATGGTTGCTCAACAACAGCAACTCCGAAGAATCGAACCACATTCTTATGCTTGAAATTTCTCATCAATCTAGCSTCATTCATCATTTCTCTGATCTTCAATTTGTTCAACTCTCCTCCTTTCACCATTTTCACTGCAGCATCCAATTTCCTTCCCTTTCTTTGCAAAACGCCTTTTCTGACTTCTCCAAAAGCTCCTTCTCCCAGTTTGTCGCCCAACTTCACTGCCGAATGTCTGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33509</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>480462</contig_pos>
        <strand>+</strand>
        <context>CATCATTTCT[C/G]TGATCTTCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CATTCTTATGCTTGAAATTTCTCATCAATCTAGCCTCATTCATCATTTCT</left_flank>
        <right_flank>TGATCTTCAATTTGTTCAACTCTCCTCCTTTCACCATTTTCACTGCAGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGTCCTTGAGCTGCACCAAGACACATTCCAACAAGCTCCAGTTTACTGACATTCTTGTTCTTCTGAAATCAAAAATAGATTGGATTACTGTAGTTAGAAGTTTTCAAATATGATATTAATATATGAAATTTCGCATTATTATTCCAACGTGTCCACTCAGTCGCCGTTGAGCCGCCTATCGTCTGTTTAAAATCGATATATTTCATTTCTTATAAAAAACTATAGTTATTCTGACAATAATCTCATAAAATAATAACTTCTTCTGCTTTTGAGTGGCTCGCCGATGGATCTTCGTTGGGTGCAAAGACATAAAGCCTTACATACGGAATTAGGGGAATGTTGTTAGTAAAGATTACCTGAAGATATGTGTTGAGAGCTCCTCCATTGACCAATTCCAAAAGGATGTACAATGGTTGCTCAACAACAGCAACTCCGAAGAATCGAACCACATTCTTATGCTTGAAATTTCTCATCAATCTAGCCTCATTCATCATTTCTCTGATCTTCAATTTGTTCAACTCTCCTCCTTTCACCATTTTCACTGCAGCATCCAATTTCCTTCCCTTTCTTTGCAAAACGCCTTTTCTGACTTCTCCAAAAGCTCCTTCTCCCAGTTTGTCGCCCAACTTCACTGCCGAATGTCTGTACTCCCATTTTTGCAACTCAATCGGAGTCTTCAAAAAACGGTTTTCCTTCGTTTCCGATGTATTGGAGACGTGATGATTGGCTAGAAGAGCTTCAATAGTCGGAAAAGAGTGGCCTCCTTTGATTGCATACGCTCCATCATAACGACGAATCACCAAATTGCGCATCTTCCGTTCACCAGGGTTTTCGGACTTTGCATCTTTCGTGTCTCCTTCAGTTCCAACACGATCCGAAGAGCAGACGGACAAGACAATGTCTCTTTTGATTCCAAGGTTTCCGTCCTTTCTCTGAATTCATTTTAATAACTAAAACATCTCCCAGATACCATATTGTCTCACACAAACCGTCAACTTC</canonical>
            <polymorphic>TAGTCCTTGAGCTGCACCAAGACACATTCCAACAAGCTCCAGTTTACTGACATTCTTGTTCTTCTGAAATCAAAAATAGATTGGATTACTGTAGTTAGAAGTTTTCAAATATGATATTAATATATGAAATTTCGCATTATTATTCCAACGTGTCCACTCAGTCGCCGTTGAGCCGCCTATCGTCTGTTTAAAATCGATATATTTCATTTCTTATAAAAAACTATAGTTATTCTGACAATAATCTCATAAAATAATAACTTCTTCTGCTTTTGAGTGGCTCGCCGATGGATCTTCGTTGGGTGCAAAGACATAAAGCCTTACATACGGAATTAGGGGAATGTTGTTAGTAAAGATTACCTGAAGATATGTGTTGAGAGCTCCTCCATTGACCAATTCCAAAAGGATGTACAATGGTTGCTCAACAACAGCAACTCCGAAGAATCGAACCACATTCTTATGCTTGAAATTTCTCATCAATCTAGCCTCATTCATCATTTCTSTGATCTTCAATTTGTTCAACTCTCCTCCTTTCACCATTTTCACTGCAGCATCCAATTTCCTTCCCTTTCTTTGCAAAACGCCTTTTCTGACTTCTCCAAAAGCTCCTTCTCCCAGTTTGTCGCCCAACTTCACTGCCGAATGTCTGTACTCCCATTTTTGCAACTCAATCGGAGTCTTCAAAAAACGGTTTTCCTTCGTTTCCGATGTATTGGAGACGTGATGATTGGCTAGAAGAGCTTCAATAGTCGGAAAAGAGTGGCCTCCTTTGATTGCATACGCTCCATCATAACGACGAATCACCAAATTGCGCATCTTCCGTTCACCAGGGTTTTCGGACTTTGCATCTTTCGTGTCTCCTTCAGTTCCAACACGATCCGAAGAGCAGACGGACAAGACAATGTCTCTTTTGATTCCAAGGTTTCCGTCCTTTCTCTGAATTCATTTTAATAACTAAAACATCTCCCAGATACCATATTGTCTCACACAAACCGTCAACTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>202 168 87 86 83 66 65 65 58 46 42 32</canonical_bands>
                <polymorphic_bands>202 168 153 86 83 65 65 58 46 42 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGAATCGAACCACATTCTTA</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAAGACTCCGATTGAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAGAATCGAACCACATTCTTATGCTTGAAATTTCTCATCAATCTAGCCTCATTCATCATTTCTCTGATCTTCAATTTGTTCAACTCTCCTCCTTTCACCATTTTCACTGCAGCATCCAATTTCCTTCCCTTTCTTTGCAAAACGCCTTTTCTGACTTCTCCAAAAGCTCCTTCTCCCAGTTTGTCGCCCAACTTCACTGCCGAATGTCTGTACTCCCATTTTTGCAACTCAATCGGAGTCTTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAAGAATCGAACCACATTCTTATGCTTGAAATTTCTCATCAATCTAGCCTCATTCATCATTTCTSTGATCTTCAATTTGTTCAACTCTCCTCCTTTCACCATTTTCACTGCAGCATCCAATTTCCTTCCCTTTCTTTGCAAAACGCCTTTTCTGACTTCTCCAAAAGCTCCTTCTCCCAGTTTGTCGCCCAACTTCACTGCCGAATGTCTGTACTCCCATTTTTGCAACTCAATCGGAGTCTTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33510</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>501046</contig_pos>
        <strand></strand>
        <context>ACAGTYACAt[A/T]ctgtaaaact</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCTACAGTATCAATTTTCTTCAAAACATTGGAAGAATCTACAGTCACAT</left_flank>
        <right_flank>CTGTAAAACTGTAATAAAACGCCACCTGTATGTAGTAAGATGCCCCCTCT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACTAGTTGTGATGCAATTATTATGGCTAATATGTCAGGCGAGTTCTGGCAAAAGATGGAAACACGAAAAAGGTTTGTGGATCTGAAAGTTGAGCCATTTTGATTGTTCTCATAATGTGATCACAAACCTTTTCTTCTGCCTTTCCAATATATTTTTCCATTTTTCCACAAGCTTCCGTAAATCATCAAATGGAATTTCATTGTCTCGCCAAATCTATAAAAAATATTACATACAAAAAATCATTCAACGCCATGGAGTTATATTAAAAATCACTTACCAATGCAGTTTTACTTCCAAACTTGGAAACTTCTTCCAGAAACTCTAGACCAAAGTTTCTTCCCATTTTGTTGTGTTGAAGAAATTGTACAAACTGGAAGAAGTGTCATCCTCCTACCTCAATTTCCTTCAATTTTCTAAATTGGCCTTCATTATTCTTTGTTTTCAGTGTATCTACAGTATCAATTTTCTTCAAAACATTGGAAGAATCTACAGTCACATACTGTAAAACTGTAATAAAACGCCACCTGTATGTAGTAAGATGCCCCCTCTAACACAACGCCATCCTTATACAGGTATTACTCTGGTCTAATTTCGATGCGCGTTGTGGCCGAAAATACGACGATGTGCGGAGCTTAAGTCCGGTGGTGAAATCCTTACAGGCGCATTTGAAGGAGCATGTATTTTCGTGAATATTTTCTGGCCTTTTTTCGATTTTTCGAAAAAAAATAAGAATAAAGTGTTTTCCTGATTTGGGTAGCGGAGAAATCTGAAAAATCCACACCATTTTCTTATGATGCTACCCTAATGATCCGGCAACAAAACAATTTTTGTTACCTTGCATCACCCAAAAAAAACCTCTCCAAAAAATAACGCCATAGATTTATATTACAGTTCTTACTGTATGTTAATAACTCATATGCAACACCTACACAAATAATAAAACTCATAAAAGTGAATCGAAATGATATATAAATCTCTTGCGCTATGTTTTTTACCGTT</canonical>
            <polymorphic>CACTAGTTGTGATGCAATTATTATGGCTAATATGTCAGGCGAGTTCTGGCAAAAGATGGAAACACGAAAAAGGTTTGTGGATCTGAAAGTTGAGCCATTTTGATTGTTCTCATAATGTGATCACAAACCTTTTCTTCTGCCTTTCCAATATATTTTTCCATTTTTCCACAAGCTTCCGTAAATCATCAAATGGAATTTCATTGTCTCGCCAAATCTATAAAAAATATTACATACAAAAAATCATTCAACGCCATGGAGTTATATTAAAAATCACTTACCAATGCAGTTTTACTTCCAAACTTGGAAACTTCTTCCAGAAACTCTAGACCAAAGTTTCTTCCCATTTTGTTGTGTTGAAGAAATTGTACAAACTGGAAGAAGTGTCATCCTCCTACCTCAATTTCCTTCAATTTTCTAAATTGGCCTTCATTATTCTTTGTTTTCAGTGTATCTACAGTATCAATTTTCTTCAAAACATTGGAAGAATCTACAGTCACATWCTGTAAAACTGTAATAAAACGCCACCTGTATGTAGTAAGATGCCCCCTCTAACACAACGCCATCCTTATACAGGTATTACTCTGGTCTAATTTCGATGCGCGTTGTGGCCGAAAATACGACGATGTGCGGAGCTTAAGTCCGGTGGTGAAATCCTTACAGGCGCATTTGAAGGAGCATGTATTTTCGTGAATATTTTCTGGCCTTTTTTCGATTTTTCGAAAAAAAATAAGAATAAAGTGTTTTCCTGATTTGGGTAGCGGAGAAATCTGAAAAATCCACACCATTTTCTTATGATGCTACCCTAATGATCCGGCAACAAAACAATTTTTGTTACCTTGCATCACCCAAAAAAAACCTCTCCAAAAAATAACGCCATAGATTTATATTACAGTTCTTACTGTATGTTAATAACTCATATGCAACACCTACACAAATAATAAAACTCATAAAAGTGAATCGAAATGATATATAAATCTCTTGCGCTATGTTTTTTACCGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>456 381 97 36 10 9 8 3</canonical_bands>
                <polymorphic_bands>456 381 97 36 18 9 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTTTTCAGTGTATCTACAGTATCA</pcr_primer_p1>
		<pcr_primer_p2>TCAGGAAAACACTTTATTCTTATTT</pcr_primer_p2>
		<pcr_amplicon_size>313</pcr_amplicon_size>
		<canonical_amplicon>TTGTTTTCAGTGTATCTACAGTATCAATTTTCTTCAAAACATTGGAAGAATCTACAGTCACATACTGTAAAACTGTAATAAAACGCCACCTGTATGTAGTAAGATGCCCCCTCTAACACAACGCCATCCTTATACAGGTATTACTCTGGTCTAATTTCGATGCGCGTTGTGGCCGAAAATACGACGATGTGCGGAGCTTAAGTCCGGTGGTGAAATCCTTACAGGCGCATTTGAAGGAGCATGTATTTTCGTGAATATTTTCTGGCCTTTTTTCGATTTTTCGAAAAAAAATAAGAATAAAGTGTTTTCCTGA</canonical_amplicon>
		<polymorphic_amplicon>TTGTTTTCAGTGTATCTACAGTATCAATTTTCTTCAAAACATTGGAAGAATCTACAGTCACATWCTGTAAAACTGTAATAAAACGCCACCTGTATGTAGTAAGATGCCCCCTCTAACACAACGCCATCCTTATACAGGTATTACTCTGGTCTAATTTCGATGCGCGTTGTGGCCGAAAATACGACGATGTGCGGAGCTTAAGTCCGGTGGTGAAATCCTTACAGGCGCATTTGAAGGAGCATGTATTTTCGTGAATATTTTCTGGCCTTTTTTCGATTTTTCGAAAAAAAATAAGAATAAAGTGTTTTCCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33511</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>561898</contig_pos>
        <strand>+</strand>
        <context>GAAGACATTC[A/C]YTACTTGGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTCGTTTTTGGATGTATTCTGTGTAGGACATATCCCGGAAGAAGACATTC</left_flank>
        <right_flank>CTACTTGGAAGTTCGTTCTGAAATGCTTCGATGTTTTTCTTTGGACTATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGATTCTTTATGCTCTTTCAATGCAGAATTTTGTCTAGTTACAGTCGCCAATCGCCTCTCAATATCTGGTTCGTTTTCCCATGCTAATTTACAAACATTCAATTGTTCTGACGTCACTCGATGCATTGATAGCCCCTTGATTTTTTCTCTGAAATATCATTATTCTAATTGGTAAACTCCTGACATTGTTACCTCAGATGACTCATATCGTTTCCTGATTTTCTAGTCCGGAACAGCTTGAATCCAGTAACAACATCTTCTAATTCTTTCTCGTGCATCTCTTCGTTCTTTTTCTTCGAATACATATAGTCTCTTCTTTTTCTTGAAATCGCGATCCATCCAATTTTAGATAAAAATAGAGAAAGTTCAATGATAGTGAACACAGACATTCCCATGAACATTCCCATGTTTCCTCCGATATCAGAAAGAAGTTCCGTCAGAGACATTCCTCGTTTTTGGATGTATTCTGTGTAGGACATATCCCGGAAGAAGACATTCACTACTTGGAAGTTCGTTCTGAAATGCTTCGATGTTTTTCTTTGGACTATGAAATTTGGCTTCCATTTTTCAACCAATCCTTTGAAGGGGGATTCCGACCAAAAAAATTTAATTGCAAAAAAATGTTTGAAAAGTTATGCATCTTCCTAATATTATTACGAAAAATACTTTAAAAAAATCCAAACACCCCGAAAAATGCCGTTGAAAATATAAAAAAGGTTGCGAAGAGGGACGAGGATTTGAGTTTTCAAGTGGCGGATAGTGGTTTTTCAAATTGAAAAAGCTGCCATCTAAAAAAAGCTCTTCATAGCCTAGGTTTCTCAATGCACAAGAAACCAAATACTCGTCCCTTGTCGCAACATTTGTATATTTTCGCTGACTTTTTGTGGTAACTTCGAGTTTTTTTCGGAGTTTTTTCGTAATACTTTTAGGACAATTTTTGGTCGGAACCCCATCTTCAGACTTTTGGTCCGATACTTACTTCATATGATTTATCCTCCA</canonical>
            <polymorphic>TTGATTCTTTATGCTCTTTCAATGCAGAATTTTGTCTAGTTACAGTCGCCAATCGCCTCTCAATATCTGGTTCGTTTTCCCATGCTAATTTACAAACATTCAATTGTTCTGACGTCACTCGATGCATTGATAGCCCCTTGATTTTTTCTCTGAAATATCATTATTCTAATTGGTAAACTCCTGACATTGTTACCTCAGATGACTCATATCGTTTCCTGATTTTCTAGTCCGGAACAGCTTGAATCCAGTAACAACATCTTCTAATTCTTTCTCGTGCATCTCTTCGTTCTTTTTCTTCGAATACATATAGTCTCTTCTTTTTCTTGAAATCGCGATCCATCCAATTTTAGATAAAAATAGAGAAAGTTCAATGATAGTGAACACAGACATTCCCATGAACATTCCCATGTTTCCTCCGATATCAGAAAGAAGTTCCGTCAGAGACATTCCTCGTTTTTGGATGTATTCTGTGTAGGACATATCCCGGAAGAAGACATTCMCTACTTGGAAGTTCGTTCTGAAATGCTTCGATGTTTTTCTTTGGACTATGAAATTTGGCTTCCATTTTTCAACCAATCCTTTGAAGGGGGATTCCGACCAAAAAAATTTAATTGCAAAAAAATGTTTGAAAAGTTATGCATCTTCCTAATATTATTACGAAAAATACTTTAAAAAAATCCAAACACCCCGAAAAATGCCGTTGAAAATATAAAAAAGGTTGCGAAGAGGGACGAGGATTTGAGTTTTCAAGTGGCGGATAGTGGTTTTTCAAATTGAAAAAGCTGCCATCTAAAAAAAGCTCTTCATAGCCTAGGTTTCTCAATGCACAAGAAACCAAATACTCGTCCCTTGTCGCAACATTTGTATATTTTCGCTGACTTTTTGTGGTAACTTCGAGTTTTTTTCGGAGTTTTTTCGTAATACTTTTAGGACAATTTTTGGTCGGAACCCCATCTTCAGACTTTTGGTCCGATACTTACTTCATATGATTTATCCTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>185 159 117 113 103 89 68 64 60 28 10 4</canonical_bands>
                <polymorphic_bands>213 159 117 113 103 89 68 64 60 10 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTCCGATATCAGAAAGAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTAGGAAGATGCATAACTTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CCTCCGATATCAGAAAGAAGTTCCGTCAGAGACATTCCTCGTTTTTGGATGTATTCTGTGTAGGACATATCCCGGAAGAAGACATTCACTACTTGGAAGTTCGTTCTGAAATGCTTCGATGTTTTTCTTTGGACTATGAAATTTGGCTTCCATTTTTCAACCAATCCTTTGAAGGGGGATTCCGACCAAAAAAATTTAATTGCAAAAAAATGTTTGAAAAGTTATGCATCTTCCTAA</canonical_amplicon>
		<polymorphic_amplicon>CCTCCGATATCAGAAAGAAGTTCCGTCAGAGACATTCCTCGTTTTTGGATGTATTCTGTGTAGGACATATCCCGGAAGAAGACATTCMCTACTTGGAAGTTCGTTCTGAAATGCTTCGATGTTTTTCTTTGGACTATGAAATTTGGCTTCCATTTTTCAACCAATCCTTTGAAGGGGGATTCCGACCAAAAAAATTTAATTGCAAAAAAATGTTTGAAAAGTTATGCATCTTCCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33512</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>561899</contig_pos>
        <strand>+</strand>
        <context>AAGACATTCM[C/T]TACTTGGAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGTTTTTGGATGTATTCTGTGTAGGACATATCCCGGAAGAAGACATTCA</left_flank>
        <right_flank>TACTTGGAAGTTCGTTCTGAAATGCTTCGATGTTTTTCTTTGGACTATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATTCTTTATGCTCTTTCAATGCAGAATTTTGTCTAGTTACAGTCGCCAATCGCCTCTCAATATCTGGTTCGTTTTCCCATGCTAATTTACAAACATTCAATTGTTCTGACGTCACTCGATGCATTGATAGCCCCTTGATTTTTTCTCTGAAATATCATTATTCTAATTGGTAAACTCCTGACATTGTTACCTCAGATGACTCATATCGTTTCCTGATTTTCTAGTCCGGAACAGCTTGAATCCAGTAACAACATCTTCTAATTCTTTCTCGTGCATCTCTTCGTTCTTTTTCTTCGAATACATATAGTCTCTTCTTTTTCTTGAAATCGCGATCCATCCAATTTTAGATAAAAATAGAGAAAGTTCAATGATAGTGAACACAGACATTCCCATGAACATTCCCATGTTTCCTCCGATATCAGAAAGAAGTTCCGTCAGAGACATTCCTCGTTTTTGGATGTATTCTGTGTAGGACATATCCCGGAAGAAGACATTCACTACTTGGAAGTTCGTTCTGAAATGCTTCGATGTTTTTCTTTGGACTATGAAATTTGGCTTCCATTTTTCAACCAATCCTTTGAAGGGGGATTCCGACCAAAAAAATTTAATTGCAAAAAAATGTTTGAAAAGTTATGCATCTTCCTAATATTATTACGAAAAATACTTTAAAAAAATCCAAACACCCCGAAAAATGCCGTTGAAAATATAAAAAAGGTTGCGAAGAGGGACGAGGATTTGAGTTTTCAAGTGGCGGATAGTGGTTTTTCAAATTGAAAAAGCTGCCATCTAAAAAAAGCTCTTCATAGCCTAGGTTTCTCAATGCACAAGAAACCAAATACTCGTCCCTTGTCGCAACATTTGTATATTTTCGCTGACTTTTTGTGGTAACTTCGAGTTTTTTTCGGAGTTTTTTCGTAATACTTTTAGGACAATTTTTGGTCGGAACCCCATCTTCAGACTTTTGGTCCGATACTTACTTCATATGATTTATCCTCCAT</canonical>
            <polymorphic>TGATTCTTTATGCTCTTTCAATGCAGAATTTTGTCTAGTTACAGTCGCCAATCGCCTCTCAATATCTGGTTCGTTTTCCCATGCTAATTTACAAACATTCAATTGTTCTGACGTCACTCGATGCATTGATAGCCCCTTGATTTTTTCTCTGAAATATCATTATTCTAATTGGTAAACTCCTGACATTGTTACCTCAGATGACTCATATCGTTTCCTGATTTTCTAGTCCGGAACAGCTTGAATCCAGTAACAACATCTTCTAATTCTTTCTCGTGCATCTCTTCGTTCTTTTTCTTCGAATACATATAGTCTCTTCTTTTTCTTGAAATCGCGATCCATCCAATTTTAGATAAAAATAGAGAAAGTTCAATGATAGTGAACACAGACATTCCCATGAACATTCCCATGTTTCCTCCGATATCAGAAAGAAGTTCCGTCAGAGACATTCCTCGTTTTTGGATGTATTCTGTGTAGGACATATCCCGGAAGAAGACATTCAYTACTTGGAAGTTCGTTCTGAAATGCTTCGATGTTTTTCTTTGGACTATGAAATTTGGCTTCCATTTTTCAACCAATCCTTTGAAGGGGGATTCCGACCAAAAAAATTTAATTGCAAAAAAATGTTTGAAAAGTTATGCATCTTCCTAATATTATTACGAAAAATACTTTAAAAAAATCCAAACACCCCGAAAAATGCCGTTGAAAATATAAAAAAGGTTGCGAAGAGGGACGAGGATTTGAGTTTTCAAGTGGCGGATAGTGGTTTTTCAAATTGAAAAAGCTGCCATCTAAAAAAAGCTCTTCATAGCCTAGGTTTCTCAATGCACAAGAAACCAAATACTCGTCCCTTGTCGCAACATTTGTATATTTTCGCTGACTTTTTGTGGTAACTTCGAGTTTTTTTCGGAGTTTTTTCGTAATACTTTTAGGACAATTTTTGGTCGGAACCCCATCTTCAGACTTTTGGTCCGATACTTACTTCATATGATTTATCCTCCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>185 159 116 114 103 89 68 64 60 28 10 4</canonical_bands>
                <polymorphic_bands>213 159 116 114 103 89 68 64 60 10 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTCCGATATCAGAAAGAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTAGGAAGATGCATAACTTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CCTCCGATATCAGAAAGAAGTTCCGTCAGAGACATTCCTCGTTTTTGGATGTATTCTGTGTAGGACATATCCCGGAAGAAGACATTCACTACTTGGAAGTTCGTTCTGAAATGCTTCGATGTTTTTCTTTGGACTATGAAATTTGGCTTCCATTTTTCAACCAATCCTTTGAAGGGGGATTCCGACCAAAAAAATTTAATTGCAAAAAAATGTTTGAAAAGTTATGCATCTTCCTAA</canonical_amplicon>
		<polymorphic_amplicon>CCTCCGATATCAGAAAGAAGTTCCGTCAGAGACATTCCTCGTTTTTGGATGTATTCTGTGTAGGACATATCCCGGAAGAAGACATTCAYTACTTGGAAGTTCGTTCTGAAATGCTTCGATGTTTTTCTTTGGACTATGAAATTTGGCTTCCATTTTTCAACCAATCCTTTGAAGGGGGATTCCGACCAAAAAAATTTAATTGCAAAAAAATGTTTGAAAAGTTATGCATCTTCCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33513</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>561922</contig_pos>
        <strand>+</strand>
        <context>CGTTCTGAAA[A/T]GCTTCGATGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGGACATATCCCGGAAGAAGACATTCACTACTTGGAAGTTCGTTCTGAAA</left_flank>
        <right_flank>GCTTCGATGTTTTTCTTTGGACTATGAAATTTGGCTTCCATTTTTCAACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAATTTTGTCTAGTTACAGTCGCCAATCGCCTCTCAATATCTGGTTCGTTTTCCCATGCTAATTTACAAACATTCAATTGTTCTGACGTCACTCGATGCATTGATAGCCCCTTGATTTTTTCTCTGAAATATCATTATTCTAATTGGTAAACTCCTGACATTGTTACCTCAGATGACTCATATCGTTTCCTGATTTTCTAGTCCGGAACAGCTTGAATCCAGTAACAACATCTTCTAATTCTTTCTCGTGCATCTCTTCGTTCTTTTTCTTCGAATACATATAGTCTCTTCTTTTTCTTGAAATCGCGATCCATCCAATTTTAGATAAAAATAGAGAAAGTTCAATGATAGTGAACACAGACATTCCCATGAACATTCCCATGTTTCCTCCGATATCAGAAAGAAGTTCCGTCAGAGACATTCCTCGTTTTTGGATGTATTCTGTGTAGGACATATCCCGGAAGAAGACATTCACTACTTGGAAGTTCGTTCTGAAATGCTTCGATGTTTTTCTTTGGACTATGAAATTTGGCTTCCATTTTTCAACCAATCCTTTGAAGGGGGATTCCGACCAAAAAAATTTAATTGCAAAAAAATGTTTGAAAAGTTATGCATCTTCCTAATATTATTACGAAAAATACTTTAAAAAAATCCAAACACCCCGAAAAATGCCGTTGAAAATATAAAAAAGGTTGCGAAGAGGGACGAGGATTTGAGTTTTCAAGTGGCGGATAGTGGTTTTTCAAATTGAAAAAGCTGCCATCTAAAAAAAGCTCTTCATAGCCTAGGTTTCTCAATGCACAAGAAACCAAATACTCGTCCCTTGTCGCAACATTTGTATATTTTCGCTGACTTTTTGTGGTAACTTCGAGTTTTTTTCGGAGTTTTTTCGTAATACTTTTAGGACAATTTTTGGTCGGAACCCCATCTTCAGACTTTTGGTCCGATACTTACTTCATATGATTTATCCTCCATCCTTTTTGCTTGCTCAACCACAT</canonical>
            <polymorphic>CAGAATTTTGTCTAGTTACAGTCGCCAATCGCCTCTCAATATCTGGTTCGTTTTCCCATGCTAATTTACAAACATTCAATTGTTCTGACGTCACTCGATGCATTGATAGCCCCTTGATTTTTTCTCTGAAATATCATTATTCTAATTGGTAAACTCCTGACATTGTTACCTCAGATGACTCATATCGTTTCCTGATTTTCTAGTCCGGAACAGCTTGAATCCAGTAACAACATCTTCTAATTCTTTCTCGTGCATCTCTTCGTTCTTTTTCTTCGAATACATATAGTCTCTTCTTTTTCTTGAAATCGCGATCCATCCAATTTTAGATAAAAATAGAGAAAGTTCAATGATAGTGAACACAGACATTCCCATGAACATTCCCATGTTTCCTCCGATATCAGAAAGAAGTTCCGTCAGAGACATTCCTCGTTTTTGGATGTATTCTGTGTAGGACATATCCCGGAAGAAGACATTCACTACTTGGAAGTTCGTTCTGAAAWGCTTCGATGTTTTTCTTTGGACTATGAAATTTGGCTTCCATTTTTCAACCAATCCTTTGAAGGGGGATTCCGACCAAAAAAATTTAATTGCAAAAAAATGTTTGAAAAGTTATGCATCTTCCTAATATTATTACGAAAAATACTTTAAAAAAATCCAAACACCCCGAAAAATGCCGTTGAAAATATAAAAAAGGTTGCGAAGAGGGACGAGGATTTGAGTTTTCAAGTGGCGGATAGTGGTTTTTCAAATTGAAAAAGCTGCCATCTAAAAAAAGCTCTTCATAGCCTAGGTTTCTCAATGCACAAGAAACCAAATACTCGTCCCTTGTCGCAACATTTGTATATTTTCGCTGACTTTTTGTGGTAACTTCGAGTTTTTTTCGGAGTTTTTTCGTAATACTTTTAGGACAATTTTTGGTCGGAACCCCATCTTCAGACTTTTGGTCCGATACTTACTTCATATGATTTATCCTCCATCCTTTTTGCTTGCTCAACCACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGATGTATTCTGTGTAGGACAT</pcr_primer_p1>
		<pcr_primer_p2>TATATTTTCAACGGCATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TGGATGTATTCTGTGTAGGACATATCCCGGAAGAAGACATTCACTACTTGGAAGTTCGTTCTGAAATGCTTCGATGTTTTTCTTTGGACTATGAAATTTGGCTTCCATTTTTCAACCAATCCTTTGAAGGGGGATTCCGACCAAAAAAATTTAATTGCAAAAAAATGTTTGAAAAGTTATGCATCTTCCTAATATTATTACGAAAAATACTTTAAAAAAATCCAAACACCCCGAAAAATGCCGTTGAAAATATA</canonical_amplicon>
		<polymorphic_amplicon>TGGATGTATTCTGTGTAGGACATATCCCGGAAGAAGACATTCACTACTTGGAAGTTCGTTCTGAAAWGCTTCGATGTTTTTCTTTGGACTATGAAATTTGGCTTCCATTTTTCAACCAATCCTTTGAAGGGGGATTCCGACCAAAAAAATTTAATTGCAAAAAAATGTTTGAAAAGTTATGCATCTTCCTAATATTATTACGAAAAATACTTTAAAAAAATCCAAACACCCCGAAAAATGCCGTTGAAAATATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33514</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>785864</contig_pos>
        <strand>+</strand>
        <context>GTAAATTCTA[A/C]GATGTTTTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCGAAAGTTAGTATTTTGTGTCTGAACCTAATTTTTGACGTAAATTCTA</left_flank>
        <right_flank>GATGTTTTTGTTTCTTTTTAAAAAAACCTGCTCAATTATTTCCACCTGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTGAGCTCAAAGTGTAGGCACAGATTGAGCTACATGGTTGCACACTACCGACCGAAGGCTTTCAGTTCAATTATCTCGGTTCTCATAAGAGACATCAAACATTTGTCAACGGATAAAATTCTTATCATTTTTAAAAACGAAATTCTCGAAAAAAGCATATTTTTAGTAACCCAAACGAATTTCGTGTTCTTTCTTAAATCCAGGGAATCCAATTAGTTCCAAATTTCGATTTTTTTTAGAAATCTGATGTTCCATTCATTCAAAACTTTCAAAAGTTCGAATTTCTCTTACAGCAGCTTTAATGTCTACGATATTTCTTTTTTTCCAAAGTTCTGACACCATACTTTTTAAAAATTAGGCTTTCTAAAAATTTAGGCTAAAGTTATTTTTTTTCGATCCCTGAAAACTTTCACATCCACTTTTTGAACCATTCGGAATCTCTGAGCAATCGAAAGTTAGTATTTTGTGTCTGAACCTAATTTTTGACGTAAATTCTAAGATGTTTTTGTTTCTTTTTAAAAAAACCTGCTCAATTATTTCCACCTGATTTTTTTACACACTTCGTTGTCTGACATCACTTGTTGACACATCGACGAAAGTGTGTTCGTTAGTGTCTCTCTCCCACGCAATTTCATAGATCTCAACCGAGTTTTTGAGCTTAATTTACCTCGATTCCTTGAAAGATTTCAAAACATTTTAACGGTAATTTCCTTTCCTATTATCACAAACATTTTATTAGTTGACACATTTTTGATATCTCTCACAGGAACCAAGATAATTCTTTTGAAGAAAATATCACTTCTAGATCTAAAAACCATTTGCCGATCTTCAAAGTTCGAACTCTATAGTCACATCTTCCAGAATCGACCGCGAACGCCAACGTGTCCAGCACGAGGTCATCGAGTTGACCGCCACCATCGACCAACTCCAAAAGGATAAGCATACCGCCGAGAAGGCCGCCGAACGTTTCGAGGCTCAAGCCAACGAGCTCGCCAACA</canonical>
            <polymorphic>AGCTGAGCTCAAAGTGTAGGCACAGATTGAGCTACATGGTTGCACACTACCGACCGAAGGCTTTCAGTTCAATTATCTCGGTTCTCATAAGAGACATCAAACATTTGTCAACGGATAAAATTCTTATCATTTTTAAAAACGAAATTCTCGAAAAAAGCATATTTTTAGTAACCCAAACGAATTTCGTGTTCTTTCTTAAATCCAGGGAATCCAATTAGTTCCAAATTTCGATTTTTTTTAGAAATCTGATGTTCCATTCATTCAAAACTTTCAAAAGTTCGAATTTCTCTTACAGCAGCTTTAATGTCTACGATATTTCTTTTTTTCCAAAGTTCTGACACCATACTTTTTAAAAATTAGGCTTTCTAAAAATTTAGGCTAAAGTTATTTTTTTTCGATCCCTGAAAACTTTCACATCCACTTTTTGAACCATTCGGAATCTCTGAGCAATCGAAAGTTAGTATTTTGTGTCTGAACCTAATTTTTGACGTAAATTCTAMGATGTTTTTGTTTCTTTTTAAAAAAACCTGCTCAATTATTTCCACCTGATTTTTTTACACACTTCGTTGTCTGACATCACTTGTTGACACATCGACGAAAGTGTGTTCGTTAGTGTCTCTCTCCCACGCAATTTCATAGATCTCAACCGAGTTTTTGAGCTTAATTTACCTCGATTCCTTGAAAGATTTCAAAACATTTTAACGGTAATTTCCTTTCCTATTATCACAAACATTTTATTAGTTGACACATTTTTGATATCTCTCACAGGAACCAAGATAATTCTTTTGAAGAAAATATCACTTCTAGATCTAAAAACCATTTGCCGATCTTCAAAGTTCGAACTCTATAGTCACATCTTCCAGAATCGACCGCGAACGCCAACGTGTCCAGCACGAGGTCATCGAGTTGACCGCCACCATCGACCAACTCCAAAAGGATAAGCATACCGCCGAGAAGGCCGCCGAACGTTTCGAGGCTCAAGCCAACGAGCTCGCCAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 440 54 3</canonical_bands>
                <polymorphic_bands>557 440 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAGTTCTGACACCATACTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCAGACAACGAAGTGTGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAGTTCTGACACCATACTTTTTAAAAATTAGGCTTTCTAAAAATTTAGGCTAAAGTTATTTTTTTTCGATCCCTGAAAACTTTCACATCCACTTTTTGAACCATTCGGAATCTCTGAGCAATCGAAAGTTAGTATTTTGTGTCTGAACCTAATTTTTGACGTAAATTCTAAGATGTTTTTGTTTCTTTTTAAAAAAACCTGCTCAATTATTTCCACCTGATTTTTTTACACACTTCGTTGTCTGACAT</canonical_amplicon>
		<polymorphic_amplicon>CAAAGTTCTGACACCATACTTTTTAAAAATTAGGCTTTCTAAAAATTTAGGCTAAAGTTATTTTTTTTCGATCCCTGAAAACTTTCACATCCACTTTTTGAACCATTCGGAATCTCTGAGCAATCGAAAGTTAGTATTTTGTGTCTGAACCTAATTTTTGACGTAAATTCTAMGATGTTTTTGTTTCTTTTTAAAAAAACCTGCTCAATTATTTCCACCTGATTTTTTTACACACTTCGTTGTCTGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33515</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>786034</contig_pos>
        <strand></strand>
        <context>cttaatttac[C/T]tcgattcctt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCCCACGCAATTTCATAGATCTCAACCGAGTTTTTGAGCTTAATTTAC</left_flank>
        <right_flank>TCGATTCCTTGAAAGATTTCAAAACATTTTAACGGTAATTTCCTTTCCTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCCAAACGAATTTCGTGTTCTTTCTTAAATCCAGGGAATCCAATTAGTTCCAAATTTCGATTTTTTTTAGAAATCTGATGTTCCATTCATTCAAAACTTTCAAAAGTTCGAATTTCTCTTACAGCAGCTTTAATGTCTACGATATTTCTTTTTTTCCAAAGTTCTGACACCATACTTTTTAAAAATTAGGCTTTCTAAAAATTTAGGCTAAAGTTATTTTTTTTCGATCCCTGAAAACTTTCACATCCACTTTTTGAACCATTCGGAATCTCTGAGCAATCGAAAGTTAGTATTTTGTGTCTGAACCTAATTTTTGACGTAAATTCTAAGATGTTTTTGTTTCTTTTTAAAAAAACCTGCTCAATTATTTCCACCTGATTTTTTTACACACTTCGTTGTCTGACATCACTTGTTGACACATCGACGAAAGTGTGTTCGTTAGTGTCTCTCTCCCACGCAATTTCATAGATCTCAACCGAGTTTTTGAGCTTAATTTACCTCGATTCCTTGAAAGATTTCAAAACATTTTAACGGTAATTTCCTTTCCTATTATCACAAACATTTTATTAGTTGACACATTTTTGATATCTCTCACAGGAACCAAGATAATTCTTTTGAAGAAAATATCACTTCTAGATCTAAAAACCATTTGCCGATCTTCAAAGTTCGAACTCTATAGTCACATCTTCCAGAATCGACCGCGAACGCCAACGTGTCCAGCACGAGGTCATCGAGTTGACCGCCACCATCGACCAACTCCAAAAGGATAAGCATACCGCCGAGAAGGCCGCCGAACGTTTCGAGGCTCAAGCCAACGAGCTCGCCAACAAGGTTGAGGACTTGGGCAAGCATGTCAACGATCTCGCCCAACAACGTCAACGCCTTCAGGCCGAGAACAATGATCTCCTCAAGGTAAACGTTTTGAACCTAAAGATCCTTCCATCTTATTTATAAAATATCATGTGCTATGGTGCCTTCTTATCTTTTTTTTCGAAACTT</canonical>
            <polymorphic>ACCCAAACGAATTTCGTGTTCTTTCTTAAATCCAGGGAATCCAATTAGTTCCAAATTTCGATTTTTTTTAGAAATCTGATGTTCCATTCATTCAAAACTTTCAAAAGTTCGAATTTCTCTTACAGCAGCTTTAATGTCTACGATATTTCTTTTTTTCCAAAGTTCTGACACCATACTTTTTAAAAATTAGGCTTTCTAAAAATTTAGGCTAAAGTTATTTTTTTTCGATCCCTGAAAACTTTCACATCCACTTTTTGAACCATTCGGAATCTCTGAGCAATCGAAAGTTAGTATTTTGTGTCTGAACCTAATTTTTGACGTAAATTCTAAGATGTTTTTGTTTCTTTTTAAAAAAACCTGCTCAATTATTTCCACCTGATTTTTTTACACACTTCGTTGTCTGACATCACTTGTTGACACATCGACGAAAGTGTGTTCGTTAGTGTCTCTCTCCCACGCAATTTCATAGATCTCAACCGAGTTTTTGAGCTTAATTTACYTCGATTCCTTGAAAGATTTCAAAACATTTTAACGGTAATTTCCTTTCCTATTATCACAAACATTTTATTAGTTGACACATTTTTGATATCTCTCACAGGAACCAAGATAATTCTTTTGAAGAAAATATCACTTCTAGATCTAAAAACCATTTGCCGATCTTCAAAGTTCGAACTCTATAGTCACATCTTCCAGAATCGACCGCGAACGCCAACGTGTCCAGCACGAGGTCATCGAGTTGACCGCCACCATCGACCAACTCCAAAAGGATAAGCATACCGCCGAGAAGGCCGCCGAACGTTTCGAGGCTCAAGCCAACGAGCTCGCCAACAAGGTTGAGGACTTGGGCAAGCATGTCAACGATCTCGCCCAACAACGTCAACGCCTTCAGGCCGAGAACAATGATCTCCTCAAGGTAAACGTTTTGAACCTAAAGATCCTTCCATCTTATTTATAAAATATCATGTGCTATGGTGCCTTCTTATCTTTTTTTTCGAAACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTGTTCGTTAGTGTCTCTCTC</pcr_primer_p1>
		<pcr_primer_p2>CGATTCTGGAAGATGTGACTAT</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>GTGTGTTCGTTAGTGTCTCTCTCCCACGCAATTTCATAGATCTCAACCGAGTTTTTGAGCTTAATTTACCTCGATTCCTTGAAAGATTTCAAAACATTTTAACGGTAATTTCCTTTCCTATTATCACAAACATTTTATTAGTTGACACATTTTTGATATCTCTCACAGGAACCAAGATAATTCTTTTGAAGAAAATATCACTTCTAGATCTAAAAACCATTTGCCGATCTTCAAAGTTCGAACTCTATAGTCACATCTTCCAGAATCG</canonical_amplicon>
		<polymorphic_amplicon>GTGTGTTCGTTAGTGTCTCTCTCCCACGCAATTTCATAGATCTCAACCGAGTTTTTGAGCTTAATTTACYTCGATTCCTTGAAAGATTTCAAAACATTTTAACGGTAATTTCCTTTCCTATTATCACAAACATTTTATTAGTTGACACATTTTTGATATCTCTCACAGGAACCAAGATAATTCTTTTGAAGAAAATATCACTTCTAGATCTAAAAACCATTTGCCGATCTTCAAAGTTCGAACTCTATAGTCACATCTTCCAGAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33516</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>786089</contig_pos>
        <strand></strand>
        <context>ttcctattat[C/T]acaaacattt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCTTGAAAGATTTCAAAACATTTTAACGGTAATTTCCTTTCCTATTAT</left_flank>
        <right_flank>ACAAACATTTTATTAGTTGACACATTTTTGATATCTCTCACAGGAACCAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGATTTTTTTTAGAAATCTGATGTTCCATTCATTCAAAACTTTCAAAAGTTCGAATTTCTCTTACAGCAGCTTTAATGTCTACGATATTTCTTTTTTTCCAAAGTTCTGACACCATACTTTTTAAAAATTAGGCTTTCTAAAAATTTAGGCTAAAGTTATTTTTTTTCGATCCCTGAAAACTTTCACATCCACTTTTTGAACCATTCGGAATCTCTGAGCAATCGAAAGTTAGTATTTTGTGTCTGAACCTAATTTTTGACGTAAATTCTAAGATGTTTTTGTTTCTTTTTAAAAAAACCTGCTCAATTATTTCCACCTGATTTTTTTACACACTTCGTTGTCTGACATCACTTGTTGACACATCGACGAAAGTGTGTTCGTTAGTGTCTCTCTCCCACGCAATTTCATAGATCTCAACCGAGTTTTTGAGCTTAATTTACCTCGATTCCTTGAAAGATTTCAAAACATTTTAACGGTAATTTCCTTTCCTATTATCACAAACATTTTATTAGTTGACACATTTTTGATATCTCTCACAGGAACCAAGATAATTCTTTTGAAGAAAATATCACTTCTAGATCTAAAAACCATTTGCCGATCTTCAAAGTTCGAACTCTATAGTCACATCTTCCAGAATCGACCGCGAACGCCAACGTGTCCAGCACGAGGTCATCGAGTTGACCGCCACCATCGACCAACTCCAAAAGGATAAGCATACCGCCGAGAAGGCCGCCGAACGTTTCGAGGCTCAAGCCAACGAGCTCGCCAACAAGGTTGAGGACTTGGGCAAGCATGTCAACGATCTCGCCCAACAACGTCAACGCCTTCAGGCCGAGAACAATGATCTCCTCAAGGTAAACGTTTTGAACCTAAAGATCCTTCCATCTTATTTATAAAATATCATGTGCTATGGTGCCTTCTTATCTTTTTTTTCGAAACTTCCTATTCTTTTTTATTGAAAAAAAAGTAGTTCCCTCTACTCTCAGAGTGTGTGTG</canonical>
            <polymorphic>TTTCGATTTTTTTTAGAAATCTGATGTTCCATTCATTCAAAACTTTCAAAAGTTCGAATTTCTCTTACAGCAGCTTTAATGTCTACGATATTTCTTTTTTTCCAAAGTTCTGACACCATACTTTTTAAAAATTAGGCTTTCTAAAAATTTAGGCTAAAGTTATTTTTTTTCGATCCCTGAAAACTTTCACATCCACTTTTTGAACCATTCGGAATCTCTGAGCAATCGAAAGTTAGTATTTTGTGTCTGAACCTAATTTTTGACGTAAATTCTAAGATGTTTTTGTTTCTTTTTAAAAAAACCTGCTCAATTATTTCCACCTGATTTTTTTACACACTTCGTTGTCTGACATCACTTGTTGACACATCGACGAAAGTGTGTTCGTTAGTGTCTCTCTCCCACGCAATTTCATAGATCTCAACCGAGTTTTTGAGCTTAATTTACCTCGATTCCTTGAAAGATTTCAAAACATTTTAACGGTAATTTCCTTTCCTATTATYACAAACATTTTATTAGTTGACACATTTTTGATATCTCTCACAGGAACCAAGATAATTCTTTTGAAGAAAATATCACTTCTAGATCTAAAAACCATTTGCCGATCTTCAAAGTTCGAACTCTATAGTCACATCTTCCAGAATCGACCGCGAACGCCAACGTGTCCAGCACGAGGTCATCGAGTTGACCGCCACCATCGACCAACTCCAAAAGGATAAGCATACCGCCGAGAAGGCCGCCGAACGTTTCGAGGCTCAAGCCAACGAGCTCGCCAACAAGGTTGAGGACTTGGGCAAGCATGTCAACGATCTCGCCCAACAACGTCAACGCCTTCAGGCCGAGAACAATGATCTCCTCAAGGTAAACGTTTTGAACCTAAAGATCCTTCCATCTTATTTATAAAATATCATGTGCTATGGTGCCTTCTTATCTTTTTTTTCGAAACTTCCTATTCTTTTTTATTGAAAAAAAAGTAGTTCCCTCTACTCTCAGAGTGTGTGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>220 115 100 75 74 74 53 50 35 33 23 21 18 18 15 14 11 10 10 8 7 6 2 2 2 2 2 0</canonical_bands>
                <polymorphic_bands>220 121 115 75 74 74 53 50 35 33 23 18 18 15 14 11 10 10 8 7 6 2 2 2 2 2 0</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGCAATTTCATAGATCTCAA</pcr_primer_p1>
		<pcr_primer_p2>CGATTCTGGAAGATGTGACTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ACGCAATTTCATAGATCTCAACCGAGTTTTTGAGCTTAATTTACCTCGATTCCTTGAAAGATTTCAAAACATTTTAACGGTAATTTCCTTTCCTATTATCACAAACATTTTATTAGTTGACACATTTTTGATATCTCTCACAGGAACCAAGATAATTCTTTTGAAGAAAATATCACTTCTAGATCTAAAAACCATTTGCCGATCTTCAAAGTTCGAACTCTATAGTCACATCTTCCAGAATCG</canonical_amplicon>
		<polymorphic_amplicon>ACGCAATTTCATAGATCTCAACCGAGTTTTTGAGCTTAATTTACCTCGATTCCTTGAAAGATTTCAAAACATTTTAACGGTAATTTCCTTTCCTATTATYACAAACATTTTATTAGTTGACACATTTTTGATATCTCTCACAGGAACCAAGATAATTCTTTTGAAGAAAATATCACTTCTAGATCTAAAAACCATTTGCCGATCTTCAAAGTTCGAACTCTATAGTCACATCTTCCAGAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33517</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>786131</contig_pos>
        <strand>+</strand>
        <context>tatctctcac[A/T]ggaaccaaga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCTATTATCACAAACATTTTATTAGTTGACACATTTTTGATATCTCTCAC</left_flank>
        <right_flank>GGAACCAAGATAATTCTTTTGAAGAAAATATCACTTCTAGATCTAAAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTCAAAAGTTCGAATTTCTCTTACAGCAGCTTTAATGTCTACGATATTTCTTTTTTTCCAAAGTTCTGACACCATACTTTTTAAAAATTAGGCTTTCTAAAAATTTAGGCTAAAGTTATTTTTTTTCGATCCCTGAAAACTTTCACATCCACTTTTTGAACCATTCGGAATCTCTGAGCAATCGAAAGTTAGTATTTTGTGTCTGAACCTAATTTTTGACGTAAATTCTAAGATGTTTTTGTTTCTTTTTAAAAAAACCTGCTCAATTATTTCCACCTGATTTTTTTACACACTTCGTTGTCTGACATCACTTGTTGACACATCGACGAAAGTGTGTTCGTTAGTGTCTCTCTCCCACGCAATTTCATAGATCTCAACCGAGTTTTTGAGCTTAATTTACCTCGATTCCTTGAAAGATTTCAAAACATTTTAACGGTAATTTCCTTTCCTATTATCACAAACATTTTATTAGTTGACACATTTTTGATATCTCTCACAGGAACCAAGATAATTCTTTTGAAGAAAATATCACTTCTAGATCTAAAAACCATTTGCCGATCTTCAAAGTTCGAACTCTATAGTCACATCTTCCAGAATCGACCGCGAACGCCAACGTGTCCAGCACGAGGTCATCGAGTTGACCGCCACCATCGACCAACTCCAAAAGGATAAGCATACCGCCGAGAAGGCCGCCGAACGTTTCGAGGCTCAAGCCAACGAGCTCGCCAACAAGGTTGAGGACTTGGGCAAGCATGTCAACGATCTCGCCCAACAACGTCAACGCCTTCAGGCCGAGAACAATGATCTCCTCAAGGTAAACGTTTTGAACCTAAAGATCCTTCCATCTTATTTATAAAATATCATGTGCTATGGTGCCTTCTTATCTTTTTTTTCGAAACTTCCTATTCTTTTTTATTGAAAAAAAAGTAGTTCCCTCTACTCTCAGAGTGTGTGTGCAAATAGAGTACTCGAGATAAATGGGGCGCTTTTTTCTTGCC</canonical>
            <polymorphic>CTTTCAAAAGTTCGAATTTCTCTTACAGCAGCTTTAATGTCTACGATATTTCTTTTTTTCCAAAGTTCTGACACCATACTTTTTAAAAATTAGGCTTTCTAAAAATTTAGGCTAAAGTTATTTTTTTTCGATCCCTGAAAACTTTCACATCCACTTTTTGAACCATTCGGAATCTCTGAGCAATCGAAAGTTAGTATTTTGTGTCTGAACCTAATTTTTGACGTAAATTCTAAGATGTTTTTGTTTCTTTTTAAAAAAACCTGCTCAATTATTTCCACCTGATTTTTTTACACACTTCGTTGTCTGACATCACTTGTTGACACATCGACGAAAGTGTGTTCGTTAGTGTCTCTCTCCCACGCAATTTCATAGATCTCAACCGAGTTTTTGAGCTTAATTTACCTCGATTCCTTGAAAGATTTCAAAACATTTTAACGGTAATTTCCTTTCCTATTATCACAAACATTTTATTAGTTGACACATTTTTGATATCTCTCACWGGAACCAAGATAATTCTTTTGAAGAAAATATCACTTCTAGATCTAAAAACCATTTGCCGATCTTCAAAGTTCGAACTCTATAGTCACATCTTCCAGAATCGACCGCGAACGCCAACGTGTCCAGCACGAGGTCATCGAGTTGACCGCCACCATCGACCAACTCCAAAAGGATAAGCATACCGCCGAGAAGGCCGCCGAACGTTTCGAGGCTCAAGCCAACGAGCTCGCCAACAAGGTTGAGGACTTGGGCAAGCATGTCAACGATCTCGCCCAACAACGTCAACGCCTTCAGGCCGAGAACAATGATCTCCTCAAGGTAAACGTTTTGAACCTAAAGATCCTTCCATCTTATTTATAAAATATCATGTGCTATGGTGCCTTCTTATCTTTTTTTTCGAAACTTCCTATTCTTTTTTATTGAAAAAAAAGTAGTTCCCTCTACTCTCAGAGTGTGTGTGCAAATAGAGTACTCGAGATAAATGGGGCGCTTTTTTCTTGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGCAATTTCATAGATCTCAA</pcr_primer_p1>
		<pcr_primer_p2>CGATTCTGGAAGATGTGACTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ACGCAATTTCATAGATCTCAACCGAGTTTTTGAGCTTAATTTACCTCGATTCCTTGAAAGATTTCAAAACATTTTAACGGTAATTTCCTTTCCTATTATCACAAACATTTTATTAGTTGACACATTTTTGATATCTCTCACAGGAACCAAGATAATTCTTTTGAAGAAAATATCACTTCTAGATCTAAAAACCATTTGCCGATCTTCAAAGTTCGAACTCTATAGTCACATCTTCCAGAATCG</canonical_amplicon>
		<polymorphic_amplicon>ACGCAATTTCATAGATCTCAACCGAGTTTTTGAGCTTAATTTACCTCGATTCCTTGAAAGATTTCAAAACATTTTAACGGTAATTTCCTTTCCTATTATCACAAACATTTTATTAGTTGACACATTTTTGATATCTCTCACWGGAACCAAGATAATTCTTTTGAAGAAAATATCACTTCTAGATCTAAAAACCATTTGCCGATCTTCAAAGTTCGAACTCTATAGTCACATCTTCCAGAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33518</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>786166</contig_pos>
        <strand></strand>
        <context>AAAATATCAC[T/A]TCTAGATCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTGATATCTCTCACAGGAACCAAGATAATTCTTTTGAAGAAAATATCAC</left_flank>
        <right_flank>TCTAGATCTAAAAACCATTTGCCGATCTTCAAAGTTCGAACTCTATAGTC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGTCTACGATATTTCTTTTTTTCCAAAGTTCTGACACCATACTTTTTAAAAATTAGGCTTTCTAAAAATTTAGGCTAAAGTTATTTTTTTTCGATCCCTGAAAACTTTCACATCCACTTTTTGAACCATTCGGAATCTCTGAGCAATCGAAAGTTAGTATTTTGTGTCTGAACCTAATTTTTGACGTAAATTCTAAGATGTTTTTGTTTCTTTTTAAAAAAACCTGCTCAATTATTTCCACCTGATTTTTTTACACACTTCGTTGTCTGACATCACTTGTTGACACATCGACGAAAGTGTGTTCGTTAGTGTCTCTCTCCCACGCAATTTCATAGATCTCAACCGAGTTTTTGAGCTTAATTTACCTCGATTCCTTGAAAGATTTCAAAACATTTTAACGGTAATTTCCTTTCCTATTATCACAAACATTTTATTAGTTGACACATTTTTGATATCTCTCACAGGAACCAAGATAATTCTTTTGAAGAAAATATCACTTCTAGATCTAAAAACCATTTGCCGATCTTCAAAGTTCGAACTCTATAGTCACATCTTCCAGAATCGACCGCGAACGCCAACGTGTCCAGCACGAGGTCATCGAGTTGACCGCCACCATCGACCAACTCCAAAAGGATAAGCATACCGCCGAGAAGGCCGCCGAACGTTTCGAGGCTCAAGCCAACGAGCTCGCCAACAAGGTTGAGGACTTGGGCAAGCATGTCAACGATCTCGCCCAACAACGTCAACGCCTTCAGGCCGAGAACAATGATCTCCTCAAGGTAAACGTTTTGAACCTAAAGATCCTTCCATCTTATTTATAAAATATCATGTGCTATGGTGCCTTCTTATCTTTTTTTTCGAAACTTCCTATTCTTTTTTATTGAAAAAAAAGTAGTTCCCTCTACTCTCAGAGTGTGTGTGCAAATAGAGTACTCGAGATAAATGGGGCGCTTTTTTCTTGCCCCAAAGAAAACTCTTCACCAGTGTGGCGTTCAGTT</canonical>
            <polymorphic>AATGTCTACGATATTTCTTTTTTTCCAAAGTTCTGACACCATACTTTTTAAAAATTAGGCTTTCTAAAAATTTAGGCTAAAGTTATTTTTTTTCGATCCCTGAAAACTTTCACATCCACTTTTTGAACCATTCGGAATCTCTGAGCAATCGAAAGTTAGTATTTTGTGTCTGAACCTAATTTTTGACGTAAATTCTAAGATGTTTTTGTTTCTTTTTAAAAAAACCTGCTCAATTATTTCCACCTGATTTTTTTACACACTTCGTTGTCTGACATCACTTGTTGACACATCGACGAAAGTGTGTTCGTTAGTGTCTCTCTCCCACGCAATTTCATAGATCTCAACCGAGTTTTTGAGCTTAATTTACCTCGATTCCTTGAAAGATTTCAAAACATTTTAACGGTAATTTCCTTTCCTATTATCACAAACATTTTATTAGTTGACACATTTTTGATATCTCTCACAGGAACCAAGATAATTCTTTTGAAGAAAATATCACWTCTAGATCTAAAAACCATTTGCCGATCTTCAAAGTTCGAACTCTATAGTCACATCTTCCAGAATCGACCGCGAACGCCAACGTGTCCAGCACGAGGTCATCGAGTTGACCGCCACCATCGACCAACTCCAAAAGGATAAGCATACCGCCGAGAAGGCCGCCGAACGTTTCGAGGCTCAAGCCAACGAGCTCGCCAACAAGGTTGAGGACTTGGGCAAGCATGTCAACGATCTCGCCCAACAACGTCAACGCCTTCAGGCCGAGAACAATGATCTCCTCAAGGTAAACGTTTTGAACCTAAAGATCCTTCCATCTTATTTATAAAATATCATGTGCTATGGTGCCTTCTTATCTTTTTTTTCGAAACTTCCTATTCTTTTTTATTGAAAAAAAAGTAGTTCCCTCTACTCTCAGAGTGTGTGTGCAAATAGAGTACTCGAGATAAATGGGGCGCTTTTTTCTTGCCCCAAAGAAAACTCTTCACCAGTGTGGCGTTCAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGCAATTTCATAGATCTCAA</pcr_primer_p1>
		<pcr_primer_p2>CGATTCTGGAAGATGTGACTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ACGCAATTTCATAGATCTCAACCGAGTTTTTGAGCTTAATTTACCTCGATTCCTTGAAAGATTTCAAAACATTTTAACGGTAATTTCCTTTCCTATTATCACAAACATTTTATTAGTTGACACATTTTTGATATCTCTCACAGGAACCAAGATAATTCTTTTGAAGAAAATATCACTTCTAGATCTAAAAACCATTTGCCGATCTTCAAAGTTCGAACTCTATAGTCACATCTTCCAGAATCG</canonical_amplicon>
		<polymorphic_amplicon>ACGCAATTTCATAGATCTCAACCGAGTTTTTGAGCTTAATTTACCTCGATTCCTTGAAAGATTTCAAAACATTTTAACGGTAATTTCCTTTCCTATTATCACAAACATTTTATTAGTTGACACATTTTTGATATCTCTCACAGGAACCAAGATAATTCTTTTGAAGAAAATATCACWTCTAGATCTAAAAACCATTTGCCGATCTTCAAAGTTCGAACTCTATAGTCACATCTTCCAGAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33519</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>786290</contig_pos>
        <strand>+</strand>
        <context>ACCATCGACC[A/C]ACTCCAAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACGCCAACGTGTCCAGCACGAGGTCATCGAGTTGACCGCCACCATCGACC</left_flank>
        <right_flank>ACTCCAAAAGGATAAGCATACCGCCGAGAAGGCCGCCGAACGTTTCGAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACCATTCGGAATCTCTGAGCAATCGAAAGTTAGTATTTTGTGTCTGAACCTAATTTTTGACGTAAATTCTAAGATGTTTTTGTTTCTTTTTAAAAAAACCTGCTCAATTATTTCCACCTGATTTTTTTACACACTTCGTTGTCTGACATCACTTGTTGACACATCGACGAAAGTGTGTTCGTTAGTGTCTCTCTCCCACGCAATTTCATAGATCTCAACCGAGTTTTTGAGCTTAATTTACCTCGATTCCTTGAAAGATTTCAAAACATTTTAACGGTAATTTCCTTTCCTATTATCACAAACATTTTATTAGTTGACACATTTTTGATATCTCTCACAGGAACCAAGATAATTCTTTTGAAGAAAATATCACTTCTAGATCTAAAAACCATTTGCCGATCTTCAAAGTTCGAACTCTATAGTCACATCTTCCAGAATCGACCGCGAACGCCAACGTGTCCAGCACGAGGTCATCGAGTTGACCGCCACCATCGACCAACTCCAAAAGGATAAGCATACCGCCGAGAAGGCCGCCGAACGTTTCGAGGCTCAAGCCAACGAGCTCGCCAACAAGGTTGAGGACTTGGGCAAGCATGTCAACGATCTCGCCCAACAACGTCAACGCCTTCAGGCCGAGAACAATGATCTCCTCAAGGTAAACGTTTTGAACCTAAAGATCCTTCCATCTTATTTATAAAATATCATGTGCTATGGTGCCTTCTTATCTTTTTTTTCGAAACTTCCTATTCTTTTTTATTGAAAAAAAAGTAGTTCCCTCTACTCTCAGAGTGTGTGTGCAAATAGAGTACTCGAGATAAATGGGGCGCTTTTTTCTTGCCCCAAAGAAAACTCTTCACCAGTGTGGCGTTCAGTTATTGAATGAAAATAGGAGGGGTATTGAAAAACTAGCAGAAAAATAATTTTCAGGAGGTCCACGACCAGAAGGTCCAACTCGACAACCTTCAACACGTCAAGTACACCCTCGCCCAACAGCTTGA</canonical>
            <polymorphic>GAACCATTCGGAATCTCTGAGCAATCGAAAGTTAGTATTTTGTGTCTGAACCTAATTTTTGACGTAAATTCTAAGATGTTTTTGTTTCTTTTTAAAAAAACCTGCTCAATTATTTCCACCTGATTTTTTTACACACTTCGTTGTCTGACATCACTTGTTGACACATCGACGAAAGTGTGTTCGTTAGTGTCTCTCTCCCACGCAATTTCATAGATCTCAACCGAGTTTTTGAGCTTAATTTACCTCGATTCCTTGAAAGATTTCAAAACATTTTAACGGTAATTTCCTTTCCTATTATCACAAACATTTTATTAGTTGACACATTTTTGATATCTCTCACAGGAACCAAGATAATTCTTTTGAAGAAAATATCACTTCTAGATCTAAAAACCATTTGCCGATCTTCAAAGTTCGAACTCTATAGTCACATCTTCCAGAATCGACCGCGAACGCCAACGTGTCCAGCACGAGGTCATCGAGTTGACCGCCACCATCGACCMACTCCAAAAGGATAAGCATACCGCCGAGAAGGCCGCCGAACGTTTCGAGGCTCAAGCCAACGAGCTCGCCAACAAGGTTGAGGACTTGGGCAAGCATGTCAACGATCTCGCCCAACAACGTCAACGCCTTCAGGCCGAGAACAATGATCTCCTCAAGGTAAACGTTTTGAACCTAAAGATCCTTCCATCTTATTTATAAAATATCATGTGCTATGGTGCCTTCTTATCTTTTTTTTCGAAACTTCCTATTCTTTTTTATTGAAAAAAAAGTAGTTCCCTCTACTCTCAGAGTGTGTGTGCAAATAGAGTACTCGAGATAAATGGGGCGCTTTTTTCTTGCCCCAAAGAAAACTCTTCACCAGTGTGGCGTTCAGTTATTGAATGAAAATAGGAGGGGTATTGAAAAACTAGCAGAAAAATAATTTTCAGGAGGTCCACGACCAGAAGGTCCAACTCGACAACCTTCAACACGTCAAGTACACCCTCGCCCAACAGCTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGAACTCTATAGTCACATCTTC</pcr_primer_p1>
		<pcr_primer_p2>TTACCTTGAGGAGATCATTGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCGAACTCTATAGTCACATCTTCCAGAATCGACCGCGAACGCCAACGTGTCCAGCACGAGGTCATCGAGTTGACCGCCACCATCGACCAACTCCAAAAGGATAAGCATACCGCCGAGAAGGCCGCCGAACGTTTCGAGGCTCAAGCCAACGAGCTCGCCAACAAGGTTGAGGACTTGGGCAAGCATGTCAACGATCTCGCCCAACAACGTCAACGCCTTCAGGCCGAGAACAATGATCTCCTCAAGGTAA</canonical_amplicon>
		<polymorphic_amplicon>TTCGAACTCTATAGTCACATCTTCCAGAATCGACCGCGAACGCCAACGTGTCCAGCACGAGGTCATCGAGTTGACCGCCACCATCGACCMACTCCAAAAGGATAAGCATACCGCCGAGAAGGCCGCCGAACGTTTCGAGGCTCAAGCCAACGAGCTCGCCAACAAGGTTGAGGACTTGGGCAAGCATGTCAACGATCTCGCCCAACAACGTCAACGCCTTCAGGCCGAGAACAATGATCTCCTCAAGGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33520</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>786366</contig_pos>
        <strand>+</strand>
        <context>TCGCCAACAA[A/G]GKTGAGGACT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGAAGGCCGCCGAACGTTTCGAGGCTCAAGCCAACGAGCTCGCCAACAA</left_flank>
        <right_flank>GTTGAGGACTTGGGCAAGCATGTCAACGATCTCGCCCAACAACGTCAACG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTTTGTTTCTTTTTAAAAAAACCTGCTCAATTATTTCCACCTGATTTTTTTACACACTTCGTTGTCTGACATCACTTGTTGACACATCGACGAAAGTGTGTTCGTTAGTGTCTCTCTCCCACGCAATTTCATAGATCTCAACCGAGTTTTTGAGCTTAATTTACCTCGATTCCTTGAAAGATTTCAAAACATTTTAACGGTAATTTCCTTTCCTATTATCACAAACATTTTATTAGTTGACACATTTTTGATATCTCTCACAGGAACCAAGATAATTCTTTTGAAGAAAATATCACTTCTAGATCTAAAAACCATTTGCCGATCTTCAAAGTTCGAACTCTATAGTCACATCTTCCAGAATCGACCGCGAACGCCAACGTGTCCAGCACGAGGTCATCGAGTTGACCGCCACCATCGACCAACTCCAAAAGGATAAGCATACCGCCGAGAAGGCCGCCGAACGTTTCGAGGCTCAAGCCAACGAGCTCGCCAACAAGGTTGAGGACTTGGGCAAGCATGTCAACGATCTCGCCCAACAACGTCAACGCCTTCAGGCCGAGAACAATGATCTCCTCAAGGTAAACGTTTTGAACCTAAAGATCCTTCCATCTTATTTATAAAATATCATGTGCTATGGTGCCTTCTTATCTTTTTTTTCGAAACTTCCTATTCTTTTTTATTGAAAAAAAAGTAGTTCCCTCTACTCTCAGAGTGTGTGTGCAAATAGAGTACTCGAGATAAATGGGGCGCTTTTTTCTTGCCCCAAAGAAAACTCTTCACCAGTGTGGCGTTCAGTTATTGAATGAAAATAGGAGGGGTATTGAAAAACTAGCAGAAAAATAATTTTCAGGAGGTCCACGACCAGAAGGTCCAACTCGACAACCTTCAACACGTCAAGTACACCCTCGCCCAACAGCTTGAGGAGGCTAGACGCCGTCTTGAGGATGCCGAGCGCGTAAGTTCTTGAACTTTTTGTTTGGAACATTAGAATCAACAA</canonical>
            <polymorphic>TGTTTTTGTTTCTTTTTAAAAAAACCTGCTCAATTATTTCCACCTGATTTTTTTACACACTTCGTTGTCTGACATCACTTGTTGACACATCGACGAAAGTGTGTTCGTTAGTGTCTCTCTCCCACGCAATTTCATAGATCTCAACCGAGTTTTTGAGCTTAATTTACCTCGATTCCTTGAAAGATTTCAAAACATTTTAACGGTAATTTCCTTTCCTATTATCACAAACATTTTATTAGTTGACACATTTTTGATATCTCTCACAGGAACCAAGATAATTCTTTTGAAGAAAATATCACTTCTAGATCTAAAAACCATTTGCCGATCTTCAAAGTTCGAACTCTATAGTCACATCTTCCAGAATCGACCGCGAACGCCAACGTGTCCAGCACGAGGTCATCGAGTTGACCGCCACCATCGACCAACTCCAAAAGGATAAGCATACCGCCGAGAAGGCCGCCGAACGTTTCGAGGCTCAAGCCAACGAGCTCGCCAACAARGTTGAGGACTTGGGCAAGCATGTCAACGATCTCGCCCAACAACGTCAACGCCTTCAGGCCGAGAACAATGATCTCCTCAAGGTAAACGTTTTGAACCTAAAGATCCTTCCATCTTATTTATAAAATATCATGTGCTATGGTGCCTTCTTATCTTTTTTTTCGAAACTTCCTATTCTTTTTTATTGAAAAAAAAGTAGTTCCCTCTACTCTCAGAGTGTGTGTGCAAATAGAGTACTCGAGATAAATGGGGCGCTTTTTTCTTGCCCCAAAGAAAACTCTTCACCAGTGTGGCGTTCAGTTATTGAATGAAAATAGGAGGGGTATTGAAAAACTAGCAGAAAAATAATTTTCAGGAGGTCCACGACCAGAAGGTCCAACTCGACAACCTTCAACACGTCAAGTACACCCTCGCCCAACAGCTTGAGGAGGCTAGACGCCGTCTTGAGGATGCCGAGCGCGTAAGTTCTTGAACTTTTTGTTTGGAACATTAGAATCAACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGAACTCTATAGTCACATCTTC</pcr_primer_p1>
		<pcr_primer_p2>TTACCTTGAGGAGATCATTGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCGAACTCTATAGTCACATCTTCCAGAATCGACCGCGAACGCCAACGTGTCCAGCACGAGGTCATCGAGTTGACCGCCACCATCGACCAACTCCAAAAGGATAAGCATACCGCCGAGAAGGCCGCCGAACGTTTCGAGGCTCAAGCCAACGAGCTCGCCAACAAGGTTGAGGACTTGGGCAAGCATGTCAACGATCTCGCCCAACAACGTCAACGCCTTCAGGCCGAGAACAATGATCTCCTCAAGGTAA</canonical_amplicon>
		<polymorphic_amplicon>TTCGAACTCTATAGTCACATCTTCCAGAATCGACCGCGAACGCCAACGTGTCCAGCACGAGGTCATCGAGTTGACCGCCACCATCGACCAACTCCAAAAGGATAAGCATACCGCCGAGAAGGCCGCCGAACGTTTCGAGGCTCAAGCCAACGAGCTCGCCAACAARGTTGAGGACTTGGGCAAGCATGTCAACGATCTCGCCCAACAACGTCAACGCCTTCAGGCCGAGAACAATGATCTCCTCAAGGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33521</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>786368</contig_pos>
        <strand>+</strand>
        <context>GCCAACAARG[G/T]TGAGGACTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAGGCCGCCGAACGTTTCGAGGCTCAAGCCAACGAGCTCGCCAACAAGG</left_flank>
        <right_flank>TGAGGACTTGGGCAAGCATGTCAACGATCTCGCCCAACAACGTCAACGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGTTTCTTTTTAAAAAAACCTGCTCAATTATTTCCACCTGATTTTTTTACACACTTCGTTGTCTGACATCACTTGTTGACACATCGACGAAAGTGTGTTCGTTAGTGTCTCTCTCCCACGCAATTTCATAGATCTCAACCGAGTTTTTGAGCTTAATTTACCTCGATTCCTTGAAAGATTTCAAAACATTTTAACGGTAATTTCCTTTCCTATTATCACAAACATTTTATTAGTTGACACATTTTTGATATCTCTCACAGGAACCAAGATAATTCTTTTGAAGAAAATATCACTTCTAGATCTAAAAACCATTTGCCGATCTTCAAAGTTCGAACTCTATAGTCACATCTTCCAGAATCGACCGCGAACGCCAACGTGTCCAGCACGAGGTCATCGAGTTGACCGCCACCATCGACCAACTCCAAAAGGATAAGCATACCGCCGAGAAGGCCGCCGAACGTTTCGAGGCTCAAGCCAACGAGCTCGCCAACAAGGTTGAGGACTTGGGCAAGCATGTCAACGATCTCGCCCAACAACGTCAACGCCTTCAGGCCGAGAACAATGATCTCCTCAAGGTAAACGTTTTGAACCTAAAGATCCTTCCATCTTATTTATAAAATATCATGTGCTATGGTGCCTTCTTATCTTTTTTTTCGAAACTTCCTATTCTTTTTTATTGAAAAAAAAGTAGTTCCCTCTACTCTCAGAGTGTGTGTGCAAATAGAGTACTCGAGATAAATGGGGCGCTTTTTTCTTGCCCCAAAGAAAACTCTTCACCAGTGTGGCGTTCAGTTATTGAATGAAAATAGGAGGGGTATTGAAAAACTAGCAGAAAAATAATTTTCAGGAGGTCCACGACCAGAAGGTCCAACTCGACAACCTTCAACACGTCAAGTACACCCTCGCCCAACAGCTTGAGGAGGCTAGACGCCGTCTTGAGGATGCCGAGCGCGTAAGTTCTTGAACTTTTTGTTTGGAACATTAGAATCAACAAAA</canonical>
            <polymorphic>TTTTTGTTTCTTTTTAAAAAAACCTGCTCAATTATTTCCACCTGATTTTTTTACACACTTCGTTGTCTGACATCACTTGTTGACACATCGACGAAAGTGTGTTCGTTAGTGTCTCTCTCCCACGCAATTTCATAGATCTCAACCGAGTTTTTGAGCTTAATTTACCTCGATTCCTTGAAAGATTTCAAAACATTTTAACGGTAATTTCCTTTCCTATTATCACAAACATTTTATTAGTTGACACATTTTTGATATCTCTCACAGGAACCAAGATAATTCTTTTGAAGAAAATATCACTTCTAGATCTAAAAACCATTTGCCGATCTTCAAAGTTCGAACTCTATAGTCACATCTTCCAGAATCGACCGCGAACGCCAACGTGTCCAGCACGAGGTCATCGAGTTGACCGCCACCATCGACCAACTCCAAAAGGATAAGCATACCGCCGAGAAGGCCGCCGAACGTTTCGAGGCTCAAGCCAACGAGCTCGCCAACAAGGKTGAGGACTTGGGCAAGCATGTCAACGATCTCGCCCAACAACGTCAACGCCTTCAGGCCGAGAACAATGATCTCCTCAAGGTAAACGTTTTGAACCTAAAGATCCTTCCATCTTATTTATAAAATATCATGTGCTATGGTGCCTTCTTATCTTTTTTTTCGAAACTTCCTATTCTTTTTTATTGAAAAAAAAGTAGTTCCCTCTACTCTCAGAGTGTGTGTGCAAATAGAGTACTCGAGATAAATGGGGCGCTTTTTTCTTGCCCCAAAGAAAACTCTTCACCAGTGTGGCGTTCAGTTATTGAATGAAAATAGGAGGGGTATTGAAAAACTAGCAGAAAAATAATTTTCAGGAGGTCCACGACCAGAAGGTCCAACTCGACAACCTTCAACACGTCAAGTACACCCTCGCCCAACAGCTTGAGGAGGCTAGACGCCGTCTTGAGGATGCCGAGCGCGTAAGTTCTTGAACTTTTTGTTTGGAACATTAGAATCAACAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGAACTCTATAGTCACATCTTC</pcr_primer_p1>
		<pcr_primer_p2>TTACCTTGAGGAGATCATTGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCGAACTCTATAGTCACATCTTCCAGAATCGACCGCGAACGCCAACGTGTCCAGCACGAGGTCATCGAGTTGACCGCCACCATCGACCAACTCCAAAAGGATAAGCATACCGCCGAGAAGGCCGCCGAACGTTTCGAGGCTCAAGCCAACGAGCTCGCCAACAAGGTTGAGGACTTGGGCAAGCATGTCAACGATCTCGCCCAACAACGTCAACGCCTTCAGGCCGAGAACAATGATCTCCTCAAGGTAA</canonical_amplicon>
		<polymorphic_amplicon>TTCGAACTCTATAGTCACATCTTCCAGAATCGACCGCGAACGCCAACGTGTCCAGCACGAGGTCATCGAGTTGACCGCCACCATCGACCAACTCCAAAAGGATAAGCATACCGCCGAGAAGGCCGCCGAACGTTTCGAGGCTCAAGCCAACGAGCTCGCCAACAAGGKTGAGGACTTGGGCAAGCATGTCAACGATCTCGCCCAACAACGTCAACGCCTTCAGGCCGAGAACAATGATCTCCTCAAGGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33522</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>882226</contig_pos>
        <strand></strand>
        <context>gccgagctag[G/C]ttttcataat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CCTTTCGTCTCCGCCCCCTCCCCGTATAACACGCCTAGCTGCCGAGCTAG</left_flank>
        <right_flank>TTTTCATAATTAAGCCGTGTAAGAACCTCCAAAAAATCTGCCGAGGTGGC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGGGGGATTCTATTAGAGTCAACTTTGACCAACTTTCTCTATGTTCCTGTAAAAGATATCCATAAATTATTGACAGCAAAAATGTCCACTTTAATATCAGAAACAATCCATTAGTTTTTAATATCAGAAACAATCCATCAATTTTTTAAACGCGATGAAAATTTTATATATTTTATTAAAATTCCGCGTGCCAAAAAGTGTATTTTTATATTTAAATTTTCCACCAAAATATCGACGTAAAAACCCACTACCCTAGATCAGTGTGTGCTATCGGTACGGTTTTGGTGAATTTACCGGTAATTTTACCGGTAACTTACCGGTAATTTACCGGTAAATTTACCAAAAACTACCGGTAATTTCTAGGATAATTTTTGCTTTTTTTCAAAATTTGGAACCGCGACGTTTTAGAACCGCGACATTTTAGAGCTGCACTACTAATGCCGCCACCCTTTCGTCTCCGCCCCCTCCCCGTATAACACGCCTAGCTGCCGAGCTAGGTTTTCATAATTAAGCCGTGTAAGAACCTCCAAAAAATCTGCCGAGGTGGCTTCCACCACAGGACACCAAGTAACCCATATGTGCCGCCTACTTTATGTGCTGAAGTAGATATCATTGTGTTTAGCTTGAAGAGAGCGTTCGAATGGTGGTAAGATAAACTAGCGTAAAAATGGACCGAGTTATGATGAATGGAAGTTTTAGTGGCTCGGGACGTCTTCAGGATTCTCGGAGACGAAAGGGTCGTTTCTCGAGAAATTTCGAGGAATCCATTTCTCGAAAAATTCCTCGAGGAATTCCTCGAAAATTTTTTGTCGAAAATTTCTCGAAAATTTCTCGAAAAAGGCATTTCTCGAGAAATTTTTTTCGAAAAGACACACTGGTGTAGTCCTCGAGGAAAATAAAAATTTTACCGAAAATTTACCGGTAACTTACCGGTAATTTACCGGTAAAATACCGGTAAATTTTCGGTAGTTTTCAAATTTACCGGTAGGTTAATTTCG</canonical>
            <polymorphic>GATGGGGGATTCTATTAGAGTCAACTTTGACCAACTTTCTCTATGTTCCTGTAAAAGATATCCATAAATTATTGACAGCAAAAATGTCCACTTTAATATCAGAAACAATCCATTAGTTTTTAATATCAGAAACAATCCATCAATTTTTTAAACGCGATGAAAATTTTATATATTTTATTAAAATTCCGCGTGCCAAAAAGTGTATTTTTATATTTAAATTTTCCACCAAAATATCGACGTAAAAACCCACTACCCTAGATCAGTGTGTGCTATCGGTACGGTTTTGGTGAATTTACCGGTAATTTTACCGGTAACTTACCGGTAATTTACCGGTAAATTTACCAAAAACTACCGGTAATTTCTAGGATAATTTTTGCTTTTTTTCAAAATTTGGAACCGCGACGTTTTAGAACCGCGACATTTTAGAGCTGCACTACTAATGCCGCCACCCTTTCGTCTCCGCCCCCTCCCCGTATAACACGCCTAGCTGCCGAGCTAGSTTTTCATAATTAAGCCGTGTAAGAACCTCCAAAAAATCTGCCGAGGTGGCTTCCACCACAGGACACCAAGTAACCCATATGTGCCGCCTACTTTATGTGCTGAAGTAGATATCATTGTGTTTAGCTTGAAGAGAGCGTTCGAATGGTGGTAAGATAAACTAGCGTAAAAATGGACCGAGTTATGATGAATGGAAGTTTTAGTGGCTCGGGACGTCTTCAGGATTCTCGGAGACGAAAGGGTCGTTTCTCGAGAAATTTCGAGGAATCCATTTCTCGAAAAATTCCTCGAGGAATTCCTCGAAAATTTTTTGTCGAAAATTTCTCGAAAATTTCTCGAAAAAGGCATTTCTCGAGAAATTTTTTTCGAAAAGACACACTGGTGTAGTCCTCGAGGAAAATAAAAATTTTACCGAAAATTTACCGGTAACTTACCGGTAATTTACCGGTAAAATACCGGTAAATTTTCGGTAGTTTTCAAATTTACCGGTAGGTTAATTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCGACGTAAAAACCCACTAC</pcr_primer_p1>
		<pcr_primer_p2>CAGTGTGTGACTACCGATTG</pcr_primer_p2>
		<pcr_amplicon_size>849</pcr_amplicon_size>
		<canonical_amplicon>TATCGACGTAAAAACCCACTACCCTAGATCAGTGTGTGCTATCGGTACGGTTTTGGTGAATTTACCGGTAATTTTACCGGTAACTTACCGGTAATTTACCGGTAAATTTACCAAAAACTACCGGTAATTTCTAGGATAATTTTTGCTTTTTTTCAAAATTTGGAACCGCGACGTTTTAGAACCGCGACATTTTAGAGCTGCACTACTAATGCCGCCACCCTTTCGTCTCCGCCCCCTCCCCGTATAACACGCCTAGCTGCCGAGCTAGGTTTTCATAATTAAGCCGTG</canonical_amplicon>
		<polymorphic_amplicon>TATCGACGTAAAAACCCACTACCCTAGATCAGTGTGTGCTATCGGTACGGTTTTGGTGAATTTACCGGTAATTTTACCGGTAACTTACCGGTAATTTACCGGTAAATTTACCAAAAACTACCGGTAATTTCTAGGATAATTTTTGCTTTTTTTCAAAATTTGGAACCGCGACGTTTTAGAACCGCGACATTTTAGAGCTGCACTACTAATGCCGCCACCCTTTCGTCTCCGCCCCCTCCCCGTATAACACGCCTAGCTGCCGAGCTAGSTTTTCATAATTAAGCCGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33523</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>882399</contig_pos>
        <strand></strand>
        <context>cgtaaaaatg[G/A]accgagttat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGCTTGAAGAGAGCGTTCGAATGGTGGTAAGATAAACTAGCGTAAAAATG</left_flank>
        <right_flank>ACCGAGTTATGATGAATGGAAGTTTTAGTGGCTCGGGACGTCTTCAGGAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTATTAAAATTCCGCGTGCCAAAAAGTGTATTTTTATATTTAAATTTTCCACCAAAATATCGACGTAAAAACCCACTACCCTAGATCAGTGTGTGCTATCGGTACGGTTTTGGTGAATTTACCGGTAATTTTACCGGTAACTTACCGGTAATTTACCGGTAAATTTACCAAAAACTACCGGTAATTTCTAGGATAATTTTTGCTTTTTTTCAAAATTTGGAACCGCGACGTTTTAGAACCGCGACATTTTAGAGCTGCACTACTAATGCCGCCACCCTTTCGTCTCCGCCCCCTCCCCGTATAACACGCCTAGCTGCCGAGCTAGGTTTTCATAATTAAGCCGTGTAAGAACCTCCAAAAAATCTGCCGAGGTGGCTTCCACCACAGGACACCAAGTAACCCATATGTGCCGCCTACTTTATGTGCTGAAGTAGATATCATTGTGTTTAGCTTGAAGAGAGCGTTCGAATGGTGGTAAGATAAACTAGCGTAAAAATGGACCGAGTTATGATGAATGGAAGTTTTAGTGGCTCGGGACGTCTTCAGGATTCTCGGAGACGAAAGGGTCGTTTCTCGAGAAATTTCGAGGAATCCATTTCTCGAAAAATTCCTCGAGGAATTCCTCGAAAATTTTTTGTCGAAAATTTCTCGAAAATTTCTCGAAAAAGGCATTTCTCGAGAAATTTTTTTCGAAAAGACACACTGGTGTAGTCCTCGAGGAAAATAAAAATTTTACCGAAAATTTACCGGTAACTTACCGGTAATTTACCGGTAAAATACCGGTAAATTTTCGGTAGTTTTCAAATTTACCGGTAGGTTAATTTCGGTAAATTTTTACCGGTAAATTACCGGTAAAATTACCAAAAAAGCCGTTACCGGTAAGTGACAATCGGTAGTCACACACTGCCCTAGATGGCCCACTGACCTCAGGAAGAATACTATAAACGAAGAGTGAATCGAAGGGAAGAATCAGTTCTCCCCTTCTCTGCGCTCCAGAGA</canonical>
            <polymorphic>TTTATTAAAATTCCGCGTGCCAAAAAGTGTATTTTTATATTTAAATTTTCCACCAAAATATCGACGTAAAAACCCACTACCCTAGATCAGTGTGTGCTATCGGTACGGTTTTGGTGAATTTACCGGTAATTTTACCGGTAACTTACCGGTAATTTACCGGTAAATTTACCAAAAACTACCGGTAATTTCTAGGATAATTTTTGCTTTTTTTCAAAATTTGGAACCGCGACGTTTTAGAACCGCGACATTTTAGAGCTGCACTACTAATGCCGCCACCCTTTCGTCTCCGCCCCCTCCCCGTATAACACGCCTAGCTGCCGAGCTAGGTTTTCATAATTAAGCCGTGTAAGAACCTCCAAAAAATCTGCCGAGGTGGCTTCCACCACAGGACACCAAGTAACCCATATGTGCCGCCTACTTTATGTGCTGAAGTAGATATCATTGTGTTTAGCTTGAAGAGAGCGTTCGAATGGTGGTAAGATAAACTAGCGTAAAAATGRACCGAGTTATGATGAATGGAAGTTTTAGTGGCTCGGGACGTCTTCAGGATTCTCGGAGACGAAAGGGTCGTTTCTCGAGAAATTTCGAGGAATCCATTTCTCGAAAAATTCCTCGAGGAATTCCTCGAAAATTTTTTGTCGAAAATTTCTCGAAAATTTCTCGAAAAAGGCATTTCTCGAGAAATTTTTTTCGAAAAGACACACTGGTGTAGTCCTCGAGGAAAATAAAAATTTTACCGAAAATTTACCGGTAACTTACCGGTAATTTACCGGTAAAATACCGGTAAATTTTCGGTAGTTTTCAAATTTACCGGTAGGTTAATTTCGGTAAATTTTTACCGGTAAATTACCGGTAAAATTACCAAAAAAGCCGTTACCGGTAAGTGACAATCGGTAGTCACACACTGCCCTAGATGGCCCACTGACCTCAGGAAGAATACTATAAACGAAGAGTGAATCGAAGGGAAGAATCAGTTCTCCCCTTCTCTGCGCTCCAGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>499 417 84</canonical_bands>
                <polymorphic_bands>916 84</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCGACGTAAAAACCCACTAC</pcr_primer_p1>
		<pcr_primer_p2>CAGTGTGTGACTACCGATTG</pcr_primer_p2>
		<pcr_amplicon_size>849</pcr_amplicon_size>
		<canonical_amplicon>TATCGACGTAAAAACCCACTACCCTAGATCAGTGTGTGCTATCGGTACGGTTTTGGTGAATTTACCGGTAATTTTACCGGTAACTTACCGGTAATTTACCGGTAAATTTACCAAAAACTACCGGTAATTTCTAGGATAATTTTTGCTTTTTTTCAAAATTTGGAACCGCGACGTTTTAGAACCGCGACATTTTAGAGCTGCACTACTAATGCCGCCACCCTTTCGTCTCCGCCCCCTCCCCGTATAACACGCCTAGCTGCCGAGCTAGGTTTTCATAATTAAGCCGTGTAAGAACCTCCAAAAAATCTGCCGAGGTGGCTTCCACCACAGGACACCAAGTAACCCATATGTGCCGCCTACTTTATGTGCTGAAGTAGATATCATTGTGTTTAGCTTGAAGAGAGCGTTCGAATGGTGGTAAGATAAACTAGCGTAAAAATGGACCGAGTTATGATGAATGGAAGTTTTAGTGGCTCGGGACGTCTTCAGGATTCTCGGAGACGAAAGGGTCGTTTCTCGAGAAATTTCGAGGAATCCATTTCTCGAAAAATTCCTCGAGGAATTCCTCGAAAATTTTTTGTCGAAAATTTCTCGAAAATTTCTCGAAAAAGGCATTTCTCGAGAAATTTTTTTCGAAAAGACACACTGGTGTAGTCCTCGAGGAAAATAAAAATTTTACCGAAAATTTACCGGTAACTTACCGGTAATTTACCGGTAAAATACCGGTAAATTTTCGGTAGTTTTCAAATTTACCGGTAGGTTAATTTCGGTAAATTTTTACCGGTAAATTACCGGTAAAATTACCAAAAAAGCCGTTACCGGTAAGTGACAATCGGTAGTCACACACTG</canonical_amplicon>
		<polymorphic_amplicon>TATCGACGTAAAAACCCACTACCCTAGATCAGTGTGTGCTATCGGTACGGTTTTGGTGAATTTACCGGTAATTTTACCGGTAACTTACCGGTAATTTACCGGTAAATTTACCAAAAACTACCGGTAATTTCTAGGATAATTTTTGCTTTTTTTCAAAATTTGGAACCGCGACGTTTTAGAACCGCGACATTTTAGAGCTGCACTACTAATGCCGCCACCCTTTCGTCTCCGCCCCCTCCCCGTATAACACGCCTAGCTGCCGAGCTAGGTTTTCATAATTAAGCCGTGTAAGAACCTCCAAAAAATCTGCCGAGGTGGCTTCCACCACAGGACACCAAGTAACCCATATGTGCCGCCTACTTTATGTGCTGAAGTAGATATCATTGTGTTTAGCTTGAAGAGAGCGTTCGAATGGTGGTAAGATAAACTAGCGTAAAAATGRACCGAGTTATGATGAATGGAAGTTTTAGTGGCTCGGGACGTCTTCAGGATTCTCGGAGACGAAAGGGTCGTTTCTCGAGAAATTTCGAGGAATCCATTTCTCGAAAAATTCCTCGAGGAATTCCTCGAAAATTTTTTGTCGAAAATTTCTCGAAAATTTCTCGAAAAAGGCATTTCTCGAGAAATTTTTTTCGAAAAGACACACTGGTGTAGTCCTCGAGGAAAATAAAAATTTTACCGAAAATTTACCGGTAACTTACCGGTAATTTACCGGTAAAATACCGGTAAATTTTCGGTAGTTTTCAAATTTACCGGTAGGTTAATTTCGGTAAATTTTTACCGGTAAATTACCGGTAAAATTACCAAAAAAGCCGTTACCGGTAAGTGACAATCGGTAGTCACACACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33524</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>882655</contig_pos>
        <strand></strand>
        <context>taccggtaac[T/G]taccggtaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GGTGTAGTCCTCGAGGAAAATAAAAATTTTACCGAAAATTTACCGGTAAC</left_flank>
        <right_flank>TACCGGTAATTTACCGGTAAAATACCGGTAAATTTTCGGTAGTTTTCAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCACTACTAATGCCGCCACCCTTTCGTCTCCGCCCCCTCCCCGTATAACACGCCTAGCTGCCGAGCTAGGTTTTCATAATTAAGCCGTGTAAGAACCTCCAAAAAATCTGCCGAGGTGGCTTCCACCACAGGACACCAAGTAACCCATATGTGCCGCCTACTTTATGTGCTGAAGTAGATATCATTGTGTTTAGCTTGAAGAGAGCGTTCGAATGGTGGTAAGATAAACTAGCGTAAAAATGGACCGAGTTATGATGAATGGAAGTTTTAGTGGCTCGGGACGTCTTCAGGATTCTCGGAGACGAAAGGGTCGTTTCTCGAGAAATTTCGAGGAATCCATTTCTCGAAAAATTCCTCGAGGAATTCCTCGAAAATTTTTTGTCGAAAATTTCTCGAAAATTTCTCGAAAAAGGCATTTCTCGAGAAATTTTTTTCGAAAAGACACACTGGTGTAGTCCTCGAGGAAAATAAAAATTTTACCGAAAATTTACCGGTAACTTACCGGTAATTTACCGGTAAAATACCGGTAAATTTTCGGTAGTTTTCAAATTTACCGGTAGGTTAATTTCGGTAAATTTTTACCGGTAAATTACCGGTAAAATTACCAAAAAAGCCGTTACCGGTAAGTGACAATCGGTAGTCACACACTGCCCTAGATGGCCCACTGACCTCAGGAAGAATACTATAAACGAAGAGTGAATCGAAGGGAAGAATCAGTTCTCCCCTTCTCTGCGCTCCAGAGAAGGGGGCCCGGGAGGGATCCGGAACCCGGAGCCCAGGTCCTGGTGCCTGGGTCCTGGTGCCTGTTTTCTGAAGCCCGGGTCCTGGGGCCTGGGTCCCGGTGCCCGGGTCTTGGAGCGCGGGTGCTGATGCCCGGGTCCTGGTTCCCGGGTCCTGGAGCTGGAGCCAGAAGCATTCAATGAAGGATATCAGAAGCAAGATCAAATGCTGGTGGAGGATCTAACACCAATTCTGATGTTAAAGATGATTTTTTTCAAT</canonical>
            <polymorphic>TGCACTACTAATGCCGCCACCCTTTCGTCTCCGCCCCCTCCCCGTATAACACGCCTAGCTGCCGAGCTAGGTTTTCATAATTAAGCCGTGTAAGAACCTCCAAAAAATCTGCCGAGGTGGCTTCCACCACAGGACACCAAGTAACCCATATGTGCCGCCTACTTTATGTGCTGAAGTAGATATCATTGTGTTTAGCTTGAAGAGAGCGTTCGAATGGTGGTAAGATAAACTAGCGTAAAAATGGACCGAGTTATGATGAATGGAAGTTTTAGTGGCTCGGGACGTCTTCAGGATTCTCGGAGACGAAAGGGTCGTTTCTCGAGAAATTTCGAGGAATCCATTTCTCGAAAAATTCCTCGAGGAATTCCTCGAAAATTTTTTGTCGAAAATTTCTCGAAAATTTCTCGAAAAAGGCATTTCTCGAGAAATTTTTTTCGAAAAGACACACTGGTGTAGTCCTCGAGGAAAATAAAAATTTTACCGAAAATTTACCGGTAACKTACCGGTAATTTACCGGTAAAATACCGGTAAATTTTCGGTAGTTTTCAAATTTACCGGTAGGTTAATTTCGGTAAATTTTTACCGGTAAATTACCGGTAAAATTACCAAAAAAGCCGTTACCGGTAAGTGACAATCGGTAGTCACACACTGCCCTAGATGGCCCACTGACCTCAGGAAGAATACTATAAACGAAGAGTGAATCGAAGGGAAGAATCAGTTCTCCCCTTCTCTGCGCTCCAGAGAAGGGGGCCCGGGAGGGATCCGGAACCCGGAGCCCAGGTCCTGGTGCCTGGGTCCTGGTGCCTGTTTTCTGAAGCCCGGGTCCTGGGGCCTGGGTCCCGGTGCCCGGGTCTTGGAGCGCGGGTGCTGATGCCCGGGTCCTGGTTCCCGGGTCCTGGAGCTGGAGCCAGAAGCATTCAATGAAGGATATCAGAAGCAAGATCAAATGCTGGTGGAGGATCTAACACCAATTCTGATGTTAAAGATGATTTTTTTCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCGACGTAAAAACCCACTAC</pcr_primer_p1>
		<pcr_primer_p2>CAGTGTGTGACTACCGATTG</pcr_primer_p2>
		<pcr_amplicon_size>849</pcr_amplicon_size>
		<canonical_amplicon>CTTACCGGTAATTTACCGGTAAAATACCGGTAAATTTTCGGTAGTTTTCAAATTTACCGGTAGGTTAATTTCGGTAAATTTTTACCGGTAAATTACCGGTAAAATTACCAAAAAAGCCGTTACCGGTAAGTGACAATCGGTAGTCACACACTG</canonical_amplicon>
		<polymorphic_amplicon>CKTACCGGTAATTTACCGGTAAAATACCGGTAAATTTTCGGTAGTTTTCAAATTTACCGGTAGGTTAATTTCGGTAAATTTTTACCGGTAAATTACCGGTAAAATTACCAAAAAAGCCGTTACCGGTAAGTGACAATCGGTAGTCACACACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33525</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>893962</contig_pos>
        <strand>+</strand>
        <context>AAATATTCAA[C/T]ATAAAGAGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGAGCTCATCTCCGAGCTTTTTTTCACTATATTGCGAGAAATATTCAA</left_flank>
        <right_flank>ATAAAGAGGGAGAGAAAAGAGCGACTCCAATTGTTACACCTTTGCCAGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGGTATCCCGACCATTTCAGATAAAATGATGTAACGAACAGAGAAAAACTTCAAATTCTGGATTTCTTATTCTAATTAGATAGCAACAAAAATGAAAAAATTCAAAATTCAAACAAGCAAAATGTAATCAAAGTCCACAAAGAGATCTCAATGTCGCACGAACATCTCCGTTGGTTTCGATGAGTTTGGCACGGACGGTGCCTTCTGGAAGCTCCAATTCCTTCATCACCAACTGCAAATCCTCCTTTTTGATGTTGATTTTGGGCCGAGCTGGTGCTGATGAGTTGAACAAGTTGCCGAGCGCGTCGGCGCTCAGCTTCGTGTCATCAGTGTCTTCGCGAGTGTCCGACACCTGGAAAATACTGATTTTAGGGAAATTTAAGCAGGAAAAATCAATGAAATCCTACTTCTGGAATATAATGTTCATCGAAATCGCTTTCTTCGCCGTTTGAGCTCATCTCCGAGCTTTTTTTCACTATATTGCGAGAAATATTCAATATAAAGAGGGAGAGAAAAGAGCGACTCCAATTGTTACACCTTTGCCAGCGGGGAGAAGAACAAAATCTATTTGCCCTCTTGGATAGGGTTCAGACGGTCAGACAGAGAAAAAAGAGAGCCTAGTCATCATCGCGCAATTGGTTTTCAACAAAATACTCACTTTCGACAACTCCTCGCTTCCCCAGTTGTGCTTGTCCACTTGCTGCTTCTCGTCATCGTCGGCCATTTTTTCTGGAAATTTGTTTTATACTTTCTCGGTTTTGCGGGTTCAAATCTTTATTTGAAAGAGATAAATTGGGATTTTGAAGTGAGAAAGTGGTTGAAATTCTCGAAAAATTCGGGTCAAAATATTCTGTTTTTTTTTCCTCACACAAACGACACTCCGCCATCACGTGTGCGCGCGTTGTTTACCACGAGCGCGGCAGCTCAAATTTAGGTTTTCGCATCGATCTTTTGTGACACCTTTGAATTATTGATGGTCCGTCGAGTCATTTAGCCTT</canonical>
            <polymorphic>GACGGTATCCCGACCATTTCAGATAAAATGATGTAACGAACAGAGAAAAACTTCAAATTCTGGATTTCTTATTCTAATTAGATAGCAACAAAAATGAAAAAATTCAAAATTCAAACAAGCAAAATGTAATCAAAGTCCACAAAGAGATCTCAATGTCGCACGAACATCTCCGTTGGTTTCGATGAGTTTGGCACGGACGGTGCCTTCTGGAAGCTCCAATTCCTTCATCACCAACTGCAAATCCTCCTTTTTGATGTTGATTTTGGGCCGAGCTGGTGCTGATGAGTTGAACAAGTTGCCGAGCGCGTCGGCGCTCAGCTTCGTGTCATCAGTGTCTTCGCGAGTGTCCGACACCTGGAAAATACTGATTTTAGGGAAATTTAAGCAGGAAAAATCAATGAAATCCTACTTCTGGAATATAATGTTCATCGAAATCGCTTTCTTCGCCGTTTGAGCTCATCTCCGAGCTTTTTTTCACTATATTGCGAGAAATATTCAAYATAAAGAGGGAGAGAAAAGAGCGACTCCAATTGTTACACCTTTGCCAGCGGGGAGAAGAACAAAATCTATTTGCCCTCTTGGATAGGGTTCAGACGGTCAGACAGAGAAAAAAGAGAGCCTAGTCATCATCGCGCAATTGGTTTTCAACAAAATACTCACTTTCGACAACTCCTCGCTTCCCCAGTTGTGCTTGTCCACTTGCTGCTTCTCGTCATCGTCGGCCATTTTTTCTGGAAATTTGTTTTATACTTTCTCGGTTTTGCGGGTTCAAATCTTTATTTGAAAGAGATAAATTGGGATTTTGAAGTGAGAAAGTGGTTGAAATTCTCGAAAAATTCGGGTCAAAATATTCTGTTTTTTTTTCCTCACACAAACGACACTCCGCCATCACGTGTGCGCGCGTTGTTTACCACGAGCGCGGCAGCTCAAATTTAGGTTTTCGCATCGATCTTTTGTGACACCTTTGAATTATTGATGGTCCGTCGAGTCATTTAGCCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAAAAATCAATGAAATCCTAC</pcr_primer_p1>
		<pcr_primer_p2>GATGATGACTAGGCTCTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGGAAAAATCAATGAAATCCTACTTCTGGAATATAATGTTCATCGAAATCGCTTTCTTCGCCGTTTGAGCTCATCTCCGAGCTTTTTTTCACTATATTGCGAGAAATATTCAATATAAAGAGGGAGAGAAAAGAGCGACTCCAATTGTTACACCTTTGCCAGCGGGGAGAAGAACAAAATCTATTTGCCCTCTTGGATAGGGTTCAGACGGTCAGACAGAGAAAAAAGAGAGCCTAGTCATCATC</canonical_amplicon>
		<polymorphic_amplicon>AGGAAAAATCAATGAAATCCTACTTCTGGAATATAATGTTCATCGAAATCGCTTTCTTCGCCGTTTGAGCTCATCTCCGAGCTTTTTTTCACTATATTGCGAGAAATATTCAAYATAAAGAGGGAGAGAAAAGAGCGACTCCAATTGTTACACCTTTGCCAGCGGGGAGAAGAACAAAATCTATTTGCCCTCTTGGATAGGGTTCAGACGGTCAGACAGAGAAAAAAGAGAGCCTAGTCATCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33526</snp_id>
        <super_contig>c008300802.Contig4</super_contig>
        <contig_pos>894050</contig_pos>
        <strand>+</strand>
        <context>CTTGGATAGG[G/T]TTCAGACGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACCTTTGCCAGCGGGGAGAAGAACAAAATCTATTTGCCCTCTTGGATAGG</left_flank>
        <right_flank>TTCAGACGGTCAGACAGAGAAAAAAGAGAGCCTAGTCATCATCGCGCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAATGAAAAAATTCAAAATTCAAACAAGCAAAATGTAATCAAAGTCCACAAAGAGATCTCAATGTCGCACGAACATCTCCGTTGGTTTCGATGAGTTTGGCACGGACGGTGCCTTCTGGAAGCTCCAATTCCTTCATCACCAACTGCAAATCCTCCTTTTTGATGTTGATTTTGGGCCGAGCTGGTGCTGATGAGTTGAACAAGTTGCCGAGCGCGTCGGCGCTCAGCTTCGTGTCATCAGTGTCTTCGCGAGTGTCCGACACCTGGAAAATACTGATTTTAGGGAAATTTAAGCAGGAAAAATCAATGAAATCCTACTTCTGGAATATAATGTTCATCGAAATCGCTTTCTTCGCCGTTTGAGCTCATCTCCGAGCTTTTTTTCACTATATTGCGAGAAATATTCAATATAAAGAGGGAGAGAAAAGAGCGACTCCAATTGTTACACCTTTGCCAGCGGGGAGAAGAACAAAATCTATTTGCCCTCTTGGATAGGGTTCAGACGGTCAGACAGAGAAAAAAGAGAGCCTAGTCATCATCGCGCAATTGGTTTTCAACAAAATACTCACTTTCGACAACTCCTCGCTTCCCCAGTTGTGCTTGTCCACTTGCTGCTTCTCGTCATCGTCGGCCATTTTTTCTGGAAATTTGTTTTATACTTTCTCGGTTTTGCGGGTTCAAATCTTTATTTGAAAGAGATAAATTGGGATTTTGAAGTGAGAAAGTGGTTGAAATTCTCGAAAAATTCGGGTCAAAATATTCTGTTTTTTTTTCCTCACACAAACGACACTCCGCCATCACGTGTGCGCGCGTTGTTTACCACGAGCGCGGCAGCTCAAATTTAGGTTTTCGCATCGATCTTTTGTGACACCTTTGAATTATTGATGGTCCGTCGAGTCATTTAGCCTTTTTATTCTATTTTTACAGAACACATCCTTTAAAATCACGATATTTTGTATTTTAGAGAAAGAAACGTCGAGAAGCGCATCTCTATGCG</canonical>
            <polymorphic>CAAAAATGAAAAAATTCAAAATTCAAACAAGCAAAATGTAATCAAAGTCCACAAAGAGATCTCAATGTCGCACGAACATCTCCGTTGGTTTCGATGAGTTTGGCACGGACGGTGCCTTCTGGAAGCTCCAATTCCTTCATCACCAACTGCAAATCCTCCTTTTTGATGTTGATTTTGGGCCGAGCTGGTGCTGATGAGTTGAACAAGTTGCCGAGCGCGTCGGCGCTCAGCTTCGTGTCATCAGTGTCTTCGCGAGTGTCCGACACCTGGAAAATACTGATTTTAGGGAAATTTAAGCAGGAAAAATCAATGAAATCCTACTTCTGGAATATAATGTTCATCGAAATCGCTTTCTTCGCCGTTTGAGCTCATCTCCGAGCTTTTTTTCACTATATTGCGAGAAATATTCAATATAAAGAGGGAGAGAAAAGAGCGACTCCAATTGTTACACCTTTGCCAGCGGGGAGAAGAACAAAATCTATTTGCCCTCTTGGATAGGKTTCAGACGGTCAGACAGAGAAAAAAGAGAGCCTAGTCATCATCGCGCAATTGGTTTTCAACAAAATACTCACTTTCGACAACTCCTCGCTTCCCCAGTTGTGCTTGTCCACTTGCTGCTTCTCGTCATCGTCGGCCATTTTTTCTGGAAATTTGTTTTATACTTTCTCGGTTTTGCGGGTTCAAATCTTTATTTGAAAGAGATAAATTGGGATTTTGAAGTGAGAAAGTGGTTGAAATTCTCGAAAAATTCGGGTCAAAATATTCTGTTTTTTTTTCCTCACACAAACGACACTCCGCCATCACGTGTGCGCGCGTTGTTTACCACGAGCGCGGCAGCTCAAATTTAGGTTTTCGCATCGATCTTTTGTGACACCTTTGAATTATTGATGGTCCGTCGAGTCATTTAGCCTTTTTATTCTATTTTTACAGAACACATCCTTTAAAATCACGATATTTTGTATTTTAGAGAAAGAAACGTCGAGAAGCGCATCTCTATGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAGCGACTCCAATTGTTAC</pcr_primer_p1>
		<pcr_primer_p2>CAAAACCGAGAAAGTATAAAACA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAGAGCGACTCCAATTGTTACACCTTTGCCAGCGGGGAGAAGAACAAAATCTATTTGCCCTCTTGGATAGGGTTCAGACGGTCAGACAGAGAAAAAAGAGAGCCTAGTCATCATCGCGCAATTGGTTTTCAACAAAATACTCACTTTCGACAACTCCTCGCTTCCCCAGTTGTGCTTGTCCACTTGCTGCTTCTCGTCATCGTCGGCCATTTTTTCTGGAAATTTGTTTTATACTTTCTCGGTTTTG</canonical_amplicon>
		<polymorphic_amplicon>AAGAGCGACTCCAATTGTTACACCTTTGCCAGCGGGGAGAAGAACAAAATCTATTTGCCCTCTTGGATAGGKTTCAGACGGTCAGACAGAGAAAAAAGAGAGCCTAGTCATCATCGCGCAATTGGTTTTCAACAAAATACTCACTTTCGACAACTCCTCGCTTCCCCAGTTGTGCTTGTCCACTTGCTGCTTCTCGTCATCGTCGGCCATTTTTTCTGGAAATTTGTTTTATACTTTCTCGGTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33527</snp_id>
        <super_contig>c008300975.Contig1</super_contig>
        <contig_pos>8963</contig_pos>
        <strand>+</strand>
        <context>TACACCATCT[C/T]TTATTAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCACGGCTGCAGAAGCTCTAGGCAGCGGCTCTCCAAGATCTACACCATCT</left_flank>
        <right_flank>TTATTAAATTCCTCATTTTCCATTATCTATTTGTCAGCATTTCTGTAACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGCAGCAATGGAGCTCTCCGCAACGCCATCACGCCGGCCAGAAGCCTCCCCACCAGACTTCAAAATCGGACACATCCATATGGCCTTCATCCCACGCTGACCTCGTAAGACTCCACTTGCAAACAAGTCCCCGTAGCCAAAAACGGGTGCCCGCTCACTTTTCCTAATTAAAAGACCAGGGACGGTCCTCGCTAAAGGTGGTGTAAGGGTCTGCAAGACCCTTATTACTCGGTTTCCCATGTAATCGGTTCTACTGTTTCTAGTCTGATTCCTTAGCGCCACGACGTGCCTTTCTCTCTGGACTTTGCCCGAAGAGTCATGAAATACCATTCTTACATGTGACATATTGGCTCTAAGAGATCAAGATAGAGATTCCCAATCCTCCAGTCCCTCTACAGTCTCTAAACCCTGAATCATCCCGAATTCCAATGACGATTCCCATCGCCCCCACGGCTGCAGAAGCTCTAGGCAGCGGCTCTCCAAGATCTACACCATCTTTTATTAAATTCCTCATTTTCCATTATCTATTTGTCAGCATTTCTGTAACCCCGCCCCAAATTCCATTTATTCCCCGTTTGTATATAAGCCCATTCATGTAACCCTAAAGTCACGATTACACCTTATTCTTTTGTACAGGGCACAAGTCGCCCTTTTCCCCTAAACCAAACCTAAGATTAGAGAATAAATAAGCCTATTTCATATCCATGAACTCTTTATTATTGTATTGTAGGTATGAAGCTGATAATTTATCAGATGGTCAGTTCTGTTTATTTTTAAAAAATTTACTAACAAGGTTTGATGTATGTCCCTGTTGTTCACAATCAGTTTCAAAAAGGTTTCGATGTCCCCTTATCCCAAAATCAGAACTTCCCGAATAAACCTAAAAATAACAAACTCGTTGTTTTCTCCAACTCTAATCCCATCGACATTTACCAATTATCACAACACACACCAGGAGCCATATACGCAAAACACTCGTTGTTGTTTATCTGTCTGTC</canonical>
            <polymorphic>TCGGCAGCAATGGAGCTCTCCGCAACGCCATCACGCCGGCCAGAAGCCTCCCCACCAGACTTCAAAATCGGACACATCCATATGGCCTTCATCCCACGCTGACCTCGTAAGACTCCACTTGCAAACAAGTCCCCGTAGCCAAAAACGGGTGCCCGCTCACTTTTCCTAATTAAAAGACCAGGGACGGTCCTCGCTAAAGGTGGTGTAAGGGTCTGCAAGACCCTTATTACTCGGTTTCCCATGTAATCGGTTCTACTGTTTCTAGTCTGATTCCTTAGCGCCACGACGTGCCTTTCTCTCTGGACTTTGCCCGAAGAGTCATGAAATACCATTCTTACATGTGACATATTGGCTCTAAGAGATCAAGATAGAGATTCCCAATCCTCCAGTCCCTCTACAGTCTCTAAACCCTGAATCATCCCGAATTCCAATGACGATTCCCATCGCCCCCACGGCTGCAGAAGCTCTAGGCAGCGGCTCTCCAAGATCTACACCATCTYTTATTAAATTCCTCATTTTCCATTATCTATTTGTCAGCATTTCTGTAACCCCGCCCCAAATTCCATTTATTCCCCGTTTGTATATAAGCCCATTCATGTAACCCTAAAGTCACGATTACACCTTATTCTTTTGTACAGGGCACAAGTCGCCCTTTTCCCCTAAACCAAACCTAAGATTAGAGAATAAATAAGCCTATTTCATATCCATGAACTCTTTATTATTGTATTGTAGGTATGAAGCTGATAATTTATCAGATGGTCAGTTCTGTTTATTTTTAAAAAATTTACTAACAAGGTTTGATGTATGTCCCTGTTGTTCACAATCAGTTTCAAAAAGGTTTCGATGTCCCCTTATCCCAAAATCAGAACTTCCCGAATAAACCTAAAAATAACAAACTCGTTGTTTTCTCCAACTCTAATCCCATCGACATTTACCAATTATCACAACACACACCAGGAGCCATATACGCAAAACACTCGTTGTTGTTTATCTGTCTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACATGTGACATATTGGCTCTAA</pcr_primer_p1>
		<pcr_primer_p2>ATATACAAACGGGGAATAAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACATGTGACATATTGGCTCTAAGAGATCAAGATAGAGATTCCCAATCCTCCAGTCCCTCTACAGTCTCTAAACCCTGAATCATCCCGAATTCCAATGACGATTCCCATCGCCCCCACGGCTGCAGAAGCTCTAGGCAGCGGCTCTCCAAGATCTACACCATCTTTTATTAAATTCCTCATTTTCCATTATCTATTTGTCAGCATTTCTGTAACCCCGCCCCAAATTCCATTTATTCCCCGTTTGTATAT</canonical_amplicon>
		<polymorphic_amplicon>TACATGTGACATATTGGCTCTAAGAGATCAAGATAGAGATTCCCAATCCTCCAGTCCCTCTACAGTCTCTAAACCCTGAATCATCCCGAATTCCAATGACGATTCCCATCGCCCCCACGGCTGCAGAAGCTCTAGGCAGCGGCTCTCCAAGATCTACACCATCTYTTATTAAATTCCTCATTTTCCATTATCTATTTGTCAGCATTTCTGTAACCCCGCCCCAAATTCCATTTATTCCCCGTTTGTATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33528</snp_id>
        <super_contig>c008300975.Contig1</super_contig>
        <contig_pos>9049</contig_pos>
        <strand>+</strand>
        <context>GTTTGTATAT[A/C]AGCCCATTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGCATTTCTGTAACCCCGCCCCAAATTCCATTTATTCCCCGTTTGTATAT</left_flank>
        <right_flank>AGCCCATTCATGTAACCCTAAAGTCACGATTACACCTTATTCTTTTGTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCATCCCACGCTGACCTCGTAAGACTCCACTTGCAAACAAGTCCCCGTAGCCAAAAACGGGTGCCCGCTCACTTTTCCTAATTAAAAGACCAGGGACGGTCCTCGCTAAAGGTGGTGTAAGGGTCTGCAAGACCCTTATTACTCGGTTTCCCATGTAATCGGTTCTACTGTTTCTAGTCTGATTCCTTAGCGCCACGACGTGCCTTTCTCTCTGGACTTTGCCCGAAGAGTCATGAAATACCATTCTTACATGTGACATATTGGCTCTAAGAGATCAAGATAGAGATTCCCAATCCTCCAGTCCCTCTACAGTCTCTAAACCCTGAATCATCCCGAATTCCAATGACGATTCCCATCGCCCCCACGGCTGCAGAAGCTCTAGGCAGCGGCTCTCCAAGATCTACACCATCTTTTATTAAATTCCTCATTTTCCATTATCTATTTGTCAGCATTTCTGTAACCCCGCCCCAAATTCCATTTATTCCCCGTTTGTATATAAGCCCATTCATGTAACCCTAAAGTCACGATTACACCTTATTCTTTTGTACAGGGCACAAGTCGCCCTTTTCCCCTAAACCAAACCTAAGATTAGAGAATAAATAAGCCTATTTCATATCCATGAACTCTTTATTATTGTATTGTAGGTATGAAGCTGATAATTTATCAGATGGTCAGTTCTGTTTATTTTTAAAAAATTTACTAACAAGGTTTGATGTATGTCCCTGTTGTTCACAATCAGTTTCAAAAAGGTTTCGATGTCCCCTTATCCCAAAATCAGAACTTCCCGAATAAACCTAAAAATAACAAACTCGTTGTTTTCTCCAACTCTAATCCCATCGACATTTACCAATTATCACAACACACACCAGGAGCCATATACGCAAAACACTCGTTGTTGTTTATCTGTCTGTCAAGTTTTTGGTAACAATCCAAGAGATTTATTCGAATTGCGTAGCAGCTTAAAATTGCACACTGCGAACAATGACAATTTCTATCTT</canonical>
            <polymorphic>CTTCATCCCACGCTGACCTCGTAAGACTCCACTTGCAAACAAGTCCCCGTAGCCAAAAACGGGTGCCCGCTCACTTTTCCTAATTAAAAGACCAGGGACGGTCCTCGCTAAAGGTGGTGTAAGGGTCTGCAAGACCCTTATTACTCGGTTTCCCATGTAATCGGTTCTACTGTTTCTAGTCTGATTCCTTAGCGCCACGACGTGCCTTTCTCTCTGGACTTTGCCCGAAGAGTCATGAAATACCATTCTTACATGTGACATATTGGCTCTAAGAGATCAAGATAGAGATTCCCAATCCTCCAGTCCCTCTACAGTCTCTAAACCCTGAATCATCCCGAATTCCAATGACGATTCCCATCGCCCCCACGGCTGCAGAAGCTCTAGGCAGCGGCTCTCCAAGATCTACACCATCTTTTATTAAATTCCTCATTTTCCATTATCTATTTGTCAGCATTTCTGTAACCCCGCCCCAAATTCCATTTATTCCCCGTTTGTATATMAGCCCATTCATGTAACCCTAAAGTCACGATTACACCTTATTCTTTTGTACAGGGCACAAGTCGCCCTTTTCCCCTAAACCAAACCTAAGATTAGAGAATAAATAAGCCTATTTCATATCCATGAACTCTTTATTATTGTATTGTAGGTATGAAGCTGATAATTTATCAGATGGTCAGTTCTGTTTATTTTTAAAAAATTTACTAACAAGGTTTGATGTATGTCCCTGTTGTTCACAATCAGTTTCAAAAAGGTTTCGATGTCCCCTTATCCCAAAATCAGAACTTCCCGAATAAACCTAAAAATAACAAACTCGTTGTTTTCTCCAACTCTAATCCCATCGACATTTACCAATTATCACAACACACACCAGGAGCCATATACGCAAAACACTCGTTGTTGTTTATCTGTCTGTCAAGTTTTTGGTAACAATCCAAGAGATTTATTCGAATTGCGTAGCAGCTTAAAATTGCACACTGCGAACAATGACAATTTCTATCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATTTGTCAGCATTTCTGTAA</pcr_primer_p1>
		<pcr_primer_p2>AAATAAACAGAACTGACCATCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTATTTGTCAGCATTTCTGTAACCCCGCCCCAAATTCCATTTATTCCCCGTTTGTATATAAGCCCATTCATGTAACCCTAAAGTCACGATTACACCTTATTCTTTTGTACAGGGCACAAGTCGCCCTTTTCCCCTAAACCAAACCTAAGATTAGAGAATAAATAAGCCTATTTCATATCCATGAACTCTTTATTATTGTATTGTAGGTATGAAGCTGATAATTTATCAGATGGTCAGTTCTGTTTATTT</canonical_amplicon>
		<polymorphic_amplicon>TCTATTTGTCAGCATTTCTGTAACCCCGCCCCAAATTCCATTTATTCCCCGTTTGTATATMAGCCCATTCATGTAACCCTAAAGTCACGATTACACCTTATTCTTTTGTACAGGGCACAAGTCGCCCTTTTCCCCTAAACCAAACCTAAGATTAGAGAATAAATAAGCCTATTTCATATCCATGAACTCTTTATTATTGTATTGTAGGTATGAAGCTGATAATTTATCAGATGGTCAGTTCTGTTTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33529</snp_id>
        <super_contig>c008300975.Contig1</super_contig>
        <contig_pos>15246</contig_pos>
        <strand>+</strand>
        <context>ATGGTAGAAA[A/G]CGCAACAACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCGTTTGTCATTTAGATCACCCAAAATGGTTTCTCTCTTATGGTAGAAA</left_flank>
        <right_flank>CGCAACAACCACAAAACTGATCGTTTTCCGTTCCGGCAGCACTTTTCTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAACTAGGAATTTTCGAAAAGTTCTGTGAATGTAAATTCCTCAATCTAGGTCTGCTTTAAGCCCTCCAAAATTTTCAAAGTTATTGAAAACTTGACAATCGAGATCCTGACTACGGAAAATGGCCGAGATAACTGGAAATCTACTGAAAAATACGTTTTTGTATATCTTACTGTAAAAAGATTTCCTCGTGCTATAAAGAAGATAAATTGATAAGAAGTACAAACCATTCGCTGACTAATACAGTGATTTTCTAATTTCAATTCTGAATCTTCTACAGAAAACCAAAACAATACGATTTCGTACCTAATTCTTGATACACTATGGGTTTGACCTGTTCAAGACCAGAACATTTATAGTGCGCGGGTAGGGATACGGTATCAGTTGCAAATCGGGTTTCCTTTCTCACGAGATTGACCGTTTCGGTCTTCTTTTTCCCTTTGTCAACCTGTCGTTTGTCATTTAGATCACCCAAAATGGTTTCTCTCTTATGGTAGAAAACGCAACAACCACAAAACTGATCGTTTTCCGTTCCGGCAGCACTTTTCTACACTTTTCTAAGAATCTTTTTGTTCTTTTATAGTACCCTTTGCCCTGACATCTTTGATGATTATAAACCACCCGAAATTCGGGAGAAAAGGCAGAAAAAAATAAAGGGAAAGAGAAAGAAAATTGGTGATTGATAGGCTAGTTAGAAAAAAAGAGGGAAGGAGAAGGAAATTGAGAGGATTCATGTGTGTGTGTGTGTGCAGACATCTACTGGCAAGTACAATTTCGGAAATTCGTGAGTGTCCTGGGTGATGCCTAAAGAGTCGGGAATTTCCTAATAATTTAGTATTAGTACGTGACAGAATGAGAGATACGAAAACAAGATTTTGGAACATTATTCTGAATATTTATGTAGATAAAAATATTTATAGCAACCCATCTGATGTCATTTTCATGCAAAGAATTTCTTTTGAGTATTCTAGTTCTAATGGAAAATTTTTTTGGTTTTTGAG</canonical>
            <polymorphic>TAAACTAGGAATTTTCGAAAAGTTCTGTGAATGTAAATTCCTCAATCTAGGTCTGCTTTAAGCCCTCCAAAATTTTCAAAGTTATTGAAAACTTGACAATCGAGATCCTGACTACGGAAAATGGCCGAGATAACTGGAAATCTACTGAAAAATACGTTTTTGTATATCTTACTGTAAAAAGATTTCCTCGTGCTATAAAGAAGATAAATTGATAAGAAGTACAAACCATTCGCTGACTAATACAGTGATTTTCTAATTTCAATTCTGAATCTTCTACAGAAAACCAAAACAATACGATTTCGTACCTAATTCTTGATACACTATGGGTTTGACCTGTTCAAGACCAGAACATTTATAGTGCGCGGGTAGGGATACGGTATCAGTTGCAAATCGGGTTTCCTTTCTCACGAGATTGACCGTTTCGGTCTTCTTTTTCCCTTTGTCAACCTGTCGTTTGTCATTTAGATCACCCAAAATGGTTTCTCTCTTATGGTAGAAARCGCAACAACCACAAAACTGATCGTTTTCCGTTCCGGCAGCACTTTTCTACACTTTTCTAAGAATCTTTTTGTTCTTTTATAGTACCCTTTGCCCTGACATCTTTGATGATTATAAACCACCCGAAATTCGGGAGAAAAGGCAGAAAAAAATAAAGGGAAAGAGAAAGAAAATTGGTGATTGATAGGCTAGTTAGAAAAAAAGAGGGAAGGAGAAGGAAATTGAGAGGATTCATGTGTGTGTGTGTGTGCAGACATCTACTGGCAAGTACAATTTCGGAAATTCGTGAGTGTCCTGGGTGATGCCTAAAGAGTCGGGAATTTCCTAATAATTTAGTATTAGTACGTGACAGAATGAGAGATACGAAAACAAGATTTTGGAACATTATTCTGAATATTTATGTAGATAAAAATATTTATAGCAACCCATCTGATGTCATTTTCATGCAAAGAATTTCTTTTGAGTATTCTAGTTCTAATGGAAAATTTTTTTGGTTTTTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTTCTTTTTCCCTTTGTCA</pcr_primer_p1>
		<pcr_primer_p2>AATTTTCTTTCTCTTTCCCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCTTCTTTTTCCCTTTGTCAACCTGTCGTTTGTCATTTAGATCACCCAAAATGGTTTCTCTCTTATGGTAGAAAACGCAACAACCACAAAACTGATCGTTTTCCGTTCCGGCAGCACTTTTCTACACTTTTCTAAGAATCTTTTTGTTCTTTTATAGTACCCTTTGCCCTGACATCTTTGATGATTATAAACCACCCGAAATTCGGGAGAAAAGGCAGAAAAAAATAAAGGGAAAGAGAAAGAAAATT</canonical_amplicon>
		<polymorphic_amplicon>GTCTTCTTTTTCCCTTTGTCAACCTGTCGTTTGTCATTTAGATCACCCAAAATGGTTTCTCTCTTATGGTAGAAARCGCAACAACCACAAAACTGATCGTTTTCCGTTCCGGCAGCACTTTTCTACACTTTTCTAAGAATCTTTTTGTTCTTTTATAGTACCCTTTGCCCTGACATCTTTGATGATTATAAACCACCCGAAATTCGGGAGAAAAGGCAGAAAAAAATAAAGGGAAAGAGAAAGAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33530</snp_id>
        <super_contig>c008300975.Contig1</super_contig>
        <contig_pos>15459</contig_pos>
        <strand>+</strand>
        <context>AGGGAAGGAG[A/T]AGGAAATTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAGAAAATTGGTGATTGATAGGCTAGTTAGAAAAAAAGAGGGAAGGAG</left_flank>
        <right_flank>AGGAAATTGAGAGGATTCATGTGTGTGTGTGTGTGCAGACATCTACTGGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAGTACAAACCATTCGCTGACTAATACAGTGATTTTCTAATTTCAATTCTGAATCTTCTACAGAAAACCAAAACAATACGATTTCGTACCTAATTCTTGATACACTATGGGTTTGACCTGTTCAAGACCAGAACATTTATAGTGCGCGGGTAGGGATACGGTATCAGTTGCAAATCGGGTTTCCTTTCTCACGAGATTGACCGTTTCGGTCTTCTTTTTCCCTTTGTCAACCTGTCGTTTGTCATTTAGATCACCCAAAATGGTTTCTCTCTTATGGTAGAAAACGCAACAACCACAAAACTGATCGTTTTCCGTTCCGGCAGCACTTTTCTACACTTTTCTAAGAATCTTTTTGTTCTTTTATAGTACCCTTTGCCCTGACATCTTTGATGATTATAAACCACCCGAAATTCGGGAGAAAAGGCAGAAAAAAATAAAGGGAAAGAGAAAGAAAATTGGTGATTGATAGGCTAGTTAGAAAAAAAGAGGGAAGGAGAAGGAAATTGAGAGGATTCATGTGTGTGTGTGTGTGCAGACATCTACTGGCAAGTACAATTTCGGAAATTCGTGAGTGTCCTGGGTGATGCCTAAAGAGTCGGGAATTTCCTAATAATTTAGTATTAGTACGTGACAGAATGAGAGATACGAAAACAAGATTTTGGAACATTATTCTGAATATTTATGTAGATAAAAATATTTATAGCAACCCATCTGATGTCATTTTCATGCAAAGAATTTCTTTTGAGTATTCTAGTTCTAATGGAAAATTTTTTTGGTTTTTGAGCTTAGCTTCAAATTCATCCTTTTCTTAATACATCCAGTTTCTTTATCGTCCTCTTATCAGTTCGATCAGTCTGAGCTTGCTCAAAATAAAGTTTTTGAACCCAAAACTAACTAGGGAATTAAAAACGTTTTGTAGTATTTGAGTAGTTTATCTAGAAGTACACAAAAAGTACGTGTGATGAATAATGAGAGAAAATGAGTTTCTCGTTTTAAT</canonical>
            <polymorphic>AAGAAGTACAAACCATTCGCTGACTAATACAGTGATTTTCTAATTTCAATTCTGAATCTTCTACAGAAAACCAAAACAATACGATTTCGTACCTAATTCTTGATACACTATGGGTTTGACCTGTTCAAGACCAGAACATTTATAGTGCGCGGGTAGGGATACGGTATCAGTTGCAAATCGGGTTTCCTTTCTCACGAGATTGACCGTTTCGGTCTTCTTTTTCCCTTTGTCAACCTGTCGTTTGTCATTTAGATCACCCAAAATGGTTTCTCTCTTATGGTAGAAAACGCAACAACCACAAAACTGATCGTTTTCCGTTCCGGCAGCACTTTTCTACACTTTTCTAAGAATCTTTTTGTTCTTTTATAGTACCCTTTGCCCTGACATCTTTGATGATTATAAACCACCCGAAATTCGGGAGAAAAGGCAGAAAAAAATAAAGGGAAAGAGAAAGAAAATTGGTGATTGATAGGCTAGTTAGAAAAAAAGAGGGAAGGAGWAGGAAATTGAGAGGATTCATGTGTGTGTGTGTGTGCAGACATCTACTGGCAAGTACAATTTCGGAAATTCGTGAGTGTCCTGGGTGATGCCTAAAGAGTCGGGAATTTCCTAATAATTTAGTATTAGTACGTGACAGAATGAGAGATACGAAAACAAGATTTTGGAACATTATTCTGAATATTTATGTAGATAAAAATATTTATAGCAACCCATCTGATGTCATTTTCATGCAAAGAATTTCTTTTGAGTATTCTAGTTCTAATGGAAAATTTTTTTGGTTTTTGAGCTTAGCTTCAAATTCATCCTTTTCTTAATACATCCAGTTTCTTTATCGTCCTCTTATCAGTTCGATCAGTCTGAGCTTGCTCAAAATAAAGTTTTTGAACCCAAAACTAACTAGGGAATTAAAAACGTTTTGTAGTATTTGAGTAGTTTATCTAGAAGTACACAAAAAGTACGTGTGATGAATAATGAGAGAAAATGAGTTTCTCGTTTTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATAAAGGGAAAGAGAAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTCAGAATAATGTTCCAAAATCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAAATAAAGGGAAAGAGAAAGAAAATTGGTGATTGATAGGCTAGTTAGAAAAAAAGAGGGAAGGAGAAGGAAATTGAGAGGATTCATGTGTGTGTGTGTGTGCAGACATCTACTGGCAAGTACAATTTCGGAAATTCGTGAGTGTCCTGGGTGATGCCTAAAGAGTCGGGAATTTCCTAATAATTTAGTATTAGTACGTGACAGAATGAGAGATACGAAAACAAGATTTTGGAACATTATTCTGAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAATAAAGGGAAAGAGAAAGAAAATTGGTGATTGATAGGCTAGTTAGAAAAAAAGAGGGAAGGAGWAGGAAATTGAGAGGATTCATGTGTGTGTGTGTGTGCAGACATCTACTGGCAAGTACAATTTCGGAAATTCGTGAGTGTCCTGGGTGATGCCTAAAGAGTCGGGAATTTCCTAATAATTTAGTATTAGTACGTGACAGAATGAGAGATACGAAAACAAGATTTTGGAACATTATTCTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33531</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>31949</contig_pos>
        <strand></strand>
        <context>ctgaaaagtc[A/G]ccccaaaatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTGGCTGGAAAATTTGTTTTAGCCTAGCTAAAAACTGGCCTGAAAAGTC</left_flank>
        <right_flank>CCCCAAAATTTCGCCTAGAAATAGGCCCTTAAACCGGCCTGAGAATGCCT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTTGGCCATTTACCGTGGTGGCCTAACTTTTGCAAGTTTGAGTTTTCTAGGCCGCCATGTCAAAGTGGCCTAGAAATGCCCTAACAAGCTCCTAGTTGGGTTTCTAAGCCATTTTAGCATCATGGCCTAGAAAACTCTATTTTGCAAAAGTTAGGCCACTATGGTAAAATGGCCTGGAACACCCGCCAGGGTCATGCATGATGGCCTAGAAAACCCCCAAAAGCAAAAGTTCAGCCACTTACCAAATCGCGCTCCAATGTCAAATTTCTCAGTCTTTTTCGCTCGACTGGACAATTGCTCATGTTAATTTGATGAAGTTCACATTTCAATGGCTGTTTTGAGTCGATTGCGAAATCCCGATCGAATTTCAGCGTGATTTCCGAATTTTCTTGAATTCTATGCGTTGCGGTGACGATGATTCGCAGCACGTCTTCGGAATCGATGAAGTGGCTGGAAAATTTGTTTTAGCCTAGCTAAAAACTGGCCTGAAAAGTCACCCCAAAATTTCGCCTAGAAATAGGCCCTTAAACCGGCCTGAGAATGCCTGAAAAATGGCCTAAAAATGGCCTAAAAATTGGCTTATTTTTAGACCAACTTTTGGGCACAAATTTCAGGCCACGTTTAGGCCAAAACTTTAAGAGTATTTTTAGGTCATTTTCGGCCCAACTTTAAGGGCTTATTTTAGGCTGTTTTTAGCCCTAATTTCAGACTAGTTTTTTGAGGCCTATTTTGAGGCCTATTCTCAGGACAATTTTAGCCTAATTTTTAGGCCAATAGTTAGGCATATTTGAAGGGCATTTCAGGCCAGTTTAGGCCACTTTTTCAGCTGGTTTCAGGTGATTTTTACGCCCCTTTTCGGTCTATTTTTAGGCCATTTTCAGCCTATTATTAAGACCATTTTCAAGCCACTTTTTCGGCCTATTTTTTAGGCCAATTTTTAGACATATTTTCAGATATTTATAGTCTATTTTCAGCCCAATTTTTCTGTCATCTTCA</canonical>
            <polymorphic>ATTTTTTGGCCATTTACCGTGGTGGCCTAACTTTTGCAAGTTTGAGTTTTCTAGGCCGCCATGTCAAAGTGGCCTAGAAATGCCCTAACAAGCTCCTAGTTGGGTTTCTAAGCCATTTTAGCATCATGGCCTAGAAAACTCTATTTTGCAAAAGTTAGGCCACTATGGTAAAATGGCCTGGAACACCCGCCAGGGTCATGCATGATGGCCTAGAAAACCCCCAAAAGCAAAAGTTCAGCCACTTACCAAATCGCGCTCCAATGTCAAATTTCTCAGTCTTTTTCGCTCGACTGGACAATTGCTCATGTTAATTTGATGAAGTTCACATTTCAATGGCTGTTTTGAGTCGATTGCGAAATCCCGATCGAATTTCAGCGTGATTTCCGAATTTTCTTGAATTCTATGCGTTGCGGTGACGATGATTCGCAGCACGTCTTCGGAATCGATGAAGTGGCTGGAAAATTTGTTTTAGCCTAGCTAAAAACTGGCCTGAAAAGTCRCCCCAAAATTTCGCCTAGAAATAGGCCCTTAAACCGGCCTGAGAATGCCTGAAAAATGGCCTAAAAATGGCCTAAAAATTGGCTTATTTTTAGACCAACTTTTGGGCACAAATTTCAGGCCACGTTTAGGCCAAAACTTTAAGAGTATTTTTAGGTCATTTTCGGCCCAACTTTAAGGGCTTATTTTAGGCTGTTTTTAGCCCTAATTTCAGACTAGTTTTTTGAGGCCTATTTTGAGGCCTATTCTCAGGACAATTTTAGCCTAATTTTTAGGCCAATAGTTAGGCATATTTGAAGGGCATTTCAGGCCAGTTTAGGCCACTTTTTCAGCTGGTTTCAGGTGATTTTTACGCCCCTTTTCGGTCTATTTTTAGGCCATTTTCAGCCTATTATTAAGACCATTTTCAAGCCACTTTTTCGGCCTATTTTTTAGGCCAATTTTTAGACATATTTTCAGATATTTATAGTCTATTTTCAGCCCAATTTTTCTGTCATCTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>199 108 91 88 84 69 56 54 47 47 36 23 22 22 21 16 14 3</canonical_bands>
                <polymorphic_bands>199 155 91 88 84 69 56 54 47 36 23 22 22 21 16 14 3</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 412 84</canonical_bands>
                <polymorphic_bands>588 412</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>504 412 84</canonical_bands>
                <polymorphic_bands>588 412</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAATTTTCTTGAATTCTATGC</pcr_primer_p1>
		<pcr_primer_p2>CCCAAAAGTTGGTCTAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>222</pcr_amplicon_size>
		<canonical_amplicon>CGAATTTTCTTGAATTCTATGCGTTGCGGTGACGATGATTCGCAGCACGTCTTCGGAATCGATGAAGTGGCTGGAAAATTTGTTTTAGCCTAGCTAAAAACTGGCCTGAAAAGTCACCCCAAAATTTCGCCTAGAAATAGGCCCTTAAACCGGCCTGAGAATGCCTGAAAAATGGCCTAAAAATGGCCTAAAAATTGGCTTATTTTTAGACCAACTTTTGGG</canonical_amplicon>
		<polymorphic_amplicon>CGAATTTTCTTGAATTCTATGCGTTGCGGTGACGATGATTCGCAGCACGTCTTCGGAATCGATGAAGTGGCTGGAAAATTTGTTTTAGCCTAGCTAAAAACTGGCCTGAAAAGTCRCCCCAAAATTTCGCCTAGAAATAGGCCCTTAAACCGGCCTGAGAATGCCTGAAAAATGGCCTAAAAATGGCCTAAAAATTGGCTTATTTTTAGACCAACTTTTGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33532</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>31983</contig_pos>
        <strand></strand>
        <context>ggcccttaaa[C/T]cggcctgaga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTGGCCTGAAAAGTCACCCCAAAATTTCGCCTAGAAATAGGCCCTTAAA</left_flank>
        <right_flank>CGGCCTGAGAATGCCTGAAAAATGGCCTAAAAATGGCCTAAAAATTGGCT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCAAGTTTGAGTTTTCTAGGCCGCCATGTCAAAGTGGCCTAGAAATGCCCTAACAAGCTCCTAGTTGGGTTTCTAAGCCATTTTAGCATCATGGCCTAGAAAACTCTATTTTGCAAAAGTTAGGCCACTATGGTAAAATGGCCTGGAACACCCGCCAGGGTCATGCATGATGGCCTAGAAAACCCCCAAAAGCAAAAGTTCAGCCACTTACCAAATCGCGCTCCAATGTCAAATTTCTCAGTCTTTTTCGCTCGACTGGACAATTGCTCATGTTAATTTGATGAAGTTCACATTTCAATGGCTGTTTTGAGTCGATTGCGAAATCCCGATCGAATTTCAGCGTGATTTCCGAATTTTCTTGAATTCTATGCGTTGCGGTGACGATGATTCGCAGCACGTCTTCGGAATCGATGAAGTGGCTGGAAAATTTGTTTTAGCCTAGCTAAAAACTGGCCTGAAAAGTCACCCCAAAATTTCGCCTAGAAATAGGCCCTTAAACCGGCCTGAGAATGCCTGAAAAATGGCCTAAAAATGGCCTAAAAATTGGCTTATTTTTAGACCAACTTTTGGGCACAAATTTCAGGCCACGTTTAGGCCAAAACTTTAAGAGTATTTTTAGGTCATTTTCGGCCCAACTTTAAGGGCTTATTTTAGGCTGTTTTTAGCCCTAATTTCAGACTAGTTTTTTGAGGCCTATTTTGAGGCCTATTCTCAGGACAATTTTAGCCTAATTTTTAGGCCAATAGTTAGGCATATTTGAAGGGCATTTCAGGCCAGTTTAGGCCACTTTTTCAGCTGGTTTCAGGTGATTTTTACGCCCCTTTTCGGTCTATTTTTAGGCCATTTTCAGCCTATTATTAAGACCATTTTCAAGCCACTTTTTCGGCCTATTTTTTAGGCCAATTTTTAGACATATTTTCAGATATTTATAGTCTATTTTCAGCCCAATTTTTCTGTCATCTTCAGGCCATTTTCAGACCTATTTTCAGTCATTTTCAG</canonical>
            <polymorphic>TGCAAGTTTGAGTTTTCTAGGCCGCCATGTCAAAGTGGCCTAGAAATGCCCTAACAAGCTCCTAGTTGGGTTTCTAAGCCATTTTAGCATCATGGCCTAGAAAACTCTATTTTGCAAAAGTTAGGCCACTATGGTAAAATGGCCTGGAACACCCGCCAGGGTCATGCATGATGGCCTAGAAAACCCCCAAAAGCAAAAGTTCAGCCACTTACCAAATCGCGCTCCAATGTCAAATTTCTCAGTCTTTTTCGCTCGACTGGACAATTGCTCATGTTAATTTGATGAAGTTCACATTTCAATGGCTGTTTTGAGTCGATTGCGAAATCCCGATCGAATTTCAGCGTGATTTCCGAATTTTCTTGAATTCTATGCGTTGCGGTGACGATGATTCGCAGCACGTCTTCGGAATCGATGAAGTGGCTGGAAAATTTGTTTTAGCCTAGCTAAAAACTGGCCTGAAAAGTCACCCCAAAATTTCGCCTAGAAATAGGCCCTTAAAYCGGCCTGAGAATGCCTGAAAAATGGCCTAAAAATGGCCTAAAAATTGGCTTATTTTTAGACCAACTTTTGGGCACAAATTTCAGGCCACGTTTAGGCCAAAACTTTAAGAGTATTTTTAGGTCATTTTCGGCCCAACTTTAAGGGCTTATTTTAGGCTGTTTTTAGCCCTAATTTCAGACTAGTTTTTTGAGGCCTATTTTGAGGCCTATTCTCAGGACAATTTTAGCCTAATTTTTAGGCCAATAGTTAGGCATATTTGAAGGGCATTTCAGGCCAGTTTAGGCCACTTTTTCAGCTGGTTTCAGGTGATTTTTACGCCCCTTTTCGGTCTATTTTTAGGCCATTTTCAGCCTATTATTAAGACCATTTTCAAGCCACTTTTTCGGCCTATTTTTTAGGCCAATTTTTAGACATATTTTCAGATATTTATAGTCTATTTTCAGCCCAATTTTTCTGTCATCTTCAGGCCATTTTCAGACCTATTTTCAGTCATTTTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAATTTTCTTGAATTCTATGC</pcr_primer_p1>
		<pcr_primer_p2>CCCAAAAGTTGGTCTAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>222</pcr_amplicon_size>
		<canonical_amplicon>CGAATTTTCTTGAATTCTATGCGTTGCGGTGACGATGATTCGCAGCACGTCTTCGGAATCGATGAAGTGGCTGGAAAATTTGTTTTAGCCTAGCTAAAAACTGGCCTGAAAAGTCACCCCAAAATTTCGCCTAGAAATAGGCCCTTAAACCGGCCTGAGAATGCCTGAAAAATGGCCTAAAAATGGCCTAAAAATTGGCTTATTTTTAGACCAACTTTTGGG</canonical_amplicon>
		<polymorphic_amplicon>CGAATTTTCTTGAATTCTATGCGTTGCGGTGACGATGATTCGCAGCACGTCTTCGGAATCGATGAAGTGGCTGGAAAATTTGTTTTAGCCTAGCTAAAAACTGGCCTGAAAAGTCACCCCAAAATTTCGCCTAGAAATAGGCCCTTAAAYCGGCCTGAGAATGCCTGAAAAATGGCCTAAAAATGGCCTAAAAATTGGCTTATTTTTAGACCAACTTTTGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33533</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>32185</contig_pos>
        <strand></strand>
        <context>ggcctatttt[G/C]aggcctattc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TTAGGCTGTTTTTAGCCCTAATTTCAGACTAGTTTTTTGAGGCCTATTTT</left_flank>
        <right_flank>AGGCCTATTCTCAGGACAATTTTAGCCTAATTTTTAGGCCAATAGTTAGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCACTTACCAAATCGCGCTCCAATGTCAAATTTCTCAGTCTTTTTCGCTCGACTGGACAATTGCTCATGTTAATTTGATGAAGTTCACATTTCAATGGCTGTTTTGAGTCGATTGCGAAATCCCGATCGAATTTCAGCGTGATTTCCGAATTTTCTTGAATTCTATGCGTTGCGGTGACGATGATTCGCAGCACGTCTTCGGAATCGATGAAGTGGCTGGAAAATTTGTTTTAGCCTAGCTAAAAACTGGCCTGAAAAGTCACCCCAAAATTTCGCCTAGAAATAGGCCCTTAAACCGGCCTGAGAATGCCTGAAAAATGGCCTAAAAATGGCCTAAAAATTGGCTTATTTTTAGACCAACTTTTGGGCACAAATTTCAGGCCACGTTTAGGCCAAAACTTTAAGAGTATTTTTAGGTCATTTTCGGCCCAACTTTAAGGGCTTATTTTAGGCTGTTTTTAGCCCTAATTTCAGACTAGTTTTTTGAGGCCTATTTTGAGGCCTATTCTCAGGACAATTTTAGCCTAATTTTTAGGCCAATAGTTAGGCATATTTGAAGGGCATTTCAGGCCAGTTTAGGCCACTTTTTCAGCTGGTTTCAGGTGATTTTTACGCCCCTTTTCGGTCTATTTTTAGGCCATTTTCAGCCTATTATTAAGACCATTTTCAAGCCACTTTTTCGGCCTATTTTTTAGGCCAATTTTTAGACATATTTTCAGATATTTATAGTCTATTTTCAGCCCAATTTTTCTGTCATCTTCAGGCCATTTTCAGACCTATTTTCAGTCATTTTCAGGGGGGCATTTTTAAGCTTCAAAAACTCACTCAAAATGGGCGTTCGGCTTACAGGAACGTCTCAAAAATCGACACTCATTGATCGGATCGATACAGAATATCGATTTTGGGTATCGATGATCACCAAATGCACTTTTTTGGGCGTTTTTCGTCAAAAAATTCGCCGTATACATCCATTTTCCACTTCTTTCGTCTTCTGGAGT</canonical>
            <polymorphic>AGCCACTTACCAAATCGCGCTCCAATGTCAAATTTCTCAGTCTTTTTCGCTCGACTGGACAATTGCTCATGTTAATTTGATGAAGTTCACATTTCAATGGCTGTTTTGAGTCGATTGCGAAATCCCGATCGAATTTCAGCGTGATTTCCGAATTTTCTTGAATTCTATGCGTTGCGGTGACGATGATTCGCAGCACGTCTTCGGAATCGATGAAGTGGCTGGAAAATTTGTTTTAGCCTAGCTAAAAACTGGCCTGAAAAGTCACCCCAAAATTTCGCCTAGAAATAGGCCCTTAAACCGGCCTGAGAATGCCTGAAAAATGGCCTAAAAATGGCCTAAAAATTGGCTTATTTTTAGACCAACTTTTGGGCACAAATTTCAGGCCACGTTTAGGCCAAAACTTTAAGAGTATTTTTAGGTCATTTTCGGCCCAACTTTAAGGGCTTATTTTAGGCTGTTTTTAGCCCTAATTTCAGACTAGTTTTTTGAGGCCTATTTTSAGGCCTATTCTCAGGACAATTTTAGCCTAATTTTTAGGCCAATAGTTAGGCATATTTGAAGGGCATTTCAGGCCAGTTTAGGCCACTTTTTCAGCTGGTTTCAGGTGATTTTTACGCCCCTTTTCGGTCTATTTTTAGGCCATTTTCAGCCTATTATTAAGACCATTTTCAAGCCACTTTTTCGGCCTATTTTTTAGGCCAATTTTTAGACATATTTTCAGATATTTATAGTCTATTTTCAGCCCAATTTTTCTGTCATCTTCAGGCCATTTTCAGACCTATTTTCAGTCATTTTCAGGGGGGCATTTTTAAGCTTCAAAAACTCACTCAAAATGGGCGTTCGGCTTACAGGAACGTCTCAAAAATCGACACTCATTGATCGGATCGATACAGAATATCGATTTTGGGTATCGATGATCACCAAATGCACTTTTTTGGGCGTTTTTCGTCAAAAAATTCGCCGTATACATCCATTTTCCACTTCTTTCGTCTTCTGGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATTTTCTTGAATTCTATGC</pcr_primer_p1>
		<pcr_primer_p2>CCATTTTGAGTGAGTTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>688</pcr_amplicon_size>
		<canonical_amplicon>CGAATTTTCTTGAATTCTATGCGTTGCGGTGACGATGATTCGCAGCACGTCTTCGGAATCGATGAAGTGGCTGGAAAATTTGTTTTAGCCTAGCTAAAAACTGGCCTGAAAAGTCACCCCAAAATTTCGCCTAGAAATAGGCCCTTAAACCGGCCTGAGAATGCCTGAAAAATGGCCTAAAAATGGCCTAAAAATTGGCTTATTTTTAGACCAACTTTTGGGCACAAATTTCAGGCCACGTTTAGGCCAAAACTTTAAGAGTATTTTTAGGTCATTTTCGGCCCAACTTTAAGGGCTTATTTTAGGCTGTTTTTAGCCCTAATTTCAGACTAGTTTTTTGAGGCCTATTTTGAGGCCTATTCTCAGGACAATTTTAGCCTAATTTTTAGGCCAATAGTTAGGCATATTTGAAGGGCATTTCAGGCCAGTTTAGGCCACTTTTTCAGCTGGTTTCAGGTGATTTTTACGCCCCTTTTCGGTCTATTTTTAGGCCATTTTCAGCCTATTATTAAGACCATTTTCAAGCCACTTTTTCGGCCTATTTTTTAGGCCAATTTTTAGACATATTTTCAGATATTTATAGTCTATTTTCAGCCCAATTTTTCTGTCATCTTCAGGCCATTTTCAGACCTATTTTCAGTCATTTTCAGGGGGGCATTTTTAAGCTTCAAAAACTCACTCAAAATGG</canonical_amplicon>
		<polymorphic_amplicon>CGAATTTTCTTGAATTCTATGCGTTGCGGTGACGATGATTCGCAGCACGTCTTCGGAATCGATGAAGTGGCTGGAAAATTTGTTTTAGCCTAGCTAAAAACTGGCCTGAAAAGTCACCCCAAAATTTCGCCTAGAAATAGGCCCTTAAACCGGCCTGAGAATGCCTGAAAAATGGCCTAAAAATGGCCTAAAAATTGGCTTATTTTTAGACCAACTTTTGGGCACAAATTTCAGGCCACGTTTAGGCCAAAACTTTAAGAGTATTTTTAGGTCATTTTCGGCCCAACTTTAAGGGCTTATTTTAGGCTGTTTTTAGCCCTAATTTCAGACTAGTTTTTTGAGGCCTATTTTSAGGCCTATTCTCAGGACAATTTTAGCCTAATTTTTAGGCCAATAGTTAGGCATATTTGAAGGGCATTTCAGGCCAGTTTAGGCCACTTTTTCAGCTGGTTTCAGGTGATTTTTACGCCCCTTTTCGGTCTATTTTTAGGCCATTTTCAGCCTATTATTAAGACCATTTTCAAGCCACTTTTTCGGCCTATTTTTTAGGCCAATTTTTAGACATATTTTCAGATATTTATAGTCTATTTTCAGCCCAATTTTTCTGTCATCTTCAGGCCATTTTCAGACCTATTTTCAGTCATTTTCAGGGGGGCATTTTTAAGCTTCAAAAACTCACTCAAAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33534</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>32315</contig_pos>
        <strand></strand>
        <context>cttttcggtc[T/A]atttttaggc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGGCCACTTTTTCAGCTGGTTTCAGGTGATTTTTACGCCCCTTTTCGGTC</left_flank>
        <right_flank>ATTTTTAGGCCATTTTCAGCCTATTATTAAGACCATTTTCAAGCCACTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTTCAGCGTGATTTCCGAATTTTCTTGAATTCTATGCGTTGCGGTGACGATGATTCGCAGCACGTCTTCGGAATCGATGAAGTGGCTGGAAAATTTGTTTTAGCCTAGCTAAAAACTGGCCTGAAAAGTCACCCCAAAATTTCGCCTAGAAATAGGCCCTTAAACCGGCCTGAGAATGCCTGAAAAATGGCCTAAAAATGGCCTAAAAATTGGCTTATTTTTAGACCAACTTTTGGGCACAAATTTCAGGCCACGTTTAGGCCAAAACTTTAAGAGTATTTTTAGGTCATTTTCGGCCCAACTTTAAGGGCTTATTTTAGGCTGTTTTTAGCCCTAATTTCAGACTAGTTTTTTGAGGCCTATTTTGAGGCCTATTCTCAGGACAATTTTAGCCTAATTTTTAGGCCAATAGTTAGGCATATTTGAAGGGCATTTCAGGCCAGTTTAGGCCACTTTTTCAGCTGGTTTCAGGTGATTTTTACGCCCCTTTTCGGTCTATTTTTAGGCCATTTTCAGCCTATTATTAAGACCATTTTCAAGCCACTTTTTCGGCCTATTTTTTAGGCCAATTTTTAGACATATTTTCAGATATTTATAGTCTATTTTCAGCCCAATTTTTCTGTCATCTTCAGGCCATTTTCAGACCTATTTTCAGTCATTTTCAGGGGGGCATTTTTAAGCTTCAAAAACTCACTCAAAATGGGCGTTCGGCTTACAGGAACGTCTCAAAAATCGACACTCATTGATCGGATCGATACAGAATATCGATTTTGGGTATCGATGATCACCAAATGCACTTTTTTGGGCGTTTTTCGTCAAAAAATTCGCCGTATACATCCATTTTCCACTTCTTTCGTCTTCTGGAGTCTCGGTGAGCAATGCCACGTGGCCAATCAGCTCCAGAAGGATGGTACCAGGATTCACGTTTGATAACGCTAGAAGCTTGACGTCTTCTGGGTCTTCTGAATTCTGAATCAATCGAAATTGGCGAATTCTC</canonical>
            <polymorphic>GAATTTCAGCGTGATTTCCGAATTTTCTTGAATTCTATGCGTTGCGGTGACGATGATTCGCAGCACGTCTTCGGAATCGATGAAGTGGCTGGAAAATTTGTTTTAGCCTAGCTAAAAACTGGCCTGAAAAGTCACCCCAAAATTTCGCCTAGAAATAGGCCCTTAAACCGGCCTGAGAATGCCTGAAAAATGGCCTAAAAATGGCCTAAAAATTGGCTTATTTTTAGACCAACTTTTGGGCACAAATTTCAGGCCACGTTTAGGCCAAAACTTTAAGAGTATTTTTAGGTCATTTTCGGCCCAACTTTAAGGGCTTATTTTAGGCTGTTTTTAGCCCTAATTTCAGACTAGTTTTTTGAGGCCTATTTTGAGGCCTATTCTCAGGACAATTTTAGCCTAATTTTTAGGCCAATAGTTAGGCATATTTGAAGGGCATTTCAGGCCAGTTTAGGCCACTTTTTCAGCTGGTTTCAGGTGATTTTTACGCCCCTTTTCGGTCWATTTTTAGGCCATTTTCAGCCTATTATTAAGACCATTTTCAAGCCACTTTTTCGGCCTATTTTTTAGGCCAATTTTTAGACATATTTTCAGATATTTATAGTCTATTTTCAGCCCAATTTTTCTGTCATCTTCAGGCCATTTTCAGACCTATTTTCAGTCATTTTCAGGGGGGCATTTTTAAGCTTCAAAAACTCACTCAAAATGGGCGTTCGGCTTACAGGAACGTCTCAAAAATCGACACTCATTGATCGGATCGATACAGAATATCGATTTTGGGTATCGATGATCACCAAATGCACTTTTTTGGGCGTTTTTCGTCAAAAAATTCGCCGTATACATCCATTTTCCACTTCTTTCGTCTTCTGGAGTCTCGGTGAGCAATGCCACGTGGCCAATCAGCTCCAGAAGGATGGTACCAGGATTCACGTTTGATAACGCTAGAAGCTTGACGTCTTCTGGGTCTTCTGAATTCTGAATCAATCGAAATTGGCGAATTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATTTTCTTGAATTCTATGC</pcr_primer_p1>
		<pcr_primer_p2>CCATTTTGAGTGAGTTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>688</pcr_amplicon_size>
		<canonical_amplicon>CGAATTTTCTTGAATTCTATGCGTTGCGGTGACGATGATTCGCAGCACGTCTTCGGAATCGATGAAGTGGCTGGAAAATTTGTTTTAGCCTAGCTAAAAACTGGCCTGAAAAGTCACCCCAAAATTTCGCCTAGAAATAGGCCCTTAAACCGGCCTGAGAATGCCTGAAAAATGGCCTAAAAATGGCCTAAAAATTGGCTTATTTTTAGACCAACTTTTGGGCACAAATTTCAGGCCACGTTTAGGCCAAAACTTTAAGAGTATTTTTAGGTCATTTTCGGCCCAACTTTAAGGGCTTATTTTAGGCTGTTTTTAGCCCTAATTTCAGACTAGTTTTTTGAGGCCTATTTTGAGGCCTATTCTCAGGACAATTTTAGCCTAATTTTTAGGCCAATAGTTAGGCATATTTGAAGGGCATTTCAGGCCAGTTTAGGCCACTTTTTCAGCTGGTTTCAGGTGATTTTTACGCCCCTTTTCGGTCTATTTTTAGGCCATTTTCAGCCTATTATTAAGACCATTTTCAAGCCACTTTTTCGGCCTATTTTTTAGGCCAATTTTTAGACATATTTTCAGATATTTATAGTCTATTTTCAGCCCAATTTTTCTGTCATCTTCAGGCCATTTTCAGACCTATTTTCAGTCATTTTCAGGGGGGCATTTTTAAGCTTCAAAAACTCACTCAAAATGG</canonical_amplicon>
		<polymorphic_amplicon>CGAATTTTCTTGAATTCTATGCGTTGCGGTGACGATGATTCGCAGCACGTCTTCGGAATCGATGAAGTGGCTGGAAAATTTGTTTTAGCCTAGCTAAAAACTGGCCTGAAAAGTCACCCCAAAATTTCGCCTAGAAATAGGCCCTTAAACCGGCCTGAGAATGCCTGAAAAATGGCCTAAAAATGGCCTAAAAATTGGCTTATTTTTAGACCAACTTTTGGGCACAAATTTCAGGCCACGTTTAGGCCAAAACTTTAAGAGTATTTTTAGGTCATTTTCGGCCCAACTTTAAGGGCTTATTTTAGGCTGTTTTTAGCCCTAATTTCAGACTAGTTTTTTGAGGCCTATTTTGAGGCCTATTCTCAGGACAATTTTAGCCTAATTTTTAGGCCAATAGTTAGGCATATTTGAAGGGCATTTCAGGCCAGTTTAGGCCACTTTTTCAGCTGGTTTCAGGTGATTTTTACGCCCCTTTTCGGTCWATTTTTAGGCCATTTTCAGCCTATTATTAAGACCATTTTCAAGCCACTTTTTCGGCCTATTTTTTAGGCCAATTTTTAGACATATTTTCAGATATTTATAGTCTATTTTCAGCCCAATTTTTCTGTCATCTTCAGGCCATTTTCAGACCTATTTTCAGTCATTTTCAGGGGGGCATTTTTAAGCTTCAAAAACTCACTCAAAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33535</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>32361</contig_pos>
        <strand></strand>
        <context>ttttcaagcc[A/G]mtttttmggc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTCTATTTTTAGGCCATTTTCAGCCTATTATTAAGACCATTTTCAAGCC</left_flank>
        <right_flank>CTTTTTCGGCCTATTTTTTAGGCCAATTTTTAGACATATTTTCAGATATT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGACGATGATTCGCAGCACGTCTTCGGAATCGATGAAGTGGCTGGAAAATTTGTTTTAGCCTAGCTAAAAACTGGCCTGAAAAGTCACCCCAAAATTTCGCCTAGAAATAGGCCCTTAAACCGGCCTGAGAATGCCTGAAAAATGGCCTAAAAATGGCCTAAAAATTGGCTTATTTTTAGACCAACTTTTGGGCACAAATTTCAGGCCACGTTTAGGCCAAAACTTTAAGAGTATTTTTAGGTCATTTTCGGCCCAACTTTAAGGGCTTATTTTAGGCTGTTTTTAGCCCTAATTTCAGACTAGTTTTTTGAGGCCTATTTTGAGGCCTATTCTCAGGACAATTTTAGCCTAATTTTTAGGCCAATAGTTAGGCATATTTGAAGGGCATTTCAGGCCAGTTTAGGCCACTTTTTCAGCTGGTTTCAGGTGATTTTTACGCCCCTTTTCGGTCTATTTTTAGGCCATTTTCAGCCTATTATTAAGACCATTTTCAAGCCACTTTTTCGGCCTATTTTTTAGGCCAATTTTTAGACATATTTTCAGATATTTATAGTCTATTTTCAGCCCAATTTTTCTGTCATCTTCAGGCCATTTTCAGACCTATTTTCAGTCATTTTCAGGGGGGCATTTTTAAGCTTCAAAAACTCACTCAAAATGGGCGTTCGGCTTACAGGAACGTCTCAAAAATCGACACTCATTGATCGGATCGATACAGAATATCGATTTTGGGTATCGATGATCACCAAATGCACTTTTTTGGGCGTTTTTCGTCAAAAAATTCGCCGTATACATCCATTTTCCACTTCTTTCGTCTTCTGGAGTCTCGGTGAGCAATGCCACGTGGCCAATCAGCTCCAGAAGGATGGTACCAGGATTCACGTTTGATAACGCTAGAAGCTTGACGTCTTCTGGGTCTTCTGAATTCTGAATCAATCGAAATTGGCGAATTCTCAAATTCTGAGCGCGATAGTTCCTGATTTTCTGAGTTTTCGAATTTT</canonical>
            <polymorphic>GTGACGATGATTCGCAGCACGTCTTCGGAATCGATGAAGTGGCTGGAAAATTTGTTTTAGCCTAGCTAAAAACTGGCCTGAAAAGTCACCCCAAAATTTCGCCTAGAAATAGGCCCTTAAACCGGCCTGAGAATGCCTGAAAAATGGCCTAAAAATGGCCTAAAAATTGGCTTATTTTTAGACCAACTTTTGGGCACAAATTTCAGGCCACGTTTAGGCCAAAACTTTAAGAGTATTTTTAGGTCATTTTCGGCCCAACTTTAAGGGCTTATTTTAGGCTGTTTTTAGCCCTAATTTCAGACTAGTTTTTTGAGGCCTATTTTGAGGCCTATTCTCAGGACAATTTTAGCCTAATTTTTAGGCCAATAGTTAGGCATATTTGAAGGGCATTTCAGGCCAGTTTAGGCCACTTTTTCAGCTGGTTTCAGGTGATTTTTACGCCCCTTTTCGGTCTATTTTTAGGCCATTTTCAGCCTATTATTAAGACCATTTTCAAGCCRCTTTTTCGGCCTATTTTTTAGGCCAATTTTTAGACATATTTTCAGATATTTATAGTCTATTTTCAGCCCAATTTTTCTGTCATCTTCAGGCCATTTTCAGACCTATTTTCAGTCATTTTCAGGGGGGCATTTTTAAGCTTCAAAAACTCACTCAAAATGGGCGTTCGGCTTACAGGAACGTCTCAAAAATCGACACTCATTGATCGGATCGATACAGAATATCGATTTTGGGTATCGATGATCACCAAATGCACTTTTTTGGGCGTTTTTCGTCAAAAAATTCGCCGTATACATCCATTTTCCACTTCTTTCGTCTTCTGGAGTCTCGGTGAGCAATGCCACGTGGCCAATCAGCTCCAGAAGGATGGTACCAGGATTCACGTTTGATAACGCTAGAAGCTTGACGTCTTCTGGGTCTTCTGAATTCTGAATCAATCGAAATTGGCGAATTCTCAAATTCTGAGCGCGATAGTTCCTGATTTTCTGAGTTTTCGAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>199 150 120 108 69 51 49 47 45 35 27 22 22 16 14 10 9 4 3</canonical_bands>
                <polymorphic_bands>219 199 120 108 51 49 47 45 35 27 22 22 16 14 10 9 4 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAATTTTCTTGAATTCTATGC</pcr_primer_p1>
		<pcr_primer_p2>CCATTTTGAGTGAGTTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>688</pcr_amplicon_size>
		<canonical_amplicon>CACTTTTTCGGCCTATTTTTTAGGCCAATTTTTAGACATATTTTCAGATATTTATAGTCTATTTTCAGCCCAATTTTTCTGTCATCTTCAGGCCATTTTCAGACCTATTTTCAGTCATTTTCAGGGGGGCATTTTTAAGCTTCAAAAACTCACTCAAAATGG</canonical_amplicon>
		<polymorphic_amplicon>CRCTTTTTCGGCCTATTTTTTAGGCCAATTTTTAGACATATTTTCAGATATTTATAGTCTATTTTCAGCCCAATTTTTCTGTCATCTTCAGGCCATTTTCAGACCTATTTTCAGTCATTTTCAGGGGGGCATTTTTAAGCTTCAAAAACTCACTCAAAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33536</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>32362</contig_pos>
        <strand></strand>
        <context>tttcaagccr[C/A]tttttmggcc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GTCTATTTTTAGGCCATTTTCAGCCTATTATTAAGACCATTTTCAAGCCA</left_flank>
        <right_flank>TTTTTCGGCCTATTTTTTAGGCCAATTTTTAGACATATTTTCAGATATTT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACGATGATTCGCAGCACGTCTTCGGAATCGATGAAGTGGCTGGAAAATTTGTTTTAGCCTAGCTAAAAACTGGCCTGAAAAGTCACCCCAAAATTTCGCCTAGAAATAGGCCCTTAAACCGGCCTGAGAATGCCTGAAAAATGGCCTAAAAATGGCCTAAAAATTGGCTTATTTTTAGACCAACTTTTGGGCACAAATTTCAGGCCACGTTTAGGCCAAAACTTTAAGAGTATTTTTAGGTCATTTTCGGCCCAACTTTAAGGGCTTATTTTAGGCTGTTTTTAGCCCTAATTTCAGACTAGTTTTTTGAGGCCTATTTTGAGGCCTATTCTCAGGACAATTTTAGCCTAATTTTTAGGCCAATAGTTAGGCATATTTGAAGGGCATTTCAGGCCAGTTTAGGCCACTTTTTCAGCTGGTTTCAGGTGATTTTTACGCCCCTTTTCGGTCTATTTTTAGGCCATTTTCAGCCTATTATTAAGACCATTTTCAAGCCACTTTTTCGGCCTATTTTTTAGGCCAATTTTTAGACATATTTTCAGATATTTATAGTCTATTTTCAGCCCAATTTTTCTGTCATCTTCAGGCCATTTTCAGACCTATTTTCAGTCATTTTCAGGGGGGCATTTTTAAGCTTCAAAAACTCACTCAAAATGGGCGTTCGGCTTACAGGAACGTCTCAAAAATCGACACTCATTGATCGGATCGATACAGAATATCGATTTTGGGTATCGATGATCACCAAATGCACTTTTTTGGGCGTTTTTCGTCAAAAAATTCGCCGTATACATCCATTTTCCACTTCTTTCGTCTTCTGGAGTCTCGGTGAGCAATGCCACGTGGCCAATCAGCTCCAGAAGGATGGTACCAGGATTCACGTTTGATAACGCTAGAAGCTTGACGTCTTCTGGGTCTTCTGAATTCTGAATCAATCGAAATTGGCGAATTCTCAAATTCTGAGCGCGATAGTTCCTGATTTTCTGAGTTTTCGAATTTTT</canonical>
            <polymorphic>TGACGATGATTCGCAGCACGTCTTCGGAATCGATGAAGTGGCTGGAAAATTTGTTTTAGCCTAGCTAAAAACTGGCCTGAAAAGTCACCCCAAAATTTCGCCTAGAAATAGGCCCTTAAACCGGCCTGAGAATGCCTGAAAAATGGCCTAAAAATGGCCTAAAAATTGGCTTATTTTTAGACCAACTTTTGGGCACAAATTTCAGGCCACGTTTAGGCCAAAACTTTAAGAGTATTTTTAGGTCATTTTCGGCCCAACTTTAAGGGCTTATTTTAGGCTGTTTTTAGCCCTAATTTCAGACTAGTTTTTTGAGGCCTATTTTGAGGCCTATTCTCAGGACAATTTTAGCCTAATTTTTAGGCCAATAGTTAGGCATATTTGAAGGGCATTTCAGGCCAGTTTAGGCCACTTTTTCAGCTGGTTTCAGGTGATTTTTACGCCCCTTTTCGGTCTATTTTTAGGCCATTTTCAGCCTATTATTAAGACCATTTTCAAGCCAMTTTTTCGGCCTATTTTTTAGGCCAATTTTTAGACATATTTTCAGATATTTATAGTCTATTTTCAGCCCAATTTTTCTGTCATCTTCAGGCCATTTTCAGACCTATTTTCAGTCATTTTCAGGGGGGCATTTTTAAGCTTCAAAAACTCACTCAAAATGGGCGTTCGGCTTACAGGAACGTCTCAAAAATCGACACTCATTGATCGGATCGATACAGAATATCGATTTTGGGTATCGATGATCACCAAATGCACTTTTTTGGGCGTTTTTCGTCAAAAAATTCGCCGTATACATCCATTTTCCACTTCTTTCGTCTTCTGGAGTCTCGGTGAGCAATGCCACGTGGCCAATCAGCTCCAGAAGGATGGTACCAGGATTCACGTTTGATAACGCTAGAAGCTTGACGTCTTCTGGGTCTTCTGAATTCTGAATCAATCGAAATTGGCGAATTCTCAAATTCTGAGCGCGATAGTTCCTGATTTTCTGAGTTTTCGAATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>199 150 121 108 69 51 49 47 45 35 27 22 22 18 14 10 9 4</canonical_bands>
                <polymorphic_bands>219 199 121 108 51 49 47 45 35 27 22 22 18 14 10 9 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAATTTTCTTGAATTCTATGC</pcr_primer_p1>
		<pcr_primer_p2>CCATTTTGAGTGAGTTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>688</pcr_amplicon_size>
		<canonical_amplicon>ACTTTTTCGGCCTATTTTTTAGGCCAATTTTTAGACATATTTTCAGATATTTATAGTCTATTTTCAGCCCAATTTTTCTGTCATCTTCAGGCCATTTTCAGACCTATTTTCAGTCATTTTCAGGGGGGCATTTTTAAGCTTCAAAAACTCACTCAAAATGG</canonical_amplicon>
		<polymorphic_amplicon>AMTTTTTCGGCCTATTTTTTAGGCCAATTTTTAGACATATTTTCAGATATTTATAGTCTATTTTCAGCCCAATTTTTCTGTCATCTTCAGGCCATTTTCAGACCTATTTTCAGTCATTTTCAGGGGGGCATTTTTAAGCTTCAAAAACTCACTCAAAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33537</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>32368</contig_pos>
        <strand></strand>
        <context>gccrmttttt[C/A]ggcctatttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTTAGGCCATTTTCAGCCTATTATTAAGACCATTTTCAAGCCACTTTTT</left_flank>
        <right_flank>GGCCTATTTTTTAGGCCAATTTTTAGACATATTTTCAGATATTTATAGTC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATTCGCAGCACGTCTTCGGAATCGATGAAGTGGCTGGAAAATTTGTTTTAGCCTAGCTAAAAACTGGCCTGAAAAGTCACCCCAAAATTTCGCCTAGAAATAGGCCCTTAAACCGGCCTGAGAATGCCTGAAAAATGGCCTAAAAATGGCCTAAAAATTGGCTTATTTTTAGACCAACTTTTGGGCACAAATTTCAGGCCACGTTTAGGCCAAAACTTTAAGAGTATTTTTAGGTCATTTTCGGCCCAACTTTAAGGGCTTATTTTAGGCTGTTTTTAGCCCTAATTTCAGACTAGTTTTTTGAGGCCTATTTTGAGGCCTATTCTCAGGACAATTTTAGCCTAATTTTTAGGCCAATAGTTAGGCATATTTGAAGGGCATTTCAGGCCAGTTTAGGCCACTTTTTCAGCTGGTTTCAGGTGATTTTTACGCCCCTTTTCGGTCTATTTTTAGGCCATTTTCAGCCTATTATTAAGACCATTTTCAAGCCACTTTTTCGGCCTATTTTTTAGGCCAATTTTTAGACATATTTTCAGATATTTATAGTCTATTTTCAGCCCAATTTTTCTGTCATCTTCAGGCCATTTTCAGACCTATTTTCAGTCATTTTCAGGGGGGCATTTTTAAGCTTCAAAAACTCACTCAAAATGGGCGTTCGGCTTACAGGAACGTCTCAAAAATCGACACTCATTGATCGGATCGATACAGAATATCGATTTTGGGTATCGATGATCACCAAATGCACTTTTTTGGGCGTTTTTCGTCAAAAAATTCGCCGTATACATCCATTTTCCACTTCTTTCGTCTTCTGGAGTCTCGGTGAGCAATGCCACGTGGCCAATCAGCTCCAGAAGGATGGTACCAGGATTCACGTTTGATAACGCTAGAAGCTTGACGTCTTCTGGGTCTTCTGAATTCTGAATCAATCGAAATTGGCGAATTCTCAAATTCTGAGCGCGATAGTTCCTGATTTTCTGAGTTTTCGAATTTTTTTTGTG</canonical>
            <polymorphic>TGATTCGCAGCACGTCTTCGGAATCGATGAAGTGGCTGGAAAATTTGTTTTAGCCTAGCTAAAAACTGGCCTGAAAAGTCACCCCAAAATTTCGCCTAGAAATAGGCCCTTAAACCGGCCTGAGAATGCCTGAAAAATGGCCTAAAAATGGCCTAAAAATTGGCTTATTTTTAGACCAACTTTTGGGCACAAATTTCAGGCCACGTTTAGGCCAAAACTTTAAGAGTATTTTTAGGTCATTTTCGGCCCAACTTTAAGGGCTTATTTTAGGCTGTTTTTAGCCCTAATTTCAGACTAGTTTTTTGAGGCCTATTTTGAGGCCTATTCTCAGGACAATTTTAGCCTAATTTTTAGGCCAATAGTTAGGCATATTTGAAGGGCATTTCAGGCCAGTTTAGGCCACTTTTTCAGCTGGTTTCAGGTGATTTTTACGCCCCTTTTCGGTCTATTTTTAGGCCATTTTCAGCCTATTATTAAGACCATTTTCAAGCCACTTTTTMGGCCTATTTTTTAGGCCAATTTTTAGACATATTTTCAGATATTTATAGTCTATTTTCAGCCCAATTTTTCTGTCATCTTCAGGCCATTTTCAGACCTATTTTCAGTCATTTTCAGGGGGGCATTTTTAAGCTTCAAAAACTCACTCAAAATGGGCGTTCGGCTTACAGGAACGTCTCAAAAATCGACACTCATTGATCGGATCGATACAGAATATCGATTTTGGGTATCGATGATCACCAAATGCACTTTTTTGGGCGTTTTTCGTCAAAAAATTCGCCGTATACATCCATTTTCCACTTCTTTCGTCTTCTGGAGTCTCGGTGAGCAATGCCACGTGGCCAATCAGCTCCAGAAGGATGGTACCAGGATTCACGTTTGATAACGCTAGAAGCTTGACGTCTTCTGGGTCTTCTGAATTCTGAATCAATCGAAATTGGCGAATTCTCAAATTCTGAGCGCGATAGTTCCTGATTTTCTGAGTTTTCGAATTTTTTTTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATTTTCTTGAATTCTATGC</pcr_primer_p1>
		<pcr_primer_p2>CCATTTTGAGTGAGTTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>688</pcr_amplicon_size>
		<canonical_amplicon>TCGGCCTATTTTTTAGGCCAATTTTTAGACATATTTTCAGATATTTATAGTCTATTTTCAGCCCAATTTTTCTGTCATCTTCAGGCCATTTTCAGACCTATTTTCAGTCATTTTCAGGGGGGCATTTTTAAGCTTCAAAAACTCACTCAAAATGG</canonical_amplicon>
		<polymorphic_amplicon>TMGGCCTATTTTTTAGGCCAATTTTTAGACATATTTTCAGATATTTATAGTCTATTTTCAGCCCAATTTTTCTGTCATCTTCAGGCCATTTTCAGACCTATTTTCAGTCATTTTCAGGGGGGCATTTTTAAGCTTCAAAAACTCACTCAAAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33538</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>32425</contig_pos>
        <strand></strand>
        <context>agtctatttt[C/T]agcccaattt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTAGGCCAATTTTTAGACATATTTTCAGATATTTATAGTCTATTTT</left_flank>
        <right_flank>AGCCCAATTTTTCTGTCATCTTCAGGCCATTTTCAGACCTATTTTCAGTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTAAAAACTGGCCTGAAAAGTCACCCCAAAATTTCGCCTAGAAATAGGCCCTTAAACCGGCCTGAGAATGCCTGAAAAATGGCCTAAAAATGGCCTAAAAATTGGCTTATTTTTAGACCAACTTTTGGGCACAAATTTCAGGCCACGTTTAGGCCAAAACTTTAAGAGTATTTTTAGGTCATTTTCGGCCCAACTTTAAGGGCTTATTTTAGGCTGTTTTTAGCCCTAATTTCAGACTAGTTTTTTGAGGCCTATTTTGAGGCCTATTCTCAGGACAATTTTAGCCTAATTTTTAGGCCAATAGTTAGGCATATTTGAAGGGCATTTCAGGCCAGTTTAGGCCACTTTTTCAGCTGGTTTCAGGTGATTTTTACGCCCCTTTTCGGTCTATTTTTAGGCCATTTTCAGCCTATTATTAAGACCATTTTCAAGCCACTTTTTCGGCCTATTTTTTAGGCCAATTTTTAGACATATTTTCAGATATTTATAGTCTATTTTCAGCCCAATTTTTCTGTCATCTTCAGGCCATTTTCAGACCTATTTTCAGTCATTTTCAGGGGGGCATTTTTAAGCTTCAAAAACTCACTCAAAATGGGCGTTCGGCTTACAGGAACGTCTCAAAAATCGACACTCATTGATCGGATCGATACAGAATATCGATTTTGGGTATCGATGATCACCAAATGCACTTTTTTGGGCGTTTTTCGTCAAAAAATTCGCCGTATACATCCATTTTCCACTTCTTTCGTCTTCTGGAGTCTCGGTGAGCAATGCCACGTGGCCAATCAGCTCCAGAAGGATGGTACCAGGATTCACGTTTGATAACGCTAGAAGCTTGACGTCTTCTGGGTCTTCTGAATTCTGAATCAATCGAAATTGGCGAATTCTCAAATTCTGAGCGCGATAGTTCCTGATTTTCTGAGTTTTCGAATTTTTTTTGTGCAACGTTTTCAGAAGCGCGATGACATCTTCTGAGTAGGTATTCTGAAAAAAAAATTT</canonical>
            <polymorphic>GCTAAAAACTGGCCTGAAAAGTCACCCCAAAATTTCGCCTAGAAATAGGCCCTTAAACCGGCCTGAGAATGCCTGAAAAATGGCCTAAAAATGGCCTAAAAATTGGCTTATTTTTAGACCAACTTTTGGGCACAAATTTCAGGCCACGTTTAGGCCAAAACTTTAAGAGTATTTTTAGGTCATTTTCGGCCCAACTTTAAGGGCTTATTTTAGGCTGTTTTTAGCCCTAATTTCAGACTAGTTTTTTGAGGCCTATTTTGAGGCCTATTCTCAGGACAATTTTAGCCTAATTTTTAGGCCAATAGTTAGGCATATTTGAAGGGCATTTCAGGCCAGTTTAGGCCACTTTTTCAGCTGGTTTCAGGTGATTTTTACGCCCCTTTTCGGTCTATTTTTAGGCCATTTTCAGCCTATTATTAAGACCATTTTCAAGCCACTTTTTCGGCCTATTTTTTAGGCCAATTTTTAGACATATTTTCAGATATTTATAGTCTATTTTYAGCCCAATTTTTCTGTCATCTTCAGGCCATTTTCAGACCTATTTTCAGTCATTTTCAGGGGGGCATTTTTAAGCTTCAAAAACTCACTCAAAATGGGCGTTCGGCTTACAGGAACGTCTCAAAAATCGACACTCATTGATCGGATCGATACAGAATATCGATTTTGGGTATCGATGATCACCAAATGCACTTTTTTGGGCGTTTTTCGTCAAAAAATTCGCCGTATACATCCATTTTCCACTTCTTTCGTCTTCTGGAGTCTCGGTGAGCAATGCCACGTGGCCAATCAGCTCCAGAAGGATGGTACCAGGATTCACGTTTGATAACGCTAGAAGCTTGACGTCTTCTGGGTCTTCTGAATTCTGAATCAATCGAAATTGGCGAATTCTCAAATTCTGAGCGCGATAGTTCCTGATTTTCTGAGTTTTCGAATTTTTTTTGTGCAACGTTTTCAGAAGCGCGATGACATCTTCTGAGTAGGTATTCTGAAAAAAAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATTTTCTTGAATTCTATGC</pcr_primer_p1>
		<pcr_primer_p2>CCATTTTGAGTGAGTTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>688</pcr_amplicon_size>
		<canonical_amplicon>TCAGCCCAATTTTTCTGTCATCTTCAGGCCATTTTCAGACCTATTTTCAGTCATTTTCAGGGGGGCATTTTTAAGCTTCAAAAACTCACTCAAAATGG</canonical_amplicon>
		<polymorphic_amplicon>TYAGCCCAATTTTTCTGTCATCTTCAGGCCATTTTCAGACCTATTTTCAGTCATTTTCAGGGGGGCATTTTTAAGCTTCAAAAACTCACTCAAAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33539</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>32462</contig_pos>
        <strand></strand>
        <context>ccattttcag[A/C]cctattttca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATAGTCTATTTTCAGCCCAATTTTTCTGTCATCTTCAGGCCATTTTCAG</left_flank>
        <right_flank>CCTATTTTCAGTCATTTTCAGGGGGGCATTTTTAAGCTTCAAAAACTCAC</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTAGAAATAGGCCCTTAAACCGGCCTGAGAATGCCTGAAAAATGGCCTAAAAATGGCCTAAAAATTGGCTTATTTTTAGACCAACTTTTGGGCACAAATTTCAGGCCACGTTTAGGCCAAAACTTTAAGAGTATTTTTAGGTCATTTTCGGCCCAACTTTAAGGGCTTATTTTAGGCTGTTTTTAGCCCTAATTTCAGACTAGTTTTTTGAGGCCTATTTTGAGGCCTATTCTCAGGACAATTTTAGCCTAATTTTTAGGCCAATAGTTAGGCATATTTGAAGGGCATTTCAGGCCAGTTTAGGCCACTTTTTCAGCTGGTTTCAGGTGATTTTTACGCCCCTTTTCGGTCTATTTTTAGGCCATTTTCAGCCTATTATTAAGACCATTTTCAAGCCACTTTTTCGGCCTATTTTTTAGGCCAATTTTTAGACATATTTTCAGATATTTATAGTCTATTTTCAGCCCAATTTTTCTGTCATCTTCAGGCCATTTTCAGACCTATTTTCAGTCATTTTCAGGGGGGCATTTTTAAGCTTCAAAAACTCACTCAAAATGGGCGTTCGGCTTACAGGAACGTCTCAAAAATCGACACTCATTGATCGGATCGATACAGAATATCGATTTTGGGTATCGATGATCACCAAATGCACTTTTTTGGGCGTTTTTCGTCAAAAAATTCGCCGTATACATCCATTTTCCACTTCTTTCGTCTTCTGGAGTCTCGGTGAGCAATGCCACGTGGCCAATCAGCTCCAGAAGGATGGTACCAGGATTCACGTTTGATAACGCTAGAAGCTTGACGTCTTCTGGGTCTTCTGAATTCTGAATCAATCGAAATTGGCGAATTCTCAAATTCTGAGCGCGATAGTTCCTGATTTTCTGAGTTTTCGAATTTTTTTTGTGCAACGTTTTCAGAAGCGCGATGACATCTTCTGAGTAGGTATTCTGAAAAAAAAATTTTTTTTTGAAAATTTTTTTTGGGATTACTGTACCTCGA</canonical>
            <polymorphic>CCTAGAAATAGGCCCTTAAACCGGCCTGAGAATGCCTGAAAAATGGCCTAAAAATGGCCTAAAAATTGGCTTATTTTTAGACCAACTTTTGGGCACAAATTTCAGGCCACGTTTAGGCCAAAACTTTAAGAGTATTTTTAGGTCATTTTCGGCCCAACTTTAAGGGCTTATTTTAGGCTGTTTTTAGCCCTAATTTCAGACTAGTTTTTTGAGGCCTATTTTGAGGCCTATTCTCAGGACAATTTTAGCCTAATTTTTAGGCCAATAGTTAGGCATATTTGAAGGGCATTTCAGGCCAGTTTAGGCCACTTTTTCAGCTGGTTTCAGGTGATTTTTACGCCCCTTTTCGGTCTATTTTTAGGCCATTTTCAGCCTATTATTAAGACCATTTTCAAGCCACTTTTTCGGCCTATTTTTTAGGCCAATTTTTAGACATATTTTCAGATATTTATAGTCTATTTTCAGCCCAATTTTTCTGTCATCTTCAGGCCATTTTCAGMCCTATTTTCAGTCATTTTCAGGGGGGCATTTTTAAGCTTCAAAAACTCACTCAAAATGGGCGTTCGGCTTACAGGAACGTCTCAAAAATCGACACTCATTGATCGGATCGATACAGAATATCGATTTTGGGTATCGATGATCACCAAATGCACTTTTTTGGGCGTTTTTCGTCAAAAAATTCGCCGTATACATCCATTTTCCACTTCTTTCGTCTTCTGGAGTCTCGGTGAGCAATGCCACGTGGCCAATCAGCTCCAGAAGGATGGTACCAGGATTCACGTTTGATAACGCTAGAAGCTTGACGTCTTCTGGGTCTTCTGAATTCTGAATCAATCGAAATTGGCGAATTCTCAAATTCTGAGCGCGATAGTTCCTGATTTTCTGAGTTTTCGAATTTTTTTTGTGCAACGTTTTCAGAAGCGCGATGACATCTTCTGAGTAGGTATTCTGAAAAAAAAATTTTTTTTTGAAAATTTTTTTTGGGATTACTGTACCTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>245 215 198 107 55 50 33 33 24 20 13 7</canonical_bands>
                <polymorphic_bands>245 215 198 162 50 33 33 24 20 13 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAATTTTCTTGAATTCTATGC</pcr_primer_p1>
		<pcr_primer_p2>CCATTTTGAGTGAGTTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>688</pcr_amplicon_size>
		<canonical_amplicon>GACCTATTTTCAGTCATTTTCAGGGGGGCATTTTTAAGCTTCAAAAACTCACTCAAAATGG</canonical_amplicon>
		<polymorphic_amplicon>GMCCTATTTTCAGTCATTTTCAGGGGGGCATTTTTAAGCTTCAAAAACTCACTCAAAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33540</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>67292</contig_pos>
        <strand>-</strand>
        <context>TTGAATATTT[G/T]GAATGGCTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCAAGAAGGCTTTTGGATTTTCAGACATTTTGAGAGCATTTTGAATATTT</left_flank>
        <right_flank>GAATGGCTTGCATCGAAATTGGTCCACCTACATAATCCGGATCTTCGTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTAACCAATAAGGAATCGCCGTCTGTGATGCATCTGAAAAGTATTGAATTTAATTATTTTTTCGAACATATCCTGTTCCTCACCGTAATTATTGTAATCATTGATATCAGGGGCTGATGTAACTATACCTTCTGGAAAAAAGGGATTTTTCAAAACTCCCTAACTCTTGCTCAACTGTCTTACCTCCCGAAAGATCTGGAGAATCAGTAGCCACTGTGGTGGGAGTCACTGTGCTATCATCGGGAGTAGTATCTAAAAGCACCGGAATCCCCAACGCCTCAAAAATCGATTCCAGAACGTTCGAGGGCACATCCATCAGCGATTTCTTGACTTCCTCAATACTGTAACCCTTATCAATGATAGTAACAGCTTCATGCAAAACCATCCATTTCGGAGAATTCGTAGTGGCGGGAGATTTCAAAAAATCCATACAAATATCAAGAAATTCCAAGAAGGCTTTTGGATTTTCAGACATTTTGAGAGCATTTTGAATATTTCGAATGGCTTGCATCGAAATTGGTCCACCTACATAATCCGGATCTTCGTATTTCTTATTTTTTCGAATTAAAGTATACAAAGTGTGTTTGTAGGAACTACTTTTGACTGCAAAGTTCATAATAGTCTTCAATTCGAAAAGTATCAATCGTTTCTCCATCAAATCCGCTTCATTCTCAATCATTCGATCAATAATTGGGGGCGGAGTCTGTAGAATTTGAATTCCCAAATAGTTTGAGGTCTTGTTGGGAGAATCCATTGGCCAGTTTCAATTAGAGTTTTGATATCTTCAAAACTCGCATTTCCCTCAAATTTCTCGACAGATCGATCGATAAATTCAAATTTGAGTACTTCGTTATTGTTGGATGTCTTCAAAAAATCCATACAAATCTCCAAAAATTCCACAACAGTCAAGGGATTTTTAGAATTCTTGAAAACTTCCCGAATATTGTCGATTGCTTTTTCGGAAACGTTTCCACCAATATTTGTTGGATTTCTTAAAT</canonical>
            <polymorphic>TTCTAACCAATAAGGAATCGCCGTCTGTGATGCATCTGAAAAGTATTGAATTTAATTATTTTTTCGAACATATCCTGTTCCTCACCGTAATTATTGTAATCATTGATATCAGGGGCTGATGTAACTATACCTTCTGGAAAAAAGGGATTTTTCAAAACTCCCTAACTCTTGCTCAACTGTCTTACCTCCCGAAAGATCTGGAGAATCAGTAGCCACTGTGGTGGGAGTCACTGTGCTATCATCGGGAGTAGTATCTAAAAGCACCGGAATCCCCAACGCCTCAAAAATCGATTCCAGAACGTTCGAGGGCACATCCATCAGCGATTTCTTGACTTCCTCAATACTGTAACCCTTATCAATGATAGTAACAGCTTCATGCAAAACCATCCATTTCGGAGAATTCGTAGTGGCGGGAGATTTCAAAAAATCCATACAAATATCAAGAAATTCCAAGAAGGCTTTTGGATTTTCAGACATTTTGAGAGCATTTTGAATATTTKGAATGGCTTGCATCGAAATTGGTCCACCTACATAATCCGGATCTTCGTATTTCTTATTTTTTCGAATTAAAGTATACAAAGTGTGTTTGTAGGAACTACTTTTGACTGCAAAGTTCATAATAGTCTTCAATTCGAAAAGTATCAATCGTTTCTCCATCAAATCCGCTTCATTCTCAATCATTCGATCAATAATTGGGGGCGGAGTCTGTAGAATTTGAATTCCCAAATAGTTTGAGGTCTTGTTGGGAGAATCCATTGGCCAGTTTCAATTAGAGTTTTGATATCTTCAAAACTCGCATTTCCCTCAAATTTCTCGACAGATCGATCGATAAATTCAAATTTGAGTACTTCGTTATTGTTGGATGTCTTCAAAAAATCCATACAAATCTCCAAAAATTCCACAACAGTCAAGGGATTTTTAGAATTCTTGAAAACTTCCCGAATATTGTCGATTGCTTTTTCGGAAACGTTTCCACCAATATTTGTTGGATTTCTTAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>435 368 70 64 63</canonical_bands>
                <polymorphic_bands>498 368 70 64</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>224 196 132 123 70 65 50 50 49 15 14 8 4</canonical_bands>
                <polymorphic_bands>224 210 132 123 70 65 50 50 49 15 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAGTAACAGCTTCATGCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GCAGTCAAAAGTAGTTCCTACAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATAGTAACAGCTTCATGCAAAACCATCCATTTCGGAGAATTCGTAGTGGCGGGAGATTTCAAAAAATCCATACAAATATCAAGAAATTCCAAGAAGGCTTTTGGATTTTCAGACATTTTGAGAGCATTTTGAATATTTCGAATGGCTTGCATCGAAATTGGTCCACCTACATAATCCGGATCTTCGTATTTCTTATTTTTTCGAATTAAAGTATACAAAGTGTGTTTGTAGGAACTACTTTTGACTGC</canonical_amplicon>
		<polymorphic_amplicon>ATAGTAACAGCTTCATGCAAAACCATCCATTTCGGAGAATTCGTAGTGGCGGGAGATTTCAAAAAATCCATACAAATATCAAGAAATTCCAAGAAGGCTTTTGGATTTTCAGACATTTTGAGAGCATTTTGAATATTTKGAATGGCTTGCATCGAAATTGGTCCACCTACATAATCCGGATCTTCGTATTTCTTATTTTTTCGAATTAAAGTATACAAAGTGTGTTTGTAGGAACTACTTTTGACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33541</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>67587</contig_pos>
        <strand>-</strand>
        <context>CTTCAAAACT[A/G]GKATTTCCCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGAGAATCCATTGGCCAGTTTCAATTAGAGTTTTGATATCTTCAAAACT</left_flank>
        <right_flank>GCATTTCCCTCAAATTTCTCGACAGATCGATCGATAAATTCAAATTTGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAACGTTCGAGGGCACATCCATCAGCGATTTCTTGACTTCCTCAATACTGTAACCCTTATCAATGATAGTAACAGCTTCATGCAAAACCATCCATTTCGGAGAATTCGTAGTGGCGGGAGATTTCAAAAAATCCATACAAATATCAAGAAATTCCAAGAAGGCTTTTGGATTTTCAGACATTTTGAGAGCATTTTGAATATTTCGAATGGCTTGCATCGAAATTGGTCCACCTACATAATCCGGATCTTCGTATTTCTTATTTTTTCGAATTAAAGTATACAAAGTGTGTTTGTAGGAACTACTTTTGACTGCAAAGTTCATAATAGTCTTCAATTCGAAAAGTATCAATCGTTTCTCCATCAAATCCGCTTCATTCTCAATCATTCGATCAATAATTGGGGGCGGAGTCTGTAGAATTTGAATTCCCAAATAGTTTGAGGTCTTGTTGGGAGAATCCATTGGCCAGTTTCAATTAGAGTTTTGATATCTTCAAAACTCGCATTTCCCTCAAATTTCTCGACAGATCGATCGATAAATTCAAATTTGAGTACTTCGTTATTGTTGGATGTCTTCAAAAAATCCATACAAATCTCCAAAAATTCCACAACAGTCAAGGGATTTTTAGAATTCTTGAAAACTTCCCGAATATTGTCGATTGCTTTTTCGGAAACGTTTCCACCAATATTTGTTGGATTTCTTAAATTTTTTTCAACAATTTTCACCAATTCGTATTTGAAGTATTGTGTTGGGGACCATGAGAGAATTGTTGCCACAGATTCCAGCACGATTTTTTGCTCTGAATTAGTAGCTTGATTGGCAATCAATCGATCGATTATCGATTTTTCGGGACGGACGCTTGACAACCCAATCAGTAGTAAGAGGGTTGGGACTCCTGAAAATTCAAAAATGTGTACCTAAAAAATGCTGAAAGGACAAACCTCTCATTTTGTGATGCTTCTTCTAGGAGAAGGGGAAGAAGTTTTCAAACTGATTCGATT</canonical>
            <polymorphic>AGAACGTTCGAGGGCACATCCATCAGCGATTTCTTGACTTCCTCAATACTGTAACCCTTATCAATGATAGTAACAGCTTCATGCAAAACCATCCATTTCGGAGAATTCGTAGTGGCGGGAGATTTCAAAAAATCCATACAAATATCAAGAAATTCCAAGAAGGCTTTTGGATTTTCAGACATTTTGAGAGCATTTTGAATATTTCGAATGGCTTGCATCGAAATTGGTCCACCTACATAATCCGGATCTTCGTATTTCTTATTTTTTCGAATTAAAGTATACAAAGTGTGTTTGTAGGAACTACTTTTGACTGCAAAGTTCATAATAGTCTTCAATTCGAAAAGTATCAATCGTTTCTCCATCAAATCCGCTTCATTCTCAATCATTCGATCAATAATTGGGGGCGGAGTCTGTAGAATTTGAATTCCCAAATAGTTTGAGGTCTTGTTGGGAGAATCCATTGGCCAGTTTCAATTAGAGTTTTGATATCTTCAAAACTRGCATTTCCCTCAAATTTCTCGACAGATCGATCGATAAATTCAAATTTGAGTACTTCGTTATTGTTGGATGTCTTCAAAAAATCCATACAAATCTCCAAAAATTCCACAACAGTCAAGGGATTTTTAGAATTCTTGAAAACTTCCCGAATATTGTCGATTGCTTTTTCGGAAACGTTTCCACCAATATTTGTTGGATTTCTTAAATTTTTTTCAACAATTTTCACCAATTCGTATTTGAAGTATTGTGTTGGGGACCATGAGAGAATTGTTGCCACAGATTCCAGCACGATTTTTTGCTCTGAATTAGTAGCTTGATTGGCAATCAATCGATCGATTATCGATTTTTCGGGACGGACGCTTGACAACCCAATCAGTAGTAAGAGGGTTGGGACTCCTGAAAATTCAAAAATGTGTACCTAAAAAATGCTGAAAGGACAAACCTCTCATTTTGTGATGCTTCTTCTAGGAGAAGGGGAAGAAGTTTTCAAACTGATTCGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCAATTCGAAAAGTATCAATC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAAGACATCCAACAATAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCAATTCGAAAAGTATCAATCGTTTCTCCATCAAATCCGCTTCATTCTCAATCATTCGATCAATAATTGGGGGCGGAGTCTGTAGAATTTGAATTCCCAAATAGTTTGAGGTCTTGTTGGGAGAATCCATTGGCCAGTTTCAATTAGAGTTTTGATATCTTCAAAACTCGCATTTCCCTCAAATTTCTCGACAGATCGATCGATAAATTCAAATTTGAGTACTTCGTTATTGTTGGATGTCTTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>CTTCAATTCGAAAAGTATCAATCGTTTCTCCATCAAATCCGCTTCATTCTCAATCATTCGATCAATAATTGGGGGCGGAGTCTGTAGAATTTGAATTCCCAAATAGTTTGAGGTCTTGTTGGGAGAATCCATTGGCCAGTTTCAATTAGAGTTTTGATATCTTCAAAACTRGCATTTCCCTCAAATTTCTCGACAGATCGATCGATAAATTCAAATTTGAGTACTTCGTTATTGTTGGATGTCTTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33542</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>67589</contig_pos>
        <strand>-</strand>
        <context>TCAAAACTRG[G/T]ATTTCCCTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAGAATCCATTGGCCAGTTTCAATTAGAGTTTTGATATCTTCAAAACTCG</left_flank>
        <right_flank>ATTTCCCTCAAATTTCTCGACAGATCGATCGATAAATTCAAATTTGAGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGTTCGAGGGCACATCCATCAGCGATTTCTTGACTTCCTCAATACTGTAACCCTTATCAATGATAGTAACAGCTTCATGCAAAACCATCCATTTCGGAGAATTCGTAGTGGCGGGAGATTTCAAAAAATCCATACAAATATCAAGAAATTCCAAGAAGGCTTTTGGATTTTCAGACATTTTGAGAGCATTTTGAATATTTCGAATGGCTTGCATCGAAATTGGTCCACCTACATAATCCGGATCTTCGTATTTCTTATTTTTTCGAATTAAAGTATACAAAGTGTGTTTGTAGGAACTACTTTTGACTGCAAAGTTCATAATAGTCTTCAATTCGAAAAGTATCAATCGTTTCTCCATCAAATCCGCTTCATTCTCAATCATTCGATCAATAATTGGGGGCGGAGTCTGTAGAATTTGAATTCCCAAATAGTTTGAGGTCTTGTTGGGAGAATCCATTGGCCAGTTTCAATTAGAGTTTTGATATCTTCAAAACTCGCATTTCCCTCAAATTTCTCGACAGATCGATCGATAAATTCAAATTTGAGTACTTCGTTATTGTTGGATGTCTTCAAAAAATCCATACAAATCTCCAAAAATTCCACAACAGTCAAGGGATTTTTAGAATTCTTGAAAACTTCCCGAATATTGTCGATTGCTTTTTCGGAAACGTTTCCACCAATATTTGTTGGATTTCTTAAATTTTTTTCAACAATTTTCACCAATTCGTATTTGAAGTATTGTGTTGGGGACCATGAGAGAATTGTTGCCACAGATTCCAGCACGATTTTTTGCTCTGAATTAGTAGCTTGATTGGCAATCAATCGATCGATTATCGATTTTTCGGGACGGACGCTTGACAACCCAATCAGTAGTAAGAGGGTTGGGACTCCTGAAAATTCAAAAATGTGTACCTAAAAAATGCTGAAAGGACAAACCTCTCATTTTGTGATGCTTCTTCTAGGAGAAGGGGAAGAAGTTTTCAAACTGATTCGATTTA</canonical>
            <polymorphic>AACGTTCGAGGGCACATCCATCAGCGATTTCTTGACTTCCTCAATACTGTAACCCTTATCAATGATAGTAACAGCTTCATGCAAAACCATCCATTTCGGAGAATTCGTAGTGGCGGGAGATTTCAAAAAATCCATACAAATATCAAGAAATTCCAAGAAGGCTTTTGGATTTTCAGACATTTTGAGAGCATTTTGAATATTTCGAATGGCTTGCATCGAAATTGGTCCACCTACATAATCCGGATCTTCGTATTTCTTATTTTTTCGAATTAAAGTATACAAAGTGTGTTTGTAGGAACTACTTTTGACTGCAAAGTTCATAATAGTCTTCAATTCGAAAAGTATCAATCGTTTCTCCATCAAATCCGCTTCATTCTCAATCATTCGATCAATAATTGGGGGCGGAGTCTGTAGAATTTGAATTCCCAAATAGTTTGAGGTCTTGTTGGGAGAATCCATTGGCCAGTTTCAATTAGAGTTTTGATATCTTCAAAACTCGKATTTCCCTCAAATTTCTCGACAGATCGATCGATAAATTCAAATTTGAGTACTTCGTTATTGTTGGATGTCTTCAAAAAATCCATACAAATCTCCAAAAATTCCACAACAGTCAAGGGATTTTTAGAATTCTTGAAAACTTCCCGAATATTGTCGATTGCTTTTTCGGAAACGTTTCCACCAATATTTGTTGGATTTCTTAAATTTTTTTCAACAATTTTCACCAATTCGTATTTGAAGTATTGTGTTGGGGACCATGAGAGAATTGTTGCCACAGATTCCAGCACGATTTTTTGCTCTGAATTAGTAGCTTGATTGGCAATCAATCGATCGATTATCGATTTTTCGGGACGGACGCTTGACAACCCAATCAGTAGTAAGAGGGTTGGGACTCCTGAAAATTCAAAAATGTGTACCTAAAAAATGCTGAAAGGACAAACCTCTCATTTTGTGATGCTTCTTCTAGGAGAAGGGGAAGAAGTTTTCAAACTGATTCGATTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCAATTCGAAAAGTATCAATC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAAGACATCCAACAATAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCAATTCGAAAAGTATCAATCGTTTCTCCATCAAATCCGCTTCATTCTCAATCATTCGATCAATAATTGGGGGCGGAGTCTGTAGAATTTGAATTCCCAAATAGTTTGAGGTCTTGTTGGGAGAATCCATTGGCCAGTTTCAATTAGAGTTTTGATATCTTCAAAACTCGCATTTCCCTCAAATTTCTCGACAGATCGATCGATAAATTCAAATTTGAGTACTTCGTTATTGTTGGATGTCTTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>CTTCAATTCGAAAAGTATCAATCGTTTCTCCATCAAATCCGCTTCATTCTCAATCATTCGATCAATAATTGGGGGCGGAGTCTGTAGAATTTGAATTCCCAAATAGTTTGAGGTCTTGTTGGGAGAATCCATTGGCCAGTTTCAATTAGAGTTTTGATATCTTCAAAACTCGKATTTCCCTCAAATTTCTCGACAGATCGATCGATAAATTCAAATTTGAGTACTTCGTTATTGTTGGATGTCTTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33543</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>67626</contig_pos>
        <strand>-</strand>
        <context>GATCGATAAA[A/T]TCAAATTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTTCAAAACTCGCATTTCCCTCAAATTTCTCGACAGATCGATCGATAAA</left_flank>
        <right_flank>TCAAATTTGAGTACTTCGTTATTGTTGGATGTCTTCAAAAAATCCATACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTCAATACTGTAACCCTTATCAATGATAGTAACAGCTTCATGCAAAACCATCCATTTCGGAGAATTCGTAGTGGCGGGAGATTTCAAAAAATCCATACAAATATCAAGAAATTCCAAGAAGGCTTTTGGATTTTCAGACATTTTGAGAGCATTTTGAATATTTCGAATGGCTTGCATCGAAATTGGTCCACCTACATAATCCGGATCTTCGTATTTCTTATTTTTTCGAATTAAAGTATACAAAGTGTGTTTGTAGGAACTACTTTTGACTGCAAAGTTCATAATAGTCTTCAATTCGAAAAGTATCAATCGTTTCTCCATCAAATCCGCTTCATTCTCAATCATTCGATCAATAATTGGGGGCGGAGTCTGTAGAATTTGAATTCCCAAATAGTTTGAGGTCTTGTTGGGAGAATCCATTGGCCAGTTTCAATTAGAGTTTTGATATCTTCAAAACTCGCATTTCCCTCAAATTTCTCGACAGATCGATCGATAAATTCAAATTTGAGTACTTCGTTATTGTTGGATGTCTTCAAAAAATCCATACAAATCTCCAAAAATTCCACAACAGTCAAGGGATTTTTAGAATTCTTGAAAACTTCCCGAATATTGTCGATTGCTTTTTCGGAAACGTTTCCACCAATATTTGTTGGATTTCTTAAATTTTTTTCAACAATTTTCACCAATTCGTATTTGAAGTATTGTGTTGGGGACCATGAGAGAATTGTTGCCACAGATTCCAGCACGATTTTTTGCTCTGAATTAGTAGCTTGATTGGCAATCAATCGATCGATTATCGATTTTTCGGGACGGACGCTTGACAACCCAATCAGTAGTAAGAGGGTTGGGACTCCTGAAAATTCAAAAATGTGTACCTAAAAAATGCTGAAAGGACAAACCTCTCATTTTGTGATGCTTCTTCTAGGAGAAGGGGAAGAAGTTTTCAAACTGATTCGATTTACCTACTCTCCGCTTTTTAGGGTATTTTTCGTACAGAA</canonical>
            <polymorphic>TCCTCAATACTGTAACCCTTATCAATGATAGTAACAGCTTCATGCAAAACCATCCATTTCGGAGAATTCGTAGTGGCGGGAGATTTCAAAAAATCCATACAAATATCAAGAAATTCCAAGAAGGCTTTTGGATTTTCAGACATTTTGAGAGCATTTTGAATATTTCGAATGGCTTGCATCGAAATTGGTCCACCTACATAATCCGGATCTTCGTATTTCTTATTTTTTCGAATTAAAGTATACAAAGTGTGTTTGTAGGAACTACTTTTGACTGCAAAGTTCATAATAGTCTTCAATTCGAAAAGTATCAATCGTTTCTCCATCAAATCCGCTTCATTCTCAATCATTCGATCAATAATTGGGGGCGGAGTCTGTAGAATTTGAATTCCCAAATAGTTTGAGGTCTTGTTGGGAGAATCCATTGGCCAGTTTCAATTAGAGTTTTGATATCTTCAAAACTCGCATTTCCCTCAAATTTCTCGACAGATCGATCGATAAAWTCAAATTTGAGTACTTCGTTATTGTTGGATGTCTTCAAAAAATCCATACAAATCTCCAAAAATTCCACAACAGTCAAGGGATTTTTAGAATTCTTGAAAACTTCCCGAATATTGTCGATTGCTTTTTCGGAAACGTTTCCACCAATATTTGTTGGATTTCTTAAATTTTTTTCAACAATTTTCACCAATTCGTATTTGAAGTATTGTGTTGGGGACCATGAGAGAATTGTTGCCACAGATTCCAGCACGATTTTTTGCTCTGAATTAGTAGCTTGATTGGCAATCAATCGATCGATTATCGATTTTTCGGGACGGACGCTTGACAACCCAATCAGTAGTAAGAGGGTTGGGACTCCTGAAAATTCAAAAATGTGTACCTAAAAAATGCTGAAAGGACAAACCTCTCATTTTGTGATGCTTCTTCTAGGAGAAGGGGAAGAAGTTTTCAAACTGATTCGATTTACCTACTCTCCGCTTTTTAGGGTATTTTTCGTACAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>266 197 140 90 75 64 57 47 28 24 6 6</canonical_bands>
                <polymorphic_bands>266 197 140 90 75 64 57 47 30 28 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>140 98 75 71 64 64 62 57 50 48 47 40 38 38 28 24 21 13 10 6 6</canonical_bands>
                <polymorphic_bands>140 98 75 71 64 64 62 57 50 48 47 40 38 38 30 28 21 13 10 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGGAGTCTGTAGAATTTGA</pcr_primer_p1>
		<pcr_primer_p2>AATATTCGGGAAGTTTTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCGGAGTCTGTAGAATTTGAATTCCCAAATAGTTTGAGGTCTTGTTGGGAGAATCCATTGGCCAGTTTCAATTAGAGTTTTGATATCTTCAAAACTCGCATTTCCCTCAAATTTCTCGACAGATCGATCGATAAATTCAAATTTGAGTACTTCGTTATTGTTGGATGTCTTCAAAAAATCCATACAAATCTCCAAAAATTCCACAACAGTCAAGGGATTTTTAGAATTCTTGAAAACTTCCCGAATATT</canonical_amplicon>
		<polymorphic_amplicon>GCGGAGTCTGTAGAATTTGAATTCCCAAATAGTTTGAGGTCTTGTTGGGAGAATCCATTGGCCAGTTTCAATTAGAGTTTTGATATCTTCAAAACTCGCATTTCCCTCAAATTTCTCGACAGATCGATCGATAAAWTCAAATTTGAGTACTTCGTTATTGTTGGATGTCTTCAAAAAATCCATACAAATCTCCAAAAATTCCACAACAGTCAAGGGATTTTTAGAATTCTTGAAAACTTCCCGAATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33544</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>67638</contig_pos>
        <strand>-</strand>
        <context>CAAATTTGAG[A/G]ACTTCGTTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCATTTCCCTCAAATTTCTCGACAGATCGATCGATAAATTCAAATTTGAG</left_flank>
        <right_flank>ACTTCGTTATTGTTGGATGTCTTCAAAAAATCCATACAAATCTCCAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACCCTTATCAATGATAGTAACAGCTTCATGCAAAACCATCCATTTCGGAGAATTCGTAGTGGCGGGAGATTTCAAAAAATCCATACAAATATCAAGAAATTCCAAGAAGGCTTTTGGATTTTCAGACATTTTGAGAGCATTTTGAATATTTCGAATGGCTTGCATCGAAATTGGTCCACCTACATAATCCGGATCTTCGTATTTCTTATTTTTTCGAATTAAAGTATACAAAGTGTGTTTGTAGGAACTACTTTTGACTGCAAAGTTCATAATAGTCTTCAATTCGAAAAGTATCAATCGTTTCTCCATCAAATCCGCTTCATTCTCAATCATTCGATCAATAATTGGGGGCGGAGTCTGTAGAATTTGAATTCCCAAATAGTTTGAGGTCTTGTTGGGAGAATCCATTGGCCAGTTTCAATTAGAGTTTTGATATCTTCAAAACTCGCATTTCCCTCAAATTTCTCGACAGATCGATCGATAAATTCAAATTTGAGTACTTCGTTATTGTTGGATGTCTTCAAAAAATCCATACAAATCTCCAAAAATTCCACAACAGTCAAGGGATTTTTAGAATTCTTGAAAACTTCCCGAATATTGTCGATTGCTTTTTCGGAAACGTTTCCACCAATATTTGTTGGATTTCTTAAATTTTTTTCAACAATTTTCACCAATTCGTATTTGAAGTATTGTGTTGGGGACCATGAGAGAATTGTTGCCACAGATTCCAGCACGATTTTTTGCTCTGAATTAGTAGCTTGATTGGCAATCAATCGATCGATTATCGATTTTTCGGGACGGACGCTTGACAACCCAATCAGTAGTAAGAGGGTTGGGACTCCTGAAAATTCAAAAATGTGTACCTAAAAAATGCTGAAAGGACAAACCTCTCATTTTGTGATGCTTCTTCTAGGAGAAGGGGAAGAAGTTTTCAAACTGATTCGATTTACCTACTCTCCGCTTTTTAGGGTATTTTTCGTACAGAAAAAAAAACTGGT</canonical>
            <polymorphic>TAACCCTTATCAATGATAGTAACAGCTTCATGCAAAACCATCCATTTCGGAGAATTCGTAGTGGCGGGAGATTTCAAAAAATCCATACAAATATCAAGAAATTCCAAGAAGGCTTTTGGATTTTCAGACATTTTGAGAGCATTTTGAATATTTCGAATGGCTTGCATCGAAATTGGTCCACCTACATAATCCGGATCTTCGTATTTCTTATTTTTTCGAATTAAAGTATACAAAGTGTGTTTGTAGGAACTACTTTTGACTGCAAAGTTCATAATAGTCTTCAATTCGAAAAGTATCAATCGTTTCTCCATCAAATCCGCTTCATTCTCAATCATTCGATCAATAATTGGGGGCGGAGTCTGTAGAATTTGAATTCCCAAATAGTTTGAGGTCTTGTTGGGAGAATCCATTGGCCAGTTTCAATTAGAGTTTTGATATCTTCAAAACTCGCATTTCCCTCAAATTTCTCGACAGATCGATCGATAAATTCAAATTTGAGRACTTCGTTATTGTTGGATGTCTTCAAAAAATCCATACAAATCTCCAAAAATTCCACAACAGTCAAGGGATTTTTAGAATTCTTGAAAACTTCCCGAATATTGTCGATTGCTTTTTCGGAAACGTTTCCACCAATATTTGTTGGATTTCTTAAATTTTTTTCAACAATTTTCACCAATTCGTATTTGAAGTATTGTGTTGGGGACCATGAGAGAATTGTTGCCACAGATTCCAGCACGATTTTTTGCTCTGAATTAGTAGCTTGATTGGCAATCAATCGATCGATTATCGATTTTTCGGGACGGACGCTTGACAACCCAATCAGTAGTAAGAGGGTTGGGACTCCTGAAAATTCAAAAATGTGTACCTAAAAAATGCTGAAAGGACAAACCTCTCATTTTGTGATGCTTCTTCTAGGAGAAGGGGAAGAAGTTTTCAAACTGATTCGATTTACCTACTCTCCGCTTTTTAGGGTATTTTTCGTACAGAAAAAAAAACTGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGTACT</site>
                <isoschizomers>
                    <enzyme>Acc113I</enzyme>
                    <enzyme>ScaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 363 119 18</canonical_bands>
                <polymorphic_bands>863 119 18</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGGAGTCTGTAGAATTTGA</pcr_primer_p1>
		<pcr_primer_p2>AATATTCGGGAAGTTTTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCGGAGTCTGTAGAATTTGAATTCCCAAATAGTTTGAGGTCTTGTTGGGAGAATCCATTGGCCAGTTTCAATTAGAGTTTTGATATCTTCAAAACTCGCATTTCCCTCAAATTTCTCGACAGATCGATCGATAAATTCAAATTTGAGTACTTCGTTATTGTTGGATGTCTTCAAAAAATCCATACAAATCTCCAAAAATTCCACAACAGTCAAGGGATTTTTAGAATTCTTGAAAACTTCCCGAATATT</canonical_amplicon>
		<polymorphic_amplicon>GCGGAGTCTGTAGAATTTGAATTCCCAAATAGTTTGAGGTCTTGTTGGGAGAATCCATTGGCCAGTTTCAATTAGAGTTTTGATATCTTCAAAACTCGCATTTCCCTCAAATTTCTCGACAGATCGATCGATAAATTCAAATTTGAGRACTTCGTTATTGTTGGATGTCTTCAAAAAATCCATACAAATCTCCAAAAATTCCACAACAGTCAAGGGATTTTTAGAATTCTTGAAAACTTCCCGAATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33545</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>67674</contig_pos>
        <strand>-</strand>
        <context>AAAAATCCAT[C/T]CAAATCTCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTCAAATTTGAGTACTTCGTTATTGTTGGATGTCTTCAAAAAATCCAT</left_flank>
        <right_flank>CAAATCTCCAAAAATTCCACAACAGTCAAGGGATTTTTAGAATTCTTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCATCCATTTCGGAGAATTCGTAGTGGCGGGAGATTTCAAAAAATCCATACAAATATCAAGAAATTCCAAGAAGGCTTTTGGATTTTCAGACATTTTGAGAGCATTTTGAATATTTCGAATGGCTTGCATCGAAATTGGTCCACCTACATAATCCGGATCTTCGTATTTCTTATTTTTTCGAATTAAAGTATACAAAGTGTGTTTGTAGGAACTACTTTTGACTGCAAAGTTCATAATAGTCTTCAATTCGAAAAGTATCAATCGTTTCTCCATCAAATCCGCTTCATTCTCAATCATTCGATCAATAATTGGGGGCGGAGTCTGTAGAATTTGAATTCCCAAATAGTTTGAGGTCTTGTTGGGAGAATCCATTGGCCAGTTTCAATTAGAGTTTTGATATCTTCAAAACTCGCATTTCCCTCAAATTTCTCGACAGATCGATCGATAAATTCAAATTTGAGTACTTCGTTATTGTTGGATGTCTTCAAAAAATCCATACAAATCTCCAAAAATTCCACAACAGTCAAGGGATTTTTAGAATTCTTGAAAACTTCCCGAATATTGTCGATTGCTTTTTCGGAAACGTTTCCACCAATATTTGTTGGATTTCTTAAATTTTTTTCAACAATTTTCACCAATTCGTATTTGAAGTATTGTGTTGGGGACCATGAGAGAATTGTTGCCACAGATTCCAGCACGATTTTTTGCTCTGAATTAGTAGCTTGATTGGCAATCAATCGATCGATTATCGATTTTTCGGGACGGACGCTTGACAACCCAATCAGTAGTAAGAGGGTTGGGACTCCTGAAAATTCAAAAATGTGTACCTAAAAAATGCTGAAAGGACAAACCTCTCATTTTGTGATGCTTCTTCTAGGAGAAGGGGAAGAAGTTTTCAAACTGATTCGATTTACCTACTCTCCGCTTTTTAGGGTATTTTTCGTACAGAAAAAAAAACTGGTTCATGGTAACACAAATGAAAAAATAGGACGATATTG</canonical>
            <polymorphic>ACCATCCATTTCGGAGAATTCGTAGTGGCGGGAGATTTCAAAAAATCCATACAAATATCAAGAAATTCCAAGAAGGCTTTTGGATTTTCAGACATTTTGAGAGCATTTTGAATATTTCGAATGGCTTGCATCGAAATTGGTCCACCTACATAATCCGGATCTTCGTATTTCTTATTTTTTCGAATTAAAGTATACAAAGTGTGTTTGTAGGAACTACTTTTGACTGCAAAGTTCATAATAGTCTTCAATTCGAAAAGTATCAATCGTTTCTCCATCAAATCCGCTTCATTCTCAATCATTCGATCAATAATTGGGGGCGGAGTCTGTAGAATTTGAATTCCCAAATAGTTTGAGGTCTTGTTGGGAGAATCCATTGGCCAGTTTCAATTAGAGTTTTGATATCTTCAAAACTCGCATTTCCCTCAAATTTCTCGACAGATCGATCGATAAATTCAAATTTGAGTACTTCGTTATTGTTGGATGTCTTCAAAAAATCCATYCAAATCTCCAAAAATTCCACAACAGTCAAGGGATTTTTAGAATTCTTGAAAACTTCCCGAATATTGTCGATTGCTTTTTCGGAAACGTTTCCACCAATATTTGTTGGATTTCTTAAATTTTTTTCAACAATTTTCACCAATTCGTATTTGAAGTATTGTGTTGGGGACCATGAGAGAATTGTTGCCACAGATTCCAGCACGATTTTTTGCTCTGAATTAGTAGCTTGATTGGCAATCAATCGATCGATTATCGATTTTTCGGGACGGACGCTTGACAACCCAATCAGTAGTAAGAGGGTTGGGACTCCTGAAAATTCAAAAATGTGTACCTAAAAAATGCTGAAAGGACAAACCTCTCATTTTGTGATGCTTCTTCTAGGAGAAGGGGAAGAAGTTTTCAAACTGATTCGATTTACCTACTCTCCGCTTTTTAGGGTATTTTTCGTACAGAAAAAAAAACTGGTTCATGGTAACACAAATGAAAAAATAGGACGATATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGGAGTCTGTAGAATTTGA</pcr_primer_p1>
		<pcr_primer_p2>AATATTCGGGAAGTTTTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCGGAGTCTGTAGAATTTGAATTCCCAAATAGTTTGAGGTCTTGTTGGGAGAATCCATTGGCCAGTTTCAATTAGAGTTTTGATATCTTCAAAACTCGCATTTCCCTCAAATTTCTCGACAGATCGATCGATAAATTCAAATTTGAGTACTTCGTTATTGTTGGATGTCTTCAAAAAATCCATACAAATCTCCAAAAATTCCACAACAGTCAAGGGATTTTTAGAATTCTTGAAAACTTCCCGAATATT</canonical_amplicon>
		<polymorphic_amplicon>GCGGAGTCTGTAGAATTTGAATTCCCAAATAGTTTGAGGTCTTGTTGGGAGAATCCATTGGCCAGTTTCAATTAGAGTTTTGATATCTTCAAAACTCGCATTTCCCTCAAATTTCTCGACAGATCGATCGATAAATTCAAATTTGAGTACTTCGTTATTGTTGGATGTCTTCAAAAAATCCATYCAAATCTCCAAAAATTCCACAACAGTCAAGGGATTTTTAGAATTCTTGAAAACTTCCCGAATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33546</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>72684</contig_pos>
        <strand>+</strand>
        <context>ATGTTTTTTT[A/T]TTAAGTCTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTTCATATGGAGATTACTGTAGTGAACGATGAACTAGAAATGTTTTTTT</left_flank>
        <right_flank>TTAAGTCTTAATTGGGACCCGAATTTCGACGGTTGGCTAATTCCAGAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTTGATTTCATCGGTCCCATTTTTCAGAAACCCCAGATGATAGCACTACGAAGCTACCATCGACGAAAAGTTGAAAAGGTTCCGATGTGGAAACTAGGCGTGCAGACAACTTCAAAATTAGTAGAACTTCTCAAAATATGGCTCATTTGCAGAAATAAATGTTTTAGAAAGAAAATTGATTTTAAATATGAATTTGTTTCGAAAATTCTACTTTAGCTATCCAATTTTCGTCTCCCCTCCCTTCCCCCTCGCCGCTCCCCGTTTCCGCCACCCTCCTCTACGCCATCACTCTCCTCTCTCCTCGTTGCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTGGATTCTTTTTTGTTTTGCTTTTTTAGGGATTTTAGGGGTCTAAATAAGATTTTCAGCCATTTGTTAGTTCATATGGAGATTACTGTAGTGAACGATGAACTAGAAATGTTTTTTTTTTAAGTCTTAATTGGGACCCGAATTTCGACGGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTGCTCCATTGAAATTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATATGAAATCACCTGATTTTTTCCATTAATTTTTGATTATTTCTGAA</canonical>
            <polymorphic>AATTTTTGATTTCATCGGTCCCATTTTTCAGAAACCCCAGATGATAGCACTACGAAGCTACCATCGACGAAAAGTTGAAAAGGTTCCGATGTGGAAACTAGGCGTGCAGACAACTTCAAAATTAGTAGAACTTCTCAAAATATGGCTCATTTGCAGAAATAAATGTTTTAGAAAGAAAATTGATTTTAAATATGAATTTGTTTCGAAAATTCTACTTTAGCTATCCAATTTTCGTCTCCCCTCCCTTCCCCCTCGCCGCTCCCCGTTTCCGCCACCCTCCTCTACGCCATCACTCTCCTCTCTCCTCGTTGCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTGGATTCTTTTTTGTTTTGCTTTTTTAGGGATTTTAGGGGTCTAAATAAGATTTTCAGCCATTTGTTAGTTCATATGGAGATTACTGTAGTGAACGATGAACTAGAAATGTTTTTTTWTTAAGTCTTAATTGGGACCCGAATTTCGACGGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTGCTCCATTGAAATTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATATGAAATCACCTGATTTTTTCCATTAATTTTTGATTATTTCTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAGCGTGAGACTTTTAATCTT</pcr_primer_p1>
		<pcr_primer_p2>CACGACGTTTCTGGAATTAG</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>TAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTGGATTCTTTTTTGTTTTGCTTTTTTAGGGATTTTAGGGGTCTAAATAAGATTTTCAGCCATTTGTTAGTTCATATGGAGATTACTGTAGTGAACGATGAACTAGAAATGTTTTTTTTTTAAGTCTTAATTGGGACCCGAATTTCGACGGTTGGCTAATTCCAGAAACGTCGTG</canonical_amplicon>
		<polymorphic_amplicon>TAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTGGATTCTTTTTTGTTTTGCTTTTTTAGGGATTTTAGGGGTCTAAATAAGATTTTCAGCCATTTGTTAGTTCATATGGAGATTACTGTAGTGAACGATGAACTAGAAATGTTTTTTTWTTAAGTCTTAATTGGGACCCGAATTTCGACGGTTGGCTAATTCCAGAAACGTCGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33547</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>72828</contig_pos>
        <strand></strand>
        <context>aaccatgacc[T/A]acttttctcg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACC</left_flank>
        <right_flank>ACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCATTTGCAGAAATAAATGTTTTAGAAAGAAAATTGATTTTAAATATGAATTTGTTTCGAAAATTCTACTTTAGCTATCCAATTTTCGTCTCCCCTCCCTTCCCCCTCGCCGCTCCCCGTTTCCGCCACCCTCCTCTACGCCATCACTCTCCTCTCTCCTCGTTGCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTGGATTCTTTTTTGTTTTGCTTTTTTAGGGATTTTAGGGGTCTAAATAAGATTTTCAGCCATTTGTTAGTTCATATGGAGATTACTGTAGTGAACGATGAACTAGAAATGTTTTTTTTTTAAGTCTTAATTGGGACCCGAATTTCGACGGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTGCTCCATTGAAATTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATATGAAATCACCTGATTTTTTCCATTAATTTTTGATTATTTCTGAAAAAAAAAATTTCAGAAAAAAATTTATTTTCAGATTTTTTTTTGAAAATGCGACTCTACATTTTGTCCTACTTAAATGATAATTCCAGTGAATACAGTAATTTGTCTGGAAATTTGTCTGAAAATTCTGGAAATTCTGGAAATTC</canonical>
            <polymorphic>GCTCATTTGCAGAAATAAATGTTTTAGAAAGAAAATTGATTTTAAATATGAATTTGTTTCGAAAATTCTACTTTAGCTATCCAATTTTCGTCTCCCCTCCCTTCCCCCTCGCCGCTCCCCGTTTCCGCCACCCTCCTCTACGCCATCACTCTCCTCTCTCCTCGTTGCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTGGATTCTTTTTTGTTTTGCTTTTTTAGGGATTTTAGGGGTCTAAATAAGATTTTCAGCCATTTGTTAGTTCATATGGAGATTACTGTAGTGAACGATGAACTAGAAATGTTTTTTTTTTAAGTCTTAATTGGGACCCGAATTTCGACGGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCWACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTGCTCCATTGAAATTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATATGAAATCACCTGATTTTTTCCATTAATTTTTGATTATTTCTGAAAAAAAAAATTTCAGAAAAAAATTTATTTTCAGATTTTTTTTTGAAAATGCGACTCTACATTTTGTCCTACTTAAATGATAATTCCAGTGAATACAGTAATTTGTCTGGAAATTTGTCTGAAAATTCTGGAAATTCTGGAAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTGGCTAATTCCAGAAAC</pcr_primer_p1>
		<pcr_primer_p2>AAATCAAGGATTACGGTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>344</pcr_amplicon_size>
		<canonical_amplicon>GGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCWACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33548</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>72871</contig_pos>
        <strand></strand>
        <context>catgcgcctt[C/T]aaaccgaaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTT</left_flank>
        <right_flank>AAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATATGAATTTGTTTCGAAAATTCTACTTTAGCTATCCAATTTTCGTCTCCCCTCCCTTCCCCCTCGCCGCTCCCCGTTTCCGCCACCCTCCTCTACGCCATCACTCTCCTCTCTCCTCGTTGCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTGGATTCTTTTTTGTTTTGCTTTTTTAGGGATTTTAGGGGTCTAAATAAGATTTTCAGCCATTTGTTAGTTCATATGGAGATTACTGTAGTGAACGATGAACTAGAAATGTTTTTTTTTTAAGTCTTAATTGGGACCCGAATTTCGACGGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTGCTCCATTGAAATTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATATGAAATCACCTGATTTTTTCCATTAATTTTTGATTATTTCTGAAAAAAAAAATTTCAGAAAAAAATTTATTTTCAGATTTTTTTTTGAAAATGCGACTCTACATTTTGTCCTACTTAAATGATAATTCCAGTGAATACAGTAATTTGTCTGGAAATTTGTCTGAAAATTCTGGAAATTCTGGAAATTCCACAGGAACTGAAAATCTACTAATGAAATTTGACAATTTCGAA</canonical>
            <polymorphic>AAATATGAATTTGTTTCGAAAATTCTACTTTAGCTATCCAATTTTCGTCTCCCCTCCCTTCCCCCTCGCCGCTCCCCGTTTCCGCCACCCTCCTCTACGCCATCACTCTCCTCTCTCCTCGTTGCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTGGATTCTTTTTTGTTTTGCTTTTTTAGGGATTTTAGGGGTCTAAATAAGATTTTCAGCCATTTGTTAGTTCATATGGAGATTACTGTAGTGAACGATGAACTAGAAATGTTTTTTTTTTAAGTCTTAATTGGGACCCGAATTTCGACGGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTYAAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTGCTCCATTGAAATTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATATGAAATCACCTGATTTTTTCCATTAATTTTTGATTATTTCTGAAAAAAAAAATTTCAGAAAAAAATTTATTTTCAGATTTTTTTTTGAAAATGCGACTCTACATTTTGTCCTACTTAAATGATAATTCCAGTGAATACAGTAATTTGTCTGGAAATTTGTCTGAAAATTCTGGAAATTCTGGAAATTCCACAGGAACTGAAAATCTACTAATGAAATTTGACAATTTCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTGGCTAATTCCAGAAAC</pcr_primer_p1>
		<pcr_primer_p2>AAATCAAGGATTACGGTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>344</pcr_amplicon_size>
		<canonical_amplicon>GGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTYAAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33549</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>72892</contig_pos>
        <strand></strand>
        <context>tctcaaagtg[A/G]acgtagccta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTG</left_flank>
        <right_flank>ACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTACTTTAGCTATCCAATTTTCGTCTCCCCTCCCTTCCCCCTCGCCGCTCCCCGTTTCCGCCACCCTCCTCTACGCCATCACTCTCCTCTCTCCTCGTTGCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTGGATTCTTTTTTGTTTTGCTTTTTTAGGGATTTTAGGGGTCTAAATAAGATTTTCAGCCATTTGTTAGTTCATATGGAGATTACTGTAGTGAACGATGAACTAGAAATGTTTTTTTTTTAAGTCTTAATTGGGACCCGAATTTCGACGGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTGCTCCATTGAAATTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATATGAAATCACCTGATTTTTTCCATTAATTTTTGATTATTTCTGAAAAAAAAAATTTCAGAAAAAAATTTATTTTCAGATTTTTTTTTGAAAATGCGACTCTACATTTTGTCCTACTTAAATGATAATTCCAGTGAATACAGTAATTTGTCTGGAAATTTGTCTGAAAATTCTGGAAATTCTGGAAATTCCACAGGAACTGAAAATCTACTAATGAAATTTGACAATTTCGAACAATTCCTGAATTTCTATAAT</canonical>
            <polymorphic>ATTCTACTTTAGCTATCCAATTTTCGTCTCCCCTCCCTTCCCCCTCGCCGCTCCCCGTTTCCGCCACCCTCCTCTACGCCATCACTCTCCTCTCTCCTCGTTGCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTGGATTCTTTTTTGTTTTGCTTTTTTAGGGATTTTAGGGGTCTAAATAAGATTTTCAGCCATTTGTTAGTTCATATGGAGATTACTGTAGTGAACGATGAACTAGAAATGTTTTTTTTTTAAGTCTTAATTGGGACCCGAATTTCGACGGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTGRACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTGCTCCATTGAAATTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATATGAAATCACCTGATTTTTTCCATTAATTTTTGATTATTTCTGAAAAAAAAAATTTCAGAAAAAAATTTATTTTCAGATTTTTTTTTGAAAATGCGACTCTACATTTTGTCCTACTTAAATGATAATTCCAGTGAATACAGTAATTTGTCTGGAAATTTGTCTGAAAATTCTGGAAATTCTGGAAATTCCACAGGAACTGAAAATCTACTAATGAAATTTGACAATTTCGAACAATTCCTGAATTTCTATAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTGGCTAATTCCAGAAAC</pcr_primer_p1>
		<pcr_primer_p2>AAATCAAGGATTACGGTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>344</pcr_amplicon_size>
		<canonical_amplicon>GGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTGRACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33550</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>72957</contig_pos>
        <strand></strand>
        <context>aatatgtaac[T/C]aaaatraata</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAAC</left_flank>
        <right_flank>AAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCCTCCTCTACGCCATCACTCTCCTCTCTCCTCGTTGCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTGGATTCTTTTTTGTTTTGCTTTTTTAGGGATTTTAGGGGTCTAAATAAGATTTTCAGCCATTTGTTAGTTCATATGGAGATTACTGTAGTGAACGATGAACTAGAAATGTTTTTTTTTTAAGTCTTAATTGGGACCCGAATTTCGACGGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTGCTCCATTGAAATTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATATGAAATCACCTGATTTTTTCCATTAATTTTTGATTATTTCTGAAAAAAAAAATTTCAGAAAAAAATTTATTTTCAGATTTTTTTTTGAAAATGCGACTCTACATTTTGTCCTACTTAAATGATAATTCCAGTGAATACAGTAATTTGTCTGGAAATTTGTCTGAAAATTCTGGAAATTCTGGAAATTCCACAGGAACTGAAAATCTACTAATGAAATTTGACAATTTCGAACAATTCCTGAATTTCTATAATTTTTTGGGGTTCCTGTTGATTTTTGCGGGTCTTTATGGTTACAAAATTTACAAAGAACAGTTTTT</canonical>
            <polymorphic>ACCCTCCTCTACGCCATCACTCTCCTCTCTCCTCGTTGCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTGGATTCTTTTTTGTTTTGCTTTTTTAGGGATTTTAGGGGTCTAAATAAGATTTTCAGCCATTTGTTAGTTCATATGGAGATTACTGTAGTGAACGATGAACTAGAAATGTTTTTTTTTTAAGTCTTAATTGGGACCCGAATTTCGACGGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACYAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTGCTCCATTGAAATTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATATGAAATCACCTGATTTTTTCCATTAATTTTTGATTATTTCTGAAAAAAAAAATTTCAGAAAAAAATTTATTTTCAGATTTTTTTTTGAAAATGCGACTCTACATTTTGTCCTACTTAAATGATAATTCCAGTGAATACAGTAATTTGTCTGGAAATTTGTCTGAAAATTCTGGAAATTCTGGAAATTCCACAGGAACTGAAAATCTACTAATGAAATTTGACAATTTCGAACAATTCCTGAATTTCTATAATTTTTTGGGGTTCCTGTTGATTTTTGCGGGTCTTTATGGTTACAAAATTTACAAAGAACAGTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTGGCTAATTCCAGAAAC</pcr_primer_p1>
		<pcr_primer_p2>AAATCAAGGATTACGGTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>344</pcr_amplicon_size>
		<canonical_amplicon>GGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACYAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33551</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>72963</contig_pos>
        <strand></strand>
        <context>taacyaaaat[G/A]aataaatatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAAT</left_flank>
        <right_flank>AATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTACGCCATCACTCTCCTCTCTCCTCGTTGCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTGGATTCTTTTTTGTTTTGCTTTTTTAGGGATTTTAGGGGTCTAAATAAGATTTTCAGCCATTTGTTAGTTCATATGGAGATTACTGTAGTGAACGATGAACTAGAAATGTTTTTTTTTTAAGTCTTAATTGGGACCCGAATTTCGACGGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTGCTCCATTGAAATTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATATGAAATCACCTGATTTTTTCCATTAATTTTTGATTATTTCTGAAAAAAAAAATTTCAGAAAAAAATTTATTTTCAGATTTTTTTTTGAAAATGCGACTCTACATTTTGTCCTACTTAAATGATAATTCCAGTGAATACAGTAATTTGTCTGGAAATTTGTCTGAAAATTCTGGAAATTCTGGAAATTCCACAGGAACTGAAAATCTACTAATGAAATTTGACAATTTCGAACAATTCCTGAATTTCTATAATTTTTTGGGGTTCCTGTTGATTTTTGCGGGTCTTTATGGTTACAAAATTTACAAAGAACAGTTTTTTGAATT</canonical>
            <polymorphic>CTCTACGCCATCACTCTCCTCTCTCCTCGTTGCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTGGATTCTTTTTTGTTTTGCTTTTTTAGGGATTTTAGGGGTCTAAATAAGATTTTCAGCCATTTGTTAGTTCATATGGAGATTACTGTAGTGAACGATGAACTAGAAATGTTTTTTTTTTAAGTCTTAATTGGGACCCGAATTTCGACGGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAATRAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTGCTCCATTGAAATTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATATGAAATCACCTGATTTTTTCCATTAATTTTTGATTATTTCTGAAAAAAAAAATTTCAGAAAAAAATTTATTTTCAGATTTTTTTTTGAAAATGCGACTCTACATTTTGTCCTACTTAAATGATAATTCCAGTGAATACAGTAATTTGTCTGGAAATTTGTCTGAAAATTCTGGAAATTCTGGAAATTCCACAGGAACTGAAAATCTACTAATGAAATTTGACAATTTCGAACAATTCCTGAATTTCTATAATTTTTTGGGGTTCCTGTTGATTTTTGCGGGTCTTTATGGTTACAAAATTTACAAAGAACAGTTTTTTGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTGGCTAATTCCAGAAAC</pcr_primer_p1>
		<pcr_primer_p2>AAATCAAGGATTACGGTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>344</pcr_amplicon_size>
		<canonical_amplicon>GGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAATRAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33552</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>73003</contig_pos>
        <strand>+</strand>
        <context>AGCAAAAAAA[A/T]CTTGATGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAACTAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAA</left_flank>
        <right_flank>CTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTGGATTCTTTTTTGTTTTGCTTTTTTAGGGATTTTAGGGGTCTAAATAAGATTTTCAGCCATTTGTTAGTTCATATGGAGATTACTGTAGTGAACGATGAACTAGAAATGTTTTTTTTTTAAGTCTTAATTGGGACCCGAATTTCGACGGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTGCTCCATTGAAATTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATATGAAATCACCTGATTTTTTCCATTAATTTTTGATTATTTCTGAAAAAAAAAATTTCAGAAAAAAATTTATTTTCAGATTTTTTTTTGAAAATGCGACTCTACATTTTGTCCTACTTAAATGATAATTCCAGTGAATACAGTAATTTGTCTGGAAATTTGTCTGAAAATTCTGGAAATTCTGGAAATTCCACAGGAACTGAAAATCTACTAATGAAATTTGACAATTTCGAACAATTCCTGAATTTCTATAATTTTTTGGGGTTCCTGTTGATTTTTGCGGGTCTTTATGGTTACAAAATTTACAAAGAACAGTTTTTTGAATTTTCGAATTTTCGAAAATTCCATATTTTCATGTATTGCTGT</canonical>
            <polymorphic>GCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTGGATTCTTTTTTGTTTTGCTTTTTTAGGGATTTTAGGGGTCTAAATAAGATTTTCAGCCATTTGTTAGTTCATATGGAGATTACTGTAGTGAACGATGAACTAGAAATGTTTTTTTTTTAAGTCTTAATTGGGACCCGAATTTCGACGGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAAWCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTGCTCCATTGAAATTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATATGAAATCACCTGATTTTTTCCATTAATTTTTGATTATTTCTGAAAAAAAAAATTTCAGAAAAAAATTTATTTTCAGATTTTTTTTTGAAAATGCGACTCTACATTTTGTCCTACTTAAATGATAATTCCAGTGAATACAGTAATTTGTCTGGAAATTTGTCTGAAAATTCTGGAAATTCTGGAAATTCCACAGGAACTGAAAATCTACTAATGAAATTTGACAATTTCGAACAATTCCTGAATTTCTATAATTTTTTGGGGTTCCTGTTGATTTTTGCGGGTCTTTATGGTTACAAAATTTACAAAGAACAGTTTTTTGAATTTTCGAATTTTCGAAAATTCCATATTTTCATGTATTGCTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>226 224 126 108 94 61 59 58 21 14 9</canonical_bands>
                <polymorphic_bands>226 224 126 120 108 94 58 21 14 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTGGCTAATTCCAGAAAC</pcr_primer_p1>
		<pcr_primer_p2>AAATCAAGGATTACGGTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>344</pcr_amplicon_size>
		<canonical_amplicon>GGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAAWCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33553</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>73183</contig_pos>
        <strand>+</strand>
        <context>ATTATTTCTG[A/T]AAAAAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGAAATATGAAATCACCTGATTTTTTCCATTAATTTTTGATTATTTCTG</left_flank>
        <right_flank>AAAAAAAAATTTCAGAAAAAAATTTATTTTCAGATTTTTTTTTGAAAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAAGTCTTAATTGGGACCCGAATTTCGACGGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTGCTCCATTGAAATTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATATGAAATCACCTGATTTTTTCCATTAATTTTTGATTATTTCTGAAAAAAAAAATTTCAGAAAAAAATTTATTTTCAGATTTTTTTTTGAAAATGCGACTCTACATTTTGTCCTACTTAAATGATAATTCCAGTGAATACAGTAATTTGTCTGGAAATTTGTCTGAAAATTCTGGAAATTCTGGAAATTCCACAGGAACTGAAAATCTACTAATGAAATTTGACAATTTCGAACAATTCCTGAATTTCTATAATTTTTTGGGGTTCCTGTTGATTTTTGCGGGTCTTTATGGTTACAAAATTTACAAAGAACAGTTTTTTGAATTTTCGAATTTTCGAAAATTCCATATTTTCATGTATTGCTGTATTTTCTCAATGGCTTTGATTATTTTCTACATTTTATACCCTATTGTTGAAGGTTTTTGGAAATGGATTACTGTATTTTTTGGTCTTGTAGTTCTGTTATCTCATTCTTTTATTATTTTGGCTCTGACGTTCTTGGATTTGGTTACGGTAGTTTTTGGAATGAGCAATCCTAGAAAAGTT</canonical>
            <polymorphic>TTTAAGTCTTAATTGGGACCCGAATTTCGACGGTTGGCTAATTCCAGAAACGTCGTGGACACTGAAAAACCCGATATTTTTCGTCAAAATTAAAGTTTTTGAGTTTAGGAGGTTGAGAGCTTCAAAATGAGTATAACCATGACCTACTTTTCTCGAATTCGATTTTTCACGGGGGTCCATGCGCCTTCAAACCGAAAATCTCAAAGTGAACGTAGCCTAAGCATGTTTATACTCATTTTGAAGCTCTTGACGAGCCTATCAAGAATATGTAACTAAAATGAATAAATATTGATTTTGAAGGGAGTTATGAGCAAAAAAATCTTGATGAAATTTGATGCTAAAAATTATAGTCTTTTTTACCGTAATCCTTGATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTGCTCCATTGAAATTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATATGAAATCACCTGATTTTTTCCATTAATTTTTGATTATTTCTGWAAAAAAAAATTTCAGAAAAAAATTTATTTTCAGATTTTTTTTTGAAAATGCGACTCTACATTTTGTCCTACTTAAATGATAATTCCAGTGAATACAGTAATTTGTCTGGAAATTTGTCTGAAAATTCTGGAAATTCTGGAAATTCCACAGGAACTGAAAATCTACTAATGAAATTTGACAATTTCGAACAATTCCTGAATTTCTATAATTTTTTGGGGTTCCTGTTGATTTTTGCGGGTCTTTATGGTTACAAAATTTACAAAGAACAGTTTTTTGAATTTTCGAATTTTCGAAAATTCCATATTTTCATGTATTGCTGTATTTTCTCAATGGCTTTGATTATTTTCTACATTTTATACCCTATTGTTGAAGGTTTTTGGAAATGGATTACTGTATTTTTTGGTCTTGTAGTTCTGTTATCTCATTCTTTTATTATTTTGGCTCTGACGTTCTTGGATTTGGTTACGGTAGTTTTTGGAATGAGCAATCCTAGAAAAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>498 326 87 55 18 16</canonical_bands>
                <polymorphic_bands>514 326 87 55 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCCCTCCAGAAAAGACTTA</pcr_primer_p1>
		<pcr_primer_p2>ACAAATTTCCAGACAAATTACTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTGCTCCATTGAAATTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATATGAAATCACCTGATTTTTTCCATTAATTTTTGATTATTTCTGAAAAAAAAAATTTCAGAAAAAAATTTATTTTCAGATTTTTTTTTGAAAATGCGACTCTACATTTTGTCCTACTTAAATGATAATTCCAGTGAATACAGTAATTTGTCTGGAAATTTGT</canonical_amplicon>
		<polymorphic_amplicon>ATTTCCCTCCAGAAAAGACTTACGCTTCGTCATGTGCTCCATTGAAATTCAAAGTGAATTTTCACCTGTTAACATTTACAGAAATATGAAATCACCTGATTTTTTCCATTAATTTTTGATTATTTCTGWAAAAAAAAATTTCAGAAAAAAATTTATTTTCAGATTTTTTTTTGAAAATGCGACTCTACATTTTGTCCTACTTAAATGATAATTCCAGTGAATACAGTAATTTGTCTGGAAATTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33554</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>95944</contig_pos>
        <strand>+</strand>
        <context>GACAGATTAT[C/T]TTGAAATTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATCACTGCTTACCATAGCGCATCTTGGAATCTTTGCGCTGACAGATTAT</left_flank>
        <right_flank>TTGAAATTTCAGTCTCAAATCACCTTCTGATCTCCACCGTCGTCATGTTC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAAAAGTAACTGGGTCAGAATCCAAGGAAAACAGGAAACTGTCCTGAAGTATCATCTGCAAGAACAGCGGGTTGAAATCTAAGATTTCATGGGTCCTTCCATTGCGAATGCACTAACGAATCCCAGCTCTTTTTCTCTTTGAACATTGCTCATCGATCGATTCCTTGAATTCGATTTTGTTCTGATCAATCCATTTTTTTCCAGCAGATTCTGTATTCCTTTTTGTCGCTGATTGGGAGCTACGTATCACATGGCGAATAGGAGACCAAGTCGGTGCTATGCTCTTGAAAGGTTTTTGATTGTCATTTTTTTTAGAAGATTTGTTGCTCATCTCCCATTGTCACAAGTGTTTTTTCTGGCTCCCCCGAGTTCGCGCTCAGAATTCAAAAACCCACTGGTTTTTAGTTACCATCTGTAATAGAAAGTACAGCCTTTTGGAACGTTGGGGATCACTGCTTACCATAGCGCATCTTGGAATCTTTGCGCTGACAGATTATTTTGAAATTTCAGTCTCAAATCACCTTCTGATCTCCACCGTCGTCATGTTCTGATTCCCTCCAACGCGCTTCTTTTGATTTGAAGTTCGTTCGCCGATCCTTTTCTGATGTGAAGCGCTCGAGCATATCTGTACCAGCAGTCTTCTCGCGATTGATGAGTTTTTGAATTTTTGGGCAATCCACACTCTCCAACGTCGGCTGGCTCTTCCGATCCCAAATTTTCGTAGAAATATGGGTACTTGAAGTGTCATCGCTTTCTTCGATTGTTTCAAATACTGATTTTAGATCGTTACCTTGACTGGAAAACACAACTCTCGACAATAAAAAAAAACACACGCACACACCTTGGCCGCAAAGACAAGGATTTGCTGACCTTTTTTCTTCGACTTTGAACGAATTTCCTGAAACAATTCAACTTTTGAACCGTGAAAACTCAAGCGAAACTCATATACCTGCTGTGTCGCTACGTTGCCGTGCTAGTGATCCATCGAAAAAAAGGAG</canonical>
            <polymorphic>CCAAAAAGTAACTGGGTCAGAATCCAAGGAAAACAGGAAACTGTCCTGAAGTATCATCTGCAAGAACAGCGGGTTGAAATCTAAGATTTCATGGGTCCTTCCATTGCGAATGCACTAACGAATCCCAGCTCTTTTTCTCTTTGAACATTGCTCATCGATCGATTCCTTGAATTCGATTTTGTTCTGATCAATCCATTTTTTTCCAGCAGATTCTGTATTCCTTTTTGTCGCTGATTGGGAGCTACGTATCACATGGCGAATAGGAGACCAAGTCGGTGCTATGCTCTTGAAAGGTTTTTGATTGTCATTTTTTTTAGAAGATTTGTTGCTCATCTCCCATTGTCACAAGTGTTTTTTCTGGCTCCCCCGAGTTCGCGCTCAGAATTCAAAAACCCACTGGTTTTTAGTTACCATCTGTAATAGAAAGTACAGCCTTTTGGAACGTTGGGGATCACTGCTTACCATAGCGCATCTTGGAATCTTTGCGCTGACAGATTATYTTGAAATTTCAGTCTCAAATCACCTTCTGATCTCCACCGTCGTCATGTTCTGATTCCCTCCAACGCGCTTCTTTTGATTTGAAGTTCGTTCGCCGATCCTTTTCTGATGTGAAGCGCTCGAGCATATCTGTACCAGCAGTCTTCTCGCGATTGATGAGTTTTTGAATTTTTGGGCAATCCACACTCTCCAACGTCGGCTGGCTCTTCCGATCCCAAATTTTCGTAGAAATATGGGTACTTGAAGTGTCATCGCTTTCTTCGATTGTTTCAAATACTGATTTTAGATCGTTACCTTGACTGGAAAACACAACTCTCGACAATAAAAAAAAACACACGCACACACCTTGGCCGCAAAGACAAGGATTTGCTGACCTTTTTTCTTCGACTTTGAACGAATTTCCTGAAACAATTCAACTTTTGAACCGTGAAAACTCAAGCGAAACTCATATACCTGCTGTGTCGCTACGTTGCCGTGCTAGTGATCCATCGAAAAAAAGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTGGTTTTTAGTTACCATCTG</pcr_primer_p1>
		<pcr_primer_p2>AAGACTGCTGGTACAGATATGC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CACTGGTTTTTAGTTACCATCTGTAATAGAAAGTACAGCCTTTTGGAACGTTGGGGATCACTGCTTACCATAGCGCATCTTGGAATCTTTGCGCTGACAGATTATTTTGAAATTTCAGTCTCAAATCACCTTCTGATCTCCACCGTCGTCATGTTCTGATTCCCTCCAACGCGCTTCTTTTGATTTGAAGTTCGTTCGCCGATCCTTTTCTGATGTGAAGCGCTCGAGCATATCTGTACCAGCAGTCTT</canonical_amplicon>
		<polymorphic_amplicon>CACTGGTTTTTAGTTACCATCTGTAATAGAAAGTACAGCCTTTTGGAACGTTGGGGATCACTGCTTACCATAGCGCATCTTGGAATCTTTGCGCTGACAGATTATYTTGAAATTTCAGTCTCAAATCACCTTCTGATCTCCACCGTCGTCATGTTCTGATTCCCTCCAACGCGCTTCTTTTGATTTGAAGTTCGTTCGCCGATCCTTTTCTGATGTGAAGCGCTCGAGCATATCTGTACCAGCAGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33555</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>96051</contig_pos>
        <strand>+</strand>
        <context>TCCTTTTCTG[A/G]TGTGAAGCGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTCCAACGCGCTTCTTTTGATTTGAAGTTCGTTCGCCGATCCTTTTCTG</left_flank>
        <right_flank>TGTGAAGCGCTCGAGCATATCTGTACCAGCAGTCTTCTCGCGATTGATGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATGCACTAACGAATCCCAGCTCTTTTTCTCTTTGAACATTGCTCATCGATCGATTCCTTGAATTCGATTTTGTTCTGATCAATCCATTTTTTTCCAGCAGATTCTGTATTCCTTTTTGTCGCTGATTGGGAGCTACGTATCACATGGCGAATAGGAGACCAAGTCGGTGCTATGCTCTTGAAAGGTTTTTGATTGTCATTTTTTTTAGAAGATTTGTTGCTCATCTCCCATTGTCACAAGTGTTTTTTCTGGCTCCCCCGAGTTCGCGCTCAGAATTCAAAAACCCACTGGTTTTTAGTTACCATCTGTAATAGAAAGTACAGCCTTTTGGAACGTTGGGGATCACTGCTTACCATAGCGCATCTTGGAATCTTTGCGCTGACAGATTATTTTGAAATTTCAGTCTCAAATCACCTTCTGATCTCCACCGTCGTCATGTTCTGATTCCCTCCAACGCGCTTCTTTTGATTTGAAGTTCGTTCGCCGATCCTTTTCTGATGTGAAGCGCTCGAGCATATCTGTACCAGCAGTCTTCTCGCGATTGATGAGTTTTTGAATTTTTGGGCAATCCACACTCTCCAACGTCGGCTGGCTCTTCCGATCCCAAATTTTCGTAGAAATATGGGTACTTGAAGTGTCATCGCTTTCTTCGATTGTTTCAAATACTGATTTTAGATCGTTACCTTGACTGGAAAACACAACTCTCGACAATAAAAAAAAACACACGCACACACCTTGGCCGCAAAGACAAGGATTTGCTGACCTTTTTTCTTCGACTTTGAACGAATTTCCTGAAACAATTCAACTTTTGAACCGTGAAAACTCAAGCGAAACTCATATACCTGCTGTGTCGCTACGTTGCCGTGCTAGTGATCCATCGAAAAAAAGGAGGGAAAATTTTTGAATGAGTTGGATAGTGAGAGCAGACTTTCCGAGTTCTTGAGCTTCAAGATTTCTTCTTTCGTTTCCTGATCGATTTTCGAGTTCTTACTGCTTCC</canonical>
            <polymorphic>GAATGCACTAACGAATCCCAGCTCTTTTTCTCTTTGAACATTGCTCATCGATCGATTCCTTGAATTCGATTTTGTTCTGATCAATCCATTTTTTTCCAGCAGATTCTGTATTCCTTTTTGTCGCTGATTGGGAGCTACGTATCACATGGCGAATAGGAGACCAAGTCGGTGCTATGCTCTTGAAAGGTTTTTGATTGTCATTTTTTTTAGAAGATTTGTTGCTCATCTCCCATTGTCACAAGTGTTTTTTCTGGCTCCCCCGAGTTCGCGCTCAGAATTCAAAAACCCACTGGTTTTTAGTTACCATCTGTAATAGAAAGTACAGCCTTTTGGAACGTTGGGGATCACTGCTTACCATAGCGCATCTTGGAATCTTTGCGCTGACAGATTATTTTGAAATTTCAGTCTCAAATCACCTTCTGATCTCCACCGTCGTCATGTTCTGATTCCCTCCAACGCGCTTCTTTTGATTTGAAGTTCGTTCGCCGATCCTTTTCTGRTGTGAAGCGCTCGAGCATATCTGTACCAGCAGTCTTCTCGCGATTGATGAGTTTTTGAATTTTTGGGCAATCCACACTCTCCAACGTCGGCTGGCTCTTCCGATCCCAAATTTTCGTAGAAATATGGGTACTTGAAGTGTCATCGCTTTCTTCGATTGTTTCAAATACTGATTTTAGATCGTTACCTTGACTGGAAAACACAACTCTCGACAATAAAAAAAAACACACGCACACACCTTGGCCGCAAAGACAAGGATTTGCTGACCTTTTTTCTTCGACTTTGAACGAATTTCCTGAAACAATTCAACTTTTGAACCGTGAAAACTCAAGCGAAACTCATATACCTGCTGTGTCGCTACGTTGCCGTGCTAGTGATCCATCGAAAAAAAGGAGGGAAAATTTTTGAATGAGTTGGATAGTGAGAGCAGACTTTCCGAGTTCTTGAGCTTCAAGATTTCTTCTTTCGTTTCCTGATCGATTTTCGAGTTCTTACTGCTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>334 196 147 103 78 65 54 23</canonical_bands>
                <polymorphic_bands>334 196 157 147 78 65 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAGTACAGCCTTTTGGAAC</pcr_primer_p1>
		<pcr_primer_p2>CAAAAATTCAAAAACTCATCAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAGTACAGCCTTTTGGAACGTTGGGGATCACTGCTTACCATAGCGCATCTTGGAATCTTTGCGCTGACAGATTATTTTGAAATTTCAGTCTCAAATCACCTTCTGATCTCCACCGTCGTCATGTTCTGATTCCCTCCAACGCGCTTCTTTTGATTTGAAGTTCGTTCGCCGATCCTTTTCTGATGTGAAGCGCTCGAGCATATCTGTACCAGCAGTCTTCTCGCGATTGATGAGTTTTTGAATTTTTG</canonical_amplicon>
		<polymorphic_amplicon>GAAAGTACAGCCTTTTGGAACGTTGGGGATCACTGCTTACCATAGCGCATCTTGGAATCTTTGCGCTGACAGATTATTTTGAAATTTCAGTCTCAAATCACCTTCTGATCTCCACCGTCGTCATGTTCTGATTCCCTCCAACGCGCTTCTTTTGATTTGAAGTTCGTTCGCCGATCCTTTTCTGRTGTGAAGCGCTCGAGCATATCTGTACCAGCAGTCTTCTCGCGATTGATGAGTTTTTGAATTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33556</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>96265</contig_pos>
        <strand>+</strand>
        <context>CTCTCGACAA[C/T]RAAAAAAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATACTGATTTTAGATCGTTACCTTGACTGGAAAACACAACTCTCGACAA</left_flank>
        <right_flank>AAAAAAAAACACACGCACACACCTTGGCCGCAAAGACAAGGATTTGCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGTTGCTCATCTCCCATTGTCACAAGTGTTTTTTCTGGCTCCCCCGAGTTCGCGCTCAGAATTCAAAAACCCACTGGTTTTTAGTTACCATCTGTAATAGAAAGTACAGCCTTTTGGAACGTTGGGGATCACTGCTTACCATAGCGCATCTTGGAATCTTTGCGCTGACAGATTATTTTGAAATTTCAGTCTCAAATCACCTTCTGATCTCCACCGTCGTCATGTTCTGATTCCCTCCAACGCGCTTCTTTTGATTTGAAGTTCGTTCGCCGATCCTTTTCTGATGTGAAGCGCTCGAGCATATCTGTACCAGCAGTCTTCTCGCGATTGATGAGTTTTTGAATTTTTGGGCAATCCACACTCTCCAACGTCGGCTGGCTCTTCCGATCCCAAATTTTCGTAGAAATATGGGTACTTGAAGTGTCATCGCTTTCTTCGATTGTTTCAAATACTGATTTTAGATCGTTACCTTGACTGGAAAACACAACTCTCGACAATAAAAAAAAACACACGCACACACCTTGGCCGCAAAGACAAGGATTTGCTGACCTTTTTTCTTCGACTTTGAACGAATTTCCTGAAACAATTCAACTTTTGAACCGTGAAAACTCAAGCGAAACTCATATACCTGCTGTGTCGCTACGTTGCCGTGCTAGTGATCCATCGAAAAAAAGGAGGGAAAATTTTTGAATGAGTTGGATAGTGAGAGCAGACTTTCCGAGTTCTTGAGCTTCAAGATTTCTTCTTTCGTTTCCTGATCGATTTTCGAGTTCTTACTGCTTCCGATGTTTTTTTTTAGCCTGCAAAAAACCGATTTTCAGCTGATTTCCCACCAGAAGAATTTCTCTACTTTCACAAAAGAGAACCTAGATTTGAAATTTGGCACCGAGTCAAGTTTGGAGGCGTCGCGTGTCTGCGTAGCGGTCGCCAGCTGAATCTCTTGCGGCTTTTCCATATTCTCACAGCTCTTTATCTGCAAAAGTATATTTATCATGGCT</canonical>
            <polymorphic>TTTGTTGCTCATCTCCCATTGTCACAAGTGTTTTTTCTGGCTCCCCCGAGTTCGCGCTCAGAATTCAAAAACCCACTGGTTTTTAGTTACCATCTGTAATAGAAAGTACAGCCTTTTGGAACGTTGGGGATCACTGCTTACCATAGCGCATCTTGGAATCTTTGCGCTGACAGATTATTTTGAAATTTCAGTCTCAAATCACCTTCTGATCTCCACCGTCGTCATGTTCTGATTCCCTCCAACGCGCTTCTTTTGATTTGAAGTTCGTTCGCCGATCCTTTTCTGATGTGAAGCGCTCGAGCATATCTGTACCAGCAGTCTTCTCGCGATTGATGAGTTTTTGAATTTTTGGGCAATCCACACTCTCCAACGTCGGCTGGCTCTTCCGATCCCAAATTTTCGTAGAAATATGGGTACTTGAAGTGTCATCGCTTTCTTCGATTGTTTCAAATACTGATTTTAGATCGTTACCTTGACTGGAAAACACAACTCTCGACAAYAAAAAAAAACACACGCACACACCTTGGCCGCAAAGACAAGGATTTGCTGACCTTTTTTCTTCGACTTTGAACGAATTTCCTGAAACAATTCAACTTTTGAACCGTGAAAACTCAAGCGAAACTCATATACCTGCTGTGTCGCTACGTTGCCGTGCTAGTGATCCATCGAAAAAAAGGAGGGAAAATTTTTGAATGAGTTGGATAGTGAGAGCAGACTTTCCGAGTTCTTGAGCTTCAAGATTTCTTCTTTCGTTTCCTGATCGATTTTCGAGTTCTTACTGCTTCCGATGTTTTTTTTTAGCCTGCAAAAAACCGATTTTCAGCTGATTTCCCACCAGAAGAATTTCTCTACTTTCACAAAAGAGAACCTAGATTTGAAATTTGGCACCGAGTCAAGTTTGGAGGCGTCGCGTGTCTGCGTAGCGGTCGCCAGCTGAATCTCTTGCGGCTTTTCCATATTCTCACAGCTCTTTATCTGCAAAAGTATATTTATCATGGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCGTAGAAATATGGGTACTTG</pcr_primer_p1>
		<pcr_primer_p2>GACACAGCAGGTATATGAGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTCGTAGAAATATGGGTACTTGAAGTGTCATCGCTTTCTTCGATTGTTTCAAATACTGATTTTAGATCGTTACCTTGACTGGAAAACACAACTCTCGACAATAAAAAAAAACACACGCACACACCTTGGCCGCAAAGACAAGGATTTGCTGACCTTTTTTCTTCGACTTTGAACGAATTTCCTGAAACAATTCAACTTTTGAACCGTGAAAACTCAAGCGAAACTCATATACCTGCTGTGTC</canonical_amplicon>
		<polymorphic_amplicon>TTTCGTAGAAATATGGGTACTTGAAGTGTCATCGCTTTCTTCGATTGTTTCAAATACTGATTTTAGATCGTTACCTTGACTGGAAAACACAACTCTCGACAAYAAAAAAAAACACACGCACACACCTTGGCCGCAAAGACAAGGATTTGCTGACCTTTTTTCTTCGACTTTGAACGAATTTCCTGAAACAATTCAACTTTTGAACCGTGAAAACTCAAGCGAAACTCATATACCTGCTGTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33557</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>96266</contig_pos>
        <strand>+</strand>
        <context>TCTCGACAAY[A/G]AAAAAAAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATACTGATTTTAGATCGTTACCTTGACTGGAAAACACAACTCTCGACAAT</left_flank>
        <right_flank>AAAAAAAACACACGCACACACCTTGGCCGCAAAGACAAGGATTTGCTGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTGCTCATCTCCCATTGTCACAAGTGTTTTTTCTGGCTCCCCCGAGTTCGCGCTCAGAATTCAAAAACCCACTGGTTTTTAGTTACCATCTGTAATAGAAAGTACAGCCTTTTGGAACGTTGGGGATCACTGCTTACCATAGCGCATCTTGGAATCTTTGCGCTGACAGATTATTTTGAAATTTCAGTCTCAAATCACCTTCTGATCTCCACCGTCGTCATGTTCTGATTCCCTCCAACGCGCTTCTTTTGATTTGAAGTTCGTTCGCCGATCCTTTTCTGATGTGAAGCGCTCGAGCATATCTGTACCAGCAGTCTTCTCGCGATTGATGAGTTTTTGAATTTTTGGGCAATCCACACTCTCCAACGTCGGCTGGCTCTTCCGATCCCAAATTTTCGTAGAAATATGGGTACTTGAAGTGTCATCGCTTTCTTCGATTGTTTCAAATACTGATTTTAGATCGTTACCTTGACTGGAAAACACAACTCTCGACAATAAAAAAAAACACACGCACACACCTTGGCCGCAAAGACAAGGATTTGCTGACCTTTTTTCTTCGACTTTGAACGAATTTCCTGAAACAATTCAACTTTTGAACCGTGAAAACTCAAGCGAAACTCATATACCTGCTGTGTCGCTACGTTGCCGTGCTAGTGATCCATCGAAAAAAAGGAGGGAAAATTTTTGAATGAGTTGGATAGTGAGAGCAGACTTTCCGAGTTCTTGAGCTTCAAGATTTCTTCTTTCGTTTCCTGATCGATTTTCGAGTTCTTACTGCTTCCGATGTTTTTTTTTAGCCTGCAAAAAACCGATTTTCAGCTGATTTCCCACCAGAAGAATTTCTCTACTTTCACAAAAGAGAACCTAGATTTGAAATTTGGCACCGAGTCAAGTTTGGAGGCGTCGCGTGTCTGCGTAGCGGTCGCCAGCTGAATCTCTTGCGGCTTTTCCATATTCTCACAGCTCTTTATCTGCAAAAGTATATTTATCATGGCTT</canonical>
            <polymorphic>TTGTTGCTCATCTCCCATTGTCACAAGTGTTTTTTCTGGCTCCCCCGAGTTCGCGCTCAGAATTCAAAAACCCACTGGTTTTTAGTTACCATCTGTAATAGAAAGTACAGCCTTTTGGAACGTTGGGGATCACTGCTTACCATAGCGCATCTTGGAATCTTTGCGCTGACAGATTATTTTGAAATTTCAGTCTCAAATCACCTTCTGATCTCCACCGTCGTCATGTTCTGATTCCCTCCAACGCGCTTCTTTTGATTTGAAGTTCGTTCGCCGATCCTTTTCTGATGTGAAGCGCTCGAGCATATCTGTACCAGCAGTCTTCTCGCGATTGATGAGTTTTTGAATTTTTGGGCAATCCACACTCTCCAACGTCGGCTGGCTCTTCCGATCCCAAATTTTCGTAGAAATATGGGTACTTGAAGTGTCATCGCTTTCTTCGATTGTTTCAAATACTGATTTTAGATCGTTACCTTGACTGGAAAACACAACTCTCGACAATRAAAAAAAACACACGCACACACCTTGGCCGCAAAGACAAGGATTTGCTGACCTTTTTTCTTCGACTTTGAACGAATTTCCTGAAACAATTCAACTTTTGAACCGTGAAAACTCAAGCGAAACTCATATACCTGCTGTGTCGCTACGTTGCCGTGCTAGTGATCCATCGAAAAAAAGGAGGGAAAATTTTTGAATGAGTTGGATAGTGAGAGCAGACTTTCCGAGTTCTTGAGCTTCAAGATTTCTTCTTTCGTTTCCTGATCGATTTTCGAGTTCTTACTGCTTCCGATGTTTTTTTTTAGCCTGCAAAAAACCGATTTTCAGCTGATTTCCCACCAGAAGAATTTCTCTACTTTCACAAAAGAGAACCTAGATTTGAAATTTGGCACCGAGTCAAGTTTGGAGGCGTCGCGTGTCTGCGTAGCGGTCGCCAGCTGAATCTCTTGCGGCTTTTCCATATTCTCACAGCTCTTTATCTGCAAAAGTATATTTATCATGGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCGTAGAAATATGGGTACTTG</pcr_primer_p1>
		<pcr_primer_p2>GACACAGCAGGTATATGAGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTCGTAGAAATATGGGTACTTGAAGTGTCATCGCTTTCTTCGATTGTTTCAAATACTGATTTTAGATCGTTACCTTGACTGGAAAACACAACTCTCGACAATAAAAAAAAACACACGCACACACCTTGGCCGCAAAGACAAGGATTTGCTGACCTTTTTTCTTCGACTTTGAACGAATTTCCTGAAACAATTCAACTTTTGAACCGTGAAAACTCAAGCGAAACTCATATACCTGCTGTGTC</canonical_amplicon>
		<polymorphic_amplicon>TTTCGTAGAAATATGGGTACTTGAAGTGTCATCGCTTTCTTCGATTGTTTCAAATACTGATTTTAGATCGTTACCTTGACTGGAAAACACAACTCTCGACAATRAAAAAAAACACACGCACACACCTTGGCCGCAAAGACAAGGATTTGCTGACCTTTTTTCTTCGACTTTGAACGAATTTCCTGAAACAATTCAACTTTTGAACCGTGAAAACTCAAGCGAAACTCATATACCTGCTGTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33558</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>96278</contig_pos>
        <strand></strand>
        <context>AAAAAAACAC[A/G]CGCACACACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATCGTTACCTTGACTGGAAAACACAACTCTCGACAATAAAAAAAAACAC</left_flank>
        <right_flank>CGCACACACCTTGGCCGCAAAGACAAGGATTTGCTGACCTTTTTTCTTCG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCCATTGTCACAAGTGTTTTTTCTGGCTCCCCCGAGTTCGCGCTCAGAATTCAAAAACCCACTGGTTTTTAGTTACCATCTGTAATAGAAAGTACAGCCTTTTGGAACGTTGGGGATCACTGCTTACCATAGCGCATCTTGGAATCTTTGCGCTGACAGATTATTTTGAAATTTCAGTCTCAAATCACCTTCTGATCTCCACCGTCGTCATGTTCTGATTCCCTCCAACGCGCTTCTTTTGATTTGAAGTTCGTTCGCCGATCCTTTTCTGATGTGAAGCGCTCGAGCATATCTGTACCAGCAGTCTTCTCGCGATTGATGAGTTTTTGAATTTTTGGGCAATCCACACTCTCCAACGTCGGCTGGCTCTTCCGATCCCAAATTTTCGTAGAAATATGGGTACTTGAAGTGTCATCGCTTTCTTCGATTGTTTCAAATACTGATTTTAGATCGTTACCTTGACTGGAAAACACAACTCTCGACAATAAAAAAAAACACACGCACACACCTTGGCCGCAAAGACAAGGATTTGCTGACCTTTTTTCTTCGACTTTGAACGAATTTCCTGAAACAATTCAACTTTTGAACCGTGAAAACTCAAGCGAAACTCATATACCTGCTGTGTCGCTACGTTGCCGTGCTAGTGATCCATCGAAAAAAAGGAGGGAAAATTTTTGAATGAGTTGGATAGTGAGAGCAGACTTTCCGAGTTCTTGAGCTTCAAGATTTCTTCTTTCGTTTCCTGATCGATTTTCGAGTTCTTACTGCTTCCGATGTTTTTTTTTAGCCTGCAAAAAACCGATTTTCAGCTGATTTCCCACCAGAAGAATTTCTCTACTTTCACAAAAGAGAACCTAGATTTGAAATTTGGCACCGAGTCAAGTTTGGAGGCGTCGCGTGTCTGCGTAGCGGTCGCCAGCTGAATCTCTTGCGGCTTTTCCATATTCTCACAGCTCTTTATCTGCAAAAGTATATTTATCATGGCTTTTCATTCGAATC</canonical>
            <polymorphic>TCCCATTGTCACAAGTGTTTTTTCTGGCTCCCCCGAGTTCGCGCTCAGAATTCAAAAACCCACTGGTTTTTAGTTACCATCTGTAATAGAAAGTACAGCCTTTTGGAACGTTGGGGATCACTGCTTACCATAGCGCATCTTGGAATCTTTGCGCTGACAGATTATTTTGAAATTTCAGTCTCAAATCACCTTCTGATCTCCACCGTCGTCATGTTCTGATTCCCTCCAACGCGCTTCTTTTGATTTGAAGTTCGTTCGCCGATCCTTTTCTGATGTGAAGCGCTCGAGCATATCTGTACCAGCAGTCTTCTCGCGATTGATGAGTTTTTGAATTTTTGGGCAATCCACACTCTCCAACGTCGGCTGGCTCTTCCGATCCCAAATTTTCGTAGAAATATGGGTACTTGAAGTGTCATCGCTTTCTTCGATTGTTTCAAATACTGATTTTAGATCGTTACCTTGACTGGAAAACACAACTCTCGACAATAAAAAAAAACACRCGCACACACCTTGGCCGCAAAGACAAGGATTTGCTGACCTTTTTTCTTCGACTTTGAACGAATTTCCTGAAACAATTCAACTTTTGAACCGTGAAAACTCAAGCGAAACTCATATACCTGCTGTGTCGCTACGTTGCCGTGCTAGTGATCCATCGAAAAAAAGGAGGGAAAATTTTTGAATGAGTTGGATAGTGAGAGCAGACTTTCCGAGTTCTTGAGCTTCAAGATTTCTTCTTTCGTTTCCTGATCGATTTTCGAGTTCTTACTGCTTCCGATGTTTTTTTTTAGCCTGCAAAAAACCGATTTTCAGCTGATTTCCCACCAGAAGAATTTCTCTACTTTCACAAAAGAGAACCTAGATTTGAAATTTGGCACCGAGTCAAGTTTGGAGGCGTCGCGTGTCTGCGTAGCGGTCGCCAGCTGAATCTCTTGCGGCTTTTCCATATTCTCACAGCTCTTTATCTGCAAAAGTATATTTATCATGGCTTTTCATTCGAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>127 85 75 70 68 63 61 58 50 49 47 45 32 30 27 25 23 16 14 11 6 6 4 2 2 2 2</canonical_bands>
                <polymorphic_bands>127 85 75 70 68 63 61 58 50 49 47 45 32 30 27 25 23 16 14 11 6 6 6 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTAGATCGTTACCTTGACTG</pcr_primer_p1>
		<pcr_primer_p2>CACTATCCAACTCATTCAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTTTAGATCGTTACCTTGACTGGAAAACACAACTCTCGACAATAAAAAAAAACACACGCACACACCTTGGCCGCAAAGACAAGGATTTGCTGACCTTTTTTCTTCGACTTTGAACGAATTTCCTGAAACAATTCAACTTTTGAACCGTGAAAACTCAAGCGAAACTCATATACCTGCTGTGTCGCTACGTTGCCGTGCTAGTGATCCATCGAAAAAAAGGAGGGAAAATTTTTGAATGAGTTGGATAGTG</canonical_amplicon>
		<polymorphic_amplicon>ATTTTAGATCGTTACCTTGACTGGAAAACACAACTCTCGACAATAAAAAAAAACACRCGCACACACCTTGGCCGCAAAGACAAGGATTTGCTGACCTTTTTTCTTCGACTTTGAACGAATTTCCTGAAACAATTCAACTTTTGAACCGTGAAAACTCAAGCGAAACTCATATACCTGCTGTGTCGCTACGTTGCCGTGCTAGTGATCCATCGAAAAAAAGGAGGGAAAATTTTTGAATGAGTTGGATAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33559</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>96489</contig_pos>
        <strand>+</strand>
        <context>GACTTTCCGA[G/T]TTCTTGAGCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGGAGGGAAAATTTTTGAATGAGTTGGATAGTGAGAGCAGACTTTCCGA</left_flank>
        <right_flank>TTCTTGAGCTTCAAGATTTCTTCTTTCGTTTCCTGATCGATTTTCGAGTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTCTGATTCCCTCCAACGCGCTTCTTTTGATTTGAAGTTCGTTCGCCGATCCTTTTCTGATGTGAAGCGCTCGAGCATATCTGTACCAGCAGTCTTCTCGCGATTGATGAGTTTTTGAATTTTTGGGCAATCCACACTCTCCAACGTCGGCTGGCTCTTCCGATCCCAAATTTTCGTAGAAATATGGGTACTTGAAGTGTCATCGCTTTCTTCGATTGTTTCAAATACTGATTTTAGATCGTTACCTTGACTGGAAAACACAACTCTCGACAATAAAAAAAAACACACGCACACACCTTGGCCGCAAAGACAAGGATTTGCTGACCTTTTTTCTTCGACTTTGAACGAATTTCCTGAAACAATTCAACTTTTGAACCGTGAAAACTCAAGCGAAACTCATATACCTGCTGTGTCGCTACGTTGCCGTGCTAGTGATCCATCGAAAAAAAGGAGGGAAAATTTTTGAATGAGTTGGATAGTGAGAGCAGACTTTCCGAGTTCTTGAGCTTCAAGATTTCTTCTTTCGTTTCCTGATCGATTTTCGAGTTCTTACTGCTTCCGATGTTTTTTTTTAGCCTGCAAAAAACCGATTTTCAGCTGATTTCCCACCAGAAGAATTTCTCTACTTTCACAAAAGAGAACCTAGATTTGAAATTTGGCACCGAGTCAAGTTTGGAGGCGTCGCGTGTCTGCGTAGCGGTCGCCAGCTGAATCTCTTGCGGCTTTTCCATATTCTCACAGCTCTTTATCTGCAAAAGTATATTTATCATGGCTTTTCATTCGAATCCCGACGATTTGTCGTCAAATTTAGCTCTAAAACCGCGGAAATCTCACATTGCGCGTAGAATAGGAGACACGATTCTGCAAACACCGCCGCGCAAAAGTGCACACTTCGCGACAGTCGAACTTTCGAGAATCATTTTTGGCCTATTTTTGTTCATTTTTTGTCGATTTTCTTGGTTTTTTTTCAGCGAAAAATTGAAAATATGTTGAAAAGT</canonical>
            <polymorphic>TGTTCTGATTCCCTCCAACGCGCTTCTTTTGATTTGAAGTTCGTTCGCCGATCCTTTTCTGATGTGAAGCGCTCGAGCATATCTGTACCAGCAGTCTTCTCGCGATTGATGAGTTTTTGAATTTTTGGGCAATCCACACTCTCCAACGTCGGCTGGCTCTTCCGATCCCAAATTTTCGTAGAAATATGGGTACTTGAAGTGTCATCGCTTTCTTCGATTGTTTCAAATACTGATTTTAGATCGTTACCTTGACTGGAAAACACAACTCTCGACAATAAAAAAAAACACACGCACACACCTTGGCCGCAAAGACAAGGATTTGCTGACCTTTTTTCTTCGACTTTGAACGAATTTCCTGAAACAATTCAACTTTTGAACCGTGAAAACTCAAGCGAAACTCATATACCTGCTGTGTCGCTACGTTGCCGTGCTAGTGATCCATCGAAAAAAAGGAGGGAAAATTTTTGAATGAGTTGGATAGTGAGAGCAGACTTTCCGAKTTCTTGAGCTTCAAGATTTCTTCTTTCGTTTCCTGATCGATTTTCGAGTTCTTACTGCTTCCGATGTTTTTTTTTAGCCTGCAAAAAACCGATTTTCAGCTGATTTCCCACCAGAAGAATTTCTCTACTTTCACAAAAGAGAACCTAGATTTGAAATTTGGCACCGAGTCAAGTTTGGAGGCGTCGCGTGTCTGCGTAGCGGTCGCCAGCTGAATCTCTTGCGGCTTTTCCATATTCTCACAGCTCTTTATCTGCAAAAGTATATTTATCATGGCTTTTCATTCGAATCCCGACGATTTGTCGTCAAATTTAGCTCTAAAACCGCGGAAATCTCACATTGCGCGTAGAATAGGAGACACGATTCTGCAAACACCGCCGCGCAAAAGTGCACACTTCGCGACAGTCGAACTTTCGAGAATCATTTTTGGCCTATTTTTGTTCATTTTTTGTCGATTTTCTTGGTTTTTTTTCAGCGAAAAATTGAAAATATGTTGAAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTCAAGCGAAACTCATATAC</pcr_primer_p1>
		<pcr_primer_p2>AAATTCTTCTGGTGGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AAACTCAAGCGAAACTCATATACCTGCTGTGTCGCTACGTTGCCGTGCTAGTGATCCATCGAAAAAAAGGAGGGAAAATTTTTGAATGAGTTGGATAGTGAGAGCAGACTTTCCGAGTTCTTGAGCTTCAAGATTTCTTCTTTCGTTTCCTGATCGATTTTCGAGTTCTTACTGCTTCCGATGTTTTTTTTTAGCCTGCAAAAAACCGATTTTCAGCTGATTTCCCACCAGAAGAATTT</canonical_amplicon>
		<polymorphic_amplicon>AAACTCAAGCGAAACTCATATACCTGCTGTGTCGCTACGTTGCCGTGCTAGTGATCCATCGAAAAAAAGGAGGGAAAATTTTTGAATGAGTTGGATAGTGAGAGCAGACTTTCCGAKTTCTTGAGCTTCAAGATTTCTTCTTTCGTTTCCTGATCGATTTTCGAGTTCTTACTGCTTCCGATGTTTTTTTTTAGCCTGCAAAAAACCGATTTTCAGCTGATTTCCCACCAGAAGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33560</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>96653</contig_pos>
        <strand></strand>
        <context>aaatttggca[C/G]cgagtcaagt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAAGAATTTCTCTACTTTCACAAAAGAGAACCTAGATTTGAAATTTGGCA</left_flank>
        <right_flank>CGAGTCAAGTTTGGAGGCGTCGCGTGTCTGCGTAGCGGTCGCCAGCTGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCCAAATTTTCGTAGAAATATGGGTACTTGAAGTGTCATCGCTTTCTTCGATTGTTTCAAATACTGATTTTAGATCGTTACCTTGACTGGAAAACACAACTCTCGACAATAAAAAAAAACACACGCACACACCTTGGCCGCAAAGACAAGGATTTGCTGACCTTTTTTCTTCGACTTTGAACGAATTTCCTGAAACAATTCAACTTTTGAACCGTGAAAACTCAAGCGAAACTCATATACCTGCTGTGTCGCTACGTTGCCGTGCTAGTGATCCATCGAAAAAAAGGAGGGAAAATTTTTGAATGAGTTGGATAGTGAGAGCAGACTTTCCGAGTTCTTGAGCTTCAAGATTTCTTCTTTCGTTTCCTGATCGATTTTCGAGTTCTTACTGCTTCCGATGTTTTTTTTTAGCCTGCAAAAAACCGATTTTCAGCTGATTTCCCACCAGAAGAATTTCTCTACTTTCACAAAAGAGAACCTAGATTTGAAATTTGGCACCGAGTCAAGTTTGGAGGCGTCGCGTGTCTGCGTAGCGGTCGCCAGCTGAATCTCTTGCGGCTTTTCCATATTCTCACAGCTCTTTATCTGCAAAAGTATATTTATCATGGCTTTTCATTCGAATCCCGACGATTTGTCGTCAAATTTAGCTCTAAAACCGCGGAAATCTCACATTGCGCGTAGAATAGGAGACACGATTCTGCAAACACCGCCGCGCAAAAGTGCACACTTCGCGACAGTCGAACTTTCGAGAATCATTTTTGGCCTATTTTTGTTCATTTTTTGTCGATTTTCTTGGTTTTTTTTCAGCGAAAAATTGAAAATATGTTGAAAAGTGTTCTTAGAAGATGAGATGTAGTAGCGGCAGTCGAAAAGTCTGCTCTCACTATCCAACTCATTCAAAACTTTCCCCGCGATTTTTCCGATCTGAAGCAAGCACCGCTAAGCAGCGACACATCGGGTATATGAGTTTCGCTTCAGTTTTCACGCTTGAAAAATCG</canonical>
            <polymorphic>ATCCCAAATTTTCGTAGAAATATGGGTACTTGAAGTGTCATCGCTTTCTTCGATTGTTTCAAATACTGATTTTAGATCGTTACCTTGACTGGAAAACACAACTCTCGACAATAAAAAAAAACACACGCACACACCTTGGCCGCAAAGACAAGGATTTGCTGACCTTTTTTCTTCGACTTTGAACGAATTTCCTGAAACAATTCAACTTTTGAACCGTGAAAACTCAAGCGAAACTCATATACCTGCTGTGTCGCTACGTTGCCGTGCTAGTGATCCATCGAAAAAAAGGAGGGAAAATTTTTGAATGAGTTGGATAGTGAGAGCAGACTTTCCGAGTTCTTGAGCTTCAAGATTTCTTCTTTCGTTTCCTGATCGATTTTCGAGTTCTTACTGCTTCCGATGTTTTTTTTTAGCCTGCAAAAAACCGATTTTCAGCTGATTTCCCACCAGAAGAATTTCTCTACTTTCACAAAAGAGAACCTAGATTTGAAATTTGGCASCGAGTCAAGTTTGGAGGCGTCGCGTGTCTGCGTAGCGGTCGCCAGCTGAATCTCTTGCGGCTTTTCCATATTCTCACAGCTCTTTATCTGCAAAAGTATATTTATCATGGCTTTTCATTCGAATCCCGACGATTTGTCGTCAAATTTAGCTCTAAAACCGCGGAAATCTCACATTGCGCGTAGAATAGGAGACACGATTCTGCAAACACCGCCGCGCAAAAGTGCACACTTCGCGACAGTCGAACTTTCGAGAATCATTTTTGGCCTATTTTTGTTCATTTTTTGTCGATTTTCTTGGTTTTTTTTCAGCGAAAAATTGAAAATATGTTGAAAAGTGTTCTTAGAAGATGAGATGTAGTAGCGGCAGTCGAAAAGTCTGCTCTCACTATCCAACTCATTCAAAACTTTCCCCGCGATTTTTCCGATCTGAAGCAAGCACCGCTAAGCAGCGACACATCGGGTATATGAGTTTCGCTTCAGTTTTCACGCTTGAAAAATCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>127 109 95 85 61 53 50 48 47 37 32 32 30 27 25 23 23 16 16 16 14 14 6 4 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>127 109 95 85 61 57 53 50 48 47 37 32 32 25 23 23 16 16 16 14 14 6 4 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAGCTTCAAGATTTCTTCTT</pcr_primer_p1>
		<pcr_primer_p2>GATAAAGAGCTGTGAGAATATGG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGAGCTTCAAGATTTCTTCTTTCGTTTCCTGATCGATTTTCGAGTTCTTACTGCTTCCGATGTTTTTTTTTAGCCTGCAAAAAACCGATTTTCAGCTGATTTCCCACCAGAAGAATTTCTCTACTTTCACAAAAGAGAACCTAGATTTGAAATTTGGCACCGAGTCAAGTTTGGAGGCGTCGCGTGTCTGCGTAGCGGTCGCCAGCTGAATCTCTTGCGGCTTTTCCATATTCTCACAGCTCTTTATC</canonical_amplicon>
		<polymorphic_amplicon>TTGAGCTTCAAGATTTCTTCTTTCGTTTCCTGATCGATTTTCGAGTTCTTACTGCTTCCGATGTTTTTTTTTAGCCTGCAAAAAACCGATTTTCAGCTGATTTCCCACCAGAAGAATTTCTCTACTTTCACAAAAGAGAACCTAGATTTGAAATTTGGCASCGAGTCAAGTTTGGAGGCGTCGCGTGTCTGCGTAGCGGTCGCCAGCTGAATCTCTTGCGGCTTTTCCATATTCTCACAGCTCTTTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33561</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>110247</contig_pos>
        <strand></strand>
        <context>actcattttg[A/C]agmtcttgac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTG</left_flank>
        <right_flank>AGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACGTGGATATGGGATTTCGAAGCTTCTCGAATGAAAATACTAGCAGAATGGAAGTCCTTAGCACCTGCGTAGTCGATTTCATAACCTCCAGTTGGTTTGAAAACTATAAATTGGGGTAATTTGGTCTTATCAACCAAATCATCACAGATTTCTGATTTTGAGCAATCAAATGAGAAAATTTGGTTGTCAATTAGAGCGGGAAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTA</canonical>
            <polymorphic>AGACGTGGATATGGGATTTCGAAGCTTCTCGAATGAAAATACTAGCAGAATGGAAGTCCTTAGCACCTGCGTAGTCGATTTCATAACCTCCAGTTGGTTTGAAAACTATAAATTGGGGTAATTTGGTCTTATCAACCAAATCATCACAGATTTCTGATTTTGAGCAATCAAATGAGAAAATTTGGTTGTCAATTAGAGCGGGAAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGMAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTCGGAAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCATTGAGTATTTGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>862</pcr_amplicon_size>
		<canonical_amplicon>AAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCA</canonical_amplicon>
		<polymorphic_amplicon>AAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGMAGCTCTTGACATTAAAAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33562</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>110250</contig_pos>
        <strand></strand>
        <context>cattttgmag[C/A]tcttgacatt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAG</left_flank>
        <right_flank>TCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTGGATATGGGATTTCGAAGCTTCTCGAATGAAAATACTAGCAGAATGGAAGTCCTTAGCACCTGCGTAGTCGATTTCATAACCTCCAGTTGGTTTGAAAACTATAAATTGGGGTAATTTGGTCTTATCAACCAAATCATCACAGATTTCTGATTTTGAGCAATCAAATGAGAAAATTTGGTTGTCAATTAGAGCGGGAAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCC</canonical>
            <polymorphic>CGTGGATATGGGATTTCGAAGCTTCTCGAATGAAAATACTAGCAGAATGGAAGTCCTTAGCACCTGCGTAGTCGATTTCATAACCTCCAGTTGGTTTGAAAACTATAAATTGGGGTAATTTGGTCTTATCAACCAAATCATCACAGATTTCTGATTTTGAGCAATCAAATGAGAAAATTTGGTTGTCAATTAGAGCGGGAAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGMTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>298 161 136 123 91 57 44 37 32 21</canonical_bands>
                <polymorphic_bands>298 161 160 136 91 57 44 32 21</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>222 139 136 101 91 76 49 44 37 32 22 22 21 8</canonical_bands>
                <polymorphic_bands>222 139 136 101 91 76 59 49 44 32 22 21 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTCGGAAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCATTGAGTATTTGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>862</pcr_amplicon_size>
		<canonical_amplicon>AAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGMTCTTGACATTAAAAATTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33563</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>110335</contig_pos>
        <strand></strand>
        <context>aatatttctt[T/A]aaaaaattat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTT</left_flank>
        <right_flank>AAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAGTTGGTTTGAAAACTATAAATTGGGGTAATTTGGTCTTATCAACCAAATCATCACAGATTTCTGATTTTGAGCAATCAAATGAGAAAATTTGGTTGTCAATTAGAGCGGGAAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCA</canonical>
            <polymorphic>TCCAGTTGGTTTGAAAACTATAAATTGGGGTAATTTGGTCTTATCAACCAAATCATCACAGATTTCTGATTTTGAGCAATCAAATGAGAAAATTTGGTTGTCAATTAGAGCGGGAAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTWAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>282 218 213 196 91</canonical_bands>
                <polymorphic_bands>373 218 213 196</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>217 114 103 94 93 91 87 67 52 37 23 22</canonical_bands>
                <polymorphic_bands>217 143 114 103 94 93 87 67 37 23 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTCGGAAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCATTGAGTATTTGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>862</pcr_amplicon_size>
		<canonical_amplicon>AAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</canonical_amplicon>
		<polymorphic_amplicon>AAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTWAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33564</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>110365</contig_pos>
        <strand></strand>
        <context>gtcctaactt[T/C]ctgaattttc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTT</left_flank>
        <right_flank>CTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATTTGGTCTTATCAACCAAATCATCACAGATTTCTGATTTTGAGCAATCAAATGAGAAAATTTGGTTGTCAATTAGAGCGGGAAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCT</canonical>
            <polymorphic>TAATTTGGTCTTATCAACCAAATCATCACAGATTTCTGATTTTGAGCAATCAAATGAGAAAATTTGGTTGTCAATTAGAGCGGGAAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTYCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>273 272 174 79 57 56 52 37</canonical_bands>
                <polymorphic_bands>325 272 174 79 57 56 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTCGGAAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCATTGAGTATTTGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>862</pcr_amplicon_size>
		<canonical_amplicon>AAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</canonical_amplicon>
		<polymorphic_amplicon>AAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTYCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33565</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>110393</contig_pos>
        <strand></strand>
        <context>cgttttgaaa[A/T]attgattttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAA</left_flank>
        <right_flank>ATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGATTTCTGATTTTGAGCAATCAAATGAGAAAATTTGGTTGTCAATTAGAGCGGGAAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGAC</canonical>
            <polymorphic>CAGATTTCTGATTTTGAGCAATCAAATGAGAAAATTTGGTTGTCAATTAGAGCGGGAAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAWATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>126 104 102 96 92 69 67 45 36 36 35 32 31 29 26 24 15 12 9 8 6</canonical_bands>
                <polymorphic_bands>126 104 102 96 92 69 67 59 45 36 36 32 31 29 26 15 12 9 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTCGGAAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCATTGAGTATTTGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>862</pcr_amplicon_size>
		<canonical_amplicon>AAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</canonical_amplicon>
		<polymorphic_amplicon>AAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAWATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33566</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>110404</contig_pos>
        <strand></strand>
        <context>attgattttt[G/A]aayttgcctt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTT</left_flank>
        <right_flank>AACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGAGCAATCAAATGAGAAAATTTGGTTGTCAATTAGAGCGGGAAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAAT</canonical>
            <polymorphic>TTTTGAGCAATCAAATGAGAAAATTTGGTTGTCAATTAGAGCGGGAAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTRAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTCGGAAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCATTGAGTATTTGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>862</pcr_amplicon_size>
		<canonical_amplicon>AAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</canonical_amplicon>
		<polymorphic_amplicon>AAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTRAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33567</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>110407</contig_pos>
        <strand></strand>
        <context>gatttttraa[C/T]ttgccttgtt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAA</left_flank>
        <right_flank>TTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGCAATCAAATGAGAAAATTTGGTTGTCAATTAGAGCGGGAAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGAT</canonical>
            <polymorphic>TGAGCAATCAAATGAGAAAATTTGGTTGTCAATTAGAGCGGGAAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAAYTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTCGGAAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCATTGAGTATTTGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>862</pcr_amplicon_size>
		<canonical_amplicon>AAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</canonical_amplicon>
		<polymorphic_amplicon>AAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAAYTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33568</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>110437</contig_pos>
        <strand></strand>
        <context>aaattgagta[G/T]actcatgacc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTA</left_flank>
        <right_flank>ACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTAGAGCGGGAAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGT</canonical>
            <polymorphic>AATTAGAGCGGGAAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAKACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 296 202</canonical_bands>
                <polymorphic_bands>798 202</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>500 377 123</canonical_bands>
                <polymorphic_bands>623 377</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTCGGAAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCATTGAGTATTTGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>862</pcr_amplicon_size>
		<canonical_amplicon>AAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</canonical_amplicon>
		<polymorphic_amplicon>AAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAKACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33569</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>110448</contig_pos>
        <strand>+</strand>
        <context>actcatgacc[C/T]acttwgctyt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACC</left_flank>
        <right_flank>ACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATT</canonical>
            <polymorphic>GAAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCYACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>205 148 125 123 105 68 58 49 48 41 10 10 7 3</canonical_bands>
                <polymorphic_bands>205 148 125 123 117 105 58 48 41 10 10 7 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTCGGAAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCATTGAGTATTTGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>862</pcr_amplicon_size>
		<canonical_amplicon>AAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</canonical_amplicon>
		<polymorphic_amplicon>AAGTCGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCYACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33570</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>110453</contig_pos>
        <strand>+</strand>
        <context>tgaccyactt[A/T]gctytatttw</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTT</left_flank>
        <right_flank>GCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGC</canonical>
            <polymorphic>CGTCGGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTWGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>161 136 135 123 116 91 82 57 37 32 30</canonical_bands>
                <polymorphic_bands>161 136 135 123 123 116 82 57 37 30</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>139 136 101 91 76 68 67 59 49 40 37 32 30 23 22 22 8</canonical_bands>
                <polymorphic_bands>139 136 123 101 76 68 67 59 49 40 37 30 23 22 22 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTCGGAAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCATTGAGTATTTGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>862</pcr_amplicon_size>
		<canonical_amplicon>TAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</canonical_amplicon>
		<polymorphic_amplicon>TWGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33571</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>110457</contig_pos>
        <strand>+</strand>
        <context>cyacttwgct[C/T]tatttwartk</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCT</left_flank>
        <right_flank>TATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACG</canonical>
            <polymorphic>GGAAATCTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTYTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTCGGAAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCATTGAGTATTTGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>862</pcr_amplicon_size>
		<canonical_amplicon>TTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</canonical_amplicon>
		<polymorphic_amplicon>TYTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33572</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>110463</contig_pos>
        <strand>+</strand>
        <context>wgctytattt[A/T]artkkttsmc</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTT</left_flank>
        <right_flank>AATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCA</canonical>
            <polymorphic>CTTTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTWAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>231 114 94 93 91 89 87 67 52 37 23 22</canonical_bands>
                <polymorphic_bands>231 124 114 94 93 91 89 67 52 23 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTCGGAAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCATTGAGTATTTGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>862</pcr_amplicon_size>
		<canonical_amplicon>TTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</canonical_amplicon>
		<polymorphic_amplicon>TWAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33573</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>110465</contig_pos>
        <strand>+</strand>
        <context>ctytatttwa[A/G]tkkttsmctr</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTA</left_flank>
        <right_flank>TTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAG</canonical>
            <polymorphic>TTTTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTARTTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>233 114 94 93 91 87 87 67 52 37 23 22</canonical_bands>
                <polymorphic_bands>233 124 114 94 93 91 87 67 52 23 22</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>126 102 96 92 76 69 67 45 42 36 36 35 35 31 29 24 21 15 9 8 6</canonical_bands>
                <polymorphic_bands>138 126 96 92 76 69 67 45 42 36 35 35 31 29 24 21 15 9 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTCGGAAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCATTGAGTATTTGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>862</pcr_amplicon_size>
		<canonical_amplicon>AATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</canonical_amplicon>
		<polymorphic_amplicon>ARTTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33574</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>110467</contig_pos>
        <strand>+</strand>
        <context>ytatttwart[G/T]kttsmctrgg</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAAT</left_flank>
        <right_flank>TTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTC</canonical>
            <polymorphic>TTTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATKTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>126 102 96 92 74 69 67 45 42 36 36 35 35 31 29 24 23 15 9 8 6</canonical_bands>
                <polymorphic_bands>138 126 96 92 74 69 67 45 42 36 35 35 31 29 24 23 15 9 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTCGGAAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCATTGAGTATTTGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>862</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</canonical_amplicon>
		<polymorphic_amplicon>TKTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33575</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>110468</contig_pos>
        <strand>+</strand>
        <context>tatttwartk[G/T]ttsmctrgga</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATT</left_flank>
        <right_flank>TTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTCC</canonical>
            <polymorphic>TTCTGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTKTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTCGGAAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCATTGAGTATTTGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>862</pcr_amplicon_size>
		<canonical_amplicon>TTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</canonical_amplicon>
		<polymorphic_amplicon>TKTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33576</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>110471</contig_pos>
        <strand>+</strand>
        <context>ttwartkktt[C/G]mctrggatta</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTT</left_flank>
        <right_flank>ACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTCCATC</canonical>
            <polymorphic>TGCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTSACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTCCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTCGGAAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCATTGAGTATTTGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>862</pcr_amplicon_size>
		<canonical_amplicon>TGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</canonical_amplicon>
		<polymorphic_amplicon>TGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33577</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>110472</contig_pos>
        <strand>+</strand>
        <context>twartkktts[A/C]ctrggattac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTG</left_flank>
        <right_flank>CTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTCCATCC</canonical>
            <polymorphic>GCGTCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGMCTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTCCATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTCGGAAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCATTGAGTATTTGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>862</pcr_amplicon_size>
		<canonical_amplicon>GACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</canonical_amplicon>
		<polymorphic_amplicon>GACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33578</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>110475</contig_pos>
        <strand>+</strand>
        <context>rtkkttsmct[A/G]ggattactgt</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACT</left_flank>
        <right_flank>GGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTCCATCCAGC</canonical>
            <polymorphic>TCGCCTGAACCTCATTGGCCAACATCCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTRGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTCCATCCAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTCGGAAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCATTGAGTATTTGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>862</pcr_amplicon_size>
		<canonical_amplicon>TGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</canonical_amplicon>
		<polymorphic_amplicon>TGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33579</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>110500</contig_pos>
        <strand></strand>
        <context>ttcgcggtga[T/G]accmaacttg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGA</left_flank>
        <right_flank>ACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTCCATCCAGCATTGAGGAGAGTTTTCGTCTGAAAA</canonical>
            <polymorphic>CCAAACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGAKACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTCCATCCAGCATTGAGGAGAGTTTTCGTCTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTCGGAAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCATTGAGTATTTGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>862</pcr_amplicon_size>
		<canonical_amplicon>ATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</canonical_amplicon>
		<polymorphic_amplicon>AKACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33580</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>110504</contig_pos>
        <strand>+</strand>
        <context>cggtgakacc[A/C]aacttgwarc</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACC</left_flank>
        <right_flank>AACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTCCATCCAGCATTGAGGAGAGTTTTCGTCTGAAAATCAT</canonical>
            <polymorphic>ACTGCAATCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCMAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTCCATCCAGCATTGAGGAGAGTTTTCGTCTGAAAATCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTCGGAAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCATTGAGTATTTGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>862</pcr_amplicon_size>
		<canonical_amplicon>CCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</canonical_amplicon>
		<polymorphic_amplicon>CMAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33581</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>110511</contig_pos>
        <strand>+</strand>
        <context>accmaacttg[A/T]arcaaacmwa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTG</left_flank>
        <right_flank>AGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTCCATCCAGCATTGAGGAGAGTTTTCGTCTGAAAATCATTAGGTTA</canonical>
            <polymorphic>TCGCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGWAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTCCATCCAGCATTGAGGAGAGTTTTCGTCTGAAAATCATTAGGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTCGGAAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCATTGAGTATTTGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>862</pcr_amplicon_size>
		<canonical_amplicon>GAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</canonical_amplicon>
		<polymorphic_amplicon>GWAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33582</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>110513</contig_pos>
        <strand>+</strand>
        <context>cmaacttgwa[A/G]caaacmwagg</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAA</left_flank>
        <right_flank>CAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTCCATCCAGCATTGAGGAGAGTTTTCGTCTGAAAATCATTAGGTTATC</canonical>
            <polymorphic>GCCTCATCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAARCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTCCATCCAGCATTGAGGAGAGTTTTCGTCTGAAAATCATTAGGTTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTCGGAAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCATTGAGTATTTGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>862</pcr_amplicon_size>
		<canonical_amplicon>AGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</canonical_amplicon>
		<polymorphic_amplicon>ARCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33583</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>110519</contig_pos>
        <strand>+</strand>
        <context>tgwarcaaac[A/C]waggcwtgtt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAAC</left_flank>
        <right_flank>TAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTCCATCCAGCATTGAGGAGAGTTTTCGTCTGAAAATCATTAGGTTATCAAAAAA</canonical>
            <polymorphic>TCCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACMTAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTCCATCCAGCATTGAGGAGAGTTTTCGTCTGAAAATCATTAGGTTATCAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>503 378 119</canonical_bands>
                <polymorphic_bands>881 119</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTCGGAAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCATTGAGTATTTGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>862</pcr_amplicon_size>
		<canonical_amplicon>CATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</canonical_amplicon>
		<polymorphic_amplicon>CMTAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33584</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>110520</contig_pos>
        <strand>+</strand>
        <context>gwarcaaacm[A/T]aggcwtgttt</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACA</left_flank>
        <right_flank>AGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTCCATCCAGCATTGAGGAGAGTTTTCGTCTGAAAATCATTAGGTTATCAAAAAAT</canonical>
            <polymorphic>CCGGATCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACAWAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTCCATCCAGCATTGAGGAGAGTTTTCGTCTGAAAATCATTAGGTTATCAAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>502 378 120</canonical_bands>
                <polymorphic_bands>880 120</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTCGGAAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCATTGAGTATTTGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>862</pcr_amplicon_size>
		<canonical_amplicon>ATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</canonical_amplicon>
		<polymorphic_amplicon>AWAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33585</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>110525</contig_pos>
        <strand>+</strand>
        <context>aaacmwaggc[A/T]tgtttrtact</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGC</left_flank>
        <right_flank>TGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTCCATCCAGCATTGAGGAGAGTTTTCGTCTGAAAATCATTAGGTTATCAAAAAATAAATA</canonical>
            <polymorphic>TCGTTCCCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCWTGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTCCATCCAGCATTGAGGAGAGTTTTCGTCTGAAAATCATTAGGTTATCAAAAAATAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>502 213 180 105</canonical_bands>
                <polymorphic_bands>607 213 180</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>296 152 137 120 105 83 79 28</canonical_bands>
                <polymorphic_bands>296 188 152 137 120 79 28</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>497 378 125</canonical_bands>
                <polymorphic_bands>875 125</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTCGGAAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCATTGAGTATTTGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>862</pcr_amplicon_size>
		<canonical_amplicon>CATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</canonical_amplicon>
		<polymorphic_amplicon>CWTGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33586</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>110531</contig_pos>
        <strand>+</strand>
        <context>aggcwtgttt[A/G]tactcatttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTT</left_flank>
        <right_flank>TACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTCCATCCAGCATTGAGGAGAGTTTTCGTCTGAAAATCATTAGGTTATCAAAAAATAAATAACATAT</canonical>
            <polymorphic>CCCTCTGAAAAATTTGAATTTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTRTACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTCCATCCAGCATTGAGGAGAGTTTTCGTCTGAAAATCATTAGGTTATCAAAAAATAAATAACATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTCGGAAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCATTGAGTATTTGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>862</pcr_amplicon_size>
		<canonical_amplicon>TATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</canonical_amplicon>
		<polymorphic_amplicon>TRTACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33587</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>110550</contig_pos>
        <strand>+</strand>
        <context>ttgaagctct[A/T]aacgcgtaag</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCT</left_flank>
        <right_flank>AACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTCCATCCAGCATTGAGGAGAGTTTTCGTCTGAAAATCATTAGGTTATCAAAAAATAAATAACATATTCTTTATCAGCTCAGTTAA</canonical>
            <polymorphic>TTTAAAATTGAGTTTTTAGCTGTTAGGCTTTGTTTGAACTCTCTGACCAAAATTTTCAAAATCAGCGCGTTTAGAGCTTCAAAATGAGTATACTCATGACCCACTTTGCTCCATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTWAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTCCATCCAGCATTGAGGAGAGTTTTCGTCTGAAAATCATTAGGTTATCAAAAAATAAATAACATATTCTTTATCAGCTCAGTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>315 114 94 93 91 87 67 52 37 23 22 3 2</canonical_bands>
                <polymorphic_bands>315 114 109 94 93 91 67 52 37 23 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTCGGAAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCATTGAGTATTTGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>862</pcr_amplicon_size>
		<canonical_amplicon>TTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</canonical_amplicon>
		<polymorphic_amplicon>TWAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33588</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>110663</contig_pos>
        <strand></strand>
        <context>tcccgaattt[T/C]gaagcgtgaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTT</left_flank>
        <right_flank>GAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTCCATCCAGCATTGAGGAGAGTTTTCGTCTGAAAATCATTAGGTTATCAAAAAATAAATAACATATTCTTTATCAGCTCAGTTAAAGCTTCAAAATGAGTATAAACATGACTAGTCTTGTTTTAAGTGGATCTCGCCGCGAAAACTACAGTAATCCCACCGGAAATTCAAAATAGAGCAAAGTGGGTCATGAGTATAC</canonical>
            <polymorphic>TTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTYGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTCCATCCAGCATTGAGGAGAGTTTTCGTCTGAAAATCATTAGGTTATCAAAAAATAAATAACATATTCTTTATCAGCTCAGTTAAAGCTTCAAAATGAGTATAAACATGACTAGTCTTGTTTTAAGTGGATCTCGCCGCGAAAACTACAGTAATCCCACCGGAAATTCAAAATAGAGCAAAGTGGGTCATGAGTATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTCGGAAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCATTGAGTATTTGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>862</pcr_amplicon_size>
		<canonical_amplicon>TTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</canonical_amplicon>
		<polymorphic_amplicon>TYGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33589</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>110688</contig_pos>
        <strand></strand>
        <context>acctaggctt[T/G]tttatacttg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTT</left_flank>
        <right_flank>TTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTT</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTCCATCCAGCATTGAGGAGAGTTTTCGTCTGAAAATCATTAGGTTATCAAAAAATAAATAACATATTCTTTATCAGCTCAGTTAAAGCTTCAAAATGAGTATAAACATGACTAGTCTTGTTTTAAGTGGATCTCGCCGCGAAAACTACAGTAATCCCACCGGAAATTCAAAATAGAGCAAAGTGGGTCATGAGTATACTCATTTTGAAGCTCGCAACGCTACA</canonical>
            <polymorphic>TAGTTTTCGCGATAAGACCCAACTTGAATAACATCTAGGCTTGTTTATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTKTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTCCATCCAGCATTGAGGAGAGTTTTCGTCTGAAAATCATTAGGTTATCAAAAAATAAATAACATATTCTTTATCAGCTCAGTTAAAGCTTCAAAATGAGTATAAACATGACTAGTCTTGTTTTAAGTGGATCTCGCCGCGAAAACTACAGTAATCCCACCGGAAATTCAAAATAGAGCAAAGTGGGTCATGAGTATACTCATTTTGAAGCTCGCAACGCTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTCGGAAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCATTGAGTATTTGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>862</pcr_amplicon_size>
		<canonical_amplicon>TTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</canonical_amplicon>
		<polymorphic_amplicon>TKTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33590</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>110733</contig_pos>
        <strand></strand>
        <context>tccaaatttt[T/G]aactttcaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTT</left_flank>
        <right_flank>AACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCAT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTCCATCCAGCATTGAGGAGAGTTTTCGTCTGAAAATCATTAGGTTATCAAAAAATAAATAACATATTCTTTATCAGCTCAGTTAAAGCTTCAAAATGAGTATAAACATGACTAGTCTTGTTTTAAGTGGATCTCGCCGCGAAAACTACAGTAATCCCACCGGAAATTCAAAATAGAGCAAAGTGGGTCATGAGTATACTCATTTTGAAGCTCGCAACGCTACAAATTCAAATTTTAGGTTTTGCTGTAAAATTTGAATTGTTTGAAGA</canonical>
            <polymorphic>TATACTCATTTTGAAGCTCTTGACATTAAAAATTCAAAATGTGCGAGTTTAAGCTGTTTGGAGCAAAATTGAGAGAATTATGAGATTTTTCAATATTTCTTTAAAAAATTATGTTGAAAGCGTCCTAACTTTCTGAATTTTCATAGTGTCGTTTTGAAAAATTGATTTTTGAACTTGCCTTGTTCAGAGCTTTAAATTGAGTAGACTCATGACCCACTTAGCTTTATTTTAATTTTTGACTGGGATTACTGTAGTTTTCGCGGTGATACCCAACTTGAAGCAAACATAGGCATGTTTATACTCATTTTGAAGCTCTTAACGCGTAAGATTCAAATTTTTAAGTTTCAAAACGATTTTTCGGATTTTGGAAGAGATGTTTGATTTTTCGTGAAAAACATGCGCCTTTAAATCTATGATAATCCCGAATTTTGAAGCGTGAAGCAAACCTAGGCTTTTTTATACTTGTTTTGAAGCTCTTTTCATCCTAAATCCAAATTTTKAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACATGCTTTGTGATCTCCTGTGCATCCATACTTTCAATATTTATTTGGCTTTTTTTCTCTAATTTTCTTGCTGGGAACCACATGACACCACTAGAATGATCGAATTTCGAACAGAGCTCTTCTTCAGAGTGACAGTCAATTGTTGCCACGTTGGCAAGTCCATCCAGCATTGAGGAGAGTTTTCGTCTGAAAATCATTAGGTTATCAAAAAATAAATAACATATTCTTTATCAGCTCAGTTAAAGCTTCAAAATGAGTATAAACATGACTAGTCTTGTTTTAAGTGGATCTCGCCGCGAAAACTACAGTAATCCCACCGGAAATTCAAAATAGAGCAAAGTGGGTCATGAGTATACTCATTTTGAAGCTCGCAACGCTACAAATTCAAATTTTAGGTTTTGCTGTAAAATTTGAATTGTTTGAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>315 146 94 91 87 67 52 40 37 26 23 22</canonical_bands>
                <polymorphic_bands>409 146 91 87 67 52 40 37 26 23 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTCGGAAATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTCATTGAGTATTTGGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>862</pcr_amplicon_size>
		<canonical_amplicon>TTAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</canonical_amplicon>
		<polymorphic_amplicon>TKAACTTTCAAATTTACCCAGAAAACGCTGAAGGCTGTCTGCCTCAATCCATGGAAGCTCTTCCAAATACTCAATGACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33591</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>112276</contig_pos>
        <strand>+</strand>
        <context>ctagattttt[A/G]aatttgsswy</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTT</left_flank>
        <right_flank>AATTTGGGACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGCTCAAACACTCAATATTATCTCCTCCACACATGTCTACAATCCATGGAAGTCGATTGTAGGGTTCCCAATCTTCGCTCAAAGCCTTCCAATTCTCAGAATTCAAGTGTAAAACTTCAGATTTCAGCCGCTGAATCACAAAATCGACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATAAAAAACTAGGGACGGATAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCTTCGGCGCAGTTCACAGCACCCACTCGAATGGTTCCCTCGATTTCACGAGCGAATTTGCGCCACTGGAAAATTGAATTTTTGGAATTTTGATATTAGAAAAATTAGGAGCATTTTGAGCTAAAAATGATAAAAATTGGACCAGAATTGACAAAGTTATAGTTATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTCTAACTCAGAGTCTCGGTGTCATTGTAAACCAAAAACCAGCAACATCGACCAGGCATTGACAAAGTTATGGCTATTTTTGAAATGCCAAATTCTTTTTTTGGTAATTTGGCTCTAACTTCCTTACTCTTACTATAAACGAAATGAAACATAAATTGTCAAACTTGGCAGGTTCAGAGCTTCAAAATGAGTATAAACAC</canonical>
            <polymorphic>AGAGCTCAAACACTCAATATTATCTCCTCCACACATGTCTACAATCCATGGAAGTCGATTGTAGGGTTCCCAATCTTCGCTCAAAGCCTTCCAATTCTCAGAATTCAAGTGTAAAACTTCAGATTTCAGCCGCTGAATCACAAAATCGACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATAAAAAACTAGGGACGGATAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCTTCGGCGCAGTTCACAGCACCCACTCGAATGGTTCCCTCGATTTCACGAGCGAATTTGCGCCACTGGAAAATTGAATTTTTGGAATTTTGATATTAGAAAAATTAGGAGCATTTTGAGCTAAAAATGATAAAAATTGGACCAGAATTGACAAAGTTATAGTTATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTRAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTCTAACTCAGAGTCTCGGTGTCATTGTAAACCAAAAACCAGCAACATCGACCAGGCATTGACAAAGTTATGGCTATTTTTGAAATGCCAAATTCTTTTTTTGGTAATTTGGCTCTAACTTCCTTACTCTTACTATAAACGAAATGAAACATAAATTGTCAAACTTGGCAGGTTCAGAGCTTCAAAATGAGTATAAACAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>249 123 110 101 92 87 80 78 25 24 22 9</canonical_bands>
                <polymorphic_bands>327 123 110 101 92 87 80 25 24 22 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTTTTGGAATTTCGTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAATTTATCAAACGAAAAAGTCA</pcr_primer_p2>
		<pcr_amplicon_size>390</pcr_amplicon_size>
		<canonical_amplicon>TATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTC</canonical_amplicon>
		<polymorphic_amplicon>TATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTRAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33592</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>112283</contig_pos>
        <strand>+</strand>
        <context>tttraatttg[C/G]swygttsagr</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTG</left_flank>
        <right_flank>GACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACACTCAATATTATCTCCTCCACACATGTCTACAATCCATGGAAGTCGATTGTAGGGTTCCCAATCTTCGCTCAAAGCCTTCCAATTCTCAGAATTCAAGTGTAAAACTTCAGATTTCAGCCGCTGAATCACAAAATCGACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATAAAAAACTAGGGACGGATAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCTTCGGCGCAGTTCACAGCACCCACTCGAATGGTTCCCTCGATTTCACGAGCGAATTTGCGCCACTGGAAAATTGAATTTTTGGAATTTTGATATTAGAAAAATTAGGAGCATTTTGAGCTAAAAATGATAAAAATTGGACCAGAATTGACAAAGTTATAGTTATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTCTAACTCAGAGTCTCGGTGTCATTGTAAACCAAAAACCAGCAACATCGACCAGGCATTGACAAAGTTATGGCTATTTTTGAAATGCCAAATTCTTTTTTTGGTAATTTGGCTCTAACTTCCTTACTCTTACTATAAACGAAATGAAACATAAATTGTCAAACTTGGCAGGTTCAGAGCTTCAAAATGAGTATAAACACGACTAGG</canonical>
            <polymorphic>AAACACTCAATATTATCTCCTCCACACATGTCTACAATCCATGGAAGTCGATTGTAGGGTTCCCAATCTTCGCTCAAAGCCTTCCAATTCTCAGAATTCAAGTGTAAAACTTCAGATTTCAGCCGCTGAATCACAAAATCGACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATAAAAAACTAGGGACGGATAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCTTCGGCGCAGTTCACAGCACCCACTCGAATGGTTCCCTCGATTTCACGAGCGAATTTGCGCCACTGGAAAATTGAATTTTTGGAATTTTGATATTAGAAAAATTAGGAGCATTTTGAGCTAAAAATGATAAAAATTGGACCAGAATTGACAAAGTTATAGTTATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGSGACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTCTAACTCAGAGTCTCGGTGTCATTGTAAACCAAAAACCAGCAACATCGACCAGGCATTGACAAAGTTATGGCTATTTTTGAAATGCCAAATTCTTTTTTTGGTAATTTGGCTCTAACTTCCTTACTCTTACTATAAACGAAATGAAACATAAATTGTCAAACTTGGCAGGTTCAGAGCTTCAAAATGAGTATAAACACGACTAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTTGGAATTTCGTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAATTTATCAAACGAAAAAGTCA</pcr_primer_p2>
		<pcr_amplicon_size>390</pcr_amplicon_size>
		<canonical_amplicon>TATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTC</canonical_amplicon>
		<polymorphic_amplicon>TATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGSGACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33593</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>112284</contig_pos>
        <strand>+</strand>
        <context>ttraatttgs[C/G]wygttsagrg</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGG</left_flank>
        <right_flank>ACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACACTCAATATTATCTCCTCCACACATGTCTACAATCCATGGAAGTCGATTGTAGGGTTCCCAATCTTCGCTCAAAGCCTTCCAATTCTCAGAATTCAAGTGTAAAACTTCAGATTTCAGCCGCTGAATCACAAAATCGACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATAAAAAACTAGGGACGGATAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCTTCGGCGCAGTTCACAGCACCCACTCGAATGGTTCCCTCGATTTCACGAGCGAATTTGCGCCACTGGAAAATTGAATTTTTGGAATTTTGATATTAGAAAAATTAGGAGCATTTTGAGCTAAAAATGATAAAAATTGGACCAGAATTGACAAAGTTATAGTTATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTCTAACTCAGAGTCTCGGTGTCATTGTAAACCAAAAACCAGCAACATCGACCAGGCATTGACAAAGTTATGGCTATTTTTGAAATGCCAAATTCTTTTTTTGGTAATTTGGCTCTAACTTCCTTACTCTTACTATAAACGAAATGAAACATAAATTGTCAAACTTGGCAGGTTCAGAGCTTCAAAATGAGTATAAACACGACTAGGC</canonical>
            <polymorphic>AACACTCAATATTATCTCCTCCACACATGTCTACAATCCATGGAAGTCGATTGTAGGGTTCCCAATCTTCGCTCAAAGCCTTCCAATTCTCAGAATTCAAGTGTAAAACTTCAGATTTCAGCCGCTGAATCACAAAATCGACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATAAAAAACTAGGGACGGATAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCTTCGGCGCAGTTCACAGCACCCACTCGAATGGTTCCCTCGATTTCACGAGCGAATTTGCGCCACTGGAAAATTGAATTTTTGGAATTTTGATATTAGAAAAATTAGGAGCATTTTGAGCTAAAAATGATAAAAATTGGACCAGAATTGACAAAGTTATAGTTATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGSACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTCTAACTCAGAGTCTCGGTGTCATTGTAAACCAAAAACCAGCAACATCGACCAGGCATTGACAAAGTTATGGCTATTTTTGAAATGCCAAATTCTTTTTTTGGTAATTTGGCTCTAACTTCCTTACTCTTACTATAAACGAAATGAAACATAAATTGTCAAACTTGGCAGGTTCAGAGCTTCAAAATGAGTATAAACACGACTAGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTTGGAATTTCGTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAATTTATCAAACGAAAAAGTCA</pcr_primer_p2>
		<pcr_amplicon_size>390</pcr_amplicon_size>
		<canonical_amplicon>TATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTC</canonical_amplicon>
		<polymorphic_amplicon>TATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGSACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33594</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>112285</contig_pos>
        <strand>+</strand>
        <context>traatttgss[A/T]ygttsagrgc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGG</left_flank>
        <right_flank>CGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACTCAATATTATCTCCTCCACACATGTCTACAATCCATGGAAGTCGATTGTAGGGTTCCCAATCTTCGCTCAAAGCCTTCCAATTCTCAGAATTCAAGTGTAAAACTTCAGATTTCAGCCGCTGAATCACAAAATCGACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATAAAAAACTAGGGACGGATAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCTTCGGCGCAGTTCACAGCACCCACTCGAATGGTTCCCTCGATTTCACGAGCGAATTTGCGCCACTGGAAAATTGAATTTTTGGAATTTTGATATTAGAAAAATTAGGAGCATTTTGAGCTAAAAATGATAAAAATTGGACCAGAATTGACAAAGTTATAGTTATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTCTAACTCAGAGTCTCGGTGTCATTGTAAACCAAAAACCAGCAACATCGACCAGGCATTGACAAAGTTATGGCTATTTTTGAAATGCCAAATTCTTTTTTTGGTAATTTGGCTCTAACTTCCTTACTCTTACTATAAACGAAATGAAACATAAATTGTCAAACTTGGCAGGTTCAGAGCTTCAAAATGAGTATAAACACGACTAGGCT</canonical>
            <polymorphic>ACACTCAATATTATCTCCTCCACACATGTCTACAATCCATGGAAGTCGATTGTAGGGTTCCCAATCTTCGCTCAAAGCCTTCCAATTCTCAGAATTCAAGTGTAAAACTTCAGATTTCAGCCGCTGAATCACAAAATCGACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATAAAAAACTAGGGACGGATAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCTTCGGCGCAGTTCACAGCACCCACTCGAATGGTTCCCTCGATTTCACGAGCGAATTTGCGCCACTGGAAAATTGAATTTTTGGAATTTTGATATTAGAAAAATTAGGAGCATTTTGAGCTAAAAATGATAAAAATTGGACCAGAATTGACAAAGTTATAGTTATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGWCGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTCTAACTCAGAGTCTCGGTGTCATTGTAAACCAAAAACCAGCAACATCGACCAGGCATTGACAAAGTTATGGCTATTTTTGAAATGCCAAATTCTTTTTTTGGTAATTTGGCTCTAACTTCCTTACTCTTACTATAAACGAAATGAAACATAAATTGTCAAACTTGGCAGGTTCAGAGCTTCAAAATGAGTATAAACACGACTAGGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>500 348 152</canonical_bands>
                <polymorphic_bands>848 152</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTTTTGGAATTTCGTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAATTTATCAAACGAAAAAGTCA</pcr_primer_p2>
		<pcr_amplicon_size>390</pcr_amplicon_size>
		<canonical_amplicon>TATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTC</canonical_amplicon>
		<polymorphic_amplicon>TATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGWCGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33595</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>112286</contig_pos>
        <strand>+</strand>
        <context>raatttgssw[C/T]gttsagrgct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGA</left_flank>
        <right_flank>GTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACTCAATATTATCTCCTCCACACATGTCTACAATCCATGGAAGTCGATTGTAGGGTTCCCAATCTTCGCTCAAAGCCTTCCAATTCTCAGAATTCAAGTGTAAAACTTCAGATTTCAGCCGCTGAATCACAAAATCGACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATAAAAAACTAGGGACGGATAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCTTCGGCGCAGTTCACAGCACCCACTCGAATGGTTCCCTCGATTTCACGAGCGAATTTGCGCCACTGGAAAATTGAATTTTTGGAATTTTGATATTAGAAAAATTAGGAGCATTTTGAGCTAAAAATGATAAAAATTGGACCAGAATTGACAAAGTTATAGTTATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTCTAACTCAGAGTCTCGGTGTCATTGTAAACCAAAAACCAGCAACATCGACCAGGCATTGACAAAGTTATGGCTATTTTTGAAATGCCAAATTCTTTTTTTGGTAATTTGGCTCTAACTTCCTTACTCTTACTATAAACGAAATGAAACATAAATTGTCAAACTTGGCAGGTTCAGAGCTTCAAAATGAGTATAAACACGACTAGGCTC</canonical>
            <polymorphic>CACTCAATATTATCTCCTCCACACATGTCTACAATCCATGGAAGTCGATTGTAGGGTTCCCAATCTTCGCTCAAAGCCTTCCAATTCTCAGAATTCAAGTGTAAAACTTCAGATTTCAGCCGCTGAATCACAAAATCGACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATAAAAAACTAGGGACGGATAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCTTCGGCGCAGTTCACAGCACCCACTCGAATGGTTCCCTCGATTTCACGAGCGAATTTGCGCCACTGGAAAATTGAATTTTTGGAATTTTGATATTAGAAAAATTAGGAGCATTTTGAGCTAAAAATGATAAAAATTGGACCAGAATTGACAAAGTTATAGTTATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGAYGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTCTAACTCAGAGTCTCGGTGTCATTGTAAACCAAAAACCAGCAACATCGACCAGGCATTGACAAAGTTATGGCTATTTTTGAAATGCCAAATTCTTTTTTTGGTAATTTGGCTCTAACTTCCTTACTCTTACTATAAACGAAATGAAACATAAATTGTCAAACTTGGCAGGTTCAGAGCTTCAAAATGAGTATAAACACGACTAGGCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>501 348 151</canonical_bands>
                <polymorphic_bands>849 151</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTTTTGGAATTTCGTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAATTTATCAAACGAAAAAGTCA</pcr_primer_p2>
		<pcr_amplicon_size>390</pcr_amplicon_size>
		<canonical_amplicon>TATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTC</canonical_amplicon>
		<polymorphic_amplicon>TATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGAYGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33596</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>112290</contig_pos>
        <strand>+</strand>
        <context>ttgsswygtt[C/G]agrgctttaa</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTT</left_flank>
        <right_flank>AGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATATTATCTCCTCCACACATGTCTACAATCCATGGAAGTCGATTGTAGGGTTCCCAATCTTCGCTCAAAGCCTTCCAATTCTCAGAATTCAAGTGTAAAACTTCAGATTTCAGCCGCTGAATCACAAAATCGACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATAAAAAACTAGGGACGGATAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCTTCGGCGCAGTTCACAGCACCCACTCGAATGGTTCCCTCGATTTCACGAGCGAATTTGCGCCACTGGAAAATTGAATTTTTGGAATTTTGATATTAGAAAAATTAGGAGCATTTTGAGCTAAAAATGATAAAAATTGGACCAGAATTGACAAAGTTATAGTTATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTCTAACTCAGAGTCTCGGTGTCATTGTAAACCAAAAACCAGCAACATCGACCAGGCATTGACAAAGTTATGGCTATTTTTGAAATGCCAAATTCTTTTTTTGGTAATTTGGCTCTAACTTCCTTACTCTTACTATAAACGAAATGAAACATAAATTGTCAAACTTGGCAGGTTCAGAGCTTCAAAATGAGTATAAACACGACTAGGCTCCGCC</canonical>
            <polymorphic>CAATATTATCTCCTCCACACATGTCTACAATCCATGGAAGTCGATTGTAGGGTTCCCAATCTTCGCTCAAAGCCTTCCAATTCTCAGAATTCAAGTGTAAAACTTCAGATTTCAGCCGCTGAATCACAAAATCGACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATAAAAAACTAGGGACGGATAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCTTCGGCGCAGTTCACAGCACCCACTCGAATGGTTCCCTCGATTTCACGAGCGAATTTGCGCCACTGGAAAATTGAATTTTTGGAATTTTGATATTAGAAAAATTAGGAGCATTTTGAGCTAAAAATGATAAAAATTGGACCAGAATTGACAAAGTTATAGTTATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTSAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTCTAACTCAGAGTCTCGGTGTCATTGTAAACCAAAAACCAGCAACATCGACCAGGCATTGACAAAGTTATGGCTATTTTTGAAATGCCAAATTCTTTTTTTGGTAATTTGGCTCTAACTTCCTTACTCTTACTATAAACGAAATGAAACATAAATTGTCAAACTTGGCAGGTTCAGAGCTTCAAAATGAGTATAAACACGACTAGGCTCCGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTTGGAATTTCGTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAATTTATCAAACGAAAAAGTCA</pcr_primer_p2>
		<pcr_amplicon_size>390</pcr_amplicon_size>
		<canonical_amplicon>TATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTC</canonical_amplicon>
		<polymorphic_amplicon>TATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTSAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33597</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>112293</contig_pos>
        <strand>+</strand>
        <context>sswygttsag[A/G]gctttaaawt</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAG</left_flank>
        <right_flank>GCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTATCTCCTCCACACATGTCTACAATCCATGGAAGTCGATTGTAGGGTTCCCAATCTTCGCTCAAAGCCTTCCAATTCTCAGAATTCAAGTGTAAAACTTCAGATTTCAGCCGCTGAATCACAAAATCGACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATAAAAAACTAGGGACGGATAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCTTCGGCGCAGTTCACAGCACCCACTCGAATGGTTCCCTCGATTTCACGAGCGAATTTGCGCCACTGGAAAATTGAATTTTTGGAATTTTGATATTAGAAAAATTAGGAGCATTTTGAGCTAAAAATGATAAAAATTGGACCAGAATTGACAAAGTTATAGTTATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTCTAACTCAGAGTCTCGGTGTCATTGTAAACCAAAAACCAGCAACATCGACCAGGCATTGACAAAGTTATGGCTATTTTTGAAATGCCAAATTCTTTTTTTGGTAATTTGGCTCTAACTTCCTTACTCTTACTATAAACGAAATGAAACATAAATTGTCAAACTTGGCAGGTTCAGAGCTTCAAAATGAGTATAAACACGACTAGGCTCCGCCCAC</canonical>
            <polymorphic>TATTATCTCCTCCACACATGTCTACAATCCATGGAAGTCGATTGTAGGGTTCCCAATCTTCGCTCAAAGCCTTCCAATTCTCAGAATTCAAGTGTAAAACTTCAGATTTCAGCCGCTGAATCACAAAATCGACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATAAAAAACTAGGGACGGATAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCTTCGGCGCAGTTCACAGCACCCACTCGAATGGTTCCCTCGATTTCACGAGCGAATTTGCGCCACTGGAAAATTGAATTTTTGGAATTTTGATATTAGAAAAATTAGGAGCATTTTGAGCTAAAAATGATAAAAATTGGACCAGAATTGACAAAGTTATAGTTATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGRGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTCTAACTCAGAGTCTCGGTGTCATTGTAAACCAAAAACCAGCAACATCGACCAGGCATTGACAAAGTTATGGCTATTTTTGAAATGCCAAATTCTTTTTTTGGTAATTTGGCTCTAACTTCCTTACTCTTACTATAAACGAAATGAAACATAAATTGTCAAACTTGGCAGGTTCAGAGCTTCAAAATGAGTATAAACACGACTAGGCTCCGCCCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>241 233 87 73 69 67 61 43 39 28 27 22 10</canonical_bands>
                <polymorphic_bands>241 233 134 87 69 67 43 39 28 27 22 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTTTTGGAATTTCGTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAATTTATCAAACGAAAAAGTCA</pcr_primer_p2>
		<pcr_amplicon_size>390</pcr_amplicon_size>
		<canonical_amplicon>TATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTC</canonical_amplicon>
		<polymorphic_amplicon>TATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGRGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33598</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>112302</contig_pos>
        <strand>+</strand>
        <context>grgctttaaa[A/T]tgagtatamt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAA</left_flank>
        <right_flank>TGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCACACATGTCTACAATCCATGGAAGTCGATTGTAGGGTTCCCAATCTTCGCTCAAAGCCTTCCAATTCTCAGAATTCAAGTGTAAAACTTCAGATTTCAGCCGCTGAATCACAAAATCGACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATAAAAAACTAGGGACGGATAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCTTCGGCGCAGTTCACAGCACCCACTCGAATGGTTCCCTCGATTTCACGAGCGAATTTGCGCCACTGGAAAATTGAATTTTTGGAATTTTGATATTAGAAAAATTAGGAGCATTTTGAGCTAAAAATGATAAAAATTGGACCAGAATTGACAAAGTTATAGTTATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTCTAACTCAGAGTCTCGGTGTCATTGTAAACCAAAAACCAGCAACATCGACCAGGCATTGACAAAGTTATGGCTATTTTTGAAATGCCAAATTCTTTTTTTGGTAATTTGGCTCTAACTTCCTTACTCTTACTATAAACGAAATGAAACATAAATTGTCAAACTTGGCAGGTTCAGAGCTTCAAAATGAGTATAAACACGACTAGGCTCCGCCCACTTTGAGATT</canonical>
            <polymorphic>CTCCACACATGTCTACAATCCATGGAAGTCGATTGTAGGGTTCCCAATCTTCGCTCAAAGCCTTCCAATTCTCAGAATTCAAGTGTAAAACTTCAGATTTCAGCCGCTGAATCACAAAATCGACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATAAAAAACTAGGGACGGATAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCTTCGGCGCAGTTCACAGCACCCACTCGAATGGTTCCCTCGATTTCACGAGCGAATTTGCGCCACTGGAAAATTGAATTTTTGGAATTTTGATATTAGAAAAATTAGGAGCATTTTGAGCTAAAAATGATAAAAATTGGACCAGAATTGACAAAGTTATAGTTATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAWTGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTCTAACTCAGAGTCTCGGTGTCATTGTAAACCAAAAACCAGCAACATCGACCAGGCATTGACAAAGTTATGGCTATTTTTGAAATGCCAAATTCTTTTTTTGGTAATTTGGCTCTAACTTCCTTACTCTTACTATAAACGAAATGAAACATAAATTGTCAAACTTGGCAGGTTCAGAGCTTCAAAATGAGTATAAACACGACTAGGCTCCGCCCACTTTGAGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTTGGAATTTCGTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAATTTATCAAACGAAAAAGTCA</pcr_primer_p2>
		<pcr_amplicon_size>390</pcr_amplicon_size>
		<canonical_amplicon>TATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTC</canonical_amplicon>
		<polymorphic_amplicon>TATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAWTGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33599</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>112311</contig_pos>
        <strand>+</strand>
        <context>awtgagtata[A/C]tcatgmccta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAATGAGTATA</left_flank>
        <right_flank>TCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCTACAATCCATGGAAGTCGATTGTAGGGTTCCCAATCTTCGCTCAAAGCCTTCCAATTCTCAGAATTCAAGTGTAAAACTTCAGATTTCAGCCGCTGAATCACAAAATCGACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATAAAAAACTAGGGACGGATAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCTTCGGCGCAGTTCACAGCACCCACTCGAATGGTTCCCTCGATTTCACGAGCGAATTTGCGCCACTGGAAAATTGAATTTTTGGAATTTTGATATTAGAAAAATTAGGAGCATTTTGAGCTAAAAATGATAAAAATTGGACCAGAATTGACAAAGTTATAGTTATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTCTAACTCAGAGTCTCGGTGTCATTGTAAACCAAAAACCAGCAACATCGACCAGGCATTGACAAAGTTATGGCTATTTTTGAAATGCCAAATTCTTTTTTTGGTAATTTGGCTCTAACTTCCTTACTCTTACTATAAACGAAATGAAACATAAATTGTCAAACTTGGCAGGTTCAGAGCTTCAAAATGAGTATAAACACGACTAGGCTCCGCCCACTTTGAGATTTCGGTTTAA</canonical>
            <polymorphic>TGTCTACAATCCATGGAAGTCGATTGTAGGGTTCCCAATCTTCGCTCAAAGCCTTCCAATTCTCAGAATTCAAGTGTAAAACTTCAGATTTCAGCCGCTGAATCACAAAATCGACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATAAAAAACTAGGGACGGATAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCTTCGGCGCAGTTCACAGCACCCACTCGAATGGTTCCCTCGATTTCACGAGCGAATTTGCGCCACTGGAAAATTGAATTTTTGGAATTTTGATATTAGAAAAATTAGGAGCATTTTGAGCTAAAAATGATAAAAATTGGACCAGAATTGACAAAGTTATAGTTATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAMTCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTCTAACTCAGAGTCTCGGTGTCATTGTAAACCAAAAACCAGCAACATCGACCAGGCATTGACAAAGTTATGGCTATTTTTGAAATGCCAAATTCTTTTTTTGGTAATTTGGCTCTAACTTCCTTACTCTTACTATAAACGAAATGAAACATAAATTGTCAAACTTGGCAGGTTCAGAGCTTCAAAATGAGTATAAACACGACTAGGCTCCGCCCACTTTGAGATTTCGGTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTTGGAATTTCGTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAATTTATCAAACGAAAAAGTCA</pcr_primer_p2>
		<pcr_amplicon_size>390</pcr_amplicon_size>
		<canonical_amplicon>TATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTC</canonical_amplicon>
		<polymorphic_amplicon>TATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAMTCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33600</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>112317</contig_pos>
        <strand>+</strand>
        <context>tatamtcatg[A/C]cctactttgc</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAATCATG</left_flank>
        <right_flank>CCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATCCATGGAAGTCGATTGTAGGGTTCCCAATCTTCGCTCAAAGCCTTCCAATTCTCAGAATTCAAGTGTAAAACTTCAGATTTCAGCCGCTGAATCACAAAATCGACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATAAAAAACTAGGGACGGATAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCTTCGGCGCAGTTCACAGCACCCACTCGAATGGTTCCCTCGATTTCACGAGCGAATTTGCGCCACTGGAAAATTGAATTTTTGGAATTTTGATATTAGAAAAATTAGGAGCATTTTGAGCTAAAAATGATAAAAATTGGACCAGAATTGACAAAGTTATAGTTATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTCTAACTCAGAGTCTCGGTGTCATTGTAAACCAAAAACCAGCAACATCGACCAGGCATTGACAAAGTTATGGCTATTTTTGAAATGCCAAATTCTTTTTTTGGTAATTTGGCTCTAACTTCCTTACTCTTACTATAAACGAAATGAAACATAAATTGTCAAACTTGGCAGGTTCAGAGCTTCAAAATGAGTATAAACACGACTAGGCTCCGCCCACTTTGAGATTTCGGTTTAAAGGCGC</canonical>
            <polymorphic>CAATCCATGGAAGTCGATTGTAGGGTTCCCAATCTTCGCTCAAAGCCTTCCAATTCTCAGAATTCAAGTGTAAAACTTCAGATTTCAGCCGCTGAATCACAAAATCGACCATAAGTTCGACGTCACGATGCCCTTGATAGAATTCGCCGGTTGGATAAAAAACTAGGGACGGATAGGCGTTGACTCGTTGAGATTGACACAGTTGAGGATCTTCGGCGCAGTTCACAGCACCCACTCGAATGGTTCCCTCGATTTCACGAGCGAATTTGCGCCACTGGAAAATTGAATTTTTGGAATTTTGATATTAGAAAAATTAGGAGCATTTTGAGCTAAAAATGATAAAAATTGGACCAGAATTGACAAAGTTATAGTTATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAATCATGMCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTCTAACTCAGAGTCTCGGTGTCATTGTAAACCAAAAACCAGCAACATCGACCAGGCATTGACAAAGTTATGGCTATTTTTGAAATGCCAAATTCTTTTTTTGGTAATTTGGCTCTAACTTCCTTACTCTTACTATAAACGAAATGAAACATAAATTGTCAAACTTGGCAGGTTCAGAGCTTCAAAATGAGTATAAACACGACTAGGCTCCGCCCACTTTGAGATTTCGGTTTAAAGGCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTTGGAATTTCGTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAATTTATCAAACGAAAAAGTCA</pcr_primer_p2>
		<pcr_amplicon_size>390</pcr_amplicon_size>
		<canonical_amplicon>TATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAATCATGCCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTC</canonical_amplicon>
		<polymorphic_amplicon>TATTTTTGGAATTTCGTGTTTTTTGTCAACTAAAATCAAGATAGCTCCCCTATTATTCATCCGAATCAAATGAAACCTAGATTTTTGAATTTGGGACGTTGAGGGCTTTAAAATGAGTATAATCATGMCCTACTTTGCTCTTTAAGTGGTTCCGCTAGGATTACTGTAGTTTTCGCGGCTGGACCAAACTTGTAACAAACCAAGGCTTGTTTGTACTCATTTTGAAGCTCTAAACACGGCACAATTAAATCTTATATTTTCCAAACTTCAAATATGGTCCCACTGTGATTACTGTAGTTCTCGTGTTAGGGTTTGGTGCCAAATGATTTTTCCGAAAATTTTGAAACGGTCCCAAACTTCGAATTTTTGACTTTTTCGTTTGATAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33601</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>130100</contig_pos>
        <strand></strand>
        <context>CCACTCAGTT[T/C]CATGGCCGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCATGGCTATCGTGGAATCCTGTTATAATCACCATGAATCCCACTCAGTT</left_flank>
        <right_flank>CATGGCCGCTACAAATCCTACCATAGTGGCCATGGTGACGATTTTAACGT</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATCAAAATTCTGAAATTTCCATTTTTCCAGGGCAAATTCGGTGCCGACTGCAAATTCGAGTGCACTTGTCAAAACGGTGCTACGTGTGACAATACGAATGGAAAATGCCTGTGCAAATCGGGTTTCCATGGTGCTCTCTGCGAAAAACCGTGCTCCGAGGGCTTCTTTGGAGCCGGATGCACCCAGAAGTGTCAATGTTTGAATAATCAGGATTGTGATAGTGAGACTGGAGAGTGTAAATGCATTGGATGGACCGGCAAACAGTGTGATATCGGATGTGCAAGGGGACGATTCGGATTGCAGTGCAAACAGAAGTGCACGTGTCCAGGGTTGGAGTTTCAGGTGAGAATCTAGACTAAAAATGACCTAAAATCGGTCCGAATTGACCACAAAATGGCCGAAATCTCGATTTTCGGTACTATGGCTATCAACTTCCCCATATGGTACCATGGCTATCGTGGAATCCTGTTATAATCACCATGAATCCCACTCAGTTTCATGGCCGCTACAAATCCTACCATAGTGGCCATGGTGACGATTTTAACGTATGAGAACCATGATAGTACCAAACGGGGTCCATGTTGACCATAGATCCCGTTTGGTACCATGATGAGAACTATGAAACACTTTCCATAGTTGTCATGGGTCAAGTATGGTACCATGGTTACAGCAGTTACCATAGCCCACCATACATCTTACAGCAGTTACCATAATATCATATGCGATTCATGGTGACCATTGTACCATGTGAGAACTGTGGGTACCATGGTTACCATGAAATCCTACCATGTTTACCACAAATTCCGTTTGGTACCACGGTTACCATGGTAACATACAGGTTTCATAATAACCAAAGTAGTCATAGTGACCATTTTACGATATGAGAACCATGGAAGGATTTTATGGTAGCCATGGTACCCAACGGGATCAATAGTAACCACGGTTCTCAAATGGTATAATGGTCACCATGGGTCTCATATGATATTATGGTATCTGT</canonical>
            <polymorphic>AAAATCAAAATTCTGAAATTTCCATTTTTCCAGGGCAAATTCGGTGCCGACTGCAAATTCGAGTGCACTTGTCAAAACGGTGCTACGTGTGACAATACGAATGGAAAATGCCTGTGCAAATCGGGTTTCCATGGTGCTCTCTGCGAAAAACCGTGCTCCGAGGGCTTCTTTGGAGCCGGATGCACCCAGAAGTGTCAATGTTTGAATAATCAGGATTGTGATAGTGAGACTGGAGAGTGTAAATGCATTGGATGGACCGGCAAACAGTGTGATATCGGATGTGCAAGGGGACGATTCGGATTGCAGTGCAAACAGAAGTGCACGTGTCCAGGGTTGGAGTTTCAGGTGAGAATCTAGACTAAAAATGACCTAAAATCGGTCCGAATTGACCACAAAATGGCCGAAATCTCGATTTTCGGTACTATGGCTATCAACTTCCCCATATGGTACCATGGCTATCGTGGAATCCTGTTATAATCACCATGAATCCCACTCAGTTYCATGGCCGCTACAAATCCTACCATAGTGGCCATGGTGACGATTTTAACGTATGAGAACCATGATAGTACCAAACGGGGTCCATGTTGACCATAGATCCCGTTTGGTACCATGATGAGAACTATGAAACACTTTCCATAGTTGTCATGGGTCAAGTATGGTACCATGGTTACAGCAGTTACCATAGCCCACCATACATCTTACAGCAGTTACCATAATATCATATGCGATTCATGGTGACCATTGTACCATGTGAGAACTGTGGGTACCATGGTTACCATGAAATCCTACCATGTTTACCACAAATTCCGTTTGGTACCACGGTTACCATGGTAACATACAGGTTTCATAATAACCAAAGTAGTCATAGTGACCATTTTACGATATGAGAACCATGGAAGGATTTTATGGTAGCCATGGTACCCAACGGGATCAATAGTAACCACGGTTCTCAAATGGTATAATGGTCACCATGGGTCTCATATGATATTATGGTATCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCGGTACTATGGCTATCA</pcr_primer_p1>
		<pcr_primer_p2>TTTGGTACTATCATGGTTCTCAT</pcr_primer_p2>
		<pcr_amplicon_size>162</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCGGTACTATGGCTATCAACTTCCCCATATGGTACCATGGCTATCGTGGAATCCTGTTATAATCACCATGAATCCCACTCAGTTTCATGGCCGCTACAAATCCTACCATAGTGGCCATGGTGACGATTTTAACGTATGAGAACCATGATAGTACCAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCGGTACTATGGCTATCAACTTCCCCATATGGTACCATGGCTATCGTGGAATCCTGTTATAATCACCATGAATCCCACTCAGTTYCATGGCCGCTACAAATCCTACCATAGTGGCCATGGTGACGATTTTAACGTATGAGAACCATGATAGTACCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33602</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>130174</contig_pos>
        <strand></strand>
        <context>TAGTACCAAA[C/T]GGGGTCCATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGTGGCCATGGTGACGATTTTAACGTATGAGAACCATGATAGTACCAAA</left_flank>
        <right_flank>GGGGTCCATGTTGACCATAGATCCCGTTTGGTACCATGATGAGAACTATG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACGGTGCTACGTGTGACAATACGAATGGAAAATGCCTGTGCAAATCGGGTTTCCATGGTGCTCTCTGCGAAAAACCGTGCTCCGAGGGCTTCTTTGGAGCCGGATGCACCCAGAAGTGTCAATGTTTGAATAATCAGGATTGTGATAGTGAGACTGGAGAGTGTAAATGCATTGGATGGACCGGCAAACAGTGTGATATCGGATGTGCAAGGGGACGATTCGGATTGCAGTGCAAACAGAAGTGCACGTGTCCAGGGTTGGAGTTTCAGGTGAGAATCTAGACTAAAAATGACCTAAAATCGGTCCGAATTGACCACAAAATGGCCGAAATCTCGATTTTCGGTACTATGGCTATCAACTTCCCCATATGGTACCATGGCTATCGTGGAATCCTGTTATAATCACCATGAATCCCACTCAGTTTCATGGCCGCTACAAATCCTACCATAGTGGCCATGGTGACGATTTTAACGTATGAGAACCATGATAGTACCAAACGGGGTCCATGTTGACCATAGATCCCGTTTGGTACCATGATGAGAACTATGAAACACTTTCCATAGTTGTCATGGGTCAAGTATGGTACCATGGTTACAGCAGTTACCATAGCCCACCATACATCTTACAGCAGTTACCATAATATCATATGCGATTCATGGTGACCATTGTACCATGTGAGAACTGTGGGTACCATGGTTACCATGAAATCCTACCATGTTTACCACAAATTCCGTTTGGTACCACGGTTACCATGGTAACATACAGGTTTCATAATAACCAAAGTAGTCATAGTGACCATTTTACGATATGAGAACCATGGAAGGATTTTATGGTAGCCATGGTACCCAACGGGATCAATAGTAACCACGGTTCTCAAATGGTATAATGGTCACCATGGGTCTCATATGATATTATGGTATCTGTGGTAACTACGGTAACCATGGTACCATATTTGTTCCATGGTAACTATGGAAAGGCTTTCATAGTACTCATGGTAC</canonical>
            <polymorphic>AAACGGTGCTACGTGTGACAATACGAATGGAAAATGCCTGTGCAAATCGGGTTTCCATGGTGCTCTCTGCGAAAAACCGTGCTCCGAGGGCTTCTTTGGAGCCGGATGCACCCAGAAGTGTCAATGTTTGAATAATCAGGATTGTGATAGTGAGACTGGAGAGTGTAAATGCATTGGATGGACCGGCAAACAGTGTGATATCGGATGTGCAAGGGGACGATTCGGATTGCAGTGCAAACAGAAGTGCACGTGTCCAGGGTTGGAGTTTCAGGTGAGAATCTAGACTAAAAATGACCTAAAATCGGTCCGAATTGACCACAAAATGGCCGAAATCTCGATTTTCGGTACTATGGCTATCAACTTCCCCATATGGTACCATGGCTATCGTGGAATCCTGTTATAATCACCATGAATCCCACTCAGTTTCATGGCCGCTACAAATCCTACCATAGTGGCCATGGTGACGATTTTAACGTATGAGAACCATGATAGTACCAAAYGGGGTCCATGTTGACCATAGATCCCGTTTGGTACCATGATGAGAACTATGAAACACTTTCCATAGTTGTCATGGGTCAAGTATGGTACCATGGTTACAGCAGTTACCATAGCCCACCATACATCTTACAGCAGTTACCATAATATCATATGCGATTCATGGTGACCATTGTACCATGTGAGAACTGTGGGTACCATGGTTACCATGAAATCCTACCATGTTTACCACAAATTCCGTTTGGTACCACGGTTACCATGGTAACATACAGGTTTCATAATAACCAAAGTAGTCATAGTGACCATTTTACGATATGAGAACCATGGAAGGATTTTATGGTAGCCATGGTACCCAACGGGATCAATAGTAACCACGGTTCTCAAATGGTATAATGGTCACCATGGGTCTCATATGATATTATGGTATCTGTGGTAACTACGGTAACCATGGTACCATATTTGTTCCATGGTAACTATGGAAAGGCTTTCATAGTACTCATGGTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGCTACAAATCCTACCATA</pcr_primer_p1>
		<pcr_primer_p2>TACTATGGCTACCATCTTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>740</pcr_amplicon_size>
		<canonical_amplicon>CCGCTACAAATCCTACCATAGTGGCCATGGTGACGATTTTAACGTATGAGAACCATGATAGTACCAAACGGGGTCCATGTTGACCATAGA</canonical_amplicon>
		<polymorphic_amplicon>CCGCTACAAATCCTACCATAGTGGCCATGGTGACGATTTTAACGTATGAGAACCATGATAGTACCAAAYGGGGTCCATGTTGACCATAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33603</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>130205</contig_pos>
        <strand></strand>
        <context>atcccgtttg[G/C]taccatgatg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GAACCATGATAGTACCAAACGGGGTCCATGTTGACCATAGATCCCGTTTG</left_flank>
        <right_flank>TACCATGATGAGAACTATGAAACACTTTCCATAGTTGTCATGGGTCAAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATGCCTGTGCAAATCGGGTTTCCATGGTGCTCTCTGCGAAAAACCGTGCTCCGAGGGCTTCTTTGGAGCCGGATGCACCCAGAAGTGTCAATGTTTGAATAATCAGGATTGTGATAGTGAGACTGGAGAGTGTAAATGCATTGGATGGACCGGCAAACAGTGTGATATCGGATGTGCAAGGGGACGATTCGGATTGCAGTGCAAACAGAAGTGCACGTGTCCAGGGTTGGAGTTTCAGGTGAGAATCTAGACTAAAAATGACCTAAAATCGGTCCGAATTGACCACAAAATGGCCGAAATCTCGATTTTCGGTACTATGGCTATCAACTTCCCCATATGGTACCATGGCTATCGTGGAATCCTGTTATAATCACCATGAATCCCACTCAGTTTCATGGCCGCTACAAATCCTACCATAGTGGCCATGGTGACGATTTTAACGTATGAGAACCATGATAGTACCAAACGGGGTCCATGTTGACCATAGATCCCGTTTGGTACCATGATGAGAACTATGAAACACTTTCCATAGTTGTCATGGGTCAAGTATGGTACCATGGTTACAGCAGTTACCATAGCCCACCATACATCTTACAGCAGTTACCATAATATCATATGCGATTCATGGTGACCATTGTACCATGTGAGAACTGTGGGTACCATGGTTACCATGAAATCCTACCATGTTTACCACAAATTCCGTTTGGTACCACGGTTACCATGGTAACATACAGGTTTCATAATAACCAAAGTAGTCATAGTGACCATTTTACGATATGAGAACCATGGAAGGATTTTATGGTAGCCATGGTACCCAACGGGATCAATAGTAACCACGGTTCTCAAATGGTATAATGGTCACCATGGGTCTCATATGATATTATGGTATCTGTGGTAACTACGGTAACCATGGTACCATATTTGTTCCATGGTAACTATGGAAAGGCTTTCATAGTACTCATGGTACCAAGCATGGTTCCCATATAGTACTTTTGGTA</canonical>
            <polymorphic>AAATGCCTGTGCAAATCGGGTTTCCATGGTGCTCTCTGCGAAAAACCGTGCTCCGAGGGCTTCTTTGGAGCCGGATGCACCCAGAAGTGTCAATGTTTGAATAATCAGGATTGTGATAGTGAGACTGGAGAGTGTAAATGCATTGGATGGACCGGCAAACAGTGTGATATCGGATGTGCAAGGGGACGATTCGGATTGCAGTGCAAACAGAAGTGCACGTGTCCAGGGTTGGAGTTTCAGGTGAGAATCTAGACTAAAAATGACCTAAAATCGGTCCGAATTGACCACAAAATGGCCGAAATCTCGATTTTCGGTACTATGGCTATCAACTTCCCCATATGGTACCATGGCTATCGTGGAATCCTGTTATAATCACCATGAATCCCACTCAGTTTCATGGCCGCTACAAATCCTACCATAGTGGCCATGGTGACGATTTTAACGTATGAGAACCATGATAGTACCAAACGGGGTCCATGTTGACCATAGATCCCGTTTGSTACCATGATGAGAACTATGAAACACTTTCCATAGTTGTCATGGGTCAAGTATGGTACCATGGTTACAGCAGTTACCATAGCCCACCATACATCTTACAGCAGTTACCATAATATCATATGCGATTCATGGTGACCATTGTACCATGTGAGAACTGTGGGTACCATGGTTACCATGAAATCCTACCATGTTTACCACAAATTCCGTTTGGTACCACGGTTACCATGGTAACATACAGGTTTCATAATAACCAAAGTAGTCATAGTGACCATTTTACGATATGAGAACCATGGAAGGATTTTATGGTAGCCATGGTACCCAACGGGATCAATAGTAACCACGGTTCTCAAATGGTATAATGGTCACCATGGGTCTCATATGATATTATGGTATCTGTGGTAACTACGGTAACCATGGTACCATATTTGTTCCATGGTAACTATGGAAAGGCTTTCATAGTACTCATGGTACCAAGCATGGTTCCCATATAGTACTTTTGGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGTACC</site>
                <isoschizomers>
                    <enzyme>Acc65I</enzyme>
                    <enzyme>Asp718I</enzyme>
                    <enzyme>KpnI</enzyme>
                </isoschizomers>
                <canonical_bands>341 158 105 104 102 54 51 50 35</canonical_bands>
                <polymorphic_bands>341 212 105 104 102 51 50 35</polymorphic_bands>
            </assay>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>341 158 105 104 102 54 51 50 35</canonical_bands>
                <polymorphic_bands>341 212 105 104 102 51 50 35</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>315 119 104 102 85 54 50 42 39 28 23 20 10 9</canonical_bands>
                <polymorphic_bands>315 119 104 102 93 85 50 42 28 23 20 10 9</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>274 130 105 104 102 69 54 51 50 28 21 12</canonical_bands>
                <polymorphic_bands>274 130 105 104 102 82 69 51 50 21 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTATGAGAACCATGATAGTACC</pcr_primer_p1>
		<pcr_primer_p2>TACTATGGCTACCATCTTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>698</pcr_amplicon_size>
		<canonical_amplicon>CGTATGAGAACCATGATAGTACCAAACGGGGTCCATGTTGACCATAGATCCCGTTTGGTACCATGATGAGAACTATGAA</canonical_amplicon>
		<polymorphic_amplicon>CGTATGAGAACCATGATAGTACCAAACGGGGTCCATGTTGACCATAGATCCCGTTTGSTACCATGATGAGAACTATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33604</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>130308</contig_pos>
        <strand></strand>
        <context>cttacagcag[T/A]taccataata</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GGTACCATGGTTACAGCAGTTACCATAGCCCACCATACATCTTACAGCAG</left_flank>
        <right_flank>TACCATAATATCATATGCGATTCATGGTGACCATTGTACCATGTGAGAAC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAGGATTGTGATAGTGAGACTGGAGAGTGTAAATGCATTGGATGGACCGGCAAACAGTGTGATATCGGATGTGCAAGGGGACGATTCGGATTGCAGTGCAAACAGAAGTGCACGTGTCCAGGGTTGGAGTTTCAGGTGAGAATCTAGACTAAAAATGACCTAAAATCGGTCCGAATTGACCACAAAATGGCCGAAATCTCGATTTTCGGTACTATGGCTATCAACTTCCCCATATGGTACCATGGCTATCGTGGAATCCTGTTATAATCACCATGAATCCCACTCAGTTTCATGGCCGCTACAAATCCTACCATAGTGGCCATGGTGACGATTTTAACGTATGAGAACCATGATAGTACCAAACGGGGTCCATGTTGACCATAGATCCCGTTTGGTACCATGATGAGAACTATGAAACACTTTCCATAGTTGTCATGGGTCAAGTATGGTACCATGGTTACAGCAGTTACCATAGCCCACCATACATCTTACAGCAGTTACCATAATATCATATGCGATTCATGGTGACCATTGTACCATGTGAGAACTGTGGGTACCATGGTTACCATGAAATCCTACCATGTTTACCACAAATTCCGTTTGGTACCACGGTTACCATGGTAACATACAGGTTTCATAATAACCAAAGTAGTCATAGTGACCATTTTACGATATGAGAACCATGGAAGGATTTTATGGTAGCCATGGTACCCAACGGGATCAATAGTAACCACGGTTCTCAAATGGTATAATGGTCACCATGGGTCTCATATGATATTATGGTATCTGTGGTAACTACGGTAACCATGGTACCATATTTGTTCCATGGTAACTATGGAAAGGCTTTCATAGTACTCATGGTACCAAGCATGGTTCCCATATAGTACTTTTGGTACCATGGCCGCTATGATAGGATTTGTAGTGGCCATGGAACGGAGTGGAATTCATGGTAACCATGGAACCATATGGAATCAATGGTGTGGCAGGATTCCATGGTG</canonical>
            <polymorphic>ATCAGGATTGTGATAGTGAGACTGGAGAGTGTAAATGCATTGGATGGACCGGCAAACAGTGTGATATCGGATGTGCAAGGGGACGATTCGGATTGCAGTGCAAACAGAAGTGCACGTGTCCAGGGTTGGAGTTTCAGGTGAGAATCTAGACTAAAAATGACCTAAAATCGGTCCGAATTGACCACAAAATGGCCGAAATCTCGATTTTCGGTACTATGGCTATCAACTTCCCCATATGGTACCATGGCTATCGTGGAATCCTGTTATAATCACCATGAATCCCACTCAGTTTCATGGCCGCTACAAATCCTACCATAGTGGCCATGGTGACGATTTTAACGTATGAGAACCATGATAGTACCAAACGGGGTCCATGTTGACCATAGATCCCGTTTGGTACCATGATGAGAACTATGAAACACTTTCCATAGTTGTCATGGGTCAAGTATGGTACCATGGTTACAGCAGTTACCATAGCCCACCATACATCTTACAGCAGWTACCATAATATCATATGCGATTCATGGTGACCATTGTACCATGTGAGAACTGTGGGTACCATGGTTACCATGAAATCCTACCATGTTTACCACAAATTCCGTTTGGTACCACGGTTACCATGGTAACATACAGGTTTCATAATAACCAAAGTAGTCATAGTGACCATTTTACGATATGAGAACCATGGAAGGATTTTATGGTAGCCATGGTACCCAACGGGATCAATAGTAACCACGGTTCTCAAATGGTATAATGGTCACCATGGGTCTCATATGATATTATGGTATCTGTGGTAACTACGGTAACCATGGTACCATATTTGTTCCATGGTAACTATGGAAAGGCTTTCATAGTACTCATGGTACCAAGCATGGTTCCCATATAGTACTTTTGGTACCATGGCCGCTATGATAGGATTTGTAGTGGCCATGGAACGGAGTGGAATTCATGGTAACCATGGAACCATATGGAATCAATGGTGTGGCAGGATTCCATGGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>326 132 121 69 50 49 37 37 37 31 28 28 28 9 9 9</canonical_bands>
                <polymorphic_bands>326 132 121 69 59 50 49 37 37 37 28 28 9 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTATGAGAACCATGATAGTACC</pcr_primer_p1>
		<pcr_primer_p2>TACTATGGCTACCATCTTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>698</pcr_amplicon_size>
		<canonical_amplicon>CGTATGAGAACCATGATAGTACCAAACGGGGTCCATGTTGACCATAGATCCCGTTTGGTACCATGATGAGAACTATGAAACACTTTCCATAGTTGTCATGGGTCAAGTATGGTACCATGGTTACAGCAGTTACCATAGCCCACCATACATCTTACAGCAGTTACCATAATATCATATGCGAT</canonical_amplicon>
		<polymorphic_amplicon>CGTATGAGAACCATGATAGTACCAAACGGGGTCCATGTTGACCATAGATCCCGTTTGGTACCATGATGAGAACTATGAAACACTTTCCATAGTTGTCATGGGTCAAGTATGGTACCATGGTTACAGCAGTTACCATAGCCCACCATACATCTTACAGCAGWTACCATAATATCATATGCGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33605</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>130438</contig_pos>
        <strand></strand>
        <context>atggtaacat[A/T]caggtttcat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCATGTTTACCACAAATTCCGTTTGGTACCACGGTTACCATGGTAACAT</left_flank>
        <right_flank>CAGGTTTCATAATAACCAAAGTAGTCATAGTGACCATTTTACGATATGAG</right_flank>
        <qual_score>33</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTCAGGTGAGAATCTAGACTAAAAATGACCTAAAATCGGTCCGAATTGACCACAAAATGGCCGAAATCTCGATTTTCGGTACTATGGCTATCAACTTCCCCATATGGTACCATGGCTATCGTGGAATCCTGTTATAATCACCATGAATCCCACTCAGTTTCATGGCCGCTACAAATCCTACCATAGTGGCCATGGTGACGATTTTAACGTATGAGAACCATGATAGTACCAAACGGGGTCCATGTTGACCATAGATCCCGTTTGGTACCATGATGAGAACTATGAAACACTTTCCATAGTTGTCATGGGTCAAGTATGGTACCATGGTTACAGCAGTTACCATAGCCCACCATACATCTTACAGCAGTTACCATAATATCATATGCGATTCATGGTGACCATTGTACCATGTGAGAACTGTGGGTACCATGGTTACCATGAAATCCTACCATGTTTACCACAAATTCCGTTTGGTACCACGGTTACCATGGTAACATACAGGTTTCATAATAACCAAAGTAGTCATAGTGACCATTTTACGATATGAGAACCATGGAAGGATTTTATGGTAGCCATGGTACCCAACGGGATCAATAGTAACCACGGTTCTCAAATGGTATAATGGTCACCATGGGTCTCATATGATATTATGGTATCTGTGGTAACTACGGTAACCATGGTACCATATTTGTTCCATGGTAACTATGGAAAGGCTTTCATAGTACTCATGGTACCAAGCATGGTTCCCATATAGTACTTTTGGTACCATGGCCGCTATGATAGGATTTGTAGTGGCCATGGAACGGAGTGGAATTCATGGTAACCATGGAACCATATGGAATCAATGGTGTGGCAGGATTCCATGGTGACTATGGTACCATATGGAGAAGATGGTAGCCATAGTAACATATTTGACCGACAACTTTTTTCCCAATTTCCAGGACTCCAACGCCTCTTGCGACGCGAAAACGGGCGAATGCCAATGCGAGTCCGGCTAC</canonical>
            <polymorphic>GTTTCAGGTGAGAATCTAGACTAAAAATGACCTAAAATCGGTCCGAATTGACCACAAAATGGCCGAAATCTCGATTTTCGGTACTATGGCTATCAACTTCCCCATATGGTACCATGGCTATCGTGGAATCCTGTTATAATCACCATGAATCCCACTCAGTTTCATGGCCGCTACAAATCCTACCATAGTGGCCATGGTGACGATTTTAACGTATGAGAACCATGATAGTACCAAACGGGGTCCATGTTGACCATAGATCCCGTTTGGTACCATGATGAGAACTATGAAACACTTTCCATAGTTGTCATGGGTCAAGTATGGTACCATGGTTACAGCAGTTACCATAGCCCACCATACATCTTACAGCAGTTACCATAATATCATATGCGATTCATGGTGACCATTGTACCATGTGAGAACTGTGGGTACCATGGTTACCATGAAATCCTACCATGTTTACCACAAATTCCGTTTGGTACCACGGTTACCATGGTAACATWCAGGTTTCATAATAACCAAAGTAGTCATAGTGACCATTTTACGATATGAGAACCATGGAAGGATTTTATGGTAGCCATGGTACCCAACGGGATCAATAGTAACCACGGTTCTCAAATGGTATAATGGTCACCATGGGTCTCATATGATATTATGGTATCTGTGGTAACTACGGTAACCATGGTACCATATTTGTTCCATGGTAACTATGGAAAGGCTTTCATAGTACTCATGGTACCAAGCATGGTTCCCATATAGTACTTTTGGTACCATGGCCGCTATGATAGGATTTGTAGTGGCCATGGAACGGAGTGGAATTCATGGTAACCATGGAACCATATGGAATCAATGGTGTGGCAGGATTCCATGGTGACTATGGTACCATATGGAGAAGATGGTAGCCATAGTAACATATTTGACCGACAACTTTTTTCCCAATTTCCAGGACTCCAACGCCTCTTGCGACGCGAAAACGGGCGAATGCCAATGCGAGTCCGGCTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTATGAGAACCATGATAGTACC</pcr_primer_p1>
		<pcr_primer_p2>TACTATGGCTACCATCTTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>698</pcr_amplicon_size>
		<canonical_amplicon>CGTATGAGAACCATGATAGTACCAAACGGGGTCCATGTTGACCATAGATCCCGTTTGGTACCATGATGAGAACTATGAAACACTTTCCATAGTTGTCATGGGTCAAGTATGGTACCATGGTTACAGCAGTTACCATAGCCCACCATACATCTTACAGCAGTTACCATAATATCATATGCGATTCATGGTGACCATTGTACCATGTGAGAACTGTGGGTACCATGGTTACCATGAAATCCTACCATGTTTACCACAAATTCCGTTTGGTACCACGGTTACCATGGTAACATACAGGTTTCATAATAACCAAAGTAGTCATAGTGACCATTTTACGATATGAGAACCATGGAAGGATTTTATGGTAGCCATGGTACCCAACGGGATCAATAGTAACCACGGTTCTCAAATGGTATAATGGTCACCATGGGTCTCATATGATATTATGGTATCTGTGGTAACTACGGTAACCATGGTACCATATTTGTTCCATGGTAACTATGGAAAGGCTTTCATAGTACTCATGGTACCAAGCATGGTTCCCATATAGTACTTTTGGTACCATGGCCGCTATGATAGGATTTGTAGTGGCCATGGAACGGAGTGGAATTCATGGTAACCATGGAACCATATGGAATCAATGGTGTGGCAGGATTCCATGGTGACTATGGTACCATATGGAGAAGATGGTAGCCATAGTA</canonical_amplicon>
		<polymorphic_amplicon>CGTATGAGAACCATGATAGTACCAAACGGGGTCCATGTTGACCATAGATCCCGTTTGGTACCATGATGAGAACTATGAAACACTTTCCATAGTTGTCATGGGTCAAGTATGGTACCATGGTTACAGCAGTTACCATAGCCCACCATACATCTTACAGCAGTTACCATAATATCATATGCGATTCATGGTGACCATTGTACCATGTGAGAACTGTGGGTACCATGGTTACCATGAAATCCTACCATGTTTACCACAAATTCCGTTTGGTACCACGGTTACCATGGTAACATWCAGGTTTCATAATAACCAAAGTAGTCATAGTGACCATTTTACGATATGAGAACCATGGAAGGATTTTATGGTAGCCATGGTACCCAACGGGATCAATAGTAACCACGGTTCTCAAATGGTATAATGGTCACCATGGGTCTCATATGATATTATGGTATCTGTGGTAACTACGGTAACCATGGTACCATATTTGTTCCATGGTAACTATGGAAAGGCTTTCATAGTACTCATGGTACCAAGCATGGTTCCCATATAGTACTTTTGGTACCATGGCCGCTATGATAGGATTTGTAGTGGCCATGGAACGGAGTGGAATTCATGGTAACCATGGAACCATATGGAATCAATGGTGTGGCAGGATTCCATGGTGACTATGGTACCATATGGAGAAGATGGTAGCCATAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33606</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>131749</contig_pos>
        <strand></strand>
        <context>cctaaaatgg[C/T]ctaaaatagt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAAATTAGCTTAAAATAGTCTGAAATTGACTTAAAGTGACCTAAAATGG</left_flank>
        <right_flank>CTAAAATAGTTCAAATTTAGCTTGAAAAAGTCCAAAATCGGCCTACAAAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTACGGTCCGAATTGTGCGCTACAGTGTGAATGTAATGGAAGAGGGATTGGTTGTCATGGTTTCGATGGGAAATGCAACTGCGCTCCAGGCTACACAGGTAAACTATCATTTTCTAAAATAGTCTATTTTAGGATTATTTTAGGCCAATTTTGGACCATTTTTGGCTAATTTTAAGCAGTTTTAAGACCTTTCTAGGTCATTTTAAGCCAATTTTGGACAATTTTAAACCAATATGGACTCTATTTTCAGCCTTGCCTAATATCGTCCAAAAATTTCCCGAAATCGGTCCAACCATTCGCCTAAAAATGACGAAAGTTAGCATGAAATAGTCCAAAAATGGCCTAAAATCGTCCAAAATTTGTCTAAAATGGTCTGAAAATAGTCTAAAATAGACGAAAATATAGTCCGAAATCGGCTTAAATTGGCCTAAAATAGTCTACAGTAGACGCAAAATTAGCTTAAAATAGTCTGAAATTGACTTAAAGTGACCTAAAATGGCCTAAAATAGTTCAAATTTAGCTTGAAAAAGTCCAAAATCGGCCTACAAATATGTCTAAACTAGCTCAACATTGGCCTAAAGGTGCACTGTTTTTTGAATCATTCCCAGTTAATTTTAGACCATTTTAAGCCGATTTTTCAGGCTTCAGTGGTCCGGAATGGTCCAAAAAATGGTCTAAAACAATCCAAAAACGGCCTATTATGGTCTAAAATTGGTTAGAAATCGCCTAAAACAGTCTAAAATGCTCATGAATTGTCTTGAGGTAGTCCGAAAATGGTCCAAAAATGATCGAAAATTGCTCAAAACAGTAGGAAAAAAGTCCAAAAATTGTCTGAAATCGGCCTAAAATGGCCTAGAATTAGCTTAAAATGGTCCAAAATTGGCCCAAAATAATCCAAAACGGCCTAATATGGTTCAAAATTGGTTAGAAATCGCCCAAAATTGTCTAAAAATGACCGAAAATCCTCCGAAAATTGCTCGAAATAGTCCAAAACTAGTCC</canonical>
            <polymorphic>CTACGGTCCGAATTGTGCGCTACAGTGTGAATGTAATGGAAGAGGGATTGGTTGTCATGGTTTCGATGGGAAATGCAACTGCGCTCCAGGCTACACAGGTAAACTATCATTTTCTAAAATAGTCTATTTTAGGATTATTTTAGGCCAATTTTGGACCATTTTTGGCTAATTTTAAGCAGTTTTAAGACCTTTCTAGGTCATTTTAAGCCAATTTTGGACAATTTTAAACCAATATGGACTCTATTTTCAGCCTTGCCTAATATCGTCCAAAAATTTCCCGAAATCGGTCCAACCATTCGCCTAAAAATGACGAAAGTTAGCATGAAATAGTCCAAAAATGGCCTAAAATCGTCCAAAATTTGTCTAAAATGGTCTGAAAATAGTCTAAAATAGACGAAAATATAGTCCGAAATCGGCTTAAATTGGCCTAAAATAGTCTACAGTAGACGCAAAATTAGCTTAAAATAGTCTGAAATTGACTTAAAGTGACCTAAAATGGYCTAAAATAGTTCAAATTTAGCTTGAAAAAGTCCAAAATCGGCCTACAAATATGTCTAAACTAGCTCAACATTGGCCTAAAGGTGCACTGTTTTTTGAATCATTCCCAGTTAATTTTAGACCATTTTAAGCCGATTTTTCAGGCTTCAGTGGTCCGGAATGGTCCAAAAAATGGTCTAAAACAATCCAAAAACGGCCTATTATGGTCTAAAATTGGTTAGAAATCGCCTAAAACAGTCTAAAATGCTCATGAATTGTCTTGAGGTAGTCCGAAAATGGTCCAAAAATGATCGAAAATTGCTCAAAACAGTAGGAAAAAAGTCCAAAAATTGTCTGAAATCGGCCTAAAATGGCCTAGAATTAGCTTAAAATGGTCCAAAATTGGCCCAAAATAATCCAAAACGGCCTAATATGGTTCAAAATTGGTTAGAAATCGCCCAAAATTGTCTAAAAATGACCGAAAATCCTCCGAAAATTGCTCGAAATAGTCCAAAACTAGTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>197 147 144 120 97 85 73 42 33 32 20 10</canonical_bands>
                <polymorphic_bands>197 147 144 120 115 97 85 33 32 20 10</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>147 97 91 90 75 55 54 52 43 42 41 32 22 21 21 21 21 20 13 11 11 10 10</canonical_bands>
                <polymorphic_bands>147 97 91 90 75 62 55 54 52 43 42 32 22 21 21 21 20 13 11 11 10 10</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>277 197 149 144 85 75 73</canonical_bands>
                <polymorphic_bands>277 197 149 148 144 85</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCCTAATATCGTCCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GATTGATGCTCTTTGGCTTA</pcr_primer_p2>
		<pcr_amplicon_size>873</pcr_amplicon_size>
		<canonical_amplicon>TGCCTAATATCGTCCAAAAATTTCCCGAAATCGGTCCAACCATTCGCCTAAAAATGACGAAAGTTAGCATGAAATAGTCCAAAAATGGCCTAAAATCGTCCAAAATTTGTCTAAAATGGTCTGAAAATAGTCTAAAATAGACGAAAATATAGTCCGAAATCGGCTTAAATTGGCCTAAAATAGTCTACAGTAGACGCAAAATTAGCTTAAAATAGTCTGAAATTGACTTAAAGTGACCTAAAATGGCCTAAAATAGTTCAAATTTA</canonical_amplicon>
		<polymorphic_amplicon>TGCCTAATATCGTCCAAAAATTTCCCGAAATCGGTCCAACCATTCGCCTAAAAATGACGAAAGTTAGCATGAAATAGTCCAAAAATGGCCTAAAATCGTCCAAAATTTGTCTAAAATGGTCTGAAAATAGTCTAAAATAGACGAAAATATAGTCCGAAATCGGCTTAAATTGGCCTAAAATAGTCTACAGTAGACGCAAAATTAGCTTAAAATAGTCTGAAATTGACTTAAAGTGACCTAAAATGGYCTAAAATAGTTCAAATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33607</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>131926</contig_pos>
        <strand></strand>
        <context>aaaatggtct[A/G]aaacaatcca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGCCGATTTTTCAGGCTTCAGTGGTCCGGAATGGTCCAAAAAATGGTCT</left_flank>
        <right_flank>AAACAATCCAAAAACGGCCTATTATGGTCTAAAATTGGTTAGAAATCGCC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTTTAAGACCTTTCTAGGTCATTTTAAGCCAATTTTGGACAATTTTAAACCAATATGGACTCTATTTTCAGCCTTGCCTAATATCGTCCAAAAATTTCCCGAAATCGGTCCAACCATTCGCCTAAAAATGACGAAAGTTAGCATGAAATAGTCCAAAAATGGCCTAAAATCGTCCAAAATTTGTCTAAAATGGTCTGAAAATAGTCTAAAATAGACGAAAATATAGTCCGAAATCGGCTTAAATTGGCCTAAAATAGTCTACAGTAGACGCAAAATTAGCTTAAAATAGTCTGAAATTGACTTAAAGTGACCTAAAATGGCCTAAAATAGTTCAAATTTAGCTTGAAAAAGTCCAAAATCGGCCTACAAATATGTCTAAACTAGCTCAACATTGGCCTAAAGGTGCACTGTTTTTTGAATCATTCCCAGTTAATTTTAGACCATTTTAAGCCGATTTTTCAGGCTTCAGTGGTCCGGAATGGTCCAAAAAATGGTCTAAAACAATCCAAAAACGGCCTATTATGGTCTAAAATTGGTTAGAAATCGCCTAAAACAGTCTAAAATGCTCATGAATTGTCTTGAGGTAGTCCGAAAATGGTCCAAAAATGATCGAAAATTGCTCAAAACAGTAGGAAAAAAGTCCAAAAATTGTCTGAAATCGGCCTAAAATGGCCTAGAATTAGCTTAAAATGGTCCAAAATTGGCCCAAAATAATCCAAAACGGCCTAATATGGTTCAAAATTGGTTAGAAATCGCCCAAAATTGTCTAAAAATGACCGAAAATCCTCCGAAAATTGCTCGAAATAGTCCAAAACTAGTCCGAAATTGGCCTAAAATGGCCTAAAAAGGTCTCAAAACTGCCTAAAATTAGCTTAAAATGGTTCTAGAAGTGTCCAAATTTGGCCTAAAATAGACTATTTCAGCCAATAAGCCAAAGAGCATCAATCTAATGATTATTATTCACAGGTCATCGATGCGAACATCACTGCCCGGCGCTT</canonical>
            <polymorphic>AGTTTTAAGACCTTTCTAGGTCATTTTAAGCCAATTTTGGACAATTTTAAACCAATATGGACTCTATTTTCAGCCTTGCCTAATATCGTCCAAAAATTTCCCGAAATCGGTCCAACCATTCGCCTAAAAATGACGAAAGTTAGCATGAAATAGTCCAAAAATGGCCTAAAATCGTCCAAAATTTGTCTAAAATGGTCTGAAAATAGTCTAAAATAGACGAAAATATAGTCCGAAATCGGCTTAAATTGGCCTAAAATAGTCTACAGTAGACGCAAAATTAGCTTAAAATAGTCTGAAATTGACTTAAAGTGACCTAAAATGGCCTAAAATAGTTCAAATTTAGCTTGAAAAAGTCCAAAATCGGCCTACAAATATGTCTAAACTAGCTCAACATTGGCCTAAAGGTGCACTGTTTTTTGAATCATTCCCAGTTAATTTTAGACCATTTTAAGCCGATTTTTCAGGCTTCAGTGGTCCGGAATGGTCCAAAAAATGGTCTRAAACAATCCAAAAACGGCCTATTATGGTCTAAAATTGGTTAGAAATCGCCTAAAACAGTCTAAAATGCTCATGAATTGTCTTGAGGTAGTCCGAAAATGGTCCAAAAATGATCGAAAATTGCTCAAAACAGTAGGAAAAAAGTCCAAAAATTGTCTGAAATCGGCCTAAAATGGCCTAGAATTAGCTTAAAATGGTCCAAAATTGGCCCAAAATAATCCAAAACGGCCTAATATGGTTCAAAATTGGTTAGAAATCGCCCAAAATTGTCTAAAAATGACCGAAAATCCTCCGAAAATTGCTCGAAATAGTCCAAAACTAGTCCGAAATTGGCCTAAAATGGCCTAAAAAGGTCTCAAAACTGCCTAAAATTAGCTTAAAATGGTTCTAGAAGTGTCCAAATTTGGCCTAAAATAGACTATTTCAGCCAATAAGCCAAAGAGCATCAATCTAATGATTATTATTCACAGGTCATCGATGCGAACATCACTGCCCGGCGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCCTAATATCGTCCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GATTGATGCTCTTTGGCTTA</pcr_primer_p2>
		<pcr_amplicon_size>873</pcr_amplicon_size>
		<canonical_amplicon>TGCCTAATATCGTCCAAAAATTTCCCGAAATCGGTCCAACCATTCGCCTAAAAATGACGAAAGTTAGCATGAAATAGTCCAAAAATGGCCTAAAATCGTCCAAAATTTGTCTAAAATGGTCTGAAAATAGTCTAAAATAGACGAAAATATAGTCCGAAATCGGCTTAAATTGGCCTAAAATAGTCTACAGTAGACGCAAAATTAGCTTAAAATAGTCTGAAATTGACTTAAAGTGACCTAAAATGGCCTAAAATAGTTCAAATTTAGCTTGAAAAAGTCCAAAATCGGCCTACAAATATGTCTAAACTAGCTCAACATTGGCCTAAAGGTGCACTGTTTTTTGAATCATTCCCAGTTAATTTTAGACCATTTTAAGCCGATTTTTCAGGCTTCAGTGGTCCGGAATGGTCCAAAAAATGGTCTAAAACAATCCAAAAACGGCCTATTATGGTCTAAAATTGGTTAGAAATCGCCTAAAACAGTCTAAAATGCTCATGAATTGTCTTGAGGTAGTCCGAAAATGGTCCAAAAATGATCGAAAATTGCTCAAAACAGTAGGAAAAAAGTCCAAAAATTGTCTGAAATCGGCCTAAAATGGCCTAGAATTAGCTTAAAATGGTCCAAAATTGGCCCAAAATAATCCAAAACGGCCTAATATGGTTCAAAATTGGTTAGAAATCGCCCAAAATTGTCTAAAAATGACCGAAAATCCTCCGAAAATTGCTCGAAATAGTCCAAAACTAGTCCGAAATTGGCCTAAAATGGCCTAAAAAGGTCTCAAAACTGCCTAAAATTAGCTTAAAATGGTTCTAGAAGTGTCCAAATTTGGCCTAAAATAGACTATTTCAGCCAATAAGCCAAAGAGCATCAATC</canonical_amplicon>
		<polymorphic_amplicon>TGCCTAATATCGTCCAAAAATTTCCCGAAATCGGTCCAACCATTCGCCTAAAAATGACGAAAGTTAGCATGAAATAGTCCAAAAATGGCCTAAAATCGTCCAAAATTTGTCTAAAATGGTCTGAAAATAGTCTAAAATAGACGAAAATATAGTCCGAAATCGGCTTAAATTGGCCTAAAATAGTCTACAGTAGACGCAAAATTAGCTTAAAATAGTCTGAAATTGACTTAAAGTGACCTAAAATGGCCTAAAATAGTTCAAATTTAGCTTGAAAAAGTCCAAAATCGGCCTACAAATATGTCTAAACTAGCTCAACATTGGCCTAAAGGTGCACTGTTTTTTGAATCATTCCCAGTTAATTTTAGACCATTTTAAGCCGATTTTTCAGGCTTCAGTGGTCCGGAATGGTCCAAAAAATGGTCTRAAACAATCCAAAAACGGCCTATTATGGTCTAAAATTGGTTAGAAATCGCCTAAAACAGTCTAAAATGCTCATGAATTGTCTTGAGGTAGTCCGAAAATGGTCCAAAAATGATCGAAAATTGCTCAAAACAGTAGGAAAAAAGTCCAAAAATTGTCTGAAATCGGCCTAAAATGGCCTAGAATTAGCTTAAAATGGTCCAAAATTGGCCCAAAATAATCCAAAACGGCCTAATATGGTTCAAAATTGGTTAGAAATCGCCCAAAATTGTCTAAAAATGACCGAAAATCCTCCGAAAATTGCTCGAAATAGTCCAAAACTAGTCCGAAATTGGCCTAAAATGGCCTAAAAAGGTCTCAAAACTGCCTAAAATTAGCTTAAAATGGTTCTAGAAGTGTCCAAATTTGGCCTAAAATAGACTATTTCAGCCAATAAGCCAAAGAGCATCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33608</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>131966</contig_pos>
        <strand></strand>
        <context>taaaattggt[T/C]agwaatcgcc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAATGGTCTAAAACAATCCAAAAACGGCCTATTATGGTCTAAAATTGGT</left_flank>
        <right_flank>AGAAATCGCCTAAAACAGTCTAAAATGCTCATGAATTGTCTTGAGGTAGT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAATTTTAAACCAATATGGACTCTATTTTCAGCCTTGCCTAATATCGTCCAAAAATTTCCCGAAATCGGTCCAACCATTCGCCTAAAAATGACGAAAGTTAGCATGAAATAGTCCAAAAATGGCCTAAAATCGTCCAAAATTTGTCTAAAATGGTCTGAAAATAGTCTAAAATAGACGAAAATATAGTCCGAAATCGGCTTAAATTGGCCTAAAATAGTCTACAGTAGACGCAAAATTAGCTTAAAATAGTCTGAAATTGACTTAAAGTGACCTAAAATGGCCTAAAATAGTTCAAATTTAGCTTGAAAAAGTCCAAAATCGGCCTACAAATATGTCTAAACTAGCTCAACATTGGCCTAAAGGTGCACTGTTTTTTGAATCATTCCCAGTTAATTTTAGACCATTTTAAGCCGATTTTTCAGGCTTCAGTGGTCCGGAATGGTCCAAAAAATGGTCTAAAACAATCCAAAAACGGCCTATTATGGTCTAAAATTGGTTAGAAATCGCCTAAAACAGTCTAAAATGCTCATGAATTGTCTTGAGGTAGTCCGAAAATGGTCCAAAAATGATCGAAAATTGCTCAAAACAGTAGGAAAAAAGTCCAAAAATTGTCTGAAATCGGCCTAAAATGGCCTAGAATTAGCTTAAAATGGTCCAAAATTGGCCCAAAATAATCCAAAACGGCCTAATATGGTTCAAAATTGGTTAGAAATCGCCCAAAATTGTCTAAAAATGACCGAAAATCCTCCGAAAATTGCTCGAAATAGTCCAAAACTAGTCCGAAATTGGCCTAAAATGGCCTAAAAAGGTCTCAAAACTGCCTAAAATTAGCTTAAAATGGTTCTAGAAGTGTCCAAATTTGGCCTAAAATAGACTATTTCAGCCAATAAGCCAAAGAGCATCAATCTAATGATTATTATTCACAGGTCATCGATGCGAACATCACTGCCCGGCGCTTACCTTCGGAGCGAATTGCGAAAAACGATGTCAGTGTCCGG</canonical>
            <polymorphic>ACAATTTTAAACCAATATGGACTCTATTTTCAGCCTTGCCTAATATCGTCCAAAAATTTCCCGAAATCGGTCCAACCATTCGCCTAAAAATGACGAAAGTTAGCATGAAATAGTCCAAAAATGGCCTAAAATCGTCCAAAATTTGTCTAAAATGGTCTGAAAATAGTCTAAAATAGACGAAAATATAGTCCGAAATCGGCTTAAATTGGCCTAAAATAGTCTACAGTAGACGCAAAATTAGCTTAAAATAGTCTGAAATTGACTTAAAGTGACCTAAAATGGCCTAAAATAGTTCAAATTTAGCTTGAAAAAGTCCAAAATCGGCCTACAAATATGTCTAAACTAGCTCAACATTGGCCTAAAGGTGCACTGTTTTTTGAATCATTCCCAGTTAATTTTAGACCATTTTAAGCCGATTTTTCAGGCTTCAGTGGTCCGGAATGGTCCAAAAAATGGTCTAAAACAATCCAAAAACGGCCTATTATGGTCTAAAATTGGTYAGAAATCGCCTAAAACAGTCTAAAATGCTCATGAATTGTCTTGAGGTAGTCCGAAAATGGTCCAAAAATGATCGAAAATTGCTCAAAACAGTAGGAAAAAAGTCCAAAAATTGTCTGAAATCGGCCTAAAATGGCCTAGAATTAGCTTAAAATGGTCCAAAATTGGCCCAAAATAATCCAAAACGGCCTAATATGGTTCAAAATTGGTTAGAAATCGCCCAAAATTGTCTAAAAATGACCGAAAATCCTCCGAAAATTGCTCGAAATAGTCCAAAACTAGTCCGAAATTGGCCTAAAATGGCCTAAAAAGGTCTCAAAACTGCCTAAAATTAGCTTAAAATGGTTCTAGAAGTGTCCAAATTTGGCCTAAAATAGACTATTTCAGCCAATAAGCCAAAGAGCATCAATCTAATGATTATTATTCACAGGTCATCGATGCGAACATCACTGCCCGGCGCTTACCTTCGGAGCGAATTGCGAAAAACGATGTCAGTGTCCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCCTAATATCGTCCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GATTGATGCTCTTTGGCTTA</pcr_primer_p2>
		<pcr_amplicon_size>873</pcr_amplicon_size>
		<canonical_amplicon>TGCCTAATATCGTCCAAAAATTTCCCGAAATCGGTCCAACCATTCGCCTAAAAATGACGAAAGTTAGCATGAAATAGTCCAAAAATGGCCTAAAATCGTCCAAAATTTGTCTAAAATGGTCTGAAAATAGTCTAAAATAGACGAAAATATAGTCCGAAATCGGCTTAAATTGGCCTAAAATAGTCTACAGTAGACGCAAAATTAGCTTAAAATAGTCTGAAATTGACTTAAAGTGACCTAAAATGGCCTAAAATAGTTCAAATTTAGCTTGAAAAAGTCCAAAATCGGCCTACAAATATGTCTAAACTAGCTCAACATTGGCCTAAAGGTGCACTGTTTTTTGAATCATTCCCAGTTAATTTTAGACCATTTTAAGCCGATTTTTCAGGCTTCAGTGGTCCGGAATGGTCCAAAAAATGGTCTAAAACAATCCAAAAACGGCCTATTATGGTCTAAAATTGGTTAGAAATCGCCTAAAACAGTCTAAAATGCTCATGAATTGTCTTGAGGTAGTCCGAAAATGGTCCAAAAATGATCGAAAATTGCTCAAAACAGTAGGAAAAAAGTCCAAAAATTGTCTGAAATCGGCCTAAAATGGCCTAGAATTAGCTTAAAATGGTCCAAAATTGGCCCAAAATAATCCAAAACGGCCTAATATGGTTCAAAATTGGTTAGAAATCGCCCAAAATTGTCTAAAAATGACCGAAAATCCTCCGAAAATTGCTCGAAATAGTCCAAAACTAGTCCGAAATTGGCCTAAAATGGCCTAAAAAGGTCTCAAAACTGCCTAAAATTAGCTTAAAATGGTTCTAGAAGTGTCCAAATTTGGCCTAAAATAGACTATTTCAGCCAATAAGCCAAAGAGCATCAATC</canonical_amplicon>
		<polymorphic_amplicon>TGCCTAATATCGTCCAAAAATTTCCCGAAATCGGTCCAACCATTCGCCTAAAAATGACGAAAGTTAGCATGAAATAGTCCAAAAATGGCCTAAAATCGTCCAAAATTTGTCTAAAATGGTCTGAAAATAGTCTAAAATAGACGAAAATATAGTCCGAAATCGGCTTAAATTGGCCTAAAATAGTCTACAGTAGACGCAAAATTAGCTTAAAATAGTCTGAAATTGACTTAAAGTGACCTAAAATGGCCTAAAATAGTTCAAATTTAGCTTGAAAAAGTCCAAAATCGGCCTACAAATATGTCTAAACTAGCTCAACATTGGCCTAAAGGTGCACTGTTTTTTGAATCATTCCCAGTTAATTTTAGACCATTTTAAGCCGATTTTTCAGGCTTCAGTGGTCCGGAATGGTCCAAAAAATGGTCTAAAACAATCCAAAAACGGCCTATTATGGTCTAAAATTGGTYAGAAATCGCCTAAAACAGTCTAAAATGCTCATGAATTGTCTTGAGGTAGTCCGAAAATGGTCCAAAAATGATCGAAAATTGCTCAAAACAGTAGGAAAAAAGTCCAAAAATTGTCTGAAATCGGCCTAAAATGGCCTAGAATTAGCTTAAAATGGTCCAAAATTGGCCCAAAATAATCCAAAACGGCCTAATATGGTTCAAAATTGGTTAGAAATCGCCCAAAATTGTCTAAAAATGACCGAAAATCCTCCGAAAATTGCTCGAAATAGTCCAAAACTAGTCCGAAATTGGCCTAAAATGGCCTAAAAAGGTCTCAAAACTGCCTAAAATTAGCTTAAAATGGTTCTAGAAGTGTCCAAATTTGGCCTAAAATAGACTATTTCAGCCAATAAGCCAAAGAGCATCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33609</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>131969</contig_pos>
        <strand></strand>
        <context>aattggtyag[A/T]aatcgcctaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGGTCTAAAACAATCCAAAAACGGCCTATTATGGTCTAAAATTGGTTAG</left_flank>
        <right_flank>AATCGCCTAAAACAGTCTAAAATGCTCATGAATTGTCTTGAGGTAGTCCG</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTAAACCAATATGGACTCTATTTTCAGCCTTGCCTAATATCGTCCAAAAATTTCCCGAAATCGGTCCAACCATTCGCCTAAAAATGACGAAAGTTAGCATGAAATAGTCCAAAAATGGCCTAAAATCGTCCAAAATTTGTCTAAAATGGTCTGAAAATAGTCTAAAATAGACGAAAATATAGTCCGAAATCGGCTTAAATTGGCCTAAAATAGTCTACAGTAGACGCAAAATTAGCTTAAAATAGTCTGAAATTGACTTAAAGTGACCTAAAATGGCCTAAAATAGTTCAAATTTAGCTTGAAAAAGTCCAAAATCGGCCTACAAATATGTCTAAACTAGCTCAACATTGGCCTAAAGGTGCACTGTTTTTTGAATCATTCCCAGTTAATTTTAGACCATTTTAAGCCGATTTTTCAGGCTTCAGTGGTCCGGAATGGTCCAAAAAATGGTCTAAAACAATCCAAAAACGGCCTATTATGGTCTAAAATTGGTTAGAAATCGCCTAAAACAGTCTAAAATGCTCATGAATTGTCTTGAGGTAGTCCGAAAATGGTCCAAAAATGATCGAAAATTGCTCAAAACAGTAGGAAAAAAGTCCAAAAATTGTCTGAAATCGGCCTAAAATGGCCTAGAATTAGCTTAAAATGGTCCAAAATTGGCCCAAAATAATCCAAAACGGCCTAATATGGTTCAAAATTGGTTAGAAATCGCCCAAAATTGTCTAAAAATGACCGAAAATCCTCCGAAAATTGCTCGAAATAGTCCAAAACTAGTCCGAAATTGGCCTAAAATGGCCTAAAAAGGTCTCAAAACTGCCTAAAATTAGCTTAAAATGGTTCTAGAAGTGTCCAAATTTGGCCTAAAATAGACTATTTCAGCCAATAAGCCAAAGAGCATCAATCTAATGATTATTATTCACAGGTCATCGATGCGAACATCACTGCCCGGCGCTTACCTTCGGAGCGAATTGCGAAAAACGATGTCAGTGTCCGGCTG</canonical>
            <polymorphic>ATTTTAAACCAATATGGACTCTATTTTCAGCCTTGCCTAATATCGTCCAAAAATTTCCCGAAATCGGTCCAACCATTCGCCTAAAAATGACGAAAGTTAGCATGAAATAGTCCAAAAATGGCCTAAAATCGTCCAAAATTTGTCTAAAATGGTCTGAAAATAGTCTAAAATAGACGAAAATATAGTCCGAAATCGGCTTAAATTGGCCTAAAATAGTCTACAGTAGACGCAAAATTAGCTTAAAATAGTCTGAAATTGACTTAAAGTGACCTAAAATGGCCTAAAATAGTTCAAATTTAGCTTGAAAAAGTCCAAAATCGGCCTACAAATATGTCTAAACTAGCTCAACATTGGCCTAAAGGTGCACTGTTTTTTGAATCATTCCCAGTTAATTTTAGACCATTTTAAGCCGATTTTTCAGGCTTCAGTGGTCCGGAATGGTCCAAAAAATGGTCTAAAACAATCCAAAAACGGCCTATTATGGTCTAAAATTGGTTAGWAATCGCCTAAAACAGTCTAAAATGCTCATGAATTGTCTTGAGGTAGTCCGAAAATGGTCCAAAAATGATCGAAAATTGCTCAAAACAGTAGGAAAAAAGTCCAAAAATTGTCTGAAATCGGCCTAAAATGGCCTAGAATTAGCTTAAAATGGTCCAAAATTGGCCCAAAATAATCCAAAACGGCCTAATATGGTTCAAAATTGGTTAGAAATCGCCCAAAATTGTCTAAAAATGACCGAAAATCCTCCGAAAATTGCTCGAAATAGTCCAAAACTAGTCCGAAATTGGCCTAAAATGGCCTAAAAAGGTCTCAAAACTGCCTAAAATTAGCTTAAAATGGTTCTAGAAGTGTCCAAATTTGGCCTAAAATAGACTATTTCAGCCAATAAGCCAAAGAGCATCAATCTAATGATTATTATTCACAGGTCATCGATGCGAACATCACTGCCCGGCGCTTACCTTCGGAGCGAATTGCGAAAAACGATGTCAGTGTCCGGCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCCTAATATCGTCCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GATTGATGCTCTTTGGCTTA</pcr_primer_p2>
		<pcr_amplicon_size>873</pcr_amplicon_size>
		<canonical_amplicon>TGCCTAATATCGTCCAAAAATTTCCCGAAATCGGTCCAACCATTCGCCTAAAAATGACGAAAGTTAGCATGAAATAGTCCAAAAATGGCCTAAAATCGTCCAAAATTTGTCTAAAATGGTCTGAAAATAGTCTAAAATAGACGAAAATATAGTCCGAAATCGGCTTAAATTGGCCTAAAATAGTCTACAGTAGACGCAAAATTAGCTTAAAATAGTCTGAAATTGACTTAAAGTGACCTAAAATGGCCTAAAATAGTTCAAATTTAGCTTGAAAAAGTCCAAAATCGGCCTACAAATATGTCTAAACTAGCTCAACATTGGCCTAAAGGTGCACTGTTTTTTGAATCATTCCCAGTTAATTTTAGACCATTTTAAGCCGATTTTTCAGGCTTCAGTGGTCCGGAATGGTCCAAAAAATGGTCTAAAACAATCCAAAAACGGCCTATTATGGTCTAAAATTGGTTAGAAATCGCCTAAAACAGTCTAAAATGCTCATGAATTGTCTTGAGGTAGTCCGAAAATGGTCCAAAAATGATCGAAAATTGCTCAAAACAGTAGGAAAAAAGTCCAAAAATTGTCTGAAATCGGCCTAAAATGGCCTAGAATTAGCTTAAAATGGTCCAAAATTGGCCCAAAATAATCCAAAACGGCCTAATATGGTTCAAAATTGGTTAGAAATCGCCCAAAATTGTCTAAAAATGACCGAAAATCCTCCGAAAATTGCTCGAAATAGTCCAAAACTAGTCCGAAATTGGCCTAAAATGGCCTAAAAAGGTCTCAAAACTGCCTAAAATTAGCTTAAAATGGTTCTAGAAGTGTCCAAATTTGGCCTAAAATAGACTATTTCAGCCAATAAGCCAAAGAGCATCAATC</canonical_amplicon>
		<polymorphic_amplicon>TGCCTAATATCGTCCAAAAATTTCCCGAAATCGGTCCAACCATTCGCCTAAAAATGACGAAAGTTAGCATGAAATAGTCCAAAAATGGCCTAAAATCGTCCAAAATTTGTCTAAAATGGTCTGAAAATAGTCTAAAATAGACGAAAATATAGTCCGAAATCGGCTTAAATTGGCCTAAAATAGTCTACAGTAGACGCAAAATTAGCTTAAAATAGTCTGAAATTGACTTAAAGTGACCTAAAATGGCCTAAAATAGTTCAAATTTAGCTTGAAAAAGTCCAAAATCGGCCTACAAATATGTCTAAACTAGCTCAACATTGGCCTAAAGGTGCACTGTTTTTTGAATCATTCCCAGTTAATTTTAGACCATTTTAAGCCGATTTTTCAGGCTTCAGTGGTCCGGAATGGTCCAAAAAATGGTCTAAAACAATCCAAAAACGGCCTATTATGGTCTAAAATTGGTTAGWAATCGCCTAAAACAGTCTAAAATGCTCATGAATTGTCTTGAGGTAGTCCGAAAATGGTCCAAAAATGATCGAAAATTGCTCAAAACAGTAGGAAAAAAGTCCAAAAATTGTCTGAAATCGGCCTAAAATGGCCTAGAATTAGCTTAAAATGGTCCAAAATTGGCCCAAAATAATCCAAAACGGCCTAATATGGTTCAAAATTGGTTAGAAATCGCCCAAAATTGTCTAAAAATGACCGAAAATCCTCCGAAAATTGCTCGAAATAGTCCAAAACTAGTCCGAAATTGGCCTAAAATGGCCTAAAAAGGTCTCAAAACTGCCTAAAATTAGCTTAAAATGGTTCTAGAAGTGTCCAAATTTGGCCTAAAATAGACTATTTCAGCCAATAAGCCAAAGAGCATCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33610</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>152427</contig_pos>
        <strand>+</strand>
        <context>CTTCATTAAT[C/G]AAGAACGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACCGAGACTCCCAACAAGGAAAGCATTTGCCAGAGAATGTCTTCATTAAT</left_flank>
        <right_flank>AAGAACGAAAGTCGAGGTTCGAAGGCGATTACATACCGCCCTAGTTGTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAATTTGATCACAAATCTGAATTTCTGGGTCAAAATTAGTAGAAAAAGCCTCCAATATCGTCAAAAAACCACTAAATTTGGTGCCAAATTCACTTTTTAGAGTCAAAATAGTCCAAAAACTACCAAACTTACTAGGGAATGGTCAGAACTTATCTCGCGATCGGGAGATACAAATGGGTCCACGGAAAAGAAGAAGGTTGTTCCCTGATTCCAGAACAATTTTCAAATTTTGCTAAACGGCCCGGAGAGCCGAGATATTTGTGCTCAAAAATCAAGCTATAAACCATGTAAATCTCTCGCTTTTGGCTATTTGATTTGCTGCTTCCCCTCCCTATTTTCCTCCCTCGAACACCTCATTCTTATCCGCCACCGATGGCAACTACCAAATGTTGGGGAGAGGCCGAGTGGTGTGTGCTCATTGCTAGAAAGGTGAAATTGCGGGACCGAACCGAGACTCCCAACAAGGAAAGCATTTGCCAGAGAATGTCTTCATTAATGAAGAACGAAAGTCGAGGTTCGAAGGCGATTACATACCGCCCTAGTTGTGACCGTAAACGATGCCATCTCGCGATTCGGAGGGTTTATGCCCTGNNNNNNNNNNNGAAATCCAGAAATTCAGAAATTCAGTGCACTGATTACTAAAAAAATTTCAGACTAACATGAAAATGTATTTTTGAAACAGTAATTTTCTTTCAAATTTTGCGCTCTTTCTATACAGTACACGCTCTCCCCCGTTTCATTTCCGGACTGCAAGCCAGCGGAGCGCAATTGCATAACACGAGACGCAGACGAAAAACGAGGCGGCGGCAAATATGTCGATTTGAAACTTTTCAGCGTTAAATTGCTTGTTCTATTAAGTTTCACTGTGTCTTTATTGATTTTTACTTTGTTCCCCGTTTCTTTCTAATAAATAATACATTTTTCACAGTGTTTTGATTCCAGTGGCCCGTTACAAGTATGATTTGGGCTAAAAATCTAGATTTTTCAAATCAAATTTG</canonical>
            <polymorphic>CCAAATTTGATCACAAATCTGAATTTCTGGGTCAAAATTAGTAGAAAAAGCCTCCAATATCGTCAAAAAACCACTAAATTTGGTGCCAAATTCACTTTTTAGAGTCAAAATAGTCCAAAAACTACCAAACTTACTAGGGAATGGTCAGAACTTATCTCGCGATCGGGAGATACAAATGGGTCCACGGAAAAGAAGAAGGTTGTTCCCTGATTCCAGAACAATTTTCAAATTTTGCTAAACGGCCCGGAGAGCCGAGATATTTGTGCTCAAAAATCAAGCTATAAACCATGTAAATCTCTCGCTTTTGGCTATTTGATTTGCTGCTTCCCCTCCCTATTTTCCTCCCTCGAACACCTCATTCTTATCCGCCACCGATGGCAACTACCAAATGTTGGGGAGAGGCCGAGTGGTGTGTGCTCATTGCTAGAAAGGTGAAATTGCGGGACCGAACCGAGACTCCCAACAAGGAAAGCATTTGCCAGAGAATGTCTTCATTAATSAAGAACGAAAGTCGAGGTTCGAAGGCGATTACATACCGCCCTAGTTGTGACCGTAAACGATGCCATCTCGCGATTCGGAGGGTTTATGCCCTGNNNNNNNNNNNGAAATCCAGAAATTCAGAAATTCAGTGCACTGATTACTAAAAAAATTTCAGACTAACATGAAAATGTATTTTTGAAACAGTAATTTTCTTTCAAATTTTGCGCTCTTTCTATACAGTACACGCTCTCCCCCGTTTCATTTCCGGACTGCAAGCCAGCGGAGCGCAATTGCATAACACGAGACGCAGACGAAAAACGAGGCGGCGGCAAATATGTCGATTTGAAACTTTTCAGCGTTAAATTGCTTGTTCTATTAAGTTTCACTGTGTCTTTATTGATTTTTACTTTGTTCCCCGTTTCTTTCTAATAAATAATACATTTTTCACAGTGTTTTGATTCCAGTGGCCCGTTACAAGTATGATTTGGGCTAAAAATCTAGATTTTTCAAATCAAATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAGTCCAAAAACTACCAAACTT</pcr_primer_p1>
		<pcr_primer_p2>CGTTTACGGTCACAACTAGG</pcr_primer_p2>
		<pcr_amplicon_size>451</pcr_amplicon_size>
		<canonical_amplicon>AATAGTCCAAAAACTACCAAACTTACTAGGGAATGGTCAGAACTTATCTCGCGATCGGGAGATACAAATGGGTCCACGGAAAAGAAGAAGGTTGTTCCCTGATTCCAGAACAATTTTCAAATTTTGCTAAACGGCCCGGAGAGCCGAGATATTTGTGCTCAAAAATCAAGCTATAAACCATGTAAATCTCTCGCTTTTGGCTATTTGATTTGCTGCTTCCCCTCCCTATTTTCCTCCCTCGAACACCTCATTCTTATCCGCCACCGATGGCAACTACCAAATGTTGGGGAGAGGCCGAGTGGTGTGTGCTCATTGCTAGAAAGGTGAAATTGCGGGACCGAACCGAGACTCCCAACAAGGAAAGCATTTGCCAGAGAATGTCTTCATTAATGAAGAACGAAAGTCGAGGTTCGAAGGCGATTACATACCGCCCTAGTTGTGACCGTAAACG</canonical_amplicon>
		<polymorphic_amplicon>AATAGTCCAAAAACTACCAAACTTACTAGGGAATGGTCAGAACTTATCTCGCGATCGGGAGATACAAATGGGTCCACGGAAAAGAAGAAGGTTGTTCCCTGATTCCAGAACAATTTTCAAATTTTGCTAAACGGCCCGGAGAGCCGAGATATTTGTGCTCAAAAATCAAGCTATAAACCATGTAAATCTCTCGCTTTTGGCTATTTGATTTGCTGCTTCCCCTCCCTATTTTCCTCCCTCGAACACCTCATTCTTATCCGCCACCGATGGCAACTACCAAATGTTGGGGAGAGGCCGAGTGGTGTGTGCTCATTGCTAGAAAGGTGAAATTGCGGGACCGAACCGAGACTCCCAACAAGGAAAGCATTTGCCAGAGAATGTCTTCATTAATSAAGAACGAAAGTCGAGGTTCGAAGGCGATTACATACCGCCCTAGTTGTGACCGTAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33611</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>169827</contig_pos>
        <strand>+</strand>
        <context>TTCTTCAATT[A/T]CGATTTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTTAAAAACTATTTTTCGGACATTTTTGGGTCGAATTTTTTCTTCAATT</left_flank>
        <right_flank>CGATTTTTCAACAGAAATTCAGTAAGTTTCAGCAAAAAATGCCCTAAAAT</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATCAAAGATCACAGCCTAAAAAAGTGATGAAAATGAGCACTTTTTCCTAGAAAAAGTGCGAAAATCACTTCAAAAGACTTTAATAATAAACGGTTTGTGATCTAGAATTCGTGTTTTTTTTGTCAATTTTCAGATTTTTAGGTACATAAATTCAAAAAATTATTTACATAAAAGCATAAAAAGAGAGCAAATTATGGATAAGAGGAAACGAATTGGCGATCGGGACCGAAATTTTTGAATCTCCCGCCTTGGATTTGTCCGATTTTCGTTTGGATTCGGAACGAAGGCGAGTGAGCATACGGATGCGAGGACGATATTCTGAATTCAAAAAATTTGAATTTTTGACATTAATTTCGAATTATTCGATCTTTTTTCCCATAAATTCCAATTTTACAGCGAAAATTAGGATGAAAATTGACAAATTTTCGAAAAATCTTGGATTTTTGTGCTTAAAAACTATTTTTCGGACATTTTTGGGTCGAATTTTTTCTTCAATTTCGATTTTTCAACAGAAATTCAGTAAGTTTCAGCAAAAAATGCCCTAAAATGACTGAAATTCAACACACAACTCCTAAACCGCCCATATCTAGCATTTGCTCGTAAGGTGCTGCGCATCCTGTGCATGTTCACAGTGCACACCGGAGAATGTGCCGGATTTTACGAGCAAGTTTTTAAATTTTATTTTTAGATGAAAATTGGTGGATTTTGGCTTTAAATTGAAATTTTAAAGGGAAAAATGATGCAATTTTTGAAAAACTAGCTGTAAGTAATACGAAAAAGTCGAAATTTTTGATAAAATGTGAGAATTTACGGTAAAATCGATAAAAATCAATTTTTCACCAATTTTAGGCCAAGACTCACTACACGACCGCATCATTGCGTCCAACTCTTCTGTAATTTTCAGCGTTCGAACAGCTTCTAGAATTTTCGCAAATTTCGCATAAATGTTTCGAACGCGGCGGCTGGAAATTTGAATTTTTCGATTTTTTGGCTGAAAA</canonical>
            <polymorphic>TAATCAAAGATCACAGCCTAAAAAAGTGATGAAAATGAGCACTTTTTCCTAGAAAAAGTGCGAAAATCACTTCAAAAGACTTTAATAATAAACGGTTTGTGATCTAGAATTCGTGTTTTTTTTGTCAATTTTCAGATTTTTAGGTACATAAATTCAAAAAATTATTTACATAAAAGCATAAAAAGAGAGCAAATTATGGATAAGAGGAAACGAATTGGCGATCGGGACCGAAATTTTTGAATCTCCCGCCTTGGATTTGTCCGATTTTCGTTTGGATTCGGAACGAAGGCGAGTGAGCATACGGATGCGAGGACGATATTCTGAATTCAAAAAATTTGAATTTTTGACATTAATTTCGAATTATTCGATCTTTTTTCCCATAAATTCCAATTTTACAGCGAAAATTAGGATGAAAATTGACAAATTTTCGAAAAATCTTGGATTTTTGTGCTTAAAAACTATTTTTCGGACATTTTTGGGTCGAATTTTTTCTTCAATTWCGATTTTTCAACAGAAATTCAGTAAGTTTCAGCAAAAAATGCCCTAAAATGACTGAAATTCAACACACAACTCCTAAACCGCCCATATCTAGCATTTGCTCGTAAGGTGCTGCGCATCCTGTGCATGTTCACAGTGCACACCGGAGAATGTGCCGGATTTTACGAGCAAGTTTTTAAATTTTATTTTTAGATGAAAATTGGTGGATTTTGGCTTTAAATTGAAATTTTAAAGGGAAAAATGATGCAATTTTTGAAAAACTAGCTGTAAGTAATACGAAAAAGTCGAAATTTTTGATAAAATGTGAGAATTTACGGTAAAATCGATAAAAATCAATTTTTCACCAATTTTAGGCCAAGACTCACTACACGACCGCATCATTGCGTCCAACTCTTCTGTAATTTTCAGCGTTCGAACAGCTTCTAGAATTTTCGCAAATTTCGCATAAATGTTTCGAACGCGGCGGCTGGAAATTTGAATTTTTCGATTTTTTGGCTGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>357 283 89 63 53 42 38 30 19 17 9</canonical_bands>
                <polymorphic_bands>357 302 89 63 53 42 38 30 17 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCTTGGATTTTTGTGCTTA</pcr_primer_p1>
		<pcr_primer_p2>AAAATTTAAAAACTTGCTCGTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATCTTGGATTTTTGTGCTTAAAAACTATTTTTCGGACATTTTTGGGTCGAATTTTTTCTTCAATTTCGATTTTTCAACAGAAATTCAGTAAGTTTCAGCAAAAAATGCCCTAAAATGACTGAAATTCAACACACAACTCCTAAACCGCCCATATCTAGCATTTGCTCGTAAGGTGCTGCGCATCCTGTGCATGTTCACAGTGCACACCGGAGAATGTGCCGGATTTTACGAGCAAGTTTTTAAATTTT</canonical_amplicon>
		<polymorphic_amplicon>AAATCTTGGATTTTTGTGCTTAAAAACTATTTTTCGGACATTTTTGGGTCGAATTTTTTCTTCAATTWCGATTTTTCAACAGAAATTCAGTAAGTTTCAGCAAAAAATGCCCTAAAATGACTGAAATTCAACACACAACTCCTAAACCGCCCATATCTAGCATTTGCTCGTAAGGTGCTGCGCATCCTGTGCATGTTCACAGTGCACACCGGAGAATGTGCCGGATTTTACGAGCAAGTTTTTAAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33612</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>170050</contig_pos>
        <strand>+</strand>
        <context>TTTAAATTGA[A/G]RTTTTAAAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTAAATTTTATTTTTAGATGAAAATTGGTGGATTTTGGCTTTAAATTGA</left_flank>
        <right_flank>ATTTTAAAGGGAAAAATGATGCAATTTTTGAAAAACTAGCTGTAAGTAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGACCGAAATTTTTGAATCTCCCGCCTTGGATTTGTCCGATTTTCGTTTGGATTCGGAACGAAGGCGAGTGAGCATACGGATGCGAGGACGATATTCTGAATTCAAAAAATTTGAATTTTTGACATTAATTTCGAATTATTCGATCTTTTTTCCCATAAATTCCAATTTTACAGCGAAAATTAGGATGAAAATTGACAAATTTTCGAAAAATCTTGGATTTTTGTGCTTAAAAACTATTTTTCGGACATTTTTGGGTCGAATTTTTTCTTCAATTTCGATTTTTCAACAGAAATTCAGTAAGTTTCAGCAAAAAATGCCCTAAAATGACTGAAATTCAACACACAACTCCTAAACCGCCCATATCTAGCATTTGCTCGTAAGGTGCTGCGCATCCTGTGCATGTTCACAGTGCACACCGGAGAATGTGCCGGATTTTACGAGCAAGTTTTTAAATTTTATTTTTAGATGAAAATTGGTGGATTTTGGCTTTAAATTGAAATTTTAAAGGGAAAAATGATGCAATTTTTGAAAAACTAGCTGTAAGTAATACGAAAAAGTCGAAATTTTTGATAAAATGTGAGAATTTACGGTAAAATCGATAAAAATCAATTTTTCACCAATTTTAGGCCAAGACTCACTACACGACCGCATCATTGCGTCCAACTCTTCTGTAATTTTCAGCGTTCGAACAGCTTCTAGAATTTTCGCAAATTTCGCATAAATGTTTCGAACGCGGCGGCTGGAAATTTGAATTTTTCGATTTTTTGGCTGAAAATTCTTTCAGGTACCATTCCGGATAGTCTAGCTGAGCGAGTGTGATGCGAAAGCCAATAAGTTGCGTTTCAGACGGTGTCACCATGCAGACTGGAAAAAATTTCAGGATTTTTGAAAAAAAAAATTTCTTGAAAAATCAATTTTTAGCCCCAATTAACCTTCAAAAGCATGTAATCTCGACGATGCAATGTATTGCTCCGCCAATTGACAATTTTCCTCCACAT</canonical>
            <polymorphic>GGGACCGAAATTTTTGAATCTCCCGCCTTGGATTTGTCCGATTTTCGTTTGGATTCGGAACGAAGGCGAGTGAGCATACGGATGCGAGGACGATATTCTGAATTCAAAAAATTTGAATTTTTGACATTAATTTCGAATTATTCGATCTTTTTTCCCATAAATTCCAATTTTACAGCGAAAATTAGGATGAAAATTGACAAATTTTCGAAAAATCTTGGATTTTTGTGCTTAAAAACTATTTTTCGGACATTTTTGGGTCGAATTTTTTCTTCAATTTCGATTTTTCAACAGAAATTCAGTAAGTTTCAGCAAAAAATGCCCTAAAATGACTGAAATTCAACACACAACTCCTAAACCGCCCATATCTAGCATTTGCTCGTAAGGTGCTGCGCATCCTGTGCATGTTCACAGTGCACACCGGAGAATGTGCCGGATTTTACGAGCAAGTTTTTAAATTTTATTTTTAGATGAAAATTGGTGGATTTTGGCTTTAAATTGARATTTTAAAGGGAAAAATGATGCAATTTTTGAAAAACTAGCTGTAAGTAATACGAAAAAGTCGAAATTTTTGATAAAATGTGAGAATTTACGGTAAAATCGATAAAAATCAATTTTTCACCAATTTTAGGCCAAGACTCACTACACGACCGCATCATTGCGTCCAACTCTTCTGTAATTTTCAGCGTTCGAACAGCTTCTAGAATTTTCGCAAATTTCGCATAAATGTTTCGAACGCGGCGGCTGGAAATTTGAATTTTTCGATTTTTTGGCTGAAAATTCTTTCAGGTACCATTCCGGATAGTCTAGCTGAGCGAGTGTGATGCGAAAGCCAATAAGTTGCGTTTCAGACGGTGTCACCATGCAGACTGGAAAAAATTTCAGGATTTTTGAAAAAAAAAATTTCTTGAAAAATCAATTTTTAGCCCCAATTAACCTTCAAAAGCATGTAATCTCGACGATGCAATGTATTGCTCCGCCAATTGACAATTTTCCTCCACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>120 118 102 99 92 64 61 46 44 41 40 35 32 24 23 20 10 9 8 6 6</canonical_bands>
                <polymorphic_bands>120 118 110 102 99 92 61 44 41 40 35 32 24 23 20 10 9 8 6 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>120 99 92 61 54 51 41 41 35 27 26 24 24 23 23 21 20 20 19 16 15 14 13 13 12 12 11 10 9 8 8 7 7 6 6 6 6</canonical_bands>
                <polymorphic_bands>120 99 92 61 54 51 41 41 35 29 27 26 24 24 23 21 20 20 19 16 15 14 13 13 12 12 11 10 9 8 8 7 7 6 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAATGACTGAAATTCAACACA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTTCGACTTTTTCGTATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAAAATGACTGAAATTCAACACACAACTCCTAAACCGCCCATATCTAGCATTTGCTCGTAAGGTGCTGCGCATCCTGTGCATGTTCACAGTGCACACCGGAGAATGTGCCGGATTTTACGAGCAAGTTTTTAAATTTTATTTTTAGATGAAAATTGGTGGATTTTGGCTTTAAATTGAAATTTTAAAGGGAAAAATGATGCAATTTTTGAAAAACTAGCTGTAAGTAATACGAAAAAGTCGAAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TAAAATGACTGAAATTCAACACACAACTCCTAAACCGCCCATATCTAGCATTTGCTCGTAAGGTGCTGCGCATCCTGTGCATGTTCACAGTGCACACCGGAGAATGTGCCGGATTTTACGAGCAAGTTTTTAAATTTTATTTTTAGATGAAAATTGGTGGATTTTGGCTTTAAATTGARATTTTAAAGGGAAAAATGATGCAATTTTTGAAAAACTAGCTGTAAGTAATACGAAAAAGTCGAAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33613</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>170051</contig_pos>
        <strand>+</strand>
        <context>TTAAATTGAR[A/G]TTTTAAAGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAAATTTTATTTTTAGATGAAAATTGGTGGATTTTGGCTTTAAATTGAA</left_flank>
        <right_flank>TTTTAAAGGGAAAAATGATGCAATTTTTGAAAAACTAGCTGTAAGTAATA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGACCGAAATTTTTGAATCTCCCGCCTTGGATTTGTCCGATTTTCGTTTGGATTCGGAACGAAGGCGAGTGAGCATACGGATGCGAGGACGATATTCTGAATTCAAAAAATTTGAATTTTTGACATTAATTTCGAATTATTCGATCTTTTTTCCCATAAATTCCAATTTTACAGCGAAAATTAGGATGAAAATTGACAAATTTTCGAAAAATCTTGGATTTTTGTGCTTAAAAACTATTTTTCGGACATTTTTGGGTCGAATTTTTTCTTCAATTTCGATTTTTCAACAGAAATTCAGTAAGTTTCAGCAAAAAATGCCCTAAAATGACTGAAATTCAACACACAACTCCTAAACCGCCCATATCTAGCATTTGCTCGTAAGGTGCTGCGCATCCTGTGCATGTTCACAGTGCACACCGGAGAATGTGCCGGATTTTACGAGCAAGTTTTTAAATTTTATTTTTAGATGAAAATTGGTGGATTTTGGCTTTAAATTGAAATTTTAAAGGGAAAAATGATGCAATTTTTGAAAAACTAGCTGTAAGTAATACGAAAAAGTCGAAATTTTTGATAAAATGTGAGAATTTACGGTAAAATCGATAAAAATCAATTTTTCACCAATTTTAGGCCAAGACTCACTACACGACCGCATCATTGCGTCCAACTCTTCTGTAATTTTCAGCGTTCGAACAGCTTCTAGAATTTTCGCAAATTTCGCATAAATGTTTCGAACGCGGCGGCTGGAAATTTGAATTTTTCGATTTTTTGGCTGAAAATTCTTTCAGGTACCATTCCGGATAGTCTAGCTGAGCGAGTGTGATGCGAAAGCCAATAAGTTGCGTTTCAGACGGTGTCACCATGCAGACTGGAAAAAATTTCAGGATTTTTGAAAAAAAAAATTTCTTGAAAAATCAATTTTTAGCCCCAATTAACCTTCAAAAGCATGTAATCTCGACGATGCAATGTATTGCTCCGCCAATTGACAATTTTCCTCCACATA</canonical>
            <polymorphic>GGACCGAAATTTTTGAATCTCCCGCCTTGGATTTGTCCGATTTTCGTTTGGATTCGGAACGAAGGCGAGTGAGCATACGGATGCGAGGACGATATTCTGAATTCAAAAAATTTGAATTTTTGACATTAATTTCGAATTATTCGATCTTTTTTCCCATAAATTCCAATTTTACAGCGAAAATTAGGATGAAAATTGACAAATTTTCGAAAAATCTTGGATTTTTGTGCTTAAAAACTATTTTTCGGACATTTTTGGGTCGAATTTTTTCTTCAATTTCGATTTTTCAACAGAAATTCAGTAAGTTTCAGCAAAAAATGCCCTAAAATGACTGAAATTCAACACACAACTCCTAAACCGCCCATATCTAGCATTTGCTCGTAAGGTGCTGCGCATCCTGTGCATGTTCACAGTGCACACCGGAGAATGTGCCGGATTTTACGAGCAAGTTTTTAAATTTTATTTTTAGATGAAAATTGGTGGATTTTGGCTTTAAATTGAARTTTTAAAGGGAAAAATGATGCAATTTTTGAAAAACTAGCTGTAAGTAATACGAAAAAGTCGAAATTTTTGATAAAATGTGAGAATTTACGGTAAAATCGATAAAAATCAATTTTTCACCAATTTTAGGCCAAGACTCACTACACGACCGCATCATTGCGTCCAACTCTTCTGTAATTTTCAGCGTTCGAACAGCTTCTAGAATTTTCGCAAATTTCGCATAAATGTTTCGAACGCGGCGGCTGGAAATTTGAATTTTTCGATTTTTTGGCTGAAAATTCTTTCAGGTACCATTCCGGATAGTCTAGCTGAGCGAGTGTGATGCGAAAGCCAATAAGTTGCGTTTCAGACGGTGTCACCATGCAGACTGGAAAAAATTTCAGGATTTTTGAAAAAAAAAATTTCTTGAAAAATCAATTTTTAGCCCCAATTAACCTTCAAAAGCATGTAATCTCGACGATGCAATGTATTGCTCCGCCAATTGACAATTTTCCTCCACATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>120 118 103 99 92 64 61 46 44 41 40 35 32 24 23 20 10 9 7 6 6</canonical_bands>
                <polymorphic_bands>120 118 110 103 99 92 61 44 41 40 35 32 24 23 20 10 9 7 6 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>120 99 92 61 54 51 41 41 35 27 26 24 24 23 23 21 20 20 19 16 16 14 13 13 12 12 11 10 9 8 7 7 7 6 6 6 6</canonical_bands>
                <polymorphic_bands>120 99 92 61 54 51 41 41 35 29 27 26 24 24 23 21 20 20 19 16 16 14 13 13 12 12 11 10 9 8 7 7 7 6 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAATGACTGAAATTCAACACA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTTCGACTTTTTCGTATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAAAATGACTGAAATTCAACACACAACTCCTAAACCGCCCATATCTAGCATTTGCTCGTAAGGTGCTGCGCATCCTGTGCATGTTCACAGTGCACACCGGAGAATGTGCCGGATTTTACGAGCAAGTTTTTAAATTTTATTTTTAGATGAAAATTGGTGGATTTTGGCTTTAAATTGAAATTTTAAAGGGAAAAATGATGCAATTTTTGAAAAACTAGCTGTAAGTAATACGAAAAAGTCGAAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TAAAATGACTGAAATTCAACACACAACTCCTAAACCGCCCATATCTAGCATTTGCTCGTAAGGTGCTGCGCATCCTGTGCATGTTCACAGTGCACACCGGAGAATGTGCCGGATTTTACGAGCAAGTTTTTAAATTTTATTTTTAGATGAAAATTGGTGGATTTTGGCTTTAAATTGAARTTTTAAAGGGAAAAATGATGCAATTTTTGAAAAACTAGCTGTAAGTAATACGAAAAAGTCGAAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33614</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>170086</contig_pos>
        <strand>+</strand>
        <context>TTTTGAAAAA[C/T]TAGCTGTAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGCTTTAAATTGAAATTTTAAAGGGAAAAATGATGCAATTTTTGAAAAA</left_flank>
        <right_flank>TAGCTGTAAGTAATACGAAAAAGTCGAAATTTTTGATAAAATGTGAGAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCGATTTTCGTTTGGATTCGGAACGAAGGCGAGTGAGCATACGGATGCGAGGACGATATTCTGAATTCAAAAAATTTGAATTTTTGACATTAATTTCGAATTATTCGATCTTTTTTCCCATAAATTCCAATTTTACAGCGAAAATTAGGATGAAAATTGACAAATTTTCGAAAAATCTTGGATTTTTGTGCTTAAAAACTATTTTTCGGACATTTTTGGGTCGAATTTTTTCTTCAATTTCGATTTTTCAACAGAAATTCAGTAAGTTTCAGCAAAAAATGCCCTAAAATGACTGAAATTCAACACACAACTCCTAAACCGCCCATATCTAGCATTTGCTCGTAAGGTGCTGCGCATCCTGTGCATGTTCACAGTGCACACCGGAGAATGTGCCGGATTTTACGAGCAAGTTTTTAAATTTTATTTTTAGATGAAAATTGGTGGATTTTGGCTTTAAATTGAAATTTTAAAGGGAAAAATGATGCAATTTTTGAAAAACTAGCTGTAAGTAATACGAAAAAGTCGAAATTTTTGATAAAATGTGAGAATTTACGGTAAAATCGATAAAAATCAATTTTTCACCAATTTTAGGCCAAGACTCACTACACGACCGCATCATTGCGTCCAACTCTTCTGTAATTTTCAGCGTTCGAACAGCTTCTAGAATTTTCGCAAATTTCGCATAAATGTTTCGAACGCGGCGGCTGGAAATTTGAATTTTTCGATTTTTTGGCTGAAAATTCTTTCAGGTACCATTCCGGATAGTCTAGCTGAGCGAGTGTGATGCGAAAGCCAATAAGTTGCGTTTCAGACGGTGTCACCATGCAGACTGGAAAAAATTTCAGGATTTTTGAAAAAAAAAATTTCTTGAAAAATCAATTTTTAGCCCCAATTAACCTTCAAAAGCATGTAATCTCGACGATGCAATGTATTGCTCCGCCAATTGACAATTTTCCTCCACATATTTCTCAAATCGCTCATCCGGACACTTTAAATGCT</canonical>
            <polymorphic>TCCGATTTTCGTTTGGATTCGGAACGAAGGCGAGTGAGCATACGGATGCGAGGACGATATTCTGAATTCAAAAAATTTGAATTTTTGACATTAATTTCGAATTATTCGATCTTTTTTCCCATAAATTCCAATTTTACAGCGAAAATTAGGATGAAAATTGACAAATTTTCGAAAAATCTTGGATTTTTGTGCTTAAAAACTATTTTTCGGACATTTTTGGGTCGAATTTTTTCTTCAATTTCGATTTTTCAACAGAAATTCAGTAAGTTTCAGCAAAAAATGCCCTAAAATGACTGAAATTCAACACACAACTCCTAAACCGCCCATATCTAGCATTTGCTCGTAAGGTGCTGCGCATCCTGTGCATGTTCACAGTGCACACCGGAGAATGTGCCGGATTTTACGAGCAAGTTTTTAAATTTTATTTTTAGATGAAAATTGGTGGATTTTGGCTTTAAATTGAAATTTTAAAGGGAAAAATGATGCAATTTTTGAAAAAYTAGCTGTAAGTAATACGAAAAAGTCGAAATTTTTGATAAAATGTGAGAATTTACGGTAAAATCGATAAAAATCAATTTTTCACCAATTTTAGGCCAAGACTCACTACACGACCGCATCATTGCGTCCAACTCTTCTGTAATTTTCAGCGTTCGAACAGCTTCTAGAATTTTCGCAAATTTCGCATAAATGTTTCGAACGCGGCGGCTGGAAATTTGAATTTTTCGATTTTTTGGCTGAAAATTCTTTCAGGTACCATTCCGGATAGTCTAGCTGAGCGAGTGTGATGCGAAAGCCAATAAGTTGCGTTTCAGACGGTGTCACCATGCAGACTGGAAAAAATTTCAGGATTTTTGAAAAAAAAAATTTCTTGAAAAATCAATTTTTAGCCCCAATTAACCTTCAAAAGCATGTAATCTCGACGATGCAATGTATTGCTCCGCCAATTGACAATTTTCCTCCACATATTTCTCAAATCGCTCATCCGGACACTTTAAATGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>330 232 170 162 106</canonical_bands>
                <polymorphic_bands>332 330 232 106</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTTTACGAGCAAGTTTTTA</pcr_primer_p1>
		<pcr_primer_p2>TGAAAATTACAGAAGAGTTGGAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGATTTTACGAGCAAGTTTTTAAATTTTATTTTTAGATGAAAATTGGTGGATTTTGGCTTTAAATTGAAATTTTAAAGGGAAAAATGATGCAATTTTTGAAAAACTAGCTGTAAGTAATACGAAAAAGTCGAAATTTTTGATAAAATGTGAGAATTTACGGTAAAATCGATAAAAATCAATTTTTCACCAATTTTAGGCCAAGACTCACTACACGACCGCATCATTGCGTCCAACTCTTCTGTAATTTTCA</canonical_amplicon>
		<polymorphic_amplicon>GGATTTTACGAGCAAGTTTTTAAATTTTATTTTTAGATGAAAATTGGTGGATTTTGGCTTTAAATTGAAATTTTAAAGGGAAAAATGATGCAATTTTTGAAAAAYTAGCTGTAAGTAATACGAAAAAGTCGAAATTTTTGATAAAATGTGAGAATTTACGGTAAAATCGATAAAAATCAATTTTTCACCAATTTTAGGCCAAGACTCACTACACGACCGCATCATTGCGTCCAACTCTTCTGTAATTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33615</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>195035</contig_pos>
        <strand>+</strand>
        <context>TTTTTATTAT[C/T]TCAAATGATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTTCAAATTCCCGCCTTGCCGCTACCGCTAATTCCAATTTTTATTAT</left_flank>
        <right_flank>TCAAATGATCTATTTATATTCCCACCCCATCTCTCTTTTACATGCATGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTCCCGCCAAATTGAGAGACGCCGAGAAATTGATCCCCAAAATAATCAAATCATAGTTTTATCGCCTCCAATTTTTACCCAATTTTCCCCCATTTCTGTTGCATTCCTGTTGCATTCCTGTTGCAAAAATTTCCAAAAATTTGGGAAAATTCAAATTTCCCGTCCAATCTATCCGCCCCACCAATTTTTATCCGCGTTTTTTCTCTCTCTCTCTCTCCCCAAAACTGTGTATTTACCCCCCGCCAAAAACCAATTTTTTTCAACCAAATTAATCAATAATACAGTATTACTGTAAATTCTAAAAATTCGAAATTTCCAGGCCCCGCCCCCTTTTTTTCCTGTGCCATTTGTTTTTTCTGACGACGAGTTTTATATATATACAATACAATGATTTATATAAAAAACGAAGAAAACAATTTTTAGGAGAAAAATATTTTTTATCCCAAAAATTTCAAATTCCCGCCTTGCCGCTACCGCTAATTCCAATTTTTATTATCTCAAATGATCTATTTATATTCCCACCCCATCTCTCTTTTACATGCATGCACCCTCCCGATTTATCGATTTTTTCCCGGTCAATTTAGGCCAATATTCCACTTTTTTTCTTGAAATTTATCGATTTTTTTTTCGCTCTTTTCAAAAATAAAAACGTCGAGATTTCAATTTTTAATTTGTTTTTTTCAACAATTAAATTTAACCCATTTTCATCTCTTTTCGCCAGATGATCTCTGAAAAATTGATTCAAAACCGGAGAAAAAGAGCTGAAAATATTTTCATTTTCCGCCTAAAACATCACTGTAGATAAACTTTGAGGCATGCGCCTTTAATACAGTACCCAGACGATTTTTTAGGGTTTTGTTGGGATTTTGGAACGAAAAACCAACATTTTTCGTTTTTTTATTCATTAAAAACCGGAGAAAATGAGCTGAAAATATTTTCTACTGCGTTAATGATTACTGTAGAAAGTTTTGAAGCATGCGCCTTCAATACAGTACCC</canonical>
            <polymorphic>AAATTCCCGCCAAATTGAGAGACGCCGAGAAATTGATCCCCAAAATAATCAAATCATAGTTTTATCGCCTCCAATTTTTACCCAATTTTCCCCCATTTCTGTTGCATTCCTGTTGCATTCCTGTTGCAAAAATTTCCAAAAATTTGGGAAAATTCAAATTTCCCGTCCAATCTATCCGCCCCACCAATTTTTATCCGCGTTTTTTCTCTCTCTCTCTCTCCCCAAAACTGTGTATTTACCCCCCGCCAAAAACCAATTTTTTTCAACCAAATTAATCAATAATACAGTATTACTGTAAATTCTAAAAATTCGAAATTTCCAGGCCCCGCCCCCTTTTTTTCCTGTGCCATTTGTTTTTTCTGACGACGAGTTTTATATATATACAATACAATGATTTATATAAAAAACGAAGAAAACAATTTTTAGGAGAAAAATATTTTTTATCCCAAAAATTTCAAATTCCCGCCTTGCCGCTACCGCTAATTCCAATTTTTATTATYTCAAATGATCTATTTATATTCCCACCCCATCTCTCTTTTACATGCATGCACCCTCCCGATTTATCGATTTTTTCCCGGTCAATTTAGGCCAATATTCCACTTTTTTTCTTGAAATTTATCGATTTTTTTTTCGCTCTTTTCAAAAATAAAAACGTCGAGATTTCAATTTTTAATTTGTTTTTTTCAACAATTAAATTTAACCCATTTTCATCTCTTTTCGCCAGATGATCTCTGAAAAATTGATTCAAAACCGGAGAAAAAGAGCTGAAAATATTTTCATTTTCCGCCTAAAACATCACTGTAGATAAACTTTGAGGCATGCGCCTTTAATACAGTACCCAGACGATTTTTTAGGGTTTTGTTGGGATTTTGGAACGAAAAACCAACATTTTTCGTTTTTTTATTCATTAAAAACCGGAGAAAATGAGCTGAAAATATTTTCTACTGCGTTAATGATTACTGTAGAAAGTTTTGAAGCATGCGCCTTCAATACAGTACCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACGAAGAAAACAATTTTTAGG</pcr_primer_p1>
		<pcr_primer_p2>CGTTTTTATTTTTGAAAAGAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACGAAGAAAACAATTTTTAGGAGAAAAATATTTTTTATCCCAAAAATTTCAAATTCCCGCCTTGCCGCTACCGCTAATTCCAATTTTTATTATCTCAAATGATCTATTTATATTCCCACCCCATCTCTCTTTTACATGCATGCACCCTCCCGATTTATCGATTTTTTCCCGGTCAATTTAGGCCAATATTCCACTTTTTTTCTTGAAATTTATCGATTTTTTTTTCGCTCTTTTCAAAAATAAAAACG</canonical_amplicon>
		<polymorphic_amplicon>AAACGAAGAAAACAATTTTTAGGAGAAAAATATTTTTTATCCCAAAAATTTCAAATTCCCGCCTTGCCGCTACCGCTAATTCCAATTTTTATTATYTCAAATGATCTATTTATATTCCCACCCCATCTCTCTTTTACATGCATGCACCCTCCCGATTTATCGATTTTTTCCCGGTCAATTTAGGCCAATATTCCACTTTTTTTCTTGAAATTTATCGATTTTTTTTTCGCTCTTTTCAAAAATAAAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33616</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>195401</contig_pos>
        <strand>+</strand>
        <context>GTTTTGTTGG[A/G]ATTTTGGAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGCATGCGCCTTTAATACAGTACCCAGACGATTTTTTAGGGTTTTGTTGG</left_flank>
        <right_flank>ATTTTGGAACGAAAAACCAACATTTTTCGTTTTTTTATTCATTAAAAACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGTTTTATATATATACAATACAATGATTTATATAAAAAACGAAGAAAACAATTTTTAGGAGAAAAATATTTTTTATCCCAAAAATTTCAAATTCCCGCCTTGCCGCTACCGCTAATTCCAATTTTTATTATCTCAAATGATCTATTTATATTCCCACCCCATCTCTCTTTTACATGCATGCACCCTCCCGATTTATCGATTTTTTCCCGGTCAATTTAGGCCAATATTCCACTTTTTTTCTTGAAATTTATCGATTTTTTTTTCGCTCTTTTCAAAAATAAAAACGTCGAGATTTCAATTTTTAATTTGTTTTTTTCAACAATTAAATTTAACCCATTTTCATCTCTTTTCGCCAGATGATCTCTGAAAAATTGATTCAAAACCGGAGAAAAAGAGCTGAAAATATTTTCATTTTCCGCCTAAAACATCACTGTAGATAAACTTTGAGGCATGCGCCTTTAATACAGTACCCAGACGATTTTTTAGGGTTTTGTTGGGATTTTGGAACGAAAAACCAACATTTTTCGTTTTTTTATTCATTAAAAACCGGAGAAAATGAGCTGAAAATATTTTCTACTGCGTTAATGATTACTGTAGAAAGTTTTGAAGCATGCGCCTTCAATACAGTACCCAGAGGGTTTTTGTTTTGTTTTTGAGGAAACTTCCTCGCAAAAAAGGAATGAAAACTTTTACAAAGTCATTTTCTAGTAAAAAACAGCAATTTTCATTTAATTTTATCATTAAAAAGCGAAAAAAATGACCTGAAAACAGTTTCTATTGCATAAAAATCTACTGTAGAAAGTTTCGAAGCATGCGCCTTTAATACAGTACCCGGCTTTTTTGAGTGTTTTCGATAGATTTTCTGACGAAAAATCGGAAAAAAAACGCACAAAAAACGTATTTTTATTTATTAAAAACCGAGAAAAATGGCCTGAAAATGCATATTTTAGACTAAATATTCAGTTTTGAAGAACGCGCCTTCAAATACAGTAATAAAA</canonical>
            <polymorphic>CGAGTTTTATATATATACAATACAATGATTTATATAAAAAACGAAGAAAACAATTTTTAGGAGAAAAATATTTTTTATCCCAAAAATTTCAAATTCCCGCCTTGCCGCTACCGCTAATTCCAATTTTTATTATCTCAAATGATCTATTTATATTCCCACCCCATCTCTCTTTTACATGCATGCACCCTCCCGATTTATCGATTTTTTCCCGGTCAATTTAGGCCAATATTCCACTTTTTTTCTTGAAATTTATCGATTTTTTTTTCGCTCTTTTCAAAAATAAAAACGTCGAGATTTCAATTTTTAATTTGTTTTTTTCAACAATTAAATTTAACCCATTTTCATCTCTTTTCGCCAGATGATCTCTGAAAAATTGATTCAAAACCGGAGAAAAAGAGCTGAAAATATTTTCATTTTCCGCCTAAAACATCACTGTAGATAAACTTTGAGGCATGCGCCTTTAATACAGTACCCAGACGATTTTTTAGGGTTTTGTTGGRATTTTGGAACGAAAAACCAACATTTTTCGTTTTTTTATTCATTAAAAACCGGAGAAAATGAGCTGAAAATATTTTCTACTGCGTTAATGATTACTGTAGAAAGTTTTGAAGCATGCGCCTTCAATACAGTACCCAGAGGGTTTTTGTTTTGTTTTTGAGGAAACTTCCTCGCAAAAAAGGAATGAAAACTTTTACAAAGTCATTTTCTAGTAAAAAACAGCAATTTTCATTTAATTTTATCATTAAAAAGCGAAAAAAATGACCTGAAAACAGTTTCTATTGCATAAAAATCTACTGTAGAAAGTTTCGAAGCATGCGCCTTTAATACAGTACCCGGCTTTTTTGAGTGTTTTCGATAGATTTTCTGACGAAAAATCGGAAAAAAAACGCACAAAAAACGTATTTTTATTTATTAAAAACCGAGAAAAATGGCCTGAAAATGCATATTTTAGACTAAATATTCAGTTTTGAAGAACGCGCCTTCAAATACAGTAATAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCTGAAAAATTGATTCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TGCTTCAAAACTTTCTACAGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTCTGAAAAATTGATTCAAAACCGGAGAAAAAGAGCTGAAAATATTTTCATTTTCCGCCTAAAACATCACTGTAGATAAACTTTGAGGCATGCGCCTTTAATACAGTACCCAGACGATTTTTTAGGGTTTTGTTGGGATTTTGGAACGAAAAACCAACATTTTTCGTTTTTTTATTCATTAAAAACCGGAGAAAATGAGCTGAAAATATTTTCTACTGCGTTAATGATTACTGTAGAAAGTTTTGAAGCA</canonical_amplicon>
		<polymorphic_amplicon>TCTCTGAAAAATTGATTCAAAACCGGAGAAAAAGAGCTGAAAATATTTTCATTTTCCGCCTAAAACATCACTGTAGATAAACTTTGAGGCATGCGCCTTTAATACAGTACCCAGACGATTTTTTAGGGTTTTGTTGGRATTTTGGAACGAAAAACCAACATTTTTCGTTTTTTTATTCATTAAAAACCGGAGAAAATGAGCTGAAAATATTTTCTACTGCGTTAATGATTACTGTAGAAAGTTTTGAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33617</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>207979</contig_pos>
        <strand>+</strand>
        <context>TCGAATTTTC[C/T]GTATTTCCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGATCTGAATAAATTCTGAAGTGGCCGAGTCCTTTTCTTTCGAATTTTC</left_flank>
        <right_flank>GTATTTCCTTTTCCTCCTAACAATTGTGGCCGGGTGATTATTTCCACAGC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCTTCAAAATGAGCATAAACACGACTAAGTTTTGTCAATTTTGATTTTTGAGTTTAAAGGGATGTTTAAAGGCGCATGGACCCTCTAAAAATCGAAATTTACAGGAACCTAGTCATGGTTATACTCATTTTAAAGCTTAAAACACGCCTAGCTCAAAAAATTGATTTAATTCAAAATTGAACGAAAACTGAACAGATTATGGGCGTATTTAGATGTCTATGAGGATCAGGGATAATATATAATGCTGTAACCTTATTCAGCTAGACTGAGAACACCCAATTTCCAGTTTTCTACAAATTTTGAGTTCAGAAACAAGTAAAATATAGGGAAAATAACATATTTATTCACCGTAATATCGTCTAAACATATAATGGACATATAACTATCCAATTAATCTTTTGCCTCATTATAATCCGTTTCTAGGTTACCCATTCCTTAATTGTGTTGTTGATCTGAATAAATTCTGAAGTGGCCGAGTCCTTTTCTTTCGAATTTTCTGTATTTCCTTTTCCTCCTAACAATTGTGGCCGGGTGATTATTTCCACAGCTTCCTCTTCCGCTTCATCAATTGAATCCAATTTTACCGAAAACTTGGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGAAGGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATTGGCGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATGTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGG</canonical>
            <polymorphic>GAGCTTCAAAATGAGCATAAACACGACTAAGTTTTGTCAATTTTGATTTTTGAGTTTAAAGGGATGTTTAAAGGCGCATGGACCCTCTAAAAATCGAAATTTACAGGAACCTAGTCATGGTTATACTCATTTTAAAGCTTAAAACACGCCTAGCTCAAAAAATTGATTTAATTCAAAATTGAACGAAAACTGAACAGATTATGGGCGTATTTAGATGTCTATGAGGATCAGGGATAATATATAATGCTGTAACCTTATTCAGCTAGACTGAGAACACCCAATTTCCAGTTTTCTACAAATTTTGAGTTCAGAAACAAGTAAAATATAGGGAAAATAACATATTTATTCACCGTAATATCGTCTAAACATATAATGGACATATAACTATCCAATTAATCTTTTGCCTCATTATAATCCGTTTCTAGGTTACCCATTCCTTAATTGTGTTGTTGATCTGAATAAATTCTGAAGTGGCCGAGTCCTTTTCTTTCGAATTTTCYGTATTTCCTTTTCCTCCTAACAATTGTGGCCGGGTGATTATTTCCACAGCTTCCTCTTCCGCTTCATCAATTGAATCCAATTTTACCGAAAACTTGGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGAAGGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATTGGCGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATGTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGGTTACCCATTCCTTAATTGT</pcr_primer_p1>
		<pcr_primer_p2>TAAGTGAGCAATCTTCTCAAGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGGTTACCCATTCCTTAATTGTGTTGTTGATCTGAATAAATTCTGAAGTGGCCGAGTCCTTTTCTTTCGAATTTTCTGTATTTCCTTTTCCTCCTAACAATTGTGGCCGGGTGATTATTTCCACAGCTTCCTCTTCCGCTTCATCAATTGAATCCAATTTTACCGAAAACTTGGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTA</canonical_amplicon>
		<polymorphic_amplicon>TAGGTTACCCATTCCTTAATTGTGTTGTTGATCTGAATAAATTCTGAAGTGGCCGAGTCCTTTTCTTTCGAATTTTCYGTATTTCCTTTTCCTCCTAACAATTGTGGCCGGGTGATTATTTCCACAGCTTCCTCTTCCGCTTCATCAATTGAATCCAATTTTACCGAAAACTTGGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33618</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>208159</contig_pos>
        <strand>+</strand>
        <context>TTACGAGATT[C/T]GATATACGTY</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATT</left_flank>
        <right_flank>GATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACGAAAACTGAACAGATTATGGGCGTATTTAGATGTCTATGAGGATCAGGGATAATATATAATGCTGTAACCTTATTCAGCTAGACTGAGAACACCCAATTTCCAGTTTTCTACAAATTTTGAGTTCAGAAACAAGTAAAATATAGGGAAAATAACATATTTATTCACCGTAATATCGTCTAAACATATAATGGACATATAACTATCCAATTAATCTTTTGCCTCATTATAATCCGTTTCTAGGTTACCCATTCCTTAATTGTGTTGTTGATCTGAATAAATTCTGAAGTGGCCGAGTCCTTTTCTTTCGAATTTTCTGTATTTCCTTTTCCTCCTAACAATTGTGGCCGGGTGATTATTTCCACAGCTTCCTCTTCCGCTTCATCAATTGAATCCAATTTTACCGAAAACTTGGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGAAGGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATTGGCGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATGTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCATCCGCTTCAAAGAAGGGAATTATGACAGTTGTCGGCCTCGGATCGCGGAAACTCATGTAGTCGGAATGATTGAACGGCTTCTCCTTGTT</canonical>
            <polymorphic>GAACGAAAACTGAACAGATTATGGGCGTATTTAGATGTCTATGAGGATCAGGGATAATATATAATGCTGTAACCTTATTCAGCTAGACTGAGAACACCCAATTTCCAGTTTTCTACAAATTTTGAGTTCAGAAACAAGTAAAATATAGGGAAAATAACATATTTATTCACCGTAATATCGTCTAAACATATAATGGACATATAACTATCCAATTAATCTTTTGCCTCATTATAATCCGTTTCTAGGTTACCCATTCCTTAATTGTGTTGTTGATCTGAATAAATTCTGAAGTGGCCGAGTCCTTTTCTTTCGAATTTTCTGTATTTCCTTTTCCTCCTAACAATTGTGGCCGGGTGATTATTTCCACAGCTTCCTCTTCCGCTTCATCAATTGAATCCAATTTTACCGAAAACTTGGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTYGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGAAGGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATTGGCGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATGTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCATCCGCTTCAAAGAAGGGAATTATGACAGTTGTCGGCCTCGGATCGCGGAAACTCATGTAGTCGGAATGATTGAACGGCTTCTCCTTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>311 189 122 116 110 73 28 27 24</canonical_bands>
                <polymorphic_bands>311 305 122 110 73 28 27 24</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>297 193 154 103 96 72 69 16</canonical_bands>
                <polymorphic_bands>297 296 154 96 72 69 16</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>393 223 193 103 72 16</canonical_bands>
                <polymorphic_bands>393 296 223 72 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTATTTCCACAGCTTCCTCTT</pcr_primer_p1>
		<pcr_primer_p2>CAACAATTGTCTCCAATATCAG</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>ATTATTTCCACAGCTTCCTCTTCCGCTTCATCAATTGAATCCAATTTTACCGAAAACTTGGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTG</canonical_amplicon>
		<polymorphic_amplicon>ATTATTTCCACAGCTTCCTCTTCCGCTTCATCAATTGAATCCAATTTTACCGAAAACTTGGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTYGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33619</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>208169</contig_pos>
        <strand>+</strand>
        <context>YGATATACGT[C/T]CGTTTCTTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGT</left_flank>
        <right_flank>CGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAACAGATTATGGGCGTATTTAGATGTCTATGAGGATCAGGGATAATATATAATGCTGTAACCTTATTCAGCTAGACTGAGAACACCCAATTTCCAGTTTTCTACAAATTTTGAGTTCAGAAACAAGTAAAATATAGGGAAAATAACATATTTATTCACCGTAATATCGTCTAAACATATAATGGACATATAACTATCCAATTAATCTTTTGCCTCATTATAATCCGTTTCTAGGTTACCCATTCCTTAATTGTGTTGTTGATCTGAATAAATTCTGAAGTGGCCGAGTCCTTTTCTTTCGAATTTTCTGTATTTCCTTTTCCTCCTAACAATTGTGGCCGGGTGATTATTTCCACAGCTTCCTCTTCCGCTTCATCAATTGAATCCAATTTTACCGAAAACTTGGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGAAGGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATTGGCGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATGTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCATCCGCTTCAAAGAAGGGAATTATGACAGTTGTCGGCCTCGGATCGCGGAAACTCATGTAGTCGGAATGATTGAACGGCTTCTCCTTGTTTCCATTTGTC</canonical>
            <polymorphic>TGAACAGATTATGGGCGTATTTAGATGTCTATGAGGATCAGGGATAATATATAATGCTGTAACCTTATTCAGCTAGACTGAGAACACCCAATTTCCAGTTTTCTACAAATTTTGAGTTCAGAAACAAGTAAAATATAGGGAAAATAACATATTTATTCACCGTAATATCGTCTAAACATATAATGGACATATAACTATCCAATTAATCTTTTGCCTCATTATAATCCGTTTCTAGGTTACCCATTCCTTAATTGTGTTGTTGATCTGAATAAATTCTGAAGTGGCCGAGTCCTTTTCTTTCGAATTTTCTGTATTTCCTTTTCCTCCTAACAATTGTGGCCGGGTGATTATTTCCACAGCTTCCTCTTCCGCTTCATCAATTGAATCCAATTTTACCGAAAACTTGGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGTYCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGAAGGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATTGGCGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATGTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCATCCGCTTCAAAGAAGGGAATTATGACAGTTGTCGGCCTCGGATCGCGGAAACTCATGTAGTCGGAATGATTGAACGGCTTCTCCTTGTTTCCATTTGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>494 274 232</canonical_bands>
                <polymorphic_bands>768 232</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTATTTCCACAGCTTCCTCTT</pcr_primer_p1>
		<pcr_primer_p2>CAACAATTGTCTCCAATATCAG</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>ATTATTTCCACAGCTTCCTCTTCCGCTTCATCAATTGAATCCAATTTTACCGAAAACTTGGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTG</canonical_amplicon>
		<polymorphic_amplicon>ATTATTTCCACAGCTTCCTCTTCCGCTTCATCAATTGAATCCAATTTTACCGAAAACTTGGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGTYCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33620</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>208195</contig_pos>
        <strand>+</strand>
        <context>CTTCCATCTC[A/C]ARACTGAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTC</left_flank>
        <right_flank>AGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGAC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCTATGAGGATCAGGGATAATATATAATGCTGTAACCTTATTCAGCTAGACTGAGAACACCCAATTTCCAGTTTTCTACAAATTTTGAGTTCAGAAACAAGTAAAATATAGGGAAAATAACATATTTATTCACCGTAATATCGTCTAAACATATAATGGACATATAACTATCCAATTAATCTTTTGCCTCATTATAATCCGTTTCTAGGTTACCCATTCCTTAATTGTGTTGTTGATCTGAATAAATTCTGAAGTGGCCGAGTCCTTTTCTTTCGAATTTTCTGTATTTCCTTTTCCTCCTAACAATTGTGGCCGGGTGATTATTTCCACAGCTTCCTCTTCCGCTTCATCAATTGAATCCAATTTTACCGAAAACTTGGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGAAGGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATTGGCGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATGTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCATCCGCTTCAAAGAAGGGAATTATGACAGTTGTCGGCCTCGGATCGCGGAAACTCATGTAGTCGGAATGATTGAACGGCTTCTCCTTGTTTCCATTTGTCCATTTCTGGAAATCCGGAAAAAATAC</canonical>
            <polymorphic>GTCTATGAGGATCAGGGATAATATATAATGCTGTAACCTTATTCAGCTAGACTGAGAACACCCAATTTCCAGTTTTCTACAAATTTTGAGTTCAGAAACAAGTAAAATATAGGGAAAATAACATATTTATTCACCGTAATATCGTCTAAACATATAATGGACATATAACTATCCAATTAATCTTTTGCCTCATTATAATCCGTTTCTAGGTTACCCATTCCTTAATTGTGTTGTTGATCTGAATAAATTCTGAAGTGGCCGAGTCCTTTTCTTTCGAATTTTCTGTATTTCCTTTTCCTCCTAACAATTGTGGCCGGGTGATTATTTCCACAGCTTCCTCTTCCGCTTCATCAATTGAATCCAATTTTACCGAAAACTTGGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCMAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGAAGGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATTGGCGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATGTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCATCCGCTTCAAAGAAGGGAATTATGACAGTTGTCGGCCTCGGATCGCGGAAACTCATGTAGTCGGAATGATTGAACGGCTTCTCCTTGTTTCCATTTGTCCATTTCTGGAAATCCGGAAAAAATAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>503 429 61 7</canonical_bands>
                <polymorphic_bands>564 429 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTATTTCCACAGCTTCCTCTT</pcr_primer_p1>
		<pcr_primer_p2>CAACAATTGTCTCCAATATCAG</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>ATTATTTCCACAGCTTCCTCTTCCGCTTCATCAATTGAATCCAATTTTACCGAAAACTTGGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTG</canonical_amplicon>
		<polymorphic_amplicon>ATTATTTCCACAGCTTCCTCTTCCGCTTCATCAATTGAATCCAATTTTACCGAAAACTTGGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCMAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33621</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>208197</contig_pos>
        <strand>+</strand>
        <context>TCCATCTCMA[A/G]ACTGAACTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAA</left_flank>
        <right_flank>ACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATGAGGATCAGGGATAATATATAATGCTGTAACCTTATTCAGCTAGACTGAGAACACCCAATTTCCAGTTTTCTACAAATTTTGAGTTCAGAAACAAGTAAAATATAGGGAAAATAACATATTTATTCACCGTAATATCGTCTAAACATATAATGGACATATAACTATCCAATTAATCTTTTGCCTCATTATAATCCGTTTCTAGGTTACCCATTCCTTAATTGTGTTGTTGATCTGAATAAATTCTGAAGTGGCCGAGTCCTTTTCTTTCGAATTTTCTGTATTTCCTTTTCCTCCTAACAATTGTGGCCGGGTGATTATTTCCACAGCTTCCTCTTCCGCTTCATCAATTGAATCCAATTTTACCGAAAACTTGGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGAAGGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATTGGCGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATGTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCATCCGCTTCAAAGAAGGGAATTATGACAGTTGTCGGCCTCGGATCGCGGAAACTCATGTAGTCGGAATGATTGAACGGCTTCTCCTTGTTTCCATTTGTCCATTTCTGGAAATCCGGAAAAAATACTA</canonical>
            <polymorphic>CTATGAGGATCAGGGATAATATATAATGCTGTAACCTTATTCAGCTAGACTGAGAACACCCAATTTCCAGTTTTCTACAAATTTTGAGTTCAGAAACAAGTAAAATATAGGGAAAATAACATATTTATTCACCGTAATATCGTCTAAACATATAATGGACATATAACTATCCAATTAATCTTTTGCCTCATTATAATCCGTTTCTAGGTTACCCATTCCTTAATTGTGTTGTTGATCTGAATAAATTCTGAAGTGGCCGAGTCCTTTTCTTTCGAATTTTCTGTATTTCCTTTTCCTCCTAACAATTGTGGCCGGGTGATTATTTCCACAGCTTCCTCTTCCGCTTCATCAATTGAATCCAATTTTACCGAAAACTTGGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAARACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGAAGGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATTGGCGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATGTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCATCCGCTTCAAAGAAGGGAATTATGACAGTTGTCGGCCTCGGATCGCGGAAACTCATGTAGTCGGAATGATTGAACGGCTTCTCCTTGTTTCCATTTGTCCATTTCTGGAAATCCGGAAAAAATACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>497 134 108 107 63 54 15 14 8</canonical_bands>
                <polymorphic_bands>512 134 108 107 63 54 14 8</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>505 427 61 7</canonical_bands>
                <polymorphic_bands>566 427 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTATTTCCACAGCTTCCTCTT</pcr_primer_p1>
		<pcr_primer_p2>CAACAATTGTCTCCAATATCAG</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>ATTATTTCCACAGCTTCCTCTTCCGCTTCATCAATTGAATCCAATTTTACCGAAAACTTGGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTG</canonical_amplicon>
		<polymorphic_amplicon>ATTATTTCCACAGCTTCCTCTTCCGCTTCATCAATTGAATCCAATTTTACCGAAAACTTGGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAARACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33622</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>208213</contig_pos>
        <strand>+</strand>
        <context>ACTCTTCCAG[A/G]TCTCTGGCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAG</left_flank>
        <right_flank>TCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATATATAATGCTGTAACCTTATTCAGCTAGACTGAGAACACCCAATTTCCAGTTTTCTACAAATTTTGAGTTCAGAAACAAGTAAAATATAGGGAAAATAACATATTTATTCACCGTAATATCGTCTAAACATATAATGGACATATAACTATCCAATTAATCTTTTGCCTCATTATAATCCGTTTCTAGGTTACCCATTCCTTAATTGTGTTGTTGATCTGAATAAATTCTGAAGTGGCCGAGTCCTTTTCTTTCGAATTTTCTGTATTTCCTTTTCCTCCTAACAATTGTGGCCGGGTGATTATTTCCACAGCTTCCTCTTCCGCTTCATCAATTGAATCCAATTTTACCGAAAACTTGGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGAAGGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATTGGCGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATGTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCATCCGCTTCAAAGAAGGGAATTATGACAGTTGTCGGCCTCGGATCGCGGAAACTCATGTAGTCGGAATGATTGAACGGCTTCTCCTTGTTTCCATTTGTCCATTTCTGGAAATCCGGAAAAAATACTAGGTTTTGTGAAGTTTG</canonical>
            <polymorphic>TAATATATAATGCTGTAACCTTATTCAGCTAGACTGAGAACACCCAATTTCCAGTTTTCTACAAATTTTGAGTTCAGAAACAAGTAAAATATAGGGAAAATAACATATTTATTCACCGTAATATCGTCTAAACATATAATGGACATATAACTATCCAATTAATCTTTTGCCTCATTATAATCCGTTTCTAGGTTACCCATTCCTTAATTGTGTTGTTGATCTGAATAAATTCTGAAGTGGCCGAGTCCTTTTCTTTCGAATTTTCTGTATTTCCTTTTCCTCCTAACAATTGTGGCCGGGTGATTATTTCCACAGCTTCCTCTTCCGCTTCATCAATTGAATCCAATTTTACCGAAAACTTGGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGRTCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGAAGGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATTGGCGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATGTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCATCCGCTTCAAAGAAGGGAATTATGACAGTTGTCGGCCTCGGATCGCGGAAACTCATGTAGTCGGAATGATTGAACGGCTTCTCCTTGTTTCCATTTGTCCATTTCTGGAAATCCGGAAAAAATACTAGGTTTTGTGAAGTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>283 281 217 103 73 43</canonical_bands>
                <polymorphic_bands>324 283 217 103 73</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>481 134 108 107 63 54 30 15 8</canonical_bands>
                <polymorphic_bands>481 134 108 107 69 63 30 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGATTGCTCACTTACGAGATT</pcr_primer_p1>
		<pcr_primer_p2>AAATACAAAAGCAGTCATCTGTG</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>AAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGAAGGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATTGGCGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTT</canonical_amplicon>
		<polymorphic_amplicon>AAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGRTCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGAAGGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATTGGCGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33623</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>208268</contig_pos>
        <strand>+</strand>
        <context>CCCATCTTGA[A/G]GGTTGTCGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGCCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGA</left_flank>
        <right_flank>GGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTACAAATTTTGAGTTCAGAAACAAGTAAAATATAGGGAAAATAACATATTTATTCACCGTAATATCGTCTAAACATATAATGGACATATAACTATCCAATTAATCTTTTGCCTCATTATAATCCGTTTCTAGGTTACCCATTCCTTAATTGTGTTGTTGATCTGAATAAATTCTGAAGTGGCCGAGTCCTTTTCTTTCGAATTTTCTGTATTTCCTTTTCCTCCTAACAATTGTGGCCGGGTGATTATTTCCACAGCTTCCTCTTCCGCTTCATCAATTGAATCCAATTTTACCGAAAACTTGGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGAAGGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATTGGCGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATGTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCATCCGCTTCAAAGAAGGGAATTATGACAGTTGTCGGCCTCGGATCGCGGAAACTCATGTAGTCGGAATGATTGAACGGCTTCTCCTTGTTTCCATTTGTCCATTTCTGGAAATCCGGAAAAAATACTAGGTTTTGTGAAGTTTGATTTTTGGGTTCAAAGGCGCATGGACCCTCGAAAAATCGAATTTTATGGAACCAA</canonical>
            <polymorphic>TTTCTACAAATTTTGAGTTCAGAAACAAGTAAAATATAGGGAAAATAACATATTTATTCACCGTAATATCGTCTAAACATATAATGGACATATAACTATCCAATTAATCTTTTGCCTCATTATAATCCGTTTCTAGGTTACCCATTCCTTAATTGTGTTGTTGATCTGAATAAATTCTGAAGTGGCCGAGTCCTTTTCTTTCGAATTTTCTGTATTTCCTTTTCCTCCTAACAATTGTGGCCGGGTGATTATTTCCACAGCTTCCTCTTCCGCTTCATCAATTGAATCCAATTTTACCGAAAACTTGGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGARGGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATTGGCGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATGTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCATCCGCTTCAAAGAAGGGAATTATGACAGTTGTCGGCCTCGGATCGCGGAAACTCATGTAGTCGGAATGATTGAACGGCTTCTCCTTGTTTCCATTTGTCCATTTCTGGAAATCCGGAAAAAATACTAGGTTTTGTGAAGTTTGATTTTTGGGTTCAAAGGCGCATGGACCCTCGAAAAATCGAATTTTATGGAACCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGATTGCTCACTTACGAGATT</pcr_primer_p1>
		<pcr_primer_p2>AAATACAAAAGCAGTCATCTGTG</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>AAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGAAGGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATTGGCGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTT</canonical_amplicon>
		<polymorphic_amplicon>AAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGARGGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATTGGCGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33624</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>208371</contig_pos>
        <strand>+</strand>
        <context>GCCGAATCCA[A/T]CACAGATGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCA</left_flank>
        <right_flank>CACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAATCTTTTGCCTCATTATAATCCGTTTCTAGGTTACCCATTCCTTAATTGTGTTGTTGATCTGAATAAATTCTGAAGTGGCCGAGTCCTTTTCTTTCGAATTTTCTGTATTTCCTTTTCCTCCTAACAATTGTGGCCGGGTGATTATTTCCACAGCTTCCTCTTCCGCTTCATCAATTGAATCCAATTTTACCGAAAACTTGGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGAAGGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATTGGCGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATGTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCATCCGCTTCAAAGAAGGGAATTATGACAGTTGTCGGCCTCGGATCGCGGAAACTCATGTAGTCGGAATGATTGAACGGCTTCTCCTTGTTTCCATTTGTCCATTTCTGGAAATCCGGAAAAAATACTAGGTTTTGTGAAGTTTGATTTTTGGGTTCAAAGGCGCATGGACCCTCGAAAAATCGAATTTTATGGAACCAAGGCGTGTTTATACTTATTTTGAAGCTCATAACAAGCCAAACTCAAAAAACAATTCTTCAAAATTAACCTAAAATTAACCACGTTATGGCCTAAACCATTTTCA</canonical>
            <polymorphic>TTAATCTTTTGCCTCATTATAATCCGTTTCTAGGTTACCCATTCCTTAATTGTGTTGTTGATCTGAATAAATTCTGAAGTGGCCGAGTCCTTTTCTTTCGAATTTTCTGTATTTCCTTTTCCTCCTAACAATTGTGGCCGGGTGATTATTTCCACAGCTTCCTCTTCCGCTTCATCAATTGAATCCAATTTTACCGAAAACTTGGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGAAGGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATTGGCGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAWCACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATGTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCATCCGCTTCAAAGAAGGGAATTATGACAGTTGTCGGCCTCGGATCGCGGAAACTCATGTAGTCGGAATGATTGAACGGCTTCTCCTTGTTTCCATTTGTCCATTTCTGGAAATCCGGAAAAAATACTAGGTTTTGTGAAGTTTGATTTTTGGGTTCAAAGGCGCATGGACCCTCGAAAAATCGAATTTTATGGAACCAAGGCGTGTTTATACTTATTTTGAAGCTCATAACAAGCCAAACTCAAAAAACAATTCTTCAAAATTAACCTAAAATTAACCACGTTATGGCCTAAACCATTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAATCGTCCTCTGATATTG</pcr_primer_p1>
		<pcr_primer_p2>AAGAATTGGCTGAAGGACTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGAAGGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATTGGCGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATGTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTT</canonical_amplicon>
		<polymorphic_amplicon>CCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGAAGGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATTGGCGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAWCACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATGTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33625</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>208421</contig_pos>
        <strand>+</strand>
        <context>ATGGAAAAAT[G/T]TTTTTTTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAAT</left_flank>
        <right_flank>TTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTTCAATC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGTTGTTGATCTGAATAAATTCTGAAGTGGCCGAGTCCTTTTCTTTCGAATTTTCTGTATTTCCTTTTCCTCCTAACAATTGTGGCCGGGTGATTATTTCCACAGCTTCCTCTTCCGCTTCATCAATTGAATCCAATTTTACCGAAAACTTGGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGAAGGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATTGGCGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATGTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCATCCGCTTCAAAGAAGGGAATTATGACAGTTGTCGGCCTCGGATCGCGGAAACTCATGTAGTCGGAATGATTGAACGGCTTCTCCTTGTTTCCATTTGTCCATTTCTGGAAATCCGGAAAAAATACTAGGTTTTGTGAAGTTTGATTTTTGGGTTCAAAGGCGCATGGACCCTCGAAAAATCGAATTTTATGGAACCAAGGCGTGTTTATACTTATTTTGAAGCTCATAACAAGCCAAACTCAAAAAACAATTCTTCAAAATTAACCTAAAATTAACCACGTTATGGCCTAAACCATTTTCAATGCCAAAATTCGAAATTTTTCATAACATGGGTTAGGGAAAAAAAACCAG</canonical>
            <polymorphic>TGTGTTGTTGATCTGAATAAATTCTGAAGTGGCCGAGTCCTTTTCTTTCGAATTTTCTGTATTTCCTTTTCCTCCTAACAATTGTGGCCGGGTGATTATTTCCACAGCTTCCTCTTCCGCTTCATCAATTGAATCCAATTTTACCGAAAACTTGGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGAAGGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATTGGCGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATKTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCATCCGCTTCAAAGAAGGGAATTATGACAGTTGTCGGCCTCGGATCGCGGAAACTCATGTAGTCGGAATGATTGAACGGCTTCTCCTTGTTTCCATTTGTCCATTTCTGGAAATCCGGAAAAAATACTAGGTTTTGTGAAGTTTGATTTTTGGGTTCAAAGGCGCATGGACCCTCGAAAAATCGAATTTTATGGAACCAAGGCGTGTTTATACTTATTTTGAAGCTCATAACAAGCCAAACTCAAAAAACAATTCTTCAAAATTAACCTAAAATTAACCACGTTATGGCCTAAACCATTTTCAATGCCAAAATTCGAAATTTTTCATAACATGGGTTAGGGAAAAAAAACCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAAATTTCCACATTTCTGAT</pcr_primer_p1>
		<pcr_primer_p2>ATGGACAGTTTGTCCTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATGTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCAT</canonical_amplicon>
		<polymorphic_amplicon>AGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATKTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33626</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>208470</contig_pos>
        <strand>+</strand>
        <context>AATTCTTCAA[A/T]CTTCTTTGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTTCAA</left_flank>
        <right_flank>CTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTTTCTGTATTTCCTTTTCCTCCTAACAATTGTGGCCGGGTGATTATTTCCACAGCTTCCTCTTCCGCTTCATCAATTGAATCCAATTTTACCGAAAACTTGGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGAAGGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATTGGCGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATGTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCATCCGCTTCAAAGAAGGGAATTATGACAGTTGTCGGCCTCGGATCGCGGAAACTCATGTAGTCGGAATGATTGAACGGCTTCTCCTTGTTTCCATTTGTCCATTTCTGGAAATCCGGAAAAAATACTAGGTTTTGTGAAGTTTGATTTTTGGGTTCAAAGGCGCATGGACCCTCGAAAAATCGAATTTTATGGAACCAAGGCGTGTTTATACTTATTTTGAAGCTCATAACAAGCCAAACTCAAAAAACAATTCTTCAAAATTAACCTAAAATTAACCACGTTATGGCCTAAACCATTTTCAATGCCAAAATTCGAAATTTTTCATAACATGGGTTAGGGAAAAAAAACCAGGCCCGCAATTAATTAATATTTGAACTCGTCTTCTTCGGAAATCTCAAGA</canonical>
            <polymorphic>GAATTTTCTGTATTTCCTTTTCCTCCTAACAATTGTGGCCGGGTGATTATTTCCACAGCTTCCTCTTCCGCTTCATCAATTGAATCCAATTTTACCGAAAACTTGGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGAAGGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATTGGCGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATGTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTTCAAWCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCATCCGCTTCAAAGAAGGGAATTATGACAGTTGTCGGCCTCGGATCGCGGAAACTCATGTAGTCGGAATGATTGAACGGCTTCTCCTTGTTTCCATTTGTCCATTTCTGGAAATCCGGAAAAAATACTAGGTTTTGTGAAGTTTGATTTTTGGGTTCAAAGGCGCATGGACCCTCGAAAAATCGAATTTTATGGAACCAAGGCGTGTTTATACTTATTTTGAAGCTCATAACAAGCCAAACTCAAAAAACAATTCTTCAAAATTAACCTAAAATTAACCACGTTATGGCCTAAACCATTTTCAATGCCAAAATTCGAAATTTTTCATAACATGGGTTAGGGAAAAAAAACCAGGCCCGCAATTAATTAATATTTGAACTCGTCTTCTTCGGAAATCTCAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAAATTTCCACATTTCTGAT</pcr_primer_p1>
		<pcr_primer_p2>ATGGACAGTTTGTCCTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATGTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCAT</canonical_amplicon>
		<polymorphic_amplicon>AGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATGTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTTCAAWCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33627</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>208573</contig_pos>
        <strand>+</strand>
        <context>ACTGTCCATC[C/T]KCTTCAAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCATC</left_flank>
        <right_flank>GCTTCAAAGAAGGGAATTATGACAGTTGTCGGCCTCGGATCGCGGAAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGAAGGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATTGGCGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATGTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCATCCGCTTCAAAGAAGGGAATTATGACAGTTGTCGGCCTCGGATCGCGGAAACTCATGTAGTCGGAATGATTGAACGGCTTCTCCTTGTTTCCATTTGTCCATTTCTGGAAATCCGGAAAAAATACTAGGTTTTGTGAAGTTTGATTTTTGGGTTCAAAGGCGCATGGACCCTCGAAAAATCGAATTTTATGGAACCAAGGCGTGTTTATACTTATTTTGAAGCTCATAACAAGCCAAACTCAAAAAACAATTCTTCAAAATTAACCTAAAATTAACCACGTTATGGCCTAAACCATTTTCAATGCCAAAATTCGAAATTTTTCATAACATGGGTTAGGGAAAAAAAACCAGGCCCGCAATTAATTAATATTTGAACTCGTCTTCTTCGGAAATCTCAAGATATCTCTCCGAGTACTACGATCCTTCAACGAACGAATCGGTTGAGGAGTATTGGAAAAGAAAAAGATTCGAATACTGACTGTACTCACCAGCACTTTTCGTTT</canonical>
            <polymorphic>TGGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGAAGGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATTGGCGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATGTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCATCYGCTTCAAAGAAGGGAATTATGACAGTTGTCGGCCTCGGATCGCGGAAACTCATGTAGTCGGAATGATTGAACGGCTTCTCCTTGTTTCCATTTGTCCATTTCTGGAAATCCGGAAAAAATACTAGGTTTTGTGAAGTTTGATTTTTGGGTTCAAAGGCGCATGGACCCTCGAAAAATCGAATTTTATGGAACCAAGGCGTGTTTATACTTATTTTGAAGCTCATAACAAGCCAAACTCAAAAAACAATTCTTCAAAATTAACCTAAAATTAACCACGTTATGGCCTAAACCATTTTCAATGCCAAAATTCGAAATTTTTCATAACATGGGTTAGGGAAAAAAAACCAGGCCCGCAATTAATTAATATTTGAACTCGTCTTCTTCGGAAATCTCAAGATATCTCTCCGAGTACTACGATCCTTCAACGAACGAATCGGTTGAGGAGTATTGGAAAAGAAAAAGATTCGAATACTGACTGTACTCACCAGCACTTTTCGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>499 352 149</canonical_bands>
                <polymorphic_bands>851 149</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAGTCCTTCAGCCAATTCTT</pcr_primer_p1>
		<pcr_primer_p2>GATTTCCAGAAATGGACAAAT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCATCCGCTTCAAAGAAGGGAATTATGACAGTTGTCGGCCTCGGATCGCGGAAACTCATGTAGTCGGAATGATTGAACGGCTTCTCCTTGTTTCCATTTGTCCATTTCTGGAAATC</canonical_amplicon>
		<polymorphic_amplicon>AATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCATCYGCTTCAAAGAAGGGAATTATGACAGTTGTCGGCCTCGGATCGCGGAAACTCATGTAGTCGGAATGATTGAACGGCTTCTCCTTGTTTCCATTTGTCCATTTCTGGAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33628</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>208574</contig_pos>
        <strand>+</strand>
        <context>CTGTCCATCY[G/T]CTTCAAAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCATCC</left_flank>
        <right_flank>CTTCAAAGAAGGGAATTATGACAGTTGTCGGCCTCGGATCGCGGAAACTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGAAGGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATTGGCGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATGTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCATCCGCTTCAAAGAAGGGAATTATGACAGTTGTCGGCCTCGGATCGCGGAAACTCATGTAGTCGGAATGATTGAACGGCTTCTCCTTGTTTCCATTTGTCCATTTCTGGAAATCCGGAAAAAATACTAGGTTTTGTGAAGTTTGATTTTTGGGTTCAAAGGCGCATGGACCCTCGAAAAATCGAATTTTATGGAACCAAGGCGTGTTTATACTTATTTTGAAGCTCATAACAAGCCAAACTCAAAAAACAATTCTTCAAAATTAACCTAAAATTAACCACGTTATGGCCTAAACCATTTTCAATGCCAAAATTCGAAATTTTTCATAACATGGGTTAGGGAAAAAAAACCAGGCCCGCAATTAATTAATATTTGAACTCGTCTTCTTCGGAAATCTCAAGATATCTCTCCGAGTACTACGATCCTTCAACGAACGAATCGGTTGAGGAGTATTGGAAAAGAAAAAGATTCGAATACTGACTGTACTCACCAGCACTTTTCGTTTT</canonical>
            <polymorphic>GGTACTCTTTTTCAAATAACGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGAAGGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATTGGCGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATGTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCATCCKCTTCAAAGAAGGGAATTATGACAGTTGTCGGCCTCGGATCGCGGAAACTCATGTAGTCGGAATGATTGAACGGCTTCTCCTTGTTTCCATTTGTCCATTTCTGGAAATCCGGAAAAAATACTAGGTTTTGTGAAGTTTGATTTTTGGGTTCAAAGGCGCATGGACCCTCGAAAAATCGAATTTTATGGAACCAAGGCGTGTTTATACTTATTTTGAAGCTCATAACAAGCCAAACTCAAAAAACAATTCTTCAAAATTAACCTAAAATTAACCACGTTATGGCCTAAACCATTTTCAATGCCAAAATTCGAAATTTTTCATAACATGGGTTAGGGAAAAAAAACCAGGCCCGCAATTAATTAATATTTGAACTCGTCTTCTTCGGAAATCTCAAGATATCTCTCCGAGTACTACGATCCTTCAACGAACGAATCGGTTGAGGAGTATTGGAAAAGAAAAAGATTCGAATACTGACTGTACTCACCAGCACTTTTCGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>498 352 150</canonical_bands>
                <polymorphic_bands>850 150</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAGTCCTTCAGCCAATTCTT</pcr_primer_p1>
		<pcr_primer_p2>GATTTCCAGAAATGGACAAAT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCATCCGCTTCAAAGAAGGGAATTATGACAGTTGTCGGCCTCGGATCGCGGAAACTCATGTAGTCGGAATGATTGAACGGCTTCTCCTTGTTTCCATTTGTCCATTTCTGGAAATC</canonical_amplicon>
		<polymorphic_amplicon>AATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCATCCKCTTCAAAGAAGGGAATTATGACAGTTGTCGGCCTCGGATCGCGGAAACTCATGTAGTCGGAATGATTGAACGGCTTCTCCTTGTTTCCATTTGTCCATTTCTGGAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33629</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>208593</contig_pos>
        <strand>+</strand>
        <context>AAGGGAATTA[G/T]GACAGTTGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGACATCGCCAAGAGGACAAACTGTCCATCCGCTTCAAAGAAGGGAATTA</left_flank>
        <right_flank>GACAGTTGTCGGCCTCGGATCGCGGAAACTCATGTAGTCGGAATGATTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGAAGGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATTGGCGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATGTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCATCCGCTTCAAAGAAGGGAATTATGACAGTTGTCGGCCTCGGATCGCGGAAACTCATGTAGTCGGAATGATTGAACGGCTTCTCCTTGTTTCCATTTGTCCATTTCTGGAAATCCGGAAAAAATACTAGGTTTTGTGAAGTTTGATTTTTGGGTTCAAAGGCGCATGGACCCTCGAAAAATCGAATTTTATGGAACCAAGGCGTGTTTATACTTATTTTGAAGCTCATAACAAGCCAAACTCAAAAAACAATTCTTCAAAATTAACCTAAAATTAACCACGTTATGGCCTAAACCATTTTCAATGCCAAAATTCGAAATTTTTCATAACATGGGTTAGGGAAAAAAAACCAGGCCCGCAATTAATTAATATTTGAACTCGTCTTCTTCGGAAATCTCAAGATATCTCTCCGAGTACTACGATCCTTCAACGAACGAATCGGTTGAGGAGTATTGGAAAAGAAAAAGATTCGAATACTGACTGTACTCACCAGCACTTTTCGTTTTTTGGGCCGAACCGGCCGGG</canonical>
            <polymorphic>CGACGGGCACAGTTTGCTGGTTGGTTCAGGCTTGAGACTTGAGAAGATTGCTCACTTACGAGATTCGATATACGTCCGTTTCTTGGAGCATCTTCCATCTCAAGACTGAACTCTTCCAGATCTCTGGCCAATCGTCCTCTGATATTGGAGACAATTGTTGCGATCCCATCTTGAAGGTTGTCGAGGCGCTTTGGCCGGAACTTTTCGAAATTTTTGAAGAAAATTGGCGTTTCGAGAAAAATTTCCACATTTCTGATTCCAAGAGCGGCCGAATCCAACACAGATGACTGCTTTTGTATTTGGGTCGATTGGCAAAAATGGAAAAATGTTTTTTTTCTTCTTGAATCCAGGAATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCATCCGCTTCAAAGAAGGGAATTAKGACAGTTGTCGGCCTCGGATCGCGGAAACTCATGTAGTCGGAATGATTGAACGGCTTCTCCTTGTTTCCATTTGTCCATTTCTGGAAATCCGGAAAAAATACTAGGTTTTGTGAAGTTTGATTTTTGGGTTCAAAGGCGCATGGACCCTCGAAAAATCGAATTTTATGGAACCAAGGCGTGTTTATACTTATTTTGAAGCTCATAACAAGCCAAACTCAAAAAACAATTCTTCAAAATTAACCTAAAATTAACCACGTTATGGCCTAAACCATTTTCAATGCCAAAATTCGAAATTTTTCATAACATGGGTTAGGGAAAAAAAACCAGGCCCGCAATTAATTAATATTTGAACTCGTCTTCTTCGGAAATCTCAAGATATCTCTCCGAGTACTACGATCCTTCAACGAACGAATCGGTTGAGGAGTATTGGAAAAGAAAAAGATTCGAATACTGACTGTACTCACCAGCACTTTTCGTTTTTTGGGCCGAACCGGCCGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAGTCCTTCAGCCAATTCTT</pcr_primer_p1>
		<pcr_primer_p2>GATTTCCAGAAATGGACAAAT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCATCCGCTTCAAAGAAGGGAATTATGACAGTTGTCGGCCTCGGATCGCGGAAACTCATGTAGTCGGAATGATTGAACGGCTTCTCCTTGTTTCCATTTGTCCATTTCTGGAAATC</canonical_amplicon>
		<polymorphic_amplicon>AATAGTCCTTCAGCCAATTCTTCAATCTTCTTTGGTTCCAGCTTCTTCTTAATGAAGGACGAGTCGATTTGGGCTGTAATTACTCGTCCTTTCGATCTTGACATCGCCAAGAGGACAAACTGTCCATCCGCTTCAAAGAAGGGAATTAKGACAGTTGTCGGCCTCGGATCGCGGAAACTCATGTAGTCGGAATGATTGAACGGCTTCTCCTTGTTTCCATTTGTCCATTTCTGGAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33630</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>218012</contig_pos>
        <strand>+</strand>
        <context>CGAAACAGTR[A/T]SAGTTCTCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAGAGGCACAAGTGAAGGAAATCAAGAAACCAAAAATCCCGAAACAGTC</left_flank>
        <right_flank>AAGTTCTCGAAACAGTGGAAAGAGAAAGCCTGAAGAGAGAAAGCAAGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAGGATCCTACATTTCGGTTCATTTTCCATGATTTTATGGTGGAGATATCAAGGTTTGTGAATTTTGGATTTTAGGTCATAACTCGGCCAGTTTTTGTCCGAATTAACTGGCAATCCTTTATTAGTTTTGGTCAAAGCTGGGTTAATTTTGGTTAAATTCTTATTTGGGTTAATTTTTTGAGCTCGCCCTGTCTTCAGCTTCAAAATGAGTATAAACAAGACTAGTTTTCATGAATTTTGATTTTTGAGTTTAAAGAGATGTTTAAAGGCGCATGCACACTTGAAAAGTCGAATTTTCGGGAACCTAGTCTTGTTTATACTCGTTCTAAAGTTAAAGTCATAGTACATTTGATTTTCTATTTACTTTTCAGAACTCATATCCGCAAAATTCTTGTGAAATCGAGAGCTACATTGAAGGGCATTTCCAAAGATCCATGGATGGTGGGAGGAGAGGCACAAGTGAAGGAAATCAAGAAACCAAAAATCCCGAAACAGTCAAAGTTCTCGAAACAGTGGAAAGAGAAAGCCTGAAGAGAGAAAGCAAGAGAAAGAAGCTACCGAAAATGCAGAAGATTTACTCTATTCTATTCCAATGTTTTTTAATGACTAGAATGAATAAAAAATGAAAAATTAAAAAATTTTATGTTTTGGAAAAGTATGAATAAATCGAATATATTAGGTTGTTCGGAAAGTCCTTTCCACTTTTGATATGTTGTTTTCAAACTTCGTTTTCTTGAAGGGGATAAAAACGAGGAAGGAGTTTCTCGACCTTCAACGCCTCCTTCACCTTCTTCAGACAATTCGTACGGATCTTCTTTTGCTTTCTAATACAATCCTTCGAAGTCTCCCTTTTTTTCGGACAGCTCTCACCATCCATCGAATCAGTCAGGCTTCGGATATTTGCATTGTATTCTTCTTTTTTCTGTCGGAGCCTCCTAGCATTCTCCAACGCCTTCTCGTGTGCATTGTTGGCACTGAGGTGTTGTCGTCGATCTGAA</canonical>
            <polymorphic>GAGAGGATCCTACATTTCGGTTCATTTTCCATGATTTTATGGTGGAGATATCAAGGTTTGTGAATTTTGGATTTTAGGTCATAACTCGGCCAGTTTTTGTCCGAATTAACTGGCAATCCTTTATTAGTTTTGGTCAAAGCTGGGTTAATTTTGGTTAAATTCTTATTTGGGTTAATTTTTTGAGCTCGCCCTGTCTTCAGCTTCAAAATGAGTATAAACAAGACTAGTTTTCATGAATTTTGATTTTTGAGTTTAAAGAGATGTTTAAAGGCGCATGCACACTTGAAAAGTCGAATTTTCGGGAACCTAGTCTTGTTTATACTCGTTCTAAAGTTAAAGTCATAGTACATTTGATTTTCTATTTACTTTTCAGAACTCATATCCGCAAAATTCTTGTGAAATCGAGAGCTACATTGAAGGGCATTTCCAAAGATCCATGGATGGTGGGAGGAGAGGCACAAGTGAAGGAAATCAAGAAACCAAAAATCCCGAAACAGTCWAAGTTCTCGAAACAGTGGAAAGAGAAAGCCTGAAGAGAGAAAGCAAGAGAAAGAAGCTACCGAAAATGCAGAAGATTTACTCTATTCTATTCCAATGTTTTTTAATGACTAGAATGAATAAAAAATGAAAAATTAAAAAATTTTATGTTTTGGAAAAGTATGAATAAATCGAATATATTAGGTTGTTCGGAAAGTCCTTTCCACTTTTGATATGTTGTTTTCAAACTTCGTTTTCTTGAAGGGGATAAAAACGAGGAAGGAGTTTCTCGACCTTCAACGCCTCCTTCACCTTCTTCAGACAATTCGTACGGATCTTCTTTTGCTTTCTAATACAATCCTTCGAAGTCTCCCTTTTTTTCGGACAGCTCTCACCATCCATCGAATCAGTCAGGCTTCGGATATTTGCATTGTATTCTTCTTTTTTCTGTCGGAGCCTCCTAGCATTCTCCAACGCCTTCTCGTGTGCATTGTTGGCACTGAGGTGTTGTCGTCGATCTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTGATTTTCTATTTACTTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>GAATAGAGTAAATCTTCTGCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CATTTGATTTTCTATTTACTTTTCAGAACTCATATCCGCAAAATTCTTGTGAAATCGAGAGCTACATTGAAGGGCATTTCCAAAGATCCATGGATGGTGGGAGGAGAGGCACAAGTGAAGGAAATCAAGAAACCAAAAATCCCGAAACAGTCAAAGTTCTCGAAACAGTGGAAAGAGAAAGCCTGAAGAGAGAAAGCAAGAGAAAGAAGCTACCGAAAATGCAGAAGATTTACTCTATTC</canonical_amplicon>
		<polymorphic_amplicon>CATTTGATTTTCTATTTACTTTTCAGAACTCATATCCGCAAAATTCTTGTGAAATCGAGAGCTACATTGAAGGGCATTTCCAAAGATCCATGGATGGTGGGAGGAGAGGCACAAGTGAAGGAAATCAAGAAACCAAAAATCCCGAAACAGTCWAAGTTCTCGAAACAGTGGAAAGAGAAAGCCTGAAGAGAGAAAGCAAGAGAAAGAAGCTACCGAAAATGCAGAAGATTTACTCTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33631</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>218013</contig_pos>
        <strand>+</strand>
        <context>GAAACAGTRW[C/G]AGTTCTCGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAGAGGCACAAGTGAAGGAAATCAAGAAACCAAAAATCCCGAAACAGTCA</left_flank>
        <right_flank>AGTTCTCGAAACAGTGGAAAGAGAAAGCCTGAAGAGAGAAAGCAAGAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGGATCCTACATTTCGGTTCATTTTCCATGATTTTATGGTGGAGATATCAAGGTTTGTGAATTTTGGATTTTAGGTCATAACTCGGCCAGTTTTTGTCCGAATTAACTGGCAATCCTTTATTAGTTTTGGTCAAAGCTGGGTTAATTTTGGTTAAATTCTTATTTGGGTTAATTTTTTGAGCTCGCCCTGTCTTCAGCTTCAAAATGAGTATAAACAAGACTAGTTTTCATGAATTTTGATTTTTGAGTTTAAAGAGATGTTTAAAGGCGCATGCACACTTGAAAAGTCGAATTTTCGGGAACCTAGTCTTGTTTATACTCGTTCTAAAGTTAAAGTCATAGTACATTTGATTTTCTATTTACTTTTCAGAACTCATATCCGCAAAATTCTTGTGAAATCGAGAGCTACATTGAAGGGCATTTCCAAAGATCCATGGATGGTGGGAGGAGAGGCACAAGTGAAGGAAATCAAGAAACCAAAAATCCCGAAACAGTCAAAGTTCTCGAAACAGTGGAAAGAGAAAGCCTGAAGAGAGAAAGCAAGAGAAAGAAGCTACCGAAAATGCAGAAGATTTACTCTATTCTATTCCAATGTTTTTTAATGACTAGAATGAATAAAAAATGAAAAATTAAAAAATTTTATGTTTTGGAAAAGTATGAATAAATCGAATATATTAGGTTGTTCGGAAAGTCCTTTCCACTTTTGATATGTTGTTTTCAAACTTCGTTTTCTTGAAGGGGATAAAAACGAGGAAGGAGTTTCTCGACCTTCAACGCCTCCTTCACCTTCTTCAGACAATTCGTACGGATCTTCTTTTGCTTTCTAATACAATCCTTCGAAGTCTCCCTTTTTTTCGGACAGCTCTCACCATCCATCGAATCAGTCAGGCTTCGGATATTTGCATTGTATTCTTCTTTTTTCTGTCGGAGCCTCCTAGCATTCTCCAACGCCTTCTCGTGTGCATTGTTGGCACTGAGGTGTTGTCGTCGATCTGAAA</canonical>
            <polymorphic>AGAGGATCCTACATTTCGGTTCATTTTCCATGATTTTATGGTGGAGATATCAAGGTTTGTGAATTTTGGATTTTAGGTCATAACTCGGCCAGTTTTTGTCCGAATTAACTGGCAATCCTTTATTAGTTTTGGTCAAAGCTGGGTTAATTTTGGTTAAATTCTTATTTGGGTTAATTTTTTGAGCTCGCCCTGTCTTCAGCTTCAAAATGAGTATAAACAAGACTAGTTTTCATGAATTTTGATTTTTGAGTTTAAAGAGATGTTTAAAGGCGCATGCACACTTGAAAAGTCGAATTTTCGGGAACCTAGTCTTGTTTATACTCGTTCTAAAGTTAAAGTCATAGTACATTTGATTTTCTATTTACTTTTCAGAACTCATATCCGCAAAATTCTTGTGAAATCGAGAGCTACATTGAAGGGCATTTCCAAAGATCCATGGATGGTGGGAGGAGAGGCACAAGTGAAGGAAATCAAGAAACCAAAAATCCCGAAACAGTCASAGTTCTCGAAACAGTGGAAAGAGAAAGCCTGAAGAGAGAAAGCAAGAGAAAGAAGCTACCGAAAATGCAGAAGATTTACTCTATTCTATTCCAATGTTTTTTAATGACTAGAATGAATAAAAAATGAAAAATTAAAAAATTTTATGTTTTGGAAAAGTATGAATAAATCGAATATATTAGGTTGTTCGGAAAGTCCTTTCCACTTTTGATATGTTGTTTTCAAACTTCGTTTTCTTGAAGGGGATAAAAACGAGGAAGGAGTTTCTCGACCTTCAACGCCTCCTTCACCTTCTTCAGACAATTCGTACGGATCTTCTTTTGCTTTCTAATACAATCCTTCGAAGTCTCCCTTTTTTTCGGACAGCTCTCACCATCCATCGAATCAGTCAGGCTTCGGATATTTGCATTGTATTCTTCTTTTTTCTGTCGGAGCCTCCTAGCATTCTCCAACGCCTTCTCGTGTGCATTGTTGGCACTGAGGTGTTGTCGTCGATCTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTGATTTTCTATTTACTTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>GAATAGAGTAAATCTTCTGCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CATTTGATTTTCTATTTACTTTTCAGAACTCATATCCGCAAAATTCTTGTGAAATCGAGAGCTACATTGAAGGGCATTTCCAAAGATCCATGGATGGTGGGAGGAGAGGCACAAGTGAAGGAAATCAAGAAACCAAAAATCCCGAAACAGTCAAAGTTCTCGAAACAGTGGAAAGAGAAAGCCTGAAGAGAGAAAGCAAGAGAAAGAAGCTACCGAAAATGCAGAAGATTTACTCTATTC</canonical_amplicon>
		<polymorphic_amplicon>CATTTGATTTTCTATTTACTTTTCAGAACTCATATCCGCAAAATTCTTGTGAAATCGAGAGCTACATTGAAGGGCATTTCCAAAGATCCATGGATGGTGGGAGGAGAGGCACAAGTGAAGGAAATCAAGAAACCAAAAATCCCGAAACAGTCASAGTTCTCGAAACAGTGGAAAGAGAAAGCCTGAAGAGAGAAAGCAAGAGAAAGAAGCTACCGAAAATGCAGAAGATTTACTCTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33632</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>218177</contig_pos>
        <strand>+</strand>
        <context>AAAGTATGAA[C/T]AAATCGAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAATAAAAAATGAAAAATTAAAAAATTTTATGTTTTGGAAAAGTATGAA</left_flank>
        <right_flank>AAATCGAATATATTAGGTTGTTCGGAAAGTCCTTTCCACTTTTGATATGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGGTTAATTTTTTGAGCTCGCCCTGTCTTCAGCTTCAAAATGAGTATAAACAAGACTAGTTTTCATGAATTTTGATTTTTGAGTTTAAAGAGATGTTTAAAGGCGCATGCACACTTGAAAAGTCGAATTTTCGGGAACCTAGTCTTGTTTATACTCGTTCTAAAGTTAAAGTCATAGTACATTTGATTTTCTATTTACTTTTCAGAACTCATATCCGCAAAATTCTTGTGAAATCGAGAGCTACATTGAAGGGCATTTCCAAAGATCCATGGATGGTGGGAGGAGAGGCACAAGTGAAGGAAATCAAGAAACCAAAAATCCCGAAACAGTCAAAGTTCTCGAAACAGTGGAAAGAGAAAGCCTGAAGAGAGAAAGCAAGAGAAAGAAGCTACCGAAAATGCAGAAGATTTACTCTATTCTATTCCAATGTTTTTTAATGACTAGAATGAATAAAAAATGAAAAATTAAAAAATTTTATGTTTTGGAAAAGTATGAATAAATCGAATATATTAGGTTGTTCGGAAAGTCCTTTCCACTTTTGATATGTTGTTTTCAAACTTCGTTTTCTTGAAGGGGATAAAAACGAGGAAGGAGTTTCTCGACCTTCAACGCCTCCTTCACCTTCTTCAGACAATTCGTACGGATCTTCTTTTGCTTTCTAATACAATCCTTCGAAGTCTCCCTTTTTTTCGGACAGCTCTCACCATCCATCGAATCAGTCAGGCTTCGGATATTTGCATTGTATTCTTCTTTTTTCTGTCGGAGCCTCCTAGCATTCTCCAACGCCTTCTCGTGTGCATTGTTGGCACTGAGGTGTTGTCGTCGATCTGAAATCGGAATTATCTTATTGTTTTAACATTCTGGCGCATCGGATGAGTGAAACAAGACAAACTAACAAGGGGACCTTTTAAGTTGACCCTAAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTGTTGAATTTTTGAATTTTCTCGAATTTTCTCG</canonical>
            <polymorphic>TTTGGGTTAATTTTTTGAGCTCGCCCTGTCTTCAGCTTCAAAATGAGTATAAACAAGACTAGTTTTCATGAATTTTGATTTTTGAGTTTAAAGAGATGTTTAAAGGCGCATGCACACTTGAAAAGTCGAATTTTCGGGAACCTAGTCTTGTTTATACTCGTTCTAAAGTTAAAGTCATAGTACATTTGATTTTCTATTTACTTTTCAGAACTCATATCCGCAAAATTCTTGTGAAATCGAGAGCTACATTGAAGGGCATTTCCAAAGATCCATGGATGGTGGGAGGAGAGGCACAAGTGAAGGAAATCAAGAAACCAAAAATCCCGAAACAGTCAAAGTTCTCGAAACAGTGGAAAGAGAAAGCCTGAAGAGAGAAAGCAAGAGAAAGAAGCTACCGAAAATGCAGAAGATTTACTCTATTCTATTCCAATGTTTTTTAATGACTAGAATGAATAAAAAATGAAAAATTAAAAAATTTTATGTTTTGGAAAAGTATGAAYAAATCGAATATATTAGGTTGTTCGGAAAGTCCTTTCCACTTTTGATATGTTGTTTTCAAACTTCGTTTTCTTGAAGGGGATAAAAACGAGGAAGGAGTTTCTCGACCTTCAACGCCTCCTTCACCTTCTTCAGACAATTCGTACGGATCTTCTTTTGCTTTCTAATACAATCCTTCGAAGTCTCCCTTTTTTTCGGACAGCTCTCACCATCCATCGAATCAGTCAGGCTTCGGATATTTGCATTGTATTCTTCTTTTTTCTGTCGGAGCCTCCTAGCATTCTCCAACGCCTTCTCGTGTGCATTGTTGGCACTGAGGTGTTGTCGTCGATCTGAAATCGGAATTATCTTATTGTTTTAACATTCTGGCGCATCGGATGAGTGAAACAAGACAAACTAACAAGGGGACCTTTTAAGTTGACCCTAAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTGTTGAATTTTTGAATTTTCTCGAATTTTCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAAAATGCAGAAGATTTACTC</pcr_primer_p1>
		<pcr_primer_p2>GTACGAATTGTCTGAAGAAGGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGAAAATGCAGAAGATTTACTCTATTCTATTCCAATGTTTTTTAATGACTAGAATGAATAAAAAATGAAAAATTAAAAAATTTTATGTTTTGGAAAAGTATGAATAAATCGAATATATTAGGTTGTTCGGAAAGTCCTTTCCACTTTTGATATGTTGTTTTCAAACTTCGTTTTCTTGAAGGGGATAAAAACGAGGAAGGAGTTTCTCGACCTTCAACGCCTCCTTCACCTTCTTCAGACAATTCGTAC</canonical_amplicon>
		<polymorphic_amplicon>CGAAAATGCAGAAGATTTACTCTATTCTATTCCAATGTTTTTTAATGACTAGAATGAATAAAAAATGAAAAATTAAAAAATTTTATGTTTTGGAAAAGTATGAAYAAATCGAATATATTAGGTTGTTCGGAAAGTCCTTTCCACTTTTGATATGTTGTTTTCAAACTTCGTTTTCTTGAAGGGGATAAAAACGAGGAAGGAGTTTCTCGACCTTCAACGCCTCCTTCACCTTCTTCAGACAATTCGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33633</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>218226</contig_pos>
        <strand></strand>
        <context>cttttgatat[G/A]tygttttcaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATAAATCGAATATATTAGGTTGTTCGGAAAGTCCTTTCCACTTTTGATAT</left_flank>
        <right_flank>TTGTTTTCAAACTTCGTTTTCTTGAAGGGGATAAAAACGAGGAAGGAGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAACAAGACTAGTTTTCATGAATTTTGATTTTTGAGTTTAAAGAGATGTTTAAAGGCGCATGCACACTTGAAAAGTCGAATTTTCGGGAACCTAGTCTTGTTTATACTCGTTCTAAAGTTAAAGTCATAGTACATTTGATTTTCTATTTACTTTTCAGAACTCATATCCGCAAAATTCTTGTGAAATCGAGAGCTACATTGAAGGGCATTTCCAAAGATCCATGGATGGTGGGAGGAGAGGCACAAGTGAAGGAAATCAAGAAACCAAAAATCCCGAAACAGTCAAAGTTCTCGAAACAGTGGAAAGAGAAAGCCTGAAGAGAGAAAGCAAGAGAAAGAAGCTACCGAAAATGCAGAAGATTTACTCTATTCTATTCCAATGTTTTTTAATGACTAGAATGAATAAAAAATGAAAAATTAAAAAATTTTATGTTTTGGAAAAGTATGAATAAATCGAATATATTAGGTTGTTCGGAAAGTCCTTTCCACTTTTGATATGTTGTTTTCAAACTTCGTTTTCTTGAAGGGGATAAAAACGAGGAAGGAGTTTCTCGACCTTCAACGCCTCCTTCACCTTCTTCAGACAATTCGTACGGATCTTCTTTTGCTTTCTAATACAATCCTTCGAAGTCTCCCTTTTTTTCGGACAGCTCTCACCATCCATCGAATCAGTCAGGCTTCGGATATTTGCATTGTATTCTTCTTTTTTCTGTCGGAGCCTCCTAGCATTCTCCAACGCCTTCTCGTGTGCATTGTTGGCACTGAGGTGTTGTCGTCGATCTGAAATCGGAATTATCTTATTGTTTTAACATTCTGGCGCATCGGATGAGTGAAACAAGACAAACTAACAAGGGGACCTTTTAAGTTGACCCTAAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTGTTGAATTTTTGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTC</canonical>
            <polymorphic>TAAACAAGACTAGTTTTCATGAATTTTGATTTTTGAGTTTAAAGAGATGTTTAAAGGCGCATGCACACTTGAAAAGTCGAATTTTCGGGAACCTAGTCTTGTTTATACTCGTTCTAAAGTTAAAGTCATAGTACATTTGATTTTCTATTTACTTTTCAGAACTCATATCCGCAAAATTCTTGTGAAATCGAGAGCTACATTGAAGGGCATTTCCAAAGATCCATGGATGGTGGGAGGAGAGGCACAAGTGAAGGAAATCAAGAAACCAAAAATCCCGAAACAGTCAAAGTTCTCGAAACAGTGGAAAGAGAAAGCCTGAAGAGAGAAAGCAAGAGAAAGAAGCTACCGAAAATGCAGAAGATTTACTCTATTCTATTCCAATGTTTTTTAATGACTAGAATGAATAAAAAATGAAAAATTAAAAAATTTTATGTTTTGGAAAAGTATGAATAAATCGAATATATTAGGTTGTTCGGAAAGTCCTTTCCACTTTTGATATRTTGTTTTCAAACTTCGTTTTCTTGAAGGGGATAAAAACGAGGAAGGAGTTTCTCGACCTTCAACGCCTCCTTCACCTTCTTCAGACAATTCGTACGGATCTTCTTTTGCTTTCTAATACAATCCTTCGAAGTCTCCCTTTTTTTCGGACAGCTCTCACCATCCATCGAATCAGTCAGGCTTCGGATATTTGCATTGTATTCTTCTTTTTTCTGTCGGAGCCTCCTAGCATTCTCCAACGCCTTCTCGTGTGCATTGTTGGCACTGAGGTGTTGTCGTCGATCTGAAATCGGAATTATCTTATTGTTTTAACATTCTGGCGCATCGGATGAGTGAAACAAGACAAACTAACAAGGGGACCTTTTAAGTTGACCCTAAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTGTTGAATTTTTGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAAAATGCAGAAGATTTACTC</pcr_primer_p1>
		<pcr_primer_p2>GTACGAATTGTCTGAAGAAGGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGAAAATGCAGAAGATTTACTCTATTCTATTCCAATGTTTTTTAATGACTAGAATGAATAAAAAATGAAAAATTAAAAAATTTTATGTTTTGGAAAAGTATGAATAAATCGAATATATTAGGTTGTTCGGAAAGTCCTTTCCACTTTTGATATGTTGTTTTCAAACTTCGTTTTCTTGAAGGGGATAAAAACGAGGAAGGAGTTTCTCGACCTTCAACGCCTCCTTCACCTTCTTCAGACAATTCGTAC</canonical_amplicon>
		<polymorphic_amplicon>CGAAAATGCAGAAGATTTACTCTATTCTATTCCAATGTTTTTTAATGACTAGAATGAATAAAAAATGAAAAATTAAAAAATTTTATGTTTTGGAAAAGTATGAATAAATCGAATATATTAGGTTGTTCGGAAAGTCCTTTCCACTTTTGATATRTTGTTTTCAAACTTCGTTTTCTTGAAGGGGATAAAAACGAGGAAGGAGTTTCTCGACCTTCAACGCCTCCTTCACCTTCTTCAGACAATTCGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33634</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>218228</contig_pos>
        <strand></strand>
        <context>tttgatatrt[T/C]gttttcaaac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAATCGAATATATTAGGTTGTTCGGAAAGTCCTTTCCACTTTTGATATGT</left_flank>
        <right_flank>GTTTTCAAACTTCGTTTTCTTGAAGGGGATAAAAACGAGGAAGGAGTTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAAGACTAGTTTTCATGAATTTTGATTTTTGAGTTTAAAGAGATGTTTAAAGGCGCATGCACACTTGAAAAGTCGAATTTTCGGGAACCTAGTCTTGTTTATACTCGTTCTAAAGTTAAAGTCATAGTACATTTGATTTTCTATTTACTTTTCAGAACTCATATCCGCAAAATTCTTGTGAAATCGAGAGCTACATTGAAGGGCATTTCCAAAGATCCATGGATGGTGGGAGGAGAGGCACAAGTGAAGGAAATCAAGAAACCAAAAATCCCGAAACAGTCAAAGTTCTCGAAACAGTGGAAAGAGAAAGCCTGAAGAGAGAAAGCAAGAGAAAGAAGCTACCGAAAATGCAGAAGATTTACTCTATTCTATTCCAATGTTTTTTAATGACTAGAATGAATAAAAAATGAAAAATTAAAAAATTTTATGTTTTGGAAAAGTATGAATAAATCGAATATATTAGGTTGTTCGGAAAGTCCTTTCCACTTTTGATATGTTGTTTTCAAACTTCGTTTTCTTGAAGGGGATAAAAACGAGGAAGGAGTTTCTCGACCTTCAACGCCTCCTTCACCTTCTTCAGACAATTCGTACGGATCTTCTTTTGCTTTCTAATACAATCCTTCGAAGTCTCCCTTTTTTTCGGACAGCTCTCACCATCCATCGAATCAGTCAGGCTTCGGATATTTGCATTGTATTCTTCTTTTTTCTGTCGGAGCCTCCTAGCATTCTCCAACGCCTTCTCGTGTGCATTGTTGGCACTGAGGTGTTGTCGTCGATCTGAAATCGGAATTATCTTATTGTTTTAACATTCTGGCGCATCGGATGAGTGAAACAAGACAAACTAACAAGGGGACCTTTTAAGTTGACCCTAAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTGTTGAATTTTTGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGA</canonical>
            <polymorphic>AACAAGACTAGTTTTCATGAATTTTGATTTTTGAGTTTAAAGAGATGTTTAAAGGCGCATGCACACTTGAAAAGTCGAATTTTCGGGAACCTAGTCTTGTTTATACTCGTTCTAAAGTTAAAGTCATAGTACATTTGATTTTCTATTTACTTTTCAGAACTCATATCCGCAAAATTCTTGTGAAATCGAGAGCTACATTGAAGGGCATTTCCAAAGATCCATGGATGGTGGGAGGAGAGGCACAAGTGAAGGAAATCAAGAAACCAAAAATCCCGAAACAGTCAAAGTTCTCGAAACAGTGGAAAGAGAAAGCCTGAAGAGAGAAAGCAAGAGAAAGAAGCTACCGAAAATGCAGAAGATTTACTCTATTCTATTCCAATGTTTTTTAATGACTAGAATGAATAAAAAATGAAAAATTAAAAAATTTTATGTTTTGGAAAAGTATGAATAAATCGAATATATTAGGTTGTTCGGAAAGTCCTTTCCACTTTTGATATGTYGTTTTCAAACTTCGTTTTCTTGAAGGGGATAAAAACGAGGAAGGAGTTTCTCGACCTTCAACGCCTCCTTCACCTTCTTCAGACAATTCGTACGGATCTTCTTTTGCTTTCTAATACAATCCTTCGAAGTCTCCCTTTTTTTCGGACAGCTCTCACCATCCATCGAATCAGTCAGGCTTCGGATATTTGCATTGTATTCTTCTTTTTTCTGTCGGAGCCTCCTAGCATTCTCCAACGCCTTCTCGTGTGCATTGTTGGCACTGAGGTGTTGTCGTCGATCTGAAATCGGAATTATCTTATTGTTTTAACATTCTGGCGCATCGGATGAGTGAAACAAGACAAACTAACAAGGGGACCTTTTAAGTTGACCCTAAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTGTTGAATTTTTGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAAAATGCAGAAGATTTACTC</pcr_primer_p1>
		<pcr_primer_p2>GTACGAATTGTCTGAAGAAGGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGAAAATGCAGAAGATTTACTCTATTCTATTCCAATGTTTTTTAATGACTAGAATGAATAAAAAATGAAAAATTAAAAAATTTTATGTTTTGGAAAAGTATGAATAAATCGAATATATTAGGTTGTTCGGAAAGTCCTTTCCACTTTTGATATGTTGTTTTCAAACTTCGTTTTCTTGAAGGGGATAAAAACGAGGAAGGAGTTTCTCGACCTTCAACGCCTCCTTCACCTTCTTCAGACAATTCGTAC</canonical_amplicon>
		<polymorphic_amplicon>CGAAAATGCAGAAGATTTACTCTATTCTATTCCAATGTTTTTTAATGACTAGAATGAATAAAAAATGAAAAATTAAAAAATTTTATGTTTTGGAAAAGTATGAATAAATCGAATATATTAGGTTGTTCGGAAAGTCCTTTCCACTTTTGATATGTYGTTTTCAAACTTCGTTTTCTTGAAGGGGATAAAAACGAGGAAGGAGTTTCTCGACCTTCAACGCCTCCTTCACCTTCTTCAGACAATTCGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33635</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>218493</contig_pos>
        <strand>+</strand>
        <context>KTGGCACTGA[A/G]GTGTTGTCGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGCCTCCTAGCATTCTCCAACGCCTTCTCGTGTGCATTGTTGGCACTGA</left_flank>
        <right_flank>GTGTTGTCGTCGATCTGAAATCGGAATTATCTTATTGTTTTAACATTCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATCCCGAAACAGTCAAAGTTCTCGAAACAGTGGAAAGAGAAAGCCTGAAGAGAGAAAGCAAGAGAAAGAAGCTACCGAAAATGCAGAAGATTTACTCTATTCTATTCCAATGTTTTTTAATGACTAGAATGAATAAAAAATGAAAAATTAAAAAATTTTATGTTTTGGAAAAGTATGAATAAATCGAATATATTAGGTTGTTCGGAAAGTCCTTTCCACTTTTGATATGTTGTTTTCAAACTTCGTTTTCTTGAAGGGGATAAAAACGAGGAAGGAGTTTCTCGACCTTCAACGCCTCCTTCACCTTCTTCAGACAATTCGTACGGATCTTCTTTTGCTTTCTAATACAATCCTTCGAAGTCTCCCTTTTTTTCGGACAGCTCTCACCATCCATCGAATCAGTCAGGCTTCGGATATTTGCATTGTATTCTTCTTTTTTCTGTCGGAGCCTCCTAGCATTCTCCAACGCCTTCTCGTGTGCATTGTTGGCACTGAGGTGTTGTCGTCGATCTGAAATCGGAATTATCTTATTGTTTTAACATTCTGGCGCATCGGATGAGTGAAACAAGACAAACTAACAAGGGGACCTTTTAAGTTGACCCTAAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTGTTGAATTTTTGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTAATTTTCGGAATTTTCTTGAATTTTCGGAATTTTCTCGAATTAATTTTCGGAATTTTCTCGAATTTTCTCGAATTTTCGGAATTTTCTGAACTTTTGGATTTTCTGAACTTTTCTGGATTTTTAGTATTTTCTGAACTTTTCTGGATTTTCTGGAATTTCCCATTTTTCTCGAAATTTTGAATTTTCTCGAATTTTCGGAATTTTTGAATTTTCTGGAATTTTCCAATTTTCTCGGGTAAAATTGATAGATTTTCATGAATT</canonical>
            <polymorphic>AAAAATCCCGAAACAGTCAAAGTTCTCGAAACAGTGGAAAGAGAAAGCCTGAAGAGAGAAAGCAAGAGAAAGAAGCTACCGAAAATGCAGAAGATTTACTCTATTCTATTCCAATGTTTTTTAATGACTAGAATGAATAAAAAATGAAAAATTAAAAAATTTTATGTTTTGGAAAAGTATGAATAAATCGAATATATTAGGTTGTTCGGAAAGTCCTTTCCACTTTTGATATGTTGTTTTCAAACTTCGTTTTCTTGAAGGGGATAAAAACGAGGAAGGAGTTTCTCGACCTTCAACGCCTCCTTCACCTTCTTCAGACAATTCGTACGGATCTTCTTTTGCTTTCTAATACAATCCTTCGAAGTCTCCCTTTTTTTCGGACAGCTCTCACCATCCATCGAATCAGTCAGGCTTCGGATATTTGCATTGTATTCTTCTTTTTTCTGTCGGAGCCTCCTAGCATTCTCCAACGCCTTCTCGTGTGCATTGTTGGCACTGARGTGTTGTCGTCGATCTGAAATCGGAATTATCTTATTGTTTTAACATTCTGGCGCATCGGATGAGTGAAACAAGACAAACTAACAAGGGGACCTTTTAAGTTGACCCTAAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTTTTGAATTGTTGAATTTTTGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTTTCTCGAATTAATTTTCGGAATTTTCTTGAATTTTCGGAATTTTCTCGAATTAATTTTCGGAATTTTCTCGAATTTTCTCGAATTTTCGGAATTTTCTGAACTTTTGGATTTTCTGAACTTTTCTGGATTTTTAGTATTTTCTGAACTTTTCTGGATTTTCTGGAATTTCCCATTTTTCTCGAAATTTTGAATTTTCTCGAATTTTCGGAATTTTTGAATTTTCTGGAATTTTCCAATTTTCTCGGGTAAAATTGATAGATTTTCATGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTGCTTTCTAATACAATCCT</pcr_primer_p1>
		<pcr_primer_p2>TTAGTTTGTCTTGTTTCACTCATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTGCTTTCTAATACAATCCTTCGAAGTCTCCCTTTTTTTCGGACAGCTCTCACCATCCATCGAATCAGTCAGGCTTCGGATATTTGCATTGTATTCTTCTTTTTTCTGTCGGAGCCTCCTAGCATTCTCCAACGCCTTCTCGTGTGCATTGTTGGCACTGAGGTGTTGTCGTCGATCTGAAATCGGAATTATCTTATTGTTTTAACATTCTGGCGCATCGGATGAGTGAAACAAGACAAACTAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTGCTTTCTAATACAATCCTTCGAAGTCTCCCTTTTTTTCGGACAGCTCTCACCATCCATCGAATCAGTCAGGCTTCGGATATTTGCATTGTATTCTTCTTTTTTCTGTCGGAGCCTCCTAGCATTCTCCAACGCCTTCTCGTGTGCATTGTTGGCACTGARGTGTTGTCGTCGATCTGAAATCGGAATTATCTTATTGTTTTAACATTCTGGCGCATCGGATGAGTGAAACAAGACAAACTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33636</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>220787</contig_pos>
        <strand></strand>
        <context>CTCACCAATT[A/C]TCCCCGAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCCAACATGATTGAAAGTTGGCCATTTTCCAACAATTTTCCTCACCAATT</left_flank>
        <right_flank>TCCCCGAAATTTATACAATTTTTTCAGGAAAAAAAAATTACACTGTTTCA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCTTCAAGGGGGTCAAGTTGGAACAGAATAGAATATTCTAGAGATCAGAATAGAAGTAGCGAATTTTCAGAAAAAATCAATAGGAATAGAATGAATACTAAAGTTAGGCACCTGGGGGTATTTATAGGGAGGGGGCGGAGTCAAATGCAGTTGGCCAGGTGCCAGGTGGTGTCAGGGAGACAGGTGTGACATTTTGGGGGTGATTAGGGTAATAAAAAGTTTTGAAGGAGTACTTGAAAGGTATTTAAGAGGTGCTGACACCATCTTTATGACAGTAATTTTGTGATTACTGTAGTTTTTCCCAGGAGAAATGTGGAGAAATGTGTTCAGATCCATTGGAGGTTATAGTGTGTTTTTAAAAAAATTTCAGCATAGTTTTCAGACTCTAAAAATGAACGAAAATCGATTTTTGAACCGGTTTTTGAAGCCAAACGTCGTTCAAATCGGCCCAACATGATTGAAAGTTGGCCATTTTCCAACAATTTTCCTCACCAATTATCCCCGAAATTTATACAATTTTTTCAGGAAAAAAAAATTACACTGTTTCAATGTTTACAATTTTTCTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCGATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAAATTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCAATTTTTCTAGAAAAGGTTGAAATCTGGGCAAATCCGATACTTTTGCAATCTGCGCTTTTGCAGAAGAGCTCTTCGTGACCTACACTCCGAAGTTAAGATCAATCAAAAATATCGATTTTCAACAAATCTATATTCC</canonical>
            <polymorphic>AGTCTTCAAGGGGGTCAAGTTGGAACAGAATAGAATATTCTAGAGATCAGAATAGAAGTAGCGAATTTTCAGAAAAAATCAATAGGAATAGAATGAATACTAAAGTTAGGCACCTGGGGGTATTTATAGGGAGGGGGCGGAGTCAAATGCAGTTGGCCAGGTGCCAGGTGGTGTCAGGGAGACAGGTGTGACATTTTGGGGGTGATTAGGGTAATAAAAAGTTTTGAAGGAGTACTTGAAAGGTATTTAAGAGGTGCTGACACCATCTTTATGACAGTAATTTTGTGATTACTGTAGTTTTTCCCAGGAGAAATGTGGAGAAATGTGTTCAGATCCATTGGAGGTTATAGTGTGTTTTTAAAAAAATTTCAGCATAGTTTTCAGACTCTAAAAATGAACGAAAATCGATTTTTGAACCGGTTTTTGAAGCCAAACGTCGTTCAAATCGGCCCAACATGATTGAAAGTTGGCCATTTTCCAACAATTTTCCTCACCAATTMTCCCCGAAATTTATACAATTTTTTCAGGAAAAAAAAATTACACTGTTTCAATGTTTACAATTTTTCTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCGATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAAATTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCAATTTTTCTAGAAAAGGTTGAAATCTGGGCAAATCCGATACTTTTGCAATCTGCGCTTTTGCAGAAGAGCTCTTCGTGACCTACACTCCGAAGTTAAGATCAATCAAAAATATCGATTTTCAACAAATCTATATTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATCCATTGGAGGTTATAGTGT</pcr_primer_p1>
		<pcr_primer_p2>ATAGCTTGGTCAGAAAAATTGTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGATCCATTGGAGGTTATAGTGTGTTTTTAAAAAAATTTCAGCATAGTTTTCAGACTCTAAAAATGAACGAAAATCGATTTTTGAACCGGTTTTTGAAGCCAAACGTCGTTCAAATCGGCCCAACATGATTGAAAGTTGGCCATTTTCCAACAATTTTCCTCACCAATTATCCCCGAAATTTATACAATTTTTTCAGGAAAAAAAAATTACACTGTTTCAATGTTTACAATTTTTCTGACCAAGCTAT</canonical_amplicon>
		<polymorphic_amplicon>AGATCCATTGGAGGTTATAGTGTGTTTTTAAAAAAATTTCAGCATAGTTTTCAGACTCTAAAAATGAACGAAAATCGATTTTTGAACCGGTTTTTGAAGCCAAACGTCGTTCAAATCGGCCCAACATGATTGAAAGTTGGCCATTTTCCAACAATTTTCCTCACCAATTMTCCCCGAAATTTATACAATTTTTTCAGGAAAAAAAAATTACACTGTTTCAATGTTTACAATTTTTCTGACCAAGCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33637</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>220970</contig_pos>
        <strand></strand>
        <context>atttagaaaa[A/G]ttgtcaactg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAA</left_flank>
        <right_flank>TTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGTGTGACATTTTGGGGGTGATTAGGGTAATAAAAAGTTTTGAAGGAGTACTTGAAAGGTATTTAAGAGGTGCTGACACCATCTTTATGACAGTAATTTTGTGATTACTGTAGTTTTTCCCAGGAGAAATGTGGAGAAATGTGTTCAGATCCATTGGAGGTTATAGTGTGTTTTTAAAAAAATTTCAGCATAGTTTTCAGACTCTAAAAATGAACGAAAATCGATTTTTGAACCGGTTTTTGAAGCCAAACGTCGTTCAAATCGGCCCAACATGATTGAAAGTTGGCCATTTTCCAACAATTTTCCTCACCAATTATCCCCGAAATTTATACAATTTTTTCAGGAAAAAAAAATTACACTGTTTCAATGTTTACAATTTTTCTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCGATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAAATTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCAATTTTTCTAGAAAAGGTTGAAATCTGGGCAAATCCGATACTTTTGCAATCTGCGCTTTTGCAGAAGAGCTCTTCGTGACCTACACTCCGAAGTTAAGATCAATCAAAAATATCGATTTTCAACAAATCTATATTCCCCTTGCTGTCGACCGCTACGCCGACACGCGACGCTCCCAAACTAAGCTCGATGCCAAATTTCGAATTCCCACAATCAAGCACCCTTCAAAAAGCTCTTATTATTTCCAATAATCCATGTGAAAACGTGCATTTCTGCTGGGAAAAACTACAGTAATCACCAGATTAATGTCATAAAAATGGTA</canonical>
            <polymorphic>AGGTGTGACATTTTGGGGGTGATTAGGGTAATAAAAAGTTTTGAAGGAGTACTTGAAAGGTATTTAAGAGGTGCTGACACCATCTTTATGACAGTAATTTTGTGATTACTGTAGTTTTTCCCAGGAGAAATGTGGAGAAATGTGTTCAGATCCATTGGAGGTTATAGTGTGTTTTTAAAAAAATTTCAGCATAGTTTTCAGACTCTAAAAATGAACGAAAATCGATTTTTGAACCGGTTTTTGAAGCCAAACGTCGTTCAAATCGGCCCAACATGATTGAAAGTTGGCCATTTTCCAACAATTTTCCTCACCAATTATCCCCGAAATTTATACAATTTTTTCAGGAAAAAAAAATTACACTGTTTCAATGTTTACAATTTTTCTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCGATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAARTTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCAATTTTTCTAGAAAAGGTTGAAATCTGGGCAAATCCGATACTTTTGCAATCTGCGCTTTTGCAGAAGAGCTCTTCGTGACCTACACTCCGAAGTTAAGATCAATCAAAAATATCGATTTTCAACAAATCTATATTCCCCTTGCTGTCGACCGCTACGCCGACACGCGACGCTCCCAAACTAAGCTCGATGCCAAATTTCGAATTCCCACAATCAAGCACCCTTCAAAAAGCTCTTATTATTTCCAATAATCCATGTGAAAACGTGCATTTCTGCTGGGAAAAACTACAGTAATCACCAGATTAATGTCATAAAAATGGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>193 120 118 95 86 72 45 35 35 34 33 25 23 19 15 13 12 11 9 7</canonical_bands>
                <polymorphic_bands>193 120 118 95 86 72 48 45 35 35 34 25 23 19 13 12 11 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGACCAAGCTATTCCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAAAATTGCTCATTGAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>306</pcr_amplicon_size>
		<canonical_amplicon>CTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCGATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAAATTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCAATTTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCGATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAARTTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCAATTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33638</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>221037</contig_pos>
        <strand></strand>
        <context>tttttgatat[T/C]ttgcattgga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATAT</left_flank>
        <right_flank>TTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTCGACAAAAATAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGTGCTGACACCATCTTTATGACAGTAATTTTGTGATTACTGTAGTTTTTCCCAGGAGAAATGTGGAGAAATGTGTTCAGATCCATTGGAGGTTATAGTGTGTTTTTAAAAAAATTTCAGCATAGTTTTCAGACTCTAAAAATGAACGAAAATCGATTTTTGAACCGGTTTTTGAAGCCAAACGTCGTTCAAATCGGCCCAACATGATTGAAAGTTGGCCATTTTCCAACAATTTTCCTCACCAATTATCCCCGAAATTTATACAATTTTTTCAGGAAAAAAAAATTACACTGTTTCAATGTTTACAATTTTTCTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCGATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAAATTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCAATTTTTCTAGAAAAGGTTGAAATCTGGGCAAATCCGATACTTTTGCAATCTGCGCTTTTGCAGAAGAGCTCTTCGTGACCTACACTCCGAAGTTAAGATCAATCAAAAATATCGATTTTCAACAAATCTATATTCCCCTTGCTGTCGACCGCTACGCCGACACGCGACGCTCCCAAACTAAGCTCGATGCCAAATTTCGAATTCCCACAATCAAGCACCCTTCAAAAAGCTCTTATTATTTCCAATAATCCATGTGAAAACGTGCATTTCTGCTGGGAAAAACTACAGTAATCACCAGATTAATGTCATAAAAATGGTAAGAAAAGGGGAGAAATGCCACTTTTTAAGTACCCTCTCCAAACTTTTTATTACCCTAATTACCCCCC</canonical>
            <polymorphic>GAGGTGCTGACACCATCTTTATGACAGTAATTTTGTGATTACTGTAGTTTTTCCCAGGAGAAATGTGGAGAAATGTGTTCAGATCCATTGGAGGTTATAGTGTGTTTTTAAAAAAATTTCAGCATAGTTTTCAGACTCTAAAAATGAACGAAAATCGATTTTTGAACCGGTTTTTGAAGCCAAACGTCGTTCAAATCGGCCCAACATGATTGAAAGTTGGCCATTTTCCAACAATTTTCCTCACCAATTATCCCCGAAATTTATACAATTTTTTCAGGAAAAAAAAATTACACTGTTTCAATGTTTACAATTTTTCTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCGATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAAATTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATYTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCAATTTTTCTAGAAAAGGTTGAAATCTGGGCAAATCCGATACTTTTGCAATCTGCGCTTTTGCAGAAGAGCTCTTCGTGACCTACACTCCGAAGTTAAGATCAATCAAAAATATCGATTTTCAACAAATCTATATTCCCCTTGCTGTCGACCGCTACGCCGACACGCGACGCTCCCAAACTAAGCTCGATGCCAAATTTCGAATTCCCACAATCAAGCACCCTTCAAAAAGCTCTTATTATTTCCAATAATCCATGTGAAAACGTGCATTTCTGCTGGGAAAAACTACAGTAATCACCAGATTAATGTCATAAAAATGGTAAGAAAAGGGGAGAAATGCCACTTTTTAAGTACCCTCTCCAAACTTTTTATTACCCTAATTACCCCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGACCAAGCTATTCCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAAAATTGCTCATTGAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>306</pcr_amplicon_size>
		<canonical_amplicon>CTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCGATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAAATTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCAATTTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCGATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAAATTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATYTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCAATTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33639</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>221052</contig_pos>
        <strand></strand>
        <context>attggagtta[A/G]gataattgag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTA</left_flank>
        <right_flank>GATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATATG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTTATGACAGTAATTTTGTGATTACTGTAGTTTTTCCCAGGAGAAATGTGGAGAAATGTGTTCAGATCCATTGGAGGTTATAGTGTGTTTTTAAAAAAATTTCAGCATAGTTTTCAGACTCTAAAAATGAACGAAAATCGATTTTTGAACCGGTTTTTGAAGCCAAACGTCGTTCAAATCGGCCCAACATGATTGAAAGTTGGCCATTTTCCAACAATTTTCCTCACCAATTATCCCCGAAATTTATACAATTTTTTCAGGAAAAAAAAATTACACTGTTTCAATGTTTACAATTTTTCTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCGATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAAATTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCAATTTTTCTAGAAAAGGTTGAAATCTGGGCAAATCCGATACTTTTGCAATCTGCGCTTTTGCAGAAGAGCTCTTCGTGACCTACACTCCGAAGTTAAGATCAATCAAAAATATCGATTTTCAACAAATCTATATTCCCCTTGCTGTCGACCGCTACGCCGACACGCGACGCTCCCAAACTAAGCTCGATGCCAAATTTCGAATTCCCACAATCAAGCACCCTTCAAAAAGCTCTTATTATTTCCAATAATCCATGTGAAAACGTGCATTTCTGCTGGGAAAAACTACAGTAATCACCAGATTAATGTCATAAAAATGGTAAGAAAAGGGGAGAAATGCCACTTTTTAAGTACCCTCTCCAAACTTTTTATTACCCTAATTACCCCCCATTATGTCACACCTG</canonical>
            <polymorphic>TCTTTATGACAGTAATTTTGTGATTACTGTAGTTTTTCCCAGGAGAAATGTGGAGAAATGTGTTCAGATCCATTGGAGGTTATAGTGTGTTTTTAAAAAAATTTCAGCATAGTTTTCAGACTCTAAAAATGAACGAAAATCGATTTTTGAACCGGTTTTTGAAGCCAAACGTCGTTCAAATCGGCCCAACATGATTGAAAGTTGGCCATTTTCCAACAATTTTCCTCACCAATTATCCCCGAAATTTATACAATTTTTTCAGGAAAAAAAAATTACACTGTTTCAATGTTTACAATTTTTCTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCGATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAAATTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTARGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCAATTTTTCTAGAAAAGGTTGAAATCTGGGCAAATCCGATACTTTTGCAATCTGCGCTTTTGCAGAAGAGCTCTTCGTGACCTACACTCCGAAGTTAAGATCAATCAAAAATATCGATTTTCAACAAATCTATATTCCCCTTGCTGTCGACCGCTACGCCGACACGCGACGCTCCCAAACTAAGCTCGATGCCAAATTTCGAATTCCCACAATCAAGCACCCTTCAAAAAGCTCTTATTATTTCCAATAATCCATGTGAAAACGTGCATTTCTGCTGGGAAAAACTACAGTAATCACCAGATTAATGTCATAAAAATGGTAAGAAAAGGGGAGAAATGCCACTTTTTAAGTACCCTCTCCAAACTTTTTATTACCCTAATTACCCCCCATTATGTCACACCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>404 207 195 93 57 44</canonical_bands>
                <polymorphic_bands>599 207 93 57 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGACCAAGCTATTCCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAAAATTGCTCATTGAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>306</pcr_amplicon_size>
		<canonical_amplicon>CTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCGATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAAATTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCAATTTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCGATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAAATTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTARGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCAATTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33640</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>221076</contig_pos>
        <strand></strand>
        <context>aaacttgacT[C/T]GACAAAAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTTGATATTTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACT</left_flank>
        <right_flank>GACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTGTAGTTTTTCCCAGGAGAAATGTGGAGAAATGTGTTCAGATCCATTGGAGGTTATAGTGTGTTTTTAAAAAAATTTCAGCATAGTTTTCAGACTCTAAAAATGAACGAAAATCGATTTTTGAACCGGTTTTTGAAGCCAAACGTCGTTCAAATCGGCCCAACATGATTGAAAGTTGGCCATTTTCCAACAATTTTCCTCACCAATTATCCCCGAAATTTATACAATTTTTTCAGGAAAAAAAAATTACACTGTTTCAATGTTTACAATTTTTCTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCGATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAAATTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCAATTTTTCTAGAAAAGGTTGAAATCTGGGCAAATCCGATACTTTTGCAATCTGCGCTTTTGCAGAAGAGCTCTTCGTGACCTACACTCCGAAGTTAAGATCAATCAAAAATATCGATTTTCAACAAATCTATATTCCCCTTGCTGTCGACCGCTACGCCGACACGCGACGCTCCCAAACTAAGCTCGATGCCAAATTTCGAATTCCCACAATCAAGCACCCTTCAAAAAGCTCTTATTATTTCCAATAATCCATGTGAAAACGTGCATTTCTGCTGGGAAAAACTACAGTAATCACCAGATTAATGTCATAAAAATGGTAAGAAAAGGGGAGAAATGCCACTTTTTAAGTACCCTCTCCAAACTTTTTATTACCCTAATTACCCCCCATTATGTCACACCTGTCTCCCTGACACCACCTGGCACCT</canonical>
            <polymorphic>TACTGTAGTTTTTCCCAGGAGAAATGTGGAGAAATGTGTTCAGATCCATTGGAGGTTATAGTGTGTTTTTAAAAAAATTTCAGCATAGTTTTCAGACTCTAAAAATGAACGAAAATCGATTTTTGAACCGGTTTTTGAAGCCAAACGTCGTTCAAATCGGCCCAACATGATTGAAAGTTGGCCATTTTCCAACAATTTTCCTCACCAATTATCCCCGAAATTTATACAATTTTTTCAGGAAAAAAAAATTACACTGTTTCAATGTTTACAATTTTTCTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCGATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAAATTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTYGACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCAATTTTTCTAGAAAAGGTTGAAATCTGGGCAAATCCGATACTTTTGCAATCTGCGCTTTTGCAGAAGAGCTCTTCGTGACCTACACTCCGAAGTTAAGATCAATCAAAAATATCGATTTTCAACAAATCTATATTCCCCTTGCTGTCGACCGCTACGCCGACACGCGACGCTCCCAAACTAAGCTCGATGCCAAATTTCGAATTCCCACAATCAAGCACCCTTCAAAAAGCTCTTATTATTTCCAATAATCCATGTGAAAACGTGCATTTCTGCTGGGAAAAACTACAGTAATCACCAGATTAATGTCATAAAAATGGTAAGAAAAGGGGAGAAATGCCACTTTTTAAGTACCCTCTCCAAACTTTTTATTACCCTAATTACCCCCCATTATGTCACACCTGTCTCCCTGACACCACCTGGCACCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>383 227 148 117 40 39 33 13</canonical_bands>
                <polymorphic_bands>423 227 148 117 39 33 13</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>504 401 95</canonical_bands>
                <polymorphic_bands>905 95</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGACCAAGCTATTCCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAAAATTGCTCATTGAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>306</pcr_amplicon_size>
		<canonical_amplicon>CTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCGATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAAATTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTCGACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCAATTTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTGACCAAGCTATTCCTAAAAAATGTAAATTTTGAAAATCTAAAGGAGCGATTTGAGGCCCCCCGGACTTTGAATTTTGAGCCAATTCATCTCGTTCCTTGTCAAAGATTTAGAAAAATTGTCAACTGATAAATTGTTTATCATAATATCATCAATATTTTATCAGTTGACACATTTTTGATATTTTGCATTGGAGTTAAGATAATTGAGCTCAAACTTGACTYGACAAAAATACAGAAATTTCAATATGAAATCTATATTTTCGATGTTGAGAATTATCTGGAAACTTTCAATGAGCAATTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33641</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>228994</contig_pos>
        <strand>+</strand>
        <context>ACCAATGAAT[A/G]CYTTACCTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCTGCAATATTTATGAAAACCCTTATCAGCTAGCTAGATACCAATGAAT</left_flank>
        <right_flank>CCTTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCTGATCCTTCTAGTAGATTCTTCACTGAAAAATTGGAAGCTATGGAAGTCGTATTAGGACCCAGATTGACTAGTGGGTCCTCCACTGGAGAATCGGAAGCAATGGAAGCCTCGGAAGTCGAAACCGGAGCATACTGATCTAGATCCATGGATTCCGGTTCATCCAGATTGACTAGCTGATCTGATAGTTCTGATCCTTCTGGAATATCCATCACTGGAAAATCGGAAGCCTCGGAAAGCACGACTGGCTCCAACTCCTTGGATTTCCTCGCTACTCGGTTGGATATCGACAGCTTTGGATGATCCACTGATTCTTCTAGCATTTTTCTTTGCTCCAATTGGACTTGATTGGTCCATAGCTTTTGTTTAGACGATCTAGCTTGAATATCTCGAAGACTTCCTCCAGCCTTTGGTCCAAAATCCATTGCCATCAGTTTTTCGGCCTCAGTCTGCAATATTTATGAAAACCCTTATCAGCTAGCTAGATACCAATGAATGCCTTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATTCCGTCCTTCCTATCCACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCTTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTCTGATTCTTCTTCTTTCTTGGCCTTCCTGGACGTCGTTTCGCGGGAAGTGGAAGCGCTGAACTTTGGTTTTTGTGTTCTAGATCCTCTGATCCTTGACTTCCTGGAACCACCTGCGGCTCTGTCTGTGGCTCTGATCTGCCTTCTGAAGTCTCCGGAACAGCTTCTTCCGCTGAATCCAAATTTC</canonical>
            <polymorphic>CTTCTGATCCTTCTAGTAGATTCTTCACTGAAAAATTGGAAGCTATGGAAGTCGTATTAGGACCCAGATTGACTAGTGGGTCCTCCACTGGAGAATCGGAAGCAATGGAAGCCTCGGAAGTCGAAACCGGAGCATACTGATCTAGATCCATGGATTCCGGTTCATCCAGATTGACTAGCTGATCTGATAGTTCTGATCCTTCTGGAATATCCATCACTGGAAAATCGGAAGCCTCGGAAAGCACGACTGGCTCCAACTCCTTGGATTTCCTCGCTACTCGGTTGGATATCGACAGCTTTGGATGATCCACTGATTCTTCTAGCATTTTTCTTTGCTCCAATTGGACTTGATTGGTCCATAGCTTTTGTTTAGACGATCTAGCTTGAATATCTCGAAGACTTCCTCCAGCCTTTGGTCCAAAATCCATTGCCATCAGTTTTTCGGCCTCAGTCTGCAATATTTATGAAAACCCTTATCAGCTAGCTAGATACCAATGAATRCCTTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATTCCGTCCTTCCTATCCACTTTCTCTCCTTTTTGACTGTTTCCTTGTTCCACGAGCTTATCAGAAGGTCCCGATGTGCCAGCTTGATCTTCTATTTTATCTTCGACTCTCTTTTCTTGGACTGGAACCTTATCATATCCACGAGCCAGAGCTGGAGCTTGTTTTGAGTTGTCAATGCTGTTGGCGTTTCGTGTATCCGGAATTTCCAGGTCCAATGGTTCTATGAAGTCCGGATCTCTAGCTTCAGACTCTTTATCCTCCAAATTCTGATTCTTCTTCTTTCTTGGCCTTCCTGGACGTCGTTTCGCGGGAAGTGGAAGCGCTGAACTTTGGTTTTTGTGTTCTAGATCCTCTGATCCTTGACTTCCTGGAACCACCTGCGGCTCTGTCTGTGGCTCTGATCTGCCTTCTGAAGTCTCCGGAACAGCTTCTTCCGCTGAATCCAAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGGTCCATAGCTTTTGTTTA</pcr_primer_p1>
		<pcr_primer_p2>GAACAAGGAAACAGTCAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTGGTCCATAGCTTTTGTTTAGACGATCTAGCTTGAATATCTCGAAGACTTCCTCCAGCCTTTGGTCCAAAATCCATTGCCATCAGTTTTTCGGCCTCAGTCTGCAATATTTATGAAAACCCTTATCAGCTAGCTAGATACCAATGAATGCCTTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATTCCGTCCTTCCTATCCACTTTCTCTCCTTTTTGACTGTTTCCTTGTTC</canonical_amplicon>
		<polymorphic_amplicon>ATTGGTCCATAGCTTTTGTTTAGACGATCTAGCTTGAATATCTCGAAGACTTCCTCCAGCCTTTGGTCCAAAATCCATTGCCATCAGTTTTTCGGCCTCAGTCTGCAATATTTATGAAAACCCTTATCAGCTAGCTAGATACCAATGAATRCCTTACCTTCTGTTTCTTCTTCCTTTGAGACGATCCTTGGTCCATCTTCATTCCGTCCTTCCTATCCACTTTCTCTCCTTTTTGACTGTTTCCTTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33642</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>259169</contig_pos>
        <strand>+</strand>
        <context>CTAGAAAACT[C/T]ACTATAATGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTCCATGTACCGCATGGCCGAATTTTCGCATCCCATGGCCTAGAAAACT</left_flank>
        <right_flank>ACTATAATGCCAATACAGCCAACGGAAGTGAAAACATCCAAAAAATTCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTATGGGATTTCAAAACTTCCAAAATATCAGAAAATTTGAAAATTCAGAAACTCAGGAATTGGGAAATTCGACCCCATGGACCCCATGGACCCCATAGACCCATGGATCCCATGGGCCCCATGGATACAAGCACTCCATGGACCCATGGACAAATGGACCCAAGGACTCGAGGACCCATGGACACATGGACACATGGACCCAAGGACCCCATGGACCCATGGACCCATGGACCCATGGACTCATGGACCCGTGAACCCATGGACCTATGGACACAAGCACTCCATGGACCCAAGGACCCCATGGACCCATGGACCCATAGACTCATGGACCCGTGGACACAAGTACTCCATGGACCCAAGGACCCCATTCACTCCATGGACCCAAGGACCCCATTCACTCCATGTACCCTATGGACCCCATGGAACCAAGGACCAAGGACCCATAGACTCCATGTACCGCATGGCCGAATTTTCGCATCCCATGGCCTAGAAAACTCACTATAATGCCAATACAGCCAACGGAAGTGAAAACATCCAAAAAATTCCAAATTCTCTCTCCATTTTCTTCGATTCTCCAGTACATTGGTGAAATAAATGCCACCTTTTCGGAATCCTCGCCATAAAAATTTTGCAGTTCGAGTTTCAGAAATTCCTGTTTTTCTACAGTATTCCACATTCCAAATTTCACAAAAAAGAACCAAAAAATGAAAGAGAACATAGATGGAACGAATAATAGAATCAGTTTCGGTCCATCGAAGAATTTCATTTGGTCCGGCCTGAAAATAACGGCCTAGAAATTTGAAAATTGGAGTTCTAGGCCATGGACGTGGCCTAGAAAACTCAATAAAACTAACCGACAGAAAACGAGAAATCTGTAGAAAAACTGTGTTGCTAGCAGGGAAATAACCAGCGCAAATGAGCCACAGTAGAGACCTTAATTAGTTTGTTTTCATCTTCTGCACCCCATGGACCCCATGGACCCAAGGAGCCAAGGACC</canonical>
            <polymorphic>TATTTATGGGATTTCAAAACTTCCAAAATATCAGAAAATTTGAAAATTCAGAAACTCAGGAATTGGGAAATTCGACCCCATGGACCCCATGGACCCCATAGACCCATGGATCCCATGGGCCCCATGGATACAAGCACTCCATGGACCCATGGACAAATGGACCCAAGGACTCGAGGACCCATGGACACATGGACACATGGACCCAAGGACCCCATGGACCCATGGACCCATGGACCCATGGACTCATGGACCCGTGAACCCATGGACCTATGGACACAAGCACTCCATGGACCCAAGGACCCCATGGACCCATGGACCCATAGACTCATGGACCCGTGGACACAAGTACTCCATGGACCCAAGGACCCCATTCACTCCATGGACCCAAGGACCCCATTCACTCCATGTACCCTATGGACCCCATGGAACCAAGGACCAAGGACCCATAGACTCCATGTACCGCATGGCCGAATTTTCGCATCCCATGGCCTAGAAAACTYACTATAATGCCAATACAGCCAACGGAAGTGAAAACATCCAAAAAATTCCAAATTCTCTCTCCATTTTCTTCGATTCTCCAGTACATTGGTGAAATAAATGCCACCTTTTCGGAATCCTCGCCATAAAAATTTTGCAGTTCGAGTTTCAGAAATTCCTGTTTTTCTACAGTATTCCACATTCCAAATTTCACAAAAAAGAACCAAAAAATGAAAGAGAACATAGATGGAACGAATAATAGAATCAGTTTCGGTCCATCGAAGAATTTCATTTGGTCCGGCCTGAAAATAACGGCCTAGAAATTTGAAAATTGGAGTTCTAGGCCATGGACGTGGCCTAGAAAACTCAATAAAACTAACCGACAGAAAACGAGAAATCTGTAGAAAAACTGTGTTGCTAGCAGGGAAATAACCAGCGCAAATGAGCCACAGTAGAGACCTTAATTAGTTTGTTTTCATCTTCTGCACCCCATGGACCCCATGGACCCAAGGAGCCAAGGACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>142 136 101 73 61 61 59 56 51 38 36 35 32 29 26 20 14 12 8 6 4</canonical_bands>
                <polymorphic_bands>142 136 130 73 61 61 59 56 51 38 36 35 32 26 20 14 12 8 6 4</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>504 323 173</canonical_bands>
                <polymorphic_bands>827 173</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCTATGGACACAAGCACTC</pcr_primer_p1>
		<pcr_primer_p2>AAGAAAATGGAGAGAGAATTTG</pcr_primer_p2>
		<pcr_amplicon_size>305</pcr_amplicon_size>
		<canonical_amplicon>ACCTATGGACACAAGCACTCCATGGACCCAAGGACCCCATGGACCCATGGACCCATAGACTCATGGACCCGTGGACACAAGTACTCCATGGACCCAAGGACCCCATTCACTCCATGGACCCAAGGACCCCATTCACTCCATGTACCCTATGGACCCCATGGAACCAAGGACCAAGGACCCATAGACTCCATGTACCGCATGGCCGAATTTTCGCATCCCATGGCCTAGAAAACTCACTATAATGCCAATACAGCCAACGGAAGTGAAAACATCCAAAAAATTCCAAATTCTCTCTCCATTTTCTT</canonical_amplicon>
		<polymorphic_amplicon>ACCTATGGACACAAGCACTCCATGGACCCAAGGACCCCATGGACCCATGGACCCATAGACTCATGGACCCGTGGACACAAGTACTCCATGGACCCAAGGACCCCATTCACTCCATGGACCCAAGGACCCCATTCACTCCATGTACCCTATGGACCCCATGGAACCAAGGACCAAGGACCCATAGACTCCATGTACCGCATGGCCGAATTTTCGCATCCCATGGCCTAGAAAACTYACTATAATGCCAATACAGCCAACGGAAGTGAAAACATCCAAAAAATTCCAAATTCTCTCTCCATTTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33645</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>272176</contig_pos>
        <strand></strand>
        <context>TGAATTTTTT[G/T]ATCTACATAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAATATTTGGATTTTGAGCGTTTTTCTTGGTGTGAATTTGTGAATTTTTT</left_flank>
        <right_flank>ATCTACATAGTGATTCAATAAAAGATTAACAATTTATTGACGAAAAATGG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAATCGATAAGTCAATATTTTACAGAAGCTCCGTTTTTTGTATAGAAAATTTTCCCCTGTTTTCGGCGATTCAAATACACTTATGTTTATCGCTCAACACTTTCTAGAACAATTTTTAGAGCGGTTTTTCAGATTTATCGATTTTTTTCGCTGAAAGTCGATGTTTGTTGTTTTTTTTTGCAGAAATTGAGGTTTTGACCTGGAAATTGTTCTAGAAATCTTTTTAGAAGGGTTCTGATCGCCAAAAATCGCGCTGAATTCTCAAAAAAAAATCGATTTTTGCAGATTATCGATTTCTACACCGGCTCGCGAACCGATTCAAAAGAAAAATCGCATCGAAAATGGAATTTCTGGAAAAAAATCTGCTTGAGCATCGCCATTGTTTTAATTGTCCTCCCCATTTTGTACTTTTTGATCTACCCATTTTTACTAATTTTTTTGTACTTGAATATTTGGATTTTGAGCGTTTTTCTTGGTGTGAATTTGTGAATTTTTTGATCTACATAGTGATTCAATAAAAGATTAACAATTTATTGACGAAAAATGGAAAATTTCCAAAAATTGATCAATTATCGATTATTGGGGTCCCGGAGCGATCTCGATGACGCGCTTAGCTTCCTGAAAATGGAAAATCAATTAATTTTCAGAAAAAAATTGCTGAAAGTCGATAAATTTTCGATTTTTGGCTGAAAAAGCGAAAAATCGATAATTTTTCAAAACTTTTCAAATATTAAAAATTATCGATTTTCGGGGTTTTCGACACCGCAAAATTCAAATCTGCTAACCATAGCTTCCGTCGGCTTCTCTATCGAATAGAAATTGCACAAAAACAAGTGATGAAAGTAGTTGCGGCTGGCGGAAGAGCACAAACTACACTCGACATTTTGGCGGGGACATGTGGAGTGCGATGGAGCGCATTTGGGTTCGGCAACATATAAAAACCAAAAAAATTAACGATCCCATCGATTTCTTCCAGCGATTTTCGACCTGAAAATTA</canonical>
            <polymorphic>GAAAAATCGATAAGTCAATATTTTACAGAAGCTCCGTTTTTTGTATAGAAAATTTTCCCCTGTTTTCGGCGATTCAAATACACTTATGTTTATCGCTCAACACTTTCTAGAACAATTTTTAGAGCGGTTTTTCAGATTTATCGATTTTTTTCGCTGAAAGTCGATGTTTGTTGTTTTTTTTTGCAGAAATTGAGGTTTTGACCTGGAAATTGTTCTAGAAATCTTTTTAGAAGGGTTCTGATCGCCAAAAATCGCGCTGAATTCTCAAAAAAAAATCGATTTTTGCAGATTATCGATTTCTACACCGGCTCGCGAACCGATTCAAAAGAAAAATCGCATCGAAAATGGAATTTCTGGAAAAAAATCTGCTTGAGCATCGCCATTGTTTTAATTGTCCTCCCCATTTTGTACTTTTTGATCTACCCATTTTTACTAATTTTTTTGTACTTGAATATTTGGATTTTGAGCGTTTTTCTTGGTGTGAATTTGTGAATTTTTTKATCTACATAGTGATTCAATAAAAGATTAACAATTTATTGACGAAAAATGGAAAATTTCCAAAAATTGATCAATTATCGATTATTGGGGTCCCGGAGCGATCTCGATGACGCGCTTAGCTTCCTGAAAATGGAAAATCAATTAATTTTCAGAAAAAAATTGCTGAAAGTCGATAAATTTTCGATTTTTGGCTGAAAAAGCGAAAAATCGATAATTTTTCAAAACTTTTCAAATATTAAAAATTATCGATTTTCGGGGTTTTCGACACCGCAAAATTCAAATCTGCTAACCATAGCTTCCGTCGGCTTCTCTATCGAATAGAAATTGCACAAAAACAAGTGATGAAAGTAGTTGCGGCTGGCGGAAGAGCACAAACTACACTCGACATTTTGGCGGGGACATGTGGAGTGCGATGGAGCGCATTTGGGTTCGGCAACATATAAAAACCAAAAAAATTAACGATCCCATCGATTTCTTCCAGCGATTTTCGACCTGAAAATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>361 239 177 83 67 42 31</canonical_bands>
                <polymorphic_bands>361 239 177 150 42 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTACTTGAATATTTGGATTTTG</pcr_primer_p1>
		<pcr_primer_p2>ATTTATCGACTTTCAGCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>TTGTACTTGAATATTTGGATTTTGAGCGTTTTTCTTGGTGTGAATTTGTGAATTTTTTGATCTACATAGTGATTCAATAAAAGATTAACAATTTATTGACGAAAAATGGAAAATTTCCAAAAATTGATCAATTATCGATTATTGGGGTCCCGGAGCGATCTCGATGACGCGCTTAGCTTCCTGAAAATGGAAAATCAATTAATTTTCAGAAAAAAATTGCTGAAAGTCGATAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTGTACTTGAATATTTGGATTTTGAGCGTTTTTCTTGGTGTGAATTTGTGAATTTTTTKATCTACATAGTGATTCAATAAAAGATTAACAATTTATTGACGAAAAATGGAAAATTTCCAAAAATTGATCAATTATCGATTATTGGGGTCCCGGAGCGATCTCGATGACGCGCTTAGCTTCCTGAAAATGGAAAATCAATTAATTTTCAGAAAAAAATTGCTGAAAGTCGATAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33646</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>272201</contig_pos>
        <strand></strand>
        <context>TCAATAAAAG[A/G]TTAACAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTGGTGTGAATTTGTGAATTTTTTGATCTACATAGTGATTCAATAAAAG</left_flank>
        <right_flank>TTAACAATTTATTGACGAAAAATGGAAAATTTCCAAAAATTGATCAATTA</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAAGCTCCGTTTTTTGTATAGAAAATTTTCCCCTGTTTTCGGCGATTCAAATACACTTATGTTTATCGCTCAACACTTTCTAGAACAATTTTTAGAGCGGTTTTTCAGATTTATCGATTTTTTTCGCTGAAAGTCGATGTTTGTTGTTTTTTTTTGCAGAAATTGAGGTTTTGACCTGGAAATTGTTCTAGAAATCTTTTTAGAAGGGTTCTGATCGCCAAAAATCGCGCTGAATTCTCAAAAAAAAATCGATTTTTGCAGATTATCGATTTCTACACCGGCTCGCGAACCGATTCAAAAGAAAAATCGCATCGAAAATGGAATTTCTGGAAAAAAATCTGCTTGAGCATCGCCATTGTTTTAATTGTCCTCCCCATTTTGTACTTTTTGATCTACCCATTTTTACTAATTTTTTTGTACTTGAATATTTGGATTTTGAGCGTTTTTCTTGGTGTGAATTTGTGAATTTTTTGATCTACATAGTGATTCAATAAAAGATTAACAATTTATTGACGAAAAATGGAAAATTTCCAAAAATTGATCAATTATCGATTATTGGGGTCCCGGAGCGATCTCGATGACGCGCTTAGCTTCCTGAAAATGGAAAATCAATTAATTTTCAGAAAAAAATTGCTGAAAGTCGATAAATTTTCGATTTTTGGCTGAAAAAGCGAAAAATCGATAATTTTTCAAAACTTTTCAAATATTAAAAATTATCGATTTTCGGGGTTTTCGACACCGCAAAATTCAAATCTGCTAACCATAGCTTCCGTCGGCTTCTCTATCGAATAGAAATTGCACAAAAACAAGTGATGAAAGTAGTTGCGGCTGGCGGAAGAGCACAAACTACACTCGACATTTTGGCGGGGACATGTGGAGTGCGATGGAGCGCATTTGGGTTCGGCAACATATAAAAACCAAAAAAATTAACGATCCCATCGATTTCTTCCAGCGATTTTCGACCTGAAAATTAATATTTGTCTGTATAGAAAAAAAAG</canonical>
            <polymorphic>CAGAAGCTCCGTTTTTTGTATAGAAAATTTTCCCCTGTTTTCGGCGATTCAAATACACTTATGTTTATCGCTCAACACTTTCTAGAACAATTTTTAGAGCGGTTTTTCAGATTTATCGATTTTTTTCGCTGAAAGTCGATGTTTGTTGTTTTTTTTTGCAGAAATTGAGGTTTTGACCTGGAAATTGTTCTAGAAATCTTTTTAGAAGGGTTCTGATCGCCAAAAATCGCGCTGAATTCTCAAAAAAAAATCGATTTTTGCAGATTATCGATTTCTACACCGGCTCGCGAACCGATTCAAAAGAAAAATCGCATCGAAAATGGAATTTCTGGAAAAAAATCTGCTTGAGCATCGCCATTGTTTTAATTGTCCTCCCCATTTTGTACTTTTTGATCTACCCATTTTTACTAATTTTTTTGTACTTGAATATTTGGATTTTGAGCGTTTTTCTTGGTGTGAATTTGTGAATTTTTTGATCTACATAGTGATTCAATAAAAGRTTAACAATTTATTGACGAAAAATGGAAAATTTCCAAAAATTGATCAATTATCGATTATTGGGGTCCCGGAGCGATCTCGATGACGCGCTTAGCTTCCTGAAAATGGAAAATCAATTAATTTTCAGAAAAAAATTGCTGAAAGTCGATAAATTTTCGATTTTTGGCTGAAAAAGCGAAAAATCGATAATTTTTCAAAACTTTTCAAATATTAAAAATTATCGATTTTCGGGGTTTTCGACACCGCAAAATTCAAATCTGCTAACCATAGCTTCCGTCGGCTTCTCTATCGAATAGAAATTGCACAAAAACAAGTGATGAAAGTAGTTGCGGCTGGCGGAAGAGCACAAACTACACTCGACATTTTGGCGGGGACATGTGGAGTGCGATGGAGCGCATTTGGGTTCGGCAACATATAAAAACCAAAAAAATTAACGATCCCATCGATTTCTTCCAGCGATTTTCGACCTGAAAATTAATATTTGTCTGTATAGAAAAAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTTCTTGGTGTGAATTTGT</pcr_primer_p1>
		<pcr_primer_p2>AATTATCGATTTTTCGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTTTTCTTGGTGTGAATTTGTGAATTTTTTGATCTACATAGTGATTCAATAAAAGATTAACAATTTATTGACGAAAAATGGAAAATTTCCAAAAATTGATCAATTATCGATTATTGGGGTCCCGGAGCGATCTCGATGACGCGCTTAGCTTCCTGAAAATGGAAAATCAATTAATTTTCAGAAAAAAATTGCTGAAAGTCGATAAATTTTCGATTTTTGGCTGAAAAAGCGAAAAATCGATAATT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTTCTTGGTGTGAATTTGTGAATTTTTTGATCTACATAGTGATTCAATAAAAGRTTAACAATTTATTGACGAAAAATGGAAAATTTCCAAAAATTGATCAATTATCGATTATTGGGGTCCCGGAGCGATCTCGATGACGCGCTTAGCTTCCTGAAAATGGAAAATCAATTAATTTTCAGAAAAAAATTGCTGAAAGTCGATAAATTTTCGATTTTTGGCTGAAAAAGCGAAAAATCGATAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33647</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>272218</contig_pos>
        <strand></strand>
        <context>ATTTATTGAC[G/A]AAAAATGGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATTTTTTGATCTACATAGTGATTCAATAAAAGATTAACAATTTATTGAC</left_flank>
        <right_flank>AAAAATGGAAAATTTCCAAAAATTGATCAATTATCGATTATTGGGGTCCC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATAGAAAATTTTCCCCTGTTTTCGGCGATTCAAATACACTTATGTTTATCGCTCAACACTTTCTAGAACAATTTTTAGAGCGGTTTTTCAGATTTATCGATTTTTTTCGCTGAAAGTCGATGTTTGTTGTTTTTTTTTGCAGAAATTGAGGTTTTGACCTGGAAATTGTTCTAGAAATCTTTTTAGAAGGGTTCTGATCGCCAAAAATCGCGCTGAATTCTCAAAAAAAAATCGATTTTTGCAGATTATCGATTTCTACACCGGCTCGCGAACCGATTCAAAAGAAAAATCGCATCGAAAATGGAATTTCTGGAAAAAAATCTGCTTGAGCATCGCCATTGTTTTAATTGTCCTCCCCATTTTGTACTTTTTGATCTACCCATTTTTACTAATTTTTTTGTACTTGAATATTTGGATTTTGAGCGTTTTTCTTGGTGTGAATTTGTGAATTTTTTGATCTACATAGTGATTCAATAAAAGATTAACAATTTATTGACGAAAAATGGAAAATTTCCAAAAATTGATCAATTATCGATTATTGGGGTCCCGGAGCGATCTCGATGACGCGCTTAGCTTCCTGAAAATGGAAAATCAATTAATTTTCAGAAAAAAATTGCTGAAAGTCGATAAATTTTCGATTTTTGGCTGAAAAAGCGAAAAATCGATAATTTTTCAAAACTTTTCAAATATTAAAAATTATCGATTTTCGGGGTTTTCGACACCGCAAAATTCAAATCTGCTAACCATAGCTTCCGTCGGCTTCTCTATCGAATAGAAATTGCACAAAAACAAGTGATGAAAGTAGTTGCGGCTGGCGGAAGAGCACAAACTACACTCGACATTTTGGCGGGGACATGTGGAGTGCGATGGAGCGCATTTGGGTTCGGCAACATATAAAAACCAAAAAAATTAACGATCCCATCGATTTCTTCCAGCGATTTTCGACCTGAAAATTAATATTTGTCTGTATAGAAAAAAAAGTATAGAAAAATGGGCTA</canonical>
            <polymorphic>GTATAGAAAATTTTCCCCTGTTTTCGGCGATTCAAATACACTTATGTTTATCGCTCAACACTTTCTAGAACAATTTTTAGAGCGGTTTTTCAGATTTATCGATTTTTTTCGCTGAAAGTCGATGTTTGTTGTTTTTTTTTGCAGAAATTGAGGTTTTGACCTGGAAATTGTTCTAGAAATCTTTTTAGAAGGGTTCTGATCGCCAAAAATCGCGCTGAATTCTCAAAAAAAAATCGATTTTTGCAGATTATCGATTTCTACACCGGCTCGCGAACCGATTCAAAAGAAAAATCGCATCGAAAATGGAATTTCTGGAAAAAAATCTGCTTGAGCATCGCCATTGTTTTAATTGTCCTCCCCATTTTGTACTTTTTGATCTACCCATTTTTACTAATTTTTTTGTACTTGAATATTTGGATTTTGAGCGTTTTTCTTGGTGTGAATTTGTGAATTTTTTGATCTACATAGTGATTCAATAAAAGATTAACAATTTATTGACRAAAAATGGAAAATTTCCAAAAATTGATCAATTATCGATTATTGGGGTCCCGGAGCGATCTCGATGACGCGCTTAGCTTCCTGAAAATGGAAAATCAATTAATTTTCAGAAAAAAATTGCTGAAAGTCGATAAATTTTCGATTTTTGGCTGAAAAAGCGAAAAATCGATAATTTTTCAAAACTTTTCAAATATTAAAAATTATCGATTTTCGGGGTTTTCGACACCGCAAAATTCAAATCTGCTAACCATAGCTTCCGTCGGCTTCTCTATCGAATAGAAATTGCACAAAAACAAGTGATGAAAGTAGTTGCGGCTGGCGGAAGAGCACAAACTACACTCGACATTTTGGCGGGGACATGTGGAGTGCGATGGAGCGCATTTGGGTTCGGCAACATATAAAAACCAAAAAAATTAACGATCCCATCGATTTCTTCCAGCGATTTTCGACCTGAAAATTAATATTTGTCTGTATAGAAAAAAAAGTATAGAAAAATGGGCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTTCTTGGTGTGAATTTGT</pcr_primer_p1>
		<pcr_primer_p2>AATTATCGATTTTTCGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTTTTCTTGGTGTGAATTTGTGAATTTTTTGATCTACATAGTGATTCAATAAAAGATTAACAATTTATTGACGAAAAATGGAAAATTTCCAAAAATTGATCAATTATCGATTATTGGGGTCCCGGAGCGATCTCGATGACGCGCTTAGCTTCCTGAAAATGGAAAATCAATTAATTTTCAGAAAAAAATTGCTGAAAGTCGATAAATTTTCGATTTTTGGCTGAAAAAGCGAAAAATCGATAATT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTTCTTGGTGTGAATTTGTGAATTTTTTGATCTACATAGTGATTCAATAAAAGATTAACAATTTATTGACRAAAAATGGAAAATTTCCAAAAATTGATCAATTATCGATTATTGGGGTCCCGGAGCGATCTCGATGACGCGCTTAGCTTCCTGAAAATGGAAAATCAATTAATTTTCAGAAAAAAATTGCTGAAAGTCGATAAATTTTCGATTTTTGGCTGAAAAAGCGAAAAATCGATAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33648</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>272269</contig_pos>
        <strand></strand>
        <context>TTGGGGTCCC[G/C]GAGCGATCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AAAAATGGAAAATTTCCAAAAATTGATCAATTATCGATTATTGGGGTCCC</left_flank>
        <right_flank>GAGCGATCTCGATGACGCGCTTAGCTTCCTGAAAATGGAAAATCAATTAA</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCTCAACACTTTCTAGAACAATTTTTAGAGCGGTTTTTCAGATTTATCGATTTTTTTCGCTGAAAGTCGATGTTTGTTGTTTTTTTTTGCAGAAATTGAGGTTTTGACCTGGAAATTGTTCTAGAAATCTTTTTAGAAGGGTTCTGATCGCCAAAAATCGCGCTGAATTCTCAAAAAAAAATCGATTTTTGCAGATTATCGATTTCTACACCGGCTCGCGAACCGATTCAAAAGAAAAATCGCATCGAAAATGGAATTTCTGGAAAAAAATCTGCTTGAGCATCGCCATTGTTTTAATTGTCCTCCCCATTTTGTACTTTTTGATCTACCCATTTTTACTAATTTTTTTGTACTTGAATATTTGGATTTTGAGCGTTTTTCTTGGTGTGAATTTGTGAATTTTTTGATCTACATAGTGATTCAATAAAAGATTAACAATTTATTGACGAAAAATGGAAAATTTCCAAAAATTGATCAATTATCGATTATTGGGGTCCCGGAGCGATCTCGATGACGCGCTTAGCTTCCTGAAAATGGAAAATCAATTAATTTTCAGAAAAAAATTGCTGAAAGTCGATAAATTTTCGATTTTTGGCTGAAAAAGCGAAAAATCGATAATTTTTCAAAACTTTTCAAATATTAAAAATTATCGATTTTCGGGGTTTTCGACACCGCAAAATTCAAATCTGCTAACCATAGCTTCCGTCGGCTTCTCTATCGAATAGAAATTGCACAAAAACAAGTGATGAAAGTAGTTGCGGCTGGCGGAAGAGCACAAACTACACTCGACATTTTGGCGGGGACATGTGGAGTGCGATGGAGCGCATTTGGGTTCGGCAACATATAAAAACCAAAAAAATTAACGATCCCATCGATTTCTTCCAGCGATTTTCGACCTGAAAATTAATATTTGTCTGTATAGAAAAAAAAGTATAGAAAAATGGGCTAGAAAATCTCAAAAATCGATAAAAAAATCAATTAAATCTACGACAAAAACAA</canonical>
            <polymorphic>CGCTCAACACTTTCTAGAACAATTTTTAGAGCGGTTTTTCAGATTTATCGATTTTTTTCGCTGAAAGTCGATGTTTGTTGTTTTTTTTTGCAGAAATTGAGGTTTTGACCTGGAAATTGTTCTAGAAATCTTTTTAGAAGGGTTCTGATCGCCAAAAATCGCGCTGAATTCTCAAAAAAAAATCGATTTTTGCAGATTATCGATTTCTACACCGGCTCGCGAACCGATTCAAAAGAAAAATCGCATCGAAAATGGAATTTCTGGAAAAAAATCTGCTTGAGCATCGCCATTGTTTTAATTGTCCTCCCCATTTTGTACTTTTTGATCTACCCATTTTTACTAATTTTTTTGTACTTGAATATTTGGATTTTGAGCGTTTTTCTTGGTGTGAATTTGTGAATTTTTTGATCTACATAGTGATTCAATAAAAGATTAACAATTTATTGACGAAAAATGGAAAATTTCCAAAAATTGATCAATTATCGATTATTGGGGTCCCSGAGCGATCTCGATGACGCGCTTAGCTTCCTGAAAATGGAAAATCAATTAATTTTCAGAAAAAAATTGCTGAAAGTCGATAAATTTTCGATTTTTGGCTGAAAAAGCGAAAAATCGATAATTTTTCAAAACTTTTCAAATATTAAAAATTATCGATTTTCGGGGTTTTCGACACCGCAAAATTCAAATCTGCTAACCATAGCTTCCGTCGGCTTCTCTATCGAATAGAAATTGCACAAAAACAAGTGATGAAAGTAGTTGCGGCTGGCGGAAGAGCACAAACTACACTCGACATTTTGGCGGGGACATGTGGAGTGCGATGGAGCGCATTTGGGTTCGGCAACATATAAAAACCAAAAAAATTAACGATCCCATCGATTTCTTCCAGCGATTTTCGACCTGAAAATTAATATTTGTCTGTATAGAAAAAAAAGTATAGAAAAATGGGCTAGAAAATCTCAAAAATCGATAAAAAAATCAATTAAATCTACGACAAAAACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>502 388 110</canonical_bands>
                <polymorphic_bands>890 110</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 286 212</canonical_bands>
                <polymorphic_bands>788 212</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTTCTTGGTGTGAATTTGT</pcr_primer_p1>
		<pcr_primer_p2>AATTATCGATTTTTCGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTTTTCTTGGTGTGAATTTGTGAATTTTTTGATCTACATAGTGATTCAATAAAAGATTAACAATTTATTGACGAAAAATGGAAAATTTCCAAAAATTGATCAATTATCGATTATTGGGGTCCCGGAGCGATCTCGATGACGCGCTTAGCTTCCTGAAAATGGAAAATCAATTAATTTTCAGAAAAAAATTGCTGAAAGTCGATAAATTTTCGATTTTTGGCTGAAAAAGCGAAAAATCGATAATT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTTCTTGGTGTGAATTTGTGAATTTTTTGATCTACATAGTGATTCAATAAAAGATTAACAATTTATTGACGAAAAATGGAAAATTTCCAAAAATTGATCAATTATCGATTATTGGGGTCCCSGAGCGATCTCGATGACGCGCTTAGCTTCCTGAAAATGGAAAATCAATTAATTTTCAGAAAAAAATTGCTGAAAGTCGATAAATTTTCGATTTTTGGCTGAAAAAGCGAAAAATCGATAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33649</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>272314</contig_pos>
        <strand></strand>
        <context>ATGGAAAATC[A/G]ATTAATTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCCCGGAGCGATCTCGATGACGCGCTTAGCTTCCTGAAAATGGAAAATC</left_flank>
        <right_flank>ATTAATTTTCAGAAAAAAATTGCTGAAAGTCGATAAATTTTCGATTTTTG</right_flank>
        <qual_score>33</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCGATTTTTTTCGCTGAAAGTCGATGTTTGTTGTTTTTTTTTGCAGAAATTGAGGTTTTGACCTGGAAATTGTTCTAGAAATCTTTTTAGAAGGGTTCTGATCGCCAAAAATCGCGCTGAATTCTCAAAAAAAAATCGATTTTTGCAGATTATCGATTTCTACACCGGCTCGCGAACCGATTCAAAAGAAAAATCGCATCGAAAATGGAATTTCTGGAAAAAAATCTGCTTGAGCATCGCCATTGTTTTAATTGTCCTCCCCATTTTGTACTTTTTGATCTACCCATTTTTACTAATTTTTTTGTACTTGAATATTTGGATTTTGAGCGTTTTTCTTGGTGTGAATTTGTGAATTTTTTGATCTACATAGTGATTCAATAAAAGATTAACAATTTATTGACGAAAAATGGAAAATTTCCAAAAATTGATCAATTATCGATTATTGGGGTCCCGGAGCGATCTCGATGACGCGCTTAGCTTCCTGAAAATGGAAAATCAATTAATTTTCAGAAAAAAATTGCTGAAAGTCGATAAATTTTCGATTTTTGGCTGAAAAAGCGAAAAATCGATAATTTTTCAAAACTTTTCAAATATTAAAAATTATCGATTTTCGGGGTTTTCGACACCGCAAAATTCAAATCTGCTAACCATAGCTTCCGTCGGCTTCTCTATCGAATAGAAATTGCACAAAAACAAGTGATGAAAGTAGTTGCGGCTGGCGGAAGAGCACAAACTACACTCGACATTTTGGCGGGGACATGTGGAGTGCGATGGAGCGCATTTGGGTTCGGCAACATATAAAAACCAAAAAAATTAACGATCCCATCGATTTCTTCCAGCGATTTTCGACCTGAAAATTAATATTTGTCTGTATAGAAAAAAAAGTATAGAAAAATGGGCTAGAAAATCTCAAAAATCGATAAAAAAATCAATTAAATCTACGACAAAAACAAATTTATTTTCTAGGGGGCTAAAACAGGATTGACAGATAAAAATTG</canonical>
            <polymorphic>TATCGATTTTTTTCGCTGAAAGTCGATGTTTGTTGTTTTTTTTTGCAGAAATTGAGGTTTTGACCTGGAAATTGTTCTAGAAATCTTTTTAGAAGGGTTCTGATCGCCAAAAATCGCGCTGAATTCTCAAAAAAAAATCGATTTTTGCAGATTATCGATTTCTACACCGGCTCGCGAACCGATTCAAAAGAAAAATCGCATCGAAAATGGAATTTCTGGAAAAAAATCTGCTTGAGCATCGCCATTGTTTTAATTGTCCTCCCCATTTTGTACTTTTTGATCTACCCATTTTTACTAATTTTTTTGTACTTGAATATTTGGATTTTGAGCGTTTTTCTTGGTGTGAATTTGTGAATTTTTTGATCTACATAGTGATTCAATAAAAGATTAACAATTTATTGACGAAAAATGGAAAATTTCCAAAAATTGATCAATTATCGATTATTGGGGTCCCGGAGCGATCTCGATGACGCGCTTAGCTTCCTGAAAATGGAAAATCRATTAATTTTCAGAAAAAAATTGCTGAAAGTCGATAAATTTTCGATTTTTGGCTGAAAAAGCGAAAAATCGATAATTTTTCAAAACTTTTCAAATATTAAAAATTATCGATTTTCGGGGTTTTCGACACCGCAAAATTCAAATCTGCTAACCATAGCTTCCGTCGGCTTCTCTATCGAATAGAAATTGCACAAAAACAAGTGATGAAAGTAGTTGCGGCTGGCGGAAGAGCACAAACTACACTCGACATTTTGGCGGGGACATGTGGAGTGCGATGGAGCGCATTTGGGTTCGGCAACATATAAAAACCAAAAAAATTAACGATCCCATCGATTTCTTCCAGCGATTTTCGACCTGAAAATTAATATTTGTCTGTATAGAAAAAAAAGTATAGAAAAATGGGCTAGAAAATCTCAAAAATCGATAAAAAAATCAATTAAATCTACGACAAAAACAAATTTATTTTCTAGGGGGCTAAAACAGGATTGACAGATAAAAATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>131 89 75 67 52 49 49 49 45 44 41 41 39 37 33 28 22 22 20 18 14 10 8 8 5 4</canonical_bands>
                <polymorphic_bands>131 89 75 71 52 49 49 49 45 44 41 41 39 37 33 28 22 22 20 18 14 10 8 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTTCTTGGTGTGAATTTGT</pcr_primer_p1>
		<pcr_primer_p2>AATTATCGATTTTTCGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTTTTCTTGGTGTGAATTTGTGAATTTTTTGATCTACATAGTGATTCAATAAAAGATTAACAATTTATTGACGAAAAATGGAAAATTTCCAAAAATTGATCAATTATCGATTATTGGGGTCCCGGAGCGATCTCGATGACGCGCTTAGCTTCCTGAAAATGGAAAATCAATTAATTTTCAGAAAAAAATTGCTGAAAGTCGATAAATTTTCGATTTTTGGCTGAAAAAGCGAAAAATCGATAATT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTTCTTGGTGTGAATTTGTGAATTTTTTGATCTACATAGTGATTCAATAAAAGATTAACAATTTATTGACGAAAAATGGAAAATTTCCAAAAATTGATCAATTATCGATTATTGGGGTCCCGGAGCGATCTCGATGACGCGCTTAGCTTCCTGAAAATGGAAAATCRATTAATTTTCAGAAAAAAATTGCTGAAAGTCGATAAATTTTCGATTTTTGGCTGAAAAAGCGAAAAATCGATAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33650</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>358288</contig_pos>
        <strand>+</strand>
        <context>TACAGTGGTA[C/G]GTAGGAATGG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGGGTCCCGATGATGGGGACCTTTGAGTTCCCATAATGGGTACAGTGGTA</left_flank>
        <right_flank>GTAGGAATGGGGTTACCAAAATAGGGACCGGGTCCCCATAATAGAGATTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAAGGTATCAATCGATAAAGATAAGCTGGCAGAGCAAAGGAAGGAGACACTGGAACTGGCGGATATGTTGGGAGAGGGACAGGCCAAATTGGACGATTTGGAGGCGTTGGCAGCGAAGATGGAGGATGGGAAGGGTACATCCAGACAGATTTCTGAACTCGGAGCACGACTTCAACGACAGACCTCGGAGCTCAAGGCACGAGGAGATCGGATCAATAAGCTCGATGGGAAGGCAACTGCTTTTGCCGACTCGGAACGAGCTGTGTTGGAGTATATGGAGAAGAAGAGGGAGCAGTTGGAGACGTTCCCGGTGCCAACGACCAAGGAGGGAGTGAAAGCGCAGTTGCAGGTACGCTATGGGGTCCAAGTAAAGGGGTGGGGTGCCCATAATGGAGGCTTTGGGTTCCCGATGATGGGGTCTTTGGGGTCCCGATGATGGGGACCTTTGGGGTCCCGATGATGGGGACCTTTGAGTTCCCATAATGGGTACAGTGGTAGGTAGGAATGGGGTTACCAAAATAGGGACCGGGTCCCCATAATAGAGATTGCAGAATCCGTATGATGGCGACAGTTGCAGTTAGGCATGGGTACCCCATAATGGGGTATTCGGGTTCCCGATAATGGGGGCATGGGGTCAGTTGGTAGTAGGGATAGGGCCCCCATAATAGAGATAGCAGGGGTACCCATAATGGGGACAATTGCAAGTTGGTATGGGGTGCCGATAATGGGGAGTTTGGGGCCCCGATAATAGGGATATAGGAGTTCCCATAATGGGGGATTTCAGGGACCCCATAATGGAGATTGCGGGGTTCCCATAATGGAAACAGTTGCAAGTAGATATGGGGCCCGATAATGGGGACATTGGGGTTCCCATAGTGGTGACAGTTGCAGCTAGGTATGGGGTCGCCATAATGGGGGCACTTGTAGTTAGGTACCCATAATGGGGGCCATATTATCCATAATTGGGATTGCATGGGGTATTTGGGATTCCGATAATG</canonical>
            <polymorphic>GATAAGGTATCAATCGATAAAGATAAGCTGGCAGAGCAAAGGAAGGAGACACTGGAACTGGCGGATATGTTGGGAGAGGGACAGGCCAAATTGGACGATTTGGAGGCGTTGGCAGCGAAGATGGAGGATGGGAAGGGTACATCCAGACAGATTTCTGAACTCGGAGCACGACTTCAACGACAGACCTCGGAGCTCAAGGCACGAGGAGATCGGATCAATAAGCTCGATGGGAAGGCAACTGCTTTTGCCGACTCGGAACGAGCTGTGTTGGAGTATATGGAGAAGAAGAGGGAGCAGTTGGAGACGTTCCCGGTGCCAACGACCAAGGAGGGAGTGAAAGCGCAGTTGCAGGTACGCTATGGGGTCCAAGTAAAGGGGTGGGGTGCCCATAATGGAGGCTTTGGGTTCCCGATGATGGGGTCTTTGGGGTCCCGATGATGGGGACCTTTGGGGTCCCGATGATGGGGACCTTTGAGTTCCCATAATGGGTACAGTGGTASGTAGGAATGGGGTTACCAAAATAGGGACCGGGTCCCCATAATAGAGATTGCAGAATCCGTATGATGGCGACAGTTGCAGTTAGGCATGGGTACCCCATAATGGGGTATTCGGGTTCCCGATAATGGGGGCATGGGGTCAGTTGGTAGTAGGGATAGGGCCCCCATAATAGAGATAGCAGGGGTACCCATAATGGGGACAATTGCAAGTTGGTATGGGGTGCCGATAATGGGGAGTTTGGGGCCCCGATAATAGGGATATAGGAGTTCCCATAATGGGGGATTTCAGGGACCCCATAATGGAGATTGCGGGGTTCCCATAATGGAAACAGTTGCAAGTAGATATGGGGCCCGATAATGGGGACATTGGGGTTCCCATAGTGGTGACAGTTGCAGCTAGGTATGGGGTCGCCATAATGGGGGCACTTGTAGTTAGGTACCCATAATGGGGGCCATATTATCCATAATTGGGATTGCATGGGGTATTTGGGATTCCGATAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTATGGGGTCCAAGTAAAG</pcr_primer_p1>
		<pcr_primer_p2>TACGGATTCTGCAATCTCTATTA</pcr_primer_p2>
		<pcr_amplicon_size>206</pcr_amplicon_size>
		<canonical_amplicon>GCTATGGGGTCCAAGTAAAGGGGTGGGGTGCCCATAATGGAGGCTTTGGGTTCCCGATGATGGGGTCTTTGGGGTCCCGATGATGGGGACCTTTGGGGTCCCGATGATGGGGACCTTTGAGTTCCCATAATGGGTACAGTGGTAGGTAGGAATGGGGTTACCAAAATAGGGACCGGGTCCCCATAATAGAGATTGCAGAATCCGTA</canonical_amplicon>
		<polymorphic_amplicon>GCTATGGGGTCCAAGTAAAGGGGTGGGGTGCCCATAATGGAGGCTTTGGGTTCCCGATGATGGGGTCTTTGGGGTCCCGATGATGGGGACCTTTGGGGTCCCGATGATGGGGACCTTTGAGTTCCCATAATGGGTACAGTGGTASGTAGGAATGGGGTTACCAAAATAGGGACCGGGTCCCCATAATAGAGATTGCAGAATCCGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33651</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>358390</contig_pos>
        <strand>+</strand>
        <context>ACCCCATAAT[A/G]GGGTATTCGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAATCCGTATGATGGCGACAGTTGCAGTTAGGCATGGGTACCCCATAAT</left_flank>
        <right_flank>GGGTATTCGGGTTCCCGATAATGGGGGCATGGGGTCAGTTGGTAGTAGGG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGGCGTTGGCAGCGAAGATGGAGGATGGGAAGGGTACATCCAGACAGATTTCTGAACTCGGAGCACGACTTCAACGACAGACCTCGGAGCTCAAGGCACGAGGAGATCGGATCAATAAGCTCGATGGGAAGGCAACTGCTTTTGCCGACTCGGAACGAGCTGTGTTGGAGTATATGGAGAAGAAGAGGGAGCAGTTGGAGACGTTCCCGGTGCCAACGACCAAGGAGGGAGTGAAAGCGCAGTTGCAGGTACGCTATGGGGTCCAAGTAAAGGGGTGGGGTGCCCATAATGGAGGCTTTGGGTTCCCGATGATGGGGTCTTTGGGGTCCCGATGATGGGGACCTTTGGGGTCCCGATGATGGGGACCTTTGAGTTCCCATAATGGGTACAGTGGTAGGTAGGAATGGGGTTACCAAAATAGGGACCGGGTCCCCATAATAGAGATTGCAGAATCCGTATGATGGCGACAGTTGCAGTTAGGCATGGGTACCCCATAATGGGGTATTCGGGTTCCCGATAATGGGGGCATGGGGTCAGTTGGTAGTAGGGATAGGGCCCCCATAATAGAGATAGCAGGGGTACCCATAATGGGGACAATTGCAAGTTGGTATGGGGTGCCGATAATGGGGAGTTTGGGGCCCCGATAATAGGGATATAGGAGTTCCCATAATGGGGGATTTCAGGGACCCCATAATGGAGATTGCGGGGTTCCCATAATGGAAACAGTTGCAAGTAGATATGGGGCCCGATAATGGGGACATTGGGGTTCCCATAGTGGTGACAGTTGCAGCTAGGTATGGGGTCGCCATAATGGGGGCACTTGTAGTTAGGTACCCATAATGGGGGCCATATTATCCATAATTGGGATTGCATGGGGTATTTGGGATTCCGATAATGGGGACTTTGGGCTCCTGATAATAAGGATTTTGGGCTCCCAATAACGGGAATTTCGAGATACCCATTATGGGGATGATGGGGTCCCGATAACGAAGAATATAA</canonical>
            <polymorphic>GAGGCGTTGGCAGCGAAGATGGAGGATGGGAAGGGTACATCCAGACAGATTTCTGAACTCGGAGCACGACTTCAACGACAGACCTCGGAGCTCAAGGCACGAGGAGATCGGATCAATAAGCTCGATGGGAAGGCAACTGCTTTTGCCGACTCGGAACGAGCTGTGTTGGAGTATATGGAGAAGAAGAGGGAGCAGTTGGAGACGTTCCCGGTGCCAACGACCAAGGAGGGAGTGAAAGCGCAGTTGCAGGTACGCTATGGGGTCCAAGTAAAGGGGTGGGGTGCCCATAATGGAGGCTTTGGGTTCCCGATGATGGGGTCTTTGGGGTCCCGATGATGGGGACCTTTGGGGTCCCGATGATGGGGACCTTTGAGTTCCCATAATGGGTACAGTGGTAGGTAGGAATGGGGTTACCAAAATAGGGACCGGGTCCCCATAATAGAGATTGCAGAATCCGTATGATGGCGACAGTTGCAGTTAGGCATGGGTACCCCATAATRGGGTATTCGGGTTCCCGATAATGGGGGCATGGGGTCAGTTGGTAGTAGGGATAGGGCCCCCATAATAGAGATAGCAGGGGTACCCATAATGGGGACAATTGCAAGTTGGTATGGGGTGCCGATAATGGGGAGTTTGGGGCCCCGATAATAGGGATATAGGAGTTCCCATAATGGGGGATTTCAGGGACCCCATAATGGAGATTGCGGGGTTCCCATAATGGAAACAGTTGCAAGTAGATATGGGGCCCGATAATGGGGACATTGGGGTTCCCATAGTGGTGACAGTTGCAGCTAGGTATGGGGTCGCCATAATGGGGGCACTTGTAGTTAGGTACCCATAATGGGGGCCATATTATCCATAATTGGGATTGCATGGGGTATTTGGGATTCCGATAATGGGGACTTTGGGCTCCTGATAATAAGGATTTTGGGCTCCCAATAACGGGAATTTCGAGATACCCATTATGGGGATGATGGGGTCCCGATAACGAAGAATATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>270 69 61 58 45 42 41 37 36 36 35 33 28 24 24 24 23 23 23 23 23 22</canonical_bands>
                <polymorphic_bands>270 69 61 58 45 42 41 37 37 36 35 33 28 24 24 24 23 23 23 23 22 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCATAATAGAGATTGCAGAA</pcr_primer_p1>
		<pcr_primer_p2>CATTATGGGAACTCCTATATCC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CCCATAATAGAGATTGCAGAATCCGTATGATGGCGACAGTTGCAGTTAGGCATGGGTACCCCATAATGGGGTATTCGGGTTCCCGATAATGGGGGCATGGGGTCAGTTGGTAGTAGGGATAGGGCCCCCATAATAGAGATAGCAGGGGTACCCATAATGGGGACAATTGCAAGTTGGTATGGGGTGCCGATAATGGGGAGTTTGGGGCCCCGATAATAGGGATATAGGAGTTCCCATAATG</canonical_amplicon>
		<polymorphic_amplicon>CCCATAATAGAGATTGCAGAATCCGTATGATGGCGACAGTTGCAGTTAGGCATGGGTACCCCATAATRGGGTATTCGGGTTCCCGATAATGGGGGCATGGGGTCAGTTGGTAGTAGGGATAGGGCCCCCATAATAGAGATAGCAGGGGTACCCATAATGGGGACAATTGCAAGTTGGTATGGGGTGCCGATAATGGGGAGTTTGGGGCCCCGATAATAGGGATATAGGAGTTCCCATAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33652</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>358458</contig_pos>
        <strand>+</strand>
        <context>YCCCATAATA[C/G]AGATAGCASG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATAATGGGGGCATGGGGTCAGTTGGTAGTAGGGATAGGGCCCCCATAATA</left_flank>
        <right_flank>AGATAGCAGGGGTACCCATAATGGGGACAATTGCAAGTTGGTATGGGGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTCAACGACAGACCTCGGAGCTCAAGGCACGAGGAGATCGGATCAATAAGCTCGATGGGAAGGCAACTGCTTTTGCCGACTCGGAACGAGCTGTGTTGGAGTATATGGAGAAGAAGAGGGAGCAGTTGGAGACGTTCCCGGTGCCAACGACCAAGGAGGGAGTGAAAGCGCAGTTGCAGGTACGCTATGGGGTCCAAGTAAAGGGGTGGGGTGCCCATAATGGAGGCTTTGGGTTCCCGATGATGGGGTCTTTGGGGTCCCGATGATGGGGACCTTTGGGGTCCCGATGATGGGGACCTTTGAGTTCCCATAATGGGTACAGTGGTAGGTAGGAATGGGGTTACCAAAATAGGGACCGGGTCCCCATAATAGAGATTGCAGAATCCGTATGATGGCGACAGTTGCAGTTAGGCATGGGTACCCCATAATGGGGTATTCGGGTTCCCGATAATGGGGGCATGGGGTCAGTTGGTAGTAGGGATAGGGCCCCCATAATAGAGATAGCAGGGGTACCCATAATGGGGACAATTGCAAGTTGGTATGGGGTGCCGATAATGGGGAGTTTGGGGCCCCGATAATAGGGATATAGGAGTTCCCATAATGGGGGATTTCAGGGACCCCATAATGGAGATTGCGGGGTTCCCATAATGGAAACAGTTGCAAGTAGATATGGGGCCCGATAATGGGGACATTGGGGTTCCCATAGTGGTGACAGTTGCAGCTAGGTATGGGGTCGCCATAATGGGGGCACTTGTAGTTAGGTACCCATAATGGGGGCCATATTATCCATAATTGGGATTGCATGGGGTATTTGGGATTCCGATAATGGGGACTTTGGGCTCCTGATAATAAGGATTTTGGGCTCCCAATAACGGGAATTTCGAGATACCCATTATGGGGATGATGGGGTCCCGATAACGAAGAATATAAGGTTCCCATAATAAGGGATGGGTCCCCCATAATGGTGATGGCAATGTACCCATAATTGCCGAAAGTTG</canonical>
            <polymorphic>ACTTCAACGACAGACCTCGGAGCTCAAGGCACGAGGAGATCGGATCAATAAGCTCGATGGGAAGGCAACTGCTTTTGCCGACTCGGAACGAGCTGTGTTGGAGTATATGGAGAAGAAGAGGGAGCAGTTGGAGACGTTCCCGGTGCCAACGACCAAGGAGGGAGTGAAAGCGCAGTTGCAGGTACGCTATGGGGTCCAAGTAAAGGGGTGGGGTGCCCATAATGGAGGCTTTGGGTTCCCGATGATGGGGTCTTTGGGGTCCCGATGATGGGGACCTTTGGGGTCCCGATGATGGGGACCTTTGAGTTCCCATAATGGGTACAGTGGTAGGTAGGAATGGGGTTACCAAAATAGGGACCGGGTCCCCATAATAGAGATTGCAGAATCCGTATGATGGCGACAGTTGCAGTTAGGCATGGGTACCCCATAATGGGGTATTCGGGTTCCCGATAATGGGGGCATGGGGTCAGTTGGTAGTAGGGATAGGGCCCCCATAATASAGATAGCAGGGGTACCCATAATGGGGACAATTGCAAGTTGGTATGGGGTGCCGATAATGGGGAGTTTGGGGCCCCGATAATAGGGATATAGGAGTTCCCATAATGGGGGATTTCAGGGACCCCATAATGGAGATTGCGGGGTTCCCATAATGGAAACAGTTGCAAGTAGATATGGGGCCCGATAATGGGGACATTGGGGTTCCCATAGTGGTGACAGTTGCAGCTAGGTATGGGGTCGCCATAATGGGGGCACTTGTAGTTAGGTACCCATAATGGGGGCCATATTATCCATAATTGGGATTGCATGGGGTATTTGGGATTCCGATAATGGGGACTTTGGGCTCCTGATAATAAGGATTTTGGGCTCCCAATAACGGGAATTTCGAGATACCCATTATGGGGATGATGGGGTCCCGATAACGAAGAATATAAGGTTCCCATAATAAGGGATGGGTCCCCCATAATGGTGATGGCAATGTACCCATAATTGCCGAAAGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCATAATAGAGATTGCAGAA</pcr_primer_p1>
		<pcr_primer_p2>CATTATGGGAACTCCTATATCC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CCCATAATAGAGATTGCAGAATCCGTATGATGGCGACAGTTGCAGTTAGGCATGGGTACCCCATAATGGGGTATTCGGGTTCCCGATAATGGGGGCATGGGGTCAGTTGGTAGTAGGGATAGGGCCCCCATAATAGAGATAGCAGGGGTACCCATAATGGGGACAATTGCAAGTTGGTATGGGGTGCCGATAATGGGGAGTTTGGGGCCCCGATAATAGGGATATAGGAGTTCCCATAATG</canonical_amplicon>
		<polymorphic_amplicon>CCCATAATAGAGATTGCAGAATCCGTATGATGGCGACAGTTGCAGTTAGGCATGGGTACCCCATAATGGGGTATTCGGGTTCCCGATAATGGGGGCATGGGGTCAGTTGGTAGTAGGGATAGGGCCCCCATAATASAGATAGCAGGGGTACCCATAATGGGGACAATTGCAAGTTGGTATGGGGTGCCGATAATGGGGAGTTTGGGGCCCCGATAATAGGGATATAGGAGTTCCCATAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33653</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>358467</contig_pos>
        <strand>+</strand>
        <context>ASAGATAGCA[C/G]GGGTACCCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCATGGGGTCAGTTGGTAGTAGGGATAGGGCCCCCATAATAGAGATAGCA</left_flank>
        <right_flank>GGGTACCCATAATGGGGACAATTGCAAGTTGGTATGGGGTGCCGATAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGACCTCGGAGCTCAAGGCACGAGGAGATCGGATCAATAAGCTCGATGGGAAGGCAACTGCTTTTGCCGACTCGGAACGAGCTGTGTTGGAGTATATGGAGAAGAAGAGGGAGCAGTTGGAGACGTTCCCGGTGCCAACGACCAAGGAGGGAGTGAAAGCGCAGTTGCAGGTACGCTATGGGGTCCAAGTAAAGGGGTGGGGTGCCCATAATGGAGGCTTTGGGTTCCCGATGATGGGGTCTTTGGGGTCCCGATGATGGGGACCTTTGGGGTCCCGATGATGGGGACCTTTGAGTTCCCATAATGGGTACAGTGGTAGGTAGGAATGGGGTTACCAAAATAGGGACCGGGTCCCCATAATAGAGATTGCAGAATCCGTATGATGGCGACAGTTGCAGTTAGGCATGGGTACCCCATAATGGGGTATTCGGGTTCCCGATAATGGGGGCATGGGGTCAGTTGGTAGTAGGGATAGGGCCCCCATAATAGAGATAGCAGGGGTACCCATAATGGGGACAATTGCAAGTTGGTATGGGGTGCCGATAATGGGGAGTTTGGGGCCCCGATAATAGGGATATAGGAGTTCCCATAATGGGGGATTTCAGGGACCCCATAATGGAGATTGCGGGGTTCCCATAATGGAAACAGTTGCAAGTAGATATGGGGCCCGATAATGGGGACATTGGGGTTCCCATAGTGGTGACAGTTGCAGCTAGGTATGGGGTCGCCATAATGGGGGCACTTGTAGTTAGGTACCCATAATGGGGGCCATATTATCCATAATTGGGATTGCATGGGGTATTTGGGATTCCGATAATGGGGACTTTGGGCTCCTGATAATAAGGATTTTGGGCTCCCAATAACGGGAATTTCGAGATACCCATTATGGGGATGATGGGGTCCCGATAACGAAGAATATAAGGTTCCCATAATAAGGGATGGGTCCCCCATAATGGTGATGGCAATGTACCCATAATTGCCGAAAGTTGCAGGTAGGT</canonical>
            <polymorphic>ACAGACCTCGGAGCTCAAGGCACGAGGAGATCGGATCAATAAGCTCGATGGGAAGGCAACTGCTTTTGCCGACTCGGAACGAGCTGTGTTGGAGTATATGGAGAAGAAGAGGGAGCAGTTGGAGACGTTCCCGGTGCCAACGACCAAGGAGGGAGTGAAAGCGCAGTTGCAGGTACGCTATGGGGTCCAAGTAAAGGGGTGGGGTGCCCATAATGGAGGCTTTGGGTTCCCGATGATGGGGTCTTTGGGGTCCCGATGATGGGGACCTTTGGGGTCCCGATGATGGGGACCTTTGAGTTCCCATAATGGGTACAGTGGTAGGTAGGAATGGGGTTACCAAAATAGGGACCGGGTCCCCATAATAGAGATTGCAGAATCCGTATGATGGCGACAGTTGCAGTTAGGCATGGGTACCCCATAATGGGGTATTCGGGTTCCCGATAATGGGGGCATGGGGTCAGTTGGTAGTAGGGATAGGGCCCCCATAATAGAGATAGCASGGGTACCCATAATGGGGACAATTGCAAGTTGGTATGGGGTGCCGATAATGGGGAGTTTGGGGCCCCGATAATAGGGATATAGGAGTTCCCATAATGGGGGATTTCAGGGACCCCATAATGGAGATTGCGGGGTTCCCATAATGGAAACAGTTGCAAGTAGATATGGGGCCCGATAATGGGGACATTGGGGTTCCCATAGTGGTGACAGTTGCAGCTAGGTATGGGGTCGCCATAATGGGGGCACTTGTAGTTAGGTACCCATAATGGGGGCCATATTATCCATAATTGGGATTGCATGGGGTATTTGGGATTCCGATAATGGGGACTTTGGGCTCCTGATAATAAGGATTTTGGGCTCCCAATAACGGGAATTTCGAGATACCCATTATGGGGATGATGGGGTCCCGATAACGAAGAATATAAGGTTCCCATAATAAGGGATGGGTCCCCCATAATGGTGATGGCAATGTACCCATAATTGCCGAAAGTTGCAGGTAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCATAATAGAGATTGCAGAA</pcr_primer_p1>
		<pcr_primer_p2>CATTATGGGAACTCCTATATCC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CCCATAATAGAGATTGCAGAATCCGTATGATGGCGACAGTTGCAGTTAGGCATGGGTACCCCATAATGGGGTATTCGGGTTCCCGATAATGGGGGCATGGGGTCAGTTGGTAGTAGGGATAGGGCCCCCATAATAGAGATAGCAGGGGTACCCATAATGGGGACAATTGCAAGTTGGTATGGGGTGCCGATAATGGGGAGTTTGGGGCCCCGATAATAGGGATATAGGAGTTCCCATAATG</canonical_amplicon>
		<polymorphic_amplicon>CCCATAATAGAGATTGCAGAATCCGTATGATGGCGACAGTTGCAGTTAGGCATGGGTACCCCATAATGGGGTATTCGGGTTCCCGATAATGGGGGCATGGGGTCAGTTGGTAGTAGGGATAGGGCCCCCATAATAGAGATAGCASGGGTACCCATAATGGGGACAATTGCAAGTTGGTATGGGGTGCCGATAATGGGGAGTTTGGGGCCCCGATAATAGGGATATAGGAGTTCCCATAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33654</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>360780</contig_pos>
        <strand>+</strand>
        <context>TGGAGAGCAC[A/G]CAGAAGAAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGTGGACTCAACGAATCGAGCAGAGATTCAGGAGCAGCTGGAGAGCAC</left_flank>
        <right_flank>CAGAAGAAGGCTGATGAGCTGGAGAGGAAGATTGAGTCAGTGAAGAGAGC</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACACTGAAGGCTAGGATTCTCTGGGATTACTGTAGTGTTGATTTGGGGTTCAAACCACTTGGATTACTGTAGTTTGATTGCTCAGTTAGGATTTTCTGGGATTACTCGCGTCAAAACGACTCTCAAACTAGTTACGATTATTTGGGAGTACTGTAGTTTTATGACCACTGCTCATTCCCAGATTTGTAGTACAGTGTCCGAGGATTAGGTTACTGTAGTTTTGATTCTGGTAGGATTACTGTAGCCTAATTGCGCACCCAAAAGAAATGTTTTTTTTTTCAGAAAAGAGCTCTCCGAACTGGAATCGAACGTCGAGAAGGCATCCCGAATGTCCCCCAACGACATTGGAGACCAACTGGCCACTCTCGACTCCCTGAAATCCCGTTTTGGAGGTGTTGATGCGGCACTGGAGAAGCTGAAGACGATTCTAGAAGCCACCGATGATCTAGAAGTGGACTCAACGAATCGAGCAGAGATTCAGGAGCAGCTGGAGAGCACGCAGAAGAAGGCTGATGAGCTGGAGAGGAAGATTGAGTCAGTGAAGAGAGCAGCACTGAACGCTCAGAATGAAGGCGTCGAGTTGGAGAAGAGACTGGACGATTTGATTGGAATTGTGGCACAGGCGGAGAATGAGCTGGAGCAGGCTGCTCCAATTGCAGCCGACTCGCAGAAGCTACACGAGGAGCTCAAGAGAGCTGACGACGTGTTCCAGAAGCTCTTGGAGAACGAAGGAGAGGTGTCACTGATAAGAGCGAAGGTTGCAGAGGAGTTGAAGAAGAAGCCGGATGTGGAGCTGAAGAAGAAGGTGGAGATGTTGAATTCAAAATGGCCCAAGGCTCTGGGAGCAGCTAGAGATCGAAAGGATTTGGTGACGAAGGCTGGAGACTTGGTGAAGCTCTTCGGAGAGTCAGAAGGAGCTCTCGAGCAGAGACTCCAAGGAGATCAGAGTGGTTTGGAGGAGCTATTGGATAGAATTCAGGATCCTGAAGCGCTGGACGC</canonical>
            <polymorphic>GACACTGAAGGCTAGGATTCTCTGGGATTACTGTAGTGTTGATTTGGGGTTCAAACCACTTGGATTACTGTAGTTTGATTGCTCAGTTAGGATTTTCTGGGATTACTCGCGTCAAAACGACTCTCAAACTAGTTACGATTATTTGGGAGTACTGTAGTTTTATGACCACTGCTCATTCCCAGATTTGTAGTACAGTGTCCGAGGATTAGGTTACTGTAGTTTTGATTCTGGTAGGATTACTGTAGCCTAATTGCGCACCCAAAAGAAATGTTTTTTTTTTCAGAAAAGAGCTCTCCGAACTGGAATCGAACGTCGAGAAGGCATCCCGAATGTCCCCCAACGACATTGGAGACCAACTGGCCACTCTCGACTCCCTGAAATCCCGTTTTGGAGGTGTTGATGCGGCACTGGAGAAGCTGAAGACGATTCTAGAAGCCACCGATGATCTAGAAGTGGACTCAACGAATCGAGCAGAGATTCAGGAGCAGCTGGAGAGCACRCAGAAGAAGGCTGATGAGCTGGAGAGGAAGATTGAGTCAGTGAAGAGAGCAGCACTGAACGCTCAGAATGAAGGCGTCGAGTTGGAGAAGAGACTGGACGATTTGATTGGAATTGTGGCACAGGCGGAGAATGAGCTGGAGCAGGCTGCTCCAATTGCAGCCGACTCGCAGAAGCTACACGAGGAGCTCAAGAGAGCTGACGACGTGTTCCAGAAGCTCTTGGAGAACGAAGGAGAGGTGTCACTGATAAGAGCGAAGGTTGCAGAGGAGTTGAAGAAGAAGCCGGATGTGGAGCTGAAGAAGAAGGTGGAGATGTTGAATTCAAAATGGCCCAAGGCTCTGGGAGCAGCTAGAGATCGAAAGGATTTGGTGACGAAGGCTGGAGACTTGGTGAAGCTCTTCGGAGAGTCAGAAGGAGCTCTCGAGCAGAGACTCCAAGGAGATCAGAGTGGTTTGGAGGAGCTATTGGATAGAATTCAGGATCCTGAAGCGCTGGACGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 357 145</canonical_bands>
                <polymorphic_bands>643 357</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCTCGACTCCCTGAAATC</pcr_primer_p1>
		<pcr_primer_p2>AATCAAATCGTCCAGTCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACTCTCGACTCCCTGAAATCCCGTTTTGGAGGTGTTGATGCGGCACTGGAGAAGCTGAAGACGATTCTAGAAGCCACCGATGATCTAGAAGTGGACTCAACGAATCGAGCAGAGATTCAGGAGCAGCTGGAGAGCACGCAGAAGAAGGCTGATGAGCTGGAGAGGAAGATTGAGTCAGTGAAGAGAGCAGCACTGAACGCTCAGAATGAAGGCGTCGAGTTGGAGAAGAGACTGGACGATTTGATT</canonical_amplicon>
		<polymorphic_amplicon>ACTCTCGACTCCCTGAAATCCCGTTTTGGAGGTGTTGATGCGGCACTGGAGAAGCTGAAGACGATTCTAGAAGCCACCGATGATCTAGAAGTGGACTCAACGAATCGAGCAGAGATTCAGGAGCAGCTGGAGAGCACRCAGAAGAAGGCTGATGAGCTGGAGAGGAAGATTGAGTCAGTGAAGAGAGCAGCACTGAACGCTCAGAATGAAGGCGTCGAGTTGGAGAAGAGACTGGACGATTTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33655</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>360835</contig_pos>
        <strand>+</strand>
        <context>GAGAGCAGCA[C/T]TGAACGCTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAGGCTGATGAGCTGGAGAGGAAGATTGAGTCAGTGAAGAGAGCAGCA</left_flank>
        <right_flank>TGAACGCTCAGAATGAAGGCGTCGAGTTGGAGAAGAGACTGGACGATTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCACTTGGATTACTGTAGTTTGATTGCTCAGTTAGGATTTTCTGGGATTACTCGCGTCAAAACGACTCTCAAACTAGTTACGATTATTTGGGAGTACTGTAGTTTTATGACCACTGCTCATTCCCAGATTTGTAGTACAGTGTCCGAGGATTAGGTTACTGTAGTTTTGATTCTGGTAGGATTACTGTAGCCTAATTGCGCACCCAAAAGAAATGTTTTTTTTTTCAGAAAAGAGCTCTCCGAACTGGAATCGAACGTCGAGAAGGCATCCCGAATGTCCCCCAACGACATTGGAGACCAACTGGCCACTCTCGACTCCCTGAAATCCCGTTTTGGAGGTGTTGATGCGGCACTGGAGAAGCTGAAGACGATTCTAGAAGCCACCGATGATCTAGAAGTGGACTCAACGAATCGAGCAGAGATTCAGGAGCAGCTGGAGAGCACGCAGAAGAAGGCTGATGAGCTGGAGAGGAAGATTGAGTCAGTGAAGAGAGCAGCACTGAACGCTCAGAATGAAGGCGTCGAGTTGGAGAAGAGACTGGACGATTTGATTGGAATTGTGGCACAGGCGGAGAATGAGCTGGAGCAGGCTGCTCCAATTGCAGCCGACTCGCAGAAGCTACACGAGGAGCTCAAGAGAGCTGACGACGTGTTCCAGAAGCTCTTGGAGAACGAAGGAGAGGTGTCACTGATAAGAGCGAAGGTTGCAGAGGAGTTGAAGAAGAAGCCGGATGTGGAGCTGAAGAAGAAGGTGGAGATGTTGAATTCAAAATGGCCCAAGGCTCTGGGAGCAGCTAGAGATCGAAAGGATTTGGTGACGAAGGCTGGAGACTTGGTGAAGCTCTTCGGAGAGTCAGAAGGAGCTCTCGAGCAGAGACTCCAAGGAGATCAGAGTGGTTTGGAGGAGCTATTGGATAGAATTCAGGATCCTGAAGCGCTGGACGCTCTGAAGCTGGTGGAGAAGACGATGGATAGAAGACTCGCCGACGTGGATTCGTTG</canonical>
            <polymorphic>CCACTTGGATTACTGTAGTTTGATTGCTCAGTTAGGATTTTCTGGGATTACTCGCGTCAAAACGACTCTCAAACTAGTTACGATTATTTGGGAGTACTGTAGTTTTATGACCACTGCTCATTCCCAGATTTGTAGTACAGTGTCCGAGGATTAGGTTACTGTAGTTTTGATTCTGGTAGGATTACTGTAGCCTAATTGCGCACCCAAAAGAAATGTTTTTTTTTTCAGAAAAGAGCTCTCCGAACTGGAATCGAACGTCGAGAAGGCATCCCGAATGTCCCCCAACGACATTGGAGACCAACTGGCCACTCTCGACTCCCTGAAATCCCGTTTTGGAGGTGTTGATGCGGCACTGGAGAAGCTGAAGACGATTCTAGAAGCCACCGATGATCTAGAAGTGGACTCAACGAATCGAGCAGAGATTCAGGAGCAGCTGGAGAGCACGCAGAAGAAGGCTGATGAGCTGGAGAGGAAGATTGAGTCAGTGAAGAGAGCAGCAYTGAACGCTCAGAATGAAGGCGTCGAGTTGGAGAAGAGACTGGACGATTTGATTGGAATTGTGGCACAGGCGGAGAATGAGCTGGAGCAGGCTGCTCCAATTGCAGCCGACTCGCAGAAGCTACACGAGGAGCTCAAGAGAGCTGACGACGTGTTCCAGAAGCTCTTGGAGAACGAAGGAGAGGTGTCACTGATAAGAGCGAAGGTTGCAGAGGAGTTGAAGAAGAAGCCGGATGTGGAGCTGAAGAAGAAGGTGGAGATGTTGAATTCAAAATGGCCCAAGGCTCTGGGAGCAGCTAGAGATCGAAAGGATTTGGTGACGAAGGCTGGAGACTTGGTGAAGCTCTTCGGAGAGTCAGAAGGAGCTCTCGAGCAGAGACTCCAAGGAGATCAGAGTGGTTTGGAGGAGCTATTGGATAGAATTCAGGATCCTGAAGCGCTGGACGCTCTGAAGCTGGTGGAGAAGACGATGGATAGAAGACTCGCCGACGTGGATTCGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>110 106 63 63 62 60 59 58 48 44 43 33 33 33 31 29 28 21 18 17 12 11 9 3 3 3</canonical_bands>
                <polymorphic_bands>110 106 75 63 62 60 59 58 48 44 43 33 33 33 31 29 28 21 18 17 11 9 3 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCTCGACTCCCTGAAATC</pcr_primer_p1>
		<pcr_primer_p2>AATCAAATCGTCCAGTCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACTCTCGACTCCCTGAAATCCCGTTTTGGAGGTGTTGATGCGGCACTGGAGAAGCTGAAGACGATTCTAGAAGCCACCGATGATCTAGAAGTGGACTCAACGAATCGAGCAGAGATTCAGGAGCAGCTGGAGAGCACGCAGAAGAAGGCTGATGAGCTGGAGAGGAAGATTGAGTCAGTGAAGAGAGCAGCACTGAACGCTCAGAATGAAGGCGTCGAGTTGGAGAAGAGACTGGACGATTTGATT</canonical_amplicon>
		<polymorphic_amplicon>ACTCTCGACTCCCTGAAATCCCGTTTTGGAGGTGTTGATGCGGCACTGGAGAAGCTGAAGACGATTCTAGAAGCCACCGATGATCTAGAAGTGGACTCAACGAATCGAGCAGAGATTCAGGAGCAGCTGGAGAGCACGCAGAAGAAGGCTGATGAGCTGGAGAGGAAGATTGAGTCAGTGAAGAGAGCAGCAYTGAACGCTCAGAATGAAGGCGTCGAGTTGGAGAAGAGACTGGACGATTTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33656</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>360858</contig_pos>
        <strand>+</strand>
        <context>ATGAAGGCGT[C/T]GARTTGGAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGATTGAGTCAGTGAAGAGAGCAGCACTGAACGCTCAGAATGAAGGCGT</left_flank>
        <right_flank>GAGTTGGAGAAGAGACTGGACGATTTGATTGGAATTGTGGCACAGGCGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCTCAGTTAGGATTTTCTGGGATTACTCGCGTCAAAACGACTCTCAAACTAGTTACGATTATTTGGGAGTACTGTAGTTTTATGACCACTGCTCATTCCCAGATTTGTAGTACAGTGTCCGAGGATTAGGTTACTGTAGTTTTGATTCTGGTAGGATTACTGTAGCCTAATTGCGCACCCAAAAGAAATGTTTTTTTTTTCAGAAAAGAGCTCTCCGAACTGGAATCGAACGTCGAGAAGGCATCCCGAATGTCCCCCAACGACATTGGAGACCAACTGGCCACTCTCGACTCCCTGAAATCCCGTTTTGGAGGTGTTGATGCGGCACTGGAGAAGCTGAAGACGATTCTAGAAGCCACCGATGATCTAGAAGTGGACTCAACGAATCGAGCAGAGATTCAGGAGCAGCTGGAGAGCACGCAGAAGAAGGCTGATGAGCTGGAGAGGAAGATTGAGTCAGTGAAGAGAGCAGCACTGAACGCTCAGAATGAAGGCGTCGAGTTGGAGAAGAGACTGGACGATTTGATTGGAATTGTGGCACAGGCGGAGAATGAGCTGGAGCAGGCTGCTCCAATTGCAGCCGACTCGCAGAAGCTACACGAGGAGCTCAAGAGAGCTGACGACGTGTTCCAGAAGCTCTTGGAGAACGAAGGAGAGGTGTCACTGATAAGAGCGAAGGTTGCAGAGGAGTTGAAGAAGAAGCCGGATGTGGAGCTGAAGAAGAAGGTGGAGATGTTGAATTCAAAATGGCCCAAGGCTCTGGGAGCAGCTAGAGATCGAAAGGATTTGGTGACGAAGGCTGGAGACTTGGTGAAGCTCTTCGGAGAGTCAGAAGGAGCTCTCGAGCAGAGACTCCAAGGAGATCAGAGTGGTTTGGAGGAGCTATTGGATAGAATTCAGGATCCTGAAGCGCTGGACGCTCTGAAGCTGGTGGAGAAGACGATGGATAGAAGACTCGCCGACGTGGATTCGTTGAATTCCGTGATGGATCGAATCGA</canonical>
            <polymorphic>TTGCTCAGTTAGGATTTTCTGGGATTACTCGCGTCAAAACGACTCTCAAACTAGTTACGATTATTTGGGAGTACTGTAGTTTTATGACCACTGCTCATTCCCAGATTTGTAGTACAGTGTCCGAGGATTAGGTTACTGTAGTTTTGATTCTGGTAGGATTACTGTAGCCTAATTGCGCACCCAAAAGAAATGTTTTTTTTTTCAGAAAAGAGCTCTCCGAACTGGAATCGAACGTCGAGAAGGCATCCCGAATGTCCCCCAACGACATTGGAGACCAACTGGCCACTCTCGACTCCCTGAAATCCCGTTTTGGAGGTGTTGATGCGGCACTGGAGAAGCTGAAGACGATTCTAGAAGCCACCGATGATCTAGAAGTGGACTCAACGAATCGAGCAGAGATTCAGGAGCAGCTGGAGAGCACGCAGAAGAAGGCTGATGAGCTGGAGAGGAAGATTGAGTCAGTGAAGAGAGCAGCACTGAACGCTCAGAATGAAGGCGTYGAGTTGGAGAAGAGACTGGACGATTTGATTGGAATTGTGGCACAGGCGGAGAATGAGCTGGAGCAGGCTGCTCCAATTGCAGCCGACTCGCAGAAGCTACACGAGGAGCTCAAGAGAGCTGACGACGTGTTCCAGAAGCTCTTGGAGAACGAAGGAGAGGTGTCACTGATAAGAGCGAAGGTTGCAGAGGAGTTGAAGAAGAAGCCGGATGTGGAGCTGAAGAAGAAGGTGGAGATGTTGAATTCAAAATGGCCCAAGGCTCTGGGAGCAGCTAGAGATCGAAAGGATTTGGTGACGAAGGCTGGAGACTTGGTGAAGCTCTTCGGAGAGTCAGAAGGAGCTCTCGAGCAGAGACTCCAAGGAGATCAGAGTGGTTTGGAGGAGCTATTGGATAGAATTCAGGATCCTGAAGCGCTGGACGCTCTGAAGCTGGTGGAGAAGACGATGGATAGAAGACTCGCCGACGTGGATTCGTTGAATTCCGTGATGGATCGAATCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>280 229 148 110 100 65 54 7 5 2</canonical_bands>
                <polymorphic_bands>390 229 148 100 65 54 7 5 2</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>339 264 237 126 34</canonical_bands>
                <polymorphic_bands>390 339 237 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAGCTGGAGAGGAAGATT</pcr_primer_p1>
		<pcr_primer_p2>GCTCTTATCAGTGACACCTCTC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATGAGCTGGAGAGGAAGATTGAGTCAGTGAAGAGAGCAGCACTGAACGCTCAGAATGAAGGCGTCGAGTTGGAGAAGAGACTGGACGATTTGATTGGAATTGTGGCACAGGCGGAGAATGAGCTGGAGCAGGCTGCTCCAATTGCAGCCGACTCGCAGAAGCTACACGAGGAGCTCAAGAGAGCTGACGACGTGTTCCAGAAGCTCTTGGAGAACGAAGGAGAGGTGTCACTGATAAGAGC</canonical_amplicon>
		<polymorphic_amplicon>ATGAGCTGGAGAGGAAGATTGAGTCAGTGAAGAGAGCAGCACTGAACGCTCAGAATGAAGGCGTYGAGTTGGAGAAGAGACTGGACGATTTGATTGGAATTGTGGCACAGGCGGAGAATGAGCTGGAGCAGGCTGCTCCAATTGCAGCCGACTCGCAGAAGCTACACGAGGAGCTCAAGAGAGCTGACGACGTGTTCCAGAAGCTCTTGGAGAACGAAGGAGAGGTGTCACTGATAAGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33657</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>360861</contig_pos>
        <strand>+</strand>
        <context>AAGGCGTYGA[A/G]TTGGAGAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGAGTCAGTGAAGAGAGCAGCACTGAACGCTCAGAATGAAGGCGTCGA</left_flank>
        <right_flank>TTGGAGAAGAGACTGGACGATTTGATTGGAATTGTGGCACAGGCGGAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAGTTAGGATTTTCTGGGATTACTCGCGTCAAAACGACTCTCAAACTAGTTACGATTATTTGGGAGTACTGTAGTTTTATGACCACTGCTCATTCCCAGATTTGTAGTACAGTGTCCGAGGATTAGGTTACTGTAGTTTTGATTCTGGTAGGATTACTGTAGCCTAATTGCGCACCCAAAAGAAATGTTTTTTTTTTCAGAAAAGAGCTCTCCGAACTGGAATCGAACGTCGAGAAGGCATCCCGAATGTCCCCCAACGACATTGGAGACCAACTGGCCACTCTCGACTCCCTGAAATCCCGTTTTGGAGGTGTTGATGCGGCACTGGAGAAGCTGAAGACGATTCTAGAAGCCACCGATGATCTAGAAGTGGACTCAACGAATCGAGCAGAGATTCAGGAGCAGCTGGAGAGCACGCAGAAGAAGGCTGATGAGCTGGAGAGGAAGATTGAGTCAGTGAAGAGAGCAGCACTGAACGCTCAGAATGAAGGCGTCGAGTTGGAGAAGAGACTGGACGATTTGATTGGAATTGTGGCACAGGCGGAGAATGAGCTGGAGCAGGCTGCTCCAATTGCAGCCGACTCGCAGAAGCTACACGAGGAGCTCAAGAGAGCTGACGACGTGTTCCAGAAGCTCTTGGAGAACGAAGGAGAGGTGTCACTGATAAGAGCGAAGGTTGCAGAGGAGTTGAAGAAGAAGCCGGATGTGGAGCTGAAGAAGAAGGTGGAGATGTTGAATTCAAAATGGCCCAAGGCTCTGGGAGCAGCTAGAGATCGAAAGGATTTGGTGACGAAGGCTGGAGACTTGGTGAAGCTCTTCGGAGAGTCAGAAGGAGCTCTCGAGCAGAGACTCCAAGGAGATCAGAGTGGTTTGGAGGAGCTATTGGATAGAATTCAGGATCCTGAAGCGCTGGACGCTCTGAAGCTGGTGGAGAAGACGATGGATAGAAGACTCGCCGACGTGGATTCGTTGAATTCCGTGATGGATCGAATCGAGGC</canonical>
            <polymorphic>CTCAGTTAGGATTTTCTGGGATTACTCGCGTCAAAACGACTCTCAAACTAGTTACGATTATTTGGGAGTACTGTAGTTTTATGACCACTGCTCATTCCCAGATTTGTAGTACAGTGTCCGAGGATTAGGTTACTGTAGTTTTGATTCTGGTAGGATTACTGTAGCCTAATTGCGCACCCAAAAGAAATGTTTTTTTTTTCAGAAAAGAGCTCTCCGAACTGGAATCGAACGTCGAGAAGGCATCCCGAATGTCCCCCAACGACATTGGAGACCAACTGGCCACTCTCGACTCCCTGAAATCCCGTTTTGGAGGTGTTGATGCGGCACTGGAGAAGCTGAAGACGATTCTAGAAGCCACCGATGATCTAGAAGTGGACTCAACGAATCGAGCAGAGATTCAGGAGCAGCTGGAGAGCACGCAGAAGAAGGCTGATGAGCTGGAGAGGAAGATTGAGTCAGTGAAGAGAGCAGCACTGAACGCTCAGAATGAAGGCGTCGARTTGGAGAAGAGACTGGACGATTTGATTGGAATTGTGGCACAGGCGGAGAATGAGCTGGAGCAGGCTGCTCCAATTGCAGCCGACTCGCAGAAGCTACACGAGGAGCTCAAGAGAGCTGACGACGTGTTCCAGAAGCTCTTGGAGAACGAAGGAGAGGTGTCACTGATAAGAGCGAAGGTTGCAGAGGAGTTGAAGAAGAAGCCGGATGTGGAGCTGAAGAAGAAGGTGGAGATGTTGAATTCAAAATGGCCCAAGGCTCTGGGAGCAGCTAGAGATCGAAAGGATTTGGTGACGAAGGCTGGAGACTTGGTGAAGCTCTTCGGAGAGTCAGAAGGAGCTCTCGAGCAGAGACTCCAAGGAGATCAGAGTGGTTTGGAGGAGCTATTGGATAGAATTCAGGATCCTGAAGCGCTGGACGCTCTGAAGCTGGTGGAGAAGACGATGGATAGAAGACTCGCCGACGTGGATTCGTTGAATTCCGTGATGGATCGAATCGAGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAGCTGGAGAGGAAGATT</pcr_primer_p1>
		<pcr_primer_p2>GCTCTTATCAGTGACACCTCTC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATGAGCTGGAGAGGAAGATTGAGTCAGTGAAGAGAGCAGCACTGAACGCTCAGAATGAAGGCGTCGAGTTGGAGAAGAGACTGGACGATTTGATTGGAATTGTGGCACAGGCGGAGAATGAGCTGGAGCAGGCTGCTCCAATTGCAGCCGACTCGCAGAAGCTACACGAGGAGCTCAAGAGAGCTGACGACGTGTTCCAGAAGCTCTTGGAGAACGAAGGAGAGGTGTCACTGATAAGAGC</canonical_amplicon>
		<polymorphic_amplicon>ATGAGCTGGAGAGGAAGATTGAGTCAGTGAAGAGAGCAGCACTGAACGCTCAGAATGAAGGCGTCGARTTGGAGAAGAGACTGGACGATTTGATTGGAATTGTGGCACAGGCGGAGAATGAGCTGGAGCAGGCTGCTCCAATTGCAGCCGACTCGCAGAAGCTACACGAGGAGCTCAAGAGAGCTGACGACGTGTTCCAGAAGCTCTTGGAGAACGAAGGAGAGGTGTCACTGATAAGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33658</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>369198</contig_pos>
        <strand>+</strand>
        <context>GACAGTTCTA[A/G]ACAATCTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGGTTACTGTAGCCTTGGAGTCTCGGTGGTGGACCTGTGGACAGTTCTA</left_flank>
        <right_flank>ACAATCTTTGAGATTGGGATTACTGTAGCTAGGAGGTAACCTAGATTTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAGGCTGTAATTGAGAATCAGGTGGCAAACGTCCGAGGTGGATTCTCCACGATCACTGGTCTGTTCGCCGAAAAGAAGAGAGATCTGATTGCGGCGATGGAAGAGGCGATGGCATTCCATGGAGACTTGGAAGCACTCATGAAGTGGTTGGATAAGGCTGAGCAACGAATGGCCAAGATGGCGCCGGTTGAGCAGGCGAAACAGATGAACGAGATTGGACAGTTGTTGGATGAGTTGCATAGGTTAGTGGTTGGGGGAGGCTTCGGGAGGGTTACTGTAGCTTCAGATGGTCGATTGTCTAAAAAGCAAAGGCTAGAAGAGATTAATGTACCTTCAGAGGAGGGTTGATATCTAGAGAATTGAATTCTGGAGATTGAGAATACTGTAGCTAGGAAGAAATAATGATTTTGGCTAGATAAACCTGCCCTAAGTTTCTGTACCATAGCCTGGGTTACTGTAGCCTTGGAGTCTCGGTGGTGGACCTGTGGACAGTTCTAGACAATCTTTGAGATTGGGATTACTGTAGCTAGGAGGTAACCTAGATTTCGTTGCAAGGTTACTGTAGGGATACTTTACTCCAGGCGAGTTTAGGACGGCTTGTGAAAACTGAAACAGGAGGATTCTGAATGATTTTAGAAGATTCTAGAAGATCCTGAATGACTCGTGAAAGGCTTCTAGAGGATTATAAACGATTCTAGACGATTCGAGAGGATTCTAGAGGATTCTAGAGGGTTCTAGAACATCCCAGAGGAGCATTTTAGAGGAATCTAGAGGATTCTGAAGAATTCTAGACGATCCGAGACGACGCACAGACAGTTTTCAGAACTCCTAATTTCCGTATTTGTTGCAGATTCAAAGACGAAGTTGACGAACGAGGTGTCGCCAAAGAGCAAGTCGTCACGACGGCTCTCCAACTCGCCGCCGACGCTCCGCCCCATTTGGCAGCTACAGTAAGACAACCGGTGGCCGAGCTGAACGGACGATGGACCCGACTGAAT</canonical>
            <polymorphic>AGAAGGCTGTAATTGAGAATCAGGTGGCAAACGTCCGAGGTGGATTCTCCACGATCACTGGTCTGTTCGCCGAAAAGAAGAGAGATCTGATTGCGGCGATGGAAGAGGCGATGGCATTCCATGGAGACTTGGAAGCACTCATGAAGTGGTTGGATAAGGCTGAGCAACGAATGGCCAAGATGGCGCCGGTTGAGCAGGCGAAACAGATGAACGAGATTGGACAGTTGTTGGATGAGTTGCATAGGTTAGTGGTTGGGGGAGGCTTCGGGAGGGTTACTGTAGCTTCAGATGGTCGATTGTCTAAAAAGCAAAGGCTAGAAGAGATTAATGTACCTTCAGAGGAGGGTTGATATCTAGAGAATTGAATTCTGGAGATTGAGAATACTGTAGCTAGGAAGAAATAATGATTTTGGCTAGATAAACCTGCCCTAAGTTTCTGTACCATAGCCTGGGTTACTGTAGCCTTGGAGTCTCGGTGGTGGACCTGTGGACAGTTCTARACAATCTTTGAGATTGGGATTACTGTAGCTAGGAGGTAACCTAGATTTCGTTGCAAGGTTACTGTAGGGATACTTTACTCCAGGCGAGTTTAGGACGGCTTGTGAAAACTGAAACAGGAGGATTCTGAATGATTTTAGAAGATTCTAGAAGATCCTGAATGACTCGTGAAAGGCTTCTAGAGGATTATAAACGATTCTAGACGATTCGAGAGGATTCTAGAGGATTCTAGAGGGTTCTAGAACATCCCAGAGGAGCATTTTAGAGGAATCTAGAGGATTCTGAAGAATTCTAGACGATCCGAGACGACGCACAGACAGTTTTCAGAACTCCTAATTTCCGTATTTGTTGCAGATTCAAAGACGAAGTTGACGAACGAGGTGTCGCCAAAGAGCAAGTCGTCACGACGGCTCTCCAACTCGCCGCCGACGCTCCGCCCCATTTGGCAGCTACAGTAAGACAACCGGTGGCCGAGCTGAACGGACGATGGACCCGACTGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>315 210 104 83 39 37 33 32 32 23 20 20 20 12 10 10</canonical_bands>
                <polymorphic_bands>315 210 115 104 39 37 33 32 23 20 20 20 12 10 10</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>148 140 128 126 111 99 88 33 20 20 15 12 11 10 10 10 10 9</canonical_bands>
                <polymorphic_bands>276 140 126 111 99 88 33 20 20 15 12 11 10 10 10 10 9</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>353 211 148 143 33 32 20 20 20 10 10</canonical_bands>
                <polymorphic_bands>353 291 211 33 32 20 20 20 10 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGCAAAGGCTAGAAGAGATTA</pcr_primer_p1>
		<pcr_primer_p2>AGTAACCTTGCAACGAAATCTA</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>AAAGCAAAGGCTAGAAGAGATTAATGTACCTTCAGAGGAGGGTTGATATCTAGAGAATTGAATTCTGGAGATTGAGAATACTGTAGCTAGGAAGAAATAATGATTTTGGCTAGATAAACCTGCCCTAAGTTTCTGTACCATAGCCTGGGTTACTGTAGCCTTGGAGTCTCGGTGGTGGACCTGTGGACAGTTCTAGACAATCTTTGAGATTGGGATTACTGTAGCTAGGAGGTAACCTAGATTTCGTTGCAAGGTTACT</canonical_amplicon>
		<polymorphic_amplicon>AAAGCAAAGGCTAGAAGAGATTAATGTACCTTCAGAGGAGGGTTGATATCTAGAGAATTGAATTCTGGAGATTGAGAATACTGTAGCTAGGAAGAAATAATGATTTTGGCTAGATAAACCTGCCCTAAGTTTCTGTACCATAGCCTGGGTTACTGTAGCCTTGGAGTCTCGGTGGTGGACCTGTGGACAGTTCTARACAATCTTTGAGATTGGGATTACTGTAGCTAGGAGGTAACCTAGATTTCGTTGCAAGGTTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33659</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>379203</contig_pos>
        <strand></strand>
        <context>ccgacgtttt[C/G]atatgcatat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCTGAAATTTTTATTTCGTAGACTTTTTTTCATGTGATTTCCGACGTTTT</left_flank>
        <right_flank>ATATGCATATTGCGATAGTTTGAAGAATTTTGAATTTGAAGTGAATTCAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGAATTCTGAATTCACTTTAAATTCGAAATCAAAAGTATGGCAATATGGGTATCAAAATGTTGGAAATCACATGGAAAATAAAGTTGACGACGTGAAAATTTCAGAAAATGATGTTTTCAGAATTCAGAAGACGTCAAAGATTTCTGACAAAAATTCTAAATCCTAAAAACGTCATTTTCAGAAATGTTCACGTCGTCAATCTTCTTTTCCTTGCGATTTCCGTCGTTTTTATACCTCTATTGCCCTAGTTTCAAGAATTTGGAATTCAGAATTCAGAAGACGTCAGAATTCCGAATCTCACCGAACTAGGTCGATATGAGTATCAAAATGACGGAAATCGCATGGAAAACAAAGTTGACGACGTGAAAATTTTAGAAAATGACGTTTTCAGAATTCAGAAGACGTCAAAAATCTTTGACATCTTCTAAATTTTGAAAACACAATATTCTGAAATTTTTATTTCGTAGACTTTTTTTCATGTGATTTCCGACGTTTTCATATGCATATTGCGATAGTTTGAAGAATTTTGAATTTGAAGTGAATTCAGAATCCCGAAGACGTCAAAATTCAGAATCTCACCGAACTAGGTTGATATGAGTATCAAAATGACGGAAATCGCATGGAAAACAAAGTTGACGACGTGAAAATTTTAGAAAATGACGTTTTCAGAATTCAGAAGACGTCAAAGATTTTTGAAGAAAAGAATTCCAAATTTTTGCAGATACACTCCACAACATCAACATCAACCCGGATGTCCGTCGTCTTCTTCTTCGAAATAATTTCTCTAATTTTTAATTATTCGATTTTCTTCAAACCAAAATTTTCAAATTCCCACCACCGGATTCTCAGAATTCTCCCCCCATTCATCTCCTCTACAGTACGCGCCGCCCATCCCGTCATCTTGGGTTACTGTAGGTGGAGATTTTGTTGAGAAGGGATGGATTACTGTAGCTCTTTTTTAATTCTCTGTGATCCTTTAATTTGTTTCCCCAAACTG</canonical>
            <polymorphic>TCTGAATTCTGAATTCACTTTAAATTCGAAATCAAAAGTATGGCAATATGGGTATCAAAATGTTGGAAATCACATGGAAAATAAAGTTGACGACGTGAAAATTTCAGAAAATGATGTTTTCAGAATTCAGAAGACGTCAAAGATTTCTGACAAAAATTCTAAATCCTAAAAACGTCATTTTCAGAAATGTTCACGTCGTCAATCTTCTTTTCCTTGCGATTTCCGTCGTTTTTATACCTCTATTGCCCTAGTTTCAAGAATTTGGAATTCAGAATTCAGAAGACGTCAGAATTCCGAATCTCACCGAACTAGGTCGATATGAGTATCAAAATGACGGAAATCGCATGGAAAACAAAGTTGACGACGTGAAAATTTTAGAAAATGACGTTTTCAGAATTCAGAAGACGTCAAAAATCTTTGACATCTTCTAAATTTTGAAAACACAATATTCTGAAATTTTTATTTCGTAGACTTTTTTTCATGTGATTTCCGACGTTTTSATATGCATATTGCGATAGTTTGAAGAATTTTGAATTTGAAGTGAATTCAGAATCCCGAAGACGTCAAAATTCAGAATCTCACCGAACTAGGTTGATATGAGTATCAAAATGACGGAAATCGCATGGAAAACAAAGTTGACGACGTGAAAATTTTAGAAAATGACGTTTTCAGAATTCAGAAGACGTCAAAGATTTTTGAAGAAAAGAATTCCAAATTTTTGCAGATACACTCCACAACATCAACATCAACCCGGATGTCCGTCGTCTTCTTCTTCGAAATAATTTCTCTAATTTTTAATTATTCGATTTTCTTCAAACCAAAATTTTCAAATTCCCACCACCGGATTCTCAGAATTCTCCCCCCATTCATCTCCTCTACAGTACGCGCCGCCCATCCCGTCATCTTGGGTTACTGTAGGTGGAGATTTTGTTGAGAAGGGATGGATTACTGTAGCTCTTTTTTAATTCTCTGTGATCCTTTAATTTGTTTCCCCAAACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATATG</site>
                <isoschizomers>
                    <enzyme>FauNDI</enzyme>
                    <enzyme>NdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAAAGGGACAGAGGTAGG</pcr_primer_p1>
		<pcr_primer_p2>GGAATTCTTTTCTTCAAAAATCT</pcr_primer_p2>
		<pcr_amplicon_size>869</pcr_amplicon_size>
		<canonical_amplicon>TCATATGCATATTGCGATAGTTTGAAGAATTTTGAATTTGAAGTGAATTCAGAATCCCGAAGACGTCAAAATTCAGAATCTCACCGAACTAGGTTGATATGAGTATCAAAATGACGGAAATCGCATGGAAAACAAAGTTGACGACGTGAAAATTTTAGAAAATGACGTTTTCAGAATTCAGAAGACGTCAAAGATTTTTGAAGAAAAGAATTCC</canonical_amplicon>
		<polymorphic_amplicon>TSATATGCATATTGCGATAGTTTGAAGAATTTTGAATTTGAAGTGAATTCAGAATCCCGAAGACGTCAAAATTCAGAATCTCACCGAACTAGGTTGATATGAGTATCAAAATGACGGAAATCGCATGGAAAACAAAGTTGACGACGTGAAAATTTTAGAAAATGACGTTTTCAGAATTCAGAAGACGTCAAAGATTTTTGAAGAAAAGAATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33660</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>379296</contig_pos>
        <strand></strand>
        <context>cgaactaggt[T/C]gatatgagta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAATTCAGAATCCCGAAGACGTCAAAATTCAGAATCTCACCGAACTAGGT</left_flank>
        <right_flank>GATATGAGTATCAAAATGACGGAAATCGCATGGAAAACAAAGTTGACGAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTGAAAATTTCAGAAAATGATGTTTTCAGAATTCAGAAGACGTCAAAGATTTCTGACAAAAATTCTAAATCCTAAAAACGTCATTTTCAGAAATGTTCACGTCGTCAATCTTCTTTTCCTTGCGATTTCCGTCGTTTTTATACCTCTATTGCCCTAGTTTCAAGAATTTGGAATTCAGAATTCAGAAGACGTCAGAATTCCGAATCTCACCGAACTAGGTCGATATGAGTATCAAAATGACGGAAATCGCATGGAAAACAAAGTTGACGACGTGAAAATTTTAGAAAATGACGTTTTCAGAATTCAGAAGACGTCAAAAATCTTTGACATCTTCTAAATTTTGAAAACACAATATTCTGAAATTTTTATTTCGTAGACTTTTTTTCATGTGATTTCCGACGTTTTCATATGCATATTGCGATAGTTTGAAGAATTTTGAATTTGAAGTGAATTCAGAATCCCGAAGACGTCAAAATTCAGAATCTCACCGAACTAGGTTGATATGAGTATCAAAATGACGGAAATCGCATGGAAAACAAAGTTGACGACGTGAAAATTTTAGAAAATGACGTTTTCAGAATTCAGAAGACGTCAAAGATTTTTGAAGAAAAGAATTCCAAATTTTTGCAGATACACTCCACAACATCAACATCAACCCGGATGTCCGTCGTCTTCTTCTTCGAAATAATTTCTCTAATTTTTAATTATTCGATTTTCTTCAAACCAAAATTTTCAAATTCCCACCACCGGATTCTCAGAATTCTCCCCCCATTCATCTCCTCTACAGTACGCGCCGCCCATCCCGTCATCTTGGGTTACTGTAGGTGGAGATTTTGTTGAGAAGGGATGGATTACTGTAGCTCTTTTTTAATTCTCTGTGATCCTTTAATTTGTTTCCCCAAACTGTCTAAAATTCGATTCGAAAAACCGGTACTCTTCTTTTCGTTCATTTTTTCTATGATCCAAAAATTACGATCCAAATTCTTTTGTCTAATTTAA</canonical>
            <polymorphic>CGTGAAAATTTCAGAAAATGATGTTTTCAGAATTCAGAAGACGTCAAAGATTTCTGACAAAAATTCTAAATCCTAAAAACGTCATTTTCAGAAATGTTCACGTCGTCAATCTTCTTTTCCTTGCGATTTCCGTCGTTTTTATACCTCTATTGCCCTAGTTTCAAGAATTTGGAATTCAGAATTCAGAAGACGTCAGAATTCCGAATCTCACCGAACTAGGTCGATATGAGTATCAAAATGACGGAAATCGCATGGAAAACAAAGTTGACGACGTGAAAATTTTAGAAAATGACGTTTTCAGAATTCAGAAGACGTCAAAAATCTTTGACATCTTCTAAATTTTGAAAACACAATATTCTGAAATTTTTATTTCGTAGACTTTTTTTCATGTGATTTCCGACGTTTTCATATGCATATTGCGATAGTTTGAAGAATTTTGAATTTGAAGTGAATTCAGAATCCCGAAGACGTCAAAATTCAGAATCTCACCGAACTAGGTYGATATGAGTATCAAAATGACGGAAATCGCATGGAAAACAAAGTTGACGACGTGAAAATTTTAGAAAATGACGTTTTCAGAATTCAGAAGACGTCAAAGATTTTTGAAGAAAAGAATTCCAAATTTTTGCAGATACACTCCACAACATCAACATCAACCCGGATGTCCGTCGTCTTCTTCTTCGAAATAATTTCTCTAATTTTTAATTATTCGATTTTCTTCAAACCAAAATTTTCAAATTCCCACCACCGGATTCTCAGAATTCTCCCCCCATTCATCTCCTCTACAGTACGCGCCGCCCATCCCGTCATCTTGGGTTACTGTAGGTGGAGATTTTGTTGAGAAGGGATGGATTACTGTAGCTCTTTTTTAATTCTCTGTGATCCTTTAATTTGTTTCCCCAAACTGTCTAAAATTCGATTCGAAAAACCGGTACTCTTCTTTTCGTTCATTTTTTCTATGATCCAAAAATTACGATCCAAATTCTTTTGTCTAATTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAAGGGACAGAGGTAGG</pcr_primer_p1>
		<pcr_primer_p2>GGAATTCTTTTCTTCAAAAATCT</pcr_primer_p2>
		<pcr_amplicon_size>869</pcr_amplicon_size>
		<canonical_amplicon>TTGATATGAGTATCAAAATGACGGAAATCGCATGGAAAACAAAGTTGACGACGTGAAAATTTTAGAAAATGACGTTTTCAGAATTCAGAAGACGTCAAAGATTTTTGAAGAAAAGAATTCC</canonical_amplicon>
		<polymorphic_amplicon>TYGATATGAGTATCAAAATGACGGAAATCGCATGGAAAACAAAGTTGACGACGTGAAAATTTTAGAAAATGACGTTTTCAGAATTCAGAAGACGTCAAAGATTTTTGAAGAAAAGAATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33661</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>388009</contig_pos>
        <strand>+</strand>
        <context>AGAATACAAA[G/T]GAACATTACA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTAGAGGAGAAACATCATTTGGGTTTTCGTGAATCTTCAGAATACAAA</left_flank>
        <right_flank>GAACATTACAATGAGAGCAATGAGCAAAAATGCGAGGAGTACTGTAGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGGGAAGGTCAAAAATGAAAATCATCCAAATATAGCCGTGTTTATACTTATTTTGAAGCTCATGACAAAAGGAACTCAAAATTATATATTTTTCAGAACTTGAAGCAAGACTGAAAAAGTTAGGGACCATACAAAAATTGCCGAAATTTCAAAATGCTTCAAACTTTGCCGTTTCGTCTCATTTTGAAGCTCATGACAAGCGGAATTCAGAAAAATAGGTTTAATCAATTTACTTACAGTAATCACGGAGTTATCTGTGCAAAAGTTCAATTTGGACGCTTGATCAAGAACATCAATGGAGAGGAAGCAGTCATTGAACTGATGTATAACAGATTTTTGTTCCTAGCTTCGAGTTGATTTTTGAAATCAATTTCTTATCATTTTATCATTTTTTTAAACGCAATTTGAGGCTAAAAATTTGAAAACCAATAAACATATTTATCCATAAATTAGAGGAGAAACATCATTTGGGTTTTCGTGAATCTTCAGAATACAAAGGAACATTACAATGAGAGCAATGAGCAAAAATGCGAGGAGTACTGTAGATTCCGAGTTCTTGAAGACGTCGGTGGGGTGTCTTCAGGTGATGGGAGGATGTAGACTTGGAAGTGACGGAGTTTTTTCTGCAAAAATAGATTCTGAAAATGGCTGAAAATCGAAAATTTCGGAAAATTTCAGATAATTCCAGACAATTTTTCTGGAATTTTGATAATGGAAACGTCGGTTTTTTTTTCGATGTTCAGATAATTTCCTTAATTTCAGCCGGACCTAATTTTTGGGGATTTTCAGAAATTTTTGAAAAAAAATGTTGAAAATTTTTTTTTGGAAATTTTCAAAAATAACTAGTTCTATAATTAAGTTTTAATTGACTAATTAACTCACCGCTGATGGTGCTTATCTCGGATAATTTTTGTTCAAACTCTATAGAACTTAATTTATTGAATTTGGCTTGTTATTAGCTTCAAACTGAGTATAAACATGACCATATTTGGAAAACA</canonical>
            <polymorphic>TGGGGGAAGGTCAAAAATGAAAATCATCCAAATATAGCCGTGTTTATACTTATTTTGAAGCTCATGACAAAAGGAACTCAAAATTATATATTTTTCAGAACTTGAAGCAAGACTGAAAAAGTTAGGGACCATACAAAAATTGCCGAAATTTCAAAATGCTTCAAACTTTGCCGTTTCGTCTCATTTTGAAGCTCATGACAAGCGGAATTCAGAAAAATAGGTTTAATCAATTTACTTACAGTAATCACGGAGTTATCTGTGCAAAAGTTCAATTTGGACGCTTGATCAAGAACATCAATGGAGAGGAAGCAGTCATTGAACTGATGTATAACAGATTTTTGTTCCTAGCTTCGAGTTGATTTTTGAAATCAATTTCTTATCATTTTATCATTTTTTTAAACGCAATTTGAGGCTAAAAATTTGAAAACCAATAAACATATTTATCCATAAATTAGAGGAGAAACATCATTTGGGTTTTCGTGAATCTTCAGAATACAAAKGAACATTACAATGAGAGCAATGAGCAAAAATGCGAGGAGTACTGTAGATTCCGAGTTCTTGAAGACGTCGGTGGGGTGTCTTCAGGTGATGGGAGGATGTAGACTTGGAAGTGACGGAGTTTTTTCTGCAAAAATAGATTCTGAAAATGGCTGAAAATCGAAAATTTCGGAAAATTTCAGATAATTCCAGACAATTTTTCTGGAATTTTGATAATGGAAACGTCGGTTTTTTTTTCGATGTTCAGATAATTTCCTTAATTTCAGCCGGACCTAATTTTTGGGGATTTTCAGAAATTTTTGAAAAAAAATGTTGAAAATTTTTTTTTGGAAATTTTCAAAAATAACTAGTTCTATAATTAAGTTTTAATTGACTAATTAACTCACCGCTGATGGTGCTTATCTCGGATAATTTTTGTTCAAACTCTATAGAACTTAATTTATTGAATTTGGCTTGTTATTAGCTTCAAACTGAGTATAAACATGACCATATTTGGAAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCAGTCATTGAACTGATGTAT</pcr_primer_p1>
		<pcr_primer_p2>ACTCGGAATCTACAGTACTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGCAGTCATTGAACTGATGTATAACAGATTTTTGTTCCTAGCTTCGAGTTGATTTTTGAAATCAATTTCTTATCATTTTATCATTTTTTTAAACGCAATTTGAGGCTAAAAATTTGAAAACCAATAAACATATTTATCCATAAATTAGAGGAGAAACATCATTTGGGTTTTCGTGAATCTTCAGAATACAAAGGAACATTACAATGAGAGCAATGAGCAAAAATGCGAGGAGTACTGTAGATTCCGAGT</canonical_amplicon>
		<polymorphic_amplicon>AAGCAGTCATTGAACTGATGTATAACAGATTTTTGTTCCTAGCTTCGAGTTGATTTTTGAAATCAATTTCTTATCATTTTATCATTTTTTTAAACGCAATTTGAGGCTAAAAATTTGAAAACCAATAAACATATTTATCCATAAATTAGAGGAGAAACATCATTTGGGTTTTCGTGAATCTTCAGAATACAAAKGAACATTACAATGAGAGCAATGAGCAAAAATGCGAGGAGTACTGTAGATTCCGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33662</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>388212</contig_pos>
        <strand>+</strand>
        <context>AATTTTTCTG[A/G]AATTTTGATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAATCGAAAATTTCGGAAAATTTCAGATAATTCCAGACAATTTTTCTG</left_flank>
        <right_flank>AATTTTGATAATGGAAACGTCGGTTTTTTTTTCGATGTTCAGATAATTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAATTCAGAAAAATAGGTTTAATCAATTTACTTACAGTAATCACGGAGTTATCTGTGCAAAAGTTCAATTTGGACGCTTGATCAAGAACATCAATGGAGAGGAAGCAGTCATTGAACTGATGTATAACAGATTTTTGTTCCTAGCTTCGAGTTGATTTTTGAAATCAATTTCTTATCATTTTATCATTTTTTTAAACGCAATTTGAGGCTAAAAATTTGAAAACCAATAAACATATTTATCCATAAATTAGAGGAGAAACATCATTTGGGTTTTCGTGAATCTTCAGAATACAAAGGAACATTACAATGAGAGCAATGAGCAAAAATGCGAGGAGTACTGTAGATTCCGAGTTCTTGAAGACGTCGGTGGGGTGTCTTCAGGTGATGGGAGGATGTAGACTTGGAAGTGACGGAGTTTTTTCTGCAAAAATAGATTCTGAAAATGGCTGAAAATCGAAAATTTCGGAAAATTTCAGATAATTCCAGACAATTTTTCTGGAATTTTGATAATGGAAACGTCGGTTTTTTTTTCGATGTTCAGATAATTTCCTTAATTTCAGCCGGACCTAATTTTTGGGGATTTTCAGAAATTTTTGAAAAAAAATGTTGAAAATTTTTTTTTGGAAATTTTCAAAAATAACTAGTTCTATAATTAAGTTTTAATTGACTAATTAACTCACCGCTGATGGTGCTTATCTCGGATAATTTTTGTTCAAACTCTATAGAACTTAATTTATTGAATTTGGCTTGTTATTAGCTTCAAACTGAGTATAAACATGACCATATTTGGAAAACATTGAAATTTCGATTTTAAAGGCGCATGGACCGCAAAAAATTCAAAATTTTGGAATGGCTTGTGGGTACTCATTTTGAAGCTCTAAACGTACTTAATTCAAATTTTTTAAAATTTGAGTTCGAACAAAAATTGAAAAAGTTATGGATGCTTTTCTGATTTTGAAAAAAAATCACTGAAAGTTAAAATGACCGTATCTCGACTAA</canonical>
            <polymorphic>GGAATTCAGAAAAATAGGTTTAATCAATTTACTTACAGTAATCACGGAGTTATCTGTGCAAAAGTTCAATTTGGACGCTTGATCAAGAACATCAATGGAGAGGAAGCAGTCATTGAACTGATGTATAACAGATTTTTGTTCCTAGCTTCGAGTTGATTTTTGAAATCAATTTCTTATCATTTTATCATTTTTTTAAACGCAATTTGAGGCTAAAAATTTGAAAACCAATAAACATATTTATCCATAAATTAGAGGAGAAACATCATTTGGGTTTTCGTGAATCTTCAGAATACAAAGGAACATTACAATGAGAGCAATGAGCAAAAATGCGAGGAGTACTGTAGATTCCGAGTTCTTGAAGACGTCGGTGGGGTGTCTTCAGGTGATGGGAGGATGTAGACTTGGAAGTGACGGAGTTTTTTCTGCAAAAATAGATTCTGAAAATGGCTGAAAATCGAAAATTTCGGAAAATTTCAGATAATTCCAGACAATTTTTCTGRAATTTTGATAATGGAAACGTCGGTTTTTTTTTCGATGTTCAGATAATTTCCTTAATTTCAGCCGGACCTAATTTTTGGGGATTTTCAGAAATTTTTGAAAAAAAATGTTGAAAATTTTTTTTTGGAAATTTTCAAAAATAACTAGTTCTATAATTAAGTTTTAATTGACTAATTAACTCACCGCTGATGGTGCTTATCTCGGATAATTTTTGTTCAAACTCTATAGAACTTAATTTATTGAATTTGGCTTGTTATTAGCTTCAAACTGAGTATAAACATGACCATATTTGGAAAACATTGAAATTTCGATTTTAAAGGCGCATGGACCGCAAAAAATTCAAAATTTTGGAATGGCTTGTGGGTACTCATTTTGAAGCTCTAAACGTACTTAATTCAAATTTTTTAAAATTTGAGTTCGAACAAAAATTGAAAAAGTTATGGATGCTTTTCTGATTTTGAAAAAAAATCACTGAAAGTTAAAATGACCGTATCTCGACTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>245 212 114 94 89 61 55 33 31 23 14 10 10 7 2</canonical_bands>
                <polymorphic_bands>245 212 120 114 94 61 55 33 23 14 10 10 7 2</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>495 192 129 84 79 13 8</canonical_bands>
                <polymorphic_bands>508 192 129 84 79 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTACTGTAGATTCCGAGTTCTTG</pcr_primer_p1>
		<pcr_primer_p2>AAAATCCCCAAAAATTAGGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTACTGTAGATTCCGAGTTCTTGAAGACGTCGGTGGGGTGTCTTCAGGTGATGGGAGGATGTAGACTTGGAAGTGACGGAGTTTTTTCTGCAAAAATAGATTCTGAAAATGGCTGAAAATCGAAAATTTCGGAAAATTTCAGATAATTCCAGACAATTTTTCTGGAATTTTGATAATGGAAACGTCGGTTTTTTTTTCGATGTTCAGATAATTTCCTTAATTTCAGCCGGACCTAATTTTTGGGGATTTT</canonical_amplicon>
		<polymorphic_amplicon>GTACTGTAGATTCCGAGTTCTTGAAGACGTCGGTGGGGTGTCTTCAGGTGATGGGAGGATGTAGACTTGGAAGTGACGGAGTTTTTTCTGCAAAAATAGATTCTGAAAATGGCTGAAAATCGAAAATTTCGGAAAATTTCAGATAATTCCAGACAATTTTTCTGRAATTTTGATAATGGAAACGTCGGTTTTTTTTTCGATGTTCAGATAATTTCCTTAATTTCAGCCGGACCTAATTTTTGGGGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33663</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>388236</contig_pos>
        <strand>+</strand>
        <context>GAAACGTCGG[C/T]TTTTKTTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGATAATTCCAGACAATTTTTCTGGAATTTTGATAATGGAAACGTCGG</left_flank>
        <right_flank>TTTTTTTTCGATGTTCAGATAATTTCCTTAATTTCAGCCGGACCTAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTTACTTACAGTAATCACGGAGTTATCTGTGCAAAAGTTCAATTTGGACGCTTGATCAAGAACATCAATGGAGAGGAAGCAGTCATTGAACTGATGTATAACAGATTTTTGTTCCTAGCTTCGAGTTGATTTTTGAAATCAATTTCTTATCATTTTATCATTTTTTTAAACGCAATTTGAGGCTAAAAATTTGAAAACCAATAAACATATTTATCCATAAATTAGAGGAGAAACATCATTTGGGTTTTCGTGAATCTTCAGAATACAAAGGAACATTACAATGAGAGCAATGAGCAAAAATGCGAGGAGTACTGTAGATTCCGAGTTCTTGAAGACGTCGGTGGGGTGTCTTCAGGTGATGGGAGGATGTAGACTTGGAAGTGACGGAGTTTTTTCTGCAAAAATAGATTCTGAAAATGGCTGAAAATCGAAAATTTCGGAAAATTTCAGATAATTCCAGACAATTTTTCTGGAATTTTGATAATGGAAACGTCGGTTTTTTTTTCGATGTTCAGATAATTTCCTTAATTTCAGCCGGACCTAATTTTTGGGGATTTTCAGAAATTTTTGAAAAAAAATGTTGAAAATTTTTTTTTGGAAATTTTCAAAAATAACTAGTTCTATAATTAAGTTTTAATTGACTAATTAACTCACCGCTGATGGTGCTTATCTCGGATAATTTTTGTTCAAACTCTATAGAACTTAATTTATTGAATTTGGCTTGTTATTAGCTTCAAACTGAGTATAAACATGACCATATTTGGAAAACATTGAAATTTCGATTTTAAAGGCGCATGGACCGCAAAAAATTCAAAATTTTGGAATGGCTTGTGGGTACTCATTTTGAAGCTCTAAACGTACTTAATTCAAATTTTTTAAAATTTGAGTTCGAACAAAAATTGAAAAAGTTATGGATGCTTTTCTGATTTTGAAAAAAAATCACTGAAAGTTAAAATGACCGTATCTCGACTAATTACAGTCCAAACTCAATAAAACT</canonical>
            <polymorphic>CAATTTACTTACAGTAATCACGGAGTTATCTGTGCAAAAGTTCAATTTGGACGCTTGATCAAGAACATCAATGGAGAGGAAGCAGTCATTGAACTGATGTATAACAGATTTTTGTTCCTAGCTTCGAGTTGATTTTTGAAATCAATTTCTTATCATTTTATCATTTTTTTAAACGCAATTTGAGGCTAAAAATTTGAAAACCAATAAACATATTTATCCATAAATTAGAGGAGAAACATCATTTGGGTTTTCGTGAATCTTCAGAATACAAAGGAACATTACAATGAGAGCAATGAGCAAAAATGCGAGGAGTACTGTAGATTCCGAGTTCTTGAAGACGTCGGTGGGGTGTCTTCAGGTGATGGGAGGATGTAGACTTGGAAGTGACGGAGTTTTTTCTGCAAAAATAGATTCTGAAAATGGCTGAAAATCGAAAATTTCGGAAAATTTCAGATAATTCCAGACAATTTTTCTGGAATTTTGATAATGGAAACGTCGGYTTTTTTTTCGATGTTCAGATAATTTCCTTAATTTCAGCCGGACCTAATTTTTGGGGATTTTCAGAAATTTTTGAAAAAAAATGTTGAAAATTTTTTTTTGGAAATTTTCAAAAATAACTAGTTCTATAATTAAGTTTTAATTGACTAATTAACTCACCGCTGATGGTGCTTATCTCGGATAATTTTTGTTCAAACTCTATAGAACTTAATTTATTGAATTTGGCTTGTTATTAGCTTCAAACTGAGTATAAACATGACCATATTTGGAAAACATTGAAATTTCGATTTTAAAGGCGCATGGACCGCAAAAAATTCAAAATTTTGGAATGGCTTGTGGGTACTCATTTTGAAGCTCTAAACGTACTTAATTCAAATTTTTTAAAATTTGAGTTCGAACAAAAATTGAAAAAGTTATGGATGCTTTTCTGATTTTGAAAAAAAATCACTGAAAGTTAAAATGACCGTATCTCGACTAATTACAGTCCAAACTCAATAAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACTGTAGATTCCGAGTTCTTG</pcr_primer_p1>
		<pcr_primer_p2>AAAATCCCCAAAAATTAGGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTACTGTAGATTCCGAGTTCTTGAAGACGTCGGTGGGGTGTCTTCAGGTGATGGGAGGATGTAGACTTGGAAGTGACGGAGTTTTTTCTGCAAAAATAGATTCTGAAAATGGCTGAAAATCGAAAATTTCGGAAAATTTCAGATAATTCCAGACAATTTTTCTGGAATTTTGATAATGGAAACGTCGGTTTTTTTTTCGATGTTCAGATAATTTCCTTAATTTCAGCCGGACCTAATTTTTGGGGATTTT</canonical_amplicon>
		<polymorphic_amplicon>GTACTGTAGATTCCGAGTTCTTGAAGACGTCGGTGGGGTGTCTTCAGGTGATGGGAGGATGTAGACTTGGAAGTGACGGAGTTTTTTCTGCAAAAATAGATTCTGAAAATGGCTGAAAATCGAAAATTTCGGAAAATTTCAGATAATTCCAGACAATTTTTCTGGAATTTTGATAATGGAAACGTCGGYTTTTTTTTCGATGTTCAGATAATTTCCTTAATTTCAGCCGGACCTAATTTTTGGGGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33664</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>388241</contig_pos>
        <strand>+</strand>
        <context>GTCGGYTTTT[G/T]TTTCGATGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAATTCCAGACAATTTTTCTGGAATTTTGATAATGGAAACGTCGGTTTTT</left_flank>
        <right_flank>TTTCGATGTTCAGATAATTTCCTTAATTTCAGCCGGACCTAATTTTTGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTTACAGTAATCACGGAGTTATCTGTGCAAAAGTTCAATTTGGACGCTTGATCAAGAACATCAATGGAGAGGAAGCAGTCATTGAACTGATGTATAACAGATTTTTGTTCCTAGCTTCGAGTTGATTTTTGAAATCAATTTCTTATCATTTTATCATTTTTTTAAACGCAATTTGAGGCTAAAAATTTGAAAACCAATAAACATATTTATCCATAAATTAGAGGAGAAACATCATTTGGGTTTTCGTGAATCTTCAGAATACAAAGGAACATTACAATGAGAGCAATGAGCAAAAATGCGAGGAGTACTGTAGATTCCGAGTTCTTGAAGACGTCGGTGGGGTGTCTTCAGGTGATGGGAGGATGTAGACTTGGAAGTGACGGAGTTTTTTCTGCAAAAATAGATTCTGAAAATGGCTGAAAATCGAAAATTTCGGAAAATTTCAGATAATTCCAGACAATTTTTCTGGAATTTTGATAATGGAAACGTCGGTTTTTTTTTCGATGTTCAGATAATTTCCTTAATTTCAGCCGGACCTAATTTTTGGGGATTTTCAGAAATTTTTGAAAAAAAATGTTGAAAATTTTTTTTTGGAAATTTTCAAAAATAACTAGTTCTATAATTAAGTTTTAATTGACTAATTAACTCACCGCTGATGGTGCTTATCTCGGATAATTTTTGTTCAAACTCTATAGAACTTAATTTATTGAATTTGGCTTGTTATTAGCTTCAAACTGAGTATAAACATGACCATATTTGGAAAACATTGAAATTTCGATTTTAAAGGCGCATGGACCGCAAAAAATTCAAAATTTTGGAATGGCTTGTGGGTACTCATTTTGAAGCTCTAAACGTACTTAATTCAAATTTTTTAAAATTTGAGTTCGAACAAAAATTGAAAAAGTTATGGATGCTTTTCTGATTTTGAAAAAAAATCACTGAAAGTTAAAATGACCGTATCTCGACTAATTACAGTCCAAACTCAATAAAACTTAGTT</canonical>
            <polymorphic>TACTTACAGTAATCACGGAGTTATCTGTGCAAAAGTTCAATTTGGACGCTTGATCAAGAACATCAATGGAGAGGAAGCAGTCATTGAACTGATGTATAACAGATTTTTGTTCCTAGCTTCGAGTTGATTTTTGAAATCAATTTCTTATCATTTTATCATTTTTTTAAACGCAATTTGAGGCTAAAAATTTGAAAACCAATAAACATATTTATCCATAAATTAGAGGAGAAACATCATTTGGGTTTTCGTGAATCTTCAGAATACAAAGGAACATTACAATGAGAGCAATGAGCAAAAATGCGAGGAGTACTGTAGATTCCGAGTTCTTGAAGACGTCGGTGGGGTGTCTTCAGGTGATGGGAGGATGTAGACTTGGAAGTGACGGAGTTTTTTCTGCAAAAATAGATTCTGAAAATGGCTGAAAATCGAAAATTTCGGAAAATTTCAGATAATTCCAGACAATTTTTCTGGAATTTTGATAATGGAAACGTCGGTTTTTKTTTCGATGTTCAGATAATTTCCTTAATTTCAGCCGGACCTAATTTTTGGGGATTTTCAGAAATTTTTGAAAAAAAATGTTGAAAATTTTTTTTTGGAAATTTTCAAAAATAACTAGTTCTATAATTAAGTTTTAATTGACTAATTAACTCACCGCTGATGGTGCTTATCTCGGATAATTTTTGTTCAAACTCTATAGAACTTAATTTATTGAATTTGGCTTGTTATTAGCTTCAAACTGAGTATAAACATGACCATATTTGGAAAACATTGAAATTTCGATTTTAAAGGCGCATGGACCGCAAAAAATTCAAAATTTTGGAATGGCTTGTGGGTACTCATTTTGAAGCTCTAAACGTACTTAATTCAAATTTTTTAAAATTTGAGTTCGAACAAAAATTGAAAAAGTTATGGATGCTTTTCTGATTTTGAAAAAAAATCACTGAAAGTTAAAATGACCGTATCTCGACTAATTACAGTCCAAACTCAATAAAACTTAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACTGTAGATTCCGAGTTCTTG</pcr_primer_p1>
		<pcr_primer_p2>AAAATCCCCAAAAATTAGGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTACTGTAGATTCCGAGTTCTTGAAGACGTCGGTGGGGTGTCTTCAGGTGATGGGAGGATGTAGACTTGGAAGTGACGGAGTTTTTTCTGCAAAAATAGATTCTGAAAATGGCTGAAAATCGAAAATTTCGGAAAATTTCAGATAATTCCAGACAATTTTTCTGGAATTTTGATAATGGAAACGTCGGTTTTTTTTTCGATGTTCAGATAATTTCCTTAATTTCAGCCGGACCTAATTTTTGGGGATTTT</canonical_amplicon>
		<polymorphic_amplicon>GTACTGTAGATTCCGAGTTCTTGAAGACGTCGGTGGGGTGTCTTCAGGTGATGGGAGGATGTAGACTTGGAAGTGACGGAGTTTTTTCTGCAAAAATAGATTCTGAAAATGGCTGAAAATCGAAAATTTCGGAAAATTTCAGATAATTCCAGACAATTTTTCTGGAATTTTGATAATGGAAACGTCGGTTTTTKTTTCGATGTTCAGATAATTTCCTTAATTTCAGCCGGACCTAATTTTTGGGGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33665</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>388260</contig_pos>
        <strand>+</strand>
        <context>TTCAGATAAT[A/G]TCCTTAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGAATTTTGATAATGGAAACGTCGGTTTTTTTTTCGATGTTCAGATAAT</left_flank>
        <right_flank>TCCTTAATTTCAGCCGGACCTAATTTTTGGGGATTTTCAGAAATTTTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTATCTGTGCAAAAGTTCAATTTGGACGCTTGATCAAGAACATCAATGGAGAGGAAGCAGTCATTGAACTGATGTATAACAGATTTTTGTTCCTAGCTTCGAGTTGATTTTTGAAATCAATTTCTTATCATTTTATCATTTTTTTAAACGCAATTTGAGGCTAAAAATTTGAAAACCAATAAACATATTTATCCATAAATTAGAGGAGAAACATCATTTGGGTTTTCGTGAATCTTCAGAATACAAAGGAACATTACAATGAGAGCAATGAGCAAAAATGCGAGGAGTACTGTAGATTCCGAGTTCTTGAAGACGTCGGTGGGGTGTCTTCAGGTGATGGGAGGATGTAGACTTGGAAGTGACGGAGTTTTTTCTGCAAAAATAGATTCTGAAAATGGCTGAAAATCGAAAATTTCGGAAAATTTCAGATAATTCCAGACAATTTTTCTGGAATTTTGATAATGGAAACGTCGGTTTTTTTTTCGATGTTCAGATAATTTCCTTAATTTCAGCCGGACCTAATTTTTGGGGATTTTCAGAAATTTTTGAAAAAAAATGTTGAAAATTTTTTTTTGGAAATTTTCAAAAATAACTAGTTCTATAATTAAGTTTTAATTGACTAATTAACTCACCGCTGATGGTGCTTATCTCGGATAATTTTTGTTCAAACTCTATAGAACTTAATTTATTGAATTTGGCTTGTTATTAGCTTCAAACTGAGTATAAACATGACCATATTTGGAAAACATTGAAATTTCGATTTTAAAGGCGCATGGACCGCAAAAAATTCAAAATTTTGGAATGGCTTGTGGGTACTCATTTTGAAGCTCTAAACGTACTTAATTCAAATTTTTTAAAATTTGAGTTCGAACAAAAATTGAAAAAGTTATGGATGCTTTTCTGATTTTGAAAAAAAATCACTGAAAGTTAAAATGACCGTATCTCGACTAATTACAGTCCAAACTCAATAAAACTTAGTTTTTTGGATTTGGCTTGTTA</canonical>
            <polymorphic>GTTATCTGTGCAAAAGTTCAATTTGGACGCTTGATCAAGAACATCAATGGAGAGGAAGCAGTCATTGAACTGATGTATAACAGATTTTTGTTCCTAGCTTCGAGTTGATTTTTGAAATCAATTTCTTATCATTTTATCATTTTTTTAAACGCAATTTGAGGCTAAAAATTTGAAAACCAATAAACATATTTATCCATAAATTAGAGGAGAAACATCATTTGGGTTTTCGTGAATCTTCAGAATACAAAGGAACATTACAATGAGAGCAATGAGCAAAAATGCGAGGAGTACTGTAGATTCCGAGTTCTTGAAGACGTCGGTGGGGTGTCTTCAGGTGATGGGAGGATGTAGACTTGGAAGTGACGGAGTTTTTTCTGCAAAAATAGATTCTGAAAATGGCTGAAAATCGAAAATTTCGGAAAATTTCAGATAATTCCAGACAATTTTTCTGGAATTTTGATAATGGAAACGTCGGTTTTTTTTTCGATGTTCAGATAATRTCCTTAATTTCAGCCGGACCTAATTTTTGGGGATTTTCAGAAATTTTTGAAAAAAAATGTTGAAAATTTTTTTTTGGAAATTTTCAAAAATAACTAGTTCTATAATTAAGTTTTAATTGACTAATTAACTCACCGCTGATGGTGCTTATCTCGGATAATTTTTGTTCAAACTCTATAGAACTTAATTTATTGAATTTGGCTTGTTATTAGCTTCAAACTGAGTATAAACATGACCATATTTGGAAAACATTGAAATTTCGATTTTAAAGGCGCATGGACCGCAAAAAATTCAAAATTTTGGAATGGCTTGTGGGTACTCATTTTGAAGCTCTAAACGTACTTAATTCAAATTTTTTAAAATTTGAGTTCGAACAAAAATTGAAAAAGTTATGGATGCTTTTCTGATTTTGAAAAAAAATCACTGAAAGTTAAAATGACCGTATCTCGACTAATTACAGTCCAAACTCAATAAAACTTAGTTTTTTGGATTTGGCTTGTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>213 100 74 61 50 49 44 34 33 33 32 27 25 23 20 19 18 16 14 14 11 11 10 10 10 10 9 9 8 7 6</canonical_bands>
                <polymorphic_bands>213 100 74 61 53 50 49 34 33 33 32 27 25 23 20 19 18 16 14 14 11 11 10 10 10 10 9 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAGATAATTCCAGACAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCTGGAAATTTGATTTGATCT</pcr_primer_p2>
		<pcr_amplicon_size>791</pcr_amplicon_size>
		<canonical_amplicon>TCAGATAATTCCAGACAATTTTTCTGGAATTTTGATAATGGAAACGTCGGTTTTTTTTTCGATGTTCAGATAATTTCCTTAATTTCAGCCGGACCT</canonical_amplicon>
		<polymorphic_amplicon>TCAGATAATTCCAGACAATTTTTCTGGAATTTTGATAATGGAAACGTCGGTTTTTTTTTCGATGTTCAGATAATRTCCTTAATTTCAGCCGGACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33666</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>388396</contig_pos>
        <strand>+</strand>
        <context>TAACTCACCG[C/T]TGATGGTGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATAACTAGTTCTATAATTAAGTTTTAATTGACTAATTAACTCACCG</left_flank>
        <right_flank>TGATGGTGCTTATCTCGGATAATTTTTGTTCAAACTCTATAGAACTTAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATTTTTTTAAACGCAATTTGAGGCTAAAAATTTGAAAACCAATAAACATATTTATCCATAAATTAGAGGAGAAACATCATTTGGGTTTTCGTGAATCTTCAGAATACAAAGGAACATTACAATGAGAGCAATGAGCAAAAATGCGAGGAGTACTGTAGATTCCGAGTTCTTGAAGACGTCGGTGGGGTGTCTTCAGGTGATGGGAGGATGTAGACTTGGAAGTGACGGAGTTTTTTCTGCAAAAATAGATTCTGAAAATGGCTGAAAATCGAAAATTTCGGAAAATTTCAGATAATTCCAGACAATTTTTCTGGAATTTTGATAATGGAAACGTCGGTTTTTTTTTCGATGTTCAGATAATTTCCTTAATTTCAGCCGGACCTAATTTTTGGGGATTTTCAGAAATTTTTGAAAAAAAATGTTGAAAATTTTTTTTTGGAAATTTTCAAAAATAACTAGTTCTATAATTAAGTTTTAATTGACTAATTAACTCACCGCTGATGGTGCTTATCTCGGATAATTTTTGTTCAAACTCTATAGAACTTAATTTATTGAATTTGGCTTGTTATTAGCTTCAAACTGAGTATAAACATGACCATATTTGGAAAACATTGAAATTTCGATTTTAAAGGCGCATGGACCGCAAAAAATTCAAAATTTTGGAATGGCTTGTGGGTACTCATTTTGAAGCTCTAAACGTACTTAATTCAAATTTTTTAAAATTTGAGTTCGAACAAAAATTGAAAAAGTTATGGATGCTTTTCTGATTTTGAAAAAAAATCACTGAAAGTTAAAATGACCGTATCTCGACTAATTACAGTCCAAACTCAATAAAACTTAGTTTTTTGGATTTGGCTTGTTATTAGCTTCAAAATGAGTATAAACATGACCATATTTGGAAAACATTGAAATTTCGATTTTAAAGGCGCAGGGACCACAAAAAAATCAAAATTTTGGAATTATGGCTTGTGGGCACTCATTTTGAAGCTCTAAATGTG</canonical>
            <polymorphic>TCATTTTTTTAAACGCAATTTGAGGCTAAAAATTTGAAAACCAATAAACATATTTATCCATAAATTAGAGGAGAAACATCATTTGGGTTTTCGTGAATCTTCAGAATACAAAGGAACATTACAATGAGAGCAATGAGCAAAAATGCGAGGAGTACTGTAGATTCCGAGTTCTTGAAGACGTCGGTGGGGTGTCTTCAGGTGATGGGAGGATGTAGACTTGGAAGTGACGGAGTTTTTTCTGCAAAAATAGATTCTGAAAATGGCTGAAAATCGAAAATTTCGGAAAATTTCAGATAATTCCAGACAATTTTTCTGGAATTTTGATAATGGAAACGTCGGTTTTTTTTTCGATGTTCAGATAATTTCCTTAATTTCAGCCGGACCTAATTTTTGGGGATTTTCAGAAATTTTTGAAAAAAAATGTTGAAAATTTTTTTTTGGAAATTTTCAAAAATAACTAGTTCTATAATTAAGTTTTAATTGACTAATTAACTCACCGYTGATGGTGCTTATCTCGGATAATTTTTGTTCAAACTCTATAGAACTTAATTTATTGAATTTGGCTTGTTATTAGCTTCAAACTGAGTATAAACATGACCATATTTGGAAAACATTGAAATTTCGATTTTAAAGGCGCATGGACCGCAAAAAATTCAAAATTTTGGAATGGCTTGTGGGTACTCATTTTGAAGCTCTAAACGTACTTAATTCAAATTTTTTAAAATTTGAGTTCGAACAAAAATTGAAAAAGTTATGGATGCTTTTCTGATTTTGAAAAAAAATCACTGAAAGTTAAAATGACCGTATCTCGACTAATTACAGTCCAAACTCAATAAAACTTAGTTTTTTGGATTTGGCTTGTTATTAGCTTCAAAATGAGTATAAACATGACCATATTTGGAAAACATTGAAATTTCGATTTTAAAGGCGCAGGGACCACAAAAAAATCAAAATTTTGGAATTATGGCTTGTGGGCACTCATTTTGAAGCTCTAAATGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>497 357 146</canonical_bands>
                <polymorphic_bands>643 357</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>505 358 137</canonical_bands>
                <polymorphic_bands>642 358</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACCTAATTTTTGGGGATTT</pcr_primer_p1>
		<pcr_primer_p2>GATTTGATCTGGAAAATCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>688</pcr_amplicon_size>
		<canonical_amplicon>GACCTAATTTTTGGGGATTTTCAGAAATTTTTGAAAAAAAATGTTGAAAATTTTTTTTTGGAAATTTTCAAAAATAACTAGTTCTATAATTAAGTTTTAATTGACTAATTAACTCACCGCTGATGGTGCTTATCTCGGATA</canonical_amplicon>
		<polymorphic_amplicon>GACCTAATTTTTGGGGATTTTCAGAAATTTTTGAAAAAAAATGTTGAAAATTTTTTTTTGGAAATTTTCAAAAATAACTAGTTCTATAATTAAGTTTTAATTGACTAATTAACTCACCGYTGATGGTGCTTATCTCGGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33667</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>414808</contig_pos>
        <strand></strand>
        <context>ctataattgg[T/A]gcgttttgaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGG</left_flank>
        <right_flank>GCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGTACATTATCCCAGATAAATGGGAGGCTAAGTTGACAGTGTGTGGGGGCCCTTCTAATGCAGGTTTGAAATTTTCAGATTTTTTGGCAGCTGCTGGACCAAACTACAAATTTTCTTTGGATTTCGAAATTTTGGCGTTTTTTTTTTCAATTTTTTCCCAGTTTAGACATTTTTCGAATAAATTATTTATAAAGCCATTTTTCTTAATATTCTTTAGCCTTTTTCGTTTTTTTTGTTTCAAAGGCTTCCTTCTTTTTTCAGACATTGCTCAGTTTTTTTTTTCGCAGCTGAGCAAACTAGAGTTTATTCTACTAAAATTTCGGTCAAATTTCAATTTTCCTGGCAGCAGCTGAAAAAACATTTATTCTTCCCAATTTTTCACAAAACTAGAACTTCCGTTCCAGGGGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTTTGCAAAACTAGAGAATTCTGTTTTCTAGGTCTAATGGCCTAAAAATTTAACTGATGGTCTAGAAAATATTATCATTGAATTTCACTCGTTTAGAGCTTCAAAATGAGCCTAAACATGGCCAAATTTGGAGCATTTTGGACAACTTTGAAATTTTGCCAATTTTGTATGGTCCCTAACTTTTGGACT</canonical>
            <polymorphic>TCGTACATTATCCCAGATAAATGGGAGGCTAAGTTGACAGTGTGTGGGGGCCCTTCTAATGCAGGTTTGAAATTTTCAGATTTTTTGGCAGCTGCTGGACCAAACTACAAATTTTCTTTGGATTTCGAAATTTTGGCGTTTTTTTTTTCAATTTTTTCCCAGTTTAGACATTTTTCGAATAAATTATTTATAAAGCCATTTTTCTTAATATTCTTTAGCCTTTTTCGTTTTTTTTGTTTCAAAGGCTTCCTTCTTTTTTCAGACATTGCTCAGTTTTTTTTTTCGCAGCTGAGCAAACTAGAGTTTATTCTACTAAAATTTCGGTCAAATTTCAATTTTCCTGGCAGCAGCTGAAAAAACATTTATTCTTCCCAATTTTTCACAAAACTAGAACTTCCGTTCCAGGGGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGWGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTTTGCAAAACTAGAGAATTCTGTTTTCTAGGTCTAATGGCCTAAAAATTTAACTGATGGTCTAGAAAATATTATCATTGAATTTCACTCGTTTAGAGCTTCAAAATGAGCCTAAACATGGCCAAATTTGGAGCATTTTGGACAACTTTGAAATTTTGCCAATTTTGTATGGTCCCTAACTTTTGGACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>336 168 117 112 104 102 42 15 2 2</canonical_bands>
                <polymorphic_bands>336 168 132 112 104 102 42 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTAGAAATCCGACTGATG</pcr_primer_p1>
		<pcr_primer_p2>AAAAACTGGCAAATGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>408</pcr_amplicon_size>
		<canonical_amplicon>GGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGWGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33668</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>414826</contig_pos>
        <strand></strand>
        <context>gaaatttgac[A/C]aaatttgtat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGAC</left_flank>
        <right_flank>AAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGGGAGGCTAAGTTGACAGTGTGTGGGGGCCCTTCTAATGCAGGTTTGAAATTTTCAGATTTTTTGGCAGCTGCTGGACCAAACTACAAATTTTCTTTGGATTTCGAAATTTTGGCGTTTTTTTTTTCAATTTTTTCCCAGTTTAGACATTTTTCGAATAAATTATTTATAAAGCCATTTTTCTTAATATTCTTTAGCCTTTTTCGTTTTTTTTGTTTCAAAGGCTTCCTTCTTTTTTCAGACATTGCTCAGTTTTTTTTTTCGCAGCTGAGCAAACTAGAGTTTATTCTACTAAAATTTCGGTCAAATTTCAATTTTCCTGGCAGCAGCTGAAAAAACATTTATTCTTCCCAATTTTTCACAAAACTAGAACTTCCGTTCCAGGGGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTTTGCAAAACTAGAGAATTCTGTTTTCTAGGTCTAATGGCCTAAAAATTTAACTGATGGTCTAGAAAATATTATCATTGAATTTCACTCGTTTAGAGCTTCAAAATGAGCCTAAACATGGCCAAATTTGGAGCATTTTGGACAACTTTGAAATTTTGCCAATTTTGTATGGTCCCTAACTTTTGGACTTTTGCTCAAAAATTGATG</canonical>
            <polymorphic>AAATGGGAGGCTAAGTTGACAGTGTGTGGGGGCCCTTCTAATGCAGGTTTGAAATTTTCAGATTTTTTGGCAGCTGCTGGACCAAACTACAAATTTTCTTTGGATTTCGAAATTTTGGCGTTTTTTTTTTCAATTTTTTCCCAGTTTAGACATTTTTCGAATAAATTATTTATAAAGCCATTTTTCTTAATATTCTTTAGCCTTTTTCGTTTTTTTTGTTTCAAAGGCTTCCTTCTTTTTTCAGACATTGCTCAGTTTTTTTTTTCGCAGCTGAGCAAACTAGAGTTTATTCTACTAAAATTTCGGTCAAATTTCAATTTTCCTGGCAGCAGCTGAAAAAACATTTATTCTTCCCAATTTTTCACAAAACTAGAACTTCCGTTCCAGGGGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACMAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTTTGCAAAACTAGAGAATTCTGTTTTCTAGGTCTAATGGCCTAAAAATTTAACTGATGGTCTAGAAAATATTATCATTGAATTTCACTCGTTTAGAGCTTCAAAATGAGCCTAAACATGGCCAAATTTGGAGCATTTTGGACAACTTTGAAATTTTGCCAATTTTGTATGGTCCCTAACTTTTGGACTTTTGCTCAAAAATTGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTAGAAATCCGACTGATG</pcr_primer_p1>
		<pcr_primer_p2>AAAAACTGGCAAATGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>408</pcr_amplicon_size>
		<canonical_amplicon>GGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACMAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33669</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>414855</contig_pos>
        <strand></strand>
        <context>actttttcag[C/T]tttygtctaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAG</left_flank>
        <right_flank>TTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGCCCTTCTAATGCAGGTTTGAAATTTTCAGATTTTTTGGCAGCTGCTGGACCAAACTACAAATTTTCTTTGGATTTCGAAATTTTGGCGTTTTTTTTTTCAATTTTTTCCCAGTTTAGACATTTTTCGAATAAATTATTTATAAAGCCATTTTTCTTAATATTCTTTAGCCTTTTTCGTTTTTTTTGTTTCAAAGGCTTCCTTCTTTTTTCAGACATTGCTCAGTTTTTTTTTTCGCAGCTGAGCAAACTAGAGTTTATTCTACTAAAATTTCGGTCAAATTTCAATTTTCCTGGCAGCAGCTGAAAAAACATTTATTCTTCCCAATTTTTCACAAAACTAGAACTTCCGTTCCAGGGGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTTTGCAAAACTAGAGAATTCTGTTTTCTAGGTCTAATGGCCTAAAAATTTAACTGATGGTCTAGAAAATATTATCATTGAATTTCACTCGTTTAGAGCTTCAAAATGAGCCTAAACATGGCCAAATTTGGAGCATTTTGGACAACTTTGAAATTTTGCCAATTTTGTATGGTCCCTAACTTTTGGACTTTTGCTCAAAAATTGATGAAACTTTAATTTTTGAATTTGTCTAGTCA</canonical>
            <polymorphic>GGGCCCTTCTAATGCAGGTTTGAAATTTTCAGATTTTTTGGCAGCTGCTGGACCAAACTACAAATTTTCTTTGGATTTCGAAATTTTGGCGTTTTTTTTTTCAATTTTTTCCCAGTTTAGACATTTTTCGAATAAATTATTTATAAAGCCATTTTTCTTAATATTCTTTAGCCTTTTTCGTTTTTTTTGTTTCAAAGGCTTCCTTCTTTTTTCAGACATTGCTCAGTTTTTTTTTTCGCAGCTGAGCAAACTAGAGTTTATTCTACTAAAATTTCGGTCAAATTTCAATTTTCCTGGCAGCAGCTGAAAAAACATTTATTCTTCCCAATTTTTCACAAAACTAGAACTTCCGTTCCAGGGGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGYTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTTTGCAAAACTAGAGAATTCTGTTTTCTAGGTCTAATGGCCTAAAAATTTAACTGATGGTCTAGAAAATATTATCATTGAATTTCACTCGTTTAGAGCTTCAAAATGAGCCTAAACATGGCCAAATTTGGAGCATTTTGGACAACTTTGAAATTTTGCCAATTTTGTATGGTCCCTAACTTTTGGACTTTTGCTCAAAAATTGATGAAACTTTAATTTTTGAATTTGTCTAGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>197 138 130 126 109 80 62 55 52 44 7</canonical_bands>
                <polymorphic_bands>197 138 132 130 126 109 62 55 44 7</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>126 115 104 78 72 62 58 57 55 52 43 41 31 27 23 12 12 11 11 7 3</canonical_bands>
                <polymorphic_bands>126 115 109 104 78 72 62 58 55 43 41 31 27 23 12 12 11 11 7 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTAGAAATCCGACTGATG</pcr_primer_p1>
		<pcr_primer_p2>AAAAACTGGCAAATGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>408</pcr_amplicon_size>
		<canonical_amplicon>GGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGYTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33670</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>414859</contig_pos>
        <strand></strand>
        <context>tttcagyttt[C/T]gtctaaaatc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTT</left_flank>
        <right_flank>GTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTCTAATGCAGGTTTGAAATTTTCAGATTTTTTGGCAGCTGCTGGACCAAACTACAAATTTTCTTTGGATTTCGAAATTTTGGCGTTTTTTTTTTCAATTTTTTCCCAGTTTAGACATTTTTCGAATAAATTATTTATAAAGCCATTTTTCTTAATATTCTTTAGCCTTTTTCGTTTTTTTTGTTTCAAAGGCTTCCTTCTTTTTTCAGACATTGCTCAGTTTTTTTTTTCGCAGCTGAGCAAACTAGAGTTTATTCTACTAAAATTTCGGTCAAATTTCAATTTTCCTGGCAGCAGCTGAAAAAACATTTATTCTTCCCAATTTTTCACAAAACTAGAACTTCCGTTCCAGGGGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTTTGCAAAACTAGAGAATTCTGTTTTCTAGGTCTAATGGCCTAAAAATTTAACTGATGGTCTAGAAAATATTATCATTGAATTTCACTCGTTTAGAGCTTCAAAATGAGCCTAAACATGGCCAAATTTGGAGCATTTTGGACAACTTTGAAATTTTGCCAATTTTGTATGGTCCCTAACTTTTGGACTTTTGCTCAAAAATTGATGAAACTTTAATTTTTGAATTTGTCTAGTCATGAG</canonical>
            <polymorphic>CCTTCTAATGCAGGTTTGAAATTTTCAGATTTTTTGGCAGCTGCTGGACCAAACTACAAATTTTCTTTGGATTTCGAAATTTTGGCGTTTTTTTTTTCAATTTTTTCCCAGTTTAGACATTTTTCGAATAAATTATTTATAAAGCCATTTTTCTTAATATTCTTTAGCCTTTTTCGTTTTTTTTGTTTCAAAGGCTTCCTTCTTTTTTCAGACATTGCTCAGTTTTTTTTTTCGCAGCTGAGCAAACTAGAGTTTATTCTACTAAAATTTCGGTCAAATTTCAATTTTCCTGGCAGCAGCTGAAAAAACATTTATTCTTCCCAATTTTTCACAAAACTAGAACTTCCGTTCCAGGGGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTYGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTTTGCAAAACTAGAGAATTCTGTTTTCTAGGTCTAATGGCCTAAAAATTTAACTGATGGTCTAGAAAATATTATCATTGAATTTCACTCGTTTAGAGCTTCAAAATGAGCCTAAACATGGCCAAATTTGGAGCATTTTGGACAACTTTGAAATTTTGCCAATTTTGTATGGTCCCTAACTTTTGGACTTTTGCTCAAAAATTGATGAAACTTTAATTTTTGAATTTGTCTAGTCATGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTAGAAATCCGACTGATG</pcr_primer_p1>
		<pcr_primer_p2>AAAAACTGGCAAATGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>408</pcr_amplicon_size>
		<canonical_amplicon>GGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTYGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33671</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>414893</contig_pos>
        <strand></strand>
        <context>tttttgagtt[C/T]cccwtgttat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTT</left_flank>
        <right_flank>CCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCAGCTGCTGGACCAAACTACAAATTTTCTTTGGATTTCGAAATTTTGGCGTTTTTTTTTTCAATTTTTTCCCAGTTTAGACATTTTTCGAATAAATTATTTATAAAGCCATTTTTCTTAATATTCTTTAGCCTTTTTCGTTTTTTTTGTTTCAAAGGCTTCCTTCTTTTTTCAGACATTGCTCAGTTTTTTTTTTCGCAGCTGAGCAAACTAGAGTTTATTCTACTAAAATTTCGGTCAAATTTCAATTTTCCTGGCAGCAGCTGAAAAAACATTTATTCTTCCCAATTTTTCACAAAACTAGAACTTCCGTTCCAGGGGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTTTGCAAAACTAGAGAATTCTGTTTTCTAGGTCTAATGGCCTAAAAATTTAACTGATGGTCTAGAAAATATTATCATTGAATTTCACTCGTTTAGAGCTTCAAAATGAGCCTAAACATGGCCAAATTTGGAGCATTTTGGACAACTTTGAAATTTTGCCAATTTTGTATGGTCCCTAACTTTTGGACTTTTGCTCAAAAATTGATGAAACTTTAATTTTTGAATTTGTCTAGTCATGAGCTTCAAAATGAGTATAAACACGACTATATTCTGA</canonical>
            <polymorphic>TGGCAGCTGCTGGACCAAACTACAAATTTTCTTTGGATTTCGAAATTTTGGCGTTTTTTTTTTCAATTTTTTCCCAGTTTAGACATTTTTCGAATAAATTATTTATAAAGCCATTTTTCTTAATATTCTTTAGCCTTTTTCGTTTTTTTTGTTTCAAAGGCTTCCTTCTTTTTTCAGACATTGCTCAGTTTTTTTTTTCGCAGCTGAGCAAACTAGAGTTTATTCTACTAAAATTTCGGTCAAATTTCAATTTTCCTGGCAGCAGCTGAAAAAACATTTATTCTTCCCAATTTTTCACAAAACTAGAACTTCCGTTCCAGGGGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTYCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTTTGCAAAACTAGAGAATTCTGTTTTCTAGGTCTAATGGCCTAAAAATTTAACTGATGGTCTAGAAAATATTATCATTGAATTTCACTCGTTTAGAGCTTCAAAATGAGCCTAAACATGGCCAAATTTGGAGCATTTTGGACAACTTTGAAATTTTGCCAATTTTGTATGGTCCCTAACTTTTGGACTTTTGCTCAAAAATTGATGAAACTTTAATTTTTGAATTTGTCTAGTCATGAGCTTCAAAATGAGTATAAACACGACTATATTCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTAGAAATCCGACTGATG</pcr_primer_p1>
		<pcr_primer_p2>AAAAACTGGCAAATGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>408</pcr_amplicon_size>
		<canonical_amplicon>GGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTYCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33672</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>414897</contig_pos>
        <strand></strand>
        <context>tgagttyccc[A/T]tgttatgasc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCC</left_flank>
        <right_flank>TGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTGCTGGACCAAACTACAAATTTTCTTTGGATTTCGAAATTTTGGCGTTTTTTTTTTCAATTTTTTCCCAGTTTAGACATTTTTCGAATAAATTATTTATAAAGCCATTTTTCTTAATATTCTTTAGCCTTTTTCGTTTTTTTTGTTTCAAAGGCTTCCTTCTTTTTTCAGACATTGCTCAGTTTTTTTTTTCGCAGCTGAGCAAACTAGAGTTTATTCTACTAAAATTTCGGTCAAATTTCAATTTTCCTGGCAGCAGCTGAAAAAACATTTATTCTTCCCAATTTTTCACAAAACTAGAACTTCCGTTCCAGGGGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTTTGCAAAACTAGAGAATTCTGTTTTCTAGGTCTAATGGCCTAAAAATTTAACTGATGGTCTAGAAAATATTATCATTGAATTTCACTCGTTTAGAGCTTCAAAATGAGCCTAAACATGGCCAAATTTGGAGCATTTTGGACAACTTTGAAATTTTGCCAATTTTGTATGGTCCCTAACTTTTGGACTTTTGCTCAAAAATTGATGAAACTTTAATTTTTGAATTTGTCTAGTCATGAGCTTCAAAATGAGTATAAACACGACTATATTCTGATGAT</canonical>
            <polymorphic>AGCTGCTGGACCAAACTACAAATTTTCTTTGGATTTCGAAATTTTGGCGTTTTTTTTTTCAATTTTTTCCCAGTTTAGACATTTTTCGAATAAATTATTTATAAAGCCATTTTTCTTAATATTCTTTAGCCTTTTTCGTTTTTTTTGTTTCAAAGGCTTCCTTCTTTTTTCAGACATTGCTCAGTTTTTTTTTTCGCAGCTGAGCAAACTAGAGTTTATTCTACTAAAATTTCGGTCAAATTTCAATTTTCCTGGCAGCAGCTGAAAAAACATTTATTCTTCCCAATTTTTCACAAAACTAGAACTTCCGTTCCAGGGGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCWTGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTTTGCAAAACTAGAGAATTCTGTTTTCTAGGTCTAATGGCCTAAAAATTTAACTGATGGTCTAGAAAATATTATCATTGAATTTCACTCGTTTAGAGCTTCAAAATGAGCCTAAACATGGCCAAATTTGGAGCATTTTGGACAACTTTGAAATTTTGCCAATTTTGTATGGTCCCTAACTTTTGGACTTTTGCTCAAAAATTGATGAAACTTTAATTTTTGAATTTGTCTAGTCATGAGCTTCAAAATGAGTATAAACACGACTATATTCTGATGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>499 170 118 65 55 43 43 7</canonical_bands>
                <polymorphic_bands>564 170 118 55 43 43 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTAGAAATCCGACTGATG</pcr_primer_p1>
		<pcr_primer_p2>AAAAACTGGCAAATGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>408</pcr_amplicon_size>
		<canonical_amplicon>GGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCWTGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33673</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>414906</contig_pos>
        <strand></strand>
        <context>cwtgttatga[G/C]cttcaaaacg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGA</left_flank>
        <right_flank>CTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCAAACTACAAATTTTCTTTGGATTTCGAAATTTTGGCGTTTTTTTTTTCAATTTTTTCCCAGTTTAGACATTTTTCGAATAAATTATTTATAAAGCCATTTTTCTTAATATTCTTTAGCCTTTTTCGTTTTTTTTGTTTCAAAGGCTTCCTTCTTTTTTCAGACATTGCTCAGTTTTTTTTTTCGCAGCTGAGCAAACTAGAGTTTATTCTACTAAAATTTCGGTCAAATTTCAATTTTCCTGGCAGCAGCTGAAAAAACATTTATTCTTCCCAATTTTTCACAAAACTAGAACTTCCGTTCCAGGGGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTTTGCAAAACTAGAGAATTCTGTTTTCTAGGTCTAATGGCCTAAAAATTTAACTGATGGTCTAGAAAATATTATCATTGAATTTCACTCGTTTAGAGCTTCAAAATGAGCCTAAACATGGCCAAATTTGGAGCATTTTGGACAACTTTGAAATTTTGCCAATTTTGTATGGTCCCTAACTTTTGGACTTTTGCTCAAAAATTGATGAAACTTTAATTTTTGAATTTGTCTAGTCATGAGCTTCAAAATGAGTATAAACACGACTATATTCTGATGATTTTCAGTTT</canonical>
            <polymorphic>ACCAAACTACAAATTTTCTTTGGATTTCGAAATTTTGGCGTTTTTTTTTTCAATTTTTTCCCAGTTTAGACATTTTTCGAATAAATTATTTATAAAGCCATTTTTCTTAATATTCTTTAGCCTTTTTCGTTTTTTTTGTTTCAAAGGCTTCCTTCTTTTTTCAGACATTGCTCAGTTTTTTTTTTCGCAGCTGAGCAAACTAGAGTTTATTCTACTAAAATTTCGGTCAAATTTCAATTTTCCTGGCAGCAGCTGAAAAAACATTTATTCTTCCCAATTTTTCACAAAACTAGAACTTCCGTTCCAGGGGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGASCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTTTGCAAAACTAGAGAATTCTGTTTTCTAGGTCTAATGGCCTAAAAATTTAACTGATGGTCTAGAAAATATTATCATTGAATTTCACTCGTTTAGAGCTTCAAAATGAGCCTAAACATGGCCAAATTTGGAGCATTTTGGACAACTTTGAAATTTTGCCAATTTTGTATGGTCCCTAACTTTTGGACTTTTGCTCAAAAATTGATGAAACTTTAATTTTTGAATTTGTCTAGTCATGAGCTTCAAAATGAGTATAAACACGACTATATTCTGATGATTTTCAGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>190 142 130 126 109 80 62 55 52 47 7</canonical_bands>
                <polymorphic_bands>190 178 142 130 109 80 62 55 47 7</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>126 119 97 78 72 62 58 57 55 52 47 43 31 27 23 12 12 11 11 7</canonical_bands>
                <polymorphic_bands>178 119 97 78 72 62 58 57 55 47 43 31 27 23 12 12 11 11 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTAGAAATCCGACTGATG</pcr_primer_p1>
		<pcr_primer_p2>AAAAACTGGCAAATGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>408</pcr_amplicon_size>
		<canonical_amplicon>GGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGASCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33674</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>414985</contig_pos>
        <strand></strand>
        <context>ctttaaggtc[G/A]aaaattgcat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTC</left_flank>
        <right_flank>AAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAAATTATTTATAAAGCCATTTTTCTTAATATTCTTTAGCCTTTTTCGTTTTTTTTGTTTCAAAGGCTTCCTTCTTTTTTCAGACATTGCTCAGTTTTTTTTTTCGCAGCTGAGCAAACTAGAGTTTATTCTACTAAAATTTCGGTCAAATTTCAATTTTCCTGGCAGCAGCTGAAAAAACATTTATTCTTCCCAATTTTTCACAAAACTAGAACTTCCGTTCCAGGGGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTTTGCAAAACTAGAGAATTCTGTTTTCTAGGTCTAATGGCCTAAAAATTTAACTGATGGTCTAGAAAATATTATCATTGAATTTCACTCGTTTAGAGCTTCAAAATGAGCCTAAACATGGCCAAATTTGGAGCATTTTGGACAACTTTGAAATTTTGCCAATTTTGTATGGTCCCTAACTTTTGGACTTTTGCTCAAAAATTGATGAAACTTTAATTTTTGAATTTGTCTAGTCATGAGCTTCAAAATGAGTATAAACACGACTATATTCTGATGATTTTCAGTTTTGACCATTTTCCACCTACCCCCTATGCGCCTTTAAAGTCAAAAATCGAATATTTCAGAATTGAGTCGTGTTTATACTCA</canonical>
            <polymorphic>AATAAATTATTTATAAAGCCATTTTTCTTAATATTCTTTAGCCTTTTTCGTTTTTTTTGTTTCAAAGGCTTCCTTCTTTTTTCAGACATTGCTCAGTTTTTTTTTTCGCAGCTGAGCAAACTAGAGTTTATTCTACTAAAATTTCGGTCAAATTTCAATTTTCCTGGCAGCAGCTGAAAAAACATTTATTCTTCCCAATTTTTCACAAAACTAGAACTTCCGTTCCAGGGGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCRAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTTTGCAAAACTAGAGAATTCTGTTTTCTAGGTCTAATGGCCTAAAAATTTAACTGATGGTCTAGAAAATATTATCATTGAATTTCACTCGTTTAGAGCTTCAAAATGAGCCTAAACATGGCCAAATTTGGAGCATTTTGGACAACTTTGAAATTTTGCCAATTTTGTATGGTCCCTAACTTTTGGACTTTTGCTCAAAAATTGATGAAACTTTAATTTTTGAATTTGTCTAGTCATGAGCTTCAAAATGAGTATAAACACGACTATATTCTGATGATTTTCAGTTTTGACCATTTTCCACCTACCCCCTATGCGCCTTTAAAGTCAAAAATCGAATATTTCAGAATTGAGTCGTGTTTATACTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>468 384 115 33</canonical_bands>
                <polymorphic_bands>583 384 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTAGAAATCCGACTGATG</pcr_primer_p1>
		<pcr_primer_p2>AAAAACTGGCAAATGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>408</pcr_amplicon_size>
		<canonical_amplicon>GGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCRAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33675</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>415000</contig_pos>
        <strand></strand>
        <context>ttgcatttgt[T/C]acaaataagg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGT</left_flank>
        <right_flank>ACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCCATTTTTCTTAATATTCTTTAGCCTTTTTCGTTTTTTTTGTTTCAAAGGCTTCCTTCTTTTTTCAGACATTGCTCAGTTTTTTTTTTCGCAGCTGAGCAAACTAGAGTTTATTCTACTAAAATTTCGGTCAAATTTCAATTTTCCTGGCAGCAGCTGAAAAAACATTTATTCTTCCCAATTTTTCACAAAACTAGAACTTCCGTTCCAGGGGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTTTGCAAAACTAGAGAATTCTGTTTTCTAGGTCTAATGGCCTAAAAATTTAACTGATGGTCTAGAAAATATTATCATTGAATTTCACTCGTTTAGAGCTTCAAAATGAGCCTAAACATGGCCAAATTTGGAGCATTTTGGACAACTTTGAAATTTTGCCAATTTTGTATGGTCCCTAACTTTTGGACTTTTGCTCAAAAATTGATGAAACTTTAATTTTTGAATTTGTCTAGTCATGAGCTTCAAAATGAGTATAAACACGACTATATTCTGATGATTTTCAGTTTTGACCATTTTCCACCTACCCCCTATGCGCCTTTAAAGTCAAAAATCGAATATTTCAGAATTGAGTCGTGTTTATACTCATTTCAAAGCTCATAA</canonical>
            <polymorphic>AAGCCATTTTTCTTAATATTCTTTAGCCTTTTTCGTTTTTTTTGTTTCAAAGGCTTCCTTCTTTTTTCAGACATTGCTCAGTTTTTTTTTTCGCAGCTGAGCAAACTAGAGTTTATTCTACTAAAATTTCGGTCAAATTTCAATTTTCCTGGCAGCAGCTGAAAAAACATTTATTCTTCCCAATTTTTCACAAAACTAGAACTTCCGTTCCAGGGGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTYACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTTTGCAAAACTAGAGAATTCTGTTTTCTAGGTCTAATGGCCTAAAAATTTAACTGATGGTCTAGAAAATATTATCATTGAATTTCACTCGTTTAGAGCTTCAAAATGAGCCTAAACATGGCCAAATTTGGAGCATTTTGGACAACTTTGAAATTTTGCCAATTTTGTATGGTCCCTAACTTTTGGACTTTTGCTCAAAAATTGATGAAACTTTAATTTTTGAATTTGTCTAGTCATGAGCTTCAAAATGAGTATAAACACGACTATATTCTGATGATTTTCAGTTTTGACCATTTTCCACCTACCCCCTATGCGCCTTTAAAGTCAAAAATCGAATATTTCAGAATTGAGTCGTGTTTATACTCATTTCAAAGCTCATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTAGAAATCCGACTGATG</pcr_primer_p1>
		<pcr_primer_p2>AAAAACTGGCAAATGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>408</pcr_amplicon_size>
		<canonical_amplicon>GGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTYACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33676</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>415015</contig_pos>
        <strand></strand>
        <context>ataaggcatg[C/T]ttatactcat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATG</left_flank>
        <right_flank>TTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATTCTTTAGCCTTTTTCGTTTTTTTTGTTTCAAAGGCTTCCTTCTTTTTTCAGACATTGCTCAGTTTTTTTTTTCGCAGCTGAGCAAACTAGAGTTTATTCTACTAAAATTTCGGTCAAATTTCAATTTTCCTGGCAGCAGCTGAAAAAACATTTATTCTTCCCAATTTTTCACAAAACTAGAACTTCCGTTCCAGGGGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTTTGCAAAACTAGAGAATTCTGTTTTCTAGGTCTAATGGCCTAAAAATTTAACTGATGGTCTAGAAAATATTATCATTGAATTTCACTCGTTTAGAGCTTCAAAATGAGCCTAAACATGGCCAAATTTGGAGCATTTTGGACAACTTTGAAATTTTGCCAATTTTGTATGGTCCCTAACTTTTGGACTTTTGCTCAAAAATTGATGAAACTTTAATTTTTGAATTTGTCTAGTCATGAGCTTCAAAATGAGTATAAACACGACTATATTCTGATGATTTTCAGTTTTGACCATTTTCCACCTACCCCCTATGCGCCTTTAAAGTCAAAAATCGAATATTTCAGAATTGAGTCGTGTTTATACTCATTTCAAAGCTCATAACAAGGCAAATCCAAA</canonical>
            <polymorphic>ATATTCTTTAGCCTTTTTCGTTTTTTTTGTTTCAAAGGCTTCCTTCTTTTTTCAGACATTGCTCAGTTTTTTTTTTCGCAGCTGAGCAAACTAGAGTTTATTCTACTAAAATTTCGGTCAAATTTCAATTTTCCTGGCAGCAGCTGAAAAAACATTTATTCTTCCCAATTTTTCACAAAACTAGAACTTCCGTTCCAGGGGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGYTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTTTGCAAAACTAGAGAATTCTGTTTTCTAGGTCTAATGGCCTAAAAATTTAACTGATGGTCTAGAAAATATTATCATTGAATTTCACTCGTTTAGAGCTTCAAAATGAGCCTAAACATGGCCAAATTTGGAGCATTTTGGACAACTTTGAAATTTTGCCAATTTTGTATGGTCCCTAACTTTTGGACTTTTGCTCAAAAATTGATGAAACTTTAATTTTTGAATTTGTCTAGTCATGAGCTTCAAAATGAGTATAAACACGACTATATTCTGATGATTTTCAGTTTTGACCATTTTCCACCTACCCCCTATGCGCCTTTAAAGTCAAAAATCGAATATTTCAGAATTGAGTCGTGTTTATACTCATTTCAAAGCTCATAACAAGGCAAATCCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCATGC</site>
                <isoschizomers>
                    <enzyme>BbuI</enzyme>
                    <enzyme>PaeI</enzyme>
                    <enzyme>SpaHI</enzyme>
                    <enzyme>SphI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTAGAAATCCGACTGATG</pcr_primer_p1>
		<pcr_primer_p2>AAAAACTGGCAAATGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>408</pcr_amplicon_size>
		<canonical_amplicon>GGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGYTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33677</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>415060</contig_pos>
        <strand></strand>
        <context>acgaaaatct[G/A]agtttcatga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCT</left_flank>
        <right_flank>AGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCAT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTTTCAGACATTGCTCAGTTTTTTTTTTCGCAGCTGAGCAAACTAGAGTTTATTCTACTAAAATTTCGGTCAAATTTCAATTTTCCTGGCAGCAGCTGAAAAAACATTTATTCTTCCCAATTTTTCACAAAACTAGAACTTCCGTTCCAGGGGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTTTGCAAAACTAGAGAATTCTGTTTTCTAGGTCTAATGGCCTAAAAATTTAACTGATGGTCTAGAAAATATTATCATTGAATTTCACTCGTTTAGAGCTTCAAAATGAGCCTAAACATGGCCAAATTTGGAGCATTTTGGACAACTTTGAAATTTTGCCAATTTTGTATGGTCCCTAACTTTTGGACTTTTGCTCAAAAATTGATGAAACTTTAATTTTTGAATTTGTCTAGTCATGAGCTTCAAAATGAGTATAAACACGACTATATTCTGATGATTTTCAGTTTTGACCATTTTCCACCTACCCCCTATGCGCCTTTAAAGTCAAAAATCGAATATTTCAGAATTGAGTCGTGTTTATACTCATTTCAAAGCTCATAACAAGGCAAATCCAAAAATATAATTTACAGCAATTTTGAAGCAACACTGAAAAAGTTATGT</canonical>
            <polymorphic>CTTTTTTCAGACATTGCTCAGTTTTTTTTTTCGCAGCTGAGCAAACTAGAGTTTATTCTACTAAAATTTCGGTCAAATTTCAATTTTCCTGGCAGCAGCTGAAAAAACATTTATTCTTCCCAATTTTTCACAAAACTAGAACTTCCGTTCCAGGGGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTRAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTTTGCAAAACTAGAGAATTCTGTTTTCTAGGTCTAATGGCCTAAAAATTTAACTGATGGTCTAGAAAATATTATCATTGAATTTCACTCGTTTAGAGCTTCAAAATGAGCCTAAACATGGCCAAATTTGGAGCATTTTGGACAACTTTGAAATTTTGCCAATTTTGTATGGTCCCTAACTTTTGGACTTTTGCTCAAAAATTGATGAAACTTTAATTTTTGAATTTGTCTAGTCATGAGCTTCAAAATGAGTATAAACACGACTATATTCTGATGATTTTCAGTTTTGACCATTTTCCACCTACCCCCTATGCGCCTTTAAAGTCAAAAATCGAATATTTCAGAATTGAGTCGTGTTTATACTCATTTCAAAGCTCATAACAAGGCAAATCCAAAAATATAATTTACAGCAATTTTGAAGCAACACTGAAAAAGTTATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>332 332 158 98 71 9</canonical_bands>
                <polymorphic_bands>664 158 98 71 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTAGAAATCCGACTGATG</pcr_primer_p1>
		<pcr_primer_p2>AAAAACTGGCAAATGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>408</pcr_amplicon_size>
		<canonical_amplicon>GGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTRAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33678</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>415161</contig_pos>
        <strand></strand>
        <context>GTCTAATGGC[C/T]TAaaaattta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGCCAGTTTTTTGCAAAACTAGAGAATTCTGTTTTCTAGGTCTAATGGC</left_flank>
        <right_flank>TAAAAATTTAACTGATGGTCTAGAAAATATTATCATTGAATTTCACTCGT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAACATTTATTCTTCCCAATTTTTCACAAAACTAGAACTTCCGTTCCAGGGGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTTTGCAAAACTAGAGAATTCTGTTTTCTAGGTCTAATGGCCTAAAAATTTAACTGATGGTCTAGAAAATATTATCATTGAATTTCACTCGTTTAGAGCTTCAAAATGAGCCTAAACATGGCCAAATTTGGAGCATTTTGGACAACTTTGAAATTTTGCCAATTTTGTATGGTCCCTAACTTTTGGACTTTTGCTCAAAAATTGATGAAACTTTAATTTTTGAATTTGTCTAGTCATGAGCTTCAAAATGAGTATAAACACGACTATATTCTGATGATTTTCAGTTTTGACCATTTTCCACCTACCCCCTATGCGCCTTTAAAGTCAAAAATCGAATATTTCAGAATTGAGTCGTGTTTATACTCATTTCAAAGCTCATAACAAGGCAAATCCAAAAATATAATTTACAGCAATTTTGAAGCAACACTGAAAAAGTTATGTTCCATCCAAATTTTGGCCAAATTTCAAAATCATCCGAATTGGGCCGTGTTTATACTCATTTTAAAGCTCTAAACATGATGAATTCGAAAATCTAGGTTTTT</canonical>
            <polymorphic>AAAAAACATTTATTCTTCCCAATTTTTCACAAAACTAGAACTTCCGTTCCAGGGGTTTAGAAATCCGACTGATGGCCTAGAAAATACTTCCATTGAATTGTCCTAGCTTAGAGCTTCAAAATGAGCCTAAACACGGCTATAATTGGTGCGTTTTGAAATTTGACAAAATTTGTATGGTCCATAACTTTTTCAGCTTTCGTCTAAAATCGATGAAACATTGATTTTTGAGTTCCCCATGTTATGAGCTTCAAAACGAGTATAAACACGACCATATTTGGGGGAAATTTTGATTTTTGCCCCATGGACCATGCGCCTTTAAGGTCGAAAATTGCATTTGTTACAAATAAGGCATGCTTATACTCATTTTAAAGCTGGTGACAAGGCAAATACGAAAATCTGAGTTTCATGAGATTTAGAGCGAAACAGCTGAAAGATTTATTTTTTTTCATTTGCCAGTTTTTTGCAAAACTAGAGAATTCTGTTTTCTAGGTCTAATGGCYTAAAAATTTAACTGATGGTCTAGAAAATATTATCATTGAATTTCACTCGTTTAGAGCTTCAAAATGAGCCTAAACATGGCCAAATTTGGAGCATTTTGGACAACTTTGAAATTTTGCCAATTTTGTATGGTCCCTAACTTTTGGACTTTTGCTCAAAAATTGATGAAACTTTAATTTTTGAATTTGTCTAGTCATGAGCTTCAAAATGAGTATAAACACGACTATATTCTGATGATTTTCAGTTTTGACCATTTTCCACCTACCCCCTATGCGCCTTTAAAGTCAAAAATCGAATATTTCAGAATTGAGTCGTGTTTATACTCATTTCAAAGCTCATAACAAGGCAAATCCAAAAATATAATTTACAGCAATTTTGAAGCAACACTGAAAAAGTTATGTTCCATCCAAATTTTGGCCAAATTTCAAAATCATCCGAATTGGGCCGTGTTTATACTCATTTTAAAGCTCTAAACATGATGAATTCGAAAATCTAGGTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>423 336 81 75 58 27</canonical_bands>
                <polymorphic_bands>504 336 75 58 27</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>134 126 119 83 75 72 58 57 55 52 35 31 27 23 12 12 11 11 7</canonical_bands>
                <polymorphic_bands>134 130 126 119 83 75 57 55 52 35 31 27 23 12 12 11 11 7</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>423 336 85 81 75</canonical_bands>
                <polymorphic_bands>504 336 85 75</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCATTTGCCAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAGAGCTGATGTGAGCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>630</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCATTTGCCAGTTTTTTGCAAAACTAGAGAATTCTGTTTTCTAGGTCTAATGGCCTAAAAATTTAACTGATGGT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCATTTGCCAGTTTTTTGCAAAACTAGAGAATTCTGTTTTCTAGGTCTAATGGCYTAAAAATTTAACTGATGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33679</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>418069</contig_pos>
        <strand></strand>
        <context>ggcgcatggt[T/C]caggggcaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACACGACATGCTTCCACAAATTTTAAATTTTGACCTTAAAGGCGCATGGT</left_flank>
        <right_flank>CAGGGGCAAAAATCAAAATTATCCAAATATAGTCGTGTTTATACTCATTT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGAAATCTGATAAATCCATTTTTGTTGATTTCTGATTTCCAAAAAAAAAATCTTTAAACTACAGTAACCTCCTGGATTTTGGTCTAAACTTGGAAATTTTAATTTTTATAAATTTGTCATGTTTAGAGCTTCAAAATGAGTATAAACATGGCATGTTTTGAAAAATTTCTAAATTTCGAGGTTAAAGGCGCATGGACCCCTGGAAGAATGAAAATTGAAGAAACTAGGTCATGTTCATACTTATTTTAAAGCTTATGGCACACCAAATACGACATTTTCATTTGACCAAATAAGGACCCATACCTTCGTTGAAATAAATAGATTTAATTAAATTTAAAAAAAACCCGCCAATCTTTTTATGGACCATAAATTTTTCAGTTTTGCTCCAAACGCGATAAAAATTATGTTTTTTGATTTGTCTTGTCGTAAGCTTCAAAACGAGTATAAACACGACATGCTTCCACAAATTTTAAATTTTGACCTTAAAGGCGCATGGTTCAGGGGCAAAAATCAAAATTATCCAAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGAAAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGCCCATACAAAAAAGAAAATGTTGATCTCAAAAATGACGAGAGCTGATGTGAGCAAACTCCAATTAAACAAGTCTCTTGGATCCTCAAATCTTTTATTACTTTTTGGGGAAAAACCTAGATTTTCGAATTCATCATGTTTAGAGCTTTAAAATGAGTATAAACACGGCCCAATTCGGATGATTTTGAAATTTGGCCAAAATTTGGATGGAACATAACTTTTTCAGTGTTGCTTCAAAATTGCTGTAAATTATATTTTTGGATTTGCCTTGTTATGAGCTTTGAAATGAGTATAAACACGACTCAATTCTGAAATATTCGATTTTTGACTTTAAAGGCGCATAGGGGGTAGGTGGAAAATGGTCAAAACTGAAAATCATC</canonical>
            <polymorphic>TCAGAAATCTGATAAATCCATTTTTGTTGATTTCTGATTTCCAAAAAAAAAATCTTTAAACTACAGTAACCTCCTGGATTTTGGTCTAAACTTGGAAATTTTAATTTTTATAAATTTGTCATGTTTAGAGCTTCAAAATGAGTATAAACATGGCATGTTTTGAAAAATTTCTAAATTTCGAGGTTAAAGGCGCATGGACCCCTGGAAGAATGAAAATTGAAGAAACTAGGTCATGTTCATACTTATTTTAAAGCTTATGGCACACCAAATACGACATTTTCATTTGACCAAATAAGGACCCATACCTTCGTTGAAATAAATAGATTTAATTAAATTTAAAAAAAACCCGCCAATCTTTTTATGGACCATAAATTTTTCAGTTTTGCTCCAAACGCGATAAAAATTATGTTTTTTGATTTGTCTTGTCGTAAGCTTCAAAACGAGTATAAACACGACATGCTTCCACAAATTTTAAATTTTGACCTTAAAGGCGCATGGTYCAGGGGCAAAAATCAAAATTATCCAAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGAAAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGCCCATACAAAAAAGAAAATGTTGATCTCAAAAATGACGAGAGCTGATGTGAGCAAACTCCAATTAAACAAGTCTCTTGGATCCTCAAATCTTTTATTACTTTTTGGGGAAAAACCTAGATTTTCGAATTCATCATGTTTAGAGCTTTAAAATGAGTATAAACACGGCCCAATTCGGATGATTTTGAAATTTGGCCAAAATTTGGATGGAACATAACTTTTTCAGTGTTGCTTCAAAATTGCTGTAAATTATATTTTTGGATTTGCCTTGTTATGAGCTTTGAAATGAGTATAAACACGACTCAATTCTGAAATATTCGATTTTTGACTTTAAAGGCGCATAGGGGGTAGGTGGAAAATGGTCAAAACTGAAAATCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTTTGTTGATTTCTGATTTC</pcr_primer_p1>
		<pcr_primer_p2>TCATTTTTGAGATCAACATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>640</pcr_amplicon_size>
		<canonical_amplicon>CATTTTTGTTGATTTCTGATTTCCAAAAAAAAAATCTTTAAACTACAGTAACCTCCTGGATTTTGGTCTAAACTTGGAAATTTTAATTTTTATAAATTTGTCATGTTTAGAGCTTCAAAATGAGTATAAACATGGCATGTTTTGAAAAATTTCTAAATTTCGAGGTTAAAGGCGCATGGACCCCTGGAAGAATGAAAATTGAAGAAACTAGGTCATGTTCATACTTATTTTAAAGCTTATGGCACACCAAATACGACATTTTCATTTGACCAAATAAGGACCCATACCTTCGTTGAAATAAATAGATTTAATTAAATTTAAAAAAAACCCGCCAATCTTTTTATGGACCATAAATTTTTCAGTTTTGCTCCAAACGCGATAAAAATTATGTTTTTTGATTTGTCTTGTCGTAAGCTTCAAAACGAGTATAAACACGACATGCTTCCACAAATTTTAAATTTTGACCTTAAAGGCGCATGGTTCAGGGGCAAAAATCAAAATTATCCAAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGAAAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGCCCATACAAAAAAGAAAATGTTGATCTCAAAAATGA</canonical_amplicon>
		<polymorphic_amplicon>CATTTTTGTTGATTTCTGATTTCCAAAAAAAAAATCTTTAAACTACAGTAACCTCCTGGATTTTGGTCTAAACTTGGAAATTTTAATTTTTATAAATTTGTCATGTTTAGAGCTTCAAAATGAGTATAAACATGGCATGTTTTGAAAAATTTCTAAATTTCGAGGTTAAAGGCGCATGGACCCCTGGAAGAATGAAAATTGAAGAAACTAGGTCATGTTCATACTTATTTTAAAGCTTATGGCACACCAAATACGACATTTTCATTTGACCAAATAAGGACCCATACCTTCGTTGAAATAAATAGATTTAATTAAATTTAAAAAAAACCCGCCAATCTTTTTATGGACCATAAATTTTTCAGTTTTGCTCCAAACGCGATAAAAATTATGTTTTTTGATTTGTCTTGTCGTAAGCTTCAAAACGAGTATAAACACGACATGCTTCCACAAATTTTAAATTTTGACCTTAAAGGCGCATGGTYCAGGGGCAAAAATCAAAATTATCCAAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGAAAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGCCCATACAAAAAAGAAAATGTTGATCTCAAAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33680</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>418285</contig_pos>
        <strand></strand>
        <context>TCAAATcttt[T/C]atwayttttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGATGTGAGCAAACTCCAATTAAACAAGTCTCTTGGATCCTCAAATCTTT</left_flank>
        <right_flank>ATTACTTTTTGGGGAAAAACCTAGATTTTCGAATTCATCATGTTTAGAGC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAGAAACTAGGTCATGTTCATACTTATTTTAAAGCTTATGGCACACCAAATACGACATTTTCATTTGACCAAATAAGGACCCATACCTTCGTTGAAATAAATAGATTTAATTAAATTTAAAAAAAACCCGCCAATCTTTTTATGGACCATAAATTTTTCAGTTTTGCTCCAAACGCGATAAAAATTATGTTTTTTGATTTGTCTTGTCGTAAGCTTCAAAACGAGTATAAACACGACATGCTTCCACAAATTTTAAATTTTGACCTTAAAGGCGCATGGTTCAGGGGCAAAAATCAAAATTATCCAAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGAAAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGCCCATACAAAAAAGAAAATGTTGATCTCAAAAATGACGAGAGCTGATGTGAGCAAACTCCAATTAAACAAGTCTCTTGGATCCTCAAATCTTTTATTACTTTTTGGGGAAAAACCTAGATTTTCGAATTCATCATGTTTAGAGCTTTAAAATGAGTATAAACACGGCCCAATTCGGATGATTTTGAAATTTGGCCAAAATTTGGATGGAACATAACTTTTTCAGTGTTGCTTCAAAATTGCTGTAAATTATATTTTTGGATTTGCCTTGTTATGAGCTTTGAAATGAGTATAAACACGACTCAATTCTGAAATATTCGATTTTTGACTTTAAAGGCGCATAGGGGGTAGGTGGAAAATGGTCAAAACTGAAAATCATCAGAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGACAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGACCATACAAAAAAAAACGGTCGAATTTCAAAGTTGCCCAATTATAGCCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAATGAAATTCAGTGGTACTATTTTCTAAGCCACCAGACG</canonical>
            <polymorphic>TTGAAGAAACTAGGTCATGTTCATACTTATTTTAAAGCTTATGGCACACCAAATACGACATTTTCATTTGACCAAATAAGGACCCATACCTTCGTTGAAATAAATAGATTTAATTAAATTTAAAAAAAACCCGCCAATCTTTTTATGGACCATAAATTTTTCAGTTTTGCTCCAAACGCGATAAAAATTATGTTTTTTGATTTGTCTTGTCGTAAGCTTCAAAACGAGTATAAACACGACATGCTTCCACAAATTTTAAATTTTGACCTTAAAGGCGCATGGTTCAGGGGCAAAAATCAAAATTATCCAAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGAAAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGCCCATACAAAAAAGAAAATGTTGATCTCAAAAATGACGAGAGCTGATGTGAGCAAACTCCAATTAAACAAGTCTCTTGGATCCTCAAATCTTTYATTACTTTTTGGGGAAAAACCTAGATTTTCGAATTCATCATGTTTAGAGCTTTAAAATGAGTATAAACACGGCCCAATTCGGATGATTTTGAAATTTGGCCAAAATTTGGATGGAACATAACTTTTTCAGTGTTGCTTCAAAATTGCTGTAAATTATATTTTTGGATTTGCCTTGTTATGAGCTTTGAAATGAGTATAAACACGACTCAATTCTGAAATATTCGATTTTTGACTTTAAAGGCGCATAGGGGGTAGGTGGAAAATGGTCAAAACTGAAAATCATCAGAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGACAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGACCATACAAAAAAAAACGGTCGAATTTCAAAGTTGCCCAATTATAGCCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAATGAAATTCAGTGGTACTATTTTCTAAGCCACCAGACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCTGATGTGAGCAAACTC</pcr_primer_p1>
		<pcr_primer_p2>ACAATAATACTTTGACGTCTGGT</pcr_primer_p2>
		<pcr_amplicon_size>570</pcr_amplicon_size>
		<canonical_amplicon>GAGCTGATGTGAGCAAACTCCAATTAAACAAGTCTCTTGGATCCTCAAATCTTTTATTACTTTTTGGGGAAAAACCT</canonical_amplicon>
		<polymorphic_amplicon>GAGCTGATGTGAGCAAACTCCAATTAAACAAGTCTCTTGGATCCTCAAATCTTTYATTACTTTTTGGGGAAAAACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33681</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>418288</contig_pos>
        <strand></strand>
        <context>AATctttyat[T/A]aytttttggg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGTGAGCAAACTCCAATTAAACAAGTCTCTTGGATCCTCAAATCTTTTAT</left_flank>
        <right_flank>ACTTTTTGGGGAAAAACCTAGATTTTCGAATTCATCATGTTTAGAGCTTT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAACTAGGTCATGTTCATACTTATTTTAAAGCTTATGGCACACCAAATACGACATTTTCATTTGACCAAATAAGGACCCATACCTTCGTTGAAATAAATAGATTTAATTAAATTTAAAAAAAACCCGCCAATCTTTTTATGGACCATAAATTTTTCAGTTTTGCTCCAAACGCGATAAAAATTATGTTTTTTGATTTGTCTTGTCGTAAGCTTCAAAACGAGTATAAACACGACATGCTTCCACAAATTTTAAATTTTGACCTTAAAGGCGCATGGTTCAGGGGCAAAAATCAAAATTATCCAAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGAAAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGCCCATACAAAAAAGAAAATGTTGATCTCAAAAATGACGAGAGCTGATGTGAGCAAACTCCAATTAAACAAGTCTCTTGGATCCTCAAATCTTTTATTACTTTTTGGGGAAAAACCTAGATTTTCGAATTCATCATGTTTAGAGCTTTAAAATGAGTATAAACACGGCCCAATTCGGATGATTTTGAAATTTGGCCAAAATTTGGATGGAACATAACTTTTTCAGTGTTGCTTCAAAATTGCTGTAAATTATATTTTTGGATTTGCCTTGTTATGAGCTTTGAAATGAGTATAAACACGACTCAATTCTGAAATATTCGATTTTTGACTTTAAAGGCGCATAGGGGGTAGGTGGAAAATGGTCAAAACTGAAAATCATCAGAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGACAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGACCATACAAAAAAAAACGGTCGAATTTCAAAGTTGCCCAATTATAGCCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAATGAAATTCAGTGGTACTATTTTCTAAGCCACCAGACGTCA</canonical>
            <polymorphic>AAGAAACTAGGTCATGTTCATACTTATTTTAAAGCTTATGGCACACCAAATACGACATTTTCATTTGACCAAATAAGGACCCATACCTTCGTTGAAATAAATAGATTTAATTAAATTTAAAAAAAACCCGCCAATCTTTTTATGGACCATAAATTTTTCAGTTTTGCTCCAAACGCGATAAAAATTATGTTTTTTGATTTGTCTTGTCGTAAGCTTCAAAACGAGTATAAACACGACATGCTTCCACAAATTTTAAATTTTGACCTTAAAGGCGCATGGTTCAGGGGCAAAAATCAAAATTATCCAAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGAAAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGCCCATACAAAAAAGAAAATGTTGATCTCAAAAATGACGAGAGCTGATGTGAGCAAACTCCAATTAAACAAGTCTCTTGGATCCTCAAATCTTTTATWACTTTTTGGGGAAAAACCTAGATTTTCGAATTCATCATGTTTAGAGCTTTAAAATGAGTATAAACACGGCCCAATTCGGATGATTTTGAAATTTGGCCAAAATTTGGATGGAACATAACTTTTTCAGTGTTGCTTCAAAATTGCTGTAAATTATATTTTTGGATTTGCCTTGTTATGAGCTTTGAAATGAGTATAAACACGACTCAATTCTGAAATATTCGATTTTTGACTTTAAAGGCGCATAGGGGGTAGGTGGAAAATGGTCAAAACTGAAAATCATCAGAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGACAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGACCATACAAAAAAAAACGGTCGAATTTCAAAGTTGCCCAATTATAGCCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAATGAAATTCAGTGGTACTATTTTCTAAGCCACCAGACGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGAGCAAACTCCAATTAAA</pcr_primer_p1>
		<pcr_primer_p2>ACAATAATACTTTGACGTCTGGT</pcr_primer_p2>
		<pcr_amplicon_size>563</pcr_amplicon_size>
		<canonical_amplicon>TGTGAGCAAACTCCAATTAAACAAGTCTCTTGGATCCTCAAATCTTTTATTACTTTTTGGGGAAAAACCTAGA</canonical_amplicon>
		<polymorphic_amplicon>TGTGAGCAAACTCCAATTAAACAAGTCTCTTGGATCCTCAAATCTTTTATWACTTTTTGGGGAAAAACCTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33682</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>418290</contig_pos>
        <strand></strand>
        <context>Tctttyatwa[C/T]tttttgggga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAGCAAACTCCAATTAAACAAGTCTCTTGGATCCTCAAATCTTTTATTA</left_flank>
        <right_flank>TTTTTGGGGAAAAACCTAGATTTTCGAATTCATCATGTTTAGAGCTTTAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAACTAGGTCATGTTCATACTTATTTTAAAGCTTATGGCACACCAAATACGACATTTTCATTTGACCAAATAAGGACCCATACCTTCGTTGAAATAAATAGATTTAATTAAATTTAAAAAAAACCCGCCAATCTTTTTATGGACCATAAATTTTTCAGTTTTGCTCCAAACGCGATAAAAATTATGTTTTTTGATTTGTCTTGTCGTAAGCTTCAAAACGAGTATAAACACGACATGCTTCCACAAATTTTAAATTTTGACCTTAAAGGCGCATGGTTCAGGGGCAAAAATCAAAATTATCCAAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGAAAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGCCCATACAAAAAAGAAAATGTTGATCTCAAAAATGACGAGAGCTGATGTGAGCAAACTCCAATTAAACAAGTCTCTTGGATCCTCAAATCTTTTATTACTTTTTGGGGAAAAACCTAGATTTTCGAATTCATCATGTTTAGAGCTTTAAAATGAGTATAAACACGGCCCAATTCGGATGATTTTGAAATTTGGCCAAAATTTGGATGGAACATAACTTTTTCAGTGTTGCTTCAAAATTGCTGTAAATTATATTTTTGGATTTGCCTTGTTATGAGCTTTGAAATGAGTATAAACACGACTCAATTCTGAAATATTCGATTTTTGACTTTAAAGGCGCATAGGGGGTAGGTGGAAAATGGTCAAAACTGAAAATCATCAGAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGACAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGACCATACAAAAAAAAACGGTCGAATTTCAAAGTTGCCCAATTATAGCCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAATGAAATTCAGTGGTACTATTTTCTAAGCCACCAGACGTCAAA</canonical>
            <polymorphic>GAAACTAGGTCATGTTCATACTTATTTTAAAGCTTATGGCACACCAAATACGACATTTTCATTTGACCAAATAAGGACCCATACCTTCGTTGAAATAAATAGATTTAATTAAATTTAAAAAAAACCCGCCAATCTTTTTATGGACCATAAATTTTTCAGTTTTGCTCCAAACGCGATAAAAATTATGTTTTTTGATTTGTCTTGTCGTAAGCTTCAAAACGAGTATAAACACGACATGCTTCCACAAATTTTAAATTTTGACCTTAAAGGCGCATGGTTCAGGGGCAAAAATCAAAATTATCCAAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGAAAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGCCCATACAAAAAAGAAAATGTTGATCTCAAAAATGACGAGAGCTGATGTGAGCAAACTCCAATTAAACAAGTCTCTTGGATCCTCAAATCTTTTATTAYTTTTTGGGGAAAAACCTAGATTTTCGAATTCATCATGTTTAGAGCTTTAAAATGAGTATAAACACGGCCCAATTCGGATGATTTTGAAATTTGGCCAAAATTTGGATGGAACATAACTTTTTCAGTGTTGCTTCAAAATTGCTGTAAATTATATTTTTGGATTTGCCTTGTTATGAGCTTTGAAATGAGTATAAACACGACTCAATTCTGAAATATTCGATTTTTGACTTTAAAGGCGCATAGGGGGTAGGTGGAAAATGGTCAAAACTGAAAATCATCAGAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGACAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGACCATACAAAAAAAAACGGTCGAATTTCAAAGTTGCCCAATTATAGCCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAATGAAATTCAGTGGTACTATTTTCTAAGCCACCAGACGTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGCAAACTCCAATTAAACA</pcr_primer_p1>
		<pcr_primer_p2>ACAATAATACTTTGACGTCTGGT</pcr_primer_p2>
		<pcr_amplicon_size>561</pcr_amplicon_size>
		<canonical_amplicon>TGAGCAAACTCCAATTAAACAAGTCTCTTGGATCCTCAAATCTTTTATTACTTTTTGGGGAAAAACCTAGATT</canonical_amplicon>
		<polymorphic_amplicon>TGAGCAAACTCCAATTAAACAAGTCTCTTGGATCCTCAAATCTTTTATTAYTTTTTGGGGAAAAACCTAGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33683</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>418308</contig_pos>
        <strand></strand>
        <context>ggaaaaacct[A/G]gattttcgaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAAGTCTCTTGGATCCTCAAATCTTTTATTACTTTTTGGGGAAAAACCT</left_flank>
        <right_flank>GATTTTCGAATTCATCATGTTTAGAGCTTTAAAATGAGTATAAACACGGC</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTTATTTTAAAGCTTATGGCACACCAAATACGACATTTTCATTTGACCAAATAAGGACCCATACCTTCGTTGAAATAAATAGATTTAATTAAATTTAAAAAAAACCCGCCAATCTTTTTATGGACCATAAATTTTTCAGTTTTGCTCCAAACGCGATAAAAATTATGTTTTTTGATTTGTCTTGTCGTAAGCTTCAAAACGAGTATAAACACGACATGCTTCCACAAATTTTAAATTTTGACCTTAAAGGCGCATGGTTCAGGGGCAAAAATCAAAATTATCCAAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGAAAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGCCCATACAAAAAAGAAAATGTTGATCTCAAAAATGACGAGAGCTGATGTGAGCAAACTCCAATTAAACAAGTCTCTTGGATCCTCAAATCTTTTATTACTTTTTGGGGAAAAACCTAGATTTTCGAATTCATCATGTTTAGAGCTTTAAAATGAGTATAAACACGGCCCAATTCGGATGATTTTGAAATTTGGCCAAAATTTGGATGGAACATAACTTTTTCAGTGTTGCTTCAAAATTGCTGTAAATTATATTTTTGGATTTGCCTTGTTATGAGCTTTGAAATGAGTATAAACACGACTCAATTCTGAAATATTCGATTTTTGACTTTAAAGGCGCATAGGGGGTAGGTGGAAAATGGTCAAAACTGAAAATCATCAGAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGACAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGACCATACAAAAAAAAACGGTCGAATTTCAAAGTTGCCCAATTATAGCCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAATGAAATTCAGTGGTACTATTTTCTAAGCCACCAGACGTCAAAGTATTATTGTTGTTGATT</canonical>
            <polymorphic>TACTTATTTTAAAGCTTATGGCACACCAAATACGACATTTTCATTTGACCAAATAAGGACCCATACCTTCGTTGAAATAAATAGATTTAATTAAATTTAAAAAAAACCCGCCAATCTTTTTATGGACCATAAATTTTTCAGTTTTGCTCCAAACGCGATAAAAATTATGTTTTTTGATTTGTCTTGTCGTAAGCTTCAAAACGAGTATAAACACGACATGCTTCCACAAATTTTAAATTTTGACCTTAAAGGCGCATGGTTCAGGGGCAAAAATCAAAATTATCCAAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGAAAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGCCCATACAAAAAAGAAAATGTTGATCTCAAAAATGACGAGAGCTGATGTGAGCAAACTCCAATTAAACAAGTCTCTTGGATCCTCAAATCTTTTATTACTTTTTGGGGAAAAACCTRGATTTTCGAATTCATCATGTTTAGAGCTTTAAAATGAGTATAAACACGGCCCAATTCGGATGATTTTGAAATTTGGCCAAAATTTGGATGGAACATAACTTTTTCAGTGTTGCTTCAAAATTGCTGTAAATTATATTTTTGGATTTGCCTTGTTATGAGCTTTGAAATGAGTATAAACACGACTCAATTCTGAAATATTCGATTTTTGACTTTAAAGGCGCATAGGGGGTAGGTGGAAAATGGTCAAAACTGAAAATCATCAGAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGACAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGACCATACAAAAAAAAACGGTCGAATTTCAAAGTTGCCCAATTATAGCCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAATGAAATTCAGTGGTACTATTTTCTAAGCCACCAGACGTCAAAGTATTATTGTTGTTGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>324 303 199 174</canonical_bands>
                <polymorphic_bands>477 324 199</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGTCTCTTGGATCCTCAA</pcr_primer_p1>
		<pcr_primer_p2>ACAATAATACTTTGACGTCTGGT</pcr_primer_p2>
		<pcr_amplicon_size>542</pcr_amplicon_size>
		<canonical_amplicon>CAAGTCTCTTGGATCCTCAAATCTTTTATTACTTTTTGGGGAAAAACCTAGATTTTCGAATTCATCATGTTTAGAGCTTTAAAATGAGTATAAACACGGCCCAATTCGGATGATTTTGAAATTTGGCCAAAATTTGGATGGAACATAACTTTTTCAGTGTTGCTTCAAAATTGCTGTAAATTATATTTTTGGATTTGCCTTGTTATGAGCTTTGAAATGAGTATAAACACGACTCAATTCTGAAATATTCGATTTTTGACTTTAAAGGCGCATAGGGGGTAGGTGGAAAATGGTCAAAACTGAAAATCATCAGAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGACAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGACCATACAAAAAAAAACGGTCGAATTTCAAAGTTGCCCAATTATAGCCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAATGAAATTCAGTGGTACTATTTTCTAAGCCACCAGACGTCAAAGTATTATTGT</canonical_amplicon>
		<polymorphic_amplicon>CAAGTCTCTTGGATCCTCAAATCTTTTATTACTTTTTGGGGAAAAACCTRGATTTTCGAATTCATCATGTTTAGAGCTTTAAAATGAGTATAAACACGGCCCAATTCGGATGATTTTGAAATTTGGCCAAAATTTGGATGGAACATAACTTTTTCAGTGTTGCTTCAAAATTGCTGTAAATTATATTTTTGGATTTGCCTTGTTATGAGCTTTGAAATGAGTATAAACACGACTCAATTCTGAAATATTCGATTTTTGACTTTAAAGGCGCATAGGGGGTAGGTGGAAAATGGTCAAAACTGAAAATCATCAGAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGACAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGACCATACAAAAAAAAACGGTCGAATTTCAAAGTTGCCCAATTATAGCCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAATGAAATTCAGTGGTACTATTTTCTAAGCCACCAGACGTCAAAGTATTATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33684</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>418322</contig_pos>
        <strand></strand>
        <context>tttcgaattc[A/C]tcatgtttag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCTCAAATCTTTTATTACTTTTTGGGGAAAAACCTAGATTTTCGAATTC</left_flank>
        <right_flank>TCATGTTTAGAGCTTTAAAATGAGTATAAACACGGCCCAATTCGGATGAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTATGGCACACCAAATACGACATTTTCATTTGACCAAATAAGGACCCATACCTTCGTTGAAATAAATAGATTTAATTAAATTTAAAAAAAACCCGCCAATCTTTTTATGGACCATAAATTTTTCAGTTTTGCTCCAAACGCGATAAAAATTATGTTTTTTGATTTGTCTTGTCGTAAGCTTCAAAACGAGTATAAACACGACATGCTTCCACAAATTTTAAATTTTGACCTTAAAGGCGCATGGTTCAGGGGCAAAAATCAAAATTATCCAAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGAAAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGCCCATACAAAAAAGAAAATGTTGATCTCAAAAATGACGAGAGCTGATGTGAGCAAACTCCAATTAAACAAGTCTCTTGGATCCTCAAATCTTTTATTACTTTTTGGGGAAAAACCTAGATTTTCGAATTCATCATGTTTAGAGCTTTAAAATGAGTATAAACACGGCCCAATTCGGATGATTTTGAAATTTGGCCAAAATTTGGATGGAACATAACTTTTTCAGTGTTGCTTCAAAATTGCTGTAAATTATATTTTTGGATTTGCCTTGTTATGAGCTTTGAAATGAGTATAAACACGACTCAATTCTGAAATATTCGATTTTTGACTTTAAAGGCGCATAGGGGGTAGGTGGAAAATGGTCAAAACTGAAAATCATCAGAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGACAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGACCATACAAAAAAAAACGGTCGAATTTCAAAGTTGCCCAATTATAGCCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAATGAAATTCAGTGGTACTATTTTCTAAGCCACCAGACGTCAAAGTATTATTGTTGTTGATTACGTGTCTATATTG</canonical>
            <polymorphic>CTTATGGCACACCAAATACGACATTTTCATTTGACCAAATAAGGACCCATACCTTCGTTGAAATAAATAGATTTAATTAAATTTAAAAAAAACCCGCCAATCTTTTTATGGACCATAAATTTTTCAGTTTTGCTCCAAACGCGATAAAAATTATGTTTTTTGATTTGTCTTGTCGTAAGCTTCAAAACGAGTATAAACACGACATGCTTCCACAAATTTTAAATTTTGACCTTAAAGGCGCATGGTTCAGGGGCAAAAATCAAAATTATCCAAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGAAAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGCCCATACAAAAAAGAAAATGTTGATCTCAAAAATGACGAGAGCTGATGTGAGCAAACTCCAATTAAACAAGTCTCTTGGATCCTCAAATCTTTTATTACTTTTTGGGGAAAAACCTAGATTTTCGAATTCMTCATGTTTAGAGCTTTAAAATGAGTATAAACACGGCCCAATTCGGATGATTTTGAAATTTGGCCAAAATTTGGATGGAACATAACTTTTTCAGTGTTGCTTCAAAATTGCTGTAAATTATATTTTTGGATTTGCCTTGTTATGAGCTTTGAAATGAGTATAAACACGACTCAATTCTGAAATATTCGATTTTTGACTTTAAAGGCGCATAGGGGGTAGGTGGAAAATGGTCAAAACTGAAAATCATCAGAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGACAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGACCATACAAAAAAAAACGGTCGAATTTCAAAGTTGCCCAATTATAGCCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAATGAAATTCAGTGGTACTATTTTCTAAGCCACCAGACGTCAAAGTATTATTGTTGTTGATTACGTGTCTATATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCTCTTGGATCCTCAAAT</pcr_primer_p1>
		<pcr_primer_p2>ACAATAATACTTTGACGTCTGGT</pcr_primer_p2>
		<pcr_amplicon_size>541</pcr_amplicon_size>
		<canonical_amplicon>AAGTCTCTTGGATCCTCAAATCTTTTATTACTTTTTGGGGAAAAACCTAGATTTTCGAATTCATCATGTTTAGAGCTTTAAAATGAGTATAAACACGGCCCAATTCGGATGATTTTGAAATTTGGCCAAAATTTGGATGGAACATAACTTTTTCAGTGTTGCTTCAAAATTGCTGTAAATTATATTTTTGGATTTGCCTTGTTATGAGCTTTGAAATGAGTATAAACACGACTCAATTCTGAAATATTCGATTTTTGACTTTAAAGGCGCATAGGGGGTAGGTGGAAAATGGTCAAAACTGAAAATCATCAGAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGACAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGACCATACAAAAAAAAACGGTCGAATTTCAAAGTTGCCCAATTATAGCCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAATGAAATTCAGTGGTACTATTTTCTAAGCCACCAGACGTCAAAGTATTATTGT</canonical_amplicon>
		<polymorphic_amplicon>AAGTCTCTTGGATCCTCAAATCTTTTATTACTTTTTGGGGAAAAACCTAGATTTTCGAATTCMTCATGTTTAGAGCTTTAAAATGAGTATAAACACGGCCCAATTCGGATGATTTTGAAATTTGGCCAAAATTTGGATGGAACATAACTTTTTCAGTGTTGCTTCAAAATTGCTGTAAATTATATTTTTGGATTTGCCTTGTTATGAGCTTTGAAATGAGTATAAACACGACTCAATTCTGAAATATTCGATTTTTGACTTTAAAGGCGCATAGGGGGTAGGTGGAAAATGGTCAAAACTGAAAATCATCAGAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGACAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGACCATACAAAAAAAAACGGTCGAATTTCAAAGTTGCCCAATTATAGCCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAATGAAATTCAGTGGTACTATTTTCTAAGCCACCAGACGTCAAAGTATTATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33685</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>418380</contig_pos>
        <strand></strand>
        <context>gattttgaaa[T/C]ttggccaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAGAGCTTTAAAATGAGTATAAACACGGCCCAATTCGGATGATTTTGAAA</left_flank>
        <right_flank>TTGGCCAAAATTTGGATGGAACATAACTTTTTCAGTGTTGCTTCAAAATT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAATAAATAGATTTAATTAAATTTAAAAAAAACCCGCCAATCTTTTTATGGACCATAAATTTTTCAGTTTTGCTCCAAACGCGATAAAAATTATGTTTTTTGATTTGTCTTGTCGTAAGCTTCAAAACGAGTATAAACACGACATGCTTCCACAAATTTTAAATTTTGACCTTAAAGGCGCATGGTTCAGGGGCAAAAATCAAAATTATCCAAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGAAAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGCCCATACAAAAAAGAAAATGTTGATCTCAAAAATGACGAGAGCTGATGTGAGCAAACTCCAATTAAACAAGTCTCTTGGATCCTCAAATCTTTTATTACTTTTTGGGGAAAAACCTAGATTTTCGAATTCATCATGTTTAGAGCTTTAAAATGAGTATAAACACGGCCCAATTCGGATGATTTTGAAATTTGGCCAAAATTTGGATGGAACATAACTTTTTCAGTGTTGCTTCAAAATTGCTGTAAATTATATTTTTGGATTTGCCTTGTTATGAGCTTTGAAATGAGTATAAACACGACTCAATTCTGAAATATTCGATTTTTGACTTTAAAGGCGCATAGGGGGTAGGTGGAAAATGGTCAAAACTGAAAATCATCAGAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGACAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGACCATACAAAAAAAAACGGTCGAATTTCAAAGTTGCCCAATTATAGCCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAATGAAATTCAGTGGTACTATTTTCTAAGCCACCAGACGTCAAAGTATTATTGTTGTTGATTACGTGTCTATATTGATGTCTGTGTCTGCACTCTCCAAATCTCTTTTTTTTCAATTTATATATTTTTTTTCGT</canonical>
            <polymorphic>TGAAATAAATAGATTTAATTAAATTTAAAAAAAACCCGCCAATCTTTTTATGGACCATAAATTTTTCAGTTTTGCTCCAAACGCGATAAAAATTATGTTTTTTGATTTGTCTTGTCGTAAGCTTCAAAACGAGTATAAACACGACATGCTTCCACAAATTTTAAATTTTGACCTTAAAGGCGCATGGTTCAGGGGCAAAAATCAAAATTATCCAAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGAAAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGCCCATACAAAAAAGAAAATGTTGATCTCAAAAATGACGAGAGCTGATGTGAGCAAACTCCAATTAAACAAGTCTCTTGGATCCTCAAATCTTTTATTACTTTTTGGGGAAAAACCTAGATTTTCGAATTCATCATGTTTAGAGCTTTAAAATGAGTATAAACACGGCCCAATTCGGATGATTTTGAAAYTTGGCCAAAATTTGGATGGAACATAACTTTTTCAGTGTTGCTTCAAAATTGCTGTAAATTATATTTTTGGATTTGCCTTGTTATGAGCTTTGAAATGAGTATAAACACGACTCAATTCTGAAATATTCGATTTTTGACTTTAAAGGCGCATAGGGGGTAGGTGGAAAATGGTCAAAACTGAAAATCATCAGAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGACAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGACCATACAAAAAAAAACGGTCGAATTTCAAAGTTGCCCAATTATAGCCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAATGAAATTCAGTGGTACTATTTTCTAAGCCACCAGACGTCAAAGTATTATTGTTGTTGATTACGTGTCTATATTGATGTCTGTGTCTGCACTCTCCAAATCTCTTTTTTTTCAATTTATATATTTTTTTTCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>227 178 129 97 95 75 61 61 38 21 11 7</canonical_bands>
                <polymorphic_bands>227 178 129 97 95 75 72 61 38 21 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>122 108 77 66 65 57 53 45 44 42 39 38 38 31 21 17 16 16 15 15 13 13 11 10 8 8 7 5</canonical_bands>
                <polymorphic_bands>122 108 77 66 65 57 53 45 44 42 39 38 38 31 28 21 16 16 15 15 13 13 10 8 8 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTCTCTTGGATCCTCAAAT</pcr_primer_p1>
		<pcr_primer_p2>ACAATAATACTTTGACGTCTGGT</pcr_primer_p2>
		<pcr_amplicon_size>541</pcr_amplicon_size>
		<canonical_amplicon>AAGTCTCTTGGATCCTCAAATCTTTTATTACTTTTTGGGGAAAAACCTAGATTTTCGAATTCATCATGTTTAGAGCTTTAAAATGAGTATAAACACGGCCCAATTCGGATGATTTTGAAATTTGGCCAAAATTTGGATGGAACATAACTTTTTCAGTGTTGCTTCAAAATTGCTGTAAATTATATTTTTGGATTTGCCTTGTTATGAGCTTTGAAATGAGTATAAACACGACTCAATTCTGAAATATTCGATTTTTGACTTTAAAGGCGCATAGGGGGTAGGTGGAAAATGGTCAAAACTGAAAATCATCAGAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGACAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGACCATACAAAAAAAAACGGTCGAATTTCAAAGTTGCCCAATTATAGCCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAATGAAATTCAGTGGTACTATTTTCTAAGCCACCAGACGTCAAAGTATTATTGT</canonical_amplicon>
		<polymorphic_amplicon>AAGTCTCTTGGATCCTCAAATCTTTTATTACTTTTTGGGGAAAAACCTAGATTTTCGAATTCATCATGTTTAGAGCTTTAAAATGAGTATAAACACGGCCCAATTCGGATGATTTTGAAAYTTGGCCAAAATTTGGATGGAACATAACTTTTTCAGTGTTGCTTCAAAATTGCTGTAAATTATATTTTTGGATTTGCCTTGTTATGAGCTTTGAAATGAGTATAAACACGACTCAATTCTGAAATATTCGATTTTTGACTTTAAAGGCGCATAGGGGGTAGGTGGAAAATGGTCAAAACTGAAAATCATCAGAATATAGTCGTGTTTATACTCATTTTGAAGCTCATGACTAGACAAATTCAAAAATTAAAGTTTCATCAATTTTTGAGCAAAATTACAAAAGTTAGGGACCATACAAAAAAAAACGGTCGAATTTCAAAGTTGCCCAATTATAGCCGTGTTTAGGCTCATTTTGAAGCTCTCAACAAATGAAATTCAGTGGTACTATTTTCTAAGCCACCAGACGTCAAAGTATTATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33686</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>436696</contig_pos>
        <strand></strand>
        <context>AAaaatttgc[A/T]aaaatctcat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGCCCTTTTCCGGGTCCAAAGATTTGCAATTTCTCAAAAAAAAATTTGC</left_flank>
        <right_flank>AAAATCTCATTTTTAAGCCAAGTTACACTAATTTTAAGATTGGTGGCCTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAACAGGCCTAACAAAGTGATATCCAACATGGCCTAGGATTCATAAAATTTGGTTTTCTAGGCCACCAACTTTAAAGAGGCTTAACTCGCTTCAAAATTGGTACTTTTGAAATCTGAAAACTGGATAAAAATTTCCAGACAAAGTTCAACACAATGATATAGAATATGGCTTAGATTTTCATAATTCTCAATTTTCAGATTTTTAGACCTTCAAATTGTTGGAAACAATTTTTCTGAATTCACCCAAAGTGTCCCAAGAAAAGATGTTCCATAACTCAGTTTTATAGAATTTCATTTCAGCAAGAATGTATCTTTTTTCGGGGAACTTTTCGGAAAAAAGAATGACAACTTCCGTTTTATTTGAAATCGATCCCTTTTCCACAATTTTTTTCTGCTTCCTCGTTTTTCCGAAAAAAAAAAACGTCACTCTGAAAATTGACCTTTTGCTCTGCCCTTTTCCGGGTCCAAAGATTTGCAATTTCTCAAAAAAAAATTTGCAAAAATCTCATTTTTAAGCCAAGTTACACTAATTTTAAGATTGGTGGCCTAGAAAACCAAGTTTTTGGAAAACTAGGCCATGTTGGGTATCGTTCTGTTTGGCATGCTTTGTTGGACAGAACGCAGTTTATAGATATTTGAAATATTAATTTTGAAGCGAGTTATGGCGGTTTAAAGTTGATGGCCTAGAAAACCAAACCTAGGCCATCGTGGTTAAATATTAAATTGGCTATAACTCGGCTCAAAATTCATATTTTTGAATTCTGAAAAGTGCATTACTGTCAATATGACTTCGACAATTTTTTCGGTATAATGATGGCCTAGATTTCTCAAATTTTGGATTTCTAGGCCACCAACCTTCAAATGGGCATAACTCGCCTCAAAATAGGTATTCTTGAGATTTGAAAAGTGCATGCAAGATAGGAAAAATTGACGAACAAATTGATATGCAAAACAAAACAGCAGAAACTCCAAAAATTGCATTAAAATGCGAAAATGAAA</canonical>
            <polymorphic>AGAACAGGCCTAACAAAGTGATATCCAACATGGCCTAGGATTCATAAAATTTGGTTTTCTAGGCCACCAACTTTAAAGAGGCTTAACTCGCTTCAAAATTGGTACTTTTGAAATCTGAAAACTGGATAAAAATTTCCAGACAAAGTTCAACACAATGATATAGAATATGGCTTAGATTTTCATAATTCTCAATTTTCAGATTTTTAGACCTTCAAATTGTTGGAAACAATTTTTCTGAATTCACCCAAAGTGTCCCAAGAAAAGATGTTCCATAACTCAGTTTTATAGAATTTCATTTCAGCAAGAATGTATCTTTTTTCGGGGAACTTTTCGGAAAAAAGAATGACAACTTCCGTTTTATTTGAAATCGATCCCTTTTCCACAATTTTTTTCTGCTTCCTCGTTTTTCCGAAAAAAAAAAACGTCACTCTGAAAATTGACCTTTTGCTCTGCCCTTTTCCGGGTCCAAAGATTTGCAATTTCTCAAAAAAAAATTTGCWAAAATCTCATTTTTAAGCCAAGTTACACTAATTTTAAGATTGGTGGCCTAGAAAACCAAGTTTTTGGAAAACTAGGCCATGTTGGGTATCGTTCTGTTTGGCATGCTTTGTTGGACAGAACGCAGTTTATAGATATTTGAAATATTAATTTTGAAGCGAGTTATGGCGGTTTAAAGTTGATGGCCTAGAAAACCAAACCTAGGCCATCGTGGTTAAATATTAAATTGGCTATAACTCGGCTCAAAATTCATATTTTTGAATTCTGAAAAGTGCATTACTGTCAATATGACTTCGACAATTTTTTCGGTATAATGATGGCCTAGATTTCTCAAATTTTGGATTTCTAGGCCACCAACCTTCAAATGGGCATAACTCGCCTCAAAATAGGTATTCTTGAGATTTGAAAAGTGCATGCAAGATAGGAAAAATTGACGAACAAATTGATATGCAAAACAAAACAGCAGAAACTCCAAAAATTGCATTAAAATGCGAAAATGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>476 274 138 34 31 22 21 4</canonical_bands>
                <polymorphic_bands>476 296 138 34 31 21 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACGTCACTCTGAAAATTG</pcr_primer_p1>
		<pcr_primer_p2>TTCGTCAATTTTTCCTATCTTG</pcr_primer_p2>
		<pcr_amplicon_size>519</pcr_amplicon_size>
		<canonical_amplicon>AAAAACGTCACTCTGAAAATTGACCTTTTGCTCTGCCCTTTTCCGGGTCCAAAGATTTGCAATTTCTCAAAAAAAAATTTGCAAAAATCTCATTTTTAAGCCAAGTTACACTAATTTTAAGATTGGTGGCCTAGAAAACCAAGTTTTTGGAAAACTAGGCCATGTTGGGTATCGTTCTGTTTGGCATGCTTTGTTGGACAGAACGCAGTTTATAGATATTTGAAATATTAATTTTGAAGCGAGTTATGGCGGTTTAAAGTTGATGGCCTAGAAAACCAAACCTAGGCCATCGTGGTTAAATATTAAATTGGCTATAACTCGGCTCAAAATTCATATTTTTGAATTCTGAAAAGTGCATTACTGTCAATATGACTTCGACAATTTTTTCGGTATAATGATGGCCTAGATTTCTCAAATTTTGGATTTCTAGGCCACCAACCTTCAAATGGGCATAACTCGCCTCAAAATAGGTATTCTTGAGATTTGAAAAGTGCATGCAAGATAGGAAAAATTGACGAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAACGTCACTCTGAAAATTGACCTTTTGCTCTGCCCTTTTCCGGGTCCAAAGATTTGCAATTTCTCAAAAAAAAATTTGCWAAAATCTCATTTTTAAGCCAAGTTACACTAATTTTAAGATTGGTGGCCTAGAAAACCAAGTTTTTGGAAAACTAGGCCATGTTGGGTATCGTTCTGTTTGGCATGCTTTGTTGGACAGAACGCAGTTTATAGATATTTGAAATATTAATTTTGAAGCGAGTTATGGCGGTTTAAAGTTGATGGCCTAGAAAACCAAACCTAGGCCATCGTGGTTAAATATTAAATTGGCTATAACTCGGCTCAAAATTCATATTTTTGAATTCTGAAAAGTGCATTACTGTCAATATGACTTCGACAATTTTTTCGGTATAATGATGGCCTAGATTTCTCAAATTTTGGATTTCTAGGCCACCAACCTTCAAATGGGCATAACTCGCCTCAAAATAGGTATTCTTGAGATTTGAAAAGTGCATGCAAGATAGGAAAAATTGACGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33687</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>436980</contig_pos>
        <strand></strand>
        <context>attactgtca[A/G]tatgacttcg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTCGGCTCAAAATTCATATTTTTGAATTCTGAAAAGTGCATTACTGTCA</left_flank>
        <right_flank>TATGACTTCGACAATTTTTTCGGTATAATGATGGCCTAGATTTCTCAAAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGAATTTCATTTCAGCAAGAATGTATCTTTTTTCGGGGAACTTTTCGGAAAAAAGAATGACAACTTCCGTTTTATTTGAAATCGATCCCTTTTCCACAATTTTTTTCTGCTTCCTCGTTTTTCCGAAAAAAAAAAACGTCACTCTGAAAATTGACCTTTTGCTCTGCCCTTTTCCGGGTCCAAAGATTTGCAATTTCTCAAAAAAAAATTTGCAAAAATCTCATTTTTAAGCCAAGTTACACTAATTTTAAGATTGGTGGCCTAGAAAACCAAGTTTTTGGAAAACTAGGCCATGTTGGGTATCGTTCTGTTTGGCATGCTTTGTTGGACAGAACGCAGTTTATAGATATTTGAAATATTAATTTTGAAGCGAGTTATGGCGGTTTAAAGTTGATGGCCTAGAAAACCAAACCTAGGCCATCGTGGTTAAATATTAAATTGGCTATAACTCGGCTCAAAATTCATATTTTTGAATTCTGAAAAGTGCATTACTGTCAATATGACTTCGACAATTTTTTCGGTATAATGATGGCCTAGATTTCTCAAATTTTGGATTTCTAGGCCACCAACCTTCAAATGGGCATAACTCGCCTCAAAATAGGTATTCTTGAGATTTGAAAAGTGCATGCAAGATAGGAAAAATTGACGAACAAATTGATATGCAAAACAAAACAGCAGAAACTCCAAAAATTGCATTAAAATGCGAAAATGAAATTATAACGGCTCTAAATTGGTGTTTGCGGACCACACACCAGATTTTACGACACTTTACTAAAATTGCCTGAAAACCACTAGTCAGGGGTGAAAAACATCGCTAAATTCGAAAATCGCGTTTTTAATTGGTGTTTGCGTACCCAAACATCGGATTTTACGACAATTTCTCAAAATTGCGTGCTGCCCACCAAAGTTGACGAAAAATGGCTCAAAATAGCTGAAAATTAGGTTTTTTATTGGTGAAAAAATGTGTAAAACTAGTTTTTGATGTCAAATTCTCAAAA</canonical>
            <polymorphic>ATAGAATTTCATTTCAGCAAGAATGTATCTTTTTTCGGGGAACTTTTCGGAAAAAAGAATGACAACTTCCGTTTTATTTGAAATCGATCCCTTTTCCACAATTTTTTTCTGCTTCCTCGTTTTTCCGAAAAAAAAAAACGTCACTCTGAAAATTGACCTTTTGCTCTGCCCTTTTCCGGGTCCAAAGATTTGCAATTTCTCAAAAAAAAATTTGCAAAAATCTCATTTTTAAGCCAAGTTACACTAATTTTAAGATTGGTGGCCTAGAAAACCAAGTTTTTGGAAAACTAGGCCATGTTGGGTATCGTTCTGTTTGGCATGCTTTGTTGGACAGAACGCAGTTTATAGATATTTGAAATATTAATTTTGAAGCGAGTTATGGCGGTTTAAAGTTGATGGCCTAGAAAACCAAACCTAGGCCATCGTGGTTAAATATTAAATTGGCTATAACTCGGCTCAAAATTCATATTTTTGAATTCTGAAAAGTGCATTACTGTCARTATGACTTCGACAATTTTTTCGGTATAATGATGGCCTAGATTTCTCAAATTTTGGATTTCTAGGCCACCAACCTTCAAATGGGCATAACTCGCCTCAAAATAGGTATTCTTGAGATTTGAAAAGTGCATGCAAGATAGGAAAAATTGACGAACAAATTGATATGCAAAACAAAACAGCAGAAACTCCAAAAATTGCATTAAAATGCGAAAATGAAATTATAACGGCTCTAAATTGGTGTTTGCGGACCACACACCAGATTTTACGACACTTTACTAAAATTGCCTGAAAACCACTAGTCAGGGGTGAAAAACATCGCTAAATTCGAAAATCGCGTTTTTAATTGGTGTTTGCGTACCCAAACATCGGATTTTACGACAATTTCTCAAAATTGCGTGCTGCCCACCAAAGTTGACGAAAAATGGCTCAAAATAGCTGAAAATTAGGTTTTTTATTGGTGAAAAAATGTGTAAAACTAGTTTTTGATGTCAAATTCTCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGATTTGCAATTTCTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCGTCAATTTTTCCTATCTTG</pcr_primer_p2>
		<pcr_amplicon_size>469</pcr_amplicon_size>
		<canonical_amplicon>AAAGATTTGCAATTTCTCAAAAAAAAATTTGCAAAAATCTCATTTTTAAGCCAAGTTACACTAATTTTAAGATTGGTGGCCTAGAAAACCAAGTTTTTGGAAAACTAGGCCATGTTGGGTATCGTTCTGTTTGGCATGCTTTGTTGGACAGAACGCAGTTTATAGATATTTGAAATATTAATTTTGAAGCGAGTTATGGCGGTTTAAAGTTGATGGCCTAGAAAACCAAACCTAGGCCATCGTGGTTAAATATTAAATTGGCTATAACTCGGCTCAAAATTCATATTTTTGAATTCTGAAAAGTGCATTACTGTCAATATGACTTCGACAATTTTTTCGGTATAATGATGGCCTAGATTTCTCAAATTTTGGATTTCTAGGCCACCAACCTTCAAATGGGCATAACTCGCCTCAAAATAGGTATTCTTGAGATTTGAAAAGTGCATGCAAGATAGGAAAAATTGACGAA</canonical_amplicon>
		<polymorphic_amplicon>AAAGATTTGCAATTTCTCAAAAAAAAATTTGCAAAAATCTCATTTTTAAGCCAAGTTACACTAATTTTAAGATTGGTGGCCTAGAAAACCAAGTTTTTGGAAAACTAGGCCATGTTGGGTATCGTTCTGTTTGGCATGCTTTGTTGGACAGAACGCAGTTTATAGATATTTGAAATATTAATTTTGAAGCGAGTTATGGCGGTTTAAAGTTGATGGCCTAGAAAACCAAACCTAGGCCATCGTGGTTAAATATTAAATTGGCTATAACTCGGCTCAAAATTCATATTTTTGAATTCTGAAAAGTGCATTACTGTCARTATGACTTCGACAATTTTTTCGGTATAATGATGGCCTAGATTTCTCAAATTTTGGATTTCTAGGCCACCAACCTTCAAATGGGCATAACTCGCCTCAAAATAGGTATTCTTGAGATTTGAAAAGTGCATGCAAGATAGGAAAAATTGACGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33688</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>438258</contig_pos>
        <strand>+</strand>
        <context>CCCTGAACAC[C/T]attatgctag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTTCGATGCAATTTTTGAATTTTTCGTACTTTTTCACCCCTGAACAC</left_flank>
        <right_flank>ATTATGCTAGTCTGGGGAAAAAAAAGGTTGAGACGCAGAGAAAAAGTGTG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTCAATTCATTCATCAAAAAGAAGCGAGATTTTTGAAAAAGGGTTCATTCGAGAGTGACAAGAGGGATTGAAATTTGACTCGAAACATTTTTTTTTTTTGAAATTTTTTTGGAATTTTTTTTCAATTTATTTTTTGAAGTTTCGAATGTTAAGACGTTTAAAAATGAAGAAACTAACATCAAATCTGAGTCTAGCGTTGTTTTCTACCCTTAGAGCCCAGTTTTCAGGCAAGTGTCGTCAATTCTGGCGTATTGTACGCAATTTTGGAAAATTGTCGTAAAATCTGATGTTTGGTTACGCAAACACTAATTAAAAATGTGATTTTCGGACTCAGCGATGTTTTTTACCCCTAGACCCCAATTTTCATAAATTTTCAGCAAAGTGTCGTAAAATCAGACGTTTAGTACGCAAACGCCGAATTTTGAGGTTTTGGAACTCAATTTTTCAAAATTTCGATGCAATTTTTGAATTTTTCGTACTTTTTCACCCCTGAACACCATTATGCTAGTCTGGGGAAAAAAAAGGTTGAGACGCAGAGAAAAAGTGTGTGCGTCTCCACTTAATATGTGCTATTTAGGCTCTCCGCTTCGATATCGCTACCGTATTCAGACTGCAAAAAAAATACTCTCTAACCTTTTTTTTTCTCAGACAAGCAAAATATTTTTTTCAAGCAATTTCGATTACGGTACGCAGTTTTCAACCTTTTTTTTGAATTGCGTACCAAGCACCACATTTTACGACACTTTGTTGAAAAATGCTGGAAAATGATGTCTAGGGGTAAAAAGTGATGCTAAACTTGAAAATAGTAATGAAAATTGCTGATTTTGAGTGCAAAATTCCCAAATACACCAAATTGTACGACAAATCACACAAAGAGAGCAAAAAATGTTTCGAAATCTGTTGTTGTTTTTTTTTCAATTTGTTTGAAATTTAGAATTGTATAGTTCTTCAAAGACTCCTCTATAGACCAAACGGACCAAAAAAAAACTCAACGGAAC</canonical>
            <polymorphic>GTCTCAATTCATTCATCAAAAAGAAGCGAGATTTTTGAAAAAGGGTTCATTCGAGAGTGACAAGAGGGATTGAAATTTGACTCGAAACATTTTTTTTTTTTGAAATTTTTTTGGAATTTTTTTTCAATTTATTTTTTGAAGTTTCGAATGTTAAGACGTTTAAAAATGAAGAAACTAACATCAAATCTGAGTCTAGCGTTGTTTTCTACCCTTAGAGCCCAGTTTTCAGGCAAGTGTCGTCAATTCTGGCGTATTGTACGCAATTTTGGAAAATTGTCGTAAAATCTGATGTTTGGTTACGCAAACACTAATTAAAAATGTGATTTTCGGACTCAGCGATGTTTTTTACCCCTAGACCCCAATTTTCATAAATTTTCAGCAAAGTGTCGTAAAATCAGACGTTTAGTACGCAAACGCCGAATTTTGAGGTTTTGGAACTCAATTTTTCAAAATTTCGATGCAATTTTTGAATTTTTCGTACTTTTTCACCCCTGAACACYATTATGCTAGTCTGGGGAAAAAAAAGGTTGAGACGCAGAGAAAAAGTGTGTGCGTCTCCACTTAATATGTGCTATTTAGGCTCTCCGCTTCGATATCGCTACCGTATTCAGACTGCAAAAAAAATACTCTCTAACCTTTTTTTTTCTCAGACAAGCAAAATATTTTTTTCAAGCAATTTCGATTACGGTACGCAGTTTTCAACCTTTTTTTTGAATTGCGTACCAAGCACCACATTTTACGACACTTTGTTGAAAAATGCTGGAAAATGATGTCTAGGGGTAAAAAGTGATGCTAAACTTGAAAATAGTAATGAAAATTGCTGATTTTGAGTGCAAAATTCCCAAATACACCAAATTGTACGACAAATCACACAAAGAGAGCAAAAAATGTTTCGAAATCTGTTGTTGTTTTTTTTTCAATTTGTTTGAAATTTAGAATTGTATAGTTCTTCAAAGACTCCTCTATAGACCAAACGGACCAAAAAAAAACTCAACGGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGGAACTCAATTTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>GAAAACTGCGTACCGTAATC</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>TTTTGGAACTCAATTTTTCAAAATTTCGATGCAATTTTTGAATTTTTCGTACTTTTTCACCCCTGAACACCATTATGCTAGTCTGGGGAAAAAAAAGGTTGAGACGCAGAGAAAAAGTGTGTGCGTCTCCACTTAATATGTGCTATTTAGGCTCTCCGCTTCGATATCGCTACCGTATTCAGACTGCAAAAAAAATACTCTCTAACCTTTTTTTTTCTCAGACAAGCAAAATATTTTTTTCAAGCAATTTCGATTACGGTACGCAGTTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGGAACTCAATTTTTCAAAATTTCGATGCAATTTTTGAATTTTTCGTACTTTTTCACCCCTGAACACYATTATGCTAGTCTGGGGAAAAAAAAGGTTGAGACGCAGAGAAAAAGTGTGTGCGTCTCCACTTAATATGTGCTATTTAGGCTCTCCGCTTCGATATCGCTACCGTATTCAGACTGCAAAAAAAATACTCTCTAACCTTTTTTTTTCTCAGACAAGCAAAATATTTTTTTCAAGCAATTTCGATTACGGTACGCAGTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33689</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>438308</contig_pos>
        <strand></strand>
        <context>gaaaaagtgt[G/C]tgcgtctcca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CATTATGCTAGTCTGGGGAAAAAAAAGGTTGAGACGCAGAGAAAAAGTGT</left_flank>
        <right_flank>TGCGTCTCCACTTAATATGTGCTATTTAGGCTCTCCGCTTCGATATCGCT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAGAGTGACAAGAGGGATTGAAATTTGACTCGAAACATTTTTTTTTTTTGAAATTTTTTTGGAATTTTTTTTCAATTTATTTTTTGAAGTTTCGAATGTTAAGACGTTTAAAAATGAAGAAACTAACATCAAATCTGAGTCTAGCGTTGTTTTCTACCCTTAGAGCCCAGTTTTCAGGCAAGTGTCGTCAATTCTGGCGTATTGTACGCAATTTTGGAAAATTGTCGTAAAATCTGATGTTTGGTTACGCAAACACTAATTAAAAATGTGATTTTCGGACTCAGCGATGTTTTTTACCCCTAGACCCCAATTTTCATAAATTTTCAGCAAAGTGTCGTAAAATCAGACGTTTAGTACGCAAACGCCGAATTTTGAGGTTTTGGAACTCAATTTTTCAAAATTTCGATGCAATTTTTGAATTTTTCGTACTTTTTCACCCCTGAACACCATTATGCTAGTCTGGGGAAAAAAAAGGTTGAGACGCAGAGAAAAAGTGTGTGCGTCTCCACTTAATATGTGCTATTTAGGCTCTCCGCTTCGATATCGCTACCGTATTCAGACTGCAAAAAAAATACTCTCTAACCTTTTTTTTTCTCAGACAAGCAAAATATTTTTTTCAAGCAATTTCGATTACGGTACGCAGTTTTCAACCTTTTTTTTGAATTGCGTACCAAGCACCACATTTTACGACACTTTGTTGAAAAATGCTGGAAAATGATGTCTAGGGGTAAAAAGTGATGCTAAACTTGAAAATAGTAATGAAAATTGCTGATTTTGAGTGCAAAATTCCCAAATACACCAAATTGTACGACAAATCACACAAAGAGAGCAAAAAATGTTTCGAAATCTGTTGTTGTTTTTTTTTCAATTTGTTTGAAATTTAGAATTGTATAGTTCTTCAAAGACTCCTCTATAGACCAAACGGACCAAAAAAAAACTCAACGGAACAAAAAAAATTTTTGGCTCCGAAGTGCTCCAAAACCAGAAAAAAGAGAAAG</canonical>
            <polymorphic>TCGAGAGTGACAAGAGGGATTGAAATTTGACTCGAAACATTTTTTTTTTTTGAAATTTTTTTGGAATTTTTTTTCAATTTATTTTTTGAAGTTTCGAATGTTAAGACGTTTAAAAATGAAGAAACTAACATCAAATCTGAGTCTAGCGTTGTTTTCTACCCTTAGAGCCCAGTTTTCAGGCAAGTGTCGTCAATTCTGGCGTATTGTACGCAATTTTGGAAAATTGTCGTAAAATCTGATGTTTGGTTACGCAAACACTAATTAAAAATGTGATTTTCGGACTCAGCGATGTTTTTTACCCCTAGACCCCAATTTTCATAAATTTTCAGCAAAGTGTCGTAAAATCAGACGTTTAGTACGCAAACGCCGAATTTTGAGGTTTTGGAACTCAATTTTTCAAAATTTCGATGCAATTTTTGAATTTTTCGTACTTTTTCACCCCTGAACACCATTATGCTAGTCTGGGGAAAAAAAAGGTTGAGACGCAGAGAAAAAGTGTSTGCGTCTCCACTTAATATGTGCTATTTAGGCTCTCCGCTTCGATATCGCTACCGTATTCAGACTGCAAAAAAAATACTCTCTAACCTTTTTTTTTCTCAGACAAGCAAAATATTTTTTTCAAGCAATTTCGATTACGGTACGCAGTTTTCAACCTTTTTTTTGAATTGCGTACCAAGCACCACATTTTACGACACTTTGTTGAAAAATGCTGGAAAATGATGTCTAGGGGTAAAAAGTGATGCTAAACTTGAAAATAGTAATGAAAATTGCTGATTTTGAGTGCAAAATTCCCAAATACACCAAATTGTACGACAAATCACACAAAGAGAGCAAAAAATGTTTCGAAATCTGTTGTTGTTTTTTTTTCAATTTGTTTGAAATTTAGAATTGTATAGTTCTTCAAAGACTCCTCTATAGACCAAACGGACCAAAAAAAAACTCAACGGAACAAAAAAAATTTTTGGCTCCGAAGTGCTCCAAAACCAGAAAAAAGAGAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>177 158 153 102 71 64 50 45 44 25 20 17 15 12 11 10 9 8 3 2 2 2</canonical_bands>
                <polymorphic_bands>177 158 153 102 71 64 50 45 44 25 20 17 15 12 12 11 10 9 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATTTTTGAATTTTTCGTACTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAACTGCGTACCGTAATC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CAATTTTTGAATTTTTCGTACTTTTTCACCCCTGAACACCATTATGCTAGTCTGGGGAAAAAAAAGGTTGAGACGCAGAGAAAAAGTGTGTGCGTCTCCACTTAATATGTGCTATTTAGGCTCTCCGCTTCGATATCGCTACCGTATTCAGACTGCAAAAAAAATACTCTCTAACCTTTTTTTTTCTCAGACAAGCAAAATATTTTTTTCAAGCAATTTCGATTACGGTACGCAGTTTTC</canonical_amplicon>
		<polymorphic_amplicon>CAATTTTTGAATTTTTCGTACTTTTTCACCCCTGAACACCATTATGCTAGTCTGGGGAAAAAAAAGGTTGAGACGCAGAGAAAAAGTGTSTGCGTCTCCACTTAATATGTGCTATTTAGGCTCTCCGCTTCGATATCGCTACCGTATTCAGACTGCAAAAAAAATACTCTCTAACCTTTTTTTTTCTCAGACAAGCAAAATATTTTTTTCAAGCAATTTCGATTACGGTACGCAGTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33690</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>438416</contig_pos>
        <strand></strand>
        <context>cagacaagca[A/T]aatatTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAGACTGCAAAAAAAATACTCTCTAACCTTTTTTTTTCTCAGACAAGCA</left_flank>
        <right_flank>AATATTTTTTTCAAGCAATTTCGATTACGGTACGCAGTTTTCAACCTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAAAAATGAAGAAACTAACATCAAATCTGAGTCTAGCGTTGTTTTCTACCCTTAGAGCCCAGTTTTCAGGCAAGTGTCGTCAATTCTGGCGTATTGTACGCAATTTTGGAAAATTGTCGTAAAATCTGATGTTTGGTTACGCAAACACTAATTAAAAATGTGATTTTCGGACTCAGCGATGTTTTTTACCCCTAGACCCCAATTTTCATAAATTTTCAGCAAAGTGTCGTAAAATCAGACGTTTAGTACGCAAACGCCGAATTTTGAGGTTTTGGAACTCAATTTTTCAAAATTTCGATGCAATTTTTGAATTTTTCGTACTTTTTCACCCCTGAACACCATTATGCTAGTCTGGGGAAAAAAAAGGTTGAGACGCAGAGAAAAAGTGTGTGCGTCTCCACTTAATATGTGCTATTTAGGCTCTCCGCTTCGATATCGCTACCGTATTCAGACTGCAAAAAAAATACTCTCTAACCTTTTTTTTTCTCAGACAAGCAAAATATTTTTTTCAAGCAATTTCGATTACGGTACGCAGTTTTCAACCTTTTTTTTGAATTGCGTACCAAGCACCACATTTTACGACACTTTGTTGAAAAATGCTGGAAAATGATGTCTAGGGGTAAAAAGTGATGCTAAACTTGAAAATAGTAATGAAAATTGCTGATTTTGAGTGCAAAATTCCCAAATACACCAAATTGTACGACAAATCACACAAAGAGAGCAAAAAATGTTTCGAAATCTGTTGTTGTTTTTTTTTCAATTTGTTTGAAATTTAGAATTGTATAGTTCTTCAAAGACTCCTCTATAGACCAAACGGACCAAAAAAAAACTCAACGGAACAAAAAAAATTTTTGGCTCCGAAGTGCTCCAAAACCAGAAAAAAGAGAAAGAGAGTGCTCGTCCCAAAAGAATTCATTAATTTAATTAAGCGTCTCCCACCCCCTCTTCCCCGGGATTCTTAGAATTTCTAGGACAAACAAATGGACCCCCCAAAGACA</canonical>
            <polymorphic>TTTAAAAATGAAGAAACTAACATCAAATCTGAGTCTAGCGTTGTTTTCTACCCTTAGAGCCCAGTTTTCAGGCAAGTGTCGTCAATTCTGGCGTATTGTACGCAATTTTGGAAAATTGTCGTAAAATCTGATGTTTGGTTACGCAAACACTAATTAAAAATGTGATTTTCGGACTCAGCGATGTTTTTTACCCCTAGACCCCAATTTTCATAAATTTTCAGCAAAGTGTCGTAAAATCAGACGTTTAGTACGCAAACGCCGAATTTTGAGGTTTTGGAACTCAATTTTTCAAAATTTCGATGCAATTTTTGAATTTTTCGTACTTTTTCACCCCTGAACACCATTATGCTAGTCTGGGGAAAAAAAAGGTTGAGACGCAGAGAAAAAGTGTGTGCGTCTCCACTTAATATGTGCTATTTAGGCTCTCCGCTTCGATATCGCTACCGTATTCAGACTGCAAAAAAAATACTCTCTAACCTTTTTTTTTCTCAGACAAGCAWAATATTTTTTTCAAGCAATTTCGATTACGGTACGCAGTTTTCAACCTTTTTTTTGAATTGCGTACCAAGCACCACATTTTACGACACTTTGTTGAAAAATGCTGGAAAATGATGTCTAGGGGTAAAAAGTGATGCTAAACTTGAAAATAGTAATGAAAATTGCTGATTTTGAGTGCAAAATTCCCAAATACACCAAATTGTACGACAAATCACACAAAGAGAGCAAAAAATGTTTCGAAATCTGTTGTTGTTTTTTTTTCAATTTGTTTGAAATTTAGAATTGTATAGTTCTTCAAAGACTCCTCTATAGACCAAACGGACCAAAAAAAAACTCAACGGAACAAAAAAAATTTTTGGCTCCGAAGTGCTCCAAAACCAGAAAAAAGAGAAAGAGAGTGCTCGTCCCAAAAGAATTCATTAATTTAATTAAGCGTCTCCCACCCCCTCTTCCCCGGGATTCTTAGAATTTCTAGGACAAACAAATGGACCCCCCAAAGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAATTTTTCGTACTTTTTCAC</pcr_primer_p1>
		<pcr_primer_p2>TATTTGGGAATTTTGCACTC</pcr_primer_p2>
		<pcr_amplicon_size>382</pcr_amplicon_size>
		<canonical_amplicon>TTGAATTTTTCGTACTTTTTCACCCCTGAACACCATTATGCTAGTCTGGGGAAAAAAAAGGTTGAGACGCAGAGAAAAAGTGTGTGCGTCTCCACTTAATATGTGCTATTTAGGCTCTCCGCTTCGATATCGCTACCGTATTCAGACTGCAAAAAAAATACTCTCTAACCTTTTTTTTTCTCAGACAAGCAAAATATTTTTTTCAAGCAATTTCGATTACGGTACGCAGTTTTCAACCTTTTTTTTGAATTGCGTACCAAGCACCACATTTTACGACACTTTGTTGAAAAATGCTGGAAAATGATGTCTAGGGGTAAAAAGTGATGCTAAACTTGAAAATAGTAATGAAAATTGCTGATTTTGAGTGCAAAATTCCCAAATA</canonical_amplicon>
		<polymorphic_amplicon>TTGAATTTTTCGTACTTTTTCACCCCTGAACACCATTATGCTAGTCTGGGGAAAAAAAAGGTTGAGACGCAGAGAAAAAGTGTGTGCGTCTCCACTTAATATGTGCTATTTAGGCTCTCCGCTTCGATATCGCTACCGTATTCAGACTGCAAAAAAAATACTCTCTAACCTTTTTTTTTCTCAGACAAGCAWAATATTTTTTTCAAGCAATTTCGATTACGGTACGCAGTTTTCAACCTTTTTTTTGAATTGCGTACCAAGCACCACATTTTACGACACTTTGTTGAAAAATGCTGGAAAATGATGTCTAGGGGTAAAAAGTGATGCTAAACTTGAAAATAGTAATGAAAATTGCTGATTTTGAGTGCAAAATTCCCAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33691</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>444885</contig_pos>
        <strand></strand>
        <context>agcagcttaa[A/G]agcatcaaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTAATTGGAACGAACATAACACTTACACTGTCATACTAAGCAGCTTAA</left_flank>
        <right_flank>AGCATCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCAAAAAGCGGGTTTAAAATGTTCTTAAGAGGCAAAAATGGAATGGAGAGGGGAAAGGATTAGTGGGTGAGGAAACCACACTCAAAGTGATTGTTTTTGAAACGAGAGACGACATAAAATGTTGATTTCTAAAATTTTAGGAATCAGGGGTCATTTTATTGCAAAAATCTGAAAAATTGGTTGAAAATTAGGAAAGTTAGAGGATTTTGAAAATTTACTTTTTTTTGCAGGACAAACAATTTTTAAGACAAGATTTCGAAGTTGGTTTCAGAAGGTTTTAAGTGGACTTTGCATAAAATGATACAATTCAAATAATTTTACAGAGTAATTGCTTTATTTTGAAACAAAAATCATGAAAATCGGATGAAAATTCGGATAGTTATATACTTTTCAATTTTATTTGATTTTTTGAGTTCAAGAAACGATTCTAGGCCCCCTATATCGCTTGTTTTAATTGGAACGAACATAACACTTACACTGTCATACTAAGCAGCTTAAAAGCATCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTCGAATTTTTGAACCACCCGGTTCAGAGCTTCAAAATGAGCCTAAACACGACATATTTTGGACAATTTTCATTTTTGACCCTATGTCACCATGCGCCTTTAAAATCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCTCGTTCAGAGCTTCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCCCGTTCAGAGCTTCGAAATGAGC</canonical>
            <polymorphic>GGCAAAAAGCGGGTTTAAAATGTTCTTAAGAGGCAAAAATGGAATGGAGAGGGGAAAGGATTAGTGGGTGAGGAAACCACACTCAAAGTGATTGTTTTTGAAACGAGAGACGACATAAAATGTTGATTTCTAAAATTTTAGGAATCAGGGGTCATTTTATTGCAAAAATCTGAAAAATTGGTTGAAAATTAGGAAAGTTAGAGGATTTTGAAAATTTACTTTTTTTTGCAGGACAAACAATTTTTAAGACAAGATTTCGAAGTTGGTTTCAGAAGGTTTTAAGTGGACTTTGCATAAAATGATACAATTCAAATAATTTTACAGAGTAATTGCTTTATTTTGAAACAAAAATCATGAAAATCGGATGAAAATTCGGATAGTTATATACTTTTCAATTTTATTTGATTTTTTGAGTTCAAGAAACGATTCTAGGCCCCCTATATCGCTTGTTTTAATTGGAACGAACATAACACTTACACTGTCATACTAAGCAGCTTAARAGCATCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTCGAATTTTTGAACCACCCGGTTCAGAGCTTCAAAATGAGCCTAAACACGACATATTTTGGACAATTTTCATTTTTGACCCTATGTCACCATGCGCCTTTAAAATCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCTCGTTCAGAGCTTCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCCCGTTCAGAGCTTCGAAATGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGAAAATCGGATGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCATATGCCTAGATACCTTTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>900</pcr_amplicon_size>
		<canonical_amplicon>CATGAAAATCGGATGAAAATTCGGATAGTTATATACTTTTCAATTTTATTTGATTTTTTGAGTTCAAGAAACGATTCTAGGCCCCCTATATCGCTTGTTTTAATTGGAACGAACATAACACTTACACTGTCATACTAAGCAGCTTAAAAGCATCAAAATGAGCCCAAATAC</canonical_amplicon>
		<polymorphic_amplicon>CATGAAAATCGGATGAAAATTCGGATAGTTATATACTTTTCAATTTTATTTGATTTTTTGAGTTCAAGAAACGATTCTAGGCCCCCTATATCGCTTGTTTTAATTGGAACGAACATAACACTTACACTGTCATACTAAGCAGCTTAARAGCATCAAAATGAGCCCAAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33692</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>444911</contig_pos>
        <strand></strand>
        <context>ccaaatacga[G/C]atattttgga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>ACACTGTCATACTAAGCAGCTTAAAAGCATCAAAATGAGCCCAAATACGA</left_flank>
        <right_flank>ATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGAGGCAAAAATGGAATGGAGAGGGGAAAGGATTAGTGGGTGAGGAAACCACACTCAAAGTGATTGTTTTTGAAACGAGAGACGACATAAAATGTTGATTTCTAAAATTTTAGGAATCAGGGGTCATTTTATTGCAAAAATCTGAAAAATTGGTTGAAAATTAGGAAAGTTAGAGGATTTTGAAAATTTACTTTTTTTTGCAGGACAAACAATTTTTAAGACAAGATTTCGAAGTTGGTTTCAGAAGGTTTTAAGTGGACTTTGCATAAAATGATACAATTCAAATAATTTTACAGAGTAATTGCTTTATTTTGAAACAAAAATCATGAAAATCGGATGAAAATTCGGATAGTTATATACTTTTCAATTTTATTTGATTTTTTGAGTTCAAGAAACGATTCTAGGCCCCCTATATCGCTTGTTTTAATTGGAACGAACATAACACTTACACTGTCATACTAAGCAGCTTAAAAGCATCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTCGAATTTTTGAACCACCCGGTTCAGAGCTTCAAAATGAGCCTAAACACGACATATTTTGGACAATTTTCATTTTTGACCCTATGTCACCATGCGCCTTTAAAATCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCTCGTTCAGAGCTTCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCCCGTTCAGAGCTTCGAAATGAGCCTAAACACGACATTTTTTGGGTAACT</canonical>
            <polymorphic>TAAGAGGCAAAAATGGAATGGAGAGGGGAAAGGATTAGTGGGTGAGGAAACCACACTCAAAGTGATTGTTTTTGAAACGAGAGACGACATAAAATGTTGATTTCTAAAATTTTAGGAATCAGGGGTCATTTTATTGCAAAAATCTGAAAAATTGGTTGAAAATTAGGAAAGTTAGAGGATTTTGAAAATTTACTTTTTTTTGCAGGACAAACAATTTTTAAGACAAGATTTCGAAGTTGGTTTCAGAAGGTTTTAAGTGGACTTTGCATAAAATGATACAATTCAAATAATTTTACAGAGTAATTGCTTTATTTTGAAACAAAAATCATGAAAATCGGATGAAAATTCGGATAGTTATATACTTTTCAATTTTATTTGATTTTTTGAGTTCAAGAAACGATTCTAGGCCCCCTATATCGCTTGTTTTAATTGGAACGAACATAACACTTACACTGTCATACTAAGCAGCTTAAAAGCATCAAAATGAGCCCAAATACGASATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTCGAATTTTTGAACCACCCGGTTCAGAGCTTCAAAATGAGCCTAAACACGACATATTTTGGACAATTTTCATTTTTGACCCTATGTCACCATGCGCCTTTAAAATCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCTCGTTCAGAGCTTCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCCCGTTCAGAGCTTCGAAATGAGCCTAAACACGACATTTTTTGGGTAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGAAAATCGGATGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCATATGCCTAGATACCTTTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>900</pcr_amplicon_size>
		<canonical_amplicon>CATGAAAATCGGATGAAAATTCGGATAGTTATATACTTTTCAATTTTATTTGATTTTTTGAGTTCAAGAAACGATTCTAGGCCCCCTATATCGCTTGTTTTAATTGGAACGAACATAACACTTACACTGTCATACTAAGCAGCTTAAAAGCATCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTT</canonical_amplicon>
		<polymorphic_amplicon>CATGAAAATCGGATGAAAATTCGGATAGTTATATACTTTTCAATTTTATTTGATTTTTTGAGTTCAAGAAACGATTCTAGGCCCCCTATATCGCTTGTTTTAATTGGAACGAACATAACACTTACACTGTCATACTAAGCAGCTTAAAAGCATCAAAATGAGCCCAAATACGASATATTTTGGACAATTTTCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33693</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>445022</contig_pos>
        <strand></strand>
        <context>ggaaaatttt[C/T]gaatttttga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTT</left_flank>
        <right_flank>GAATTTTTGAACCACCCGGTTCAGAGCTTCAAAATGAGCCTAAACACGAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAGGAATCAGGGGTCATTTTATTGCAAAAATCTGAAAAATTGGTTGAAAATTAGGAAAGTTAGAGGATTTTGAAAATTTACTTTTTTTTGCAGGACAAACAATTTTTAAGACAAGATTTCGAAGTTGGTTTCAGAAGGTTTTAAGTGGACTTTGCATAAAATGATACAATTCAAATAATTTTACAGAGTAATTGCTTTATTTTGAAACAAAAATCATGAAAATCGGATGAAAATTCGGATAGTTATATACTTTTCAATTTTATTTGATTTTTTGAGTTCAAGAAACGATTCTAGGCCCCCTATATCGCTTGTTTTAATTGGAACGAACATAACACTTACACTGTCATACTAAGCAGCTTAAAAGCATCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTCGAATTTTTGAACCACCCGGTTCAGAGCTTCAAAATGAGCCTAAACACGACATATTTTGGACAATTTTCATTTTTGACCCTATGTCACCATGCGCCTTTAAAATCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCTCGTTCAGAGCTTCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCCCGTTCAGAGCTTCGAAATGAGCCTAAACACGACATTTTTTGGGTAACTTTCAGTTTTGACCCCTTATGCGCCTTTAAACCTAATTTTAAAACTACCGTAACTTGGCTCATTTCTACCAGATCCTGAAAAAATTTATAGTTTCGTGTTCAGCATGTTTAG</canonical>
            <polymorphic>TTAGGAATCAGGGGTCATTTTATTGCAAAAATCTGAAAAATTGGTTGAAAATTAGGAAAGTTAGAGGATTTTGAAAATTTACTTTTTTTTGCAGGACAAACAATTTTTAAGACAAGATTTCGAAGTTGGTTTCAGAAGGTTTTAAGTGGACTTTGCATAAAATGATACAATTCAAATAATTTTACAGAGTAATTGCTTTATTTTGAAACAAAAATCATGAAAATCGGATGAAAATTCGGATAGTTATATACTTTTCAATTTTATTTGATTTTTTGAGTTCAAGAAACGATTCTAGGCCCCCTATATCGCTTGTTTTAATTGGAACGAACATAACACTTACACTGTCATACTAAGCAGCTTAAAAGCATCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTYGAATTTTTGAACCACCCGGTTCAGAGCTTCAAAATGAGCCTAAACACGACATATTTTGGACAATTTTCATTTTTGACCCTATGTCACCATGCGCCTTTAAAATCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCTCGTTCAGAGCTTCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCCCGTTCAGAGCTTCGAAATGAGCCTAAACACGACATTTTTTGGGTAACTTTCAGTTTTGACCCCTTATGCGCCTTTAAACCTAATTTTAAAACTACCGTAACTTGGCTCATTTCTACCAGATCCTGAAAAAATTTATAGTTTCGTGTTCAGCATGTTTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>505 287 208</canonical_bands>
                <polymorphic_bands>713 287</polymorphic_bands>
            </assay>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>353 147 135 128 120 34 34 26 23</canonical_bands>
                <polymorphic_bands>353 161 147 128 120 34 34 23</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>353 146 135 128 121 34 34 26 23</canonical_bands>
                <polymorphic_bands>353 161 146 128 121 34 34 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGAAAATCGGATGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCATATGCCTAGATACCTTTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>900</pcr_amplicon_size>
		<canonical_amplicon>CATGAAAATCGGATGAAAATTCGGATAGTTATATACTTTTCAATTTTATTTGATTTTTTGAGTTCAAGAAACGATTCTAGGCCCCCTATATCGCTTGTTTTAATTGGAACGAACATAACACTTACACTGTCATACTAAGCAGCTTAAAAGCATCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTCGAATTTTTGAACCACCCGGTTCA</canonical_amplicon>
		<polymorphic_amplicon>CATGAAAATCGGATGAAAATTCGGATAGTTATATACTTTTCAATTTTATTTGATTTTTTGAGTTCAAGAAACGATTCTAGGCCCCCTATATCGCTTGTTTTAATTGGAACGAACATAACACTTACACTGTCATACTAAGCAGCTTAAAAGCATCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTYGAATTTTTGAACCACCCGGTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33694</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>445106</contig_pos>
        <strand></strand>
        <context>tgaccctatg[T/G]caccatgcgc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATGAGCCTAAACACGACATATTTTGGACAATTTTCATTTTTGACCCTATG</left_flank>
        <right_flank>CACCATGCGCCTTTAAAATCCTTATTTTCATATCTTACTTTAACTTTCTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTGCAGGACAAACAATTTTTAAGACAAGATTTCGAAGTTGGTTTCAGAAGGTTTTAAGTGGACTTTGCATAAAATGATACAATTCAAATAATTTTACAGAGTAATTGCTTTATTTTGAAACAAAAATCATGAAAATCGGATGAAAATTCGGATAGTTATATACTTTTCAATTTTATTTGATTTTTTGAGTTCAAGAAACGATTCTAGGCCCCCTATATCGCTTGTTTTAATTGGAACGAACATAACACTTACACTGTCATACTAAGCAGCTTAAAAGCATCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTCGAATTTTTGAACCACCCGGTTCAGAGCTTCAAAATGAGCCTAAACACGACATATTTTGGACAATTTTCATTTTTGACCCTATGTCACCATGCGCCTTTAAAATCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCTCGTTCAGAGCTTCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCCCGTTCAGAGCTTCGAAATGAGCCTAAACACGACATTTTTTGGGTAACTTTCAGTTTTGACCCCTTATGCGCCTTTAAACCTAATTTTAAAACTACCGTAACTTGGCTCATTTCTACCAGATCCTGAAAAAATTTATAGTTTCGTGTTCAGCATGTTTAGCGCTTTAAAATGAATATGCTCATGCCACGAATCAATAAAATTTGAAAATTTTCGACATTCGGGGTATGCGCCTTTAAGTGCCGA</canonical>
            <polymorphic>TTTTTTGCAGGACAAACAATTTTTAAGACAAGATTTCGAAGTTGGTTTCAGAAGGTTTTAAGTGGACTTTGCATAAAATGATACAATTCAAATAATTTTACAGAGTAATTGCTTTATTTTGAAACAAAAATCATGAAAATCGGATGAAAATTCGGATAGTTATATACTTTTCAATTTTATTTGATTTTTTGAGTTCAAGAAACGATTCTAGGCCCCCTATATCGCTTGTTTTAATTGGAACGAACATAACACTTACACTGTCATACTAAGCAGCTTAAAAGCATCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTCGAATTTTTGAACCACCCGGTTCAGAGCTTCAAAATGAGCCTAAACACGACATATTTTGGACAATTTTCATTTTTGACCCTATGKCACCATGCGCCTTTAAAATCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCTCGTTCAGAGCTTCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCCCGTTCAGAGCTTCGAAATGAGCCTAAACACGACATTTTTTGGGTAACTTTCAGTTTTGACCCCTTATGCGCCTTTAAACCTAATTTTAAAACTACCGTAACTTGGCTCATTTCTACCAGATCCTGAAAAAATTTATAGTTTCGTGTTCAGCATGTTTAGCGCTTTAAAATGAATATGCTCATGCCACGAATCAATAAAATTTGAAAATTTTCGACATTCGGGGTATGCGCCTTTAAGTGCCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNNNGTC</site>
                <isoschizomers>
                    <enzyme>AhdI</enzyme>
                    <enzyme>AspEI</enzyme>
                    <enzyme>Eam1105I</enzyme>
                    <enzyme>EclHKI</enzyme>
                    <enzyme>NruGI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>498 301 147 54</canonical_bands>
                <polymorphic_bands>799 147 54</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGAAAATCGGATGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCATATGCCTAGATACCTTTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>900</pcr_amplicon_size>
		<canonical_amplicon>CATGAAAATCGGATGAAAATTCGGATAGTTATATACTTTTCAATTTTATTTGATTTTTTGAGTTCAAGAAACGATTCTAGGCCCCCTATATCGCTTGTTTTAATTGGAACGAACATAACACTTACACTGTCATACTAAGCAGCTTAAAAGCATCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTCGAATTTTTGAACCACCCGGTTCAGAGCTTCAAAATGAGCCTAAACACGACATATTTTGGACAATTTTCATTTTTGACCCTATGTCACCATGCGCCTTTAAAATCCTT</canonical_amplicon>
		<polymorphic_amplicon>CATGAAAATCGGATGAAAATTCGGATAGTTATATACTTTTCAATTTTATTTGATTTTTTGAGTTCAAGAAACGATTCTAGGCCCCCTATATCGCTTGTTTTAATTGGAACGAACATAACACTTACACTGTCATACTAAGCAGCTTAAAAGCATCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTCGAATTTTTGAACCACCCGGTTCAGAGCTTCAAAATGAGCCTAAACACGACATATTTTGGACAATTTTCATTTTTGACCCTATGKCACCATGCGCCTTTAAAATCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33695</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>445183</contig_pos>
        <strand></strand>
        <context>ggaaaatttt[T/C]gaattttyga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTT</left_flank>
        <right_flank>GAATTTTCGAACTCACCTCGTTCAGAGCTTCAAAATGAGCCCAAATACGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGATACAATTCAAATAATTTTACAGAGTAATTGCTTTATTTTGAAACAAAAATCATGAAAATCGGATGAAAATTCGGATAGTTATATACTTTTCAATTTTATTTGATTTTTTGAGTTCAAGAAACGATTCTAGGCCCCCTATATCGCTTGTTTTAATTGGAACGAACATAACACTTACACTGTCATACTAAGCAGCTTAAAAGCATCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTCGAATTTTTGAACCACCCGGTTCAGAGCTTCAAAATGAGCCTAAACACGACATATTTTGGACAATTTTCATTTTTGACCCTATGTCACCATGCGCCTTTAAAATCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCTCGTTCAGAGCTTCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCCCGTTCAGAGCTTCGAAATGAGCCTAAACACGACATTTTTTGGGTAACTTTCAGTTTTGACCCCTTATGCGCCTTTAAACCTAATTTTAAAACTACCGTAACTTGGCTCATTTCTACCAGATCCTGAAAAAATTTATAGTTTCGTGTTCAGCATGTTTAGCGCTTTAAAATGAATATGCTCATGCCACGAATCAATAAAATTTGAAAATTTTCGACATTCGGGGTATGCGCCTTTAAGTGCCGAAAACCAAAACTAAAGGTATCTAGGCATATGGGGTATCATTTCAAAGCAAAAAATGTGCTAATTGAGAATATGCAAAA</canonical>
            <polymorphic>ATGATACAATTCAAATAATTTTACAGAGTAATTGCTTTATTTTGAAACAAAAATCATGAAAATCGGATGAAAATTCGGATAGTTATATACTTTTCAATTTTATTTGATTTTTTGAGTTCAAGAAACGATTCTAGGCCCCCTATATCGCTTGTTTTAATTGGAACGAACATAACACTTACACTGTCATACTAAGCAGCTTAAAAGCATCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTCGAATTTTTGAACCACCCGGTTCAGAGCTTCAAAATGAGCCTAAACACGACATATTTTGGACAATTTTCATTTTTGACCCTATGTCACCATGCGCCTTTAAAATCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTYGAATTTTCGAACTCACCTCGTTCAGAGCTTCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCCCGTTCAGAGCTTCGAAATGAGCCTAAACACGACATTTTTTGGGTAACTTTCAGTTTTGACCCCTTATGCGCCTTTAAACCTAATTTTAAAACTACCGTAACTTGGCTCATTTCTACCAGATCCTGAAAAAATTTATAGTTTCGTGTTCAGCATGTTTAGCGCTTTAAAATGAATATGCTCATGCCACGAATCAATAAAATTTGAAAATTTTCGACATTCGGGGTATGCGCCTTTAAGTGCCGAAAACCAAAACTAAAGGTATCTAGGCATATGGGGTATCATTTCAAAGCAAAAAATGTGCTAATTGAGAATATGCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGAAAATCGGATGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCATATGCCTAGATACCTTTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>900</pcr_amplicon_size>
		<canonical_amplicon>CATGAAAATCGGATGAAAATTCGGATAGTTATATACTTTTCAATTTTATTTGATTTTTTGAGTTCAAGAAACGATTCTAGGCCCCCTATATCGCTTGTTTTAATTGGAACGAACATAACACTTACACTGTCATACTAAGCAGCTTAAAAGCATCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTCGAATTTTTGAACCACCCGGTTCAGAGCTTCAAAATGAGCCTAAACACGACATATTTTGGACAATTTTCATTTTTGACCCTATGTCACCATGCGCCTTTAAAATCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCTCGTTCAGAGCTTCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCCCGTTCAGAGCTTCGAAATGAGCCTAAACACGACATTTTTTGGGTAACTTTCAGTTTTGACCCCTTATGCGCCTTTAAACCTAATTTTAAAACTACCGTAACTTGGCTCATTTCTACCAGATCCTGAAAAAATTTATAGTTTCGTGTTCAGCATGTTTAGCGCTTTAAAATGAATATGCTCATGCCACGAATCAATAAAATTTGAAAATTTTCGACATTCGGGGTATGCGCCTTTAAGTGCCGAAAACCAAAACTAAAGGTATCTAGGCATATGG</canonical_amplicon>
		<polymorphic_amplicon>CATGAAAATCGGATGAAAATTCGGATAGTTATATACTTTTCAATTTTATTTGATTTTTTGAGTTCAAGAAACGATTCTAGGCCCCCTATATCGCTTGTTTTAATTGGAACGAACATAACACTTACACTGTCATACTAAGCAGCTTAAAAGCATCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTCGAATTTTTGAACCACCCGGTTCAGAGCTTCAAAATGAGCCTAAACACGACATATTTTGGACAATTTTCATTTTTGACCCTATGTCACCATGCGCCTTTAAAATCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTYGAATTTTCGAACTCACCTCGTTCAGAGCTTCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCCCGTTCAGAGCTTCGAAATGAGCCTAAACACGACATTTTTTGGGTAACTTTCAGTTTTGACCCCTTATGCGCCTTTAAACCTAATTTTAAAACTACCGTAACTTGGCTCATTTCTACCAGATCCTGAAAAAATTTATAGTTTCGTGTTCAGCATGTTTAGCGCTTTAAAATGAATATGCTCATGCCACGAATCAATAAAATTTGAAAATTTTCGACATTCGGGGTATGCGCCTTTAAGTGCCGAAAACCAAAACTAAAGGTATCTAGGCATATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33696</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>445191</contig_pos>
        <strand></strand>
        <context>ttygaatttt[C/T]gaactcacct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTT</left_flank>
        <right_flank>GAACTCACCTCGTTCAGAGCTTCAAAATGAGCCCAAATACGAGATATTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCAAATAATTTTACAGAGTAATTGCTTTATTTTGAAACAAAAATCATGAAAATCGGATGAAAATTCGGATAGTTATATACTTTTCAATTTTATTTGATTTTTTGAGTTCAAGAAACGATTCTAGGCCCCCTATATCGCTTGTTTTAATTGGAACGAACATAACACTTACACTGTCATACTAAGCAGCTTAAAAGCATCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTCGAATTTTTGAACCACCCGGTTCAGAGCTTCAAAATGAGCCTAAACACGACATATTTTGGACAATTTTCATTTTTGACCCTATGTCACCATGCGCCTTTAAAATCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCTCGTTCAGAGCTTCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCCCGTTCAGAGCTTCGAAATGAGCCTAAACACGACATTTTTTGGGTAACTTTCAGTTTTGACCCCTTATGCGCCTTTAAACCTAATTTTAAAACTACCGTAACTTGGCTCATTTCTACCAGATCCTGAAAAAATTTATAGTTTCGTGTTCAGCATGTTTAGCGCTTTAAAATGAATATGCTCATGCCACGAATCAATAAAATTTGAAAATTTTCGACATTCGGGGTATGCGCCTTTAAGTGCCGAAAACCAAAACTAAAGGTATCTAGGCATATGGGGTATCATTTCAAAGCAAAAAATGTGCTAATTGAGAATATGCAAAAATTGAGTT</canonical>
            <polymorphic>ATTCAAATAATTTTACAGAGTAATTGCTTTATTTTGAAACAAAAATCATGAAAATCGGATGAAAATTCGGATAGTTATATACTTTTCAATTTTATTTGATTTTTTGAGTTCAAGAAACGATTCTAGGCCCCCTATATCGCTTGTTTTAATTGGAACGAACATAACACTTACACTGTCATACTAAGCAGCTTAAAAGCATCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTCGAATTTTTGAACCACCCGGTTCAGAGCTTCAAAATGAGCCTAAACACGACATATTTTGGACAATTTTCATTTTTGACCCTATGTCACCATGCGCCTTTAAAATCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTYGAACTCACCTCGTTCAGAGCTTCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCCCGTTCAGAGCTTCGAAATGAGCCTAAACACGACATTTTTTGGGTAACTTTCAGTTTTGACCCCTTATGCGCCTTTAAACCTAATTTTAAAACTACCGTAACTTGGCTCATTTCTACCAGATCCTGAAAAAATTTATAGTTTCGTGTTCAGCATGTTTAGCGCTTTAAAATGAATATGCTCATGCCACGAATCAATAAAATTTGAAAATTTTCGACATTCGGGGTATGCGCCTTTAAGTGCCGAAAACCAAAACTAAAGGTATCTAGGCATATGGGGTATCATTTCAAAGCAAAAAATGTGCTAATTGAGAATATGCAAAAATTGAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>316 304 135 128 34 34 26 23</canonical_bands>
                <polymorphic_bands>316 304 162 135 34 26 23</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>305 199 135 128 116 34 34 26 23</canonical_bands>
                <polymorphic_bands>305 199 162 135 116 34 26 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGAAAATCGGATGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCATATGCCTAGATACCTTTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>900</pcr_amplicon_size>
		<canonical_amplicon>CATGAAAATCGGATGAAAATTCGGATAGTTATATACTTTTCAATTTTATTTGATTTTTTGAGTTCAAGAAACGATTCTAGGCCCCCTATATCGCTTGTTTTAATTGGAACGAACATAACACTTACACTGTCATACTAAGCAGCTTAAAAGCATCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTCGAATTTTTGAACCACCCGGTTCAGAGCTTCAAAATGAGCCTAAACACGACATATTTTGGACAATTTTCATTTTTGACCCTATGTCACCATGCGCCTTTAAAATCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCTCGTTCAGAGCTTCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCCCGTTCAGAGCTTCGAAATGAGCCTAAACACGACATTTTTTGGGTAACTTTCAGTTTTGACCCCTTATGCGCCTTTAAACCTAATTTTAAAACTACCGTAACTTGGCTCATTTCTACCAGATCCTGAAAAAATTTATAGTTTCGTGTTCAGCATGTTTAGCGCTTTAAAATGAATATGCTCATGCCACGAATCAATAAAATTTGAAAATTTTCGACATTCGGGGTATGCGCCTTTAAGTGCCGAAAACCAAAACTAAAGGTATCTAGGCATATGG</canonical_amplicon>
		<polymorphic_amplicon>CATGAAAATCGGATGAAAATTCGGATAGTTATATACTTTTCAATTTTATTTGATTTTTTGAGTTCAAGAAACGATTCTAGGCCCCCTATATCGCTTGTTTTAATTGGAACGAACATAACACTTACACTGTCATACTAAGCAGCTTAAAAGCATCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTCGAATTTTTGAACCACCCGGTTCAGAGCTTCAAAATGAGCCTAAACACGACATATTTTGGACAATTTTCATTTTTGACCCTATGTCACCATGCGCCTTTAAAATCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTYGAACTCACCTCGTTCAGAGCTTCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCCCGTTCAGAGCTTCGAAATGAGCCTAAACACGACATTTTTTGGGTAACTTTCAGTTTTGACCCCTTATGCGCCTTTAAACCTAATTTTAAAACTACCGTAACTTGGCTCATTTCTACCAGATCCTGAAAAAATTTATAGTTTCGTGTTCAGCATGTTTAGCGCTTTAAAATGAATATGCTCATGCCACGAATCAATAAAATTTGAAAATTTTCGACATTCGGGGTATGCGCCTTTAAGTGCCGAAAACCAAAACTAAAGGTATCTAGGCATATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33697</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>445286</contig_pos>
        <strand></strand>
        <context>cgcctttaaa[C/A]tccttatttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAA</left_flank>
        <right_flank>TCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGATTTTTTGAGTTCAAGAAACGATTCTAGGCCCCCTATATCGCTTGTTTTAATTGGAACGAACATAACACTTACACTGTCATACTAAGCAGCTTAAAAGCATCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTCGAATTTTTGAACCACCCGGTTCAGAGCTTCAAAATGAGCCTAAACACGACATATTTTGGACAATTTTCATTTTTGACCCTATGTCACCATGCGCCTTTAAAATCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCTCGTTCAGAGCTTCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCCCGTTCAGAGCTTCGAAATGAGCCTAAACACGACATTTTTTGGGTAACTTTCAGTTTTGACCCCTTATGCGCCTTTAAACCTAATTTTAAAACTACCGTAACTTGGCTCATTTCTACCAGATCCTGAAAAAATTTATAGTTTCGTGTTCAGCATGTTTAGCGCTTTAAAATGAATATGCTCATGCCACGAATCAATAAAATTTGAAAATTTTCGACATTCGGGGTATGCGCCTTTAAGTGCCGAAAACCAAAACTAAAGGTATCTAGGCATATGGGGTATCATTTCAAAGCAAAAAATGTGCTAATTGAGAATATGCAAAAATTGAGTTGAAAAAGTTGAAATCCGAAAAGTTACGGTAGTTTTTGGGTGAAATTCCAAGGAACAAAATTCCAAAAAAACACCCTAGAAAGTGAGAAAAAGCAA</canonical>
            <polymorphic>TTGATTTTTTGAGTTCAAGAAACGATTCTAGGCCCCCTATATCGCTTGTTTTAATTGGAACGAACATAACACTTACACTGTCATACTAAGCAGCTTAAAAGCATCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAAMTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTCGAATTTTTGAACCACCCGGTTCAGAGCTTCAAAATGAGCCTAAACACGACATATTTTGGACAATTTTCATTTTTGACCCTATGTCACCATGCGCCTTTAAAATCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCTCGTTCAGAGCTTCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCCCGTTCAGAGCTTCGAAATGAGCCTAAACACGACATTTTTTGGGTAACTTTCAGTTTTGACCCCTTATGCGCCTTTAAACCTAATTTTAAAACTACCGTAACTTGGCTCATTTCTACCAGATCCTGAAAAAATTTATAGTTTCGTGTTCAGCATGTTTAGCGCTTTAAAATGAATATGCTCATGCCACGAATCAATAAAATTTGAAAATTTTCGACATTCGGGGTATGCGCCTTTAAGTGCCGAAAACCAAAACTAAAGGTATCTAGGCATATGGGGTATCATTTCAAAGCAAAAAATGTGCTAATTGAGAATATGCAAAAATTGAGTTGAAAAAGTTGAAATCCGAAAAGTTACGGTAGTTTTTGGGTGAAATTCCAAGGAACAAAATTCCAAAAAAACACCCTAGAAAGTGAGAAAAAGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGAAAATCGGATGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCATATGCCTAGATACCTTTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>900</pcr_amplicon_size>
		<canonical_amplicon>ACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCCCGTTCAGAGCTTCGAAATGAGCCTAAACACGACATTTTTTGGGTAACTTTCAGTTTTGACCCCTTATGCGCCTTTAAACCTAATTTTAAAACTACCGTAACTTGGCTCATTTCTACCAGATCCTGAAAAAATTTATAGTTTCGTGTTCAGCATGTTTAGCGCTTTAAAATGAATATGCTCATGCCACGAATCAATAAAATTTGAAAATTTTCGACATTCGGGGTATGCGCCTTTAAGTGCCGAAAACCAAAACTAAAGGTATCTAGGCATATGG</canonical_amplicon>
		<polymorphic_amplicon>ACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCCCGTTCAGAGCTTCGAAATGAGCCTAAACACGACATTTTTTGGGTAACTTTCAGTTTTGACCCCTTATGCGCCTTTAAACCTAATTTTAAAACTACCGTAACTTGGCTCATTTCTACCAGATCCTGAAAAAATTTATAGTTTCGTGTTCAGCATGTTTAGCGCTTTAAAATGAATATGCTCATGCCACGAATCAATAAAATTTGAAAATTTTCGACATTCGGGGTATGCGCCTTTAAGTGCCGAAAACCAAAACTAAAGGTATCTAGGCATATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33698</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>445345</contig_pos>
        <strand></strand>
        <context>ggaaaatttt[T/C]gaattttcga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTT</left_flank>
        <right_flank>GAATTTTCGAACTCACCCCGTTCAGAGCTTCGAAATGAGCCTAAACACGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGAACATAACACTTACACTGTCATACTAAGCAGCTTAAAAGCATCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTCGAATTTTTGAACCACCCGGTTCAGAGCTTCAAAATGAGCCTAAACACGACATATTTTGGACAATTTTCATTTTTGACCCTATGTCACCATGCGCCTTTAAAATCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCTCGTTCAGAGCTTCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCCCGTTCAGAGCTTCGAAATGAGCCTAAACACGACATTTTTTGGGTAACTTTCAGTTTTGACCCCTTATGCGCCTTTAAACCTAATTTTAAAACTACCGTAACTTGGCTCATTTCTACCAGATCCTGAAAAAATTTATAGTTTCGTGTTCAGCATGTTTAGCGCTTTAAAATGAATATGCTCATGCCACGAATCAATAAAATTTGAAAATTTTCGACATTCGGGGTATGCGCCTTTAAGTGCCGAAAACCAAAACTAAAGGTATCTAGGCATATGGGGTATCATTTCAAAGCAAAAAATGTGCTAATTGAGAATATGCAAAAATTGAGTTGAAAAAGTTGAAATCCGAAAAGTTACGGTAGTTTTTGGGTGAAATTCCAAGGAACAAAATTCCAAAAAAACACCCTAGAAAGTGAGAAAAAGCAAAGTGCAAACATACAAAAAAAAAAGAGAAATAGAGTGAGAGACGCAGAGAAAAAAAAAGA</canonical>
            <polymorphic>ACGAACATAACACTTACACTGTCATACTAAGCAGCTTAAAAGCATCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTCGAATTTTTGAACCACCCGGTTCAGAGCTTCAAAATGAGCCTAAACACGACATATTTTGGACAATTTTCATTTTTGACCCTATGTCACCATGCGCCTTTAAAATCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTYGAATTTTCGAACTCACCTCGTTCAGAGCTTCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCCCGTTCAGAGCTTCGAAATGAGCCTAAACACGACATTTTTTGGGTAACTTTCAGTTTTGACCCCTTATGCGCCTTTAAACCTAATTTTAAAACTACCGTAACTTGGCTCATTTCTACCAGATCCTGAAAAAATTTATAGTTTCGTGTTCAGCATGTTTAGCGCTTTAAAATGAATATGCTCATGCCACGAATCAATAAAATTTGAAAATTTTCGACATTCGGGGTATGCGCCTTTAAGTGCCGAAAACCAAAACTAAAGGTATCTAGGCATATGGGGTATCATTTCAAAGCAAAAAATGTGCTAATTGAGAATATGCAAAAATTGAGTTGAAAAAGTTGAAATCCGAAAAGTTACGGTAGTTTTTGGGTGAAATTCCAAGGAACAAAATTCCAAAAAAACACCCTAGAAAGTGAGAAAAAGCAAAGTGCAAACATACAAAAAAAAAAGAGAAATAGAGTGAGAGACGCAGAGAAAAAAAAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGAAAATCGGATGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCATATGCCTAGATACCTTTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>900</pcr_amplicon_size>
		<canonical_amplicon>TTGAATTTTCGAACTCACCCCGTTCAGAGCTTCGAAATGAGCCTAAACACGACATTTTTTGGGTAACTTTCAGTTTTGACCCCTTATGCGCCTTTAAACCTAATTTTAAAACTACCGTAACTTGGCTCATTTCTACCAGATCCTGAAAAAATTTATAGTTTCGTGTTCAGCATGTTTAGCGCTTTAAAATGAATATGCTCATGCCACGAATCAATAAAATTTGAAAATTTTCGACATTCGGGGTATGCGCCTTTAAGTGCCGAAAACCAAAACTAAAGGTATCTAGGCATATGG</canonical_amplicon>
		<polymorphic_amplicon>TTGAATTTTCGAACTCACCCCGTTCAGAGCTTCGAAATGAGCCTAAACACGACATTTTTTGGGTAACTTTCAGTTTTGACCCCTTATGCGCCTTTAAACCTAATTTTAAAACTACCGTAACTTGGCTCATTTCTACCAGATCCTGAAAAAATTTATAGTTTCGTGTTCAGCATGTTTAGCGCTTTAAAATGAATATGCTCATGCCACGAATCAATAAAATTTGAAAATTTTCGACATTCGGGGTATGCGCCTTTAAGTGCCGAAAACCAAAACTAAAGGTATCTAGGCATATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33699</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>445399</contig_pos>
        <strand></strand>
        <context>aacacgacat[T/A]ttttgggtaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTTCGAACTCACCCCGTTCAGAGCTTCGAAATGAGCCTAAACACGACAT</left_flank>
        <right_flank>TTTTGGGTAACTTTCAGTTTTGACCCCTTATGCGCCTTTAAACCTAATTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTCGAATTTTTGAACCACCCGGTTCAGAGCTTCAAAATGAGCCTAAACACGACATATTTTGGACAATTTTCATTTTTGACCCTATGTCACCATGCGCCTTTAAAATCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCTCGTTCAGAGCTTCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCCCGTTCAGAGCTTCGAAATGAGCCTAAACACGACATTTTTTGGGTAACTTTCAGTTTTGACCCCTTATGCGCCTTTAAACCTAATTTTAAAACTACCGTAACTTGGCTCATTTCTACCAGATCCTGAAAAAATTTATAGTTTCGTGTTCAGCATGTTTAGCGCTTTAAAATGAATATGCTCATGCCACGAATCAATAAAATTTGAAAATTTTCGACATTCGGGGTATGCGCCTTTAAGTGCCGAAAACCAAAACTAAAGGTATCTAGGCATATGGGGTATCATTTCAAAGCAAAAAATGTGCTAATTGAGAATATGCAAAAATTGAGTTGAAAAAGTTGAAATCCGAAAAGTTACGGTAGTTTTTGGGTGAAATTCCAAGGAACAAAATTCCAAAAAAACACCCTAGAAAGTGAGAAAAAGCAAAGTGCAAACATACAAAAAAAAAAGAGAAATAGAGTGAGAGACGCAGAGAAAAAAAAAGAAAATCTACTCAAATTACAAAAAAATCCATGGAGATCAAATATTTGTGTAAATGA</canonical>
            <polymorphic>CCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTCGAATTTTTGAACCACCCGGTTCAGAGCTTCAAAATGAGCCTAAACACGACATATTTTGGACAATTTTCATTTTTGACCCTATGTCACCATGCGCCTTTAAAATCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCTCGTTCAGAGCTTCAAAATGAGCCCAAATACGAGATATTTTGGACAATTTTCATTTTTGACCCTATGGCACCATGCGCCTTTAAACTCCTTATTTTCATATCTTACTTTAACTTTCTTCGAATTAGCCAGAAACGGAAAATTTTTGAATTTTCGAACTCACCCCGTTCAGAGCTTCGAAATGAGCCTAAACACGACATWTTTTGGGTAACTTTCAGTTTTGACCCCTTATGCGCCTTTAAACCTAATTTTAAAACTACCGTAACTTGGCTCATTTCTACCAGATCCTGAAAAAATTTATAGTTTCGTGTTCAGCATGTTTAGCGCTTTAAAATGAATATGCTCATGCCACGAATCAATAAAATTTGAAAATTTTCGACATTCGGGGTATGCGCCTTTAAGTGCCGAAAACCAAAACTAAAGGTATCTAGGCATATGGGGTATCATTTCAAAGCAAAAAATGTGCTAATTGAGAATATGCAAAAATTGAGTTGAAAAAGTTGAAATCCGAAAAGTTACGGTAGTTTTTGGGTGAAATTCCAAGGAACAAAATTCCAAAAAAACACCCTAGAAAGTGAGAAAAAGCAAAGTGCAAACATACAAAAAAAAAAGAGAAATAGAGTGAGAGACGCAGAGAAAAAAAAAGAAAATCTACTCAAATTACAAAAAAATCCATGGAGATCAAATATTTGTGTAAATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGAAAATCGGATGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCATATGCCTAGATACCTTTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>900</pcr_amplicon_size>
		<canonical_amplicon>TTTTTTGGGTAACTTTCAGTTTTGACCCCTTATGCGCCTTTAAACCTAATTTTAAAACTACCGTAACTTGGCTCATTTCTACCAGATCCTGAAAAAATTTATAGTTTCGTGTTCAGCATGTTTAGCGCTTTAAAATGAATATGCTCATGCCACGAATCAATAAAATTTGAAAATTTTCGACATTCGGGGTATGCGCCTTTAAGTGCCGAAAACCAAAACTAAAGGTATCTAGGCATATGG</canonical_amplicon>
		<polymorphic_amplicon>TWTTTTGGGTAACTTTCAGTTTTGACCCCTTATGCGCCTTTAAACCTAATTTTAAAACTACCGTAACTTGGCTCATTTCTACCAGATCCTGAAAAAATTTATAGTTTCGTGTTCAGCATGTTTAGCGCTTTAAAATGAATATGCTCATGCCACGAATCAATAAAATTTGAAAATTTTCGACATTCGGGGTATGCGCCTTTAAGTGCCGAAAACCAAAACTAAAGGTATCTAGGCATATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33700</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>446923</contig_pos>
        <strand></strand>
        <context>tgtggggtat[T/C]attcgaaagc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTAAGGGGGTCAAAAATCAAAATTGATGGAATTTAGACATGTGGGGTAT</left_flank>
        <right_flank>ATTCGAAAGCTAAAAATGCGCTGATAAAGAATATGCAAAAATTTGAGAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCATGTTGGTTCAAACTGAAAAATTATACCTTTTTTGAATTGAACTAGTTTAGAGCTTCAAAATGAGTCTTAACACGACCTAATTTAGAGAATTTCCATTTTTGACCCAGGAGCACCATGTGCCTTTCAACTCCTCATTTAATTTCCTACTGTAACTTTCTTCATTTTTGCTGGAATTGAAAATTTTTCATAGTTTCGAATTGAAGACATTTTGGGCTTCAAAATGAGCCTAAACATGACTTGTTTTGGAAAATTTTAAATTTTGACCAACCACCCCCCCCCCCTGCCTTTTAAACCAATTTTTGAAACTACAGTAACTTGTCTCATTTCTGCCAGAAACTAGAAGTTTTAGTAGTTTTTAGATGAGCAAAACTAGCGCTTCAAAATGAGTATAGTCGTGCCAGAAAAAGTTTCAAATTTGGAAATTTCGATTTTGGGGTATGCGCCTTTAAGGGGGTCAAAAATCAAAATTGATGGAATTTAGACATGTGGGGTATTATTCGAAAGCTAAAAATGCGCTGATAAAGAATATGCAAAAATTTGAGAAAAATATCTAGAATTGAAGAAGTTACGGTAGATTTAAAATTTTGAAATAGGAAAAAAAATTTCTTTTCAACACATTTTTTTTCAACAATTCAATTCATAATTGAAACATAGTTTTAAGATAAATTGGAACAAGAAAAATTTAAGGAATGTTCTGGAAAGGGGTAATGTGAGAAGAAATGACATCACATGGGACGGATGGGGCTGAGGTGGAAGATGAGGACACACACATAAGTCGAACTGGTAAACATCACACTTAACTGTTGAGAGAGGAAGAGAGTGAAGAGACTTAGACAGTTAGAGAAAAAAACTAGAAAAATGTTTCGAAATCAGTTTAAAGAACCTTGGAATACCCAGTGATGATGACTCAGACACCCCCCCCCCCCCATGGGAGGCGTTTTGGTCCTTTTGTGGGAGAAAAATTATTTTGAAATTTTCAGAAAGCTCAAAATGCG</canonical>
            <polymorphic>TCTCATGTTGGTTCAAACTGAAAAATTATACCTTTTTTGAATTGAACTAGTTTAGAGCTTCAAAATGAGTCTTAACACGACCTAATTTAGAGAATTTCCATTTTTGACCCAGGAGCACCATGTGCCTTTCAACTCCTCATTTAATTTCCTACTGTAACTTTCTTCATTTTTGCTGGAATTGAAAATTTTTCATAGTTTCGAATTGAAGACATTTTGGGCTTCAAAATGAGCCTAAACATGACTTGTTTTGGAAAATTTTAAATTTTGACCAACCACCCCCCCCCCCTGCCTTTTAAACCAATTTTTGAAACTACAGTAACTTGTCTCATTTCTGCCAGAAACTAGAAGTTTTAGTAGTTTTTAGATGAGCAAAACTAGCGCTTCAAAATGAGTATAGTCGTGCCAGAAAAAGTTTCAAATTTGGAAATTTCGATTTTGGGGTATGCGCCTTTAAGGGGGTCAAAAATCAAAATTGATGGAATTTAGACATGTGGGGTATYATTCGAAAGCTAAAAATGCGCTGATAAAGAATATGCAAAAATTTGAGAAAAATATCTAGAATTGAAGAAGTTACGGTAGATTTAAAATTTTGAAATAGGAAAAAAAATTTCTTTTCAACACATTTTTTTTCAACAATTCAATTCATAATTGAAACATAGTTTTAAGATAAATTGGAACAAGAAAAATTTAAGGAATGTTCTGGAAAGGGGTAATGTGAGAAGAAATGACATCACATGGGACGGATGGGGCTGAGGTGGAAGATGAGGACACACACATAAGTCGAACTGGTAAACATCACACTTAACTGTTGAGAGAGGAAGAGAGTGAAGAGACTTAGACAGTTAGAGAAAAAAACTAGAAAAATGTTTCGAAATCAGTTTAAAGAACCTTGGAATACCCAGTGATGATGACTCAGACACCCCCCCCCCCCCATGGGAGGCGTTTTGGTCCTTTTGTGGGAGAAAAATTATTTTGAAATTTTCAGAAAGCTCAAAATGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGAAAATAAAAACCACATTAG</pcr_primer_p1>
		<pcr_primer_p2>AAATTTTAAATCTACCGTAACTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>692</pcr_amplicon_size>
		<canonical_amplicon>TTATTCGAAAGCTAAAAATGCGCTGATAAAGAATATGCAAAAATTTGAGAAAAATATCTAGAATTGAAGAAGTTACGGTAGATTTAAAATTT</canonical_amplicon>
		<polymorphic_amplicon>TYATTCGAAAGCTAAAAATGCGCTGATAAAGAATATGCAAAAATTTGAGAAAAATATCTAGAATTGAAGAAGTTACGGTAGATTTAAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33701</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>446987</contig_pos>
        <strand></strand>
        <context>ATCTAGAATT[G/T]AAGAAGTTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATGCGCTGATAAAGAATATGCAAAAATTTGAGAAAAATATCTAGAATT</left_flank>
        <right_flank>AAGAAGTTACGGTAGATTTAAAATTTTGAAATAGGAAAAAAAATTTCTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAGTCTTAACACGACCTAATTTAGAGAATTTCCATTTTTGACCCAGGAGCACCATGTGCCTTTCAACTCCTCATTTAATTTCCTACTGTAACTTTCTTCATTTTTGCTGGAATTGAAAATTTTTCATAGTTTCGAATTGAAGACATTTTGGGCTTCAAAATGAGCCTAAACATGACTTGTTTTGGAAAATTTTAAATTTTGACCAACCACCCCCCCCCCCTGCCTTTTAAACCAATTTTTGAAACTACAGTAACTTGTCTCATTTCTGCCAGAAACTAGAAGTTTTAGTAGTTTTTAGATGAGCAAAACTAGCGCTTCAAAATGAGTATAGTCGTGCCAGAAAAAGTTTCAAATTTGGAAATTTCGATTTTGGGGTATGCGCCTTTAAGGGGGTCAAAAATCAAAATTGATGGAATTTAGACATGTGGGGTATTATTCGAAAGCTAAAAATGCGCTGATAAAGAATATGCAAAAATTTGAGAAAAATATCTAGAATTGAAGAAGTTACGGTAGATTTAAAATTTTGAAATAGGAAAAAAAATTTCTTTTCAACACATTTTTTTTCAACAATTCAATTCATAATTGAAACATAGTTTTAAGATAAATTGGAACAAGAAAAATTTAAGGAATGTTCTGGAAAGGGGTAATGTGAGAAGAAATGACATCACATGGGACGGATGGGGCTGAGGTGGAAGATGAGGACACACACATAAGTCGAACTGGTAAACATCACACTTAACTGTTGAGAGAGGAAGAGAGTGAAGAGACTTAGACAGTTAGAGAAAAAAACTAGAAAAATGTTTCGAAATCAGTTTAAAGAACCTTGGAATACCCAGTGATGATGACTCAGACACCCCCCCCCCCCCATGGGAGGCGTTTTGGTCCTTTTGTGGGAGAAAAATTATTTTGAAATTTTCAGAAAGCTCAAAATGCGATGAAAATCTTTTAGAAAAAATCCTTAAAATTTCAAAAAAAAAATTTTTTTTCAAAATTTCAAA</canonical>
            <polymorphic>ATGAGTCTTAACACGACCTAATTTAGAGAATTTCCATTTTTGACCCAGGAGCACCATGTGCCTTTCAACTCCTCATTTAATTTCCTACTGTAACTTTCTTCATTTTTGCTGGAATTGAAAATTTTTCATAGTTTCGAATTGAAGACATTTTGGGCTTCAAAATGAGCCTAAACATGACTTGTTTTGGAAAATTTTAAATTTTGACCAACCACCCCCCCCCCCTGCCTTTTAAACCAATTTTTGAAACTACAGTAACTTGTCTCATTTCTGCCAGAAACTAGAAGTTTTAGTAGTTTTTAGATGAGCAAAACTAGCGCTTCAAAATGAGTATAGTCGTGCCAGAAAAAGTTTCAAATTTGGAAATTTCGATTTTGGGGTATGCGCCTTTAAGGGGGTCAAAAATCAAAATTGATGGAATTTAGACATGTGGGGTATTATTCGAAAGCTAAAAATGCGCTGATAAAGAATATGCAAAAATTTGAGAAAAATATCTAGAATTKAAGAAGTTACGGTAGATTTAAAATTTTGAAATAGGAAAAAAAATTTCTTTTCAACACATTTTTTTTCAACAATTCAATTCATAATTGAAACATAGTTTTAAGATAAATTGGAACAAGAAAAATTTAAGGAATGTTCTGGAAAGGGGTAATGTGAGAAGAAATGACATCACATGGGACGGATGGGGCTGAGGTGGAAGATGAGGACACACACATAAGTCGAACTGGTAAACATCACACTTAACTGTTGAGAGAGGAAGAGAGTGAAGAGACTTAGACAGTTAGAGAAAAAAACTAGAAAAATGTTTCGAAATCAGTTTAAAGAACCTTGGAATACCCAGTGATGATGACTCAGACACCCCCCCCCCCCCATGGGAGGCGTTTTGGTCCTTTTGTGGGAGAAAAATTATTTTGAAATTTTCAGAAAGCTCAAAATGCGATGAAAATCTTTTAGAAAAAATCCTTAAAATTTCAAAAAAAAAATTTTTTTTCAAAATTTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGAAAATAAAAACCACATTAG</pcr_primer_p1>
		<pcr_primer_p2>CAATTATGAATTGAATTGTTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>753</pcr_amplicon_size>
		<canonical_amplicon>TGAAGAAGTTACGGTAGATTTAAAATTTTGAAATAGGAAAAAAAATTTCTTTTCAACACATTTTTTTTCAACAATTCAATTCATAATTG</canonical_amplicon>
		<polymorphic_amplicon>TKAAGAAGTTACGGTAGATTTAAAATTTTGAAATAGGAAAAAAAATTTCTTTTCAACACATTTTTTTTCAACAATTCAATTCATAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33702</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>447023</contig_pos>
        <strand></strand>
        <context>TTGAAATAGG[A/G]AAAAAAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATATCTAGAATTGAAGAAGTTACGGTAGATTTAAAATTTTGAAATAGG</left_flank>
        <right_flank>AAAAAAATTTCTTTTCAACACATTTTTTTTCAACAATTCAATTCATAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGACCCAGGAGCACCATGTGCCTTTCAACTCCTCATTTAATTTCCTACTGTAACTTTCTTCATTTTTGCTGGAATTGAAAATTTTTCATAGTTTCGAATTGAAGACATTTTGGGCTTCAAAATGAGCCTAAACATGACTTGTTTTGGAAAATTTTAAATTTTGACCAACCACCCCCCCCCCCTGCCTTTTAAACCAATTTTTGAAACTACAGTAACTTGTCTCATTTCTGCCAGAAACTAGAAGTTTTAGTAGTTTTTAGATGAGCAAAACTAGCGCTTCAAAATGAGTATAGTCGTGCCAGAAAAAGTTTCAAATTTGGAAATTTCGATTTTGGGGTATGCGCCTTTAAGGGGGTCAAAAATCAAAATTGATGGAATTTAGACATGTGGGGTATTATTCGAAAGCTAAAAATGCGCTGATAAAGAATATGCAAAAATTTGAGAAAAATATCTAGAATTGAAGAAGTTACGGTAGATTTAAAATTTTGAAATAGGAAAAAAAATTTCTTTTCAACACATTTTTTTTCAACAATTCAATTCATAATTGAAACATAGTTTTAAGATAAATTGGAACAAGAAAAATTTAAGGAATGTTCTGGAAAGGGGTAATGTGAGAAGAAATGACATCACATGGGACGGATGGGGCTGAGGTGGAAGATGAGGACACACACATAAGTCGAACTGGTAAACATCACACTTAACTGTTGAGAGAGGAAGAGAGTGAAGAGACTTAGACAGTTAGAGAAAAAAACTAGAAAAATGTTTCGAAATCAGTTTAAAGAACCTTGGAATACCCAGTGATGATGACTCAGACACCCCCCCCCCCCCATGGGAGGCGTTTTGGTCCTTTTGTGGGAGAAAAATTATTTTGAAATTTTCAGAAAGCTCAAAATGCGATGAAAATCTTTTAGAAAAAATCCTTAAAATTTCAAAAAAAAAATTTTTTTTCAAAATTTCAAAAAAAAAATTTTTTTGGAATATTTTTTCGGATAATTT</canonical>
            <polymorphic>TTTTTGACCCAGGAGCACCATGTGCCTTTCAACTCCTCATTTAATTTCCTACTGTAACTTTCTTCATTTTTGCTGGAATTGAAAATTTTTCATAGTTTCGAATTGAAGACATTTTGGGCTTCAAAATGAGCCTAAACATGACTTGTTTTGGAAAATTTTAAATTTTGACCAACCACCCCCCCCCCCTGCCTTTTAAACCAATTTTTGAAACTACAGTAACTTGTCTCATTTCTGCCAGAAACTAGAAGTTTTAGTAGTTTTTAGATGAGCAAAACTAGCGCTTCAAAATGAGTATAGTCGTGCCAGAAAAAGTTTCAAATTTGGAAATTTCGATTTTGGGGTATGCGCCTTTAAGGGGGTCAAAAATCAAAATTGATGGAATTTAGACATGTGGGGTATTATTCGAAAGCTAAAAATGCGCTGATAAAGAATATGCAAAAATTTGAGAAAAATATCTAGAATTGAAGAAGTTACGGTAGATTTAAAATTTTGAAATAGGRAAAAAAATTTCTTTTCAACACATTTTTTTTCAACAATTCAATTCATAATTGAAACATAGTTTTAAGATAAATTGGAACAAGAAAAATTTAAGGAATGTTCTGGAAAGGGGTAATGTGAGAAGAAATGACATCACATGGGACGGATGGGGCTGAGGTGGAAGATGAGGACACACACATAAGTCGAACTGGTAAACATCACACTTAACTGTTGAGAGAGGAAGAGAGTGAAGAGACTTAGACAGTTAGAGAAAAAAACTAGAAAAATGTTTCGAAATCAGTTTAAAGAACCTTGGAATACCCAGTGATGATGACTCAGACACCCCCCCCCCCCCATGGGAGGCGTTTTGGTCCTTTTGTGGGAGAAAAATTATTTTGAAATTTTCAGAAAGCTCAAAATGCGATGAAAATCTTTTAGAAAAAATCCTTAAAATTTCAAAAAAAAAATTTTTTTTCAAAATTTCAAAAAAAAAATTTTTTTGGAATATTTTTTCGGATAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGAAAATAAAAACCACATTAG</pcr_primer_p1>
		<pcr_primer_p2>TTGTTCCAATTTATCTTAAAACTATG</pcr_primer_p2>
		<pcr_amplicon_size>782</pcr_amplicon_size>
		<canonical_amplicon>GAAAAAAAATTTCTTTTCAACACATTTTTTTTCAACAATTCAATTCATAATTGAAACATAGTTTTAAGATAAATTGGAACAA</canonical_amplicon>
		<polymorphic_amplicon>GRAAAAAAATTTCTTTTCAACACATTTTTTTTCAACAATTCAATTCATAATTGAAACATAGTTTTAAGATAAATTGGAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33703</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>462922</contig_pos>
        <strand>-</strand>
        <context>AATGCGGTTT[G/T/A/C]AAGTTAGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T/A/C</alleles>
        <left_flank>AGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTT</left_flank>
        <right_flank>AAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGCTCATTTTGAAGCTCTTTTTTTTGCTGAATTTTAAATTTTAAATTATTTTGAATCGAGTCCTACGGTAGAACAACTGTTTCGGGCCTAGAAATTGCGAAAGTTTTCGCGCTGCAAAGAAAAGAAAAAGGAGCAAAATAAATTGAATTTCGAATTTCGCGAATTCAGAAGACGTTGACAGATTCAGAAGACGTGTGTCGTGTAGGAGTGAAAGAAGAAGACAGATTCAATATGCATGGAAGAGACATGAAAAAGATTTGGAATTTGAAATGAAATCTCAGCCTTTTCTTTGTGTGTAGTTGTCAGAAAATTTCCCAATTTTGTACACTTTTTCGGACCAAATTTTCTATTCATTGGAAACATTTTTTGAAACATTTTACCTTTCCTTTTTTTGCGGGTTAAACCAGAAAAAAGACTCAAATTTTGAGCCAAAAATTTTCTGAAAAAAAGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTA</canonical>
            <polymorphic>AGGCTCATTTTGAAGCTCTTTTTTTTGCTGAATTTTAAATTTTAAATTATTTTGAATCGAGTCCTACGGTAGAACAACTGTTTCGGGCCTAGAAATTGCGAAAGTTTTCGCGCTGCAAAGAAAAGAAAAAGGAGCAAAATAAATTGAATTTCGAATTTCGCGAATTCAGAAGACGTTGACAGATTCAGAAGACGTGTGTCGTGTAGGAGTGAAAGAAGAAGACAGATTCAATATGCATGGAAGAGACATGAAAAAGATTTGGAATTTGAAATGAAATCTCAGCCTTTTCTTTGTGTGTAGTTGTCAGAAAATTTCCCAATTTTGTACACTTTTTCGGACCAAATTTTCTATTCATTGGAAACATTTTTTGAAACATTTTACCTTTCCTTTTTTTGCGGGTTAAACCAGAAAAAAGACTCAAATTTTGAGCCAAAAATTTTCTGAAAAAAAGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTKAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 456 36 7</canonical_bands>
                <polymorphic_bands>957 36 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>427 358 88 75 35 10 7</canonical_bands>
                <polymorphic_bands>437 358 88 75 35 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGACCAAATTTTCTATTCATTG</pcr_primer_p1>
		<pcr_primer_p2>CCTAGAAACTGCAAAAGTTAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGACCAAATTTTCTATTCATTGGAAACATTTTTTGAAACATTTTACCTTTCCTTTTTTTGCGGGTTAAACCAGAAAAAAGACTCAAATTTTGAGCCAAAAATTTTCTGAAAAAAAGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGG</canonical_amplicon>
		<polymorphic_amplicon>GGACCAAATTTTCTATTCATTGGAAACATTTTTTGAAACATTTTACCTTTCCTTTTTTTGCGGGTTAAACCAGAAAAAAGACTCAAATTTTGAGCCAAAAATTTTCTGAAAAAAAGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTKAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33704</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>462952</contig_pos>
        <strand>-</strand>
        <context>AAAGCCGCGT[C/T/A/G]AATTAGTCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T/A/G</alleles>
        <left_flank>TCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGT</left_flank>
        <right_flank>AATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTAAATTTTAAATTATTTTGAATCGAGTCCTACGGTAGAACAACTGTTTCGGGCCTAGAAATTGCGAAAGTTTTCGCGCTGCAAAGAAAAGAAAAAGGAGCAAAATAAATTGAATTTCGAATTTCGCGAATTCAGAAGACGTTGACAGATTCAGAAGACGTGTGTCGTGTAGGAGTGAAAGAAGAAGACAGATTCAATATGCATGGAAGAGACATGAAAAAGATTTGGAATTTGAAATGAAATCTCAGCCTTTTCTTTGTGTGTAGTTGTCAGAAAATTTCCCAATTTTGTACACTTTTTCGGACCAAATTTTCTATTCATTGGAAACATTTTTTGAAACATTTTACCTTTCCTTTTTTTGCGGGTTAAACCAGAAAAAAGACTCAAATTTTGAGCCAAAAATTTTCTGAAAAAAAGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATT</canonical>
            <polymorphic>AATTTTAAATTTTAAATTATTTTGAATCGAGTCCTACGGTAGAACAACTGTTTCGGGCCTAGAAATTGCGAAAGTTTTCGCGCTGCAAAGAAAAGAAAAAGGAGCAAAATAAATTGAATTTCGAATTTCGCGAATTCAGAAGACGTTGACAGATTCAGAAGACGTGTGTCGTGTAGGAGTGAAAGAAGAAGACAGATTCAATATGCATGGAAGAGACATGAAAAAGATTTGGAATTTGAAATGAAATCTCAGCCTTTTCTTTGTGTGTAGTTGTCAGAAAATTTCCCAATTTTGTACACTTTTTCGGACCAAATTTTCTATTCATTGGAAACATTTTTTGAAACATTTTACCTTTCCTTTTTTTGCGGGTTAAACCAGAAAAAAGACTCAAATTTTGAGCCAAAAATTTTCTGAAAAAAAGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTYAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGACCAAATTTTCTATTCATTG</pcr_primer_p1>
		<pcr_primer_p2>CCTAGAAACTGCAAAAGTTAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGACCAAATTTTCTATTCATTGGAAACATTTTTTGAAACATTTTACCTTTCCTTTTTTTGCGGGTTAAACCAGAAAAAAGACTCAAATTTTGAGCCAAAAATTTTCTGAAAAAAAGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGG</canonical_amplicon>
		<polymorphic_amplicon>GGACCAAATTTTCTATTCATTGGAAACATTTTTTGAAACATTTTACCTTTCCTTTTTTTGCGGGTTAAACCAGAAAAAAGACTCAAATTTTGAGCCAAAAATTTTCTGAAAAAAAGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTYAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33705</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>463019</contig_pos>
        <strand>-</strand>
        <context>CACCGTATGC[A/T]TTTTCGTGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGC</left_flank>
        <right_flank>TTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGAAAGTTTTCGCGCTGCAAAGAAAAGAAAAAGGAGCAAAATAAATTGAATTTCGAATTTCGCGAATTCAGAAGACGTTGACAGATTCAGAAGACGTGTGTCGTGTAGGAGTGAAAGAAGAAGACAGATTCAATATGCATGGAAGAGACATGAAAAAGATTTGGAATTTGAAATGAAATCTCAGCCTTTTCTTTGTGTGTAGTTGTCAGAAAATTTCCCAATTTTGTACACTTTTTCGGACCAAATTTTCTATTCATTGGAAACATTTTTTGAAACATTTTACCTTTCCTTTTTTTGCGGGTTAAACCAGAAAAAAGACTCAAATTTTGAGCCAAAAATTTTCTGAAAAAAAGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGAC</canonical>
            <polymorphic>GCGAAAGTTTTCGCGCTGCAAAGAAAAGAAAAAGGAGCAAAATAAATTGAATTTCGAATTTCGCGAATTCAGAAGACGTTGACAGATTCAGAAGACGTGTGTCGTGTAGGAGTGAAAGAAGAAGACAGATTCAATATGCATGGAAGAGACATGAAAAAGATTTGGAATTTGAAATGAAATCTCAGCCTTTTCTTTGTGTGTAGTTGTCAGAAAATTTCCCAATTTTGTACACTTTTTCGGACCAAATTTTCTATTCATTGGAAACATTTTTTGAAACATTTTACCTTTCCTTTTTTTGCGGGTTAAACCAGAAAAAAGACTCAAATTTTGAGCCAAAAATTTTCTGAAAAAAAGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCWTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACATTTTACCTTTCCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGCGTTAGAAGTTACAAATGAC</pcr_primer_p2>
		<pcr_amplicon_size>288</pcr_amplicon_size>
		<canonical_amplicon>GAAACATTTTACCTTTCCTTTTTTTGCGGGTTAAACCAGAAAAAAGACTCAAATTTTGAGCCAAAAATTTTCTGAAAAAAAGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTT</canonical_amplicon>
		<polymorphic_amplicon>GAAACATTTTACCTTTCCTTTTTTTGCGGGTTAAACCAGAAAAAAGACTCAAATTTTGAGCCAAAAATTTTCTGAAAAAAAGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCWTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33706</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>463056</contig_pos>
        <strand>-</strand>
        <context>TTTTATTTTT[A/C/G/T]GTCATTTGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C/G/T</alleles>
        <left_flank>GGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTT</left_flank>
        <right_flank>GTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAATAAATTGAATTTCGAATTTCGCGAATTCAGAAGACGTTGACAGATTCAGAAGACGTGTGTCGTGTAGGAGTGAAAGAAGAAGACAGATTCAATATGCATGGAAGAGACATGAAAAAGATTTGGAATTTGAAATGAAATCTCAGCCTTTTCTTTGTGTGTAGTTGTCAGAAAATTTCCCAATTTTGTACACTTTTTCGGACCAAATTTTCTATTCATTGGAAACATTTTTTGAAACATTTTACCTTTCCTTTTTTTGCGGGTTAAACCAGAAAAAAGACTCAAATTTTGAGCCAAAAATTTTCTGAAAAAAAGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATA</canonical>
            <polymorphic>CAAAATAAATTGAATTTCGAATTTCGCGAATTCAGAAGACGTTGACAGATTCAGAAGACGTGTGTCGTGTAGGAGTGAAAGAAGAAGACAGATTCAATATGCATGGAAGAGACATGAAAAAGATTTGGAATTTGAAATGAAATCTCAGCCTTTTCTTTGTGTGTAGTTGTCAGAAAATTTCCCAATTTTGTACACTTTTTCGGACCAAATTTTCTATTCATTGGAAACATTTTTTGAAACATTTTACCTTTCCTTTTTTTGCGGGTTAAACCAGAAAAAAGACTCAAATTTTGAGCCAAAAATTTTCTGAAAAAAAGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTMGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACACTAGTGGCCTAACTTTTG</pcr_primer_p1>
		<pcr_primer_p2>AATGCCAAAACAAACTGTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATT</canonical_amplicon>
		<polymorphic_amplicon>ATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTMGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33707</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>463122</contig_pos>
        <strand>-</strand>
        <context>GAAACCATCC[C/T/G/A]AAATACYGCG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T/G/A</alleles>
        <left_flank>TAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCC</left_flank>
        <right_flank>AAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGTAGGAGTGAAAGAAGAAGACAGATTCAATATGCATGGAAGAGACATGAAAAAGATTTGGAATTTGAAATGAAATCTCAGCCTTTTCTTTGTGTGTAGTTGTCAGAAAATTTCCCAATTTTGTACACTTTTTCGGACCAAATTTTCTATTCATTGGAAACATTTTTTGAAACATTTTACCTTTCCTTTTTTTGCGGGTTAAACCAGAAAAAAGACTCAAATTTTGAGCCAAAAATTTTCTGAAAAAAAGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTC</canonical>
            <polymorphic>GTGTAGGAGTGAAAGAAGAAGACAGATTCAATATGCATGGAAGAGACATGAAAAAGATTTGGAATTTGAAATGAAATCTCAGCCTTTTCTTTGTGTGTAGTTGTCAGAAAATTTCCCAATTTTGTACACTTTTTCGGACCAAATTTTCTATTCATTGGAAACATTTTTTGAAACATTTTACCTTTCCTTTTTTTGCGGGTTAAACCAGAAAAAAGACTCAAATTTTGAGCCAAAAATTTTCTGAAAAAAAGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCYAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>248 160 151 106 106 102 97 30</canonical_bands>
                <polymorphic_bands>311 248 106 106 102 97 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCGTGTTTTTAGCATTATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AGACTAGTTGACATGGTTTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCT</canonical_amplicon>
		<polymorphic_amplicon>TTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCYAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33708</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>463129</contig_pos>
        <strand>-</strand>
        <context>TCCYAAATAC[C/T/A/G]GCGAAATGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T/A/G</alleles>
        <left_flank>TCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATAC</left_flank>
        <right_flank>GCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGAAAGAAGAAGACAGATTCAATATGCATGGAAGAGACATGAAAAAGATTTGGAATTTGAAATGAAATCTCAGCCTTTTCTTTGTGTGTAGTTGTCAGAAAATTTCCCAATTTTGTACACTTTTTCGGACCAAATTTTCTATTCATTGGAAACATTTTTTGAAACATTTTACCTTTCCTTTTTTTGCGGGTTAAACCAGAAAAAAGACTCAAATTTTGAGCCAAAAATTTTCTGAAAAAAAGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAAT</canonical>
            <polymorphic>AGTGAAAGAAGAAGACAGATTCAATATGCATGGAAGAGACATGAAAAAGATTTGGAATTTGAAATGAAATCTCAGCCTTTTCTTTGTGTGTAGTTGTCAGAAAATTTCCCAATTTTGTACACTTTTTCGGACCAAATTTTCTATTCATTGGAAACATTTTTTGAAACATTTTACCTTTCCTTTTTTTGCGGGTTAAACCAGAAAAAAGACTCAAATTTTGAGCCAAAAATTTTCTGAAAAAAAGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACYGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGTGTTTTTAGCATTATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AGACTAGTTGACATGGTTTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCT</canonical_amplicon>
		<polymorphic_amplicon>TTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACYGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33709</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>463188</contig_pos>
        <strand>-</strand>
        <context>GGCCATTCGT[C/G]TAATTTMGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGT</left_flank>
        <right_flank>TAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAATGAAATCTCAGCCTTTTCTTTGTGTGTAGTTGTCAGAAAATTTCCCAATTTTGTACACTTTTTCGGACCAAATTTTCTATTCATTGGAAACATTTTTTGAAACATTTTACCTTTCCTTTTTTTGCGGGTTAAACCAGAAAAAAGACTCAAATTTTGAGCCAAAAATTTTCTGAAAAAAAGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATCGAGATTTTCGTGTCCAAATT</canonical>
            <polymorphic>TGAAATGAAATCTCAGCCTTTTCTTTGTGTGTAGTTGTCAGAAAATTTCCCAATTTTGTACACTTTTTCGGACCAAATTTTCTATTCATTGGAAACATTTTTTGAAACATTTTACCTTTCCTTTTTTTGCGGGTTAAACCAGAAAAAAGACTCAAATTTTGAGCCAAAAATTTTCTGAAAAAAAGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTSTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATCGAGATTTTCGTGTCCAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGTGTTTTTAGCATTATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AGACTAGTTGACATGGTTTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCT</canonical_amplicon>
		<polymorphic_amplicon>TTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTSTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33710</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>463195</contig_pos>
        <strand>-</strand>
        <context>CGTSTAATTT[A/C/G/T]GAAAATTTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C/G/T</alleles>
        <left_flank>AATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTT</left_flank>
        <right_flank>GAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCTCAGCCTTTTCTTTGTGTGTAGTTGTCAGAAAATTTCCCAATTTTGTACACTTTTTCGGACCAAATTTTCTATTCATTGGAAACATTTTTTGAAACATTTTACCTTTCCTTTTTTTGCGGGTTAAACCAGAAAAAAGACTCAAATTTTGAGCCAAAAATTTTCTGAAAAAAAGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATCGAGATTTTCGTGTCCAAATTTTTATTA</canonical>
            <polymorphic>AAATCTCAGCCTTTTCTTTGTGTGTAGTTGTCAGAAAATTTCCCAATTTTGTACACTTTTTCGGACCAAATTTTCTATTCATTGGAAACATTTTTTGAAACATTTTACCTTTCCTTTTTTTGCGGGTTAAACCAGAAAAAAGACTCAAATTTTGAGCCAAAAATTTTCTGAAAAAAAGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTMGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATCGAGATTTTCGTGTCCAAATTTTTATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGTGTTTTTAGCATTATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AGACTAGTTGACATGGTTTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCT</canonical_amplicon>
		<polymorphic_amplicon>TTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTMGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33711</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>463224</contig_pos>
        <strand>-</strand>
        <context>TTGGCATTTT[A/G]TGCGTTTTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTT</left_flank>
        <right_flank>TGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCAGAAAATTTCCCAATTTTGTACACTTTTTCGGACCAAATTTTCTATTCATTGGAAACATTTTTTGAAACATTTTACCTTTCCTTTTTTTGCGGGTTAAACCAGAAAAAAGACTCAAATTTTGAGCCAAAAATTTTCTGAAAAAAAGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATCGAGATTTTCGTGTCCAAATTTTTATTATTTTCGAAGAAAAACAAAATTGAAAAACC</canonical>
            <polymorphic>GTCAGAAAATTTCCCAATTTTGTACACTTTTTCGGACCAAATTTTCTATTCATTGGAAACATTTTTTGAAACATTTTACCTTTCCTTTTTTTGCGGGTTAAACCAGAAAAAAGACTCAAATTTTGAGCCAAAAATTTTCTGAAAAAAAGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTRTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATCGAGATTTTCGTGTCCAAATTTTTATTATTTTCGAAGAAAAACAAAATTGAAAAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCTAGCTTTTCCAATTTCTA</pcr_primer_p1>
		<pcr_primer_p2>TGTTTCCATTATTTTGAGTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACA</canonical_amplicon>
		<polymorphic_amplicon>GCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTRTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33712</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>463240</contig_pos>
        <strand>-</strand>
        <context>TTTGAGAAGT[C/T]AAAATTCGCG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGT</left_flank>
        <right_flank>AAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTGTACACTTTTTCGGACCAAATTTTCTATTCATTGGAAACATTTTTTGAAACATTTTACCTTTCCTTTTTTTGCGGGTTAAACCAGAAAAAAGACTCAAATTTTGAGCCAAAAATTTTCTGAAAAAAAGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATCGAGATTTTCGTGTCCAAATTTTTATTATTTTCGAAGAAAAACAAAATTGAAAAACCGGAAAAGCGACAAAAA</canonical>
            <polymorphic>ATTTTGTACACTTTTTCGGACCAAATTTTCTATTCATTGGAAACATTTTTTGAAACATTTTACCTTTCCTTTTTTTGCGGGTTAAACCAGAAAAAAGACTCAAATTTTGAGCCAAAAATTTTCTGAAAAAAAGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTYAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATCGAGATTTTCGTGTCCAAATTTTTATTATTTTCGAAGAAAAACAAAATTGAAAAACCGGAAAAGCGACAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>148 84 80 70 68 68 67 60 59 55 52 45 32 27 26 26 17 10 6</canonical_bands>
                <polymorphic_bands>148 139 80 70 68 68 67 60 59 52 45 32 27 26 26 17 10 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCTAGCTTTTCCAATTTCTA</pcr_primer_p1>
		<pcr_primer_p2>TGTTTCCATTATTTTGAGTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACA</canonical_amplicon>
		<polymorphic_amplicon>GCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTYAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33713</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>463287</contig_pos>
        <strand>-</strand>
        <context>AAGCTAAAAT[G/T]RACTYGTGGC</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAAT</left_flank>
        <right_flank>TACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGAAACATTTTACCTTTCCTTTTTTTGCGGGTTAAACCAGAAAAAAGACTCAAATTTTGAGCCAAAAATTTTCTGAAAAAAAGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATCGAGATTTTCGTGTCCAAATTTTTATTATTTTCGAAGAAAAACAAAATTGAAAAACCGGAAAAGCGACAAAAAGTAAAGATCACATTCGGAGAAGGGAAGGGGCGCGGTGTGGTGGAAAT</canonical>
            <polymorphic>TTTTGAAACATTTTACCTTTCCTTTTTTTGCGGGTTAAACCAGAAAAAAGACTCAAATTTTGAGCCAAAAATTTTCTGAAAAAAAGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATKTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATCGAGATTTTCGTGTCCAAATTTTTATTATTTTCGAAGAAAAACAAAATTGAAAAACCGGAAAAGCGACAAAAAGTAAAGATCACATTCGGAGAAGGGAAGGGGCGCGGTGTGGTGGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCTAGCTTTTCCAATTTCTA</pcr_primer_p1>
		<pcr_primer_p2>TGTTTCCATTATTTTGAGTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACA</canonical_amplicon>
		<polymorphic_amplicon>GCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATKTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33714</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>463288</contig_pos>
        <strand>-</strand>
        <context>AGCTAAAATK[A/G]ACTYGTGGCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATC</left_flank>
        <right_flank>ACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAAACATTTTACCTTTCCTTTTTTTGCGGGTTAAACCAGAAAAAAGACTCAAATTTTGAGCCAAAAATTTTCTGAAAAAAAGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATCGAGATTTTCGTGTCCAAATTTTTATTATTTTCGAAGAAAAACAAAATTGAAAAACCGGAAAAGCGACAAAAAGTAAAGATCACATTCGGAGAAGGGAAGGGGCGCGGTGTGGTGGAAATT</canonical>
            <polymorphic>TTTGAAACATTTTACCTTTCCTTTTTTTGCGGGTTAAACCAGAAAAAAGACTCAAATTTTGAGCCAAAAATTTTCTGAAAAAAAGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCRACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATCGAGATTTTCGTGTCCAAATTTTTATTATTTTCGAAGAAAAACAAAATTGAAAAACCGGAAAAGCGACAAAAAGTAAAGATCACATTCGGAGAAGGGAAGGGGCGCGGTGTGGTGGAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCTAGCTTTTCCAATTTCTA</pcr_primer_p1>
		<pcr_primer_p2>TGTTTCCATTATTTTGAGTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACA</canonical_amplicon>
		<polymorphic_amplicon>GCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCRACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33715</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>463292</contig_pos>
        <strand>-</strand>
        <context>AAAATKRACT[C/T]GTGGCCTAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACT</left_flank>
        <right_flank>GTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACATTTTACCTTTCCTTTTTTTGCGGGTTAAACCAGAAAAAAGACTCAAATTTTGAGCCAAAAATTTTCTGAAAAAAAGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATCGAGATTTTCGTGTCCAAATTTTTATTATTTTCGAAGAAAAACAAAATTGAAAAACCGGAAAAGCGACAAAAAGTAAAGATCACATTCGGAGAAGGGAAGGGGCGCGGTGTGGTGGAAATTGTCA</canonical>
            <polymorphic>AAACATTTTACCTTTCCTTTTTTTGCGGGTTAAACCAGAAAAAAGACTCAAATTTTGAGCCAAAAATTTTCTGAAAAAAAGAGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTYGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATCGAGATTTTCGTGTCCAAATTTTTATTATTTTCGAAGAAAAACAAAATTGAAAAACCGGAAAAGCGACAAAAAGTAAAGATCACATTCGGAGAAGGGAAGGGGCGCGGTGTGGTGGAAATTGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCTAGCTTTTCCAATTTCTA</pcr_primer_p1>
		<pcr_primer_p2>TGTTTCCATTATTTTGAGTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACA</canonical_amplicon>
		<polymorphic_amplicon>GCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTYGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33716</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>463373</contig_pos>
        <strand>-</strand>
        <context>TTTGATATTT[A/G]AGATGCTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTT</left_flank>
        <right_flank>AGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATCGAGATTTTCGTGTCCAAATTTTTATTATTTTCGAAGAAAAACAAAATTGAAAAACCGGAAAAGCGACAAAAAGTAAAGATCACATTCGGAGAAGGGAAGGGGCGCGGTGTGGTGGAAATTGTCAGTAAGGCTTCCATTCGGTCGGGAAATCAATTTAGCCGACCGACCGACATCCGACCGTTTCCGTGCATTTGCGCGTCAACGT</canonical>
            <polymorphic>AGGTTCCAAAAAAAAATTTGCAGTGTTTTCCATCATTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTRAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATCGAGATTTTCGTGTCCAAATTTTTATTATTTTCGAAGAAAAACAAAATTGAAAAACCGGAAAAGCGACAAAAAGTAAAGATCACATTCGGAGAAGGGAAGGGGCGCGGTGTGGTGGAAATTGTCAGTAAGGCTTCCATTCGGTCGGGAAATCAATTTAGCCGACCGACCGACATCCGACCGTTTCCGTGCATTTGCGCGTCAACGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>276 160 151 102 96 88 87 30 10</canonical_bands>
                <polymorphic_bands>378 160 151 96 88 87 30 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACAGTTTGTTTTGGCATTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTCTAGGTCATTTCGCTTATT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTRAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33717</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>463408</contig_pos>
        <strand>-</strand>
        <context>ATGGAAACAA[A/T]GACRGAAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAA</left_flank>
        <right_flank>GACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATCGAGATTTTCGTGTCCAAATTTTTATTATTTTCGAAGAAAAACAAAATTGAAAAACCGGAAAAGCGACAAAAAGTAAAGATCACATTCGGAGAAGGGAAGGGGCGCGGTGTGGTGGAAATTGTCAGTAAGGCTTCCATTCGGTCGGGAAATCAATTTAGCCGACCGACCGACATCCGACCGTTTCCGTGCATTTGCGCGTCAACGTGTTTGCATACGCTGCATTGTATTTTACGACAAACT</canonical>
            <polymorphic>TTTAATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAWGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATCGAGATTTTCGTGTCCAAATTTTTATTATTTTCGAAGAAAAACAAAATTGAAAAACCGGAAAAGCGACAAAAAGTAAAGATCACATTCGGAGAAGGGAAGGGGCGCGGTGTGGTGGAAATTGTCAGTAAGGCTTCCATTCGGTCGGGAAATCAATTTAGCCGACCGACCGACATCCGACCGTTTCCGTGCATTTGCGCGTCAACGTGTTTGCATACGCTGCATTGTATTTTACGACAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTCCTAGGCCACTTATG</pcr_primer_p1>
		<pcr_primer_p2>TCAATGAATTTTTCACGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGA</canonical_amplicon>
		<polymorphic_amplicon>CATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAWGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33718</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>463412</contig_pos>
        <strand>-</strand>
        <context>AAACAAWGAC[A/G]GAAATCATTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGAC</left_flank>
        <right_flank>GAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATCGAGATTTTCGTGTCCAAATTTTTATTATTTTCGAAGAAAAACAAAATTGAAAAACCGGAAAAGCGACAAAAAGTAAAGATCACATTCGGAGAAGGGAAGGGGCGCGGTGTGGTGGAAATTGTCAGTAAGGCTTCCATTCGGTCGGGAAATCAATTTAGCCGACCGACCGACATCCGACCGTTTCCGTGCATTTGCGCGTCAACGTGTTTGCATACGCTGCATTGTATTTTACGACAAACTACTC</canonical>
            <polymorphic>ATGCGGTTTAAAGTTAGAAAAATAGCGTCAAAGCCGCGTAAATTAGTCTGAAACATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACRGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATCGAGATTTTCGTGTCCAAATTTTTATTATTTTCGAAGAAAAACAAAATTGAAAAACCGGAAAAGCGACAAAAAGTAAAGATCACATTCGGAGAAGGGAAGGGGCGCGGTGTGGTGGAAATTGTCAGTAAGGCTTCCATTCGGTCGGGAAATCAATTTAGCCGACCGACCGACATCCGACCGTTTCCGTGCATTTGCGCGTCAACGTGTTTGCATACGCTGCATTGTATTTTACGACAAACTACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTCCTAGGCCACTTATG</pcr_primer_p1>
		<pcr_primer_p2>TCAATGAATTTTTCACGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGA</canonical_amplicon>
		<polymorphic_amplicon>CATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACRGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33719</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>463466</contig_pos>
        <strand>-</strand>
        <context>GGCCTAACTT[A/C]TSCAYTTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTT</left_flank>
        <right_flank>TCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATCGAGATTTTCGTGTCCAAATTTTTATTATTTTCGAAGAAAAACAAAATTGAAAAACCGGAAAAGCGACAAAAAGTAAAGATCACATTCGGAGAAGGGAAGGGGCGCGGTGTGGTGGAAATTGTCAGTAAGGCTTCCATTCGGTCGGGAAATCAATTTAGCCGACCGACCGACATCCGACCGTTTCCGTGCATTTGCGCGTCAACGTGTTTGCATACGCTGCATTGTATTTTACGACAAACTACTCACTAAAAGCCTCGTTTGTCGTAAAATAAAGTGCTTCGTACGCAAAAATTCGTGT</canonical>
            <polymorphic>ATCTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTMTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATCGAGATTTTCGTGTCCAAATTTTTATTATTTTCGAAGAAAAACAAAATTGAAAAACCGGAAAAGCGACAAAAAGTAAAGATCACATTCGGAGAAGGGAAGGGGCGCGGTGTGGTGGAAATTGTCAGTAAGGCTTCCATTCGGTCGGGAAATCAATTTAGCCGACCGACCGACATCCGACCGTTTCCGTGCATTTGCGCGTCAACGTGTTTGCATACGCTGCATTGTATTTTACGACAAACTACTCACTAAAAGCCTCGTTTGTCGTAAAATAAAGTGCTTCGTACGCAAAAATTCGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACACTCAAAATAATGGAAACAA</pcr_primer_p1>
		<pcr_primer_p2>TATCAAGAAAATTGGTTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>AACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATA</canonical_amplicon>
		<polymorphic_amplicon>AACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTMTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33720</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>463468</contig_pos>
        <strand>-</strand>
        <context>CCTAACTTMT[C/G]CAYTTTCTAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGT</left_flank>
        <right_flank>CAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATCGAGATTTTCGTGTCCAAATTTTTATTATTTTCGAAGAAAAACAAAATTGAAAAACCGGAAAAGCGACAAAAAGTAAAGATCACATTCGGAGAAGGGAAGGGGCGCGGTGTGGTGGAAATTGTCAGTAAGGCTTCCATTCGGTCGGGAAATCAATTTAGCCGACCGACCGACATCCGACCGTTTCCGTGCATTTGCGCGTCAACGTGTTTGCATACGCTGCATTGTATTTTACGACAAACTACTCACTAAAAGCCTCGTTTGTCGTAAAATAAAGTGCTTCGTACGCAAAAATTCGTGTTT</canonical>
            <polymorphic>CTAAAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTSCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATCGAGATTTTCGTGTCCAAATTTTTATTATTTTCGAAGAAAAACAAAATTGAAAAACCGGAAAAGCGACAAAAAGTAAAGATCACATTCGGAGAAGGGAAGGGGCGCGGTGTGGTGGAAATTGTCAGTAAGGCTTCCATTCGGTCGGGAAATCAATTTAGCCGACCGACCGACATCCGACCGTTTCCGTGCATTTGCGCGTCAACGTGTTTGCATACGCTGCATTGTATTTTACGACAAACTACTCACTAAAAGCCTCGTTTGTCGTAAAATAAAGTGCTTCGTACGCAAAAATTCGTGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCATTAGAAATAAGCGAAATGA</pcr_primer_p1>
		<pcr_primer_p2>GATTTTTCAGACATTTTCAGATT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATC</canonical_amplicon>
		<polymorphic_amplicon>ATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTSCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33721</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>463471</contig_pos>
        <strand>-</strand>
        <context>AACTTMTSCA[C/T]TTTCTAGGCC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCA</left_flank>
        <right_flank>TTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATCGAGATTTTCGTGTCCAAATTTTTATTATTTTCGAAGAAAAACAAAATTGAAAAACCGGAAAAGCGACAAAAAGTAAAGATCACATTCGGAGAAGGGAAGGGGCGCGGTGTGGTGGAAATTGTCAGTAAGGCTTCCATTCGGTCGGGAAATCAATTTAGCCGACCGACCGACATCCGACCGTTTCCGTGCATTTGCGCGTCAACGTGTTTGCATACGCTGCATTGTATTTTACGACAAACTACTCACTAAAAGCCTCGTTTGTCGTAAAATAAAGTGCTTCGTACGCAAAAATTCGTGTTTTTA</canonical>
            <polymorphic>AAATACACTAGTGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAYTTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATCGAGATTTTCGTGTCCAAATTTTTATTATTTTCGAAGAAAAACAAAATTGAAAAACCGGAAAAGCGACAAAAAGTAAAGATCACATTCGGAGAAGGGAAGGGGCGCGGTGTGGTGGAAATTGTCAGTAAGGCTTCCATTCGGTCGGGAAATCAATTTAGCCGACCGACCGACATCCGACCGTTTCCGTGCATTTGCGCGTCAACGTGTTTGCATACGCTGCATTGTATTTTACGACAAACTACTCACTAAAAGCCTCGTTTGTCGTAAAATAAAGTGCTTCGTACGCAAAAATTCGTGTTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>177 138 106 100 83 72 58 53 44 35 28 21 21 21 20 14 9</canonical_bands>
                <polymorphic_bands>177 138 106 100 83 72 58 53 44 42 35 28 21 20 14 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTAGAAATAAGCGAAATGACCT</pcr_primer_p1>
		<pcr_primer_p2>GATTTTTCAGACATTTTCAGATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATC</canonical_amplicon>
		<polymorphic_amplicon>ATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAYTTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33722</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>463482</contig_pos>
        <strand>-</strand>
        <context>TTTCTAGGCC[A/T]TTRGTGTAAW</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCC</left_flank>
        <right_flank>TTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATCGAGATTTTCGTGTCCAAATTTTTATTATTTTCGAAGAAAAACAAAATTGAAAAACCGGAAAAGCGACAAAAAGTAAAGATCACATTCGGAGAAGGGAAGGGGCGCGGTGTGGTGGAAATTGTCAGTAAGGCTTCCATTCGGTCGGGAAATCAATTTAGCCGACCGACCGACATCCGACCGTTTCCGTGCATTTGCGCGTCAACGTGTTTGCATACGCTGCATTGTATTTTACGACAAACTACTCACTAAAAGCCTCGTTTGTCGTAAAATAAAGTGCTTCGTACGCAAAAATTCGTGTTTTTATGCGCAAAGGC</canonical>
            <polymorphic>TGGCCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCWTTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATCGAGATTTTCGTGTCCAAATTTTTATTATTTTCGAAGAAAAACAAAATTGAAAAACCGGAAAAGCGACAAAAAGTAAAGATCACATTCGGAGAAGGGAAGGGGCGCGGTGTGGTGGAAATTGTCAGTAAGGCTTCCATTCGGTCGGGAAATCAATTTAGCCGACCGACCGACATCCGACCGTTTCCGTGCATTTGCGCGTCAACGTGTTTGCATACGCTGCATTGTATTTTACGACAAACTACTCACTAAAAGCCTCGTTTGTCGTAAAATAAAGTGCTTCGTACGCAAAAATTCGTGTTTTTATGCGCAAAGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>373 150 139 117 107 23 22 22 22 22 3</canonical_bands>
                <polymorphic_bands>373 150 139 129 117 23 22 22 22 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGAAATAAGCGAAATGACCTA</pcr_primer_p1>
		<pcr_primer_p2>GATTTTTCAGACATTTTCAGATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATC</canonical_amplicon>
		<polymorphic_amplicon>TTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCWTTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33723</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>463485</contig_pos>
        <strand>-</strand>
        <context>CTAGGCCWTT[A/G]GTGTAAWTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATT</left_flank>
        <right_flank>GTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATCGAGATTTTCGTGTCCAAATTTTTATTATTTTCGAAGAAAAACAAAATTGAAAAACCGGAAAAGCGACAAAAAGTAAAGATCACATTCGGAGAAGGGAAGGGGCGCGGTGTGGTGGAAATTGTCAGTAAGGCTTCCATTCGGTCGGGAAATCAATTTAGCCGACCGACCGACATCCGACCGTTTCCGTGCATTTGCGCGTCAACGTGTTTGCATACGCTGCATTGTATTTTACGACAAACTACTCACTAAAAGCCTCGTTTGTCGTAAAATAAAGTGCTTCGTACGCAAAAATTCGTGTTTTTATGCGCAAAGGCACG</canonical>
            <polymorphic>CCTAACTTTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTRGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATCGAGATTTTCGTGTCCAAATTTTTATTATTTTCGAAGAAAAACAAAATTGAAAAACCGGAAAAGCGACAAAAAGTAAAGATCACATTCGGAGAAGGGAAGGGGCGCGGTGTGGTGGAAATTGTCAGTAAGGCTTCCATTCGGTCGGGAAATCAATTTAGCCGACCGACCGACATCCGACCGTTTCCGTGCATTTGCGCGTCAACGTGTTTGCATACGCTGCATTGTATTTTACGACAAACTACTCACTAAAAGCCTCGTTTGTCGTAAAATAAAGTGCTTCGTACGCAAAAATTCGTGTTTTTATGCGCAAAGGCACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGAAATAAGCGAAATGACCTA</pcr_primer_p1>
		<pcr_primer_p2>GATTTTTCAGACATTTTCAGATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATC</canonical_amplicon>
		<polymorphic_amplicon>TTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTRGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33724</snp_id>
        <super_contig>c008301243.Contig1</super_contig>
        <contig_pos>463492</contig_pos>
        <strand>-</strand>
        <context>WTTRGTGTAA[A/T]TTTGAAGGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAA</left_flank>
        <right_flank>TTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATCGAGATTTTCGTGTCCAAATTTTTATTATTTTCGAAGAAAAACAAAATTGAAAAACCGGAAAAGCGACAAAAAGTAAAGATCACATTCGGAGAAGGGAAGGGGCGCGGTGTGGTGGAAATTGTCAGTAAGGCTTCCATTCGGTCGGGAAATCAATTTAGCCGACCGACCGACATCCGACCGTTTCCGTGCATTTGCGCGTCAACGTGTTTGCATACGCTGCATTGTATTTTACGACAAACTACTCACTAAAAGCCTCGTTTGTCGTAAAATAAAGTGCTTCGTACGCAAAAATTCGTGTTTTTATGCGCAAAGGCACGAAATCGG</canonical>
            <polymorphic>TTTGCAGTTTCTAGGCCACCGTATGCTTTTTCGTGTTTTTAGCATTATTTTTTTTTTATTTTTGGTCATTTGTAACTTCTAACGCTTCTAAACACTCAAAACATGTAAAAAATAGCGTTGAAACCATCCGAAATACAGCGAAATGACCTAGAAATGAATTGGTGGCCTAGCTTTTCCAATTTCTAGGCCATTCGTCTAATTTGGAAAATTTACAGTTTGTTTTGGCATTTTCTGCGTTTTGAGAAGTGAAAATTCGCGTCAAAACCATGTCAACTAGTCTGAATAAGCTAAAATCTACTGGTGGCCTAACTTTTGCATTTCCTAGGCCACTTATGCGATTTTTTGGGTTTTTTTTTAATTTTGAGCATTTTTTGATATTTCAGATGCTTTGAAACACTCAAAATAATGGAAACAAAGACCGAAATCATTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAWTTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATCGAGATTTTCGTGTCCAAATTTTTATTATTTTCGAAGAAAAACAAAATTGAAAAACCGGAAAAGCGACAAAAAGTAAAGATCACATTCGGAGAAGGGAAGGGGCGCGGTGTGGTGGAAATTGTCAGTAAGGCTTCCATTCGGTCGGGAAATCAATTTAGCCGACCGACCGACATCCGACCGTTTCCGTGCATTTGCGCGTCAACGTGTTTGCATACGCTGCATTGTATTTTACGACAAACTACTCACTAAAAGCCTCGTTTGTCGTAAAATAAAGTGCTTCGTACGCAAAAATTCGTGTTTTTATGCGCAAAGGCACGAAATCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>273 248 206 141 53 44 35</canonical_bands>
                <polymorphic_bands>301 273 206 141 44 35</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>156 138 106 100 83 72 58 53 44 35 35 28 21 21 21 20 9</canonical_bands>
                <polymorphic_bands>156 138 106 100 83 74 72 58 44 35 35 28 21 21 20 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGAAATAAGCGAAATGACCTA</pcr_primer_p1>
		<pcr_primer_p2>GATTTTTCAGACATTTTCAGATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAATTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATC</canonical_amplicon>
		<polymorphic_amplicon>TTAGAAATAAGCGAAATGACCTAGAAATGAATTGGTGGCCTAACTTGTCCAATTTCTAGGCCATTTGTGTAAWTTTGAAGGTTTTCAGCGATTTCGAGACATTTCAAGCTTTGAAAACGTGAAAAATTCATTGAATACGTCTAAAAAGACCGAAAATCTACTGGTGGCCTAGCATTTTAGGGTTCCTAGGCCACCTTTTTTTCAACCAATTTTCTTGATATTTTTTAATCTGAAAATGTCTGAAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33725</snp_id>
        <super_contig>c008401196.Contig2</super_contig>
        <contig_pos>42455</contig_pos>
        <strand>+</strand>
        <context>CTTCTGAGCA[A/C]GGTCCGACAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCTCCTTCTCACACTGATGCAAAGTTGGGCAATCGGAATCTTCTGAGCA</left_flank>
        <right_flank>GGTCCGACAGAGCGGAGACCCGATGAGCATTTCTTAAATTACGGTTTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACCTTCGTCATTCTTCCATCCTATCGGGACACGATCATGTGTGGGTAAGTAAAGCTACAGTATCACAGTTTCAGCTGCTGCGTTTGTTATTTTTACTGCTTACAGGTGCAAATATCGCCGTTTCCAACGTCGAGTTCAAATGGGCGCATTAGCAGCACCGACTGCTCAGGGAGTTACTCAGCAGATTAGGGTACTGTAGATAATAAACGCTTTCCTTAAAACTAAAATTTAAGATCTCGGAACCCGAAAAACTCCCAGTCGAATTCATCAAAGAGCCCGAGCAAAAAGTCCCACTTGAACCAATGTTCGTCACCACCCACAGTGCCGATTCAAAACGCCCACGTCCAGCCTACCCCGTTCAAACTTATCCGGACAAGTATTGAAAGTTCTTTATTGGCATAAATAAATACGTTGCCATGTATAAATTATAACAATAAATAACAACACTGCTCCTTCTCACACTGATGCAAAGTTGGGCAATCGGAATCTTCTGAGCACGGTCCGACAGAGCGGAGACCCGATGAGCATTTCTTAAATTACGGTTTTCATGTTTATCAGCATCAAGTCTCACCCTATCTTCGTTTTCCTCCACATATGGGTCCACTGTGACCATTTCTTCGATAATGAGCTCTGGAGTAGTTGTGGTAGTGCGCGAACGTTCAATCAACTTGTTCCATTCCTCGAGTTCCGCGGATTTCATCTAAATATATTTTTTTCGCTCAAAAAACAGTATCTGGTCAACCTAGTAGCTTCAACCTACCACATCATTCTCATCATCCTCTCCATTCTCGCCAACCGGCGTCACAGTAGTCGTGGCCACCACCAGCTTCCTCTTCCCTTTCTTTTTTCTCGTTGTCTCCCCATCTATCACATCTGGAGCCTCGGTAGTCGACATACCTCCTAGAATGCTGACAAATGGAGTCGTACAGCATGCACCGTGTGTACAAGTTCCACCCAATGCGATACAAATTGAGTCTTGATCGAGGCGACACTGTCCG</canonical>
            <polymorphic>TCACCTTCGTCATTCTTCCATCCTATCGGGACACGATCATGTGTGGGTAAGTAAAGCTACAGTATCACAGTTTCAGCTGCTGCGTTTGTTATTTTTACTGCTTACAGGTGCAAATATCGCCGTTTCCAACGTCGAGTTCAAATGGGCGCATTAGCAGCACCGACTGCTCAGGGAGTTACTCAGCAGATTAGGGTACTGTAGATAATAAACGCTTTCCTTAAAACTAAAATTTAAGATCTCGGAACCCGAAAAACTCCCAGTCGAATTCATCAAAGAGCCCGAGCAAAAAGTCCCACTTGAACCAATGTTCGTCACCACCCACAGTGCCGATTCAAAACGCCCACGTCCAGCCTACCCCGTTCAAACTTATCCGGACAAGTATTGAAAGTTCTTTATTGGCATAAATAAATACGTTGCCATGTATAAATTATAACAATAAATAACAACACTGCTCCTTCTCACACTGATGCAAAGTTGGGCAATCGGAATCTTCTGAGCAMGGTCCGACAGAGCGGAGACCCGATGAGCATTTCTTAAATTACGGTTTTCATGTTTATCAGCATCAAGTCTCACCCTATCTTCGTTTTCCTCCACATATGGGTCCACTGTGACCATTTCTTCGATAATGAGCTCTGGAGTAGTTGTGGTAGTGCGCGAACGTTCAATCAACTTGTTCCATTCCTCGAGTTCCGCGGATTTCATCTAAATATATTTTTTTCGCTCAAAAAACAGTATCTGGTCAACCTAGTAGCTTCAACCTACCACATCATTCTCATCATCCTCTCCATTCTCGCCAACCGGCGTCACAGTAGTCGTGGCCACCACCAGCTTCCTCTTCCCTTTCTTTTTTCTCGTTGTCTCCCCATCTATCACATCTGGAGCCTCGGTAGTCGACATACCTCCTAGAATGCTGACAAATGGAGTCGTACAGCATGCACCGTGTGTACAAGTTCCACCCAATGCGATACAAATTGAGTCTTGATCGAGGCGACACTGTCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>499 368 133</canonical_bands>
                <polymorphic_bands>632 368</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>368 279 220 133</canonical_bands>
                <polymorphic_bands>368 353 279</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>178 131 128 126 124 77 64 61 56 42 8 5</canonical_bands>
                <polymorphic_bands>220 131 128 126 124 77 64 61 56 8 5</polymorphic_bands>
            </assay>
            <assay>
                <site>CGGWCCG</site>
                <isoschizomers>
                    <enzyme>CpoI</enzyme>
                    <enzyme>CspI</enzyme>
                    <enzyme>Rsr2I</enzyme>
                    <enzyme>RsrII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>136 112 105 73 65 49 48 43 42 38 36 36 30 22 21 19 17 13 12 11 11 10 7 6 5 5 5 4 4 3 3 3 2 2 2</canonical_bands>
                <polymorphic_bands>136 112 109 105 65 49 48 43 42 38 36 30 22 21 19 17 13 12 11 11 10 7 6 5 5 5 4 4 3 3 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGAAAGTTCTTTATTGGCATA</pcr_primer_p1>
		<pcr_primer_p2>ATTATCGAAGAAATGGTCACAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTGAAAGTTCTTTATTGGCATAAATAAATACGTTGCCATGTATAAATTATAACAATAAATAACAACACTGCTCCTTCTCACACTGATGCAAAGTTGGGCAATCGGAATCTTCTGAGCACGGTCCGACAGAGCGGAGACCCGATGAGCATTTCTTAAATTACGGTTTTCATGTTTATCAGCATCAAGTCTCACCCTATCTTCGTTTTCCTCCACATATGGGTCCACTGTGACCATTTCTTCGATAAT</canonical_amplicon>
		<polymorphic_amplicon>ATTGAAAGTTCTTTATTGGCATAAATAAATACGTTGCCATGTATAAATTATAACAATAAATAACAACACTGCTCCTTCTCACACTGATGCAAAGTTGGGCAATCGGAATCTTCTGAGCAMGGTCCGACAGAGCGGAGACCCGATGAGCATTTCTTAAATTACGGTTTTCATGTTTATCAGCATCAAGTCTCACCCTATCTTCGTTTTCCTCCACATATGGGTCCACTGTGACCATTTCTTCGATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33726</snp_id>
        <super_contig>c008401196.Contig2</super_contig>
        <contig_pos>50544</contig_pos>
        <strand></strand>
        <context>gtatgtgggg[C/T]ytttctatta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATCTTTTACAGAAACTGAAATAATTGAGCTCAAACTGGAGTATGTGGGG</left_flank>
        <right_flank>CTTTCTATTACAGGTTTTCCTGTAAGATTCGAAACTTTTGAAAATCGAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAATTGTCCGTCAATGTCGTGTATTAAACAGACACTTGGTTTGGATACGGTAAGACAGACATACAAATTTTATGGGTTCAGAAGAGAGGGAGAAAAGAACCAAATGTTTTGACAACAGAAACCCCCTCACAAAGATTAGTCATGGTTCGCTGGCGTTTTGATGTTGCGCGTGGTATTGTGGTATGGCCAGAGGTAGATGGGACGGGACTGGGGTACCTTTAGCGCGTTTTTGAGCATTTTAGCTCATTTCTGAAAAAATATCTAGACAGACAGGTGTTCGGAATTCGCTTCGAAAATACTATTAAACCTGTAATAGAAGGGCACCCTAACTTTCAACCAAATTTGAGCAAATTTTGCATGATCCCTGTCAAAGATATGAAAATCTTGTCAACTAATAAAATGTTAGTCATAACATCAGAAGTGTTCTGTCAGTTGACGCATTTTCGATATCTTTTACAGAAACTGAAATAATTGAGCTCAAACTGGAGTATGTGGGGCCTTTCTATTACAGGTTTTCCTGTAAGATTCGAAACTTTTGAAAATCGAGATATCCTGAAAGATACTTTTTTCCGCCTTTCTAGTTTTCAAGGTCACATGGAAATTCTTTCTTTGAATATTCGTTTTCTAAGATTGTCATATTTTAGTCGCATAGTGTAAGACCCAGAAGTTCTAATAATTCTTATGGTCTGGGTTATCTACTGGAAAGTTACAAACTGCTGAAATCGCTGCTTCTTGTAGTTTTGCAAATCATACGGTTTCTGGGTGCTTTGGTTCATTTTAAGATTTTAACAAAGTTCTTAAGCTTTCAGAATTCTGAATTCTGGACTAGAAGGTTTAGAATATTGAATTCCTGTATACTGTAAAGCCTGTAATAGCAGGGCCCAGCACTTCTAGACTTGAGCCAATTTTTCTCGGTTCCTGTCTTGACACATTTTTAATACCTTGTATAGGAATTGAGATAATAAAGCTCAAACTTGACAGTGCGAGGGTCCTTCTAT</canonical>
            <polymorphic>ATCAATTGTCCGTCAATGTCGTGTATTAAACAGACACTTGGTTTGGATACGGTAAGACAGACATACAAATTTTATGGGTTCAGAAGAGAGGGAGAAAAGAACCAAATGTTTTGACAACAGAAACCCCCTCACAAAGATTAGTCATGGTTCGCTGGCGTTTTGATGTTGCGCGTGGTATTGTGGTATGGCCAGAGGTAGATGGGACGGGACTGGGGTACCTTTAGCGCGTTTTTGAGCATTTTAGCTCATTTCTGAAAAAATATCTAGACAGACAGGTGTTCGGAATTCGCTTCGAAAATACTATTAAACCTGTAATAGAAGGGCACCCTAACTTTCAACCAAATTTGAGCAAATTTTGCATGATCCCTGTCAAAGATATGAAAATCTTGTCAACTAATAAAATGTTAGTCATAACATCAGAAGTGTTCTGTCAGTTGACGCATTTTCGATATCTTTTACAGAAACTGAAATAATTGAGCTCAAACTGGAGTATGTGGGGYCTTTCTATTACAGGTTTTCCTGTAAGATTCGAAACTTTTGAAAATCGAGATATCCTGAAAGATACTTTTTTCCGCCTTTCTAGTTTTCAAGGTCACATGGAAATTCTTTCTTTGAATATTCGTTTTCTAAGATTGTCATATTTTAGTCGCATAGTGTAAGACCCAGAAGTTCTAATAATTCTTATGGTCTGGGTTATCTACTGGAAAGTTACAAACTGCTGAAATCGCTGCTTCTTGTAGTTTTGCAAATCATACGGTTTCTGGGTGCTTTGGTTCATTTTAAGATTTTAACAAAGTTCTTAAGCTTTCAGAATTCTGAATTCTGGACTAGAAGGTTTAGAATATTGAATTCCTGTATACTGTAAAGCCTGTAATAGCAGGGCCCAGCACTTCTAGACTTGAGCCAATTTTTCTCGGTTCCTGTCTTGACACATTTTTAATACCTTGTATAGGAATTGAGATAATAAAGCTCAAACTTGACAGTGCGAGGGTCCTTCTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>384 216 174 108 73 36 9</canonical_bands>
                <polymorphic_bands>558 216 108 73 36 9</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>383 311 188 118</canonical_bands>
                <polymorphic_bands>694 188 118</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>305 234 188 66 63 56 31 21 21 15</canonical_bands>
                <polymorphic_bands>326 234 188 66 63 56 31 21 15</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>497 383 110 10</canonical_bands>
                <polymorphic_bands>880 110 10</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 383 110 7</canonical_bands>
                <polymorphic_bands>883 110 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATATCTAGACAGACAGGTGTTC</pcr_primer_p1>
		<pcr_primer_p2>GGATATCTCGATTTTCAAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>299</pcr_amplicon_size>
		<canonical_amplicon>AAAATATCTAGACAGACAGGTGTTCGGAATTCGCTTCGAAAATACTATTAAACCTGTAATAGAAGGGCACCCTAACTTTCAACCAAATTTGAGCAAATTTTGCATGATCCCTGTCAAAGATATGAAAATCTTGTCAACTAATAAAATGTTAGTCATAACATCAGAAGTGTTCTGTCAGTTGACGCATTTTCGATATCTTTTACAGAAACTGAAATAATTGAGCTCAAACTGGAGTATGTGGGGCCTTTCTATTACAGGTTTTCCTGTAAGATTCGAAACTTTTGAAAATCGAGATATCC</canonical_amplicon>
		<polymorphic_amplicon>AAAATATCTAGACAGACAGGTGTTCGGAATTCGCTTCGAAAATACTATTAAACCTGTAATAGAAGGGCACCCTAACTTTCAACCAAATTTGAGCAAATTTTGCATGATCCCTGTCAAAGATATGAAAATCTTGTCAACTAATAAAATGTTAGTCATAACATCAGAAGTGTTCTGTCAGTTGACGCATTTTCGATATCTTTTACAGAAACTGAAATAATTGAGCTCAAACTGGAGTATGTGGGGYCTTTCTATTACAGGTTTTCCTGTAAGATTCGAAACTTTTGAAAATCGAGATATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33727</snp_id>
        <super_contig>c008401196.Contig2</super_contig>
        <contig_pos>50545</contig_pos>
        <strand></strand>
        <context>tatgtggggy[C/T]tttctattac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTTTTACAGAAACTGAAATAATTGAGCTCAAACTGGAGTATGTGGGGC</left_flank>
        <right_flank>TTTCTATTACAGGTTTTCCTGTAAGATTCGAAACTTTTGAAAATCGAGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAATTGTCCGTCAATGTCGTGTATTAAACAGACACTTGGTTTGGATACGGTAAGACAGACATACAAATTTTATGGGTTCAGAAGAGAGGGAGAAAAGAACCAAATGTTTTGACAACAGAAACCCCCTCACAAAGATTAGTCATGGTTCGCTGGCGTTTTGATGTTGCGCGTGGTATTGTGGTATGGCCAGAGGTAGATGGGACGGGACTGGGGTACCTTTAGCGCGTTTTTGAGCATTTTAGCTCATTTCTGAAAAAATATCTAGACAGACAGGTGTTCGGAATTCGCTTCGAAAATACTATTAAACCTGTAATAGAAGGGCACCCTAACTTTCAACCAAATTTGAGCAAATTTTGCATGATCCCTGTCAAAGATATGAAAATCTTGTCAACTAATAAAATGTTAGTCATAACATCAGAAGTGTTCTGTCAGTTGACGCATTTTCGATATCTTTTACAGAAACTGAAATAATTGAGCTCAAACTGGAGTATGTGGGGCCTTTCTATTACAGGTTTTCCTGTAAGATTCGAAACTTTTGAAAATCGAGATATCCTGAAAGATACTTTTTTCCGCCTTTCTAGTTTTCAAGGTCACATGGAAATTCTTTCTTTGAATATTCGTTTTCTAAGATTGTCATATTTTAGTCGCATAGTGTAAGACCCAGAAGTTCTAATAATTCTTATGGTCTGGGTTATCTACTGGAAAGTTACAAACTGCTGAAATCGCTGCTTCTTGTAGTTTTGCAAATCATACGGTTTCTGGGTGCTTTGGTTCATTTTAAGATTTTAACAAAGTTCTTAAGCTTTCAGAATTCTGAATTCTGGACTAGAAGGTTTAGAATATTGAATTCCTGTATACTGTAAAGCCTGTAATAGCAGGGCCCAGCACTTCTAGACTTGAGCCAATTTTTCTCGGTTCCTGTCTTGACACATTTTTAATACCTTGTATAGGAATTGAGATAATAAAGCTCAAACTTGACAGTGCGAGGGTCCTTCTATT</canonical>
            <polymorphic>TCAATTGTCCGTCAATGTCGTGTATTAAACAGACACTTGGTTTGGATACGGTAAGACAGACATACAAATTTTATGGGTTCAGAAGAGAGGGAGAAAAGAACCAAATGTTTTGACAACAGAAACCCCCTCACAAAGATTAGTCATGGTTCGCTGGCGTTTTGATGTTGCGCGTGGTATTGTGGTATGGCCAGAGGTAGATGGGACGGGACTGGGGTACCTTTAGCGCGTTTTTGAGCATTTTAGCTCATTTCTGAAAAAATATCTAGACAGACAGGTGTTCGGAATTCGCTTCGAAAATACTATTAAACCTGTAATAGAAGGGCACCCTAACTTTCAACCAAATTTGAGCAAATTTTGCATGATCCCTGTCAAAGATATGAAAATCTTGTCAACTAATAAAATGTTAGTCATAACATCAGAAGTGTTCTGTCAGTTGACGCATTTTCGATATCTTTTACAGAAACTGAAATAATTGAGCTCAAACTGGAGTATGTGGGGCYTTTCTATTACAGGTTTTCCTGTAAGATTCGAAACTTTTGAAAATCGAGATATCCTGAAAGATACTTTTTTCCGCCTTTCTAGTTTTCAAGGTCACATGGAAATTCTTTCTTTGAATATTCGTTTTCTAAGATTGTCATATTTTAGTCGCATAGTGTAAGACCCAGAAGTTCTAATAATTCTTATGGTCTGGGTTATCTACTGGAAAGTTACAAACTGCTGAAATCGCTGCTTCTTGTAGTTTTGCAAATCATACGGTTTCTGGGTGCTTTGGTTCATTTTAAGATTTTAACAAAGTTCTTAAGCTTTCAGAATTCTGAATTCTGGACTAGAAGGTTTAGAATATTGAATTCCTGTATACTGTAAAGCCTGTAATAGCAGGGCCCAGCACTTCTAGACTTGAGCCAATTTTTCTCGGTTCCTGTCTTGACACATTTTTAATACCTTGTATAGGAATTGAGATAATAAAGCTCAAACTTGACAGTGCGAGGGTCCTTCTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>384 215 174 108 73 36 10</canonical_bands>
                <polymorphic_bands>558 215 108 73 36 10</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>383 311 187 119</canonical_bands>
                <polymorphic_bands>694 187 119</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>305 234 187 66 63 56 32 21 21 15</canonical_bands>
                <polymorphic_bands>326 234 187 66 63 56 32 21 15</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>496 383 110 11</canonical_bands>
                <polymorphic_bands>879 110 11</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>499 383 110 8</canonical_bands>
                <polymorphic_bands>882 110 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATATCTAGACAGACAGGTGTTC</pcr_primer_p1>
		<pcr_primer_p2>GGATATCTCGATTTTCAAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>299</pcr_amplicon_size>
		<canonical_amplicon>AAAATATCTAGACAGACAGGTGTTCGGAATTCGCTTCGAAAATACTATTAAACCTGTAATAGAAGGGCACCCTAACTTTCAACCAAATTTGAGCAAATTTTGCATGATCCCTGTCAAAGATATGAAAATCTTGTCAACTAATAAAATGTTAGTCATAACATCAGAAGTGTTCTGTCAGTTGACGCATTTTCGATATCTTTTACAGAAACTGAAATAATTGAGCTCAAACTGGAGTATGTGGGGCCTTTCTATTACAGGTTTTCCTGTAAGATTCGAAACTTTTGAAAATCGAGATATCC</canonical_amplicon>
		<polymorphic_amplicon>AAAATATCTAGACAGACAGGTGTTCGGAATTCGCTTCGAAAATACTATTAAACCTGTAATAGAAGGGCACCCTAACTTTCAACCAAATTTGAGCAAATTTTGCATGATCCCTGTCAAAGATATGAAAATCTTGTCAACTAATAAAATGTTAGTCATAACATCAGAAGTGTTCTGTCAGTTGACGCATTTTCGATATCTTTTACAGAAACTGAAATAATTGAGCTCAAACTGGAGTATGTGGGGCYTTTCTATTACAGGTTTTCCTGTAAGATTCGAAACTTTTGAAAATCGAGATATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33728</snp_id>
        <super_contig>c008401196.Contig2</super_contig>
        <contig_pos>50751</contig_pos>
        <strand>+</strand>
        <context>TCTACTGGAA[A/G]GTTACAAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAGACCCAGAAGTTCTAATAATTCTTATGGTCTGGGTTATCTACTGGAA</left_flank>
        <right_flank>GTTACAAACTGCTGAAATCGCTGCTTCTTGTAGTTTTGCAAATCATACGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTGGGGTACCTTTAGCGCGTTTTTGAGCATTTTAGCTCATTTCTGAAAAAATATCTAGACAGACAGGTGTTCGGAATTCGCTTCGAAAATACTATTAAACCTGTAATAGAAGGGCACCCTAACTTTCAACCAAATTTGAGCAAATTTTGCATGATCCCTGTCAAAGATATGAAAATCTTGTCAACTAATAAAATGTTAGTCATAACATCAGAAGTGTTCTGTCAGTTGACGCATTTTCGATATCTTTTACAGAAACTGAAATAATTGAGCTCAAACTGGAGTATGTGGGGCCTTTCTATTACAGGTTTTCCTGTAAGATTCGAAACTTTTGAAAATCGAGATATCCTGAAAGATACTTTTTTCCGCCTTTCTAGTTTTCAAGGTCACATGGAAATTCTTTCTTTGAATATTCGTTTTCTAAGATTGTCATATTTTAGTCGCATAGTGTAAGACCCAGAAGTTCTAATAATTCTTATGGTCTGGGTTATCTACTGGAAAGTTACAAACTGCTGAAATCGCTGCTTCTTGTAGTTTTGCAAATCATACGGTTTCTGGGTGCTTTGGTTCATTTTAAGATTTTAACAAAGTTCTTAAGCTTTCAGAATTCTGAATTCTGGACTAGAAGGTTTAGAATATTGAATTCCTGTATACTGTAAAGCCTGTAATAGCAGGGCCCAGCACTTCTAGACTTGAGCCAATTTTTCTCGGTTCCTGTCTTGACACATTTTTAATACCTTGTATAGGAATTGAGATAATAAAGCTCAAACTTGACAGTGCGAGGGTCCTTCTATTACAGGTTTCAAAATTACCAGATCTCTTCGGCTTCATTATGAGCTTCATTTCCTAGATTTTCTAAATCCAAAGACTGTACCATTTCCCTAGCCAAACTTTTTCTCTGTCTTATAACTGTTGTCCTTGACTTCACACAACCCTCCAATTTCACAAAAGGAGGTAGATAATTGCCATTCCATCTCTCTCTCCCATTTTTTGTACTCCAC</canonical>
            <polymorphic>GACTGGGGTACCTTTAGCGCGTTTTTGAGCATTTTAGCTCATTTCTGAAAAAATATCTAGACAGACAGGTGTTCGGAATTCGCTTCGAAAATACTATTAAACCTGTAATAGAAGGGCACCCTAACTTTCAACCAAATTTGAGCAAATTTTGCATGATCCCTGTCAAAGATATGAAAATCTTGTCAACTAATAAAATGTTAGTCATAACATCAGAAGTGTTCTGTCAGTTGACGCATTTTCGATATCTTTTACAGAAACTGAAATAATTGAGCTCAAACTGGAGTATGTGGGGCCTTTCTATTACAGGTTTTCCTGTAAGATTCGAAACTTTTGAAAATCGAGATATCCTGAAAGATACTTTTTTCCGCCTTTCTAGTTTTCAAGGTCACATGGAAATTCTTTCTTTGAATATTCGTTTTCTAAGATTGTCATATTTTAGTCGCATAGTGTAAGACCCAGAAGTTCTAATAATTCTTATGGTCTGGGTTATCTACTGGAARGTTACAAACTGCTGAAATCGCTGCTTCTTGTAGTTTTGCAAATCATACGGTTTCTGGGTGCTTTGGTTCATTTTAAGATTTTAACAAAGTTCTTAAGCTTTCAGAATTCTGAATTCTGGACTAGAAGGTTTAGAATATTGAATTCCTGTATACTGTAAAGCCTGTAATAGCAGGGCCCAGCACTTCTAGACTTGAGCCAATTTTTCTCGGTTCCTGTCTTGACACATTTTTAATACCTTGTATAGGAATTGAGATAATAAAGCTCAAACTTGACAGTGCGAGGGTCCTTCTATTACAGGTTTCAAAATTACCAGATCTCTTCGGCTTCATTATGAGCTTCATTTCCTAGATTTTCTAAATCCAAAGACTGTACCATTTCCCTAGCCAAACTTTTTCTCTGTCTTATAACTGTTGTCCTTGACTTCACACAACCCTCCAATTTCACAAAAGGAGGTAGATAATTGCCATTCCATCTCTCTCTCCCATTTTTTGTACTCCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTCTTTGAATATTCGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>AGGAATTCAATATTCTAAACCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTTCTTTGAATATTCGTTTTCTAAGATTGTCATATTTTAGTCGCATAGTGTAAGACCCAGAAGTTCTAATAATTCTTATGGTCTGGGTTATCTACTGGAAAGTTACAAACTGCTGAAATCGCTGCTTCTTGTAGTTTTGCAAATCATACGGTTTCTGGGTGCTTTGGTTCATTTTAAGATTTTAACAAAGTTCTTAAGCTTTCAGAATTCTGAATTCTGGACTAGAAGGTTTAGAATATTGAATTCCT</canonical_amplicon>
		<polymorphic_amplicon>TCTTTCTTTGAATATTCGTTTTCTAAGATTGTCATATTTTAGTCGCATAGTGTAAGACCCAGAAGTTCTAATAATTCTTATGGTCTGGGTTATCTACTGGAARGTTACAAACTGCTGAAATCGCTGCTTCTTGTAGTTTTGCAAATCATACGGTTTCTGGGTGCTTTGGTTCATTTTAAGATTTTAACAAAGTTCTTAAGCTTTCAGAATTCTGAATTCTGGACTAGAAGGTTTAGAATATTGAATTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33729</snp_id>
        <super_contig>c008401196.Contig2</super_contig>
        <contig_pos>62351</contig_pos>
        <strand></strand>
        <context>GAGGCTTTAC[T/A]GTACTCGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CTGGACGGGCCCGCGACATGTATGGTGAGCCCTTCTATTAGAGGCTTTAC</left_flank>
        <right_flank>GTACTCGAAAACTCTATGAAGCTGAAAATCGAGAAATTTAGGAGCCTAGG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAATGAAGAATTGGTGAAAATAGAAAAGAAAGCAATGAAGAAGGTAACAAATAGAACCAATATACCGTAACCACTCTATTAGAAGACCACCCACCCCCGCAAACTTGAGCTCATATATCACGGTTTCTGTGAAATATATCAAAACGCAGTCAACTTTAAAAAATTTTTCAGATATTATGATTAACATTTTATCAGTTGACACATTTTCGATATCTTTCAGAGCAACCGAGATAATTAAGCTCAAACATGGCAGTGTGGGGGCCATACTTCCTGAATTCCGGCTCGGGTTAAAAATGATACGTTTTTCTGTGGATCTTGGATACATTTTTGTCAAAAAGATTATTTTGAAGTTTTGGAGAAATTCAAACCAGGTTTTTACTTAGAGCTGAAAACCAAGAAATTTTGATAAAATATTCACAAAAATCCAAACGTCTTTCAAAAAATTGCTGGACGGGCCCGCGACATGTATGGTGAGCCCTTCTATTAGAGGCTTTACTGTACTCGAAAACTCTATGAAGCTGAAAATCGAGAAATTTAGGAGCCTAGGCATCTAGGGATCTTCAGAAATTGAATTATTGCAACGGCGATGCATGTAAAACTATGTGGACCCACGAAACACAAAGTTCCACATTGTGCAGGTGGGATCTTTGCAATTATCATTAGTCGAGCAATTTAAAAAATATGAAATTCCAAAATTTCCTGTCTATTCTTTTGTTTCTTTGGAATTCAAAATCCAGCTCATCTTCTTGTGCCTCTGTAGTGGTGTATGGTCATCTGACTGGCAATGGACAGCCGTATGTAGGAGAGCAGGTTCAGTTATGGGAGCCAAAGACTTGTGAGTTTGGAAATTTGAAAAAATGTTCACTGATTTCCAAATTTCTAGTGGGCGACGAGTTATGGTATGACATCAATACTGGCAAGGACGGAAAGTTCCGAATGTTCACCAACGGAAATGATTTTGTAAGAAATTCCTTTAATCAACTTCTTGTTTATCTTA</canonical>
            <polymorphic>GAAAAATGAAGAATTGGTGAAAATAGAAAAGAAAGCAATGAAGAAGGTAACAAATAGAACCAATATACCGTAACCACTCTATTAGAAGACCACCCACCCCCGCAAACTTGAGCTCATATATCACGGTTTCTGTGAAATATATCAAAACGCAGTCAACTTTAAAAAATTTTTCAGATATTATGATTAACATTTTATCAGTTGACACATTTTCGATATCTTTCAGAGCAACCGAGATAATTAAGCTCAAACATGGCAGTGTGGGGGCCATACTTCCTGAATTCCGGCTCGGGTTAAAAATGATACGTTTTTCTGTGGATCTTGGATACATTTTTGTCAAAAAGATTATTTTGAAGTTTTGGAGAAATTCAAACCAGGTTTTTACTTAGAGCTGAAAACCAAGAAATTTTGATAAAATATTCACAAAAATCCAAACGTCTTTCAAAAAATTGCTGGACGGGCCCGCGACATGTATGGTGAGCCCTTCTATTAGAGGCTTTACWGTACTCGAAAACTCTATGAAGCTGAAAATCGAGAAATTTAGGAGCCTAGGCATCTAGGGATCTTCAGAAATTGAATTATTGCAACGGCGATGCATGTAAAACTATGTGGACCCACGAAACACAAAGTTCCACATTGTGCAGGTGGGATCTTTGCAATTATCATTAGTCGAGCAATTTAAAAAATATGAAATTCCAAAATTTCCTGTCTATTCTTTTGTTTCTTTGGAATTCAAAATCCAGCTCATCTTCTTGTGCCTCTGTAGTGGTGTATGGTCATCTGACTGGCAATGGACAGCCGTATGTAGGAGAGCAGGTTCAGTTATGGGAGCCAAAGACTTGTGAGTTTGGAAATTTGAAAAAATGTTCACTGATTTCCAAATTTCTAGTGGGCGACGAGTTATGGTATGACATCAATACTGGCAAGGACGGAAAGTTCCGAATGTTCACCAACGGAAATGATTTTGTAAGAAATTCCTTTAATCAACTTCTTGTTTATCTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAGAAGGTAACAAATAGAACC</pcr_primer_p1>
		<pcr_primer_p2>GTGGGTCCACATAGTTTTACAT</pcr_primer_p2>
		<pcr_amplicon_size>577</pcr_amplicon_size>
		<canonical_amplicon>TGAAGAAGGTAACAAATAGAACCAATATACCGTAACCACTCTATTAGAAGACCACCCACCCCCGCAAACTTGAGCTCATATATCACGGTTTCTGTGAAATATATCAAAACGCAGTCAACTTTAAAAAATTTTTCAGATATTATGATTAACATTTTATCAGTTGACACATTTTCGATATCTTTCAGAGCAACCGAGATAATTAAGCTCAAACATGGCAGTGTGGGGGCCATACTTCCTGAATTCCGGCTCGGGTTAAAAATGATACGTTTTTCTGTGGATCTTGGATACATTTTTGTCAAAAAGATTATTTTGAAGTTTTGGAGAAATTCAAACCAGGTTTTTACTTAGAGCTGAAAACCAAGAAATTTTGATAAAATATTCACAAAAATCCAAACGTCTTTCAAAAAATTGCTGGACGGGCCCGCGACATGTATGGTGAGCCCTTCTATTAGAGGCTTTACTGTACTCGAAAACTCTATGAAGCTGAAAATCGAGAAATTTAGGAGCCTAGGCATCTAGGGATCTTCAGAAATTGAATTATTGCAACGGCGATGCATGTAAAACTATGTGGACCCAC</canonical_amplicon>
		<polymorphic_amplicon>TGAAGAAGGTAACAAATAGAACCAATATACCGTAACCACTCTATTAGAAGACCACCCACCCCCGCAAACTTGAGCTCATATATCACGGTTTCTGTGAAATATATCAAAACGCAGTCAACTTTAAAAAATTTTTCAGATATTATGATTAACATTTTATCAGTTGACACATTTTCGATATCTTTCAGAGCAACCGAGATAATTAAGCTCAAACATGGCAGTGTGGGGGCCATACTTCCTGAATTCCGGCTCGGGTTAAAAATGATACGTTTTTCTGTGGATCTTGGATACATTTTTGTCAAAAAGATTATTTTGAAGTTTTGGAGAAATTCAAACCAGGTTTTTACTTAGAGCTGAAAACCAAGAAATTTTGATAAAATATTCACAAAAATCCAAACGTCTTTCAAAAAATTGCTGGACGGGCCCGCGACATGTATGGTGAGCCCTTCTATTAGAGGCTTTACWGTACTCGAAAACTCTATGAAGCTGAAAATCGAGAAATTTAGGAGCCTAGGCATCTAGGGATCTTCAGAAATTGAATTATTGCAACGGCGATGCATGTAAAACTATGTGGACCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33730</snp_id>
        <super_contig>c008401196.Contig2</super_contig>
        <contig_pos>62386</contig_pos>
        <strand></strand>
        <context>AAAATCGAGA[A/G]ATTTAGGWGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTAGAGGCTTTACTGTACTCGAAAACTCTATGAAGCTGAAAATCGAGA</left_flank>
        <right_flank>ATTTAGGAGCCTAGGCATCTAGGGATCTTCAGAAATTGAATTATTGCAAC</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATGAAGAAGGTAACAAATAGAACCAATATACCGTAACCACTCTATTAGAAGACCACCCACCCCCGCAAACTTGAGCTCATATATCACGGTTTCTGTGAAATATATCAAAACGCAGTCAACTTTAAAAAATTTTTCAGATATTATGATTAACATTTTATCAGTTGACACATTTTCGATATCTTTCAGAGCAACCGAGATAATTAAGCTCAAACATGGCAGTGTGGGGGCCATACTTCCTGAATTCCGGCTCGGGTTAAAAATGATACGTTTTTCTGTGGATCTTGGATACATTTTTGTCAAAAAGATTATTTTGAAGTTTTGGAGAAATTCAAACCAGGTTTTTACTTAGAGCTGAAAACCAAGAAATTTTGATAAAATATTCACAAAAATCCAAACGTCTTTCAAAAAATTGCTGGACGGGCCCGCGACATGTATGGTGAGCCCTTCTATTAGAGGCTTTACTGTACTCGAAAACTCTATGAAGCTGAAAATCGAGAAATTTAGGAGCCTAGGCATCTAGGGATCTTCAGAAATTGAATTATTGCAACGGCGATGCATGTAAAACTATGTGGACCCACGAAACACAAAGTTCCACATTGTGCAGGTGGGATCTTTGCAATTATCATTAGTCGAGCAATTTAAAAAATATGAAATTCCAAAATTTCCTGTCTATTCTTTTGTTTCTTTGGAATTCAAAATCCAGCTCATCTTCTTGTGCCTCTGTAGTGGTGTATGGTCATCTGACTGGCAATGGACAGCCGTATGTAGGAGAGCAGGTTCAGTTATGGGAGCCAAAGACTTGTGAGTTTGGAAATTTGAAAAAATGTTCACTGATTTCCAAATTTCTAGTGGGCGACGAGTTATGGTATGACATCAATACTGGCAAGGACGGAAAGTTCCGAATGTTCACCAACGGAAATGATTTTGTAAGAAATTCCTTTAATCAACTTCTTGTTTATCTTATCCAGACCCTTCTCAACATCCCTTCGGCTTTGGAT</canonical>
            <polymorphic>CAATGAAGAAGGTAACAAATAGAACCAATATACCGTAACCACTCTATTAGAAGACCACCCACCCCCGCAAACTTGAGCTCATATATCACGGTTTCTGTGAAATATATCAAAACGCAGTCAACTTTAAAAAATTTTTCAGATATTATGATTAACATTTTATCAGTTGACACATTTTCGATATCTTTCAGAGCAACCGAGATAATTAAGCTCAAACATGGCAGTGTGGGGGCCATACTTCCTGAATTCCGGCTCGGGTTAAAAATGATACGTTTTTCTGTGGATCTTGGATACATTTTTGTCAAAAAGATTATTTTGAAGTTTTGGAGAAATTCAAACCAGGTTTTTACTTAGAGCTGAAAACCAAGAAATTTTGATAAAATATTCACAAAAATCCAAACGTCTTTCAAAAAATTGCTGGACGGGCCCGCGACATGTATGGTGAGCCCTTCTATTAGAGGCTTTACTGTACTCGAAAACTCTATGAAGCTGAAAATCGAGARATTTAGGAGCCTAGGCATCTAGGGATCTTCAGAAATTGAATTATTGCAACGGCGATGCATGTAAAACTATGTGGACCCACGAAACACAAAGTTCCACATTGTGCAGGTGGGATCTTTGCAATTATCATTAGTCGAGCAATTTAAAAAATATGAAATTCCAAAATTTCCTGTCTATTCTTTTGTTTCTTTGGAATTCAAAATCCAGCTCATCTTCTTGTGCCTCTGTAGTGGTGTATGGTCATCTGACTGGCAATGGACAGCCGTATGTAGGAGAGCAGGTTCAGTTATGGGAGCCAAAGACTTGTGAGTTTGGAAATTTGAAAAAATGTTCACTGATTTCCAAATTTCTAGTGGGCGACGAGTTATGGTATGACATCAATACTGGCAAGGACGGAAAGTTCCGAATGTTCACCAACGGAAATGATTTTGTAAGAAATTCCTTTAATCAACTTCTTGTTTATCTTATCCAGACCCTTCTCAACATCCCTTCGGCTTTGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>154 133 129 123 112 92 86 66 39 30 28 8</canonical_bands>
                <polymorphic_bands>287 129 123 112 92 86 66 39 30 28 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>129 123 92 90 86 81 71 66 43 41 39 34 30 28 18 16 8 5</canonical_bands>
                <polymorphic_bands>129 124 123 92 86 81 71 66 43 41 39 30 28 18 16 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCCTTCTATTAGAGGCTTTAC</pcr_primer_p1>
		<pcr_primer_p2>CCAAAGAAACAAAAGAATAGACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCCCTTCTATTAGAGGCTTTACTGTACTCGAAAACTCTATGAAGCTGAAAATCGAGAAATTTAGGAGCCTAGGCATCTAGGGATCTTCAGAAATTGAATTATTGCAACGGCGATGCATGTAAAACTATGTGGACCCACGAAACACAAAGTTCCACATTGTGCAGGTGGGATCTTTGCAATTATCATTAGTCGAGCAATTTAAAAAATATGAAATTCCAAAATTTCCTGTCTATTCTTTTGTTTCTTTGG</canonical_amplicon>
		<polymorphic_amplicon>GCCCTTCTATTAGAGGCTTTACTGTACTCGAAAACTCTATGAAGCTGAAAATCGAGARATTTAGGAGCCTAGGCATCTAGGGATCTTCAGAAATTGAATTATTGCAACGGCGATGCATGTAAAACTATGTGGACCCACGAAACACAAAGTTCCACATTGTGCAGGTGGGATCTTTGCAATTATCATTAGTCGAGCAATTTAAAAAATATGAAATTCCAAAATTTCCTGTCTATTCTTTTGTTTCTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33731</snp_id>
        <super_contig>c008401196.Contig2</super_contig>
        <contig_pos>62394</contig_pos>
        <strand></strand>
        <context>GARATTTAGG[A/T]GCCTAGGCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTTTACTGTACTCGAAAACTCTATGAAGCTGAAAATCGAGAAATTTAGG</left_flank>
        <right_flank>GCCTAGGCATCTAGGGATCTTCAGAAATTGAATTATTGCAACGGCGATGC</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGGTAACAAATAGAACCAATATACCGTAACCACTCTATTAGAAGACCACCCACCCCCGCAAACTTGAGCTCATATATCACGGTTTCTGTGAAATATATCAAAACGCAGTCAACTTTAAAAAATTTTTCAGATATTATGATTAACATTTTATCAGTTGACACATTTTCGATATCTTTCAGAGCAACCGAGATAATTAAGCTCAAACATGGCAGTGTGGGGGCCATACTTCCTGAATTCCGGCTCGGGTTAAAAATGATACGTTTTTCTGTGGATCTTGGATACATTTTTGTCAAAAAGATTATTTTGAAGTTTTGGAGAAATTCAAACCAGGTTTTTACTTAGAGCTGAAAACCAAGAAATTTTGATAAAATATTCACAAAAATCCAAACGTCTTTCAAAAAATTGCTGGACGGGCCCGCGACATGTATGGTGAGCCCTTCTATTAGAGGCTTTACTGTACTCGAAAACTCTATGAAGCTGAAAATCGAGAAATTTAGGAGCCTAGGCATCTAGGGATCTTCAGAAATTGAATTATTGCAACGGCGATGCATGTAAAACTATGTGGACCCACGAAACACAAAGTTCCACATTGTGCAGGTGGGATCTTTGCAATTATCATTAGTCGAGCAATTTAAAAAATATGAAATTCCAAAATTTCCTGTCTATTCTTTTGTTTCTTTGGAATTCAAAATCCAGCTCATCTTCTTGTGCCTCTGTAGTGGTGTATGGTCATCTGACTGGCAATGGACAGCCGTATGTAGGAGAGCAGGTTCAGTTATGGGAGCCAAAGACTTGTGAGTTTGGAAATTTGAAAAAATGTTCACTGATTTCCAAATTTCTAGTGGGCGACGAGTTATGGTATGACATCAATACTGGCAAGGACGGAAAGTTCCGAATGTTCACCAACGGAAATGATTTTGTAAGAAATTCCTTTAATCAACTTCTTGTTTATCTTATCCAGACCCTTCTCAACATCCCTTCGGCTTTGGATTCCAACCG</canonical>
            <polymorphic>AAGGTAACAAATAGAACCAATATACCGTAACCACTCTATTAGAAGACCACCCACCCCCGCAAACTTGAGCTCATATATCACGGTTTCTGTGAAATATATCAAAACGCAGTCAACTTTAAAAAATTTTTCAGATATTATGATTAACATTTTATCAGTTGACACATTTTCGATATCTTTCAGAGCAACCGAGATAATTAAGCTCAAACATGGCAGTGTGGGGGCCATACTTCCTGAATTCCGGCTCGGGTTAAAAATGATACGTTTTTCTGTGGATCTTGGATACATTTTTGTCAAAAAGATTATTTTGAAGTTTTGGAGAAATTCAAACCAGGTTTTTACTTAGAGCTGAAAACCAAGAAATTTTGATAAAATATTCACAAAAATCCAAACGTCTTTCAAAAAATTGCTGGACGGGCCCGCGACATGTATGGTGAGCCCTTCTATTAGAGGCTTTACTGTACTCGAAAACTCTATGAAGCTGAAAATCGAGAAATTTAGGWGCCTAGGCATCTAGGGATCTTCAGAAATTGAATTATTGCAACGGCGATGCATGTAAAACTATGTGGACCCACGAAACACAAAGTTCCACATTGTGCAGGTGGGATCTTTGCAATTATCATTAGTCGAGCAATTTAAAAAATATGAAATTCCAAAATTTCCTGTCTATTCTTTTGTTTCTTTGGAATTCAAAATCCAGCTCATCTTCTTGTGCCTCTGTAGTGGTGTATGGTCATCTGACTGGCAATGGACAGCCGTATGTAGGAGAGCAGGTTCAGTTATGGGAGCCAAAGACTTGTGAGTTTGGAAATTTGAAAAAATGTTCACTGATTTCCAAATTTCTAGTGGGCGACGAGTTATGGTATGACATCAATACTGGCAAGGACGGAAAGTTCCGAATGTTCACCAACGGAAATGATTTTGTAAGAAATTCCTTTAATCAACTTCTTGTTTATCTTATCCAGACCCTTCTCAACATCCCTTCGGCTTTGGATTCCAACCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>199 196 130 104 70 69 55 33 28 23 22 20 20 16 15</canonical_bands>
                <polymorphic_bands>219 199 130 104 70 69 55 33 28 22 20 20 16 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCCTTCTATTAGAGGCTTTAC</pcr_primer_p1>
		<pcr_primer_p2>CCAAAGAAACAAAAGAATAGACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCCCTTCTATTAGAGGCTTTACTGTACTCGAAAACTCTATGAAGCTGAAAATCGAGAAATTTAGGAGCCTAGGCATCTAGGGATCTTCAGAAATTGAATTATTGCAACGGCGATGCATGTAAAACTATGTGGACCCACGAAACACAAAGTTCCACATTGTGCAGGTGGGATCTTTGCAATTATCATTAGTCGAGCAATTTAAAAAATATGAAATTCCAAAATTTCCTGTCTATTCTTTTGTTTCTTTGG</canonical_amplicon>
		<polymorphic_amplicon>GCCCTTCTATTAGAGGCTTTACTGTACTCGAAAACTCTATGAAGCTGAAAATCGAGAAATTTAGGWGCCTAGGCATCTAGGGATCTTCAGAAATTGAATTATTGCAACGGCGATGCATGTAAAACTATGTGGACCCACGAAACACAAAGTTCCACATTGTGCAGGTGGGATCTTTGCAATTATCATTAGTCGAGCAATTTAAAAAATATGAAATTCCAAAATTTCCTGTCTATTCTTTTGTTTCTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33732</snp_id>
        <super_contig>c008401196.Contig2</super_contig>
        <contig_pos>62409</contig_pos>
        <strand></strand>
        <context>AGGCATCTAG[G/A]GATCTTCAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAACTCTATGAAGCTGAAAATCGAGAAATTTAGGAGCCTAGGCATCTAG</left_flank>
        <right_flank>GATCTTCAGAAATTGAATTATTGCAACGGCGATGCATGTAAAACTATGTG</right_flank>
        <qual_score>35</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCAATATACCGTAACCACTCTATTAGAAGACCACCCACCCCCGCAAACTTGAGCTCATATATCACGGTTTCTGTGAAATATATCAAAACGCAGTCAACTTTAAAAAATTTTTCAGATATTATGATTAACATTTTATCAGTTGACACATTTTCGATATCTTTCAGAGCAACCGAGATAATTAAGCTCAAACATGGCAGTGTGGGGGCCATACTTCCTGAATTCCGGCTCGGGTTAAAAATGATACGTTTTTCTGTGGATCTTGGATACATTTTTGTCAAAAAGATTATTTTGAAGTTTTGGAGAAATTCAAACCAGGTTTTTACTTAGAGCTGAAAACCAAGAAATTTTGATAAAATATTCACAAAAATCCAAACGTCTTTCAAAAAATTGCTGGACGGGCCCGCGACATGTATGGTGAGCCCTTCTATTAGAGGCTTTACTGTACTCGAAAACTCTATGAAGCTGAAAATCGAGAAATTTAGGAGCCTAGGCATCTAGGGATCTTCAGAAATTGAATTATTGCAACGGCGATGCATGTAAAACTATGTGGACCCACGAAACACAAAGTTCCACATTGTGCAGGTGGGATCTTTGCAATTATCATTAGTCGAGCAATTTAAAAAATATGAAATTCCAAAATTTCCTGTCTATTCTTTTGTTTCTTTGGAATTCAAAATCCAGCTCATCTTCTTGTGCCTCTGTAGTGGTGTATGGTCATCTGACTGGCAATGGACAGCCGTATGTAGGAGAGCAGGTTCAGTTATGGGAGCCAAAGACTTGTGAGTTTGGAAATTTGAAAAAATGTTCACTGATTTCCAAATTTCTAGTGGGCGACGAGTTATGGTATGACATCAATACTGGCAAGGACGGAAAGTTCCGAATGTTCACCAACGGAAATGATTTTGTAAGAAATTCCTTTAATCAACTTCTTGTTTATCTTATCCAGACCCTTCTCAACATCCCTTCGGCTTTGGATTCCAACCGTACCTTTGGATCCCA</canonical>
            <polymorphic>ACCAATATACCGTAACCACTCTATTAGAAGACCACCCACCCCCGCAAACTTGAGCTCATATATCACGGTTTCTGTGAAATATATCAAAACGCAGTCAACTTTAAAAAATTTTTCAGATATTATGATTAACATTTTATCAGTTGACACATTTTCGATATCTTTCAGAGCAACCGAGATAATTAAGCTCAAACATGGCAGTGTGGGGGCCATACTTCCTGAATTCCGGCTCGGGTTAAAAATGATACGTTTTTCTGTGGATCTTGGATACATTTTTGTCAAAAAGATTATTTTGAAGTTTTGGAGAAATTCAAACCAGGTTTTTACTTAGAGCTGAAAACCAAGAAATTTTGATAAAATATTCACAAAAATCCAAACGTCTTTCAAAAAATTGCTGGACGGGCCCGCGACATGTATGGTGAGCCCTTCTATTAGAGGCTTTACTGTACTCGAAAACTCTATGAAGCTGAAAATCGAGAAATTTAGGAGCCTAGGCATCTAGRGATCTTCAGAAATTGAATTATTGCAACGGCGATGCATGTAAAACTATGTGGACCCACGAAACACAAAGTTCCACATTGTGCAGGTGGGATCTTTGCAATTATCATTAGTCGAGCAATTTAAAAAATATGAAATTCCAAAATTTCCTGTCTATTCTTTTGTTTCTTTGGAATTCAAAATCCAGCTCATCTTCTTGTGCCTCTGTAGTGGTGTATGGTCATCTGACTGGCAATGGACAGCCGTATGTAGGAGAGCAGGTTCAGTTATGGGAGCCAAAGACTTGTGAGTTTGGAAATTTGAAAAAATGTTCACTGATTTCCAAATTTCTAGTGGGCGACGAGTTATGGTATGACATCAATACTGGCAAGGACGGAAAGTTCCGAATGTTCACCAACGGAAATGATTTTGTAAGAAATTCCTTTAATCAACTTCTTGTTTATCTTATCCAGACCCTTCTCAACATCCCTTCGGCTTTGGATTCCAACCGTACCTTTGGATCCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>406 256 244 87 7</canonical_bands>
                <polymorphic_bands>406 331 256 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCCTTCTATTAGAGGCTTTAC</pcr_primer_p1>
		<pcr_primer_p2>CCAAAGAAACAAAAGAATAGACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCCCTTCTATTAGAGGCTTTACTGTACTCGAAAACTCTATGAAGCTGAAAATCGAGAAATTTAGGAGCCTAGGCATCTAGGGATCTTCAGAAATTGAATTATTGCAACGGCGATGCATGTAAAACTATGTGGACCCACGAAACACAAAGTTCCACATTGTGCAGGTGGGATCTTTGCAATTATCATTAGTCGAGCAATTTAAAAAATATGAAATTCCAAAATTTCCTGTCTATTCTTTTGTTTCTTTGG</canonical_amplicon>
		<polymorphic_amplicon>GCCCTTCTATTAGAGGCTTTACTGTACTCGAAAACTCTATGAAGCTGAAAATCGAGAAATTTAGGAGCCTAGGCATCTAGRGATCTTCAGAAATTGAATTATTGCAACGGCGATGCATGTAAAACTATGTGGACCCACGAAACACAAAGTTCCACATTGTGCAGGTGGGATCTTTGCAATTATCATTAGTCGAGCAATTTAAAAAATATGAAATTCCAAAATTTCCTGTCTATTCTTTTGTTTCTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33733</snp_id>
        <super_contig>c008401196.Contig2</super_contig>
        <contig_pos>62425</contig_pos>
        <strand></strand>
        <context>TCAGAAATTG[A/G]RTTATTGCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAATCGAGAAATTTAGGAGCCTAGGCATCTAGGGATCTTCAGAAATTG</left_flank>
        <right_flank>ATTATTGCAACGGCGATGCATGTAAAACTATGTGGACCCACGAAACACAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACTCTATTAGAAGACCACCCACCCCCGCAAACTTGAGCTCATATATCACGGTTTCTGTGAAATATATCAAAACGCAGTCAACTTTAAAAAATTTTTCAGATATTATGATTAACATTTTATCAGTTGACACATTTTCGATATCTTTCAGAGCAACCGAGATAATTAAGCTCAAACATGGCAGTGTGGGGGCCATACTTCCTGAATTCCGGCTCGGGTTAAAAATGATACGTTTTTCTGTGGATCTTGGATACATTTTTGTCAAAAAGATTATTTTGAAGTTTTGGAGAAATTCAAACCAGGTTTTTACTTAGAGCTGAAAACCAAGAAATTTTGATAAAATATTCACAAAAATCCAAACGTCTTTCAAAAAATTGCTGGACGGGCCCGCGACATGTATGGTGAGCCCTTCTATTAGAGGCTTTACTGTACTCGAAAACTCTATGAAGCTGAAAATCGAGAAATTTAGGAGCCTAGGCATCTAGGGATCTTCAGAAATTGAATTATTGCAACGGCGATGCATGTAAAACTATGTGGACCCACGAAACACAAAGTTCCACATTGTGCAGGTGGGATCTTTGCAATTATCATTAGTCGAGCAATTTAAAAAATATGAAATTCCAAAATTTCCTGTCTATTCTTTTGTTTCTTTGGAATTCAAAATCCAGCTCATCTTCTTGTGCCTCTGTAGTGGTGTATGGTCATCTGACTGGCAATGGACAGCCGTATGTAGGAGAGCAGGTTCAGTTATGGGAGCCAAAGACTTGTGAGTTTGGAAATTTGAAAAAATGTTCACTGATTTCCAAATTTCTAGTGGGCGACGAGTTATGGTATGACATCAATACTGGCAAGGACGGAAAGTTCCGAATGTTCACCAACGGAAATGATTTTGTAAGAAATTCCTTTAATCAACTTCTTGTTTATCTTATCCAGACCCTTCTCAACATCCCTTCGGCTTTGGATTCCAACCGTACCTTTGGATCCCAAATTACTGTGGAAGCG</canonical>
            <polymorphic>CACTCTATTAGAAGACCACCCACCCCCGCAAACTTGAGCTCATATATCACGGTTTCTGTGAAATATATCAAAACGCAGTCAACTTTAAAAAATTTTTCAGATATTATGATTAACATTTTATCAGTTGACACATTTTCGATATCTTTCAGAGCAACCGAGATAATTAAGCTCAAACATGGCAGTGTGGGGGCCATACTTCCTGAATTCCGGCTCGGGTTAAAAATGATACGTTTTTCTGTGGATCTTGGATACATTTTTGTCAAAAAGATTATTTTGAAGTTTTGGAGAAATTCAAACCAGGTTTTTACTTAGAGCTGAAAACCAAGAAATTTTGATAAAATATTCACAAAAATCCAAACGTCTTTCAAAAAATTGCTGGACGGGCCCGCGACATGTATGGTGAGCCCTTCTATTAGAGGCTTTACTGTACTCGAAAACTCTATGAAGCTGAAAATCGAGAAATTTAGGAGCCTAGGCATCTAGGGATCTTCAGAAATTGRATTATTGCAACGGCGATGCATGTAAAACTATGTGGACCCACGAAACACAAAGTTCCACATTGTGCAGGTGGGATCTTTGCAATTATCATTAGTCGAGCAATTTAAAAAATATGAAATTCCAAAATTTCCTGTCTATTCTTTTGTTTCTTTGGAATTCAAAATCCAGCTCATCTTCTTGTGCCTCTGTAGTGGTGTATGGTCATCTGACTGGCAATGGACAGCCGTATGTAGGAGAGCAGGTTCAGTTATGGGAGCCAAAGACTTGTGAGTTTGGAAATTTGAAAAAATGTTCACTGATTTCCAAATTTCTAGTGGGCGACGAGTTATGGTATGACATCAATACTGGCAAGGACGGAAAGTTCCGAATGTTCACCAACGGAAATGATTTTGTAAGAAATTCCTTTAATCAACTTCTTGTTTATCTTATCCAGACCCTTCTCAACATCCCTTCGGCTTTGGATTCCAACCGTACCTTTGGATCCCAAATTACTGTGGAAGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>123 92 90 90 89 86 81 71 43 41 39 34 30 28 18 16 16 8 5</canonical_bands>
                <polymorphic_bands>123 92 90 90 89 86 86 71 43 41 39 34 30 28 18 16 16 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCCTTCTATTAGAGGCTTTAC</pcr_primer_p1>
		<pcr_primer_p2>CCAAAGAAACAAAAGAATAGACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCCCTTCTATTAGAGGCTTTACTGTACTCGAAAACTCTATGAAGCTGAAAATCGAGAAATTTAGGAGCCTAGGCATCTAGGGATCTTCAGAAATTGAATTATTGCAACGGCGATGCATGTAAAACTATGTGGACCCACGAAACACAAAGTTCCACATTGTGCAGGTGGGATCTTTGCAATTATCATTAGTCGAGCAATTTAAAAAATATGAAATTCCAAAATTTCCTGTCTATTCTTTTGTTTCTTTGG</canonical_amplicon>
		<polymorphic_amplicon>GCCCTTCTATTAGAGGCTTTACTGTACTCGAAAACTCTATGAAGCTGAAAATCGAGAAATTTAGGAGCCTAGGCATCTAGGGATCTTCAGAAATTGRATTATTGCAACGGCGATGCATGTAAAACTATGTGGACCCACGAAACACAAAGTTCCACATTGTGCAGGTGGGATCTTTGCAATTATCATTAGTCGAGCAATTTAAAAAATATGAAATTCCAAAATTTCCTGTCTATTCTTTTGTTTCTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33734</snp_id>
        <super_contig>c008401196.Contig2</super_contig>
        <contig_pos>62426</contig_pos>
        <strand></strand>
        <context>CAGAAATTGR[A/G]TTATTGCAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATCGAGAAATTTAGGAGCCTAGGCATCTAGGGATCTTCAGAAATTGA</left_flank>
        <right_flank>TTATTGCAACGGCGATGCATGTAAAACTATGTGGACCCACGAAACACAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCTATTAGAAGACCACCCACCCCCGCAAACTTGAGCTCATATATCACGGTTTCTGTGAAATATATCAAAACGCAGTCAACTTTAAAAAATTTTTCAGATATTATGATTAACATTTTATCAGTTGACACATTTTCGATATCTTTCAGAGCAACCGAGATAATTAAGCTCAAACATGGCAGTGTGGGGGCCATACTTCCTGAATTCCGGCTCGGGTTAAAAATGATACGTTTTTCTGTGGATCTTGGATACATTTTTGTCAAAAAGATTATTTTGAAGTTTTGGAGAAATTCAAACCAGGTTTTTACTTAGAGCTGAAAACCAAGAAATTTTGATAAAATATTCACAAAAATCCAAACGTCTTTCAAAAAATTGCTGGACGGGCCCGCGACATGTATGGTGAGCCCTTCTATTAGAGGCTTTACTGTACTCGAAAACTCTATGAAGCTGAAAATCGAGAAATTTAGGAGCCTAGGCATCTAGGGATCTTCAGAAATTGAATTATTGCAACGGCGATGCATGTAAAACTATGTGGACCCACGAAACACAAAGTTCCACATTGTGCAGGTGGGATCTTTGCAATTATCATTAGTCGAGCAATTTAAAAAATATGAAATTCCAAAATTTCCTGTCTATTCTTTTGTTTCTTTGGAATTCAAAATCCAGCTCATCTTCTTGTGCCTCTGTAGTGGTGTATGGTCATCTGACTGGCAATGGACAGCCGTATGTAGGAGAGCAGGTTCAGTTATGGGAGCCAAAGACTTGTGAGTTTGGAAATTTGAAAAAATGTTCACTGATTTCCAAATTTCTAGTGGGCGACGAGTTATGGTATGACATCAATACTGGCAAGGACGGAAAGTTCCGAATGTTCACCAACGGAAATGATTTTGTAAGAAATTCCTTTAATCAACTTCTTGTTTATCTTATCCAGACCCTTCTCAACATCCCTTCGGCTTTGGATTCCAACCGTACCTTTGGATCCCAAATTACTGTGGAAGCGA</canonical>
            <polymorphic>ACTCTATTAGAAGACCACCCACCCCCGCAAACTTGAGCTCATATATCACGGTTTCTGTGAAATATATCAAAACGCAGTCAACTTTAAAAAATTTTTCAGATATTATGATTAACATTTTATCAGTTGACACATTTTCGATATCTTTCAGAGCAACCGAGATAATTAAGCTCAAACATGGCAGTGTGGGGGCCATACTTCCTGAATTCCGGCTCGGGTTAAAAATGATACGTTTTTCTGTGGATCTTGGATACATTTTTGTCAAAAAGATTATTTTGAAGTTTTGGAGAAATTCAAACCAGGTTTTTACTTAGAGCTGAAAACCAAGAAATTTTGATAAAATATTCACAAAAATCCAAACGTCTTTCAAAAAATTGCTGGACGGGCCCGCGACATGTATGGTGAGCCCTTCTATTAGAGGCTTTACTGTACTCGAAAACTCTATGAAGCTGAAAATCGAGAAATTTAGGAGCCTAGGCATCTAGGGATCTTCAGAAATTGARTTATTGCAACGGCGATGCATGTAAAACTATGTGGACCCACGAAACACAAAGTTCCACATTGTGCAGGTGGGATCTTTGCAATTATCATTAGTCGAGCAATTTAAAAAATATGAAATTCCAAAATTTCCTGTCTATTCTTTTGTTTCTTTGGAATTCAAAATCCAGCTCATCTTCTTGTGCCTCTGTAGTGGTGTATGGTCATCTGACTGGCAATGGACAGCCGTATGTAGGAGAGCAGGTTCAGTTATGGGAGCCAAAGACTTGTGAGTTTGGAAATTTGAAAAAATGTTCACTGATTTCCAAATTTCTAGTGGGCGACGAGTTATGGTATGACATCAATACTGGCAAGGACGGAAAGTTCCGAATGTTCACCAACGGAAATGATTTTGTAAGAAATTCCTTTAATCAACTTCTTGTTTATCTTATCCAGACCCTTCTCAACATCCCTTCGGCTTTGGATTCCAACCGTACCTTTGGATCCCAAATTACTGTGGAAGCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>123 92 90 89 89 86 81 71 43 41 39 34 30 28 18 17 16 8 5</canonical_bands>
                <polymorphic_bands>123 92 90 89 89 86 86 71 43 41 39 34 30 28 18 17 16 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCCTTCTATTAGAGGCTTTAC</pcr_primer_p1>
		<pcr_primer_p2>CCAAAGAAACAAAAGAATAGACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCCCTTCTATTAGAGGCTTTACTGTACTCGAAAACTCTATGAAGCTGAAAATCGAGAAATTTAGGAGCCTAGGCATCTAGGGATCTTCAGAAATTGAATTATTGCAACGGCGATGCATGTAAAACTATGTGGACCCACGAAACACAAAGTTCCACATTGTGCAGGTGGGATCTTTGCAATTATCATTAGTCGAGCAATTTAAAAAATATGAAATTCCAAAATTTCCTGTCTATTCTTTTGTTTCTTTGG</canonical_amplicon>
		<polymorphic_amplicon>GCCCTTCTATTAGAGGCTTTACTGTACTCGAAAACTCTATGAAGCTGAAAATCGAGAAATTTAGGAGCCTAGGCATCTAGGGATCTTCAGAAATTGARTTATTGCAACGGCGATGCATGTAAAACTATGTGGACCCACGAAACACAAAGTTCCACATTGTGCAGGTGGGATCTTTGCAATTATCATTAGTCGAGCAATTTAAAAAATATGAAATTCCAAAATTTCCTGTCTATTCTTTTGTTTCTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33735</snp_id>
        <super_contig>c008401196.Contig2</super_contig>
        <contig_pos>62441</contig_pos>
        <strand></strand>
        <context>TGCAACGGCG[A/C]TGCATGTAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGGAGCCTAGGCATCTAGGGATCTTCAGAAATTGAATTATTGCAACGGCG</left_flank>
        <right_flank>TGCATGTAAAACTATGTGGACCCACGAAACACAAAGTTCCACATTGTGCA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACCCACCCCCGCAAACTTGAGCTCATATATCACGGTTTCTGTGAAATATATCAAAACGCAGTCAACTTTAAAAAATTTTTCAGATATTATGATTAACATTTTATCAGTTGACACATTTTCGATATCTTTCAGAGCAACCGAGATAATTAAGCTCAAACATGGCAGTGTGGGGGCCATACTTCCTGAATTCCGGCTCGGGTTAAAAATGATACGTTTTTCTGTGGATCTTGGATACATTTTTGTCAAAAAGATTATTTTGAAGTTTTGGAGAAATTCAAACCAGGTTTTTACTTAGAGCTGAAAACCAAGAAATTTTGATAAAATATTCACAAAAATCCAAACGTCTTTCAAAAAATTGCTGGACGGGCCCGCGACATGTATGGTGAGCCCTTCTATTAGAGGCTTTACTGTACTCGAAAACTCTATGAAGCTGAAAATCGAGAAATTTAGGAGCCTAGGCATCTAGGGATCTTCAGAAATTGAATTATTGCAACGGCGATGCATGTAAAACTATGTGGACCCACGAAACACAAAGTTCCACATTGTGCAGGTGGGATCTTTGCAATTATCATTAGTCGAGCAATTTAAAAAATATGAAATTCCAAAATTTCCTGTCTATTCTTTTGTTTCTTTGGAATTCAAAATCCAGCTCATCTTCTTGTGCCTCTGTAGTGGTGTATGGTCATCTGACTGGCAATGGACAGCCGTATGTAGGAGAGCAGGTTCAGTTATGGGAGCCAAAGACTTGTGAGTTTGGAAATTTGAAAAAATGTTCACTGATTTCCAAATTTCTAGTGGGCGACGAGTTATGGTATGACATCAATACTGGCAAGGACGGAAAGTTCCGAATGTTCACCAACGGAAATGATTTTGTAAGAAATTCCTTTAATCAACTTCTTGTTTATCTTATCCAGACCCTTCTCAACATCCCTTCGGCTTTGGATTCCAACCGTACCTTTGGATCCCAAATTACTGTGGAAGCGAATTAAAAGATGGGAA</canonical>
            <polymorphic>CACCCACCCCCGCAAACTTGAGCTCATATATCACGGTTTCTGTGAAATATATCAAAACGCAGTCAACTTTAAAAAATTTTTCAGATATTATGATTAACATTTTATCAGTTGACACATTTTCGATATCTTTCAGAGCAACCGAGATAATTAAGCTCAAACATGGCAGTGTGGGGGCCATACTTCCTGAATTCCGGCTCGGGTTAAAAATGATACGTTTTTCTGTGGATCTTGGATACATTTTTGTCAAAAAGATTATTTTGAAGTTTTGGAGAAATTCAAACCAGGTTTTTACTTAGAGCTGAAAACCAAGAAATTTTGATAAAATATTCACAAAAATCCAAACGTCTTTCAAAAAATTGCTGGACGGGCCCGCGACATGTATGGTGAGCCCTTCTATTAGAGGCTTTACTGTACTCGAAAACTCTATGAAGCTGAAAATCGAGAAATTTAGGAGCCTAGGCATCTAGGGATCTTCAGAAATTGAATTATTGCAACGGCGMTGCATGTAAAACTATGTGGACCCACGAAACACAAAGTTCCACATTGTGCAGGTGGGATCTTTGCAATTATCATTAGTCGAGCAATTTAAAAAATATGAAATTCCAAAATTTCCTGTCTATTCTTTTGTTTCTTTGGAATTCAAAATCCAGCTCATCTTCTTGTGCCTCTGTAGTGGTGTATGGTCATCTGACTGGCAATGGACAGCCGTATGTAGGAGAGCAGGTTCAGTTATGGGAGCCAAAGACTTGTGAGTTTGGAAATTTGAAAAAATGTTCACTGATTTCCAAATTTCTAGTGGGCGACGAGTTATGGTATGACATCAATACTGGCAAGGACGGAAAGTTCCGAATGTTCACCAACGGAAATGATTTTGTAAGAAATTCCTTTAATCAACTTCTTGTTTATCTTATCCAGACCCTTCTCAACATCCCTTCGGCTTTGGATTCCAACCGTACCTTTGGATCCCAAATTACTGTGGAAGCGAATTAAAAGATGGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATGCAT</site>
                <isoschizomers>
                    <enzyme>BfrBI</enzyme>
                    <enzyme>EcoT22I</enzyme>
                    <enzyme>Mph1103I</enzyme>
                    <enzyme>NsiI</enzyme>
                    <enzyme>Ppu10I</enzyme>
                    <enzyme>Zsp2I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCCTTCTATTAGAGGCTTTAC</pcr_primer_p1>
		<pcr_primer_p2>CCAAAGAAACAAAAGAATAGACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCCCTTCTATTAGAGGCTTTACTGTACTCGAAAACTCTATGAAGCTGAAAATCGAGAAATTTAGGAGCCTAGGCATCTAGGGATCTTCAGAAATTGAATTATTGCAACGGCGATGCATGTAAAACTATGTGGACCCACGAAACACAAAGTTCCACATTGTGCAGGTGGGATCTTTGCAATTATCATTAGTCGAGCAATTTAAAAAATATGAAATTCCAAAATTTCCTGTCTATTCTTTTGTTTCTTTGG</canonical_amplicon>
		<polymorphic_amplicon>GCCCTTCTATTAGAGGCTTTACTGTACTCGAAAACTCTATGAAGCTGAAAATCGAGAAATTTAGGAGCCTAGGCATCTAGGGATCTTCAGAAATTGAATTATTGCAACGGCGMTGCATGTAAAACTATGTGGACCCACGAAACACAAAGTTCCACATTGTGCAGGTGGGATCTTTGCAATTATCATTAGTCGAGCAATTTAAAAAATATGAAATTCCAAAATTTCCTGTCTATTCTTTTGTTTCTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33736</snp_id>
        <super_contig>c008401196.Contig2</super_contig>
        <contig_pos>62514</contig_pos>
        <strand></strand>
        <context>GCAATTATCA[T/C]TAGTCGAGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CACGAAACACAAAGTTCCACATTGTGCAGGTGGGATCTTTGCAATTATCA</left_flank>
        <right_flank>TAGTCGAGCAATTTAAAAAATATGAAATTCCAAAATTTCCTGTCTATTCT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTTTCAGATATTATGATTAACATTTTATCAGTTGACACATTTTCGATATCTTTCAGAGCAACCGAGATAATTAAGCTCAAACATGGCAGTGTGGGGGCCATACTTCCTGAATTCCGGCTCGGGTTAAAAATGATACGTTTTTCTGTGGATCTTGGATACATTTTTGTCAAAAAGATTATTTTGAAGTTTTGGAGAAATTCAAACCAGGTTTTTACTTAGAGCTGAAAACCAAGAAATTTTGATAAAATATTCACAAAAATCCAAACGTCTTTCAAAAAATTGCTGGACGGGCCCGCGACATGTATGGTGAGCCCTTCTATTAGAGGCTTTACTGTACTCGAAAACTCTATGAAGCTGAAAATCGAGAAATTTAGGAGCCTAGGCATCTAGGGATCTTCAGAAATTGAATTATTGCAACGGCGATGCATGTAAAACTATGTGGACCCACGAAACACAAAGTTCCACATTGTGCAGGTGGGATCTTTGCAATTATCATTAGTCGAGCAATTTAAAAAATATGAAATTCCAAAATTTCCTGTCTATTCTTTTGTTTCTTTGGAATTCAAAATCCAGCTCATCTTCTTGTGCCTCTGTAGTGGTGTATGGTCATCTGACTGGCAATGGACAGCCGTATGTAGGAGAGCAGGTTCAGTTATGGGAGCCAAAGACTTGTGAGTTTGGAAATTTGAAAAAATGTTCACTGATTTCCAAATTTCTAGTGGGCGACGAGTTATGGTATGACATCAATACTGGCAAGGACGGAAAGTTCCGAATGTTCACCAACGGAAATGATTTTGTAAGAAATTCCTTTAATCAACTTCTTGTTTATCTTATCCAGACCCTTCTCAACATCCCTTCGGCTTTGGATTCCAACCGTACCTTTGGATCCCAAATTACTGTGGAAGCGAATTAAAAGATGGGAAGAGATGTACTAAGAATATTTTGAAAATCGATATTCCGCAGGGATACATTAGCCCTTGTCAACCAGATGTTCCA</canonical>
            <polymorphic>AAATTTTTCAGATATTATGATTAACATTTTATCAGTTGACACATTTTCGATATCTTTCAGAGCAACCGAGATAATTAAGCTCAAACATGGCAGTGTGGGGGCCATACTTCCTGAATTCCGGCTCGGGTTAAAAATGATACGTTTTTCTGTGGATCTTGGATACATTTTTGTCAAAAAGATTATTTTGAAGTTTTGGAGAAATTCAAACCAGGTTTTTACTTAGAGCTGAAAACCAAGAAATTTTGATAAAATATTCACAAAAATCCAAACGTCTTTCAAAAAATTGCTGGACGGGCCCGCGACATGTATGGTGAGCCCTTCTATTAGAGGCTTTACTGTACTCGAAAACTCTATGAAGCTGAAAATCGAGAAATTTAGGAGCCTAGGCATCTAGGGATCTTCAGAAATTGAATTATTGCAACGGCGATGCATGTAAAACTATGTGGACCCACGAAACACAAAGTTCCACATTGTGCAGGTGGGATCTTTGCAATTATCAYTAGTCGAGCAATTTAAAAAATATGAAATTCCAAAATTTCCTGTCTATTCTTTTGTTTCTTTGGAATTCAAAATCCAGCTCATCTTCTTGTGCCTCTGTAGTGGTGTATGGTCATCTGACTGGCAATGGACAGCCGTATGTAGGAGAGCAGGTTCAGTTATGGGAGCCAAAGACTTGTGAGTTTGGAAATTTGAAAAAATGTTCACTGATTTCCAAATTTCTAGTGGGCGACGAGTTATGGTATGACATCAATACTGGCAAGGACGGAAAGTTCCGAATGTTCACCAACGGAAATGATTTTGTAAGAAATTCCTTTAATCAACTTCTTGTTTATCTTATCCAGACCCTTCTCAACATCCCTTCGGCTTTGGATTCCAACCGTACCTTTGGATCCCAAATTACTGTGGAAGCGAATTAAAAGATGGGAAGAGATGTACTAAGAATATTTTGAAAATCGATATTCCGCAGGGATACATTAGCCCTTGTCAACCAGATGTTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCCTTCTATTAGAGGCTTTAC</pcr_primer_p1>
		<pcr_primer_p2>CCAAAGAAACAAAAGAATAGACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCCCTTCTATTAGAGGCTTTACTGTACTCGAAAACTCTATGAAGCTGAAAATCGAGAAATTTAGGAGCCTAGGCATCTAGGGATCTTCAGAAATTGAATTATTGCAACGGCGATGCATGTAAAACTATGTGGACCCACGAAACACAAAGTTCCACATTGTGCAGGTGGGATCTTTGCAATTATCATTAGTCGAGCAATTTAAAAAATATGAAATTCCAAAATTTCCTGTCTATTCTTTTGTTTCTTTGG</canonical_amplicon>
		<polymorphic_amplicon>GCCCTTCTATTAGAGGCTTTACTGTACTCGAAAACTCTATGAAGCTGAAAATCGAGAAATTTAGGAGCCTAGGCATCTAGGGATCTTCAGAAATTGAATTATTGCAACGGCGATGCATGTAAAACTATGTGGACCCACGAAACACAAAGTTCCACATTGTGCAGGTGGGATCTTTGCAATTATCAYTAGTCGAGCAATTTAAAAAATATGAAATTCCAAAATTTCCTGTCTATTCTTTTGTTTCTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33737</snp_id>
        <super_contig>c008401196.Contig2</super_contig>
        <contig_pos>107252</contig_pos>
        <strand></strand>
        <context>aagcgtcggt[G/T]agcttcgaga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCATAAAATTCTGATTCGGAATGTGTTTTCTGTTCTTGCAAAGCGTCGGT</left_flank>
        <right_flank>AGCTTCGAGAAAATTAGGTCTCAAGAAGTTGTAATGCTAGTTAAACCTGT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTCCTTGCCCCTTTAAAGCCAGAGTCCGAAGATTTTATCTTGATTTATTGCTCACGACCGAAAATCTAGTAAACAAGTTAACCCTTCCATGTGTAAAGGATTTATTGAGATTAACAGAAATTAAAACATACACTAAGAATTGTTAGAAAAGAAAGGAGAAGTGCAGTTCAATAATATTTTCTGATTCTCCAGACGGGAAAAGTCTCCGAAGGCAGGTAATGATAGGTTCAAATTGAACGTTCCCAAATCGATTTGGTTCCTTGAATATCCTTTCCCAACTACTGTGTTCGGGCCAAAATGGACAAGCAGAACCTCTTGAGGGCGCAGGGGTATGGAGAAGATTCGGTATGTGTATGGTGGTTTAGTTATGCTGATGGTGCTGAAAATATAAATCATGGTAATACAGCTCACTAGAGTTACACTTCATGACCTACAAATATTAGAAAGCCCATAAAATTCTGATTCGGAATGTGTTTTCTGTTCTTGCAAAGCGTCGGTGAGCTTCGAGAAAATTAGGTCTCAAGAAGTTGTAATGCTAGTTAAACCTGTTGATTTTGCATTGAAATTCGAGGTTCAACTAGCACTAAAATTTCTTGTGACCTAATTTTTCCAAGCTCACCGCCGTTTCGCGAAAACAAAAAACACCTTCCGAATCAGAATTTTATGGGCTATAATATAGGTGACGTGTAACTTGGGATCCCGCTCAGATAGTTCCATAGCCATCCCTTATAATACTCACTTCAGATGCTCCTCCGATGGGTCAATACGGAAATGTTCCATCACTTTCACATTGAATTCTCTCGACATTTCTTGTTGCGTTAGAATCATGAAGTGCGCATCCGATTTTGCGTGTCGGCTGATGAAGTTCTGAAACCCCTTGCCATTTCAAAAACATCACTTCTAGATGCTAGGTATACCTTCAAATAATCAGTCATAGCTTCTGGATTCAATTCAACAACTTTGATATCCAAACTGTGGCATTGATAGAAGGGACGGAGA</canonical>
            <polymorphic>TGTCCTTGCCCCTTTAAAGCCAGAGTCCGAAGATTTTATCTTGATTTATTGCTCACGACCGAAAATCTAGTAAACAAGTTAACCCTTCCATGTGTAAAGGATTTATTGAGATTAACAGAAATTAAAACATACACTAAGAATTGTTAGAAAAGAAAGGAGAAGTGCAGTTCAATAATATTTTCTGATTCTCCAGACGGGAAAAGTCTCCGAAGGCAGGTAATGATAGGTTCAAATTGAACGTTCCCAAATCGATTTGGTTCCTTGAATATCCTTTCCCAACTACTGTGTTCGGGCCAAAATGGACAAGCAGAACCTCTTGAGGGCGCAGGGGTATGGAGAAGATTCGGTATGTGTATGGTGGTTTAGTTATGCTGATGGTGCTGAAAATATAAATCATGGTAATACAGCTCACTAGAGTTACACTTCATGACCTACAAATATTAGAAAGCCCATAAAATTCTGATTCGGAATGTGTTTTCTGTTCTTGCAAAGCGTCGGTKAGCTTCGAGAAAATTAGGTCTCAAGAAGTTGTAATGCTAGTTAAACCTGTTGATTTTGCATTGAAATTCGAGGTTCAACTAGCACTAAAATTTCTTGTGACCTAATTTTTCCAAGCTCACCGCCGTTTCGCGAAAACAAAAAACACCTTCCGAATCAGAATTTTATGGGCTATAATATAGGTGACGTGTAACTTGGGATCCCGCTCAGATAGTTCCATAGCCATCCCTTATAATACTCACTTCAGATGCTCCTCCGATGGGTCAATACGGAAATGTTCCATCACTTTCACATTGAATTCTCTCGACATTTCTTGTTGCGTTAGAATCATGAAGTGCGCATCCGATTTTGCGTGTCGGCTGATGAAGTTCTGAAACCCCTTGCCATTTCAAAAACATCACTTCTAGATGCTAGGTATACCTTCAAATAATCAGTCATAGCTTCTGGATTCAATTCAACAACTTTGATATCCAAACTGTGGCATTGATAGAAGGGACGGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>123 84 80 66 55 52 51 46 45 44 39 39 38 31 31 26 26 22 20 20 18 15 11 7 6 5</canonical_bands>
                <polymorphic_bands>123 110 80 66 55 52 51 46 45 44 39 39 38 31 31 26 22 20 20 18 15 11 7 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCATGGTAATACAGCTCACTA</pcr_primer_p1>
		<pcr_primer_p2>AGCATCTGAAGTGAGTATTATAAGG</pcr_primer_p2>
		<pcr_amplicon_size>360</pcr_amplicon_size>
		<canonical_amplicon>AAATCATGGTAATACAGCTCACTAGAGTTACACTTCATGACCTACAAATATTAGAAAGCCCATAAAATTCTGATTCGGAATGTGTTTTCTGTTCTTGCAAAGCGTCGGTGAGCTTCGAGAAAATTAGGTCTCAAGAAGTTGTAATGCTAGTTAAACCTGTTGATTTTGCATTGAAATTCGAGGTTCAACTAGCACTAAAATTTCTTGTGACCTAATTTTTCCAAGCTCACCGCCGTTTCGCGAAAACAAAAAACACCTTCCGAATCAGAATTTTATGGGCTATAATATAGGTGACGTGTAACTTGGGATCCCGCTCAGATAGTTCCATAGCCATCCCTTATAATACTCACTTCAGATGCT</canonical_amplicon>
		<polymorphic_amplicon>AAATCATGGTAATACAGCTCACTAGAGTTACACTTCATGACCTACAAATATTAGAAAGCCCATAAAATTCTGATTCGGAATGTGTTTTCTGTTCTTGCAAAGCGTCGGTKAGCTTCGAGAAAATTAGGTCTCAAGAAGTTGTAATGCTAGTTAAACCTGTTGATTTTGCATTGAAATTCGAGGTTCAACTAGCACTAAAATTTCTTGTGACCTAATTTTTCCAAGCTCACCGCCGTTTCGCGAAAACAAAAAACACCTTCCGAATCAGAATTTTATGGGCTATAATATAGGTGACGTGTAACTTGGGATCCCGCTCAGATAGTTCCATAGCCATCCCTTATAATACTCACTTCAGATGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33738</snp_id>
        <super_contig>c008401196.Contig2</super_contig>
        <contig_pos>107319</contig_pos>
        <strand></strand>
        <context>tgcattgaaa[T/A]tcgaggttca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GGTCTCAAGAAGTTGTAATGCTAGTTAAACCTGTTGATTTTGCATTGAAA</left_flank>
        <right_flank>TCGAGGTTCAACTAGCACTAAAATTTCTTGTGACCTAATTTTTCCAAGCT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGTAAACAAGTTAACCCTTCCATGTGTAAAGGATTTATTGAGATTAACAGAAATTAAAACATACACTAAGAATTGTTAGAAAAGAAAGGAGAAGTGCAGTTCAATAATATTTTCTGATTCTCCAGACGGGAAAAGTCTCCGAAGGCAGGTAATGATAGGTTCAAATTGAACGTTCCCAAATCGATTTGGTTCCTTGAATATCCTTTCCCAACTACTGTGTTCGGGCCAAAATGGACAAGCAGAACCTCTTGAGGGCGCAGGGGTATGGAGAAGATTCGGTATGTGTATGGTGGTTTAGTTATGCTGATGGTGCTGAAAATATAAATCATGGTAATACAGCTCACTAGAGTTACACTTCATGACCTACAAATATTAGAAAGCCCATAAAATTCTGATTCGGAATGTGTTTTCTGTTCTTGCAAAGCGTCGGTGAGCTTCGAGAAAATTAGGTCTCAAGAAGTTGTAATGCTAGTTAAACCTGTTGATTTTGCATTGAAATTCGAGGTTCAACTAGCACTAAAATTTCTTGTGACCTAATTTTTCCAAGCTCACCGCCGTTTCGCGAAAACAAAAAACACCTTCCGAATCAGAATTTTATGGGCTATAATATAGGTGACGTGTAACTTGGGATCCCGCTCAGATAGTTCCATAGCCATCCCTTATAATACTCACTTCAGATGCTCCTCCGATGGGTCAATACGGAAATGTTCCATCACTTTCACATTGAATTCTCTCGACATTTCTTGTTGCGTTAGAATCATGAAGTGCGCATCCGATTTTGCGTGTCGGCTGATGAAGTTCTGAAACCCCTTGCCATTTCAAAAACATCACTTCTAGATGCTAGGTATACCTTCAAATAATCAGTCATAGCTTCTGGATTCAATTCAACAACTTTGATATCCAAACTGTGGCATTGATAGAAGGGACGGAGATCCAGGTCAACTGCACTCTTAATTCGAATAGAGCTCATGTGACGCCATTGCTCCATCTCAACCAACT</canonical>
            <polymorphic>TAGTAAACAAGTTAACCCTTCCATGTGTAAAGGATTTATTGAGATTAACAGAAATTAAAACATACACTAAGAATTGTTAGAAAAGAAAGGAGAAGTGCAGTTCAATAATATTTTCTGATTCTCCAGACGGGAAAAGTCTCCGAAGGCAGGTAATGATAGGTTCAAATTGAACGTTCCCAAATCGATTTGGTTCCTTGAATATCCTTTCCCAACTACTGTGTTCGGGCCAAAATGGACAAGCAGAACCTCTTGAGGGCGCAGGGGTATGGAGAAGATTCGGTATGTGTATGGTGGTTTAGTTATGCTGATGGTGCTGAAAATATAAATCATGGTAATACAGCTCACTAGAGTTACACTTCATGACCTACAAATATTAGAAAGCCCATAAAATTCTGATTCGGAATGTGTTTTCTGTTCTTGCAAAGCGTCGGTGAGCTTCGAGAAAATTAGGTCTCAAGAAGTTGTAATGCTAGTTAAACCTGTTGATTTTGCATTGAAAWTCGAGGTTCAACTAGCACTAAAATTTCTTGTGACCTAATTTTTCCAAGCTCACCGCCGTTTCGCGAAAACAAAAAACACCTTCCGAATCAGAATTTTATGGGCTATAATATAGGTGACGTGTAACTTGGGATCCCGCTCAGATAGTTCCATAGCCATCCCTTATAATACTCACTTCAGATGCTCCTCCGATGGGTCAATACGGAAATGTTCCATCACTTTCACATTGAATTCTCTCGACATTTCTTGTTGCGTTAGAATCATGAAGTGCGCATCCGATTTTGCGTGTCGGCTGATGAAGTTCTGAAACCCCTTGCCATTTCAAAAACATCACTTCTAGATGCTAGGTATACCTTCAAATAATCAGTCATAGCTTCTGGATTCAATTCAACAACTTTGATATCCAAACTGTGGCATTGATAGAAGGGACGGAGATCCAGGTCAACTGCACTCTTAATTCGAATAGAGCTCATGTGACGCCATTGCTCCATCTCAACCAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>388 273 136 109 70 24</canonical_bands>
                <polymorphic_bands>388 273 136 133 70</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>224 155 136 93 71 56 55 53 52 47 24 19 15</canonical_bands>
                <polymorphic_bands>224 155 136 93 77 71 56 55 52 47 19 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCATGGTAATACAGCTCACTA</pcr_primer_p1>
		<pcr_primer_p2>AGCATCTGAAGTGAGTATTATAAGG</pcr_primer_p2>
		<pcr_amplicon_size>360</pcr_amplicon_size>
		<canonical_amplicon>AAATCATGGTAATACAGCTCACTAGAGTTACACTTCATGACCTACAAATATTAGAAAGCCCATAAAATTCTGATTCGGAATGTGTTTTCTGTTCTTGCAAAGCGTCGGTGAGCTTCGAGAAAATTAGGTCTCAAGAAGTTGTAATGCTAGTTAAACCTGTTGATTTTGCATTGAAATTCGAGGTTCAACTAGCACTAAAATTTCTTGTGACCTAATTTTTCCAAGCTCACCGCCGTTTCGCGAAAACAAAAAACACCTTCCGAATCAGAATTTTATGGGCTATAATATAGGTGACGTGTAACTTGGGATCCCGCTCAGATAGTTCCATAGCCATCCCTTATAATACTCACTTCAGATGCT</canonical_amplicon>
		<polymorphic_amplicon>AAATCATGGTAATACAGCTCACTAGAGTTACACTTCATGACCTACAAATATTAGAAAGCCCATAAAATTCTGATTCGGAATGTGTTTTCTGTTCTTGCAAAGCGTCGGTGAGCTTCGAGAAAATTAGGTCTCAAGAAGTTGTAATGCTAGTTAAACCTGTTGATTTTGCATTGAAAWTCGAGGTTCAACTAGCACTAAAATTTCTTGTGACCTAATTTTTCCAAGCTCACCGCCGTTTCGCGAAAACAAAAAACACCTTCCGAATCAGAATTTTATGGGCTATAATATAGGTGACGTGTAACTTGGGATCCCGCTCAGATAGTTCCATAGCCATCCCTTATAATACTCACTTCAGATGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33739</snp_id>
        <super_contig>c008401196.Contig2</super_contig>
        <contig_pos>107349</contig_pos>
        <strand></strand>
        <context>aaaatttctt[G/T]tgasctaatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTGTTGATTTTGCATTGAAATTCGAGGTTCAACTAGCACTAAAATTTCTT</left_flank>
        <right_flank>TGACCTAATTTTTCCAAGCTCACCGCCGTTTCGCGAAAACAAAAAACACC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGATTTATTGAGATTAACAGAAATTAAAACATACACTAAGAATTGTTAGAAAAGAAAGGAGAAGTGCAGTTCAATAATATTTTCTGATTCTCCAGACGGGAAAAGTCTCCGAAGGCAGGTAATGATAGGTTCAAATTGAACGTTCCCAAATCGATTTGGTTCCTTGAATATCCTTTCCCAACTACTGTGTTCGGGCCAAAATGGACAAGCAGAACCTCTTGAGGGCGCAGGGGTATGGAGAAGATTCGGTATGTGTATGGTGGTTTAGTTATGCTGATGGTGCTGAAAATATAAATCATGGTAATACAGCTCACTAGAGTTACACTTCATGACCTACAAATATTAGAAAGCCCATAAAATTCTGATTCGGAATGTGTTTTCTGTTCTTGCAAAGCGTCGGTGAGCTTCGAGAAAATTAGGTCTCAAGAAGTTGTAATGCTAGTTAAACCTGTTGATTTTGCATTGAAATTCGAGGTTCAACTAGCACTAAAATTTCTTGTGACCTAATTTTTCCAAGCTCACCGCCGTTTCGCGAAAACAAAAAACACCTTCCGAATCAGAATTTTATGGGCTATAATATAGGTGACGTGTAACTTGGGATCCCGCTCAGATAGTTCCATAGCCATCCCTTATAATACTCACTTCAGATGCTCCTCCGATGGGTCAATACGGAAATGTTCCATCACTTTCACATTGAATTCTCTCGACATTTCTTGTTGCGTTAGAATCATGAAGTGCGCATCCGATTTTGCGTGTCGGCTGATGAAGTTCTGAAACCCCTTGCCATTTCAAAAACATCACTTCTAGATGCTAGGTATACCTTCAAATAATCAGTCATAGCTTCTGGATTCAATTCAACAACTTTGATATCCAAACTGTGGCATTGATAGAAGGGACGGAGATCCAGGTCAACTGCACTCTTAATTCGAATAGAGCTCATGTGACGCCATTGCTCCATCTCAACCAACTTCTCAACGACTTGCGTGCTGATGTGGTTTC</canonical>
            <polymorphic>AGGATTTATTGAGATTAACAGAAATTAAAACATACACTAAGAATTGTTAGAAAAGAAAGGAGAAGTGCAGTTCAATAATATTTTCTGATTCTCCAGACGGGAAAAGTCTCCGAAGGCAGGTAATGATAGGTTCAAATTGAACGTTCCCAAATCGATTTGGTTCCTTGAATATCCTTTCCCAACTACTGTGTTCGGGCCAAAATGGACAAGCAGAACCTCTTGAGGGCGCAGGGGTATGGAGAAGATTCGGTATGTGTATGGTGGTTTAGTTATGCTGATGGTGCTGAAAATATAAATCATGGTAATACAGCTCACTAGAGTTACACTTCATGACCTACAAATATTAGAAAGCCCATAAAATTCTGATTCGGAATGTGTTTTCTGTTCTTGCAAAGCGTCGGTGAGCTTCGAGAAAATTAGGTCTCAAGAAGTTGTAATGCTAGTTAAACCTGTTGATTTTGCATTGAAATTCGAGGTTCAACTAGCACTAAAATTTCTTKTGACCTAATTTTTCCAAGCTCACCGCCGTTTCGCGAAAACAAAAAACACCTTCCGAATCAGAATTTTATGGGCTATAATATAGGTGACGTGTAACTTGGGATCCCGCTCAGATAGTTCCATAGCCATCCCTTATAATACTCACTTCAGATGCTCCTCCGATGGGTCAATACGGAAATGTTCCATCACTTTCACATTGAATTCTCTCGACATTTCTTGTTGCGTTAGAATCATGAAGTGCGCATCCGATTTTGCGTGTCGGCTGATGAAGTTCTGAAACCCCTTGCCATTTCAAAAACATCACTTCTAGATGCTAGGTATACCTTCAAATAATCAGTCATAGCTTCTGGATTCAATTCAACAACTTTGATATCCAAACTGTGGCATTGATAGAAGGGACGGAGATCCAGGTCAACTGCACTCTTAATTCGAATAGAGCTCATGTGACGCCATTGCTCCATCTCAACCAACTTCTCAACGACTTGCGTGCTGATGTGGTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>123 84 80 66 52 51 46 45 44 43 38 37 36 31 31 26 26 26 20 20 18 15 11 8 7 6 5 5</canonical_bands>
                <polymorphic_bands>123 84 80 66 52 51 46 45 44 43 38 37 36 35 31 31 26 26 26 20 18 11 8 7 6 5 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>351 319 180 84 59 7</canonical_bands>
                <polymorphic_bands>351 319 264 59 7</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>499 358 84 59</canonical_bands>
                <polymorphic_bands>583 358 59</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCATGGTAATACAGCTCACTA</pcr_primer_p1>
		<pcr_primer_p2>AGCATCTGAAGTGAGTATTATAAGG</pcr_primer_p2>
		<pcr_amplicon_size>360</pcr_amplicon_size>
		<canonical_amplicon>AAATCATGGTAATACAGCTCACTAGAGTTACACTTCATGACCTACAAATATTAGAAAGCCCATAAAATTCTGATTCGGAATGTGTTTTCTGTTCTTGCAAAGCGTCGGTGAGCTTCGAGAAAATTAGGTCTCAAGAAGTTGTAATGCTAGTTAAACCTGTTGATTTTGCATTGAAATTCGAGGTTCAACTAGCACTAAAATTTCTTGTGACCTAATTTTTCCAAGCTCACCGCCGTTTCGCGAAAACAAAAAACACCTTCCGAATCAGAATTTTATGGGCTATAATATAGGTGACGTGTAACTTGGGATCCCGCTCAGATAGTTCCATAGCCATCCCTTATAATACTCACTTCAGATGCT</canonical_amplicon>
		<polymorphic_amplicon>AAATCATGGTAATACAGCTCACTAGAGTTACACTTCATGACCTACAAATATTAGAAAGCCCATAAAATTCTGATTCGGAATGTGTTTTCTGTTCTTGCAAAGCGTCGGTGAGCTTCGAGAAAATTAGGTCTCAAGAAGTTGTAATGCTAGTTAAACCTGTTGATTTTGCATTGAAATTCGAGGTTCAACTAGCACTAAAATTTCTTKTGACCTAATTTTTCCAAGCTCACCGCCGTTTCGCGAAAACAAAAAACACCTTCCGAATCAGAATTTTATGGGCTATAATATAGGTGACGTGTAACTTGGGATCCCGCTCAGATAGTTCCATAGCCATCCCTTATAATACTCACTTCAGATGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33740</snp_id>
        <super_contig>c008401196.Contig2</super_contig>
        <contig_pos>107353</contig_pos>
        <strand></strand>
        <context>tttcttktga[C/G]ctaatttttc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGATTTTGCATTGAAATTCGAGGTTCAACTAGCACTAAAATTTCTTGTGA</left_flank>
        <right_flank>CTAATTTTTCCAAGCTCACCGCCGTTTCGCGAAAACAAAAAACACCTTCC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTATTGAGATTAACAGAAATTAAAACATACACTAAGAATTGTTAGAAAAGAAAGGAGAAGTGCAGTTCAATAATATTTTCTGATTCTCCAGACGGGAAAAGTCTCCGAAGGCAGGTAATGATAGGTTCAAATTGAACGTTCCCAAATCGATTTGGTTCCTTGAATATCCTTTCCCAACTACTGTGTTCGGGCCAAAATGGACAAGCAGAACCTCTTGAGGGCGCAGGGGTATGGAGAAGATTCGGTATGTGTATGGTGGTTTAGTTATGCTGATGGTGCTGAAAATATAAATCATGGTAATACAGCTCACTAGAGTTACACTTCATGACCTACAAATATTAGAAAGCCCATAAAATTCTGATTCGGAATGTGTTTTCTGTTCTTGCAAAGCGTCGGTGAGCTTCGAGAAAATTAGGTCTCAAGAAGTTGTAATGCTAGTTAAACCTGTTGATTTTGCATTGAAATTCGAGGTTCAACTAGCACTAAAATTTCTTGTGACCTAATTTTTCCAAGCTCACCGCCGTTTCGCGAAAACAAAAAACACCTTCCGAATCAGAATTTTATGGGCTATAATATAGGTGACGTGTAACTTGGGATCCCGCTCAGATAGTTCCATAGCCATCCCTTATAATACTCACTTCAGATGCTCCTCCGATGGGTCAATACGGAAATGTTCCATCACTTTCACATTGAATTCTCTCGACATTTCTTGTTGCGTTAGAATCATGAAGTGCGCATCCGATTTTGCGTGTCGGCTGATGAAGTTCTGAAACCCCTTGCCATTTCAAAAACATCACTTCTAGATGCTAGGTATACCTTCAAATAATCAGTCATAGCTTCTGGATTCAATTCAACAACTTTGATATCCAAACTGTGGCATTGATAGAAGGGACGGAGATCCAGGTCAACTGCACTCTTAATTCGAATAGAGCTCATGTGACGCCATTGCTCCATCTCAACCAACTTCTCAACGACTTGCGTGCTGATGTGGTTTCCATA</canonical>
            <polymorphic>TTTATTGAGATTAACAGAAATTAAAACATACACTAAGAATTGTTAGAAAAGAAAGGAGAAGTGCAGTTCAATAATATTTTCTGATTCTCCAGACGGGAAAAGTCTCCGAAGGCAGGTAATGATAGGTTCAAATTGAACGTTCCCAAATCGATTTGGTTCCTTGAATATCCTTTCCCAACTACTGTGTTCGGGCCAAAATGGACAAGCAGAACCTCTTGAGGGCGCAGGGGTATGGAGAAGATTCGGTATGTGTATGGTGGTTTAGTTATGCTGATGGTGCTGAAAATATAAATCATGGTAATACAGCTCACTAGAGTTACACTTCATGACCTACAAATATTAGAAAGCCCATAAAATTCTGATTCGGAATGTGTTTTCTGTTCTTGCAAAGCGTCGGTGAGCTTCGAGAAAATTAGGTCTCAAGAAGTTGTAATGCTAGTTAAACCTGTTGATTTTGCATTGAAATTCGAGGTTCAACTAGCACTAAAATTTCTTGTGASCTAATTTTTCCAAGCTCACCGCCGTTTCGCGAAAACAAAAAACACCTTCCGAATCAGAATTTTATGGGCTATAATATAGGTGACGTGTAACTTGGGATCCCGCTCAGATAGTTCCATAGCCATCCCTTATAATACTCACTTCAGATGCTCCTCCGATGGGTCAATACGGAAATGTTCCATCACTTTCACATTGAATTCTCTCGACATTTCTTGTTGCGTTAGAATCATGAAGTGCGCATCCGATTTTGCGTGTCGGCTGATGAAGTTCTGAAACCCCTTGCCATTTCAAAAACATCACTTCTAGATGCTAGGTATACCTTCAAATAATCAGTCATAGCTTCTGGATTCAATTCAACAACTTTGATATCCAAACTGTGGCATTGATAGAAGGGACGGAGATCCAGGTCAACTGCACTCTTAATTCGAATAGAGCTCATGTGACGCCATTGCTCCATCTCAACCAACTTCTCAACGACTTGCGTGCTGATGTGGTTTCCATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>351 315 180 84 63 7</canonical_bands>
                <polymorphic_bands>351 315 264 63 7</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>495 358 84 63</canonical_bands>
                <polymorphic_bands>579 358 63</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCATGGTAATACAGCTCACTA</pcr_primer_p1>
		<pcr_primer_p2>AGCATCTGAAGTGAGTATTATAAGG</pcr_primer_p2>
		<pcr_amplicon_size>360</pcr_amplicon_size>
		<canonical_amplicon>AAATCATGGTAATACAGCTCACTAGAGTTACACTTCATGACCTACAAATATTAGAAAGCCCATAAAATTCTGATTCGGAATGTGTTTTCTGTTCTTGCAAAGCGTCGGTGAGCTTCGAGAAAATTAGGTCTCAAGAAGTTGTAATGCTAGTTAAACCTGTTGATTTTGCATTGAAATTCGAGGTTCAACTAGCACTAAAATTTCTTGTGACCTAATTTTTCCAAGCTCACCGCCGTTTCGCGAAAACAAAAAACACCTTCCGAATCAGAATTTTATGGGCTATAATATAGGTGACGTGTAACTTGGGATCCCGCTCAGATAGTTCCATAGCCATCCCTTATAATACTCACTTCAGATGCT</canonical_amplicon>
		<polymorphic_amplicon>AAATCATGGTAATACAGCTCACTAGAGTTACACTTCATGACCTACAAATATTAGAAAGCCCATAAAATTCTGATTCGGAATGTGTTTTCTGTTCTTGCAAAGCGTCGGTGAGCTTCGAGAAAATTAGGTCTCAAGAAGTTGTAATGCTAGTTAAACCTGTTGATTTTGCATTGAAATTCGAGGTTCAACTAGCACTAAAATTTCTTGTGASCTAATTTTTCCAAGCTCACCGCCGTTTCGCGAAAACAAAAAACACCTTCCGAATCAGAATTTTATGGGCTATAATATAGGTGACGTGTAACTTGGGATCCCGCTCAGATAGTTCCATAGCCATCCCTTATAATACTCACTTCAGATGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33741</snp_id>
        <super_contig>c008401196.Contig2</super_contig>
        <contig_pos>107469</contig_pos>
        <strand></strand>
        <context>agatagttcc[A/C]taGCCATCCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGGCTATAATATAGGTGACGTGTAACTTGGGATCCCGCTCAGATAGTTCC</left_flank>
        <right_flank>TAGCCATCCCTTATAATACTCACTTCAGATGCTCCTCCGATGGGTCAATA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATGATAGGTTCAAATTGAACGTTCCCAAATCGATTTGGTTCCTTGAATATCCTTTCCCAACTACTGTGTTCGGGCCAAAATGGACAAGCAGAACCTCTTGAGGGCGCAGGGGTATGGAGAAGATTCGGTATGTGTATGGTGGTTTAGTTATGCTGATGGTGCTGAAAATATAAATCATGGTAATACAGCTCACTAGAGTTACACTTCATGACCTACAAATATTAGAAAGCCCATAAAATTCTGATTCGGAATGTGTTTTCTGTTCTTGCAAAGCGTCGGTGAGCTTCGAGAAAATTAGGTCTCAAGAAGTTGTAATGCTAGTTAAACCTGTTGATTTTGCATTGAAATTCGAGGTTCAACTAGCACTAAAATTTCTTGTGACCTAATTTTTCCAAGCTCACCGCCGTTTCGCGAAAACAAAAAACACCTTCCGAATCAGAATTTTATGGGCTATAATATAGGTGACGTGTAACTTGGGATCCCGCTCAGATAGTTCCATAGCCATCCCTTATAATACTCACTTCAGATGCTCCTCCGATGGGTCAATACGGAAATGTTCCATCACTTTCACATTGAATTCTCTCGACATTTCTTGTTGCGTTAGAATCATGAAGTGCGCATCCGATTTTGCGTGTCGGCTGATGAAGTTCTGAAACCCCTTGCCATTTCAAAAACATCACTTCTAGATGCTAGGTATACCTTCAAATAATCAGTCATAGCTTCTGGATTCAATTCAACAACTTTGATATCCAAACTGTGGCATTGATAGAAGGGACGGAGATCCAGGTCAACTGCACTCTTAATTCGAATAGAGCTCATGTGACGCCATTGCTCCATCTCAACCAACTTCTCAACGACTTGCGTGCTGATGTGGTTTCCATAAAGATGTAAAGTATCCAAAAAAGAGGCATCTACTTGTCCCAAAATTTCAAGAAAACTTTCGTTTTCTATTGGACCATCCCATTTGAAATATTGTACTTTCCAAGGTGCAGAAACGC</canonical>
            <polymorphic>TAATGATAGGTTCAAATTGAACGTTCCCAAATCGATTTGGTTCCTTGAATATCCTTTCCCAACTACTGTGTTCGGGCCAAAATGGACAAGCAGAACCTCTTGAGGGCGCAGGGGTATGGAGAAGATTCGGTATGTGTATGGTGGTTTAGTTATGCTGATGGTGCTGAAAATATAAATCATGGTAATACAGCTCACTAGAGTTACACTTCATGACCTACAAATATTAGAAAGCCCATAAAATTCTGATTCGGAATGTGTTTTCTGTTCTTGCAAAGCGTCGGTGAGCTTCGAGAAAATTAGGTCTCAAGAAGTTGTAATGCTAGTTAAACCTGTTGATTTTGCATTGAAATTCGAGGTTCAACTAGCACTAAAATTTCTTGTGACCTAATTTTTCCAAGCTCACCGCCGTTTCGCGAAAACAAAAAACACCTTCCGAATCAGAATTTTATGGGCTATAATATAGGTGACGTGTAACTTGGGATCCCGCTCAGATAGTTCCMTAGCCATCCCTTATAATACTCACTTCAGATGCTCCTCCGATGGGTCAATACGGAAATGTTCCATCACTTTCACATTGAATTCTCTCGACATTTCTTGTTGCGTTAGAATCATGAAGTGCGCATCCGATTTTGCGTGTCGGCTGATGAAGTTCTGAAACCCCTTGCCATTTCAAAAACATCACTTCTAGATGCTAGGTATACCTTCAAATAATCAGTCATAGCTTCTGGATTCAATTCAACAACTTTGATATCCAAACTGTGGCATTGATAGAAGGGACGGAGATCCAGGTCAACTGCACTCTTAATTCGAATAGAGCTCATGTGACGCCATTGCTCCATCTCAACCAACTTCTCAACGACTTGCGTGCTGATGTGGTTTCCATAAAGATGTAAAGTATCCAAAAAAGAGGCATCTACTTGTCCCAAAATTTCAAGAAAACTTTCGTTTTCTATTGGACCATCCCATTTGAAATATTGTACTTTCCAAGGTGCAGAAACGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCATGGTAATACAGCTCACT</pcr_primer_p1>
		<pcr_primer_p2>TGGAACATTTCCGTATTGAC</pcr_primer_p2>
		<pcr_amplicon_size>390</pcr_amplicon_size>
		<canonical_amplicon>AAATCATGGTAATACAGCTCACTAGAGTTACACTTCATGACCTACAAATATTAGAAAGCCCATAAAATTCTGATTCGGAATGTGTTTTCTGTTCTTGCAAAGCGTCGGTGAGCTTCGAGAAAATTAGGTCTCAAGAAGTTGTAATGCTAGTTAAACCTGTTGATTTTGCATTGAAATTCGAGGTTCAACTAGCACTAAAATTTCTTGTGACCTAATTTTTCCAAGCTCACCGCCGTTTCGCGAAAACAAAAAACACCTTCCGAATCAGAATTTTATGGGCTATAATATAGGTGACGTGTAACTTGGGATCCCGCTCAGATAGTTCCATAGCCATCCCTTATAATACTCACTTCAGATGCTCCTCCGATGGGTCAATACGGAAATGTTCCA</canonical_amplicon>
		<polymorphic_amplicon>AAATCATGGTAATACAGCTCACTAGAGTTACACTTCATGACCTACAAATATTAGAAAGCCCATAAAATTCTGATTCGGAATGTGTTTTCTGTTCTTGCAAAGCGTCGGTGAGCTTCGAGAAAATTAGGTCTCAAGAAGTTGTAATGCTAGTTAAACCTGTTGATTTTGCATTGAAATTCGAGGTTCAACTAGCACTAAAATTTCTTGTGACCTAATTTTTCCAAGCTCACCGCCGTTTCGCGAAAACAAAAAACACCTTCCGAATCAGAATTTTATGGGCTATAATATAGGTGACGTGTAACTTGGGATCCCGCTCAGATAGTTCCMTAGCCATCCCTTATAATACTCACTTCAGATGCTCCTCCGATGGGTCAATACGGAAATGTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33742</snp_id>
        <super_contig>c008401196.Contig2</super_contig>
        <contig_pos>107557</contig_pos>
        <strand>+</strand>
        <context>AATTCTCTCG[A/G]CATTTCTTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGATGGGTCAATACGGAAATGTTCCATCACTTTCACATTGAATTCTCTCG</left_flank>
        <right_flank>CATTTCTTGTTGCGTTAGAATCATGAAGTGCGCATCCGATTTTGCGTGTC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCAGAACCTCTTGAGGGCGCAGGGGTATGGAGAAGATTCGGTATGTGTATGGTGGTTTAGTTATGCTGATGGTGCTGAAAATATAAATCATGGTAATACAGCTCACTAGAGTTACACTTCATGACCTACAAATATTAGAAAGCCCATAAAATTCTGATTCGGAATGTGTTTTCTGTTCTTGCAAAGCGTCGGTGAGCTTCGAGAAAATTAGGTCTCAAGAAGTTGTAATGCTAGTTAAACCTGTTGATTTTGCATTGAAATTCGAGGTTCAACTAGCACTAAAATTTCTTGTGACCTAATTTTTCCAAGCTCACCGCCGTTTCGCGAAAACAAAAAACACCTTCCGAATCAGAATTTTATGGGCTATAATATAGGTGACGTGTAACTTGGGATCCCGCTCAGATAGTTCCATAGCCATCCCTTATAATACTCACTTCAGATGCTCCTCCGATGGGTCAATACGGAAATGTTCCATCACTTTCACATTGAATTCTCTCGACATTTCTTGTTGCGTTAGAATCATGAAGTGCGCATCCGATTTTGCGTGTCGGCTGATGAAGTTCTGAAACCCCTTGCCATTTCAAAAACATCACTTCTAGATGCTAGGTATACCTTCAAATAATCAGTCATAGCTTCTGGATTCAATTCAACAACTTTGATATCCAAACTGTGGCATTGATAGAAGGGACGGAGATCCAGGTCAACTGCACTCTTAATTCGAATAGAGCTCATGTGACGCCATTGCTCCATCTCAACCAACTTCTCAACGACTTGCGTGCTGATGTGGTTTCCATAAAGATGTAAAGTATCCAAAAAAGAGGCATCTACTTGTCCCAAAATTTCAAGAAAACTTTCGTTTTCTATTGGACCATCCCATTTGAAATATTGTACTTTCCAAGGTGCAGAAACGCCTTCTCGCTTTCGTTGATCGATCACCTCCACTATCTTGTTTCCCAGCTCTTTTATTCCCAATGGATATTCCTCACATCCAAGGATCAA</canonical>
            <polymorphic>AGCAGAACCTCTTGAGGGCGCAGGGGTATGGAGAAGATTCGGTATGTGTATGGTGGTTTAGTTATGCTGATGGTGCTGAAAATATAAATCATGGTAATACAGCTCACTAGAGTTACACTTCATGACCTACAAATATTAGAAAGCCCATAAAATTCTGATTCGGAATGTGTTTTCTGTTCTTGCAAAGCGTCGGTGAGCTTCGAGAAAATTAGGTCTCAAGAAGTTGTAATGCTAGTTAAACCTGTTGATTTTGCATTGAAATTCGAGGTTCAACTAGCACTAAAATTTCTTGTGACCTAATTTTTCCAAGCTCACCGCCGTTTCGCGAAAACAAAAAACACCTTCCGAATCAGAATTTTATGGGCTATAATATAGGTGACGTGTAACTTGGGATCCCGCTCAGATAGTTCCATAGCCATCCCTTATAATACTCACTTCAGATGCTCCTCCGATGGGTCAATACGGAAATGTTCCATCACTTTCACATTGAATTCTCTCGRCATTTCTTGTTGCGTTAGAATCATGAAGTGCGCATCCGATTTTGCGTGTCGGCTGATGAAGTTCTGAAACCCCTTGCCATTTCAAAAACATCACTTCTAGATGCTAGGTATACCTTCAAATAATCAGTCATAGCTTCTGGATTCAATTCAACAACTTTGATATCCAAACTGTGGCATTGATAGAAGGGACGGAGATCCAGGTCAACTGCACTCTTAATTCGAATAGAGCTCATGTGACGCCATTGCTCCATCTCAACCAACTTCTCAACGACTTGCGTGCTGATGTGGTTTCCATAAAGATGTAAAGTATCCAAAAAAGAGGCATCTACTTGTCCCAAAATTTCAAGAAAACTTTCGTTTTCTATTGGACCATCCCATTTGAAATATTGTACTTTCCAAGGTGCAGAAACGCCTTCTCGCTTTCGTTGATCGATCACCTCCACTATCTTGTTTCCCAGCTCTTTTATTCCCAATGGATATTCCTCACATCCAAGGATCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>234 222 211 201 69 63</canonical_bands>
                <polymorphic_bands>456 211 201 69 63</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>207 172 156 110 107 80 75 40 26 16 11</canonical_bands>
                <polymorphic_bands>207 198 156 110 107 80 75 40 16 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATACTCACTTCAGATGCTCCT</pcr_primer_p1>
		<pcr_primer_p2>GTTTGGATATCAAAGTTGTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TAATACTCACTTCAGATGCTCCTCCGATGGGTCAATACGGAAATGTTCCATCACTTTCACATTGAATTCTCTCGACATTTCTTGTTGCGTTAGAATCATGAAGTGCGCATCCGATTTTGCGTGTCGGCTGATGAAGTTCTGAAACCCCTTGCCATTTCAAAAACATCACTTCTAGATGCTAGGTATACCTTCAAATAATCAGTCATAGCTTCTGGATTCAATTCAACAACTTTGATATCCAAAC</canonical_amplicon>
		<polymorphic_amplicon>TAATACTCACTTCAGATGCTCCTCCGATGGGTCAATACGGAAATGTTCCATCACTTTCACATTGAATTCTCTCGRCATTTCTTGTTGCGTTAGAATCATGAAGTGCGCATCCGATTTTGCGTGTCGGCTGATGAAGTTCTGAAACCCCTTGCCATTTCAAAAACATCACTTCTAGATGCTAGGTATACCTTCAAATAATCAGTCATAGCTTCTGGATTCAATTCAACAACTTTGATATCCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33743</snp_id>
        <super_contig>c008401196.Contig2</super_contig>
        <contig_pos>107580</contig_pos>
        <strand>+</strand>
        <context>CGTTAGAATC[A/T]TGAAGTGCGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCATCACTTTCACATTGAATTCTCTCGACATTTCTTGTTGCGTTAGAATC</left_flank>
        <right_flank>TGAAGTGCGCATCCGATTTTGCGTGTCGGCTGATGAAGTTCTGAAACCCC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGTATGGAGAAGATTCGGTATGTGTATGGTGGTTTAGTTATGCTGATGGTGCTGAAAATATAAATCATGGTAATACAGCTCACTAGAGTTACACTTCATGACCTACAAATATTAGAAAGCCCATAAAATTCTGATTCGGAATGTGTTTTCTGTTCTTGCAAAGCGTCGGTGAGCTTCGAGAAAATTAGGTCTCAAGAAGTTGTAATGCTAGTTAAACCTGTTGATTTTGCATTGAAATTCGAGGTTCAACTAGCACTAAAATTTCTTGTGACCTAATTTTTCCAAGCTCACCGCCGTTTCGCGAAAACAAAAAACACCTTCCGAATCAGAATTTTATGGGCTATAATATAGGTGACGTGTAACTTGGGATCCCGCTCAGATAGTTCCATAGCCATCCCTTATAATACTCACTTCAGATGCTCCTCCGATGGGTCAATACGGAAATGTTCCATCACTTTCACATTGAATTCTCTCGACATTTCTTGTTGCGTTAGAATCATGAAGTGCGCATCCGATTTTGCGTGTCGGCTGATGAAGTTCTGAAACCCCTTGCCATTTCAAAAACATCACTTCTAGATGCTAGGTATACCTTCAAATAATCAGTCATAGCTTCTGGATTCAATTCAACAACTTTGATATCCAAACTGTGGCATTGATAGAAGGGACGGAGATCCAGGTCAACTGCACTCTTAATTCGAATAGAGCTCATGTGACGCCATTGCTCCATCTCAACCAACTTCTCAACGACTTGCGTGCTGATGTGGTTTCCATAAAGATGTAAAGTATCCAAAAAAGAGGCATCTACTTGTCCCAAAATTTCAAGAAAACTTTCGTTTTCTATTGGACCATCCCATTTGAAATATTGTACTTTCCAAGGTGCAGAAACGCCTTCTCGCTTTCGTTGATCGATCACCTCCACTATCTTGTTTCCCAGCTCTTTTATTCCCAATGGATATTCCTCACATCCAAGGATCAACAATTTGAAAACCACCGCATCAG</canonical>
            <polymorphic>GGGTATGGAGAAGATTCGGTATGTGTATGGTGGTTTAGTTATGCTGATGGTGCTGAAAATATAAATCATGGTAATACAGCTCACTAGAGTTACACTTCATGACCTACAAATATTAGAAAGCCCATAAAATTCTGATTCGGAATGTGTTTTCTGTTCTTGCAAAGCGTCGGTGAGCTTCGAGAAAATTAGGTCTCAAGAAGTTGTAATGCTAGTTAAACCTGTTGATTTTGCATTGAAATTCGAGGTTCAACTAGCACTAAAATTTCTTGTGACCTAATTTTTCCAAGCTCACCGCCGTTTCGCGAAAACAAAAAACACCTTCCGAATCAGAATTTTATGGGCTATAATATAGGTGACGTGTAACTTGGGATCCCGCTCAGATAGTTCCATAGCCATCCCTTATAATACTCACTTCAGATGCTCCTCCGATGGGTCAATACGGAAATGTTCCATCACTTTCACATTGAATTCTCTCGACATTTCTTGTTGCGTTAGAATCWTGAAGTGCGCATCCGATTTTGCGTGTCGGCTGATGAAGTTCTGAAACCCCTTGCCATTTCAAAAACATCACTTCTAGATGCTAGGTATACCTTCAAATAATCAGTCATAGCTTCTGGATTCAATTCAACAACTTTGATATCCAAACTGTGGCATTGATAGAAGGGACGGAGATCCAGGTCAACTGCACTCTTAATTCGAATAGAGCTCATGTGACGCCATTGCTCCATCTCAACCAACTTCTCAACGACTTGCGTGCTGATGTGGTTTCCATAAAGATGTAAAGTATCCAAAAAAGAGGCATCTACTTGTCCCAAAATTTCAAGAAAACTTTCGTTTTCTATTGGACCATCCCATTTGAAATATTGTACTTTCCAAGGTGCAGAAACGCCTTCTCGCTTTCGTTGATCGATCACCTCCACTATCTTGTTTCCCAGCTCTTTTATTCCCAATGGATATTCCTCACATCCAAGGATCAACAATTTGAAAACCACCGCATCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 401 97</canonical_bands>
                <polymorphic_bands>903 97</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>401 292 209 67 31</canonical_bands>
                <polymorphic_bands>610 292 67 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATACTCACTTCAGATGCTCCT</pcr_primer_p1>
		<pcr_primer_p2>GTTTGGATATCAAAGTTGTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TAATACTCACTTCAGATGCTCCTCCGATGGGTCAATACGGAAATGTTCCATCACTTTCACATTGAATTCTCTCGACATTTCTTGTTGCGTTAGAATCATGAAGTGCGCATCCGATTTTGCGTGTCGGCTGATGAAGTTCTGAAACCCCTTGCCATTTCAAAAACATCACTTCTAGATGCTAGGTATACCTTCAAATAATCAGTCATAGCTTCTGGATTCAATTCAACAACTTTGATATCCAAAC</canonical_amplicon>
		<polymorphic_amplicon>TAATACTCACTTCAGATGCTCCTCCGATGGGTCAATACGGAAATGTTCCATCACTTTCACATTGAATTCTCTCGACATTTCTTGTTGCGTTAGAATCWTGAAGTGCGCATCCGATTTTGCGTGTCGGCTGATGAAGTTCTGAAACCCCTTGCCATTTCAAAAACATCACTTCTAGATGCTAGGTATACCTTCAAATAATCAGTCATAGCTTCTGGATTCAATTCAACAACTTTGATATCCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33744</snp_id>
        <super_contig>c008401196.Contig2</super_contig>
        <contig_pos>107600</contig_pos>
        <strand>+</strand>
        <context>CATCCGATTT[G/T]GCGTGTCGGY</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTCTCGACATTTCTTGTTGCGTTAGAATCATGAAGTGCGCATCCGATTT</left_flank>
        <right_flank>GCGTGTCGGCTGATGAAGTTCTGAAACCCCTTGCCATTTCAAAAACATCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTGTATGGTGGTTTAGTTATGCTGATGGTGCTGAAAATATAAATCATGGTAATACAGCTCACTAGAGTTACACTTCATGACCTACAAATATTAGAAAGCCCATAAAATTCTGATTCGGAATGTGTTTTCTGTTCTTGCAAAGCGTCGGTGAGCTTCGAGAAAATTAGGTCTCAAGAAGTTGTAATGCTAGTTAAACCTGTTGATTTTGCATTGAAATTCGAGGTTCAACTAGCACTAAAATTTCTTGTGACCTAATTTTTCCAAGCTCACCGCCGTTTCGCGAAAACAAAAAACACCTTCCGAATCAGAATTTTATGGGCTATAATATAGGTGACGTGTAACTTGGGATCCCGCTCAGATAGTTCCATAGCCATCCCTTATAATACTCACTTCAGATGCTCCTCCGATGGGTCAATACGGAAATGTTCCATCACTTTCACATTGAATTCTCTCGACATTTCTTGTTGCGTTAGAATCATGAAGTGCGCATCCGATTTTGCGTGTCGGCTGATGAAGTTCTGAAACCCCTTGCCATTTCAAAAACATCACTTCTAGATGCTAGGTATACCTTCAAATAATCAGTCATAGCTTCTGGATTCAATTCAACAACTTTGATATCCAAACTGTGGCATTGATAGAAGGGACGGAGATCCAGGTCAACTGCACTCTTAATTCGAATAGAGCTCATGTGACGCCATTGCTCCATCTCAACCAACTTCTCAACGACTTGCGTGCTGATGTGGTTTCCATAAAGATGTAAAGTATCCAAAAAAGAGGCATCTACTTGTCCCAAAATTTCAAGAAAACTTTCGTTTTCTATTGGACCATCCCATTTGAAATATTGTACTTTCCAAGGTGCAGAAACGCCTTCTCGCTTTCGTTGATCGATCACCTCCACTATCTTGTTTCCCAGCTCTTTTATTCCCAATGGATATTCCTCACATCCAAGGATCAACAATTTGAAAACCACCGCATCAGGGTGTTTGAATGTGTCAACC</canonical>
            <polymorphic>ATGTGTATGGTGGTTTAGTTATGCTGATGGTGCTGAAAATATAAATCATGGTAATACAGCTCACTAGAGTTACACTTCATGACCTACAAATATTAGAAAGCCCATAAAATTCTGATTCGGAATGTGTTTTCTGTTCTTGCAAAGCGTCGGTGAGCTTCGAGAAAATTAGGTCTCAAGAAGTTGTAATGCTAGTTAAACCTGTTGATTTTGCATTGAAATTCGAGGTTCAACTAGCACTAAAATTTCTTGTGACCTAATTTTTCCAAGCTCACCGCCGTTTCGCGAAAACAAAAAACACCTTCCGAATCAGAATTTTATGGGCTATAATATAGGTGACGTGTAACTTGGGATCCCGCTCAGATAGTTCCATAGCCATCCCTTATAATACTCACTTCAGATGCTCCTCCGATGGGTCAATACGGAAATGTTCCATCACTTTCACATTGAATTCTCTCGACATTTCTTGTTGCGTTAGAATCATGAAGTGCGCATCCGATTTKGCGTGTCGGCTGATGAAGTTCTGAAACCCCTTGCCATTTCAAAAACATCACTTCTAGATGCTAGGTATACCTTCAAATAATCAGTCATAGCTTCTGGATTCAATTCAACAACTTTGATATCCAAACTGTGGCATTGATAGAAGGGACGGAGATCCAGGTCAACTGCACTCTTAATTCGAATAGAGCTCATGTGACGCCATTGCTCCATCTCAACCAACTTCTCAACGACTTGCGTGCTGATGTGGTTTCCATAAAGATGTAAAGTATCCAAAAAAGAGGCATCTACTTGTCCCAAAATTTCAAGAAAACTTTCGTTTTCTATTGGACCATCCCATTTGAAATATTGTACTTTCCAAGGTGCAGAAACGCCTTCTCGCTTTCGTTGATCGATCACCTCCACTATCTTGTTTCCCAGCTCTTTTATTCCCAATGGATATTCCTCACATCCAAGGATCAACAATTTGAAAACCACCGCATCAGGGTGTTTGAATGTGTCAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCACTTTCACATTGAATTCTCTC</pcr_primer_p1>
		<pcr_primer_p2>CTATTCGAATTAAGAGTGCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCACTTTCACATTGAATTCTCTCGACATTTCTTGTTGCGTTAGAATCATGAAGTGCGCATCCGATTTTGCGTGTCGGCTGATGAAGTTCTGAAACCCCTTGCCATTTCAAAAACATCACTTCTAGATGCTAGGTATACCTTCAAATAATCAGTCATAGCTTCTGGATTCAATTCAACAACTTTGATATCCAAACTGTGGCATTGATAGAAGGGACGGAGATCCAGGTCAACTGCACTCTTAATTCGAATAG</canonical_amplicon>
		<polymorphic_amplicon>TCACTTTCACATTGAATTCTCTCGACATTTCTTGTTGCGTTAGAATCATGAAGTGCGCATCCGATTTKGCGTGTCGGCTGATGAAGTTCTGAAACCCCTTGCCATTTCAAAAACATCACTTCTAGATGCTAGGTATACCTTCAAATAATCAGTCATAGCTTCTGGATTCAATTCAACAACTTTGATATCCAAACTGTGGCATTGATAGAAGGGACGGAGATCCAGGTCAACTGCACTCTTAATTCGAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33745</snp_id>
        <super_contig>c008401196.Contig2</super_contig>
        <contig_pos>107610</contig_pos>
        <strand>+</strand>
        <context>KGCGTGTCGG[C/T]TGATGAAGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCTTGTTGCGTTAGAATCATGAAGTGCGCATCCGATTTTGCGTGTCGG</left_flank>
        <right_flank>TGATGAAGTTCTGAAACCCCTTGCCATTTCAAAAACATCACTTCTAGATG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTTTAGTTATGCTGATGGTGCTGAAAATATAAATCATGGTAATACAGCTCACTAGAGTTACACTTCATGACCTACAAATATTAGAAAGCCCATAAAATTCTGATTCGGAATGTGTTTTCTGTTCTTGCAAAGCGTCGGTGAGCTTCGAGAAAATTAGGTCTCAAGAAGTTGTAATGCTAGTTAAACCTGTTGATTTTGCATTGAAATTCGAGGTTCAACTAGCACTAAAATTTCTTGTGACCTAATTTTTCCAAGCTCACCGCCGTTTCGCGAAAACAAAAAACACCTTCCGAATCAGAATTTTATGGGCTATAATATAGGTGACGTGTAACTTGGGATCCCGCTCAGATAGTTCCATAGCCATCCCTTATAATACTCACTTCAGATGCTCCTCCGATGGGTCAATACGGAAATGTTCCATCACTTTCACATTGAATTCTCTCGACATTTCTTGTTGCGTTAGAATCATGAAGTGCGCATCCGATTTTGCGTGTCGGCTGATGAAGTTCTGAAACCCCTTGCCATTTCAAAAACATCACTTCTAGATGCTAGGTATACCTTCAAATAATCAGTCATAGCTTCTGGATTCAATTCAACAACTTTGATATCCAAACTGTGGCATTGATAGAAGGGACGGAGATCCAGGTCAACTGCACTCTTAATTCGAATAGAGCTCATGTGACGCCATTGCTCCATCTCAACCAACTTCTCAACGACTTGCGTGCTGATGTGGTTTCCATAAAGATGTAAAGTATCCAAAAAAGAGGCATCTACTTGTCCCAAAATTTCAAGAAAACTTTCGTTTTCTATTGGACCATCCCATTTGAAATATTGTACTTTCCAAGGTGCAGAAACGCCTTCTCGCTTTCGTTGATCGATCACCTCCACTATCTTGTTTCCCAGCTCTTTTATTCCCAATGGATATTCCTCACATCCAAGGATCAACAATTTGAAAACCACCGCATCAGGGTGTTTGAATGTGTCAACCAGCATTCTCG</canonical>
            <polymorphic>TGGTTTAGTTATGCTGATGGTGCTGAAAATATAAATCATGGTAATACAGCTCACTAGAGTTACACTTCATGACCTACAAATATTAGAAAGCCCATAAAATTCTGATTCGGAATGTGTTTTCTGTTCTTGCAAAGCGTCGGTGAGCTTCGAGAAAATTAGGTCTCAAGAAGTTGTAATGCTAGTTAAACCTGTTGATTTTGCATTGAAATTCGAGGTTCAACTAGCACTAAAATTTCTTGTGACCTAATTTTTCCAAGCTCACCGCCGTTTCGCGAAAACAAAAAACACCTTCCGAATCAGAATTTTATGGGCTATAATATAGGTGACGTGTAACTTGGGATCCCGCTCAGATAGTTCCATAGCCATCCCTTATAATACTCACTTCAGATGCTCCTCCGATGGGTCAATACGGAAATGTTCCATCACTTTCACATTGAATTCTCTCGACATTTCTTGTTGCGTTAGAATCATGAAGTGCGCATCCGATTTTGCGTGTCGGYTGATGAAGTTCTGAAACCCCTTGCCATTTCAAAAACATCACTTCTAGATGCTAGGTATACCTTCAAATAATCAGTCATAGCTTCTGGATTCAATTCAACAACTTTGATATCCAAACTGTGGCATTGATAGAAGGGACGGAGATCCAGGTCAACTGCACTCTTAATTCGAATAGAGCTCATGTGACGCCATTGCTCCATCTCAACCAACTTCTCAACGACTTGCGTGCTGATGTGGTTTCCATAAAGATGTAAAGTATCCAAAAAAGAGGCATCTACTTGTCCCAAAATTTCAAGAAAACTTTCGTTTTCTATTGGACCATCCCATTTGAAATATTGTACTTTCCAAGGTGCAGAAACGCCTTCTCGCTTTCGTTGATCGATCACCTCCACTATCTTGTTTCCCAGCTCTTTTATTCCCAATGGATATTCCTCACATCCAAGGATCAACAATTTGAAAACCACCGCATCAGGGTGTTTGAATGTGTCAACCAGCATTCTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>230 137 113 95 95 81 54 54 51 49 41</canonical_bands>
                <polymorphic_bands>230 218 113 95 95 54 54 51 49 41</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCACTTTCACATTGAATTCTCTC</pcr_primer_p1>
		<pcr_primer_p2>CTATTCGAATTAAGAGTGCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCACTTTCACATTGAATTCTCTCGACATTTCTTGTTGCGTTAGAATCATGAAGTGCGCATCCGATTTTGCGTGTCGGCTGATGAAGTTCTGAAACCCCTTGCCATTTCAAAAACATCACTTCTAGATGCTAGGTATACCTTCAAATAATCAGTCATAGCTTCTGGATTCAATTCAACAACTTTGATATCCAAACTGTGGCATTGATAGAAGGGACGGAGATCCAGGTCAACTGCACTCTTAATTCGAATAG</canonical_amplicon>
		<polymorphic_amplicon>TCACTTTCACATTGAATTCTCTCGACATTTCTTGTTGCGTTAGAATCATGAAGTGCGCATCCGATTTTGCGTGTCGGYTGATGAAGTTCTGAAACCCCTTGCCATTTCAAAAACATCACTTCTAGATGCTAGGTATACCTTCAAATAATCAGTCATAGCTTCTGGATTCAATTCAACAACTTTGATATCCAAACTGTGGCATTGATAGAAGGGACGGAGATCCAGGTCAACTGCACTCTTAATTCGAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33746</snp_id>
        <super_contig>c008401196.Contig2</super_contig>
        <contig_pos>110717</contig_pos>
        <strand>+</strand>
        <context>TCACACTTGA[C/T]AAGGAATCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCATCTCGATCCGTGAGAATCCAACCTTCCGATCCATCTTCACACTTGA</left_flank>
        <right_flank>AAGGAATCTCAAGACGAAGCCGTGTTGACCATCATGACTAACGAGATGGT</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCTCTCCTTCTTTCCCAAGGCTCCTCACACCCACAGAATTCATATAAAAATAGGATTTTTCAGATTTTTTGTTAGCTACGTCAGCTGCTCCTTTCAAGCTTAGTGTTTCGTAAAATATACCTTATCAACTCTTACTTTTTAGAAGTCTGGCATGATGTTCTTCGTATCCAACTTCCCGTTTGTTGAGAGACAACAACGTACGAACAATGTTCCGAAAGAAGATCAACGTCCAAGTGGTCATCGAATGCTGCCAGAATTTGAGAAGGAAATCGTCCGACATCTGAACATTTTGGATCGGTAAGTTTTATAAGCTCCTATCACCTATGTATAAATTAACCAACTTTGTAGCTCGACTCTCCGCAAAACTTGCCACGCTGGCCGCATCCTTGCCGACACCCAGCCATACAACATCGAAGCCTTCAGTCTCCATAGCAACTCCCACGACGTCAGCATCTCGATCCGTGAGAATCCAACCTTCCGATCCATCTTCACACTTGATAAGGAATCTCAAGACGAAGCCGTGTTGACCATCATGACTAACGAGATGGTTATGATCAGACACTTTGGCATTGTCACCCGTCGCGGCATTTCGGGAGACGTCATCCATCAATGGGTCGAGAAGCTTAAGAACGCCGGAGTTCGTCGTCTGATGGTTAATCAGATTCACATTGTATACGACTTGTTCTCCAAGGATGTACCGAAGGAGAGACGTGGAAGAACAGAGGCTGGAATCCGAGAGCTCATCGAGATGTGTGTGCCAGGAGTTCTAACGTCGATCGTCATTGATATCGACTTCATTGATCTCACATGGACCGACATCGTCAAGAGTCAGCAATGGAAAATGGCGACCGAGATTCGTGTTGTTGGGGGAGGAAAATGAATACTGTAAAACCTGTAATAGAAGAGCACCCTAACTTTTTCCTTTGAGCCAATTTATCTCGGTTCCTGTCAAAGATATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAA</canonical>
            <polymorphic>CCCTCTCCTTCTTTCCCAAGGCTCCTCACACCCACAGAATTCATATAAAAATAGGATTTTTCAGATTTTTTGTTAGCTACGTCAGCTGCTCCTTTCAAGCTTAGTGTTTCGTAAAATATACCTTATCAACTCTTACTTTTTAGAAGTCTGGCATGATGTTCTTCGTATCCAACTTCCCGTTTGTTGAGAGACAACAACGTACGAACAATGTTCCGAAAGAAGATCAACGTCCAAGTGGTCATCGAATGCTGCCAGAATTTGAGAAGGAAATCGTCCGACATCTGAACATTTTGGATCGGTAAGTTTTATAAGCTCCTATCACCTATGTATAAATTAACCAACTTTGTAGCTCGACTCTCCGCAAAACTTGCCACGCTGGCCGCATCCTTGCCGACACCCAGCCATACAACATCGAAGCCTTCAGTCTCCATAGCAACTCCCACGACGTCAGCATCTCGATCCGTGAGAATCCAACCTTCCGATCCATCTTCACACTTGAYAAGGAATCTCAAGACGAAGCCGTGTTGACCATCATGACTAACGAGATGGTTATGATCAGACACTTTGGCATTGTCACCCGTCGCGGCATTTCGGGAGACGTCATCCATCAATGGGTCGAGAAGCTTAAGAACGCCGGAGTTCGTCGTCTGATGGTTAATCAGATTCACATTGTATACGACTTGTTCTCCAAGGATGTACCGAAGGAGAGACGTGGAAGAACAGAGGCTGGAATCCGAGAGCTCATCGAGATGTGTGTGCCAGGAGTTCTAACGTCGATCGTCATTGATATCGACTTCATTGATCTCACATGGACCGACATCGTCAAGAGTCAGCAATGGAAAATGGCGACCGAGATTCGTGTTGTTGGGGGAGGAAAATGAATACTGTAAAACCTGTAATAGAAGAGCACCCTAACTTTTTCCTTTGAGCCAATTTATCTCGGTTCCTGTCAAAGATATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCCTTCAGTCTCCATAGC</pcr_primer_p1>
		<pcr_primer_p2>ATCTGATTAACCATCAGACGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGCCTTCAGTCTCCATAGCAACTCCCACGACGTCAGCATCTCGATCCGTGAGAATCCAACCTTCCGATCCATCTTCACACTTGATAAGGAATCTCAAGACGAAGCCGTGTTGACCATCATGACTAACGAGATGGTTATGATCAGACACTTTGGCATTGTCACCCGTCGCGGCATTTCGGGAGACGTCATCCATCAATGGGTCGAGAAGCTTAAGAACGCCGGAGTTCGTCGTCTGATGGTTAATCAGAT</canonical_amplicon>
		<polymorphic_amplicon>AAGCCTTCAGTCTCCATAGCAACTCCCACGACGTCAGCATCTCGATCCGTGAGAATCCAACCTTCCGATCCATCTTCACACTTGAYAAGGAATCTCAAGACGAAGCCGTGTTGACCATCATGACTAACGAGATGGTTATGATCAGACACTTTGGCATTGTCACCCGTCGCGGCATTTCGGGAGACGTCATCCATCAATGGGTCGAGAAGCTTAAGAACGCCGGAGTTCGTCGTCTGATGGTTAATCAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33747</snp_id>
        <super_contig>c008401196.Contig2</super_contig>
        <contig_pos>110776</contig_pos>
        <strand>+</strand>
        <context>GTTATGATCA[C/G]ACACTTTGGC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCAAGACGAAGCCGTGTTGACCATCATGACTAACGAGATGGTTATGATCA</left_flank>
        <right_flank>ACACTTTGGCATTGTCACCCGTCGCGGCATTTCGGGAGACGTCATCCATC</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAGATTTTTTGTTAGCTACGTCAGCTGCTCCTTTCAAGCTTAGTGTTTCGTAAAATATACCTTATCAACTCTTACTTTTTAGAAGTCTGGCATGATGTTCTTCGTATCCAACTTCCCGTTTGTTGAGAGACAACAACGTACGAACAATGTTCCGAAAGAAGATCAACGTCCAAGTGGTCATCGAATGCTGCCAGAATTTGAGAAGGAAATCGTCCGACATCTGAACATTTTGGATCGGTAAGTTTTATAAGCTCCTATCACCTATGTATAAATTAACCAACTTTGTAGCTCGACTCTCCGCAAAACTTGCCACGCTGGCCGCATCCTTGCCGACACCCAGCCATACAACATCGAAGCCTTCAGTCTCCATAGCAACTCCCACGACGTCAGCATCTCGATCCGTGAGAATCCAACCTTCCGATCCATCTTCACACTTGATAAGGAATCTCAAGACGAAGCCGTGTTGACCATCATGACTAACGAGATGGTTATGATCAGACACTTTGGCATTGTCACCCGTCGCGGCATTTCGGGAGACGTCATCCATCAATGGGTCGAGAAGCTTAAGAACGCCGGAGTTCGTCGTCTGATGGTTAATCAGATTCACATTGTATACGACTTGTTCTCCAAGGATGTACCGAAGGAGAGACGTGGAAGAACAGAGGCTGGAATCCGAGAGCTCATCGAGATGTGTGTGCCAGGAGTTCTAACGTCGATCGTCATTGATATCGACTTCATTGATCTCACATGGACCGACATCGTCAAGAGTCAGCAATGGAAAATGGCGACCGAGATTCGTGTTGTTGGGGGAGGAAAATGAATACTGTAAAACCTGTAATAGAAGAGCACCCTAACTTTTTCCTTTGAGCCAATTTATCTCGGTTCCTGTCAAAGATATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAAAAGTTTTTTGTCAGTTGACAATATCTTGCACAGTAGCCAAGATAAATTAGCTCAAACTT</canonical>
            <polymorphic>TTCAGATTTTTTGTTAGCTACGTCAGCTGCTCCTTTCAAGCTTAGTGTTTCGTAAAATATACCTTATCAACTCTTACTTTTTAGAAGTCTGGCATGATGTTCTTCGTATCCAACTTCCCGTTTGTTGAGAGACAACAACGTACGAACAATGTTCCGAAAGAAGATCAACGTCCAAGTGGTCATCGAATGCTGCCAGAATTTGAGAAGGAAATCGTCCGACATCTGAACATTTTGGATCGGTAAGTTTTATAAGCTCCTATCACCTATGTATAAATTAACCAACTTTGTAGCTCGACTCTCCGCAAAACTTGCCACGCTGGCCGCATCCTTGCCGACACCCAGCCATACAACATCGAAGCCTTCAGTCTCCATAGCAACTCCCACGACGTCAGCATCTCGATCCGTGAGAATCCAACCTTCCGATCCATCTTCACACTTGATAAGGAATCTCAAGACGAAGCCGTGTTGACCATCATGACTAACGAGATGGTTATGATCASACACTTTGGCATTGTCACCCGTCGCGGCATTTCGGGAGACGTCATCCATCAATGGGTCGAGAAGCTTAAGAACGCCGGAGTTCGTCGTCTGATGGTTAATCAGATTCACATTGTATACGACTTGTTCTCCAAGGATGTACCGAAGGAGAGACGTGGAAGAACAGAGGCTGGAATCCGAGAGCTCATCGAGATGTGTGTGCCAGGAGTTCTAACGTCGATCGTCATTGATATCGACTTCATTGATCTCACATGGACCGACATCGTCAAGAGTCAGCAATGGAAAATGGCGACCGAGATTCGTGTTGTTGGGGGAGGAAAATGAATACTGTAAAACCTGTAATAGAAGAGCACCCTAACTTTTTCCTTTGAGCCAATTTATCTCGGTTCCTGTCAAAGATATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAAAAGTTTTTTGTCAGTTGACAATATCTTGCACAGTAGCCAAGATAAATTAGCTCAAACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>324 197 151 91 78 74 62 12 7 4</canonical_bands>
                <polymorphic_bands>324 197 169 151 74 62 12 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCCTTCAGTCTCCATAGC</pcr_primer_p1>
		<pcr_primer_p2>ATCTGATTAACCATCAGACGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGCCTTCAGTCTCCATAGCAACTCCCACGACGTCAGCATCTCGATCCGTGAGAATCCAACCTTCCGATCCATCTTCACACTTGATAAGGAATCTCAAGACGAAGCCGTGTTGACCATCATGACTAACGAGATGGTTATGATCAGACACTTTGGCATTGTCACCCGTCGCGGCATTTCGGGAGACGTCATCCATCAATGGGTCGAGAAGCTTAAGAACGCCGGAGTTCGTCGTCTGATGGTTAATCAGAT</canonical_amplicon>
		<polymorphic_amplicon>AAGCCTTCAGTCTCCATAGCAACTCCCACGACGTCAGCATCTCGATCCGTGAGAATCCAACCTTCCGATCCATCTTCACACTTGATAAGGAATCTCAAGACGAAGCCGTGTTGACCATCATGACTAACGAGATGGTTATGATCASACACTTTGGCATTGTCACCCGTCGCGGCATTTCGGGAGACGTCATCCATCAATGGGTCGAGAAGCTTAAGAACGCCGGAGTTCGTCGTCTGATGGTTAATCAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33748</snp_id>
        <super_contig>c008401196.Contig2</super_contig>
        <contig_pos>110963</contig_pos>
        <strand>+</strand>
        <context>GAGAGCTCAT[C/T]GAGATGTGTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTACCGAAGGAGAGACGTGGAAGAACAGAGGCTGGAATCCGAGAGCTCAT</left_flank>
        <right_flank>GAGATGTGTGTGCCAGGAGTTCTAACGTCGATCGTCATTGATATCGACTT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCTGCCAGAATTTGAGAAGGAAATCGTCCGACATCTGAACATTTTGGATCGGTAAGTTTTATAAGCTCCTATCACCTATGTATAAATTAACCAACTTTGTAGCTCGACTCTCCGCAAAACTTGCCACGCTGGCCGCATCCTTGCCGACACCCAGCCATACAACATCGAAGCCTTCAGTCTCCATAGCAACTCCCACGACGTCAGCATCTCGATCCGTGAGAATCCAACCTTCCGATCCATCTTCACACTTGATAAGGAATCTCAAGACGAAGCCGTGTTGACCATCATGACTAACGAGATGGTTATGATCAGACACTTTGGCATTGTCACCCGTCGCGGCATTTCGGGAGACGTCATCCATCAATGGGTCGAGAAGCTTAAGAACGCCGGAGTTCGTCGTCTGATGGTTAATCAGATTCACATTGTATACGACTTGTTCTCCAAGGATGTACCGAAGGAGAGACGTGGAAGAACAGAGGCTGGAATCCGAGAGCTCATCGAGATGTGTGTGCCAGGAGTTCTAACGTCGATCGTCATTGATATCGACTTCATTGATCTCACATGGACCGACATCGTCAAGAGTCAGCAATGGAAAATGGCGACCGAGATTCGTGTTGTTGGGGGAGGAAAATGAATACTGTAAAACCTGTAATAGAAGAGCACCCTAACTTTTTCCTTTGAGCCAATTTATCTCGGTTCCTGTCAAAGATATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAAAAGTTTTTTGTCAGTTGACAATATCTTGCACAGTAGCCAAGATAAATTAGCTCAAACTTGATAACGTGGGGTCCTTCTGTTACAGGTTTCACGGTAAACCGTGTGCAGGAGAGTTTGTGCAATTTGCTTCATATATAATTAGTTTTTGTGATAATGTGATATAATAGATAATTGCAATATCAACCAATAAAGTACTATATATTTGTGATTTACAATGAATACAAAATTTTATCAATTCAGATGGAA</canonical>
            <polymorphic>TGCTGCCAGAATTTGAGAAGGAAATCGTCCGACATCTGAACATTTTGGATCGGTAAGTTTTATAAGCTCCTATCACCTATGTATAAATTAACCAACTTTGTAGCTCGACTCTCCGCAAAACTTGCCACGCTGGCCGCATCCTTGCCGACACCCAGCCATACAACATCGAAGCCTTCAGTCTCCATAGCAACTCCCACGACGTCAGCATCTCGATCCGTGAGAATCCAACCTTCCGATCCATCTTCACACTTGATAAGGAATCTCAAGACGAAGCCGTGTTGACCATCATGACTAACGAGATGGTTATGATCAGACACTTTGGCATTGTCACCCGTCGCGGCATTTCGGGAGACGTCATCCATCAATGGGTCGAGAAGCTTAAGAACGCCGGAGTTCGTCGTCTGATGGTTAATCAGATTCACATTGTATACGACTTGTTCTCCAAGGATGTACCGAAGGAGAGACGTGGAAGAACAGAGGCTGGAATCCGAGAGCTCATYGAGATGTGTGTGCCAGGAGTTCTAACGTCGATCGTCATTGATATCGACTTCATTGATCTCACATGGACCGACATCGTCAAGAGTCAGCAATGGAAAATGGCGACCGAGATTCGTGTTGTTGGGGGAGGAAAATGAATACTGTAAAACCTGTAATAGAAGAGCACCCTAACTTTTTCCTTTGAGCCAATTTATCTCGGTTCCTGTCAAAGATATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAAAAGTTTTTTGTCAGTTGACAATATCTTGCACAGTAGCCAAGATAAATTAGCTCAAACTTGATAACGTGGGGTCCTTCTGTTACAGGTTTCACGGTAAACCGTGTGCAGGAGAGTTTGTGCAATTTGCTTCATATATAATTAGTTTTTGTGATAATGTGATATAATAGATAATTGCAATATCAACCAATAAAGTACTATATATTTGTGATTTACAATGAATACAAAATTTTATCAATTCAGATGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>455 160 129 106 61 44 29 16</canonical_bands>
                <polymorphic_bands>455 160 158 106 61 44 16</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>422 209 129 78 59 55 25 23</canonical_bands>
                <polymorphic_bands>422 209 207 59 55 25 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGTCGAGAAGCTTAAGAAC</pcr_primer_p1>
		<pcr_primer_p2>CATTTTCCATTGCTGACTCT</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>GGGTCGAGAAGCTTAAGAACGCCGGAGTTCGTCGTCTGATGGTTAATCAGATTCACATTGTATACGACTTGTTCTCCAAGGATGTACCGAAGGAGAGACGTGGAAGAACAGAGGCTGGAATCCGAGAGCTCATCGAGATGTGTGTGCCAGGAGTTCTAACGTCGATCGTCATTGATATCGACTTCATTGATCTCACATGGACCGACATCGTCAAGAGTCAGCAATGGAAAATG</canonical_amplicon>
		<polymorphic_amplicon>GGGTCGAGAAGCTTAAGAACGCCGGAGTTCGTCGTCTGATGGTTAATCAGATTCACATTGTATACGACTTGTTCTCCAAGGATGTACCGAAGGAGAGACGTGGAAGAACAGAGGCTGGAATCCGAGAGCTCATYGAGATGTGTGTGCCAGGAGTTCTAACGTCGATCGTCATTGATATCGACTTCATTGATCTCACATGGACCGACATCGTCAAGAGTCAGCAATGGAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33749</snp_id>
        <super_contig>c008401196.Contig2</super_contig>
        <contig_pos>111154</contig_pos>
        <strand></strand>
        <context>gagccaattt[A/T]tctcggttcc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTAAAACCTGTAATAGAAGAGCACCCTAACTTTTTCCTTTGAGCCAATTT</left_flank>
        <right_flank>TCTCGGTTCCTGTCAAAGATATAAAAAAGTTGTCAACTGATAAATTGTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCCACGACGTCAGCATCTCGATCCGTGAGAATCCAACCTTCCGATCCATCTTCACACTTGATAAGGAATCTCAAGACGAAGCCGTGTTGACCATCATGACTAACGAGATGGTTATGATCAGACACTTTGGCATTGTCACCCGTCGCGGCATTTCGGGAGACGTCATCCATCAATGGGTCGAGAAGCTTAAGAACGCCGGAGTTCGTCGTCTGATGGTTAATCAGATTCACATTGTATACGACTTGTTCTCCAAGGATGTACCGAAGGAGAGACGTGGAAGAACAGAGGCTGGAATCCGAGAGCTCATCGAGATGTGTGTGCCAGGAGTTCTAACGTCGATCGTCATTGATATCGACTTCATTGATCTCACATGGACCGACATCGTCAAGAGTCAGCAATGGAAAATGGCGACCGAGATTCGTGTTGTTGGGGGAGGAAAATGAATACTGTAAAACCTGTAATAGAAGAGCACCCTAACTTTTTCCTTTGAGCCAATTTATCTCGGTTCCTGTCAAAGATATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAAAAGTTTTTTGTCAGTTGACAATATCTTGCACAGTAGCCAAGATAAATTAGCTCAAACTTGATAACGTGGGGTCCTTCTGTTACAGGTTTCACGGTAAACCGTGTGCAGGAGAGTTTGTGCAATTTGCTTCATATATAATTAGTTTTTGTGATAATGTGATATAATAGATAATTGCAATATCAACCAATAAAGTACTATATATTTGTGATTTACAATGAATACAAAATTTTATCAATTCAGATGGAAATTTAGGACTTTTCAGGTCACGAAATTTGCATAACTTGCGAATTTCTCAATTTGATAGGTTCCCTACGTTTGAACAGATTTATTGAAACAATTAAGAACATTAACATCTAGATACTAGGGTTTGTTACTAGGGACTTACCGTAAGACCTGTATTAGAAGGGCTGGCTCTTTTATTTTTCTATGGTACCTCC</canonical>
            <polymorphic>TCCCACGACGTCAGCATCTCGATCCGTGAGAATCCAACCTTCCGATCCATCTTCACACTTGATAAGGAATCTCAAGACGAAGCCGTGTTGACCATCATGACTAACGAGATGGTTATGATCAGACACTTTGGCATTGTCACCCGTCGCGGCATTTCGGGAGACGTCATCCATCAATGGGTCGAGAAGCTTAAGAACGCCGGAGTTCGTCGTCTGATGGTTAATCAGATTCACATTGTATACGACTTGTTCTCCAAGGATGTACCGAAGGAGAGACGTGGAAGAACAGAGGCTGGAATCCGAGAGCTCATCGAGATGTGTGTGCCAGGAGTTCTAACGTCGATCGTCATTGATATCGACTTCATTGATCTCACATGGACCGACATCGTCAAGAGTCAGCAATGGAAAATGGCGACCGAGATTCGTGTTGTTGGGGGAGGAAAATGAATACTGTAAAACCTGTAATAGAAGAGCACCCTAACTTTTTCCTTTGAGCCAATTTWTCTCGGTTCCTGTCAAAGATATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAAAAGTTTTTTGTCAGTTGACAATATCTTGCACAGTAGCCAAGATAAATTAGCTCAAACTTGATAACGTGGGGTCCTTCTGTTACAGGTTTCACGGTAAACCGTGTGCAGGAGAGTTTGTGCAATTTGCTTCATATATAATTAGTTTTTGTGATAATGTGATATAATAGATAATTGCAATATCAACCAATAAAGTACTATATATTTGTGATTTACAATGAATACAAAATTTTATCAATTCAGATGGAAATTTAGGACTTTTCAGGTCACGAAATTTGCATAACTTGCGAATTTCTCAATTTGATAGGTTCCCTACGTTTGAACAGATTTATTGAAACAATTAAGAACATTAACATCTAGATACTAGGGTTTGTTACTAGGGACTTACCGTAAGACCTGTATTAGAAGGGCTGGCTCTTTTATTTTTCTATGGTACCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGTCAGCAATGGAAAATG</pcr_primer_p1>
		<pcr_primer_p2>CAAATTGCACAAACTCTCCT</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>AGAGTCAGCAATGGAAAATGGCGACCGAGATTCGTGTTGTTGGGGGAGGAAAATGAATACTGTAAAACCTGTAATAGAAGAGCACCCTAACTTTTTCCTTTGAGCCAATTTATCTCGGTTCCTGTCAAAGATATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAAAAGTTTTTTGTCAGTTGACAATATCTTGCACAGTAGCCAAGATAAATTAGCTCAAACTTGATAACGTGGGGTCCTTCTGTTACAGGTTTCACGGTAAACCGTGTGCAGGAGAGTTTGTGCAATTTG</canonical_amplicon>
		<polymorphic_amplicon>AGAGTCAGCAATGGAAAATGGCGACCGAGATTCGTGTTGTTGGGGGAGGAAAATGAATACTGTAAAACCTGTAATAGAAGAGCACCCTAACTTTTTCCTTTGAGCCAATTTWTCTCGGTTCCTGTCAAAGATATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAAAAGTTTTTTGTCAGTTGACAATATCTTGCACAGTAGCCAAGATAAATTAGCTCAAACTTGATAACGTGGGGTCCTTCTGTTACAGGTTTCACGGTAAACCGTGTGCAGGAGAGTTTGTGCAATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33750</snp_id>
        <super_contig>c008401483.Contig1</super_contig>
        <contig_pos>51213</contig_pos>
        <strand>+</strand>
        <context>TTAAGGATAC[C/T]GTAGTTATAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATAC</left_flank>
        <right_flank>GTAGTTATAGTCTATGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCAAAATGAGCCAAAAATCAGCTTAAACGGACTATTTTGAGCCAAGTTACGACAGTTTGAAGGAAACTTTGAAAAATGCATAATAAGCCAAATTTACATTTGAAGTTTTTGAGTCTTGTTTTTTAACTGTTAAAAAATTAAAAGTTCTACAGTACCCCAAAAAGATTAACGAACTTATTTTTCTTCTCATCTGGACCTACAAAAGTCACAAGTCTTCTTCTTTCTCTTCTTTTTCTTCTCTGAAGATCATCAAAACCATTTCTGGGTCCATATCTTTGTGAATAACAAAAGAAAGGGGATGGTTCAAGTGATAGATCTTTGTGTTCTTTTTTTTTTTGGAGATCAAACCGACCATGTGTCGACAACGTGTCCTCCACCATCGGAAAACATAAAATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTATGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATT</canonical>
            <polymorphic>CATCAAAATGAGCCAAAAATCAGCTTAAACGGACTATTTTGAGCCAAGTTACGACAGTTTGAAGGAAACTTTGAAAAATGCATAATAAGCCAAATTTACATTTGAAGTTTTTGAGTCTTGTTTTTTAACTGTTAAAAAATTAAAAGTTCTACAGTACCCCAAAAAGATTAACGAACTTATTTTTCTTCTCATCTGGACCTACAAAAGTCACAAGTCTTCTTCTTTCTCTTCTTTTTCTTCTCTGAAGATCATCAAAACCATTTCTGGGTCCATATCTTTGTGAATAACAAAAGAAAGGGGATGGTTCAAGTGATAGATCTTTGTGTTCTTTTTTTTTTTGGAGATCAAACCGACCATGTGTCGACAACGTGTCCTCCACCATCGGAAAACATAAAATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACYGTAGTTATAGTCTATGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCGGAAAACATAAAATATCAC</pcr_primer_p1>
		<pcr_primer_p2>AACAGTTATGGGATTTTGATAGA</pcr_primer_p2>
		<pcr_amplicon_size>218</pcr_amplicon_size>
		<canonical_amplicon>CATCGGAAAACATAAAATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTATGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTT</canonical_amplicon>
		<polymorphic_amplicon>CATCGGAAAACATAAAATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACYGTAGTTATAGTCTATGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33751</snp_id>
        <super_contig>c008401483.Contig1</super_contig>
        <contig_pos>51226</contig_pos>
        <strand>+</strand>
        <context>AGTTATAGTC[A/T]WTGAGATAMT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTC</left_flank>
        <right_flank>ATGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAATCAGCTTAAACGGACTATTTTGAGCCAAGTTACGACAGTTTGAAGGAAACTTTGAAAAATGCATAATAAGCCAAATTTACATTTGAAGTTTTTGAGTCTTGTTTTTTAACTGTTAAAAAATTAAAAGTTCTACAGTACCCCAAAAAGATTAACGAACTTATTTTTCTTCTCATCTGGACCTACAAAAGTCACAAGTCTTCTTCTTTCTCTTCTTTTTCTTCTCTGAAGATCATCAAAACCATTTCTGGGTCCATATCTTTGTGAATAACAAAAGAAAGGGGATGGTTCAAGTGATAGATCTTTGTGTTCTTTTTTTTTTTGGAGATCAAACCGACCATGTGTCGACAACGTGTCCTCCACCATCGGAAAACATAAAATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTATGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAACCTTT</canonical>
            <polymorphic>CAAAAATCAGCTTAAACGGACTATTTTGAGCCAAGTTACGACAGTTTGAAGGAAACTTTGAAAAATGCATAATAAGCCAAATTTACATTTGAAGTTTTTGAGTCTTGTTTTTTAACTGTTAAAAAATTAAAAGTTCTACAGTACCCCAAAAAGATTAACGAACTTATTTTTCTTCTCATCTGGACCTACAAAAGTCACAAGTCTTCTTCTTTCTCTTCTTTTTCTTCTCTGAAGATCATCAAAACCATTTCTGGGTCCATATCTTTGTGAATAACAAAAGAAAGGGGATGGTTCAAGTGATAGATCTTTGTGTTCTTTTTTTTTTTGGAGATCAAACCGACCATGTGTCGACAACGTGTCCTCCACCATCGGAAAACATAAAATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCWATGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAACCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCGGAAAACATAAAATATCAC</pcr_primer_p1>
		<pcr_primer_p2>AACAGTTATGGGATTTTGATAGA</pcr_primer_p2>
		<pcr_amplicon_size>218</pcr_amplicon_size>
		<canonical_amplicon>CATCGGAAAACATAAAATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTATGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTT</canonical_amplicon>
		<polymorphic_amplicon>CATCGGAAAACATAAAATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCWATGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33752</snp_id>
        <super_contig>c008401483.Contig1</super_contig>
        <contig_pos>51227</contig_pos>
        <strand>+</strand>
        <context>GTTATAGTCW[A/T]TGAGATAMTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCT</left_flank>
        <right_flank>TGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATCAGCTTAAACGGACTATTTTGAGCCAAGTTACGACAGTTTGAAGGAAACTTTGAAAAATGCATAATAAGCCAAATTTACATTTGAAGTTTTTGAGTCTTGTTTTTTAACTGTTAAAAAATTAAAAGTTCTACAGTACCCCAAAAAGATTAACGAACTTATTTTTCTTCTCATCTGGACCTACAAAAGTCACAAGTCTTCTTCTTTCTCTTCTTTTTCTTCTCTGAAGATCATCAAAACCATTTCTGGGTCCATATCTTTGTGAATAACAAAAGAAAGGGGATGGTTCAAGTGATAGATCTTTGTGTTCTTTTTTTTTTTGGAGATCAAACCGACCATGTGTCGACAACGTGTCCTCCACCATCGGAAAACATAAAATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTATGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAACCTTTT</canonical>
            <polymorphic>AAAAATCAGCTTAAACGGACTATTTTGAGCCAAGTTACGACAGTTTGAAGGAAACTTTGAAAAATGCATAATAAGCCAAATTTACATTTGAAGTTTTTGAGTCTTGTTTTTTAACTGTTAAAAAATTAAAAGTTCTACAGTACCCCAAAAAGATTAACGAACTTATTTTTCTTCTCATCTGGACCTACAAAAGTCACAAGTCTTCTTCTTTCTCTTCTTTTTCTTCTCTGAAGATCATCAAAACCATTTCTGGGTCCATATCTTTGTGAATAACAAAAGAAAGGGGATGGTTCAAGTGATAGATCTTTGTGTTCTTTTTTTTTTTGGAGATCAAACCGACCATGTGTCGACAACGTGTCCTCCACCATCGGAAAACATAAAATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTWTGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAACCTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCGGAAAACATAAAATATCAC</pcr_primer_p1>
		<pcr_primer_p2>AACAGTTATGGGATTTTGATAGA</pcr_primer_p2>
		<pcr_amplicon_size>218</pcr_amplicon_size>
		<canonical_amplicon>CATCGGAAAACATAAAATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTATGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTT</canonical_amplicon>
		<polymorphic_amplicon>CATCGGAAAACATAAAATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTWTGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33753</snp_id>
        <super_contig>c008401483.Contig1</super_contig>
        <contig_pos>51235</contig_pos>
        <strand>+</strand>
        <context>CWWTGAGATA[A/C]TGCAGTTGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTATGAGATA</left_flank>
        <right_flank>TGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTTAAACGGACTATTTTGAGCCAAGTTACGACAGTTTGAAGGAAACTTTGAAAAATGCATAATAAGCCAAATTTACATTTGAAGTTTTTGAGTCTTGTTTTTTAACTGTTAAAAAATTAAAAGTTCTACAGTACCCCAAAAAGATTAACGAACTTATTTTTCTTCTCATCTGGACCTACAAAAGTCACAAGTCTTCTTCTTTCTCTTCTTTTTCTTCTCTGAAGATCATCAAAACCATTTCTGGGTCCATATCTTTGTGAATAACAAAAGAAAGGGGATGGTTCAAGTGATAGATCTTTGTGTTCTTTTTTTTTTTGGAGATCAAACCGACCATGTGTCGACAACGTGTCCTCCACCATCGGAAAACATAAAATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTATGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAACCTTTTTGACAATT</canonical>
            <polymorphic>GCTTAAACGGACTATTTTGAGCCAAGTTACGACAGTTTGAAGGAAACTTTGAAAAATGCATAATAAGCCAAATTTACATTTGAAGTTTTTGAGTCTTGTTTTTTAACTGTTAAAAAATTAAAAGTTCTACAGTACCCCAAAAAGATTAACGAACTTATTTTTCTTCTCATCTGGACCTACAAAAGTCACAAGTCTTCTTCTTTCTCTTCTTTTTCTTCTCTGAAGATCATCAAAACCATTTCTGGGTCCATATCTTTGTGAATAACAAAAGAAAGGGGATGGTTCAAGTGATAGATCTTTGTGTTCTTTTTTTTTTTGGAGATCAAACCGACCATGTGTCGACAACGTGTCCTCCACCATCGGAAAACATAAAATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTATGAGATAMTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAACCTTTTTGACAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>373 334 166 127</canonical_bands>
                <polymorphic_bands>707 166 127</polymorphic_bands>
            </assay>
            <assay>
                <site>CTGCAG</site>
                <isoschizomers>
                    <enzyme>BloHII</enzyme>
                    <enzyme>BstMAI</enzyme>
                    <enzyme>PstI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATCGGAAAACATAAAATATCAC</pcr_primer_p1>
		<pcr_primer_p2>AACAGTTATGGGATTTTGATAGA</pcr_primer_p2>
		<pcr_amplicon_size>218</pcr_amplicon_size>
		<canonical_amplicon>CATCGGAAAACATAAAATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTATGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTT</canonical_amplicon>
		<polymorphic_amplicon>CATCGGAAAACATAAAATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTATGAGATAMTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33754</snp_id>
        <super_contig>c008401483.Contig1</super_contig>
        <contig_pos>51260</contig_pos>
        <strand>+</strand>
        <context>TTGGGATACT[C/G]TAGTTATTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TACCGTAGTTATAGTCTATGAGATACTGCAGTTGTAGTAGTTGGGATACT</left_flank>
        <right_flank>TAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTACGACAGTTTGAAGGAAACTTTGAAAAATGCATAATAAGCCAAATTTACATTTGAAGTTTTTGAGTCTTGTTTTTTAACTGTTAAAAAATTAAAAGTTCTACAGTACCCCAAAAAGATTAACGAACTTATTTTTCTTCTCATCTGGACCTACAAAAGTCACAAGTCTTCTTCTTTCTCTTCTTTTTCTTCTCTGAAGATCATCAAAACCATTTCTGGGTCCATATCTTTGTGAATAACAAAAGAAAGGGGATGGTTCAAGTGATAGATCTTTGTGTTCTTTTTTTTTTTGGAGATCAAACCGACCATGTGTCGACAACGTGTCCTCCACCATCGGAAAACATAAAATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTATGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAACCTTTTTGACAATTTTGCGGTTAAAGGCGCATGATCCAA</canonical>
            <polymorphic>GTTACGACAGTTTGAAGGAAACTTTGAAAAATGCATAATAAGCCAAATTTACATTTGAAGTTTTTGAGTCTTGTTTTTTAACTGTTAAAAAATTAAAAGTTCTACAGTACCCCAAAAAGATTAACGAACTTATTTTTCTTCTCATCTGGACCTACAAAAGTCACAAGTCTTCTTCTTTCTCTTCTTTTTCTTCTCTGAAGATCATCAAAACCATTTCTGGGTCCATATCTTTGTGAATAACAAAAGAAAGGGGATGGTTCAAGTGATAGATCTTTGTGTTCTTTTTTTTTTTGGAGATCAAACCGACCATGTGTCGACAACGTGTCCTCCACCATCGGAAAACATAAAATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTATGAGATACTGCAGTTGTAGTAGTTGGGATACTSTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAACCTTTTTGACAATTTTGCGGTTAAAGGCGCATGATCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>408 302 198 92</canonical_bands>
                <polymorphic_bands>408 302 290</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGACGGTTTTGAGGATCA</pcr_primer_p1>
		<pcr_primer_p2>GTTACTGTAAATGCTTAGATAGAACC</pcr_primer_p2>
		<pcr_amplicon_size>555</pcr_amplicon_size>
		<canonical_amplicon>CTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTATGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAAC</canonical_amplicon>
		<polymorphic_amplicon>CTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTATGAGATACTGCAGTTGTAGTAGTTGGGATACTSTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33755</snp_id>
        <super_contig>c008401483.Contig1</super_contig>
        <contig_pos>51314</contig_pos>
        <strand>+</strand>
        <context>AACTGTTTTG[A/G]AAAAATATGR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTG</left_flank>
        <right_flank>AAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAGTTTTTGAGTCTTGTTTTTTAACTGTTAAAAAATTAAAAGTTCTACAGTACCCCAAAAAGATTAACGAACTTATTTTTCTTCTCATCTGGACCTACAAAAGTCACAAGTCTTCTTCTTTCTCTTCTTTTTCTTCTCTGAAGATCATCAAAACCATTTCTGGGTCCATATCTTTGTGAATAACAAAAGAAAGGGGATGGTTCAAGTGATAGATCTTTGTGTTCTTTTTTTTTTTGGAGATCAAACCGACCATGTGTCGACAACGTGTCCTCCACCATCGGAAAACATAAAATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTATGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAACCTTTTTGACAATTTTGCGGTTAAAGGCGCATGATCCAAAAATTAACTAGATCAATATTATACTCATTTTGAAGAGCCTTTTTTTTGCCAAAG</canonical>
            <polymorphic>TTGAAGTTTTTGAGTCTTGTTTTTTAACTGTTAAAAAATTAAAAGTTCTACAGTACCCCAAAAAGATTAACGAACTTATTTTTCTTCTCATCTGGACCTACAAAAGTCACAAGTCTTCTTCTTTCTCTTCTTTTTCTTCTCTGAAGATCATCAAAACCATTTCTGGGTCCATATCTTTGTGAATAACAAAAGAAAGGGGATGGTTCAAGTGATAGATCTTTGTGTTCTTTTTTTTTTTGGAGATCAAACCGACCATGTGTCGACAACGTGTCCTCCACCATCGGAAAACATAAAATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTATGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGRAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAACCTTTTTGACAATTTTGCGGTTAAAGGCGCATGATCCAAAAATTAACTAGATCAATATTATACTCATTTTGAAGAGCCTTTTTTTTGCCAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGTTGTAGTAGTTGGGATACT</pcr_primer_p1>
		<pcr_primer_p2>GTTACTGTAAATGCTTAGATAGAACC</pcr_primer_p2>
		<pcr_amplicon_size>486</pcr_amplicon_size>
		<canonical_amplicon>GCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAAC</canonical_amplicon>
		<polymorphic_amplicon>GCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGRAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33756</snp_id>
        <super_contig>c008401483.Contig1</super_contig>
        <contig_pos>51324</contig_pos>
        <strand>+</strand>
        <context>RAAAAATATG[A/G]GTTTTTACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATG</left_flank>
        <right_flank>GTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGTCTTGTTTTTTAACTGTTAAAAAATTAAAAGTTCTACAGTACCCCAAAAAGATTAACGAACTTATTTTTCTTCTCATCTGGACCTACAAAAGTCACAAGTCTTCTTCTTTCTCTTCTTTTTCTTCTCTGAAGATCATCAAAACCATTTCTGGGTCCATATCTTTGTGAATAACAAAAGAAAGGGGATGGTTCAAGTGATAGATCTTTGTGTTCTTTTTTTTTTTGGAGATCAAACCGACCATGTGTCGACAACGTGTCCTCCACCATCGGAAAACATAAAATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTATGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAACCTTTTTGACAATTTTGCGGTTAAAGGCGCATGATCCAAAAATTAACTAGATCAATATTATACTCATTTTGAAGAGCCTTTTTTTTGCCAAAGACGATGAAAT</canonical>
            <polymorphic>TGAGTCTTGTTTTTTAACTGTTAAAAAATTAAAAGTTCTACAGTACCCCAAAAAGATTAACGAACTTATTTTTCTTCTCATCTGGACCTACAAAAGTCACAAGTCTTCTTCTTTCTCTTCTTTTTCTTCTCTGAAGATCATCAAAACCATTTCTGGGTCCATATCTTTGTGAATAACAAAAGAAAGGGGATGGTTCAAGTGATAGATCTTTGTGTTCTTTTTTTTTTTGGAGATCAAACCGACCATGTGTCGACAACGTGTCCTCCACCATCGGAAAACATAAAATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTATGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATGRGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAACCTTTTTGACAATTTTGCGGTTAAAGGCGCATGATCCAAAAATTAACTAGATCAATATTATACTCATTTTGAAGAGCCTTTTTTTTGCCAAAGACGATGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGTTGTAGTAGTTGGGATACT</pcr_primer_p1>
		<pcr_primer_p2>GTTACTGTAAATGCTTAGATAGAACC</pcr_primer_p2>
		<pcr_amplicon_size>486</pcr_amplicon_size>
		<canonical_amplicon>GCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAAC</canonical_amplicon>
		<polymorphic_amplicon>GCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATGRGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33757</snp_id>
        <super_contig>c008401483.Contig1</super_contig>
        <contig_pos>51339</contig_pos>
        <strand>+</strand>
        <context>TTACAACTTT[G/T]AAYAAAAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTT</left_flank>
        <right_flank>AACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTGTTAAAAAATTAAAAGTTCTACAGTACCCCAAAAAGATTAACGAACTTATTTTTCTTCTCATCTGGACCTACAAAAGTCACAAGTCTTCTTCTTTCTCTTCTTTTTCTTCTCTGAAGATCATCAAAACCATTTCTGGGTCCATATCTTTGTGAATAACAAAAGAAAGGGGATGGTTCAAGTGATAGATCTTTGTGTTCTTTTTTTTTTTGGAGATCAAACCGACCATGTGTCGACAACGTGTCCTCCACCATCGGAAAACATAAAATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTATGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAACCTTTTTGACAATTTTGCGGTTAAAGGCGCATGATCCAAAAATTAACTAGATCAATATTATACTCATTTTGAAGAGCCTTTTTTTTGCCAAAGACGATGAAATGTTCAAATTTCAATT</canonical>
            <polymorphic>AACTGTTAAAAAATTAAAAGTTCTACAGTACCCCAAAAAGATTAACGAACTTATTTTTCTTCTCATCTGGACCTACAAAAGTCACAAGTCTTCTTCTTTCTCTTCTTTTTCTTCTCTGAAGATCATCAAAACCATTTCTGGGTCCATATCTTTGTGAATAACAAAAGAAAGGGGATGGTTCAAGTGATAGATCTTTGTGTTCTTTTTTTTTTTGGAGATCAAACCGACCATGTGTCGACAACGTGTCCTCCACCATCGGAAAACATAAAATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTATGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTKAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAACCTTTTTGACAATTTTGCGGTTAAAGGCGCATGATCCAAAAATTAACTAGATCAATATTATACTCATTTTGAAGAGCCTTTTTTTTGCCAAAGACGATGAAATGTTCAAATTTCAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCTATCAAAATCCCATAACTGT</pcr_primer_p1>
		<pcr_primer_p2>GTTACTGTAAATGCTTAGATAGAACC</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>AGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAAC</canonical_amplicon>
		<polymorphic_amplicon>AGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTKAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33758</snp_id>
        <super_contig>c008401483.Contig1</super_contig>
        <contig_pos>51342</contig_pos>
        <strand>+</strand>
        <context>CAACTTTKAA[C/T]AAAAACAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAA</left_flank>
        <right_flank>AAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTAAAAAATTAAAAGTTCTACAGTACCCCAAAAAGATTAACGAACTTATTTTTCTTCTCATCTGGACCTACAAAAGTCACAAGTCTTCTTCTTTCTCTTCTTTTTCTTCTCTGAAGATCATCAAAACCATTTCTGGGTCCATATCTTTGTGAATAACAAAAGAAAGGGGATGGTTCAAGTGATAGATCTTTGTGTTCTTTTTTTTTTTGGAGATCAAACCGACCATGTGTCGACAACGTGTCCTCCACCATCGGAAAACATAAAATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTATGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAACCTTTTTGACAATTTTGCGGTTAAAGGCGCATGATCCAAAAATTAACTAGATCAATATTATACTCATTTTGAAGAGCCTTTTTTTTGCCAAAGACGATGAAATGTTCAAATTTCAATTCAT</canonical>
            <polymorphic>TGTTAAAAAATTAAAAGTTCTACAGTACCCCAAAAAGATTAACGAACTTATTTTTCTTCTCATCTGGACCTACAAAAGTCACAAGTCTTCTTCTTTCTCTTCTTTTTCTTCTCTGAAGATCATCAAAACCATTTCTGGGTCCATATCTTTGTGAATAACAAAAGAAAGGGGATGGTTCAAGTGATAGATCTTTGTGTTCTTTTTTTTTTTGGAGATCAAACCGACCATGTGTCGACAACGTGTCCTCCACCATCGGAAAACATAAAATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTATGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAAYAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAACCTTTTTGACAATTTTGCGGTTAAAGGCGCATGATCCAAAAATTAACTAGATCAATATTATACTCATTTTGAAGAGCCTTTTTTTTGCCAAAGACGATGAAATGTTCAAATTTCAATTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATCAAAATCCCATAACTGTTT</pcr_primer_p1>
		<pcr_primer_p2>GTTACTGTAAATGCTTAGATAGAACC</pcr_primer_p2>
		<pcr_amplicon_size>434</pcr_amplicon_size>
		<canonical_amplicon>CTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAAC</canonical_amplicon>
		<polymorphic_amplicon>CTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAAYAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33759</snp_id>
        <super_contig>c008401483.Contig1</super_contig>
        <contig_pos>51355</contig_pos>
        <strand></strand>
        <context>AAACAAAAAA[C/A]GTGAAaaama</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAA</left_flank>
        <right_flank>GTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGTTCTACAGTACCCCAAAAAGATTAACGAACTTATTTTTCTTCTCATCTGGACCTACAAAAGTCACAAGTCTTCTTCTTTCTCTTCTTTTTCTTCTCTGAAGATCATCAAAACCATTTCTGGGTCCATATCTTTGTGAATAACAAAAGAAAGGGGATGGTTCAAGTGATAGATCTTTGTGTTCTTTTTTTTTTTGGAGATCAAACCGACCATGTGTCGACAACGTGTCCTCCACCATCGGAAAACATAAAATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTATGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAACCTTTTTGACAATTTTGCGGTTAAAGGCGCATGATCCAAAAATTAACTAGATCAATATTATACTCATTTTGAAGAGCCTTTTTTTTGCCAAAGACGATGAAATGTTCAAATTTCAATTCATTCGATTTTCATTC</canonical>
            <polymorphic>AAAGTTCTACAGTACCCCAAAAAGATTAACGAACTTATTTTTCTTCTCATCTGGACCTACAAAAGTCACAAGTCTTCTTCTTTCTCTTCTTTTTCTTCTCTGAAGATCATCAAAACCATTTCTGGGTCCATATCTTTGTGAATAACAAAAGAAAGGGGATGGTTCAAGTGATAGATCTTTGTGTTCTTTTTTTTTTTGGAGATCAAACCGACCATGTGTCGACAACGTGTCCTCCACCATCGGAAAACATAAAATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTATGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAAMGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAACCTTTTTGACAATTTTGCGGTTAAAGGCGCATGATCCAAAAATTAACTAGATCAATATTATACTCATTTTGAAGAGCCTTTTTTTTGCCAAAGACGATGAAATGTTCAAATTTCAATTCATTCGATTTTCATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>501 225 190 84</canonical_bands>
                <polymorphic_bands>691 225 84</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATCAAAATCCCATAACTGTTT</pcr_primer_p1>
		<pcr_primer_p2>GTTACTGTAAATGCTTAGATAGAACC</pcr_primer_p2>
		<pcr_amplicon_size>434</pcr_amplicon_size>
		<canonical_amplicon>CTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAAC</canonical_amplicon>
		<polymorphic_amplicon>CTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAAMGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33760</snp_id>
        <super_contig>c008401483.Contig1</super_contig>
        <contig_pos>51364</contig_pos>
        <strand>+</strand>
        <context>AMGTGAAaaa[A/C]agtaagcttt</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAA</left_flank>
        <right_flank>AGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTACCCCAAAAAGATTAACGAACTTATTTTTCTTCTCATCTGGACCTACAAAAGTCACAAGTCTTCTTCTTTCTCTTCTTTTTCTTCTCTGAAGATCATCAAAACCATTTCTGGGTCCATATCTTTGTGAATAACAAAAGAAAGGGGATGGTTCAAGTGATAGATCTTTGTGTTCTTTTTTTTTTTGGAGATCAAACCGACCATGTGTCGACAACGTGTCCTCCACCATCGGAAAACATAAAATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTATGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAACCTTTTTGACAATTTTGCGGTTAAAGGCGCATGATCCAAAAATTAACTAGATCAATATTATACTCATTTTGAAGAGCCTTTTTTTTGCCAAAGACGATGAAATGTTCAAATTTCAATTCATTCGATTTTCATTCAAGTTATAA</canonical>
            <polymorphic>CAGTACCCCAAAAAGATTAACGAACTTATTTTTCTTCTCATCTGGACCTACAAAAGTCACAAGTCTTCTTCTTTCTCTTCTTTTTCTTCTCTGAAGATCATCAAAACCATTTCTGGGTCCATATCTTTGTGAATAACAAAAGAAAGGGGATGGTTCAAGTGATAGATCTTTGTGTTCTTTTTTTTTTTGGAGATCAAACCGACCATGTGTCGACAACGTGTCCTCCACCATCGGAAAACATAAAATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTATGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAAMAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAACCTTTTTGACAATTTTGCGGTTAAAGGCGCATGATCCAAAAATTAACTAGATCAATATTATACTCATTTTGAAGAGCCTTTTTTTTGCCAAAGACGATGAAATGTTCAAATTTCAATTCATTCGATTTTCATTCAAGTTATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>310 208 147 144 62 58 39 32</canonical_bands>
                <polymorphic_bands>310 266 147 144 62 39 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATCAAAATCCCATAACTGTTT</pcr_primer_p1>
		<pcr_primer_p2>GTTACTGTAAATGCTTAGATAGAACC</pcr_primer_p2>
		<pcr_amplicon_size>434</pcr_amplicon_size>
		<canonical_amplicon>CTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAAC</canonical_amplicon>
		<polymorphic_amplicon>CTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAAMAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33761</snp_id>
        <super_contig>c008401483.Contig1</super_contig>
        <contig_pos>51458</contig_pos>
        <strand></strand>
        <context>cttcattttt[C/G]tagttgacaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTT</left_flank>
        <right_flank>TAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATCATCAAAACCATTTCTGGGTCCATATCTTTGTGAATAACAAAAGAAAGGGGATGGTTCAAGTGATAGATCTTTGTGTTCTTTTTTTTTTTGGAGATCAAACCGACCATGTGTCGACAACGTGTCCTCCACCATCGGAAAACATAAAATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTATGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAACCTTTTTGACAATTTTGCGGTTAAAGGCGCATGATCCAAAAATTAACTAGATCAATATTATACTCATTTTGAAGAGCCTTTTTTTTGCCAAAGACGATGAAATGTTCAAATTTCAATTCATTCGATTTTCATTCAAGTTATAACAATTTGAAGTTAAAGACCTAGAAAGTGTTGTTCCTACCACTCGAAACTATCTTGAACCTCAATTATCTCGGTTCCTAAAAAAGATATCAAAAA</canonical>
            <polymorphic>AGATCATCAAAACCATTTCTGGGTCCATATCTTTGTGAATAACAAAAGAAAGGGGATGGTTCAAGTGATAGATCTTTGTGTTCTTTTTTTTTTTGGAGATCAAACCGACCATGTGTCGACAACGTGTCCTCCACCATCGGAAAACATAAAATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTATGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTSTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAACCTTTTTGACAATTTTGCGGTTAAAGGCGCATGATCCAAAAATTAACTAGATCAATATTATACTCATTTTGAAGAGCCTTTTTTTTGCCAAAGACGATGAAATGTTCAAATTTCAATTCATTCGATTTTCATTCAAGTTATAACAATTTGAAGTTAAAGACCTAGAAAGTGTTGTTCCTACCACTCGAAACTATCTTGAACCTCAATTATCTCGGTTCCTAAAAAAGATATCAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>310 210 198 115 92 75</canonical_bands>
                <polymorphic_bands>508 210 115 92 75</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATCAAAATCCCATAACTGTTT</pcr_primer_p1>
		<pcr_primer_p2>GTTACTGTAAATGCTTAGATAGAACC</pcr_primer_p2>
		<pcr_amplicon_size>434</pcr_amplicon_size>
		<canonical_amplicon>CTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAAC</canonical_amplicon>
		<polymorphic_amplicon>CTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTSTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33762</snp_id>
        <super_contig>c008401483.Contig1</super_contig>
        <contig_pos>51608</contig_pos>
        <strand></strand>
        <context>tataaaatat[A/G]tgccatagta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATAT</left_flank>
        <right_flank>TGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTATGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAACCTTTTTGACAATTTTGCGGTTAAAGGCGCATGATCCAAAAATTAACTAGATCAATATTATACTCATTTTGAAGAGCCTTTTTTTTGCCAAAGACGATGAAATGTTCAAATTTCAATTCATTCGATTTTCATTCAAGTTATAACAATTTGAAGTTAAAGACCTAGAAAGTGTTGTTCCTACCACTCGAAACTATCTTGAACCTCAATTATCTCGGTTCCTAAAAAAGATATCAAAAAGTTAATAACTAACAAAATGTTTTTGATATCATGACAAGTAAATTATCAGTTGACAACTTTTTGATATCTGTTATAGAAGCCGAGATAATATGGCTCAAAGTTAAGAAGCCCTTCTATTAGAGGTATCCACTGCTCCTCTCTTTGTCTAGA</canonical>
            <polymorphic>ATATCACAGCGTCTTGCAGATTTTAGAAGTCATAAGGCCTGCTGGGATTCAGAGAACGTCTAGACGGTTTTGAGGATCAAACTTTTTTGATCTCTTAAGGATACCGTAGTTATAGTCTATGAGATACTGCAGTTGTAGTAGTTGGGATACTCTAGTTATTAAGTACTGTTAATTTTGAGTCTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATRTGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAACCTTTTTGACAATTTTGCGGTTAAAGGCGCATGATCCAAAAATTAACTAGATCAATATTATACTCATTTTGAAGAGCCTTTTTTTTGCCAAAGACGATGAAATGTTCAAATTTCAATTCATTCGATTTTCATTCAAGTTATAACAATTTGAAGTTAAAGACCTAGAAAGTGTTGTTCCTACCACTCGAAACTATCTTGAACCTCAATTATCTCGGTTCCTAAAAAAGATATCAAAAAGTTAATAACTAACAAAATGTTTTTGATATCATGACAAGTAAATTATCAGTTGACAACTTTTTGATATCTGTTATAGAAGCCGAGATAATATGGCTCAAAGTTAAGAAGCCCTTCTATTAGAGGTATCCACTGCTCCTCTCTTTGTCTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATCAAAATCCCATAACTGTTT</pcr_primer_p1>
		<pcr_primer_p2>GTTACTGTAAATGCTTAGATAGAACC</pcr_primer_p2>
		<pcr_amplicon_size>434</pcr_amplicon_size>
		<canonical_amplicon>CTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATATGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAAC</canonical_amplicon>
		<polymorphic_amplicon>CTATCAAAATCCCATAACTGTTTTGAAAAAATATGAGTTTTTACAACTTTGAACAAAAACAAAAAACGTGAAAAACAGTAAGCTTTGAAGTCTTACAAAAGTGTTTCAAGATTTTTCAACTTGGCTGAAAATTACAGAAAATACTGAACAAAATCAGAGCTTCATTTTTCTAGTTGACAACTTTTTAGTCGCTATTTTGGTTTTTGGGATATGCGCCTTTAAAGGCTGAGTGTCTCGCCTCTCTCAGATATCCTGACTTTAAAGACGCATAGCTCAAAAACTACAGTAGTCACAAAAAAGTTGCTAACTTATAAAATATRTGCCATAGTATCAGCAACATTTTATCAGTTGACCACTTTTTAATATCTTTTAAGGAATTGAGATAATTGGGCTCAAAGTATGGGACGGGGTTCTATCTAAGCATTTACAGTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33763</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>13222</contig_pos>
        <strand></strand>
        <context>gataaaattt[C/T]tgtcataata</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACCTCAATCGCTATAAGAGATAACAGAAATCTGTCAACTGATAAAATTT</left_flank>
        <right_flank>TGTCATAATATCACCAATATTTTATTTGCTGGCAACATTTTTGATATTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCAAGTTGCCAAAGAACCTAGATTCATCTGTCTCGTTGGTGCCCAATTTTTCCGAATTCTTCGATTCATGGCAAATGAAAACTTCTTGATTGTTTTCACCGAGAGTCTTCTAGTCAATAATGGATTCTTCGAGAAAAATTCCGGAACTTTGGGACTCTTTTATATTCTTGCGAGATCTTGTGGAAGCGTAAGTCTGGGCTGGTTTGGAGTTCAAAATGAATAAATATTTTCAGATTCTGTTCCTTGTACTATGGGCACCAACCAATCGTTTTGGAACTCAAGCAGTCATTCAATCTCTGAATATTTTATCAATTTTCATTGTGATTTTTGTATTGTATGCTGGAATGGATAATATCACAGCCGTCGCAATTTTCATTATTTTGGAAAAGTAAGTTACCGTAAAACTCTCTAATAGAAGGCCGCCCTATACTAGCACTTTGAACTCATTTACCTCAATCGCTATAAGAGATAACAGAAATCTGTCAACTGATAAAATTTCTGTCATAATATCACCAATATTTTATTTGCTGGCAACATTTTTGATATTTCTTCTAGGAGCCGAGATCATTGAGCTCAAATTTGACAGTGTAAGGGTCCTTCTGGAACAGGTTTTACGGTTACTGTGAACTTCACCAAATATGGATATACTGATTTTTCAGTGCAATTTCCCGCTGTGGATGGCAAGGATTCTATATTGTGGTTGCTGGAGAAGTCGTTGACACTGATATGAAACAGAATAACAGGAAGTGAGTTCACATCCAAAACCTGCTACATAATTGAGCCTCTACTTTTTTTCAGAACTCCCTTCTCCACAATCATCTTCACTCTGAAAGCTCTTTTCAACAAACCAGCAGATCAATTAGCACCAGTTCTTGTCCTTTCGCTTTTCTTGGAACAAGGGGGTTATCCACAATTAACAGTTCCATGCCAAAATTTCTACGAAGATACCTTCTCAAACTCTACTTTACCCTTCAATTCTACTTCAATCGAGACTACAAC</canonical>
            <polymorphic>GGCAAGTTGCCAAAGAACCTAGATTCATCTGTCTCGTTGGTGCCCAATTTTTCCGAATTCTTCGATTCATGGCAAATGAAAACTTCTTGATTGTTTTCACCGAGAGTCTTCTAGTCAATAATGGATTCTTCGAGAAAAATTCCGGAACTTTGGGACTCTTTTATATTCTTGCGAGATCTTGTGGAAGCGTAAGTCTGGGCTGGTTTGGAGTTCAAAATGAATAAATATTTTCAGATTCTGTTCCTTGTACTATGGGCACCAACCAATCGTTTTGGAACTCAAGCAGTCATTCAATCTCTGAATATTTTATCAATTTTCATTGTGATTTTTGTATTGTATGCTGGAATGGATAATATCACAGCCGTCGCAATTTTCATTATTTTGGAAAAGTAAGTTACCGTAAAACTCTCTAATAGAAGGCCGCCCTATACTAGCACTTTGAACTCATTTACCTCAATCGCTATAAGAGATAACAGAAATCTGTCAACTGATAAAATTTYTGTCATAATATCACCAATATTTTATTTGCTGGCAACATTTTTGATATTTCTTCTAGGAGCCGAGATCATTGAGCTCAAATTTGACAGTGTAAGGGTCCTTCTGGAACAGGTTTTACGGTTACTGTGAACTTCACCAAATATGGATATACTGATTTTTCAGTGCAATTTCCCGCTGTGGATGGCAAGGATTCTATATTGTGGTTGCTGGAGAAGTCGTTGACACTGATATGAAACAGAATAACAGGAAGTGAGTTCACATCCAAAACCTGCTACATAATTGAGCCTCTACTTTTTTTCAGAACTCCCTTCTCCACAATCATCTTCACTCTGAAAGCTCTTTTCAACAAACCAGCAGATCAATTAGCACCAGTTCTTGTCCTTTCGCTTTTCTTGGAACAAGGGGGTTATCCACAATTAACAGTTCCATGCCAAAATTTCTACGAAGATACCTTCTCAAACTCTACTTTACCCTTCAATTCTACTTCAATCGAGACTACAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCGCAATTTTCATTATTTTG</pcr_primer_p1>
		<pcr_primer_p2>TCAGTATATCCATATTTGGTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>GTCGCAATTTTCATTATTTTGGAAAAGTAAGTTACCGTAAAACTCTCTAATAGAAGGCCGCCCTATACTAGCACTTTGAACTCATTTACCTCAATCGCTATAAGAGATAACAGAAATCTGTCAACTGATAAAATTTCTGTCATAATATCACCAATATTTTATTTGCTGGCAACATTTTTGATATTTCTTCTAGGAGCCGAGATCATTGAGCTCAAATTTGACAGTGTAAGGGTCCTTCTGGAACAGGTTTTACGGTTACTGTGAACTTCACCAAATATGGATATACTGA</canonical_amplicon>
		<polymorphic_amplicon>GTCGCAATTTTCATTATTTTGGAAAAGTAAGTTACCGTAAAACTCTCTAATAGAAGGCCGCCCTATACTAGCACTTTGAACTCATTTACCTCAATCGCTATAAGAGATAACAGAAATCTGTCAACTGATAAAATTTYTGTCATAATATCACCAATATTTTATTTGCTGGCAACATTTTTGATATTTCTTCTAGGAGCCGAGATCATTGAGCTCAAATTTGACAGTGTAAGGGTCCTTCTGGAACAGGTTTTACGGTTACTGTGAACTTCACCAAATATGGATATACTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33764</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>17870</contig_pos>
        <strand></strand>
        <context>ctgagttatc[G/C]cttgtcaaag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GTAAACTGACCAAGTTTCAAATTGTTTGATCAACTTTGAGCTGAGTTATC</left_flank>
        <right_flank>CTTGTCAAAGTTGCTACATCTCATAAAAATAACAAGAAGCATTACGCCGC</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTTAGTTCAACTGAGGACTGTTAGAGGGTTTAAAAATAAGAATTGCGTAAAAATAGAGATACAGTTCCGGTTTACCGTAATCTACAGTGTATTCTACCAGTCCCAGATGACGTTTCTGAAGAAAACAAAACGAAAATGCGGTGAGGCTAAAAAAGTGAGTATTCGAGAAGAGGATCAGCTGACCTTCGAGCGTTTTCAGCTGCTTCGCGGGTTGCTGATTCGAGAATTGATTGAAGATGGACTAGTTGTTCTCGCAGTGATAAGACTTCTGATTCTGCCGCGTATTTCTGAAGTTTTTGAACTTTGAGCAAGATTCTTGAAGTGCCTTTCTTTGTTATACAGGGTCTCGCATGATTACCAGGACTCAAGTTTGTACTGCTATAAAACTTGAGTAGAGTGTTGTACTGAGCTCAAATTTGAAATGCAAAAACTCAAAAAATTTATCAGTAAACTGACCAAGTTTCAAATTGTTTGATCAACTTTGAGCTGAGTTATCGCTTGTCAAAGTTGCTACATCTCATAAAAATAACAAGAAGCATTACGCCGCTCATGTTTGAATATAACAAAGCGAGACTTGAGGAACCGCTTTGGAAATTTCAGTAGCTTTGATTCAGGCGTAAAATTATATTTCTACTAATTTTCGTGCTTCCAAGATACTTGTGTCTAAAGATATGCCAGCTTTTATCAAAATTGCGCCACCCAATCATAGAATGACCGCAGAACTTTGGGTCCATATATCTCATTTCCTGTGAAAGATATCAAAAAGCGGTCAACTGACAAAATATTTTTGATATTATGATAAAACGTTTATCATTTTACTTCTTTTTCATATCTTTCACGAGATTTATGGGCTCAAAGTGGACGGTTTGAATGTCATTCTATTAAAGCTAACGTAGACTTTCCTAGACTTGATGAGTAGTTTTGAAAATTTCGTAAAATTATTTTTCTACCAATTTTCGTGCTTCCAAGATACTTATGTCTAAAAATATACCTGTTT</canonical>
            <polymorphic>TGTTTTAGTTCAACTGAGGACTGTTAGAGGGTTTAAAAATAAGAATTGCGTAAAAATAGAGATACAGTTCCGGTTTACCGTAATCTACAGTGTATTCTACCAGTCCCAGATGACGTTTCTGAAGAAAACAAAACGAAAATGCGGTGAGGCTAAAAAAGTGAGTATTCGAGAAGAGGATCAGCTGACCTTCGAGCGTTTTCAGCTGCTTCGCGGGTTGCTGATTCGAGAATTGATTGAAGATGGACTAGTTGTTCTCGCAGTGATAAGACTTCTGATTCTGCCGCGTATTTCTGAAGTTTTTGAACTTTGAGCAAGATTCTTGAAGTGCCTTTCTTTGTTATACAGGGTCTCGCATGATTACCAGGACTCAAGTTTGTACTGCTATAAAACTTGAGTAGAGTGTTGTACTGAGCTCAAATTTGAAATGCAAAAACTCAAAAAATTTATCAGTAAACTGACCAAGTTTCAAATTGTTTGATCAACTTTGAGCTGAGTTATCSCTTGTCAAAGTTGCTACATCTCATAAAAATAACAAGAAGCATTACGCCGCTCATGTTTGAATATAACAAAGCGAGACTTGAGGAACCGCTTTGGAAATTTCAGTAGCTTTGATTCAGGCGTAAAATTATATTTCTACTAATTTTCGTGCTTCCAAGATACTTGTGTCTAAAGATATGCCAGCTTTTATCAAAATTGCGCCACCCAATCATAGAATGACCGCAGAACTTTGGGTCCATATATCTCATTTCCTGTGAAAGATATCAAAAAGCGGTCAACTGACAAAATATTTTTGATATTATGATAAAACGTTTATCATTTTACTTCTTTTTCATATCTTTCACGAGATTTATGGGCTCAAAGTGGACGGTTTGAATGTCATTCTATTAAAGCTAACGTAGACTTTCCTAGACTTGATGAGTAGTTTTGAAAATTTCGTAAAATTATTTTTCTACCAATTTTCGTGCTTCCAAGATACTTATGTCTAAAAATATACCTGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTTCTTTGTTATACAGGGTCT</pcr_primer_p1>
		<pcr_primer_p2>AGGATTGGGATAAAGTTGTAAGT</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>CCTTTCTTTGTTATACAGGGTCTCGCATGATTACCAGGACTCAAGTTTGTACTGCTATAAAACTTGAGTAGAGTGTTGTACTGAGCTCAAATTTGAAATGCAAAAACTCAAAAAATTTATCAGTAAACTGACCAAGTTTCAAATTGTTTGATCAACTTTGAGCTGAGTTATCGCTTGTCAAAGTTGCTACATCTC</canonical_amplicon>
		<polymorphic_amplicon>CCTTTCTTTGTTATACAGGGTCTCGCATGATTACCAGGACTCAAGTTTGTACTGCTATAAAACTTGAGTAGAGTGTTGTACTGAGCTCAAATTTGAAATGCAAAAACTCAAAAAATTTATCAGTAAACTGACCAAGTTTCAAATTGTTTGATCAACTTTGAGCTGAGTTATCSCTTGTCAAAGTTGCTACATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33765</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>17977</contig_pos>
        <strand></strand>
        <context>atttcagtag[C/T]tttgawtcag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGAATATAACAAAGCGAGACTTGAGGAACCGCTTTGGAAATTTCAGTAG</left_flank>
        <right_flank>TTTGATTCAGGCGTAAAATTATATTTCTACTAATTTTCGTGCTTCCAAGA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATGACGTTTCTGAAGAAAACAAAACGAAAATGCGGTGAGGCTAAAAAAGTGAGTATTCGAGAAGAGGATCAGCTGACCTTCGAGCGTTTTCAGCTGCTTCGCGGGTTGCTGATTCGAGAATTGATTGAAGATGGACTAGTTGTTCTCGCAGTGATAAGACTTCTGATTCTGCCGCGTATTTCTGAAGTTTTTGAACTTTGAGCAAGATTCTTGAAGTGCCTTTCTTTGTTATACAGGGTCTCGCATGATTACCAGGACTCAAGTTTGTACTGCTATAAAACTTGAGTAGAGTGTTGTACTGAGCTCAAATTTGAAATGCAAAAACTCAAAAAATTTATCAGTAAACTGACCAAGTTTCAAATTGTTTGATCAACTTTGAGCTGAGTTATCGCTTGTCAAAGTTGCTACATCTCATAAAAATAACAAGAAGCATTACGCCGCTCATGTTTGAATATAACAAAGCGAGACTTGAGGAACCGCTTTGGAAATTTCAGTAGCTTTGATTCAGGCGTAAAATTATATTTCTACTAATTTTCGTGCTTCCAAGATACTTGTGTCTAAAGATATGCCAGCTTTTATCAAAATTGCGCCACCCAATCATAGAATGACCGCAGAACTTTGGGTCCATATATCTCATTTCCTGTGAAAGATATCAAAAAGCGGTCAACTGACAAAATATTTTTGATATTATGATAAAACGTTTATCATTTTACTTCTTTTTCATATCTTTCACGAGATTTATGGGCTCAAAGTGGACGGTTTGAATGTCATTCTATTAAAGCTAACGTAGACTTTCCTAGACTTGATGAGTAGTTTTGAAAATTTCGTAAAATTATTTTTCTACCAATTTTCGTGCTTCCAAGATACTTATGTCTAAAAATATACCTGTTTTCATAAGTCTGGGAATTACTTACAACTTTATCCCAATCCTGCTGTTTCTCTTTCAATTCTTTCGCCCAATTCTCATTGACACAAGTGAGCTCCTCATCGACATGTGC</canonical>
            <polymorphic>AGATGACGTTTCTGAAGAAAACAAAACGAAAATGCGGTGAGGCTAAAAAAGTGAGTATTCGAGAAGAGGATCAGCTGACCTTCGAGCGTTTTCAGCTGCTTCGCGGGTTGCTGATTCGAGAATTGATTGAAGATGGACTAGTTGTTCTCGCAGTGATAAGACTTCTGATTCTGCCGCGTATTTCTGAAGTTTTTGAACTTTGAGCAAGATTCTTGAAGTGCCTTTCTTTGTTATACAGGGTCTCGCATGATTACCAGGACTCAAGTTTGTACTGCTATAAAACTTGAGTAGAGTGTTGTACTGAGCTCAAATTTGAAATGCAAAAACTCAAAAAATTTATCAGTAAACTGACCAAGTTTCAAATTGTTTGATCAACTTTGAGCTGAGTTATCGCTTGTCAAAGTTGCTACATCTCATAAAAATAACAAGAAGCATTACGCCGCTCATGTTTGAATATAACAAAGCGAGACTTGAGGAACCGCTTTGGAAATTTCAGTAGYTTTGATTCAGGCGTAAAATTATATTTCTACTAATTTTCGTGCTTCCAAGATACTTGTGTCTAAAGATATGCCAGCTTTTATCAAAATTGCGCCACCCAATCATAGAATGACCGCAGAACTTTGGGTCCATATATCTCATTTCCTGTGAAAGATATCAAAAAGCGGTCAACTGACAAAATATTTTTGATATTATGATAAAACGTTTATCATTTTACTTCTTTTTCATATCTTTCACGAGATTTATGGGCTCAAAGTGGACGGTTTGAATGTCATTCTATTAAAGCTAACGTAGACTTTCCTAGACTTGATGAGTAGTTTTGAAAATTTCGTAAAATTATTTTTCTACCAATTTTCGTGCTTCCAAGATACTTATGTCTAAAAATATACCTGTTTTCATAAGTCTGGGAATTACTTACAACTTTATCCCAATCCTGCTGTTTCTCTTTCAATTCTTTCGCCCAATTCTCATTGACACAAGTGAGCTCCTCATCGACATGTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>210 209 199 117 77 75 74 21 18</canonical_bands>
                <polymorphic_bands>210 209 199 192 77 74 21 18</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>210 199 173 117 77 75 42 36 32 21 18</canonical_bands>
                <polymorphic_bands>210 199 192 173 77 42 36 32 21 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTTCTTTGTTATACAGGGTCT</pcr_primer_p1>
		<pcr_primer_p2>AGGATTGGGATAAAGTTGTAAGT</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>CCTTTCTTTGTTATACAGGGTCTCGCATGATTACCAGGACTCAAGTTTGTACTGCTATAAAACTTGAGTAGAGTGTTGTACTGAGCTCAAATTTGAAATGCAAAAACTCAAAAAATTTATCAGTAAACTGACCAAGTTTCAAATTGTTTGATCAACTTTGAGCTGAGTTATCGCTTGTCAAAGTTGCTACATCTCATAAAAATAACAAGAAGCATTACGCCGCTCATGTTTGAATATAACAAAGCGAGACTTGAGGAACCGCTTTGGAAATTTCAGTAGCTTTGATTCAGGCGTAAAATTATATTTCTACTAATTTTCGTGCTTCCAAGATACTTGTGTCTAAAGATATGCCAGCTTTTATCAAAATTGCGCCACCCAATCATAGAATGACCGCAGAACTTTGGGTCCATATATCTCATTTCCTGTGAAAGATATCAAAAAGCGGTCAACTGACAAAATATTTTTGATATTATGATAAAACGTTTATCATTTTACTTCTTTTTCATATCTTTCACGAGATTTATGGGCTCAAAGTGGACGGTTTGAATGTCATTCTATTAAAGCTAACGTAGACTTTCCTAGACTTGATGAGTAGTTTTGAAAATTTCGTAAAATTATTTTTCTACCAATTTTCGTGCTTCCAAGATACTTATGTCTAAAAATATACCTGTTTTCATAAGTCTGGGAATTACTTACAACTTTATCCCAATCCT</canonical_amplicon>
		<polymorphic_amplicon>CCTTTCTTTGTTATACAGGGTCTCGCATGATTACCAGGACTCAAGTTTGTACTGCTATAAAACTTGAGTAGAGTGTTGTACTGAGCTCAAATTTGAAATGCAAAAACTCAAAAAATTTATCAGTAAACTGACCAAGTTTCAAATTGTTTGATCAACTTTGAGCTGAGTTATCGCTTGTCAAAGTTGCTACATCTCATAAAAATAACAAGAAGCATTACGCCGCTCATGTTTGAATATAACAAAGCGAGACTTGAGGAACCGCTTTGGAAATTTCAGTAGYTTTGATTCAGGCGTAAAATTATATTTCTACTAATTTTCGTGCTTCCAAGATACTTGTGTCTAAAGATATGCCAGCTTTTATCAAAATTGCGCCACCCAATCATAGAATGACCGCAGAACTTTGGGTCCATATATCTCATTTCCTGTGAAAGATATCAAAAAGCGGTCAACTGACAAAATATTTTTGATATTATGATAAAACGTTTATCATTTTACTTCTTTTTCATATCTTTCACGAGATTTATGGGCTCAAAGTGGACGGTTTGAATGTCATTCTATTAAAGCTAACGTAGACTTTCCTAGACTTGATGAGTAGTTTTGAAAATTTCGTAAAATTATTTTTCTACCAATTTTCGTGCTTCCAAGATACTTATGTCTAAAAATATACCTGTTTTCATAAGTCTGGGAATTACTTACAACTTTATCCCAATCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33766</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>17983</contig_pos>
        <strand></strand>
        <context>gtagytttga[T/A]tcaggcgtaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATAACAAAGCGAGACTTGAGGAACCGCTTTGGAAATTTCAGTAGCTTTGA</left_flank>
        <right_flank>TCAGGCGTAAAATTATATTTCTACTAATTTTCGTGCTTCCAAGATACTTG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTTCTGAAGAAAACAAAACGAAAATGCGGTGAGGCTAAAAAAGTGAGTATTCGAGAAGAGGATCAGCTGACCTTCGAGCGTTTTCAGCTGCTTCGCGGGTTGCTGATTCGAGAATTGATTGAAGATGGACTAGTTGTTCTCGCAGTGATAAGACTTCTGATTCTGCCGCGTATTTCTGAAGTTTTTGAACTTTGAGCAAGATTCTTGAAGTGCCTTTCTTTGTTATACAGGGTCTCGCATGATTACCAGGACTCAAGTTTGTACTGCTATAAAACTTGAGTAGAGTGTTGTACTGAGCTCAAATTTGAAATGCAAAAACTCAAAAAATTTATCAGTAAACTGACCAAGTTTCAAATTGTTTGATCAACTTTGAGCTGAGTTATCGCTTGTCAAAGTTGCTACATCTCATAAAAATAACAAGAAGCATTACGCCGCTCATGTTTGAATATAACAAAGCGAGACTTGAGGAACCGCTTTGGAAATTTCAGTAGCTTTGATTCAGGCGTAAAATTATATTTCTACTAATTTTCGTGCTTCCAAGATACTTGTGTCTAAAGATATGCCAGCTTTTATCAAAATTGCGCCACCCAATCATAGAATGACCGCAGAACTTTGGGTCCATATATCTCATTTCCTGTGAAAGATATCAAAAAGCGGTCAACTGACAAAATATTTTTGATATTATGATAAAACGTTTATCATTTTACTTCTTTTTCATATCTTTCACGAGATTTATGGGCTCAAAGTGGACGGTTTGAATGTCATTCTATTAAAGCTAACGTAGACTTTCCTAGACTTGATGAGTAGTTTTGAAAATTTCGTAAAATTATTTTTCTACCAATTTTCGTGCTTCCAAGATACTTATGTCTAAAAATATACCTGTTTTCATAAGTCTGGGAATTACTTACAACTTTATCCCAATCCTGCTGTTTCTCTTTCAATTCTTTCGCCCAATTCTCATTGACACAAGTGAGCTCCTCATCGACATGTGCAAATCG</canonical>
            <polymorphic>CGTTTCTGAAGAAAACAAAACGAAAATGCGGTGAGGCTAAAAAAGTGAGTATTCGAGAAGAGGATCAGCTGACCTTCGAGCGTTTTCAGCTGCTTCGCGGGTTGCTGATTCGAGAATTGATTGAAGATGGACTAGTTGTTCTCGCAGTGATAAGACTTCTGATTCTGCCGCGTATTTCTGAAGTTTTTGAACTTTGAGCAAGATTCTTGAAGTGCCTTTCTTTGTTATACAGGGTCTCGCATGATTACCAGGACTCAAGTTTGTACTGCTATAAAACTTGAGTAGAGTGTTGTACTGAGCTCAAATTTGAAATGCAAAAACTCAAAAAATTTATCAGTAAACTGACCAAGTTTCAAATTGTTTGATCAACTTTGAGCTGAGTTATCGCTTGTCAAAGTTGCTACATCTCATAAAAATAACAAGAAGCATTACGCCGCTCATGTTTGAATATAACAAAGCGAGACTTGAGGAACCGCTTTGGAAATTTCAGTAGCTTTGAWTCAGGCGTAAAATTATATTTCTACTAATTTTCGTGCTTCCAAGATACTTGTGTCTAAAGATATGCCAGCTTTTATCAAAATTGCGCCACCCAATCATAGAATGACCGCAGAACTTTGGGTCCATATATCTCATTTCCTGTGAAAGATATCAAAAAGCGGTCAACTGACAAAATATTTTTGATATTATGATAAAACGTTTATCATTTTACTTCTTTTTCATATCTTTCACGAGATTTATGGGCTCAAAGTGGACGGTTTGAATGTCATTCTATTAAAGCTAACGTAGACTTTCCTAGACTTGATGAGTAGTTTTGAAAATTTCGTAAAATTATTTTTCTACCAATTTTCGTGCTTCCAAGATACTTATGTCTAAAAATATACCTGTTTTCATAAGTCTGGGAATTACTTACAACTTTATCCCAATCCTGCTGTTTCTCTTTCAATTCTTTCGCCCAATTCTCATTGACACAAGTGAGCTCCTCATCGACATGTGCAAATCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 296 107 54 41</canonical_bands>
                <polymorphic_bands>798 107 54 41</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTTCTTTGTTATACAGGGTCT</pcr_primer_p1>
		<pcr_primer_p2>AGGATTGGGATAAAGTTGTAAGT</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>CCTTTCTTTGTTATACAGGGTCTCGCATGATTACCAGGACTCAAGTTTGTACTGCTATAAAACTTGAGTAGAGTGTTGTACTGAGCTCAAATTTGAAATGCAAAAACTCAAAAAATTTATCAGTAAACTGACCAAGTTTCAAATTGTTTGATCAACTTTGAGCTGAGTTATCGCTTGTCAAAGTTGCTACATCTCATAAAAATAACAAGAAGCATTACGCCGCTCATGTTTGAATATAACAAAGCGAGACTTGAGGAACCGCTTTGGAAATTTCAGTAGCTTTGATTCAGGCGTAAAATTATATTTCTACTAATTTTCGTGCTTCCAAGATACTTGTGTCTAAAGATATGCCAGCTTTTATCAAAATTGCGCCACCCAATCATAGAATGACCGCAGAACTTTGGGTCCATATATCTCATTTCCTGTGAAAGATATCAAAAAGCGGTCAACTGACAAAATATTTTTGATATTATGATAAAACGTTTATCATTTTACTTCTTTTTCATATCTTTCACGAGATTTATGGGCTCAAAGTGGACGGTTTGAATGTCATTCTATTAAAGCTAACGTAGACTTTCCTAGACTTGATGAGTAGTTTTGAAAATTTCGTAAAATTATTTTTCTACCAATTTTCGTGCTTCCAAGATACTTATGTCTAAAAATATACCTGTTTTCATAAGTCTGGGAATTACTTACAACTTTATCCCAATCCT</canonical_amplicon>
		<polymorphic_amplicon>CCTTTCTTTGTTATACAGGGTCTCGCATGATTACCAGGACTCAAGTTTGTACTGCTATAAAACTTGAGTAGAGTGTTGTACTGAGCTCAAATTTGAAATGCAAAAACTCAAAAAATTTATCAGTAAACTGACCAAGTTTCAAATTGTTTGATCAACTTTGAGCTGAGTTATCGCTTGTCAAAGTTGCTACATCTCATAAAAATAACAAGAAGCATTACGCCGCTCATGTTTGAATATAACAAAGCGAGACTTGAGGAACCGCTTTGGAAATTTCAGTAGCTTTGAWTCAGGCGTAAAATTATATTTCTACTAATTTTCGTGCTTCCAAGATACTTGTGTCTAAAGATATGCCAGCTTTTATCAAAATTGCGCCACCCAATCATAGAATGACCGCAGAACTTTGGGTCCATATATCTCATTTCCTGTGAAAGATATCAAAAAGCGGTCAACTGACAAAATATTTTTGATATTATGATAAAACGTTTATCATTTTACTTCTTTTTCATATCTTTCACGAGATTTATGGGCTCAAAGTGGACGGTTTGAATGTCATTCTATTAAAGCTAACGTAGACTTTCCTAGACTTGATGAGTAGTTTTGAAAATTTCGTAAAATTATTTTTCTACCAATTTTCGTGCTTCCAAGATACTTATGTCTAAAAATATACCTGTTTTCATAAGTCTGGGAATTACTTACAACTTTATCCCAATCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33767</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>197680</contig_pos>
        <strand>+</strand>
        <context>AAGTGTTGCG[A/G]AGATGGGGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAATAGATAGCTTTTTAAAACGAGAAAACTGCTGTGATCAAGTGTTGCG</left_flank>
        <right_flank>AGATGGGGGAACCGAGGACAAACGGTACGCGGGAACAGAAAAAAAACCAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGCACCAGGCCTCATGATGCGAGGGTCTCGATGGGAAAAGACATATATTGTGTGGTTTGGCAGTAAAATAGACACGGTAAAGAGAAAGAAGGGTTGTCGATTTACGGGGAAGGAGAAGGAGCGAATGGGGACTAGGGAGAAAAATATATAAATATAAAGAATATGGATCGATGTAAGCCTTTGAGGATTTAGATGACACTTTAAACACAATCTTCTTTTTTTAAATATACGACATTATGTTCTTTAACCTAATCTAGTAGACTATTTCAGTCCGAGATGAACACAAATTTGGCGGATTTGCCGGTTCGTATTTTTCGCGTTTTATCGCAAGAGCTCGAGAAGGATAATTTATGGACGAAAATTGTGGACTACGACCAGGACCCGATTTTTTCTATGAAGTTAGGAAAGAGGAATTTTAAATGGAAACAATTTAAATTACAGACAACTAGAAATAGATAGCTTTTTAAAACGAGAAAACTGCTGTGATCAAGTGTTGCGAAGATGGGGGAACCGAGGACAAACGGTACGCGGGAACAGAAAAAAAACCAAAATTTGAGAAGATTCTAGGTTGGCGATTTGTTGGCACGACTACAATATTTATCAAGAACATATGAAGACGAATTTGATACTATTCAATTTCAATTAAGGCGAAAATTTAGTAAGTTTTGCATTAAACGGAAAAAAAATCCAAAAAAAAAGAAAAAACAGTTGTCCACGAGGACTCCACAGCAGACGCAGTTTTCTCGGCCACCGGAGTTTTCTAGTACTCCAAACCCGCGGTTGTCCAAATTTAATTTTACAGAAGCATTGCGATGGGTTCCATATCTCGATGAGCCAGTCACAATTAGTTTCGATGGGGATTTCATAAAACTAGAATGCAAAGCTCAAGGATTTCCCACTCCTCAAATAAAGTGGTATACAAATGATTCGAAGGACCCGATACATACTGGGAGATCGTACACTCTCTTGAGGTTTAAAAAATATATTTTGAGATAAAAT</canonical>
            <polymorphic>CTGCACCAGGCCTCATGATGCGAGGGTCTCGATGGGAAAAGACATATATTGTGTGGTTTGGCAGTAAAATAGACACGGTAAAGAGAAAGAAGGGTTGTCGATTTACGGGGAAGGAGAAGGAGCGAATGGGGACTAGGGAGAAAAATATATAAATATAAAGAATATGGATCGATGTAAGCCTTTGAGGATTTAGATGACACTTTAAACACAATCTTCTTTTTTTAAATATACGACATTATGTTCTTTAACCTAATCTAGTAGACTATTTCAGTCCGAGATGAACACAAATTTGGCGGATTTGCCGGTTCGTATTTTTCGCGTTTTATCGCAAGAGCTCGAGAAGGATAATTTATGGACGAAAATTGTGGACTACGACCAGGACCCGATTTTTTCTATGAAGTTAGGAAAGAGGAATTTTAAATGGAAACAATTTAAATTACAGACAACTAGAAATAGATAGCTTTTTAAAACGAGAAAACTGCTGTGATCAAGTGTTGCGRAGATGGGGGAACCGAGGACAAACGGTACGCGGGAACAGAAAAAAAACCAAAATTTGAGAAGATTCTAGGTTGGCGATTTGTTGGCACGACTACAATATTTATCAAGAACATATGAAGACGAATTTGATACTATTCAATTTCAATTAAGGCGAAAATTTAGTAAGTTTTGCATTAAACGGAAAAAAAATCCAAAAAAAAAGAAAAAACAGTTGTCCACGAGGACTCCACAGCAGACGCAGTTTTCTCGGCCACCGGAGTTTTCTAGTACTCCAAACCCGCGGTTGTCCAAATTTAATTTTACAGAAGCATTGCGATGGGTTCCATATCTCGATGAGCCAGTCACAATTAGTTTCGATGGGGATTTCATAAAACTAGAATGCAAAGCTCAAGGATTTCCCACTCCTCAAATAAAGTGGTATACAAATGATTCGAAGGACCCGATACATACTGGGAGATCGTACACTCTCTTGAGGTTTAAAAAATATATTTTGAGATAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAGGAATTTTAAATGGAAAC</pcr_primer_p1>
		<pcr_primer_p2>CGCCTTAATTGAAATTGAATAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAGAGGAATTTTAAATGGAAACAATTTAAATTACAGACAACTAGAAATAGATAGCTTTTTAAAACGAGAAAACTGCTGTGATCAAGTGTTGCGAAGATGGGGGAACCGAGGACAAACGGTACGCGGGAACAGAAAAAAAACCAAAATTTGAGAAGATTCTAGGTTGGCGATTTGTTGGCACGACTACAATATTTATCAAGAACATATGAAGACGAATTTGATACTATTCAATTTCAATTAAGGCG</canonical_amplicon>
		<polymorphic_amplicon>AAAGAGGAATTTTAAATGGAAACAATTTAAATTACAGACAACTAGAAATAGATAGCTTTTTAAAACGAGAAAACTGCTGTGATCAAGTGTTGCGRAGATGGGGGAACCGAGGACAAACGGTACGCGGGAACAGAAAAAAAACCAAAATTTGAGAAGATTCTAGGTTGGCGATTTGTTGGCACGACTACAATATTTATCAAGAACATATGAAGACGAATTTGATACTATTCAATTTCAATTAAGGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33768</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>197719</contig_pos>
        <strand>+</strand>
        <context>GCGGGAACAG[A/C]AAAAAAACCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAAGTGTTGCGAAGATGGGGGAACCGAGGACAAACGGTACGCGGGAACAG</left_flank>
        <right_flank>AAAAAAACCAAAATTTGAGAAGATTCTAGGTTGGCGATTTGTTGGCACGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACATATATTGTGTGGTTTGGCAGTAAAATAGACACGGTAAAGAGAAAGAAGGGTTGTCGATTTACGGGGAAGGAGAAGGAGCGAATGGGGACTAGGGAGAAAAATATATAAATATAAAGAATATGGATCGATGTAAGCCTTTGAGGATTTAGATGACACTTTAAACACAATCTTCTTTTTTTAAATATACGACATTATGTTCTTTAACCTAATCTAGTAGACTATTTCAGTCCGAGATGAACACAAATTTGGCGGATTTGCCGGTTCGTATTTTTCGCGTTTTATCGCAAGAGCTCGAGAAGGATAATTTATGGACGAAAATTGTGGACTACGACCAGGACCCGATTTTTTCTATGAAGTTAGGAAAGAGGAATTTTAAATGGAAACAATTTAAATTACAGACAACTAGAAATAGATAGCTTTTTAAAACGAGAAAACTGCTGTGATCAAGTGTTGCGAAGATGGGGGAACCGAGGACAAACGGTACGCGGGAACAGAAAAAAAACCAAAATTTGAGAAGATTCTAGGTTGGCGATTTGTTGGCACGACTACAATATTTATCAAGAACATATGAAGACGAATTTGATACTATTCAATTTCAATTAAGGCGAAAATTTAGTAAGTTTTGCATTAAACGGAAAAAAAATCCAAAAAAAAAGAAAAAACAGTTGTCCACGAGGACTCCACAGCAGACGCAGTTTTCTCGGCCACCGGAGTTTTCTAGTACTCCAAACCCGCGGTTGTCCAAATTTAATTTTACAGAAGCATTGCGATGGGTTCCATATCTCGATGAGCCAGTCACAATTAGTTTCGATGGGGATTTCATAAAACTAGAATGCAAAGCTCAAGGATTTCCCACTCCTCAAATAAAGTGGTATACAAATGATTCGAAGGACCCGATACATACTGGGAGATCGTACACTCTCTTGAGGTTTAAAAAATATATTTTGAGATAAAATAAAAGGTTTAGATGTAAATGCTCAACAGAACATCAGTAT</canonical>
            <polymorphic>AGACATATATTGTGTGGTTTGGCAGTAAAATAGACACGGTAAAGAGAAAGAAGGGTTGTCGATTTACGGGGAAGGAGAAGGAGCGAATGGGGACTAGGGAGAAAAATATATAAATATAAAGAATATGGATCGATGTAAGCCTTTGAGGATTTAGATGACACTTTAAACACAATCTTCTTTTTTTAAATATACGACATTATGTTCTTTAACCTAATCTAGTAGACTATTTCAGTCCGAGATGAACACAAATTTGGCGGATTTGCCGGTTCGTATTTTTCGCGTTTTATCGCAAGAGCTCGAGAAGGATAATTTATGGACGAAAATTGTGGACTACGACCAGGACCCGATTTTTTCTATGAAGTTAGGAAAGAGGAATTTTAAATGGAAACAATTTAAATTACAGACAACTAGAAATAGATAGCTTTTTAAAACGAGAAAACTGCTGTGATCAAGTGTTGCGAAGATGGGGGAACCGAGGACAAACGGTACGCGGGAACAGMAAAAAAACCAAAATTTGAGAAGATTCTAGGTTGGCGATTTGTTGGCACGACTACAATATTTATCAAGAACATATGAAGACGAATTTGATACTATTCAATTTCAATTAAGGCGAAAATTTAGTAAGTTTTGCATTAAACGGAAAAAAAATCCAAAAAAAAAGAAAAAACAGTTGTCCACGAGGACTCCACAGCAGACGCAGTTTTCTCGGCCACCGGAGTTTTCTAGTACTCCAAACCCGCGGTTGTCCAAATTTAATTTTACAGAAGCATTGCGATGGGTTCCATATCTCGATGAGCCAGTCACAATTAGTTTCGATGGGGATTTCATAAAACTAGAATGCAAAGCTCAAGGATTTCCCACTCCTCAAATAAAGTGGTATACAAATGATTCGAAGGACCCGATACATACTGGGAGATCGTACACTCTCTTGAGGTTTAAAAAATATATTTTGAGATAAAATAAAAGGTTTAGATGTAAATGCTCAACAGAACATCAGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAGGAATTTTAAATGGAAAC</pcr_primer_p1>
		<pcr_primer_p2>CGCCTTAATTGAAATTGAATAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAGAGGAATTTTAAATGGAAACAATTTAAATTACAGACAACTAGAAATAGATAGCTTTTTAAAACGAGAAAACTGCTGTGATCAAGTGTTGCGAAGATGGGGGAACCGAGGACAAACGGTACGCGGGAACAGAAAAAAAACCAAAATTTGAGAAGATTCTAGGTTGGCGATTTGTTGGCACGACTACAATATTTATCAAGAACATATGAAGACGAATTTGATACTATTCAATTTCAATTAAGGCG</canonical_amplicon>
		<polymorphic_amplicon>AAAGAGGAATTTTAAATGGAAACAATTTAAATTACAGACAACTAGAAATAGATAGCTTTTTAAAACGAGAAAACTGCTGTGATCAAGTGTTGCGAAGATGGGGGAACCGAGGACAAACGGTACGCGGGAACAGMAAAAAAACCAAAATTTGAGAAGATTCTAGGTTGGCGATTTGTTGGCACGACTACAATATTTATCAAGAACATATGAAGACGAATTTGATACTATTCAATTTCAATTAAGGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33769</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>275883</contig_pos>
        <strand></strand>
        <context>gataattgag[G/C]ttaaaccaag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TATCACTTGACCATTTTTTAATATCTCTTATAGGAGCCGAGATAATTGAG</left_flank>
        <right_flank>TTAAACCAAGCTCGGGGCCCTTCTATAACGGGTCCCAGTTCCTTCAAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAACCGCTGGTGGATGGTTAGTTGAATTTGCTGCACTTAAAAGTCAATTCACCCGAACGCACCCGCCCGGGCGGCTCACGGGCGACCGACGGGTGGCCCATTTATCCACCCGCCAAAATGGGAACCCCATTTTGTGAAGAAACTTGGCATTCTAAAAAAAATATTATATTTTGTGTAAAGTCATGAAATCAAAAAAAAATTAATAATCAAAGACCTTTAGAACAACACTAATCCTTTTGTTTCCACCACAGGAACAATATTTTCAGCCCAAGATCATATGACTTGAGCACCTCATGATTAATTTAGCACTCTGAAAACATGCCGTAAAACCTGCAATAGAAGTGCCCCATACATTTTAAATTTGAGCTAATTTTTTCTCGGTTCCTTTTGAAGATATGTAAAAGTTGTAGATTGATGAATTGTTTATCATATTGTCACAAACATTTTATCACTTGACCATTTTTTAATATCTCTTATAGGAGCCGAGATAATTGAGGTTAAACCAAGCTCGGGGCCCTTCTATAACGGGTCCCAGTTCCTTCAAATTCAACTTTTTTCACAGGTGATTCGCGAACAATCCGTTACGAGTTCCCGCCCGGTTCGCCTTTTACCTGTGTTAGAACTTCAAAACCAATTTTTTCAGAAATGAAGGAAAAGGACTCTCGTTGTCTGAAACTGTCGGTGCTGGAACTGCAAAGAAATCGAAGGCATCGCTGAACGCGGAATTCTTCGCAAAGTTGAAAAAACTTTTGAAAATTCTGATACCCGGTCCATTTTCGACGGAGTGTTCTATATGATTGTCATTGGATTTGTTCTTCTTGCTCGTACGATTGCTGACGTCTACATGATTACAAATGCCACTAGTGTTGAAGCGTAAGAGCATATTTTTTAATAGAAAAAGAATTCCAACTATCAGCTCAATTATCGATCGGAGTCCGATAATGTTCGCCATGTCAGTGTTCAAATATTTCCTCAATTTACCAGCTATTTCTCTTAT</canonical>
            <polymorphic>TTTCAACCGCTGGTGGATGGTTAGTTGAATTTGCTGCACTTAAAAGTCAATTCACCCGAACGCACCCGCCCGGGCGGCTCACGGGCGACCGACGGGTGGCCCATTTATCCACCCGCCAAAATGGGAACCCCATTTTGTGAAGAAACTTGGCATTCTAAAAAAAATATTATATTTTGTGTAAAGTCATGAAATCAAAAAAAAATTAATAATCAAAGACCTTTAGAACAACACTAATCCTTTTGTTTCCACCACAGGAACAATATTTTCAGCCCAAGATCATATGACTTGAGCACCTCATGATTAATTTAGCACTCTGAAAACATGCCGTAAAACCTGCAATAGAAGTGCCCCATACATTTTAAATTTGAGCTAATTTTTTCTCGGTTCCTTTTGAAGATATGTAAAAGTTGTAGATTGATGAATTGTTTATCATATTGTCACAAACATTTTATCACTTGACCATTTTTTAATATCTCTTATAGGAGCCGAGATAATTGAGSTTAAACCAAGCTCGGGGCCCTTCTATAACGGGTCCCAGTTCCTTCAAATTCAACTTTTTTCACAGGTGATTCGCGAACAATCCGTTACGAGTTCCCGCCCGGTTCGCCTTTTACCTGTGTTAGAACTTCAAAACCAATTTTTTCAGAAATGAAGGAAAAGGACTCTCGTTGTCTGAAACTGTCGGTGCTGGAACTGCAAAGAAATCGAAGGCATCGCTGAACGCGGAATTCTTCGCAAAGTTGAAAAAACTTTTGAAAATTCTGATACCCGGTCCATTTTCGACGGAGTGTTCTATATGATTGTCATTGGATTTGTTCTTCTTGCTCGTACGATTGCTGACGTCTACATGATTACAAATGCCACTAGTGTTGAAGCGTAAGAGCATATTTTTTAATAGAAAAAGAATTCCAACTATCAGCTCAATTATCGATCGGAGTCCGATAATGTTCGCCATGTCAGTGTTCAAATATTTCCTCAATTTACCAGCTATTTCTCTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTAATTTAGCACTCTGAAAACA</pcr_primer_p1>
		<pcr_primer_p2>AAAGTTGAATTTGAAGGAACTG</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>GATTAATTTAGCACTCTGAAAACATGCCGTAAAACCTGCAATAGAAGTGCCCCATACATTTTAAATTTGAGCTAATTTTTTCTCGGTTCCTTTTGAAGATATGTAAAAGTTGTAGATTGATGAATTGTTTATCATATTGTCACAAACATTTTATCACTTGACCATTTTTTAATATCTCTTATAGGAGCCGAGATAATTGAGGTTAAACCAAGCTCGGGGCCCTTCTATAACGGGTCCCAGTTCCTTCAAATTCAACTTT</canonical_amplicon>
		<polymorphic_amplicon>GATTAATTTAGCACTCTGAAAACATGCCGTAAAACCTGCAATAGAAGTGCCCCATACATTTTAAATTTGAGCTAATTTTTTCTCGGTTCCTTTTGAAGATATGTAAAAGTTGTAGATTGATGAATTGTTTATCATATTGTCACAAACATTTTATCACTTGACCATTTTTTAATATCTCTTATAGGAGCCGAGATAATTGAGSTTAAACCAAGCTCGGGGCCCTTCTATAACGGGTCCCAGTTCCTTCAAATTCAACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33770</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>302525</contig_pos>
        <strand>+</strand>
        <context>TCCTTCCTAA[A/G]ATTTGAACCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTAGATTTTTCAATGTTTGAGGAACACTCAAAATCCCAATCCTTCCTAA</left_flank>
        <right_flank>ATTTGAACCAGAAATTCGAAACTTATTCGAACTTGCTTCTATTCTCTCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTACCTCTCTCTCCTTCCTCGGAGGCCGCACCTCGAGAGCAAAATCTTTAAAGCCGCATATCTAAAGACCTACTGTAGCTAGAAAGCAGTGGTCAATTGCAAAACTGTTCAGCATAAAAGTTTACACATTTTTTAGTCGACAACTTTTTTCTAGCTACTGTAGTTTTGGAGATATGCGTCTTTAAAGATGTGGTACCTCTCTTTAACTACCTTATTTCCTCCCTGTAATAGTAGTCCACCCATACCGTCGACTTTGAGCTCAATTATCTCGTTTCCTGTAAAAGATATCAAATTTTTGTCAGCTAATAAAATATTGGTGGCATTGTGATAAATTATTCTTAAGCTAACAATTTTTTGATAGCTTTCACAGGAATCGAGATAATTGAGCCCAAAGTTGACAGTGGATGTTCTCTACAAGACTCTACAAACTTTTATGAAAATCTGATGGTTTAGATTTTTCAATGTTTGAGGAACACTCAAAATCCCAATCCTTCCTAAAATTTGAACCAGAAATTCGAAACTTATTCGAACTTGCTTCTATTCTCTCTATTTGCGGGGTTATTAGCCATATATAGATTGTGATCAGTCTTCTCCCTCTCTCCCTCCCTAATTTCCAAAAAAACGAACACAAGACTGTCAGGTACGGTTTCTTTTCCTTCTCCCATTTCATTTTCTTTCATAATAATCGGAACGCCCTCTCTCTTTTCCATATATGGTGGTGGACTCATTGAATTGTCACTGAGTCAATGAAGTGTTTTCAATACAAAAAAGGAGAATGTTTGCGGTTCCATTAGGTTGATTTGTACGAAAAAAAAAATGTTCTAGAATGATTTGGGGTATGAGGGGGTGGGACGAAAAATGAATGAGTGAACTACAAAAAATGAAACGGCATATACTATACGACTCGGGGCGTCCGCCCTCTTTTGTCTTCGAAAAGAATGCATATAGTAATGAGACATGAATTGATACGGAAAAATTTCAATTCTTTCCTCGGAAGTT</canonical>
            <polymorphic>GCTACCTCTCTCTCCTTCCTCGGAGGCCGCACCTCGAGAGCAAAATCTTTAAAGCCGCATATCTAAAGACCTACTGTAGCTAGAAAGCAGTGGTCAATTGCAAAACTGTTCAGCATAAAAGTTTACACATTTTTTAGTCGACAACTTTTTTCTAGCTACTGTAGTTTTGGAGATATGCGTCTTTAAAGATGTGGTACCTCTCTTTAACTACCTTATTTCCTCCCTGTAATAGTAGTCCACCCATACCGTCGACTTTGAGCTCAATTATCTCGTTTCCTGTAAAAGATATCAAATTTTTGTCAGCTAATAAAATATTGGTGGCATTGTGATAAATTATTCTTAAGCTAACAATTTTTTGATAGCTTTCACAGGAATCGAGATAATTGAGCCCAAAGTTGACAGTGGATGTTCTCTACAAGACTCTACAAACTTTTATGAAAATCTGATGGTTTAGATTTTTCAATGTTTGAGGAACACTCAAAATCCCAATCCTTCCTAARATTTGAACCAGAAATTCGAAACTTATTCGAACTTGCTTCTATTCTCTCTATTTGCGGGGTTATTAGCCATATATAGATTGTGATCAGTCTTCTCCCTCTCTCCCTCCCTAATTTCCAAAAAAACGAACACAAGACTGTCAGGTACGGTTTCTTTTCCTTCTCCCATTTCATTTTCTTTCATAATAATCGGAACGCCCTCTCTCTTTTCCATATATGGTGGTGGACTCATTGAATTGTCACTGAGTCAATGAAGTGTTTTCAATACAAAAAAGGAGAATGTTTGCGGTTCCATTAGGTTGATTTGTACGAAAAAAAAAATGTTCTAGAATGATTTGGGGTATGAGGGGGTGGGACGAAAAATGAATGAGTGAACTACAAAAAATGAAACGGCATATACTATACGACTCGGGGCGTCCGCCCTCTTTTGTCTTCGAAAAGAATGCATATAGTAATGAGACATGAATTGATACGGAAAAATTTCAATTCTTTCCTCGGAAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>463 291 208 25 13</canonical_bands>
                <polymorphic_bands>463 291 221 25</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>230 167 122 118 97 95 40 32 29 19 18 14 13 6</canonical_bands>
                <polymorphic_bands>230 167 131 122 97 95 40 32 29 19 18 14 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGATGGTTTAGATTTTTCAAT</pcr_primer_p1>
		<pcr_primer_p2>TCCGATTATTATGAAAGAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTGATGGTTTAGATTTTTCAATGTTTGAGGAACACTCAAAATCCCAATCCTTCCTAAAATTTGAACCAGAAATTCGAAACTTATTCGAACTTGCTTCTATTCTCTCTATTTGCGGGGTTATTAGCCATATATAGATTGTGATCAGTCTTCTCCCTCTCTCCCTCCCTAATTTCCAAAAAAACGAACACAAGACTGTCAGGTACGGTTTCTTTTCCTTCTCCCATTTCATTTTCTTTCATAATAATCGGA</canonical_amplicon>
		<polymorphic_amplicon>TCTGATGGTTTAGATTTTTCAATGTTTGAGGAACACTCAAAATCCCAATCCTTCCTAARATTTGAACCAGAAATTCGAAACTTATTCGAACTTGCTTCTATTCTCTCTATTTGCGGGGTTATTAGCCATATATAGATTGTGATCAGTCTTCTCCCTCTCTCCCTCCCTAATTTCCAAAAAAACGAACACAAGACTGTCAGGTACGGTTTCTTTTCCTTCTCCCATTTCATTTTCTTTCATAATAATCGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33771</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>302536</contig_pos>
        <strand>+</strand>
        <context>ATTTGAACCA[C/G]AAATTCGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAATGTTTGAGGAACACTCAAAATCCCAATCCTTCCTAAAATTTGAACCA</left_flank>
        <right_flank>AAATTCGAAACTTATTCGAACTTGCTTCTATTCTCTCTATTTGCGGGGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCTTCCTCGGAGGCCGCACCTCGAGAGCAAAATCTTTAAAGCCGCATATCTAAAGACCTACTGTAGCTAGAAAGCAGTGGTCAATTGCAAAACTGTTCAGCATAAAAGTTTACACATTTTTTAGTCGACAACTTTTTTCTAGCTACTGTAGTTTTGGAGATATGCGTCTTTAAAGATGTGGTACCTCTCTTTAACTACCTTATTTCCTCCCTGTAATAGTAGTCCACCCATACCGTCGACTTTGAGCTCAATTATCTCGTTTCCTGTAAAAGATATCAAATTTTTGTCAGCTAATAAAATATTGGTGGCATTGTGATAAATTATTCTTAAGCTAACAATTTTTTGATAGCTTTCACAGGAATCGAGATAATTGAGCCCAAAGTTGACAGTGGATGTTCTCTACAAGACTCTACAAACTTTTATGAAAATCTGATGGTTTAGATTTTTCAATGTTTGAGGAACACTCAAAATCCCAATCCTTCCTAAAATTTGAACCAGAAATTCGAAACTTATTCGAACTTGCTTCTATTCTCTCTATTTGCGGGGTTATTAGCCATATATAGATTGTGATCAGTCTTCTCCCTCTCTCCCTCCCTAATTTCCAAAAAAACGAACACAAGACTGTCAGGTACGGTTTCTTTTCCTTCTCCCATTTCATTTTCTTTCATAATAATCGGAACGCCCTCTCTCTTTTCCATATATGGTGGTGGACTCATTGAATTGTCACTGAGTCAATGAAGTGTTTTCAATACAAAAAAGGAGAATGTTTGCGGTTCCATTAGGTTGATTTGTACGAAAAAAAAAATGTTCTAGAATGATTTGGGGTATGAGGGGGTGGGACGAAAAATGAATGAGTGAACTACAAAAAATGAAACGGCATATACTATACGACTCGGGGCGTCCGCCCTCTTTTGTCTTCGAAAAGAATGCATATAGTAATGAGACATGAATTGATACGGAAAAATTTCAATTCTTTCCTCGGAAGTTTGAGTTTTTAG</canonical>
            <polymorphic>CTCCTTCCTCGGAGGCCGCACCTCGAGAGCAAAATCTTTAAAGCCGCATATCTAAAGACCTACTGTAGCTAGAAAGCAGTGGTCAATTGCAAAACTGTTCAGCATAAAAGTTTACACATTTTTTAGTCGACAACTTTTTTCTAGCTACTGTAGTTTTGGAGATATGCGTCTTTAAAGATGTGGTACCTCTCTTTAACTACCTTATTTCCTCCCTGTAATAGTAGTCCACCCATACCGTCGACTTTGAGCTCAATTATCTCGTTTCCTGTAAAAGATATCAAATTTTTGTCAGCTAATAAAATATTGGTGGCATTGTGATAAATTATTCTTAAGCTAACAATTTTTTGATAGCTTTCACAGGAATCGAGATAATTGAGCCCAAAGTTGACAGTGGATGTTCTCTACAAGACTCTACAAACTTTTATGAAAATCTGATGGTTTAGATTTTTCAATGTTTGAGGAACACTCAAAATCCCAATCCTTCCTAAAATTTGAACCASAAATTCGAAACTTATTCGAACTTGCTTCTATTCTCTCTATTTGCGGGGTTATTAGCCATATATAGATTGTGATCAGTCTTCTCCCTCTCTCCCTCCCTAATTTCCAAAAAAACGAACACAAGACTGTCAGGTACGGTTTCTTTTCCTTCTCCCATTTCATTTTCTTTCATAATAATCGGAACGCCCTCTCTCTTTTCCATATATGGTGGTGGACTCATTGAATTGTCACTGAGTCAATGAAGTGTTTTCAATACAAAAAAGGAGAATGTTTGCGGTTCCATTAGGTTGATTTGTACGAAAAAAAAAATGTTCTAGAATGATTTGGGGTATGAGGGGGTGGGACGAAAAATGAATGAGTGAACTACAAAAAATGAAACGGCATATACTATACGACTCGGGGCGTCCGCCCTCTTTTGTCTTCGAAAAGAATGCATATAGTAATGAGACATGAATTGATACGGAAAAATTTCAATTCTTTCCTCGGAAGTTTGAGTTTTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGATGGTTTAGATTTTTCAAT</pcr_primer_p1>
		<pcr_primer_p2>TCCGATTATTATGAAAGAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTGATGGTTTAGATTTTTCAATGTTTGAGGAACACTCAAAATCCCAATCCTTCCTAAAATTTGAACCAGAAATTCGAAACTTATTCGAACTTGCTTCTATTCTCTCTATTTGCGGGGTTATTAGCCATATATAGATTGTGATCAGTCTTCTCCCTCTCTCCCTCCCTAATTTCCAAAAAAACGAACACAAGACTGTCAGGTACGGTTTCTTTTCCTTCTCCCATTTCATTTTCTTTCATAATAATCGGA</canonical_amplicon>
		<polymorphic_amplicon>TCTGATGGTTTAGATTTTTCAATGTTTGAGGAACACTCAAAATCCCAATCCTTCCTAAAATTTGAACCASAAATTCGAAACTTATTCGAACTTGCTTCTATTCTCTCTATTTGCGGGGTTATTAGCCATATATAGATTGTGATCAGTCTTCTCCCTCTCTCCCTCCCTAATTTCCAAAAAAACGAACACAAGACTGTCAGGTACGGTTTCTTTTCCTTCTCCCATTTCATTTTCTTTCATAATAATCGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33772</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>302592</contig_pos>
        <strand>+</strand>
        <context>GGGTTATTAG[C/T]CATATATAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAAACTTATTCGAACTTGCTTCTATTCTCTCTATTTGCGGGGTTATTAG</left_flank>
        <right_flank>CATATATAGATTGTGATCAGTCTTCTCCCTCTCTCCCTCCCTAATTTCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACCTACTGTAGCTAGAAAGCAGTGGTCAATTGCAAAACTGTTCAGCATAAAAGTTTACACATTTTTTAGTCGACAACTTTTTTCTAGCTACTGTAGTTTTGGAGATATGCGTCTTTAAAGATGTGGTACCTCTCTTTAACTACCTTATTTCCTCCCTGTAATAGTAGTCCACCCATACCGTCGACTTTGAGCTCAATTATCTCGTTTCCTGTAAAAGATATCAAATTTTTGTCAGCTAATAAAATATTGGTGGCATTGTGATAAATTATTCTTAAGCTAACAATTTTTTGATAGCTTTCACAGGAATCGAGATAATTGAGCCCAAAGTTGACAGTGGATGTTCTCTACAAGACTCTACAAACTTTTATGAAAATCTGATGGTTTAGATTTTTCAATGTTTGAGGAACACTCAAAATCCCAATCCTTCCTAAAATTTGAACCAGAAATTCGAAACTTATTCGAACTTGCTTCTATTCTCTCTATTTGCGGGGTTATTAGCCATATATAGATTGTGATCAGTCTTCTCCCTCTCTCCCTCCCTAATTTCCAAAAAAACGAACACAAGACTGTCAGGTACGGTTTCTTTTCCTTCTCCCATTTCATTTTCTTTCATAATAATCGGAACGCCCTCTCTCTTTTCCATATATGGTGGTGGACTCATTGAATTGTCACTGAGTCAATGAAGTGTTTTCAATACAAAAAAGGAGAATGTTTGCGGTTCCATTAGGTTGATTTGTACGAAAAAAAAAATGTTCTAGAATGATTTGGGGTATGAGGGGGTGGGACGAAAAATGAATGAGTGAACTACAAAAAATGAAACGGCATATACTATACGACTCGGGGCGTCCGCCCTCTTTTGTCTTCGAAAAGAATGCATATAGTAATGAGACATGAATTGATACGGAAAAATTTCAATTCTTTCCTCGGAAGTTTGAGTTTTTAGTCGTGTCTTGAATTCTTTTTATGAATTTTCCTTAAAGCTCGTTTATCTCAATTTCC</canonical>
            <polymorphic>GACCTACTGTAGCTAGAAAGCAGTGGTCAATTGCAAAACTGTTCAGCATAAAAGTTTACACATTTTTTAGTCGACAACTTTTTTCTAGCTACTGTAGTTTTGGAGATATGCGTCTTTAAAGATGTGGTACCTCTCTTTAACTACCTTATTTCCTCCCTGTAATAGTAGTCCACCCATACCGTCGACTTTGAGCTCAATTATCTCGTTTCCTGTAAAAGATATCAAATTTTTGTCAGCTAATAAAATATTGGTGGCATTGTGATAAATTATTCTTAAGCTAACAATTTTTTGATAGCTTTCACAGGAATCGAGATAATTGAGCCCAAAGTTGACAGTGGATGTTCTCTACAAGACTCTACAAACTTTTATGAAAATCTGATGGTTTAGATTTTTCAATGTTTGAGGAACACTCAAAATCCCAATCCTTCCTAAAATTTGAACCAGAAATTCGAAACTTATTCGAACTTGCTTCTATTCTCTCTATTTGCGGGGTTATTAGYCATATATAGATTGTGATCAGTCTTCTCCCTCTCTCCCTCCCTAATTTCCAAAAAAACGAACACAAGACTGTCAGGTACGGTTTCTTTTCCTTCTCCCATTTCATTTTCTTTCATAATAATCGGAACGCCCTCTCTCTTTTCCATATATGGTGGTGGACTCATTGAATTGTCACTGAGTCAATGAAGTGTTTTCAATACAAAAAAGGAGAATGTTTGCGGTTCCATTAGGTTGATTTGTACGAAAAAAAAAATGTTCTAGAATGATTTGGGGTATGAGGGGGTGGGACGAAAAATGAATGAGTGAACTACAAAAAATGAAACGGCATATACTATACGACTCGGGGCGTCCGCCCTCTTTTGTCTTCGAAAAGAATGCATATAGTAATGAGACATGAATTGATACGGAAAAATTTCAATTCTTTCCTCGGAAGTTTGAGTTTTTAGTCGTGTCTTGAATTCTTTTTATGAATTTTCCTTAAAGCTCGTTTATCTCAATTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>482 178 104 76 44 41 26 19 18 12</canonical_bands>
                <polymorphic_bands>660 104 76 44 41 26 19 18 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGATGGTTTAGATTTTTCAAT</pcr_primer_p1>
		<pcr_primer_p2>TCCGATTATTATGAAAGAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTGATGGTTTAGATTTTTCAATGTTTGAGGAACACTCAAAATCCCAATCCTTCCTAAAATTTGAACCAGAAATTCGAAACTTATTCGAACTTGCTTCTATTCTCTCTATTTGCGGGGTTATTAGCCATATATAGATTGTGATCAGTCTTCTCCCTCTCTCCCTCCCTAATTTCCAAAAAAACGAACACAAGACTGTCAGGTACGGTTTCTTTTCCTTCTCCCATTTCATTTTCTTTCATAATAATCGGA</canonical_amplicon>
		<polymorphic_amplicon>TCTGATGGTTTAGATTTTTCAATGTTTGAGGAACACTCAAAATCCCAATCCTTCCTAAAATTTGAACCAGAAATTCGAAACTTATTCGAACTTGCTTCTATTCTCTCTATTTGCGGGGTTATTAGYCATATATAGATTGTGATCAGTCTTCTCCCTCTCTCCCTCCCTAATTTCCAAAAAAACGAACACAAGACTGTCAGGTACGGTTTCTTTTCCTTCTCCCATTTCATTTTCTTTCATAATAATCGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33773</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>304769</contig_pos>
        <strand>+</strand>
        <context>CCAAACTYCA[C/T]TACAgttcaa</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTATTTTTTTTATCAGAAAGATTTTCGAAAATCTCGTTTCCAAACTTCA</left_flank>
        <right_flank>TACAGTTCAATAACCAACGTTCTAGCACCTCTAAAAGCCGAGATACAGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCAAATTTCCGGAGAAGATTTCGGTATGCCTAATGTTAACAGAAAAAATGTTAACAAACAAACAATGAGTCGACAAATCTCGGAAATTATTTCCTTTTTTTTTGAAATCTTTTAAATTTTTTTTCTTACATATTTTCTTTCCTGGTTTTTTTTCCTGACAAGTAACAAGTTATGTAATAGTTATGTAATCAAATATAGATTCCTATTCTGACTTTCTAAACAAACATATCCTGGGGAAACTGGTTCGTAATGCTAGATTGGAATGGTCAGAGGTTAGCCACCCACCCCCATTATTATAGGTTTCAGGTTCCAGTTCAGTGTACAATGATAACTTTAGGTTTCATGTTTATATTCCCATAACCATCATCTCCTTCTTCTACCAACTACTTGACGGGCGAAGTTTTTGAATTCCTGGATTTTTGAAAATCCTTGAATTTCAAAATTTTTAATTATTTTTTTTATCAGAAAGATTTTCGAAAATCTCGTTTCCAAACTTCATTACAGTTCAATAACCAACGTTCTAGCACCTCTAAAAGCCGAGATACAGTGATTTGAAGTTTTGAAGAGACGCAGACAGTTAGAGTGTATCGTTGTCTGCGTCTCTTGCTTTCGAAAAATCTCGGCTCTCAGTGGCCCTAGAAAAGGAAAGAAGACACTTCTTCACACTTTAGATTTCATGTTCCAGCTCAGTGTACAATATGATAACTTTTCCACAAATATTTATATTCCCATAACCATTCCCTGGCTACTTGACGGGCGGGTTTCTCATGGCGAACCACTCATAATCCACTCTTCATGCATAACCGAAAAACTCCCAATCGTTTTGCTCCGTTTCTATGTAACTCGATACTGTATTTCATGTATTTTCTTCACTTATTTAATATTTGAATACGGTAATTATGACACCTAGTTGACAGAGAAATAGTGTGAGATTTGAAGAGAGCGCAGACAAAAGTGCGTGATGGTGGCTCGTTTGCCGTGTCAAGATCCTACTTTTTT</canonical>
            <polymorphic>CGCAAATTTCCGGAGAAGATTTCGGTATGCCTAATGTTAACAGAAAAAATGTTAACAAACAAACAATGAGTCGACAAATCTCGGAAATTATTTCCTTTTTTTTTGAAATCTTTTAAATTTTTTTTCTTACATATTTTCTTTCCTGGTTTTTTTTCCTGACAAGTAACAAGTTATGTAATAGTTATGTAATCAAATATAGATTCCTATTCTGACTTTCTAAACAAACATATCCTGGGGAAACTGGTTCGTAATGCTAGATTGGAATGGTCAGAGGTTAGCCACCCACCCCCATTATTATAGGTTTCAGGTTCCAGTTCAGTGTACAATGATAACTTTAGGTTTCATGTTTATATTCCCATAACCATCATCTCCTTCTTCTACCAACTACTTGACGGGCGAAGTTTTTGAATTCCTGGATTTTTGAAAATCCTTGAATTTCAAAATTTTTAATTATTTTTTTTATCAGAAAGATTTTCGAAAATCTCGTTTCCAAACTTCAYTACAGTTCAATAACCAACGTTCTAGCACCTCTAAAAGCCGAGATACAGTGATTTGAAGTTTTGAAGAGACGCAGACAGTTAGAGTGTATCGTTGTCTGCGTCTCTTGCTTTCGAAAAATCTCGGCTCTCAGTGGCCCTAGAAAAGGAAAGAAGACACTTCTTCACACTTTAGATTTCATGTTCCAGCTCAGTGTACAATATGATAACTTTTCCACAAATATTTATATTCCCATAACCATTCCCTGGCTACTTGACGGGCGGGTTTCTCATGGCGAACCACTCATAATCCACTCTTCATGCATAACCGAAAAACTCCCAATCGTTTTGCTCCGTTTCTATGTAACTCGATACTGTATTTCATGTATTTTCTTCACTTATTTAATATTTGAATACGGTAATTATGACACCTAGTTGACAGAGAAATAGTGTGAGATTTGAAGAGAGCGCAGACAAAAGTGCGTGATGGTGGCTCGTTTGCCGTGTCAAGATCCTACTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATTCCTGGATTTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>TGAAATCTAAAGTGTGAAGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>TGAATTCCTGGATTTTTGAAAATCCTTGAATTTCAAAATTTTTAATTATTTTTTTTATCAGAAAGATTTTCGAAAATCTCGTTTCCAAACTTCATTACAGTTCAATAACCAACGTTCTAGCACCTCTAAAAGCCGAGATACAGTGATTTGAAGTTTTGAAGAGACGCAGACAGTTAGAGTGTATCGTTGTCTGCGTCTCTTGCTTTCGAAAAATCTCGGCTCTCAGTGGCCCTAGAAAAGGAAAGAAGACACTTCTTCACACTTTAGATTTCA</canonical_amplicon>
		<polymorphic_amplicon>TGAATTCCTGGATTTTTGAAAATCCTTGAATTTCAAAATTTTTAATTATTTTTTTTATCAGAAAGATTTTCGAAAATCTCGTTTCCAAACTTCAYTACAGTTCAATAACCAACGTTCTAGCACCTCTAAAAGCCGAGATACAGTGATTTGAAGTTTTGAAGAGACGCAGACAGTTAGAGTGTATCGTTGTCTGCGTCTCTTGCTTTCGAAAAATCTCGGCTCTCAGTGGCCCTAGAAAAGGAAAGAAGACACTTCTTCACACTTTAGATTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33774</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>305108</contig_pos>
        <strand>+</strand>
        <context>TCCGTTTCTA[C/T]GTAACTCGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACTCTTCATGCATAACCGAAAAACTCCCAATCGTTTTGCTCCGTTTCTA</left_flank>
        <right_flank>GTAACTCGATACTGTATTTCATGTATTTTCTTCACTTATTTAATATTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCATGTTTATATTCCCATAACCATCATCTCCTTCTTCTACCAACTACTTGACGGGCGAAGTTTTTGAATTCCTGGATTTTTGAAAATCCTTGAATTTCAAAATTTTTAATTATTTTTTTTATCAGAAAGATTTTCGAAAATCTCGTTTCCAAACTTCATTACAGTTCAATAACCAACGTTCTAGCACCTCTAAAAGCCGAGATACAGTGATTTGAAGTTTTGAAGAGACGCAGACAGTTAGAGTGTATCGTTGTCTGCGTCTCTTGCTTTCGAAAAATCTCGGCTCTCAGTGGCCCTAGAAAAGGAAAGAAGACACTTCTTCACACTTTAGATTTCATGTTCCAGCTCAGTGTACAATATGATAACTTTTCCACAAATATTTATATTCCCATAACCATTCCCTGGCTACTTGACGGGCGGGTTTCTCATGGCGAACCACTCATAATCCACTCTTCATGCATAACCGAAAAACTCCCAATCGTTTTGCTCCGTTTCTATGTAACTCGATACTGTATTTCATGTATTTTCTTCACTTATTTAATATTTGAATACGGTAATTATGACACCTAGTTGACAGAGAAATAGTGTGAGATTTGAAGAGAGCGCAGACAAAAGTGCGTGATGGTGGCTCGTTTGCCGTGTCAAGATCCTACTTTTTTGATCTTCTTTTTTTCCGTATGGTGACGAGGCGTGAAACGGGATTAACTACTGTACGACAATGAGAATTTATTAGTATGGTTTTTGATAAGATGATAGTCATAGGTTTTGTTTTGTGCGGAAATTTATCTATTTTCCTAATATTACTGCGAAAAAAAATCCAAAATCCCCCAAAAATCGGAGAATTTAGCGAACAATTTTTTGACGGTCTGCAAAACAGGAAAAAGAAAACAAAAGTGGTTGGGGTTCGAACCCGGGATCTGAGATTGGTAGTCAAACCTGTTAGCCAATGGGCCACCAGCGCCGCCATAAATTCCGCCAACGGTGGCGCCCACCACCCT</canonical>
            <polymorphic>TTTCATGTTTATATTCCCATAACCATCATCTCCTTCTTCTACCAACTACTTGACGGGCGAAGTTTTTGAATTCCTGGATTTTTGAAAATCCTTGAATTTCAAAATTTTTAATTATTTTTTTTATCAGAAAGATTTTCGAAAATCTCGTTTCCAAACTTCATTACAGTTCAATAACCAACGTTCTAGCACCTCTAAAAGCCGAGATACAGTGATTTGAAGTTTTGAAGAGACGCAGACAGTTAGAGTGTATCGTTGTCTGCGTCTCTTGCTTTCGAAAAATCTCGGCTCTCAGTGGCCCTAGAAAAGGAAAGAAGACACTTCTTCACACTTTAGATTTCATGTTCCAGCTCAGTGTACAATATGATAACTTTTCCACAAATATTTATATTCCCATAACCATTCCCTGGCTACTTGACGGGCGGGTTTCTCATGGCGAACCACTCATAATCCACTCTTCATGCATAACCGAAAAACTCCCAATCGTTTTGCTCCGTTTCTAYGTAACTCGATACTGTATTTCATGTATTTTCTTCACTTATTTAATATTTGAATACGGTAATTATGACACCTAGTTGACAGAGAAATAGTGTGAGATTTGAAGAGAGCGCAGACAAAAGTGCGTGATGGTGGCTCGTTTGCCGTGTCAAGATCCTACTTTTTTGATCTTCTTTTTTTCCGTATGGTGACGAGGCGTGAAACGGGATTAACTACTGTACGACAATGAGAATTTATTAGTATGGTTTTTGATAAGATGATAGTCATAGGTTTTGTTTTGTGCGGAAATTTATCTATTTTCCTAATATTACTGCGAAAAAAAATCCAAAATCCCCCAAAAATCGGAGAATTTAGCGAACAATTTTTTGACGGTCTGCAAAACAGGAAAAAGAAAACAAAAGTGGTTGGGGTTCGAACCCGGGATCTGAGATTGGTAGTCAAACCTGTTAGCCAATGGGCCACCAGCGCCGCCATAAATTCCGCCAACGGTGGCGCCCACCACCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCACACTTTAGATTTCATGTTCC</pcr_primer_p1>
		<pcr_primer_p2>GGTGTCATAATTACCGTATTCAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCACACTTTAGATTTCATGTTCCAGCTCAGTGTACAATATGATAACTTTTCCACAAATATTTATATTCCCATAACCATTCCCTGGCTACTTGACGGGCGGGTTTCTCATGGCGAACCACTCATAATCCACTCTTCATGCATAACCGAAAAACTCCCAATCGTTTTGCTCCGTTTCTATGTAACTCGATACTGTATTTCATGTATTTTCTTCACTTATTTAATATTTGAATACGGTAATTATGACACC</canonical_amplicon>
		<polymorphic_amplicon>TCACACTTTAGATTTCATGTTCCAGCTCAGTGTACAATATGATAACTTTTCCACAAATATTTATATTCCCATAACCATTCCCTGGCTACTTGACGGGCGGGTTTCTCATGGCGAACCACTCATAATCCACTCTTCATGCATAACCGAAAAACTCCCAATCGTTTTGCTCCGTTTCTAYGTAACTCGATACTGTATTTCATGTATTTTCTTCACTTATTTAATATTTGAATACGGTAATTATGACACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33775</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>351576</contig_pos>
        <strand></strand>
        <context>ctttccatta[T/G]agtgtttatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GAATTGAGTTATATGGGCTCAAAGTTGGAGGGTTGTGAAGCTTTCCATTA</left_flank>
        <right_flank>AGTGTTTATTGTCACCTTTGAGATAAATTATATCATTTTCTGCGCAAGTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGCGAGAAGCAGAAGAGGAAGGAGGAGATGGGCGAGAGAAAGTTGGGCAAACATATGACCTCTCGGAAGAAAAGAAGAAGAAGAAAATGAAGGCAAACCATGGTGTAACAAGAAAATGGTGGGGGTAGTAAATCTGAGGGACCACTCCACTTTTTTGGAGTTGAGTTATGATTTTGGAACGCAAAAGTGCATCTTCTTCTTTTTGTTTTAATGAGAAATATCTAAAGATCTAGAAGATTACGGAAGAGGATAGAAGAGGATTTTTAGTTTTTTTTTCAGATGAGAGAAAAGATGAGAAGAGGGACACGCCCCTTTGAAGGCCACCTACAACTTTGACCCCATATATCTCGGTCCTTGTGGAAGATATAAAAATAGGATCAACTGACAAAATGTTAATAATAAAATCAAAATATTTTGTCAGGAAGTCACTTTTTGATATCTTTCACTGGAATTGAGTTATATGGGCTCAAAGTTGGAGGGTTGTGAAGCTTTCCATTATAGTGTTTATTGTCACCTTTGAGATAAATTATATCATTTTCTGCGCAAGTTATCAAAAAGTAGTCTACAGACAAAATGTTTATCGCAATATCAAAAATGTTTTGTCAGTTGATAACTTTTTGATACGTCTTACAGGAATCAAGTTACATGGGCTCAAAGAAAGTTGGAACTTTTTGTCTGAGGAAATGCCCTGCTGCTGCACCTGCTCCCTGATTTTTGACACCTCTTTTCTTCTTTTCCTGAAGTAGATCAGAAACAAAAGATGGATAGGTCCGCCTCACAAAAGGGGGGAGAGGTGTTCGTTGCGCGATCAGGCGGATTAAATTTAAGAAGAAGAAGAAGAAAAGGGTGGTCAATTGGGGGGGGGGGGGGGGGAGGCAGCAGCCAGCAGCGCGCCGAAAGACCACATTTTGACGTGCTAATAAATCATGTTAGTGTGATTGACTTCCGGAGAGTAAAACACTACTTTCCCACCTGTGCCCTTTTTTGAGATGGCCGTTA</canonical>
            <polymorphic>AGGCGAGAAGCAGAAGAGGAAGGAGGAGATGGGCGAGAGAAAGTTGGGCAAACATATGACCTCTCGGAAGAAAAGAAGAAGAAGAAAATGAAGGCAAACCATGGTGTAACAAGAAAATGGTGGGGGTAGTAAATCTGAGGGACCACTCCACTTTTTTGGAGTTGAGTTATGATTTTGGAACGCAAAAGTGCATCTTCTTCTTTTTGTTTTAATGAGAAATATCTAAAGATCTAGAAGATTACGGAAGAGGATAGAAGAGGATTTTTAGTTTTTTTTTCAGATGAGAGAAAAGATGAGAAGAGGGACACGCCCCTTTGAAGGCCACCTACAACTTTGACCCCATATATCTCGGTCCTTGTGGAAGATATAAAAATAGGATCAACTGACAAAATGTTAATAATAAAATCAAAATATTTTGTCAGGAAGTCACTTTTTGATATCTTTCACTGGAATTGAGTTATATGGGCTCAAAGTTGGAGGGTTGTGAAGCTTTCCATTAKAGTGTTTATTGTCACCTTTGAGATAAATTATATCATTTTCTGCGCAAGTTATCAAAAAGTAGTCTACAGACAAAATGTTTATCGCAATATCAAAAATGTTTTGTCAGTTGATAACTTTTTGATACGTCTTACAGGAATCAAGTTACATGGGCTCAAAGAAAGTTGGAACTTTTTGTCTGAGGAAATGCCCTGCTGCTGCACCTGCTCCCTGATTTTTGACACCTCTTTTCTTCTTTTCCTGAAGTAGATCAGAAACAAAAGATGGATAGGTCCGCCTCACAAAAGGGGGGAGAGGTGTTCGTTGCGCGATCAGGCGGATTAAATTTAAGAAGAAGAAGAAGAAAAGGGTGGTCAATTGGGGGGGGGGGGGGGGGAGGCAGCAGCCAGCAGCGCGCCGAAAGACCACATTTTGACGTGCTAATAAATCATGTTAGTGTGATTGACTTCCGGAGAGTAAAACACTACTTTCCCACCTGTGCCCTTTTTTGAGATGGCCGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGATGAGAAGAGGGACAC</pcr_primer_p1>
		<pcr_primer_p2>GCATTTCCTCAGACAAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>401</pcr_amplicon_size>
		<canonical_amplicon>AAAAGATGAGAAGAGGGACACGCCCCTTTGAAGGCCACCTACAACTTTGACCCCATATATCTCGGTCCTTGTGGAAGATATAAAAATAGGATCAACTGACAAAATGTTAATAATAAAATCAAAATATTTTGTCAGGAAGTCACTTTTTGATATCTTTCACTGGAATTGAGTTATATGGGCTCAAAGTTGGAGGGTTGTGAAGCTTTCCATTATAGTGTTTATTGTCACCTTTGAGATAAATTATATCATTTTCTGCGCAAGTTATCAAAAAGTAGTCTACAGACAAAATGTTTATCGCAATATCAAAAATGTTTTGTCAGTTGATAACTTTTTGATACGTCTTACAGGAATCAAGTTACATGGGCTCAAAGAAAGTTGGAACTTTTTGTCTGAGGAAATGC</canonical_amplicon>
		<polymorphic_amplicon>AAAAGATGAGAAGAGGGACACGCCCCTTTGAAGGCCACCTACAACTTTGACCCCATATATCTCGGTCCTTGTGGAAGATATAAAAATAGGATCAACTGACAAAATGTTAATAATAAAATCAAAATATTTTGTCAGGAAGTCACTTTTTGATATCTTTCACTGGAATTGAGTTATATGGGCTCAAAGTTGGAGGGTTGTGAAGCTTTCCATTAKAGTGTTTATTGTCACCTTTGAGATAAATTATATCATTTTCTGCGCAAGTTATCAAAAAGTAGTCTACAGACAAAATGTTTATCGCAATATCAAAAATGTTTTGTCAGTTGATAACTTTTTGATACGTCTTACAGGAATCAAGTTACATGGGCTCAAAGAAAGTTGGAACTTTTTGTCTGAGGAAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33776</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>351608</contig_pos>
        <strand></strand>
        <context>gataaattat[A/C]tcattttctg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGTGAAGCTTTCCATTATAGTGTTTATTGTCACCTTTGAGATAAATTAT</left_flank>
        <right_flank>TCATTTTCTGCGCAAGTTATCAAAAAGTAGTCTACAGACAAAATGTTTAT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGAGAGAAAGTTGGGCAAACATATGACCTCTCGGAAGAAAAGAAGAAGAAGAAAATGAAGGCAAACCATGGTGTAACAAGAAAATGGTGGGGGTAGTAAATCTGAGGGACCACTCCACTTTTTTGGAGTTGAGTTATGATTTTGGAACGCAAAAGTGCATCTTCTTCTTTTTGTTTTAATGAGAAATATCTAAAGATCTAGAAGATTACGGAAGAGGATAGAAGAGGATTTTTAGTTTTTTTTTCAGATGAGAGAAAAGATGAGAAGAGGGACACGCCCCTTTGAAGGCCACCTACAACTTTGACCCCATATATCTCGGTCCTTGTGGAAGATATAAAAATAGGATCAACTGACAAAATGTTAATAATAAAATCAAAATATTTTGTCAGGAAGTCACTTTTTGATATCTTTCACTGGAATTGAGTTATATGGGCTCAAAGTTGGAGGGTTGTGAAGCTTTCCATTATAGTGTTTATTGTCACCTTTGAGATAAATTATATCATTTTCTGCGCAAGTTATCAAAAAGTAGTCTACAGACAAAATGTTTATCGCAATATCAAAAATGTTTTGTCAGTTGATAACTTTTTGATACGTCTTACAGGAATCAAGTTACATGGGCTCAAAGAAAGTTGGAACTTTTTGTCTGAGGAAATGCCCTGCTGCTGCACCTGCTCCCTGATTTTTGACACCTCTTTTCTTCTTTTCCTGAAGTAGATCAGAAACAAAAGATGGATAGGTCCGCCTCACAAAAGGGGGGAGAGGTGTTCGTTGCGCGATCAGGCGGATTAAATTTAAGAAGAAGAAGAAGAAAAGGGTGGTCAATTGGGGGGGGGGGGGGGGGAGGCAGCAGCCAGCAGCGCGCCGAAAGACCACATTTTGACGTGCTAATAAATCATGTTAGTGTGATTGACTTCCGGAGAGTAAAACACTACTTTCCCACCTGTGCCCTTTTTTGAGATGGCCGTTAAAACATATAGTCTATTCATCTTTAAAATCTAG</canonical>
            <polymorphic>GCGAGAGAAAGTTGGGCAAACATATGACCTCTCGGAAGAAAAGAAGAAGAAGAAAATGAAGGCAAACCATGGTGTAACAAGAAAATGGTGGGGGTAGTAAATCTGAGGGACCACTCCACTTTTTTGGAGTTGAGTTATGATTTTGGAACGCAAAAGTGCATCTTCTTCTTTTTGTTTTAATGAGAAATATCTAAAGATCTAGAAGATTACGGAAGAGGATAGAAGAGGATTTTTAGTTTTTTTTTCAGATGAGAGAAAAGATGAGAAGAGGGACACGCCCCTTTGAAGGCCACCTACAACTTTGACCCCATATATCTCGGTCCTTGTGGAAGATATAAAAATAGGATCAACTGACAAAATGTTAATAATAAAATCAAAATATTTTGTCAGGAAGTCACTTTTTGATATCTTTCACTGGAATTGAGTTATATGGGCTCAAAGTTGGAGGGTTGTGAAGCTTTCCATTATAGTGTTTATTGTCACCTTTGAGATAAATTATMTCATTTTCTGCGCAAGTTATCAAAAAGTAGTCTACAGACAAAATGTTTATCGCAATATCAAAAATGTTTTGTCAGTTGATAACTTTTTGATACGTCTTACAGGAATCAAGTTACATGGGCTCAAAGAAAGTTGGAACTTTTTGTCTGAGGAAATGCCCTGCTGCTGCACCTGCTCCCTGATTTTTGACACCTCTTTTCTTCTTTTCCTGAAGTAGATCAGAAACAAAAGATGGATAGGTCCGCCTCACAAAAGGGGGGAGAGGTGTTCGTTGCGCGATCAGGCGGATTAAATTTAAGAAGAAGAAGAAGAAAAGGGTGGTCAATTGGGGGGGGGGGGGGGGGAGGCAGCAGCCAGCAGCGCGCCGAAAGACCACATTTTGACGTGCTAATAAATCATGTTAGTGTGATTGACTTCCGGAGAGTAAAACACTACTTTCCCACCTGTGCCCTTTTTTGAGATGGCCGTTAAAACATATAGTCTATTCATCTTTAAAATCTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGATGAGAAGAGGGACAC</pcr_primer_p1>
		<pcr_primer_p2>GCATTTCCTCAGACAAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>401</pcr_amplicon_size>
		<canonical_amplicon>AAAAGATGAGAAGAGGGACACGCCCCTTTGAAGGCCACCTACAACTTTGACCCCATATATCTCGGTCCTTGTGGAAGATATAAAAATAGGATCAACTGACAAAATGTTAATAATAAAATCAAAATATTTTGTCAGGAAGTCACTTTTTGATATCTTTCACTGGAATTGAGTTATATGGGCTCAAAGTTGGAGGGTTGTGAAGCTTTCCATTATAGTGTTTATTGTCACCTTTGAGATAAATTATATCATTTTCTGCGCAAGTTATCAAAAAGTAGTCTACAGACAAAATGTTTATCGCAATATCAAAAATGTTTTGTCAGTTGATAACTTTTTGATACGTCTTACAGGAATCAAGTTACATGGGCTCAAAGAAAGTTGGAACTTTTTGTCTGAGGAAATGC</canonical_amplicon>
		<polymorphic_amplicon>AAAAGATGAGAAGAGGGACACGCCCCTTTGAAGGCCACCTACAACTTTGACCCCATATATCTCGGTCCTTGTGGAAGATATAAAAATAGGATCAACTGACAAAATGTTAATAATAAAATCAAAATATTTTGTCAGGAAGTCACTTTTTGATATCTTTCACTGGAATTGAGTTATATGGGCTCAAAGTTGGAGGGTTGTGAAGCTTTCCATTATAGTGTTTATTGTCACCTTTGAGATAAATTATMTCATTTTCTGCGCAAGTTATCAAAAAGTAGTCTACAGACAAAATGTTTATCGCAATATCAAAAATGTTTTGTCAGTTGATAACTTTTTGATACGTCTTACAGGAATCAAGTTACATGGGCTCAAAGAAAGTTGGAACTTTTTGTCTGAGGAAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33777</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>351674</contig_pos>
        <strand></strand>
        <context>tatcaaaaat[G/A]ttttgtcagt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTTATCAAAAAGTAGTCTACAGACAAAATGTTTATCGCAATATCAAAAAT</left_flank>
        <right_flank>TTTTGTCAGTTGATAACTTTTTGATACGTCTTACAGGAATCAAGTTACAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATGGTGTAACAAGAAAATGGTGGGGGTAGTAAATCTGAGGGACCACTCCACTTTTTTGGAGTTGAGTTATGATTTTGGAACGCAAAAGTGCATCTTCTTCTTTTTGTTTTAATGAGAAATATCTAAAGATCTAGAAGATTACGGAAGAGGATAGAAGAGGATTTTTAGTTTTTTTTTCAGATGAGAGAAAAGATGAGAAGAGGGACACGCCCCTTTGAAGGCCACCTACAACTTTGACCCCATATATCTCGGTCCTTGTGGAAGATATAAAAATAGGATCAACTGACAAAATGTTAATAATAAAATCAAAATATTTTGTCAGGAAGTCACTTTTTGATATCTTTCACTGGAATTGAGTTATATGGGCTCAAAGTTGGAGGGTTGTGAAGCTTTCCATTATAGTGTTTATTGTCACCTTTGAGATAAATTATATCATTTTCTGCGCAAGTTATCAAAAAGTAGTCTACAGACAAAATGTTTATCGCAATATCAAAAATGTTTTGTCAGTTGATAACTTTTTGATACGTCTTACAGGAATCAAGTTACATGGGCTCAAAGAAAGTTGGAACTTTTTGTCTGAGGAAATGCCCTGCTGCTGCACCTGCTCCCTGATTTTTGACACCTCTTTTCTTCTTTTCCTGAAGTAGATCAGAAACAAAAGATGGATAGGTCCGCCTCACAAAAGGGGGGAGAGGTGTTCGTTGCGCGATCAGGCGGATTAAATTTAAGAAGAAGAAGAAGAAAAGGGTGGTCAATTGGGGGGGGGGGGGGGGGAGGCAGCAGCCAGCAGCGCGCCGAAAGACCACATTTTGACGTGCTAATAAATCATGTTAGTGTGATTGACTTCCGGAGAGTAAAACACTACTTTCCCACCTGTGCCCTTTTTTGAGATGGCCGTTAAAACATATAGTCTATTCATCTTTAAAATCTAGAATAGAGTCTGATCTTTGAATGTCACATCATGTTGTTTTTTTTTCAGCTCTTCAGCCATCTTTTCT</canonical>
            <polymorphic>CCATGGTGTAACAAGAAAATGGTGGGGGTAGTAAATCTGAGGGACCACTCCACTTTTTTGGAGTTGAGTTATGATTTTGGAACGCAAAAGTGCATCTTCTTCTTTTTGTTTTAATGAGAAATATCTAAAGATCTAGAAGATTACGGAAGAGGATAGAAGAGGATTTTTAGTTTTTTTTTCAGATGAGAGAAAAGATGAGAAGAGGGACACGCCCCTTTGAAGGCCACCTACAACTTTGACCCCATATATCTCGGTCCTTGTGGAAGATATAAAAATAGGATCAACTGACAAAATGTTAATAATAAAATCAAAATATTTTGTCAGGAAGTCACTTTTTGATATCTTTCACTGGAATTGAGTTATATGGGCTCAAAGTTGGAGGGTTGTGAAGCTTTCCATTATAGTGTTTATTGTCACCTTTGAGATAAATTATATCATTTTCTGCGCAAGTTATCAAAAAGTAGTCTACAGACAAAATGTTTATCGCAATATCAAAAATRTTTTGTCAGTTGATAACTTTTTGATACGTCTTACAGGAATCAAGTTACATGGGCTCAAAGAAAGTTGGAACTTTTTGTCTGAGGAAATGCCCTGCTGCTGCACCTGCTCCCTGATTTTTGACACCTCTTTTCTTCTTTTCCTGAAGTAGATCAGAAACAAAAGATGGATAGGTCCGCCTCACAAAAGGGGGGAGAGGTGTTCGTTGCGCGATCAGGCGGATTAAATTTAAGAAGAAGAAGAAGAAAAGGGTGGTCAATTGGGGGGGGGGGGGGGGGAGGCAGCAGCCAGCAGCGCGCCGAAAGACCACATTTTGACGTGCTAATAAATCATGTTAGTGTGATTGACTTCCGGAGAGTAAAACACTACTTTCCCACCTGTGCCCTTTTTTGAGATGGCCGTTAAAACATATAGTCTATTCATCTTTAAAATCTAGAATAGAGTCTGATCTTTGAATGTCACATCATGTTGTTTTTTTTTCAGCTCTTCAGCCATCTTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGATGAGAAGAGGGACAC</pcr_primer_p1>
		<pcr_primer_p2>GCATTTCCTCAGACAAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>401</pcr_amplicon_size>
		<canonical_amplicon>AAAAGATGAGAAGAGGGACACGCCCCTTTGAAGGCCACCTACAACTTTGACCCCATATATCTCGGTCCTTGTGGAAGATATAAAAATAGGATCAACTGACAAAATGTTAATAATAAAATCAAAATATTTTGTCAGGAAGTCACTTTTTGATATCTTTCACTGGAATTGAGTTATATGGGCTCAAAGTTGGAGGGTTGTGAAGCTTTCCATTATAGTGTTTATTGTCACCTTTGAGATAAATTATATCATTTTCTGCGCAAGTTATCAAAAAGTAGTCTACAGACAAAATGTTTATCGCAATATCAAAAATGTTTTGTCAGTTGATAACTTTTTGATACGTCTTACAGGAATCAAGTTACATGGGCTCAAAGAAAGTTGGAACTTTTTGTCTGAGGAAATGC</canonical_amplicon>
		<polymorphic_amplicon>AAAAGATGAGAAGAGGGACACGCCCCTTTGAAGGCCACCTACAACTTTGACCCCATATATCTCGGTCCTTGTGGAAGATATAAAAATAGGATCAACTGACAAAATGTTAATAATAAAATCAAAATATTTTGTCAGGAAGTCACTTTTTGATATCTTTCACTGGAATTGAGTTATATGGGCTCAAAGTTGGAGGGTTGTGAAGCTTTCCATTATAGTGTTTATTGTCACCTTTGAGATAAATTATATCATTTTCTGCGCAAGTTATCAAAAAGTAGTCTACAGACAAAATGTTTATCGCAATATCAAAAATRTTTTGTCAGTTGATAACTTTTTGATACGTCTTACAGGAATCAAGTTACATGGGCTCAAAGAAAGTTGGAACTTTTTGTCTGAGGAAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33778</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>351781</contig_pos>
        <strand>+</strand>
        <context>GCTGCACCTG[C/T]TCCCTGATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGAAAGTTGGAACTTTTTGTCTGAGGAAATGCCCTGCTGCTGCACCTG</left_flank>
        <right_flank>TCCCTGATTTTTGACACCTCTTTTCTTCTTTTCCTGAAGTAGATCAGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTAATGAGAAATATCTAAAGATCTAGAAGATTACGGAAGAGGATAGAAGAGGATTTTTAGTTTTTTTTTCAGATGAGAGAAAAGATGAGAAGAGGGACACGCCCCTTTGAAGGCCACCTACAACTTTGACCCCATATATCTCGGTCCTTGTGGAAGATATAAAAATAGGATCAACTGACAAAATGTTAATAATAAAATCAAAATATTTTGTCAGGAAGTCACTTTTTGATATCTTTCACTGGAATTGAGTTATATGGGCTCAAAGTTGGAGGGTTGTGAAGCTTTCCATTATAGTGTTTATTGTCACCTTTGAGATAAATTATATCATTTTCTGCGCAAGTTATCAAAAAGTAGTCTACAGACAAAATGTTTATCGCAATATCAAAAATGTTTTGTCAGTTGATAACTTTTTGATACGTCTTACAGGAATCAAGTTACATGGGCTCAAAGAAAGTTGGAACTTTTTGTCTGAGGAAATGCCCTGCTGCTGCACCTGCTCCCTGATTTTTGACACCTCTTTTCTTCTTTTCCTGAAGTAGATCAGAAACAAAAGATGGATAGGTCCGCCTCACAAAAGGGGGGAGAGGTGTTCGTTGCGCGATCAGGCGGATTAAATTTAAGAAGAAGAAGAAGAAAAGGGTGGTCAATTGGGGGGGGGGGGGGGGGAGGCAGCAGCCAGCAGCGCGCCGAAAGACCACATTTTGACGTGCTAATAAATCATGTTAGTGTGATTGACTTCCGGAGAGTAAAACACTACTTTCCCACCTGTGCCCTTTTTTGAGATGGCCGTTAAAACATATAGTCTATTCATCTTTAAAATCTAGAATAGAGTCTGATCTTTGAATGTCACATCATGTTGTTTTTTTTTCAGCTCTTCAGCCATCTTTTCTTTCCTTCAGATTTTTTTGTCTCCAATTTTCAAAAGTTGCCTTAAAAGTTCACATCCTGATTGGATCCATCTACATCTTCCCATTCAACTTCCGTCTTTTCCGACAGC</canonical>
            <polymorphic>GTTTTAATGAGAAATATCTAAAGATCTAGAAGATTACGGAAGAGGATAGAAGAGGATTTTTAGTTTTTTTTTCAGATGAGAGAAAAGATGAGAAGAGGGACACGCCCCTTTGAAGGCCACCTACAACTTTGACCCCATATATCTCGGTCCTTGTGGAAGATATAAAAATAGGATCAACTGACAAAATGTTAATAATAAAATCAAAATATTTTGTCAGGAAGTCACTTTTTGATATCTTTCACTGGAATTGAGTTATATGGGCTCAAAGTTGGAGGGTTGTGAAGCTTTCCATTATAGTGTTTATTGTCACCTTTGAGATAAATTATATCATTTTCTGCGCAAGTTATCAAAAAGTAGTCTACAGACAAAATGTTTATCGCAATATCAAAAATGTTTTGTCAGTTGATAACTTTTTGATACGTCTTACAGGAATCAAGTTACATGGGCTCAAAGAAAGTTGGAACTTTTTGTCTGAGGAAATGCCCTGCTGCTGCACCTGYTCCCTGATTTTTGACACCTCTTTTCTTCTTTTCCTGAAGTAGATCAGAAACAAAAGATGGATAGGTCCGCCTCACAAAAGGGGGGAGAGGTGTTCGTTGCGCGATCAGGCGGATTAAATTTAAGAAGAAGAAGAAGAAAAGGGTGGTCAATTGGGGGGGGGGGGGGGGGAGGCAGCAGCCAGCAGCGCGCCGAAAGACCACATTTTGACGTGCTAATAAATCATGTTAGTGTGATTGACTTCCGGAGAGTAAAACACTACTTTCCCACCTGTGCCCTTTTTTGAGATGGCCGTTAAAACATATAGTCTATTCATCTTTAAAATCTAGAATAGAGTCTGATCTTTGAATGTCACATCATGTTGTTTTTTTTTCAGCTCTTCAGCCATCTTTTCTTTCCTTCAGATTTTTTTGTCTCCAATTTTCAAAAGTTGCCTTAAAAGTTCACATCCTGATTGGATCCATCTACATCTTCCCATTCAACTTCCGTCTTTTCCGACAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>496 316 188</canonical_bands>
                <polymorphic_bands>684 316</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGATGAGAAGAGGGACAC</pcr_primer_p1>
		<pcr_primer_p2>TCCATCTTTTGTTTCTGATCTAC</pcr_primer_p2>
		<pcr_amplicon_size>479</pcr_amplicon_size>
		<canonical_amplicon>AAAAGATGAGAAGAGGGACACGCCCCTTTGAAGGCCACCTACAACTTTGACCCCATATATCTCGGTCCTTGTGGAAGATATAAAAATAGGATCAACTGACAAAATGTTAATAATAAAATCAAAATATTTTGTCAGGAAGTCACTTTTTGATATCTTTCACTGGAATTGAGTTATATGGGCTCAAAGTTGGAGGGTTGTGAAGCTTTCCATTATAGTGTTTATTGTCACCTTTGAGATAAATTATATCATTTTCTGCGCAAGTTATCAAAAAGTAGTCTACAGACAAAATGTTTATCGCAATATCAAAAATGTTTTGTCAGTTGATAACTTTTTGATACGTCTTACAGGAATCAAGTTACATGGGCTCAAAGAAAGTTGGAACTTTTTGTCTGAGGAAATGCCCTGCTGCTGCACCTGCTCCCTGATTTTTGACACCTCTTTTCTTCTTTTCCTGAAGTAGATCAGAAACAAAAGATGGA</canonical_amplicon>
		<polymorphic_amplicon>AAAAGATGAGAAGAGGGACACGCCCCTTTGAAGGCCACCTACAACTTTGACCCCATATATCTCGGTCCTTGTGGAAGATATAAAAATAGGATCAACTGACAAAATGTTAATAATAAAATCAAAATATTTTGTCAGGAAGTCACTTTTTGATATCTTTCACTGGAATTGAGTTATATGGGCTCAAAGTTGGAGGGTTGTGAAGCTTTCCATTATAGTGTTTATTGTCACCTTTGAGATAAATTATATCATTTTCTGCGCAAGTTATCAAAAAGTAGTCTACAGACAAAATGTTTATCGCAATATCAAAAATGTTTTGTCAGTTGATAACTTTTTGATACGTCTTACAGGAATCAAGTTACATGGGCTCAAAGAAAGTTGGAACTTTTTGTCTGAGGAAATGCCCTGCTGCTGCACCTGYTCCCTGATTTTTGACACCTCTTTTCTTCTTTTCCTGAAGTAGATCAGAAACAAAAGATGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33779</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>353641</contig_pos>
        <strand></strand>
        <context>ttttcggcat[T/C]gaaattaaac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAGATTTTGCTACCGGACCTAAGCTCCGCCCACCTCCGAATTTTCGGCAT</left_flank>
        <right_flank>GAAATTAAACCAGAGAATAGATTTTTTCAGAGCATCTGTTGAGCTTTGAC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTTGGGTGCCCGTCTATTTGAGTGTTTACGGTATTTTGATTTTTGACAAAACTTTCAGATACACGTATTACTCTGGTCTAATTTCAACTCCGAAAATTTGAGGGTGGACTTGAATGACGTACTTTCACCCTTTTCGTGTACTACGGTAGATGGATTACGGGAAAATGAAAGTGGCATACAGACCGAATAATAGATTGTGTTTTCTGGAAACAGAAATCTCGAATTTTTCCCAGAACCAAAGTATCAAACAAAGTGACACACGTGATAAGGGGAATTGATGAATGGCTTTTTTTGATAAGATTAAATGACTAGATTATATCGGCGCGACCCGACAATAAACGAACTGAAATAGAATTCAGTTATTGCAAGTNNNNNNNNNNTCACAGAAATCCGAAAAATCGAAAAAAAGGCCGAAACATAATTGCGAAAATGCATGCTGCGCCTTCAAAGATTTTGCTACCGGACCTAAGCTCCGCCCACCTCCGAATTTTCGGCATTGAAATTAAACCAGAGAATAGATTTTTTCAGAGCATCTGTTGAGCTTTGACGGCTAGATTATTTAGATATTTGAAAAAGTGATATTTTTGCCAAACCAGATGCACGTAGATAGGTCTTATTTCAGGAAAGACAACGCATAATCGTTCTAAAATATATATATTTAAAGAGCTTTGTGCAATACTCTAGGTCTTTGAGCTTAGTAAGTAAATTTTCCAGCTGCTTTTCTTTATATATCGGATCATAAGAGAGAAAAAAAATACGTCTCAAATTCATAAATTCATCTTCCTGTAGATTATTTTCCTCCTTCTTCTTTTTTCTGTGTAATCTTGAAAACATATGTCTATCTGTTTGCAGCTGTGTTGTGATGTACTTAAACCTAATGATAACACACAAAAGCAAACAAAAAAGATTATCAGTGGTTATTAGTTGCGGTCCCAATGTAATTCATTCAGAAATTAGGGGGTTTACCGCCTTCTCTCGGCCGAGAACATTTGTTCAAA</canonical>
            <polymorphic>GGCTTGGGTGCCCGTCTATTTGAGTGTTTACGGTATTTTGATTTTTGACAAAACTTTCAGATACACGTATTACTCTGGTCTAATTTCAACTCCGAAAATTTGAGGGTGGACTTGAATGACGTACTTTCACCCTTTTCGTGTACTACGGTAGATGGATTACGGGAAAATGAAAGTGGCATACAGACCGAATAATAGATTGTGTTTTCTGGAAACAGAAATCTCGAATTTTTCCCAGAACCAAAGTATCAAACAAAGTGACACACGTGATAAGGGGAATTGATGAATGGCTTTTTTTGATAAGATTAAATGACTAGATTATATCGGCGCGACCCGACAATAAACGAACTGAAATAGAATTCAGTTATTGCAAGTNNNNNNNNNNTCACAGAAATCCGAAAAATCGAAAAAAAGGCCGAAACATAATTGCGAAAATGCATGCTGCGCCTTCAAAGATTTTGCTACCGGACCTAAGCTCCGCCCACCTCCGAATTTTCGGCATYGAAATTAAACCAGAGAATAGATTTTTTCAGAGCATCTGTTGAGCTTTGACGGCTAGATTATTTAGATATTTGAAAAAGTGATATTTTTGCCAAACCAGATGCACGTAGATAGGTCTTATTTCAGGAAAGACAACGCATAATCGTTCTAAAATATATATATTTAAAGAGCTTTGTGCAATACTCTAGGTCTTTGAGCTTAGTAAGTAAATTTTCCAGCTGCTTTTCTTTATATATCGGATCATAAGAGAGAAAAAAAATACGTCTCAAATTCATAAATTCATCTTCCTGTAGATTATTTTCCTCCTTCTTCTTTTTTCTGTGTAATCTTGAAAACATATGTCTATCTGTTTGCAGCTGTGTTGTGATGTACTTAAACCTAATGATAACACACAAAAGCAAACAAAAAAGATTATCAGTGGTTATTAGTTGCGGTCCCAATGTAATTCATTCAGAAATTAGGGGGTTTACCGCCTTCTCTCGGCCGAGAACATTTGTTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGACAATAAACGAACTGAAATAG</pcr_primer_p1>
		<pcr_primer_p2>TCTAAATAATCTAGCCGTCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>CGACAATAAACGAACTGAAATAGAATTCAGTTATTGCAAGTNNNNNNNNNNTCACAGAAATCCGAAAAATCGAAAAAAAGGCCGAAACATAATTGCGAAAATGCATGCTGCGCCTTCAAAGATTTTGCTACCGGACCTAAGCTCCGCCCACCTCCGAATTTTCGGCATTGAAATTAAACCAGAGAATAGATTTTTTCAGAGCATCTGTTGAGCTTTGACGGCTAGATTATTTAGA</canonical_amplicon>
		<polymorphic_amplicon>CGACAATAAACGAACTGAAATAGAATTCAGTTATTGCAAGTNNNNNNNNNNTCACAGAAATCCGAAAAATCGAAAAAAAGGCCGAAACATAATTGCGAAAATGCATGCTGCGCCTTCAAAGATTTTGCTACCGGACCTAAGCTCCGCCCACCTCCGAATTTTCGGCATYGAAATTAAACCAGAGAATAGATTTTTTCAGAGCATCTGTTGAGCTTTGACGGCTAGATTATTTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33780</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>377178</contig_pos>
        <strand></strand>
        <context>agttgacgct[C/T]tggatatgct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTACATTTTTTTATAGGAATTAAGATAATTGAGCTCAAAGTTGACGCT</left_flank>
        <right_flank>TGGATATGCTTCTATTAAGGAGATACGGTAACGTGTAATAGGAGGGCCCC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGGATCTCCAGTACCACCTCCTTAGAATACAACCTGTTACTTCCCCAGCTATCCTTCGATTATGCTGGGAATAAACTTGATTTTCAAAGTCTTTGTAAGTTTTGCTCTTTTTTCCGTATTTTATGATTTCAATTTCTGTCCACAGGGACTGTTTCTGGCAGTTGCCGGACAACAACCAGCACCCAACAATGGAGAAATCCTGATGCCAACTGATGAACCATTTAACATGCTAAAAGGAGAATATCAACTCGATGTCAATGAAATGTGAGTCTTAATTTTAAATATTGTACTTTTTTAACAAGACAAACACCATGTAACTTGTAGTAGGAGTGCCCCGCACTGTCAAGTTTAAACTTGATTATCTCAATTTCTATGCAAGATATAACAATTGTGTTAACTAATAAATTGTTATCATAACATTACCAATATTTTATCAGTTGACACATTTTTTACATTTTTTTATAGGAATTAAGATAATTGAGCTCAAAGTTGACGCTCTGGATATGCTTCTATTAAGGAGATACGGTAACGTGTAATAGGAGGGCCCCACACTGTCAACTTCGAGCCAATTTATCTCAGCTCCTGTGAAAGATAACAAAAATGTGTCAACTGATAAAATATTTCTGATATTTTGACAAACAGCTTATCAGTTGAAAACTTTTTCATTTCTTTAACAGAAACCAAAATAAATTAGCTCAAAGTTATTTTACGATACATTTTTTTGGGGTCAAAGGTCAAATGCAAATGAGACTTTTATAAGTTTTTAGTTACTGACAAAGATTTTAAGGAGTAACTACCGTCCAACATGGGCTTCTGTATGGAAAATCACTCAGAACGATGTGAACAACGAGATTTTTTACATCTCCACATGGCCACCAAAGTATTGTCATGGGTAACTGTCTCTGGTCTGTAATTTCCAGACCATCCCTTTTTTCAGAATTTATATTTGCCCATTGATAAAACAGGACTACCATGACACAAACAACTTCAAAACAGTT</canonical>
            <polymorphic>TCAGGATCTCCAGTACCACCTCCTTAGAATACAACCTGTTACTTCCCCAGCTATCCTTCGATTATGCTGGGAATAAACTTGATTTTCAAAGTCTTTGTAAGTTTTGCTCTTTTTTCCGTATTTTATGATTTCAATTTCTGTCCACAGGGACTGTTTCTGGCAGTTGCCGGACAACAACCAGCACCCAACAATGGAGAAATCCTGATGCCAACTGATGAACCATTTAACATGCTAAAAGGAGAATATCAACTCGATGTCAATGAAATGTGAGTCTTAATTTTAAATATTGTACTTTTTTAACAAGACAAACACCATGTAACTTGTAGTAGGAGTGCCCCGCACTGTCAAGTTTAAACTTGATTATCTCAATTTCTATGCAAGATATAACAATTGTGTTAACTAATAAATTGTTATCATAACATTACCAATATTTTATCAGTTGACACATTTTTTACATTTTTTTATAGGAATTAAGATAATTGAGCTCAAAGTTGACGCTYTGGATATGCTTCTATTAAGGAGATACGGTAACGTGTAATAGGAGGGCCCCACACTGTCAACTTCGAGCCAATTTATCTCAGCTCCTGTGAAAGATAACAAAAATGTGTCAACTGATAAAATATTTCTGATATTTTGACAAACAGCTTATCAGTTGAAAACTTTTTCATTTCTTTAACAGAAACCAAAATAAATTAGCTCAAAGTTATTTTACGATACATTTTTTTGGGGTCAAAGGTCAAATGCAAATGAGACTTTTATAAGTTTTTAGTTACTGACAAAGATTTTAAGGAGTAACTACCGTCCAACATGGGCTTCTGTATGGAAAATCACTCAGAACGATGTGAACAACGAGATTTTTTACATCTCCACATGGCCACCAAAGTATTGTCATGGGTAACTGTCTCTGGTCTGTAATTTCCAGACCATCCCTTTTTTCAGAATTTATATTTGCCCATTGATAAAACAGGACTACCATGACACAAACAACTTCAAAACAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>419 299 199 81 2</canonical_bands>
                <polymorphic_bands>718 199 81 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTCAATGAAATGTGAGTCTTAAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTGCATTTGACCTTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>494</pcr_amplicon_size>
		<canonical_amplicon>TGTCAATGAAATGTGAGTCTTAATTTTAAATATTGTACTTTTTTAACAAGACAAACACCATGTAACTTGTAGTAGGAGTGCCCCGCACTGTCAAGTTTAAACTTGATTATCTCAATTTCTATGCAAGATATAACAATTGTGTTAACTAATAAATTGTTATCATAACATTACCAATATTTTATCAGTTGACACATTTTTTACATTTTTTTATAGGAATTAAGATAATTGAGCTCAAAGTTGACGCTCTGGATATGCTTCTATTAAGGAGATACGGTAACGTGTAATAGGAGGGCCCCACACTGTCAACTTCGAGCCAATTTATCTCAGCTCCTGTGAAAGATAACAAAAATGTGTCAACTGATAAAATATTTCTGATATTTTGACAAACAGCTTATCAGTTGAAAACTTTTTCATTTCTTTAACAGAAACCAAAATAAATTAGCTCAAAGTTATTTTACGATACATTTTTTTGGGGTCAAAGGTCAAATGCAAAT</canonical_amplicon>
		<polymorphic_amplicon>TGTCAATGAAATGTGAGTCTTAATTTTAAATATTGTACTTTTTTAACAAGACAAACACCATGTAACTTGTAGTAGGAGTGCCCCGCACTGTCAAGTTTAAACTTGATTATCTCAATTTCTATGCAAGATATAACAATTGTGTTAACTAATAAATTGTTATCATAACATTACCAATATTTTATCAGTTGACACATTTTTTACATTTTTTTATAGGAATTAAGATAATTGAGCTCAAAGTTGACGCTYTGGATATGCTTCTATTAAGGAGATACGGTAACGTGTAATAGGAGGGCCCCACACTGTCAACTTCGAGCCAATTTATCTCAGCTCCTGTGAAAGATAACAAAAATGTGTCAACTGATAAAATATTTCTGATATTTTGACAAACAGCTTATCAGTTGAAAACTTTTTCATTTCTTTAACAGAAACCAAAATAAATTAGCTCAAAGTTATTTTACGATACATTTTTTTGGGGTCAAAGGTCAAATGCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33781</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>423679</contig_pos>
        <strand>+</strand>
        <context>AAGCTAAAAA[A/T]TGGAAAATct</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCAGGTCACGACCTAACATTTTGGCTGGAGTCCCCCTATAAGCTAAAAA</left_flank>
        <right_flank>TGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAA</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGACCTATATTTTACATTTTCAGGTCATGACCTATATTAACAACTTTTAGGTCGTTACATAATTTTTGGAATCTAGGTCACGACCTAAATTTCAATTTTCAGGCCATGACCTAGATTTCAAAATATAGACCATGCACTAAATTTTGAATTTTTCAGGTAGTGACTTATTTTTTGGAATTGGATCATGACCTAGATTCCAATTTTTCAATTTCCGGTCACGACCTCGTTTTTAGTTTTTACGTTTTCGCCAAGATTTAATTTTCTAAGCCATGACCTAGTTTTCAATTTTTCGGCCGTGATCTAGATTTCGGTTTCTAGGTCATGGGCGGATACGAGTTTCTAGATCATCAACTGAATTTTAATTTTCATGTTTTGACCTAAAATGTCGATTTTTTGTGACCCAGTTTTCTATTTTTAGGTCATGGCCTAGTTTTCATTTATTGGGTTTCCAGGTCACGACCTAACATTTTGGCTGGAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATTCTCAATTTTTTTCATCCTAACTTTTCCTGGTCTGATGGTTAAAGAACTTTCTAGCAGTGATGAATGGCTGATAACGAGAGCAAGTTTCAAACATCTGACAAGATTTCCTTGTCCTTTTGTGACGACAACTCGTTATCCCATTGAAATCCTTTTGAGTAGTTTTGAAGAGGTTCCCCTCTTCTTCTTTTCTTTGACTCGATAAGAAGAAGAAGGATGTGTCAGGAGACAAATTAGATT</canonical>
            <polymorphic>TTTGACCTATATTTTACATTTTCAGGTCATGACCTATATTAACAACTTTTAGGTCGTTACATAATTTTTGGAATCTAGGTCACGACCTAAATTTCAATTTTCAGGCCATGACCTAGATTTCAAAATATAGACCATGCACTAAATTTTGAATTTTTCAGGTAGTGACTTATTTTTTGGAATTGGATCATGACCTAGATTCCAATTTTTCAATTTCCGGTCACGACCTCGTTTTTAGTTTTTACGTTTTCGCCAAGATTTAATTTTCTAAGCCATGACCTAGTTTTCAATTTTTCGGCCGTGATCTAGATTTCGGTTTCTAGGTCATGGGCGGATACGAGTTTCTAGATCATCAACTGAATTTTAATTTTCATGTTTTGACCTAAAATGTCGATTTTTTGTGACCCAGTTTTCTATTTTTAGGTCATGGCCTAGTTTTCATTTATTGGGTTTCCAGGTCACGACCTAACATTTTGGCTGGAGTCCCCCTATAAGCTAAAAAWTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATTCTCAATTTTTTTCATCCTAACTTTTCCTGGTCTGATGGTTAAAGAACTTTCTAGCAGTGATGAATGGCTGATAACGAGAGCAAGTTTCAAACATCTGACAAGATTTCCTTGTCCTTTTGTGACGACAACTCGTTATCCCATTGAAATCCTTTTGAGTAGTTTTGAAGAGGTTCCCCTCTTCTTCTTTTCTTTGACTCGATAAGAAGAAGAAGGATGTGTCAGGAGACAAATTAGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>225 135 83 71 62 55 50 46 37 29 27 27 25 24 23 21 11 9 8 7 7 6 6 6</canonical_bands>
                <polymorphic_bands>225 218 71 62 55 50 46 37 29 27 27 25 24 23 21 11 9 8 7 7 6 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGTAATAATATCCGAAAAATACA</pcr_primer_p1>
		<pcr_primer_p2>AATAGCAGGGACCTAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>924</pcr_amplicon_size>
		<canonical_amplicon>ATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATT</canonical_amplicon>
		<polymorphic_amplicon>AWTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33782</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>423736</contig_pos>
        <strand></strand>
        <context>aaaatggtgt[T/A]agctacaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGT</left_flank>
        <right_flank>AGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACATAATTTTTGGAATCTAGGTCACGACCTAAATTTCAATTTTCAGGCCATGACCTAGATTTCAAAATATAGACCATGCACTAAATTTTGAATTTTTCAGGTAGTGACTTATTTTTTGGAATTGGATCATGACCTAGATTCCAATTTTTCAATTTCCGGTCACGACCTCGTTTTTAGTTTTTACGTTTTCGCCAAGATTTAATTTTCTAAGCCATGACCTAGTTTTCAATTTTTCGGCCGTGATCTAGATTTCGGTTTCTAGGTCATGGGCGGATACGAGTTTCTAGATCATCAACTGAATTTTAATTTTCATGTTTTGACCTAAAATGTCGATTTTTTGTGACCCAGTTTTCTATTTTTAGGTCATGGCCTAGTTTTCATTTATTGGGTTTCCAGGTCACGACCTAACATTTTGGCTGGAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATTCTCAATTTTTTTCATCCTAACTTTTCCTGGTCTGATGGTTAAAGAACTTTCTAGCAGTGATGAATGGCTGATAACGAGAGCAAGTTTCAAACATCTGACAAGATTTCCTTGTCCTTTTGTGACGACAACTCGTTATCCCATTGAAATCCTTTTGAGTAGTTTTGAAGAGGTTCCCCTCTTCTTCTTTTCTTTGACTCGATAAGAAGAAGAAGGATGTGTCAGGAGACAAATTAGATTCGAGCCTTCGGCCCTGTGCTCCTCCCTTGGGTATTCACACTTTCTTCCATTTTCCGA</canonical>
            <polymorphic>TACATAATTTTTGGAATCTAGGTCACGACCTAAATTTCAATTTTCAGGCCATGACCTAGATTTCAAAATATAGACCATGCACTAAATTTTGAATTTTTCAGGTAGTGACTTATTTTTTGGAATTGGATCATGACCTAGATTCCAATTTTTCAATTTCCGGTCACGACCTCGTTTTTAGTTTTTACGTTTTCGCCAAGATTTAATTTTCTAAGCCATGACCTAGTTTTCAATTTTTCGGCCGTGATCTAGATTTCGGTTTCTAGGTCATGGGCGGATACGAGTTTCTAGATCATCAACTGAATTTTAATTTTCATGTTTTGACCTAAAATGTCGATTTTTTGTGACCCAGTTTTCTATTTTTAGGTCATGGCCTAGTTTTCATTTATTGGGTTTCCAGGTCACGACCTAACATTTTGGCTGGAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTWAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATTCTCAATTTTTTTCATCCTAACTTTTCCTGGTCTGATGGTTAAAGAACTTTCTAGCAGTGATGAATGGCTGATAACGAGAGCAAGTTTCAAACATCTGACAAGATTTCCTTGTCCTTTTGTGACGACAACTCGTTATCCCATTGAAATCCTTTTGAGTAGTTTTGAAGAGGTTCCCCTCTTCTTCTTTTCTTTGACTCGATAAGAAGAAGAAGGATGTGTCAGGAGACAAATTAGATTCGAGCCTTCGGCCCTGTGCTCCTCCCTTGGGTATTCACACTTTCTTCCATTTTCCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTCCCCCTATAAGCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATAGCAGGGACCTAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>286</pcr_amplicon_size>
		<canonical_amplicon>GAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATT</canonical_amplicon>
		<polymorphic_amplicon>GAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTWAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33783</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>423776</contig_pos>
        <strand></strand>
        <context>acccattttt[T/C]agttgacaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTT</left_flank>
        <right_flank>AGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCAGGCCATGACCTAGATTTCAAAATATAGACCATGCACTAAATTTTGAATTTTTCAGGTAGTGACTTATTTTTTGGAATTGGATCATGACCTAGATTCCAATTTTTCAATTTCCGGTCACGACCTCGTTTTTAGTTTTTACGTTTTCGCCAAGATTTAATTTTCTAAGCCATGACCTAGTTTTCAATTTTTCGGCCGTGATCTAGATTTCGGTTTCTAGGTCATGGGCGGATACGAGTTTCTAGATCATCAACTGAATTTTAATTTTCATGTTTTGACCTAAAATGTCGATTTTTTGTGACCCAGTTTTCTATTTTTAGGTCATGGCCTAGTTTTCATTTATTGGGTTTCCAGGTCACGACCTAACATTTTGGCTGGAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATTCTCAATTTTTTTCATCCTAACTTTTCCTGGTCTGATGGTTAAAGAACTTTCTAGCAGTGATGAATGGCTGATAACGAGAGCAAGTTTCAAACATCTGACAAGATTTCCTTGTCCTTTTGTGACGACAACTCGTTATCCCATTGAAATCCTTTTGAGTAGTTTTGAAGAGGTTCCCCTCTTCTTCTTTTCTTTGACTCGATAAGAAGAAGAAGGATGTGTCAGGAGACAAATTAGATTCGAGCCTTCGGCCCTGTGCTCCTCCCTTGGGTATTCACACTTTCTTCCATTTTCCGAACTTCTTTTCCTTTCTTTCCCTCGTTATGTATACTCCGTT</canonical>
            <polymorphic>TTTTCAGGCCATGACCTAGATTTCAAAATATAGACCATGCACTAAATTTTGAATTTTTCAGGTAGTGACTTATTTTTTGGAATTGGATCATGACCTAGATTCCAATTTTTCAATTTCCGGTCACGACCTCGTTTTTAGTTTTTACGTTTTCGCCAAGATTTAATTTTCTAAGCCATGACCTAGTTTTCAATTTTTCGGCCGTGATCTAGATTTCGGTTTCTAGGTCATGGGCGGATACGAGTTTCTAGATCATCAACTGAATTTTAATTTTCATGTTTTGACCTAAAATGTCGATTTTTTGTGACCCAGTTTTCTATTTTTAGGTCATGGCCTAGTTTTCATTTATTGGGTTTCCAGGTCACGACCTAACATTTTGGCTGGAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTYAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATTCTCAATTTTTTTCATCCTAACTTTTCCTGGTCTGATGGTTAAAGAACTTTCTAGCAGTGATGAATGGCTGATAACGAGAGCAAGTTTCAAACATCTGACAAGATTTCCTTGTCCTTTTGTGACGACAACTCGTTATCCCATTGAAATCCTTTTGAGTAGTTTTGAAGAGGTTCCCCTCTTCTTCTTTTCTTTGACTCGATAAGAAGAAGAAGGATGTGTCAGGAGACAAATTAGATTCGAGCCTTCGGCCCTGTGCTCCTCCCTTGGGTATTCACACTTTCTTCCATTTTCCGAACTTCTTTTCCTTTCTTTCCCTCGTTATGTATACTCCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTCCCCCTATAAGCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATAGCAGGGACCTAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>286</pcr_amplicon_size>
		<canonical_amplicon>GAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATT</canonical_amplicon>
		<polymorphic_amplicon>GAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTYAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33784</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>423816</contig_pos>
        <strand></strand>
        <context>tttttgagat[A/G]tgcgccttta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGAT</left_flank>
        <right_flank>TGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTAAATTTTGAATTTTTCAGGTAGTGACTTATTTTTTGGAATTGGATCATGACCTAGATTCCAATTTTTCAATTTCCGGTCACGACCTCGTTTTTAGTTTTTACGTTTTCGCCAAGATTTAATTTTCTAAGCCATGACCTAGTTTTCAATTTTTCGGCCGTGATCTAGATTTCGGTTTCTAGGTCATGGGCGGATACGAGTTTCTAGATCATCAACTGAATTTTAATTTTCATGTTTTGACCTAAAATGTCGATTTTTTGTGACCCAGTTTTCTATTTTTAGGTCATGGCCTAGTTTTCATTTATTGGGTTTCCAGGTCACGACCTAACATTTTGGCTGGAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATTCTCAATTTTTTTCATCCTAACTTTTCCTGGTCTGATGGTTAAAGAACTTTCTAGCAGTGATGAATGGCTGATAACGAGAGCAAGTTTCAAACATCTGACAAGATTTCCTTGTCCTTTTGTGACGACAACTCGTTATCCCATTGAAATCCTTTTGAGTAGTTTTGAAGAGGTTCCCCTCTTCTTCTTTTCTTTGACTCGATAAGAAGAAGAAGGATGTGTCAGGAGACAAATTAGATTCGAGCCTTCGGCCCTGTGCTCCTCCCTTGGGTATTCACACTTTCTTCCATTTTCCGAACTTCTTTTCCTTTCTTTCCCTCGTTATGTATACTCCGTTCTCTCTTCTATATCTATTCTCATGGTTCTGTCTAGTTGAT</canonical>
            <polymorphic>ACTAAATTTTGAATTTTTCAGGTAGTGACTTATTTTTTGGAATTGGATCATGACCTAGATTCCAATTTTTCAATTTCCGGTCACGACCTCGTTTTTAGTTTTTACGTTTTCGCCAAGATTTAATTTTCTAAGCCATGACCTAGTTTTCAATTTTTCGGCCGTGATCTAGATTTCGGTTTCTAGGTCATGGGCGGATACGAGTTTCTAGATCATCAACTGAATTTTAATTTTCATGTTTTGACCTAAAATGTCGATTTTTTGTGACCCAGTTTTCTATTTTTAGGTCATGGCCTAGTTTTCATTTATTGGGTTTCCAGGTCACGACCTAACATTTTGGCTGGAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATRTGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATTCTCAATTTTTTTCATCCTAACTTTTCCTGGTCTGATGGTTAAAGAACTTTCTAGCAGTGATGAATGGCTGATAACGAGAGCAAGTTTCAAACATCTGACAAGATTTCCTTGTCCTTTTGTGACGACAACTCGTTATCCCATTGAAATCCTTTTGAGTAGTTTTGAAGAGGTTCCCCTCTTCTTCTTTTCTTTGACTCGATAAGAAGAAGAAGGATGTGTCAGGAGACAAATTAGATTCGAGCCTTCGGCCCTGTGCTCCTCCCTTGGGTATTCACACTTTCTTCCATTTTCCGAACTTCTTTTCCTTTCTTTCCCTCGTTATGTATACTCCGTTCTCTCTTCTATATCTATTCTCATGGTTCTGTCTAGTTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTCCCCCTATAAGCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATAGCAGGGACCTAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>286</pcr_amplicon_size>
		<canonical_amplicon>GAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATT</canonical_amplicon>
		<polymorphic_amplicon>GAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATRTGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33785</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>423832</contig_pos>
        <strand>+</strand>
        <context>ctttaaagta[G/T]acaagctAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTA</left_flank>
        <right_flank>ACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAGGTAGTGACTTATTTTTTGGAATTGGATCATGACCTAGATTCCAATTTTTCAATTTCCGGTCACGACCTCGTTTTTAGTTTTTACGTTTTCGCCAAGATTTAATTTTCTAAGCCATGACCTAGTTTTCAATTTTTCGGCCGTGATCTAGATTTCGGTTTCTAGGTCATGGGCGGATACGAGTTTCTAGATCATCAACTGAATTTTAATTTTCATGTTTTGACCTAAAATGTCGATTTTTTGTGACCCAGTTTTCTATTTTTAGGTCATGGCCTAGTTTTCATTTATTGGGTTTCCAGGTCACGACCTAACATTTTGGCTGGAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATTCTCAATTTTTTTCATCCTAACTTTTCCTGGTCTGATGGTTAAAGAACTTTCTAGCAGTGATGAATGGCTGATAACGAGAGCAAGTTTCAAACATCTGACAAGATTTCCTTGTCCTTTTGTGACGACAACTCGTTATCCCATTGAAATCCTTTTGAGTAGTTTTGAAGAGGTTCCCCTCTTCTTCTTTTCTTTGACTCGATAAGAAGAAGAAGGATGTGTCAGGAGACAAATTAGATTCGAGCCTTCGGCCCTGTGCTCCTCCCTTGGGTATTCACACTTTCTTCCATTTTCCGAACTTCTTTTCCTTTCTTTCCCTCGTTATGTATACTCCGTTCTCTCTTCTATATCTATTCTCATGGTTCTGTCTAGTTGATGGGTGTTACAAATATC</canonical>
            <polymorphic>TTCAGGTAGTGACTTATTTTTTGGAATTGGATCATGACCTAGATTCCAATTTTTCAATTTCCGGTCACGACCTCGTTTTTAGTTTTTACGTTTTCGCCAAGATTTAATTTTCTAAGCCATGACCTAGTTTTCAATTTTTCGGCCGTGATCTAGATTTCGGTTTCTAGGTCATGGGCGGATACGAGTTTCTAGATCATCAACTGAATTTTAATTTTCATGTTTTGACCTAAAATGTCGATTTTTTGTGACCCAGTTTTCTATTTTTAGGTCATGGCCTAGTTTTCATTTATTGGGTTTCCAGGTCACGACCTAACATTTTGGCTGGAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAKACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATTCTCAATTTTTTTCATCCTAACTTTTCCTGGTCTGATGGTTAAAGAACTTTCTAGCAGTGATGAATGGCTGATAACGAGAGCAAGTTTCAAACATCTGACAAGATTTCCTTGTCCTTTTGTGACGACAACTCGTTATCCCATTGAAATCCTTTTGAGTAGTTTTGAAGAGGTTCCCCTCTTCTTCTTTTCTTTGACTCGATAAGAAGAAGAAGGATGTGTCAGGAGACAAATTAGATTCGAGCCTTCGGCCCTGTGCTCCTCCCTTGGGTATTCACACTTTCTTCCATTTTCCGAACTTCTTTTCCTTTCTTTCCCTCGTTATGTATACTCCGTTCTCTCTTCTATATCTATTCTCATGGTTCTGTCTAGTTGATGGGTGTTACAAATATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>498 436 66</canonical_bands>
                <polymorphic_bands>934 66</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTCCCCCTATAAGCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATAGCAGGGACCTAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>286</pcr_amplicon_size>
		<canonical_amplicon>GAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATT</canonical_amplicon>
		<polymorphic_amplicon>GAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAKACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33786</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>424154</contig_pos>
        <strand>+</strand>
        <context>ARAAGAAGAA[A/G]GATGTGTCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAAGAGGTTCCCCTCTTCTTCTTTTCTTTGACTCGATAAGAAGAAGAA</left_flank>
        <right_flank>GATGTGTCAGGAGACAAATTAGATTCGAGCCTTCGGCCCTGTGCTCCTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATTCTCAATTTTTTTCATCCTAACTTTTCCTGGTCTGATGGTTAAAGAACTTTCTAGCAGTGATGAATGGCTGATAACGAGAGCAAGTTTCAAACATCTGACAAGATTTCCTTGTCCTTTTGTGACGACAACTCGTTATCCCATTGAAATCCTTTTGAGTAGTTTTGAAGAGGTTCCCCTCTTCTTCTTTTCTTTGACTCGATAAGAAGAAGAAGGATGTGTCAGGAGACAAATTAGATTCGAGCCTTCGGCCCTGTGCTCCTCCCTTGGGTATTCACACTTTCTTCCATTTTCCGAACTTCTTTTCCTTTCTTTCCCTCGTTATGTATACTCCGTTCTCTCTTCTATATCTATTCTCATGGTTCTGTCTAGTTGATGGGTGTTACAAATATCCAAAAGGTGGAGGATTGTGGTTTCTGGGAACAAAAAAAAATAACAAAAAACATTTCAGAGAAGCGAAATCCATGCGAAGATTTGAGATGTGGTCCAGGCGAGGATTGTGTGGTGAACCAGATAAATGGGATTCTTCTCGCTCAATGCATCTGCCCGACTCAATGTCCAAATTATGGTGATTCGGTGGAATCTTCACCTGTCTGCTCGTCGCATGGTGTCGATTACCAATCTTCGTGTCATTTGAGACACCACGCTTGTGAATCAAAGACAAACATCACAGTCAAGTTTTATGGCAGATGTGGTGAGTCGGTGAACGTCGATG</canonical>
            <polymorphic>TGGAGTCCCCCTATAAGCTAAAAATTGGAAAATCTTTGAGCGCTTCTATCTCAAAAACTACTGTAGATATCAAAATGGTGTTAGCTACAAAAATGTAGATCTTAAAATTTTACCCATTTTTTAGTTGACAAATTGTTTCTGGCATTTTTAGTTTTTGAGATATGCGCCTTTAAAGTAGACAAGCTAATTGGTGTTTCCTAAATGGAAATTCGAATTTCCAGGGTCTGCGCTTTTATAATTTTTCTATAATTTGAAATTGCAAACACATATTTTTAGGTCCCTGCTATTCTCAATTTTTTTCATCCTAACTTTTCCTGGTCTGATGGTTAAAGAACTTTCTAGCAGTGATGAATGGCTGATAACGAGAGCAAGTTTCAAACATCTGACAAGATTTCCTTGTCCTTTTGTGACGACAACTCGTTATCCCATTGAAATCCTTTTGAGTAGTTTTGAAGAGGTTCCCCTCTTCTTCTTTTCTTTGACTCGATAAGAAGAAGAARGATGTGTCAGGAGACAAATTAGATTCGAGCCTTCGGCCCTGTGCTCCTCCCTTGGGTATTCACACTTTCTTCCATTTTCCGAACTTCTTTTCCTTTCTTTCCCTCGTTATGTATACTCCGTTCTCTCTTCTATATCTATTCTCATGGTTCTGTCTAGTTGATGGGTGTTACAAATATCCAAAAGGTGGAGGATTGTGGTTTCTGGGAACAAAAAAAAATAACAAAAAACATTTCAGAGAAGCGAAATCCATGCGAAGATTTGAGATGTGGTCCAGGCGAGGATTGTGTGGTGAACCAGATAAATGGGATTCTTCTCGCTCAATGCATCTGCCCGACTCAATGTCCAAATTATGGTGATTCGGTGGAATCTTCACCTGTCTGCTCGTCGCATGGTGTCGATTACCAATCTTCGTGTCATTTGAGACACCACGCTTGTGAATCAAAGACAAACATCACAGTCAAGTTTTATGGCAGATGTGGTGAGTCGGTGAACGTCGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAACTTTCTAGCAGTGATGA</pcr_primer_p1>
		<pcr_primer_p2>GAAAATGGAAGAAAGTGTGAATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAGAACTTTCTAGCAGTGATGAATGGCTGATAACGAGAGCAAGTTTCAAACATCTGACAAGATTTCCTTGTCCTTTTGTGACGACAACTCGTTATCCCATTGAAATCCTTTTGAGTAGTTTTGAAGAGGTTCCCCTCTTCTTCTTTTCTTTGACTCGATAAGAAGAAGAAGGATGTGTCAGGAGACAAATTAGATTCGAGCCTTCGGCCCTGTGCTCCTCCCTTGGGTATTCACACTTTCTTCCATTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAGAACTTTCTAGCAGTGATGAATGGCTGATAACGAGAGCAAGTTTCAAACATCTGACAAGATTTCCTTGTCCTTTTGTGACGACAACTCGTTATCCCATTGAAATCCTTTTGAGTAGTTTTGAAGAGGTTCCCCTCTTCTTCTTTTCTTTGACTCGATAAGAAGAAGAARGATGTGTCAGGAGACAAATTAGATTCGAGCCTTCGGCCCTGTGCTCCTCCCTTGGGTATTCACACTTTCTTCCATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33787</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>424798</contig_pos>
        <strand></strand>
        <context>aactgtatct[A/G]gtctatgaac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAAAACTTAATAAGTGCTACAAAATGATATTATTCGAAAAACTGTATCT</left_flank>
        <right_flank>GTCTATGAACAAAGTTACAGAAGAAGCGGATTAAAAACAGGCAGAGCGCG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTTCTGTCTAGTTGATGGGTGTTACAAATATCCAAAAGGTGGAGGATTGTGGTTTCTGGGAACAAAAAAAAATAACAAAAAACATTTCAGAGAAGCGAAATCCATGCGAAGATTTGAGATGTGGTCCAGGCGAGGATTGTGTGGTGAACCAGATAAATGGGATTCTTCTCGCTCAATGCATCTGCCCGACTCAATGTCCAAATTATGGTGATTCGGTGGAATCTTCACCTGTCTGCTCGTCGCATGGTGTCGATTACCAATCTTCGTGTCATTTGAGACACCACGCTTGTGAATCAAAGACAAACATCACAGTCAAGTTTTATGGCAGATGTGGTGAGTCGGTGAACGTCGATGAAACTTTTAGGAAACTTCAAGAATGCATGCAACCCGGGCCCTGTCATAGTTTCTTTCAGAATCAATATTTTTAGATAATCTAAACTTGATATGATAAAACTTAATAAGTGCTACAAAATGATATTATTCGAAAAACTGTATCTAGTCTATGAACAAAGTTACAGAAGAAGCGGATTAAAAACAGGCAGAGCGCGGCCCAGCCCGGATTGGCTACTTTATGGCTTGTAACTTTGTTCATAGACAAGTTGAAATTTTTAAACACTATCATTTCGTAGTACTCGTCAAGTTCTATTATAGCTAGTTTGGTTGGCCCAAAACATTAATTCTAAAATAAACTACGGCAGAGCCTGCAAAGGCGCACCAAATTTTAGATTTTCTAGGCTACCAACTAATTGAGCGAAATCAGAACGTTTCGAAACAAGTTTCAGGATTCGTATAGCTTCACGTTAGCTAACTTACATCCCCTTTAAGTTGGTCGCCTAGAAACCCAAACCTTCGGAACTCTAGGCCATCAATTTGGAAATGGTATAACTCGGTTCGAATTCGACAATATGTCAAGAACATTATGTCAAGACCAAAAGGTTTCAGATCCATGCCATGGCCACAAATGTCCAAATGGTCAGACGTGTCAGTTGGGAGTGGAT</canonical>
            <polymorphic>TGGTTCTGTCTAGTTGATGGGTGTTACAAATATCCAAAAGGTGGAGGATTGTGGTTTCTGGGAACAAAAAAAAATAACAAAAAACATTTCAGAGAAGCGAAATCCATGCGAAGATTTGAGATGTGGTCCAGGCGAGGATTGTGTGGTGAACCAGATAAATGGGATTCTTCTCGCTCAATGCATCTGCCCGACTCAATGTCCAAATTATGGTGATTCGGTGGAATCTTCACCTGTCTGCTCGTCGCATGGTGTCGATTACCAATCTTCGTGTCATTTGAGACACCACGCTTGTGAATCAAAGACAAACATCACAGTCAAGTTTTATGGCAGATGTGGTGAGTCGGTGAACGTCGATGAAACTTTTAGGAAACTTCAAGAATGCATGCAACCCGGGCCCTGTCATAGTTTCTTTCAGAATCAATATTTTTAGATAATCTAAACTTGATATGATAAAACTTAATAAGTGCTACAAAATGATATTATTCGAAAAACTGTATCTRGTCTATGAACAAAGTTACAGAAGAAGCGGATTAAAAACAGGCAGAGCGCGGCCCAGCCCGGATTGGCTACTTTATGGCTTGTAACTTTGTTCATAGACAAGTTGAAATTTTTAAACACTATCATTTCGTAGTACTCGTCAAGTTCTATTATAGCTAGTTTGGTTGGCCCAAAACATTAATTCTAAAATAAACTACGGCAGAGCCTGCAAAGGCGCACCAAATTTTAGATTTTCTAGGCTACCAACTAATTGAGCGAAATCAGAACGTTTCGAAACAAGTTTCAGGATTCGTATAGCTTCACGTTAGCTAACTTACATCCCCTTTAAGTTGGTCGCCTAGAAACCCAAACCTTCGGAACTCTAGGCCATCAATTTGGAAATGGTATAACTCGGTTCGAATTCGACAATATGTCAAGAACATTATGTCAAGACCAAAAGGTTTCAGATCCATGCCATGGCCACAAATGTCCAAATGGTCAGACGTGTCAGTTGGGAGTGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>488 156 140 103 79 24 10</canonical_bands>
                <polymorphic_bands>644 140 103 79 24 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTTTTAGGAAACTTCAAGAATG</pcr_primer_p1>
		<pcr_primer_p2>GTCTTGACATAATGTTCTTGACATA</pcr_primer_p2>
		<pcr_amplicon_size>574</pcr_amplicon_size>
		<canonical_amplicon>AACTTTTAGGAAACTTCAAGAATGCATGCAACCCGGGCCCTGTCATAGTTTCTTTCAGAATCAATATTTTTAGATAATCTAAACTTGATATGATAAAACTTAATAAGTGCTACAAAATGATATTATTCGAAAAACTGTATCTAGTCTATGAACAAAGTTACAGAAGAAGCGGATTAAAAACAGGCAGAGCGCGGCCCAGCCCGGATTGGCTACTTTATGGCTTGTAACTTTGTTCATAGACAAGTTGAAATTTTTAAACACTATCATTTCGTAGTACTCGTCAAGTTCTATTATAGCTAGTTTGGTTGGCCCAAAACATTAATTCTAAAATAAACTACGGCAGAGCCTGCAAAGGCGCACCAAATTTTAGATTTTCTAGGCTACCAACTAATTGAGCGAAATCAGAACGTTTCGAAACAAGTTTCAGGATTCGTATAGCTTCACGTTAGCTAACTTACATCCCCTTTAAGTTGGTCGCCTAGAAACCCAAACCTTCGGAACTCTAGGCCATCAATTTGGAAATGGTATAACTCGGTTCGAATTCGACAATATGTCAAGAACATTATGTCAAGAC</canonical_amplicon>
		<polymorphic_amplicon>AACTTTTAGGAAACTTCAAGAATGCATGCAACCCGGGCCCTGTCATAGTTTCTTTCAGAATCAATATTTTTAGATAATCTAAACTTGATATGATAAAACTTAATAAGTGCTACAAAATGATATTATTCGAAAAACTGTATCTRGTCTATGAACAAAGTTACAGAAGAAGCGGATTAAAAACAGGCAGAGCGCGGCCCAGCCCGGATTGGCTACTTTATGGCTTGTAACTTTGTTCATAGACAAGTTGAAATTTTTAAACACTATCATTTCGTAGTACTCGTCAAGTTCTATTATAGCTAGTTTGGTTGGCCCAAAACATTAATTCTAAAATAAACTACGGCAGAGCCTGCAAAGGCGCACCAAATTTTAGATTTTCTAGGCTACCAACTAATTGAGCGAAATCAGAACGTTTCGAAACAAGTTTCAGGATTCGTATAGCTTCACGTTAGCTAACTTACATCCCCTTTAAGTTGGTCGCCTAGAAACCCAAACCTTCGGAACTCTAGGCCATCAATTTGGAAATGGTATAACTCGGTTCGAATTCGACAATATGTCAAGAACATTATGTCAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33788</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>424828</contig_pos>
        <strand>+</strand>
        <context>GAAGAAGCGG[A/G]TTAAAAACAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATTCGAAAAACTGTATCTAGTCTATGAACAAAGTTACAGAAGAAGCGG</left_flank>
        <right_flank>TTAAAAACAGGCAGAGCGCGGCCCAGCCCGGATTGGCTACTTTATGGCTT</right_flank>
        <qual_score>149</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCCAAAAGGTGGAGGATTGTGGTTTCTGGGAACAAAAAAAAATAACAAAAAACATTTCAGAGAAGCGAAATCCATGCGAAGATTTGAGATGTGGTCCAGGCGAGGATTGTGTGGTGAACCAGATAAATGGGATTCTTCTCGCTCAATGCATCTGCCCGACTCAATGTCCAAATTATGGTGATTCGGTGGAATCTTCACCTGTCTGCTCGTCGCATGGTGTCGATTACCAATCTTCGTGTCATTTGAGACACCACGCTTGTGAATCAAAGACAAACATCACAGTCAAGTTTTATGGCAGATGTGGTGAGTCGGTGAACGTCGATGAAACTTTTAGGAAACTTCAAGAATGCATGCAACCCGGGCCCTGTCATAGTTTCTTTCAGAATCAATATTTTTAGATAATCTAAACTTGATATGATAAAACTTAATAAGTGCTACAAAATGATATTATTCGAAAAACTGTATCTAGTCTATGAACAAAGTTACAGAAGAAGCGGATTAAAAACAGGCAGAGCGCGGCCCAGCCCGGATTGGCTACTTTATGGCTTGTAACTTTGTTCATAGACAAGTTGAAATTTTTAAACACTATCATTTCGTAGTACTCGTCAAGTTCTATTATAGCTAGTTTGGTTGGCCCAAAACATTAATTCTAAAATAAACTACGGCAGAGCCTGCAAAGGCGCACCAAATTTTAGATTTTCTAGGCTACCAACTAATTGAGCGAAATCAGAACGTTTCGAAACAAGTTTCAGGATTCGTATAGCTTCACGTTAGCTAACTTACATCCCCTTTAAGTTGGTCGCCTAGAAACCCAAACCTTCGGAACTCTAGGCCATCAATTTGGAAATGGTATAACTCGGTTCGAATTCGACAATATGTCAAGAACATTATGTCAAGACCAAAAGGTTTCAGATCCATGCCATGGCCACAAATGTCCAAATGGTCAGACGTGTCAGTTGGGAGTGGATAGAAGACCAGAATGTAGATGTAGCGAGCAA</canonical>
            <polymorphic>TATCCAAAAGGTGGAGGATTGTGGTTTCTGGGAACAAAAAAAAATAACAAAAAACATTTCAGAGAAGCGAAATCCATGCGAAGATTTGAGATGTGGTCCAGGCGAGGATTGTGTGGTGAACCAGATAAATGGGATTCTTCTCGCTCAATGCATCTGCCCGACTCAATGTCCAAATTATGGTGATTCGGTGGAATCTTCACCTGTCTGCTCGTCGCATGGTGTCGATTACCAATCTTCGTGTCATTTGAGACACCACGCTTGTGAATCAAAGACAAACATCACAGTCAAGTTTTATGGCAGATGTGGTGAGTCGGTGAACGTCGATGAAACTTTTAGGAAACTTCAAGAATGCATGCAACCCGGGCCCTGTCATAGTTTCTTTCAGAATCAATATTTTTAGATAATCTAAACTTGATATGATAAAACTTAATAAGTGCTACAAAATGATATTATTCGAAAAACTGTATCTAGTCTATGAACAAAGTTACAGAAGAAGCGGRTTAAAAACAGGCAGAGCGCGGCCCAGCCCGGATTGGCTACTTTATGGCTTGTAACTTTGTTCATAGACAAGTTGAAATTTTTAAACACTATCATTTCGTAGTACTCGTCAAGTTCTATTATAGCTAGTTTGGTTGGCCCAAAACATTAATTCTAAAATAAACTACGGCAGAGCCTGCAAAGGCGCACCAAATTTTAGATTTTCTAGGCTACCAACTAATTGAGCGAAATCAGAACGTTTCGAAACAAGTTTCAGGATTCGTATAGCTTCACGTTAGCTAACTTACATCCCCTTTAAGTTGGTCGCCTAGAAACCCAAACCTTCGGAACTCTAGGCCATCAATTTGGAAATGGTATAACTCGGTTCGAATTCGACAATATGTCAAGAACATTATGTCAAGACCAAAAGGTTTCAGATCCATGCCATGGCCACAAATGTCCAAATGGTCAGACGTGTCAGTTGGGAGTGGATAGAAGACCAGAATGTAGATGTAGCGAGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTTTTAGGAAACTTCAAGAATG</pcr_primer_p1>
		<pcr_primer_p2>GTCTTGACATAATGTTCTTGACATA</pcr_primer_p2>
		<pcr_amplicon_size>574</pcr_amplicon_size>
		<canonical_amplicon>AACTTTTAGGAAACTTCAAGAATGCATGCAACCCGGGCCCTGTCATAGTTTCTTTCAGAATCAATATTTTTAGATAATCTAAACTTGATATGATAAAACTTAATAAGTGCTACAAAATGATATTATTCGAAAAACTGTATCTAGTCTATGAACAAAGTTACAGAAGAAGCGGATTAAAAACAGGCAGAGCGCGGCCCAGCCCGGATTGGCTACTTTATGGCTTGTAACTTTGTTCATAGACAAGTTGAAATTTTTAAACACTATCATTTCGTAGTACTCGTCAAGTTCTATTATAGCTAGTTTGGTTGGCCCAAAACATTAATTCTAAAATAAACTACGGCAGAGCCTGCAAAGGCGCACCAAATTTTAGATTTTCTAGGCTACCAACTAATTGAGCGAAATCAGAACGTTTCGAAACAAGTTTCAGGATTCGTATAGCTTCACGTTAGCTAACTTACATCCCCTTTAAGTTGGTCGCCTAGAAACCCAAACCTTCGGAACTCTAGGCCATCAATTTGGAAATGGTATAACTCGGTTCGAATTCGACAATATGTCAAGAACATTATGTCAAGAC</canonical_amplicon>
		<polymorphic_amplicon>AACTTTTAGGAAACTTCAAGAATGCATGCAACCCGGGCCCTGTCATAGTTTCTTTCAGAATCAATATTTTTAGATAATCTAAACTTGATATGATAAAACTTAATAAGTGCTACAAAATGATATTATTCGAAAAACTGTATCTAGTCTATGAACAAAGTTACAGAAGAAGCGGRTTAAAAACAGGCAGAGCGCGGCCCAGCCCGGATTGGCTACTTTATGGCTTGTAACTTTGTTCATAGACAAGTTGAAATTTTTAAACACTATCATTTCGTAGTACTCGTCAAGTTCTATTATAGCTAGTTTGGTTGGCCCAAAACATTAATTCTAAAATAAACTACGGCAGAGCCTGCAAAGGCGCACCAAATTTTAGATTTTCTAGGCTACCAACTAATTGAGCGAAATCAGAACGTTTCGAAACAAGTTTCAGGATTCGTATAGCTTCACGTTAGCTAACTTACATCCCCTTTAAGTTGGTCGCCTAGAAACCCAAACCTTCGGAACTCTAGGCCATCAATTTGGAAATGGTATAACTCGGTTCGAATTCGACAATATGTCAAGAACATTATGTCAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33789</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>425063</contig_pos>
        <strand></strand>
        <context>gaaatcagaa[C/G]gtttcgaaac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CACCAAATTTTAGATTTTCTAGGCTACCAACTAATTGAGCGAAATCAGAA</left_flank>
        <right_flank>GTTTCGAAACAAGTTTCAGGATTCGTATAGCTTCACGTTAGCTAACTTAC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGTGTCATTTGAGACACCACGCTTGTGAATCAAAGACAAACATCACAGTCAAGTTTTATGGCAGATGTGGTGAGTCGGTGAACGTCGATGAAACTTTTAGGAAACTTCAAGAATGCATGCAACCCGGGCCCTGTCATAGTTTCTTTCAGAATCAATATTTTTAGATAATCTAAACTTGATATGATAAAACTTAATAAGTGCTACAAAATGATATTATTCGAAAAACTGTATCTAGTCTATGAACAAAGTTACAGAAGAAGCGGATTAAAAACAGGCAGAGCGCGGCCCAGCCCGGATTGGCTACTTTATGGCTTGTAACTTTGTTCATAGACAAGTTGAAATTTTTAAACACTATCATTTCGTAGTACTCGTCAAGTTCTATTATAGCTAGTTTGGTTGGCCCAAAACATTAATTCTAAAATAAACTACGGCAGAGCCTGCAAAGGCGCACCAAATTTTAGATTTTCTAGGCTACCAACTAATTGAGCGAAATCAGAACGTTTCGAAACAAGTTTCAGGATTCGTATAGCTTCACGTTAGCTAACTTACATCCCCTTTAAGTTGGTCGCCTAGAAACCCAAACCTTCGGAACTCTAGGCCATCAATTTGGAAATGGTATAACTCGGTTCGAATTCGACAATATGTCAAGAACATTATGTCAAGACCAAAAGGTTTCAGATCCATGCCATGGCCACAAATGTCCAAATGGTCAGACGTGTCAGTTGGGAGTGGATAGAAGACCAGAATGTAGATGTAGCGAGCAATGCTCGATGAATAGTGCGCATGTCTGTGGAACTGATGGAAAAACGTAGGTGAAAATGTACAGAATTACCCGGACTAAAAATGAAACGCCAAGGAGCGCGCGTATTTTAAAGGCGCATATCTCAACAGCTTAAAATGATAGGCTTATTTTACTAACTAACAAAATGCGTGCAATTTTAAGTTCTATATTTTTGTAGTTCACTCCATTTTCATAACTACTGTAGTTTTTGAGATAAA</canonical>
            <polymorphic>TCGTGTCATTTGAGACACCACGCTTGTGAATCAAAGACAAACATCACAGTCAAGTTTTATGGCAGATGTGGTGAGTCGGTGAACGTCGATGAAACTTTTAGGAAACTTCAAGAATGCATGCAACCCGGGCCCTGTCATAGTTTCTTTCAGAATCAATATTTTTAGATAATCTAAACTTGATATGATAAAACTTAATAAGTGCTACAAAATGATATTATTCGAAAAACTGTATCTAGTCTATGAACAAAGTTACAGAAGAAGCGGATTAAAAACAGGCAGAGCGCGGCCCAGCCCGGATTGGCTACTTTATGGCTTGTAACTTTGTTCATAGACAAGTTGAAATTTTTAAACACTATCATTTCGTAGTACTCGTCAAGTTCTATTATAGCTAGTTTGGTTGGCCCAAAACATTAATTCTAAAATAAACTACGGCAGAGCCTGCAAAGGCGCACCAAATTTTAGATTTTCTAGGCTACCAACTAATTGAGCGAAATCAGAASGTTTCGAAACAAGTTTCAGGATTCGTATAGCTTCACGTTAGCTAACTTACATCCCCTTTAAGTTGGTCGCCTAGAAACCCAAACCTTCGGAACTCTAGGCCATCAATTTGGAAATGGTATAACTCGGTTCGAATTCGACAATATGTCAAGAACATTATGTCAAGACCAAAAGGTTTCAGATCCATGCCATGGCCACAAATGTCCAAATGGTCAGACGTGTCAGTTGGGAGTGGATAGAAGACCAGAATGTAGATGTAGCGAGCAATGCTCGATGAATAGTGCGCATGTCTGTGGAACTGATGGAAAAACGTAGGTGAAAATGTACAGAATTACCCGGACTAAAAATGAAACGCCAAGGAGCGCGCGTATTTTAAAGGCGCATATCTCAACAGCTTAAAATGATAGGCTTATTTTACTAACTAACAAAATGCGTGCAATTTTAAGTTCTATATTTTTGTAGTTCACTCCATTTTCATAACTACTGTAGTTTTTGAGATAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>416 192 180 93 83 36</canonical_bands>
                <polymorphic_bands>452 192 180 93 83</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTTTTAGGAAACTTCAAGAATG</pcr_primer_p1>
		<pcr_primer_p2>GTCTTGACATAATGTTCTTGACATA</pcr_primer_p2>
		<pcr_amplicon_size>574</pcr_amplicon_size>
		<canonical_amplicon>AACTTTTAGGAAACTTCAAGAATGCATGCAACCCGGGCCCTGTCATAGTTTCTTTCAGAATCAATATTTTTAGATAATCTAAACTTGATATGATAAAACTTAATAAGTGCTACAAAATGATATTATTCGAAAAACTGTATCTAGTCTATGAACAAAGTTACAGAAGAAGCGGATTAAAAACAGGCAGAGCGCGGCCCAGCCCGGATTGGCTACTTTATGGCTTGTAACTTTGTTCATAGACAAGTTGAAATTTTTAAACACTATCATTTCGTAGTACTCGTCAAGTTCTATTATAGCTAGTTTGGTTGGCCCAAAACATTAATTCTAAAATAAACTACGGCAGAGCCTGCAAAGGCGCACCAAATTTTAGATTTTCTAGGCTACCAACTAATTGAGCGAAATCAGAACGTTTCGAAACAAGTTTCAGGATTCGTATAGCTTCACGTTAGCTAACTTACATCCCCTTTAAGTTGGTCGCCTAGAAACCCAAACCTTCGGAACTCTAGGCCATCAATTTGGAAATGGTATAACTCGGTTCGAATTCGACAATATGTCAAGAACATTATGTCAAGAC</canonical_amplicon>
		<polymorphic_amplicon>AACTTTTAGGAAACTTCAAGAATGCATGCAACCCGGGCCCTGTCATAGTTTCTTTCAGAATCAATATTTTTAGATAATCTAAACTTGATATGATAAAACTTAATAAGTGCTACAAAATGATATTATTCGAAAAACTGTATCTAGTCTATGAACAAAGTTACAGAAGAAGCGGATTAAAAACAGGCAGAGCGCGGCCCAGCCCGGATTGGCTACTTTATGGCTTGTAACTTTGTTCATAGACAAGTTGAAATTTTTAAACACTATCATTTCGTAGTACTCGTCAAGTTCTATTATAGCTAGTTTGGTTGGCCCAAAACATTAATTCTAAAATAAACTACGGCAGAGCCTGCAAAGGCGCACCAAATTTTAGATTTTCTAGGCTACCAACTAATTGAGCGAAATCAGAASGTTTCGAAACAAGTTTCAGGATTCGTATAGCTTCACGTTAGCTAACTTACATCCCCTTTAAGTTGGTCGCCTAGAAACCCAAACCTTCGGAACTCTAGGCCATCAATTTGGAAATGGTATAACTCGGTTCGAATTCGACAATATGTCAAGAACATTATGTCAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33790</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>426367</contig_pos>
        <strand></strand>
        <context>cctatcaaag[G/A]tatgaaaaag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AACTTGTGGTAAGTTGAAGGGCTCCTAACTTATCTCGTTTCCTATCAAAG</left_flank>
        <right_flank>TATGAAAAAGTTGTCAACTAATAACTTATTTATCATAATGTCACAAACAT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAATTTTTGTAATCTCAAGACGGATATATCTAAAGATATACCCATTTTTATCAGTCCGGGTAGTTGTGCATCAACTCATTGAATCATAATTCATAAATGTTTCCAGATATATGAATGAATGCTTCCTCAAACTTGCCGCATGCAAAGAGCAAAAGGATATTATCATCTGGAAAAGAGGAAACTGTAACGAAGTGGGAAGTCCATGTGAGAAAATGGAATGTGGATTCTGGGGAAGTTGTGTTGTCAAACCGGATCGAACGGCGGAGTGTGAATGTCCATCGAAGTGTGAAGATGTAATGAGACCAGTTTGTGCAACGGTAAGATTACAGAAACGGGCAAAATTAGGAAAAATAAGTCATTTTGAGAATGGCGAAACTTTTGATAACGAGTGCGAGATGAAGAAGAAAAGTTGTGAGACAAAATCGATGATCAAAGTGAAATACCAGGGAACTTGTGGTAAGTTGAAGGGCTCCTAACTTATCTCGTTTCCTATCAAAGGTATGAAAAAGTTGTCAACTAATAACTTATTTATCATAATGTCACAAACATTTTACCAGTTTACACAATTTTGATATCTTAGATAGGAGCCGAGATGATTGAGCTCAAACTTGATTAAAGGTTTTACGGTAACAACTTTTAGGAATCGGAGTTTGCGCAACATTCAATTCTTGCAAGAAACCTCAAGTATGTGTAGCCGTGGATGGCAAACCAAAATGTGTTTGTCCCTCATGTAGTGATGAACTTAAAGAAGTTTGTGGAAGCGATGGAATCACATATGCAAACGAATGTAAACTCCGTAACACTGCTTGTATGACACAGAAAGACATATTTGTGAAGTACAACTCTGTTTGTGGTAATTTCTACCTTAACAAAATAACAACGGAAAATTGAGTTTCAGAAGGATGTAAAGACAAGAAATGCGACTTCTACTCAACATGTGTAGTCGGCGATAATCACAAACCAGAATGCAAATGTCCGGATGACTGTCCACTTTACGAA</canonical>
            <polymorphic>CTAATTTTTGTAATCTCAAGACGGATATATCTAAAGATATACCCATTTTTATCAGTCCGGGTAGTTGTGCATCAACTCATTGAATCATAATTCATAAATGTTTCCAGATATATGAATGAATGCTTCCTCAAACTTGCCGCATGCAAAGAGCAAAAGGATATTATCATCTGGAAAAGAGGAAACTGTAACGAAGTGGGAAGTCCATGTGAGAAAATGGAATGTGGATTCTGGGGAAGTTGTGTTGTCAAACCGGATCGAACGGCGGAGTGTGAATGTCCATCGAAGTGTGAAGATGTAATGAGACCAGTTTGTGCAACGGTAAGATTACAGAAACGGGCAAAATTAGGAAAAATAAGTCATTTTGAGAATGGCGAAACTTTTGATAACGAGTGCGAGATGAAGAAGAAAAGTTGTGAGACAAAATCGATGATCAAAGTGAAATACCAGGGAACTTGTGGTAAGTTGAAGGGCTCCTAACTTATCTCGTTTCCTATCAAAGRTATGAAAAAGTTGTCAACTAATAACTTATTTATCATAATGTCACAAACATTTTACCAGTTTACACAATTTTGATATCTTAGATAGGAGCCGAGATGATTGAGCTCAAACTTGATTAAAGGTTTTACGGTAACAACTTTTAGGAATCGGAGTTTGCGCAACATTCAATTCTTGCAAGAAACCTCAAGTATGTGTAGCCGTGGATGGCAAACCAAAATGTGTTTGTCCCTCATGTAGTGATGAACTTAAAGAAGTTTGTGGAAGCGATGGAATCACATATGCAAACGAATGTAAACTCCGTAACACTGCTTGTATGACACAGAAAGACATATTTGTGAAGTACAACTCTGTTTGTGGTAATTTCTACCTTAACAAAATAACAACGGAAAATTGAGTTTCAGAAGGATGTAAAGACAAGAAATGCGACTTCTACTCAACATGTGTAGTCGGCGATAATCACAAACCAGAATGCAAATGTCCGGATGACTGTCCACTTTACGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCTNNNNNAGG</site>
                <isoschizomers>
                    <enzyme>BstENI</enzyme>
                    <enzyme>EcoNI</enzyme>
                    <enzyme>XagI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAGAAAAGTTGTGAGACAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTCCGATTCCTAAAAGTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAGAAAAGTTGTGAGACAAAATCGATGATCAAAGTGAAATACCAGGGAACTTGTGGTAAGTTGAAGGGCTCCTAACTTATCTCGTTTCCTATCAAAGGTATGAAAAAGTTGTCAACTAATAACTTATTTATCATAATGTCACAAACATTTTACCAGTTTACACAATTTTGATATCTTAGATAGGAGCCGAGATGATTGAGCTCAAACTTGATTAAAGGTTTTACGGTAACAACTTTTAGGAATCGGAG</canonical_amplicon>
		<polymorphic_amplicon>AGAAGAAAAGTTGTGAGACAAAATCGATGATCAAAGTGAAATACCAGGGAACTTGTGGTAAGTTGAAGGGCTCCTAACTTATCTCGTTTCCTATCAAAGRTATGAAAAAGTTGTCAACTAATAACTTATTTATCATAATGTCACAAACATTTTACCAGTTTACACAATTTTGATATCTTAGATAGGAGCCGAGATGATTGAGCTCAAACTTGATTAAAGGTTTTACGGTAACAACTTTTAGGAATCGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33791</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>426395</contig_pos>
        <strand></strand>
        <context>ctaataactt[A/G]tttatcataa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTATCTCGTTTCCTATCAAAGGTATGAAAAAGTTGTCAACTAATAACTT</left_flank>
        <right_flank>TTTATCATAATGTCACAAACATTTTACCAGTTTACACAATTTTGATATCT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTAAAGATATACCCATTTTTATCAGTCCGGGTAGTTGTGCATCAACTCATTGAATCATAATTCATAAATGTTTCCAGATATATGAATGAATGCTTCCTCAAACTTGCCGCATGCAAAGAGCAAAAGGATATTATCATCTGGAAAAGAGGAAACTGTAACGAAGTGGGAAGTCCATGTGAGAAAATGGAATGTGGATTCTGGGGAAGTTGTGTTGTCAAACCGGATCGAACGGCGGAGTGTGAATGTCCATCGAAGTGTGAAGATGTAATGAGACCAGTTTGTGCAACGGTAAGATTACAGAAACGGGCAAAATTAGGAAAAATAAGTCATTTTGAGAATGGCGAAACTTTTGATAACGAGTGCGAGATGAAGAAGAAAAGTTGTGAGACAAAATCGATGATCAAAGTGAAATACCAGGGAACTTGTGGTAAGTTGAAGGGCTCCTAACTTATCTCGTTTCCTATCAAAGGTATGAAAAAGTTGTCAACTAATAACTTATTTATCATAATGTCACAAACATTTTACCAGTTTACACAATTTTGATATCTTAGATAGGAGCCGAGATGATTGAGCTCAAACTTGATTAAAGGTTTTACGGTAACAACTTTTAGGAATCGGAGTTTGCGCAACATTCAATTCTTGCAAGAAACCTCAAGTATGTGTAGCCGTGGATGGCAAACCAAAATGTGTTTGTCCCTCATGTAGTGATGAACTTAAAGAAGTTTGTGGAAGCGATGGAATCACATATGCAAACGAATGTAAACTCCGTAACACTGCTTGTATGACACAGAAAGACATATTTGTGAAGTACAACTCTGTTTGTGGTAATTTCTACCTTAACAAAATAACAACGGAAAATTGAGTTTCAGAAGGATGTAAAGACAAGAAATGCGACTTCTACTCAACATGTGTAGTCGGCGATAATCACAAACCAGAATGCAAATGTCCGGATGACTGTCCACTTTACGAAATGAGTCAAGGCAAAGAAGTTTGTGGAA</canonical>
            <polymorphic>ATCTAAAGATATACCCATTTTTATCAGTCCGGGTAGTTGTGCATCAACTCATTGAATCATAATTCATAAATGTTTCCAGATATATGAATGAATGCTTCCTCAAACTTGCCGCATGCAAAGAGCAAAAGGATATTATCATCTGGAAAAGAGGAAACTGTAACGAAGTGGGAAGTCCATGTGAGAAAATGGAATGTGGATTCTGGGGAAGTTGTGTTGTCAAACCGGATCGAACGGCGGAGTGTGAATGTCCATCGAAGTGTGAAGATGTAATGAGACCAGTTTGTGCAACGGTAAGATTACAGAAACGGGCAAAATTAGGAAAAATAAGTCATTTTGAGAATGGCGAAACTTTTGATAACGAGTGCGAGATGAAGAAGAAAAGTTGTGAGACAAAATCGATGATCAAAGTGAAATACCAGGGAACTTGTGGTAAGTTGAAGGGCTCCTAACTTATCTCGTTTCCTATCAAAGGTATGAAAAAGTTGTCAACTAATAACTTRTTTATCATAATGTCACAAACATTTTACCAGTTTACACAATTTTGATATCTTAGATAGGAGCCGAGATGATTGAGCTCAAACTTGATTAAAGGTTTTACGGTAACAACTTTTAGGAATCGGAGTTTGCGCAACATTCAATTCTTGCAAGAAACCTCAAGTATGTGTAGCCGTGGATGGCAAACCAAAATGTGTTTGTCCCTCATGTAGTGATGAACTTAAAGAAGTTTGTGGAAGCGATGGAATCACATATGCAAACGAATGTAAACTCCGTAACACTGCTTGTATGACACAGAAAGACATATTTGTGAAGTACAACTCTGTTTGTGGTAATTTCTACCTTAACAAAATAACAACGGAAAATTGAGTTTCAGAAGGATGTAAAGACAAGAAATGCGACTTCTACTCAACATGTGTAGTCGGCGATAATCACAAACCAGAATGCAAATGTCCGGATGACTGTCCACTTTACGAAATGAGTCAAGGCAAAGAAGTTTGTGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGAAAAGTTGTGAGACAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTCCGATTCCTAAAAGTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAGAAAAGTTGTGAGACAAAATCGATGATCAAAGTGAAATACCAGGGAACTTGTGGTAAGTTGAAGGGCTCCTAACTTATCTCGTTTCCTATCAAAGGTATGAAAAAGTTGTCAACTAATAACTTATTTATCATAATGTCACAAACATTTTACCAGTTTACACAATTTTGATATCTTAGATAGGAGCCGAGATGATTGAGCTCAAACTTGATTAAAGGTTTTACGGTAACAACTTTTAGGAATCGGAG</canonical_amplicon>
		<polymorphic_amplicon>AGAAGAAAAGTTGTGAGACAAAATCGATGATCAAAGTGAAATACCAGGGAACTTGTGGTAAGTTGAAGGGCTCCTAACTTATCTCGTTTCCTATCAAAGGTATGAAAAAGTTGTCAACTAATAACTTRTTTATCATAATGTCACAAACATTTTACCAGTTTACACAATTTTGATATCTTAGATAGGAGCCGAGATGATTGAGCTCAAACTTGATTAAAGGTTTTACGGTAACAACTTTTAGGAATCGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33792</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>429486</contig_pos>
        <strand>+</strand>
        <context>TAAAACCTGT[G/T]TTAGGTCCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTAGACATGAAGATTGTGAAAAAGTTAGTTTGAACTACCGTAAAACCTGT</left_flank>
        <right_flank>TTAGGTCCCTGTAATAAAAGAGCCCCTTAAATTGACAAAATAAAATTCAG</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGATCCCAGTTTAGTGTTCGGACCGTTCGAACGGACTTAAACAATTGAATTCAGCAATTTTCGAAAATTATCTTTCGGAAAACACCTGTTTTTTCTCAGAGATTGTCACTCCCTCCGCTGCTTCCATGGAGCCAAATGTGTCCCCTCGCCAGCCAGTTTCCCGGATTGTGTCTGCCCTCAAACTTGCAATATGGATCGCCTAGGAGTGGTGGCAAACATGACAGTTTGTGGCTCTGATGGAACTACGTATTCAAATCTTTGTGAACTTAAAATGTTCGCCTGTAAGCATCAGATGGATGTGGTACCAGTTTCCATGGGAATCTGTGATGATGGTAAGGATTTTGAATGAGAGGGATTTAATCAATTAATATACAGAAAGTTTCGAAGTTTTGGATCGTCTCCAGAGAGAGCAAAACACTAAGGAGAAGAGATTAGGGTCTCCATGTTCTAGACATGAAGATTGTGAAAAAGTTAGTTTGAACTACCGTAAAACCTGTTTTAGGTCCCTGTAATAAAAGAGCCCCTTAAATTGACAAAATAAAATTCAGCTATCCGCACAATGCATAACTCGCCCAGGAAGGAAATCTGTTTGTGACTGTGGAGAAGGATGGAGAAGTCATCAAGGCATTTGTGTAGAAATTTTCAAAAAGAGAAGTTGGATTTAGGAAAAATTCTATTTAAAAACATATATAATTTTAGAATATGATCAACTAGAACTAGCCACTGATCTGAAATCTGATTGGTTTGTTTCGAGAAAAGATGTGACCAGATTCTCAAAACTCTCTTTGCATGTAAGAATTCAAATTTAGATTCCTCCCAAATTCCCCAATTTTTTAAAGATTCACCTCAAAGAGAAACGAGAAGGGACACTATTGAGAATGGTGACAGAAGACAAAAAGGACTTGGAAATCGTTCATGAAAATCGACGGATCGTTATCATGTATGTACATTTTTAAAAACAAAGTTTTAACCCAAAATAAAAACAAGAACTAGAATGA</canonical>
            <polymorphic>ACTGATCCCAGTTTAGTGTTCGGACCGTTCGAACGGACTTAAACAATTGAATTCAGCAATTTTCGAAAATTATCTTTCGGAAAACACCTGTTTTTTCTCAGAGATTGTCACTCCCTCCGCTGCTTCCATGGAGCCAAATGTGTCCCCTCGCCAGCCAGTTTCCCGGATTGTGTCTGCCCTCAAACTTGCAATATGGATCGCCTAGGAGTGGTGGCAAACATGACAGTTTGTGGCTCTGATGGAACTACGTATTCAAATCTTTGTGAACTTAAAATGTTCGCCTGTAAGCATCAGATGGATGTGGTACCAGTTTCCATGGGAATCTGTGATGATGGTAAGGATTTTGAATGAGAGGGATTTAATCAATTAATATACAGAAAGTTTCGAAGTTTTGGATCGTCTCCAGAGAGAGCAAAACACTAAGGAGAAGAGATTAGGGTCTCCATGTTCTAGACATGAAGATTGTGAAAAAGTTAGTTTGAACTACCGTAAAACCTGTKTTAGGTCCCTGTAATAAAAGAGCCCCTTAAATTGACAAAATAAAATTCAGCTATCCGCACAATGCATAACTCGCCCAGGAAGGAAATCTGTTTGTGACTGTGGAGAAGGATGGAGAAGTCATCAAGGCATTTGTGTAGAAATTTTCAAAAAGAGAAGTTGGATTTAGGAAAAATTCTATTTAAAAACATATATAATTTTAGAATATGATCAACTAGAACTAGCCACTGATCTGAAATCTGATTGGTTTGTTTCGAGAAAAGATGTGACCAGATTCTCAAAACTCTCTTTGCATGTAAGAATTCAAATTTAGATTCCTCCCAAATTCCCCAATTTTTTAAAGATTCACCTCAAAGAGAAACGAGAAGGGACACTATTGAGAATGGTGACAGAAGACAAAAAGGACTTGGAAATCGTTCATGAAAATCGACGGATCGTTATCATGTATGTACATTTTTAAAAACAAAGTTTTAACCCAAAATAAAAACAAGAACTAGAATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAAAACACTAAGGAGAAGAGA</pcr_primer_p1>
		<pcr_primer_p2>TAAATCCAACTTCTCTTTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>GCAAAACACTAAGGAGAAGAGATTAGGGTCTCCATGTTCTAGACATGAAGATTGTGAAAAAGTTAGTTTGAACTACCGTAAAACCTGTTTTAGGTCCCTGTAATAAAAGAGCCCCTTAAATTGACAAAATAAAATTCAGCTATCCGCACAATGCATAACTCGCCCAGGAAGGAAATCTGTTTGTGACTGTGGAGAAGGATGGAGAAGTCATCAAGGCATTTGTGTAGAAATTTTCAAAAAGAGAAGTTGGATTTA</canonical_amplicon>
		<polymorphic_amplicon>GCAAAACACTAAGGAGAAGAGATTAGGGTCTCCATGTTCTAGACATGAAGATTGTGAAAAAGTTAGTTTGAACTACCGTAAAACCTGTKTTAGGTCCCTGTAATAAAAGAGCCCCTTAAATTGACAAAATAAAATTCAGCTATCCGCACAATGCATAACTCGCCCAGGAAGGAAATCTGTTTGTGACTGTGGAGAAGGATGGAGAAGTCATCAAGGCATTTGTGTAGAAATTTTCAAAAAGAGAAGTTGGATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33793</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>430860</contig_pos>
        <strand></strand>
        <context>atagaagagc[C/T]tcgcattgtc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGTTAGCTTGGAGGTGAGGAATTGATGGAAAACCCTGTAATAGAAGAGC</left_flank>
        <right_flank>TCGCATTGTCAACTTTGAGCTTAACTATCTCGGTTTCTATGAAAGATATC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAATTCGATTTTCGAGAGGGCTAAAATTCCATAAAATTCAATTAAACCCCAATTTTTTCTATTCAATGTCTAGTTTAGCATCCTGATGACATTTTTGGAATCAGGAAGAGTTTTCGGGCAACATTCTTGCAGAAAAATGTTTTAATTAATTTTCGCCCTCTTCGAATCTTTTTGCAAATGTCTAATGAGATTTGTCATCTGATTTTGAAAATTACATTTGAGAAAAAGACACCTACCACACTGTCATCAGAATCATGCCGAACGCGACTGAATTCAATATTAGATCCAGGTTTTCTGGAAAAATCAATAACGATGGAATGTCTTCCACTCATCTTTTAGAAGTTTAATGATAAGAGACAGACACAATCGCAAAAATTTCTTCTTATCAGTTAAAATGGTTTCAGAGTTAGCAAAGCACGAGTCGAATCATTACAAACGATTGCGTATAATGTTAGCTTGGAGGTGAGGAATTGATGGAAAACCCTGTAATAGAAGAGCCTCGCATTGTCAACTTTGAGCTTAACTATCTCGGTTTCTATGAAAGATATCCAAAAATTGACAACGGATAAAATATTGGTGATATTATGATCAACAATTTATCAGTTTAACCTTTTTGATATCTCCCACAAACACCTGGATAAATTGGCCCAAAGTTAAAAGCCAGAGAGCCCTTTTATTACAGGTTTCAGGCTAATCGAAAAATACTCTAGATAAGTGGTTTCAGTTGAAATGGAGAAGAAACGAATTGCATTTCAAACTAAACGGAGAGATTCAAAAACACACTTTCGACGGTGTTCTGGATTCGTCTGCTAAGAAAATCTTCTTGGGTTCGGATGGAAAATGGCCGAAAAGTCGATTGTATGCAATTATTGGATTCCTAGAGATTGATGATGTTCCTGTTCGAATAGCTGATGTCAAACCATTCTGTATGATAACTTCTGAACTTGACAATTAATTCGGAGGGTGCAAAGAGTTAAGGGTCATTAGGGTACAAGACAT</canonical>
            <polymorphic>GAAATTCGATTTTCGAGAGGGCTAAAATTCCATAAAATTCAATTAAACCCCAATTTTTTCTATTCAATGTCTAGTTTAGCATCCTGATGACATTTTTGGAATCAGGAAGAGTTTTCGGGCAACATTCTTGCAGAAAAATGTTTTAATTAATTTTCGCCCTCTTCGAATCTTTTTGCAAATGTCTAATGAGATTTGTCATCTGATTTTGAAAATTACATTTGAGAAAAAGACACCTACCACACTGTCATCAGAATCATGCCGAACGCGACTGAATTCAATATTAGATCCAGGTTTTCTGGAAAAATCAATAACGATGGAATGTCTTCCACTCATCTTTTAGAAGTTTAATGATAAGAGACAGACACAATCGCAAAAATTTCTTCTTATCAGTTAAAATGGTTTCAGAGTTAGCAAAGCACGAGTCGAATCATTACAAACGATTGCGTATAATGTTAGCTTGGAGGTGAGGAATTGATGGAAAACCCTGTAATAGAAGAGCYTCGCATTGTCAACTTTGAGCTTAACTATCTCGGTTTCTATGAAAGATATCCAAAAATTGACAACGGATAAAATATTGGTGATATTATGATCAACAATTTATCAGTTTAACCTTTTTGATATCTCCCACAAACACCTGGATAAATTGGCCCAAAGTTAAAAGCCAGAGAGCCCTTTTATTACAGGTTTCAGGCTAATCGAAAAATACTCTAGATAAGTGGTTTCAGTTGAAATGGAGAAGAAACGAATTGCATTTCAAACTAAACGGAGAGATTCAAAAACACACTTTCGACGGTGTTCTGGATTCGTCTGCTAAGAAAATCTTCTTGGGTTCGGATGGAAAATGGCCGAAAAGTCGATTGTATGCAATTATTGGATTCCTAGAGATTGATGATGTTCCTGTTCGAATAGCTGATGTCAAACCATTCTGTATGATAACTTCTGAACTTGACAATTAATTCGGAGGGTGCAAAGAGTTAAGGGTCATTAGGGTACAAGACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>435 154 128 91 64 42 22 21 21 14 8</canonical_bands>
                <polymorphic_bands>435 154 128 91 64 63 22 21 14 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATAATGTTAGCTTGGAGGTGAG</pcr_primer_p1>
		<pcr_primer_p2>CATTTCAACTGAAACCACTTATC</pcr_primer_p2>
		<pcr_amplicon_size>288</pcr_amplicon_size>
		<canonical_amplicon>TATAATGTTAGCTTGGAGGTGAGGAATTGATGGAAAACCCTGTAATAGAAGAGCCTCGCATTGTCAACTTTGAGCTTAACTATCTCGGTTTCTATGAAAGATATCCAAAAATTGACAACGGATAAAATATTGGTGATATTATGATCAACAATTTATCAGTTTAACCTTTTTGATATCTCCCACAAACACCTGGATAAATTGGCCCAAAGTTAAAAGCCAGAGAGCCCTTTTATTACAGGTTTCAGGCTAATCGAAAAATACTCTAGATAAGTGGTTTCAGTTGAAATG</canonical_amplicon>
		<polymorphic_amplicon>TATAATGTTAGCTTGGAGGTGAGGAATTGATGGAAAACCCTGTAATAGAAGAGCYTCGCATTGTCAACTTTGAGCTTAACTATCTCGGTTTCTATGAAAGATATCCAAAAATTGACAACGGATAAAATATTGGTGATATTATGATCAACAATTTATCAGTTTAACCTTTTTGATATCTCCCACAAACACCTGGATAAATTGGCCCAAAGTTAAAAGCCAGAGAGCCCTTTTATTACAGGTTTCAGGCTAATCGAAAAATACTCTAGATAAGTGGTTTCAGTTGAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33794</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>431673</contig_pos>
        <strand>+</strand>
        <context>TTTCAGAGGM[A/C]TTTTTTATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGTGGAAATTGCATTCAACCGTACCGAACAAACGGTAATTTTTCAGAGGC</left_flank>
        <right_flank>TTTTTTATTTACAATACTGGTCAATCAGATTTTTGGCCATTTTGACCATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAAATCTTCTTGGGTTCGGATGGAAAATGGCCGAAAAGTCGATTGTATGCAATTATTGGATTCCTAGAGATTGATGATGTTCCTGTTCGAATAGCTGATGTCAAACCATTCTGTATGATAACTTCTGAACTTGACAATTAATTCGGAGGGTGCAAAGAGTTAAGGGTCATTAGGGTACAAGACATTTTAGGGTTACAAAATACCTGAAAAAATCCGACCTTTGTACCCCCGAATCGTGGATTTTGTATCCCTAAATCACGTTATACCCCTTTGTGCCCCCGAACTGCTGTACCCTTCGAATAATCTGCATATCTTCTGGACTTTGATTTTGAAAATATTTTGACAAATTTCAGACATGACTCCGGAAATCTCCCGAATCGTTAAATTCAAGGAGAATGGATATCTGAAATATGAAAATTTGAATATGGATGTGAGAGAGAAGACGTTTGTGGAAATTGCATTCAACCGTACCGAACAAACGGTAATTTTTCAGAGGCTTTTTTTATTTACAATACTGGTCAATCAGATTTTTGGCCATTTTGACCATTTACAGAAGTCTAGAGGTCTGCTGTCAAGTTTCCGATCACTTTGAAAGTTTTGGAGGGTGTAAAACAGACCTAGATTGAGCATTTGGCATTCACAGAACTTTTTGAAAACTCCTAGATTTTCAAACATTTGCCAATTTCTGAAAGGTACCCCTTTTTGACCTATTTTTGGGCTCCGCGGCACTTTGAAATTGTGACCCTTTAAAACTAGTCATTTCGAAACCAGTCTTTTCTAAACCGGTCATTTTGAAACCGTGGCAATACATGCGGATGCATAAATTTCAGACTACGAAAACAATTTTAGAGTTTTCAAATATGCTTTTCCATCATATTCTGAAATCCGAAAAAATCCAAAATGTAATTTTTTTCAAAAATATTTGTTTGGAATTTTTGTAGTTTTTAGGATGTGTTCCATCAGAAAAAAAGCATATTTGAAAAATCTAAAATTGTTTT</canonical>
            <polymorphic>AGAAAATCTTCTTGGGTTCGGATGGAAAATGGCCGAAAAGTCGATTGTATGCAATTATTGGATTCCTAGAGATTGATGATGTTCCTGTTCGAATAGCTGATGTCAAACCATTCTGTATGATAACTTCTGAACTTGACAATTAATTCGGAGGGTGCAAAGAGTTAAGGGTCATTAGGGTACAAGACATTTTAGGGTTACAAAATACCTGAAAAAATCCGACCTTTGTACCCCCGAATCGTGGATTTTGTATCCCTAAATCACGTTATACCCCTTTGTGCCCCCGAACTGCTGTACCCTTCGAATAATCTGCATATCTTCTGGACTTTGATTTTGAAAATATTTTGACAAATTTCAGACATGACTCCGGAAATCTCCCGAATCGTTAAATTCAAGGAGAATGGATATCTGAAATATGAAAATTTGAATATGGATGTGAGAGAGAAGACGTTTGTGGAAATTGCATTCAACCGTACCGAACAAACGGTAATTTTTCAGAGGCMTTTTTTATTTACAATACTGGTCAATCAGATTTTTGGCCATTTTGACCATTTACAGAAGTCTAGAGGTCTGCTGTCAAGTTTCCGATCACTTTGAAAGTTTTGGAGGGTGTAAAACAGACCTAGATTGAGCATTTGGCATTCACAGAACTTTTTGAAAACTCCTAGATTTTCAAACATTTGCCAATTTCTGAAAGGTACCCCTTTTTGACCTATTTTTGGGCTCCGCGGCACTTTGAAATTGTGACCCTTTAAAACTAGTCATTTCGAAACCAGTCTTTTCTAAACCGGTCATTTTGAAACCGTGGCAATACATGCGGATGCATAAATTTCAGACTACGAAAACAATTTTAGAGTTTTCAAATATGCTTTTCCATCATATTCTGAAATCCGAAAAAATCCAAAATGTAATTTTTTTCAAAAATATTTGTTTGGAATTTTTGTAGTTTTTAGGATGTGTTCCATCAGAAAAAAAGCATATTTGAAAAATCTAAAATTGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>402 280 184 64 38 32</canonical_bands>
                <polymorphic_bands>440 280 184 64 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGACGTTTGTGGAAATTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTCGTAGTCTGAAATTTATGC</pcr_primer_p2>
		<pcr_amplicon_size>402</pcr_amplicon_size>
		<canonical_amplicon>GAAGACGTTTGTGGAAATTGCATTCAACCGTACCGAACAAACGGTAATTTTTCAGAGGCTTTTTTTATTTACAATACTGGTCAATCAGATTTTTGGCCATTTTGACCATTTACAGAAGTCTAGAGGTCTGCTGTCAAGTTTCCGATCACTTTGAAAGTTTTGGAGGGTGTAAAACAGACCTAGATTGAGCATTTGGCATTCACAGAACTTTTTGAAAACTCCTAGATTTTCAAACATTTGCCAATTTCTGAAAGGTACCCCTTTTTGACCTATTTTTGGGCTCCGCGGCACTTTGAAATTGTGACCCTTTAAAACTAGTCATTTCGAAACCAGTCTTTTCTAAACCGGTCATTTTGAAACCGTGGCAATACATGCGGATGCATAAATTTCAGACTACGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAAGACGTTTGTGGAAATTGCATTCAACCGTACCGAACAAACGGTAATTTTTCAGAGGCMTTTTTTATTTACAATACTGGTCAATCAGATTTTTGGCCATTTTGACCATTTACAGAAGTCTAGAGGTCTGCTGTCAAGTTTCCGATCACTTTGAAAGTTTTGGAGGGTGTAAAACAGACCTAGATTGAGCATTTGGCATTCACAGAACTTTTTGAAAACTCCTAGATTTTCAAACATTTGCCAATTTCTGAAAGGTACCCCTTTTTGACCTATTTTTGGGCTCCGCGGCACTTTGAAATTGTGACCCTTTAAAACTAGTCATTTCGAAACCAGTCTTTTCTAAACCGGTCATTTTGAAACCGTGGCAATACATGCGGATGCATAAATTTCAGACTACGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33795</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>431784</contig_pos>
        <strand></strand>
        <context>tggagggtgt[A/G]aaacagacct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGAGGTCTGCTGTCAAGTTTCCGATCACTTTGAAAGTTTTGGAGGGTGT</left_flank>
        <right_flank>AAACAGACCTAGATTGAGCATTTGGCATTCACAGAACTTTTTGAAAACTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGTATGATAACTTCTGAACTTGACAATTAATTCGGAGGGTGCAAAGAGTTAAGGGTCATTAGGGTACAAGACATTTTAGGGTTACAAAATACCTGAAAAAATCCGACCTTTGTACCCCCGAATCGTGGATTTTGTATCCCTAAATCACGTTATACCCCTTTGTGCCCCCGAACTGCTGTACCCTTCGAATAATCTGCATATCTTCTGGACTTTGATTTTGAAAATATTTTGACAAATTTCAGACATGACTCCGGAAATCTCCCGAATCGTTAAATTCAAGGAGAATGGATATCTGAAATATGAAAATTTGAATATGGATGTGAGAGAGAAGACGTTTGTGGAAATTGCATTCAACCGTACCGAACAAACGGTAATTTTTCAGAGGCTTTTTTTATTTACAATACTGGTCAATCAGATTTTTGGCCATTTTGACCATTTACAGAAGTCTAGAGGTCTGCTGTCAAGTTTCCGATCACTTTGAAAGTTTTGGAGGGTGTAAAACAGACCTAGATTGAGCATTTGGCATTCACAGAACTTTTTGAAAACTCCTAGATTTTCAAACATTTGCCAATTTCTGAAAGGTACCCCTTTTTGACCTATTTTTGGGCTCCGCGGCACTTTGAAATTGTGACCCTTTAAAACTAGTCATTTCGAAACCAGTCTTTTCTAAACCGGTCATTTTGAAACCGTGGCAATACATGCGGATGCATAAATTTCAGACTACGAAAACAATTTTAGAGTTTTCAAATATGCTTTTCCATCATATTCTGAAATCCGAAAAAATCCAAAATGTAATTTTTTTCAAAAATATTTGTTTGGAATTTTTGTAGTTTTTAGGATGTGTTCCATCAGAAAAAAAGCATATTTGAAAAATCTAAAATTGTTTTTGTAATCTGAAATTCATCCATTCGCCTGTATTACTACGGTTTTGAAGTGGCCGGTTTCGAAATGACTGGTTTCGAAGTGTCGCAGTTTTGAAGTGAGATGGAGTCTGTTTT</canonical>
            <polymorphic>TCTGTATGATAACTTCTGAACTTGACAATTAATTCGGAGGGTGCAAAGAGTTAAGGGTCATTAGGGTACAAGACATTTTAGGGTTACAAAATACCTGAAAAAATCCGACCTTTGTACCCCCGAATCGTGGATTTTGTATCCCTAAATCACGTTATACCCCTTTGTGCCCCCGAACTGCTGTACCCTTCGAATAATCTGCATATCTTCTGGACTTTGATTTTGAAAATATTTTGACAAATTTCAGACATGACTCCGGAAATCTCCCGAATCGTTAAATTCAAGGAGAATGGATATCTGAAATATGAAAATTTGAATATGGATGTGAGAGAGAAGACGTTTGTGGAAATTGCATTCAACCGTACCGAACAAACGGTAATTTTTCAGAGGCTTTTTTTATTTACAATACTGGTCAATCAGATTTTTGGCCATTTTGACCATTTACAGAAGTCTAGAGGTCTGCTGTCAAGTTTCCGATCACTTTGAAAGTTTTGGAGGGTGTRAAACAGACCTAGATTGAGCATTTGGCATTCACAGAACTTTTTGAAAACTCCTAGATTTTCAAACATTTGCCAATTTCTGAAAGGTACCCCTTTTTGACCTATTTTTGGGCTCCGCGGCACTTTGAAATTGTGACCCTTTAAAACTAGTCATTTCGAAACCAGTCTTTTCTAAACCGGTCATTTTGAAACCGTGGCAATACATGCGGATGCATAAATTTCAGACTACGAAAACAATTTTAGAGTTTTCAAATATGCTTTTCCATCATATTCTGAAATCCGAAAAAATCCAAAATGTAATTTTTTTCAAAAATATTTGTTTGGAATTTTTGTAGTTTTTAGGATGTGTTCCATCAGAAAAAAAGCATATTTGAAAAATCTAAAATTGTTTTTGTAATCTGAAATTCATCCATTCGCCTGTATTACTACGGTTTTGAAGTGGCCGGTTTCGAAATGACTGGTTTCGAAGTGTCGCAGTTTTGAAGTGAGATGGAGTCTGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAACAAACGGTAATTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTCGTAGTCTGAAATTTATGC</pcr_primer_p2>
		<pcr_amplicon_size>369</pcr_amplicon_size>
		<canonical_amplicon>CGAACAAACGGTAATTTTTCAGAGGCTTTTTTTATTTACAATACTGGTCAATCAGATTTTTGGCCATTTTGACCATTTACAGAAGTCTAGAGGTCTGCTGTCAAGTTTCCGATCACTTTGAAAGTTTTGGAGGGTGTAAAACAGACCTAGATTGAGCATTTGGCATTCACAGAACTTTTTGAAAACTCCTAGATTTTCAAACATTTGCCAATTTCTGAAAGGTACCCCTTTTTGACCTATTTTTGGGCTCCGCGGCACTTTGAAATTGTGACCCTTTAAAACTAGTCATTTCGAAACCAGTCTTTTCTAAACCGGTCATTTTGAAACCGTGGCAATACATGCGGATGCATAAATTTCAGACTACGAAAA</canonical_amplicon>
		<polymorphic_amplicon>CGAACAAACGGTAATTTTTCAGAGGCTTTTTTTATTTACAATACTGGTCAATCAGATTTTTGGCCATTTTGACCATTTACAGAAGTCTAGAGGTCTGCTGTCAAGTTTCCGATCACTTTGAAAGTTTTGGAGGGTGTRAAACAGACCTAGATTGAGCATTTGGCATTCACAGAACTTTTTGAAAACTCCTAGATTTTCAAACATTTGCCAATTTCTGAAAGGTACCCCTTTTTGACCTATTTTTGGGCTCCGCGGCACTTTGAAATTGTGACCCTTTAAAACTAGTCATTTCGAAACCAGTCTTTTCTAAACCGGTCATTTTGAAACCGTGGCAATACATGCGGATGCATAAATTTCAGACTACGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33796</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>432974</contig_pos>
        <strand>+</strand>
        <context>TCTGTGAGTA[A/C]TTTTTTCCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCAGGAGCTCAGAATTAATGAGCTACCCGTCAATTTGATTTCTGTGAGTA</left_flank>
        <right_flank>TTTTTTCCAGCCGACAATTATATTTTAGCGGCGAACAATTGAAAACTACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAACTGAAAATATGCCTTTCTACACCTTATCGAACGGTGATGTATATCTTTTTCATTTCAGGCCTCTTGTTTTATTGGTCTGTTCCATCTGATCCTCACACCGATTTCATCGCATTTGCCATGATCGACGCAAAGCCGCATTTCGTGTATGAGCTCGGATCCGGATTATCCTATATTCGGTATTCTATAAACTCTAATATCTCATCTCATCTTATTATTCAGAGGAGAACCGATCCCATTGAACTCTTGGCATACTGTAAGAATTGAGCGATTCGCCAAAGACGTTTCAATGTATGTCAACGGAACACTTGCAAAGAAATACACATCGCAGAGCAAAAATGCGCATCTGGATATTCTGAAAAACGATGTTCTGTTCGTTGGATTTGTGCCAAATGGAGAGATTTCTCATAAAGTTCGAAAGTTGAATGTTCCATTCGAAGGAGAGCTTCAGGAGCTCAGAATTAATGAGCTACCCGTCAATTTGATTTCTGTGAGTATTTTTTTCCAGCCGACAATTATATTTTAGCGGCGAACAATTGAAAACTACCCGTTATTATATTTTTGTTTTGGCTTTCTTCTGCGTGAGATTATGGCAGCATTAGACGACGCCTTCTGAATCTCAGCTTTTCAAAAAAAAACAAAAAAGCGAGTCATATGATTTCATTACGTTGAGTGTAAATGTTTTGAATAATGAATGAGGGAGAATGTGTTGCAAAACCTTAAAAAGAAGGAGCAGCTGACAGCCTAGAGTTCCATTTTAGGTTGATTAAATGACATCGAGGTCAAAGAGTTGAGTTATTCTTGGAGTCAGACATCCAACGAAACAAGATGATTCTTGATGTGATGGGAGAGTACTTTTTTGATAAATTGGGTTTTAGATATTCTGATATATTGACATCATCATAAGGAGAGAAAAATCATTATCATGGGATCATCAGAGATCATAATTTCGAAAACTTGGAAATATGTCTTCGGGAATTAGTAAATGTTTTGTAACA</canonical>
            <polymorphic>ATCAACTGAAAATATGCCTTTCTACACCTTATCGAACGGTGATGTATATCTTTTTCATTTCAGGCCTCTTGTTTTATTGGTCTGTTCCATCTGATCCTCACACCGATTTCATCGCATTTGCCATGATCGACGCAAAGCCGCATTTCGTGTATGAGCTCGGATCCGGATTATCCTATATTCGGTATTCTATAAACTCTAATATCTCATCTCATCTTATTATTCAGAGGAGAACCGATCCCATTGAACTCTTGGCATACTGTAAGAATTGAGCGATTCGCCAAAGACGTTTCAATGTATGTCAACGGAACACTTGCAAAGAAATACACATCGCAGAGCAAAAATGCGCATCTGGATATTCTGAAAAACGATGTTCTGTTCGTTGGATTTGTGCCAAATGGAGAGATTTCTCATAAAGTTCGAAAGTTGAATGTTCCATTCGAAGGAGAGCTTCAGGAGCTCAGAATTAATGAGCTACCCGTCAATTTGATTTCTGTGAGTAMTTTTTTCCAGCCGACAATTATATTTTAGCGGCGAACAATTGAAAACTACCCGTTATTATATTTTTGTTTTGGCTTTCTTCTGCGTGAGATTATGGCAGCATTAGACGACGCCTTCTGAATCTCAGCTTTTCAAAAAAAAACAAAAAAGCGAGTCATATGATTTCATTACGTTGAGTGTAAATGTTTTGAATAATGAATGAGGGAGAATGTGTTGCAAAACCTTAAAAAGAAGGAGCAGCTGACAGCCTAGAGTTCCATTTTAGGTTGATTAAATGACATCGAGGTCAAAGAGTTGAGTTATTCTTGGAGTCAGACATCCAACGAAACAAGATGATTCTTGATGTGATGGGAGAGTACTTTTTTGATAAATTGGGTTTTAGATATTCTGATATATTGACATCATCATAAGGAGAGAAAAATCATTATCATGGGATCATCAGAGATCATAATTTCGAAAACTTGGAAATATGTCTTCGGGAATTAGTAAATGTTTTGTAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTTGCAAAGAAATACACATC</pcr_primer_p1>
		<pcr_primer_p2>ATAACGGGTAGTTTTCAATTGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CACTTGCAAAGAAATACACATCGCAGAGCAAAAATGCGCATCTGGATATTCTGAAAAACGATGTTCTGTTCGTTGGATTTGTGCCAAATGGAGAGATTTCTCATAAAGTTCGAAAGTTGAATGTTCCATTCGAAGGAGAGCTTCAGGAGCTCAGAATTAATGAGCTACCCGTCAATTTGATTTCTGTGAGTATTTTTTTCCAGCCGACAATTATATTTTAGCGGCGAACAATTGAAAACTACCCGTTAT</canonical_amplicon>
		<polymorphic_amplicon>CACTTGCAAAGAAATACACATCGCAGAGCAAAAATGCGCATCTGGATATTCTGAAAAACGATGTTCTGTTCGTTGGATTTGTGCCAAATGGAGAGATTTCTCATAAAGTTCGAAAGTTGAATGTTCCATTCGAAGGAGAGCTTCAGGAGCTCAGAATTAATGAGCTACCCGTCAATTTGATTTCTGTGAGTAMTTTTTTCCAGCCGACAATTATATTTTAGCGGCGAACAATTGAAAACTACCCGTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33797</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>432989</contig_pos>
        <strand></strand>
        <context>TTCCAGCCGA[C/A]AATTATATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TAATGAGCTACCCGTCAATTTGATTTCTGTGAGTATTTTTTTCCAGCCGA</left_flank>
        <right_flank>AATTATATTTTAGCGGCGAACAATTGAAAACTACCCGTTATTATATTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCTTTCTACACCTTATCGAACGGTGATGTATATCTTTTTCATTTCAGGCCTCTTGTTTTATTGGTCTGTTCCATCTGATCCTCACACCGATTTCATCGCATTTGCCATGATCGACGCAAAGCCGCATTTCGTGTATGAGCTCGGATCCGGATTATCCTATATTCGGTATTCTATAAACTCTAATATCTCATCTCATCTTATTATTCAGAGGAGAACCGATCCCATTGAACTCTTGGCATACTGTAAGAATTGAGCGATTCGCCAAAGACGTTTCAATGTATGTCAACGGAACACTTGCAAAGAAATACACATCGCAGAGCAAAAATGCGCATCTGGATATTCTGAAAAACGATGTTCTGTTCGTTGGATTTGTGCCAAATGGAGAGATTTCTCATAAAGTTCGAAAGTTGAATGTTCCATTCGAAGGAGAGCTTCAGGAGCTCAGAATTAATGAGCTACCCGTCAATTTGATTTCTGTGAGTATTTTTTTCCAGCCGACAATTATATTTTAGCGGCGAACAATTGAAAACTACCCGTTATTATATTTTTGTTTTGGCTTTCTTCTGCGTGAGATTATGGCAGCATTAGACGACGCCTTCTGAATCTCAGCTTTTCAAAAAAAAACAAAAAAGCGAGTCATATGATTTCATTACGTTGAGTGTAAATGTTTTGAATAATGAATGAGGGAGAATGTGTTGCAAAACCTTAAAAAGAAGGAGCAGCTGACAGCCTAGAGTTCCATTTTAGGTTGATTAAATGACATCGAGGTCAAAGAGTTGAGTTATTCTTGGAGTCAGACATCCAACGAAACAAGATGATTCTTGATGTGATGGGAGAGTACTTTTTTGATAAATTGGGTTTTAGATATTCTGATATATTGACATCATCATAAGGAGAGAAAAATCATTATCATGGGATCATCAGAGATCATAATTTCGAAAACTTGGAAATATGTCTTCGGGAATTAGTAAATGTTTTGTAACACTCCTAACTTTGAGC</canonical>
            <polymorphic>GCCTTTCTACACCTTATCGAACGGTGATGTATATCTTTTTCATTTCAGGCCTCTTGTTTTATTGGTCTGTTCCATCTGATCCTCACACCGATTTCATCGCATTTGCCATGATCGACGCAAAGCCGCATTTCGTGTATGAGCTCGGATCCGGATTATCCTATATTCGGTATTCTATAAACTCTAATATCTCATCTCATCTTATTATTCAGAGGAGAACCGATCCCATTGAACTCTTGGCATACTGTAAGAATTGAGCGATTCGCCAAAGACGTTTCAATGTATGTCAACGGAACACTTGCAAAGAAATACACATCGCAGAGCAAAAATGCGCATCTGGATATTCTGAAAAACGATGTTCTGTTCGTTGGATTTGTGCCAAATGGAGAGATTTCTCATAAAGTTCGAAAGTTGAATGTTCCATTCGAAGGAGAGCTTCAGGAGCTCAGAATTAATGAGCTACCCGTCAATTTGATTTCTGTGAGTATTTTTTTCCAGCCGAMAATTATATTTTAGCGGCGAACAATTGAAAACTACCCGTTATTATATTTTTGTTTTGGCTTTCTTCTGCGTGAGATTATGGCAGCATTAGACGACGCCTTCTGAATCTCAGCTTTTCAAAAAAAAACAAAAAAGCGAGTCATATGATTTCATTACGTTGAGTGTAAATGTTTTGAATAATGAATGAGGGAGAATGTGTTGCAAAACCTTAAAAAGAAGGAGCAGCTGACAGCCTAGAGTTCCATTTTAGGTTGATTAAATGACATCGAGGTCAAAGAGTTGAGTTATTCTTGGAGTCAGACATCCAACGAAACAAGATGATTCTTGATGTGATGGGAGAGTACTTTTTTGATAAATTGGGTTTTAGATATTCTGATATATTGACATCATCATAAGGAGAGAAAAATCATTATCATGGGATCATCAGAGATCATAATTTCGAAAACTTGGAAATATGTCTTCGGGAATTAGTAAATGTTTTGTAACACTCCTAACTTTGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTGGATATTCTGAAAAACGAT</pcr_primer_p1>
		<pcr_primer_p2>CATAATCTCACGCAGAAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATCTGGATATTCTGAAAAACGATGTTCTGTTCGTTGGATTTGTGCCAAATGGAGAGATTTCTCATAAAGTTCGAAAGTTGAATGTTCCATTCGAAGGAGAGCTTCAGGAGCTCAGAATTAATGAGCTACCCGTCAATTTGATTTCTGTGAGTATTTTTTTCCAGCCGACAATTATATTTTAGCGGCGAACAATTGAAAACTACCCGTTATTATATTTTTGTTTTGGCTTTCTTCTGCGTGAGATTATG</canonical_amplicon>
		<polymorphic_amplicon>ATCTGGATATTCTGAAAAACGATGTTCTGTTCGTTGGATTTGTGCCAAATGGAGAGATTTCTCATAAAGTTCGAAAGTTGAATGTTCCATTCGAAGGAGAGCTTCAGGAGCTCAGAATTAATGAGCTACCCGTCAATTTGATTTCTGTGAGTATTTTTTTCCAGCCGAMAATTATATTTTAGCGGCGAACAATTGAAAACTACCCGTTATTATATTTTTGTTTTGGCTTTCTTCTGCGTGAGATTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33798</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>433349</contig_pos>
        <strand>+</strand>
        <context>ATAAATTGGG[G/T]TTTAGATATT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACAAGATGATTCTTGATGTGATGGGAGAGTACTTTTTTGATAAATTGGG</left_flank>
        <right_flank>TTTAGATATTCTGATATATTGACATCATCATAAGGAGAGAAAAATCATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGTTGGATTTGTGCCAAATGGAGAGATTTCTCATAAAGTTCGAAAGTTGAATGTTCCATTCGAAGGAGAGCTTCAGGAGCTCAGAATTAATGAGCTACCCGTCAATTTGATTTCTGTGAGTATTTTTTTCCAGCCGACAATTATATTTTAGCGGCGAACAATTGAAAACTACCCGTTATTATATTTTTGTTTTGGCTTTCTTCTGCGTGAGATTATGGCAGCATTAGACGACGCCTTCTGAATCTCAGCTTTTCAAAAAAAAACAAAAAAGCGAGTCATATGATTTCATTACGTTGAGTGTAAATGTTTTGAATAATGAATGAGGGAGAATGTGTTGCAAAACCTTAAAAAGAAGGAGCAGCTGACAGCCTAGAGTTCCATTTTAGGTTGATTAAATGACATCGAGGTCAAAGAGTTGAGTTATTCTTGGAGTCAGACATCCAACGAAACAAGATGATTCTTGATGTGATGGGAGAGTACTTTTTTGATAAATTGGGTTTTAGATATTCTGATATATTGACATCATCATAAGGAGAGAAAAATCATTATCATGGGATCATCAGAGATCATAATTTCGAAAACTTGGAAATATGTCTTCGGGAATTAGTAAATGTTTTGTAACACTCCTAACTTTGAGCCAATTTTTCTCGGTCCCTGTCAAAGATTTAAAAAAGTTGTCAACTTATAAACTGTTAATCAAAATATCACAAACATTTTATCATTTAACACATTTTTGATAACTTGCATAGGAATTGAGATAAATTAGCTCAAGTTGACATTATGGGAGCTCTTCTATTACAGGTTTTAGCTATGTGAGGGTTTAGGTAAGGATTGGAAATCTCCTGGATTTTGAAAGTTTTCAAAAATTCAAAAAGTATTGAATAGCTCTTAAAAAGCGCTACACAATCATATAAAAACAATCTTATTTAATTTTTGTAAATTTTGAAAGTCATTTGAAAAATGGGTCTAAACCTGATTTTGTAAACATTCCAGTGTCT</canonical>
            <polymorphic>TTCGTTGGATTTGTGCCAAATGGAGAGATTTCTCATAAAGTTCGAAAGTTGAATGTTCCATTCGAAGGAGAGCTTCAGGAGCTCAGAATTAATGAGCTACCCGTCAATTTGATTTCTGTGAGTATTTTTTTCCAGCCGACAATTATATTTTAGCGGCGAACAATTGAAAACTACCCGTTATTATATTTTTGTTTTGGCTTTCTTCTGCGTGAGATTATGGCAGCATTAGACGACGCCTTCTGAATCTCAGCTTTTCAAAAAAAAACAAAAAAGCGAGTCATATGATTTCATTACGTTGAGTGTAAATGTTTTGAATAATGAATGAGGGAGAATGTGTTGCAAAACCTTAAAAAGAAGGAGCAGCTGACAGCCTAGAGTTCCATTTTAGGTTGATTAAATGACATCGAGGTCAAAGAGTTGAGTTATTCTTGGAGTCAGACATCCAACGAAACAAGATGATTCTTGATGTGATGGGAGAGTACTTTTTTGATAAATTGGGKTTTAGATATTCTGATATATTGACATCATCATAAGGAGAGAAAAATCATTATCATGGGATCATCAGAGATCATAATTTCGAAAACTTGGAAATATGTCTTCGGGAATTAGTAAATGTTTTGTAACACTCCTAACTTTGAGCCAATTTTTCTCGGTCCCTGTCAAAGATTTAAAAAAGTTGTCAACTTATAAACTGTTAATCAAAATATCACAAACATTTTATCATTTAACACATTTTTGATAACTTGCATAGGAATTGAGATAAATTAGCTCAAGTTGACATTATGGGAGCTCTTCTATTACAGGTTTTAGCTATGTGAGGGTTTAGGTAAGGATTGGAAATCTCCTGGATTTTGAAAGTTTTCAAAAATTCAAAAAGTATTGAATAGCTCTTAAAAAGCGCTACACAATCATATAAAAACAATCTTATTTAATTTTTGTAAATTTTGAAAGTCATTTGAAAAATGGGTCTAAACCTGATTTTGTAAACATTCCAGTGTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCCTAGAGTTCCATTTTAGGT</pcr_primer_p1>
		<pcr_primer_p2>AACATTTACTAATTCCCGAAGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGCCTAGAGTTCCATTTTAGGTTGATTAAATGACATCGAGGTCAAAGAGTTGAGTTATTCTTGGAGTCAGACATCCAACGAAACAAGATGATTCTTGATGTGATGGGAGAGTACTTTTTTGATAAATTGGGTTTTAGATATTCTGATATATTGACATCATCATAAGGAGAGAAAAATCATTATCATGGGATCATCAGAGATCATAATTTCGAAAACTTGGAAATATGTCTTCGGGAATTAGTAAATGTT</canonical_amplicon>
		<polymorphic_amplicon>AGCCTAGAGTTCCATTTTAGGTTGATTAAATGACATCGAGGTCAAAGAGTTGAGTTATTCTTGGAGTCAGACATCCAACGAAACAAGATGATTCTTGATGTGATGGGAGAGTACTTTTTTGATAAATTGGGKTTTAGATATTCTGATATATTGACATCATCATAAGGAGAGAAAAATCATTATCATGGGATCATCAGAGATCATAATTTCGAAAACTTGGAAATATGTCTTCGGGAATTAGTAAATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33799</snp_id>
        <super_contig>c008500728.Contig4</super_contig>
        <contig_pos>436559</contig_pos>
        <strand>+</strand>
        <context>cttAACCCAG[C/T]TAAAAATGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAGCTTTCGAGATATGCGCCTTTAAATTATTGCGCGCCACTTAACCCAG</left_flank>
        <right_flank>TAAAAATGGAGTCATCTTTTTTTTTCTTAATTTCCTTATCCAAACTCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACAATGGTGTAAACTAAAAAAATGTAGATCTTAAAATTTTACATTTTTAGTAGTTAGAAAAATTTTTATAGCATTTTTAGTTTCCGAGCTATGCGCCTTTAAAGTACGCGTGCCTCTTCCCTTGTCTATGTTTCTCACTGCGCGGAAATTCAAATCCTCGTAACCACCTTTGTTAACCACCTTTGCTATAATTTTGAATTTTTTTCGAAGATTTCGGACGTTTTTTTTTAAATTTTTCTTCAATAATATTTGGAAAATACATTTGTTAAAACGTTTTACTACAATGAAAATTTCGAATCGGAGTCTTCGTTTCACCTTAAAAAAAGCAAACTCTTTGATCCGTTATATCTCAAAAACTACTGTAGTTATCATAATGGTGTAAACTAAAAAAATATATATTTTGAAATTTGAAACCTTTTGTTAGTTGGCAAAATGTTTCTAGCTTTCTTAGCTTTCGAGATATGCGCCTTTAAATTATTGCGCGCCACTTAACCCAGCTAAAAATGGAGTCATCTTTTTTTTTCTTAATTTCCTTATCCAAACTCTGATTTCCGATTCGATTTCTTTTGCCTCCGATATCATTTCCTTATTTTATTTTGAATGACTAAACATTTTCTGCATTTTCTGTGTTTGAGTTTTCATTCGAGCATCAAACCATACAATTTTAATTCATTTTATCCTTTTTGAAGAACAAACCACATTAGTATTCCACCCACACCCGTGTTCAAATGTTTATTGGGGGCCTTTTGAATCCTTCTTTTTTCAGAAAAATTTGATTAGATTTTTAAAAGAAAATGAAATTGAATGGATTCAAGAATCTTAATAAATCTCAATCACCAATTGAATAGGAACACAAAGAAGAAGCTGAAAAAACCAATTATCCGGAAAAAATTAGAAAATAATAAAAAATCCATTTTTCAGGGAGTATCAAGCGAGGAAATGGAACGGATTGATTTGAAGGAAACGGATGAAAAGGAGTGTTCGAAATGCGATGGTGC</canonical>
            <polymorphic>TCACAATGGTGTAAACTAAAAAAATGTAGATCTTAAAATTTTACATTTTTAGTAGTTAGAAAAATTTTTATAGCATTTTTAGTTTCCGAGCTATGCGCCTTTAAAGTACGCGTGCCTCTTCCCTTGTCTATGTTTCTCACTGCGCGGAAATTCAAATCCTCGTAACCACCTTTGTTAACCACCTTTGCTATAATTTTGAATTTTTTTCGAAGATTTCGGACGTTTTTTTTTAAATTTTTCTTCAATAATATTTGGAAAATACATTTGTTAAAACGTTTTACTACAATGAAAATTTCGAATCGGAGTCTTCGTTTCACCTTAAAAAAAGCAAACTCTTTGATCCGTTATATCTCAAAAACTACTGTAGTTATCATAATGGTGTAAACTAAAAAAATATATATTTTGAAATTTGAAACCTTTTGTTAGTTGGCAAAATGTTTCTAGCTTTCTTAGCTTTCGAGATATGCGCCTTTAAATTATTGCGCGCCACTTAACCCAGYTAAAAATGGAGTCATCTTTTTTTTTCTTAATTTCCTTATCCAAACTCTGATTTCCGATTCGATTTCTTTTGCCTCCGATATCATTTCCTTATTTTATTTTGAATGACTAAACATTTTCTGCATTTTCTGTGTTTGAGTTTTCATTCGAGCATCAAACCATACAATTTTAATTCATTTTATCCTTTTTGAAGAACAAACCACATTAGTATTCCACCCACACCCGTGTTCAAATGTTTATTGGGGGCCTTTTGAATCCTTCTTTTTTCAGAAAAATTTGATTAGATTTTTAAAAGAAAATGAAATTGAATGGATTCAAGAATCTTAATAAATCTCAATCACCAATTGAATAGGAACACAAAGAAGAAGCTGAAAAAACCAATTATCCGGAAAAAATTAGAAAATAATAAAAAATCCATTTTTCAGGGAGTATCAAGCGAGGAAATGGAACGGATTGATTTGAAGGAAACGGATGAAAAGGAGTGTTCGAAATGCGATGGTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>367 354 134 90 46 9</canonical_bands>
                <polymorphic_bands>413 354 134 90 9</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>354 245 134 122 90 46 9</canonical_bands>
                <polymorphic_bands>354 291 134 122 90 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGCAAACTCTTTGATCC</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAATCGAATCGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGCAAACTCTTTGATCCGTTATATCTCAAAAACTACTGTAGTTATCATAATGGTGTAAACTAAAAAAATATATATTTTGAAATTTGAAACCTTTTGTTAGTTGGCAAAATGTTTCTAGCTTTCTTAGCTTTCGAGATATGCGCCTTTAAATTATTGCGCGCCACTTAACCCAGCTAAAAATGGAGTCATCTTTTTTTTTCTTAATTTCCTTATCCAAACTCTGATTTCCGATTCGATTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGCAAACTCTTTGATCCGTTATATCTCAAAAACTACTGTAGTTATCATAATGGTGTAAACTAAAAAAATATATATTTTGAAATTTGAAACCTTTTGTTAGTTGGCAAAATGTTTCTAGCTTTCTTAGCTTTCGAGATATGCGCCTTTAAATTATTGCGCGCCACTTAACCCAGYTAAAAATGGAGTCATCTTTTTTTTTCTTAATTTCCTTATCCAAACTCTGATTTCCGATTCGATTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33800</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>19548</contig_pos>
        <strand>+</strand>
        <context>CCTTGCGAAT[A/G]AAAAAAAGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCACACCGTCAATCAAATTGTCGTTTTTTTCTCTTCTTTCCTTGCGAAT</left_flank>
        <right_flank>AAAAAAAGCTGCCGATTCTTCTGCGCCGATAATGAAGTGAAATTGAGTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTATAACATCAGCTTTTTTATTACGGTTGGTGAAGAGCAATTTAAGCTCACCCTGGACCATGGTGAAACCTGCAGGTTCCTGGTTTTGACAACTTTGCTCATAGCTGAAGCGCTCCCCATTCGGATTAGTTTAGAACTCCCGAATCATCACGTCACATCCTCGAATCCTCTATCACAAAATCTGCTCACCATTTGAATTGTTCTTCACAAAGTCCCGCCTCCATTCCATGCAGTTTGTGTTGTGGTTCTCACTAAATCATCATGATAAACATCTGTATTTCCTTTGCTCTTTGCCGCCCATAAAAAGCGAGTAAAAGTAATGCTATTAGCTGTGGATCAAAAACCTTCGCGGTTTTTTTCGTTTCTTGACTCTGAAATATTTCCCCCTCAGGATGAGTCACAAGTTTCCCTCATCTCCTCTGCTTCTAAAAGAAACATGCACATCTTTTCACACCGTCAATCAAATTGTCGTTTTTTTCTCTTCTTTCCTTGCGAATAAAAAAAAGCTGCCGATTCTTCTGCGCCGATAATGAAGTGAAATTGAGTCTTTTTCTAATGAAAAGGCATAAAGAAAAAAGAAAAAAATCTTGTTTTTAGAATTCCGAATTAATTTTATTGTTCTGGAAGGAGTAACCTGAATTCTTGGTATACGCGTCCGGAAGTCATCCCCTCTTCAGGAAAACCTGTTTTCGGTTTTTGTGCTAGTACGGAACAAAAATAAGTATTCCAATCCAACCAAAAGGAATACGTGTATGGTCGTTTACCTCAATTGTCTCTCTTTTTCACATGGAGATAATCTGGAAGTTTATACGGCTGAACTATCCGAATAATTTAATATTCCAAAAACTGAGAAGCAATATTCTGGGAGCGGTGCTCCAGCACCATTTTTTATTCTCTTTTGCTTGCTTTCTTGGCCGAGAATAACTAGTGAACTAGAGTGAAAAGGAGCACATTGTTCCAAAAGGGGACATATTGTGTGTTGATGTTAACTATTGTAG</canonical>
            <polymorphic>TGGTATAACATCAGCTTTTTTATTACGGTTGGTGAAGAGCAATTTAAGCTCACCCTGGACCATGGTGAAACCTGCAGGTTCCTGGTTTTGACAACTTTGCTCATAGCTGAAGCGCTCCCCATTCGGATTAGTTTAGAACTCCCGAATCATCACGTCACATCCTCGAATCCTCTATCACAAAATCTGCTCACCATTTGAATTGTTCTTCACAAAGTCCCGCCTCCATTCCATGCAGTTTGTGTTGTGGTTCTCACTAAATCATCATGATAAACATCTGTATTTCCTTTGCTCTTTGCCGCCCATAAAAAGCGAGTAAAAGTAATGCTATTAGCTGTGGATCAAAAACCTTCGCGGTTTTTTTCGTTTCTTGACTCTGAAATATTTCCCCCTCAGGATGAGTCACAAGTTTCCCTCATCTCCTCTGCTTCTAAAAGAAACATGCACATCTTTTCACACCGTCAATCAAATTGTCGTTTTTTTCTCTTCTTTCCTTGCGAATRAAAAAAAGCTGCCGATTCTTCTGCGCCGATAATGAAGTGAAATTGAGTCTTTTTCTAATGAAAAGGCATAAAGAAAAAAGAAAAAAATCTTGTTTTTAGAATTCCGAATTAATTTTATTGTTCTGGAAGGAGTAACCTGAATTCTTGGTATACGCGTCCGGAAGTCATCCCCTCTTCAGGAAAACCTGTTTTCGGTTTTTGTGCTAGTACGGAACAAAAATAAGTATTCCAATCCAACCAAAAGGAATACGTGTATGGTCGTTTACCTCAATTGTCTCTCTTTTTCACATGGAGATAATCTGGAAGTTTATACGGCTGAACTATCCGAATAATTTAATATTCCAAAAACTGAGAAGCAATATTCTGGGAGCGGTGCTCCAGCACCATTTTTTATTCTCTTTTGCTTGCTTTCTTGGCCGAGAATAACTAGTGAACTAGAGTGAAAAGGAGCACATTGTTCCAAAAGGGGACATATTGTGTGTTGATGTTAACTATTGTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCGTTTCTTGACTCTGAAATA</pcr_primer_p1>
		<pcr_primer_p2>ATTCGGAATTCTAAAAACAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTCGTTTCTTGACTCTGAAATATTTCCCCCTCAGGATGAGTCACAAGTTTCCCTCATCTCCTCTGCTTCTAAAAGAAACATGCACATCTTTTCACACCGTCAATCAAATTGTCGTTTTTTTCTCTTCTTTCCTTGCGAATAAAAAAAAGCTGCCGATTCTTCTGCGCCGATAATGAAGTGAAATTGAGTCTTTTTCTAATGAAAAGGCATAAAGAAAAAAGAAAAAAATCTTGTTTTTAGAATTCCGAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCGTTTCTTGACTCTGAAATATTTCCCCCTCAGGATGAGTCACAAGTTTCCCTCATCTCCTCTGCTTCTAAAAGAAACATGCACATCTTTTCACACCGTCAATCAAATTGTCGTTTTTTTCTCTTCTTTCCTTGCGAATRAAAAAAAGCTGCCGATTCTTCTGCGCCGATAATGAAGTGAAATTGAGTCTTTTTCTAATGAAAAGGCATAAAGAAAAAAGAAAAAAATCTTGTTTTTAGAATTCCGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33801</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>25173</contig_pos>
        <strand>+</strand>
        <context>GAAAGTTTCC[C/T]AAAAAWMYCT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAAGACTCATCTGAGAATCCCATCAACTTCATGTATTCTGAAAGTTTCC</left_flank>
        <right_flank>AAAAAAACCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCTACTTTTGTGATCTTTTTGAGAGTTCGGTTTTTGTCTTGACTATCGGACACCTTTGAATAGCTCTTTGTGCTAAACCGCACTCTTTTGGGCCTGATTCACCAACATTCGTGCATGGCTTTCCCCGTGATCAGTTTCCTATATCATTTTTACACTGTAACCAACAAATTAACTCCCTACATTGTATGATTTTAACGTTCCAATAAAGCATGTAGACAAGATATGATGCATCGACCGGGAATGCTTCTCATTTGTTCAATGAACATGTTTCCTTATTCTCGACGATTGCTAACTCTGGTGTGTTCCAACATTACTTGTTGTAATTGGAGTCAGGGATGAATGTTATTGAAGATAAGATTACGATGAAGATAATTTGACGCATTTCTTTCCATGGTCTATGTTTCAGTTCCAGATTAGAAAAAAGTGAGGCGACTGAAAATTGGCGACGAAGACTCATCTGAGAATCCCATCAACTTCATGTATTCTGAAAGTTTCCAAAAAAAACCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTTTGAATGGGTCACGGATAATGGTTTTAATTGAACATAATTCGAAGTTCGTATATCTTCTTTGTATATGTAGTAGTCAGAAAAAATTGAAAAATAATTATGAAAAGAATTATGAATGGACATGTGAAACTTTTTTGATCTAAAACGAGTAAGATCAACAAAACACAAAAATAAGACTGGAGTCAATGAGCCATTATTCCCTCACACCCTTTCCTATTTTTCCTTATCACCTGTGCATTTTCTGCTCCTTTTTTTCCAGGGAATTCTGAGCTCAAAAATTGTGTGCCTACTCTTCATTCATCATGTCGCATTCTCTCTTTTTCGTTTTTCTTCTGTCCCACGTCTTCTTCTTCTTCTGGTCCCTTTCATTTTAAGGTAATTGGATTAATGTTATGCAAATGTGAGCTTTTTTTCAGCGTTGGAGGAGAGGAGAAAGAATGACTAAAAA</canonical>
            <polymorphic>TCTTCTACTTTTGTGATCTTTTTGAGAGTTCGGTTTTTGTCTTGACTATCGGACACCTTTGAATAGCTCTTTGTGCTAAACCGCACTCTTTTGGGCCTGATTCACCAACATTCGTGCATGGCTTTCCCCGTGATCAGTTTCCTATATCATTTTTACACTGTAACCAACAAATTAACTCCCTACATTGTATGATTTTAACGTTCCAATAAAGCATGTAGACAAGATATGATGCATCGACCGGGAATGCTTCTCATTTGTTCAATGAACATGTTTCCTTATTCTCGACGATTGCTAACTCTGGTGTGTTCCAACATTACTTGTTGTAATTGGAGTCAGGGATGAATGTTATTGAAGATAAGATTACGATGAAGATAATTTGACGCATTTCTTTCCATGGTCTATGTTTCAGTTCCAGATTAGAAAAAAGTGAGGCGACTGAAAATTGGCGACGAAGACTCATCTGAGAATCCCATCAACTTCATGTATTCTGAAAGTTTCCYAAAAAAACCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTTTGAATGGGTCACGGATAATGGTTTTAATTGAACATAATTCGAAGTTCGTATATCTTCTTTGTATATGTAGTAGTCAGAAAAAATTGAAAAATAATTATGAAAAGAATTATGAATGGACATGTGAAACTTTTTTGATCTAAAACGAGTAAGATCAACAAAACACAAAAATAAGACTGGAGTCAATGAGCCATTATTCCCTCACACCCTTTCCTATTTTTCCTTATCACCTGTGCATTTTCTGCTCCTTTTTTTCCAGGGAATTCTGAGCTCAAAAATTGTGTGCCTACTCTTCATTCATCATGTCGCATTCTCTCTTTTTCGTTTTTCTTCTGTCCCACGTCTTCTTCTTCTTCTGGTCCCTTTCATTTTAAGGTAATTGGATTAATGTTATGCAAATGTGAGCTTTTTTTCAGCGTTGGAGGAGAGGAGAAAGAATGACTAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAACATTACTTGTTGTAATTG</pcr_primer_p1>
		<pcr_primer_p2>AAAACTAATTTTTCAAAGAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCAACATTACTTGTTGTAATTGGAGTCAGGGATGAATGTTATTGAAGATAAGATTACGATGAAGATAATTTGACGCATTTCTTTCCATGGTCTATGTTTCAGTTCCAGATTAGAAAAAAGTGAGGCGACTGAAAATTGGCGACGAAGACTCATCTGAGAATCCCATCAACTTCATGTATTCTGAAAGTTTCCAAAAAAAACCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TCCAACATTACTTGTTGTAATTGGAGTCAGGGATGAATGTTATTGAAGATAAGATTACGATGAAGATAATTTGACGCATTTCTTTCCATGGTCTATGTTTCAGTTCCAGATTAGAAAAAAGTGAGGCGACTGAAAATTGGCGACGAAGACTCATCTGAGAATCCCATCAACTTCATGTATTCTGAAAGTTTCCYAAAAAAACCTGATTTCTAATTTTATAGTTTTCCTCTTCTTTGAAAAATTAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33802</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>26841</contig_pos>
        <strand>+</strand>
        <context>GCCCTTCTCR[A/G]AATTTGAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAACGGATAACATTAGTCATGATCTTTGAAAGTTTTTTTGCCCTTCTCG</left_flank>
        <right_flank>AATTTGAATCTTGTGGAGTTTGACATTTTCTTTTTCATATATTTTTCAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTTTTTTGGTTTCTCATTTTGCTCTTTTTTTGAAAGTAAATTATATTGTAAACCTTTCTAGGAATAACAAAAAAAGTTTTTTCTACTGGATTCTTAAAAATGTCAAAGTCATCTATAAATGGTAAAATGTGATTGGAAAACTCTGAAAGAGGATTTGAAAAACGATGTTTCGGTTCAAAAGGCAGAGACCTGAAAGGTGAGTTTTTTGAGACTTTGAATTTTACTAACGGTGTTAATTTGTGGAGGTTAAGAAAAATGAAATACCAGATTCTACAATATTCAAAAAACTGCACCGGGCCTTCATAATATCATCCTTTCCCAAAAAGTTCGAAGTTGTTCTATAGAGTATTTCGATTTTTCAGCAAATATGACGTTTGCCATCTCTGACACTTTAGCATAGATAAGGTGATCATATTCTGAATAATTGATGTCGGTAAGAAATCCGCTGAAACGGATAACATTAGTCATGATCTTTGAAAGTTTTTTTGCCCTTCTCGAAATTTGAATCTTGTGGAGTTTGACATTTTCTTTTTCATATATTTTTCAACAAGCTTGTAAATGTATGAAATCTGATCCAAACTACTAGATCATTCAGCAACAACAGATCATTGTATGGAATTTCGGATTTTTGTTAGTTTCATAGAATATTCAATTTGGTCCAAGGAAGATACAGAACATTGAAAGATAGCGAGTAAAATTAACGCATATTCCGAACACTCATTGTCTATAGTATTCCCAACTTCGAGTTTTTTTTCTAGAATTTCCGCATTTCAAAAAACCTAGATGACATCATTTAAACTTTTCGAAACGAATTTATTCCTTCTGGAACATTTATATCTCATTTACTCTTCGTTGTGCTTCATCCAATTCTCCATACTCCTCCTCCCACACATGTGACAATAGATCATCGCGAATCTCTCAAATTTATTGAGGGAAGAAAAACGGAGAATAAGAAAAGAGACATGTCTCGTCGTCCCGGTTTCTTTTTGAATGTGTGT</canonical>
            <polymorphic>CGTTTTTTTGGTTTCTCATTTTGCTCTTTTTTTGAAAGTAAATTATATTGTAAACCTTTCTAGGAATAACAAAAAAAGTTTTTTCTACTGGATTCTTAAAAATGTCAAAGTCATCTATAAATGGTAAAATGTGATTGGAAAACTCTGAAAGAGGATTTGAAAAACGATGTTTCGGTTCAAAAGGCAGAGACCTGAAAGGTGAGTTTTTTGAGACTTTGAATTTTACTAACGGTGTTAATTTGTGGAGGTTAAGAAAAATGAAATACCAGATTCTACAATATTCAAAAAACTGCACCGGGCCTTCATAATATCATCCTTTCCCAAAAAGTTCGAAGTTGTTCTATAGAGTATTTCGATTTTTCAGCAAATATGACGTTTGCCATCTCTGACACTTTAGCATAGATAAGGTGATCATATTCTGAATAATTGATGTCGGTAAGAAATCCGCTGAAACGGATAACATTAGTCATGATCTTTGAAAGTTTTTTTGCCCTTCTCGRAATTTGAATCTTGTGGAGTTTGACATTTTCTTTTTCATATATTTTTCAACAAGCTTGTAAATGTATGAAATCTGATCCAAACTACTAGATCATTCAGCAACAACAGATCATTGTATGGAATTTCGGATTTTTGTTAGTTTCATAGAATATTCAATTTGGTCCAAGGAAGATACAGAACATTGAAAGATAGCGAGTAAAATTAACGCATATTCCGAACACTCATTGTCTATAGTATTCCCAACTTCGAGTTTTTTTTCTAGAATTTCCGCATTTCAAAAAACCTAGATGACATCATTTAAACTTTTCGAAACGAATTTATTCCTTCTGGAACATTTATATCTCATTTACTCTTCGTTGTGCTTCATCCAATTCTCCATACTCCTCCTCCCACACATGTGACAATAGATCATCGCGAATCTCTCAAATTTATTGAGGGAAGAAAAACGGAGAATAAGAAAAGAGACATGTCTCGTCGTCCCGGTTTCTTTTTGAATGTGTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>282 218 142 118 111 77 52</canonical_bands>
                <polymorphic_bands>400 218 142 111 77 52</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>331 247 194 144 61 23</canonical_bands>
                <polymorphic_bands>391 331 194 61 23</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>468 261 89 86 68 28</canonical_bands>
                <polymorphic_bands>468 289 89 86 68</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATCTCTGACACTTTAGCATAG</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCCATACAATGATCTGTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CCATCTCTGACACTTTAGCATAGATAAGGTGATCATATTCTGAATAATTGATGTCGGTAAGAAATCCGCTGAAACGGATAACATTAGTCATGATCTTTGAAAGTTTTTTTGCCCTTCTCGAAATTTGAATCTTGTGGAGTTTGACATTTTCTTTTTCATATATTTTTCAACAAGCTTGTAAATGTATGAAATCTGATCCAAACTACTAGATCATTCAGCAACAACAGATCATTGTATGGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>CCATCTCTGACACTTTAGCATAGATAAGGTGATCATATTCTGAATAATTGATGTCGGTAAGAAATCCGCTGAAACGGATAACATTAGTCATGATCTTTGAAAGTTTTTTTGCCCTTCTCGRAATTTGAATCTTGTGGAGTTTGACATTTTCTTTTTCATATATTTTTCAACAAGCTTGTAAATGTATGAAATCTGATCCAAACTACTAGATCATTCAGCAACAACAGATCATTGTATGGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33803</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>26912</contig_pos>
        <strand>+</strand>
        <context>ATGTATGAAA[C/T]CTGATCCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGACATTTTCTTTTTCATATATTTTTCAACAAGCTTGTAAATGTATGAAA</left_flank>
        <right_flank>CTGATCCAAACTACTAGATCATTCAGCAACAACAGATCATTGTATGGAAT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAGTTTTTTCTACTGGATTCTTAAAAATGTCAAAGTCATCTATAAATGGTAAAATGTGATTGGAAAACTCTGAAAGAGGATTTGAAAAACGATGTTTCGGTTCAAAAGGCAGAGACCTGAAAGGTGAGTTTTTTGAGACTTTGAATTTTACTAACGGTGTTAATTTGTGGAGGTTAAGAAAAATGAAATACCAGATTCTACAATATTCAAAAAACTGCACCGGGCCTTCATAATATCATCCTTTCCCAAAAAGTTCGAAGTTGTTCTATAGAGTATTTCGATTTTTCAGCAAATATGACGTTTGCCATCTCTGACACTTTAGCATAGATAAGGTGATCATATTCTGAATAATTGATGTCGGTAAGAAATCCGCTGAAACGGATAACATTAGTCATGATCTTTGAAAGTTTTTTTGCCCTTCTCGAAATTTGAATCTTGTGGAGTTTGACATTTTCTTTTTCATATATTTTTCAACAAGCTTGTAAATGTATGAAATCTGATCCAAACTACTAGATCATTCAGCAACAACAGATCATTGTATGGAATTTCGGATTTTTGTTAGTTTCATAGAATATTCAATTTGGTCCAAGGAAGATACAGAACATTGAAAGATAGCGAGTAAAATTAACGCATATTCCGAACACTCATTGTCTATAGTATTCCCAACTTCGAGTTTTTTTTCTAGAATTTCCGCATTTCAAAAAACCTAGATGACATCATTTAAACTTTTCGAAACGAATTTATTCCTTCTGGAACATTTATATCTCATTTACTCTTCGTTGTGCTTCATCCAATTCTCCATACTCCTCCTCCCACACATGTGACAATAGATCATCGCGAATCTCTCAAATTTATTGAGGGAAGAAAAACGGAGAATAAGAAAAGAGACATGTCTCGTCGTCCCGGTTTCTTTTTGAATGTGTGTGTGTGTGCAAAAATGATAACAAGAGAGCAAAAGAAGAAGGAGAAGAAGAGCAGCTGTCCGGATCACAGGTC</canonical>
            <polymorphic>AAAAAAGTTTTTTCTACTGGATTCTTAAAAATGTCAAAGTCATCTATAAATGGTAAAATGTGATTGGAAAACTCTGAAAGAGGATTTGAAAAACGATGTTTCGGTTCAAAAGGCAGAGACCTGAAAGGTGAGTTTTTTGAGACTTTGAATTTTACTAACGGTGTTAATTTGTGGAGGTTAAGAAAAATGAAATACCAGATTCTACAATATTCAAAAAACTGCACCGGGCCTTCATAATATCATCCTTTCCCAAAAAGTTCGAAGTTGTTCTATAGAGTATTTCGATTTTTCAGCAAATATGACGTTTGCCATCTCTGACACTTTAGCATAGATAAGGTGATCATATTCTGAATAATTGATGTCGGTAAGAAATCCGCTGAAACGGATAACATTAGTCATGATCTTTGAAAGTTTTTTTGCCCTTCTCGAAATTTGAATCTTGTGGAGTTTGACATTTTCTTTTTCATATATTTTTCAACAAGCTTGTAAATGTATGAAAYCTGATCCAAACTACTAGATCATTCAGCAACAACAGATCATTGTATGGAATTTCGGATTTTTGTTAGTTTCATAGAATATTCAATTTGGTCCAAGGAAGATACAGAACATTGAAAGATAGCGAGTAAAATTAACGCATATTCCGAACACTCATTGTCTATAGTATTCCCAACTTCGAGTTTTTTTTCTAGAATTTCCGCATTTCAAAAAACCTAGATGACATCATTTAAACTTTTCGAAACGAATTTATTCCTTCTGGAACATTTATATCTCATTTACTCTTCGTTGTGCTTCATCCAATTCTCCATACTCCTCCTCCCACACATGTGACAATAGATCATCGCGAATCTCTCAAATTTATTGAGGGAAGAAAAACGGAGAATAAGAAAAGAGACATGTCTCGTCGTCCCGGTTTCTTTTTGAATGTGTGTGTGTGTGCAAAAATGATAACAAGAGAGCAAAAGAAGAAGGAGAAGAAGAGCAGCTGTCCGGATCACAGGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>358 241 153 88 75 52 33</canonical_bands>
                <polymorphic_bands>358 241 205 88 75 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTGAATCTTGTGGAGTTTG</pcr_primer_p1>
		<pcr_primer_p2>CGAAGTTGGGAATACTATAGACA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATTTGAATCTTGTGGAGTTTGACATTTTCTTTTTCATATATTTTTCAACAAGCTTGTAAATGTATGAAATCTGATCCAAACTACTAGATCATTCAGCAACAACAGATCATTGTATGGAATTTCGGATTTTTGTTAGTTTCATAGAATATTCAATTTGGTCCAAGGAAGATACAGAACATTGAAAGATAGCGAGTAAAATTAACGCATATTCCGAACACTCATTGTCTATAGTATTCCCAACTTCG</canonical_amplicon>
		<polymorphic_amplicon>AATTTGAATCTTGTGGAGTTTGACATTTTCTTTTTCATATATTTTTCAACAAGCTTGTAAATGTATGAAAYCTGATCCAAACTACTAGATCATTCAGCAACAACAGATCATTGTATGGAATTTCGGATTTTTGTTAGTTTCATAGAATATTCAATTTGGTCCAAGGAAGATACAGAACATTGAAAGATAGCGAGTAAAATTAACGCATATTCCGAACACTCATTGTCTATAGTATTCCCAACTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33804</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>26998</contig_pos>
        <strand>+</strand>
        <context>ATATTCAATT[C/T]GSTCCAAGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCATTGTATGGAATTTCGGATTTTTGTTAGTTTCATAGAATATTCAATT</left_flank>
        <right_flank>GGTCCAAGGAAGATACAGAACATTGAAAGATAGCGAGTAAAATTAACGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAAACGATGTTTCGGTTCAAAAGGCAGAGACCTGAAAGGTGAGTTTTTTGAGACTTTGAATTTTACTAACGGTGTTAATTTGTGGAGGTTAAGAAAAATGAAATACCAGATTCTACAATATTCAAAAAACTGCACCGGGCCTTCATAATATCATCCTTTCCCAAAAAGTTCGAAGTTGTTCTATAGAGTATTTCGATTTTTCAGCAAATATGACGTTTGCCATCTCTGACACTTTAGCATAGATAAGGTGATCATATTCTGAATAATTGATGTCGGTAAGAAATCCGCTGAAACGGATAACATTAGTCATGATCTTTGAAAGTTTTTTTGCCCTTCTCGAAATTTGAATCTTGTGGAGTTTGACATTTTCTTTTTCATATATTTTTCAACAAGCTTGTAAATGTATGAAATCTGATCCAAACTACTAGATCATTCAGCAACAACAGATCATTGTATGGAATTTCGGATTTTTGTTAGTTTCATAGAATATTCAATTTGGTCCAAGGAAGATACAGAACATTGAAAGATAGCGAGTAAAATTAACGCATATTCCGAACACTCATTGTCTATAGTATTCCCAACTTCGAGTTTTTTTTCTAGAATTTCCGCATTTCAAAAAACCTAGATGACATCATTTAAACTTTTCGAAACGAATTTATTCCTTCTGGAACATTTATATCTCATTTACTCTTCGTTGTGCTTCATCCAATTCTCCATACTCCTCCTCCCACACATGTGACAATAGATCATCGCGAATCTCTCAAATTTATTGAGGGAAGAAAAACGGAGAATAAGAAAAGAGACATGTCTCGTCGTCCCGGTTTCTTTTTGAATGTGTGTGTGTGTGCAAAAATGATAACAAGAGAGCAAAAGAAGAAGGAGAAGAAGAGCAGCTGTCCGGATCACAGGTCCGAGTAGAAAAACGAAAGTGTTGGGTGAATGAATAGAACGTAGGAATAAGAGAGTCAGACATTGGAAAGGTCGGGCGAGCTCCCGG</canonical>
            <polymorphic>TGAAAAACGATGTTTCGGTTCAAAAGGCAGAGACCTGAAAGGTGAGTTTTTTGAGACTTTGAATTTTACTAACGGTGTTAATTTGTGGAGGTTAAGAAAAATGAAATACCAGATTCTACAATATTCAAAAAACTGCACCGGGCCTTCATAATATCATCCTTTCCCAAAAAGTTCGAAGTTGTTCTATAGAGTATTTCGATTTTTCAGCAAATATGACGTTTGCCATCTCTGACACTTTAGCATAGATAAGGTGATCATATTCTGAATAATTGATGTCGGTAAGAAATCCGCTGAAACGGATAACATTAGTCATGATCTTTGAAAGTTTTTTTGCCCTTCTCGAAATTTGAATCTTGTGGAGTTTGACATTTTCTTTTTCATATATTTTTCAACAAGCTTGTAAATGTATGAAATCTGATCCAAACTACTAGATCATTCAGCAACAACAGATCATTGTATGGAATTTCGGATTTTTGTTAGTTTCATAGAATATTCAATTYGGTCCAAGGAAGATACAGAACATTGAAAGATAGCGAGTAAAATTAACGCATATTCCGAACACTCATTGTCTATAGTATTCCCAACTTCGAGTTTTTTTTCTAGAATTTCCGCATTTCAAAAAACCTAGATGACATCATTTAAACTTTTCGAAACGAATTTATTCCTTCTGGAACATTTATATCTCATTTACTCTTCGTTGTGCTTCATCCAATTCTCCATACTCCTCCTCCCACACATGTGACAATAGATCATCGCGAATCTCTCAAATTTATTGAGGGAAGAAAAACGGAGAATAAGAAAAGAGACATGTCTCGTCGTCCCGGTTTCTTTTTGAATGTGTGTGTGTGTGCAAAAATGATAACAAGAGAGCAAAAGAAGAAGGAGAAGAAGAGCAGCTGTCCGGATCACAGGTCCGAGTAGAAAAACGAAAGTGTTGGGTGAATGAATAGAACGTAGGAATAAGAGAGTCAGACATTGGAAAGGTCGGGCGAGCTCCCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTGAATCTTGTGGAGTTTG</pcr_primer_p1>
		<pcr_primer_p2>CGAAGTTGGGAATACTATAGACA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATTTGAATCTTGTGGAGTTTGACATTTTCTTTTTCATATATTTTTCAACAAGCTTGTAAATGTATGAAATCTGATCCAAACTACTAGATCATTCAGCAACAACAGATCATTGTATGGAATTTCGGATTTTTGTTAGTTTCATAGAATATTCAATTTGGTCCAAGGAAGATACAGAACATTGAAAGATAGCGAGTAAAATTAACGCATATTCCGAACACTCATTGTCTATAGTATTCCCAACTTCG</canonical_amplicon>
		<polymorphic_amplicon>AATTTGAATCTTGTGGAGTTTGACATTTTCTTTTTCATATATTTTTCAACAAGCTTGTAAATGTATGAAATCTGATCCAAACTACTAGATCATTCAGCAACAACAGATCATTGTATGGAATTTCGGATTTTTGTTAGTTTCATAGAATATTCAATTYGGTCCAAGGAAGATACAGAACATTGAAAGATAGCGAGTAAAATTAACGCATATTCCGAACACTCATTGTCTATAGTATTCCCAACTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33805</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>27000</contig_pos>
        <strand>+</strand>
        <context>ATTCAATTYG[C/G]TCCAAGGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CATTGTATGGAATTTCGGATTTTTGTTAGTTTCATAGAATATTCAATTTG</left_flank>
        <right_flank>TCCAAGGAAGATACAGAACATTGAAAGATAGCGAGTAAAATTAACGCATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAACGATGTTTCGGTTCAAAAGGCAGAGACCTGAAAGGTGAGTTTTTTGAGACTTTGAATTTTACTAACGGTGTTAATTTGTGGAGGTTAAGAAAAATGAAATACCAGATTCTACAATATTCAAAAAACTGCACCGGGCCTTCATAATATCATCCTTTCCCAAAAAGTTCGAAGTTGTTCTATAGAGTATTTCGATTTTTCAGCAAATATGACGTTTGCCATCTCTGACACTTTAGCATAGATAAGGTGATCATATTCTGAATAATTGATGTCGGTAAGAAATCCGCTGAAACGGATAACATTAGTCATGATCTTTGAAAGTTTTTTTGCCCTTCTCGAAATTTGAATCTTGTGGAGTTTGACATTTTCTTTTTCATATATTTTTCAACAAGCTTGTAAATGTATGAAATCTGATCCAAACTACTAGATCATTCAGCAACAACAGATCATTGTATGGAATTTCGGATTTTTGTTAGTTTCATAGAATATTCAATTTGGTCCAAGGAAGATACAGAACATTGAAAGATAGCGAGTAAAATTAACGCATATTCCGAACACTCATTGTCTATAGTATTCCCAACTTCGAGTTTTTTTTCTAGAATTTCCGCATTTCAAAAAACCTAGATGACATCATTTAAACTTTTCGAAACGAATTTATTCCTTCTGGAACATTTATATCTCATTTACTCTTCGTTGTGCTTCATCCAATTCTCCATACTCCTCCTCCCACACATGTGACAATAGATCATCGCGAATCTCTCAAATTTATTGAGGGAAGAAAAACGGAGAATAAGAAAAGAGACATGTCTCGTCGTCCCGGTTTCTTTTTGAATGTGTGTGTGTGTGCAAAAATGATAACAAGAGAGCAAAAGAAGAAGGAGAAGAAGAGCAGCTGTCCGGATCACAGGTCCGAGTAGAAAAACGAAAGTGTTGGGTGAATGAATAGAACGTAGGAATAAGAGAGTCAGACATTGGAAAGGTCGGGCGAGCTCCCGGGA</canonical>
            <polymorphic>AAAAACGATGTTTCGGTTCAAAAGGCAGAGACCTGAAAGGTGAGTTTTTTGAGACTTTGAATTTTACTAACGGTGTTAATTTGTGGAGGTTAAGAAAAATGAAATACCAGATTCTACAATATTCAAAAAACTGCACCGGGCCTTCATAATATCATCCTTTCCCAAAAAGTTCGAAGTTGTTCTATAGAGTATTTCGATTTTTCAGCAAATATGACGTTTGCCATCTCTGACACTTTAGCATAGATAAGGTGATCATATTCTGAATAATTGATGTCGGTAAGAAATCCGCTGAAACGGATAACATTAGTCATGATCTTTGAAAGTTTTTTTGCCCTTCTCGAAATTTGAATCTTGTGGAGTTTGACATTTTCTTTTTCATATATTTTTCAACAAGCTTGTAAATGTATGAAATCTGATCCAAACTACTAGATCATTCAGCAACAACAGATCATTGTATGGAATTTCGGATTTTTGTTAGTTTCATAGAATATTCAATTTGSTCCAAGGAAGATACAGAACATTGAAAGATAGCGAGTAAAATTAACGCATATTCCGAACACTCATTGTCTATAGTATTCCCAACTTCGAGTTTTTTTTCTAGAATTTCCGCATTTCAAAAAACCTAGATGACATCATTTAAACTTTTCGAAACGAATTTATTCCTTCTGGAACATTTATATCTCATTTACTCTTCGTTGTGCTTCATCCAATTCTCCATACTCCTCCTCCCACACATGTGACAATAGATCATCGCGAATCTCTCAAATTTATTGAGGGAAGAAAAACGGAGAATAAGAAAAGAGACATGTCTCGTCGTCCCGGTTTCTTTTTGAATGTGTGTGTGTGTGCAAAAATGATAACAAGAGAGCAAAAGAAGAAGGAGAAGAAGAGCAGCTGTCCGGATCACAGGTCCGAGTAGAAAAACGAAAGTGTTGGGTGAATGAATAGAACGTAGGAATAAGAGAGTCAGACATTGGAAAGGTCGGGCGAGCTCCCGGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>499 410 91</canonical_bands>
                <polymorphic_bands>909 91</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>410 361 138 91</canonical_bands>
                <polymorphic_bands>771 138 91</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTGAATCTTGTGGAGTTTG</pcr_primer_p1>
		<pcr_primer_p2>CGAAGTTGGGAATACTATAGACA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATTTGAATCTTGTGGAGTTTGACATTTTCTTTTTCATATATTTTTCAACAAGCTTGTAAATGTATGAAATCTGATCCAAACTACTAGATCATTCAGCAACAACAGATCATTGTATGGAATTTCGGATTTTTGTTAGTTTCATAGAATATTCAATTTGGTCCAAGGAAGATACAGAACATTGAAAGATAGCGAGTAAAATTAACGCATATTCCGAACACTCATTGTCTATAGTATTCCCAACTTCG</canonical_amplicon>
		<polymorphic_amplicon>AATTTGAATCTTGTGGAGTTTGACATTTTCTTTTTCATATATTTTTCAACAAGCTTGTAAATGTATGAAATCTGATCCAAACTACTAGATCATTCAGCAACAACAGATCATTGTATGGAATTTCGGATTTTTGTTAGTTTCATAGAATATTCAATTTGSTCCAAGGAAGATACAGAACATTGAAAGATAGCGAGTAAAATTAACGCATATTCCGAACACTCATTGTCTATAGTATTCCCAACTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33806</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>28594</contig_pos>
        <strand>+</strand>
        <context>YATAAGTTTT[G/T]MAAATTAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTT</left_flank>
        <right_flank>CAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTGGAAGTGGGCACAGTCATTGACTAGGTAAACTTATGTTAAAATTGTTCACTTGAAAGTCATACATATTAATATATCAAACTCAATGTTTTAGACAGTCAATTAGGTTTCTAAACACTGCCAGGCACCGCGAGAACCGAAGTATAAAGCGTGTTGCGAAAGTTTGACGTTGAATGGCTCACTCAAAAGTATTCTAGAGATTTTTGTTTTCGAACATTCCGAGTTTCTGAAAGAAAAACACCTATTTTGGCACGGACCCCTTTCTAAATGTATGACATTTAGAAAATCTGAAAATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTATCTAAAGTACACCCCTCATTAAAAATAGTTTCACCTTGATTGGAGTTTCTCCATTCTTATCAAAGACAAAAAAACCAGTATTTATTAAACTAGTAGACAGTCTGATTTATCCGTTAAAACCCTAGATAAATAAAATCAAAGTATGGCTACATAAAGTCTGGTTTACGGTTCTTTTGTATATTAGAGAAAAAAACTAGTCAATTGAGTTCATCACACCCGG</canonical>
            <polymorphic>GAGTGGAAGTGGGCACAGTCATTGACTAGGTAAACTTATGTTAAAATTGTTCACTTGAAAGTCATACATATTAATATATCAAACTCAATGTTTTAGACAGTCAATTAGGTTTCTAAACACTGCCAGGCACCGCGAGAACCGAAGTATAAAGCGTGTTGCGAAAGTTTGACGTTGAATGGCTCACTCAAAAGTATTCTAGAGATTTTTGTTTTCGAACATTCCGAGTTTCTGAAAGAAAAACACCTATTTTGGCACGGACCCCTTTCTAAATGTATGACATTTAGAAAATCTGAAAATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTKCAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTATCTAAAGTACACCCCTCATTAAAAATAGTTTCACCTTGATTGGAGTTTCTCCATTCTTATCAAAGACAAAAAAACCAGTATTTATTAAACTAGTAGACAGTCTGATTTATCCGTTAAAACCCTAGATAAATAAAATCAAAGTATGGCTACATAAAGTCTGGTTTACGGTTCTTTTGTATATTAGAGAAAAAAACTAGTCAATTGAGTTCATCACACCCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAGATATTTGATGGTGGAGT</pcr_primer_p1>
		<pcr_primer_p2>CATTTTTGTACCTGATGTGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>ATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATG</canonical_amplicon>
		<polymorphic_amplicon>ATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTKCAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33807</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>28707</contig_pos>
        <strand>+</strand>
        <context>CTTTTTTTGR[A/G]TTGTTTAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGA</left_flank>
        <right_flank>TTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAACACTGCCAGGCACCGCGAGAACCGAAGTATAAAGCGTGTTGCGAAAGTTTGACGTTGAATGGCTCACTCAAAAGTATTCTAGAGATTTTTGTTTTCGAACATTCCGAGTTTCTGAAAGAAAAACACCTATTTTGGCACGGACCCCTTTCTAAATGTATGACATTTAGAAAATCTGAAAATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTATCTAAAGTACACCCCTCATTAAAAATAGTTTCACCTTGATTGGAGTTTCTCCATTCTTATCAAAGACAAAAAAACCAGTATTTATTAAACTAGTAGACAGTCTGATTTATCCGTTAAAACCCTAGATAAATAAAATCAAAGTATGGCTACATAAAGTCTGGTTTACGGTTCTTTTGTATATTAGAGAAAAAAACTAGTCAATTGAGTTCATCACACCCGGGTAGGCCTAGGATTATGAACCCCTCCAAGTTGATACTTGCTCAACTTATGGGTTCTTTCATTTCTCTGCTGATAGTTTGGCACGCACGAAACGCGATATGATGACGTAATTTG</canonical>
            <polymorphic>TAAACACTGCCAGGCACCGCGAGAACCGAAGTATAAAGCGTGTTGCGAAAGTTTGACGTTGAATGGCTCACTCAAAAGTATTCTAGAGATTTTTGTTTTCGAACATTCCGAGTTTCTGAAAGAAAAACACCTATTTTGGCACGGACCCCTTTCTAAATGTATGACATTTAGAAAATCTGAAAATACACGAGCCAAAGAGTAAACAAATTATACTCACTCGATTTCCGTTTCACTCAATTCATTCAAATGCCTTACTAGAACTTTTCCTTTCAATTTTTTTTTGACTCTGAAAATTTGAAAAAAGCTCACAATGAGATATTTGATGGTGGAGTTGGAAAGTCGCAAAAGTTACCGGTAGGTTCTATAGCAGTAATTGTATAAGTTTTACAAATTAAAAAACAAAATCTATGAGGTTGTGAGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGARTTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTATCTAAAGTACACCCCTCATTAAAAATAGTTTCACCTTGATTGGAGTTTCTCCATTCTTATCAAAGACAAAAAAACCAGTATTTATTAAACTAGTAGACAGTCTGATTTATCCGTTAAAACCCTAGATAAATAAAATCAAAGTATGGCTACATAAAGTCTGGTTTACGGTTCTTTTGTATATTAGAGAAAAAAACTAGTCAATTGAGTTCATCACACCCGGGTAGGCCTAGGATTATGAACCCCTCCAAGTTGATACTTGCTCAACTTATGGGTTCTTTCATTTCTCTGCTGATAGTTTGGCACGCACGAAACGCGATATGATGACGTAATTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>238 205 128 90 80 54 36 32 30 23 22 20 18 10 8 6</canonical_bands>
                <polymorphic_bands>238 205 128 90 80 54 40 36 30 23 22 20 18 10 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGAAACCTGATATTTACAGCTC</pcr_primer_p1>
		<pcr_primer_p2>ATAATCAACAAAACTGAAACAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGAATTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTAT</canonical_amplicon>
		<polymorphic_amplicon>AGAGAAACCTGATATTTACAGCTCGAATTTATTCATTAGATGTTCTGAAATTTTTAAACTGGACATTACATCTTTTTTTGARTTGTTTAATTTTTGAAAATTCTCTTTCAGAACACATCAGGTACAAAAATGCCGTTGTGCATTCAGCAAGTCCAAAAGTACCATTGTGTAATACATTCATATTTTCAAATTCAAAAGCTGAAACCTGAGAATTTTCGGAATCGTCGCCTGTTTCAGTTTTGTTGATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33808</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>117404</contig_pos>
        <strand>+</strand>
        <context>ATCCTGGACT[G/T]TTTCTTTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGCCGAAGAGCTGTCCATTGAGCTCCGGTCCATCGAGCTCATCCTGGACT</left_flank>
        <right_flank>TTTCTTTCCACTTTCTCCTCCCGATCCTTGTTCATTTCATTTCTCGGCAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTTTTTTTTCATATTTGACGATCCATTATACTAGGTGTAGAATATCTGCAGTTCAAAATACTTTGAGCAGATGCTGAAAATTGGGAAAAGCCACCATGTTATATTGATCCCATGATAGACCTCATAATTATATTGATCCAATCAGTCAAACTCTTCAAATATGAGGGCCTACTTTCTAAGATAAAAAACAACGATAATGGCTGTGCTCTATTATCATTGTCTTCCCTTTTCTTCATCAATTCACTTTTTCTCCTGACTCATAATTTTTTTTGCCATTATTTTTGTTTTCCCTGTGAGATGCGTCCCTTTTCTTCTTTCTATGGTTGTACAATGTCTTCTAATTTTCGTGGGAAATTTTCCTCAATTAGCAGATTTGTGGGATGTTGCGCCTTCCACAAAACAGTACATGTCCATGGATTCATCTACCCCTTGCTATTCGACAGCGATGCCGAAGAGCTGTCCATTGAGCTCCGGTCCATCGAGCTCATCCTGGACTTTTTCTTTCCACTTTCTCCTCCCGATCCTTGTTCATTTCATTTCTCGGCATCATCCGTTTGGCACCTTTCTATTTTTCTCGAAACCTCCCCACCTCCAACGTTCCATCTACCCGGCGCTTCCTCTCCGAGATCTATTTATGACCGTCTCCAATTAGCTGTCAAAATTTTTTTCGGCTCAGAAGCGAGATGGTGCCTAACCTTTTTGTGTGTTTTTCGATATATTGGTGTTTGTCGAGATGGGGAGGATGGAGATGGAAGATCTGATCCGGTGATATCCAGACAACACTTGGAGGTCTTGCCATTCTAGTTTCATTTTCAAAAACGCTTGCTTTTCTGACTTTTATGGGATTGTCGTGTATTTTTTTTTCTAAAAATACCTTGCTCTGGCCTTCTGACCTACTTGTTATGAGTTGCTTTCTTTTGTATTGGGAATTTTTTCGCTCAGAAATTTCGAACCATTGATCAGAAACCCTTATCTTCTTGCGTGGGGGTTCCTCTTC</canonical>
            <polymorphic>GAATTTTTTTTTCATATTTGACGATCCATTATACTAGGTGTAGAATATCTGCAGTTCAAAATACTTTGAGCAGATGCTGAAAATTGGGAAAAGCCACCATGTTATATTGATCCCATGATAGACCTCATAATTATATTGATCCAATCAGTCAAACTCTTCAAATATGAGGGCCTACTTTCTAAGATAAAAAACAACGATAATGGCTGTGCTCTATTATCATTGTCTTCCCTTTTCTTCATCAATTCACTTTTTCTCCTGACTCATAATTTTTTTTGCCATTATTTTTGTTTTCCCTGTGAGATGCGTCCCTTTTCTTCTTTCTATGGTTGTACAATGTCTTCTAATTTTCGTGGGAAATTTTCCTCAATTAGCAGATTTGTGGGATGTTGCGCCTTCCACAAAACAGTACATGTCCATGGATTCATCTACCCCTTGCTATTCGACAGCGATGCCGAAGAGCTGTCCATTGAGCTCCGGTCCATCGAGCTCATCCTGGACTKTTTCTTTCCACTTTCTCCTCCCGATCCTTGTTCATTTCATTTCTCGGCATCATCCGTTTGGCACCTTTCTATTTTTCTCGAAACCTCCCCACCTCCAACGTTCCATCTACCCGGCGCTTCCTCTCCGAGATCTATTTATGACCGTCTCCAATTAGCTGTCAAAATTTTTTTCGGCTCAGAAGCGAGATGGTGCCTAACCTTTTTGTGTGTTTTTCGATATATTGGTGTTTGTCGAGATGGGGAGGATGGAGATGGAAGATCTGATCCGGTGATATCCAGACAACACTTGGAGGTCTTGCCATTCTAGTTTCATTTTCAAAAACGCTTGCTTTTCTGACTTTTATGGGATTGTCGTGTATTTTTTTTTCTAAAAATACCTTGCTCTGGCCTTCTGACCTACTTGTTATGAGTTGCTTTCTTTTGTATTGGGAATTTTTTCGCTCAGAAATTTCGAACCATTGATCAGAAACCCTTATCTTCTTGCGTGGGGGTTCCTCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACATGTCCATGGATTCATCT</pcr_primer_p1>
		<pcr_primer_p2>CTAATTGGAGACGGTCATAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTACATGTCCATGGATTCATCTACCCCTTGCTATTCGACAGCGATGCCGAAGAGCTGTCCATTGAGCTCCGGTCCATCGAGCTCATCCTGGACTTTTTCTTTCCACTTTCTCCTCCCGATCCTTGTTCATTTCATTTCTCGGCATCATCCGTTTGGCACCTTTCTATTTTTCTCGAAACCTCCCCACCTCCAACGTTCCATCTACCCGGCGCTTCCTCTCCGAGATCTATTTATGACCGTCTCCAATTAG</canonical_amplicon>
		<polymorphic_amplicon>GTACATGTCCATGGATTCATCTACCCCTTGCTATTCGACAGCGATGCCGAAGAGCTGTCCATTGAGCTCCGGTCCATCGAGCTCATCCTGGACTKTTTCTTTCCACTTTCTCCTCCCGATCCTTGTTCATTTCATTTCTCGGCATCATCCGTTTGGCACCTTTCTATTTTTCTCGAAACCTCCCCACCTCCAACGTTCCATCTACCCGGCGCTTCCTCTCCGAGATCTATTTATGACCGTCTCCAATTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33809</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>117849</contig_pos>
        <strand>+</strand>
        <context>TTTTCGCTCA[A/G]AAATTTCGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCTACTTGTTATGAGTTGCTTTCTTTTGTATTGGGAATTTTTTCGCTCA</left_flank>
        <right_flank>AAATTTCGAACCATTGATCAGAAACCCTTATCTTCTTGCGTGGGGGTTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGATGCCGAAGAGCTGTCCATTGAGCTCCGGTCCATCGAGCTCATCCTGGACTTTTTCTTTCCACTTTCTCCTCCCGATCCTTGTTCATTTCATTTCTCGGCATCATCCGTTTGGCACCTTTCTATTTTTCTCGAAACCTCCCCACCTCCAACGTTCCATCTACCCGGCGCTTCCTCTCCGAGATCTATTTATGACCGTCTCCAATTAGCTGTCAAAATTTTTTTCGGCTCAGAAGCGAGATGGTGCCTAACCTTTTTGTGTGTTTTTCGATATATTGGTGTTTGTCGAGATGGGGAGGATGGAGATGGAAGATCTGATCCGGTGATATCCAGACAACACTTGGAGGTCTTGCCATTCTAGTTTCATTTTCAAAAACGCTTGCTTTTCTGACTTTTATGGGATTGTCGTGTATTTTTTTTTCTAAAAATACCTTGCTCTGGCCTTCTGACCTACTTGTTATGAGTTGCTTTCTTTTGTATTGGGAATTTTTTCGCTCAGAAATTTCGAACCATTGATCAGAAACCCTTATCTTCTTGCGTGGGGGTTCCTCTTCTCGCCTTATTTGCCCTTTTCCCCTTTACCTCCTGATTCTTGATTCTTGACTCTCGCCTCTAATTCCACTTAAAACATGCATGTGCCCAAAGAATTATTTTTCAAGTATATCGGGAGATGCAGCAAAGTCAATATCACTGTCAATATCACTTCTCTAACTTCTTCTTCTTCTTTGCCCCCATTTCTGTGATGAAGACTCCAATTCACACTAAATAAGGAGGGGAGAAGGAAGACTGAGGTAATAGAATAAGAATCATATTCATCGCTACAATTTTTGTGTGATTTGGGGGACTCATCGCGATGCATTCCTCAGAAATATTTTTGAATAGAAAAAGAGAGATTTATGAATTTTATTTGAAAACAAAGTCAGATAAGTGATGTAAGGTGTTGTTATCAATGCTGGGAATATTTAAGTTTGACATGATTTTCATTGCTACTTGGCCTGG</canonical>
            <polymorphic>GCGATGCCGAAGAGCTGTCCATTGAGCTCCGGTCCATCGAGCTCATCCTGGACTTTTTCTTTCCACTTTCTCCTCCCGATCCTTGTTCATTTCATTTCTCGGCATCATCCGTTTGGCACCTTTCTATTTTTCTCGAAACCTCCCCACCTCCAACGTTCCATCTACCCGGCGCTTCCTCTCCGAGATCTATTTATGACCGTCTCCAATTAGCTGTCAAAATTTTTTTCGGCTCAGAAGCGAGATGGTGCCTAACCTTTTTGTGTGTTTTTCGATATATTGGTGTTTGTCGAGATGGGGAGGATGGAGATGGAAGATCTGATCCGGTGATATCCAGACAACACTTGGAGGTCTTGCCATTCTAGTTTCATTTTCAAAAACGCTTGCTTTTCTGACTTTTATGGGATTGTCGTGTATTTTTTTTTCTAAAAATACCTTGCTCTGGCCTTCTGACCTACTTGTTATGAGTTGCTTTCTTTTGTATTGGGAATTTTTTCGCTCARAAATTTCGAACCATTGATCAGAAACCCTTATCTTCTTGCGTGGGGGTTCCTCTTCTCGCCTTATTTGCCCTTTTCCCCTTTACCTCCTGATTCTTGATTCTTGACTCTCGCCTCTAATTCCACTTAAAACATGCATGTGCCCAAAGAATTATTTTTCAAGTATATCGGGAGATGCAGCAAAGTCAATATCACTGTCAATATCACTTCTCTAACTTCTTCTTCTTCTTTGCCCCCATTTCTGTGATGAAGACTCCAATTCACACTAAATAAGGAGGGGAGAAGGAAGACTGAGGTAATAGAATAAGAATCATATTCATCGCTACAATTTTTGTGTGATTTGGGGGACTCATCGCGATGCATTCCTCAGAAATATTTTTGAATAGAAAAAGAGAGATTTATGAATTTTATTTGAAAACAAAGTCAGATAAGTGATGTAAGGTGTTGTTATCAATGCTGGGAATATTTAAGTTTGACATGATTTTCATTGCTACTTGGCCTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>292 266 230 137 75</canonical_bands>
                <polymorphic_bands>558 230 137 75</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>346 181 84 77 73 58 57 52 51 21</canonical_bands>
                <polymorphic_bands>346 181 84 77 73 72 58 57 52</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTGACTTTTATGGGATTGTC</pcr_primer_p1>
		<pcr_primer_p2>ATGCATGTTTTAAGTGGAATTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTGACTTTTATGGGATTGTCGTGTATTTTTTTTTCTAAAAATACCTTGCTCTGGCCTTCTGACCTACTTGTTATGAGTTGCTTTCTTTTGTATTGGGAATTTTTTCGCTCAGAAATTTCGAACCATTGATCAGAAACCCTTATCTTCTTGCGTGGGGGTTCCTCTTCTCGCCTTATTTGCCCTTTTCCCCTTTACCTCCTGATTCTTGATTCTTGACTCTCGCCTCTAATTCCACTTAAAACATGCAT</canonical_amplicon>
		<polymorphic_amplicon>TTCTGACTTTTATGGGATTGTCGTGTATTTTTTTTTCTAAAAATACCTTGCTCTGGCCTTCTGACCTACTTGTTATGAGTTGCTTTCTTTTGTATTGGGAATTTTTTCGCTCARAAATTTCGAACCATTGATCAGAAACCCTTATCTTCTTGCGTGGGGGTTCCTCTTCTCGCCTTATTTGCCCTTTTCCCCTTTACCTCCTGATTCTTGATTCTTGACTCTCGCCTCTAATTCCACTTAAAACATGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33810</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>119968</contig_pos>
        <strand></strand>
        <context>taaaatgttg[C/T]tgatatcatg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCCTTTTTTGTGAGAGATATCAAAAAGTGGTTAACTTATAAAATGTTG</left_flank>
        <right_flank>TGATATCATGATAAACATTTTATTTGTTGACAACTTTTTGATACCTTTCA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGACGTCTTCTAGGTGTGGAGATTGGGACAAATCGTCGTCGCTTCTGAATGCTGTCAAGTGTGAAAGAGAGAGTCACTTTTCGATGGGGCAGGTAAAAGTCGTAAATAGTGACATTTGATGCGGCACAGGTTCTTTTTTTTCTAGAAAAAGTGAACAAAGGGAGCAAGAGTCTTAAATTTTGCGGTTTAACCGTCGTTGTTCACTTTTTCTTAAAATTTATTTTTTTTCTGGATTTTTTTTCTACTTTTGTTCATATTTCTATTAAGAACTGAGATAATTATGGCCGAGTTATTCTCGGATTTGATTTTCTAGATAGAAAATTGATTAATTTTTTATTTTCCCATTACTTTTTAGTACCCTCTTTTTTCTGGAAATCTAGTCCACTTCTAAATTACCGTAAACACTCTACTAGAACGCCACCCGATTTGTCAAATTTGAGCCCATGTATCTCCTTTTTTGTGAGAGATATCAAAAAGTGGTTAACTTATAAAATGTTGCTGATATCATGATAAACATTTTATTTGTTGACAACTTTTTGATACCTTTCAAAACATTTAAGATATATAGGTTCAAAGTAGATGGTCCGGGTGGCGTTCTATTAGAGTGTTTACAGTATCTTCGGTTTGTTCCAGCTTTCTTCAAACTTCTGAAGTCCTCCCACTACATATTTCATTCATACATTTCCACCCGAAATTCCTATTAATTTCGAAATCAAAAGAAGACTCATCATTTGCTTTGATAAAAACTAAAAAGTGTCAATTTGAAAAATGTATGACCAAAAAAGGGAAAAAAGTTCCATGTCCTTGTTTGTTATCAGTTCTTCTTCATTCTAACTTTGCCCATCATGTGCCAAATGATGAGCACAGGAACTTCACATTTTCTTTCCTACAATTTTTTTCGGAGAGATTCTTCTTACTTCTGGTCCAAACTTTTGAACCAAATCCCCGTACCTTCCCATCCCTAAAAATCTAAACTGAGCAACCAATTTTCTTGAAAAG</canonical>
            <polymorphic>ACGACGTCTTCTAGGTGTGGAGATTGGGACAAATCGTCGTCGCTTCTGAATGCTGTCAAGTGTGAAAGAGAGAGTCACTTTTCGATGGGGCAGGTAAAAGTCGTAAATAGTGACATTTGATGCGGCACAGGTTCTTTTTTTTCTAGAAAAAGTGAACAAAGGGAGCAAGAGTCTTAAATTTTGCGGTTTAACCGTCGTTGTTCACTTTTTCTTAAAATTTATTTTTTTTCTGGATTTTTTTTCTACTTTTGTTCATATTTCTATTAAGAACTGAGATAATTATGGCCGAGTTATTCTCGGATTTGATTTTCTAGATAGAAAATTGATTAATTTTTTATTTTCCCATTACTTTTTAGTACCCTCTTTTTTCTGGAAATCTAGTCCACTTCTAAATTACCGTAAACACTCTACTAGAACGCCACCCGATTTGTCAAATTTGAGCCCATGTATCTCCTTTTTTGTGAGAGATATCAAAAAGTGGTTAACTTATAAAATGTTGYTGATATCATGATAAACATTTTATTTGTTGACAACTTTTTGATACCTTTCAAAACATTTAAGATATATAGGTTCAAAGTAGATGGTCCGGGTGGCGTTCTATTAGAGTGTTTACAGTATCTTCGGTTTGTTCCAGCTTTCTTCAAACTTCTGAAGTCCTCCCACTACATATTTCATTCATACATTTCCACCCGAAATTCCTATTAATTTCGAAATCAAAAGAAGACTCATCATTTGCTTTGATAAAAACTAAAAAGTGTCAATTTGAAAAATGTATGACCAAAAAAGGGAAAAAAGTTCCATGTCCTTGTTTGTTATCAGTTCTTCTTCATTCTAACTTTGCCCATCATGTGCCAAATGATGAGCACAGGAACTTCACATTTTCTTTCCTACAATTTTTTTCGGAGAGATTCTTCTTACTTCTGGTCCAAACTTTTGAACCAAATCCCCGTACCTTCCCATCCCTAAAAATCTAAACTGAGCAACCAATTTTCTTGAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAAATCTAGTCCACTTCTAAA</pcr_primer_p1>
		<pcr_primer_p2>TGAAGAAAGCTGGAACAAAC</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>TGGAAATCTAGTCCACTTCTAAATTACCGTAAACACTCTACTAGAACGCCACCCGATTTGTCAAATTTGAGCCCATGTATCTCCTTTTTTGTGAGAGATATCAAAAAGTGGTTAACTTATAAAATGTTGCTGATATCATGATAAACATTTTATTTGTTGACAACTTTTTGATACCTTTCAAAACATTTAAGATATATAGGTTCAAAGTAGATGGTCCGGGTGGCGTTCTATTAGAGTGTTTACAGTATCTTCGGTTTGTTCCAGCTTTCTTCA</canonical_amplicon>
		<polymorphic_amplicon>TGGAAATCTAGTCCACTTCTAAATTACCGTAAACACTCTACTAGAACGCCACCCGATTTGTCAAATTTGAGCCCATGTATCTCCTTTTTTGTGAGAGATATCAAAAAGTGGTTAACTTATAAAATGTTGYTGATATCATGATAAACATTTTATTTGTTGACAACTTTTTGATACCTTTCAAAACATTTAAGATATATAGGTTCAAAGTAGATGGTCCGGGTGGCGTTCTATTAGAGTGTTTACAGTATCTTCGGTTTGTTCCAGCTTTCTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33811</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>120025</contig_pos>
        <strand></strand>
        <context>ttcaaaacat[T/G]taagatatat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CATGATAAACATTTTATTTGTTGACAACTTTTTGATACCTTTCAAAACAT</left_flank>
        <right_flank>TAAGATATATAGGTTCAAAGTAGATGGTCCGGGTGGCGTTCTATTAGAGT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTGTGAAAGAGAGAGTCACTTTTCGATGGGGCAGGTAAAAGTCGTAAATAGTGACATTTGATGCGGCACAGGTTCTTTTTTTTCTAGAAAAAGTGAACAAAGGGAGCAAGAGTCTTAAATTTTGCGGTTTAACCGTCGTTGTTCACTTTTTCTTAAAATTTATTTTTTTTCTGGATTTTTTTTCTACTTTTGTTCATATTTCTATTAAGAACTGAGATAATTATGGCCGAGTTATTCTCGGATTTGATTTTCTAGATAGAAAATTGATTAATTTTTTATTTTCCCATTACTTTTTAGTACCCTCTTTTTTCTGGAAATCTAGTCCACTTCTAAATTACCGTAAACACTCTACTAGAACGCCACCCGATTTGTCAAATTTGAGCCCATGTATCTCCTTTTTTGTGAGAGATATCAAAAAGTGGTTAACTTATAAAATGTTGCTGATATCATGATAAACATTTTATTTGTTGACAACTTTTTGATACCTTTCAAAACATTTAAGATATATAGGTTCAAAGTAGATGGTCCGGGTGGCGTTCTATTAGAGTGTTTACAGTATCTTCGGTTTGTTCCAGCTTTCTTCAAACTTCTGAAGTCCTCCCACTACATATTTCATTCATACATTTCCACCCGAAATTCCTATTAATTTCGAAATCAAAAGAAGACTCATCATTTGCTTTGATAAAAACTAAAAAGTGTCAATTTGAAAAATGTATGACCAAAAAAGGGAAAAAAGTTCCATGTCCTTGTTTGTTATCAGTTCTTCTTCATTCTAACTTTGCCCATCATGTGCCAAATGATGAGCACAGGAACTTCACATTTTCTTTCCTACAATTTTTTTCGGAGAGATTCTTCTTACTTCTGGTCCAAACTTTTGAACCAAATCCCCGTACCTTCCCATCCCTAAAAATCTAAACTGAGCAACCAATTTTCTTGAAAAGACGATTCTGCTGTGCTCGTCGGATGCTGCCCATTTTCTTCTTCATCTTTTGAGAATA</canonical>
            <polymorphic>AAGTGTGAAAGAGAGAGTCACTTTTCGATGGGGCAGGTAAAAGTCGTAAATAGTGACATTTGATGCGGCACAGGTTCTTTTTTTTCTAGAAAAAGTGAACAAAGGGAGCAAGAGTCTTAAATTTTGCGGTTTAACCGTCGTTGTTCACTTTTTCTTAAAATTTATTTTTTTTCTGGATTTTTTTTCTACTTTTGTTCATATTTCTATTAAGAACTGAGATAATTATGGCCGAGTTATTCTCGGATTTGATTTTCTAGATAGAAAATTGATTAATTTTTTATTTTCCCATTACTTTTTAGTACCCTCTTTTTTCTGGAAATCTAGTCCACTTCTAAATTACCGTAAACACTCTACTAGAACGCCACCCGATTTGTCAAATTTGAGCCCATGTATCTCCTTTTTTGTGAGAGATATCAAAAAGTGGTTAACTTATAAAATGTTGCTGATATCATGATAAACATTTTATTTGTTGACAACTTTTTGATACCTTTCAAAACATKTAAGATATATAGGTTCAAAGTAGATGGTCCGGGTGGCGTTCTATTAGAGTGTTTACAGTATCTTCGGTTTGTTCCAGCTTTCTTCAAACTTCTGAAGTCCTCCCACTACATATTTCATTCATACATTTCCACCCGAAATTCCTATTAATTTCGAAATCAAAAGAAGACTCATCATTTGCTTTGATAAAAACTAAAAAGTGTCAATTTGAAAAATGTATGACCAAAAAAGGGAAAAAAGTTCCATGTCCTTGTTTGTTATCAGTTCTTCTTCATTCTAACTTTGCCCATCATGTGCCAAATGATGAGCACAGGAACTTCACATTTTCTTTCCTACAATTTTTTTCGGAGAGATTCTTCTTACTTCTGGTCCAAACTTTTGAACCAAATCCCCGTACCTTCCCATCCCTAAAAATCTAAACTGAGCAACCAATTTTCTTGAAAAGACGATTCTGCTGTGCTCGTCGGATGCTGCCCATTTTCTTCTTCATCTTTTGAGAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>355 155 145 117 75 63 52 24 14</canonical_bands>
                <polymorphic_bands>355 220 155 117 63 52 24 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGAAATCTAGTCCACTTCTAAA</pcr_primer_p1>
		<pcr_primer_p2>TGAAGAAAGCTGGAACAAAC</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>TGGAAATCTAGTCCACTTCTAAATTACCGTAAACACTCTACTAGAACGCCACCCGATTTGTCAAATTTGAGCCCATGTATCTCCTTTTTTGTGAGAGATATCAAAAAGTGGTTAACTTATAAAATGTTGCTGATATCATGATAAACATTTTATTTGTTGACAACTTTTTGATACCTTTCAAAACATTTAAGATATATAGGTTCAAAGTAGATGGTCCGGGTGGCGTTCTATTAGAGTGTTTACAGTATCTTCGGTTTGTTCCAGCTTTCTTCA</canonical_amplicon>
		<polymorphic_amplicon>TGGAAATCTAGTCCACTTCTAAATTACCGTAAACACTCTACTAGAACGCCACCCGATTTGTCAAATTTGAGCCCATGTATCTCCTTTTTTGTGAGAGATATCAAAAAGTGGTTAACTTATAAAATGTTGCTGATATCATGATAAACATTTTATTTGTTGACAACTTTTTGATACCTTTCAAAACATKTAAGATATATAGGTTCAAAGTAGATGGTCCGGGTGGCGTTCTATTAGAGTGTTTACAGTATCTTCGGTTTGTTCCAGCTTTCTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33812</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>120082</contig_pos>
        <strand></strand>
        <context>gagtgtttac[A/G]gtATCTTCGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATAGGTTCAAAGTAGATGGTCCGGGTGGCGTTCTATTAGAGTGTTTAC</left_flank>
        <right_flank>GTATCTTCGGTTTGTTCCAGCTTTCTTCAAACTTCTGAAGTCCTCCCACT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGATGCGGCACAGGTTCTTTTTTTTCTAGAAAAAGTGAACAAAGGGAGCAAGAGTCTTAAATTTTGCGGTTTAACCGTCGTTGTTCACTTTTTCTTAAAATTTATTTTTTTTCTGGATTTTTTTTCTACTTTTGTTCATATTTCTATTAAGAACTGAGATAATTATGGCCGAGTTATTCTCGGATTTGATTTTCTAGATAGAAAATTGATTAATTTTTTATTTTCCCATTACTTTTTAGTACCCTCTTTTTTCTGGAAATCTAGTCCACTTCTAAATTACCGTAAACACTCTACTAGAACGCCACCCGATTTGTCAAATTTGAGCCCATGTATCTCCTTTTTTGTGAGAGATATCAAAAAGTGGTTAACTTATAAAATGTTGCTGATATCATGATAAACATTTTATTTGTTGACAACTTTTTGATACCTTTCAAAACATTTAAGATATATAGGTTCAAAGTAGATGGTCCGGGTGGCGTTCTATTAGAGTGTTTACAGTATCTTCGGTTTGTTCCAGCTTTCTTCAAACTTCTGAAGTCCTCCCACTACATATTTCATTCATACATTTCCACCCGAAATTCCTATTAATTTCGAAATCAAAAGAAGACTCATCATTTGCTTTGATAAAAACTAAAAAGTGTCAATTTGAAAAATGTATGACCAAAAAAGGGAAAAAAGTTCCATGTCCTTGTTTGTTATCAGTTCTTCTTCATTCTAACTTTGCCCATCATGTGCCAAATGATGAGCACAGGAACTTCACATTTTCTTTCCTACAATTTTTTTCGGAGAGATTCTTCTTACTTCTGGTCCAAACTTTTGAACCAAATCCCCGTACCTTCCCATCCCTAAAAATCTAAACTGAGCAACCAATTTTCTTGAAAAGACGATTCTGCTGTGCTCGTCGGATGCTGCCCATTTTCTTCTTCATCTTTTGAGAATAGAAGAAGACCTCACGAAGAATAAGATGAAGAAGCATAAGCAAGAAAAAAAGTAGGAG</canonical>
            <polymorphic>ATTTGATGCGGCACAGGTTCTTTTTTTTCTAGAAAAAGTGAACAAAGGGAGCAAGAGTCTTAAATTTTGCGGTTTAACCGTCGTTGTTCACTTTTTCTTAAAATTTATTTTTTTTCTGGATTTTTTTTCTACTTTTGTTCATATTTCTATTAAGAACTGAGATAATTATGGCCGAGTTATTCTCGGATTTGATTTTCTAGATAGAAAATTGATTAATTTTTTATTTTCCCATTACTTTTTAGTACCCTCTTTTTTCTGGAAATCTAGTCCACTTCTAAATTACCGTAAACACTCTACTAGAACGCCACCCGATTTGTCAAATTTGAGCCCATGTATCTCCTTTTTTGTGAGAGATATCAAAAAGTGGTTAACTTATAAAATGTTGCTGATATCATGATAAACATTTTATTTGTTGACAACTTTTTGATACCTTTCAAAACATTTAAGATATATAGGTTCAAAGTAGATGGTCCGGGTGGCGTTCTATTAGAGTGTTTACRGTATCTTCGGTTTGTTCCAGCTTTCTTCAAACTTCTGAAGTCCTCCCACTACATATTTCATTCATACATTTCCACCCGAAATTCCTATTAATTTCGAAATCAAAAGAAGACTCATCATTTGCTTTGATAAAAACTAAAAAGTGTCAATTTGAAAAATGTATGACCAAAAAAGGGAAAAAAGTTCCATGTCCTTGTTTGTTATCAGTTCTTCTTCATTCTAACTTTGCCCATCATGTGCCAAATGATGAGCACAGGAACTTCACATTTTCTTTCCTACAATTTTTTTCGGAGAGATTCTTCTTACTTCTGGTCCAAACTTTTGAACCAAATCCCCGTACCTTCCCATCCCTAAAAATCTAAACTGAGCAACCAATTTTCTTGAAAAGACGATTCTGCTGTGCTCGTCGGATGCTGCCCATTTTCTTCTTCATCTTTTGAGAATAGAAGAAGACCTCACGAAGAATAAGATGAAGAAGCATAAGCAAGAAAAAAAGTAGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAAATCTAGTCCACTTCTAAA</pcr_primer_p1>
		<pcr_primer_p2>ATATGTAGTGGGAGGACTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>TGGAAATCTAGTCCACTTCTAAATTACCGTAAACACTCTACTAGAACGCCACCCGATTTGTCAAATTTGAGCCCATGTATCTCCTTTTTTGTGAGAGATATCAAAAAGTGGTTAACTTATAAAATGTTGCTGATATCATGATAAACATTTTATTTGTTGACAACTTTTTGATACCTTTCAAAACATTTAAGATATATAGGTTCAAAGTAGATGGTCCGGGTGGCGTTCTATTAGAGTGTTTACAGTATCTTCGGTTTGTTCCAGCTTTCTTCAAACTTCTGAAGTCCTCCCACTACATAT</canonical_amplicon>
		<polymorphic_amplicon>TGGAAATCTAGTCCACTTCTAAATTACCGTAAACACTCTACTAGAACGCCACCCGATTTGTCAAATTTGAGCCCATGTATCTCCTTTTTTGTGAGAGATATCAAAAAGTGGTTAACTTATAAAATGTTGCTGATATCATGATAAACATTTTATTTGTTGACAACTTTTTGATACCTTTCAAAACATTTAAGATATATAGGTTCAAAGTAGATGGTCCGGGTGGCGTTCTATTAGAGTGTTTACRGTATCTTCGGTTTGTTCCAGCTTTCTTCAAACTTCTGAAGTCCTCCCACTACATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33813</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>120534</contig_pos>
        <strand>+</strand>
        <context>TAGAAGAAGA[C/T]CTCACGAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGTCGGATGCTGCCCATTTTCTTCTTCATCTTTTGAGAATAGAAGAAGA</left_flank>
        <right_flank>CTCACGAAGAATAAGATGAAGAAGCATAAGCAAGAAAAAAAGTAGGAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGTTCAAAGTAGATGGTCCGGGTGGCGTTCTATTAGAGTGTTTACAGTATCTTCGGTTTGTTCCAGCTTTCTTCAAACTTCTGAAGTCCTCCCACTACATATTTCATTCATACATTTCCACCCGAAATTCCTATTAATTTCGAAATCAAAAGAAGACTCATCATTTGCTTTGATAAAAACTAAAAAGTGTCAATTTGAAAAATGTATGACCAAAAAAGGGAAAAAAGTTCCATGTCCTTGTTTGTTATCAGTTCTTCTTCATTCTAACTTTGCCCATCATGTGCCAAATGATGAGCACAGGAACTTCACATTTTCTTTCCTACAATTTTTTTCGGAGAGATTCTTCTTACTTCTGGTCCAAACTTTTGAACCAAATCCCCGTACCTTCCCATCCCTAAAAATCTAAACTGAGCAACCAATTTTCTTGAAAAGACGATTCTGCTGTGCTCGTCGGATGCTGCCCATTTTCTTCTTCATCTTTTGAGAATAGAAGAAGACCTCACGAAGAATAAGATGAAGAAGCATAAGCAAGAAAAAAAGTAGGAGAGACAAAATCGCCGCTTCTTTTCTTCCCATTCTTTCCTTCCCATTCTTCCCTGCAGGTGAGGAGGGCACCTTTTATATCTAAAGAGTTTTGGGATGGAATAATAAAATGGTGGGCTCTTTTCGAAAAAAAAATTGGTAGGATGGGTGAAGAAAATGGGAAGAAGGAAAGTTGAGTAGAGGTTTTTTCCCGTTGTCATGGTGAAAGAGGTGGGAAAGCATAAGTGTTCGGAACATCCAGAAAAAAAATTAGACATGGAAAGTATCAACTAATTAGGAGATTCATTGTTTTGAACCATTTTATAAATAATGAAACTTGCAAAATGCTTAAATTTTGTCAGTTAACCAATATTCGGTTTTTTACAATTTCCGTAAACACTCTAATAGATGTTCACCCTATATTTCCACTTTCAGCTCAATTATCTCAATTTCTATAAGAGATAACAAAAATCTGT</canonical>
            <polymorphic>TAGGTTCAAAGTAGATGGTCCGGGTGGCGTTCTATTAGAGTGTTTACAGTATCTTCGGTTTGTTCCAGCTTTCTTCAAACTTCTGAAGTCCTCCCACTACATATTTCATTCATACATTTCCACCCGAAATTCCTATTAATTTCGAAATCAAAAGAAGACTCATCATTTGCTTTGATAAAAACTAAAAAGTGTCAATTTGAAAAATGTATGACCAAAAAAGGGAAAAAAGTTCCATGTCCTTGTTTGTTATCAGTTCTTCTTCATTCTAACTTTGCCCATCATGTGCCAAATGATGAGCACAGGAACTTCACATTTTCTTTCCTACAATTTTTTTCGGAGAGATTCTTCTTACTTCTGGTCCAAACTTTTGAACCAAATCCCCGTACCTTCCCATCCCTAAAAATCTAAACTGAGCAACCAATTTTCTTGAAAAGACGATTCTGCTGTGCTCGTCGGATGCTGCCCATTTTCTTCTTCATCTTTTGAGAATAGAAGAAGAYCTCACGAAGAATAAGATGAAGAAGCATAAGCAAGAAAAAAAGTAGGAGAGACAAAATCGCCGCTTCTTTTCTTCCCATTCTTTCCTTCCCATTCTTCCCTGCAGGTGAGGAGGGCACCTTTTATATCTAAAGAGTTTTGGGATGGAATAATAAAATGGTGGGCTCTTTTCGAAAAAAAAATTGGTAGGATGGGTGAAGAAAATGGGAAGAAGGAAAGTTGAGTAGAGGTTTTTTCCCGTTGTCATGGTGAAAGAGGTGGGAAAGCATAAGTGTTCGGAACATCCAGAAAAAAAATTAGACATGGAAAGTATCAACTAATTAGGAGATTCATTGTTTTGAACCATTTTATAAATAATGAAACTTGCAAAATGCTTAAATTTTGTCAGTTAACCAATATTCGGTTTTTTACAATTTCCGTAAACACTCTAATAGATGTTCACCCTATATTTCCACTTTCAGCTCAATTATCTCAATTTCTATAAGAGATAACAAAAATCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTAAACTGAGCAACCAATTTT</pcr_primer_p1>
		<pcr_primer_p2>TATTATTCCATCCCAAAACTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTAAACTGAGCAACCAATTTTCTTGAAAAGACGATTCTGCTGTGCTCGTCGGATGCTGCCCATTTTCTTCTTCATCTTTTGAGAATAGAAGAAGACCTCACGAAGAATAAGATGAAGAAGCATAAGCAAGAAAAAAAGTAGGAGAGACAAAATCGCCGCTTCTTTTCTTCCCATTCTTTCCTTCCCATTCTTCCCTGCAGGTGAGGAGGGCACCTTTTATATCTAAAGAGTTTTGGGATGGAATAATA</canonical_amplicon>
		<polymorphic_amplicon>ATCTAAACTGAGCAACCAATTTTCTTGAAAAGACGATTCTGCTGTGCTCGTCGGATGCTGCCCATTTTCTTCTTCATCTTTTGAGAATAGAAGAAGAYCTCACGAAGAATAAGATGAAGAAGCATAAGCAAGAAAAAAAGTAGGAGAGACAAAATCGCCGCTTCTTTTCTTCCCATTCTTTCCTTCCCATTCTTCCCTGCAGGTGAGGAGGGCACCTTTTATATCTAAAGAGTTTTGGGATGGAATAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33814</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>128789</contig_pos>
        <strand>+</strand>
        <context>TGAMCCCCCC[C/T]CCCCTCTCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAGTGCCACGTGTATGATGCAATACTATAACTCCTTCGATGACCCCCCC</left_flank>
        <right_flank>CCCCTCTCTCTCCCCTTGGTACCTTCTTGACACATGCCTCAAGATTCGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATTGATGGCTCAGTTCGCCGGGCTTACTGTACCTAGTGGTATGGGAGCCATGGCCCAGTGTTGGCCACAGTTCATGCAGATGGCTGCTCAGGTTAGTAAAGTTTTAGAGCATTTTAGTTTTGGGAGCTCAGATTTTTTTTTCCAAACTTCCTGAATATTCTTCCTGCGAAAACAATTCTAAGTAGTCATACATTTTGAAATTGTCTGCCGACTTTGAGTCCATATATCTCGGTTTCTGTAGAAGATATAAAAAAGTGCTCAACTAACAAAATGTTTATCATAATATCAGAAATATTTTGTTTGTTGCCACCTTTTTGATATCTCTTACAGGAACCGACATATATACGCTCAAATTAGACGGTTGGGATCTCCTCCTACCAGAGTGTTTACGGTATCCTACCTCTGTCCACTAATCTAGGCATCATATTCCCGCATATCTATTGCTCTTAAGTGCCACGTGTATGATGCAATACTATAACTCCTTCGATGACCCCCCCCCCCCTCTCTCTCCCCTTGGTACCTTCTTGACACATGCCTCAAGATTCGCCAAAAGAGCCAAACAATATTACATACAATCCCACCTTAATTAACCTCTCCTTCTCCATATTCTCTCAATTTCCTGTAGTCCCCTAGCACCACCCAAGTGTCTTCAATTTCCCGCATAATCCTCTCATCGGGGAGGTCCTTCATCCCATTCCATAATGAGCTTTTTGTCAGGTACCACACTTCCCACTGCTCCTTGCCAATTCTGATTTCTTCAAAGTGATGCAACAACAACAACAGAATCAACCTTGCGCTTCTCCAGACGCCGAGTGTTCGTCGAGGTTCGTTTTTTTGTGAATTTTTTATAAGATGCAACTTTTCTATAGTTGGTGGCGGTGGCTTATTATGTATGCGCATTCTTCAGAGTACGCTTTATAACAGAAAAAGTTCTAGTATCAAGAATTTTTGATATTTCAGCGGTCATGCCAGCGAATCATCTCCCACCACAACCGAGC</canonical>
            <polymorphic>CCATTGATGGCTCAGTTCGCCGGGCTTACTGTACCTAGTGGTATGGGAGCCATGGCCCAGTGTTGGCCACAGTTCATGCAGATGGCTGCTCAGGTTAGTAAAGTTTTAGAGCATTTTAGTTTTGGGAGCTCAGATTTTTTTTTCCAAACTTCCTGAATATTCTTCCTGCGAAAACAATTCTAAGTAGTCATACATTTTGAAATTGTCTGCCGACTTTGAGTCCATATATCTCGGTTTCTGTAGAAGATATAAAAAAGTGCTCAACTAACAAAATGTTTATCATAATATCAGAAATATTTTGTTTGTTGCCACCTTTTTGATATCTCTTACAGGAACCGACATATATACGCTCAAATTAGACGGTTGGGATCTCCTCCTACCAGAGTGTTTACGGTATCCTACCTCTGTCCACTAATCTAGGCATCATATTCCCGCATATCTATTGCTCTTAAGTGCCACGTGTATGATGCAATACTATAACTCCTTCGATGACCCCCCCYCCCCTCTCTCTCCCCTTGGTACCTTCTTGACACATGCCTCAAGATTCGCCAAAAGAGCCAAACAATATTACATACAATCCCACCTTAATTAACCTCTCCTTCTCCATATTCTCTCAATTTCCTGTAGTCCCCTAGCACCACCCAAGTGTCTTCAATTTCCCGCATAATCCTCTCATCGGGGAGGTCCTTCATCCCATTCCATAATGAGCTTTTTGTCAGGTACCACACTTCCCACTGCTCCTTGCCAATTCTGATTTCTTCAAAGTGATGCAACAACAACAACAGAATCAACCTTGCGCTTCTCCAGACGCCGAGTGTTCGTCGAGGTTCGTTTTTTTGTGAATTTTTTATAAGATGCAACTTTTCTATAGTTGGTGGCGGTGGCTTATTATGTATGCGCATTCTTCAGAGTACGCTTTATAACAGAAAAAGTTCTAGTATCAAGAATTTTTGATATTTCAGCGGTCATGCCAGCGAATCATCTCCCACCACAACCGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCTACCTCTGTCCACTAATCT</pcr_primer_p1>
		<pcr_primer_p2>GGACTACAGGAAATTGAGAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>ATCCTACCTCTGTCCACTAATCTAGGCATCATATTCCCGCATATCTATTGCTCTTAAGTGCCACGTGTATGATGCAATACTATAACTCCTTCGATGACCCCCCCCCCCCTCTCTCTCCCCTTGGTACCTTCTTGACACATGCCTCAAGATTCGCCAAAAGAGCCAAACAATATTACATACAATCCCACCTTAATTAACCTCTCCTTCTCCATATTCTCTCAATTTCCTGTAGTCC</canonical_amplicon>
		<polymorphic_amplicon>ATCCTACCTCTGTCCACTAATCTAGGCATCATATTCCCGCATATCTATTGCTCTTAAGTGCCACGTGTATGATGCAATACTATAACTCCTTCGATGACCCCCCCYCCCCTCTCTCTCCCCTTGGTACCTTCTTGACACATGCCTCAAGATTCGCCAAAAGAGCCAAACAATATTACATACAATCCCACCTTAATTAACCTCTCCTTCTCCATATTCTCTCAATTTCCTGTAGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33815</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>131865</contig_pos>
        <strand>+</strand>
        <context>CAATTTCATT[C/T]GAGTCTAACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCAAGAATTCCAACATGAACTATTATCAAACTTTTTAGGCAATTTCATT</left_flank>
        <right_flank>GAGTCTAACACAGATCTTCTTCTTCCGGACTGTTCTAAATGACATATGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGAAGGCGTCATCGCGAAGTGTTGGCATCACCTTTGCCACCTCCGCTTGCAATTGTGCCGTTTCGAGACGTTCGTTTCCGAATCCGCCACGTGATGCTGCTACTTCAGGAGACACTTGGAAGAAGAGTACGATGTCTGGTTTTGGGAGACCCTGGTCAGTGACGCGGACCCAGTCTTCCGGGAGACCTGGAAACAGAATTTGAGTTGTGAATATTTATGATATTATTTTCCCTAGTACTTCTAAATGTCAGTCTCTAAGTTCAAAAACTCATACAGGTGTTTTTAAAATGAGTCAGTTGTTTCGTTCTACCTACTCATAAGACTCATTAGTCATTGATTCCAGGTCAGAACCCCATGTGGAATTTTTTATTGACTAGACTTTAAACCATTCCCTCTTTGACGTCTATACCACACCTTTATTGGTTTTTCAAGAACTTTTGAACTTAAATCAAGAATTCCAACATGAACTATTATCAAACTTTTTAGGCAATTTCATTTGAGTCTAACACAGATCTTCTTCTTCCGGACTGTTCTAAATGACATATGGTTTTTTATGTGATGGTGCTGATAGAAGATAAGGTGGAAATAATTTTTTTGGAACCGGAACAATGATATCATTGAGAGATTCTTTTGGAAACAGACTGAACAAAACGAGTGGGACAGTATAGGGAGCCAACAGTTTTCGAACTTCTTGATTTTTTTCCGCTAGCACCATTTTTGATAAGATTCTGATGTTTCAGAACAAATGACCAATAGTAGGGAGCCCACACTGTCAATTTTGAGCTAAATTATCTAGGTTCCTGTGAGATATCAAAAATCTGTTAACTGATAAAAAGTGTGTTGTAATATTAACATCAGTTGACACATTTTCTATATCTTTCACCGGATTCTAATTGAGCTTAAAGTTGAAAGTTTGGGTGTGCTTCAATTAGAGGAAATACGGTAGTTTTAAAACTTCTTATCGGTTTTTCGGCAGCTAGCATTTTTGATACGAATCC</canonical>
            <polymorphic>CCAGAAGGCGTCATCGCGAAGTGTTGGCATCACCTTTGCCACCTCCGCTTGCAATTGTGCCGTTTCGAGACGTTCGTTTCCGAATCCGCCACGTGATGCTGCTACTTCAGGAGACACTTGGAAGAAGAGTACGATGTCTGGTTTTGGGAGACCCTGGTCAGTGACGCGGACCCAGTCTTCCGGGAGACCTGGAAACAGAATTTGAGTTGTGAATATTTATGATATTATTTTCCCTAGTACTTCTAAATGTCAGTCTCTAAGTTCAAAAACTCATACAGGTGTTTTTAAAATGAGTCAGTTGTTTCGTTCTACCTACTCATAAGACTCATTAGTCATTGATTCCAGGTCAGAACCCCATGTGGAATTTTTTATTGACTAGACTTTAAACCATTCCCTCTTTGACGTCTATACCACACCTTTATTGGTTTTTCAAGAACTTTTGAACTTAAATCAAGAATTCCAACATGAACTATTATCAAACTTTTTAGGCAATTTCATTYGAGTCTAACACAGATCTTCTTCTTCCGGACTGTTCTAAATGACATATGGTTTTTTATGTGATGGTGCTGATAGAAGATAAGGTGGAAATAATTTTTTTGGAACCGGAACAATGATATCATTGAGAGATTCTTTTGGAAACAGACTGAACAAAACGAGTGGGACAGTATAGGGAGCCAACAGTTTTCGAACTTCTTGATTTTTTTCCGCTAGCACCATTTTTGATAAGATTCTGATGTTTCAGAACAAATGACCAATAGTAGGGAGCCCACACTGTCAATTTTGAGCTAAATTATCTAGGTTCCTGTGAGATATCAAAAATCTGTTAACTGATAAAAAGTGTGTTGTAATATTAACATCAGTTGACACATTTTCTATATCTTTCACCGGATTCTAATTGAGCTTAAAGTTGAAAGTTTGGGTGTGCTTCAATTAGAGGAAATACGGTAGTTTTAAAACTTCTTATCGGTTTTTCGGCAGCTAGCATTTTTGATACGAATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACCACACCTTTATTGGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTCGTTTTGTTCAGTCTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATACCACACCTTTATTGGTTTTTCAAGAACTTTTGAACTTAAATCAAGAATTCCAACATGAACTATTATCAAACTTTTTAGGCAATTTCATTTGAGTCTAACACAGATCTTCTTCTTCCGGACTGTTCTAAATGACATATGGTTTTTTATGTGATGGTGCTGATAGAAGATAAGGTGGAAATAATTTTTTTGGAACCGGAACAATGATATCATTGAGAGATTCTTTTGGAAACAGACTGAACAAAACGAGT</canonical_amplicon>
		<polymorphic_amplicon>ATACCACACCTTTATTGGTTTTTCAAGAACTTTTGAACTTAAATCAAGAATTCCAACATGAACTATTATCAAACTTTTTAGGCAATTTCATTYGAGTCTAACACAGATCTTCTTCTTCCGGACTGTTCTAAATGACATATGGTTTTTTATGTGATGGTGCTGATAGAAGATAAGGTGGAAATAATTTTTTTGGAACCGGAACAATGATATCATTGAGAGATTCTTTTGGAAACAGACTGAACAAAACGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33816</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>131900</contig_pos>
        <strand>+</strand>
        <context>CCGGACTGTT[C/T]TAAATGACAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAGGCAATTTCATTTGAGTCTAACACAGATCTTCTTCTTCCGGACTGTT</left_flank>
        <right_flank>TAAATGACATATGGTTTTTTATGTGATGGTGCTGATAGAAGATAAGGTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCCACCTCCGCTTGCAATTGTGCCGTTTCGAGACGTTCGTTTCCGAATCCGCCACGTGATGCTGCTACTTCAGGAGACACTTGGAAGAAGAGTACGATGTCTGGTTTTGGGAGACCCTGGTCAGTGACGCGGACCCAGTCTTCCGGGAGACCTGGAAACAGAATTTGAGTTGTGAATATTTATGATATTATTTTCCCTAGTACTTCTAAATGTCAGTCTCTAAGTTCAAAAACTCATACAGGTGTTTTTAAAATGAGTCAGTTGTTTCGTTCTACCTACTCATAAGACTCATTAGTCATTGATTCCAGGTCAGAACCCCATGTGGAATTTTTTATTGACTAGACTTTAAACCATTCCCTCTTTGACGTCTATACCACACCTTTATTGGTTTTTCAAGAACTTTTGAACTTAAATCAAGAATTCCAACATGAACTATTATCAAACTTTTTAGGCAATTTCATTTGAGTCTAACACAGATCTTCTTCTTCCGGACTGTTCTAAATGACATATGGTTTTTTATGTGATGGTGCTGATAGAAGATAAGGTGGAAATAATTTTTTTGGAACCGGAACAATGATATCATTGAGAGATTCTTTTGGAAACAGACTGAACAAAACGAGTGGGACAGTATAGGGAGCCAACAGTTTTCGAACTTCTTGATTTTTTTCCGCTAGCACCATTTTTGATAAGATTCTGATGTTTCAGAACAAATGACCAATAGTAGGGAGCCCACACTGTCAATTTTGAGCTAAATTATCTAGGTTCCTGTGAGATATCAAAAATCTGTTAACTGATAAAAAGTGTGTTGTAATATTAACATCAGTTGACACATTTTCTATATCTTTCACCGGATTCTAATTGAGCTTAAAGTTGAAAGTTTGGGTGTGCTTCAATTAGAGGAAATACGGTAGTTTTAAAACTTCTTATCGGTTTTTCGGCAGCTAGCATTTTTGATACGAATCCGATGTTTTTTATCAGCCTTTGACCTTCTAACTTAT</canonical>
            <polymorphic>TTGCCACCTCCGCTTGCAATTGTGCCGTTTCGAGACGTTCGTTTCCGAATCCGCCACGTGATGCTGCTACTTCAGGAGACACTTGGAAGAAGAGTACGATGTCTGGTTTTGGGAGACCCTGGTCAGTGACGCGGACCCAGTCTTCCGGGAGACCTGGAAACAGAATTTGAGTTGTGAATATTTATGATATTATTTTCCCTAGTACTTCTAAATGTCAGTCTCTAAGTTCAAAAACTCATACAGGTGTTTTTAAAATGAGTCAGTTGTTTCGTTCTACCTACTCATAAGACTCATTAGTCATTGATTCCAGGTCAGAACCCCATGTGGAATTTTTTATTGACTAGACTTTAAACCATTCCCTCTTTGACGTCTATACCACACCTTTATTGGTTTTTCAAGAACTTTTGAACTTAAATCAAGAATTCCAACATGAACTATTATCAAACTTTTTAGGCAATTTCATTTGAGTCTAACACAGATCTTCTTCTTCCGGACTGTTYTAAATGACATATGGTTTTTTATGTGATGGTGCTGATAGAAGATAAGGTGGAAATAATTTTTTTGGAACCGGAACAATGATATCATTGAGAGATTCTTTTGGAAACAGACTGAACAAAACGAGTGGGACAGTATAGGGAGCCAACAGTTTTCGAACTTCTTGATTTTTTTCCGCTAGCACCATTTTTGATAAGATTCTGATGTTTCAGAACAAATGACCAATAGTAGGGAGCCCACACTGTCAATTTTGAGCTAAATTATCTAGGTTCCTGTGAGATATCAAAAATCTGTTAACTGATAAAAAGTGTGTTGTAATATTAACATCAGTTGACACATTTTCTATATCTTTCACCGGATTCTAATTGAGCTTAAAGTTGAAAGTTTGGGTGTGCTTCAATTAGAGGAAATACGGTAGTTTTAAAACTTCTTATCGGTTTTTCGGCAGCTAGCATTTTTGATACGAATCCGATGTTTTTTATCAGCCTTTGACCTTCTAACTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAGAATTCCAACATGAACTAT</pcr_primer_p1>
		<pcr_primer_p2>AAATCAAGAAGTTCGAAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAAGAATTCCAACATGAACTATTATCAAACTTTTTAGGCAATTTCATTTGAGTCTAACACAGATCTTCTTCTTCCGGACTGTTCTAAATGACATATGGTTTTTTATGTGATGGTGCTGATAGAAGATAAGGTGGAAATAATTTTTTTGGAACCGGAACAATGATATCATTGAGAGATTCTTTTGGAAACAGACTGAACAAAACGAGTGGGACAGTATAGGGAGCCAACAGTTTTCGAACTTCTTGATTT</canonical_amplicon>
		<polymorphic_amplicon>TCAAGAATTCCAACATGAACTATTATCAAACTTTTTAGGCAATTTCATTTGAGTCTAACACAGATCTTCTTCTTCCGGACTGTTYTAAATGACATATGGTTTTTTATGTGATGGTGCTGATAGAAGATAAGGTGGAAATAATTTTTTTGGAACCGGAACAATGATATCATTGAGAGATTCTTTTGGAAACAGACTGAACAAAACGAGTGGGACAGTATAGGGAGCCAACAGTTTTCGAACTTCTTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33817</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>217710</contig_pos>
        <strand>+</strand>
        <context>ATAGTTGCGC[A/G]AAAATAGAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAACTATACCTGTCAAATCTCAAATATCTAATTTTGTATAGTTGCGC</left_flank>
        <right_flank>AAAATAGAAGATATAGAGCTTGAAAAGCTTGAAAACAGGTGCAAAAATCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATGCAAGATATCGAAAGTCTGCCAACTGACAAATTACTTTTGATAATATGATAAAAAATTCATCAGTGGTCAACTTCCCGATCACTTTGAAAACGTTTGAGTGTGTAAAACAAATCTAGATGGAAAATTTCGAATTCACATAATTTCTAAAAATCACTAGTTTTCAGCTATTTGCCGGTTTTTAAAACTCACCTTTTTCCACATTTTCAGTAAAAAAGAGGTAGAAATCGGCATATATCTGGTAAACTAGGAATTTTCGAAAAATTCTGTAAATGCAAAGTTTTCAATCTAGGTATGTTTTATACCCTCCATAATTTTCAATGTGATCGAAAACTTGACAGCCGAGCTTCAGGCTTATGAAAATGTTCACAATAACAGAAAACCAAGAACAAAAATAAAAAATAGGTGCCTGATGGGGTGCTGATCTAATAGAGAAAAAGGTTTAATAAAAAACTATACCTGTCAAATCTCAAATATCTAATTTTGTATAGTTGCGCTAAAATAGAAGATATAGAGCTTGAAAAGCTTGAAAACAGGTGCAAAAATCCAAGGAAATTAAAAATTAAAAGAAAAAAGATTACTAGAAAAGTCTATTTCCGGGTTTCACACCCGGAATACCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATACGTACACTTTTCGTCACCTCCAAACAACACAACGCCATGTTTGTTCAATTTGAATTTAAGCAAATATTTTTGCGATTCTTCTGGTTAAACAGCACGGGCGGGCAAAAGGCCAGAACGACTCTTTGTTCCATCATGGATCTCAAGAACCGGAAAATTCAAGAAGCTTAGGCTGGAAAATGAGAATGGTGTACTAAAAGGGGAAAATCTTCTTACGTAGTTCGTCTCCTGATTTTTCGGATCACTGAATACAATTTTTAAGATTTGCGTATGTCAAAAAAGTCCGCACAAATATGTGGGTGGGGGATAATAATAAGAAAATTATCACATGTATCTTGTG</canonical>
            <polymorphic>CAATGCAAGATATCGAAAGTCTGCCAACTGACAAATTACTTTTGATAATATGATAAAAAATTCATCAGTGGTCAACTTCCCGATCACTTTGAAAACGTTTGAGTGTGTAAAACAAATCTAGATGGAAAATTTCGAATTCACATAATTTCTAAAAATCACTAGTTTTCAGCTATTTGCCGGTTTTTAAAACTCACCTTTTTCCACATTTTCAGTAAAAAAGAGGTAGAAATCGGCATATATCTGGTAAACTAGGAATTTTCGAAAAATTCTGTAAATGCAAAGTTTTCAATCTAGGTATGTTTTATACCCTCCATAATTTTCAATGTGATCGAAAACTTGACAGCCGAGCTTCAGGCTTATGAAAATGTTCACAATAACAGAAAACCAAGAACAAAAATAAAAAATAGGTGCCTGATGGGGTGCTGATCTAATAGAGAAAAAGGTTTAATAAAAAACTATACCTGTCAAATCTCAAATATCTAATTTTGTATAGTTGCGCRAAAATAGAAGATATAGAGCTTGAAAAGCTTGAAAACAGGTGCAAAAATCCAAGGAAATTAAAAATTAAAAGAAAAAAGATTACTAGAAAAGTCTATTTCCGGGTTTCACACCCGGAATACCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATACGTACACTTTTCGTCACCTCCAAACAACACAACGCCATGTTTGTTCAATTTGAATTTAAGCAAATATTTTTGCGATTCTTCTGGTTAAACAGCACGGGCGGGCAAAAGGCCAGAACGACTCTTTGTTCCATCATGGATCTCAAGAACCGGAAAATTCAAGAAGCTTAGGCTGGAAAATGAGAATGGTGTACTAAAAGGGGAAAATCTTCTTACGTAGTTCGTCTCCTGATTTTTCGGATCACTGAATACAATTTTTAAGATTTGCGTATGTCAAAAAAGTCCGCACAAATATGTGGGTGGGGGATAATAATAAGAAAATTATCACATGTATCTTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGCTGATCTAATAGAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GTATTAGAGAACGCGAAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGTGCTGATCTAATAGAGAAAAAGGTTTAATAAAAAACTATACCTGTCAAATCTCAAATATCTAATTTTGTATAGTTGCGCTAAAATAGAAGATATAGAGCTTGAAAAGCTTGAAAACAGGTGCAAAAATCCAAGGAAATTAAAAATTAAAAGAAAAAAGATTACTAGAAAAGTCTATTTCCGGGTTTCACACCCGGAATACCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATAC</canonical_amplicon>
		<polymorphic_amplicon>GGTGCTGATCTAATAGAGAAAAAGGTTTAATAAAAAACTATACCTGTCAAATCTCAAATATCTAATTTTGTATAGTTGCGCRAAAATAGAAGATATAGAGCTTGAAAAGCTTGAAAACAGGTGCAAAAATCCAAGGAAATTAAAAATTAAAAGAAAAAAGATTACTAGAAAAGTCTATTTCCGGGTTTCACACCCGGAATACCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33818</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>217800</contig_pos>
        <strand>+</strand>
        <context>TTWCTAGAAA[A/T]GTCTATTTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGCAAAAATCCAAGGAAATTAAAAATTAAAAGAAAAAAGATTACTAGAAA</left_flank>
        <right_flank>GTCTATTTCCGGGTTTCACACCCGGAATACCAGCAAATTTTGTTTTGGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAACGTTTGAGTGTGTAAAACAAATCTAGATGGAAAATTTCGAATTCACATAATTTCTAAAAATCACTAGTTTTCAGCTATTTGCCGGTTTTTAAAACTCACCTTTTTCCACATTTTCAGTAAAAAAGAGGTAGAAATCGGCATATATCTGGTAAACTAGGAATTTTCGAAAAATTCTGTAAATGCAAAGTTTTCAATCTAGGTATGTTTTATACCCTCCATAATTTTCAATGTGATCGAAAACTTGACAGCCGAGCTTCAGGCTTATGAAAATGTTCACAATAACAGAAAACCAAGAACAAAAATAAAAAATAGGTGCCTGATGGGGTGCTGATCTAATAGAGAAAAAGGTTTAATAAAAAACTATACCTGTCAAATCTCAAATATCTAATTTTGTATAGTTGCGCTAAAATAGAAGATATAGAGCTTGAAAAGCTTGAAAACAGGTGCAAAAATCCAAGGAAATTAAAAATTAAAAGAAAAAAGATTACTAGAAAAGTCTATTTCCGGGTTTCACACCCGGAATACCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATACGTACACTTTTCGTCACCTCCAAACAACACAACGCCATGTTTGTTCAATTTGAATTTAAGCAAATATTTTTGCGATTCTTCTGGTTAAACAGCACGGGCGGGCAAAAGGCCAGAACGACTCTTTGTTCCATCATGGATCTCAAGAACCGGAAAATTCAAGAAGCTTAGGCTGGAAAATGAGAATGGTGTACTAAAAGGGGAAAATCTTCTTACGTAGTTCGTCTCCTGATTTTTCGGATCACTGAATACAATTTTTAAGATTTGCGTATGTCAAAAAAGTCCGCACAAATATGTGGGTGGGGGATAATAATAAGAAAATTATCACATGTATCTTGTGATGTAACATTCAAGAAGGCATAAGAAGGAGGATTCCAGAAATGAATAACAAAAACCTCTAAATTTTGTCAAGAGTCCGAAAGTGGGATTA</canonical>
            <polymorphic>GAAAACGTTTGAGTGTGTAAAACAAATCTAGATGGAAAATTTCGAATTCACATAATTTCTAAAAATCACTAGTTTTCAGCTATTTGCCGGTTTTTAAAACTCACCTTTTTCCACATTTTCAGTAAAAAAGAGGTAGAAATCGGCATATATCTGGTAAACTAGGAATTTTCGAAAAATTCTGTAAATGCAAAGTTTTCAATCTAGGTATGTTTTATACCCTCCATAATTTTCAATGTGATCGAAAACTTGACAGCCGAGCTTCAGGCTTATGAAAATGTTCACAATAACAGAAAACCAAGAACAAAAATAAAAAATAGGTGCCTGATGGGGTGCTGATCTAATAGAGAAAAAGGTTTAATAAAAAACTATACCTGTCAAATCTCAAATATCTAATTTTGTATAGTTGCGCTAAAATAGAAGATATAGAGCTTGAAAAGCTTGAAAACAGGTGCAAAAATCCAAGGAAATTAAAAATTAAAAGAAAAAAGATTACTAGAAAWGTCTATTTCCGGGTTTCACACCCGGAATACCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATACGTACACTTTTCGTCACCTCCAAACAACACAACGCCATGTTTGTTCAATTTGAATTTAAGCAAATATTTTTGCGATTCTTCTGGTTAAACAGCACGGGCGGGCAAAAGGCCAGAACGACTCTTTGTTCCATCATGGATCTCAAGAACCGGAAAATTCAAGAAGCTTAGGCTGGAAAATGAGAATGGTGTACTAAAAGGGGAAAATCTTCTTACGTAGTTCGTCTCCTGATTTTTCGGATCACTGAATACAATTTTTAAGATTTGCGTATGTCAAAAAAGTCCGCACAAATATGTGGGTGGGGGATAATAATAAGAAAATTATCACATGTATCTTGTGATGTAACATTCAAGAAGGCATAAGAAGGAGGATTCCAGAAATGAATAACAAAAACCTCTAAATTTTGTCAAGAGTCCGAAAGTGGGATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATAGAGCTTGAAAAGCTTGAA</pcr_primer_p1>
		<pcr_primer_p2>GTGCTGTTTAACCAGAAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATATAGAGCTTGAAAAGCTTGAAAACAGGTGCAAAAATCCAAGGAAATTAAAAATTAAAAGAAAAAAGATTACTAGAAAAGTCTATTTCCGGGTTTCACACCCGGAATACCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATACGTACACTTTTCGTCACCTCCAAACAACACAACGCCATGTTTGTTCAATTTGAATTTAAGCAAATATTTTTGCGATTCTTCTGGTTAAACAGCAC</canonical_amplicon>
		<polymorphic_amplicon>ATATAGAGCTTGAAAAGCTTGAAAACAGGTGCAAAAATCCAAGGAAATTAAAAATTAAAAGAAAAAAGATTACTAGAAAWGTCTATTTCCGGGTTTCACACCCGGAATACCAGCAAATTTTGTTTTGGATGAAACTTTTCGCGTTCTCTAATACGTACACTTTTCGTCACCTCCAAACAACACAACGCCATGTTTGTTCAATTTGAATTTAAGCAAATATTTTTGCGATTCTTCTGGTTAAACAGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33819</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>260781</contig_pos>
        <strand></strand>
        <context>aagttaaagg[T/C]caagggCCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCTTGATATCTTTGATAGGAAGCGAGGTGAATTGGCTCAAAGTTAAAGG</left_flank>
        <right_flank>CAAGGGCCCAATCGGGCAAAATCAGCTTGACCAAAGTTTAACAGAAAGTG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGACCTATTGAAAGGGCTGTCTTTTTGATCCCACCTGCCTCGTATCACTACTAGGTATCTTTTGTATCCTTCCTGGGAGGAAAACTATATGACGTGCTAATGTGATACGTGCCGTAAATAGGTACCCAGAAGTACAGTAGCAATATTGACGAAGATATTAACTGACCTATAAGATCCGTTATGAATTTCTAGACTGAAAACAATAGAGTATTAATTTCAAAAGTAACTCTATACATGTGGGCGGTCCCAGACACTAATGAATTATGTGTTTAAAAAAGCGTCACCTAGAGCTTTTCAAAAATAAAAGTCGCGTAAAACCTCCAATAGAAGAGCATCCACACTGACAAGTTTGAGCTCAATTATCTCGGTTCCTGTCAGAGATAACAAATGTTTGTCAACTGATAAAATTTTTGTGATATTATGATAAACATTTTATCAGTTAAATTTTTCTTGATATCTTTGATAGGAAGCGAGGTGAATTGGCTCAAAGTTAAAGGTCAAGGGCCCAATCGGGCAAAATCAGCTTGACCAAAGTTTAACAGAAAGTGTCAAAGAAAGTTTTCTTGAAATGTTTATAGAGACAACTAAAATAAACATGTCCTATTCTGGAAACTTTTTTCTTTGAAAATGGGGACTTACATGGGGATCATGTGGTCCCGCCCGTTTCACAACAAAAAAGTAAACATAAATCCACTTTTCACCATTATGCTCCGCCCGTTTTTGTATTATGCTCCGAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAAAAAATTCGGTGGGGGTCAAAAAATCAAAAATAGTTTTGGTCTGAGAAAAGTTTCTCGGGACAAAGGTTGCTCTCGGTAGACATGTGTAGAAATTGGATGAATAAGGGGGACAAAGGGGAAACG</canonical>
            <polymorphic>ACTGACCTATTGAAAGGGCTGTCTTTTTGATCCCACCTGCCTCGTATCACTACTAGGTATCTTTTGTATCCTTCCTGGGAGGAAAACTATATGACGTGCTAATGTGATACGTGCCGTAAATAGGTACCCAGAAGTACAGTAGCAATATTGACGAAGATATTAACTGACCTATAAGATCCGTTATGAATTTCTAGACTGAAAACAATAGAGTATTAATTTCAAAAGTAACTCTATACATGTGGGCGGTCCCAGACACTAATGAATTATGTGTTTAAAAAAGCGTCACCTAGAGCTTTTCAAAAATAAAAGTCGCGTAAAACCTCCAATAGAAGAGCATCCACACTGACAAGTTTGAGCTCAATTATCTCGGTTCCTGTCAGAGATAACAAATGTTTGTCAACTGATAAAATTTTTGTGATATTATGATAAACATTTTATCAGTTAAATTTTTCTTGATATCTTTGATAGGAAGCGAGGTGAATTGGCTCAAAGTTAAAGGYCAAGGGCCCAATCGGGCAAAATCAGCTTGACCAAAGTTTAACAGAAAGTGTCAAAGAAAGTTTTCTTGAAATGTTTATAGAGACAACTAAAATAAACATGTCCTATTCTGGAAACTTTTTTCTTTGAAAATGGGGACTTACATGGGGATCATGTGGTCCCGCCCGTTTCACAACAAAAAAGTAAACATAAATCCACTTTTCACCATTATGCTCCGCCCGTTTTTGTATTATGCTCCGAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAAAAAATTCGGTGGGGGTCAAAAAATCAAAAATAGTTTTGGTCTGAGAAAAGTTTCTCGGGACAAAGGTTGCTCTCGGTAGACATGTGTAGAAATTGGATGAATAAGGGGGACAAAGGGGAAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTAGAGCTTTTCAAAAATAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTGACACTTTCTGTTAAACTTTG</pcr_primer_p2>
		<pcr_amplicon_size>270</pcr_amplicon_size>
		<canonical_amplicon>CCTAGAGCTTTTCAAAAATAAAAGTCGCGTAAAACCTCCAATAGAAGAGCATCCACACTGACAAGTTTGAGCTCAATTATCTCGGTTCCTGTCAGAGATAACAAATGTTTGTCAACTGATAAAATTTTTGTGATATTATGATAAACATTTTATCAGTTAAATTTTTCTTGATATCTTTGATAGGAAGCGAGGTGAATTGGCTCAAAGTTAAAGGTCAAGGGCCCAATCGGGCAAAATCAGCTTGACCAAAGTTTAACAGAAAGTGTCAAA</canonical_amplicon>
		<polymorphic_amplicon>CCTAGAGCTTTTCAAAAATAAAAGTCGCGTAAAACCTCCAATAGAAGAGCATCCACACTGACAAGTTTGAGCTCAATTATCTCGGTTCCTGTCAGAGATAACAAATGTTTGTCAACTGATAAAATTTTTGTGATATTATGATAAACATTTTATCAGTTAAATTTTTCTTGATATCTTTGATAGGAAGCGAGGTGAATTGGCTCAAAGTTAAAGGYCAAGGGCCCAATCGGGCAAAATCAGCTTGACCAAAGTTTAACAGAAAGTGTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33820</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>261017</contig_pos>
        <strand>+</strand>
        <context>TATTATGCTC[C/G]GAGAAGCTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CATAAATCCACTTTTCACCATTATGCTCCGCCCGTTTTTGTATTATGCTC</left_flank>
        <right_flank>GAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTGGGCGGTCCCAGACACTAATGAATTATGTGTTTAAAAAAGCGTCACCTAGAGCTTTTCAAAAATAAAAGTCGCGTAAAACCTCCAATAGAAGAGCATCCACACTGACAAGTTTGAGCTCAATTATCTCGGTTCCTGTCAGAGATAACAAATGTTTGTCAACTGATAAAATTTTTGTGATATTATGATAAACATTTTATCAGTTAAATTTTTCTTGATATCTTTGATAGGAAGCGAGGTGAATTGGCTCAAAGTTAAAGGTCAAGGGCCCAATCGGGCAAAATCAGCTTGACCAAAGTTTAACAGAAAGTGTCAAAGAAAGTTTTCTTGAAATGTTTATAGAGACAACTAAAATAAACATGTCCTATTCTGGAAACTTTTTTCTTTGAAAATGGGGACTTACATGGGGATCATGTGGTCCCGCCCGTTTCACAACAAAAAAGTAAACATAAATCCACTTTTCACCATTATGCTCCGCCCGTTTTTGTATTATGCTCCGAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAAAAAATTCGGTGGGGGTCAAAAAATCAAAAATAGTTTTGGTCTGAGAAAAGTTTCTCGGGACAAAGGTTGCTCTCGGTAGACATGTGTAGAAATTGGATGAATAAGGGGGACAAAGGGGAAACGGAAACAGGAGAAAGTTATGAATGAATTGGTGGCTATTGGGGAGAAAGAATGAGAAGGACTACCACTTTTTTGGGAGTGGACGGAAGAGTTTCGAAATGCGACGATGAACTTTAGACTTGAATTTTTATTAGAAACTAAACTTTTTTATTAGGGCATAGGGGATGGGGTTGAAAATTTGAATGCTGTTATTGTCAAATTAATAAAAAACTAACACCTGATGATCTGAAAATCGGCGC</canonical>
            <polymorphic>ATGTGGGCGGTCCCAGACACTAATGAATTATGTGTTTAAAAAAGCGTCACCTAGAGCTTTTCAAAAATAAAAGTCGCGTAAAACCTCCAATAGAAGAGCATCCACACTGACAAGTTTGAGCTCAATTATCTCGGTTCCTGTCAGAGATAACAAATGTTTGTCAACTGATAAAATTTTTGTGATATTATGATAAACATTTTATCAGTTAAATTTTTCTTGATATCTTTGATAGGAAGCGAGGTGAATTGGCTCAAAGTTAAAGGTCAAGGGCCCAATCGGGCAAAATCAGCTTGACCAAAGTTTAACAGAAAGTGTCAAAGAAAGTTTTCTTGAAATGTTTATAGAGACAACTAAAATAAACATGTCCTATTCTGGAAACTTTTTTCTTTGAAAATGGGGACTTACATGGGGATCATGTGGTCCCGCCCGTTTCACAACAAAAAAGTAAACATAAATCCACTTTTCACCATTATGCTCCGCCCGTTTTTGTATTATGCTCSGAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAAAAAATTCGGTGGGGGTCAAAAAATCAAAAATAGTTTTGGTCTGAGAAAAGTTTCTCGGGACAAAGGTTGCTCTCGGTAGACATGTGTAGAAATTGGATGAATAAGGGGGACAAAGGGGAAACGGAAACAGGAGAAAGTTATGAATGAATTGGTGGCTATTGGGGAGAAAGAATGAGAAGGACTACCACTTTTTTGGGAGTGGACGGAAGAGTTTCGAAATGCGACGATGAACTTTAGACTTGAATTTTTATTAGAAACTAAACTTTTTTATTAGGGCATAGGGGATGGGGTTGAAAATTTGAATGCTGTTATTGTCAAATTAATAAAAAACTAACACCTGATGATCTGAAAATCGGCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTACATGGGGATCATGTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCACTTTCTAAGCACCTAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ACTTACATGGGGATCATGTGGTCCCGCCCGTTTCACAACAAAAAAGTAAACATAAATCCACTTTTCACCATTATGCTCCGCCCGTTTTTGTATTATGCTCCGAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACTTACATGGGGATCATGTGGTCCCGCCCGTTTCACAACAAAAAAGTAAACATAAATCCACTTTTCACCATTATGCTCCGCCCGTTTTTGTATTATGCTCSGAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33821</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>261046</contig_pos>
        <strand></strand>
        <context>ATTTCTCGGG[G/A]AAAAARKTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GCCCGTTTTTGTATTATGCTCCGAGAAGCTTTCTGATCTAATTTCTCGGG</left_flank>
        <right_flank>AAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTGTTTAAAAAAGCGTCACCTAGAGCTTTTCAAAAATAAAAGTCGCGTAAAACCTCCAATAGAAGAGCATCCACACTGACAAGTTTGAGCTCAATTATCTCGGTTCCTGTCAGAGATAACAAATGTTTGTCAACTGATAAAATTTTTGTGATATTATGATAAACATTTTATCAGTTAAATTTTTCTTGATATCTTTGATAGGAAGCGAGGTGAATTGGCTCAAAGTTAAAGGTCAAGGGCCCAATCGGGCAAAATCAGCTTGACCAAAGTTTAACAGAAAGTGTCAAAGAAAGTTTTCTTGAAATGTTTATAGAGACAACTAAAATAAACATGTCCTATTCTGGAAACTTTTTTCTTTGAAAATGGGGACTTACATGGGGATCATGTGGTCCCGCCCGTTTCACAACAAAAAAGTAAACATAAATCCACTTTTCACCATTATGCTCCGCCCGTTTTTGTATTATGCTCCGAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAAAAAATTCGGTGGGGGTCAAAAAATCAAAAATAGTTTTGGTCTGAGAAAAGTTTCTCGGGACAAAGGTTGCTCTCGGTAGACATGTGTAGAAATTGGATGAATAAGGGGGACAAAGGGGAAACGGAAACAGGAGAAAGTTATGAATGAATTGGTGGCTATTGGGGAGAAAGAATGAGAAGGACTACCACTTTTTTGGGAGTGGACGGAAGAGTTTCGAAATGCGACGATGAACTTTAGACTTGAATTTTTATTAGAAACTAAACTTTTTTATTAGGGCATAGGGGATGGGGTTGAAAATTTGAATGCTGTTATTGTCAAATTAATAAAAAACTAACACCTGATGATCTGAAAATCGGCGCTTTTTTGTTCTACAAAAAAGTGTGGCAAA</canonical>
            <polymorphic>ATGTGTTTAAAAAAGCGTCACCTAGAGCTTTTCAAAAATAAAAGTCGCGTAAAACCTCCAATAGAAGAGCATCCACACTGACAAGTTTGAGCTCAATTATCTCGGTTCCTGTCAGAGATAACAAATGTTTGTCAACTGATAAAATTTTTGTGATATTATGATAAACATTTTATCAGTTAAATTTTTCTTGATATCTTTGATAGGAAGCGAGGTGAATTGGCTCAAAGTTAAAGGTCAAGGGCCCAATCGGGCAAAATCAGCTTGACCAAAGTTTAACAGAAAGTGTCAAAGAAAGTTTTCTTGAAATGTTTATAGAGACAACTAAAATAAACATGTCCTATTCTGGAAACTTTTTTCTTTGAAAATGGGGACTTACATGGGGATCATGTGGTCCCGCCCGTTTCACAACAAAAAAGTAAACATAAATCCACTTTTCACCATTATGCTCCGCCCGTTTTTGTATTATGCTCCGAGAAGCTTTCTGATCTAATTTCTCGGGRAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAAAAAATTCGGTGGGGGTCAAAAAATCAAAAATAGTTTTGGTCTGAGAAAAGTTTCTCGGGACAAAGGTTGCTCTCGGTAGACATGTGTAGAAATTGGATGAATAAGGGGGACAAAGGGGAAACGGAAACAGGAGAAAGTTATGAATGAATTGGTGGCTATTGGGGAGAAAGAATGAGAAGGACTACCACTTTTTTGGGAGTGGACGGAAGAGTTTCGAAATGCGACGATGAACTTTAGACTTGAATTTTTATTAGAAACTAAACTTTTTTATTAGGGCATAGGGGATGGGGTTGAAAATTTGAATGCTGTTATTGTCAAATTAATAAAAAACTAACACCTGATGATCTGAAAATCGGCGCTTTTTTGTTCTACAAAAAAGTGTGGCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTACATGGGGATCATGTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCACTTTCTAAGCACCTAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ACTTACATGGGGATCATGTGGTCCCGCCCGTTTCACAACAAAAAAGTAAACATAAATCCACTTTTCACCATTATGCTCCGCCCGTTTTTGTATTATGCTCCGAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACTTACATGGGGATCATGTGGTCCCGCCCGTTTCACAACAAAAAAGTAAACATAAATCCACTTTTCACCATTATGCTCCGCCCGTTTTTGTATTATGCTCCGAGAAGCTTTCTGATCTAATTTCTCGGGRAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33822</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>261052</contig_pos>
        <strand></strand>
        <context>CGGGRAAAAA[A/G]KTTTTTTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGTATTATGCTCCGAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAA</left_flank>
        <right_flank>GTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGAGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAAAAGCGTCACCTAGAGCTTTTCAAAAATAAAAGTCGCGTAAAACCTCCAATAGAAGAGCATCCACACTGACAAGTTTGAGCTCAATTATCTCGGTTCCTGTCAGAGATAACAAATGTTTGTCAACTGATAAAATTTTTGTGATATTATGATAAACATTTTATCAGTTAAATTTTTCTTGATATCTTTGATAGGAAGCGAGGTGAATTGGCTCAAAGTTAAAGGTCAAGGGCCCAATCGGGCAAAATCAGCTTGACCAAAGTTTAACAGAAAGTGTCAAAGAAAGTTTTCTTGAAATGTTTATAGAGACAACTAAAATAAACATGTCCTATTCTGGAAACTTTTTTCTTTGAAAATGGGGACTTACATGGGGATCATGTGGTCCCGCCCGTTTCACAACAAAAAAGTAAACATAAATCCACTTTTCACCATTATGCTCCGCCCGTTTTTGTATTATGCTCCGAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAAAAAATTCGGTGGGGGTCAAAAAATCAAAAATAGTTTTGGTCTGAGAAAAGTTTCTCGGGACAAAGGTTGCTCTCGGTAGACATGTGTAGAAATTGGATGAATAAGGGGGACAAAGGGGAAACGGAAACAGGAGAAAGTTATGAATGAATTGGTGGCTATTGGGGAGAAAGAATGAGAAGGACTACCACTTTTTTGGGAGTGGACGGAAGAGTTTCGAAATGCGACGATGAACTTTAGACTTGAATTTTTATTAGAAACTAAACTTTTTTATTAGGGCATAGGGGATGGGGTTGAAAATTTGAATGCTGTTATTGTCAAATTAATAAAAAACTAACACCTGATGATCTGAAAATCGGCGCTTTTTTGTTCTACAAAAAAGTGTGGCAAAATCGTA</canonical>
            <polymorphic>TTAAAAAAGCGTCACCTAGAGCTTTTCAAAAATAAAAGTCGCGTAAAACCTCCAATAGAAGAGCATCCACACTGACAAGTTTGAGCTCAATTATCTCGGTTCCTGTCAGAGATAACAAATGTTTGTCAACTGATAAAATTTTTGTGATATTATGATAAACATTTTATCAGTTAAATTTTTCTTGATATCTTTGATAGGAAGCGAGGTGAATTGGCTCAAAGTTAAAGGTCAAGGGCCCAATCGGGCAAAATCAGCTTGACCAAAGTTTAACAGAAAGTGTCAAAGAAAGTTTTCTTGAAATGTTTATAGAGACAACTAAAATAAACATGTCCTATTCTGGAAACTTTTTTCTTTGAAAATGGGGACTTACATGGGGATCATGTGGTCCCGCCCGTTTCACAACAAAAAAGTAAACATAAATCCACTTTTCACCATTATGCTCCGCCCGTTTTTGTATTATGCTCCGAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAARGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAAAAAATTCGGTGGGGGTCAAAAAATCAAAAATAGTTTTGGTCTGAGAAAAGTTTCTCGGGACAAAGGTTGCTCTCGGTAGACATGTGTAGAAATTGGATGAATAAGGGGGACAAAGGGGAAACGGAAACAGGAGAAAGTTATGAATGAATTGGTGGCTATTGGGGAGAAAGAATGAGAAGGACTACCACTTTTTTGGGAGTGGACGGAAGAGTTTCGAAATGCGACGATGAACTTTAGACTTGAATTTTTATTAGAAACTAAACTTTTTTATTAGGGCATAGGGGATGGGGTTGAAAATTTGAATGCTGTTATTGTCAAATTAATAAAAAACTAACACCTGATGATCTGAAAATCGGCGCTTTTTTGTTCTACAAAAAAGTGTGGCAAAATCGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTACATGGGGATCATGTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCACTTTCTAAGCACCTAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ACTTACATGGGGATCATGTGGTCCCGCCCGTTTCACAACAAAAAAGTAAACATAAATCCACTTTTCACCATTATGCTCCGCCCGTTTTTGTATTATGCTCCGAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACTTACATGGGGATCATGTGGTCCCGCCCGTTTCACAACAAAAAAGTAAACATAAATCCACTTTTCACCATTATGCTCCGCCCGTTTTTGTATTATGCTCCGAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAARGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33823</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>261053</contig_pos>
        <strand></strand>
        <context>GGGRAAAAAR[G/T]TTTTTTTCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTGTATTATGCTCCGAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAA</left_flank>
        <right_flank>TTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGAGAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAAAAGCGTCACCTAGAGCTTTTCAAAAATAAAAGTCGCGTAAAACCTCCAATAGAAGAGCATCCACACTGACAAGTTTGAGCTCAATTATCTCGGTTCCTGTCAGAGATAACAAATGTTTGTCAACTGATAAAATTTTTGTGATATTATGATAAACATTTTATCAGTTAAATTTTTCTTGATATCTTTGATAGGAAGCGAGGTGAATTGGCTCAAAGTTAAAGGTCAAGGGCCCAATCGGGCAAAATCAGCTTGACCAAAGTTTAACAGAAAGTGTCAAAGAAAGTTTTCTTGAAATGTTTATAGAGACAACTAAAATAAACATGTCCTATTCTGGAAACTTTTTTCTTTGAAAATGGGGACTTACATGGGGATCATGTGGTCCCGCCCGTTTCACAACAAAAAAGTAAACATAAATCCACTTTTCACCATTATGCTCCGCCCGTTTTTGTATTATGCTCCGAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAAAAAATTCGGTGGGGGTCAAAAAATCAAAAATAGTTTTGGTCTGAGAAAAGTTTCTCGGGACAAAGGTTGCTCTCGGTAGACATGTGTAGAAATTGGATGAATAAGGGGGACAAAGGGGAAACGGAAACAGGAGAAAGTTATGAATGAATTGGTGGCTATTGGGGAGAAAGAATGAGAAGGACTACCACTTTTTTGGGAGTGGACGGAAGAGTTTCGAAATGCGACGATGAACTTTAGACTTGAATTTTTATTAGAAACTAAACTTTTTTATTAGGGCATAGGGGATGGGGTTGAAAATTTGAATGCTGTTATTGTCAAATTAATAAAAAACTAACACCTGATGATCTGAAAATCGGCGCTTTTTTGTTCTACAAAAAAGTGTGGCAAAATCGTAA</canonical>
            <polymorphic>TAAAAAAGCGTCACCTAGAGCTTTTCAAAAATAAAAGTCGCGTAAAACCTCCAATAGAAGAGCATCCACACTGACAAGTTTGAGCTCAATTATCTCGGTTCCTGTCAGAGATAACAAATGTTTGTCAACTGATAAAATTTTTGTGATATTATGATAAACATTTTATCAGTTAAATTTTTCTTGATATCTTTGATAGGAAGCGAGGTGAATTGGCTCAAAGTTAAAGGTCAAGGGCCCAATCGGGCAAAATCAGCTTGACCAAAGTTTAACAGAAAGTGTCAAAGAAAGTTTTCTTGAAATGTTTATAGAGACAACTAAAATAAACATGTCCTATTCTGGAAACTTTTTTCTTTGAAAATGGGGACTTACATGGGGATCATGTGGTCCCGCCCGTTTCACAACAAAAAAGTAAACATAAATCCACTTTTCACCATTATGCTCCGCCCGTTTTTGTATTATGCTCCGAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAKTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAAAAAATTCGGTGGGGGTCAAAAAATCAAAAATAGTTTTGGTCTGAGAAAAGTTTCTCGGGACAAAGGTTGCTCTCGGTAGACATGTGTAGAAATTGGATGAATAAGGGGGACAAAGGGGAAACGGAAACAGGAGAAAGTTATGAATGAATTGGTGGCTATTGGGGAGAAAGAATGAGAAGGACTACCACTTTTTTGGGAGTGGACGGAAGAGTTTCGAAATGCGACGATGAACTTTAGACTTGAATTTTTATTAGAAACTAAACTTTTTTATTAGGGCATAGGGGATGGGGTTGAAAATTTGAATGCTGTTATTGTCAAATTAATAAAAAACTAACACCTGATGATCTGAAAATCGGCGCTTTTTTGTTCTACAAAAAAGTGTGGCAAAATCGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTACATGGGGATCATGTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCACTTTCTAAGCACCTAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ACTTACATGGGGATCATGTGGTCCCGCCCGTTTCACAACAAAAAAGTAAACATAAATCCACTTTTCACCATTATGCTCCGCCCGTTTTTGTATTATGCTCCGAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACTTACATGGGGATCATGTGGTCCCGCCCGTTTCACAACAAAAAAGTAAACATAAATCCACTTTTCACCATTATGCTCCGCCCGTTTTTGTATTATGCTCCGAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAKTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33824</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>261075</contig_pos>
        <strand></strand>
        <context>AAAAGTTTTT[G/A]AAAAAAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTT</left_flank>
        <right_flank>AAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAAAAATAAAAGTCGCGTAAAACCTCCAATAGAAGAGCATCCACACTGACAAGTTTGAGCTCAATTATCTCGGTTCCTGTCAGAGATAACAAATGTTTGTCAACTGATAAAATTTTTGTGATATTATGATAAACATTTTATCAGTTAAATTTTTCTTGATATCTTTGATAGGAAGCGAGGTGAATTGGCTCAAAGTTAAAGGTCAAGGGCCCAATCGGGCAAAATCAGCTTGACCAAAGTTTAACAGAAAGTGTCAAAGAAAGTTTTCTTGAAATGTTTATAGAGACAACTAAAATAAACATGTCCTATTCTGGAAACTTTTTTCTTTGAAAATGGGGACTTACATGGGGATCATGTGGTCCCGCCCGTTTCACAACAAAAAAGTAAACATAAATCCACTTTTCACCATTATGCTCCGCCCGTTTTTGTATTATGCTCCGAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAAAAAATTCGGTGGGGGTCAAAAAATCAAAAATAGTTTTGGTCTGAGAAAAGTTTCTCGGGACAAAGGTTGCTCTCGGTAGACATGTGTAGAAATTGGATGAATAAGGGGGACAAAGGGGAAACGGAAACAGGAGAAAGTTATGAATGAATTGGTGGCTATTGGGGAGAAAGAATGAGAAGGACTACCACTTTTTTGGGAGTGGACGGAAGAGTTTCGAAATGCGACGATGAACTTTAGACTTGAATTTTTATTAGAAACTAAACTTTTTTATTAGGGCATAGGGGATGGGGTTGAAAATTTGAATGCTGTTATTGTCAAATTAATAAAAAACTAACACCTGATGATCTGAAAATCGGCGCTTTTTTGTTCTACAAAAAAGTGTGGCAAAATCGTAATATTTCAGACTTTTGCTTTGTT</canonical>
            <polymorphic>TTTCAAAAATAAAAGTCGCGTAAAACCTCCAATAGAAGAGCATCCACACTGACAAGTTTGAGCTCAATTATCTCGGTTCCTGTCAGAGATAACAAATGTTTGTCAACTGATAAAATTTTTGTGATATTATGATAAACATTTTATCAGTTAAATTTTTCTTGATATCTTTGATAGGAAGCGAGGTGAATTGGCTCAAAGTTAAAGGTCAAGGGCCCAATCGGGCAAAATCAGCTTGACCAAAGTTTAACAGAAAGTGTCAAAGAAAGTTTTCTTGAAATGTTTATAGAGACAACTAAAATAAACATGTCCTATTCTGGAAACTTTTTTCTTTGAAAATGGGGACTTACATGGGGATCATGTGGTCCCGCCCGTTTCACAACAAAAAAGTAAACATAAATCCACTTTTCACCATTATGCTCCGCCCGTTTTTGTATTATGCTCCGAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTRAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAAAAAATTCGGTGGGGGTCAAAAAATCAAAAATAGTTTTGGTCTGAGAAAAGTTTCTCGGGACAAAGGTTGCTCTCGGTAGACATGTGTAGAAATTGGATGAATAAGGGGGACAAAGGGGAAACGGAAACAGGAGAAAGTTATGAATGAATTGGTGGCTATTGGGGAGAAAGAATGAGAAGGACTACCACTTTTTTGGGAGTGGACGGAAGAGTTTCGAAATGCGACGATGAACTTTAGACTTGAATTTTTATTAGAAACTAAACTTTTTTATTAGGGCATAGGGGATGGGGTTGAAAATTTGAATGCTGTTATTGTCAAATTAATAAAAAACTAACACCTGATGATCTGAAAATCGGCGCTTTTTTGTTCTACAAAAAAGTGTGGCAAAATCGTAATATTTCAGACTTTTGCTTTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAGCTTTCTGATCTAATTTCT</pcr_primer_p1>
		<pcr_primer_p2>CCTTATTCATCCAATTTCTACAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAAAAAATTCGGTGGGGGTCAAAAAATCAAAAATAGTTTTGGTCTGAGAAAAGTTTCTCGGGACAAAGGTTGCTCTCGGTAGACATGTGTAGAAATTGGATGAATAAGG</canonical_amplicon>
		<polymorphic_amplicon>GAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTRAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAAAAAATTCGGTGGGGGTCAAAAAATCAAAAATAGTTTTGGTCTGAGAAAAGTTTCTCGGGACAAAGGTTGCTCTCGGTAGACATGTGTAGAAATTGGATGAATAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33825</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>261087</contig_pos>
        <strand></strand>
        <context>AAAAAAAAAA[A/G]ARagagagag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAA</left_flank>
        <right_flank>AAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTCGCGTAAAACCTCCAATAGAAGAGCATCCACACTGACAAGTTTGAGCTCAATTATCTCGGTTCCTGTCAGAGATAACAAATGTTTGTCAACTGATAAAATTTTTGTGATATTATGATAAACATTTTATCAGTTAAATTTTTCTTGATATCTTTGATAGGAAGCGAGGTGAATTGGCTCAAAGTTAAAGGTCAAGGGCCCAATCGGGCAAAATCAGCTTGACCAAAGTTTAACAGAAAGTGTCAAAGAAAGTTTTCTTGAAATGTTTATAGAGACAACTAAAATAAACATGTCCTATTCTGGAAACTTTTTTCTTTGAAAATGGGGACTTACATGGGGATCATGTGGTCCCGCCCGTTTCACAACAAAAAAGTAAACATAAATCCACTTTTCACCATTATGCTCCGCCCGTTTTTGTATTATGCTCCGAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAAAAAATTCGGTGGGGGTCAAAAAATCAAAAATAGTTTTGGTCTGAGAAAAGTTTCTCGGGACAAAGGTTGCTCTCGGTAGACATGTGTAGAAATTGGATGAATAAGGGGGACAAAGGGGAAACGGAAACAGGAGAAAGTTATGAATGAATTGGTGGCTATTGGGGAGAAAGAATGAGAAGGACTACCACTTTTTTGGGAGTGGACGGAAGAGTTTCGAAATGCGACGATGAACTTTAGACTTGAATTTTTATTAGAAACTAAACTTTTTTATTAGGGCATAGGGGATGGGGTTGAAAATTTGAATGCTGTTATTGTCAAATTAATAAAAAACTAACACCTGATGATCTGAAAATCGGCGCTTTTTTGTTCTACAAAAAAGTGTGGCAAAATCGTAATATTTCAGACTTTTGCTTTGTTTGGACCACTTCC</canonical>
            <polymorphic>AAGTCGCGTAAAACCTCCAATAGAAGAGCATCCACACTGACAAGTTTGAGCTCAATTATCTCGGTTCCTGTCAGAGATAACAAATGTTTGTCAACTGATAAAATTTTTGTGATATTATGATAAACATTTTATCAGTTAAATTTTTCTTGATATCTTTGATAGGAAGCGAGGTGAATTGGCTCAAAGTTAAAGGTCAAGGGCCCAATCGGGCAAAATCAGCTTGACCAAAGTTTAACAGAAAGTGTCAAAGAAAGTTTTCTTGAAATGTTTATAGAGACAACTAAAATAAACATGTCCTATTCTGGAAACTTTTTTCTTTGAAAATGGGGACTTACATGGGGATCATGTGGTCCCGCCCGTTTCACAACAAAAAAGTAAACATAAATCCACTTTTCACCATTATGCTCCGCCCGTTTTTGTATTATGCTCCGAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAARAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAAAAAATTCGGTGGGGGTCAAAAAATCAAAAATAGTTTTGGTCTGAGAAAAGTTTCTCGGGACAAAGGTTGCTCTCGGTAGACATGTGTAGAAATTGGATGAATAAGGGGGACAAAGGGGAAACGGAAACAGGAGAAAGTTATGAATGAATTGGTGGCTATTGGGGAGAAAGAATGAGAAGGACTACCACTTTTTTGGGAGTGGACGGAAGAGTTTCGAAATGCGACGATGAACTTTAGACTTGAATTTTTATTAGAAACTAAACTTTTTTATTAGGGCATAGGGGATGGGGTTGAAAATTTGAATGCTGTTATTGTCAAATTAATAAAAAACTAACACCTGATGATCTGAAAATCGGCGCTTTTTTGTTCTACAAAAAAGTGTGGCAAAATCGTAATATTTCAGACTTTTGCTTTGTTTGGACCACTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAGCTTTCTGATCTAATTTCT</pcr_primer_p1>
		<pcr_primer_p2>CCTTATTCATCCAATTTCTACAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAAAAAATTCGGTGGGGGTCAAAAAATCAAAAATAGTTTTGGTCTGAGAAAAGTTTCTCGGGACAAAGGTTGCTCTCGGTAGACATGTGTAGAAATTGGATGAATAAGG</canonical_amplicon>
		<polymorphic_amplicon>GAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAARAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAAAAAATTCGGTGGGGGTCAAAAAATCAAAAATAGTTTTGGTCTGAGAAAAGTTTCTCGGGACAAAGGTTGCTCTCGGTAGACATGTGTAGAAATTGGATGAATAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33826</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>261089</contig_pos>
        <strand></strand>
        <context>AAAAAAAARA[A/G]agagagagag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAA</left_flank>
        <right_flank>AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCGCGTAAAACCTCCAATAGAAGAGCATCCACACTGACAAGTTTGAGCTCAATTATCTCGGTTCCTGTCAGAGATAACAAATGTTTGTCAACTGATAAAATTTTTGTGATATTATGATAAACATTTTATCAGTTAAATTTTTCTTGATATCTTTGATAGGAAGCGAGGTGAATTGGCTCAAAGTTAAAGGTCAAGGGCCCAATCGGGCAAAATCAGCTTGACCAAAGTTTAACAGAAAGTGTCAAAGAAAGTTTTCTTGAAATGTTTATAGAGACAACTAAAATAAACATGTCCTATTCTGGAAACTTTTTTCTTTGAAAATGGGGACTTACATGGGGATCATGTGGTCCCGCCCGTTTCACAACAAAAAAGTAAACATAAATCCACTTTTCACCATTATGCTCCGCCCGTTTTTGTATTATGCTCCGAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAAAAAATTCGGTGGGGGTCAAAAAATCAAAAATAGTTTTGGTCTGAGAAAAGTTTCTCGGGACAAAGGTTGCTCTCGGTAGACATGTGTAGAAATTGGATGAATAAGGGGGACAAAGGGGAAACGGAAACAGGAGAAAGTTATGAATGAATTGGTGGCTATTGGGGAGAAAGAATGAGAAGGACTACCACTTTTTTGGGAGTGGACGGAAGAGTTTCGAAATGCGACGATGAACTTTAGACTTGAATTTTTATTAGAAACTAAACTTTTTTATTAGGGCATAGGGGATGGGGTTGAAAATTTGAATGCTGTTATTGTCAAATTAATAAAAAACTAACACCTGATGATCTGAAAATCGGCGCTTTTTTGTTCTACAAAAAAGTGTGGCAAAATCGTAATATTTCAGACTTTTGCTTTGTTTGGACCACTTCCAC</canonical>
            <polymorphic>GTCGCGTAAAACCTCCAATAGAAGAGCATCCACACTGACAAGTTTGAGCTCAATTATCTCGGTTCCTGTCAGAGATAACAAATGTTTGTCAACTGATAAAATTTTTGTGATATTATGATAAACATTTTATCAGTTAAATTTTTCTTGATATCTTTGATAGGAAGCGAGGTGAATTGGCTCAAAGTTAAAGGTCAAGGGCCCAATCGGGCAAAATCAGCTTGACCAAAGTTTAACAGAAAGTGTCAAAGAAAGTTTTCTTGAAATGTTTATAGAGACAACTAAAATAAACATGTCCTATTCTGGAAACTTTTTTCTTTGAAAATGGGGACTTACATGGGGATCATGTGGTCCCGCCCGTTTCACAACAAAAAAGTAAACATAAATCCACTTTTCACCATTATGCTCCGCCCGTTTTTGTATTATGCTCCGAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAARAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAAAAAATTCGGTGGGGGTCAAAAAATCAAAAATAGTTTTGGTCTGAGAAAAGTTTCTCGGGACAAAGGTTGCTCTCGGTAGACATGTGTAGAAATTGGATGAATAAGGGGGACAAAGGGGAAACGGAAACAGGAGAAAGTTATGAATGAATTGGTGGCTATTGGGGAGAAAGAATGAGAAGGACTACCACTTTTTTGGGAGTGGACGGAAGAGTTTCGAAATGCGACGATGAACTTTAGACTTGAATTTTTATTAGAAACTAAACTTTTTTATTAGGGCATAGGGGATGGGGTTGAAAATTTGAATGCTGTTATTGTCAAATTAATAAAAAACTAACACCTGATGATCTGAAAATCGGCGCTTTTTTGTTCTACAAAAAAGTGTGGCAAAATCGTAATATTTCAGACTTTTGCTTTGTTTGGACCACTTCCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAGCTTTCTGATCTAATTTCT</pcr_primer_p1>
		<pcr_primer_p2>CCTTATTCATCCAATTTCTACAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAAAAAATTCGGTGGGGGTCAAAAAATCAAAAATAGTTTTGGTCTGAGAAAAGTTTCTCGGGACAAAGGTTGCTCTCGGTAGACATGTGTAGAAATTGGATGAATAAGG</canonical_amplicon>
		<polymorphic_amplicon>GAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAARAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAAAAAATTCGGTGGGGGTCAAAAAATCAAAAATAGTTTTGGTCTGAGAAAAGTTTCTCGGGACAAAGGTTGCTCTCGGTAGACATGTGTAGAAATTGGATGAATAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33827</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>261103</contig_pos>
        <strand></strand>
        <context>gagagagaga[G/A]agagagagag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGAGA</left_flank>
        <right_flank>AGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAATAGAAGAGCATCCACACTGACAAGTTTGAGCTCAATTATCTCGGTTCCTGTCAGAGATAACAAATGTTTGTCAACTGATAAAATTTTTGTGATATTATGATAAACATTTTATCAGTTAAATTTTTCTTGATATCTTTGATAGGAAGCGAGGTGAATTGGCTCAAAGTTAAAGGTCAAGGGCCCAATCGGGCAAAATCAGCTTGACCAAAGTTTAACAGAAAGTGTCAAAGAAAGTTTTCTTGAAATGTTTATAGAGACAACTAAAATAAACATGTCCTATTCTGGAAACTTTTTTCTTTGAAAATGGGGACTTACATGGGGATCATGTGGTCCCGCCCGTTTCACAACAAAAAAGTAAACATAAATCCACTTTTCACCATTATGCTCCGCCCGTTTTTGTATTATGCTCCGAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAAAAAATTCGGTGGGGGTCAAAAAATCAAAAATAGTTTTGGTCTGAGAAAAGTTTCTCGGGACAAAGGTTGCTCTCGGTAGACATGTGTAGAAATTGGATGAATAAGGGGGACAAAGGGGAAACGGAAACAGGAGAAAGTTATGAATGAATTGGTGGCTATTGGGGAGAAAGAATGAGAAGGACTACCACTTTTTTGGGAGTGGACGGAAGAGTTTCGAAATGCGACGATGAACTTTAGACTTGAATTTTTATTAGAAACTAAACTTTTTTATTAGGGCATAGGGGATGGGGTTGAAAATTTGAATGCTGTTATTGTCAAATTAATAAAAAACTAACACCTGATGATCTGAAAATCGGCGCTTTTTTGTTCTACAAAAAAGTGTGGCAAAATCGTAATATTTCAGACTTTTGCTTTGTTTGGACCACTTCCACAATGAAGTTCAGTT</canonical>
            <polymorphic>CCAATAGAAGAGCATCCACACTGACAAGTTTGAGCTCAATTATCTCGGTTCCTGTCAGAGATAACAAATGTTTGTCAACTGATAAAATTTTTGTGATATTATGATAAACATTTTATCAGTTAAATTTTTCTTGATATCTTTGATAGGAAGCGAGGTGAATTGGCTCAAAGTTAAAGGTCAAGGGCCCAATCGGGCAAAATCAGCTTGACCAAAGTTTAACAGAAAGTGTCAAAGAAAGTTTTCTTGAAATGTTTATAGAGACAACTAAAATAAACATGTCCTATTCTGGAAACTTTTTTCTTTGAAAATGGGGACTTACATGGGGATCATGTGGTCCCGCCCGTTTCACAACAAAAAAGTAAACATAAATCCACTTTTCACCATTATGCTCCGCCCGTTTTTGTATTATGCTCCGAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGARAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAAAAAATTCGGTGGGGGTCAAAAAATCAAAAATAGTTTTGGTCTGAGAAAAGTTTCTCGGGACAAAGGTTGCTCTCGGTAGACATGTGTAGAAATTGGATGAATAAGGGGGACAAAGGGGAAACGGAAACAGGAGAAAGTTATGAATGAATTGGTGGCTATTGGGGAGAAAGAATGAGAAGGACTACCACTTTTTTGGGAGTGGACGGAAGAGTTTCGAAATGCGACGATGAACTTTAGACTTGAATTTTTATTAGAAACTAAACTTTTTTATTAGGGCATAGGGGATGGGGTTGAAAATTTGAATGCTGTTATTGTCAAATTAATAAAAAACTAACACCTGATGATCTGAAAATCGGCGCTTTTTTGTTCTACAAAAAAGTGTGGCAAAATCGTAATATTTCAGACTTTTGCTTTGTTTGGACCACTTCCACAATGAAGTTCAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAGCTTTCTGATCTAATTTCT</pcr_primer_p1>
		<pcr_primer_p2>CCTTATTCATCCAATTTCTACAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGARAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAAAAAATTCGGTGGGGGTCAAAAAATCAAAAATAGTTTTGGTCTGAGAAAAGTTTCTCGGGACAAAGGTTGCTCTCGGTAGACATGTGTAGAAATTGGATGAATAAGG</canonical_amplicon>
		<polymorphic_amplicon>GAGAAGCTTTCTGATCTAATTTCTCGGGGAAAAAAGTTTTTTTCACTAAAAGTTTTTGAAAAAAAAAAAAAAAGAGAGAGAGARAGAGAGAGAGAGAGAGAGAGAGACCCATGACTTATTAGGTGCTTAGAAAGTGAAAAAAAAATTCGGTGGGGGTCAAAAAATCAAAAATAGTTTTGGTCTGAGAAAAGTTTCTCGGGACAAAGGTTGCTCTCGGTAGACATGTGTAGAAATTGGATGAATAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33828</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>262294</contig_pos>
        <strand>+</strand>
        <context>CTCTTCTTCT[A/G]AAAAATGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCATGGATCGGAAATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCT</left_flank>
        <right_flank>AAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTACAATATAAAGAATCTGGAAAAATAACTTTTGAGGTGAGATGTTAGTTTGAATCTCAAAATTTAAGGAAAAACGGTTTTTTTTAGTCATCGGAAAAAACTACCGTATTTCCTCTAATGGAACCCCACCCGAACTTTGTACTCAATTATCTCGATTCCTATAAAAGATATCAAAAATGTGTAAACTGATAAAATATTGATCACATTGTCACAAATATTTTATCAGTTAACAAACTTTTGATATCTTACACAGAAATCGATATAATTGAAATACGGTAATTTAAACTTTTAAAAAAATCGAGACATTTTTTAGAAAATTAGAGACTAGAAAAGTCCTAGATCCATCTGCTCATCCCTAAAAAACAGAACAAGAATTGACACCAAAAATGGAAAAGTGGAGAAAAAATATCTGAAAGTGGGACAATGAATCAGGCGGCTCGTTAGTATTCATGGATCGGAAATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCATTGTCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGGGAAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATTTGAGCTCTCGAAAAATATTTTTCTCCATTCGAACTAAAATACGAAATTCGAGAAGGTGATAAGAGAAATATAAGATATCTGGCTGACTAATTTTTGACGCCTGGATTTCCATTTTTTCGTGTTTTGGATTGAGTGTGACGAATGATGTTCTATTTTTTACTGGAGGGAATACAAGGAACATGGTAATGGAGGAATGAAAAAAGAGGGATGAGGCATAGAAAAATTTTTGGATAATAAGATTTTTGGGAAGGATGAATAATAGATAGAGGGAAAGCTGAAAAAGTGGAGTTGAACAAAATGTATT</canonical>
            <polymorphic>ATTCTACAATATAAAGAATCTGGAAAAATAACTTTTGAGGTGAGATGTTAGTTTGAATCTCAAAATTTAAGGAAAAACGGTTTTTTTTAGTCATCGGAAAAAACTACCGTATTTCCTCTAATGGAACCCCACCCGAACTTTGTACTCAATTATCTCGATTCCTATAAAAGATATCAAAAATGTGTAAACTGATAAAATATTGATCACATTGTCACAAATATTTTATCAGTTAACAAACTTTTGATATCTTACACAGAAATCGATATAATTGAAATACGGTAATTTAAACTTTTAAAAAAATCGAGACATTTTTTAGAAAATTAGAGACTAGAAAAGTCCTAGATCCATCTGCTCATCCCTAAAAAACAGAACAAGAATTGACACCAAAAATGGAAAAGTGGAGAAAAAATATCTGAAAGTGGGACAATGAATCAGGCGGCTCGTTAGTATTCATGGATCGGAAATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTRAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCATTGTCAGAAATAGTAACCTATGTATATAAGAAACTTAAATTTTTTTGGGAAAAAAATTAAGATCCTAAAAATGTATTTTTCAAGAAGAAAAGATGTAATTTGAGCTCTCGAAAAATATTTTTCTCCATTCGAACTAAAATACGAAATTCGAGAAGGTGATAAGAGAAATATAAGATATCTGGCTGACTAATTTTTGACGCCTGGATTTCCATTTTTTCGTGTTTTGGATTGAGTGTGACGAATGATGTTCTATTTTTTACTGGAGGGAATACAAGGAACATGGTAATGGAGGAATGAAAAAAGAGGGATGAGGCATAGAAAAATTTTTGGATAATAAGATTTTTGGGAAGGATGAATAATAGATAGAGGGAAAGCTGAAAAAGTGGAGTTGAACAAAATGTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACAGAACAAGAATTGACAC</pcr_primer_p1>
		<pcr_primer_p2>ATGAGTCAGAAAGCTACAATTTC</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>AAAAACAGAACAAGAATTGACACCAAAAATGGAAAAGTGGAGAAAAAATATCTGAAAGTGGGACAATGAATCAGGCGGCTCGTTAGTATTCATGGATCGGAAATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTAAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAACAGAACAAGAATTGACACCAAAAATGGAAAAGTGGAGAAAAAATATCTGAAAGTGGGACAATGAATCAGGCGGCTCGTTAGTATTCATGGATCGGAAATTGTCTGTGCTCCTTCTTATTTTTTCTCTTCTTCTRAAAAATGAAAGAAAAAACGGAAGAGGTGAAGAAGTAGAAGATTAGAAAGAAAAATAGGACTTTTGTATTTTAGGGAAATTGTAGCTTTCTGACTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33829</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>298264</contig_pos>
        <strand>+</strand>
        <context>TCAAGCTGAC[A/G]GATGTGTCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACCTCATTTCAGAACTCAAATGTGCAAAACGAGGAGATATCAAGCTGAC</left_flank>
        <right_flank>GATGTGTCAGCAGTAGAGACCTTATCTCAGAAGAAGCTTCCTGTAAAGTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACTTTGGTGAGTAACGTCATTGTTCTATCCTGATTTTATTCACAATTTCAGAAAATCCACATTGTCCCATTTGAAAAATGCGATGAGACCACTCACCTAGAAGTTCATGCCTGCGACGCCATCTGTCAGTTGAAACAGAAAGTTGCATCGGCGGTCTACAAAGAGACTCCATATTCACAAAGACCGAGAATAACACAGTTTGAGCTCAGTAAGTTCTAAAACACTGTAAAACCTGAAGGGCCACACACTGTCAAGTTTGGGGCAGTATATCTCGGTTTTGGACAATGAGATAAAAAAGTTGTCAACTGGAAAATTGATTACCACAACCTACCAAACATTTTTTTCAGTTGAAACTTTTATTATAACTTGTTTAGGAACCAAGAAAAATCAACTCCAACTTGACAGTGGCAGGGCTCTTCTATTAAAGGTTTTACGGTATCTCAGTTGACCTCATTTCAGAACTCAAATGTGCAAAACGAGGAGATATCAAGCTGACGGATGTGTCAGCAGTAGAGACCTTATCTCAGAAGAAGCTTCCTGTAAAGTTATTGACACTGGCGGATTATGGTATTCAGGATGGTGCAACTCTGGAAATGACATCTGCGGTTTATACAGCGGAAAGTTATAGGAGTGAGTAGCTAAAGCGAATTCCTAGCTAACCTAGTTTTTCAGACTCCCTAGCAGACTCTGGTCAATCGTCATGGTCTTCTTTGGATCGGTGCTCTCCAATCTACTCTTCTTCAAAATACTATCACCTAACGAATCCCTCATCTGGAACTATGACATTTAAGAAGAGAACTTCTCCTTCGGAAATTCCAAAATCAATTCCTGAAGTCTATTTGACACGTCTTCTTACCAGTAAAGGAACCGTAGAAACTTATGTAGAAGACTTCTTGGAATCCGTTCTCTACATGCATGACTCTTCCTATCCACCAATTCTCAAATTCTTTTTTGATATTCTGGATCGAGAAGCTTCCATCAACGGAGTCTCTGAGAA</canonical>
            <polymorphic>AAAACTTTGGTGAGTAACGTCATTGTTCTATCCTGATTTTATTCACAATTTCAGAAAATCCACATTGTCCCATTTGAAAAATGCGATGAGACCACTCACCTAGAAGTTCATGCCTGCGACGCCATCTGTCAGTTGAAACAGAAAGTTGCATCGGCGGTCTACAAAGAGACTCCATATTCACAAAGACCGAGAATAACACAGTTTGAGCTCAGTAAGTTCTAAAACACTGTAAAACCTGAAGGGCCACACACTGTCAAGTTTGGGGCAGTATATCTCGGTTTTGGACAATGAGATAAAAAAGTTGTCAACTGGAAAATTGATTACCACAACCTACCAAACATTTTTTTCAGTTGAAACTTTTATTATAACTTGTTTAGGAACCAAGAAAAATCAACTCCAACTTGACAGTGGCAGGGCTCTTCTATTAAAGGTTTTACGGTATCTCAGTTGACCTCATTTCAGAACTCAAATGTGCAAAACGAGGAGATATCAAGCTGACRGATGTGTCAGCAGTAGAGACCTTATCTCAGAAGAAGCTTCCTGTAAAGTTATTGACACTGGCGGATTATGGTATTCAGGATGGTGCAACTCTGGAAATGACATCTGCGGTTTATACAGCGGAAAGTTATAGGAGTGAGTAGCTAAAGCGAATTCCTAGCTAACCTAGTTTTTCAGACTCCCTAGCAGACTCTGGTCAATCGTCATGGTCTTCTTTGGATCGGTGCTCTCCAATCTACTCTTCTTCAAAATACTATCACCTAACGAATCCCTCATCTGGAACTATGACATTTAAGAAGAGAACTTCTCCTTCGGAAATTCCAAAATCAATTCCTGAAGTCTATTTGACACGTCTTCTTACCAGTAAAGGAACCGTAGAAACTTATGTAGAAGACTTCTTGGAATCCGTTCTCTACATGCATGACTCTTCCTATCCACCAATTCTCAAATTCTTTTTTGATATTCTGGATCGAGAAGCTTCCATCAACGGAGTCTCTGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTGACCTCATTTCAGAACTC</pcr_primer_p1>
		<pcr_primer_p2>TGCTAGGGAGTCTGAAAAACTA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>AGTTGACCTCATTTCAGAACTCAAATGTGCAAAACGAGGAGATATCAAGCTGACGGATGTGTCAGCAGTAGAGACCTTATCTCAGAAGAAGCTTCCTGTAAAGTTATTGACACTGGCGGATTATGGTATTCAGGATGGTGCAACTCTGGAAATGACATCTGCGGTTTATACAGCGGAAAGTTATAGGAGTGAGTAGCTAAAGCGAATTCCTAGCTAACCTAGTTTTTCAGACTCCCTAGCA</canonical_amplicon>
		<polymorphic_amplicon>AGTTGACCTCATTTCAGAACTCAAATGTGCAAAACGAGGAGATATCAAGCTGACRGATGTGTCAGCAGTAGAGACCTTATCTCAGAAGAAGCTTCCTGTAAAGTTATTGACACTGGCGGATTATGGTATTCAGGATGGTGCAACTCTGGAAATGACATCTGCGGTTTATACAGCGGAAAGTTATAGGAGTGAGTAGCTAAAGCGAATTCCTAGCTAACCTAGTTTTTCAGACTCCCTAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33830</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>298367</contig_pos>
        <strand>+</strand>
        <context>GGAAATGACA[C/T]CTGCGGTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGACACTGGCGGATTATGGTATTCAGGATGGTGCAACTCTGGAAATGACA</left_flank>
        <right_flank>CTGCGGTTTATACAGCGGAAAGTTATAGGAGTGAGTAGCTAAAGCGAATT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTCATGCCTGCGACGCCATCTGTCAGTTGAAACAGAAAGTTGCATCGGCGGTCTACAAAGAGACTCCATATTCACAAAGACCGAGAATAACACAGTTTGAGCTCAGTAAGTTCTAAAACACTGTAAAACCTGAAGGGCCACACACTGTCAAGTTTGGGGCAGTATATCTCGGTTTTGGACAATGAGATAAAAAAGTTGTCAACTGGAAAATTGATTACCACAACCTACCAAACATTTTTTTCAGTTGAAACTTTTATTATAACTTGTTTAGGAACCAAGAAAAATCAACTCCAACTTGACAGTGGCAGGGCTCTTCTATTAAAGGTTTTACGGTATCTCAGTTGACCTCATTTCAGAACTCAAATGTGCAAAACGAGGAGATATCAAGCTGACGGATGTGTCAGCAGTAGAGACCTTATCTCAGAAGAAGCTTCCTGTAAAGTTATTGACACTGGCGGATTATGGTATTCAGGATGGTGCAACTCTGGAAATGACATCTGCGGTTTATACAGCGGAAAGTTATAGGAGTGAGTAGCTAAAGCGAATTCCTAGCTAACCTAGTTTTTCAGACTCCCTAGCAGACTCTGGTCAATCGTCATGGTCTTCTTTGGATCGGTGCTCTCCAATCTACTCTTCTTCAAAATACTATCACCTAACGAATCCCTCATCTGGAACTATGACATTTAAGAAGAGAACTTCTCCTTCGGAAATTCCAAAATCAATTCCTGAAGTCTATTTGACACGTCTTCTTACCAGTAAAGGAACCGTAGAAACTTATGTAGAAGACTTCTTGGAATCCGTTCTCTACATGCATGACTCTTCCTATCCACCAATTCTCAAATTCTTTTTTGATATTCTGGATCGAGAAGCTTCCATCAACGGAGTCTCTGAGAATATATGTCAACAATGGAAAGCGAATGGATATGTTTTGAGGATGTGGACGAACTTTGTGAAGAATCCACAACTCGTATTCGATGTTCCACATTCGGTGTCAATG</canonical>
            <polymorphic>AAGTTCATGCCTGCGACGCCATCTGTCAGTTGAAACAGAAAGTTGCATCGGCGGTCTACAAAGAGACTCCATATTCACAAAGACCGAGAATAACACAGTTTGAGCTCAGTAAGTTCTAAAACACTGTAAAACCTGAAGGGCCACACACTGTCAAGTTTGGGGCAGTATATCTCGGTTTTGGACAATGAGATAAAAAAGTTGTCAACTGGAAAATTGATTACCACAACCTACCAAACATTTTTTTCAGTTGAAACTTTTATTATAACTTGTTTAGGAACCAAGAAAAATCAACTCCAACTTGACAGTGGCAGGGCTCTTCTATTAAAGGTTTTACGGTATCTCAGTTGACCTCATTTCAGAACTCAAATGTGCAAAACGAGGAGATATCAAGCTGACGGATGTGTCAGCAGTAGAGACCTTATCTCAGAAGAAGCTTCCTGTAAAGTTATTGACACTGGCGGATTATGGTATTCAGGATGGTGCAACTCTGGAAATGACAYCTGCGGTTTATACAGCGGAAAGTTATAGGAGTGAGTAGCTAAAGCGAATTCCTAGCTAACCTAGTTTTTCAGACTCCCTAGCAGACTCTGGTCAATCGTCATGGTCTTCTTTGGATCGGTGCTCTCCAATCTACTCTTCTTCAAAATACTATCACCTAACGAATCCCTCATCTGGAACTATGACATTTAAGAAGAGAACTTCTCCTTCGGAAATTCCAAAATCAATTCCTGAAGTCTATTTGACACGTCTTCTTACCAGTAAAGGAACCGTAGAAACTTATGTAGAAGACTTCTTGGAATCCGTTCTCTACATGCATGACTCTTCCTATCCACCAATTCTCAAATTCTTTTTTGATATTCTGGATCGAGAAGCTTCCATCAACGGAGTCTCTGAGAATATATGTCAACAATGGAAAGCGAATGGATATGTTTTGAGGATGTGGACGAACTTTGTGAAGAATCCACAACTCGTATTCGATGTTCCACATTCGGTGTCAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTGTCAGCAGTAGAGACCTTA</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAGAAGAGTAGATTGGAGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATGTGTCAGCAGTAGAGACCTTATCTCAGAAGAAGCTTCCTGTAAAGTTATTGACACTGGCGGATTATGGTATTCAGGATGGTGCAACTCTGGAAATGACATCTGCGGTTTATACAGCGGAAAGTTATAGGAGTGAGTAGCTAAAGCGAATTCCTAGCTAACCTAGTTTTTCAGACTCCCTAGCAGACTCTGGTCAATCGTCATGGTCTTCTTTGGATCGGTGCTCTCCAATCTACTCTTCTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>ATGTGTCAGCAGTAGAGACCTTATCTCAGAAGAAGCTTCCTGTAAAGTTATTGACACTGGCGGATTATGGTATTCAGGATGGTGCAACTCTGGAAATGACAYCTGCGGTTTATACAGCGGAAAGTTATAGGAGTGAGTAGCTAAAGCGAATTCCTAGCTAACCTAGTTTTTCAGACTCCCTAGCAGACTCTGGTCAATCGTCATGGTCTTCTTTGGATCGGTGCTCTCCAATCTACTCTTCTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33831</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>298819</contig_pos>
        <strand>+</strand>
        <context>GGACGAACTT[C/T]GTGAAGAATC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTCAACAATGGAAAGCGAATGGATATGTTTTGAGGATGTGGACGAACTT</left_flank>
        <right_flank>GTGAAGAATCCACAACTCGTATTCGATGTTCCACATTCGGTGTCAATGGA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTGGCGGATTATGGTATTCAGGATGGTGCAACTCTGGAAATGACATCTGCGGTTTATACAGCGGAAAGTTATAGGAGTGAGTAGCTAAAGCGAATTCCTAGCTAACCTAGTTTTTCAGACTCCCTAGCAGACTCTGGTCAATCGTCATGGTCTTCTTTGGATCGGTGCTCTCCAATCTACTCTTCTTCAAAATACTATCACCTAACGAATCCCTCATCTGGAACTATGACATTTAAGAAGAGAACTTCTCCTTCGGAAATTCCAAAATCAATTCCTGAAGTCTATTTGACACGTCTTCTTACCAGTAAAGGAACCGTAGAAACTTATGTAGAAGACTTCTTGGAATCCGTTCTCTACATGCATGACTCTTCCTATCCACCAATTCTCAAATTCTTTTTTGATATTCTGGATCGAGAAGCTTCCATCAACGGAGTCTCTGAGAATATATGTCAACAATGGAAAGCGAATGGATATGTTTTGAGGATGTGGACGAACTTTGTGAAGAATCCACAACTCGTATTCGATGTTCCACATTCGGTGTCAATGGATGCGAATCTGAGTACAGTGGCGCAAACGATGGTAGGACTTTTGGGAGTATTCACCTACAGTACTGGTCAATAACTATTTAGTCGTCAATTTTTTTAAAATCTAGATGAATACAGTACCGGACAAATAAGATCTGCAAAATTGTACTCTGTTGATTTTTGGCTATTTTGACCATTTTCAAGAGTCTGAAGCTCGGCTGTCAAGTTTCCGATAACTTTGAATATTTTGAAGGGTGTAAAACATATCTAGATTGAAAACTTTGCATTCACAGAATTTTTAAAAAACTCCTTTTTTAGCCGATTTCAGAAACTCGACCAAAAATAAATTGAAAAATACGTTTTTGTATACCGTAAAACCTGTAATAGAAAAGCCCCTAATTTCCATTTTCGAGCCAATTTTTCTCGTCCCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAACTGTTCATA</canonical>
            <polymorphic>CACTGGCGGATTATGGTATTCAGGATGGTGCAACTCTGGAAATGACATCTGCGGTTTATACAGCGGAAAGTTATAGGAGTGAGTAGCTAAAGCGAATTCCTAGCTAACCTAGTTTTTCAGACTCCCTAGCAGACTCTGGTCAATCGTCATGGTCTTCTTTGGATCGGTGCTCTCCAATCTACTCTTCTTCAAAATACTATCACCTAACGAATCCCTCATCTGGAACTATGACATTTAAGAAGAGAACTTCTCCTTCGGAAATTCCAAAATCAATTCCTGAAGTCTATTTGACACGTCTTCTTACCAGTAAAGGAACCGTAGAAACTTATGTAGAAGACTTCTTGGAATCCGTTCTCTACATGCATGACTCTTCCTATCCACCAATTCTCAAATTCTTTTTTGATATTCTGGATCGAGAAGCTTCCATCAACGGAGTCTCTGAGAATATATGTCAACAATGGAAAGCGAATGGATATGTTTTGAGGATGTGGACGAACTTYGTGAAGAATCCACAACTCGTATTCGATGTTCCACATTCGGTGTCAATGGATGCGAATCTGAGTACAGTGGCGCAAACGATGGTAGGACTTTTGGGAGTATTCACCTACAGTACTGGTCAATAACTATTTAGTCGTCAATTTTTTTAAAATCTAGATGAATACAGTACCGGACAAATAAGATCTGCAAAATTGTACTCTGTTGATTTTTGGCTATTTTGACCATTTTCAAGAGTCTGAAGCTCGGCTGTCAAGTTTCCGATAACTTTGAATATTTTGAAGGGTGTAAAACATATCTAGATTGAAAACTTTGCATTCACAGAATTTTTAAAAAACTCCTTTTTTAGCCGATTTCAGAAACTCGACCAAAAATAAATTGAAAAATACGTTTTTGTATACCGTAAAACCTGTAATAGAAAAGCCCCTAATTTCCATTTTCGAGCCAATTTTTCTCGTCCCCTGTCAAAGATATAAACAAGTTGTCAACTGATAAACTGTTCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTACATGCATGACTCTTCCTAT</pcr_primer_p1>
		<pcr_primer_p2>GTGAATACTCCCAAAAGTCCTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTACATGCATGACTCTTCCTATCCACCAATTCTCAAATTCTTTTTTGATATTCTGGATCGAGAAGCTTCCATCAACGGAGTCTCTGAGAATATATGTCAACAATGGAAAGCGAATGGATATGTTTTGAGGATGTGGACGAACTTTGTGAAGAATCCACAACTCGTATTCGATGTTCCACATTCGGTGTCAATGGATGCGAATCTGAGTACAGTGGCGCAAACGATGGTAGGACTTTTGGGAGTATTCAC</canonical_amplicon>
		<polymorphic_amplicon>TCTACATGCATGACTCTTCCTATCCACCAATTCTCAAATTCTTTTTTGATATTCTGGATCGAGAAGCTTCCATCAACGGAGTCTCTGAGAATATATGTCAACAATGGAAAGCGAATGGATATGTTTTGAGGATGTGGACGAACTTYGTGAAGAATCCACAACTCGTATTCGATGTTCCACATTCGGTGTCAATGGATGCGAATCTGAGTACAGTGGCGCAAACGATGGTAGGACTTTTGGGAGTATTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33832</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>300756</contig_pos>
        <strand></strand>
        <context>ccggtaaaaa[G/T]cattttccct</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATCAGACTGCGAACAATGGGGTTTTTGGTTGGTTTTTCCCCGGTAAAAA</left_flank>
        <right_flank>CATTTTCCCTTTCTATGTACTGAGCCTTTACGTGGCGAGAGGGACCAACA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATGTGCTTAAGTTAGAGCTCGATTGCTGTGAAAGATATCAAAAAAGTGTCAACTGATAAATTTTTTTTTGTAATGATAAGCAATTTATCTGTTGACACTTTCAAACTTTCGGATATTTTTCACAGGAACCCAGAAAAACTTTCTAAAAATCAAAAGTTACGGGTGCCCTTGTATTACAGGTTTTACGGTGTTAAATTTTCATCTGACGACGATAACAATACCTACAACGTTTGAAAAGGGGGCGGAGTTTCCCATGGGAAAGACTAGGCCAGGTGTGCTAAGGCCCGCCCCCTTTTCTCCCAATACGGGCTAAAAAAATTCAGTTTAAGTGTTCGAGGTTTGGGAGGCATGCTTGCGTGGGCAATGGGCTGGTGGTCTAGTCGGTCAGTGTTCCACGGTTCACTGGAAGGCAGCATCACTAGAACAGGGCTCGCCACTCATGCTGAGGATCAGACTGCGAACAATGGGGTTTTTGGTTGGTTTTTCCCCGGTAAAAAGCATTTTCCCTTTCTATGTACTGAGCCTTTACGTGGCGAGAGGGACCAACAGACTACATTTGTCTGGCTAATCCAGTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGATCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTGTTCGCTTAACAACCAATCATGAAAATTGGAATTTGTCTGGAATTCATACCTTTGCGCAAACAGCAGATTGAGCCTGAAATTTTGAGTCAAATCTTTAAATTGAACTTAGAACGTTTTAATAAAAAATTCAAATAAATTCAAATAAAATAATCTATTTAAAAACCTCTAAAAAGCCTGATAGGGTATTATTGAAACCAGCCGGCCTGATTTCCTGGGGATGGAAATAAAAGTCTGAAAAAAAAATCTGGAACCTTCTGGAAGTGCCTAGAGCCTTATCTTTAGAAAACGGCTAGAACGGTTGAAAACATGCTAGATACGTTCTGGA</canonical>
            <polymorphic>GTATGTGCTTAAGTTAGAGCTCGATTGCTGTGAAAGATATCAAAAAAGTGTCAACTGATAAATTTTTTTTTGTAATGATAAGCAATTTATCTGTTGACACTTTCAAACTTTCGGATATTTTTCACAGGAACCCAGAAAAACTTTCTAAAAATCAAAAGTTACGGGTGCCCTTGTATTACAGGTTTTACGGTGTTAAATTTTCATCTGACGACGATAACAATACCTACAACGTTTGAAAAGGGGGCGGAGTTTCCCATGGGAAAGACTAGGCCAGGTGTGCTAAGGCCCGCCCCCTTTTCTCCCAATACGGGCTAAAAAAATTCAGTTTAAGTGTTCGAGGTTTGGGAGGCATGCTTGCGTGGGCAATGGGCTGGTGGTCTAGTCGGTCAGTGTTCCACGGTTCACTGGAAGGCAGCATCACTAGAACAGGGCTCGCCACTCATGCTGAGGATCAGACTGCGAACAATGGGGTTTTTGGTTGGTTTTTCCCCGGTAAAAAKCATTTTCCCTTTCTATGTACTGAGCCTTTACGTGGCGAGAGGGACCAACAGACTACATTTGTCTGGCTAATCCAGTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGATCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTGTTCGCTTAACAACCAATCATGAAAATTGGAATTTGTCTGGAATTCATACCTTTGCGCAAACAGCAGATTGAGCCTGAAATTTTGAGTCAAATCTTTAAATTGAACTTAGAACGTTTTAATAAAAAATTCAAATAAATTCAAATAAAATAATCTATTTAAAAACCTCTAAAAAGCCTGATAGGGTATTATTGAAACCAGCCGGCCTGATTTCCTGGGGATGGAAATAAAAGTCTGAAAAAAAAATCTGGAACCTTCTGGAAGTGCCTAGAGCCTTATCTTTAGAAAACGGCTAGAACGGTTGAAAACATGCTAGATACGTTCTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAAAGTATGTGCTTAAGTTAGA</pcr_primer_p1>
		<pcr_primer_p2>CAGGAAGCAGAGGAAGTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>682</pcr_amplicon_size>
		<canonical_amplicon>AGCATTTTCCCTTTCTATGTACTGAGCCTTTACGTGGCGAGAGGGACCAACAGACTACATTTGTCTGGCTAATCCAGTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGATCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTG</canonical_amplicon>
		<polymorphic_amplicon>AKCATTTTCCCTTTCTATGTACTGAGCCTTTACGTGGCGAGAGGGACCAACAGACTACATTTGTCTGGCTAATCCAGTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGATCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33833</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>300784</contig_pos>
        <strand></strand>
        <context>tactgagcct[T/C]tacgyggcga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTTGGTTTTTCCCCGGTAAAAAGCATTTTCCCTTTCTATGTACTGAGCCT</left_flank>
        <right_flank>TACGTGGCGAGAGGGACCAACAGACTACATTTGTCTGGCTAATCCAGTAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGAAAGATATCAAAAAAGTGTCAACTGATAAATTTTTTTTTGTAATGATAAGCAATTTATCTGTTGACACTTTCAAACTTTCGGATATTTTTCACAGGAACCCAGAAAAACTTTCTAAAAATCAAAAGTTACGGGTGCCCTTGTATTACAGGTTTTACGGTGTTAAATTTTCATCTGACGACGATAACAATACCTACAACGTTTGAAAAGGGGGCGGAGTTTCCCATGGGAAAGACTAGGCCAGGTGTGCTAAGGCCCGCCCCCTTTTCTCCCAATACGGGCTAAAAAAATTCAGTTTAAGTGTTCGAGGTTTGGGAGGCATGCTTGCGTGGGCAATGGGCTGGTGGTCTAGTCGGTCAGTGTTCCACGGTTCACTGGAAGGCAGCATCACTAGAACAGGGCTCGCCACTCATGCTGAGGATCAGACTGCGAACAATGGGGTTTTTGGTTGGTTTTTCCCCGGTAAAAAGCATTTTCCCTTTCTATGTACTGAGCCTTTACGTGGCGAGAGGGACCAACAGACTACATTTGTCTGGCTAATCCAGTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGATCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTGTTCGCTTAACAACCAATCATGAAAATTGGAATTTGTCTGGAATTCATACCTTTGCGCAAACAGCAGATTGAGCCTGAAATTTTGAGTCAAATCTTTAAATTGAACTTAGAACGTTTTAATAAAAAATTCAAATAAATTCAAATAAAATAATCTATTTAAAAACCTCTAAAAAGCCTGATAGGGTATTATTGAAACCAGCCGGCCTGATTTCCTGGGGATGGAAATAAAAGTCTGAAAAAAAAATCTGGAACCTTCTGGAAGTGCCTAGAGCCTTATCTTTAGAAAACGGCTAGAACGGTTGAAAACATGCTAGATACGTTCTGGAACCTTCTAGAAGGCTCTAACACCTTCTA</canonical>
            <polymorphic>TGTGAAAGATATCAAAAAAGTGTCAACTGATAAATTTTTTTTTGTAATGATAAGCAATTTATCTGTTGACACTTTCAAACTTTCGGATATTTTTCACAGGAACCCAGAAAAACTTTCTAAAAATCAAAAGTTACGGGTGCCCTTGTATTACAGGTTTTACGGTGTTAAATTTTCATCTGACGACGATAACAATACCTACAACGTTTGAAAAGGGGGCGGAGTTTCCCATGGGAAAGACTAGGCCAGGTGTGCTAAGGCCCGCCCCCTTTTCTCCCAATACGGGCTAAAAAAATTCAGTTTAAGTGTTCGAGGTTTGGGAGGCATGCTTGCGTGGGCAATGGGCTGGTGGTCTAGTCGGTCAGTGTTCCACGGTTCACTGGAAGGCAGCATCACTAGAACAGGGCTCGCCACTCATGCTGAGGATCAGACTGCGAACAATGGGGTTTTTGGTTGGTTTTTCCCCGGTAAAAAGCATTTTCCCTTTCTATGTACTGAGCCTYTACGTGGCGAGAGGGACCAACAGACTACATTTGTCTGGCTAATCCAGTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGATCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTGTTCGCTTAACAACCAATCATGAAAATTGGAATTTGTCTGGAATTCATACCTTTGCGCAAACAGCAGATTGAGCCTGAAATTTTGAGTCAAATCTTTAAATTGAACTTAGAACGTTTTAATAAAAAATTCAAATAAATTCAAATAAAATAATCTATTTAAAAACCTCTAAAAAGCCTGATAGGGTATTATTGAAACCAGCCGGCCTGATTTCCTGGGGATGGAAATAAAAGTCTGAAAAAAAAATCTGGAACCTTCTGGAAGTGCCTAGAGCCTTATCTTTAGAAAACGGCTAGAACGGTTGAAAACATGCTAGATACGTTCTGGAACCTTCTAGAAGGCTCTAACACCTTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAAAGTATGTGCTTAAGTTAGA</pcr_primer_p1>
		<pcr_primer_p2>CAGGAAGCAGAGGAAGTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>682</pcr_amplicon_size>
		<canonical_amplicon>TTTACGTGGCGAGAGGGACCAACAGACTACATTTGTCTGGCTAATCCAGTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGATCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTG</canonical_amplicon>
		<polymorphic_amplicon>TYTACGTGGCGAGAGGGACCAACAGACTACATTTGTCTGGCTAATCCAGTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGATCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33834</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>300789</contig_pos>
        <strand></strand>
        <context>agcctytacg[T/C]ggcgaraggg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTTCCCCGGTAAAAAGCATTTTCCCTTTCTATGTACTGAGCCTTTACG</left_flank>
        <right_flank>GGCGAGAGGGACCAACAGACTACATTTGTCTGGCTAATCCAGTACACAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGATATCAAAAAAGTGTCAACTGATAAATTTTTTTTTGTAATGATAAGCAATTTATCTGTTGACACTTTCAAACTTTCGGATATTTTTCACAGGAACCCAGAAAAACTTTCTAAAAATCAAAAGTTACGGGTGCCCTTGTATTACAGGTTTTACGGTGTTAAATTTTCATCTGACGACGATAACAATACCTACAACGTTTGAAAAGGGGGCGGAGTTTCCCATGGGAAAGACTAGGCCAGGTGTGCTAAGGCCCGCCCCCTTTTCTCCCAATACGGGCTAAAAAAATTCAGTTTAAGTGTTCGAGGTTTGGGAGGCATGCTTGCGTGGGCAATGGGCTGGTGGTCTAGTCGGTCAGTGTTCCACGGTTCACTGGAAGGCAGCATCACTAGAACAGGGCTCGCCACTCATGCTGAGGATCAGACTGCGAACAATGGGGTTTTTGGTTGGTTTTTCCCCGGTAAAAAGCATTTTCCCTTTCTATGTACTGAGCCTTTACGTGGCGAGAGGGACCAACAGACTACATTTGTCTGGCTAATCCAGTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGATCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTGTTCGCTTAACAACCAATCATGAAAATTGGAATTTGTCTGGAATTCATACCTTTGCGCAAACAGCAGATTGAGCCTGAAATTTTGAGTCAAATCTTTAAATTGAACTTAGAACGTTTTAATAAAAAATTCAAATAAATTCAAATAAAATAATCTATTTAAAAACCTCTAAAAAGCCTGATAGGGTATTATTGAAACCAGCCGGCCTGATTTCCTGGGGATGGAAATAAAAGTCTGAAAAAAAAATCTGGAACCTTCTGGAAGTGCCTAGAGCCTTATCTTTAGAAAACGGCTAGAACGGTTGAAAACATGCTAGATACGTTCTGGAACCTTCTAGAAGGCTCTAACACCTTCTAGAATC</canonical>
            <polymorphic>AAGATATCAAAAAAGTGTCAACTGATAAATTTTTTTTTGTAATGATAAGCAATTTATCTGTTGACACTTTCAAACTTTCGGATATTTTTCACAGGAACCCAGAAAAACTTTCTAAAAATCAAAAGTTACGGGTGCCCTTGTATTACAGGTTTTACGGTGTTAAATTTTCATCTGACGACGATAACAATACCTACAACGTTTGAAAAGGGGGCGGAGTTTCCCATGGGAAAGACTAGGCCAGGTGTGCTAAGGCCCGCCCCCTTTTCTCCCAATACGGGCTAAAAAAATTCAGTTTAAGTGTTCGAGGTTTGGGAGGCATGCTTGCGTGGGCAATGGGCTGGTGGTCTAGTCGGTCAGTGTTCCACGGTTCACTGGAAGGCAGCATCACTAGAACAGGGCTCGCCACTCATGCTGAGGATCAGACTGCGAACAATGGGGTTTTTGGTTGGTTTTTCCCCGGTAAAAAGCATTTTCCCTTTCTATGTACTGAGCCTTTACGYGGCGAGAGGGACCAACAGACTACATTTGTCTGGCTAATCCAGTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGATCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTGTTCGCTTAACAACCAATCATGAAAATTGGAATTTGTCTGGAATTCATACCTTTGCGCAAACAGCAGATTGAGCCTGAAATTTTGAGTCAAATCTTTAAATTGAACTTAGAACGTTTTAATAAAAAATTCAAATAAATTCAAATAAAATAATCTATTTAAAAACCTCTAAAAAGCCTGATAGGGTATTATTGAAACCAGCCGGCCTGATTTCCTGGGGATGGAAATAAAAGTCTGAAAAAAAAATCTGGAACCTTCTGGAAGTGCCTAGAGCCTTATCTTTAGAAAACGGCTAGAACGGTTGAAAACATGCTAGATACGTTCTGGAACCTTCTAGAAGGCTCTAACACCTTCTAGAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>359 96 85 83 54 49 45 43 28 25 25 18 17 16 16 15 12 7 5 2</canonical_bands>
                <polymorphic_bands>359 141 85 83 54 49 43 28 25 25 18 17 16 16 15 12 7 5 2</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>301 256 205 196 42</canonical_bands>
                <polymorphic_bands>557 205 196 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAAAAGTATGTGCTTAAGTTAGA</pcr_primer_p1>
		<pcr_primer_p2>CAGGAAGCAGAGGAAGTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>682</pcr_amplicon_size>
		<canonical_amplicon>GTGGCGAGAGGGACCAACAGACTACATTTGTCTGGCTAATCCAGTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGATCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTG</canonical_amplicon>
		<polymorphic_amplicon>GYGGCGAGAGGGACCAACAGACTACATTTGTCTGGCTAATCCAGTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGATCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33835</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>300795</contig_pos>
        <strand></strand>
        <context>tacgyggcga[G/A]agggaycaac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CCCGGTAAAAAGCATTTTCCCTTTCTATGTACTGAGCCTTTACGTGGCGA</left_flank>
        <right_flank>AGGGACCAACAGACTACATTTGTCTGGCTAATCCAGTACACAAAATCTGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAAAAGTGTCAACTGATAAATTTTTTTTTGTAATGATAAGCAATTTATCTGTTGACACTTTCAAACTTTCGGATATTTTTCACAGGAACCCAGAAAAACTTTCTAAAAATCAAAAGTTACGGGTGCCCTTGTATTACAGGTTTTACGGTGTTAAATTTTCATCTGACGACGATAACAATACCTACAACGTTTGAAAAGGGGGCGGAGTTTCCCATGGGAAAGACTAGGCCAGGTGTGCTAAGGCCCGCCCCCTTTTCTCCCAATACGGGCTAAAAAAATTCAGTTTAAGTGTTCGAGGTTTGGGAGGCATGCTTGCGTGGGCAATGGGCTGGTGGTCTAGTCGGTCAGTGTTCCACGGTTCACTGGAAGGCAGCATCACTAGAACAGGGCTCGCCACTCATGCTGAGGATCAGACTGCGAACAATGGGGTTTTTGGTTGGTTTTTCCCCGGTAAAAAGCATTTTCCCTTTCTATGTACTGAGCCTTTACGTGGCGAGAGGGACCAACAGACTACATTTGTCTGGCTAATCCAGTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGATCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTGTTCGCTTAACAACCAATCATGAAAATTGGAATTTGTCTGGAATTCATACCTTTGCGCAAACAGCAGATTGAGCCTGAAATTTTGAGTCAAATCTTTAAATTGAACTTAGAACGTTTTAATAAAAAATTCAAATAAATTCAAATAAAATAATCTATTTAAAAACCTCTAAAAAGCCTGATAGGGTATTATTGAAACCAGCCGGCCTGATTTCCTGGGGATGGAAATAAAAGTCTGAAAAAAAAATCTGGAACCTTCTGGAAGTGCCTAGAGCCTTATCTTTAGAAAACGGCTAGAACGGTTGAAAACATGCTAGATACGTTCTGGAACCTTCTAGAAGGCTCTAACACCTTCTAGAATCTTCAGA</canonical>
            <polymorphic>TCAAAAAAGTGTCAACTGATAAATTTTTTTTTGTAATGATAAGCAATTTATCTGTTGACACTTTCAAACTTTCGGATATTTTTCACAGGAACCCAGAAAAACTTTCTAAAAATCAAAAGTTACGGGTGCCCTTGTATTACAGGTTTTACGGTGTTAAATTTTCATCTGACGACGATAACAATACCTACAACGTTTGAAAAGGGGGCGGAGTTTCCCATGGGAAAGACTAGGCCAGGTGTGCTAAGGCCCGCCCCCTTTTCTCCCAATACGGGCTAAAAAAATTCAGTTTAAGTGTTCGAGGTTTGGGAGGCATGCTTGCGTGGGCAATGGGCTGGTGGTCTAGTCGGTCAGTGTTCCACGGTTCACTGGAAGGCAGCATCACTAGAACAGGGCTCGCCACTCATGCTGAGGATCAGACTGCGAACAATGGGGTTTTTGGTTGGTTTTTCCCCGGTAAAAAGCATTTTCCCTTTCTATGTACTGAGCCTTTACGTGGCGARAGGGACCAACAGACTACATTTGTCTGGCTAATCCAGTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGATCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTGTTCGCTTAACAACCAATCATGAAAATTGGAATTTGTCTGGAATTCATACCTTTGCGCAAACAGCAGATTGAGCCTGAAATTTTGAGTCAAATCTTTAAATTGAACTTAGAACGTTTTAATAAAAAATTCAAATAAATTCAAATAAAATAATCTATTTAAAAACCTCTAAAAAGCCTGATAGGGTATTATTGAAACCAGCCGGCCTGATTTCCTGGGGATGGAAATAAAAGTCTGAAAAAAAAATCTGGAACCTTCTGGAAGTGCCTAGAGCCTTATCTTTAGAAAACGGCTAGAACGGTTGAAAACATGCTAGATACGTTCTGGAACCTTCTAGAAGGCTCTAACACCTTCTAGAATCTTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAAAGTATGTGCTTAAGTTAGA</pcr_primer_p1>
		<pcr_primer_p2>CAGGAAGCAGAGGAAGTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>682</pcr_amplicon_size>
		<canonical_amplicon>AGAGGGACCAACAGACTACATTTGTCTGGCTAATCCAGTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGATCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTG</canonical_amplicon>
		<polymorphic_amplicon>ARAGGGACCAACAGACTACATTTGTCTGGCTAATCCAGTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGATCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33836</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>300801</contig_pos>
        <strand></strand>
        <context>gcgaraggga[C/T]caacagacta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAGCATTTTCCCTTTCTATGTACTGAGCCTTTACGTGGCGAGAGGGA</left_flank>
        <right_flank>CAACAGACTACATTTGTCTGGCTAATCCAGTACACAAAATCTGAAGAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTGTCAACTGATAAATTTTTTTTTGTAATGATAAGCAATTTATCTGTTGACACTTTCAAACTTTCGGATATTTTTCACAGGAACCCAGAAAAACTTTCTAAAAATCAAAAGTTACGGGTGCCCTTGTATTACAGGTTTTACGGTGTTAAATTTTCATCTGACGACGATAACAATACCTACAACGTTTGAAAAGGGGGCGGAGTTTCCCATGGGAAAGACTAGGCCAGGTGTGCTAAGGCCCGCCCCCTTTTCTCCCAATACGGGCTAAAAAAATTCAGTTTAAGTGTTCGAGGTTTGGGAGGCATGCTTGCGTGGGCAATGGGCTGGTGGTCTAGTCGGTCAGTGTTCCACGGTTCACTGGAAGGCAGCATCACTAGAACAGGGCTCGCCACTCATGCTGAGGATCAGACTGCGAACAATGGGGTTTTTGGTTGGTTTTTCCCCGGTAAAAAGCATTTTCCCTTTCTATGTACTGAGCCTTTACGTGGCGAGAGGGACCAACAGACTACATTTGTCTGGCTAATCCAGTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGATCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTGTTCGCTTAACAACCAATCATGAAAATTGGAATTTGTCTGGAATTCATACCTTTGCGCAAACAGCAGATTGAGCCTGAAATTTTGAGTCAAATCTTTAAATTGAACTTAGAACGTTTTAATAAAAAATTCAAATAAATTCAAATAAAATAATCTATTTAAAAACCTCTAAAAAGCCTGATAGGGTATTATTGAAACCAGCCGGCCTGATTTCCTGGGGATGGAAATAAAAGTCTGAAAAAAAAATCTGGAACCTTCTGGAAGTGCCTAGAGCCTTATCTTTAGAAAACGGCTAGAACGGTTGAAAACATGCTAGATACGTTCTGGAACCTTCTAGAAGGCTCTAACACCTTCTAGAATCTTCAGAAGACGT</canonical>
            <polymorphic>AAGTGTCAACTGATAAATTTTTTTTTGTAATGATAAGCAATTTATCTGTTGACACTTTCAAACTTTCGGATATTTTTCACAGGAACCCAGAAAAACTTTCTAAAAATCAAAAGTTACGGGTGCCCTTGTATTACAGGTTTTACGGTGTTAAATTTTCATCTGACGACGATAACAATACCTACAACGTTTGAAAAGGGGGCGGAGTTTCCCATGGGAAAGACTAGGCCAGGTGTGCTAAGGCCCGCCCCCTTTTCTCCCAATACGGGCTAAAAAAATTCAGTTTAAGTGTTCGAGGTTTGGGAGGCATGCTTGCGTGGGCAATGGGCTGGTGGTCTAGTCGGTCAGTGTTCCACGGTTCACTGGAAGGCAGCATCACTAGAACAGGGCTCGCCACTCATGCTGAGGATCAGACTGCGAACAATGGGGTTTTTGGTTGGTTTTTCCCCGGTAAAAAGCATTTTCCCTTTCTATGTACTGAGCCTTTACGTGGCGAGAGGGAYCAACAGACTACATTTGTCTGGCTAATCCAGTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGATCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTGTTCGCTTAACAACCAATCATGAAAATTGGAATTTGTCTGGAATTCATACCTTTGCGCAAACAGCAGATTGAGCCTGAAATTTTGAGTCAAATCTTTAAATTGAACTTAGAACGTTTTAATAAAAAATTCAAATAAATTCAAATAAAATAATCTATTTAAAAACCTCTAAAAAGCCTGATAGGGTATTATTGAAACCAGCCGGCCTGATTTCCTGGGGATGGAAATAAAAGTCTGAAAAAAAAATCTGGAACCTTCTGGAAGTGCCTAGAGCCTTATCTTTAGAAAACGGCTAGAACGGTTGAAAACATGCTAGATACGTTCTGGAACCTTCTAGAAGGCTCTAACACCTTCTAGAATCTTCAGAAGACGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>497 415 88</canonical_bands>
                <polymorphic_bands>585 415</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>415 258 239 88</canonical_bands>
                <polymorphic_bands>415 346 239</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>381 377 84 76 45 37</canonical_bands>
                <polymorphic_bands>758 84 76 45 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAAAAGTATGTGCTTAAGTTAGA</pcr_primer_p1>
		<pcr_primer_p2>CAGGAAGCAGAGGAAGTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>682</pcr_amplicon_size>
		<canonical_amplicon>ACCAACAGACTACATTTGTCTGGCTAATCCAGTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGATCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTG</canonical_amplicon>
		<polymorphic_amplicon>AYCAACAGACTACATTTGTCTGGCTAATCCAGTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGATCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33837</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>300831</contig_pos>
        <strand></strand>
        <context>ggctaatcca[G/A]tacacaaaat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CCTTTACGTGGCGAGAGGGACCAACAGACTACATTTGTCTGGCTAATCCA</left_flank>
        <right_flank>TACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATAAGCAATTTATCTGTTGACACTTTCAAACTTTCGGATATTTTTCACAGGAACCCAGAAAAACTTTCTAAAAATCAAAAGTTACGGGTGCCCTTGTATTACAGGTTTTACGGTGTTAAATTTTCATCTGACGACGATAACAATACCTACAACGTTTGAAAAGGGGGCGGAGTTTCCCATGGGAAAGACTAGGCCAGGTGTGCTAAGGCCCGCCCCCTTTTCTCCCAATACGGGCTAAAAAAATTCAGTTTAAGTGTTCGAGGTTTGGGAGGCATGCTTGCGTGGGCAATGGGCTGGTGGTCTAGTCGGTCAGTGTTCCACGGTTCACTGGAAGGCAGCATCACTAGAACAGGGCTCGCCACTCATGCTGAGGATCAGACTGCGAACAATGGGGTTTTTGGTTGGTTTTTCCCCGGTAAAAAGCATTTTCCCTTTCTATGTACTGAGCCTTTACGTGGCGAGAGGGACCAACAGACTACATTTGTCTGGCTAATCCAGTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGATCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTGTTCGCTTAACAACCAATCATGAAAATTGGAATTTGTCTGGAATTCATACCTTTGCGCAAACAGCAGATTGAGCCTGAAATTTTGAGTCAAATCTTTAAATTGAACTTAGAACGTTTTAATAAAAAATTCAAATAAATTCAAATAAAATAATCTATTTAAAAACCTCTAAAAAGCCTGATAGGGTATTATTGAAACCAGCCGGCCTGATTTCCTGGGGATGGAAATAAAAGTCTGAAAAAAAAATCTGGAACCTTCTGGAAGTGCCTAGAGCCTTATCTTTAGAAAACGGCTAGAACGGTTGAAAACATGCTAGATACGTTCTGGAACCTTCTAGAAGGCTCTAACACCTTCTAGAATCTTCAGAAGACGTCTAGAATATTCTGAAAAAAACTGAACTGAT</canonical>
            <polymorphic>TGATAAGCAATTTATCTGTTGACACTTTCAAACTTTCGGATATTTTTCACAGGAACCCAGAAAAACTTTCTAAAAATCAAAAGTTACGGGTGCCCTTGTATTACAGGTTTTACGGTGTTAAATTTTCATCTGACGACGATAACAATACCTACAACGTTTGAAAAGGGGGCGGAGTTTCCCATGGGAAAGACTAGGCCAGGTGTGCTAAGGCCCGCCCCCTTTTCTCCCAATACGGGCTAAAAAAATTCAGTTTAAGTGTTCGAGGTTTGGGAGGCATGCTTGCGTGGGCAATGGGCTGGTGGTCTAGTCGGTCAGTGTTCCACGGTTCACTGGAAGGCAGCATCACTAGAACAGGGCTCGCCACTCATGCTGAGGATCAGACTGCGAACAATGGGGTTTTTGGTTGGTTTTTCCCCGGTAAAAAGCATTTTCCCTTTCTATGTACTGAGCCTTTACGTGGCGAGAGGGACCAACAGACTACATTTGTCTGGCTAATCCARTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGATCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTGTTCGCTTAACAACCAATCATGAAAATTGGAATTTGTCTGGAATTCATACCTTTGCGCAAACAGCAGATTGAGCCTGAAATTTTGAGTCAAATCTTTAAATTGAACTTAGAACGTTTTAATAAAAAATTCAAATAAATTCAAATAAAATAATCTATTTAAAAACCTCTAAAAAGCCTGATAGGGTATTATTGAAACCAGCCGGCCTGATTTCCTGGGGATGGAAATAAAAGTCTGAAAAAAAAATCTGGAACCTTCTGGAAGTGCCTAGAGCCTTATCTTTAGAAAACGGCTAGAACGGTTGAAAACATGCTAGATACGTTCTGGAACCTTCTAGAAGGCTCTAACACCTTCTAGAATCTTCAGAAGACGTCTAGAATATTCTGAAAAAAACTGAACTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 443 58</canonical_bands>
                <polymorphic_bands>557 443</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 307 175 20</canonical_bands>
                <polymorphic_bands>673 307 20</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>501 441 58</canonical_bands>
                <polymorphic_bands>559 441</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAAAAGTATGTGCTTAAGTTAGA</pcr_primer_p1>
		<pcr_primer_p2>CAGGAAGCAGAGGAAGTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>682</pcr_amplicon_size>
		<canonical_amplicon>AGTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGATCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTG</canonical_amplicon>
		<polymorphic_amplicon>ARTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGATCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33838</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>300881</contig_pos>
        <strand></strand>
        <context>CTTATTTCAG[A/C]TCATGGTCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAG</left_flank>
        <right_flank>TCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAACCCAGAAAAACTTTCTAAAAATCAAAAGTTACGGGTGCCCTTGTATTACAGGTTTTACGGTGTTAAATTTTCATCTGACGACGATAACAATACCTACAACGTTTGAAAAGGGGGCGGAGTTTCCCATGGGAAAGACTAGGCCAGGTGTGCTAAGGCCCGCCCCCTTTTCTCCCAATACGGGCTAAAAAAATTCAGTTTAAGTGTTCGAGGTTTGGGAGGCATGCTTGCGTGGGCAATGGGCTGGTGGTCTAGTCGGTCAGTGTTCCACGGTTCACTGGAAGGCAGCATCACTAGAACAGGGCTCGCCACTCATGCTGAGGATCAGACTGCGAACAATGGGGTTTTTGGTTGGTTTTTCCCCGGTAAAAAGCATTTTCCCTTTCTATGTACTGAGCCTTTACGTGGCGAGAGGGACCAACAGACTACATTTGTCTGGCTAATCCAGTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGATCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTGTTCGCTTAACAACCAATCATGAAAATTGGAATTTGTCTGGAATTCATACCTTTGCGCAAACAGCAGATTGAGCCTGAAATTTTGAGTCAAATCTTTAAATTGAACTTAGAACGTTTTAATAAAAAATTCAAATAAATTCAAATAAAATAATCTATTTAAAAACCTCTAAAAAGCCTGATAGGGTATTATTGAAACCAGCCGGCCTGATTTCCTGGGGATGGAAATAAAAGTCTGAAAAAAAAATCTGGAACCTTCTGGAAGTGCCTAGAGCCTTATCTTTAGAAAACGGCTAGAACGGTTGAAAACATGCTAGATACGTTCTGGAACCTTCTAGAAGGCTCTAACACCTTCTAGAATCTTCAGAAGACGTCTAGAATATTCTGAAAAAAACTGAACTGATTCTTGAATGTGATTGTTACTGTCGTCGCCCTGAAAAAATAACTTTTCTAA</canonical>
            <polymorphic>AGGAACCCAGAAAAACTTTCTAAAAATCAAAAGTTACGGGTGCCCTTGTATTACAGGTTTTACGGTGTTAAATTTTCATCTGACGACGATAACAATACCTACAACGTTTGAAAAGGGGGCGGAGTTTCCCATGGGAAAGACTAGGCCAGGTGTGCTAAGGCCCGCCCCCTTTTCTCCCAATACGGGCTAAAAAAATTCAGTTTAAGTGTTCGAGGTTTGGGAGGCATGCTTGCGTGGGCAATGGGCTGGTGGTCTAGTCGGTCAGTGTTCCACGGTTCACTGGAAGGCAGCATCACTAGAACAGGGCTCGCCACTCATGCTGAGGATCAGACTGCGAACAATGGGGTTTTTGGTTGGTTTTTCCCCGGTAAAAAGCATTTTCCCTTTCTATGTACTGAGCCTTTACGTGGCGAGAGGGACCAACAGACTACATTTGTCTGGCTAATCCAGTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGMTCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTGTTCGCTTAACAACCAATCATGAAAATTGGAATTTGTCTGGAATTCATACCTTTGCGCAAACAGCAGATTGAGCCTGAAATTTTGAGTCAAATCTTTAAATTGAACTTAGAACGTTTTAATAAAAAATTCAAATAAATTCAAATAAAATAATCTATTTAAAAACCTCTAAAAAGCCTGATAGGGTATTATTGAAACCAGCCGGCCTGATTTCCTGGGGATGGAAATAAAAGTCTGAAAAAAAAATCTGGAACCTTCTGGAAGTGCCTAGAGCCTTATCTTTAGAAAACGGCTAGAACGGTTGAAAACATGCTAGATACGTTCTGGAACCTTCTAGAAGGCTCTAACACCTTCTAGAATCTTCAGAAGACGTCTAGAATATTCTGAAAAAAACTGAACTGATTCTTGAATGTGATTGTTACTGTCGTCGCCCTGAAAAAATAACTTTTCTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>502 324 174</canonical_bands>
                <polymorphic_bands>676 324</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>285 248 133 129 81 68 36 20</canonical_bands>
                <polymorphic_bands>321 248 133 129 81 68 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAAAAGTATGTGCTTAAGTTAGA</pcr_primer_p1>
		<pcr_primer_p2>ACAGGAAGCAGAGGAAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>683</pcr_amplicon_size>
		<canonical_amplicon>GATCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTGT</canonical_amplicon>
		<polymorphic_amplicon>GMTCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33839</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>300987</contig_pos>
        <strand></strand>
        <context>ATACCTTTGC[G/A]CAAACAGCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTAACAACCAATCATGAAAATTGGAATTTGTCTGGAATTCATACCTTTGC</left_flank>
        <right_flank>CAAACAGCAGATTGAGCCTGAAATTTTGAGTCAAATCTTTAAATTGAACT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAAAAGGGGGCGGAGTTTCCCATGGGAAAGACTAGGCCAGGTGTGCTAAGGCCCGCCCCCTTTTCTCCCAATACGGGCTAAAAAAATTCAGTTTAAGTGTTCGAGGTTTGGGAGGCATGCTTGCGTGGGCAATGGGCTGGTGGTCTAGTCGGTCAGTGTTCCACGGTTCACTGGAAGGCAGCATCACTAGAACAGGGCTCGCCACTCATGCTGAGGATCAGACTGCGAACAATGGGGTTTTTGGTTGGTTTTTCCCCGGTAAAAAGCATTTTCCCTTTCTATGTACTGAGCCTTTACGTGGCGAGAGGGACCAACAGACTACATTTGTCTGGCTAATCCAGTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGATCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTGTTCGCTTAACAACCAATCATGAAAATTGGAATTTGTCTGGAATTCATACCTTTGCGCAAACAGCAGATTGAGCCTGAAATTTTGAGTCAAATCTTTAAATTGAACTTAGAACGTTTTAATAAAAAATTCAAATAAATTCAAATAAAATAATCTATTTAAAAACCTCTAAAAAGCCTGATAGGGTATTATTGAAACCAGCCGGCCTGATTTCCTGGGGATGGAAATAAAAGTCTGAAAAAAAAATCTGGAACCTTCTGGAAGTGCCTAGAGCCTTATCTTTAGAAAACGGCTAGAACGGTTGAAAACATGCTAGATACGTTCTGGAACCTTCTAGAAGGCTCTAACACCTTCTAGAATCTTCAGAAGACGTCTAGAATATTCTGAAAAAAACTGAACTGATTCTTGAATGTGATTGTTACTGTCGTCGCCCTGAAAAAATAACTTTTCTAAATGCACATTTTCCAACAAACAAAAAGCTCCTTGAGCTCTTTTTTCCAGCCCTCCGGTCCCATGCAAGTCCCAGGATGACCTAGATTTTGTTCTTGAGATCCAATTA</canonical>
            <polymorphic>TTTGAAAAGGGGGCGGAGTTTCCCATGGGAAAGACTAGGCCAGGTGTGCTAAGGCCCGCCCCCTTTTCTCCCAATACGGGCTAAAAAAATTCAGTTTAAGTGTTCGAGGTTTGGGAGGCATGCTTGCGTGGGCAATGGGCTGGTGGTCTAGTCGGTCAGTGTTCCACGGTTCACTGGAAGGCAGCATCACTAGAACAGGGCTCGCCACTCATGCTGAGGATCAGACTGCGAACAATGGGGTTTTTGGTTGGTTTTTCCCCGGTAAAAAGCATTTTCCCTTTCTATGTACTGAGCCTTTACGTGGCGAGAGGGACCAACAGACTACATTTGTCTGGCTAATCCAGTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGATCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTGTTCGCTTAACAACCAATCATGAAAATTGGAATTTGTCTGGAATTCATACCTTTGCRCAAACAGCAGATTGAGCCTGAAATTTTGAGTCAAATCTTTAAATTGAACTTAGAACGTTTTAATAAAAAATTCAAATAAATTCAAATAAAATAATCTATTTAAAAACCTCTAAAAAGCCTGATAGGGTATTATTGAAACCAGCCGGCCTGATTTCCTGGGGATGGAAATAAAAGTCTGAAAAAAAAATCTGGAACCTTCTGGAAGTGCCTAGAGCCTTATCTTTAGAAAACGGCTAGAACGGTTGAAAACATGCTAGATACGTTCTGGAACCTTCTAGAAGGCTCTAACACCTTCTAGAATCTTCAGAAGACGTCTAGAATATTCTGAAAAAAACTGAACTGATTCTTGAATGTGATTGTTACTGTCGTCGCCCTGAAAAAATAACTTTTCTAAATGCACATTTTCCAACAAACAAAAAGCTCCTTGAGCTCTTTTTTCCAGCCCTCCGGTCCCATGCAAGTCCCAGGATGACCTAGATTTTGTTCTTGAGATCCAATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCGCA</site>
                <isoschizomers>
                    <enzyme>Acc16I</enzyme>
                    <enzyme>AviII</enzyme>
                    <enzyme>FspI</enzyme>
                    <enzyme>MstI</enzyme>
                    <enzyme>NsbI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAACTTCCTCTGCTTCCTGT</pcr_primer_p1>
		<pcr_primer_p2>CTGGTTTCAATAATACCCTATCA</pcr_primer_p2>
		<pcr_amplicon_size>219</pcr_amplicon_size>
		<canonical_amplicon>ATAAACTTCCTCTGCTTCCTGTTCGCTTAACAACCAATCATGAAAATTGGAATTTGTCTGGAATTCATACCTTTGCGCAAACAGCAGATTGAGCCTGAAATTTTGAGTCAAATCTTTAAATTGAACTTAGAACGTTTTAATAAAAAATTCAAATAAATTCAAATAAAATAATCTATTTAAAAACCTCTAAAAAGCCTGATAGGGTATTATTGAAACCAG</canonical_amplicon>
		<polymorphic_amplicon>ATAAACTTCCTCTGCTTCCTGTTCGCTTAACAACCAATCATGAAAATTGGAATTTGTCTGGAATTCATACCTTTGCRCAAACAGCAGATTGAGCCTGAAATTTTGAGTCAAATCTTTAAATTGAACTTAGAACGTTTTAATAAAAAATTCAAATAAATTCAAATAAAATAATCTATTTAAAAACCTCTAAAAAGCCTGATAGGGTATTATTGAAACCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33840</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>301020</contig_pos>
        <strand></strand>
        <context>ATTTTGAGTC[A/G]AAKCTTTAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAATTCATACCTTTGCGCAAACAGCAGATTGAGCCTGAAATTTTGAGTC</left_flank>
        <right_flank>AATCTTTAAATTGAACTTAGAACGTTTTAATAAAAAATTCAAATAAATTC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTAGGCCAGGTGTGCTAAGGCCCGCCCCCTTTTCTCCCAATACGGGCTAAAAAAATTCAGTTTAAGTGTTCGAGGTTTGGGAGGCATGCTTGCGTGGGCAATGGGCTGGTGGTCTAGTCGGTCAGTGTTCCACGGTTCACTGGAAGGCAGCATCACTAGAACAGGGCTCGCCACTCATGCTGAGGATCAGACTGCGAACAATGGGGTTTTTGGTTGGTTTTTCCCCGGTAAAAAGCATTTTCCCTTTCTATGTACTGAGCCTTTACGTGGCGAGAGGGACCAACAGACTACATTTGTCTGGCTAATCCAGTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGATCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTGTTCGCTTAACAACCAATCATGAAAATTGGAATTTGTCTGGAATTCATACCTTTGCGCAAACAGCAGATTGAGCCTGAAATTTTGAGTCAAATCTTTAAATTGAACTTAGAACGTTTTAATAAAAAATTCAAATAAATTCAAATAAAATAATCTATTTAAAAACCTCTAAAAAGCCTGATAGGGTATTATTGAAACCAGCCGGCCTGATTTCCTGGGGATGGAAATAAAAGTCTGAAAAAAAAATCTGGAACCTTCTGGAAGTGCCTAGAGCCTTATCTTTAGAAAACGGCTAGAACGGTTGAAAACATGCTAGATACGTTCTGGAACCTTCTAGAAGGCTCTAACACCTTCTAGAATCTTCAGAAGACGTCTAGAATATTCTGAAAAAAACTGAACTGATTCTTGAATGTGATTGTTACTGTCGTCGCCCTGAAAAAATAACTTTTCTAAATGCACATTTTCCAACAAACAAAAAGCTCCTTGAGCTCTTTTTTCCAGCCCTCCGGTCCCATGCAAGTCCCAGGATGACCTAGATTTTGTTCTTGAGATCCAATTACCCAGAAAAAAGTCTTGACCTCCACGTTTTGAT</canonical>
            <polymorphic>ACTAGGCCAGGTGTGCTAAGGCCCGCCCCCTTTTCTCCCAATACGGGCTAAAAAAATTCAGTTTAAGTGTTCGAGGTTTGGGAGGCATGCTTGCGTGGGCAATGGGCTGGTGGTCTAGTCGGTCAGTGTTCCACGGTTCACTGGAAGGCAGCATCACTAGAACAGGGCTCGCCACTCATGCTGAGGATCAGACTGCGAACAATGGGGTTTTTGGTTGGTTTTTCCCCGGTAAAAAGCATTTTCCCTTTCTATGTACTGAGCCTTTACGTGGCGAGAGGGACCAACAGACTACATTTGTCTGGCTAATCCAGTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGATCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTGTTCGCTTAACAACCAATCATGAAAATTGGAATTTGTCTGGAATTCATACCTTTGCGCAAACAGCAGATTGAGCCTGAAATTTTGAGTCRAATCTTTAAATTGAACTTAGAACGTTTTAATAAAAAATTCAAATAAATTCAAATAAAATAATCTATTTAAAAACCTCTAAAAAGCCTGATAGGGTATTATTGAAACCAGCCGGCCTGATTTCCTGGGGATGGAAATAAAAGTCTGAAAAAAAAATCTGGAACCTTCTGGAAGTGCCTAGAGCCTTATCTTTAGAAAACGGCTAGAACGGTTGAAAACATGCTAGATACGTTCTGGAACCTTCTAGAAGGCTCTAACACCTTCTAGAATCTTCAGAAGACGTCTAGAATATTCTGAAAAAAACTGAACTGATTCTTGAATGTGATTGTTACTGTCGTCGCCCTGAAAAAATAACTTTTCTAAATGCACATTTTCCAACAAACAAAAAGCTCCTTGAGCTCTTTTTTCCAGCCCTCCGGTCCCATGCAAGTCCCAGGATGACCTAGATTTTGTTCTTGAGATCCAATTACCCAGAAAAAAGTCTTGACCTCCACGTTTTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAACTTCCTCTGCTTCCTGT</pcr_primer_p1>
		<pcr_primer_p2>CTGGTTTCAATAATACCCTATCA</pcr_primer_p2>
		<pcr_amplicon_size>219</pcr_amplicon_size>
		<canonical_amplicon>ATAAACTTCCTCTGCTTCCTGTTCGCTTAACAACCAATCATGAAAATTGGAATTTGTCTGGAATTCATACCTTTGCGCAAACAGCAGATTGAGCCTGAAATTTTGAGTCAAATCTTTAAATTGAACTTAGAACGTTTTAATAAAAAATTCAAATAAATTCAAATAAAATAATCTATTTAAAAACCTCTAAAAAGCCTGATAGGGTATTATTGAAACCAG</canonical_amplicon>
		<polymorphic_amplicon>ATAAACTTCCTCTGCTTCCTGTTCGCTTAACAACCAATCATGAAAATTGGAATTTGTCTGGAATTCATACCTTTGCGCAAACAGCAGATTGAGCCTGAAATTTTGAGTCRAATCTTTAAATTGAACTTAGAACGTTTTAATAAAAAATTCAAATAAATTCAAATAAAATAATCTATTTAAAAACCTCTAAAAAGCCTGATAGGGTATTATTGAAACCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33841</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>301023</contig_pos>
        <strand></strand>
        <context>TTGAGTCRAA[T/G]CTTTAAATTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATTCATACCTTTGCGCAAACAGCAGATTGAGCCTGAAATTTTGAGTCAAA</left_flank>
        <right_flank>CTTTAAATTGAACTTAGAACGTTTTAATAAAAAATTCAAATAAATTCAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGCCAGGTGTGCTAAGGCCCGCCCCCTTTTCTCCCAATACGGGCTAAAAAAATTCAGTTTAAGTGTTCGAGGTTTGGGAGGCATGCTTGCGTGGGCAATGGGCTGGTGGTCTAGTCGGTCAGTGTTCCACGGTTCACTGGAAGGCAGCATCACTAGAACAGGGCTCGCCACTCATGCTGAGGATCAGACTGCGAACAATGGGGTTTTTGGTTGGTTTTTCCCCGGTAAAAAGCATTTTCCCTTTCTATGTACTGAGCCTTTACGTGGCGAGAGGGACCAACAGACTACATTTGTCTGGCTAATCCAGTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGATCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTGTTCGCTTAACAACCAATCATGAAAATTGGAATTTGTCTGGAATTCATACCTTTGCGCAAACAGCAGATTGAGCCTGAAATTTTGAGTCAAATCTTTAAATTGAACTTAGAACGTTTTAATAAAAAATTCAAATAAATTCAAATAAAATAATCTATTTAAAAACCTCTAAAAAGCCTGATAGGGTATTATTGAAACCAGCCGGCCTGATTTCCTGGGGATGGAAATAAAAGTCTGAAAAAAAAATCTGGAACCTTCTGGAAGTGCCTAGAGCCTTATCTTTAGAAAACGGCTAGAACGGTTGAAAACATGCTAGATACGTTCTGGAACCTTCTAGAAGGCTCTAACACCTTCTAGAATCTTCAGAAGACGTCTAGAATATTCTGAAAAAAACTGAACTGATTCTTGAATGTGATTGTTACTGTCGTCGCCCTGAAAAAATAACTTTTCTAAATGCACATTTTCCAACAAACAAAAAGCTCCTTGAGCTCTTTTTTCCAGCCCTCCGGTCCCATGCAAGTCCCAGGATGACCTAGATTTTGTTCTTGAGATCCAATTACCCAGAAAAAAGTCTTGACCTCCACGTTTTGATGAG</canonical>
            <polymorphic>AGGCCAGGTGTGCTAAGGCCCGCCCCCTTTTCTCCCAATACGGGCTAAAAAAATTCAGTTTAAGTGTTCGAGGTTTGGGAGGCATGCTTGCGTGGGCAATGGGCTGGTGGTCTAGTCGGTCAGTGTTCCACGGTTCACTGGAAGGCAGCATCACTAGAACAGGGCTCGCCACTCATGCTGAGGATCAGACTGCGAACAATGGGGTTTTTGGTTGGTTTTTCCCCGGTAAAAAGCATTTTCCCTTTCTATGTACTGAGCCTTTACGTGGCGAGAGGGACCAACAGACTACATTTGTCTGGCTAATCCAGTACACAAAATCTGAAGAAAATCGAGTTTAACTATAAATCCTTATTTCAGATCATGGTCCAAAAAAAAATCATATCTTATATAAACTTCCTCTGCTTCCTGTTCGCTTAACAACCAATCATGAAAATTGGAATTTGTCTGGAATTCATACCTTTGCGCAAACAGCAGATTGAGCCTGAAATTTTGAGTCAAAKCTTTAAATTGAACTTAGAACGTTTTAATAAAAAATTCAAATAAATTCAAATAAAATAATCTATTTAAAAACCTCTAAAAAGCCTGATAGGGTATTATTGAAACCAGCCGGCCTGATTTCCTGGGGATGGAAATAAAAGTCTGAAAAAAAAATCTGGAACCTTCTGGAAGTGCCTAGAGCCTTATCTTTAGAAAACGGCTAGAACGGTTGAAAACATGCTAGATACGTTCTGGAACCTTCTAGAAGGCTCTAACACCTTCTAGAATCTTCAGAAGACGTCTAGAATATTCTGAAAAAAACTGAACTGATTCTTGAATGTGATTGTTACTGTCGTCGCCCTGAAAAAATAACTTTTCTAAATGCACATTTTCCAACAAACAAAAAGCTCCTTGAGCTCTTTTTTCCAGCCCTCCGGTCCCATGCAAGTCCCAGGATGACCTAGATTTTGTTCTTGAGATCCAATTACCCAGAAAAAAGTCTTGACCTCCACGTTTTGATGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAACTTCCTCTGCTTCCTGT</pcr_primer_p1>
		<pcr_primer_p2>CTGGTTTCAATAATACCCTATCA</pcr_primer_p2>
		<pcr_amplicon_size>219</pcr_amplicon_size>
		<canonical_amplicon>ATAAACTTCCTCTGCTTCCTGTTCGCTTAACAACCAATCATGAAAATTGGAATTTGTCTGGAATTCATACCTTTGCGCAAACAGCAGATTGAGCCTGAAATTTTGAGTCAAATCTTTAAATTGAACTTAGAACGTTTTAATAAAAAATTCAAATAAATTCAAATAAAATAATCTATTTAAAAACCTCTAAAAAGCCTGATAGGGTATTATTGAAACCAG</canonical_amplicon>
		<polymorphic_amplicon>ATAAACTTCCTCTGCTTCCTGTTCGCTTAACAACCAATCATGAAAATTGGAATTTGTCTGGAATTCATACCTTTGCGCAAACAGCAGATTGAGCCTGAAATTTTGAGTCAAAKCTTTAAATTGAACTTAGAACGTTTTAATAAAAAATTCAAATAAATTCAAATAAAATAATCTATTTAAAAACCTCTAAAAAGCCTGATAGGGTATTATTGAAACCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33842</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>302300</contig_pos>
        <strand></strand>
        <context>atctattaaa[A/G]gagccgagat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAATATCACCTACATTTTTGTAGTTTTCAAATTTTTGCAATCTATTAAA</left_flank>
        <right_flank>GAGCCGAGATAATTGAGCTCAAAGACCAAGTACAGCAAAGTGACAGAACT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAACGATTCTCAGGGACAACAAACTGAATAGGAATTCGAATCGCCGCCGGACGAAGGATTCAGCTCGCGAGAGGAAAAAAAACGAGTTGCCGCCAGTTCTGATGCCAAAGTTTCCGTCTCAAAGACTAGTTCGAAAGAAAAAGTCCAACGACAAAATAGATCAAAAATGGACGGATCGGGAGGATGAGGAAGGGATACCGCAGTGTCCGACGGACAAGTTTTTGGAGGACGAAGAAGAATTGGGGGCGGAGCAATGGAACGTGGATAGATGTCAAGAGCCGGAAGAGGAGGTAGATGAGACTCAAGATCAACAACCACCGGATCAGTTAATTGTGGTAAGATTTGGAAAGCTTCAATAGAAGGTTCCTTATAGTGTCGAGTTACAGATCAATTATCTCTGATCCTATGCGAGATATCAAGAACGTGTCAACTGATAAAATGTTGATTATAATATCACCTACATTTTTGTAGTTTTCAAATTTTTGCAATCTATTAAAAGAGCCGAGATAATTGAGCTCAAAGACCAAGTACAGCAAAGTGACAGAACTGTTTCTACATGTTCTGGCACTCTGTGGTTTTCAAGCCGTATATCTTTTTCTAGAGACTTTTTAAAAAAAAAGTTGTCAACTACAAAAATGAAGCTATATTTCTGTTTTATATTTTCTGGGATTTTCAAAACATTTCGACAATTTTGAGTTACATTTTTAAGAGCCATTACTTATCACTGAAAAATCTAAATTACCAAAAAATATCTCATATTTGAGGTAAGTTATCTCGATTCCTGTAAAAAATATCAAAAAGCGGTCAACCAATAAAATACTAATGACATCATGATAAACAATTTATCAATTGACACTTTTTTCATATCTTTCCTAGATATCGAGATAATTGAGCTCAAAGTTGATAGTATGGAATAAACGAGGTGTTTCCAGGAAGACAATCTGAAACAGCCAGTCCCTGAAAAACCTTCACTGGTTCTAGAAAAACCGATCCGTCCT</canonical>
            <polymorphic>CAAAACGATTCTCAGGGACAACAAACTGAATAGGAATTCGAATCGCCGCCGGACGAAGGATTCAGCTCGCGAGAGGAAAAAAAACGAGTTGCCGCCAGTTCTGATGCCAAAGTTTCCGTCTCAAAGACTAGTTCGAAAGAAAAAGTCCAACGACAAAATAGATCAAAAATGGACGGATCGGGAGGATGAGGAAGGGATACCGCAGTGTCCGACGGACAAGTTTTTGGAGGACGAAGAAGAATTGGGGGCGGAGCAATGGAACGTGGATAGATGTCAAGAGCCGGAAGAGGAGGTAGATGAGACTCAAGATCAACAACCACCGGATCAGTTAATTGTGGTAAGATTTGGAAAGCTTCAATAGAAGGTTCCTTATAGTGTCGAGTTACAGATCAATTATCTCTGATCCTATGCGAGATATCAAGAACGTGTCAACTGATAAAATGTTGATTATAATATCACCTACATTTTTGTAGTTTTCAAATTTTTGCAATCTATTAAARGAGCCGAGATAATTGAGCTCAAAGACCAAGTACAGCAAAGTGACAGAACTGTTTCTACATGTTCTGGCACTCTGTGGTTTTCAAGCCGTATATCTTTTTCTAGAGACTTTTTAAAAAAAAAGTTGTCAACTACAAAAATGAAGCTATATTTCTGTTTTATATTTTCTGGGATTTTCAAAACATTTCGACAATTTTGAGTTACATTTTTAAGAGCCATTACTTATCACTGAAAAATCTAAATTACCAAAAAATATCTCATATTTGAGGTAAGTTATCTCGATTCCTGTAAAAAATATCAAAAAGCGGTCAACCAATAAAATACTAATGACATCATGATAAACAATTTATCAATTGACACTTTTTTCATATCTTTCCTAGATATCGAGATAATTGAGCTCAAAGTTGATAGTATGGAATAAACGAGGTGTTTCCAGGAAGACAATCTGAAACAGCCAGTCCCTGAAAAACCTTCACTGGTTCTAGAAAAACCGATCCGTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATCAGTTAATTGTGGTAAGATT</pcr_primer_p1>
		<pcr_primer_p2>GAGTGCCAGAACATGTAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGATCAGTTAATTGTGGTAAGATTTGGAAAGCTTCAATAGAAGGTTCCTTATAGTGTCGAGTTACAGATCAATTATCTCTGATCCTATGCGAGATATCAAGAACGTGTCAACTGATAAAATGTTGATTATAATATCACCTACATTTTTGTAGTTTTCAAATTTTTGCAATCTATTAAAAGAGCCGAGATAATTGAGCTCAAAGACCAAGTACAGCAAAGTGACAGAACTGTTTCTACATGTTCTGGCACTC</canonical_amplicon>
		<polymorphic_amplicon>GGATCAGTTAATTGTGGTAAGATTTGGAAAGCTTCAATAGAAGGTTCCTTATAGTGTCGAGTTACAGATCAATTATCTCTGATCCTATGCGAGATATCAAGAACGTGTCAACTGATAAAATGTTGATTATAATATCACCTACATTTTTGTAGTTTTCAAATTTTTGCAATCTATTAAARGAGCCGAGATAATTGAGCTCAAAGACCAAGTACAGCAAAGTGACAGAACTGTTTCTACATGTTCTGGCACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33843</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>302433</contig_pos>
        <strand></strand>
        <context>ttgtcaacta[C/A]aaaaatgaag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AAGCCGTATATCTTTTTCTAGAGACTTTTTAAAAAAAAAGTTGTCAACTA</left_flank>
        <right_flank>AAAAATGAAGCTATATTTCTGTTTTATATTTTCTGGGATTTTCAAAACAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAAAGAAAAAGTCCAACGACAAAATAGATCAAAAATGGACGGATCGGGAGGATGAGGAAGGGATACCGCAGTGTCCGACGGACAAGTTTTTGGAGGACGAAGAAGAATTGGGGGCGGAGCAATGGAACGTGGATAGATGTCAAGAGCCGGAAGAGGAGGTAGATGAGACTCAAGATCAACAACCACCGGATCAGTTAATTGTGGTAAGATTTGGAAAGCTTCAATAGAAGGTTCCTTATAGTGTCGAGTTACAGATCAATTATCTCTGATCCTATGCGAGATATCAAGAACGTGTCAACTGATAAAATGTTGATTATAATATCACCTACATTTTTGTAGTTTTCAAATTTTTGCAATCTATTAAAAGAGCCGAGATAATTGAGCTCAAAGACCAAGTACAGCAAAGTGACAGAACTGTTTCTACATGTTCTGGCACTCTGTGGTTTTCAAGCCGTATATCTTTTTCTAGAGACTTTTTAAAAAAAAAGTTGTCAACTACAAAAATGAAGCTATATTTCTGTTTTATATTTTCTGGGATTTTCAAAACATTTCGACAATTTTGAGTTACATTTTTAAGAGCCATTACTTATCACTGAAAAATCTAAATTACCAAAAAATATCTCATATTTGAGGTAAGTTATCTCGATTCCTGTAAAAAATATCAAAAAGCGGTCAACCAATAAAATACTAATGACATCATGATAAACAATTTATCAATTGACACTTTTTTCATATCTTTCCTAGATATCGAGATAATTGAGCTCAAAGTTGATAGTATGGAATAAACGAGGTGTTTCCAGGAAGACAATCTGAAACAGCCAGTCCCTGAAAAACCTTCACTGGTTCTAGAAAAACCGATCCGTCCTGAAAAATCACAAGCCAACCCAAAAGGCAAAGAAAATCAAAGTGCGCGGAGCGAGCATCGAAAAAGGGGAACGGAAAGTGACAGGAACAAAAAAGTGGACACCAAAAGACGTATTTCGAAACGGTCATCTGCTG</canonical>
            <polymorphic>CGAAAGAAAAAGTCCAACGACAAAATAGATCAAAAATGGACGGATCGGGAGGATGAGGAAGGGATACCGCAGTGTCCGACGGACAAGTTTTTGGAGGACGAAGAAGAATTGGGGGCGGAGCAATGGAACGTGGATAGATGTCAAGAGCCGGAAGAGGAGGTAGATGAGACTCAAGATCAACAACCACCGGATCAGTTAATTGTGGTAAGATTTGGAAAGCTTCAATAGAAGGTTCCTTATAGTGTCGAGTTACAGATCAATTATCTCTGATCCTATGCGAGATATCAAGAACGTGTCAACTGATAAAATGTTGATTATAATATCACCTACATTTTTGTAGTTTTCAAATTTTTGCAATCTATTAAAAGAGCCGAGATAATTGAGCTCAAAGACCAAGTACAGCAAAGTGACAGAACTGTTTCTACATGTTCTGGCACTCTGTGGTTTTCAAGCCGTATATCTTTTTCTAGAGACTTTTTAAAAAAAAAGTTGTCAACTAMAAAAATGAAGCTATATTTCTGTTTTATATTTTCTGGGATTTTCAAAACATTTCGACAATTTTGAGTTACATTTTTAAGAGCCATTACTTATCACTGAAAAATCTAAATTACCAAAAAATATCTCATATTTGAGGTAAGTTATCTCGATTCCTGTAAAAAATATCAAAAAGCGGTCAACCAATAAAATACTAATGACATCATGATAAACAATTTATCAATTGACACTTTTTTCATATCTTTCCTAGATATCGAGATAATTGAGCTCAAAGTTGATAGTATGGAATAAACGAGGTGTTTCCAGGAAGACAATCTGAAACAGCCAGTCCCTGAAAAACCTTCACTGGTTCTAGAAAAACCGATCCGTCCTGAAAAATCACAAGCCAACCCAAAAGGCAAAGAAAATCAAAGTGCGCGGAGCGAGCATCGAAAAAGGGGAACGGAAAGTGACAGGAACAAAAAAGTGGACACCAAAAGACGTATTTCGAAACGGTCATCTGCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTACAGCAAAGTGACAGAACT</pcr_primer_p1>
		<pcr_primer_p2>TTTGGTAATTTAGATTTTTCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>221</pcr_amplicon_size>
		<canonical_amplicon>AAGTACAGCAAAGTGACAGAACTGTTTCTACATGTTCTGGCACTCTGTGGTTTTCAAGCCGTATATCTTTTTCTAGAGACTTTTTAAAAAAAAAGTTGTCAACTACAAAAATGAAGCTATATTTCTGTTTTATATTTTCTGGGATTTTCAAAACATTTCGACAATTTTGAGTTACATTTTTAAGAGCCATTACTTATCACTGAAAAATCTAAATTACCAAA</canonical_amplicon>
		<polymorphic_amplicon>AAGTACAGCAAAGTGACAGAACTGTTTCTACATGTTCTGGCACTCTGTGGTTTTCAAGCCGTATATCTTTTTCTAGAGACTTTTTAAAAAAAAAGTTGTCAACTAMAAAAATGAAGCTATATTTCTGTTTTATATTTTCTGGGATTTTCAAAACATTTCGACAATTTTGAGTTACATTTTTAAGAGCCATTACTTATCACTGAAAAATCTAAATTACCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33844</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>333640</contig_pos>
        <strand>+</strand>
        <context>TGCACACCTT[A/G]CTTCCACTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCCCGGGATGCATGCTCTGCCGTCGCGAGGCTGCCGAATTGCACACCTT</left_flank>
        <right_flank>CTTCCACTTCTCAAAGAGAAGGGAATCGGATTGGTAGGAGGTATTCGAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAGAAGAATGCCACGAAGCTACAGTAACCGAACTTCGCTTCGAGACCCGACCAAATCCAATAACGTTCCTTTAAAAACTTTTTTCCATTTTTTTCTCGCTGAATTTTTTCTCTCAAAGCAACTTTTCTAAAGAACGAAATCTTTCAGAAAAAAGAAAAGAAAAATGGCATTTCTCGGCTACGGAGCTGTCGCCGCTCTAGGCGGTGCATTCATCTACGCCAATCTTCCAACCTACCTGACCATTGGAGCCGTGGCTCCGAAATTCGCTCATTTGGCAACAGCCAAGCTTATTCCAATCAAAGGAGGGCCCAGAGAAATCGAGACTATTGATAAGAGCGAGCAGTTTACGGTGAGATTTTGTGAAGAAATTTTTCAAAAGCTAAAAAAAATGATTTCAGGCCAACGAGCTCTTCCAAAAGGGACCTATCATGGTTATGGCTGTGCGCCGCCCGGGATGCATGCTCTGCCGTCGCGAGGCTGCCGAATTGCACACCTTACTTCCACTTCTCAAAGAGAAGGGAATCGGATTGGTAGGAGGTATTCGAATTTGAGTCAAAATTCAGTTTAAGAATTTCAGGCTGCCGTTGTGCACGAATCCCGTGGCGCCAACGAATTCAAATCGTACTTCTCGGGAGGCGACGTCTATTTGGACACCGAGAGAACGTTCTACGGACCAAACGAGCGTTGGCTGCCCCATTGGGTCGGCTTCCTTCGTTTCGGAACCTACTCGAATGTCTATAAGGCAAAGAAGGCGAAGGTTGAAGGAAATATGGAGGGAGAAGGAAGACTTCTGGGAGGTAAATAGGAAGTTTTTAGAAAAAAGTGCTAGAATTCGGATTTTCAGGCGTCTACCTAATTGCCAACAACGACATCGTCTACACTCATCTGGAAAAGGAGTGGGGAGACGCCGCCAACATCGACGAAGTTCGTGCTGCCATTGAGACTTTCAATGTAAAGACTAAATAATTTTTTGCGATTGAACTTTGAAAAAAGACAA</canonical>
            <polymorphic>TTGAAGAAGAATGCCACGAAGCTACAGTAACCGAACTTCGCTTCGAGACCCGACCAAATCCAATAACGTTCCTTTAAAAACTTTTTTCCATTTTTTTCTCGCTGAATTTTTTCTCTCAAAGCAACTTTTCTAAAGAACGAAATCTTTCAGAAAAAAGAAAAGAAAAATGGCATTTCTCGGCTACGGAGCTGTCGCCGCTCTAGGCGGTGCATTCATCTACGCCAATCTTCCAACCTACCTGACCATTGGAGCCGTGGCTCCGAAATTCGCTCATTTGGCAACAGCCAAGCTTATTCCAATCAAAGGAGGGCCCAGAGAAATCGAGACTATTGATAAGAGCGAGCAGTTTACGGTGAGATTTTGTGAAGAAATTTTTCAAAAGCTAAAAAAAATGATTTCAGGCCAACGAGCTCTTCCAAAAGGGACCTATCATGGTTATGGCTGTGCGCCGCCCGGGATGCATGCTCTGCCGTCGCGAGGCTGCCGAATTGCACACCTTRCTTCCACTTCTCAAAGAGAAGGGAATCGGATTGGTAGGAGGTATTCGAATTTGAGTCAAAATTCAGTTTAAGAATTTCAGGCTGCCGTTGTGCACGAATCCCGTGGCGCCAACGAATTCAAATCGTACTTCTCGGGAGGCGACGTCTATTTGGACACCGAGAGAACGTTCTACGGACCAAACGAGCGTTGGCTGCCCCATTGGGTCGGCTTCCTTCGTTTCGGAACCTACTCGAATGTCTATAAGGCAAAGAAGGCGAAGGTTGAAGGAAATATGGAGGGAGAAGGAAGACTTCTGGGAGGTAAATAGGAAGTTTTTAGAAAAAAGTGCTAGAATTCGGATTTTCAGGCGTCTACCTAATTGCCAACAACGACATCGTCTACACTCATCTGGAAAAGGAGTGGGGAGACGCCGCCAACATCGACGAAGTTCGTGCTGCCATTGAGACTTTCAATGTAAAGACTAAATAATTTTTTGCGATTGAACTTTGAAAAAAGACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAGAAATCGAGACTATTGATAA</pcr_primer_p1>
		<pcr_primer_p2>ACTCAAATTCGAATACCTCCTAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAGAGAAATCGAGACTATTGATAAGAGCGAGCAGTTTACGGTGAGATTTTGTGAAGAAATTTTTCAAAAGCTAAAAAAAATGATTTCAGGCCAACGAGCTCTTCCAAAAGGGACCTATCATGGTTATGGCTGTGCGCCGCCCGGGATGCATGCTCTGCCGTCGCGAGGCTGCCGAATTGCACACCTTACTTCCACTTCTCAAAGAGAAGGGAATCGGATTGGTAGGAGGTATTCGAATTTGAGT</canonical_amplicon>
		<polymorphic_amplicon>CAGAGAAATCGAGACTATTGATAAGAGCGAGCAGTTTACGGTGAGATTTTGTGAAGAAATTTTTCAAAAGCTAAAAAAAATGATTTCAGGCCAACGAGCTCTTCCAAAAGGGACCTATCATGGTTATGGCTGTGCGCCGCCCGGGATGCATGCTCTGCCGTCGCGAGGCTGCCGAATTGCACACCTTRCTTCCACTTCTCAAAGAGAAGGGAATCGGATTGGTAGGAGGTATTCGAATTTGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33845</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>333888</contig_pos>
        <strand>+</strand>
        <context>TCTATAAGGC[A/G]AAGAAGGCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTGGGTCGGCTTCCTTCGTTTCGGAACCTACTCGAATGTCTATAAGGC</left_flank>
        <right_flank>AAGAAGGCGAAGGTTGAAGGAAATATGGAGGGAGAAGGAAGACTTCTGGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCCGTGGCTCCGAAATTCGCTCATTTGGCAACAGCCAAGCTTATTCCAATCAAAGGAGGGCCCAGAGAAATCGAGACTATTGATAAGAGCGAGCAGTTTACGGTGAGATTTTGTGAAGAAATTTTTCAAAAGCTAAAAAAAATGATTTCAGGCCAACGAGCTCTTCCAAAAGGGACCTATCATGGTTATGGCTGTGCGCCGCCCGGGATGCATGCTCTGCCGTCGCGAGGCTGCCGAATTGCACACCTTACTTCCACTTCTCAAAGAGAAGGGAATCGGATTGGTAGGAGGTATTCGAATTTGAGTCAAAATTCAGTTTAAGAATTTCAGGCTGCCGTTGTGCACGAATCCCGTGGCGCCAACGAATTCAAATCGTACTTCTCGGGAGGCGACGTCTATTTGGACACCGAGAGAACGTTCTACGGACCAAACGAGCGTTGGCTGCCCCATTGGGTCGGCTTCCTTCGTTTCGGAACCTACTCGAATGTCTATAAGGCAAAGAAGGCGAAGGTTGAAGGAAATATGGAGGGAGAAGGAAGACTTCTGGGAGGTAAATAGGAAGTTTTTAGAAAAAAGTGCTAGAATTCGGATTTTCAGGCGTCTACCTAATTGCCAACAACGACATCGTCTACACTCATCTGGAAAAGGAGTGGGGAGACGCCGCCAACATCGACGAAGTTCGTGCTGCCATTGAGACTTTCAATGTAAAGACTAAATAATTTTTTGCGATTGAACTTTGAAAAAAGACAATGTTTTACATGTAATTTAATGACCTCGATTCGAATTCTTTTGTGTACAGTGTTAACTTTTTACCTCAATAAATGTATAGAAACAGAAAAAGTGGAACAATTTAGAACTAAATTTTTTTTTCTTCGTTTTTTTGCAAAATTTTTAGACCTTTTTAGGATTTCCAGCTATTTTCAAAGATTCTCTCTCGATTTTTCCGAAGTTTTTGTCTGCAATTTGACGGGATGGTGTACGCGAGGGTTACTTTAGAT</canonical>
            <polymorphic>GAGCCGTGGCTCCGAAATTCGCTCATTTGGCAACAGCCAAGCTTATTCCAATCAAAGGAGGGCCCAGAGAAATCGAGACTATTGATAAGAGCGAGCAGTTTACGGTGAGATTTTGTGAAGAAATTTTTCAAAAGCTAAAAAAAATGATTTCAGGCCAACGAGCTCTTCCAAAAGGGACCTATCATGGTTATGGCTGTGCGCCGCCCGGGATGCATGCTCTGCCGTCGCGAGGCTGCCGAATTGCACACCTTACTTCCACTTCTCAAAGAGAAGGGAATCGGATTGGTAGGAGGTATTCGAATTTGAGTCAAAATTCAGTTTAAGAATTTCAGGCTGCCGTTGTGCACGAATCCCGTGGCGCCAACGAATTCAAATCGTACTTCTCGGGAGGCGACGTCTATTTGGACACCGAGAGAACGTTCTACGGACCAAACGAGCGTTGGCTGCCCCATTGGGTCGGCTTCCTTCGTTTCGGAACCTACTCGAATGTCTATAAGGCRAAGAAGGCGAAGGTTGAAGGAAATATGGAGGGAGAAGGAAGACTTCTGGGAGGTAAATAGGAAGTTTTTAGAAAAAAGTGCTAGAATTCGGATTTTCAGGCGTCTACCTAATTGCCAACAACGACATCGTCTACACTCATCTGGAAAAGGAGTGGGGAGACGCCGCCAACATCGACGAAGTTCGTGCTGCCATTGAGACTTTCAATGTAAAGACTAAATAATTTTTTGCGATTGAACTTTGAAAAAAGACAATGTTTTACATGTAATTTAATGACCTCGATTCGAATTCTTTTGTGTACAGTGTTAACTTTTTACCTCAATAAATGTATAGAAACAGAAAAAGTGGAACAATTTAGAACTAAATTTTTTTTTCTTCGTTTTTTTGCAAAATTTTTAGACCTTTTTAGGATTTCCAGCTATTTTCAAAGATTCTCTCTCGATTTTTCCGAAGTTTTTGTCTGCAATTTGACGGGATGGTGTACGCGAGGGTTACTTTAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTTGGACACCGAGAGAA</pcr_primer_p1>
		<pcr_primer_p2>TTCCAGATGAGTGTAGACGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTATTTGGACACCGAGAGAACGTTCTACGGACCAAACGAGCGTTGGCTGCCCCATTGGGTCGGCTTCCTTCGTTTCGGAACCTACTCGAATGTCTATAAGGCAAAGAAGGCGAAGGTTGAAGGAAATATGGAGGGAGAAGGAAGACTTCTGGGAGGTAAATAGGAAGTTTTTAGAAAAAAGTGCTAGAATTCGGATTTTCAGGCGTCTACCTAATTGCCAACAACGACATCGTCTACACTCATCTGGAA</canonical_amplicon>
		<polymorphic_amplicon>CTATTTGGACACCGAGAGAACGTTCTACGGACCAAACGAGCGTTGGCTGCCCCATTGGGTCGGCTTCCTTCGTTTCGGAACCTACTCGAATGTCTATAAGGCRAAGAAGGCGAAGGTTGAAGGAAATATGGAGGGAGAAGGAAGACTTCTGGGAGGTAAATAGGAAGTTTTTAGAAAAAAGTGCTAGAATTCGGATTTTCAGGCGTCTACCTAATTGCCAACAACGACATCGTCTACACTCATCTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33846</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>333934</contig_pos>
        <strand>+</strand>
        <context>AGGAAGACTT[C/T]TGGGAGGTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGCAAAGAAGGCGAAGGTTGAAGGAAATATGGAGGGAGAAGGAAGACTT</left_flank>
        <right_flank>TGGGAGGTAAATAGGAAGTTTTTAGAAAAAAGTGCTAGAATTCGGATTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAATCAAAGGAGGGCCCAGAGAAATCGAGACTATTGATAAGAGCGAGCAGTTTACGGTGAGATTTTGTGAAGAAATTTTTCAAAAGCTAAAAAAAATGATTTCAGGCCAACGAGCTCTTCCAAAAGGGACCTATCATGGTTATGGCTGTGCGCCGCCCGGGATGCATGCTCTGCCGTCGCGAGGCTGCCGAATTGCACACCTTACTTCCACTTCTCAAAGAGAAGGGAATCGGATTGGTAGGAGGTATTCGAATTTGAGTCAAAATTCAGTTTAAGAATTTCAGGCTGCCGTTGTGCACGAATCCCGTGGCGCCAACGAATTCAAATCGTACTTCTCGGGAGGCGACGTCTATTTGGACACCGAGAGAACGTTCTACGGACCAAACGAGCGTTGGCTGCCCCATTGGGTCGGCTTCCTTCGTTTCGGAACCTACTCGAATGTCTATAAGGCAAAGAAGGCGAAGGTTGAAGGAAATATGGAGGGAGAAGGAAGACTTCTGGGAGGTAAATAGGAAGTTTTTAGAAAAAAGTGCTAGAATTCGGATTTTCAGGCGTCTACCTAATTGCCAACAACGACATCGTCTACACTCATCTGGAAAAGGAGTGGGGAGACGCCGCCAACATCGACGAAGTTCGTGCTGCCATTGAGACTTTCAATGTAAAGACTAAATAATTTTTTGCGATTGAACTTTGAAAAAAGACAATGTTTTACATGTAATTTAATGACCTCGATTCGAATTCTTTTGTGTACAGTGTTAACTTTTTACCTCAATAAATGTATAGAAACAGAAAAAGTGGAACAATTTAGAACTAAATTTTTTTTTCTTCGTTTTTTTGCAAAATTTTTAGACCTTTTTAGGATTTCCAGCTATTTTCAAAGATTCTCTCTCGATTTTTCCGAAGTTTTTGTCTGCAATTTGACGGGATGGTGTACGCGAGGGTTACTTTAGATTACTGTAGAAATCGTTCTATTTTGTAGTTTGTGGTCAAAAATTTTG</canonical>
            <polymorphic>TCCAATCAAAGGAGGGCCCAGAGAAATCGAGACTATTGATAAGAGCGAGCAGTTTACGGTGAGATTTTGTGAAGAAATTTTTCAAAAGCTAAAAAAAATGATTTCAGGCCAACGAGCTCTTCCAAAAGGGACCTATCATGGTTATGGCTGTGCGCCGCCCGGGATGCATGCTCTGCCGTCGCGAGGCTGCCGAATTGCACACCTTACTTCCACTTCTCAAAGAGAAGGGAATCGGATTGGTAGGAGGTATTCGAATTTGAGTCAAAATTCAGTTTAAGAATTTCAGGCTGCCGTTGTGCACGAATCCCGTGGCGCCAACGAATTCAAATCGTACTTCTCGGGAGGCGACGTCTATTTGGACACCGAGAGAACGTTCTACGGACCAAACGAGCGTTGGCTGCCCCATTGGGTCGGCTTCCTTCGTTTCGGAACCTACTCGAATGTCTATAAGGCAAAGAAGGCGAAGGTTGAAGGAAATATGGAGGGAGAAGGAAGACTTYTGGGAGGTAAATAGGAAGTTTTTAGAAAAAAGTGCTAGAATTCGGATTTTCAGGCGTCTACCTAATTGCCAACAACGACATCGTCTACACTCATCTGGAAAAGGAGTGGGGAGACGCCGCCAACATCGACGAAGTTCGTGCTGCCATTGAGACTTTCAATGTAAAGACTAAATAATTTTTTGCGATTGAACTTTGAAAAAAGACAATGTTTTACATGTAATTTAATGACCTCGATTCGAATTCTTTTGTGTACAGTGTTAACTTTTTACCTCAATAAATGTATAGAAACAGAAAAAGTGGAACAATTTAGAACTAAATTTTTTTTTCTTCGTTTTTTTGCAAAATTTTTAGACCTTTTTAGGATTTCCAGCTATTTTCAAAGATTCTCTCTCGATTTTTCCGAAGTTTTTGTCTGCAATTTGACGGGATGGTGTACGCGAGGGTTACTTTAGATTACTGTAGAAATCGTTCTATTTTGTAGTTTGTGGTCAAAAATTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTTGGACACCGAGAGAA</pcr_primer_p1>
		<pcr_primer_p2>TTCCAGATGAGTGTAGACGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTATTTGGACACCGAGAGAACGTTCTACGGACCAAACGAGCGTTGGCTGCCCCATTGGGTCGGCTTCCTTCGTTTCGGAACCTACTCGAATGTCTATAAGGCAAAGAAGGCGAAGGTTGAAGGAAATATGGAGGGAGAAGGAAGACTTCTGGGAGGTAAATAGGAAGTTTTTAGAAAAAAGTGCTAGAATTCGGATTTTCAGGCGTCTACCTAATTGCCAACAACGACATCGTCTACACTCATCTGGAA</canonical_amplicon>
		<polymorphic_amplicon>CTATTTGGACACCGAGAGAACGTTCTACGGACCAAACGAGCGTTGGCTGCCCCATTGGGTCGGCTTCCTTCGTTTCGGAACCTACTCGAATGTCTATAAGGCAAAGAAGGCGAAGGTTGAAGGAAATATGGAGGGAGAAGGAAGACTTYTGGGAGGTAAATAGGAAGTTTTTAGAAAAAAGTGCTAGAATTCGGATTTTCAGGCGTCTACCTAATTGCCAACAACGACATCGTCTACACTCATCTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33847</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>333973</contig_pos>
        <strand>+</strand>
        <context>AAAGTGCTAG[A/G]ATTCGGATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGGAAGACTTCTGGGAGGTAAATAGGAAGTTTTTAGAAAAAAGTGCTAG</left_flank>
        <right_flank>ATTCGGATTTTCAGGCGTCTACCTAATTGCCAACAACGACATCGTCTACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAGAGCGAGCAGTTTACGGTGAGATTTTGTGAAGAAATTTTTCAAAAGCTAAAAAAAATGATTTCAGGCCAACGAGCTCTTCCAAAAGGGACCTATCATGGTTATGGCTGTGCGCCGCCCGGGATGCATGCTCTGCCGTCGCGAGGCTGCCGAATTGCACACCTTACTTCCACTTCTCAAAGAGAAGGGAATCGGATTGGTAGGAGGTATTCGAATTTGAGTCAAAATTCAGTTTAAGAATTTCAGGCTGCCGTTGTGCACGAATCCCGTGGCGCCAACGAATTCAAATCGTACTTCTCGGGAGGCGACGTCTATTTGGACACCGAGAGAACGTTCTACGGACCAAACGAGCGTTGGCTGCCCCATTGGGTCGGCTTCCTTCGTTTCGGAACCTACTCGAATGTCTATAAGGCAAAGAAGGCGAAGGTTGAAGGAAATATGGAGGGAGAAGGAAGACTTCTGGGAGGTAAATAGGAAGTTTTTAGAAAAAAGTGCTAGAATTCGGATTTTCAGGCGTCTACCTAATTGCCAACAACGACATCGTCTACACTCATCTGGAAAAGGAGTGGGGAGACGCCGCCAACATCGACGAAGTTCGTGCTGCCATTGAGACTTTCAATGTAAAGACTAAATAATTTTTTGCGATTGAACTTTGAAAAAAGACAATGTTTTACATGTAATTTAATGACCTCGATTCGAATTCTTTTGTGTACAGTGTTAACTTTTTACCTCAATAAATGTATAGAAACAGAAAAAGTGGAACAATTTAGAACTAAATTTTTTTTTCTTCGTTTTTTTGCAAAATTTTTAGACCTTTTTAGGATTTCCAGCTATTTTCAAAGATTCTCTCTCGATTTTTCCGAAGTTTTTGTCTGCAATTTGACGGGATGGTGTACGCGAGGGTTACTTTAGATTACTGTAGAAATCGTTCTATTTTGTAGTTTGTGGTCAAAAATTTTGACGTGATTGTGTTTGAAAAAAACTACAAGAGAAAATTCG</canonical>
            <polymorphic>TAAGAGCGAGCAGTTTACGGTGAGATTTTGTGAAGAAATTTTTCAAAAGCTAAAAAAAATGATTTCAGGCCAACGAGCTCTTCCAAAAGGGACCTATCATGGTTATGGCTGTGCGCCGCCCGGGATGCATGCTCTGCCGTCGCGAGGCTGCCGAATTGCACACCTTACTTCCACTTCTCAAAGAGAAGGGAATCGGATTGGTAGGAGGTATTCGAATTTGAGTCAAAATTCAGTTTAAGAATTTCAGGCTGCCGTTGTGCACGAATCCCGTGGCGCCAACGAATTCAAATCGTACTTCTCGGGAGGCGACGTCTATTTGGACACCGAGAGAACGTTCTACGGACCAAACGAGCGTTGGCTGCCCCATTGGGTCGGCTTCCTTCGTTTCGGAACCTACTCGAATGTCTATAAGGCAAAGAAGGCGAAGGTTGAAGGAAATATGGAGGGAGAAGGAAGACTTCTGGGAGGTAAATAGGAAGTTTTTAGAAAAAAGTGCTAGRATTCGGATTTTCAGGCGTCTACCTAATTGCCAACAACGACATCGTCTACACTCATCTGGAAAAGGAGTGGGGAGACGCCGCCAACATCGACGAAGTTCGTGCTGCCATTGAGACTTTCAATGTAAAGACTAAATAATTTTTTGCGATTGAACTTTGAAAAAAGACAATGTTTTACATGTAATTTAATGACCTCGATTCGAATTCTTTTGTGTACAGTGTTAACTTTTTACCTCAATAAATGTATAGAAACAGAAAAAGTGGAACAATTTAGAACTAAATTTTTTTTTCTTCGTTTTTTTGCAAAATTTTTAGACCTTTTTAGGATTTCCAGCTATTTTCAAAGATTCTCTCTCGATTTTTCCGAAGTTTTTGTCTGCAATTTGACGGGATGGTGTACGCGAGGGTTACTTTAGATTACTGTAGAAATCGTTCTATTTTGTAGTTTGTGGTCAAAAATTTTGACGTGATTGTGTTTGAAAAAAACTACAAGAGAAAATTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>218 200 178 151 77 42 40 36 27 13 12 6</canonical_bands>
                <polymorphic_bands>418 178 151 77 42 40 36 27 13 12 6</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>301 281 218 200</canonical_bands>
                <polymorphic_bands>418 301 281</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>218 117 110 77 74 65 61 45 42 40 36 27 25 20 13 12 12 6</canonical_bands>
                <polymorphic_bands>243 117 110 77 74 65 61 45 42 40 36 27 20 13 12 12 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTTGGACACCGAGAGAA</pcr_primer_p1>
		<pcr_primer_p2>TTCCAGATGAGTGTAGACGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTATTTGGACACCGAGAGAACGTTCTACGGACCAAACGAGCGTTGGCTGCCCCATTGGGTCGGCTTCCTTCGTTTCGGAACCTACTCGAATGTCTATAAGGCAAAGAAGGCGAAGGTTGAAGGAAATATGGAGGGAGAAGGAAGACTTCTGGGAGGTAAATAGGAAGTTTTTAGAAAAAAGTGCTAGAATTCGGATTTTCAGGCGTCTACCTAATTGCCAACAACGACATCGTCTACACTCATCTGGAA</canonical_amplicon>
		<polymorphic_amplicon>CTATTTGGACACCGAGAGAACGTTCTACGGACCAAACGAGCGTTGGCTGCCCCATTGGGTCGGCTTCCTTCGTTTCGGAACCTACTCGAATGTCTATAAGGCAAAGAAGGCGAAGGTTGAAGGAAATATGGAGGGAGAAGGAAGACTTCTGGGAGGTAAATAGGAAGTTTTTAGAAAAAAGTGCTAGRATTCGGATTTTCAGGCGTCTACCTAATTGCCAACAACGACATCGTCTACACTCATCTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33848</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>334097</contig_pos>
        <strand>+</strand>
        <context>CTTTCAATGT[A/C]AAGACTAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GACGCCGCCAACATCGACGAAGTTCGTGCTGCCATTGAGACTTTCAATGT</left_flank>
        <right_flank>AAGACTAAATAATTTTTTGCGATTGAACTTTGAAAAAAGACAATGTTTTA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCATGCTCTGCCGTCGCGAGGCTGCCGAATTGCACACCTTACTTCCACTTCTCAAAGAGAAGGGAATCGGATTGGTAGGAGGTATTCGAATTTGAGTCAAAATTCAGTTTAAGAATTTCAGGCTGCCGTTGTGCACGAATCCCGTGGCGCCAACGAATTCAAATCGTACTTCTCGGGAGGCGACGTCTATTTGGACACCGAGAGAACGTTCTACGGACCAAACGAGCGTTGGCTGCCCCATTGGGTCGGCTTCCTTCGTTTCGGAACCTACTCGAATGTCTATAAGGCAAAGAAGGCGAAGGTTGAAGGAAATATGGAGGGAGAAGGAAGACTTCTGGGAGGTAAATAGGAAGTTTTTAGAAAAAAGTGCTAGAATTCGGATTTTCAGGCGTCTACCTAATTGCCAACAACGACATCGTCTACACTCATCTGGAAAAGGAGTGGGGAGACGCCGCCAACATCGACGAAGTTCGTGCTGCCATTGAGACTTTCAATGTAAAGACTAAATAATTTTTTGCGATTGAACTTTGAAAAAAGACAATGTTTTACATGTAATTTAATGACCTCGATTCGAATTCTTTTGTGTACAGTGTTAACTTTTTACCTCAATAAATGTATAGAAACAGAAAAAGTGGAACAATTTAGAACTAAATTTTTTTTTCTTCGTTTTTTTGCAAAATTTTTAGACCTTTTTAGGATTTCCAGCTATTTTCAAAGATTCTCTCTCGATTTTTCCGAAGTTTTTGTCTGCAATTTGACGGGATGGTGTACGCGAGGGTTACTTTAGATTACTGTAGAAATCGTTCTATTTTGTAGTTTGTGGTCAAAAATTTTGACGTGATTGTGTTTGAAAAAAACTACAAGAGAAAATTCGCTTTCTACAGTAATCTACAGTAATCAAACACCGTTCCATCAAATTTCCGACAAAAAACCGGAAAATCGAAAAAGAATCTTCGAAAATAGCTCAAAAAAACCTGAAAAGGCCTAAAAATTTTTGC</canonical>
            <polymorphic>ATGCATGCTCTGCCGTCGCGAGGCTGCCGAATTGCACACCTTACTTCCACTTCTCAAAGAGAAGGGAATCGGATTGGTAGGAGGTATTCGAATTTGAGTCAAAATTCAGTTTAAGAATTTCAGGCTGCCGTTGTGCACGAATCCCGTGGCGCCAACGAATTCAAATCGTACTTCTCGGGAGGCGACGTCTATTTGGACACCGAGAGAACGTTCTACGGACCAAACGAGCGTTGGCTGCCCCATTGGGTCGGCTTCCTTCGTTTCGGAACCTACTCGAATGTCTATAAGGCAAAGAAGGCGAAGGTTGAAGGAAATATGGAGGGAGAAGGAAGACTTCTGGGAGGTAAATAGGAAGTTTTTAGAAAAAAGTGCTAGAATTCGGATTTTCAGGCGTCTACCTAATTGCCAACAACGACATCGTCTACACTCATCTGGAAAAGGAGTGGGGAGACGCCGCCAACATCGACGAAGTTCGTGCTGCCATTGAGACTTTCAATGTMAAGACTAAATAATTTTTTGCGATTGAACTTTGAAAAAAGACAATGTTTTACATGTAATTTAATGACCTCGATTCGAATTCTTTTGTGTACAGTGTTAACTTTTTACCTCAATAAATGTATAGAAACAGAAAAAGTGGAACAATTTAGAACTAAATTTTTTTTTCTTCGTTTTTTTGCAAAATTTTTAGACCTTTTTAGGATTTCCAGCTATTTTCAAAGATTCTCTCTCGATTTTTCCGAAGTTTTTGTCTGCAATTTGACGGGATGGTGTACGCGAGGGTTACTTTAGATTACTGTAGAAATCGTTCTATTTTGTAGTTTGTGGTCAAAAATTTTGACGTGATTGTGTTTGAAAAAAACTACAAGAGAAAATTCGCTTTCTACAGTAATCTACAGTAATCAAACACCGTTCCATCAAATTTCCGACAAAAAACCGGAAAATCGAAAAAGAATCTTCGAAAATAGCTCAAAAAAACCTGAAAAGGCCTAAAAATTTTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAATTGCCAACAACGACAT</pcr_primer_p1>
		<pcr_primer_p2>TCTAAATTGTTCCACTTTTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAATTGCCAACAACGACATCGTCTACACTCATCTGGAAAAGGAGTGGGGAGACGCCGCCAACATCGACGAAGTTCGTGCTGCCATTGAGACTTTCAATGTAAAGACTAAATAATTTTTTGCGATTGAACTTTGAAAAAAGACAATGTTTTACATGTAATTTAATGACCTCGATTCGAATTCTTTTGTGTACAGTGTTAACTTTTTACCTCAATAAATGTATAGAAACAGAAAAAGTGGAACAATTTAGA</canonical_amplicon>
		<polymorphic_amplicon>CTAATTGCCAACAACGACATCGTCTACACTCATCTGGAAAAGGAGTGGGGAGACGCCGCCAACATCGACGAAGTTCGTGCTGCCATTGAGACTTTCAATGTMAAGACTAAATAATTTTTTGCGATTGAACTTTGAAAAAAGACAATGTTTTACATGTAATTTAATGACCTCGATTCGAATTCTTTTGTGTACAGTGTTAACTTTTTACCTCAATAAATGTATAGAAACAGAAAAAGTGGAACAATTTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33849</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>334136</contig_pos>
        <strand>+</strand>
        <context>TTTGAAAAAA[G/T]ACAATGTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTTTCAATGTAAAGACTAAATAATTTTTTGCGATTGAACTTTGAAAAAA</left_flank>
        <right_flank>ACAATGTTTTACATGTAATTTAATGACCTCGATTCGAATTCTTTTGTGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTACTTCCACTTCTCAAAGAGAAGGGAATCGGATTGGTAGGAGGTATTCGAATTTGAGTCAAAATTCAGTTTAAGAATTTCAGGCTGCCGTTGTGCACGAATCCCGTGGCGCCAACGAATTCAAATCGTACTTCTCGGGAGGCGACGTCTATTTGGACACCGAGAGAACGTTCTACGGACCAAACGAGCGTTGGCTGCCCCATTGGGTCGGCTTCCTTCGTTTCGGAACCTACTCGAATGTCTATAAGGCAAAGAAGGCGAAGGTTGAAGGAAATATGGAGGGAGAAGGAAGACTTCTGGGAGGTAAATAGGAAGTTTTTAGAAAAAAGTGCTAGAATTCGGATTTTCAGGCGTCTACCTAATTGCCAACAACGACATCGTCTACACTCATCTGGAAAAGGAGTGGGGAGACGCCGCCAACATCGACGAAGTTCGTGCTGCCATTGAGACTTTCAATGTAAAGACTAAATAATTTTTTGCGATTGAACTTTGAAAAAAGACAATGTTTTACATGTAATTTAATGACCTCGATTCGAATTCTTTTGTGTACAGTGTTAACTTTTTACCTCAATAAATGTATAGAAACAGAAAAAGTGGAACAATTTAGAACTAAATTTTTTTTTCTTCGTTTTTTTGCAAAATTTTTAGACCTTTTTAGGATTTCCAGCTATTTTCAAAGATTCTCTCTCGATTTTTCCGAAGTTTTTGTCTGCAATTTGACGGGATGGTGTACGCGAGGGTTACTTTAGATTACTGTAGAAATCGTTCTATTTTGTAGTTTGTGGTCAAAAATTTTGACGTGATTGTGTTTGAAAAAAACTACAAGAGAAAATTCGCTTTCTACAGTAATCTACAGTAATCAAACACCGTTCCATCAAATTTCCGACAAAAAACCGGAAAATCGAAAAAGAATCTTCGAAAATAGCTCAAAAAAACCTGAAAAGGCCTAAAAATTTTTGCAGATAATTGGAGGAAAAAAATCAATTTTTCTTTCGAAAA</canonical>
            <polymorphic>CTTACTTCCACTTCTCAAAGAGAAGGGAATCGGATTGGTAGGAGGTATTCGAATTTGAGTCAAAATTCAGTTTAAGAATTTCAGGCTGCCGTTGTGCACGAATCCCGTGGCGCCAACGAATTCAAATCGTACTTCTCGGGAGGCGACGTCTATTTGGACACCGAGAGAACGTTCTACGGACCAAACGAGCGTTGGCTGCCCCATTGGGTCGGCTTCCTTCGTTTCGGAACCTACTCGAATGTCTATAAGGCAAAGAAGGCGAAGGTTGAAGGAAATATGGAGGGAGAAGGAAGACTTCTGGGAGGTAAATAGGAAGTTTTTAGAAAAAAGTGCTAGAATTCGGATTTTCAGGCGTCTACCTAATTGCCAACAACGACATCGTCTACACTCATCTGGAAAAGGAGTGGGGAGACGCCGCCAACATCGACGAAGTTCGTGCTGCCATTGAGACTTTCAATGTAAAGACTAAATAATTTTTTGCGATTGAACTTTGAAAAAAKACAATGTTTTACATGTAATTTAATGACCTCGATTCGAATTCTTTTGTGTACAGTGTTAACTTTTTACCTCAATAAATGTATAGAAACAGAAAAAGTGGAACAATTTAGAACTAAATTTTTTTTTCTTCGTTTTTTTGCAAAATTTTTAGACCTTTTTAGGATTTCCAGCTATTTTCAAAGATTCTCTCTCGATTTTTCCGAAGTTTTTGTCTGCAATTTGACGGGATGGTGTACGCGAGGGTTACTTTAGATTACTGTAGAAATCGTTCTATTTTGTAGTTTGTGGTCAAAAATTTTGACGTGATTGTGTTTGAAAAAAACTACAAGAGAAAATTCGCTTTCTACAGTAATCTACAGTAATCAAACACCGTTCCATCAAATTTCCGACAAAAAACCGGAAAATCGAAAAAGAATCTTCGAAAATAGCTCAAAAAAACCTGAAAAGGCCTAAAAATTTTTGCAGATAATTGGAGGAAAAAAATCAATTTTTCTTTCGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAATTGCCAACAACGACAT</pcr_primer_p1>
		<pcr_primer_p2>TCTAAATTGTTCCACTTTTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAATTGCCAACAACGACATCGTCTACACTCATCTGGAAAAGGAGTGGGGAGACGCCGCCAACATCGACGAAGTTCGTGCTGCCATTGAGACTTTCAATGTAAAGACTAAATAATTTTTTGCGATTGAACTTTGAAAAAAGACAATGTTTTACATGTAATTTAATGACCTCGATTCGAATTCTTTTGTGTACAGTGTTAACTTTTTACCTCAATAAATGTATAGAAACAGAAAAAGTGGAACAATTTAGA</canonical_amplicon>
		<polymorphic_amplicon>CTAATTGCCAACAACGACATCGTCTACACTCATCTGGAAAAGGAGTGGGGAGACGCCGCCAACATCGACGAAGTTCGTGCTGCCATTGAGACTTTCAATGTAAAGACTAAATAATTTTTTGCGATTGAACTTTGAAAAAAKACAATGTTTTACATGTAATTTAATGACCTCGATTCGAATTCTTTTGTGTACAGTGTTAACTTTTTACCTCAATAAATGTATAGAAACAGAAAAAGTGGAACAATTTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33850</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>336652</contig_pos>
        <strand>+</strand>
        <context>GGGGATGCAC[G/T]AGTTATCATG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAAACAGATTGTTTTCACGGAGGAGAATGTGAAAGCAAATGGGGATGCAC</left_flank>
        <right_flank>AGTTATCATGTGCATTGATGATAAGACAATGATGGATACGGTAGTGGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTAATGTTTTCAAATTTCCGTAAAACCTCTAATACAAGGGCCCTAACAATGTCAAGTTTGAGCCAACAACCAATAACCCAGACTTGAATTCACCGTAATCGATTCCATTTCCTCTAACAGAAGCCCACCCAAACTGTCAACTTTGAGAGTCAATTAACTTGATTCTAGCGCAATATGTCAAAAATGTGTCAACTGATATCATGTTGGTGATTTTATGACATACAATTTATCAGTTGACAGCTTACTCATATCTTTAAAATATTTCTTAAAATATTTCCAGCATTGGAAAGCCACTTCACATGAGCAACGGGCTATTGGCTTTGAGATCAACTTGAAGACCTTTGAGGACTACAAGACAAATATCAAAACGTGGGCCCCACACAGCTACCATAAGCCGCAATTCGGGTTCCCACCAAGCAAAGTGTTCTGTGTGGATTTCCATTCTGACAAACAGATTGTTTTCACGGAGGAGAATGTGAAAGCAAATGGGGATGCACTAGTTATCATGTGCATTGATGATAAGACAATGATGGATACGGTAGTGGAGATGTTCGGGAAGCTTCAAGGATTCGTGGCAAATTTGAGAGGGGACAAGAAGACGTTATCTAAATGAGGAGCTATTTTCTTTTTTTTTCTTTCTGTTCAGATAAAAACTTGGTCTGATTTTGGAGTGGCTGAAATAGTACAATGTCTTTTTTACAACAAATAACTTATGAGCTTCGTTTTTCTAGTTGACAACTTTTTTGTAAAATTTATCCCAAACGAGATATGAAGCAAGAAAGAAAACAAACTTTGAGCTCAATTTTCTCAATTCCTGTGGAAGATATCAAAAAGTGGTCAACTGATAAATTGTTCATCATAATAACACCAACATTTTATTAGTTAACAATTTTTTATATCTTTTACAGAAACCGAGATAAAGAGTAGGGAAGACAAACCAAGTTACAATAAACATTCTAACAGAAGGCCACCCTACAATTTCACTTTGAGCTCATTTA</canonical>
            <polymorphic>TATTAATGTTTTCAAATTTCCGTAAAACCTCTAATACAAGGGCCCTAACAATGTCAAGTTTGAGCCAACAACCAATAACCCAGACTTGAATTCACCGTAATCGATTCCATTTCCTCTAACAGAAGCCCACCCAAACTGTCAACTTTGAGAGTCAATTAACTTGATTCTAGCGCAATATGTCAAAAATGTGTCAACTGATATCATGTTGGTGATTTTATGACATACAATTTATCAGTTGACAGCTTACTCATATCTTTAAAATATTTCTTAAAATATTTCCAGCATTGGAAAGCCACTTCACATGAGCAACGGGCTATTGGCTTTGAGATCAACTTGAAGACCTTTGAGGACTACAAGACAAATATCAAAACGTGGGCCCCACACAGCTACCATAAGCCGCAATTCGGGTTCCCACCAAGCAAAGTGTTCTGTGTGGATTTCCATTCTGACAAACAGATTGTTTTCACGGAGGAGAATGTGAAAGCAAATGGGGATGCACKAGTTATCATGTGCATTGATGATAAGACAATGATGGATACGGTAGTGGAGATGTTCGGGAAGCTTCAAGGATTCGTGGCAAATTTGAGAGGGGACAAGAAGACGTTATCTAAATGAGGAGCTATTTTCTTTTTTTTTCTTTCTGTTCAGATAAAAACTTGGTCTGATTTTGGAGTGGCTGAAATAGTACAATGTCTTTTTTACAACAAATAACTTATGAGCTTCGTTTTTCTAGTTGACAACTTTTTTGTAAAATTTATCCCAAACGAGATATGAAGCAAGAAAGAAAACAAACTTTGAGCTCAATTTTCTCAATTCCTGTGGAAGATATCAAAAAGTGGTCAACTGATAAATTGTTCATCATAATAACACCAACATTTTATTAGTTAACAATTTTTTATATCTTTTACAGAAACCGAGATAAAGAGTAGGGAAGACAAACCAAGTTACAATAAACATTCTAACAGAAGGCCACCCTACAATTTCACTTTGAGCTCATTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACTAGT</site>
                <isoschizomers>
                    <enzyme>AhlI</enzyme>
                    <enzyme>BcuI</enzyme>
                    <enzyme>SpeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>332 270 231 167</canonical_bands>
                <polymorphic_bands>563 270 167</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAGTGTTCTGTGTGGATTT</pcr_primer_p1>
		<pcr_primer_p2>TCAGACCAAGTTTTTATCTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAAAGTGTTCTGTGTGGATTTCCATTCTGACAAACAGATTGTTTTCACGGAGGAGAATGTGAAAGCAAATGGGGATGCACTAGTTATCATGTGCATTGATGATAAGACAATGATGGATACGGTAGTGGAGATGTTCGGGAAGCTTCAAGGATTCGTGGCAAATTTGAGAGGGGACAAGAAGACGTTATCTAAATGAGGAGCTATTTTCTTTTTTTTTCTTTCTGTTCAGATAAAAACTTGGTCTGA</canonical_amplicon>
		<polymorphic_amplicon>CAAAGTGTTCTGTGTGGATTTCCATTCTGACAAACAGATTGTTTTCACGGAGGAGAATGTGAAAGCAAATGGGGATGCACKAGTTATCATGTGCATTGATGATAAGACAATGATGGATACGGTAGTGGAGATGTTCGGGAAGCTTCAAGGATTCGTGGCAAATTTGAGAGGGGACAAGAAGACGTTATCTAAATGAGGAGCTATTTTCTTTTTTTTTCTTTCTGTTCAGATAAAAACTTGGTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33851</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>336671</contig_pos>
        <strand>+</strand>
        <context>TGTGCATTGA[G/T]GATAAGACAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAGGAGAATGTGAAAGCAAATGGGGATGCACTAGTTATCATGTGCATTGA</left_flank>
        <right_flank>GATAAGACAATGATGGATACGGTAGTGGAGATGTTCGGGAAGCTTCAAGG</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGTAAAACCTCTAATACAAGGGCCCTAACAATGTCAAGTTTGAGCCAACAACCAATAACCCAGACTTGAATTCACCGTAATCGATTCCATTTCCTCTAACAGAAGCCCACCCAAACTGTCAACTTTGAGAGTCAATTAACTTGATTCTAGCGCAATATGTCAAAAATGTGTCAACTGATATCATGTTGGTGATTTTATGACATACAATTTATCAGTTGACAGCTTACTCATATCTTTAAAATATTTCTTAAAATATTTCCAGCATTGGAAAGCCACTTCACATGAGCAACGGGCTATTGGCTTTGAGATCAACTTGAAGACCTTTGAGGACTACAAGACAAATATCAAAACGTGGGCCCCACACAGCTACCATAAGCCGCAATTCGGGTTCCCACCAAGCAAAGTGTTCTGTGTGGATTTCCATTCTGACAAACAGATTGTTTTCACGGAGGAGAATGTGAAAGCAAATGGGGATGCACTAGTTATCATGTGCATTGATGATAAGACAATGATGGATACGGTAGTGGAGATGTTCGGGAAGCTTCAAGGATTCGTGGCAAATTTGAGAGGGGACAAGAAGACGTTATCTAAATGAGGAGCTATTTTCTTTTTTTTTCTTTCTGTTCAGATAAAAACTTGGTCTGATTTTGGAGTGGCTGAAATAGTACAATGTCTTTTTTACAACAAATAACTTATGAGCTTCGTTTTTCTAGTTGACAACTTTTTTGTAAAATTTATCCCAAACGAGATATGAAGCAAGAAAGAAAACAAACTTTGAGCTCAATTTTCTCAATTCCTGTGGAAGATATCAAAAAGTGGTCAACTGATAAATTGTTCATCATAATAACACCAACATTTTATTAGTTAACAATTTTTTATATCTTTTACAGAAACCGAGATAAAGAGTAGGGAAGACAAACCAAGTTACAATAAACATTCTAACAGAAGGCCACCCTACAATTTCACTTTGAGCTCATTTATCTCACTTCCTAAAATAGA</canonical>
            <polymorphic>CCGTAAAACCTCTAATACAAGGGCCCTAACAATGTCAAGTTTGAGCCAACAACCAATAACCCAGACTTGAATTCACCGTAATCGATTCCATTTCCTCTAACAGAAGCCCACCCAAACTGTCAACTTTGAGAGTCAATTAACTTGATTCTAGCGCAATATGTCAAAAATGTGTCAACTGATATCATGTTGGTGATTTTATGACATACAATTTATCAGTTGACAGCTTACTCATATCTTTAAAATATTTCTTAAAATATTTCCAGCATTGGAAAGCCACTTCACATGAGCAACGGGCTATTGGCTTTGAGATCAACTTGAAGACCTTTGAGGACTACAAGACAAATATCAAAACGTGGGCCCCACACAGCTACCATAAGCCGCAATTCGGGTTCCCACCAAGCAAAGTGTTCTGTGTGGATTTCCATTCTGACAAACAGATTGTTTTCACGGAGGAGAATGTGAAAGCAAATGGGGATGCACTAGTTATCATGTGCATTGAKGATAAGACAATGATGGATACGGTAGTGGAGATGTTCGGGAAGCTTCAAGGATTCGTGGCAAATTTGAGAGGGGACAAGAAGACGTTATCTAAATGAGGAGCTATTTTCTTTTTTTTTCTTTCTGTTCAGATAAAAACTTGGTCTGATTTTGGAGTGGCTGAAATAGTACAATGTCTTTTTTACAACAAATAACTTATGAGCTTCGTTTTTCTAGTTGACAACTTTTTTGTAAAATTTATCCCAAACGAGATATGAAGCAAGAAAGAAAACAAACTTTGAGCTCAATTTTCTCAATTCCTGTGGAAGATATCAAAAAGTGGTCAACTGATAAATTGTTCATCATAATAACACCAACATTTTATTAGTTAACAATTTTTTATATCTTTTACAGAAACCGAGATAAAGAGTAGGGAAGACAAACCAAGTTACAATAAACATTCTAACAGAAGGCCACCCTACAATTTCACTTTGAGCTCATTTATCTCACTTCCTAAAATAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAGTGTTCTGTGTGGATTT</pcr_primer_p1>
		<pcr_primer_p2>TCAGACCAAGTTTTTATCTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAAAGTGTTCTGTGTGGATTTCCATTCTGACAAACAGATTGTTTTCACGGAGGAGAATGTGAAAGCAAATGGGGATGCACTAGTTATCATGTGCATTGATGATAAGACAATGATGGATACGGTAGTGGAGATGTTCGGGAAGCTTCAAGGATTCGTGGCAAATTTGAGAGGGGACAAGAAGACGTTATCTAAATGAGGAGCTATTTTCTTTTTTTTTCTTTCTGTTCAGATAAAAACTTGGTCTGA</canonical_amplicon>
		<polymorphic_amplicon>CAAAGTGTTCTGTGTGGATTTCCATTCTGACAAACAGATTGTTTTCACGGAGGAGAATGTGAAAGCAAATGGGGATGCACTAGTTATCATGTGCATTGAKGATAAGACAATGATGGATACGGTAGTGGAGATGTTCGGGAAGCTTCAAGGATTCGTGGCAAATTTGAGAGGGGACAAGAAGACGTTATCTAAATGAGGAGCTATTTTCTTTTTTTTTCTTTCTGTTCAGATAAAAACTTGGTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33852</snp_id>
        <super_contig>c008501090.Contig1</super_contig>
        <contig_pos>337191</contig_pos>
        <strand></strand>
        <context>tttgtcaact[G/A]ataaaatgtt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGAGCTCATTTATCTCACTTCCTAAAATAGATATTAAAAATTTGTCAACT</left_flank>
        <right_flank>ATAAAATGTTTATCATAATATCACCAGCGTTTTATCAGTTGACTACTTTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTAGTGGAGATGTTCGGGAAGCTTCAAGGATTCGTGGCAAATTTGAGAGGGGACAAGAAGACGTTATCTAAATGAGGAGCTATTTTCTTTTTTTTTCTTTCTGTTCAGATAAAAACTTGGTCTGATTTTGGAGTGGCTGAAATAGTACAATGTCTTTTTTACAACAAATAACTTATGAGCTTCGTTTTTCTAGTTGACAACTTTTTTGTAAAATTTATCCCAAACGAGATATGAAGCAAGAAAGAAAACAAACTTTGAGCTCAATTTTCTCAATTCCTGTGGAAGATATCAAAAAGTGGTCAACTGATAAATTGTTCATCATAATAACACCAACATTTTATTAGTTAACAATTTTTTATATCTTTTACAGAAACCGAGATAAAGAGTAGGGAAGACAAACCAAGTTACAATAAACATTCTAACAGAAGGCCACCCTACAATTTCACTTTGAGCTCATTTATCTCACTTCCTAAAATAGATATTAAAAATTTGTCAACTGATAAAATGTTTATCATAATATCACCAGCGTTTTATCAGTTGACTACTTTTTGACGTCATTTACCGGAAATGAGATAGATGGACTCAAAGTGAAGTGATCCCTGATCCCTTTCCACTCCCACAATCCTTATCATTATCCCACGCCCCAACAAAAAAGGTTTGTTGTTGATGCCTTCAAATCTTCCCACACAAATCTCTTCCGATTCAAATGCATTTTTTTGTTGTCATTCCGTTTCTATGGAGATTTCTCATGGATGCTGAACACACGAGGGCATGCCACCTGCTTTAGCACCTGCTTATTTACCTAATTTGGTGTTTTTTTTTTGCTCTCCTTTATTCGGAATTCCAAAATTTAATATATTTCAGCTGTCCAAATGGACCCGCTAGTTCAGCATCCAGAGCTGCGACCAATCAAAGCACACATTCCGCTTAGACTCAAAAAAGTCTCTATTGAGGGAGCCAAAATTCTGATTAACAAGGACCAGCTGATTGTGGAGATCA</canonical>
            <polymorphic>GGTAGTGGAGATGTTCGGGAAGCTTCAAGGATTCGTGGCAAATTTGAGAGGGGACAAGAAGACGTTATCTAAATGAGGAGCTATTTTCTTTTTTTTTCTTTCTGTTCAGATAAAAACTTGGTCTGATTTTGGAGTGGCTGAAATAGTACAATGTCTTTTTTACAACAAATAACTTATGAGCTTCGTTTTTCTAGTTGACAACTTTTTTGTAAAATTTATCCCAAACGAGATATGAAGCAAGAAAGAAAACAAACTTTGAGCTCAATTTTCTCAATTCCTGTGGAAGATATCAAAAAGTGGTCAACTGATAAATTGTTCATCATAATAACACCAACATTTTATTAGTTAACAATTTTTTATATCTTTTACAGAAACCGAGATAAAGAGTAGGGAAGACAAACCAAGTTACAATAAACATTCTAACAGAAGGCCACCCTACAATTTCACTTTGAGCTCATTTATCTCACTTCCTAAAATAGATATTAAAAATTTGTCAACTRATAAAATGTTTATCATAATATCACCAGCGTTTTATCAGTTGACTACTTTTTGACGTCATTTACCGGAAATGAGATAGATGGACTCAAAGTGAAGTGATCCCTGATCCCTTTCCACTCCCACAATCCTTATCATTATCCCACGCCCCAACAAAAAAGGTTTGTTGTTGATGCCTTCAAATCTTCCCACACAAATCTCTTCCGATTCAAATGCATTTTTTTGTTGTCATTCCGTTTCTATGGAGATTTCTCATGGATGCTGAACACACGAGGGCATGCCACCTGCTTTAGCACCTGCTTATTTACCTAATTTGGTGTTTTTTTTTTGCTCTCCTTTATTCGGAATTCCAAAATTTAATATATTTCAGCTGTCCAAATGGACCCGCTAGTTCAGCATCCAGAGCTGCGACCAATCAAAGCACACATTCCGCTTAGACTCAAAAAAGTCTCTATTGAGGGAGCCAAAATTCTGATTAACAAGGACCAGCTGATTGTGGAGATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGGGAAGACAAACCAAGTTAC</pcr_primer_p1>
		<pcr_primer_p2>ATAATGATAAGGATTGTGGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAGGGAAGACAAACCAAGTTACAATAAACATTCTAACAGAAGGCCACCCTACAATTTCACTTTGAGCTCATTTATCTCACTTCCTAAAATAGATATTAAAAATTTGTCAACTGATAAAATGTTTATCATAATATCACCAGCGTTTTATCAGTTGACTACTTTTTGACGTCATTTACCGGAAATGAGATAGATGGACTCAAAGTGAAGTGATCCCTGATCCCTTTCCACTCCCACAATCCTTATCATTAT</canonical_amplicon>
		<polymorphic_amplicon>GTAGGGAAGACAAACCAAGTTACAATAAACATTCTAACAGAAGGCCACCCTACAATTTCACTTTGAGCTCATTTATCTCACTTCCTAAAATAGATATTAAAAATTTGTCAACTRATAAAATGTTTATCATAATATCACCAGCGTTTTATCAGTTGACTACTTTTTGACGTCATTTACCGGAAATGAGATAGATGGACTCAAAGTGAAGTGATCCCTGATCCCTTTCCACTCCCACAATCCTTATCATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33853</snp_id>
        <super_contig>c008601274.Contig1</super_contig>
        <contig_pos>34477</contig_pos>
        <strand>+</strand>
        <context>CTTGAAAAAT[G/T]CGTGAGAATG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAGTTCAGCACATTTTCAGCTTCAAAATGAGACAAAATTCTTGAAAAAT</left_flank>
        <right_flank>CGTGAGAATGAAGAAGTTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGGCACCAAGACTTTCCGGCGGCCAGGACGAACGCGCCGCTGAATTTGTTGAATTTGAATCTGGAAAATGAAATGGATTTGGCACATTTTGAGCTTTAAAATGAGCTAAAATTCTTGAAAAACGCTTGAGAATGAAGAAGGTTGAATGATTTTTAAGCTAGCAAACTTTGCAGCCGGGTATCTCAAAAACTAGTAAAGCTAGCAGAAAGCTGTCAACAACAAAATTGCTTAGCATAAAACTTAGTACATTTTTGTAGTTTACAACTTTTTGATAGCTACCGTAGTTTTGGAGTTATGTGTCTTTAAAGTTAAGCGAATCAACGACTACGCAGCGCGGCGCCCCTCCCCTTGTCGGCCGCTAAGAGACGCAGAGAAACGAGATCGCTCTAGCTTTTCTGCGTCTCCACAGGCAGCATCAAGGCGGATGTTTCACAAAAATTTGAAAATTTGAGTTCAGCACATTTTCAGCTTCAAAATGAGACAAAATTCTTGAAAAATTCGTGAGAATGAAGAAGTTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATTCTTGCATGCCTCACAATACGGTACACGTCCTCCATTTTGCTGCTGAGTTGTGGTGG</canonical>
            <polymorphic>CGGGCACCAAGACTTTCCGGCGGCCAGGACGAACGCGCCGCTGAATTTGTTGAATTTGAATCTGGAAAATGAAATGGATTTGGCACATTTTGAGCTTTAAAATGAGCTAAAATTCTTGAAAAACGCTTGAGAATGAAGAAGGTTGAATGATTTTTAAGCTAGCAAACTTTGCAGCCGGGTATCTCAAAAACTAGTAAAGCTAGCAGAAAGCTGTCAACAACAAAATTGCTTAGCATAAAACTTAGTACATTTTTGTAGTTTACAACTTTTTGATAGCTACCGTAGTTTTGGAGTTATGTGTCTTTAAAGTTAAGCGAATCAACGACTACGCAGCGCGGCGCCCCTCCCCTTGTCGGCCGCTAAGAGACGCAGAGAAACGAGATCGCTCTAGCTTTTCTGCGTCTCCACAGGCAGCATCAAGGCGGATGTTTCACAAAAATTTGAAAATTTGAGTTCAGCACATTTTCAGCTTCAAAATGAGACAAAATTCTTGAAAAATKCGTGAGAATGAAGAAGTTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATTCTTGCATGCCTCACAATACGGTACACGTCCTCCATTTTGCTGCTGAGTTGTGGTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>327 230 147 127 58 43 40 11 9 8</canonical_bands>
                <polymorphic_bands>327 230 147 138 58 43 40 9 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>404 375 95 62 53 11</canonical_bands>
                <polymorphic_bands>415 375 95 62 53</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>215 214 147 113 104 58 43 40 15 15 11 9 8 8</canonical_bands>
                <polymorphic_bands>215 214 147 115 113 58 43 40 15 15 9 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGTTCAGCACATTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>AATCAGATTCGGTAAGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>495</pcr_amplicon_size>
		<canonical_amplicon>TGAGTTCAGCACATTTTCAGCTTCAAAATGAGACAAAATTCTTGAAAAATTCGTGAGAATGAAGAAGTTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATT</canonical_amplicon>
		<polymorphic_amplicon>TGAGTTCAGCACATTTTCAGCTTCAAAATGAGACAAAATTCTTGAAAAATKCGTGAGAATGAAGAAGTTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33854</snp_id>
        <super_contig>c008601274.Contig1</super_contig>
        <contig_pos>34586</contig_pos>
        <strand></strand>
        <context>ccaattgcta[A/T]attgctcagc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTA</left_flank>
        <right_flank>ATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTCTTGAAAAACGCTTGAGAATGAAGAAGGTTGAATGATTTTTAAGCTAGCAAACTTTGCAGCCGGGTATCTCAAAAACTAGTAAAGCTAGCAGAAAGCTGTCAACAACAAAATTGCTTAGCATAAAACTTAGTACATTTTTGTAGTTTACAACTTTTTGATAGCTACCGTAGTTTTGGAGTTATGTGTCTTTAAAGTTAAGCGAATCAACGACTACGCAGCGCGGCGCCCCTCCCCTTGTCGGCCGCTAAGAGACGCAGAGAAACGAGATCGCTCTAGCTTTTCTGCGTCTCCACAGGCAGCATCAAGGCGGATGTTTCACAAAAATTTGAAAATTTGAGTTCAGCACATTTTCAGCTTCAAAATGAGACAAAATTCTTGAAAAATTCGTGAGAATGAAGAAGTTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATTCTTGCATGCCTCACAATACGGTACACGTCCTCCATTTTGCTGCTGAGTTGTGGTGGTTGTTGTGGTCAAATGTCCGGCTTGCGGAGCATCCCCATTAGTCGTCGTGCGCTCGAAACTAGTCTTCGTGTAGGAGGAGCCTGAATTTTGGCGCGAAATTTGAAATTT</canonical>
            <polymorphic>AAATTCTTGAAAAACGCTTGAGAATGAAGAAGGTTGAATGATTTTTAAGCTAGCAAACTTTGCAGCCGGGTATCTCAAAAACTAGTAAAGCTAGCAGAAAGCTGTCAACAACAAAATTGCTTAGCATAAAACTTAGTACATTTTTGTAGTTTACAACTTTTTGATAGCTACCGTAGTTTTGGAGTTATGTGTCTTTAAAGTTAAGCGAATCAACGACTACGCAGCGCGGCGCCCCTCCCCTTGTCGGCCGCTAAGAGACGCAGAGAAACGAGATCGCTCTAGCTTTTCTGCGTCTCCACAGGCAGCATCAAGGCGGATGTTTCACAAAAATTTGAAAATTTGAGTTCAGCACATTTTCAGCTTCAAAATGAGACAAAATTCTTGAAAAATTCGTGAGAATGAAGAAGTTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAWATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATTCTTGCATGCCTCACAATACGGTACACGTCCTCCATTTTGCTGCTGAGTTGTGGTGGTTGTTGTGGTCAAATGTCCGGCTTGCGGAGCATCCCCATTAGTCGTCGTGCGCTCGAAACTAGTCTTCGTGTAGGAGGAGCCTGAATTTTGGCGCGAAATTTGAAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>231 215 214 113 104 40 15 15 13 11 8 8 7 5 1</canonical_bands>
                <polymorphic_bands>231 215 214 113 104 40 23 15 13 11 8 7 5 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAATCGAGTATTTGCTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AATCAGATTCGGTAAGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>428</pcr_amplicon_size>
		<canonical_amplicon>TTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATT</canonical_amplicon>
		<polymorphic_amplicon>TTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAWATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33855</snp_id>
        <super_contig>c008601274.Contig1</super_contig>
        <contig_pos>34632</contig_pos>
        <strand></strand>
        <context>ttacactttt[T/A]cgatagctac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTT</left_flank>
        <right_flank>CGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCTAGCAAACTTTGCAGCCGGGTATCTCAAAAACTAGTAAAGCTAGCAGAAAGCTGTCAACAACAAAATTGCTTAGCATAAAACTTAGTACATTTTTGTAGTTTACAACTTTTTGATAGCTACCGTAGTTTTGGAGTTATGTGTCTTTAAAGTTAAGCGAATCAACGACTACGCAGCGCGGCGCCCCTCCCCTTGTCGGCCGCTAAGAGACGCAGAGAAACGAGATCGCTCTAGCTTTTCTGCGTCTCCACAGGCAGCATCAAGGCGGATGTTTCACAAAAATTTGAAAATTTGAGTTCAGCACATTTTCAGCTTCAAAATGAGACAAAATTCTTGAAAAATTCGTGAGAATGAAGAAGTTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATTCTTGCATGCCTCACAATACGGTACACGTCCTCCATTTTGCTGCTGAGTTGTGGTGGTTGTTGTGGTCAAATGTCCGGCTTGCGGAGCATCCCCATTAGTCGTCGTGCGCTCGAAACTAGTCTTCGTGTAGGAGGAGCCTGAATTTTGGCGCGAAATTTGAAATTTTTCTCCTAGTTTGAAAGAGCGCTCCATTAAACAAATTTATTCAAAA</canonical>
            <polymorphic>AAGCTAGCAAACTTTGCAGCCGGGTATCTCAAAAACTAGTAAAGCTAGCAGAAAGCTGTCAACAACAAAATTGCTTAGCATAAAACTTAGTACATTTTTGTAGTTTACAACTTTTTGATAGCTACCGTAGTTTTGGAGTTATGTGTCTTTAAAGTTAAGCGAATCAACGACTACGCAGCGCGGCGCCCCTCCCCTTGTCGGCCGCTAAGAGACGCAGAGAAACGAGATCGCTCTAGCTTTTCTGCGTCTCCACAGGCAGCATCAAGGCGGATGTTTCACAAAAATTTGAAAATTTGAGTTCAGCACATTTTCAGCTTCAAAATGAGACAAAATTCTTGAAAAATTCGTGAGAATGAAGAAGTTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTWCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATTCTTGCATGCCTCACAATACGGTACACGTCCTCCATTTTGCTGCTGAGTTGTGGTGGTTGTTGTGGTCAAATGTCCGGCTTGCGGAGCATCCCCATTAGTCGTCGTGCGCTCGAAACTAGTCTTCGTGTAGGAGGAGCCTGAATTTTGGCGCGAAATTTGAAATTTTTCTCCTAGTTTGAAAGAGCGCTCCATTAAACAAATTTATTCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>367 150 134 109 100 75 65</canonical_bands>
                <polymorphic_bands>367 199 150 109 100 75</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAATCGAGTATTTGCTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AATCAGATTCGGTAAGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>428</pcr_amplicon_size>
		<canonical_amplicon>TTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATT</canonical_amplicon>
		<polymorphic_amplicon>TTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTWCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33856</snp_id>
        <super_contig>c008601274.Contig1</super_contig>
        <contig_pos>34660</contig_pos>
        <strand></strand>
        <context>tatgagatat[A/G]agcctttaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATAT</left_flank>
        <right_flank>AGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAAACTAGTAAAGCTAGCAGAAAGCTGTCAACAACAAAATTGCTTAGCATAAAACTTAGTACATTTTTGTAGTTTACAACTTTTTGATAGCTACCGTAGTTTTGGAGTTATGTGTCTTTAAAGTTAAGCGAATCAACGACTACGCAGCGCGGCGCCCCTCCCCTTGTCGGCCGCTAAGAGACGCAGAGAAACGAGATCGCTCTAGCTTTTCTGCGTCTCCACAGGCAGCATCAAGGCGGATGTTTCACAAAAATTTGAAAATTTGAGTTCAGCACATTTTCAGCTTCAAAATGAGACAAAATTCTTGAAAAATTCGTGAGAATGAAGAAGTTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATTCTTGCATGCCTCACAATACGGTACACGTCCTCCATTTTGCTGCTGAGTTGTGGTGGTTGTTGTGGTCAAATGTCCGGCTTGCGGAGCATCCCCATTAGTCGTCGTGCGCTCGAAACTAGTCTTCGTGTAGGAGGAGCCTGAATTTTGGCGCGAAATTTGAAATTTTTCTCCTAGTTTGAAAGAGCGCTCCATTAAACAAATTTATTCAAAAAACACATTAGAAAATCCTAAATTATCAA</canonical>
            <polymorphic>TCAAAAACTAGTAAAGCTAGCAGAAAGCTGTCAACAACAAAATTGCTTAGCATAAAACTTAGTACATTTTTGTAGTTTACAACTTTTTGATAGCTACCGTAGTTTTGGAGTTATGTGTCTTTAAAGTTAAGCGAATCAACGACTACGCAGCGCGGCGCCCCTCCCCTTGTCGGCCGCTAAGAGACGCAGAGAAACGAGATCGCTCTAGCTTTTCTGCGTCTCCACAGGCAGCATCAAGGCGGATGTTTCACAAAAATTTGAAAATTTGAGTTCAGCACATTTTCAGCTTCAAAATGAGACAAAATTCTTGAAAAATTCGTGAGAATGAAGAAGTTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATRAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATTCTTGCATGCCTCACAATACGGTACACGTCCTCCATTTTGCTGCTGAGTTGTGGTGGTTGTTGTGGTCAAATGTCCGGCTTGCGGAGCATCCCCATTAGTCGTCGTGCGCTCGAAACTAGTCTTCGTGTAGGAGGAGCCTGAATTTTGGCGCGAAATTTGAAATTTTTCTCCTAGTTTGAAAGAGCGCTCCATTAAACAAATTTATTCAAAAAACACATTAGAAAATCCTAAATTATCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAATCGAGTATTTGCTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AATCAGATTCGGTAAGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>428</pcr_amplicon_size>
		<canonical_amplicon>TTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATT</canonical_amplicon>
		<polymorphic_amplicon>TTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATRAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33857</snp_id>
        <super_contig>c008601274.Contig1</super_contig>
        <contig_pos>34693</contig_pos>
        <strand></strand>
        <context>cgactcttcc[C/T]tcgtcgacga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCC</left_flank>
        <right_flank>TCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAACAAAATTGCTTAGCATAAAACTTAGTACATTTTTGTAGTTTACAACTTTTTGATAGCTACCGTAGTTTTGGAGTTATGTGTCTTTAAAGTTAAGCGAATCAACGACTACGCAGCGCGGCGCCCCTCCCCTTGTCGGCCGCTAAGAGACGCAGAGAAACGAGATCGCTCTAGCTTTTCTGCGTCTCCACAGGCAGCATCAAGGCGGATGTTTCACAAAAATTTGAAAATTTGAGTTCAGCACATTTTCAGCTTCAAAATGAGACAAAATTCTTGAAAAATTCGTGAGAATGAAGAAGTTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATTCTTGCATGCCTCACAATACGGTACACGTCCTCCATTTTGCTGCTGAGTTGTGGTGGTTGTTGTGGTCAAATGTCCGGCTTGCGGAGCATCCCCATTAGTCGTCGTGCGCTCGAAACTAGTCTTCGTGTAGGAGGAGCCTGAATTTTGGCGCGAAATTTGAAATTTTTCTCCTAGTTTGAAAGAGCGCTCCATTAAACAAATTTATTCAAAAAACACATTAGAAAATCCTAAATTATCAAATTTCTTCTCTTTTTTTTGCTCTCCATTCGTTG</canonical>
            <polymorphic>ACAACAAAATTGCTTAGCATAAAACTTAGTACATTTTTGTAGTTTACAACTTTTTGATAGCTACCGTAGTTTTGGAGTTATGTGTCTTTAAAGTTAAGCGAATCAACGACTACGCAGCGCGGCGCCCCTCCCCTTGTCGGCCGCTAAGAGACGCAGAGAAACGAGATCGCTCTAGCTTTTCTGCGTCTCCACAGGCAGCATCAAGGCGGATGTTTCACAAAAATTTGAAAATTTGAGTTCAGCACATTTTCAGCTTCAAAATGAGACAAAATTCTTGAAAAATTCGTGAGAATGAAGAAGTTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCYTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATTCTTGCATGCCTCACAATACGGTACACGTCCTCCATTTTGCTGCTGAGTTGTGGTGGTTGTTGTGGTCAAATGTCCGGCTTGCGGAGCATCCCCATTAGTCGTCGTGCGCTCGAAACTAGTCTTCGTGTAGGAGGAGCCTGAATTTTGGCGCGAAATTTGAAATTTTTCTCCTAGTTTGAAAGAGCGCTCCATTAAACAAATTTATTCAAAAAACACATTAGAAAATCCTAAATTATCAAATTTCTTCTCTTTTTTTTGCTCTCCATTCGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAATCGAGTATTTGCTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AATCAGATTCGGTAAGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>428</pcr_amplicon_size>
		<canonical_amplicon>TTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATT</canonical_amplicon>
		<polymorphic_amplicon>TTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCYTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33858</snp_id>
        <super_contig>c008601274.Contig1</super_contig>
        <contig_pos>34740</contig_pos>
        <strand></strand>
        <context>tatcttctct[G/A]cgtctccctt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCT</left_flank>
        <right_flank>CGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTTTTTGATAGCTACCGTAGTTTTGGAGTTATGTGTCTTTAAAGTTAAGCGAATCAACGACTACGCAGCGCGGCGCCCCTCCCCTTGTCGGCCGCTAAGAGACGCAGAGAAACGAGATCGCTCTAGCTTTTCTGCGTCTCCACAGGCAGCATCAAGGCGGATGTTTCACAAAAATTTGAAAATTTGAGTTCAGCACATTTTCAGCTTCAAAATGAGACAAAATTCTTGAAAAATTCGTGAGAATGAAGAAGTTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATTCTTGCATGCCTCACAATACGGTACACGTCCTCCATTTTGCTGCTGAGTTGTGGTGGTTGTTGTGGTCAAATGTCCGGCTTGCGGAGCATCCCCATTAGTCGTCGTGCGCTCGAAACTAGTCTTCGTGTAGGAGGAGCCTGAATTTTGGCGCGAAATTTGAAATTTTTCTCCTAGTTTGAAAGAGCGCTCCATTAAACAAATTTATTCAAAAAACACATTAGAAAATCCTAAATTATCAAATTTCTTCTCTTTTTTTTGCTCTCCATTCGTTGTCCCCTATCGCCATTGGACTAAAAAATTCAAATTGTTTAATGGAGCG</canonical>
            <polymorphic>AACTTTTTGATAGCTACCGTAGTTTTGGAGTTATGTGTCTTTAAAGTTAAGCGAATCAACGACTACGCAGCGCGGCGCCCCTCCCCTTGTCGGCCGCTAAGAGACGCAGAGAAACGAGATCGCTCTAGCTTTTCTGCGTCTCCACAGGCAGCATCAAGGCGGATGTTTCACAAAAATTTGAAAATTTGAGTTCAGCACATTTTCAGCTTCAAAATGAGACAAAATTCTTGAAAAATTCGTGAGAATGAAGAAGTTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTRCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATTCTTGCATGCCTCACAATACGGTACACGTCCTCCATTTTGCTGCTGAGTTGTGGTGGTTGTTGTGGTCAAATGTCCGGCTTGCGGAGCATCCCCATTAGTCGTCGTGCGCTCGAAACTAGTCTTCGTGTAGGAGGAGCCTGAATTTTGGCGCGAAATTTGAAATTTTTCTCCTAGTTTGAAAGAGCGCTCCATTAAACAAATTTATTCAAAAAACACATTAGAAAATCCTAAATTATCAAATTTCTTCTCTTTTTTTTGCTCTCCATTCGTTGTCCCCTATCGCCATTGGACTAAAAAATTCAAATTGTTTAATGGAGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAATCGAGTATTTGCTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AATCAGATTCGGTAAGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>428</pcr_amplicon_size>
		<canonical_amplicon>TTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATT</canonical_amplicon>
		<polymorphic_amplicon>TTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTRCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33859</snp_id>
        <super_contig>c008601274.Contig1</super_contig>
        <contig_pos>34764</contig_pos>
        <strand></strand>
        <context>caaaacttta[G/A]aggygcatat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTA</left_flank>
        <right_flank>AGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGAGTTATGTGTCTTTAAAGTTAAGCGAATCAACGACTACGCAGCGCGGCGCCCCTCCCCTTGTCGGCCGCTAAGAGACGCAGAGAAACGAGATCGCTCTAGCTTTTCTGCGTCTCCACAGGCAGCATCAAGGCGGATGTTTCACAAAAATTTGAAAATTTGAGTTCAGCACATTTTCAGCTTCAAAATGAGACAAAATTCTTGAAAAATTCGTGAGAATGAAGAAGTTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATTCTTGCATGCCTCACAATACGGTACACGTCCTCCATTTTGCTGCTGAGTTGTGGTGGTTGTTGTGGTCAAATGTCCGGCTTGCGGAGCATCCCCATTAGTCGTCGTGCGCTCGAAACTAGTCTTCGTGTAGGAGGAGCCTGAATTTTGGCGCGAAATTTGAAATTTTTCTCCTAGTTTGAAAGAGCGCTCCATTAAACAAATTTATTCAAAAAACACATTAGAAAATCCTAAATTATCAAATTTCTTCTCTTTTTTTTGCTCTCCATTCGTTGTCCCCTATCGCCATTGGACTAAAAAATTCAAATTGTTTAATGGAGCGCACATGCTAGGCTAATAAACTAGA</canonical>
            <polymorphic>TTGGAGTTATGTGTCTTTAAAGTTAAGCGAATCAACGACTACGCAGCGCGGCGCCCCTCCCCTTGTCGGCCGCTAAGAGACGCAGAGAAACGAGATCGCTCTAGCTTTTCTGCGTCTCCACAGGCAGCATCAAGGCGGATGTTTCACAAAAATTTGAAAATTTGAGTTCAGCACATTTTCAGCTTCAAAATGAGACAAAATTCTTGAAAAATTCGTGAGAATGAAGAAGTTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTARAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATTCTTGCATGCCTCACAATACGGTACACGTCCTCCATTTTGCTGCTGAGTTGTGGTGGTTGTTGTGGTCAAATGTCCGGCTTGCGGAGCATCCCCATTAGTCGTCGTGCGCTCGAAACTAGTCTTCGTGTAGGAGGAGCCTGAATTTTGGCGCGAAATTTGAAATTTTTCTCCTAGTTTGAAAGAGCGCTCCATTAAACAAATTTATTCAAAAAACACATTAGAAAATCCTAAATTATCAAATTTCTTCTCTTTTTTTTGCTCTCCATTCGTTGTCCCCTATCGCCATTGGACTAAAAAATTCAAATTGTTTAATGGAGCGCACATGCTAGGCTAATAAACTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAATCGAGTATTTGCTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AATCAGATTCGGTAAGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>428</pcr_amplicon_size>
		<canonical_amplicon>TTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATT</canonical_amplicon>
		<polymorphic_amplicon>TTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTARAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33860</snp_id>
        <super_contig>c008601274.Contig1</super_contig>
        <contig_pos>34768</contig_pos>
        <strand></strand>
        <context>actttaragg[C/T]gcatatctca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGG</left_flank>
        <right_flank>GCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTATGTGTCTTTAAAGTTAAGCGAATCAACGACTACGCAGCGCGGCGCCCCTCCCCTTGTCGGCCGCTAAGAGACGCAGAGAAACGAGATCGCTCTAGCTTTTCTGCGTCTCCACAGGCAGCATCAAGGCGGATGTTTCACAAAAATTTGAAAATTTGAGTTCAGCACATTTTCAGCTTCAAAATGAGACAAAATTCTTGAAAAATTCGTGAGAATGAAGAAGTTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATTCTTGCATGCCTCACAATACGGTACACGTCCTCCATTTTGCTGCTGAGTTGTGGTGGTTGTTGTGGTCAAATGTCCGGCTTGCGGAGCATCCCCATTAGTCGTCGTGCGCTCGAAACTAGTCTTCGTGTAGGAGGAGCCTGAATTTTGGCGCGAAATTTGAAATTTTTCTCCTAGTTTGAAAGAGCGCTCCATTAAACAAATTTATTCAAAAAACACATTAGAAAATCCTAAATTATCAAATTTCTTCTCTTTTTTTTGCTCTCCATTCGTTGTCCCCTATCGCCATTGGACTAAAAAATTCAAATTGTTTAATGGAGCGCACATGCTAGGCTAATAAACTAGATTAG</canonical>
            <polymorphic>AGTTATGTGTCTTTAAAGTTAAGCGAATCAACGACTACGCAGCGCGGCGCCCCTCCCCTTGTCGGCCGCTAAGAGACGCAGAGAAACGAGATCGCTCTAGCTTTTCTGCGTCTCCACAGGCAGCATCAAGGCGGATGTTTCACAAAAATTTGAAAATTTGAGTTCAGCACATTTTCAGCTTCAAAATGAGACAAAATTCTTGAAAAATTCGTGAGAATGAAGAAGTTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGYGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATTCTTGCATGCCTCACAATACGGTACACGTCCTCCATTTTGCTGCTGAGTTGTGGTGGTTGTTGTGGTCAAATGTCCGGCTTGCGGAGCATCCCCATTAGTCGTCGTGCGCTCGAAACTAGTCTTCGTGTAGGAGGAGCCTGAATTTTGGCGCGAAATTTGAAATTTTTCTCCTAGTTTGAAAGAGCGCTCCATTAAACAAATTTATTCAAAAAACACATTAGAAAATCCTAAATTATCAAATTTCTTCTCTTTTTTTTGCTCTCCATTCGTTGTCCCCTATCGCCATTGGACTAAAAAATTCAAATTGTTTAATGGAGCGCACATGCTAGGCTAATAAACTAGATTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>260 222 187 133 44 42 41 36 28 5 2</canonical_bands>
                <polymorphic_bands>301 222 187 133 44 42 36 28 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAATCGAGTATTTGCTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AATCAGATTCGGTAAGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>428</pcr_amplicon_size>
		<canonical_amplicon>TTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATT</canonical_amplicon>
		<polymorphic_amplicon>TTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGYGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33861</snp_id>
        <super_contig>c008601274.Contig1</super_contig>
        <contig_pos>34796</contig_pos>
        <strand></strand>
        <context>aaatagctat[C/A]aaaaagttgt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTAT</left_flank>
        <right_flank>AAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACGACTACGCAGCGCGGCGCCCCTCCCCTTGTCGGCCGCTAAGAGACGCAGAGAAACGAGATCGCTCTAGCTTTTCTGCGTCTCCACAGGCAGCATCAAGGCGGATGTTTCACAAAAATTTGAAAATTTGAGTTCAGCACATTTTCAGCTTCAAAATGAGACAAAATTCTTGAAAAATTCGTGAGAATGAAGAAGTTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATTCTTGCATGCCTCACAATACGGTACACGTCCTCCATTTTGCTGCTGAGTTGTGGTGGTTGTTGTGGTCAAATGTCCGGCTTGCGGAGCATCCCCATTAGTCGTCGTGCGCTCGAAACTAGTCTTCGTGTAGGAGGAGCCTGAATTTTGGCGCGAAATTTGAAATTTTTCTCCTAGTTTGAAAGAGCGCTCCATTAAACAAATTTATTCAAAAAACACATTAGAAAATCCTAAATTATCAAATTTCTTCTCTTTTTTTTGCTCTCCATTCGTTGTCCCCTATCGCCATTGGACTAAAAAATTCAAATTGTTTAATGGAGCGCACATGCTAGGCTAATAAACTAGATTAGTAAAAATCACTTACACAAACTCAATATA</canonical>
            <polymorphic>CAACGACTACGCAGCGCGGCGCCCCTCCCCTTGTCGGCCGCTAAGAGACGCAGAGAAACGAGATCGCTCTAGCTTTTCTGCGTCTCCACAGGCAGCATCAAGGCGGATGTTTCACAAAAATTTGAAAATTTGAGTTCAGCACATTTTCAGCTTCAAAATGAGACAAAATTCTTGAAAAATTCGTGAGAATGAAGAAGTTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATMAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATTCTTGCATGCCTCACAATACGGTACACGTCCTCCATTTTGCTGCTGAGTTGTGGTGGTTGTTGTGGTCAAATGTCCGGCTTGCGGAGCATCCCCATTAGTCGTCGTGCGCTCGAAACTAGTCTTCGTGTAGGAGGAGCCTGAATTTTGGCGCGAAATTTGAAATTTTTCTCCTAGTTTGAAAGAGCGCTCCATTAAACAAATTTATTCAAAAAACACATTAGAAAATCCTAAATTATCAAATTTCTTCTCTTTTTTTTGCTCTCCATTCGTTGTCCCCTATCGCCATTGGACTAAAAAATTCAAATTGTTTAATGGAGCGCACATGCTAGGCTAATAAACTAGATTAGTAAAAATCACTTACACAAACTCAATATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAATCGAGTATTTGCTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AATCAGATTCGGTAAGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>428</pcr_amplicon_size>
		<canonical_amplicon>TTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATT</canonical_amplicon>
		<polymorphic_amplicon>TTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATMAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33862</snp_id>
        <super_contig>c008601274.Contig1</super_contig>
        <contig_pos>34840</contig_pos>
        <strand></strand>
        <context>aaatttcaca[T/C]attttcycag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACA</left_flank>
        <right_flank>ATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGACGCAGAGAAACGAGATCGCTCTAGCTTTTCTGCGTCTCCACAGGCAGCATCAAGGCGGATGTTTCACAAAAATTTGAAAATTTGAGTTCAGCACATTTTCAGCTTCAAAATGAGACAAAATTCTTGAAAAATTCGTGAGAATGAAGAAGTTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATTCTTGCATGCCTCACAATACGGTACACGTCCTCCATTTTGCTGCTGAGTTGTGGTGGTTGTTGTGGTCAAATGTCCGGCTTGCGGAGCATCCCCATTAGTCGTCGTGCGCTCGAAACTAGTCTTCGTGTAGGAGGAGCCTGAATTTTGGCGCGAAATTTGAAATTTTTCTCCTAGTTTGAAAGAGCGCTCCATTAAACAAATTTATTCAAAAAACACATTAGAAAATCCTAAATTATCAAATTTCTTCTCTTTTTTTTGCTCTCCATTCGTTGTCCCCTATCGCCATTGGACTAAAAAATTCAAATTGTTTAATGGAGCGCACATGCTAGGCTAATAAACTAGATTAGTAAAAATCACTTACACAAACTCAATATATAATCTAAAAAATCTATCAAAAAACTGTCAACTGCGAAATTGCT</canonical>
            <polymorphic>GAGACGCAGAGAAACGAGATCGCTCTAGCTTTTCTGCGTCTCCACAGGCAGCATCAAGGCGGATGTTTCACAAAAATTTGAAAATTTGAGTTCAGCACATTTTCAGCTTCAAAATGAGACAAAATTCTTGAAAAATTCGTGAGAATGAAGAAGTTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACAYATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATTCTTGCATGCCTCACAATACGGTACACGTCCTCCATTTTGCTGCTGAGTTGTGGTGGTTGTTGTGGTCAAATGTCCGGCTTGCGGAGCATCCCCATTAGTCGTCGTGCGCTCGAAACTAGTCTTCGTGTAGGAGGAGCCTGAATTTTGGCGCGAAATTTGAAATTTTTCTCCTAGTTTGAAAGAGCGCTCCATTAAACAAATTTATTCAAAAAACACATTAGAAAATCCTAAATTATCAAATTTCTTCTCTTTTTTTTGCTCTCCATTCGTTGTCCCCTATCGCCATTGGACTAAAAAATTCAAATTGTTTAATGGAGCGCACATGCTAGGCTAATAAACTAGATTAGTAAAAATCACTTACACAAACTCAATATATAATCTAAAAAATCTATCAAAAAACTGTCAACTGCGAAATTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAATCGAGTATTTGCTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AATCAGATTCGGTAAGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>428</pcr_amplicon_size>
		<canonical_amplicon>TTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATT</canonical_amplicon>
		<polymorphic_amplicon>TTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACAYATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33863</snp_id>
        <super_contig>c008601274.Contig1</super_contig>
        <contig_pos>34847</contig_pos>
        <strand></strand>
        <context>acayattttc[T/C]cagttgacaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTC</left_flank>
        <right_flank>CAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGAAACGAGATCGCTCTAGCTTTTCTGCGTCTCCACAGGCAGCATCAAGGCGGATGTTTCACAAAAATTTGAAAATTTGAGTTCAGCACATTTTCAGCTTCAAAATGAGACAAAATTCTTGAAAAATTCGTGAGAATGAAGAAGTTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATTCTTGCATGCCTCACAATACGGTACACGTCCTCCATTTTGCTGCTGAGTTGTGGTGGTTGTTGTGGTCAAATGTCCGGCTTGCGGAGCATCCCCATTAGTCGTCGTGCGCTCGAAACTAGTCTTCGTGTAGGAGGAGCCTGAATTTTGGCGCGAAATTTGAAATTTTTCTCCTAGTTTGAAAGAGCGCTCCATTAAACAAATTTATTCAAAAAACACATTAGAAAATCCTAAATTATCAAATTTCTTCTCTTTTTTTTGCTCTCCATTCGTTGTCCCCTATCGCCATTGGACTAAAAAATTCAAATTGTTTAATGGAGCGCACATGCTAGGCTAATAAACTAGATTAGTAAAAATCACTTACACAAACTCAATATATAATCTAAAAAATCTATCAAAAAACTGTCAACTGCGAAATTGCTCAGCTTA</canonical>
            <polymorphic>AGAGAAACGAGATCGCTCTAGCTTTTCTGCGTCTCCACAGGCAGCATCAAGGCGGATGTTTCACAAAAATTTGAAAATTTGAGTTCAGCACATTTTCAGCTTCAAAATGAGACAAAATTCTTGAAAAATTCGTGAGAATGAAGAAGTTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCYCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATTCTTGCATGCCTCACAATACGGTACACGTCCTCCATTTTGCTGCTGAGTTGTGGTGGTTGTTGTGGTCAAATGTCCGGCTTGCGGAGCATCCCCATTAGTCGTCGTGCGCTCGAAACTAGTCTTCGTGTAGGAGGAGCCTGAATTTTGGCGCGAAATTTGAAATTTTTCTCCTAGTTTGAAAGAGCGCTCCATTAAACAAATTTATTCAAAAAACACATTAGAAAATCCTAAATTATCAAATTTCTTCTCTTTTTTTTGCTCTCCATTCGTTGTCCCCTATCGCCATTGGACTAAAAAATTCAAATTGTTTAATGGAGCGCACATGCTAGGCTAATAAACTAGATTAGTAAAAATCACTTACACAAACTCAATATATAATCTAAAAAATCTATCAAAAAACTGTCAACTGCGAAATTGCTCAGCTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>375 206 150 118 80 38 25 8</canonical_bands>
                <polymorphic_bands>375 206 150 143 80 38 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAATCGAGTATTTGCTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AATCAGATTCGGTAAGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>428</pcr_amplicon_size>
		<canonical_amplicon>TTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCTCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATT</canonical_amplicon>
		<polymorphic_amplicon>TTAATCGAGTATTTGCTGTTTTTTAAGCTAGCAAACTTTGGAGGCGCGTATCTCAAAAACTAAGAAAGCTACAAAAAAGGTGCCAATTGCTAAATTGCTCAGCATAAAATTTCACACATTTTTGCAGTTTACACTTTTTCGATAGCTACTGTAGTTTATGAGATATAAGCCTTTAAACTAAGAGAGCGGCGACTCTTCCCTCGTCGACGAGGAGACGCAGAGAAGCGAGAGCGCGCTATCTTCTCTGCGTCTCCCTTTGCCAAAACTTTAGAGGCGCATATCTCAAAAACTAAAATAGCTATCAAAAAGTTGTCGACTACAAAATTGCTCAGCATAAAATTTCACATATTTTCYCAGTTGACAACTTTTATCTAGCTCTTTCAGTTTTCGAGATATTTTCAAAATAAAAAACCTTACCGAATCTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33864</snp_id>
        <super_contig>c008601274.Contig1</super_contig>
        <contig_pos>36686</contig_pos>
        <strand>+</strand>
        <context>GAAAGGTGCG[C/T]TAGAGACGCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCAGGGTACTGTAGTTGTGTAGATATGCGCCTTTAAAGTGAAAGGTGCG</left_flank>
        <right_flank>TAGAGACGCGGCGACACAGGAGAGAGAGGAAGAGGCGCAGAGACGCGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGTTTGGGTTTGTTCCAGCTCACTTTGATGGCGAGCAATGCACTCGATGGCACGAACTCGATCGTCGTCTTCCATTTCTCGAAGACCTAGTTTTTAAATTTGAATGATACAATTTTGGCGCATTAAAATGAGCTCAAAATCGGGAGAATCGAGCTAGGCAACTTTAAAGGCGCATATCTCAAAAACTAGAGTAGCTACCAAAAAAGTGTCAACTATGAAAATGTTTAAATTTTAATTTTACATACTTTTGCATTTAACAAATTTTGACTAGTTACCGTAGTTTTTGAGATATGCGCCTTTAAACGTTTTAGGCTCTGACTACAAGAGGGTGCGCTTCTGAAAAGTTTAAAAGCCCATAAGTCAAAAACTACAGTAGCTATAAAAAAGTTGTCTACTACGAAAAAGTTGAAAATGTAATTTTACACATTTTTGCAGTAATCAATTTTCTGCAGGGTACTGTAGTTGTGTAGATATGCGCCTTTAAAGTGAAAGGTGCGCTAGAGACGCGGCGACACAGGAGAGAGAGGAAGAGGCGCAGAGACGCGAGACAATCACTTTTTCGAAAATTTTGCAAAATGCAATAGTTATACTGTAATAGTGATAAATAATAATTGCTAAAAATTCTGGAGAAAATAAGAAAAACATGAACTATAGGAGTTTTTCGAAAAATTTTAAAAAATAGTTTTTTTGGAATTTTTGGAATTTCCAAATTTTGGTTTTTTACAAATTTCAGCGAAATTTCGAATTTATATCAATCAAATTATTTGATTAATGACGCTCTTTTCACCAAAAATACAAGAGACGCAGACATCCTAGACAGTCTCTCTTCTCTGCGCCTCTTCTCAAGTCTAAAAATATAAAGGCGCATATCTCGCAAACTAAAAAAACTAGAACATTTTTGTTAACTATAAAAATATGTGAAATTTTATGCTGAGCAATTTTGCAGTTGACATCTTTTTGATAGCTATTTTAGTTTTTGAGATATGCGCCTTTAAAGC</canonical>
            <polymorphic>TGAGTTTGGGTTTGTTCCAGCTCACTTTGATGGCGAGCAATGCACTCGATGGCACGAACTCGATCGTCGTCTTCCATTTCTCGAAGACCTAGTTTTTAAATTTGAATGATACAATTTTGGCGCATTAAAATGAGCTCAAAATCGGGAGAATCGAGCTAGGCAACTTTAAAGGCGCATATCTCAAAAACTAGAGTAGCTACCAAAAAAGTGTCAACTATGAAAATGTTTAAATTTTAATTTTACATACTTTTGCATTTAACAAATTTTGACTAGTTACCGTAGTTTTTGAGATATGCGCCTTTAAACGTTTTAGGCTCTGACTACAAGAGGGTGCGCTTCTGAAAAGTTTAAAAGCCCATAAGTCAAAAACTACAGTAGCTATAAAAAAGTTGTCTACTACGAAAAAGTTGAAAATGTAATTTTACACATTTTTGCAGTAATCAATTTTCTGCAGGGTACTGTAGTTGTGTAGATATGCGCCTTTAAAGTGAAAGGTGCGYTAGAGACGCGGCGACACAGGAGAGAGAGGAAGAGGCGCAGAGACGCGAGACAATCACTTTTTCGAAAATTTTGCAAAATGCAATAGTTATACTGTAATAGTGATAAATAATAATTGCTAAAAATTCTGGAGAAAATAAGAAAAACATGAACTATAGGAGTTTTTCGAAAAATTTTAAAAAATAGTTTTTTTGGAATTTTTGGAATTTCCAAATTTTGGTTTTTTACAAATTTCAGCGAAATTTCGAATTTATATCAATCAAATTATTTGATTAATGACGCTCTTTTCACCAAAAATACAAGAGACGCAGACATCCTAGACAGTCTCTCTTCTCTGCGCCTCTTCTCAAGTCTAAAAATATAAAGGCGCATATCTCGCAAACTAAAAAAACTAGAACATTTTTGTTAACTATAAAAATATGTGAAATTTTATGCTGAGCAATTTTGCAGTTGACATCTTTTTGATAGCTATTTTAGTTTTTGAGATATGCGCCTTTAAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>300 144 123 123 122 52 38 38 30 20 10</canonical_bands>
                <polymorphic_bands>300 144 123 123 122 58 52 38 30 10</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>315 230 110 89 82 75 67 32</canonical_bands>
                <polymorphic_bands>545 110 89 82 75 67 32</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>466 368 123 39 4</canonical_bands>
                <polymorphic_bands>834 123 39 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCATTAAAATGAGCTCAAAATC</pcr_primer_p1>
		<pcr_primer_p2>TTTCGAAAAAGTGATTGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>446</pcr_amplicon_size>
		<canonical_amplicon>GCATTAAAATGAGCTCAAAATCGGGAGAATCGAGCTAGGCAACTTTAAAGGCGCATATCTCAAAAACTAGAGTAGCTACCAAAAAAGTGTCAACTATGAAAATGTTTAAATTTTAATTTTACATACTTTTGCATTTAACAAATTTTGACTAGTTACCGTAGTTTTTGAGATATGCGCCTTTAAACGTTTTAGGCTCTGACTACAAGAGGGTGCGCTTCTGAAAAGTTTAAAAGCCCATAAGTCAAAAACTACAGTAGCTATAAAAAAGTTGTCTACTACGAAAAAGTTGAAAATGTAATTTTACACATTTTTGCAGTAATCAATTTTCTGCAGGGTACTGTAGTTGTGTAGATATGCGCCTTTAAAGTGAAAGGTGCGCTAGAGACGCGGCGACACAGGAGAGAGAGGAAGAGGCGCAGAGACGCGAGACAATCACTTTTTCGAAA</canonical_amplicon>
		<polymorphic_amplicon>GCATTAAAATGAGCTCAAAATCGGGAGAATCGAGCTAGGCAACTTTAAAGGCGCATATCTCAAAAACTAGAGTAGCTACCAAAAAAGTGTCAACTATGAAAATGTTTAAATTTTAATTTTACATACTTTTGCATTTAACAAATTTTGACTAGTTACCGTAGTTTTTGAGATATGCGCCTTTAAACGTTTTAGGCTCTGACTACAAGAGGGTGCGCTTCTGAAAAGTTTAAAAGCCCATAAGTCAAAAACTACAGTAGCTATAAAAAAGTTGTCTACTACGAAAAAGTTGAAAATGTAATTTTACACATTTTTGCAGTAATCAATTTTCTGCAGGGTACTGTAGTTGTGTAGATATGCGCCTTTAAAGTGAAAGGTGCGYTAGAGACGCGGCGACACAGGAGAGAGAGGAAGAGGCGCAGAGACGCGAGACAATCACTTTTTCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33865</snp_id>
        <super_contig>c008601274.Contig1</super_contig>
        <contig_pos>36706</contig_pos>
        <strand>+</strand>
        <context>GGCGACACAG[G/T]RGAGAGAGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAGATATGCGCCTTTAAAGTGAAAGGTGCGCTAGAGACGCGGCGACACAG</left_flank>
        <right_flank>AGAGAGAGGAAGAGGCGCAGAGACGCGAGACAATCACTTTTTCGAAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCACTTTGATGGCGAGCAATGCACTCGATGGCACGAACTCGATCGTCGTCTTCCATTTCTCGAAGACCTAGTTTTTAAATTTGAATGATACAATTTTGGCGCATTAAAATGAGCTCAAAATCGGGAGAATCGAGCTAGGCAACTTTAAAGGCGCATATCTCAAAAACTAGAGTAGCTACCAAAAAAGTGTCAACTATGAAAATGTTTAAATTTTAATTTTACATACTTTTGCATTTAACAAATTTTGACTAGTTACCGTAGTTTTTGAGATATGCGCCTTTAAACGTTTTAGGCTCTGACTACAAGAGGGTGCGCTTCTGAAAAGTTTAAAAGCCCATAAGTCAAAAACTACAGTAGCTATAAAAAAGTTGTCTACTACGAAAAAGTTGAAAATGTAATTTTACACATTTTTGCAGTAATCAATTTTCTGCAGGGTACTGTAGTTGTGTAGATATGCGCCTTTAAAGTGAAAGGTGCGCTAGAGACGCGGCGACACAGGAGAGAGAGGAAGAGGCGCAGAGACGCGAGACAATCACTTTTTCGAAAATTTTGCAAAATGCAATAGTTATACTGTAATAGTGATAAATAATAATTGCTAAAAATTCTGGAGAAAATAAGAAAAACATGAACTATAGGAGTTTTTCGAAAAATTTTAAAAAATAGTTTTTTTGGAATTTTTGGAATTTCCAAATTTTGGTTTTTTACAAATTTCAGCGAAATTTCGAATTTATATCAATCAAATTATTTGATTAATGACGCTCTTTTCACCAAAAATACAAGAGACGCAGACATCCTAGACAGTCTCTCTTCTCTGCGCCTCTTCTCAAGTCTAAAAATATAAAGGCGCATATCTCGCAAACTAAAAAAACTAGAACATTTTTGTTAACTATAAAAATATGTGAAATTTTATGCTGAGCAATTTTGCAGTTGACATCTTTTTGATAGCTATTTTAGTTTTTGAGATATGCGCCTTTAAAGCTAAGCGGGTCGGCGCCCCTC</canonical>
            <polymorphic>CTCACTTTGATGGCGAGCAATGCACTCGATGGCACGAACTCGATCGTCGTCTTCCATTTCTCGAAGACCTAGTTTTTAAATTTGAATGATACAATTTTGGCGCATTAAAATGAGCTCAAAATCGGGAGAATCGAGCTAGGCAACTTTAAAGGCGCATATCTCAAAAACTAGAGTAGCTACCAAAAAAGTGTCAACTATGAAAATGTTTAAATTTTAATTTTACATACTTTTGCATTTAACAAATTTTGACTAGTTACCGTAGTTTTTGAGATATGCGCCTTTAAACGTTTTAGGCTCTGACTACAAGAGGGTGCGCTTCTGAAAAGTTTAAAAGCCCATAAGTCAAAAACTACAGTAGCTATAAAAAAGTTGTCTACTACGAAAAAGTTGAAAATGTAATTTTACACATTTTTGCAGTAATCAATTTTCTGCAGGGTACTGTAGTTGTGTAGATATGCGCCTTTAAAGTGAAAGGTGCGCTAGAGACGCGGCGACACAGKAGAGAGAGGAAGAGGCGCAGAGACGCGAGACAATCACTTTTTCGAAAATTTTGCAAAATGCAATAGTTATACTGTAATAGTGATAAATAATAATTGCTAAAAATTCTGGAGAAAATAAGAAAAACATGAACTATAGGAGTTTTTCGAAAAATTTTAAAAAATAGTTTTTTTGGAATTTTTGGAATTTCCAAATTTTGGTTTTTTACAAATTTCAGCGAAATTTCGAATTTATATCAATCAAATTATTTGATTAATGACGCTCTTTTCACCAAAAATACAAGAGACGCAGACATCCTAGACAGTCTCTCTTCTCTGCGCCTCTTCTCAAGTCTAAAAATATAAAGGCGCATATCTCGCAAACTAAAAAAACTAGAACATTTTTGTTAACTATAAAAATATGTGAAATTTTATGCTGAGCAATTTTGCAGTTGACATCTTTTTGATAGCTATTTTAGTTTTTGAGATATGCGCCTTTAAAGCTAAGCGGGTCGGCGCCCCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCATTAAAATGAGCTCAAAATC</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTATTTTCTCCAGAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>521</pcr_amplicon_size>
		<canonical_amplicon>GCATTAAAATGAGCTCAAAATCGGGAGAATCGAGCTAGGCAACTTTAAAGGCGCATATCTCAAAAACTAGAGTAGCTACCAAAAAAGTGTCAACTATGAAAATGTTTAAATTTTAATTTTACATACTTTTGCATTTAACAAATTTTGACTAGTTACCGTAGTTTTTGAGATATGCGCCTTTAAACGTTTTAGGCTCTGACTACAAGAGGGTGCGCTTCTGAAAAGTTTAAAAGCCCATAAGTCAAAAACTACAGTAGCTATAAAAAAGTTGTCTACTACGAAAAAGTTGAAAATGTAATTTTACACATTTTTGCAGTAATCAATTTTCTGCAGGGTACTGTAGTTGTGTAGATATGCGCCTTTAAAGTGAAAGGTGCGCTAGAGACGCGGCGACACAGGAGAGAGAGGAAGAGGCGCAGAGACGCGAGACAATCACTTTTTCGAAAATTTTGCAAAATGCAATAGTTATACTGTAATAGTGATAAATAATAATTGCTAAAAATTCTGGAGAAAATAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>GCATTAAAATGAGCTCAAAATCGGGAGAATCGAGCTAGGCAACTTTAAAGGCGCATATCTCAAAAACTAGAGTAGCTACCAAAAAAGTGTCAACTATGAAAATGTTTAAATTTTAATTTTACATACTTTTGCATTTAACAAATTTTGACTAGTTACCGTAGTTTTTGAGATATGCGCCTTTAAACGTTTTAGGCTCTGACTACAAGAGGGTGCGCTTCTGAAAAGTTTAAAAGCCCATAAGTCAAAAACTACAGTAGCTATAAAAAAGTTGTCTACTACGAAAAAGTTGAAAATGTAATTTTACACATTTTTGCAGTAATCAATTTTCTGCAGGGTACTGTAGTTGTGTAGATATGCGCCTTTAAAGTGAAAGGTGCGCTAGAGACGCGGCGACACAGKAGAGAGAGGAAGAGGCGCAGAGACGCGAGACAATCACTTTTTCGAAAATTTTGCAAAATGCAATAGTTATACTGTAATAGTGATAAATAATAATTGCTAAAAATTCTGGAGAAAATAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33866</snp_id>
        <super_contig>c008601274.Contig1</super_contig>
        <contig_pos>36707</contig_pos>
        <strand>+</strand>
        <context>GCGACACAGK[A/G]GAGAGAGGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGATATGCGCCTTTAAAGTGAAAGGTGCGCTAGAGACGCGGCGACACAGG</left_flank>
        <right_flank>GAGAGAGGAAGAGGCGCAGAGACGCGAGACAATCACTTTTTCGAAAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACTTTGATGGCGAGCAATGCACTCGATGGCACGAACTCGATCGTCGTCTTCCATTTCTCGAAGACCTAGTTTTTAAATTTGAATGATACAATTTTGGCGCATTAAAATGAGCTCAAAATCGGGAGAATCGAGCTAGGCAACTTTAAAGGCGCATATCTCAAAAACTAGAGTAGCTACCAAAAAAGTGTCAACTATGAAAATGTTTAAATTTTAATTTTACATACTTTTGCATTTAACAAATTTTGACTAGTTACCGTAGTTTTTGAGATATGCGCCTTTAAACGTTTTAGGCTCTGACTACAAGAGGGTGCGCTTCTGAAAAGTTTAAAAGCCCATAAGTCAAAAACTACAGTAGCTATAAAAAAGTTGTCTACTACGAAAAAGTTGAAAATGTAATTTTACACATTTTTGCAGTAATCAATTTTCTGCAGGGTACTGTAGTTGTGTAGATATGCGCCTTTAAAGTGAAAGGTGCGCTAGAGACGCGGCGACACAGGAGAGAGAGGAAGAGGCGCAGAGACGCGAGACAATCACTTTTTCGAAAATTTTGCAAAATGCAATAGTTATACTGTAATAGTGATAAATAATAATTGCTAAAAATTCTGGAGAAAATAAGAAAAACATGAACTATAGGAGTTTTTCGAAAAATTTTAAAAAATAGTTTTTTTGGAATTTTTGGAATTTCCAAATTTTGGTTTTTTACAAATTTCAGCGAAATTTCGAATTTATATCAATCAAATTATTTGATTAATGACGCTCTTTTCACCAAAAATACAAGAGACGCAGACATCCTAGACAGTCTCTCTTCTCTGCGCCTCTTCTCAAGTCTAAAAATATAAAGGCGCATATCTCGCAAACTAAAAAAACTAGAACATTTTTGTTAACTATAAAAATATGTGAAATTTTATGCTGAGCAATTTTGCAGTTGACATCTTTTTGATAGCTATTTTAGTTTTTGAGATATGCGCCTTTAAAGCTAAGCGGGTCGGCGCCCCTCC</canonical>
            <polymorphic>TCACTTTGATGGCGAGCAATGCACTCGATGGCACGAACTCGATCGTCGTCTTCCATTTCTCGAAGACCTAGTTTTTAAATTTGAATGATACAATTTTGGCGCATTAAAATGAGCTCAAAATCGGGAGAATCGAGCTAGGCAACTTTAAAGGCGCATATCTCAAAAACTAGAGTAGCTACCAAAAAAGTGTCAACTATGAAAATGTTTAAATTTTAATTTTACATACTTTTGCATTTAACAAATTTTGACTAGTTACCGTAGTTTTTGAGATATGCGCCTTTAAACGTTTTAGGCTCTGACTACAAGAGGGTGCGCTTCTGAAAAGTTTAAAAGCCCATAAGTCAAAAACTACAGTAGCTATAAAAAAGTTGTCTACTACGAAAAAGTTGAAAATGTAATTTTACACATTTTTGCAGTAATCAATTTTCTGCAGGGTACTGTAGTTGTGTAGATATGCGCCTTTAAAGTGAAAGGTGCGCTAGAGACGCGGCGACACAGGRGAGAGAGGAAGAGGCGCAGAGACGCGAGACAATCACTTTTTCGAAAATTTTGCAAAATGCAATAGTTATACTGTAATAGTGATAAATAATAATTGCTAAAAATTCTGGAGAAAATAAGAAAAACATGAACTATAGGAGTTTTTCGAAAAATTTTAAAAAATAGTTTTTTTGGAATTTTTGGAATTTCCAAATTTTGGTTTTTTACAAATTTCAGCGAAATTTCGAATTTATATCAATCAAATTATTTGATTAATGACGCTCTTTTCACCAAAAATACAAGAGACGCAGACATCCTAGACAGTCTCTCTTCTCTGCGCCTCTTCTCAAGTCTAAAAATATAAAGGCGCATATCTCGCAAACTAAAAAAACTAGAACATTTTTGTTAACTATAAAAATATGTGAAATTTTATGCTGAGCAATTTTGCAGTTGACATCTTTTTGATAGCTATTTTAGTTTTTGAGATATGCGCCTTTAAAGCTAAGCGGGTCGGCGCCCCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCATTAAAATGAGCTCAAAATC</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTATTTTCTCCAGAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>521</pcr_amplicon_size>
		<canonical_amplicon>GCATTAAAATGAGCTCAAAATCGGGAGAATCGAGCTAGGCAACTTTAAAGGCGCATATCTCAAAAACTAGAGTAGCTACCAAAAAAGTGTCAACTATGAAAATGTTTAAATTTTAATTTTACATACTTTTGCATTTAACAAATTTTGACTAGTTACCGTAGTTTTTGAGATATGCGCCTTTAAACGTTTTAGGCTCTGACTACAAGAGGGTGCGCTTCTGAAAAGTTTAAAAGCCCATAAGTCAAAAACTACAGTAGCTATAAAAAAGTTGTCTACTACGAAAAAGTTGAAAATGTAATTTTACACATTTTTGCAGTAATCAATTTTCTGCAGGGTACTGTAGTTGTGTAGATATGCGCCTTTAAAGTGAAAGGTGCGCTAGAGACGCGGCGACACAGGAGAGAGAGGAAGAGGCGCAGAGACGCGAGACAATCACTTTTTCGAAAATTTTGCAAAATGCAATAGTTATACTGTAATAGTGATAAATAATAATTGCTAAAAATTCTGGAGAAAATAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>GCATTAAAATGAGCTCAAAATCGGGAGAATCGAGCTAGGCAACTTTAAAGGCGCATATCTCAAAAACTAGAGTAGCTACCAAAAAAGTGTCAACTATGAAAATGTTTAAATTTTAATTTTACATACTTTTGCATTTAACAAATTTTGACTAGTTACCGTAGTTTTTGAGATATGCGCCTTTAAACGTTTTAGGCTCTGACTACAAGAGGGTGCGCTTCTGAAAAGTTTAAAAGCCCATAAGTCAAAAACTACAGTAGCTATAAAAAAGTTGTCTACTACGAAAAAGTTGAAAATGTAATTTTACACATTTTTGCAGTAATCAATTTTCTGCAGGGTACTGTAGTTGTGTAGATATGCGCCTTTAAAGTGAAAGGTGCGCTAGAGACGCGGCGACACAGGRGAGAGAGGAAGAGGCGCAGAGACGCGAGACAATCACTTTTTCGAAAATTTTGCAAAATGCAATAGTTATACTGTAATAGTGATAAATAATAATTGCTAAAAATTCTGGAGAAAATAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33867</snp_id>
        <super_contig>c008601274.Contig1</super_contig>
        <contig_pos>38802</contig_pos>
        <strand>+</strand>
        <context>GTGGAATGGG[A/C]GGAGCTTGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGTAGGATCGAACCGGGGAGAGTTCCGGGGACCTTGGAAGTGGAATGGG</left_flank>
        <right_flank>GGAGCTTGAGAAGGGGGCGGAGCTTGGAAAGGCACTGGTGTCGCGGTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGGGGCCTCATATCTTGTGGGCGAAGCCTGTTCTCTTTGCTGAACAGATCGAGGGGGCGTGGTCTCATGAGAAGTGGGCGGAGCTTCGTATGGACGATCGATTTTGAAAGTGGGCGGAGCCTGGTCGTCCGATGACCTAAAAGCGGCCGGAGCCTGATTTCTAAAAGTGGGCGGAGCCTGATTTTCCGAGAAACCAAAAGTGGGTGGAGCTTGAGTGGGAGTGGCCTCCTTCACCTTAATCGGACTTGTCGCCGCCTCCACTGATACTGTAGGTACCGTAATCTTCTCATTTTTCCTGTGCAATCGAATCGATGGAATTGGAGACGTACTCTGATCGTGTACTTGAGCAGTGGGCGGAGCCAAATTTGTGGGCGGGGCCGCCGAGAATCGGGTTACTGTAGTTTGCAGTTCCGTGGATGTGGTTATATTAGCGTCGGAGCTGCGAACAATGTAGGATCGAACCGGGGAGAGTTCCGGGGACCTTGGAAGTGGAATGGGCGGAGCTTGAGAAGGGGGCGGAGCTTGGAAAGGCACTGGTGTCGCGGTTTTGGAGATTTGAATTGGGGGCGGCGTCGCATATTTTGGAATCGGCTTAAAAATTCCATCGGAGGGCTCGGAGGTCACTTTTGCGGGGCTCGGGGAGCGTACAGGGCTGTGGATTACGGTCCAGTGAATTTGACTTTTTATTTTTGGAGGCTACGCCCCTTTAGGCTCCGCCCCTTTATCCTCCCCCTTTACATCTACTCGAAGCTCTGCCTCTTTTCTCTTCCTATGCTCCTCAAACGCCTCTTTGACTTTCTCCTTACTGATATTTGATGCCCTTCTGGCTTTTCGTTTTGACTCCGCCCCTTTTTTAGGTTCAGCGCCTTTAGGCTCCGCCCCTTTCGCCGCCTCCACTTACTTAATTAGTGCTGCTAGATCTTCTCCATAATTTAATTTCTCTTTCTCTTTCTTGAGCGCATCTGCCGGATCAATTTGCCAATATCGATTTGTGGGCGG</canonical>
            <polymorphic>GCGGGGCCTCATATCTTGTGGGCGAAGCCTGTTCTCTTTGCTGAACAGATCGAGGGGGCGTGGTCTCATGAGAAGTGGGCGGAGCTTCGTATGGACGATCGATTTTGAAAGTGGGCGGAGCCTGGTCGTCCGATGACCTAAAAGCGGCCGGAGCCTGATTTCTAAAAGTGGGCGGAGCCTGATTTTCCGAGAAACCAAAAGTGGGTGGAGCTTGAGTGGGAGTGGCCTCCTTCACCTTAATCGGACTTGTCGCCGCCTCCACTGATACTGTAGGTACCGTAATCTTCTCATTTTTCCTGTGCAATCGAATCGATGGAATTGGAGACGTACTCTGATCGTGTACTTGAGCAGTGGGCGGAGCCAAATTTGTGGGCGGGGCCGCCGAGAATCGGGTTACTGTAGTTTGCAGTTCCGTGGATGTGGTTATATTAGCGTCGGAGCTGCGAACAATGTAGGATCGAACCGGGGAGAGTTCCGGGGACCTTGGAAGTGGAATGGGMGGAGCTTGAGAAGGGGGCGGAGCTTGGAAAGGCACTGGTGTCGCGGTTTTGGAGATTTGAATTGGGGGCGGCGTCGCATATTTTGGAATCGGCTTAAAAATTCCATCGGAGGGCTCGGAGGTCACTTTTGCGGGGCTCGGGGAGCGTACAGGGCTGTGGATTACGGTCCAGTGAATTTGACTTTTTATTTTTGGAGGCTACGCCCCTTTAGGCTCCGCCCCTTTATCCTCCCCCTTTACATCTACTCGAAGCTCTGCCTCTTTTCTCTTCCTATGCTCCTCAAACGCCTCTTTGACTTTCTCCTTACTGATATTTGATGCCCTTCTGGCTTTTCGTTTTGACTCCGCCCCTTTTTTAGGTTCAGCGCCTTTAGGCTCCGCCCCTTTCGCCGCCTCCACTTACTTAATTAGTGCTGCTAGATCTTCTCCATAATTTAATTTCTCTTTCTCTTTCTTGAGCGCATCTGCCGGATCAATTTGCCAATATCGATTTGTGGGCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>148 129 119 107 101 82 78 57 51 36 33 18 18 12 7 4</canonical_bands>
                <polymorphic_bands>148 137 129 107 101 82 78 57 51 36 33 18 12 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGAGACGTACTCTGATCGT</pcr_primer_p1>
		<pcr_primer_p2>CCAATTCAAATCTCCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TGGAGACGTACTCTGATCGTGTACTTGAGCAGTGGGCGGAGCCAAATTTGTGGGCGGGGCCGCCGAGAATCGGGTTACTGTAGTTTGCAGTTCCGTGGATGTGGTTATATTAGCGTCGGAGCTGCGAACAATGTAGGATCGAACCGGGGAGAGTTCCGGGGACCTTGGAAGTGGAATGGGCGGAGCTTGAGAAGGGGGCGGAGCTTGGAAAGGCACTGGTGTCGCGGTTTTGGAGATTTGAATTGG</canonical_amplicon>
		<polymorphic_amplicon>TGGAGACGTACTCTGATCGTGTACTTGAGCAGTGGGCGGAGCCAAATTTGTGGGCGGGGCCGCCGAGAATCGGGTTACTGTAGTTTGCAGTTCCGTGGATGTGGTTATATTAGCGTCGGAGCTGCGAACAATGTAGGATCGAACCGGGGAGAGTTCCGGGGACCTTGGAAGTGGAATGGGMGGAGCTTGAGAAGGGGGCGGAGCTTGGAAAGGCACTGGTGTCGCGGTTTTGGAGATTTGAATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33868</snp_id>
        <super_contig>c008601274.Contig1</super_contig>
        <contig_pos>39101</contig_pos>
        <strand>+</strand>
        <context>TCTTTGACTT[G/T]CTCCTTACTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGCTCTGCCTCTTTTCTCTTCCTATGCTCCTCAAACGCCTCTTTGACTT</left_flank>
        <right_flank>CTCCTTACTGATATTTGATGCCCTTCTGGCTTTTCGTTTTGACTCCGCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCAATCGAATCGATGGAATTGGAGACGTACTCTGATCGTGTACTTGAGCAGTGGGCGGAGCCAAATTTGTGGGCGGGGCCGCCGAGAATCGGGTTACTGTAGTTTGCAGTTCCGTGGATGTGGTTATATTAGCGTCGGAGCTGCGAACAATGTAGGATCGAACCGGGGAGAGTTCCGGGGACCTTGGAAGTGGAATGGGCGGAGCTTGAGAAGGGGGCGGAGCTTGGAAAGGCACTGGTGTCGCGGTTTTGGAGATTTGAATTGGGGGCGGCGTCGCATATTTTGGAATCGGCTTAAAAATTCCATCGGAGGGCTCGGAGGTCACTTTTGCGGGGCTCGGGGAGCGTACAGGGCTGTGGATTACGGTCCAGTGAATTTGACTTTTTATTTTTGGAGGCTACGCCCCTTTAGGCTCCGCCCCTTTATCCTCCCCCTTTACATCTACTCGAAGCTCTGCCTCTTTTCTCTTCCTATGCTCCTCAAACGCCTCTTTGACTTTCTCCTTACTGATATTTGATGCCCTTCTGGCTTTTCGTTTTGACTCCGCCCCTTTTTTAGGTTCAGCGCCTTTAGGCTCCGCCCCTTTCGCCGCCTCCACTTACTTAATTAGTGCTGCTAGATCTTCTCCATAATTTAATTTCTCTTTCTCTTTCTTGAGCGCATCTGCCGGATCAATTTGCCAATATCGATTTGTGGGCGGAGCCTGTGGTGGAGGCCATTGACGTGGCACTTTTCCGGTGCGTCGTGGGGAGACTGCAGATCGAACAGAGTCTGGGACTCGGGAAGACGGATTTTCTGGAAATTTTAGGACAAATGGACATGGACAAGGACAAGGACAAGTTTAGGACAAAGCTTTGGGCAAGACTTGGACAAGACAAATTTTGTTTGAAATTAGACAAAAAACCGACAAAAAATCCCGAACAAAATCACCCAAAAACTTAGAGATGTCCCAAAAACAAATTCAAAAAAATTATTTTTTTTTCAAAAATTCAAAAAACC</canonical>
            <polymorphic>TGCAATCGAATCGATGGAATTGGAGACGTACTCTGATCGTGTACTTGAGCAGTGGGCGGAGCCAAATTTGTGGGCGGGGCCGCCGAGAATCGGGTTACTGTAGTTTGCAGTTCCGTGGATGTGGTTATATTAGCGTCGGAGCTGCGAACAATGTAGGATCGAACCGGGGAGAGTTCCGGGGACCTTGGAAGTGGAATGGGCGGAGCTTGAGAAGGGGGCGGAGCTTGGAAAGGCACTGGTGTCGCGGTTTTGGAGATTTGAATTGGGGGCGGCGTCGCATATTTTGGAATCGGCTTAAAAATTCCATCGGAGGGCTCGGAGGTCACTTTTGCGGGGCTCGGGGAGCGTACAGGGCTGTGGATTACGGTCCAGTGAATTTGACTTTTTATTTTTGGAGGCTACGCCCCTTTAGGCTCCGCCCCTTTATCCTCCCCCTTTACATCTACTCGAAGCTCTGCCTCTTTTCTCTTCCTATGCTCCTCAAACGCCTCTTTGACTTKCTCCTTACTGATATTTGATGCCCTTCTGGCTTTTCGTTTTGACTCCGCCCCTTTTTTAGGTTCAGCGCCTTTAGGCTCCGCCCCTTTCGCCGCCTCCACTTACTTAATTAGTGCTGCTAGATCTTCTCCATAATTTAATTTCTCTTTCTCTTTCTTGAGCGCATCTGCCGGATCAATTTGCCAATATCGATTTGTGGGCGGAGCCTGTGGTGGAGGCCATTGACGTGGCACTTTTCCGGTGCGTCGTGGGGAGACTGCAGATCGAACAGAGTCTGGGACTCGGGAAGACGGATTTTCTGGAAATTTTAGGACAAATGGACATGGACAAGGACAAGGACAAGTTTAGGACAAAGCTTTGGGCAAGACTTGGACAAGACAAATTTTGTTTGAAATTAGACAAAAAACCGACAAAAAATCCCGAACAAAATCACCCAAAAACTTAGAGATGTCCCAAAAACAAATTCAAAAAAATTATTTTTTTTTCAAAAATTCAAAAAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTTTTTATTTTTGGAGGCTAC</pcr_primer_p1>
		<pcr_primer_p2>GGAGAAGATCTAGCAGCACTAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACTTTTTATTTTTGGAGGCTACGCCCCTTTAGGCTCCGCCCCTTTATCCTCCCCCTTTACATCTACTCGAAGCTCTGCCTCTTTTCTCTTCCTATGCTCCTCAAACGCCTCTTTGACTTTCTCCTTACTGATATTTGATGCCCTTCTGGCTTTTCGTTTTGACTCCGCCCCTTTTTTAGGTTCAGCGCCTTTAGGCTCCGCCCCTTTCGCCGCCTCCACTTACTTAATTAGTGCTGCTAGATCTTCTCC</canonical_amplicon>
		<polymorphic_amplicon>GACTTTTTATTTTTGGAGGCTACGCCCCTTTAGGCTCCGCCCCTTTATCCTCCCCCTTTACATCTACTCGAAGCTCTGCCTCTTTTCTCTTCCTATGCTCCTCAAACGCCTCTTTGACTTKCTCCTTACTGATATTTGATGCCCTTCTGGCTTTTCGTTTTGACTCCGCCCCTTTTTTAGGTTCAGCGCCTTTAGGCTCCGCCCCTTTCGCCGCCTCCACTTACTTAATTAGTGCTGCTAGATCTTCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33869</snp_id>
        <super_contig>c008601274.Contig1</super_contig>
        <contig_pos>39117</contig_pos>
        <strand>+</strand>
        <context>TACTGATATT[C/T]GATGCCCTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCTTCCTATGCTCCTCAAACGCCTCTTTGACTTTCTCCTTACTGATATT</left_flank>
        <right_flank>GATGCCCTTCTGGCTTTTCGTTTTGACTCCGCCCCTTTTTTAGGTTCAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTGGAGACGTACTCTGATCGTGTACTTGAGCAGTGGGCGGAGCCAAATTTGTGGGCGGGGCCGCCGAGAATCGGGTTACTGTAGTTTGCAGTTCCGTGGATGTGGTTATATTAGCGTCGGAGCTGCGAACAATGTAGGATCGAACCGGGGAGAGTTCCGGGGACCTTGGAAGTGGAATGGGCGGAGCTTGAGAAGGGGGCGGAGCTTGGAAAGGCACTGGTGTCGCGGTTTTGGAGATTTGAATTGGGGGCGGCGTCGCATATTTTGGAATCGGCTTAAAAATTCCATCGGAGGGCTCGGAGGTCACTTTTGCGGGGCTCGGGGAGCGTACAGGGCTGTGGATTACGGTCCAGTGAATTTGACTTTTTATTTTTGGAGGCTACGCCCCTTTAGGCTCCGCCCCTTTATCCTCCCCCTTTACATCTACTCGAAGCTCTGCCTCTTTTCTCTTCCTATGCTCCTCAAACGCCTCTTTGACTTTCTCCTTACTGATATTTGATGCCCTTCTGGCTTTTCGTTTTGACTCCGCCCCTTTTTTAGGTTCAGCGCCTTTAGGCTCCGCCCCTTTCGCCGCCTCCACTTACTTAATTAGTGCTGCTAGATCTTCTCCATAATTTAATTTCTCTTTCTCTTTCTTGAGCGCATCTGCCGGATCAATTTGCCAATATCGATTTGTGGGCGGAGCCTGTGGTGGAGGCCATTGACGTGGCACTTTTCCGGTGCGTCGTGGGGAGACTGCAGATCGAACAGAGTCTGGGACTCGGGAAGACGGATTTTCTGGAAATTTTAGGACAAATGGACATGGACAAGGACAAGGACAAGTTTAGGACAAAGCTTTGGGCAAGACTTGGACAAGACAAATTTTGTTTGAAATTAGACAAAAAACCGACAAAAAATCCCGAACAAAATCACCCAAAAACTTAGAGATGTCCCAAAAACAAATTCAAAAAAATTATTTTTTTTTCAAAAATTCAAAAAACCCCAAAAAGTAGACTAA</canonical>
            <polymorphic>GAATTGGAGACGTACTCTGATCGTGTACTTGAGCAGTGGGCGGAGCCAAATTTGTGGGCGGGGCCGCCGAGAATCGGGTTACTGTAGTTTGCAGTTCCGTGGATGTGGTTATATTAGCGTCGGAGCTGCGAACAATGTAGGATCGAACCGGGGAGAGTTCCGGGGACCTTGGAAGTGGAATGGGCGGAGCTTGAGAAGGGGGCGGAGCTTGGAAAGGCACTGGTGTCGCGGTTTTGGAGATTTGAATTGGGGGCGGCGTCGCATATTTTGGAATCGGCTTAAAAATTCCATCGGAGGGCTCGGAGGTCACTTTTGCGGGGCTCGGGGAGCGTACAGGGCTGTGGATTACGGTCCAGTGAATTTGACTTTTTATTTTTGGAGGCTACGCCCCTTTAGGCTCCGCCCCTTTATCCTCCCCCTTTACATCTACTCGAAGCTCTGCCTCTTTTCTCTTCCTATGCTCCTCAAACGCCTCTTTGACTTTCTCCTTACTGATATTYGATGCCCTTCTGGCTTTTCGTTTTGACTCCGCCCCTTTTTTAGGTTCAGCGCCTTTAGGCTCCGCCCCTTTCGCCGCCTCCACTTACTTAATTAGTGCTGCTAGATCTTCTCCATAATTTAATTTCTCTTTCTCTTTCTTGAGCGCATCTGCCGGATCAATTTGCCAATATCGATTTGTGGGCGGAGCCTGTGGTGGAGGCCATTGACGTGGCACTTTTCCGGTGCGTCGTGGGGAGACTGCAGATCGAACAGAGTCTGGGACTCGGGAAGACGGATTTTCTGGAAATTTTAGGACAAATGGACATGGACAAGGACAAGGACAAGTTTAGGACAAAGCTTTGGGCAAGACTTGGACAAGACAAATTTTGTTTGAAATTAGACAAAAAACCGACAAAAAATCCCGAACAAAATCACCCAAAAACTTAGAGATGTCCCAAAAACAAATTCAAAAAAATTATTTTTTTTTCAAAAATTCAAAAAACCCCAAAAAGTAGACTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTTTTTATTTTTGGAGGCTAC</pcr_primer_p1>
		<pcr_primer_p2>GGAGAAGATCTAGCAGCACTAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACTTTTTATTTTTGGAGGCTACGCCCCTTTAGGCTCCGCCCCTTTATCCTCCCCCTTTACATCTACTCGAAGCTCTGCCTCTTTTCTCTTCCTATGCTCCTCAAACGCCTCTTTGACTTTCTCCTTACTGATATTTGATGCCCTTCTGGCTTTTCGTTTTGACTCCGCCCCTTTTTTAGGTTCAGCGCCTTTAGGCTCCGCCCCTTTCGCCGCCTCCACTTACTTAATTAGTGCTGCTAGATCTTCTCC</canonical_amplicon>
		<polymorphic_amplicon>GACTTTTTATTTTTGGAGGCTACGCCCCTTTAGGCTCCGCCCCTTTATCCTCCCCCTTTACATCTACTCGAAGCTCTGCCTCTTTTCTCTTCCTATGCTCCTCAAACGCCTCTTTGACTTTCTCCTTACTGATATTYGATGCCCTTCTGGCTTTTCGTTTTGACTCCGCCCCTTTTTTAGGTTCAGCGCCTTTAGGCTCCGCCCCTTTCGCCGCCTCCACTTACTTAATTAGTGCTGCTAGATCTTCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33870</snp_id>
        <super_contig>c008601274.Contig1</super_contig>
        <contig_pos>39315</contig_pos>
        <strand>+</strand>
        <context>CCTGTGGTGG[A/G]GGCCATTGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGCCGGATCAATTTGCCAATATCGATTTGTGGGCGGAGCCTGTGGTGG</left_flank>
        <right_flank>GGCCATTGACGTGGCACTTTTCCGGTGCGTCGTGGGGAGACTGCAGATCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGGCGGAGCTTGGAAAGGCACTGGTGTCGCGGTTTTGGAGATTTGAATTGGGGGCGGCGTCGCATATTTTGGAATCGGCTTAAAAATTCCATCGGAGGGCTCGGAGGTCACTTTTGCGGGGCTCGGGGAGCGTACAGGGCTGTGGATTACGGTCCAGTGAATTTGACTTTTTATTTTTGGAGGCTACGCCCCTTTAGGCTCCGCCCCTTTATCCTCCCCCTTTACATCTACTCGAAGCTCTGCCTCTTTTCTCTTCCTATGCTCCTCAAACGCCTCTTTGACTTTCTCCTTACTGATATTTGATGCCCTTCTGGCTTTTCGTTTTGACTCCGCCCCTTTTTTAGGTTCAGCGCCTTTAGGCTCCGCCCCTTTCGCCGCCTCCACTTACTTAATTAGTGCTGCTAGATCTTCTCCATAATTTAATTTCTCTTTCTCTTTCTTGAGCGCATCTGCCGGATCAATTTGCCAATATCGATTTGTGGGCGGAGCCTGTGGTGGAGGCCATTGACGTGGCACTTTTCCGGTGCGTCGTGGGGAGACTGCAGATCGAACAGAGTCTGGGACTCGGGAAGACGGATTTTCTGGAAATTTTAGGACAAATGGACATGGACAAGGACAAGGACAAGTTTAGGACAAAGCTTTGGGCAAGACTTGGACAAGACAAATTTTGTTTGAAATTAGACAAAAAACCGACAAAAAATCCCGAACAAAATCACCCAAAAACTTAGAGATGTCCCAAAAACAAATTCAAAAAAATTATTTTTTTTTCAAAAATTCAAAAAACCCCAAAAAGTAGACTAACCATGAGACGGTGGCGGATTCGATGGCACTGGTGGCGGAGCCGTTTGTCTCGAGCCTTGAGAAAATTGAGATGGAGCCGGCGACAGGCGATTTGGGTCGTAGTGGGTCCCGCCGGGTCCCACGCCCCCGCCATAGGTTACGGTCTTTGAGAGGTCCGCACCGAAAGCCGCGTTTGGCACGCCGCGTTGAGCTGGGCTG</canonical>
            <polymorphic>GGGGCGGAGCTTGGAAAGGCACTGGTGTCGCGGTTTTGGAGATTTGAATTGGGGGCGGCGTCGCATATTTTGGAATCGGCTTAAAAATTCCATCGGAGGGCTCGGAGGTCACTTTTGCGGGGCTCGGGGAGCGTACAGGGCTGTGGATTACGGTCCAGTGAATTTGACTTTTTATTTTTGGAGGCTACGCCCCTTTAGGCTCCGCCCCTTTATCCTCCCCCTTTACATCTACTCGAAGCTCTGCCTCTTTTCTCTTCCTATGCTCCTCAAACGCCTCTTTGACTTTCTCCTTACTGATATTTGATGCCCTTCTGGCTTTTCGTTTTGACTCCGCCCCTTTTTTAGGTTCAGCGCCTTTAGGCTCCGCCCCTTTCGCCGCCTCCACTTACTTAATTAGTGCTGCTAGATCTTCTCCATAATTTAATTTCTCTTTCTCTTTCTTGAGCGCATCTGCCGGATCAATTTGCCAATATCGATTTGTGGGCGGAGCCTGTGGTGGRGGCCATTGACGTGGCACTTTTCCGGTGCGTCGTGGGGAGACTGCAGATCGAACAGAGTCTGGGACTCGGGAAGACGGATTTTCTGGAAATTTTAGGACAAATGGACATGGACAAGGACAAGGACAAGTTTAGGACAAAGCTTTGGGCAAGACTTGGACAAGACAAATTTTGTTTGAAATTAGACAAAAAACCGACAAAAAATCCCGAACAAAATCACCCAAAAACTTAGAGATGTCCCAAAAACAAATTCAAAAAAATTATTTTTTTTTCAAAAATTCAAAAAACCCCAAAAAGTAGACTAACCATGAGACGGTGGCGGATTCGATGGCACTGGTGGCGGAGCCGTTTGTCTCGAGCCTTGAGAAAATTGAGATGGAGCCGGCGACAGGCGATTTGGGTCGTAGTGGGTCCCGCCGGGTCCCACGCCCCCGCCATAGGTTACGGTCTTTGAGAGGTCCGCACCGAAAGCCGCGTTTGGCACGCCGCGTTGAGCTGGGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACTTACTTAATTAGTGCTGCTA</pcr_primer_p1>
		<pcr_primer_p2>CTAAACTTGTCCTTGTCCTTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCACTTACTTAATTAGTGCTGCTAGATCTTCTCCATAATTTAATTTCTCTTTCTCTTTCTTGAGCGCATCTGCCGGATCAATTTGCCAATATCGATTTGTGGGCGGAGCCTGTGGTGGAGGCCATTGACGTGGCACTTTTCCGGTGCGTCGTGGGGAGACTGCAGATCGAACAGAGTCTGGGACTCGGGAAGACGGATTTTCTGGAAATTTTAGGACAAATGGACATGGACAAGGACAAGGACAAGTTTAG</canonical_amplicon>
		<polymorphic_amplicon>CCACTTACTTAATTAGTGCTGCTAGATCTTCTCCATAATTTAATTTCTCTTTCTCTTTCTTGAGCGCATCTGCCGGATCAATTTGCCAATATCGATTTGTGGGCGGAGCCTGTGGTGGRGGCCATTGACGTGGCACTTTTCCGGTGCGTCGTGGGGAGACTGCAGATCGAACAGAGTCTGGGACTCGGGAAGACGGATTTTCTGGAAATTTTAGGACAAATGGACATGGACAAGGACAAGGACAAGTTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33871</snp_id>
        <super_contig>c008601274.Contig1</super_contig>
        <contig_pos>39366</contig_pos>
        <strand>+</strand>
        <context>CTGCAGATCG[A/G]ACAGAGTCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGCCATTGACGTGGCACTTTTCCGGTGCGTCGTGGGGAGACTGCAGATCG</left_flank>
        <right_flank>ACAGAGTCTGGGACTCGGGAAGACGGATTTTCTGGAAATTTTAGGACAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGGCGGCGTCGCATATTTTGGAATCGGCTTAAAAATTCCATCGGAGGGCTCGGAGGTCACTTTTGCGGGGCTCGGGGAGCGTACAGGGCTGTGGATTACGGTCCAGTGAATTTGACTTTTTATTTTTGGAGGCTACGCCCCTTTAGGCTCCGCCCCTTTATCCTCCCCCTTTACATCTACTCGAAGCTCTGCCTCTTTTCTCTTCCTATGCTCCTCAAACGCCTCTTTGACTTTCTCCTTACTGATATTTGATGCCCTTCTGGCTTTTCGTTTTGACTCCGCCCCTTTTTTAGGTTCAGCGCCTTTAGGCTCCGCCCCTTTCGCCGCCTCCACTTACTTAATTAGTGCTGCTAGATCTTCTCCATAATTTAATTTCTCTTTCTCTTTCTTGAGCGCATCTGCCGGATCAATTTGCCAATATCGATTTGTGGGCGGAGCCTGTGGTGGAGGCCATTGACGTGGCACTTTTCCGGTGCGTCGTGGGGAGACTGCAGATCGAACAGAGTCTGGGACTCGGGAAGACGGATTTTCTGGAAATTTTAGGACAAATGGACATGGACAAGGACAAGGACAAGTTTAGGACAAAGCTTTGGGCAAGACTTGGACAAGACAAATTTTGTTTGAAATTAGACAAAAAACCGACAAAAAATCCCGAACAAAATCACCCAAAAACTTAGAGATGTCCCAAAAACAAATTCAAAAAAATTATTTTTTTTTCAAAAATTCAAAAAACCCCAAAAAGTAGACTAACCATGAGACGGTGGCGGATTCGATGGCACTGGTGGCGGAGCCGTTTGTCTCGAGCCTTGAGAAAATTGAGATGGAGCCGGCGACAGGCGATTTGGGTCGTAGTGGGTCCCGCCGGGTCCCACGCCCCCGCCATAGGTTACGGTCTTTGAGAGGTCCGCACCGAAAGCCGCGTTTGGCACGCCGCGTTGAGCTGGGCTGAAAAAAAAAATTTCAGACAAAACACAAAAAAAGATGAATGTTCTAGCACAA</canonical>
            <polymorphic>GGGGCGGCGTCGCATATTTTGGAATCGGCTTAAAAATTCCATCGGAGGGCTCGGAGGTCACTTTTGCGGGGCTCGGGGAGCGTACAGGGCTGTGGATTACGGTCCAGTGAATTTGACTTTTTATTTTTGGAGGCTACGCCCCTTTAGGCTCCGCCCCTTTATCCTCCCCCTTTACATCTACTCGAAGCTCTGCCTCTTTTCTCTTCCTATGCTCCTCAAACGCCTCTTTGACTTTCTCCTTACTGATATTTGATGCCCTTCTGGCTTTTCGTTTTGACTCCGCCCCTTTTTTAGGTTCAGCGCCTTTAGGCTCCGCCCCTTTCGCCGCCTCCACTTACTTAATTAGTGCTGCTAGATCTTCTCCATAATTTAATTTCTCTTTCTCTTTCTTGAGCGCATCTGCCGGATCAATTTGCCAATATCGATTTGTGGGCGGAGCCTGTGGTGGAGGCCATTGACGTGGCACTTTTCCGGTGCGTCGTGGGGAGACTGCAGATCGRACAGAGTCTGGGACTCGGGAAGACGGATTTTCTGGAAATTTTAGGACAAATGGACATGGACAAGGACAAGGACAAGTTTAGGACAAAGCTTTGGGCAAGACTTGGACAAGACAAATTTTGTTTGAAATTAGACAAAAAACCGACAAAAAATCCCGAACAAAATCACCCAAAAACTTAGAGATGTCCCAAAAACAAATTCAAAAAAATTATTTTTTTTTCAAAAATTCAAAAAACCCCAAAAAGTAGACTAACCATGAGACGGTGGCGGATTCGATGGCACTGGTGGCGGAGCCGTTTGTCTCGAGCCTTGAGAAAATTGAGATGGAGCCGGCGACAGGCGATTTGGGTCGTAGTGGGTCCCGCCGGGTCCCACGCCCCCGCCATAGGTTACGGTCTTTGAGAGGTCCGCACCGAAAGCCGCGTTTGGCACGCCGCGTTGAGCTGGGCTGAAAAAAAAAATTTCAGACAAAACACAAAAAAAGATGAATGTTCTAGCACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>274 240 198 183 75 30</canonical_bands>
                <polymorphic_bands>349 240 198 183 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACTTACTTAATTAGTGCTGCTA</pcr_primer_p1>
		<pcr_primer_p2>CTAAACTTGTCCTTGTCCTTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCACTTACTTAATTAGTGCTGCTAGATCTTCTCCATAATTTAATTTCTCTTTCTCTTTCTTGAGCGCATCTGCCGGATCAATTTGCCAATATCGATTTGTGGGCGGAGCCTGTGGTGGAGGCCATTGACGTGGCACTTTTCCGGTGCGTCGTGGGGAGACTGCAGATCGAACAGAGTCTGGGACTCGGGAAGACGGATTTTCTGGAAATTTTAGGACAAATGGACATGGACAAGGACAAGGACAAGTTTAG</canonical_amplicon>
		<polymorphic_amplicon>CCACTTACTTAATTAGTGCTGCTAGATCTTCTCCATAATTTAATTTCTCTTTCTCTTTCTTGAGCGCATCTGCCGGATCAATTTGCCAATATCGATTTGTGGGCGGAGCCTGTGGTGGAGGCCATTGACGTGGCACTTTTCCGGTGCGTCGTGGGGAGACTGCAGATCGRACAGAGTCTGGGACTCGGGAAGACGGATTTTCTGGAAATTTTAGGACAAATGGACATGGACAAGGACAAGGACAAGTTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33872</snp_id>
        <super_contig>c008601279.Contig1</super_contig>
        <contig_pos>6401</contig_pos>
        <strand></strand>
        <context>TACAGTTAAA[A/C]GGCCAGTATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTATTTTTAGAAAGTAACCTTGCTTCTCATAAGGCGATATTACAGTTAAA</left_flank>
        <right_flank>GGCCAGTATTCTATGCCGTTTGATGTATTGAAAGATAGAAAGAGCAAAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCTAGAAATTAATAGTAATAGTTCAGAAATGGGAAATTCCGCTAAGAAAAAATCGGTCAAAAGCAGATTGGCCCGGCAAGCCAACGGCCGGTTGGCCCAGATCAAAAGAGCAGAAAAATTAGAGAGAAGAAACTTGGAAATATCCGTCGAAATAGAAGACAAAAAAAATTTTATCCAAGATATAATTGTTTCTATGGCTTTGATATCGATAGATCTTTCTGAATTCCGCGAGAACTTAGACAAAAAGAATGTTGAGATGGATTCTGTTTTGAAATCGCTAGATGAGAAAGAAATGGAAATAAAACTGGCTGAAAGTGAACTTCGACGGTTGAAAGATCAGCGGCTGTATATGATAAACGAAAACAAAAGGCGAGAAAAACAGTTTCAGAAGAAAATCGAAATTGAGAAACGCGAAATTCAGAAGAGAAACGAAAGTGACAAGGTATTTTATTTTTAGAAAGTAACCTTGCTTCTCATAAGGCGATATTACAGTTAAAAGGCCAGTATTCTATGCCGTTTGATGTATTGAAAGATAGAAAGAGCAAAGTGAATCGATGCAAAGACGTCATCAAATATATCCAACAAGTCGTGTTATCAAATTCTGTTGAGCGATTTCTCAATTTTTTTTTCACCTTTCTGAACGATTCGGATGAATATCAATTTCGATATCAGCTCACTGACGAGGAAACATATTTTGCGAAGCTTCGTTTTCATCTCCCAGATTCATTTTTTAGATCCTTCCAGAAATTCTATTCTCAAATGACTTCTTTCACTTTATTCTCGTCTCGGCACGATATTTCAAAAATTCAAAAGGAACTGTCACTAAATCGTTACTATACTGTTGAATCAGATCAGATCAAAAGAAGGACCCTTTCTGGAGGATTGACAACAGTAAAACGTCCTCTTGTCTTTATCAATGCGTTATCAGAAGTTCTAACTATTCGATTATCTACTATGGCTCGACATTCTAAACTTGAATTCAATGAGTCAACCGGAGA</canonical>
            <polymorphic>TTCCTAGAAATTAATAGTAATAGTTCAGAAATGGGAAATTCCGCTAAGAAAAAATCGGTCAAAAGCAGATTGGCCCGGCAAGCCAACGGCCGGTTGGCCCAGATCAAAAGAGCAGAAAAATTAGAGAGAAGAAACTTGGAAATATCCGTCGAAATAGAAGACAAAAAAAATTTTATCCAAGATATAATTGTTTCTATGGCTTTGATATCGATAGATCTTTCTGAATTCCGCGAGAACTTAGACAAAAAGAATGTTGAGATGGATTCTGTTTTGAAATCGCTAGATGAGAAAGAAATGGAAATAAAACTGGCTGAAAGTGAACTTCGACGGTTGAAAGATCAGCGGCTGTATATGATAAACGAAAACAAAAGGCGAGAAAAACAGTTTCAGAAGAAAATCGAAATTGAGAAACGCGAAATTCAGAAGAGAAACGAAAGTGACAAGGTATTTTATTTTTAGAAAGTAACCTTGCTTCTCATAAGGCGATATTACAGTTAAAMGGCCAGTATTCTATGCCGTTTGATGTATTGAAAGATAGAAAGAGCAAAGTGAATCGATGCAAAGACGTCATCAAATATATCCAACAAGTCGTGTTATCAAATTCTGTTGAGCGATTTCTCAATTTTTTTTTCACCTTTCTGAACGATTCGGATGAATATCAATTTCGATATCAGCTCACTGACGAGGAAACATATTTTGCGAAGCTTCGTTTTCATCTCCCAGATTCATTTTTTAGATCCTTCCAGAAATTCTATTCTCAAATGACTTCTTTCACTTTATTCTCGTCTCGGCACGATATTTCAAAAATTCAAAAGGAACTGTCACTAAATCGTTACTATACTGTTGAATCAGATCAGATCAAAAGAAGGACCCTTTCTGGAGGATTGACAACAGTAAAACGTCCTCTTGTCTTTATCAATGCGTTATCAGAAGTTCTAACTATTCGATTATCTACTATGGCTCGACATTCTAAACTTGAATTCAATGAGTCAACCGGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCTGTATATGATAAACGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>ACGACTTGTTGGATATATTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGCTGTATATGATAAACGAAAACAAAAGGCGAGAAAAACAGTTTCAGAAGAAAATCGAAATTGAGAAACGCGAAATTCAGAAGAGAAACGAAAGTGACAAGGTATTTTATTTTTAGAAAGTAACCTTGCTTCTCATAAGGCGATATTACAGTTAAAAGGCCAGTATTCTATGCCGTTTGATGTATTGAAAGATAGAAAGAGCAAAGTGAATCGATGCAAAGACGTCATCAAATATATCCAACAAGTCGT</canonical_amplicon>
		<polymorphic_amplicon>GGCTGTATATGATAAACGAAAACAAAAGGCGAGAAAAACAGTTTCAGAAGAAAATCGAAATTGAGAAACGCGAAATTCAGAAGAGAAACGAAAGTGACAAGGTATTTTATTTTTAGAAAGTAACCTTGCTTCTCATAAGGCGATATTACAGTTAAAMGGCCAGTATTCTATGCCGTTTGATGTATTGAAAGATAGAAAGAGCAAAGTGAATCGATGCAAAGACGTCATCAAATATATCCAACAAGTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33873</snp_id>
        <super_contig>c008601279.Contig1</super_contig>
        <contig_pos>6523</contig_pos>
        <strand></strand>
        <context>CGATTTCTCA[A/G]TTTTTTYTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAATATATCCAACAAGTCGTGTTATCAAATTCTGTTGAGCGATTTCTCA</left_flank>
        <right_flank>TTTTTTTTTCACCTTTCTGAACGATTCGGATGAATATCAATTTCGATATC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGAGAAGAAACTTGGAAATATCCGTCGAAATAGAAGACAAAAAAAATTTTATCCAAGATATAATTGTTTCTATGGCTTTGATATCGATAGATCTTTCTGAATTCCGCGAGAACTTAGACAAAAAGAATGTTGAGATGGATTCTGTTTTGAAATCGCTAGATGAGAAAGAAATGGAAATAAAACTGGCTGAAAGTGAACTTCGACGGTTGAAAGATCAGCGGCTGTATATGATAAACGAAAACAAAAGGCGAGAAAAACAGTTTCAGAAGAAAATCGAAATTGAGAAACGCGAAATTCAGAAGAGAAACGAAAGTGACAAGGTATTTTATTTTTAGAAAGTAACCTTGCTTCTCATAAGGCGATATTACAGTTAAAAGGCCAGTATTCTATGCCGTTTGATGTATTGAAAGATAGAAAGAGCAAAGTGAATCGATGCAAAGACGTCATCAAATATATCCAACAAGTCGTGTTATCAAATTCTGTTGAGCGATTTCTCAATTTTTTTTTCACCTTTCTGAACGATTCGGATGAATATCAATTTCGATATCAGCTCACTGACGAGGAAACATATTTTGCGAAGCTTCGTTTTCATCTCCCAGATTCATTTTTTAGATCCTTCCAGAAATTCTATTCTCAAATGACTTCTTTCACTTTATTCTCGTCTCGGCACGATATTTCAAAAATTCAAAAGGAACTGTCACTAAATCGTTACTATACTGTTGAATCAGATCAGATCAAAAGAAGGACCCTTTCTGGAGGATTGACAACAGTAAAACGTCCTCTTGTCTTTATCAATGCGTTATCAGAAGTTCTAACTATTCGATTATCTACTATGGCTCGACATTCTAAACTTGAATTCAATGAGTCAACCGGAGATGACATTTGCGTAGCATTAGGTGGAGATAAAGGCGGAGAAGAGACGAAGTTGTTCCTCATTTTTGAGAATATCCAAAAGCCAAATGATTCGCGGGGAATGTTGCTTCTAGGACTTTATACGG</canonical>
            <polymorphic>AGAGAGAAGAAACTTGGAAATATCCGTCGAAATAGAAGACAAAAAAAATTTTATCCAAGATATAATTGTTTCTATGGCTTTGATATCGATAGATCTTTCTGAATTCCGCGAGAACTTAGACAAAAAGAATGTTGAGATGGATTCTGTTTTGAAATCGCTAGATGAGAAAGAAATGGAAATAAAACTGGCTGAAAGTGAACTTCGACGGTTGAAAGATCAGCGGCTGTATATGATAAACGAAAACAAAAGGCGAGAAAAACAGTTTCAGAAGAAAATCGAAATTGAGAAACGCGAAATTCAGAAGAGAAACGAAAGTGACAAGGTATTTTATTTTTAGAAAGTAACCTTGCTTCTCATAAGGCGATATTACAGTTAAAAGGCCAGTATTCTATGCCGTTTGATGTATTGAAAGATAGAAAGAGCAAAGTGAATCGATGCAAAGACGTCATCAAATATATCCAACAAGTCGTGTTATCAAATTCTGTTGAGCGATTTCTCARTTTTTTTTTCACCTTTCTGAACGATTCGGATGAATATCAATTTCGATATCAGCTCACTGACGAGGAAACATATTTTGCGAAGCTTCGTTTTCATCTCCCAGATTCATTTTTTAGATCCTTCCAGAAATTCTATTCTCAAATGACTTCTTTCACTTTATTCTCGTCTCGGCACGATATTTCAAAAATTCAAAAGGAACTGTCACTAAATCGTTACTATACTGTTGAATCAGATCAGATCAAAAGAAGGACCCTTTCTGGAGGATTGACAACAGTAAAACGTCCTCTTGTCTTTATCAATGCGTTATCAGAAGTTCTAACTATTCGATTATCTACTATGGCTCGACATTCTAAACTTGAATTCAATGAGTCAACCGGAGATGACATTTGCGTAGCATTAGGTGGAGATAAAGGCGGAGAAGAGACGAAGTTGTTCCTCATTTTTGAGAATATCCAAAAGCCAAATGATTCGCGGGGAATGTTGCTTCTAGGACTTTATACGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>183 178 173 144 87 58 46 40 38 21 17 15</canonical_bands>
                <polymorphic_bands>183 178 173 144 87 61 58 46 38 17 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAAGATAGAAAGAGCAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>AAAGTGAAAGAAGTCATTTGAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAAAGATAGAAAGAGCAAAGTGAATCGATGCAAAGACGTCATCAAATATATCCAACAAGTCGTGTTATCAAATTCTGTTGAGCGATTTCTCAATTTTTTTTTCACCTTTCTGAACGATTCGGATGAATATCAATTTCGATATCAGCTCACTGACGAGGAAACATATTTTGCGAAGCTTCGTTTTCATCTCCCAGATTCATTTTTTAGATCCTTCCAGAAATTCTATTCTCAAATGACTTCTTTCACTTT</canonical_amplicon>
		<polymorphic_amplicon>TGAAAGATAGAAAGAGCAAAGTGAATCGATGCAAAGACGTCATCAAATATATCCAACAAGTCGTGTTATCAAATTCTGTTGAGCGATTTCTCARTTTTTTTTTCACCTTTCTGAACGATTCGGATGAATATCAATTTCGATATCAGCTCACTGACGAGGAAACATATTTTGCGAAGCTTCGTTTTCATCTCCCAGATTCATTTTTTAGATCCTTCCAGAAATTCTATTCTCAAATGACTTCTTTCACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33874</snp_id>
        <super_contig>c008601279.Contig1</super_contig>
        <contig_pos>6530</contig_pos>
        <strand></strand>
        <context>TCARTTTTTT[T/C]TTCACCTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATCCAACAAGTCGTGTTATCAAATTCTGTTGAGCGATTTCTCAATTTTTT</left_flank>
        <right_flank>TTCACCTTTCTGAACGATTCGGATGAATATCAATTTCGATATCAGCTCAC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAACTTGGAAATATCCGTCGAAATAGAAGACAAAAAAAATTTTATCCAAGATATAATTGTTTCTATGGCTTTGATATCGATAGATCTTTCTGAATTCCGCGAGAACTTAGACAAAAAGAATGTTGAGATGGATTCTGTTTTGAAATCGCTAGATGAGAAAGAAATGGAAATAAAACTGGCTGAAAGTGAACTTCGACGGTTGAAAGATCAGCGGCTGTATATGATAAACGAAAACAAAAGGCGAGAAAAACAGTTTCAGAAGAAAATCGAAATTGAGAAACGCGAAATTCAGAAGAGAAACGAAAGTGACAAGGTATTTTATTTTTAGAAAGTAACCTTGCTTCTCATAAGGCGATATTACAGTTAAAAGGCCAGTATTCTATGCCGTTTGATGTATTGAAAGATAGAAAGAGCAAAGTGAATCGATGCAAAGACGTCATCAAATATATCCAACAAGTCGTGTTATCAAATTCTGTTGAGCGATTTCTCAATTTTTTTTTCACCTTTCTGAACGATTCGGATGAATATCAATTTCGATATCAGCTCACTGACGAGGAAACATATTTTGCGAAGCTTCGTTTTCATCTCCCAGATTCATTTTTTAGATCCTTCCAGAAATTCTATTCTCAAATGACTTCTTTCACTTTATTCTCGTCTCGGCACGATATTTCAAAAATTCAAAAGGAACTGTCACTAAATCGTTACTATACTGTTGAATCAGATCAGATCAAAAGAAGGACCCTTTCTGGAGGATTGACAACAGTAAAACGTCCTCTTGTCTTTATCAATGCGTTATCAGAAGTTCTAACTATTCGATTATCTACTATGGCTCGACATTCTAAACTTGAATTCAATGAGTCAACCGGAGATGACATTTGCGTAGCATTAGGTGGAGATAAAGGCGGAGAAGAGACGAAGTTGTTCCTCATTTTTGAGAATATCCAAAAGCCAAATGATTCGCGGGGAATGTTGCTTCTAGGACTTTATACGGGCGATGA</canonical>
            <polymorphic>AGAAACTTGGAAATATCCGTCGAAATAGAAGACAAAAAAAATTTTATCCAAGATATAATTGTTTCTATGGCTTTGATATCGATAGATCTTTCTGAATTCCGCGAGAACTTAGACAAAAAGAATGTTGAGATGGATTCTGTTTTGAAATCGCTAGATGAGAAAGAAATGGAAATAAAACTGGCTGAAAGTGAACTTCGACGGTTGAAAGATCAGCGGCTGTATATGATAAACGAAAACAAAAGGCGAGAAAAACAGTTTCAGAAGAAAATCGAAATTGAGAAACGCGAAATTCAGAAGAGAAACGAAAGTGACAAGGTATTTTATTTTTAGAAAGTAACCTTGCTTCTCATAAGGCGATATTACAGTTAAAAGGCCAGTATTCTATGCCGTTTGATGTATTGAAAGATAGAAAGAGCAAAGTGAATCGATGCAAAGACGTCATCAAATATATCCAACAAGTCGTGTTATCAAATTCTGTTGAGCGATTTCTCAATTTTTTYTTCACCTTTCTGAACGATTCGGATGAATATCAATTTCGATATCAGCTCACTGACGAGGAAACATATTTTGCGAAGCTTCGTTTTCATCTCCCAGATTCATTTTTTAGATCCTTCCAGAAATTCTATTCTCAAATGACTTCTTTCACTTTATTCTCGTCTCGGCACGATATTTCAAAAATTCAAAAGGAACTGTCACTAAATCGTTACTATACTGTTGAATCAGATCAGATCAAAAGAAGGACCCTTTCTGGAGGATTGACAACAGTAAAACGTCCTCTTGTCTTTATCAATGCGTTATCAGAAGTTCTAACTATTCGATTATCTACTATGGCTCGACATTCTAAACTTGAATTCAATGAGTCAACCGGAGATGACATTTGCGTAGCATTAGGTGGAGATAAAGGCGGAGAAGAGACGAAGTTGTTCCTCATTTTTGAGAATATCCAAAAGCCAAATGATTCGCGGGGAATGTTGCTTCTAGGACTTTATACGGGCGATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAGATAGAAAGAGCAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>AAAGTGAAAGAAGTCATTTGAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAAAGATAGAAAGAGCAAAGTGAATCGATGCAAAGACGTCATCAAATATATCCAACAAGTCGTGTTATCAAATTCTGTTGAGCGATTTCTCAATTTTTTTTTCACCTTTCTGAACGATTCGGATGAATATCAATTTCGATATCAGCTCACTGACGAGGAAACATATTTTGCGAAGCTTCGTTTTCATCTCCCAGATTCATTTTTTAGATCCTTCCAGAAATTCTATTCTCAAATGACTTCTTTCACTTT</canonical_amplicon>
		<polymorphic_amplicon>TGAAAGATAGAAAGAGCAAAGTGAATCGATGCAAAGACGTCATCAAATATATCCAACAAGTCGTGTTATCAAATTCTGTTGAGCGATTTCTCAATTTTTTYTTCACCTTTCTGAACGATTCGGATGAATATCAATTTCGATATCAGCTCACTGACGAGGAAACATATTTTGCGAAGCTTCGTTTTCATCTCCCAGATTCATTTTTTAGATCCTTCCAGAAATTCTATTCTCAAATGACTTCTTTCACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33875</snp_id>
        <super_contig>c008601286.Contig1</super_contig>
        <contig_pos>5186</contig_pos>
        <strand>+</strand>
        <context>ATTCTAATTC[C/T]AAAAAAACCA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTATTCTAATATCTCTTCGTTTGTATTCTCACTATGTTCTATTCTAATTC</left_flank>
        <right_flank>AAAAAAACCAAATTTCTTCTCTAGCAACAGGAACATTTCCTAGTTCTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCGGGCCCTAGAAAATTAAAATATGAAGAAGAATCGGAATCCAATTTATTTTCTTTCCTCTATACAGGCTTTTTTAGCTTATATGCCATATCTTCTTGACCTAGAATATTTCTCTTTTATCTTGGCCAAAGATATTCAAAATCATTTATTCCATCTATACCATATCCAATTGATTGAACACACCTCGTTTTTGTTATTAACGAGAATCGGTTCAACCTATCGGAATCGCATAGGGATTATAATGTTGTTCGATGCGAAACTATGCGTATTCCTCAATTCTATCCCTACTATTTTAACTGTTTCATTTCAGATTCGTATTACGGCTTCTCCTCCAAATGACTTAAAAACAAGAAGAAGAAAATACCAGGACAGCAATGACAATCTGGTGAGCTTTATTAAATTTGGATGAATATATTCTTGGTTGATCTGTAGTTCTTTTTTTGTTTCTGTATTCTAATATCTCTTCGTTTGTATTCTCACTATGTTCTATTCTAATTCAAAAAAAACCAAATTTCTTCTCTAGCAACAGGAACATTTCCTAGTTCTTTGACCCACTTCGCAGTTATTCAAAACTGACCGGTACTTATATTCAATGTTTCCCATCTCACATTCATTGTTTCTTGAAGAAGCGACTTTCGAAATTTCTCGGTCAATGCATTTGAATAGGCGGAACATTGTTAGCATTTCAATGGGTCCTTTTTTTGGAGCCACAATTGTCTGCGCTAATTTTATGCGAGCTTCAAAAAACATCTGGCTGATTGTCTTTAAATAAGAAGGTCCTTGTTTTCTTTTTCTCTATTCTTTTTTATCGAACATTCCAGAATTTTAGTCATGTGCGCCACTGAATATTTCATAACCCAATTTATGGCTCGAAATTCTCGACATTCAGTTGCGCGTCAGTTTCAGTGCTTGCGTACGATGCACACAACTTTCCGCCGAATTTCTTTCCACCAACATCCAAGAAACGCAAGGAAATTGTTCATTTCCGACTCGAGAGTC</canonical>
            <polymorphic>CCCGGGCCCTAGAAAATTAAAATATGAAGAAGAATCGGAATCCAATTTATTTTCTTTCCTCTATACAGGCTTTTTTAGCTTATATGCCATATCTTCTTGACCTAGAATATTTCTCTTTTATCTTGGCCAAAGATATTCAAAATCATTTATTCCATCTATACCATATCCAATTGATTGAACACACCTCGTTTTTGTTATTAACGAGAATCGGTTCAACCTATCGGAATCGCATAGGGATTATAATGTTGTTCGATGCGAAACTATGCGTATTCCTCAATTCTATCCCTACTATTTTAACTGTTTCATTTCAGATTCGTATTACGGCTTCTCCTCCAAATGACTTAAAAACAAGAAGAAGAAAATACCAGGACAGCAATGACAATCTGGTGAGCTTTATTAAATTTGGATGAATATATTCTTGGTTGATCTGTAGTTCTTTTTTTGTTTCTGTATTCTAATATCTCTTCGTTTGTATTCTCACTATGTTCTATTCTAATTCYAAAAAAACCAAATTTCTTCTCTAGCAACAGGAACATTTCCTAGTTCTTTGACCCACTTCGCAGTTATTCAAAACTGACCGGTACTTATATTCAATGTTTCCCATCTCACATTCATTGTTTCTTGAAGAAGCGACTTTCGAAATTTCTCGGTCAATGCATTTGAATAGGCGGAACATTGTTAGCATTTCAATGGGTCCTTTTTTTGGAGCCACAATTGTCTGCGCTAATTTTATGCGAGCTTCAAAAAACATCTGGCTGATTGTCTTTAAATAAGAAGGTCCTTGTTTTCTTTTTCTCTATTCTTTTTTATCGAACATTCCAGAATTTTAGTCATGTGCGCCACTGAATATTTCATAACCCAATTTATGGCTCGAAATTCTCGACATTCAGTTGCGCGTCAGTTTCAGTGCTTGCGTACGATGCACACAACTTTCCGCCGAATTTCTTTCCACCAACATCCAAGAAACGCAAGGAAATTGTTCATTTCCGACTCGAGAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGAAGAAGAAAATACCAGGAC</pcr_primer_p1>
		<pcr_primer_p2>CATTGAATATAAGTACCGGTCAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAAGAAGAAGAAAATACCAGGACAGCAATGACAATCTGGTGAGCTTTATTAAATTTGGATGAATATATTCTTGGTTGATCTGTAGTTCTTTTTTTGTTTCTGTATTCTAATATCTCTTCGTTTGTATTCTCACTATGTTCTATTCTAATTCAAAAAAAACCAAATTTCTTCTCTAGCAACAGGAACATTTCCTAGTTCTTTGACCCACTTCGCAGTTATTCAAAACTGACCGGTACTTATATTCAATG</canonical_amplicon>
		<polymorphic_amplicon>CAAGAAGAAGAAAATACCAGGACAGCAATGACAATCTGGTGAGCTTTATTAAATTTGGATGAATATATTCTTGGTTGATCTGTAGTTCTTTTTTTGTTTCTGTATTCTAATATCTCTTCGTTTGTATTCTCACTATGTTCTATTCTAATTCYAAAAAAACCAAATTTCTTCTCTAGCAACAGGAACATTTCCTAGTTCTTTGACCCACTTCGCAGTTATTCAAAACTGACCGGTACTTATATTCAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33876</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>15822</contig_pos>
        <strand></strand>
        <context>ctttatcatt[T/G]ttcaattttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GCAGAAAAAGGGTTATCAAAGTTAGGTGTCTACAAAACTACTTTATCATT</left_flank>
        <right_flank>TTCAATTTTTCTGAAAATCCTAGAATACACTAAACAAAACTAGTGCTTCA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTCAGAAATTCTGTTTTCGAAGATTCAGATTCTCCGAGAATAGCAGAACTCTGAAAAATCCCAATTTTGGAAATCACAGAAACTTCTAGAAATCTTGAAAACAGCAATTGTTATTGATGTCGATTGATAGCAAATTAAGGCTAATCAATTTAAACATTGATACACTAAGAGATTAATGTGGCATCAAATCTGTTATTTTGTTTCTTATTTTGTAAAATTTTCTATCTAAACTTTTTTATATTCGTTAGTTGTGCCTTGTGAATTTACACCTAAAATTTCCAGCTTTCCATAATACAGCTGTCAAAAATCGAGAGTTTCATGTGCCGGAAAAATCAACTCAAACTTTTTCGATTTGTTTGAAAGTTTCAGAACATACTAAACAAAAACTAGAACTTCATTTTTGTAGTTGACAACTTTTTTGTGAAATTTGGGCCTAAAGGGGATATGCAGAAAAAGGGTTATCAAAGTTAGGTGTCTACAAAACTACTTTATCATTTTTCAATTTTTCTGAAAATCCTAGAATACACTAAACAAAACTAGTGCTTCATTTTAGTAGTTGACAACTTTTTTGTAAAATTGAAGCCTAAGGGAGATATCGAGATCATTTAGGTCGAAAATAAGGGTAGCATTGTCAATCGCGTAGCTCAGTAGCGGCGTTCGCTTTGAGCTTAATTACCTCGGTTTCTATAAAATATATCAAAATTTTGTCAACTAATAAAATGTTTATCATAATATCAGCAACATTTTATCAGTTAAAACTTTTTGATATCTCTTACAGTAACCCTTCAAATTAACTTTTCCCACCTTTTATCAAAAGACTCACCTGTGAGCACGACGCGAGCAGTGGTACCCGTTGAACCAGTGATTGATCAGACATCTTGGAGTCAATTCCTGTAGAATTTCACAGATTTTGTTGTCCAAGAAACCTGAATTTTGAGAACAGAAAGGATATGAATAGAGACGAAAGGCGGAGATTGCGCCCTAAGATAAGAGGAGA</canonical>
            <polymorphic>AAGTTCAGAAATTCTGTTTTCGAAGATTCAGATTCTCCGAGAATAGCAGAACTCTGAAAAATCCCAATTTTGGAAATCACAGAAACTTCTAGAAATCTTGAAAACAGCAATTGTTATTGATGTCGATTGATAGCAAATTAAGGCTAATCAATTTAAACATTGATACACTAAGAGATTAATGTGGCATCAAATCTGTTATTTTGTTTCTTATTTTGTAAAATTTTCTATCTAAACTTTTTTATATTCGTTAGTTGTGCCTTGTGAATTTACACCTAAAATTTCCAGCTTTCCATAATACAGCTGTCAAAAATCGAGAGTTTCATGTGCCGGAAAAATCAACTCAAACTTTTTCGATTTGTTTGAAAGTTTCAGAACATACTAAACAAAAACTAGAACTTCATTTTTGTAGTTGACAACTTTTTTGTGAAATTTGGGCCTAAAGGGGATATGCAGAAAAAGGGTTATCAAAGTTAGGTGTCTACAAAACTACTTTATCATTKTTCAATTTTTCTGAAAATCCTAGAATACACTAAACAAAACTAGTGCTTCATTTTAGTAGTTGACAACTTTTTTGTAAAATTGAAGCCTAAGGGAGATATCGAGATCATTTAGGTCGAAAATAAGGGTAGCATTGTCAATCGCGTAGCTCAGTAGCGGCGTTCGCTTTGAGCTTAATTACCTCGGTTTCTATAAAATATATCAAAATTTTGTCAACTAATAAAATGTTTATCATAATATCAGCAACATTTTATCAGTTAAAACTTTTTGATATCTCTTACAGTAACCCTTCAAATTAACTTTTCCCACCTTTTATCAAAAGACTCACCTGTGAGCACGACGCGAGCAGTGGTACCCGTTGAACCAGTGATTGATCAGACATCTTGGAGTCAATTCCTGTAGAATTTCACAGATTTTGTTGTCCAAGAAACCTGAATTTTGAGAACAGAAAGGATATGAATAGAGACGAAAGGCGGAGATTGCGCCCTAAGATAAGAGGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCTGTCAAAAATCGAGAG</pcr_primer_p1>
		<pcr_primer_p2>TTATTTTCGACCTAAATGATCTC</pcr_primer_p2>
		<pcr_amplicon_size>326</pcr_amplicon_size>
		<canonical_amplicon>CAGCTGTCAAAAATCGAGAGTTTCATGTGCCGGAAAAATCAACTCAAACTTTTTCGATTTGTTTGAAAGTTTCAGAACATACTAAACAAAAACTAGAACTTCATTTTTGTAGTTGACAACTTTTTTGTGAAATTTGGGCCTAAAGGGGATATGCAGAAAAAGGGTTATCAAAGTTAGGTGTCTACAAAACTACTTTATCATTTTTCAATTTTTCTGAAAATCCTAGAATACACTAAACAAAACTAGTGCTTCATTTTAGTAGTTGACAACTTTTTTGTAAAATTGAAGCCTAAGGGAGATATCGAGATCATTTAGGTCGAAAATAA</canonical_amplicon>
		<polymorphic_amplicon>CAGCTGTCAAAAATCGAGAGTTTCATGTGCCGGAAAAATCAACTCAAACTTTTTCGATTTGTTTGAAAGTTTCAGAACATACTAAACAAAAACTAGAACTTCATTTTTGTAGTTGACAACTTTTTTGTGAAATTTGGGCCTAAAGGGGATATGCAGAAAAAGGGTTATCAAAGTTAGGTGTCTACAAAACTACTTTATCATTKTTCAATTTTTCTGAAAATCCTAGAATACACTAAACAAAACTAGTGCTTCATTTTAGTAGTTGACAACTTTTTTGTAAAATTGAAGCCTAAGGGAGATATCGAGATCATTTAGGTCGAAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33877</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>29885</contig_pos>
        <strand>+</strand>
        <context>TTTTTCAAAT[A/T]TTTTCGGGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGGAGCGATGGCGAAATCGGATTTGCGCGGGAGCCATGTGTTTTTCAAAT</left_flank>
        <right_flank>TTTTCGGGGGGATTTTCAGCGATTTCCATGATTTTTTAAAGAAAAAATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGACTGGACACCCGTGTAGTTTTGCTCCTGTACTTGTGCCCGGTGCATTCTTCTCTTCTTCTGAAATTGCAAAAAATTGGAAAAATCTAGAAGTTTCCAGATTTTCCCACCTTTTTTCTTCATTTTCTCGGCCATCTCCCTGCCTTTCTTCATCATATCTTCGACACTGACACATGCTCGACACGGCTTTCCATCTGGACCGATTTCCATTCTGAAATTCAAAAAAAATGATGCAAAAAGTCCGAAATAGACTGAAATTTGATGAAAAATAGGTTTTCCAAACCGAAAAATTGTTTGGAAATCGATAAAAATAGTGAGGAACTCGAAAAAAATAGAGTTTAGAACTGAAATTTCTACTTTTAAATGCTGAAATATAAATTCTAAAAAAAGCGAAAAATGCAAACGCGCTTCACCTGCACTGGCGAGAGAGTGGAGGCGCCAGAGAAACAGGAGCGATGGCGAAATCGGATTTGCGCGGGAGCCATGTGTTTTTCAAATTTTTTCGGGGGGATTTTCAGCGATTTCCATGATTTTTTAAAGAAAAAATAAATAAAGAAAAGCCGGGGGAATTTGAAATTTCAGGGAAAAAACAAGATAAATAATCGGATATTTATTGAATTTGATTTTTCAAAAAAAAAATTTTTTTTCGAGGCGAAAAAATCTTAAAAAAACAGATTTTTACTATTTGTTTGCACCCAGCTCCTCCTCCACTCCTCGAAAAAAATAGAGTTTAGAACTGAAATTTCTACTTTTAAATGCTGAAATATAAATTCTAAAAAAAGCGAAAAATGCAAACGCGCTTCACCTGCACTGGCGAGAGAGTGGAGGCGCCAGAGAAACGGGAGCGATGGCGAAATCGGATTTGCGCGGGAGCCATGTGTTTTTCAAATATTTCGGGGGGATTTTCAGCGATTTCCATGATTTTTTAAAGAAAAAATAAATAAAGAAAAGCCGGGGGAATTTGAAATTCCAGGGAAAAAACAAGATAAATAATCGGAT</canonical>
            <polymorphic>TCGACTGGACACCCGTGTAGTTTTGCTCCTGTACTTGTGCCCGGTGCATTCTTCTCTTCTTCTGAAATTGCAAAAAATTGGAAAAATCTAGAAGTTTCCAGATTTTCCCACCTTTTTTCTTCATTTTCTCGGCCATCTCCCTGCCTTTCTTCATCATATCTTCGACACTGACACATGCTCGACACGGCTTTCCATCTGGACCGATTTCCATTCTGAAATTCAAAAAAAATGATGCAAAAAGTCCGAAATAGACTGAAATTTGATGAAAAATAGGTTTTCCAAACCGAAAAATTGTTTGGAAATCGATAAAAATAGTGAGGAACTCGAAAAAAATAGAGTTTAGAACTGAAATTTCTACTTTTAAATGCTGAAATATAAATTCTAAAAAAAGCGAAAAATGCAAACGCGCTTCACCTGCACTGGCGAGAGAGTGGAGGCGCCAGAGAAACAGGAGCGATGGCGAAATCGGATTTGCGCGGGAGCCATGTGTTTTTCAAATWTTTTCGGGGGGATTTTCAGCGATTTCCATGATTTTTTAAAGAAAAAATAAATAAAGAAAAGCCGGGGGAATTTGAAATTTCAGGGAAAAAACAAGATAAATAATCGGATATTTATTGAATTTGATTTTTCAAAAAAAAAATTTTTTTTCGAGGCGAAAAAATCTTAAAAAAACAGATTTTTACTATTTGTTTGCACCCAGCTCCTCCTCCACTCCTCGAAAAAAATAGAGTTTAGAACTGAAATTTCTACTTTTAAATGCTGAAATATAAATTCTAAAAAAAGCGAAAAATGCAAACGCGCTTCACCTGCACTGGCGAGAGAGTGGAGGCGCCAGAGAAACGGGAGCGATGGCGAAATCGGATTTGCGCGGGAGCCATGTGTTTTTCAAATATTTCGGGGGGATTTTCAGCGATTTCCATGATTTTTTAAAGAAAAAATAAATAAAGAAAAGCCGGGGGAATTTGAAATTCCAGGGAAAAAACAAGATAAATAATCGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>216 190 119 103 93 72 42 40 34 28 28 21 7 7</canonical_bands>
                <polymorphic_bands>216 191 190 103 93 42 40 34 28 28 21 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>190 141 119 103 72 65 60 42 40 34 33 28 28 21 10 7 7</canonical_bands>
                <polymorphic_bands>191 190 141 103 65 60 42 40 34 33 28 28 21 10 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATAGTGAGGAACTCGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCGGCTTTTCTTTATTTATTT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AAATAGTGAGGAACTCGAAAAAAATAGAGTTTAGAACTGAAATTTCTACTTTTAAATGCTGAAATATAAATTCTAAAAAAAGCGAAAAATGCAAACGCGCTTCACCTGCACTGGCGAGAGAGTGGAGGCGCCAGAGAAACAGGAGCGATGGCGAAATCGGATTTGCGCGGGAGCCATGTGTTTTTCAAATTTTTTCGGGGGGATTTTCAGCGATTTCCATGATTTTTTAAAGAAAAAATAAATAAAGAAAAGCCGG</canonical_amplicon>
		<polymorphic_amplicon>AAATAGTGAGGAACTCGAAAAAAATAGAGTTTAGAACTGAAATTTCTACTTTTAAATGCTGAAATATAAATTCTAAAAAAAGCGAAAAATGCAAACGCGCTTCACCTGCACTGGCGAGAGAGTGGAGGCGCCAGAGAAACAGGAGCGATGGCGAAATCGGATTTGCGCGGGAGCCATGTGTTTTTCAAATWTTTTCGGGGGGATTTTCAGCGATTTCCATGATTTTTTAAAGAAAAAATAAATAAAGAAAAGCCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33878</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>30010</contig_pos>
        <strand>+</strand>
        <context>TTGAATTTGA[C/T]TTTTCAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTTCAGGGAAAAAACAAGATAAATAATCGGATATTTATTGAATTTGA</left_flank>
        <right_flank>TTTTCAAAAAAAAAATTTTTTTTCGAGGCGAAAAAATCTTAAAAAAACAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTCGGCCATCTCCCTGCCTTTCTTCATCATATCTTCGACACTGACACATGCTCGACACGGCTTTCCATCTGGACCGATTTCCATTCTGAAATTCAAAAAAAATGATGCAAAAAGTCCGAAATAGACTGAAATTTGATGAAAAATAGGTTTTCCAAACCGAAAAATTGTTTGGAAATCGATAAAAATAGTGAGGAACTCGAAAAAAATAGAGTTTAGAACTGAAATTTCTACTTTTAAATGCTGAAATATAAATTCTAAAAAAAGCGAAAAATGCAAACGCGCTTCACCTGCACTGGCGAGAGAGTGGAGGCGCCAGAGAAACAGGAGCGATGGCGAAATCGGATTTGCGCGGGAGCCATGTGTTTTTCAAATTTTTTCGGGGGGATTTTCAGCGATTTCCATGATTTTTTAAAGAAAAAATAAATAAAGAAAAGCCGGGGGAATTTGAAATTTCAGGGAAAAAACAAGATAAATAATCGGATATTTATTGAATTTGATTTTTCAAAAAAAAAATTTTTTTTCGAGGCGAAAAAATCTTAAAAAAACAGATTTTTACTATTTGTTTGCACCCAGCTCCTCCTCCACTCCTCGAAAAAAATAGAGTTTAGAACTGAAATTTCTACTTTTAAATGCTGAAATATAAATTCTAAAAAAAGCGAAAAATGCAAACGCGCTTCACCTGCACTGGCGAGAGAGTGGAGGCGCCAGAGAAACGGGAGCGATGGCGAAATCGGATTTGCGCGGGAGCCATGTGTTTTTCAAATATTTCGGGGGGATTTTCAGCGATTTCCATGATTTTTTAAAGAAAAAATAAATAAAGAAAAGCCGGGGGAATTTGAAATTCCAGGGAAAAAACAAGATAAATAATCGGATATTTATTGAATTTGATTTTTCAAAAAAAAAAAATTTTTTTTCGAGGCGAAAAAATCTAAAAAAAACAGATTTTTACTATTTGTTTGCACCCAGCTCCTCCTCCACTCCAGCTGATAATGCACACC</canonical>
            <polymorphic>TTCTCGGCCATCTCCCTGCCTTTCTTCATCATATCTTCGACACTGACACATGCTCGACACGGCTTTCCATCTGGACCGATTTCCATTCTGAAATTCAAAAAAAATGATGCAAAAAGTCCGAAATAGACTGAAATTTGATGAAAAATAGGTTTTCCAAACCGAAAAATTGTTTGGAAATCGATAAAAATAGTGAGGAACTCGAAAAAAATAGAGTTTAGAACTGAAATTTCTACTTTTAAATGCTGAAATATAAATTCTAAAAAAAGCGAAAAATGCAAACGCGCTTCACCTGCACTGGCGAGAGAGTGGAGGCGCCAGAGAAACAGGAGCGATGGCGAAATCGGATTTGCGCGGGAGCCATGTGTTTTTCAAATTTTTTCGGGGGGATTTTCAGCGATTTCCATGATTTTTTAAAGAAAAAATAAATAAAGAAAAGCCGGGGGAATTTGAAATTTCAGGGAAAAAACAAGATAAATAATCGGATATTTATTGAATTTGAYTTTTCAAAAAAAAAATTTTTTTTCGAGGCGAAAAAATCTTAAAAAAACAGATTTTTACTATTTGTTTGCACCCAGCTCCTCCTCCACTCCTCGAAAAAAATAGAGTTTAGAACTGAAATTTCTACTTTTAAATGCTGAAATATAAATTCTAAAAAAAGCGAAAAATGCAAACGCGCTTCACCTGCACTGGCGAGAGAGTGGAGGCGCCAGAGAAACGGGAGCGATGGCGAAATCGGATTTGCGCGGGAGCCATGTGTTTTTCAAATATTTCGGGGGGATTTTCAGCGATTTCCATGATTTTTTAAAGAAAAAATAAATAAAGAAAAGCCGGGGGAATTTGAAATTCCAGGGAAAAAACAAGATAAATAATCGGATATTTATTGAATTTGATTTTTCAAAAAAAAAAAATTTTTTTTCGAGGCGAAAAAATCTAAAAAAAACAGATTTTTACTATTTGTTTGCACCCAGCTCCTCCTCCACTCCAGCTGATAATGCACACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCCATGTGTTTTTCAAAT</pcr_primer_p1>
		<pcr_primer_p2>GGTGCAAACAAATAGTAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>218</pcr_amplicon_size>
		<canonical_amplicon>GAGCCATGTGTTTTTCAAATTTTTTCGGGGGGATTTTCAGCGATTTCCATGATTTTTTAAAGAAAAAATAAATAAAGAAAAGCCGGGGGAATTTGAAATTTCAGGGAAAAAACAAGATAAATAATCGGATATTTATTGAATTTGATTTTTCAAAAAAAAAATTTTTTTTCGAGGCGAAAAAATCTTAAAAAAACAGATTTTTACTATTTGTTTGCACC</canonical_amplicon>
		<polymorphic_amplicon>GAGCCATGTGTTTTTCAAATTTTTTCGGGGGGATTTTCAGCGATTTCCATGATTTTTTAAAGAAAAAATAAATAAAGAAAAGCCGGGGGAATTTGAAATTTCAGGGAAAAAACAAGATAAATAATCGGATATTTATTGAATTTGAYTTTTCAAAAAAAAAATTTTTTTTCGAGGCGAAAAAATCTTAAAAAAACAGATTTTTACTATTTGTTTGCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33879</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>30057</contig_pos>
        <strand>+</strand>
        <context>TCTTAAAAAA[A/T]CAGATTTTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGATTTTTCAAAAAAAAAATTTTTTTTCGAGGCGAAAAAATCTTAAAAAA</left_flank>
        <right_flank>CAGATTTTTACTATTTGTTTGCACCCAGCTCCTCCTCCACTCCTCGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATGCTCGACACGGCTTTCCATCTGGACCGATTTCCATTCTGAAATTCAAAAAAAATGATGCAAAAAGTCCGAAATAGACTGAAATTTGATGAAAAATAGGTTTTCCAAACCGAAAAATTGTTTGGAAATCGATAAAAATAGTGAGGAACTCGAAAAAAATAGAGTTTAGAACTGAAATTTCTACTTTTAAATGCTGAAATATAAATTCTAAAAAAAGCGAAAAATGCAAACGCGCTTCACCTGCACTGGCGAGAGAGTGGAGGCGCCAGAGAAACAGGAGCGATGGCGAAATCGGATTTGCGCGGGAGCCATGTGTTTTTCAAATTTTTTCGGGGGGATTTTCAGCGATTTCCATGATTTTTTAAAGAAAAAATAAATAAAGAAAAGCCGGGGGAATTTGAAATTTCAGGGAAAAAACAAGATAAATAATCGGATATTTATTGAATTTGATTTTTCAAAAAAAAAATTTTTTTTCGAGGCGAAAAAATCTTAAAAAAACAGATTTTTACTATTTGTTTGCACCCAGCTCCTCCTCCACTCCTCGAAAAAAATAGAGTTTAGAACTGAAATTTCTACTTTTAAATGCTGAAATATAAATTCTAAAAAAAGCGAAAAATGCAAACGCGCTTCACCTGCACTGGCGAGAGAGTGGAGGCGCCAGAGAAACGGGAGCGATGGCGAAATCGGATTTGCGCGGGAGCCATGTGTTTTTCAAATATTTCGGGGGGATTTTCAGCGATTTCCATGATTTTTTAAAGAAAAAATAAATAAAGAAAAGCCGGGGGAATTTGAAATTCCAGGGAAAAAACAAGATAAATAATCGGATATTTATTGAATTTGATTTTTCAAAAAAAAAAAATTTTTTTTCGAGGCGAAAAAATCTAAAAAAAACAGATTTTTACTATTTGTTTGCACCCAGCTCCTCCTCCACTCCAGCTGATAATGCACACCTCTATCGTTTTTATCAATTTCCCGCAAATTTTTTTTTGCTTTTTTAG</canonical>
            <polymorphic>ACATGCTCGACACGGCTTTCCATCTGGACCGATTTCCATTCTGAAATTCAAAAAAAATGATGCAAAAAGTCCGAAATAGACTGAAATTTGATGAAAAATAGGTTTTCCAAACCGAAAAATTGTTTGGAAATCGATAAAAATAGTGAGGAACTCGAAAAAAATAGAGTTTAGAACTGAAATTTCTACTTTTAAATGCTGAAATATAAATTCTAAAAAAAGCGAAAAATGCAAACGCGCTTCACCTGCACTGGCGAGAGAGTGGAGGCGCCAGAGAAACAGGAGCGATGGCGAAATCGGATTTGCGCGGGAGCCATGTGTTTTTCAAATTTTTTCGGGGGGATTTTCAGCGATTTCCATGATTTTTTAAAGAAAAAATAAATAAAGAAAAGCCGGGGGAATTTGAAATTTCAGGGAAAAAACAAGATAAATAATCGGATATTTATTGAATTTGATTTTTCAAAAAAAAAATTTTTTTTCGAGGCGAAAAAATCTTAAAAAAWCAGATTTTTACTATTTGTTTGCACCCAGCTCCTCCTCCACTCCTCGAAAAAAATAGAGTTTAGAACTGAAATTTCTACTTTTAAATGCTGAAATATAAATTCTAAAAAAAGCGAAAAATGCAAACGCGCTTCACCTGCACTGGCGAGAGAGTGGAGGCGCCAGAGAAACGGGAGCGATGGCGAAATCGGATTTGCGCGGGAGCCATGTGTTTTTCAAATATTTCGGGGGGATTTTCAGCGATTTCCATGATTTTTTAAAGAAAAAATAAATAAAGAAAAGCCGGGGGAATTTGAAATTCCAGGGAAAAAACAAGATAAATAATCGGATATTTATTGAATTTGATTTTTCAAAAAAAAAAAATTTTTTTTCGAGGCGAAAAAATCTAAAAAAAACAGATTTTTACTATTTGTTTGCACCCAGCTCCTCCTCCACTCCAGCTGATAATGCACACCTCTATCGTTTTTATCAATTTCCCGCAAATTTTTTTTTGCTTTTTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCGGATATTTATTGAATTTGA</pcr_primer_p1>
		<pcr_primer_p2>CCGAAATATTTGAAAAACACAT</pcr_primer_p2>
		<pcr_amplicon_size>297</pcr_amplicon_size>
		<canonical_amplicon>AATCGGATATTTATTGAATTTGATTTTTCAAAAAAAAAATTTTTTTTCGAGGCGAAAAAATCTTAAAAAAACAGATTTTTACTATTTGTTTGCACCCAGCTCCTCCTCCACTCCTCGAAAAAAATAGAGTTTAGAACTGAAATTTCTACTTTTAAATGCTGAAATATAAATTCTAAAAAAAGCGAAAAATGCAAACGCGCTTCACCTGCACTGGCGAGAGAGTGGAGGCGCCAGAGAAACGGGAGCGATGGCGAAATCGGATTTGCGCGGGAGCCATGTGTTTTTCAAATATTTCGG</canonical_amplicon>
		<polymorphic_amplicon>AATCGGATATTTATTGAATTTGATTTTTCAAAAAAAAAATTTTTTTTCGAGGCGAAAAAATCTTAAAAAAWCAGATTTTTACTATTTGTTTGCACCCAGCTCCTCCTCCACTCCTCGAAAAAAATAGAGTTTAGAACTGAAATTTCTACTTTTAAATGCTGAAATATAAATTCTAAAAAAAGCGAAAAATGCAAACGCGCTTCACCTGCACTGGCGAGAGAGTGGAGGCGCCAGAGAAACGGGAGCGATGGCGAAATCGGATTTGCGCGGGAGCCATGTGTTTTTCAAATATTTCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33880</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>30121</contig_pos>
        <strand>+</strand>
        <context>TAGAGTTTAG[A/C]ACTGAAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTGTTTGCACCCAGCTCCTCCTCCACTCCTCGAAAAAAATAGAGTTTAG</left_flank>
        <right_flank>ACTGAAATTTCTACTTTTAAATGCTGAAATATAAATTCTAAAAAAAGCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGTCCGAAATAGACTGAAATTTGATGAAAAATAGGTTTTCCAAACCGAAAAATTGTTTGGAAATCGATAAAAATAGTGAGGAACTCGAAAAAAATAGAGTTTAGAACTGAAATTTCTACTTTTAAATGCTGAAATATAAATTCTAAAAAAAGCGAAAAATGCAAACGCGCTTCACCTGCACTGGCGAGAGAGTGGAGGCGCCAGAGAAACAGGAGCGATGGCGAAATCGGATTTGCGCGGGAGCCATGTGTTTTTCAAATTTTTTCGGGGGGATTTTCAGCGATTTCCATGATTTTTTAAAGAAAAAATAAATAAAGAAAAGCCGGGGGAATTTGAAATTTCAGGGAAAAAACAAGATAAATAATCGGATATTTATTGAATTTGATTTTTCAAAAAAAAAATTTTTTTTCGAGGCGAAAAAATCTTAAAAAAACAGATTTTTACTATTTGTTTGCACCCAGCTCCTCCTCCACTCCTCGAAAAAAATAGAGTTTAGAACTGAAATTTCTACTTTTAAATGCTGAAATATAAATTCTAAAAAAAGCGAAAAATGCAAACGCGCTTCACCTGCACTGGCGAGAGAGTGGAGGCGCCAGAGAAACGGGAGCGATGGCGAAATCGGATTTGCGCGGGAGCCATGTGTTTTTCAAATATTTCGGGGGGATTTTCAGCGATTTCCATGATTTTTTAAAGAAAAAATAAATAAAGAAAAGCCGGGGGAATTTGAAATTCCAGGGAAAAAACAAGATAAATAATCGGATATTTATTGAATTTGATTTTTCAAAAAAAAAAAATTTTTTTTCGAGGCGAAAAAATCTAAAAAAAACAGATTTTTACTATTTGTTTGCACCCAGCTCCTCCTCCACTCCAGCTGATAATGCACACCTCTATCGTTTTTATCAATTTCCCGCAAATTTTTTTTTGCTTTTTTAGAAATGCAAAAATGAGTCAAAAAGTGAGAGATTTGGCGAAAAAAATCGACGATATTCTCAATTTG</canonical>
            <polymorphic>AAAAGTCCGAAATAGACTGAAATTTGATGAAAAATAGGTTTTCCAAACCGAAAAATTGTTTGGAAATCGATAAAAATAGTGAGGAACTCGAAAAAAATAGAGTTTAGMACTGAAATTTCTACTTTTAAATGCTGAAATATAAATTCTAAAAAAAGCGAAAAATGCAAACGCGCTTCACCTGCACTGGCGAGAGAGTGGAGGCGCCAGAGAAACAGGAGCGATGGCGAAATCGGATTTGCGCGGGAGCCATGTGTTTTTCAAATTTTTTCGGGGGGATTTTCAGCGATTTCCATGATTTTTTAAAGAAAAAATAAATAAAGAAAAGCCGGGGGAATTTGAAATTTCAGGGAAAAAACAAGATAAATAATCGGATATTTATTGAATTTGATTTTTCAAAAAAAAAATTTTTTTTCGAGGCGAAAAAATCTTAAAAAAACAGATTTTTACTATTTGTTTGCACCCAGCTCCTCCTCCACTCCTCGAAAAAAATAGAGTTTAGAACTGAAATTTCTACTTTTAAATGCTGAAATATAAATTCTAAAAAAAGCGAAAAATGCAAACGCGCTTCACCTGCACTGGCGAGAGAGTGGAGGCGCCAGAGAAACGGGAGCGATGGCGAAATCGGATTTGCGCGGGAGCCATGTGTTTTTCAAATATTTCGGGGGGATTTTCAGCGATTTCCATGATTTTTTAAAGAAAAAATAAATAAAGAAAAGCCGGGGGAATTTGAAATTCCAGGGAAAAAACAAGATAAATAATCGGATATTTATTGAATTTGATTTTTCAAAAAAAAAAAATTTTTTTTCGAGGCGAAAAAATCTAAAAAAAACAGATTTTTACTATTTGTTTGCACCCAGCTCCTCCTCCACTCCAGCTGATAATGCACACCTCTATCGTTTTTATCAATTTCCCGCAAATTTTTTTTTGCTTTTTTAGAAATGCAAAAATGAGTCAAAAAGTGAGAGATTTGGCGAAAAAAATCGACGATATTCTCAATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCGGATATTTATTGAATTTGA</pcr_primer_p1>
		<pcr_primer_p2>CCGAAATATTTGAAAAACACAT</pcr_primer_p2>
		<pcr_amplicon_size>297</pcr_amplicon_size>
		<canonical_amplicon>AATCGGATATTTATTGAATTTGATTTTTCAAAAAAAAAATTTTTTTTCGAGGCGAAAAAATCTTAAAAAAACAGATTTTTACTATTTGTTTGCACCCAGCTCCTCCTCCACTCCTCGAAAAAAATAGAGTTTAGAACTGAAATTTCTACTTTTAAATGCTGAAATATAAATTCTAAAAAAAGCGAAAAATGCAAACGCGCTTCACCTGCACTGGCGAGAGAGTGGAGGCGCCAGAGAAACGGGAGCGATGGCGAAATCGGATTTGCGCGGGAGCCATGTGTTTTTCAAATATTTCGG</canonical_amplicon>
		<polymorphic_amplicon>AATCGGATATTTATTGAATTTGATTTTTCAAAAAAAAAATTTTTTTTCGAGGCGAAAAAATCTTAAAAAAACAGATTTTTACTATTTGTTTGCACCCAGCTCCTCCTCCACTCCTCGAAAAAAATAGAGTTTAGAACTGAAATTTCTACTTTTAAATGCTGAAATATAAATTCTAAAAAAAGCGAAAAATGCAAACGCGCTTCACCTGCACTGGCGAGAGAGTGGAGGCGCCAGAGAAACGGGAGCGATGGCGAAATCGGATTTGCGCGGGAGCCATGTGTTTTTCAAATATTTCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33881</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>32292</contig_pos>
        <strand></strand>
        <context>agcttgaaat[G/T]gttttaaata</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAATGAGCTGAAAATAGGCTTAAAATAGGCTAAGAATAAGCTTGAAAT</left_flank>
        <right_flank>GTTTTAAATAGGATAAAATAGCTAAAAATTGGTCAAAATTTAGGATGGAA</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTACGACTTCATTTTATCAGCTGATGGTCTAGAAGGTGACGTCTCCAACGTATTGCACATCTGTGCGATGGCATCTCGAATTCAGTGGGCCGACCATTCGCATCTTCAGAAGTTATGGGATTTCATTTGGCGTCGAATCGAAACGGCGGATTTAAAGGAGCAGGCGCTTCGAAGCTATTGCGAGGTGGCGGTGGAAATGATGAAAAATGTGGATTACGAGATCTATGAGACATCGAGCCATCAACTGGTTCGGAGGGCGATCAGAGCGCTGAAAATGGGAAATCATGGAATTAGCCAAGCAGCGTGAGTATTTGCTCTGAAAATTGCTGAAAATCGGTTGAAAATAGGTCAAAAATGCCCTAAAATTGACTAAAAATTGCTTAAAATAGGCAGAAACAACATAGGCAGAAAATTGCTTGAAATTGGCTGAAATCGCATTAAATAGGTAAAAATGAGCTGAAAATAGGCTTAAAATAGGCTAAGAATAAGCTTGAAATGGTTTTAAATAGGATAAAATAGCTAAAAATTGGTCAAAATTTAGGATGGAATTCAGACAACGGTCCAAAATGTGGTGAAAATTGACTGAAAACGACCGAAAACAAGGCAAAAAATTGATAGGTTTATTTGGCTGAAAACGACTCGAAATAGACTTAAAATTATCAAAATTCACTGAAAATCATCAAAAATAGGTTTGGAACAGGTCAAAATAGCTAAAATAGGATTTAAAAAATGGCTATAGATAGGTCAAAATGGTTCAAATAAGTCGAAATGGCTTATCATGGGCTCCAAATGTGCTTAAAATAGGCTTGAAAAGGGTCTAAAATGACTGAAAATATGATAAAAATAGATCAAAAGTGGCTGAAAATAGGCCAAAACAGGCTAGAATAGGCTATCACACAGAAAAAATGAGGGGACGGACACCAGAAAAAACAGGATTTTTCAAAAAATGGACGCTGAGCAATCTGGCACCATTTGGAGCATAAAAGAAGGTTGAGATA</canonical>
            <polymorphic>TCCTACGACTTCATTTTATCAGCTGATGGTCTAGAAGGTGACGTCTCCAACGTATTGCACATCTGTGCGATGGCATCTCGAATTCAGTGGGCCGACCATTCGCATCTTCAGAAGTTATGGGATTTCATTTGGCGTCGAATCGAAACGGCGGATTTAAAGGAGCAGGCGCTTCGAAGCTATTGCGAGGTGGCGGTGGAAATGATGAAAAATGTGGATTACGAGATCTATGAGACATCGAGCCATCAACTGGTTCGGAGGGCGATCAGAGCGCTGAAAATGGGAAATCATGGAATTAGCCAAGCAGCGTGAGTATTTGCTCTGAAAATTGCTGAAAATCGGTTGAAAATAGGTCAAAAATGCCCTAAAATTGACTAAAAATTGCTTAAAATAGGCAGAAACAACATAGGCAGAAAATTGCTTGAAATTGGCTGAAATCGCATTAAATAGGTAAAAATGAGCTGAAAATAGGCTTAAAATAGGCTAAGAATAAGCTTGAAATKGTTTTAAATAGGATAAAATAGCTAAAAATTGGTCAAAATTTAGGATGGAATTCAGACAACGGTCCAAAATGTGGTGAAAATTGACTGAAAACGACCGAAAACAAGGCAAAAAATTGATAGGTTTATTTGGCTGAAAACGACTCGAAATAGACTTAAAATTATCAAAATTCACTGAAAATCATCAAAAATAGGTTTGGAACAGGTCAAAATAGCTAAAATAGGATTTAAAAAATGGCTATAGATAGGTCAAAATGGTTCAAATAAGTCGAAATGGCTTATCATGGGCTCCAAATGTGCTTAAAATAGGCTTGAAAAGGGTCTAAAATGACTGAAAATATGATAAAAATAGATCAAAAGTGGCTGAAAATAGGCCAAAACAGGCTAGAATAGGCTATCACACAGAAAAAATGAGGGGACGGACACCAGAAAAAACAGGATTTTTCAAAAAATGGACGCTGAGCAATCTGGCACCATTTGGAGCATAAAAGAAGGTTGAGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGATTACGAGATCTATGAGAC</pcr_primer_p1>
		<pcr_primer_p2>TCTTTTATGCTCCAAATGGT</pcr_primer_p2>
		<pcr_amplicon_size>779</pcr_amplicon_size>
		<canonical_amplicon>GTGGATTACGAGATCTATGAGACATCGAGCCATCAACTGGTTCGGAGGGCGATCAGAGCGCTGAAAATGGGAAATCATGGAATTAGCCAAGCAGCGTGAGTATTTGCTCTGAAAATTGCTGAAAATCGGTTGAAAATAGGTCAAAAATGCCCTAAAATTGACTAAAAATTGCTTAAAATAGGCAGAAACAACATAGGCAGAAAATTGCTTGAAATTGGCTGAAATCGCATTAAATAGGTAAAAATGAGCTGAAAATAGGCTTAAAATAGGCTAAGAATAAGCTTGAAATGGTTTTAAATAGGATAAAATAGCTAAAAATTGGTCAAAATTTAGGATGGAATTCAGACAACGGTCCAAAATGTGGTGAAAATTGACTGAAAACGACCGAAAACAAGGCAAAAAATTGATAGGTTTATTTGGCTGAAAACGACTCGAAATAGACTTAAAATTATCAAAATTCACTGAAAATCATCAAAAATAGGTTTGGAACAGGTCAAAATAGCTAAAATAGGATTTAAAAAATGGCTATAGATAGGTCAAAATGGTTCAAATAAGTCGAAATGGCTTATCATGGGCTCCAAATGTGCTTAAAATAGGCTTGAAAAGGGTCTAAAATGACTGAAAATATGATAAAAATAGATCAAAAGTGGCTGAAAATAGGCCAAAACAGGCTAGAATAGGCTATCACACAGAAAAAATGAGGGGACGGACACCAGAAAAAACAGGATTTTTCAAAAAATGGACGCTGAGCAATCTGGCACCATTTGGAGCATAAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GTGGATTACGAGATCTATGAGACATCGAGCCATCAACTGGTTCGGAGGGCGATCAGAGCGCTGAAAATGGGAAATCATGGAATTAGCCAAGCAGCGTGAGTATTTGCTCTGAAAATTGCTGAAAATCGGTTGAAAATAGGTCAAAAATGCCCTAAAATTGACTAAAAATTGCTTAAAATAGGCAGAAACAACATAGGCAGAAAATTGCTTGAAATTGGCTGAAATCGCATTAAATAGGTAAAAATGAGCTGAAAATAGGCTTAAAATAGGCTAAGAATAAGCTTGAAATKGTTTTAAATAGGATAAAATAGCTAAAAATTGGTCAAAATTTAGGATGGAATTCAGACAACGGTCCAAAATGTGGTGAAAATTGACTGAAAACGACCGAAAACAAGGCAAAAAATTGATAGGTTTATTTGGCTGAAAACGACTCGAAATAGACTTAAAATTATCAAAATTCACTGAAAATCATCAAAAATAGGTTTGGAACAGGTCAAAATAGCTAAAATAGGATTTAAAAAATGGCTATAGATAGGTCAAAATGGTTCAAATAAGTCGAAATGGCTTATCATGGGCTCCAAATGTGCTTAAAATAGGCTTGAAAAGGGTCTAAAATGACTGAAAATATGATAAAAATAGATCAAAAGTGGCTGAAAATAGGCCAAAACAGGCTAGAATAGGCTATCACACAGAAAAAATGAGGGGACGGACACCAGAAAAAACAGGATTTTTCAAAAAATGGACGCTGAGCAATCTGGCACCATTTGGAGCATAAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33882</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>32491</contig_pos>
        <strand></strand>
        <context>taggtttgga[A/G]caggtcaaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGACTTAAAATTATCAAAATTCACTGAAAATCATCAAAAATAGGTTTGGA</left_flank>
        <right_flank>CAGGTCAAAATAGCTAAAATAGGATTTAAAAAATGGCTATAGATAGGTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATGAAAAATGTGGATTACGAGATCTATGAGACATCGAGCCATCAACTGGTTCGGAGGGCGATCAGAGCGCTGAAAATGGGAAATCATGGAATTAGCCAAGCAGCGTGAGTATTTGCTCTGAAAATTGCTGAAAATCGGTTGAAAATAGGTCAAAAATGCCCTAAAATTGACTAAAAATTGCTTAAAATAGGCAGAAACAACATAGGCAGAAAATTGCTTGAAATTGGCTGAAATCGCATTAAATAGGTAAAAATGAGCTGAAAATAGGCTTAAAATAGGCTAAGAATAAGCTTGAAATGGTTTTAAATAGGATAAAATAGCTAAAAATTGGTCAAAATTTAGGATGGAATTCAGACAACGGTCCAAAATGTGGTGAAAATTGACTGAAAACGACCGAAAACAAGGCAAAAAATTGATAGGTTTATTTGGCTGAAAACGACTCGAAATAGACTTAAAATTATCAAAATTCACTGAAAATCATCAAAAATAGGTTTGGAACAGGTCAAAATAGCTAAAATAGGATTTAAAAAATGGCTATAGATAGGTCAAAATGGTTCAAATAAGTCGAAATGGCTTATCATGGGCTCCAAATGTGCTTAAAATAGGCTTGAAAAGGGTCTAAAATGACTGAAAATATGATAAAAATAGATCAAAAGTGGCTGAAAATAGGCCAAAACAGGCTAGAATAGGCTATCACACAGAAAAAATGAGGGGACGGACACCAGAAAAAACAGGATTTTTCAAAAAATGGACGCTGAGCAATCTGGCACCATTTGGAGCATAAAAGAAGGTTGAGATAGCAATTACACATCATTTGCAAGACACGTGGCACATCGAAAATCACTGGAATAGTTCAAGTGCGCTCCAGCGGCACACTTAAAATGCACCCATCCGGAGCATCCGAAGCATTGGCACGTTCCGGAACGAGCGGGCTTTTGACAGACAGGGCATTGATGTTTGGATGGCTTCTTTTTAGGTTGTTGGCGGACAGAAGATGG</canonical>
            <polymorphic>TGATGAAAAATGTGGATTACGAGATCTATGAGACATCGAGCCATCAACTGGTTCGGAGGGCGATCAGAGCGCTGAAAATGGGAAATCATGGAATTAGCCAAGCAGCGTGAGTATTTGCTCTGAAAATTGCTGAAAATCGGTTGAAAATAGGTCAAAAATGCCCTAAAATTGACTAAAAATTGCTTAAAATAGGCAGAAACAACATAGGCAGAAAATTGCTTGAAATTGGCTGAAATCGCATTAAATAGGTAAAAATGAGCTGAAAATAGGCTTAAAATAGGCTAAGAATAAGCTTGAAATGGTTTTAAATAGGATAAAATAGCTAAAAATTGGTCAAAATTTAGGATGGAATTCAGACAACGGTCCAAAATGTGGTGAAAATTGACTGAAAACGACCGAAAACAAGGCAAAAAATTGATAGGTTTATTTGGCTGAAAACGACTCGAAATAGACTTAAAATTATCAAAATTCACTGAAAATCATCAAAAATAGGTTTGGARCAGGTCAAAATAGCTAAAATAGGATTTAAAAAATGGCTATAGATAGGTCAAAATGGTTCAAATAAGTCGAAATGGCTTATCATGGGCTCCAAATGTGCTTAAAATAGGCTTGAAAAGGGTCTAAAATGACTGAAAATATGATAAAAATAGATCAAAAGTGGCTGAAAATAGGCCAAAACAGGCTAGAATAGGCTATCACACAGAAAAAATGAGGGGACGGACACCAGAAAAAACAGGATTTTTCAAAAAATGGACGCTGAGCAATCTGGCACCATTTGGAGCATAAAAGAAGGTTGAGATAGCAATTACACATCATTTGCAAGACACGTGGCACATCGAAAATCACTGGAATAGTTCAAGTGCGCTCCAGCGGCACACTTAAAATGCACCCATCCGGAGCATCCGAAGCATTGGCACGTTCCGGAACGAGCGGGCTTTTGACAGACAGGGCATTGATGTTTGGATGGCTTCTTTTTAGGTTGTTGGCGGACAGAAGATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGATTACGAGATCTATGAGAC</pcr_primer_p1>
		<pcr_primer_p2>TCTTTTATGCTCCAAATGGT</pcr_primer_p2>
		<pcr_amplicon_size>779</pcr_amplicon_size>
		<canonical_amplicon>GTGGATTACGAGATCTATGAGACATCGAGCCATCAACTGGTTCGGAGGGCGATCAGAGCGCTGAAAATGGGAAATCATGGAATTAGCCAAGCAGCGTGAGTATTTGCTCTGAAAATTGCTGAAAATCGGTTGAAAATAGGTCAAAAATGCCCTAAAATTGACTAAAAATTGCTTAAAATAGGCAGAAACAACATAGGCAGAAAATTGCTTGAAATTGGCTGAAATCGCATTAAATAGGTAAAAATGAGCTGAAAATAGGCTTAAAATAGGCTAAGAATAAGCTTGAAATGGTTTTAAATAGGATAAAATAGCTAAAAATTGGTCAAAATTTAGGATGGAATTCAGACAACGGTCCAAAATGTGGTGAAAATTGACTGAAAACGACCGAAAACAAGGCAAAAAATTGATAGGTTTATTTGGCTGAAAACGACTCGAAATAGACTTAAAATTATCAAAATTCACTGAAAATCATCAAAAATAGGTTTGGAACAGGTCAAAATAGCTAAAATAGGATTTAAAAAATGGCTATAGATAGGTCAAAATGGTTCAAATAAGTCGAAATGGCTTATCATGGGCTCCAAATGTGCTTAAAATAGGCTTGAAAAGGGTCTAAAATGACTGAAAATATGATAAAAATAGATCAAAAGTGGCTGAAAATAGGCCAAAACAGGCTAGAATAGGCTATCACACAGAAAAAATGAGGGGACGGACACCAGAAAAAACAGGATTTTTCAAAAAATGGACGCTGAGCAATCTGGCACCATTTGGAGCATAAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GTGGATTACGAGATCTATGAGACATCGAGCCATCAACTGGTTCGGAGGGCGATCAGAGCGCTGAAAATGGGAAATCATGGAATTAGCCAAGCAGCGTGAGTATTTGCTCTGAAAATTGCTGAAAATCGGTTGAAAATAGGTCAAAAATGCCCTAAAATTGACTAAAAATTGCTTAAAATAGGCAGAAACAACATAGGCAGAAAATTGCTTGAAATTGGCTGAAATCGCATTAAATAGGTAAAAATGAGCTGAAAATAGGCTTAAAATAGGCTAAGAATAAGCTTGAAATGGTTTTAAATAGGATAAAATAGCTAAAAATTGGTCAAAATTTAGGATGGAATTCAGACAACGGTCCAAAATGTGGTGAAAATTGACTGAAAACGACCGAAAACAAGGCAAAAAATTGATAGGTTTATTTGGCTGAAAACGACTCGAAATAGACTTAAAATTATCAAAATTCACTGAAAATCATCAAAAATAGGTTTGGARCAGGTCAAAATAGCTAAAATAGGATTTAAAAAATGGCTATAGATAGGTCAAAATGGTTCAAATAAGTCGAAATGGCTTATCATGGGCTCCAAATGTGCTTAAAATAGGCTTGAAAAGGGTCTAAAATGACTGAAAATATGATAAAAATAGATCAAAAGTGGCTGAAAATAGGCCAAAACAGGCTAGAATAGGCTATCACACAGAAAAAATGAGGGGACGGACACCAGAAAAAACAGGATTTTTCAAAAAATGGACGCTGAGCAATCTGGCACCATTTGGAGCATAAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33883</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>32513</contig_pos>
        <strand></strand>
        <context>agctaaaata[G/T]gatttaaaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTGAAAATCATCAAAAATAGGTTTGGAACAGGTCAAAATAGCTAAAATA</left_flank>
        <right_flank>GATTTAAAAAATGGCTATAGATAGGTCAAAATGGTTCAAATAAGTCGAAA</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCTATGAGACATCGAGCCATCAACTGGTTCGGAGGGCGATCAGAGCGCTGAAAATGGGAAATCATGGAATTAGCCAAGCAGCGTGAGTATTTGCTCTGAAAATTGCTGAAAATCGGTTGAAAATAGGTCAAAAATGCCCTAAAATTGACTAAAAATTGCTTAAAATAGGCAGAAACAACATAGGCAGAAAATTGCTTGAAATTGGCTGAAATCGCATTAAATAGGTAAAAATGAGCTGAAAATAGGCTTAAAATAGGCTAAGAATAAGCTTGAAATGGTTTTAAATAGGATAAAATAGCTAAAAATTGGTCAAAATTTAGGATGGAATTCAGACAACGGTCCAAAATGTGGTGAAAATTGACTGAAAACGACCGAAAACAAGGCAAAAAATTGATAGGTTTATTTGGCTGAAAACGACTCGAAATAGACTTAAAATTATCAAAATTCACTGAAAATCATCAAAAATAGGTTTGGAACAGGTCAAAATAGCTAAAATAGGATTTAAAAAATGGCTATAGATAGGTCAAAATGGTTCAAATAAGTCGAAATGGCTTATCATGGGCTCCAAATGTGCTTAAAATAGGCTTGAAAAGGGTCTAAAATGACTGAAAATATGATAAAAATAGATCAAAAGTGGCTGAAAATAGGCCAAAACAGGCTAGAATAGGCTATCACACAGAAAAAATGAGGGGACGGACACCAGAAAAAACAGGATTTTTCAAAAAATGGACGCTGAGCAATCTGGCACCATTTGGAGCATAAAAGAAGGTTGAGATAGCAATTACACATCATTTGCAAGACACGTGGCACATCGAAAATCACTGGAATAGTTCAAGTGCGCTCCAGCGGCACACTTAAAATGCACCCATCCGGAGCATCCGAAGCATTGGCACGTTCCGGAACGAGCGGGCTTTTGACAGACAGGGCATTGATGTTTGGATGGCTTCTTTTTAGGTTGTTGGCGGACAGAAGATGGGCATGCAAGGGAAAGTGGAGGC</canonical>
            <polymorphic>GATCTATGAGACATCGAGCCATCAACTGGTTCGGAGGGCGATCAGAGCGCTGAAAATGGGAAATCATGGAATTAGCCAAGCAGCGTGAGTATTTGCTCTGAAAATTGCTGAAAATCGGTTGAAAATAGGTCAAAAATGCCCTAAAATTGACTAAAAATTGCTTAAAATAGGCAGAAACAACATAGGCAGAAAATTGCTTGAAATTGGCTGAAATCGCATTAAATAGGTAAAAATGAGCTGAAAATAGGCTTAAAATAGGCTAAGAATAAGCTTGAAATGGTTTTAAATAGGATAAAATAGCTAAAAATTGGTCAAAATTTAGGATGGAATTCAGACAACGGTCCAAAATGTGGTGAAAATTGACTGAAAACGACCGAAAACAAGGCAAAAAATTGATAGGTTTATTTGGCTGAAAACGACTCGAAATAGACTTAAAATTATCAAAATTCACTGAAAATCATCAAAAATAGGTTTGGAACAGGTCAAAATAGCTAAAATAKGATTTAAAAAATGGCTATAGATAGGTCAAAATGGTTCAAATAAGTCGAAATGGCTTATCATGGGCTCCAAATGTGCTTAAAATAGGCTTGAAAAGGGTCTAAAATGACTGAAAATATGATAAAAATAGATCAAAAGTGGCTGAAAATAGGCCAAAACAGGCTAGAATAGGCTATCACACAGAAAAAATGAGGGGACGGACACCAGAAAAAACAGGATTTTTCAAAAAATGGACGCTGAGCAATCTGGCACCATTTGGAGCATAAAAGAAGGTTGAGATAGCAATTACACATCATTTGCAAGACACGTGGCACATCGAAAATCACTGGAATAGTTCAAGTGCGCTCCAGCGGCACACTTAAAATGCACCCATCCGGAGCATCCGAAGCATTGGCACGTTCCGGAACGAGCGGGCTTTTGACAGACAGGGCATTGATGTTTGGATGGCTTCTTTTTAGGTTGTTGGCGGACAGAAGATGGGCATGCAAGGGAAAGTGGAGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGATTACGAGATCTATGAGAC</pcr_primer_p1>
		<pcr_primer_p2>TCTTTTATGCTCCAAATGGT</pcr_primer_p2>
		<pcr_amplicon_size>779</pcr_amplicon_size>
		<canonical_amplicon>AGGATTTAAAAAATGGCTATAGATAGGTCAAAATGGTTCAAATAAGTCGAAATGGCTTATCATGGGCTCCAAATGTGCTTAAAATAGGCTTGAAAAGGGTCTAAAATGACTGAAAATATGATAAAAATAGATCAAAAGTGGCTGAAAATAGGCCAAAACAGGCTAGAATAGGCTATCACACAGAAAAAATGAGGGGACGGACACCAGAAAAAACAGGATTTTTCAAAAAATGGACGCTGAGCAATCTGGCACCATTTGGAGCATAAAAGA</canonical_amplicon>
		<polymorphic_amplicon>AKGATTTAAAAAATGGCTATAGATAGGTCAAAATGGTTCAAATAAGTCGAAATGGCTTATCATGGGCTCCAAATGTGCTTAAAATAGGCTTGAAAAGGGTCTAAAATGACTGAAAATATGATAAAAATAGATCAAAAGTGGCTGAAAATAGGCCAAAACAGGCTAGAATAGGCTATCACACAGAAAAAATGAGGGGACGGACACCAGAAAAAACAGGATTTTTCAAAAAATGGACGCTGAGCAATCTGGCACCATTTGGAGCATAAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33884</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>68821</contig_pos>
        <strand>+</strand>
        <context>AGAACTTGAG[A/G]CAGAGAGAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCGGTGGAAGAGAGAGGGCCGAGAAGTGACATTATGCACAGAACTTGAG</left_flank>
        <right_flank>CAGAGAGAGGGGAGAGACGCAGAGAAACGAATTTGAATAGAACTGTACAG</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGAAAAATAGAAAGGCCCTTTGTAATAGAAGGGCCCCCTGTAATAGAAGGGTCCTCCGGAGGTACCTTGGAACAATAGAAGGGCCGTCCCTTCTAATACAGGTTTTACGGTAATAGAACGTTTAGAAAATCGACTACTTGTTGAAAGCGGTACTGTACTAAAAATTGGTCCAAAAACACCTTCCAAATCAGGAATTTTGGAAAAACTGACTACTAGCCAAAAGAGGTATACTGTACCTTAGTAGACTGGCAAAATTTCAAAAGCAATCCCATAAAAATTCGAAAAATCCGCTCATGCTCGGGTAGGAAAAGGTGGCAAACTGTCTCTTCAGCCGAGTCAAAACAAAAGGCGTGCGCGCAAAAGTTGTTGCGTTGTTTCTCTGTGCTTGTATATGCTTATTATTTACACATTTTGCTGACTGCACATACACCTCTTGAAACGGATTATCCGGTGGAAGAGAGAGGGCCGAGAAGTGACATTATGCACAGAACTTGAGGCAGAGAGAGGGGAGAGACGCAGAGAAACGAATTTGAATAGAACTGTACAGTACTGTGCTTGAAAATTATTTTTCAAAAAGATAATCTGACTTTATAAAATTCATAGTTCATGTTTAGAAATGAGGCAAATTAGAAGGATTAGAGGTAGACACATGGAACTAGACACATAAGCCGCTGGCCAATTTCGACCCCATGATAAATAGCGTAATATCTTTCCGATTTGCCAGAAAACTTCAGAGTATACTAAACAAATCAAGAGCTTCATTTTTGTAGTTGACAACATTTTTGTGAAATCTTATCTAGAAAAGATGCGCCAGATTGAAGTGGAAAGGTTCGCACAAAATTCAGGCTGGTCAAGTCGTGCCCATCACTCTCTGGTGTATAACTCAGCTCAAAATTGGAATTTTTGTGCAGAACAAAAAGTAAAATGTAGAGCTTAACAAGATCTACAAAATAATATTAAATACAACAATGCACTAACTACGAAAATCTGGATAAAC</canonical>
            <polymorphic>TTTGGAAAAATAGAAAGGCCCTTTGTAATAGAAGGGCCCCCTGTAATAGAAGGGTCCTCCGGAGGTACCTTGGAACAATAGAAGGGCCGTCCCTTCTAATACAGGTTTTACGGTAATAGAACGTTTAGAAAATCGACTACTTGTTGAAAGCGGTACTGTACTAAAAATTGGTCCAAAAACACCTTCCAAATCAGGAATTTTGGAAAAACTGACTACTAGCCAAAAGAGGTATACTGTACCTTAGTAGACTGGCAAAATTTCAAAAGCAATCCCATAAAAATTCGAAAAATCCGCTCATGCTCGGGTAGGAAAAGGTGGCAAACTGTCTCTTCAGCCGAGTCAAAACAAAAGGCGTGCGCGCAAAAGTTGTTGCGTTGTTTCTCTGTGCTTGTATATGCTTATTATTTACACATTTTGCTGACTGCACATACACCTCTTGAAACGGATTATCCGGTGGAAGAGAGAGGGCCGAGAAGTGACATTATGCACAGAACTTGAGRCAGAGAGAGGGGAGAGACGCAGAGAAACGAATTTGAATAGAACTGTACAGTACTGTGCTTGAAAATTATTTTTCAAAAAGATAATCTGACTTTATAAAATTCATAGTTCATGTTTAGAAATGAGGCAAATTAGAAGGATTAGAGGTAGACACATGGAACTAGACACATAAGCCGCTGGCCAATTTCGACCCCATGATAAATAGCGTAATATCTTTCCGATTTGCCAGAAAACTTCAGAGTATACTAAACAAATCAAGAGCTTCATTTTTGTAGTTGACAACATTTTTGTGAAATCTTATCTAGAAAAGATGCGCCAGATTGAAGTGGAAAGGTTCGCACAAAATTCAGGCTGGTCAAGTCGTGCCCATCACTCTCTGGTGTATAACTCAGCTCAAAATTGGAATTTTTGTGCAGAACAAAAAGTAAAATGTAGAGCTTAACAAGATCTACAAAATAATATTAAATACAACAATGCACTAACTACGAAAATCTGGATAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTTTCTCTGTGCTTGTATATG</pcr_primer_p1>
		<pcr_primer_p2>GCCTCATTTCTAAACATGAACTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTGTTTCTCTGTGCTTGTATATGCTTATTATTTACACATTTTGCTGACTGCACATACACCTCTTGAAACGGATTATCCGGTGGAAGAGAGAGGGCCGAGAAGTGACATTATGCACAGAACTTGAGGCAGAGAGAGGGGAGAGACGCAGAGAAACGAATTTGAATAGAACTGTACAGTACTGTGCTTGAAAATTATTTTTCAAAAAGATAATCTGACTTTATAAAATTCATAGTTCATGTTTAGAAATGAGGC</canonical_amplicon>
		<polymorphic_amplicon>TTGTTTCTCTGTGCTTGTATATGCTTATTATTTACACATTTTGCTGACTGCACATACACCTCTTGAAACGGATTATCCGGTGGAAGAGAGAGGGCCGAGAAGTGACATTATGCACAGAACTTGAGRCAGAGAGAGGGGAGAGACGCAGAGAAACGAATTTGAATAGAACTGTACAGTACTGTGCTTGAAAATTATTTTTCAAAAAGATAATCTGACTTTATAAAATTCATAGTTCATGTTTAGAAATGAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33885</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>69057</contig_pos>
        <strand></strand>
        <context>agaaaacttc[A/G]gagtatacta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGACCCCATGATAAATAGCGTAATATCTTTCCGATTTGCCAGAAAACTTC</left_flank>
        <right_flank>GAGTATACTAAACAAATCAAGAGCTTCATTTTTGTAGTTGACAACATTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACCTTAGTAGACTGGCAAAATTTCAAAAGCAATCCCATAAAAATTCGAAAAATCCGCTCATGCTCGGGTAGGAAAAGGTGGCAAACTGTCTCTTCAGCCGAGTCAAAACAAAAGGCGTGCGCGCAAAAGTTGTTGCGTTGTTTCTCTGTGCTTGTATATGCTTATTATTTACACATTTTGCTGACTGCACATACACCTCTTGAAACGGATTATCCGGTGGAAGAGAGAGGGCCGAGAAGTGACATTATGCACAGAACTTGAGGCAGAGAGAGGGGAGAGACGCAGAGAAACGAATTTGAATAGAACTGTACAGTACTGTGCTTGAAAATTATTTTTCAAAAAGATAATCTGACTTTATAAAATTCATAGTTCATGTTTAGAAATGAGGCAAATTAGAAGGATTAGAGGTAGACACATGGAACTAGACACATAAGCCGCTGGCCAATTTCGACCCCATGATAAATAGCGTAATATCTTTCCGATTTGCCAGAAAACTTCAGAGTATACTAAACAAATCAAGAGCTTCATTTTTGTAGTTGACAACATTTTTGTGAAATCTTATCTAGAAAAGATGCGCCAGATTGAAGTGGAAAGGTTCGCACAAAATTCAGGCTGGTCAAGTCGTGCCCATCACTCTCTGGTGTATAACTCAGCTCAAAATTGGAATTTTTGTGCAGAACAAAAAGTAAAATGTAGAGCTTAACAAGATCTACAAAATAATATTAAATACAACAATGCACTAACTACGAAAATCTGGATAAACAGACAAACAGGGCTGGAAGCTTAAATCATTGACATTTCGATATACCAAACTCTACTCTTTCGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGTGAAGAGGCACAGAGGAAACTGATTTCAATTTTCGAATAAAAGGAACTGTATAGAAATAATGAACAAGTGGTGATAAAAGTTAAAG</canonical>
            <polymorphic>TACCTTAGTAGACTGGCAAAATTTCAAAAGCAATCCCATAAAAATTCGAAAAATCCGCTCATGCTCGGGTAGGAAAAGGTGGCAAACTGTCTCTTCAGCCGAGTCAAAACAAAAGGCGTGCGCGCAAAAGTTGTTGCGTTGTTTCTCTGTGCTTGTATATGCTTATTATTTACACATTTTGCTGACTGCACATACACCTCTTGAAACGGATTATCCGGTGGAAGAGAGAGGGCCGAGAAGTGACATTATGCACAGAACTTGAGGCAGAGAGAGGGGAGAGACGCAGAGAAACGAATTTGAATAGAACTGTACAGTACTGTGCTTGAAAATTATTTTTCAAAAAGATAATCTGACTTTATAAAATTCATAGTTCATGTTTAGAAATGAGGCAAATTAGAAGGATTAGAGGTAGACACATGGAACTAGACACATAAGCCGCTGGCCAATTTCGACCCCATGATAAATAGCGTAATATCTTTCCGATTTGCCAGAAAACTTCRGAGTATACTAAACAAATCAAGAGCTTCATTTTTGTAGTTGACAACATTTTTGTGAAATCTTATCTAGAAAAGATGCGCCAGATTGAAGTGGAAAGGTTCGCACAAAATTCAGGCTGGTCAAGTCGTGCCCATCACTCTCTGGTGTATAACTCAGCTCAAAATTGGAATTTTTGTGCAGAACAAAAAGTAAAATGTAGAGCTTAACAAGATCTACAAAATAATATTAAATACAACAATGCACTAACTACGAAAATCTGGATAAACAGACAAACAGGGCTGGAAGCTTAAATCATTGACATTTCGATATACCAAACTCTACTCTTTCGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGTGAAGAGGCACAGAGGAAACTGATTTCAATTTTCGAATAAAAGGAACTGTATAGAAATAATGAACAAGTGGTGATAAAAGTTAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACACATGGAACTAGACACATAAG</pcr_primer_p1>
		<pcr_primer_p2>TCCAGATTTTCGTAGTTAGTGC</pcr_primer_p2>
		<pcr_amplicon_size>348</pcr_amplicon_size>
		<canonical_amplicon>GACACATGGAACTAGACACATAAGCCGCTGGCCAATTTCGACCCCATGATAAATAGCGTAATATCTTTCCGATTTGCCAGAAAACTTCAGAGTATACTAAACAAATCAAGAGCTTCATTTTTGTAGTTGACAACATTTTTGTGAAATCTTATCTAGAAAAGATGCGCCAGATTGAAGTGGAAAGGTTCGCACAAAATTCAGGCTGGTCAAGTCGTGCCCATCACTCTCTGGTGTATAACTCAGCTCAAAATTGGAATTTTTGTGCAGAACAAAAAGTAAAATGTAGAGCTTAACAAGATCTACAAAATAATATTAAATACAACAATGCACTAACTACGAAAATCTGGA</canonical_amplicon>
		<polymorphic_amplicon>GACACATGGAACTAGACACATAAGCCGCTGGCCAATTTCGACCCCATGATAAATAGCGTAATATCTTTCCGATTTGCCAGAAAACTTCRGAGTATACTAAACAAATCAAGAGCTTCATTTTTGTAGTTGACAACATTTTTGTGAAATCTTATCTAGAAAAGATGCGCCAGATTGAAGTGGAAAGGTTCGCACAAAATTCAGGCTGGTCAAGTCGTGCCCATCACTCTCTGGTGTATAACTCAGCTCAAAATTGGAATTTTTGTGCAGAACAAAAAGTAAAATGTAGAGCTTAACAAGATCTACAAAATAATATTAAATACAACAATGCACTAACTACGAAAATCTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33886</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>250625</contig_pos>
        <strand>+</strand>
        <context>ATCGCTGCAG[C/G]TGCTCCACCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGCGTCCCGATCAGATTGGACCGAGACGAAGCCATCAACAATCGCTGCAG</left_flank>
        <right_flank>TGCTCCACCAGCTGCTCAGCCATCAAGATCGGTGCCAGGCCCAATCGGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGGATCCGAGACTAGCTGCACAGAGTCAGAGATCGGATCCAAGATGGGCATCTCCCATGGAAACATTGTACCCGGAAGAGCCCGATACGATTATGGTGGATCCGACGCCAGAACCTGAAGCCGATCCATCGTTGATTGATGAACCGATCCCATTGGTTTTCAACCGACCACCTCCACCGATCCCATCGAATTTTAATTTTAATCAGCCACCTCCACCGATTGCTCAGCCTCCACCGGTTGCTCCTCAAGTTCGTGTTGATCTTCCAAGAGCCTCCCGATCTGATTGGACCGAGATGAAGCGTTCAACGATAGCTCCAGCTGCTCCACCAGCTGCTGAGCCGCCAAGACCAGTTCCAGCTCCAGCCAATCCTCCAGGGAGATCGGCTCCACTTCTACAAGCTGCTCAGCCTCCATCGGTGGCTCCTCAAGTTCATGTTGATCCTCCAAGAGCGTCCCGATCAGATTGGACCGAGACGAAGCCATCAACAATCGCTGCAGCTGCTCCACCAGCTGCTCAGCCATCAAGATCGGTGCCAGGCCCAATCGGTCCGTTTGGAAGATCTGCTCCACCTCCACCAGCTGCTCCACCGATCCCTCCCCAAATTCGTGTCGATCCTCCAAGAGAGACGAAGCCGTCTACGATTGCTCAGCCTTCACAATCTGCTGCTCCACCGGCTCCAATTCCACCACCAGCTGCTCAACAATCAAGATCCGTCCCAGTCCCGCCAGCTGCTGCTTCATCCAGCCCAGCACCCACCCGAATCGATCTATCTGAAAGGACTTTGGCTAGGCTAGCACAAATTGCTCCATCTTCCCAAGCTGCTCAGCCAGAATCCGCTCCTTGCCAACCACGACGCCAAATCACAAGATCCGATTTCGAGGGACCAGCGACGCGGACAAGAGGACGCTCGAGAGGTGGATCTATGGACACTTCACCAGTCTTCAGACAAGCTCCTCGCCGATCCAATTTCCGAGCCAGATCCACTGATGGAGACGATG</canonical>
            <polymorphic>CAGGATCCGAGACTAGCTGCACAGAGTCAGAGATCGGATCCAAGATGGGCATCTCCCATGGAAACATTGTACCCGGAAGAGCCCGATACGATTATGGTGGATCCGACGCCAGAACCTGAAGCCGATCCATCGTTGATTGATGAACCGATCCCATTGGTTTTCAACCGACCACCTCCACCGATCCCATCGAATTTTAATTTTAATCAGCCACCTCCACCGATTGCTCAGCCTCCACCGGTTGCTCCTCAAGTTCGTGTTGATCTTCCAAGAGCCTCCCGATCTGATTGGACCGAGATGAAGCGTTCAACGATAGCTCCAGCTGCTCCACCAGCTGCTGAGCCGCCAAGACCAGTTCCAGCTCCAGCCAATCCTCCAGGGAGATCGGCTCCACTTCTACAAGCTGCTCAGCCTCCATCGGTGGCTCCTCAAGTTCATGTTGATCCTCCAAGAGCGTCCCGATCAGATTGGACCGAGACGAAGCCATCAACAATCGCTGCAGSTGCTCCACCAGCTGCTCAGCCATCAAGATCGGTGCCAGGCCCAATCGGTCCGTTTGGAAGATCTGCTCCACCTCCACCAGCTGCTCCACCGATCCCTCCCCAAATTCGTGTCGATCCTCCAAGAGAGACGAAGCCGTCTACGATTGCTCAGCCTTCACAATCTGCTGCTCCACCGGCTCCAATTCCACCACCAGCTGCTCAACAATCAAGATCCGTCCCAGTCCCGCCAGCTGCTGCTTCATCCAGCCCAGCACCCACCCGAATCGATCTATCTGAAAGGACTTTGGCTAGGCTAGCACAAATTGCTCCATCTTCCCAAGCTGCTCAGCCAGAATCCGCTCCTTGCCAACCACGACGCCAAATCACAAGATCCGATTTCGAGGGACCAGCGACGCGGACAAGAGGACGCTCGAGAGGTGGATCTATGGACACTTCACCAGTCTTCAGACAAGCTCCTCGCCGATCCAATTTCCGAGCCAGATCCACTGATGGAGACGATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>297 132 114 99 90 69 48 42 36 27 16 12 12 6</canonical_bands>
                <polymorphic_bands>297 132 114 111 90 69 48 42 36 27 16 12 6</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>303 177 93 90 84 69 61 36 30 19 12 12 8 6</canonical_bands>
                <polymorphic_bands>303 177 93 90 84 69 61 36 30 19 18 12 8</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>124 86 65 59 53 43 42 41 41 40 36 28 25 24 24 21 21 20 19 19 18 18 16 16 15 13 12 12 8 8 8 8 6 6 5</canonical_bands>
                <polymorphic_bands>124 86 65 59 53 43 42 41 41 40 36 31 28 25 24 24 21 21 20 19 18 18 16 16 15 13 12 8 8 8 8 6 6 5</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>319 270 168 114 69 36 12 12</canonical_bands>
                <polymorphic_bands>319 270 180 114 69 36 12</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>319 270 168 114 69 36 12 12</canonical_bands>
                <polymorphic_bands>319 270 180 114 69 36 12</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>303 180 93 87 84 69 69 36 30 16 12 12 6 3</canonical_bands>
                <polymorphic_bands>303 180 93 87 84 69 69 36 30 18 16 12 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATGTTGATCCTCCAAGAG</pcr_primer_p1>
		<pcr_primer_p2>GACGGATCTTGATTGTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>286</pcr_amplicon_size>
		<canonical_amplicon>TCATGTTGATCCTCCAAGAGCGTCCCGATCAGATTGGACCGAGACGAAGCCATCAACAATCGCTGCAGCTGCTCCACCAGCTGCTCAGCCATCAAGATCGGTGCCAGGCCCAATCGGTCCGTTTGGAAGATCTGCTCCACCTCCACCAGCTGCTCCACCGATCCCTCCCCAAATTCGTGTCGATCCTCCAAGAGAGACGAAGCCGTCTACGATTGCTCAGCCTTCACAATCTGCTGCTCCACCGGCTCCAATTCCACCACCAGCTGCTCAACAATCAAGATCCGTC</canonical_amplicon>
		<polymorphic_amplicon>TCATGTTGATCCTCCAAGAGCGTCCCGATCAGATTGGACCGAGACGAAGCCATCAACAATCGCTGCAGSTGCTCCACCAGCTGCTCAGCCATCAAGATCGGTGCCAGGCCCAATCGGTCCGTTTGGAAGATCTGCTCCACCTCCACCAGCTGCTCCACCGATCCCTCCCCAAATTCGTGTCGATCCTCCAAGAGAGACGAAGCCGTCTACGATTGCTCAGCCTTCACAATCTGCTGCTCCACCGGCTCCAATTCCACCACCAGCTGCTCAACAATCAAGATCCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33887</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>311189</contig_pos>
        <strand>+</strand>
        <context>GAGAATTTTT[C/T]CGAAATCTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGTGTCATTTATAGACTGGTGATACTAAATTAGAAAATTGAGAATTTTT</left_flank>
        <right_flank>CGAAATCTTGGAAAATCTGAAAACAGTTTTTACTTGAATTTCCAGAAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTCAGAAGACATCTTTTTGGTCCGTTTTTTATCCGTTTTTCATGAACCAGAGCTTTTTTGGAGTCTAAACTTCAGAAGAAAACCACAGAAGATGTCTTCTTTTGGAATCTTCAGAAGACGTCAACGCCTCCAACCTTCTCCGCTGACAACCTCCCCCCTCTAAACAATGATAAATGGCCTTCGTTTCACACTTGTCGCTTTATCATTTATCAATCTCCCTTGAGGAAAACCGGTCCCCTCCTTACCGTTTTCGAAAATCTGAATGACCTCTTCTTCTCCTTCTTCTGAATACGACAAGCCAAAACAGATGGTTGACATGTCTCTCCCGCTTGTTCGCTTTGGATATTTTAATCTCCCATTTATAATAGATTTGTTATATCATGGACATTAATTTAATATTTATGGGTTGTCGCTGATTTTTGAAAATTCAGAAGGTTCTCCGAATCTTAGTGTCATTTATAGACTGGTGATACTAAATTAGAAAATTGAGAATTTTTCCGAAATCTTGGAAAATCTGAAAACAGTTTTTACTTGAATTTCCAGAAATTTCCGAAACTCTAGAAAATTGAAAAGTCCAAAAAGTTTGGAATTTTCACAGGTTCCAAATTATTTTTTTTTCATATCTTTGAGGTTTTCGTTACTGAAAATTTTTAGAAACCTAGTTCTGAAAATCTATAAATTTAAAAAAAATTCCAAAATTTCGAATGCCTTTTCCCTCCATTTTTCCCATGAAGACCGGAATTTTCCCTTTTTGCCGTTCTCCTTCTTCCTCCTCCTCTTCCTCATCAAAATACTGTCCGTCAATAGGCGATTAACCGTTAGGGATCACTCTTTTTCCCTCTCTCTCCCTTTTTTCGGAATTTTTCCACACCCTCCAAAATTGGGCAACATGTTGGCATCATCAAGATAATAACACTTGTCCCACCTATTTTTTTTCTGAATCGATGAATTTTTTCTTTATAATCCCATCCTATACGTTCTTGTGAGCTTAATTATCT</canonical>
            <polymorphic>TCTTCAGAAGACATCTTTTTGGTCCGTTTTTTATCCGTTTTTCATGAACCAGAGCTTTTTTGGAGTCTAAACTTCAGAAGAAAACCACAGAAGATGTCTTCTTTTGGAATCTTCAGAAGACGTCAACGCCTCCAACCTTCTCCGCTGACAACCTCCCCCCTCTAAACAATGATAAATGGCCTTCGTTTCACACTTGTCGCTTTATCATTTATCAATCTCCCTTGAGGAAAACCGGTCCCCTCCTTACCGTTTTCGAAAATCTGAATGACCTCTTCTTCTCCTTCTTCTGAATACGACAAGCCAAAACAGATGGTTGACATGTCTCTCCCGCTTGTTCGCTTTGGATATTTTAATCTCCCATTTATAATAGATTTGTTATATCATGGACATTAATTTAATATTTATGGGTTGTCGCTGATTTTTGAAAATTCAGAAGGTTCTCCGAATCTTAGTGTCATTTATAGACTGGTGATACTAAATTAGAAAATTGAGAATTTTTYCGAAATCTTGGAAAATCTGAAAACAGTTTTTACTTGAATTTCCAGAAATTTCCGAAACTCTAGAAAATTGAAAAGTCCAAAAAGTTTGGAATTTTCACAGGTTCCAAATTATTTTTTTTTCATATCTTTGAGGTTTTCGTTACTGAAAATTTTTAGAAACCTAGTTCTGAAAATCTATAAATTTAAAAAAAATTCCAAAATTTCGAATGCCTTTTCCCTCCATTTTTCCCATGAAGACCGGAATTTTCCCTTTTTGCCGTTCTCCTTCTTCCTCCTCCTCTTCCTCATCAAAATACTGTCCGTCAATAGGCGATTAACCGTTAGGGATCACTCTTTTTCCCTCTCTCTCCCTTTTTTCGGAATTTTTCCACACCCTCCAAAATTGGGCAACATGTTGGCATCATCAAGATAATAACACTTGTCCCACCTATTTTTTTTCTGAATCGATGAATTTTTTCTTTATAATCCCATCCTATACGTTCTTGTGAGCTTAATTATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>191 147 144 115 81 70 60 58 39 35 26 17 11 6</canonical_bands>
                <polymorphic_bands>191 147 144 115 81 75 70 60 39 35 26 11 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGATATTTTAATCTCCCATTT</pcr_primer_p1>
		<pcr_primer_p2>AAACTTTTTGGACTTTTCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTGGATATTTTAATCTCCCATTTATAATAGATTTGTTATATCATGGACATTAATTTAATATTTATGGGTTGTCGCTGATTTTTGAAAATTCAGAAGGTTCTCCGAATCTTAGTGTCATTTATAGACTGGTGATACTAAATTAGAAAATTGAGAATTTTTCCGAAATCTTGGAAAATCTGAAAACAGTTTTTACTTGAATTTCCAGAAATTTCCGAAACTCTAGAAAATTGAAAAGTCCAAAAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGGATATTTTAATCTCCCATTTATAATAGATTTGTTATATCATGGACATTAATTTAATATTTATGGGTTGTCGCTGATTTTTGAAAATTCAGAAGGTTCTCCGAATCTTAGTGTCATTTATAGACTGGTGATACTAAATTAGAAAATTGAGAATTTTTYCGAAATCTTGGAAAATCTGAAAACAGTTTTTACTTGAATTTCCAGAAATTTCCGAAACTCTAGAAAATTGAAAAGTCCAAAAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33888</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>313328</contig_pos>
        <strand>+</strand>
        <context>AATCGACGCC[A/C]TTTTTTTTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTCAACCCCCTATTCTTGTGGTTGTGACCCCCGGAAATTAATCGACGCC</left_flank>
        <right_flank>TTTTTTTTGGTCCCGTTTTTTTGGAGTCATTGGTCAAGCGAGTAGTACTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTGTCAATTGATAAAATGTCTATGATACTTTGATAAACAATTTATCAGTTGATAAATTTTTTATATCTTTGACAGGAGCCAAGATAAATTGGCACAAAGATAAAAGTTAGGGGAAGCTTTAGCTTTTTTTAGGTGTTATGGTACTTTCATGTTCTTTCCAGGTTCTTTTAGGTTTCAGGGTTAAAAATACTAGCTTATGAGTTTGCAGTCGGAGTTATGAATCTTTTGGATTACTGTAGAAATTTCGAAAGACTGTCGAACATTCAAGAATGTTCCTTATAAGAACCTGCCATCAAATGTTCAATTTTTGACTTCTTCTCTAACATATTAAAACAACTTTTAATCAATTTTGGTCCCAAATTTTTGACATTTAGCCTGCCTGTTCTTTCCTATTTTAGGGTACGTACACATAGTTTTTTAATGAATTTGAAATGAGCCTTTTTGGGTTCTCAACCCCCTATTCTTGTGGTTGTGACCCCCGGAAATTAATCGACGCCTTTTTTTTTGGTCCCGTTTTTTTGGAGTCATTGGTCAAGCGAGTAGTACTGGGTTTTGCACAATTGGAGAATGTTCACTTGCCATGGTTAAGCTTAAAATTCAAAGTTTTATCCGTTTATGAGCCTTTTTAGGTCCAAAATTATTTTCTAGAGCCCAGAAGATAATGACTGATCTAGAGGCCAAAAATGAATCGATGCGCGCCAAGCCATAACTTATTTCACACTCAATATTTTTAAATCATCTAAATTGGAAATAATAGAAAAATACAAGAGCTACAAAATGATACTATTTGGATTTAAGTATCCTCTATGAACAAAGTTACAAGCCAAAAACCATCCAAGGCGACTGTGTTATAGCTTATAACTATGTTCATAGACAGGGTACAGCTTCTCAAGTTGTATCATCCTCTGGGTCTTAAAATTTTCTATCACATCCATTTTATGCTATTCGCCGTGAATAGCCCTCCAACCAATTTTAATTACCCTAAGCTTTTAATACCT</canonical>
            <polymorphic>ATGTGTCAATTGATAAAATGTCTATGATACTTTGATAAACAATTTATCAGTTGATAAATTTTTTATATCTTTGACAGGAGCCAAGATAAATTGGCACAAAGATAAAAGTTAGGGGAAGCTTTAGCTTTTTTTAGGTGTTATGGTACTTTCATGTTCTTTCCAGGTTCTTTTAGGTTTCAGGGTTAAAAATACTAGCTTATGAGTTTGCAGTCGGAGTTATGAATCTTTTGGATTACTGTAGAAATTTCGAAAGACTGTCGAACATTCAAGAATGTTCCTTATAAGAACCTGCCATCAAATGTTCAATTTTTGACTTCTTCTCTAACATATTAAAACAACTTTTAATCAATTTTGGTCCCAAATTTTTGACATTTAGCCTGCCTGTTCTTTCCTATTTTAGGGTACGTACACATAGTTTTTTAATGAATTTGAAATGAGCCTTTTTGGGTTCTCAACCCCCTATTCTTGTGGTTGTGACCCCCGGAAATTAATCGACGCCMTTTTTTTTGGTCCCGTTTTTTTGGAGTCATTGGTCAAGCGAGTAGTACTGGGTTTTGCACAATTGGAGAATGTTCACTTGCCATGGTTAAGCTTAAAATTCAAAGTTTTATCCGTTTATGAGCCTTTTTAGGTCCAAAATTATTTTCTAGAGCCCAGAAGATAATGACTGATCTAGAGGCCAAAAATGAATCGATGCGCGCCAAGCCATAACTTATTTCACACTCAATATTTTTAAATCATCTAAATTGGAAATAATAGAAAAATACAAGAGCTACAAAATGATACTATTTGGATTTAAGTATCCTCTATGAACAAAGTTACAAGCCAAAAACCATCCAAGGCGACTGTGTTATAGCTTATAACTATGTTCATAGACAGGGTACAGCTTCTCAAGTTGTATCATCCTCTGGGTCTTAAAATTTTCTATCACATCCATTTTATGCTATTCGCCGTGAATAGCCCTCCAACCAATTTTAATTACCCTAAGCTTTTAATACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCTTTCCTATTTTAGGGTACG</pcr_primer_p1>
		<pcr_primer_p2>TAAAAAGGCTCATAAACGGATA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTTCTTTCCTATTTTAGGGTACGTACACATAGTTTTTTAATGAATTTGAAATGAGCCTTTTTGGGTTCTCAACCCCCTATTCTTGTGGTTGTGACCCCCGGAAATTAATCGACGCCTTTTTTTTTGGTCCCGTTTTTTTGGAGTCATTGGTCAAGCGAGTAGTACTGGGTTTTGCACAATTGGAGAATGTTCACTTGCCATGGTTAAGCTTAAAATTCAAAGTTTTATCCGTTTATGAGCCTTTTTA</canonical_amplicon>
		<polymorphic_amplicon>GTTCTTTCCTATTTTAGGGTACGTACACATAGTTTTTTAATGAATTTGAAATGAGCCTTTTTGGGTTCTCAACCCCCTATTCTTGTGGTTGTGACCCCCGGAAATTAATCGACGCCMTTTTTTTTGGTCCCGTTTTTTTGGAGTCATTGGTCAAGCGAGTAGTACTGGGTTTTGCACAATTGGAGAATGTTCACTTGCCATGGTTAAGCTTAAAATTCAAAGTTTTATCCGTTTATGAGCCTTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33889</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>316914</contig_pos>
        <strand>+</strand>
        <context>CGATTACTGT[C/T]TACGCAAACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCACTCCTTATCCAATCAATCAGCGAAAAAAGTGACTAACCGATTACTGT</left_flank>
        <right_flank>TACGCAAACATACGAACATTTTAACAAGACACAATATAAATTGGTCATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATAAGGCTTTTATATAATTTTGTAGAGCTTATTAAGATCTTTATTTTTTCTTGTAAATCATTTCAAAATATCGACTTTGAAGAAAGTTACAAGCTTTTTAAGCATTATGCCTTATCCGTTTTGTGTTCTTGCTCGCTTGTCGCTTCTTGGCAAACCCCTTGTTTTCTCCTTGTTTTGGAATTAGCAAATTGAATTTTGTATCATTCGGCAGAACTTTTTAATATCTTCATTTTTCATTTTAGTTTGTTTCAAAATCTTAACTTTGAAGCGAGCTAACCCGTTCACAAGCTCCTCATAAGGCTTCTGCTCCAAATCTGAAAATTCAAATTTCAGTTTTTGTTACAATCAACACTTTTAACTTTGAAGCGTTTCAAGCCCTAGACGCTTGACCTACCGTATCACTATTCTTATCACTATTCATTCATACCAAAATGACACATAACACGAGCACTCCTTATCCAATCAATCAGCGAAAAAAGTGACTAACCGATTACTGTCTACGCAAACATACGAACATTTTAACAAGACACAATATAAATTGGTCATGATGAAGAAATTTTCTCTCACTTTTCCTTCTTTTTTTTTGCGAAGAAACAAGAATTGGAATTACTCATTGGGGTTGCATTGATGACAACGAGCTGATTGATCATTTTGAGGGAGAATCTAGGAATTCTATTTTTGAGACTTTGTAACTTTTTTAGTTTTCAATACTTTTTGAAAATTTAAAATGATAATGTAGTTCTTTCAAAGTTCTACAACAAAATATAAGATTTGAGTAAATTTAATTTATTTTTGGTCTGCTGTAAGACGATAAACATGGGGGGGGGGGGGTGTACCTCAACGCTGAAACATCCTGCGCTTTGAGTGTTTTAATTTGCTTCAAATTCAACCTTTTTGGAAATTTTAAATCAGTAAATGTAGCTCTCAAAAAGTTCTACAAAACGTTATAAAATTTATGTAGTTTTGATCCAAGTTAGCTTGCCCCAAAAGCAATGAAC</canonical>
            <polymorphic>AAATAAGGCTTTTATATAATTTTGTAGAGCTTATTAAGATCTTTATTTTTTCTTGTAAATCATTTCAAAATATCGACTTTGAAGAAAGTTACAAGCTTTTTAAGCATTATGCCTTATCCGTTTTGTGTTCTTGCTCGCTTGTCGCTTCTTGGCAAACCCCTTGTTTTCTCCTTGTTTTGGAATTAGCAAATTGAATTTTGTATCATTCGGCAGAACTTTTTAATATCTTCATTTTTCATTTTAGTTTGTTTCAAAATCTTAACTTTGAAGCGAGCTAACCCGTTCACAAGCTCCTCATAAGGCTTCTGCTCCAAATCTGAAAATTCAAATTTCAGTTTTTGTTACAATCAACACTTTTAACTTTGAAGCGTTTCAAGCCCTAGACGCTTGACCTACCGTATCACTATTCTTATCACTATTCATTCATACCAAAATGACACATAACACGAGCACTCCTTATCCAATCAATCAGCGAAAAAAGTGACTAACCGATTACTGTYTACGCAAACATACGAACATTTTAACAAGACACAATATAAATTGGTCATGATGAAGAAATTTTCTCTCACTTTTCCTTCTTTTTTTTTGCGAAGAAACAAGAATTGGAATTACTCATTGGGGTTGCATTGATGACAACGAGCTGATTGATCATTTTGAGGGAGAATCTAGGAATTCTATTTTTGAGACTTTGTAACTTTTTTAGTTTTCAATACTTTTTGAAAATTTAAAATGATAATGTAGTTCTTTCAAAGTTCTACAACAAAATATAAGATTTGAGTAAATTTAATTTATTTTTGGTCTGCTGTAAGACGATAAACATGGGGGGGGGGGGGTGTACCTCAACGCTGAAACATCCTGCGCTTTGAGTGTTTTAATTTGCTTCAAATTCAACCTTTTTGGAAATTTTAAATCAGTAAATGTAGCTCTCAAAAAGTTCTACAAAACGTTATAAAATTTATGTAGTTTTGATCCAAGTTAGCTTGCCCCAAAAGCAATGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATACCAAAATGACACATAACA</pcr_primer_p1>
		<pcr_primer_p2>ATTCCTAGATTCTCCCTCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCATACCAAAATGACACATAACACGAGCACTCCTTATCCAATCAATCAGCGAAAAAAGTGACTAACCGATTACTGTCTACGCAAACATACGAACATTTTAACAAGACACAATATAAATTGGTCATGATGAAGAAATTTTCTCTCACTTTTCCTTCTTTTTTTTTGCGAAGAAACAAGAATTGGAATTACTCATTGGGGTTGCATTGATGACAACGAGCTGATTGATCATTTTGAGGGAGAATCTAGGAAT</canonical_amplicon>
		<polymorphic_amplicon>TCATACCAAAATGACACATAACACGAGCACTCCTTATCCAATCAATCAGCGAAAAAAGTGACTAACCGATTACTGTYTACGCAAACATACGAACATTTTAACAAGACACAATATAAATTGGTCATGATGAAGAAATTTTCTCTCACTTTTCCTTCTTTTTTTTTGCGAAGAAACAAGAATTGGAATTACTCATTGGGGTTGCATTGATGACAACGAGCTGATTGATCATTTTGAGGGAGAATCTAGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33890</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>332618</contig_pos>
        <strand>+</strand>
        <context>TGATCATTTT[C/T]GGGGGGGGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGCGAACGGAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTT</left_flank>
        <right_flank>GGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGCATTTGCAGGTAAGCAGAACATTGGAAATTTGATCTACCGTAACCTAGCAGAATCTGAGCAATTTAGCGCTATTTTCGTTCGGAGAAGCTTCTGGCGTTTTCGAAGGTTCTAGACCTCCTGAAGCGTTATTTTTGGTCCGCTTTTCTAAAGTAGCGTCTAGACGTCGCCTAGAAAAATCTGACCATTTTTGCCCTAGACCTCCCGGACCCTAATTTTTGATTCCCCCTTTAAGGGGGGGGGGGGCGTCTTGGTGATAATAAGGCTGAGATGGAATTAGTTGTTTATTAGTTTCGAAAGAAGGCTTTAAAGCTTACGTTCTTACTCCGTCGCCTTCAATAGATGACGTTCAGCCATCTGGTGGAGCGCGGCAATTGAAAATGAGAACAAAAGGAATGGACTTTTGAAGGAAGGGGGGTATAACACAGGAGAAAGAAGAGGTCAAATATCAGCGAACGGAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTGAGAGCCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTTCAGCCAGGAGATCAGGAGGTCTAGGAGGCATCCAGATGTCTGTAAGATTGTCAGCAATCTGATATTCAAGCTGGAGACGTCAAGCTCTCCAGAAACTCGAAAGTTGGGTTTCAAGACCCTTTTCAGGTCCGGGTACTTCTGAAATAGCTAGGTTACTGTAGCCTAGTGGTCCTCACGTTTTCCGGATTTTCGAAGCTTATTCTTGATAGGACGATCTCTTTGGAACCTTGGAACCTTGGAACCTAGCCCTTTCGATCCTGAAACCGTGAATACTAGGAATCTAAGATCCTTGGAATCCTGGACACACAGACAGACGTATTCCTTGAACCTTGGAAACATTTGATCTTCAGATCCTAAGATCCCCAGGTTTAGGAATCTTTGGATCCTTAGAAT</canonical>
            <polymorphic>CCGCATTTGCAGGTAAGCAGAACATTGGAAATTTGATCTACCGTAACCTAGCAGAATCTGAGCAATTTAGCGCTATTTTCGTTCGGAGAAGCTTCTGGCGTTTTCGAAGGTTCTAGACCTCCTGAAGCGTTATTTTTGGTCCGCTTTTCTAAAGTAGCGTCTAGACGTCGCCTAGAAAAATCTGACCATTTTTGCCCTAGACCTCCCGGACCCTAATTTTTGATTCCCCCTTTAAGGGGGGGGGGGGCGTCTTGGTGATAATAAGGCTGAGATGGAATTAGTTGTTTATTAGTTTCGAAAGAAGGCTTTAAAGCTTACGTTCTTACTCCGTCGCCTTCAATAGATGACGTTCAGCCATCTGGTGGAGCGCGGCAATTGAAAATGAGAACAAAAGGAATGGACTTTTGAAGGAAGGGGGGTATAACACAGGAGAAAGAAGAGGTCAAATATCAGCGAACGGAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTYGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTGAGAGCCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTTCAGCCAGGAGATCAGGAGGTCTAGGAGGCATCCAGATGTCTGTAAGATTGTCAGCAATCTGATATTCAAGCTGGAGACGTCAAGCTCTCCAGAAACTCGAAAGTTGGGTTTCAAGACCCTTTTCAGGTCCGGGTACTTCTGAAATAGCTAGGTTACTGTAGCCTAGTGGTCCTCACGTTTTCCGGATTTTCGAAGCTTATTCTTGATAGGACGATCTCTTTGGAACCTTGGAACCTTGGAACCTAGCCCTTTCGATCCTGAAACCGTGAATACTAGGAATCTAAGATCCTTGGAATCCTGGACACACAGACAGACGTATTCCTTGAACCTTGGAAACATTTGATCTTCAGATCCTAAGATCCCCAGGTTTAGGAATCTTTGGATCCTTAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAATTGAAAATGAGAACAAA</pcr_primer_p1>
		<pcr_primer_p2>AAGACTTCTAGATCCCCTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>GCAATTGAAAATGAGAACAAAAGGAATGGACTTTTGAAGGAAGGGGGGTATAACACAGGAGAAAGAAGAGGTCAAATATCAGCGAACGGAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTGGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTGAGAGCCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTT</canonical_amplicon>
		<polymorphic_amplicon>GCAATTGAAAATGAGAACAAAAGGAATGGACTTTTGAAGGAAGGGGGGTATAACACAGGAGAAAGAAGAGGTCAAATATCAGCGAACGGAAGTTGTTTGGGACTTGTCTCAGGGCTAATGATCATTTTYGGGGGGGGGGGGGGTTTGAAATCTGGGACCTAGGTGTTGAACCCTAGATTCTGAGAGCCGGGGAAAATTGGAACGTCCTGGAAGCGTTCAGGGGATCTAGAAGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33891</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>333538</contig_pos>
        <strand></strand>
        <context>AGCATCTAGA[T/C]gaatccagga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GATGTTTTGGACTATTTGGAGATGTTCCGAGGGCTTGGAAAGCATCTAGA</left_flank>
        <right_flank>GAATCCAGGAGCTTCCAAAAGCGTCTAGAAGCATCTAGAAGGATCTGAGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGTATTCCTTGAACCTTGGAAACATTTGATCTTCAGATCCTAAGATCCCCAGGTTTAGGAATCTTTGGATCCTTAGAATCCTCGGTACCATAGCTTTATACCCATCCTTTTTGGGCTCTTTGCCACTTGTTCTCCCCATAATTTCCCGCAAAGTCATTATTGCTCATCATAATAATGTGAACTCTTGACAACGAACATTTTTGTTGTCAAGCAGAGCAAGTTTATGAGCCCAGTCTATGTGTAGTTGTGTTGTCGTTCCTCTCTTCTTATGATGATTGATGGGAAGAACACGCGGACATGTATACATACAATGAGGGATGGAAATGTATCCGCGAGACACGAGACAAGACGATTTTAGCATATGAATAGGAGAGAGGAGATTTTGATGATGGGTCCAGGGAGAGAGGGGAACAACTTTACCTTGAAAAACGTTTTGGATCCTTGGAAGGATGTTTTGGACTATTTGGAGATGTTCCGAGGGCTTGGAAAGCATCTAGATGAATCCAGGAGCTTCCAAAAGCGTCTAGAAGCATCTAGAAGGATCTGAGAGCATCTAGAGGGATCTAGAAGCATCTAGTAGCATCTAGAAGAATCCAGAAGCATCTAGAAGGATTCAAGAGCATCTGGAGGCGTTTAGACGCTTCTAGACGTGTTTGAGAGCATCTTGAAGGATCTGAAAGCACCCAGAAGGATCCAGGAGCATGTATCAGTATCTAAATGGATCTGAAGGCATATGAAAGAATCTAGAAGCCTCTAGTGCTATCTGGAAGTAGCTTAATCGCTGGAATCCTGTCAGAATCGGTCTAGGACGATTTTATGCACTATTAGCGTTTCGATCCTTAGCCCAAGGTCTTGGAACCGCTCGCGACCTTTTCAACTTGTTGTTTGATCTTCCTTAGCTAATCCAAGCTAGCTCACTCAGCTAGATTGACGTTTCGGACCATATTCCAAAGGACCGCCAGTCTCTAGAGGCTCTACCGCAACACGCCGACACTCATT</canonical>
            <polymorphic>ACGTATTCCTTGAACCTTGGAAACATTTGATCTTCAGATCCTAAGATCCCCAGGTTTAGGAATCTTTGGATCCTTAGAATCCTCGGTACCATAGCTTTATACCCATCCTTTTTGGGCTCTTTGCCACTTGTTCTCCCCATAATTTCCCGCAAAGTCATTATTGCTCATCATAATAATGTGAACTCTTGACAACGAACATTTTTGTTGTCAAGCAGAGCAAGTTTATGAGCCCAGTCTATGTGTAGTTGTGTTGTCGTTCCTCTCTTCTTATGATGATTGATGGGAAGAACACGCGGACATGTATACATACAATGAGGGATGGAAATGTATCCGCGAGACACGAGACAAGACGATTTTAGCATATGAATAGGAGAGAGGAGATTTTGATGATGGGTCCAGGGAGAGAGGGGAACAACTTTACCTTGAAAAACGTTTTGGATCCTTGGAAGGATGTTTTGGACTATTTGGAGATGTTCCGAGGGCTTGGAAAGCATCTAGAYGAATCCAGGAGCTTCCAAAAGCGTCTAGAAGCATCTAGAAGGATCTGAGAGCATCTAGAGGGATCTAGAAGCATCTAGTAGCATCTAGAAGAATCCAGAAGCATCTAGAAGGATTCAAGAGCATCTGGAGGCGTTTAGACGCTTCTAGACGTGTTTGAGAGCATCTTGAAGGATCTGAAAGCACCCAGAAGGATCCAGGAGCATGTATCAGTATCTAAATGGATCTGAAGGCATATGAAAGAATCTAGAAGCCTCTAGTGCTATCTGGAAGTAGCTTAATCGCTGGAATCCTGTCAGAATCGGTCTAGGACGATTTTATGCACTATTAGCGTTTCGATCCTTAGCCCAAGGTCTTGGAACCGCTCGCGACCTTTTCAACTTGTTGTTTGATCTTCCTTAGCTAATCCAAGCTAGCTCACTCAGCTAGATTGACGTTTCGGACCATATTCCAAAGGACCGCCAGTCTCTAGAGGCTCTACCGCAACACGCCGACACTCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>504 323 173</canonical_bands>
                <polymorphic_bands>827 173</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGGATGTTTTGGACTATTTG</pcr_primer_p1>
		<pcr_primer_p2>GTCCTAGACCGATTCTGACA</pcr_primer_p2>
		<pcr_amplicon_size>366</pcr_amplicon_size>
		<canonical_amplicon>GAAGGATGTTTTGGACTATTTGGAGATGTTCCGAGGGCTTGGAAAGCATCTAGATGAATCCAGGAGCTTCCAAAAGCGTCTAGAAGCATCTAGAAGGATCTGAGAGCATCTAGAGGGATCTAGAAGCATCTAGTAGCATCTAGAAGAATCCAGAAGCATCTAGAAGGATTCAAGAGCATCTGGAGGCGTTTAGACGCTTCTAGACGTGTTTGAGAGCATCTTGAAGGATCTGAAAGCACCCAGAAGGATCCAGGAGCATGTATCAGTATCTAAATGGATCTGAAGGCATATGAAAGAATCTAGAAGCCTCTAGTGCTATCTGGAAGTAGCTTAATCGCTGGAATCCTGTCAGAATCGGTCTAGGAC</canonical_amplicon>
		<polymorphic_amplicon>GAAGGATGTTTTGGACTATTTGGAGATGTTCCGAGGGCTTGGAAAGCATCTAGAYGAATCCAGGAGCTTCCAAAAGCGTCTAGAAGCATCTAGAAGGATCTGAGAGCATCTAGAGGGATCTAGAAGCATCTAGTAGCATCTAGAAGAATCCAGAAGCATCTAGAAGGATTCAAGAGCATCTGGAGGCGTTTAGACGCTTCTAGACGTGTTTGAGAGCATCTTGAAGGATCTGAAAGCACCCAGAAGGATCCAGGAGCATGTATCAGTATCTAAATGGATCTGAAGGCATATGAAAGAATCTAGAAGCCTCTAGTGCTATCTGGAAGTAGCTTAATCGCTGGAATCCTGTCAGAATCGGTCTAGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33892</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>333563</contig_pos>
        <strand></strand>
        <context>ccaaaagcgt[C/G]tagaagcatc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCCGAGGGCTTGGAAAGCATCTAGATGAATCCAGGAGCTTCCAAAAGCGT</left_flank>
        <right_flank>TAGAAGCATCTAGAAGGATCTGAGAGCATCTAGAGGGATCTAGAAGCATC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGATCTTCAGATCCTAAGATCCCCAGGTTTAGGAATCTTTGGATCCTTAGAATCCTCGGTACCATAGCTTTATACCCATCCTTTTTGGGCTCTTTGCCACTTGTTCTCCCCATAATTTCCCGCAAAGTCATTATTGCTCATCATAATAATGTGAACTCTTGACAACGAACATTTTTGTTGTCAAGCAGAGCAAGTTTATGAGCCCAGTCTATGTGTAGTTGTGTTGTCGTTCCTCTCTTCTTATGATGATTGATGGGAAGAACACGCGGACATGTATACATACAATGAGGGATGGAAATGTATCCGCGAGACACGAGACAAGACGATTTTAGCATATGAATAGGAGAGAGGAGATTTTGATGATGGGTCCAGGGAGAGAGGGGAACAACTTTACCTTGAAAAACGTTTTGGATCCTTGGAAGGATGTTTTGGACTATTTGGAGATGTTCCGAGGGCTTGGAAAGCATCTAGATGAATCCAGGAGCTTCCAAAAGCGTCTAGAAGCATCTAGAAGGATCTGAGAGCATCTAGAGGGATCTAGAAGCATCTAGTAGCATCTAGAAGAATCCAGAAGCATCTAGAAGGATTCAAGAGCATCTGGAGGCGTTTAGACGCTTCTAGACGTGTTTGAGAGCATCTTGAAGGATCTGAAAGCACCCAGAAGGATCCAGGAGCATGTATCAGTATCTAAATGGATCTGAAGGCATATGAAAGAATCTAGAAGCCTCTAGTGCTATCTGGAAGTAGCTTAATCGCTGGAATCCTGTCAGAATCGGTCTAGGACGATTTTATGCACTATTAGCGTTTCGATCCTTAGCCCAAGGTCTTGGAACCGCTCGCGACCTTTTCAACTTGTTGTTTGATCTTCCTTAGCTAATCCAAGCTAGCTCACTCAGCTAGATTGACGTTTCGGACCATATTCCAAAGGACCGCCAGTCTCTAGAGGCTCTACCGCAACACGCCGACACTCATTACGGCTAAATGATGCGTGATATTAT</canonical>
            <polymorphic>TTTGATCTTCAGATCCTAAGATCCCCAGGTTTAGGAATCTTTGGATCCTTAGAATCCTCGGTACCATAGCTTTATACCCATCCTTTTTGGGCTCTTTGCCACTTGTTCTCCCCATAATTTCCCGCAAAGTCATTATTGCTCATCATAATAATGTGAACTCTTGACAACGAACATTTTTGTTGTCAAGCAGAGCAAGTTTATGAGCCCAGTCTATGTGTAGTTGTGTTGTCGTTCCTCTCTTCTTATGATGATTGATGGGAAGAACACGCGGACATGTATACATACAATGAGGGATGGAAATGTATCCGCGAGACACGAGACAAGACGATTTTAGCATATGAATAGGAGAGAGGAGATTTTGATGATGGGTCCAGGGAGAGAGGGGAACAACTTTACCTTGAAAAACGTTTTGGATCCTTGGAAGGATGTTTTGGACTATTTGGAGATGTTCCGAGGGCTTGGAAAGCATCTAGATGAATCCAGGAGCTTCCAAAAGCGTSTAGAAGCATCTAGAAGGATCTGAGAGCATCTAGAGGGATCTAGAAGCATCTAGTAGCATCTAGAAGAATCCAGAAGCATCTAGAAGGATTCAAGAGCATCTGGAGGCGTTTAGACGCTTCTAGACGTGTTTGAGAGCATCTTGAAGGATCTGAAAGCACCCAGAAGGATCCAGGAGCATGTATCAGTATCTAAATGGATCTGAAGGCATATGAAAGAATCTAGAAGCCTCTAGTGCTATCTGGAAGTAGCTTAATCGCTGGAATCCTGTCAGAATCGGTCTAGGACGATTTTATGCACTATTAGCGTTTCGATCCTTAGCCCAAGGTCTTGGAACCGCTCGCGACCTTTTCAACTTGTTGTTTGATCTTCCTTAGCTAATCCAAGCTAGCTCACTCAGCTAGATTGACGTTTCGGACCATATTCCAAAGGACCGCCAGTCTCTAGAGGCTCTACCGCAACACGCCGACACTCATTACGGCTAAATGATGCGTGATATTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>470 106 100 58 50 43 40 30 20 20 13 10 10 10 10 10</canonical_bands>
                <polymorphic_bands>470 106 100 58 50 43 40 40 20 20 13 10 10 10 10</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>310 160 102 100 80 58 30 20 20 20 20 20 11 10 10 10 10 9</canonical_bands>
                <polymorphic_bands>310 160 102 100 80 58 40 20 20 20 20 20 11 10 10 10 9</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>469 222 100 59 40 30 20 20 20 10 10</canonical_bands>
                <polymorphic_bands>469 222 100 59 40 40 20 20 20 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGGACTATTTGGAGATGTTC</pcr_primer_p1>
		<pcr_primer_p2>GTCCTAGACCGATTCTGACA</pcr_primer_p2>
		<pcr_amplicon_size>357</pcr_amplicon_size>
		<canonical_amplicon>TTTGGACTATTTGGAGATGTTCCGAGGGCTTGGAAAGCATCTAGATGAATCCAGGAGCTTCCAAAAGCGTCTAGAAGCATCTAGAAGGATCTGAGAGCATCTAGAGGGATCTAGAAGCATCTAGTAGCATCTAGAAGAATCCAGAAGCATCTAGAAGGATTCAAGAGCATCTGGAGGCGTTTAGACGCTTCTAGACGTGTTTGAGAGCATCTTGAAGGATCTGAAAGCACCCAGAAGGATCCAGGAGCATGTATCAGTATCTAAATGGATCTGAAGGCATATGAAAGAATCTAGAAGCCTCTAGTGCTATCTGGAAGTAGCTTAATCGCTGGAATCCTGTCAGAATCGGTCTAGGAC</canonical_amplicon>
		<polymorphic_amplicon>TTTGGACTATTTGGAGATGTTCCGAGGGCTTGGAAAGCATCTAGATGAATCCAGGAGCTTCCAAAAGCGTSTAGAAGCATCTAGAAGGATCTGAGAGCATCTAGAGGGATCTAGAAGCATCTAGTAGCATCTAGAAGAATCCAGAAGCATCTAGAAGGATTCAAGAGCATCTGGAGGCGTTTAGACGCTTCTAGACGTGTTTGAGAGCATCTTGAAGGATCTGAAAGCACCCAGAAGGATCCAGGAGCATGTATCAGTATCTAAATGGATCTGAAGGCATATGAAAGAATCTAGAAGCCTCTAGTGCTATCTGGAAGTAGCTTAATCGCTGGAATCCTGTCAGAATCGGTCTAGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33893</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>333592</contig_pos>
        <strand></strand>
        <context>tctgagagca[T/C]ctagagggat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCCAGGAGCTTCCAAAAGCGTCTAGAAGCATCTAGAAGGATCTGAGAGCA</left_flank>
        <right_flank>CTAGAGGGATCTAGAAGCATCTAGTAGCATCTAGAAGAATCCAGAAGCAT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAGGAATCTTTGGATCCTTAGAATCCTCGGTACCATAGCTTTATACCCATCCTTTTTGGGCTCTTTGCCACTTGTTCTCCCCATAATTTCCCGCAAAGTCATTATTGCTCATCATAATAATGTGAACTCTTGACAACGAACATTTTTGTTGTCAAGCAGAGCAAGTTTATGAGCCCAGTCTATGTGTAGTTGTGTTGTCGTTCCTCTCTTCTTATGATGATTGATGGGAAGAACACGCGGACATGTATACATACAATGAGGGATGGAAATGTATCCGCGAGACACGAGACAAGACGATTTTAGCATATGAATAGGAGAGAGGAGATTTTGATGATGGGTCCAGGGAGAGAGGGGAACAACTTTACCTTGAAAAACGTTTTGGATCCTTGGAAGGATGTTTTGGACTATTTGGAGATGTTCCGAGGGCTTGGAAAGCATCTAGATGAATCCAGGAGCTTCCAAAAGCGTCTAGAAGCATCTAGAAGGATCTGAGAGCATCTAGAGGGATCTAGAAGCATCTAGTAGCATCTAGAAGAATCCAGAAGCATCTAGAAGGATTCAAGAGCATCTGGAGGCGTTTAGACGCTTCTAGACGTGTTTGAGAGCATCTTGAAGGATCTGAAAGCACCCAGAAGGATCCAGGAGCATGTATCAGTATCTAAATGGATCTGAAGGCATATGAAAGAATCTAGAAGCCTCTAGTGCTATCTGGAAGTAGCTTAATCGCTGGAATCCTGTCAGAATCGGTCTAGGACGATTTTATGCACTATTAGCGTTTCGATCCTTAGCCCAAGGTCTTGGAACCGCTCGCGACCTTTTCAACTTGTTGTTTGATCTTCCTTAGCTAATCCAAGCTAGCTCACTCAGCTAGATTGACGTTTCGGACCATATTCCAAAGGACCGCCAGTCTCTAGAGGCTCTACCGCAACACGCCGACACTCATTACGGCTAAATGATGCGTGATATTATTGGAGTGGCTACACAGCATCAGGCAGTTG</canonical>
            <polymorphic>TTTAGGAATCTTTGGATCCTTAGAATCCTCGGTACCATAGCTTTATACCCATCCTTTTTGGGCTCTTTGCCACTTGTTCTCCCCATAATTTCCCGCAAAGTCATTATTGCTCATCATAATAATGTGAACTCTTGACAACGAACATTTTTGTTGTCAAGCAGAGCAAGTTTATGAGCCCAGTCTATGTGTAGTTGTGTTGTCGTTCCTCTCTTCTTATGATGATTGATGGGAAGAACACGCGGACATGTATACATACAATGAGGGATGGAAATGTATCCGCGAGACACGAGACAAGACGATTTTAGCATATGAATAGGAGAGAGGAGATTTTGATGATGGGTCCAGGGAGAGAGGGGAACAACTTTACCTTGAAAAACGTTTTGGATCCTTGGAAGGATGTTTTGGACTATTTGGAGATGTTCCGAGGGCTTGGAAAGCATCTAGATGAATCCAGGAGCTTCCAAAAGCGTCTAGAAGCATCTAGAAGGATCTGAGAGCAYCTAGAGGGATCTAGAAGCATCTAGTAGCATCTAGAAGAATCCAGAAGCATCTAGAAGGATTCAAGAGCATCTGGAGGCGTTTAGACGCTTCTAGACGTGTTTGAGAGCATCTTGAAGGATCTGAAAGCACCCAGAAGGATCCAGGAGCATGTATCAGTATCTAAATGGATCTGAAGGCATATGAAAGAATCTAGAAGCCTCTAGTGCTATCTGGAAGTAGCTTAATCGCTGGAATCCTGTCAGAATCGGTCTAGGACGATTTTATGCACTATTAGCGTTTCGATCCTTAGCCCAAGGTCTTGGAACCGCTCGCGACCTTTTCAACTTGTTGTTTGATCTTCCTTAGCTAATCCAAGCTAGCTCACTCAGCTAGATTGACGTTTCGGACCATATTCCAAAGGACCGCCAGTCTCTAGAGGCTCTACCGCAACACGCCGACACTCATTACGGCTAAATGATGCGTGATATTATTGGAGTGGCTACACAGCATCAGGCAGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>310 131 102 100 87 80 30 20 20 20 20 20 11 10 10 10 10 9</canonical_bands>
                <polymorphic_bands>310 131 102 100 87 80 30 30 20 20 20 20 11 10 10 10 9</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>440 222 100 88 40 30 20 20 20 10 10</canonical_bands>
                <polymorphic_bands>440 222 100 88 40 30 30 20 20 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGGACTATTTGGAGATGTTC</pcr_primer_p1>
		<pcr_primer_p2>GTCCTAGACCGATTCTGACA</pcr_primer_p2>
		<pcr_amplicon_size>357</pcr_amplicon_size>
		<canonical_amplicon>TTTGGACTATTTGGAGATGTTCCGAGGGCTTGGAAAGCATCTAGATGAATCCAGGAGCTTCCAAAAGCGTCTAGAAGCATCTAGAAGGATCTGAGAGCATCTAGAGGGATCTAGAAGCATCTAGTAGCATCTAGAAGAATCCAGAAGCATCTAGAAGGATTCAAGAGCATCTGGAGGCGTTTAGACGCTTCTAGACGTGTTTGAGAGCATCTTGAAGGATCTGAAAGCACCCAGAAGGATCCAGGAGCATGTATCAGTATCTAAATGGATCTGAAGGCATATGAAAGAATCTAGAAGCCTCTAGTGCTATCTGGAAGTAGCTTAATCGCTGGAATCCTGTCAGAATCGGTCTAGGAC</canonical_amplicon>
		<polymorphic_amplicon>TTTGGACTATTTGGAGATGTTCCGAGGGCTTGGAAAGCATCTAGATGAATCCAGGAGCTTCCAAAAGCGTCTAGAAGCATCTAGAAGGATCTGAGAGCAYCTAGAGGGATCTAGAAGCATCTAGTAGCATCTAGAAGAATCCAGAAGCATCTAGAAGGATTCAAGAGCATCTGGAGGCGTTTAGACGCTTCTAGACGTGTTTGAGAGCATCTTGAAGGATCTGAAAGCACCCAGAAGGATCCAGGAGCATGTATCAGTATCTAAATGGATCTGAAGGCATATGAAAGAATCTAGAAGCCTCTAGTGCTATCTGGAAGTAGCTTAATCGCTGGAATCCTGTCAGAATCGGTCTAGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33894</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>333695</contig_pos>
        <strand></strand>
        <context>agacgtgttt[G/A]agagcatctt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGAAGGATTCAAGAGCATCTGGAGGCGTTTAGACGCTTCTAGACGTGTTT</left_flank>
        <right_flank>AGAGCATCTTGAAGGATCTGAAAGCACCCAGAAGGATCCAGGAGCATGTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATTGCTCATCATAATAATGTGAACTCTTGACAACGAACATTTTTGTTGTCAAGCAGAGCAAGTTTATGAGCCCAGTCTATGTGTAGTTGTGTTGTCGTTCCTCTCTTCTTATGATGATTGATGGGAAGAACACGCGGACATGTATACATACAATGAGGGATGGAAATGTATCCGCGAGACACGAGACAAGACGATTTTAGCATATGAATAGGAGAGAGGAGATTTTGATGATGGGTCCAGGGAGAGAGGGGAACAACTTTACCTTGAAAAACGTTTTGGATCCTTGGAAGGATGTTTTGGACTATTTGGAGATGTTCCGAGGGCTTGGAAAGCATCTAGATGAATCCAGGAGCTTCCAAAAGCGTCTAGAAGCATCTAGAAGGATCTGAGAGCATCTAGAGGGATCTAGAAGCATCTAGTAGCATCTAGAAGAATCCAGAAGCATCTAGAAGGATTCAAGAGCATCTGGAGGCGTTTAGACGCTTCTAGACGTGTTTGAGAGCATCTTGAAGGATCTGAAAGCACCCAGAAGGATCCAGGAGCATGTATCAGTATCTAAATGGATCTGAAGGCATATGAAAGAATCTAGAAGCCTCTAGTGCTATCTGGAAGTAGCTTAATCGCTGGAATCCTGTCAGAATCGGTCTAGGACGATTTTATGCACTATTAGCGTTTCGATCCTTAGCCCAAGGTCTTGGAACCGCTCGCGACCTTTTCAACTTGTTGTTTGATCTTCCTTAGCTAATCCAAGCTAGCTCACTCAGCTAGATTGACGTTTCGGACCATATTCCAAAGGACCGCCAGTCTCTAGAGGCTCTACCGCAACACGCCGACACTCATTACGGCTAAATGATGCGTGATATTATTGGAGTGGCTACACAGCATCAGGCAGTTGCCGTGCCACACAATACACCGTTAATTAGGATGAATAGGAAGCAGGAGTCAACAATATAAAAATAGATCAAAACCCCTGTTGGGGAGGATTGTTTTGATAGGGT</canonical>
            <polymorphic>TTATTGCTCATCATAATAATGTGAACTCTTGACAACGAACATTTTTGTTGTCAAGCAGAGCAAGTTTATGAGCCCAGTCTATGTGTAGTTGTGTTGTCGTTCCTCTCTTCTTATGATGATTGATGGGAAGAACACGCGGACATGTATACATACAATGAGGGATGGAAATGTATCCGCGAGACACGAGACAAGACGATTTTAGCATATGAATAGGAGAGAGGAGATTTTGATGATGGGTCCAGGGAGAGAGGGGAACAACTTTACCTTGAAAAACGTTTTGGATCCTTGGAAGGATGTTTTGGACTATTTGGAGATGTTCCGAGGGCTTGGAAAGCATCTAGATGAATCCAGGAGCTTCCAAAAGCGTCTAGAAGCATCTAGAAGGATCTGAGAGCATCTAGAGGGATCTAGAAGCATCTAGTAGCATCTAGAAGAATCCAGAAGCATCTAGAAGGATTCAAGAGCATCTGGAGGCGTTTAGACGCTTCTAGACGTGTTTRAGAGCATCTTGAAGGATCTGAAAGCACCCAGAAGGATCCAGGAGCATGTATCAGTATCTAAATGGATCTGAAGGCATATGAAAGAATCTAGAAGCCTCTAGTGCTATCTGGAAGTAGCTTAATCGCTGGAATCCTGTCAGAATCGGTCTAGGACGATTTTATGCACTATTAGCGTTTCGATCCTTAGCCCAAGGTCTTGGAACCGCTCGCGACCTTTTCAACTTGTTGTTTGATCTTCCTTAGCTAATCCAAGCTAGCTCACTCAGCTAGATTGACGTTTCGGACCATATTCCAAAGGACCGCCAGTCTCTAGAGGCTCTACCGCAACACGCCGACACTCATTACGGCTAAATGATGCGTGATATTATTGGAGTGGCTACACAGCATCAGGCAGTTGCCGTGCCACACAATACACCGTTAATTAGGATGAATAGGAAGCAGGAGTCAACAATATAAAAATAGATCAAAACCCCTGTTGGGGAGGATTGTTTTGATAGGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGGACTATTTGGAGATGTTC</pcr_primer_p1>
		<pcr_primer_p2>GTCCTAGACCGATTCTGACA</pcr_primer_p2>
		<pcr_amplicon_size>357</pcr_amplicon_size>
		<canonical_amplicon>TTTGGACTATTTGGAGATGTTCCGAGGGCTTGGAAAGCATCTAGATGAATCCAGGAGCTTCCAAAAGCGTCTAGAAGCATCTAGAAGGATCTGAGAGCATCTAGAGGGATCTAGAAGCATCTAGTAGCATCTAGAAGAATCCAGAAGCATCTAGAAGGATTCAAGAGCATCTGGAGGCGTTTAGACGCTTCTAGACGTGTTTGAGAGCATCTTGAAGGATCTGAAAGCACCCAGAAGGATCCAGGAGCATGTATCAGTATCTAAATGGATCTGAAGGCATATGAAAGAATCTAGAAGCCTCTAGTGCTATCTGGAAGTAGCTTAATCGCTGGAATCCTGTCAGAATCGGTCTAGGAC</canonical_amplicon>
		<polymorphic_amplicon>TTTGGACTATTTGGAGATGTTCCGAGGGCTTGGAAAGCATCTAGATGAATCCAGGAGCTTCCAAAAGCGTCTAGAAGCATCTAGAAGGATCTGAGAGCATCTAGAGGGATCTAGAAGCATCTAGTAGCATCTAGAAGAATCCAGAAGCATCTAGAAGGATTCAAGAGCATCTGGAGGCGTTTAGACGCTTCTAGACGTGTTTRAGAGCATCTTGAAGGATCTGAAAGCACCCAGAAGGATCCAGGAGCATGTATCAGTATCTAAATGGATCTGAAGGCATATGAAAGAATCTAGAAGCCTCTAGTGCTATCTGGAAGTAGCTTAATCGCTGGAATCCTGTCAGAATCGGTCTAGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33895</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>333767</contig_pos>
        <strand></strand>
        <context>atggatctga[A/C]ggcatatgaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGCACCCAGAAGGATCCAGGAGCATGTATCAGTATCTAAATGGATCTGA</left_flank>
        <right_flank>GGCATATGAAAGAATCTAGAAGCCTCTAGTGCTATCTGGAAGTAGCTTAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCAGTCTATGTGTAGTTGTGTTGTCGTTCCTCTCTTCTTATGATGATTGATGGGAAGAACACGCGGACATGTATACATACAATGAGGGATGGAAATGTATCCGCGAGACACGAGACAAGACGATTTTAGCATATGAATAGGAGAGAGGAGATTTTGATGATGGGTCCAGGGAGAGAGGGGAACAACTTTACCTTGAAAAACGTTTTGGATCCTTGGAAGGATGTTTTGGACTATTTGGAGATGTTCCGAGGGCTTGGAAAGCATCTAGATGAATCCAGGAGCTTCCAAAAGCGTCTAGAAGCATCTAGAAGGATCTGAGAGCATCTAGAGGGATCTAGAAGCATCTAGTAGCATCTAGAAGAATCCAGAAGCATCTAGAAGGATTCAAGAGCATCTGGAGGCGTTTAGACGCTTCTAGACGTGTTTGAGAGCATCTTGAAGGATCTGAAAGCACCCAGAAGGATCCAGGAGCATGTATCAGTATCTAAATGGATCTGAAGGCATATGAAAGAATCTAGAAGCCTCTAGTGCTATCTGGAAGTAGCTTAATCGCTGGAATCCTGTCAGAATCGGTCTAGGACGATTTTATGCACTATTAGCGTTTCGATCCTTAGCCCAAGGTCTTGGAACCGCTCGCGACCTTTTCAACTTGTTGTTTGATCTTCCTTAGCTAATCCAAGCTAGCTCACTCAGCTAGATTGACGTTTCGGACCATATTCCAAAGGACCGCCAGTCTCTAGAGGCTCTACCGCAACACGCCGACACTCATTACGGCTAAATGATGCGTGATATTATTGGAGTGGCTACACAGCATCAGGCAGTTGCCGTGCCACACAATACACCGTTAATTAGGATGAATAGGAAGCAGGAGTCAACAATATAAAAATAGATCAAAACCCCTGTTGGGGAGGATTGTTTTGATAGGGTGGCACTCATTCTGGATGGGTATAGAGGGATGGAACCTTGGAATCTTGGAATCTAAGATCCTAGGGATCCTGG</canonical>
            <polymorphic>CCCAGTCTATGTGTAGTTGTGTTGTCGTTCCTCTCTTCTTATGATGATTGATGGGAAGAACACGCGGACATGTATACATACAATGAGGGATGGAAATGTATCCGCGAGACACGAGACAAGACGATTTTAGCATATGAATAGGAGAGAGGAGATTTTGATGATGGGTCCAGGGAGAGAGGGGAACAACTTTACCTTGAAAAACGTTTTGGATCCTTGGAAGGATGTTTTGGACTATTTGGAGATGTTCCGAGGGCTTGGAAAGCATCTAGATGAATCCAGGAGCTTCCAAAAGCGTCTAGAAGCATCTAGAAGGATCTGAGAGCATCTAGAGGGATCTAGAAGCATCTAGTAGCATCTAGAAGAATCCAGAAGCATCTAGAAGGATTCAAGAGCATCTGGAGGCGTTTAGACGCTTCTAGACGTGTTTGAGAGCATCTTGAAGGATCTGAAAGCACCCAGAAGGATCCAGGAGCATGTATCAGTATCTAAATGGATCTGAMGGCATATGAAAGAATCTAGAAGCCTCTAGTGCTATCTGGAAGTAGCTTAATCGCTGGAATCCTGTCAGAATCGGTCTAGGACGATTTTATGCACTATTAGCGTTTCGATCCTTAGCCCAAGGTCTTGGAACCGCTCGCGACCTTTTCAACTTGTTGTTTGATCTTCCTTAGCTAATCCAAGCTAGCTCACTCAGCTAGATTGACGTTTCGGACCATATTCCAAAGGACCGCCAGTCTCTAGAGGCTCTACCGCAACACGCCGACACTCATTACGGCTAAATGATGCGTGATATTATTGGAGTGGCTACACAGCATCAGGCAGTTGCCGTGCCACACAATACACCGTTAATTAGGATGAATAGGAAGCAGGAGTCAACAATATAAAAATAGATCAAAACCCCTGTTGGGGAGGATTGTTTTGATAGGGTGGCACTCATTCTGGATGGGTATAGAGGGATGGAACCTTGGAATCTTGGAATCTAAGATCCTAGGGATCCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGGACTATTTGGAGATGTTC</pcr_primer_p1>
		<pcr_primer_p2>GTCCTAGACCGATTCTGACA</pcr_primer_p2>
		<pcr_amplicon_size>357</pcr_amplicon_size>
		<canonical_amplicon>TTTGGACTATTTGGAGATGTTCCGAGGGCTTGGAAAGCATCTAGATGAATCCAGGAGCTTCCAAAAGCGTCTAGAAGCATCTAGAAGGATCTGAGAGCATCTAGAGGGATCTAGAAGCATCTAGTAGCATCTAGAAGAATCCAGAAGCATCTAGAAGGATTCAAGAGCATCTGGAGGCGTTTAGACGCTTCTAGACGTGTTTGAGAGCATCTTGAAGGATCTGAAAGCACCCAGAAGGATCCAGGAGCATGTATCAGTATCTAAATGGATCTGAAGGCATATGAAAGAATCTAGAAGCCTCTAGTGCTATCTGGAAGTAGCTTAATCGCTGGAATCCTGTCAGAATCGGTCTAGGAC</canonical_amplicon>
		<polymorphic_amplicon>TTTGGACTATTTGGAGATGTTCCGAGGGCTTGGAAAGCATCTAGATGAATCCAGGAGCTTCCAAAAGCGTCTAGAAGCATCTAGAAGGATCTGAGAGCATCTAGAGGGATCTAGAAGCATCTAGTAGCATCTAGAAGAATCCAGAAGCATCTAGAAGGATTCAAGAGCATCTGGAGGCGTTTAGACGCTTCTAGACGTGTTTGAGAGCATCTTGAAGGATCTGAAAGCACCCAGAAGGATCCAGGAGCATGTATCAGTATCTAAATGGATCTGAMGGCATATGAAAGAATCTAGAAGCCTCTAGTGCTATCTGGAAGTAGCTTAATCGCTGGAATCCTGTCAGAATCGGTCTAGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33896</snp_id>
        <super_contig>c008701031.Contig1</super_contig>
        <contig_pos>336225</contig_pos>
        <strand>+</strand>
        <context>CGCCTATACG[A/G]TCTTCCCATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGACGCATAAGAGCCGTGATCCTTTAAAACCATCAGAATCGCCTATACG</left_flank>
        <right_flank>TCTTCCCATTCATGATCATCGCGTGTCAGGATCTTCTCCTTAGTCTCAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCTAGGTGAGTTTTTTGCTTTAATTGGGGGGAGGGGGTGGGTCTAATTAATTAACTATACTAACTATCTTTTCAGCCTCATCTGAGCTGGAAATGCTCGACGCATCGTATAACAATTTGGACCAGCTTCCCACAGAGTGGCTTCAAAACTGCGACAAGCGGATTGCTCATCTTCATCTGGAGCATAATCGGATACAGGAGATTCCAGGAGGTGTTCTGTCGAATGCCACAAATTTGCAGACGGTAAGAGCGACTTTCTGTGCTTTTTGGCTTTGTACATACTTCCTTGAACTCCTTGATCCTTTAAAATCGTAAGATCGGTAGAATCATAATTGCCTTGTTCCTTTAAAACTGTCAGAATCGTCTAAGATCCTTAGATCTCTGGCTCTTTAGATTCTTGGAATCTAGACAACTAGGATCCTTGTAATCCTAAGCTCCGGACACACAGACAGACGCATAAGAGCCGTGATCCTTTAAAACCATCAGAATCGCCTATACGGTCTTCCCATTCATGATCATCGCGTGTCAGGATCTTCTCCTTAGTCTCAATTTGTGATTTTTGGTCTTGATGAATCTTTAAGATGGTCAGAACCGTCCAGGATCCTTGAAATCTTAGAATCGAGTCTTGGAACTTGACGCTTTCAGATCCTCAGATCAGATCAGATGGAATCTAACATCCTCAGTTCCAGGAGTCTACGATCCCTCTAATCTTAAGCTCCCGGACACATAGACAGACCCATGAGAGCCTTCAGAATCGTCTTCGATCGCGTGTCAGTAGACAAACATGTATATAGTTCATTGACCTTCTTCTTGAGTATCACACTTTTCTATTCATGATACACTCCAGGGGTGTCATAATGGAGTACTGTACTTGATAGGGTTCATTATCTTCTCTTGGTGGCCAAACGAACACCCATAGAACTTACTAGACTAAACACAGGTGTCATCGTTTTTGGAAAGTTTTGTTAATAACGGGGTTGTCATGGACCATAAGTGACCA</canonical>
            <polymorphic>TGCTAGGTGAGTTTTTTGCTTTAATTGGGGGGAGGGGGTGGGTCTAATTAATTAACTATACTAACTATCTTTTCAGCCTCATCTGAGCTGGAAATGCTCGACGCATCGTATAACAATTTGGACCAGCTTCCCACAGAGTGGCTTCAAAACTGCGACAAGCGGATTGCTCATCTTCATCTGGAGCATAATCGGATACAGGAGATTCCAGGAGGTGTTCTGTCGAATGCCACAAATTTGCAGACGGTAAGAGCGACTTTCTGTGCTTTTTGGCTTTGTACATACTTCCTTGAACTCCTTGATCCTTTAAAATCGTAAGATCGGTAGAATCATAATTGCCTTGTTCCTTTAAAACTGTCAGAATCGTCTAAGATCCTTAGATCTCTGGCTCTTTAGATTCTTGGAATCTAGACAACTAGGATCCTTGTAATCCTAAGCTCCGGACACACAGACAGACGCATAAGAGCCGTGATCCTTTAAAACCATCAGAATCGCCTATACGRTCTTCCCATTCATGATCATCGCGTGTCAGGATCTTCTCCTTAGTCTCAATTTGTGATTTTTGGTCTTGATGAATCTTTAAGATGGTCAGAACCGTCCAGGATCCTTGAAATCTTAGAATCGAGTCTTGGAACTTGACGCTTTCAGATCCTCAGATCAGATCAGATGGAATCTAACATCCTCAGTTCCAGGAGTCTACGATCCCTCTAATCTTAAGCTCCCGGACACATAGACAGACCCATGAGAGCCTTCAGAATCGTCTTCGATCGCGTGTCAGTAGACAAACATGTATATAGTTCATTGACCTTCTTCTTGAGTATCACACTTTTCTATTCATGATACACTCCAGGGGTGTCATAATGGAGTACTGTACTTGATAGGGTTCATTATCTTCTCTTGGTGGCCAAACGAACACCCATAGAACTTACTAGACTAAACACAGGTGTCATCGTTTTTGGAAAGTTTTGTTAATAACGGGGTTGTCATGGACCATAAGTGACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>274 243 146 133 110 94</canonical_bands>
                <polymorphic_bands>274 243 240 133 110</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCTCTGGCTCTTTAGATTCTT</pcr_primer_p1>
		<pcr_primer_p2>CAAGACTCGATTCTAAGATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GATCTCTGGCTCTTTAGATTCTTGGAATCTAGACAACTAGGATCCTTGTAATCCTAAGCTCCGGACACACAGACAGACGCATAAGAGCCGTGATCCTTTAAAACCATCAGAATCGCCTATACGGTCTTCCCATTCATGATCATCGCGTGTCAGGATCTTCTCCTTAGTCTCAATTTGTGATTTTTGGTCTTGATGAATCTTTAAGATGGTCAGAACCGTCCAGGATCCTTGAAATCTTAGAATCGAGTCTTG</canonical_amplicon>
		<polymorphic_amplicon>GATCTCTGGCTCTTTAGATTCTTGGAATCTAGACAACTAGGATCCTTGTAATCCTAAGCTCCGGACACACAGACAGACGCATAAGAGCCGTGATCCTTTAAAACCATCAGAATCGCCTATACGRTCTTCCCATTCATGATCATCGCGTGTCAGGATCTTCTCCTTAGTCTCAATTTGTGATTTTTGGTCTTGATGAATCTTTAAGATGGTCAGAACCGTCCAGGATCCTTGAAATCTTAGAATCGAGTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33899</snp_id>
        <super_contig>c008701043.Contig2</super_contig>
        <contig_pos>7881</contig_pos>
        <strand>+</strand>
        <context>ATGTTGAAAA[C/T]TTTAAAAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTTGAAATTTCAAAATTTTGATCTTTGAAATTGTGGAATGTTGAAAA</left_flank>
        <right_flank>TTTAAAAATTGGGAATATCTAGAGATTCCGAAAATTCTGGTCCGCCCGCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATATTTCATATACCTGAGAAGTCCATAAACATGCAATATATAAAAAATCAGCTAGAAAAAACAAGTTTGATTTTTTCTGTACAGTGGATAAAAAGCCTGAAGTTGAGTTCTGTAGAGAACGCGTATTAACATTTAGTTTTGTGATGATTTTTAGCATTAATTTCTGAGCCGCTTTTTAGCATGAAAATCTGCTTTAAGTCCAAAAATATACAACCAATTTTCAACAATAATAATAAAAAATAGCCGAAAGGCTTGATAAACAAACAAATATATTCCAAATCTTAATGAATTTCAAAAATAGAGCAAAAGTGAGTTTAACGGAATTAGTAATTTTGAAAATTCTAGTAAATTATAGAATTTCCGACCTGATATTCAAACCTAAGCTTTTCGCTATGAAATTCTAACTGGGTTTCCAGAAAGAAAAGTCAGTAAGTTCAAAAATTCCAGAAATTTTGAAATTTCAAAATTTTGATCTTTGAAATTGTGGAATGTTGAAAACTTTAAAAATTGGGAATATCTAGAGATTCCGAAAATTCTGGTCCGCCCGCCTTTGTAGGACCAGTTCTTATGACAACTATTAATTTAAAGTGCTCAAAATTAGTAAACTACTTTAAACAAAACATATATACAAACATTTTTATTCTCTTTATAGAGTGCCACATCGACAAGAATGTCATCTTTTTGGAAGCAGATAGGGATATCGTAGTAATGGATCGACTGACACATGTTCCACCGCCGTGCCCAGCTTCAATTGTGGTGTCAAGACTAGGTCCAATCCCTGAAGAACCCGATCTGGAAGGCGACGATTGGTTAGTTTGCTGATTTCATTTCTCATCATTATTTTTGATTACAGCAATTTCTACGAGATCCTCAAAGATCAGAAAATGATCGATGCTGCGCCAGTTTGTAAGACCTGGTTCGATTATCAAAGGTAAGCTTGGAGGACAATTATGGTTTCATAAATTATTTTAAAAAACGATCAAATCTTCATAAATTTTA</canonical>
            <polymorphic>TATATTTCATATACCTGAGAAGTCCATAAACATGCAATATATAAAAAATCAGCTAGAAAAAACAAGTTTGATTTTTTCTGTACAGTGGATAAAAAGCCTGAAGTTGAGTTCTGTAGAGAACGCGTATTAACATTTAGTTTTGTGATGATTTTTAGCATTAATTTCTGAGCCGCTTTTTAGCATGAAAATCTGCTTTAAGTCCAAAAATATACAACCAATTTTCAACAATAATAATAAAAAATAGCCGAAAGGCTTGATAAACAAACAAATATATTCCAAATCTTAATGAATTTCAAAAATAGAGCAAAAGTGAGTTTAACGGAATTAGTAATTTTGAAAATTCTAGTAAATTATAGAATTTCCGACCTGATATTCAAACCTAAGCTTTTCGCTATGAAATTCTAACTGGGTTTCCAGAAAGAAAAGTCAGTAAGTTCAAAAATTCCAGAAATTTTGAAATTTCAAAATTTTGATCTTTGAAATTGTGGAATGTTGAAAAYTTTAAAAATTGGGAATATCTAGAGATTCCGAAAATTCTGGTCCGCCCGCCTTTGTAGGACCAGTTCTTATGACAACTATTAATTTAAAGTGCTCAAAATTAGTAAACTACTTTAAACAAAACATATATACAAACATTTTTATTCTCTTTATAGAGTGCCACATCGACAAGAATGTCATCTTTTTGGAAGCAGATAGGGATATCGTAGTAATGGATCGACTGACACATGTTCCACCGCCGTGCCCAGCTTCAATTGTGGTGTCAAGACTAGGTCCAATCCCTGAAGAACCCGATCTGGAAGGCGACGATTGGTTAGTTTGCTGATTTCATTTCTCATCATTATTTTTGATTACAGCAATTTCTACGAGATCCTCAAAGATCAGAAAATGATCGATGCTGCGCCAGTTTGTAAGACCTGGTTCGATTATCAAAGGTAAGCTTGGAGGACAATTATGGTTTCATAAATTATTTTAAAAAACGATCAAATCTTCATAAATTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAGAAAGAAAAGTCAGTAA</pcr_primer_p1>
		<pcr_primer_p2>TGGCACTCTATAAAGAGAATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAGAAAGAAAAGTCAGTAAGTTCAAAAATTCCAGAAATTTTGAAATTTCAAAATTTTGATCTTTGAAATTGTGGAATGTTGAAAACTTTAAAAATTGGGAATATCTAGAGATTCCGAAAATTCTGGTCCGCCCGCCTTTGTAGGACCAGTTCTTATGACAACTATTAATTTAAAGTGCTCAAAATTAGTAAACTACTTTAAACAAAACATATATACAAACATTTTTATTCTCTTTATAGAGTGCCA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAGAAAGAAAAGTCAGTAAGTTCAAAAATTCCAGAAATTTTGAAATTTCAAAATTTTGATCTTTGAAATTGTGGAATGTTGAAAAYTTTAAAAATTGGGAATATCTAGAGATTCCGAAAATTCTGGTCCGCCCGCCTTTGTAGGACCAGTTCTTATGACAACTATTAATTTAAAGTGCTCAAAATTAGTAAACTACTTTAAACAAAACATATATACAAACATTTTTATTCTCTTTATAGAGTGCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33900</snp_id>
        <super_contig>c008701043.Contig2</super_contig>
        <contig_pos>7912</contig_pos>
        <strand>+</strand>
        <context>AGAGATTCCG[A/G]AAATTCTGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTGTGGAATGTTGAAAACTTTAAAAATTGGGAATATCTAGAGATTCCG</left_flank>
        <right_flank>AAATTCTGGTCCGCCCGCCTTTGTAGGACCAGTTCTTATGACAACTATTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGCAATATATAAAAAATCAGCTAGAAAAAACAAGTTTGATTTTTTCTGTACAGTGGATAAAAAGCCTGAAGTTGAGTTCTGTAGAGAACGCGTATTAACATTTAGTTTTGTGATGATTTTTAGCATTAATTTCTGAGCCGCTTTTTAGCATGAAAATCTGCTTTAAGTCCAAAAATATACAACCAATTTTCAACAATAATAATAAAAAATAGCCGAAAGGCTTGATAAACAAACAAATATATTCCAAATCTTAATGAATTTCAAAAATAGAGCAAAAGTGAGTTTAACGGAATTAGTAATTTTGAAAATTCTAGTAAATTATAGAATTTCCGACCTGATATTCAAACCTAAGCTTTTCGCTATGAAATTCTAACTGGGTTTCCAGAAAGAAAAGTCAGTAAGTTCAAAAATTCCAGAAATTTTGAAATTTCAAAATTTTGATCTTTGAAATTGTGGAATGTTGAAAACTTTAAAAATTGGGAATATCTAGAGATTCCGAAAATTCTGGTCCGCCCGCCTTTGTAGGACCAGTTCTTATGACAACTATTAATTTAAAGTGCTCAAAATTAGTAAACTACTTTAAACAAAACATATATACAAACATTTTTATTCTCTTTATAGAGTGCCACATCGACAAGAATGTCATCTTTTTGGAAGCAGATAGGGATATCGTAGTAATGGATCGACTGACACATGTTCCACCGCCGTGCCCAGCTTCAATTGTGGTGTCAAGACTAGGTCCAATCCCTGAAGAACCCGATCTGGAAGGCGACGATTGGTTAGTTTGCTGATTTCATTTCTCATCATTATTTTTGATTACAGCAATTTCTACGAGATCCTCAAAGATCAGAAAATGATCGATGCTGCGCCAGTTTGTAAGACCTGGTTCGATTATCAAAGGTAAGCTTGGAGGACAATTATGGTTTCATAAATTATTTTAAAAAACGATCAAATCTTCATAAATTTTATCAAAAACTGGGAATAACTTCTTGTCGGGAA</canonical>
            <polymorphic>ATGCAATATATAAAAAATCAGCTAGAAAAAACAAGTTTGATTTTTTCTGTACAGTGGATAAAAAGCCTGAAGTTGAGTTCTGTAGAGAACGCGTATTAACATTTAGTTTTGTGATGATTTTTAGCATTAATTTCTGAGCCGCTTTTTAGCATGAAAATCTGCTTTAAGTCCAAAAATATACAACCAATTTTCAACAATAATAATAAAAAATAGCCGAAAGGCTTGATAAACAAACAAATATATTCCAAATCTTAATGAATTTCAAAAATAGAGCAAAAGTGAGTTTAACGGAATTAGTAATTTTGAAAATTCTAGTAAATTATAGAATTTCCGACCTGATATTCAAACCTAAGCTTTTCGCTATGAAATTCTAACTGGGTTTCCAGAAAGAAAAGTCAGTAAGTTCAAAAATTCCAGAAATTTTGAAATTTCAAAATTTTGATCTTTGAAATTGTGGAATGTTGAAAACTTTAAAAATTGGGAATATCTAGAGATTCCGRAAATTCTGGTCCGCCCGCCTTTGTAGGACCAGTTCTTATGACAACTATTAATTTAAAGTGCTCAAAATTAGTAAACTACTTTAAACAAAACATATATACAAACATTTTTATTCTCTTTATAGAGTGCCACATCGACAAGAATGTCATCTTTTTGGAAGCAGATAGGGATATCGTAGTAATGGATCGACTGACACATGTTCCACCGCCGTGCCCAGCTTCAATTGTGGTGTCAAGACTAGGTCCAATCCCTGAAGAACCCGATCTGGAAGGCGACGATTGGTTAGTTTGCTGATTTCATTTCTCATCATTATTTTTGATTACAGCAATTTCTACGAGATCCTCAAAGATCAGAAAATGATCGATGCTGCGCCAGTTTGTAAGACCTGGTTCGATTATCAAAGGTAAGCTTGGAGGACAATTATGGTTTCATAAATTATTTTAAAAAACGATCAAATCTTCATAAATTTTATCAAAAACTGGGAATAACTTCTTGTCGGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>352 197 166 150 135</canonical_bands>
                <polymorphic_bands>518 197 150 135</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTTTGATCTTTGAAATTGTG</pcr_primer_p1>
		<pcr_primer_p2>TCCATTACTACGATATCCCTATCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTTTGATCTTTGAAATTGTGGAATGTTGAAAACTTTAAAAATTGGGAATATCTAGAGATTCCGAAAATTCTGGTCCGCCCGCCTTTGTAGGACCAGTTCTTATGACAACTATTAATTTAAAGTGCTCAAAATTAGTAAACTACTTTAAACAAAACATATATACAAACATTTTTATTCTCTTTATAGAGTGCCACATCGACAAGAATGTCATCTTTTTGGAAGCAGATAGGGATATCGTAGTAATGGA</canonical_amplicon>
		<polymorphic_amplicon>AAATTTTGATCTTTGAAATTGTGGAATGTTGAAAACTTTAAAAATTGGGAATATCTAGAGATTCCGRAAATTCTGGTCCGCCCGCCTTTGTAGGACCAGTTCTTATGACAACTATTAATTTAAAGTGCTCAAAATTAGTAAACTACTTTAAACAAAACATATATACAAACATTTTTATTCTCTTTATAGAGTGCCACATCGACAAGAATGTCATCTTTTTGGAAGCAGATAGGGATATCGTAGTAATGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33901</snp_id>
        <super_contig>c008701043.Contig2</super_contig>
        <contig_pos>69427</contig_pos>
        <strand></strand>
        <context>ggagggtcct[G/A]ragatattga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGAAAATTCGACAAAAAATGTACATGATTTTGAAATTTCTGGAGGGTCCT</left_flank>
        <right_flank>GAGATATTGATCGGCCAGATGTAGGTCTTTTTGGTGGTACACTTATACGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAATACCTATTTCTGGCCGGTCAATATCTTTAGGATCCCCTGGAAATTTTGAAATCTTGGTCATTTTTTGTCGAATTTTCGATTTTAAACTGAAAATTACTTTCAGTTTCTCGCTGTTTCGGTACACTTTTATAAGTAACTCAAAGAGTTTTCATTATTTGTCTTTTATACTTTCCAAATTATCTTTTTCCTTATTTTTTGCGTATTTTTGTAAAAGTGACCCAATTTGTCGCGCAACTCAAACTATTCAAAGAGAAAGGTCATGGAACATACATCATATGATGTTGGGAAGCTAATTAGGTATTGGTAGCGCAGGGCCACTTTTCTAAAATTAGGAAAAATTGGAAAAAATGATAATTTGGAAAGTCTACAAATCATTAAAATTATTTGAGATACTTATGAATGTATCAAAAAGCACGAAGCTGAAATTTATTTTCATTTTAAAAGAGAAAATTCGACAAAAAATGTACATGATTTTGAAATTTCTGGAGGGTCCTGGAGATATTGATCGGCCAGATGTAGGTCTTTTTGGTGGTACACTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTGGGGTTATTTTACATCCTGAATCGAATGGAGTTTACAGAATTTAGATATCTCTTCTCGTTCTTCCGGAACCCCCAAAATAGAGGGGGGGGGGGCGTCCTAAAGATATGACCGCACTAAAGACCGCTGTACGATAGTTAGTCTTCTTAGGGTGTGCTGAATGAAAAAATTCTCAAAAGGAACCTTTCTTACTTGTGGTCTAGTTTGAATAAACAATGCTCTCGAGAAGGGCAAGGATAAAAACTATTGATCCACTCTGATAATTTTAAGTAACGTTTGAAGACAAATTGGCCTGGACAAAATTTAAAGGAGGCCAAACACCAAAAAAAAATTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTGAAGACCGGCAGTTCAGGGGTACAGCGCCGCTACCGGCTGAGCTA</canonical>
            <polymorphic>TAAAATACCTATTTCTGGCCGGTCAATATCTTTAGGATCCCCTGGAAATTTTGAAATCTTGGTCATTTTTTGTCGAATTTTCGATTTTAAACTGAAAATTACTTTCAGTTTCTCGCTGTTTCGGTACACTTTTATAAGTAACTCAAAGAGTTTTCATTATTTGTCTTTTATACTTTCCAAATTATCTTTTTCCTTATTTTTTGCGTATTTTTGTAAAAGTGACCCAATTTGTCGCGCAACTCAAACTATTCAAAGAGAAAGGTCATGGAACATACATCATATGATGTTGGGAAGCTAATTAGGTATTGGTAGCGCAGGGCCACTTTTCTAAAATTAGGAAAAATTGGAAAAAATGATAATTTGGAAAGTCTACAAATCATTAAAATTATTTGAGATACTTATGAATGTATCAAAAAGCACGAAGCTGAAATTTATTTTCATTTTAAAAGAGAAAATTCGACAAAAAATGTACATGATTTTGAAATTTCTGGAGGGTCCTRGAGATATTGATCGGCCAGATGTAGGTCTTTTTGGTGGTACACTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTGGGGTTATTTTACATCCTGAATCGAATGGAGTTTACAGAATTTAGATATCTCTTCTCGTTCTTCCGGAACCCCCAAAATAGAGGGGGGGGGGGCGTCCTAAAGATATGACCGCACTAAAGACCGCTGTACGATAGTTAGTCTTCTTAGGGTGTGCTGAATGAAAAAATTCTCAAAAGGAACCTTTCTTACTTGTGGTCTAGTTTGAATAAACAATGCTCTCGAGAAGGGCAAGGATAAAAACTATTGATCCACTCTGATAATTTTAAGTAACGTTTGAAGACAAATTGGCCTGGACAAAATTTAAAGGAGGCCAAACACCAAAAAAAAATTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTGAAGACCGGCAGTTCAGGGGTACAGCGCCGCTACCGGCTGAGCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>456 292 128 82 42</canonical_bands>
                <polymorphic_bands>538 292 128 42</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>456 292 128 82 42</canonical_bands>
                <polymorphic_bands>538 292 128 42</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCATCCGATTTAGGATAGAATA</pcr_primer_p1>
		<pcr_primer_p2>CTATCGTACAGCGGTCTTTAGT</pcr_primer_p2>
		<pcr_amplicon_size>742</pcr_amplicon_size>
		<canonical_amplicon>TGGAGATATTGATCGGCCAGATGTAGGTCTTTTTGGTGGTACACTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTGGGGTTATTTTACATCCTGAATCGAATGGAGTTTACAGAATTTAGATATCTCTTCTCGTTCTTCCGGAACCCCCAAAATAGAGGGGGGGGGGGCGTCCTAAAGATATGACCGCACTAAAGACCGCTGTACGATAG</canonical_amplicon>
		<polymorphic_amplicon>TRGAGATATTGATCGGCCAGATGTAGGTCTTTTTGGTGGTACACTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTGGGGTTATTTTACATCCTGAATCGAATGGAGTTTACAGAATTTAGATATCTCTTCTCGTTCTTCCGGAACCCCCAAAATAGAGGGGGGGGGGGCGTCCTAAAGATATGACCGCACTAAAGACCGCTGTACGATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33902</snp_id>
        <super_contig>c008701043.Contig2</super_contig>
        <contig_pos>69428</contig_pos>
        <strand></strand>
        <context>gagggtcctr[G/A]agatattgat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAAAATTCGACAAAAAATGTACATGATTTTGAAATTTCTGGAGGGTCCTG</left_flank>
        <right_flank>AGATATTGATCGGCCAGATGTAGGTCTTTTTGGTGGTACACTTATACGGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATACCTATTTCTGGCCGGTCAATATCTTTAGGATCCCCTGGAAATTTTGAAATCTTGGTCATTTTTTGTCGAATTTTCGATTTTAAACTGAAAATTACTTTCAGTTTCTCGCTGTTTCGGTACACTTTTATAAGTAACTCAAAGAGTTTTCATTATTTGTCTTTTATACTTTCCAAATTATCTTTTTCCTTATTTTTTGCGTATTTTTGTAAAAGTGACCCAATTTGTCGCGCAACTCAAACTATTCAAAGAGAAAGGTCATGGAACATACATCATATGATGTTGGGAAGCTAATTAGGTATTGGTAGCGCAGGGCCACTTTTCTAAAATTAGGAAAAATTGGAAAAAATGATAATTTGGAAAGTCTACAAATCATTAAAATTATTTGAGATACTTATGAATGTATCAAAAAGCACGAAGCTGAAATTTATTTTCATTTTAAAAGAGAAAATTCGACAAAAAATGTACATGATTTTGAAATTTCTGGAGGGTCCTGGAGATATTGATCGGCCAGATGTAGGTCTTTTTGGTGGTACACTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTGGGGTTATTTTACATCCTGAATCGAATGGAGTTTACAGAATTTAGATATCTCTTCTCGTTCTTCCGGAACCCCCAAAATAGAGGGGGGGGGGGCGTCCTAAAGATATGACCGCACTAAAGACCGCTGTACGATAGTTAGTCTTCTTAGGGTGTGCTGAATGAAAAAATTCTCAAAAGGAACCTTTCTTACTTGTGGTCTAGTTTGAATAAACAATGCTCTCGAGAAGGGCAAGGATAAAAACTATTGATCCACTCTGATAATTTTAAGTAACGTTTGAAGACAAATTGGCCTGGACAAAATTTAAAGGAGGCCAAACACCAAAAAAAAATTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTGAAGACCGGCAGTTCAGGGGTACAGCGCCGCTACCGGCTGAGCTAC</canonical>
            <polymorphic>AAAATACCTATTTCTGGCCGGTCAATATCTTTAGGATCCCCTGGAAATTTTGAAATCTTGGTCATTTTTTGTCGAATTTTCGATTTTAAACTGAAAATTACTTTCAGTTTCTCGCTGTTTCGGTACACTTTTATAAGTAACTCAAAGAGTTTTCATTATTTGTCTTTTATACTTTCCAAATTATCTTTTTCCTTATTTTTTGCGTATTTTTGTAAAAGTGACCCAATTTGTCGCGCAACTCAAACTATTCAAAGAGAAAGGTCATGGAACATACATCATATGATGTTGGGAAGCTAATTAGGTATTGGTAGCGCAGGGCCACTTTTCTAAAATTAGGAAAAATTGGAAAAAATGATAATTTGGAAAGTCTACAAATCATTAAAATTATTTGAGATACTTATGAATGTATCAAAAAGCACGAAGCTGAAATTTATTTTCATTTTAAAAGAGAAAATTCGACAAAAAATGTACATGATTTTGAAATTTCTGGAGGGTCCTGRAGATATTGATCGGCCAGATGTAGGTCTTTTTGGTGGTACACTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTGGGGTTATTTTACATCCTGAATCGAATGGAGTTTACAGAATTTAGATATCTCTTCTCGTTCTTCCGGAACCCCCAAAATAGAGGGGGGGGGGGCGTCCTAAAGATATGACCGCACTAAAGACCGCTGTACGATAGTTAGTCTTCTTAGGGTGTGCTGAATGAAAAAATTCTCAAAAGGAACCTTTCTTACTTGTGGTCTAGTTTGAATAAACAATGCTCTCGAGAAGGGCAAGGATAAAAACTATTGATCCACTCTGATAATTTTAAGTAACGTTTGAAGACAAATTGGCCTGGACAAAATTTAAAGGAGGCCAAACACCAAAAAAAAATTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTGAAGACCGGCAGTTCAGGGGTACAGCGCCGCTACCGGCTGAGCTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>456 292 129 82 41</canonical_bands>
                <polymorphic_bands>538 292 129 41</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>456 292 129 82 41</canonical_bands>
                <polymorphic_bands>538 292 129 41</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCATCCGATTTAGGATAGAATA</pcr_primer_p1>
		<pcr_primer_p2>CTATCGTACAGCGGTCTTTAGT</pcr_primer_p2>
		<pcr_amplicon_size>742</pcr_amplicon_size>
		<canonical_amplicon>GGAGATATTGATCGGCCAGATGTAGGTCTTTTTGGTGGTACACTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTGGGGTTATTTTACATCCTGAATCGAATGGAGTTTACAGAATTTAGATATCTCTTCTCGTTCTTCCGGAACCCCCAAAATAGAGGGGGGGGGGGCGTCCTAAAGATATGACCGCACTAAAGACCGCTGTACGATAG</canonical_amplicon>
		<polymorphic_amplicon>GRAGATATTGATCGGCCAGATGTAGGTCTTTTTGGTGGTACACTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTGGGGTTATTTTACATCCTGAATCGAATGGAGTTTACAGAATTTAGATATCTCTTCTCGTTCTTCCGGAACCCCCAAAATAGAGGGGGGGGGGGCGTCCTAAAGATATGACCGCACTAAAGACCGCTGTACGATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33903</snp_id>
        <super_contig>c008701043.Contig2</super_contig>
        <contig_pos>69484</contig_pos>
        <strand></strand>
        <context>acggaaagtg[G/T]taaaatcatg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGATCGGCCAGATGTAGGTCTTTTTGGTGGTACACTTATACGGAAAGTG</left_flank>
        <right_flank>TAAAATCATGAAAATTTGTCCCCTGGGGTTATTTTACATCCTGAATCGAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGGTCATTTTTTGTCGAATTTTCGATTTTAAACTGAAAATTACTTTCAGTTTCTCGCTGTTTCGGTACACTTTTATAAGTAACTCAAAGAGTTTTCATTATTTGTCTTTTATACTTTCCAAATTATCTTTTTCCTTATTTTTTGCGTATTTTTGTAAAAGTGACCCAATTTGTCGCGCAACTCAAACTATTCAAAGAGAAAGGTCATGGAACATACATCATATGATGTTGGGAAGCTAATTAGGTATTGGTAGCGCAGGGCCACTTTTCTAAAATTAGGAAAAATTGGAAAAAATGATAATTTGGAAAGTCTACAAATCATTAAAATTATTTGAGATACTTATGAATGTATCAAAAAGCACGAAGCTGAAATTTATTTTCATTTTAAAAGAGAAAATTCGACAAAAAATGTACATGATTTTGAAATTTCTGGAGGGTCCTGGAGATATTGATCGGCCAGATGTAGGTCTTTTTGGTGGTACACTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTGGGGTTATTTTACATCCTGAATCGAATGGAGTTTACAGAATTTAGATATCTCTTCTCGTTCTTCCGGAACCCCCAAAATAGAGGGGGGGGGGGCGTCCTAAAGATATGACCGCACTAAAGACCGCTGTACGATAGTTAGTCTTCTTAGGGTGTGCTGAATGAAAAAATTCTCAAAAGGAACCTTTCTTACTTGTGGTCTAGTTTGAATAAACAATGCTCTCGAGAAGGGCAAGGATAAAAACTATTGATCCACTCTGATAATTTTAAGTAACGTTTGAAGACAAATTGGCCTGGACAAAATTTAAAGGAGGCCAAACACCAAAAAAAAATTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTGAAGACCGGCAGTTCAGGGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCACTGAGAGCTTAAAATTTGGCTCAAAAATACAGAATTTTTGA</canonical>
            <polymorphic>CTTGGTCATTTTTTGTCGAATTTTCGATTTTAAACTGAAAATTACTTTCAGTTTCTCGCTGTTTCGGTACACTTTTATAAGTAACTCAAAGAGTTTTCATTATTTGTCTTTTATACTTTCCAAATTATCTTTTTCCTTATTTTTTGCGTATTTTTGTAAAAGTGACCCAATTTGTCGCGCAACTCAAACTATTCAAAGAGAAAGGTCATGGAACATACATCATATGATGTTGGGAAGCTAATTAGGTATTGGTAGCGCAGGGCCACTTTTCTAAAATTAGGAAAAATTGGAAAAAATGATAATTTGGAAAGTCTACAAATCATTAAAATTATTTGAGATACTTATGAATGTATCAAAAAGCACGAAGCTGAAATTTATTTTCATTTTAAAAGAGAAAATTCGACAAAAAATGTACATGATTTTGAAATTTCTGGAGGGTCCTGGAGATATTGATCGGCCAGATGTAGGTCTTTTTGGTGGTACACTTATACGGAAAGTGKTAAAATCATGAAAATTTGTCCCCTGGGGTTATTTTACATCCTGAATCGAATGGAGTTTACAGAATTTAGATATCTCTTCTCGTTCTTCCGGAACCCCCAAAATAGAGGGGGGGGGGGCGTCCTAAAGATATGACCGCACTAAAGACCGCTGTACGATAGTTAGTCTTCTTAGGGTGTGCTGAATGAAAAAATTCTCAAAAGGAACCTTTCTTACTTGTGGTCTAGTTTGAATAAACAATGCTCTCGAGAAGGGCAAGGATAAAAACTATTGATCCACTCTGATAATTTTAAGTAACGTTTGAAGACAAATTGGCCTGGACAAAATTTAAAGGAGGCCAAACACCAAAAAAAAATTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTGAAGACCGGCAGTTCAGGGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCACTGAGAGCTTAAAATTTGGCTCAAAAATACAGAATTTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCATCCGATTTAGGATAGAATA</pcr_primer_p1>
		<pcr_primer_p2>CTATCGTACAGCGGTCTTTAGT</pcr_primer_p2>
		<pcr_amplicon_size>742</pcr_amplicon_size>
		<canonical_amplicon>GGTAAAATCATGAAAATTTGTCCCCTGGGGTTATTTTACATCCTGAATCGAATGGAGTTTACAGAATTTAGATATCTCTTCTCGTTCTTCCGGAACCCCCAAAATAGAGGGGGGGGGGGCGTCCTAAAGATATGACCGCACTAAAGACCGCTGTACGATAG</canonical_amplicon>
		<polymorphic_amplicon>GKTAAAATCATGAAAATTTGTCCCCTGGGGTTATTTTACATCCTGAATCGAATGGAGTTTACAGAATTTAGATATCTCTTCTCGTTCTTCCGGAACCCCCAAAATAGAGGGGGGGGGGGCGTCCTAAAGATATGACCGCACTAAAGACCGCTGTACGATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33904</snp_id>
        <super_contig>c008701043.Contig2</super_contig>
        <contig_pos>69509</contig_pos>
        <strand></strand>
        <context>tttgtcccct[G/T]gggttatttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGGTGGTACACTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCT</left_flank>
        <right_flank>GGGTTATTTTACATCCTGAATCGAATGGAGTTTACAGAATTTAGATATCT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTTAAACTGAAAATTACTTTCAGTTTCTCGCTGTTTCGGTACACTTTTATAAGTAACTCAAAGAGTTTTCATTATTTGTCTTTTATACTTTCCAAATTATCTTTTTCCTTATTTTTTGCGTATTTTTGTAAAAGTGACCCAATTTGTCGCGCAACTCAAACTATTCAAAGAGAAAGGTCATGGAACATACATCATATGATGTTGGGAAGCTAATTAGGTATTGGTAGCGCAGGGCCACTTTTCTAAAATTAGGAAAAATTGGAAAAAATGATAATTTGGAAAGTCTACAAATCATTAAAATTATTTGAGATACTTATGAATGTATCAAAAAGCACGAAGCTGAAATTTATTTTCATTTTAAAAGAGAAAATTCGACAAAAAATGTACATGATTTTGAAATTTCTGGAGGGTCCTGGAGATATTGATCGGCCAGATGTAGGTCTTTTTGGTGGTACACTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTGGGGTTATTTTACATCCTGAATCGAATGGAGTTTACAGAATTTAGATATCTCTTCTCGTTCTTCCGGAACCCCCAAAATAGAGGGGGGGGGGGCGTCCTAAAGATATGACCGCACTAAAGACCGCTGTACGATAGTTAGTCTTCTTAGGGTGTGCTGAATGAAAAAATTCTCAAAAGGAACCTTTCTTACTTGTGGTCTAGTTTGAATAAACAATGCTCTCGAGAAGGGCAAGGATAAAAACTATTGATCCACTCTGATAATTTTAAGTAACGTTTGAAGACAAATTGGCCTGGACAAAATTTAAAGGAGGCCAAACACCAAAAAAAAATTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTGAAGACCGGCAGTTCAGGGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCACTGAGAGCTTAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTCCGGGCCGGCCCGG</canonical>
            <polymorphic>GATTTTAAACTGAAAATTACTTTCAGTTTCTCGCTGTTTCGGTACACTTTTATAAGTAACTCAAAGAGTTTTCATTATTTGTCTTTTATACTTTCCAAATTATCTTTTTCCTTATTTTTTGCGTATTTTTGTAAAAGTGACCCAATTTGTCGCGCAACTCAAACTATTCAAAGAGAAAGGTCATGGAACATACATCATATGATGTTGGGAAGCTAATTAGGTATTGGTAGCGCAGGGCCACTTTTCTAAAATTAGGAAAAATTGGAAAAAATGATAATTTGGAAAGTCTACAAATCATTAAAATTATTTGAGATACTTATGAATGTATCAAAAAGCACGAAGCTGAAATTTATTTTCATTTTAAAAGAGAAAATTCGACAAAAAATGTACATGATTTTGAAATTTCTGGAGGGTCCTGGAGATATTGATCGGCCAGATGTAGGTCTTTTTGGTGGTACACTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTKGGGTTATTTTACATCCTGAATCGAATGGAGTTTACAGAATTTAGATATCTCTTCTCGTTCTTCCGGAACCCCCAAAATAGAGGGGGGGGGGGCGTCCTAAAGATATGACCGCACTAAAGACCGCTGTACGATAGTTAGTCTTCTTAGGGTGTGCTGAATGAAAAAATTCTCAAAAGGAACCTTTCTTACTTGTGGTCTAGTTTGAATAAACAATGCTCTCGAGAAGGGCAAGGATAAAAACTATTGATCCACTCTGATAATTTTAAGTAACGTTTGAAGACAAATTGGCCTGGACAAAATTTAAAGGAGGCCAAACACCAAAAAAAAATTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTGAAGACCGGCAGTTCAGGGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCACTGAGAGCTTAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTCCGGGCCGGCCCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>416 292 189 82 9 9 3</canonical_bands>
                <polymorphic_bands>416 374 189 9 9 3</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>503 497</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>416 292 210 82</canonical_bands>
                <polymorphic_bands>416 374 210</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCATCCGATTTAGGATAGAATA</pcr_primer_p1>
		<pcr_primer_p2>CTATCGTACAGCGGTCTTTAGT</pcr_primer_p2>
		<pcr_amplicon_size>742</pcr_amplicon_size>
		<canonical_amplicon>TGGGGTTATTTTACATCCTGAATCGAATGGAGTTTACAGAATTTAGATATCTCTTCTCGTTCTTCCGGAACCCCCAAAATAGAGGGGGGGGGGGCGTCCTAAAGATATGACCGCACTAAAGACCGCTGTACGATAG</canonical_amplicon>
		<polymorphic_amplicon>TKGGGTTATTTTACATCCTGAATCGAATGGAGTTTACAGAATTTAGATATCTCTTCTCGTTCTTCCGGAACCCCCAAAATAGAGGGGGGGGGGGCGTCCTAAAGATATGACCGCACTAAAGACCGCTGTACGATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33905</snp_id>
        <super_contig>c008701043.Contig2</super_contig>
        <contig_pos>69615</contig_pos>
        <strand></strand>
        <context>CCTAAAGATA[T/A]GACCGCACTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CGTTCTTCCGGAACCCCCAAAATAGAGGGGGGGGGGGCGTCCTAAAGATA</left_flank>
        <right_flank>GACCGCACTAAAGACCGCTGTACGATAGTTAGTCTTCTTAGGGTGTGCTG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCTTATTTTTTGCGTATTTTTGTAAAAGTGACCCAATTTGTCGCGCAACTCAAACTATTCAAAGAGAAAGGTCATGGAACATACATCATATGATGTTGGGAAGCTAATTAGGTATTGGTAGCGCAGGGCCACTTTTCTAAAATTAGGAAAAATTGGAAAAAATGATAATTTGGAAAGTCTACAAATCATTAAAATTATTTGAGATACTTATGAATGTATCAAAAAGCACGAAGCTGAAATTTATTTTCATTTTAAAAGAGAAAATTCGACAAAAAATGTACATGATTTTGAAATTTCTGGAGGGTCCTGGAGATATTGATCGGCCAGATGTAGGTCTTTTTGGTGGTACACTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTGGGGTTATTTTACATCCTGAATCGAATGGAGTTTACAGAATTTAGATATCTCTTCTCGTTCTTCCGGAACCCCCAAAATAGAGGGGGGGGGGGCGTCCTAAAGATATGACCGCACTAAAGACCGCTGTACGATAGTTAGTCTTCTTAGGGTGTGCTGAATGAAAAAATTCTCAAAAGGAACCTTTCTTACTTGTGGTCTAGTTTGAATAAACAATGCTCTCGAGAAGGGCAAGGATAAAAACTATTGATCCACTCTGATAATTTTAAGTAACGTTTGAAGACAAATTGGCCTGGACAAAATTTAAAGGAGGCCAAACACCAAAAAAAAATTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTGAAGACCGGCAGTTCAGGGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCACTGAGAGCTTAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTCCGGGCCGGCCCGGAATTTTACAAGTATGATGGCAAGCATTGTGTTCATCTAGAAGAACAATCTTCTTTAGAAAAAACATAATCTGGATGTTACTTTCCGAATGTTGAATTTATAATTTC</canonical>
            <polymorphic>TTTCCTTATTTTTTGCGTATTTTTGTAAAAGTGACCCAATTTGTCGCGCAACTCAAACTATTCAAAGAGAAAGGTCATGGAACATACATCATATGATGTTGGGAAGCTAATTAGGTATTGGTAGCGCAGGGCCACTTTTCTAAAATTAGGAAAAATTGGAAAAAATGATAATTTGGAAAGTCTACAAATCATTAAAATTATTTGAGATACTTATGAATGTATCAAAAAGCACGAAGCTGAAATTTATTTTCATTTTAAAAGAGAAAATTCGACAAAAAATGTACATGATTTTGAAATTTCTGGAGGGTCCTGGAGATATTGATCGGCCAGATGTAGGTCTTTTTGGTGGTACACTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTGGGGTTATTTTACATCCTGAATCGAATGGAGTTTACAGAATTTAGATATCTCTTCTCGTTCTTCCGGAACCCCCAAAATAGAGGGGGGGGGGGCGTCCTAAAGATAWGACCGCACTAAAGACCGCTGTACGATAGTTAGTCTTCTTAGGGTGTGCTGAATGAAAAAATTCTCAAAAGGAACCTTTCTTACTTGTGGTCTAGTTTGAATAAACAATGCTCTCGAGAAGGGCAAGGATAAAAACTATTGATCCACTCTGATAATTTTAAGTAACGTTTGAAGACAAATTGGCCTGGACAAAATTTAAAGGAGGCCAAACACCAAAAAAAAATTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTGAAGACCGGCAGTTCAGGGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCACTGAGAGCTTAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTCCGGGCCGGCCCGGAATTTTACAAGTATGATGGCAAGCATTGTGTTCATCTAGAAGAACAATCTTCTTTAGAAAAAACATAATCTGGATGTTACTTTCCGAATGTTGAATTTATAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCATCCGATTTAGGATAGAATA</pcr_primer_p1>
		<pcr_primer_p2>AAGGTTCCTTTTGAGAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>791</pcr_amplicon_size>
		<canonical_amplicon>ATGACCGCACTAAAGACCGCTGTACGATAGTTAGTCTTCTTAGGGTGTGCTGAATGAAAAAATTCTCAAAAGGAACCTT</canonical_amplicon>
		<polymorphic_amplicon>AWGACCGCACTAAAGACCGCTGTACGATAGTTAGTCTTCTTAGGGTGTGCTGAATGAAAAAATTCTCAAAAGGAACCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33906</snp_id>
        <super_contig>c008701043.Contig2</super_contig>
        <contig_pos>69656</contig_pos>
        <strand></strand>
        <context>AGTCTTCTTA[G/A]GGTGTGCTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTAAAGATATGACCGCACTAAAGACCGCTGTACGATAGTTAGTCTTCTTA</left_flank>
        <right_flank>GGTGTGCTGAATGAAAAAATTCTCAAAAGGAACCTTTCTTACTTGTGGTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTCGCGCAACTCAAACTATTCAAAGAGAAAGGTCATGGAACATACATCATATGATGTTGGGAAGCTAATTAGGTATTGGTAGCGCAGGGCCACTTTTCTAAAATTAGGAAAAATTGGAAAAAATGATAATTTGGAAAGTCTACAAATCATTAAAATTATTTGAGATACTTATGAATGTATCAAAAAGCACGAAGCTGAAATTTATTTTCATTTTAAAAGAGAAAATTCGACAAAAAATGTACATGATTTTGAAATTTCTGGAGGGTCCTGGAGATATTGATCGGCCAGATGTAGGTCTTTTTGGTGGTACACTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTGGGGTTATTTTACATCCTGAATCGAATGGAGTTTACAGAATTTAGATATCTCTTCTCGTTCTTCCGGAACCCCCAAAATAGAGGGGGGGGGGGCGTCCTAAAGATATGACCGCACTAAAGACCGCTGTACGATAGTTAGTCTTCTTAGGGTGTGCTGAATGAAAAAATTCTCAAAAGGAACCTTTCTTACTTGTGGTCTAGTTTGAATAAACAATGCTCTCGAGAAGGGCAAGGATAAAAACTATTGATCCACTCTGATAATTTTAAGTAACGTTTGAAGACAAATTGGCCTGGACAAAATTTAAAGGAGGCCAAACACCAAAAAAAAATTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTGAAGACCGGCAGTTCAGGGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCACTGAGAGCTTAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTCCGGGCCGGCCCGGAATTTTACAAGTATGATGGCAAGCATTGTGTTCATCTAGAAGAACAATCTTCTTTAGAAAAAACATAATCTGGATGTTACTTTCCGAATGTTGAATTTATAATTTCTAATTTTTCAAAGATTTCAAAAAGAAAGTAAAATATTTTTT</canonical>
            <polymorphic>TGTCGCGCAACTCAAACTATTCAAAGAGAAAGGTCATGGAACATACATCATATGATGTTGGGAAGCTAATTAGGTATTGGTAGCGCAGGGCCACTTTTCTAAAATTAGGAAAAATTGGAAAAAATGATAATTTGGAAAGTCTACAAATCATTAAAATTATTTGAGATACTTATGAATGTATCAAAAAGCACGAAGCTGAAATTTATTTTCATTTTAAAAGAGAAAATTCGACAAAAAATGTACATGATTTTGAAATTTCTGGAGGGTCCTGGAGATATTGATCGGCCAGATGTAGGTCTTTTTGGTGGTACACTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTGGGGTTATTTTACATCCTGAATCGAATGGAGTTTACAGAATTTAGATATCTCTTCTCGTTCTTCCGGAACCCCCAAAATAGAGGGGGGGGGGGCGTCCTAAAGATATGACCGCACTAAAGACCGCTGTACGATAGTTAGTCTTCTTARGGTGTGCTGAATGAAAAAATTCTCAAAAGGAACCTTTCTTACTTGTGGTCTAGTTTGAATAAACAATGCTCTCGAGAAGGGCAAGGATAAAAACTATTGATCCACTCTGATAATTTTAAGTAACGTTTGAAGACAAATTGGCCTGGACAAAATTTAAAGGAGGCCAAACACCAAAAAAAAATTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTGAAGACCGGCAGTTCAGGGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCACTGAGAGCTTAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTCCGGGCCGGCCCGGAATTTTACAAGTATGATGGCAAGCATTGTGTTCATCTAGAAGAACAATCTTCTTTAGAAAAAACATAATCTGGATGTTACTTTCCGAATGTTGAATTTATAATTTCTAATTTTTCAAAGATTTCAAAAAGAAAGTAAAATATTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>496 268 212 24</canonical_bands>
                <polymorphic_bands>764 212 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCATCCGATTTAGGATAGAATA</pcr_primer_p1>
		<pcr_primer_p2>AACTAGACCACAAGTAAGAAAGGT</pcr_primer_p2>
		<pcr_amplicon_size>810</pcr_amplicon_size>
		<canonical_amplicon>AGGGTGTGCTGAATGAAAAAATTCTCAAAAGGAACCTTTCTTACTTGTGGTCTAGTT</canonical_amplicon>
		<polymorphic_amplicon>ARGGTGTGCTGAATGAAAAAATTCTCAAAAGGAACCTTTCTTACTTGTGGTCTAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33907</snp_id>
        <super_contig>c008701043.Contig2</super_contig>
        <contig_pos>69669</contig_pos>
        <strand></strand>
        <context>TGTGCTGAAT[G/A]AAAAAATTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGCACTAAAGACCGCTGTACGATAGTTAGTCTTCTTAGGGTGTGCTGAAT</left_flank>
        <right_flank>AAAAAATTCTCAAAAGGAACCTTTCTTACTTGTGGTCTAGTTTGAATAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTATTCAAAGAGAAAGGTCATGGAACATACATCATATGATGTTGGGAAGCTAATTAGGTATTGGTAGCGCAGGGCCACTTTTCTAAAATTAGGAAAAATTGGAAAAAATGATAATTTGGAAAGTCTACAAATCATTAAAATTATTTGAGATACTTATGAATGTATCAAAAAGCACGAAGCTGAAATTTATTTTCATTTTAAAAGAGAAAATTCGACAAAAAATGTACATGATTTTGAAATTTCTGGAGGGTCCTGGAGATATTGATCGGCCAGATGTAGGTCTTTTTGGTGGTACACTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTGGGGTTATTTTACATCCTGAATCGAATGGAGTTTACAGAATTTAGATATCTCTTCTCGTTCTTCCGGAACCCCCAAAATAGAGGGGGGGGGGGCGTCCTAAAGATATGACCGCACTAAAGACCGCTGTACGATAGTTAGTCTTCTTAGGGTGTGCTGAATGAAAAAATTCTCAAAAGGAACCTTTCTTACTTGTGGTCTAGTTTGAATAAACAATGCTCTCGAGAAGGGCAAGGATAAAAACTATTGATCCACTCTGATAATTTTAAGTAACGTTTGAAGACAAATTGGCCTGGACAAAATTTAAAGGAGGCCAAACACCAAAAAAAAATTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTGAAGACCGGCAGTTCAGGGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCACTGAGAGCTTAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTCCGGGCCGGCCCGGAATTTTACAAGTATGATGGCAAGCATTGTGTTCATCTAGAAGAACAATCTTCTTTAGAAAAAACATAATCTGGATGTTACTTTCCGAATGTTGAATTTATAATTTCTAATTTTTCAAAGATTTCAAAAAGAAAGTAAAATATTTTTTGCAGGTCTCCTCC</canonical>
            <polymorphic>AAACTATTCAAAGAGAAAGGTCATGGAACATACATCATATGATGTTGGGAAGCTAATTAGGTATTGGTAGCGCAGGGCCACTTTTCTAAAATTAGGAAAAATTGGAAAAAATGATAATTTGGAAAGTCTACAAATCATTAAAATTATTTGAGATACTTATGAATGTATCAAAAAGCACGAAGCTGAAATTTATTTTCATTTTAAAAGAGAAAATTCGACAAAAAATGTACATGATTTTGAAATTTCTGGAGGGTCCTGGAGATATTGATCGGCCAGATGTAGGTCTTTTTGGTGGTACACTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTGGGGTTATTTTACATCCTGAATCGAATGGAGTTTACAGAATTTAGATATCTCTTCTCGTTCTTCCGGAACCCCCAAAATAGAGGGGGGGGGGGCGTCCTAAAGATATGACCGCACTAAAGACCGCTGTACGATAGTTAGTCTTCTTAGGGTGTGCTGAATRAAAAAATTCTCAAAAGGAACCTTTCTTACTTGTGGTCTAGTTTGAATAAACAATGCTCTCGAGAAGGGCAAGGATAAAAACTATTGATCCACTCTGATAATTTTAAGTAACGTTTGAAGACAAATTGGCCTGGACAAAATTTAAAGGAGGCCAAACACCAAAAAAAAATTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTGAAGACCGGCAGTTCAGGGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCACTGAGAGCTTAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTCCGGGCCGGCCCGGAATTTTACAAGTATGATGGCAAGCATTGTGTTCATCTAGAAGAACAATCTTCTTTAGAAAAAACATAATCTGGATGTTACTTTCCGAATGTTGAATTTATAATTTCTAATTTTTCAAAGATTTCAAAAAGAAAGTAAAATATTTTTTGCAGGTCTCCTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCATCCGATTTAGGATAGAATA</pcr_primer_p1>
		<pcr_primer_p2>CATTGTTTATTCAAACTAGACCAC</pcr_primer_p2>
		<pcr_amplicon_size>823</pcr_amplicon_size>
		<canonical_amplicon>TGAAAAAATTCTCAAAAGGAACCTTTCTTACTTGTGGTCTAGTTTGAATAAACAATG</canonical_amplicon>
		<polymorphic_amplicon>TRAAAAAATTCTCAAAAGGAACCTTTCTTACTTGTGGTCTAGTTTGAATAAACAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33908</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>9168</contig_pos>
        <strand>+</strand>
        <context>AAACTTTTAT[A/G]TTTCAGCAWT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGTTTTAAAAAAGTTCGCAAAGTATGCATCACAGAAATAAAACTTTTAT</left_flank>
        <right_flank>TTTCAGCATTTTAGCGCTTTATGATTAGAATTCCTTTTTTTCAAATTTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATCTGGTGCATTGCGATAAACTATCCACAGATTTCTCCAGAACTTTCTCGATATCTGATGAATTGAAGTTCCTTGCAGTTTCAATAACAAATGTGACTTCACATGGGATCACTGTAGGTAAGTGGAAAGTTGAGTAGATGAGAAAGAGTGTTGTGAATAAAGTATGTTTCATGGCATCACCTGGAAATAGAAGGATTTCGAAAAGAAACACGGAAAGATGTAAATAGAAGTCTCTAGAATAAAAAACGGTTCAGGGAAGTGTAAATAAGAGAGGAAAACTAATAAATAATGTTTGCCAAGAGGAAAAAACTTCGAGATTCCATAAATCCAAAGTATTGAAAAATTCCGGTTTGGGTAACACTTTTCCGCATTCTGATTAGTTTTTCTTATTTTTAATTTCAATTTCAAAATTCGACGAAACAGAAAATTTTTCTAAAACTATTGAACTGTTTTAAAAAAGTTCGCAAAGTATGCATCACAGAAATAAAACTTTTATGTTTCAGCATTTTAGCGCTTTATGATTAGAATTCCTTTTTTTCAAATTTACTTTCAAAATTGAGTGAAACAGAAAAAAAGTTCAAATTTTCAAAAAAGAGACTAATAAAAATTTCATTAACCTATTAATGCTCACGAATTTGAAATATCTTGTTTCAAAGTTCACAAGTTTCATGTAGCTAGCTTCCGGAGAAGCAGTCCAGGTAATAAATAAAATGGAACGGAACTCTTCTTCTTCCTCTTCTTCTTTCCCTCTTTTTCCCTCCGAAAAGTTTAAAGTTGCATTCATTTCGGCAGGTTAATTAATGGACGTCGGAACGAGATGGAGAAGAGGAATAAAGGACGTCGTTTTAAAACATGAAAGAGATCTTTCATTGAATGGCATGGAAGAAGTTTCTAAAAAGTTTGGAATAAGAAAAGAAGGAATAATGGTTTGAACCTAACAAAAAAAATTGTCAAAAATTTCAGAATTTTTATTTGGGGATGAAAGACATGACTTAAT</canonical>
            <polymorphic>AATATCTGGTGCATTGCGATAAACTATCCACAGATTTCTCCAGAACTTTCTCGATATCTGATGAATTGAAGTTCCTTGCAGTTTCAATAACAAATGTGACTTCACATGGGATCACTGTAGGTAAGTGGAAAGTTGAGTAGATGAGAAAGAGTGTTGTGAATAAAGTATGTTTCATGGCATCACCTGGAAATAGAAGGATTTCGAAAAGAAACACGGAAAGATGTAAATAGAAGTCTCTAGAATAAAAAACGGTTCAGGGAAGTGTAAATAAGAGAGGAAAACTAATAAATAATGTTTGCCAAGAGGAAAAAACTTCGAGATTCCATAAATCCAAAGTATTGAAAAATTCCGGTTTGGGTAACACTTTTCCGCATTCTGATTAGTTTTTCTTATTTTTAATTTCAATTTCAAAATTCGACGAAACAGAAAATTTTTCTAAAACTATTGAACTGTTTTAAAAAAGTTCGCAAAGTATGCATCACAGAAATAAAACTTTTATRTTTCAGCATTTTAGCGCTTTATGATTAGAATTCCTTTTTTTCAAATTTACTTTCAAAATTGAGTGAAACAGAAAAAAAGTTCAAATTTTCAAAAAAGAGACTAATAAAAATTTCATTAACCTATTAATGCTCACGAATTTGAAATATCTTGTTTCAAAGTTCACAAGTTTCATGTAGCTAGCTTCCGGAGAAGCAGTCCAGGTAATAAATAAAATGGAACGGAACTCTTCTTCTTCCTCTTCTTCTTTCCCTCTTTTTCCCTCCGAAAAGTTTAAAGTTGCATTCATTTCGGCAGGTTAATTAATGGACGTCGGAACGAGATGGAGAAGAGGAATAAAGGACGTCGTTTTAAAACATGAAAGAGATCTTTCATTGAATGGCATGGAAGAAGTTTCTAAAAAGTTTGGAATAAGAAAAGAAGGAATAATGGTTTGAACCTAACAAAAAAAATTGTCAAAAATTTCAGAATTTTTATTTGGGGATGAAAGACATGACTTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTCAAAATTCGACGAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATATTTCAAATTCGTGAGCATTA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AATTTCAAAATTCGACGAAACAGAAAATTTTTCTAAAACTATTGAACTGTTTTAAAAAAGTTCGCAAAGTATGCATCACAGAAATAAAACTTTTATGTTTCAGCATTTTAGCGCTTTATGATTAGAATTCCTTTTTTTCAAATTTACTTTCAAAATTGAGTGAAACAGAAAAAAAGTTCAAATTTTCAAAAAAGAGACTAATAAAAATTTCATTAACCTATTAATGCTCACGAATTTGAAATAT</canonical_amplicon>
		<polymorphic_amplicon>AATTTCAAAATTCGACGAAACAGAAAATTTTTCTAAAACTATTGAACTGTTTTAAAAAAGTTCGCAAAGTATGCATCACAGAAATAAAACTTTTATRTTTCAGCATTTTAGCGCTTTATGATTAGAATTCCTTTTTTTCAAATTTACTTTCAAAATTGAGTGAAACAGAAAAAAAGTTCAAATTTTCAAAAAAGAGACTAATAAAAATTTCATTAACCTATTAATGCTCACGAATTTGAAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33909</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>9177</contig_pos>
        <strand>+</strand>
        <context>TRTTTCAGCA[A/T]TTTAGCGCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAGTTCGCAAAGTATGCATCACAGAAATAAAACTTTTATGTTTCAGCA</left_flank>
        <right_flank>TTTAGCGCTTTATGATTAGAATTCCTTTTTTTCAAATTTACTTTCAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCATTGCGATAAACTATCCACAGATTTCTCCAGAACTTTCTCGATATCTGATGAATTGAAGTTCCTTGCAGTTTCAATAACAAATGTGACTTCACATGGGATCACTGTAGGTAAGTGGAAAGTTGAGTAGATGAGAAAGAGTGTTGTGAATAAAGTATGTTTCATGGCATCACCTGGAAATAGAAGGATTTCGAAAAGAAACACGGAAAGATGTAAATAGAAGTCTCTAGAATAAAAAACGGTTCAGGGAAGTGTAAATAAGAGAGGAAAACTAATAAATAATGTTTGCCAAGAGGAAAAAACTTCGAGATTCCATAAATCCAAAGTATTGAAAAATTCCGGTTTGGGTAACACTTTTCCGCATTCTGATTAGTTTTTCTTATTTTTAATTTCAATTTCAAAATTCGACGAAACAGAAAATTTTTCTAAAACTATTGAACTGTTTTAAAAAAGTTCGCAAAGTATGCATCACAGAAATAAAACTTTTATGTTTCAGCATTTTAGCGCTTTATGATTAGAATTCCTTTTTTTCAAATTTACTTTCAAAATTGAGTGAAACAGAAAAAAAGTTCAAATTTTCAAAAAAGAGACTAATAAAAATTTCATTAACCTATTAATGCTCACGAATTTGAAATATCTTGTTTCAAAGTTCACAAGTTTCATGTAGCTAGCTTCCGGAGAAGCAGTCCAGGTAATAAATAAAATGGAACGGAACTCTTCTTCTTCCTCTTCTTCTTTCCCTCTTTTTCCCTCCGAAAAGTTTAAAGTTGCATTCATTTCGGCAGGTTAATTAATGGACGTCGGAACGAGATGGAGAAGAGGAATAAAGGACGTCGTTTTAAAACATGAAAGAGATCTTTCATTGAATGGCATGGAAGAAGTTTCTAAAAAGTTTGGAATAAGAAAAGAAGGAATAATGGTTTGAACCTAACAAAAAAAATTGTCAAAAATTTCAGAATTTTTATTTGGGGATGAAAGACATGACTTAATAACTAAATA</canonical>
            <polymorphic>TGCATTGCGATAAACTATCCACAGATTTCTCCAGAACTTTCTCGATATCTGATGAATTGAAGTTCCTTGCAGTTTCAATAACAAATGTGACTTCACATGGGATCACTGTAGGTAAGTGGAAAGTTGAGTAGATGAGAAAGAGTGTTGTGAATAAAGTATGTTTCATGGCATCACCTGGAAATAGAAGGATTTCGAAAAGAAACACGGAAAGATGTAAATAGAAGTCTCTAGAATAAAAAACGGTTCAGGGAAGTGTAAATAAGAGAGGAAAACTAATAAATAATGTTTGCCAAGAGGAAAAAACTTCGAGATTCCATAAATCCAAAGTATTGAAAAATTCCGGTTTGGGTAACACTTTTCCGCATTCTGATTAGTTTTTCTTATTTTTAATTTCAATTTCAAAATTCGACGAAACAGAAAATTTTTCTAAAACTATTGAACTGTTTTAAAAAAGTTCGCAAAGTATGCATCACAGAAATAAAACTTTTATGTTTCAGCAWTTTAGCGCTTTATGATTAGAATTCCTTTTTTTCAAATTTACTTTCAAAATTGAGTGAAACAGAAAAAAAGTTCAAATTTTCAAAAAAGAGACTAATAAAAATTTCATTAACCTATTAATGCTCACGAATTTGAAATATCTTGTTTCAAAGTTCACAAGTTTCATGTAGCTAGCTTCCGGAGAAGCAGTCCAGGTAATAAATAAAATGGAACGGAACTCTTCTTCTTCCTCTTCTTCTTTCCCTCTTTTTCCCTCCGAAAAGTTTAAAGTTGCATTCATTTCGGCAGGTTAATTAATGGACGTCGGAACGAGATGGAGAAGAGGAATAAAGGACGTCGTTTTAAAACATGAAAGAGATCTTTCATTGAATGGCATGGAAGAAGTTTCTAAAAAGTTTGGAATAAGAAAAGAAGGAATAATGGTTTGAACCTAACAAAAAAAATTGTCAAAAATTTCAGAATTTTTATTTGGGGATGAAAGACATGACTTAATAACTAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTCAAAATTCGACGAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATATTTCAAATTCGTGAGCATTA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AATTTCAAAATTCGACGAAACAGAAAATTTTTCTAAAACTATTGAACTGTTTTAAAAAAGTTCGCAAAGTATGCATCACAGAAATAAAACTTTTATGTTTCAGCATTTTAGCGCTTTATGATTAGAATTCCTTTTTTTCAAATTTACTTTCAAAATTGAGTGAAACAGAAAAAAAGTTCAAATTTTCAAAAAAGAGACTAATAAAAATTTCATTAACCTATTAATGCTCACGAATTTGAAATAT</canonical_amplicon>
		<polymorphic_amplicon>AATTTCAAAATTCGACGAAACAGAAAATTTTTCTAAAACTATTGAACTGTTTTAAAAAAGTTCGCAAAGTATGCATCACAGAAATAAAACTTTTATGTTTCAGCAWTTTAGCGCTTTATGATTAGAATTCCTTTTTTTCAAATTTACTTTCAAAATTGAGTGAAACAGAAAAAAAGTTCAAATTTTCAAAAAAGAGACTAATAAAAATTTCATTAACCTATTAATGCTCACGAATTTGAAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33910</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>92461</contig_pos>
        <strand>+</strand>
        <context>GAAGATGAGG[C/T]GGAGGTTAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTTCCAGCTTTGGTTGATGGGGATGTACTGGATGAAGATGAAGATGAGG</left_flank>
        <right_flank>GGAGGTTAGAGCTGGAGAAGTGGAAGCAAGAGAAGTGAAGGAAGATGTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACGTAGAAGATGTGGCAGGTAAGAGAGTGCTATGAGATTCAGAGGTGGTTTCTGATTCAAATGTCGTTGTTGGAAATGCATTTGGTTCCGTCGTTGTAATTTTAGAAAACGGTTCTGAGCTTTCAGAAGAGCTAGATATATCTTCAGTTGGAGTGCTCGTGAGTTTTGATGCCGTCGGGGTGATAATAATTGAGCTGCTAGATGAGGTGCGCTCAGAAGATGCTGGCGAAGTATCTTCAGAAAATGAGAAACCCGTTGATGTCTTGAAATTTTCAGTGGTGATTCGTTCAGATGACGTGACAACTGGATCGTTGCTAGAAGTTACCGATGTTTTCGGGAGGCTGGTCGAATCAGTTCCAGAAAACGTGGAAGCTTCAGGCGACTTCGATGATGTAGCAGAAATCTTGTTTGTAGTGGGTTTTGTAGTTGAAGATGGTTTCACGTCATGTGTTCCAGCTTTGGTTGATGGGGATGTACTGGATGAAGATGAAGATGAGGCGGAGGTTAGAGCTGGAGAAGTGGAAGCAAGAGAAGTGAAGGAAGATGTCGCTGAAGATGAAGAAATTTCTGGAGTAGTCTGGGTTGAGGTAGACGAGGATTCTGTGGAGCCAGATGAGGATCCGGTAGAGTCCAACGATGATCTAGTTCTTGTTGATGAGGATCTTGACGAGGAAGTTTCGGAAGACTCATGAGAAATGGTAGGCGTCTGAATATTTTTCGACGCGGTCTTCGAAGGAATTGGTGTCGTCGACTTCTCTTGCGATGCGGTGGAGGTCGAACTTGTTGTCGACGAAGTGAATGATGAGGACACCTGTGATTTAGATGACGTCGAATCAGAAGAAGTTGGAATCTTCGATGTGCTTGTACCAGACGATGTTGAACTTTTTGGAGTTTTCAGAGAAGTGGAACTATCAGAAGCAGACGTCGTGGTGGTGGAAGCTGGTGAGACGGTAGTCGATTTTAGAGGTGTTGTCGGTAAGATTTTTGTGCTTGTAGTGG</canonical>
            <polymorphic>GACGTAGAAGATGTGGCAGGTAAGAGAGTGCTATGAGATTCAGAGGTGGTTTCTGATTCAAATGTCGTTGTTGGAAATGCATTTGGTTCCGTCGTTGTAATTTTAGAAAACGGTTCTGAGCTTTCAGAAGAGCTAGATATATCTTCAGTTGGAGTGCTCGTGAGTTTTGATGCCGTCGGGGTGATAATAATTGAGCTGCTAGATGAGGTGCGCTCAGAAGATGCTGGCGAAGTATCTTCAGAAAATGAGAAACCCGTTGATGTCTTGAAATTTTCAGTGGTGATTCGTTCAGATGACGTGACAACTGGATCGTTGCTAGAAGTTACCGATGTTTTCGGGAGGCTGGTCGAATCAGTTCCAGAAAACGTGGAAGCTTCAGGCGACTTCGATGATGTAGCAGAAATCTTGTTTGTAGTGGGTTTTGTAGTTGAAGATGGTTTCACGTCATGTGTTCCAGCTTTGGTTGATGGGGATGTACTGGATGAAGATGAAGATGAGGYGGAGGTTAGAGCTGGAGAAGTGGAAGCAAGAGAAGTGAAGGAAGATGTCGCTGAAGATGAAGAAATTTCTGGAGTAGTCTGGGTTGAGGTAGACGAGGATTCTGTGGAGCCAGATGAGGATCCGGTAGAGTCCAACGATGATCTAGTTCTTGTTGATGAGGATCTTGACGAGGAAGTTTCGGAAGACTCATGAGAAATGGTAGGCGTCTGAATATTTTTCGACGCGGTCTTCGAAGGAATTGGTGTCGTCGACTTCTCTTGCGATGCGGTGGAGGTCGAACTTGTTGTCGACGAAGTGAATGATGAGGACACCTGTGATTTAGATGACGTCGAATCAGAAGAAGTTGGAATCTTCGATGTGCTTGTACCAGACGATGTTGAACTTTTTGGAGTTTTCAGAGAAGTGGAACTATCAGAAGCAGACGTCGTGGTGGTGGAAGCTGGTGAGACGGTAGTCGATTTTAGAGGTGTTGTCGGTAAGATTTTTGTGCTTGTAGTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGTAGTTGAAGATGGTTTCAC</pcr_primer_p1>
		<pcr_primer_p2>AAGATCCTCATCAACAAGAACTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTGTAGTTGAAGATGGTTTCACGTCATGTGTTCCAGCTTTGGTTGATGGGGATGTACTGGATGAAGATGAAGATGAGGCGGAGGTTAGAGCTGGAGAAGTGGAAGCAAGAGAAGTGAAGGAAGATGTCGCTGAAGATGAAGAAATTTCTGGAGTAGTCTGGGTTGAGGTAGACGAGGATTCTGTGGAGCCAGATGAGGATCCGGTAGAGTCCAACGATGATCTAGTTCTTGTTGATGAGGATCTT</canonical_amplicon>
		<polymorphic_amplicon>TTTGTAGTTGAAGATGGTTTCACGTCATGTGTTCCAGCTTTGGTTGATGGGGATGTACTGGATGAAGATGAAGATGAGGYGGAGGTTAGAGCTGGAGAAGTGGAAGCAAGAGAAGTGAAGGAAGATGTCGCTGAAGATGAAGAAATTTCTGGAGTAGTCTGGGTTGAGGTAGACGAGGATTCTGTGGAGCCAGATGAGGATCCGGTAGAGTCCAACGATGATCTAGTTCTTGTTGATGAGGATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33911</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>93043</contig_pos>
        <strand>+</strand>
        <context>TCAGTCGCTG[A/G]AATTATAGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGTACAGTAATCCCAGGTTTCAGCAAACCCCAAATGTCTTCAGTCGCTG</left_flank>
        <right_flank>AATTATAGTTGTTGTAGTTGAACTGGATGAGGAGGAAGAGGTCGATTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGAGGTAGACGAGGATTCTGTGGAGCCAGATGAGGATCCGGTAGAGTCCAACGATGATCTAGTTCTTGTTGATGAGGATCTTGACGAGGAAGTTTCGGAAGACTCATGAGAAATGGTAGGCGTCTGAATATTTTTCGACGCGGTCTTCGAAGGAATTGGTGTCGTCGACTTCTCTTGCGATGCGGTGGAGGTCGAACTTGTTGTCGACGAAGTGAATGATGAGGACACCTGTGATTTAGATGACGTCGAATCAGAAGAAGTTGGAATCTTCGATGTGCTTGTACCAGACGATGTTGAACTTTTTGGAGTTTTCAGAGAAGTGGAACTATCAGAAGCAGACGTCGTGGTGGTGGAAGCTGGTGAGACGGTAGTCGATTTTAGAGGTGTTGTCGGTAAGATTTTTGTGCTTGTAGTGGACTCTGAGCACACGTAGATTGTGACACCATCCAGTACAGTAATCCCAGGTTTCAGCAAACCCCAAATGTCTTCAGTCGCTGGAATTATAGTTGTTGTAGTTGAACTGGATGAGGAGGAAGAGGTCGATTCTTAAGAATTGAAAAGGTTAGTAGAAGGCTGATATTTGTTGACTTACCATCGTAGACATTAGAAGCATTCTGGACTGCAGATGAAGCAGAGTCTTAAAATTTAAAAAATTATTGTTTAATGATTTAAATATGGTCGTATGTATTATTCACCTGAACTCGAACTAGAAAAAAGTATCCCAAGAAGCAGAATAGTCAAAAAACTCATTTCGGAGGAGAAAATGAATTGAAAAGAAAGTTGGAAAAAGTGGCTCTCCTGGCCGAAAAGTTGGGTATCCCTGGCAAGTTGCCAAGTAACCACTGGCAGTTTGAGAAAAGTTTGTGAGCCGAGACGGCCTTTTTTACTTTTTTGAAGTAGGATTTTTTTTTTCTCGAAAAGTGGGAAGAAAGCTAGTAAACAAAAGTGACATCAGCATTTAGACTAGCCGGATGATGTGGTGGTATTGACAGTTGAGG</canonical>
            <polymorphic>GTTGAGGTAGACGAGGATTCTGTGGAGCCAGATGAGGATCCGGTAGAGTCCAACGATGATCTAGTTCTTGTTGATGAGGATCTTGACGAGGAAGTTTCGGAAGACTCATGAGAAATGGTAGGCGTCTGAATATTTTTCGACGCGGTCTTCGAAGGAATTGGTGTCGTCGACTTCTCTTGCGATGCGGTGGAGGTCGAACTTGTTGTCGACGAAGTGAATGATGAGGACACCTGTGATTTAGATGACGTCGAATCAGAAGAAGTTGGAATCTTCGATGTGCTTGTACCAGACGATGTTGAACTTTTTGGAGTTTTCAGAGAAGTGGAACTATCAGAAGCAGACGTCGTGGTGGTGGAAGCTGGTGAGACGGTAGTCGATTTTAGAGGTGTTGTCGGTAAGATTTTTGTGCTTGTAGTGGACTCTGAGCACACGTAGATTGTGACACCATCCAGTACAGTAATCCCAGGTTTCAGCAAACCCCAAATGTCTTCAGTCGCTGRAATTATAGTTGTTGTAGTTGAACTGGATGAGGAGGAAGAGGTCGATTCTTAAGAATTGAAAAGGTTAGTAGAAGGCTGATATTTGTTGACTTACCATCGTAGACATTAGAAGCATTCTGGACTGCAGATGAAGCAGAGTCTTAAAATTTAAAAAATTATTGTTTAATGATTTAAATATGGTCGTATGTATTATTCACCTGAACTCGAACTAGAAAAAAGTATCCCAAGAAGCAGAATAGTCAAAAAACTCATTTCGGAGGAGAAAATGAATTGAAAAGAAAGTTGGAAAAAGTGGCTCTCCTGGCCGAAAAGTTGGGTATCCCTGGCAAGTTGCCAAGTAACCACTGGCAGTTTGAGAAAAGTTTGTGAGCCGAGACGGCCTTTTTTACTTTTTTGAAGTAGGATTTTTTTTTTCTCGAAAAGTGGGAAGAAAGCTAGTAAACAAAAGTGACATCAGCATTTAGACTAGCCGGATGATGTGGTGGTATTGACAGTTGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTCGATTTTAGAGGTGTTGTC</pcr_primer_p1>
		<pcr_primer_p2>GTCCAGAATGCTTCTAATGTCT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAGTCGATTTTAGAGGTGTTGTCGGTAAGATTTTTGTGCTTGTAGTGGACTCTGAGCACACGTAGATTGTGACACCATCCAGTACAGTAATCCCAGGTTTCAGCAAACCCCAAATGTCTTCAGTCGCTGGAATTATAGTTGTTGTAGTTGAACTGGATGAGGAGGAAGAGGTCGATTCTTAAGAATTGAAAAGGTTAGTAGAAGGCTGATATTTGTTGACTTACCATCGTAGACATTAGAAGCATTCTGGAC</canonical_amplicon>
		<polymorphic_amplicon>TAGTCGATTTTAGAGGTGTTGTCGGTAAGATTTTTGTGCTTGTAGTGGACTCTGAGCACACGTAGATTGTGACACCATCCAGTACAGTAATCCCAGGTTTCAGCAAACCCCAAATGTCTTCAGTCGCTGRAATTATAGTTGTTGTAGTTGAACTGGATGAGGAGGAAGAGGTCGATTCTTAAGAATTGAAAAGGTTAGTAGAAGGCTGATATTTGTTGACTTACCATCGTAGACATTAGAAGCATTCTGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33912</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>113169</contig_pos>
        <strand></strand>
        <context>gccagctcct[A/G]gaatgccatc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGTACACACACTCTAACATTGATATTTCAGATCGTCCCGCCAGCTCCT</left_flank>
        <right_flank>GAATGCCATCACATCATCATCCAGCAGCTCCGCCCCACACCCACGGGAAC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATCACTTCCCAGTTCAGGTCCTGGACCTGCCCTCAAAACACACACAAGTCGGAACCTCTCTAACCAACATCGAAGAGGCAAAAGCTGCCATAAGGATAGACCGCACCATACAAACACGGGTCGGAACCGACGACATCGGCATCCTCTGCTTTTAAAAAGCACAAGCCGGGCAGGTTTCCAGTCTTCTGGTTGAGTTATTGGTAACTACCCGGAGAAGGAGTAACTCATATGGTTACCTCGGTTCATTTTGTAAAGGGTATTAATATCCTTTTAGGGTTATTTTACATTACCATAATATTTCCCCACCAGGTCATAGTCCAAGTTCCGCATTCCCATAGGGAGAGCACAAAGTCCAACACAGTCACGGGTGATAAGAAATCCCAGCGGGAAATCCATTAGATGACACATATAGGCTGAAACACCACATTCCCCTCTCAGCGCCTCCGTTCTGTACACACACTCTAACATTGATATTTCAGATCGTCCCGCCAGCTCCTAGAATGCCATCACATCATCATCCAGCAGCTCCGCCCCACACCCACGGGAACGATCCAGATAAATATCCCCCCTCTCGTCTATTCAAGGCCTTTTATCTTGTTTTAGATGTCTTATTATTGTTGCTGGTCTCAGACCAGTTAAATAAACCATTTGTTAAATCTACCCAAAGCGTTGAACCTTCACTATTTCCACCCTGCAACTAGCATCGAGATTGTGATGCCGAGTTGCTAACTGAGCCTAACTGCTCCTCCAAACTTCTCCCATCCAATCAATTGATTGACTAACAACAGCAACTGAACCTGAATGAGAGCGAACGGCTACTTCTGGAATGTACTAGCCACTGTTTGACTCCTCTTCCTTCTGCTCATGCCGCTGTCTAGCTATTACTGCGGTTTCACCGTTCCCGTTCCTACCGTTAGGCCTGTCTCTTTACTGTCGCCGCGTCCACCTGAATCTCCAAAAGAATATGAAATTCTTCAATTTTGATCTTCTCATCGTCA</canonical>
            <polymorphic>CGATCACTTCCCAGTTCAGGTCCTGGACCTGCCCTCAAAACACACACAAGTCGGAACCTCTCTAACCAACATCGAAGAGGCAAAAGCTGCCATAAGGATAGACCGCACCATACAAACACGGGTCGGAACCGACGACATCGGCATCCTCTGCTTTTAAAAAGCACAAGCCGGGCAGGTTTCCAGTCTTCTGGTTGAGTTATTGGTAACTACCCGGAGAAGGAGTAACTCATATGGTTACCTCGGTTCATTTTGTAAAGGGTATTAATATCCTTTTAGGGTTATTTTACATTACCATAATATTTCCCCACCAGGTCATAGTCCAAGTTCCGCATTCCCATAGGGAGAGCACAAAGTCCAACACAGTCACGGGTGATAAGAAATCCCAGCGGGAAATCCATTAGATGACACATATAGGCTGAAACACCACATTCCCCTCTCAGCGCCTCCGTTCTGTACACACACTCTAACATTGATATTTCAGATCGTCCCGCCAGCTCCTRGAATGCCATCACATCATCATCCAGCAGCTCCGCCCCACACCCACGGGAACGATCCAGATAAATATCCCCCCTCTCGTCTATTCAAGGCCTTTTATCTTGTTTTAGATGTCTTATTATTGTTGCTGGTCTCAGACCAGTTAAATAAACCATTTGTTAAATCTACCCAAAGCGTTGAACCTTCACTATTTCCACCCTGCAACTAGCATCGAGATTGTGATGCCGAGTTGCTAACTGAGCCTAACTGCTCCTCCAAACTTCTCCCATCCAATCAATTGATTGACTAACAACAGCAACTGAACCTGAATGAGAGCGAACGGCTACTTCTGGAATGTACTAGCCACTGTTTGACTCCTCTTCCTTCTGCTCATGCCGCTGTCTAGCTATTACTGCGGTTTCACCGTTCCCGTTCCTACCGTTAGGCCTGTCTCTTTACTGTCGCCGCGTCCACCTGAATCTCCAAAAGAATATGAAATTCTTCAATTTTGATCTTCTCATCGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>498 202 134 123 43</canonical_bands>
                <polymorphic_bands>700 134 123 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATGGTTACCTCGGTTCATT</pcr_primer_p1>
		<pcr_primer_p2>GCAGTTAGGCTCAGTTAGCA</pcr_primer_p2>
		<pcr_amplicon_size>517</pcr_amplicon_size>
		<canonical_amplicon>ATATGGTTACCTCGGTTCATTTTGTAAAGGGTATTAATATCCTTTTAGGGTTATTTTACATTACCATAATATTTCCCCACCAGGTCATAGTCCAAGTTCCGCATTCCCATAGGGAGAGCACAAAGTCCAACACAGTCACGGGTGATAAGAAATCCCAGCGGGAAATCCATTAGATGACACATATAGGCTGAAACACCACATTCCCCTCTCAGCGCCTCCGTTCTGTACACACACTCTAACATTGATATTTCAGATCGTCCCGCCAGCTCCTAGAATGCCATCACATCATCATCCAGCAGCTCCGCCCCACACCCACGGGAACGATCCAGATAAATATCCCCCCTCTCGTCTATTCAAGGCCTTTTATCTTGTTTTAGATGTCTTATTATTGTTGCTGGTCTCAGACCAGTTAAATAAACCATTTGTTAAATCTACCCAAAGCGTTGAACCTTCACTATTTCCACCCTGCAACTAGCATCGAGATTGTGATGCCGAGTTGCTAACTGAGCCTAACTGC</canonical_amplicon>
		<polymorphic_amplicon>ATATGGTTACCTCGGTTCATTTTGTAAAGGGTATTAATATCCTTTTAGGGTTATTTTACATTACCATAATATTTCCCCACCAGGTCATAGTCCAAGTTCCGCATTCCCATAGGGAGAGCACAAAGTCCAACACAGTCACGGGTGATAAGAAATCCCAGCGGGAAATCCATTAGATGACACATATAGGCTGAAACACCACATTCCCCTCTCAGCGCCTCCGTTCTGTACACACACTCTAACATTGATATTTCAGATCGTCCCGCCAGCTCCTRGAATGCCATCACATCATCATCCAGCAGCTCCGCCCCACACCCACGGGAACGATCCAGATAAATATCCCCCCTCTCGTCTATTCAAGGCCTTTTATCTTGTTTTAGATGTCTTATTATTGTTGCTGGTCTCAGACCAGTTAAATAAACCATTTGTTAAATCTACCCAAAGCGTTGAACCTTCACTATTTCCACCCTGCAACTAGCATCGAGATTGTGATGCCGAGTTGCTAACTGAGCCTAACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33913</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>113188</contig_pos>
        <strand></strand>
        <context>tcacatcatc[A/G]tccagcagct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGATATTTCAGATCGTCCCGCCAGCTCCTAGAATGCCATCACATCATC</left_flank>
        <right_flank>TCCAGCAGCTCCGCCCCACACCCACGGGAACGATCCAGATAAATATCCCC</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCTGGACCTGCCCTCAAAACACACACAAGTCGGAACCTCTCTAACCAACATCGAAGAGGCAAAAGCTGCCATAAGGATAGACCGCACCATACAAACACGGGTCGGAACCGACGACATCGGCATCCTCTGCTTTTAAAAAGCACAAGCCGGGCAGGTTTCCAGTCTTCTGGTTGAGTTATTGGTAACTACCCGGAGAAGGAGTAACTCATATGGTTACCTCGGTTCATTTTGTAAAGGGTATTAATATCCTTTTAGGGTTATTTTACATTACCATAATATTTCCCCACCAGGTCATAGTCCAAGTTCCGCATTCCCATAGGGAGAGCACAAAGTCCAACACAGTCACGGGTGATAAGAAATCCCAGCGGGAAATCCATTAGATGACACATATAGGCTGAAACACCACATTCCCCTCTCAGCGCCTCCGTTCTGTACACACACTCTAACATTGATATTTCAGATCGTCCCGCCAGCTCCTAGAATGCCATCACATCATCATCCAGCAGCTCCGCCCCACACCCACGGGAACGATCCAGATAAATATCCCCCCTCTCGTCTATTCAAGGCCTTTTATCTTGTTTTAGATGTCTTATTATTGTTGCTGGTCTCAGACCAGTTAAATAAACCATTTGTTAAATCTACCCAAAGCGTTGAACCTTCACTATTTCCACCCTGCAACTAGCATCGAGATTGTGATGCCGAGTTGCTAACTGAGCCTAACTGCTCCTCCAAACTTCTCCCATCCAATCAATTGATTGACTAACAACAGCAACTGAACCTGAATGAGAGCGAACGGCTACTTCTGGAATGTACTAGCCACTGTTTGACTCCTCTTCCTTCTGCTCATGCCGCTGTCTAGCTATTACTGCGGTTTCACCGTTCCCGTTCCTACCGTTAGGCCTGTCTCTTTACTGTCGCCGCGTCCACCTGAATCTCCAAAAGAATATGAAATTCTTCAATTTTGATCTTCTCATCGTCAAGAGGGATTATAAATTGTG</canonical>
            <polymorphic>GTCCTGGACCTGCCCTCAAAACACACACAAGTCGGAACCTCTCTAACCAACATCGAAGAGGCAAAAGCTGCCATAAGGATAGACCGCACCATACAAACACGGGTCGGAACCGACGACATCGGCATCCTCTGCTTTTAAAAAGCACAAGCCGGGCAGGTTTCCAGTCTTCTGGTTGAGTTATTGGTAACTACCCGGAGAAGGAGTAACTCATATGGTTACCTCGGTTCATTTTGTAAAGGGTATTAATATCCTTTTAGGGTTATTTTACATTACCATAATATTTCCCCACCAGGTCATAGTCCAAGTTCCGCATTCCCATAGGGAGAGCACAAAGTCCAACACAGTCACGGGTGATAAGAAATCCCAGCGGGAAATCCATTAGATGACACATATAGGCTGAAACACCACATTCCCCTCTCAGCGCCTCCGTTCTGTACACACACTCTAACATTGATATTTCAGATCGTCCCGCCAGCTCCTAGAATGCCATCACATCATCRTCCAGCAGCTCCGCCCCACACCCACGGGAACGATCCAGATAAATATCCCCCCTCTCGTCTATTCAAGGCCTTTTATCTTGTTTTAGATGTCTTATTATTGTTGCTGGTCTCAGACCAGTTAAATAAACCATTTGTTAAATCTACCCAAAGCGTTGAACCTTCACTATTTCCACCCTGCAACTAGCATCGAGATTGTGATGCCGAGTTGCTAACTGAGCCTAACTGCTCCTCCAAACTTCTCCCATCCAATCAATTGATTGACTAACAACAGCAACTGAACCTGAATGAGAGCGAACGGCTACTTCTGGAATGTACTAGCCACTGTTTGACTCCTCTTCCTTCTGCTCATGCCGCTGTCTAGCTATTACTGCGGTTTCACCGTTCCCGTTCCTACCGTTAGGCCTGTCTCTTTACTGTCGCCGCGTCCACCTGAATCTCCAAAAGAATATGAAATTCTTCAATTTTGATCTTCTCATCGTCAAGAGGGATTATAAATTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATGGTTACCTCGGTTCATT</pcr_primer_p1>
		<pcr_primer_p2>GCAGTTAGGCTCAGTTAGCA</pcr_primer_p2>
		<pcr_amplicon_size>517</pcr_amplicon_size>
		<canonical_amplicon>ATATGGTTACCTCGGTTCATTTTGTAAAGGGTATTAATATCCTTTTAGGGTTATTTTACATTACCATAATATTTCCCCACCAGGTCATAGTCCAAGTTCCGCATTCCCATAGGGAGAGCACAAAGTCCAACACAGTCACGGGTGATAAGAAATCCCAGCGGGAAATCCATTAGATGACACATATAGGCTGAAACACCACATTCCCCTCTCAGCGCCTCCGTTCTGTACACACACTCTAACATTGATATTTCAGATCGTCCCGCCAGCTCCTAGAATGCCATCACATCATCATCCAGCAGCTCCGCCCCACACCCACGGGAACGATCCAGATAAATATCCCCCCTCTCGTCTATTCAAGGCCTTTTATCTTGTTTTAGATGTCTTATTATTGTTGCTGGTCTCAGACCAGTTAAATAAACCATTTGTTAAATCTACCCAAAGCGTTGAACCTTCACTATTTCCACCCTGCAACTAGCATCGAGATTGTGATGCCGAGTTGCTAACTGAGCCTAACTGC</canonical_amplicon>
		<polymorphic_amplicon>ATATGGTTACCTCGGTTCATTTTGTAAAGGGTATTAATATCCTTTTAGGGTTATTTTACATTACCATAATATTTCCCCACCAGGTCATAGTCCAAGTTCCGCATTCCCATAGGGAGAGCACAAAGTCCAACACAGTCACGGGTGATAAGAAATCCCAGCGGGAAATCCATTAGATGACACATATAGGCTGAAACACCACATTCCCCTCTCAGCGCCTCCGTTCTGTACACACACTCTAACATTGATATTTCAGATCGTCCCGCCAGCTCCTAGAATGCCATCACATCATCRTCCAGCAGCTCCGCCCCACACCCACGGGAACGATCCAGATAAATATCCCCCCTCTCGTCTATTCAAGGCCTTTTATCTTGTTTTAGATGTCTTATTATTGTTGCTGGTCTCAGACCAGTTAAATAAACCATTTGTTAAATCTACCCAAAGCGTTGAACCTTCACTATTTCCACCCTGCAACTAGCATCGAGATTGTGATGCCGAGTTGCTAACTGAGCCTAACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33914</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>136670</contig_pos>
        <strand></strand>
        <context>caaaagtcag[G/A]ccatcacgtt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTATGTCATTCTAATTTGGCGGCCTAGAAAACCCAACTTGCAAAAGTCAG</left_flank>
        <right_flank>CCATCACGTTAAAGTGTATTCGTTTCACAAATTCTTCGAAAAATTTTGAT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATGAACTTCATTAAACTGTATGTAAACGTTTTTTCCTCACGAGAATATTCGTTTCGAAATACGACATCGGGTCGCGCGCAGCTGGGGTATCTGGGGTTGACAACGTATGACGCCGCGCTCCCAACTAGAAAGTCACTCTCTGTGGCTGGTGCATTGTATTTGCTGAAAATAGTCGAAATGTATAAGAATTTCTACTGTAACTACACTTTTACATTAAGGCCATCATGGTAGAATGGCCTAGAAATAGCCTAACATGCCCCTGATATGTTTTCTCGATCATTTTGAAGTGGTGGCCTAGAATACTCAGTTTGAAAAAGTTGAGCCACCGCATGTGTTAGCCCAGTTCTAGGCCATTTTACCATGGTAACCTAGAAAACTTAACTCGAAAAGTTAGGCCCCCACTTCAAAATGACCTAGAAAATACACAAAGTGAATATCAAACCAATTCTATGTCATTCTAATTTGGCGGCCTAGAAAACCCAACTTGCAAAAGTCAGGCCATCACGTTAAAGTGTATTCGTTTCACAAATTCTTCGAAAAATTTTGATGACTTTCTCAAACATTTTTCGAAGTCGTGTCGAAAGGACACACTGTTCGCAACTTCAAAAATCCGGTTTTTGAAAATTCAGAAAATCATAAGTCCCGTTTTCAAAAGTTCGGAACGTTCTAAAATGTTGAGGGTACCAAAAGCTCCGATTATCGAAAAATGGAATACTTCGAAATTCCAATTTTCGAAAAATTCGGAAAAAAATTAGAAATTCCTGTTACTAAAAATTAAGAACATTTTCTGAATTCCGAATTTTTAATTTTCAGAAATTTTGGATTTTTCGAAATTATGATTACTACTCAGATATTTGAAATATTCTGGGTTTTTTTTATTTGTTGCGAAAAAAAATTTCCAATTCATGTACCCCTGTACATGAAAGTTACTGAAAAATTTTAACTTTCGAATGATTTTCTTTTAAGTTTCTGAACGTTCTTCTTCTCGTTTTCATATG</canonical>
            <polymorphic>AAATGAACTTCATTAAACTGTATGTAAACGTTTTTTCCTCACGAGAATATTCGTTTCGAAATACGACATCGGGTCGCGCGCAGCTGGGGTATCTGGGGTTGACAACGTATGACGCCGCGCTCCCAACTAGAAAGTCACTCTCTGTGGCTGGTGCATTGTATTTGCTGAAAATAGTCGAAATGTATAAGAATTTCTACTGTAACTACACTTTTACATTAAGGCCATCATGGTAGAATGGCCTAGAAATAGCCTAACATGCCCCTGATATGTTTTCTCGATCATTTTGAAGTGGTGGCCTAGAATACTCAGTTTGAAAAAGTTGAGCCACCGCATGTGTTAGCCCAGTTCTAGGCCATTTTACCATGGTAACCTAGAAAACTTAACTCGAAAAGTTAGGCCCCCACTTCAAAATGACCTAGAAAATACACAAAGTGAATATCAAACCAATTCTATGTCATTCTAATTTGGCGGCCTAGAAAACCCAACTTGCAAAAGTCAGRCCATCACGTTAAAGTGTATTCGTTTCACAAATTCTTCGAAAAATTTTGATGACTTTCTCAAACATTTTTCGAAGTCGTGTCGAAAGGACACACTGTTCGCAACTTCAAAAATCCGGTTTTTGAAAATTCAGAAAATCATAAGTCCCGTTTTCAAAAGTTCGGAACGTTCTAAAATGTTGAGGGTACCAAAAGCTCCGATTATCGAAAAATGGAATACTTCGAAATTCCAATTTTCGAAAAATTCGGAAAAAAATTAGAAATTCCTGTTACTAAAAATTAAGAACATTTTCTGAATTCCGAATTTTTAATTTTCAGAAATTTTGGATTTTTCGAAATTATGATTACTACTCAGATATTTGAAATATTCTGGGTTTTTTTTATTTGTTGCGAAAAAAAATTTCCAATTCATGTACCCCTGTACATGAAAGTTACTGAAAAATTTTAACTTTCGAATGATTTTCTTTTAAGTTTCTGAACGTTCTTCTTCTCGTTTTCATATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 221 74 57 57 45 29 17</canonical_bands>
                <polymorphic_bands>529 221 74 57 57 45 17</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>308 192 83 74 74 64 46 45 29 29 17 16 12 11</canonical_bands>
                <polymorphic_bands>308 221 83 74 74 64 46 45 29 17 16 12 11</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 221 148 57 57 17</canonical_bands>
                <polymorphic_bands>648 221 57 57 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCTGAAAATAGTCGAAATGTAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAAGTTGCGAACAGT</pcr_primer_p2>
		<pcr_amplicon_size>449</pcr_amplicon_size>
		<canonical_amplicon>TGCTGAAAATAGTCGAAATGTATAAGAATTTCTACTGTAACTACACTTTTACATTAAGGCCATCATGGTAGAATGGCCTAGAAATAGCCTAACATGCCCCTGATATGTTTTCTCGATCATTTTGAAGTGGTGGCCTAGAATACTCAGTTTGAAAAAGTTGAGCCACCGCATGTGTTAGCCCAGTTCTAGGCCATTTTACCATGGTAACCTAGAAAACTTAACTCGAAAAGTTAGGCCCCCACTTCAAAATGACCTAGAAAATACACAAAGTGAATATCAAACCAATTCTATGTCATTCTAATTTGGCGGCCTAGAAAACCCAACTTGCAAAAGTCAGGCCATCACGTTAAAGTGTATTCGTTTCACAAATTCTTCGAAAAATTTTGATGACTTTCTCAAACATTTTTCGAAGTCGTGTCGAAAGGACACACTGTTCGCAACTTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGCTGAAAATAGTCGAAATGTATAAGAATTTCTACTGTAACTACACTTTTACATTAAGGCCATCATGGTAGAATGGCCTAGAAATAGCCTAACATGCCCCTGATATGTTTTCTCGATCATTTTGAAGTGGTGGCCTAGAATACTCAGTTTGAAAAAGTTGAGCCACCGCATGTGTTAGCCCAGTTCTAGGCCATTTTACCATGGTAACCTAGAAAACTTAACTCGAAAAGTTAGGCCCCCACTTCAAAATGACCTAGAAAATACACAAAGTGAATATCAAACCAATTCTATGTCATTCTAATTTGGCGGCCTAGAAAACCCAACTTGCAAAAGTCAGRCCATCACGTTAAAGTGTATTCGTTTCACAAATTCTTCGAAAAATTTTGATGACTTTCTCAAACATTTTTCGAAGTCGTGTCGAAAGGACACACTGTTCGCAACTTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33915</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>138308</contig_pos>
        <strand></strand>
        <context>attgaatcgg[G/C]ccgaaggcgc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AAAAAATGAGAAGTGATGTGATGAACCAGTAAAGAAGCAGATTGAATCGG</left_flank>
        <right_flank>CCGAAGGCGCACCAGCTTGCTGGTTACAAATAAAAATGTTATAAATTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCCCTTATTACCATTCTTTCCCCCTTATGTGACCACTTCCTCTCCTCCAATATTTTTCCTGACGACCTTTTGCATGGACGTCGGAAACTATTCGTCTTTATTTTCCCGAAATCCTTATTCTTTAACTGTGTATTCCATTCTTGTCTACACAAGTTTCGTAACATAAATGCGGAATCCAGTCATTGGCAAACCGCTCCGTTGGAGCTCGTGAACCGGACCCTCGATCTGCTTGGACCCGTTCAATTGGTCGTCATCAACAATTCGATCGTCTACGGAACGATCCAGGTGTCGGCTTCGAATTCTGGAATCCTTCGGATCCTAGAGTGAGTGAAAAATGTGAAATCTTCCTTATATATAAAACGCTAGAGGCGTCTGTCTGTCCTCTTGAGGATCTGTGGACTTTTGAAAAGCTCGAAAAATAAATTTAGATTAACGTGACCCTTTTAGAAAAAATGAGAAGTGATGTGATGAACCAGTAAAGAAGCAGATTGAATCGGGCCGAAGGCGCACCAGCTTGCTGGTTACAAATAAAAATGTTATAAATTTTTCAGAATGTCCCAGGAATGTTCGTATACCCAGATGAAATGTCATTGAATATATTGAAGCCGATTACCGTGGTCTATCAAGAGGCCTGGTGTCTGTTTATGGAATATTTTGACATCACAAATATCGATTTAATGGAAAACAAAGAAGAAAAGCAACCAGTGCACAAGGTTTCAAACGAAGAAGAGAGAAGTCAGGGAATCGAAGCACCACCACAAATCGAGCCTTTGATTGATGAAATGGAACACGGAGAAAGTGATATGTTGACAGCGGATCCTCAGTCAGTCGAGACCGATCCTACGTCCTAACCCGAGAGTGTCAGCAACCTGAAATGACCCCCAATTCCCCCAAATGTGTAAAATAAGCGGTGCAAAGGAAATAACAGTACACAAAGTATTCAAATCCAAGTTTATTAACGGAAAGGGGTTTGAATAAACGGCAAAGACAACGGAATT</canonical>
            <polymorphic>TTCCCCTTATTACCATTCTTTCCCCCTTATGTGACCACTTCCTCTCCTCCAATATTTTTCCTGACGACCTTTTGCATGGACGTCGGAAACTATTCGTCTTTATTTTCCCGAAATCCTTATTCTTTAACTGTGTATTCCATTCTTGTCTACACAAGTTTCGTAACATAAATGCGGAATCCAGTCATTGGCAAACCGCTCCGTTGGAGCTCGTGAACCGGACCCTCGATCTGCTTGGACCCGTTCAATTGGTCGTCATCAACAATTCGATCGTCTACGGAACGATCCAGGTGTCGGCTTCGAATTCTGGAATCCTTCGGATCCTAGAGTGAGTGAAAAATGTGAAATCTTCCTTATATATAAAACGCTAGAGGCGTCTGTCTGTCCTCTTGAGGATCTGTGGACTTTTGAAAAGCTCGAAAAATAAATTTAGATTAACGTGACCCTTTTAGAAAAAATGAGAAGTGATGTGATGAACCAGTAAAGAAGCAGATTGAATCGGSCCGAAGGCGCACCAGCTTGCTGGTTACAAATAAAAATGTTATAAATTTTTCAGAATGTCCCAGGAATGTTCGTATACCCAGATGAAATGTCATTGAATATATTGAAGCCGATTACCGTGGTCTATCAAGAGGCCTGGTGTCTGTTTATGGAATATTTTGACATCACAAATATCGATTTAATGGAAAACAAAGAAGAAAAGCAACCAGTGCACAAGGTTTCAAACGAAGAAGAGAGAAGTCAGGGAATCGAAGCACCACCACAAATCGAGCCTTTGATTGATGAAATGGAACACGGAGAAAGTGATATGTTGACAGCGGATCCTCAGTCAGTCGAGACCGATCCTACGTCCTAACCCGAGAGTGTCAGCAACCTGAAATGACCCCCAATTCCCCCAAATGTGTAAAATAAGCGGTGCAAAGGAAATAACAGTACACAAAGTATTCAAATCCAAGTTTATTAACGGAAAGGGGTTTGAATAAACGGCAAAGACAACGGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 368 132</canonical_bands>
                <polymorphic_bands>632 368</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>506 294 200</canonical_bands>
                <polymorphic_bands>706 294</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>231 206 137 118 92 88 88 25 15</canonical_bands>
                <polymorphic_bands>231 206 137 118 103 92 88 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTAGAGTGAGTGAAAAATGTGA</pcr_primer_p1>
		<pcr_primer_p2>ACATTTCATCTGGGTATACGA</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>CCTAGAGTGAGTGAAAAATGTGAAATCTTCCTTATATATAAAACGCTAGAGGCGTCTGTCTGTCCTCTTGAGGATCTGTGGACTTTTGAAAAGCTCGAAAAATAAATTTAGATTAACGTGACCCTTTTAGAAAAAATGAGAAGTGATGTGATGAACCAGTAAAGAAGCAGATTGAATCGGGCCGAAGGCGCACCAGCTTGCTGGTTACAAATAAAAATGTTATAAATTTTTCAGAATGTCCCAGGAATGTTCGTATACCCAGATGAAATGT</canonical_amplicon>
		<polymorphic_amplicon>CCTAGAGTGAGTGAAAAATGTGAAATCTTCCTTATATATAAAACGCTAGAGGCGTCTGTCTGTCCTCTTGAGGATCTGTGGACTTTTGAAAAGCTCGAAAAATAAATTTAGATTAACGTGACCCTTTTAGAAAAAATGAGAAGTGATGTGATGAACCAGTAAAGAAGCAGATTGAATCGGSCCGAAGGCGCACCAGCTTGCTGGTTACAAATAAAAATGTTATAAATTTTTCAGAATGTCCCAGGAATGTTCGTATACCCAGATGAAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33916</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>138323</contig_pos>
        <strand></strand>
        <context>aggcgcacca[G/T]cttgctggtT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGTGATGAACCAGTAAAGAAGCAGATTGAATCGGGCCGAAGGCGCACCA</left_flank>
        <right_flank>CTTGCTGGTTACAAATAAAAATGTTATAAATTTTTCAGAATGTCCCAGGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTTCCCCCTTATGTGACCACTTCCTCTCCTCCAATATTTTTCCTGACGACCTTTTGCATGGACGTCGGAAACTATTCGTCTTTATTTTCCCGAAATCCTTATTCTTTAACTGTGTATTCCATTCTTGTCTACACAAGTTTCGTAACATAAATGCGGAATCCAGTCATTGGCAAACCGCTCCGTTGGAGCTCGTGAACCGGACCCTCGATCTGCTTGGACCCGTTCAATTGGTCGTCATCAACAATTCGATCGTCTACGGAACGATCCAGGTGTCGGCTTCGAATTCTGGAATCCTTCGGATCCTAGAGTGAGTGAAAAATGTGAAATCTTCCTTATATATAAAACGCTAGAGGCGTCTGTCTGTCCTCTTGAGGATCTGTGGACTTTTGAAAAGCTCGAAAAATAAATTTAGATTAACGTGACCCTTTTAGAAAAAATGAGAAGTGATGTGATGAACCAGTAAAGAAGCAGATTGAATCGGGCCGAAGGCGCACCAGCTTGCTGGTTACAAATAAAAATGTTATAAATTTTTCAGAATGTCCCAGGAATGTTCGTATACCCAGATGAAATGTCATTGAATATATTGAAGCCGATTACCGTGGTCTATCAAGAGGCCTGGTGTCTGTTTATGGAATATTTTGACATCACAAATATCGATTTAATGGAAAACAAAGAAGAAAAGCAACCAGTGCACAAGGTTTCAAACGAAGAAGAGAGAAGTCAGGGAATCGAAGCACCACCACAAATCGAGCCTTTGATTGATGAAATGGAACACGGAGAAAGTGATATGTTGACAGCGGATCCTCAGTCAGTCGAGACCGATCCTACGTCCTAACCCGAGAGTGTCAGCAACCTGAAATGACCCCCAATTCCCCCAAATGTGTAAAATAAGCGGTGCAAAGGAAATAACAGTACACAAAGTATTCAAATCCAAGTTTATTAACGGAAAGGGGTTTGAATAAACGGCAAAGACAACGGAATTGGGAAAAGAAAGCAA</canonical>
            <polymorphic>TTCTTTCCCCCTTATGTGACCACTTCCTCTCCTCCAATATTTTTCCTGACGACCTTTTGCATGGACGTCGGAAACTATTCGTCTTTATTTTCCCGAAATCCTTATTCTTTAACTGTGTATTCCATTCTTGTCTACACAAGTTTCGTAACATAAATGCGGAATCCAGTCATTGGCAAACCGCTCCGTTGGAGCTCGTGAACCGGACCCTCGATCTGCTTGGACCCGTTCAATTGGTCGTCATCAACAATTCGATCGTCTACGGAACGATCCAGGTGTCGGCTTCGAATTCTGGAATCCTTCGGATCCTAGAGTGAGTGAAAAATGTGAAATCTTCCTTATATATAAAACGCTAGAGGCGTCTGTCTGTCCTCTTGAGGATCTGTGGACTTTTGAAAAGCTCGAAAAATAAATTTAGATTAACGTGACCCTTTTAGAAAAAATGAGAAGTGATGTGATGAACCAGTAAAGAAGCAGATTGAATCGGGCCGAAGGCGCACCAKCTTGCTGGTTACAAATAAAAATGTTATAAATTTTTCAGAATGTCCCAGGAATGTTCGTATACCCAGATGAAATGTCATTGAATATATTGAAGCCGATTACCGTGGTCTATCAAGAGGCCTGGTGTCTGTTTATGGAATATTTTGACATCACAAATATCGATTTAATGGAAAACAAAGAAGAAAAGCAACCAGTGCACAAGGTTTCAAACGAAGAAGAGAGAAGTCAGGGAATCGAAGCACCACCACAAATCGAGCCTTTGATTGATGAAATGGAACACGGAGAAAGTGATATGTTGACAGCGGATCCTCAGTCAGTCGAGACCGATCCTACGTCCTAACCCGAGAGTGTCAGCAACCTGAAATGACCCCCAATTCCCCCAAATGTGTAAAATAAGCGGTGCAAAGGAAATAACAGTACACAAAGTATTCAAATCCAAGTTTATTAACGGAAAGGGGTTTGAATAAACGGCAAAGACAACGGAATTGGGAAAAGAAAGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>500 206 191 103</canonical_bands>
                <polymorphic_bands>603 206 191</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>246 191 137 118 92 88 88 25 15</canonical_bands>
                <polymorphic_bands>246 191 137 118 107 88 88 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTAGAGTGAGTGAAAAATGTGA</pcr_primer_p1>
		<pcr_primer_p2>ACATTTCATCTGGGTATACGA</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>CCTAGAGTGAGTGAAAAATGTGAAATCTTCCTTATATATAAAACGCTAGAGGCGTCTGTCTGTCCTCTTGAGGATCTGTGGACTTTTGAAAAGCTCGAAAAATAAATTTAGATTAACGTGACCCTTTTAGAAAAAATGAGAAGTGATGTGATGAACCAGTAAAGAAGCAGATTGAATCGGGCCGAAGGCGCACCAGCTTGCTGGTTACAAATAAAAATGTTATAAATTTTTCAGAATGTCCCAGGAATGTTCGTATACCCAGATGAAATGT</canonical_amplicon>
		<polymorphic_amplicon>CCTAGAGTGAGTGAAAAATGTGAAATCTTCCTTATATATAAAACGCTAGAGGCGTCTGTCTGTCCTCTTGAGGATCTGTGGACTTTTGAAAAGCTCGAAAAATAAATTTAGATTAACGTGACCCTTTTAGAAAAAATGAGAAGTGATGTGATGAACCAGTAAAGAAGCAGATTGAATCGGGCCGAAGGCGCACCAKCTTGCTGGTTACAAATAAAAATGTTATAAATTTTTCAGAATGTCCCAGGAATGTTCGTATACCCAGATGAAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33917</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>208151</contig_pos>
        <strand>+</strand>
        <context>aagGGGCATT[C/T]TATCAGAGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATCTTTTACAGGGACCGAGATAAATTGGCTCAACGTTGAAAGGGGCATT</left_flank>
        <right_flank>TATCAGAGTGAGTCTGCTAGGATGGAAAGTTTAAGCATAACTTGTTTCAA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAACGTTTTTAGTGTGTGACCGGTGTCAATTAAAATAGAGATTCGTCCCTCTAAATTCTAAAGAAGGAGAAGACACCCAACACTATCTTAATTTCAAATCTCTATGTGAACCGTTCGGAGTGGAAGAAAAGTTCGCCTCTCTGCCCACAAATTGACACTATCGCCAAGTTCGATCTTTTCTTTTGATTTGTGAAGCGATGCGAGCGGACAGGTGACACGACAAAAAAGGTTTCGGGTGAAGTGGTAGAGAACGCATAAATTGGTAGAACAGAGTTAGGAAATTGAAATTAGGGACTGACAAGTTACCGTAAACTCTAATAGAATGATTTCCTAATTTTCAACTTTGAGCCAATTTATCTCAGTTCTTGTTGAAGTTACCAAAAAGTGTCCAACAGACAAAATGTTCATCAAATTATCATAAATATTTTGTCGGTTAATCACTTCTTTATATCTTTTACAGGGACCGAGATAAATTGGCTCAACGTTGAAAGGGGCATTTTATCAGAGTGAGTCTGCTAGGATGGAAAGTTTAAGCATAACTTGTTTCAAAATTGGAATTTCTGTTTAGATCAAAATGATATACAAAATGATATCTGATTCCACTATATTCAAATTTCAAGTTTCGAGCCAGTTGCCCTAAAAAAGCCCGGTTGATTTTGGGTCATCCGGACCGGCAGAATGGCTATTTTAGGGCCTTTGACTCAAAACGCAGTATGCATTTCCATCCAGTAGAGTTAGATATCATTCTGTAGATCTTGTTAAGTTCTATATTTTACTTTTCGATTCAAATTGAAATTCCAATTTTGAACCGAATTGTGCGCCGGCCCGATTAACAAGTATGGATTACGGTAATTCAGAAAGTTGTTTTCAGTTTTCAGTTGGTTTTGCACAGAAGATCAGGTTACTGTAATTTCTATTCTCTATAATGAAGATCCCCACATTCTACACTCGGATGGGCAAGATTCCCAAATGATGGGCAAGATTTGCTCTACAGATGGG</canonical>
            <polymorphic>TCAACGTTTTTAGTGTGTGACCGGTGTCAATTAAAATAGAGATTCGTCCCTCTAAATTCTAAAGAAGGAGAAGACACCCAACACTATCTTAATTTCAAATCTCTATGTGAACCGTTCGGAGTGGAAGAAAAGTTCGCCTCTCTGCCCACAAATTGACACTATCGCCAAGTTCGATCTTTTCTTTTGATTTGTGAAGCGATGCGAGCGGACAGGTGACACGACAAAAAAGGTTTCGGGTGAAGTGGTAGAGAACGCATAAATTGGTAGAACAGAGTTAGGAAATTGAAATTAGGGACTGACAAGTTACCGTAAACTCTAATAGAATGATTTCCTAATTTTCAACTTTGAGCCAATTTATCTCAGTTCTTGTTGAAGTTACCAAAAAGTGTCCAACAGACAAAATGTTCATCAAATTATCATAAATATTTTGTCGGTTAATCACTTCTTTATATCTTTTACAGGGACCGAGATAAATTGGCTCAACGTTGAAAGGGGCATTYTATCAGAGTGAGTCTGCTAGGATGGAAAGTTTAAGCATAACTTGTTTCAAAATTGGAATTTCTGTTTAGATCAAAATGATATACAAAATGATATCTGATTCCACTATATTCAAATTTCAAGTTTCGAGCCAGTTGCCCTAAAAAAGCCCGGTTGATTTTGGGTCATCCGGACCGGCAGAATGGCTATTTTAGGGCCTTTGACTCAAAACGCAGTATGCATTTCCATCCAGTAGAGTTAGATATCATTCTGTAGATCTTGTTAAGTTCTATATTTTACTTTTCGATTCAAATTGAAATTCCAATTTTGAACCGAATTGTGCGCCGGCCCGATTAACAAGTATGGATTACGGTAATTCAGAAAGTTGTTTTCAGTTTTCAGTTGGTTTTGCACAGAAGATCAGGTTACTGTAATTTCTATTCTCTATAATGAAGATCCCCACATTCTACACTCGGATGGGCAAGATTCCCAAATGATGGGCAAGATTTGCTCTACAGATGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAATTAGGGACTGACAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TTCCAATTTTGAAACAAGTTATG</pcr_primer_p2>
		<pcr_amplicon_size>275</pcr_amplicon_size>
		<canonical_amplicon>TGAAATTAGGGACTGACAAGTTACCGTAAACTCTAATAGAATGATTTCCTAATTTTCAACTTTGAGCCAATTTATCTCAGTTCTTGTTGAAGTTACCAAAAAGTGTCCAACAGACAAAATGTTCATCAAATTATCATAAATATTTTGTCGGTTAATCACTTCTTTATATCTTTTACAGGGACCGAGATAAATTGGCTCAACGTTGAAAGGGGCATTTTATCAGAGTGAGTCTGCTAGGATGGAAAGTTTAAGCATAACTTGTTTCAAAATTGGAA</canonical_amplicon>
		<polymorphic_amplicon>TGAAATTAGGGACTGACAAGTTACCGTAAACTCTAATAGAATGATTTCCTAATTTTCAACTTTGAGCCAATTTATCTCAGTTCTTGTTGAAGTTACCAAAAAGTGTCCAACAGACAAAATGTTCATCAAATTATCATAAATATTTTGTCGGTTAATCACTTCTTTATATCTTTTACAGGGACCGAGATAAATTGGCTCAACGTTGAAAGGGGCATTYTATCAGAGTGAGTCTGCTAGGATGGAAAGTTTAAGCATAACTTGTTTCAAAATTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33918</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>218150</contig_pos>
        <strand></strand>
        <context>tagagcttca[A/C]ttctgtagtt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCAATAAGATTGAAACTTTGTGAGTATATGAAACAAAAATAGAGCTTCA</left_flank>
        <right_flank>TTCTGTAGTTGACAACTTTTTTGTGACTTTCCATTCAAGCTAGATACAAG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAAATTACCGTATCCACCGTAATAGAGCCAGATTACCTTAAGCTCAATTATCTCATCTTCTATAAAAGATATCGAAATGTTGTCAACTGATAAACTGCTTATCATGTTATCGAAAACATTTTTGCAGTTTACAGTTTTTGATATCTCTTACAGGGACCGAAATAATTGAGCTCAACGCGCAAGTATAGGTTGCGACCACAGAAAAAGGGGCGGAGCCTATTTTTGCCTGTTTTAAGGTCTGTAACTATGTCTGGAAAAGCAGGACCAATATGAAAATTTGTGTCCATATGTAATCAACTACGTAGAATTCAATTATTTAGTTGTTTTTTTTTCAGAAAAAAAAGAACCGAAAAAGAAAAATCCCAAAAACACTGGCGAGTGGCAGGATACTGTATAGGCATGGGATTTAAAATTAGAACTAGGTCAACTTTAGGTGCTTATAACTAATCCAATAAGATTGAAACTTTGTGAGTATATGAAACAAAAATAGAGCTTCAATTCTGTAGTTGACAACTTTTTTGTGACTTTCCATTCAAGCTAGATACAAGGGTTTTGAAGAACTTACCGTAAACACTAATATAATAGGAACCCAACCAAGCTGTCAGCTTTAAGCTCAATTATCTCGGTTCGTGTGAGAGACATCAAGATGTGGTAAATTGATAAATATTGCTGATAATATGATAAATGTTGCATTAGTTGACAAAATTTTGATATCTTTCAAAGGAGCTGAGATAATTGAGATCGAAGTTTGAGCTTCTATTGGAGAGTCTGTTTGTGCATTTACGGTAAATTTGAAGCTCCATATTTTTTCTATAACAAATTTTACCATAATGTGACTAAATACGAAGTTGATGCTCTATTTTTGCGTAGTACACTCACAAAATGTGAGCTGAATCTGACAAGTTCGTAACCCTTTTTAACTAACTTGAAAGTGGCACAACTTACCAACTTATGTTGCTTCTTTGAAATCATATCGTTAGTGGTAATGTACAATTTTT</canonical>
            <polymorphic>TGAAAATTACCGTATCCACCGTAATAGAGCCAGATTACCTTAAGCTCAATTATCTCATCTTCTATAAAAGATATCGAAATGTTGTCAACTGATAAACTGCTTATCATGTTATCGAAAACATTTTTGCAGTTTACAGTTTTTGATATCTCTTACAGGGACCGAAATAATTGAGCTCAACGCGCAAGTATAGGTTGCGACCACAGAAAAAGGGGCGGAGCCTATTTTTGCCTGTTTTAAGGTCTGTAACTATGTCTGGAAAAGCAGGACCAATATGAAAATTTGTGTCCATATGTAATCAACTACGTAGAATTCAATTATTTAGTTGTTTTTTTTTCAGAAAAAAAAGAACCGAAAAAGAAAAATCCCAAAAACACTGGCGAGTGGCAGGATACTGTATAGGCATGGGATTTAAAATTAGAACTAGGTCAACTTTAGGTGCTTATAACTAATCCAATAAGATTGAAACTTTGTGAGTATATGAAACAAAAATAGAGCTTCAMTTCTGTAGTTGACAACTTTTTTGTGACTTTCCATTCAAGCTAGATACAAGGGTTTTGAAGAACTTACCGTAAACACTAATATAATAGGAACCCAACCAAGCTGTCAGCTTTAAGCTCAATTATCTCGGTTCGTGTGAGAGACATCAAGATGTGGTAAATTGATAAATATTGCTGATAATATGATAAATGTTGCATTAGTTGACAAAATTTTGATATCTTTCAAAGGAGCTGAGATAATTGAGATCGAAGTTTGAGCTTCTATTGGAGAGTCTGTTTGTGCATTTACGGTAAATTTGAAGCTCCATATTTTTTCTATAACAAATTTTACCATAATGTGACTAAATACGAAGTTGATGCTCTATTTTTGCGTAGTACACTCACAAAATGTGAGCTGAATCTGACAAGTTCGTAACCCTTTTTAACTAACTTGAAAGTGGCACAACTTACCAACTTATGTTGCTTCTTTGAAATCATATCGTTAGTGGTAATGTACAATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>173 119 118 111 100 86 55 49 43 39 31 30 30 7 5 4</canonical_bands>
                <polymorphic_bands>205 173 118 111 100 55 49 43 39 31 30 30 7 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAATCCCAAAAACACTG</pcr_primer_p1>
		<pcr_primer_p2>AGTTCTTCAAAACCCTTGTATCT</pcr_primer_p2>
		<pcr_amplicon_size>208</pcr_amplicon_size>
		<canonical_amplicon>GAAAAATCCCAAAAACACTGGCGAGTGGCAGGATACTGTATAGGCATGGGATTTAAAATTAGAACTAGGTCAACTTTAGGTGCTTATAACTAATCCAATAAGATTGAAACTTTGTGAGTATATGAAACAAAAATAGAGCTTCAATTCTGTAGTTGACAACTTTTTTGTGACTTTCCATTCAAGCTAGATACAAGGGTTTTGAAGAACT</canonical_amplicon>
		<polymorphic_amplicon>GAAAAATCCCAAAAACACTGGCGAGTGGCAGGATACTGTATAGGCATGGGATTTAAAATTAGAACTAGGTCAACTTTAGGTGCTTATAACTAATCCAATAAGATTGAAACTTTGTGAGTATATGAAACAAAAATAGAGCTTCAMTTCTGTAGTTGACAACTTTTTTGTGACTTTCCATTCAAGCTAGATACAAGGGTTTTGAAGAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33919</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>218233</contig_pos>
        <strand></strand>
        <context>acactaatat[A/T]ataggaaccc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTCAAGCTAGATACAAGGGTTTTGAAGAACTTACCGTAAACACTAATAT</left_flank>
        <right_flank>ATAGGAACCCAACCAAGCTGTCAGCTTTAAGCTCAATTATCTCGGTTCGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCAACTGATAAACTGCTTATCATGTTATCGAAAACATTTTTGCAGTTTACAGTTTTTGATATCTCTTACAGGGACCGAAATAATTGAGCTCAACGCGCAAGTATAGGTTGCGACCACAGAAAAAGGGGCGGAGCCTATTTTTGCCTGTTTTAAGGTCTGTAACTATGTCTGGAAAAGCAGGACCAATATGAAAATTTGTGTCCATATGTAATCAACTACGTAGAATTCAATTATTTAGTTGTTTTTTTTTCAGAAAAAAAAGAACCGAAAAAGAAAAATCCCAAAAACACTGGCGAGTGGCAGGATACTGTATAGGCATGGGATTTAAAATTAGAACTAGGTCAACTTTAGGTGCTTATAACTAATCCAATAAGATTGAAACTTTGTGAGTATATGAAACAAAAATAGAGCTTCAATTCTGTAGTTGACAACTTTTTTGTGACTTTCCATTCAAGCTAGATACAAGGGTTTTGAAGAACTTACCGTAAACACTAATATAATAGGAACCCAACCAAGCTGTCAGCTTTAAGCTCAATTATCTCGGTTCGTGTGAGAGACATCAAGATGTGGTAAATTGATAAATATTGCTGATAATATGATAAATGTTGCATTAGTTGACAAAATTTTGATATCTTTCAAAGGAGCTGAGATAATTGAGATCGAAGTTTGAGCTTCTATTGGAGAGTCTGTTTGTGCATTTACGGTAAATTTGAAGCTCCATATTTTTTCTATAACAAATTTTACCATAATGTGACTAAATACGAAGTTGATGCTCTATTTTTGCGTAGTACACTCACAAAATGTGAGCTGAATCTGACAAGTTCGTAACCCTTTTTAACTAACTTGAAAGTGGCACAACTTACCAACTTATGTTGCTTCTTTGAAATCATATCGTTAGTGGTAATGTACAATTTTTGGACCAGCGAGATGAGTGCCGGAATGTTGGTTTCCCTTTTTATTTGCTGAAAAAAAACTAGTTTTTTTCTCAAAAATTCCAAG</canonical>
            <polymorphic>GTCAACTGATAAACTGCTTATCATGTTATCGAAAACATTTTTGCAGTTTACAGTTTTTGATATCTCTTACAGGGACCGAAATAATTGAGCTCAACGCGCAAGTATAGGTTGCGACCACAGAAAAAGGGGCGGAGCCTATTTTTGCCTGTTTTAAGGTCTGTAACTATGTCTGGAAAAGCAGGACCAATATGAAAATTTGTGTCCATATGTAATCAACTACGTAGAATTCAATTATTTAGTTGTTTTTTTTTCAGAAAAAAAAGAACCGAAAAAGAAAAATCCCAAAAACACTGGCGAGTGGCAGGATACTGTATAGGCATGGGATTTAAAATTAGAACTAGGTCAACTTTAGGTGCTTATAACTAATCCAATAAGATTGAAACTTTGTGAGTATATGAAACAAAAATAGAGCTTCAATTCTGTAGTTGACAACTTTTTTGTGACTTTCCATTCAAGCTAGATACAAGGGTTTTGAAGAACTTACCGTAAACACTAATATWATAGGAACCCAACCAAGCTGTCAGCTTTAAGCTCAATTATCTCGGTTCGTGTGAGAGACATCAAGATGTGGTAAATTGATAAATATTGCTGATAATATGATAAATGTTGCATTAGTTGACAAAATTTTGATATCTTTCAAAGGAGCTGAGATAATTGAGATCGAAGTTTGAGCTTCTATTGGAGAGTCTGTTTGTGCATTTACGGTAAATTTGAAGCTCCATATTTTTTCTATAACAAATTTTACCATAATGTGACTAAATACGAAGTTGATGCTCTATTTTTGCGTAGTACACTCACAAAATGTGAGCTGAATCTGACAAGTTCGTAACCCTTTTTAACTAACTTGAAAGTGGCACAACTTACCAACTTATGTTGCTTCTTTGAAATCATATCGTTAGTGGTAATGTACAATTTTTGGACCAGCGAGATGAGTGCCGGAATGTTGGTTTCCCTTTTTATTTGCTGAAAAAAAACTAGTTTTTTTCTCAAAAATTCCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTCCATTCAAGCTAGATACA</pcr_primer_p1>
		<pcr_primer_p2>AACAGACTCTCCAATAGAAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTTCCATTCAAGCTAGATACAAGGGTTTTGAAGAACTTACCGTAAACACTAATATAATAGGAACCCAACCAAGCTGTCAGCTTTAAGCTCAATTATCTCGGTTCGTGTGAGAGACATCAAGATGTGGTAAATTGATAAATATTGCTGATAATATGATAAATGTTGCATTAGTTGACAAAATTTTGATATCTTTCAAAGGAGCTGAGATAATTGAGATCGAAGTTTGAGCTTCTATTGGAGAGTCTGTT</canonical_amplicon>
		<polymorphic_amplicon>ACTTTCCATTCAAGCTAGATACAAGGGTTTTGAAGAACTTACCGTAAACACTAATATWATAGGAACCCAACCAAGCTGTCAGCTTTAAGCTCAATTATCTCGGTTCGTGTGAGAGACATCAAGATGTGGTAAATTGATAAATATTGCTGATAATATGATAAATGTTGCATTAGTTGACAAAATTTTGATATCTTTCAAAGGAGCTGAGATAATTGAGATCGAAGTTTGAGCTTCTATTGGAGAGTCTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33920</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>218252</contig_pos>
        <strand></strand>
        <context>ccaaccaagc[T/C]gtcagcttta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTTTTGAAGAACTTACCGTAAACACTAATATAATAGGAACCCAACCAAGC</left_flank>
        <right_flank>GTCAGCTTTAAGCTCAATTATCTCGGTTCGTGTGAGAGACATCAAGATGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCATGTTATCGAAAACATTTTTGCAGTTTACAGTTTTTGATATCTCTTACAGGGACCGAAATAATTGAGCTCAACGCGCAAGTATAGGTTGCGACCACAGAAAAAGGGGCGGAGCCTATTTTTGCCTGTTTTAAGGTCTGTAACTATGTCTGGAAAAGCAGGACCAATATGAAAATTTGTGTCCATATGTAATCAACTACGTAGAATTCAATTATTTAGTTGTTTTTTTTTCAGAAAAAAAAGAACCGAAAAAGAAAAATCCCAAAAACACTGGCGAGTGGCAGGATACTGTATAGGCATGGGATTTAAAATTAGAACTAGGTCAACTTTAGGTGCTTATAACTAATCCAATAAGATTGAAACTTTGTGAGTATATGAAACAAAAATAGAGCTTCAATTCTGTAGTTGACAACTTTTTTGTGACTTTCCATTCAAGCTAGATACAAGGGTTTTGAAGAACTTACCGTAAACACTAATATAATAGGAACCCAACCAAGCTGTCAGCTTTAAGCTCAATTATCTCGGTTCGTGTGAGAGACATCAAGATGTGGTAAATTGATAAATATTGCTGATAATATGATAAATGTTGCATTAGTTGACAAAATTTTGATATCTTTCAAAGGAGCTGAGATAATTGAGATCGAAGTTTGAGCTTCTATTGGAGAGTCTGTTTGTGCATTTACGGTAAATTTGAAGCTCCATATTTTTTCTATAACAAATTTTACCATAATGTGACTAAATACGAAGTTGATGCTCTATTTTTGCGTAGTACACTCACAAAATGTGAGCTGAATCTGACAAGTTCGTAACCCTTTTTAACTAACTTGAAAGTGGCACAACTTACCAACTTATGTTGCTTCTTTGAAATCATATCGTTAGTGGTAATGTACAATTTTTGGACCAGCGAGATGAGTGCCGGAATGTTGGTTTCCCTTTTTATTTGCTGAAAAAAAACTAGTTTTTTTCTCAAAAATTCCAAGAAAACCAACCGCCGCAACA</canonical>
            <polymorphic>ATCATGTTATCGAAAACATTTTTGCAGTTTACAGTTTTTGATATCTCTTACAGGGACCGAAATAATTGAGCTCAACGCGCAAGTATAGGTTGCGACCACAGAAAAAGGGGCGGAGCCTATTTTTGCCTGTTTTAAGGTCTGTAACTATGTCTGGAAAAGCAGGACCAATATGAAAATTTGTGTCCATATGTAATCAACTACGTAGAATTCAATTATTTAGTTGTTTTTTTTTCAGAAAAAAAAGAACCGAAAAAGAAAAATCCCAAAAACACTGGCGAGTGGCAGGATACTGTATAGGCATGGGATTTAAAATTAGAACTAGGTCAACTTTAGGTGCTTATAACTAATCCAATAAGATTGAAACTTTGTGAGTATATGAAACAAAAATAGAGCTTCAATTCTGTAGTTGACAACTTTTTTGTGACTTTCCATTCAAGCTAGATACAAGGGTTTTGAAGAACTTACCGTAAACACTAATATAATAGGAACCCAACCAAGCYGTCAGCTTTAAGCTCAATTATCTCGGTTCGTGTGAGAGACATCAAGATGTGGTAAATTGATAAATATTGCTGATAATATGATAAATGTTGCATTAGTTGACAAAATTTTGATATCTTTCAAAGGAGCTGAGATAATTGAGATCGAAGTTTGAGCTTCTATTGGAGAGTCTGTTTGTGCATTTACGGTAAATTTGAAGCTCCATATTTTTTCTATAACAAATTTTACCATAATGTGACTAAATACGAAGTTGATGCTCTATTTTTGCGTAGTACACTCACAAAATGTGAGCTGAATCTGACAAGTTCGTAACCCTTTTTAACTAACTTGAAAGTGGCACAACTTACCAACTTATGTTGCTTCTTTGAAATCATATCGTTAGTGGTAATGTACAATTTTTGGACCAGCGAGATGAGTGCCGGAATGTTGGTTTCCCTTTTTATTTGCTGAAAAAAAACTAGTTTTTTTCTCAAAAATTCCAAGAAAACCAACCGCCGCAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>322 211 114 92 70 61 45 44 27 7 7</canonical_bands>
                <polymorphic_bands>322 211 114 92 70 68 45 44 27 7</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>277 211 114 92 70 61 45 45 44 27 7 7</canonical_bands>
                <polymorphic_bands>277 211 114 92 70 68 45 45 44 27 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTTCCATTCAAGCTAGATACA</pcr_primer_p1>
		<pcr_primer_p2>AACAGACTCTCCAATAGAAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTTCCATTCAAGCTAGATACAAGGGTTTTGAAGAACTTACCGTAAACACTAATATAATAGGAACCCAACCAAGCTGTCAGCTTTAAGCTCAATTATCTCGGTTCGTGTGAGAGACATCAAGATGTGGTAAATTGATAAATATTGCTGATAATATGATAAATGTTGCATTAGTTGACAAAATTTTGATATCTTTCAAAGGAGCTGAGATAATTGAGATCGAAGTTTGAGCTTCTATTGGAGAGTCTGTT</canonical_amplicon>
		<polymorphic_amplicon>ACTTTCCATTCAAGCTAGATACAAGGGTTTTGAAGAACTTACCGTAAACACTAATATAATAGGAACCCAACCAAGCYGTCAGCTTTAAGCTCAATTATCTCGGTTCGTGTGAGAGACATCAAGATGTGGTAAATTGATAAATATTGCTGATAATATGATAAATGTTGCATTAGTTGACAAAATTTTGATATCTTTCAAAGGAGCTGAGATAATTGAGATCGAAGTTTGAGCTTCTATTGGAGAGTCTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33921</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>218309</contig_pos>
        <strand></strand>
        <context>atgtggtaaa[T/C]tgataaatat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTAAGCTCAATTATCTCGGTTCGTGTGAGAGACATCAAGATGTGGTAAA</left_flank>
        <right_flank>TGATAAATATTGCTGATAATATGATAAATGTTGCATTAGTTGACAAAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAAATAATTGAGCTCAACGCGCAAGTATAGGTTGCGACCACAGAAAAAGGGGCGGAGCCTATTTTTGCCTGTTTTAAGGTCTGTAACTATGTCTGGAAAAGCAGGACCAATATGAAAATTTGTGTCCATATGTAATCAACTACGTAGAATTCAATTATTTAGTTGTTTTTTTTTCAGAAAAAAAAGAACCGAAAAAGAAAAATCCCAAAAACACTGGCGAGTGGCAGGATACTGTATAGGCATGGGATTTAAAATTAGAACTAGGTCAACTTTAGGTGCTTATAACTAATCCAATAAGATTGAAACTTTGTGAGTATATGAAACAAAAATAGAGCTTCAATTCTGTAGTTGACAACTTTTTTGTGACTTTCCATTCAAGCTAGATACAAGGGTTTTGAAGAACTTACCGTAAACACTAATATAATAGGAACCCAACCAAGCTGTCAGCTTTAAGCTCAATTATCTCGGTTCGTGTGAGAGACATCAAGATGTGGTAAATTGATAAATATTGCTGATAATATGATAAATGTTGCATTAGTTGACAAAATTTTGATATCTTTCAAAGGAGCTGAGATAATTGAGATCGAAGTTTGAGCTTCTATTGGAGAGTCTGTTTGTGCATTTACGGTAAATTTGAAGCTCCATATTTTTTCTATAACAAATTTTACCATAATGTGACTAAATACGAAGTTGATGCTCTATTTTTGCGTAGTACACTCACAAAATGTGAGCTGAATCTGACAAGTTCGTAACCCTTTTTAACTAACTTGAAAGTGGCACAACTTACCAACTTATGTTGCTTCTTTGAAATCATATCGTTAGTGGTAATGTACAATTTTTGGACCAGCGAGATGAGTGCCGGAATGTTGGTTTCCCTTTTTATTTGCTGAAAAAAAACTAGTTTTTTTCTCAAAAATTCCAAGAAAACCAACCGCCGCAACAGGAAGAAGAATCTCCACCAGCAATCCCATGACCGCATGCTTCACATCCTTATCCTTC</canonical>
            <polymorphic>CGAAATAATTGAGCTCAACGCGCAAGTATAGGTTGCGACCACAGAAAAAGGGGCGGAGCCTATTTTTGCCTGTTTTAAGGTCTGTAACTATGTCTGGAAAAGCAGGACCAATATGAAAATTTGTGTCCATATGTAATCAACTACGTAGAATTCAATTATTTAGTTGTTTTTTTTTCAGAAAAAAAAGAACCGAAAAAGAAAAATCCCAAAAACACTGGCGAGTGGCAGGATACTGTATAGGCATGGGATTTAAAATTAGAACTAGGTCAACTTTAGGTGCTTATAACTAATCCAATAAGATTGAAACTTTGTGAGTATATGAAACAAAAATAGAGCTTCAATTCTGTAGTTGACAACTTTTTTGTGACTTTCCATTCAAGCTAGATACAAGGGTTTTGAAGAACTTACCGTAAACACTAATATAATAGGAACCCAACCAAGCTGTCAGCTTTAAGCTCAATTATCTCGGTTCGTGTGAGAGACATCAAGATGTGGTAAAYTGATAAATATTGCTGATAATATGATAAATGTTGCATTAGTTGACAAAATTTTGATATCTTTCAAAGGAGCTGAGATAATTGAGATCGAAGTTTGAGCTTCTATTGGAGAGTCTGTTTGTGCATTTACGGTAAATTTGAAGCTCCATATTTTTTCTATAACAAATTTTACCATAATGTGACTAAATACGAAGTTGATGCTCTATTTTTGCGTAGTACACTCACAAAATGTGAGCTGAATCTGACAAGTTCGTAACCCTTTTTAACTAACTTGAAAGTGGCACAACTTACCAACTTATGTTGCTTCTTTGAAATCATATCGTTAGTGGTAATGTACAATTTTTGGACCAGCGAGATGAGTGCCGGAATGTTGGTTTCCCTTTTTATTTGCTGAAAAAAAACTAGTTTTTTTCTCAAAAATTCCAAGAAAACCAACCGCCGCAACAGGAAGAAGAATCTCCACCAGCAATCCCATGACCGCATGCTTCACATCCTTATCCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>173 119 111 100 86 85 81 55 49 39 31 30 30 6 5</canonical_bands>
                <polymorphic_bands>173 119 111 100 88 86 85 81 55 31 30 30 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTTCCATTCAAGCTAGATACA</pcr_primer_p1>
		<pcr_primer_p2>AACAGACTCTCCAATAGAAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTTCCATTCAAGCTAGATACAAGGGTTTTGAAGAACTTACCGTAAACACTAATATAATAGGAACCCAACCAAGCTGTCAGCTTTAAGCTCAATTATCTCGGTTCGTGTGAGAGACATCAAGATGTGGTAAATTGATAAATATTGCTGATAATATGATAAATGTTGCATTAGTTGACAAAATTTTGATATCTTTCAAAGGAGCTGAGATAATTGAGATCGAAGTTTGAGCTTCTATTGGAGAGTCTGTT</canonical_amplicon>
		<polymorphic_amplicon>ACTTTCCATTCAAGCTAGATACAAGGGTTTTGAAGAACTTACCGTAAACACTAATATAATAGGAACCCAACCAAGCTGTCAGCTTTAAGCTCAATTATCTCGGTTCGTGTGAGAGACATCAAGATGTGGTAAAYTGATAAATATTGCTGATAATATGATAAATGTTGCATTAGTTGACAAAATTTTGATATCTTTCAAAGGAGCTGAGATAATTGAGATCGAAGTTTGAGCTTCTATTGGAGAGTCTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33922</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>218470</contig_pos>
        <strand></strand>
        <context>TTTCTATAAC[A/G]aattttacca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGTTTGTGCATTTACGGTAAATTTGAAGCTCCATATTTTTTCTATAAC</left_flank>
        <right_flank>AATTTTACCATAATGTGACTAAATACGAAGTTGATGCTCTATTTTTGCGT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTGTTTTTTTTTCAGAAAAAAAAGAACCGAAAAAGAAAAATCCCAAAAACACTGGCGAGTGGCAGGATACTGTATAGGCATGGGATTTAAAATTAGAACTAGGTCAACTTTAGGTGCTTATAACTAATCCAATAAGATTGAAACTTTGTGAGTATATGAAACAAAAATAGAGCTTCAATTCTGTAGTTGACAACTTTTTTGTGACTTTCCATTCAAGCTAGATACAAGGGTTTTGAAGAACTTACCGTAAACACTAATATAATAGGAACCCAACCAAGCTGTCAGCTTTAAGCTCAATTATCTCGGTTCGTGTGAGAGACATCAAGATGTGGTAAATTGATAAATATTGCTGATAATATGATAAATGTTGCATTAGTTGACAAAATTTTGATATCTTTCAAAGGAGCTGAGATAATTGAGATCGAAGTTTGAGCTTCTATTGGAGAGTCTGTTTGTGCATTTACGGTAAATTTGAAGCTCCATATTTTTTCTATAACAAATTTTACCATAATGTGACTAAATACGAAGTTGATGCTCTATTTTTGCGTAGTACACTCACAAAATGTGAGCTGAATCTGACAAGTTCGTAACCCTTTTTAACTAACTTGAAAGTGGCACAACTTACCAACTTATGTTGCTTCTTTGAAATCATATCGTTAGTGGTAATGTACAATTTTTGGACCAGCGAGATGAGTGCCGGAATGTTGGTTTCCCTTTTTATTTGCTGAAAAAAAACTAGTTTTTTTCTCAAAAATTCCAAGAAAACCAACCGCCGCAACAGGAAGAAGAATCTCCACCAGCAATCCCATGACCGCATGCTTCACATCCTTATCCTTCACTTCTAACAACAAACTTCCCAAATCGTCCAAGAATTTGAGTCCACTCTCAAAATCTTCCACTTGACTCGAGTTGATTCGAAGGAATTTCATCGACATGATAAGCGCGACAATTTGTTGAGCCGCAGTTTGTGAGACGTCTTTTTTGAGTTCCAGGATATG</canonical>
            <polymorphic>AGTTGTTTTTTTTTCAGAAAAAAAAGAACCGAAAAAGAAAAATCCCAAAAACACTGGCGAGTGGCAGGATACTGTATAGGCATGGGATTTAAAATTAGAACTAGGTCAACTTTAGGTGCTTATAACTAATCCAATAAGATTGAAACTTTGTGAGTATATGAAACAAAAATAGAGCTTCAATTCTGTAGTTGACAACTTTTTTGTGACTTTCCATTCAAGCTAGATACAAGGGTTTTGAAGAACTTACCGTAAACACTAATATAATAGGAACCCAACCAAGCTGTCAGCTTTAAGCTCAATTATCTCGGTTCGTGTGAGAGACATCAAGATGTGGTAAATTGATAAATATTGCTGATAATATGATAAATGTTGCATTAGTTGACAAAATTTTGATATCTTTCAAAGGAGCTGAGATAATTGAGATCGAAGTTTGAGCTTCTATTGGAGAGTCTGTTTGTGCATTTACGGTAAATTTGAAGCTCCATATTTTTTCTATAACRAATTTTACCATAATGTGACTAAATACGAAGTTGATGCTCTATTTTTGCGTAGTACACTCACAAAATGTGAGCTGAATCTGACAAGTTCGTAACCCTTTTTAACTAACTTGAAAGTGGCACAACTTACCAACTTATGTTGCTTCTTTGAAATCATATCGTTAGTGGTAATGTACAATTTTTGGACCAGCGAGATGAGTGCCGGAATGTTGGTTTCCCTTTTTATTTGCTGAAAAAAAACTAGTTTTTTTCTCAAAAATTCCAAGAAAACCAACCGCCGCAACAGGAAGAAGAATCTCCACCAGCAATCCCATGACCGCATGCTTCACATCCTTATCCTTCACTTCTAACAACAAACTTCCCAAATCGTCCAAGAATTTGAGTCCACTCTCAAAATCTTCCACTTGACTCGAGTTGATTCGAAGGAATTTCATCGACATGATAAGCGCGACAATTTGTTGAGCCGCAGTTTGTGAGACGTCTTTTTTGAGTTCCAGGATATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>385 254 118 85 77 51 30</canonical_bands>
                <polymorphic_bands>385 284 118 85 77 51</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCTTCTATTGGAGAGTCTGTTT</pcr_primer_p1>
		<pcr_primer_p2>GTCCAAAAATTGTACATTACCAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGCTTCTATTGGAGAGTCTGTTTGTGCATTTACGGTAAATTTGAAGCTCCATATTTTTTCTATAACAAATTTTACCATAATGTGACTAAATACGAAGTTGATGCTCTATTTTTGCGTAGTACACTCACAAAATGTGAGCTGAATCTGACAAGTTCGTAACCCTTTTTAACTAACTTGAAAGTGGCACAACTTACCAACTTATGTTGCTTCTTTGAAATCATATCGTTAGTGGTAATGTACAATTTTTGGAC</canonical_amplicon>
		<polymorphic_amplicon>AGCTTCTATTGGAGAGTCTGTTTGTGCATTTACGGTAAATTTGAAGCTCCATATTTTTTCTATAACRAATTTTACCATAATGTGACTAAATACGAAGTTGATGCTCTATTTTTGCGTAGTACACTCACAAAATGTGAGCTGAATCTGACAAGTTCGTAACCCTTTTTAACTAACTTGAAAGTGGCACAACTTACCAACTTATGTTGCTTCTTTGAAATCATATCGTTAGTGGTAATGTACAATTTTTGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33923</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>218558</contig_pos>
        <strand></strand>
        <context>ctgacaagtt[C/T]GTAACCCTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTATTTTTGCGTAGTACACTCACAAAATGTGAGCTGAATCTGACAAGTT</left_flank>
        <right_flank>GTAACCCTTTTTAACTAACTTGAAAGTGGCACAACTTACCAACTTATGTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAATTAGAACTAGGTCAACTTTAGGTGCTTATAACTAATCCAATAAGATTGAAACTTTGTGAGTATATGAAACAAAAATAGAGCTTCAATTCTGTAGTTGACAACTTTTTTGTGACTTTCCATTCAAGCTAGATACAAGGGTTTTGAAGAACTTACCGTAAACACTAATATAATAGGAACCCAACCAAGCTGTCAGCTTTAAGCTCAATTATCTCGGTTCGTGTGAGAGACATCAAGATGTGGTAAATTGATAAATATTGCTGATAATATGATAAATGTTGCATTAGTTGACAAAATTTTGATATCTTTCAAAGGAGCTGAGATAATTGAGATCGAAGTTTGAGCTTCTATTGGAGAGTCTGTTTGTGCATTTACGGTAAATTTGAAGCTCCATATTTTTTCTATAACAAATTTTACCATAATGTGACTAAATACGAAGTTGATGCTCTATTTTTGCGTAGTACACTCACAAAATGTGAGCTGAATCTGACAAGTTCGTAACCCTTTTTAACTAACTTGAAAGTGGCACAACTTACCAACTTATGTTGCTTCTTTGAAATCATATCGTTAGTGGTAATGTACAATTTTTGGACCAGCGAGATGAGTGCCGGAATGTTGGTTTCCCTTTTTATTTGCTGAAAAAAAACTAGTTTTTTTCTCAAAAATTCCAAGAAAACCAACCGCCGCAACAGGAAGAAGAATCTCCACCAGCAATCCCATGACCGCATGCTTCACATCCTTATCCTTCACTTCTAACAACAAACTTCCCAAATCGTCCAAGAATTTGAGTCCACTCTCAAAATCTTCCACTTGACTCGAGTTGATTCGAAGGAATTTCATCGACATGATAAGCGCGACAATTTGTTGAGCCGCAGTTTGTGAGACGTCTTTTTTGAGTTCCAGGATATGGGTCATGAAGATTCTAGAAGGAATTTTTGGCGGGAAATTTGAAATTTTTAATAATACCTATGAATATGAGTGAAATAGGTGCTCGAGA</canonical>
            <polymorphic>TTAAAATTAGAACTAGGTCAACTTTAGGTGCTTATAACTAATCCAATAAGATTGAAACTTTGTGAGTATATGAAACAAAAATAGAGCTTCAATTCTGTAGTTGACAACTTTTTTGTGACTTTCCATTCAAGCTAGATACAAGGGTTTTGAAGAACTTACCGTAAACACTAATATAATAGGAACCCAACCAAGCTGTCAGCTTTAAGCTCAATTATCTCGGTTCGTGTGAGAGACATCAAGATGTGGTAAATTGATAAATATTGCTGATAATATGATAAATGTTGCATTAGTTGACAAAATTTTGATATCTTTCAAAGGAGCTGAGATAATTGAGATCGAAGTTTGAGCTTCTATTGGAGAGTCTGTTTGTGCATTTACGGTAAATTTGAAGCTCCATATTTTTTCTATAACAAATTTTACCATAATGTGACTAAATACGAAGTTGATGCTCTATTTTTGCGTAGTACACTCACAAAATGTGAGCTGAATCTGACAAGTTYGTAACCCTTTTTAACTAACTTGAAAGTGGCACAACTTACCAACTTATGTTGCTTCTTTGAAATCATATCGTTAGTGGTAATGTACAATTTTTGGACCAGCGAGATGAGTGCCGGAATGTTGGTTTCCCTTTTTATTTGCTGAAAAAAAACTAGTTTTTTTCTCAAAAATTCCAAGAAAACCAACCGCCGCAACAGGAAGAAGAATCTCCACCAGCAATCCCATGACCGCATGCTTCACATCCTTATCCTTCACTTCTAACAACAAACTTCCCAAATCGTCCAAGAATTTGAGTCCACTCTCAAAATCTTCCACTTGACTCGAGTTGATTCGAAGGAATTTCATCGACATGATAAGCGCGACAATTTGTTGAGCCGCAGTTTGTGAGACGTCTTTTTTGAGTTCCAGGATATGGGTCATGAAGATTCTAGAAGGAATTTTTGGCGGGAAATTTGAAATTTTTAATAATACCTATGAATATGAGTGAAATAGGTGCTCGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTTCTATTGGAGAGTCTGTTT</pcr_primer_p1>
		<pcr_primer_p2>GTCCAAAAATTGTACATTACCAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGCTTCTATTGGAGAGTCTGTTTGTGCATTTACGGTAAATTTGAAGCTCCATATTTTTTCTATAACAAATTTTACCATAATGTGACTAAATACGAAGTTGATGCTCTATTTTTGCGTAGTACACTCACAAAATGTGAGCTGAATCTGACAAGTTCGTAACCCTTTTTAACTAACTTGAAAGTGGCACAACTTACCAACTTATGTTGCTTCTTTGAAATCATATCGTTAGTGGTAATGTACAATTTTTGGAC</canonical_amplicon>
		<polymorphic_amplicon>AGCTTCTATTGGAGAGTCTGTTTGTGCATTTACGGTAAATTTGAAGCTCCATATTTTTTCTATAACAAATTTTACCATAATGTGACTAAATACGAAGTTGATGCTCTATTTTTGCGTAGTACACTCACAAAATGTGAGCTGAATCTGACAAGTTYGTAACCCTTTTTAACTAACTTGAAAGTGGCACAACTTACCAACTTATGTTGCTTCTTTGAAATCATATCGTTAGTGGTAATGTACAATTTTTGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33924</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>221320</contig_pos>
        <strand>+</strand>
        <context>tcgtttcggg[A/C]cctCAGAAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCAGGAAATTGGAAATTATTTTTTCCGACTACTGTAGTTTTCGTTTCGGG</left_flank>
        <right_flank>CCTCAGAAGGAGAAAAAATTGGCAAATTTTGAATTATTTTTCGGATCCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTCCTCTCCGTTTTCCTGCAATTTTCGCTGGGAAACCGTTAAAAAACCGAGAAAAAAAAATCAGTGAATAAATTAAAATTACTTTTAGGATACTGTAGTTTTCCTTTCGGGACCTTCAGTTTTTTTTGTTTGTCAGTCTAACACAATAAACTTTTTGTTTTTCTTAAATCGTAGCCGTGGGTCCGATACAAAACCATTAAAATTAACCATTTTCAGGCTACTGTAGTTCTTTTTCGAATTCCAATTTTTAATTTTACTCCATTTGCAGGCAATTTTTCCAAGTTGCAATTTTTGCTGAAAAATCGCCAAAAAAACCAGCAAAAAAAAAAATTAAGAAAATTCAAAATTTTTCTCAGGCTACTGTAGTTTTCGTTCCGGGACCTTCGCCTTATTTTTGTGCTTTTTCGACTTTTTTTGCTGGAAAATAGTCAAAAAACCGAGAAAAAATCAGGAAATTGGAAATTATTTTTTCCGACTACTGTAGTTTTCGTTTCGGGACCTCAGAAGGAGAAAAAATTGGCAAATTTTGAATTATTTTTCGGATCCTGTAGTTTTTGTTTTTCGGACAATTTTTCCGATTTATAATATTCTTCGGTGCTTTTTTCGATTTTTTTTGGTGTGAAATCGTTGAGAAAATCGAGAAAAAACCAGAAAATTTAAATTATTTCTCAGGCTACTGTAGTTTTCGTTTCGGGACCATCGGACATCAAATTTTTCTTTTTTTTTGGCATAAAAATTGATAATTAACAACTTTTTCGCACTTTTTTTTCAAAAAATCAAAGCTTCTATAAGAAAAATTTCTATAAATTTCGAAACCTAAATTAAAAAAAAATTTTACAATAAAATTTTAGAAAAAAAACGCACTTATCAGCTGTGGACCTCACTGTCAACGTTCCCGGATCACTTTTCCGCCGTCCCAGACGTCCTTTTTTAATTCCCGAGCTCATTTTTGTTGTTTCATATGAGCTCGAAAAATTGTTGTTTTTTTTTCAATTTAT</canonical>
            <polymorphic>CCTTCCTCTCCGTTTTCCTGCAATTTTCGCTGGGAAACCGTTAAAAAACCGAGAAAAAAAAATCAGTGAATAAATTAAAATTACTTTTAGGATACTGTAGTTTTCCTTTCGGGACCTTCAGTTTTTTTTGTTTGTCAGTCTAACACAATAAACTTTTTGTTTTTCTTAAATCGTAGCCGTGGGTCCGATACAAAACCATTAAAATTAACCATTTTCAGGCTACTGTAGTTCTTTTTCGAATTCCAATTTTTAATTTTACTCCATTTGCAGGCAATTTTTCCAAGTTGCAATTTTTGCTGAAAAATCGCCAAAAAAACCAGCAAAAAAAAAAATTAAGAAAATTCAAAATTTTTCTCAGGCTACTGTAGTTTTCGTTCCGGGACCTTCGCCTTATTTTTGTGCTTTTTCGACTTTTTTTGCTGGAAAATAGTCAAAAAACCGAGAAAAAATCAGGAAATTGGAAATTATTTTTTCCGACTACTGTAGTTTTCGTTTCGGGMCCTCAGAAGGAGAAAAAATTGGCAAATTTTGAATTATTTTTCGGATCCTGTAGTTTTTGTTTTTCGGACAATTTTTCCGATTTATAATATTCTTCGGTGCTTTTTTCGATTTTTTTTGGTGTGAAATCGTTGAGAAAATCGAGAAAAAACCAGAAAATTTAAATTATTTCTCAGGCTACTGTAGTTTTCGTTTCGGGACCATCGGACATCAAATTTTTCTTTTTTTTTGGCATAAAAATTGATAATTAACAACTTTTTCGCACTTTTTTTTCAAAAAATCAAAGCTTCTATAAGAAAAATTTCTATAAATTTCGAAACCTAAATTAAAAAAAAATTTTACAATAAAATTTTAGAAAAAAAACGCACTTATCAGCTGTGGACCTCACTGTCAACGTTCCCGGATCACTTTTCCGCCGTCCCAGACGTCCTTTTTTAATTCCCGAGCTCATTTTTGTTGTTTCATATGAGCTCGAAAAATTGTTGTTTTTTTTTCAATTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>198 198 182 122 118 112 70</canonical_bands>
                <polymorphic_bands>316 198 182 122 112 70</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>341 245 144 110 61 54 45</canonical_bands>
                <polymorphic_bands>341 245 189 110 61 54</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>502 268 118 112</canonical_bands>
                <polymorphic_bands>620 268 112</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGCTGGAAAATAGTCAA</pcr_primer_p1>
		<pcr_primer_p2>CGAAGAATATTATAAATCGGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>183</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGCTGGAAAATAGTCAAAAAACCGAGAAAAAATCAGGAAATTGGAAATTATTTTTTCCGACTACTGTAGTTTTCGTTTCGGGACCTCAGAAGGAGAAAAAATTGGCAAATTTTGAATTATTTTTCGGATCCTGTAGTTTTTGTTTTTCGGACAATTTTTCCGATTTATAATATTCTTCG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGCTGGAAAATAGTCAAAAAACCGAGAAAAAATCAGGAAATTGGAAATTATTTTTTCCGACTACTGTAGTTTTCGTTTCGGGMCCTCAGAAGGAGAAAAAATTGGCAAATTTTGAATTATTTTTCGGATCCTGTAGTTTTTGTTTTTCGGACAATTTTTCCGATTTATAATATTCTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33925</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>221367</contig_pos>
        <strand></strand>
        <context>TTTTTCGGAT[C/A]CTGTAGTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GGGACCTCAGAAGGAGAAAAAATTGGCAAATTTTGAATTATTTTTCGGAT</left_flank>
        <right_flank>CTGTAGTTTTTGTTTTTCGGACAATTTTTCCGATTTATAATATTCTTCGG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCGAGAAAAAAAAATCAGTGAATAAATTAAAATTACTTTTAGGATACTGTAGTTTTCCTTTCGGGACCTTCAGTTTTTTTTGTTTGTCAGTCTAACACAATAAACTTTTTGTTTTTCTTAAATCGTAGCCGTGGGTCCGATACAAAACCATTAAAATTAACCATTTTCAGGCTACTGTAGTTCTTTTTCGAATTCCAATTTTTAATTTTACTCCATTTGCAGGCAATTTTTCCAAGTTGCAATTTTTGCTGAAAAATCGCCAAAAAAACCAGCAAAAAAAAAAATTAAGAAAATTCAAAATTTTTCTCAGGCTACTGTAGTTTTCGTTCCGGGACCTTCGCCTTATTTTTGTGCTTTTTCGACTTTTTTTGCTGGAAAATAGTCAAAAAACCGAGAAAAAATCAGGAAATTGGAAATTATTTTTTCCGACTACTGTAGTTTTCGTTTCGGGACCTCAGAAGGAGAAAAAATTGGCAAATTTTGAATTATTTTTCGGATCCTGTAGTTTTTGTTTTTCGGACAATTTTTCCGATTTATAATATTCTTCGGTGCTTTTTTCGATTTTTTTTGGTGTGAAATCGTTGAGAAAATCGAGAAAAAACCAGAAAATTTAAATTATTTCTCAGGCTACTGTAGTTTTCGTTTCGGGACCATCGGACATCAAATTTTTCTTTTTTTTTGGCATAAAAATTGATAATTAACAACTTTTTCGCACTTTTTTTTCAAAAAATCAAAGCTTCTATAAGAAAAATTTCTATAAATTTCGAAACCTAAATTAAAAAAAAATTTTACAATAAAATTTTAGAAAAAAAACGCACTTATCAGCTGTGGACCTCACTGTCAACGTTCCCGGATCACTTTTCCGCCGTCCCAGACGTCCTTTTTTAATTCCCGAGCTCATTTTTGTTGTTTCATATGAGCTCGAAAAATTGTTGTTTTTTTTTCAATTTATCTGAAATTTTTGGCAATTATCTATAATTATTTTATAAAGCTTTATTT</canonical>
            <polymorphic>ACCGAGAAAAAAAAATCAGTGAATAAATTAAAATTACTTTTAGGATACTGTAGTTTTCCTTTCGGGACCTTCAGTTTTTTTTGTTTGTCAGTCTAACACAATAAACTTTTTGTTTTTCTTAAATCGTAGCCGTGGGTCCGATACAAAACCATTAAAATTAACCATTTTCAGGCTACTGTAGTTCTTTTTCGAATTCCAATTTTTAATTTTACTCCATTTGCAGGCAATTTTTCCAAGTTGCAATTTTTGCTGAAAAATCGCCAAAAAAACCAGCAAAAAAAAAAATTAAGAAAATTCAAAATTTTTCTCAGGCTACTGTAGTTTTCGTTCCGGGACCTTCGCCTTATTTTTGTGCTTTTTCGACTTTTTTTGCTGGAAAATAGTCAAAAAACCGAGAAAAAATCAGGAAATTGGAAATTATTTTTTCCGACTACTGTAGTTTTCGTTTCGGGACCTCAGAAGGAGAAAAAATTGGCAAATTTTGAATTATTTTTCGGATMCTGTAGTTTTTGTTTTTCGGACAATTTTTCCGATTTATAATATTCTTCGGTGCTTTTTTCGATTTTTTTTGGTGTGAAATCGTTGAGAAAATCGAGAAAAAACCAGAAAATTTAAATTATTTCTCAGGCTACTGTAGTTTTCGTTTCGGGACCATCGGACATCAAATTTTTCTTTTTTTTTGGCATAAAAATTGATAATTAACAACTTTTTCGCACTTTTTTTTCAAAAAATCAAAGCTTCTATAAGAAAAATTTCTATAAATTTCGAAACCTAAATTAAAAAAAAATTTTACAATAAAATTTTAGAAAAAAAACGCACTTATCAGCTGTGGACCTCACTGTCAACGTTCCCGGATCACTTTTCCGCCGTCCCAGACGTCCTTTTTTAATTCCCGAGCTCATTTTTGTTGTTTCATATGAGCTCGAAAAATTGTTGTTTTTTTTTCAATTTATCTGAAATTTTTGGCAATTATCTATAATTATTTTATAAAGCTTTATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGATCC</site>
                <isoschizomers>
                    <enzyme>BamHI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>496 357 147</canonical_bands>
                <polymorphic_bands>853 147</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>350 198 152 118 70 66 46</canonical_bands>
                <polymorphic_bands>350 198 198 118 70 66</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGCTGGAAAATAGTCAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGTGCGAAAAAGTTGTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>353</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGCTGGAAAATAGTCAAAAAACCGAGAAAAAATCAGGAAATTGGAAATTATTTTTTCCGACTACTGTAGTTTTCGTTTCGGGACCTCAGAAGGAGAAAAAATTGGCAAATTTTGAATTATTTTTCGGATCCTGTAGTTTTTGTTTTTCGGACAATTTTTCCGATTTATAATATTCTTCGGTGCTTTTTTCGATTTTTTTTGGTGTGAAATCGTTGAGAAAATCGAGAAAAAACCAGAAAATTTAAATTATTTCTCAGGCTACTGTAGTTTTCGTTTCGGGACCATCGGACATCAAATTTTTCTTTTTTTTTGGCATAAAAATTGATAATTAACAACTTTTTCGCACTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGCTGGAAAATAGTCAAAAAACCGAGAAAAAATCAGGAAATTGGAAATTATTTTTTCCGACTACTGTAGTTTTCGTTTCGGGACCTCAGAAGGAGAAAAAATTGGCAAATTTTGAATTATTTTTCGGATMCTGTAGTTTTTGTTTTTCGGACAATTTTTCCGATTTATAATATTCTTCGGTGCTTTTTTCGATTTTTTTTGGTGTGAAATCGTTGAGAAAATCGAGAAAAAACCAGAAAATTTAAATTATTTCTCAGGCTACTGTAGTTTTCGTTTCGGGACCATCGGACATCAAATTTTTCTTTTTTTTTGGCATAAAAATTGATAATTAACAACTTTTTCGCACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33926</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>221490</contig_pos>
        <strand></strand>
        <context>taaattattt[C/T]tcaggctact</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTGAAATCGTTGAGAAAATCGAGAAAAAACCAGAAAATTTAAATTATTT</left_flank>
        <right_flank>TCAGGCTACTGTAGTTTTCGTTTCGGGACCATCGGACATCAAATTTTTCT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGTAGCCGTGGGTCCGATACAAAACCATTAAAATTAACCATTTTCAGGCTACTGTAGTTCTTTTTCGAATTCCAATTTTTAATTTTACTCCATTTGCAGGCAATTTTTCCAAGTTGCAATTTTTGCTGAAAAATCGCCAAAAAAACCAGCAAAAAAAAAAATTAAGAAAATTCAAAATTTTTCTCAGGCTACTGTAGTTTTCGTTCCGGGACCTTCGCCTTATTTTTGTGCTTTTTCGACTTTTTTTGCTGGAAAATAGTCAAAAAACCGAGAAAAAATCAGGAAATTGGAAATTATTTTTTCCGACTACTGTAGTTTTCGTTTCGGGACCTCAGAAGGAGAAAAAATTGGCAAATTTTGAATTATTTTTCGGATCCTGTAGTTTTTGTTTTTCGGACAATTTTTCCGATTTATAATATTCTTCGGTGCTTTTTTCGATTTTTTTTGGTGTGAAATCGTTGAGAAAATCGAGAAAAAACCAGAAAATTTAAATTATTTCTCAGGCTACTGTAGTTTTCGTTTCGGGACCATCGGACATCAAATTTTTCTTTTTTTTTGGCATAAAAATTGATAATTAACAACTTTTTCGCACTTTTTTTTCAAAAAATCAAAGCTTCTATAAGAAAAATTTCTATAAATTTCGAAACCTAAATTAAAAAAAAATTTTACAATAAAATTTTAGAAAAAAAACGCACTTATCAGCTGTGGACCTCACTGTCAACGTTCCCGGATCACTTTTCCGCCGTCCCAGACGTCCTTTTTTAATTCCCGAGCTCATTTTTGTTGTTTCATATGAGCTCGAAAAATTGTTGTTTTTTTTTCAATTTATCTGAAATTTTTGGCAATTATCTATAATTATTTTATAAAGCTTTATTTATAAAGAAAAAATGGAAGAACTATATTTTTAAAATCACTAAAATAAATGAAAATTGTTTTTCGAAAATTTATCTGAAATTTGAGCAATATTCTATAATTATTCTATTCAGCAAAATCAAGAAA</canonical>
            <polymorphic>TCGTAGCCGTGGGTCCGATACAAAACCATTAAAATTAACCATTTTCAGGCTACTGTAGTTCTTTTTCGAATTCCAATTTTTAATTTTACTCCATTTGCAGGCAATTTTTCCAAGTTGCAATTTTTGCTGAAAAATCGCCAAAAAAACCAGCAAAAAAAAAAATTAAGAAAATTCAAAATTTTTCTCAGGCTACTGTAGTTTTCGTTCCGGGACCTTCGCCTTATTTTTGTGCTTTTTCGACTTTTTTTGCTGGAAAATAGTCAAAAAACCGAGAAAAAATCAGGAAATTGGAAATTATTTTTTCCGACTACTGTAGTTTTCGTTTCGGGACCTCAGAAGGAGAAAAAATTGGCAAATTTTGAATTATTTTTCGGATCCTGTAGTTTTTGTTTTTCGGACAATTTTTCCGATTTATAATATTCTTCGGTGCTTTTTTCGATTTTTTTTGGTGTGAAATCGTTGAGAAAATCGAGAAAAAACCAGAAAATTTAAATTATTTYTCAGGCTACTGTAGTTTTCGTTTCGGGACCATCGGACATCAAATTTTTCTTTTTTTTTGGCATAAAAATTGATAATTAACAACTTTTTCGCACTTTTTTTTCAAAAAATCAAAGCTTCTATAAGAAAAATTTCTATAAATTTCGAAACCTAAATTAAAAAAAAATTTTACAATAAAATTTTAGAAAAAAAACGCACTTATCAGCTGTGGACCTCACTGTCAACGTTCCCGGATCACTTTTCCGCCGTCCCAGACGTCCTTTTTTAATTCCCGAGCTCATTTTTGTTGTTTCATATGAGCTCGAAAAATTGTTGTTTTTTTTTCAATTTATCTGAAATTTTTGGCAATTATCTATAATTATTTTATAAAGCTTTATTTATAAAGAAAAAATGGAAGAACTATATTTTTAAAATCACTAAAATAAATGAAAATTGTTTTTCGAAAATTTATCTGAAATTTGAGCAATATTCTATAATTATTCTATTCAGCAAAATCAAGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 184 168 148</canonical_bands>
                <polymorphic_bands>668 184 148</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGTTTTTGTTTTTCGGACAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTTATAGAAGCTTTGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAGTTTTTGTTTTTCGGACAATTTTTCCGATTTATAATATTCTTCGGTGCTTTTTTCGATTTTTTTTGGTGTGAAATCGTTGAGAAAATCGAGAAAAAACCAGAAAATTTAAATTATTTCTCAGGCTACTGTAGTTTTCGTTTCGGGACCATCGGACATCAAATTTTTCTTTTTTTTTGGCATAAAAATTGATAATTAACAACTTTTTCGCACTTTTTTTTCAAAAAATCAAAGCTTCTATAAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TAGTTTTTGTTTTTCGGACAATTTTTCCGATTTATAATATTCTTCGGTGCTTTTTTCGATTTTTTTTGGTGTGAAATCGTTGAGAAAATCGAGAAAAAACCAGAAAATTTAAATTATTTYTCAGGCTACTGTAGTTTTCGTTTCGGGACCATCGGACATCAAATTTTTCTTTTTTTTTGGCATAAAAATTGATAATTAACAACTTTTTCGCACTTTTTTTTCAAAAAATCAAAGCTTCTATAAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33927</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>221646</contig_pos>
        <strand></strand>
        <context>AACCtaaatt[A/T]aaaaaaaatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATCAAAGCTTCTATAAGAAAAATTTCTATAAATTTCGAAACCTAAATT</left_flank>
        <right_flank>AAAAAAAATTTTACAATAAAATTTTAGAAAAAAAACGCACTTATCAGCTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAATTAAGAAAATTCAAAATTTTTCTCAGGCTACTGTAGTTTTCGTTCCGGGACCTTCGCCTTATTTTTGTGCTTTTTCGACTTTTTTTGCTGGAAAATAGTCAAAAAACCGAGAAAAAATCAGGAAATTGGAAATTATTTTTTCCGACTACTGTAGTTTTCGTTTCGGGACCTCAGAAGGAGAAAAAATTGGCAAATTTTGAATTATTTTTCGGATCCTGTAGTTTTTGTTTTTCGGACAATTTTTCCGATTTATAATATTCTTCGGTGCTTTTTTCGATTTTTTTTGGTGTGAAATCGTTGAGAAAATCGAGAAAAAACCAGAAAATTTAAATTATTTCTCAGGCTACTGTAGTTTTCGTTTCGGGACCATCGGACATCAAATTTTTCTTTTTTTTTGGCATAAAAATTGATAATTAACAACTTTTTCGCACTTTTTTTTCAAAAAATCAAAGCTTCTATAAGAAAAATTTCTATAAATTTCGAAACCTAAATTAAAAAAAAATTTTACAATAAAATTTTAGAAAAAAAACGCACTTATCAGCTGTGGACCTCACTGTCAACGTTCCCGGATCACTTTTCCGCCGTCCCAGACGTCCTTTTTTAATTCCCGAGCTCATTTTTGTTGTTTCATATGAGCTCGAAAAATTGTTGTTTTTTTTTCAATTTATCTGAAATTTTTGGCAATTATCTATAATTATTTTATAAAGCTTTATTTATAAAGAAAAAATGGAAGAACTATATTTTTAAAATCACTAAAATAAATGAAAATTGTTTTTCGAAAATTTATCTGAAATTTGAGCAATATTCTATAATTATTCTATTCAGCAAAATCAAGAAATTCAAAATTTCAAAATCACTAAAATAAAATTTCCCCGGTCCGCGGTCGATAGTGGCCGGCCGAGAGGGAGAGAGGGTATGAATTAGTCCACGAGACAGTGAATTGCCTCTATTTCTCCTCTAACAGTCTGCGTCTCTTCTTTTTCTCTCACTCTCG</canonical>
            <polymorphic>AAAAAATTAAGAAAATTCAAAATTTTTCTCAGGCTACTGTAGTTTTCGTTCCGGGACCTTCGCCTTATTTTTGTGCTTTTTCGACTTTTTTTGCTGGAAAATAGTCAAAAAACCGAGAAAAAATCAGGAAATTGGAAATTATTTTTTCCGACTACTGTAGTTTTCGTTTCGGGACCTCAGAAGGAGAAAAAATTGGCAAATTTTGAATTATTTTTCGGATCCTGTAGTTTTTGTTTTTCGGACAATTTTTCCGATTTATAATATTCTTCGGTGCTTTTTTCGATTTTTTTTGGTGTGAAATCGTTGAGAAAATCGAGAAAAAACCAGAAAATTTAAATTATTTCTCAGGCTACTGTAGTTTTCGTTTCGGGACCATCGGACATCAAATTTTTCTTTTTTTTTGGCATAAAAATTGATAATTAACAACTTTTTCGCACTTTTTTTTCAAAAAATCAAAGCTTCTATAAGAAAAATTTCTATAAATTTCGAAACCTAAATTWAAAAAAAATTTTACAATAAAATTTTAGAAAAAAAACGCACTTATCAGCTGTGGACCTCACTGTCAACGTTCCCGGATCACTTTTCCGCCGTCCCAGACGTCCTTTTTTAATTCCCGAGCTCATTTTTGTTGTTTCATATGAGCTCGAAAAATTGTTGTTTTTTTTTCAATTTATCTGAAATTTTTGGCAATTATCTATAATTATTTTATAAAGCTTTATTTATAAAGAAAAAATGGAAGAACTATATTTTTAAAATCACTAAAATAAATGAAAATTGTTTTTCGAAAATTTATCTGAAATTTGAGCAATATTCTATAATTATTCTATTCAGCAAAATCAAGAAATTCAAAATTTCAAAATCACTAAAATAAAATTTCCCCGGTCCGCGGTCGATAGTGGCCGGCCGAGAGGGAGAGAGGGTATGAATTAGTCCACGAGACAGTGAATTGCCTCTATTTCTCCTCTAACAGTCTGCGTCTCTTCTTTTTCTCTCACTCTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>326 250 143 109 87 78 7</canonical_bands>
                <polymorphic_bands>326 250 187 143 87 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATTAACAACTTTTTCGCACTT</pcr_primer_p1>
		<pcr_primer_p2>AGCTCATATGAAACAACAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>TAATTAACAACTTTTTCGCACTTTTTTTTCAAAAAATCAAAGCTTCTATAAGAAAAATTTCTATAAATTTCGAAACCTAAATTAAAAAAAAATTTTACAATAAAATTTTAGAAAAAAAACGCACTTATCAGCTGTGGACCTCACTGTCAACGTTCCCGGATCACTTTTCCGCCGTCCCAGACGTCCTTTTTTAATTCCCGAGCTCATTTTTGTTGTTTCATATGAGCT</canonical_amplicon>
		<polymorphic_amplicon>TAATTAACAACTTTTTCGCACTTTTTTTTCAAAAAATCAAAGCTTCTATAAGAAAAATTTCTATAAATTTCGAAACCTAAATTWAAAAAAAATTTTACAATAAAATTTTAGAAAAAAAACGCACTTATCAGCTGTGGACCTCACTGTCAACGTTCCCGGATCACTTTTCCGCCGTCCCAGACGTCCTTTTTTAATTCCCGAGCTCATTTTTGTTGTTTCATATGAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33928</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>221659</contig_pos>
        <strand></strand>
        <context>aaaaaatttt[A/C]caataaaatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATAAGAAAAATTTCTATAAATTTCGAAACCTAAATTAAAAAAAAATTTT</left_flank>
        <right_flank>CAATAAAATTTTAGAAAAAAAACGCACTTATCAGCTGTGGACCTCACTGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCAAAATTTTTCTCAGGCTACTGTAGTTTTCGTTCCGGGACCTTCGCCTTATTTTTGTGCTTTTTCGACTTTTTTTGCTGGAAAATAGTCAAAAAACCGAGAAAAAATCAGGAAATTGGAAATTATTTTTTCCGACTACTGTAGTTTTCGTTTCGGGACCTCAGAAGGAGAAAAAATTGGCAAATTTTGAATTATTTTTCGGATCCTGTAGTTTTTGTTTTTCGGACAATTTTTCCGATTTATAATATTCTTCGGTGCTTTTTTCGATTTTTTTTGGTGTGAAATCGTTGAGAAAATCGAGAAAAAACCAGAAAATTTAAATTATTTCTCAGGCTACTGTAGTTTTCGTTTCGGGACCATCGGACATCAAATTTTTCTTTTTTTTTGGCATAAAAATTGATAATTAACAACTTTTTCGCACTTTTTTTTCAAAAAATCAAAGCTTCTATAAGAAAAATTTCTATAAATTTCGAAACCTAAATTAAAAAAAAATTTTACAATAAAATTTTAGAAAAAAAACGCACTTATCAGCTGTGGACCTCACTGTCAACGTTCCCGGATCACTTTTCCGCCGTCCCAGACGTCCTTTTTTAATTCCCGAGCTCATTTTTGTTGTTTCATATGAGCTCGAAAAATTGTTGTTTTTTTTTCAATTTATCTGAAATTTTTGGCAATTATCTATAATTATTTTATAAAGCTTTATTTATAAAGAAAAAATGGAAGAACTATATTTTTAAAATCACTAAAATAAATGAAAATTGTTTTTCGAAAATTTATCTGAAATTTGAGCAATATTCTATAATTATTCTATTCAGCAAAATCAAGAAATTCAAAATTTCAAAATCACTAAAATAAAATTTCCCCGGTCCGCGGTCGATAGTGGCCGGCCGAGAGGGAGAGAGGGTATGAATTAGTCCACGAGACAGTGAATTGCCTCTATTTCTCCTCTAACAGTCTGCGTCTCTTCTTTTTCTCTCACTCTCGCTTAACGTGTCTA</canonical>
            <polymorphic>AATTCAAAATTTTTCTCAGGCTACTGTAGTTTTCGTTCCGGGACCTTCGCCTTATTTTTGTGCTTTTTCGACTTTTTTTGCTGGAAAATAGTCAAAAAACCGAGAAAAAATCAGGAAATTGGAAATTATTTTTTCCGACTACTGTAGTTTTCGTTTCGGGACCTCAGAAGGAGAAAAAATTGGCAAATTTTGAATTATTTTTCGGATCCTGTAGTTTTTGTTTTTCGGACAATTTTTCCGATTTATAATATTCTTCGGTGCTTTTTTCGATTTTTTTTGGTGTGAAATCGTTGAGAAAATCGAGAAAAAACCAGAAAATTTAAATTATTTCTCAGGCTACTGTAGTTTTCGTTTCGGGACCATCGGACATCAAATTTTTCTTTTTTTTTGGCATAAAAATTGATAATTAACAACTTTTTCGCACTTTTTTTTCAAAAAATCAAAGCTTCTATAAGAAAAATTTCTATAAATTTCGAAACCTAAATTAAAAAAAAATTTTMCAATAAAATTTTAGAAAAAAAACGCACTTATCAGCTGTGGACCTCACTGTCAACGTTCCCGGATCACTTTTCCGCCGTCCCAGACGTCCTTTTTTAATTCCCGAGCTCATTTTTGTTGTTTCATATGAGCTCGAAAAATTGTTGTTTTTTTTTCAATTTATCTGAAATTTTTGGCAATTATCTATAATTATTTTATAAAGCTTTATTTATAAAGAAAAAATGGAAGAACTATATTTTTAAAATCACTAAAATAAATGAAAATTGTTTTTCGAAAATTTATCTGAAATTTGAGCAATATTCTATAATTATTCTATTCAGCAAAATCAAGAAATTCAAAATTTCAAAATCACTAAAATAAAATTTCCCCGGTCCGCGGTCGATAGTGGCCGGCCGAGAGGGAGAGAGGGTATGAATTAGTCCACGAGACAGTGAATTGCCTCTATTTCTCCTCTAACAGTCTGCGTCTCTTCTTTTTCTCTCACTCTCGCTTAACGTGTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCAAAGCTTCTATAAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATAGATAATTGCCAAAAATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATCAAAGCTTCTATAAGAAAAATTTCTATAAATTTCGAAACCTAAATTAAAAAAAAATTTTACAATAAAATTTTAGAAAAAAAACGCACTTATCAGCTGTGGACCTCACTGTCAACGTTCCCGGATCACTTTTCCGCCGTCCCAGACGTCCTTTTTTAATTCCCGAGCTCATTTTTGTTGTTTCATATGAGCTCGAAAAATTGTTGTTTTTTTTTCAATTTATCTGAAATTTTTGGCAATTATCTAT</canonical_amplicon>
		<polymorphic_amplicon>AAAATCAAAGCTTCTATAAGAAAAATTTCTATAAATTTCGAAACCTAAATTAAAAAAAAATTTTMCAATAAAATTTTAGAAAAAAAACGCACTTATCAGCTGTGGACCTCACTGTCAACGTTCCCGGATCACTTTTCCGCCGTCCCAGACGTCCTTTTTTAATTCCCGAGCTCATTTTTGTTGTTTCATATGAGCTCGAAAAATTGTTGTTTTTTTTTCAATTTATCTGAAATTTTTGGCAATTATCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33929</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>226041</contig_pos>
        <strand>+</strand>
        <context>TTTCAAAATT[G/T]TCAGATATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTTTTCAGTTCTAAATTTTTATTTTTCATTCAATTGTTTTTCAAAATT</left_flank>
        <right_flank>TCAGATATTTTCAGCCGATAAAGAACGCAATTTATTTTATGACCGATAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTCTTTCGTCTCCCGCTCTCGTGTCTCCCGCTTTTGGGTGTCTCCCGGATTTGTACGGTCTCTCATTTTCGAAGGAAAAACCCAAAATTTAGTTTTTCCGGCATGTTCCTTTAAAGATTACGGTAGATTTCTAAAGGAACATGTTGCAAAGAGGATGGGTCTCGACGCGACACCGCCGGTTATGCATTTTTTTTCATTTTTTCAGATAATTTTCTCAGTTTTTTTGACAATTTTCACCGTTTTTTCGCCGATTTTCAACGTTCAAATTTATTATAACTCGAAAAAATGAATTTAAATTAAGAAATTCATCGAAAAAACGGTAAAAACTGTTTTTTCATAATTTTATCTCGATTTTTCAGATTTACATCGAAAAAACTGTGAAAATCGTCAAAAAATTAGAAAACTCACCTCTTTTCCGTATATGAAAAATCCAACGACTCCGAGCATCTTTTTTTCAGTTCTAAATTTTTATTTTTCATTCAATTGTTTTTCAAAATTTTCAGATATTTTCAGCCGATAAAGAACGCAATTTATTTTATGACCGATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCAGATTGAAAAACAAAAAAGGAAGCACACACACTGATTAAAGAGAACCATAATAATAATTTAAACAGGCAACAAAGAAAAAAGGATTATATTGAGCTAGAAAATTATTCAGCACTCGCTTCGAACTTTGGATACTTTGCCTGCGCATCACTCCATTGTTGCCGGCCACTGACCAGATCCGAAATCAGTCTTCCGAGCTCCGAGACCTCCAGCCGAATCTGCGACATTGTCTCCGCGTGGCGAATCGTCACAGTGTATGGAGTGGTCTTTCCGGATTCAAAGTCGACGGTGATACCGAATGGAATACCGATTTCGTCGGTACGAGCGTAGCGGCGACCGATGGTTCCAGAGCTGTCGTCCTGGAATGATATATTGATTTAAAAAGTGGAATATATGATCCTGGCTGGCATTTATAACT</canonical>
            <polymorphic>CCTCTTTCGTCTCCCGCTCTCGTGTCTCCCGCTTTTGGGTGTCTCCCGGATTTGTACGGTCTCTCATTTTCGAAGGAAAAACCCAAAATTTAGTTTTTCCGGCATGTTCCTTTAAAGATTACGGTAGATTTCTAAAGGAACATGTTGCAAAGAGGATGGGTCTCGACGCGACACCGCCGGTTATGCATTTTTTTTCATTTTTTCAGATAATTTTCTCAGTTTTTTTGACAATTTTCACCGTTTTTTCGCCGATTTTCAACGTTCAAATTTATTATAACTCGAAAAAATGAATTTAAATTAAGAAATTCATCGAAAAAACGGTAAAAACTGTTTTTTCATAATTTTATCTCGATTTTTCAGATTTACATCGAAAAAACTGTGAAAATCGTCAAAAAATTAGAAAACTCACCTCTTTTCCGTATATGAAAAATCCAACGACTCCGAGCATCTTTTTTTCAGTTCTAAATTTTTATTTTTCATTCAATTGTTTTTCAAAATTKTCAGATATTTTCAGCCGATAAAGAACGCAATTTATTTTATGACCGATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCAGATTGAAAAACAAAAAAGGAAGCACACACACTGATTAAAGAGAACCATAATAATAATTTAAACAGGCAACAAAGAAAAAAGGATTATATTGAGCTAGAAAATTATTCAGCACTCGCTTCGAACTTTGGATACTTTGCCTGCGCATCACTCCATTGTTGCCGGCCACTGACCAGATCCGAAATCAGTCTTCCGAGCTCCGAGACCTCCAGCCGAATCTGCGACATTGTCTCCGCGTGGCGAATCGTCACAGTGTATGGAGTGGTCTTTCCGGATTCAAAGTCGACGGTGATACCGAATGGAATACCGATTTCGTCGGTACGAGCGTAGCGGCGACCGATGGTTCCAGAGCTGTCGTCCTGGAATGATATATTGATTTAAAAAGTGGAATATATGATCCTGGCTGGCATTTATAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>447 179 161 86 58 31 24 14</canonical_bands>
                <polymorphic_bands>447 179 161 89 86 24 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATATGAAAAATCCAACGACTC</pcr_primer_p1>
		<pcr_primer_p2>TCTTTGTTGCCTGTTTAAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTATATGAAAAATCCAACGACTCCGAGCATCTTTTTTTCAGTTCTAAATTTTTATTTTTCATTCAATTGTTTTTCAAAATTTTCAGATATTTTCAGCCGATAAAGAACGCAATTTATTTTATGACCGATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCAGATTGAAAAACAAAAAAGGAAGCACACACACTGATTAAAGAGAACCATAATAATAATTTAAACAGGCAACAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GTATATGAAAAATCCAACGACTCCGAGCATCTTTTTTTCAGTTCTAAATTTTTATTTTTCATTCAATTGTTTTTCAAAATTKTCAGATATTTTCAGCCGATAAAGAACGCAATTTATTTTATGACCGATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCAGATTGAAAAACAAAAAAGGAAGCACACACACTGATTAAAGAGAACCATAATAATAATTTAAACAGGCAACAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33930</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>226376</contig_pos>
        <strand>+</strand>
        <context>AATCGTCACA[G/T]KGTATGGAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGACCTCCAGCCGAATCTGCGACATTGTCTCCGCGTGGCGAATCGTCACA</left_flank>
        <right_flank>TGTATGGAGTGGTCTTTCCGGATTCAAAGTCGACGGTGATACCGAATGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATAATTTTATCTCGATTTTTCAGATTTACATCGAAAAAACTGTGAAAATCGTCAAAAAATTAGAAAACTCACCTCTTTTCCGTATATGAAAAATCCAACGACTCCGAGCATCTTTTTTTCAGTTCTAAATTTTTATTTTTCATTCAATTGTTTTTCAAAATTTTCAGATATTTTCAGCCGATAAAGAACGCAATTTATTTTATGACCGATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCAGATTGAAAAACAAAAAAGGAAGCACACACACTGATTAAAGAGAACCATAATAATAATTTAAACAGGCAACAAAGAAAAAAGGATTATATTGAGCTAGAAAATTATTCAGCACTCGCTTCGAACTTTGGATACTTTGCCTGCGCATCACTCCATTGTTGCCGGCCACTGACCAGATCCGAAATCAGTCTTCCGAGCTCCGAGACCTCCAGCCGAATCTGCGACATTGTCTCCGCGTGGCGAATCGTCACAGTGTATGGAGTGGTCTTTCCGGATTCAAAGTCGACGGTGATACCGAATGGAATACCGATTTCGTCGGTACGAGCGTAGCGGCGACCGATGGTTCCAGAGCTGTCGTCCTGGAATGATATATTGATTTAAAAAGTGGAATATATGATCCTGGCTGGCATTTATAACTCTGACAGCCTCTGACCCCTACTTACCACTTTGTAGCTAAGCTCATAGTGAGAAAGCTCCTCCTTAACAGCATCCATCACTGGTACCAACGTATCATTGGCAGAAATCGGGAGAATTGAGCACTTGATAGGGGCGACGAGTGGCTTGAATGCCAAGAATGTTCTCTGCTCATCTCCTTCTCTTTGACGGAATGAGTGCTCCAAAAGGGCGTACATGATTCTTCCAATACCATAAGATGGCTCAATGACTGATGGAGTGATCTCTTGAACATGAATCTTCTTGGAGTACTTTTTAATATTGACAAGATCAGGTGCCAATTCGAACTTCTCTCCATTG</canonical>
            <polymorphic>TCATAATTTTATCTCGATTTTTCAGATTTACATCGAAAAAACTGTGAAAATCGTCAAAAAATTAGAAAACTCACCTCTTTTCCGTATATGAAAAATCCAACGACTCCGAGCATCTTTTTTTCAGTTCTAAATTTTTATTTTTCATTCAATTGTTTTTCAAAATTTTCAGATATTTTCAGCCGATAAAGAACGCAATTTATTTTATGACCGATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCAGATTGAAAAACAAAAAAGGAAGCACACACACTGATTAAAGAGAACCATAATAATAATTTAAACAGGCAACAAAGAAAAAAGGATTATATTGAGCTAGAAAATTATTCAGCACTCGCTTCGAACTTTGGATACTTTGCCTGCGCATCACTCCATTGTTGCCGGCCACTGACCAGATCCGAAATCAGTCTTCCGAGCTCCGAGACCTCCAGCCGAATCTGCGACATTGTCTCCGCGTGGCGAATCGTCACAKTGTATGGAGTGGTCTTTCCGGATTCAAAGTCGACGGTGATACCGAATGGAATACCGATTTCGTCGGTACGAGCGTAGCGGCGACCGATGGTTCCAGAGCTGTCGTCCTGGAATGATATATTGATTTAAAAAGTGGAATATATGATCCTGGCTGGCATTTATAACTCTGACAGCCTCTGACCCCTACTTACCACTTTGTAGCTAAGCTCATAGTGAGAAAGCTCCTCCTTAACAGCATCCATCACTGGTACCAACGTATCATTGGCAGAAATCGGGAGAATTGAGCACTTGATAGGGGCGACGAGTGGCTTGAATGCCAAGAATGTTCTCTGCTCATCTCCTTCTCTTTGACGGAATGAGTGCTCCAAAAGGGCGTACATGATTCTTCCAATACCATAAGATGGCTCAATGACTGATGGAGTGATCTCTTGAACATGAATCTTCTTGGAGTACTTTTTAATATTGACAAGATCAGGTGCCAATTCGAACTTCTCTCCATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>465 456 43 36</canonical_bands>
                <polymorphic_bands>492 465 43</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>201 96 81 71 61 58 55 55 46 43 36 29 27 27 23 22 20 18 11 9 5 2 2 2</canonical_bands>
                <polymorphic_bands>201 96 81 71 61 58 55 55 46 43 36 29 27 27 23 22 20 18 14 11 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAACAGGCAACAAAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATCGGTATTCCATTCGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAACAGGCAACAAAGAAAAAAGGATTATATTGAGCTAGAAAATTATTCAGCACTCGCTTCGAACTTTGGATACTTTGCCTGCGCATCACTCCATTGTTGCCGGCCACTGACCAGATCCGAAATCAGTCTTCCGAGCTCCGAGACCTCCAGCCGAATCTGCGACATTGTCTCCGCGTGGCGAATCGTCACAGTGTATGGAGTGGTCTTTCCGGATTCAAAGTCGACGGTGATACCGAATGGAATACCGAT</canonical_amplicon>
		<polymorphic_amplicon>TAAACAGGCAACAAAGAAAAAAGGATTATATTGAGCTAGAAAATTATTCAGCACTCGCTTCGAACTTTGGATACTTTGCCTGCGCATCACTCCATTGTTGCCGGCCACTGACCAGATCCGAAATCAGTCTTCCGAGCTCCGAGACCTCCAGCCGAATCTGCGACATTGTCTCCGCGTGGCGAATCGTCACAKTGTATGGAGTGGTCTTTCCGGATTCAAAGTCGACGGTGATACCGAATGGAATACCGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33931</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>226377</contig_pos>
        <strand>+</strand>
        <context>ATCGTCACAK[G/T]GTATGGAGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GACCTCCAGCCGAATCTGCGACATTGTCTCCGCGTGGCGAATCGTCACAG</left_flank>
        <right_flank>GTATGGAGTGGTCTTTCCGGATTCAAAGTCGACGGTGATACCGAATGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATAATTTTATCTCGATTTTTCAGATTTACATCGAAAAAACTGTGAAAATCGTCAAAAAATTAGAAAACTCACCTCTTTTCCGTATATGAAAAATCCAACGACTCCGAGCATCTTTTTTTCAGTTCTAAATTTTTATTTTTCATTCAATTGTTTTTCAAAATTTTCAGATATTTTCAGCCGATAAAGAACGCAATTTATTTTATGACCGATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCAGATTGAAAAACAAAAAAGGAAGCACACACACTGATTAAAGAGAACCATAATAATAATTTAAACAGGCAACAAAGAAAAAAGGATTATATTGAGCTAGAAAATTATTCAGCACTCGCTTCGAACTTTGGATACTTTGCCTGCGCATCACTCCATTGTTGCCGGCCACTGACCAGATCCGAAATCAGTCTTCCGAGCTCCGAGACCTCCAGCCGAATCTGCGACATTGTCTCCGCGTGGCGAATCGTCACAGTGTATGGAGTGGTCTTTCCGGATTCAAAGTCGACGGTGATACCGAATGGAATACCGATTTCGTCGGTACGAGCGTAGCGGCGACCGATGGTTCCAGAGCTGTCGTCCTGGAATGATATATTGATTTAAAAAGTGGAATATATGATCCTGGCTGGCATTTATAACTCTGACAGCCTCTGACCCCTACTTACCACTTTGTAGCTAAGCTCATAGTGAGAAAGCTCCTCCTTAACAGCATCCATCACTGGTACCAACGTATCATTGGCAGAAATCGGGAGAATTGAGCACTTGATAGGGGCGACGAGTGGCTTGAATGCCAAGAATGTTCTCTGCTCATCTCCTTCTCTTTGACGGAATGAGTGCTCCAAAAGGGCGTACATGATTCTTCCAATACCATAAGATGGCTCAATGACTGATGGAGTGATCTCTTGAACATGAATCTTCTTGGAGTACTTTTTAATATTGACAAGATCAGGTGCCAATTCGAACTTCTCTCCATTGA</canonical>
            <polymorphic>CATAATTTTATCTCGATTTTTCAGATTTACATCGAAAAAACTGTGAAAATCGTCAAAAAATTAGAAAACTCACCTCTTTTCCGTATATGAAAAATCCAACGACTCCGAGCATCTTTTTTTCAGTTCTAAATTTTTATTTTTCATTCAATTGTTTTTCAAAATTTTCAGATATTTTCAGCCGATAAAGAACGCAATTTATTTTATGACCGATAAGCAAAATTTTTTCATTCAAATAGAGAAACGAAACCAGATTGAAAAACAAAAAAGGAAGCACACACACTGATTAAAGAGAACCATAATAATAATTTAAACAGGCAACAAAGAAAAAAGGATTATATTGAGCTAGAAAATTATTCAGCACTCGCTTCGAACTTTGGATACTTTGCCTGCGCATCACTCCATTGTTGCCGGCCACTGACCAGATCCGAAATCAGTCTTCCGAGCTCCGAGACCTCCAGCCGAATCTGCGACATTGTCTCCGCGTGGCGAATCGTCACAGKGTATGGAGTGGTCTTTCCGGATTCAAAGTCGACGGTGATACCGAATGGAATACCGATTTCGTCGGTACGAGCGTAGCGGCGACCGATGGTTCCAGAGCTGTCGTCCTGGAATGATATATTGATTTAAAAAGTGGAATATATGATCCTGGCTGGCATTTATAACTCTGACAGCCTCTGACCCCTACTTACCACTTTGTAGCTAAGCTCATAGTGAGAAAGCTCCTCCTTAACAGCATCCATCACTGGTACCAACGTATCATTGGCAGAAATCGGGAGAATTGAGCACTTGATAGGGGCGACGAGTGGCTTGAATGCCAAGAATGTTCTCTGCTCATCTCCTTCTCTTTGACGGAATGAGTGCTCCAAAAGGGCGTACATGATTCTTCCAATACCATAAGATGGCTCAATGACTGATGGAGTGATCTCTTGAACATGAATCTTCTTGGAGTACTTTTTAATATTGACAAGATCAGGTGCCAATTCGAACTTCTCTCCATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>466 456 42 36</canonical_bands>
                <polymorphic_bands>492 466 42</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>201 96 81 71 61 58 55 55 45 43 36 29 27 27 24 22 20 18 11 9 5 2 2 2</canonical_bands>
                <polymorphic_bands>201 96 81 71 61 58 55 55 45 43 36 29 27 27 24 22 20 18 14 11 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAACAGGCAACAAAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATCGGTATTCCATTCGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAACAGGCAACAAAGAAAAAAGGATTATATTGAGCTAGAAAATTATTCAGCACTCGCTTCGAACTTTGGATACTTTGCCTGCGCATCACTCCATTGTTGCCGGCCACTGACCAGATCCGAAATCAGTCTTCCGAGCTCCGAGACCTCCAGCCGAATCTGCGACATTGTCTCCGCGTGGCGAATCGTCACAGTGTATGGAGTGGTCTTTCCGGATTCAAAGTCGACGGTGATACCGAATGGAATACCGAT</canonical_amplicon>
		<polymorphic_amplicon>TAAACAGGCAACAAAGAAAAAAGGATTATATTGAGCTAGAAAATTATTCAGCACTCGCTTCGAACTTTGGATACTTTGCCTGCGCATCACTCCATTGTTGCCGGCCACTGACCAGATCCGAAATCAGTCTTCCGAGCTCCGAGACCTCCAGCCGAATCTGCGACATTGTCTCCGCGTGGCGAATCGTCACAGKGTATGGAGTGGTCTTTCCGGATTCAAAGTCGACGGTGATACCGAATGGAATACCGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33932</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>228431</contig_pos>
        <strand>+</strand>
        <context>ACTCTCCATT[C/T]TTGGTGTCCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTCAATACTGTTCTTAATCAAATGATCCGCACGAAAGCACTCTCCATT</left_flank>
        <right_flank>TTGGTGTCCTTCACCATCCAATCAGCAAACCGATCCACGTGTCCAGATGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGAACATCAGATTGAAAGCGATCGGCTCGGTGAGATCGTTTCCGGTGATTGGAGACTTGAACTTGAATCTAGTGATAACTTCATGCATATCCTTATCATCGAATCCCTCGAGACGAGCCAGCACATCTTCACCGTCTTTTTTGATCTCAGCAGACACTTTCTTGTCCTATAAAAATTGACTAATAGAAGAGGAGATACCGTAAACACTCTAATAGAACGTCACCCGAATCGTCAACTTTGAGCCCATGTATCTCATTTTCTGTGAGAGATATCGAAAAGTGGTAAACTAATAAAATGTTGCTGATATCATGTTGAAGTTTTTATTAGTTGACAACTTTTTGATATCTTTTTTAAAGAAGTGAGATATTTATGCTCAAAGTGGACGTTCCGGGTGGTGTTCTATTAGAGTATTTACGGTATTTTACTATTTTACTCACATTCATCAACTTCTCAATACTGTTCTTAATCAAATGATCCGCACGAAAGCACTCTCCATTCTTGGTGTCCTTCACCATCCAATCAGCAAACCGATCCACGTGTCCAGATGCTTTCAACACTGGTTCTGGAGTCAATGAAGTGCAGTCGACCTCAAGCATACCCTCCTCCAGAATGAAGTGTTTTCTCCACTGTTGAAGCATATTAGCCTTGAGAGCACATCCCATTGGACCGAAGTCATAGAGACCGGTGACACCACCATAAATGGCGAAGGATTGATCATAGAAGAAGCGTCTTTTCAGAAGATCCTCAAGTTTCAAACGATCGAAAGAGGCTTCCTTCGGTGCCAACGCGATTTCGGTTTCCTCGAGAAGCTTCTTTCTGGCCTTCAACTCGACGACAGCCTTATCAATATCGATTTTTGGGGCTTGTTTTGCCTTCAAGTCACGGATCAAGTCTCCATATTCTTTGACAGCTGCGCGGAGTGGCGCAAGTTGCTGAAAAATTGAGATTATAAAGTTCTGGTATTACTGAGGTCTAATTTTGCGTTGCGGACGAAAATT</canonical>
            <polymorphic>TGGGAACATCAGATTGAAAGCGATCGGCTCGGTGAGATCGTTTCCGGTGATTGGAGACTTGAACTTGAATCTAGTGATAACTTCATGCATATCCTTATCATCGAATCCCTCGAGACGAGCCAGCACATCTTCACCGTCTTTTTTGATCTCAGCAGACACTTTCTTGTCCTATAAAAATTGACTAATAGAAGAGGAGATACCGTAAACACTCTAATAGAACGTCACCCGAATCGTCAACTTTGAGCCCATGTATCTCATTTTCTGTGAGAGATATCGAAAAGTGGTAAACTAATAAAATGTTGCTGATATCATGTTGAAGTTTTTATTAGTTGACAACTTTTTGATATCTTTTTTAAAGAAGTGAGATATTTATGCTCAAAGTGGACGTTCCGGGTGGTGTTCTATTAGAGTATTTACGGTATTTTACTATTTTACTCACATTCATCAACTTCTCAATACTGTTCTTAATCAAATGATCCGCACGAAAGCACTCTCCATTYTTGGTGTCCTTCACCATCCAATCAGCAAACCGATCCACGTGTCCAGATGCTTTCAACACTGGTTCTGGAGTCAATGAAGTGCAGTCGACCTCAAGCATACCCTCCTCCAGAATGAAGTGTTTTCTCCACTGTTGAAGCATATTAGCCTTGAGAGCACATCCCATTGGACCGAAGTCATAGAGACCGGTGACACCACCATAAATGGCGAAGGATTGATCATAGAAGAAGCGTCTTTTCAGAAGATCCTCAAGTTTCAAACGATCGAAAGAGGCTTCCTTCGGTGCCAACGCGATTTCGGTTTCCTCGAGAAGCTTCTTTCTGGCCTTCAACTCGACGACAGCCTTATCAATATCGATTTTTGGGGCTTGTTTTGCCTTCAAGTCACGGATCAAGTCTCCATATTCTTTGACAGCTGCGCGGAGTGGCGCAAGTTGCTGAAAAATTGAGATTATAAAGTTCTGGTATTACTGAGGTCTAATTTTGCGTTGCGGACGAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCACATTCATCAACTTCTCAATA</pcr_primer_p1>
		<pcr_primer_p2>GTCTCTATGACTTCGGTCCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCACATTCATCAACTTCTCAATACTGTTCTTAATCAAATGATCCGCACGAAAGCACTCTCCATTCTTGGTGTCCTTCACCATCCAATCAGCAAACCGATCCACGTGTCCAGATGCTTTCAACACTGGTTCTGGAGTCAATGAAGTGCAGTCGACCTCAAGCATACCCTCCTCCAGAATGAAGTGTTTTCTCCACTGTTGAAGCATATTAGCCTTGAGAGCACATCCCATTGGACCGAAGTCATAGAGAC</canonical_amplicon>
		<polymorphic_amplicon>TCACATTCATCAACTTCTCAATACTGTTCTTAATCAAATGATCCGCACGAAAGCACTCTCCATTYTTGGTGTCCTTCACCATCCAATCAGCAAACCGATCCACGTGTCCAGATGCTTTCAACACTGGTTCTGGAGTCAATGAAGTGCAGTCGACCTCAAGCATACCCTCCTCCAGAATGAAGTGTTTTCTCCACTGTTGAAGCATATTAGCCTTGAGAGCACATCCCATTGGACCGAAGTCATAGAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33933</snp_id>
        <super_contig>c008701091.Contig3</super_contig>
        <contig_pos>247209</contig_pos>
        <strand>+</strand>
        <context>accCGGAAAA[C/T]CATTTGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAAATCAACGTGCGAATGTTAGGCCACACTGTTAAATGACCCGGAAAA</left_flank>
        <right_flank>CATTTGAAAATGACCTAGAAAACAAATCAGGTGTAAATTGAAGGAAAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCCTATTGACGACATTCCTAGCCTTCGCCATTCCGAGAACTGAAAATGGACCATTGGTGGAAGTAGGACTTCTTCATAATGTTAGTTTTTTTGGAAAAAATGGGATTGGGGTTGCAGAAAATCGAAAATCATATGAGCTTCATGTGAGGAATACAGTGGCCTAACTTCCTCCACATTATTTTTCTAGGCCACTGTAGCTAATAAGCAGAAATAGTTCTGGTGGGTTTTCTAGGTAAATTTAACATGATGGCCTAACATCTGCAAGCTGAGTTTTCTAGGCCACCAACGTGTATGACCTAGAAATGACCTAATATTCGCCTGGTGAGTTTTCTAGGCTGTTTTCACTGGTTTCGCATGTTGAGTATTCTAGGCCATCGTGGTGAATAGACTAGAAAACTCACCAGACGAATATCAGATCATTTCTACGGTATTTATGATGATGGCCTAGAAAAATCAACGTGCGAATGTTAGGCCACACTGTTAAATGACCCGGAAAACCATTTGAAAATGACCTAGAAAACAAATCAGGTGTAAATTGAAGGAAAATAGAAAATTAAACGAAATGTGAGTCAGGGAACTACATAATTATTTCGACGAAAACGAGATTTTTGGACTCCTTACCCTATGTGAAAAATTATGTCAAATAAAAAATTTTGAAAGTGTACTGATTAGCCAGACATTTCGTCTGTTGATCCCTTTCGCCACATCTCAGTACGTGAAAGGGAATCTGGTTTTTACCGGGAAAAAACCTGACGAAAAACCACTGGCACCAGGGAATCTTGCGAAACCACTGACATCAGGATATATGGGGATATATCACTGGCATCAGGATATGGGGGGGGGGAGGCATATCACTGGCATCAGGGAGTTTTGCGACACCCTGGGCAACGAGGGAGGGAGGGAGAAAAAGGAAGAAAAAAAAAATGAAAACTGAGTATTTGAGCCCTCATCTAGGAACATCCTCATCTTGACCTACATGCGTCTTCACTTAAGGGGCG</canonical>
            <polymorphic>TTGCCTATTGACGACATTCCTAGCCTTCGCCATTCCGAGAACTGAAAATGGACCATTGGTGGAAGTAGGACTTCTTCATAATGTTAGTTTTTTTGGAAAAAATGGGATTGGGGTTGCAGAAAATCGAAAATCATATGAGCTTCATGTGAGGAATACAGTGGCCTAACTTCCTCCACATTATTTTTCTAGGCCACTGTAGCTAATAAGCAGAAATAGTTCTGGTGGGTTTTCTAGGTAAATTTAACATGATGGCCTAACATCTGCAAGCTGAGTTTTCTAGGCCACCAACGTGTATGACCTAGAAATGACCTAATATTCGCCTGGTGAGTTTTCTAGGCTGTTTTCACTGGTTTCGCATGTTGAGTATTCTAGGCCATCGTGGTGAATAGACTAGAAAACTCACCAGACGAATATCAGATCATTTCTACGGTATTTATGATGATGGCCTAGAAAAATCAACGTGCGAATGTTAGGCCACACTGTTAAATGACCCGGAAAAYCATTTGAAAATGACCTAGAAAACAAATCAGGTGTAAATTGAAGGAAAATAGAAAATTAAACGAAATGTGAGTCAGGGAACTACATAATTATTTCGACGAAAACGAGATTTTTGGACTCCTTACCCTATGTGAAAAATTATGTCAAATAAAAAATTTTGAAAGTGTACTGATTAGCCAGACATTTCGTCTGTTGATCCCTTTCGCCACATCTCAGTACGTGAAAGGGAATCTGGTTTTTACCGGGAAAAAACCTGACGAAAAACCACTGGCACCAGGGAATCTTGCGAAACCACTGACATCAGGATATATGGGGATATATCACTGGCATCAGGATATGGGGGGGGGGAGGCATATCACTGGCATCAGGGAGTTTTGCGACACCCTGGGCAACGAGGGAGGGAGGGAGAAAAAGGAAGAAAAAAAAAATGAAAACTGAGTATTTGAGCCCTCATCTAGGAACATCCTCATCTTGACCTACATGCGTCTTCACTTAAGGGGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCTTCATGTGAGGAATACA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTATTTTCCTTCAATTTACA</pcr_primer_p2>
		<pcr_amplicon_size>419</pcr_amplicon_size>
		<canonical_amplicon>GAGCTTCATGTGAGGAATACAGTGGCCTAACTTCCTCCACATTATTTTTCTAGGCCACTGTAGCTAATAAGCAGAAATAGTTCTGGTGGGTTTTCTAGGTAAATTTAACATGATGGCCTAACATCTGCAAGCTGAGTTTTCTAGGCCACCAACGTGTATGACCTAGAAATGACCTAATATTCGCCTGGTGAGTTTTCTAGGCTGTTTTCACTGGTTTCGCATGTTGAGTATTCTAGGCCATCGTGGTGAATAGACTAGAAAACTCACCAGACGAATATCAGATCATTTCTACGGTATTTATGATGATGGCCTAGAAAAATCAACGTGCGAATGTTAGGCCACACTGTTAAATGACCCGGAAAACCATTTGAAAATGACCTAGAAAACAAATCAGGTGTAAATTGAAGGAAAATAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAGCTTCATGTGAGGAATACAGTGGCCTAACTTCCTCCACATTATTTTTCTAGGCCACTGTAGCTAATAAGCAGAAATAGTTCTGGTGGGTTTTCTAGGTAAATTTAACATGATGGCCTAACATCTGCAAGCTGAGTTTTCTAGGCCACCAACGTGTATGACCTAGAAATGACCTAATATTCGCCTGGTGAGTTTTCTAGGCTGTTTTCACTGGTTTCGCATGTTGAGTATTCTAGGCCATCGTGGTGAATAGACTAGAAAACTCACCAGACGAATATCAGATCATTTCTACGGTATTTATGATGATGGCCTAGAAAAATCAACGTGCGAATGTTAGGCCACACTGTTAAATGACCCGGAAAAYCATTTGAAAATGACCTAGAAAACAAATCAGGTGTAAATTGAAGGAAAATAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33934</snp_id>
        <super_contig>c008701363.Contig1</super_contig>
        <contig_pos>65040</contig_pos>
        <strand>+</strand>
        <context>AAGTCATCGA[A/G]AACATGGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATCAATCATTTTTCTGTTGTCTTCTGCTTATTTTGAATAAAGTCATCGA</left_flank>
        <right_flank>AACATGGAAAAGAAGAAGGAAGGGGGAACATGTAGAACGTTTTGCTCTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACAGAATAAGAAGTAGCCGAATATGGAGAAGAAGAAGAAGTAGCAGGGGTTAGTTGTTGGAAGGAGAAGAAAAATGGTGTGGGGTGGCTGGCGGGCTAAGCCAGGGAGGGAGCAAACAGTGGGCGTGGCTTAGAAGGAAAGGAGAGAGAGAAAGTTCTGGATTCTCCTGACTCTCAATACTCTCTACAACTCTCCCACACTTTATTCTGGCCGCGCGCGCGGGCAGATGGCGTTAGAGAGAATAGAGTGCAGAGACGCAGAGAAAAATAGAAATAGAGGGGTCCATTGGGAAAGAAGAAGAAGAAGATGGCTTCCGAGTGGGGAAGAGCAGATGGGACAGCATTTGGGGGTATGGAAAATAGGAAAAGCCAGACGAAGAATAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGTGTTTTGGGAAGATGAAGAAGGGAAAATGACGATCAATCATTTTTCTGTTGTCTTCTGCTTATTTTGAATAAAGTCATCGAGAACATGGAAAAGAAGAAGGAAGGGGGAACATGTAGAACGTTTTGCTCTTCTTAAAAGAAAAATTTAAAAAAAATTAGATTTTGCCCTTCTTCTTGTCCTTATCGTAATATTAAAAAACTAGAAAAATACATGTTTGGGATCCTAAAAGCCACAAAAAAAGGTTCCTGAACGTTTTCTCCATTCGTTGCCTTTATATATCTTGAATCAGAAGAAGAAGAAAGGAAAAGTTTTTAGGAAGTTGTATGGTTCATGTTTTGCCTGAATAAATTCAATAAAATGGGGGCAAAGCTTCTGGGATTTTTGGATTTTTTTCGTTTGGGATAATGGATAATGGATAAATAGAATCAAGGAAAAGAAAAAAAAAAGAAAAATTCAGAACTTTTCTGGTTTTCAGGGATAAACAAAGCTTGACTTATTTTTTGTCTTCTTCAAAAAAGAAAAGAAAATCAAGAAATGACAAAAATGACAAATCAGCACGAAAATGTTTTACAGTGGCGAGA</canonical>
            <polymorphic>TACAGAATAAGAAGTAGCCGAATATGGAGAAGAAGAAGAAGTAGCAGGGGTTAGTTGTTGGAAGGAGAAGAAAAATGGTGTGGGGTGGCTGGCGGGCTAAGCCAGGGAGGGAGCAAACAGTGGGCGTGGCTTAGAAGGAAAGGAGAGAGAGAAAGTTCTGGATTCTCCTGACTCTCAATACTCTCTACAACTCTCCCACACTTTATTCTGGCCGCGCGCGCGGGCAGATGGCGTTAGAGAGAATAGAGTGCAGAGACGCAGAGAAAAATAGAAATAGAGGGGTCCATTGGGAAAGAAGAAGAAGAAGATGGCTTCCGAGTGGGGAAGAGCAGATGGGACAGCATTTGGGGGTATGGAAAATAGGAAAAGCCAGACGAAGAATAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGTGTTTTGGGAAGATGAAGAAGGGAAAATGACGATCAATCATTTTTCTGTTGTCTTCTGCTTATTTTGAATAAAGTCATCGARAACATGGAAAAGAAGAAGGAAGGGGGAACATGTAGAACGTTTTGCTCTTCTTAAAAGAAAAATTTAAAAAAAATTAGATTTTGCCCTTCTTCTTGTCCTTATCGTAATATTAAAAAACTAGAAAAATACATGTTTGGGATCCTAAAAGCCACAAAAAAAGGTTCCTGAACGTTTTCTCCATTCGTTGCCTTTATATATCTTGAATCAGAAGAAGAAGAAAGGAAAAGTTTTTAGGAAGTTGTATGGTTCATGTTTTGCCTGAATAAATTCAATAAAATGGGGGCAAAGCTTCTGGGATTTTTGGATTTTTTTCGTTTGGGATAATGGATAATGGATAAATAGAATCAAGGAAAAGAAAAAAAAAAGAAAAATTCAGAACTTTTCTGGTTTTCAGGGATAAACAAAGCTTGACTTATTTTTTGTCTTCTTCAAAAAAGAAAAGAAAATCAAGAAATGACAAAAATGACAAATCAGCACGAAAATGTTTTACAGTGGCGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>330 249 167 158 52 35 9</canonical_bands>
                <polymorphic_bands>497 249 158 52 35 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGTATGGAAAATAGGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>AAGAAGAAGGGCAAAATCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GGGTATGGAAAATAGGAAAAGCCAGACGAAGAATAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGTGTTTTGGGAAGATGAAGAAGGGAAAATGACGATCAATCATTTTTCTGTTGTCTTCTGCTTATTTTGAATAAAGTCATCGAGAACATGGAAAAGAAGAAGGAAGGGGGAACATGTAGAACGTTTTGCTCTTCTTAAAAGAAAAATTTAAAAAAAATTAGATTTTGCCCTTCTTCTT</canonical_amplicon>
		<polymorphic_amplicon>GGGTATGGAAAATAGGAAAAGCCAGACGAAGAATAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGTGTTTTGGGAAGATGAAGAAGGGAAAATGACGATCAATCATTTTTCTGTTGTCTTCTGCTTATTTTGAATAAAGTCATCGARAACATGGAAAAGAAGAAGGAAGGGGGAACATGTAGAACGTTTTGCTCTTCTTAAAAGAAAAATTTAAAAAAAATTAGATTTTGCCCTTCTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33935</snp_id>
        <super_contig>c008701363.Contig1</super_contig>
        <contig_pos>65093</contig_pos>
        <strand>+</strand>
        <context>TGCTCTTCTT[A/T]AAAGAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATGGAAAAGAAGAAGGAAGGGGGAACATGTAGAACGTTTTGCTCTTCTT</left_flank>
        <right_flank>AAAGAAAAATTTAAAAAAAATTAGATTTTGCCCTTCTTCTTGTCCTTATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTGTTGGAAGGAGAAGAAAAATGGTGTGGGGTGGCTGGCGGGCTAAGCCAGGGAGGGAGCAAACAGTGGGCGTGGCTTAGAAGGAAAGGAGAGAGAGAAAGTTCTGGATTCTCCTGACTCTCAATACTCTCTACAACTCTCCCACACTTTATTCTGGCCGCGCGCGCGGGCAGATGGCGTTAGAGAGAATAGAGTGCAGAGACGCAGAGAAAAATAGAAATAGAGGGGTCCATTGGGAAAGAAGAAGAAGAAGATGGCTTCCGAGTGGGGAAGAGCAGATGGGACAGCATTTGGGGGTATGGAAAATAGGAAAAGCCAGACGAAGAATAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGTGTTTTGGGAAGATGAAGAAGGGAAAATGACGATCAATCATTTTTCTGTTGTCTTCTGCTTATTTTGAATAAAGTCATCGAGAACATGGAAAAGAAGAAGGAAGGGGGAACATGTAGAACGTTTTGCTCTTCTTAAAAGAAAAATTTAAAAAAAATTAGATTTTGCCCTTCTTCTTGTCCTTATCGTAATATTAAAAAACTAGAAAAATACATGTTTGGGATCCTAAAAGCCACAAAAAAAGGTTCCTGAACGTTTTCTCCATTCGTTGCCTTTATATATCTTGAATCAGAAGAAGAAGAAAGGAAAAGTTTTTAGGAAGTTGTATGGTTCATGTTTTGCCTGAATAAATTCAATAAAATGGGGGCAAAGCTTCTGGGATTTTTGGATTTTTTTCGTTTGGGATAATGGATAATGGATAAATAGAATCAAGGAAAAGAAAAAAAAAAGAAAAATTCAGAACTTTTCTGGTTTTCAGGGATAAACAAAGCTTGACTTATTTTTTGTCTTCTTCAAAAAAGAAAAGAAAATCAAGAAATGACAAAAATGACAAATCAGCACGAAAATGTTTTACAGTGGCGAGAAGTGGTGAGGAGAATTTTTTCGAACATTCATAACTCTGTTCAAATTCGCTCAA</canonical>
            <polymorphic>GTTGTTGGAAGGAGAAGAAAAATGGTGTGGGGTGGCTGGCGGGCTAAGCCAGGGAGGGAGCAAACAGTGGGCGTGGCTTAGAAGGAAAGGAGAGAGAGAAAGTTCTGGATTCTCCTGACTCTCAATACTCTCTACAACTCTCCCACACTTTATTCTGGCCGCGCGCGCGGGCAGATGGCGTTAGAGAGAATAGAGTGCAGAGACGCAGAGAAAAATAGAAATAGAGGGGTCCATTGGGAAAGAAGAAGAAGAAGATGGCTTCCGAGTGGGGAAGAGCAGATGGGACAGCATTTGGGGGTATGGAAAATAGGAAAAGCCAGACGAAGAATAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGTGTTTTGGGAAGATGAAGAAGGGAAAATGACGATCAATCATTTTTCTGTTGTCTTCTGCTTATTTTGAATAAAGTCATCGAGAACATGGAAAAGAAGAAGGAAGGGGGAACATGTAGAACGTTTTGCTCTTCTTWAAAGAAAAATTTAAAAAAAATTAGATTTTGCCCTTCTTCTTGTCCTTATCGTAATATTAAAAAACTAGAAAAATACATGTTTGGGATCCTAAAAGCCACAAAAAAAGGTTCCTGAACGTTTTCTCCATTCGTTGCCTTTATATATCTTGAATCAGAAGAAGAAGAAAGGAAAAGTTTTTAGGAAGTTGTATGGTTCATGTTTTGCCTGAATAAATTCAATAAAATGGGGGCAAAGCTTCTGGGATTTTTGGATTTTTTTCGTTTGGGATAATGGATAATGGATAAATAGAATCAAGGAAAAGAAAAAAAAAAGAAAAATTCAGAACTTTTCTGGTTTTCAGGGATAAACAAAGCTTGACTTATTTTTTGTCTTCTTCAAAAAAGAAAAGAAAATCAAGAAATGACAAAAATGACAAATCAGCACGAAAATGTTTTACAGTGGCGAGAAGTGGTGAGGAGAATTTTTTCGAACATTCATAACTCTGTTCAAATTCGCTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>498 443 46 13</canonical_bands>
                <polymorphic_bands>511 443 46</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGCTTATTTTGAATAAAGTCAT</pcr_primer_p1>
		<pcr_primer_p2>CTTTCTTCTTCTTCTGATTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTGCTTATTTTGAATAAAGTCATCGAGAACATGGAAAAGAAGAAGGAAGGGGGAACATGTAGAACGTTTTGCTCTTCTTAAAAGAAAAATTTAAAAAAAATTAGATTTTGCCCTTCTTCTTGTCCTTATCGTAATATTAAAAAACTAGAAAAATACATGTTTGGGATCCTAAAAGCCACAAAAAAAGGTTCCTGAACGTTTTCTCCATTCGTTGCCTTTATATATCTTGAATCAGAAGAAGAAGAAAG</canonical_amplicon>
		<polymorphic_amplicon>TCTGCTTATTTTGAATAAAGTCATCGAGAACATGGAAAAGAAGAAGGAAGGGGGAACATGTAGAACGTTTTGCTCTTCTTWAAAGAAAAATTTAAAAAAAATTAGATTTTGCCCTTCTTCTTGTCCTTATCGTAATATTAAAAAACTAGAAAAATACATGTTTGGGATCCTAAAAGCCACAAAAAAAGGTTCCTGAACGTTTTCTCCATTCGTTGCCTTTATATATCTTGAATCAGAAGAAGAAGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33936</snp_id>
        <super_contig>c008701363.Contig1</super_contig>
        <contig_pos>65237</contig_pos>
        <strand>+</strand>
        <context>GCYTKTATWT[A/G]TCTTGAATCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCCACAAAAAAAGGTTCCTGAACGTTTTCTCCATTCGTTGCCTTTATAT</left_flank>
        <right_flank>TCTTGAATCAGAAGAAGAAGAAAGGAAAAGTTTTTAGGAAGTTGTATGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACTTTATTCTGGCCGCGCGCGCGGGCAGATGGCGTTAGAGAGAATAGAGTGCAGAGACGCAGAGAAAAATAGAAATAGAGGGGTCCATTGGGAAAGAAGAAGAAGAAGATGGCTTCCGAGTGGGGAAGAGCAGATGGGACAGCATTTGGGGGTATGGAAAATAGGAAAAGCCAGACGAAGAATAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGTGTTTTGGGAAGATGAAGAAGGGAAAATGACGATCAATCATTTTTCTGTTGTCTTCTGCTTATTTTGAATAAAGTCATCGAGAACATGGAAAAGAAGAAGGAAGGGGGAACATGTAGAACGTTTTGCTCTTCTTAAAAGAAAAATTTAAAAAAAATTAGATTTTGCCCTTCTTCTTGTCCTTATCGTAATATTAAAAAACTAGAAAAATACATGTTTGGGATCCTAAAAGCCACAAAAAAAGGTTCCTGAACGTTTTCTCCATTCGTTGCCTTTATATATCTTGAATCAGAAGAAGAAGAAAGGAAAAGTTTTTAGGAAGTTGTATGGTTCATGTTTTGCCTGAATAAATTCAATAAAATGGGGGCAAAGCTTCTGGGATTTTTGGATTTTTTTCGTTTGGGATAATGGATAATGGATAAATAGAATCAAGGAAAAGAAAAAAAAAAGAAAAATTCAGAACTTTTCTGGTTTTCAGGGATAAACAAAGCTTGACTTATTTTTTGTCTTCTTCAAAAAAGAAAAGAAAATCAAGAAATGACAAAAATGACAAATCAGCACGAAAATGTTTTACAGTGGCGAGAAGTGGTGAGGAGAATTTTTTCGAACATTCATAACTCTGTTCAAATTCGCTCAATTGACTTGAAATTTCGCATGAGAATAGCTGTAAAATCCAAAAACATAAAAATCGGTTTTTTGAAAACTTCTCGTTTTCAGAATTTTCAGAGCAGTTTCAGATGTAACAGTGGCCCAAGAATCCAAAAAAAAAACTTTTTTTCAG</canonical>
            <polymorphic>ACACTTTATTCTGGCCGCGCGCGCGGGCAGATGGCGTTAGAGAGAATAGAGTGCAGAGACGCAGAGAAAAATAGAAATAGAGGGGTCCATTGGGAAAGAAGAAGAAGAAGATGGCTTCCGAGTGGGGAAGAGCAGATGGGACAGCATTTGGGGGTATGGAAAATAGGAAAAGCCAGACGAAGAATAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGTGTTTTGGGAAGATGAAGAAGGGAAAATGACGATCAATCATTTTTCTGTTGTCTTCTGCTTATTTTGAATAAAGTCATCGAGAACATGGAAAAGAAGAAGGAAGGGGGAACATGTAGAACGTTTTGCTCTTCTTAAAAGAAAAATTTAAAAAAAATTAGATTTTGCCCTTCTTCTTGTCCTTATCGTAATATTAAAAAACTAGAAAAATACATGTTTGGGATCCTAAAAGCCACAAAAAAAGGTTCCTGAACGTTTTCTCCATTCGTTGCCTTTATATRTCTTGAATCAGAAGAAGAAGAAAGGAAAAGTTTTTAGGAAGTTGTATGGTTCATGTTTTGCCTGAATAAATTCAATAAAATGGGGGCAAAGCTTCTGGGATTTTTGGATTTTTTTCGTTTGGGATAATGGATAATGGATAAATAGAATCAAGGAAAAGAAAAAAAAAAGAAAAATTCAGAACTTTTCTGGTTTTCAGGGATAAACAAAGCTTGACTTATTTTTTGTCTTCTTCAAAAAAGAAAAGAAAATCAAGAAATGACAAAAATGACAAATCAGCACGAAAATGTTTTACAGTGGCGAGAAGTGGTGAGGAGAATTTTTTCGAACATTCATAACTCTGTTCAAATTCGCTCAATTGACTTGAAATTTCGCATGAGAATAGCTGTAAAATCCAAAAACATAAAAATCGGTTTTTTGAAAACTTCTCGTTTTCAGAATTTTCAGAGCAGTTTCAGATGTAACAGTGGCCCAAGAATCCAAAAAAAAAACTTTTTTTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTAGAACGTTTTGCTCTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTATTGAATTTATTCAGGCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATGTAGAACGTTTTGCTCTTCTTAAAAGAAAAATTTAAAAAAAATTAGATTTTGCCCTTCTTCTTGTCCTTATCGTAATATTAAAAAACTAGAAAAATACATGTTTGGGATCCTAAAAGCCACAAAAAAAGGTTCCTGAACGTTTTCTCCATTCGTTGCCTTTATATATCTTGAATCAGAAGAAGAAGAAAGGAAAAGTTTTTAGGAAGTTGTATGGTTCATGTTTTGCCTGAATAAATTCAATAA</canonical_amplicon>
		<polymorphic_amplicon>ATGTAGAACGTTTTGCTCTTCTTAAAAGAAAAATTTAAAAAAAATTAGATTTTGCCCTTCTTCTTGTCCTTATCGTAATATTAAAAAACTAGAAAAATACATGTTTGGGATCCTAAAAGCCACAAAAAAAGGTTCCTGAACGTTTTCTCCATTCGTTGCCTTTATATRTCTTGAATCAGAAGAAGAAGAAAGGAAAAGTTTTTAGGAAGTTGTATGGTTCATGTTTTGCCTGAATAAATTCAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33937</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>64066</contig_pos>
        <strand></strand>
        <context>ttcacgggaa[C/T]cgagataact</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTACTAACATTTTATTAGTTGACATATTTCTGATATCTTTCACGGGAA</left_flank>
        <right_flank>CGAGATAACTGAGCTCAAAGTTGAAGGCTGAAATGAGCTTATATTAAAGG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCACGGGGAACTTTTTGTATTTTGTTTAATGACGTATACGGGAAAAGGGAAAGTTTGGCGAATCATATGTTCGGGAGAAACTTGCTGAACTAGGGAAAAAAGGTGGGGAGATCCCAGAAAACTACATTACAGCTGTTCCTCTAATAGAAGCCTATCCATACCAGCAACGTCAAGCTCAATTATCTATGTTCCTGTCGATGAAATCAAAAATTTGTTAACTGATAAATTGCTTATCATATTATATCCAATTTTTTATAAGTTGGCATACTTTTGATATATTTTACAATAATCCAAATAAGGGAGCTCAAAGTAAGTGGATTGGGTAATTGAAGGAAATACTGTTTCCATCCTCCCTGTTTCAAAAAATATCTCACACTTTGACCTCAATTATCTTGATTCCTGTTGTAGATATCCAAAAGTTGTCAACTAATAACTTGTTTATAATATTATTACTAACATTTTATTAGTTGACATATTTCTGATATCTTTCACGGGAACCGAGATAACTGAGCTCAAAGTTGAAGGCTGAAATGAGCTTATATTAAAGGAAGTACAGTATTTTTTACCTTTGACCTTATTATCTCGATTCGATTCCTGTCAAAAATTTACAAAAGTTGTCAACTGATCAATTGTTCACTATAATATCACCAACATTTTAGCAATTAACACATTTTGGATATCTTGCATTCAATCTCTAAGTTATAATACAAATGTCAATCTGATAATAGTTTGTAATCACTTTCGATTACGACAAAACCTCTTATCATGAAAAGTAAGATAACCAATTGAAACAAAAATCGACCAAAAGTAAGCCACATGTCACAAGACAGTTCAACTAATCTGCCTCCTAATTGCTGACAACACACCGAAATTGGGCGTGTTTTCAACTTTCTCTCCTCGTCCCATCCACCCACATTCTTATCATATTTATATCTCAGCTATCACTCATCAAGATCTTTTGACGATAAGGAAAGTTTCAAAAGGAATGGGGTCAGTAA</canonical>
            <polymorphic>TTGCACGGGGAACTTTTTGTATTTTGTTTAATGACGTATACGGGAAAAGGGAAAGTTTGGCGAATCATATGTTCGGGAGAAACTTGCTGAACTAGGGAAAAAAGGTGGGGAGATCCCAGAAAACTACATTACAGCTGTTCCTCTAATAGAAGCCTATCCATACCAGCAACGTCAAGCTCAATTATCTATGTTCCTGTCGATGAAATCAAAAATTTGTTAACTGATAAATTGCTTATCATATTATATCCAATTTTTTATAAGTTGGCATACTTTTGATATATTTTACAATAATCCAAATAAGGGAGCTCAAAGTAAGTGGATTGGGTAATTGAAGGAAATACTGTTTCCATCCTCCCTGTTTCAAAAAATATCTCACACTTTGACCTCAATTATCTTGATTCCTGTTGTAGATATCCAAAAGTTGTCAACTAATAACTTGTTTATAATATTATTACTAACATTTTATTAGTTGACATATTTCTGATATCTTTCACGGGAAYCGAGATAACTGAGCTCAAAGTTGAAGGCTGAAATGAGCTTATATTAAAGGAAGTACAGTATTTTTTACCTTTGACCTTATTATCTCGATTCGATTCCTGTCAAAAATTTACAAAAGTTGTCAACTGATCAATTGTTCACTATAATATCACCAACATTTTAGCAATTAACACATTTTGGATATCTTGCATTCAATCTCTAAGTTATAATACAAATGTCAATCTGATAATAGTTTGTAATCACTTTCGATTACGACAAAACCTCTTATCATGAAAAGTAAGATAACCAATTGAAACAAAAATCGACCAAAAGTAAGCCACATGTCACAAGACAGTTCAACTAATCTGCCTCCTAATTGCTGACAACACACCGAAATTGGGCGTGTTTTCAACTTTCTCTCCTCGTCCCATCCACCCACATTCTTATCATATTTATATCTCAGCTATCACTCATCAAGATCTTTTGACGATAAGGAAAGTTTCAAAAGGAATGGGGTCAGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGTAATTGAAGGAAATACTGTT</pcr_primer_p1>
		<pcr_primer_p2>CGTAATCGAAAGTGATTACAAAC</pcr_primer_p2>
		<pcr_amplicon_size>430</pcr_amplicon_size>
		<canonical_amplicon>GGGTAATTGAAGGAAATACTGTTTCCATCCTCCCTGTTTCAAAAAATATCTCACACTTTGACCTCAATTATCTTGATTCCTGTTGTAGATATCCAAAAGTTGTCAACTAATAACTTGTTTATAATATTATTACTAACATTTTATTAGTTGACATATTTCTGATATCTTTCACGGGAACCGAGATAACTGAGCTCAAAGTTGAAGGCTGAAATGAGCTTATATTAAAGGAAGTACAGTATTTTTTACCTTTGACCTTATTATCTCGATTCGATTCCTGTCAAAAATTTACAAAAGTTGTCAACTGATCAATTGTTCACTATAATATCACCAACATTTTAGCAATTAACACATTTTGGATATCTTGCATTCAATCTCTAAGTTATAATACAAATGTCAATCTGATAATAGTTTGTAATCACTTTCGATTACG</canonical_amplicon>
		<polymorphic_amplicon>GGGTAATTGAAGGAAATACTGTTTCCATCCTCCCTGTTTCAAAAAATATCTCACACTTTGACCTCAATTATCTTGATTCCTGTTGTAGATATCCAAAAGTTGTCAACTAATAACTTGTTTATAATATTATTACTAACATTTTATTAGTTGACATATTTCTGATATCTTTCACGGGAAYCGAGATAACTGAGCTCAAAGTTGAAGGCTGAAATGAGCTTATATTAAAGGAAGTACAGTATTTTTTACCTTTGACCTTATTATCTCGATTCGATTCCTGTCAAAAATTTACAAAAGTTGTCAACTGATCAATTGTTCACTATAATATCACCAACATTTTAGCAATTAACACATTTTGGATATCTTGCATTCAATCTCTAAGTTATAATACAAATGTCAATCTGATAATAGTTTGTAATCACTTTCGATTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33938</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>64139</contig_pos>
        <strand></strand>
        <context>ttttaccttt[G/T]accttattat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAGGCTGAAATGAGCTTATATTAAAGGAAGTACAGTATTTTTTACCTTT</left_flank>
        <right_flank>ACCTTATTATCTCGATTCGATTCCTGTCAAAAATTTACAAAAGTTGTCAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGGAGAAACTTGCTGAACTAGGGAAAAAAGGTGGGGAGATCCCAGAAAACTACATTACAGCTGTTCCTCTAATAGAAGCCTATCCATACCAGCAACGTCAAGCTCAATTATCTATGTTCCTGTCGATGAAATCAAAAATTTGTTAACTGATAAATTGCTTATCATATTATATCCAATTTTTTATAAGTTGGCATACTTTTGATATATTTTACAATAATCCAAATAAGGGAGCTCAAAGTAAGTGGATTGGGTAATTGAAGGAAATACTGTTTCCATCCTCCCTGTTTCAAAAAATATCTCACACTTTGACCTCAATTATCTTGATTCCTGTTGTAGATATCCAAAAGTTGTCAACTAATAACTTGTTTATAATATTATTACTAACATTTTATTAGTTGACATATTTCTGATATCTTTCACGGGAACCGAGATAACTGAGCTCAAAGTTGAAGGCTGAAATGAGCTTATATTAAAGGAAGTACAGTATTTTTTACCTTTGACCTTATTATCTCGATTCGATTCCTGTCAAAAATTTACAAAAGTTGTCAACTGATCAATTGTTCACTATAATATCACCAACATTTTAGCAATTAACACATTTTGGATATCTTGCATTCAATCTCTAAGTTATAATACAAATGTCAATCTGATAATAGTTTGTAATCACTTTCGATTACGACAAAACCTCTTATCATGAAAAGTAAGATAACCAATTGAAACAAAAATCGACCAAAAGTAAGCCACATGTCACAAGACAGTTCAACTAATCTGCCTCCTAATTGCTGACAACACACCGAAATTGGGCGTGTTTTCAACTTTCTCTCCTCGTCCCATCCACCCACATTCTTATCATATTTATATCTCAGCTATCACTCATCAAGATCTTTTGACGATAAGGAAAGTTTCAAAAGGAATGGGGTCAGTAATACAAAATCTCAAGGTTACCTTTTTGCAAGATAGGCAAAGAACGTTCATTCTTCTTCGTCTTGCAACGACTAG</canonical>
            <polymorphic>CGGGAGAAACTTGCTGAACTAGGGAAAAAAGGTGGGGAGATCCCAGAAAACTACATTACAGCTGTTCCTCTAATAGAAGCCTATCCATACCAGCAACGTCAAGCTCAATTATCTATGTTCCTGTCGATGAAATCAAAAATTTGTTAACTGATAAATTGCTTATCATATTATATCCAATTTTTTATAAGTTGGCATACTTTTGATATATTTTACAATAATCCAAATAAGGGAGCTCAAAGTAAGTGGATTGGGTAATTGAAGGAAATACTGTTTCCATCCTCCCTGTTTCAAAAAATATCTCACACTTTGACCTCAATTATCTTGATTCCTGTTGTAGATATCCAAAAGTTGTCAACTAATAACTTGTTTATAATATTATTACTAACATTTTATTAGTTGACATATTTCTGATATCTTTCACGGGAACCGAGATAACTGAGCTCAAAGTTGAAGGCTGAAATGAGCTTATATTAAAGGAAGTACAGTATTTTTTACCTTTKACCTTATTATCTCGATTCGATTCCTGTCAAAAATTTACAAAAGTTGTCAACTGATCAATTGTTCACTATAATATCACCAACATTTTAGCAATTAACACATTTTGGATATCTTGCATTCAATCTCTAAGTTATAATACAAATGTCAATCTGATAATAGTTTGTAATCACTTTCGATTACGACAAAACCTCTTATCATGAAAAGTAAGATAACCAATTGAAACAAAAATCGACCAAAAGTAAGCCACATGTCACAAGACAGTTCAACTAATCTGCCTCCTAATTGCTGACAACACACCGAAATTGGGCGTGTTTTCAACTTTCTCTCCTCGTCCCATCCACCCACATTCTTATCATATTTATATCTCAGCTATCACTCATCAAGATCTTTTGACGATAAGGAAAGTTTCAAAAGGAATGGGGTCAGTAATACAAAATCTCAAGGTTACCTTTTTGCAAGATAGGCAAAGAACGTTCATTCTTCTTCGTCTTGCAACGACTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGTAATTGAAGGAAATACTGTT</pcr_primer_p1>
		<pcr_primer_p2>CGTAATCGAAAGTGATTACAAAC</pcr_primer_p2>
		<pcr_amplicon_size>430</pcr_amplicon_size>
		<canonical_amplicon>GGGTAATTGAAGGAAATACTGTTTCCATCCTCCCTGTTTCAAAAAATATCTCACACTTTGACCTCAATTATCTTGATTCCTGTTGTAGATATCCAAAAGTTGTCAACTAATAACTTGTTTATAATATTATTACTAACATTTTATTAGTTGACATATTTCTGATATCTTTCACGGGAACCGAGATAACTGAGCTCAAAGTTGAAGGCTGAAATGAGCTTATATTAAAGGAAGTACAGTATTTTTTACCTTTGACCTTATTATCTCGATTCGATTCCTGTCAAAAATTTACAAAAGTTGTCAACTGATCAATTGTTCACTATAATATCACCAACATTTTAGCAATTAACACATTTTGGATATCTTGCATTCAATCTCTAAGTTATAATACAAATGTCAATCTGATAATAGTTTGTAATCACTTTCGATTACG</canonical_amplicon>
		<polymorphic_amplicon>GGGTAATTGAAGGAAATACTGTTTCCATCCTCCCTGTTTCAAAAAATATCTCACACTTTGACCTCAATTATCTTGATTCCTGTTGTAGATATCCAAAAGTTGTCAACTAATAACTTGTTTATAATATTATTACTAACATTTTATTAGTTGACATATTTCTGATATCTTTCACGGGAACCGAGATAACTGAGCTCAAAGTTGAAGGCTGAAATGAGCTTATATTAAAGGAAGTACAGTATTTTTTACCTTTKACCTTATTATCTCGATTCGATTCCTGTCAAAAATTTACAAAAGTTGTCAACTGATCAATTGTTCACTATAATATCACCAACATTTTAGCAATTAACACATTTTGGATATCTTGCATTCAATCTCTAAGTTATAATACAAATGTCAATCTGATAATAGTTTGTAATCACTTTCGATTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33939</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>67959</contig_pos>
        <strand></strand>
        <context>tgatagaagc[G/A]catcctatac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAAACCGTCTAATAGGAAGTTTATCTACCGTAAATGCTCTGATAGAAGC</left_flank>
        <right_flank>CATCCTATACGTGCCCTTTGAGGTTAATTATCTCGATTCATGTGGAAGAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAGCTATTCGACTATGGGGATCTTGATGGACTCCAGCAAATGGCTCCATGTGAAAAGGAAGCCTAGTGCTTGTCCTTGTGGGGTTCATACCGCTCGTTCCTGCTTCGTACATGTCTTTGAGTGACAGCATTAAGGCATTCGTGTGATATTGAGAGATCTCCTGCAAAAAAAGCAAAAGTAGTTTTTTCTTTAGAAGTTTGAAGATGAAGTGGGGAATTTACTATCAGGCTACACGCATACATATTTAAAAGGGAATTTTCAAAAGATCGAGGTTCTTCACGGATCACTGAAAGGATTCCGGAAGTCGTATGGAATTGAATGGTCACTTGAACTTTTAAAATGAATCACTTTCCTTTATTTTGAGTTTGTCTACACTTCATGGTCCGTTGAACTCAGATTTCTGATGTATGGTATGTGCATCAACATCAAATTTTACTTATTTGCTGTAAAAACCGTCTAATAGGAAGTTTATCTACCGTAAATGCTCTGATAGAAGCGCATCCTATACGTGCCCTTTGAGGTTAATTATCTCGATTCATGTGGAAGATATCAAAAGAGTGCCAATTGGTGAAATATGGGTAATATTGAAATAAATAGTTCATCAGTTGAAATATGTTTGATAATTTATAAAGGAACCGAGATATTTCAGCTCAAGTTTGAAGTGCTGGGCTTCGATTTGAGCAATTATGTCCATGTAGTCATCTACTTTGAGCGAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGTGAAAATGTTTCCAATGTTATGATAAATTTTTTAACAGTTGACTATTTCCCGAAATTTTGCACGGGAATCGAGTTAAATTGGCTCAAAGCTGATATTCTCAAAGAATTCTTTTTGAGTGTATACGGCAACTTGTCGTTAAAGAATTATGAGTTAAAGAATTATTTTTTGAATATAATTGTTCATCATTTCAGAATCAAAAATTATCTCAAATCAACAAGTGCTTGTTACCGTATTACTG</canonical>
            <polymorphic>TCCAGCTATTCGACTATGGGGATCTTGATGGACTCCAGCAAATGGCTCCATGTGAAAAGGAAGCCTAGTGCTTGTCCTTGTGGGGTTCATACCGCTCGTTCCTGCTTCGTACATGTCTTTGAGTGACAGCATTAAGGCATTCGTGTGATATTGAGAGATCTCCTGCAAAAAAAGCAAAAGTAGTTTTTTCTTTAGAAGTTTGAAGATGAAGTGGGGAATTTACTATCAGGCTACACGCATACATATTTAAAAGGGAATTTTCAAAAGATCGAGGTTCTTCACGGATCACTGAAAGGATTCCGGAAGTCGTATGGAATTGAATGGTCACTTGAACTTTTAAAATGAATCACTTTCCTTTATTTTGAGTTTGTCTACACTTCATGGTCCGTTGAACTCAGATTTCTGATGTATGGTATGTGCATCAACATCAAATTTTACTTATTTGCTGTAAAAACCGTCTAATAGGAAGTTTATCTACCGTAAATGCTCTGATAGAAGCRCATCCTATACGTGCCCTTTGAGGTTAATTATCTCGATTCATGTGGAAGATATCAAAAGAGTGCCAATTGGTGAAATATGGGTAATATTGAAATAAATAGTTCATCAGTTGAAATATGTTTGATAATTTATAAAGGAACCGAGATATTTCAGCTCAAGTTTGAAGTGCTGGGCTTCGATTTGAGCAATTATGTCCATGTAGTCATCTACTTTGAGCGAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGTGAAAATGTTTCCAATGTTATGATAAATTTTTTAACAGTTGACTATTTCCCGAAATTTTGCACGGGAATCGAGTTAAATTGGCTCAAAGCTGATATTCTCAAAGAATTCTTTTTGAGTGTATACGGCAACTTGTCGTTAAAGAATTATGAGTTAAAGAATTATTTTTTGAATATAATTGTTCATCATTTCAGAATCAAAAATTATCTCAAATCAACAAGTGCTTGTTACCGTATTACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTAAAAACCGTCTAATAGGAAGT</pcr_primer_p1>
		<pcr_primer_p2>TACATGGACATAATTGCTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TGTAAAAACCGTCTAATAGGAAGTTTATCTACCGTAAATGCTCTGATAGAAGCGCATCCTATACGTGCCCTTTGAGGTTAATTATCTCGATTCATGTGGAAGATATCAAAAGAGTGCCAATTGGTGAAATATGGGTAATATTGAAATAAATAGTTCATCAGTTGAAATATGTTTGATAATTTATAAAGGAACCGAGATATTTCAGCTCAAGTTTGAAGTGCTGGGCTTCGATTTGAGCAATTATGTCCATGTA</canonical_amplicon>
		<polymorphic_amplicon>TGTAAAAACCGTCTAATAGGAAGTTTATCTACCGTAAATGCTCTGATAGAAGCRCATCCTATACGTGCCCTTTGAGGTTAATTATCTCGATTCATGTGGAAGATATCAAAAGAGTGCCAATTGGTGAAATATGGGTAATATTGAAATAAATAGTTCATCAGTTGAAATATGTTTGATAATTTATAAAGGAACCGAGATATTTCAGCTCAAGTTTGAAGTGCTGGGCTTCGATTTGAGCAATTATGTCCATGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33940</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>68050</contig_pos>
        <strand></strand>
        <context>gtaatattga[A/G]ataaatagtt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTGGAAGATATCAAAAGAGTGCCAATTGGTGAAATATGGGTAATATTGA</left_flank>
        <right_flank>ATAAATAGTTCATCAGTTGAAATATGTTTGATAATTTATAAAGGAACCGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGCTCGTTCCTGCTTCGTACATGTCTTTGAGTGACAGCATTAAGGCATTCGTGTGATATTGAGAGATCTCCTGCAAAAAAAGCAAAAGTAGTTTTTTCTTTAGAAGTTTGAAGATGAAGTGGGGAATTTACTATCAGGCTACACGCATACATATTTAAAAGGGAATTTTCAAAAGATCGAGGTTCTTCACGGATCACTGAAAGGATTCCGGAAGTCGTATGGAATTGAATGGTCACTTGAACTTTTAAAATGAATCACTTTCCTTTATTTTGAGTTTGTCTACACTTCATGGTCCGTTGAACTCAGATTTCTGATGTATGGTATGTGCATCAACATCAAATTTTACTTATTTGCTGTAAAAACCGTCTAATAGGAAGTTTATCTACCGTAAATGCTCTGATAGAAGCGCATCCTATACGTGCCCTTTGAGGTTAATTATCTCGATTCATGTGGAAGATATCAAAAGAGTGCCAATTGGTGAAATATGGGTAATATTGAAATAAATAGTTCATCAGTTGAAATATGTTTGATAATTTATAAAGGAACCGAGATATTTCAGCTCAAGTTTGAAGTGCTGGGCTTCGATTTGAGCAATTATGTCCATGTAGTCATCTACTTTGAGCGAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGTGAAAATGTTTCCAATGTTATGATAAATTTTTTAACAGTTGACTATTTCCCGAAATTTTGCACGGGAATCGAGTTAAATTGGCTCAAAGCTGATATTCTCAAAGAATTCTTTTTGAGTGTATACGGCAACTTGTCGTTAAAGAATTATGAGTTAAAGAATTATTTTTTGAATATAATTGTTCATCATTTCAGAATCAAAAATTATCTCAAATCAACAAGTGCTTGTTACCGTATTACTGTATCTTAAAACTTCTAAGAGAAAACACGAAATAAAGTATTCCACATTCTAACGTTAGCCTTCTAACGTTAAAAGGTTCTGTCGAACCGTCG</canonical>
            <polymorphic>CCGCTCGTTCCTGCTTCGTACATGTCTTTGAGTGACAGCATTAAGGCATTCGTGTGATATTGAGAGATCTCCTGCAAAAAAAGCAAAAGTAGTTTTTTCTTTAGAAGTTTGAAGATGAAGTGGGGAATTTACTATCAGGCTACACGCATACATATTTAAAAGGGAATTTTCAAAAGATCGAGGTTCTTCACGGATCACTGAAAGGATTCCGGAAGTCGTATGGAATTGAATGGTCACTTGAACTTTTAAAATGAATCACTTTCCTTTATTTTGAGTTTGTCTACACTTCATGGTCCGTTGAACTCAGATTTCTGATGTATGGTATGTGCATCAACATCAAATTTTACTTATTTGCTGTAAAAACCGTCTAATAGGAAGTTTATCTACCGTAAATGCTCTGATAGAAGCGCATCCTATACGTGCCCTTTGAGGTTAATTATCTCGATTCATGTGGAAGATATCAAAAGAGTGCCAATTGGTGAAATATGGGTAATATTGARATAAATAGTTCATCAGTTGAAATATGTTTGATAATTTATAAAGGAACCGAGATATTTCAGCTCAAGTTTGAAGTGCTGGGCTTCGATTTGAGCAATTATGTCCATGTAGTCATCTACTTTGAGCGAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGTGAAAATGTTTCCAATGTTATGATAAATTTTTTAACAGTTGACTATTTCCCGAAATTTTGCACGGGAATCGAGTTAAATTGGCTCAAAGCTGATATTCTCAAAGAATTCTTTTTGAGTGTATACGGCAACTTGTCGTTAAAGAATTATGAGTTAAAGAATTATTTTTTGAATATAATTGTTCATCATTTCAGAATCAAAAATTATCTCAAATCAACAAGTGCTTGTTACCGTATTACTGTATCTTAAAACTTCTAAGAGAAAACACGAAATAAAGTATTCCACATTCTAACGTTAGCCTTCTAACGTTAAAAGGTTCTGTCGAACCGTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACCGTCTAATAGGAAGTTTATC</pcr_primer_p1>
		<pcr_primer_p2>TACATGGACATAATTGCTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAACCGTCTAATAGGAAGTTTATCTACCGTAAATGCTCTGATAGAAGCGCATCCTATACGTGCCCTTTGAGGTTAATTATCTCGATTCATGTGGAAGATATCAAAAGAGTGCCAATTGGTGAAATATGGGTAATATTGAAATAAATAGTTCATCAGTTGAAATATGTTTGATAATTTATAAAGGAACCGAGATATTTCAGCTCAAGTTTGAAGTGCTGGGCTTCGATTTGAGCAATTATGTCCATGTA</canonical_amplicon>
		<polymorphic_amplicon>AAACCGTCTAATAGGAAGTTTATCTACCGTAAATGCTCTGATAGAAGCGCATCCTATACGTGCCCTTTGAGGTTAATTATCTCGATTCATGTGGAAGATATCAAAAGAGTGCCAATTGGTGAAATATGGGTAATATTGARATAAATAGTTCATCAGTTGAAATATGTTTGATAATTTATAAAGGAACCGAGATATTTCAGCTCAAGTTTGAAGTGCTGGGCTTCGATTTGAGCAATTATGTCCATGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33941</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>68135</contig_pos>
        <strand>+</strand>
        <context>gctgggCTTC[C/G]ATTTGAGCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTATAAAGGAACCGAGATATTTCAGCTCAAGTTTGAAGTGCTGGGCTTC</left_flank>
        <right_flank>ATTTGAGCAATTATGTCCATGTAGTCATCTACTTTGAGCGAATTTATCTC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGTAGTTTTTTCTTTAGAAGTTTGAAGATGAAGTGGGGAATTTACTATCAGGCTACACGCATACATATTTAAAAGGGAATTTTCAAAAGATCGAGGTTCTTCACGGATCACTGAAAGGATTCCGGAAGTCGTATGGAATTGAATGGTCACTTGAACTTTTAAAATGAATCACTTTCCTTTATTTTGAGTTTGTCTACACTTCATGGTCCGTTGAACTCAGATTTCTGATGTATGGTATGTGCATCAACATCAAATTTTACTTATTTGCTGTAAAAACCGTCTAATAGGAAGTTTATCTACCGTAAATGCTCTGATAGAAGCGCATCCTATACGTGCCCTTTGAGGTTAATTATCTCGATTCATGTGGAAGATATCAAAAGAGTGCCAATTGGTGAAATATGGGTAATATTGAAATAAATAGTTCATCAGTTGAAATATGTTTGATAATTTATAAAGGAACCGAGATATTTCAGCTCAAGTTTGAAGTGCTGGGCTTCGATTTGAGCAATTATGTCCATGTAGTCATCTACTTTGAGCGAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGTGAAAATGTTTCCAATGTTATGATAAATTTTTTAACAGTTGACTATTTCCCGAAATTTTGCACGGGAATCGAGTTAAATTGGCTCAAAGCTGATATTCTCAAAGAATTCTTTTTGAGTGTATACGGCAACTTGTCGTTAAAGAATTATGAGTTAAAGAATTATTTTTTGAATATAATTGTTCATCATTTCAGAATCAAAAATTATCTCAAATCAACAAGTGCTTGTTACCGTATTACTGTATCTTAAAACTTCTAAGAGAAAACACGAAATAAAGTATTCCACATTCTAACGTTAGCCTTCTAACGTTAAAAGGTTCTGTCGAACCGTCGACGTTGAGCTTAATTATCTCGTCTTCTGTGGGAGATATCAAAAATCTGTCAACTGATAAAACGTTTACAATATTATTATTAATAT</canonical>
            <polymorphic>AAAGTAGTTTTTTCTTTAGAAGTTTGAAGATGAAGTGGGGAATTTACTATCAGGCTACACGCATACATATTTAAAAGGGAATTTTCAAAAGATCGAGGTTCTTCACGGATCACTGAAAGGATTCCGGAAGTCGTATGGAATTGAATGGTCACTTGAACTTTTAAAATGAATCACTTTCCTTTATTTTGAGTTTGTCTACACTTCATGGTCCGTTGAACTCAGATTTCTGATGTATGGTATGTGCATCAACATCAAATTTTACTTATTTGCTGTAAAAACCGTCTAATAGGAAGTTTATCTACCGTAAATGCTCTGATAGAAGCGCATCCTATACGTGCCCTTTGAGGTTAATTATCTCGATTCATGTGGAAGATATCAAAAGAGTGCCAATTGGTGAAATATGGGTAATATTGAAATAAATAGTTCATCAGTTGAAATATGTTTGATAATTTATAAAGGAACCGAGATATTTCAGCTCAAGTTTGAAGTGCTGGGCTTCSATTTGAGCAATTATGTCCATGTAGTCATCTACTTTGAGCGAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGTGAAAATGTTTCCAATGTTATGATAAATTTTTTAACAGTTGACTATTTCCCGAAATTTTGCACGGGAATCGAGTTAAATTGGCTCAAAGCTGATATTCTCAAAGAATTCTTTTTGAGTGTATACGGCAACTTGTCGTTAAAGAATTATGAGTTAAAGAATTATTTTTTGAATATAATTGTTCATCATTTCAGAATCAAAAATTATCTCAAATCAACAAGTGCTTGTTACCGTATTACTGTATCTTAAAACTTCTAAGAGAAAACACGAAATAAAGTATTCCACATTCTAACGTTAGCCTTCTAACGTTAAAAGGTTCTGTCGAACCGTCGACGTTGAGCTTAATTATCTCGTCTTCTGTGGGAGATATCAAAAATCTGTCAACTGATAAAACGTTTACAATATTATTATTAATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>264 251 156 141 94 86 8</canonical_bands>
                <polymorphic_bands>297 264 251 94 86 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACCGTCTAATAGGAAGTTTATC</pcr_primer_p1>
		<pcr_primer_p2>GCCGTATACACTCAAAAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>AAACCGTCTAATAGGAAGTTTATCTACCGTAAATGCTCTGATAGAAGCGCATCCTATACGTGCCCTTTGAGGTTAATTATCTCGATTCATGTGGAAGATATCAAAAGAGTGCCAATTGGTGAAATATGGGTAATATTGAAATAAATAGTTCATCAGTTGAAATATGTTTGATAATTTATAAAGGAACCGAGATATTTCAGCTCAAGTTTGAAGTGCTGGGCTTCGATTTGAGCAATTATGTCCATGTAGTCATCTACTTTGAGCGAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGTGAAAATGTTTCCAATGTTATGATAAATTTTTTAACAGTTGACTATTTCCCGAAATTTTGCACGGGAATCGAGTTAAATTGGCTCAAAGCTGATATTCTCAAAGAATTCTTTTTGAGTGTATACGGC</canonical_amplicon>
		<polymorphic_amplicon>AAACCGTCTAATAGGAAGTTTATCTACCGTAAATGCTCTGATAGAAGCGCATCCTATACGTGCCCTTTGAGGTTAATTATCTCGATTCATGTGGAAGATATCAAAAGAGTGCCAATTGGTGAAATATGGGTAATATTGAAATAAATAGTTCATCAGTTGAAATATGTTTGATAATTTATAAAGGAACCGAGATATTTCAGCTCAAGTTTGAAGTGCTGGGCTTCSATTTGAGCAATTATGTCCATGTAGTCATCTACTTTGAGCGAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGTGAAAATGTTTCCAATGTTATGATAAATTTTTTAACAGTTGACTATTTCCCGAAATTTTGCACGGGAATCGAGTTAAATTGGCTCAAAGCTGATATTCTCAAAGAATTCTTTTTGAGTGTATACGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33942</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>75507</contig_pos>
        <strand></strand>
        <context>attttttttt[A/T]atttaaaaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGTTTTAGAAAATCCTACTGATGTCTTACTTTTCCGAGAATTTTTTTTT</left_flank>
        <right_flank>ATTTAAAAATGTATTTTTCAAGAATTCTCAGGCTCGCTCAGGGACAGGAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGCAAACGACCCAATTCATTCCGACTTATGCGACCACTTTCAACGTAGCTAATGTGAGTTTGAGAAAAAGAAGAAAAAAACTAGGGAAAAACATATTGTTCCGTTTTTCAGACTCATTAGTACATCTGGAAAATGTTAGTTGAATAGTGTTCAACATTGTAAACCAACCTCCAAAACCAAATCAAAAATTTATTTTTCTTCAGGATCCTGCCTACCACCCCGATCATCCGATGAACCGTCCAAATGGACAACGCCAGGATGAGTATCAAAGCGGTAACGAGTCAACATCGGCTAACTATATGCAATTCGTTCCGTTTGTGGCTCCAATCGTGGAGAGCCAGGCTCACGCATCGGCTTCCTACACTGCCAACTGGGTCAGCTCCACATCAAGCATTCCACCGGAAATGAAGGATAAACCGGAGGTACTTTATCACGTTATGCGGAAAGTTGTTTTAGAAAATCCTACTGATGTCTTACTTTTCCGAGAATTTTTTTTTAATTTAAAAATGTATTTTTCAAGAATTCTCAGGCTCGCTCAGGGACAGGATCGGGCCTGTTTATGCTTGGTACGACCAGGCTCGATCGTGCCCAAACCAGACTGGGCCCGGTCAGGCTCAATCAGGACCAAGCCATGTTAAGCTCGATCAAGAGTAGACCCGGTCTGTCTCTACCATGCTCGATTAGAGCCAGGCTCGGTTAGGCTCGACCAGGCAAGTTCAGGCACGGTCATGACTAGGCCCGATCAGGATCGGTCAGAACAAGATCTGGTCAGGTCCGGCCCGGCCCGATCAAATTGAGACCCGGTCATGCTAGGTCAAACTCAATGAGACCAAGGCTCCGTCAAGCTTGGTTAGGCTCGGTCAGGTATGATCAGGACCCGGCACTATCCGGCTCAATCAGGACCCGGCACTATCCGGCTCAATCAGGACCCGGCACTATCCGGCTTAATCGGGACCATGATCGGTCAGGTTCGAGCAGGCTAGGTCAAGCTAGATGAG</canonical>
            <polymorphic>ACAGCAAACGACCCAATTCATTCCGACTTATGCGACCACTTTCAACGTAGCTAATGTGAGTTTGAGAAAAAGAAGAAAAAAACTAGGGAAAAACATATTGTTCCGTTTTTCAGACTCATTAGTACATCTGGAAAATGTTAGTTGAATAGTGTTCAACATTGTAAACCAACCTCCAAAACCAAATCAAAAATTTATTTTTCTTCAGGATCCTGCCTACCACCCCGATCATCCGATGAACCGTCCAAATGGACAACGCCAGGATGAGTATCAAAGCGGTAACGAGTCAACATCGGCTAACTATATGCAATTCGTTCCGTTTGTGGCTCCAATCGTGGAGAGCCAGGCTCACGCATCGGCTTCCTACACTGCCAACTGGGTCAGCTCCACATCAAGCATTCCACCGGAAATGAAGGATAAACCGGAGGTACTTTATCACGTTATGCGGAAAGTTGTTTTAGAAAATCCTACTGATGTCTTACTTTTCCGAGAATTTTTTTTTWATTTAAAAATGTATTTTTCAAGAATTCTCAGGCTCGCTCAGGGACAGGATCGGGCCTGTTTATGCTTGGTACGACCAGGCTCGATCGTGCCCAAACCAGACTGGGCCCGGTCAGGCTCAATCAGGACCAAGCCATGTTAAGCTCGATCAAGAGTAGACCCGGTCTGTCTCTACCATGCTCGATTAGAGCCAGGCTCGGTTAGGCTCGACCAGGCAAGTTCAGGCACGGTCATGACTAGGCCCGATCAGGATCGGTCAGAACAAGATCTGGTCAGGTCCGGCCCGGCCCGATCAAATTGAGACCCGGTCATGCTAGGTCAAACTCAATGAGACCAAGGCTCCGTCAAGCTTGGTTAGGCTCGGTCAGGTATGATCAGGACCCGGCACTATCCGGCTCAATCAGGACCCGGCACTATCCGGCTCAATCAGGACCCGGCACTATCCGGCTTAATCGGGACCATGATCGGTCAGGTTCGAGCAGGCTAGGTCAAGCTAGATGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>498 310 134 53 5</canonical_bands>
                <polymorphic_bands>503 310 134 53</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>271 207 183 174 117 23 14 11</canonical_bands>
                <polymorphic_bands>271 207 183 174 117 34 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAACCGGAGGTACTTTATCAC</pcr_primer_p1>
		<pcr_primer_p2>CTACTCTTGATCGAGCTTAACAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATAAACCGGAGGTACTTTATCACGTTATGCGGAAAGTTGTTTTAGAAAATCCTACTGATGTCTTACTTTTCCGAGAATTTTTTTTTAATTTAAAAATGTATTTTTCAAGAATTCTCAGGCTCGCTCAGGGACAGGATCGGGCCTGTTTATGCTTGGTACGACCAGGCTCGATCGTGCCCAAACCAGACTGGGCCCGGTCAGGCTCAATCAGGACCAAGCCATGTTAAGCTCGATCAAGAGTAG</canonical_amplicon>
		<polymorphic_amplicon>ATAAACCGGAGGTACTTTATCACGTTATGCGGAAAGTTGTTTTAGAAAATCCTACTGATGTCTTACTTTTCCGAGAATTTTTTTTTWATTTAAAAATGTATTTTTCAAGAATTCTCAGGCTCGCTCAGGGACAGGATCGGGCCTGTTTATGCTTGGTACGACCAGGCTCGATCGTGCCCAAACCAGACTGGGCCCGGTCAGGCTCAATCAGGACCAAGCCATGTTAAGCTCGATCAAGAGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33943</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>75557</contig_pos>
        <strand>+</strand>
        <context>AGGGACAGGA[C/T]CGGGCCTGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTAAAAATGTATTTTTCAAGAATTCTCAGGCTCGCTCAGGGACAGGA</left_flank>
        <right_flank>CGGGCCTGTTTATGCTTGGTACGACCAGGCTCGATCGTGCCCAAACCAGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAATGTGAGTTTGAGAAAAAGAAGAAAAAAACTAGGGAAAAACATATTGTTCCGTTTTTCAGACTCATTAGTACATCTGGAAAATGTTAGTTGAATAGTGTTCAACATTGTAAACCAACCTCCAAAACCAAATCAAAAATTTATTTTTCTTCAGGATCCTGCCTACCACCCCGATCATCCGATGAACCGTCCAAATGGACAACGCCAGGATGAGTATCAAAGCGGTAACGAGTCAACATCGGCTAACTATATGCAATTCGTTCCGTTTGTGGCTCCAATCGTGGAGAGCCAGGCTCACGCATCGGCTTCCTACACTGCCAACTGGGTCAGCTCCACATCAAGCATTCCACCGGAAATGAAGGATAAACCGGAGGTACTTTATCACGTTATGCGGAAAGTTGTTTTAGAAAATCCTACTGATGTCTTACTTTTCCGAGAATTTTTTTTTAATTTAAAAATGTATTTTTCAAGAATTCTCAGGCTCGCTCAGGGACAGGATCGGGCCTGTTTATGCTTGGTACGACCAGGCTCGATCGTGCCCAAACCAGACTGGGCCCGGTCAGGCTCAATCAGGACCAAGCCATGTTAAGCTCGATCAAGAGTAGACCCGGTCTGTCTCTACCATGCTCGATTAGAGCCAGGCTCGGTTAGGCTCGACCAGGCAAGTTCAGGCACGGTCATGACTAGGCCCGATCAGGATCGGTCAGAACAAGATCTGGTCAGGTCCGGCCCGGCCCGATCAAATTGAGACCCGGTCATGCTAGGTCAAACTCAATGAGACCAAGGCTCCGTCAAGCTTGGTTAGGCTCGGTCAGGTATGATCAGGACCCGGCACTATCCGGCTCAATCAGGACCCGGCACTATCCGGCTCAATCAGGACCCGGCACTATCCGGCTTAATCGGGACCATGATCGGTCAGGTTCGAGCAGGCTAGGTCAAGCTAGATGAGGACCATGCTTGGTCAAACTTGGTCAGGTTCGGTCAGGCGCGGCTAGGATA</canonical>
            <polymorphic>CTAATGTGAGTTTGAGAAAAAGAAGAAAAAAACTAGGGAAAAACATATTGTTCCGTTTTTCAGACTCATTAGTACATCTGGAAAATGTTAGTTGAATAGTGTTCAACATTGTAAACCAACCTCCAAAACCAAATCAAAAATTTATTTTTCTTCAGGATCCTGCCTACCACCCCGATCATCCGATGAACCGTCCAAATGGACAACGCCAGGATGAGTATCAAAGCGGTAACGAGTCAACATCGGCTAACTATATGCAATTCGTTCCGTTTGTGGCTCCAATCGTGGAGAGCCAGGCTCACGCATCGGCTTCCTACACTGCCAACTGGGTCAGCTCCACATCAAGCATTCCACCGGAAATGAAGGATAAACCGGAGGTACTTTATCACGTTATGCGGAAAGTTGTTTTAGAAAATCCTACTGATGTCTTACTTTTCCGAGAATTTTTTTTTAATTTAAAAATGTATTTTTCAAGAATTCTCAGGCTCGCTCAGGGACAGGAYCGGGCCTGTTTATGCTTGGTACGACCAGGCTCGATCGTGCCCAAACCAGACTGGGCCCGGTCAGGCTCAATCAGGACCAAGCCATGTTAAGCTCGATCAAGAGTAGACCCGGTCTGTCTCTACCATGCTCGATTAGAGCCAGGCTCGGTTAGGCTCGACCAGGCAAGTTCAGGCACGGTCATGACTAGGCCCGATCAGGATCGGTCAGAACAAGATCTGGTCAGGTCCGGCCCGGCCCGATCAAATTGAGACCCGGTCATGCTAGGTCAAACTCAATGAGACCAAGGCTCCGTCAAGCTTGGTTAGGCTCGGTCAGGTATGATCAGGACCCGGCACTATCCGGCTCAATCAGGACCCGGCACTATCCGGCTCAATCAGGACCCGGCACTATCCGGCTTAATCGGGACCATGATCGGTCAGGTTCGAGCAGGCTAGGTCAAGCTAGATGAGGACCATGCTTGGTCAAACTTGGTCAGGTTCGGTCAGGCGCGGCTAGGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>324 155 98 90 90 82 62 35 25 18 15 6</canonical_bands>
                <polymorphic_bands>359 155 98 90 90 82 62 25 18 15 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAACCGGAGGTACTTTATCAC</pcr_primer_p1>
		<pcr_primer_p2>CTACTCTTGATCGAGCTTAACAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATAAACCGGAGGTACTTTATCACGTTATGCGGAAAGTTGTTTTAGAAAATCCTACTGATGTCTTACTTTTCCGAGAATTTTTTTTTAATTTAAAAATGTATTTTTCAAGAATTCTCAGGCTCGCTCAGGGACAGGATCGGGCCTGTTTATGCTTGGTACGACCAGGCTCGATCGTGCCCAAACCAGACTGGGCCCGGTCAGGCTCAATCAGGACCAAGCCATGTTAAGCTCGATCAAGAGTAG</canonical_amplicon>
		<polymorphic_amplicon>ATAAACCGGAGGTACTTTATCACGTTATGCGGAAAGTTGTTTTAGAAAATCCTACTGATGTCTTACTTTTCCGAGAATTTTTTTTTAATTTAAAAATGTATTTTTCAAGAATTCTCAGGCTCGCTCAGGGACAGGAYCGGGCCTGTTTATGCTTGGTACGACCAGGCTCGATCGTGCCCAAACCAGACTGGGCCCGGTCAGGCTCAATCAGGACCAAGCCATGTTAAGCTCGATCAAGAGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33944</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>75692</contig_pos>
        <strand>+</strand>
        <context>ATGCTCGATT[A/G]GAgccaggct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTAAGCTCGATCAAGAGTAGACCCGGTCTGTCTCTACCATGCTCGATT</left_flank>
        <right_flank>GAGCCAGGCTCGGTTAGGCTCGACCAGGCAAGTTCAGGCACGGTCATGAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATTTATTTTTCTTCAGGATCCTGCCTACCACCCCGATCATCCGATGAACCGTCCAAATGGACAACGCCAGGATGAGTATCAAAGCGGTAACGAGTCAACATCGGCTAACTATATGCAATTCGTTCCGTTTGTGGCTCCAATCGTGGAGAGCCAGGCTCACGCATCGGCTTCCTACACTGCCAACTGGGTCAGCTCCACATCAAGCATTCCACCGGAAATGAAGGATAAACCGGAGGTACTTTATCACGTTATGCGGAAAGTTGTTTTAGAAAATCCTACTGATGTCTTACTTTTCCGAGAATTTTTTTTTAATTTAAAAATGTATTTTTCAAGAATTCTCAGGCTCGCTCAGGGACAGGATCGGGCCTGTTTATGCTTGGTACGACCAGGCTCGATCGTGCCCAAACCAGACTGGGCCCGGTCAGGCTCAATCAGGACCAAGCCATGTTAAGCTCGATCAAGAGTAGACCCGGTCTGTCTCTACCATGCTCGATTAGAGCCAGGCTCGGTTAGGCTCGACCAGGCAAGTTCAGGCACGGTCATGACTAGGCCCGATCAGGATCGGTCAGAACAAGATCTGGTCAGGTCCGGCCCGGCCCGATCAAATTGAGACCCGGTCATGCTAGGTCAAACTCAATGAGACCAAGGCTCCGTCAAGCTTGGTTAGGCTCGGTCAGGTATGATCAGGACCCGGCACTATCCGGCTCAATCAGGACCCGGCACTATCCGGCTCAATCAGGACCCGGCACTATCCGGCTTAATCGGGACCATGATCGGTCAGGTTCGAGCAGGCTAGGTCAAGCTAGATGAGGACCATGCTTGGTCAAACTTGGTCAGGTTCGGTCAGGCGCGGCTAGGATAAGGCCCTATCAGACTCGATAAGAAACAGAGCCGGTCAAGCTGTGCAGCCTATTTCAAGCTTGATCAATCTTGGTCAGACTTGGTCAGGCTTGGTCAGGCTTGGCCAGGCTCGGTCAAGCTCGATTAGGACTAGCC</canonical>
            <polymorphic>AAAAATTTATTTTTCTTCAGGATCCTGCCTACCACCCCGATCATCCGATGAACCGTCCAAATGGACAACGCCAGGATGAGTATCAAAGCGGTAACGAGTCAACATCGGCTAACTATATGCAATTCGTTCCGTTTGTGGCTCCAATCGTGGAGAGCCAGGCTCACGCATCGGCTTCCTACACTGCCAACTGGGTCAGCTCCACATCAAGCATTCCACCGGAAATGAAGGATAAACCGGAGGTACTTTATCACGTTATGCGGAAAGTTGTTTTAGAAAATCCTACTGATGTCTTACTTTTCCGAGAATTTTTTTTTAATTTAAAAATGTATTTTTCAAGAATTCTCAGGCTCGCTCAGGGACAGGATCGGGCCTGTTTATGCTTGGTACGACCAGGCTCGATCGTGCCCAAACCAGACTGGGCCCGGTCAGGCTCAATCAGGACCAAGCCATGTTAAGCTCGATCAAGAGTAGACCCGGTCTGTCTCTACCATGCTCGATTRGAGCCAGGCTCGGTTAGGCTCGACCAGGCAAGTTCAGGCACGGTCATGACTAGGCCCGATCAGGATCGGTCAGAACAAGATCTGGTCAGGTCCGGCCCGGCCCGATCAAATTGAGACCCGGTCATGCTAGGTCAAACTCAATGAGACCAAGGCTCCGTCAAGCTTGGTTAGGCTCGGTCAGGTATGATCAGGACCCGGCACTATCCGGCTCAATCAGGACCCGGCACTATCCGGCTCAATCAGGACCCGGCACTATCCGGCTTAATCGGGACCATGATCGGTCAGGTTCGAGCAGGCTAGGTCAAGCTAGATGAGGACCATGCTTGGTCAAACTTGGTCAGGTTCGGTCAGGCGCGGCTAGGATAAGGCCCTATCAGACTCGATAAGAAACAGAGCCGGTCAAGCTGTGCAGCCTATTTCAAGCTTGATCAATCTTGGTCAGACTTGGTCAGGCTTGGTCAGGCTTGGCCAGGCTCGGTCAAGCTCGATTAGGACTAGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGTTAAGCTCGATCAAGAG</pcr_primer_p1>
		<pcr_primer_p2>TCAAAAATTACTGTAGGCTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>585</pcr_amplicon_size>
		<canonical_amplicon>CATGTTAAGCTCGATCAAGAGTAGACCCGGTCTGTCTCTACCATGCTCGATTAGAGCCAGGCTCGGTTAGGCTCG</canonical_amplicon>
		<polymorphic_amplicon>CATGTTAAGCTCGATCAAGAGTAGACCCGGTCTGTCTCTACCATGCTCGATTRGAGCCAGGCTCGGTTAGGCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33945</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>75955</contig_pos>
        <strand>+</strand>
        <context>CTATCCGGCT[C/T]AATCGGGACC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCAGGACCCGGCACTATCCGGCTCAATCAGGACCCGGCACTATCCGGCT</left_flank>
        <right_flank>AATCGGGACCATGATCGGTCAGGTTCGAGCAGGCTAGGTCAAGCTAGATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTGTTTTAGAAAATCCTACTGATGTCTTACTTTTCCGAGAATTTTTTTTTAATTTAAAAATGTATTTTTCAAGAATTCTCAGGCTCGCTCAGGGACAGGATCGGGCCTGTTTATGCTTGGTACGACCAGGCTCGATCGTGCCCAAACCAGACTGGGCCCGGTCAGGCTCAATCAGGACCAAGCCATGTTAAGCTCGATCAAGAGTAGACCCGGTCTGTCTCTACCATGCTCGATTAGAGCCAGGCTCGGTTAGGCTCGACCAGGCAAGTTCAGGCACGGTCATGACTAGGCCCGATCAGGATCGGTCAGAACAAGATCTGGTCAGGTCCGGCCCGGCCCGATCAAATTGAGACCCGGTCATGCTAGGTCAAACTCAATGAGACCAAGGCTCCGTCAAGCTTGGTTAGGCTCGGTCAGGTATGATCAGGACCCGGCACTATCCGGCTCAATCAGGACCCGGCACTATCCGGCTCAATCAGGACCCGGCACTATCCGGCTTAATCGGGACCATGATCGGTCAGGTTCGAGCAGGCTAGGTCAAGCTAGATGAGGACCATGCTTGGTCAAACTTGGTCAGGTTCGGTCAGGCGCGGCTAGGATAAGGCCCTATCAGACTCGATAAGAAACAGAGCCGGTCAAGCTGTGCAGCCTATTTCAAGCTTGATCAATCTTGGTCAGACTTGGTCAGGCTTGGTCAGGCTTGGCCAGGCTCGGTCAAGCTCGATTAGGACTAGCCTCGGTCAGGTCTGAGCCTACAGTAATTTTTGATTATTTTTCAAAAAATGTTCGAAGCCTATTGAAAAACTCTGCAAAAGCTTGCAAAGAACGTATCGTCGTTAAAAAAAGTTTTCATTTAAAAAAAAATAGAAATTTTCTGACAATTCTAATTCTTTTTCGAATATGAAAAACCATGGCCAGCCAGGATGGGCCGGGCTTTAGCAAACTTGGGGCACGCGGGGGATTTTTATGTATGCTATCAGTTAGCACCAAAGCCAATTT</canonical>
            <polymorphic>GTTGTTTTAGAAAATCCTACTGATGTCTTACTTTTCCGAGAATTTTTTTTTAATTTAAAAATGTATTTTTCAAGAATTCTCAGGCTCGCTCAGGGACAGGATCGGGCCTGTTTATGCTTGGTACGACCAGGCTCGATCGTGCCCAAACCAGACTGGGCCCGGTCAGGCTCAATCAGGACCAAGCCATGTTAAGCTCGATCAAGAGTAGACCCGGTCTGTCTCTACCATGCTCGATTAGAGCCAGGCTCGGTTAGGCTCGACCAGGCAAGTTCAGGCACGGTCATGACTAGGCCCGATCAGGATCGGTCAGAACAAGATCTGGTCAGGTCCGGCCCGGCCCGATCAAATTGAGACCCGGTCATGCTAGGTCAAACTCAATGAGACCAAGGCTCCGTCAAGCTTGGTTAGGCTCGGTCAGGTATGATCAGGACCCGGCACTATCCGGCTCAATCAGGACCCGGCACTATCCGGCTCAATCAGGACCCGGCACTATCCGGCTYAATCGGGACCATGATCGGTCAGGTTCGAGCAGGCTAGGTCAAGCTAGATGAGGACCATGCTTGGTCAAACTTGGTCAGGTTCGGTCAGGCGCGGCTAGGATAAGGCCCTATCAGACTCGATAAGAAACAGAGCCGGTCAAGCTGTGCAGCCTATTTCAAGCTTGATCAATCTTGGTCAGACTTGGTCAGGCTTGGTCAGGCTTGGCCAGGCTCGGTCAAGCTCGATTAGGACTAGCCTCGGTCAGGTCTGAGCCTACAGTAATTTTTGATTATTTTTCAAAAAATGTTCGAAGCCTATTGAAAAACTCTGCAAAAGCTTGCAAAGAACGTATCGTCGTTAAAAAAAGTTTTCATTTAAAAAAAAATAGAAATTTTCTGACAATTCTAATTCTTTTTCGAATATGAAAAACCATGGCCAGCCAGGATGGGCCGGGCTTTAGCAAACTTGGGGCACGCGGGGGATTTTTATGTATGCTATCAGTTAGCACCAAAGCCAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>339 310 145 134 50 17 5</canonical_bands>
                <polymorphic_bands>649 145 134 50 17 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAGCTCGATCAAGAGTAGACC</pcr_primer_p1>
		<pcr_primer_p2>TCAAAAATTACTGTAGGCTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>580</pcr_amplicon_size>
		<canonical_amplicon>TAAGCTCGATCAAGAGTAGACCCGGTCTGTCTCTACCATGCTCGATTAGAGCCAGGCTCGGTTAGGCTCGACCAGGCAAGTTCAGGCACGGTCATGACTAGGCCCGATCAGGATCGGTCAGAACAAGATCTGGTCAGGTCCGGCCCGGCCCGATCAAATTGAGACCCGGTCATGCTAGGTCAAACTCAATGAGACCAAGGCTCCGTCAAGCTTGGTTAGGCTCGGTCAGGTATGATCAGGACCCGGCACTATCCGGCTCAATCAGGACCCGGCACTATCCGGCTCAATCAGGACCCGGCACTATCCGGCTTAATCGGGACCATGATCGGTCAGGTTCGAGCAGGCTAGGTCAAGCTAGATGAGGACCATGCTTGGTCAAACTTGGTCAGGTTCGGTCAGGCGCGGCTAGGATAAGGCCCTATCAGACTCGATAAGAAACAGAGCCGGTCAAGCTGTGCAGCCTATTTCAAGCTTGATCAATCTTGGTCAGACTTGGTCAGGCTTGGTCAGGCTTGGCCAGGCTCGGTCAAGCTCGATTAGGACTAGCCTCGGTCAGGTCTGAGCCTACAGTAATTTTTGA</canonical_amplicon>
		<polymorphic_amplicon>TAAGCTCGATCAAGAGTAGACCCGGTCTGTCTCTACCATGCTCGATTAGAGCCAGGCTCGGTTAGGCTCGACCAGGCAAGTTCAGGCACGGTCATGACTAGGCCCGATCAGGATCGGTCAGAACAAGATCTGGTCAGGTCCGGCCCGGCCCGATCAAATTGAGACCCGGTCATGCTAGGTCAAACTCAATGAGACCAAGGCTCCGTCAAGCTTGGTTAGGCTCGGTCAGGTATGATCAGGACCCGGCACTATCCGGCTCAATCAGGACCCGGCACTATCCGGCTCAATCAGGACCCGGCACTATCCGGCTYAATCGGGACCATGATCGGTCAGGTTCGAGCAGGCTAGGTCAAGCTAGATGAGGACCATGCTTGGTCAAACTTGGTCAGGTTCGGTCAGGCGCGGCTAGGATAAGGCCCTATCAGACTCGATAAGAAACAGAGCCGGTCAAGCTGTGCAGCCTATTTCAAGCTTGATCAATCTTGGTCAGACTTGGTCAGGCTTGGTCAGGCTTGGCCAGGCTCGGTCAAGCTCGATTAGGACTAGCCTCGGTCAGGTCTGAGCCTACAGTAATTTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33946</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>76120</contig_pos>
        <strand></strand>
        <context>ttcaagcttg[A/G]tcaatcttgg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTCGATAAGAAACAGAGCCGGTCAAGCTGTGCAGCCTATTTCAAGCTTG</left_flank>
        <right_flank>TCAATCTTGGTCAGACTTGGTCAGGCTTGGTCAGGCTTGGCCAGGCTCGG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCTCAATCAGGACCAAGCCATGTTAAGCTCGATCAAGAGTAGACCCGGTCTGTCTCTACCATGCTCGATTAGAGCCAGGCTCGGTTAGGCTCGACCAGGCAAGTTCAGGCACGGTCATGACTAGGCCCGATCAGGATCGGTCAGAACAAGATCTGGTCAGGTCCGGCCCGGCCCGATCAAATTGAGACCCGGTCATGCTAGGTCAAACTCAATGAGACCAAGGCTCCGTCAAGCTTGGTTAGGCTCGGTCAGGTATGATCAGGACCCGGCACTATCCGGCTCAATCAGGACCCGGCACTATCCGGCTCAATCAGGACCCGGCACTATCCGGCTTAATCGGGACCATGATCGGTCAGGTTCGAGCAGGCTAGGTCAAGCTAGATGAGGACCATGCTTGGTCAAACTTGGTCAGGTTCGGTCAGGCGCGGCTAGGATAAGGCCCTATCAGACTCGATAAGAAACAGAGCCGGTCAAGCTGTGCAGCCTATTTCAAGCTTGATCAATCTTGGTCAGACTTGGTCAGGCTTGGTCAGGCTTGGCCAGGCTCGGTCAAGCTCGATTAGGACTAGCCTCGGTCAGGTCTGAGCCTACAGTAATTTTTGATTATTTTTCAAAAAATGTTCGAAGCCTATTGAAAAACTCTGCAAAAGCTTGCAAAGAACGTATCGTCGTTAAAAAAAGTTTTCATTTAAAAAAAAATAGAAATTTTCTGACAATTCTAATTCTTTTTCGAATATGAAAAACCATGGCCAGCCAGGATGGGCCGGGCTTTAGCAAACTTGGGGCACGCGGGGGATTTTTATGTATGCTATCAGTTAGCACCAAAGCCAATTTCAAAATTTTTAATAAAATTAATGTAAATCTGTTACACAACCAAATAAGCTGTTGCTTCTTGTGTGGTAAATATTATAGATAATTAATTAATTGCAAAAATCTTAAAGACTACTGAAACTGCTTTGATTGCTTTCGTGTCGGTTTACGTAGACACACGCCACACAA</canonical>
            <polymorphic>GGCTCAATCAGGACCAAGCCATGTTAAGCTCGATCAAGAGTAGACCCGGTCTGTCTCTACCATGCTCGATTAGAGCCAGGCTCGGTTAGGCTCGACCAGGCAAGTTCAGGCACGGTCATGACTAGGCCCGATCAGGATCGGTCAGAACAAGATCTGGTCAGGTCCGGCCCGGCCCGATCAAATTGAGACCCGGTCATGCTAGGTCAAACTCAATGAGACCAAGGCTCCGTCAAGCTTGGTTAGGCTCGGTCAGGTATGATCAGGACCCGGCACTATCCGGCTCAATCAGGACCCGGCACTATCCGGCTCAATCAGGACCCGGCACTATCCGGCTTAATCGGGACCATGATCGGTCAGGTTCGAGCAGGCTAGGTCAAGCTAGATGAGGACCATGCTTGGTCAAACTTGGTCAGGTTCGGTCAGGCGCGGCTAGGATAAGGCCCTATCAGACTCGATAAGAAACAGAGCCGGTCAAGCTGTGCAGCCTATTTCAAGCTTGRTCAATCTTGGTCAGACTTGGTCAGGCTTGGTCAGGCTTGGCCAGGCTCGGTCAAGCTCGATTAGGACTAGCCTCGGTCAGGTCTGAGCCTACAGTAATTTTTGATTATTTTTCAAAAAATGTTCGAAGCCTATTGAAAAACTCTGCAAAAGCTTGCAAAGAACGTATCGTCGTTAAAAAAAGTTTTCATTTAAAAAAAAATAGAAATTTTCTGACAATTCTAATTCTTTTTCGAATATGAAAAACCATGGCCAGCCAGGATGGGCCGGGCTTTAGCAAACTTGGGGCACGCGGGGGATTTTTATGTATGCTATCAGTTAGCACCAAAGCCAATTTCAAAATTTTTAATAAAATTAATGTAAATCTGTTACACAACCAAATAAGCTGTTGCTTCTTGTGTGGTAAATATTATAGATAATTAATTAATTGCAAAAATCTTAAAGACTACTGAAACTGCTTTGATTGCTTTCGTGTCGGTTTACGTAGACACACGCCACACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>502 257 241</canonical_bands>
                <polymorphic_bands>743 257</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>502 151 98 90 82 31 25 15 6</canonical_bands>
                <polymorphic_bands>653 98 90 82 31 25 15 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAGCTCGATCAAGAGTAGACC</pcr_primer_p1>
		<pcr_primer_p2>TCAAAAATTACTGTAGGCTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>580</pcr_amplicon_size>
		<canonical_amplicon>TAAGCTCGATCAAGAGTAGACCCGGTCTGTCTCTACCATGCTCGATTAGAGCCAGGCTCGGTTAGGCTCGACCAGGCAAGTTCAGGCACGGTCATGACTAGGCCCGATCAGGATCGGTCAGAACAAGATCTGGTCAGGTCCGGCCCGGCCCGATCAAATTGAGACCCGGTCATGCTAGGTCAAACTCAATGAGACCAAGGCTCCGTCAAGCTTGGTTAGGCTCGGTCAGGTATGATCAGGACCCGGCACTATCCGGCTCAATCAGGACCCGGCACTATCCGGCTCAATCAGGACCCGGCACTATCCGGCTTAATCGGGACCATGATCGGTCAGGTTCGAGCAGGCTAGGTCAAGCTAGATGAGGACCATGCTTGGTCAAACTTGGTCAGGTTCGGTCAGGCGCGGCTAGGATAAGGCCCTATCAGACTCGATAAGAAACAGAGCCGGTCAAGCTGTGCAGCCTATTTCAAGCTTGATCAATCTTGGTCAGACTTGGTCAGGCTTGGTCAGGCTTGGCCAGGCTCGGTCAAGCTCGATTAGGACTAGCCTCGGTCAGGTCTGAGCCTACAGTAATTTTTGA</canonical_amplicon>
		<polymorphic_amplicon>TAAGCTCGATCAAGAGTAGACCCGGTCTGTCTCTACCATGCTCGATTAGAGCCAGGCTCGGTTAGGCTCGACCAGGCAAGTTCAGGCACGGTCATGACTAGGCCCGATCAGGATCGGTCAGAACAAGATCTGGTCAGGTCCGGCCCGGCCCGATCAAATTGAGACCCGGTCATGCTAGGTCAAACTCAATGAGACCAAGGCTCCGTCAAGCTTGGTTAGGCTCGGTCAGGTATGATCAGGACCCGGCACTATCCGGCTCAATCAGGACCCGGCACTATCCGGCTCAATCAGGACCCGGCACTATCCGGCTTAATCGGGACCATGATCGGTCAGGTTCGAGCAGGCTAGGTCAAGCTAGATGAGGACCATGCTTGGTCAAACTTGGTCAGGTTCGGTCAGGCGCGGCTAGGATAAGGCCCTATCAGACTCGATAAGAAACAGAGCCGGTCAAGCTGTGCAGCCTATTTCAAGCTTGRTCAATCTTGGTCAGACTTGGTCAGGCTTGGTCAGGCTTGGCCAGGCTCGGTCAAGCTCGATTAGGACTAGCCTCGGTCAGGTCTGAGCCTACAGTAATTTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33948</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>126567</contig_pos>
        <strand>+</strand>
        <context>GTATTGCGTC[G/T]GTTTTCTATT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTGATGACGTGGACTGGTACCCCGCGTTTCGCGTTCAACAGTATTGCGTC</left_flank>
        <right_flank>GTTTTCTATTGATTTCCAATTAATAATCAATAACCATTTCAGTGATCTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTTCGGAATCCTGATAGGAACTAAATTTATCTCGCTAATAATGAGAGAAAATTAATTTTCAACATCTCTTAGAAACGATTTATTTCTCCAAGTTTTTCATTTGTTTTCTTCGAAAACATCGGAGCATATTTTTTTTATTCGTTGTCATGTTTCTGAAACATAAATTGTCTTAGTAAAACTATCATAGTTCCGAGAATGTGACGTTTGCTGGAAATCTGTTTGAAGTATTTCCGAAGAAAAGATTGGGATTTTAACCCTTGTGGGCCATATCCGACTACTTGTTGGTTAGATTTATTTGGTTTGTCTGAACCACCTTTTGATATTCTCATCTCGGTAATCTTCCTTGCTAAGTTCTCATAGCACCACACAGACACACAGTTTGGCCTAGATCACAAGACAATCATTTGCCCTGTGGGGAATTTCAGAAAGAGTATGGATGGGAACACCTGATGACGTGGACTGGTACCCCGCGTTTCGCGTTCAACAGTATTGCGTCTGTTTTCTATTGATTTCCAATTAATAATCAATAACCATTTCAGTGATCTAGCTCATTTTCCCATTCTATGCTCATGCCTTTTTTTGTTGAAGAAGGTGGAAGGTTTTTGCCTAAAAACTAAGATATCTTTAGTTTCTTTCTTTATTTTGGCAATCTCAAAAATTGTAAGACAGCTTCTAATAACATTTCTAAAATTCTGATTATTTGTTCATCAATTGATTTTTTTGGCCGTCAGCGCCAAAATTGTACTTTGCTTTCTTTCTACGTCGAGTTGATTTCCTTTTGCGATTTGATCTTATTCTGCGATTTGGTCTTATTCTGCGATTTGATCTCCTTCTGCTATCATTCACATTCTACCATTTTATCATCTTTTCTCCCAATTTGGAAGCTACTGGTTGGTACCAAACTTCTTTTCCCTGCTACTAAGCTTATAAATAGACCTGCATGCATCCACCAGTTAACGGTATCGGTGATTTTTCTTTTAGTATCAATATTTTTTGA</canonical>
            <polymorphic>TATTTTCGGAATCCTGATAGGAACTAAATTTATCTCGCTAATAATGAGAGAAAATTAATTTTCAACATCTCTTAGAAACGATTTATTTCTCCAAGTTTTTCATTTGTTTTCTTCGAAAACATCGGAGCATATTTTTTTTATTCGTTGTCATGTTTCTGAAACATAAATTGTCTTAGTAAAACTATCATAGTTCCGAGAATGTGACGTTTGCTGGAAATCTGTTTGAAGTATTTCCGAAGAAAAGATTGGGATTTTAACCCTTGTGGGCCATATCCGACTACTTGTTGGTTAGATTTATTTGGTTTGTCTGAACCACCTTTTGATATTCTCATCTCGGTAATCTTCCTTGCTAAGTTCTCATAGCACCACACAGACACACAGTTTGGCCTAGATCACAAGACAATCATTTGCCCTGTGGGGAATTTCAGAAAGAGTATGGATGGGAACACCTGATGACGTGGACTGGTACCCCGCGTTTCGCGTTCAACAGTATTGCGTCKGTTTTCTATTGATTTCCAATTAATAATCAATAACCATTTCAGTGATCTAGCTCATTTTCCCATTCTATGCTCATGCCTTTTTTTGTTGAAGAAGGTGGAAGGTTTTTGCCTAAAAACTAAGATATCTTTAGTTTCTTTCTTTATTTTGGCAATCTCAAAAATTGTAAGACAGCTTCTAATAACATTTCTAAAATTCTGATTATTTGTTCATCAATTGATTTTTTTGGCCGTCAGCGCCAAAATTGTACTTTGCTTTCTTTCTACGTCGAGTTGATTTCCTTTTGCGATTTGATCTTATTCTGCGATTTGGTCTTATTCTGCGATTTGATCTCCTTCTGCTATCATTCACATTCTACCATTTTATCATCTTTTCTCCCAATTTGGAAGCTACTGGTTGGTACCAAACTTCTTTTCCCTGCTACTAAGCTTATAAATAGACCTGCATGCATCCACCAGTTAACGGTATCGGTGATTTTTCTTTTAGTATCAATATTTTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCACCTTTTGATATTCTCATCT</pcr_primer_p1>
		<pcr_primer_p2>GAAAATGAGCTAGATCACTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACCACCTTTTGATATTCTCATCTCGGTAATCTTCCTTGCTAAGTTCTCATAGCACCACACAGACACACAGTTTGGCCTAGATCACAAGACAATCATTTGCCCTGTGGGGAATTTCAGAAAGAGTATGGATGGGAACACCTGATGACGTGGACTGGTACCCCGCGTTTCGCGTTCAACAGTATTGCGTCTGTTTTCTATTGATTTCCAATTAATAATCAATAACCATTTCAGTGATCTAGCTCATTTTC</canonical_amplicon>
		<polymorphic_amplicon>ACCACCTTTTGATATTCTCATCTCGGTAATCTTCCTTGCTAAGTTCTCATAGCACCACACAGACACACAGTTTGGCCTAGATCACAAGACAATCATTTGCCCTGTGGGGAATTTCAGAAAGAGTATGGATGGGAACACCTGATGACGTGGACTGGTACCCCGCGTTTCGCGTTCAACAGTATTGCGTCKGTTTTCTATTGATTTCCAATTAATAATCAATAACCATTTCAGTGATCTAGCTCATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33949</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>127088</contig_pos>
        <strand></strand>
        <context>taggtatgat[A/G]gaactcgata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTTTTCTTTTAGTATCAATATTTTTTGACAAACTGAATTAGGTATGAT</left_flank>
        <right_flank>GAACTCGATAACCACAAAACAACACTGTTTAGAAAAATTATTTTGTTGGC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAATCAATAACCATTTCAGTGATCTAGCTCATTTTCCCATTCTATGCTCATGCCTTTTTTTGTTGAAGAAGGTGGAAGGTTTTTGCCTAAAAACTAAGATATCTTTAGTTTCTTTCTTTATTTTGGCAATCTCAAAAATTGTAAGACAGCTTCTAATAACATTTCTAAAATTCTGATTATTTGTTCATCAATTGATTTTTTTGGCCGTCAGCGCCAAAATTGTACTTTGCTTTCTTTCTACGTCGAGTTGATTTCCTTTTGCGATTTGATCTTATTCTGCGATTTGGTCTTATTCTGCGATTTGATCTCCTTCTGCTATCATTCACATTCTACCATTTTATCATCTTTTCTCCCAATTTGGAAGCTACTGGTTGGTACCAAACTTCTTTTCCCTGCTACTAAGCTTATAAATAGACCTGCATGCATCCACCAGTTAACGGTATCGGTGATTTTTCTTTTAGTATCAATATTTTTTGACAAACTGAATTAGGTATGATAGAACTCGATAACCACAAAACAACACTGTTTAGAAAAATTATTTTGTTGGCGAACAAAGTTCCAGACCAAACGGGCTGAAAGAACCACCAGGGCCCGACCTGGCTGGATTGGGAGCTTACTGGTACGTAACTTTGTTGGCAAACGCTGTATCTTGTGGTACTCGTCAAGTTCTATCATATACATTTTAGTTGGTCAATTATTGCTCCTGGGAGAAGTTATCACAGCGCCCTCTAGGCCCGTTTTTGACACGTTTTCAAGTATGCTCCGAAAGTGTATGAGAAATTGTTTATGGTACACCCCACACCTCCAAATATATGGTCAACGTGTTGCAAAAATGAAATAATGATCAGATTTTGGCGTTTTTGGATATATTTTGAACATTTTTGTATTGGTACTATACTTGAATTCCTCTATTTTCCTAAAACAAAAAACTTTAGCAACCACTAAGCACTTCATCAGAAAAGACTAGAATTCGCACTACAAAAACCCCCTCAAAAACC</canonical>
            <polymorphic>AATAATCAATAACCATTTCAGTGATCTAGCTCATTTTCCCATTCTATGCTCATGCCTTTTTTTGTTGAAGAAGGTGGAAGGTTTTTGCCTAAAAACTAAGATATCTTTAGTTTCTTTCTTTATTTTGGCAATCTCAAAAATTGTAAGACAGCTTCTAATAACATTTCTAAAATTCTGATTATTTGTTCATCAATTGATTTTTTTGGCCGTCAGCGCCAAAATTGTACTTTGCTTTCTTTCTACGTCGAGTTGATTTCCTTTTGCGATTTGATCTTATTCTGCGATTTGGTCTTATTCTGCGATTTGATCTCCTTCTGCTATCATTCACATTCTACCATTTTATCATCTTTTCTCCCAATTTGGAAGCTACTGGTTGGTACCAAACTTCTTTTCCCTGCTACTAAGCTTATAAATAGACCTGCATGCATCCACCAGTTAACGGTATCGGTGATTTTTCTTTTAGTATCAATATTTTTTGACAAACTGAATTAGGTATGATRGAACTCGATAACCACAAAACAACACTGTTTAGAAAAATTATTTTGTTGGCGAACAAAGTTCCAGACCAAACGGGCTGAAAGAACCACCAGGGCCCGACCTGGCTGGATTGGGAGCTTACTGGTACGTAACTTTGTTGGCAAACGCTGTATCTTGTGGTACTCGTCAAGTTCTATCATATACATTTTAGTTGGTCAATTATTGCTCCTGGGAGAAGTTATCACAGCGCCCTCTAGGCCCGTTTTTGACACGTTTTCAAGTATGCTCCGAAAGTGTATGAGAAATTGTTTATGGTACACCCCACACCTCCAAATATATGGTCAACGTGTTGCAAAAATGAAATAATGATCAGATTTTGGCGTTTTTGGATATATTTTGAACATTTTTGTATTGGTACTATACTTGAATTCCTCTATTTTCCTAAAACAAAAAACTTTAGCAACCACTAAGCACTTCATCAGAAAAGACTAGAATTCGCACTACAAAAACCCCCTCAAAAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTTCTTTTCCCTGCTACTAAG</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTTACGTACCAGTAAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AACTTCTTTTCCCTGCTACTAAGCTTATAAATAGACCTGCATGCATCCACCAGTTAACGGTATCGGTGATTTTTCTTTTAGTATCAATATTTTTTGACAAACTGAATTAGGTATGATAGAACTCGATAACCACAAAACAACACTGTTTAGAAAAATTATTTTGTTGGCGAACAAAGTTCCAGACCAAACGGGCTGAAAGAACCACCAGGGCCCGACCTGGCTGGATTGGGAGCTTACTGGTACGTAACTTTG</canonical_amplicon>
		<polymorphic_amplicon>AACTTCTTTTCCCTGCTACTAAGCTTATAAATAGACCTGCATGCATCCACCAGTTAACGGTATCGGTGATTTTTCTTTTAGTATCAATATTTTTTGACAAACTGAATTAGGTATGATRGAACTCGATAACCACAAAACAACACTGTTTAGAAAAATTATTTTGTTGGCGAACAAAGTTCCAGACCAAACGGGCTGAAAGAACCACCAGGGCCCGACCTGGCTGGATTGGGAGCTTACTGGTACGTAACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33950</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>171598</contig_pos>
        <strand>+</strand>
        <context>ATTACGCTAC[A/T]CTGCCGCACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATAGCACTGGTTAGACAAAAAGCAAGGCCTCGCATGCCATTACGCTAC</left_flank>
        <right_flank>CTGCCGCACACTTCCCCTCTTTTCTGTCTCTTCCTTTAGTACACTAATGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTTTTCAATATGCTGCCAATCAATGAAAGATTCTTGCTCCATTCCAATTCTTAACTCTGTGGATACCCCCATTATTGTTTTTTTTTTTGCTGAACTTTTTCTCCGATCGAATTCGCGTTAGTCTTTCCACTTTCTCTGATATTTCTCTGCTTTCATTTGTGTCCAGCTGCATTATGACTGCTAATTTGATTATTTTGAAAAATTACCAACCTCGATGATCGATTCCTTGTGTTGATTTCGAAGACTATTGTGATTTCAATTATGGAACATAAGAAAAAATTGCGGAAACAAATAAATATATAAATTCCACGGACCGTTTTGGTACCAAAATGACAAGAAAATTACCGCAGGATTTGAAAACCTACTATAATTCAACAATTCTCTATAATGTTTTCAGTTTTCCACAAAAACTATTTTTCTCTCATGAAAAATATCGCAAAACAGAAGAAATAGCACTGGTTAGACAAAAAGCAAGGCCTCGCATGCCATTACGCTACACTGCCGCACACTTCCCCTCTTTTCTGTCTCTTCCTTTAGTACACTAATGAGATGACCCTAGTGGACGGTTTTCCTCCTCTTCTCGGCACACTGGACCCCTTCAGCCATTGCCCCACACAACGGTTTATCGATTTTTGATTCTCTCTCTAGCATTTATGTCTCGTTTCGGTGAATTGCATCTAAACTTGTTTGTATCGAGGTGTTATAAAACGCCACAGGTAACACACATGAACATTTACCGTTGCTATTTTGCGGAAACACAACTGGTCTGTGACTACTAAACACTCTTTCAGCGGTTAACATACAAAATGTTGCGAGCACCGGCAGCAGAGTCGAATAAGGATGTGATTCTGGAAGTTTTGCGGAGATTTGCTACATCTGGCAAGAAAGTGAGTTGTTTTTTTAAATGAAAATTTACCGTAAAAACTCTAATTTAATACCATGGCGTTCTATTTTTCAATGCACAGCTGGGAGAACGTTCTATGAGAGTGTGGCATTCA</canonical>
            <polymorphic>CTGTTTTCAATATGCTGCCAATCAATGAAAGATTCTTGCTCCATTCCAATTCTTAACTCTGTGGATACCCCCATTATTGTTTTTTTTTTTGCTGAACTTTTTCTCCGATCGAATTCGCGTTAGTCTTTCCACTTTCTCTGATATTTCTCTGCTTTCATTTGTGTCCAGCTGCATTATGACTGCTAATTTGATTATTTTGAAAAATTACCAACCTCGATGATCGATTCCTTGTGTTGATTTCGAAGACTATTGTGATTTCAATTATGGAACATAAGAAAAAATTGCGGAAACAAATAAATATATAAATTCCACGGACCGTTTTGGTACCAAAATGACAAGAAAATTACCGCAGGATTTGAAAACCTACTATAATTCAACAATTCTCTATAATGTTTTCAGTTTTCCACAAAAACTATTTTTCTCTCATGAAAAATATCGCAAAACAGAAGAAATAGCACTGGTTAGACAAAAAGCAAGGCCTCGCATGCCATTACGCTACWCTGCCGCACACTTCCCCTCTTTTCTGTCTCTTCCTTTAGTACACTAATGAGATGACCCTAGTGGACGGTTTTCCTCCTCTTCTCGGCACACTGGACCCCTTCAGCCATTGCCCCACACAACGGTTTATCGATTTTTGATTCTCTCTCTAGCATTTATGTCTCGTTTCGGTGAATTGCATCTAAACTTGTTTGTATCGAGGTGTTATAAAACGCCACAGGTAACACACATGAACATTTACCGTTGCTATTTTGCGGAAACACAACTGGTCTGTGACTACTAAACACTCTTTCAGCGGTTAACATACAAAATGTTGCGAGCACCGGCAGCAGAGTCGAATAAGGATGTGATTCTGGAAGTTTTGCGGAGATTTGCTACATCTGGCAAGAAAGTGAGTTGTTTTTTTAAATGAAAATTTACCGTAAAAACTCTAATTTAATACCATGGCGTTCTATTTTTCAATGCACAGCTGGGAGAACGTTCTATGAGAGTGTGGCATTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>95 72 70 68 63 57 54 51 45 43 36 34 33 32 31 27 27 25 25 21 20 13 13 11 9 8 7 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>95 72 70 68 63 57 54 51 51 45 36 34 33 32 31 27 27 25 25 21 20 13 13 11 9 7 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAGAAGAAATAGCACTGGTTA</pcr_primer_p1>
		<pcr_primer_p2>AAACAAGTTTAGATGCAATTCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACAGAAGAAATAGCACTGGTTAGACAAAAAGCAAGGCCTCGCATGCCATTACGCTACACTGCCGCACACTTCCCCTCTTTTCTGTCTCTTCCTTTAGTACACTAATGAGATGACCCTAGTGGACGGTTTTCCTCCTCTTCTCGGCACACTGGACCCCTTCAGCCATTGCCCCACACAACGGTTTATCGATTTTTGATTCTCTCTCTAGCATTTATGTCTCGTTTCGGTGAATTGCATCTAAACTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>AACAGAAGAAATAGCACTGGTTAGACAAAAAGCAAGGCCTCGCATGCCATTACGCTACWCTGCCGCACACTTCCCCTCTTTTCTGTCTCTTCCTTTAGTACACTAATGAGATGACCCTAGTGGACGGTTTTCCTCCTCTTCTCGGCACACTGGACCCCTTCAGCCATTGCCCCACACAACGGTTTATCGATTTTTGATTCTCTCTCTAGCATTTATGTCTCGTTTCGGTGAATTGCATCTAAACTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33951</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>208498</contig_pos>
        <strand>+</strand>
        <context>TGCATATTTG[C/T]AWCCGGGCCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTG</left_flank>
        <right_flank>AGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCGTTTTATCAACACAGCTTATCGGTGGGGATGGTGGTGATAAGTTTCTCACCCTAGCTTCAGGTGCGTTTCACGAAATTCGAATAGGAGGGCTTTAATTTTTAGCAAATTTCCAAAAACTTTCTATCTTCTGAAAAAAAGATTTTGTTCGGTAACAAGTTCATGGAACTTCTAGTTTCTACAAAGAACCTCCATACAATAGTTATACATTATAAATTGTCTTTTTTGTTCTGTCTGCATCTCTAATCCTCCAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTATGCGTGCTGTCGTCGTTCGCCCTTCCTGTGTCTGTCAATACGAATTCAATTGACTTCTTTGACAACGCTTCATTTAGTCCTGACATACTACGATTTCGACGTTTTTTGTTCGCACCTTTCTAGTTGTCTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCCGCTCGATACAAAAACATAATTTAGTCGATTTCTGCTATTTTGATCATTTTCAAGTTTCTGGAACTTGGCTGTCAAGTTTCCGATCATTTTAAAAATTGTCAAGAGTGTAAAACAGATCTTTTTCAGAATTTTCTGAGAATTGCTAGTTTTTCAGCTATACGCCGAATCCCAAAGGACACCTCTTTTTGGACTGTTATTGTACTGAAAATATTCAAAAAAAAAGTGTCTTTCAGAAATCGACAAATTGGTTAAAAAACAACGAATTTCACAAAAACTCTGTGAGTGCGAAGTTTCCAATCTAGGTCT</canonical>
            <polymorphic>AGCGTTTTATCAACACAGCTTATCGGTGGGGATGGTGGTGATAAGTTTCTCACCCTAGCTTCAGGTGCGTTTCACGAAATTCGAATAGGAGGGCTTTAATTTTTAGCAAATTTCCAAAAACTTTCTATCTTCTGAAAAAAAGATTTTGTTCGGTAACAAGTTCATGGAACTTCTAGTTTCTACAAAGAACCTCCATACAATAGTTATACATTATAAATTGTCTTTTTTGTTCTGTCTGCATCTCTAATCCTCCAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTATGCGTGCTGTCGTCGTTCGCCCTTCCTGTGTCTGTCAATACGAATTCAATTGACTTCTTTGACAACGCTTCATTTAGTCCTGACATACTACGATTTCGACGTTTTTTGTTCGCACCTTTCTAGTTGTCTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGYAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCCGCTCGATACAAAAACATAATTTAGTCGATTTCTGCTATTTTGATCATTTTCAAGTTTCTGGAACTTGGCTGTCAAGTTTCCGATCATTTTAAAAATTGTCAAGAGTGTAAAACAGATCTTTTTCAGAATTTTCTGAGAATTGCTAGTTTTTCAGCTATACGCCGAATCCCAAAGGACACCTCTTTTTGGACTGTTATTGTACTGAAAATATTCAAAAAAAAAGTGTCTTTCAGAAATCGACAAATTGGTTAAAAAACAACGAATTTCACAAAAACTCTGTGAGTGCGAAGTTTCCAATCTAGGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>502 305 193</canonical_bands>
                <polymorphic_bands>695 305</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>342 238 176 159 77 8</canonical_bands>
                <polymorphic_bands>342 238 176 167 77</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGTTGTCTGGGACCTATCATT</pcr_primer_p1>
		<pcr_primer_p2>GGCACTGTATATCTGAAAAATCA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TAGTTGTCTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCC</canonical_amplicon>
		<polymorphic_amplicon>TAGTTGTCTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGYAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33952</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>208500</contig_pos>
        <strand>+</strand>
        <context>CATATTTGYA[A/T]CCGGGCCGGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCA</left_flank>
        <right_flank>CCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTTTATCAACACAGCTTATCGGTGGGGATGGTGGTGATAAGTTTCTCACCCTAGCTTCAGGTGCGTTTCACGAAATTCGAATAGGAGGGCTTTAATTTTTAGCAAATTTCCAAAAACTTTCTATCTTCTGAAAAAAAGATTTTGTTCGGTAACAAGTTCATGGAACTTCTAGTTTCTACAAAGAACCTCCATACAATAGTTATACATTATAAATTGTCTTTTTTGTTCTGTCTGCATCTCTAATCCTCCAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTATGCGTGCTGTCGTCGTTCGCCCTTCCTGTGTCTGTCAATACGAATTCAATTGACTTCTTTGACAACGCTTCATTTAGTCCTGACATACTACGATTTCGACGTTTTTTGTTCGCACCTTTCTAGTTGTCTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCCGCTCGATACAAAAACATAATTTAGTCGATTTCTGCTATTTTGATCATTTTCAAGTTTCTGGAACTTGGCTGTCAAGTTTCCGATCATTTTAAAAATTGTCAAGAGTGTAAAACAGATCTTTTTCAGAATTTTCTGAGAATTGCTAGTTTTTCAGCTATACGCCGAATCCCAAAGGACACCTCTTTTTGGACTGTTATTGTACTGAAAATATTCAAAAAAAAAGTGTCTTTCAGAAATCGACAAATTGGTTAAAAAACAACGAATTTCACAAAAACTCTGTGAGTGCGAAGTTTCCAATCTAGGTCTGT</canonical>
            <polymorphic>CGTTTTATCAACACAGCTTATCGGTGGGGATGGTGGTGATAAGTTTCTCACCCTAGCTTCAGGTGCGTTTCACGAAATTCGAATAGGAGGGCTTTAATTTTTAGCAAATTTCCAAAAACTTTCTATCTTCTGAAAAAAAGATTTTGTTCGGTAACAAGTTCATGGAACTTCTAGTTTCTACAAAGAACCTCCATACAATAGTTATACATTATAAATTGTCTTTTTTGTTCTGTCTGCATCTCTAATCCTCCAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTATGCGTGCTGTCGTCGTTCGCCCTTCCTGTGTCTGTCAATACGAATTCAATTGACTTCTTTGACAACGCTTCATTTAGTCCTGACATACTACGATTTCGACGTTTTTTGTTCGCACCTTTCTAGTTGTCTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAWCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCCGCTCGATACAAAAACATAATTTAGTCGATTTCTGCTATTTTGATCATTTTCAAGTTTCTGGAACTTGGCTGTCAAGTTTCCGATCATTTTAAAAATTGTCAAGAGTGTAAAACAGATCTTTTTCAGAATTTTCTGAGAATTGCTAGTTTTTCAGCTATACGCCGAATCCCAAAGGACACCTCTTTTTGGACTGTTATTGTACTGAAAATATTCAAAAAAAAAGTGTCTTTCAGAAATCGACAAATTGGTTAAAAAACAACGAATTTCACAAAAACTCTGTGAGTGCGAAGTTTCCAATCTAGGTCTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCCNNNNNGGC</site>
                <isoschizomers>
                    <enzyme>BglI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>494 444 62</canonical_bands>
                <polymorphic_bands>938 62</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 307 193</canonical_bands>
                <polymorphic_bands>693 307</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>251 212 197 154 86 40 35 16 5 4</canonical_bands>
                <polymorphic_bands>251 212 202 154 86 40 35 16 4</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGGGACCTATCATTTTCTAGTC</pcr_primer_p1>
		<pcr_primer_p2>GGCACTGTATATCTGAAAAATCA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCC</canonical_amplicon>
		<polymorphic_amplicon>CTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAWCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33953</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>208547</contig_pos>
        <strand>+</strand>
        <context>AAATTTTTTT[A/T]RTWTTAAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTT</left_flank>
        <right_flank>CTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACCCTAGCTTCAGGTGCGTTTCACGAAATTCGAATAGGAGGGCTTTAATTTTTAGCAAATTTCCAAAAACTTTCTATCTTCTGAAAAAAAGATTTTGTTCGGTAACAAGTTCATGGAACTTCTAGTTTCTACAAAGAACCTCCATACAATAGTTATACATTATAAATTGTCTTTTTTGTTCTGTCTGCATCTCTAATCCTCCAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTATGCGTGCTGTCGTCGTTCGCCCTTCCTGTGTCTGTCAATACGAATTCAATTGACTTCTTTGACAACGCTTCATTTAGTCCTGACATACTACGATTTCGACGTTTTTTGTTCGCACCTTTCTAGTTGTCTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCCGCTCGATACAAAAACATAATTTAGTCGATTTCTGCTATTTTGATCATTTTCAAGTTTCTGGAACTTGGCTGTCAAGTTTCCGATCATTTTAAAAATTGTCAAGAGTGTAAAACAGATCTTTTTCAGAATTTTCTGAGAATTGCTAGTTTTTCAGCTATACGCCGAATCCCAAAGGACACCTCTTTTTGGACTGTTATTGTACTGAAAATATTCAAAAAAAAAGTGTCTTTCAGAAATCGACAAATTGGTTAAAAAACAACGAATTTCACAAAAACTCTGTGAGTGCGAAGTTTCCAATCTAGGTCTGTTTAATAAAATCCGAACTTCTCAAAAATTTTGGGTACTAGACAGCCGA</canonical>
            <polymorphic>TCACCCTAGCTTCAGGTGCGTTTCACGAAATTCGAATAGGAGGGCTTTAATTTTTAGCAAATTTCCAAAAACTTTCTATCTTCTGAAAAAAAGATTTTGTTCGGTAACAAGTTCATGGAACTTCTAGTTTCTACAAAGAACCTCCATACAATAGTTATACATTATAAATTGTCTTTTTTGTTCTGTCTGCATCTCTAATCCTCCAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTATGCGTGCTGTCGTCGTTCGCCCTTCCTGTGTCTGTCAATACGAATTCAATTGACTTCTTTGACAACGCTTCATTTAGTCCTGACATACTACGATTTCGACGTTTTTTGTTCGCACCTTTCTAGTTGTCTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTWCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCCGCTCGATACAAAAACATAATTTAGTCGATTTCTGCTATTTTGATCATTTTCAAGTTTCTGGAACTTGGCTGTCAAGTTTCCGATCATTTTAAAAATTGTCAAGAGTGTAAAACAGATCTTTTTCAGAATTTTCTGAGAATTGCTAGTTTTTCAGCTATACGCCGAATCCCAAAGGACACCTCTTTTTGGACTGTTATTGTACTGAAAATATTCAAAAAAAAAGTGTCTTTCAGAAATCGACAAATTGGTTAAAAAACAACGAATTTCACAAAAACTCTGTGAGTGCGAAGTTTCCAATCTAGGTCTGTTTAATAAAATCCGAACTTCTCAAAAATTTTGGGTACTAGACAGCCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGGGACCTATCATTTTCTAGTC</pcr_primer_p1>
		<pcr_primer_p2>GGCACTGTATATCTGAAAAATCA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCC</canonical_amplicon>
		<polymorphic_amplicon>CTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTWCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33954</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>208548</contig_pos>
        <strand>+</strand>
        <context>AATTTTTTTW[A/G]TWTTAAAACG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTT</left_flank>
        <right_flank>TTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACCCTAGCTTCAGGTGCGTTTCACGAAATTCGAATAGGAGGGCTTTAATTTTTAGCAAATTTCCAAAAACTTTCTATCTTCTGAAAAAAAGATTTTGTTCGGTAACAAGTTCATGGAACTTCTAGTTTCTACAAAGAACCTCCATACAATAGTTATACATTATAAATTGTCTTTTTTGTTCTGTCTGCATCTCTAATCCTCCAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTATGCGTGCTGTCGTCGTTCGCCCTTCCTGTGTCTGTCAATACGAATTCAATTGACTTCTTTGACAACGCTTCATTTAGTCCTGACATACTACGATTTCGACGTTTTTTGTTCGCACCTTTCTAGTTGTCTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCCGCTCGATACAAAAACATAATTTAGTCGATTTCTGCTATTTTGATCATTTTCAAGTTTCTGGAACTTGGCTGTCAAGTTTCCGATCATTTTAAAAATTGTCAAGAGTGTAAAACAGATCTTTTTCAGAATTTTCTGAGAATTGCTAGTTTTTCAGCTATACGCCGAATCCCAAAGGACACCTCTTTTTGGACTGTTATTGTACTGAAAATATTCAAAAAAAAAGTGTCTTTCAGAAATCGACAAATTGGTTAAAAAACAACGAATTTCACAAAAACTCTGTGAGTGCGAAGTTTCCAATCTAGGTCTGTTTAATAAAATCCGAACTTCTCAAAAATTTTGGGTACTAGACAGCCGAC</canonical>
            <polymorphic>CACCCTAGCTTCAGGTGCGTTTCACGAAATTCGAATAGGAGGGCTTTAATTTTTAGCAAATTTCCAAAAACTTTCTATCTTCTGAAAAAAAGATTTTGTTCGGTAACAAGTTCATGGAACTTCTAGTTTCTACAAAGAACCTCCATACAATAGTTATACATTATAAATTGTCTTTTTTGTTCTGTCTGCATCTCTAATCCTCCAATTCCTCGATTCAACTGTTACTTTTTTCCCACACAAGTATATCTACAGTAGCCTAATTGTGCATTTATGCGTGCTGTCGTCGTTCGCCCTTCCTGTGTCTGTCAATACGAATTCAATTGACTTCTTTGACAACGCTTCATTTAGTCCTGACATACTACGATTTCGACGTTTTTTGTTCGCACCTTTCTAGTTGTCTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTRTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCCGCTCGATACAAAAACATAATTTAGTCGATTTCTGCTATTTTGATCATTTTCAAGTTTCTGGAACTTGGCTGTCAAGTTTCCGATCATTTTAAAAATTGTCAAGAGTGTAAAACAGATCTTTTTCAGAATTTTCTGAGAATTGCTAGTTTTTCAGCTATACGCCGAATCCCAAAGGACACCTCTTTTTGGACTGTTATTGTACTGAAAATATTCAAAAAAAAAGTGTCTTTCAGAAATCGACAAATTGGTTAAAAAACAACGAATTTCACAAAAACTCTGTGAGTGCGAAGTTTCCAATCTAGGTCTGTTTAATAAAATCCGAACTTCTCAAAAATTTTGGGTACTAGACAGCCGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGGGACCTATCATTTTCTAGTC</pcr_primer_p1>
		<pcr_primer_p2>GGCACTGTATATCTGAAAAATCA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTCTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCC</canonical_amplicon>
		<polymorphic_amplicon>CTGGGACCTATCATTTTCTAGTCGAACCGTCTGTTTTTTTTTGCATATTTGCAGCCGGGCCGGCCTTTCTACAGTATTTTTCTTTCAAAAAAATTTTTTTTRTTTTAAAACGAAAGTCCTACAAAAAATAATTTGCGAAGATCAAAGTCTCCATAAAAACTATCATTTTTCAGAAAAAATGCTCAAATTTACAAAAAAAAATTTTAAATGCAAAACCGGGTCCTGATTTTTCAGATATACAGTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33955</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>230900</contig_pos>
        <strand>+</strand>
        <context>TGTGATTCCA[A/C]TTGAACATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAATTCACCCTCTGAGATGAATTATTCTAGGAAGCTTCTTTGTGATTCCA</left_flank>
        <right_flank>TTGAACATTGCTCGTTCCATTTTTCATTTTATTCATTTTTCCGTTTTTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGATATTCAGAGTCAGAGAGCAAATATTAATTTGGAACTTTTAGACTGGAGACACCAGCTCGCTGGAATCGTCAAACGTGTAAATCCTCCAAAAAATCTCATCTAGGAACCAATCTTCGTGTCCTGAACCCCGTTGCATCATGACAAAAACCAACAACACCATAAAAATCCAAATTTGTATCCAAATTTCCTTCTCCCGTCTAAAAATGTCCCATGCTGTCTGTATTTAGTACCTGAAACTATCTTCGCCGATTGCGAGTCCTTTGCATTTCCAAAACAAAAATTTGTCTTCCCCCCAAAACTCTCTTATTTCATCGTTCTTTCCTATCTGAATTCCAATTATTTTTATCTATTGCCATTTAACACTCACCTCCTAATTTTTTAAGAGGCGAATTGTAGATCAAATCTCACTACAACTCCTCTTCACCCTATTTTTTCCCGAGTTTCCGAATTCACCCTCTGAGATGAATTATTCTAGGAAGCTTCTTTGTGATTCCAATTGAACATTGCTCGTTCCATTTTTCATTTTATTCATTTTTCCGTTTTTATTGCTGTCATTCAAAAAAGTTTCTCCCTTGTGCTCTTCAATTCTCATCAATTCATTCTTTTTTTAATTTGAAATAAAACAAATTGCCTGAACAAGTCTTTTTTTTAATTTTCGAAAACTTTATTTGAAATTTCAAAATTTTGGACTTTGGGAATATTGAGATTTTTGAATTTTAAGAATCTTGGAATATTCCAATTTTTAAGATTTCGGAATTCCGGAATATCACGATTTTCAAAGTTTCGAAACTTCAGAATATCCAACTTGCACATTTCCGAAATTTCGCAATTTTCCAGTTCTCAAAATATTCGAATTTCGTTACTCGCAAGGAAATTTTAAGTGTGTCCTTTTTAGTCCGAAATGTTTCAATTACAATAATAGGGTATTTTTGAAATTCCGAACTCCAAATTCCTGTTATCACATTAAAAAATCAAAAATAATTTTGAAAATCGTTC</canonical>
            <polymorphic>TCGATATTCAGAGTCAGAGAGCAAATATTAATTTGGAACTTTTAGACTGGAGACACCAGCTCGCTGGAATCGTCAAACGTGTAAATCCTCCAAAAAATCTCATCTAGGAACCAATCTTCGTGTCCTGAACCCCGTTGCATCATGACAAAAACCAACAACACCATAAAAATCCAAATTTGTATCCAAATTTCCTTCTCCCGTCTAAAAATGTCCCATGCTGTCTGTATTTAGTACCTGAAACTATCTTCGCCGATTGCGAGTCCTTTGCATTTCCAAAACAAAAATTTGTCTTCCCCCCAAAACTCTCTTATTTCATCGTTCTTTCCTATCTGAATTCCAATTATTTTTATCTATTGCCATTTAACACTCACCTCCTAATTTTTTAAGAGGCGAATTGTAGATCAAATCTCACTACAACTCCTCTTCACCCTATTTTTTCCCGAGTTTCCGAATTCACCCTCTGAGATGAATTATTCTAGGAAGCTTCTTTGTGATTCCAMTTGAACATTGCTCGTTCCATTTTTCATTTTATTCATTTTTCCGTTTTTATTGCTGTCATTCAAAAAAGTTTCTCCCTTGTGCTCTTCAATTCTCATCAATTCATTCTTTTTTTAATTTGAAATAAAACAAATTGCCTGAACAAGTCTTTTTTTTAATTTTCGAAAACTTTATTTGAAATTTCAAAATTTTGGACTTTGGGAATATTGAGATTTTTGAATTTTAAGAATCTTGGAATATTCCAATTTTTAAGATTTCGGAATTCCGGAATATCACGATTTTCAAAGTTTCGAAACTTCAGAATATCCAACTTGCACATTTCCGAAATTTCGCAATTTTCCAGTTCTCAAAATATTCGAATTTCGTTACTCGCAAGGAAATTTTAAGTGTGTCCTTTTTAGTCCGAAATGTTTCAATTACAATAATAGGGTATTTTTGAAATTCCGAACTCCAAATTCCTGTTATCACATTAAAAAATCAAAAATAATTTTGAAAATCGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>144 97 89 65 58 50 38 36 32 32 30 29 25 25 25 25 22 20 18 17 17 16 16 16 14 12 10 8 8 6</canonical_bands>
                <polymorphic_bands>144 119 97 65 58 50 38 36 32 32 29 25 25 25 25 22 20 18 17 17 16 16 16 14 12 10 8 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATTTAACACTCACCTCCTAA</pcr_primer_p1>
		<pcr_primer_p2>GAATGAATTGATGAGAATTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCATTTAACACTCACCTCCTAATTTTTTAAGAGGCGAATTGTAGATCAAATCTCACTACAACTCCTCTTCACCCTATTTTTTCCCGAGTTTCCGAATTCACCCTCTGAGATGAATTATTCTAGGAAGCTTCTTTGTGATTCCAATTGAACATTGCTCGTTCCATTTTTCATTTTATTCATTTTTCCGTTTTTATTGCTGTCATTCAAAAAAGTTTCTCCCTTGTGCTCTTCAATTCTCATCAATTCATTC</canonical_amplicon>
		<polymorphic_amplicon>CCATTTAACACTCACCTCCTAATTTTTTAAGAGGCGAATTGTAGATCAAATCTCACTACAACTCCTCTTCACCCTATTTTTTCCCGAGTTTCCGAATTCACCCTCTGAGATGAATTATTCTAGGAAGCTTCTTTGTGATTCCAMTTGAACATTGCTCGTTCCATTTTTCATTTTATTCATTTTTCCGTTTTTATTGCTGTCATTCAAAAAAGTTTCTCCCTTGTGCTCTTCAATTCTCATCAATTCATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33956</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>233765</contig_pos>
        <strand>+</strand>
        <context>CACCAACTAA[A/G]ATCAGCAGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCGAGGACATTGTTGAGCAACAAATGATGCCAGTACCACCACCAACTAA</left_flank>
        <right_flank>ATCAGCAGCTCTCTCAGAAATCATATTCGCTATTCGCCAACACCTGTCGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAAAAGAATTGAAGTACAGAAGAAAATGGAAGAGGAGTTGAGAAAGAAGGTTTTTTGGGAAATCTAACGGATTTTTTTTCAAATGGTATTGTTTCAGGAAAAAGAGCTAGAAGAAGCAAAACAAAAAATGGAGCAGCAACTTAGAGAGCAGTTGAGCAGCTGGCACAGTTCGTTCGGACCAAGTCAACCAGTGAGAGGGAAAACTGTATAAAATAATTTTGAATTGTGATAATTTCAGAGAGCTCCAGTGCCACTCTCAGCCGAATTGCAACTCGAAAACTTGGTAATAACTATCAAAAAGTTCATAAATCTGCATTAAAAAATTTTTAAGGGTTCCCCACCAGCTCCACCAGCCTCGATTGCTCAGTCTCCACCAGAAGTTTTGGAGACTACAGCCGAGCCACCAGCGTTCCAAGTGGCTTCCCACGAACGCAAGCTTGCTGAGGAGCGCGAGGACATTGTTGAGCAACAAATGATGCCAGTACCACCACCAACTAAAATCAGCAGCTCTCTCAGAAATCATATTCGCTATTCGCCAACACCTGTCGTCACTGAAGCCACTCCAGTGATTCCACCAAGCACTTCAGTTGATAGAGAAGAGTGAGTGGAATACGGTCAATGTATTTTTCAGTGGATGTTTTGTCTTGAGCTCTTTGAGTCTGGAGCTCTTTAAAATTTTCGATGGGTGTAAAACAGACCTAGATTGAAAACCTTGCATTCACAGAATTTTTTGAAGATTCATTCCATTTTCGATTGCTGAAAGACACCCATTTCTGGTTTTTTCCGTTCTAGGTCTGTTTTACGTCATCCAAAATTATCAAAGGGAACGGGACCTTGATAGTCTTGCTTCTGACTCTTGAAAATGGTTAAAATGACTAAAAATCTGCTGAAAAATACTTACATATATATATTTTTTTGATAGAATGTCAAATAGATTCAAACTTTCAGTGATGAATTCGTATCAAAATGCAATTGTGAGAAAATCTCTCTAGACAAAAT</canonical>
            <polymorphic>GCAAAAGAATTGAAGTACAGAAGAAAATGGAAGAGGAGTTGAGAAAGAAGGTTTTTTGGGAAATCTAACGGATTTTTTTTCAAATGGTATTGTTTCAGGAAAAAGAGCTAGAAGAAGCAAAACAAAAAATGGAGCAGCAACTTAGAGAGCAGTTGAGCAGCTGGCACAGTTCGTTCGGACCAAGTCAACCAGTGAGAGGGAAAACTGTATAAAATAATTTTGAATTGTGATAATTTCAGAGAGCTCCAGTGCCACTCTCAGCCGAATTGCAACTCGAAAACTTGGTAATAACTATCAAAAAGTTCATAAATCTGCATTAAAAAATTTTTAAGGGTTCCCCACCAGCTCCACCAGCCTCGATTGCTCAGTCTCCACCAGAAGTTTTGGAGACTACAGCCGAGCCACCAGCGTTCCAAGTGGCTTCCCACGAACGCAAGCTTGCTGAGGAGCGCGAGGACATTGTTGAGCAACAAATGATGCCAGTACCACCACCAACTAARATCAGCAGCTCTCTCAGAAATCATATTCGCTATTCGCCAACACCTGTCGTCACTGAAGCCACTCCAGTGATTCCACCAAGCACTTCAGTTGATAGAGAAGAGTGAGTGGAATACGGTCAATGTATTTTTCAGTGGATGTTTTGTCTTGAGCTCTTTGAGTCTGGAGCTCTTTAAAATTTTCGATGGGTGTAAAACAGACCTAGATTGAAAACCTTGCATTCACAGAATTTTTTGAAGATTCATTCCATTTTCGATTGCTGAAAGACACCCATTTCTGGTTTTTTCCGTTCTAGGTCTGTTTTACGTCATCCAAAATTATCAAAGGGAACGGGACCTTGATAGTCTTGCTTCTGACTCTTGAAAATGGTTAAAATGACTAAAAATCTGCTGAAAAATACTTACATATATATATTTTTTTGATAGAATGTCAAATAGATTCAAACTTTCAGTGATGAATTCGTATCAAAATGCAATTGTGAGAAAATCTCTCTAGACAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCAGAAGTTTTGGAGACTAC</pcr_primer_p1>
		<pcr_primer_p2>CGTATTCCACTCACTCTTCTCTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CACCAGAAGTTTTGGAGACTACAGCCGAGCCACCAGCGTTCCAAGTGGCTTCCCACGAACGCAAGCTTGCTGAGGAGCGCGAGGACATTGTTGAGCAACAAATGATGCCAGTACCACCACCAACTAAAATCAGCAGCTCTCTCAGAAATCATATTCGCTATTCGCCAACACCTGTCGTCACTGAAGCCACTCCAGTGATTCCACCAAGCACTTCAGTTGATAGAGAAGAGTGAGTGGAATACG</canonical_amplicon>
		<polymorphic_amplicon>CACCAGAAGTTTTGGAGACTACAGCCGAGCCACCAGCGTTCCAAGTGGCTTCCCACGAACGCAAGCTTGCTGAGGAGCGCGAGGACATTGTTGAGCAACAAATGATGCCAGTACCACCACCAACTAARATCAGCAGCTCTCTCAGAAATCATATTCGCTATTCGCCAACACCTGTCGTCACTGAAGCCACTCCAGTGATTCCACCAAGCACTTCAGTTGATAGAGAAGAGTGAGTGGAATACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33957</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>339223</contig_pos>
        <strand>+</strand>
        <context>GGACACTTTG[C/T]CCCCTGTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTTTCTGGAACACGCTCTTTTAACACCCACACAATGATTGGACACTTTG</left_flank>
        <right_flank>CCCCTGTTCTCACTTGATCTTCCCCTTCAAAAGTGAACACTTTAGTCAAC</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATTTCAAAATACTGGAATTTTGGAATGGTTCAATTTTCTAAACTTTTTAATTTCAGAAAATTCCTATTACACAATGCTCCTAGACAAATGCACAATTCGTTGTTTTGTTTGTTTTCGTCAAAAAAGAACAAAGTTGATCCAATTCAAAATTTCGATATTTCGGAATATTCCGATTTTGAAAGTTTCGGGATCCCGGAGTATATTGATTCTTGAAACATTCGAATTTTCGGAAAATTCCAATTTGGAATTCCGTTCCTAACATTCCCGAATTGGAGAAACCTTTCAACTTGGAAATTATTATACTTTATTTACATCATTAGCAATGCTCGGATATATCAAAAATCTCAAAATAATCTCCTCTCAACAAATATCTTTCAAAAATTTTTTCAAAAACAATTTTTGGAAAACAATCTAAAAACTGCAAAATGCAGCGCCAACTATGATCTATGTTTCTGGAACACGCTCTTTTAACACCCACACAATGATTGGACACTTTGCCCCCTGTTCTCACTTGATCTTCCCCTTCAAAAGTGAACACTTTAGTCAACTACCTGTTTCACTCTATGCGCTTAGAGTCCACCACCACCACACTGCTCCTAGACAAATGCACAATTCGTTGTTTTGTTTGTTTTCGTCCAAAAAGAAACAAGTTGATCCAATCTTGTGTGTCGCCCCATCCTTTTTTACCACCACCACTGCTTTGCCATTCGTTTTTCCACACTGACATTGCCATCCCATCTTGCCTTTTTTCTATTTTCCTTTTTTTTTTGAAGCGGGTGTTGTCCCGTTTTTGGGCAAGAAGGAGAGAAAGGAAAAAAAAAGAAGACGACTCTTCCTCCCAAAAAATTTTGGGGCTGATGGTGACATCATCAAACAGGAGGAGCAGAGAGTCCAATGCATATATGCACCGTTGTTGTTTTTTCCTGCTTTTTTTGCTCCAAATGTTTTTTTCCAGTCTTGGATTTCCTACATCGTCATAAAATCTCCTTTTTCTTCGT</canonical>
            <polymorphic>GGATTTCAAAATACTGGAATTTTGGAATGGTTCAATTTTCTAAACTTTTTAATTTCAGAAAATTCCTATTACACAATGCTCCTAGACAAATGCACAATTCGTTGTTTTGTTTGTTTTCGTCAAAAAAGAACAAAGTTGATCCAATTCAAAATTTCGATATTTCGGAATATTCCGATTTTGAAAGTTTCGGGATCCCGGAGTATATTGATTCTTGAAACATTCGAATTTTCGGAAAATTCCAATTTGGAATTCCGTTCCTAACATTCCCGAATTGGAGAAACCTTTCAACTTGGAAATTATTATACTTTATTTACATCATTAGCAATGCTCGGATATATCAAAAATCTCAAAATAATCTCCTCTCAACAAATATCTTTCAAAAATTTTTTCAAAAACAATTTTTGGAAAACAATCTAAAAACTGCAAAATGCAGCGCCAACTATGATCTATGTTTCTGGAACACGCTCTTTTAACACCCACACAATGATTGGACACTTTGYCCCCTGTTCTCACTTGATCTTCCCCTTCAAAAGTGAACACTTTAGTCAACTACCTGTTTCACTCTATGCGCTTAGAGTCCACCACCACCACACTGCTCCTAGACAAATGCACAATTCGTTGTTTTGTTTGTTTTCGTCCAAAAAGAAACAAGTTGATCCAATCTTGTGTGTCGCCCCATCCTTTTTTACCACCACCACTGCTTTGCCATTCGTTTTTCCACACTGACATTGCCATCCCATCTTGCCTTTTTTCTATTTTCCTTTTTTTTTTGAAGCGGGTGTTGTCCCGTTTTTGGGCAAGAAGGAGAGAAAGGAAAAAAAAAGAAGACGACTCTTCCTCCCAAAAAATTTTGGGGCTGATGGTGACATCATCAAACAGGAGGAGCAGAGAGTCCAATGCATATATGCACCGTTGTTGTTTTTTCCTGCTTTTTTTGCTCCAAATGTTTTTTTCCAGTCTTGGATTTCCTACATCGTCATAAAATCTCCTTTTTCTTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGGATATATCAAAAATCTCAA</pcr_primer_p1>
		<pcr_primer_p2>GCATAGAGTGAAACAGGTAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CTCGGATATATCAAAAATCTCAAAATAATCTCCTCTCAACAAATATCTTTCAAAAATTTTTTCAAAAACAATTTTTGGAAAACAATCTAAAAACTGCAAAATGCAGCGCCAACTATGATCTATGTTTCTGGAACACGCTCTTTTAACACCCACACAATGATTGGACACTTTGCCCCCTGTTCTCACTTGATCTTCCCCTTCAAAAGTGAACACTTTAGTCAACTACCTGTTTCACTCTATGC</canonical_amplicon>
		<polymorphic_amplicon>CTCGGATATATCAAAAATCTCAAAATAATCTCCTCTCAACAAATATCTTTCAAAAATTTTTTCAAAAACAATTTTTGGAAAACAATCTAAAAACTGCAAAATGCAGCGCCAACTATGATCTATGTTTCTGGAACACGCTCTTTTAACACCCACACAATGATTGGACACTTTGYCCCCTGTTCTCACTTGATCTTCCCCTTCAAAAGTGAACACTTTAGTCAACTACCTGTTTCACTCTATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33958</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>351433</contig_pos>
        <strand>+</strand>
        <context>ATAAAATAAT[A/C]ATATAAAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCCACGATCCACAGATTGCTACATTTCGTGCGGATCTGAAATAAAATAAT</left_flank>
        <right_flank>ATATAAAATTCTTAAAATCAGAGAAATTTGAAATCAGAGAGAAATAAACT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAATGTAATTAGAAAAACTACCTCTGGATCAATTACAGTACTAGAGCTCGCTGGGGAGGACATGATGAGGGTCGGTACGAAACGGTGTTCTATATGATGTTAAAAAGGAAAATGAAACAACATTTGTCATTAAAAAAAAGCTATGACGTGCCTAGAGACACCACAAACAAGAAGCGAGGAGCCAATACATGGTCATATGCCCTCATTTCTCTATTTTTTATTGAATTTTGTACTGGAAACAACCTCAACTAACCTCATAATCGGCTTCATCAATCATCACGACATTGTTTTCCCCTCCCAAATGATTGCTCGTTTTCTGTTGATTATCATCAACCACCCACTTGTGGTCGACATAGAATTTGTACTCGTGTTTTCCTGGCTCCAAATCAACGATCGTTGAGAAATCGCCCGACGATTTGACAAGAGGAATTCGTTGGTTCCATTTGTCCCACGATCCACAGATTGCTACATTTCGTGCGGATCTGAAATAAAATAATCATATAAAATTCTTAAAATCAGAGAAATTTGAAATCAGAGAGAAATAAACTTACGTGTTGGCTTGGTTCCATTTGAATACCACTGGAAATAATTTGGTCTTGTCGTCGCTTTTGGCGATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTT</canonical>
            <polymorphic>TTCAATGTAATTAGAAAAACTACCTCTGGATCAATTACAGTACTAGAGCTCGCTGGGGAGGACATGATGAGGGTCGGTACGAAACGGTGTTCTATATGATGTTAAAAAGGAAAATGAAACAACATTTGTCATTAAAAAAAAGCTATGACGTGCCTAGAGACACCACAAACAAGAAGCGAGGAGCCAATACATGGTCATATGCCCTCATTTCTCTATTTTTTATTGAATTTTGTACTGGAAACAACCTCAACTAACCTCATAATCGGCTTCATCAATCATCACGACATTGTTTTCCCCTCCCAAATGATTGCTCGTTTTCTGTTGATTATCATCAACCACCCACTTGTGGTCGACATAGAATTTGTACTCGTGTTTTCCTGGCTCCAAATCAACGATCGTTGAGAAATCGCCCGACGATTTGACAAGAGGAATTCGTTGGTTCCATTTGTCCCACGATCCACAGATTGCTACATTTCGTGCGGATCTGAAATAAAATAATMATATAAAATTCTTAAAATCAGAGAAATTTGAAATCAGAGAGAAATAAACTTACGTGTTGGCTTGGTTCCATTTGAATACCACTGGAAATAATTTGGTCTTGTCGTCGCTTTTGGCGATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGTCGACATAGAATTTGTACT</pcr_primer_p1>
		<pcr_primer_p2>AATTATTTCCAGTGGTATTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTGGTCGACATAGAATTTGTACTCGTGTTTTCCTGGCTCCAAATCAACGATCGTTGAGAAATCGCCCGACGATTTGACAAGAGGAATTCGTTGGTTCCATTTGTCCCACGATCCACAGATTGCTACATTTCGTGCGGATCTGAAATAAAATAATCATATAAAATTCTTAAAATCAGAGAAATTTGAAATCAGAGAGAAATAAACTTACGTGTTGGCTTGGTTCCATTTGAATACCACTGGAAATAATT</canonical_amplicon>
		<polymorphic_amplicon>GTGGTCGACATAGAATTTGTACTCGTGTTTTCCTGGCTCCAAATCAACGATCGTTGAGAAATCGCCCGACGATTTGACAAGAGGAATTCGTTGGTTCCATTTGTCCCACGATCCACAGATTGCTACATTTCGTGCGGATCTGAAATAAAATAATMATATAAAATTCTTAAAATCAGAGAAATTTGAAATCAGAGAGAAATAAACTTACGTGTTGGCTTGGTTCCATTTGAATACCACTGGAAATAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33959</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>351599</contig_pos>
        <strand>+</strand>
        <context>ATGATTATTT[A/G]AACAGTATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTT</left_flank>
        <right_flank>AACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACAAGAAGCGAGGAGCCAATACATGGTCATATGCCCTCATTTCTCTATTTTTTATTGAATTTTGTACTGGAAACAACCTCAACTAACCTCATAATCGGCTTCATCAATCATCACGACATTGTTTTCCCCTCCCAAATGATTGCTCGTTTTCTGTTGATTATCATCAACCACCCACTTGTGGTCGACATAGAATTTGTACTCGTGTTTTCCTGGCTCCAAATCAACGATCGTTGAGAAATCGCCCGACGATTTGACAAGAGGAATTCGTTGGTTCCATTTGTCCCACGATCCACAGATTGCTACATTTCGTGCGGATCTGAAATAAAATAATCATATAAAATTCTTAAAATCAGAGAAATTTGAAATCAGAGAGAAATAAACTTACGTGTTGGCTTGGTTCCATTTGAATACCACTGGAAATAATTTGGTCTTGTCGTCGCTTTTGGCGATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACT</canonical>
            <polymorphic>AAACAAGAAGCGAGGAGCCAATACATGGTCATATGCCCTCATTTCTCTATTTTTTATTGAATTTTGTACTGGAAACAACCTCAACTAACCTCATAATCGGCTTCATCAATCATCACGACATTGTTTTCCCCTCCCAAATGATTGCTCGTTTTCTGTTGATTATCATCAACCACCCACTTGTGGTCGACATAGAATTTGTACTCGTGTTTTCCTGGCTCCAAATCAACGATCGTTGAGAAATCGCCCGACGATTTGACAAGAGGAATTCGTTGGTTCCATTTGTCCCACGATCCACAGATTGCTACATTTCGTGCGGATCTGAAATAAAATAATCATATAAAATTCTTAAAATCAGAGAAATTTGAAATCAGAGAGAAATAAACTTACGTGTTGGCTTGGTTCCATTTGAATACCACTGGAAATAATTTGGTCTTGTCGTCGCTTTTGGCGATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTRAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 264 237</canonical_bands>
                <polymorphic_bands>736 264</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>346 265 150 129 87 23</canonical_bands>
                <polymorphic_bands>346 265 150 129 110</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACCACTGGAAATAATTTGGTC</pcr_primer_p1>
		<pcr_primer_p2>CCGTACAAGACCAATACAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATACCACTGGAAATAATTTGGTCTTGTCGTCGCTTTTGGCGATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGG</canonical_amplicon>
		<polymorphic_amplicon>ATACCACTGGAAATAATTTGGTCTTGTCGTCGCTTTTGGCGATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTRAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33960</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>351649</contig_pos>
        <strand>+</strand>
        <context>GTTTTTTGTA[C/T]TTTTGACGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTA</left_flank>
        <right_flank>TTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTATTGAATTTTGTACTGGAAACAACCTCAACTAACCTCATAATCGGCTTCATCAATCATCACGACATTGTTTTCCCCTCCCAAATGATTGCTCGTTTTCTGTTGATTATCATCAACCACCCACTTGTGGTCGACATAGAATTTGTACTCGTGTTTTCCTGGCTCCAAATCAACGATCGTTGAGAAATCGCCCGACGATTTGACAAGAGGAATTCGTTGGTTCCATTTGTCCCACGATCCACAGATTGCTACATTTCGTGCGGATCTGAAATAAAATAATCATATAAAATTCTTAAAATCAGAGAAATTTGAAATCAGAGAGAAATAAACTTACGTGTTGGCTTGGTTCCATTTGAATACCACTGGAAATAATTTGGTCTTGTCGTCGCTTTTGGCGATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGG</canonical>
            <polymorphic>TTTTTATTGAATTTTGTACTGGAAACAACCTCAACTAACCTCATAATCGGCTTCATCAATCATCACGACATTGTTTTCCCCTCCCAAATGATTGCTCGTTTTCTGTTGATTATCATCAACCACCCACTTGTGGTCGACATAGAATTTGTACTCGTGTTTTCCTGGCTCCAAATCAACGATCGTTGAGAAATCGCCCGACGATTTGACAAGAGGAATTCGTTGGTTCCATTTGTCCCACGATCCACAGATTGCTACATTTCGTGCGGATCTGAAATAAAATAATCATATAAAATTCTTAAAATCAGAGAAATTTGAAATCAGAGAGAAATAAACTTACGTGTTGGCTTGGTTCCATTTGAATACCACTGGAAATAATTTGGTCTTGTCGTCGCTTTTGGCGATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTAYTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>349 225 170 132 78 29 17</canonical_bands>
                <polymorphic_bands>378 225 170 132 78 17</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>475 349 132 29 15</canonical_bands>
                <polymorphic_bands>475 378 132 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACCACTGGAAATAATTTGGTC</pcr_primer_p1>
		<pcr_primer_p2>CCGTACAAGACCAATACAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATACCACTGGAAATAATTTGGTCTTGTCGTCGCTTTTGGCGATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGG</canonical_amplicon>
		<polymorphic_amplicon>ATACCACTGGAAATAATTTGGTCTTGTCGTCGCTTTTGGCGATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTAYTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33961</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>351724</contig_pos>
        <strand>+</strand>
        <context>AATATCAGTT[C/T]TATCCTATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTT</left_flank>
        <right_flank>TATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCCCTCCCAAATGATTGCTCGTTTTCTGTTGATTATCATCAACCACCCACTTGTGGTCGACATAGAATTTGTACTCGTGTTTTCCTGGCTCCAAATCAACGATCGTTGAGAAATCGCCCGACGATTTGACAAGAGGAATTCGTTGGTTCCATTTGTCCCACGATCCACAGATTGCTACATTTCGTGCGGATCTGAAATAAAATAATCATATAAAATTCTTAAAATCAGAGAAATTTGAAATCAGAGAGAAATAAACTTACGTGTTGGCTTGGTTCCATTTGAATACCACTGGAAATAATTTGGTCTTGTCGTCGCTTTTGGCGATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTT</canonical>
            <polymorphic>TTCCCCTCCCAAATGATTGCTCGTTTTCTGTTGATTATCATCAACCACCCACTTGTGGTCGACATAGAATTTGTACTCGTGTTTTCCTGGCTCCAAATCAACGATCGTTGAGAAATCGCCCGACGATTTGACAAGAGGAATTCGTTGGTTCCATTTGTCCCACGATCCACAGATTGCTACATTTCGTGCGGATCTGAAATAAAATAATCATATAAAATTCTTAAAATCAGAGAAATTTGAAATCAGAGAGAAATAAACTTACGTGTTGGCTTGGTTCCATTTGAATACCACTGGAAATAATTTGGTCTTGTCGTCGCTTTTGGCGATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTYTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACGAAATTGAACACAATCTA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTGTCTTTTCCTCTCTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTYTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33962</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>351764</contig_pos>
        <strand>+</strand>
        <context>TACGGAATCC[A/G]AAAAAAAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCC</left_flank>
        <right_flank>AAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAACCACCCACTTGTGGTCGACATAGAATTTGTACTCGTGTTTTCCTGGCTCCAAATCAACGATCGTTGAGAAATCGCCCGACGATTTGACAAGAGGAATTCGTTGGTTCCATTTGTCCCACGATCCACAGATTGCTACATTTCGTGCGGATCTGAAATAAAATAATCATATAAAATTCTTAAAATCAGAGAAATTTGAAATCAGAGAGAAATAAACTTACGTGTTGGCTTGGTTCCATTTGAATACCACTGGAAATAATTTGGTCTTGTCGTCGCTTTTGGCGATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTTGTTTTTTGAAGTAATACTTTATTCCTAATTTTCGTATCTT</canonical>
            <polymorphic>TCAACCACCCACTTGTGGTCGACATAGAATTTGTACTCGTGTTTTCCTGGCTCCAAATCAACGATCGTTGAGAAATCGCCCGACGATTTGACAAGAGGAATTCGTTGGTTCCATTTGTCCCACGATCCACAGATTGCTACATTTCGTGCGGATCTGAAATAAAATAATCATATAAAATTCTTAAAATCAGAGAAATTTGAAATCAGAGAGAAATAAACTTACGTGTTGGCTTGGTTCCATTTGAATACCACTGGAAATAATTTGGTCTTGTCGTCGCTTTTGGCGATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCRAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTTGTTTTTTGAAGTAATACTTTATTCCTAATTTTCGTATCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACGAAATTGAACACAATCTA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTGTCTTTTCCTCTCTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCRAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33963</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>351780</contig_pos>
        <strand></strand>
        <context>AAATAATTGT[T/A]TCCTATTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGT</left_flank>
        <right_flank>TCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTCGACATAGAATTTGTACTCGTGTTTTCCTGGCTCCAAATCAACGATCGTTGAGAAATCGCCCGACGATTTGACAAGAGGAATTCGTTGGTTCCATTTGTCCCACGATCCACAGATTGCTACATTTCGTGCGGATCTGAAATAAAATAATCATATAAAATTCTTAAAATCAGAGAAATTTGAAATCAGAGAGAAATAAACTTACGTGTTGGCTTGGTTCCATTTGAATACCACTGGAAATAATTTGGTCTTGTCGTCGCTTTTGGCGATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTTGTTTTTTGAAGTAATACTTTATTCCTAATTTTCGTATCTTTTAAAGGAGGCCAGAC</canonical>
            <polymorphic>GGTCGACATAGAATTTGTACTCGTGTTTTCCTGGCTCCAAATCAACGATCGTTGAGAAATCGCCCGACGATTTGACAAGAGGAATTCGTTGGTTCCATTTGTCCCACGATCCACAGATTGCTACATTTCGTGCGGATCTGAAATAAAATAATCATATAAAATTCTTAAAATCAGAGAAATTTGAAATCAGAGAGAAATAAACTTACGTGTTGGCTTGGTTCCATTTGAATACCACTGGAAATAATTTGGTCTTGTCGTCGCTTTTGGCGATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTWTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTTGTTTTTTGAAGTAATACTTTATTCCTAATTTTCGTATCTTTTAAAGGAGGCCAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACGAAATTGAACACAATCTA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTGTCTTTTCCTCTCTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTWTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33964</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>351797</contig_pos>
        <strand></strand>
        <context>TTTCATTTGA[G/A]AAGAGAGATC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGA</left_flank>
        <right_flank>AAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTCGTGTTTTCCTGGCTCCAAATCAACGATCGTTGAGAAATCGCCCGACGATTTGACAAGAGGAATTCGTTGGTTCCATTTGTCCCACGATCCACAGATTGCTACATTTCGTGCGGATCTGAAATAAAATAATCATATAAAATTCTTAAAATCAGAGAAATTTGAAATCAGAGAGAAATAAACTTACGTGTTGGCTTGGTTCCATTTGAATACCACTGGAAATAATTTGGTCTTGTCGTCGCTTTTGGCGATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTTGTTTTTTGAAGTAATACTTTATTCCTAATTTTCGTATCTTTTAAAGGAGGCCAGACACCAAAAAAAAATTTTT</canonical>
            <polymorphic>TACTCGTGTTTTCCTGGCTCCAAATCAACGATCGTTGAGAAATCGCCCGACGATTTGACAAGAGGAATTCGTTGGTTCCATTTGTCCCACGATCCACAGATTGCTACATTTCGTGCGGATCTGAAATAAAATAATCATATAAAATTCTTAAAATCAGAGAAATTTGAAATCAGAGAGAAATAAACTTACGTGTTGGCTTGGTTCCATTTGAATACCACTGGAAATAATTTGGTCTTGTCGTCGCTTTTGGCGATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGARAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTTGTTTTTTGAAGTAATACTTTATTCCTAATTTTCGTATCTTTTAAAGGAGGCCAGACACCAAAAAAAAATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACGAAATTGAACACAATCTA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTGTCTTTTCCTCTCTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGARAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33965</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>351907</contig_pos>
        <strand>+</strand>
        <context>AACGTATGAC[A/T]GACMAAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGAC</left_flank>
        <right_flank>GACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTGCGGATCTGAAATAAAATAATCATATAAAATTCTTAAAATCAGAGAAATTTGAAATCAGAGAGAAATAAACTTACGTGTTGGCTTGGTTCCATTTGAATACCACTGGAAATAATTTGGTCTTGTCGTCGCTTTTGGCGATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTTGTTTTTTGAAGTAATACTTTATTCCTAATTTTCGTATCTTTTAAAGGAGGCCAGACACCAAAAAAAAATTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTGCAGCGCCGCTATCGGCTGAGCTACGGAGGCGCGAAGGCGCCTGACAA</canonical>
            <polymorphic>TCGTGCGGATCTGAAATAAAATAATCATATAAAATTCTTAAAATCAGAGAAATTTGAAATCAGAGAGAAATAAACTTACGTGTTGGCTTGGTTCCATTTGAATACCACTGGAAATAATTTGGTCTTGTCGTCGCTTTTGGCGATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACWGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTTGTTTTTTGAAGTAATACTTTATTCCTAATTTTCGTATCTTTTAAAGGAGGCCAGACACCAAAAAAAAATTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTGCAGCGCCGCTATCGGCTGAGCTACGGAGGCGCGAAGGCGCCTGACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTATTTGATTATTGTATTGGTC</pcr_primer_p1>
		<pcr_primer_p2>CACTTTTATTCGATTCTTTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTG</canonical_amplicon>
		<polymorphic_amplicon>TCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACWGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33966</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>351911</contig_pos>
        <strand>+</strand>
        <context>TATGACWGAC[A/C]AAAAAAACTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGAC</left_flank>
        <right_flank>AAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGGATCTGAAATAAAATAATCATATAAAATTCTTAAAATCAGAGAAATTTGAAATCAGAGAGAAATAAACTTACGTGTTGGCTTGGTTCCATTTGAATACCACTGGAAATAATTTGGTCTTGTCGTCGCTTTTGGCGATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTTGTTTTTTGAAGTAATACTTTATTCCTAATTTTCGTATCTTTTAAAGGAGGCCAGACACCAAAAAAAAATTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTGCAGCGCCGCTATCGGCTGAGCTACGGAGGCGCGAAGGCGCCTGACAACCAA</canonical>
            <polymorphic>GCGGATCTGAAATAAAATAATCATATAAAATTCTTAAAATCAGAGAAATTTGAAATCAGAGAGAAATAAACTTACGTGTTGGCTTGGTTCCATTTGAATACCACTGGAAATAATTTGGTCTTGTCGTCGCTTTTGGCGATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACMAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTTGTTTTTTGAAGTAATACTTTATTCCTAATTTTCGTATCTTTTAAAGGAGGCCAGACACCAAAAAAAAATTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTGCAGCGCCGCTATCGGCTGAGCTACGGAGGCGCGAAGGCGCCTGACAACCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTATTTGATTATTGTATTGGTC</pcr_primer_p1>
		<pcr_primer_p2>CACTTTTATTCGATTCTTTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTG</canonical_amplicon>
		<polymorphic_amplicon>TCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACMAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33967</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>351925</contig_pos>
        <strand></strand>
        <context>AAAACTTGGT[A/G]MCGTTTTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGT</left_flank>
        <right_flank>CCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATAATCATATAAAATTCTTAAAATCAGAGAAATTTGAAATCAGAGAGAAATAAACTTACGTGTTGGCTTGGTTCCATTTGAATACCACTGGAAATAATTTGGTCTTGTCGTCGCTTTTGGCGATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTTGTTTTTTGAAGTAATACTTTATTCCTAATTTTCGTATCTTTTAAAGGAGGCCAGACACCAAAAAAAAATTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTGCAGCGCCGCTATCGGCTGAGCTACGGAGGCGCGAAGGCGCCTGACAACCAATGGCCTACATAAGC</canonical>
            <polymorphic>AAATAATCATATAAAATTCTTAAAATCAGAGAAATTTGAAATCAGAGAGAAATAAACTTACGTGTTGGCTTGGTTCCATTTGAATACCACTGGAAATAATTTGGTCTTGTCGTCGCTTTTGGCGATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTRCCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTTGTTTTTTGAAGTAATACTTTATTCCTAATTTTCGTATCTTTTAAAGGAGGCCAGACACCAAAAAAAAATTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTGCAGCGCCGCTATCGGCTGAGCTACGGAGGCGCGAAGGCGCCTGACAACCAATGGCCTACATAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGTACC</site>
                <isoschizomers>
                    <enzyme>Acc65I</enzyme>
                    <enzyme>Asp718I</enzyme>
                    <enzyme>KpnI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>497 474 29</canonical_bands>
                <polymorphic_bands>971 29</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 222 170 78 29</canonical_bands>
                <polymorphic_bands>671 222 78 29</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>388 324 178 110</canonical_bands>
                <polymorphic_bands>434 388 178</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATTATTGTATTGGTCTTGTACG</pcr_primer_p1>
		<pcr_primer_p2>ACGCACTTTTATTCGATTCTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGT</canonical_amplicon>
		<polymorphic_amplicon>TGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTRCCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33968</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>351926</contig_pos>
        <strand></strand>
        <context>AAACTTGGTR[C/A]CGTTTTTCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTA</left_flank>
        <right_flank>CGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAATCATATAAAATTCTTAAAATCAGAGAAATTTGAAATCAGAGAGAAATAAACTTACGTGTTGGCTTGGTTCCATTTGAATACCACTGGAAATAATTTGGTCTTGTCGTCGCTTTTGGCGATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTTGTTTTTTGAAGTAATACTTTATTCCTAATTTTCGTATCTTTTAAAGGAGGCCAGACACCAAAAAAAAATTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTGCAGCGCCGCTATCGGCTGAGCTACGGAGGCGCGAAGGCGCCTGACAACCAATGGCCTACATAAGCG</canonical>
            <polymorphic>AATAATCATATAAAATTCTTAAAATCAGAGAAATTTGAAATCAGAGAGAAATAAACTTACGTGTTGGCTTGGTTCCATTTGAATACCACTGGAAATAATTTGGTCTTGTCGTCGCTTTTGGCGATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTAMCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTTGTTTTTTGAAGTAATACTTTATTCCTAATTTTCGTATCTTTTAAAGGAGGCCAGACACCAAAAAAAAATTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTGCAGCGCCGCTATCGGCTGAGCTACGGAGGCGCGAAGGCGCCTGACAACCAATGGCCTACATAAGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGTACC</site>
                <isoschizomers>
                    <enzyme>Acc65I</enzyme>
                    <enzyme>Asp718I</enzyme>
                    <enzyme>KpnI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>496 474 30</canonical_bands>
                <polymorphic_bands>970 30</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 221 170 78 29</canonical_bands>
                <polymorphic_bands>672 221 78 29</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>474 425 73 28</canonical_bands>
                <polymorphic_bands>899 73 28</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>389 324 177 110</canonical_bands>
                <polymorphic_bands>434 389 177</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATTATTGTATTGGTCTTGTACG</pcr_primer_p1>
		<pcr_primer_p2>ACGCACTTTTATTCGATTCTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGT</canonical_amplicon>
		<polymorphic_amplicon>TGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTAMCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33969</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>352023</contig_pos>
        <strand>+</strand>
        <context>ATTGAAATGG[A/G]RTTTCTCAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGG</left_flank>
        <right_flank>ATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTGGTCTTGTCGTCGCTTTTGGCGATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTTGTTTTTTGAAGTAATACTTTATTCCTAATTTTCGTATCTTTTAAAGGAGGCCAGACACCAAAAAAAAATTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTGCAGCGCCGCTATCGGCTGAGCTACGGAGGCGCGAAGGCGCCTGACAACCAATGGCCTACATAAGCGCGGCGCGATTTCGTCCCTTGAACTGTCCCCCAAAATTTTTGCTGTCTCGCCTCCTTTAATACAGTACCAATTATTACAATACACAGTTACCTATTTT</canonical>
            <polymorphic>ATTTGGTCTTGTCGTCGCTTTTGGCGATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGRATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTTGTTTTTTGAAGTAATACTTTATTCCTAATTTTCGTATCTTTTAAAGGAGGCCAGACACCAAAAAAAAATTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTGCAGCGCCGCTATCGGCTGAGCTACGGAGGCGCGAAGGCGCCTGACAACCAATGGCCTACATAAGCGCGGCGCGATTTCGTCCCTTGAACTGTCCCCCAAAATTTTTGCTGTCTCGCCTCCTTTAATACAGTACCAATTATTACAATACACAGTTACCTATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>499 171 169 97 64</canonical_bands>
                <polymorphic_bands>596 171 169 64</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>249 169 112 97 88 87 48 40 35 29 27 19</canonical_bands>
                <polymorphic_bands>346 169 112 88 87 48 40 35 29 27 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGACAAAAAGAATCGAATAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAACGTATTGTTAGGGATCAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTC</canonical_amplicon>
		<polymorphic_amplicon>ATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGRATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33970</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>352024</contig_pos>
        <strand>+</strand>
        <context>TTGAAATGGR[A/G]TTTCTCAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGA</left_flank>
        <right_flank>TTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGGTCTTGTCGTCGCTTTTGGCGATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTTGTTTTTTGAAGTAATACTTTATTCCTAATTTTCGTATCTTTTAAAGGAGGCCAGACACCAAAAAAAAATTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTGCAGCGCCGCTATCGGCTGAGCTACGGAGGCGCGAAGGCGCCTGACAACCAATGGCCTACATAAGCGCGGCGCGATTTCGTCCCTTGAACTGTCCCCCAAAATTTTTGCTGTCTCGCCTCCTTTAATACAGTACCAATTATTACAATACACAGTTACCTATTTTT</canonical>
            <polymorphic>TTTGGTCTTGTCGTCGCTTTTGGCGATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGARTTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTTGTTTTTTGAAGTAATACTTTATTCCTAATTTTCGTATCTTTTAAAGGAGGCCAGACACCAAAAAAAAATTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTGCAGCGCCGCTATCGGCTGAGCTACGGAGGCGCGAAGGCGCCTGACAACCAATGGCCTACATAAGCGCGGCGCGATTTCGTCCCTTGAACTGTCCCCCAAAATTTTTGCTGTCTCGCCTCCTTTAATACAGTACCAATTATTACAATACACAGTTACCTATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>498 171 169 97 65</canonical_bands>
                <polymorphic_bands>595 171 169 65</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>249 169 112 97 88 87 47 40 35 30 27 19</canonical_bands>
                <polymorphic_bands>346 169 112 88 87 47 40 35 30 27 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGACAAAAAGAATCGAATAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAACGTATTGTTAGGGATCAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTC</canonical_amplicon>
		<polymorphic_amplicon>ATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGARTTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33971</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>352049</contig_pos>
        <strand>+</strand>
        <context>TTGGTCTCAT[A/C]CTTAYATCWA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCAT</left_flank>
        <right_flank>CTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTTGTTTTTTGAAGTAATACTTTATTCCTAATTTTCGTATCTTTTAAAGGAGGCCAGACACCAAAAAAAAATTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTGCAGCGCCGCTATCGGCTGAGCTACGGAGGCGCGAAGGCGCCTGACAACCAATGGCCTACATAAGCGCGGCGCGATTTCGTCCCTTGAACTGTCCCCCAAAATTTTTGCTGTCTCGCCTCCTTTAATACAGTACCAATTATTACAATACACAGTTACCTATTTTTAGTAATTTAATGTCTATTATTATCA</canonical>
            <polymorphic>ATTTTCATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATMCTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTTGTTTTTTGAAGTAATACTTTATTCCTAATTTTCGTATCTTTTAAAGGAGGCCAGACACCAAAAAAAAATTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTGCAGCGCCGCTATCGGCTGAGCTACGGAGGCGCGAAGGCGCCTGACAACCAATGGCCTACATAAGCGCGGCGCGATTTCGTCCCTTGAACTGTCCCCCAAAATTTTTGCTGTCTCGCCTCCTTTAATACAGTACCAATTATTACAATACACAGTTACCTATTTTTAGTAATTTAATGTCTATTATTATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGACAAAAAGAATCGAATAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAACGTATTGTTAGGGATCAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTC</canonical_amplicon>
		<polymorphic_amplicon>ATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATMCTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33972</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>352054</contig_pos>
        <strand>+</strand>
        <context>CTCATMCTTA[C/T]ATCWAAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTA</left_flank>
        <right_flank>ATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTTGTTTTTTGAAGTAATACTTTATTCCTAATTTTCGTATCTTTTAAAGGAGGCCAGACACCAAAAAAAAATTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTGCAGCGCCGCTATCGGCTGAGCTACGGAGGCGCGAAGGCGCCTGACAACCAATGGCCTACATAAGCGCGGCGCGATTTCGTCCCTTGAACTGTCCCCCAAAATTTTTGCTGTCTCGCCTCCTTTAATACAGTACCAATTATTACAATACACAGTTACCTATTTTTAGTAATTTAATGTCTATTATTATCATATTC</canonical>
            <polymorphic>CATCTGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTAYATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTTGTTTTTTGAAGTAATACTTTATTCCTAATTTTCGTATCTTTTAAAGGAGGCCAGACACCAAAAAAAAATTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTGCAGCGCCGCTATCGGCTGAGCTACGGAGGCGCGAAGGCGCCTGACAACCAATGGCCTACATAAGCGCGGCGCGATTTCGTCCCTTGAACTGTCCCCCAAAATTTTTGCTGTCTCGCCTCCTTTAATACAGTACCAATTATTACAATACACAGTTACCTATTTTTAGTAATTTAATGTCTATTATTATCATATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGACAAAAAGAATCGAATAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAACGTATTGTTAGGGATCAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTC</canonical_amplicon>
		<polymorphic_amplicon>ATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTAYATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33973</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>352058</contig_pos>
        <strand>+</strand>
        <context>TMCTTAYATC[A/T]AAAAAAACTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATC</left_flank>
        <right_flank>AAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTTGTTTTTTGAAGTAATACTTTATTCCTAATTTTCGTATCTTTTAAAGGAGGCCAGACACCAAAAAAAAATTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTGCAGCGCCGCTATCGGCTGAGCTACGGAGGCGCGAAGGCGCCTGACAACCAATGGCCTACATAAGCGCGGCGCGATTTCGTCCCTTGAACTGTCCCCCAAAATTTTTGCTGTCTCGCCTCCTTTAATACAGTACCAATTATTACAATACACAGTTACCTATTTTTAGTAATTTAATGTCTATTATTATCATATTCAGGA</canonical>
            <polymorphic>TGGAAAATGAAAAAATTAAAGAAAGGTATTATGATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCWAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTTGTTTTTTGAAGTAATACTTTATTCCTAATTTTCGTATCTTTTAAAGGAGGCCAGACACCAAAAAAAAATTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTGCAGCGCCGCTATCGGCTGAGCTACGGAGGCGCGAAGGCGCCTGACAACCAATGGCCTACATAAGCGCGGCGCGATTTCGTCCCTTGAACTGTCCCCCAAAATTTTTGCTGTCTCGCCTCCTTTAATACAGTACCAATTATTACAATACACAGTTACCTATTTTTAGTAATTTAATGTCTATTATTATCATATTCAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGACAAAAAGAATCGAATAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAACGTATTGTTAGGGATCAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTC</canonical_amplicon>
		<polymorphic_amplicon>ATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCWAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33974</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>352090</contig_pos>
        <strand></strand>
        <context>ACAAGGATCT[T/A]ATGGGAACTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCT</left_flank>
        <right_flank>ATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTTGTTTTTTGAAGTAATACTTTATTCCTAATTTTCGTATCTTTTAAAGGAGGCCAGACACCAAAAAAAAATTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTGCAGCGCCGCTATCGGCTGAGCTACGGAGGCGCGAAGGCGCCTGACAACCAATGGCCTACATAAGCGCGGCGCGATTTCGTCCCTTGAACTGTCCCCCAAAATTTTTGCTGTCTCGCCTCCTTTAATACAGTACCAATTATTACAATACACAGTTACCTATTTTTAGTAATTTAATGTCTATTATTATCATATTCAGGAGCCTGGATCCCGGCTGTCAAGTTTACGATCAC</canonical>
            <polymorphic>GATTATTTAAACAGTATTGTGACTGGCTGGCAAAAAAAGGACTGATAAGTTTTTTGTACTTTTGACGAAATTGAACACAATCTAGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTWATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTTGTTTTTTGAAGTAATACTTTATTCCTAATTTTCGTATCTTTTAAAGGAGGCCAGACACCAAAAAAAAATTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTGCAGCGCCGCTATCGGCTGAGCTACGGAGGCGCGAAGGCGCCTGACAACCAATGGCCTACATAAGCGCGGCGCGATTTCGTCCCTTGAACTGTCCCCCAAAATTTTTGCTGTCTCGCCTCCTTTAATACAGTACCAATTATTACAATACACAGTTACCTATTTTTAGTAATTTAATGTCTATTATTATCATATTCAGGAGCCTGGATCCCGGCTGTCAAGTTTACGATCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTCAACAACAGTTGGTCTC</pcr_primer_p1>
		<pcr_primer_p2>CCTCCTTTAAAAGATACGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTTGTTTTTTGAAGTAATACTTTATTCCTAATTTTCGTATCTTTTAAAGGAGG</canonical_amplicon>
		<polymorphic_amplicon>TTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTWATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTTGTTTTTTGAAGTAATACTTTATTCCTAATTTTCGTATCTTTTAAAGGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33975</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>352173</contig_pos>
        <strand>+</strand>
        <context>ATACTTTTTT[A/G]CTGATCCCTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTT</left_flank>
        <right_flank>CTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTTGTTTTTTGAAGTAATACTTTATTCCTAATTTTCGTATCTTTTAAAGGAGGCCAGACACCAAAAAAAAATTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTGCAGCGCCGCTATCGGCTGAGCTACGGAGGCGCGAAGGCGCCTGACAACCAATGGCCTACATAAGCGCGGCGCGATTTCGTCCCTTGAACTGTCCCCCAAAATTTTTGCTGTCTCGCCTCCTTTAATACAGTACCAATTATTACAATACACAGTTACCTATTTTTAGTAATTTAATGTCTATTATTATCATATTCAGGAGCCTGGATCCCGGCTGTCAAGTTTACGATCACTCTGAAAATTTTGAAAGGTATAGAGCACATCTGAACTGATAATTTTGCACTCGCAGAGTTTCTAGTTTTTAGATGTTTGCCGA</canonical>
            <polymorphic>AGTACAACGATTAATTGATCAGTTTCCAACCTACTCGAAAAATATCAGTTTTATCCTATTTGATTATTGTATTGGTCTTGTACGGAATCCAAAAAAAAATAATTGTTTCCTATTTTCATTTGAGAAGAGAGATCTGAGTCTGATAAGATAAGAGATTATTTTAAAAGAAAAAAAACACTTCCTTCTCGGATCGGACACTATTTGAAAAGAGAGGAAAAGACAAAACGTATGACTGACAAAAAAAACTTGGTACCGTTTTTCTGAGGTGGATGTTCATATGACAAAAAGAATCGAATAAAAGTGCGTGTGTGTCCAGCCCTAGAAAAACCATTCGTCTTCATTGAAATGGAATTTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTRCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTTGTTTTTTGAAGTAATACTTTATTCCTAATTTTCGTATCTTTTAAAGGAGGCCAGACACCAAAAAAAAATTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGGTGCAGCGCCGCTATCGGCTGAGCTACGGAGGCGCGAAGGCGCCTGACAACCAATGGCCTACATAAGCGCGGCGCGATTTCGTCCCTTGAACTGTCCCCCAAAATTTTTGCTGTCTCGCCTCCTTTAATACAGTACCAATTATTACAATACACAGTTACCTATTTTTAGTAATTTAATGTCTATTATTATCATATTCAGGAGCCTGGATCCCGGCTGTCAAGTTTACGATCACTCTGAAAATTTTGAAAGGTATAGAGCACATCTGAACTGATAATTTTGCACTCGCAGAGTTTCTAGTTTTTAGATGTTTGCCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTCAACAACAGTTGGTCTC</pcr_primer_p1>
		<pcr_primer_p2>CCTCCTTTAAAAGATACGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTGCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTTGTTTTTTGAAGTAATACTTTATTCCTAATTTTCGTATCTTTTAAAGGAGG</canonical_amplicon>
		<polymorphic_amplicon>TTCTCAACAACAGTTGGTCTCATACTTATATCAAAAAAAACTTGACCTCAAGGCACAAGGATCTTATGGGAACTAAAGACACCATTTTTTTGAAAATTTTTTTTATTCCCTATAATTTATGAGGCATTATTCAGAATATACTTTTTTRCTGATCCCTAACAATACGTTTCGGATGGCTAATATTTCAAAAAGTAAGTTTGTTTTTTGAAGTAATACTTTATTCCTAATTTTCGTATCTTTTAAAGGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33976</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>359340</contig_pos>
        <strand></strand>
        <context>TACAGttttc[A/G]rttgattgtc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCTTGGGAGTGTCTTCAATAACAAAGTCAGTTATCACTATACAGTTTTC</left_flank>
        <right_flank>GTTGATTGTCGACCATTTTGACCGTTTTCAGTAGTCTGGAGCTCGGATGT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCGCACTGAAAAGAAAAACTTTTAACATTTTTTTACATCTGTGTCAATGCTTACATATTCTGGATGCTTTGATGCACTGTAGAAATGGTCCAAACTCAACTTTCTAACAGAGTATCTCTTCAGAAGGGATGACTTATCCTCACTGGGAAGATCTGTATAAGGCTGTTGTTTTTCAATCCAGTACAAAAGTCCAGTGAGCTCCACAGCTGATAACTTGCTGACATCTACTGGATCCATCCTTCTGAGTTTTTGTCCTGTGGCCAGTTCGTCCAAAAACTGTTCGAAGGTGGAGAAGGAAAGTTGCATCATACGTTGGTGCTCTCCGTACGCGAAGACAAGATGATTGAATTCTTGTTGATCGTCATCGGTTGGTGTAGCTTGACGGGACATTTGGAACTGAAAATTTTGGGTAAAAATCAAAAAATTAGAGTGTTTACAGAATATTTTGTGCTTGGGAGTGTCTTCAATAACAAAGTCAGTTATCACTATACAGTTTTCAGTTGATTGTCGACCATTTTGACCGTTTTCAGTAGTCTGGAGCTCGGATGTCAAGTTTGCGATTATTTTGAAAATACTGGAGGGTGTGAAGCAGAGTTAGATTGACAACTTTGCATTCACAGAATTTTTTAAAAATTTAATTTTGTTTTAGATTTCCAAAATAACCGCTTTGGGACCGTTTTATTGCTGAAAATGGGAAAAAAGTGGGAGTGAAAAAACAGTGTTTTTTGCGTTTTGAGTACAAAAACAGGCAAAAAGGTGCCTTTCAGAAACTGGCAAATACCGTAAAACCTCTAATAGAACGACACCCAGACATCACAATCTATTGTCTCTCGTCTCTGATCAGTATCGATACTTTCACTATCACTGTTACCGTCATCACATTCGCCATACTTGTTTGCCTCGAAGCTCTTCTCTGAAATATTCTCTTCTTTTTTGTCATTACGTCTCCACGTGCTTATCAATCATCCAACTGATANNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>GGCGCACTGAAAAGAAAAACTTTTAACATTTTTTTACATCTGTGTCAATGCTTACATATTCTGGATGCTTTGATGCACTGTAGAAATGGTCCAAACTCAACTTTCTAACAGAGTATCTCTTCAGAAGGGATGACTTATCCTCACTGGGAAGATCTGTATAAGGCTGTTGTTTTTCAATCCAGTACAAAAGTCCAGTGAGCTCCACAGCTGATAACTTGCTGACATCTACTGGATCCATCCTTCTGAGTTTTTGTCCTGTGGCCAGTTCGTCCAAAAACTGTTCGAAGGTGGAGAAGGAAAGTTGCATCATACGTTGGTGCTCTCCGTACGCGAAGACAAGATGATTGAATTCTTGTTGATCGTCATCGGTTGGTGTAGCTTGACGGGACATTTGGAACTGAAAATTTTGGGTAAAAATCAAAAAATTAGAGTGTTTACAGAATATTTTGTGCTTGGGAGTGTCTTCAATAACAAAGTCAGTTATCACTATACAGTTTTCRGTTGATTGTCGACCATTTTGACCGTTTTCAGTAGTCTGGAGCTCGGATGTCAAGTTTGCGATTATTTTGAAAATACTGGAGGGTGTGAAGCAGAGTTAGATTGACAACTTTGCATTCACAGAATTTTTTAAAAATTTAATTTTGTTTTAGATTTCCAAAATAACCGCTTTGGGACCGTTTTATTGCTGAAAATGGGAAAAAAGTGGGAGTGAAAAAACAGTGTTTTTTGCGTTTTGAGTACAAAAACAGGCAAAAAGGTGCCTTTCAGAAACTGGCAAATACCGTAAAACCTCTAATAGAACGACACCCAGACATCACAATCTATTGTCTCTCGTCTCTGATCAGTATCGATACTTTCACTATCACTGTTACCGTCATCACATTCGCCATACTTGTTTGCCTCGAAGCTCTTCTCTGAAATATTCTCTTCTTTTTTGTCATTACGTCTCCACGTGCTTATCAATCATCCAACTGATANNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTGGGAGTGTCTTCAATA</pcr_primer_p1>
		<pcr_primer_p2>TGTCTGGGTGTCGTTCTATTA</pcr_primer_p2>
		<pcr_amplicon_size>364</pcr_amplicon_size>
		<canonical_amplicon>GCTTGGGAGTGTCTTCAATAACAAAGTCAGTTATCACTATACAGTTTTCAGTTGATTGTCGACCATTTTGACCGTTTTCAGTAGTCTGGAGCTCGGATGTCAAGTTTGCGATTATTTTGAAAATACTGGAGGGTGTGAAGCAGAGTTAGATTGACAACTTTGCATTCACAGAATTTTTTAAAAATTTAATTTTGTTTTAGATTTCCAAAATAACCGCTTTGGGACCGTTTTATTGCTGAAAATGGGAAAAAAGTGGGAGTGAAAAAACAGTGTTTTTTGCGTTTTGAGTACAAAAACAGGCAAAAAGGTGCCTTTCAGAAACTGGCAAATACCGTAAAACCTCTAATAGAACGACACCCAGACA</canonical_amplicon>
		<polymorphic_amplicon>GCTTGGGAGTGTCTTCAATAACAAAGTCAGTTATCACTATACAGTTTTCRGTTGATTGTCGACCATTTTGACCGTTTTCAGTAGTCTGGAGCTCGGATGTCAAGTTTGCGATTATTTTGAAAATACTGGAGGGTGTGAAGCAGAGTTAGATTGACAACTTTGCATTCACAGAATTTTTTAAAAATTTAATTTTGTTTTAGATTTCCAAAATAACCGCTTTGGGACCGTTTTATTGCTGAAAATGGGAAAAAAGTGGGAGTGAAAAAACAGTGTTTTTTGCGTTTTGAGTACAAAAACAGGCAAAAAGGTGCCTTTCAGAAACTGGCAAATACCGTAAAACCTCTAATAGAACGACACCCAGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33977</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>359341</contig_pos>
        <strand></strand>
        <context>ACAGttttcr[G/A]ttgattgtcg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GCTTGGGAGTGTCTTCAATAACAAAGTCAGTTATCACTATACAGTTTTCA</left_flank>
        <right_flank>TTGATTGTCGACCATTTTGACCGTTTTCAGTAGTCTGGAGCTCGGATGTC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGCACTGAAAAGAAAAACTTTTAACATTTTTTTACATCTGTGTCAATGCTTACATATTCTGGATGCTTTGATGCACTGTAGAAATGGTCCAAACTCAACTTTCTAACAGAGTATCTCTTCAGAAGGGATGACTTATCCTCACTGGGAAGATCTGTATAAGGCTGTTGTTTTTCAATCCAGTACAAAAGTCCAGTGAGCTCCACAGCTGATAACTTGCTGACATCTACTGGATCCATCCTTCTGAGTTTTTGTCCTGTGGCCAGTTCGTCCAAAAACTGTTCGAAGGTGGAGAAGGAAAGTTGCATCATACGTTGGTGCTCTCCGTACGCGAAGACAAGATGATTGAATTCTTGTTGATCGTCATCGGTTGGTGTAGCTTGACGGGACATTTGGAACTGAAAATTTTGGGTAAAAATCAAAAAATTAGAGTGTTTACAGAATATTTTGTGCTTGGGAGTGTCTTCAATAACAAAGTCAGTTATCACTATACAGTTTTCAGTTGATTGTCGACCATTTTGACCGTTTTCAGTAGTCTGGAGCTCGGATGTCAAGTTTGCGATTATTTTGAAAATACTGGAGGGTGTGAAGCAGAGTTAGATTGACAACTTTGCATTCACAGAATTTTTTAAAAATTTAATTTTGTTTTAGATTTCCAAAATAACCGCTTTGGGACCGTTTTATTGCTGAAAATGGGAAAAAAGTGGGAGTGAAAAAACAGTGTTTTTTGCGTTTTGAGTACAAAAACAGGCAAAAAGGTGCCTTTCAGAAACTGGCAAATACCGTAAAACCTCTAATAGAACGACACCCAGACATCACAATCTATTGTCTCTCGTCTCTGATCAGTATCGATACTTTCACTATCACTGTTACCGTCATCACATTCGCCATACTTGTTTGCCTCGAAGCTCTTCTCTGAAATATTCTCTTCTTTTTTGTCATTACGTCTCCACGTGCTTATCAATCATCCAACTGATANNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>GCGCACTGAAAAGAAAAACTTTTAACATTTTTTTACATCTGTGTCAATGCTTACATATTCTGGATGCTTTGATGCACTGTAGAAATGGTCCAAACTCAACTTTCTAACAGAGTATCTCTTCAGAAGGGATGACTTATCCTCACTGGGAAGATCTGTATAAGGCTGTTGTTTTTCAATCCAGTACAAAAGTCCAGTGAGCTCCACAGCTGATAACTTGCTGACATCTACTGGATCCATCCTTCTGAGTTTTTGTCCTGTGGCCAGTTCGTCCAAAAACTGTTCGAAGGTGGAGAAGGAAAGTTGCATCATACGTTGGTGCTCTCCGTACGCGAAGACAAGATGATTGAATTCTTGTTGATCGTCATCGGTTGGTGTAGCTTGACGGGACATTTGGAACTGAAAATTTTGGGTAAAAATCAAAAAATTAGAGTGTTTACAGAATATTTTGTGCTTGGGAGTGTCTTCAATAACAAAGTCAGTTATCACTATACAGTTTTCARTTGATTGTCGACCATTTTGACCGTTTTCAGTAGTCTGGAGCTCGGATGTCAAGTTTGCGATTATTTTGAAAATACTGGAGGGTGTGAAGCAGAGTTAGATTGACAACTTTGCATTCACAGAATTTTTTAAAAATTTAATTTTGTTTTAGATTTCCAAAATAACCGCTTTGGGACCGTTTTATTGCTGAAAATGGGAAAAAAGTGGGAGTGAAAAAACAGTGTTTTTTGCGTTTTGAGTACAAAAACAGGCAAAAAGGTGCCTTTCAGAAACTGGCAAATACCGTAAAACCTCTAATAGAACGACACCCAGACATCACAATCTATTGTCTCTCGTCTCTGATCAGTATCGATACTTTCACTATCACTGTTACCGTCATCACATTCGCCATACTTGTTTGCCTCGAAGCTCTTCTCTGAAATATTCTCTTCTTTTTTGTCATTACGTCTCCACGTGCTTATCAATCATCCAACTGATANNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTGGGAGTGTCTTCAATA</pcr_primer_p1>
		<pcr_primer_p2>TGTCTGGGTGTCGTTCTATTA</pcr_primer_p2>
		<pcr_amplicon_size>364</pcr_amplicon_size>
		<canonical_amplicon>GCTTGGGAGTGTCTTCAATAACAAAGTCAGTTATCACTATACAGTTTTCAGTTGATTGTCGACCATTTTGACCGTTTTCAGTAGTCTGGAGCTCGGATGTCAAGTTTGCGATTATTTTGAAAATACTGGAGGGTGTGAAGCAGAGTTAGATTGACAACTTTGCATTCACAGAATTTTTTAAAAATTTAATTTTGTTTTAGATTTCCAAAATAACCGCTTTGGGACCGTTTTATTGCTGAAAATGGGAAAAAAGTGGGAGTGAAAAAACAGTGTTTTTTGCGTTTTGAGTACAAAAACAGGCAAAAAGGTGCCTTTCAGAAACTGGCAAATACCGTAAAACCTCTAATAGAACGACACCCAGACA</canonical_amplicon>
		<polymorphic_amplicon>GCTTGGGAGTGTCTTCAATAACAAAGTCAGTTATCACTATACAGTTTTCARTTGATTGTCGACCATTTTGACCGTTTTCAGTAGTCTGGAGCTCGGATGTCAAGTTTGCGATTATTTTGAAAATACTGGAGGGTGTGAAGCAGAGTTAGATTGACAACTTTGCATTCACAGAATTTTTTAAAAATTTAATTTTGTTTTAGATTTCCAAAATAACCGCTTTGGGACCGTTTTATTGCTGAAAATGGGAAAAAAGTGGGAGTGAAAAAACAGTGTTTTTTGCGTTTTGAGTACAAAAACAGGCAAAAAGGTGCCTTTCAGAAACTGGCAAATACCGTAAAACCTCTAATAGAACGACACCCAGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33978</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>366456</contig_pos>
        <strand>+</strand>
        <context>tttcaaatta[A/T]ttcggycaca</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTTTAATGGTAATAGAATGCAAGCTGGAATATCTCAACTTTTCAAATTA</left_flank>
        <right_flank>TTCGGCCACAATTTGAAAAAAAACCCAAAAACCTATCATGAGTGGTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAGAGAACCAAATTTGGCTAGTTATTGTCTTTTTCTGCAAAAGCACAAATTTTTATCAGTTCTCTCGTTTTTTCTCTCATCTATGGTTGGCCGAGTCGCCACTTCCCGGTGATCTTGGATCCCTAAATTATCGAGGAGAAAGAAAGGAAAAAGCCAATCGGAAGCTTATGAAAAATGTTTACATACGCTCTTCACTCAGAGGCTACGCTGTTAGAACAAGTGATTTTTGTGCAACACCACAGGACCTTATATTGGCACAAGAAGATAGAAGTAGCACAAAGCAGACAGTTTACAAGAGCACAAATTAATTGGGCTTTGTTGGTTTCGGGCGGATAAATGAAGTTTGTGTTTTCATTTGAGATTTTTGAAAATTGCAAAAATTAGTTAAAAATTGTTTTTATGAATCAACTCGCAATATGTTATTTCTGGCGTAACACAAGTATGGCAGCTTTAATGGTAATAGAATGCAAGCTGGAATATCTCAACTTTTCAAATTATTTCGGCCACAATTTGAAAAAAAACCCAAAAACCTATCATGAGTGGTTTTCAAATAAATACTCACTGCTTTTTCTACAACTGTCCGCCGAAAAAATGCATTGCAGGAACGACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGATTTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCTCGGCCGATTTTATATTCCCTAATTTATCAAACAGCACCGACCAAAAATAATTTCAAAAAATATGTAAACCCTGATTTTTAAAAAAGTTGTACCTGCGAATTATATTCGTCTTTCATAATCCGCGCGGATGACGTGGAAGGCG</canonical>
            <polymorphic>TCCAGAGAACCAAATTTGGCTAGTTATTGTCTTTTTCTGCAAAAGCACAAATTTTTATCAGTTCTCTCGTTTTTTCTCTCATCTATGGTTGGCCGAGTCGCCACTTCCCGGTGATCTTGGATCCCTAAATTATCGAGGAGAAAGAAAGGAAAAAGCCAATCGGAAGCTTATGAAAAATGTTTACATACGCTCTTCACTCAGAGGCTACGCTGTTAGAACAAGTGATTTTTGTGCAACACCACAGGACCTTATATTGGCACAAGAAGATAGAAGTAGCACAAAGCAGACAGTTTACAAGAGCACAAATTAATTGGGCTTTGTTGGTTTCGGGCGGATAAATGAAGTTTGTGTTTTCATTTGAGATTTTTGAAAATTGCAAAAATTAGTTAAAAATTGTTTTTATGAATCAACTCGCAATATGTTATTTCTGGCGTAACACAAGTATGGCAGCTTTAATGGTAATAGAATGCAAGCTGGAATATCTCAACTTTTCAAATTAWTTCGGCCACAATTTGAAAAAAAACCCAAAAACCTATCATGAGTGGTTTTCAAATAAATACTCACTGCTTTTTCTACAACTGTCCGCCGAAAAAATGCATTGCAGGAACGACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGATTTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCTCGGCCGATTTTATATTCCCTAATTTATCAAACAGCACCGACCAAAAATAATTTCAAAAAATATGTAAACCCTGATTTTTAAAAAAGTTGTACCTGCGAATTATATTCGTCTTTCATAATCCGCGCGGATGACGTGGAAGGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATAAATGAAGTTTGTGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>ACAGTTGTAGAAAAAGCAGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGATAAATGAAGTTTGTGTTTTCATTTGAGATTTTTGAAAATTGCAAAAATTAGTTAAAAATTGTTTTTATGAATCAACTCGCAATATGTTATTTCTGGCGTAACACAAGTATGGCAGCTTTAATGGTAATAGAATGCAAGCTGGAATATCTCAACTTTTCAAATTATTTCGGCCACAATTTGAAAAAAAACCCAAAAACCTATCATGAGTGGTTTTCAAATAAATACTCACTGCTTTTTCTACAACTGT</canonical_amplicon>
		<polymorphic_amplicon>GGATAAATGAAGTTTGTGTTTTCATTTGAGATTTTTGAAAATTGCAAAAATTAGTTAAAAATTGTTTTTATGAATCAACTCGCAATATGTTATTTCTGGCGTAACACAAGTATGGCAGCTTTAATGGTAATAGAATGCAAGCTGGAATATCTCAACTTTTCAAATTAWTTCGGCCACAATTTGAAAAAAAACCCAAAAACCTATCATGAGTGGTTTTCAAATAAATACTCACTGCTTTTTCTACAACTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33979</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>366637</contig_pos>
        <strand>+</strand>
        <context>AAAAATATTG[A/T]RTTTTTTTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTG</left_flank>
        <right_flank>TTTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACATACGCTCTTCACTCAGAGGCTACGCTGTTAGAACAAGTGATTTTTGTGCAACACCACAGGACCTTATATTGGCACAAGAAGATAGAAGTAGCACAAAGCAGACAGTTTACAAGAGCACAAATTAATTGGGCTTTGTTGGTTTCGGGCGGATAAATGAAGTTTGTGTTTTCATTTGAGATTTTTGAAAATTGCAAAAATTAGTTAAAAATTGTTTTTATGAATCAACTCGCAATATGTTATTTCTGGCGTAACACAAGTATGGCAGCTTTAATGGTAATAGAATGCAAGCTGGAATATCTCAACTTTTCAAATTATTTCGGCCACAATTTGAAAAAAAACCCAAAAACCTATCATGAGTGGTTTTCAAATAAATACTCACTGCTTTTTCTACAACTGTCCGCCGAAAAAATGCATTGCAGGAACGACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGATTTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCTCGGCCGATTTTATATTCCCTAATTTATCAAACAGCACCGACCAAAAATAATTTCAAAAAATATGTAAACCCTGATTTTTAAAAAAGTTGTACCTGCGAATTATATTCGTCTTTCATAATCCGCGCGGATGACGTGGAAGGCGTGGATGATGATAGCGGCGAAATTTTGACGGCTGTGACGGTGTCGTTTCAAGATGTTGTTGTTTCCAGTCGGGGTGTGGTGGATCACAGAAGAAGCGTCGAACACGACGACGAACGGGACCAGACGACGATGGTGATGTGTTGTTTGTCACCACAGAGGCTCTTCGCTTCCTACTAGGTGGG</canonical>
            <polymorphic>TACATACGCTCTTCACTCAGAGGCTACGCTGTTAGAACAAGTGATTTTTGTGCAACACCACAGGACCTTATATTGGCACAAGAAGATAGAAGTAGCACAAAGCAGACAGTTTACAAGAGCACAAATTAATTGGGCTTTGTTGGTTTCGGGCGGATAAATGAAGTTTGTGTTTTCATTTGAGATTTTTGAAAATTGCAAAAATTAGTTAAAAATTGTTTTTATGAATCAACTCGCAATATGTTATTTCTGGCGTAACACAAGTATGGCAGCTTTAATGGTAATAGAATGCAAGCTGGAATATCTCAACTTTTCAAATTATTTCGGCCACAATTTGAAAAAAAACCCAAAAACCTATCATGAGTGGTTTTCAAATAAATACTCACTGCTTTTTCTACAACTGTCCGCCGAAAAAATGCATTGCAGGAACGACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGWTTTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCTCGGCCGATTTTATATTCCCTAATTTATCAAACAGCACCGACCAAAAATAATTTCAAAAAATATGTAAACCCTGATTTTTAAAAAAGTTGTACCTGCGAATTATATTCGTCTTTCATAATCCGCGCGGATGACGTGGAAGGCGTGGATGATGATAGCGGCGAAATTTTGACGGCTGTGACGGTGTCGTTTCAAGATGTTGTTGTTTCCAGTCGGGGTGTGGTGGATCACAGAAGAAGCGTCGAACACGACGACGAACGGGACCAGACGACGATGGTGATGTGTTGTTTGTCACCACAGAGGCTCTTCGCTTCCTACTAGGTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAACTAATTGCTCCATAGTGAA</pcr_primer_p1>
		<pcr_primer_p2>AGATAAAAGATGGTGCCCTAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGATTTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCT</canonical_amplicon>
		<polymorphic_amplicon>ACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGWTTTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33980</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>366638</contig_pos>
        <strand>+</strand>
        <context>AAAATATTGW[A/G]TTTTTTTAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGA</left_flank>
        <right_flank>TTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACATCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATACGCTCTTCACTCAGAGGCTACGCTGTTAGAACAAGTGATTTTTGTGCAACACCACAGGACCTTATATTGGCACAAGAAGATAGAAGTAGCACAAAGCAGACAGTTTACAAGAGCACAAATTAATTGGGCTTTGTTGGTTTCGGGCGGATAAATGAAGTTTGTGTTTTCATTTGAGATTTTTGAAAATTGCAAAAATTAGTTAAAAATTGTTTTTATGAATCAACTCGCAATATGTTATTTCTGGCGTAACACAAGTATGGCAGCTTTAATGGTAATAGAATGCAAGCTGGAATATCTCAACTTTTCAAATTATTTCGGCCACAATTTGAAAAAAAACCCAAAAACCTATCATGAGTGGTTTTCAAATAAATACTCACTGCTTTTTCTACAACTGTCCGCCGAAAAAATGCATTGCAGGAACGACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGATTTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCTCGGCCGATTTTATATTCCCTAATTTATCAAACAGCACCGACCAAAAATAATTTCAAAAAATATGTAAACCCTGATTTTTAAAAAAGTTGTACCTGCGAATTATATTCGTCTTTCATAATCCGCGCGGATGACGTGGAAGGCGTGGATGATGATAGCGGCGAAATTTTGACGGCTGTGACGGTGTCGTTTCAAGATGTTGTTGTTTCCAGTCGGGGTGTGGTGGATCACAGAAGAAGCGTCGAACACGACGACGAACGGGACCAGACGACGATGGTGATGTGTTGTTTGTCACCACAGAGGCTCTTCGCTTCCTACTAGGTGGGC</canonical>
            <polymorphic>ACATACGCTCTTCACTCAGAGGCTACGCTGTTAGAACAAGTGATTTTTGTGCAACACCACAGGACCTTATATTGGCACAAGAAGATAGAAGTAGCACAAAGCAGACAGTTTACAAGAGCACAAATTAATTGGGCTTTGTTGGTTTCGGGCGGATAAATGAAGTTTGTGTTTTCATTTGAGATTTTTGAAAATTGCAAAAATTAGTTAAAAATTGTTTTTATGAATCAACTCGCAATATGTTATTTCTGGCGTAACACAAGTATGGCAGCTTTAATGGTAATAGAATGCAAGCTGGAATATCTCAACTTTTCAAATTATTTCGGCCACAATTTGAAAAAAAACCCAAAAACCTATCATGAGTGGTTTTCAAATAAATACTCACTGCTTTTTCTACAACTGTCCGCCGAAAAAATGCATTGCAGGAACGACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGARTTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCTCGGCCGATTTTATATTCCCTAATTTATCAAACAGCACCGACCAAAAATAATTTCAAAAAATATGTAAACCCTGATTTTTAAAAAAGTTGTACCTGCGAATTATATTCGTCTTTCATAATCCGCGCGGATGACGTGGAAGGCGTGGATGATGATAGCGGCGAAATTTTGACGGCTGTGACGGTGTCGTTTCAAGATGTTGTTGTTTCCAGTCGGGGTGTGGTGGATCACAGAAGAAGCGTCGAACACGACGACGAACGGGACCAGACGACGATGGTGATGTGTTGTTTGTCACCACAGAGGCTCTTCGCTTCCTACTAGGTGGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAACTAATTGCTCCATAGTGAA</pcr_primer_p1>
		<pcr_primer_p2>AGATAAAAGATGGTGCCCTAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGATTTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCT</canonical_amplicon>
		<polymorphic_amplicon>ACAACTAATTGCTCCATAGTGAAGACCATCCGCAGGCGCTGAACAGACTTGACATTCCTGCAAAAATATTGARTTTTTTTAATTTTCCAGTTTTTCAGAGACTCATGTCTCCCCAGACATCATCCCACTCAATTCCTAGAATTACTAAAAGTTTTGGGGTCTCGTTATCTATCTTCGTTTATTAGTTATTCATTAAAAAGTGACGAGGTTCTCACGGCCTCTTCCTGTTTAGGGCACCATCTTTTATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33981</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>377527</contig_pos>
        <strand>+</strand>
        <context>ATTATCGAAA[A/G]ACCAGAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATAAATGTCTAGTAAGTTATCAACTAGTAAATCTAGTAAATTATCGAAA</left_flank>
        <right_flank>ACCAGAAAAAGAAGTTAATAAAGTAGGAAAACCGATAATCTGGAAAAAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACAGGTATTAAGATTTTTTCATGCTTTAGTTTTCATGATAATCGAATCAATTGCTTTGTCATCTTTCAACCAACTATGTTAACAAAACACCAAAAAAATTGACGAGGAGAAAATACCAAAAATCTTCAAAAGTCGGAGAAAAACAACTGTACTAGTTATCGCAAGAGTAAAATTACAGTAAGACCTGTGATAGAATCGAACATACACTGACTGATTTGAGCTCAATTATCTCAATTCCTGTGCAAGATATCAAAAAATGGGTTAACTGATAGATTATTTATCTAAATATCACCAAAAGTATATCAGTTGACAGATGTTTCAAGTTTTTGTGGAAACCGAGATAGTTGCGCTCAACTTATAGTCTGGGCTTCTATCAGAGCAAATACCGTAATTGTTTGCCTCTTTCCAGCCAAATCAAATTTCTAGATCTTGTTTTTATGATATTCAAAATAAATGTCTAGTAAGTTATCAACTAGTAAATCTAGTAAATTATCGAAAGACCAGAAAAAGAAGTTAATAAAGTAGGAAAACCGATAATCTGGAAAAAATAACTACCTCACTCAATAATGAAATTATTCTTTGTTCACTTGAGAATTTTTTCGAGGAGCATGGTTTCCTAAAAACCGCTTTGAAATGAAATTATAGCAAATGTGGAACTAGATTAGTTTGAAACAAACATAGAATCGAAAGGTTAACATCACAGAACATAACAACATGGCCACCAGATTACCAATTTCTCAATCTGACCTCCCACTCTCTCGAACGAAAATCTATTAACCTTTCCCGAAGGTTGATGCTCATGAATAACAAATGGGCGAGTTCATGCAACATACACTCGGAGAGCTCTTCCAACACCCACCTTGCTCTCCGGTGTTCTAATTATGATTTCTCACCGACCACTGATTGAAAAGAAAGCTTTTCTAGCGGAAATAATGCATTACAACAGGACACACGCTGATCCCGTACCTGTGCGAGATTGAAAGACGGATAAAGAAGCAG</canonical>
            <polymorphic>TACAGGTATTAAGATTTTTTCATGCTTTAGTTTTCATGATAATCGAATCAATTGCTTTGTCATCTTTCAACCAACTATGTTAACAAAACACCAAAAAAATTGACGAGGAGAAAATACCAAAAATCTTCAAAAGTCGGAGAAAAACAACTGTACTAGTTATCGCAAGAGTAAAATTACAGTAAGACCTGTGATAGAATCGAACATACACTGACTGATTTGAGCTCAATTATCTCAATTCCTGTGCAAGATATCAAAAAATGGGTTAACTGATAGATTATTTATCTAAATATCACCAAAAGTATATCAGTTGACAGATGTTTCAAGTTTTTGTGGAAACCGAGATAGTTGCGCTCAACTTATAGTCTGGGCTTCTATCAGAGCAAATACCGTAATTGTTTGCCTCTTTCCAGCCAAATCAAATTTCTAGATCTTGTTTTTATGATATTCAAAATAAATGTCTAGTAAGTTATCAACTAGTAAATCTAGTAAATTATCGAAARACCAGAAAAAGAAGTTAATAAAGTAGGAAAACCGATAATCTGGAAAAAATAACTACCTCACTCAATAATGAAATTATTCTTTGTTCACTTGAGAATTTTTTCGAGGAGCATGGTTTCCTAAAAACCGCTTTGAAATGAAATTATAGCAAATGTGGAACTAGATTAGTTTGAAACAAACATAGAATCGAAAGGTTAACATCACAGAACATAACAACATGGCCACCAGATTACCAATTTCTCAATCTGACCTCCCACTCTCTCGAACGAAAATCTATTAACCTTTCCCGAAGGTTGATGCTCATGAATAACAAATGGGCGAGTTCATGCAACATACACTCGGAGAGCTCTTCCAACACCCACCTTGCTCTCCGGTGTTCTAATTATGATTTCTCACCGACCACTGATTGAAAAGAAAGCTTTTCTAGCGGAAATAATGCATTACAACAGGACACACGCTGATCCCGTACCTGTGCGAGATTGAAAGACGGATAAAGAAGCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAATTTCTAGATCTTGTTTTTATGA</pcr_primer_p1>
		<pcr_primer_p2>AGTTCCACATTTGCTATAATTTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CAAATTTCTAGATCTTGTTTTTATGATATTCAAAATAAATGTCTAGTAAGTTATCAACTAGTAAATCTAGTAAATTATCGAAAGACCAGAAAAAGAAGTTAATAAAGTAGGAAAACCGATAATCTGGAAAAAATAACTACCTCACTCAATAATGAAATTATTCTTTGTTCACTTGAGAATTTTTTCGAGGAGCATGGTTTCCTAAAAACCGCTTTGAAATGAAATTATAGCAAATGTGGAACT</canonical_amplicon>
		<polymorphic_amplicon>CAAATTTCTAGATCTTGTTTTTATGATATTCAAAATAAATGTCTAGTAAGTTATCAACTAGTAAATCTAGTAAATTATCGAAARACCAGAAAAAGAAGTTAATAAAGTAGGAAAACCGATAATCTGGAAAAAATAACTACCTCACTCAATAATGAAATTATTCTTTGTTCACTTGAGAATTTTTTCGAGGAGCATGGTTTCCTAAAAACCGCTTTGAAATGAAATTATAGCAAATGTGGAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33982</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>377541</contig_pos>
        <strand>+</strand>
        <context>AGAAAAAGAA[C/G]TTAATAAAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAGTTATCAACTAGTAAATCTAGTAAATTATCGAAAGACCAGAAAAAGAA</left_flank>
        <right_flank>TTAATAAAGTAGGAAAACCGATAATCTGGAAAAAATAACTACCTCACTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTCATGCTTTAGTTTTCATGATAATCGAATCAATTGCTTTGTCATCTTTCAACCAACTATGTTAACAAAACACCAAAAAAATTGACGAGGAGAAAATACCAAAAATCTTCAAAAGTCGGAGAAAAACAACTGTACTAGTTATCGCAAGAGTAAAATTACAGTAAGACCTGTGATAGAATCGAACATACACTGACTGATTTGAGCTCAATTATCTCAATTCCTGTGCAAGATATCAAAAAATGGGTTAACTGATAGATTATTTATCTAAATATCACCAAAAGTATATCAGTTGACAGATGTTTCAAGTTTTTGTGGAAACCGAGATAGTTGCGCTCAACTTATAGTCTGGGCTTCTATCAGAGCAAATACCGTAATTGTTTGCCTCTTTCCAGCCAAATCAAATTTCTAGATCTTGTTTTTATGATATTCAAAATAAATGTCTAGTAAGTTATCAACTAGTAAATCTAGTAAATTATCGAAAGACCAGAAAAAGAAGTTAATAAAGTAGGAAAACCGATAATCTGGAAAAAATAACTACCTCACTCAATAATGAAATTATTCTTTGTTCACTTGAGAATTTTTTCGAGGAGCATGGTTTCCTAAAAACCGCTTTGAAATGAAATTATAGCAAATGTGGAACTAGATTAGTTTGAAACAAACATAGAATCGAAAGGTTAACATCACAGAACATAACAACATGGCCACCAGATTACCAATTTCTCAATCTGACCTCCCACTCTCTCGAACGAAAATCTATTAACCTTTCCCGAAGGTTGATGCTCATGAATAACAAATGGGCGAGTTCATGCAACATACACTCGGAGAGCTCTTCCAACACCCACCTTGCTCTCCGGTGTTCTAATTATGATTTCTCACCGACCACTGATTGAAAAGAAAGCTTTTCTAGCGGAAATAATGCATTACAACAGGACACACGCTGATCCCGTACCTGTGCGAGATTGAAAGACGGATAAAGAAGCAGGAACACATATTAAT</canonical>
            <polymorphic>TTTTTTCATGCTTTAGTTTTCATGATAATCGAATCAATTGCTTTGTCATCTTTCAACCAACTATGTTAACAAAACACCAAAAAAATTGACGAGGAGAAAATACCAAAAATCTTCAAAAGTCGGAGAAAAACAACTGTACTAGTTATCGCAAGAGTAAAATTACAGTAAGACCTGTGATAGAATCGAACATACACTGACTGATTTGAGCTCAATTATCTCAATTCCTGTGCAAGATATCAAAAAATGGGTTAACTGATAGATTATTTATCTAAATATCACCAAAAGTATATCAGTTGACAGATGTTTCAAGTTTTTGTGGAAACCGAGATAGTTGCGCTCAACTTATAGTCTGGGCTTCTATCAGAGCAAATACCGTAATTGTTTGCCTCTTTCCAGCCAAATCAAATTTCTAGATCTTGTTTTTATGATATTCAAAATAAATGTCTAGTAAGTTATCAACTAGTAAATCTAGTAAATTATCGAAAGACCAGAAAAAGAASTTAATAAAGTAGGAAAACCGATAATCTGGAAAAAATAACTACCTCACTCAATAATGAAATTATTCTTTGTTCACTTGAGAATTTTTTCGAGGAGCATGGTTTCCTAAAAACCGCTTTGAAATGAAATTATAGCAAATGTGGAACTAGATTAGTTTGAAACAAACATAGAATCGAAAGGTTAACATCACAGAACATAACAACATGGCCACCAGATTACCAATTTCTCAATCTGACCTCCCACTCTCTCGAACGAAAATCTATTAACCTTTCCCGAAGGTTGATGCTCATGAATAACAAATGGGCGAGTTCATGCAACATACACTCGGAGAGCTCTTCCAACACCCACCTTGCTCTCCGGTGTTCTAATTATGATTTCTCACCGACCACTGATTGAAAAGAAAGCTTTTCTAGCGGAAATAATGCATTACAACAGGACACACGCTGATCCCGTACCTGTGCGAGATTGAAAGACGGATAAAGAAGCAGGAACACATATTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAATTTCTAGATCTTGTTTTTATGA</pcr_primer_p1>
		<pcr_primer_p2>AGTTCCACATTTGCTATAATTTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CAAATTTCTAGATCTTGTTTTTATGATATTCAAAATAAATGTCTAGTAAGTTATCAACTAGTAAATCTAGTAAATTATCGAAAGACCAGAAAAAGAAGTTAATAAAGTAGGAAAACCGATAATCTGGAAAAAATAACTACCTCACTCAATAATGAAATTATTCTTTGTTCACTTGAGAATTTTTTCGAGGAGCATGGTTTCCTAAAAACCGCTTTGAAATGAAATTATAGCAAATGTGGAACT</canonical_amplicon>
		<polymorphic_amplicon>CAAATTTCTAGATCTTGTTTTTATGATATTCAAAATAAATGTCTAGTAAGTTATCAACTAGTAAATCTAGTAAATTATCGAAAGACCAGAAAAAGAASTTAATAAAGTAGGAAAACCGATAATCTGGAAAAAATAACTACCTCACTCAATAATGAAATTATTCTTTGTTCACTTGAGAATTTTTTCGAGGAGCATGGTTTCCTAAAAACCGCTTTGAAATGAAATTATAGCAAATGTGGAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33983</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>379754</contig_pos>
        <strand>+</strand>
        <context>AGCGCCGAAC[A/T]TGCAAAAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGTTTTTCGAATTATTGAATTGAAGTTACATACTAAATAAGCGCCGAAC</left_flank>
        <right_flank>TGCAAAAATAGGTTTTTATTGCCAAAAACAGTAATTTTCCAAATTTTACG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCTTTGAATATAAATTGACAAAATTTTAGCTATCAACAAGTATGGATTTCCGATAAAAGTAATAATTCTCAAAACTTTCACGTTACTGTTTTGAAGTATATGGATACAGGGCTGGGATTTTACGCTTACGAATTTTACGGTTTTTACGGATTTCATTTTGAGACAACCGTAAAATTTTACGGATCTCCGTAAAATGGTTTCCGTAAAATTCGTAAAAACCGTAAAATTAGCAAATTGACTGGTTTTAGCAAGCAAAATCTATATTTTTCAAGGTTGGCGCTATTTCAGGTATGTATCTTTGCAAAATTCAAGTCAATAATTTGAAAATTATGCATTGTCACACAGTACCAAAGTTTTTTTAAAAAAGGTCGAAAAATGCTTTTGGAAATTCGATCATCGCTCAGAAGCGGAATTTTGAGATTTTTGGTGATGAAAGTGTGACAATGCATGTTTTTCGAATTATTGAATTGAAGTTACATACTAAATAAGCGCCGAACTTGCAAAAATAGGTTTTTATTGCCAAAAACAGTAATTTTCCAAATTTTACGGTTTTTACGGATTTCGCGGAAATTTACGGTTTTTCAATCCGTAAATTTTACGTTTTACGGATTCCGTAAAAAAAATTTACGCCCAGCCCTGTATGGATAGAGATACAAAACGCCAACCTTCTGAATAAAATAACTACCAAATATGACCAAACAAAGGAATTTTGTTTGACACATGCTTGAACCGAAATGTTTTATTAAAGTCTAATATGTTCGCATCGAATAGAACATTTGTTTACTCTATGAATGTACCCGGGAAAATCAACCTCATTCGTATTATGTCTATTCTTCTCGGAATTTTTTTTCCTTTTTGTCATCTAGGTACAAGATATTTTAATTAAGCTGGAACAAAGTGGTTCTAATAAGAATAGTACACCTAAGACAAACCACAACAAACAGCAGGATTGGTGACCAAAAAGCATATATCCGTATATACAAAAACATATTATCTTA</canonical>
            <polymorphic>TGTCTTTGAATATAAATTGACAAAATTTTAGCTATCAACAAGTATGGATTTCCGATAAAAGTAATAATTCTCAAAACTTTCACGTTACTGTTTTGAAGTATATGGATACAGGGCTGGGATTTTACGCTTACGAATTTTACGGTTTTTACGGATTTCATTTTGAGACAACCGTAAAATTTTACGGATCTCCGTAAAATGGTTTCCGTAAAATTCGTAAAAACCGTAAAATTAGCAAATTGACTGGTTTTAGCAAGCAAAATCTATATTTTTCAAGGTTGGCGCTATTTCAGGTATGTATCTTTGCAAAATTCAAGTCAATAATTTGAAAATTATGCATTGTCACACAGTACCAAAGTTTTTTTAAAAAAGGTCGAAAAATGCTTTTGGAAATTCGATCATCGCTCAGAAGCGGAATTTTGAGATTTTTGGTGATGAAAGTGTGACAATGCATGTTTTTCGAATTATTGAATTGAAGTTACATACTAAATAAGCGCCGAACWTGCAAAAATAGGTTTTTATTGCCAAAAACAGTAATTTTCCAAATTTTACGGTTTTTACGGATTTCGCGGAAATTTACGGTTTTTCAATCCGTAAATTTTACGTTTTACGGATTCCGTAAAAAAAATTTACGCCCAGCCCTGTATGGATAGAGATACAAAACGCCAACCTTCTGAATAAAATAACTACCAAATATGACCAAACAAAGGAATTTTGTTTGACACATGCTTGAACCGAAATGTTTTATTAAAGTCTAATATGTTCGCATCGAATAGAACATTTGTTTACTCTATGAATGTACCCGGGAAAATCAACCTCATTCGTATTATGTCTATTCTTCTCGGAATTTTTTTTCCTTTTTGTCATCTAGGTACAAGATATTTTAATTAAGCTGGAACAAAGTGGTTCTAATAAGAATAGTACACCTAAGACAAACCACAACAAACAGCAGGATTGGTGACCAAAAAGCATATATCCGTATATACAAAAACATATTATCTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATTTTTGGTGATGAAAGTGT</pcr_primer_p1>
		<pcr_primer_p2>GTTGGCGTTTTGTATCTCTATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGATTTTTGGTGATGAAAGTGTGACAATGCATGTTTTTCGAATTATTGAATTGAAGTTACATACTAAATAAGCGCCGAACTTGCAAAAATAGGTTTTTATTGCCAAAAACAGTAATTTTCCAAATTTTACGGTTTTTACGGATTTCGCGGAAATTTACGGTTTTTCAATCCGTAAATTTTACGTTTTACGGATTCCGTAAAAAAAATTTACGCCCAGCCCTGTATGGATAGAGATACAAAACGCCAAC</canonical_amplicon>
		<polymorphic_amplicon>AGATTTTTGGTGATGAAAGTGTGACAATGCATGTTTTTCGAATTATTGAATTGAAGTTACATACTAAATAAGCGCCGAACWTGCAAAAATAGGTTTTTATTGCCAAAAACAGTAATTTTCCAAATTTTACGGTTTTTACGGATTTCGCGGAAATTTACGGTTTTTCAATCCGTAAATTTTACGTTTTACGGATTCCGTAAAAAAAATTTACGCCCAGCCCTGTATGGATAGAGATACAAAACGCCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33984</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>379771</contig_pos>
        <strand>+</strand>
        <context>AATAGGTTTT[C/T]ATTGCCAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAATTGAAGTTACATACTAAATAAGCGCCGAACTTGCAAAAATAGGTTTT</left_flank>
        <right_flank>ATTGCCAAAAACAGTAATTTTCCAAATTTTACGGTTTTTACGGATTTCGC</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACAAAATTTTAGCTATCAACAAGTATGGATTTCCGATAAAAGTAATAATTCTCAAAACTTTCACGTTACTGTTTTGAAGTATATGGATACAGGGCTGGGATTTTACGCTTACGAATTTTACGGTTTTTACGGATTTCATTTTGAGACAACCGTAAAATTTTACGGATCTCCGTAAAATGGTTTCCGTAAAATTCGTAAAAACCGTAAAATTAGCAAATTGACTGGTTTTAGCAAGCAAAATCTATATTTTTCAAGGTTGGCGCTATTTCAGGTATGTATCTTTGCAAAATTCAAGTCAATAATTTGAAAATTATGCATTGTCACACAGTACCAAAGTTTTTTTAAAAAAGGTCGAAAAATGCTTTTGGAAATTCGATCATCGCTCAGAAGCGGAATTTTGAGATTTTTGGTGATGAAAGTGTGACAATGCATGTTTTTCGAATTATTGAATTGAAGTTACATACTAAATAAGCGCCGAACTTGCAAAAATAGGTTTTTATTGCCAAAAACAGTAATTTTCCAAATTTTACGGTTTTTACGGATTTCGCGGAAATTTACGGTTTTTCAATCCGTAAATTTTACGTTTTACGGATTCCGTAAAAAAAATTTACGCCCAGCCCTGTATGGATAGAGATACAAAACGCCAACCTTCTGAATAAAATAACTACCAAATATGACCAAACAAAGGAATTTTGTTTGACACATGCTTGAACCGAAATGTTTTATTAAAGTCTAATATGTTCGCATCGAATAGAACATTTGTTTACTCTATGAATGTACCCGGGAAAATCAACCTCATTCGTATTATGTCTATTCTTCTCGGAATTTTTTTTCCTTTTTGTCATCTAGGTACAAGATATTTTAATTAAGCTGGAACAAAGTGGTTCTAATAAGAATAGTACACCTAAGACAAACCACAACAAACAGCAGGATTGGTGACCAAAAAGCATATATCCGTATATACAAAAACATATTATCTTATTACCATCACAGAAACT</canonical>
            <polymorphic>TGACAAAATTTTAGCTATCAACAAGTATGGATTTCCGATAAAAGTAATAATTCTCAAAACTTTCACGTTACTGTTTTGAAGTATATGGATACAGGGCTGGGATTTTACGCTTACGAATTTTACGGTTTTTACGGATTTCATTTTGAGACAACCGTAAAATTTTACGGATCTCCGTAAAATGGTTTCCGTAAAATTCGTAAAAACCGTAAAATTAGCAAATTGACTGGTTTTAGCAAGCAAAATCTATATTTTTCAAGGTTGGCGCTATTTCAGGTATGTATCTTTGCAAAATTCAAGTCAATAATTTGAAAATTATGCATTGTCACACAGTACCAAAGTTTTTTTAAAAAAGGTCGAAAAATGCTTTTGGAAATTCGATCATCGCTCAGAAGCGGAATTTTGAGATTTTTGGTGATGAAAGTGTGACAATGCATGTTTTTCGAATTATTGAATTGAAGTTACATACTAAATAAGCGCCGAACTTGCAAAAATAGGTTTTYATTGCCAAAAACAGTAATTTTCCAAATTTTACGGTTTTTACGGATTTCGCGGAAATTTACGGTTTTTCAATCCGTAAATTTTACGTTTTACGGATTCCGTAAAAAAAATTTACGCCCAGCCCTGTATGGATAGAGATACAAAACGCCAACCTTCTGAATAAAATAACTACCAAATATGACCAAACAAAGGAATTTTGTTTGACACATGCTTGAACCGAAATGTTTTATTAAAGTCTAATATGTTCGCATCGAATAGAACATTTGTTTACTCTATGAATGTACCCGGGAAAATCAACCTCATTCGTATTATGTCTATTCTTCTCGGAATTTTTTTTCCTTTTTGTCATCTAGGTACAAGATATTTTAATTAAGCTGGAACAAAGTGGTTCTAATAAGAATAGTACACCTAAGACAAACCACAACAAACAGCAGGATTGGTGACCAAAAAGCATATATCCGTATATACAAAAACATATTATCTTATTACCATCACAGAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCGAATTATTGAATTGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTTTGGTCATATTTGGTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCGAATTATTGAATTGAAGTTACATACTAAATAAGCGCCGAACTTGCAAAAATAGGTTTTTATTGCCAAAAACAGTAATTTTCCAAATTTTACGGTTTTTACGGATTTCGCGGAAATTTACGGTTTTTCAATCCGTAAATTTTACGTTTTACGGATTCCGTAAAAAAAATTTACGCCCAGCCCTGTATGGATAGAGATACAAAACGCCAACCTTCTGAATAAAATAACTACCAAATATGACCAAACAA</canonical_amplicon>
		<polymorphic_amplicon>TTTCGAATTATTGAATTGAAGTTACATACTAAATAAGCGCCGAACTTGCAAAAATAGGTTTTYATTGCCAAAAACAGTAATTTTCCAAATTTTACGGTTTTTACGGATTTCGCGGAAATTTACGGTTTTTCAATCCGTAAATTTTACGTTTTACGGATTCCGTAAAAAAAATTTACGCCCAGCCCTGTATGGATAGAGATACAAAACGCCAACCTTCTGAATAAAATAACTACCAAATATGACCAAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33985</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>380079</contig_pos>
        <strand>+</strand>
        <context>TCATTCGTAT[A/T]ATGTCYATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACATTTGTTTACTCTATGAATGTACCCGGGAAAATCAACCTCATTCGTAT</left_flank>
        <right_flank>ATGTCTATTCTTCTCGGAATTTTTTTTCCTTTTTGTCATCTAGGTACAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTATGCATTGTCACACAGTACCAAAGTTTTTTTAAAAAAGGTCGAAAAATGCTTTTGGAAATTCGATCATCGCTCAGAAGCGGAATTTTGAGATTTTTGGTGATGAAAGTGTGACAATGCATGTTTTTCGAATTATTGAATTGAAGTTACATACTAAATAAGCGCCGAACTTGCAAAAATAGGTTTTTATTGCCAAAAACAGTAATTTTCCAAATTTTACGGTTTTTACGGATTTCGCGGAAATTTACGGTTTTTCAATCCGTAAATTTTACGTTTTACGGATTCCGTAAAAAAAATTTACGCCCAGCCCTGTATGGATAGAGATACAAAACGCCAACCTTCTGAATAAAATAACTACCAAATATGACCAAACAAAGGAATTTTGTTTGACACATGCTTGAACCGAAATGTTTTATTAAAGTCTAATATGTTCGCATCGAATAGAACATTTGTTTACTCTATGAATGTACCCGGGAAAATCAACCTCATTCGTATTATGTCTATTCTTCTCGGAATTTTTTTTCCTTTTTGTCATCTAGGTACAAGATATTTTAATTAAGCTGGAACAAAGTGGTTCTAATAAGAATAGTACACCTAAGACAAACCACAACAAACAGCAGGATTGGTGACCAAAAAGCATATATCCGTATATACAAAAACATATTATCTTATTACCATCACAGAAACTAAACTAAAAGAATAGATATAAAAAATGATAATAACTAGACTAAAAAAACGCGATGATGTTATACATACACTTGTTCTTTAGTTCATGCACTATTTTCTCCGCATTTTCTATCGGGGAAAAGTGTCAAAAGGTTCTGCAAATTGTGGCCACTTATGGCCAAGTTCAAGTACACTCGTCTCGTAGGAAATTCTCTCGCTCATTACAAGGGGAGGCTAATTGATGGAAGAATACCGATTCGCCAATCTTCCAAAATGACTGACAAAGTGAGAGACACAATACAAAAAACACGGCGAGAGAAAAGATGATGA</canonical>
            <polymorphic>AAAATTATGCATTGTCACACAGTACCAAAGTTTTTTTAAAAAAGGTCGAAAAATGCTTTTGGAAATTCGATCATCGCTCAGAAGCGGAATTTTGAGATTTTTGGTGATGAAAGTGTGACAATGCATGTTTTTCGAATTATTGAATTGAAGTTACATACTAAATAAGCGCCGAACTTGCAAAAATAGGTTTTTATTGCCAAAAACAGTAATTTTCCAAATTTTACGGTTTTTACGGATTTCGCGGAAATTTACGGTTTTTCAATCCGTAAATTTTACGTTTTACGGATTCCGTAAAAAAAATTTACGCCCAGCCCTGTATGGATAGAGATACAAAACGCCAACCTTCTGAATAAAATAACTACCAAATATGACCAAACAAAGGAATTTTGTTTGACACATGCTTGAACCGAAATGTTTTATTAAAGTCTAATATGTTCGCATCGAATAGAACATTTGTTTACTCTATGAATGTACCCGGGAAAATCAACCTCATTCGTATWATGTCTATTCTTCTCGGAATTTTTTTTCCTTTTTGTCATCTAGGTACAAGATATTTTAATTAAGCTGGAACAAAGTGGTTCTAATAAGAATAGTACACCTAAGACAAACCACAACAAACAGCAGGATTGGTGACCAAAAAGCATATATCCGTATATACAAAAACATATTATCTTATTACCATCACAGAAACTAAACTAAAAGAATAGATATAAAAAATGATAATAACTAGACTAAAAAAACGCGATGATGTTATACATACACTTGTTCTTTAGTTCATGCACTATTTTCTCCGCATTTTCTATCGGGGAAAAGTGTCAAAAGGTTCTGCAAATTGTGGCCACTTATGGCCAAGTTCAAGTACACTCGTCTCGTAGGAAATTCTCTCGCTCATTACAAGGGGAGGCTAATTGATGGAAGAATACCGATTCGCCAATCTTCCAAAATGACTGACAAAGTGAGAGACACAATACAAAAAACACGGCGAGAGAAAAGATGATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATGACCAAACAAAGGAATTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTGGTTTGTCTTAGGTGTACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATATGACCAAACAAAGGAATTTTGTTTGACACATGCTTGAACCGAAATGTTTTATTAAAGTCTAATATGTTCGCATCGAATAGAACATTTGTTTACTCTATGAATGTACCCGGGAAAATCAACCTCATTCGTATTATGTCTATTCTTCTCGGAATTTTTTTTCCTTTTTGTCATCTAGGTACAAGATATTTTAATTAAGCTGGAACAAAGTGGTTCTAATAAGAATAGTACACCTAAGACAAACCACAA</canonical_amplicon>
		<polymorphic_amplicon>AATATGACCAAACAAAGGAATTTTGTTTGACACATGCTTGAACCGAAATGTTTTATTAAAGTCTAATATGTTCGCATCGAATAGAACATTTGTTTACTCTATGAATGTACCCGGGAAAATCAACCTCATTCGTATWATGTCTATTCTTCTCGGAATTTTTTTTCCTTTTTGTCATCTAGGTACAAGATATTTTAATTAAGCTGGAACAAAGTGGTTCTAATAAGAATAGTACACCTAAGACAAACCACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33986</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>380085</contig_pos>
        <strand>+</strand>
        <context>GTATWATGTC[C/T]ATTCTTCTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTACTCTATGAATGTACCCGGGAAAATCAACCTCATTCGTATTATGTC</left_flank>
        <right_flank>ATTCTTCTCGGAATTTTTTTTCCTTTTTGTCATCTAGGTACAAGATATTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCATTGTCACACAGTACCAAAGTTTTTTTAAAAAAGGTCGAAAAATGCTTTTGGAAATTCGATCATCGCTCAGAAGCGGAATTTTGAGATTTTTGGTGATGAAAGTGTGACAATGCATGTTTTTCGAATTATTGAATTGAAGTTACATACTAAATAAGCGCCGAACTTGCAAAAATAGGTTTTTATTGCCAAAAACAGTAATTTTCCAAATTTTACGGTTTTTACGGATTTCGCGGAAATTTACGGTTTTTCAATCCGTAAATTTTACGTTTTACGGATTCCGTAAAAAAAATTTACGCCCAGCCCTGTATGGATAGAGATACAAAACGCCAACCTTCTGAATAAAATAACTACCAAATATGACCAAACAAAGGAATTTTGTTTGACACATGCTTGAACCGAAATGTTTTATTAAAGTCTAATATGTTCGCATCGAATAGAACATTTGTTTACTCTATGAATGTACCCGGGAAAATCAACCTCATTCGTATTATGTCTATTCTTCTCGGAATTTTTTTTCCTTTTTGTCATCTAGGTACAAGATATTTTAATTAAGCTGGAACAAAGTGGTTCTAATAAGAATAGTACACCTAAGACAAACCACAACAAACAGCAGGATTGGTGACCAAAAAGCATATATCCGTATATACAAAAACATATTATCTTATTACCATCACAGAAACTAAACTAAAAGAATAGATATAAAAAATGATAATAACTAGACTAAAAAAACGCGATGATGTTATACATACACTTGTTCTTTAGTTCATGCACTATTTTCTCCGCATTTTCTATCGGGGAAAAGTGTCAAAAGGTTCTGCAAATTGTGGCCACTTATGGCCAAGTTCAAGTACACTCGTCTCGTAGGAAATTCTCTCGCTCATTACAAGGGGAGGCTAATTGATGGAAGAATACCGATTCGCCAATCTTCCAAAATGACTGACAAAGTGAGAGACACAATACAAAAAACACGGCGAGAGAAAAGATGATGATTGAGT</canonical>
            <polymorphic>ATGCATTGTCACACAGTACCAAAGTTTTTTTAAAAAAGGTCGAAAAATGCTTTTGGAAATTCGATCATCGCTCAGAAGCGGAATTTTGAGATTTTTGGTGATGAAAGTGTGACAATGCATGTTTTTCGAATTATTGAATTGAAGTTACATACTAAATAAGCGCCGAACTTGCAAAAATAGGTTTTTATTGCCAAAAACAGTAATTTTCCAAATTTTACGGTTTTTACGGATTTCGCGGAAATTTACGGTTTTTCAATCCGTAAATTTTACGTTTTACGGATTCCGTAAAAAAAATTTACGCCCAGCCCTGTATGGATAGAGATACAAAACGCCAACCTTCTGAATAAAATAACTACCAAATATGACCAAACAAAGGAATTTTGTTTGACACATGCTTGAACCGAAATGTTTTATTAAAGTCTAATATGTTCGCATCGAATAGAACATTTGTTTACTCTATGAATGTACCCGGGAAAATCAACCTCATTCGTATTATGTCYATTCTTCTCGGAATTTTTTTTCCTTTTTGTCATCTAGGTACAAGATATTTTAATTAAGCTGGAACAAAGTGGTTCTAATAAGAATAGTACACCTAAGACAAACCACAACAAACAGCAGGATTGGTGACCAAAAAGCATATATCCGTATATACAAAAACATATTATCTTATTACCATCACAGAAACTAAACTAAAAGAATAGATATAAAAAATGATAATAACTAGACTAAAAAAACGCGATGATGTTATACATACACTTGTTCTTTAGTTCATGCACTATTTTCTCCGCATTTTCTATCGGGGAAAAGTGTCAAAAGGTTCTGCAAATTGTGGCCACTTATGGCCAAGTTCAAGTACACTCGTCTCGTAGGAAATTCTCTCGCTCATTACAAGGGGAGGCTAATTGATGGAAGAATACCGATTCGCCAATCTTCCAAAATGACTGACAAAGTGAGAGACACAATACAAAAAACACGGCGAGAGAAAAGATGATGATTGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATGACCAAACAAAGGAATTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTGGTTTGTCTTAGGTGTACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATATGACCAAACAAAGGAATTTTGTTTGACACATGCTTGAACCGAAATGTTTTATTAAAGTCTAATATGTTCGCATCGAATAGAACATTTGTTTACTCTATGAATGTACCCGGGAAAATCAACCTCATTCGTATTATGTCTATTCTTCTCGGAATTTTTTTTCCTTTTTGTCATCTAGGTACAAGATATTTTAATTAAGCTGGAACAAAGTGGTTCTAATAAGAATAGTACACCTAAGACAAACCACAA</canonical_amplicon>
		<polymorphic_amplicon>AATATGACCAAACAAAGGAATTTTGTTTGACACATGCTTGAACCGAAATGTTTTATTAAAGTCTAATATGTTCGCATCGAATAGAACATTTGTTTACTCTATGAATGTACCCGGGAAAATCAACCTCATTCGTATTATGTCYATTCTTCTCGGAATTTTTTTTCCTTTTTGTCATCTAGGTACAAGATATTTTAATTAAGCTGGAACAAAGTGGTTCTAATAAGAATAGTACACCTAAGACAAACCACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33987</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>380099</contig_pos>
        <strand>+</strand>
        <context>CTTCTCGGAA[C/T]TTTTTTTYCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTACCCGGGAAAATCAACCTCATTCGTATTATGTCTATTCTTCTCGGAA</left_flank>
        <right_flank>TTTTTTTCCTTTTTGTCATCTAGGTACAAGATATTTTAATTAAGCTGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTACCAAAGTTTTTTTAAAAAAGGTCGAAAAATGCTTTTGGAAATTCGATCATCGCTCAGAAGCGGAATTTTGAGATTTTTGGTGATGAAAGTGTGACAATGCATGTTTTTCGAATTATTGAATTGAAGTTACATACTAAATAAGCGCCGAACTTGCAAAAATAGGTTTTTATTGCCAAAAACAGTAATTTTCCAAATTTTACGGTTTTTACGGATTTCGCGGAAATTTACGGTTTTTCAATCCGTAAATTTTACGTTTTACGGATTCCGTAAAAAAAATTTACGCCCAGCCCTGTATGGATAGAGATACAAAACGCCAACCTTCTGAATAAAATAACTACCAAATATGACCAAACAAAGGAATTTTGTTTGACACATGCTTGAACCGAAATGTTTTATTAAAGTCTAATATGTTCGCATCGAATAGAACATTTGTTTACTCTATGAATGTACCCGGGAAAATCAACCTCATTCGTATTATGTCTATTCTTCTCGGAATTTTTTTTCCTTTTTGTCATCTAGGTACAAGATATTTTAATTAAGCTGGAACAAAGTGGTTCTAATAAGAATAGTACACCTAAGACAAACCACAACAAACAGCAGGATTGGTGACCAAAAAGCATATATCCGTATATACAAAAACATATTATCTTATTACCATCACAGAAACTAAACTAAAAGAATAGATATAAAAAATGATAATAACTAGACTAAAAAAACGCGATGATGTTATACATACACTTGTTCTTTAGTTCATGCACTATTTTCTCCGCATTTTCTATCGGGGAAAAGTGTCAAAAGGTTCTGCAAATTGTGGCCACTTATGGCCAAGTTCAAGTACACTCGTCTCGTAGGAAATTCTCTCGCTCATTACAAGGGGAGGCTAATTGATGGAAGAATACCGATTCGCCAATCTTCCAAAATGACTGACAAAGTGAGAGACACAATACAAAAAACACGGCGAGAGAAAAGATGATGATTGAGTAGGAGTCTATATAA</canonical>
            <polymorphic>AGTACCAAAGTTTTTTTAAAAAAGGTCGAAAAATGCTTTTGGAAATTCGATCATCGCTCAGAAGCGGAATTTTGAGATTTTTGGTGATGAAAGTGTGACAATGCATGTTTTTCGAATTATTGAATTGAAGTTACATACTAAATAAGCGCCGAACTTGCAAAAATAGGTTTTTATTGCCAAAAACAGTAATTTTCCAAATTTTACGGTTTTTACGGATTTCGCGGAAATTTACGGTTTTTCAATCCGTAAATTTTACGTTTTACGGATTCCGTAAAAAAAATTTACGCCCAGCCCTGTATGGATAGAGATACAAAACGCCAACCTTCTGAATAAAATAACTACCAAATATGACCAAACAAAGGAATTTTGTTTGACACATGCTTGAACCGAAATGTTTTATTAAAGTCTAATATGTTCGCATCGAATAGAACATTTGTTTACTCTATGAATGTACCCGGGAAAATCAACCTCATTCGTATTATGTCTATTCTTCTCGGAAYTTTTTTTCCTTTTTGTCATCTAGGTACAAGATATTTTAATTAAGCTGGAACAAAGTGGTTCTAATAAGAATAGTACACCTAAGACAAACCACAACAAACAGCAGGATTGGTGACCAAAAAGCATATATCCGTATATACAAAAACATATTATCTTATTACCATCACAGAAACTAAACTAAAAGAATAGATATAAAAAATGATAATAACTAGACTAAAAAAACGCGATGATGTTATACATACACTTGTTCTTTAGTTCATGCACTATTTTCTCCGCATTTTCTATCGGGGAAAAGTGTCAAAAGGTTCTGCAAATTGTGGCCACTTATGGCCAAGTTCAAGTACACTCGTCTCGTAGGAAATTCTCTCGCTCATTACAAGGGGAGGCTAATTGATGGAAGAATACCGATTCGCCAATCTTCCAAAATGACTGACAAAGTGAGAGACACAATACAAAAAACACGGCGAGAGAAAAGATGATGATTGAGTAGGAGTCTATATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>360 143 135 129 84 43 30 29 24 23</canonical_bands>
                <polymorphic_bands>495 143 129 84 43 30 29 24 23</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>273 135 114 84 65 47 47 43 40 30 29 29 24 23 9 8</canonical_bands>
                <polymorphic_bands>273 175 114 84 65 47 47 43 30 29 29 24 23 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATATGACCAAACAAAGGAATTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTGGTTTGTCTTAGGTGTACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATATGACCAAACAAAGGAATTTTGTTTGACACATGCTTGAACCGAAATGTTTTATTAAAGTCTAATATGTTCGCATCGAATAGAACATTTGTTTACTCTATGAATGTACCCGGGAAAATCAACCTCATTCGTATTATGTCTATTCTTCTCGGAATTTTTTTTCCTTTTTGTCATCTAGGTACAAGATATTTTAATTAAGCTGGAACAAAGTGGTTCTAATAAGAATAGTACACCTAAGACAAACCACAA</canonical_amplicon>
		<polymorphic_amplicon>AATATGACCAAACAAAGGAATTTTGTTTGACACATGCTTGAACCGAAATGTTTTATTAAAGTCTAATATGTTCGCATCGAATAGAACATTTGTTTACTCTATGAATGTACCCGGGAAAATCAACCTCATTCGTATTATGTCTATTCTTCTCGGAAYTTTTTTTCCTTTTTGTCATCTAGGTACAAGATATTTTAATTAAGCTGGAACAAAGTGGTTCTAATAAGAATAGTACACCTAAGACAAACCACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33988</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>380107</contig_pos>
        <strand></strand>
        <context>AAYTTTTTTT[C/T]CTTTTTGTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAAAATCAACCTCATTCGTATTATGTCTATTCTTCTCGGAATTTTTTTT</left_flank>
        <right_flank>CTTTTTGTCATCTAGGTACAAGATATTTTAATTAAGCTGGAACAAAGTGG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTTTTTTAAAAAAGGTCGAAAAATGCTTTTGGAAATTCGATCATCGCTCAGAAGCGGAATTTTGAGATTTTTGGTGATGAAAGTGTGACAATGCATGTTTTTCGAATTATTGAATTGAAGTTACATACTAAATAAGCGCCGAACTTGCAAAAATAGGTTTTTATTGCCAAAAACAGTAATTTTCCAAATTTTACGGTTTTTACGGATTTCGCGGAAATTTACGGTTTTTCAATCCGTAAATTTTACGTTTTACGGATTCCGTAAAAAAAATTTACGCCCAGCCCTGTATGGATAGAGATACAAAACGCCAACCTTCTGAATAAAATAACTACCAAATATGACCAAACAAAGGAATTTTGTTTGACACATGCTTGAACCGAAATGTTTTATTAAAGTCTAATATGTTCGCATCGAATAGAACATTTGTTTACTCTATGAATGTACCCGGGAAAATCAACCTCATTCGTATTATGTCTATTCTTCTCGGAATTTTTTTTCCTTTTTGTCATCTAGGTACAAGATATTTTAATTAAGCTGGAACAAAGTGGTTCTAATAAGAATAGTACACCTAAGACAAACCACAACAAACAGCAGGATTGGTGACCAAAAAGCATATATCCGTATATACAAAAACATATTATCTTATTACCATCACAGAAACTAAACTAAAAGAATAGATATAAAAAATGATAATAACTAGACTAAAAAAACGCGATGATGTTATACATACACTTGTTCTTTAGTTCATGCACTATTTTCTCCGCATTTTCTATCGGGGAAAAGTGTCAAAAGGTTCTGCAAATTGTGGCCACTTATGGCCAAGTTCAAGTACACTCGTCTCGTAGGAAATTCTCTCGCTCATTACAAGGGGAGGCTAATTGATGGAAGAATACCGATTCGCCAATCTTCCAAAATGACTGACAAAGTGAGAGACACAATACAAAAAACACGGCGAGAGAAAAGATGATGATTGAGTAGGAGTCTATATAAGTCGAATT</canonical>
            <polymorphic>AGTTTTTTTAAAAAAGGTCGAAAAATGCTTTTGGAAATTCGATCATCGCTCAGAAGCGGAATTTTGAGATTTTTGGTGATGAAAGTGTGACAATGCATGTTTTTCGAATTATTGAATTGAAGTTACATACTAAATAAGCGCCGAACTTGCAAAAATAGGTTTTTATTGCCAAAAACAGTAATTTTCCAAATTTTACGGTTTTTACGGATTTCGCGGAAATTTACGGTTTTTCAATCCGTAAATTTTACGTTTTACGGATTCCGTAAAAAAAATTTACGCCCAGCCCTGTATGGATAGAGATACAAAACGCCAACCTTCTGAATAAAATAACTACCAAATATGACCAAACAAAGGAATTTTGTTTGACACATGCTTGAACCGAAATGTTTTATTAAAGTCTAATATGTTCGCATCGAATAGAACATTTGTTTACTCTATGAATGTACCCGGGAAAATCAACCTCATTCGTATTATGTCTATTCTTCTCGGAATTTTTTTTYCTTTTTGTCATCTAGGTACAAGATATTTTAATTAAGCTGGAACAAAGTGGTTCTAATAAGAATAGTACACCTAAGACAAACCACAACAAACAGCAGGATTGGTGACCAAAAAGCATATATCCGTATATACAAAAACATATTATCTTATTACCATCACAGAAACTAAACTAAAAGAATAGATATAAAAAATGATAATAACTAGACTAAAAAAACGCGATGATGTTATACATACACTTGTTCTTTAGTTCATGCACTATTTTCTCCGCATTTTCTATCGGGGAAAAGTGTCAAAAGGTTCTGCAAATTGTGGCCACTTATGGCCAAGTTCAAGTACACTCGTCTCGTAGGAAATTCTCTCGCTCATTACAAGGGGAGGCTAATTGATGGAAGAATACCGATTCGCCAATCTTCCAAAATGACTGACAAAGTGAGAGACACAATACAAAAAACACGGCGAGAGAAAAGATGATGATTGAGTAGGAGTCTATATAAGTCGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATGACCAAACAAAGGAATTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTGGTTTGTCTTAGGTGTACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATATGACCAAACAAAGGAATTTTGTTTGACACATGCTTGAACCGAAATGTTTTATTAAAGTCTAATATGTTCGCATCGAATAGAACATTTGTTTACTCTATGAATGTACCCGGGAAAATCAACCTCATTCGTATTATGTCTATTCTTCTCGGAATTTTTTTTCCTTTTTGTCATCTAGGTACAAGATATTTTAATTAAGCTGGAACAAAGTGGTTCTAATAAGAATAGTACACCTAAGACAAACCACAA</canonical_amplicon>
		<polymorphic_amplicon>AATATGACCAAACAAAGGAATTTTGTTTGACACATGCTTGAACCGAAATGTTTTATTAAAGTCTAATATGTTCGCATCGAATAGAACATTTGTTTACTCTATGAATGTACCCGGGAAAATCAACCTCATTCGTATTATGTCTATTCTTCTCGGAATTTTTTTTYCTTTTTGTCATCTAGGTACAAGATATTTTAATTAAGCTGGAACAAAGTGGTTCTAATAAGAATAGTACACCTAAGACAAACCACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33989</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>380209</contig_pos>
        <strand>+</strand>
        <context>AGCAGGATTG[A/G]TGACCAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTAATAAGAATAGTACACCTAAGACAAACCACAACAAACAGCAGGATTG</left_flank>
        <right_flank>TGACCAAAAAGCATATATCCGTATATACAAAAACATATTATCTTATTACC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGAATTATTGAATTGAAGTTACATACTAAATAAGCGCCGAACTTGCAAAAATAGGTTTTTATTGCCAAAAACAGTAATTTTCCAAATTTTACGGTTTTTACGGATTTCGCGGAAATTTACGGTTTTTCAATCCGTAAATTTTACGTTTTACGGATTCCGTAAAAAAAATTTACGCCCAGCCCTGTATGGATAGAGATACAAAACGCCAACCTTCTGAATAAAATAACTACCAAATATGACCAAACAAAGGAATTTTGTTTGACACATGCTTGAACCGAAATGTTTTATTAAAGTCTAATATGTTCGCATCGAATAGAACATTTGTTTACTCTATGAATGTACCCGGGAAAATCAACCTCATTCGTATTATGTCTATTCTTCTCGGAATTTTTTTTCCTTTTTGTCATCTAGGTACAAGATATTTTAATTAAGCTGGAACAAAGTGGTTCTAATAAGAATAGTACACCTAAGACAAACCACAACAAACAGCAGGATTGGTGACCAAAAAGCATATATCCGTATATACAAAAACATATTATCTTATTACCATCACAGAAACTAAACTAAAAGAATAGATATAAAAAATGATAATAACTAGACTAAAAAAACGCGATGATGTTATACATACACTTGTTCTTTAGTTCATGCACTATTTTCTCCGCATTTTCTATCGGGGAAAAGTGTCAAAAGGTTCTGCAAATTGTGGCCACTTATGGCCAAGTTCAAGTACACTCGTCTCGTAGGAAATTCTCTCGCTCATTACAAGGGGAGGCTAATTGATGGAAGAATACCGATTCGCCAATCTTCCAAAATGACTGACAAAGTGAGAGACACAATACAAAAAACACGGCGAGAGAAAAGATGATGATTGAGTAGGAGTCTATATAAGTCGAATTCATTTTTTTTCTTTCATTCACAAATGACCAATGTACTTGATGTGGCAAAAAGAAGACTGATAGATGCAATGCAAGTGCGCTCTTTTGCAAACGCCACGACAA</canonical>
            <polymorphic>TTCGAATTATTGAATTGAAGTTACATACTAAATAAGCGCCGAACTTGCAAAAATAGGTTTTTATTGCCAAAAACAGTAATTTTCCAAATTTTACGGTTTTTACGGATTTCGCGGAAATTTACGGTTTTTCAATCCGTAAATTTTACGTTTTACGGATTCCGTAAAAAAAATTTACGCCCAGCCCTGTATGGATAGAGATACAAAACGCCAACCTTCTGAATAAAATAACTACCAAATATGACCAAACAAAGGAATTTTGTTTGACACATGCTTGAACCGAAATGTTTTATTAAAGTCTAATATGTTCGCATCGAATAGAACATTTGTTTACTCTATGAATGTACCCGGGAAAATCAACCTCATTCGTATTATGTCTATTCTTCTCGGAATTTTTTTTCCTTTTTGTCATCTAGGTACAAGATATTTTAATTAAGCTGGAACAAAGTGGTTCTAATAAGAATAGTACACCTAAGACAAACCACAACAAACAGCAGGATTGRTGACCAAAAAGCATATATCCGTATATACAAAAACATATTATCTTATTACCATCACAGAAACTAAACTAAAAGAATAGATATAAAAAATGATAATAACTAGACTAAAAAAACGCGATGATGTTATACATACACTTGTTCTTTAGTTCATGCACTATTTTCTCCGCATTTTCTATCGGGGAAAAGTGTCAAAAGGTTCTGCAAATTGTGGCCACTTATGGCCAAGTTCAAGTACACTCGTCTCGTAGGAAATTCTCTCGCTCATTACAAGGGGAGGCTAATTGATGGAAGAATACCGATTCGCCAATCTTCCAAAATGACTGACAAAGTGAGAGACACAATACAAAAAACACGGCGAGAGAAAAGATGATGATTGAGTAGGAGTCTATATAAGTCGAATTCATTTTTTTTCTTTCATTCACAAATGACCAATGTACTTGATGTGGCAAAAAGAAGACTGATAGATGCAATGCAAGTGCGCTCTTTTGCAAACGCCACGACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGTNACC</site>
                <isoschizomers>
                    <enzyme>BstEII</enzyme>
                    <enzyme>BstPI</enzyme>
                    <enzyme>Eco91I</enzyme>
                    <enzyme>EcoO65I</enzyme>
                    <enzyme>PspEI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>266 181 95 77 69 52 34 33 24 22 22 21 20 20 19 14 14 7 6 4</canonical_bands>
                <polymorphic_bands>266 181 95 77 73 69 34 33 24 22 22 20 20 19 14 14 7 6 4</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 480 19</canonical_bands>
                <polymorphic_bands>981 19</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAATTAAGCTGGAACAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>ATAGAAAATGCGGAGAAAATAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTAATTAAGCTGGAACAAAGTGGTTCTAATAAGAATAGTACACCTAAGACAAACCACAACAAACAGCAGGATTGGTGACCAAAAAGCATATATCCGTATATACAAAAACATATTATCTTATTACCATCACAGAAACTAAACTAAAAGAATAGATATAAAAAATGATAATAACTAGACTAAAAAAACGCGATGATGTTATACATACACTTGTTCTTTAGTTCATGCACTATTTTCTCCGCATTTTCTAT</canonical_amplicon>
		<polymorphic_amplicon>TTTAATTAAGCTGGAACAAAGTGGTTCTAATAAGAATAGTACACCTAAGACAAACCACAACAAACAGCAGGATTGRTGACCAAAAAGCATATATCCGTATATACAAAAACATATTATCTTATTACCATCACAGAAACTAAACTAAAAGAATAGATATAAAAAATGATAATAACTAGACTAAAAAAACGCGATGATGTTATACATACACTTGTTCTTTAGTTCATGCACTATTTTCTCCGCATTTTCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33990</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>380229</contig_pos>
        <strand>+</strand>
        <context>AGCATATATC[C/T]GTATATACAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAGACAAACCACAACAAACAGCAGGATTGGTGACCAAAAAGCATATATC</left_flank>
        <right_flank>GTATATACAAAAACATATTATCTTATTACCATCACAGAAACTAAACTAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTACATACTAAATAAGCGCCGAACTTGCAAAAATAGGTTTTTATTGCCAAAAACAGTAATTTTCCAAATTTTACGGTTTTTACGGATTTCGCGGAAATTTACGGTTTTTCAATCCGTAAATTTTACGTTTTACGGATTCCGTAAAAAAAATTTACGCCCAGCCCTGTATGGATAGAGATACAAAACGCCAACCTTCTGAATAAAATAACTACCAAATATGACCAAACAAAGGAATTTTGTTTGACACATGCTTGAACCGAAATGTTTTATTAAAGTCTAATATGTTCGCATCGAATAGAACATTTGTTTACTCTATGAATGTACCCGGGAAAATCAACCTCATTCGTATTATGTCTATTCTTCTCGGAATTTTTTTTCCTTTTTGTCATCTAGGTACAAGATATTTTAATTAAGCTGGAACAAAGTGGTTCTAATAAGAATAGTACACCTAAGACAAACCACAACAAACAGCAGGATTGGTGACCAAAAAGCATATATCCGTATATACAAAAACATATTATCTTATTACCATCACAGAAACTAAACTAAAAGAATAGATATAAAAAATGATAATAACTAGACTAAAAAAACGCGATGATGTTATACATACACTTGTTCTTTAGTTCATGCACTATTTTCTCCGCATTTTCTATCGGGGAAAAGTGTCAAAAGGTTCTGCAAATTGTGGCCACTTATGGCCAAGTTCAAGTACACTCGTCTCGTAGGAAATTCTCTCGCTCATTACAAGGGGAGGCTAATTGATGGAAGAATACCGATTCGCCAATCTTCCAAAATGACTGACAAAGTGAGAGACACAATACAAAAAACACGGCGAGAGAAAAGATGATGATTGAGTAGGAGTCTATATAAGTCGAATTCATTTTTTTTCTTTCATTCACAAATGACCAATGTACTTGATGTGGCAAAAAGAAGACTGATAGATGCAATGCAAGTGCGCTCTTTTGCAAACGCCACGACAAAATGAATTTTTAATAGAGCA</canonical>
            <polymorphic>TTACATACTAAATAAGCGCCGAACTTGCAAAAATAGGTTTTTATTGCCAAAAACAGTAATTTTCCAAATTTTACGGTTTTTACGGATTTCGCGGAAATTTACGGTTTTTCAATCCGTAAATTTTACGTTTTACGGATTCCGTAAAAAAAATTTACGCCCAGCCCTGTATGGATAGAGATACAAAACGCCAACCTTCTGAATAAAATAACTACCAAATATGACCAAACAAAGGAATTTTGTTTGACACATGCTTGAACCGAAATGTTTTATTAAAGTCTAATATGTTCGCATCGAATAGAACATTTGTTTACTCTATGAATGTACCCGGGAAAATCAACCTCATTCGTATTATGTCTATTCTTCTCGGAATTTTTTTTCCTTTTTGTCATCTAGGTACAAGATATTTTAATTAAGCTGGAACAAAGTGGTTCTAATAAGAATAGTACACCTAAGACAAACCACAACAAACAGCAGGATTGGTGACCAAAAAGCATATATCYGTATATACAAAAACATATTATCTTATTACCATCACAGAAACTAAACTAAAAGAATAGATATAAAAAATGATAATAACTAGACTAAAAAAACGCGATGATGTTATACATACACTTGTTCTTTAGTTCATGCACTATTTTCTCCGCATTTTCTATCGGGGAAAAGTGTCAAAAGGTTCTGCAAATTGTGGCCACTTATGGCCAAGTTCAAGTACACTCGTCTCGTAGGAAATTCTCTCGCTCATTACAAGGGGAGGCTAATTGATGGAAGAATACCGATTCGCCAATCTTCCAAAATGACTGACAAAGTGAGAGACACAATACAAAAAACACGGCGAGAGAAAAGATGATGATTGAGTAGGAGTCTATATAAGTCGAATTCATTTTTTTTCTTTCATTCACAAATGACCAATGTACTTGATGTGGCAAAAAGAAGACTGATAGATGCAATGCAAGTGCGCTCTTTTGCAAACGCCACGACAAAATGAATTTTTAATAGAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAATTAAGCTGGAACAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>ATAGAAAATGCGGAGAAAATAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTAATTAAGCTGGAACAAAGTGGTTCTAATAAGAATAGTACACCTAAGACAAACCACAACAAACAGCAGGATTGGTGACCAAAAAGCATATATCCGTATATACAAAAACATATTATCTTATTACCATCACAGAAACTAAACTAAAAGAATAGATATAAAAAATGATAATAACTAGACTAAAAAAACGCGATGATGTTATACATACACTTGTTCTTTAGTTCATGCACTATTTTCTCCGCATTTTCTAT</canonical_amplicon>
		<polymorphic_amplicon>TTTAATTAAGCTGGAACAAAGTGGTTCTAATAAGAATAGTACACCTAAGACAAACCACAACAAACAGCAGGATTGGTGACCAAAAAGCATATATCYGTATATACAAAAACATATTATCTTATTACCATCACAGAAACTAAACTAAAAGAATAGATATAAAAAATGATAATAACTAGACTAAAAAAACGCGATGATGTTATACATACACTTGTTCTTTAGTTCATGCACTATTTTCTCCGCATTTTCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33991</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>394200</contig_pos>
        <strand>+</strand>
        <context>ATTCTTGGTG[C/T]AAAACGAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTG</left_flank>
        <right_flank>AAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATAGAGCCAAAAAATGTTTCTCAGATCTCAATATAATGAATAGCGAAAACACATAAAGAACGAAAACAAGCTTGAATATTTTCAGACTTCACCTAGACATTAACAAACGTTCCTATAATCATGTGCCCGGGGAATGTGGTATTATACCGAACTTACCTGGAATTTTGTCACTAACTACTTCAACTGGGGGCCGTCTTTATATGACAACTGTGAGTTCTGTTCATTTTTTCTGTTCTGTTTTTTATGTTAGATTTCTTTGGTTGGGATTTCCTCATTTTTGTAAACACCCGTTCCTTTTTTGAGTCATTTAATTAAAACACGCAAGAAAAACTTATTAATTTGGAATTATTTTGCTTTCAGCTGGAAAAAATAGCTAGAACAAAATGGCTTGGTGTGTTTTTTTTTCAGAGAACAATTAATTGAAAAAAATAAAGTCATAATATTGGCTGTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGCAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGACTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGA</canonical>
            <polymorphic>TATAGAGCCAAAAAATGTTTCTCAGATCTCAATATAATGAATAGCGAAAACACATAAAGAACGAAAACAAGCTTGAATATTTTCAGACTTCACCTAGACATTAACAAACGTTCCTATAATCATGTGCCCGGGGAATGTGGTATTATACCGAACTTACCTGGAATTTTGTCACTAACTACTTCAACTGGGGGCCGTCTTTATATGACAACTGTGAGTTCTGTTCATTTTTTCTGTTCTGTTTTTTATGTTAGATTTCTTTGGTTGGGATTTCCTCATTTTTGTAAACACCCGTTCCTTTTTTGAGTCATTTAATTAAAACACGCAAGAAAAACTTATTAATTTGGAATTATTTTGCTTTCAGCTGGAAAAAATAGCTAGAACAAAATGGCTTGGTGTGTTTTTTTTTCAGAGAACAATTAATTGAAAAAAATAAAGTCATAATATTGGCTGTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGYAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGACTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>499 376 84 41</canonical_bands>
                <polymorphic_bands>540 376 84</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGTCATAATATTGGCTGTTAAA</pcr_primer_p1>
		<pcr_primer_p2>CGTGTTGTCAGATATACCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAGTCATAATATTGGCTGTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGCAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGACTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACG</canonical_amplicon>
		<polymorphic_amplicon>AAAGTCATAATATTGGCTGTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGYAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGACTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33992</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>394267</contig_pos>
        <strand>+</strand>
        <context>TCTCGAGAGA[C/T]TTCACTTAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGA</left_flank>
        <right_flank>TTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGCTTGAATATTTTCAGACTTCACCTAGACATTAACAAACGTTCCTATAATCATGTGCCCGGGGAATGTGGTATTATACCGAACTTACCTGGAATTTTGTCACTAACTACTTCAACTGGGGGCCGTCTTTATATGACAACTGTGAGTTCTGTTCATTTTTTCTGTTCTGTTTTTTATGTTAGATTTCTTTGGTTGGGATTTCCTCATTTTTGTAAACACCCGTTCCTTTTTTGAGTCATTTAATTAAAACACGCAAGAAAAACTTATTAATTTGGAATTATTTTGCTTTCAGCTGGAAAAAATAGCTAGAACAAAATGGCTTGGTGTGTTTTTTTTTCAGAGAACAATTAATTGAAAAAAATAAAGTCATAATATTGGCTGTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGCAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGACTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGT</canonical>
            <polymorphic>CAAGCTTGAATATTTTCAGACTTCACCTAGACATTAACAAACGTTCCTATAATCATGTGCCCGGGGAATGTGGTATTATACCGAACTTACCTGGAATTTTGTCACTAACTACTTCAACTGGGGGCCGTCTTTATATGACAACTGTGAGTTCTGTTCATTTTTTCTGTTCTGTTTTTTATGTTAGATTTCTTTGGTTGGGATTTCCTCATTTTTGTAAACACCCGTTCCTTTTTTGAGTCATTTAATTAAAACACGCAAGAAAAACTTATTAATTTGGAATTATTTTGCTTTCAGCTGGAAAAAATAGCTAGAACAAAATGGCTTGGTGTGTTTTTTTTTCAGAGAACAATTAATTGAAAAAAATAAAGTCATAATATTGGCTGTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGCAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGAYTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGTCATAATATTGGCTGTTAAA</pcr_primer_p1>
		<pcr_primer_p2>CGTGTTGTCAGATATACCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAGTCATAATATTGGCTGTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGCAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGACTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACG</canonical_amplicon>
		<polymorphic_amplicon>AAAGTCATAATATTGGCTGTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGCAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGAYTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33993</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>394433</contig_pos>
        <strand>+</strand>
        <context>GAAATTCGAG[A/G]AGCCCCGCCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAG</left_flank>
        <right_flank>AGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGTTTTTTATGTTAGATTTCTTTGGTTGGGATTTCCTCATTTTTGTAAACACCCGTTCCTTTTTTGAGTCATTTAATTAAAACACGCAAGAAAAACTTATTAATTTGGAATTATTTTGCTTTCAGCTGGAAAAAATAGCTAGAACAAAATGGCTTGGTGTGTTTTTTTTTCAGAGAACAATTAATTGAAAAAAATAAAGTCATAATATTGGCTGTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGCAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGACTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGA</canonical>
            <polymorphic>TTCTGTTTTTTATGTTAGATTTCTTTGGTTGGGATTTCCTCATTTTTGTAAACACCCGTTCCTTTTTTGAGTCATTTAATTAAAACACGCAAGAAAAACTTATTAATTTGGAATTATTTTGCTTTCAGCTGGAAAAAATAGCTAGAACAAAATGGCTTGGTGTGTTTTTTTTTCAGAGAACAATTAATTGAAAAAAATAAAGTCATAATATTGGCTGTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGCAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGACTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGRAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>501 234 192 44 29</canonical_bands>
                <polymorphic_bands>530 234 192 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATCTGACAACACGCATATCTT</pcr_primer_p1>
		<pcr_primer_p2>CGACAATATTATTTGTGGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCG</canonical_amplicon>
		<polymorphic_amplicon>ATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGRAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33994</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>394502</contig_pos>
        <strand>+</strand>
        <context>AACGTGAGTC[A/G]AAGGATCCCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTC</left_flank>
        <right_flank>AAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCATTTAATTAAAACACGCAAGAAAAACTTATTAATTTGGAATTATTTTGCTTTCAGCTGGAAAAAATAGCTAGAACAAAATGGCTTGGTGTGTTTTTTTTTCAGAGAACAATTAATTGAAAAAAATAAAGTCATAATATTGGCTGTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGCAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGACTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTT</canonical>
            <polymorphic>AGTCATTTAATTAAAACACGCAAGAAAAACTTATTAATTTGGAATTATTTTGCTTTCAGCTGGAAAAAATAGCTAGAACAAAATGGCTTGGTGTGTTTTTTTTTCAGAGAACAATTAATTGAAAAAAATAAAGTCATAATATTGGCTGTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGCAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGACTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCRAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATCTGACAACACGCATATCTT</pcr_primer_p1>
		<pcr_primer_p2>CGACAATATTATTTGTGGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCG</canonical_amplicon>
		<polymorphic_amplicon>ATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCRAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33995</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>394518</contig_pos>
        <strand>+</strand>
        <context>TCCCCAAAAC[A/G]AATTCCYSTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAAC</left_flank>
        <right_flank>AATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACGCAAGAAAAACTTATTAATTTGGAATTATTTTGCTTTCAGCTGGAAAAAATAGCTAGAACAAAATGGCTTGGTGTGTTTTTTTTTCAGAGAACAATTAATTGAAAAAAATAAAGTCATAATATTGGCTGTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGCAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGACTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTG</canonical>
            <polymorphic>CACGCAAGAAAAACTTATTAATTTGGAATTATTTTGCTTTCAGCTGGAAAAAATAGCTAGAACAAAATGGCTTGGTGTGTTTTTTTTTCAGAGAACAATTAATTGAAAAAAATAAAGTCATAATATTGGCTGTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGCAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGACTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACRAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>183 162 158 128 114 94 77 45 27 12</canonical_bands>
                <polymorphic_bands>208 183 162 158 128 77 45 27 12</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>500 329 171</canonical_bands>
                <polymorphic_bands>671 329</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATCTGACAACACGCATATCTT</pcr_primer_p1>
		<pcr_primer_p2>CGACAATATTATTTGTGGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCG</canonical_amplicon>
		<polymorphic_amplicon>ATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACRAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33996</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>394525</contig_pos>
        <strand>+</strand>
        <context>AACRAATTCC[C/T]STTKWYWAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCC</left_flank>
        <right_flank>TTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAACTTATTAATTTGGAATTATTTTGCTTTCAGCTGGAAAAAATAGCTAGAACAAAATGGCTTGGTGTGTTTTTTTTTCAGAGAACAATTAATTGAAAAAAATAAAGTCATAATATTGGCTGTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGCAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGACTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACA</canonical>
            <polymorphic>GAAAAACTTATTAATTTGGAATTATTTTGCTTTCAGCTGGAAAAAATAGCTAGAACAAAATGGCTTGGTGTGTTTTTTTTTCAGAGAACAATTAATTGAAAAAAATAAAGTCATAATATTGGCTGTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGCAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGACTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCYTTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATCTGACAACACGCATATCTT</pcr_primer_p1>
		<pcr_primer_p2>CGACAATATTATTTGTGGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCG</canonical_amplicon>
		<polymorphic_amplicon>ATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCYTTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33997</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>394526</contig_pos>
        <strand>+</strand>
        <context>ACRAATTCCY[C/G]TTKWYWAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCA</left_flank>
        <right_flank>TTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAACTTATTAATTTGGAATTATTTTGCTTTCAGCTGGAAAAAATAGCTAGAACAAAATGGCTTGGTGTGTTTTTTTTTCAGAGAACAATTAATTGAAAAAAATAAAGTCATAATATTGGCTGTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGCAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGACTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACAT</canonical>
            <polymorphic>AAAAACTTATTAATTTGGAATTATTTTGCTTTCAGCTGGAAAAAATAGCTAGAACAAAATGGCTTGGTGTGTTTTTTTTTCAGAGAACAATTAATTGAAAAAAATAAAGTCATAATATTGGCTGTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGCAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGACTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCASTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATCTGACAACACGCATATCTT</pcr_primer_p1>
		<pcr_primer_p2>CGACAATATTATTTGTGGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCG</canonical_amplicon>
		<polymorphic_amplicon>ATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCASTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33998</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>394529</contig_pos>
        <strand>+</strand>
        <context>AATTCCYSTT[G/T]WYWAATTGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTT</left_flank>
        <right_flank>AATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTTATTAATTTGGAATTATTTTGCTTTCAGCTGGAAAAAATAGCTAGAACAAAATGGCTTGGTGTGTTTTTTTTTCAGAGAACAATTAATTGAAAAAAATAAAGTCATAATATTGGCTGTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGCAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGACTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTG</canonical>
            <polymorphic>AACTTATTAATTTGGAATTATTTTGCTTTCAGCTGGAAAAAATAGCTAGAACAAAATGGCTTGGTGTGTTTTTTTTTCAGAGAACAATTAATTGAAAAAAATAAAGTCATAATATTGGCTGTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGCAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGACTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTKAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATCTGACAACACGCATATCTT</pcr_primer_p1>
		<pcr_primer_p2>CGACAATATTATTTGTGGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCG</canonical_amplicon>
		<polymorphic_amplicon>ATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTKAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb33999</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>394530</contig_pos>
        <strand>+</strand>
        <context>ATTCCYSTTK[A/T]YWAATTGATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTC</left_flank>
        <right_flank>ATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTATTAATTTGGAATTATTTTGCTTTCAGCTGGAAAAAATAGCTAGAACAAAATGGCTTGGTGTGTTTTTTTTTCAGAGAACAATTAATTGAAAAAAATAAAGTCATAATATTGGCTGTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGCAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGACTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGA</canonical>
            <polymorphic>ACTTATTAATTTGGAATTATTTTGCTTTCAGCTGGAAAAAATAGCTAGAACAAAATGGCTTGGTGTGTTTTTTTTTCAGAGAACAATTAATTGAAAAAAATAAAGTCATAATATTGGCTGTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGCAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGACTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCWATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATCTGACAACACGCATATCTT</pcr_primer_p1>
		<pcr_primer_p2>CGACAATATTATTTGTGGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCG</canonical_amplicon>
		<polymorphic_amplicon>ATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCWATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34000</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>394531</contig_pos>
        <strand>+</strand>
        <context>TTCCYSTTKW[C/T]WAATTGATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCA</left_flank>
        <right_flank>TAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTATTAATTTGGAATTATTTTGCTTTCAGCTGGAAAAAATAGCTAGAACAAAATGGCTTGGTGTGTTTTTTTTTCAGAGAACAATTAATTGAAAAAAATAAAGTCATAATATTGGCTGTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGCAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGACTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGAC</canonical>
            <polymorphic>CTTATTAATTTGGAATTATTTTGCTTTCAGCTGGAAAAAATAGCTAGAACAAAATGGCTTGGTGTGTTTTTTTTTCAGAGAACAATTAATTGAAAAAAATAAAGTCATAATATTGGCTGTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGCAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGACTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAYTAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATCTGACAACACGCATATCTT</pcr_primer_p1>
		<pcr_primer_p2>CGACAATATTATTTGTGGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCG</canonical_amplicon>
		<polymorphic_amplicon>ATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAYTAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34001</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>394532</contig_pos>
        <strand>+</strand>
        <context>TCCYSTTKWY[A/T]AATTGATGAK</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAA</left_flank>
        <right_flank>AATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATTAATTTGGAATTATTTTGCTTTCAGCTGGAAAAAATAGCTAGAACAAAATGGCTTGGTGTGTTTTTTTTTCAGAGAACAATTAATTGAAAAAAATAAAGTCATAATATTGGCTGTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGCAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGACTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACT</canonical>
            <polymorphic>TTATTAATTTGGAATTATTTTGCTTTCAGCTGGAAAAAATAGCTAGAACAAAATGGCTTGGTGTGTTTTTTTTTCAGAGAACAATTAATTGAAAAAAATAAAGTCATAATATTGGCTGTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGCAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGACTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAAWAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATCTGACAACACGCATATCTT</pcr_primer_p1>
		<pcr_primer_p2>CGACAATATTATTTGTGGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCG</canonical_amplicon>
		<polymorphic_amplicon>ATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAAWAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34002</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>394542</contig_pos>
        <strand></strand>
        <context>WAATTGATGA[G/T]TKTTTTTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGA</left_flank>
        <right_flank>TATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAATTATTTTGCTTTCAGCTGGAAAAAATAGCTAGAACAAAATGGCTTGGTGTGTTTTTTTTTCAGAGAACAATTAATTGAAAAAAATAAAGTCATAATATTGGCTGTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGCAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGACTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGA</canonical>
            <polymorphic>GGAATTATTTTGCTTTCAGCTGGAAAAAATAGCTAGAACAAAATGGCTTGGTGTGTTTTTTTTTCAGAGAACAATTAATTGAAAAAAATAAAGTCATAATATTGGCTGTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGCAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGACTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAKTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATCTGACAACACGCATATCTT</pcr_primer_p1>
		<pcr_primer_p2>CGACAATATTATTTGTGGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCG</canonical_amplicon>
		<polymorphic_amplicon>ATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAKTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34003</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>394544</contig_pos>
        <strand>+</strand>
        <context>ATTGATGAKT[G/T]TTTTTGAACC</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGT</left_flank>
        <right_flank>TTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTATTTTGCTTTCAGCTGGAAAAAATAGCTAGAACAAAATGGCTTGGTGTGTTTTTTTTTCAGAGAACAATTAATTGAAAAAAATAAAGTCATAATATTGGCTGTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGCAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGACTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGC</canonical>
            <polymorphic>AATTATTTTGCTTTCAGCTGGAAAAAATAGCTAGAACAAAATGGCTTGGTGTGTTTTTTTTTCAGAGAACAATTAATTGAAAAAAATAAAGTCATAATATTGGCTGTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGCAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGACTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTKTTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATCTGACAACACGCATATCTT</pcr_primer_p1>
		<pcr_primer_p2>CGACAATATTATTTGTGGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCG</canonical_amplicon>
		<polymorphic_amplicon>ATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTKTTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34004</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>394561</contig_pos>
        <strand>+</strand>
        <context>AACCAGAGGG[A/G]GGGGGGGACG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGG</left_flank>
        <right_flank>GGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGAAAAAATAGCTAGAACAAAATGGCTTGGTGTGTTTTTTTTTCAGAGAACAATTAATTGAAAAAAATAAAGTCATAATATTGGCTGTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGCAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGACTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTA</canonical>
            <polymorphic>CTGGAAAAAATAGCTAGAACAAAATGGCTTGGTGTGTTTTTTTTTCAGAGAACAATTAATTGAAAAAAATAAAGTCATAATATTGGCTGTTAAAGTTTTTTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGCAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGACTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGRGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGACTCGAATAACGTGAG</pcr_primer_p1>
		<pcr_primer_p2>TACTCCCACACATCAGATAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTA</canonical_amplicon>
		<polymorphic_amplicon>GTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGRGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34005</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>394660</contig_pos>
        <strand>+</strand>
        <context>CAAATATTTT[C/T]GTGTTCAACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTT</left_flank>
        <right_flank>GTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGCAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGACTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAATTTTAGAACCATCTTCGTCACATCCTTTTCTCGGGAATCTTT</canonical>
            <polymorphic>TTTGAAATATGGGAAACGTGAATTTTTCTATTCTTGGTGCAAAACGAAATTTCGTAATGAATTTGTCTAAAAAATCATTGCAGCCATGGAAAAAAATCTCGAGAGACTTCACTTAATAGTATAGTCTAGGAACAAAAAAATCAAGCAAAGATTCTCACAATTTCCGTTTCAGTGTTTTTTTTCTCAGAATTCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTYGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAATTTTAGAACCATCTTCGTCACATCCTTTTCTCGGGAATCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGACTCGAATAACGTGAG</pcr_primer_p1>
		<pcr_primer_p2>TACTCCCACACATCAGATAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTA</canonical_amplicon>
		<polymorphic_amplicon>GTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTYGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34006</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>394845</contig_pos>
        <strand></strand>
        <context>TATCTGCTCT[T/C]TCGGYGTCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCT</left_flank>
        <right_flank>TCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATTCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAATTTTAGAACCATCTTCGTCACATCCTTTTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCGCATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATT</canonical>
            <polymorphic>AGAATTCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTYTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAATTTTAGAACCATCTTCGTCACATCCTTTTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCGCATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTATCTGATGTGTGGGAGTATC</pcr_primer_p1>
		<pcr_primer_p2>ATCAAACGTTTTTGGTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGAT</canonical_amplicon>
		<polymorphic_amplicon>ACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTYTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34007</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>394850</contig_pos>
        <strand>+</strand>
        <context>GCTCTYTCGG[C/T]GTCCGGAACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGG</left_flank>
        <right_flank>GTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAATTTTAGAACCATCTTCGTCACATCCTTTTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCGCATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCA</canonical>
            <polymorphic>TCAAAAAATGGTATATCTGACAACACGCATATCTTCACATTCTATCCGGATAACCGTACAGCTCGAGAAATCGAAATTCGAGGAGCCCCGCCGCAACGGAGAACGAAACCGGGACCAATGAGTGTGGCCGTGGACTCGAATAACGTGAGTCAAAGGATCCCCAAAACGAATTCCATTTCAATAATTGATGAGTATTTTTGAACCAGAGGGGGGGGGGGACGAGGAAAAAAAGCAAACCACAAATAATATTGTCGCAGACGAAAATGCAAATGTCAAAAGAAAAATTTTTCAATTTCAGCCAAATATTTTCGTGTTCAACCGACAAACCGGAAATGTTGACGTTTTTGGGACCAATGAACTATCTGATGTGTGGGAGTATCGGAAGTCTTTGAAAACCGAAAAGTTCAGTGGGTGAGTCTCTTCAAGAGAGATATGATTTGATTTGGAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGYGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAATTTTAGAACCATCTTCGTCACATCCTTTTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCGCATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATCTTCAAAGTTCCAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTCGAAAGATAAGTCAGATGTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGCGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAG</canonical_amplicon>
		<polymorphic_amplicon>GAAATCTTCAAAGTTCCAAAAATTTTCGTTGGTTCAGAATATCTGCTCTTTCGGYGTCCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34008</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>395352</contig_pos>
        <strand>+</strand>
        <context>AATTTTCCAG[A/G]TTTTTTTAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAG</left_flank>
        <right_flank>TTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAATTTTAGAACCATCTTCGTCACATCCTTTTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCGCATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTCAATAACTTTATTTTGCCTCCATATGGTTATTTTGGAACATAAAGAAACTTTCAACTTTCAAAAGTGTTACATTTGAAAAATTGGGTTTTAGAAAAGCCCAAAAAAATTGGATTTTCAAACATTCAAGATTTTCATGGTTTTAAAGTTTTTTGACCCCATTTTTTTTCGAATTCAAAAATTTCTTAAAAATCGGAAATTCCATGAAAATCAATGAAAATCGGCAAAAAACAAAAATAACTGAAGAACCATCTGGGCAAGTCGTTTGGGATTCGTCGAGTGAAAAGATAATACTACTCAAAAAATAAACATAGCCATTATCTCGTTTATTAAATTTCACTAGCTATCAATTCAATTTTCAGATATCTTCTCCATGTGTTTGATGTGACATCGTCTGCCCCATCAATGGTTCTCCGTGTTGTTGTGCCC</canonical>
            <polymorphic>CCGGAACAAATTCGTTTTATTATGTGAAGAGCGGAGTTTGGAGCGACAATTTTGCTTTGAACATTTTAGAGAGGTTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAATTTTAGAACCATCTTCGTCACATCCTTTTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCGCATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGRTTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTCAATAACTTTATTTTGCCTCCATATGGTTATTTTGGAACATAAAGAAACTTTCAACTTTCAAAAGTGTTACATTTGAAAAATTGGGTTTTAGAAAAGCCCAAAAAAATTGGATTTTCAAACATTCAAGATTTTCATGGTTTTAAAGTTTTTTGACCCCATTTTTTTTCGAATTCAAAAATTTCTTAAAAATCGGAAATTCCATGAAAATCAATGAAAATCGGCAAAAAACAAAAATAACTGAAGAACCATCTGGGCAAGTCGTTTGGGATTCGTCGAGTGAAAAGATAATACTACTCAAAAAATAAACATAGCCATTATCTCGTTTATTAAATTTCACTAGCTATCAATTCAATTTTCAGATATCTTCTCCATGTGTTTGATGTGACATCGTCTGCCCCATCAATGGTTCTCCGTGTTGTTGTGCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGGTTGGTCAGAAGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CATATGGAGGCAAAATAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTCAATAACTTTATTTTGCCTCCATATG</canonical_amplicon>
		<polymorphic_amplicon>AAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGRTTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTCAATAACTTTATTTTGCCTCCATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34009</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>395426</contig_pos>
        <strand>+</strand>
        <context>TTTTGTGGCT[C/T]AATAACTTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCT</left_flank>
        <right_flank>AATAACTTTATTTTGCCTCCATATGGTTATTTTGGAACATAAAGAAACTT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAATTTTAGAACCATCTTCGTCACATCCTTTTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCGCATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTCAATAACTTTATTTTGCCTCCATATGGTTATTTTGGAACATAAAGAAACTTTCAACTTTCAAAAGTGTTACATTTGAAAAATTGGGTTTTAGAAAAGCCCAAAAAAATTGGATTTTCAAACATTCAAGATTTTCATGGTTTTAAAGTTTTTTGACCCCATTTTTTTTCGAATTCAAAAATTTCTTAAAAATCGGAAATTCCATGAAAATCAATGAAAATCGGCAAAAAACAAAAATAACTGAAGAACCATCTGGGCAAGTCGTTTGGGATTCGTCGAGTGAAAAGATAATACTACTCAAAAAATAAACATAGCCATTATCTCGTTTATTAAATTTCACTAGCTATCAATTCAATTTTCAGATATCTTCTCCATGTGTTTGATGTGACATCGTCTGCCCCATCAATGGTTCTCCGTGTTGTTGTGCCCGTCAATAATGAAACTGAACTGTAAGTTTTCTTTATTTGACGCTCATCGACGTTCCTCGCATTCAGAGCAGAGCA</canonical>
            <polymorphic>TTAGAGAAGAAATCAAGAAACCAAAAACGTTTGATTTTCTAGAACATTTTCATTTCCAAGTGGAGAAGTTGGTTTTGCAAAAGGGAAAGTTGTTCAACATCTGACTTATCTTTCGAGCCCCTCTGGAATTATTTATGATTCCTTGAAAAAGTAGGCTCGGCGTTGAAAAGAGTGAAATCTAATGTTTTCGAATTTTAGAACCATCTTCGTCACATCCTTTTCTCGGGAATCTTTATATGTTTTGAAAATGAAGAAAAATAATATTATCGCATCTTCAAAGGTTGGTCAGAAGATTTTTGTCCAATTTGAATATCTAAAAAAATGCAGGATTACAATATTGGCTGTTCTCCCACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTYAATAACTTTATTTTGCCTCCATATGGTTATTTTGGAACATAAAGAAACTTTCAACTTTCAAAAGTGTTACATTTGAAAAATTGGGTTTTAGAAAAGCCCAAAAAAATTGGATTTTCAAACATTCAAGATTTTCATGGTTTTAAAGTTTTTTGACCCCATTTTTTTTCGAATTCAAAAATTTCTTAAAAATCGGAAATTCCATGAAAATCAATGAAAATCGGCAAAAAACAAAAATAACTGAAGAACCATCTGGGCAAGTCGTTTGGGATTCGTCGAGTGAAAAGATAATACTACTCAAAAAATAAACATAGCCATTATCTCGTTTATTAAATTTCACTAGCTATCAATTCAATTTTCAGATATCTTCTCCATGTGTTTGATGTGACATCGTCTGCCCCATCAATGGTTCTCCGTGTTGTTGTGCCCGTCAATAATGAAACTGAACTGTAAGTTTTCTTTATTTGACGCTCATCGACGTTCCTCGCATTCAGAGCAGAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTTCGATATGGGAAGATTT</pcr_primer_p1>
		<pcr_primer_p2>GCTTTTCTAAAACCCAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTCAATAACTTTATTTTGCCTCCATATGGTTATTTTGGAACATAAAGAAACTTTCAACTTTCAAAAGTGTTACATTTGAAAAATTGGGTTTTAGAAAAGC</canonical_amplicon>
		<polymorphic_amplicon>CACTTCGATATGGGAAGATTTCGATGGATCATTTCTCATTACCTGTCAGCCGGTCAGGTTTCGGTAATTTTCCAGTTTTTTTTAAATGCCATAAAAATTTCACATTCTCAGCAAACTGCAAAAACGTCCTCACAAGACTTTTTGTGGCTYAATAACTTTATTTTGCCTCCATATGGTTATTTTGGAACATAAAGAAACTTTCAACTTTCAAAAGTGTTACATTTGAAAAATTGGGTTTTAGAAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34010</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>396707</contig_pos>
        <strand>+</strand>
        <context>TCTTGAGTAC[A/T]CTTCTGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCATGGAAACATGCCAACATTTCTAGCTTGAAATCGTAGTCTTGAGTAC</left_flank>
        <right_flank>CTTCTGAAAACTGAGCATTGGCAGATTACCGCATCCTCTAACACTTACTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATTTTTAAAAACTATTTTGGCTAAATACATTTCAAAACAAAACTTTAATCAATCAGACTTTTTTTTGAAAATATGTATTTCAAAACGGTATCAATAAAAAACATACAGTAAATACTTAAAGTTCCGGGTTGATATGTGAAATGAGTGGAATATTTGTTTTGATTTCAAAAAAATTTCAAAAATCCGGTCTAACAATTGGGCGTTTCAAAACACAATTTCGCACTTGAAACTGCTTGAAAATGTTAATATTGTTTTCAGGAAATATTGCTTTTTCGAATTGATTTGGTCCAATTTTATAAGTAGCTACGAAGACACCCGGTTGATTGGGACTTGATCTGAAATTATTATATACATAATAATATTGTTTTTCTTATGGACCAGGCGTACCTGACTAAAAAGTCTCCAGAATTGCGCAGCCTTGAACAAGCAGCGGAATGTTCGAGCACTCCATGGAAACATGCCAACATTTCTAGCTTGAAATCGTAGTCTTGAGTACTCTTCTGAAAACTGAGCATTGGCAGATTACCGCATCCTCTAACACTTACTAATCTAGCTCCCAATGTTGCAATCGGTAAATGGTTTAAAGCATCTACACTTTGTAGCTTTCGCAAAAGTTCATCAACTGCATCAATCATTATAACATTGCATTCTCGTTTCCCATTTGGGCTTTTCATAACCAATCCAATGTAGTGACGATTATCCTGGAAAAAATGCACCAATTAATGAATCAAAATAAAAAACTACGAACGATTTCACTGGCTTTATAATGCGAAATTTGATTATTCATATAACGTCCCAAAAGACGACTCCGTCCATCGTCGATGTGGAAAAATGAAGTCATAAAATTGGCGACATTGAGAAACGTTTCAACTTTGTTAACGCTGATATATGGACCCAGCTCCTGAAAGTTTTTTTTTTAATTGTGAAATTTAAAAAAAAACAAAACTAACTTCTTGAGCTAAAAGTTGCCTGAATTCATTTGACGCATGACAATTGA</canonical>
            <polymorphic>AAAATTTTTAAAAACTATTTTGGCTAAATACATTTCAAAACAAAACTTTAATCAATCAGACTTTTTTTTGAAAATATGTATTTCAAAACGGTATCAATAAAAAACATACAGTAAATACTTAAAGTTCCGGGTTGATATGTGAAATGAGTGGAATATTTGTTTTGATTTCAAAAAAATTTCAAAAATCCGGTCTAACAATTGGGCGTTTCAAAACACAATTTCGCACTTGAAACTGCTTGAAAATGTTAATATTGTTTTCAGGAAATATTGCTTTTTCGAATTGATTTGGTCCAATTTTATAAGTAGCTACGAAGACACCCGGTTGATTGGGACTTGATCTGAAATTATTATATACATAATAATATTGTTTTTCTTATGGACCAGGCGTACCTGACTAAAAAGTCTCCAGAATTGCGCAGCCTTGAACAAGCAGCGGAATGTTCGAGCACTCCATGGAAACATGCCAACATTTCTAGCTTGAAATCGTAGTCTTGAGTACWCTTCTGAAAACTGAGCATTGGCAGATTACCGCATCCTCTAACACTTACTAATCTAGCTCCCAATGTTGCAATCGGTAAATGGTTTAAAGCATCTACACTTTGTAGCTTTCGCAAAAGTTCATCAACTGCATCAATCATTATAACATTGCATTCTCGTTTCCCATTTGGGCTTTTCATAACCAATCCAATGTAGTGACGATTATCCTGGAAAAAATGCACCAATTAATGAATCAAAATAAAAAACTACGAACGATTTCACTGGCTTTATAATGCGAAATTTGATTATTCATATAACGTCCCAAAAGACGACTCCGTCCATCGTCGATGTGGAAAAATGAAGTCATAAAATTGGCGACATTGAGAAACGTTTCAACTTTGTTAACGCTGATATATGGACCCAGCTCCTGAAAGTTTTTTTTTTAATTGTGAAATTTAAAAAAAAACAAAACTAACTTCTTGAGCTAAAAGTTGCCTGAATTCATTTGACGCATGACAATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGTACT</site>
                <isoschizomers>
                    <enzyme>Acc113I</enzyme>
                    <enzyme>ScaI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGGGACTTGATCTGAAATTAT</pcr_primer_p1>
		<pcr_primer_p2>CAACATTGGGAGCTAGATTAGTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATTGGGACTTGATCTGAAATTATTATATACATAATAATATTGTTTTTCTTATGGACCAGGCGTACCTGACTAAAAAGTCTCCAGAATTGCGCAGCCTTGAACAAGCAGCGGAATGTTCGAGCACTCCATGGAAACATGCCAACATTTCTAGCTTGAAATCGTAGTCTTGAGTACTCTTCTGAAAACTGAGCATTGGCAGATTACCGCATCCTCTAACACTTACTAATCTAGCTCCCAATGTTG</canonical_amplicon>
		<polymorphic_amplicon>ATTGGGACTTGATCTGAAATTATTATATACATAATAATATTGTTTTTCTTATGGACCAGGCGTACCTGACTAAAAAGTCTCCAGAATTGCGCAGCCTTGAACAAGCAGCGGAATGTTCGAGCACTCCATGGAAACATGCCAACATTTCTAGCTTGAAATCGTAGTCTTGAGTACWCTTCTGAAAACTGAGCATTGGCAGATTACCGCATCCTCTAACACTTACTAATCTAGCTCCCAATGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34011</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>397119</contig_pos>
        <strand>+</strand>
        <context>CTCCTGAAAG[A/G]TTTTTTTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAACGTTTCAACTTTGTTAACGCTGATATATGGACCCAGCTCCTGAAAG</left_flank>
        <right_flank>TTTTTTTTTAATTGTGAAATTTAAAAAAAAACAAAACTAACTTCTTGAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCGCAGCCTTGAACAAGCAGCGGAATGTTCGAGCACTCCATGGAAACATGCCAACATTTCTAGCTTGAAATCGTAGTCTTGAGTACTCTTCTGAAAACTGAGCATTGGCAGATTACCGCATCCTCTAACACTTACTAATCTAGCTCCCAATGTTGCAATCGGTAAATGGTTTAAAGCATCTACACTTTGTAGCTTTCGCAAAAGTTCATCAACTGCATCAATCATTATAACATTGCATTCTCGTTTCCCATTTGGGCTTTTCATAACCAATCCAATGTAGTGACGATTATCCTGGAAAAAATGCACCAATTAATGAATCAAAATAAAAAACTACGAACGATTTCACTGGCTTTATAATGCGAAATTTGATTATTCATATAACGTCCCAAAAGACGACTCCGTCCATCGTCGATGTGGAAAAATGAAGTCATAAAATTGGCGACATTGAGAAACGTTTCAACTTTGTTAACGCTGATATATGGACCCAGCTCCTGAAAGTTTTTTTTTTAATTGTGAAATTTAAAAAAAAACAAAACTAACTTCTTGAGCTAAAAGTTGCCTGAATTCATTTGACGCATGACAATTGACAACTGTATTAATGCATAACCTGGATTTGAAATATGATACAGTTTACAGAAGTGATCAATAAGATCTTAAAAACGTGGATTTCAGTTAATTTTGACCATATTCAGGATTCTGGAGTACTTTGAGTATTCTGGAGGGTAATAAAGAGACTTAGATTGAACATTTAAGGTTTCAGACTTATTCGAAAATACTCAGATTTTTAGTTATTTTCCGTCTTTTAAACCATACCTTTTTTAGCAAGCTGAAAACTATGCATTTTAAAAAATTGCTGTATGTGCATAGTTTTCAATCTAGGACTGTTTTACACCCTCTAAAACTTTCAAAGTGATAGGAATCTTAACATCCGACATCCAGACTTCTGAAAATTGTCGACATCAACCGAATAAACGTTTTTTAATATCTCATTGACCGGTG</canonical>
            <polymorphic>TGCGCAGCCTTGAACAAGCAGCGGAATGTTCGAGCACTCCATGGAAACATGCCAACATTTCTAGCTTGAAATCGTAGTCTTGAGTACTCTTCTGAAAACTGAGCATTGGCAGATTACCGCATCCTCTAACACTTACTAATCTAGCTCCCAATGTTGCAATCGGTAAATGGTTTAAAGCATCTACACTTTGTAGCTTTCGCAAAAGTTCATCAACTGCATCAATCATTATAACATTGCATTCTCGTTTCCCATTTGGGCTTTTCATAACCAATCCAATGTAGTGACGATTATCCTGGAAAAAATGCACCAATTAATGAATCAAAATAAAAAACTACGAACGATTTCACTGGCTTTATAATGCGAAATTTGATTATTCATATAACGTCCCAAAAGACGACTCCGTCCATCGTCGATGTGGAAAAATGAAGTCATAAAATTGGCGACATTGAGAAACGTTTCAACTTTGTTAACGCTGATATATGGACCCAGCTCCTGAAAGRTTTTTTTTTAATTGTGAAATTTAAAAAAAAACAAAACTAACTTCTTGAGCTAAAAGTTGCCTGAATTCATTTGACGCATGACAATTGACAACTGTATTAATGCATAACCTGGATTTGAAATATGATACAGTTTACAGAAGTGATCAATAAGATCTTAAAAACGTGGATTTCAGTTAATTTTGACCATATTCAGGATTCTGGAGTACTTTGAGTATTCTGGAGGGTAATAAAGAGACTTAGATTGAACATTTAAGGTTTCAGACTTATTCGAAAATACTCAGATTTTTAGTTATTTTCCGTCTTTTAAACCATACCTTTTTTAGCAAGCTGAAAACTATGCATTTTAAAAAATTGCTGTATGTGCATAGTTTTCAATCTAGGACTGTTTTACACCCTCTAAAACTTTCAAAGTGATAGGAATCTTAACATCCGACATCCAGACTTCTGAAAATTGTCGACATCAACCGAATAAACGTTTTTTAATATCTCATTGACCGGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTACGAACGATTTCACT</pcr_primer_p1>
		<pcr_primer_p2>AATGAATTCAGGCAACTTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTACGAACGATTTCACTGGCTTTATAATGCGAAATTTGATTATTCATATAACGTCCCAAAAGACGACTCCGTCCATCGTCGATGTGGAAAAATGAAGTCATAAAATTGGCGACATTGAGAAACGTTTCAACTTTGTTAACGCTGATATATGGACCCAGCTCCTGAAAGTTTTTTTTTTAATTGTGAAATTTAAAAAAAAACAAAACTAACTTCTTGAGCTAAAAGTTGCCTGAATTCATT</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTACGAACGATTTCACTGGCTTTATAATGCGAAATTTGATTATTCATATAACGTCCCAAAAGACGACTCCGTCCATCGTCGATGTGGAAAAATGAAGTCATAAAATTGGCGACATTGAGAAACGTTTCAACTTTGTTAACGCTGATATATGGACCCAGCTCCTGAAAGRTTTTTTTTTAATTGTGAAATTTAAAAAAAAACAAAACTAACTTCTTGAGCTAAAAGTTGCCTGAATTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34012</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>397261</contig_pos>
        <strand></strand>
        <context>TTacagaagt[G/T]atcaataaga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTGTATTAATGCATAACCTGGATTTGAAATATGATACAGTTTACAGAAGT</left_flank>
        <right_flank>ATCAATAAGATCTTAAAAACGTGGATTTCAGTTAATTTTGACCATATTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTCCCAATGTTGCAATCGGTAAATGGTTTAAAGCATCTACACTTTGTAGCTTTCGCAAAAGTTCATCAACTGCATCAATCATTATAACATTGCATTCTCGTTTCCCATTTGGGCTTTTCATAACCAATCCAATGTAGTGACGATTATCCTGGAAAAAATGCACCAATTAATGAATCAAAATAAAAAACTACGAACGATTTCACTGGCTTTATAATGCGAAATTTGATTATTCATATAACGTCCCAAAAGACGACTCCGTCCATCGTCGATGTGGAAAAATGAAGTCATAAAATTGGCGACATTGAGAAACGTTTCAACTTTGTTAACGCTGATATATGGACCCAGCTCCTGAAAGTTTTTTTTTTAATTGTGAAATTTAAAAAAAAACAAAACTAACTTCTTGAGCTAAAAGTTGCCTGAATTCATTTGACGCATGACAATTGACAACTGTATTAATGCATAACCTGGATTTGAAATATGATACAGTTTACAGAAGTGATCAATAAGATCTTAAAAACGTGGATTTCAGTTAATTTTGACCATATTCAGGATTCTGGAGTACTTTGAGTATTCTGGAGGGTAATAAAGAGACTTAGATTGAACATTTAAGGTTTCAGACTTATTCGAAAATACTCAGATTTTTAGTTATTTTCCGTCTTTTAAACCATACCTTTTTTAGCAAGCTGAAAACTATGCATTTTAAAAAATTGCTGTATGTGCATAGTTTTCAATCTAGGACTGTTTTACACCCTCTAAAACTTTCAAAGTGATAGGAATCTTAACATCCGACATCCAGACTTCTGAAAATTGTCGACATCAACCGAATAAACGTTTTTTAATATCTCATTGACCGGTGCGGTAGATGCTCGCTAACTTCGGATTACCTCACTATATGATCCCTCTCCTCTATATTTCGATTTCTGATCGTACGTGGTATTGGAACAAGACCCATAAACTGTAGAAACCATTTACTCTTTTTTTCAGAAGGAATACAAACT</canonical>
            <polymorphic>AGCTCCCAATGTTGCAATCGGTAAATGGTTTAAAGCATCTACACTTTGTAGCTTTCGCAAAAGTTCATCAACTGCATCAATCATTATAACATTGCATTCTCGTTTCCCATTTGGGCTTTTCATAACCAATCCAATGTAGTGACGATTATCCTGGAAAAAATGCACCAATTAATGAATCAAAATAAAAAACTACGAACGATTTCACTGGCTTTATAATGCGAAATTTGATTATTCATATAACGTCCCAAAAGACGACTCCGTCCATCGTCGATGTGGAAAAATGAAGTCATAAAATTGGCGACATTGAGAAACGTTTCAACTTTGTTAACGCTGATATATGGACCCAGCTCCTGAAAGTTTTTTTTTTAATTGTGAAATTTAAAAAAAAACAAAACTAACTTCTTGAGCTAAAAGTTGCCTGAATTCATTTGACGCATGACAATTGACAACTGTATTAATGCATAACCTGGATTTGAAATATGATACAGTTTACAGAAGTKATCAATAAGATCTTAAAAACGTGGATTTCAGTTAATTTTGACCATATTCAGGATTCTGGAGTACTTTGAGTATTCTGGAGGGTAATAAAGAGACTTAGATTGAACATTTAAGGTTTCAGACTTATTCGAAAATACTCAGATTTTTAGTTATTTTCCGTCTTTTAAACCATACCTTTTTTAGCAAGCTGAAAACTATGCATTTTAAAAAATTGCTGTATGTGCATAGTTTTCAATCTAGGACTGTTTTACACCCTCTAAAACTTTCAAAGTGATAGGAATCTTAACATCCGACATCCAGACTTCTGAAAATTGTCGACATCAACCGAATAAACGTTTTTTAATATCTCATTGACCGGTGCGGTAGATGCTCGCTAACTTCGGATTACCTCACTATATGATCCCTCTCCTCTATATTTCGATTTCTGATCGTACGTGGTATTGGAACAAGACCCATAAACTGTAGAAACCATTTACTCTTTTTTTCAGAAGGAATACAAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>499 388 76 28 9</canonical_bands>
                <polymorphic_bands>508 388 76 28</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>198 126 99 98 87 71 65 45 43 40 32 29 23 23 21</canonical_bands>
                <polymorphic_bands>198 149 99 98 87 71 65 45 43 40 32 29 23 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAAGTTGCCTGAATTCATTT</pcr_primer_p1>
		<pcr_primer_p2>ACGGAAAATAACTAAAAATCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAAAGTTGCCTGAATTCATTTGACGCATGACAATTGACAACTGTATTAATGCATAACCTGGATTTGAAATATGATACAGTTTACAGAAGTGATCAATAAGATCTTAAAAACGTGGATTTCAGTTAATTTTGACCATATTCAGGATTCTGGAGTACTTTGAGTATTCTGGAGGGTAATAAAGAGACTTAGATTGAACATTTAAGGTTTCAGACTTATTCGAAAATACTCAGATTTTTAGTTATTTTCCGT</canonical_amplicon>
		<polymorphic_amplicon>TAAAAGTTGCCTGAATTCATTTGACGCATGACAATTGACAACTGTATTAATGCATAACCTGGATTTGAAATATGATACAGTTTACAGAAGTKATCAATAAGATCTTAAAAACGTGGATTTCAGTTAATTTTGACCATATTCAGGATTCTGGAGTACTTTGAGTATTCTGGAGGGTAATAAAGAGACTTAGATTGAACATTTAAGGTTTCAGACTTATTCGAAAATACTCAGATTTTTAGTTATTTTCCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34013</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>416007</contig_pos>
        <strand>+</strand>
        <context>TAGTTTCTTC[A/T]YAMMWRCTMT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTC</left_flank>
        <right_flank>AAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACATCCAGCTACCGTATGCCCCACCAATCAGAGCATTGCTGATAGAAATCATTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCAT</canonical>
            <polymorphic>CAACATCCAGCTACCGTATGCCCCACCAATCAGAGCATTGCTGATAGAAATCATTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCWAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAATTTTGAAATTGATGA</pcr_primer_p1>
		<pcr_primer_p2>TGGTTTAATGAATGCATGTG</pcr_primer_p2>
		<pcr_amplicon_size>566</pcr_amplicon_size>
		<canonical_amplicon>GGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACG</canonical_amplicon>
		<polymorphic_amplicon>GGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCWAAAAATCTATTGAACAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34014</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>416008</contig_pos>
        <strand>+</strand>
        <context>AGTTTCTTCW[C/T]AMMWRCTMTW</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCT</left_flank>
        <right_flank>AAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACATCCAGCTACCGTATGCCCCACCAATCAGAGCATTGCTGATAGAAATCATTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATT</canonical>
            <polymorphic>AACATCCAGCTACCGTATGCCCCACCAATCAGAGCATTGCTGATAGAAATCATTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTYAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAATTTTGAAATTGATGA</pcr_primer_p1>
		<pcr_primer_p2>TGGTTTAATGAATGCATGTG</pcr_primer_p2>
		<pcr_amplicon_size>566</pcr_amplicon_size>
		<canonical_amplicon>GGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGG</canonical_amplicon>
		<polymorphic_amplicon>GGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTYAAAATCTATTGAACAACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34015</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>416010</contig_pos>
        <strand>+</strand>
        <context>TTTCTTCWYA[A/C]MWRCTMTWGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAA</left_flank>
        <right_flank>AATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCCAGCTACCGTATGCCCCACCAATCAGAGCATTGCTGATAGAAATCATTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAA</canonical>
            <polymorphic>CATCCAGCTACCGTATGCCCCACCAATCAGAGCATTGCTGATAGAAATCATTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAMAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAATTTTGAAATTGATGA</pcr_primer_p1>
		<pcr_primer_p2>TGGTTTAATGAATGCATGTG</pcr_primer_p2>
		<pcr_amplicon_size>566</pcr_amplicon_size>
		<canonical_amplicon>GGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAG</canonical_amplicon>
		<polymorphic_amplicon>GGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAMAATCTATTGAACAACGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34016</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>416011</contig_pos>
        <strand>+</strand>
        <context>TTCTTCWYAM[A/C]WRCTMTWGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAA</left_flank>
        <right_flank>ATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCAGCTACCGTATGCCCCACCAATCAGAGCATTGCTGATAGAAATCATTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAA</canonical>
            <polymorphic>ATCCAGCTACCGTATGCCCCACCAATCAGAGCATTGCTGATAGAAATCATTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAMATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAATTTTGAAATTGATGA</pcr_primer_p1>
		<pcr_primer_p2>TGGTTTAATGAATGCATGTG</pcr_primer_p2>
		<pcr_amplicon_size>566</pcr_amplicon_size>
		<canonical_amplicon>GGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGA</canonical_amplicon>
		<polymorphic_amplicon>GGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAMATCTATTGAACAACGGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34017</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>416012</contig_pos>
        <strand>+</strand>
        <context>TCTTCWYAMM[A/T]RCTMTWGAAW</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAA</left_flank>
        <right_flank>TCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAGCTACCGTATGCCCCACCAATCAGAGCATTGCTGATAGAAATCATTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAAC</canonical>
            <polymorphic>TCCAGCTACCGTATGCCCCACCAATCAGAGCATTGCTGATAGAAATCATTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAWTCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAATTTTGAAATTGATGA</pcr_primer_p1>
		<pcr_primer_p2>TGGTTTAATGAATGCATGTG</pcr_primer_p2>
		<pcr_amplicon_size>566</pcr_amplicon_size>
		<canonical_amplicon>GGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAA</canonical_amplicon>
		<polymorphic_amplicon>GGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAWTCTATTGAACAACGGAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34018</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>416013</contig_pos>
        <strand>+</strand>
        <context>CTTCWYAMMW[A/G]CTMTWGAAWA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAA</left_flank>
        <right_flank>CTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGCTACCGTATGCCCCACCAATCAGAGCATTGCTGATAGAAATCATTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACC</canonical>
            <polymorphic>CCAGCTACCGTATGCCCCACCAATCAGAGCATTGCTGATAGAAATCATTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAARCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAATTTTGAAATTGATGA</pcr_primer_p1>
		<pcr_primer_p2>TGGTTTAATGAATGCATGTG</pcr_primer_p2>
		<pcr_amplicon_size>566</pcr_amplicon_size>
		<canonical_amplicon>GGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAAT</canonical_amplicon>
		<polymorphic_amplicon>GGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAARCTATTGAACAACGGAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34019</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>416016</contig_pos>
        <strand>+</strand>
        <context>CWYAMMWRCT[A/C]TWGAAWAACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCT</left_flank>
        <right_flank>TTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTACCGTATGCCCCACCAATCAGAGCATTGCTGATAGAAATCATTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCAAG</canonical>
            <polymorphic>GCTACCGTATGCCCCACCAATCAGAGCATTGCTGATAGAAATCATTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTMTTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAATTTTGAAATTGATGA</pcr_primer_p1>
		<pcr_primer_p2>TGGTTTAATGAATGCATGTG</pcr_primer_p2>
		<pcr_amplicon_size>566</pcr_amplicon_size>
		<canonical_amplicon>GGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCA</canonical_amplicon>
		<polymorphic_amplicon>GGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTMTTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34020</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>416018</contig_pos>
        <strand>+</strand>
        <context>YAMMWRCTMT[A/T]GAAWAACGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTAT</left_flank>
        <right_flank>GAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACCGTATGCCCCACCAATCAGAGCATTGCTGATAGAAATCATTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCAAGCT</canonical>
            <polymorphic>TACCGTATGCCCCACCAATCAGAGCATTGCTGATAGAAATCATTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATWGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCAAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAATTTTGAAATTGATGA</pcr_primer_p1>
		<pcr_primer_p2>TGGTTTAATGAATGCATGTG</pcr_primer_p2>
		<pcr_amplicon_size>566</pcr_amplicon_size>
		<canonical_amplicon>GGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCA</canonical_amplicon>
		<polymorphic_amplicon>GGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATWGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34021</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>416022</contig_pos>
        <strand>+</strand>
        <context>WRCTMTWGAA[A/T]AACGGAGAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAA</left_flank>
        <right_flank>AACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATGCCCCACCAATCAGAGCATTGCTGATAGAAATCATTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCAAGCTGTCC</canonical>
            <polymorphic>GTATGCCCCACCAATCAGAGCATTGCTGATAGAAATCATTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAAWAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCAAGCTGTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAATTTTGAAATTGATGA</pcr_primer_p1>
		<pcr_primer_p2>TGGTTTAATGAATGCATGTG</pcr_primer_p2>
		<pcr_amplicon_size>566</pcr_amplicon_size>
		<canonical_amplicon>GGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCA</canonical_amplicon>
		<polymorphic_amplicon>GGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAAWAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34022</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>416050</contig_pos>
        <strand>+</strand>
        <context>GAACATTTTT[A/T]RAAYWTRATW</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTT</left_flank>
        <right_flank>AAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGAAATCATTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCAAGCTGTCCACATAAGGACCACCATGGTCCAATGAGG</canonical>
            <polymorphic>ATAGAAATCATTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTWAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCAAGCTGTCCACATAAGGACCACCATGGTCCAATGAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 455 46</canonical_bands>
                <polymorphic_bands>545 455</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>195 177 146 119 118 84 72 46 43</canonical_bands>
                <polymorphic_bands>223 195 146 119 118 84 72 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCGAAAGGATAATGATTTAGTT</pcr_primer_p1>
		<pcr_primer_p2>TGGTTTAATGAATGCATGTG</pcr_primer_p2>
		<pcr_amplicon_size>537</pcr_amplicon_size>
		<canonical_amplicon>CTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCA</canonical_amplicon>
		<polymorphic_amplicon>CTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTWAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34023</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>416051</contig_pos>
        <strand>+</strand>
        <context>AACATTTTTW[A/G]AAYWTRATWC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTA</left_flank>
        <right_flank>AACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGAAATCATTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCAAGCTGTCCACATAAGGACCACCATGGTCCAATGAGGC</canonical>
            <polymorphic>TAGAAATCATTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTARAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCAAGCTGTCCACATAAGGACCACCATGGTCCAATGAGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>498 456 46</canonical_bands>
                <polymorphic_bands>544 456</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>195 177 146 119 118 83 72 46 44</canonical_bands>
                <polymorphic_bands>223 195 146 119 118 83 72 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCGAAAGGATAATGATTTAGTT</pcr_primer_p1>
		<pcr_primer_p2>TGGTTTAATGAATGCATGTG</pcr_primer_p2>
		<pcr_amplicon_size>537</pcr_amplicon_size>
		<canonical_amplicon>CTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCA</canonical_amplicon>
		<polymorphic_amplicon>CTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTARAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34024</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>416054</contig_pos>
        <strand>+</strand>
        <context>ATTTTTWRAA[C/T]WTRATWCCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAA</left_flank>
        <right_flank>ATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCATTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCAAGCTGTCCACATAAGGACCACCATGGTCCAATGAGGCTGT</canonical>
            <polymorphic>AAATCATTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAAYATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCAAGCTGTCCACATAAGGACCACCATGGTCCAATGAGGCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCGAAAGGATAATGATTTAGTT</pcr_primer_p1>
		<pcr_primer_p2>TGGTTTAATGAATGCATGTG</pcr_primer_p2>
		<pcr_amplicon_size>537</pcr_amplicon_size>
		<canonical_amplicon>CTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCA</canonical_amplicon>
		<polymorphic_amplicon>CTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAAYATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34025</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>416055</contig_pos>
        <strand>+</strand>
        <context>TTTTTWRAAY[A/T]TRATWCCTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAAC</left_flank>
        <right_flank>TAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCATTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCAAGCTGTCCACATAAGGACCACCATGGTCCAATGAGGCTGTC</canonical>
            <polymorphic>AATCATTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACWTAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCAAGCTGTCCACATAAGGACCACCATGGTCCAATGAGGCTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCGAAAGGATAATGATTTAGTT</pcr_primer_p1>
		<pcr_primer_p2>TGGTTTAATGAATGCATGTG</pcr_primer_p2>
		<pcr_amplicon_size>537</pcr_amplicon_size>
		<canonical_amplicon>CTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCA</canonical_amplicon>
		<polymorphic_amplicon>CTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACWTAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34026</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>416057</contig_pos>
        <strand>+</strand>
        <context>TTTWRAAYWT[A/G]ATWCCTGAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACAT</left_flank>
        <right_flank>ATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCAAGCTGTCCACATAAGGACCACCATGGTCCAATGAGGCTGTCCT</canonical>
            <polymorphic>TCATTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATRATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCAAGCTGTCCACATAAGGACCACCATGGTCCAATGAGGCTGTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCGAAAGGATAATGATTTAGTT</pcr_primer_p1>
		<pcr_primer_p2>TGGTTTAATGAATGCATGTG</pcr_primer_p2>
		<pcr_amplicon_size>537</pcr_amplicon_size>
		<canonical_amplicon>CTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCA</canonical_amplicon>
		<polymorphic_amplicon>CTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATRATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34027</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>416060</contig_pos>
        <strand>+</strand>
        <context>WRAAYWTRAT[A/T]CCTGAACATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAAT</left_flank>
        <right_flank>CCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCAAGCTGTCCACATAAGGACCACCATGGTCCAATGAGGCTGTCCTTTC</canonical>
            <polymorphic>TTGAGCTCTACGCAACTCTGCAAAATACGCCTTTTCAGGAATGCAAATCACATTTTCACCAAGTAAAAATAGATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATWCCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCAAGCTGTCCACATAAGGACCACCATGGTCCAATGAGGCTGTCCTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCGAAAGGATAATGATTTAGTT</pcr_primer_p1>
		<pcr_primer_p2>TGGTTTAATGAATGCATGTG</pcr_primer_p2>
		<pcr_amplicon_size>537</pcr_amplicon_size>
		<canonical_amplicon>CTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCA</canonical_amplicon>
		<polymorphic_amplicon>CTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATWCCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34028</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>416131</contig_pos>
        <strand>+</strand>
        <context>taagaacaaT[A/T]TTTTTTTYCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAAT</left_flank>
        <right_flank>TTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCAAGCTGTCCACATAAGGACCACCATGGTCCAATGAGGCTGTCCTTTCAAATGCAAGACCAGCGGAACAAACAACCGCAGCTGGCCACAGGATTTCCGTTAGGTAACCATTATGGTGGT</canonical>
            <polymorphic>GATTAACACACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATWTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCAAGCTGTCCACATAAGGACCACCATGGTCCAATGAGGCTGTCCTTTCAAATGCAAGACCAGCGGAACAAACAACCGCAGCTGGCCACAGGATTTCCGTTAGGTAACCATTATGGTGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>303 186 134 115 93 53 37 17 16 15 14 9 8</canonical_bands>
                <polymorphic_bands>303 186 134 115 93 53 51 17 16 15 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAGAATAATACCTGAACATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGGTTTAATGAATGCATGTG</pcr_primer_p2>
		<pcr_amplicon_size>489</pcr_amplicon_size>
		<canonical_amplicon>GGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCA</canonical_amplicon>
		<polymorphic_amplicon>GGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATWTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34029</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>416139</contig_pos>
        <strand>+</strand>
        <context>aTWTTTTTTT[C/T]CGAATTTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTT</left_flank>
        <right_flank>CGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCAAGCTGTCCACATAAGGACCACCATGGTCCAATGAGGCTGTCCTTTCAAATGCAAGACCAGCGGAACAAACAACCGCAGCTGGCCACAGGATTTCCGTTAGGTAACCATTATGGTGGTCTAGTCTA</canonical>
            <polymorphic>CACACATCGAATTCTTTTTTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTYCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCAAGCTGTCCACATAAGGACCACCATGGTCCAATGAGGCTGTCCTTTCAAATGCAAGACCAGCGGAACAAACAACCGCAGCTGGCCACAGGATTTCCGTTAGGTAACCATTATGGTGGTCTAGTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>500 341 159</canonical_bands>
                <polymorphic_bands>659 341</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>334 304 166 159 29 8</canonical_bands>
                <polymorphic_bands>334 325 304 29 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAGAATAATACCTGAACATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGGTTTAATGAATGCATGTG</pcr_primer_p2>
		<pcr_amplicon_size>489</pcr_amplicon_size>
		<canonical_amplicon>GGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCA</canonical_amplicon>
		<polymorphic_amplicon>GGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTYCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34030</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>416157</contig_pos>
        <strand></strand>
        <context>TTATAAAATa[C/T]agtaccggtt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATA</left_flank>
        <right_flank>AGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCAAGCTGTCCACATAAGGACCACCATGGTCCAATGAGGCTGTCCTTTCAAATGCAAGACCAGCGGAACAAACAACCGCAGCTGGCCACAGGATTTCCGTTAGGTAACCATTATGGTGGTCTAGTCTAATTAGAAATTCTAAGCCA</canonical>
            <polymorphic>TTTTTCTAAGTCTCTCACTATGAGAGACCTACCGTAAGACAGTGGGAAAGAAACGACATTTTTTCATGCGTTTCTCAAAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATAYAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCAAGCTGTCCACATAAGGACCACCATGGTCCAATGAGGCTGTCCTTTCAAATGCAAGACCAGCGGAACAAACAACCGCAGCTGGCCACAGGATTTCCGTTAGGTAACCATTATGGTGGTCTAGTCTAATTAGAAATTCTAAGCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>499 460 33 8</canonical_bands>
                <polymorphic_bands>959 33 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAGAATAATACCTGAACATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGGTTTAATGAATGCATGTG</pcr_primer_p2>
		<pcr_amplicon_size>489</pcr_amplicon_size>
		<canonical_amplicon>GGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCA</canonical_amplicon>
		<polymorphic_amplicon>GGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATAYAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34031</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>416234</contig_pos>
        <strand></strand>
        <context>ttCTTTTGTC[T/C]GRCGCTTTTa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTC</left_flank>
        <right_flank>GACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCAAGCTGTCCACATAAGGACCACCATGGTCCAATGAGGCTGTCCTTTCAAATGCAAGACCAGCGGAACAAACAACCGCAGCTGGCCACAGGATTTCCGTTAGGTAACCATTATGGTGGTCTAGTCTAATTAGAAATTCTAAGCCATCGATTCAAAATACATTCAAATTGGAATATCAGATTTTAGAAAAAAAATTACCATCAGGACCCCGTGTCAGTCATAT</canonical>
            <polymorphic>AAAATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCYGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCAAGCTGTCCACATAAGGACCACCATGGTCCAATGAGGCTGTCCTTTCAAATGCAAGACCAGCGGAACAAACAACCGCAGCTGGCCACAGGATTTCCGTTAGGTAACCATTATGGTGGTCTAGTCTAATTAGAAATTCTAAGCCATCGATTCAAAATACATTCAAATTGGAATATCAGATTTTAGAAAAAAAATTACCATCAGGACCCCGTGTCAGTCATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGAATAATACCTGAACATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGGTTTAATGAATGCATGTG</pcr_primer_p2>
		<pcr_amplicon_size>489</pcr_amplicon_size>
		<canonical_amplicon>GGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCA</canonical_amplicon>
		<polymorphic_amplicon>GGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCYGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34032</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>416236</contig_pos>
        <strand></strand>
        <context>CTTTTGTCYG[A/G]CGCTTTTaga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTG</left_flank>
        <right_flank>CGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCAAGCTGTCCACATAAGGACCACCATGGTCCAATGAGGCTGTCCTTTCAAATGCAAGACCAGCGGAACAAACAACCGCAGCTGGCCACAGGATTTCCGTTAGGTAACCATTATGGTGGTCTAGTCTAATTAGAAATTCTAAGCCATCGATTCAAAATACATTCAAATTGGAATATCAGATTTTAGAAAAAAAATTACCATCAGGACCCCGTGTCAGTCATATAG</canonical>
            <polymorphic>AATAGAATTATGTGAGTTAACGATGATGTAGAGCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGRCGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCAAGCTGTCCACATAAGGACCACCATGGTCCAATGAGGCTGTCCTTTCAAATGCAAGACCAGCGGAACAAACAACCGCAGCTGGCCACAGGATTTCCGTTAGGTAACCATTATGGTGGTCTAGTCTAATTAGAAATTCTAAGCCATCGATTCAAAATACATTCAAATTGGAATATCAGATTTTAGAAAAAAAATTACCATCAGGACCCCGTGTCAGTCATATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>285 283 125 106 88 66 47</canonical_bands>
                <polymorphic_bands>351 283 125 106 88 47</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAGAATAATACCTGAACATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGGTTTAATGAATGCATGTG</pcr_primer_p2>
		<pcr_amplicon_size>489</pcr_amplicon_size>
		<canonical_amplicon>GGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCA</canonical_amplicon>
		<polymorphic_amplicon>GGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGRCGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34033</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>416268</contig_pos>
        <strand>+</strand>
        <context>tacgtttttt[A/G]agtgaaaaat</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTT</left_flank>
        <right_flank>AGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCAAGCTGTCCACATAAGGACCACCATGGTCCAATGAGGCTGTCCTTTCAAATGCAAGACCAGCGGAACAAACAACCGCAGCTGGCCACAGGATTTCCGTTAGGTAACCATTATGGTGGTCTAGTCTAATTAGAAATTCTAAGCCATCGATTCAAAATACATTCAAATTGGAATATCAGATTTTAGAAAAAAAATTACCATCAGGACCCCGTGTCAGTCATATAGAAAAGACACAAATGAAATGAAGACTATTCTTA</canonical>
            <polymorphic>GCTCACACATTTTTTAGAGCTGTTGGAGGTGAAAAAAAATAATGGTTCTGGGTAGGGATCTAATATTTACCAAATCAAAAGGGTTCCTAATCAGAACTATTCTTAAAAGTGATGAGTTTACACACATTCATTGTTCACTACGGAACTTTGTAAAACCCAAATTGGTGCGCATCAAAATTCGGAAAATTTTGAAATTGATGAAAAAATAACTTCGAAAGGATAATGATTTAGTTTCTTCTAAAAATCTATTGAACAACGGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTRAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCAAGCTGTCCACATAAGGACCACCATGGTCCAATGAGGCTGTCCTTTCAAATGCAAGACCAGCGGAACAAACAACCGCAGCTGGCCACAGGATTTCCGTTAGGTAACCATTATGGTGGTCTAGTCTAATTAGAAATTCTAAGCCATCGATTCAAAATACATTCAAATTGGAATATCAGATTTTAGAAAAAAAATTACCATCAGGACCCCGTGTCAGTCATATAGAAAAGACACAAATGAAATGAAGACTATTCTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGAATAATACCTGAACATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGGTTTAATGAATGCATGTG</pcr_primer_p2>
		<pcr_amplicon_size>489</pcr_amplicon_size>
		<canonical_amplicon>GGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTTAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCA</canonical_amplicon>
		<polymorphic_amplicon>GGAGAATAATACCTGAACATTTTTAAAACATAATACCTGAACATTTTTAGAATTTGTCAAAAAAAAATTTAAAGAAAAAAAATAAATAAAAAAAATAAGAACAATTTTTTTTTTCGAATTTTTATAAAATACAGTACCGGTTAATAAGATATTCAAAAATGTATTTTTTTTAGCTTCTTTTTGGCTATTTTGACCATTTTCTTTTGTCTGACGCTTTTAGACCCTTGTTTTTTACGTTTTTTRAGTGAAAAATTGGTCAAACAGGATGTCTTTCAGAAATCGAAAAATGACTGAAAAACTAGAAATTCTCGAAAAGTTCTGCGAATGTAATGTTTTTAATCTAGTTCTCTTTTACACTCTCCAATATTTTCAAAGTTATCGGAAACTTGAAAACCAAGCTCCAGGCTCCTAAAAATGGTTGAAATAGCCAGAAATGAACTAAAAACACATCTTATTGATCGTAAATGCACACATGCATTCATTAAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34034</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>421764</contig_pos>
        <strand></strand>
        <context>TGTCGATGag[G/A]aaaaaacagc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTTTCATTATTGGTTCTTTGGAGATGTGCAACGTTTACAATGTCGATGAG</left_flank>
        <right_flank>AAAAAACAGCACTATGATTTGATTCGCGGCCAGCTGGCTTTTGGAGGAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATTAAGATTTTAAAGGAAGAAAAACATATCTGAAATAGCGGAAAACAAAAAAATATGGGAATGCATTTAAAAAAAGAATGGAAATACAATTTTTAGAAACCAGAGGGGCTAAAAAGCCATTGTTGCAGTGGGCAGAGTTTATTTGAAGGAGTTTCGGAGTGAGTGAAAAATGAGTGATGTTTCTGCCAAATCAAAAGTTGAACAAGAATGGAGTATAGTTAAATAGGGTTGCAAGGAAAGTAACTGTCCATTGTTTAATTTTTTAAACACAGAAACAAAAAATCAAATCAGGAGTTTGAGGGGGCGTAAAGAAAAAGCGTCCAGCTAAAGCGGCCCAGGTCTTACTTGGCTTTCCGTGGAACATTGGATCTCGCGTTAATTAAGGAATGTCAATTCTGTCCTACGGAATGGAGGGCTCTCCACATTCCTCAAACTCCATACTTGACCCTTTCATTATTGGTTCTTTGGAGATGTGCAACGTTTACAATGTCGATGAGGAAAAAACAGCACTATGATTTGATTCGCGGCCAGCTGGCTTTTGGAGGAATGGTATCCACAAGTTACCTGAATGTTGTCAGCATGTCGTGCACCACGACAGTGCATACTGTCAATCTTGGATAATTATTATTTTTGTGTTATTCACAAATTAAATAAATGGACAGTTACTTTCCTTCCAACCTAATATTTTTCACGAAAAATTTTTCGAAATTCCAGAATTTCATTGAAACTTTCAAAAAACCTAGACCCACGGTTTTTGATTTCCAAGTATTCTAAAACCATGAAATCAGAAACAGAGATTAGGAAAACCTTCAATAATTTTTTTTTCAAATTTATGATTTCATGCCACACGAATCCTAGATTTTCAAAGAGAATCTTAAATGAAGCCCTTATGAATGAGAAAGATTATGAACTAGAGAACCTTTAGAAAATCAGTAACAATAATTTGTTTTATCAACAAAAAAGTACACAATTTCGTTCAATATTTATTCTTTATTACA</canonical>
            <polymorphic>AGATTAAGATTTTAAAGGAAGAAAAACATATCTGAAATAGCGGAAAACAAAAAAATATGGGAATGCATTTAAAAAAAGAATGGAAATACAATTTTTAGAAACCAGAGGGGCTAAAAAGCCATTGTTGCAGTGGGCAGAGTTTATTTGAAGGAGTTTCGGAGTGAGTGAAAAATGAGTGATGTTTCTGCCAAATCAAAAGTTGAACAAGAATGGAGTATAGTTAAATAGGGTTGCAAGGAAAGTAACTGTCCATTGTTTAATTTTTTAAACACAGAAACAAAAAATCAAATCAGGAGTTTGAGGGGGCGTAAAGAAAAAGCGTCCAGCTAAAGCGGCCCAGGTCTTACTTGGCTTTCCGTGGAACATTGGATCTCGCGTTAATTAAGGAATGTCAATTCTGTCCTACGGAATGGAGGGCTCTCCACATTCCTCAAACTCCATACTTGACCCTTTCATTATTGGTTCTTTGGAGATGTGCAACGTTTACAATGTCGATGAGRAAAAAACAGCACTATGATTTGATTCGCGGCCAGCTGGCTTTTGGAGGAATGGTATCCACAAGTTACCTGAATGTTGTCAGCATGTCGTGCACCACGACAGTGCATACTGTCAATCTTGGATAATTATTATTTTTGTGTTATTCACAAATTAAATAAATGGACAGTTACTTTCCTTCCAACCTAATATTTTTCACGAAAAATTTTTCGAAATTCCAGAATTTCATTGAAACTTTCAAAAAACCTAGACCCACGGTTTTTGATTTCCAAGTATTCTAAAACCATGAAATCAGAAACAGAGATTAGGAAAACCTTCAATAATTTTTTTTTCAAATTTATGATTTCATGCCACACGAATCCTAGATTTTCAAAGAGAATCTTAAATGAAGCCCTTATGAATGAGAAAGATTATGAACTAGAGAACCTTTAGAAAATCAGTAACAATAATTTGTTTTATCAACAAAAAAGTACACAATTTCGTTCAATATTTATTCTTTATTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCCTTTCATTATTGGTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTAGAATACTTGGAAATCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>331</pcr_amplicon_size>
		<canonical_amplicon>ACCCTTTCATTATTGGTTCTTTGGAGATGTGCAACGTTTACAATGTCGATGAGGAAAAAACAGCACTATGATTTGATTCGCGGCCAGCTGGCTTTTGGAGGAATGGTATCCACAAGTTACCTGAATGTTGTCAGCATGTCGTGCACCACGACAGTGCATACTGTCAATCTTGGATAATTATTATTTTTGTGTTATTCACAAATTAAATAAATGGACAGTTACTTTCCTTCCAACCTAATATTTTTCACGAAAAATTTTTCGAAATTCCAGAATTTCATTGAAACTTTCAAAAAACCTAGACCCACGGTTTTTGATTTCCAAGTATTCTAAA</canonical_amplicon>
		<polymorphic_amplicon>ACCCTTTCATTATTGGTTCTTTGGAGATGTGCAACGTTTACAATGTCGATGAGRAAAAAACAGCACTATGATTTGATTCGCGGCCAGCTGGCTTTTGGAGGAATGGTATCCACAAGTTACCTGAATGTTGTCAGCATGTCGTGCACCACGACAGTGCATACTGTCAATCTTGGATAATTATTATTTTTGTGTTATTCACAAATTAAATAAATGGACAGTTACTTTCCTTCCAACCTAATATTTTTCACGAAAAATTTTTCGAAATTCCAGAATTTCATTGAAACTTTCAAAAAACCTAGACCCACGGTTTTTGATTTCCAAGTATTCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34035</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>441201</contig_pos>
        <strand></strand>
        <context>aaattcttac[C/T]attaatatca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGATTTCTGTGAACAGTATCAAAAAGTAGTCAACTAACAAAATTCTTAC</left_flank>
        <right_flank>ATTAATATCAAAAATATTTAGCCAGTTGGCAACTTCTCGATATCTTTTAC</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTAGCTTGAACTTTATAGTGTGGAGGCTTTTTTATTGCAGGTCTTCGGAATTTTCAAATTTTAATTTAAAATAAAAAACTAGCCAGCTGGAAACCAGATTAAGTATTTTTCAACAGCCCGATGCTTTTCTGGTCTATTAGCTACTTCTAGATATTTGAAAACTGACAACAGGTTCACAGGGTGAGTACTAAAAAAACCACTTTACATCAGCTCTCGTGTGCATTATTCGCATTCAACCAAAAAAAAGAAACAATTTATTGGCTTTTGAAAAAGGATTGTGAGAGGGAAAATGATATTTCCCACTGAGAACTTTGACAGATTTTCAAGTTTTTCAGTTTTTTAGACGGATATTATGAGCTTCTACTTGAAGATGTGCAAATACAGAAACTTAAAAATACTCTCTAATTGTTTGAAACCCTAATTTACATATTTGAGCCCATTTATCTCGATTTCTGTGAACAGTATCAAAAAGTAGTCAACTAACAAAATTCTTACCATTAATATCAAAAATATTTAGCCAGTTGGCAACTTCTCGATATCTTTTACAAGAAATGAGGTATATGGGCTCAAATTTGCCAGTTCGGGGATAATTATATTAGAGTGTTAGTGGTATTTTGAAACATTTAGTGGTAAAACTGTTTTTTTTTTCAAATTTGACTATCTCAGTTCATCAAAAACCTTTTTAGATGACTAATTAAAATTATTCGCCCAACTTCTCCTATTTTCAAGTCAAAAAACATATTCTACCCTACTTCCCACATGCCACCAAAAAACTCATCCCTGATAACATCCATGCCATTTCCGGCTTCCGCAAGAAACGAACATCGAGAAGGTCATCCGGAATGTTTTTTTCTAGAAGATGTTCTTCTGCTTCATTTCTCCCTCAATTCTCATATTTCCTTCTTTCCATCCCACAATTACACCAAGATGAACGAAATTGAGAGATTGAGAAAAAACCAAAAAAAAAAGAAGAAGAAGATTTTTGAAAGTTTTTAA</canonical>
            <polymorphic>AAAATTAGCTTGAACTTTATAGTGTGGAGGCTTTTTTATTGCAGGTCTTCGGAATTTTCAAATTTTAATTTAAAATAAAAAACTAGCCAGCTGGAAACCAGATTAAGTATTTTTCAACAGCCCGATGCTTTTCTGGTCTATTAGCTACTTCTAGATATTTGAAAACTGACAACAGGTTCACAGGGTGAGTACTAAAAAAACCACTTTACATCAGCTCTCGTGTGCATTATTCGCATTCAACCAAAAAAAAGAAACAATTTATTGGCTTTTGAAAAAGGATTGTGAGAGGGAAAATGATATTTCCCACTGAGAACTTTGACAGATTTTCAAGTTTTTCAGTTTTTTAGACGGATATTATGAGCTTCTACTTGAAGATGTGCAAATACAGAAACTTAAAAATACTCTCTAATTGTTTGAAACCCTAATTTACATATTTGAGCCCATTTATCTCGATTTCTGTGAACAGTATCAAAAAGTAGTCAACTAACAAAATTCTTACYATTAATATCAAAAATATTTAGCCAGTTGGCAACTTCTCGATATCTTTTACAAGAAATGAGGTATATGGGCTCAAATTTGCCAGTTCGGGGATAATTATATTAGAGTGTTAGTGGTATTTTGAAACATTTAGTGGTAAAACTGTTTTTTTTTTCAAATTTGACTATCTCAGTTCATCAAAAACCTTTTTAGATGACTAATTAAAATTATTCGCCCAACTTCTCCTATTTTCAAGTCAAAAAACATATTCTACCCTACTTCCCACATGCCACCAAAAAACTCATCCCTGATAACATCCATGCCATTTCCGGCTTCCGCAAGAAACGAACATCGAGAAGGTCATCCGGAATGTTTTTTTCTAGAAGATGTTCTTCTGCTTCATTTCTCCCTCAATTCTCATATTTCCTTCTTTCCATCCCACAATTACACCAAGATGAACGAAATTGAGAGATTGAGAAAAAACCAAAAAAAAAAGAAGAAGAAGATTTTTGAAAGTTTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGCAAATACAGAAACTTAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAATGTTTCAAAATACCACTAACA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TGTGCAAATACAGAAACTTAAAAATACTCTCTAATTGTTTGAAACCCTAATTTACATATTTGAGCCCATTTATCTCGATTTCTGTGAACAGTATCAAAAAGTAGTCAACTAACAAAATTCTTACCATTAATATCAAAAATATTTAGCCAGTTGGCAACTTCTCGATATCTTTTACAAGAAATGAGGTATATGGGCTCAAATTTGCCAGTTCGGGGATAATTATATTAGAGTGTTAGTGGTATTTTGAAACATTT</canonical_amplicon>
		<polymorphic_amplicon>TGTGCAAATACAGAAACTTAAAAATACTCTCTAATTGTTTGAAACCCTAATTTACATATTTGAGCCCATTTATCTCGATTTCTGTGAACAGTATCAAAAAGTAGTCAACTAACAAAATTCTTACYATTAATATCAAAAATATTTAGCCAGTTGGCAACTTCTCGATATCTTTTACAAGAAATGAGGTATATGGGCTCAAATTTGCCAGTTCGGGGATAATTATATTAGAGTGTTAGTGGTATTTTGAAACATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34036</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>441212</contig_pos>
        <strand></strand>
        <context>attaatatca[A/C]aaatatttag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAACAGTATCAAAAAGTAGTCAACTAACAAAATTCTTACCATTAATATCA</left_flank>
        <right_flank>AAATATTTAGCCAGTTGGCAACTTCTCGATATCTTTTACAAGAAATGAGG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACTTTATAGTGTGGAGGCTTTTTTATTGCAGGTCTTCGGAATTTTCAAATTTTAATTTAAAATAAAAAACTAGCCAGCTGGAAACCAGATTAAGTATTTTTCAACAGCCCGATGCTTTTCTGGTCTATTAGCTACTTCTAGATATTTGAAAACTGACAACAGGTTCACAGGGTGAGTACTAAAAAAACCACTTTACATCAGCTCTCGTGTGCATTATTCGCATTCAACCAAAAAAAAGAAACAATTTATTGGCTTTTGAAAAAGGATTGTGAGAGGGAAAATGATATTTCCCACTGAGAACTTTGACAGATTTTCAAGTTTTTCAGTTTTTTAGACGGATATTATGAGCTTCTACTTGAAGATGTGCAAATACAGAAACTTAAAAATACTCTCTAATTGTTTGAAACCCTAATTTACATATTTGAGCCCATTTATCTCGATTTCTGTGAACAGTATCAAAAAGTAGTCAACTAACAAAATTCTTACCATTAATATCAAAAATATTTAGCCAGTTGGCAACTTCTCGATATCTTTTACAAGAAATGAGGTATATGGGCTCAAATTTGCCAGTTCGGGGATAATTATATTAGAGTGTTAGTGGTATTTTGAAACATTTAGTGGTAAAACTGTTTTTTTTTTCAAATTTGACTATCTCAGTTCATCAAAAACCTTTTTAGATGACTAATTAAAATTATTCGCCCAACTTCTCCTATTTTCAAGTCAAAAAACATATTCTACCCTACTTCCCACATGCCACCAAAAAACTCATCCCTGATAACATCCATGCCATTTCCGGCTTCCGCAAGAAACGAACATCGAGAAGGTCATCCGGAATGTTTTTTTCTAGAAGATGTTCTTCTGCTTCATTTCTCCCTCAATTCTCATATTTCCTTCTTTCCATCCCACAATTACACCAAGATGAACGAAATTGAGAGATTGAGAAAAAACCAAAAAAAAAAGAAGAAGAAGATTTTTGAAAGTTTTTAATAAGTTGACTT</canonical>
            <polymorphic>GAACTTTATAGTGTGGAGGCTTTTTTATTGCAGGTCTTCGGAATTTTCAAATTTTAATTTAAAATAAAAAACTAGCCAGCTGGAAACCAGATTAAGTATTTTTCAACAGCCCGATGCTTTTCTGGTCTATTAGCTACTTCTAGATATTTGAAAACTGACAACAGGTTCACAGGGTGAGTACTAAAAAAACCACTTTACATCAGCTCTCGTGTGCATTATTCGCATTCAACCAAAAAAAAGAAACAATTTATTGGCTTTTGAAAAAGGATTGTGAGAGGGAAAATGATATTTCCCACTGAGAACTTTGACAGATTTTCAAGTTTTTCAGTTTTTTAGACGGATATTATGAGCTTCTACTTGAAGATGTGCAAATACAGAAACTTAAAAATACTCTCTAATTGTTTGAAACCCTAATTTACATATTTGAGCCCATTTATCTCGATTTCTGTGAACAGTATCAAAAAGTAGTCAACTAACAAAATTCTTACCATTAATATCAMAAATATTTAGCCAGTTGGCAACTTCTCGATATCTTTTACAAGAAATGAGGTATATGGGCTCAAATTTGCCAGTTCGGGGATAATTATATTAGAGTGTTAGTGGTATTTTGAAACATTTAGTGGTAAAACTGTTTTTTTTTTCAAATTTGACTATCTCAGTTCATCAAAAACCTTTTTAGATGACTAATTAAAATTATTCGCCCAACTTCTCCTATTTTCAAGTCAAAAAACATATTCTACCCTACTTCCCACATGCCACCAAAAAACTCATCCCTGATAACATCCATGCCATTTCCGGCTTCCGCAAGAAACGAACATCGAGAAGGTCATCCGGAATGTTTTTTTCTAGAAGATGTTCTTCTGCTTCATTTCTCCCTCAATTCTCATATTTCCTTCTTTCCATCCCACAATTACACCAAGATGAACGAAATTGAGAGATTGAGAAAAAACCAAAAAAAAAAGAAGAAGAAGATTTTTGAAAGTTTTTAATAAGTTGACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGCAAATACAGAAACTTAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAATGTTTCAAAATACCACTAACA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TGTGCAAATACAGAAACTTAAAAATACTCTCTAATTGTTTGAAACCCTAATTTACATATTTGAGCCCATTTATCTCGATTTCTGTGAACAGTATCAAAAAGTAGTCAACTAACAAAATTCTTACCATTAATATCAAAAATATTTAGCCAGTTGGCAACTTCTCGATATCTTTTACAAGAAATGAGGTATATGGGCTCAAATTTGCCAGTTCGGGGATAATTATATTAGAGTGTTAGTGGTATTTTGAAACATTT</canonical_amplicon>
		<polymorphic_amplicon>TGTGCAAATACAGAAACTTAAAAATACTCTCTAATTGTTTGAAACCCTAATTTACATATTTGAGCCCATTTATCTCGATTTCTGTGAACAGTATCAAAAAGTAGTCAACTAACAAAATTCTTACCATTAATATCAMAAATATTTAGCCAGTTGGCAACTTCTCGATATCTTTTACAAGAAATGAGGTATATGGGCTCAAATTTGCCAGTTCGGGGATAATTATATTAGAGTGTTAGTGGTATTTTGAAACATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34037</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>441234</contig_pos>
        <strand></strand>
        <context>cagttggcaa[C/T]ttctcgatat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTAACAAAATTCTTACCATTAATATCAAAAATATTTAGCCAGTTGGCAA</left_flank>
        <right_flank>TTCTCGATATCTTTTACAAGAAATGAGGTATATGGGCTCAAATTTGCCAG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTATTGCAGGTCTTCGGAATTTTCAAATTTTAATTTAAAATAAAAAACTAGCCAGCTGGAAACCAGATTAAGTATTTTTCAACAGCCCGATGCTTTTCTGGTCTATTAGCTACTTCTAGATATTTGAAAACTGACAACAGGTTCACAGGGTGAGTACTAAAAAAACCACTTTACATCAGCTCTCGTGTGCATTATTCGCATTCAACCAAAAAAAAGAAACAATTTATTGGCTTTTGAAAAAGGATTGTGAGAGGGAAAATGATATTTCCCACTGAGAACTTTGACAGATTTTCAAGTTTTTCAGTTTTTTAGACGGATATTATGAGCTTCTACTTGAAGATGTGCAAATACAGAAACTTAAAAATACTCTCTAATTGTTTGAAACCCTAATTTACATATTTGAGCCCATTTATCTCGATTTCTGTGAACAGTATCAAAAAGTAGTCAACTAACAAAATTCTTACCATTAATATCAAAAATATTTAGCCAGTTGGCAACTTCTCGATATCTTTTACAAGAAATGAGGTATATGGGCTCAAATTTGCCAGTTCGGGGATAATTATATTAGAGTGTTAGTGGTATTTTGAAACATTTAGTGGTAAAACTGTTTTTTTTTTCAAATTTGACTATCTCAGTTCATCAAAAACCTTTTTAGATGACTAATTAAAATTATTCGCCCAACTTCTCCTATTTTCAAGTCAAAAAACATATTCTACCCTACTTCCCACATGCCACCAAAAAACTCATCCCTGATAACATCCATGCCATTTCCGGCTTCCGCAAGAAACGAACATCGAGAAGGTCATCCGGAATGTTTTTTTCTAGAAGATGTTCTTCTGCTTCATTTCTCCCTCAATTCTCATATTTCCTTCTTTCCATCCCACAATTACACCAAGATGAACGAAATTGAGAGATTGAGAAAAAACCAAAAAAAAAAGAAGAAGAAGATTTTTGAAAGTTTTTAATAAGTTGACTTTCGAAAAAGTGAACACCTGATG</canonical>
            <polymorphic>TTTTATTGCAGGTCTTCGGAATTTTCAAATTTTAATTTAAAATAAAAAACTAGCCAGCTGGAAACCAGATTAAGTATTTTTCAACAGCCCGATGCTTTTCTGGTCTATTAGCTACTTCTAGATATTTGAAAACTGACAACAGGTTCACAGGGTGAGTACTAAAAAAACCACTTTACATCAGCTCTCGTGTGCATTATTCGCATTCAACCAAAAAAAAGAAACAATTTATTGGCTTTTGAAAAAGGATTGTGAGAGGGAAAATGATATTTCCCACTGAGAACTTTGACAGATTTTCAAGTTTTTCAGTTTTTTAGACGGATATTATGAGCTTCTACTTGAAGATGTGCAAATACAGAAACTTAAAAATACTCTCTAATTGTTTGAAACCCTAATTTACATATTTGAGCCCATTTATCTCGATTTCTGTGAACAGTATCAAAAAGTAGTCAACTAACAAAATTCTTACCATTAATATCAAAAATATTTAGCCAGTTGGCAAYTTCTCGATATCTTTTACAAGAAATGAGGTATATGGGCTCAAATTTGCCAGTTCGGGGATAATTATATTAGAGTGTTAGTGGTATTTTGAAACATTTAGTGGTAAAACTGTTTTTTTTTTCAAATTTGACTATCTCAGTTCATCAAAAACCTTTTTAGATGACTAATTAAAATTATTCGCCCAACTTCTCCTATTTTCAAGTCAAAAAACATATTCTACCCTACTTCCCACATGCCACCAAAAAACTCATCCCTGATAACATCCATGCCATTTCCGGCTTCCGCAAGAAACGAACATCGAGAAGGTCATCCGGAATGTTTTTTTCTAGAAGATGTTCTTCTGCTTCATTTCTCCCTCAATTCTCATATTTCCTTCTTTCCATCCCACAATTACACCAAGATGAACGAAATTGAGAGATTGAGAAAAAACCAAAAAAAAAAGAAGAAGAAGATTTTTGAAAGTTTTTAATAAGTTGACTTTCGAAAAAGTGAACACCTGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGCAAATACAGAAACTTAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAATGTTTCAAAATACCACTAACA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TGTGCAAATACAGAAACTTAAAAATACTCTCTAATTGTTTGAAACCCTAATTTACATATTTGAGCCCATTTATCTCGATTTCTGTGAACAGTATCAAAAAGTAGTCAACTAACAAAATTCTTACCATTAATATCAAAAATATTTAGCCAGTTGGCAACTTCTCGATATCTTTTACAAGAAATGAGGTATATGGGCTCAAATTTGCCAGTTCGGGGATAATTATATTAGAGTGTTAGTGGTATTTTGAAACATTT</canonical_amplicon>
		<polymorphic_amplicon>TGTGCAAATACAGAAACTTAAAAATACTCTCTAATTGTTTGAAACCCTAATTTACATATTTGAGCCCATTTATCTCGATTTCTGTGAACAGTATCAAAAAGTAGTCAACTAACAAAATTCTTACCATTAATATCAAAAATATTTAGCCAGTTGGCAAYTTCTCGATATCTTTTACAAGAAATGAGGTATATGGGCTCAAATTTGCCAGTTCGGGGATAATTATATTAGAGTGTTAGTGGTATTTTGAAACATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34038</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>441363</contig_pos>
        <strand></strand>
        <context>TCAAATTTGA[C/T]TATCTCAGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGTATTTTGAAACATTTAGTGGTAAAACTGTTTTTTTTTTCAAATTTGA</left_flank>
        <right_flank>TATCTCAGTTCATCAAAAACCTTTTTAGATGACTAATTAAAATTATTCGC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTGACAACAGGTTCACAGGGTGAGTACTAAAAAAACCACTTTACATCAGCTCTCGTGTGCATTATTCGCATTCAACCAAAAAAAAGAAACAATTTATTGGCTTTTGAAAAAGGATTGTGAGAGGGAAAATGATATTTCCCACTGAGAACTTTGACAGATTTTCAAGTTTTTCAGTTTTTTAGACGGATATTATGAGCTTCTACTTGAAGATGTGCAAATACAGAAACTTAAAAATACTCTCTAATTGTTTGAAACCCTAATTTACATATTTGAGCCCATTTATCTCGATTTCTGTGAACAGTATCAAAAAGTAGTCAACTAACAAAATTCTTACCATTAATATCAAAAATATTTAGCCAGTTGGCAACTTCTCGATATCTTTTACAAGAAATGAGGTATATGGGCTCAAATTTGCCAGTTCGGGGATAATTATATTAGAGTGTTAGTGGTATTTTGAAACATTTAGTGGTAAAACTGTTTTTTTTTTCAAATTTGACTATCTCAGTTCATCAAAAACCTTTTTAGATGACTAATTAAAATTATTCGCCCAACTTCTCCTATTTTCAAGTCAAAAAACATATTCTACCCTACTTCCCACATGCCACCAAAAAACTCATCCCTGATAACATCCATGCCATTTCCGGCTTCCGCAAGAAACGAACATCGAGAAGGTCATCCGGAATGTTTTTTTCTAGAAGATGTTCTTCTGCTTCATTTCTCCCTCAATTCTCATATTTCCTTCTTTCCATCCCACAATTACACCAAGATGAACGAAATTGAGAGATTGAGAAAAAACCAAAAAAAAAAGAAGAAGAAGATTTTTGAAAGTTTTTAATAAGTTGACTTTCGAAAAAGTGAACACCTGATGATCCGCAAGAAAAACGAGAAACGTTTAATGTAAAAGATCTCTCAATATTCGTCTCTCTCTCTACTCATTCAAGAAACCGGATTTCCAAATGCTTTAAGAGGAGACAAGCAAGGGGAAAGAAGAATAGAA</canonical>
            <polymorphic>AAACTGACAACAGGTTCACAGGGTGAGTACTAAAAAAACCACTTTACATCAGCTCTCGTGTGCATTATTCGCATTCAACCAAAAAAAAGAAACAATTTATTGGCTTTTGAAAAAGGATTGTGAGAGGGAAAATGATATTTCCCACTGAGAACTTTGACAGATTTTCAAGTTTTTCAGTTTTTTAGACGGATATTATGAGCTTCTACTTGAAGATGTGCAAATACAGAAACTTAAAAATACTCTCTAATTGTTTGAAACCCTAATTTACATATTTGAGCCCATTTATCTCGATTTCTGTGAACAGTATCAAAAAGTAGTCAACTAACAAAATTCTTACCATTAATATCAAAAATATTTAGCCAGTTGGCAACTTCTCGATATCTTTTACAAGAAATGAGGTATATGGGCTCAAATTTGCCAGTTCGGGGATAATTATATTAGAGTGTTAGTGGTATTTTGAAACATTTAGTGGTAAAACTGTTTTTTTTTTCAAATTTGAYTATCTCAGTTCATCAAAAACCTTTTTAGATGACTAATTAAAATTATTCGCCCAACTTCTCCTATTTTCAAGTCAAAAAACATATTCTACCCTACTTCCCACATGCCACCAAAAAACTCATCCCTGATAACATCCATGCCATTTCCGGCTTCCGCAAGAAACGAACATCGAGAAGGTCATCCGGAATGTTTTTTTCTAGAAGATGTTCTTCTGCTTCATTTCTCCCTCAATTCTCATATTTCCTTCTTTCCATCCCACAATTACACCAAGATGAACGAAATTGAGAGATTGAGAAAAAACCAAAAAAAAAAGAAGAAGAAGATTTTTGAAAGTTTTTAATAAGTTGACTTTCGAAAAAGTGAACACCTGATGATCCGCAAGAAAAACGAGAAACGTTTAATGTAAAAGATCTCTCAATATTCGTCTCTCTCTCTACTCATTCAAGAAACCGGATTTCCAAATGCTTTAAGAGGAGACAAGCAAGGGGAAAGAAGAATAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTAGTGGTATTTTGAAACATTTA</pcr_primer_p1>
		<pcr_primer_p2>GATGTTATCAGGGATGAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>190</pcr_amplicon_size>
		<canonical_amplicon>TGTTAGTGGTATTTTGAAACATTTAGTGGTAAAACTGTTTTTTTTTTCAAATTTGACTATCTCAGTTCATCAAAAACCTTTTTAGATGACTAATTAAAATTATTCGCCCAACTTCTCCTATTTTCAAGTCAAAAAACATATTCTACCCTACTTCCCACATGCCACCAAAAAACTCATCCCTGATAACATC</canonical_amplicon>
		<polymorphic_amplicon>TGTTAGTGGTATTTTGAAACATTTAGTGGTAAAACTGTTTTTTTTTTCAAATTTGAYTATCTCAGTTCATCAAAAACCTTTTTAGATGACTAATTAAAATTATTCGCCCAACTTCTCCTATTTTCAAGTCAAAAAACATATTCTACCCTACTTCCCACATGCCACCAAAAAACTCATCCCTGATAACATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34039</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>441529</contig_pos>
        <strand></strand>
        <context>AGAAACGAAC[A/T]TCGAGAAGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCATCCCTGATAACATCCATGCCATTTCCGGCTTCCGCAAGAAACGAAC</left_flank>
        <right_flank>TCGAGAAGGTCATCCGGAATGTTTTTTTCTAGAAGATGTTCTTCTGCTTC</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTTTTCAGTTTTTTAGACGGATATTATGAGCTTCTACTTGAAGATGTGCAAATACAGAAACTTAAAAATACTCTCTAATTGTTTGAAACCCTAATTTACATATTTGAGCCCATTTATCTCGATTTCTGTGAACAGTATCAAAAAGTAGTCAACTAACAAAATTCTTACCATTAATATCAAAAATATTTAGCCAGTTGGCAACTTCTCGATATCTTTTACAAGAAATGAGGTATATGGGCTCAAATTTGCCAGTTCGGGGATAATTATATTAGAGTGTTAGTGGTATTTTGAAACATTTAGTGGTAAAACTGTTTTTTTTTTCAAATTTGACTATCTCAGTTCATCAAAAACCTTTTTAGATGACTAATTAAAATTATTCGCCCAACTTCTCCTATTTTCAAGTCAAAAAACATATTCTACCCTACTTCCCACATGCCACCAAAAAACTCATCCCTGATAACATCCATGCCATTTCCGGCTTCCGCAAGAAACGAACATCGAGAAGGTCATCCGGAATGTTTTTTTCTAGAAGATGTTCTTCTGCTTCATTTCTCCCTCAATTCTCATATTTCCTTCTTTCCATCCCACAATTACACCAAGATGAACGAAATTGAGAGATTGAGAAAAAACCAAAAAAAAAAGAAGAAGAAGATTTTTGAAAGTTTTTAATAAGTTGACTTTCGAAAAAGTGAACACCTGATGATCCGCAAGAAAAACGAGAAACGTTTAATGTAAAAGATCTCTCAATATTCGTCTCTCTCTCTACTCATTCAAGAAACCGGATTTCCAAATGCTTTAAGAGGAGACAAGCAAGGGGAAAGAAGAATAGAATAGCATAAAGTAGCTGCTGGACTAATACTCAATGTCTAGTACGTTAAACGAACGCCGTTGGTCGGTCGCCAACCGATTGACTATAATGTTGTACGGTACATAACAAGGAATTAAGCGAACGGGATGATGGGGGAGAACGGGAGAGGAAAAAAAGAGATGAAAGAAA</canonical>
            <polymorphic>AAGTTTTTCAGTTTTTTAGACGGATATTATGAGCTTCTACTTGAAGATGTGCAAATACAGAAACTTAAAAATACTCTCTAATTGTTTGAAACCCTAATTTACATATTTGAGCCCATTTATCTCGATTTCTGTGAACAGTATCAAAAAGTAGTCAACTAACAAAATTCTTACCATTAATATCAAAAATATTTAGCCAGTTGGCAACTTCTCGATATCTTTTACAAGAAATGAGGTATATGGGCTCAAATTTGCCAGTTCGGGGATAATTATATTAGAGTGTTAGTGGTATTTTGAAACATTTAGTGGTAAAACTGTTTTTTTTTTCAAATTTGACTATCTCAGTTCATCAAAAACCTTTTTAGATGACTAATTAAAATTATTCGCCCAACTTCTCCTATTTTCAAGTCAAAAAACATATTCTACCCTACTTCCCACATGCCACCAAAAAACTCATCCCTGATAACATCCATGCCATTTCCGGCTTCCGCAAGAAACGAACWTCGAGAAGGTCATCCGGAATGTTTTTTTCTAGAAGATGTTCTTCTGCTTCATTTCTCCCTCAATTCTCATATTTCCTTCTTTCCATCCCACAATTACACCAAGATGAACGAAATTGAGAGATTGAGAAAAAACCAAAAAAAAAAGAAGAAGAAGATTTTTGAAAGTTTTTAATAAGTTGACTTTCGAAAAAGTGAACACCTGATGATCCGCAAGAAAAACGAGAAACGTTTAATGTAAAAGATCTCTCAATATTCGTCTCTCTCTCTACTCATTCAAGAAACCGGATTTCCAAATGCTTTAAGAGGAGACAAGCAAGGGGAAAGAAGAATAGAATAGCATAAAGTAGCTGCTGGACTAATACTCAATGTCTAGTACGTTAAACGAACGCCGTTGGTCGGTCGCCAACCGATTGACTATAATGTTGTACGGTACATAACAAGGAATTAAGCGAACGGGATGATGGGGGAGAACGGGAGAGGAAAAAAAGAGATGAAAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTCTACCCTACTTCCCACAT</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAAAATCTTCTTCTTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATTCTACCCTACTTCCCACATGCCACCAAAAAACTCATCCCTGATAACATCCATGCCATTTCCGGCTTCCGCAAGAAACGAACATCGAGAAGGTCATCCGGAATGTTTTTTTCTAGAAGATGTTCTTCTGCTTCATTTCTCCCTCAATTCTCATATTTCCTTCTTTCCATCCCACAATTACACCAAGATGAACGAAATTGAGAGATTGAGAAAAAACCAAAAAAAAAAGAAGAAGAAGATTTTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATATTCTACCCTACTTCCCACATGCCACCAAAAAACTCATCCCTGATAACATCCATGCCATTTCCGGCTTCCGCAAGAAACGAACWTCGAGAAGGTCATCCGGAATGTTTTTTTCTAGAAGATGTTCTTCTGCTTCATTTCTCCCTCAATTCTCATATTTCCTTCTTTCCATCCCACAATTACACCAAGATGAACGAAATTGAGAGATTGAGAAAAAACCAAAAAAAAAAGAAGAAGAAGATTTTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34040</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>441630</contig_pos>
        <strand></strand>
        <context>CAATTACACC[A/G]AGATGAACGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTCTCCCTCAATTCTCATATTTCCTTCTTTCCATCCCACAATTACACC</left_flank>
        <right_flank>AGATGAACGAAATTGAGAGATTGAGAAAAAACCAAAAAAAAAAGAAGAAG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATATTTGAGCCCATTTATCTCGATTTCTGTGAACAGTATCAAAAAGTAGTCAACTAACAAAATTCTTACCATTAATATCAAAAATATTTAGCCAGTTGGCAACTTCTCGATATCTTTTACAAGAAATGAGGTATATGGGCTCAAATTTGCCAGTTCGGGGATAATTATATTAGAGTGTTAGTGGTATTTTGAAACATTTAGTGGTAAAACTGTTTTTTTTTTCAAATTTGACTATCTCAGTTCATCAAAAACCTTTTTAGATGACTAATTAAAATTATTCGCCCAACTTCTCCTATTTTCAAGTCAAAAAACATATTCTACCCTACTTCCCACATGCCACCAAAAAACTCATCCCTGATAACATCCATGCCATTTCCGGCTTCCGCAAGAAACGAACATCGAGAAGGTCATCCGGAATGTTTTTTTCTAGAAGATGTTCTTCTGCTTCATTTCTCCCTCAATTCTCATATTTCCTTCTTTCCATCCCACAATTACACCAAGATGAACGAAATTGAGAGATTGAGAAAAAACCAAAAAAAAAAGAAGAAGAAGATTTTTGAAAGTTTTTAATAAGTTGACTTTCGAAAAAGTGAACACCTGATGATCCGCAAGAAAAACGAGAAACGTTTAATGTAAAAGATCTCTCAATATTCGTCTCTCTCTCTACTCATTCAAGAAACCGGATTTCCAAATGCTTTAAGAGGAGACAAGCAAGGGGAAAGAAGAATAGAATAGCATAAAGTAGCTGCTGGACTAATACTCAATGTCTAGTACGTTAAACGAACGCCGTTGGTCGGTCGCCAACCGATTGACTATAATGTTGTACGGTACATAACAAGGAATTAAGCGAACGGGATGATGGGGGAGAACGGGAGAGGAAAAAAAGAGATGAAAGAAAAAAAGCGAGGCTTCAGGTTGGAAGACTGGAAATATAGTGGAACAAGCACGTGGAAAAAAAGGGGTGCAGGAAAAAGTGCACGGGTGTGGATTTTGACAGGG</canonical>
            <polymorphic>CATATTTGAGCCCATTTATCTCGATTTCTGTGAACAGTATCAAAAAGTAGTCAACTAACAAAATTCTTACCATTAATATCAAAAATATTTAGCCAGTTGGCAACTTCTCGATATCTTTTACAAGAAATGAGGTATATGGGCTCAAATTTGCCAGTTCGGGGATAATTATATTAGAGTGTTAGTGGTATTTTGAAACATTTAGTGGTAAAACTGTTTTTTTTTTCAAATTTGACTATCTCAGTTCATCAAAAACCTTTTTAGATGACTAATTAAAATTATTCGCCCAACTTCTCCTATTTTCAAGTCAAAAAACATATTCTACCCTACTTCCCACATGCCACCAAAAAACTCATCCCTGATAACATCCATGCCATTTCCGGCTTCCGCAAGAAACGAACATCGAGAAGGTCATCCGGAATGTTTTTTTCTAGAAGATGTTCTTCTGCTTCATTTCTCCCTCAATTCTCATATTTCCTTCTTTCCATCCCACAATTACACCRAGATGAACGAAATTGAGAGATTGAGAAAAAACCAAAAAAAAAAGAAGAAGAAGATTTTTGAAAGTTTTTAATAAGTTGACTTTCGAAAAAGTGAACACCTGATGATCCGCAAGAAAAACGAGAAACGTTTAATGTAAAAGATCTCTCAATATTCGTCTCTCTCTCTACTCATTCAAGAAACCGGATTTCCAAATGCTTTAAGAGGAGACAAGCAAGGGGAAAGAAGAATAGAATAGCATAAAGTAGCTGCTGGACTAATACTCAATGTCTAGTACGTTAAACGAACGCCGTTGGTCGGTCGCCAACCGATTGACTATAATGTTGTACGGTACATAACAAGGAATTAAGCGAACGGGATGATGGGGGAGAACGGGAGAGGAAAAAAAGAGATGAAAGAAAAAAAGCGAGGCTTCAGGTTGGAAGACTGGAAATATAGTGGAACAAGCACGTGGAAAAAAAGGGGTGCAGGAAAAAGTGCACGGGTGTGGATTTTGACAGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTCTACCCTACTTCCCACAT</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAAAATCTTCTTCTTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATTCTACCCTACTTCCCACATGCCACCAAAAAACTCATCCCTGATAACATCCATGCCATTTCCGGCTTCCGCAAGAAACGAACATCGAGAAGGTCATCCGGAATGTTTTTTTCTAGAAGATGTTCTTCTGCTTCATTTCTCCCTCAATTCTCATATTTCCTTCTTTCCATCCCACAATTACACCAAGATGAACGAAATTGAGAGATTGAGAAAAAACCAAAAAAAAAAGAAGAAGAAGATTTTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATATTCTACCCTACTTCCCACATGCCACCAAAAAACTCATCCCTGATAACATCCATGCCATTTCCGGCTTCCGCAAGAAACGAACATCGAGAAGGTCATCCGGAATGTTTTTTTCTAGAAGATGTTCTTCTGCTTCATTTCTCCCTCAATTCTCATATTTCCTTCTTTCCATCCCACAATTACACCRAGATGAACGAAATTGAGAGATTGAGAAAAAACCAAAAAAAAAAGAAGAAGAAGATTTTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34041</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>455954</contig_pos>
        <strand>+</strand>
        <context>CGGTTTTGGA[A/C]AATACCAACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGA</left_flank>
        <right_flank>AATACCAACCGTCAACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAGAGGTCTTCTAGCTGAAATCCTAGCGAAGAAGACGTTGCCAACAATTGCGGAAACCGTTTATCTGGGTGCAGGACAAATCTGGAATCAAGATTCTTCGTGGAATGCATCAGCTTCAACAGTCAGCTGCCCTCCCTCATCTTCGAATTCCGTCTACACAGATGAGATTCTAGAATATGTTCCTCTAGAAGGTGAAGGAATTGATACGAGAAACGGGATGGATTCAAGAAGATCAGAATCCAGTACTGGTACAACTGCTCAAAGAAACTCCCCAAGCAGAGTCGAGGAGTCTTTTGGAGAAAATGCTACAGTTGTTGAAGGTTTTGGAGTAGGAAACAACTTTGCGTTGAACACCCCGAGTTATCCAATTGGAGTCGATTTTGACTTCCAGAGAGTAAGTAGAAAAATAATTTTTCGAGAAATGAGAAATACGATTTTTTCAGGCTCTTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGAAAATACCAACCGTCAACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAATCACACTTCAAACATCTCACAGGTAAGGCTCATTTTTAAAACAGGCCGGTAACACAA</canonical>
            <polymorphic>TCAAGAGGTCTTCTAGCTGAAATCCTAGCGAAGAAGACGTTGCCAACAATTGCGGAAACCGTTTATCTGGGTGCAGGACAAATCTGGAATCAAGATTCTTCGTGGAATGCATCAGCTTCAACAGTCAGCTGCCCTCCCTCATCTTCGAATTCCGTCTACACAGATGAGATTCTAGAATATGTTCCTCTAGAAGGTGAAGGAATTGATACGAGAAACGGGATGGATTCAAGAAGATCAGAATCCAGTACTGGTACAACTGCTCAAAGAAACTCCCCAAGCAGAGTCGAGGAGTCTTTTGGAGAAAATGCTACAGTTGTTGAAGGTTTTGGAGTAGGAAACAACTTTGCGTTGAACACCCCGAGTTATCCAATTGGAGTCGATTTTGACTTCCAGAGAGTAAGTAGAAAAATAATTTTTCGAGAAATGAGAAATACGATTTTTTCAGGCTCTTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGAMAATACCAACCGTCAACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAATCACACTTCAAACATCTCACAGGTAAGGCTCATTTTTAAAACAGGCCGGTAACACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTGGAGTAGGAAACAACTTT</pcr_primer_p1>
		<pcr_primer_p2>CATTTTAGTGGAATAAGATTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>GTTTTGGAGTAGGAAACAACTTTGCGTTGAACACCCCGAGTTATCCAATTGGAGTCGATTTTGACTTCCAGAGAGTAAGTAGAAAAATAATTTTTCGAGAAATGAGAAATACGATTTTTTCAGGCTCTTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGAAAATACCAACCGTCAACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATG</canonical_amplicon>
		<polymorphic_amplicon>GTTTTGGAGTAGGAAACAACTTTGCGTTGAACACCCCGAGTTATCCAATTGGAGTCGATTTTGACTTCCAGAGAGTAAGTAGAAAAATAATTTTTCGAGAAATGAGAAATACGATTTTTTCAGGCTCTTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGAMAATACCAACCGTCAACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34042</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>455989</contig_pos>
        <strand>+</strand>
        <context>AGGTAAGACT[C/T]ATCTTCTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAACCGGTTTTGGAAAATACCAACCGTCAACCAATGCACAGGTAAGACT</left_flank>
        <right_flank>ATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGTTGCCAACAATTGCGGAAACCGTTTATCTGGGTGCAGGACAAATCTGGAATCAAGATTCTTCGTGGAATGCATCAGCTTCAACAGTCAGCTGCCCTCCCTCATCTTCGAATTCCGTCTACACAGATGAGATTCTAGAATATGTTCCTCTAGAAGGTGAAGGAATTGATACGAGAAACGGGATGGATTCAAGAAGATCAGAATCCAGTACTGGTACAACTGCTCAAAGAAACTCCCCAAGCAGAGTCGAGGAGTCTTTTGGAGAAAATGCTACAGTTGTTGAAGGTTTTGGAGTAGGAAACAACTTTGCGTTGAACACCCCGAGTTATCCAATTGGAGTCGATTTTGACTTCCAGAGAGTAAGTAGAAAAATAATTTTTCGAGAAATGAGAAATACGATTTTTTCAGGCTCTTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGAAAATACCAACCGTCAACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAATCACACTTCAAACATCTCACAGGTAAGGCTCATTTTTAAAACAGGCCGGTAACACAAATTATTTTTTAGATGTCTTCGCCTCCTCCGAATGC</canonical>
            <polymorphic>GACGTTGCCAACAATTGCGGAAACCGTTTATCTGGGTGCAGGACAAATCTGGAATCAAGATTCTTCGTGGAATGCATCAGCTTCAACAGTCAGCTGCCCTCCCTCATCTTCGAATTCCGTCTACACAGATGAGATTCTAGAATATGTTCCTCTAGAAGGTGAAGGAATTGATACGAGAAACGGGATGGATTCAAGAAGATCAGAATCCAGTACTGGTACAACTGCTCAAAGAAACTCCCCAAGCAGAGTCGAGGAGTCTTTTGGAGAAAATGCTACAGTTGTTGAAGGTTTTGGAGTAGGAAACAACTTTGCGTTGAACACCCCGAGTTATCCAATTGGAGTCGATTTTGACTTCCAGAGAGTAAGTAGAAAAATAATTTTTCGAGAAATGAGAAATACGATTTTTTCAGGCTCTTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGAAAATACCAACCGTCAACCAATGCACAGGTAAGACTYATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAATCACACTTCAAACATCTCACAGGTAAGGCTCATTTTTAAAACAGGCCGGTAACACAAATTATTTTTTAGATGTCTTCGCCTCCTCCGAATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGAGAAATGAGAAATACGA</pcr_primer_p1>
		<pcr_primer_p2>GCTACTCAGCGAATTTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>TTCGAGAAATGAGAAATACGATTTTTTCAGGCTCTTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGAAAATACCAACCGTCAACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGC</canonical_amplicon>
		<polymorphic_amplicon>TTCGAGAAATGAGAAATACGATTTTTTCAGGCTCTTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGAAAATACCAACCGTCAACCAATGCACAGGTAAGACTYATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34043</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>456044</contig_pos>
        <strand>+</strand>
        <context>ATGTTTCCAA[G/T]GTTATGTATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAA</left_flank>
        <right_flank>GTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAGATTCTTCGTGGAATGCATCAGCTTCAACAGTCAGCTGCCCTCCCTCATCTTCGAATTCCGTCTACACAGATGAGATTCTAGAATATGTTCCTCTAGAAGGTGAAGGAATTGATACGAGAAACGGGATGGATTCAAGAAGATCAGAATCCAGTACTGGTACAACTGCTCAAAGAAACTCCCCAAGCAGAGTCGAGGAGTCTTTTGGAGAAAATGCTACAGTTGTTGAAGGTTTTGGAGTAGGAAACAACTTTGCGTTGAACACCCCGAGTTATCCAATTGGAGTCGATTTTGACTTCCAGAGAGTAAGTAGAAAAATAATTTTTCGAGAAATGAGAAATACGATTTTTTCAGGCTCTTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGAAAATACCAACCGTCAACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAATCACACTTCAAACATCTCACAGGTAAGGCTCATTTTTAAAACAGGCCGGTAACACAAATTATTTTTTAGATGTCTTCGCCTCCTCCGAATGCGATTTCGACACGTGAGTTTCATTTGAAAAGTCTGAATGGAAACTCATAAATCGAA</canonical>
            <polymorphic>CAAGATTCTTCGTGGAATGCATCAGCTTCAACAGTCAGCTGCCCTCCCTCATCTTCGAATTCCGTCTACACAGATGAGATTCTAGAATATGTTCCTCTAGAAGGTGAAGGAATTGATACGAGAAACGGGATGGATTCAAGAAGATCAGAATCCAGTACTGGTACAACTGCTCAAAGAAACTCCCCAAGCAGAGTCGAGGAGTCTTTTGGAGAAAATGCTACAGTTGTTGAAGGTTTTGGAGTAGGAAACAACTTTGCGTTGAACACCCCGAGTTATCCAATTGGAGTCGATTTTGACTTCCAGAGAGTAAGTAGAAAAATAATTTTTCGAGAAATGAGAAATACGATTTTTTCAGGCTCTTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGAAAATACCAACCGTCAACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAKGTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAATCACACTTCAAACATCTCACAGGTAAGGCTCATTTTTAAAACAGGCCGGTAACACAAATTATTTTTTAGATGTCTTCGCCTCCTCCGAATGCGATTTCGACACGTGAGTTTCATTTGAAAAGTCTGAATGGAAACTCATAAATCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACCAATGCACAGGTAAGACT</pcr_primer_p1>
		<pcr_primer_p2>CAGCTTTCAGTATCATCCTCTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTG</canonical_amplicon>
		<polymorphic_amplicon>AACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAKGTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34044</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>456078</contig_pos>
        <strand>+</strand>
        <context>TACGAAACAC[A/G]GGARGGGAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACAC</left_flank>
        <right_flank>GGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGCTGCCCTCCCTCATCTTCGAATTCCGTCTACACAGATGAGATTCTAGAATATGTTCCTCTAGAAGGTGAAGGAATTGATACGAGAAACGGGATGGATTCAAGAAGATCAGAATCCAGTACTGGTACAACTGCTCAAAGAAACTCCCCAAGCAGAGTCGAGGAGTCTTTTGGAGAAAATGCTACAGTTGTTGAAGGTTTTGGAGTAGGAAACAACTTTGCGTTGAACACCCCGAGTTATCCAATTGGAGTCGATTTTGACTTCCAGAGAGTAAGTAGAAAAATAATTTTTCGAGAAATGAGAAATACGATTTTTTCAGGCTCTTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGAAAATACCAACCGTCAACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAATCACACTTCAAACATCTCACAGGTAAGGCTCATTTTTAAAACAGGCCGGTAACACAAATTATTTTTTAGATGTCTTCGCCTCCTCCGAATGCGATTTCGACACGTGAGTTTCATTTGAAAAGTCTGAATGGAAACTCATAAATCGAAAAAATTCAGATCATTCAACGCTCTCCATCGCACC</canonical>
            <polymorphic>TCAGCTGCCCTCCCTCATCTTCGAATTCCGTCTACACAGATGAGATTCTAGAATATGTTCCTCTAGAAGGTGAAGGAATTGATACGAGAAACGGGATGGATTCAAGAAGATCAGAATCCAGTACTGGTACAACTGCTCAAAGAAACTCCCCAAGCAGAGTCGAGGAGTCTTTTGGAGAAAATGCTACAGTTGTTGAAGGTTTTGGAGTAGGAAACAACTTTGCGTTGAACACCCCGAGTTATCCAATTGGAGTCGATTTTGACTTCCAGAGAGTAAGTAGAAAAATAATTTTTCGAGAAATGAGAAATACGATTTTTTCAGGCTCTTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGAAAATACCAACCGTCAACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACRGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAATCACACTTCAAACATCTCACAGGTAAGGCTCATTTTTAAAACAGGCCGGTAACACAAATTATTTTTTAGATGTCTTCGCCTCCTCCGAATGCGATTTCGACACGTGAGTTTCATTTGAAAAGTCTGAATGGAAACTCATAAATCGAAAAAATTCAGATCATTCAACGCTCTCCATCGCACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCAATGCACAGGTAAGACT</pcr_primer_p1>
		<pcr_primer_p2>CAGCTTTCAGTATCATCCTCTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTG</canonical_amplicon>
		<polymorphic_amplicon>AACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACRGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34045</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>456082</contig_pos>
        <strand>+</strand>
        <context>AAACACRGGA[A/G]GGGAGGGGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGA</left_flank>
        <right_flank>GGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGCCCTCCCTCATCTTCGAATTCCGTCTACACAGATGAGATTCTAGAATATGTTCCTCTAGAAGGTGAAGGAATTGATACGAGAAACGGGATGGATTCAAGAAGATCAGAATCCAGTACTGGTACAACTGCTCAAAGAAACTCCCCAAGCAGAGTCGAGGAGTCTTTTGGAGAAAATGCTACAGTTGTTGAAGGTTTTGGAGTAGGAAACAACTTTGCGTTGAACACCCCGAGTTATCCAATTGGAGTCGATTTTGACTTCCAGAGAGTAAGTAGAAAAATAATTTTTCGAGAAATGAGAAATACGATTTTTTCAGGCTCTTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGAAAATACCAACCGTCAACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAATCACACTTCAAACATCTCACAGGTAAGGCTCATTTTTAAAACAGGCCGGTAACACAAATTATTTTTTAGATGTCTTCGCCTCCTCCGAATGCGATTTCGACACGTGAGTTTCATTTGAAAAGTCTGAATGGAAACTCATAAATCGAAAAAATTCAGATCATTCAACGCTCTCCATCGCACCACCG</canonical>
            <polymorphic>CTGCCCTCCCTCATCTTCGAATTCCGTCTACACAGATGAGATTCTAGAATATGTTCCTCTAGAAGGTGAAGGAATTGATACGAGAAACGGGATGGATTCAAGAAGATCAGAATCCAGTACTGGTACAACTGCTCAAAGAAACTCCCCAAGCAGAGTCGAGGAGTCTTTTGGAGAAAATGCTACAGTTGTTGAAGGTTTTGGAGTAGGAAACAACTTTGCGTTGAACACCCCGAGTTATCCAATTGGAGTCGATTTTGACTTCCAGAGAGTAAGTAGAAAAATAATTTTTCGAGAAATGAGAAATACGATTTTTTCAGGCTCTTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGAAAATACCAACCGTCAACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGARGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAATCACACTTCAAACATCTCACAGGTAAGGCTCATTTTTAAAACAGGCCGGTAACACAAATTATTTTTTAGATGTCTTCGCCTCCTCCGAATGCGATTTCGACACGTGAGTTTCATTTGAAAAGTCTGAATGGAAACTCATAAATCGAAAAAATTCAGATCATTCAACGCTCTCCATCGCACCACCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCAATGCACAGGTAAGACT</pcr_primer_p1>
		<pcr_primer_p2>CAGCTTTCAGTATCATCCTCTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTG</canonical_amplicon>
		<polymorphic_amplicon>AACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGARGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34046</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>456110</contig_pos>
        <strand></strand>
        <context>CGTATACATG[G/A]ATTTGGATCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATG</left_flank>
        <right_flank>ATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACACAGATGAGATTCTAGAATATGTTCCTCTAGAAGGTGAAGGAATTGATACGAGAAACGGGATGGATTCAAGAAGATCAGAATCCAGTACTGGTACAACTGCTCAAAGAAACTCCCCAAGCAGAGTCGAGGAGTCTTTTGGAGAAAATGCTACAGTTGTTGAAGGTTTTGGAGTAGGAAACAACTTTGCGTTGAACACCCCGAGTTATCCAATTGGAGTCGATTTTGACTTCCAGAGAGTAAGTAGAAAAATAATTTTTCGAGAAATGAGAAATACGATTTTTTCAGGCTCTTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGAAAATACCAACCGTCAACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAATCACACTTCAAACATCTCACAGGTAAGGCTCATTTTTAAAACAGGCCGGTAACACAAATTATTTTTTAGATGTCTTCGCCTCCTCCGAATGCGATTTCGACACGTGAGTTTCATTTGAAAAGTCTGAATGGAAACTCATAAATCGAAAAAATTCAGATCATTCAACGCTCTCCATCGCACCACCGCCAAGAATGATATCATCAATCATGAACC</canonical>
            <polymorphic>TACACAGATGAGATTCTAGAATATGTTCCTCTAGAAGGTGAAGGAATTGATACGAGAAACGGGATGGATTCAAGAAGATCAGAATCCAGTACTGGTACAACTGCTCAAAGAAACTCCCCAAGCAGAGTCGAGGAGTCTTTTGGAGAAAATGCTACAGTTGTTGAAGGTTTTGGAGTAGGAAACAACTTTGCGTTGAACACCCCGAGTTATCCAATTGGAGTCGATTTTGACTTCCAGAGAGTAAGTAGAAAAATAATTTTTCGAGAAATGAGAAATACGATTTTTTCAGGCTCTTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGAAAATACCAACCGTCAACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGRATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAATCACACTTCAAACATCTCACAGGTAAGGCTCATTTTTAAAACAGGCCGGTAACACAAATTATTTTTTAGATGTCTTCGCCTCCTCCGAATGCGATTTCGACACGTGAGTTTCATTTGAAAAGTCTGAATGGAAACTCATAAATCGAAAAAATTCAGATCATTCAACGCTCTCCATCGCACCACCGCCAAGAATGATATCATCAATCATGAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATNNNNATC</site>
                <isoschizomers>
                    <enzyme>BsaBI</enzyme>
                    <enzyme>Bse8I</enzyme>
                    <enzyme>BseJI</enzyme>
                    <enzyme>BsiBI</enzyme>
                    <enzyme>BsrBRI</enzyme>
                    <enzyme>MamI</enzyme>
                </isoschizomers>
                <canonical_bands>496 423 81</canonical_bands>
                <polymorphic_bands>919 81</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCTAAAATCATTACGAAACAC</pcr_primer_p1>
		<pcr_primer_p2>GTTTGAAGGTGGGGATTAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAAC</canonical_amplicon>
		<polymorphic_amplicon>TTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGRATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34047</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>456122</contig_pos>
        <strand>+</strand>
        <context>TTTGGATCGA[A/G]ATTTYGCGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGA</left_flank>
        <right_flank>ATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCTAGAATATGTTCCTCTAGAAGGTGAAGGAATTGATACGAGAAACGGGATGGATTCAAGAAGATCAGAATCCAGTACTGGTACAACTGCTCAAAGAAACTCCCCAAGCAGAGTCGAGGAGTCTTTTGGAGAAAATGCTACAGTTGTTGAAGGTTTTGGAGTAGGAAACAACTTTGCGTTGAACACCCCGAGTTATCCAATTGGAGTCGATTTTGACTTCCAGAGAGTAAGTAGAAAAATAATTTTTCGAGAAATGAGAAATACGATTTTTTCAGGCTCTTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGAAAATACCAACCGTCAACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAATCACACTTCAAACATCTCACAGGTAAGGCTCATTTTTAAAACAGGCCGGTAACACAAATTATTTTTTAGATGTCTTCGCCTCCTCCGAATGCGATTTCGACACGTGAGTTTCATTTGAAAAGTCTGAATGGAAACTCATAAATCGAAAAAATTCAGATCATTCAACGCTCTCCATCGCACCACCGCCAAGAATGATATCATCAATCATGAACCATTTGTCAACAC</canonical>
            <polymorphic>ATTCTAGAATATGTTCCTCTAGAAGGTGAAGGAATTGATACGAGAAACGGGATGGATTCAAGAAGATCAGAATCCAGTACTGGTACAACTGCTCAAAGAAACTCCCCAAGCAGAGTCGAGGAGTCTTTTGGAGAAAATGCTACAGTTGTTGAAGGTTTTGGAGTAGGAAACAACTTTGCGTTGAACACCCCGAGTTATCCAATTGGAGTCGATTTTGACTTCCAGAGAGTAAGTAGAAAAATAATTTTTCGAGAAATGAGAAATACGATTTTTTCAGGCTCTTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGAAAATACCAACCGTCAACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGARATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAATCACACTTCAAACATCTCACAGGTAAGGCTCATTTTTAAAACAGGCCGGTAACACAAATTATTTTTTAGATGTCTTCGCCTCCTCCGAATGCGATTTCGACACGTGAGTTTCATTTGAAAAGTCTGAATGGAAACTCATAAATCGAAAAAATTCAGATCATTCAACGCTCTCCATCGCACCACCGCCAAGAATGATATCATCAATCATGAACCATTTGTCAACAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>247 243 241 163 40 28 19 15 4</canonical_bands>
                <polymorphic_bands>488 243 163 40 28 19 15 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCTAAAATCATTACGAAACAC</pcr_primer_p1>
		<pcr_primer_p2>GTTTGAAGGTGGGGATTAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAAC</canonical_amplicon>
		<polymorphic_amplicon>TTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGARATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34048</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>456127</contig_pos>
        <strand>+</strand>
        <context>ATCGARATTT[C/T]GCGCACTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTT</left_flank>
        <right_flank>GCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAATATGTTCCTCTAGAAGGTGAAGGAATTGATACGAGAAACGGGATGGATTCAAGAAGATCAGAATCCAGTACTGGTACAACTGCTCAAAGAAACTCCCCAAGCAGAGTCGAGGAGTCTTTTGGAGAAAATGCTACAGTTGTTGAAGGTTTTGGAGTAGGAAACAACTTTGCGTTGAACACCCCGAGTTATCCAATTGGAGTCGATTTTGACTTCCAGAGAGTAAGTAGAAAAATAATTTTTCGAGAAATGAGAAATACGATTTTTTCAGGCTCTTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGAAAATACCAACCGTCAACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAATCACACTTCAAACATCTCACAGGTAAGGCTCATTTTTAAAACAGGCCGGTAACACAAATTATTTTTTAGATGTCTTCGCCTCCTCCGAATGCGATTTCGACACGTGAGTTTCATTTGAAAAGTCTGAATGGAAACTCATAAATCGAAAAAATTCAGATCATTCAACGCTCTCCATCGCACCACCGCCAAGAATGATATCATCAATCATGAACCATTTGTCAACACAAATG</canonical>
            <polymorphic>AGAATATGTTCCTCTAGAAGGTGAAGGAATTGATACGAGAAACGGGATGGATTCAAGAAGATCAGAATCCAGTACTGGTACAACTGCTCAAAGAAACTCCCCAAGCAGAGTCGAGGAGTCTTTTGGAGAAAATGCTACAGTTGTTGAAGGTTTTGGAGTAGGAAACAACTTTGCGTTGAACACCCCGAGTTATCCAATTGGAGTCGATTTTGACTTCCAGAGAGTAAGTAGAAAAATAATTTTTCGAGAAATGAGAAATACGATTTTTTCAGGCTCTTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGAAAATACCAACCGTCAACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTYGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAATCACACTTCAAACATCTCACAGGTAAGGCTCATTTTTAAAACAGGCCGGTAACACAAATTATTTTTTAGATGTCTTCGCCTCCTCCGAATGCGATTTCGACACGTGAGTTTCATTTGAAAAGTCTGAATGGAAACTCATAAATCGAAAAAATTCAGATCATTCAACGCTCTCCATCGCACCACCGCCAAGAATGATATCATCAATCATGAACCATTTGTCAACACAAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 396 81 20 2</canonical_bands>
                <polymorphic_bands>521 396 81 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCTAAAATCATTACGAAACAC</pcr_primer_p1>
		<pcr_primer_p2>GTTTGAAGGTGGGGATTAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAAC</canonical_amplicon>
		<polymorphic_amplicon>TTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTYGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34049</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>456192</contig_pos>
        <strand>+</strand>
        <context>CGTTAATTGG[A/T]CAGAGAGGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGG</left_flank>
        <right_flank>CAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCCAGTACTGGTACAACTGCTCAAAGAAACTCCCCAAGCAGAGTCGAGGAGTCTTTTGGAGAAAATGCTACAGTTGTTGAAGGTTTTGGAGTAGGAAACAACTTTGCGTTGAACACCCCGAGTTATCCAATTGGAGTCGATTTTGACTTCCAGAGAGTAAGTAGAAAAATAATTTTTCGAGAAATGAGAAATACGATTTTTTCAGGCTCTTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGAAAATACCAACCGTCAACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAATCACACTTCAAACATCTCACAGGTAAGGCTCATTTTTAAAACAGGCCGGTAACACAAATTATTTTTTAGATGTCTTCGCCTCCTCCGAATGCGATTTCGACACGTGAGTTTCATTTGAAAAGTCTGAATGGAAACTCATAAATCGAAAAAATTCAGATCATTCAACGCTCTCCATCGCACCACCGCCAAGAATGATATCATCAATCATGAACCATTTGTCAACACAAATGAAGAAGCGTGAGGAGAGTGGCTGCCTGGACTTCTCTAAAATTGAAGTCAATTTGAAGGCCACTGG</canonical>
            <polymorphic>AATCCAGTACTGGTACAACTGCTCAAAGAAACTCCCCAAGCAGAGTCGAGGAGTCTTTTGGAGAAAATGCTACAGTTGTTGAAGGTTTTGGAGTAGGAAACAACTTTGCGTTGAACACCCCGAGTTATCCAATTGGAGTCGATTTTGACTTCCAGAGAGTAAGTAGAAAAATAATTTTTCGAGAAATGAGAAATACGATTTTTTCAGGCTCTTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGAAAATACCAACCGTCAACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGWCAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAATCACACTTCAAACATCTCACAGGTAAGGCTCATTTTTAAAACAGGCCGGTAACACAAATTATTTTTTAGATGTCTTCGCCTCCTCCGAATGCGATTTCGACACGTGAGTTTCATTTGAAAAGTCTGAATGGAAACTCATAAATCGAAAAAATTCAGATCATTCAACGCTCTCCATCGCACCACCGCCAAGAATGATATCATCAATCATGAACCATTTGTCAACACAAATGAAGAAGCGTGAGGAGAGTGGCTGCCTGGACTTCTCTAAAATTGAAGTCAATTTGAAGGCCACTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCTAAAATCATTACGAAACAC</pcr_primer_p1>
		<pcr_primer_p2>GTTTGAAGGTGGGGATTAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAAC</canonical_amplicon>
		<polymorphic_amplicon>TTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGWCAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34050</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>456217</contig_pos>
        <strand>+</strand>
        <context>CTGAAAGCTG[C/T]CATCCACACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTG</left_flank>
        <right_flank>CATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAACTCCCCAAGCAGAGTCGAGGAGTCTTTTGGAGAAAATGCTACAGTTGTTGAAGGTTTTGGAGTAGGAAACAACTTTGCGTTGAACACCCCGAGTTATCCAATTGGAGTCGATTTTGACTTCCAGAGAGTAAGTAGAAAAATAATTTTTCGAGAAATGAGAAATACGATTTTTTCAGGCTCTTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGAAAATACCAACCGTCAACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAATCACACTTCAAACATCTCACAGGTAAGGCTCATTTTTAAAACAGGCCGGTAACACAAATTATTTTTTAGATGTCTTCGCCTCCTCCGAATGCGATTTCGACACGTGAGTTTCATTTGAAAAGTCTGAATGGAAACTCATAAATCGAAAAAATTCAGATCATTCAACGCTCTCCATCGCACCACCGCCAAGAATGATATCATCAATCATGAACCATTTGTCAACACAAATGAAGAAGCGTGAGGAGAGTGGCTGCCTGGACTTCTCTAAAATTGAAGTCAATTTGAAGGCCACTGGCAAAGAGTTGGACGACACAAGTAAG</canonical>
            <polymorphic>AAGAAACTCCCCAAGCAGAGTCGAGGAGTCTTTTGGAGAAAATGCTACAGTTGTTGAAGGTTTTGGAGTAGGAAACAACTTTGCGTTGAACACCCCGAGTTATCCAATTGGAGTCGATTTTGACTTCCAGAGAGTAAGTAGAAAAATAATTTTTCGAGAAATGAGAAATACGATTTTTTCAGGCTCTTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGAAAATACCAACCGTCAACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGYCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAATCACACTTCAAACATCTCACAGGTAAGGCTCATTTTTAAAACAGGCCGGTAACACAAATTATTTTTTAGATGTCTTCGCCTCCTCCGAATGCGATTTCGACACGTGAGTTTCATTTGAAAAGTCTGAATGGAAACTCATAAATCGAAAAAATTCAGATCATTCAACGCTCTCCATCGCACCACCGCCAAGAATGATATCATCAATCATGAACCATTTGTCAACACAAATGAAGAAGCGTGAGGAGAGTGGCTGCCTGGACTTCTCTAAAATTGAAGTCAATTTGAAGGCCACTGGCAAAGAGTTGGACGACACAAGTAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCTAAAATCATTACGAAACAC</pcr_primer_p1>
		<pcr_primer_p2>GTTTGAAGGTGGGGATTAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAAC</canonical_amplicon>
		<polymorphic_amplicon>TTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGYCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34051</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>456252</contig_pos>
        <strand>+</strand>
        <context>GGTATACCGC[G/T]ATTGTCTTST</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGC</left_flank>
        <right_flank>ATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAAAATGCTACAGTTGTTGAAGGTTTTGGAGTAGGAAACAACTTTGCGTTGAACACCCCGAGTTATCCAATTGGAGTCGATTTTGACTTCCAGAGAGTAAGTAGAAAAATAATTTTTCGAGAAATGAGAAATACGATTTTTTCAGGCTCTTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGAAAATACCAACCGTCAACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAATCACACTTCAAACATCTCACAGGTAAGGCTCATTTTTAAAACAGGCCGGTAACACAAATTATTTTTTAGATGTCTTCGCCTCCTCCGAATGCGATTTCGACACGTGAGTTTCATTTGAAAAGTCTGAATGGAAACTCATAAATCGAAAAAATTCAGATCATTCAACGCTCTCCATCGCACCACCGCCAAGAATGATATCATCAATCATGAACCATTTGTCAACACAAATGAAGAAGCGTGAGGAGAGTGGCTGCCTGGACTTCTCTAAAATTGAAGTCAATTTGAAGGCCACTGGCAAAGAGTTGGACGACACAAGTAAGAATACTGAATTCAATTCATCGGTTCATTTTTCTTA</canonical>
            <polymorphic>GAGAAAATGCTACAGTTGTTGAAGGTTTTGGAGTAGGAAACAACTTTGCGTTGAACACCCCGAGTTATCCAATTGGAGTCGATTTTGACTTCCAGAGAGTAAGTAGAAAAATAATTTTTCGAGAAATGAGAAATACGATTTTTTCAGGCTCTTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGAAAATACCAACCGTCAACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCKATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAATCACACTTCAAACATCTCACAGGTAAGGCTCATTTTTAAAACAGGCCGGTAACACAAATTATTTTTTAGATGTCTTCGCCTCCTCCGAATGCGATTTCGACACGTGAGTTTCATTTGAAAAGTCTGAATGGAAACTCATAAATCGAAAAAATTCAGATCATTCAACGCTCTCCATCGCACCACCGCCAAGAATGATATCATCAATCATGAACCATTTGTCAACACAAATGAAGAAGCGTGAGGAGAGTGGCTGCCTGGACTTCTCTAAAATTGAAGTCAATTTGAAGGCCACTGGCAAAGAGTTGGACGACACAAGTAAGAATACTGAATTCAATTCATCGGTTCATTTTTCTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCTAAAATCATTACGAAACAC</pcr_primer_p1>
		<pcr_primer_p2>ACTAGATTCTCGTTTGAAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGT</canonical_amplicon>
		<polymorphic_amplicon>TTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCKATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34052</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>456261</contig_pos>
        <strand>+</strand>
        <context>CKATTGTCTT[C/G]TAWKAAAGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTT</left_flank>
        <right_flank>TATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACAGTTGTTGAAGGTTTTGGAGTAGGAAACAACTTTGCGTTGAACACCCCGAGTTATCCAATTGGAGTCGATTTTGACTTCCAGAGAGTAAGTAGAAAAATAATTTTTCGAGAAATGAGAAATACGATTTTTTCAGGCTCTTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGAAAATACCAACCGTCAACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAATCACACTTCAAACATCTCACAGGTAAGGCTCATTTTTAAAACAGGCCGGTAACACAAATTATTTTTTAGATGTCTTCGCCTCCTCCGAATGCGATTTCGACACGTGAGTTTCATTTGAAAAGTCTGAATGGAAACTCATAAATCGAAAAAATTCAGATCATTCAACGCTCTCCATCGCACCACCGCCAAGAATGATATCATCAATCATGAACCATTTGTCAACACAAATGAAGAAGCGTGAGGAGAGTGGCTGCCTGGACTTCTCTAAAATTGAAGTCAATTTGAAGGCCACTGGCAAAGAGTTGGACGACACAAGTAAGAATACTGAATTCAATTCATCGGTTCATTTTTCTTATTTTCAGTC</canonical>
            <polymorphic>CTACAGTTGTTGAAGGTTTTGGAGTAGGAAACAACTTTGCGTTGAACACCCCGAGTTATCCAATTGGAGTCGATTTTGACTTCCAGAGAGTAAGTAGAAAAATAATTTTTCGAGAAATGAGAAATACGATTTTTTCAGGCTCTTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGAAAATACCAACCGTCAACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTSTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAATCACACTTCAAACATCTCACAGGTAAGGCTCATTTTTAAAACAGGCCGGTAACACAAATTATTTTTTAGATGTCTTCGCCTCCTCCGAATGCGATTTCGACACGTGAGTTTCATTTGAAAAGTCTGAATGGAAACTCATAAATCGAAAAAATTCAGATCATTCAACGCTCTCCATCGCACCACCGCCAAGAATGATATCATCAATCATGAACCATTTGTCAACACAAATGAAGAAGCGTGAGGAGAGTGGCTGCCTGGACTTCTCTAAAATTGAAGTCAATTTGAAGGCCACTGGCAAAGAGTTGGACGACACAAGTAAGAATACTGAATTCAATTCATCGGTTCATTTTTCTTATTTTCAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTGAAATTCGCTGAGTAG</pcr_primer_p1>
		<pcr_primer_p2>ATTCTCTCCATAAGTTGCTTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAAT</canonical_amplicon>
		<polymorphic_amplicon>GGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTSTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34053</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>456264</contig_pos>
        <strand>+</strand>
        <context>TTGTCTTSTA[A/T]KAAAGATTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTA</left_flank>
        <right_flank>GAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTTGTTGAAGGTTTTGGAGTAGGAAACAACTTTGCGTTGAACACCCCGAGTTATCCAATTGGAGTCGATTTTGACTTCCAGAGAGTAAGTAGAAAAATAATTTTTCGAGAAATGAGAAATACGATTTTTTCAGGCTCTTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGAAAATACCAACCGTCAACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAATCACACTTCAAACATCTCACAGGTAAGGCTCATTTTTAAAACAGGCCGGTAACACAAATTATTTTTTAGATGTCTTCGCCTCCTCCGAATGCGATTTCGACACGTGAGTTTCATTTGAAAAGTCTGAATGGAAACTCATAAATCGAAAAAATTCAGATCATTCAACGCTCTCCATCGCACCACCGCCAAGAATGATATCATCAATCATGAACCATTTGTCAACACAAATGAAGAAGCGTGAGGAGAGTGGCTGCCTGGACTTCTCTAAAATTGAAGTCAATTTGAAGGCCACTGGCAAAGAGTTGGACGACACAAGTAAGAATACTGAATTCAATTCATCGGTTCATTTTTCTTATTTTCAGTCTCC</canonical>
            <polymorphic>CAGTTGTTGAAGGTTTTGGAGTAGGAAACAACTTTGCGTTGAACACCCCGAGTTATCCAATTGGAGTCGATTTTGACTTCCAGAGAGTAAGTAGAAAAATAATTTTTCGAGAAATGAGAAATACGATTTTTTCAGGCTCTTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGAAAATACCAACCGTCAACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTAWGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAATCACACTTCAAACATCTCACAGGTAAGGCTCATTTTTAAAACAGGCCGGTAACACAAATTATTTTTTAGATGTCTTCGCCTCCTCCGAATGCGATTTCGACACGTGAGTTTCATTTGAAAAGTCTGAATGGAAACTCATAAATCGAAAAAATTCAGATCATTCAACGCTCTCCATCGCACCACCGCCAAGAATGATATCATCAATCATGAACCATTTGTCAACACAAATGAAGAAGCGTGAGGAGAGTGGCTGCCTGGACTTCTCTAAAATTGAAGTCAATTTGAAGGCCACTGGCAAAGAGTTGGACGACACAAGTAAGAATACTGAATTCAATTCATCGGTTCATTTTTCTTATTTTCAGTCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTGAAATTCGCTGAGTAG</pcr_primer_p1>
		<pcr_primer_p2>ATTCTCTCCATAAGTTGCTTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAAT</canonical_amplicon>
		<polymorphic_amplicon>GGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTAWGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34054</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>456265</contig_pos>
        <strand>+</strand>
        <context>TGTCTTSTAW[G/T]AAAGATTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTAT</left_flank>
        <right_flank>AAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTGTTGAAGGTTTTGGAGTAGGAAACAACTTTGCGTTGAACACCCCGAGTTATCCAATTGGAGTCGATTTTGACTTCCAGAGAGTAAGTAGAAAAATAATTTTTCGAGAAATGAGAAATACGATTTTTTCAGGCTCTTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGAAAATACCAACCGTCAACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAATCACACTTCAAACATCTCACAGGTAAGGCTCATTTTTAAAACAGGCCGGTAACACAAATTATTTTTTAGATGTCTTCGCCTCCTCCGAATGCGATTTCGACACGTGAGTTTCATTTGAAAAGTCTGAATGGAAACTCATAAATCGAAAAAATTCAGATCATTCAACGCTCTCCATCGCACCACCGCCAAGAATGATATCATCAATCATGAACCATTTGTCAACACAAATGAAGAAGCGTGAGGAGAGTGGCTGCCTGGACTTCTCTAAAATTGAAGTCAATTTGAAGGCCACTGGCAAAGAGTTGGACGACACAAGTAAGAATACTGAATTCAATTCATCGGTTCATTTTTCTTATTTTCAGTCTCCT</canonical>
            <polymorphic>AGTTGTTGAAGGTTTTGGAGTAGGAAACAACTTTGCGTTGAACACCCCGAGTTATCCAATTGGAGTCGATTTTGACTTCCAGAGAGTAAGTAGAAAAATAATTTTTCGAGAAATGAGAAATACGATTTTTTCAGGCTCTTCGCTCTTTGCCGGATTATTCCAACATGTTGCCACCAACCGGTTTTGGAAAATACCAACCGTCAACCAATGCACAGGTAAGACTTATCTTCTCAAAAGGGGGCTCCGACAAAAATCTTATTCCACTAAAATGTTTCCAAGGTTATGTATTTTCCTAAAATCATTACGAAACACGGGAGGGGAGGGGGGGTGAAACCGTATACATGGATTTGGATCGAGATTTCGCGCACTTTTGAGTTGCGTCGCGGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATKAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAATCACACTTCAAACATCTCACAGGTAAGGCTCATTTTTAAAACAGGCCGGTAACACAAATTATTTTTTAGATGTCTTCGCCTCCTCCGAATGCGATTTCGACACGTGAGTTTCATTTGAAAAGTCTGAATGGAAACTCATAAATCGAAAAAATTCAGATCATTCAACGCTCTCCATCGCACCACCGCCAAGAATGATATCATCAATCATGAACCATTTGTCAACACAAATGAAGAAGCGTGAGGAGAGTGGCTGCCTGGACTTCTCTAAAATTGAAGTCAATTTGAAGGCCACTGGCAAAGAGTTGGACGACACAAGTAAGAATACTGAATTCAATTCATCGGTTCATTTTTCTTATTTTCAGTCTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>504 277 219</canonical_bands>
                <polymorphic_bands>781 219</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTGAAATTCGCTGAGTAG</pcr_primer_p1>
		<pcr_primer_p2>ATTCTCTCCATAAGTTGCTTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATGAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAAT</canonical_amplicon>
		<polymorphic_amplicon>GGTTGAAATTCGCTGAGTAGCGACTCACATAACGTTAATTGGACAGAGAGGATGATACTGAAAGCTGTCATCCACACACGCGCGGCGCCTTCGGTATACCGCTATTGTCTTGTATKAAAGATTTCACCAGAGTTAATCCCCACCTTCAAACGAGAATCTAGTTTGCTAAAAATATGAAAGATGTGATTATTTTAGTATCCCATTGGAGTTCCCGATTTCTACTTGCCACAAGCAACTTATGGAGAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34055</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>474855</contig_pos>
        <strand>+</strand>
        <context>ACTCAAAAAW[A/G]TTTTTTAATR</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGTTTATAAGAATATTTAGTTTGAATACCGTGATAAAGTACTCAAAAAA</left_flank>
        <right_flank>TTTTTTAATAAAGCTTCACGAATGAGAAATACACTAACCATTCCATGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGTACTTCATTTCCTCCGCTTCCGCCATTATTGTTGTTTTCGTTTACAACCAATATCGCAATGAATCTCCTTTGGTTATCTCGTTCTTCAGATCTGAAAATTATTTTTATTCATTTTTCTCTTGCTCTCAGACCCACCAGCCCATCCAGCCCATCTTGTCAGCTGGTCTTCTTTTCCGTTTGGAATCAATTTTCCTTGCTTCATGTTTTGCAATCTGATTCCTTTATTTTCCTTGTTGACGTCGTTTACATCCTAAATCGCCATCAGATTCAGTAGATCTGAAAATGGCTTTGACTGGGGAACTGACTTGTTTTCCAGATCTGAAAATTTTCTTTAATGATTTCCTTTTGATCTCAAACATACCCATTCTCCAGCTATCATTGCTCCAGCTCTAATCGCACACACATGCGGCCGCACGGTGACCGGTGTTGTCTGAAAATCAAATTTTGTTTATAAGAATATTTAGTTTGAATACCGTGATAAAGTACTCAAAAAATTTTTTTAATAAAGCTTCACGAATGAGAAATACACTAACCATTCCATGGAAATCGTAGTAGTTCACCCTTCCGTTGACCTCATTTTCGTCCAAGATTGCCTGAAGGTTCAGTGGATCTGAACAGGGTTTGGGGTACCAACCCTATTCAGTTCGCTGCCCTTATAAGTATCTGGAAAAAAATTTCAATGATCTGAAAGAGAAAATATTTGAAAAATATGAAACAAGAGTGCGTGAAGAAAAATGCAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTTCTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAGCAACGCTCTTTTAAAAAATTGATGTCAATACCTCTTTTTCTTATTTGTTTGTTATTATGCGCGTTTTCCCGCCAAAAAACTCGCGAGACCAAATTTGATCTACCACAAAAAATGAGGTGTGACAAGTCTAAAGCGCATTACGAAAATTTGTTCATTTTTAGT</canonical>
            <polymorphic>TTTCGTACTTCATTTCCTCCGCTTCCGCCATTATTGTTGTTTTCGTTTACAACCAATATCGCAATGAATCTCCTTTGGTTATCTCGTTCTTCAGATCTGAAAATTATTTTTATTCATTTTTCTCTTGCTCTCAGACCCACCAGCCCATCCAGCCCATCTTGTCAGCTGGTCTTCTTTTCCGTTTGGAATCAATTTTCCTTGCTTCATGTTTTGCAATCTGATTCCTTTATTTTCCTTGTTGACGTCGTTTACATCCTAAATCGCCATCAGATTCAGTAGATCTGAAAATGGCTTTGACTGGGGAACTGACTTGTTTTCCAGATCTGAAAATTTTCTTTAATGATTTCCTTTTGATCTCAAACATACCCATTCTCCAGCTATCATTGCTCCAGCTCTAATCGCACACACATGCGGCCGCACGGTGACCGGTGTTGTCTGAAAATCAAATTTTGTTTATAAGAATATTTAGTTTGAATACCGTGATAAAGTACTCAAAAAARTTTTTTAATAAAGCTTCACGAATGAGAAATACACTAACCATTCCATGGAAATCGTAGTAGTTCACCCTTCCGTTGACCTCATTTTCGTCCAAGATTGCCTGAAGGTTCAGTGGATCTGAACAGGGTTTGGGGTACCAACCCTATTCAGTTCGCTGCCCTTATAAGTATCTGGAAAAAAATTTCAATGATCTGAAAGAGAAAATATTTGAAAAATATGAAACAAGAGTGCGTGAAGAAAAATGCAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTTCTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAGCAACGCTCTTTTAAAAAATTGATGTCAATACCTCTTTTTCTTATTTGTTTGTTATTATGCGCGTTTTCCCGCCAAAAAACTCGCGAGACCAAATTTGATCTACCACAAAAAATGAGGTGTGACAAGTCTAAAGCGCATTACGAAAATTTGTTCATTTTTAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>328 180 146 117 106 53 52 18</canonical_bands>
                <polymorphic_bands>328 232 146 117 106 53 18</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>180 138 117 101 89 75 71 66 53 52 40 18</canonical_bands>
                <polymorphic_bands>232 138 117 101 89 75 71 66 53 40 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCCTTTTGATCTCAAACATAC</pcr_primer_p1>
		<pcr_primer_p2>ATCTTGGACGAAAATGAGGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTCCTTTTGATCTCAAACATACCCATTCTCCAGCTATCATTGCTCCAGCTCTAATCGCACACACATGCGGCCGCACGGTGACCGGTGTTGTCTGAAAATCAAATTTTGTTTATAAGAATATTTAGTTTGAATACCGTGATAAAGTACTCAAAAAATTTTTTTAATAAAGCTTCACGAATGAGAAATACACTAACCATTCCATGGAAATCGTAGTAGTTCACCCTTCCGTTGACCTCATTTTCGTCCAAGAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCCTTTTGATCTCAAACATACCCATTCTCCAGCTATCATTGCTCCAGCTCTAATCGCACACACATGCGGCCGCACGGTGACCGGTGTTGTCTGAAAATCAAATTTTGTTTATAAGAATATTTAGTTTGAATACCGTGATAAAGTACTCAAAAAARTTTTTTAATAAAGCTTCACGAATGAGAAATACACTAACCATTCCATGGAAATCGTAGTAGTTCACCCTTCCGTTGACCTCATTTTCGTCCAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34056</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>475028</contig_pos>
        <strand>+</strand>
        <context>AAGTATCTGG[C/T]AAAAAATTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGTTTGGGGTACCAACCCTATTCAGTTCGCTGCCCTTATAAGTATCTGG</left_flank>
        <right_flank>AAAAAATTTCAATGATCTGAAAGAGAAAATATTTGAAAAATATGAAACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTCCGTTTGGAATCAATTTTCCTTGCTTCATGTTTTGCAATCTGATTCCTTTATTTTCCTTGTTGACGTCGTTTACATCCTAAATCGCCATCAGATTCAGTAGATCTGAAAATGGCTTTGACTGGGGAACTGACTTGTTTTCCAGATCTGAAAATTTTCTTTAATGATTTCCTTTTGATCTCAAACATACCCATTCTCCAGCTATCATTGCTCCAGCTCTAATCGCACACACATGCGGCCGCACGGTGACCGGTGTTGTCTGAAAATCAAATTTTGTTTATAAGAATATTTAGTTTGAATACCGTGATAAAGTACTCAAAAAATTTTTTTAATAAAGCTTCACGAATGAGAAATACACTAACCATTCCATGGAAATCGTAGTAGTTCACCCTTCCGTTGACCTCATTTTCGTCCAAGATTGCCTGAAGGTTCAGTGGATCTGAACAGGGTTTGGGGTACCAACCCTATTCAGTTCGCTGCCCTTATAAGTATCTGGAAAAAAATTTCAATGATCTGAAAGAGAAAATATTTGAAAAATATGAAACAAGAGTGCGTGAAGAAAAATGCAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTTCTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAGCAACGCTCTTTTAAAAAATTGATGTCAATACCTCTTTTTCTTATTTGTTTGTTATTATGCGCGTTTTCCCGCCAAAAAACTCGCGAGACCAAATTTGATCTACCACAAAAAATGAGGTGTGACAAGTCTAAAGCGCATTACGAAAATTTGTTCATTTTTAGTGAATGAAGATGGTTTCTAAAAACGCATAAATATCACATAAGAGAATTTTCAACGTGACAAAAAGCAAAAGGAAGAAAATGAGGTTCCTGTTATTTATCGGTTGCAAGCGCGTGAGTATGTTTGCATTCCCAACAGAGATGTCAGGAATTCCGACTTCCGACTTCCTACTTCCG</canonical>
            <polymorphic>CTTTTCCGTTTGGAATCAATTTTCCTTGCTTCATGTTTTGCAATCTGATTCCTTTATTTTCCTTGTTGACGTCGTTTACATCCTAAATCGCCATCAGATTCAGTAGATCTGAAAATGGCTTTGACTGGGGAACTGACTTGTTTTCCAGATCTGAAAATTTTCTTTAATGATTTCCTTTTGATCTCAAACATACCCATTCTCCAGCTATCATTGCTCCAGCTCTAATCGCACACACATGCGGCCGCACGGTGACCGGTGTTGTCTGAAAATCAAATTTTGTTTATAAGAATATTTAGTTTGAATACCGTGATAAAGTACTCAAAAAATTTTTTTAATAAAGCTTCACGAATGAGAAATACACTAACCATTCCATGGAAATCGTAGTAGTTCACCCTTCCGTTGACCTCATTTTCGTCCAAGATTGCCTGAAGGTTCAGTGGATCTGAACAGGGTTTGGGGTACCAACCCTATTCAGTTCGCTGCCCTTATAAGTATCTGGYAAAAAATTTCAATGATCTGAAAGAGAAAATATTTGAAAAATATGAAACAAGAGTGCGTGAAGAAAAATGCAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTTCTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAGCAACGCTCTTTTAAAAAATTGATGTCAATACCTCTTTTTCTTATTTGTTTGTTATTATGCGCGTTTTCCCGCCAAAAAACTCGCGAGACCAAATTTGATCTACCACAAAAAATGAGGTGTGACAAGTCTAAAGCGCATTACGAAAATTTGTTCATTTTTAGTGAATGAAGATGGTTTCTAAAAACGCATAAATATCACATAAGAGAATTTTCAACGTGACAAAAAGCAAAAGGAAGAAAATGAGGTTCCTGTTATTTATCGGTTGCAAGCGCGTGAGTATGTTTGCATTCCCAACAGAGATGTCAGGAATTCCGACTTCCGACTTCCTACTTCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>222 199 152 145 143 108 31</canonical_bands>
                <polymorphic_bands>295 222 199 145 108 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAAGGTTCAGTGGATCTG</pcr_primer_p1>
		<pcr_primer_p2>GCTGGTTTTGATTTTCTTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CTGAAGGTTCAGTGGATCTGAACAGGGTTTGGGGTACCAACCCTATTCAGTTCGCTGCCCTTATAAGTATCTGGAAAAAAATTTCAATGATCTGAAAGAGAAAATATTTGAAAAATATGAAACAAGAGTGCGTGAAGAAAAATGCAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTTCTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAGC</canonical_amplicon>
		<polymorphic_amplicon>CTGAAGGTTCAGTGGATCTGAACAGGGTTTGGGGTACCAACCCTATTCAGTTCGCTGCCCTTATAAGTATCTGGYAAAAAATTTCAATGATCTGAAAGAGAAAATATTTGAAAAATATGAAACAAGAGTGCGTGAAGAAAAATGCAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTTCTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34057</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>475413</contig_pos>
        <strand>+</strand>
        <context>TTCAACGTGA[A/C]AAAAAGCAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATGGTTTCTAAAAACGCATAAATATCACATAAGAGAATTTTCAACGTGA</left_flank>
        <right_flank>AAAAAGCAAAAGGAAGAAAATGAGGTTCCTGTTATTTATCGGTTGCAAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTCACCCTTCCGTTGACCTCATTTTCGTCCAAGATTGCCTGAAGGTTCAGTGGATCTGAACAGGGTTTGGGGTACCAACCCTATTCAGTTCGCTGCCCTTATAAGTATCTGGAAAAAAATTTCAATGATCTGAAAGAGAAAATATTTGAAAAATATGAAACAAGAGTGCGTGAAGAAAAATGCAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTTCTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAGCAACGCTCTTTTAAAAAATTGATGTCAATACCTCTTTTTCTTATTTGTTTGTTATTATGCGCGTTTTCCCGCCAAAAAACTCGCGAGACCAAATTTGATCTACCACAAAAAATGAGGTGTGACAAGTCTAAAGCGCATTACGAAAATTTGTTCATTTTTAGTGAATGAAGATGGTTTCTAAAAACGCATAAATATCACATAAGAGAATTTTCAACGTGACAAAAAGCAAAAGGAAGAAAATGAGGTTCCTGTTATTTATCGGTTGCAAGCGCGTGAGTATGTTTGCATTCCCAACAGAGATGTCAGGAATTCCGACTTCCGACTTCCTACTTCCGGAAAATCAGTTTTACTTCCAGCTTCAAACTCTCAAACTCCGCCAATGAAGTTTGGCAAGAAACGTTGCGAAATGTGTTCATTTTTGATAAGAAAAATCAGAAAATGTTCAAAATTTGCGCCAATACCATAAATTATGCTCCAAAATAACAGTAGGCTATTAAAAAAATTGAAAATTTTAAAGTTTACTTCCGACTTCCGACTTCCAACTAACTACTTCCTACTTCCGGGCATTTGGTCACTTCCGACTTCCGACTTCCTAGTTCAAAATGTAACTTCCAACTTTCTAATTCCGACTTCCGAGTTCAAAAATTTTACTTCCTGATATCTCTGGTACCATTCAGAATGTTCTTGTAAACATTAGCAAAACAACGAACCACAATAATC</canonical>
            <polymorphic>AGTTCACCCTTCCGTTGACCTCATTTTCGTCCAAGATTGCCTGAAGGTTCAGTGGATCTGAACAGGGTTTGGGGTACCAACCCTATTCAGTTCGCTGCCCTTATAAGTATCTGGAAAAAAATTTCAATGATCTGAAAGAGAAAATATTTGAAAAATATGAAACAAGAGTGCGTGAAGAAAAATGCAATTCCGAGTACACAGCTTACGAGCGCAACAAGAAAATAAAATTTCTGAAAACCCCATTAAGAAGCGTCAAGAAAAATAAGAAAATCAAAACCAGCAACGCTCTTTTAAAAAATTGATGTCAATACCTCTTTTTCTTATTTGTTTGTTATTATGCGCGTTTTCCCGCCAAAAAACTCGCGAGACCAAATTTGATCTACCACAAAAAATGAGGTGTGACAAGTCTAAAGCGCATTACGAAAATTTGTTCATTTTTAGTGAATGAAGATGGTTTCTAAAAACGCATAAATATCACATAAGAGAATTTTCAACGTGAMAAAAAGCAAAAGGAAGAAAATGAGGTTCCTGTTATTTATCGGTTGCAAGCGCGTGAGTATGTTTGCATTCCCAACAGAGATGTCAGGAATTCCGACTTCCGACTTCCTACTTCCGGAAAATCAGTTTTACTTCCAGCTTCAAACTCTCAAACTCCGCCAATGAAGTTTGGCAAGAAACGTTGCGAAATGTGTTCATTTTTGATAAGAAAAATCAGAAAATGTTCAAAATTTGCGCCAATACCATAAATTATGCTCCAAAATAACAGTAGGCTATTAAAAAAATTGAAAATTTTAAAGTTTACTTCCGACTTCCGACTTCCAACTAACTACTTCCTACTTCCGGGCATTTGGTCACTTCCGACTTCCGACTTCCTAGTTCAAAATGTAACTTCCAACTTTCTAATTCCGACTTCCGAGTTCAAAAATTTTACTTCCTGATATCTCTGGTACCATTCAGAATGTTCTTGTAAACATTAGCAAAACAACGAACCACAATAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>398 355 116 97 34</canonical_bands>
                <polymorphic_bands>452 398 116 34</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>398 355 150 97</canonical_bands>
                <polymorphic_bands>452 398 150</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGTTATTATGCGCGTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTTGGGAATGCAAACATACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTGTTATTATGCGCGTTTTCCCGCCAAAAAACTCGCGAGACCAAATTTGATCTACCACAAAAAATGAGGTGTGACAAGTCTAAAGCGCATTACGAAAATTTGTTCATTTTTAGTGAATGAAGATGGTTTCTAAAAACGCATAAATATCACATAAGAGAATTTTCAACGTGACAAAAAGCAAAAGGAAGAAAATGAGGTTCCTGTTATTTATCGGTTGCAAGCGCGTGAGTATGTTTGCATTCCCAAC</canonical_amplicon>
		<polymorphic_amplicon>TTTGTTATTATGCGCGTTTTCCCGCCAAAAAACTCGCGAGACCAAATTTGATCTACCACAAAAAATGAGGTGTGACAAGTCTAAAGCGCATTACGAAAATTTGTTCATTTTTAGTGAATGAAGATGGTTTCTAAAAACGCATAAATATCACATAAGAGAATTTTCAACGTGAMAAAAAGCAAAAGGAAGAAAATGAGGTTCCTGTTATTTATCGGTTGCAAGCGCGTGAGTATGTTTGCATTCCCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34058</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>519396</contig_pos>
        <strand></strand>
        <context>GCTATTCCAT[A/G]ACTTTCAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATGATCAACCTACCTCAATATTGCATTTTGCGATTTTTTGCTATTCCAT</left_flank>
        <right_flank>ACTTTCAAATAAATGTTCTTGTCCCTTGTCCTTTCAGTTCAGTCCAAACA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAATAATCTTTTCCAAATTTATTTGTTCTCAAAAAATCTATTACAAATTCAAAATTCGGCAGAATAACGTGTGATAGAAAAGTCCGTAACTTTACGTTTTGCGCAAATTTATCTCGGCTGCTGTTGAATATATTGAAAAGTTTTCAACTTATGAATTGTTCATCATAATATAATAAAAACTTAATCAGTTGACAATTTTTTTGTATAGCCAACAGAAACCGAGATAAAGTGGCTCGAACGTAAAAGTGCGTAGTCCCTTCCGTCATAGATGTTATAAATAGATTCTTAAAAACACATTTAGCCTTATTCTAGTTCTGAATTTCAAAAAATTACAAATCTCACTATTCAGTGAAAAACAAAAAAACACTCTATAGTAACTGATTGCTTTATTCTAACAAAACCAGTTTTCTCACTTTTCAAGGCTTCTTTTCTAATTCAGTAACCTTGGTATGATCAACCTACCTCAATATTGCATTTTGCGATTTTTTGCTATTCCATAACTTTCAAATAAATGTTCTTGTCCCTTGTCCTTTCAGTTCAGTCCAAACAGTACAAAACGTGTGTTCTTTTAGGAACCATTACTAGCTGGATCCCACAAAAACTCAAATTCGATGCGACCGCCGGGAATATCGCCGACGTGTCCACGTCACGGCCGTGCCGCACTTGCCATGCAAAACAGCCGGTAAGCCGATGAGGTTACGGTAGATTGACTAATACTGACATCTTCAAGAGGTAACAGTTTGACTGCTGCACAAGCTCCGACACTGGAAGAGATACAGGTCTAACACAATAACTTCATACACCGTCAAAAATCATCAAATGAATTTTCATCATCAGATTTCTAACTTTTATCCAATTTTCATTCTTTTTTTTTCAAAATCCCAGCTCACGATCTCCCATTTCTTTCGTTTTGTTTTTTTGCTCTGTCTTGAAATGTACACATCCATTTTTGCGGTGTTCTGTACATATTTTTTTCTCAATCTCGTCTCATGAAAATCT</canonical>
            <polymorphic>CGAATAATCTTTTCCAAATTTATTTGTTCTCAAAAAATCTATTACAAATTCAAAATTCGGCAGAATAACGTGTGATAGAAAAGTCCGTAACTTTACGTTTTGCGCAAATTTATCTCGGCTGCTGTTGAATATATTGAAAAGTTTTCAACTTATGAATTGTTCATCATAATATAATAAAAACTTAATCAGTTGACAATTTTTTTGTATAGCCAACAGAAACCGAGATAAAGTGGCTCGAACGTAAAAGTGCGTAGTCCCTTCCGTCATAGATGTTATAAATAGATTCTTAAAAACACATTTAGCCTTATTCTAGTTCTGAATTTCAAAAAATTACAAATCTCACTATTCAGTGAAAAACAAAAAAACACTCTATAGTAACTGATTGCTTTATTCTAACAAAACCAGTTTTCTCACTTTTCAAGGCTTCTTTTCTAATTCAGTAACCTTGGTATGATCAACCTACCTCAATATTGCATTTTGCGATTTTTTGCTATTCCATRACTTTCAAATAAATGTTCTTGTCCCTTGTCCTTTCAGTTCAGTCCAAACAGTACAAAACGTGTGTTCTTTTAGGAACCATTACTAGCTGGATCCCACAAAAACTCAAATTCGATGCGACCGCCGGGAATATCGCCGACGTGTCCACGTCACGGCCGTGCCGCACTTGCCATGCAAAACAGCCGGTAAGCCGATGAGGTTACGGTAGATTGACTAATACTGACATCTTCAAGAGGTAACAGTTTGACTGCTGCACAAGCTCCGACACTGGAAGAGATACAGGTCTAACACAATAACTTCATACACCGTCAAAAATCATCAAATGAATTTTCATCATCAGATTTCTAACTTTTATCCAATTTTCATTCTTTTTTTTTCAAAATCCCAGCTCACGATCTCCCATTTCTTTCGTTTTGTTTTTTTGCTCTGTCTTGAAATGTACACATCCATTTTTGCGGTGTTCTGTACATATTTTTTTCTCAATCTCGTCTCATGAAAATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCACTATTCAGTGAAAAACAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAGCTAGTAATGGTTCCTAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCACTATTCAGTGAAAAACAAAAAAACACTCTATAGTAACTGATTGCTTTATTCTAACAAAACCAGTTTTCTCACTTTTCAAGGCTTCTTTTCTAATTCAGTAACCTTGGTATGATCAACCTACCTCAATATTGCATTTTGCGATTTTTTGCTATTCCATAACTTTCAAATAAATGTTCTTGTCCCTTGTCCTTTCAGTTCAGTCCAAACAGTACAAAACGTGTGTTCTTTTAGGAACCATTACTAGCTG</canonical_amplicon>
		<polymorphic_amplicon>TCACTATTCAGTGAAAAACAAAAAAACACTCTATAGTAACTGATTGCTTTATTCTAACAAAACCAGTTTTCTCACTTTTCAAGGCTTCTTTTCTAATTCAGTAACCTTGGTATGATCAACCTACCTCAATATTGCATTTTGCGATTTTTTGCTATTCCATRACTTTCAAATAAATGTTCTTGTCCCTTGTCCTTTCAGTTCAGTCCAAACAGTACAAAACGTGTGTTCTTTTAGGAACCATTACTAGCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34059</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>519550</contig_pos>
        <strand></strand>
        <context>CACGTCACGG[C/A]CGTGCCGCAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TCAAATTCGATGCGACCGCCGGGAATATCGCCGACGTGTCCACGTCACGG</left_flank>
        <right_flank>CGTGCCGCACTTGCCATGCAAAACAGCCGGTAAGCCGATGAGGTTACGGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGTTCATCATAATATAATAAAAACTTAATCAGTTGACAATTTTTTTGTATAGCCAACAGAAACCGAGATAAAGTGGCTCGAACGTAAAAGTGCGTAGTCCCTTCCGTCATAGATGTTATAAATAGATTCTTAAAAACACATTTAGCCTTATTCTAGTTCTGAATTTCAAAAAATTACAAATCTCACTATTCAGTGAAAAACAAAAAAACACTCTATAGTAACTGATTGCTTTATTCTAACAAAACCAGTTTTCTCACTTTTCAAGGCTTCTTTTCTAATTCAGTAACCTTGGTATGATCAACCTACCTCAATATTGCATTTTGCGATTTTTTGCTATTCCATAACTTTCAAATAAATGTTCTTGTCCCTTGTCCTTTCAGTTCAGTCCAAACAGTACAAAACGTGTGTTCTTTTAGGAACCATTACTAGCTGGATCCCACAAAAACTCAAATTCGATGCGACCGCCGGGAATATCGCCGACGTGTCCACGTCACGGCCGTGCCGCACTTGCCATGCAAAACAGCCGGTAAGCCGATGAGGTTACGGTAGATTGACTAATACTGACATCTTCAAGAGGTAACAGTTTGACTGCTGCACAAGCTCCGACACTGGAAGAGATACAGGTCTAACACAATAACTTCATACACCGTCAAAAATCATCAAATGAATTTTCATCATCAGATTTCTAACTTTTATCCAATTTTCATTCTTTTTTTTTCAAAATCCCAGCTCACGATCTCCCATTTCTTTCGTTTTGTTTTTTTGCTCTGTCTTGAAATGTACACATCCATTTTTGCGGTGTTCTGTACATATTTTTTTCTCAATCTCGTCTCATGAAAATCTGTATGGATCTTTGGAATTTCTTTCTTTTCTATCTCTTTTTTCCTTTTTAAATAAATTGCGATTTGCATAGAAAATTTTATAAATTTGGAGTTATTATTTACACCAAATTAAAAAAAACTAACAGAATAAATTTTGATAGGTAAACAGGAACTTG</canonical>
            <polymorphic>AATTGTTCATCATAATATAATAAAAACTTAATCAGTTGACAATTTTTTTGTATAGCCAACAGAAACCGAGATAAAGTGGCTCGAACGTAAAAGTGCGTAGTCCCTTCCGTCATAGATGTTATAAATAGATTCTTAAAAACACATTTAGCCTTATTCTAGTTCTGAATTTCAAAAAATTACAAATCTCACTATTCAGTGAAAAACAAAAAAACACTCTATAGTAACTGATTGCTTTATTCTAACAAAACCAGTTTTCTCACTTTTCAAGGCTTCTTTTCTAATTCAGTAACCTTGGTATGATCAACCTACCTCAATATTGCATTTTGCGATTTTTTGCTATTCCATAACTTTCAAATAAATGTTCTTGTCCCTTGTCCTTTCAGTTCAGTCCAAACAGTACAAAACGTGTGTTCTTTTAGGAACCATTACTAGCTGGATCCCACAAAAACTCAAATTCGATGCGACCGCCGGGAATATCGCCGACGTGTCCACGTCACGGMCGTGCCGCACTTGCCATGCAAAACAGCCGGTAAGCCGATGAGGTTACGGTAGATTGACTAATACTGACATCTTCAAGAGGTAACAGTTTGACTGCTGCACAAGCTCCGACACTGGAAGAGATACAGGTCTAACACAATAACTTCATACACCGTCAAAAATCATCAAATGAATTTTCATCATCAGATTTCTAACTTTTATCCAATTTTCATTCTTTTTTTTTCAAAATCCCAGCTCACGATCTCCCATTTCTTTCGTTTTGTTTTTTTGCTCTGTCTTGAAATGTACACATCCATTTTTGCGGTGTTCTGTACATATTTTTTTCTCAATCTCGTCTCATGAAAATCTGTATGGATCTTTGGAATTTCTTTCTTTTCTATCTCTTTTTTCCTTTTTAAATAAATTGCGATTTGCATAGAAAATTTTATAAATTTGGAGTTATTATTTACACCAAATTAAAAAAAACTAACAGAATAAATTTTGATAGGTAAACAGGAACTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>500 465 35</canonical_bands>
                <polymorphic_bands>535 465</polymorphic_bands>
            </assay>
            <assay>
                <site>CGGCCG</site>
                <isoschizomers>
                    <enzyme>BseX3I</enzyme>
                    <enzyme>BstZI</enzyme>
                    <enzyme>EagI</enzyme>
                    <enzyme>EclXI</enzyme>
                    <enzyme>Eco52I</enzyme>
                    <enzyme>XmaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>268 163 129 121 69 69 67 55 27 24 8</canonical_bands>
                <polymorphic_bands>268 163 129 121 94 69 69 55 24 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCAGTCCAAACAGTACAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTAGACCTGTATCTCTTCCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTCAGTCCAAACAGTACAAAACGTGTGTTCTTTTAGGAACCATTACTAGCTGGATCCCACAAAAACTCAAATTCGATGCGACCGCCGGGAATATCGCCGACGTGTCCACGTCACGGCCGTGCCGCACTTGCCATGCAAAACAGCCGGTAAGCCGATGAGGTTACGGTAGATTGACTAATACTGACATCTTCAAGAGGTAACAGTTTGACTGCTGCACAAGCTCCGACACTGGAAGAGATACAGGTCTAA</canonical_amplicon>
		<polymorphic_amplicon>GTTCAGTCCAAACAGTACAAAACGTGTGTTCTTTTAGGAACCATTACTAGCTGGATCCCACAAAAACTCAAATTCGATGCGACCGCCGGGAATATCGCCGACGTGTCCACGTCACGGMCGTGCCGCACTTGCCATGCAAAACAGCCGGTAAGCCGATGAGGTTACGGTAGATTGACTAATACTGACATCTTCAAGAGGTAACAGTTTGACTGCTGCACAAGCTCCGACACTGGAAGAGATACAGGTCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34060</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>519576</contig_pos>
        <strand></strand>
        <context>ATGCAAAACA[G/A]CCGGTAAGCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATCGCCGACGTGTCCACGTCACGGCCGTGCCGCACTTGCCATGCAAAACA</left_flank>
        <right_flank>CCGGTAAGCCGATGAGGTTACGGTAGATTGACTAATACTGACATCTTCAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTAATCAGTTGACAATTTTTTTGTATAGCCAACAGAAACCGAGATAAAGTGGCTCGAACGTAAAAGTGCGTAGTCCCTTCCGTCATAGATGTTATAAATAGATTCTTAAAAACACATTTAGCCTTATTCTAGTTCTGAATTTCAAAAAATTACAAATCTCACTATTCAGTGAAAAACAAAAAAACACTCTATAGTAACTGATTGCTTTATTCTAACAAAACCAGTTTTCTCACTTTTCAAGGCTTCTTTTCTAATTCAGTAACCTTGGTATGATCAACCTACCTCAATATTGCATTTTGCGATTTTTTGCTATTCCATAACTTTCAAATAAATGTTCTTGTCCCTTGTCCTTTCAGTTCAGTCCAAACAGTACAAAACGTGTGTTCTTTTAGGAACCATTACTAGCTGGATCCCACAAAAACTCAAATTCGATGCGACCGCCGGGAATATCGCCGACGTGTCCACGTCACGGCCGTGCCGCACTTGCCATGCAAAACAGCCGGTAAGCCGATGAGGTTACGGTAGATTGACTAATACTGACATCTTCAAGAGGTAACAGTTTGACTGCTGCACAAGCTCCGACACTGGAAGAGATACAGGTCTAACACAATAACTTCATACACCGTCAAAAATCATCAAATGAATTTTCATCATCAGATTTCTAACTTTTATCCAATTTTCATTCTTTTTTTTTCAAAATCCCAGCTCACGATCTCCCATTTCTTTCGTTTTGTTTTTTTGCTCTGTCTTGAAATGTACACATCCATTTTTGCGGTGTTCTGTACATATTTTTTTCTCAATCTCGTCTCATGAAAATCTGTATGGATCTTTGGAATTTCTTTCTTTTCTATCTCTTTTTTCCTTTTTAAATAAATTGCGATTTGCATAGAAAATTTTATAAATTTGGAGTTATTATTTACACCAAATTAAAAAAAACTAACAGAATAAATTTTGATAGGTAAACAGGAACTTGAAAATATATTCAGTTTCTTTGGTTTA</canonical>
            <polymorphic>CTTAATCAGTTGACAATTTTTTTGTATAGCCAACAGAAACCGAGATAAAGTGGCTCGAACGTAAAAGTGCGTAGTCCCTTCCGTCATAGATGTTATAAATAGATTCTTAAAAACACATTTAGCCTTATTCTAGTTCTGAATTTCAAAAAATTACAAATCTCACTATTCAGTGAAAAACAAAAAAACACTCTATAGTAACTGATTGCTTTATTCTAACAAAACCAGTTTTCTCACTTTTCAAGGCTTCTTTTCTAATTCAGTAACCTTGGTATGATCAACCTACCTCAATATTGCATTTTGCGATTTTTTGCTATTCCATAACTTTCAAATAAATGTTCTTGTCCCTTGTCCTTTCAGTTCAGTCCAAACAGTACAAAACGTGTGTTCTTTTAGGAACCATTACTAGCTGGATCCCACAAAAACTCAAATTCGATGCGACCGCCGGGAATATCGCCGACGTGTCCACGTCACGGCCGTGCCGCACTTGCCATGCAAAACARCCGGTAAGCCGATGAGGTTACGGTAGATTGACTAATACTGACATCTTCAAGAGGTAACAGTTTGACTGCTGCACAAGCTCCGACACTGGAAGAGATACAGGTCTAACACAATAACTTCATACACCGTCAAAAATCATCAAATGAATTTTCATCATCAGATTTCTAACTTTTATCCAATTTTCATTCTTTTTTTTTCAAAATCCCAGCTCACGATCTCCCATTTCTTTCGTTTTGTTTTTTTGCTCTGTCTTGAAATGTACACATCCATTTTTGCGGTGTTCTGTACATATTTTTTTCTCAATCTCGTCTCATGAAAATCTGTATGGATCTTTGGAATTTCTTTCTTTTCTATCTCTTTTTTCCTTTTTAAATAAATTGCGATTTGCATAGAAAATTTTATAAATTTGGAGTTATTATTTACACCAAATTAAAAAAAACTAACAGAATAAATTTTGATAGGTAAACAGGAACTTGAAAATATATTCAGTTTCTTTGGTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>294 163 129 121 69 69 67 29 27 24 8</canonical_bands>
                <polymorphic_bands>294 163 129 121 69 69 67 35 29 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCAGTCCAAACAGTACAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTAGACCTGTATCTCTTCCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTCAGTCCAAACAGTACAAAACGTGTGTTCTTTTAGGAACCATTACTAGCTGGATCCCACAAAAACTCAAATTCGATGCGACCGCCGGGAATATCGCCGACGTGTCCACGTCACGGCCGTGCCGCACTTGCCATGCAAAACAGCCGGTAAGCCGATGAGGTTACGGTAGATTGACTAATACTGACATCTTCAAGAGGTAACAGTTTGACTGCTGCACAAGCTCCGACACTGGAAGAGATACAGGTCTAA</canonical_amplicon>
		<polymorphic_amplicon>GTTCAGTCCAAACAGTACAAAACGTGTGTTCTTTTAGGAACCATTACTAGCTGGATCCCACAAAAACTCAAATTCGATGCGACCGCCGGGAATATCGCCGACGTGTCCACGTCACGGCCGTGCCGCACTTGCCATGCAAAACARCCGGTAAGCCGATGAGGTTACGGTAGATTGACTAATACTGACATCTTCAAGAGGTAACAGTTTGACTGCTGCACAAGCTCCGACACTGGAAGAGATACAGGTCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34061</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>547454</contig_pos>
        <strand>+</strand>
        <context>AAACAAAGTT[C/T]TCTTTCCTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAGGCTGACATATTGAAGGGCAGATCTTTTTTGGTTCGAAACAAAGTT</left_flank>
        <right_flank>TCTTTCCTGAACACCAAAAAAAGGATGCATTTTTGAACACGCATTCTCAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGCAAAATAGCTGCATTTTGCTTTTTAAATTGAATTTTGTAAAGCAGTTCGTTCATTCATGGTCGCGACAGCCTAATAGAGAAATTCGTTACAAAAAGCGGATTCTTCTGTTTGTCAAGAAAAATATTAAATAATAGTCAAAATAAAACTCTCATTTCCATGAGACCAGTTACTTTCTTTGAACGCCAAGATATTATATGCTTACGAGTTTTGTTGTATTAGAAAATTTTACAAATCCTCTCTCAAAGTCTTCTTCGGATCTTGTTTTTCCATTAATCAACTTCAGTTTTCAGTTTTGGAACTTTTCTCGTTTTCTTCATTTTCCGTAGAACTTCCACTCCACTGTTTGACCAAAAATTTGATCTTCTGTAAAAACGTATACATTTTCCAGAACACCAAAAAGTACGGATGTATTTTGGAACATGCACTATTGCATGCATGGCGAAAAAAAGGCTGACATATTGAAGGGCAGATCTTTTTTGGTTCGAAACAAAGTTTTCTTTCCTGAACACCAAAAAAAGGATGCATTTTTGAACACGCATTCTCACATTCATGGTAAAATTAATCTTCTTTATTTTGGAACAAAGTTTTCTCTTTGTGCACTTCGAATGTTCCAAAATGAACAAAAAAGGAAAAAAATGAGGAGGAACAAACTTTTTTTTTGAAAATTCTGAGTAACTAGATAGAAAATGGGCACCAACGGAGATAGATCGTGAAAAACAGTTTGGGAATGGTATTCTAATTTCTGCAGAAGGATTCATTCAACAACTCCATGAAAGTGTTTCAAAGGTGAATGATGAGTTTCCGACATGGAAAATCTCGGCCACAGAAGAGCTGATTTGCCAGCTTGTTGTGATTTAAACGTTTTTTTTTTAATTGGAATATCGACTTCTTGCTCGGTAAGTTCCTTTACATTCAACGGATTCAATTCTTTAAAAGTTCTAACTTGAACTTTAACTTGAAGTTCTCCGAGACATTAACAGAATGTGTTTCATTTT</canonical>
            <polymorphic>TTGGCAAAATAGCTGCATTTTGCTTTTTAAATTGAATTTTGTAAAGCAGTTCGTTCATTCATGGTCGCGACAGCCTAATAGAGAAATTCGTTACAAAAAGCGGATTCTTCTGTTTGTCAAGAAAAATATTAAATAATAGTCAAAATAAAACTCTCATTTCCATGAGACCAGTTACTTTCTTTGAACGCCAAGATATTATATGCTTACGAGTTTTGTTGTATTAGAAAATTTTACAAATCCTCTCTCAAAGTCTTCTTCGGATCTTGTTTTTCCATTAATCAACTTCAGTTTTCAGTTTTGGAACTTTTCTCGTTTTCTTCATTTTCCGTAGAACTTCCACTCCACTGTTTGACCAAAAATTTGATCTTCTGTAAAAACGTATACATTTTCCAGAACACCAAAAAGTACGGATGTATTTTGGAACATGCACTATTGCATGCATGGCGAAAAAAAGGCTGACATATTGAAGGGCAGATCTTTTTTGGTTCGAAACAAAGTTYTCTTTCCTGAACACCAAAAAAAGGATGCATTTTTGAACACGCATTCTCACATTCATGGTAAAATTAATCTTCTTTATTTTGGAACAAAGTTTTCTCTTTGTGCACTTCGAATGTTCCAAAATGAACAAAAAAGGAAAAAAATGAGGAGGAACAAACTTTTTTTTTGAAAATTCTGAGTAACTAGATAGAAAATGGGCACCAACGGAGATAGATCGTGAAAAACAGTTTGGGAATGGTATTCTAATTTCTGCAGAAGGATTCATTCAACAACTCCATGAAAGTGTTTCAAAGGTGAATGATGAGTTTCCGACATGGAAAATCTCGGCCACAGAAGAGCTGATTTGCCAGCTTGTTGTGATTTAAACGTTTTTTTTTTAATTGGAATATCGACTTCTTGCTCGGTAAGTTCCTTTACATTCAACGGATTCAATTCTTTAAAAGTTCTAACTTGAACTTTAACTTGAAGTTCTCCGAGACATTAACAGAATGTGTTTCATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCAAAAATTTGATCTTCTGTA</pcr_primer_p1>
		<pcr_primer_p2>GAGAAAACTTTGTTCCAAAATAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GACCAAAAATTTGATCTTCTGTAAAAACGTATACATTTTCCAGAACACCAAAAAGTACGGATGTATTTTGGAACATGCACTATTGCATGCATGGCGAAAAAAAGGCTGACATATTGAAGGGCAGATCTTTTTTGGTTCGAAACAAAGTTTTCTTTCCTGAACACCAAAAAAAGGATGCATTTTTGAACACGCATTCTCACATTCATGGTAAAATTAATCTTCTTTATTTTGGAACAAAGTTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>GACCAAAAATTTGATCTTCTGTAAAAACGTATACATTTTCCAGAACACCAAAAAGTACGGATGTATTTTGGAACATGCACTATTGCATGCATGGCGAAAAAAAGGCTGACATATTGAAGGGCAGATCTTTTTTGGTTCGAAACAAAGTTYTCTTTCCTGAACACCAAAAAAAGGATGCATTTTTGAACACGCATTCTCACATTCATGGTAAAATTAATCTTCTTTATTTTGGAACAAAGTTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34062</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>547821</contig_pos>
        <strand>+</strand>
        <context>GATTTAAACG[C/T]TTTTTTTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATCTCGGCCACAGAAGAGCTGATTTGCCAGCTTGTTGTGATTTAAACG</left_flank>
        <right_flank>TTTTTTTTTAATTGGAATATCGACTTCTTGCTCGGTAAGTTCCTTTACAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGTAAAAACGTATACATTTTCCAGAACACCAAAAAGTACGGATGTATTTTGGAACATGCACTATTGCATGCATGGCGAAAAAAAGGCTGACATATTGAAGGGCAGATCTTTTTTGGTTCGAAACAAAGTTTTCTTTCCTGAACACCAAAAAAAGGATGCATTTTTGAACACGCATTCTCACATTCATGGTAAAATTAATCTTCTTTATTTTGGAACAAAGTTTTCTCTTTGTGCACTTCGAATGTTCCAAAATGAACAAAAAAGGAAAAAAATGAGGAGGAACAAACTTTTTTTTTGAAAATTCTGAGTAACTAGATAGAAAATGGGCACCAACGGAGATAGATCGTGAAAAACAGTTTGGGAATGGTATTCTAATTTCTGCAGAAGGATTCATTCAACAACTCCATGAAAGTGTTTCAAAGGTGAATGATGAGTTTCCGACATGGAAAATCTCGGCCACAGAAGAGCTGATTTGCCAGCTTGTTGTGATTTAAACGTTTTTTTTTTAATTGGAATATCGACTTCTTGCTCGGTAAGTTCCTTTACATTCAACGGATTCAATTCTTTAAAAGTTCTAACTTGAACTTTAACTTGAAGTTCTCCGAGACATTAACAGAATGTGTTTCATTTTTCTCAGTTTATTACTATGAAAATCAATATGTCTTTGTTTTCAAAATATAGGCTAGATGCGCCTCTCTCGCCCAAATCAATCTGACTGCAAAAACAATTAAATCCGGAGCTAAGACGCTATTCAATTTTTCGTATACCCATTCTGTGATTAATCTTCTCCGGTTTTATTTTTCTCTTTTCTCAATTCTCGCTTTTTCGTTTGTGAAACCATATTTCATATATTTCTAATCTCATTTCTCATCAAACGAGTATCGATTTCTCTTTTCTGCAACTGAACTCTGCTCCTCAAAGGGCACCTTCCCAGACAATAGCCGGCAAAATATGTGCCAATTATAATGTGTTCCGTTGATTGAGTTGCGCGCAAAACA</canonical>
            <polymorphic>TCTGTAAAAACGTATACATTTTCCAGAACACCAAAAAGTACGGATGTATTTTGGAACATGCACTATTGCATGCATGGCGAAAAAAAGGCTGACATATTGAAGGGCAGATCTTTTTTGGTTCGAAACAAAGTTTTCTTTCCTGAACACCAAAAAAAGGATGCATTTTTGAACACGCATTCTCACATTCATGGTAAAATTAATCTTCTTTATTTTGGAACAAAGTTTTCTCTTTGTGCACTTCGAATGTTCCAAAATGAACAAAAAAGGAAAAAAATGAGGAGGAACAAACTTTTTTTTTGAAAATTCTGAGTAACTAGATAGAAAATGGGCACCAACGGAGATAGATCGTGAAAAACAGTTTGGGAATGGTATTCTAATTTCTGCAGAAGGATTCATTCAACAACTCCATGAAAGTGTTTCAAAGGTGAATGATGAGTTTCCGACATGGAAAATCTCGGCCACAGAAGAGCTGATTTGCCAGCTTGTTGTGATTTAAACGYTTTTTTTTTAATTGGAATATCGACTTCTTGCTCGGTAAGTTCCTTTACATTCAACGGATTCAATTCTTTAAAAGTTCTAACTTGAACTTTAACTTGAAGTTCTCCGAGACATTAACAGAATGTGTTTCATTTTTCTCAGTTTATTACTATGAAAATCAATATGTCTTTGTTTTCAAAATATAGGCTAGATGCGCCTCTCTCGCCCAAATCAATCTGACTGCAAAAACAATTAAATCCGGAGCTAAGACGCTATTCAATTTTTCGTATACCCATTCTGTGATTAATCTTCTCCGGTTTTATTTTTCTCTTTTCTCAATTCTCGCTTTTTCGTTTGTGAAACCATATTTCATATATTTCTAATCTCATTTCTCATCAAACGAGTATCGATTTCTCTTTTCTGCAACTGAACTCTGCTCCTCAAAGGGCACCTTCCCAGACAATAGCCGGCAAAATATGTGCCAATTATAATGTGTTCCGTTGATTGAGTTGCGCGCAAAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>503 487 10</canonical_bands>
                <polymorphic_bands>990 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCATTCAACAACTCCATGA</pcr_primer_p1>
		<pcr_primer_p2>ACTGAGAAAAATGAAACACATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCATTCAACAACTCCATGAAAGTGTTTCAAAGGTGAATGATGAGTTTCCGACATGGAAAATCTCGGCCACAGAAGAGCTGATTTGCCAGCTTGTTGTGATTTAAACGTTTTTTTTTTAATTGGAATATCGACTTCTTGCTCGGTAAGTTCCTTTACATTCAACGGATTCAATTCTTTAAAAGTTCTAACTTGAACTTTAACTTGAAGTTCTCCGAGACATTAACAGAATGTGTTTCATTTTTCTCAGT</canonical_amplicon>
		<polymorphic_amplicon>ATTCATTCAACAACTCCATGAAAGTGTTTCAAAGGTGAATGATGAGTTTCCGACATGGAAAATCTCGGCCACAGAAGAGCTGATTTGCCAGCTTGTTGTGATTTAAACGYTTTTTTTTTAATTGGAATATCGACTTCTTGCTCGGTAAGTTCCTTTACATTCAACGGATTCAATTCTTTAAAAGTTCTAACTTGAACTTTAACTTGAAGTTCTCCGAGACATTAACAGAATGTGTTTCATTTTTCTCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34063</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>547839</contig_pos>
        <strand></strand>
        <context>TTAATTGGAA[T/C]ATCGACTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGCTGATTTGCCAGCTTGTTGTGATTTAAACGTTTTTTTTTTAATTGGAA</left_flank>
        <right_flank>ATCGACTTCTTGCTCGGTAAGTTCCTTTACATTCAACGGATTCAATTCTT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCCAGAACACCAAAAAGTACGGATGTATTTTGGAACATGCACTATTGCATGCATGGCGAAAAAAAGGCTGACATATTGAAGGGCAGATCTTTTTTGGTTCGAAACAAAGTTTTCTTTCCTGAACACCAAAAAAAGGATGCATTTTTGAACACGCATTCTCACATTCATGGTAAAATTAATCTTCTTTATTTTGGAACAAAGTTTTCTCTTTGTGCACTTCGAATGTTCCAAAATGAACAAAAAAGGAAAAAAATGAGGAGGAACAAACTTTTTTTTTGAAAATTCTGAGTAACTAGATAGAAAATGGGCACCAACGGAGATAGATCGTGAAAAACAGTTTGGGAATGGTATTCTAATTTCTGCAGAAGGATTCATTCAACAACTCCATGAAAGTGTTTCAAAGGTGAATGATGAGTTTCCGACATGGAAAATCTCGGCCACAGAAGAGCTGATTTGCCAGCTTGTTGTGATTTAAACGTTTTTTTTTTAATTGGAATATCGACTTCTTGCTCGGTAAGTTCCTTTACATTCAACGGATTCAATTCTTTAAAAGTTCTAACTTGAACTTTAACTTGAAGTTCTCCGAGACATTAACAGAATGTGTTTCATTTTTCTCAGTTTATTACTATGAAAATCAATATGTCTTTGTTTTCAAAATATAGGCTAGATGCGCCTCTCTCGCCCAAATCAATCTGACTGCAAAAACAATTAAATCCGGAGCTAAGACGCTATTCAATTTTTCGTATACCCATTCTGTGATTAATCTTCTCCGGTTTTATTTTTCTCTTTTCTCAATTCTCGCTTTTTCGTTTGTGAAACCATATTTCATATATTTCTAATCTCATTTCTCATCAAACGAGTATCGATTTCTCTTTTCTGCAACTGAACTCTGCTCCTCAAAGGGCACCTTCCCAGACAATAGCCGGCAAAATATGTGCCAATTATAATGTGTTCCGTTGATTGAGTTGCGCGCAAAACAAGTGAAATATGAGGAGAG</canonical>
            <polymorphic>TTTTCCAGAACACCAAAAAGTACGGATGTATTTTGGAACATGCACTATTGCATGCATGGCGAAAAAAAGGCTGACATATTGAAGGGCAGATCTTTTTTGGTTCGAAACAAAGTTTTCTTTCCTGAACACCAAAAAAAGGATGCATTTTTGAACACGCATTCTCACATTCATGGTAAAATTAATCTTCTTTATTTTGGAACAAAGTTTTCTCTTTGTGCACTTCGAATGTTCCAAAATGAACAAAAAAGGAAAAAAATGAGGAGGAACAAACTTTTTTTTTGAAAATTCTGAGTAACTAGATAGAAAATGGGCACCAACGGAGATAGATCGTGAAAAACAGTTTGGGAATGGTATTCTAATTTCTGCAGAAGGATTCATTCAACAACTCCATGAAAGTGTTTCAAAGGTGAATGATGAGTTTCCGACATGGAAAATCTCGGCCACAGAAGAGCTGATTTGCCAGCTTGTTGTGATTTAAACGTTTTTTTTTTAATTGGAAYATCGACTTCTTGCTCGGTAAGTTCCTTTACATTCAACGGATTCAATTCTTTAAAAGTTCTAACTTGAACTTTAACTTGAAGTTCTCCGAGACATTAACAGAATGTGTTTCATTTTTCTCAGTTTATTACTATGAAAATCAATATGTCTTTGTTTTCAAAATATAGGCTAGATGCGCCTCTCTCGCCCAAATCAATCTGACTGCAAAAACAATTAAATCCGGAGCTAAGACGCTATTCAATTTTTCGTATACCCATTCTGTGATTAATCTTCTCCGGTTTTATTTTTCTCTTTTCTCAATTCTCGCTTTTTCGTTTGTGAAACCATATTTCATATATTTCTAATCTCATTTCTCATCAAACGAGTATCGATTTCTCTTTTCTGCAACTGAACTCTGCTCCTCAAAGGGCACCTTCCCAGACAATAGCCGGCAAAATATGTGCCAATTATAATGTGTTCCGTTGATTGAGTTGCGCGCAAAACAAGTGAAATATGAGGAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCATTCAACAACTCCATGA</pcr_primer_p1>
		<pcr_primer_p2>ACTGAGAAAAATGAAACACATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCATTCAACAACTCCATGAAAGTGTTTCAAAGGTGAATGATGAGTTTCCGACATGGAAAATCTCGGCCACAGAAGAGCTGATTTGCCAGCTTGTTGTGATTTAAACGTTTTTTTTTTAATTGGAATATCGACTTCTTGCTCGGTAAGTTCCTTTACATTCAACGGATTCAATTCTTTAAAAGTTCTAACTTGAACTTTAACTTGAAGTTCTCCGAGACATTAACAGAATGTGTTTCATTTTTCTCAGT</canonical_amplicon>
		<polymorphic_amplicon>ATTCATTCAACAACTCCATGAAAGTGTTTCAAAGGTGAATGATGAGTTTCCGACATGGAAAATCTCGGCCACAGAAGAGCTGATTTGCCAGCTTGTTGTGATTTAAACGTTTTTTTTTTAATTGGAAYATCGACTTCTTGCTCGGTAAGTTCCTTTACATTCAACGGATTCAATTCTTTAAAAGTTCTAACTTGAACTTTAACTTGAAGTTCTCCGAGACATTAACAGAATGTGTTTCATTTTTCTCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34064</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>547879</contig_pos>
        <strand>+</strand>
        <context>CATTCAACGG[A/G]TTCAATTCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAATTGGAATATCGACTTCTTGCTCGGTAAGTTCCTTTACATTCAACGG</left_flank>
        <right_flank>TTCAATTCTTTAAAAGTTCTAACTTGAACTTTAACTTGAAGTTCTCCGAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCACTATTGCATGCATGGCGAAAAAAAGGCTGACATATTGAAGGGCAGATCTTTTTTGGTTCGAAACAAAGTTTTCTTTCCTGAACACCAAAAAAAGGATGCATTTTTGAACACGCATTCTCACATTCATGGTAAAATTAATCTTCTTTATTTTGGAACAAAGTTTTCTCTTTGTGCACTTCGAATGTTCCAAAATGAACAAAAAAGGAAAAAAATGAGGAGGAACAAACTTTTTTTTTGAAAATTCTGAGTAACTAGATAGAAAATGGGCACCAACGGAGATAGATCGTGAAAAACAGTTTGGGAATGGTATTCTAATTTCTGCAGAAGGATTCATTCAACAACTCCATGAAAGTGTTTCAAAGGTGAATGATGAGTTTCCGACATGGAAAATCTCGGCCACAGAAGAGCTGATTTGCCAGCTTGTTGTGATTTAAACGTTTTTTTTTTAATTGGAATATCGACTTCTTGCTCGGTAAGTTCCTTTACATTCAACGGATTCAATTCTTTAAAAGTTCTAACTTGAACTTTAACTTGAAGTTCTCCGAGACATTAACAGAATGTGTTTCATTTTTCTCAGTTTATTACTATGAAAATCAATATGTCTTTGTTTTCAAAATATAGGCTAGATGCGCCTCTCTCGCCCAAATCAATCTGACTGCAAAAACAATTAAATCCGGAGCTAAGACGCTATTCAATTTTTCGTATACCCATTCTGTGATTAATCTTCTCCGGTTTTATTTTTCTCTTTTCTCAATTCTCGCTTTTTCGTTTGTGAAACCATATTTCATATATTTCTAATCTCATTTCTCATCAAACGAGTATCGATTTCTCTTTTCTGCAACTGAACTCTGCTCCTCAAAGGGCACCTTCCCAGACAATAGCCGGCAAAATATGTGCCAATTATAATGTGTTCCGTTGATTGAGTTGCGCGCAAAACAAGTGAAATATGAGGAGAGAGACGAGAGAGTATACATTTTGCAACATATTCAGATTCTC</canonical>
            <polymorphic>TGCACTATTGCATGCATGGCGAAAAAAAGGCTGACATATTGAAGGGCAGATCTTTTTTGGTTCGAAACAAAGTTTTCTTTCCTGAACACCAAAAAAAGGATGCATTTTTGAACACGCATTCTCACATTCATGGTAAAATTAATCTTCTTTATTTTGGAACAAAGTTTTCTCTTTGTGCACTTCGAATGTTCCAAAATGAACAAAAAAGGAAAAAAATGAGGAGGAACAAACTTTTTTTTTGAAAATTCTGAGTAACTAGATAGAAAATGGGCACCAACGGAGATAGATCGTGAAAAACAGTTTGGGAATGGTATTCTAATTTCTGCAGAAGGATTCATTCAACAACTCCATGAAAGTGTTTCAAAGGTGAATGATGAGTTTCCGACATGGAAAATCTCGGCCACAGAAGAGCTGATTTGCCAGCTTGTTGTGATTTAAACGTTTTTTTTTTAATTGGAATATCGACTTCTTGCTCGGTAAGTTCCTTTACATTCAACGGRTTCAATTCTTTAAAAGTTCTAACTTGAACTTTAACTTGAAGTTCTCCGAGACATTAACAGAATGTGTTTCATTTTTCTCAGTTTATTACTATGAAAATCAATATGTCTTTGTTTTCAAAATATAGGCTAGATGCGCCTCTCTCGCCCAAATCAATCTGACTGCAAAAACAATTAAATCCGGAGCTAAGACGCTATTCAATTTTTCGTATACCCATTCTGTGATTAATCTTCTCCGGTTTTATTTTTCTCTTTTCTCAATTCTCGCTTTTTCGTTTGTGAAACCATATTTCATATATTTCTAATCTCATTTCTCATCAAACGAGTATCGATTTCTCTTTTCTGCAACTGAACTCTGCTCCTCAAAGGGCACCTTCCCAGACAATAGCCGGCAAAATATGTGCCAATTATAATGTGTTCCGTTGATTGAGTTGCGCGCAAAACAAGTGAAATATGAGGAGAGAGACGAGAGAGTATACATTTTGCAACATATTCAGATTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>495 332 167 6</canonical_bands>
                <polymorphic_bands>662 332 6</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>495 332 167 6</canonical_bands>
                <polymorphic_bands>662 332 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCATTCAACAACTCCATGA</pcr_primer_p1>
		<pcr_primer_p2>ACTGAGAAAAATGAAACACATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCATTCAACAACTCCATGAAAGTGTTTCAAAGGTGAATGATGAGTTTCCGACATGGAAAATCTCGGCCACAGAAGAGCTGATTTGCCAGCTTGTTGTGATTTAAACGTTTTTTTTTTAATTGGAATATCGACTTCTTGCTCGGTAAGTTCCTTTACATTCAACGGATTCAATTCTTTAAAAGTTCTAACTTGAACTTTAACTTGAAGTTCTCCGAGACATTAACAGAATGTGTTTCATTTTTCTCAGT</canonical_amplicon>
		<polymorphic_amplicon>ATTCATTCAACAACTCCATGAAAGTGTTTCAAAGGTGAATGATGAGTTTCCGACATGGAAAATCTCGGCCACAGAAGAGCTGATTTGCCAGCTTGTTGTGATTTAAACGTTTTTTTTTTAATTGGAATATCGACTTCTTGCTCGGTAAGTTCCTTTACATTCAACGGRTTCAATTCTTTAAAAGTTCTAACTTGAACTTTAACTTGAAGTTCTCCGAGACATTAACAGAATGTGTTTCATTTTTCTCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34065</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>568563</contig_pos>
        <strand>+</strand>
        <context>ATTAGGAATG[A/G]CGGTCTTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTTTAATCAAGCTCTGTTCATATTGTTAAAATCTGTATTAGGAATG</left_flank>
        <right_flank>CGGTCTTTCTATTGTTCCAAGATACCTTCGGTAATTTTTGCAATTTACCT</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGTAAAATGATTTTTGAGACAAAACGATTTTGAGAGGATTTAAAATTAAATGTAGAGAAGAGGACCGGTTAAATATGTTGAAACAAAAAAATGGGGATGATATTTGAAAAATTACGACACACGCTATAAGAAAAAGGTTATCGGGAAGTTTGTGGAACGTTTTAAGAAGAAAAGAGCGGTTTGGCAGTAGACAACGTAGAGGTGAAATTGAAATGGAACGAGAAGATCATTATTATAGGAGATATAATAAATTAGGTAGCTAGCTACAGTAATTTAGACTTTTAGCATTTTTCCGTGGACACGGAGACGGTAGAGACAGGTGAATTGGGCGCCGTAGTTGCTGGTTACTTCCAATTCGACAAATTTAACTGGGAAGTCAGGCTTGTGCTGGAAAACTTGGTGTTTTTATTGATTTTTTGGTCACTTTTGTAGAATATTTGTATATTCTTTTTTTTAATCAAGCTCTGTTCATATTGTTAAAATCTGTATTAGGAATGACGGTCTTTCTATTGTTCCAAGATACCTTCGGTAATTTTTGCAATTTACCTTGTAAATTTATATTTTTAGAGAAAAGGCAAAATCGAGTGAAAAAAGTGTGTTTCAAAAATTTTCTCATACTTTGTGGAATTTGTGAAATATTTTTCACTGAAAATAGTTGGAAAAGTATAATTTCAAACAATACACTTTGAAGGGGGCCTTCTATTACAGAAACCTGTCTATTTATAAAATTTCTTCCCGGAGAGCCCTTCTATTAGAGGGACCCACCTATTGGAGGGGCTCTCCTAATACATTCACGGTATATTGCCTGAATTTTCGATAGTTCGAATCAAAATATTTGCTACTAAATTGAATAGATTAGCCTTCATATTCTGAACAGGCGTTTCTAGTTTGTTCAAGGAATTTAAATGATTTCCTTGCTCACCTTGGCCATGAAGAACTGAAGTGGTGGTCCGTCAAGATCATAGGTGTAGTCCCCAATCAACACTCGTGTGCTCAAA</canonical>
            <polymorphic>TTGGTAAAATGATTTTTGAGACAAAACGATTTTGAGAGGATTTAAAATTAAATGTAGAGAAGAGGACCGGTTAAATATGTTGAAACAAAAAAATGGGGATGATATTTGAAAAATTACGACACACGCTATAAGAAAAAGGTTATCGGGAAGTTTGTGGAACGTTTTAAGAAGAAAAGAGCGGTTTGGCAGTAGACAACGTAGAGGTGAAATTGAAATGGAACGAGAAGATCATTATTATAGGAGATATAATAAATTAGGTAGCTAGCTACAGTAATTTAGACTTTTAGCATTTTTCCGTGGACACGGAGACGGTAGAGACAGGTGAATTGGGCGCCGTAGTTGCTGGTTACTTCCAATTCGACAAATTTAACTGGGAAGTCAGGCTTGTGCTGGAAAACTTGGTGTTTTTATTGATTTTTTGGTCACTTTTGTAGAATATTTGTATATTCTTTTTTTTAATCAAGCTCTGTTCATATTGTTAAAATCTGTATTAGGAATGRCGGTCTTTCTATTGTTCCAAGATACCTTCGGTAATTTTTGCAATTTACCTTGTAAATTTATATTTTTAGAGAAAAGGCAAAATCGAGTGAAAAAAGTGTGTTTCAAAAATTTTCTCATACTTTGTGGAATTTGTGAAATATTTTTCACTGAAAATAGTTGGAAAAGTATAATTTCAAACAATACACTTTGAAGGGGGCCTTCTATTACAGAAACCTGTCTATTTATAAAATTTCTTCCCGGAGAGCCCTTCTATTAGAGGGACCCACCTATTGGAGGGGCTCTCCTAATACATTCACGGTATATTGCCTGAATTTTCGATAGTTCGAATCAAAATATTTGCTACTAAATTGAATAGATTAGCCTTCATATTCTGAACAGGCGTTTCTAGTTTGTTCAAGGAATTTAAATGATTTCCTTGCTCACCTTGGCCATGAAGAACTGAAGTGGTGGTCCGTCAAGATCATAGGTGTAGTCCCCAATCAACACTCGTGTGCTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>296 270 202 191 41</canonical_bands>
                <polymorphic_bands>487 270 202 41</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAACTTGGTGTTTTTATTGAT</pcr_primer_p1>
		<pcr_primer_p2>AAATATTTCACAAATTCCACAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAAAACTTGGTGTTTTTATTGATTTTTTGGTCACTTTTGTAGAATATTTGTATATTCTTTTTTTTAATCAAGCTCTGTTCATATTGTTAAAATCTGTATTAGGAATGACGGTCTTTCTATTGTTCCAAGATACCTTCGGTAATTTTTGCAATTTACCTTGTAAATTTATATTTTTAGAGAAAAGGCAAAATCGAGTGAAAAAAGTGTGTTTCAAAAATTTTCTCATACTTTGTGGAATTTGTGAAATATTT</canonical_amplicon>
		<polymorphic_amplicon>GAAAACTTGGTGTTTTTATTGATTTTTTGGTCACTTTTGTAGAATATTTGTATATTCTTTTTTTTAATCAAGCTCTGTTCATATTGTTAAAATCTGTATTAGGAATGRCGGTCTTTCTATTGTTCCAAGATACCTTCGGTAATTTTTGCAATTTACCTTGTAAATTTATATTTTTAGAGAAAAGGCAAAATCGAGTGAAAAAAGTGTGTTTCAAAAATTTTCTCATACTTTGTGGAATTTGTGAAATATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34066</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>568673</contig_pos>
        <strand>+</strand>
        <context>GTTTCAAAAA[A/T]TTTCTCATAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATATTTTTAGAGAAAAGGCAAAATCGAGTGAAAAAAGTGTGTTTCAAAAA</left_flank>
        <right_flank>TTTCTCATACTTTGTGGAATTTGTGAAATATTTTTCACTGAAAATAGTTG</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTACGACACACGCTATAAGAAAAAGGTTATCGGGAAGTTTGTGGAACGTTTTAAGAAGAAAAGAGCGGTTTGGCAGTAGACAACGTAGAGGTGAAATTGAAATGGAACGAGAAGATCATTATTATAGGAGATATAATAAATTAGGTAGCTAGCTACAGTAATTTAGACTTTTAGCATTTTTCCGTGGACACGGAGACGGTAGAGACAGGTGAATTGGGCGCCGTAGTTGCTGGTTACTTCCAATTCGACAAATTTAACTGGGAAGTCAGGCTTGTGCTGGAAAACTTGGTGTTTTTATTGATTTTTTGGTCACTTTTGTAGAATATTTGTATATTCTTTTTTTTAATCAAGCTCTGTTCATATTGTTAAAATCTGTATTAGGAATGACGGTCTTTCTATTGTTCCAAGATACCTTCGGTAATTTTTGCAATTTACCTTGTAAATTTATATTTTTAGAGAAAAGGCAAAATCGAGTGAAAAAAGTGTGTTTCAAAAATTTTCTCATACTTTGTGGAATTTGTGAAATATTTTTCACTGAAAATAGTTGGAAAAGTATAATTTCAAACAATACACTTTGAAGGGGGCCTTCTATTACAGAAACCTGTCTATTTATAAAATTTCTTCCCGGAGAGCCCTTCTATTAGAGGGACCCACCTATTGGAGGGGCTCTCCTAATACATTCACGGTATATTGCCTGAATTTTCGATAGTTCGAATCAAAATATTTGCTACTAAATTGAATAGATTAGCCTTCATATTCTGAACAGGCGTTTCTAGTTTGTTCAAGGAATTTAAATGATTTCCTTGCTCACCTTGGCCATGAAGAACTGAAGTGGTGGTCCGTCAAGATCATAGGTGTAGTCCCCAATCAACACTCGTGTGCTCAAATCATCAATCTGCTTGTACGCCCAAACGAGAACACCCTTCGGAGCACTGGACCGATTTCCTTCTGGAGCAACTTCTTTTCCAATGTGTTCGTAGCTAATACTGGATACATC</canonical>
            <polymorphic>AAATTACGACACACGCTATAAGAAAAAGGTTATCGGGAAGTTTGTGGAACGTTTTAAGAAGAAAAGAGCGGTTTGGCAGTAGACAACGTAGAGGTGAAATTGAAATGGAACGAGAAGATCATTATTATAGGAGATATAATAAATTAGGTAGCTAGCTACAGTAATTTAGACTTTTAGCATTTTTCCGTGGACACGGAGACGGTAGAGACAGGTGAATTGGGCGCCGTAGTTGCTGGTTACTTCCAATTCGACAAATTTAACTGGGAAGTCAGGCTTGTGCTGGAAAACTTGGTGTTTTTATTGATTTTTTGGTCACTTTTGTAGAATATTTGTATATTCTTTTTTTTAATCAAGCTCTGTTCATATTGTTAAAATCTGTATTAGGAATGACGGTCTTTCTATTGTTCCAAGATACCTTCGGTAATTTTTGCAATTTACCTTGTAAATTTATATTTTTAGAGAAAAGGCAAAATCGAGTGAAAAAAGTGTGTTTCAAAAAWTTTCTCATACTTTGTGGAATTTGTGAAATATTTTTCACTGAAAATAGTTGGAAAAGTATAATTTCAAACAATACACTTTGAAGGGGGCCTTCTATTACAGAAACCTGTCTATTTATAAAATTTCTTCCCGGAGAGCCCTTCTATTAGAGGGACCCACCTATTGGAGGGGCTCTCCTAATACATTCACGGTATATTGCCTGAATTTTCGATAGTTCGAATCAAAATATTTGCTACTAAATTGAATAGATTAGCCTTCATATTCTGAACAGGCGTTTCTAGTTTGTTCAAGGAATTTAAATGATTTCCTTGCTCACCTTGGCCATGAAGAACTGAAGTGGTGGTCCGTCAAGATCATAGGTGTAGTCCCCAATCAACACTCGTGTGCTCAAATCATCAATCTGCTTGTACGCCCAAACGAGAACACCCTTCGGAGCACTGGACCGATTTCCTTCTGGAGCAACTTCTTTTCCAATGTGTTCGTAGCTAATACTGGATACATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>253 210 191 101 90 82 53 20</canonical_bands>
                <polymorphic_bands>253 210 191 101 90 82 73</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>210 169 96 82 59 54 53 52 44 42 36 30 21 20 13 9 9 1</canonical_bands>
                <polymorphic_bands>210 169 96 82 73 59 54 52 44 42 36 30 21 13 9 9 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTCTTTCTATTGTTCCAAGATA</pcr_primer_p1>
		<pcr_primer_p2>CGGGAAGAAATTTTATAAATAGAC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GGTCTTTCTATTGTTCCAAGATACCTTCGGTAATTTTTGCAATTTACCTTGTAAATTTATATTTTTAGAGAAAAGGCAAAATCGAGTGAAAAAAGTGTGTTTCAAAAATTTTCTCATACTTTGTGGAATTTGTGAAATATTTTTCACTGAAAATAGTTGGAAAAGTATAATTTCAAACAATACACTTTGAAGGGGGCCTTCTATTACAGAAACCTGTCTATTTATAAAATTTCTTCCCG</canonical_amplicon>
		<polymorphic_amplicon>GGTCTTTCTATTGTTCCAAGATACCTTCGGTAATTTTTGCAATTTACCTTGTAAATTTATATTTTTAGAGAAAAGGCAAAATCGAGTGAAAAAAGTGTGTTTCAAAAAWTTTCTCATACTTTGTGGAATTTGTGAAATATTTTTCACTGAAAATAGTTGGAAAAGTATAATTTCAAACAATACACTTTGAAGGGGGCCTTCTATTACAGAAACCTGTCTATTTATAAAATTTCTTCCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34067</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>568962</contig_pos>
        <strand>+</strand>
        <context>GTTTGTTCAA[A/G]GAATTTAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAATAGATTAGCCTTCATATTCTGAACAGGCGTTTCTAGTTTGTTCAA</left_flank>
        <right_flank>GAATTTAAATGATTTCCTTGCTCACCTTGGCCATGAAGAACTGAAGTGGT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTGTTTTTATTGATTTTTTGGTCACTTTTGTAGAATATTTGTATATTCTTTTTTTTAATCAAGCTCTGTTCATATTGTTAAAATCTGTATTAGGAATGACGGTCTTTCTATTGTTCCAAGATACCTTCGGTAATTTTTGCAATTTACCTTGTAAATTTATATTTTTAGAGAAAAGGCAAAATCGAGTGAAAAAAGTGTGTTTCAAAAATTTTCTCATACTTTGTGGAATTTGTGAAATATTTTTCACTGAAAATAGTTGGAAAAGTATAATTTCAAACAATACACTTTGAAGGGGGCCTTCTATTACAGAAACCTGTCTATTTATAAAATTTCTTCCCGGAGAGCCCTTCTATTAGAGGGACCCACCTATTGGAGGGGCTCTCCTAATACATTCACGGTATATTGCCTGAATTTTCGATAGTTCGAATCAAAATATTTGCTACTAAATTGAATAGATTAGCCTTCATATTCTGAACAGGCGTTTCTAGTTTGTTCAAGGAATTTAAATGATTTCCTTGCTCACCTTGGCCATGAAGAACTGAAGTGGTGGTCCGTCAAGATCATAGGTGTAGTCCCCAATCAACACTCGTGTGCTCAAATCATCAATCTGCTTGTACGCCCAAACGAGAACACCCTTCGGAGCACTGGACCGATTTCCTTCTGGAGCAACTTCTTTTCCAATGTGTTCGTAGCTAATACTGGATACATCAATGAAATGCGACAGCTCTACTGCAATGTAACCACGACCATCTTTGAAGCACCAGCATTCACCAGGGAAAAGCGATTTTGAGTTTCTCTGAAAAAAGAATCATCGAATTTTCCGAAGAATTTAGCTTCCTCTTACCTGAATCACAACTCTTGGTGAGTAGTGATGATAGTAGATTGGGATATCCCAAAATTTCTCCAAACGAGTGTAACTCTTGTAGGTTTCACTGCATCTGGTAGAGATGACAGCGCCACCAGAACTTTCCAAAGCGTAATCAACTTGCCCTGTCTTG</canonical>
            <polymorphic>TGGTGTTTTTATTGATTTTTTGGTCACTTTTGTAGAATATTTGTATATTCTTTTTTTTAATCAAGCTCTGTTCATATTGTTAAAATCTGTATTAGGAATGACGGTCTTTCTATTGTTCCAAGATACCTTCGGTAATTTTTGCAATTTACCTTGTAAATTTATATTTTTAGAGAAAAGGCAAAATCGAGTGAAAAAAGTGTGTTTCAAAAATTTTCTCATACTTTGTGGAATTTGTGAAATATTTTTCACTGAAAATAGTTGGAAAAGTATAATTTCAAACAATACACTTTGAAGGGGGCCTTCTATTACAGAAACCTGTCTATTTATAAAATTTCTTCCCGGAGAGCCCTTCTATTAGAGGGACCCACCTATTGGAGGGGCTCTCCTAATACATTCACGGTATATTGCCTGAATTTTCGATAGTTCGAATCAAAATATTTGCTACTAAATTGAATAGATTAGCCTTCATATTCTGAACAGGCGTTTCTAGTTTGTTCAARGAATTTAAATGATTTCCTTGCTCACCTTGGCCATGAAGAACTGAAGTGGTGGTCCGTCAAGATCATAGGTGTAGTCCCCAATCAACACTCGTGTGCTCAAATCATCAATCTGCTTGTACGCCCAAACGAGAACACCCTTCGGAGCACTGGACCGATTTCCTTCTGGAGCAACTTCTTTTCCAATGTGTTCGTAGCTAATACTGGATACATCAATGAAATGCGACAGCTCTACTGCAATGTAACCACGACCATCTTTGAAGCACCAGCATTCACCAGGGAAAAGCGATTTTGAGTTTCTCTGAAAAAAGAATCATCGAATTTTCCGAAGAATTTAGCTTCCTCTTACCTGAATCACAACTCTTGGTGAGTAGTGATGATAGTAGATTGGGATATCCCAAAATTTCTCCAAACGAGTGTAACTCTTGTAGGTTTCACTGCATCTGGTAGAGATGACAGCGCCACCAGAACTTTCCAAAGCGTAATCAACTTGCCCTGTCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAAATTGAATAGATTAGCCTTCAT</pcr_primer_p1>
		<pcr_primer_p2>CTACGAACACATTGGAAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAAATTGAATAGATTAGCCTTCATATTCTGAACAGGCGTTTCTAGTTTGTTCAAGGAATTTAAATGATTTCCTTGCTCACCTTGGCCATGAAGAACTGAAGTGGTGGTCCGTCAAGATCATAGGTGTAGTCCCCAATCAACACTCGTGTGCTCAAATCATCAATCTGCTTGTACGCCCAAACGAGAACACCCTTCGGAGCACTGGACCGATTTCCTTCTGGAGCAACTTCTTTTCCAATGTGTTCGTAG</canonical_amplicon>
		<polymorphic_amplicon>CTAAATTGAATAGATTAGCCTTCATATTCTGAACAGGCGTTTCTAGTTTGTTCAARGAATTTAAATGATTTCCTTGCTCACCTTGGCCATGAAGAACTGAAGTGGTGGTCCGTCAAGATCATAGGTGTAGTCCCCAATCAACACTCGTGTGCTCAAATCATCAATCTGCTTGTACGCCCAAACGAGAACACCCTTCGGAGCACTGGACCGATTTCCTTCTGGAGCAACTTCTTTTCCAATGTGTTCGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34068</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>570440</contig_pos>
        <strand>+</strand>
        <context>AAATATAATG[C/T]GAGCMAAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGTATTGTCCTGAAAATCCATAAATTGGGCGCTACCTCAAAATATAATG</left_flank>
        <right_flank>GAGCAAAATAGAACTGTACCAAAATAGATCGAGACGCAAAATAGAACTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGTAGGTGTGATGGCTTGTGGGATTGGAATCACTTGAACTGGATCCTCCGGCGCGTATTGACTGATCTTGATCCATCCGCGAGTGATCAAACCAACTGGATAGGTCACCAAGAAAGTAGCCAAGTCGAAGATGCTAGTCACTCCAAGCACCACCATGTCATAAATCCATCTCAAAGCAAGCCAGATTGGTCGTAGGAGCTCTTGGTAGTTTCCGCTAAAGAAGCCAGCAACTGGAGCGTAGATGTAGTTGTCTAAAAGAAGTTGAGTTAGTTAATAGAGAAAAGAAGTTGGAGTTTCTTACAGAAAAAGTCGGAGATTCCATATACGACAGTTTTCACTCCTGAGATGATGGCGGTTTGGGTGTTGGTGGAGATGTTTAGGAGACCAGAGAAGAAGTAGGCAAAGAAGTCGTAGATTCCGGAGAACGCATTGGAGAAGAAATCGTTGGTGTATTGTCCTGAAAATCCATAAATTGGGCGCTACCTCAAAATATAATGTGAGCAAAATAGAACTGTACCAAAATAGATCGAGACGCAAAATAGAACTGCGTGAAAAAGAACTTCTCTGAAATAGAACTGCTCTTACATAGAACCGCGTGAAATAGAACTGTTCTGTAATAGAACTGTTCTGGAATAGAACTGCTCTGGAATAGAACTGCTCTGGAATAGAACTGCTCTGGAATAGAACTGCTCTGGAATAAAACTGCTCTGGAATAGAACTGCTCTGGAATAGAACTGCTAAAGAGGAAAATAGAACTGTGATTGCTGCAAGCGACAGATCGTGTTTTTTTCATGTTTTTTTATACGTTTTCACTATTAATTTGAACATTGGCCGCTCCCTTCATGCACTTGTTACAAAGTATCATGGCTTATCTCCACTGAAAATGTGTGATCTAATAGAACGTCCAAATTCGAGGATAATCATACGTCAAAAGACGCCGCCAAGATTGCTCTGAACCATACCTTTCGAGTGAGAATACTCCACGAACTCCCTATGCC</canonical>
            <polymorphic>GGAGTAGGTGTGATGGCTTGTGGGATTGGAATCACTTGAACTGGATCCTCCGGCGCGTATTGACTGATCTTGATCCATCCGCGAGTGATCAAACCAACTGGATAGGTCACCAAGAAAGTAGCCAAGTCGAAGATGCTAGTCACTCCAAGCACCACCATGTCATAAATCCATCTCAAAGCAAGCCAGATTGGTCGTAGGAGCTCTTGGTAGTTTCCGCTAAAGAAGCCAGCAACTGGAGCGTAGATGTAGTTGTCTAAAAGAAGTTGAGTTAGTTAATAGAGAAAAGAAGTTGGAGTTTCTTACAGAAAAAGTCGGAGATTCCATATACGACAGTTTTCACTCCTGAGATGATGGCGGTTTGGGTGTTGGTGGAGATGTTTAGGAGACCAGAGAAGAAGTAGGCAAAGAAGTCGTAGATTCCGGAGAACGCATTGGAGAAGAAATCGTTGGTGTATTGTCCTGAAAATCCATAAATTGGGCGCTACCTCAAAATATAATGYGAGCAAAATAGAACTGTACCAAAATAGATCGAGACGCAAAATAGAACTGCGTGAAAAAGAACTTCTCTGAAATAGAACTGCTCTTACATAGAACCGCGTGAAATAGAACTGTTCTGTAATAGAACTGTTCTGGAATAGAACTGCTCTGGAATAGAACTGCTCTGGAATAGAACTGCTCTGGAATAGAACTGCTCTGGAATAAAACTGCTCTGGAATAGAACTGCTCTGGAATAGAACTGCTAAAGAGGAAAATAGAACTGTGATTGCTGCAAGCGACAGATCGTGTTTTTTTCATGTTTTTTTATACGTTTTCACTATTAATTTGAACATTGGCCGCTCCCTTCATGCACTTGTTACAAAGTATCATGGCTTATCTCCACTGAAAATGTGTGATCTAATAGAACGTCCAAATTCGAGGATAATCATACGTCAAAAGACGCCGCCAAGATTGCTCTGAACCATACCTTTCGAGTGAGAATACTCCACGAACTCCCTATGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>185 162 82 81 53 52 49 47 35 33 30 29 26 23 22 15 12 11 11 10 10 9 6 3 2 2</canonical_bands>
                <polymorphic_bands>185 162 101 82 81 53 47 35 33 30 29 26 23 22 15 12 11 11 10 10 9 6 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAAATCGTTGGTGTATTGTC</pcr_primer_p1>
		<pcr_primer_p2>TCTATTCCAGAGCAGTTCTATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAAATCGTTGGTGTATTGTCCTGAAAATCCATAAATTGGGCGCTACCTCAAAATATAATGTGAGCAAAATAGAACTGTACCAAAATAGATCGAGACGCAAAATAGAACTGCGTGAAAAAGAACTTCTCTGAAATAGAACTGCTCTTACATAGAACCGCGTGAAATAGAACTGTTCTGTAATAGAACTGTTCTGGAATAGAACTGCTCTGGAATAGA</canonical_amplicon>
		<polymorphic_amplicon>AAGAAATCGTTGGTGTATTGTCCTGAAAATCCATAAATTGGGCGCTACCTCAAAATATAATGYGAGCAAAATAGAACTGTACCAAAATAGATCGAGACGCAAAATAGAACTGCGTGAAAAAGAACTTCTCTGAAATAGAACTGCTCTTACATAGAACCGCGTGAAATAGAACTGTTCTGTAATAGAACTGTTCTGGAATAGAACTGCTCTGGAATAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34069</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>570445</contig_pos>
        <strand>+</strand>
        <context>TAATGYGAGC[A/C]AAATAGAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGTCCTGAAAATCCATAAATTGGGCGCTACCTCAAAATATAATGTGAGC</left_flank>
        <right_flank>AAATAGAACTGTACCAAAATAGATCGAGACGCAAAATAGAACTGCGTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTGTGATGGCTTGTGGGATTGGAATCACTTGAACTGGATCCTCCGGCGCGTATTGACTGATCTTGATCCATCCGCGAGTGATCAAACCAACTGGATAGGTCACCAAGAAAGTAGCCAAGTCGAAGATGCTAGTCACTCCAAGCACCACCATGTCATAAATCCATCTCAAAGCAAGCCAGATTGGTCGTAGGAGCTCTTGGTAGTTTCCGCTAAAGAAGCCAGCAACTGGAGCGTAGATGTAGTTGTCTAAAAGAAGTTGAGTTAGTTAATAGAGAAAAGAAGTTGGAGTTTCTTACAGAAAAAGTCGGAGATTCCATATACGACAGTTTTCACTCCTGAGATGATGGCGGTTTGGGTGTTGGTGGAGATGTTTAGGAGACCAGAGAAGAAGTAGGCAAAGAAGTCGTAGATTCCGGAGAACGCATTGGAGAAGAAATCGTTGGTGTATTGTCCTGAAAATCCATAAATTGGGCGCTACCTCAAAATATAATGTGAGCAAAATAGAACTGTACCAAAATAGATCGAGACGCAAAATAGAACTGCGTGAAAAAGAACTTCTCTGAAATAGAACTGCTCTTACATAGAACCGCGTGAAATAGAACTGTTCTGTAATAGAACTGTTCTGGAATAGAACTGCTCTGGAATAGAACTGCTCTGGAATAGAACTGCTCTGGAATAGAACTGCTCTGGAATAAAACTGCTCTGGAATAGAACTGCTCTGGAATAGAACTGCTAAAGAGGAAAATAGAACTGTGATTGCTGCAAGCGACAGATCGTGTTTTTTTCATGTTTTTTTATACGTTTTCACTATTAATTTGAACATTGGCCGCTCCCTTCATGCACTTGTTACAAAGTATCATGGCTTATCTCCACTGAAAATGTGTGATCTAATAGAACGTCCAAATTCGAGGATAATCATACGTCAAAAGACGCCGCCAAGATTGCTCTGAACCATACCTTTCGAGTGAGAATACTCCACGAACTCCCTATGCCCCTTT</canonical>
            <polymorphic>AGGTGTGATGGCTTGTGGGATTGGAATCACTTGAACTGGATCCTCCGGCGCGTATTGACTGATCTTGATCCATCCGCGAGTGATCAAACCAACTGGATAGGTCACCAAGAAAGTAGCCAAGTCGAAGATGCTAGTCACTCCAAGCACCACCATGTCATAAATCCATCTCAAAGCAAGCCAGATTGGTCGTAGGAGCTCTTGGTAGTTTCCGCTAAAGAAGCCAGCAACTGGAGCGTAGATGTAGTTGTCTAAAAGAAGTTGAGTTAGTTAATAGAGAAAAGAAGTTGGAGTTTCTTACAGAAAAAGTCGGAGATTCCATATACGACAGTTTTCACTCCTGAGATGATGGCGGTTTGGGTGTTGGTGGAGATGTTTAGGAGACCAGAGAAGAAGTAGGCAAAGAAGTCGTAGATTCCGGAGAACGCATTGGAGAAGAAATCGTTGGTGTATTGTCCTGAAAATCCATAAATTGGGCGCTACCTCAAAATATAATGTGAGCMAAATAGAACTGTACCAAAATAGATCGAGACGCAAAATAGAACTGCGTGAAAAAGAACTTCTCTGAAATAGAACTGCTCTTACATAGAACCGCGTGAAATAGAACTGTTCTGTAATAGAACTGTTCTGGAATAGAACTGCTCTGGAATAGAACTGCTCTGGAATAGAACTGCTCTGGAATAGAACTGCTCTGGAATAAAACTGCTCTGGAATAGAACTGCTCTGGAATAGAACTGCTAAAGAGGAAAATAGAACTGTGATTGCTGCAAGCGACAGATCGTGTTTTTTTCATGTTTTTTTATACGTTTTCACTATTAATTTGAACATTGGCCGCTCCCTTCATGCACTTGTTACAAAGTATCATGGCTTATCTCCACTGAAAATGTGTGATCTAATAGAACGTCCAAATTCGAGGATAATCATACGTCAAAAGACGCCGCCAAGATTGCTCTGAACCATACCTTTCGAGTGAGAATACTCCACGAACTCCCTATGCCCCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTGTCCTGAAAATCCATAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTATTCCAGAGCAGTTCTATTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATTGTCCTGAAAATCCATAAATTGGGCGCTACCTCAAAATATAATGTGAGCAAAATAGAACTGTACCAAAATAGATCGAGACGCAAAATAGAACTGCGTGAAAAAGAACTTCTCTGAAATAGAACTGCTCTTACATAGAACCGCGTGAAATAGAACTGTTCTGTAATAGAACTGTTCTGGAATAGAACTGCTCTGGAATAGAACTGCTCTGGAATAGAACTGCTCTGGAATAGAACTGCTCTGGAATAAA</canonical_amplicon>
		<polymorphic_amplicon>TATTGTCCTGAAAATCCATAAATTGGGCGCTACCTCAAAATATAATGTGAGCMAAATAGAACTGTACCAAAATAGATCGAGACGCAAAATAGAACTGCGTGAAAAAGAACTTCTCTGAAATAGAACTGCTCTTACATAGAACCGCGTGAAATAGAACTGTTCTGTAATAGAACTGTTCTGGAATAGAACTGCTCTGGAATAGAACTGCTCTGGAATAGAACTGCTCTGGAATAGAACTGCTCTGGAATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34070</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>571085</contig_pos>
        <strand>+</strand>
        <context>CTGAGCCACG[C/T]GTGCAGAGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTGCGGAAGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACG</left_flank>
        <right_flank>GTGCAGAGAGAAAGCGGCCGCCCGATTGCATACATAAAGGCGAGGACGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGGAATAGAACTGCTCTGGAATAGAACTGCTCTGGAATAGAACTGCTCTGGAATAAAACTGCTCTGGAATAGAACTGCTCTGGAATAGAACTGCTAAAGAGGAAAATAGAACTGTGATTGCTGCAAGCGACAGATCGTGTTTTTTTCATGTTTTTTTATACGTTTTCACTATTAATTTGAACATTGGCCGCTCCCTTCATGCACTTGTTACAAAGTATCATGGCTTATCTCCACTGAAAATGTGTGATCTAATAGAACGTCCAAATTCGAGGATAATCATACGTCAAAAGACGCCGCCAAGATTGCTCTGAACCATACCTTTCGAGTGAGAATACTCCACGAACTCCCTATGCCCCTTTTTCTGATCTAAATCTTTTAAAGATGGGGGACATGAAAAAAAAATAATGTTCTCGAAATGCCGTTTAAATATGCCCCCCGAGGAGTTGAACTTGCGGAAGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGTGCAGAGAGAAAGCGGCCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTTCACCGTCACGGTATGCATACCCTAATTCCAAAAAACCTCCGAAAAATCTCCTGTCCCCCCACCTTTAAGATCTTTTGTTTACGCTAAGAGTTGATTATGATACGTATTCTTCTTTTCTTTAATCTATGTCTACTTTCTTTGTAATATATTTTTTATCTCCGTTTTTAAAAGTTCCATTTTCCTTCATAACAGTTCTATTCGAGACCAGTTCTGTTTCAGAACAGTTCTATTCCAGAACATTTCTATTTCACGCGGTTCTATGTAAGAGCAGTTCTATTTCAGAACAGTTCAATTATAGAGCAGTTCTTTTTCACGCAGTTCTATTTTGGCACAGTTCTATTTTGCTCTTCTATTTTCTATTTCGAGGTAGCGCCATAAAAGGAAATTTATAAATTTGCTTTTATCCGTCTCTATACTTG</canonical>
            <polymorphic>CTGGAATAGAACTGCTCTGGAATAGAACTGCTCTGGAATAGAACTGCTCTGGAATAAAACTGCTCTGGAATAGAACTGCTCTGGAATAGAACTGCTAAAGAGGAAAATAGAACTGTGATTGCTGCAAGCGACAGATCGTGTTTTTTTCATGTTTTTTTATACGTTTTCACTATTAATTTGAACATTGGCCGCTCCCTTCATGCACTTGTTACAAAGTATCATGGCTTATCTCCACTGAAAATGTGTGATCTAATAGAACGTCCAAATTCGAGGATAATCATACGTCAAAAGACGCCGCCAAGATTGCTCTGAACCATACCTTTCGAGTGAGAATACTCCACGAACTCCCTATGCCCCTTTTTCTGATCTAAATCTTTTAAAGATGGGGGACATGAAAAAAAAATAATGTTCTCGAAATGCCGTTTAAATATGCCCCCCGAGGAGTTGAACTTGCGGAAGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGYGTGCAGAGAGAAAGCGGCCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTTCACCGTCACGGTATGCATACCCTAATTCCAAAAAACCTCCGAAAAATCTCCTGTCCCCCCACCTTTAAGATCTTTTGTTTACGCTAAGAGTTGATTATGATACGTATTCTTCTTTTCTTTAATCTATGTCTACTTTCTTTGTAATATATTTTTTATCTCCGTTTTTAAAAGTTCCATTTTCCTTCATAACAGTTCTATTCGAGACCAGTTCTGTTTCAGAACAGTTCTATTCCAGAACATTTCTATTTCACGCGGTTCTATGTAAGAGCAGTTCTATTTCAGAACAGTTCAATTATAGAGCAGTTCTTTTTCACGCAGTTCTATTTTGGCACAGTTCTATTTTGCTCTTCTATTTTCTATTTCGAGGTAGCGCCATAAAAGGAAATTTATAAATTTGCTTTTATCCGTCTCTATACTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 334 167</canonical_bands>
                <polymorphic_bands>833 167</polymorphic_bands>
            </assay>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 375 126</canonical_bands>
                <polymorphic_bands>874 126</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGCGT</site>
                <isoschizomers>
                    <enzyme>MluI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACTCCACGAACTCCCTATG</pcr_primer_p1>
		<pcr_primer_p2>GAACAACGCTTAATGTCACTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATACTCCACGAACTCCCTATGCCCCTTTTTCTGATCTAAATCTTTTAAAGATGGGGGACATGAAAAAAAAATAATGTTCTCGAAATGCCGTTTAAATATGCCCCCCGAGGAGTTGAACTTGCGGAAGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGTGCAGAGAGAAAGCGGCCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTTC</canonical_amplicon>
		<polymorphic_amplicon>ATACTCCACGAACTCCCTATGCCCCTTTTTCTGATCTAAATCTTTTAAAGATGGGGGACATGAAAAAAAAATAATGTTCTCGAAATGCCGTTTAAATATGCCCCCCGAGGAGTTGAACTTGCGGAAGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGYGTGCAGAGAGAAAGCGGCCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34071</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>571103</contig_pos>
        <strand>+</strand>
        <context>GAGAAAGCGG[C/T]CGCCCGATTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGTGCAGAGAGAAAGCGG</left_flank>
        <right_flank>CGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGAC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAATAGAACTGCTCTGGAATAGAACTGCTCTGGAATAAAACTGCTCTGGAATAGAACTGCTCTGGAATAGAACTGCTAAAGAGGAAAATAGAACTGTGATTGCTGCAAGCGACAGATCGTGTTTTTTTCATGTTTTTTTATACGTTTTCACTATTAATTTGAACATTGGCCGCTCCCTTCATGCACTTGTTACAAAGTATCATGGCTTATCTCCACTGAAAATGTGTGATCTAATAGAACGTCCAAATTCGAGGATAATCATACGTCAAAAGACGCCGCCAAGATTGCTCTGAACCATACCTTTCGAGTGAGAATACTCCACGAACTCCCTATGCCCCTTTTTCTGATCTAAATCTTTTAAAGATGGGGGACATGAAAAAAAAATAATGTTCTCGAAATGCCGTTTAAATATGCCCCCCGAGGAGTTGAACTTGCGGAAGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGTGCAGAGAGAAAGCGGCCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTTCACCGTCACGGTATGCATACCCTAATTCCAAAAAACCTCCGAAAAATCTCCTGTCCCCCCACCTTTAAGATCTTTTGTTTACGCTAAGAGTTGATTATGATACGTATTCTTCTTTTCTTTAATCTATGTCTACTTTCTTTGTAATATATTTTTTATCTCCGTTTTTAAAAGTTCCATTTTCCTTCATAACAGTTCTATTCGAGACCAGTTCTGTTTCAGAACAGTTCTATTCCAGAACATTTCTATTTCACGCGGTTCTATGTAAGAGCAGTTCTATTTCAGAACAGTTCAATTATAGAGCAGTTCTTTTTCACGCAGTTCTATTTTGGCACAGTTCTATTTTGCTCTTCTATTTTCTATTTCGAGGTAGCGCCATAAAAGGAAATTTATAAATTTGCTTTTATCCGTCTCTATACTTGTCGGTGAGCCGATTCTGG</canonical>
            <polymorphic>GGAATAGAACTGCTCTGGAATAGAACTGCTCTGGAATAAAACTGCTCTGGAATAGAACTGCTCTGGAATAGAACTGCTAAAGAGGAAAATAGAACTGTGATTGCTGCAAGCGACAGATCGTGTTTTTTTCATGTTTTTTTATACGTTTTCACTATTAATTTGAACATTGGCCGCTCCCTTCATGCACTTGTTACAAAGTATCATGGCTTATCTCCACTGAAAATGTGTGATCTAATAGAACGTCCAAATTCGAGGATAATCATACGTCAAAAGACGCCGCCAAGATTGCTCTGAACCATACCTTTCGAGTGAGAATACTCCACGAACTCCCTATGCCCCTTTTTCTGATCTAAATCTTTTAAAGATGGGGGACATGAAAAAAAAATAATGTTCTCGAAATGCCGTTTAAATATGCCCCCCGAGGAGTTGAACTTGCGGAAGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGTGCAGAGAGAAAGCGGYCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTTCACCGTCACGGTATGCATACCCTAATTCCAAAAAACCTCCGAAAAATCTCCTGTCCCCCCACCTTTAAGATCTTTTGTTTACGCTAAGAGTTGATTATGATACGTATTCTTCTTTTCTTTAATCTATGTCTACTTTCTTTGTAATATATTTTTTATCTCCGTTTTTAAAAGTTCCATTTTCCTTCATAACAGTTCTATTCGAGACCAGTTCTGTTTCAGAACAGTTCTATTCCAGAACATTTCTATTTCACGCGGTTCTATGTAAGAGCAGTTCTATTTCAGAACAGTTCAATTATAGAGCAGTTCTTTTTCACGCAGTTCTATTTTGGCACAGTTCTATTTTGCTCTTCTATTTTCTATTTCGAGGTAGCGCCATAAAAGGAAATTTATAAATTTGCTTTTATCCGTCTCTATACTTGTCGGTGAGCCGATTCTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>500 185 171 106 38</canonical_bands>
                <polymorphic_bands>538 185 171 106</polymorphic_bands>
            </assay>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CGGCCG</site>
                <isoschizomers>
                    <enzyme>BseX3I</enzyme>
                    <enzyme>BstZI</enzyme>
                    <enzyme>EagI</enzyme>
                    <enzyme>EclXI</enzyme>
                    <enzyme>Eco52I</enzyme>
                    <enzyme>XmaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 329 170</canonical_bands>
                <polymorphic_bands>830 170</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>501 180 106 106 67 35 5</canonical_bands>
                <polymorphic_bands>536 180 106 106 67 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGGCCGC</site>
                <isoschizomers>
                    <enzyme>CciNI</enzyme>
                    <enzyme>NotI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 329 168</canonical_bands>
                <polymorphic_bands>832 168</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>456 270 170 36 35 23 10</canonical_bands>
                <polymorphic_bands>456 270 170 58 36 10</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>501 180 173 106 35 5</canonical_bands>
                <polymorphic_bands>536 180 173 106 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACTCCACGAACTCCCTATG</pcr_primer_p1>
		<pcr_primer_p2>GAACAACGCTTAATGTCACTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATACTCCACGAACTCCCTATGCCCCTTTTTCTGATCTAAATCTTTTAAAGATGGGGGACATGAAAAAAAAATAATGTTCTCGAAATGCCGTTTAAATATGCCCCCCGAGGAGTTGAACTTGCGGAAGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGTGCAGAGAGAAAGCGGCCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTTC</canonical_amplicon>
		<polymorphic_amplicon>ATACTCCACGAACTCCCTATGCCCCTTTTTCTGATCTAAATCTTTTAAAGATGGGGGACATGAAAAAAAAATAATGTTCTCGAAATGCCGTTTAAATATGCCCCCCGAGGAGTTGAACTTGCGGAAGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGTGCAGAGAGAAAGCGGYCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34072</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>571443</contig_pos>
        <strand>+</strand>
        <context>AGCAGTTCTA[G/T]TYCAGAACAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTATTCCAGAACATTTCTATTTCACGCGGTTCTATGTAAGAGCAGTTCTA</left_flank>
        <right_flank>TTCAGAACAGTTCAATTATAGAGCAGTTCTTTTTCACGCAGTTCTATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCTGATCTAAATCTTTTAAAGATGGGGGACATGAAAAAAAAATAATGTTCTCGAAATGCCGTTTAAATATGCCCCCCGAGGAGTTGAACTTGCGGAAGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGTGCAGAGAGAAAGCGGCCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTTCACCGTCACGGTATGCATACCCTAATTCCAAAAAACCTCCGAAAAATCTCCTGTCCCCCCACCTTTAAGATCTTTTGTTTACGCTAAGAGTTGATTATGATACGTATTCTTCTTTTCTTTAATCTATGTCTACTTTCTTTGTAATATATTTTTTATCTCCGTTTTTAAAAGTTCCATTTTCCTTCATAACAGTTCTATTCGAGACCAGTTCTGTTTCAGAACAGTTCTATTCCAGAACATTTCTATTTCACGCGGTTCTATGTAAGAGCAGTTCTATTTCAGAACAGTTCAATTATAGAGCAGTTCTTTTTCACGCAGTTCTATTTTGGCACAGTTCTATTTTGCTCTTCTATTTTCTATTTCGAGGTAGCGCCATAAAAGGAAATTTATAAATTTGCTTTTATCCGTCTCTATACTTGTCGGTGAGCCGATTCTGGGCCAGCACAATCCGGCTGATAAATTGTTTGCTTCAAAATCGAAATTGTGAGCAGCACAGCATACCAAATGATAGAACTCGAAAAGCTCTACAATTTTCGATAAGAATCAATCCGTTTCAAAAAAGGTATTATAGTCCGGATGGAATTTTTTTTGCCGGGCGAACGATTTATGCCCAACCCGATTGTTAAAAGTCGGTCTGCACTGATTCAACCTTGTTGAAGGCTGTAGAGCTCGCCGAGTTATATCGTCTGGTAAGCTTTTGGCCCACGATTCCAATTTTGAGTTATCAGCGAGATATCAGCTAGACTAGGCTGGCCTGGATCTTTTTTTTCAACAAAT</canonical>
            <polymorphic>TTTTCTGATCTAAATCTTTTAAAGATGGGGGACATGAAAAAAAAATAATGTTCTCGAAATGCCGTTTAAATATGCCCCCCGAGGAGTTGAACTTGCGGAAGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGTGCAGAGAGAAAGCGGCCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTTCACCGTCACGGTATGCATACCCTAATTCCAAAAAACCTCCGAAAAATCTCCTGTCCCCCCACCTTTAAGATCTTTTGTTTACGCTAAGAGTTGATTATGATACGTATTCTTCTTTTCTTTAATCTATGTCTACTTTCTTTGTAATATATTTTTTATCTCCGTTTTTAAAAGTTCCATTTTCCTTCATAACAGTTCTATTCGAGACCAGTTCTGTTTCAGAACAGTTCTATTCCAGAACATTTCTATTTCACGCGGTTCTATGTAAGAGCAGTTCTAKTTCAGAACAGTTCAATTATAGAGCAGTTCTTTTTCACGCAGTTCTATTTTGGCACAGTTCTATTTTGCTCTTCTATTTTCTATTTCGAGGTAGCGCCATAAAAGGAAATTTATAAATTTGCTTTTATCCGTCTCTATACTTGTCGGTGAGCCGATTCTGGGCCAGCACAATCCGGCTGATAAATTGTTTGCTTCAAAATCGAAATTGTGAGCAGCACAGCATACCAAATGATAGAACTCGAAAAGCTCTACAATTTTCGATAAGAATCAATCCGTTTCAAAAAAGGTATTATAGTCCGGATGGAATTTTTTTTGCCGGGCGAACGATTTATGCCCAACCCGATTGTTAAAAGTCGGTCTGCACTGATTCAACCTTGTTGAAGGCTGTAGAGCTCGCCGAGTTATATCGTCTGGTAAGCTTTTGGCCCACGATTCCAATTTTGAGTTATCAGCGAGATATCAGCTAGACTAGGCTGGCCTGGATCTTTTTTTTCAACAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATTTTCCTTCATAACAGTTC</pcr_primer_p1>
		<pcr_primer_p2>CGACAAGTATAGAGACGGATAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCATTTTCCTTCATAACAGTTCTATTCGAGACCAGTTCTGTTTCAGAACAGTTCTATTCCAGAACATTTCTATTTCACGCGGTTCTATGTAAGAGCAGTTCTATTTCAGAACAGTTCAATTATAGAGCAGTTCTTTTTCACGCAGTTCTATTTTGGCACAGTTCTATTTTGCTCTTCTATTTTCTATTTCGAGGTAGCGCCATAAAAGGAAATTTATAAATTTGCTTTTATCCGTCTCTATACTTGTCG</canonical_amplicon>
		<polymorphic_amplicon>CCATTTTCCTTCATAACAGTTCTATTCGAGACCAGTTCTGTTTCAGAACAGTTCTATTCCAGAACATTTCTATTTCACGCGGTTCTATGTAAGAGCAGTTCTAKTTCAGAACAGTTCAATTATAGAGCAGTTCTTTTTCACGCAGTTCTATTTTGGCACAGTTCTATTTTGCTCTTCTATTTTCTATTTCGAGGTAGCGCCATAAAAGGAAATTTATAAATTTGCTTTTATCCGTCTCTATACTTGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34073</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>571445</contig_pos>
        <strand>+</strand>
        <context>CAGTTCTAKT[C/T]CAGAACAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCCAGAACATTTCTATTTCACGCGGTTCTATGTAAGAGCAGTTCTATT</left_flank>
        <right_flank>CAGAACAGTTCAATTATAGAGCAGTTCTTTTTCACGCAGTTCTATTTTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGATCTAAATCTTTTAAAGATGGGGGACATGAAAAAAAAATAATGTTCTCGAAATGCCGTTTAAATATGCCCCCCGAGGAGTTGAACTTGCGGAAGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGTGCAGAGAGAAAGCGGCCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTTCACCGTCACGGTATGCATACCCTAATTCCAAAAAACCTCCGAAAAATCTCCTGTCCCCCCACCTTTAAGATCTTTTGTTTACGCTAAGAGTTGATTATGATACGTATTCTTCTTTTCTTTAATCTATGTCTACTTTCTTTGTAATATATTTTTTATCTCCGTTTTTAAAAGTTCCATTTTCCTTCATAACAGTTCTATTCGAGACCAGTTCTGTTTCAGAACAGTTCTATTCCAGAACATTTCTATTTCACGCGGTTCTATGTAAGAGCAGTTCTATTTCAGAACAGTTCAATTATAGAGCAGTTCTTTTTCACGCAGTTCTATTTTGGCACAGTTCTATTTTGCTCTTCTATTTTCTATTTCGAGGTAGCGCCATAAAAGGAAATTTATAAATTTGCTTTTATCCGTCTCTATACTTGTCGGTGAGCCGATTCTGGGCCAGCACAATCCGGCTGATAAATTGTTTGCTTCAAAATCGAAATTGTGAGCAGCACAGCATACCAAATGATAGAACTCGAAAAGCTCTACAATTTTCGATAAGAATCAATCCGTTTCAAAAAAGGTATTATAGTCCGGATGGAATTTTTTTTGCCGGGCGAACGATTTATGCCCAACCCGATTGTTAAAAGTCGGTCTGCACTGATTCAACCTTGTTGAAGGCTGTAGAGCTCGCCGAGTTATATCGTCTGGTAAGCTTTTGGCCCACGATTCCAATTTTGAGTTATCAGCGAGATATCAGCTAGACTAGGCTGGCCTGGATCTTTTTTTTCAACAAATAT</canonical>
            <polymorphic>TTCTGATCTAAATCTTTTAAAGATGGGGGACATGAAAAAAAAATAATGTTCTCGAAATGCCGTTTAAATATGCCCCCCGAGGAGTTGAACTTGCGGAAGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGTGCAGAGAGAAAGCGGCCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTTCACCGTCACGGTATGCATACCCTAATTCCAAAAAACCTCCGAAAAATCTCCTGTCCCCCCACCTTTAAGATCTTTTGTTTACGCTAAGAGTTGATTATGATACGTATTCTTCTTTTCTTTAATCTATGTCTACTTTCTTTGTAATATATTTTTTATCTCCGTTTTTAAAAGTTCCATTTTCCTTCATAACAGTTCTATTCGAGACCAGTTCTGTTTCAGAACAGTTCTATTCCAGAACATTTCTATTTCACGCGGTTCTATGTAAGAGCAGTTCTATTYCAGAACAGTTCAATTATAGAGCAGTTCTTTTTCACGCAGTTCTATTTTGGCACAGTTCTATTTTGCTCTTCTATTTTCTATTTCGAGGTAGCGCCATAAAAGGAAATTTATAAATTTGCTTTTATCCGTCTCTATACTTGTCGGTGAGCCGATTCTGGGCCAGCACAATCCGGCTGATAAATTGTTTGCTTCAAAATCGAAATTGTGAGCAGCACAGCATACCAAATGATAGAACTCGAAAAGCTCTACAATTTTCGATAAGAATCAATCCGTTTCAAAAAAGGTATTATAGTCCGGATGGAATTTTTTTTGCCGGGCGAACGATTTATGCCCAACCCGATTGTTAAAAGTCGGTCTGCACTGATTCAACCTTGTTGAAGGCTGTAGAGCTCGCCGAGTTATATCGTCTGGTAAGCTTTTGGCCCACGATTCCAATTTTGAGTTATCAGCGAGATATCAGCTAGACTAGGCTGGCCTGGATCTTTTTTTTCAACAAATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>498 257 178 63 4</canonical_bands>
                <polymorphic_bands>561 257 178 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATTTTCCTTCATAACAGTTC</pcr_primer_p1>
		<pcr_primer_p2>CGACAAGTATAGAGACGGATAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCATTTTCCTTCATAACAGTTCTATTCGAGACCAGTTCTGTTTCAGAACAGTTCTATTCCAGAACATTTCTATTTCACGCGGTTCTATGTAAGAGCAGTTCTATTTCAGAACAGTTCAATTATAGAGCAGTTCTTTTTCACGCAGTTCTATTTTGGCACAGTTCTATTTTGCTCTTCTATTTTCTATTTCGAGGTAGCGCCATAAAAGGAAATTTATAAATTTGCTTTTATCCGTCTCTATACTTGTCG</canonical_amplicon>
		<polymorphic_amplicon>CCATTTTCCTTCATAACAGTTCTATTCGAGACCAGTTCTGTTTCAGAACAGTTCTATTCCAGAACATTTCTATTTCACGCGGTTCTATGTAAGAGCAGTTCTATTYCAGAACAGTTCAATTATAGAGCAGTTCTTTTTCACGCAGTTCTATTTTGGCACAGTTCTATTTTGCTCTTCTATTTTCTATTTCGAGGTAGCGCCATAAAAGGAAATTTATAAATTTGCTTTTATCCGTCTCTATACTTGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34074</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>577716</contig_pos>
        <strand></strand>
        <context>ttaacagttg[A/G]gagGTTACTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGATATCTTTCACATAAACCGAGATACATTGGTTTCAAGTTAACAGTTG</left_flank>
        <right_flank>GAGGTTACTGTAAACTCACAAGTATGCGCACAGCAGAAATCCATGCCACA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGAGTCTAAATCTACGAGAAGGAAAAAGGAATTTAGATCAGTGTCAATCAAACTTTTGATGATGGGCACTCAAGTGTAAATAAGTGTGTTGTCGTCGTTAAAAAGAAATATAATGCGATGATTCTACAAAAATATATTTATTTGAAAAACGGAAAAATGGAGGGAAAAGTTCTTTGGAGTTTGAAAAATAGAAACTAGAGCTCATCATCATCCTCTAATTCAGCTTCTTTAATGTCGGCTTCAATTTCTTGTTGACGTTTCCACTGCTCTATTTTGTCTGCAACACATTCTTTTTTTTTAACTCCTCAAGAAAATTTGATAATCTAGTAGAAGGTCCTCCGAACTTTAAGGCCGAAGATCTCATTTCTTGTTCATGATATCAAAAAAAAAAGTAAACTGAAAAAATGCTTATTACAACATCGAAAATATTTGGTCAGTTTGAAACTTTTTGATATCTTTCACATAAACCGAGATACATTGGTTTCAAGTTAACAGTTGAGAGGTTACTGTAAACTCACAAGTATGCGCACAGCAGAAATCCATGCCACATCTCGAATGCACACACGAATACGGTTTCTGGCATTTGATACCACCCATCGCATCGCAAGTCTGCGGGGTATCATCTGCTTTTCTTAACACCAACCATCCGCCGGGACAGTAATCTTCTGTAAATATTGCGTTAGGATTAGGAAAAAAGAAATAACCAACCTGCTTTACATACACTAGACACTAGATTAACTAGGCATACCAACAAAATGAAAATGATGGAAAGGATGAATCTCATGTTCAGAAGAGAAGGGAATAAGTGTAACCCATGAGAGAGAAGGATTCTTTCGGATAGAGATAGTCATCTAGAATTTGCAAAATGAGGTCAAGTTGAGATTTGAATCTGAAGGAAAGAAAAAAAATTAAAAAGAACCTGTGGACAAATTGGAACATTTATTCTAAAATAAAAAACTGGCAATAAGAGAAAACAGAACTAAAAAGTTGAGAGACACA</canonical>
            <polymorphic>AGGAGTCTAAATCTACGAGAAGGAAAAAGGAATTTAGATCAGTGTCAATCAAACTTTTGATGATGGGCACTCAAGTGTAAATAAGTGTGTTGTCGTCGTTAAAAAGAAATATAATGCGATGATTCTACAAAAATATATTTATTTGAAAAACGGAAAAATGGAGGGAAAAGTTCTTTGGAGTTTGAAAAATAGAAACTAGAGCTCATCATCATCCTCTAATTCAGCTTCTTTAATGTCGGCTTCAATTTCTTGTTGACGTTTCCACTGCTCTATTTTGTCTGCAACACATTCTTTTTTTTTAACTCCTCAAGAAAATTTGATAATCTAGTAGAAGGTCCTCCGAACTTTAAGGCCGAAGATCTCATTTCTTGTTCATGATATCAAAAAAAAAAGTAAACTGAAAAAATGCTTATTACAACATCGAAAATATTTGGTCAGTTTGAAACTTTTTGATATCTTTCACATAAACCGAGATACATTGGTTTCAAGTTAACAGTTGRGAGGTTACTGTAAACTCACAAGTATGCGCACAGCAGAAATCCATGCCACATCTCGAATGCACACACGAATACGGTTTCTGGCATTTGATACCACCCATCGCATCGCAAGTCTGCGGGGTATCATCTGCTTTTCTTAACACCAACCATCCGCCGGGACAGTAATCTTCTGTAAATATTGCGTTAGGATTAGGAAAAAAGAAATAACCAACCTGCTTTACATACACTAGACACTAGATTAACTAGGCATACCAACAAAATGAAAATGATGGAAAGGATGAATCTCATGTTCAGAAGAGAAGGGAATAAGTGTAACCCATGAGAGAGAAGGATTCTTTCGGATAGAGATAGTCATCTAGAATTTGCAAAATGAGGTCAAGTTGAGATTTGAATCTGAAGGAAAGAAAAAAAATTAAAAAGAACCTGTGGACAAATTGGAACATTTATTCTAAAATAAAAAACTGGCAATAAGAGAAAACAGAACTAAAAAGTTGAGAGACACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTCCTCAAGAAAATTTGATAAT</pcr_primer_p1>
		<pcr_primer_p2>AGAAACCGTATTCGTGTGTG</pcr_primer_p2>
		<pcr_amplicon_size>279</pcr_amplicon_size>
		<canonical_amplicon>AACTCCTCAAGAAAATTTGATAATCTAGTAGAAGGTCCTCCGAACTTTAAGGCCGAAGATCTCATTTCTTGTTCATGATATCAAAAAAAAAAGTAAACTGAAAAAATGCTTATTACAACATCGAAAATATTTGGTCAGTTTGAAACTTTTTGATATCTTTCACATAAACCGAGATACATTGGTTTCAAGTTAACAGTTGAGAGGTTACTGTAAACTCACAAGTATGCGCACAGCAGAAATCCATGCCACATCTCGAATGCACACACGAATACGGTTTCT</canonical_amplicon>
		<polymorphic_amplicon>AACTCCTCAAGAAAATTTGATAATCTAGTAGAAGGTCCTCCGAACTTTAAGGCCGAAGATCTCATTTCTTGTTCATGATATCAAAAAAAAAAGTAAACTGAAAAAATGCTTATTACAACATCGAAAATATTTGGTCAGTTTGAAACTTTTTGATATCTTTCACATAAACCGAGATACATTGGTTTCAAGTTAACAGTTGRGAGGTTACTGTAAACTCACAAGTATGCGCACAGCAGAAATCCATGCCACATCTCGAATGCACACACGAATACGGTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34075</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>627028</contig_pos>
        <strand>+</strand>
        <context>TTGGCCTCAT[A/G]TCCAGAATGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGGTCAGAAGCCTTTCCATCTTGGGAATATCCCTTCTCCTTGGCCTCAT</left_flank>
        <right_flank>TCCAGAATGTTCAGCCTTCTGGTGGAAGTTCTTGGCGTGTTGAGACTCGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTCTCCGTACTTGCCCTCGTTGTCGTCGTACTTGGATTTGTGTCCGGCGTCCTCGTTTCCGTAGTCAGAGTGGGAAGCTCCGTGCTTCTCTTGAGCCTTGTCTGGAAACAAAGTAATTTTTAGAATGTTCTAAATTTTTAGAATACTCTAGAACCAATTGCTCTTACCGTATCCTTGGTGTCCATCGGCGTGGTAACCTCCGGCGTCCTTGTGTTGTTGTCCCGCGTTGTGCTCATCTCCAGCGTACTTGTTGGCGTGCTTCTCATCAGTGTGGTATTGCTCCATGTGGTATTGTGGCTGAACGTAACGGTAATCGAAGAATCCGAAAGTCTTGGTCTTCACATCCTTGTTGTAGTTGGAGGCATCATCCACATATTTGTTTCCGGAGCCCGACTGGTGAGCCTCCTTGTTTTGCTTATGCTCGGCGGCGTCCTTGTGAAGGGCATCGTGGTCAGAAGCCTTTCCATCTTGGGAATATCCCTTCTCCTTGGCCTCATATCCAGAATGTTCAGCCTTCTGGTGGAAGTTCTTGGCGTGTTGAGACTCGTCTCCATAGCCGTATTTGCCAGATGCGTTCTCATGGCTGCGATTTTTTAGAATTTTCAATTTATGAAAGTTCAAGAAAATTGTTACTCACCTCGAATGACTAATTGGGCTTGCCAAAATCGAGGCAATGAGAAGAGATGAGCAGATGAGTTGAGAAGTAGTGAACATTGTTGTTCTGGATGCCTTTGACGCCGCCACGCCGGCCTTTTATACTTGTCTCCGAGGTCGTATCTACTGCGATTTGTACTATTATTATTTAGTTTTTTCTCCGACCCATGTCCTTTGTTTTTTGCATTGTATTCTCCATGCAATCTGCTTGCGACGTCTTCAACACAGTCCGGTTTTCCTGTGGCATGTTAACTACGAACATCTATTCTCTTTTTTCCTTGCCCCATTCTTCCTTGACGCGCACCGTTTTTTTCATACTATTTTCTGGCTTCTAGATGCATTGT</canonical>
            <polymorphic>TGGTCTCCGTACTTGCCCTCGTTGTCGTCGTACTTGGATTTGTGTCCGGCGTCCTCGTTTCCGTAGTCAGAGTGGGAAGCTCCGTGCTTCTCTTGAGCCTTGTCTGGAAACAAAGTAATTTTTAGAATGTTCTAAATTTTTAGAATACTCTAGAACCAATTGCTCTTACCGTATCCTTGGTGTCCATCGGCGTGGTAACCTCCGGCGTCCTTGTGTTGTTGTCCCGCGTTGTGCTCATCTCCAGCGTACTTGTTGGCGTGCTTCTCATCAGTGTGGTATTGCTCCATGTGGTATTGTGGCTGAACGTAACGGTAATCGAAGAATCCGAAAGTCTTGGTCTTCACATCCTTGTTGTAGTTGGAGGCATCATCCACATATTTGTTTCCGGAGCCCGACTGGTGAGCCTCCTTGTTTTGCTTATGCTCGGCGGCGTCCTTGTGAAGGGCATCGTGGTCAGAAGCCTTTCCATCTTGGGAATATCCCTTCTCCTTGGCCTCATRTCCAGAATGTTCAGCCTTCTGGTGGAAGTTCTTGGCGTGTTGAGACTCGTCTCCATAGCCGTATTTGCCAGATGCGTTCTCATGGCTGCGATTTTTTAGAATTTTCAATTTATGAAAGTTCAAGAAAATTGTTACTCACCTCGAATGACTAATTGGGCTTGCCAAAATCGAGGCAATGAGAAGAGATGAGCAGATGAGTTGAGAAGTAGTGAACATTGTTGTTCTGGATGCCTTTGACGCCGCCACGCCGGCCTTTTATACTTGTCTCCGAGGTCGTATCTACTGCGATTTGTACTATTATTATTTAGTTTTTTCTCCGACCCATGTCCTTTGTTTTTTGCATTGTATTCTCCATGCAATCTGCTTGCGACGTCTTCAACACAGTCCGGTTTTCCTGTGGCATGTTAACTACGAACATCTATTCTCTTTTTTCCTTGCCCCATTCTTCCTTGACGCGCACCGTTTTTTTCATACTATTTTCTGGCTTCTAGATGCATTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCCTCCTTGTTTTGCTTAT</pcr_primer_p1>
		<pcr_primer_p2>TAGTCATTCGAGGTGAGTAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCCTCCTTGTTTTGCTTATGCTCGGCGGCGTCCTTGTGAAGGGCATCGTGGTCAGAAGCCTTTCCATCTTGGGAATATCCCTTCTCCTTGGCCTCATATCCAGAATGTTCAGCCTTCTGGTGGAAGTTCTTGGCGTGTTGAGACTCGTCTCCATAGCCGTATTTGCCAGATGCGTTCTCATGGCTGCGATTTTTTAGAATTTTCAATTTATGAAAGTTCAAGAAAATTGTTACTCACCTCGAATGACTA</canonical_amplicon>
		<polymorphic_amplicon>AGCCTCCTTGTTTTGCTTATGCTCGGCGGCGTCCTTGTGAAGGGCATCGTGGTCAGAAGCCTTTCCATCTTGGGAATATCCCTTCTCCTTGGCCTCATRTCCAGAATGTTCAGCCTTCTGGTGGAAGTTCTTGGCGTGTTGAGACTCGTCTCCATAGCCGTATTTGCCAGATGCGTTCTCATGGCTGCGATTTTTTAGAATTTTCAATTTATGAAAGTTCAAGAAAATTGTTACTCACCTCGAATGACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34076</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>662644</contig_pos>
        <strand>+</strand>
        <context>GCAAACGACC[C/G]GAAAGATGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGTGCGTGTCACTTGTGACTGTGCAGAGGTTGAGCAGTTGGCAAACGACC</left_flank>
        <right_flank>GAAAGATGGTGAACTATGCCTGAGCAGGATGAAGCCAGAGGAAACTCTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGAAAAGGGAAAGTTGCAAAGGACTTTGAAGAGAGAGTTCAAGAGAACGTGAAATCGCTGGAGTGGAACCGGAGACAGTTGATGTTGCTTGGAGACAAGTTTGGTGGCTGGTCGCTTAGTTGTGATCGTCGCCGGATGTCGTTTCCTATGCTACGCCGACGGCGTTGGTCGCTCGTTCTGGCCCGATAGTGTTGCCCAGCTCGCAAGAGTCGGTGTCTTGTTATCGGTCGTTGGTTCGTGGTGGCTAGCGTTTAGTTACGCTAGTGTGTGTGACGTCGGTGTGAAAGTCGACGACGTTTCCGACCCGTCTTGAAACACGGATTGCGGAGTGCTTGTCTACTGCGAGTCAAAGGGTGTTAAAACCTTGCGGCGAAATGAAAGTGAAGGTCAGTCTTGAATTGGCCGACGTGGGATCGGTGCTCCTCGGAGTGCTGCGCACCACGGCCCTGTGCGTGTCACTTGTGACTGTGCAGAGGTTGAGCAGTTGGCAAACGACCCGAAAGATGGTGAACTATGCCTGAGCAGGATGAAGCCAGAGGAAACTCTGGTGGAAGTCCGTATCGGTTCTGACGTGCAAATCGATCGATAGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGGCTTCACGGCCTTTTTTCGAAGCATTAAGCGGAGCCATTTTATGGCACCGTGACTCTCCTCGAAGACAGTGTCAAGCGGGGAGTTTGACTGGGGCGGTACATCTATCAAATCGTAACGTAGGTGTCCTAAGGCGAGCTCAGAGAGGACGGAAACCTCTCGTAGAGCAAAAGGGCAAAAGCTTGCTTGATCTTGACTTTCAGTACGAGTACAGACCGCGAAAGCGTGGCCTATCGATCCTTTTAATCCTGATTGTTTCAGGTAAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTCCATAGCGACGTTGCTTTTTGATCCTAGGCCAGGAAAAAGAA</canonical>
            <polymorphic>TTGGAAAAGGGAAAGTTGCAAAGGACTTTGAAGAGAGAGTTCAAGAGAACGTGAAATCGCTGGAGTGGAACCGGAGACAGTTGATGTTGCTTGGAGACAAGTTTGGTGGCTGGTCGCTTAGTTGTGATCGTCGCCGGATGTCGTTTCCTATGCTACGCCGACGGCGTTGGTCGCTCGTTCTGGCCCGATAGTGTTGCCCAGCTCGCAAGAGTCGGTGTCTTGTTATCGGTCGTTGGTTCGTGGTGGCTAGCGTTTAGTTACGCTAGTGTGTGTGACGTCGGTGTGAAAGTCGACGACGTTTCCGACCCGTCTTGAAACACGGATTGCGGAGTGCTTGTCTACTGCGAGTCAAAGGGTGTTAAAACCTTGCGGCGAAATGAAAGTGAAGGTCAGTCTTGAATTGGCCGACGTGGGATCGGTGCTCCTCGGAGTGCTGCGCACCACGGCCCTGTGCGTGTCACTTGTGACTGTGCAGAGGTTGAGCAGTTGGCAAACGACCSGAAAGATGGTGAACTATGCCTGAGCAGGATGAAGCCAGAGGAAACTCTGGTGGAAGTCCGTATCGGTTCTGACGTGCAAATCGATCGATAGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCTGGCTTCACGGCCTTTTTTCGAAGCATTAAGCGGAGCCATTTTATGGCACCGTGACTCTCCTCGAAGACAGTGTCAAGCGGGGAGTTTGACTGGGGCGGTACATCTATCAAATCGTAACGTAGGTGTCCTAAGGCGAGCTCAGAGAGGACGGAAACCTCTCGTAGAGCAAAAGGGCAAAAGCTTGCTTGATCTTGACTTTCAGTACGAGTACAGACCGCGAAAGCGTGGCCTATCGATCCTTTTAATCCTGATTGTTTCAGGTAAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTCCATAGCGACGTTGCTTTTTGATCCTAGGCCAGGAAAAAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>505 304 179 12</canonical_bands>
                <polymorphic_bands>684 304 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTGAAGGTCAGTCTTGAATTG</pcr_primer_p1>
		<pcr_primer_p2>ACTAGATGGTTCGATTAGTCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTGAAGGTCAGTCTTGAATTGGCCGACGTGGGATCGGTGCTCCTCGGAGTGCTGCGCACCACGGCCCTGTGCGTGTCACTTGTGACTGTGCAGAGGTTGAGCAGTTGGCAAACGACCCGAAAGATGGTGAACTATGCCTGAGCAGGATGAAGCCAGAGGAAACTCTGGTGGAAGTCCGTATCGGTTCTGACGTGCAAATCGATCGATAGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGT</canonical_amplicon>
		<polymorphic_amplicon>AGTGAAGGTCAGTCTTGAATTGGCCGACGTGGGATCGGTGCTCCTCGGAGTGCTGCGCACCACGGCCCTGTGCGTGTCACTTGTGACTGTGCAGAGGTTGAGCAGTTGGCAAACGACCSGAAAGATGGTGAACTATGCCTGAGCAGGATGAAGCCAGAGGAAACTCTGGTGGAAGTCCGTATCGGTTCTGACGTGCAAATCGATCGATAGACTTGGGTATAGGGGCGAAAGACTAATCGAACCATCTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34077</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>668008</contig_pos>
        <strand></strand>
        <context>tgtatgctag[G/A]aatcaatgta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAAATTTTTTTGGCCCTTCCGCATGTACCACAAAATCCCATGTATGCTAG</left_flank>
        <right_flank>AATCAATGTACTCTAAGAAGTAGATGTACTCTTTCCCGATGTACCCTTGG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTTTGGATTTTGAAAAAATTTTGGATTTTAAAGAAAATTTAGGATTTTAAAGATCTTGAAAAACATTAAATTCCAAAAATTTCGTGCGATGAAATTTTCATCATAAATTGTGGCCAGTGTTCCTCCTGGCTGTACTTAGCTGTAATTAGCTTTTGAAAAACTGGTTTGTCGTTGTTTTCATACATTATCAGAGTTTTCGAATTATTGGATTTTGAAGATAGTGCAAAAATTTCAAGACTAGAGACAAGCTTGAAAGGGTCCCGAAGGTTAATATTTATTGCCCTCATCTTGTCGGGAACCCAGGATCAAAGGGTACATTAAAAAAGGGTACGTTGAGGGTACTCTGAGTTCTTAGGGTATATAGGTTCAAAGGGTAAATGGGATCTTGGGTGTAGGTCGTTTTAGCTTGAGCCAATGATTTAGAGCAAAAGCTAAATAGTCAGTAGGAAATTTTTTTGGCCCTTCCGCATGTACCACAAAATCCCATGTATGCTAGGAATCAATGTACTCTAAGAAGTAGATGTACTCTTTCCCGATGTACCCTTGGATACTGGGCCGTTGAAAATATGGCATATACAGCCAAATGTTTTAAAGTTGATGTCAAATGCCAGTGTTCCAGTGGAAGGAAAACAGCACGTTTCAGCCTAAGCCTTTAAATTCAACGAAAAAACAGAAAATTTGAAAAAAAATTTAGTGAAAAAAAAGAGATTTTCATTGATTTGAATTTCAGTACTTCATTAACTGAATTTTTCAGAGTACTTTGTCTGATGTTTGAAATTATAGGCTTAGACTGAAAAGCTTCGTTATCTCTGTACTGAGGAATTCGAAAATGACACCAAATTCAAAAGAGTTGGAAGCTAAAAAACTATACCTTATTTAGCACCCAGATCAAATTAATTCTCAAGCAAACAAATAACAATCAATCTTTGAAGGGCCAACGTCTGACGGTCGCCAACGTACGAAGGCGGTTTTATGCCAAAAATCGAGTAGTTGAAAA</canonical>
            <polymorphic>TATTTTTGGATTTTGAAAAAATTTTGGATTTTAAAGAAAATTTAGGATTTTAAAGATCTTGAAAAACATTAAATTCCAAAAATTTCGTGCGATGAAATTTTCATCATAAATTGTGGCCAGTGTTCCTCCTGGCTGTACTTAGCTGTAATTAGCTTTTGAAAAACTGGTTTGTCGTTGTTTTCATACATTATCAGAGTTTTCGAATTATTGGATTTTGAAGATAGTGCAAAAATTTCAAGACTAGAGACAAGCTTGAAAGGGTCCCGAAGGTTAATATTTATTGCCCTCATCTTGTCGGGAACCCAGGATCAAAGGGTACATTAAAAAAGGGTACGTTGAGGGTACTCTGAGTTCTTAGGGTATATAGGTTCAAAGGGTAAATGGGATCTTGGGTGTAGGTCGTTTTAGCTTGAGCCAATGATTTAGAGCAAAAGCTAAATAGTCAGTAGGAAATTTTTTTGGCCCTTCCGCATGTACCACAAAATCCCATGTATGCTAGRAATCAATGTACTCTAAGAAGTAGATGTACTCTTTCCCGATGTACCCTTGGATACTGGGCCGTTGAAAATATGGCATATACAGCCAAATGTTTTAAAGTTGATGTCAAATGCCAGTGTTCCAGTGGAAGGAAAACAGCACGTTTCAGCCTAAGCCTTTAAATTCAACGAAAAAACAGAAAATTTGAAAAAAAATTTAGTGAAAAAAAAGAGATTTTCATTGATTTGAATTTCAGTACTTCATTAACTGAATTTTTCAGAGTACTTTGTCTGATGTTTGAAATTATAGGCTTAGACTGAAAAGCTTCGTTATCTCTGTACTGAGGAATTCGAAAATGACACCAAATTCAAAAGAGTTGGAAGCTAAAAAACTATACCTTATTTAGCACCCAGATCAAATTAATTCTCAAGCAAACAAATAACAATCAATCTTTGAAGGGCCAACGTCTGACGGTCGCCAACGTACGAAGGCGGTTTTATGCCAAAAATCGAGTAGTTGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATACATTATCAGAGTTTTCGAATTA</pcr_primer_p1>
		<pcr_primer_p2>GATTTTAAAGAAGTTTTTGGATTT</pcr_primer_p2>
		<pcr_amplicon_size>959</pcr_amplicon_size>
		<canonical_amplicon>CATACATTATCAGAGTTTTCGAATTATTGGATTTTGAAGATAGTGCAAAAATTTCAAGACTAGAGACAAGCTTGAAAGGGTCCCGAAGGTTAATATTTATTGCCCTCATCTTGTCGGGAACCCAGGATCAAAGGGTACATTAAAAAAGGGTACGTTGAGGGTACTCTGAGTTCTTAGGGTATATAGGTTCAAAGGGTAAATGGGATCTTGGGTGTAGGTCGTTTTAGCTTGAGCCAATGATTTAGAGCAAAAGCTAAATAGTCAGTAGGAAATTTTTTTGGCCCTTCCGCATGTACCACAAAATCCCATGTATGCTAGGAATCAATGTACTCTAAGAAGTAG</canonical_amplicon>
		<polymorphic_amplicon>CATACATTATCAGAGTTTTCGAATTATTGGATTTTGAAGATAGTGCAAAAATTTCAAGACTAGAGACAAGCTTGAAAGGGTCCCGAAGGTTAATATTTATTGCCCTCATCTTGTCGGGAACCCAGGATCAAAGGGTACATTAAAAAAGGGTACGTTGAGGGTACTCTGAGTTCTTAGGGTATATAGGTTCAAAGGGTAAATGGGATCTTGGGTGTAGGTCGTTTTAGCTTGAGCCAATGATTTAGAGCAAAAGCTAAATAGTCAGTAGGAAATTTTTTTGGCCCTTCCGCATGTACCACAAAATCCCATGTATGCTAGRAATCAATGTACTCTAAGAAGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34078</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>668155</contig_pos>
        <strand></strand>
        <context>cacgtttcag[C/T]ctaagcyttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTGATGTCAAATGCCAGTGTTCCAGTGGAAGGAAAACAGCACGTTTCAG</left_flank>
        <right_flank>CTAAGCCTTTAAATTCAACGAAAAAACAGAAAATTTGAAAAAAAATTTAG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTAGCTTTTGAAAAACTGGTTTGTCGTTGTTTTCATACATTATCAGAGTTTTCGAATTATTGGATTTTGAAGATAGTGCAAAAATTTCAAGACTAGAGACAAGCTTGAAAGGGTCCCGAAGGTTAATATTTATTGCCCTCATCTTGTCGGGAACCCAGGATCAAAGGGTACATTAAAAAAGGGTACGTTGAGGGTACTCTGAGTTCTTAGGGTATATAGGTTCAAAGGGTAAATGGGATCTTGGGTGTAGGTCGTTTTAGCTTGAGCCAATGATTTAGAGCAAAAGCTAAATAGTCAGTAGGAAATTTTTTTGGCCCTTCCGCATGTACCACAAAATCCCATGTATGCTAGGAATCAATGTACTCTAAGAAGTAGATGTACTCTTTCCCGATGTACCCTTGGATACTGGGCCGTTGAAAATATGGCATATACAGCCAAATGTTTTAAAGTTGATGTCAAATGCCAGTGTTCCAGTGGAAGGAAAACAGCACGTTTCAGCCTAAGCCTTTAAATTCAACGAAAAAACAGAAAATTTGAAAAAAAATTTAGTGAAAAAAAAGAGATTTTCATTGATTTGAATTTCAGTACTTCATTAACTGAATTTTTCAGAGTACTTTGTCTGATGTTTGAAATTATAGGCTTAGACTGAAAAGCTTCGTTATCTCTGTACTGAGGAATTCGAAAATGACACCAAATTCAAAAGAGTTGGAAGCTAAAAAACTATACCTTATTTAGCACCCAGATCAAATTAATTCTCAAGCAAACAAATAACAATCAATCTTTGAAGGGCCAACGTCTGACGGTCGCCAACGTACGAAGGCGGTTTTATGCCAAAAATCGAGTAGTTGAAAAGCAAGAGGTATTATTATGAATCTTTTCTGAATTCTTTAAAATCCAAAATTTTCCTGATTAAAATCCAAAAATTTCTTTAAAGTCCAAAATTTTTTTTAATTCCAAAATTTTTATTAAAATCCAAAAACTTCTTTAAAATCCAAAATA</canonical>
            <polymorphic>ATTAGCTTTTGAAAAACTGGTTTGTCGTTGTTTTCATACATTATCAGAGTTTTCGAATTATTGGATTTTGAAGATAGTGCAAAAATTTCAAGACTAGAGACAAGCTTGAAAGGGTCCCGAAGGTTAATATTTATTGCCCTCATCTTGTCGGGAACCCAGGATCAAAGGGTACATTAAAAAAGGGTACGTTGAGGGTACTCTGAGTTCTTAGGGTATATAGGTTCAAAGGGTAAATGGGATCTTGGGTGTAGGTCGTTTTAGCTTGAGCCAATGATTTAGAGCAAAAGCTAAATAGTCAGTAGGAAATTTTTTTGGCCCTTCCGCATGTACCACAAAATCCCATGTATGCTAGGAATCAATGTACTCTAAGAAGTAGATGTACTCTTTCCCGATGTACCCTTGGATACTGGGCCGTTGAAAATATGGCATATACAGCCAAATGTTTTAAAGTTGATGTCAAATGCCAGTGTTCCAGTGGAAGGAAAACAGCACGTTTCAGYCTAAGCCTTTAAATTCAACGAAAAAACAGAAAATTTGAAAAAAAATTTAGTGAAAAAAAAGAGATTTTCATTGATTTGAATTTCAGTACTTCATTAACTGAATTTTTCAGAGTACTTTGTCTGATGTTTGAAATTATAGGCTTAGACTGAAAAGCTTCGTTATCTCTGTACTGAGGAATTCGAAAATGACACCAAATTCAAAAGAGTTGGAAGCTAAAAAACTATACCTTATTTAGCACCCAGATCAAATTAATTCTCAAGCAAACAAATAACAATCAATCTTTGAAGGGCCAACGTCTGACGGTCGCCAACGTACGAAGGCGGTTTTATGCCAAAAATCGAGTAGTTGAAAAGCAAGAGGTATTATTATGAATCTTTTCTGAATTCTTTAAAATCCAAAATTTTCCTGATTAAAATCCAAAAATTTCTTTAAAGTCCAAAATTTTTTTTAATTCCAAAATTTTTATTAAAATCCAAAAACTTCTTTAAAATCCAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>210 157 135 99 96 77 64 59 28 24 20 14 6 6 5</canonical_bands>
                <polymorphic_bands>210 157 135 99 96 77 70 59 28 24 20 14 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATACATTATCAGAGTTTTCGAATTA</pcr_primer_p1>
		<pcr_primer_p2>GATTTTAAAGAAGTTTTTGGATTT</pcr_primer_p2>
		<pcr_amplicon_size>959</pcr_amplicon_size>
		<canonical_amplicon>CATACATTATCAGAGTTTTCGAATTATTGGATTTTGAAGATAGTGCAAAAATTTCAAGACTAGAGACAAGCTTGAAAGGGTCCCGAAGGTTAATATTTATTGCCCTCATCTTGTCGGGAACCCAGGATCAAAGGGTACATTAAAAAAGGGTACGTTGAGGGTACTCTGAGTTCTTAGGGTATATAGGTTCAAAGGGTAAATGGGATCTTGGGTGTAGGTCGTTTTAGCTTGAGCCAATGATTTAGAGCAAAAGCTAAATAGTCAGTAGGAAATTTTTTTGGCCCTTCCGCATGTACCACAAAATCCCATGTATGCTAGGAATCAATGTACTCTAAGAAGTAGATGTACTCTTTCCCGATGTACCCTTGGATACTGGGCCGTTGAAAATATGGCATATACAGCCAAATGTTTTAAAGTTGATGTCAAATGCCAGTGTTCCAGTGGAAGGAAAACAGCACGTTTCAGCCTAAGCCTTTAAATTCAACGAAAAAACAGAAAATTTGAAAAAAAATTTAGTGAAAAAAAAGAGATTTTCATTGATTTGAATTTCAGTACTTCATTAACTGAATTTTTCAGAGTACTTTGTCTGATGTTTGAAATTATAGGCTTAGACTGAAAAGCTTCGTTATCTCTGTACTGAGGAATTCGAAAATGACACCAAATTCAAAAGAGTTGGAAGCTAAAAAACTATACCTTATTTAGCACCCAGATCAAATTAATTCTCAAGCAAACAAATAACAATCAATCTTTGAAGGGCCAACGTCTGACGGTCGCCAACGTACGAAGGCGGTTTTATGCCAAAAATCGAGTAGTTGAAAAGCAAGAGGTATTATTATGAATCTTTTCTGAATTCTTTAAAATCCAAAATTTTCCTGATTAAAATCCAAAAATTTCTTTAAAGTCCAAAATTTTTTTTAATTCCAAAATTTTTATTAAAATCCAAAAACTTCTTTAAAATC</canonical_amplicon>
		<polymorphic_amplicon>CATACATTATCAGAGTTTTCGAATTATTGGATTTTGAAGATAGTGCAAAAATTTCAAGACTAGAGACAAGCTTGAAAGGGTCCCGAAGGTTAATATTTATTGCCCTCATCTTGTCGGGAACCCAGGATCAAAGGGTACATTAAAAAAGGGTACGTTGAGGGTACTCTGAGTTCTTAGGGTATATAGGTTCAAAGGGTAAATGGGATCTTGGGTGTAGGTCGTTTTAGCTTGAGCCAATGATTTAGAGCAAAAGCTAAATAGTCAGTAGGAAATTTTTTTGGCCCTTCCGCATGTACCACAAAATCCCATGTATGCTAGGAATCAATGTACTCTAAGAAGTAGATGTACTCTTTCCCGATGTACCCTTGGATACTGGGCCGTTGAAAATATGGCATATACAGCCAAATGTTTTAAAGTTGATGTCAAATGCCAGTGTTCCAGTGGAAGGAAAACAGCACGTTTCAGYCTAAGCCTTTAAATTCAACGAAAAAACAGAAAATTTGAAAAAAAATTTAGTGAAAAAAAAGAGATTTTCATTGATTTGAATTTCAGTACTTCATTAACTGAATTTTTCAGAGTACTTTGTCTGATGTTTGAAATTATAGGCTTAGACTGAAAAGCTTCGTTATCTCTGTACTGAGGAATTCGAAAATGACACCAAATTCAAAAGAGTTGGAAGCTAAAAAACTATACCTTATTTAGCACCCAGATCAAATTAATTCTCAAGCAAACAAATAACAATCAATCTTTGAAGGGCCAACGTCTGACGGTCGCCAACGTACGAAGGCGGTTTTATGCCAAAAATCGAGTAGTTGAAAAGCAAGAGGTATTATTATGAATCTTTTCTGAATTCTTTAAAATCCAAAATTTTCCTGATTAAAATCCAAAAATTTCTTTAAAGTCCAAAATTTTTTTTAATTCCAAAATTTTTATTAAAATCCAAAAACTTCTTTAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34079</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>668162</contig_pos>
        <strand></strand>
        <context>cagyctaagc[C/T]tttaaattca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAAATGCCAGTGTTCCAGTGGAAGGAAAACAGCACGTTTCAGCCTAAGC</left_flank>
        <right_flank>TTTAAATTCAACGAAAAAACAGAAAATTTGAAAAAAAATTTAGTGAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAAAAACTGGTTTGTCGTTGTTTTCATACATTATCAGAGTTTTCGAATTATTGGATTTTGAAGATAGTGCAAAAATTTCAAGACTAGAGACAAGCTTGAAAGGGTCCCGAAGGTTAATATTTATTGCCCTCATCTTGTCGGGAACCCAGGATCAAAGGGTACATTAAAAAAGGGTACGTTGAGGGTACTCTGAGTTCTTAGGGTATATAGGTTCAAAGGGTAAATGGGATCTTGGGTGTAGGTCGTTTTAGCTTGAGCCAATGATTTAGAGCAAAAGCTAAATAGTCAGTAGGAAATTTTTTTGGCCCTTCCGCATGTACCACAAAATCCCATGTATGCTAGGAATCAATGTACTCTAAGAAGTAGATGTACTCTTTCCCGATGTACCCTTGGATACTGGGCCGTTGAAAATATGGCATATACAGCCAAATGTTTTAAAGTTGATGTCAAATGCCAGTGTTCCAGTGGAAGGAAAACAGCACGTTTCAGCCTAAGCCTTTAAATTCAACGAAAAAACAGAAAATTTGAAAAAAAATTTAGTGAAAAAAAAGAGATTTTCATTGATTTGAATTTCAGTACTTCATTAACTGAATTTTTCAGAGTACTTTGTCTGATGTTTGAAATTATAGGCTTAGACTGAAAAGCTTCGTTATCTCTGTACTGAGGAATTCGAAAATGACACCAAATTCAAAAGAGTTGGAAGCTAAAAAACTATACCTTATTTAGCACCCAGATCAAATTAATTCTCAAGCAAACAAATAACAATCAATCTTTGAAGGGCCAACGTCTGACGGTCGCCAACGTACGAAGGCGGTTTTATGCCAAAAATCGAGTAGTTGAAAAGCAAGAGGTATTATTATGAATCTTTTCTGAATTCTTTAAAATCCAAAATTTTCCTGATTAAAATCCAAAAATTTCTTTAAAGTCCAAAATTTTTTTTAATTCCAAAATTTTTATTAAAATCCAAAAACTTCTTTAAAATCCAAAATAACCAACT</canonical>
            <polymorphic>TTTGAAAAACTGGTTTGTCGTTGTTTTCATACATTATCAGAGTTTTCGAATTATTGGATTTTGAAGATAGTGCAAAAATTTCAAGACTAGAGACAAGCTTGAAAGGGTCCCGAAGGTTAATATTTATTGCCCTCATCTTGTCGGGAACCCAGGATCAAAGGGTACATTAAAAAAGGGTACGTTGAGGGTACTCTGAGTTCTTAGGGTATATAGGTTCAAAGGGTAAATGGGATCTTGGGTGTAGGTCGTTTTAGCTTGAGCCAATGATTTAGAGCAAAAGCTAAATAGTCAGTAGGAAATTTTTTTGGCCCTTCCGCATGTACCACAAAATCCCATGTATGCTAGGAATCAATGTACTCTAAGAAGTAGATGTACTCTTTCCCGATGTACCCTTGGATACTGGGCCGTTGAAAATATGGCATATACAGCCAAATGTTTTAAAGTTGATGTCAAATGCCAGTGTTCCAGTGGAAGGAAAACAGCACGTTTCAGCCTAAGCYTTTAAATTCAACGAAAAAACAGAAAATTTGAAAAAAAATTTAGTGAAAAAAAAGAGATTTTCATTGATTTGAATTTCAGTACTTCATTAACTGAATTTTTCAGAGTACTTTGTCTGATGTTTGAAATTATAGGCTTAGACTGAAAAGCTTCGTTATCTCTGTACTGAGGAATTCGAAAATGACACCAAATTCAAAAGAGTTGGAAGCTAAAAAACTATACCTTATTTAGCACCCAGATCAAATTAATTCTCAAGCAAACAAATAACAATCAATCTTTGAAGGGCCAACGTCTGACGGTCGCCAACGTACGAAGGCGGTTTTATGCCAAAAATCGAGTAGTTGAAAAGCAAGAGGTATTATTATGAATCTTTTCTGAATTCTTTAAAATCCAAAATTTTCCTGATTAAAATCCAAAAATTTCTTTAAAGTCCAAAATTTTTTTTAATTCCAAAATTTTTATTAAAATCCAAAAACTTCTTTAAAATCCAAAATAACCAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>217 157 135 97 96 77 64 59 28 24 20 14 6 6</canonical_bands>
                <polymorphic_bands>217 157 141 97 96 77 64 59 28 24 20 14 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATACATTATCAGAGTTTTCGAATTA</pcr_primer_p1>
		<pcr_primer_p2>GATTTTAAAGAAGTTTTTGGATTT</pcr_primer_p2>
		<pcr_amplicon_size>959</pcr_amplicon_size>
		<canonical_amplicon>CATACATTATCAGAGTTTTCGAATTATTGGATTTTGAAGATAGTGCAAAAATTTCAAGACTAGAGACAAGCTTGAAAGGGTCCCGAAGGTTAATATTTATTGCCCTCATCTTGTCGGGAACCCAGGATCAAAGGGTACATTAAAAAAGGGTACGTTGAGGGTACTCTGAGTTCTTAGGGTATATAGGTTCAAAGGGTAAATGGGATCTTGGGTGTAGGTCGTTTTAGCTTGAGCCAATGATTTAGAGCAAAAGCTAAATAGTCAGTAGGAAATTTTTTTGGCCCTTCCGCATGTACCACAAAATCCCATGTATGCTAGGAATCAATGTACTCTAAGAAGTAGATGTACTCTTTCCCGATGTACCCTTGGATACTGGGCCGTTGAAAATATGGCATATACAGCCAAATGTTTTAAAGTTGATGTCAAATGCCAGTGTTCCAGTGGAAGGAAAACAGCACGTTTCAGCCTAAGCCTTTAAATTCAACGAAAAAACAGAAAATTTGAAAAAAAATTTAGTGAAAAAAAAGAGATTTTCATTGATTTGAATTTCAGTACTTCATTAACTGAATTTTTCAGAGTACTTTGTCTGATGTTTGAAATTATAGGCTTAGACTGAAAAGCTTCGTTATCTCTGTACTGAGGAATTCGAAAATGACACCAAATTCAAAAGAGTTGGAAGCTAAAAAACTATACCTTATTTAGCACCCAGATCAAATTAATTCTCAAGCAAACAAATAACAATCAATCTTTGAAGGGCCAACGTCTGACGGTCGCCAACGTACGAAGGCGGTTTTATGCCAAAAATCGAGTAGTTGAAAAGCAAGAGGTATTATTATGAATCTTTTCTGAATTCTTTAAAATCCAAAATTTTCCTGATTAAAATCCAAAAATTTCTTTAAAGTCCAAAATTTTTTTTAATTCCAAAATTTTTATTAAAATCCAAAAACTTCTTTAAAATC</canonical_amplicon>
		<polymorphic_amplicon>CATACATTATCAGAGTTTTCGAATTATTGGATTTTGAAGATAGTGCAAAAATTTCAAGACTAGAGACAAGCTTGAAAGGGTCCCGAAGGTTAATATTTATTGCCCTCATCTTGTCGGGAACCCAGGATCAAAGGGTACATTAAAAAAGGGTACGTTGAGGGTACTCTGAGTTCTTAGGGTATATAGGTTCAAAGGGTAAATGGGATCTTGGGTGTAGGTCGTTTTAGCTTGAGCCAATGATTTAGAGCAAAAGCTAAATAGTCAGTAGGAAATTTTTTTGGCCCTTCCGCATGTACCACAAAATCCCATGTATGCTAGGAATCAATGTACTCTAAGAAGTAGATGTACTCTTTCCCGATGTACCCTTGGATACTGGGCCGTTGAAAATATGGCATATACAGCCAAATGTTTTAAAGTTGATGTCAAATGCCAGTGTTCCAGTGGAAGGAAAACAGCACGTTTCAGCCTAAGCYTTTAAATTCAACGAAAAAACAGAAAATTTGAAAAAAAATTTAGTGAAAAAAAAGAGATTTTCATTGATTTGAATTTCAGTACTTCATTAACTGAATTTTTCAGAGTACTTTGTCTGATGTTTGAAATTATAGGCTTAGACTGAAAAGCTTCGTTATCTCTGTACTGAGGAATTCGAAAATGACACCAAATTCAAAAGAGTTGGAAGCTAAAAAACTATACCTTATTTAGCACCCAGATCAAATTAATTCTCAAGCAAACAAATAACAATCAATCTTTGAAGGGCCAACGTCTGACGGTCGCCAACGTACGAAGGCGGTTTTATGCCAAAAATCGAGTAGTTGAAAAGCAAGAGGTATTATTATGAATCTTTTCTGAATTCTTTAAAATCCAAAATTTTCCTGATTAAAATCCAAAAATTTCTTTAAAGTCCAAAATTTTTTTTAATTCCAAAATTTTTATTAAAATCCAAAAACTTCTTTAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34080</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>708040</contig_pos>
        <strand>+</strand>
        <context>ATCTGTTACA[C/T]TTGAGCAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGCTCCTTTCATCAATGCTCACCTAATATTGGGAAATGTATCTGTTACA</left_flank>
        <right_flank>TTGAGCAAAATCGCATAACTATGGAGAAATGCGAGTGAATTTGGCTTGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTGACGAGCTGACCGAAACGGTGGGAGTGGCTTTTTCATCGAAAATTTACATATCGAAGATAACGATGGAGATAGCATTGGCCAAGTGTTGACAATGATTGATGTGAACACTATCACCTCTCTCAGAATCAATTGTGATGGTGCCCATCTGCATGACGAAGAACAGTTTCTCGATTCACCACAATGGGAAAGAGTACGAGATTTTCGACTCATCGGTGGCGTGGAACTCCCAGATCACATCCTCAACGCCCTTAGAAATGTATCATTTTTCAACATTGATCAGGATGACGATAACATGGAAATTACTTTCAAAAGAATTTTTATGTTCATTTTGTCAGTGAGTGGATTTTAGAATAATTTGCATTTCATAATCAAATTTTTTTCAGGTTCTCAATCGATCTGATAACTTCGAAAAAGGACAAATAACTTCTAGAAACTTATATATTCCTGCTCCTTTCATCAATGCTCACCTAATATTGGGAAATGTATCTGTTACACTTGAGCAAAATCGCATAACTATGGAGAAATGCGAGTGAATTTGGCTTGCCTTTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAAGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAAACAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGTCGTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATTGCGACCATTGCACAAATTCCAGTTGGCCAGAAATCAAAAATAGTGAACAGTGATTACATGGAAATTGAGAATAAAGGCCTTGGTACTTATCTAAAAAACCCCAATACAAAGATAAAAAATCTGAAGCTACAATGGAAATTTTCTGGGTATCTTTTTGATATACTCTTGCAAATCTTGACAACTTTTTTCGACGAGCTCACCC</canonical>
            <polymorphic>CTTTGACGAGCTGACCGAAACGGTGGGAGTGGCTTTTTCATCGAAAATTTACATATCGAAGATAACGATGGAGATAGCATTGGCCAAGTGTTGACAATGATTGATGTGAACACTATCACCTCTCTCAGAATCAATTGTGATGGTGCCCATCTGCATGACGAAGAACAGTTTCTCGATTCACCACAATGGGAAAGAGTACGAGATTTTCGACTCATCGGTGGCGTGGAACTCCCAGATCACATCCTCAACGCCCTTAGAAATGTATCATTTTTCAACATTGATCAGGATGACGATAACATGGAAATTACTTTCAAAAGAATTTTTATGTTCATTTTGTCAGTGAGTGGATTTTAGAATAATTTGCATTTCATAATCAAATTTTTTTCAGGTTCTCAATCGATCTGATAACTTCGAAAAAGGACAAATAACTTCTAGAAACTTATATATTCCTGCTCCTTTCATCAATGCTCACCTAATATTGGGAAATGTATCTGTTACAYTTGAGCAAAATCGCATAACTATGGAGAAATGCGAGTGAATTTGGCTTGCCTTTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAAGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAAACAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGTCGTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATTGCGACCATTGCACAAATTCCAGTTGGCCAGAAATCAAAAATAGTGAACAGTGATTACATGGAAATTGAGAATAAAGGCCTTGGTACTTATCTAAAAAACCCCAATACAAAGATAAAAAATCTGAAGCTACAATGGAAATTTTCTGGGTATCTTTTTGATATACTCTTGCAAATCTTGACAACTTTTTTCGACGAGCTCACCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>180 147 125 103 93 59 38 37 35 33 28 25 21 18 14 7 6 6 6 5 4 4 3 3</canonical_bands>
                <polymorphic_bands>180 147 125 103 93 66 59 37 35 33 25 21 18 14 7 6 6 6 5 4 4 3 3</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTATATATTCCTGCTCCTTTCA</pcr_primer_p1>
		<pcr_primer_p2>GTATGTCGTTTTCGATTATCTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTATATATTCCTGCTCCTTTCATCAATGCTCACCTAATATTGGGAAATGTATCTGTTACACTTGAGCAAAATCGCATAACTATGGAGAAATGCGAGTGAATTTGGCTTGCCTTTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAAGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAAACAACCCAGAACAGATAATCGAAAACGACATAC</canonical_amplicon>
		<polymorphic_amplicon>CTTATATATTCCTGCTCCTTTCATCAATGCTCACCTAATATTGGGAAATGTATCTGTTACAYTTGAGCAAAATCGCATAACTATGGAGAAATGCGAGTGAATTTGGCTTGCCTTTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAAGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAAACAACCCAGAACAGATAATCGAAAACGACATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34081</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>708190</contig_pos>
        <strand>+</strand>
        <context>GAAAAGAGGT[A/C]AAMAARMAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGT</left_flank>
        <right_flank>AAAAAACAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGCATGACGAAGAACAGTTTCTCGATTCACCACAATGGGAAAGAGTACGAGATTTTCGACTCATCGGTGGCGTGGAACTCCCAGATCACATCCTCAACGCCCTTAGAAATGTATCATTTTTCAACATTGATCAGGATGACGATAACATGGAAATTACTTTCAAAAGAATTTTTATGTTCATTTTGTCAGTGAGTGGATTTTAGAATAATTTGCATTTCATAATCAAATTTTTTTCAGGTTCTCAATCGATCTGATAACTTCGAAAAAGGACAAATAACTTCTAGAAACTTATATATTCCTGCTCCTTTCATCAATGCTCACCTAATATTGGGAAATGTATCTGTTACACTTGAGCAAAATCGCATAACTATGGAGAAATGCGAGTGAATTTGGCTTGCCTTTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAAGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAAACAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGTCGTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATTGCGACCATTGCACAAATTCCAGTTGGCCAGAAATCAAAAATAGTGAACAGTGATTACATGGAAATTGAGAATAAAGGCCTTGGTACTTATCTAAAAAACCCCAATACAAAGATAAAAAATCTGAAGCTACAATGGAAATTTTCTGGGTATCTTTTTGATATACTCTTGCAAATCTTGACAACTTTTTTCGACGAGCTCACCCAAAACGGAAGGAGTGGCTTTTGCGTCGAAACTCTAGAACTCGTAGAAAACGCTGGAAATAACATTGCTCAAGTGTTGAGGTTGATTGATGTGAACACTATCAAATCGATTGTGATCAATTCCCTGTGCACGATAAAGAAGGATTTCTCAA</canonical>
            <polymorphic>CTGCATGACGAAGAACAGTTTCTCGATTCACCACAATGGGAAAGAGTACGAGATTTTCGACTCATCGGTGGCGTGGAACTCCCAGATCACATCCTCAACGCCCTTAGAAATGTATCATTTTTCAACATTGATCAGGATGACGATAACATGGAAATTACTTTCAAAAGAATTTTTATGTTCATTTTGTCAGTGAGTGGATTTTAGAATAATTTGCATTTCATAATCAAATTTTTTTCAGGTTCTCAATCGATCTGATAACTTCGAAAAAGGACAAATAACTTCTAGAAACTTATATATTCCTGCTCCTTTCATCAATGCTCACCTAATATTGGGAAATGTATCTGTTACACTTGAGCAAAATCGCATAACTATGGAGAAATGCGAGTGAATTTGGCTTGCCTTTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAAGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTMAAAAAACAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGTCGTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATTGCGACCATTGCACAAATTCCAGTTGGCCAGAAATCAAAAATAGTGAACAGTGATTACATGGAAATTGAGAATAAAGGCCTTGGTACTTATCTAAAAAACCCCAATACAAAGATAAAAAATCTGAAGCTACAATGGAAATTTTCTGGGTATCTTTTTGATATACTCTTGCAAATCTTGACAACTTTTTTCGACGAGCTCACCCAAAACGGAAGGAGTGGCTTTTGCGTCGAAACTCTAGAACTCGTAGAAAACGCTGGAAATAACATTGCTCAAGTGTTGAGGTTGATTGATGTGAACACTATCAAATCGATTGTGATCAATTCCCTGTGCACGATAAAGAAGGATTTCTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTAATCATAACGCCTCATT</pcr_primer_p1>
		<pcr_primer_p2>AATTTTATGGTTCTGAAAGGTCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAAGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTAAAAAAACAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGTCGTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATT</canonical_amplicon>
		<polymorphic_amplicon>TTCTTAATCATAACGCCTCATTTCATTTTTATTGTTTTATTCTGAAAAAGATTATTGATTGAATATTCAACTCAACCCACTTTTCAAAGAAAAGAGGTMAAAAAACAACCCAGAACAGATAATCGAAAACGACATACAATTTATTTTCATCTTCGTCGTTCTCTCCAAAAAGTAAGGTTCCTGCCTCTACGTCTTCCGAAGCTTGACGACTTTTGTATTTGATGAGACCTTTCAGAACCATAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34082</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>710343</contig_pos>
        <strand>+</strand>
        <context>CCCAAAGAAC[A/G]TGTTGAATGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAGAAACATCAAAATCCAGCCACGCTCCTAGTTTGTCATCCCAAAGAAC</left_flank>
        <right_flank>TGTTGAATGGCTGCACTAATTTTTTCCAATTTTCGTCTATAGGAAGTCGC</right_flank>
        <qual_score>146</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAAGGAACCGAGATAATCGCGCTCAAAGTACACATAGTTGTATCAGAGCAAATGTTGTTAGGACATCTAAGGCAATTAGAAAACAAATGAAATCCCAACAAATGATCACAGAATCTTTGAAAATAATAATAAATCCATTTTTTTCAAAATTACCTGTTGAAGGAAACTATTACTTGTCGCTAGAAAACTTTGAATGACAAAGTGTTGATTTGGTGCCCAGACATTTGGAAAATCCCATTGTTGATTCAACGACTCCGAAGGTAGAGAAGACGGAATCCCACCAGCAAACTTCAATGCTCCAGATTTTTTCATGTAGTTTTCCACCTTATCTGCGTATTTTTCAAAACCCGGAATCATTAGTGGATAGACATTGGATGGGTAGAAATTGGAACTGAATTAAAAATGTGATTATTGTAGTTAAGTGCAAAAACTCACTTTTTCTTCTTCAGAGAAACATCAAAATCCAGCCACGCTCCTAGTTTGTCATCCCAAAGAACATGTTGAATGGCTGCACTAATTTTTTCCAATTTTCGTCTATAGGAAGTCGCTTCACTGAAATTTTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCATAAGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTATCACCTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATCCACTTTCACAGGCAGAAGAAATTCCTCTCCATACATCAGACGGCATCGTTGTATTCATACCAATCGAGTAGTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTG</canonical>
            <polymorphic>TTGAAGGAACCGAGATAATCGCGCTCAAAGTACACATAGTTGTATCAGAGCAAATGTTGTTAGGACATCTAAGGCAATTAGAAAACAAATGAAATCCCAACAAATGATCACAGAATCTTTGAAAATAATAATAAATCCATTTTTTTCAAAATTACCTGTTGAAGGAAACTATTACTTGTCGCTAGAAAACTTTGAATGACAAAGTGTTGATTTGGTGCCCAGACATTTGGAAAATCCCATTGTTGATTCAACGACTCCGAAGGTAGAGAAGACGGAATCCCACCAGCAAACTTCAATGCTCCAGATTTTTTCATGTAGTTTTCCACCTTATCTGCGTATTTTTCAAAACCCGGAATCATTAGTGGATAGACATTGGATGGGTAGAAATTGGAACTGAATTAAAAATGTGATTATTGTAGTTAAGTGCAAAAACTCACTTTTTCTTCTTCAGAGAAACATCAAAATCCAGCCACGCTCCTAGTTTGTCATCCCAAAGAACRTGTTGAATGGCTGCACTAATTTTTTCCAATTTTCGTCTATAGGAAGTCGCTTCACTGAAATTTTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCATAAGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTATCACCTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATCCACTTTCACAGGCAGAAGAAATTCCTCTCCATACATCAGACGGCATCGTTGTATTCATACCAATCGAGTAGTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>370 312 187 131</canonical_bands>
                <polymorphic_bands>370 318 312</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTTCAGAGAAACATCAAAATC</pcr_primer_p1>
		<pcr_primer_p2>CACACTGATCAAATAGTTCCTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCTTCAGAGAAACATCAAAATCCAGCCACGCTCCTAGTTTGTCATCCCAAAGAACATGTTGAATGGCTGCACTAATTTTTTCCAATTTTCGTCTATAGGAAGTCGCTTCACTGAAATTTTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCATAAGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTG</canonical_amplicon>
		<polymorphic_amplicon>TTCTTCAGAGAAACATCAAAATCCAGCCACGCTCCTAGTTTGTCATCCCAAAGAACRTGTTGAATGGCTGCACTAATTTTTTCCAATTTTCGTCTATAGGAAGTCGCTTCACTGAAATTTTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCATAAGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34083</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>710397</contig_pos>
        <strand>+</strand>
        <context>AAGTCGCTTC[A/T]CTGAAATTWT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAATGGCTGCACTAATTTTTTCCAATTTTCGTCTATAGGAAGTCGCTTC</left_flank>
        <right_flank>CTGAAATTTTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTT</right_flank>
        <qual_score>149</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTGTTAGGACATCTAAGGCAATTAGAAAACAAATGAAATCCCAACAAATGATCACAGAATCTTTGAAAATAATAATAAATCCATTTTTTTCAAAATTACCTGTTGAAGGAAACTATTACTTGTCGCTAGAAAACTTTGAATGACAAAGTGTTGATTTGGTGCCCAGACATTTGGAAAATCCCATTGTTGATTCAACGACTCCGAAGGTAGAGAAGACGGAATCCCACCAGCAAACTTCAATGCTCCAGATTTTTTCATGTAGTTTTCCACCTTATCTGCGTATTTTTCAAAACCCGGAATCATTAGTGGATAGACATTGGATGGGTAGAAATTGGAACTGAATTAAAAATGTGATTATTGTAGTTAAGTGCAAAAACTCACTTTTTCTTCTTCAGAGAAACATCAAAATCCAGCCACGCTCCTAGTTTGTCATCCCAAAGAACATGTTGAATGGCTGCACTAATTTTTTCCAATTTTCGTCTATAGGAAGTCGCTTCACTGAAATTTTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCATAAGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTATCACCTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATCCACTTTCACAGGCAGAAGAAATTCCTCTCCATACATCAGACGGCATCGTTGTATTCATACCAATCGAGTAGTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTTCTCCCAAAATTCCATTTCCATTATCATGCTGTTCAACCATTTTTCGTCA</canonical>
            <polymorphic>TGTTGTTAGGACATCTAAGGCAATTAGAAAACAAATGAAATCCCAACAAATGATCACAGAATCTTTGAAAATAATAATAAATCCATTTTTTTCAAAATTACCTGTTGAAGGAAACTATTACTTGTCGCTAGAAAACTTTGAATGACAAAGTGTTGATTTGGTGCCCAGACATTTGGAAAATCCCATTGTTGATTCAACGACTCCGAAGGTAGAGAAGACGGAATCCCACCAGCAAACTTCAATGCTCCAGATTTTTTCATGTAGTTTTCCACCTTATCTGCGTATTTTTCAAAACCCGGAATCATTAGTGGATAGACATTGGATGGGTAGAAATTGGAACTGAATTAAAAATGTGATTATTGTAGTTAAGTGCAAAAACTCACTTTTTCTTCTTCAGAGAAACATCAAAATCCAGCCACGCTCCTAGTTTGTCATCCCAAAGAACATGTTGAATGGCTGCACTAATTTTTTCCAATTTTCGTCTATAGGAAGTCGCTTCWCTGAAATTTTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCATAAGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTATCACCTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATCCACTTTCACAGGCAGAAGAAATTCCTCTCCATACATCAGACGGCATCGTTGTATTCATACCAATCGAGTAGTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTTCTCCCAAAATTCCATTTCCATTATCATGCTGTTCAACCATTTTTCGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>136 107 96 68 66 65 56 53 49 45 43 43 39 39 36 17 11 10 8 6 3 2 2</canonical_bands>
                <polymorphic_bands>175 107 96 68 66 65 56 53 49 45 43 43 39 36 17 11 10 8 6 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTTCAGAGAAACATCAAAATC</pcr_primer_p1>
		<pcr_primer_p2>CACACTGATCAAATAGTTCCTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCTTCAGAGAAACATCAAAATCCAGCCACGCTCCTAGTTTGTCATCCCAAAGAACATGTTGAATGGCTGCACTAATTTTTTCCAATTTTCGTCTATAGGAAGTCGCTTCACTGAAATTTTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCATAAGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTG</canonical_amplicon>
		<polymorphic_amplicon>TTCTTCAGAGAAACATCAAAATCCAGCCACGCTCCTAGTTTGTCATCCCAAAGAACATGTTGAATGGCTGCACTAATTTTTTCCAATTTTCGTCTATAGGAAGTCGCTTCWCTGAAATTTTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCATAAGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34084</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>710406</contig_pos>
        <strand>+</strand>
        <context>CWCTGAAATT[A/T]TATTTTTTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCACTAATTTTTTCCAATTTTCGTCTATAGGAAGTCGCTTCACTGAAATT</left_flank>
        <right_flank>TATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAAT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACATCTAAGGCAATTAGAAAACAAATGAAATCCCAACAAATGATCACAGAATCTTTGAAAATAATAATAAATCCATTTTTTTCAAAATTACCTGTTGAAGGAAACTATTACTTGTCGCTAGAAAACTTTGAATGACAAAGTGTTGATTTGGTGCCCAGACATTTGGAAAATCCCATTGTTGATTCAACGACTCCGAAGGTAGAGAAGACGGAATCCCACCAGCAAACTTCAATGCTCCAGATTTTTTCATGTAGTTTTCCACCTTATCTGCGTATTTTTCAAAACCCGGAATCATTAGTGGATAGACATTGGATGGGTAGAAATTGGAACTGAATTAAAAATGTGATTATTGTAGTTAAGTGCAAAAACTCACTTTTTCTTCTTCAGAGAAACATCAAAATCCAGCCACGCTCCTAGTTTGTCATCCCAAAGAACATGTTGAATGGCTGCACTAATTTTTTCCAATTTTCGTCTATAGGAAGTCGCTTCACTGAAATTTTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCATAAGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTATCACCTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATCCACTTTCACAGGCAGAAGAAATTCCTCTCCATACATCAGACGGCATCGTTGTATTCATACCAATCGAGTAGTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTTCTCCCAAAATTCCATTTCCATTATCATGCTGTTCAACCATTTTTCGTCATAACTTCCC</canonical>
            <polymorphic>GACATCTAAGGCAATTAGAAAACAAATGAAATCCCAACAAATGATCACAGAATCTTTGAAAATAATAATAAATCCATTTTTTTCAAAATTACCTGTTGAAGGAAACTATTACTTGTCGCTAGAAAACTTTGAATGACAAAGTGTTGATTTGGTGCCCAGACATTTGGAAAATCCCATTGTTGATTCAACGACTCCGAAGGTAGAGAAGACGGAATCCCACCAGCAAACTTCAATGCTCCAGATTTTTTCATGTAGTTTTCCACCTTATCTGCGTATTTTTCAAAACCCGGAATCATTAGTGGATAGACATTGGATGGGTAGAAATTGGAACTGAATTAAAAATGTGATTATTGTAGTTAAGTGCAAAAACTCACTTTTTCTTCTTCAGAGAAACATCAAAATCCAGCCACGCTCCTAGTTTGTCATCCCAAAGAACATGTTGAATGGCTGCACTAATTTTTTCCAATTTTCGTCTATAGGAAGTCGCTTCACTGAAATTWTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCATAAGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTATCACCTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATCCACTTTCACAGGCAGAAGAAATTCCTCTCCATACATCAGACGGCATCGTTGTATTCATACCAATCGAGTAGTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTTCTCCCAAAATTCCATTTCCATTATCATGCTGTTCAACCATTTTTCGTCATAACTTCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>495 166 139 77 62 51 10</canonical_bands>
                <polymorphic_bands>661 139 77 62 51 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTTCAGAGAAACATCAAAATC</pcr_primer_p1>
		<pcr_primer_p2>CACACTGATCAAATAGTTCCTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCTTCAGAGAAACATCAAAATCCAGCCACGCTCCTAGTTTGTCATCCCAAAGAACATGTTGAATGGCTGCACTAATTTTTTCCAATTTTCGTCTATAGGAAGTCGCTTCACTGAAATTTTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCATAAGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTG</canonical_amplicon>
		<polymorphic_amplicon>TTCTTCAGAGAAACATCAAAATCCAGCCACGCTCCTAGTTTGTCATCCCAAAGAACATGTTGAATGGCTGCACTAATTTTTTCCAATTTTCGTCTATAGGAAGTCGCTTCACTGAAATTWTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCATAAGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34085</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>710497</contig_pos>
        <strand>+</strand>
        <context>TGTTTGCCAT[A/T]AGGACATTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCAT</left_flank>
        <right_flank>AGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAA</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGTTGAAGGAAACTATTACTTGTCGCTAGAAAACTTTGAATGACAAAGTGTTGATTTGGTGCCCAGACATTTGGAAAATCCCATTGTTGATTCAACGACTCCGAAGGTAGAGAAGACGGAATCCCACCAGCAAACTTCAATGCTCCAGATTTTTTCATGTAGTTTTCCACCTTATCTGCGTATTTTTCAAAACCCGGAATCATTAGTGGATAGACATTGGATGGGTAGAAATTGGAACTGAATTAAAAATGTGATTATTGTAGTTAAGTGCAAAAACTCACTTTTTCTTCTTCAGAGAAACATCAAAATCCAGCCACGCTCCTAGTTTGTCATCCCAAAGAACATGTTGAATGGCTGCACTAATTTTTTCCAATTTTCGTCTATAGGAAGTCGCTTCACTGAAATTTTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCATAAGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTATCACCTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATCCACTTTCACAGGCAGAAGAAATTCCTCTCCATACATCAGACGGCATCGTTGTATTCATACCAATCGAGTAGTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTTCTCCCAAAATTCCATTTCCATTATCATGCTGTTCAACCATTTTTCGTCATAACTTCCCGTTGCTTTGGTGTATTCCCATACCATGTGCGGGAATAGTGGAGGTTGAGATCGTCGTGTTAATCTGTAATTTGTTCGGTCTTATATTAAAT</canonical>
            <polymorphic>CCTGTTGAAGGAAACTATTACTTGTCGCTAGAAAACTTTGAATGACAAAGTGTTGATTTGGTGCCCAGACATTTGGAAAATCCCATTGTTGATTCAACGACTCCGAAGGTAGAGAAGACGGAATCCCACCAGCAAACTTCAATGCTCCAGATTTTTTCATGTAGTTTTCCACCTTATCTGCGTATTTTTCAAAACCCGGAATCATTAGTGGATAGACATTGGATGGGTAGAAATTGGAACTGAATTAAAAATGTGATTATTGTAGTTAAGTGCAAAAACTCACTTTTTCTTCTTCAGAGAAACATCAAAATCCAGCCACGCTCCTAGTTTGTCATCCCAAAGAACATGTTGAATGGCTGCACTAATTTTTTCCAATTTTCGTCTATAGGAAGTCGCTTCACTGAAATTTTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCATWAGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTATCACCTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATCCACTTTCACAGGCAGAAGAAATTCCTCTCCATACATCAGACGGCATCGTTGTATTCATACCAATCGAGTAGTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTTCTCCCAAAATTCCATTTCCATTATCATGCTGTTCAACCATTTTTCGTCATAACTTCCCGTTGCTTTGGTGTATTCCCATACCATGTGCGGGAATAGTGGAGGTTGAGATCGTCGTGTTAATCTGTAATTTGTTCGGTCTTATATTAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAATTTTCGTCTATAGGAAGT</pcr_primer_p1>
		<pcr_primer_p2>GATGCAGGGAGATACAACTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCCAATTTTCGTCTATAGGAAGTCGCTTCACTGAAATTTTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCATAAGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTATCACCTACCAGTTGTATCTCCCTGCATC</canonical_amplicon>
		<polymorphic_amplicon>TCCAATTTTCGTCTATAGGAAGTCGCTTCACTGAAATTTTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCATWAGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTATCACCTACCAGTTGTATCTCCCTGCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34086</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>710585</contig_pos>
        <strand>+</strand>
        <context>AAAAATTCTT[A/T]TCMCCTACCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTT</left_flank>
        <right_flank>TCACCTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATC</right_flank>
        <qual_score>149</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGATTCAACGACTCCGAAGGTAGAGAAGACGGAATCCCACCAGCAAACTTCAATGCTCCAGATTTTTTCATGTAGTTTTCCACCTTATCTGCGTATTTTTCAAAACCCGGAATCATTAGTGGATAGACATTGGATGGGTAGAAATTGGAACTGAATTAAAAATGTGATTATTGTAGTTAAGTGCAAAAACTCACTTTTTCTTCTTCAGAGAAACATCAAAATCCAGCCACGCTCCTAGTTTGTCATCCCAAAGAACATGTTGAATGGCTGCACTAATTTTTTCCAATTTTCGTCTATAGGAAGTCGCTTCACTGAAATTTTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCATAAGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTATCACCTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATCCACTTTCACAGGCAGAAGAAATTCCTCTCCATACATCAGACGGCATCGTTGTATTCATACCAATCGAGTAGTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTTCTCCCAAAATTCCATTTCCATTATCATGCTGTTCAACCATTTTTCGTCATAACTTCCCGTTGCTTTGGTGTATTCCCATACCATGTGCGGGAATAGTGGAGGTTGAGATCGTCGTGTTAATCTGTAATTTGTTCGGTCTTATATTAAATCAACTTGTGAAAATTCCTACTGAATATTGCCGGAATTGGGAATGTACCCGAGTGTTGTGACCAGATTCGAGAAATTGTCAATGATCCC</canonical>
            <polymorphic>TTGATTCAACGACTCCGAAGGTAGAGAAGACGGAATCCCACCAGCAAACTTCAATGCTCCAGATTTTTTCATGTAGTTTTCCACCTTATCTGCGTATTTTTCAAAACCCGGAATCATTAGTGGATAGACATTGGATGGGTAGAAATTGGAACTGAATTAAAAATGTGATTATTGTAGTTAAGTGCAAAAACTCACTTTTTCTTCTTCAGAGAAACATCAAAATCCAGCCACGCTCCTAGTTTGTCATCCCAAAGAACATGTTGAATGGCTGCACTAATTTTTTCCAATTTTCGTCTATAGGAAGTCGCTTCACTGAAATTTTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCATAAGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTWTCACCTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATCCACTTTCACAGGCAGAAGAAATTCCTCTCCATACATCAGACGGCATCGTTGTATTCATACCAATCGAGTAGTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTTCTCCCAAAATTCCATTTCCATTATCATGCTGTTCAACCATTTTTCGTCATAACTTCCCGTTGCTTTGGTGTATTCCCATACCATGTGCGGGAATAGTGGAGGTTGAGATCGTCGTGTTAATCTGTAATTTGTTCGGTCTTATATTAAATCAACTTGTGAAAATTCCTACTGAATATTGCCGGAATTGGGAATGTACCCGAGTGTTGTGACCAGATTCGAGAAATTGTCAATGATCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGTCAACAGGAACTATTTGAT</pcr_primer_p1>
		<pcr_primer_p2>CATTCAGACTCTCTCAAACTGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTATCACCTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATCCACTTTCACAGGCAGAAGAAATTCCTCTCCATACATCAGACGGCATCGTTGTATTCATACCAATCGAGTAGTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATG</canonical_amplicon>
		<polymorphic_amplicon>CAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTWTCACCTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATCCACTTTCACAGGCAGAAGAAATTCCTCTCCATACATCAGACGGCATCGTTGTATTCATACCAATCGAGTAGTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34087</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>710588</contig_pos>
        <strand>+</strand>
        <context>AATTCTTWTC[A/C]CCTACCAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTATC</left_flank>
        <right_flank>CCTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATCCAC</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCAACGACTCCGAAGGTAGAGAAGACGGAATCCCACCAGCAAACTTCAATGCTCCAGATTTTTTCATGTAGTTTTCCACCTTATCTGCGTATTTTTCAAAACCCGGAATCATTAGTGGATAGACATTGGATGGGTAGAAATTGGAACTGAATTAAAAATGTGATTATTGTAGTTAAGTGCAAAAACTCACTTTTTCTTCTTCAGAGAAACATCAAAATCCAGCCACGCTCCTAGTTTGTCATCCCAAAGAACATGTTGAATGGCTGCACTAATTTTTTCCAATTTTCGTCTATAGGAAGTCGCTTCACTGAAATTTTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCATAAGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTATCACCTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATCCACTTTCACAGGCAGAAGAAATTCCTCTCCATACATCAGACGGCATCGTTGTATTCATACCAATCGAGTAGTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTTCTCCCAAAATTCCATTTCCATTATCATGCTGTTCAACCATTTTTCGTCATAACTTCCCGTTGCTTTGGTGTATTCCCATACCATGTGCGGGAATAGTGGAGGTTGAGATCGTCGTGTTAATCTGTAATTTGTTCGGTCTTATATTAAATCAACTTGTGAAAATTCCTACTGAATATTGCCGGAATTGGGAATGTACCCGAGTGTTGTGACCAGATTCGAGAAATTGTCAATGATCCCTTT</canonical>
            <polymorphic>ATTCAACGACTCCGAAGGTAGAGAAGACGGAATCCCACCAGCAAACTTCAATGCTCCAGATTTTTTCATGTAGTTTTCCACCTTATCTGCGTATTTTTCAAAACCCGGAATCATTAGTGGATAGACATTGGATGGGTAGAAATTGGAACTGAATTAAAAATGTGATTATTGTAGTTAAGTGCAAAAACTCACTTTTTCTTCTTCAGAGAAACATCAAAATCCAGCCACGCTCCTAGTTTGTCATCCCAAAGAACATGTTGAATGGCTGCACTAATTTTTTCCAATTTTCGTCTATAGGAAGTCGCTTCACTGAAATTTTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCATAAGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTATCMCCTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATCCACTTTCACAGGCAGAAGAAATTCCTCTCCATACATCAGACGGCATCGTTGTATTCATACCAATCGAGTAGTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTTCTCCCAAAATTCCATTTCCATTATCATGCTGTTCAACCATTTTTCGTCATAACTTCCCGTTGCTTTGGTGTATTCCCATACCATGTGCGGGAATAGTGGAGGTTGAGATCGTCGTGTTAATCTGTAATTTGTTCGGTCTTATATTAAATCAACTTGTGAAAATTCCTACTGAATATTGCCGGAATTGGGAATGTACCCGAGTGTTGTGACCAGATTCGAGAAATTGTCAATGATCCCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>136 107 89 66 53 49 45 45 43 43 42 39 39 37 36 32 18 17 17 11 10 8 6 5 3 2 2</canonical_bands>
                <polymorphic_bands>136 107 102 89 66 45 45 43 43 42 39 39 37 36 32 18 17 17 11 10 8 6 5 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGTCAACAGGAACTATTTGAT</pcr_primer_p1>
		<pcr_primer_p2>CATTCAGACTCTCTCAAACTGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTATCACCTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATCCACTTTCACAGGCAGAAGAAATTCCTCTCCATACATCAGACGGCATCGTTGTATTCATACCAATCGAGTAGTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATG</canonical_amplicon>
		<polymorphic_amplicon>CAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTATCMCCTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATCCACTTTCACAGGCAGAAGAAATTCCTCTCCATACATCAGACGGCATCGTTGTATTCATACCAATCGAGTAGTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34088</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>710640</contig_pos>
        <strand>+</strand>
        <context>CCCATCCACT[C/T]TCACAGGCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATCCACT</left_flank>
        <right_flank>TCACAGGCAGAAGAAATTCCTCTCCATACATCAGACGGCATCGTTGTATT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCCAGATTTTTTCATGTAGTTTTCCACCTTATCTGCGTATTTTTCAAAACCCGGAATCATTAGTGGATAGACATTGGATGGGTAGAAATTGGAACTGAATTAAAAATGTGATTATTGTAGTTAAGTGCAAAAACTCACTTTTTCTTCTTCAGAGAAACATCAAAATCCAGCCACGCTCCTAGTTTGTCATCCCAAAGAACATGTTGAATGGCTGCACTAATTTTTTCCAATTTTCGTCTATAGGAAGTCGCTTCACTGAAATTTTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCATAAGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTATCACCTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATCCACTTTCACAGGCAGAAGAAATTCCTCTCCATACATCAGACGGCATCGTTGTATTCATACCAATCGAGTAGTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTTCTCCCAAAATTCCATTTCCATTATCATGCTGTTCAACCATTTTTCGTCATAACTTCCCGTTGCTTTGGTGTATTCCCATACCATGTGCGGGAATAGTGGAGGTTGAGATCGTCGTGTTAATCTGTAATTTGTTCGGTCTTATATTAAATCAACTTGTGAAAATTCCTACTGAATATTGCCGGAATTGGGAATGTACCCGAGTGTTGTGACCAGATTCGAGAAATTGTCAATGATCCCTTTTGTCGTTTCATACATTTTTGATACTAATAATCCTTTGATAATCCAGTAAGTA</canonical>
            <polymorphic>GCTCCAGATTTTTTCATGTAGTTTTCCACCTTATCTGCGTATTTTTCAAAACCCGGAATCATTAGTGGATAGACATTGGATGGGTAGAAATTGGAACTGAATTAAAAATGTGATTATTGTAGTTAAGTGCAAAAACTCACTTTTTCTTCTTCAGAGAAACATCAAAATCCAGCCACGCTCCTAGTTTGTCATCCCAAAGAACATGTTGAATGGCTGCACTAATTTTTTCCAATTTTCGTCTATAGGAAGTCGCTTCACTGAAATTTTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCATAAGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTATCACCTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATCCACTYTCACAGGCAGAAGAAATTCCTCTCCATACATCAGACGGCATCGTTGTATTCATACCAATCGAGTAGTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTTCTCCCAAAATTCCATTTCCATTATCATGCTGTTCAACCATTTTTCGTCATAACTTCCCGTTGCTTTGGTGTATTCCCATACCATGTGCGGGAATAGTGGAGGTTGAGATCGTCGTGTTAATCTGTAATTTGTTCGGTCTTATATTAAATCAACTTGTGAAAATTCCTACTGAATATTGCCGGAATTGGGAATGTACCCGAGTGTTGTGACCAGATTCGAGAAATTGTCAATGATCCCTTTTGTCGTTTCATACATTTTTGATACTAATAATCCTTTGATAATCCAGTAAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGTCAACAGGAACTATTTGAT</pcr_primer_p1>
		<pcr_primer_p2>CATTCAGACTCTCTCAAACTGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTATCACCTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATCCACTTTCACAGGCAGAAGAAATTCCTCTCCATACATCAGACGGCATCGTTGTATTCATACCAATCGAGTAGTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATG</canonical_amplicon>
		<polymorphic_amplicon>CAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTATCACCTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATCCACTYTCACAGGCAGAAGAAATTCCTCTCCATACATCAGACGGCATCGTTGTATTCATACCAATCGAGTAGTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34089</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>710756</contig_pos>
        <strand>+</strand>
        <context>GTCTGAATGG[A/C]TTTTTTTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATGG</left_flank>
        <right_flank>TTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTAGTTAAGTGCAAAAACTCACTTTTTCTTCTTCAGAGAAACATCAAAATCCAGCCACGCTCCTAGTTTGTCATCCCAAAGAACATGTTGAATGGCTGCACTAATTTTTTCCAATTTTCGTCTATAGGAAGTCGCTTCACTGAAATTTTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCATAAGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTATCACCTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATCCACTTTCACAGGCAGAAGAAATTCCTCTCCATACATCAGACGGCATCGTTGTATTCATACCAATCGAGTAGTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTTCTCCCAAAATTCCATTTCCATTATCATGCTGTTCAACCATTTTTCGTCATAACTTCCCGTTGCTTTGGTGTATTCCCATACCATGTGCGGGAATAGTGGAGGTTGAGATCGTCGTGTTAATCTGTAATTTGTTCGGTCTTATATTAAATCAACTTGTGAAAATTCCTACTGAATATTGCCGGAATTGGGAATGTACCCGAGTGTTGTGACCAGATTCGAGAAATTGTCAATGATCCCTTTTGTCGTTTCATACATTTTTGATACTAATAATCCTTTGATAATCCAGTAAGTATCCCAATAAAAGTAGACATCAAATCGACCGCCGGGGACGATGAACGGATTTTGGACTGGTAGAAGGGGATACATGTCTGGATGGGTGAGCACGTCAGAAGTGAATTGGCGGGCGAG</canonical>
            <polymorphic>TTGTAGTTAAGTGCAAAAACTCACTTTTTCTTCTTCAGAGAAACATCAAAATCCAGCCACGCTCCTAGTTTGTCATCCCAAAGAACATGTTGAATGGCTGCACTAATTTTTTCCAATTTTCGTCTATAGGAAGTCGCTTCACTGAAATTTTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCATAAGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTATCACCTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATCCACTTTCACAGGCAGAAGAAATTCCTCTCCATACATCAGACGGCATCGTTGTATTCATACCAATCGAGTAGTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATGGMTTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTTCTCCCAAAATTCCATTTCCATTATCATGCTGTTCAACCATTTTTCGTCATAACTTCCCGTTGCTTTGGTGTATTCCCATACCATGTGCGGGAATAGTGGAGGTTGAGATCGTCGTGTTAATCTGTAATTTGTTCGGTCTTATATTAAATCAACTTGTGAAAATTCCTACTGAATATTGCCGGAATTGGGAATGTACCCGAGTGTTGTGACCAGATTCGAGAAATTGTCAATGATCCCTTTTGTCGTTTCATACATTTTTGATACTAATAATCCTTTGATAATCCAGTAAGTATCCCAATAAAAGTAGACATCAAATCGACCGCCGGGGACGATGAACGGATTTTGGACTGGTAGAAGGGGATACATGTCTGGATGGGTGAGCACGTCAGAAGTGAATTGGCGGGCGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCATACCAATCGAGTAGTCAC</pcr_primer_p1>
		<pcr_primer_p2>ACATGGTATGGGAATACACC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTCATACCAATCGAGTAGTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTTCTCCCAAAATTCCATTTCCATTATCATGCTGTTCAACCATTTTTCGTCATAACTTCCCGTTGCTTTGGTGTATTCCCATACCATGT</canonical_amplicon>
		<polymorphic_amplicon>ATTCATACCAATCGAGTAGTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATGGMTTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTTCTCCCAAAATTCCATTTCCATTATCATGCTGTTCAACCATTTTTCGTCATAACTTCCCGTTGCTTTGGTGTATTCCCATACCATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34090</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>710786</contig_pos>
        <strand></strand>
        <context>TAAAAATCAA[C/A]ATCGATTTAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAA</left_flank>
        <right_flank>ATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTCAGAGAAACATCAAAATCCAGCCACGCTCCTAGTTTGTCATCCCAAAGAACATGTTGAATGGCTGCACTAATTTTTTCCAATTTTCGTCTATAGGAAGTCGCTTCACTGAAATTTTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCATAAGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTATCACCTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATCCACTTTCACAGGCAGAAGAAATTCCTCTCCATACATCAGACGGCATCGTTGTATTCATACCAATCGAGTAGTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTTCTCCCAAAATTCCATTTCCATTATCATGCTGTTCAACCATTTTTCGTCATAACTTCCCGTTGCTTTGGTGTATTCCCATACCATGTGCGGGAATAGTGGAGGTTGAGATCGTCGTGTTAATCTGTAATTTGTTCGGTCTTATATTAAATCAACTTGTGAAAATTCCTACTGAATATTGCCGGAATTGGGAATGTACCCGAGTGTTGTGACCAGATTCGAGAAATTGTCAATGATCCCTTTTGTCGTTTCATACATTTTTGATACTAATAATCCTTTGATAATCCAGTAAGTATCCCAATAAAAGTAGACATCAAATCGACCGCCGGGGACGATGAACGGATTTTGGACTGGTAGAAGGGGATACATGTCTGGATGGGTGAGCACGTCAGAAGTGAATTGGCGGGCGAGCCGTTTCCATCGTTCGTTCAATTCACTTGC</canonical>
            <polymorphic>TTCTTCAGAGAAACATCAAAATCCAGCCACGCTCCTAGTTTGTCATCCCAAAGAACATGTTGAATGGCTGCACTAATTTTTTCCAATTTTCGTCTATAGGAAGTCGCTTCACTGAAATTTTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCATAAGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTATCACCTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATCCACTTTCACAGGCAGAAGAAATTCCTCTCCATACATCAGACGGCATCGTTGTATTCATACCAATCGAGTAGTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAAMATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTTCTCCCAAAATTCCATTTCCATTATCATGCTGTTCAACCATTTTTCGTCATAACTTCCCGTTGCTTTGGTGTATTCCCATACCATGTGCGGGAATAGTGGAGGTTGAGATCGTCGTGTTAATCTGTAATTTGTTCGGTCTTATATTAAATCAACTTGTGAAAATTCCTACTGAATATTGCCGGAATTGGGAATGTACCCGAGTGTTGTGACCAGATTCGAGAAATTGTCAATGATCCCTTTTGTCGTTTCATACATTTTTGATACTAATAATCCTTTGATAATCCAGTAAGTATCCCAATAAAAGTAGACATCAAATCGACCGCCGGGGACGATGAACGGATTTTGGACTGGTAGAAGGGGATACATGTCTGGATGGGTGAGCACGTCAGAAGTGAATTGGCGGGCGAGCCGTTTCCATCGTTCGTTCAATTCACTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAGTTTGAGAGAGTCTGAATG</pcr_primer_p1>
		<pcr_primer_p2>AAATTACAGATTAACACGACGAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GACAGTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTTCTCCCAAAATTCCATTTCCATTATCATGCTGTTCAACCATTTTTCGTCATAACTTCCCGTTGCTTTGGTGTATTCCCATACCATGTGCGGGAATAGTGGAGGTTGAGATCGTCGTGTTAATCTGTAATTT</canonical_amplicon>
		<polymorphic_amplicon>GACAGTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAAMATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTTCTCCCAAAATTCCATTTCCATTATCATGCTGTTCAACCATTTTTCGTCATAACTTCCCGTTGCTTTGGTGTATTCCCATACCATGTGCGGGAATAGTGGAGGTTGAGATCGTCGTGTTAATCTGTAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34091</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>710849</contig_pos>
        <strand>+</strand>
        <context>TCCTGTTTTT[C/T]TCCCAAAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTT</left_flank>
        <right_flank>TCCCAAAATTCCATTTCCATTATCATGCTGTTCAACCATTTTTCGTCATA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGCTGCACTAATTTTTTCCAATTTTCGTCTATAGGAAGTCGCTTCACTGAAATTTTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCATAAGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTATCACCTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATCCACTTTCACAGGCAGAAGAAATTCCTCTCCATACATCAGACGGCATCGTTGTATTCATACCAATCGAGTAGTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTTCTCCCAAAATTCCATTTCCATTATCATGCTGTTCAACCATTTTTCGTCATAACTTCCCGTTGCTTTGGTGTATTCCCATACCATGTGCGGGAATAGTGGAGGTTGAGATCGTCGTGTTAATCTGTAATTTGTTCGGTCTTATATTAAATCAACTTGTGAAAATTCCTACTGAATATTGCCGGAATTGGGAATGTACCCGAGTGTTGTGACCAGATTCGAGAAATTGTCAATGATCCCTTTTGTCGTTTCATACATTTTTGATACTAATAATCCTTTGATAATCCAGTAAGTATCCCAATAAAAGTAGACATCAAATCGACCGCCGGGGACGATGAACGGATTTTGGACTGGTAGAAGGGGATACATGTCTGGATGGGTGAGCACGTCAGAAGTGAATTGGCGGGCGAGCCGTTTCCATCGTTCGTTCAATTCACTTGCGAGATTTCTGGAAATTATTTTGTTGGTTTTTTTATTCAAGCAAGGGACTTTTCTTGAAATTCA</canonical>
            <polymorphic>ATGGCTGCACTAATTTTTTCCAATTTTCGTCTATAGGAAGTCGCTTCACTGAAATTTTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCATAAGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTATCACCTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATCCACTTTCACAGGCAGAAGAAATTCCTCTCCATACATCAGACGGCATCGTTGTATTCATACCAATCGAGTAGTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTTYTCCCAAAATTCCATTTCCATTATCATGCTGTTCAACCATTTTTCGTCATAACTTCCCGTTGCTTTGGTGTATTCCCATACCATGTGCGGGAATAGTGGAGGTTGAGATCGTCGTGTTAATCTGTAATTTGTTCGGTCTTATATTAAATCAACTTGTGAAAATTCCTACTGAATATTGCCGGAATTGGGAATGTACCCGAGTGTTGTGACCAGATTCGAGAAATTGTCAATGATCCCTTTTGTCGTTTCATACATTTTTGATACTAATAATCCTTTGATAATCCAGTAAGTATCCCAATAAAAGTAGACATCAAATCGACCGCCGGGGACGATGAACGGATTTTGGACTGGTAGAAGGGGATACATGTCTGGATGGGTGAGCACGTCAGAAGTGAATTGGCGGGCGAGCCGTTTCCATCGTTCGTTCAATTCACTTGCGAGATTTCTGGAAATTATTTTGTTGGTTTTTTTATTCAAGCAAGGGACTTTTCTTGAAATTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAGTTTGAGAGAGTCTGAATG</pcr_primer_p1>
		<pcr_primer_p2>AAATTACAGATTAACACGACGAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GACAGTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTTCTCCCAAAATTCCATTTCCATTATCATGCTGTTCAACCATTTTTCGTCATAACTTCCCGTTGCTTTGGTGTATTCCCATACCATGTGCGGGAATAGTGGAGGTTGAGATCGTCGTGTTAATCTGTAATTT</canonical_amplicon>
		<polymorphic_amplicon>GACAGTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTTYTCCCAAAATTCCATTTCCATTATCATGCTGTTCAACCATTTTTCGTCATAACTTCCCGTTGCTTTGGTGTATTCCCATACCATGTGCGGGAATAGTGGAGGTTGAGATCGTCGTGTTAATCTGTAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34092</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>710871</contig_pos>
        <strand>+</strand>
        <context>CATTTCCATT[A/T]TCATGCTGTY</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACCATCCACTTCAATAGTCCTGTTTTTCTCCCAAAATTCCATTTCCATT</left_flank>
        <right_flank>TCATGCTGTTCAACCATTTTTCGTCATAACTTCCCGTTGCTTTGGTGTAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTCGTCTATAGGAAGTCGCTTCACTGAAATTTTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCATAAGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTATCACCTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATCCACTTTCACAGGCAGAAGAAATTCCTCTCCATACATCAGACGGCATCGTTGTATTCATACCAATCGAGTAGTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTTCTCCCAAAATTCCATTTCCATTATCATGCTGTTCAACCATTTTTCGTCATAACTTCCCGTTGCTTTGGTGTATTCCCATACCATGTGCGGGAATAGTGGAGGTTGAGATCGTCGTGTTAATCTGTAATTTGTTCGGTCTTATATTAAATCAACTTGTGAAAATTCCTACTGAATATTGCCGGAATTGGGAATGTACCCGAGTGTTGTGACCAGATTCGAGAAATTGTCAATGATCCCTTTTGTCGTTTCATACATTTTTGATACTAATAATCCTTTGATAATCCAGTAAGTATCCCAATAAAAGTAGACATCAAATCGACCGCCGGGGACGATGAACGGATTTTGGACTGGTAGAAGGGGATACATGTCTGGATGGGTGAGCACGTCAGAAGTGAATTGGCGGGCGAGCCGTTTCCATCGTTCGTTCAATTCACTTGCGAGATTTCTGGAAATTATTTTGTTGGTTTTTTTATTCAAGCAAGGGACTTTTCTTGAAATTCAGCTCATAAAAATACGGCTCTTT</canonical>
            <polymorphic>ATTTTCGTCTATAGGAAGTCGCTTCACTGAAATTTTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCATAAGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTATCACCTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATCCACTTTCACAGGCAGAAGAAATTCCTCTCCATACATCAGACGGCATCGTTGTATTCATACCAATCGAGTAGTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTTCTCCCAAAATTCCATTTCCATTWTCATGCTGTTCAACCATTTTTCGTCATAACTTCCCGTTGCTTTGGTGTATTCCCATACCATGTGCGGGAATAGTGGAGGTTGAGATCGTCGTGTTAATCTGTAATTTGTTCGGTCTTATATTAAATCAACTTGTGAAAATTCCTACTGAATATTGCCGGAATTGGGAATGTACCCGAGTGTTGTGACCAGATTCGAGAAATTGTCAATGATCCCTTTTGTCGTTTCATACATTTTTGATACTAATAATCCTTTGATAATCCAGTAAGTATCCCAATAAAAGTAGACATCAAATCGACCGCCGGGGACGATGAACGGATTTTGGACTGGTAGAAGGGGATACATGTCTGGATGGGTGAGCACGTCAGAAGTGAATTGGCGGGCGAGCCGTTTCCATCGTTCGTTCAATTCACTTGCGAGATTTCTGGAAATTATTTTGTTGGTTTTTTTATTCAAGCAAGGGACTTTTCTTGAAATTCAGCTCATAAAAATACGGCTCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAGTTTGAGAGAGTCTGAATG</pcr_primer_p1>
		<pcr_primer_p2>AAATTACAGATTAACACGACGAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GACAGTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTTCTCCCAAAATTCCATTTCCATTATCATGCTGTTCAACCATTTTTCGTCATAACTTCCCGTTGCTTTGGTGTATTCCCATACCATGTGCGGGAATAGTGGAGGTTGAGATCGTCGTGTTAATCTGTAATTT</canonical_amplicon>
		<polymorphic_amplicon>GACAGTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTTCTCCCAAAATTCCATTTCCATTWTCATGCTGTTCAACCATTTTTCGTCATAACTTCCCGTTGCTTTGGTGTATTCCCATACCATGTGCGGGAATAGTGGAGGTTGAGATCGTCGTGTTAATCTGTAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34093</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>710881</contig_pos>
        <strand>+</strand>
        <context>WTCATGCTGT[C/T]CAACCATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAATAGTCCTGTTTTTCTCCCAAAATTCCATTTCCATTATCATGCTGT</left_flank>
        <right_flank>CAACCATTTTTCGTCATAACTTCCCGTTGCTTTGGTGTATTCCCATACCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGGAAGTCGCTTCACTGAAATTTTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCATAAGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTATCACCTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATCCACTTTCACAGGCAGAAGAAATTCCTCTCCATACATCAGACGGCATCGTTGTATTCATACCAATCGAGTAGTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTTCTCCCAAAATTCCATTTCCATTATCATGCTGTTCAACCATTTTTCGTCATAACTTCCCGTTGCTTTGGTGTATTCCCATACCATGTGCGGGAATAGTGGAGGTTGAGATCGTCGTGTTAATCTGTAATTTGTTCGGTCTTATATTAAATCAACTTGTGAAAATTCCTACTGAATATTGCCGGAATTGGGAATGTACCCGAGTGTTGTGACCAGATTCGAGAAATTGTCAATGATCCCTTTTGTCGTTTCATACATTTTTGATACTAATAATCCTTTGATAATCCAGTAAGTATCCCAATAAAAGTAGACATCAAATCGACCGCCGGGGACGATGAACGGATTTTGGACTGGTAGAAGGGGATACATGTCTGGATGGGTGAGCACGTCAGAAGTGAATTGGCGGGCGAGCCGTTTCCATCGTTCGTTCAATTCACTTGCGAGATTTCTGGAAATTATTTTGTTGGTTTTTTTATTCAAGCAAGGGACTTTTCTTGAAATTCAGCTCATAAAAATACGGCTCTTTATGACAAGGG</canonical>
            <polymorphic>ATAGGAAGTCGCTTCACTGAAATTTTATTTTTTGGGAATAAGTTTCAAAAAAATCTTACTCAATTTTCAAAAAATGTTCCGCATACAAAGCCATGTATCTATAATTGTTTGCCATAAGGACATTCAAGTCAACAGGAACTATTTGATCAGTGTGTATATTCGACAAGGCGGCTGTAAACATTATTGAATTTTAAAAAATTCTTATCACCTACCAGTTGTATCTCCCTGCATCCATCGAGAGCTGAAATCCCATCCACTTTCACAGGCAGAAGAAATTCCTCTCCATACATCAGACGGCATCGTTGTATTCATACCAATCGAGTAGTCACCACGGAAATTCTCCGGTCTCGGACAGTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTTCTCCCAAAATTCCATTTCCATTATCATGCTGTYCAACCATTTTTCGTCATAACTTCCCGTTGCTTTGGTGTATTCCCATACCATGTGCGGGAATAGTGGAGGTTGAGATCGTCGTGTTAATCTGTAATTTGTTCGGTCTTATATTAAATCAACTTGTGAAAATTCCTACTGAATATTGCCGGAATTGGGAATGTACCCGAGTGTTGTGACCAGATTCGAGAAATTGTCAATGATCCCTTTTGTCGTTTCATACATTTTTGATACTAATAATCCTTTGATAATCCAGTAAGTATCCCAATAAAAGTAGACATCAAATCGACCGCCGGGGACGATGAACGGATTTTGGACTGGTAGAAGGGGATACATGTCTGGATGGGTGAGCACGTCAGAAGTGAATTGGCGGGCGAGCCGTTTCCATCGTTCGTTCAATTCACTTGCGAGATTTCTGGAAATTATTTTGTTGGTTTTTTTATTCAAGCAAGGGACTTTTCTTGAAATTCAGCTCATAAAAATACGGCTCTTTATGACAAGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAGTTTGAGAGAGTCTGAATG</pcr_primer_p1>
		<pcr_primer_p2>AAATTACAGATTAACACGACGAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GACAGTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTTCTCCCAAAATTCCATTTCCATTATCATGCTGTTCAACCATTTTTCGTCATAACTTCCCGTTGCTTTGGTGTATTCCCATACCATGTGCGGGAATAGTGGAGGTTGAGATCGTCGTGTTAATCTGTAATTT</canonical_amplicon>
		<polymorphic_amplicon>GACAGTTTGAGAGAGTCTGAATGGTTTTTTTTTCGAAATTAATTTAAAAATCAACATCGATTTAGATACCTTATAAGCAAACAAAGTGTGACCATCCACTTCAATAGTCCTGTTTTTCTCCCAAAATTCCATTTCCATTATCATGCTGTYCAACCATTTTTCGTCATAACTTCCCGTTGCTTTGGTGTATTCCCATACCATGTGCGGGAATAGTGGAGGTTGAGATCGTCGTGTTAATCTGTAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34094</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>712469</contig_pos>
        <strand>+</strand>
        <context>ACAAATAGAA[A/G]ACCAATAATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAATTCCCATAAAACTTGGATTTTCAGGCTTGACATCATACAAATAGAA</left_flank>
        <right_flank>ACCAATAATCAAGAGAACAGTTTGAGTAAATAAGCGCAACGGGGAAAAGG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCGAAACTTTCTTCACAAAAGCTCCGAAACTTGTCGACGCTCATGGGGTATGGCAACCTGAAAATTTTCATAAAATTTTCAAAATTTTTTAACCCTTCGGAAAAAAACTCACTTTTTGAAATTCGCCAAAACTTCTTTAGCTGGAACCCTCAGTTTGTCTCCTGGACAAGTTTTTTGCAGTCCAAACTGCCACGAATTTTGAAGAATTTCTCCGTGACAATATATTTCCGATAATGGTCCAGTACAAAGACTTTCATTGCACGGGACCTCCATCGGACCCAATAAAAATGTGGTTTGAGGCTGAAAAAGTGTCGCTGGTGTTGCGAAATTCACAAATTTCAACTCACCAAAAAAGCATTTGTCAATCCAAATTCTAAATTTGATTGAACCCACGAAGAACCAAGATATAAACATAATATCGTACCCAACCATCGCATCTTCACTCGAGTAATTCCCATAAAACTTGGATTTTCAGGCTTGACATCATACAAATAGAAGACCAATAATCAAGAGAACAGTTTGAGTAAATAAGCGCAACGGGGAAAAGGGAGGAGGTAAAAATGGGGAAAAGAGAAAAAAAGAGAAAGAGTAACAAGACAAAAAAAGAGGCAAACATTGCTGGATGGCAGAGAAAGAAGACTTATTTTTATTATAAAAATGTGAGAATGGCGAAAAAAGAGAGAGGACATATGTATGGCAACTCAAATCCGACAGCATTCGCCACAGAATCTCCGGCTTAATTTCTGGACAACAAAAAATATGCTATACTTCTATGCATGGACACAAACACTCATTTCTTATCAACATTCGTTTTATCAGTTTCGCCTGTAAATGTTTTGTACCAAATTTTCCGTGTTTATTTGGTTAATTCAAATATTGTAAATATTTTTCTAGACAAAAGGAAACGAATTCGTCCATTGAAATGTTTAATGCATGAGTGTAGTTTAATCGCTGAAAATGGAATGTGTTTTTGAGAGTCTTCTTGTTTTCAGTGATGA</canonical>
            <polymorphic>GCTCGAAACTTTCTTCACAAAAGCTCCGAAACTTGTCGACGCTCATGGGGTATGGCAACCTGAAAATTTTCATAAAATTTTCAAAATTTTTTAACCCTTCGGAAAAAAACTCACTTTTTGAAATTCGCCAAAACTTCTTTAGCTGGAACCCTCAGTTTGTCTCCTGGACAAGTTTTTTGCAGTCCAAACTGCCACGAATTTTGAAGAATTTCTCCGTGACAATATATTTCCGATAATGGTCCAGTACAAAGACTTTCATTGCACGGGACCTCCATCGGACCCAATAAAAATGTGGTTTGAGGCTGAAAAAGTGTCGCTGGTGTTGCGAAATTCACAAATTTCAACTCACCAAAAAAGCATTTGTCAATCCAAATTCTAAATTTGATTGAACCCACGAAGAACCAAGATATAAACATAATATCGTACCCAACCATCGCATCTTCACTCGAGTAATTCCCATAAAACTTGGATTTTCAGGCTTGACATCATACAAATAGAARACCAATAATCAAGAGAACAGTTTGAGTAAATAAGCGCAACGGGGAAAAGGGAGGAGGTAAAAATGGGGAAAAGAGAAAAAAAGAGAAAGAGTAACAAGACAAAAAAAGAGGCAAACATTGCTGGATGGCAGAGAAAGAAGACTTATTTTTATTATAAAAATGTGAGAATGGCGAAAAAAGAGAGAGGACATATGTATGGCAACTCAAATCCGACAGCATTCGCCACAGAATCTCCGGCTTAATTTCTGGACAACAAAAAATATGCTATACTTCTATGCATGGACACAAACACTCATTTCTTATCAACATTCGTTTTATCAGTTTCGCCTGTAAATGTTTTGTACCAAATTTTCCGTGTTTATTTGGTTAATTCAAATATTGTAAATATTTTTCTAGACAAAAGGAAACGAATTCGTCCATTGAAATGTTTAATGCATGAGTGTAGTTTAATCGCTGAAAATGGAATGTGTTTTTGAGAGTCTTCTTGTTTTCAGTGATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATTCACAAATTTCAACTCAC</pcr_primer_p1>
		<pcr_primer_p2>TTCTCTTTTCCCCATTTTTAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAAATTCACAAATTTCAACTCACCAAAAAAGCATTTGTCAATCCAAATTCTAAATTTGATTGAACCCACGAAGAACCAAGATATAAACATAATATCGTACCCAACCATCGCATCTTCACTCGAGTAATTCCCATAAAACTTGGATTTTCAGGCTTGACATCATACAAATAGAAGACCAATAATCAAGAGAACAGTTTGAGTAAATAAGCGCAACGGGGAAAAGGGAGGAGGTAAAAATGGGGAAAAGAGAA</canonical_amplicon>
		<polymorphic_amplicon>GAAATTCACAAATTTCAACTCACCAAAAAAGCATTTGTCAATCCAAATTCTAAATTTGATTGAACCCACGAAGAACCAAGATATAAACATAATATCGTACCCAACCATCGCATCTTCACTCGAGTAATTCCCATAAAACTTGGATTTTCAGGCTTGACATCATACAAATAGAARACCAATAATCAAGAGAACAGTTTGAGTAAATAAGCGCAACGGGGAAAAGGGAGGAGGTAAAAATGGGGAAAAGAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34095</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>712783</contig_pos>
        <strand></strand>
        <context>CAACATTCGT[T/C]YTATCAGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCTATACTTCTATGCATGGACACAAACACTCATTTCTTATCAACATTCGT</left_flank>
        <right_flank>TTATCAGTTTCGCCTGTAAATGTTTTGTACCAAATTTTCCGTGTTTATTT</right_flank>
        <qual_score>47</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCTGGTGTTGCGAAATTCACAAATTTCAACTCACCAAAAAAGCATTTGTCAATCCAAATTCTAAATTTGATTGAACCCACGAAGAACCAAGATATAAACATAATATCGTACCCAACCATCGCATCTTCACTCGAGTAATTCCCATAAAACTTGGATTTTCAGGCTTGACATCATACAAATAGAAGACCAATAATCAAGAGAACAGTTTGAGTAAATAAGCGCAACGGGGAAAAGGGAGGAGGTAAAAATGGGGAAAAGAGAAAAAAAGAGAAAGAGTAACAAGACAAAAAAAGAGGCAAACATTGCTGGATGGCAGAGAAAGAAGACTTATTTTTATTATAAAAATGTGAGAATGGCGAAAAAAGAGAGAGGACATATGTATGGCAACTCAAATCCGACAGCATTCGCCACAGAATCTCCGGCTTAATTTCTGGACAACAAAAAATATGCTATACTTCTATGCATGGACACAAACACTCATTTCTTATCAACATTCGTTTTATCAGTTTCGCCTGTAAATGTTTTGTACCAAATTTTCCGTGTTTATTTGGTTAATTCAAATATTGTAAATATTTTTCTAGACAAAAGGAAACGAATTCGTCCATTGAAATGTTTAATGCATGAGTGTAGTTTAATCGCTGAAAATGGAATGTGTTTTTGAGAGTCTTCTTGTTTTCAGTGATGAATGGGGTGCAGAAATAGATGATCGCTCTGGAAAATTTTTCACTAGAAAGGATAAAACCTCTACCGGCCAATAAGATACTAAAAACCTTTTTTTTTCGATCGATTTTTGGCAATTTTTCCAATTTTCCGGAGTTCGGCGCTTGGCTGTCAAGTTTCCAACCAGTTTGAAAATTATGAAGAGTGTAAAACAGGGCTAGTTAAAAAATTTGCATTCGCAGAATTTTTTGAAAGTTCCTAGTTTTTTCAGATATTTGAAGATTTCTGAAACATCTGACTTTTCCTCATATTCCATACACAAACAGGGCAAAAAAAGGT</canonical>
            <polymorphic>CGCTGGTGTTGCGAAATTCACAAATTTCAACTCACCAAAAAAGCATTTGTCAATCCAAATTCTAAATTTGATTGAACCCACGAAGAACCAAGATATAAACATAATATCGTACCCAACCATCGCATCTTCACTCGAGTAATTCCCATAAAACTTGGATTTTCAGGCTTGACATCATACAAATAGAAGACCAATAATCAAGAGAACAGTTTGAGTAAATAAGCGCAACGGGGAAAAGGGAGGAGGTAAAAATGGGGAAAAGAGAAAAAAAGAGAAAGAGTAACAAGACAAAAAAAGAGGCAAACATTGCTGGATGGCAGAGAAAGAAGACTTATTTTTATTATAAAAATGTGAGAATGGCGAAAAAAGAGAGAGGACATATGTATGGCAACTCAAATCCGACAGCATTCGCCACAGAATCTCCGGCTTAATTTCTGGACAACAAAAAATATGCTATACTTCTATGCATGGACACAAACACTCATTTCTTATCAACATTCGTYTTATCAGTTTCGCCTGTAAATGTTTTGTACCAAATTTTCCGTGTTTATTTGGTTAATTCAAATATTGTAAATATTTTTCTAGACAAAAGGAAACGAATTCGTCCATTGAAATGTTTAATGCATGAGTGTAGTTTAATCGCTGAAAATGGAATGTGTTTTTGAGAGTCTTCTTGTTTTCAGTGATGAATGGGGTGCAGAAATAGATGATCGCTCTGGAAAATTTTTCACTAGAAAGGATAAAACCTCTACCGGCCAATAAGATACTAAAAACCTTTTTTTTTCGATCGATTTTTGGCAATTTTTCCAATTTTCCGGAGTTCGGCGCTTGGCTGTCAAGTTTCCAACCAGTTTGAAAATTATGAAGAGTGTAAAACAGGGCTAGTTAAAAAATTTGCATTCGCAGAATTTTTTGAAAGTTCCTAGTTTTTTCAGATATTTGAAGATTTCTGAAACATCTGACTTTTCCTCATATTCCATACACAAACAGGGCAAAAAAAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTAATTTCTGGACAACAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAGACTCTCAAAAACACAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCTTAATTTCTGGACAACAAAAAATATGCTATACTTCTATGCATGGACACAAACACTCATTTCTTATCAACATTCGTTTTATCAGTTTCGCCTGTAAATGTTTTGTACCAAATTTTCCGTGTTTATTTGGTTAATTCAAATATTGTAAATATTTTTCTAGACAAAAGGAAACGAATTCGTCCATTGAAATGTTTAATGCATGAGTGTAGTTTAATCGCTGAAAATGGAATGTGTTTTTGAGAGTCTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>GCTTAATTTCTGGACAACAAAAAATATGCTATACTTCTATGCATGGACACAAACACTCATTTCTTATCAACATTCGTYTTATCAGTTTCGCCTGTAAATGTTTTGTACCAAATTTTCCGTGTTTATTTGGTTAATTCAAATATTGTAAATATTTTTCTAGACAAAAGGAAACGAATTCGTCCATTGAAATGTTTAATGCATGAGTGTAGTTTAATCGCTGAAAATGGAATGTGTTTTTGAGAGTCTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34096</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>712784</contig_pos>
        <strand></strand>
        <context>AACATTCGTY[T/C]TATCAGTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTATACTTCTATGCATGGACACAAACACTCATTTCTTATCAACATTCGTT</left_flank>
        <right_flank>TATCAGTTTCGCCTGTAAATGTTTTGTACCAAATTTTCCGTGTTTATTTG</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTGGTGTTGCGAAATTCACAAATTTCAACTCACCAAAAAAGCATTTGTCAATCCAAATTCTAAATTTGATTGAACCCACGAAGAACCAAGATATAAACATAATATCGTACCCAACCATCGCATCTTCACTCGAGTAATTCCCATAAAACTTGGATTTTCAGGCTTGACATCATACAAATAGAAGACCAATAATCAAGAGAACAGTTTGAGTAAATAAGCGCAACGGGGAAAAGGGAGGAGGTAAAAATGGGGAAAAGAGAAAAAAAGAGAAAGAGTAACAAGACAAAAAAAGAGGCAAACATTGCTGGATGGCAGAGAAAGAAGACTTATTTTTATTATAAAAATGTGAGAATGGCGAAAAAAGAGAGAGGACATATGTATGGCAACTCAAATCCGACAGCATTCGCCACAGAATCTCCGGCTTAATTTCTGGACAACAAAAAATATGCTATACTTCTATGCATGGACACAAACACTCATTTCTTATCAACATTCGTTTTATCAGTTTCGCCTGTAAATGTTTTGTACCAAATTTTCCGTGTTTATTTGGTTAATTCAAATATTGTAAATATTTTTCTAGACAAAAGGAAACGAATTCGTCCATTGAAATGTTTAATGCATGAGTGTAGTTTAATCGCTGAAAATGGAATGTGTTTTTGAGAGTCTTCTTGTTTTCAGTGATGAATGGGGTGCAGAAATAGATGATCGCTCTGGAAAATTTTTCACTAGAAAGGATAAAACCTCTACCGGCCAATAAGATACTAAAAACCTTTTTTTTTCGATCGATTTTTGGCAATTTTTCCAATTTTCCGGAGTTCGGCGCTTGGCTGTCAAGTTTCCAACCAGTTTGAAAATTATGAAGAGTGTAAAACAGGGCTAGTTAAAAAATTTGCATTCGCAGAATTTTTTGAAAGTTCCTAGTTTTTTCAGATATTTGAAGATTTCTGAAACATCTGACTTTTCCTCATATTCCATACACAAACAGGGCAAAAAAAGGTG</canonical>
            <polymorphic>GCTGGTGTTGCGAAATTCACAAATTTCAACTCACCAAAAAAGCATTTGTCAATCCAAATTCTAAATTTGATTGAACCCACGAAGAACCAAGATATAAACATAATATCGTACCCAACCATCGCATCTTCACTCGAGTAATTCCCATAAAACTTGGATTTTCAGGCTTGACATCATACAAATAGAAGACCAATAATCAAGAGAACAGTTTGAGTAAATAAGCGCAACGGGGAAAAGGGAGGAGGTAAAAATGGGGAAAAGAGAAAAAAAGAGAAAGAGTAACAAGACAAAAAAAGAGGCAAACATTGCTGGATGGCAGAGAAAGAAGACTTATTTTTATTATAAAAATGTGAGAATGGCGAAAAAAGAGAGAGGACATATGTATGGCAACTCAAATCCGACAGCATTCGCCACAGAATCTCCGGCTTAATTTCTGGACAACAAAAAATATGCTATACTTCTATGCATGGACACAAACACTCATTTCTTATCAACATTCGTTYTATCAGTTTCGCCTGTAAATGTTTTGTACCAAATTTTCCGTGTTTATTTGGTTAATTCAAATATTGTAAATATTTTTCTAGACAAAAGGAAACGAATTCGTCCATTGAAATGTTTAATGCATGAGTGTAGTTTAATCGCTGAAAATGGAATGTGTTTTTGAGAGTCTTCTTGTTTTCAGTGATGAATGGGGTGCAGAAATAGATGATCGCTCTGGAAAATTTTTCACTAGAAAGGATAAAACCTCTACCGGCCAATAAGATACTAAAAACCTTTTTTTTTCGATCGATTTTTGGCAATTTTTCCAATTTTCCGGAGTTCGGCGCTTGGCTGTCAAGTTTCCAACCAGTTTGAAAATTATGAAGAGTGTAAAACAGGGCTAGTTAAAAAATTTGCATTCGCAGAATTTTTTGAAAGTTCCTAGTTTTTTCAGATATTTGAAGATTTCTGAAACATCTGACTTTTCCTCATATTCCATACACAAACAGGGCAAAAAAAGGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTAATTTCTGGACAACAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAGACTCTCAAAAACACAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCTTAATTTCTGGACAACAAAAAATATGCTATACTTCTATGCATGGACACAAACACTCATTTCTTATCAACATTCGTTTTATCAGTTTCGCCTGTAAATGTTTTGTACCAAATTTTCCGTGTTTATTTGGTTAATTCAAATATTGTAAATATTTTTCTAGACAAAAGGAAACGAATTCGTCCATTGAAATGTTTAATGCATGAGTGTAGTTTAATCGCTGAAAATGGAATGTGTTTTTGAGAGTCTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>GCTTAATTTCTGGACAACAAAAAATATGCTATACTTCTATGCATGGACACAAACACTCATTTCTTATCAACATTCGTTYTATCAGTTTCGCCTGTAAATGTTTTGTACCAAATTTTCCGTGTTTATTTGGTTAATTCAAATATTGTAAATATTTTTCTAGACAAAAGGAAACGAATTCGTCCATTGAAATGTTTAATGCATGAGTGTAGTTTAATCGCTGAAAATGGAATGTGTTTTTGAGAGTCTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34097</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>712919</contig_pos>
        <strand></strand>
        <context>GTGTAGTTTA[A/G]TCGCTGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGGAAACGAATTCGTCCATTGAAATGTTTAATGCATGAGTGTAGTTTA</left_flank>
        <right_flank>TCGCTGAAAATGGAATGTGTTTTTGAGAGTCTTCTTGTTTTCAGTGATGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATTCCCATAAAACTTGGATTTTCAGGCTTGACATCATACAAATAGAAGACCAATAATCAAGAGAACAGTTTGAGTAAATAAGCGCAACGGGGAAAAGGGAGGAGGTAAAAATGGGGAAAAGAGAAAAAAAGAGAAAGAGTAACAAGACAAAAAAAGAGGCAAACATTGCTGGATGGCAGAGAAAGAAGACTTATTTTTATTATAAAAATGTGAGAATGGCGAAAAAAGAGAGAGGACATATGTATGGCAACTCAAATCCGACAGCATTCGCCACAGAATCTCCGGCTTAATTTCTGGACAACAAAAAATATGCTATACTTCTATGCATGGACACAAACACTCATTTCTTATCAACATTCGTTTTATCAGTTTCGCCTGTAAATGTTTTGTACCAAATTTTCCGTGTTTATTTGGTTAATTCAAATATTGTAAATATTTTTCTAGACAAAAGGAAACGAATTCGTCCATTGAAATGTTTAATGCATGAGTGTAGTTTAATCGCTGAAAATGGAATGTGTTTTTGAGAGTCTTCTTGTTTTCAGTGATGAATGGGGTGCAGAAATAGATGATCGCTCTGGAAAATTTTTCACTAGAAAGGATAAAACCTCTACCGGCCAATAAGATACTAAAAACCTTTTTTTTTCGATCGATTTTTGGCAATTTTTCCAATTTTCCGGAGTTCGGCGCTTGGCTGTCAAGTTTCCAACCAGTTTGAAAATTATGAAGAGTGTAAAACAGGGCTAGTTAAAAAATTTGCATTCGCAGAATTTTTTGAAAGTTCCTAGTTTTTTCAGATATTTGAAGATTTCTGAAACATCTGACTTTTCCTCATATTCCATACACAAACAGGGCAAAAAAAGGTGTCTTTCAGGAATCAGCAAACATCTGGAAAACTAGAAATTTTTTAAAAATTCTGTAATTTGTTGATCTAGGTCAGTTTCACACCCTCTGATTTTTTTAAAGTGATCCAAAAACTTGAAAGCCGAGCTTCAGATTCC</canonical>
            <polymorphic>TAATTCCCATAAAACTTGGATTTTCAGGCTTGACATCATACAAATAGAAGACCAATAATCAAGAGAACAGTTTGAGTAAATAAGCGCAACGGGGAAAAGGGAGGAGGTAAAAATGGGGAAAAGAGAAAAAAAGAGAAAGAGTAACAAGACAAAAAAAGAGGCAAACATTGCTGGATGGCAGAGAAAGAAGACTTATTTTTATTATAAAAATGTGAGAATGGCGAAAAAAGAGAGAGGACATATGTATGGCAACTCAAATCCGACAGCATTCGCCACAGAATCTCCGGCTTAATTTCTGGACAACAAAAAATATGCTATACTTCTATGCATGGACACAAACACTCATTTCTTATCAACATTCGTTTTATCAGTTTCGCCTGTAAATGTTTTGTACCAAATTTTCCGTGTTTATTTGGTTAATTCAAATATTGTAAATATTTTTCTAGACAAAAGGAAACGAATTCGTCCATTGAAATGTTTAATGCATGAGTGTAGTTTARTCGCTGAAAATGGAATGTGTTTTTGAGAGTCTTCTTGTTTTCAGTGATGAATGGGGTGCAGAAATAGATGATCGCTCTGGAAAATTTTTCACTAGAAAGGATAAAACCTCTACCGGCCAATAAGATACTAAAAACCTTTTTTTTTCGATCGATTTTTGGCAATTTTTCCAATTTTCCGGAGTTCGGCGCTTGGCTGTCAAGTTTCCAACCAGTTTGAAAATTATGAAGAGTGTAAAACAGGGCTAGTTAAAAAATTTGCATTCGCAGAATTTTTTGAAAGTTCCTAGTTTTTTCAGATATTTGAAGATTTCTGAAACATCTGACTTTTCCTCATATTCCATACACAAACAGGGCAAAAAAAGGTGTCTTTCAGGAATCAGCAAACATCTGGAAAACTAGAAATTTTTTAAAAATTCTGTAATTTGTTGATCTAGGTCAGTTTCACACCCTCTGATTTTTTTAAAGTGATCCAAAAACTTGAAAGCCGAGCTTCAGATTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>289 250 160 128 62 53 40 18</canonical_bands>
                <polymorphic_bands>289 268 160 128 62 53 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGACACAAACACTCATTTCTTAT</pcr_primer_p1>
		<pcr_primer_p2>CAGAGCGATCATCTATTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGACACAAACACTCATTTCTTATCAACATTCGTTTTATCAGTTTCGCCTGTAAATGTTTTGTACCAAATTTTCCGTGTTTATTTGGTTAATTCAAATATTGTAAATATTTTTCTAGACAAAAGGAAACGAATTCGTCCATTGAAATGTTTAATGCATGAGTGTAGTTTAATCGCTGAAAATGGAATGTGTTTTTGAGAGTCTTCTTGTTTTCAGTGATGAATGGGGTGCAGAAATAGATGATCGCTCTG</canonical_amplicon>
		<polymorphic_amplicon>GGACACAAACACTCATTTCTTATCAACATTCGTTTTATCAGTTTCGCCTGTAAATGTTTTGTACCAAATTTTCCGTGTTTATTTGGTTAATTCAAATATTGTAAATATTTTTCTAGACAAAAGGAAACGAATTCGTCCATTGAAATGTTTAATGCATGAGTGTAGTTTARTCGCTGAAAATGGAATGTGTTTTTGAGAGTCTTCTTGTTTTCAGTGATGAATGGGGTGCAGAAATAGATGATCGCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34098</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>719038</contig_pos>
        <strand></strand>
        <context>CCATGTTGCC[A/G]TACTAGCGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTACAGTCAGAAAATATGTATGGTCACCCAACCATAACTCCATGTTGCC</left_flank>
        <right_flank>TACTAGCGAGAACGCGAACGTTCTTCCACGGGGCGGCACACTCCTCGTTT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAAGACTTACCGAAATAGAGTCTGGCATAATCACTCCAACTTTTCTTGCTTTCTGTTCGTCAGCGAATGGATGCTCAAAAAAGAGCTTTTCTAATTTCTGATGTCTTGTTTCCTTGAACCATTTCCTAATCTGCAATTCATAGTTTTGTTTGTCAAACGCTCATGTAAGACATACCATGTCTTCTGTCCATCCGGTTGTTTCCATAAGCTTTGTGTTGTTATATTCATCAAATTTTGGAATTTCTTCCAAGAGATTAGCTAACACCAAGTGTGCTTCTTTTTTCTCCTGGGCGCTGGGTTTATTGATCTTTAACAAAAAAAAGAATTATAGAAGATCGTGTATTGAAAGACCACTGGATTACGTTTTTTGTTGTTTAACAATAAGTTTCTTAAAGGAGGCCAGACATGAAAAATTTCAAAGTTCTAGTCTTTTGATATATGACACAGTACAGTCAGAAAATATGTATGGTCACCCAACCATAACTCCATGTTGCCATACTAGCGAGAACGCGAACGTTCTTCCACGGGGCGGCACACTCCTCGTTTCATAGCCGTCTTAGCGGCAGTAGACGACAGGCGCCGTTTGGTGTAGAGGTGAACGCGCTGGTCTATCGGTCGCGCATCGCGGGTTCGATTCCCATGTGTCCGTTTTCGTTTTTTTTTGTTTTCATGCGGCGACATCATGGAATGACAGAATATCGACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTTAAAAATATTAATGCTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATGCATGATCTCGCTCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTTAAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAGGTTTTCATGTAAACCAAATATCACTGATAACTTATCGGATGTTAGTTTTAATCAGGGTTACTTACTACAGGAAACGTTG</canonical>
            <polymorphic>AAAAAAAGACTTACCGAAATAGAGTCTGGCATAATCACTCCAACTTTTCTTGCTTTCTGTTCGTCAGCGAATGGATGCTCAAAAAAGAGCTTTTCTAATTTCTGATGTCTTGTTTCCTTGAACCATTTCCTAATCTGCAATTCATAGTTTTGTTTGTCAAACGCTCATGTAAGACATACCATGTCTTCTGTCCATCCGGTTGTTTCCATAAGCTTTGTGTTGTTATATTCATCAAATTTTGGAATTTCTTCCAAGAGATTAGCTAACACCAAGTGTGCTTCTTTTTTCTCCTGGGCGCTGGGTTTATTGATCTTTAACAAAAAAAAGAATTATAGAAGATCGTGTATTGAAAGACCACTGGATTACGTTTTTTGTTGTTTAACAATAAGTTTCTTAAAGGAGGCCAGACATGAAAAATTTCAAAGTTCTAGTCTTTTGATATATGACACAGTACAGTCAGAAAATATGTATGGTCACCCAACCATAACTCCATGTTGCCRTACTAGCGAGAACGCGAACGTTCTTCCACGGGGCGGCACACTCCTCGTTTCATAGCCGTCTTAGCGGCAGTAGACGACAGGCGCCGTTTGGTGTAGAGGTGAACGCGCTGGTCTATCGGTCGCGCATCGCGGGTTCGATTCCCATGTGTCCGTTTTCGTTTTTTTTTGTTTTCATGCGGCGACATCATGGAATGACAGAATATCGACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTTAAAAATATTAATGCTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATGCATGATCTCGCTCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTTAAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAGGTTTTCATGTAAACCAAATATCACTGATAACTTATCGGATGTTAGTTTTAATCAGGGTTACTTACTACAGGAAACGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGACCACTGGATTACGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CGTTCACCTCTACACCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AGACCACTGGATTACGTTTTTTGTTGTTTAACAATAAGTTTCTTAAAGGAGGCCAGACATGAAAAATTTCAAAGTTCTAGTCTTTTGATATATGACACAGTACAGTCAGAAAATATGTATGGTCACCCAACCATAACTCCATGTTGCCATACTAGCGAGAACGCGAACGTTCTTCCACGGGGCGGCACACTCCTCGTTTCATAGCCGTCTTAGCGGCAGTAGACGACAGGCGCCGTTTGGTGTAGAGGTGAACG</canonical_amplicon>
		<polymorphic_amplicon>AGACCACTGGATTACGTTTTTTGTTGTTTAACAATAAGTTTCTTAAAGGAGGCCAGACATGAAAAATTTCAAAGTTCTAGTCTTTTGATATATGACACAGTACAGTCAGAAAATATGTATGGTCACCCAACCATAACTCCATGTTGCCRTACTAGCGAGAACGCGAACGTTCTTCCACGGGGCGGCACACTCCTCGTTTCATAGCCGTCTTAGCGGCAGTAGACGACAGGCGCCGTTTGGTGTAGAGGTGAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34099</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>719093</contig_pos>
        <strand></strand>
        <context>TCGTTTCATA[G/A]CCGTCTTAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGCGAGAACGCGAACGTTCTTCCACGGGGCGGCACACTCCTCGTTTCATA</left_flank>
        <right_flank>CCGTCTTAGCGGCAGTAGACGACAGGCGCCGTTTGGTGTAGAGGTGAACG</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGTTCGTCAGCGAATGGATGCTCAAAAAAGAGCTTTTCTAATTTCTGATGTCTTGTTTCCTTGAACCATTTCCTAATCTGCAATTCATAGTTTTGTTTGTCAAACGCTCATGTAAGACATACCATGTCTTCTGTCCATCCGGTTGTTTCCATAAGCTTTGTGTTGTTATATTCATCAAATTTTGGAATTTCTTCCAAGAGATTAGCTAACACCAAGTGTGCTTCTTTTTTCTCCTGGGCGCTGGGTTTATTGATCTTTAACAAAAAAAAGAATTATAGAAGATCGTGTATTGAAAGACCACTGGATTACGTTTTTTGTTGTTTAACAATAAGTTTCTTAAAGGAGGCCAGACATGAAAAATTTCAAAGTTCTAGTCTTTTGATATATGACACAGTACAGTCAGAAAATATGTATGGTCACCCAACCATAACTCCATGTTGCCATACTAGCGAGAACGCGAACGTTCTTCCACGGGGCGGCACACTCCTCGTTTCATAGCCGTCTTAGCGGCAGTAGACGACAGGCGCCGTTTGGTGTAGAGGTGAACGCGCTGGTCTATCGGTCGCGCATCGCGGGTTCGATTCCCATGTGTCCGTTTTCGTTTTTTTTTGTTTTCATGCGGCGACATCATGGAATGACAGAATATCGACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTTAAAAATATTAATGCTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATGCATGATCTCGCTCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTTAAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAGGTTTTCATGTAAACCAAATATCACTGATAACTTATCGGATGTTAGTTTTAATCAGGGTTACTTACTACAGGAAACGTTGGATGACTCTGTGAATTTGCTGCAGATTCATTGTCGAGTTGAAGCGTTGTTGAAGA</canonical>
            <polymorphic>TCTGTTCGTCAGCGAATGGATGCTCAAAAAAGAGCTTTTCTAATTTCTGATGTCTTGTTTCCTTGAACCATTTCCTAATCTGCAATTCATAGTTTTGTTTGTCAAACGCTCATGTAAGACATACCATGTCTTCTGTCCATCCGGTTGTTTCCATAAGCTTTGTGTTGTTATATTCATCAAATTTTGGAATTTCTTCCAAGAGATTAGCTAACACCAAGTGTGCTTCTTTTTTCTCCTGGGCGCTGGGTTTATTGATCTTTAACAAAAAAAAGAATTATAGAAGATCGTGTATTGAAAGACCACTGGATTACGTTTTTTGTTGTTTAACAATAAGTTTCTTAAAGGAGGCCAGACATGAAAAATTTCAAAGTTCTAGTCTTTTGATATATGACACAGTACAGTCAGAAAATATGTATGGTCACCCAACCATAACTCCATGTTGCCATACTAGCGAGAACGCGAACGTTCTTCCACGGGGCGGCACACTCCTCGTTTCATARCCGTCTTAGCGGCAGTAGACGACAGGCGCCGTTTGGTGTAGAGGTGAACGCGCTGGTCTATCGGTCGCGCATCGCGGGTTCGATTCCCATGTGTCCGTTTTCGTTTTTTTTTGTTTTCATGCGGCGACATCATGGAATGACAGAATATCGACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTTAAAAATATTAATGCTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATGCATGATCTCGCTCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTTAAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAGGTTTTCATGTAAACCAAATATCACTGATAACTTATCGGATGTTAGTTTTAATCAGGGTTACTTACTACAGGAAACGTTGGATGACTCTGTGAATTTGCTGCAGATTCATTGTCGAGTTGAAGCGTTGTTGAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>448 264 230 58</canonical_bands>
                <polymorphic_bands>448 288 264</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>308 192 152 141 123 50 34</canonical_bands>
                <polymorphic_bands>460 192 141 123 50 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTCAGAAAATATGTATGGTCA</pcr_primer_p1>
		<pcr_primer_p2>ATATTCTGTCATTCCATGATGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGTCAGAAAATATGTATGGTCACCCAACCATAACTCCATGTTGCCATACTAGCGAGAACGCGAACGTTCTTCCACGGGGCGGCACACTCCTCGTTTCATAGCCGTCTTAGCGGCAGTAGACGACAGGCGCCGTTTGGTGTAGAGGTGAACGCGCTGGTCTATCGGTCGCGCATCGCGGGTTCGATTCCCATGTGTCCGTTTTCGTTTTTTTTTGTTTTCATGCGGCGACATCATGGAATGACAGAATAT</canonical_amplicon>
		<polymorphic_amplicon>CAGTCAGAAAATATGTATGGTCACCCAACCATAACTCCATGTTGCCATACTAGCGAGAACGCGAACGTTCTTCCACGGGGCGGCACACTCCTCGTTTCATARCCGTCTTAGCGGCAGTAGACGACAGGCGCCGTTTGGTGTAGAGGTGAACGCGCTGGTCTATCGGTCGCGCATCGCGGGTTCGATTCCCATGTGTCCGTTTTCGTTTTTTTTTGTTTTCATGCGGCGACATCATGGAATGACAGAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34100</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>719120</contig_pos>
        <strand></strand>
        <context>AGACGACAGG[C/A]GCCGTTTGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GGCGGCACACTCCTCGTTTCATAGCCGTCTTAGCGGCAGTAGACGACAGG</left_flank>
        <right_flank>GCCGTTTGGTGTAGAGGTGAACGCGCTGGTCTATCGGTCGCGCATCGCGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAGAGCTTTTCTAATTTCTGATGTCTTGTTTCCTTGAACCATTTCCTAATCTGCAATTCATAGTTTTGTTTGTCAAACGCTCATGTAAGACATACCATGTCTTCTGTCCATCCGGTTGTTTCCATAAGCTTTGTGTTGTTATATTCATCAAATTTTGGAATTTCTTCCAAGAGATTAGCTAACACCAAGTGTGCTTCTTTTTTCTCCTGGGCGCTGGGTTTATTGATCTTTAACAAAAAAAAGAATTATAGAAGATCGTGTATTGAAAGACCACTGGATTACGTTTTTTGTTGTTTAACAATAAGTTTCTTAAAGGAGGCCAGACATGAAAAATTTCAAAGTTCTAGTCTTTTGATATATGACACAGTACAGTCAGAAAATATGTATGGTCACCCAACCATAACTCCATGTTGCCATACTAGCGAGAACGCGAACGTTCTTCCACGGGGCGGCACACTCCTCGTTTCATAGCCGTCTTAGCGGCAGTAGACGACAGGCGCCGTTTGGTGTAGAGGTGAACGCGCTGGTCTATCGGTCGCGCATCGCGGGTTCGATTCCCATGTGTCCGTTTTCGTTTTTTTTTGTTTTCATGCGGCGACATCATGGAATGACAGAATATCGACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTTAAAAATATTAATGCTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATGCATGATCTCGCTCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTTAAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAGGTTTTCATGTAAACCAAATATCACTGATAACTTATCGGATGTTAGTTTTAATCAGGGTTACTTACTACAGGAAACGTTGGATGACTCTGTGAATTTGCTGCAGATTCATTGTCGAGTTGAAGCGTTGTTGAAGATAATGTTGGTGATGGAATAGCAGATGA</canonical>
            <polymorphic>AAAAGAGCTTTTCTAATTTCTGATGTCTTGTTTCCTTGAACCATTTCCTAATCTGCAATTCATAGTTTTGTTTGTCAAACGCTCATGTAAGACATACCATGTCTTCTGTCCATCCGGTTGTTTCCATAAGCTTTGTGTTGTTATATTCATCAAATTTTGGAATTTCTTCCAAGAGATTAGCTAACACCAAGTGTGCTTCTTTTTTCTCCTGGGCGCTGGGTTTATTGATCTTTAACAAAAAAAAGAATTATAGAAGATCGTGTATTGAAAGACCACTGGATTACGTTTTTTGTTGTTTAACAATAAGTTTCTTAAAGGAGGCCAGACATGAAAAATTTCAAAGTTCTAGTCTTTTGATATATGACACAGTACAGTCAGAAAATATGTATGGTCACCCAACCATAACTCCATGTTGCCATACTAGCGAGAACGCGAACGTTCTTCCACGGGGCGGCACACTCCTCGTTTCATAGCCGTCTTAGCGGCAGTAGACGACAGGMGCCGTTTGGTGTAGAGGTGAACGCGCTGGTCTATCGGTCGCGCATCGCGGGTTCGATTCCCATGTGTCCGTTTTCGTTTTTTTTTGTTTTCATGCGGCGACATCATGGAATGACAGAATATCGACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTTAAAAATATTAATGCTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATGCATGATCTCGCTCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTTAAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAGGTTTTCATGTAAACCAAATATCACTGATAACTTATCGGATGTTAGTTTTAATCAGGGTTACTTACTACAGGAAACGTTGGATGACTCTGTGAATTTGCTGCAGATTCATTGTCGAGTTGAAGCGTTGTTGAAGATAATGTTGGTGATGGAATAGCAGATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>297 286 215 159 24 17 2</canonical_bands>
                <polymorphic_bands>310 297 215 159 17 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCGCC</site>
                <isoschizomers>
                    <enzyme>BbeI</enzyme>
                    <enzyme>EgeI</enzyme>
                    <enzyme>EheI</enzyme>
                    <enzyme>KasI</enzyme>
                    <enzyme>Mly113I</enzyme>
                    <enzyme>NarI</enzyme>
                    <enzyme>SfoI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>498 286 216</canonical_bands>
                <polymorphic_bands>784 216</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTCAGAAAATATGTATGGTCA</pcr_primer_p1>
		<pcr_primer_p2>ATATTCTGTCATTCCATGATGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGTCAGAAAATATGTATGGTCACCCAACCATAACTCCATGTTGCCATACTAGCGAGAACGCGAACGTTCTTCCACGGGGCGGCACACTCCTCGTTTCATAGCCGTCTTAGCGGCAGTAGACGACAGGCGCCGTTTGGTGTAGAGGTGAACGCGCTGGTCTATCGGTCGCGCATCGCGGGTTCGATTCCCATGTGTCCGTTTTCGTTTTTTTTTGTTTTCATGCGGCGACATCATGGAATGACAGAATAT</canonical_amplicon>
		<polymorphic_amplicon>CAGTCAGAAAATATGTATGGTCACCCAACCATAACTCCATGTTGCCATACTAGCGAGAACGCGAACGTTCTTCCACGGGGCGGCACACTCCTCGTTTCATAGCCGTCTTAGCGGCAGTAGACGACAGGMGCCGTTTGGTGTAGAGGTGAACGCGCTGGTCTATCGGTCGCGCATCGCGGGTTCGATTCCCATGTGTCCGTTTTCGTTTTTTTTTGTTTTCATGCGGCGACATCATGGAATGACAGAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34101</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>719294</contig_pos>
        <strand></strand>
        <context>AGCGTTTCTT[T/A]AAAAAWATTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTT</left_flank>
        <right_flank>AAAAATATTAATGCTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTAGCTAACACCAAGTGTGCTTCTTTTTTCTCCTGGGCGCTGGGTTTATTGATCTTTAACAAAAAAAAGAATTATAGAAGATCGTGTATTGAAAGACCACTGGATTACGTTTTTTGTTGTTTAACAATAAGTTTCTTAAAGGAGGCCAGACATGAAAAATTTCAAAGTTCTAGTCTTTTGATATATGACACAGTACAGTCAGAAAATATGTATGGTCACCCAACCATAACTCCATGTTGCCATACTAGCGAGAACGCGAACGTTCTTCCACGGGGCGGCACACTCCTCGTTTCATAGCCGTCTTAGCGGCAGTAGACGACAGGCGCCGTTTGGTGTAGAGGTGAACGCGCTGGTCTATCGGTCGCGCATCGCGGGTTCGATTCCCATGTGTCCGTTTTCGTTTTTTTTTGTTTTCATGCGGCGACATCATGGAATGACAGAATATCGACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTTAAAAATATTAATGCTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATGCATGATCTCGCTCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTTAAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAGGTTTTCATGTAAACCAAATATCACTGATAACTTATCGGATGTTAGTTTTAATCAGGGTTACTTACTACAGGAAACGTTGGATGACTCTGTGAATTTGCTGCAGATTCATTGTCGAGTTGAAGCGTTGTTGAAGATAATGTTGGTGATGGAATAGCAGATGATACAGTTGGAACTCTTTCCGCTACAGTGTTACAAGCAGTGTTCTGGAATTTTCAAAAGTTTCAGATTGCATAAACTTTTGCGACAAGGAACCCACTGAAAAAGCGAGATGATGACTCTTGTCAGAAGTTTCTGATATTCCAAATCGAGTGACATCCGAGAAAGAAGTATTTTGT</canonical>
            <polymorphic>GATTAGCTAACACCAAGTGTGCTTCTTTTTTCTCCTGGGCGCTGGGTTTATTGATCTTTAACAAAAAAAAGAATTATAGAAGATCGTGTATTGAAAGACCACTGGATTACGTTTTTTGTTGTTTAACAATAAGTTTCTTAAAGGAGGCCAGACATGAAAAATTTCAAAGTTCTAGTCTTTTGATATATGACACAGTACAGTCAGAAAATATGTATGGTCACCCAACCATAACTCCATGTTGCCATACTAGCGAGAACGCGAACGTTCTTCCACGGGGCGGCACACTCCTCGTTTCATAGCCGTCTTAGCGGCAGTAGACGACAGGCGCCGTTTGGTGTAGAGGTGAACGCGCTGGTCTATCGGTCGCGCATCGCGGGTTCGATTCCCATGTGTCCGTTTTCGTTTTTTTTTGTTTTCATGCGGCGACATCATGGAATGACAGAATATCGACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTWAAAAATATTAATGCTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATGCATGATCTCGCTCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTTAAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAGGTTTTCATGTAAACCAAATATCACTGATAACTTATCGGATGTTAGTTTTAATCAGGGTTACTTACTACAGGAAACGTTGGATGACTCTGTGAATTTGCTGCAGATTCATTGTCGAGTTGAAGCGTTGTTGAAGATAATGTTGGTGATGGAATAGCAGATGATACAGTTGGAACTCTTTCCGCTACAGTGTTACAAGCAGTGTTCTGGAATTTTCAAAAGTTTCAGATTGCATAAACTTTTGCGACAAGGAACCCACTGAAAAAGCGAGATGATGACTCTTGTCAGAAGTTTCTGATATTCCAAATCGAGTGACATCCGAGAAAGAAGTATTTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 385 115</canonical_bands>
                <polymorphic_bands>615 385</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>361 287 106 99 65 58 15 9</canonical_bands>
                <polymorphic_bands>370 287 106 99 65 58 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGACAGAATATCGACAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTACATGAAAACCTGAAAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AATGACAGAATATCGACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTTAAAAATATTAATGCTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATGCATGATCTCGCTCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTTAAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAGGTTTTCATGTAAA</canonical_amplicon>
		<polymorphic_amplicon>AATGACAGAATATCGACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTWAAAAATATTAATGCTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATGCATGATCTCGCTCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTTAAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAGGTTTTCATGTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34102</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>719300</contig_pos>
        <strand></strand>
        <context>TCTTWAAAAA[T/A]ATTAATGCKC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTTAAAAA</left_flank>
        <right_flank>ATTAATGCTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAACACCAAGTGTGCTTCTTTTTTCTCCTGGGCGCTGGGTTTATTGATCTTTAACAAAAAAAAGAATTATAGAAGATCGTGTATTGAAAGACCACTGGATTACGTTTTTTGTTGTTTAACAATAAGTTTCTTAAAGGAGGCCAGACATGAAAAATTTCAAAGTTCTAGTCTTTTGATATATGACACAGTACAGTCAGAAAATATGTATGGTCACCCAACCATAACTCCATGTTGCCATACTAGCGAGAACGCGAACGTTCTTCCACGGGGCGGCACACTCCTCGTTTCATAGCCGTCTTAGCGGCAGTAGACGACAGGCGCCGTTTGGTGTAGAGGTGAACGCGCTGGTCTATCGGTCGCGCATCGCGGGTTCGATTCCCATGTGTCCGTTTTCGTTTTTTTTTGTTTTCATGCGGCGACATCATGGAATGACAGAATATCGACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTTAAAAATATTAATGCTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATGCATGATCTCGCTCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTTAAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAGGTTTTCATGTAAACCAAATATCACTGATAACTTATCGGATGTTAGTTTTAATCAGGGTTACTTACTACAGGAAACGTTGGATGACTCTGTGAATTTGCTGCAGATTCATTGTCGAGTTGAAGCGTTGTTGAAGATAATGTTGGTGATGGAATAGCAGATGATACAGTTGGAACTCTTTCCGCTACAGTGTTACAAGCAGTGTTCTGGAATTTTCAAAAGTTTCAGATTGCATAAACTTTTGCGACAAGGAACCCACTGAAAAAGCGAGATGATGACTCTTGTCAGAAGTTTCTGATATTCCAAATCGAGTGACATCCGAGAAAGAAGTATTTTGTGGAGTT</canonical>
            <polymorphic>CTAACACCAAGTGTGCTTCTTTTTTCTCCTGGGCGCTGGGTTTATTGATCTTTAACAAAAAAAAGAATTATAGAAGATCGTGTATTGAAAGACCACTGGATTACGTTTTTTGTTGTTTAACAATAAGTTTCTTAAAGGAGGCCAGACATGAAAAATTTCAAAGTTCTAGTCTTTTGATATATGACACAGTACAGTCAGAAAATATGTATGGTCACCCAACCATAACTCCATGTTGCCATACTAGCGAGAACGCGAACGTTCTTCCACGGGGCGGCACACTCCTCGTTTCATAGCCGTCTTAGCGGCAGTAGACGACAGGCGCCGTTTGGTGTAGAGGTGAACGCGCTGGTCTATCGGTCGCGCATCGCGGGTTCGATTCCCATGTGTCCGTTTTCGTTTTTTTTTGTTTTCATGCGGCGACATCATGGAATGACAGAATATCGACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTTAAAAAWATTAATGCTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATGCATGATCTCGCTCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTTAAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAGGTTTTCATGTAAACCAAATATCACTGATAACTTATCGGATGTTAGTTTTAATCAGGGTTACTTACTACAGGAAACGTTGGATGACTCTGTGAATTTGCTGCAGATTCATTGTCGAGTTGAAGCGTTGTTGAAGATAATGTTGGTGATGGAATAGCAGATGATACAGTTGGAACTCTTTCCGCTACAGTGTTACAAGCAGTGTTCTGGAATTTTCAAAAGTTTCAGATTGCATAAACTTTTGCGACAAGGAACCCACTGAAAAAGCGAGATGATGACTCTTGTCAGAAGTTTCTGATATTCCAAATCGAGTGACATCCGAGAAAGAAGTATTTTGTGGAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGACAGAATATCGACAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTACATGAAAACCTGAAAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AATGACAGAATATCGACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTTAAAAATATTAATGCTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATGCATGATCTCGCTCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTTAAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAGGTTTTCATGTAAA</canonical_amplicon>
		<polymorphic_amplicon>AATGACAGAATATCGACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTTAAAAAWATTAATGCTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATGCATGATCTCGCTCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTTAAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAGGTTTTCATGTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34103</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>719309</contig_pos>
        <strand></strand>
        <context>AWATTAATGC[T/G]CGTCAAGTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTTAAAAATATTAATGC</left_flank>
        <right_flank>CGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATGC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGTGCTTCTTTTTTCTCCTGGGCGCTGGGTTTATTGATCTTTAACAAAAAAAAGAATTATAGAAGATCGTGTATTGAAAGACCACTGGATTACGTTTTTTGTTGTTTAACAATAAGTTTCTTAAAGGAGGCCAGACATGAAAAATTTCAAAGTTCTAGTCTTTTGATATATGACACAGTACAGTCAGAAAATATGTATGGTCACCCAACCATAACTCCATGTTGCCATACTAGCGAGAACGCGAACGTTCTTCCACGGGGCGGCACACTCCTCGTTTCATAGCCGTCTTAGCGGCAGTAGACGACAGGCGCCGTTTGGTGTAGAGGTGAACGCGCTGGTCTATCGGTCGCGCATCGCGGGTTCGATTCCCATGTGTCCGTTTTCGTTTTTTTTTGTTTTCATGCGGCGACATCATGGAATGACAGAATATCGACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTTAAAAATATTAATGCTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATGCATGATCTCGCTCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTTAAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAGGTTTTCATGTAAACCAAATATCACTGATAACTTATCGGATGTTAGTTTTAATCAGGGTTACTTACTACAGGAAACGTTGGATGACTCTGTGAATTTGCTGCAGATTCATTGTCGAGTTGAAGCGTTGTTGAAGATAATGTTGGTGATGGAATAGCAGATGATACAGTTGGAACTCTTTCCGCTACAGTGTTACAAGCAGTGTTCTGGAATTTTCAAAAGTTTCAGATTGCATAAACTTTTGCGACAAGGAACCCACTGAAAAAGCGAGATGATGACTCTTGTCAGAAGTTTCTGATATTCCAAATCGAGTGACATCCGAGAAAGAAGTATTTTGTGGAGTTTCACTTTGC</canonical>
            <polymorphic>AGTGTGCTTCTTTTTTCTCCTGGGCGCTGGGTTTATTGATCTTTAACAAAAAAAAGAATTATAGAAGATCGTGTATTGAAAGACCACTGGATTACGTTTTTTGTTGTTTAACAATAAGTTTCTTAAAGGAGGCCAGACATGAAAAATTTCAAAGTTCTAGTCTTTTGATATATGACACAGTACAGTCAGAAAATATGTATGGTCACCCAACCATAACTCCATGTTGCCATACTAGCGAGAACGCGAACGTTCTTCCACGGGGCGGCACACTCCTCGTTTCATAGCCGTCTTAGCGGCAGTAGACGACAGGCGCCGTTTGGTGTAGAGGTGAACGCGCTGGTCTATCGGTCGCGCATCGCGGGTTCGATTCCCATGTGTCCGTTTTCGTTTTTTTTTGTTTTCATGCGGCGACATCATGGAATGACAGAATATCGACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTTAAAAATATTAATGCKCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATGCATGATCTCGCTCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTTAAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAGGTTTTCATGTAAACCAAATATCACTGATAACTTATCGGATGTTAGTTTTAATCAGGGTTACTTACTACAGGAAACGTTGGATGACTCTGTGAATTTGCTGCAGATTCATTGTCGAGTTGAAGCGTTGTTGAAGATAATGTTGGTGATGGAATAGCAGATGATACAGTTGGAACTCTTTCCGCTACAGTGTTACAAGCAGTGTTCTGGAATTTTCAAAAGTTTCAGATTGCATAAACTTTTGCGACAAGGAACCCACTGAAAAAGCGAGATGATGACTCTTGTCAGAAGTTTCTGATATTCCAAATCGAGTGACATCCGAGAAAGAAGTATTTTGTGGAGTTTCACTTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGACAGAATATCGACAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTACATGAAAACCTGAAAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AATGACAGAATATCGACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTTAAAAATATTAATGCTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATGCATGATCTCGCTCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTTAAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAGGTTTTCATGTAAA</canonical_amplicon>
		<polymorphic_amplicon>AATGACAGAATATCGACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTTAAAAATATTAATGCKCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATGCATGATCTCGCTCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTTAAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAGGTTTTCATGTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34104</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>719358</contig_pos>
        <strand></strand>
        <context>CCGTCAGAAT[G/T]CATGATCTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAAT</left_flank>
        <right_flank>CATGATCTCGCTCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAGAATTATAGAAGATCGTGTATTGAAAGACCACTGGATTACGTTTTTTGTTGTTTAACAATAAGTTTCTTAAAGGAGGCCAGACATGAAAAATTTCAAAGTTCTAGTCTTTTGATATATGACACAGTACAGTCAGAAAATATGTATGGTCACCCAACCATAACTCCATGTTGCCATACTAGCGAGAACGCGAACGTTCTTCCACGGGGCGGCACACTCCTCGTTTCATAGCCGTCTTAGCGGCAGTAGACGACAGGCGCCGTTTGGTGTAGAGGTGAACGCGCTGGTCTATCGGTCGCGCATCGCGGGTTCGATTCCCATGTGTCCGTTTTCGTTTTTTTTTGTTTTCATGCGGCGACATCATGGAATGACAGAATATCGACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTTAAAAATATTAATGCTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATGCATGATCTCGCTCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTTAAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAGGTTTTCATGTAAACCAAATATCACTGATAACTTATCGGATGTTAGTTTTAATCAGGGTTACTTACTACAGGAAACGTTGGATGACTCTGTGAATTTGCTGCAGATTCATTGTCGAGTTGAAGCGTTGTTGAAGATAATGTTGGTGATGGAATAGCAGATGATACAGTTGGAACTCTTTCCGCTACAGTGTTACAAGCAGTGTTCTGGAATTTTCAAAAGTTTCAGATTGCATAAACTTTTGCGACAAGGAACCCACTGAAAAAGCGAGATGATGACTCTTGTCAGAAGTTTCTGATATTCCAAATCGAGTGACATCCGAGAAAGAAGTATTTTGTGGAGTTTCACTTTGCTGTATTGGAGAAAATATTTCAGAAATCGAGGGAAGATTCTGCTGTGCAA</canonical>
            <polymorphic>AAAAAAGAATTATAGAAGATCGTGTATTGAAAGACCACTGGATTACGTTTTTTGTTGTTTAACAATAAGTTTCTTAAAGGAGGCCAGACATGAAAAATTTCAAAGTTCTAGTCTTTTGATATATGACACAGTACAGTCAGAAAATATGTATGGTCACCCAACCATAACTCCATGTTGCCATACTAGCGAGAACGCGAACGTTCTTCCACGGGGCGGCACACTCCTCGTTTCATAGCCGTCTTAGCGGCAGTAGACGACAGGCGCCGTTTGGTGTAGAGGTGAACGCGCTGGTCTATCGGTCGCGCATCGCGGGTTCGATTCCCATGTGTCCGTTTTCGTTTTTTTTTGTTTTCATGCGGCGACATCATGGAATGACAGAATATCGACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTTAAAAATATTAATGCTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATKCATGATCTCGCTCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTTAAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAGGTTTTCATGTAAACCAAATATCACTGATAACTTATCGGATGTTAGTTTTAATCAGGGTTACTTACTACAGGAAACGTTGGATGACTCTGTGAATTTGCTGCAGATTCATTGTCGAGTTGAAGCGTTGTTGAAGATAATGTTGGTGATGGAATAGCAGATGATACAGTTGGAACTCTTTCCGCTACAGTGTTACAAGCAGTGTTCTGGAATTTTCAAAAGTTTCAGATTGCATAAACTTTTGCGACAAGGAACCCACTGAAAAAGCGAGATGATGACTCTTGTCAGAAGTTTCTGATATTCCAAATCGAGTGACATCCGAGAAAGAAGTATTTTGTGGAGTTTCACTTTGCTGTATTGGAGAAAATATTTCAGAAATCGAGGGAAGATTCTGCTGTGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATGCAT</site>
                <isoschizomers>
                    <enzyme>BfrBI</enzyme>
                    <enzyme>EcoT22I</enzyme>
                    <enzyme>Mph1103I</enzyme>
                    <enzyme>NsiI</enzyme>
                    <enzyme>Ppu10I</enzyme>
                    <enzyme>Zsp2I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 201 167 129 3</canonical_bands>
                <polymorphic_bands>701 167 129 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGACAGAATATCGACAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTACATGAAAACCTGAAAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AATGACAGAATATCGACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTTAAAAATATTAATGCTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATGCATGATCTCGCTCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTTAAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAGGTTTTCATGTAAA</canonical_amplicon>
		<polymorphic_amplicon>AATGACAGAATATCGACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTTAAAAATATTAATGCTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATKCATGATCTCGCTCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTTAAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAGGTTTTCATGTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34105</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>719370</contig_pos>
        <strand></strand>
        <context>ATGATCTCGC[T/C]CCAAGAAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATGCATGATCTCGC</left_flank>
        <right_flank>CCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTTAAAGCGTTTCG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAAGATCGTGTATTGAAAGACCACTGGATTACGTTTTTTGTTGTTTAACAATAAGTTTCTTAAAGGAGGCCAGACATGAAAAATTTCAAAGTTCTAGTCTTTTGATATATGACACAGTACAGTCAGAAAATATGTATGGTCACCCAACCATAACTCCATGTTGCCATACTAGCGAGAACGCGAACGTTCTTCCACGGGGCGGCACACTCCTCGTTTCATAGCCGTCTTAGCGGCAGTAGACGACAGGCGCCGTTTGGTGTAGAGGTGAACGCGCTGGTCTATCGGTCGCGCATCGCGGGTTCGATTCCCATGTGTCCGTTTTCGTTTTTTTTTGTTTTCATGCGGCGACATCATGGAATGACAGAATATCGACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTTAAAAATATTAATGCTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATGCATGATCTCGCTCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTTAAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAGGTTTTCATGTAAACCAAATATCACTGATAACTTATCGGATGTTAGTTTTAATCAGGGTTACTTACTACAGGAAACGTTGGATGACTCTGTGAATTTGCTGCAGATTCATTGTCGAGTTGAAGCGTTGTTGAAGATAATGTTGGTGATGGAATAGCAGATGATACAGTTGGAACTCTTTCCGCTACAGTGTTACAAGCAGTGTTCTGGAATTTTCAAAAGTTTCAGATTGCATAAACTTTTGCGACAAGGAACCCACTGAAAAAGCGAGATGATGACTCTTGTCAGAAGTTTCTGATATTCCAAATCGAGTGACATCCGAGAAAGAAGTATTTTGTGGAGTTTCACTTTGCTGTATTGGAGAAAATATTTCAGAAATCGAGGGAAGATTCTGCTGTGCAATCTGGAATTAAT</canonical>
            <polymorphic>TAGAAGATCGTGTATTGAAAGACCACTGGATTACGTTTTTTGTTGTTTAACAATAAGTTTCTTAAAGGAGGCCAGACATGAAAAATTTCAAAGTTCTAGTCTTTTGATATATGACACAGTACAGTCAGAAAATATGTATGGTCACCCAACCATAACTCCATGTTGCCATACTAGCGAGAACGCGAACGTTCTTCCACGGGGCGGCACACTCCTCGTTTCATAGCCGTCTTAGCGGCAGTAGACGACAGGCGCCGTTTGGTGTAGAGGTGAACGCGCTGGTCTATCGGTCGCGCATCGCGGGTTCGATTCCCATGTGTCCGTTTTCGTTTTTTTTTGTTTTCATGCGGCGACATCATGGAATGACAGAATATCGACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTTAAAAATATTAATGCTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATGCATGATCTCGCYCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTTAAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAGGTTTTCATGTAAACCAAATATCACTGATAACTTATCGGATGTTAGTTTTAATCAGGGTTACTTACTACAGGAAACGTTGGATGACTCTGTGAATTTGCTGCAGATTCATTGTCGAGTTGAAGCGTTGTTGAAGATAATGTTGGTGATGGAATAGCAGATGATACAGTTGGAACTCTTTCCGCTACAGTGTTACAAGCAGTGTTCTGGAATTTTCAAAAGTTTCAGATTGCATAAACTTTTGCGACAAGGAACCCACTGAAAAAGCGAGATGATGACTCTTGTCAGAAGTTTCTGATATTCCAAATCGAGTGACATCCGAGAAAGAAGTATTTTGTGGAGTTTCACTTTGCTGTATTGGAGAAAATATTTCAGAAATCGAGGGAAGATTCTGCTGTGCAATCTGGAATTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGACAGAATATCGACAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTACATGAAAACCTGAAAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AATGACAGAATATCGACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTTAAAAATATTAATGCTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATGCATGATCTCGCTCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTTAAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAGGTTTTCATGTAAA</canonical_amplicon>
		<polymorphic_amplicon>AATGACAGAATATCGACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTTAAAAATATTAATGCTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATGCATGATCTCGCYCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTTAAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAGGTTTTCATGTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34106</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>719409</contig_pos>
        <strand></strand>
        <context>TGGCCTCCTT[T/A]AAAGCGTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CATGATCTCGCTCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTT</left_flank>
        <right_flank>AAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTTGTTTAACAATAAGTTTCTTAAAGGAGGCCAGACATGAAAAATTTCAAAGTTCTAGTCTTTTGATATATGACACAGTACAGTCAGAAAATATGTATGGTCACCCAACCATAACTCCATGTTGCCATACTAGCGAGAACGCGAACGTTCTTCCACGGGGCGGCACACTCCTCGTTTCATAGCCGTCTTAGCGGCAGTAGACGACAGGCGCCGTTTGGTGTAGAGGTGAACGCGCTGGTCTATCGGTCGCGCATCGCGGGTTCGATTCCCATGTGTCCGTTTTCGTTTTTTTTTGTTTTCATGCGGCGACATCATGGAATGACAGAATATCGACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTTAAAAATATTAATGCTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATGCATGATCTCGCTCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTTAAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAGGTTTTCATGTAAACCAAATATCACTGATAACTTATCGGATGTTAGTTTTAATCAGGGTTACTTACTACAGGAAACGTTGGATGACTCTGTGAATTTGCTGCAGATTCATTGTCGAGTTGAAGCGTTGTTGAAGATAATGTTGGTGATGGAATAGCAGATGATACAGTTGGAACTCTTTCCGCTACAGTGTTACAAGCAGTGTTCTGGAATTTTCAAAAGTTTCAGATTGCATAAACTTTTGCGACAAGGAACCCACTGAAAAAGCGAGATGATGACTCTTGTCAGAAGTTTCTGATATTCCAAATCGAGTGACATCCGAGAAAGAAGTATTTTGTGGAGTTTCACTTTGCTGTATTGGAGAAAATATTTCAGAAATCGAGGGAAGATTCTGCTGTGCAATCTGGAATTAATGGGAATAAAATTTTTCTGGAATTTTGTTGAAATAACAGA</canonical>
            <polymorphic>TTGTTGTTTAACAATAAGTTTCTTAAAGGAGGCCAGACATGAAAAATTTCAAAGTTCTAGTCTTTTGATATATGACACAGTACAGTCAGAAAATATGTATGGTCACCCAACCATAACTCCATGTTGCCATACTAGCGAGAACGCGAACGTTCTTCCACGGGGCGGCACACTCCTCGTTTCATAGCCGTCTTAGCGGCAGTAGACGACAGGCGCCGTTTGGTGTAGAGGTGAACGCGCTGGTCTATCGGTCGCGCATCGCGGGTTCGATTCCCATGTGTCCGTTTTCGTTTTTTTTTGTTTTCATGCGGCGACATCATGGAATGACAGAATATCGACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTTAAAAATATTAATGCTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATGCATGATCTCGCTCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTWAAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAGGTTTTCATGTAAACCAAATATCACTGATAACTTATCGGATGTTAGTTTTAATCAGGGTTACTTACTACAGGAAACGTTGGATGACTCTGTGAATTTGCTGCAGATTCATTGTCGAGTTGAAGCGTTGTTGAAGATAATGTTGGTGATGGAATAGCAGATGATACAGTTGGAACTCTTTCCGCTACAGTGTTACAAGCAGTGTTCTGGAATTTTCAAAAGTTTCAGATTGCATAAACTTTTGCGACAAGGAACCCACTGAAAAAGCGAGATGATGACTCTTGTCAGAAGTTTCTGATATTCCAAATCGAGTGACATCCGAGAAAGAAGTATTTTGTGGAGTTTCACTTTGCTGTATTGGAGAAAATATTTCAGAAATCGAGGGAAGATTCTGCTGTGCAATCTGGAATTAATGGGAATAAAATTTTTCTGGAATTTTGTTGAAATAACAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 385 115</canonical_bands>
                <polymorphic_bands>615 385</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>361 359 106 99 43 15 9 8</canonical_bands>
                <polymorphic_bands>361 359 205 43 15 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGACAGAATATCGACAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTACATGAAAACCTGAAAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AATGACAGAATATCGACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTTAAAAATATTAATGCTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATGCATGATCTCGCTCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTTAAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAGGTTTTCATGTAAA</canonical_amplicon>
		<polymorphic_amplicon>AATGACAGAATATCGACAAAAAGTCTGGAATTATTGCCTAACATTGAAGAAATCAAGCGTTTCTTTAAAAATATTAATGCTCGTCAAGTAGCGCGCATTGGTCGCAATCGCACGACTTTCCGTCAGAATGCATGATCTCGCTCCAAGAAAACCCCGTAGACTTTCGTGTCTGGCCTCCTTWAAAGCGTTTCGAAAAGAAGACACCATCTTCTACATAATCTGTTCTTTCAGGTTTTCATGTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34107</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>781483</contig_pos>
        <strand>+</strand>
        <context>ATATCCTTCT[A/G]TCTTTTTGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCTGCTCTTCCTGCTCGATTTCATACAGCTGTCTTTTTGATATCCTTCT</left_flank>
        <right_flank>TCTTTTTGACATCCTTTCTTCCTTTCTTCATTAAAGGAGGGGAGACATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCATGGGAACTCCATCAAAACCGACCTTTCCAAATAAAAAAAAGCCCACCTGCCAATTTCAAATTGATACAACTTATGTTACACGTTCCTCAATGTTTCGTGTTTCACCCAGATAATAGCGATTTTTTTTTATTGTTAGTACCGTAATTTTTAGAAATATTAGATTGTTATTTCCGTCAAAATTCCTCCCTATTTTTTGTTCCTTGTCGAGAAAGACATGACTTCCTACGTAAGCGAGAGTTTTGTGCGACCATTGAGCTCAACACTTATGCTGTCACTTTGGATCATTCGGGGGAATTCCGGAAATGAAAAATACTTACGTAAATTAAAAAGATTTAGAGGTGTAAAGATTTAGAGGTGCAAAAGAAAAAATGACAAGACTATAATTATCGTAAATCCTATAATAGATAGCTTCTTTGGTGTTGCATTTGCTCTTTTAATACAATTGTCTGCTCTTCCTGCTCGATTTCATACAGCTGTCTTTTTGATATCCTTCTGTCTTTTTGACATCCTTTCTTCCTTTCTTCATTAAAGGAGGGGAGACATCAAAATTTTCAACATTTTTATTTTTCTCAAAAGAGGTAACTCTAGAGTATAAGTATAGTTTTGTACTTAAAAACCAGAAAAAAACACTACACCGACGAAAAAATGCTCTTTTTTTCTGACCGTAACTTCCTCACTCGTTTGCTGCAGCGGCGTCGCTTCATAAAACAAATCAACGCGGTCGTTGCCTCTCACACGCGTGGTGTAGTGGATACGCTCAAGGTTAGCATTCAGAAGGTCGGAGGTTCAATCCCCGCTCGCTGATGGTTCCCCTTTTTTCTCAGCTTGTCTCTTTTGGATTCAACTTTTGAAACTCAAAGTTTTCGGAATCGAACTTTTCGGGACGTCAGCGTGCCGTCAAAGCCTAGCTACGAGATAAGAAACACTGTTGAAAATAGTATATGCAGTTTATTATGTCAACAAATAAATTATGCAAAAAATACCTTAAATATTTA</canonical>
            <polymorphic>AAGCATGGGAACTCCATCAAAACCGACCTTTCCAAATAAAAAAAAGCCCACCTGCCAATTTCAAATTGATACAACTTATGTTACACGTTCCTCAATGTTTCGTGTTTCACCCAGATAATAGCGATTTTTTTTTATTGTTAGTACCGTAATTTTTAGAAATATTAGATTGTTATTTCCGTCAAAATTCCTCCCTATTTTTTGTTCCTTGTCGAGAAAGACATGACTTCCTACGTAAGCGAGAGTTTTGTGCGACCATTGAGCTCAACACTTATGCTGTCACTTTGGATCATTCGGGGGAATTCCGGAAATGAAAAATACTTACGTAAATTAAAAAGATTTAGAGGTGTAAAGATTTAGAGGTGCAAAAGAAAAAATGACAAGACTATAATTATCGTAAATCCTATAATAGATAGCTTCTTTGGTGTTGCATTTGCTCTTTTAATACAATTGTCTGCTCTTCCTGCTCGATTTCATACAGCTGTCTTTTTGATATCCTTCTRTCTTTTTGACATCCTTTCTTCCTTTCTTCATTAAAGGAGGGGAGACATCAAAATTTTCAACATTTTTATTTTTCTCAAAAGAGGTAACTCTAGAGTATAAGTATAGTTTTGTACTTAAAAACCAGAAAAAAACACTACACCGACGAAAAAATGCTCTTTTTTTCTGACCGTAACTTCCTCACTCGTTTGCTGCAGCGGCGTCGCTTCATAAAACAAATCAACGCGGTCGTTGCCTCTCACACGCGTGGTGTAGTGGATACGCTCAAGGTTAGCATTCAGAAGGTCGGAGGTTCAATCCCCGCTCGCTGATGGTTCCCCTTTTTTCTCAGCTTGTCTCTTTTGGATTCAACTTTTGAAACTCAAAGTTTTCGGAATCGAACTTTTCGGGACGTCAGCGTGCCGTCAAAGCCTAGCTACGAGATAAGAAACACTGTTGAAAATAGTATATGCAGTTTATTATGTCAACAAATAAATTATGCAAAAAATACCTTAAATATTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAGATTTAGAGGTGCAAAAGA</pcr_primer_p1>
		<pcr_primer_p2>CTCTAGAGTTACCTCTTTTGAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAAAGATTTAGAGGTGCAAAAGAAAAAATGACAAGACTATAATTATCGTAAATCCTATAATAGATAGCTTCTTTGGTGTTGCATTTGCTCTTTTAATACAATTGTCTGCTCTTCCTGCTCGATTTCATACAGCTGTCTTTTTGATATCCTTCTGTCTTTTTGACATCCTTTCTTCCTTTCTTCATTAAAGGAGGGGAGACATCAAAATTTTCAACATTTTTATTTTTCTCAAAAGAGGTAACTCTAGAG</canonical_amplicon>
		<polymorphic_amplicon>TAAAGATTTAGAGGTGCAAAAGAAAAAATGACAAGACTATAATTATCGTAAATCCTATAATAGATAGCTTCTTTGGTGTTGCATTTGCTCTTTTAATACAATTGTCTGCTCTTCCTGCTCGATTTCATACAGCTGTCTTTTTGATATCCTTCTRTCTTTTTGACATCCTTTCTTCCTTTCTTCATTAAAGGAGGGGAGACATCAAAATTTTCAACATTTTTATTTTTCTCAAAAGAGGTAACTCTAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34108</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>783147</contig_pos>
        <strand>+</strand>
        <context>TAATTGCTCA[C/G]AATTTTTCGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCAGTAACTCTGAATTAAGTTTGGGGTCCTTAGGAATAAATAATTGCTCA</left_flank>
        <right_flank>AATTTTTCGACTCTCTAGGACTCCACGTCACTCCAGTCGTCGGCAAAGCG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGTTTAGTTGCTCTTTATATTACGAAAGACCCCGAGATATAAAAACCTGACTATTCGTATTCACCTGCCCACTATCCCATTTTTTCTGTACCACTTTTGAAGTAGACACCTCATGATGGCTCCTAGTGACTGATTCTCCGCCTTGTTTTTCCTGTACCATCTAGTAACGGGTGAATCATCATCCGGGATGAGTCATATCCTCAGAAACAGCCACCAATCATTTGACAACATTATTATCGCTGTCGTAAAAAAAAGGAACTTGAGACGCAGACTGAATTTCTCTGCGTCTCCACCTTATGTGTGCTATTTAGGCTTGCCGCTTCGAGAAACCTACCGTATTCAGACTGCAAAAAATACTATCTATTGTTCATTTTTTCAGACAGCAATAATACCAAGCCGTGTCAGCATCTTGTGAATCGTTTGGTTTAAGACATGTTTTATGTTTAAATCAGTAACTCTGAATTAAGTTTGGGGTCCTTAGGAATAAATAATTGCTCACAATTTTTCGACTCTCTAGGACTCCACGTCACTCCAGTCGTCGGCAAAGCGTCAAACGATTCCGTTGACTTTTTATTTCGCCGGCACACTAATCTCCCTTGAGCAAACATTGCTAACAATGGTCCCTGTTCATAAAATCTACGCAATGACACAGCGCAGGTGCCTTCTGTCTGTGCTCTGTTTTGGTGTTACTGTGCCAGATGACTCGACGAACACATGAGTTGCGCAACAGGGCGATATGCACATTTAATGGCCGGAGTCGAGGGAGGATTAGCACTATTGATCCGATATATTTTTGGCTGTAGCGAAAACAATGTCCAAATGTGACCATCGTAGTTGAGATGATAACAACGCCTAATGATAAGTGTTGATAATACAGAACTTGGAATGCGTTCGTGATGATTGTCGGACCTCAAAAATTGACATTTAGATTTTAACTAAGATTATTGCTTATCGTTGGTGCGGATGTTCTAAGCGGATATTACCGTTTAGGCTGTCTGG</canonical>
            <polymorphic>TCGTTTAGTTGCTCTTTATATTACGAAAGACCCCGAGATATAAAAACCTGACTATTCGTATTCACCTGCCCACTATCCCATTTTTTCTGTACCACTTTTGAAGTAGACACCTCATGATGGCTCCTAGTGACTGATTCTCCGCCTTGTTTTTCCTGTACCATCTAGTAACGGGTGAATCATCATCCGGGATGAGTCATATCCTCAGAAACAGCCACCAATCATTTGACAACATTATTATCGCTGTCGTAAAAAAAAGGAACTTGAGACGCAGACTGAATTTCTCTGCGTCTCCACCTTATGTGTGCTATTTAGGCTTGCCGCTTCGAGAAACCTACCGTATTCAGACTGCAAAAAATACTATCTATTGTTCATTTTTTCAGACAGCAATAATACCAAGCCGTGTCAGCATCTTGTGAATCGTTTGGTTTAAGACATGTTTTATGTTTAAATCAGTAACTCTGAATTAAGTTTGGGGTCCTTAGGAATAAATAATTGCTCASAATTTTTCGACTCTCTAGGACTCCACGTCACTCCAGTCGTCGGCAAAGCGTCAAACGATTCCGTTGACTTTTTATTTCGCCGGCACACTAATCTCCCTTGAGCAAACATTGCTAACAATGGTCCCTGTTCATAAAATCTACGCAATGACACAGCGCAGGTGCCTTCTGTCTGTGCTCTGTTTTGGTGTTACTGTGCCAGATGACTCGACGAACACATGAGTTGCGCAACAGGGCGATATGCACATTTAATGGCCGGAGTCGAGGGAGGATTAGCACTATTGATCCGATATATTTTTGGCTGTAGCGAAAACAATGTCCAAATGTGACCATCGTAGTTGAGATGATAACAACGCCTAATGATAAGTGTTGATAATACAGAACTTGGAATGCGTTCGTGATGATTGTCGGACCTCAAAAATTGACATTTAGATTTTAACTAAGATTATTGCTTATCGTTGGTGCGGATGTTCTAAGCGGATATTACCGTTTAGGCTGTCTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>98 84 79 64 64 63 55 50 45 41 40 39 33 31 28 26 22 20 19 15 13 13 13 11 9 8 8 5 2 2</canonical_bands>
                <polymorphic_bands>110 98 79 64 64 63 55 50 45 41 40 39 33 31 28 22 20 19 15 13 13 13 11 9 8 8 5 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTGTGAATCGTTTGGTTTA</pcr_primer_p1>
		<pcr_primer_p2>CTGTGTCATTGCGTAGATTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TCTTGTGAATCGTTTGGTTTAAGACATGTTTTATGTTTAAATCAGTAACTCTGAATTAAGTTTGGGGTCCTTAGGAATAAATAATTGCTCACAATTTTTCGACTCTCTAGGACTCCACGTCACTCCAGTCGTCGGCAAAGCGTCAAACGATTCCGTTGACTTTTTATTTCGCCGGCACACTAATCTCCCTTGAGCAAACATTGCTAACAATGGTCCCTGTTCATAAAATCTACGCAATGACACAG</canonical_amplicon>
		<polymorphic_amplicon>TCTTGTGAATCGTTTGGTTTAAGACATGTTTTATGTTTAAATCAGTAACTCTGAATTAAGTTTGGGGTCCTTAGGAATAAATAATTGCTCASAATTTTTCGACTCTCTAGGACTCCACGTCACTCCAGTCGTCGGCAAAGCGTCAAACGATTCCGTTGACTTTTTATTTCGCCGGCACACTAATCTCCCTTGAGCAAACATTGCTAACAATGGTCCCTGTTCATAAAATCTACGCAATGACACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34109</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>783183</contig_pos>
        <strand>+</strand>
        <context>CGTCACTCCA[A/G]TCGTCGGCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAATAATTGCTCACAATTTTTCGACTCTCTAGGACTCCACGTCACTCCA</left_flank>
        <right_flank>TCGTCGGCAAAGCGTCAAACGATTCCGTTGACTTTTTATTTCGCCGGCAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATATAAAAACCTGACTATTCGTATTCACCTGCCCACTATCCCATTTTTTCTGTACCACTTTTGAAGTAGACACCTCATGATGGCTCCTAGTGACTGATTCTCCGCCTTGTTTTTCCTGTACCATCTAGTAACGGGTGAATCATCATCCGGGATGAGTCATATCCTCAGAAACAGCCACCAATCATTTGACAACATTATTATCGCTGTCGTAAAAAAAAGGAACTTGAGACGCAGACTGAATTTCTCTGCGTCTCCACCTTATGTGTGCTATTTAGGCTTGCCGCTTCGAGAAACCTACCGTATTCAGACTGCAAAAAATACTATCTATTGTTCATTTTTTCAGACAGCAATAATACCAAGCCGTGTCAGCATCTTGTGAATCGTTTGGTTTAAGACATGTTTTATGTTTAAATCAGTAACTCTGAATTAAGTTTGGGGTCCTTAGGAATAAATAATTGCTCACAATTTTTCGACTCTCTAGGACTCCACGTCACTCCAGTCGTCGGCAAAGCGTCAAACGATTCCGTTGACTTTTTATTTCGCCGGCACACTAATCTCCCTTGAGCAAACATTGCTAACAATGGTCCCTGTTCATAAAATCTACGCAATGACACAGCGCAGGTGCCTTCTGTCTGTGCTCTGTTTTGGTGTTACTGTGCCAGATGACTCGACGAACACATGAGTTGCGCAACAGGGCGATATGCACATTTAATGGCCGGAGTCGAGGGAGGATTAGCACTATTGATCCGATATATTTTTGGCTGTAGCGAAAACAATGTCCAAATGTGACCATCGTAGTTGAGATGATAACAACGCCTAATGATAAGTGTTGATAATACAGAACTTGGAATGCGTTCGTGATGATTGTCGGACCTCAAAAATTGACATTTAGATTTTAACTAAGATTATTGCTTATCGTTGGTGCGGATGTTCTAAGCGGATATTACCGTTTAGGCTGTCTGGACTTGATATCAAGTAGCGTTTGTTGCATGATGCCCA</canonical>
            <polymorphic>GATATAAAAACCTGACTATTCGTATTCACCTGCCCACTATCCCATTTTTTCTGTACCACTTTTGAAGTAGACACCTCATGATGGCTCCTAGTGACTGATTCTCCGCCTTGTTTTTCCTGTACCATCTAGTAACGGGTGAATCATCATCCGGGATGAGTCATATCCTCAGAAACAGCCACCAATCATTTGACAACATTATTATCGCTGTCGTAAAAAAAAGGAACTTGAGACGCAGACTGAATTTCTCTGCGTCTCCACCTTATGTGTGCTATTTAGGCTTGCCGCTTCGAGAAACCTACCGTATTCAGACTGCAAAAAATACTATCTATTGTTCATTTTTTCAGACAGCAATAATACCAAGCCGTGTCAGCATCTTGTGAATCGTTTGGTTTAAGACATGTTTTATGTTTAAATCAGTAACTCTGAATTAAGTTTGGGGTCCTTAGGAATAAATAATTGCTCACAATTTTTCGACTCTCTAGGACTCCACGTCACTCCARTCGTCGGCAAAGCGTCAAACGATTCCGTTGACTTTTTATTTCGCCGGCACACTAATCTCCCTTGAGCAAACATTGCTAACAATGGTCCCTGTTCATAAAATCTACGCAATGACACAGCGCAGGTGCCTTCTGTCTGTGCTCTGTTTTGGTGTTACTGTGCCAGATGACTCGACGAACACATGAGTTGCGCAACAGGGCGATATGCACATTTAATGGCCGGAGTCGAGGGAGGATTAGCACTATTGATCCGATATATTTTTGGCTGTAGCGAAAACAATGTCCAAATGTGACCATCGTAGTTGAGATGATAACAACGCCTAATGATAAGTGTTGATAATACAGAACTTGGAATGCGTTCGTGATGATTGTCGGACCTCAAAAATTGACATTTAGATTTTAACTAAGATTATTGCTTATCGTTGGTGCGGATGTTCTAAGCGGATATTACCGTTTAGGCTGTCTGGACTTGATATCAAGTAGCGTTTGTTGCATGATGCCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGTCCTTAGGAATAAATAATTG</pcr_primer_p1>
		<pcr_primer_p2>ACTCATGTGTTCGTCGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGGTCCTTAGGAATAAATAATTGCTCACAATTTTTCGACTCTCTAGGACTCCACGTCACTCCAGTCGTCGGCAAAGCGTCAAACGATTCCGTTGACTTTTTATTTCGCCGGCACACTAATCTCCCTTGAGCAAACATTGCTAACAATGGTCCCTGTTCATAAAATCTACGCAATGACACAGCGCAGGTGCCTTCTGTCTGTGCTCTGTTTTGGTGTTACTGTGCCAGATGACTCGACGAACACATGAGT</canonical_amplicon>
		<polymorphic_amplicon>GGGTCCTTAGGAATAAATAATTGCTCACAATTTTTCGACTCTCTAGGACTCCACGTCACTCCARTCGTCGGCAAAGCGTCAAACGATTCCGTTGACTTTTTATTTCGCCGGCACACTAATCTCCCTTGAGCAAACATTGCTAACAATGGTCCCTGTTCATAAAATCTACGCAATGACACAGCGCAGGTGCCTTCTGTCTGTGCTCTGTTTTGGTGTTACTGTGCCAGATGACTCGACGAACACATGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34110</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>783393</contig_pos>
        <strand>+</strand>
        <context>ATATGCACAT[C/T]TAATGGCCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAGATGACTCGACGAACACATGAGTTGCGCAACAGGGCGATATGCACAT</left_flank>
        <right_flank>TAATGGCCGGAGTCGAGGGAGGATTAGCACTATTGATCCGATATATTTTT</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAAAAAAGGAACTTGAGACGCAGACTGAATTTCTCTGCGTCTCCACCTTATGTGTGCTATTTAGGCTTGCCGCTTCGAGAAACCTACCGTATTCAGACTGCAAAAAATACTATCTATTGTTCATTTTTTCAGACAGCAATAATACCAAGCCGTGTCAGCATCTTGTGAATCGTTTGGTTTAAGACATGTTTTATGTTTAAATCAGTAACTCTGAATTAAGTTTGGGGTCCTTAGGAATAAATAATTGCTCACAATTTTTCGACTCTCTAGGACTCCACGTCACTCCAGTCGTCGGCAAAGCGTCAAACGATTCCGTTGACTTTTTATTTCGCCGGCACACTAATCTCCCTTGAGCAAACATTGCTAACAATGGTCCCTGTTCATAAAATCTACGCAATGACACAGCGCAGGTGCCTTCTGTCTGTGCTCTGTTTTGGTGTTACTGTGCCAGATGACTCGACGAACACATGAGTTGCGCAACAGGGCGATATGCACATTTAATGGCCGGAGTCGAGGGAGGATTAGCACTATTGATCCGATATATTTTTGGCTGTAGCGAAAACAATGTCCAAATGTGACCATCGTAGTTGAGATGATAACAACGCCTAATGATAAGTGTTGATAATACAGAACTTGGAATGCGTTCGTGATGATTGTCGGACCTCAAAAATTGACATTTAGATTTTAACTAAGATTATTGCTTATCGTTGGTGCGGATGTTCTAAGCGGATATTACCGTTTAGGCTGTCTGGACTTGATATCAAGTAGCGTTTGTTGCATGATGCCCAGAAGATAAGTCCCACCGGTCATAAGAGCGGACCAAACATGATGACCAGGGATGTTCGGAACGGAAAGCGGAATCCCAAAAACTTCACAAGTTCCGCGCATTTTCGGAATGAAAATCCAACCGAGAAATGTCCGAAGATTTTTTTCAGAATCAAATTCCGAACAGAACACCCGTTAATACAAAAGGCATCCGCGCGGTGTCATTGGGTAAC</canonical>
            <polymorphic>TAAAAAAAAGGAACTTGAGACGCAGACTGAATTTCTCTGCGTCTCCACCTTATGTGTGCTATTTAGGCTTGCCGCTTCGAGAAACCTACCGTATTCAGACTGCAAAAAATACTATCTATTGTTCATTTTTTCAGACAGCAATAATACCAAGCCGTGTCAGCATCTTGTGAATCGTTTGGTTTAAGACATGTTTTATGTTTAAATCAGTAACTCTGAATTAAGTTTGGGGTCCTTAGGAATAAATAATTGCTCACAATTTTTCGACTCTCTAGGACTCCACGTCACTCCAGTCGTCGGCAAAGCGTCAAACGATTCCGTTGACTTTTTATTTCGCCGGCACACTAATCTCCCTTGAGCAAACATTGCTAACAATGGTCCCTGTTCATAAAATCTACGCAATGACACAGCGCAGGTGCCTTCTGTCTGTGCTCTGTTTTGGTGTTACTGTGCCAGATGACTCGACGAACACATGAGTTGCGCAACAGGGCGATATGCACATYTAATGGCCGGAGTCGAGGGAGGATTAGCACTATTGATCCGATATATTTTTGGCTGTAGCGAAAACAATGTCCAAATGTGACCATCGTAGTTGAGATGATAACAACGCCTAATGATAAGTGTTGATAATACAGAACTTGGAATGCGTTCGTGATGATTGTCGGACCTCAAAAATTGACATTTAGATTTTAACTAAGATTATTGCTTATCGTTGGTGCGGATGTTCTAAGCGGATATTACCGTTTAGGCTGTCTGGACTTGATATCAAGTAGCGTTTGTTGCATGATGCCCAGAAGATAAGTCCCACCGGTCATAAGAGCGGACCAAACATGATGACCAGGGATGTTCGGAACGGAAAGCGGAATCCCAAAAACTTCACAAGTTCCGCGCATTTTCGGAATGAAAATCCAACCGAGAAATGTCCGAAGATTTTTTTCAGAATCAAATTCCGAACAGAACACCCGTTAATACAAAAGGCATCCGCGCGGTGTCATTGGGTAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>282 276 187 181 37 19 18</canonical_bands>
                <polymorphic_bands>469 276 181 37 19 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCCCTGTTCATAAAATCTACG</pcr_primer_p1>
		<pcr_primer_p2>CACTTATCATTAGGCGTTGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTCCCTGTTCATAAAATCTACGCAATGACACAGCGCAGGTGCCTTCTGTCTGTGCTCTGTTTTGGTGTTACTGTGCCAGATGACTCGACGAACACATGAGTTGCGCAACAGGGCGATATGCACATTTAATGGCCGGAGTCGAGGGAGGATTAGCACTATTGATCCGATATATTTTTGGCTGTAGCGAAAACAATGTCCAAATGTGACCATCGTAGTTGAGATGATAACAACGCCTAATGATAAGTG</canonical_amplicon>
		<polymorphic_amplicon>GTCCCTGTTCATAAAATCTACGCAATGACACAGCGCAGGTGCCTTCTGTCTGTGCTCTGTTTTGGTGTTACTGTGCCAGATGACTCGACGAACACATGAGTTGCGCAACAGGGCGATATGCACATYTAATGGCCGGAGTCGAGGGAGGATTAGCACTATTGATCCGATATATTTTTGGCTGTAGCGAAAACAATGTCCAAATGTGACCATCGTAGTTGAGATGATAACAACGCCTAATGATAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34111</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>880000</contig_pos>
        <strand>+</strand>
        <context>AGTTTCTTAT[C/T]CTTTTTTCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTGCTTACGATTATCTCTAAATTTTTTCAAATACTGTCAGTTTCTTAT</left_flank>
        <right_flank>CTTTTTTCAGTTTTCAACAAGAGAACAGTTGGGTTACTGTCATCGATGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAGGCATTTTTAGGCCATTTTGAAGTGGTGGCCTAGAAAACCAAATTCGCAAAAGTTAGGCCACCATTTCAAAATGACCTAGAAAACACATGAGGGTAATGTTAGGGCGTTTTTAGGCCATTTTGAAGTGGTGGCCTAGAAAACCAAATTCGCAAAAGTTAGGCCACCACTTCAAAATGACCCAGAAAACAGACCAGGGTCATGTTAAGGCATTTTTAGGCCATTTTGAAGAGGTGGCCTACTCGGTAAATGTAGGCAACTTTGGGGCAGAAGTTAGGTGAATTAGGCTGCGGGCAGACTTTGGTCCAAGGCTGGGCAGAAGTTGGGCAATAGACCAACGGCGCGCAGAGGGGCAACGGCTGGGCAGACGCTGGGCAGAAGCTCAGGAGGTTGCGATGATGCAACATTTTTTACGGTTATCAGTTTTAAACATTTTTTTTTCTATGAATTTGCTTACGATTATCTCTAAATTTTTTCAAATACTGTCAGTTTCTTATTCTTTTTTCAGTTTTCAACAAGAGAACAGTTGGGTTACTGTCATCGATGAGTGGAATCGGGTGAAGCGAACAAAAAACGGGAAGCCATTGGTGAGCATAGAAAAGGATGAGTTTTGCCATTTTTCATTTTAAGAGATGGAATATCAGATGGCAAGAGAAGAAATCTACGAAATCCCATCAGAAGTATCCCACAAAGGAGGTATGATTTTTTTTCGAAATTAAGGCTCACATTGACTCACTTTTAGAATCTACGACGAAACGGAACAGTCAACTTGAAAAAGAAGAAATTTATGACAACCCAATTACGAAAGATTTAAAGGACGATGTAATGGAAGAGGATGAAGCGTTTGAGAGTAGTGGTCCTGAAGACGCAAACGAGCCGACAATGGACTTCTTCAGTTAGTTTCAGTTCAAATTTGTAAGCGTTGTAGAAGCGAAAGTTTTGTAGACGCGTTATCTGTAACTGTATGTAATTCAGACTTTGAATATGCGGTATCGAAT</canonical>
            <polymorphic>TTAAGGCATTTTTAGGCCATTTTGAAGTGGTGGCCTAGAAAACCAAATTCGCAAAAGTTAGGCCACCATTTCAAAATGACCTAGAAAACACATGAGGGTAATGTTAGGGCGTTTTTAGGCCATTTTGAAGTGGTGGCCTAGAAAACCAAATTCGCAAAAGTTAGGCCACCACTTCAAAATGACCCAGAAAACAGACCAGGGTCATGTTAAGGCATTTTTAGGCCATTTTGAAGAGGTGGCCTACTCGGTAAATGTAGGCAACTTTGGGGCAGAAGTTAGGTGAATTAGGCTGCGGGCAGACTTTGGTCCAAGGCTGGGCAGAAGTTGGGCAATAGACCAACGGCGCGCAGAGGGGCAACGGCTGGGCAGACGCTGGGCAGAAGCTCAGGAGGTTGCGATGATGCAACATTTTTTACGGTTATCAGTTTTAAACATTTTTTTTTCTATGAATTTGCTTACGATTATCTCTAAATTTTTTCAAATACTGTCAGTTTCTTATYCTTTTTTCAGTTTTCAACAAGAGAACAGTTGGGTTACTGTCATCGATGAGTGGAATCGGGTGAAGCGAACAAAAAACGGGAAGCCATTGGTGAGCATAGAAAAGGATGAGTTTTGCCATTTTTCATTTTAAGAGATGGAATATCAGATGGCAAGAGAAGAAATCTACGAAATCCCATCAGAAGTATCCCACAAAGGAGGTATGATTTTTTTTCGAAATTAAGGCTCACATTGACTCACTTTTAGAATCTACGACGAAACGGAACAGTCAACTTGAAAAAGAAGAAATTTATGACAACCCAATTACGAAAGATTTAAAGGACGATGTAATGGAAGAGGATGAAGCGTTTGAGAGTAGTGGTCCTGAAGACGCAAACGAGCCGACAATGGACTTCTTCAGTTAGTTTCAGTTCAAATTTGTAAGCGTTGTAGAAGCGAAAGTTTTGTAGACGCGTTATCTGTAACTGTATGTAATTCAGACTTTGAATATGCGGTATCGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTATGAATTTGCTTACGAT</pcr_primer_p1>
		<pcr_primer_p2>GGATACTTCTGATGGGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTATGAATTTGCTTACGATTATCTCTAAATTTTTTCAAATACTGTCAGTTTCTTATTCTTTTTTCAGTTTTCAACAAGAGAACAGTTGGGTTACTGTCATCGATGAGTGGAATCGGGTGAAGCGAACAAAAAACGGGAAGCCATTGGTGAGCATAGAAAAGGATGAGTTTTGCCATTTTTCATTTTAAGAGATGGAATATCAGATGGCAAGAGAAGAAATCTACGAAATCCCATCAGAAGTATCC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTATGAATTTGCTTACGATTATCTCTAAATTTTTTCAAATACTGTCAGTTTCTTATYCTTTTTTCAGTTTTCAACAAGAGAACAGTTGGGTTACTGTCATCGATGAGTGGAATCGGGTGAAGCGAACAAAAAACGGGAAGCCATTGGTGAGCATAGAAAAGGATGAGTTTTGCCATTTTTCATTTTAAGAGATGGAATATCAGATGGCAAGAGAAGAAATCTACGAAATCCCATCAGAAGTATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34112</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>880030</contig_pos>
        <strand>+</strand>
        <context>AGAGAACAGT[A/T]GGGTTACTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATACTGTCAGTTTCTTATTCTTTTTTCAGTTTTCAACAAGAGAACAGT</left_flank>
        <right_flank>GGGTTACTGTCATCGATGAGTGGAATCGGGTGAAGCGAACAAAAAACGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCCTAGAAAACCAAATTCGCAAAAGTTAGGCCACCATTTCAAAATGACCTAGAAAACACATGAGGGTAATGTTAGGGCGTTTTTAGGCCATTTTGAAGTGGTGGCCTAGAAAACCAAATTCGCAAAAGTTAGGCCACCACTTCAAAATGACCCAGAAAACAGACCAGGGTCATGTTAAGGCATTTTTAGGCCATTTTGAAGAGGTGGCCTACTCGGTAAATGTAGGCAACTTTGGGGCAGAAGTTAGGTGAATTAGGCTGCGGGCAGACTTTGGTCCAAGGCTGGGCAGAAGTTGGGCAATAGACCAACGGCGCGCAGAGGGGCAACGGCTGGGCAGACGCTGGGCAGAAGCTCAGGAGGTTGCGATGATGCAACATTTTTTACGGTTATCAGTTTTAAACATTTTTTTTTCTATGAATTTGCTTACGATTATCTCTAAATTTTTTCAAATACTGTCAGTTTCTTATTCTTTTTTCAGTTTTCAACAAGAGAACAGTTGGGTTACTGTCATCGATGAGTGGAATCGGGTGAAGCGAACAAAAAACGGGAAGCCATTGGTGAGCATAGAAAAGGATGAGTTTTGCCATTTTTCATTTTAAGAGATGGAATATCAGATGGCAAGAGAAGAAATCTACGAAATCCCATCAGAAGTATCCCACAAAGGAGGTATGATTTTTTTTCGAAATTAAGGCTCACATTGACTCACTTTTAGAATCTACGACGAAACGGAACAGTCAACTTGAAAAAGAAGAAATTTATGACAACCCAATTACGAAAGATTTAAAGGACGATGTAATGGAAGAGGATGAAGCGTTTGAGAGTAGTGGTCCTGAAGACGCAAACGAGCCGACAATGGACTTCTTCAGTTAGTTTCAGTTCAAATTTGTAAGCGTTGTAGAAGCGAAAGTTTTGTAGACGCGTTATCTGTAACTGTATGTAATTCAGACTTTGAATATGCGGTATCGAATGTTGCTGATTACGACCCCCGCACTTACATC</canonical>
            <polymorphic>TGGCCTAGAAAACCAAATTCGCAAAAGTTAGGCCACCATTTCAAAATGACCTAGAAAACACATGAGGGTAATGTTAGGGCGTTTTTAGGCCATTTTGAAGTGGTGGCCTAGAAAACCAAATTCGCAAAAGTTAGGCCACCACTTCAAAATGACCCAGAAAACAGACCAGGGTCATGTTAAGGCATTTTTAGGCCATTTTGAAGAGGTGGCCTACTCGGTAAATGTAGGCAACTTTGGGGCAGAAGTTAGGTGAATTAGGCTGCGGGCAGACTTTGGTCCAAGGCTGGGCAGAAGTTGGGCAATAGACCAACGGCGCGCAGAGGGGCAACGGCTGGGCAGACGCTGGGCAGAAGCTCAGGAGGTTGCGATGATGCAACATTTTTTACGGTTATCAGTTTTAAACATTTTTTTTTCTATGAATTTGCTTACGATTATCTCTAAATTTTTTCAAATACTGTCAGTTTCTTATTCTTTTTTCAGTTTTCAACAAGAGAACAGTWGGGTTACTGTCATCGATGAGTGGAATCGGGTGAAGCGAACAAAAAACGGGAAGCCATTGGTGAGCATAGAAAAGGATGAGTTTTGCCATTTTTCATTTTAAGAGATGGAATATCAGATGGCAAGAGAAGAAATCTACGAAATCCCATCAGAAGTATCCCACAAAGGAGGTATGATTTTTTTTCGAAATTAAGGCTCACATTGACTCACTTTTAGAATCTACGACGAAACGGAACAGTCAACTTGAAAAAGAAGAAATTTATGACAACCCAATTACGAAAGATTTAAAGGACGATGTAATGGAAGAGGATGAAGCGTTTGAGAGTAGTGGTCCTGAAGACGCAAACGAGCCGACAATGGACTTCTTCAGTTAGTTTCAGTTCAAATTTGTAAGCGTTGTAGAAGCGAAAGTTTTGTAGACGCGTTATCTGTAACTGTATGTAATTCAGACTTTGAATATGCGGTATCGAATGTTGCTGATTACGACCCCCGCACTTACATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTATGAATTTGCTTACGAT</pcr_primer_p1>
		<pcr_primer_p2>GGATACTTCTGATGGGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTATGAATTTGCTTACGATTATCTCTAAATTTTTTCAAATACTGTCAGTTTCTTATTCTTTTTTCAGTTTTCAACAAGAGAACAGTTGGGTTACTGTCATCGATGAGTGGAATCGGGTGAAGCGAACAAAAAACGGGAAGCCATTGGTGAGCATAGAAAAGGATGAGTTTTGCCATTTTTCATTTTAAGAGATGGAATATCAGATGGCAAGAGAAGAAATCTACGAAATCCCATCAGAAGTATCC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTATGAATTTGCTTACGATTATCTCTAAATTTTTTCAAATACTGTCAGTTTCTTATTCTTTTTTCAGTTTTCAACAAGAGAACAGTWGGGTTACTGTCATCGATGAGTGGAATCGGGTGAAGCGAACAAAAAACGGGAAGCCATTGGTGAGCATAGAAAAGGATGAGTTTTGCCATTTTTCATTTTAAGAGATGGAATATCAGATGGCAAGAGAAGAAATCTACGAAATCCCATCAGAAGTATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34113</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>880167</contig_pos>
        <strand>+</strand>
        <context>AAGAAATCTA[C/T]GAAATCCCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATTTTTCATTTTAAGAGATGGAATATCAGATGGCAAGAGAAGAAATCTA</left_flank>
        <right_flank>GAAATCCCATCAGAAGTATCCCACAAAGGAGGTATGATTTTTTTTCGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCACTTCAAAATGACCCAGAAAACAGACCAGGGTCATGTTAAGGCATTTTTAGGCCATTTTGAAGAGGTGGCCTACTCGGTAAATGTAGGCAACTTTGGGGCAGAAGTTAGGTGAATTAGGCTGCGGGCAGACTTTGGTCCAAGGCTGGGCAGAAGTTGGGCAATAGACCAACGGCGCGCAGAGGGGCAACGGCTGGGCAGACGCTGGGCAGAAGCTCAGGAGGTTGCGATGATGCAACATTTTTTACGGTTATCAGTTTTAAACATTTTTTTTTCTATGAATTTGCTTACGATTATCTCTAAATTTTTTCAAATACTGTCAGTTTCTTATTCTTTTTTCAGTTTTCAACAAGAGAACAGTTGGGTTACTGTCATCGATGAGTGGAATCGGGTGAAGCGAACAAAAAACGGGAAGCCATTGGTGAGCATAGAAAAGGATGAGTTTTGCCATTTTTCATTTTAAGAGATGGAATATCAGATGGCAAGAGAAGAAATCTACGAAATCCCATCAGAAGTATCCCACAAAGGAGGTATGATTTTTTTTCGAAATTAAGGCTCACATTGACTCACTTTTAGAATCTACGACGAAACGGAACAGTCAACTTGAAAAAGAAGAAATTTATGACAACCCAATTACGAAAGATTTAAAGGACGATGTAATGGAAGAGGATGAAGCGTTTGAGAGTAGTGGTCCTGAAGACGCAAACGAGCCGACAATGGACTTCTTCAGTTAGTTTCAGTTCAAATTTGTAAGCGTTGTAGAAGCGAAAGTTTTGTAGACGCGTTATCTGTAACTGTATGTAATTCAGACTTTGAATATGCGGTATCGAATGTTGCTGATTACGACCCCCGCACTTACATCAGAGCTACACTTCAACGTTTTGCAGAAAACATCGGAGTGTTCAACCCATTTGACGTGGAAAGATGACAAATCGAAACGAGGAGTTGAAGTACCAGATGGCTATGCCAGGAGATCTACTTATAAGTGTCTTTGTTCGA</canonical>
            <polymorphic>ACCACTTCAAAATGACCCAGAAAACAGACCAGGGTCATGTTAAGGCATTTTTAGGCCATTTTGAAGAGGTGGCCTACTCGGTAAATGTAGGCAACTTTGGGGCAGAAGTTAGGTGAATTAGGCTGCGGGCAGACTTTGGTCCAAGGCTGGGCAGAAGTTGGGCAATAGACCAACGGCGCGCAGAGGGGCAACGGCTGGGCAGACGCTGGGCAGAAGCTCAGGAGGTTGCGATGATGCAACATTTTTTACGGTTATCAGTTTTAAACATTTTTTTTTCTATGAATTTGCTTACGATTATCTCTAAATTTTTTCAAATACTGTCAGTTTCTTATTCTTTTTTCAGTTTTCAACAAGAGAACAGTTGGGTTACTGTCATCGATGAGTGGAATCGGGTGAAGCGAACAAAAAACGGGAAGCCATTGGTGAGCATAGAAAAGGATGAGTTTTGCCATTTTTCATTTTAAGAGATGGAATATCAGATGGCAAGAGAAGAAATCTAYGAAATCCCATCAGAAGTATCCCACAAAGGAGGTATGATTTTTTTTCGAAATTAAGGCTCACATTGACTCACTTTTAGAATCTACGACGAAACGGAACAGTCAACTTGAAAAAGAAGAAATTTATGACAACCCAATTACGAAAGATTTAAAGGACGATGTAATGGAAGAGGATGAAGCGTTTGAGAGTAGTGGTCCTGAAGACGCAAACGAGCCGACAATGGACTTCTTCAGTTAGTTTCAGTTCAAATTTGTAAGCGTTGTAGAAGCGAAAGTTTTGTAGACGCGTTATCTGTAACTGTATGTAATTCAGACTTTGAATATGCGGTATCGAATGTTGCTGATTACGACCCCCGCACTTACATCAGAGCTACACTTCAACGTTTTGCAGAAAACATCGGAGTGTTCAACCCATTTGACGTGGAAAGATGACAAATCGAAACGAGGAGTTGAAGTACCAGATGGCTATGCCAGGAGATCTACTTATAAGTGTCTTTGTTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCATAGAAAAGGATGAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>CATTACATCGTCCTTTAAATCTT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GAGCATAGAAAAGGATGAGTTTTGCCATTTTTCATTTTAAGAGATGGAATATCAGATGGCAAGAGAAGAAATCTACGAAATCCCATCAGAAGTATCCCACAAAGGAGGTATGATTTTTTTTCGAAATTAAGGCTCACATTGACTCACTTTTAGAATCTACGACGAAACGGAACAGTCAACTTGAAAAAGAAGAAATTTATGACAACCCAATTACGAAAGATTTAAAGGACGATGTAATG</canonical_amplicon>
		<polymorphic_amplicon>GAGCATAGAAAAGGATGAGTTTTGCCATTTTTCATTTTAAGAGATGGAATATCAGATGGCAAGAGAAGAAATCTAYGAAATCCCATCAGAAGTATCCCACAAAGGAGGTATGATTTTTTTTCGAAATTAAGGCTCACATTGACTCACTTTTAGAATCTACGACGAAACGGAACAGTCAACTTGAAAAAGAAGAAATTTATGACAACCCAATTACGAAAGATTTAAAGGACGATGTAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34114</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>880212</contig_pos>
        <strand>+</strand>
        <context>TGATTTTTTT[A/T]CGAAATTAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCTACGAAATCCCATCAGAAGTATCCCACAAAGGAGGTATGATTTTTTT</left_flank>
        <right_flank>CGAAATTAAGGCTCACATTGACTCACTTTTAGAATCTACGACGAAACGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTTTAGGCCATTTTGAAGAGGTGGCCTACTCGGTAAATGTAGGCAACTTTGGGGCAGAAGTTAGGTGAATTAGGCTGCGGGCAGACTTTGGTCCAAGGCTGGGCAGAAGTTGGGCAATAGACCAACGGCGCGCAGAGGGGCAACGGCTGGGCAGACGCTGGGCAGAAGCTCAGGAGGTTGCGATGATGCAACATTTTTTACGGTTATCAGTTTTAAACATTTTTTTTTCTATGAATTTGCTTACGATTATCTCTAAATTTTTTCAAATACTGTCAGTTTCTTATTCTTTTTTCAGTTTTCAACAAGAGAACAGTTGGGTTACTGTCATCGATGAGTGGAATCGGGTGAAGCGAACAAAAAACGGGAAGCCATTGGTGAGCATAGAAAAGGATGAGTTTTGCCATTTTTCATTTTAAGAGATGGAATATCAGATGGCAAGAGAAGAAATCTACGAAATCCCATCAGAAGTATCCCACAAAGGAGGTATGATTTTTTTTCGAAATTAAGGCTCACATTGACTCACTTTTAGAATCTACGACGAAACGGAACAGTCAACTTGAAAAAGAAGAAATTTATGACAACCCAATTACGAAAGATTTAAAGGACGATGTAATGGAAGAGGATGAAGCGTTTGAGAGTAGTGGTCCTGAAGACGCAAACGAGCCGACAATGGACTTCTTCAGTTAGTTTCAGTTCAAATTTGTAAGCGTTGTAGAAGCGAAAGTTTTGTAGACGCGTTATCTGTAACTGTATGTAATTCAGACTTTGAATATGCGGTATCGAATGTTGCTGATTACGACCCCCGCACTTACATCAGAGCTACACTTCAACGTTTTGCAGAAAACATCGGAGTGTTCAACCCATTTGACGTGGAAAGATGACAAATCGAAACGAGGAGTTGAAGTACCAGATGGCTATGCCAGGAGATCTACTTATAAGTGTCTTTGTTCGAATTCTTGTGTTCTATCATTTTTATTTTTTCTGTTTTCCATTCTTT</canonical>
            <polymorphic>CATTTTTAGGCCATTTTGAAGAGGTGGCCTACTCGGTAAATGTAGGCAACTTTGGGGCAGAAGTTAGGTGAATTAGGCTGCGGGCAGACTTTGGTCCAAGGCTGGGCAGAAGTTGGGCAATAGACCAACGGCGCGCAGAGGGGCAACGGCTGGGCAGACGCTGGGCAGAAGCTCAGGAGGTTGCGATGATGCAACATTTTTTACGGTTATCAGTTTTAAACATTTTTTTTTCTATGAATTTGCTTACGATTATCTCTAAATTTTTTCAAATACTGTCAGTTTCTTATTCTTTTTTCAGTTTTCAACAAGAGAACAGTTGGGTTACTGTCATCGATGAGTGGAATCGGGTGAAGCGAACAAAAAACGGGAAGCCATTGGTGAGCATAGAAAAGGATGAGTTTTGCCATTTTTCATTTTAAGAGATGGAATATCAGATGGCAAGAGAAGAAATCTACGAAATCCCATCAGAAGTATCCCACAAAGGAGGTATGATTTTTTTWCGAAATTAAGGCTCACATTGACTCACTTTTAGAATCTACGACGAAACGGAACAGTCAACTTGAAAAAGAAGAAATTTATGACAACCCAATTACGAAAGATTTAAAGGACGATGTAATGGAAGAGGATGAAGCGTTTGAGAGTAGTGGTCCTGAAGACGCAAACGAGCCGACAATGGACTTCTTCAGTTAGTTTCAGTTCAAATTTGTAAGCGTTGTAGAAGCGAAAGTTTTGTAGACGCGTTATCTGTAACTGTATGTAATTCAGACTTTGAATATGCGGTATCGAATGTTGCTGATTACGACCCCCGCACTTACATCAGAGCTACACTTCAACGTTTTGCAGAAAACATCGGAGTGTTCAACCCATTTGACGTGGAAAGATGACAAATCGAAACGAGGAGTTGAAGTACCAGATGGCTATGCCAGGAGATCTACTTATAAGTGTCTTTGTTCGAATTCTTGTGTTCTATCATTTTTATTTTTTCTGTTTTCCATTCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>500 452 48</canonical_bands>
                <polymorphic_bands>952 48</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>332 283 169 106 63 47</canonical_bands>
                <polymorphic_bands>452 332 106 63 47</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCATTTTAAGAGATGGAATATCA</pcr_primer_p1>
		<pcr_primer_p2>GTCTTCAGGACCACTACTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTCATTTTAAGAGATGGAATATCAGATGGCAAGAGAAGAAATCTACGAAATCCCATCAGAAGTATCCCACAAAGGAGGTATGATTTTTTTTCGAAATTAAGGCTCACATTGACTCACTTTTAGAATCTACGACGAAACGGAACAGTCAACTTGAAAAAGAAGAAATTTATGACAACCCAATTACGAAAGATTTAAAGGACGATGTAATGGAAGAGGATGAAGCGTTTGAGAGTAGTGGTCCTGAAGAC</canonical_amplicon>
		<polymorphic_amplicon>TTCATTTTAAGAGATGGAATATCAGATGGCAAGAGAAGAAATCTACGAAATCCCATCAGAAGTATCCCACAAAGGAGGTATGATTTTTTTWCGAAATTAAGGCTCACATTGACTCACTTTTAGAATCTACGACGAAACGGAACAGTCAACTTGAAAAAGAAGAAATTTATGACAACCCAATTACGAAAGATTTAAAGGACGATGTAATGGAAGAGGATGAAGCGTTTGAGAGTAGTGGTCCTGAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34115</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>880237</contig_pos>
        <strand>+</strand>
        <context>ACATTGACTC[A/G]CTTTTAGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCACAAAGGAGGTATGATTTTTTTTCGAAATTAAGGCTCACATTGACTC</left_flank>
        <right_flank>CTTTTAGAATCTACGACGAAACGGAACAGTCAACTTGAAAAAGAAGAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCCTACTCGGTAAATGTAGGCAACTTTGGGGCAGAAGTTAGGTGAATTAGGCTGCGGGCAGACTTTGGTCCAAGGCTGGGCAGAAGTTGGGCAATAGACCAACGGCGCGCAGAGGGGCAACGGCTGGGCAGACGCTGGGCAGAAGCTCAGGAGGTTGCGATGATGCAACATTTTTTACGGTTATCAGTTTTAAACATTTTTTTTTCTATGAATTTGCTTACGATTATCTCTAAATTTTTTCAAATACTGTCAGTTTCTTATTCTTTTTTCAGTTTTCAACAAGAGAACAGTTGGGTTACTGTCATCGATGAGTGGAATCGGGTGAAGCGAACAAAAAACGGGAAGCCATTGGTGAGCATAGAAAAGGATGAGTTTTGCCATTTTTCATTTTAAGAGATGGAATATCAGATGGCAAGAGAAGAAATCTACGAAATCCCATCAGAAGTATCCCACAAAGGAGGTATGATTTTTTTTCGAAATTAAGGCTCACATTGACTCACTTTTAGAATCTACGACGAAACGGAACAGTCAACTTGAAAAAGAAGAAATTTATGACAACCCAATTACGAAAGATTTAAAGGACGATGTAATGGAAGAGGATGAAGCGTTTGAGAGTAGTGGTCCTGAAGACGCAAACGAGCCGACAATGGACTTCTTCAGTTAGTTTCAGTTCAAATTTGTAAGCGTTGTAGAAGCGAAAGTTTTGTAGACGCGTTATCTGTAACTGTATGTAATTCAGACTTTGAATATGCGGTATCGAATGTTGCTGATTACGACCCCCGCACTTACATCAGAGCTACACTTCAACGTTTTGCAGAAAACATCGGAGTGTTCAACCCATTTGACGTGGAAAGATGACAAATCGAAACGAGGAGTTGAAGTACCAGATGGCTATGCCAGGAGATCTACTTATAAGTGTCTTTGTTCGAATTCTTGTGTTCTATCATTTTTATTTTTTCTGTTTTCCATTCTTTTCTGTAATTTTTTTAAATTTCTAAA</canonical>
            <polymorphic>GGCCTACTCGGTAAATGTAGGCAACTTTGGGGCAGAAGTTAGGTGAATTAGGCTGCGGGCAGACTTTGGTCCAAGGCTGGGCAGAAGTTGGGCAATAGACCAACGGCGCGCAGAGGGGCAACGGCTGGGCAGACGCTGGGCAGAAGCTCAGGAGGTTGCGATGATGCAACATTTTTTACGGTTATCAGTTTTAAACATTTTTTTTTCTATGAATTTGCTTACGATTATCTCTAAATTTTTTCAAATACTGTCAGTTTCTTATTCTTTTTTCAGTTTTCAACAAGAGAACAGTTGGGTTACTGTCATCGATGAGTGGAATCGGGTGAAGCGAACAAAAAACGGGAAGCCATTGGTGAGCATAGAAAAGGATGAGTTTTGCCATTTTTCATTTTAAGAGATGGAATATCAGATGGCAAGAGAAGAAATCTACGAAATCCCATCAGAAGTATCCCACAAAGGAGGTATGATTTTTTTTCGAAATTAAGGCTCACATTGACTCRCTTTTAGAATCTACGACGAAACGGAACAGTCAACTTGAAAAAGAAGAAATTTATGACAACCCAATTACGAAAGATTTAAAGGACGATGTAATGGAAGAGGATGAAGCGTTTGAGAGTAGTGGTCCTGAAGACGCAAACGAGCCGACAATGGACTTCTTCAGTTAGTTTCAGTTCAAATTTGTAAGCGTTGTAGAAGCGAAAGTTTTGTAGACGCGTTATCTGTAACTGTATGTAATTCAGACTTTGAATATGCGGTATCGAATGTTGCTGATTACGACCCCCGCACTTACATCAGAGCTACACTTCAACGTTTTGCAGAAAACATCGGAGTGTTCAACCCATTTGACGTGGAAAGATGACAAATCGAAACGAGGAGTTGAAGTACCAGATGGCTATGCCAGGAGATCTACTTATAAGTGTCTTTGTTCGAATTCTTGTGTTCTATCATTTTTATTTTTTCTGTTTTCCATTCTTTTCTGTAATTTTTTTAAATTTCTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>270 164 121 98 69 61 45 37 30 30 20 18 17 10 10</canonical_bands>
                <polymorphic_bands>270 164 131 98 69 61 45 37 30 30 20 18 17 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCATTTTAAGAGATGGAATATCA</pcr_primer_p1>
		<pcr_primer_p2>GTCTTCAGGACCACTACTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTCATTTTAAGAGATGGAATATCAGATGGCAAGAGAAGAAATCTACGAAATCCCATCAGAAGTATCCCACAAAGGAGGTATGATTTTTTTTCGAAATTAAGGCTCACATTGACTCACTTTTAGAATCTACGACGAAACGGAACAGTCAACTTGAAAAAGAAGAAATTTATGACAACCCAATTACGAAAGATTTAAAGGACGATGTAATGGAAGAGGATGAAGCGTTTGAGAGTAGTGGTCCTGAAGAC</canonical_amplicon>
		<polymorphic_amplicon>TTCATTTTAAGAGATGGAATATCAGATGGCAAGAGAAGAAATCTACGAAATCCCATCAGAAGTATCCCACAAAGGAGGTATGATTTTTTTTCGAAATTAAGGCTCACATTGACTCRCTTTTAGAATCTACGACGAAACGGAACAGTCAACTTGAAAAAGAAGAAATTTATGACAACCCAATTACGAAAGATTTAAAGGACGATGTAATGGAAGAGGATGAAGCGTTTGAGAGTAGTGGTCCTGAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34116</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>880250</contig_pos>
        <strand>+</strand>
        <context>TTTAGAATCT[A/C]CGACGAAACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATGATTTTTTTTCGAAATTAAGGCTCACATTGACTCACTTTTAGAATCT</left_flank>
        <right_flank>CGACGAAACGGAACAGTCAACTTGAAAAAGAAGAAATTTATGACAACCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGTAGGCAACTTTGGGGCAGAAGTTAGGTGAATTAGGCTGCGGGCAGACTTTGGTCCAAGGCTGGGCAGAAGTTGGGCAATAGACCAACGGCGCGCAGAGGGGCAACGGCTGGGCAGACGCTGGGCAGAAGCTCAGGAGGTTGCGATGATGCAACATTTTTTACGGTTATCAGTTTTAAACATTTTTTTTTCTATGAATTTGCTTACGATTATCTCTAAATTTTTTCAAATACTGTCAGTTTCTTATTCTTTTTTCAGTTTTCAACAAGAGAACAGTTGGGTTACTGTCATCGATGAGTGGAATCGGGTGAAGCGAACAAAAAACGGGAAGCCATTGGTGAGCATAGAAAAGGATGAGTTTTGCCATTTTTCATTTTAAGAGATGGAATATCAGATGGCAAGAGAAGAAATCTACGAAATCCCATCAGAAGTATCCCACAAAGGAGGTATGATTTTTTTTCGAAATTAAGGCTCACATTGACTCACTTTTAGAATCTACGACGAAACGGAACAGTCAACTTGAAAAAGAAGAAATTTATGACAACCCAATTACGAAAGATTTAAAGGACGATGTAATGGAAGAGGATGAAGCGTTTGAGAGTAGTGGTCCTGAAGACGCAAACGAGCCGACAATGGACTTCTTCAGTTAGTTTCAGTTCAAATTTGTAAGCGTTGTAGAAGCGAAAGTTTTGTAGACGCGTTATCTGTAACTGTATGTAATTCAGACTTTGAATATGCGGTATCGAATGTTGCTGATTACGACCCCCGCACTTACATCAGAGCTACACTTCAACGTTTTGCAGAAAACATCGGAGTGTTCAACCCATTTGACGTGGAAAGATGACAAATCGAAACGAGGAGTTGAAGTACCAGATGGCTATGCCAGGAGATCTACTTATAAGTGTCTTTGTTCGAATTCTTGTGTTCTATCATTTTTATTTTTTCTGTTTTCCATTCTTTTCTGTAATTTTTTTAAATTTCTAAAATAAAATGTATAT</canonical>
            <polymorphic>AATGTAGGCAACTTTGGGGCAGAAGTTAGGTGAATTAGGCTGCGGGCAGACTTTGGTCCAAGGCTGGGCAGAAGTTGGGCAATAGACCAACGGCGCGCAGAGGGGCAACGGCTGGGCAGACGCTGGGCAGAAGCTCAGGAGGTTGCGATGATGCAACATTTTTTACGGTTATCAGTTTTAAACATTTTTTTTTCTATGAATTTGCTTACGATTATCTCTAAATTTTTTCAAATACTGTCAGTTTCTTATTCTTTTTTCAGTTTTCAACAAGAGAACAGTTGGGTTACTGTCATCGATGAGTGGAATCGGGTGAAGCGAACAAAAAACGGGAAGCCATTGGTGAGCATAGAAAAGGATGAGTTTTGCCATTTTTCATTTTAAGAGATGGAATATCAGATGGCAAGAGAAGAAATCTACGAAATCCCATCAGAAGTATCCCACAAAGGAGGTATGATTTTTTTTCGAAATTAAGGCTCACATTGACTCACTTTTAGAATCTMCGACGAAACGGAACAGTCAACTTGAAAAAGAAGAAATTTATGACAACCCAATTACGAAAGATTTAAAGGACGATGTAATGGAAGAGGATGAAGCGTTTGAGAGTAGTGGTCCTGAAGACGCAAACGAGCCGACAATGGACTTCTTCAGTTAGTTTCAGTTCAAATTTGTAAGCGTTGTAGAAGCGAAAGTTTTGTAGACGCGTTATCTGTAACTGTATGTAATTCAGACTTTGAATATGCGGTATCGAATGTTGCTGATTACGACCCCCGCACTTACATCAGAGCTACACTTCAACGTTTTGCAGAAAACATCGGAGTGTTCAACCCATTTGACGTGGAAAGATGACAAATCGAAACGAGGAGTTGAAGTACCAGATGGCTATGCCAGGAGATCTACTTATAAGTGTCTTTGTTCGAATTCTTGTGTTCTATCATTTTTATTTTTTCTGTTTTCCATTCTTTTCTGTAATTTTTTTAAATTTCTAAAATAAAATGTATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCATTTTAAGAGATGGAATATCA</pcr_primer_p1>
		<pcr_primer_p2>GTCTTCAGGACCACTACTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTCATTTTAAGAGATGGAATATCAGATGGCAAGAGAAGAAATCTACGAAATCCCATCAGAAGTATCCCACAAAGGAGGTATGATTTTTTTTCGAAATTAAGGCTCACATTGACTCACTTTTAGAATCTACGACGAAACGGAACAGTCAACTTGAAAAAGAAGAAATTTATGACAACCCAATTACGAAAGATTTAAAGGACGATGTAATGGAAGAGGATGAAGCGTTTGAGAGTAGTGGTCCTGAAGAC</canonical_amplicon>
		<polymorphic_amplicon>TTCATTTTAAGAGATGGAATATCAGATGGCAAGAGAAGAAATCTACGAAATCCCATCAGAAGTATCCCACAAAGGAGGTATGATTTTTTTTCGAAATTAAGGCTCACATTGACTCACTTTTAGAATCTMCGACGAAACGGAACAGTCAACTTGAAAAAGAAGAAATTTATGACAACCCAATTACGAAAGATTTAAAGGACGATGTAATGGAAGAGGATGAAGCGTTTGAGAGTAGTGGTCCTGAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34117</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>884552</contig_pos>
        <strand></strand>
        <context>TGTTGCGAGA[T/C]TCCAAATTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAGAAGGAGTTGACTCCGTAAAGGTCGAAGCTGAGAACTTTGTTGCGAGA</left_flank>
        <right_flank>TCCAAATTGCCAATCTGGATTCTTCGAAGCTCATCGAAAAGTTCATTGCC</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTCATCGTGGAGACGGAACTTTGGGAGACCCCATCTTTGTTGAGTCGTCGGACACCGAAGACCAGGAGGCTGAAGATGATCAACAGGAGGACCCAGAAGGAGTTGACTCCGTAAAGGTCGAAGCTGAGAACTTTGTTGCGAGATTCCAAATTGCCAATCTGGATTCTTCGAAGCTCATCGAAAAGTTCATTGCCGATGTGTCCTCAAACGACACAGAAGGCACTGAAGAAAAGAAGAAGAACATCGAGTACATTGATTGGGAGCAATTGGATGAAGACGACCATATGGCTCAAATCGAGGAAAGACAAAAAGCCATTGCATCCAGAAGACGTGACAATCGCCGCCGTCTTCAAGCTCATCGTGGAGACGGAACTTTGGGAGACCCCATCTTTGTTGAGTCGTCGGACACCGAAGACCAGGAGGCTGAAGATGATCAACAGGAGGACCCAGAAGGAGTTGACTCCGTAAAGGTCGAAGCTGAGAACTTTGTTGCGAGATTCCAAATTGCCAATCTGGATTCTTCGAAGCTCATCGAAAAGTTCATTGCCGATGTGTCCTCAAACGAAGGTAAATTTATACTTTATTGTAATTGAAGAAAAATAATTAGAAAAAATTCATTTTTGGTCTTTCAACACAAGACAATCTTTCCAACATCATATCTATCAGGAAAACTTCATATCTTGTTAACCCAGATTTCAAAGAATTTTTATGTCTGTCTAGACACATCTGAATATTTTGAATTCCGCTTGCTAGTTCCAGCCGGGTTAAATCAGTTTTGCAATGAAACCTCAACACCTTTCGAATCCAGATTTTGATGCACATATTGGGATAGGGAATAGCCTATTTAGACACAAACCCGCTCGGCGGTTTCAGCCCAGCTATTTTCGTTTCAGTACCAAATTCGCTGTTTCAGAGAAACAGCGCTTTTCAAATAAAAAAGATTTTTTCAAACCCTAGCACTATCCAGAACATTAAAATTGTTGTGGTCTACTTAAAAT</canonical>
            <polymorphic>AGCTCATCGTGGAGACGGAACTTTGGGAGACCCCATCTTTGTTGAGTCGTCGGACACCGAAGACCAGGAGGCTGAAGATGATCAACAGGAGGACCCAGAAGGAGTTGACTCCGTAAAGGTCGAAGCTGAGAACTTTGTTGCGAGAYTCCAAATTGCCAATCTGGATTCTTCGAAGCTCATCGAAAAGTTCATTGCCGATGTGTCCTCAAACGACACAGAAGGCACTGAAGAAAAGAAGAAGAACATCGAGTACATTGATTGGGAGCAATTGGATGAAGACGACCATATGGCTCAAATCGAGGAAAGACAAAAAGCCATTGCATCCAGAAGACGTGACAATCGCCGCCGTCTTCAAGCTCATCGTGGAGACGGAACTTTGGGAGACCCCATCTTTGTTGAGTCGTCGGACACCGAAGACCAGGAGGCTGAAGATGATCAACAGGAGGACCCAGAAGGAGTTGACTCCGTAAAGGTCGAAGCTGAGAACTTTGTTGCGAGATTCCAAATTGCCAATCTGGATTCTTCGAAGCTCATCGAAAAGTTCATTGCCGATGTGTCCTCAAACGAAGGTAAATTTATACTTTATTGTAATTGAAGAAAAATAATTAGAAAAAATTCATTTTTGGTCTTTCAACACAAGACAATCTTTCCAACATCATATCTATCAGGAAAACTTCATATCTTGTTAACCCAGATTTCAAAGAATTTTTATGTCTGTCTAGACACATCTGAATATTTTGAATTCCGCTTGCTAGTTCCAGCCGGGTTAAATCAGTTTTGCAATGAAACCTCAACACCTTTCGAATCCAGATTTTGATGCACATATTGGGATAGGGAATAGCCTATTTAGACACAAACCCGCTCGGCGGTTTCAGCCCAGCTATTTTCGTTTCAGTACCAAATTCGCTGTTTCAGAGAAACAGCGCTTTTCAAATAAAAAAGATTTTTTCAAACCCTAGCACTATCCAGAACATTAAAATTGTTGTGGTCTACTTAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>334 285 197 144 20 20</canonical_bands>
                <polymorphic_bands>334 285 197 164 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGATGATCAACAGGAGGA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTCCTGATAGATATGATGTTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAGATGATCAACAGGAGGACCCAGAAGGAGTTGACTCCGTAAAGGTCGAAGCTGAGAACTTTGTTGCGAGAYTCCAAATTGCCAATCTGGATTCTTCGAAGCTCATCGAAAAGTTCATTGCCGATGTGTCCTCAAACGACACAGAAGGCACTGAAGAAAAGAAGAAGAACATCGAGTACATTGATTGGGAGCAATTGGATGAAGACGACCATATGGCTCAAATCGAGGAAAGACAAAAAGCCATTGCATCCAGAAGACGTGACAATCGCCGCCGTCTTCAAGCTCATCGTGGAGACGGAACTTTGGGAGACCCCATCTTTGTTGAGTCGTCGGACACCGAAGACCAGGAGGCTGAAGATGATCAACAGGAGGACCCAGAAGGAGTTGACTCCGTAAAGGTCGAAGCTGAGAACTTTGTTGCGAGATTCCAAATTGCCAATCTGGATTCTTCGAAGCTCATCGAAAAGTTCATTGCCGATGTGTCCTCAAACGAAGGTAAATTTATACTTTATTGTAATTGAAGAAAAATAATTAGAAAAAATTCATTTTTGGTCTTTCAACACAAGACAATCTTTCCAACATCATATCTATCAGGAAAAC</canonical_amplicon>
		<polymorphic_amplicon>GAAGATGATCAACAGGAGGACCCAGAAGGAGTTGACTCCGTAAAGGTCGAAGCTGAGAACTTTGTTGCGAGAYTCCAAATTGCCAATCTGGATTCTTCGAAGCTCATCGAAAAGTTCATTGCCGATGTGTCCTCAAACGACACAGAAGGCACTGAAGAAAAGAAGAAGAACATCGAGTACATTGATTGGGAGCAATTGGATGAAGACGACCATATGGCTCAAATCGAGGAAAGACAAAAAGCCATTGCATCCAGAAGACGTGACAATCGCCGCCGTCTTCAAGCTCATCGTGGAGACGGAACTTTGGGAGACCCCATCTTTGTTGAGTCGTCGGACACCGAAGACCAGGAGGCTGAAGATGATCAACAGGAGGACCCAGAAGGAGTTGACTCCGTAAAGGTCGAAGCTGAGAACTTTGTTGCGAGATTCCAAATTGCCAATCTGGATTCTTCGAAGCTCATCGAAAAGTTCATTGCCGATGTGTCCTCAAACGAAGGTAAATTTATACTTTATTGTAATTGAAGAAAAATAATTAGAAAAAATTCATTTTTGGTCTTTCAACACAAGACAATCTTTCCAACATCATATCTATCAGGAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34118</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>884590</contig_pos>
        <strand>+</strand>
        <context>AGCTCATCGA[A/G]AAGTTCATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGTTGCGAGATTCCAAATTGCCAATCTGGATTCTTCGAAGCTCATCGA</left_flank>
        <right_flank>AAGTTCATTGCCGATGTGTCCTCAAACGAAGGTAAATTTATACTTTATTG</right_flank>
        <qual_score>134</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTGAGTCGTCGGACACCGAAGACCAGGAGGCTGAAGATGATCAACAGGAGGACCCAGAAGGAGTTGACTCCGTAAAGGTCGAAGCTGAGAACTTTGTTGCGAGATTCCAAATTGCCAATCTGGATTCTTCGAAGCTCATCGAAAAGTTCATTGCCGATGTGTCCTCAAACGACACAGAAGGCACTGAAGAAAAGAAGAAGAACATCGAGTACATTGATTGGGAGCAATTGGATGAAGACGACCATATGGCTCAAATCGAGGAAAGACAAAAAGCCATTGCATCCAGAAGACGTGACAATCGCCGCCGTCTTCAAGCTCATCGTGGAGACGGAACTTTGGGAGACCCCATCTTTGTTGAGTCGTCGGACACCGAAGACCAGGAGGCTGAAGATGATCAACAGGAGGACCCAGAAGGAGTTGACTCCGTAAAGGTCGAAGCTGAGAACTTTGTTGCGAGATTCCAAATTGCCAATCTGGATTCTTCGAAGCTCATCGAAAAGTTCATTGCCGATGTGTCCTCAAACGAAGGTAAATTTATACTTTATTGTAATTGAAGAAAAATAATTAGAAAAAATTCATTTTTGGTCTTTCAACACAAGACAATCTTTCCAACATCATATCTATCAGGAAAACTTCATATCTTGTTAACCCAGATTTCAAAGAATTTTTATGTCTGTCTAGACACATCTGAATATTTTGAATTCCGCTTGCTAGTTCCAGCCGGGTTAAATCAGTTTTGCAATGAAACCTCAACACCTTTCGAATCCAGATTTTGATGCACATATTGGGATAGGGAATAGCCTATTTAGACACAAACCCGCTCGGCGGTTTCAGCCCAGCTATTTTCGTTTCAGTACCAAATTCGCTGTTTCAGAGAAACAGCGCTTTTCAAATAAAAAAGATTTTTTCAAACCCTAGCACTATCCAGAACATTAAAATTGTTGTGGTCTACTTAAAATTGATTGAAATTTCATATTTCAGATATCTTCTGAAAAAA</canonical>
            <polymorphic>TTGTTGAGTCGTCGGACACCGAAGACCAGGAGGCTGAAGATGATCAACAGGAGGACCCAGAAGGAGTTGACTCCGTAAAGGTCGAAGCTGAGAACTTTGTTGCGAGATTCCAAATTGCCAATCTGGATTCTTCGAAGCTCATCGARAAGTTCATTGCCGATGTGTCCTCAAACGACACAGAAGGCACTGAAGAAAAGAAGAAGAACATCGAGTACATTGATTGGGAGCAATTGGATGAAGACGACCATATGGCTCAAATCGAGGAAAGACAAAAAGCCATTGCATCCAGAAGACGTGACAATCGCCGCCGTCTTCAAGCTCATCGTGGAGACGGAACTTTGGGAGACCCCATCTTTGTTGAGTCGTCGGACACCGAAGACCAGGAGGCTGAAGATGATCAACAGGAGGACCCAGAAGGAGTTGACTCCGTAAAGGTCGAAGCTGAGAACTTTGTTGCGAGATTCCAAATTGCCAATCTGGATTCTTCGAAGCTCATCGAAAAGTTCATTGCCGATGTGTCCTCAAACGAAGGTAAATTTATACTTTATTGTAATTGAAGAAAAATAATTAGAAAAAATTCATTTTTGGTCTTTCAACACAAGACAATCTTTCCAACATCATATCTATCAGGAAAACTTCATATCTTGTTAACCCAGATTTCAAAGAATTTTTATGTCTGTCTAGACACATCTGAATATTTTGAATTCCGCTTGCTAGTTCCAGCCGGGTTAAATCAGTTTTGCAATGAAACCTCAACACCTTTCGAATCCAGATTTTGATGCACATATTGGGATAGGGAATAGCCTATTTAGACACAAACCCGCTCGGCGGTTTCAGCCCAGCTATTTTCGTTTCAGTACCAAATTCGCTGTTTCAGAGAAACAGCGCTTTTCAAATAAAAAAGATTTTTTCAAACCCTAGCACTATCCAGAACATTAAAATTGTTGTGGTCTACTTAAAATTGATTGAAATTTCATATTTCAGATATCTTCTGAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGGAGTTGACTCCGTAAA</pcr_primer_p1>
		<pcr_primer_p2>AATCTGGGTTAACAAGATATGAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGAAGGAGTTGACTCCGTAAAGGTCGAAGCTGAGAACTTTGTTGCGAGATTCCAAATTGCCAATCTGGATTCTTCGAAGCTCATCGARAAGTTCATTGCCGATGTGTCCTCAAACGACACAGAAGGCACTGAAGAAAAGAAGAAGAACATCGAGTACATTGATTGGGAGCAATTGGATGAAGACGACCATATGGCTCAAATCGAGGAAAGACAAAAAGCCATTGCATCCAGAAGACGTGACAATCGCCGCCGTCTTCAAGCTCATCGTGGAGACGGAACTTTGGGAGACCCCATCTTTGTTGAGTCGTCGGACACCGAAGACCAGGAGGCTGAAGATGATCAACAGGAGGACCCAGAAGGAGTTGACTCCGTAAAGGTCGAAGCTGAGAACTTTGTTGCGAGATTCCAAATTGCCAATCTGGATTCTTCGAAGCTCATCGAAAAGTTCATTGCCGATGTGTCCTCAAACGAAGGTAAATTTATACTTTATTGTAATTGAAGAAAAATAATTAGAAAAAATTCATTTTTGGTCTTTCAACACAAGACAATCTTTCCAACATCATATCTATCAGGAAAACTTCATATCTTGTTAACCCAGATT</canonical_amplicon>
		<polymorphic_amplicon>AGAAGGAGTTGACTCCGTAAAGGTCGAAGCTGAGAACTTTGTTGCGAGATTCCAAATTGCCAATCTGGATTCTTCGAAGCTCATCGARAAGTTCATTGCCGATGTGTCCTCAAACGACACAGAAGGCACTGAAGAAAAGAAGAAGAACATCGAGTACATTGATTGGGAGCAATTGGATGAAGACGACCATATGGCTCAAATCGAGGAAAGACAAAAAGCCATTGCATCCAGAAGACGTGACAATCGCCGCCGTCTTCAAGCTCATCGTGGAGACGGAACTTTGGGAGACCCCATCTTTGTTGAGTCGTCGGACACCGAAGACCAGGAGGCTGAAGATGATCAACAGGAGGACCCAGAAGGAGTTGACTCCGTAAAGGTCGAAGCTGAGAACTTTGTTGCGAGATTCCAAATTGCCAATCTGGATTCTTCGAAGCTCATCGAAAAGTTCATTGCCGATGTGTCCTCAAACGAAGGTAAATTTATACTTTATTGTAATTGAAGAAAAATAATTAGAAAAAATTCATTTTTGGTCTTTCAACACAAGACAATCTTTCCAACATCATATCTATCAGGAAAACTTCATATCTTGTTAACCCAGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34119</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>884830</contig_pos>
        <strand>+</strand>
        <context>TAAATCAGTT[A/T]TRCAATGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTGAATATTTTGAATTCCGCTTGCTAGTTCCAGCCGGGTTAAATCAGTT</left_flank>
        <right_flank>TGCAATGAAACCTCAACACCTTTCGAATCCAGATTTTGATGCACATATTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGACCATATGGCTCAAATCGAGGAAAGACAAAAAGCCATTGCATCCAGAAGACGTGACAATCGCCGCCGTCTTCAAGCTCATCGTGGAGACGGAACTTTGGGAGACCCCATCTTTGTTGAGTCGTCGGACACCGAAGACCAGGAGGCTGAAGATGATCAACAGGAGGACCCAGAAGGAGTTGACTCCGTAAAGGTCGAAGCTGAGAACTTTGTTGCGAGATTCCAAATTGCCAATCTGGATTCTTCGAAGCTCATCGAAAAGTTCATTGCCGATGTGTCCTCAAACGAAGGTAAATTTATACTTTATTGTAATTGAAGAAAAATAATTAGAAAAAATTCATTTTTGGTCTTTCAACACAAGACAATCTTTCCAACATCATATCTATCAGGAAAACTTCATATCTTGTTAACCCAGATTTCAAAGAATTTTTATGTCTGTCTAGACACATCTGAATATTTTGAATTCCGCTTGCTAGTTCCAGCCGGGTTAAATCAGTTTTGCAATGAAACCTCAACACCTTTCGAATCCAGATTTTGATGCACATATTGGGATAGGGAATAGCCTATTTAGACACAAACCCGCTCGGCGGTTTCAGCCCAGCTATTTTCGTTTCAGTACCAAATTCGCTGTTTCAGAGAAACAGCGCTTTTCAAATAAAAAAGATTTTTTCAAACCCTAGCACTATCCAGAACATTAAAATTGTTGTGGTCTACTTAAAATTGATTGAAATTTCATATTTCAGATATCTTCTGAAAAAAAAATTTTTTTCAATTTTTTGCCACGATTTTTCAGATTTATTCGAGAATTTAGAAAAACGAAATGATGAAAGAAAATACTGAAATATTGAATTTCATTCAGTTCTCAGTTCGTATGACACAACAAATCCCATGGTTGTGGACGTTGAGAAAATCATATTTGAAAACCGCTATTTTAGCACTGAAAATGCGATTTTTGGTGCGGTGAGCGGATTCTAAAATTTTTGATGCGTATAGATAGGC</canonical>
            <polymorphic>ACGACCATATGGCTCAAATCGAGGAAAGACAAAAAGCCATTGCATCCAGAAGACGTGACAATCGCCGCCGTCTTCAAGCTCATCGTGGAGACGGAACTTTGGGAGACCCCATCTTTGTTGAGTCGTCGGACACCGAAGACCAGGAGGCTGAAGATGATCAACAGGAGGACCCAGAAGGAGTTGACTCCGTAAAGGTCGAAGCTGAGAACTTTGTTGCGAGATTCCAAATTGCCAATCTGGATTCTTCGAAGCTCATCGAAAAGTTCATTGCCGATGTGTCCTCAAACGAAGGTAAATTTATACTTTATTGTAATTGAAGAAAAATAATTAGAAAAAATTCATTTTTGGTCTTTCAACACAAGACAATCTTTCCAACATCATATCTATCAGGAAAACTTCATATCTTGTTAACCCAGATTTCAAAGAATTTTTATGTCTGTCTAGACACATCTGAATATTTTGAATTCCGCTTGCTAGTTCCAGCCGGGTTAAATCAGTTWTGCAATGAAACCTCAACACCTTTCGAATCCAGATTTTGATGCACATATTGGGATAGGGAATAGCCTATTTAGACACAAACCCGCTCGGCGGTTTCAGCCCAGCTATTTTCGTTTCAGTACCAAATTCGCTGTTTCAGAGAAACAGCGCTTTTCAAATAAAAAAGATTTTTTCAAACCCTAGCACTATCCAGAACATTAAAATTGTTGTGGTCTACTTAAAATTGATTGAAATTTCATATTTCAGATATCTTCTGAAAAAAAAATTTTTTTCAATTTTTTGCCACGATTTTTCAGATTTATTCGAGAATTTAGAAAAACGAAATGATGAAAGAAAATACTGAAATATTGAATTTCATTCAGTTCTCAGTTCGTATGACACAACAAATCCCATGGTTGTGGACGTTGAGAAAATCATATTTGAAAACCGCTATTTTAGCACTGAAAATGCGATTTTTGGTGCGGTGAGCGGATTCTAAAATTTTTGATGCGTATAGATAGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCATTTTTGGTCTTTCAAC</pcr_primer_p1>
		<pcr_primer_p2>AGCGGGTTTGTGTCTAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTCATTTTTGGTCTTTCAACACAAGACAATCTTTCCAACATCATATCTATCAGGAAAACTTCATATCTTGTTAACCCAGATTTCAAAGAATTTTTATGTCTGTCTAGACACATCTGAATATTTTGAATTCCGCTTGCTAGTTCCAGCCGGGTTAAATCAGTTTTGCAATGAAACCTCAACACCTTTCGAATCCAGATTTTGATGCACATATTGGGATAGGGAATAGCCTATTTAGACACAAACCCGCT</canonical_amplicon>
		<polymorphic_amplicon>AATTCATTTTTGGTCTTTCAACACAAGACAATCTTTCCAACATCATATCTATCAGGAAAACTTCATATCTTGTTAACCCAGATTTCAAAGAATTTTTATGTCTGTCTAGACACATCTGAATATTTTGAATTCCGCTTGCTAGTTCCAGCCGGGTTAAATCAGTTWTGCAATGAAACCTCAACACCTTTCGAATCCAGATTTTGATGCACATATTGGGATAGGGAATAGCCTATTTAGACACAAACCCGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34120</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>884832</contig_pos>
        <strand>+</strand>
        <context>AATCAGTTWT[A/G]CAATGAAACC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAATATTTTGAATTCCGCTTGCTAGTTCCAGCCGGGTTAAATCAGTTTT</left_flank>
        <right_flank>CAATGAAACCTCAACACCTTTCGAATCCAGATTTTGATGCACATATTGGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACCATATGGCTCAAATCGAGGAAAGACAAAAAGCCATTGCATCCAGAAGACGTGACAATCGCCGCCGTCTTCAAGCTCATCGTGGAGACGGAACTTTGGGAGACCCCATCTTTGTTGAGTCGTCGGACACCGAAGACCAGGAGGCTGAAGATGATCAACAGGAGGACCCAGAAGGAGTTGACTCCGTAAAGGTCGAAGCTGAGAACTTTGTTGCGAGATTCCAAATTGCCAATCTGGATTCTTCGAAGCTCATCGAAAAGTTCATTGCCGATGTGTCCTCAAACGAAGGTAAATTTATACTTTATTGTAATTGAAGAAAAATAATTAGAAAAAATTCATTTTTGGTCTTTCAACACAAGACAATCTTTCCAACATCATATCTATCAGGAAAACTTCATATCTTGTTAACCCAGATTTCAAAGAATTTTTATGTCTGTCTAGACACATCTGAATATTTTGAATTCCGCTTGCTAGTTCCAGCCGGGTTAAATCAGTTTTGCAATGAAACCTCAACACCTTTCGAATCCAGATTTTGATGCACATATTGGGATAGGGAATAGCCTATTTAGACACAAACCCGCTCGGCGGTTTCAGCCCAGCTATTTTCGTTTCAGTACCAAATTCGCTGTTTCAGAGAAACAGCGCTTTTCAAATAAAAAAGATTTTTTCAAACCCTAGCACTATCCAGAACATTAAAATTGTTGTGGTCTACTTAAAATTGATTGAAATTTCATATTTCAGATATCTTCTGAAAAAAAAATTTTTTTCAATTTTTTGCCACGATTTTTCAGATTTATTCGAGAATTTAGAAAAACGAAATGATGAAAGAAAATACTGAAATATTGAATTTCATTCAGTTCTCAGTTCGTATGACACAACAAATCCCATGGTTGTGGACGTTGAGAAAATCATATTTGAAAACCGCTATTTTAGCACTGAAAATGCGATTTTTGGTGCGGTGAGCGGATTCTAAAATTTTTGATGCGTATAGATAGGCTG</canonical>
            <polymorphic>GACCATATGGCTCAAATCGAGGAAAGACAAAAAGCCATTGCATCCAGAAGACGTGACAATCGCCGCCGTCTTCAAGCTCATCGTGGAGACGGAACTTTGGGAGACCCCATCTTTGTTGAGTCGTCGGACACCGAAGACCAGGAGGCTGAAGATGATCAACAGGAGGACCCAGAAGGAGTTGACTCCGTAAAGGTCGAAGCTGAGAACTTTGTTGCGAGATTCCAAATTGCCAATCTGGATTCTTCGAAGCTCATCGAAAAGTTCATTGCCGATGTGTCCTCAAACGAAGGTAAATTTATACTTTATTGTAATTGAAGAAAAATAATTAGAAAAAATTCATTTTTGGTCTTTCAACACAAGACAATCTTTCCAACATCATATCTATCAGGAAAACTTCATATCTTGTTAACCCAGATTTCAAAGAATTTTTATGTCTGTCTAGACACATCTGAATATTTTGAATTCCGCTTGCTAGTTCCAGCCGGGTTAAATCAGTTTTRCAATGAAACCTCAACACCTTTCGAATCCAGATTTTGATGCACATATTGGGATAGGGAATAGCCTATTTAGACACAAACCCGCTCGGCGGTTTCAGCCCAGCTATTTTCGTTTCAGTACCAAATTCGCTGTTTCAGAGAAACAGCGCTTTTCAAATAAAAAAGATTTTTTCAAACCCTAGCACTATCCAGAACATTAAAATTGTTGTGGTCTACTTAAAATTGATTGAAATTTCATATTTCAGATATCTTCTGAAAAAAAAATTTTTTTCAATTTTTTGCCACGATTTTTCAGATTTATTCGAGAATTTAGAAAAACGAAATGATGAAAGAAAATACTGAAATATTGAATTTCATTCAGTTCTCAGTTCGTATGACACAACAAATCCCATGGTTGTGGACGTTGAGAAAATCATATTTGAAAACCGCTATTTTAGCACTGAAAATGCGATTTTTGGTGCGGTGAGCGGATTCTAAAATTTTTGATGCGTATAGATAGGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>461 460 40 39</canonical_bands>
                <polymorphic_bands>499 461 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTCATTTTTGGTCTTTCAAC</pcr_primer_p1>
		<pcr_primer_p2>AGCGGGTTTGTGTCTAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTCATTTTTGGTCTTTCAACACAAGACAATCTTTCCAACATCATATCTATCAGGAAAACTTCATATCTTGTTAACCCAGATTTCAAAGAATTTTTATGTCTGTCTAGACACATCTGAATATTTTGAATTCCGCTTGCTAGTTCCAGCCGGGTTAAATCAGTTTTGCAATGAAACCTCAACACCTTTCGAATCCAGATTTTGATGCACATATTGGGATAGGGAATAGCCTATTTAGACACAAACCCGCT</canonical_amplicon>
		<polymorphic_amplicon>AATTCATTTTTGGTCTTTCAACACAAGACAATCTTTCCAACATCATATCTATCAGGAAAACTTCATATCTTGTTAACCCAGATTTCAAAGAATTTTTATGTCTGTCTAGACACATCTGAATATTTTGAATTCCGCTTGCTAGTTCCAGCCGGGTTAAATCAGTTTTRCAATGAAACCTCAACACCTTTCGAATCCAGATTTTGATGCACATATTGGGATAGGGAATAGCCTATTTAGACACAAACCCGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34121</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>884927</contig_pos>
        <strand>+</strand>
        <context>GGCGGTTTCA[A/G]CCCAGCTatt</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGGGATAGGGAATAGCCTATTTAGACACAAACCCGCTCGGCGGTTTCA</left_flank>
        <right_flank>CCCAGCTATTTTCGTTTCAGTACCAAATTCGCTGTTTCAGAGAAACAGCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGGGAGACCCCATCTTTGTTGAGTCGTCGGACACCGAAGACCAGGAGGCTGAAGATGATCAACAGGAGGACCCAGAAGGAGTTGACTCCGTAAAGGTCGAAGCTGAGAACTTTGTTGCGAGATTCCAAATTGCCAATCTGGATTCTTCGAAGCTCATCGAAAAGTTCATTGCCGATGTGTCCTCAAACGAAGGTAAATTTATACTTTATTGTAATTGAAGAAAAATAATTAGAAAAAATTCATTTTTGGTCTTTCAACACAAGACAATCTTTCCAACATCATATCTATCAGGAAAACTTCATATCTTGTTAACCCAGATTTCAAAGAATTTTTATGTCTGTCTAGACACATCTGAATATTTTGAATTCCGCTTGCTAGTTCCAGCCGGGTTAAATCAGTTTTGCAATGAAACCTCAACACCTTTCGAATCCAGATTTTGATGCACATATTGGGATAGGGAATAGCCTATTTAGACACAAACCCGCTCGGCGGTTTCAGCCCAGCTATTTTCGTTTCAGTACCAAATTCGCTGTTTCAGAGAAACAGCGCTTTTCAAATAAAAAAGATTTTTTCAAACCCTAGCACTATCCAGAACATTAAAATTGTTGTGGTCTACTTAAAATTGATTGAAATTTCATATTTCAGATATCTTCTGAAAAAAAAATTTTTTTCAATTTTTTGCCACGATTTTTCAGATTTATTCGAGAATTTAGAAAAACGAAATGATGAAAGAAAATACTGAAATATTGAATTTCATTCAGTTCTCAGTTCGTATGACACAACAAATCCCATGGTTGTGGACGTTGAGAAAATCATATTTGAAAACCGCTATTTTAGCACTGAAAATGCGATTTTTGGTGCGGTGAGCGGATTCTAAAATTTTTGATGCGTATAGATAGGCTGTTCTCCGCAAATTTCAAATTTCGTCAAAATTTGAGTTTACGAGGTGTTGAGGTTCTTTTGTAAAAAAATTTTGCATTTTAAAAAATCTCATGTGA</canonical>
            <polymorphic>TTTGGGAGACCCCATCTTTGTTGAGTCGTCGGACACCGAAGACCAGGAGGCTGAAGATGATCAACAGGAGGACCCAGAAGGAGTTGACTCCGTAAAGGTCGAAGCTGAGAACTTTGTTGCGAGATTCCAAATTGCCAATCTGGATTCTTCGAAGCTCATCGAAAAGTTCATTGCCGATGTGTCCTCAAACGAAGGTAAATTTATACTTTATTGTAATTGAAGAAAAATAATTAGAAAAAATTCATTTTTGGTCTTTCAACACAAGACAATCTTTCCAACATCATATCTATCAGGAAAACTTCATATCTTGTTAACCCAGATTTCAAAGAATTTTTATGTCTGTCTAGACACATCTGAATATTTTGAATTCCGCTTGCTAGTTCCAGCCGGGTTAAATCAGTTTTGCAATGAAACCTCAACACCTTTCGAATCCAGATTTTGATGCACATATTGGGATAGGGAATAGCCTATTTAGACACAAACCCGCTCGGCGGTTTCARCCCAGCTATTTTCGTTTCAGTACCAAATTCGCTGTTTCAGAGAAACAGCGCTTTTCAAATAAAAAAGATTTTTTCAAACCCTAGCACTATCCAGAACATTAAAATTGTTGTGGTCTACTTAAAATTGATTGAAATTTCATATTTCAGATATCTTCTGAAAAAAAAATTTTTTTCAATTTTTTGCCACGATTTTTCAGATTTATTCGAGAATTTAGAAAAACGAAATGATGAAAGAAAATACTGAAATATTGAATTTCATTCAGTTCTCAGTTCGTATGACACAACAAATCCCATGGTTGTGGACGTTGAGAAAATCATATTTGAAAACCGCTATTTTAGCACTGAAAATGCGATTTTTGGTGCGGTGAGCGGATTCTAAAATTTTTGATGCGTATAGATAGGCTGTTCTCCGCAAATTTCAAATTTCGTCAAAATTTGAGTTTACGAGGTGTTGAGGTTCTTTTGTAAAAAAATTTTGCATTTTAAAAAATCTCATGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>497 339 164</canonical_bands>
                <polymorphic_bands>836 164</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>397 232 98 80 54 50 50 34 5</canonical_bands>
                <polymorphic_bands>397 232 98 80 54 50 50 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATATTGGGATAGGGAATAGC</pcr_primer_p1>
		<pcr_primer_p2>TCGAATAAATCTGAAAAATCGT</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>CATATTGGGATAGGGAATAGCCTATTTAGACACAAACCCGCTCGGCGGTTTCAGCCCAGCTATTTTCGTTTCAGTACCAAATTCGCTGTTTCAGAGAAACAGCGCTTTTCAAATAAAAAAGATTTTTTCAAACCCTAGCACTATCCAGAACATTAAAATTGTTGTGGTCTACTTAAAATTGATTGAAATTTCATATTTCAGATATCTTCTGAAAAAAAAATTTTTTTCAATTTTTTGCCACGATTTTTCAGATTTATTCGA</canonical_amplicon>
		<polymorphic_amplicon>CATATTGGGATAGGGAATAGCCTATTTAGACACAAACCCGCTCGGCGGTTTCARCCCAGCTATTTTCGTTTCAGTACCAAATTCGCTGTTTCAGAGAAACAGCGCTTTTCAAATAAAAAAGATTTTTTCAAACCCTAGCACTATCCAGAACATTAAAATTGTTGTGGTCTACTTAAAATTGATTGAAATTTCATATTTCAGATATCTTCTGAAAAAAAAATTTTTTTCAATTTTTTGCCACGATTTTTCAGATTTATTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34122</snp_id>
        <super_contig>c008800781.Contig2</super_contig>
        <contig_pos>885000</contig_pos>
        <strand></strand>
        <context>aaaagatttt[T/C]tcaaacccta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCAAATTCGCTGTTTCAGAGAAACAGCGCTTTTCAAATAAAAAAGATTTT</left_flank>
        <right_flank>TCAAACCCTAGCACTATCCAGAACATTAAAATTGTTGTGGTCTACTTAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGAAGGAGTTGACTCCGTAAAGGTCGAAGCTGAGAACTTTGTTGCGAGATTCCAAATTGCCAATCTGGATTCTTCGAAGCTCATCGAAAAGTTCATTGCCGATGTGTCCTCAAACGAAGGTAAATTTATACTTTATTGTAATTGAAGAAAAATAATTAGAAAAAATTCATTTTTGGTCTTTCAACACAAGACAATCTTTCCAACATCATATCTATCAGGAAAACTTCATATCTTGTTAACCCAGATTTCAAAGAATTTTTATGTCTGTCTAGACACATCTGAATATTTTGAATTCCGCTTGCTAGTTCCAGCCGGGTTAAATCAGTTTTGCAATGAAACCTCAACACCTTTCGAATCCAGATTTTGATGCACATATTGGGATAGGGAATAGCCTATTTAGACACAAACCCGCTCGGCGGTTTCAGCCCAGCTATTTTCGTTTCAGTACCAAATTCGCTGTTTCAGAGAAACAGCGCTTTTCAAATAAAAAAGATTTTTTCAAACCCTAGCACTATCCAGAACATTAAAATTGTTGTGGTCTACTTAAAATTGATTGAAATTTCATATTTCAGATATCTTCTGAAAAAAAAATTTTTTTCAATTTTTTGCCACGATTTTTCAGATTTATTCGAGAATTTAGAAAAACGAAATGATGAAAGAAAATACTGAAATATTGAATTTCATTCAGTTCTCAGTTCGTATGACACAACAAATCCCATGGTTGTGGACGTTGAGAAAATCATATTTGAAAACCGCTATTTTAGCACTGAAAATGCGATTTTTGGTGCGGTGAGCGGATTCTAAAATTTTTGATGCGTATAGATAGGCTGTTCTCCGCAAATTTCAAATTTCGTCAAAATTTGAGTTTACGAGGTGTTGAGGTTCTTTTGTAAAAAAATTTTGCATTTTAAAAAATCTCATGTGATTTTTAACAAAAACTCAATCAATATATTTTTCAGCTCATGACACCAATGCTCTTCTCGACCTCGTCATCGACA</canonical>
            <polymorphic>CCAGAAGGAGTTGACTCCGTAAAGGTCGAAGCTGAGAACTTTGTTGCGAGATTCCAAATTGCCAATCTGGATTCTTCGAAGCTCATCGAAAAGTTCATTGCCGATGTGTCCTCAAACGAAGGTAAATTTATACTTTATTGTAATTGAAGAAAAATAATTAGAAAAAATTCATTTTTGGTCTTTCAACACAAGACAATCTTTCCAACATCATATCTATCAGGAAAACTTCATATCTTGTTAACCCAGATTTCAAAGAATTTTTATGTCTGTCTAGACACATCTGAATATTTTGAATTCCGCTTGCTAGTTCCAGCCGGGTTAAATCAGTTTTGCAATGAAACCTCAACACCTTTCGAATCCAGATTTTGATGCACATATTGGGATAGGGAATAGCCTATTTAGACACAAACCCGCTCGGCGGTTTCAGCCCAGCTATTTTCGTTTCAGTACCAAATTCGCTGTTTCAGAGAAACAGCGCTTTTCAAATAAAAAAGATTTTYTCAAACCCTAGCACTATCCAGAACATTAAAATTGTTGTGGTCTACTTAAAATTGATTGAAATTTCATATTTCAGATATCTTCTGAAAAAAAAATTTTTTTCAATTTTTTGCCACGATTTTTCAGATTTATTCGAGAATTTAGAAAAACGAAATGATGAAAGAAAATACTGAAATATTGAATTTCATTCAGTTCTCAGTTCGTATGACACAACAAATCCCATGGTTGTGGACGTTGAGAAAATCATATTTGAAAACCGCTATTTTAGCACTGAAAATGCGATTTTTGGTGCGGTGAGCGGATTCTAAAATTTTTGATGCGTATAGATAGGCTGTTCTCCGCAAATTTCAAATTTCGTCAAAATTTGAGTTTACGAGGTGTTGAGGTTCTTTTGTAAAAAAATTTTGCATTTTAAAAAATCTCATGTGATTTTTAACAAAAACTCAATCAATATATTTTTCAGCTCATGACACCAATGCTCTTCTCGACCTCGTCATCGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATATTGGGATAGGGAATAGC</pcr_primer_p1>
		<pcr_primer_p2>TCGAATAAATCTGAAAAATCGT</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>CATATTGGGATAGGGAATAGCCTATTTAGACACAAACCCGCTCGGCGGTTTCAGCCCAGCTATTTTCGTTTCAGTACCAAATTCGCTGTTTCAGAGAAACAGCGCTTTTCAAATAAAAAAGATTTTTTCAAACCCTAGCACTATCCAGAACATTAAAATTGTTGTGGTCTACTTAAAATTGATTGAAATTTCATATTTCAGATATCTTCTGAAAAAAAAATTTTTTTCAATTTTTTGCCACGATTTTTCAGATTTATTCGA</canonical_amplicon>
		<polymorphic_amplicon>CATATTGGGATAGGGAATAGCCTATTTAGACACAAACCCGCTCGGCGGTTTCAGCCCAGCTATTTTCGTTTCAGTACCAAATTCGCTGTTTCAGAGAAACAGCGCTTTTCAAATAAAAAAGATTTTYTCAAACCCTAGCACTATCCAGAACATTAAAATTGTTGTGGTCTACTTAAAATTGATTGAAATTTCATATTTCAGATATCTTCTGAAAAAAAAATTTTTTTCAATTTTTTGCCACGATTTTTCAGATTTATTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34123</snp_id>
        <super_contig>c008800974.Contig1</super_contig>
        <contig_pos>806</contig_pos>
        <strand>+</strand>
        <context>GTCCCCCCAC[C/T]TTTAAGACTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCAC</left_flank>
        <right_flank>TTTAAGACTTCCTATAGAAATATTAGAGATAAGAACACGATTTTTAAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAGGAATTTTTTTTGAATTTTTTCTTTATTTTTATGTCAATCTACATGCATTTCTGCACATTTTGATGCAATAAAAAATTTCACCGTACACCACCTTTAAAATTATGAAAATCTGAAAACCTCAGAATTTCAAATCAAAATTTAGAAATCCTAAGAAATTGGGGAGTTCAAAACGAATTTAAAAAAAAAGAAAGAAGTTTAGAAATTTCAAATTTTAAAATCATAATGTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAGACTTCCTATAGAAATATTAGAGATAAGAACACGATTTTTAAATAGATCAATTCTTAAAATAGGATTTTCCTCTTTTTTATCTTATAAATTAATACATTTTTTTCTGAGTAAATAAAGAAAAAAATACGAGAAAAGCACACATTTTCTGCTCCTTTTTGAGCACAAAAAAGGAGAAAAAAGAGGGTGTAGATAAGGCGAGAGAGTGAGAGACGCAGACACGAAACTTTTTTTGGAGCAAAGGCGAAAAAAAAGGAAGAAGAAGATGGGGGTGAAGCCATGGAGAAGTGTATGGAGAAAAAAAAAGAGGAGAAGAGGAAAAAAAAAGAAAACATTCCGAGAAAAACGAAGAATGAATGAGAGGGATTTGAGGGAGATTTATTAGGGTGTCCGGGGACAAAAAATGGGAATTTTAATGAAATTCAAAATCCGAAAATTCCGAAATCCGAAAGCCAGAAATTCAGAAGTTCGATAACTCTGGCTTTTGAAATTCCGAA</canonical>
            <polymorphic>TGAAGGAATTTTTTTTGAATTTTTTCTTTATTTTTATGTCAATCTACATGCATTTCTGCACATTTTGATGCAATAAAAAATTTCACCGTACACCACCTTTAAAATTATGAAAATCTGAAAACCTCAGAATTTCAAATCAAAATTTAGAAATCCTAAGAAATTGGGGAGTTCAAAACGAATTTAAAAAAAAAGAAAGAAGTTTAGAAATTTCAAATTTTAAAATCATAATGTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACYTTTAAGACTTCCTATAGAAATATTAGAGATAAGAACACGATTTTTAAATAGATCAATTCTTAAAATAGGATTTTCCTCTTTTTTATCTTATAAATTAATACATTTTTTTCTGAGTAAATAAAGAAAAAAATACGAGAAAAGCACACATTTTCTGCTCCTTTTTGAGCACAAAAAAGGAGAAAAAAGAGGGTGTAGATAAGGCGAGAGAGTGAGAGACGCAGACACGAAACTTTTTTTGGAGCAAAGGCGAAAAAAAAGGAAGAAGAAGATGGGGGTGAAGCCATGGAGAAGTGTATGGAGAAAAAAAAAGAGGAGAAGAGGAAAAAAAAAGAAAACATTCCGAGAAAAACGAAGAATGAATGAGAGGGATTTGAGGGAGATTTATTAGGGTGTCCGGGGACAAAAAATGGGAATTTTAATGAAATTCAAAATCCGAAAATTCCGAAATCCGAAAGCCAGAAATTCAGAAGTTCGATAACTCTGGCTTTTGAAATTCCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACAACGCTTAATGTCACTCTG</pcr_primer_p1>
		<pcr_primer_p2>TTGATCTATTTAAAAATCGTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAGACTTCCTATAGAAATATTAGAGATAAGAACACGATTTTTAAATAGATCAA</canonical_amplicon>
		<polymorphic_amplicon>TACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACYTTTAAGACTTCCTATAGAAATATTAGAGATAAGAACACGATTTTTAAATAGATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34124</snp_id>
        <super_contig>c008800974.Contig1</super_contig>
        <contig_pos>17942</contig_pos>
        <strand>+</strand>
        <context>GGAACAGGTG[C/T]AAAAAAACTG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAAATTGAAAAAAAAAATTATTTGACTACTAAAATTATGGAACAGGTG</left_flank>
        <right_flank>AAAAAAACTGAAAATTTGGGTGGCTTTCTACCAGTATCTTTTTCCTAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAAAATATCAATCAGAAATATTCGAGTCATATGACATTTGTGACGAAAAGATAAAAAGTACAAATTCTCATATCACATACAAAATCAGTGAGCCTATTGATAAGAATTCTTTTGCTCACCGACTTCTGATTTTCTTATTTTTCTAATTTTCATGCATATGCATACATATTTTTAGGGGCTAAAAAGGGACCGAAGAAGGCGAAAATGAATTGGAAAGTAATTGGTTTTTGCTGTGTTTCCCAAGGAAAAGAGAGAATAAGAAAAAGTGGGCGGAGCCTAATTTTCTGGAGGGGAGAAGGGGAAATCTGATAACAGAGAAGGGGAAAGAAAATGAGATTTTAGGAAGGAGATTAGAATTTTCTGGAATTTTCCGGAGAAAATAATGAAATTGAACTTGAGAGATTGCTAGGTACAAATTTAGGAATCTTCGGAATCTTCGGAAAAATCGAAAAATTGAAAAAAAAAATTATTTGACTACTAAAATTATGGAACAGGTGAAAAAAAACTGAAAATTTGGGTGGCTTTCTACCAGTATCTTTTTCCTAAAATGACGTTTTTTTGCATTCACTGTAAGAGACGCAGAGAAACCAGACACGCTAACTTGTCTGCGTCTCCTCTCCCCCTCTTTCTCTCAACGTCGACAGGACTATGCCAACTTCAAACGGTTATATCTCGGCTGGCAAAAAAGCTATCAAAAAGTTAAAAACTACAAAAATGTGTAAAATTAAATTTTACATATTTTTGTTGTTAAAAACTTTTTTGTAGCTTCTTTGATTTTCGAGATATGAGTGTTTGAAGTTGTAGAGGGCACAGAGAGGTGAGAGAGAGAGAGTTTTTATTGATGAGAGAGTGCAGAGAAAGAGGGTTTTTCACTAAAAAATTGTTGAAATACAGATCTGAAACAACATAAAAAAATTTATTTTTTCAAGTTTTCCAAAAAAAACTTTTTCGATATCTTTCGAAAACTTTGAAATTGTAAATTTAAAAATTGTAGAATT</canonical>
            <polymorphic>CTCAAAATATCAATCAGAAATATTCGAGTCATATGACATTTGTGACGAAAAGATAAAAAGTACAAATTCTCATATCACATACAAAATCAGTGAGCCTATTGATAAGAATTCTTTTGCTCACCGACTTCTGATTTTCTTATTTTTCTAATTTTCATGCATATGCATACATATTTTTAGGGGCTAAAAAGGGACCGAAGAAGGCGAAAATGAATTGGAAAGTAATTGGTTTTTGCTGTGTTTCCCAAGGAAAAGAGAGAATAAGAAAAAGTGGGCGGAGCCTAATTTTCTGGAGGGGAGAAGGGGAAATCTGATAACAGAGAAGGGGAAAGAAAATGAGATTTTAGGAAGGAGATTAGAATTTTCTGGAATTTTCCGGAGAAAATAATGAAATTGAACTTGAGAGATTGCTAGGTACAAATTTAGGAATCTTCGGAATCTTCGGAAAAATCGAAAAATTGAAAAAAAAAATTATTTGACTACTAAAATTATGGAACAGGTGYAAAAAAACTGAAAATTTGGGTGGCTTTCTACCAGTATCTTTTTCCTAAAATGACGTTTTTTTGCATTCACTGTAAGAGACGCAGAGAAACCAGACACGCTAACTTGTCTGCGTCTCCTCTCCCCCTCTTTCTCTCAACGTCGACAGGACTATGCCAACTTCAAACGGTTATATCTCGGCTGGCAAAAAAGCTATCAAAAAGTTAAAAACTACAAAAATGTGTAAAATTAAATTTTACATATTTTTGTTGTTAAAAACTTTTTTGTAGCTTCTTTGATTTTCGAGATATGAGTGTTTGAAGTTGTAGAGGGCACAGAGAGGTGAGAGAGAGAGAGTTTTTATTGATGAGAGAGTGCAGAGAAAGAGGGTTTTTCACTAAAAAATTGTTGAAATACAGATCTGAAACAACATAAAAAAATTTATTTTTTCAAGTTTTCCAAAAAAAACTTTTTCGATATCTTTCGAAAACTTTGAAATTGTAAATTTAAAAATTGTAGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAAATCGAAAAATTGAAA</pcr_primer_p1>
		<pcr_primer_p2>AATAAAAACTCTCTCTCTCTCACC</pcr_primer_p2>
		<pcr_amplicon_size>402</pcr_amplicon_size>
		<canonical_amplicon>GGAAAAATCGAAAAATTGAAAAAAAAAATTATTTGACTACTAAAATTATGGAACAGGTGAAAAAAAACTGAAAATTTGGGTGGCTTTCTACCAGTATCTTTTTCCTAAAATGACGTTTTTTTGCATTCACTGTAAGAGACGCAGAGAAACCAGACACGCTAACTTGTCTGCGTCTCCTCTCCCCCTCTTTCTCTCAACGTCGACAGGACTATGCCAACTTCAAACGGTTATATCTCGGCTGGCAAAAAAGCTATCAAAAAGTTAAAAACTACAAAAATGTGTAAAATTAAATTTTACATATTTTTGTTGTTAAAAACTTTTTTGTAGCTTCTTTGATTTTCGAGATATGAGTGTTTGAAGTTGTAGAGGGCACAGAGAGGTGAGAGAGAGAGAGTTTTTATT</canonical_amplicon>
		<polymorphic_amplicon>GGAAAAATCGAAAAATTGAAAAAAAAAATTATTTGACTACTAAAATTATGGAACAGGTGYAAAAAAACTGAAAATTTGGGTGGCTTTCTACCAGTATCTTTTTCCTAAAATGACGTTTTTTTGCATTCACTGTAAGAGACGCAGAGAAACCAGACACGCTAACTTGTCTGCGTCTCCTCTCCCCCTCTTTCTCTCAACGTCGACAGGACTATGCCAACTTCAAACGGTTATATCTCGGCTGGCAAAAAAGCTATCAAAAAGTTAAAAACTACAAAAATGTGTAAAATTAAATTTTACATATTTTTGTTGTTAAAAACTTTTTTGTAGCTTCTTTGATTTTCGAGATATGAGTGTTTGAAGTTGTAGAGGGCACAGAGAGGTGAGAGAGAGAGAGTTTTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34125</snp_id>
        <super_contig>c008800974.Contig1</super_contig>
        <contig_pos>18146</contig_pos>
        <strand></strand>
        <context>tcaaaaagtt[A/G]aaaactacaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAACTTCAAACGGTTATATCTCGGCTGGCAAAAAAGCTATCAAAAAGTT</left_flank>
        <right_flank>AAAACTACAAAAATGTGTAAAATTAAATTTTACATATTTTTGTTGTTAAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATGAATTGGAAAGTAATTGGTTTTTGCTGTGTTTCCCAAGGAAAAGAGAGAATAAGAAAAAGTGGGCGGAGCCTAATTTTCTGGAGGGGAGAAGGGGAAATCTGATAACAGAGAAGGGGAAAGAAAATGAGATTTTAGGAAGGAGATTAGAATTTTCTGGAATTTTCCGGAGAAAATAATGAAATTGAACTTGAGAGATTGCTAGGTACAAATTTAGGAATCTTCGGAATCTTCGGAAAAATCGAAAAATTGAAAAAAAAAATTATTTGACTACTAAAATTATGGAACAGGTGAAAAAAAACTGAAAATTTGGGTGGCTTTCTACCAGTATCTTTTTCCTAAAATGACGTTTTTTTGCATTCACTGTAAGAGACGCAGAGAAACCAGACACGCTAACTTGTCTGCGTCTCCTCTCCCCCTCTTTCTCTCAACGTCGACAGGACTATGCCAACTTCAAACGGTTATATCTCGGCTGGCAAAAAAGCTATCAAAAAGTTAAAAACTACAAAAATGTGTAAAATTAAATTTTACATATTTTTGTTGTTAAAAACTTTTTTGTAGCTTCTTTGATTTTCGAGATATGAGTGTTTGAAGTTGTAGAGGGCACAGAGAGGTGAGAGAGAGAGAGTTTTTATTGATGAGAGAGTGCAGAGAAAGAGGGTTTTTCACTAAAAAATTGTTGAAATACAGATCTGAAACAACATAAAAAAATTTATTTTTTCAAGTTTTCCAAAAAAAACTTTTTCGATATCTTTCGAAAACTTTGAAATTGTAAATTTAAAAATTGTAGAATTGTGGAATTTTAGAATTTTAGAATTTTTCGAAAATTTCAATTTCTTCAAAAAATTCCAATTGATCGAAAAACCCAAAATTCATAACAACCAAAAAAACCCATGAAAAAATGACGAATGACCAAAAATATGCTTTTTTAGGATTCGGATAAGAAAAAGAAGGAAAAAAAAAGAAGAAAAAGAGAAATAGGAGAAGAAGAAGGTGCT</canonical>
            <polymorphic>AAATGAATTGGAAAGTAATTGGTTTTTGCTGTGTTTCCCAAGGAAAAGAGAGAATAAGAAAAAGTGGGCGGAGCCTAATTTTCTGGAGGGGAGAAGGGGAAATCTGATAACAGAGAAGGGGAAAGAAAATGAGATTTTAGGAAGGAGATTAGAATTTTCTGGAATTTTCCGGAGAAAATAATGAAATTGAACTTGAGAGATTGCTAGGTACAAATTTAGGAATCTTCGGAATCTTCGGAAAAATCGAAAAATTGAAAAAAAAAATTATTTGACTACTAAAATTATGGAACAGGTGAAAAAAAACTGAAAATTTGGGTGGCTTTCTACCAGTATCTTTTTCCTAAAATGACGTTTTTTTGCATTCACTGTAAGAGACGCAGAGAAACCAGACACGCTAACTTGTCTGCGTCTCCTCTCCCCCTCTTTCTCTCAACGTCGACAGGACTATGCCAACTTCAAACGGTTATATCTCGGCTGGCAAAAAAGCTATCAAAAAGTTRAAAACTACAAAAATGTGTAAAATTAAATTTTACATATTTTTGTTGTTAAAAACTTTTTTGTAGCTTCTTTGATTTTCGAGATATGAGTGTTTGAAGTTGTAGAGGGCACAGAGAGGTGAGAGAGAGAGAGTTTTTATTGATGAGAGAGTGCAGAGAAAGAGGGTTTTTCACTAAAAAATTGTTGAAATACAGATCTGAAACAACATAAAAAAATTTATTTTTTCAAGTTTTCCAAAAAAAACTTTTTCGATATCTTTCGAAAACTTTGAAATTGTAAATTTAAAAATTGTAGAATTGTGGAATTTTAGAATTTTAGAATTTTTCGAAAATTTCAATTTCTTCAAAAAATTCCAATTGATCGAAAAACCCAAAATTCATAACAACCAAAAAAACCCATGAAAAAATGACGAATGACCAAAAATATGCTTTTTTAGGATTCGGATAAGAAAAAGAAGGAAAAAAAAAGAAGAAAAAGAGAAATAGGAGAAGAAGAAGGTGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>498 234 220 25 23</canonical_bands>
                <polymorphic_bands>523 234 220 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCTTTCTACCAGTATCTTTTTC</pcr_primer_p1>
		<pcr_primer_p2>AATAAAAACTCTCTCTCTCTCACC</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>GGCTTTCTACCAGTATCTTTTTCCTAAAATGACGTTTTTTTGCATTCACTGTAAGAGACGCAGAGAAACCAGACACGCTAACTTGTCTGCGTCTCCTCTCCCCCTCTTTCTCTCAACGTCGACAGGACTATGCCAACTTCAAACGGTTATATCTCGGCTGGCAAAAAAGCTATCAAAAAGTTAAAAACTACAAAAATGTGTAAAATTAAATTTTACATATTTTTGTTGTTAAAAACTTTTTTGTAGCTTCTTTGATTTTCGAGATATGAGTGTTTGAAGTTGTAGAGGGCACAGAGAGGTGAGAGAGAGAGAGTTTTTATT</canonical_amplicon>
		<polymorphic_amplicon>GGCTTTCTACCAGTATCTTTTTCCTAAAATGACGTTTTTTTGCATTCACTGTAAGAGACGCAGAGAAACCAGACACGCTAACTTGTCTGCGTCTCCTCTCCCCCTCTTTCTCTCAACGTCGACAGGACTATGCCAACTTCAAACGGTTATATCTCGGCTGGCAAAAAAGCTATCAAAAAGTTRAAAACTACAAAAATGTGTAAAATTAAATTTTACATATTTTTGTTGTTAAAAACTTTTTTGTAGCTTCTTTGATTTTCGAGATATGAGTGTTTGAAGTTGTAGAGGGCACAGAGAGGTGAGAGAGAGAGAGTTTTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34126</snp_id>
        <super_contig>c008800974.Contig1</super_contig>
        <contig_pos>19362</contig_pos>
        <strand>+</strand>
        <context>AGATCTCAGC[A/C]CATAGAAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACTTTTTTCATTACAAAAAATGGCTTTCTAGACCCCTAGAGATCTCAGC</left_flank>
        <right_flank>CATAGAAATAACTAAATTGAATATATACATTTTTCGGGTGATTTTTCTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAAATTTCTGAAAAAATTCAGAAATTCAAGAAAAAATTCAGAAATTCAAGAAAAAATAGAAAATTGGGGACTTTAAAAATTAGGGAATAAGAAGAAAAAGAAGAGGAAGAATATAATTCAATTTCAAATTCTTCTTTTTGGGTGGTAAGGAAAATAAGGAAAATGAATGAAACAGAAGAAGAAGGCATATTTTTGTGGGGACCAATAGAATAAGAAGAAGAAGAGAAAGAAGAAAGAAATACTAATTATTAGTTGTTGGTGGTGGTGTGTCGTTTCGAGTTATTACTCTCTTACTCTCCTTTTCCTTATTATTATTCATTATTATTAGTTGTGAATTTGTAAAAAGGAAAAGAAGAAGACGAGGAATTTTGAAGAATTTAGGAATTTTAAACAAGATCTAGGGAGCAAAAAAATAGGTCTTGTTTTTTTCTCGATTCCTAGAAACTGAACTTTTTTCATTACAAAAAATGGCTTTCTAGACCCCTAGAGATCTCAGCCCATAGAAATAACTAAATTGAATATATACATTTTTCGGGTGATTTTTCTAATTTTTTTAAATTTTCAAAATCTTCAATTCGTATAACATCTTGTTTCCTTTGTTTTCTTCTCCAAAACGGACTTTAAACCAACTCAAATGATCGATTTTGAGCCGAGTTACGCGCTTTTGGAGTTTGGAGATACGCAGAGAAACAGACACTCTAGCTTCTTTGCGCCCTCCCTCCTTGTCGTGTTGTTTCGCGGCGCCCGTCGGCCCGGCCCGGCCCTGGCCCGGCCCGTCCGGCCCGTCTGCAAACTGTAAAAAATTTCCACTCCGAATTTTCCACATGTATGTTTGGGACTGTAACTCAGCTCAAACTCAACCGATTTGAATGAAAGTTTTTTATTCACATTATCAATTACCCACTTGAGGTTTTAACTGTAAATTCAAATTCGCTAAAAATTATTGTCCACGAGGACTACACGGATGAAATACACTGAAAATAAGTTAAAATAGCTTA</canonical>
            <polymorphic>CAGAAATTTCTGAAAAAATTCAGAAATTCAAGAAAAAATTCAGAAATTCAAGAAAAAATAGAAAATTGGGGACTTTAAAAATTAGGGAATAAGAAGAAAAAGAAGAGGAAGAATATAATTCAATTTCAAATTCTTCTTTTTGGGTGGTAAGGAAAATAAGGAAAATGAATGAAACAGAAGAAGAAGGCATATTTTTGTGGGGACCAATAGAATAAGAAGAAGAAGAGAAAGAAGAAAGAAATACTAATTATTAGTTGTTGGTGGTGGTGTGTCGTTTCGAGTTATTACTCTCTTACTCTCCTTTTCCTTATTATTATTCATTATTATTAGTTGTGAATTTGTAAAAAGGAAAAGAAGAAGACGAGGAATTTTGAAGAATTTAGGAATTTTAAACAAGATCTAGGGAGCAAAAAAATAGGTCTTGTTTTTTTCTCGATTCCTAGAAACTGAACTTTTTTCATTACAAAAAATGGCTTTCTAGACCCCTAGAGATCTCAGCMCATAGAAATAACTAAATTGAATATATACATTTTTCGGGTGATTTTTCTAATTTTTTTAAATTTTCAAAATCTTCAATTCGTATAACATCTTGTTTCCTTTGTTTTCTTCTCCAAAACGGACTTTAAACCAACTCAAATGATCGATTTTGAGCCGAGTTACGCGCTTTTGGAGTTTGGAGATACGCAGAGAAACAGACACTCTAGCTTCTTTGCGCCCTCCCTCCTTGTCGTGTTGTTTCGCGGCGCCCGTCGGCCCGGCCCGGCCCTGGCCCGGCCCGTCCGGCCCGTCTGCAAACTGTAAAAAATTTCCACTCCGAATTTTCCACATGTATGTTTGGGACTGTAACTCAGCTCAAACTCAACCGATTTGAATGAAAGTTTTTTATTCACATTATCAATTACCCACTTGAGGTTTTAACTGTAAATTCAAATTCGCTAAAAATTATTGTCCACGAGGACTACACGGATGAAATACACTGAAAATAAGTTAAAATAGCTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>473 153 145 68 53 49 25 9 6 5 5 5 4</canonical_bands>
                <polymorphic_bands>473 178 145 68 53 49 9 6 5 5 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGATTCCTAGAAACTGAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>CCAAACATACATGTGGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>405</pcr_amplicon_size>
		<canonical_amplicon>CGATTCCTAGAAACTGAACTTTTTTCATTACAAAAAATGGCTTTCTAGACCCCTAGAGATCTCAGCCCATAGAAATAACTAAATTGAATATATACATTTTTCGGGTGATTTTTCTAATTTTTTTAAATTTTCAAAATCTTCAATTCGTATAACATCTTGTTTCCTTTGTTTTCTTCTCCAAAACGGACTTTAAACCAACTCAAATGATCGATTTTGAGCCGAGTTACGCGCTTTTGGAGTTTGGAGATACGCAGAGAAACAGACACTCTAGCTTCTTTGCGCCCTCCCTCCTTGTCGTGTTGTTTCGCGGCGCCCGTCGGCCCGGCCCGGCCCTGGCCCGGCCCGTCCGGCCCGTCTGCAAACTGTAAAAAATTTCCACTCCGAATTTTCCACATGTATGTTTGG</canonical_amplicon>
		<polymorphic_amplicon>CGATTCCTAGAAACTGAACTTTTTTCATTACAAAAAATGGCTTTCTAGACCCCTAGAGATCTCAGCMCATAGAAATAACTAAATTGAATATATACATTTTTCGGGTGATTTTTCTAATTTTTTTAAATTTTCAAAATCTTCAATTCGTATAACATCTTGTTTCCTTTGTTTTCTTCTCCAAAACGGACTTTAAACCAACTCAAATGATCGATTTTGAGCCGAGTTACGCGCTTTTGGAGTTTGGAGATACGCAGAGAAACAGACACTCTAGCTTCTTTGCGCCCTCCCTCCTTGTCGTGTTGTTTCGCGGCGCCCGTCGGCCCGGCCCGGCCCTGGCCCGGCCCGTCCGGCCCGTCTGCAAACTGTAAAAAATTTCCACTCCGAATTTTCCACATGTATGTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34127</snp_id>
        <super_contig>c008800974.Contig1</super_contig>
        <contig_pos>19390</contig_pos>
        <strand>+</strand>
        <context>TGAATATATA[A/G]ATTTTTCGGG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAGACCCCTAGAGATCTCAGCCCATAGAAATAACTAAATTGAATATATA</left_flank>
        <right_flank>ATTTTTCGGGTGATTTTTCTAATTTTTTTAAATTTTCAAAATCTTCAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGAAAAAATTCAGAAATTCAAGAAAAAATAGAAAATTGGGGACTTTAAAAATTAGGGAATAAGAAGAAAAAGAAGAGGAAGAATATAATTCAATTTCAAATTCTTCTTTTTGGGTGGTAAGGAAAATAAGGAAAATGAATGAAACAGAAGAAGAAGGCATATTTTTGTGGGGACCAATAGAATAAGAAGAAGAAGAGAAAGAAGAAAGAAATACTAATTATTAGTTGTTGGTGGTGGTGTGTCGTTTCGAGTTATTACTCTCTTACTCTCCTTTTCCTTATTATTATTCATTATTATTAGTTGTGAATTTGTAAAAAGGAAAAGAAGAAGACGAGGAATTTTGAAGAATTTAGGAATTTTAAACAAGATCTAGGGAGCAAAAAAATAGGTCTTGTTTTTTTCTCGATTCCTAGAAACTGAACTTTTTTCATTACAAAAAATGGCTTTCTAGACCCCTAGAGATCTCAGCCCATAGAAATAACTAAATTGAATATATACATTTTTCGGGTGATTTTTCTAATTTTTTTAAATTTTCAAAATCTTCAATTCGTATAACATCTTGTTTCCTTTGTTTTCTTCTCCAAAACGGACTTTAAACCAACTCAAATGATCGATTTTGAGCCGAGTTACGCGCTTTTGGAGTTTGGAGATACGCAGAGAAACAGACACTCTAGCTTCTTTGCGCCCTCCCTCCTTGTCGTGTTGTTTCGCGGCGCCCGTCGGCCCGGCCCGGCCCTGGCCCGGCCCGTCCGGCCCGTCTGCAAACTGTAAAAAATTTCCACTCCGAATTTTCCACATGTATGTTTGGGACTGTAACTCAGCTCAAACTCAACCGATTTGAATGAAAGTTTTTTATTCACATTATCAATTACCCACTTGAGGTTTTAACTGTAAATTCAAATTCGCTAAAAATTATTGTCCACGAGGACTACACGGATGAAATACACTGAAAATAAGTTAAAATAGCTTAGAACACGCTTGAAAACAGCAAAAATCGC</canonical>
            <polymorphic>CAAGAAAAAATTCAGAAATTCAAGAAAAAATAGAAAATTGGGGACTTTAAAAATTAGGGAATAAGAAGAAAAAGAAGAGGAAGAATATAATTCAATTTCAAATTCTTCTTTTTGGGTGGTAAGGAAAATAAGGAAAATGAATGAAACAGAAGAAGAAGGCATATTTTTGTGGGGACCAATAGAATAAGAAGAAGAAGAGAAAGAAGAAAGAAATACTAATTATTAGTTGTTGGTGGTGGTGTGTCGTTTCGAGTTATTACTCTCTTACTCTCCTTTTCCTTATTATTATTCATTATTATTAGTTGTGAATTTGTAAAAAGGAAAAGAAGAAGACGAGGAATTTTGAAGAATTTAGGAATTTTAAACAAGATCTAGGGAGCAAAAAAATAGGTCTTGTTTTTTTCTCGATTCCTAGAAACTGAACTTTTTTCATTACAAAAAATGGCTTTCTAGACCCCTAGAGATCTCAGCCCATAGAAATAACTAAATTGAATATATARATTTTTCGGGTGATTTTTCTAATTTTTTTAAATTTTCAAAATCTTCAATTCGTATAACATCTTGTTTCCTTTGTTTTCTTCTCCAAAACGGACTTTAAACCAACTCAAATGATCGATTTTGAGCCGAGTTACGCGCTTTTGGAGTTTGGAGATACGCAGAGAAACAGACACTCTAGCTTCTTTGCGCCCTCCCTCCTTGTCGTGTTGTTTCGCGGCGCCCGTCGGCCCGGCCCGGCCCTGGCCCGGCCCGTCCGGCCCGTCTGCAAACTGTAAAAAATTTCCACTCCGAATTTTCCACATGTATGTTTGGGACTGTAACTCAGCTCAAACTCAACCGATTTGAATGAAAGTTTTTTATTCACATTATCAATTACCCACTTGAGGTTTTAACTGTAAATTCAAATTCGCTAAAAATTATTGTCCACGAGGACTACACGGATGAAATACACTGAAAATAAGTTAAAATAGCTTAGAACACGCTTGAAAACAGCAAAAATCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATTCCTAGAAACTGAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>CCAAACATACATGTGGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>405</pcr_amplicon_size>
		<canonical_amplicon>CGATTCCTAGAAACTGAACTTTTTTCATTACAAAAAATGGCTTTCTAGACCCCTAGAGATCTCAGCCCATAGAAATAACTAAATTGAATATATACATTTTTCGGGTGATTTTTCTAATTTTTTTAAATTTTCAAAATCTTCAATTCGTATAACATCTTGTTTCCTTTGTTTTCTTCTCCAAAACGGACTTTAAACCAACTCAAATGATCGATTTTGAGCCGAGTTACGCGCTTTTGGAGTTTGGAGATACGCAGAGAAACAGACACTCTAGCTTCTTTGCGCCCTCCCTCCTTGTCGTGTTGTTTCGCGGCGCCCGTCGGCCCGGCCCGGCCCTGGCCCGGCCCGTCCGGCCCGTCTGCAAACTGTAAAAAATTTCCACTCCGAATTTTCCACATGTATGTTTGG</canonical_amplicon>
		<polymorphic_amplicon>CGATTCCTAGAAACTGAACTTTTTTCATTACAAAAAATGGCTTTCTAGACCCCTAGAGATCTCAGCCCATAGAAATAACTAAATTGAATATATARATTTTTCGGGTGATTTTTCTAATTTTTTTAAATTTTCAAAATCTTCAATTCGTATAACATCTTGTTTCCTTTGTTTTCTTCTCCAAAACGGACTTTAAACCAACTCAAATGATCGATTTTGAGCCGAGTTACGCGCTTTTGGAGTTTGGAGATACGCAGAGAAACAGACACTCTAGCTTCTTTGCGCCCTCCCTCCTTGTCGTGTTGTTTCGCGGCGCCCGTCGGCCCGGCCCGGCCCTGGCCCGGCCCGTCCGGCCCGTCTGCAAACTGTAAAAAATTTCCACTCCGAATTTTCCACATGTATGTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34128</snp_id>
        <super_contig>c008900855.Contig2</super_contig>
        <contig_pos>42214</contig_pos>
        <strand>+</strand>
        <context>GCGTTATTCG[C/T]GCCGTGGAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATCCTGGTACGCTCCAAATTAGCCATCATCGTTTTTTCGCGTTATTCG</left_flank>
        <right_flank>GCCGTGGAGGATGCTAGGTCGATATTTGCAATATTGCCACTGGAAAACGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAGAGCTTTGATTAAGGTCAAAATTTTGAGAAATACTATGCAATCCGTCTCCAAATCCGTGAAATTCCTAAAATTCGTAAACGTAAAATCACATCCCTGTAACTCCCACTTCGTTCCGAGACCAGCTCATGAAAAACGAGACGACGTTGAGCATAGTAGAGAAAATGACCATACCGACATACACATATAACTGATTTTTCAACTCGTTTAAATCACCTCTATTTCGAAAAAGACAGTTGGCCATTATGTTGCCGTTTGGACCGTCACAAGTCATGTAGGCGCATTTTCACAGAACTCATCCTTAACCTCATTGAAATCCAACCACCCACGTTTTCTTCTCCTAGATTTCTTATTTGAATTTTTGGAATGTTTCTCAGAATCTCCTCCACATTTCTTTGTTGCTGTACCGGCACTACATAGACTTCGCAACGTGCTGCCCATTCGACACTAATCCTGGTACGCTCCAAATTAGCCATCATCGTTTTTTCGCGTTATTCGTGCCGTGGAGGATGCTAGGTCGATATTTGCAATATTGCCACTGGAAAACGAGGAGTAGAGTATAGTTACGAAATTTTCAAAATCAATAAAAATGAGACCAAACCCTTCCAACAGTGATGATTTTCCAACTTAGCTCTGTATACGCAGCATATAGATTTTTATTGAATTCAAAAAGTTTCTGAAATTTTCAATAGGGTCAAAAGCTTTTAAAAATGTCGAAAAGTCTACGTAGAACCCTAGCGGCGATACGTTGCTTCGTGATCCTAGAAACCCTTTTGGAATCGTTAAATCTGACAAAGTATGCAGCTTTAAAACGCGGCCCCAGATCTTGTTAGTTTCATTAATTAGAATGTTTTCGAATTTTTCTAAATTCCCCACGCCTTGATCCCTTATGATCACTCACATGTGCTTGCGTAAATCTCTTCGGTAGATTCATGTAGTGGAGCCATCTTGACCAATTCGTGACATTTGGGAGAGATATGCTAGAGAAGTGCATGGATT</canonical>
            <polymorphic>CAAGAGCTTTGATTAAGGTCAAAATTTTGAGAAATACTATGCAATCCGTCTCCAAATCCGTGAAATTCCTAAAATTCGTAAACGTAAAATCACATCCCTGTAACTCCCACTTCGTTCCGAGACCAGCTCATGAAAAACGAGACGACGTTGAGCATAGTAGAGAAAATGACCATACCGACATACACATATAACTGATTTTTCAACTCGTTTAAATCACCTCTATTTCGAAAAAGACAGTTGGCCATTATGTTGCCGTTTGGACCGTCACAAGTCATGTAGGCGCATTTTCACAGAACTCATCCTTAACCTCATTGAAATCCAACCACCCACGTTTTCTTCTCCTAGATTTCTTATTTGAATTTTTGGAATGTTTCTCAGAATCTCCTCCACATTTCTTTGTTGCTGTACCGGCACTACATAGACTTCGCAACGTGCTGCCCATTCGACACTAATCCTGGTACGCTCCAAATTAGCCATCATCGTTTTTTCGCGTTATTCGYGCCGTGGAGGATGCTAGGTCGATATTTGCAATATTGCCACTGGAAAACGAGGAGTAGAGTATAGTTACGAAATTTTCAAAATCAATAAAAATGAGACCAAACCCTTCCAACAGTGATGATTTTCCAACTTAGCTCTGTATACGCAGCATATAGATTTTTATTGAATTCAAAAAGTTTCTGAAATTTTCAATAGGGTCAAAAGCTTTTAAAAATGTCGAAAAGTCTACGTAGAACCCTAGCGGCGATACGTTGCTTCGTGATCCTAGAAACCCTTTTGGAATCGTTAAATCTGACAAAGTATGCAGCTTTAAAACGCGGCCCCAGATCTTGTTAGTTTCATTAATTAGAATGTTTTCGAATTTTTCTAAATTCCCCACGCCTTGATCCCTTATGATCACTCACATGTGCTTGCGTAAATCTCTTCGGTAGATTCATGTAGTGGAGCCATCTTGACCAATTCGTGACATTTGGGAGAGATATGCTAGAGAAGTGCATGGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>144 117 76 75 62 60 53 51 35 34 33 32 30 29 24 23 22 21 21 17 14 8 6 5 4 4</canonical_bands>
                <polymorphic_bands>144 117 76 75 62 60 58 51 35 34 33 32 30 29 24 23 22 21 21 17 14 8 6 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTTGAATTTTTGGAATGTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTGGTCTCATTTTTATTGATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATTTGAATTTTTGGAATGTTTCTCAGAATCTCCTCCACATTTCTTTGTTGCTGTACCGGCACTACATAGACTTCGCAACGTGCTGCCCATTCGACACTAATCCTGGTACGCTCCAAATTAGCCATCATCGTTTTTTCGCGTTATTCGTGCCGTGGAGGATGCTAGGTCGATATTTGCAATATTGCCACTGGAAAACGAGGAGTAGAGTATAGTTACGAAATTTTCAAAATCAATAAAAATGAGACCAAA</canonical_amplicon>
		<polymorphic_amplicon>TATTTGAATTTTTGGAATGTTTCTCAGAATCTCCTCCACATTTCTTTGTTGCTGTACCGGCACTACATAGACTTCGCAACGTGCTGCCCATTCGACACTAATCCTGGTACGCTCCAAATTAGCCATCATCGTTTTTTCGCGTTATTCGYGCCGTGGAGGATGCTAGGTCGATATTTGCAATATTGCCACTGGAAAACGAGGAGTAGAGTATAGTTACGAAATTTTCAAAATCAATAAAAATGAGACCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34129</snp_id>
        <super_contig>c008900855.Contig2</super_contig>
        <contig_pos>42243</contig_pos>
        <strand>+</strand>
        <context>TCGATATTTG[C/T]AATATTGCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCGTTTTTTCGCGTTATTCGTGCCGTGGAGGATGCTAGGTCGATATTTG</left_flank>
        <right_flank>AATATTGCCACTGGAAAACGAGGAGTAGAGTATAGTTACGAAATTTTCAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAATACTATGCAATCCGTCTCCAAATCCGTGAAATTCCTAAAATTCGTAAACGTAAAATCACATCCCTGTAACTCCCACTTCGTTCCGAGACCAGCTCATGAAAAACGAGACGACGTTGAGCATAGTAGAGAAAATGACCATACCGACATACACATATAACTGATTTTTCAACTCGTTTAAATCACCTCTATTTCGAAAAAGACAGTTGGCCATTATGTTGCCGTTTGGACCGTCACAAGTCATGTAGGCGCATTTTCACAGAACTCATCCTTAACCTCATTGAAATCCAACCACCCACGTTTTCTTCTCCTAGATTTCTTATTTGAATTTTTGGAATGTTTCTCAGAATCTCCTCCACATTTCTTTGTTGCTGTACCGGCACTACATAGACTTCGCAACGTGCTGCCCATTCGACACTAATCCTGGTACGCTCCAAATTAGCCATCATCGTTTTTTCGCGTTATTCGTGCCGTGGAGGATGCTAGGTCGATATTTGCAATATTGCCACTGGAAAACGAGGAGTAGAGTATAGTTACGAAATTTTCAAAATCAATAAAAATGAGACCAAACCCTTCCAACAGTGATGATTTTCCAACTTAGCTCTGTATACGCAGCATATAGATTTTTATTGAATTCAAAAAGTTTCTGAAATTTTCAATAGGGTCAAAAGCTTTTAAAAATGTCGAAAAGTCTACGTAGAACCCTAGCGGCGATACGTTGCTTCGTGATCCTAGAAACCCTTTTGGAATCGTTAAATCTGACAAAGTATGCAGCTTTAAAACGCGGCCCCAGATCTTGTTAGTTTCATTAATTAGAATGTTTTCGAATTTTTCTAAATTCCCCACGCCTTGATCCCTTATGATCACTCACATGTGCTTGCGTAAATCTCTTCGGTAGATTCATGTAGTGGAGCCATCTTGACCAATTCGTGACATTTGGGAGAGATATGCTAGAGAAGTGCATGGATTTCTGGAAATAATATTAGGTTGAACAGAAA</canonical>
            <polymorphic>AGAAATACTATGCAATCCGTCTCCAAATCCGTGAAATTCCTAAAATTCGTAAACGTAAAATCACATCCCTGTAACTCCCACTTCGTTCCGAGACCAGCTCATGAAAAACGAGACGACGTTGAGCATAGTAGAGAAAATGACCATACCGACATACACATATAACTGATTTTTCAACTCGTTTAAATCACCTCTATTTCGAAAAAGACAGTTGGCCATTATGTTGCCGTTTGGACCGTCACAAGTCATGTAGGCGCATTTTCACAGAACTCATCCTTAACCTCATTGAAATCCAACCACCCACGTTTTCTTCTCCTAGATTTCTTATTTGAATTTTTGGAATGTTTCTCAGAATCTCCTCCACATTTCTTTGTTGCTGTACCGGCACTACATAGACTTCGCAACGTGCTGCCCATTCGACACTAATCCTGGTACGCTCCAAATTAGCCATCATCGTTTTTTCGCGTTATTCGTGCCGTGGAGGATGCTAGGTCGATATTTGYAATATTGCCACTGGAAAACGAGGAGTAGAGTATAGTTACGAAATTTTCAAAATCAATAAAAATGAGACCAAACCCTTCCAACAGTGATGATTTTCCAACTTAGCTCTGTATACGCAGCATATAGATTTTTATTGAATTCAAAAAGTTTCTGAAATTTTCAATAGGGTCAAAAGCTTTTAAAAATGTCGAAAAGTCTACGTAGAACCCTAGCGGCGATACGTTGCTTCGTGATCCTAGAAACCCTTTTGGAATCGTTAAATCTGACAAAGTATGCAGCTTTAAAACGCGGCCCCAGATCTTGTTAGTTTCATTAATTAGAATGTTTTCGAATTTTTCTAAATTCCCCACGCCTTGATCCCTTATGATCACTCACATGTGCTTGCGTAAATCTCTTCGGTAGATTCATGTAGTGGAGCCATCTTGACCAATTCGTGACATTTGGGAGAGATATGCTAGAGAAGTGCATGGATTTCTGGAAATAATATTAGGTTGAACAGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>487 274 190 37 12</canonical_bands>
                <polymorphic_bands>761 190 37 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTTGAATTTTTGGAATGTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTGGTCTCATTTTTATTGATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATTTGAATTTTTGGAATGTTTCTCAGAATCTCCTCCACATTTCTTTGTTGCTGTACCGGCACTACATAGACTTCGCAACGTGCTGCCCATTCGACACTAATCCTGGTACGCTCCAAATTAGCCATCATCGTTTTTTCGCGTTATTCGTGCCGTGGAGGATGCTAGGTCGATATTTGCAATATTGCCACTGGAAAACGAGGAGTAGAGTATAGTTACGAAATTTTCAAAATCAATAAAAATGAGACCAAA</canonical_amplicon>
		<polymorphic_amplicon>TATTTGAATTTTTGGAATGTTTCTCAGAATCTCCTCCACATTTCTTTGTTGCTGTACCGGCACTACATAGACTTCGCAACGTGCTGCCCATTCGACACTAATCCTGGTACGCTCCAAATTAGCCATCATCGTTTTTTCGCGTTATTCGTGCCGTGGAGGATGCTAGGTCGATATTTGYAATATTGCCACTGGAAAACGAGGAGTAGAGTATAGTTACGAAATTTTCAAAATCAATAAAAATGAGACCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34130</snp_id>
        <super_contig>c008900855.Contig2</super_contig>
        <contig_pos>42274</contig_pos>
        <strand>+</strand>
        <context>AGGAGTAGAG[G/T]ATAGTTACGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATGCTAGGTCGATATTTGCAATATTGCCACTGGAAAACGAGGAGTAGAG</left_flank>
        <right_flank>ATAGTTACGAAATTTTCAAAATCAATAAAAATGAGACCAAACCCTTCCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAATTCCTAAAATTCGTAAACGTAAAATCACATCCCTGTAACTCCCACTTCGTTCCGAGACCAGCTCATGAAAAACGAGACGACGTTGAGCATAGTAGAGAAAATGACCATACCGACATACACATATAACTGATTTTTCAACTCGTTTAAATCACCTCTATTTCGAAAAAGACAGTTGGCCATTATGTTGCCGTTTGGACCGTCACAAGTCATGTAGGCGCATTTTCACAGAACTCATCCTTAACCTCATTGAAATCCAACCACCCACGTTTTCTTCTCCTAGATTTCTTATTTGAATTTTTGGAATGTTTCTCAGAATCTCCTCCACATTTCTTTGTTGCTGTACCGGCACTACATAGACTTCGCAACGTGCTGCCCATTCGACACTAATCCTGGTACGCTCCAAATTAGCCATCATCGTTTTTTCGCGTTATTCGTGCCGTGGAGGATGCTAGGTCGATATTTGCAATATTGCCACTGGAAAACGAGGAGTAGAGTATAGTTACGAAATTTTCAAAATCAATAAAAATGAGACCAAACCCTTCCAACAGTGATGATTTTCCAACTTAGCTCTGTATACGCAGCATATAGATTTTTATTGAATTCAAAAAGTTTCTGAAATTTTCAATAGGGTCAAAAGCTTTTAAAAATGTCGAAAAGTCTACGTAGAACCCTAGCGGCGATACGTTGCTTCGTGATCCTAGAAACCCTTTTGGAATCGTTAAATCTGACAAAGTATGCAGCTTTAAAACGCGGCCCCAGATCTTGTTAGTTTCATTAATTAGAATGTTTTCGAATTTTTCTAAATTCCCCACGCCTTGATCCCTTATGATCACTCACATGTGCTTGCGTAAATCTCTTCGGTAGATTCATGTAGTGGAGCCATCTTGACCAATTCGTGACATTTGGGAGAGATATGCTAGAGAAGTGCATGGATTTCTGGAAATAATATTAGGTTGAACAGAAAGTTTCTTTCTTTTTTGGCAATATTTTTGACC</canonical>
            <polymorphic>TGAAATTCCTAAAATTCGTAAACGTAAAATCACATCCCTGTAACTCCCACTTCGTTCCGAGACCAGCTCATGAAAAACGAGACGACGTTGAGCATAGTAGAGAAAATGACCATACCGACATACACATATAACTGATTTTTCAACTCGTTTAAATCACCTCTATTTCGAAAAAGACAGTTGGCCATTATGTTGCCGTTTGGACCGTCACAAGTCATGTAGGCGCATTTTCACAGAACTCATCCTTAACCTCATTGAAATCCAACCACCCACGTTTTCTTCTCCTAGATTTCTTATTTGAATTTTTGGAATGTTTCTCAGAATCTCCTCCACATTTCTTTGTTGCTGTACCGGCACTACATAGACTTCGCAACGTGCTGCCCATTCGACACTAATCCTGGTACGCTCCAAATTAGCCATCATCGTTTTTTCGCGTTATTCGTGCCGTGGAGGATGCTAGGTCGATATTTGCAATATTGCCACTGGAAAACGAGGAGTAGAGKATAGTTACGAAATTTTCAAAATCAATAAAAATGAGACCAAACCCTTCCAACAGTGATGATTTTCCAACTTAGCTCTGTATACGCAGCATATAGATTTTTATTGAATTCAAAAAGTTTCTGAAATTTTCAATAGGGTCAAAAGCTTTTAAAAATGTCGAAAAGTCTACGTAGAACCCTAGCGGCGATACGTTGCTTCGTGATCCTAGAAACCCTTTTGGAATCGTTAAATCTGACAAAGTATGCAGCTTTAAAACGCGGCCCCAGATCTTGTTAGTTTCATTAATTAGAATGTTTTCGAATTTTTCTAAATTCCCCACGCCTTGATCCCTTATGATCACTCACATGTGCTTGCGTAAATCTCTTCGGTAGATTCATGTAGTGGAGCCATCTTGACCAATTCGTGACATTTGGGAGAGATATGCTAGAGAAGTGCATGGATTTCTGGAAATAATATTAGGTTGAACAGAAAGTTTCTTTCTTTTTTGGCAATATTTTTGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTCCTCCACATTTCTTTGT</pcr_primer_p1>
		<pcr_primer_p2>TAAGTTGGAAAATCATCACTGTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATCTCCTCCACATTTCTTTGTTGCTGTACCGGCACTACATAGACTTCGCAACGTGCTGCCCATTCGACACTAATCCTGGTACGCTCCAAATTAGCCATCATCGTTTTTTCGCGTTATTCGTGCCGTGGAGGATGCTAGGTCGATATTTGCAATATTGCCACTGGAAAACGAGGAGTAGAGTATAGTTACGAAATTTTCAAAATCAATAAAAATGAGACCAAACCCTTCCAACAGTGATGATTTTCCAACTTA</canonical_amplicon>
		<polymorphic_amplicon>ATCTCCTCCACATTTCTTTGTTGCTGTACCGGCACTACATAGACTTCGCAACGTGCTGCCCATTCGACACTAATCCTGGTACGCTCCAAATTAGCCATCATCGTTTTTTCGCGTTATTCGTGCCGTGGAGGATGCTAGGTCGATATTTGCAATATTGCCACTGGAAAACGAGGAGTAGAGKATAGTTACGAAATTTTCAAAATCAATAAAAATGAGACCAAACCCTTCCAACAGTGATGATTTTCCAACTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34131</snp_id>
        <super_contig>c008900855.Contig2</super_contig>
        <contig_pos>42291</contig_pos>
        <strand>+</strand>
        <context>ACGAAATTTT[C/G]AAAATCAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGCAATATTGCCACTGGAAAACGAGGAGTAGAGTATAGTTACGAAATTTT</left_flank>
        <right_flank>AAAATCAATAAAAATGAGACCAAACCCTTCCAACAGTGATGATTTTCCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAAACGTAAAATCACATCCCTGTAACTCCCACTTCGTTCCGAGACCAGCTCATGAAAAACGAGACGACGTTGAGCATAGTAGAGAAAATGACCATACCGACATACACATATAACTGATTTTTCAACTCGTTTAAATCACCTCTATTTCGAAAAAGACAGTTGGCCATTATGTTGCCGTTTGGACCGTCACAAGTCATGTAGGCGCATTTTCACAGAACTCATCCTTAACCTCATTGAAATCCAACCACCCACGTTTTCTTCTCCTAGATTTCTTATTTGAATTTTTGGAATGTTTCTCAGAATCTCCTCCACATTTCTTTGTTGCTGTACCGGCACTACATAGACTTCGCAACGTGCTGCCCATTCGACACTAATCCTGGTACGCTCCAAATTAGCCATCATCGTTTTTTCGCGTTATTCGTGCCGTGGAGGATGCTAGGTCGATATTTGCAATATTGCCACTGGAAAACGAGGAGTAGAGTATAGTTACGAAATTTTCAAAATCAATAAAAATGAGACCAAACCCTTCCAACAGTGATGATTTTCCAACTTAGCTCTGTATACGCAGCATATAGATTTTTATTGAATTCAAAAAGTTTCTGAAATTTTCAATAGGGTCAAAAGCTTTTAAAAATGTCGAAAAGTCTACGTAGAACCCTAGCGGCGATACGTTGCTTCGTGATCCTAGAAACCCTTTTGGAATCGTTAAATCTGACAAAGTATGCAGCTTTAAAACGCGGCCCCAGATCTTGTTAGTTTCATTAATTAGAATGTTTTCGAATTTTTCTAAATTCCCCACGCCTTGATCCCTTATGATCACTCACATGTGCTTGCGTAAATCTCTTCGGTAGATTCATGTAGTGGAGCCATCTTGACCAATTCGTGACATTTGGGAGAGATATGCTAGAGAAGTGCATGGATTTCTGGAAATAATATTAGGTTGAACAGAAAGTTTCTTTCTTTTTTGGCAATATTTTTGACCAAATTTTTCTTAAAGCT</canonical>
            <polymorphic>GTAAACGTAAAATCACATCCCTGTAACTCCCACTTCGTTCCGAGACCAGCTCATGAAAAACGAGACGACGTTGAGCATAGTAGAGAAAATGACCATACCGACATACACATATAACTGATTTTTCAACTCGTTTAAATCACCTCTATTTCGAAAAAGACAGTTGGCCATTATGTTGCCGTTTGGACCGTCACAAGTCATGTAGGCGCATTTTCACAGAACTCATCCTTAACCTCATTGAAATCCAACCACCCACGTTTTCTTCTCCTAGATTTCTTATTTGAATTTTTGGAATGTTTCTCAGAATCTCCTCCACATTTCTTTGTTGCTGTACCGGCACTACATAGACTTCGCAACGTGCTGCCCATTCGACACTAATCCTGGTACGCTCCAAATTAGCCATCATCGTTTTTTCGCGTTATTCGTGCCGTGGAGGATGCTAGGTCGATATTTGCAATATTGCCACTGGAAAACGAGGAGTAGAGTATAGTTACGAAATTTTSAAAATCAATAAAAATGAGACCAAACCCTTCCAACAGTGATGATTTTCCAACTTAGCTCTGTATACGCAGCATATAGATTTTTATTGAATTCAAAAAGTTTCTGAAATTTTCAATAGGGTCAAAAGCTTTTAAAAATGTCGAAAAGTCTACGTAGAACCCTAGCGGCGATACGTTGCTTCGTGATCCTAGAAACCCTTTTGGAATCGTTAAATCTGACAAAGTATGCAGCTTTAAAACGCGGCCCCAGATCTTGTTAGTTTCATTAATTAGAATGTTTTCGAATTTTTCTAAATTCCCCACGCCTTGATCCCTTATGATCACTCACATGTGCTTGCGTAAATCTCTTCGGTAGATTCATGTAGTGGAGCCATCTTGACCAATTCGTGACATTTGGGAGAGATATGCTAGAGAAGTGCATGGATTTCTGGAAATAATATTAGGTTGAACAGAAAGTTTCTTTCTTTTTTGGCAATATTTTTGACCAAATTTTTCTTAAAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTCCTCCACATTTCTTTGT</pcr_primer_p1>
		<pcr_primer_p2>TAAGTTGGAAAATCATCACTGTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATCTCCTCCACATTTCTTTGTTGCTGTACCGGCACTACATAGACTTCGCAACGTGCTGCCCATTCGACACTAATCCTGGTACGCTCCAAATTAGCCATCATCGTTTTTTCGCGTTATTCGTGCCGTGGAGGATGCTAGGTCGATATTTGCAATATTGCCACTGGAAAACGAGGAGTAGAGTATAGTTACGAAATTTTCAAAATCAATAAAAATGAGACCAAACCCTTCCAACAGTGATGATTTTCCAACTTA</canonical_amplicon>
		<polymorphic_amplicon>ATCTCCTCCACATTTCTTTGTTGCTGTACCGGCACTACATAGACTTCGCAACGTGCTGCCCATTCGACACTAATCCTGGTACGCTCCAAATTAGCCATCATCGTTTTTTCGCGTTATTCGTGCCGTGGAGGATGCTAGGTCGATATTTGCAATATTGCCACTGGAAAACGAGGAGTAGAGTATAGTTACGAAATTTTSAAAATCAATAAAAATGAGACCAAACCCTTCCAACAGTGATGATTTTCCAACTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34132</snp_id>
        <super_contig>c008900855.Contig2</super_contig>
        <contig_pos>42351</contig_pos>
        <strand>+</strand>
        <context>ACTTAGCTCT[G/T]TATACGCARC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAATGAGACCAAACCCTTCCAACAGTGATGATTTTCCAACTTAGCTCT</left_flank>
        <right_flank>TATACGCAGCATATAGATTTTTATTGAATTCAAAAAGTTTCTGAAATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAGACGACGTTGAGCATAGTAGAGAAAATGACCATACCGACATACACATATAACTGATTTTTCAACTCGTTTAAATCACCTCTATTTCGAAAAAGACAGTTGGCCATTATGTTGCCGTTTGGACCGTCACAAGTCATGTAGGCGCATTTTCACAGAACTCATCCTTAACCTCATTGAAATCCAACCACCCACGTTTTCTTCTCCTAGATTTCTTATTTGAATTTTTGGAATGTTTCTCAGAATCTCCTCCACATTTCTTTGTTGCTGTACCGGCACTACATAGACTTCGCAACGTGCTGCCCATTCGACACTAATCCTGGTACGCTCCAAATTAGCCATCATCGTTTTTTCGCGTTATTCGTGCCGTGGAGGATGCTAGGTCGATATTTGCAATATTGCCACTGGAAAACGAGGAGTAGAGTATAGTTACGAAATTTTCAAAATCAATAAAAATGAGACCAAACCCTTCCAACAGTGATGATTTTCCAACTTAGCTCTGTATACGCAGCATATAGATTTTTATTGAATTCAAAAAGTTTCTGAAATTTTCAATAGGGTCAAAAGCTTTTAAAAATGTCGAAAAGTCTACGTAGAACCCTAGCGGCGATACGTTGCTTCGTGATCCTAGAAACCCTTTTGGAATCGTTAAATCTGACAAAGTATGCAGCTTTAAAACGCGGCCCCAGATCTTGTTAGTTTCATTAATTAGAATGTTTTCGAATTTTTCTAAATTCCCCACGCCTTGATCCCTTATGATCACTCACATGTGCTTGCGTAAATCTCTTCGGTAGATTCATGTAGTGGAGCCATCTTGACCAATTCGTGACATTTGGGAGAGATATGCTAGAGAAGTGCATGGATTTCTGGAAATAATATTAGGTTGAACAGAAAGTTTCTTTCTTTTTTGGCAATATTTTTGACCAAATTTTTCTTAAAGCTAAAAGGGACTAGATCAATGGAAGTAGTGTCCATGAGCATCGATAGCTGCCTGGTAACGCT</canonical>
            <polymorphic>CGAGACGACGTTGAGCATAGTAGAGAAAATGACCATACCGACATACACATATAACTGATTTTTCAACTCGTTTAAATCACCTCTATTTCGAAAAAGACAGTTGGCCATTATGTTGCCGTTTGGACCGTCACAAGTCATGTAGGCGCATTTTCACAGAACTCATCCTTAACCTCATTGAAATCCAACCACCCACGTTTTCTTCTCCTAGATTTCTTATTTGAATTTTTGGAATGTTTCTCAGAATCTCCTCCACATTTCTTTGTTGCTGTACCGGCACTACATAGACTTCGCAACGTGCTGCCCATTCGACACTAATCCTGGTACGCTCCAAATTAGCCATCATCGTTTTTTCGCGTTATTCGTGCCGTGGAGGATGCTAGGTCGATATTTGCAATATTGCCACTGGAAAACGAGGAGTAGAGTATAGTTACGAAATTTTCAAAATCAATAAAAATGAGACCAAACCCTTCCAACAGTGATGATTTTCCAACTTAGCTCTKTATACGCAGCATATAGATTTTTATTGAATTCAAAAAGTTTCTGAAATTTTCAATAGGGTCAAAAGCTTTTAAAAATGTCGAAAAGTCTACGTAGAACCCTAGCGGCGATACGTTGCTTCGTGATCCTAGAAACCCTTTTGGAATCGTTAAATCTGACAAAGTATGCAGCTTTAAAACGCGGCCCCAGATCTTGTTAGTTTCATTAATTAGAATGTTTTCGAATTTTTCTAAATTCCCCACGCCTTGATCCCTTATGATCACTCACATGTGCTTGCGTAAATCTCTTCGGTAGATTCATGTAGTGGAGCCATCTTGACCAATTCGTGACATTTGGGAGAGATATGCTAGAGAAGTGCATGGATTTCTGGAAATAATATTAGGTTGAACAGAAAGTTTCTTTCTTTTTTGGCAATATTTTTGACCAAATTTTTCTTAAAGCTAAAAGGGACTAGATCAATGGAAGTAGTGTCCATGAGCATCGATAGCTGCCTGGTAACGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 414 85</canonical_bands>
                <polymorphic_bands>586 414</polymorphic_bands>
            </assay>
            <assay>
                <site>GTATAC</site>
                <isoschizomers>
                    <enzyme>BssNAI</enzyme>
                    <enzyme>Bst1107I</enzyme>
                    <enzyme>BstZ17I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 413 85</canonical_bands>
                <polymorphic_bands>587 413</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCAATAAAAATGAGACCAAAC</pcr_primer_p1>
		<pcr_primer_p2>GTTTTAAAGCTGCATACTTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>AAATCAATAAAAATGAGACCAAACCCTTCCAACAGTGATGATTTTCCAACTTAGCTCTGTATACGCAGCATATAGATTTTTATTGAATTCAAAAAGTTTCTGAAATTTTCAATAGGGTCAAAAGCTTTTAAAAATGTCGAAAAGTCTACGTAGAACCCTAGCGGCGATACGTTGCTTCGTGATCCTAGAAACCCTTTTGGAATCGTTAAATCTGACAAAGTATGCAGCTTTAAAAC</canonical_amplicon>
		<polymorphic_amplicon>AAATCAATAAAAATGAGACCAAACCCTTCCAACAGTGATGATTTTCCAACTTAGCTCTKTATACGCAGCATATAGATTTTTATTGAATTCAAAAAGTTTCTGAAATTTTCAATAGGGTCAAAAGCTTTTAAAAATGTCGAAAAGTCTACGTAGAACCCTAGCGGCGATACGTTGCTTCGTGATCCTAGAAACCCTTTTGGAATCGTTAAATCTGACAAAGTATGCAGCTTTAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34133</snp_id>
        <super_contig>c008900855.Contig2</super_contig>
        <contig_pos>42360</contig_pos>
        <strand>+</strand>
        <context>TKTATACGCA[A/G]CATATAGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCAAACCCTTCCAACAGTGATGATTTTCCAACTTAGCTCTGTATACGCA</left_flank>
        <right_flank>CATATAGATTTTTATTGAATTCAAAAAGTTTCTGAAATTTTCAATAGGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTGAGCATAGTAGAGAAAATGACCATACCGACATACACATATAACTGATTTTTCAACTCGTTTAAATCACCTCTATTTCGAAAAAGACAGTTGGCCATTATGTTGCCGTTTGGACCGTCACAAGTCATGTAGGCGCATTTTCACAGAACTCATCCTTAACCTCATTGAAATCCAACCACCCACGTTTTCTTCTCCTAGATTTCTTATTTGAATTTTTGGAATGTTTCTCAGAATCTCCTCCACATTTCTTTGTTGCTGTACCGGCACTACATAGACTTCGCAACGTGCTGCCCATTCGACACTAATCCTGGTACGCTCCAAATTAGCCATCATCGTTTTTTCGCGTTATTCGTGCCGTGGAGGATGCTAGGTCGATATTTGCAATATTGCCACTGGAAAACGAGGAGTAGAGTATAGTTACGAAATTTTCAAAATCAATAAAAATGAGACCAAACCCTTCCAACAGTGATGATTTTCCAACTTAGCTCTGTATACGCAGCATATAGATTTTTATTGAATTCAAAAAGTTTCTGAAATTTTCAATAGGGTCAAAAGCTTTTAAAAATGTCGAAAAGTCTACGTAGAACCCTAGCGGCGATACGTTGCTTCGTGATCCTAGAAACCCTTTTGGAATCGTTAAATCTGACAAAGTATGCAGCTTTAAAACGCGGCCCCAGATCTTGTTAGTTTCATTAATTAGAATGTTTTCGAATTTTTCTAAATTCCCCACGCCTTGATCCCTTATGATCACTCACATGTGCTTGCGTAAATCTCTTCGGTAGATTCATGTAGTGGAGCCATCTTGACCAATTCGTGACATTTGGGAGAGATATGCTAGAGAAGTGCATGGATTTCTGGAAATAATATTAGGTTGAACAGAAAGTTTCTTTCTTTTTTGGCAATATTTTTGACCAAATTTTTCTTAAAGCTAAAAGGGACTAGATCAATGGAAGTAGTGTCCATGAGCATCGATAGCTGCCTGGTAACGCTTCGGTAATT</canonical>
            <polymorphic>GTTGAGCATAGTAGAGAAAATGACCATACCGACATACACATATAACTGATTTTTCAACTCGTTTAAATCACCTCTATTTCGAAAAAGACAGTTGGCCATTATGTTGCCGTTTGGACCGTCACAAGTCATGTAGGCGCATTTTCACAGAACTCATCCTTAACCTCATTGAAATCCAACCACCCACGTTTTCTTCTCCTAGATTTCTTATTTGAATTTTTGGAATGTTTCTCAGAATCTCCTCCACATTTCTTTGTTGCTGTACCGGCACTACATAGACTTCGCAACGTGCTGCCCATTCGACACTAATCCTGGTACGCTCCAAATTAGCCATCATCGTTTTTTCGCGTTATTCGTGCCGTGGAGGATGCTAGGTCGATATTTGCAATATTGCCACTGGAAAACGAGGAGTAGAGTATAGTTACGAAATTTTCAAAATCAATAAAAATGAGACCAAACCCTTCCAACAGTGATGATTTTCCAACTTAGCTCTGTATACGCARCATATAGATTTTTATTGAATTCAAAAAGTTTCTGAAATTTTCAATAGGGTCAAAAGCTTTTAAAAATGTCGAAAAGTCTACGTAGAACCCTAGCGGCGATACGTTGCTTCGTGATCCTAGAAACCCTTTTGGAATCGTTAAATCTGACAAAGTATGCAGCTTTAAAACGCGGCCCCAGATCTTGTTAGTTTCATTAATTAGAATGTTTTCGAATTTTTCTAAATTCCCCACGCCTTGATCCCTTATGATCACTCACATGTGCTTGCGTAAATCTCTTCGGTAGATTCATGTAGTGGAGCCATCTTGACCAATTCGTGACATTTGGGAGAGATATGCTAGAGAAGTGCATGGATTTCTGGAAATAATATTAGGTTGAACAGAAAGTTTCTTTCTTTTTTGGCAATATTTTTGACCAAATTTTTCTTAAAGCTAAAAGGGACTAGATCAATGGAAGTAGTGTCCATGAGCATCGATAGCTGCCTGGTAACGCTTCGGTAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>307 291 209 96 63 21 13</canonical_bands>
                <polymorphic_bands>307 305 291 63 21 13</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>320 288 209 159 24</canonical_bands>
                <polymorphic_bands>368 320 288 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCAATAAAAATGAGACCAAAC</pcr_primer_p1>
		<pcr_primer_p2>GTTTTAAAGCTGCATACTTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>AAATCAATAAAAATGAGACCAAACCCTTCCAACAGTGATGATTTTCCAACTTAGCTCTGTATACGCAGCATATAGATTTTTATTGAATTCAAAAAGTTTCTGAAATTTTCAATAGGGTCAAAAGCTTTTAAAAATGTCGAAAAGTCTACGTAGAACCCTAGCGGCGATACGTTGCTTCGTGATCCTAGAAACCCTTTTGGAATCGTTAAATCTGACAAAGTATGCAGCTTTAAAAC</canonical_amplicon>
		<polymorphic_amplicon>AAATCAATAAAAATGAGACCAAACCCTTCCAACAGTGATGATTTTCCAACTTAGCTCTGTATACGCARCATATAGATTTTTATTGAATTCAAAAAGTTTCTGAAATTTTCAATAGGGTCAAAAGCTTTTAAAAATGTCGAAAAGTCTACGTAGAACCCTAGCGGCGATACGTTGCTTCGTGATCCTAGAAACCCTTTTGGAATCGTTAAATCTGACAAAGTATGCAGCTTTAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34134</snp_id>
        <super_contig>c008900855.Contig2</super_contig>
        <contig_pos>42487</contig_pos>
        <strand>+</strand>
        <context>CTAGAAACCC[C/T]TTTGGAATCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTACGTAGAACCCTAGCGGCGATACGTTGCTTCGTGATCCTAGAAACCC</left_flank>
        <right_flank>TTTGGAATCGTTAAATCTGACAAAGTATGCAGCTTTAAAACGCGGCCCCA</right_flank>
        <qual_score>149</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTAGGCGCATTTTCACAGAACTCATCCTTAACCTCATTGAAATCCAACCACCCACGTTTTCTTCTCCTAGATTTCTTATTTGAATTTTTGGAATGTTTCTCAGAATCTCCTCCACATTTCTTTGTTGCTGTACCGGCACTACATAGACTTCGCAACGTGCTGCCCATTCGACACTAATCCTGGTACGCTCCAAATTAGCCATCATCGTTTTTTCGCGTTATTCGTGCCGTGGAGGATGCTAGGTCGATATTTGCAATATTGCCACTGGAAAACGAGGAGTAGAGTATAGTTACGAAATTTTCAAAATCAATAAAAATGAGACCAAACCCTTCCAACAGTGATGATTTTCCAACTTAGCTCTGTATACGCAGCATATAGATTTTTATTGAATTCAAAAAGTTTCTGAAATTTTCAATAGGGTCAAAAGCTTTTAAAAATGTCGAAAAGTCTACGTAGAACCCTAGCGGCGATACGTTGCTTCGTGATCCTAGAAACCCTTTTGGAATCGTTAAATCTGACAAAGTATGCAGCTTTAAAACGCGGCCCCAGATCTTGTTAGTTTCATTAATTAGAATGTTTTCGAATTTTTCTAAATTCCCCACGCCTTGATCCCTTATGATCACTCACATGTGCTTGCGTAAATCTCTTCGGTAGATTCATGTAGTGGAGCCATCTTGACCAATTCGTGACATTTGGGAGAGATATGCTAGAGAAGTGCATGGATTTCTGGAAATAATATTAGGTTGAACAGAAAGTTTCTTTCTTTTTTGGCAATATTTTTGACCAAATTTTTCTTAAAGCTAAAAGGGACTAGATCAATGGAAGTAGTGTCCATGAGCATCGATAGCTGCCTGGTAACGCTTCGGTAATTTCCTGATCTCATAGGCCTAGAACGAGGAGGGCCGCAATTTAAAACGTGGGTCAACTCCTTTTTTATATCATCTTTTCACTTGAAATATTTTCTATCAAGATGGCGTTTAAGAGCCCCAAACGACTAT</canonical>
            <polymorphic>ATGTAGGCGCATTTTCACAGAACTCATCCTTAACCTCATTGAAATCCAACCACCCACGTTTTCTTCTCCTAGATTTCTTATTTGAATTTTTGGAATGTTTCTCAGAATCTCCTCCACATTTCTTTGTTGCTGTACCGGCACTACATAGACTTCGCAACGTGCTGCCCATTCGACACTAATCCTGGTACGCTCCAAATTAGCCATCATCGTTTTTTCGCGTTATTCGTGCCGTGGAGGATGCTAGGTCGATATTTGCAATATTGCCACTGGAAAACGAGGAGTAGAGTATAGTTACGAAATTTTCAAAATCAATAAAAATGAGACCAAACCCTTCCAACAGTGATGATTTTCCAACTTAGCTCTGTATACGCAGCATATAGATTTTTATTGAATTCAAAAAGTTTCTGAAATTTTCAATAGGGTCAAAAGCTTTTAAAAATGTCGAAAAGTCTACGTAGAACCCTAGCGGCGATACGTTGCTTCGTGATCCTAGAAACCCYTTTGGAATCGTTAAATCTGACAAAGTATGCAGCTTTAAAACGCGGCCCCAGATCTTGTTAGTTTCATTAATTAGAATGTTTTCGAATTTTTCTAAATTCCCCACGCCTTGATCCCTTATGATCACTCACATGTGCTTGCGTAAATCTCTTCGGTAGATTCATGTAGTGGAGCCATCTTGACCAATTCGTGACATTTGGGAGAGATATGCTAGAGAAGTGCATGGATTTCTGGAAATAATATTAGGTTGAACAGAAAGTTTCTTTCTTTTTTGGCAATATTTTTGACCAAATTTTTCTTAAAGCTAAAAGGGACTAGATCAATGGAAGTAGTGTCCATGAGCATCGATAGCTGCCTGGTAACGCTTCGGTAATTTCCTGATCTCATAGGCCTAGAACGAGGAGGGCCGCAATTTAAAACGTGGGTCAACTCCTTTTTTATATCATCTTTTCACTTGAAATATTTTCTATCAAGATGGCGTTTAAGAGCCCCAAACGACTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAAAAATGTCGAAAAGTCTACG</pcr_primer_p1>
		<pcr_primer_p2>CACTACATGAATCTACCGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TTAAAAATGTCGAAAAGTCTACGTAGAACCCTAGCGGCGATACGTTGCTTCGTGATCCTAGAAACCCTTTTGGAATCGTTAAATCTGACAAAGTATGCAGCTTTAAAACGCGGCCCCAGATCTTGTTAGTTTCATTAATTAGAATGTTTTCGAATTTTTCTAAATTCCCCACGCCTTGATCCCTTATGATCACTCACATGTGCTTGCGTAAATCTCTTCGGTAGATTCATGTAGTG</canonical_amplicon>
		<polymorphic_amplicon>TTAAAAATGTCGAAAAGTCTACGTAGAACCCTAGCGGCGATACGTTGCTTCGTGATCCTAGAAACCCYTTTGGAATCGTTAAATCTGACAAAGTATGCAGCTTTAAAACGCGGCCCCAGATCTTGTTAGTTTCATTAATTAGAATGTTTTCGAATTTTTCTAAATTCCCCACGCCTTGATCCCTTATGATCACTCACATGTGCTTGCGTAAATCTCTTCGGTAGATTCATGTAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34135</snp_id>
        <super_contig>c008900855.Contig2</super_contig>
        <contig_pos>42609</contig_pos>
        <strand>+</strand>
        <context>TCCCTTATGA[C/T]CACTCACATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGAATGTTTTCGAATTTTTCTAAATTCCCCACGCCTTGATCCCTTATGA</left_flank>
        <right_flank>CACTCACATGTGCTTGCGTAAATCTCTTCGGTAGATTCATGTAGTGGAGC</right_flank>
        <qual_score>146</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGTTGCTGTACCGGCACTACATAGACTTCGCAACGTGCTGCCCATTCGACACTAATCCTGGTACGCTCCAAATTAGCCATCATCGTTTTTTCGCGTTATTCGTGCCGTGGAGGATGCTAGGTCGATATTTGCAATATTGCCACTGGAAAACGAGGAGTAGAGTATAGTTACGAAATTTTCAAAATCAATAAAAATGAGACCAAACCCTTCCAACAGTGATGATTTTCCAACTTAGCTCTGTATACGCAGCATATAGATTTTTATTGAATTCAAAAAGTTTCTGAAATTTTCAATAGGGTCAAAAGCTTTTAAAAATGTCGAAAAGTCTACGTAGAACCCTAGCGGCGATACGTTGCTTCGTGATCCTAGAAACCCTTTTGGAATCGTTAAATCTGACAAAGTATGCAGCTTTAAAACGCGGCCCCAGATCTTGTTAGTTTCATTAATTAGAATGTTTTCGAATTTTTCTAAATTCCCCACGCCTTGATCCCTTATGATCACTCACATGTGCTTGCGTAAATCTCTTCGGTAGATTCATGTAGTGGAGCCATCTTGACCAATTCGTGACATTTGGGAGAGATATGCTAGAGAAGTGCATGGATTTCTGGAAATAATATTAGGTTGAACAGAAAGTTTCTTTCTTTTTTGGCAATATTTTTGACCAAATTTTTCTTAAAGCTAAAAGGGACTAGATCAATGGAAGTAGTGTCCATGAGCATCGATAGCTGCCTGGTAACGCTTCGGTAATTTCCTGATCTCATAGGCCTAGAACGAGGAGGGCCGCAATTTAAAACGTGGGTCAACTCCTTTTTTATATCATCTTTTCACTTGAAATATTTTCTATCAAGATGGCGTTTAAGAGCCCCAAACGACTATTGATCCGAAAGGGTAAGATTTGGAAAACACGGTGAATACAAAATAATAGTGCAGCCAAGCGACTTTAATTTTTGGCTGATCCCTCTTGTCACGGGGATCTCGCACTGGCGTGGTGGAAGTGA</canonical>
            <polymorphic>TTTGTTGCTGTACCGGCACTACATAGACTTCGCAACGTGCTGCCCATTCGACACTAATCCTGGTACGCTCCAAATTAGCCATCATCGTTTTTTCGCGTTATTCGTGCCGTGGAGGATGCTAGGTCGATATTTGCAATATTGCCACTGGAAAACGAGGAGTAGAGTATAGTTACGAAATTTTCAAAATCAATAAAAATGAGACCAAACCCTTCCAACAGTGATGATTTTCCAACTTAGCTCTGTATACGCAGCATATAGATTTTTATTGAATTCAAAAAGTTTCTGAAATTTTCAATAGGGTCAAAAGCTTTTAAAAATGTCGAAAAGTCTACGTAGAACCCTAGCGGCGATACGTTGCTTCGTGATCCTAGAAACCCTTTTGGAATCGTTAAATCTGACAAAGTATGCAGCTTTAAAACGCGGCCCCAGATCTTGTTAGTTTCATTAATTAGAATGTTTTCGAATTTTTCTAAATTCCCCACGCCTTGATCCCTTATGAYCACTCACATGTGCTTGCGTAAATCTCTTCGGTAGATTCATGTAGTGGAGCCATCTTGACCAATTCGTGACATTTGGGAGAGATATGCTAGAGAAGTGCATGGATTTCTGGAAATAATATTAGGTTGAACAGAAAGTTTCTTTCTTTTTTGGCAATATTTTTGACCAAATTTTTCTTAAAGCTAAAAGGGACTAGATCAATGGAAGTAGTGTCCATGAGCATCGATAGCTGCCTGGTAACGCTTCGGTAATTTCCTGATCTCATAGGCCTAGAACGAGGAGGGCCGCAATTTAAAACGTGGGTCAACTCCTTTTTTATATCATCTTTTCACTTGAAATATTTTCTATCAAGATGGCGTTTAAGAGCCCCAAACGACTATTGATCCGAAAGGGTAAGATTTGGAAAACACGGTGAATACAAAATAATAGTGCAGCCAAGCGACTTTAATTTTTGGCTGATCCCTCTTGTCACGGGGATCTCGCACTGGCGTGGTGGAAGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>363 196 124 76 65 62 59 27 18 10</canonical_bands>
                <polymorphic_bands>363 206 124 76 65 62 59 27 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAAAAATGTCGAAAAGTCTACG</pcr_primer_p1>
		<pcr_primer_p2>TGGCTCCACTACATGAATCT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTAAAAATGTCGAAAAGTCTACGTAGAACCCTAGCGGCGATACGTTGCTTCGTGATCCTAGAAACCCTTTTGGAATCGTTAAATCTGACAAAGTATGCAGCTTTAAAACGCGGCCCCAGATCTTGTTAGTTTCATTAATTAGAATGTTTTCGAATTTTTCTAAATTCCCCACGCCTTGATCCCTTATGATCACTCACATGTGCTTGCGTAAATCTCTTCGGTAGATTCATGTAGTGGAGCCA</canonical_amplicon>
		<polymorphic_amplicon>TTAAAAATGTCGAAAAGTCTACGTAGAACCCTAGCGGCGATACGTTGCTTCGTGATCCTAGAAACCCTTTTGGAATCGTTAAATCTGACAAAGTATGCAGCTTTAAAACGCGGCCCCAGATCTTGTTAGTTTCATTAATTAGAATGTTTTCGAATTTTTCTAAATTCCCCACGCCTTGATCCCTTATGAYCACTCACATGTGCTTGCGTAAATCTCTTCGGTAGATTCATGTAGTGGAGCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34136</snp_id>
        <super_contig>c008900855.Contig2</super_contig>
        <contig_pos>42662</contig_pos>
        <strand>+</strand>
        <context>AGTGGAGCCA[C/T]CTTGACCAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCACATGTGCTTGCGTAAATCTCTTCGGTAGATTCATGTAGTGGAGCCA</left_flank>
        <right_flank>CTTGACCAATTCGTGACATTTGGGAGAGATATGCTAGAGAAGTGCATGGA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAATCCTGGTACGCTCCAAATTAGCCATCATCGTTTTTTCGCGTTATTCGTGCCGTGGAGGATGCTAGGTCGATATTTGCAATATTGCCACTGGAAAACGAGGAGTAGAGTATAGTTACGAAATTTTCAAAATCAATAAAAATGAGACCAAACCCTTCCAACAGTGATGATTTTCCAACTTAGCTCTGTATACGCAGCATATAGATTTTTATTGAATTCAAAAAGTTTCTGAAATTTTCAATAGGGTCAAAAGCTTTTAAAAATGTCGAAAAGTCTACGTAGAACCCTAGCGGCGATACGTTGCTTCGTGATCCTAGAAACCCTTTTGGAATCGTTAAATCTGACAAAGTATGCAGCTTTAAAACGCGGCCCCAGATCTTGTTAGTTTCATTAATTAGAATGTTTTCGAATTTTTCTAAATTCCCCACGCCTTGATCCCTTATGATCACTCACATGTGCTTGCGTAAATCTCTTCGGTAGATTCATGTAGTGGAGCCATCTTGACCAATTCGTGACATTTGGGAGAGATATGCTAGAGAAGTGCATGGATTTCTGGAAATAATATTAGGTTGAACAGAAAGTTTCTTTCTTTTTTGGCAATATTTTTGACCAAATTTTTCTTAAAGCTAAAAGGGACTAGATCAATGGAAGTAGTGTCCATGAGCATCGATAGCTGCCTGGTAACGCTTCGGTAATTTCCTGATCTCATAGGCCTAGAACGAGGAGGGCCGCAATTTAAAACGTGGGTCAACTCCTTTTTTATATCATCTTTTCACTTGAAATATTTTCTATCAAGATGGCGTTTAAGAGCCCCAAACGACTATTGATCCGAAAGGGTAAGATTTGGAAAACACGGTGAATACAAAATAATAGTGCAGCCAAGCGACTTTAATTTTTGGCTGATCCCTCTTGTCACGGGGATCTCGCACTGGCGTGGTGGAAGTGAAACTTGGGTATTACTTCTTCTTCCGGTTCGACTGTCAGAATCAACTTCTTTCA</canonical>
            <polymorphic>CTAATCCTGGTACGCTCCAAATTAGCCATCATCGTTTTTTCGCGTTATTCGTGCCGTGGAGGATGCTAGGTCGATATTTGCAATATTGCCACTGGAAAACGAGGAGTAGAGTATAGTTACGAAATTTTCAAAATCAATAAAAATGAGACCAAACCCTTCCAACAGTGATGATTTTCCAACTTAGCTCTGTATACGCAGCATATAGATTTTTATTGAATTCAAAAAGTTTCTGAAATTTTCAATAGGGTCAAAAGCTTTTAAAAATGTCGAAAAGTCTACGTAGAACCCTAGCGGCGATACGTTGCTTCGTGATCCTAGAAACCCTTTTGGAATCGTTAAATCTGACAAAGTATGCAGCTTTAAAACGCGGCCCCAGATCTTGTTAGTTTCATTAATTAGAATGTTTTCGAATTTTTCTAAATTCCCCACGCCTTGATCCCTTATGATCACTCACATGTGCTTGCGTAAATCTCTTCGGTAGATTCATGTAGTGGAGCCAYCTTGACCAATTCGTGACATTTGGGAGAGATATGCTAGAGAAGTGCATGGATTTCTGGAAATAATATTAGGTTGAACAGAAAGTTTCTTTCTTTTTTGGCAATATTTTTGACCAAATTTTTCTTAAAGCTAAAAGGGACTAGATCAATGGAAGTAGTGTCCATGAGCATCGATAGCTGCCTGGTAACGCTTCGGTAATTTCCTGATCTCATAGGCCTAGAACGAGGAGGGCCGCAATTTAAAACGTGGGTCAACTCCTTTTTTATATCATCTTTTCACTTGAAATATTTTCTATCAAGATGGCGTTTAAGAGCCCCAAACGACTATTGATCCGAAAGGGTAAGATTTGGAAAACACGGTGAATACAAAATAATAGTGCAGCCAAGCGACTTTAATTTTTGGCTGATCCCTCTTGTCACGGGGATCTCGCACTGGCGTGGTGGAAGTGAAACTTGGGTATTACTTCTTCTTCCGGTTCGACTGTCAGAATCAACTTCTTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>308 206 193 146 94 42 11</canonical_bands>
                <polymorphic_bands>308 206 204 146 94 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAATCGTTAAATCTGACAAAG</pcr_primer_p1>
		<pcr_primer_p2>AAATCCATGCACTTCTCTAGC</pcr_primer_p2>
		<pcr_amplicon_size>225</pcr_amplicon_size>
		<canonical_amplicon>GGAATCGTTAAATCTGACAAAGTATGCAGCTTTAAAACGCGGCCCCAGATCTTGTTAGTTTCATTAATTAGAATGTTTTCGAATTTTTCTAAATTCCCCACGCCTTGATCCCTTATGATCACTCACATGTGCTTGCGTAAATCTCTTCGGTAGATTCATGTAGTGGAGCCATCTTGACCAATTCGTGACATTTGGGAGAGATATGCTAGAGAAGTGCATGGATTT</canonical_amplicon>
		<polymorphic_amplicon>GGAATCGTTAAATCTGACAAAGTATGCAGCTTTAAAACGCGGCCCCAGATCTTGTTAGTTTCATTAATTAGAATGTTTTCGAATTTTTCTAAATTCCCCACGCCTTGATCCCTTATGATCACTCACATGTGCTTGCGTAAATCTCTTCGGTAGATTCATGTAGTGGAGCCAYCTTGACCAATTCGTGACATTTGGGAGAGATATGCTAGAGAAGTGCATGGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34142</snp_id>
        <super_contig>c008900855.Contig2</super_contig>
        <contig_pos>44224</contig_pos>
        <strand></strand>
        <context>ACACATGAGC[T/C]ATCCGGTGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAAGAAAATAATTGTCTGGTTAGCCATTCCTCCAACTGCCACACATGAGC</left_flank>
        <right_flank>ATCCGGTGACCGCAGGGAGAACGAGAGCAAGGTTACTCTTTTTTTTAATA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTTGCGAATACCAGGTGTTTGACGACGAAATAAAATTATAAATAAAATCATTGCGCATATGTGCAGTGTAATAAGAACCAAAATAATCGTCATTACTCAAGCACGAAGTGATATAAAAATTTACAAATCTACGATCTAATAGACGCTGAACACAGCTCTCTGACAAAAAAATGTTTGACCTGGTAAACCATCTAGAAAACCAGAAATCGAGGCTCAAAAACAACCCTTCCAAAAAGAAAGAAGCTTTCTGTTCAACCTAATATTTTCTCTTCATTTCAAAATTAGCGTTTCGAATCTTTAAAAATGTGCCTGAGAGTTTGTGAAATTTAAAAAAACACGACCTTGAAATTTGGGTATATTTATTTCTTGAAGAATCCCAAGTCAAAAGCTGGTTAACTATGTTTCGTCAATTTTTAAAAATACAGTTCTAACCTTGTCCCGGCTAGAGAAGAAAATAATTGTCTGGTTAGCCATTCCTCCAACTGCCACACATGAGCTATCCGGTGACCGCAGGGAGAACGAGAGCAAGGTTACTCTTTTTTTTAATAGTTTTTGGTTGATCATTGTCTCGAATCGTCTTTAAGAAAATTAACCAGCATTCTGAAACCCAAATCATGAATAATGTACGACAGTTTGTCACTTACTTCTTCACCATTTGTAGTCTTAATCATCGGGTATAGAAATATTCAGAAAAATATTTGAAACTTGCAGGCTCCTACACACGGAGCCTTGGGAGAATGAGTTTAGTGTGCAGCTGACCACCTTTTATACTTCTAGATTTTCTCTGTAACCTCTCCTCAGTCATACAAACGTGTTGCTTCTGTGACGGGTACGGAGCAGTACGACCTGGCACTTATGTACATCTTTTTTGGAGTTAGATTTCAAACTCCACCCATTTAATAATTTAATCTACTTTGGTGGTCCTTAAATTCCAAATTGGAGATTTCTCGAGGCACCATAATGAAAGGTGTTCGCTTCTAAATCCGGTCCCCACCAAT</canonical>
            <polymorphic>TGTTTGCGAATACCAGGTGTTTGACGACGAAATAAAATTATAAATAAAATCATTGCGCATATGTGCAGTGTAATAAGAACCAAAATAATCGTCATTACTCAAGCACGAAGTGATATAAAAATTTACAAATCTACGATCTAATAGACGCTGAACACAGCTCTCTGACAAAAAAATGTTTGACCTGGTAAACCATCTAGAAAACCAGAAATCGAGGCTCAAAAACAACCCTTCCAAAAAGAAAGAAGCTTTCTGTTCAACCTAATATTTTCTCTTCATTTCAAAATTAGCGTTTCGAATCTTTAAAAATGTGCCTGAGAGTTTGTGAAATTTAAAAAAACACGACCTTGAAATTTGGGTATATTTATTTCTTGAAGAATCCCAAGTCAAAAGCTGGTTAACTATGTTTCGTCAATTTTTAAAAATACAGTTCTAACCTTGTCCCGGCTAGAGAAGAAAATAATTGTCTGGTTAGCCATTCCTCCAACTGCCACACATGAGCYATCCGGTGACCGCAGGGAGAACGAGAGCAAGGTTACTCTTTTTTTTAATAGTTTTTGGTTGATCATTGTCTCGAATCGTCTTTAAGAAAATTAACCAGCATTCTGAAACCCAAATCATGAATAATGTACGACAGTTTGTCACTTACTTCTTCACCATTTGTAGTCTTAATCATCGGGTATAGAAATATTCAGAAAAATATTTGAAACTTGCAGGCTCCTACACACGGAGCCTTGGGAGAATGAGTTTAGTGTGCAGCTGACCACCTTTTATACTTCTAGATTTTCTCTGTAACCTCTCCTCAGTCATACAAACGTGTTGCTTCTGTGACGGGTACGGAGCAGTACGACCTGGCACTTATGTACATCTTTTTTGGAGTTAGATTTCAAACTCCACCCATTTAATAATTTAATCTACTTTGGTGGTCCTTAAATTCCAAATTGGAGATTTCTCGAGGCACCATAATGAAAGGTGTTCGCTTCTAAATCCGGTCCCCACCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>258 244 157 145 108 88</canonical_bands>
                <polymorphic_bands>366 244 157 145 88</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>244 216 157 145 57 54 31 28 27 26 15</canonical_bands>
                <polymorphic_bands>244 242 157 145 57 54 31 28 27 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGGTTAACTATGTTTCGTCAAT</pcr_primer_p1>
		<pcr_primer_p2>GACAAACTGTCGTACATTATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGGTTAACTATGTTTCGTCAATTTTTAAAAATACAGTTCTAACCTTGTCCCGGCTAGAGAAGAAAATAATTGTCTGGTTAGCCATTCCTCCAACTGCCACACATGAGCTATCCGGTGACCGCAGGGAGAACGAGAGCAAGGTTACTCTTTTTTTTAATAGTTTTTGGTTGATCATTGTCTCGAATCGTCTTTAAGAAAATTAACCAGCATTCTGAAACCCAAATCATGAATAATGTACGACAGTTTGTC</canonical_amplicon>
		<polymorphic_amplicon>CTGGTTAACTATGTTTCGTCAATTTTTAAAAATACAGTTCTAACCTTGTCCCGGCTAGAGAAGAAAATAATTGTCTGGTTAGCCATTCCTCCAACTGCCACACATGAGCYATCCGGTGACCGCAGGGAGAACGAGAGCAAGGTTACTCTTTTTTTTAATAGTTTTTGGTTGATCATTGTCTCGAATCGTCTTTAAGAAAATTAACCAGCATTCTGAAACCCAAATCATGAATAATGTACGACAGTTTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34143</snp_id>
        <super_contig>c008900855.Contig2</super_contig>
        <contig_pos>44538</contig_pos>
        <strand>+</strand>
        <context>TCATACAAAC[G/T]TGTTGCTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCTTTTATACTTCTAGATTTTCTCTGTAACCTCTCCTCAGTCATACAAAC</left_flank>
        <right_flank>TGTTGCTTCTGTGACGGGTACGGAGCAGTACGACCTGGCACTTATGTACA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGTTTGTGAAATTTAAAAAAACACGACCTTGAAATTTGGGTATATTTATTTCTTGAAGAATCCCAAGTCAAAAGCTGGTTAACTATGTTTCGTCAATTTTTAAAAATACAGTTCTAACCTTGTCCCGGCTAGAGAAGAAAATAATTGTCTGGTTAGCCATTCCTCCAACTGCCACACATGAGCTATCCGGTGACCGCAGGGAGAACGAGAGCAAGGTTACTCTTTTTTTTAATAGTTTTTGGTTGATCATTGTCTCGAATCGTCTTTAAGAAAATTAACCAGCATTCTGAAACCCAAATCATGAATAATGTACGACAGTTTGTCACTTACTTCTTCACCATTTGTAGTCTTAATCATCGGGTATAGAAATATTCAGAAAAATATTTGAAACTTGCAGGCTCCTACACACGGAGCCTTGGGAGAATGAGTTTAGTGTGCAGCTGACCACCTTTTATACTTCTAGATTTTCTCTGTAACCTCTCCTCAGTCATACAAACGTGTTGCTTCTGTGACGGGTACGGAGCAGTACGACCTGGCACTTATGTACATCTTTTTTGGAGTTAGATTTCAAACTCCACCCATTTAATAATTTAATCTACTTTGGTGGTCCTTAAATTCCAAATTGGAGATTTCTCGAGGCACCATAATGAAAGGTGTTCGCTTCTAAATCCGGTCCCCACCAATTTCATATTTCGATATCCTCTTTTCGTGTATTCATATTTCAATTTTACACATTTTGGAAGGCGGTCCATTTGTAACGCTAATTAGTTCTATCCCTCACACCATCCCCCTTATTATCTCCCCTTGGGACTCTAATAGCTAGTTGCGTCTCAAACTTCTTCAAGGGTCCCATTCGTGACATATGTGGAGTTTACCAAACATGATACATAGACTTCTAGTACTGCGAGATTTTGGATTAATCTCTGATATAATTGAAAATGTTGGCACAGTTTTGTGTAAAATTACCAAGTAGAATATTAGCGATGGACAATAAACGA</canonical>
            <polymorphic>AGAGTTTGTGAAATTTAAAAAAACACGACCTTGAAATTTGGGTATATTTATTTCTTGAAGAATCCCAAGTCAAAAGCTGGTTAACTATGTTTCGTCAATTTTTAAAAATACAGTTCTAACCTTGTCCCGGCTAGAGAAGAAAATAATTGTCTGGTTAGCCATTCCTCCAACTGCCACACATGAGCTATCCGGTGACCGCAGGGAGAACGAGAGCAAGGTTACTCTTTTTTTTAATAGTTTTTGGTTGATCATTGTCTCGAATCGTCTTTAAGAAAATTAACCAGCATTCTGAAACCCAAATCATGAATAATGTACGACAGTTTGTCACTTACTTCTTCACCATTTGTAGTCTTAATCATCGGGTATAGAAATATTCAGAAAAATATTTGAAACTTGCAGGCTCCTACACACGGAGCCTTGGGAGAATGAGTTTAGTGTGCAGCTGACCACCTTTTATACTTCTAGATTTTCTCTGTAACCTCTCCTCAGTCATACAAACKTGTTGCTTCTGTGACGGGTACGGAGCAGTACGACCTGGCACTTATGTACATCTTTTTTGGAGTTAGATTTCAAACTCCACCCATTTAATAATTTAATCTACTTTGGTGGTCCTTAAATTCCAAATTGGAGATTTCTCGAGGCACCATAATGAAAGGTGTTCGCTTCTAAATCCGGTCCCCACCAATTTCATATTTCGATATCCTCTTTTCGTGTATTCATATTTCAATTTTACACATTTTGGAAGGCGGTCCATTTGTAACGCTAATTAGTTCTATCCCTCACACCATCCCCCTTATTATCTCCCCTTGGGACTCTAATAGCTAGTTGCGTCTCAAACTTCTTCAAGGGTCCCATTCGTGACATATGTGGAGTTTACCAAACATGATACATAGACTTCTAGTACTGCGAGATTTTGGATTAATCTCTGATATAATTGAAAATGTTGGCACAGTTTTGTGTAAAATTACCAAGTAGAATATTAGCGATGGACAATAAACGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>151 133 80 76 69 53 48 41 39 35 32 29 27 27 23 21 16 15 15 12 11 10 10 10 9 2 2 2 2</canonical_bands>
                <polymorphic_bands>151 133 80 76 69 64 48 41 39 35 32 29 27 27 23 21 16 15 15 12 10 10 10 9 2 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTAGTCTTAATCATCGGGTAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTATTAAATGGGTGGAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTGTAGTCTTAATCATCGGGTATAGAAATATTCAGAAAAATATTTGAAACTTGCAGGCTCCTACACACGGAGCCTTGGGAGAATGAGTTTAGTGTGCAGCTGACCACCTTTTATACTTCTAGATTTTCTCTGTAACCTCTCCTCAGTCATACAAACGTGTTGCTTCTGTGACGGGTACGGAGCAGTACGACCTGGCACTTATGTACATCTTTTTTGGAGTTAGATTTCAAACTCCACCCATTTAATAATTT</canonical_amplicon>
		<polymorphic_amplicon>TTGTAGTCTTAATCATCGGGTATAGAAATATTCAGAAAAATATTTGAAACTTGCAGGCTCCTACACACGGAGCCTTGGGAGAATGAGTTTAGTGTGCAGCTGACCACCTTTTATACTTCTAGATTTTCTCTGTAACCTCTCCTCAGTCATACAAACKTGTTGCTTCTGTGACGGGTACGGAGCAGTACGACCTGGCACTTATGTACATCTTTTTTGGAGTTAGATTTCAAACTCCACCCATTTAATAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34144</snp_id>
        <super_contig>c008900855.Contig2</super_contig>
        <contig_pos>44796</contig_pos>
        <strand>+</strand>
        <context>GGTCCATTTG[G/T]AACGCTAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCGTGTATTCATATTTCAATTTTACACATTTTGGAAGGCGGTCCATTTG</left_flank>
        <right_flank>AACGCTAATTAGTTCTATCCCTCACACCATCCCCCTTATTATCTCCCCTT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATCGTCTTTAAGAAAATTAACCAGCATTCTGAAACCCAAATCATGAATAATGTACGACAGTTTGTCACTTACTTCTTCACCATTTGTAGTCTTAATCATCGGGTATAGAAATATTCAGAAAAATATTTGAAACTTGCAGGCTCCTACACACGGAGCCTTGGGAGAATGAGTTTAGTGTGCAGCTGACCACCTTTTATACTTCTAGATTTTCTCTGTAACCTCTCCTCAGTCATACAAACGTGTTGCTTCTGTGACGGGTACGGAGCAGTACGACCTGGCACTTATGTACATCTTTTTTGGAGTTAGATTTCAAACTCCACCCATTTAATAATTTAATCTACTTTGGTGGTCCTTAAATTCCAAATTGGAGATTTCTCGAGGCACCATAATGAAAGGTGTTCGCTTCTAAATCCGGTCCCCACCAATTTCATATTTCGATATCCTCTTTTCGTGTATTCATATTTCAATTTTACACATTTTGGAAGGCGGTCCATTTGTAACGCTAATTAGTTCTATCCCTCACACCATCCCCCTTATTATCTCCCCTTGGGACTCTAATAGCTAGTTGCGTCTCAAACTTCTTCAAGGGTCCCATTCGTGACATATGTGGAGTTTACCAAACATGATACATAGACTTCTAGTACTGCGAGATTTTGGATTAATCTCTGATATAATTGAAAATGTTGGCACAGTTTTGTGTAAAATTACCAAGTAGAATATTAGCGATGGACAATAAACGAACAACGATTACTGTAACATTCTACCATTTAGTGGGAAAAACATCCAGATGCTTTTGTTGATATACTATCTGAAGTTGAATTTCTTAAAAAATACAGGAACCATCACAGATCCAATAAAACTTGAATAATGAACTTCCACAAATCACCAAAAAGTGTTTATTTTTCAGAAAGTCGAACATCAACCAGAAGCATCGCAGCGCCATCTTCTTTGACTTTATTATGTCAAGTGGAACAATTCATCTGAACTCATGCCTCCAT</canonical>
            <polymorphic>GAATCGTCTTTAAGAAAATTAACCAGCATTCTGAAACCCAAATCATGAATAATGTACGACAGTTTGTCACTTACTTCTTCACCATTTGTAGTCTTAATCATCGGGTATAGAAATATTCAGAAAAATATTTGAAACTTGCAGGCTCCTACACACGGAGCCTTGGGAGAATGAGTTTAGTGTGCAGCTGACCACCTTTTATACTTCTAGATTTTCTCTGTAACCTCTCCTCAGTCATACAAACGTGTTGCTTCTGTGACGGGTACGGAGCAGTACGACCTGGCACTTATGTACATCTTTTTTGGAGTTAGATTTCAAACTCCACCCATTTAATAATTTAATCTACTTTGGTGGTCCTTAAATTCCAAATTGGAGATTTCTCGAGGCACCATAATGAAAGGTGTTCGCTTCTAAATCCGGTCCCCACCAATTTCATATTTCGATATCCTCTTTTCGTGTATTCATATTTCAATTTTACACATTTTGGAAGGCGGTCCATTTGKAACGCTAATTAGTTCTATCCCTCACACCATCCCCCTTATTATCTCCCCTTGGGACTCTAATAGCTAGTTGCGTCTCAAACTTCTTCAAGGGTCCCATTCGTGACATATGTGGAGTTTACCAAACATGATACATAGACTTCTAGTACTGCGAGATTTTGGATTAATCTCTGATATAATTGAAAATGTTGGCACAGTTTTGTGTAAAATTACCAAGTAGAATATTAGCGATGGACAATAAACGAACAACGATTACTGTAACATTCTACCATTTAGTGGGAAAAACATCCAGATGCTTTTGTTGATATACTATCTGAAGTTGAATTTCTTAAAAAATACAGGAACCATCACAGATCCAATAAAACTTGAATAATGAACTTCCACAAATCACCAAAAAGTGTTTATTTTTCAGAAAGTCGAACATCAACCAGAAGCATCGCAGCGCCATCTTCTTTGACTTTATTATGTCAAGTGGAACAATTCATCTGAACTCATGCCTCCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>246 246 155 151 101 65 36</canonical_bands>
                <polymorphic_bands>347 246 155 151 65 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTCTTTTCGTGTATTCATATT</pcr_primer_p1>
		<pcr_primer_p2>GTGCCAACATTTTCAATTATATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCTCTTTTCGTGTATTCATATTTCAATTTTACACATTTTGGAAGGCGGTCCATTTGTAACGCTAATTAGTTCTATCCCTCACACCATCCCCCTTATTATCTCCCCTTGGGACTCTAATAGCTAGTTGCGTCTCAAACTTCTTCAAGGGTCCCATTCGTGACATATGTGGAGTTTACCAAACATGATACATAGACTTCTAGTACTGCGAGATTTTGGATTAATCTCTGATATAATTGAAAATGTTGGCAC</canonical_amplicon>
		<polymorphic_amplicon>TCCTCTTTTCGTGTATTCATATTTCAATTTTACACATTTTGGAAGGCGGTCCATTTGKAACGCTAATTAGTTCTATCCCTCACACCATCCCCCTTATTATCTCCCCTTGGGACTCTAATAGCTAGTTGCGTCTCAAACTTCTTCAAGGGTCCCATTCGTGACATATGTGGAGTTTACCAAACATGATACATAGACTTCTAGTACTGCGAGATTTTGGATTAATCTCTGATATAATTGAAAATGTTGGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34145</snp_id>
        <super_contig>c008900855.Contig2</super_contig>
        <contig_pos>44846</contig_pos>
        <strand>+</strand>
        <context>TATCTCCCCT[A/T]GGGACTCTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAACGCTAATTAGTTCTATCCCTCACACCATCCCCCTTATTATCTCCCCT</left_flank>
        <right_flank>GGGACTCTAATAGCTAGTTGCGTCTCAAACTTCTTCAAGGGTCCCATTCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGTACGACAGTTTGTCACTTACTTCTTCACCATTTGTAGTCTTAATCATCGGGTATAGAAATATTCAGAAAAATATTTGAAACTTGCAGGCTCCTACACACGGAGCCTTGGGAGAATGAGTTTAGTGTGCAGCTGACCACCTTTTATACTTCTAGATTTTCTCTGTAACCTCTCCTCAGTCATACAAACGTGTTGCTTCTGTGACGGGTACGGAGCAGTACGACCTGGCACTTATGTACATCTTTTTTGGAGTTAGATTTCAAACTCCACCCATTTAATAATTTAATCTACTTTGGTGGTCCTTAAATTCCAAATTGGAGATTTCTCGAGGCACCATAATGAAAGGTGTTCGCTTCTAAATCCGGTCCCCACCAATTTCATATTTCGATATCCTCTTTTCGTGTATTCATATTTCAATTTTACACATTTTGGAAGGCGGTCCATTTGTAACGCTAATTAGTTCTATCCCTCACACCATCCCCCTTATTATCTCCCCTTGGGACTCTAATAGCTAGTTGCGTCTCAAACTTCTTCAAGGGTCCCATTCGTGACATATGTGGAGTTTACCAAACATGATACATAGACTTCTAGTACTGCGAGATTTTGGATTAATCTCTGATATAATTGAAAATGTTGGCACAGTTTTGTGTAAAATTACCAAGTAGAATATTAGCGATGGACAATAAACGAACAACGATTACTGTAACATTCTACCATTTAGTGGGAAAAACATCCAGATGCTTTTGTTGATATACTATCTGAAGTTGAATTTCTTAAAAAATACAGGAACCATCACAGATCCAATAAAACTTGAATAATGAACTTCCACAAATCACCAAAAAGTGTTTATTTTTCAGAAAGTCGAACATCAACCAGAAGCATCGCAGCGCCATCTTCTTTGACTTTATTATGTCAAGTGGAACAATTCATCTGAACTCATGCCTCCATTTTATTCATATTTTTCTTCTCTGGAAGCAGCTAGATCAAGGTCAGTTTTC</canonical>
            <polymorphic>AATGTACGACAGTTTGTCACTTACTTCTTCACCATTTGTAGTCTTAATCATCGGGTATAGAAATATTCAGAAAAATATTTGAAACTTGCAGGCTCCTACACACGGAGCCTTGGGAGAATGAGTTTAGTGTGCAGCTGACCACCTTTTATACTTCTAGATTTTCTCTGTAACCTCTCCTCAGTCATACAAACGTGTTGCTTCTGTGACGGGTACGGAGCAGTACGACCTGGCACTTATGTACATCTTTTTTGGAGTTAGATTTCAAACTCCACCCATTTAATAATTTAATCTACTTTGGTGGTCCTTAAATTCCAAATTGGAGATTTCTCGAGGCACCATAATGAAAGGTGTTCGCTTCTAAATCCGGTCCCCACCAATTTCATATTTCGATATCCTCTTTTCGTGTATTCATATTTCAATTTTACACATTTTGGAAGGCGGTCCATTTGTAACGCTAATTAGTTCTATCCCTCACACCATCCCCCTTATTATCTCCCCTWGGGACTCTAATAGCTAGTTGCGTCTCAAACTTCTTCAAGGGTCCCATTCGTGACATATGTGGAGTTTACCAAACATGATACATAGACTTCTAGTACTGCGAGATTTTGGATTAATCTCTGATATAATTGAAAATGTTGGCACAGTTTTGTGTAAAATTACCAAGTAGAATATTAGCGATGGACAATAAACGAACAACGATTACTGTAACATTCTACCATTTAGTGGGAAAAACATCCAGATGCTTTTGTTGATATACTATCTGAAGTTGAATTTCTTAAAAAATACAGGAACCATCACAGATCCAATAAAACTTGAATAATGAACTTCCACAAATCACCAAAAAGTGTTTATTTTTCAGAAAGTCGAACATCAACCAGAAGCATCGCAGCGCCATCTTCTTTGACTTTATTATGTCAAGTGGAACAATTCATCTGAACTCATGCCTCCATTTTATTCATATTTTTCTTCTCTGGAAGCAGCTAGATCAAGGTCAGTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>503 389 108</canonical_bands>
                <polymorphic_bands>892 108</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTCTTTTCGTGTATTCATATT</pcr_primer_p1>
		<pcr_primer_p2>GTGCCAACATTTTCAATTATATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCTCTTTTCGTGTATTCATATTTCAATTTTACACATTTTGGAAGGCGGTCCATTTGTAACGCTAATTAGTTCTATCCCTCACACCATCCCCCTTATTATCTCCCCTTGGGACTCTAATAGCTAGTTGCGTCTCAAACTTCTTCAAGGGTCCCATTCGTGACATATGTGGAGTTTACCAAACATGATACATAGACTTCTAGTACTGCGAGATTTTGGATTAATCTCTGATATAATTGAAAATGTTGGCAC</canonical_amplicon>
		<polymorphic_amplicon>TCCTCTTTTCGTGTATTCATATTTCAATTTTACACATTTTGGAAGGCGGTCCATTTGTAACGCTAATTAGTTCTATCCCTCACACCATCCCCCTTATTATCTCCCCTWGGGACTCTAATAGCTAGTTGCGTCTCAAACTTCTTCAAGGGTCCCATTCGTGACATATGTGGAGTTTACCAAACATGATACATAGACTTCTAGTACTGCGAGATTTTGGATTAATCTCTGATATAATTGAAAATGTTGGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34146</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>6478</contig_pos>
        <strand></strand>
        <context>tttgccggtg[G/T]attggaacct</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAAAATCATTTTCTAAGCTTTTAAAGCTCGATTTTTAATTTTGCCGGTG</left_flank>
        <right_flank>ATTGGAACCTGAGACCCTTTGGCTCCAAAACTTCGGCCGAAAATCCCACT</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAACAACTTCCGGTTGAGAGTCAGATGGTCTCTCGACTGACGGACATGCTCAACGCGGAAGTTGTGCTGGGTACGGTTAGCAGTGTTTCGGAGGCCACGAACTGGTTGGGATACACTTTCCTGTTTGTGAGAATGTTGAAGAATCCAACGCTCTATGGAATTACGCATGAGCAAGCGGTAAGTGATTTTTGAAACCTCAATTTTCGAATTTCCCGCCCCTGAAAACTCCTAAAAACGTTTTCAAAAACAATTTGCCACTGGTGGGGTTCGAACCCAAGACCCCTTGGCTCCAAAATTTCAGACGAAAATCCCACTAGGCCATCTGAGCAAATTTAGAAAACTTTGATTTTTGGACCGAAATATGGGTTTTTAAAACGTTTCGAGGTATTTTGAGCATAAAAATGACGATATTTGAAGTTTTGATGACAATAAAGGTTCAAAAAGGTCCGAAAAATCATTTTCTAAGCTTTTAAAGCTCGATTTTTAATTTTGCCGGTGGATTGGAACCTGAGACCCTTTGGCTCCAAAACTTCGGCCGAAAATCCCACTTTGCCATCAGAGCAAATTTTGACAAATCTAGTTTTTAGACCGGAATATGGGTTTTTAGGGGATTTGAAGGTGTTTTGAGCATAAAAATGACGATTTTTGTGCCTAAAAATAGCTTTTCGATGTAATTTTTAATTTTGATGTGAATCTACGTGCTTTTCTGCACAAAATGAAGCGAACACCATATCTAAATTAATTTTTTCTAATCATAGTTTTTTTCCAGCGCGCCGATCCACTTCTCGAACAACGTCGTGCCGATCTGATCCACACCGCGTGCGTCCTCCTCGACAAGGCCGGTCTCATCAAATACGACAAACGATCCGGAATCATCCAGGCGACAGAACTCGGACGCATCGCTTCCCACTTCTACTGTACCTATGAATCCATGCAAACCTACAACAAGCTGCTCATCGAGACGTGCTCCGATATCGATCTCTTCCGAATCTTCTCAAT</canonical>
            <polymorphic>TCAACAACTTCCGGTTGAGAGTCAGATGGTCTCTCGACTGACGGACATGCTCAACGCGGAAGTTGTGCTGGGTACGGTTAGCAGTGTTTCGGAGGCCACGAACTGGTTGGGATACACTTTCCTGTTTGTGAGAATGTTGAAGAATCCAACGCTCTATGGAATTACGCATGAGCAAGCGGTAAGTGATTTTTGAAACCTCAATTTTCGAATTTCCCGCCCCTGAAAACTCCTAAAAACGTTTTCAAAAACAATTTGCCACTGGTGGGGTTCGAACCCAAGACCCCTTGGCTCCAAAATTTCAGACGAAAATCCCACTAGGCCATCTGAGCAAATTTAGAAAACTTTGATTTTTGGACCGAAATATGGGTTTTTAAAACGTTTCGAGGTATTTTGAGCATAAAAATGACGATATTTGAAGTTTTGATGACAATAAAGGTTCAAAAAGGTCCGAAAAATCATTTTCTAAGCTTTTAAAGCTCGATTTTTAATTTTGCCGGTGKATTGGAACCTGAGACCCTTTGGCTCCAAAACTTCGGCCGAAAATCCCACTTTGCCATCAGAGCAAATTTTGACAAATCTAGTTTTTAGACCGGAATATGGGTTTTTAGGGGATTTGAAGGTGTTTTGAGCATAAAAATGACGATTTTTGTGCCTAAAAATAGCTTTTCGATGTAATTTTTAATTTTGATGTGAATCTACGTGCTTTTCTGCACAAAATGAAGCGAACACCATATCTAAATTAATTTTTTCTAATCATAGTTTTTTTCCAGCGCGCCGATCCACTTCTCGAACAACGTCGTGCCGATCTGATCCACACCGCGTGCGTCCTCCTCGACAAGGCCGGTCTCATCAAATACGACAAACGATCCGGAATCATCCAGGCGACAGAACTCGGACGCATCGCTTCCCACTTCTACTGTACCTATGAATCCATGCAAACCTACAACAAGCTGCTCATCGAGACGTGCTCCGATATCGATCTCTTCCGAATCTTCTCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACGCTCTATGGAATTACG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTAGGCACAAAAATCGT</pcr_primer_p2>
		<pcr_amplicon_size>513</pcr_amplicon_size>
		<canonical_amplicon>CAACGCTCTATGGAATTACGCATGAGCAAGCGGTAAGTGATTTTTGAAACCTCAATTTTCGAATTTCCCGCCCCTGAAAACTCCTAAAAACGTTTTCAAAAACAATTTGCCACTGGTGGGGTTCGAACCCAAGACCCCTTGGCTCCAAAATTTCAGACGAAAATCCCACTAGGCCATCTGAGCAAATTTAGAAAACTTTGATTTTTGGACCGAAATATGGGTTTTTAAAACGTTTCGAGGTATTTTGAGCATAAAAATGACGATATTTGAAGTTTTGATGACAATAAAGGTTCAAAAAGGTCCGAAAAATCATTTTCTAAGCTTTTAAAGCTCGATTTTTAATTTTGCCGGTGGATTGGAACCTGAGACCCTTTGGCTCCAAAACTTCGGCCGAAAATCCCACTTTGCCATCAGAGCAAATTTTGACAAATCTAGTTTTTAGACCGGAATATGGGTTTTTAGGGGATTTGAAGGTGTTTTGAGCATAAAAATGACGATTTTTGTGCCTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CAACGCTCTATGGAATTACGCATGAGCAAGCGGTAAGTGATTTTTGAAACCTCAATTTTCGAATTTCCCGCCCCTGAAAACTCCTAAAAACGTTTTCAAAAACAATTTGCCACTGGTGGGGTTCGAACCCAAGACCCCTTGGCTCCAAAATTTCAGACGAAAATCCCACTAGGCCATCTGAGCAAATTTAGAAAACTTTGATTTTTGGACCGAAATATGGGTTTTTAAAACGTTTCGAGGTATTTTGAGCATAAAAATGACGATATTTGAAGTTTTGATGACAATAAAGGTTCAAAAAGGTCCGAAAAATCATTTTCTAAGCTTTTAAAGCTCGATTTTTAATTTTGCCGGTGKATTGGAACCTGAGACCCTTTGGCTCCAAAACTTCGGCCGAAAATCCCACTTTGCCATCAGAGCAAATTTTGACAAATCTAGTTTTTAGACCGGAATATGGGTTTTTAGGGGATTTGAAGGTGTTTTGAGCATAAAAATGACGATTTTTGTGCCTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34147</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>6524</contig_pos>
        <strand></strand>
        <context>gccgaaaatc[C/T]cactttgcca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTGGATTGGAACCTGAGACCCTTTGGCTCCAAAACTTCGGCCGAAAATC</left_flank>
        <right_flank>CACTTTGCCATCAGAGCAAATTTTGACAAATCTAGTTTTTAGACCGGAAT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCTCAACGCGGAAGTTGTGCTGGGTACGGTTAGCAGTGTTTCGGAGGCCACGAACTGGTTGGGATACACTTTCCTGTTTGTGAGAATGTTGAAGAATCCAACGCTCTATGGAATTACGCATGAGCAAGCGGTAAGTGATTTTTGAAACCTCAATTTTCGAATTTCCCGCCCCTGAAAACTCCTAAAAACGTTTTCAAAAACAATTTGCCACTGGTGGGGTTCGAACCCAAGACCCCTTGGCTCCAAAATTTCAGACGAAAATCCCACTAGGCCATCTGAGCAAATTTAGAAAACTTTGATTTTTGGACCGAAATATGGGTTTTTAAAACGTTTCGAGGTATTTTGAGCATAAAAATGACGATATTTGAAGTTTTGATGACAATAAAGGTTCAAAAAGGTCCGAAAAATCATTTTCTAAGCTTTTAAAGCTCGATTTTTAATTTTGCCGGTGGATTGGAACCTGAGACCCTTTGGCTCCAAAACTTCGGCCGAAAATCCCACTTTGCCATCAGAGCAAATTTTGACAAATCTAGTTTTTAGACCGGAATATGGGTTTTTAGGGGATTTGAAGGTGTTTTGAGCATAAAAATGACGATTTTTGTGCCTAAAAATAGCTTTTCGATGTAATTTTTAATTTTGATGTGAATCTACGTGCTTTTCTGCACAAAATGAAGCGAACACCATATCTAAATTAATTTTTTCTAATCATAGTTTTTTTCCAGCGCGCCGATCCACTTCTCGAACAACGTCGTGCCGATCTGATCCACACCGCGTGCGTCCTCCTCGACAAGGCCGGTCTCATCAAATACGACAAACGATCCGGAATCATCCAGGCGACAGAACTCGGACGCATCGCTTCCCACTTCTACTGTACCTATGAATCCATGCAAACCTACAACAAGCTGCTCATCGAGACGTGCTCCGATATCGATCTCTTCCGAATCTTCTCAATGAGCTCTGAATTCAAATTGCTCTCCGTTAGAGATGAAGAGAAATTG</canonical>
            <polymorphic>ATGCTCAACGCGGAAGTTGTGCTGGGTACGGTTAGCAGTGTTTCGGAGGCCACGAACTGGTTGGGATACACTTTCCTGTTTGTGAGAATGTTGAAGAATCCAACGCTCTATGGAATTACGCATGAGCAAGCGGTAAGTGATTTTTGAAACCTCAATTTTCGAATTTCCCGCCCCTGAAAACTCCTAAAAACGTTTTCAAAAACAATTTGCCACTGGTGGGGTTCGAACCCAAGACCCCTTGGCTCCAAAATTTCAGACGAAAATCCCACTAGGCCATCTGAGCAAATTTAGAAAACTTTGATTTTTGGACCGAAATATGGGTTTTTAAAACGTTTCGAGGTATTTTGAGCATAAAAATGACGATATTTGAAGTTTTGATGACAATAAAGGTTCAAAAAGGTCCGAAAAATCATTTTCTAAGCTTTTAAAGCTCGATTTTTAATTTTGCCGGTGGATTGGAACCTGAGACCCTTTGGCTCCAAAACTTCGGCCGAAAATCYCACTTTGCCATCAGAGCAAATTTTGACAAATCTAGTTTTTAGACCGGAATATGGGTTTTTAGGGGATTTGAAGGTGTTTTGAGCATAAAAATGACGATTTTTGTGCCTAAAAATAGCTTTTCGATGTAATTTTTAATTTTGATGTGAATCTACGTGCTTTTCTGCACAAAATGAAGCGAACACCATATCTAAATTAATTTTTTCTAATCATAGTTTTTTTCCAGCGCGCCGATCCACTTCTCGAACAACGTCGTGCCGATCTGATCCACACCGCGTGCGTCCTCCTCGACAAGGCCGGTCTCATCAAATACGACAAACGATCCGGAATCATCCAGGCGACAGAACTCGGACGCATCGCTTCCCACTTCTACTGTACCTATGAATCCATGCAAACCTACAACAAGCTGCTCATCGAGACGTGCTCCGATATCGATCTCTTCCGAATCTTCTCAATGAGCTCTGAATTCAAATTGCTCTCCGTTAGAGATGAAGAGAAATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACGCTCTATGGAATTACG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTAGGCACAAAAATCGT</pcr_primer_p2>
		<pcr_amplicon_size>513</pcr_amplicon_size>
		<canonical_amplicon>CAACGCTCTATGGAATTACGCATGAGCAAGCGGTAAGTGATTTTTGAAACCTCAATTTTCGAATTTCCCGCCCCTGAAAACTCCTAAAAACGTTTTCAAAAACAATTTGCCACTGGTGGGGTTCGAACCCAAGACCCCTTGGCTCCAAAATTTCAGACGAAAATCCCACTAGGCCATCTGAGCAAATTTAGAAAACTTTGATTTTTGGACCGAAATATGGGTTTTTAAAACGTTTCGAGGTATTTTGAGCATAAAAATGACGATATTTGAAGTTTTGATGACAATAAAGGTTCAAAAAGGTCCGAAAAATCATTTTCTAAGCTTTTAAAGCTCGATTTTTAATTTTGCCGGTGGATTGGAACCTGAGACCCTTTGGCTCCAAAACTTCGGCCGAAAATCCCACTTTGCCATCAGAGCAAATTTTGACAAATCTAGTTTTTAGACCGGAATATGGGTTTTTAGGGGATTTGAAGGTGTTTTGAGCATAAAAATGACGATTTTTGTGCCTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CAACGCTCTATGGAATTACGCATGAGCAAGCGGTAAGTGATTTTTGAAACCTCAATTTTCGAATTTCCCGCCCCTGAAAACTCCTAAAAACGTTTTCAAAAACAATTTGCCACTGGTGGGGTTCGAACCCAAGACCCCTTGGCTCCAAAATTTCAGACGAAAATCCCACTAGGCCATCTGAGCAAATTTAGAAAACTTTGATTTTTGGACCGAAATATGGGTTTTTAAAACGTTTCGAGGTATTTTGAGCATAAAAATGACGATATTTGAAGTTTTGATGACAATAAAGGTTCAAAAAGGTCCGAAAAATCATTTTCTAAGCTTTTAAAGCTCGATTTTTAATTTTGCCGGTGGATTGGAACCTGAGACCCTTTGGCTCCAAAACTTCGGCCGAAAATCYCACTTTGCCATCAGAGCAAATTTTGACAAATCTAGTTTTTAGACCGGAATATGGGTTTTTAGGGGATTTGAAGGTGTTTTGAGCATAAAAATGACGATTTTTGTGCCTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34148</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>6548</contig_pos>
        <strand></strand>
        <context>gagcaaattt[T/C]gacaaatcta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGGCTCCAAAACTTCGGCCGAAAATCCCACTTTGCCATCAGAGCAAATTT</left_flank>
        <right_flank>GACAAATCTAGTTTTTAGACCGGAATATGGGTTTTTAGGGGATTTGAAGG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTACGGTTAGCAGTGTTTCGGAGGCCACGAACTGGTTGGGATACACTTTCCTGTTTGTGAGAATGTTGAAGAATCCAACGCTCTATGGAATTACGCATGAGCAAGCGGTAAGTGATTTTTGAAACCTCAATTTTCGAATTTCCCGCCCCTGAAAACTCCTAAAAACGTTTTCAAAAACAATTTGCCACTGGTGGGGTTCGAACCCAAGACCCCTTGGCTCCAAAATTTCAGACGAAAATCCCACTAGGCCATCTGAGCAAATTTAGAAAACTTTGATTTTTGGACCGAAATATGGGTTTTTAAAACGTTTCGAGGTATTTTGAGCATAAAAATGACGATATTTGAAGTTTTGATGACAATAAAGGTTCAAAAAGGTCCGAAAAATCATTTTCTAAGCTTTTAAAGCTCGATTTTTAATTTTGCCGGTGGATTGGAACCTGAGACCCTTTGGCTCCAAAACTTCGGCCGAAAATCCCACTTTGCCATCAGAGCAAATTTTGACAAATCTAGTTTTTAGACCGGAATATGGGTTTTTAGGGGATTTGAAGGTGTTTTGAGCATAAAAATGACGATTTTTGTGCCTAAAAATAGCTTTTCGATGTAATTTTTAATTTTGATGTGAATCTACGTGCTTTTCTGCACAAAATGAAGCGAACACCATATCTAAATTAATTTTTTCTAATCATAGTTTTTTTCCAGCGCGCCGATCCACTTCTCGAACAACGTCGTGCCGATCTGATCCACACCGCGTGCGTCCTCCTCGACAAGGCCGGTCTCATCAAATACGACAAACGATCCGGAATCATCCAGGCGACAGAACTCGGACGCATCGCTTCCCACTTCTACTGTACCTATGAATCCATGCAAACCTACAACAAGCTGCTCATCGAGACGTGCTCCGATATCGATCTCTTCCGAATCTTCTCAATGAGCTCTGAATTCAAATTGCTCTCCGTTAGAGATGAAGAGAAATTGGAGCTTCAGAAGCTCGCCGAGCAC</canonical>
            <polymorphic>GGTACGGTTAGCAGTGTTTCGGAGGCCACGAACTGGTTGGGATACACTTTCCTGTTTGTGAGAATGTTGAAGAATCCAACGCTCTATGGAATTACGCATGAGCAAGCGGTAAGTGATTTTTGAAACCTCAATTTTCGAATTTCCCGCCCCTGAAAACTCCTAAAAACGTTTTCAAAAACAATTTGCCACTGGTGGGGTTCGAACCCAAGACCCCTTGGCTCCAAAATTTCAGACGAAAATCCCACTAGGCCATCTGAGCAAATTTAGAAAACTTTGATTTTTGGACCGAAATATGGGTTTTTAAAACGTTTCGAGGTATTTTGAGCATAAAAATGACGATATTTGAAGTTTTGATGACAATAAAGGTTCAAAAAGGTCCGAAAAATCATTTTCTAAGCTTTTAAAGCTCGATTTTTAATTTTGCCGGTGGATTGGAACCTGAGACCCTTTGGCTCCAAAACTTCGGCCGAAAATCCCACTTTGCCATCAGAGCAAATTTYGACAAATCTAGTTTTTAGACCGGAATATGGGTTTTTAGGGGATTTGAAGGTGTTTTGAGCATAAAAATGACGATTTTTGTGCCTAAAAATAGCTTTTCGATGTAATTTTTAATTTTGATGTGAATCTACGTGCTTTTCTGCACAAAATGAAGCGAACACCATATCTAAATTAATTTTTTCTAATCATAGTTTTTTTCCAGCGCGCCGATCCACTTCTCGAACAACGTCGTGCCGATCTGATCCACACCGCGTGCGTCCTCCTCGACAAGGCCGGTCTCATCAAATACGACAAACGATCCGGAATCATCCAGGCGACAGAACTCGGACGCATCGCTTCCCACTTCTACTGTACCTATGAATCCATGCAAACCTACAACAAGCTGCTCATCGAGACGTGCTCCGATATCGATCTCTTCCGAATCTTCTCAATGAGCTCTGAATTCAAATTGCTCTCCGTTAGAGATGAAGAGAAATTGGAGCTTCAGAAGCTCGCCGAGCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACGCTCTATGGAATTACG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTAGGCACAAAAATCGT</pcr_primer_p2>
		<pcr_amplicon_size>513</pcr_amplicon_size>
		<canonical_amplicon>CAACGCTCTATGGAATTACGCATGAGCAAGCGGTAAGTGATTTTTGAAACCTCAATTTTCGAATTTCCCGCCCCTGAAAACTCCTAAAAACGTTTTCAAAAACAATTTGCCACTGGTGGGGTTCGAACCCAAGACCCCTTGGCTCCAAAATTTCAGACGAAAATCCCACTAGGCCATCTGAGCAAATTTAGAAAACTTTGATTTTTGGACCGAAATATGGGTTTTTAAAACGTTTCGAGGTATTTTGAGCATAAAAATGACGATATTTGAAGTTTTGATGACAATAAAGGTTCAAAAAGGTCCGAAAAATCATTTTCTAAGCTTTTAAAGCTCGATTTTTAATTTTGCCGGTGGATTGGAACCTGAGACCCTTTGGCTCCAAAACTTCGGCCGAAAATCCCACTTTGCCATCAGAGCAAATTTTGACAAATCTAGTTTTTAGACCGGAATATGGGTTTTTAGGGGATTTGAAGGTGTTTTGAGCATAAAAATGACGATTTTTGTGCCTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CAACGCTCTATGGAATTACGCATGAGCAAGCGGTAAGTGATTTTTGAAACCTCAATTTTCGAATTTCCCGCCCCTGAAAACTCCTAAAAACGTTTTCAAAAACAATTTGCCACTGGTGGGGTTCGAACCCAAGACCCCTTGGCTCCAAAATTTCAGACGAAAATCCCACTAGGCCATCTGAGCAAATTTAGAAAACTTTGATTTTTGGACCGAAATATGGGTTTTTAAAACGTTTCGAGGTATTTTGAGCATAAAAATGACGATATTTGAAGTTTTGATGACAATAAAGGTTCAAAAAGGTCCGAAAAATCATTTTCTAAGCTTTTAAAGCTCGATTTTTAATTTTGCCGGTGGATTGGAACCTGAGACCCTTTGGCTCCAAAACTTCGGCCGAAAATCCCACTTTGCCATCAGAGCAAATTTYGACAAATCTAGTTTTTAGACCGGAATATGGGTTTTTAGGGGATTTGAAGGTGTTTTGAGCATAAAAATGACGATTTTTGTGCCTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34149</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>6669</contig_pos>
        <strand>+</strand>
        <context>aattttgatg[A/G]gaatctacgt</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGATTTTTGTGCCTAAAAATAGCTTTTCGATGTAATTTTTAATTTTGATG</left_flank>
        <right_flank>GAATCTACGTGCTTTTCTGCACAAAATGAAGCGAACACCATATCTAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAACCTCAATTTTCGAATTTCCCGCCCCTGAAAACTCCTAAAAACGTTTTCAAAAACAATTTGCCACTGGTGGGGTTCGAACCCAAGACCCCTTGGCTCCAAAATTTCAGACGAAAATCCCACTAGGCCATCTGAGCAAATTTAGAAAACTTTGATTTTTGGACCGAAATATGGGTTTTTAAAACGTTTCGAGGTATTTTGAGCATAAAAATGACGATATTTGAAGTTTTGATGACAATAAAGGTTCAAAAAGGTCCGAAAAATCATTTTCTAAGCTTTTAAAGCTCGATTTTTAATTTTGCCGGTGGATTGGAACCTGAGACCCTTTGGCTCCAAAACTTCGGCCGAAAATCCCACTTTGCCATCAGAGCAAATTTTGACAAATCTAGTTTTTAGACCGGAATATGGGTTTTTAGGGGATTTGAAGGTGTTTTGAGCATAAAAATGACGATTTTTGTGCCTAAAAATAGCTTTTCGATGTAATTTTTAATTTTGATGTGAATCTACGTGCTTTTCTGCACAAAATGAAGCGAACACCATATCTAAATTAATTTTTTCTAATCATAGTTTTTTTCCAGCGCGCCGATCCACTTCTCGAACAACGTCGTGCCGATCTGATCCACACCGCGTGCGTCCTCCTCGACAAGGCCGGTCTCATCAAATACGACAAACGATCCGGAATCATCCAGGCGACAGAACTCGGACGCATCGCTTCCCACTTCTACTGTACCTATGAATCCATGCAAACCTACAACAAGCTGCTCATCGAGACGTGCTCCGATATCGATCTCTTCCGAATCTTCTCAATGAGCTCTGAATTCAAATTGCTCTCCGTTAGAGATGAAGAGAAATTGGAGCTTCAGAAGCTCGCCGAGCACGCCCCGATTCCCATCAAAGAGAATTTAGACGAAGCATCTGCCAAGACCAATGTCCTCCTTCAAGCCTACATTTCTCAGTTGAAATTGGAAGGATTCGCTCTTCAAGCTGATATGGTCTTCG</canonical>
            <polymorphic>GAAACCTCAATTTTCGAATTTCCCGCCCCTGAAAACTCCTAAAAACGTTTTCAAAAACAATTTGCCACTGGTGGGGTTCGAACCCAAGACCCCTTGGCTCCAAAATTTCAGACGAAAATCCCACTAGGCCATCTGAGCAAATTTAGAAAACTTTGATTTTTGGACCGAAATATGGGTTTTTAAAACGTTTCGAGGTATTTTGAGCATAAAAATGACGATATTTGAAGTTTTGATGACAATAAAGGTTCAAAAAGGTCCGAAAAATCATTTTCTAAGCTTTTAAAGCTCGATTTTTAATTTTGCCGGTGGATTGGAACCTGAGACCCTTTGGCTCCAAAACTTCGGCCGAAAATCCCACTTTGCCATCAGAGCAAATTTTGACAAATCTAGTTTTTAGACCGGAATATGGGTTTTTAGGGGATTTGAAGGTGTTTTGAGCATAAAAATGACGATTTTTGTGCCTAAAAATAGCTTTTCGATGTAATTTTTAATTTTGATGRGAATCTACGTGCTTTTCTGCACAAAATGAAGCGAACACCATATCTAAATTAATTTTTTCTAATCATAGTTTTTTTCCAGCGCGCCGATCCACTTCTCGAACAACGTCGTGCCGATCTGATCCACACCGCGTGCGTCCTCCTCGACAAGGCCGGTCTCATCAAATACGACAAACGATCCGGAATCATCCAGGCGACAGAACTCGGACGCATCGCTTCCCACTTCTACTGTACCTATGAATCCATGCAAACCTACAACAAGCTGCTCATCGAGACGTGCTCCGATATCGATCTCTTCCGAATCTTCTCAATGAGCTCTGAATTCAAATTGCTCTCCGTTAGAGATGAAGAGAAATTGGAGCTTCAGAAGCTCGCCGAGCACGCCCCGATTCCCATCAAAGAGAATTTAGACGAAGCATCTGCCAAGACCAATGTCCTCCTTCAAGCCTACATTTCTCAGTTGAAATTGGAAGGATTCGCTCTTCAAGCTGATATGGTCTTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>185 122 102 87 74 67 57 54 50 49 41 29 19 16 13 10 10 7 6 2</canonical_bands>
                <polymorphic_bands>185 122 102 87 74 67 57 54 51 50 49 29 19 16 13 10 7 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACGCTCTATGGAATTACG</pcr_primer_p1>
		<pcr_primer_p2>GCATGGATTCATAGGTACAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>790</pcr_amplicon_size>
		<canonical_amplicon>GTGAATCTACGTGCTTTTCTGCACAAAATGAAGCGAACACCATATCTAAATTAATTTTTTCTAATCATAGTTTTTTTCCAGCGCGCCGATCCACTTCTCGAACAACGTCGTGCCGATCTGATCCACACCGCGTGCGTCCTCCTCGACAAGGCCGGTCTCATCAAATACGACAAACGATCCGGAATCATCCAGGCGACAGAACTCGGACGCATCGCTTCCCACTTCTACTGTACCTATGAATCCATGC</canonical_amplicon>
		<polymorphic_amplicon>GRGAATCTACGTGCTTTTCTGCACAAAATGAAGCGAACACCATATCTAAATTAATTTTTTCTAATCATAGTTTTTTTCCAGCGCGCCGATCCACTTCTCGAACAACGTCGTGCCGATCTGATCCACACCGCGTGCGTCCTCCTCGACAAGGCCGGTCTCATCAAATACGACAAACGATCCGGAATCATCCAGGCGACAGAACTCGGACGCATCGCTTCCCACTTCTACTGTACCTATGAATCCATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34150</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>6717</contig_pos>
        <strand></strand>
        <context>CCATATCTAA[A/G]TTAATTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTGAATCTACGTGCTTTTCTGCACAAAATGAAGCGAACACCATATCTAA</left_flank>
        <right_flank>TTAATTTTTTCTAATCATAGTTTTTTTCCAGCGCGCCGATCCACTTCTCG</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCAAAAACAATTTGCCACTGGTGGGGTTCGAACCCAAGACCCCTTGGCTCCAAAATTTCAGACGAAAATCCCACTAGGCCATCTGAGCAAATTTAGAAAACTTTGATTTTTGGACCGAAATATGGGTTTTTAAAACGTTTCGAGGTATTTTGAGCATAAAAATGACGATATTTGAAGTTTTGATGACAATAAAGGTTCAAAAAGGTCCGAAAAATCATTTTCTAAGCTTTTAAAGCTCGATTTTTAATTTTGCCGGTGGATTGGAACCTGAGACCCTTTGGCTCCAAAACTTCGGCCGAAAATCCCACTTTGCCATCAGAGCAAATTTTGACAAATCTAGTTTTTAGACCGGAATATGGGTTTTTAGGGGATTTGAAGGTGTTTTGAGCATAAAAATGACGATTTTTGTGCCTAAAAATAGCTTTTCGATGTAATTTTTAATTTTGATGTGAATCTACGTGCTTTTCTGCACAAAATGAAGCGAACACCATATCTAAATTAATTTTTTCTAATCATAGTTTTTTTCCAGCGCGCCGATCCACTTCTCGAACAACGTCGTGCCGATCTGATCCACACCGCGTGCGTCCTCCTCGACAAGGCCGGTCTCATCAAATACGACAAACGATCCGGAATCATCCAGGCGACAGAACTCGGACGCATCGCTTCCCACTTCTACTGTACCTATGAATCCATGCAAACCTACAACAAGCTGCTCATCGAGACGTGCTCCGATATCGATCTCTTCCGAATCTTCTCAATGAGCTCTGAATTCAAATTGCTCTCCGTTAGAGATGAAGAGAAATTGGAGCTTCAGAAGCTCGCCGAGCACGCCCCGATTCCCATCAAAGAGAATTTAGACGAAGCATCTGCCAAGACCAATGTCCTCCTTCAAGCCTACATTTCTCAGTTGAAATTGGAAGGATTCGCTCTTCAAGCTGATATGGTCTTCGTTGCTCAATCAGCTGGACGTCTGTTCCGTGCTCTATTCGAGATTGTTC</canonical>
            <polymorphic>TTTCAAAAACAATTTGCCACTGGTGGGGTTCGAACCCAAGACCCCTTGGCTCCAAAATTTCAGACGAAAATCCCACTAGGCCATCTGAGCAAATTTAGAAAACTTTGATTTTTGGACCGAAATATGGGTTTTTAAAACGTTTCGAGGTATTTTGAGCATAAAAATGACGATATTTGAAGTTTTGATGACAATAAAGGTTCAAAAAGGTCCGAAAAATCATTTTCTAAGCTTTTAAAGCTCGATTTTTAATTTTGCCGGTGGATTGGAACCTGAGACCCTTTGGCTCCAAAACTTCGGCCGAAAATCCCACTTTGCCATCAGAGCAAATTTTGACAAATCTAGTTTTTAGACCGGAATATGGGTTTTTAGGGGATTTGAAGGTGTTTTGAGCATAAAAATGACGATTTTTGTGCCTAAAAATAGCTTTTCGATGTAATTTTTAATTTTGATGTGAATCTACGTGCTTTTCTGCACAAAATGAAGCGAACACCATATCTAARTTAATTTTTTCTAATCATAGTTTTTTTCCAGCGCGCCGATCCACTTCTCGAACAACGTCGTGCCGATCTGATCCACACCGCGTGCGTCCTCCTCGACAAGGCCGGTCTCATCAAATACGACAAACGATCCGGAATCATCCAGGCGACAGAACTCGGACGCATCGCTTCCCACTTCTACTGTACCTATGAATCCATGCAAACCTACAACAAGCTGCTCATCGAGACGTGCTCCGATATCGATCTCTTCCGAATCTTCTCAATGAGCTCTGAATTCAAATTGCTCTCCGTTAGAGATGAAGAGAAATTGGAGCTTCAGAAGCTCGCCGAGCACGCCCCGATTCCCATCAAAGAGAATTTAGACGAAGCATCTGCCAAGACCAATGTCCTCCTTCAAGCCTACATTTCTCAGTTGAAATTGGAAGGATTCGCTCTTCAAGCTGATATGGTCTTCGTTGCTCAATCAGCTGGACGTCTGTTCCGTGCTCTATTCGAGATTGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>267 156 109 87 78 61 57 50 45 36 27 10 7 6 4</canonical_bands>
                <polymorphic_bands>267 156 109 87 78 61 61 50 45 36 27 10 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTAAAAATAGCTTTTCGATGTA</pcr_primer_p1>
		<pcr_primer_p2>GCATGGATTCATAGGTACAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>CCTAAAAATAGCTTTTCGATGTAATTTTTAATTTTGATGTGAATCTACGTGCTTTTCTGCACAAAATGAAGCGAACACCATATCTAAATTAATTTTTTCTAATCATAGTTTTTTTCCAGCGCGCCGATCCACTTCTCGAACAACGTCGTGCCGATCTGATCCACACCGCGTGCGTCCTCCTCGACAAGGCCGGTCTCATCAAATACGACAAACGATCCGGAATCATCCAGGCGACAGAACTCGGACGCATCGCTTCCCACTTCTACTGTACCTATGAATCCATGC</canonical_amplicon>
		<polymorphic_amplicon>CCTAAAAATAGCTTTTCGATGTAATTTTTAATTTTGATGTGAATCTACGTGCTTTTCTGCACAAAATGAAGCGAACACCATATCTAARTTAATTTTTTCTAATCATAGTTTTTTTCCAGCGCGCCGATCCACTTCTCGAACAACGTCGTGCCGATCTGATCCACACCGCGTGCGTCCTCCTCGACAAGGCCGGTCTCATCAAATACGACAAACGATCCGGAATCATCCAGGCGACAGAACTCGGACGCATCGCTTCCCACTTCTACTGTACCTATGAATCCATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34151</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>6831</contig_pos>
        <strand>+</strand>
        <context>GGTCTCATCA[A/T]ATACGACAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGATCTGATCCACACCGCGTGCGTCCTCCTCGACAAGGCCGGTCTCATCA</left_flank>
        <right_flank>ATACGACAAACGATCCGGAATCATCCAGGCGACAGAACTCGGACGCATCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACCGAAATATGGGTTTTTAAAACGTTTCGAGGTATTTTGAGCATAAAAATGACGATATTTGAAGTTTTGATGACAATAAAGGTTCAAAAAGGTCCGAAAAATCATTTTCTAAGCTTTTAAAGCTCGATTTTTAATTTTGCCGGTGGATTGGAACCTGAGACCCTTTGGCTCCAAAACTTCGGCCGAAAATCCCACTTTGCCATCAGAGCAAATTTTGACAAATCTAGTTTTTAGACCGGAATATGGGTTTTTAGGGGATTTGAAGGTGTTTTGAGCATAAAAATGACGATTTTTGTGCCTAAAAATAGCTTTTCGATGTAATTTTTAATTTTGATGTGAATCTACGTGCTTTTCTGCACAAAATGAAGCGAACACCATATCTAAATTAATTTTTTCTAATCATAGTTTTTTTCCAGCGCGCCGATCCACTTCTCGAACAACGTCGTGCCGATCTGATCCACACCGCGTGCGTCCTCCTCGACAAGGCCGGTCTCATCAAATACGACAAACGATCCGGAATCATCCAGGCGACAGAACTCGGACGCATCGCTTCCCACTTCTACTGTACCTATGAATCCATGCAAACCTACAACAAGCTGCTCATCGAGACGTGCTCCGATATCGATCTCTTCCGAATCTTCTCAATGAGCTCTGAATTCAAATTGCTCTCCGTTAGAGATGAAGAGAAATTGGAGCTTCAGAAGCTCGCCGAGCACGCCCCGATTCCCATCAAAGAGAATTTAGACGAAGCATCTGCCAAGACCAATGTCCTCCTTCAAGCCTACATTTCTCAGTTGAAATTGGAAGGATTCGCTCTTCAAGCTGATATGGTCTTCGTTGCTCAATCAGCTGGACGTCTGTTCCGTGCTCTATTCGAGATTGTTCTCTGGAGAGGATGGGCGGGGCTTGCTCAGAAGGTGCTCACGCTGTGTAAGATGGTTACACAGAGACAATGGGGATCGTTGAACCCGCTCCATCAGTTTAAGAAGATTCCTAGTG</canonical>
            <polymorphic>GACCGAAATATGGGTTTTTAAAACGTTTCGAGGTATTTTGAGCATAAAAATGACGATATTTGAAGTTTTGATGACAATAAAGGTTCAAAAAGGTCCGAAAAATCATTTTCTAAGCTTTTAAAGCTCGATTTTTAATTTTGCCGGTGGATTGGAACCTGAGACCCTTTGGCTCCAAAACTTCGGCCGAAAATCCCACTTTGCCATCAGAGCAAATTTTGACAAATCTAGTTTTTAGACCGGAATATGGGTTTTTAGGGGATTTGAAGGTGTTTTGAGCATAAAAATGACGATTTTTGTGCCTAAAAATAGCTTTTCGATGTAATTTTTAATTTTGATGTGAATCTACGTGCTTTTCTGCACAAAATGAAGCGAACACCATATCTAAATTAATTTTTTCTAATCATAGTTTTTTTCCAGCGCGCCGATCCACTTCTCGAACAACGTCGTGCCGATCTGATCCACACCGCGTGCGTCCTCCTCGACAAGGCCGGTCTCATCAWATACGACAAACGATCCGGAATCATCCAGGCGACAGAACTCGGACGCATCGCTTCCCACTTCTACTGTACCTATGAATCCATGCAAACCTACAACAAGCTGCTCATCGAGACGTGCTCCGATATCGATCTCTTCCGAATCTTCTCAATGAGCTCTGAATTCAAATTGCTCTCCGTTAGAGATGAAGAGAAATTGGAGCTTCAGAAGCTCGCCGAGCACGCCCCGATTCCCATCAAAGAGAATTTAGACGAAGCATCTGCCAAGACCAATGTCCTCCTTCAAGCCTACATTTCTCAGTTGAAATTGGAAGGATTCGCTCTTCAAGCTGATATGGTCTTCGTTGCTCAATCAGCTGGACGTCTGTTCCGTGCTCTATTCGAGATTGTTCTCTGGAGAGGATGGGCGGGGCTTGCTCAGAAGGTGCTCACGCTGTGTAAGATGGTTACACAGAGACAATGGGGATCGTTGAACCCGCTCCATCAGTTTAAGAAGATTCCTAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTAAAAATAGCTTTTCGATGTA</pcr_primer_p1>
		<pcr_primer_p2>GCATGGATTCATAGGTACAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>CCTAAAAATAGCTTTTCGATGTAATTTTTAATTTTGATGTGAATCTACGTGCTTTTCTGCACAAAATGAAGCGAACACCATATCTAAATTAATTTTTTCTAATCATAGTTTTTTTCCAGCGCGCCGATCCACTTCTCGAACAACGTCGTGCCGATCTGATCCACACCGCGTGCGTCCTCCTCGACAAGGCCGGTCTCATCAAATACGACAAACGATCCGGAATCATCCAGGCGACAGAACTCGGACGCATCGCTTCCCACTTCTACTGTACCTATGAATCCATGC</canonical_amplicon>
		<polymorphic_amplicon>CCTAAAAATAGCTTTTCGATGTAATTTTTAATTTTGATGTGAATCTACGTGCTTTTCTGCACAAAATGAAGCGAACACCATATCTAAATTAATTTTTTCTAATCATAGTTTTTTTCCAGCGCGCCGATCCACTTCTCGAACAACGTCGTGCCGATCTGATCCACACCGCGTGCGTCCTCCTCGACAAGGCCGGTCTCATCAWATACGACAAACGATCCGGAATCATCCAGGCGACAGAACTCGGACGCATCGCTTCCCACTTCTACTGTACCTATGAATCCATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34152</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>7874</contig_pos>
        <strand>+</strand>
        <context>AGAGTTCCAG[A/G]CAGTGTTCGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGACTTGCAGCCACTGCCGATTTCTGCGGTATCCAACAAAGAGTTCCAG</left_flank>
        <right_flank>CAGTGTTCGCTGAGAGTGGATTCAAGGTGTTCAATCCGATTCAGACACAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTGTATGACCTGGATCAACATCAATTGGGAGATCTTATCAAGATGCCAAAGATGGGAAAACCATTGTACAAGTTTATCCGGCAATTCCCAAAACTTGAAATGACCACGCTGATCCAGCCAATCACAAGAACTACAATGAGAATCGAGTTGACTATCACTCCGGACTTCCAATGGGATGATAAGGTTCATGGGAATGCAGAAGGCTTCTGGATCTTCATCGAAGACACCGACGGCGAGAAAATCCTCCATCACGAGTTCTTCCTGCTCAAACAGAAGTTCTGTACCGATGAGCATGTTGTCAAGATGATTGTCCCGATGTTCGACCCAATGCCACCACTCTACTACGTTCGAATCGTTTCCGATCGATGGATTGGCGCGGAGACGGTGCTTCCGATCTCGTTCCGTCATCTGATTCTTCCCGAGAAGTATCCACCACCAACTGAGCTTCTCGACTTGCAGCCACTGCCGATTTCTGCGGTATCCAACAAAGAGTTCCAGGCAGTGTTCGCTGAGAGTGGATTCAAGGTGTTCAATCCGATTCAGACACAGGTAAGGTAGTTTTTTATAATAAGAAGTACGGTAGCTTTGGAAAATGAGGATTACAGTAGTTTTTTTAGAAGTTTAGGATTCCGGATCCATTAGTTCATGACCTAAAAATCTAGAAAATTGGACCGCCACCTTGAAAATCGATAAAGTCAGGTCGTGACCTAGAAACCCCAAGAAAAATGAGGCCGTGACCTGGAAAATCGAGAAAGTTGGGTCATGTCCTAGGAAAAAAGTAGGTCATGATCTAGAAAAATTGGGCCGTGACCTGGAAAATCAAAAAAATTAAGCCACGACCTAAATAATTAAAAAATTAGGGCATGACCTAGAAAATTTGAAAAATTAGACCGTGACCTGGCAAATTTTGGCTGAAAATATGCTTGAAGTTTCTTAAAATAGGCAGAAAATAGGTCAAAATGACTTAAACTAGGTCAAAAATGAATTTAAATAAATTAA</canonical>
            <polymorphic>GCTGTATGACCTGGATCAACATCAATTGGGAGATCTTATCAAGATGCCAAAGATGGGAAAACCATTGTACAAGTTTATCCGGCAATTCCCAAAACTTGAAATGACCACGCTGATCCAGCCAATCACAAGAACTACAATGAGAATCGAGTTGACTATCACTCCGGACTTCCAATGGGATGATAAGGTTCATGGGAATGCAGAAGGCTTCTGGATCTTCATCGAAGACACCGACGGCGAGAAAATCCTCCATCACGAGTTCTTCCTGCTCAAACAGAAGTTCTGTACCGATGAGCATGTTGTCAAGATGATTGTCCCGATGTTCGACCCAATGCCACCACTCTACTACGTTCGAATCGTTTCCGATCGATGGATTGGCGCGGAGACGGTGCTTCCGATCTCGTTCCGTCATCTGATTCTTCCCGAGAAGTATCCACCACCAACTGAGCTTCTCGACTTGCAGCCACTGCCGATTTCTGCGGTATCCAACAAAGAGTTCCAGRCAGTGTTCGCTGAGAGTGGATTCAAGGTGTTCAATCCGATTCAGACACAGGTAAGGTAGTTTTTTATAATAAGAAGTACGGTAGCTTTGGAAAATGAGGATTACAGTAGTTTTTTTAGAAGTTTAGGATTCCGGATCCATTAGTTCATGACCTAAAAATCTAGAAAATTGGACCGCCACCTTGAAAATCGATAAAGTCAGGTCGTGACCTAGAAACCCCAAGAAAAATGAGGCCGTGACCTGGAAAATCGAGAAAGTTGGGTCATGTCCTAGGAAAAAAGTAGGTCATGATCTAGAAAAATTGGGCCGTGACCTGGAAAATCAAAAAAATTAAGCCACGACCTAAATAATTAAAAAATTAGGGCATGACCTAGAAAATTTGAAAAATTAGACCGTGACCTGGCAAATTTTGGCTGAAAATATGCTTGAAGTTTCTTAAAATAGGCAGAAAATAGGTCAAAATGACTTAAACTAGGTCAAAAATGAATTTAAATAAATTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>486 243 101 86 73 11</canonical_bands>
                <polymorphic_bands>729 101 86 73 11</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>486 243 101 86 73 11</canonical_bands>
                <polymorphic_bands>729 101 86 73 11</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>494 348 115 43</canonical_bands>
                <polymorphic_bands>537 348 115</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGCCACCACTCTACTACG</pcr_primer_p1>
		<pcr_primer_p2>AAAACTACCTTACCTGTGTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>AATGCCACCACTCTACTACGTTCGAATCGTTTCCGATCGATGGATTGGCGCGGAGACGGTGCTTCCGATCTCGTTCCGTCATCTGATTCTTCCCGAGAAGTATCCACCACCAACTGAGCTTCTCGACTTGCAGCCACTGCCGATTTCTGCGGTATCCAACAAAGAGTTCCAGGCAGTGTTCGCTGAGAGTGGATTCAAGGTGTTCAATCCGATTCAGACACAGGTAAGGTAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>AATGCCACCACTCTACTACGTTCGAATCGTTTCCGATCGATGGATTGGCGCGGAGACGGTGCTTCCGATCTCGTTCCGTCATCTGATTCTTCCCGAGAAGTATCCACCACCAACTGAGCTTCTCGACTTGCAGCCACTGCCGATTTCTGCGGTATCCAACAAAGAGTTCCAGRCAGTGTTCGCTGAGAGTGGATTCAAGGTGTTCAATCCGATTCAGACACAGGTAAGGTAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34153</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>8199</contig_pos>
        <strand></strand>
        <context>ggaaaatcaa[A/G]aaaattaagc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAGTAGGTCATGATCTAGAAAAATTGGGCCGTGACCTGGAAAATCAA</left_flank>
        <right_flank>AAAATTAAGCCACGACCTAAATAATTAAAAAATTAGGGCATGACCTAGAA</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAATGCCACCACTCTACTACGTTCGAATCGTTTCCGATCGATGGATTGGCGCGGAGACGGTGCTTCCGATCTCGTTCCGTCATCTGATTCTTCCCGAGAAGTATCCACCACCAACTGAGCTTCTCGACTTGCAGCCACTGCCGATTTCTGCGGTATCCAACAAAGAGTTCCAGGCAGTGTTCGCTGAGAGTGGATTCAAGGTGTTCAATCCGATTCAGACACAGGTAAGGTAGTTTTTTATAATAAGAAGTACGGTAGCTTTGGAAAATGAGGATTACAGTAGTTTTTTTAGAAGTTTAGGATTCCGGATCCATTAGTTCATGACCTAAAAATCTAGAAAATTGGACCGCCACCTTGAAAATCGATAAAGTCAGGTCGTGACCTAGAAACCCCAAGAAAAATGAGGCCGTGACCTGGAAAATCGAGAAAGTTGGGTCATGTCCTAGGAAAAAAGTAGGTCATGATCTAGAAAAATTGGGCCGTGACCTGGAAAATCAAAAAAATTAAGCCACGACCTAAATAATTAAAAAATTAGGGCATGACCTAGAAAATTTGAAAAATTAGACCGTGACCTGGCAAATTTTGGCTGAAAATATGCTTGAAGTTTCTTAAAATAGGCAGAAAATAGGTCAAAATGACTTAAACTAGGTCAAAAATGAATTTAAATAAATTAAAATGACTCTAAATTTGCAAAAAATGGCTTAAAATATGCCACAAATGACTCTAAATAGGCCTAAATTGACTCTAAATTTGCAAAAAATGGCTTAAAATATGCCAATAATGGCTCTAAATAATTCAAAAATGACTTTAAACAGACCAAAATTGACGATTTGCAAAAAATGGCTTAAAATGGGCCAAAAAGTGGCCTAGAAAAATTAGGCCCCGACCTTGTTCTCTTCAAAATCTTATTTTTTCAGGTCTTCCGTACAGTCTTCGAATCCAACGAGAACGTGATCGTCTGCGCTCCAAATGGCTCTGGAAAAACGGCAATCGCCGAGC</canonical>
            <polymorphic>CCAATGCCACCACTCTACTACGTTCGAATCGTTTCCGATCGATGGATTGGCGCGGAGACGGTGCTTCCGATCTCGTTCCGTCATCTGATTCTTCCCGAGAAGTATCCACCACCAACTGAGCTTCTCGACTTGCAGCCACTGCCGATTTCTGCGGTATCCAACAAAGAGTTCCAGGCAGTGTTCGCTGAGAGTGGATTCAAGGTGTTCAATCCGATTCAGACACAGGTAAGGTAGTTTTTTATAATAAGAAGTACGGTAGCTTTGGAAAATGAGGATTACAGTAGTTTTTTTAGAAGTTTAGGATTCCGGATCCATTAGTTCATGACCTAAAAATCTAGAAAATTGGACCGCCACCTTGAAAATCGATAAAGTCAGGTCGTGACCTAGAAACCCCAAGAAAAATGAGGCCGTGACCTGGAAAATCGAGAAAGTTGGGTCATGTCCTAGGAAAAAAGTAGGTCATGATCTAGAAAAATTGGGCCGTGACCTGGAAAATCAARAAAATTAAGCCACGACCTAAATAATTAAAAAATTAGGGCATGACCTAGAAAATTTGAAAAATTAGACCGTGACCTGGCAAATTTTGGCTGAAAATATGCTTGAAGTTTCTTAAAATAGGCAGAAAATAGGTCAAAATGACTTAAACTAGGTCAAAAATGAATTTAAATAAATTAAAATGACTCTAAATTTGCAAAAAATGGCTTAAAATATGCCACAAATGACTCTAAATAGGCCTAAATTGACTCTAAATTTGCAAAAAATGGCTTAAAATATGCCAATAATGGCTCTAAATAATTCAAAAATGACTTTAAACAGACCAAAATTGACGATTTGCAAAAAATGGCTTAAAATGGGCCAAAAAGTGGCCTAGAAAAATTAGGCCCCGACCTTGTTCTCTTCAAAATCTTATTTTTTCAGGTCTTCCGTACAGTCTTCGAATCCAACGAGAACGTGATCGTCTGCGCTCCAAATGGCTCTGGAAAAACGGCAATCGCCGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGAAAATGAGGATTACAGTAG</pcr_primer_p1>
		<pcr_primer_p2>AAGATTTTGAAGAGAACAAGGTC</pcr_primer_p2>
		<pcr_amplicon_size>647</pcr_amplicon_size>
		<canonical_amplicon>TTGGAAAATGAGGATTACAGTAGTTTTTTTAGAAGTTTAGGATTCCGGATCCATTAGTTCATGACCTAAAAATCTAGAAAATTGGACCGCCACCTTGAAAATCGATAAAGTCAGGTCGTGACCTAGAAACCCCAAGAAAAATGAGGCCGTGACCTGGAAAATCGAGAAAGTTGGGTCATGTCCTAGGAAAAAAGTAGGTCATGATCTAGAAAAATTGGGCCGTGACCTGGAAAATCAAAAAAATTAAGCCACGACCTAAATAATTAAAAAATTAGGGCATGACCTAGAAAATTTGAAAAATTAGACCGTGACCTGGCAAATTTTGGCTGAAAATATGCTTGAAGTTTCTTAAAATAGGCAGAAAATAGGTCAAAATGACTTAAACTAGGTCAAAAATGAATTTAAATAAATTAAAATGACTCTAAATTTGCAAAAAATGGCTTAAAATATGCCACAAATGACTCTAAATAGGCCTAAATTGACTCTAAATTTGCAAAAAATGGCTTAAAATATGCCAATAATGGCTCTAAATAATTCAAAAATGACTTTAAACAGACCAAAATTGACGATTTGCAAAAAATGGCTTAAAATGGGCCAAAAAGTGGCCTAGAAAAATTAGGCCCCGACCTTGTTCTCTTCAAAATCTT</canonical_amplicon>
		<polymorphic_amplicon>TTGGAAAATGAGGATTACAGTAGTTTTTTTAGAAGTTTAGGATTCCGGATCCATTAGTTCATGACCTAAAAATCTAGAAAATTGGACCGCCACCTTGAAAATCGATAAAGTCAGGTCGTGACCTAGAAACCCCAAGAAAAATGAGGCCGTGACCTGGAAAATCGAGAAAGTTGGGTCATGTCCTAGGAAAAAAGTAGGTCATGATCTAGAAAAATTGGGCCGTGACCTGGAAAATCAARAAAATTAAGCCACGACCTAAATAATTAAAAAATTAGGGCATGACCTAGAAAATTTGAAAAATTAGACCGTGACCTGGCAAATTTTGGCTGAAAATATGCTTGAAGTTTCTTAAAATAGGCAGAAAATAGGTCAAAATGACTTAAACTAGGTCAAAAATGAATTTAAATAAATTAAAATGACTCTAAATTTGCAAAAAATGGCTTAAAATATGCCACAAATGACTCTAAATAGGCCTAAATTGACTCTAAATTTGCAAAAAATGGCTTAAAATATGCCAATAATGGCTCTAAATAATTCAAAAATGACTTTAAACAGACCAAAATTGACGATTTGCAAAAAATGGCTTAAAATGGGCCAAAAAGTGGCCTAGAAAAATTAGGCCCCGACCTTGTTCTCTTCAAAATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34154</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>24256</contig_pos>
        <strand>+</strand>
        <context>CGTAAATCCA[C/T]ACTGGTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAACGACACTCCGAAATCCCGCTTGCGCGCGTTGTTTACCGTAAATCCA</left_flank>
        <right_flank>ACTGGTTTTGCAGCTGTCGCCCGAGCCAAATGCACTGAAATCATTCTTTC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTTTATTCGAGAAACAGCATTTTTAGTTCAAAAAATCGATAATTTGGTTCAGGAATCAGCACAGACGCAGTTGTTCTTCTCCTCCGAGCAAATCAGCGTTTTGTTGGGGCAGAACTGGAAAACTTTGGATTTTTTAGGGTCTAGAAGCTTCTGGAAGCTCACATTGTAGAAAAGTGTATTGCACATCCATTCCCAACAGTACCCGAATTCTTCTGATAGGCAAATAGAGAGAAAAAGTGCGAAAATTGAGAGGATTCTCATTTTTGGGCATAAAAATGCTTTTTGAGCGATGAAACTGTTGTTTAGAGCGAAAATACGTGTTTTTTCTCAACAAAATTTAGGCTTTCTTAAGTGTTGAGCTGGGAAAAGCACTAAAAATGACTTAAAATACCTGAAAATCACCTAAAAATTCCAAATTCAAAAAACCAAATTCAAACTACCGCCAACAACGACACTCCGAAATCCCGCTTGCGCGCGTTGTTTACCGTAAATCCATACTGGTTTTGCAGCTGTCGCCCGAGCCAAATGCACTGAAATCATTCTTTCTAGCTCATTTTTCTTGGATTTTGACCAAAAAATCAAGGAAACCAAATTTTCAGACACTTCGGGTCCCCGCAAAATGCTCAGTCGGCACATTTTTCAGTGTTCTAGGCTCGGCTTTGCTCCTTCAACGAGTCAAGCCGTTTTTCATACTTCCACAGTGAATTCTGTGCTTCCTAGGGTAAAAAATTGTGGTTTTGAAGGATAAAACGCTCTAATTTTTCAGGCAAAACCGCTAGACGAGGAAATGCCGGCGCCCGCTGCTTTGAAGACTTTGGAATCCAAAAAATCTCGCCCGGATTTTCAAATTTTGGATTTATCATCTGGAAAACGACATAAGAAGGATATTGATATCATCGGTATGATAAACATCTGTTTTTTAATGATTTTTAGGCCAAAAATTTAATTTCTTCCAGTCACCGATCAGTACCTCCAACAATGGTATAAAATGGAGAC</canonical>
            <polymorphic>AATTTTTTATTCGAGAAACAGCATTTTTAGTTCAAAAAATCGATAATTTGGTTCAGGAATCAGCACAGACGCAGTTGTTCTTCTCCTCCGAGCAAATCAGCGTTTTGTTGGGGCAGAACTGGAAAACTTTGGATTTTTTAGGGTCTAGAAGCTTCTGGAAGCTCACATTGTAGAAAAGTGTATTGCACATCCATTCCCAACAGTACCCGAATTCTTCTGATAGGCAAATAGAGAGAAAAAGTGCGAAAATTGAGAGGATTCTCATTTTTGGGCATAAAAATGCTTTTTGAGCGATGAAACTGTTGTTTAGAGCGAAAATACGTGTTTTTTCTCAACAAAATTTAGGCTTTCTTAAGTGTTGAGCTGGGAAAAGCACTAAAAATGACTTAAAATACCTGAAAATCACCTAAAAATTCCAAATTCAAAAAACCAAATTCAAACTACCGCCAACAACGACACTCCGAAATCCCGCTTGCGCGCGTTGTTTACCGTAAATCCAYACTGGTTTTGCAGCTGTCGCCCGAGCCAAATGCACTGAAATCATTCTTTCTAGCTCATTTTTCTTGGATTTTGACCAAAAAATCAAGGAAACCAAATTTTCAGACACTTCGGGTCCCCGCAAAATGCTCAGTCGGCACATTTTTCAGTGTTCTAGGCTCGGCTTTGCTCCTTCAACGAGTCAAGCCGTTTTTCATACTTCCACAGTGAATTCTGTGCTTCCTAGGGTAAAAAATTGTGGTTTTGAAGGATAAAACGCTCTAATTTTTCAGGCAAAACCGCTAGACGAGGAAATGCCGGCGCCCGCTGCTTTGAAGACTTTGGAATCCAAAAAATCTCGCCCGGATTTTCAAATTTTGGATTTATCATCTGGAAAACGACATAAGAAGGATATTGATATCATCGGTATGATAAACATCTGTTTTTTAATGATTTTTAGGCCAAAAATTTAATTTCTTCCAGTCACCGATCAGTACCTCCAACAATGGTATAAAATGGAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAACAAAATTTAGGCTTTCTTA</pcr_primer_p1>
		<pcr_primer_p2>GTCAAAATCCAAGAAAAATGAG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TCAACAAAATTTAGGCTTTCTTAAGTGTTGAGCTGGGAAAAGCACTAAAAATGACTTAAAATACCTGAAAATCACCTAAAAATTCCAAATTCAAAAAACCAAATTCAAACTACCGCCAACAACGACACTCCGAAATCCCGCTTGCGCGCGTTGTTTACCGTAAATCCATACTGGTTTTGCAGCTGTCGCCCGAGCCAAATGCACTGAAATCATTCTTTCTAGCTCATTTTTCTTGGATTTTGAC</canonical_amplicon>
		<polymorphic_amplicon>TCAACAAAATTTAGGCTTTCTTAAGTGTTGAGCTGGGAAAAGCACTAAAAATGACTTAAAATACCTGAAAATCACCTAAAAATTCCAAATTCAAAAAACCAAATTCAAACTACCGCCAACAACGACACTCCGAAATCCCGCTTGCGCGCGTTGTTTACCGTAAATCCAYACTGGTTTTGCAGCTGTCGCCCGAGCCAAATGCACTGAAATCATTCTTTCTAGCTCATTTTTCTTGGATTTTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34155</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>24694</contig_pos>
        <strand>+</strand>
        <context>TGATTTTTAG[A/G]CCAAAAATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATATTGATATCATCGGTATGATAAACATCTGTTTTTTAATGATTTTTAG</left_flank>
        <right_flank>CCAAAAATTTAATTTCTTCCAGTCACCGATCAGTACCTCCAACAATGGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTACCGCCAACAACGACACTCCGAAATCCCGCTTGCGCGCGTTGTTTACCGTAAATCCATACTGGTTTTGCAGCTGTCGCCCGAGCCAAATGCACTGAAATCATTCTTTCTAGCTCATTTTTCTTGGATTTTGACCAAAAAATCAAGGAAACCAAATTTTCAGACACTTCGGGTCCCCGCAAAATGCTCAGTCGGCACATTTTTCAGTGTTCTAGGCTCGGCTTTGCTCCTTCAACGAGTCAAGCCGTTTTTCATACTTCCACAGTGAATTCTGTGCTTCCTAGGGTAAAAAATTGTGGTTTTGAAGGATAAAACGCTCTAATTTTTCAGGCAAAACCGCTAGACGAGGAAATGCCGGCGCCCGCTGCTTTGAAGACTTTGGAATCCAAAAAATCTCGCCCGGATTTTCAAATTTTGGATTTATCATCTGGAAAACGACATAAGAAGGATATTGATATCATCGGTATGATAAACATCTGTTTTTTAATGATTTTTAGGCCAAAAATTTAATTTCTTCCAGTCACCGATCAGTACCTCCAACAATGGTATAAAATGGAGACGAAAAGTCTAGCAGCCGATTATTTAGCGCTTTGCAAGTCGAAATTAAGCTTATTTGTTGCTTCAACAGGTAGTTCTTCGTCTTTTTTTCGTTTAAATAGACAGAAAATCTATTTCGAATTTTTGCATTTTTCAGCGACCTGCGGCTTCCTGATGGCTCCAGTACCCGTGGCAGCGGCTCCACTAGCTGCAGCGACGATTGGTGAGCTAAAAACGGCGAGGAAACTGATAAGCTCAAAATTTCAGGCACATTTCTCCTCTCATCGGCTGCCAACTCGTGTAATCAGCTTCTGGAGGCACCGTACGACGCCCAGATGAGAAGAACGCAGAGTAGAGTGCTTGTCGTGCATCGGTTGGTCTTAAGAAGCTAGAAAACCGGGTTTCGAGCTTGAAATTCGCTATTTTAAGCCAATGCTAGGTCTAAAATCGCTATTTTAATC</canonical>
            <polymorphic>AACTACCGCCAACAACGACACTCCGAAATCCCGCTTGCGCGCGTTGTTTACCGTAAATCCATACTGGTTTTGCAGCTGTCGCCCGAGCCAAATGCACTGAAATCATTCTTTCTAGCTCATTTTTCTTGGATTTTGACCAAAAAATCAAGGAAACCAAATTTTCAGACACTTCGGGTCCCCGCAAAATGCTCAGTCGGCACATTTTTCAGTGTTCTAGGCTCGGCTTTGCTCCTTCAACGAGTCAAGCCGTTTTTCATACTTCCACAGTGAATTCTGTGCTTCCTAGGGTAAAAAATTGTGGTTTTGAAGGATAAAACGCTCTAATTTTTCAGGCAAAACCGCTAGACGAGGAAATGCCGGCGCCCGCTGCTTTGAAGACTTTGGAATCCAAAAAATCTCGCCCGGATTTTCAAATTTTGGATTTATCATCTGGAAAACGACATAAGAAGGATATTGATATCATCGGTATGATAAACATCTGTTTTTTAATGATTTTTAGRCCAAAAATTTAATTTCTTCCAGTCACCGATCAGTACCTCCAACAATGGTATAAAATGGAGACGAAAAGTCTAGCAGCCGATTATTTAGCGCTTTGCAAGTCGAAATTAAGCTTATTTGTTGCTTCAACAGGTAGTTCTTCGTCTTTTTTTCGTTTAAATAGACAGAAAATCTATTTCGAATTTTTGCATTTTTCAGCGACCTGCGGCTTCCTGATGGCTCCAGTACCCGTGGCAGCGGCTCCACTAGCTGCAGCGACGATTGGTGAGCTAAAAACGGCGAGGAAACTGATAAGCTCAAAATTTCAGGCACATTTCTCCTCTCATCGGCTGCCAACTCGTGTAATCAGCTTCTGGAGGCACCGTACGACGCCCAGATGAGAAGAACGCAGAGTAGAGTGCTTGTCGTGCATCGGTTGGTCTTAAGAAGCTAGAAAACCGGGTTTCGAGCTTGAAATTCGCTATTTTAAGCCAATGCTAGGTCTAAAATCGCTATTTTAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>254 103 96 80 76 75 34 34 32 28 26 23 21 21 20 20 20 12 11 9 5</canonical_bands>
                <polymorphic_bands>330 103 96 80 75 34 34 32 28 26 23 21 21 20 20 20 12 11 9 5</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGGATAAAACGCTCTAATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTATACCATTGTTGGAGGTACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAGGATAAAACGCTCTAATTTTTCAGGCAAAACCGCTAGACGAGGAAATGCCGGCGCCCGCTGCTTTGAAGACTTTGGAATCCAAAAAATCTCGCCCGGATTTTCAAATTTTGGATTTATCATCTGGAAAACGACATAAGAAGGATATTGATATCATCGGTATGATAAACATCTGTTTTTTAATGATTTTTAGGCCAAAAATTTAATTTCTTCCAGTCACCGATCAGTACCTCCAACAATGGTATAAA</canonical_amplicon>
		<polymorphic_amplicon>GAAGGATAAAACGCTCTAATTTTTCAGGCAAAACCGCTAGACGAGGAAATGCCGGCGCCCGCTGCTTTGAAGACTTTGGAATCCAAAAAATCTCGCCCGGATTTTCAAATTTTGGATTTATCATCTGGAAAACGACATAAGAAGGATATTGATATCATCGGTATGATAAACATCTGTTTTTTAATGATTTTTAGRCCAAAAATTTAATTTCTTCCAGTCACCGATCAGTACCTCCAACAATGGTATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34167</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>153932</contig_pos>
        <strand></strand>
        <context>tctggtaaaa[T/A]ttttcaaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ACAAAAATAAGCTTTTAATTTTGAACCTATTTATTTCAGTTCTGGTAAAA</left_flank>
        <right_flank>TTTTCAAAAATCTGTCAATTGATAAAATGTTATTGATATTATGATAAACA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCAACAAACATTTTGTTAGTTGTCAACTTTTTGATAGCTATCATAGAAACTGAGATAATAGAGGTCAAACCGCGTGAAATTCAAAATTTAAAATTTCTTGGCTTCCTGAAAGCTTGTATACCGTAACATAACCCATTTGGATTTCAAAGACGTTATCTACAAGCTAATCCTCTGAATAAGGTAAAAAGAGACACTAGATCTCGACACTGATACAATTCGTGTCGTCGGGGCTATTTGAAAAGCGTGTCTGTATCTGTATTTTAATCTGAAAAGAGAGGAATTTTTGTTTCTGAATGTTTGATCGATACATCAGTTCCAACGCATAGGTCAGAAGTGAAGGCATTTTTGGTCACTTAAAAGGCCAAGGAATGGACACAATGCCTTTAGCAAACCTAAGACATTTATTATGCTAATTGAAGTTCTACTATCGTAAAACCTGTGACCCAACACAAAAATAAGCTTTTAATTTTGAACCTATTTATTTCAGTTCTGGTAAAATTTTTCAAAAATCTGTCAATTGATAAAATGTTATTGATATTATGATAAACATTTTGTCAGTTGACCACTTTTTAATATCTTCCACAGGAAGCGAGATAAATTGGATCAAAGTTCTGGCGACTTCTCTACATGCAACCGATTTTCAAGGCCGTGTCAGCGTCAACTTTAAGCTCATATATCTCGGCTCCTATTGAAGCTATCAAATAATAGTTAACTAATAAAATATTTGTGATAATATGATACACATTTTATTTGTTGGCAGATTTTTCATATCTGTCATAGAAAACGAAATATATAGCCTCAAAGGTATTAGTCTGTCGGCTCTTCAACAATCGTCTTTTAACGCGGGGTCACCCTCAACTTTGGGCCAATTTATCTCAGTTCCTGTGAAAGTTTTCAAAAATTTGTCAATTGATAAAATGTTATTGGTATTATGATAAACATTTTTTTAGTTGAGCACTTTTTGATATCTTCTACAGGAAGCGAGATAAATTGAATCAA</canonical>
            <polymorphic>GCCAACAAACATTTTGTTAGTTGTCAACTTTTTGATAGCTATCATAGAAACTGAGATAATAGAGGTCAAACCGCGTGAAATTCAAAATTTAAAATTTCTTGGCTTCCTGAAAGCTTGTATACCGTAACATAACCCATTTGGATTTCAAAGACGTTATCTACAAGCTAATCCTCTGAATAAGGTAAAAAGAGACACTAGATCTCGACACTGATACAATTCGTGTCGTCGGGGCTATTTGAAAAGCGTGTCTGTATCTGTATTTTAATCTGAAAAGAGAGGAATTTTTGTTTCTGAATGTTTGATCGATACATCAGTTCCAACGCATAGGTCAGAAGTGAAGGCATTTTTGGTCACTTAAAAGGCCAAGGAATGGACACAATGCCTTTAGCAAACCTAAGACATTTATTATGCTAATTGAAGTTCTACTATCGTAAAACCTGTGACCCAACACAAAAATAAGCTTTTAATTTTGAACCTATTTATTTCAGTTCTGGTAAAAWTTTTCAAAAATCTGTCAATTGATAAAATGTTATTGATATTATGATAAACATTTTGTCAGTTGACCACTTTTTAATATCTTCCACAGGAAGCGAGATAAATTGGATCAAAGTTCTGGCGACTTCTCTACATGCAACCGATTTTCAAGGCCGTGTCAGCGTCAACTTTAAGCTCATATATCTCGGCTCCTATTGAAGCTATCAAATAATAGTTAACTAATAAAATATTTGTGATAATATGATACACATTTTATTTGTTGGCAGATTTTTCATATCTGTCATAGAAAACGAAATATATAGCCTCAAAGGTATTAGTCTGTCGGCTCTTCAACAATCGTCTTTTAACGCGGGGTCACCCTCAACTTTGGGCCAATTTATCTCAGTTCCTGTGAAAGTTTTCAAAAATTTGTCAATTGATAAAATGTTATTGGTATTATGATAAACATTTTTTTAGTTGAGCACTTTTTGATATCTTCTACAGGAAGCGAGATAAATTGAATCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>403 218 187 100 78 7 7</canonical_bands>
                <polymorphic_bands>621 187 100 78 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>271 133 122 81 81 78 65 53 32 32 19 11 8 7 7</canonical_bands>
                <polymorphic_bands>271 133 122 81 81 78 65 53 51 32 11 8 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTTAGCAAACCTAAGACATTT</pcr_primer_p1>
		<pcr_primer_p2>CGGTTGCATGTAGAGAAGTC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CCTTTAGCAAACCTAAGACATTTATTATGCTAATTGAAGTTCTACTATCGTAAAACCTGTGACCCAACACAAAAATAAGCTTTTAATTTTGAACCTATTTATTTCAGTTCTGGTAAAATTTTTCAAAAATCTGTCAATTGATAAAATGTTATTGATATTATGATAAACATTTTGTCAGTTGACCACTTTTTAATATCTTCCACAGGAAGCGAGATAAATTGGATCAAAGTTCTGGCGACTTCTCTACATGCAACCG</canonical_amplicon>
		<polymorphic_amplicon>CCTTTAGCAAACCTAAGACATTTATTATGCTAATTGAAGTTCTACTATCGTAAAACCTGTGACCCAACACAAAAATAAGCTTTTAATTTTGAACCTATTTATTTCAGTTCTGGTAAAAWTTTTCAAAAATCTGTCAATTGATAAAATGTTATTGATATTATGATAAACATTTTGTCAGTTGACCACTTTTTAATATCTTCCACAGGAAGCGAGATAAATTGGATCAAAGTTCTGGCGACTTCTCTACATGCAACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34168</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>171446</contig_pos>
        <strand>+</strand>
        <context>AAAGGAAATA[A/G]TAGTTTTAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCGATCTCTTGAATTTTATGACATAAACTATTTTACAAAAGGAAATA</left_flank>
        <right_flank>TAGTTTTAAAAGTTTAGAAAATTTTATAAAAATCTAAAAATCATTTAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTTTTATTACAATCTTTGTTTCATGAAGGTCTACAGATCACAAAAGGAAGAGATAGTGTCCACCCTCTGAAGCCCCGCCCACTTTGAAGGCAAAGGAGCCTAGCTAGAGTATAAGAAGACCGTCTAAACCGTATCCAAACCATCAACCTATCAGGTTTTGAGATTCCAAGATTCCAAAAATGTTCAAGAACATCTTCTCCCTTTCCTTCCTCGCCCTCTTCGCCCTATTCTTGTCTTCTACCGTATCTGCTGGCCTCATCAACCGAGTCAAACGTCAAAACTACTGGGGACAGCCTGGCGTCGTCAACAACATGGCCTCGGATCCATTAGTCGGAGGATCCACGTCACTCGGATGGGCTCAAGTTCCACATGTCTACAGTCCAATGTTCTCGCCAGTGTTTGGTAGAAAATAATCGGATTTTTTAAATAATTGCTCATCTCTATTTTTTTTCGATCTCTTGAATTTTATGACATAAACTATTTTACAAAAGGAAATAGTAGTTTTAAAAGTTTAGAAAATTTTATAAAAATCTAAAAATCATTTAAAAATGGGCCACAATGGTCAAACCCGAATCTATTCACTTTGTTCAAAATTATCACGGTTCCTGTAAGAGCTATTGAATAACTTTTAACTAATAAAATAATTTTGATAACATGATAAACATTTCATCAGTTGACCACTTTTTGAAATCTCGCACATGAAGTGAGACAATTAAGCTCAAAGCACACACATAGGGTCTATTCAAGCAAATACGGTAGAAGGGAACCCAGAAACTTTGATCTATTTTATCCCGTTTCCTATAAGAGATATCGAAAACCGCTTAACTAATTGTAAGAAATTATTCACCATAAAATCACCAAAATTTTATCAGTTGATCACTTTCCGATATCTCTTATAGGAAGCGAGGTAAATTGACTCGAAAAGAAAACGATACCACAGCCGGATGCGGTTACAGCTGAGCCGCTCGTGGGCCGCTTCTAAAAATCTTGCAAAAGTG</canonical>
            <polymorphic>CACTTTTATTACAATCTTTGTTTCATGAAGGTCTACAGATCACAAAAGGAAGAGATAGTGTCCACCCTCTGAAGCCCCGCCCACTTTGAAGGCAAAGGAGCCTAGCTAGAGTATAAGAAGACCGTCTAAACCGTATCCAAACCATCAACCTATCAGGTTTTGAGATTCCAAGATTCCAAAAATGTTCAAGAACATCTTCTCCCTTTCCTTCCTCGCCCTCTTCGCCCTATTCTTGTCTTCTACCGTATCTGCTGGCCTCATCAACCGAGTCAAACGTCAAAACTACTGGGGACAGCCTGGCGTCGTCAACAACATGGCCTCGGATCCATTAGTCGGAGGATCCACGTCACTCGGATGGGCTCAAGTTCCACATGTCTACAGTCCAATGTTCTCGCCAGTGTTTGGTAGAAAATAATCGGATTTTTTAAATAATTGCTCATCTCTATTTTTTTTCGATCTCTTGAATTTTATGACATAAACTATTTTACAAAAGGAAATARTAGTTTTAAAAGTTTAGAAAATTTTATAAAAATCTAAAAATCATTTAAAAATGGGCCACAATGGTCAAACCCGAATCTATTCACTTTGTTCAAAATTATCACGGTTCCTGTAAGAGCTATTGAATAACTTTTAACTAATAAAATAATTTTGATAACATGATAAACATTTCATCAGTTGACCACTTTTTGAAATCTCGCACATGAAGTGAGACAATTAAGCTCAAAGCACACACATAGGGTCTATTCAAGCAAATACGGTAGAAGGGAACCCAGAAACTTTGATCTATTTTATCCCGTTTCCTATAAGAGATATCGAAAACCGCTTAACTAATTGTAAGAAATTATTCACCATAAAATCACCAAAATTTTATCAGTTGATCACTTTCCGATATCTCTTATAGGAAGCGAGGTAAATTGACTCGAAAAGAAAACGATACCACAGCCGGATGCGGTTACAGCTGAGCCGCTCGTGGGCCGCTTCTAAAAATCTTGCAAAAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAAGTTCCACATGTCTACAG</pcr_primer_p1>
		<pcr_primer_p2>GAATAGATTCGGGTTTGACC</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>CTCAAGTTCCACATGTCTACAGTCCAATGTTCTCGCCAGTGTTTGGTAGAAAATAATCGGATTTTTTAAATAATTGCTCATCTCTATTTTTTTTCGATCTCTTGAATTTTATGACATAAACTATTTTACAAAAGGAAATAGTAGTTTTAAAAGTTTAGAAAATTTTATAAAAATCTAAAAATCATTTAAAAATGGGCCACAATGGTCAAACCCGAATCTATTC</canonical_amplicon>
		<polymorphic_amplicon>CTCAAGTTCCACATGTCTACAGTCCAATGTTCTCGCCAGTGTTTGGTAGAAAATAATCGGATTTTTTAAATAATTGCTCATCTCTATTTTTTTTCGATCTCTTGAATTTTATGACATAAACTATTTTACAAAAGGAAATARTAGTTTTAAAAGTTTAGAAAATTTTATAAAAATCTAAAAATCATTTAAAAATGGGCCACAATGGTCAAACCCGAATCTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34169</snp_id>
        <super_contig>c008901156.Contig1</super_contig>
        <contig_pos>171500</contig_pos>
        <strand>+</strand>
        <context>tttaaaaatG[A/G]GCCACAATGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTAAAAGTTTAGAAAATTTTATAAAAATCTAAAAATCATTTAAAAATG</left_flank>
        <right_flank>GCCACAATGGTCAAACCCGAATCTATTCACTTTGTTCAAAATTATCACGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGTGTCCACCCTCTGAAGCCCCGCCCACTTTGAAGGCAAAGGAGCCTAGCTAGAGTATAAGAAGACCGTCTAAACCGTATCCAAACCATCAACCTATCAGGTTTTGAGATTCCAAGATTCCAAAAATGTTCAAGAACATCTTCTCCCTTTCCTTCCTCGCCCTCTTCGCCCTATTCTTGTCTTCTACCGTATCTGCTGGCCTCATCAACCGAGTCAAACGTCAAAACTACTGGGGACAGCCTGGCGTCGTCAACAACATGGCCTCGGATCCATTAGTCGGAGGATCCACGTCACTCGGATGGGCTCAAGTTCCACATGTCTACAGTCCAATGTTCTCGCCAGTGTTTGGTAGAAAATAATCGGATTTTTTAAATAATTGCTCATCTCTATTTTTTTTCGATCTCTTGAATTTTATGACATAAACTATTTTACAAAAGGAAATAGTAGTTTTAAAAGTTTAGAAAATTTTATAAAAATCTAAAAATCATTTAAAAATGGGCCACAATGGTCAAACCCGAATCTATTCACTTTGTTCAAAATTATCACGGTTCCTGTAAGAGCTATTGAATAACTTTTAACTAATAAAATAATTTTGATAACATGATAAACATTTCATCAGTTGACCACTTTTTGAAATCTCGCACATGAAGTGAGACAATTAAGCTCAAAGCACACACATAGGGTCTATTCAAGCAAATACGGTAGAAGGGAACCCAGAAACTTTGATCTATTTTATCCCGTTTCCTATAAGAGATATCGAAAACCGCTTAACTAATTGTAAGAAATTATTCACCATAAAATCACCAAAATTTTATCAGTTGATCACTTTCCGATATCTCTTATAGGAAGCGAGGTAAATTGACTCGAAAAGAAAACGATACCACAGCCGGATGCGGTTACAGCTGAGCCGCTCGTGGGCCGCTTCTAAAAATCTTGCAAAAGTGACTTTAACGTCCTGACTGGGCTGGCCAGACGCCAAGTCAGTCATGCTGTCTTGA</canonical>
            <polymorphic>ATAGTGTCCACCCTCTGAAGCCCCGCCCACTTTGAAGGCAAAGGAGCCTAGCTAGAGTATAAGAAGACCGTCTAAACCGTATCCAAACCATCAACCTATCAGGTTTTGAGATTCCAAGATTCCAAAAATGTTCAAGAACATCTTCTCCCTTTCCTTCCTCGCCCTCTTCGCCCTATTCTTGTCTTCTACCGTATCTGCTGGCCTCATCAACCGAGTCAAACGTCAAAACTACTGGGGACAGCCTGGCGTCGTCAACAACATGGCCTCGGATCCATTAGTCGGAGGATCCACGTCACTCGGATGGGCTCAAGTTCCACATGTCTACAGTCCAATGTTCTCGCCAGTGTTTGGTAGAAAATAATCGGATTTTTTAAATAATTGCTCATCTCTATTTTTTTTCGATCTCTTGAATTTTATGACATAAACTATTTTACAAAAGGAAATAGTAGTTTTAAAAGTTTAGAAAATTTTATAAAAATCTAAAAATCATTTAAAAATGRGCCACAATGGTCAAACCCGAATCTATTCACTTTGTTCAAAATTATCACGGTTCCTGTAAGAGCTATTGAATAACTTTTAACTAATAAAATAATTTTGATAACATGATAAACATTTCATCAGTTGACCACTTTTTGAAATCTCGCACATGAAGTGAGACAATTAAGCTCAAAGCACACACATAGGGTCTATTCAAGCAAATACGGTAGAAGGGAACCCAGAAACTTTGATCTATTTTATCCCGTTTCCTATAAGAGATATCGAAAACCGCTTAACTAATTGTAAGAAATTATTCACCATAAAATCACCAAAATTTTATCAGTTGATCACTTTCCGATATCTCTTATAGGAAGCGAGGTAAATTGACTCGAAAAGAAAACGATACCACAGCCGGATGCGGTTACAGCTGAGCCGCTCGTGGGCCGCTTCTAAAAATCTTGCAAAAGTGACTTTAACGTCCTGACTGGGCTGGCCAGACGCCAAGTCAGTCATGCTGTCTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>499 419 82</canonical_bands>
                <polymorphic_bands>918 82</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>419 238 201 62 50 30</canonical_bands>
                <polymorphic_bands>657 201 62 50 30</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>223 196 150 103 61 46 42 40 30 26 22 20 16 11 5 5 4</canonical_bands>
                <polymorphic_bands>257 223 150 103 46 42 40 30 26 22 20 16 11 5 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCGATCTCTTGAATTTTATGAC</pcr_primer_p1>
		<pcr_primer_p2>TTGAATAGACCCTATGTGTGTG</pcr_primer_p2>
		<pcr_amplicon_size>297</pcr_amplicon_size>
		<canonical_amplicon>TTCGATCTCTTGAATTTTATGACATAAACTATTTTACAAAAGGAAATAGTAGTTTTAAAAGTTTAGAAAATTTTATAAAAATCTAAAAATCATTTAAAAATGGGCCACAATGGTCAAACCCGAATCTATTCACTTTGTTCAAAATTATCACGGTTCCTGTAAGAGCTATTGAATAACTTTTAACTAATAAAATAATTTTGATAACATGATAAACATTTCATCAGTTGACCACTTTTTGAAATCTCGCACATGAAGTGAGACAATTAAGCTCAAAGCACACACATAGGGTCTATTCAA</canonical_amplicon>
		<polymorphic_amplicon>TTCGATCTCTTGAATTTTATGACATAAACTATTTTACAAAAGGAAATAGTAGTTTTAAAAGTTTAGAAAATTTTATAAAAATCTAAAAATCATTTAAAAATGRGCCACAATGGTCAAACCCGAATCTATTCACTTTGTTCAAAATTATCACGGTTCCTGTAAGAGCTATTGAATAACTTTTAACTAATAAAATAATTTTGATAACATGATAAACATTTCATCAGTTGACCACTTTTTGAAATCTCGCACATGAAGTGAGACAATTAAGCTCAAAGCACACACATAGGGTCTATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34170</snp_id>
        <super_contig>c008901283.Contig1</super_contig>
        <contig_pos>172</contig_pos>
        <strand>+</strand>
        <context>CTTTGATGAA[A/G]AACTCCTCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAGTCTTTGCTTTGGAAAGTCCCTTGAAATCTACATTTTCTTTGATGAA</left_flank>
        <right_flank>AACTCCTCACAGCAAATTTGTTTCTCGATTAACGGTGTGATTTTGAGACT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCATCATTGGGCAATTCTCAACACAATGGCTGCCATCACAATGGGTGCACTTCATTTCCATCTCGTATCCCCCGGAAAAGCATTCAGAAGTGAATTCAAAACGAAAATCTGTTTGTTTGAGAGTCTTTGCTTTGGAAAGTCCCTTGAAATCTACATTTTCTTTGATGAAGAACTCCTCACAGCAAATTTGTTTCTCGATTAACGGTGTGATTTTGAGACTTCCAAATGTTGACGATGGCTTTGGAACTGCTGGTGGTTCTTGTCGTGGGGATTCGTCGAAGGAAGAGTCTCTCTTGGTGGGAGCGTCTTTTTCCTTTTTCGGTGTGCTTTCTGGATCATTCTCCAAAGACTCCAGTTTCGGGACATCTTTTGCATTTTCAGTATCATTATCCAATGCTTTCAAAGGCTCATCTGACGTTTCCAGTTTTGGGACAGCTCCAGCCTCCTCAGGGGCATTCTCCGATGCTTTCAGAGAAGACTCTTCTGGTGTTTCCACAGCTTCTGGAATCGGACGGGCGATGACACAGTTGACGAAATGAACACGGGTGGTCTCAATTTCTTGAACTGGTTCCGGGAACTTTTCAGCCTCTTCACGAGCATTCTCCAACGCTTTCAAAGACTCATCTGGTGTTTCCACAGCGTCAGCTTGAATCTGTTGAGGCTGGGTAATGACACAATTGATGGAAAATACATTGGCAGTCTCTGGTTCCTGAACGTTTGGAGTCACTTTTGGGACCTCAGAAACTTGATTTTCAGCGTCAGATGGTATTTCCTGCAAATAATATGCTTTTTAACCCAATTTTTTGAATTTGGTGCCAAAATGCCGGTGTCCGAGTAAAAGGGAAAAAAGGCGTGCCTAAGAAAGCCTAAGAAAATGCTGAAACTGTTAAAATTCTCAAAAGTAGCGAAAATTGGACATTTTTCAAAAGAGGAACGATTTTTGACTGTAATAGTTTAAACAGGATTTTGGAAATTTAAATATTCAGAAGTTCAAAATA</canonical>
            <polymorphic>CTCCATCATTGGGCAATTCTCAACACAATGGCTGCCATCACAATGGGTGCACTTCATTTCCATCTCGTATCCCCCGGAAAAGCATTCAGAAGTGAATTCAAAACGAAAATCTGTTTGTTTGAGAGTCTTTGCTTTGGAAAGTCCCTTGAAATCTACATTTTCTTTGATGAARAACTCCTCACAGCAAATTTGTTTCTCGATTAACGGTGTGATTTTGAGACTTCCAAATGTTGACGATGGCTTTGGAACTGCTGGTGGTTCTTGTCGTGGGGATTCGTCGAAGGAAGAGTCTCTCTTGGTGGGAGCGTCTTTTTCCTTTTTCGGTGTGCTTTCTGGATCATTCTCCAAAGACTCCAGTTTCGGGACATCTTTTGCATTTTCAGTATCATTATCCAATGCTTTCAAAGGCTCATCTGACGTTTCCAGTTTTGGGACAGCTCCAGCCTCCTCAGGGGCATTCTCCGATGCTTTCAGAGAAGACTCTTCTGGTGTTTCCACAGCTTCTGGAATCGGACGGGCGATGACACAGTTGACGAAATGAACACGGGTGGTCTCAATTTCTTGAACTGGTTCCGGGAACTTTTCAGCCTCTTCACGAGCATTCTCCAACGCTTTCAAAGACTCATCTGGTGTTTCCACAGCGTCAGCTTGAATCTGTTGAGGCTGGGTAATGACACAATTGATGGAAAATACATTGGCAGTCTCTGGTTCCTGAACGTTTGGAGTCACTTTTGGGACCTCAGAAACTTGATTTTCAGCGTCAGATGGTATTTCCTGCAAATAATATGCTTTTTAACCCAATTTTTTGAATTTGGTGCCAAAATGCCGGTGTCCGAGTAAAAGGGAAAAAAGGCGTGCCTAAGAAAGCCTAAGAAAATGCTGAAACTGTTAAAATTCTCAAAAGTAGCGAAAATTGGACATTTTTCAAAAGAGGAACGATTTTTGACTGTAATAGTTTAAACAGGATTTTGGAAATTTAAATATTCAGAAGTTCAAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTGTTTGTTTGAGAGTCTTTG</pcr_primer_p1>
		<pcr_primer_p2>CTGGAGTCTTTGGAGAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCTGTTTGTTTGAGAGTCTTTGCTTTGGAAAGTCCCTTGAAATCTACATTTTCTTTGATGAARAACTCCTCACAGCAAATTTGTTTCTCGATTAACGGTGTGATTTTGAGACTTCCAAATGTTGACGATGGCTTTGGAACTGCTGGTGGTTCTTGTCGTGGGGATTCGTCGAAGGAAGAGTCTCTCTTGGTGGGAGCGTCTTTTTCCTTTTTCGGTGTGCTTTCTGGATCATTCTCCAAAGACTCCAGTTTCGGGACATCTTTTGCATTTTCAGTATCATTATCCAATGCTTTCAAAGGCTCATCTGACGTTTCCAGTTTTGGGACAGCTCCAGCCTCCTCAGGGGCATTCTCCGATGCTTTCAGAGAAGACTCTTCTGGTGTTTCCACAGCTTCTGGAATCGGACGGGCG</canonical_amplicon>
		<polymorphic_amplicon>ATCTGTTTGTTTGAGAGTCTTTGCTTTGGAAAGTCCCTTGAAATCTACATTTTCTTTGATGAARAACTCCTCACAGCAAATTTGTTTCTCGATTAACGGTGTGATTTTGAGACTTCCAAATGTTGACGATGGCTTTGGAACTGCTGGTGGTTCTTGTCGTGGGGATTCGTCGAAGGAAGAGTCTCTCTTGGTGGGAGCGTCTTTTTCCTTTTTCGGTGTGCTTTCTGGATCATTCTCCAAAGACTCCAGTTTCGGGACATCTTTTGCATTTTCAGTATCATTATCCAATGCTTTCAAAGGCTCATCTGACGTTTCCAGTTTTGGGACAGCTCCAGCCTCCTCAGGGGCATTCTCCGATGCTTTCAGAGAAGACTCTTCTGGTGTTTCCACAGCTTCTGGAATCGGACGGGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34171</snp_id>
        <super_contig>c008901283.Contig1</super_contig>
        <contig_pos>210</contig_pos>
        <strand>+</strand>
        <context>ATTAACGGTG[C/T]GATTTTGAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTTTGATGAAGAACTCCTCACAGCAAATTTGTTTCTCGATTAACGGTG</left_flank>
        <right_flank>GATTTTGAGACTTCCAAATGTTGACGATGGCTTTGGAACTGCTGGTGGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCATCATTGGGCAATTCTCAACACAATGGCTGCCATCACAATGGGTGCACTTCATTTCCATCTCGTATCCCCCGGAAAAGCATTCAGAAGTGAATTCAAAACGAAAATCTGTTTGTTTGAGAGTCTTTGCTTTGGAAAGTCCCTTGAAATCTACATTTTCTTTGATGAAGAACTCCTCACAGCAAATTTGTTTCTCGATTAACGGTGTGATTTTGAGACTTCCAAATGTTGACGATGGCTTTGGAACTGCTGGTGGTTCTTGTCGTGGGGATTCGTCGAAGGAAGAGTCTCTCTTGGTGGGAGCGTCTTTTTCCTTTTTCGGTGTGCTTTCTGGATCATTCTCCAAAGACTCCAGTTTCGGGACATCTTTTGCATTTTCAGTATCATTATCCAATGCTTTCAAAGGCTCATCTGACGTTTCCAGTTTTGGGACAGCTCCAGCCTCCTCAGGGGCATTCTCCGATGCTTTCAGAGAAGACTCTTCTGGTGTTTCCACAGCTTCTGGAATCGGACGGGCGATGACACAGTTGACGAAATGAACACGGGTGGTCTCAATTTCTTGAACTGGTTCCGGGAACTTTTCAGCCTCTTCACGAGCATTCTCCAACGCTTTCAAAGACTCATCTGGTGTTTCCACAGCGTCAGCTTGAATCTGTTGAGGCTGGGTAATGACACAATTGATGGAAAATACATTGGCAGTCTCTGGTTCCTGAACGTTTGGAGTCACTTTTGGGACCTCAGAAACTTGATTTTCAGCGTCAGATGGTATTTCCTGCAAATAATATGCTTTTTAACCCAATTTTTTGAATTTGGTGCCAAAATGCCGGTGTCCGAGTAAAAGGGAAAAAAGGCGTGCCTAAGAAAGCCTAAGAAAATGCTGAAACTGTTAAAATTCTCAAAAGTAGCGAAAATTGGACATTTTTCAAAAGAGGAACGATTTTTGACTGTAATAGTTTAAACAGGATTTTGGAAATTTAAATATTCAGAAGTTCAAAATA</canonical>
            <polymorphic>CTCCATCATTGGGCAATTCTCAACACAATGGCTGCCATCACAATGGGTGCACTTCATTTCCATCTCGTATCCCCCGGAAAAGCATTCAGAAGTGAATTCAAAACGAAAATCTGTTTGTTTGAGAGTCTTTGCTTTGGAAAGTCCCTTGAAATCTACATTTTCTTTGATGAAGAACTCCTCACAGCAAATTTGTTTCTCGATTAACGGTGYGATTTTGAGACTTCCAAATGTTGACGATGGCTTTGGAACTGCTGGTGGTTCTTGTCGTGGGGATTCGTCGAAGGAAGAGTCTCTCTTGGTGGGAGCGTCTTTTTCCTTTTTCGGTGTGCTTTCTGGATCATTCTCCAAAGACTCCAGTTTCGGGACATCTTTTGCATTTTCAGTATCATTATCCAATGCTTTCAAAGGCTCATCTGACGTTTCCAGTTTTGGGACAGCTCCAGCCTCCTCAGGGGCATTCTCCGATGCTTTCAGAGAAGACTCTTCTGGTGTTTCCACAGCTTCTGGAATCGGACGGGCGATGACACAGTTGACGAAATGAACACGGGTGGTCTCAATTTCTTGAACTGGTTCCGGGAACTTTTCAGCCTCTTCACGAGCATTCTCCAACGCTTTCAAAGACTCATCTGGTGTTTCCACAGCGTCAGCTTGAATCTGTTGAGGCTGGGTAATGACACAATTGATGGAAAATACATTGGCAGTCTCTGGTTCCTGAACGTTTGGAGTCACTTTTGGGACCTCAGAAACTTGATTTTCAGCGTCAGATGGTATTTCCTGCAAATAATATGCTTTTTAACCCAATTTTTTGAATTTGGTGCCAAAATGCCGGTGTCCGAGTAAAAGGGAAAAAAGGCGTGCCTAAGAAAGCCTAAGAAAATGCTGAAACTGTTAAAATTCTCAAAAGTAGCGAAAATTGGACATTTTTCAAAAGAGGAACGATTTTTGACTGTAATAGTTTAAACAGGATTTTGGAAATTTAAATATTCAGAAGTTCAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>163 143 89 87 52 46 45 43 38 37 32 29 28 26 25 25 18 15 14 12 9 6 6 6 2 2 2</canonical_bands>
                <polymorphic_bands>163 143 89 87 52 48 45 43 38 37 32 29 28 26 25 25 18 15 14 12 9 6 6 6 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTGAAATCTACATTTTCTTTG</pcr_primer_p1>
		<pcr_primer_p2>ATGATACTGAAAATGCAAAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CCTTGAAATCTACATTTTCTTTGATGAAGAACTCCTCACAGCAAATTTGTTTCTCGATTAACGGTGYGATTTTGAGACTTCCAAATGTTGACGATGGCTTTGGAACTGCTGGTGGTTCTTGTCGTGGGGATTCGTCGAAGGAAGAGTCTCTCTTGGTGGGAGCGTCTTTTTCCTTTTTCGGTGTGCTTTCTGGATCATTCTCCAAAGACTCCAGTTTCGGGACATCTTTTGCATTTTCAGTATCATTATCCAATGCTTTCAAAGGCTCATCTGACGTTTCCAGTTTTGGGACAGCTCCAGCCTCCTCAGGGGCATTCTCCGATGCTTTCAGAGAAGACTCTTCTGGTGTTTCCACATCTTCTGGAATCGGACGGGCGAT</canonical_amplicon>
		<polymorphic_amplicon>CCTTGAAATCTACATTTTCTTTGATGAAGAACTCCTCACAGCAAATTTGTTTCTCGATTAACGGTGYGATTTTGAGACTTCCAAATGTTGACGATGGCTTTGGAACTGCTGGTGGTTCTTGTCGTGGGGATTCGTCGAAGGAAGAGTCTCTCTTGGTGGGAGCGTCTTTTTCCTTTTTCGGTGTGCTTTCTGGATCATTCTCCAAAGACTCCAGTTTCGGGACATCTTTTGCATTTTCAGTATCATTATCCAATGCTTTCAAAGGCTCATCTGACGTTTCCAGTTTTGGGACAGCTCCAGCCTCCTCAGGGGCATTCTCCGATGCTTTCAGAGAAGACTCTTCTGGTGTTTCCACAGCTTCTGGAATCGGACGGGCGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34172</snp_id>
        <super_contig>c008901283.Contig1</super_contig>
        <contig_pos>444</contig_pos>
        <strand>+</strand>
        <context>ACAGCTCCAG[C/T]CTCCTCAGGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATGCTTTCAAAGGCTCATCTGACGTTTCCAGTTTTGGGACAGCTCCAG</left_flank>
        <right_flank>CTCCTCAGGGGCATTCTCCGATGCTTTCAGAGAAGACTCTTCTGGTGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCATCATTGGGCAATTCTCAACACAATGGCTGCCATCACAATGGGTGCACTTCATTTCCATCTCGTATCCCCCGGAAAAGCATTCAGAAGTGAATTCAAAACGAAAATCTGTTTGTTTGAGAGTCTTTGCTTTGGAAAGTCCCTTGAAATCTACATTTTCTTTGATGAAGAACTCCTCACAGCAAATTTGTTTCTCGATTAACGGTGTGATTTTGAGACTTCCAAATGTTGACGATGGCTTTGGAACTGCTGGTGGTTCTTGTCGTGGGGATTCGTCGAAGGAAGAGTCTCTCTTGGTGGGAGCGTCTTTTTCCTTTTTCGGTGTGCTTTCTGGATCATTCTCCAAAGACTCCAGTTTCGGGACATCTTTTGCATTTTCAGTATCATTATCCAATGCTTTCAAAGGCTCATCTGACGTTTCCAGTTTTGGGACAGCTCCAGCCTCCTCAGGGGCATTCTCCGATGCTTTCAGAGAAGACTCTTCTGGTGTTTCCACAGCTTCTGGAATCGGACGGGCGATGACACAGTTGACGAAATGAACACGGGTGGTCTCAATTTCTTGAACTGGTTCCGGGAACTTTTCAGCCTCTTCACGAGCATTCTCCAACGCTTTCAAAGACTCATCTGGTGTTTCCACAGCGTCAGCTTGAATCTGTTGAGGCTGGGTAATGACACAATTGATGGAAAATACATTGGCAGTCTCTGGTTCCTGAACGTTTGGAGTCACTTTTGGGACCTCAGAAACTTGATTTTCAGCGTCAGATGGTATTTCCTGCAAATAATATGCTTTTTAACCCAATTTTTTGAATTTGGTGCCAAAATGCCGGTGTCCGAGTAAAAGGGAAAAAAGGCGTGCCTAAGAAAGCCTAAGAAAATGCTGAAACTGTTAAAATTCTCAAAAGTAGCGAAAATTGGACATTTTTCAAAAGAGGAACGATTTTTGACTGTAATAGTTTAAACAGGATTTTGGAAATTTAAATATTCAGAAGTTCAAAATA</canonical>
            <polymorphic>CTCCATCATTGGGCAATTCTCAACACAATGGCTGCCATCACAATGGGTGCACTTCATTTCCATCTCGTATCCCCCGGAAAAGCATTCAGAAGTGAATTCAAAACGAAAATCTGTTTGTTTGAGAGTCTTTGCTTTGGAAAGTCCCTTGAAATCTACATTTTCTTTGATGAAGAACTCCTCACAGCAAATTTGTTTCTCGATTAACGGTGTGATTTTGAGACTTCCAAATGTTGACGATGGCTTTGGAACTGCTGGTGGTTCTTGTCGTGGGGATTCGTCGAAGGAAGAGTCTCTCTTGGTGGGAGCGTCTTTTTCCTTTTTCGGTGTGCTTTCTGGATCATTCTCCAAAGACTCCAGTTTCGGGACATCTTTTGCATTTTCAGTATCATTATCCAATGCTTTCAAAGGCTCATCTGACGTTTCCAGTTTTGGGACAGCTCCAGYCTCCTCAGGGGCATTCTCCGATGCTTTCAGAGAAGACTCTTCTGGTGTTTCCACAGCTTCTGGAATCGGACGGGCGATGACACAGTTGACGAAATGAACACGGGTGGTCTCAATTTCTTGAACTGGTTCCGGGAACTTTTCAGCCTCTTCACGAGCATTCTCCAACGCTTTCAAAGACTCATCTGGTGTTTCCACAGCGTCAGCTTGAATCTGTTGAGGCTGGGTAATGACACAATTGATGGAAAATACATTGGCAGTCTCTGGTTCCTGAACGTTTGGAGTCACTTTTGGGACCTCAGAAACTTGATTTTCAGCGTCAGATGGTATTTCCTGCAAATAATATGCTTTTTAACCCAATTTTTTGAATTTGGTGCCAAAATGCCGGTGTCCGAGTAAAAGGGAAAAAAGGCGTGCCTAAGAAAGCCTAAGAAAATGCTGAAACTGTTAAAATTCTCAAAAGTAGCGAAAATTGGACATTTTTCAAAAGAGGAACGATTTTTGACTGTAATAGTTTAAACAGGATTTTGGAAATTTAAATATTCAGAAGTTCAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>550 351 69 21 9</canonical_bands>
                <polymorphic_bands>571 351 69 9</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>209 204 168 133 87 60 57 31 29 16 6</canonical_bands>
                <polymorphic_bands>209 204 168 133 87 63 60 31 29 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTATCATTATCCAATGCTTTCA</pcr_primer_p1>
		<pcr_primer_p2>AAACACCAGATGAGTCTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AGTATCATTATCCAATGCTTTCAAAGGCTCATCTGACGTTTCCAGTTTTGGGACAGCTCCAGYCTCCTCAGGGGCATTCTCCGATGCTTTCAGAGAAGACTCTTCTGGTGTTTCCACACCTTCTGGAATCGGACGGGCGATGACACAGTTGACGAAATGAACACGGGTGGTCTCAATTTCTTGAACTGGTTCCGGGAACTTTTCAGCCTCTTCACGAGCATTCTCCAACGCTTTCAAAGACTCATCTGGTGTTT</canonical_amplicon>
		<polymorphic_amplicon>AGTATCATTATCCAATGCTTTCAAAGGCTCATCTGACGTTTCCAGTTTTGGGACAGCTCCAGYCTCCTCAGGGGCATTCTCCGATGCTTTCAGAGAAGACTCTTCTGGTGTTTCCACAGCTTCTGGAATCGGACGGGCGATGACACAGTTGACGAAATGAACACGGGTGGTCTCAATTTCTTGAACTGGTTCCGGGAACTTTTCAGCCTCTTCACGAGCATTCTCCAACGCTTTCAAAGACTCATCTGGTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34173</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>14306</contig_pos>
        <strand></strand>
        <context>GTGATGAGTT[C/T]GCCAARCCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTTACTTATACTTTGAATTTTGAATCAGTTTTCTGTGAGTGATGAGTT</left_flank>
        <right_flank>GCCAAACCATTTTCAAACAATAAGATTTCCTAGAAATTTAATGTTTCCAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAATCTAAAAGTCGGATATTTACCGTAAACACTCTATTATAAGGTCCCTCGGGCACCTGAAAATCTCGGGATTGGCGTTCATGTCGATTTACGAGGCCCCTTTGCACATTTTCTTCCGTACTCTCCAGTTGAATTCCATTTATTTGTATCATCCTATAAGTACATTTTTAATTTTCATAGTTATTTTTTAGTTAATTTGGTTATTTTGTTCATTTTGAACTGTCTGTGGAGGATTACGGTAGATAAGCAGGAAGAAAAAAAGGATCCTCCAACTTTGATCCAACTTATCTCGGTTTCGGTGAGAGATATCAAAAAGTGGTCAACTGATAAAATGATGGTGATAAAACAATAAATGTTCTCTCAGTTGACAACTTTTTGATATCTTTGACTGGTATTGAGATAAATTAGATCAAAGTTAAACCCCAACTTGTTCAAAAAAGTTTTACCGTTTTACTTATACTTTGAATTTTGAATCAGTTTTCTGTGAGTGATGAGTTCGCCAAACCATTTTCAAACAATAAGATTTCCTAGAAATTTAATGTTTCCAATTATACCAAAATTTCAAATATTTCAAAATCAGAAAAAAATTATACGATTCGGACTTAAATTCAAATATTATTTTTTTTTAGTGTAAGTCTTATCTATTCTAGTTGAGAACCCCCAAAGAAAACCGAATAGGCATACTGTATCTCTAAAAATCATCTCTATTAATTTTTCGTCACCAAAAAAACTGTATCTACTTTGGATTTTCATCCAGTTTTCGGAACAGACGTTTTATCTCGAAAGCATCTCAATGCTATATTGAAACAAGGAAGTGGATTTTGATTTTTCGAACACTTTAGAATAAAATAGTGATCATTTTAAATTGCCGTTTTTGAGGATTCGAAACTTGATTTATCTCATTTCCAGTTGAAGATATCAAAAAGTAGTCAACTGAAAAAATTTTGACCATTTTATCAAAAACATTTTATCAGTTGACCACTTTTTGATATCTCTTA</canonical>
            <polymorphic>AGAAATCTAAAAGTCGGATATTTACCGTAAACACTCTATTATAAGGTCCCTCGGGCACCTGAAAATCTCGGGATTGGCGTTCATGTCGATTTACGAGGCCCCTTTGCACATTTTCTTCCGTACTCTCCAGTTGAATTCCATTTATTTGTATCATCCTATAAGTACATTTTTAATTTTCATAGTTATTTTTTAGTTAATTTGGTTATTTTGTTCATTTTGAACTGTCTGTGGAGGATTACGGTAGATAAGCAGGAAGAAAAAAAGGATCCTCCAACTTTGATCCAACTTATCTCGGTTTCGGTGAGAGATATCAAAAAGTGGTCAACTGATAAAATGATGGTGATAAAACAATAAATGTTCTCTCAGTTGACAACTTTTTGATATCTTTGACTGGTATTGAGATAAATTAGATCAAAGTTAAACCCCAACTTGTTCAAAAAAGTTTTACCGTTTTACTTATACTTTGAATTTTGAATCAGTTTTCTGTGAGTGATGAGTTYGCCAAACCATTTTCAAACAATAAGATTTCCTAGAAATTTAATGTTTCCAATTATACCAAAATTTCAAATATTTCAAAATCAGAAAAAAATTATACGATTCGGACTTAAATTCAAATATTATTTTTTTTTAGTGTAAGTCTTATCTATTCTAGTTGAGAACCCCCAAAGAAAACCGAATAGGCATACTGTATCTCTAAAAATCATCTCTATTAATTTTTCGTCACCAAAAAAACTGTATCTACTTTGGATTTTCATCCAGTTTTCGGAACAGACGTTTTATCTCGAAAGCATCTCAATGCTATATTGAAACAAGGAAGTGGATTTTGATTTTTCGAACACTTTAGAATAAAATAGTGATCATTTTAAATTGCCGTTTTTGAGGATTCGAAACTTGATTTATCTCATTTCCAGTTGAAGATATCAAAAAGTAGTCAACTGAAAAAATTTTGACCATTTTATCAAAAACATTTTATCAGTTGACCACTTTTTGATATCTCTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTACCGTTTTACTTATACTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>ATACAGTATGCCTATTCGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTACCGTTTTACTTATACTTTGAATTTTGAATCAGTTTTCTGTGAGTGATGAGTTCGCCAAACCATTTTCAAACAATAAGATTTCCTAGAAATTTAATGTTTCCAATTATACCAAAATTTCAAATATTTCAAAATCAGAAAAAAATTATACGATTCGGACTTAAATTCAAATATTATTTTTTTTTAGTGTAAGTCTTATCTATTCTAGTTGAGAACCCCCAAAGAAAACCGAATAGGCATACTGTAT</canonical_amplicon>
		<polymorphic_amplicon>TTTTACCGTTTTACTTATACTTTGAATTTTGAATCAGTTTTCTGTGAGTGATGAGTTYGCCAAACCATTTTCAAACAATAAGATTTCCTAGAAATTTAATGTTTCCAATTATACCAAAATTTCAAATATTTCAAAATCAGAAAAAAATTATACGATTCGGACTTAAATTCAAATATTATTTTTTTTTAGTGTAAGTCTTATCTATTCTAGTTGAGAACCCCCAAAGAAAACCGAATAGGCATACTGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34174</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>14312</contig_pos>
        <strand></strand>
        <context>AGTTYGCCAA[A/G]CCATTTTCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTATACTTTGAATTTTGAATCAGTTTTCTGTGAGTGATGAGTTCGCCAA</left_flank>
        <right_flank>CCATTTTCAAACAATAAGATTTCCTAGAAATTTAATGTTTCCAATTATAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAAAAGTCGGATATTTACCGTAAACACTCTATTATAAGGTCCCTCGGGCACCTGAAAATCTCGGGATTGGCGTTCATGTCGATTTACGAGGCCCCTTTGCACATTTTCTTCCGTACTCTCCAGTTGAATTCCATTTATTTGTATCATCCTATAAGTACATTTTTAATTTTCATAGTTATTTTTTAGTTAATTTGGTTATTTTGTTCATTTTGAACTGTCTGTGGAGGATTACGGTAGATAAGCAGGAAGAAAAAAAGGATCCTCCAACTTTGATCCAACTTATCTCGGTTTCGGTGAGAGATATCAAAAAGTGGTCAACTGATAAAATGATGGTGATAAAACAATAAATGTTCTCTCAGTTGACAACTTTTTGATATCTTTGACTGGTATTGAGATAAATTAGATCAAAGTTAAACCCCAACTTGTTCAAAAAAGTTTTACCGTTTTACTTATACTTTGAATTTTGAATCAGTTTTCTGTGAGTGATGAGTTCGCCAAACCATTTTCAAACAATAAGATTTCCTAGAAATTTAATGTTTCCAATTATACCAAAATTTCAAATATTTCAAAATCAGAAAAAAATTATACGATTCGGACTTAAATTCAAATATTATTTTTTTTTAGTGTAAGTCTTATCTATTCTAGTTGAGAACCCCCAAAGAAAACCGAATAGGCATACTGTATCTCTAAAAATCATCTCTATTAATTTTTCGTCACCAAAAAAACTGTATCTACTTTGGATTTTCATCCAGTTTTCGGAACAGACGTTTTATCTCGAAAGCATCTCAATGCTATATTGAAACAAGGAAGTGGATTTTGATTTTTCGAACACTTTAGAATAAAATAGTGATCATTTTAAATTGCCGTTTTTGAGGATTCGAAACTTGATTTATCTCATTTCCAGTTGAAGATATCAAAAAGTAGTCAACTGAAAAAATTTTGACCATTTTATCAAAAACATTTTATCAGTTGACCACTTTTTGATATCTCTTACAGTAA</canonical>
            <polymorphic>CTAAAAGTCGGATATTTACCGTAAACACTCTATTATAAGGTCCCTCGGGCACCTGAAAATCTCGGGATTGGCGTTCATGTCGATTTACGAGGCCCCTTTGCACATTTTCTTCCGTACTCTCCAGTTGAATTCCATTTATTTGTATCATCCTATAAGTACATTTTTAATTTTCATAGTTATTTTTTAGTTAATTTGGTTATTTTGTTCATTTTGAACTGTCTGTGGAGGATTACGGTAGATAAGCAGGAAGAAAAAAAGGATCCTCCAACTTTGATCCAACTTATCTCGGTTTCGGTGAGAGATATCAAAAAGTGGTCAACTGATAAAATGATGGTGATAAAACAATAAATGTTCTCTCAGTTGACAACTTTTTGATATCTTTGACTGGTATTGAGATAAATTAGATCAAAGTTAAACCCCAACTTGTTCAAAAAAGTTTTACCGTTTTACTTATACTTTGAATTTTGAATCAGTTTTCTGTGAGTGATGAGTTCGCCAARCCATTTTCAAACAATAAGATTTCCTAGAAATTTAATGTTTCCAATTATACCAAAATTTCAAATATTTCAAAATCAGAAAAAAATTATACGATTCGGACTTAAATTCAAATATTATTTTTTTTTAGTGTAAGTCTTATCTATTCTAGTTGAGAACCCCCAAAGAAAACCGAATAGGCATACTGTATCTCTAAAAATCATCTCTATTAATTTTTCGTCACCAAAAAAACTGTATCTACTTTGGATTTTCATCCAGTTTTCGGAACAGACGTTTTATCTCGAAAGCATCTCAATGCTATATTGAAACAAGGAAGTGGATTTTGATTTTTCGAACACTTTAGAATAAAATAGTGATCATTTTAAATTGCCGTTTTTGAGGATTCGAAACTTGATTTATCTCATTTCCAGTTGAAGATATCAAAAAGTAGTCAACTGAAAAAATTTTGACCATTTTATCAAAAACATTTTATCAGTTGACCACTTTTTGATATCTCTTACAGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTACCGTTTTACTTATACTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>ATACAGTATGCCTATTCGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTACCGTTTTACTTATACTTTGAATTTTGAATCAGTTTTCTGTGAGTGATGAGTTCGCCAAACCATTTTCAAACAATAAGATTTCCTAGAAATTTAATGTTTCCAATTATACCAAAATTTCAAATATTTCAAAATCAGAAAAAAATTATACGATTCGGACTTAAATTCAAATATTATTTTTTTTTAGTGTAAGTCTTATCTATTCTAGTTGAGAACCCCCAAAGAAAACCGAATAGGCATACTGTAT</canonical_amplicon>
		<polymorphic_amplicon>TTTTACCGTTTTACTTATACTTTGAATTTTGAATCAGTTTTCTGTGAGTGATGAGTTCGCCAARCCATTTTCAAACAATAAGATTTCCTAGAAATTTAATGTTTCCAATTATACCAAAATTTCAAATATTTCAAAATCAGAAAAAAATTATACGATTCGGACTTAAATTCAAATATTATTTTTTTTTAGTGTAAGTCTTATCTATTCTAGTTGAGAACCCCCAAAGAAAACCGAATAGGCATACTGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34175</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>14546</contig_pos>
        <strand></strand>
        <context>AAACTGTATC[T/C]ACTTTGGAYT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATCTCTAAAAATCATCTCTATTAATTTTTCGTCACCAAAAAAACTGTATC</left_flank>
        <right_flank>ACTTTGGATTTTCATCCAGTTTTCGGAACAGACGTTTTATCTCGAAAGCA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAGATAAGCAGGAAGAAAAAAAGGATCCTCCAACTTTGATCCAACTTATCTCGGTTTCGGTGAGAGATATCAAAAAGTGGTCAACTGATAAAATGATGGTGATAAAACAATAAATGTTCTCTCAGTTGACAACTTTTTGATATCTTTGACTGGTATTGAGATAAATTAGATCAAAGTTAAACCCCAACTTGTTCAAAAAAGTTTTACCGTTTTACTTATACTTTGAATTTTGAATCAGTTTTCTGTGAGTGATGAGTTCGCCAAACCATTTTCAAACAATAAGATTTCCTAGAAATTTAATGTTTCCAATTATACCAAAATTTCAAATATTTCAAAATCAGAAAAAAATTATACGATTCGGACTTAAATTCAAATATTATTTTTTTTTAGTGTAAGTCTTATCTATTCTAGTTGAGAACCCCCAAAGAAAACCGAATAGGCATACTGTATCTCTAAAAATCATCTCTATTAATTTTTCGTCACCAAAAAAACTGTATCTACTTTGGATTTTCATCCAGTTTTCGGAACAGACGTTTTATCTCGAAAGCATCTCAATGCTATATTGAAACAAGGAAGTGGATTTTGATTTTTCGAACACTTTAGAATAAAATAGTGATCATTTTAAATTGCCGTTTTTGAGGATTCGAAACTTGATTTATCTCATTTCCAGTTGAAGATATCAAAAAGTAGTCAACTGAAAAAATTTTGACCATTTTATCAAAAACATTTTATCAGTTGACCACTTTTTGATATCTCTTACAGTAACCGAGATAAGTTGAATCAAAGGTGGGGGGGGGGCTCCTAACAAGCTTGGCTACTGTAATCCCCACTACTCGGAAATTATGATTCTTATTTAGATTGTTGCTTCTTAACGAATATGTTGGTCCTTTTCTAATTTTTTCCTTCTCAGAAATTTGGAAAAATACTGTTTCAATTAGTTTTAAAATTTGAATTTGAAGCTAAATTTAACATTATCTCCGGTTTTTGAATAAAAATTTG</canonical>
            <polymorphic>GTAGATAAGCAGGAAGAAAAAAAGGATCCTCCAACTTTGATCCAACTTATCTCGGTTTCGGTGAGAGATATCAAAAAGTGGTCAACTGATAAAATGATGGTGATAAAACAATAAATGTTCTCTCAGTTGACAACTTTTTGATATCTTTGACTGGTATTGAGATAAATTAGATCAAAGTTAAACCCCAACTTGTTCAAAAAAGTTTTACCGTTTTACTTATACTTTGAATTTTGAATCAGTTTTCTGTGAGTGATGAGTTCGCCAAACCATTTTCAAACAATAAGATTTCCTAGAAATTTAATGTTTCCAATTATACCAAAATTTCAAATATTTCAAAATCAGAAAAAAATTATACGATTCGGACTTAAATTCAAATATTATTTTTTTTTAGTGTAAGTCTTATCTATTCTAGTTGAGAACCCCCAAAGAAAACCGAATAGGCATACTGTATCTCTAAAAATCATCTCTATTAATTTTTCGTCACCAAAAAAACTGTATCYACTTTGGATTTTCATCCAGTTTTCGGAACAGACGTTTTATCTCGAAAGCATCTCAATGCTATATTGAAACAAGGAAGTGGATTTTGATTTTTCGAACACTTTAGAATAAAATAGTGATCATTTTAAATTGCCGTTTTTGAGGATTCGAAACTTGATTTATCTCATTTCCAGTTGAAGATATCAAAAAGTAGTCAACTGAAAAAATTTTGACCATTTTATCAAAAACATTTTATCAGTTGACCACTTTTTGATATCTCTTACAGTAACCGAGATAAGTTGAATCAAAGGTGGGGGGGGGGCTCCTAACAAGCTTGGCTACTGTAATCCCCACTACTCGGAAATTATGATTCTTATTTAGATTGTTGCTTCTTAACGAATATGTTGGTCCTTTTCTAATTTTTTCCTTCTCAGAAATTTGGAAAAATACTGTTTCAATTAGTTTTAAAATTTGAATTTGAAGCTAAATTTAACATTATCTCCGGTTTTTGAATAAAAATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAATTATACCAAAATTTCA</pcr_primer_p1>
		<pcr_primer_p2>TGAGATGCTTTCGAGATAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAATTATACCAAAATTTCAAATATTTCAAAATCAGAAAAAAATTATACGATTCGGACTTAAATTCAAATATTATTTTTTTTTAGTGTAAGTCTTATCTATTCTAGTTGAGAACCCCCAAAGAAAACCGAATAGGCATACTGTATCTCTAAAAATCATCTCTATTAATTTTTCGTCACCAAAAAAACTGTATCTACTTTGGATTTTCATCCAGTTTTCGGAACAGACGTTTTATCTCGAAAGCATCTCA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAATTATACCAAAATTTCAAATATTTCAAAATCAGAAAAAAATTATACGATTCGGACTTAAATTCAAATATTATTTTTTTTTAGTGTAAGTCTTATCTATTCTAGTTGAGAACCCCCAAAGAAAACCGAATAGGCATACTGTATCTCTAAAAATCATCTCTATTAATTTTTCGTCACCAAAAAAACTGTATCYACTTTGGATTTTCATCCAGTTTTCGGAACAGACGTTTTATCTCGAAAGCATCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34176</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>14555</contig_pos>
        <strand></strand>
        <context>CYACTTTGGA[T/C]TTTCATCCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATCATCTCTATTAATTTTTCGTCACCAAAAAAACTGTATCTACTTTGGA</left_flank>
        <right_flank>TTTCATCCAGTTTTCGGAACAGACGTTTTATCTCGAAAGCATCTCAATGC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGGAAGAAAAAAAGGATCCTCCAACTTTGATCCAACTTATCTCGGTTTCGGTGAGAGATATCAAAAAGTGGTCAACTGATAAAATGATGGTGATAAAACAATAAATGTTCTCTCAGTTGACAACTTTTTGATATCTTTGACTGGTATTGAGATAAATTAGATCAAAGTTAAACCCCAACTTGTTCAAAAAAGTTTTACCGTTTTACTTATACTTTGAATTTTGAATCAGTTTTCTGTGAGTGATGAGTTCGCCAAACCATTTTCAAACAATAAGATTTCCTAGAAATTTAATGTTTCCAATTATACCAAAATTTCAAATATTTCAAAATCAGAAAAAAATTATACGATTCGGACTTAAATTCAAATATTATTTTTTTTTAGTGTAAGTCTTATCTATTCTAGTTGAGAACCCCCAAAGAAAACCGAATAGGCATACTGTATCTCTAAAAATCATCTCTATTAATTTTTCGTCACCAAAAAAACTGTATCTACTTTGGATTTTCATCCAGTTTTCGGAACAGACGTTTTATCTCGAAAGCATCTCAATGCTATATTGAAACAAGGAAGTGGATTTTGATTTTTCGAACACTTTAGAATAAAATAGTGATCATTTTAAATTGCCGTTTTTGAGGATTCGAAACTTGATTTATCTCATTTCCAGTTGAAGATATCAAAAAGTAGTCAACTGAAAAAATTTTGACCATTTTATCAAAAACATTTTATCAGTTGACCACTTTTTGATATCTCTTACAGTAACCGAGATAAGTTGAATCAAAGGTGGGGGGGGGGCTCCTAACAAGCTTGGCTACTGTAATCCCCACTACTCGGAAATTATGATTCTTATTTAGATTGTTGCTTCTTAACGAATATGTTGGTCCTTTTCTAATTTTTTCCTTCTCAGAAATTTGGAAAAATACTGTTTCAATTAGTTTTAAAATTTGAATTTGAAGCTAAATTTAACATTATCTCCGGTTTTTGAATAAAAATTTGAAATTTCAA</canonical>
            <polymorphic>CAGGAAGAAAAAAAGGATCCTCCAACTTTGATCCAACTTATCTCGGTTTCGGTGAGAGATATCAAAAAGTGGTCAACTGATAAAATGATGGTGATAAAACAATAAATGTTCTCTCAGTTGACAACTTTTTGATATCTTTGACTGGTATTGAGATAAATTAGATCAAAGTTAAACCCCAACTTGTTCAAAAAAGTTTTACCGTTTTACTTATACTTTGAATTTTGAATCAGTTTTCTGTGAGTGATGAGTTCGCCAAACCATTTTCAAACAATAAGATTTCCTAGAAATTTAATGTTTCCAATTATACCAAAATTTCAAATATTTCAAAATCAGAAAAAAATTATACGATTCGGACTTAAATTCAAATATTATTTTTTTTTAGTGTAAGTCTTATCTATTCTAGTTGAGAACCCCCAAAGAAAACCGAATAGGCATACTGTATCTCTAAAAATCATCTCTATTAATTTTTCGTCACCAAAAAAACTGTATCTACTTTGGAYTTTCATCCAGTTTTCGGAACAGACGTTTTATCTCGAAAGCATCTCAATGCTATATTGAAACAAGGAAGTGGATTTTGATTTTTCGAACACTTTAGAATAAAATAGTGATCATTTTAAATTGCCGTTTTTGAGGATTCGAAACTTGATTTATCTCATTTCCAGTTGAAGATATCAAAAAGTAGTCAACTGAAAAAATTTTGACCATTTTATCAAAAACATTTTATCAGTTGACCACTTTTTGATATCTCTTACAGTAACCGAGATAAGTTGAATCAAAGGTGGGGGGGGGGCTCCTAACAAGCTTGGCTACTGTAATCCCCACTACTCGGAAATTATGATTCTTATTTAGATTGTTGCTTCTTAACGAATATGTTGGTCCTTTTCTAATTTTTTCCTTCTCAGAAATTTGGAAAAATACTGTTTCAATTAGTTTTAAAATTTGAATTTGAAGCTAAATTTAACATTATCTCCGGTTTTTGAATAAAAATTTGAAATTTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATNNNNATC</site>
                <isoschizomers>
                    <enzyme>BsaBI</enzyme>
                    <enzyme>Bse8I</enzyme>
                    <enzyme>BseJI</enzyme>
                    <enzyme>BsiBI</enzyme>
                    <enzyme>BsrBRI</enzyme>
                    <enzyme>MamI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTATACGATTCGGACTTAAA</pcr_primer_p1>
		<pcr_primer_p2>TCGAAAAATCAAAATCCACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATTATACGATTCGGACTTAAATTCAAATATTATTTTTTTTTAGTGTAAGTCTTATCTATTCTAGTTGAGAACCCCCAAAGAAAACCGAATAGGCATACTGTATCTCTAAAAATCATCTCTATTAATTTTTCGTCACCAAAAAAACTGTATCTACTTTGGATTTTCATCCAGTTTTCGGAACAGACGTTTTATCTCGAAAGCATCTCAATGCTATATTGAAACAAGGAAGTGGATTTTGATTTTTCGA</canonical_amplicon>
		<polymorphic_amplicon>AAAATTATACGATTCGGACTTAAATTCAAATATTATTTTTTTTTAGTGTAAGTCTTATCTATTCTAGTTGAGAACCCCCAAAGAAAACCGAATAGGCATACTGTATCTCTAAAAATCATCTCTATTAATTTTTCGTCACCAAAAAAACTGTATCTACTTTGGAYTTTCATCCAGTTTTCGGAACAGACGTTTTATCTCGAAAGCATCTCAATGCTATATTGAAACAAGGAAGTGGATTTTGATTTTTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34177</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>14571</contig_pos>
        <strand></strand>
        <context>TCCAGTTTTC[G/A]RAACAGACGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTCGTCACCAAAAAAACTGTATCTACTTTGGATTTTCATCCAGTTTTC</left_flank>
        <right_flank>GAACAGACGTTTTATCTCGAAAGCATCTCAATGCTATATTGAAACAAGGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCTCCAACTTTGATCCAACTTATCTCGGTTTCGGTGAGAGATATCAAAAAGTGGTCAACTGATAAAATGATGGTGATAAAACAATAAATGTTCTCTCAGTTGACAACTTTTTGATATCTTTGACTGGTATTGAGATAAATTAGATCAAAGTTAAACCCCAACTTGTTCAAAAAAGTTTTACCGTTTTACTTATACTTTGAATTTTGAATCAGTTTTCTGTGAGTGATGAGTTCGCCAAACCATTTTCAAACAATAAGATTTCCTAGAAATTTAATGTTTCCAATTATACCAAAATTTCAAATATTTCAAAATCAGAAAAAAATTATACGATTCGGACTTAAATTCAAATATTATTTTTTTTTAGTGTAAGTCTTATCTATTCTAGTTGAGAACCCCCAAAGAAAACCGAATAGGCATACTGTATCTCTAAAAATCATCTCTATTAATTTTTCGTCACCAAAAAAACTGTATCTACTTTGGATTTTCATCCAGTTTTCGGAACAGACGTTTTATCTCGAAAGCATCTCAATGCTATATTGAAACAAGGAAGTGGATTTTGATTTTTCGAACACTTTAGAATAAAATAGTGATCATTTTAAATTGCCGTTTTTGAGGATTCGAAACTTGATTTATCTCATTTCCAGTTGAAGATATCAAAAAGTAGTCAACTGAAAAAATTTTGACCATTTTATCAAAAACATTTTATCAGTTGACCACTTTTTGATATCTCTTACAGTAACCGAGATAAGTTGAATCAAAGGTGGGGGGGGGGCTCCTAACAAGCTTGGCTACTGTAATCCCCACTACTCGGAAATTATGATTCTTATTTAGATTGTTGCTTCTTAACGAATATGTTGGTCCTTTTCTAATTTTTTCCTTCTCAGAAATTTGGAAAAATACTGTTTCAATTAGTTTTAAAATTTGAATTTGAAGCTAAATTTAACATTATCTCCGGTTTTTGAATAAAAATTTGAAATTTCAAAACAAAAACCTAATTT</canonical>
            <polymorphic>ATCCTCCAACTTTGATCCAACTTATCTCGGTTTCGGTGAGAGATATCAAAAAGTGGTCAACTGATAAAATGATGGTGATAAAACAATAAATGTTCTCTCAGTTGACAACTTTTTGATATCTTTGACTGGTATTGAGATAAATTAGATCAAAGTTAAACCCCAACTTGTTCAAAAAAGTTTTACCGTTTTACTTATACTTTGAATTTTGAATCAGTTTTCTGTGAGTGATGAGTTCGCCAAACCATTTTCAAACAATAAGATTTCCTAGAAATTTAATGTTTCCAATTATACCAAAATTTCAAATATTTCAAAATCAGAAAAAAATTATACGATTCGGACTTAAATTCAAATATTATTTTTTTTTAGTGTAAGTCTTATCTATTCTAGTTGAGAACCCCCAAAGAAAACCGAATAGGCATACTGTATCTCTAAAAATCATCTCTATTAATTTTTCGTCACCAAAAAAACTGTATCTACTTTGGATTTTCATCCAGTTTTCRGAACAGACGTTTTATCTCGAAAGCATCTCAATGCTATATTGAAACAAGGAAGTGGATTTTGATTTTTCGAACACTTTAGAATAAAATAGTGATCATTTTAAATTGCCGTTTTTGAGGATTCGAAACTTGATTTATCTCATTTCCAGTTGAAGATATCAAAAAGTAGTCAACTGAAAAAATTTTGACCATTTTATCAAAAACATTTTATCAGTTGACCACTTTTTGATATCTCTTACAGTAACCGAGATAAGTTGAATCAAAGGTGGGGGGGGGGCTCCTAACAAGCTTGGCTACTGTAATCCCCACTACTCGGAAATTATGATTCTTATTTAGATTGTTGCTTCTTAACGAATATGTTGGTCCTTTTCTAATTTTTTCCTTCTCAGAAATTTGGAAAAATACTGTTTCAATTAGTTTTAAAATTTGAATTTGAAGCTAAATTTAACATTATCTCCGGTTTTTGAATAAAAATTTGAAATTTCAAAACAAAAACCTAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>497 312 191</canonical_bands>
                <polymorphic_bands>809 191</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTATACGATTCGGACTTAAA</pcr_primer_p1>
		<pcr_primer_p2>TCGAAAAATCAAAATCCACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATTATACGATTCGGACTTAAATTCAAATATTATTTTTTTTTAGTGTAAGTCTTATCTATTCTAGTTGAGAACCCCCAAAGAAAACCGAATAGGCATACTGTATCTCTAAAAATCATCTCTATTAATTTTTCGTCACCAAAAAAACTGTATCTACTTTGGATTTTCATCCAGTTTTCGGAACAGACGTTTTATCTCGAAAGCATCTCAATGCTATATTGAAACAAGGAAGTGGATTTTGATTTTTCGA</canonical_amplicon>
		<polymorphic_amplicon>AAAATTATACGATTCGGACTTAAATTCAAATATTATTTTTTTTTAGTGTAAGTCTTATCTATTCTAGTTGAGAACCCCCAAAGAAAACCGAATAGGCATACTGTATCTCTAAAAATCATCTCTATTAATTTTTCGTCACCAAAAAAACTGTATCTACTTTGGATTTTCATCCAGTTTTCRGAACAGACGTTTTATCTCGAAAGCATCTCAATGCTATATTGAAACAAGGAAGTGGATTTTGATTTTTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34178</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>14572</contig_pos>
        <strand></strand>
        <context>CCAGTTTTCR[G/A]AACAGACGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTCGTCACCAAAAAAACTGTATCTACTTTGGATTTTCATCCAGTTTTCG</left_flank>
        <right_flank>AACAGACGTTTTATCTCGAAAGCATCTCAATGCTATATTGAAACAAGGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTCCAACTTTGATCCAACTTATCTCGGTTTCGGTGAGAGATATCAAAAAGTGGTCAACTGATAAAATGATGGTGATAAAACAATAAATGTTCTCTCAGTTGACAACTTTTTGATATCTTTGACTGGTATTGAGATAAATTAGATCAAAGTTAAACCCCAACTTGTTCAAAAAAGTTTTACCGTTTTACTTATACTTTGAATTTTGAATCAGTTTTCTGTGAGTGATGAGTTCGCCAAACCATTTTCAAACAATAAGATTTCCTAGAAATTTAATGTTTCCAATTATACCAAAATTTCAAATATTTCAAAATCAGAAAAAAATTATACGATTCGGACTTAAATTCAAATATTATTTTTTTTTAGTGTAAGTCTTATCTATTCTAGTTGAGAACCCCCAAAGAAAACCGAATAGGCATACTGTATCTCTAAAAATCATCTCTATTAATTTTTCGTCACCAAAAAAACTGTATCTACTTTGGATTTTCATCCAGTTTTCGGAACAGACGTTTTATCTCGAAAGCATCTCAATGCTATATTGAAACAAGGAAGTGGATTTTGATTTTTCGAACACTTTAGAATAAAATAGTGATCATTTTAAATTGCCGTTTTTGAGGATTCGAAACTTGATTTATCTCATTTCCAGTTGAAGATATCAAAAAGTAGTCAACTGAAAAAATTTTGACCATTTTATCAAAAACATTTTATCAGTTGACCACTTTTTGATATCTCTTACAGTAACCGAGATAAGTTGAATCAAAGGTGGGGGGGGGGCTCCTAACAAGCTTGGCTACTGTAATCCCCACTACTCGGAAATTATGATTCTTATTTAGATTGTTGCTTCTTAACGAATATGTTGGTCCTTTTCTAATTTTTTCCTTCTCAGAAATTTGGAAAAATACTGTTTCAATTAGTTTTAAAATTTGAATTTGAAGCTAAATTTAACATTATCTCCGGTTTTTGAATAAAAATTTGAAATTTCAAAACAAAAACCTAATTTA</canonical>
            <polymorphic>TCCTCCAACTTTGATCCAACTTATCTCGGTTTCGGTGAGAGATATCAAAAAGTGGTCAACTGATAAAATGATGGTGATAAAACAATAAATGTTCTCTCAGTTGACAACTTTTTGATATCTTTGACTGGTATTGAGATAAATTAGATCAAAGTTAAACCCCAACTTGTTCAAAAAAGTTTTACCGTTTTACTTATACTTTGAATTTTGAATCAGTTTTCTGTGAGTGATGAGTTCGCCAAACCATTTTCAAACAATAAGATTTCCTAGAAATTTAATGTTTCCAATTATACCAAAATTTCAAATATTTCAAAATCAGAAAAAAATTATACGATTCGGACTTAAATTCAAATATTATTTTTTTTTAGTGTAAGTCTTATCTATTCTAGTTGAGAACCCCCAAAGAAAACCGAATAGGCATACTGTATCTCTAAAAATCATCTCTATTAATTTTTCGTCACCAAAAAAACTGTATCTACTTTGGATTTTCATCCAGTTTTCGRAACAGACGTTTTATCTCGAAAGCATCTCAATGCTATATTGAAACAAGGAAGTGGATTTTGATTTTTCGAACACTTTAGAATAAAATAGTGATCATTTTAAATTGCCGTTTTTGAGGATTCGAAACTTGATTTATCTCATTTCCAGTTGAAGATATCAAAAAGTAGTCAACTGAAAAAATTTTGACCATTTTATCAAAAACATTTTATCAGTTGACCACTTTTTGATATCTCTTACAGTAACCGAGATAAGTTGAATCAAAGGTGGGGGGGGGGCTCCTAACAAGCTTGGCTACTGTAATCCCCACTACTCGGAAATTATGATTCTTATTTAGATTGTTGCTTCTTAACGAATATGTTGGTCCTTTTCTAATTTTTTCCTTCTCAGAAATTTGGAAAAATACTGTTTCAATTAGTTTTAAAATTTGAATTTGAAGCTAAATTTAACATTATCTCCGGTTTTTGAATAAAAATTTGAAATTTCAAAACAAAAACCTAATTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>496 312 192</canonical_bands>
                <polymorphic_bands>808 192</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>315 312 164 116 73 20</canonical_bands>
                <polymorphic_bands>476 315 116 73 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTATACGATTCGGACTTAAA</pcr_primer_p1>
		<pcr_primer_p2>TCGAAAAATCAAAATCCACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATTATACGATTCGGACTTAAATTCAAATATTATTTTTTTTTAGTGTAAGTCTTATCTATTCTAGTTGAGAACCCCCAAAGAAAACCGAATAGGCATACTGTATCTCTAAAAATCATCTCTATTAATTTTTCGTCACCAAAAAAACTGTATCTACTTTGGATTTTCATCCAGTTTTCGGAACAGACGTTTTATCTCGAAAGCATCTCAATGCTATATTGAAACAAGGAAGTGGATTTTGATTTTTCGA</canonical_amplicon>
		<polymorphic_amplicon>AAAATTATACGATTCGGACTTAAATTCAAATATTATTTTTTTTTAGTGTAAGTCTTATCTATTCTAGTTGAGAACCCCCAAAGAAAACCGAATAGGCATACTGTATCTCTAAAAATCATCTCTATTAATTTTTCGTCACCAAAAAAACTGTATCTACTTTGGATTTTCATCCAGTTTTCGRAACAGACGTTTTATCTCGAAAGCATCTCAATGCTATATTGAAACAAGGAAGTGGATTTTGATTTTTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34179</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>14618</contig_pos>
        <strand></strand>
        <context>TATTGAAACA[A/G]GGAAGTGGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGGAACAGACGTTTTATCTCGAAAGCATCTCAATGCTATATTGAAACA</left_flank>
        <right_flank>GGAAGTGGATTTTGATTTTTCGAACACTTTAGAATAAAATAGTGATCATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAGTGGTCAACTGATAAAATGATGGTGATAAAACAATAAATGTTCTCTCAGTTGACAACTTTTTGATATCTTTGACTGGTATTGAGATAAATTAGATCAAAGTTAAACCCCAACTTGTTCAAAAAAGTTTTACCGTTTTACTTATACTTTGAATTTTGAATCAGTTTTCTGTGAGTGATGAGTTCGCCAAACCATTTTCAAACAATAAGATTTCCTAGAAATTTAATGTTTCCAATTATACCAAAATTTCAAATATTTCAAAATCAGAAAAAAATTATACGATTCGGACTTAAATTCAAATATTATTTTTTTTTAGTGTAAGTCTTATCTATTCTAGTTGAGAACCCCCAAAGAAAACCGAATAGGCATACTGTATCTCTAAAAATCATCTCTATTAATTTTTCGTCACCAAAAAAACTGTATCTACTTTGGATTTTCATCCAGTTTTCGGAACAGACGTTTTATCTCGAAAGCATCTCAATGCTATATTGAAACAAGGAAGTGGATTTTGATTTTTCGAACACTTTAGAATAAAATAGTGATCATTTTAAATTGCCGTTTTTGAGGATTCGAAACTTGATTTATCTCATTTCCAGTTGAAGATATCAAAAAGTAGTCAACTGAAAAAATTTTGACCATTTTATCAAAAACATTTTATCAGTTGACCACTTTTTGATATCTCTTACAGTAACCGAGATAAGTTGAATCAAAGGTGGGGGGGGGGCTCCTAACAAGCTTGGCTACTGTAATCCCCACTACTCGGAAATTATGATTCTTATTTAGATTGTTGCTTCTTAACGAATATGTTGGTCCTTTTCTAATTTTTTCCTTCTCAGAAATTTGGAAAAATACTGTTTCAATTAGTTTTAAAATTTGAATTTGAAGCTAAATTTAACATTATCTCCGGTTTTTGAATAAAAATTTGAAATTTCAAAACAAAAACCTAATTTAAAATTTAAGATTTCAAAAAGTTATTAAATTCCGAATTTTATATAAA</canonical>
            <polymorphic>AAAAAGTGGTCAACTGATAAAATGATGGTGATAAAACAATAAATGTTCTCTCAGTTGACAACTTTTTGATATCTTTGACTGGTATTGAGATAAATTAGATCAAAGTTAAACCCCAACTTGTTCAAAAAAGTTTTACCGTTTTACTTATACTTTGAATTTTGAATCAGTTTTCTGTGAGTGATGAGTTCGCCAAACCATTTTCAAACAATAAGATTTCCTAGAAATTTAATGTTTCCAATTATACCAAAATTTCAAATATTTCAAAATCAGAAAAAAATTATACGATTCGGACTTAAATTCAAATATTATTTTTTTTTAGTGTAAGTCTTATCTATTCTAGTTGAGAACCCCCAAAGAAAACCGAATAGGCATACTGTATCTCTAAAAATCATCTCTATTAATTTTTCGTCACCAAAAAAACTGTATCTACTTTGGATTTTCATCCAGTTTTCGGAACAGACGTTTTATCTCGAAAGCATCTCAATGCTATATTGAAACARGGAAGTGGATTTTGATTTTTCGAACACTTTAGAATAAAATAGTGATCATTTTAAATTGCCGTTTTTGAGGATTCGAAACTTGATTTATCTCATTTCCAGTTGAAGATATCAAAAAGTAGTCAACTGAAAAAATTTTGACCATTTTATCAAAAACATTTTATCAGTTGACCACTTTTTGATATCTCTTACAGTAACCGAGATAAGTTGAATCAAAGGTGGGGGGGGGGCTCCTAACAAGCTTGGCTACTGTAATCCCCACTACTCGGAAATTATGATTCTTATTTAGATTGTTGCTTCTTAACGAATATGTTGGTCCTTTTCTAATTTTTTCCTTCTCAGAAATTTGGAAAAATACTGTTTCAATTAGTTTTAAAATTTGAATTTGAAGCTAAATTTAACATTATCTCCGGTTTTTGAATAAAAATTTGAAATTTCAAAACAAAAACCTAATTTAAAATTTAAGATTTCAAAAAGTTATTAAATTCCGAATTTTATATAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCTCTATTAATTTTTCGTCACC</pcr_primer_p1>
		<pcr_primer_p2>GAGTAGTGGGGATTACAGTAGC</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>CATCTCTATTAATTTTTCGTCACCAAAAAAACTGTATCTACTTTGGATTTTCATCCAGTTTTCGGAACAGACGTTTTATCTCGAAAGCATCTCAATGCTATATTGAAACAAGGAAGTGGATTTTGATTTTTCGAACACTTTAGAATAAAATAGTGATCATTTTAAATTGCCGTTTTTGAGGATTCGAAACTTGATTTATCTCATTTCCAGTTGAAGATATCAAAAAGTAGTCAACTGAAAAAATTTTGACCATTTTATCAAAAACATTTTATCAGTTGACCACTTTTTGATATCTCTTACAGTAACCGAGATAAGTTGAATCAAAGGTGGGGGGGGGGCTCCTAACAAGCTTGGCTACTGTAATCCCCACTACTC</canonical_amplicon>
		<polymorphic_amplicon>CATCTCTATTAATTTTTCGTCACCAAAAAAACTGTATCTACTTTGGATTTTCATCCAGTTTTCGGAACAGACGTTTTATCTCGAAAGCATCTCAATGCTATATTGAAACARGGAAGTGGATTTTGATTTTTCGAACACTTTAGAATAAAATAGTGATCATTTTAAATTGCCGTTTTTGAGGATTCGAAACTTGATTTATCTCATTTCCAGTTGAAGATATCAAAAAGTAGTCAACTGAAAAAATTTTGACCATTTTATCAAAAACATTTTATCAGTTGACCACTTTTTGATATCTCTTACAGTAACCGAGATAAGTTGAATCAAAGGTGGGGGGGGGGCTCCTAACAAGCTTGGCTACTGTAATCCCCACTACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34180</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>14697</contig_pos>
        <strand></strand>
        <context>GGATTCGAAA[C/A]TTGatttatc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTAGAATAAAATAGTGATCATTTTAAATTGCCGTTTTTGAGGATTCGAAA</left_flank>
        <right_flank>TTGATTTATCTCATTTCCAGTTGAAGATATCAAAAAGTAGTCAACTGAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTATTGAGATAAATTAGATCAAAGTTAAACCCCAACTTGTTCAAAAAAGTTTTACCGTTTTACTTATACTTTGAATTTTGAATCAGTTTTCTGTGAGTGATGAGTTCGCCAAACCATTTTCAAACAATAAGATTTCCTAGAAATTTAATGTTTCCAATTATACCAAAATTTCAAATATTTCAAAATCAGAAAAAAATTATACGATTCGGACTTAAATTCAAATATTATTTTTTTTTAGTGTAAGTCTTATCTATTCTAGTTGAGAACCCCCAAAGAAAACCGAATAGGCATACTGTATCTCTAAAAATCATCTCTATTAATTTTTCGTCACCAAAAAAACTGTATCTACTTTGGATTTTCATCCAGTTTTCGGAACAGACGTTTTATCTCGAAAGCATCTCAATGCTATATTGAAACAAGGAAGTGGATTTTGATTTTTCGAACACTTTAGAATAAAATAGTGATCATTTTAAATTGCCGTTTTTGAGGATTCGAAACTTGATTTATCTCATTTCCAGTTGAAGATATCAAAAAGTAGTCAACTGAAAAAATTTTGACCATTTTATCAAAAACATTTTATCAGTTGACCACTTTTTGATATCTCTTACAGTAACCGAGATAAGTTGAATCAAAGGTGGGGGGGGGGCTCCTAACAAGCTTGGCTACTGTAATCCCCACTACTCGGAAATTATGATTCTTATTTAGATTGTTGCTTCTTAACGAATATGTTGGTCCTTTTCTAATTTTTTCCTTCTCAGAAATTTGGAAAAATACTGTTTCAATTAGTTTTAAAATTTGAATTTGAAGCTAAATTTAACATTATCTCCGGTTTTTGAATAAAAATTTGAAATTTCAAAACAAAAACCTAATTTAAAATTTAAGATTTCAAAAAGTTATTAAATTCCGAATTTTATATAAATTTAACACTAATTGTTTTACAGTTGGTCTGAATTTTTCGAGAAAAAGAATCTTCAGAAGATTAGTGAAGGATCAAAACA</canonical>
            <polymorphic>TGGTATTGAGATAAATTAGATCAAAGTTAAACCCCAACTTGTTCAAAAAAGTTTTACCGTTTTACTTATACTTTGAATTTTGAATCAGTTTTCTGTGAGTGATGAGTTCGCCAAACCATTTTCAAACAATAAGATTTCCTAGAAATTTAATGTTTCCAATTATACCAAAATTTCAAATATTTCAAAATCAGAAAAAAATTATACGATTCGGACTTAAATTCAAATATTATTTTTTTTTAGTGTAAGTCTTATCTATTCTAGTTGAGAACCCCCAAAGAAAACCGAATAGGCATACTGTATCTCTAAAAATCATCTCTATTAATTTTTCGTCACCAAAAAAACTGTATCTACTTTGGATTTTCATCCAGTTTTCGGAACAGACGTTTTATCTCGAAAGCATCTCAATGCTATATTGAAACAAGGAAGTGGATTTTGATTTTTCGAACACTTTAGAATAAAATAGTGATCATTTTAAATTGCCGTTTTTGAGGATTCGAAAMTTGATTTATCTCATTTCCAGTTGAAGATATCAAAAAGTAGTCAACTGAAAAAATTTTGACCATTTTATCAAAAACATTTTATCAGTTGACCACTTTTTGATATCTCTTACAGTAACCGAGATAAGTTGAATCAAAGGTGGGGGGGGGGCTCCTAACAAGCTTGGCTACTGTAATCCCCACTACTCGGAAATTATGATTCTTATTTAGATTGTTGCTTCTTAACGAATATGTTGGTCCTTTTCTAATTTTTTCCTTCTCAGAAATTTGGAAAAATACTGTTTCAATTAGTTTTAAAATTTGAATTTGAAGCTAAATTTAACATTATCTCCGGTTTTTGAATAAAAATTTGAAATTTCAAAACAAAAACCTAATTTAAAATTTAAGATTTCAAAAAGTTATTAAATTCCGAATTTTATATAAATTTAACACTAATTGTTTTACAGTTGGTCTGAATTTTTCGAGAAAAAGAATCTTCAGAAGATTAGTGAAGGATCAAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATTTTTCGAACACTTTAGAAT</pcr_primer_p1>
		<pcr_primer_p2>GAGTAGTGGGGATTACAGTAGC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TGATTTTTCGAACACTTTAGAATAAAATAGTGATCATTTTAAATTGCCGTTTTTGAGGATTCGAAACTTGATTTATCTCATTTCCAGTTGAAGATATCAAAAAGTAGTCAACTGAAAAAATTTTGACCATTTTATCAAAAACATTTTATCAGTTGACCACTTTTTGATATCTCTTACAGTAACCGAGATAAGTTGAATCAAAGGTGGGGGGGGGGCTCCTAACAAGCTTGGCTACTGTAATCCCCACTACTC</canonical_amplicon>
		<polymorphic_amplicon>TGATTTTTCGAACACTTTAGAATAAAATAGTGATCATTTTAAATTGCCGTTTTTGAGGATTCGAAAMTTGATTTATCTCATTTCCAGTTGAAGATATCAAAAAGTAGTCAACTGAAAAAATTTTGACCATTTTATCAAAAACATTTTATCAGTTGACCACTTTTTGATATCTCTTACAGTAACCGAGATAAGTTGAATCAAAGGTGGGGGGGGGGCTCCTAACAAGCTTGGCTACTGTAATCCCCACTACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34181</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>24346</contig_pos>
        <strand>+</strand>
        <context>TGTTTTCTGT[A/G]ATAGAYCTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAGGATTAAATTGTTTAAATTATTTTAACTTTGAAATTTTGTTTTCTGT</left_flank>
        <right_flank>ATAGATCTCCTTATGCTTTTTTTCCTTTTTTTAACTATAAATTTGTAGAA</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTATTAATATTTCATTTGTTGGCTACTTTACTTTTGGATATCTTTTACAGAACTTGAGATAATTAAGCCTGAAACTTTCATAAAGTTTGAGTTGATTTTTCTCAATTCCTGTAAAAGATATAAAAAAGTGATCAACTGATAAAATGTGTAACATTTTATGATAAACATTTTATCAGTTGATCACTTTTTGATATCTTTCACAGAAAATGAGATATATAAGAGTTAAAGTTTTTACGTTATCTCAATTCCTGTAAAATACATTTGAAAAAATTTCAACTAGCAAAATGATCAAAATTGTCTCTTTTCGTTTCAGATACAATTTCCGAATTTTCAATGTGGACCCAAATCCCTATTGTATCGAATGCTCCGAGTACAGTTTGATCCATGACAGCTGTATGGATCAGTACGGTGTCGTCCCATTGACACCGATAATTCCAAGAAGTGAATATTAGGATTAAATTGTTTAAATTATTTTAACTTTGAAATTTTGTTTTCTGTGATAGATCTCCTTATGCTTTTTTTCCTTTTTTTAACTATAAATTTGTAGAATTTCCATACAAAAACGGAATGTTTCAACTCCTCCATGTGTGATTCCTCTGATTTTTGAGAATTCGGTTTATCTAAAAAGAGTGATATCTCAAAAACTAAAACTGCTATCAAAAATGTGTCAACTACAAAAATGTTGAAAACACTATTTCCCATATTTCCAAAGATGACAACTTTTTCTAGCTACTGTAGTTTTCAAGATTAGATCTCGCATTGTACTGTCCATTTTTAGCGCTCCTGGAAAATTCTGGAAACTTTGGCATGTAAAAGACTTATTTCAAAAAACGTTTTCGTCAATCAGTCCAATAAAACTTTTTTCGAAGTTTCATGAAAAGCCATTTTTTCAAAGACTATGAATTAAAAATGCAGTATTTCACTTTTTTCCGGTTTCATCAAAGTAAAAAAAAGAATTTTTCTCAAAACGTTAACGGTCTCGTATTTCAATACCCAGCG</canonical>
            <polymorphic>ATTATTAATATTTCATTTGTTGGCTACTTTACTTTTGGATATCTTTTACAGAACTTGAGATAATTAAGCCTGAAACTTTCATAAAGTTTGAGTTGATTTTTCTCAATTCCTGTAAAAGATATAAAAAAGTGATCAACTGATAAAATGTGTAACATTTTATGATAAACATTTTATCAGTTGATCACTTTTTGATATCTTTCACAGAAAATGAGATATATAAGAGTTAAAGTTTTTACGTTATCTCAATTCCTGTAAAATACATTTGAAAAAATTTCAACTAGCAAAATGATCAAAATTGTCTCTTTTCGTTTCAGATACAATTTCCGAATTTTCAATGTGGACCCAAATCCCTATTGTATCGAATGCTCCGAGTACAGTTTGATCCATGACAGCTGTATGGATCAGTACGGTGTCGTCCCATTGACACCGATAATTCCAAGAAGTGAATATTAGGATTAAATTGTTTAAATTATTTTAACTTTGAAATTTTGTTTTCTGTRATAGATCTCCTTATGCTTTTTTTCCTTTTTTTAACTATAAATTTGTAGAATTTCCATACAAAAACGGAATGTTTCAACTCCTCCATGTGTGATTCCTCTGATTTTTGAGAATTCGGTTTATCTAAAAAGAGTGATATCTCAAAAACTAAAACTGCTATCAAAAATGTGTCAACTACAAAAATGTTGAAAACACTATTTCCCATATTTCCAAAGATGACAACTTTTTCTAGCTACTGTAGTTTTCAAGATTAGATCTCGCATTGTACTGTCCATTTTTAGCGCTCCTGGAAAATTCTGGAAACTTTGGCATGTAAAAGACTTATTTCAAAAAACGTTTTCGTCAATCAGTCCAATAAAACTTTTTTCGAAGTTTCATGAAAAGCCATTTTTTCAAAGACTATGAATTAAAAATGCAGTATTTCACTTTTTTCCGGTTTCATCAAAGTAAAAAAAAGAATTTTTCTCAAAACGTTAACGGTCTCGTATTTCAATACCCAGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>231 138 131 89 77 73 55 42 35 35 24 19 18 17 14 2</canonical_bands>
                <polymorphic_bands>231 144 138 131 77 73 42 35 35 24 19 18 17 14 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTACAGTTTGATCCATGACAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAATCAGAGGAATCACACAT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GAGTACAGTTTGATCCATGACAGCTGTATGGATCAGTACGGTGTCGTCCCATTGACACCGATAATTCCAAGAAGTGAATATTAGGATTAAATTGTTTAAATTATTTTAACTTTGAAATTTTGTTTTCTGTGATAGATCTCCTTATGCTTTTTTTCCTTTTTTTAACTATAAATTTGTAGAATTTCCATACAAAAACGGAATGTTTCAACTCCTCCATGTGTGATTCCTCTGATTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAGTACAGTTTGATCCATGACAGCTGTATGGATCAGTACGGTGTCGTCCCATTGACACCGATAATTCCAAGAAGTGAATATTAGGATTAAATTGTTTAAATTATTTTAACTTTGAAATTTTGTTTTCTGTRATAGATCTCCTTATGCTTTTTTTCCTTTTTTTAACTATAAATTTGTAGAATTTCCATACAAAAACGGAATGTTTCAACTCCTCCATGTGTGATTCCTCTGATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34182</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>24352</contig_pos>
        <strand>+</strand>
        <context>CTGTRATAGA[C/T]CTCCTTATGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAATTGTTTAAATTATTTTAACTTTGAAATTTTGTTTTCTGTGATAGA</left_flank>
        <right_flank>CTCCTTATGCTTTTTTTCCTTTTTTTAACTATAAATTTGTAGAATTTCCA</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATATTTCATTTGTTGGCTACTTTACTTTTGGATATCTTTTACAGAACTTGAGATAATTAAGCCTGAAACTTTCATAAAGTTTGAGTTGATTTTTCTCAATTCCTGTAAAAGATATAAAAAAGTGATCAACTGATAAAATGTGTAACATTTTATGATAAACATTTTATCAGTTGATCACTTTTTGATATCTTTCACAGAAAATGAGATATATAAGAGTTAAAGTTTTTACGTTATCTCAATTCCTGTAAAATACATTTGAAAAAATTTCAACTAGCAAAATGATCAAAATTGTCTCTTTTCGTTTCAGATACAATTTCCGAATTTTCAATGTGGACCCAAATCCCTATTGTATCGAATGCTCCGAGTACAGTTTGATCCATGACAGCTGTATGGATCAGTACGGTGTCGTCCCATTGACACCGATAATTCCAAGAAGTGAATATTAGGATTAAATTGTTTAAATTATTTTAACTTTGAAATTTTGTTTTCTGTGATAGATCTCCTTATGCTTTTTTTCCTTTTTTTAACTATAAATTTGTAGAATTTCCATACAAAAACGGAATGTTTCAACTCCTCCATGTGTGATTCCTCTGATTTTTGAGAATTCGGTTTATCTAAAAAGAGTGATATCTCAAAAACTAAAACTGCTATCAAAAATGTGTCAACTACAAAAATGTTGAAAACACTATTTCCCATATTTCCAAAGATGACAACTTTTTCTAGCTACTGTAGTTTTCAAGATTAGATCTCGCATTGTACTGTCCATTTTTAGCGCTCCTGGAAAATTCTGGAAACTTTGGCATGTAAAAGACTTATTTCAAAAAACGTTTTCGTCAATCAGTCCAATAAAACTTTTTTCGAAGTTTCATGAAAAGCCATTTTTTCAAAGACTATGAATTAAAAATGCAGTATTTCACTTTTTTCCGGTTTCATCAAAGTAAAAAAAAGAATTTTTCTCAAAACGTTAACGGTCTCGTATTTCAATACCCAGCGTAAAAA</canonical>
            <polymorphic>AATATTTCATTTGTTGGCTACTTTACTTTTGGATATCTTTTACAGAACTTGAGATAATTAAGCCTGAAACTTTCATAAAGTTTGAGTTGATTTTTCTCAATTCCTGTAAAAGATATAAAAAAGTGATCAACTGATAAAATGTGTAACATTTTATGATAAACATTTTATCAGTTGATCACTTTTTGATATCTTTCACAGAAAATGAGATATATAAGAGTTAAAGTTTTTACGTTATCTCAATTCCTGTAAAATACATTTGAAAAAATTTCAACTAGCAAAATGATCAAAATTGTCTCTTTTCGTTTCAGATACAATTTCCGAATTTTCAATGTGGACCCAAATCCCTATTGTATCGAATGCTCCGAGTACAGTTTGATCCATGACAGCTGTATGGATCAGTACGGTGTCGTCCCATTGACACCGATAATTCCAAGAAGTGAATATTAGGATTAAATTGTTTAAATTATTTTAACTTTGAAATTTTGTTTTCTGTGATAGAYCTCCTTATGCTTTTTTTCCTTTTTTTAACTATAAATTTGTAGAATTTCCATACAAAAACGGAATGTTTCAACTCCTCCATGTGTGATTCCTCTGATTTTTGAGAATTCGGTTTATCTAAAAAGAGTGATATCTCAAAAACTAAAACTGCTATCAAAAATGTGTCAACTACAAAAATGTTGAAAACACTATTTCCCATATTTCCAAAGATGACAACTTTTTCTAGCTACTGTAGTTTTCAAGATTAGATCTCGCATTGTACTGTCCATTTTTAGCGCTCCTGGAAAATTCTGGAAACTTTGGCATGTAAAAGACTTATTTCAAAAAACGTTTTCGTCAATCAGTCCAATAAAACTTTTTTCGAAGTTTCATGAAAAGCCATTTTTTCAAAGACTATGAATTAAAAATGCAGTATTTCACTTTTTTCCGGTTTCATCAAAGTAAAAAAAAGAATTTTTCTCAAAACGTTAACGGTCTCGTATTTCAATACCCAGCGTAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>255 248 124 108 104 93 49 19</canonical_bands>
                <polymorphic_bands>352 255 124 108 93 49 19</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>497 255 248</canonical_bands>
                <polymorphic_bands>745 255</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>497 255 248</canonical_bands>
                <polymorphic_bands>745 255</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTACAGTTTGATCCATGACAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAATCAGAGGAATCACACAT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GAGTACAGTTTGATCCATGACAGCTGTATGGATCAGTACGGTGTCGTCCCATTGACACCGATAATTCCAAGAAGTGAATATTAGGATTAAATTGTTTAAATTATTTTAACTTTGAAATTTTGTTTTCTGTGATAGATCTCCTTATGCTTTTTTTCCTTTTTTTAACTATAAATTTGTAGAATTTCCATACAAAAACGGAATGTTTCAACTCCTCCATGTGTGATTCCTCTGATTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAGTACAGTTTGATCCATGACAGCTGTATGGATCAGTACGGTGTCGTCCCATTGACACCGATAATTCCAAGAAGTGAATATTAGGATTAAATTGTTTAAATTATTTTAACTTTGAAATTTTGTTTTCTGTGATAGAYCTCCTTATGCTTTTTTTCCTTTTTTTAACTATAAATTTGTAGAATTTCCATACAAAAACGGAATGTTTCAACTCCTCCATGTGTGATTCCTCTGATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34183</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>24363</contig_pos>
        <strand>+</strand>
        <context>CTCCTTATGC[A/T]TTTTTTCCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATTATTTTAACTTTGAAATTTTGTTTTCTGTGATAGATCTCCTTATGC</left_flank>
        <right_flank>TTTTTTCCTTTTTTTAACTATAAATTTGTAGAATTTCCATACAAAAACGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTGGCTACTTTACTTTTGGATATCTTTTACAGAACTTGAGATAATTAAGCCTGAAACTTTCATAAAGTTTGAGTTGATTTTTCTCAATTCCTGTAAAAGATATAAAAAAGTGATCAACTGATAAAATGTGTAACATTTTATGATAAACATTTTATCAGTTGATCACTTTTTGATATCTTTCACAGAAAATGAGATATATAAGAGTTAAAGTTTTTACGTTATCTCAATTCCTGTAAAATACATTTGAAAAAATTTCAACTAGCAAAATGATCAAAATTGTCTCTTTTCGTTTCAGATACAATTTCCGAATTTTCAATGTGGACCCAAATCCCTATTGTATCGAATGCTCCGAGTACAGTTTGATCCATGACAGCTGTATGGATCAGTACGGTGTCGTCCCATTGACACCGATAATTCCAAGAAGTGAATATTAGGATTAAATTGTTTAAATTATTTTAACTTTGAAATTTTGTTTTCTGTGATAGATCTCCTTATGCTTTTTTTCCTTTTTTTAACTATAAATTTGTAGAATTTCCATACAAAAACGGAATGTTTCAACTCCTCCATGTGTGATTCCTCTGATTTTTGAGAATTCGGTTTATCTAAAAAGAGTGATATCTCAAAAACTAAAACTGCTATCAAAAATGTGTCAACTACAAAAATGTTGAAAACACTATTTCCCATATTTCCAAAGATGACAACTTTTTCTAGCTACTGTAGTTTTCAAGATTAGATCTCGCATTGTACTGTCCATTTTTAGCGCTCCTGGAAAATTCTGGAAACTTTGGCATGTAAAAGACTTATTTCAAAAAACGTTTTCGTCAATCAGTCCAATAAAACTTTTTTCGAAGTTTCATGAAAAGCCATTTTTTCAAAGACTATGAATTAAAAATGCAGTATTTCACTTTTTTCCGGTTTCATCAAAGTAAAAAAAAGAATTTTTCTCAAAACGTTAACGGTCTCGTATTTCAATACCCAGCGTAAAAATCTTTATCAAC</canonical>
            <polymorphic>TGTTGGCTACTTTACTTTTGGATATCTTTTACAGAACTTGAGATAATTAAGCCTGAAACTTTCATAAAGTTTGAGTTGATTTTTCTCAATTCCTGTAAAAGATATAAAAAAGTGATCAACTGATAAAATGTGTAACATTTTATGATAAACATTTTATCAGTTGATCACTTTTTGATATCTTTCACAGAAAATGAGATATATAAGAGTTAAAGTTTTTACGTTATCTCAATTCCTGTAAAATACATTTGAAAAAATTTCAACTAGCAAAATGATCAAAATTGTCTCTTTTCGTTTCAGATACAATTTCCGAATTTTCAATGTGGACCCAAATCCCTATTGTATCGAATGCTCCGAGTACAGTTTGATCCATGACAGCTGTATGGATCAGTACGGTGTCGTCCCATTGACACCGATAATTCCAAGAAGTGAATATTAGGATTAAATTGTTTAAATTATTTTAACTTTGAAATTTTGTTTTCTGTGATAGATCTCCTTATGCWTTTTTTCCTTTTTTTAACTATAAATTTGTAGAATTTCCATACAAAAACGGAATGTTTCAACTCCTCCATGTGTGATTCCTCTGATTTTTGAGAATTCGGTTTATCTAAAAAGAGTGATATCTCAAAAACTAAAACTGCTATCAAAAATGTGTCAACTACAAAAATGTTGAAAACACTATTTCCCATATTTCCAAAGATGACAACTTTTTCTAGCTACTGTAGTTTTCAAGATTAGATCTCGCATTGTACTGTCCATTTTTAGCGCTCCTGGAAAATTCTGGAAACTTTGGCATGTAAAAGACTTATTTCAAAAAACGTTTTCGTCAATCAGTCCAATAAAACTTTTTTCGAAGTTTCATGAAAAGCCATTTTTTCAAAGACTATGAATTAAAAATGCAGTATTTCACTTTTTTCCGGTTTCATCAAAGTAAAAAAAAGAATTTTTCTCAAAACGTTAACGGTCTCGTATTTCAATACCCAGCGTAAAAATCTTTATCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTACAGTTTGATCCATGACAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAATCAGAGGAATCACACAT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GAGTACAGTTTGATCCATGACAGCTGTATGGATCAGTACGGTGTCGTCCCATTGACACCGATAATTCCAAGAAGTGAATATTAGGATTAAATTGTTTAAATTATTTTAACTTTGAAATTTTGTTTTCTGTGATAGATCTCCTTATGCTTTTTTTCCTTTTTTTAACTATAAATTTGTAGAATTTCCATACAAAAACGGAATGTTTCAACTCCTCCATGTGTGATTCCTCTGATTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAGTACAGTTTGATCCATGACAGCTGTATGGATCAGTACGGTGTCGTCCCATTGACACCGATAATTCCAAGAAGTGAATATTAGGATTAAATTGTTTAAATTATTTTAACTTTGAAATTTTGTTTTCTGTGATAGATCTCCTTATGCWTTTTTTCCTTTTTTTAACTATAAATTTGTAGAATTTCCATACAAAAACGGAATGTTTCAACTCCTCCATGTGTGATTCCTCTGATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34184</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>24454</contig_pos>
        <strand>+</strand>
        <context>CTGATTTTTG[A/G]GAATTCGGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAAAAACGGAATGTTTCAACTCCTCCATGTGTGATTCCTCTGATTTTTG</left_flank>
        <right_flank>GAATTCGGTTTATCTAAAAAGAGTGATATCTCAAAAACTAAAACTGCTAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGTAAAAGATATAAAAAAGTGATCAACTGATAAAATGTGTAACATTTTATGATAAACATTTTATCAGTTGATCACTTTTTGATATCTTTCACAGAAAATGAGATATATAAGAGTTAAAGTTTTTACGTTATCTCAATTCCTGTAAAATACATTTGAAAAAATTTCAACTAGCAAAATGATCAAAATTGTCTCTTTTCGTTTCAGATACAATTTCCGAATTTTCAATGTGGACCCAAATCCCTATTGTATCGAATGCTCCGAGTACAGTTTGATCCATGACAGCTGTATGGATCAGTACGGTGTCGTCCCATTGACACCGATAATTCCAAGAAGTGAATATTAGGATTAAATTGTTTAAATTATTTTAACTTTGAAATTTTGTTTTCTGTGATAGATCTCCTTATGCTTTTTTTCCTTTTTTTAACTATAAATTTGTAGAATTTCCATACAAAAACGGAATGTTTCAACTCCTCCATGTGTGATTCCTCTGATTTTTGAGAATTCGGTTTATCTAAAAAGAGTGATATCTCAAAAACTAAAACTGCTATCAAAAATGTGTCAACTACAAAAATGTTGAAAACACTATTTCCCATATTTCCAAAGATGACAACTTTTTCTAGCTACTGTAGTTTTCAAGATTAGATCTCGCATTGTACTGTCCATTTTTAGCGCTCCTGGAAAATTCTGGAAACTTTGGCATGTAAAAGACTTATTTCAAAAAACGTTTTCGTCAATCAGTCCAATAAAACTTTTTTCGAAGTTTCATGAAAAGCCATTTTTTCAAAGACTATGAATTAAAAATGCAGTATTTCACTTTTTTCCGGTTTCATCAAAGTAAAAAAAAGAATTTTTCTCAAAACGTTAACGGTCTCGTATTTCAATACCCAGCGTAAAAATCTTTATCAACTTTATGTGAAGTCCTGTATCTCGGTTCCTGTGAATTATATCAAAAAGTGGTCAACTAATAAAATGTGTGAAATTTTATGTTAAAGGTGGGG</canonical>
            <polymorphic>CCTGTAAAAGATATAAAAAAGTGATCAACTGATAAAATGTGTAACATTTTATGATAAACATTTTATCAGTTGATCACTTTTTGATATCTTTCACAGAAAATGAGATATATAAGAGTTAAAGTTTTTACGTTATCTCAATTCCTGTAAAATACATTTGAAAAAATTTCAACTAGCAAAATGATCAAAATTGTCTCTTTTCGTTTCAGATACAATTTCCGAATTTTCAATGTGGACCCAAATCCCTATTGTATCGAATGCTCCGAGTACAGTTTGATCCATGACAGCTGTATGGATCAGTACGGTGTCGTCCCATTGACACCGATAATTCCAAGAAGTGAATATTAGGATTAAATTGTTTAAATTATTTTAACTTTGAAATTTTGTTTTCTGTGATAGATCTCCTTATGCTTTTTTTCCTTTTTTTAACTATAAATTTGTAGAATTTCCATACAAAAACGGAATGTTTCAACTCCTCCATGTGTGATTCCTCTGATTTTTGRGAATTCGGTTTATCTAAAAAGAGTGATATCTCAAAAACTAAAACTGCTATCAAAAATGTGTCAACTACAAAAATGTTGAAAACACTATTTCCCATATTTCCAAAGATGACAACTTTTTCTAGCTACTGTAGTTTTCAAGATTAGATCTCGCATTGTACTGTCCATTTTTAGCGCTCCTGGAAAATTCTGGAAACTTTGGCATGTAAAAGACTTATTTCAAAAAACGTTTTCGTCAATCAGTCCAATAAAACTTTTTTCGAAGTTTCATGAAAAGCCATTTTTTCAAAGACTATGAATTAAAAATGCAGTATTTCACTTTTTTCCGGTTTCATCAAAGTAAAAAAAAGAATTTTTCTCAAAACGTTAACGGTCTCGTATTTCAATACCCAGCGTAAAAATCTTTATCAACTTTATGTGAAGTCCTGTATCTCGGTTCCTGTGAATTATATCAAAAAGTGGTCAACTAATAAAATGTGTGAAATTTTATGTTAAAGGTGGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATACAAAAACGGAATGTTTC</pcr_primer_p1>
		<pcr_primer_p2>CGCTAAAAATGGACAGTACAA</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>CATACAAAAACGGAATGTTTCAACTCCTCCATGTGTGATTCCTCTGATTTTTGAGAATTCGGTTTATCTAAAAAGAGTGATATCTCAAAAACTAAAACTGCTATCAAAAATGTGTCAACTACAAAAATGTTGAAAACACTATTTCCCATATTTCCAAAGATGACAACTTTTTCTAGCTACTGTAGTTTTCAAGATTAGATCTCGCATTGTACTGTCCATTTTTAGCG</canonical_amplicon>
		<polymorphic_amplicon>CATACAAAAACGGAATGTTTCAACTCCTCCATGTGTGATTCCTCTGATTTTTGRGAATTCGGTTTATCTAAAAAGAGTGATATCTCAAAAACTAAAACTGCTATCAAAAATGTGTCAACTACAAAAATGTTGAAAACACTATTTCCCATATTTCCAAAGATGACAACTTTTTCTAGCTACTGTAGTTTTCAAGATTAGATCTCGCATTGTACTGTCCATTTTTAGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34185</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>24554</contig_pos>
        <strand></strand>
        <context>tcccatattt[C/T]caaagatgac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAAAAATGTGTCAACTACAAAAATGTTGAAAACACTATTTCCCATATTT</left_flank>
        <right_flank>CAAAGATGACAACTTTTTCTAGCTACTGTAGTTTTCAAGATTAGATCTCG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGATATATAAGAGTTAAAGTTTTTACGTTATCTCAATTCCTGTAAAATACATTTGAAAAAATTTCAACTAGCAAAATGATCAAAATTGTCTCTTTTCGTTTCAGATACAATTTCCGAATTTTCAATGTGGACCCAAATCCCTATTGTATCGAATGCTCCGAGTACAGTTTGATCCATGACAGCTGTATGGATCAGTACGGTGTCGTCCCATTGACACCGATAATTCCAAGAAGTGAATATTAGGATTAAATTGTTTAAATTATTTTAACTTTGAAATTTTGTTTTCTGTGATAGATCTCCTTATGCTTTTTTTCCTTTTTTTAACTATAAATTTGTAGAATTTCCATACAAAAACGGAATGTTTCAACTCCTCCATGTGTGATTCCTCTGATTTTTGAGAATTCGGTTTATCTAAAAAGAGTGATATCTCAAAAACTAAAACTGCTATCAAAAATGTGTCAACTACAAAAATGTTGAAAACACTATTTCCCATATTTCCAAAGATGACAACTTTTTCTAGCTACTGTAGTTTTCAAGATTAGATCTCGCATTGTACTGTCCATTTTTAGCGCTCCTGGAAAATTCTGGAAACTTTGGCATGTAAAAGACTTATTTCAAAAAACGTTTTCGTCAATCAGTCCAATAAAACTTTTTTCGAAGTTTCATGAAAAGCCATTTTTTCAAAGACTATGAATTAAAAATGCAGTATTTCACTTTTTTCCGGTTTCATCAAAGTAAAAAAAAGAATTTTTCTCAAAACGTTAACGGTCTCGTATTTCAATACCCAGCGTAAAAATCTTTATCAACTTTATGTGAAGTCCTGTATCTCGGTTCCTGTGAATTATATCAAAAAGTGGTCAACTAATAAAATGTGTGAAATTTTATGTTAAAGGTGGGGGGACATGAAAAAAATAATTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGA</canonical>
            <polymorphic>TGAGATATATAAGAGTTAAAGTTTTTACGTTATCTCAATTCCTGTAAAATACATTTGAAAAAATTTCAACTAGCAAAATGATCAAAATTGTCTCTTTTCGTTTCAGATACAATTTCCGAATTTTCAATGTGGACCCAAATCCCTATTGTATCGAATGCTCCGAGTACAGTTTGATCCATGACAGCTGTATGGATCAGTACGGTGTCGTCCCATTGACACCGATAATTCCAAGAAGTGAATATTAGGATTAAATTGTTTAAATTATTTTAACTTTGAAATTTTGTTTTCTGTGATAGATCTCCTTATGCTTTTTTTCCTTTTTTTAACTATAAATTTGTAGAATTTCCATACAAAAACGGAATGTTTCAACTCCTCCATGTGTGATTCCTCTGATTTTTGAGAATTCGGTTTATCTAAAAAGAGTGATATCTCAAAAACTAAAACTGCTATCAAAAATGTGTCAACTACAAAAATGTTGAAAACACTATTTCCCATATTTYCAAAGATGACAACTTTTTCTAGCTACTGTAGTTTTCAAGATTAGATCTCGCATTGTACTGTCCATTTTTAGCGCTCCTGGAAAATTCTGGAAACTTTGGCATGTAAAAGACTTATTTCAAAAAACGTTTTCGTCAATCAGTCCAATAAAACTTTTTTCGAAGTTTCATGAAAAGCCATTTTTTCAAAGACTATGAATTAAAAATGCAGTATTTCACTTTTTTCCGGTTTCATCAAAGTAAAAAAAAGAATTTTTCTCAAAACGTTAACGGTCTCGTATTTCAATACCCAGCGTAAAAATCTTTATCAACTTTATGTGAAGTCCTGTATCTCGGTTCCTGTGAATTATATCAAAAAGTGGTCAACTAATAAAATGTGTGAAATTTTATGTTAAAGGTGGGGGGACATGAAAAAAATAATTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTCAACTCCTCCATGTGT</pcr_primer_p1>
		<pcr_primer_p2>GTCTTTTACATGCCAAAGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTTCAACTCCTCCATGTGTGATTCCTCTGATTTTTGAGAATTCGGTTTATCTAAAAAGAGTGATATCTCAAAAACTAAAACTGCTATCAAAAATGTGTCAACTACAAAAATGTTGAAAACACTATTTCCCATATTTCCAAAGATGACAACTTTTTCTAGCTACTGTAGTTTTCAAGATTAGATCTCGCATTGTACTGTCCATTTTTAGCGCTCCTGGAAAATTCTGGAAACTTTGGCATGTAAAAGAC</canonical_amplicon>
		<polymorphic_amplicon>GTTTCAACTCCTCCATGTGTGATTCCTCTGATTTTTGAGAATTCGGTTTATCTAAAAAGAGTGATATCTCAAAAACTAAAACTGCTATCAAAAATGTGTCAACTACAAAAATGTTGAAAACACTATTTCCCATATTTYCAAAGATGACAACTTTTTCTAGCTACTGTAGTTTTCAAGATTAGATCTCGCATTGTACTGTCCATTTTTAGCGCTCCTGGAAAATTCTGGAAACTTTGGCATGTAAAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34186</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>24581</contig_pos>
        <strand></strand>
        <context>ttctagctac[T/C]gtagttttca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGAAAACACTATTTCCCATATTTCCAAAGATGACAACTTTTTCTAGCTAC</left_flank>
        <right_flank>GTAGTTTTCAAGATTAGATCTCGCATTGTACTGTCCATTTTTAGCGCTCC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTATCTCAATTCCTGTAAAATACATTTGAAAAAATTTCAACTAGCAAAATGATCAAAATTGTCTCTTTTCGTTTCAGATACAATTTCCGAATTTTCAATGTGGACCCAAATCCCTATTGTATCGAATGCTCCGAGTACAGTTTGATCCATGACAGCTGTATGGATCAGTACGGTGTCGTCCCATTGACACCGATAATTCCAAGAAGTGAATATTAGGATTAAATTGTTTAAATTATTTTAACTTTGAAATTTTGTTTTCTGTGATAGATCTCCTTATGCTTTTTTTCCTTTTTTTAACTATAAATTTGTAGAATTTCCATACAAAAACGGAATGTTTCAACTCCTCCATGTGTGATTCCTCTGATTTTTGAGAATTCGGTTTATCTAAAAAGAGTGATATCTCAAAAACTAAAACTGCTATCAAAAATGTGTCAACTACAAAAATGTTGAAAACACTATTTCCCATATTTCCAAAGATGACAACTTTTTCTAGCTACTGTAGTTTTCAAGATTAGATCTCGCATTGTACTGTCCATTTTTAGCGCTCCTGGAAAATTCTGGAAACTTTGGCATGTAAAAGACTTATTTCAAAAAACGTTTTCGTCAATCAGTCCAATAAAACTTTTTTCGAAGTTTCATGAAAAGCCATTTTTTCAAAGACTATGAATTAAAAATGCAGTATTTCACTTTTTTCCGGTTTCATCAAAGTAAAAAAAAGAATTTTTCTCAAAACGTTAACGGTCTCGTATTTCAATACCCAGCGTAAAAATCTTTATCAACTTTATGTGAAGTCCTGTATCTCGGTTCCTGTGAATTATATCAAAAAGTGGTCAACTAATAAAATGTGTGAAATTTTATGTTAAAGGTGGGGGGACATGAAAAAAATAATTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCG</canonical>
            <polymorphic>CGTTATCTCAATTCCTGTAAAATACATTTGAAAAAATTTCAACTAGCAAAATGATCAAAATTGTCTCTTTTCGTTTCAGATACAATTTCCGAATTTTCAATGTGGACCCAAATCCCTATTGTATCGAATGCTCCGAGTACAGTTTGATCCATGACAGCTGTATGGATCAGTACGGTGTCGTCCCATTGACACCGATAATTCCAAGAAGTGAATATTAGGATTAAATTGTTTAAATTATTTTAACTTTGAAATTTTGTTTTCTGTGATAGATCTCCTTATGCTTTTTTTCCTTTTTTTAACTATAAATTTGTAGAATTTCCATACAAAAACGGAATGTTTCAACTCCTCCATGTGTGATTCCTCTGATTTTTGAGAATTCGGTTTATCTAAAAAGAGTGATATCTCAAAAACTAAAACTGCTATCAAAAATGTGTCAACTACAAAAATGTTGAAAACACTATTTCCCATATTTCCAAAGATGACAACTTTTTCTAGCTACYGTAGTTTTCAAGATTAGATCTCGCATTGTACTGTCCATTTTTAGCGCTCCTGGAAAATTCTGGAAACTTTGGCATGTAAAAGACTTATTTCAAAAAACGTTTTCGTCAATCAGTCCAATAAAACTTTTTTCGAAGTTTCATGAAAAGCCATTTTTTCAAAGACTATGAATTAAAAATGCAGTATTTCACTTTTTTCCGGTTTCATCAAAGTAAAAAAAAGAATTTTTCTCAAAACGTTAACGGTCTCGTATTTCAATACCCAGCGTAAAAATCTTTATCAACTTTATGTGAAGTCCTGTATCTCGGTTCCTGTGAATTATATCAAAAAGTGGTCAACTAATAAAATGTGTGAAATTTTATGTTAAAGGTGGGGGGACATGAAAAAAATAATTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTCAACTCCTCCATGTGT</pcr_primer_p1>
		<pcr_primer_p2>GTCTTTTACATGCCAAAGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTTCAACTCCTCCATGTGTGATTCCTCTGATTTTTGAGAATTCGGTTTATCTAAAAAGAGTGATATCTCAAAAACTAAAACTGCTATCAAAAATGTGTCAACTACAAAAATGTTGAAAACACTATTTCCCATATTTCCAAAGATGACAACTTTTTCTAGCTACTGTAGTTTTCAAGATTAGATCTCGCATTGTACTGTCCATTTTTAGCGCTCCTGGAAAATTCTGGAAACTTTGGCATGTAAAAGAC</canonical_amplicon>
		<polymorphic_amplicon>GTTTCAACTCCTCCATGTGTGATTCCTCTGATTTTTGAGAATTCGGTTTATCTAAAAAGAGTGATATCTCAAAAACTAAAACTGCTATCAAAAATGTGTCAACTACAAAAATGTTGAAAACACTATTTCCCATATTTCCAAAGATGACAACTTTTTCTAGCTACYGTAGTTTTCAAGATTAGATCTCGCATTGTACTGTCCATTTTTAGCGCTCCTGGAAAATTCTGGAAACTTTGGCATGTAAAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34187</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>24705</contig_pos>
        <strand>+</strand>
        <context>TCCAATAAAA[A/C]TTTTTTCGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGTAAAAGACTTATTTCAAAAAACGTTTTCGTCAATCAGTCCAATAAAA</left_flank>
        <right_flank>TTTTTTCGAAGTTTCATGAAAAGCCATTTTTTCAAAGACTATGAATTAAA</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAATGCTCCGAGTACAGTTTGATCCATGACAGCTGTATGGATCAGTACGGTGTCGTCCCATTGACACCGATAATTCCAAGAAGTGAATATTAGGATTAAATTGTTTAAATTATTTTAACTTTGAAATTTTGTTTTCTGTGATAGATCTCCTTATGCTTTTTTTCCTTTTTTTAACTATAAATTTGTAGAATTTCCATACAAAAACGGAATGTTTCAACTCCTCCATGTGTGATTCCTCTGATTTTTGAGAATTCGGTTTATCTAAAAAGAGTGATATCTCAAAAACTAAAACTGCTATCAAAAATGTGTCAACTACAAAAATGTTGAAAACACTATTTCCCATATTTCCAAAGATGACAACTTTTTCTAGCTACTGTAGTTTTCAAGATTAGATCTCGCATTGTACTGTCCATTTTTAGCGCTCCTGGAAAATTCTGGAAACTTTGGCATGTAAAAGACTTATTTCAAAAAACGTTTTCGTCAATCAGTCCAATAAAACTTTTTTCGAAGTTTCATGAAAAGCCATTTTTTCAAAGACTATGAATTAAAAATGCAGTATTTCACTTTTTTCCGGTTTCATCAAAGTAAAAAAAAGAATTTTTCTCAAAACGTTAACGGTCTCGTATTTCAATACCCAGCGTAAAAATCTTTATCAACTTTATGTGAAGTCCTGTATCTCGGTTCCTGTGAATTATATCAAAAAGTGGTCAACTAATAAAATGTGTGAAATTTTATGTTAAAGGTGGGGGGACATGAAAAAAATAATTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGAATACTCTTGCTACAAAAAAACTACGAAAAATCTCCTGTCC</canonical>
            <polymorphic>CGAATGCTCCGAGTACAGTTTGATCCATGACAGCTGTATGGATCAGTACGGTGTCGTCCCATTGACACCGATAATTCCAAGAAGTGAATATTAGGATTAAATTGTTTAAATTATTTTAACTTTGAAATTTTGTTTTCTGTGATAGATCTCCTTATGCTTTTTTTCCTTTTTTTAACTATAAATTTGTAGAATTTCCATACAAAAACGGAATGTTTCAACTCCTCCATGTGTGATTCCTCTGATTTTTGAGAATTCGGTTTATCTAAAAAGAGTGATATCTCAAAAACTAAAACTGCTATCAAAAATGTGTCAACTACAAAAATGTTGAAAACACTATTTCCCATATTTCCAAAGATGACAACTTTTTCTAGCTACTGTAGTTTTCAAGATTAGATCTCGCATTGTACTGTCCATTTTTAGCGCTCCTGGAAAATTCTGGAAACTTTGGCATGTAAAAGACTTATTTCAAAAAACGTTTTCGTCAATCAGTCCAATAAAAMTTTTTTCGAAGTTTCATGAAAAGCCATTTTTTCAAAGACTATGAATTAAAAATGCAGTATTTCACTTTTTTCCGGTTTCATCAAAGTAAAAAAAAGAATTTTTCTCAAAACGTTAACGGTCTCGTATTTCAATACCCAGCGTAAAAATCTTTATCAACTTTATGTGAAGTCCTGTATCTCGGTTCCTGTGAATTATATCAAAAAGTGGTCAACTAATAAAATGTGTGAAATTTTATGTTAAAGGTGGGGGGACATGAAAAAAATAATTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGAATACTCTTGCTACAAAAAAACTACGAAAAATCTCCTGTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCTCGCATTGTACTGTCC</pcr_primer_p1>
		<pcr_primer_p2>GAGACCGTTAACGTTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>GATCTCGCATTGTACTGTCCATTTTTAGCGCTCCTGGAAAATTCTGGAAACTTTGGCATGTAAAAGACTTATTTCAAAAAACGTTTTCGTCAATCAGTCCAATAAAACTTTTTTCGAAGTTTCATGAAAAGCCATTTTTTCAAAGACTATGAATTAAAAATGCAGTATTTCACTTTTTTCCGGTTTCATCAAAGTAAAAAAAAGAATTTTTCTCAAAACGTTAACGGTCTC</canonical_amplicon>
		<polymorphic_amplicon>GATCTCGCATTGTACTGTCCATTTTTAGCGCTCCTGGAAAATTCTGGAAACTTTGGCATGTAAAAGACTTATTTCAAAAAACGTTTTCGTCAATCAGTCCAATAAAAMTTTTTTCGAAGTTTCATGAAAAGCCATTTTTTCAAAGACTATGAATTAAAAATGCAGTATTTCACTTTTTTCCGGTTTCATCAAAGTAAAAAAAAGAATTTTTCTCAAAACGTTAACGGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34188</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>24840</contig_pos>
        <strand>+</strand>
        <context>TATTTCAATA[A/C]CCAGCGTAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTAAAAAAAAGAATTTTTCTCAAAACGTTAACGGTCTCGTATTTCAATA</left_flank>
        <right_flank>CCAGCGTAAAAATCTTTATCAACTTTATGTGAAGTCCTGTATCTCGGTTC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGTGATAGATCTCCTTATGCTTTTTTTCCTTTTTTTAACTATAAATTTGTAGAATTTCCATACAAAAACGGAATGTTTCAACTCCTCCATGTGTGATTCCTCTGATTTTTGAGAATTCGGTTTATCTAAAAAGAGTGATATCTCAAAAACTAAAACTGCTATCAAAAATGTGTCAACTACAAAAATGTTGAAAACACTATTTCCCATATTTCCAAAGATGACAACTTTTTCTAGCTACTGTAGTTTTCAAGATTAGATCTCGCATTGTACTGTCCATTTTTAGCGCTCCTGGAAAATTCTGGAAACTTTGGCATGTAAAAGACTTATTTCAAAAAACGTTTTCGTCAATCAGTCCAATAAAACTTTTTTCGAAGTTTCATGAAAAGCCATTTTTTCAAAGACTATGAATTAAAAATGCAGTATTTCACTTTTTTCCGGTTTCATCAAAGTAAAAAAAAGAATTTTTCTCAAAACGTTAACGGTCTCGTATTTCAATACCCAGCGTAAAAATCTTTATCAACTTTATGTGAAGTCCTGTATCTCGGTTCCTGTGAATTATATCAAAAAGTGGTCAACTAATAAAATGTGTGAAATTTTATGTTAAAGGTGGGGGGACATGAAAAAAATAATTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGAATACTCTTGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGCATTTTATCAGTTTTCTACTTTCTCATATATTTTACAGGAAATGATATAAGAGGGCTCAAAGTTTACGGTATGCCTATCCACCAACTAACAGGAAATCGTATAGTTAAATTGTGTCTAGATG</canonical>
            <polymorphic>TCTGTGATAGATCTCCTTATGCTTTTTTTCCTTTTTTTAACTATAAATTTGTAGAATTTCCATACAAAAACGGAATGTTTCAACTCCTCCATGTGTGATTCCTCTGATTTTTGAGAATTCGGTTTATCTAAAAAGAGTGATATCTCAAAAACTAAAACTGCTATCAAAAATGTGTCAACTACAAAAATGTTGAAAACACTATTTCCCATATTTCCAAAGATGACAACTTTTTCTAGCTACTGTAGTTTTCAAGATTAGATCTCGCATTGTACTGTCCATTTTTAGCGCTCCTGGAAAATTCTGGAAACTTTGGCATGTAAAAGACTTATTTCAAAAAACGTTTTCGTCAATCAGTCCAATAAAACTTTTTTCGAAGTTTCATGAAAAGCCATTTTTTCAAAGACTATGAATTAAAAATGCAGTATTTCACTTTTTTCCGGTTTCATCAAAGTAAAAAAAAGAATTTTTCTCAAAACGTTAACGGTCTCGTATTTCAATAMCCAGCGTAAAAATCTTTATCAACTTTATGTGAAGTCCTGTATCTCGGTTCCTGTGAATTATATCAAAAAGTGGTCAACTAATAAAATGTGTGAAATTTTATGTTAAAGGTGGGGGGACATGAAAAAAATAATTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGAATACTCTTGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGCATTTTATCAGTTTTCTACTTTCTCATATATTTTACAGGAAATGATATAAGAGGGCTCAAAGTTTACGGTATGCCTATCCACCAACTAACAGGAAATCGTATAGTTAAATTGTGTCTAGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCGGTTTCATCAAAGTA</pcr_primer_p1>
		<pcr_primer_p2>TCGCCTTTATGTATGCAATC</pcr_primer_p2>
		<pcr_amplicon_size>335</pcr_amplicon_size>
		<canonical_amplicon>TTTCCGGTTTCATCAAAGTAAAAAAAAGAATTTTTCTCAAAACGTTAACGGTCTCGTATTTCAATACCCAGCGTAAAAATCTTTATCAACTTTATGTGAAGTCCTGTATCTCGGTTCCTGTGAATTATATCAAAAAGTGGTCAACTAATAAAATGTGTGAAATTTTATGTTAAAGGTGGGGGGACATGAAAAAAATAATTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCGA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCGGTTTCATCAAAGTAAAAAAAAGAATTTTTCTCAAAACGTTAACGGTCTCGTATTTCAATAMCCAGCGTAAAAATCTTTATCAACTTTATGTGAAGTCCTGTATCTCGGTTCCTGTGAATTATATCAAAAAGTGGTCAACTAATAAAATGTGTGAAATTTTATGTTAAAGGTGGGGGGACATGAAAAAAATAATTTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34189</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>36357</contig_pos>
        <strand></strand>
        <context>AAATGAGCCC[T/C]CAGCTGGCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATCAAGGATTGTGCAGATGTCGGGATGTACACGTTCAGTAAAATGAGCCC</left_flank>
        <right_flank>CAGCTGGCTGCGTTTGTAGGAGTCGGGTTGTTCGTGAAGAATATCATTGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCACGTTGGTTTTGGCGTCTGAAGTGCAGTGGAGCGCGAAATAGAAAGTTCATATAAGAAAAACACTCACCACTCATTTTGTGCCTGTCGGGTAGCCTCTGTCGTCTTTCATGCGGAGTGGCCTTTTATAGATAGTGACTGTTCTAAAGATCAGTTTGTGGTTTGATACCTTATCAAGTGTTATCTAGGTTTTTAAAATCAAAGGTTAGTTTTAATTGCCGATTCTCGAAACAAACAACTTTTTTGTGCCTAGATTGTTTCAATGAAATGATAAAAAACTGGCACTGATCTTTGTAACTAGAGGAAAGTATAAAAGAAAAGAGATAAGAGGTGAGATAGCCATAGTCGAGGACGATGAGTGACGGTAGGTGACTTTTCCAAATGCGCTCCACTGCACAATCCAACTTTTCCAGACGCCAAAACCAACGTTTCCAATGTAGTGACATCCATCAAGGATTGTGCAGATGTCGGGATGTACACGTTCAGTAAAATGAGCCCTCAGCTGGCTGCGTTTGTAGGAGTCGGGTTGTTCGTGAAGAATATCATTGTGTCGACAGCAGCAGACCCGAATGGAGAGGTTTTGAAAAAGTTGGGCGACTTGAAAGTGGACCTGAAGAGAGTGAGTCCATTATTGGGTTCGAAGTTCTAGGTTTATTGATTAGAAATGGGTTACTGTAGCTCTGAAATCGGCATTTTCGTTAAAAAATGAGAAATTCCATCTCGACACATTGCCGTTTTCGGTCTAAAAATATTTTTTCAGCTCATTTTTAAATTTCAGCTCGAAGAAAGCATGAAGAACGGATTCGACAACCTCAAAGCCTTCATTTTAATGCAAGAGTTTCATAATGTGAGCTAAAAATCTGAAATTCTGAAAATCCGAAACTATGAAATTTTGAAAGTCGAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTTGAAATTCTGAAATTATGAAAATACGGGATTACGTTTCTGAAAATTGGAAATTTTGA</canonical>
            <polymorphic>GCCACGTTGGTTTTGGCGTCTGAAGTGCAGTGGAGCGCGAAATAGAAAGTTCATATAAGAAAAACACTCACCACTCATTTTGTGCCTGTCGGGTAGCCTCTGTCGTCTTTCATGCGGAGTGGCCTTTTATAGATAGTGACTGTTCTAAAGATCAGTTTGTGGTTTGATACCTTATCAAGTGTTATCTAGGTTTTTAAAATCAAAGGTTAGTTTTAATTGCCGATTCTCGAAACAAACAACTTTTTTGTGCCTAGATTGTTTCAATGAAATGATAAAAAACTGGCACTGATCTTTGTAACTAGAGGAAAGTATAAAAGAAAAGAGATAAGAGGTGAGATAGCCATAGTCGAGGACGATGAGTGACGGTAGGTGACTTTTCCAAATGCGCTCCACTGCACAATCCAACTTTTCCAGACGCCAAAACCAACGTTTCCAATGTAGTGACATCCATCAAGGATTGTGCAGATGTCGGGATGTACACGTTCAGTAAAATGAGCCCYCAGCTGGCTGCGTTTGTAGGAGTCGGGTTGTTCGTGAAGAATATCATTGTGTCGACAGCAGCAGACCCGAATGGAGAGGTTTTGAAAAAGTTGGGCGACTTGAAAGTGGACCTGAAGAGAGTGAGTCCATTATTGGGTTCGAAGTTCTAGGTTTATTGATTAGAAATGGGTTACTGTAGCTCTGAAATCGGCATTTTCGTTAAAAAATGAGAAATTCCATCTCGACACATTGCCGTTTTCGGTCTAAAAATATTTTTTCAGCTCATTTTTAAATTTCAGCTCGAAGAAAGCATGAAGAACGGATTCGACAACCTCAAAGCCTTCATTTTAATGCAAGAGTTTCATAATGTGAGCTAAAAATCTGAAATTCTGAAAATCCGAAACTATGAAATTTTGAAAGTCGAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTTGAAATTCTGAAATTATGAAAATACGGGATTACGTTTCTGAAAATTGGAAATTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATGTAGTGACATCCATCAAG</pcr_primer_p1>
		<pcr_primer_p2>GAGCTACAGTAACCCATTTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAATGTAGTGACATCCATCAAGGATTGTGCAGATGTCGGGATGTACACGTTCAGTAAAATGAGCCCTCAGCTGGCTGCGTTTGTAGGAGTCGGGTTGTTCGTGAAGAATATCATTGTGTCGACAGCAGCAGACCCGAATGGAGAGGTTTTGAAAAAGTTGGGCGACTTGAAAGTGGACCTGAAGAGAGTGAGTCCATTATTGGGTTCGAAGTTCTAGGTTTATTGATTAGAAATGGGTTACTGTAGCTC</canonical_amplicon>
		<polymorphic_amplicon>CAATGTAGTGACATCCATCAAGGATTGTGCAGATGTCGGGATGTACACGTTCAGTAAAATGAGCCCYCAGCTGGCTGCGTTTGTAGGAGTCGGGTTGTTCGTGAAGAATATCATTGTGTCGACAGCAGCAGACCCGAATGGAGAGGTTTTGAAAAAGTTGGGCGACTTGAAAGTGGACCTGAAGAGAGTGAGTCCATTATTGGGTTCGAAGTTCTAGGTTTATTGATTAGAAATGGGTTACTGTAGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34190</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>36420</contig_pos>
        <strand></strand>
        <context>CGACAGCAGC[A/G]GACCCGAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGTAGGAGTCGGGTTGTTCGTGAAGAATATCATTGTGTCGACAGCAGC</left_flank>
        <right_flank>GACCCGAATGGAGAGGTTTTGAAAAAGTTGGGCGACTTGAAAGTGGACCT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACTCACCACTCATTTTGTGCCTGTCGGGTAGCCTCTGTCGTCTTTCATGCGGAGTGGCCTTTTATAGATAGTGACTGTTCTAAAGATCAGTTTGTGGTTTGATACCTTATCAAGTGTTATCTAGGTTTTTAAAATCAAAGGTTAGTTTTAATTGCCGATTCTCGAAACAAACAACTTTTTTGTGCCTAGATTGTTTCAATGAAATGATAAAAAACTGGCACTGATCTTTGTAACTAGAGGAAAGTATAAAAGAAAAGAGATAAGAGGTGAGATAGCCATAGTCGAGGACGATGAGTGACGGTAGGTGACTTTTCCAAATGCGCTCCACTGCACAATCCAACTTTTCCAGACGCCAAAACCAACGTTTCCAATGTAGTGACATCCATCAAGGATTGTGCAGATGTCGGGATGTACACGTTCAGTAAAATGAGCCCTCAGCTGGCTGCGTTTGTAGGAGTCGGGTTGTTCGTGAAGAATATCATTGTGTCGACAGCAGCAGACCCGAATGGAGAGGTTTTGAAAAAGTTGGGCGACTTGAAAGTGGACCTGAAGAGAGTGAGTCCATTATTGGGTTCGAAGTTCTAGGTTTATTGATTAGAAATGGGTTACTGTAGCTCTGAAATCGGCATTTTCGTTAAAAAATGAGAAATTCCATCTCGACACATTGCCGTTTTCGGTCTAAAAATATTTTTTCAGCTCATTTTTAAATTTCAGCTCGAAGAAAGCATGAAGAACGGATTCGACAACCTCAAAGCCTTCATTTTAATGCAAGAGTTTCATAATGTGAGCTAAAAATCTGAAATTCTGAAAATCCGAAACTATGAAATTTTGAAAGTCGAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTTGAAATTCTGAAATTATGAAAATACGGGATTACGTTTCTGAAAATTGGAAATTTTGAAATTCCAAAGTTCTGAGATTCTGAAATTCTGAAATGCTGAGATTTTGAAAGTCAAAAAATCTG</canonical>
            <polymorphic>ACACTCACCACTCATTTTGTGCCTGTCGGGTAGCCTCTGTCGTCTTTCATGCGGAGTGGCCTTTTATAGATAGTGACTGTTCTAAAGATCAGTTTGTGGTTTGATACCTTATCAAGTGTTATCTAGGTTTTTAAAATCAAAGGTTAGTTTTAATTGCCGATTCTCGAAACAAACAACTTTTTTGTGCCTAGATTGTTTCAATGAAATGATAAAAAACTGGCACTGATCTTTGTAACTAGAGGAAAGTATAAAAGAAAAGAGATAAGAGGTGAGATAGCCATAGTCGAGGACGATGAGTGACGGTAGGTGACTTTTCCAAATGCGCTCCACTGCACAATCCAACTTTTCCAGACGCCAAAACCAACGTTTCCAATGTAGTGACATCCATCAAGGATTGTGCAGATGTCGGGATGTACACGTTCAGTAAAATGAGCCCTCAGCTGGCTGCGTTTGTAGGAGTCGGGTTGTTCGTGAAGAATATCATTGTGTCGACAGCAGCRGACCCGAATGGAGAGGTTTTGAAAAAGTTGGGCGACTTGAAAGTGGACCTGAAGAGAGTGAGTCCATTATTGGGTTCGAAGTTCTAGGTTTATTGATTAGAAATGGGTTACTGTAGCTCTGAAATCGGCATTTTCGTTAAAAAATGAGAAATTCCATCTCGACACATTGCCGTTTTCGGTCTAAAAATATTTTTTCAGCTCATTTTTAAATTTCAGCTCGAAGAAAGCATGAAGAACGGATTCGACAACCTCAAAGCCTTCATTTTAATGCAAGAGTTTCATAATGTGAGCTAAAAATCTGAAATTCTGAAAATCCGAAACTATGAAATTTTGAAAGTCGAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTTGAAATTCTGAAATTATGAAAATACGGGATTACGTTTCTGAAAATTGGAAATTTTGAAATTCCAAAGTTCTGAGATTCTGAAATTCTGAAATGCTGAGATTTTGAAAGTCAAAAAATCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATGTAGTGACATCCATCAAG</pcr_primer_p1>
		<pcr_primer_p2>GAGCTACAGTAACCCATTTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAATGTAGTGACATCCATCAAGGATTGTGCAGATGTCGGGATGTACACGTTCAGTAAAATGAGCCCTCAGCTGGCTGCGTTTGTAGGAGTCGGGTTGTTCGTGAAGAATATCATTGTGTCGACAGCAGCAGACCCGAATGGAGAGGTTTTGAAAAAGTTGGGCGACTTGAAAGTGGACCTGAAGAGAGTGAGTCCATTATTGGGTTCGAAGTTCTAGGTTTATTGATTAGAAATGGGTTACTGTAGCTC</canonical_amplicon>
		<polymorphic_amplicon>CAATGTAGTGACATCCATCAAGGATTGTGCAGATGTCGGGATGTACACGTTCAGTAAAATGAGCCCTCAGCTGGCTGCGTTTGTAGGAGTCGGGTTGTTCGTGAAGAATATCATTGTGTCGACAGCAGCRGACCCGAATGGAGAGGTTTTGAAAAAGTTGGGCGACTTGAAAGTGGACCTGAAGAGAGTGAGTCCATTATTGGGTTCGAAGTTCTAGGTTTATTGATTAGAAATGGGTTACTGTAGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34191</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>36485</contig_pos>
        <strand></strand>
        <context>AGAGTGAGTC[C/A]WTTATTGGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GGTTTTGAAAAAGTTGGGCGACTTGAAAGTGGACCTGAAGAGAGTGAGTC</left_flank>
        <right_flank>ATTATTGGGTTCGAAGTTCTAGGTTTATTGATTAGAAATGGGTTACTGTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGATAGTGACTGTTCTAAAGATCAGTTTGTGGTTTGATACCTTATCAAGTGTTATCTAGGTTTTTAAAATCAAAGGTTAGTTTTAATTGCCGATTCTCGAAACAAACAACTTTTTTGTGCCTAGATTGTTTCAATGAAATGATAAAAAACTGGCACTGATCTTTGTAACTAGAGGAAAGTATAAAAGAAAAGAGATAAGAGGTGAGATAGCCATAGTCGAGGACGATGAGTGACGGTAGGTGACTTTTCCAAATGCGCTCCACTGCACAATCCAACTTTTCCAGACGCCAAAACCAACGTTTCCAATGTAGTGACATCCATCAAGGATTGTGCAGATGTCGGGATGTACACGTTCAGTAAAATGAGCCCTCAGCTGGCTGCGTTTGTAGGAGTCGGGTTGTTCGTGAAGAATATCATTGTGTCGACAGCAGCAGACCCGAATGGAGAGGTTTTGAAAAAGTTGGGCGACTTGAAAGTGGACCTGAAGAGAGTGAGTCCATTATTGGGTTCGAAGTTCTAGGTTTATTGATTAGAAATGGGTTACTGTAGCTCTGAAATCGGCATTTTCGTTAAAAAATGAGAAATTCCATCTCGACACATTGCCGTTTTCGGTCTAAAAATATTTTTTCAGCTCATTTTTAAATTTCAGCTCGAAGAAAGCATGAAGAACGGATTCGACAACCTCAAAGCCTTCATTTTAATGCAAGAGTTTCATAATGTGAGCTAAAAATCTGAAATTCTGAAAATCCGAAACTATGAAATTTTGAAAGTCGAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTTGAAATTCTGAAATTATGAAAATACGGGATTACGTTTCTGAAAATTGGAAATTTTGAAATTCCAAAGTTCTGAGATTCTGAAATTCTGAAATGCTGAGATTTTGAAAGTCAAAAAATCTGGAATTCTGAAATTATAGAAATAGGAAAATCGGAAGTTTTAAAGTTTTAAAGTTTTGAAAAATTGA</canonical>
            <polymorphic>ATAGATAGTGACTGTTCTAAAGATCAGTTTGTGGTTTGATACCTTATCAAGTGTTATCTAGGTTTTTAAAATCAAAGGTTAGTTTTAATTGCCGATTCTCGAAACAAACAACTTTTTTGTGCCTAGATTGTTTCAATGAAATGATAAAAAACTGGCACTGATCTTTGTAACTAGAGGAAAGTATAAAAGAAAAGAGATAAGAGGTGAGATAGCCATAGTCGAGGACGATGAGTGACGGTAGGTGACTTTTCCAAATGCGCTCCACTGCACAATCCAACTTTTCCAGACGCCAAAACCAACGTTTCCAATGTAGTGACATCCATCAAGGATTGTGCAGATGTCGGGATGTACACGTTCAGTAAAATGAGCCCTCAGCTGGCTGCGTTTGTAGGAGTCGGGTTGTTCGTGAAGAATATCATTGTGTCGACAGCAGCAGACCCGAATGGAGAGGTTTTGAAAAAGTTGGGCGACTTGAAAGTGGACCTGAAGAGAGTGAGTCMATTATTGGGTTCGAAGTTCTAGGTTTATTGATTAGAAATGGGTTACTGTAGCTCTGAAATCGGCATTTTCGTTAAAAAATGAGAAATTCCATCTCGACACATTGCCGTTTTCGGTCTAAAAATATTTTTTCAGCTCATTTTTAAATTTCAGCTCGAAGAAAGCATGAAGAACGGATTCGACAACCTCAAAGCCTTCATTTTAATGCAAGAGTTTCATAATGTGAGCTAAAAATCTGAAATTCTGAAAATCCGAAACTATGAAATTTTGAAAGTCGAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTTGAAATTCTGAAATTATGAAAATACGGGATTACGTTTCTGAAAATTGGAAATTTTGAAATTCCAAAGTTCTGAGATTCTGAAATTCTGAAATGCTGAGATTTTGAAAGTCAAAAAATCTGGAATTCTGAAATTATAGAAATAGGAAAATCGGAAGTTTTAAAGTTTTAAAGTTTTGAAAAATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>495 375 130</canonical_bands>
                <polymorphic_bands>625 375</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCGTGAAGAATATCATTGTGT</pcr_primer_p1>
		<pcr_primer_p2>CTGAAATTTAAAAATGAGCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTCGTGAAGAATATCATTGTGTCGACAGCAGCAGACCCGAATGGAGAGGTTTTGAAAAAGTTGGGCGACTTGAAAGTGGACCTGAAGAGAGTGAGTCCATTATTGGGTTCGAAGTTCTAGGTTTATTGATTAGAAATGGGTTACTGTAGCTCTGAAATCGGCATTTTCGTTAAAAAATGAGAAATTCCATCTCGACACATTGCCGTTTTCGGTCTAAAAATATTTTTTCAGCTCATTTTTAAATTTCAG</canonical_amplicon>
		<polymorphic_amplicon>GTTCGTGAAGAATATCATTGTGTCGACAGCAGCAGACCCGAATGGAGAGGTTTTGAAAAAGTTGGGCGACTTGAAAGTGGACCTGAAGAGAGTGAGTCMATTATTGGGTTCGAAGTTCTAGGTTTATTGATTAGAAATGGGTTACTGTAGCTCTGAAATCGGCATTTTCGTTAAAAAATGAGAAATTCCATCTCGACACATTGCCGTTTTCGGTCTAAAAATATTTTTTCAGCTCATTTTTAAATTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34192</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>36486</contig_pos>
        <strand></strand>
        <context>GAGTGAGTCM[A/T]TTATTGGGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTTTGAAAAAGTTGGGCGACTTGAAAGTGGACCTGAAGAGAGTGAGTCC</left_flank>
        <right_flank>TTATTGGGTTCGAAGTTCTAGGTTTATTGATTAGAAATGGGTTACTGTAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGATAGTGACTGTTCTAAAGATCAGTTTGTGGTTTGATACCTTATCAAGTGTTATCTAGGTTTTTAAAATCAAAGGTTAGTTTTAATTGCCGATTCTCGAAACAAACAACTTTTTTGTGCCTAGATTGTTTCAATGAAATGATAAAAAACTGGCACTGATCTTTGTAACTAGAGGAAAGTATAAAAGAAAAGAGATAAGAGGTGAGATAGCCATAGTCGAGGACGATGAGTGACGGTAGGTGACTTTTCCAAATGCGCTCCACTGCACAATCCAACTTTTCCAGACGCCAAAACCAACGTTTCCAATGTAGTGACATCCATCAAGGATTGTGCAGATGTCGGGATGTACACGTTCAGTAAAATGAGCCCTCAGCTGGCTGCGTTTGTAGGAGTCGGGTTGTTCGTGAAGAATATCATTGTGTCGACAGCAGCAGACCCGAATGGAGAGGTTTTGAAAAAGTTGGGCGACTTGAAAGTGGACCTGAAGAGAGTGAGTCCATTATTGGGTTCGAAGTTCTAGGTTTATTGATTAGAAATGGGTTACTGTAGCTCTGAAATCGGCATTTTCGTTAAAAAATGAGAAATTCCATCTCGACACATTGCCGTTTTCGGTCTAAAAATATTTTTTCAGCTCATTTTTAAATTTCAGCTCGAAGAAAGCATGAAGAACGGATTCGACAACCTCAAAGCCTTCATTTTAATGCAAGAGTTTCATAATGTGAGCTAAAAATCTGAAATTCTGAAAATCCGAAACTATGAAATTTTGAAAGTCGAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTTGAAATTCTGAAATTATGAAAATACGGGATTACGTTTCTGAAAATTGGAAATTTTGAAATTCCAAAGTTCTGAGATTCTGAAATTCTGAAATGCTGAGATTTTGAAAGTCAAAAAATCTGGAATTCTGAAATTATAGAAATAGGAAAATCGGAAGTTTTAAAGTTTTAAAGTTTTGAAAAATTGAA</canonical>
            <polymorphic>TAGATAGTGACTGTTCTAAAGATCAGTTTGTGGTTTGATACCTTATCAAGTGTTATCTAGGTTTTTAAAATCAAAGGTTAGTTTTAATTGCCGATTCTCGAAACAAACAACTTTTTTGTGCCTAGATTGTTTCAATGAAATGATAAAAAACTGGCACTGATCTTTGTAACTAGAGGAAAGTATAAAAGAAAAGAGATAAGAGGTGAGATAGCCATAGTCGAGGACGATGAGTGACGGTAGGTGACTTTTCCAAATGCGCTCCACTGCACAATCCAACTTTTCCAGACGCCAAAACCAACGTTTCCAATGTAGTGACATCCATCAAGGATTGTGCAGATGTCGGGATGTACACGTTCAGTAAAATGAGCCCTCAGCTGGCTGCGTTTGTAGGAGTCGGGTTGTTCGTGAAGAATATCATTGTGTCGACAGCAGCAGACCCGAATGGAGAGGTTTTGAAAAAGTTGGGCGACTTGAAAGTGGACCTGAAGAGAGTGAGTCCWTTATTGGGTTCGAAGTTCTAGGTTTATTGATTAGAAATGGGTTACTGTAGCTCTGAAATCGGCATTTTCGTTAAAAAATGAGAAATTCCATCTCGACACATTGCCGTTTTCGGTCTAAAAATATTTTTTCAGCTCATTTTTAAATTTCAGCTCGAAGAAAGCATGAAGAACGGATTCGACAACCTCAAAGCCTTCATTTTAATGCAAGAGTTTCATAATGTGAGCTAAAAATCTGAAATTCTGAAAATCCGAAACTATGAAATTTTGAAAGTCGAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTTGAAATTCTGAAATTATGAAAATACGGGATTACGTTTCTGAAAATTGGAAATTTTGAAATTCCAAAGTTCTGAGATTCTGAAATTCTGAAATGCTGAGATTTTGAAAGTCAAAAAATCTGGAATTCTGAAATTATAGAAATAGGAAAATCGGAAGTTTTAAAGTTTTAAAGTTTTGAAAAATTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCGTGAAGAATATCATTGTGT</pcr_primer_p1>
		<pcr_primer_p2>CTGAAATTTAAAAATGAGCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTCGTGAAGAATATCATTGTGTCGACAGCAGCAGACCCGAATGGAGAGGTTTTGAAAAAGTTGGGCGACTTGAAAGTGGACCTGAAGAGAGTGAGTCCATTATTGGGTTCGAAGTTCTAGGTTTATTGATTAGAAATGGGTTACTGTAGCTCTGAAATCGGCATTTTCGTTAAAAAATGAGAAATTCCATCTCGACACATTGCCGTTTTCGGTCTAAAAATATTTTTTCAGCTCATTTTTAAATTTCAG</canonical_amplicon>
		<polymorphic_amplicon>GTTCGTGAAGAATATCATTGTGTCGACAGCAGCAGACCCGAATGGAGAGGTTTTGAAAAAGTTGGGCGACTTGAAAGTGGACCTGAAGAGAGTGAGTCCWTTATTGGGTTCGAAGTTCTAGGTTTATTGATTAGAAATGGGTTACTGTAGCTCTGAAATCGGCATTTTCGTTAAAAAATGAGAAATTCCATCTCGACACATTGCCGTTTTCGGTCTAAAAATATTTTTTCAGCTCATTTTTAAATTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34193</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>36573</contig_pos>
        <strand></strand>
        <context>AATGAGAAAT[T/G]CCATCTCGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATGGGTTACTGTAGCTCTGAAATCGGCATTTTCGTTAAAAAATGAGAAAT</left_flank>
        <right_flank>CCATCTCGACACATTGCCGTTTTCGGTCTAAAAATATTTTTTCAGCTCAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCCGATTCTCGAAACAAACAACTTTTTTGTGCCTAGATTGTTTCAATGAAATGATAAAAAACTGGCACTGATCTTTGTAACTAGAGGAAAGTATAAAAGAAAAGAGATAAGAGGTGAGATAGCCATAGTCGAGGACGATGAGTGACGGTAGGTGACTTTTCCAAATGCGCTCCACTGCACAATCCAACTTTTCCAGACGCCAAAACCAACGTTTCCAATGTAGTGACATCCATCAAGGATTGTGCAGATGTCGGGATGTACACGTTCAGTAAAATGAGCCCTCAGCTGGCTGCGTTTGTAGGAGTCGGGTTGTTCGTGAAGAATATCATTGTGTCGACAGCAGCAGACCCGAATGGAGAGGTTTTGAAAAAGTTGGGCGACTTGAAAGTGGACCTGAAGAGAGTGAGTCCATTATTGGGTTCGAAGTTCTAGGTTTATTGATTAGAAATGGGTTACTGTAGCTCTGAAATCGGCATTTTCGTTAAAAAATGAGAAATTCCATCTCGACACATTGCCGTTTTCGGTCTAAAAATATTTTTTCAGCTCATTTTTAAATTTCAGCTCGAAGAAAGCATGAAGAACGGATTCGACAACCTCAAAGCCTTCATTTTAATGCAAGAGTTTCATAATGTGAGCTAAAAATCTGAAATTCTGAAAATCCGAAACTATGAAATTTTGAAAGTCGAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTTGAAATTCTGAAATTATGAAAATACGGGATTACGTTTCTGAAAATTGGAAATTTTGAAATTCCAAAGTTCTGAGATTCTGAAATTCTGAAATGCTGAGATTTTGAAAGTCAAAAAATCTGGAATTCTGAAATTATAGAAATAGGAAAATCGGAAGTTTTAAAGTTTTAAAGTTTTGAAAAATTGAAATTCTGGGGAATTCTGACATTCTGGGGAATTCTGAAATTCTGAAAAGTCGGAATTGTGAGATTCGGAGATTCTGAGATTCAGAGATT</canonical>
            <polymorphic>TTGCCGATTCTCGAAACAAACAACTTTTTTGTGCCTAGATTGTTTCAATGAAATGATAAAAAACTGGCACTGATCTTTGTAACTAGAGGAAAGTATAAAAGAAAAGAGATAAGAGGTGAGATAGCCATAGTCGAGGACGATGAGTGACGGTAGGTGACTTTTCCAAATGCGCTCCACTGCACAATCCAACTTTTCCAGACGCCAAAACCAACGTTTCCAATGTAGTGACATCCATCAAGGATTGTGCAGATGTCGGGATGTACACGTTCAGTAAAATGAGCCCTCAGCTGGCTGCGTTTGTAGGAGTCGGGTTGTTCGTGAAGAATATCATTGTGTCGACAGCAGCAGACCCGAATGGAGAGGTTTTGAAAAAGTTGGGCGACTTGAAAGTGGACCTGAAGAGAGTGAGTCCATTATTGGGTTCGAAGTTCTAGGTTTATTGATTAGAAATGGGTTACTGTAGCTCTGAAATCGGCATTTTCGTTAAAAAATGAGAAATKCCATCTCGACACATTGCCGTTTTCGGTCTAAAAATATTTTTTCAGCTCATTTTTAAATTTCAGCTCGAAGAAAGCATGAAGAACGGATTCGACAACCTCAAAGCCTTCATTTTAATGCAAGAGTTTCATAATGTGAGCTAAAAATCTGAAATTCTGAAAATCCGAAACTATGAAATTTTGAAAGTCGAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTTGAAATTCTGAAATTATGAAAATACGGGATTACGTTTCTGAAAATTGGAAATTTTGAAATTCCAAAGTTCTGAGATTCTGAAATTCTGAAATGCTGAGATTTTGAAAGTCAAAAAATCTGGAATTCTGAAATTATAGAAATAGGAAAATCGGAAGTTTTAAAGTTTTAAAGTTTTGAAAAATTGAAATTCTGGGGAATTCTGACATTCTGGGGAATTCTGAAATTCTGAAAAGTCGGAATTGTGAGATTCGGAGATTCTGAGATTCAGAGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>496 94 64 59 52 46 40 24 24 18 16 10 9 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>555 94 64 52 46 40 24 24 18 16 10 9 8 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>496 94 59 50 40 36 31 24 24 18 16 16 10 9 8 8 8 8 8 8 8 8 7 6</canonical_bands>
                <polymorphic_bands>555 94 50 40 36 31 24 24 18 16 16 10 9 8 8 8 8 8 8 8 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCGTGAAGAATATCATTGTGT</pcr_primer_p1>
		<pcr_primer_p2>CTGAAATTTAAAAATGAGCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTCGTGAAGAATATCATTGTGTCGACAGCAGCAGACCCGAATGGAGAGGTTTTGAAAAAGTTGGGCGACTTGAAAGTGGACCTGAAGAGAGTGAGTCCATTATTGGGTTCGAAGTTCTAGGTTTATTGATTAGAAATGGGTTACTGTAGCTCTGAAATCGGCATTTTCGTTAAAAAATGAGAAATTCCATCTCGACACATTGCCGTTTTCGGTCTAAAAATATTTTTTCAGCTCATTTTTAAATTTCAG</canonical_amplicon>
		<polymorphic_amplicon>GTTCGTGAAGAATATCATTGTGTCGACAGCAGCAGACCCGAATGGAGAGGTTTTGAAAAAGTTGGGCGACTTGAAAGTGGACCTGAAGAGAGTGAGTCCATTATTGGGTTCGAAGTTCTAGGTTTATTGATTAGAAATGGGTTACTGTAGCTCTGAAATCGGCATTTTCGTTAAAAAATGAGAAATKCCATCTCGACACATTGCCGTTTTCGGTCTAAAAATATTTTTTCAGCTCATTTTTAAATTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34199</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>104196</contig_pos>
        <strand>+</strand>
        <context>TTTCAATGAC[C/G]TAGGTCTTGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGGTTGAAAATTTGGAAAAATTGAGTATTTTCAGGCTGTTTTTCAATGAC</left_flank>
        <right_flank>TAGGTCTTGCAAAAGTTCGGCCACGGACCGAATTTTACCAAAAAAGGATA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAGTCTCCCATCGTGTTGGACGGCTTCTCGAGCGGCCGCTGCTGCTGGTGGTGGTGGACGATGAGGATGGCGTAGTGGTGGTGGCATTAGTAGCGTCTGGAAAATTGTTAAAATGGAATTTTGGATTAAAAATGATGGTGGCCTAGGTTTCACAAAAGTTCGGCCACGATGAAAAATCGATGTTAAGCTGAAAATTGAGCAATTTTCAGCCGTTTTTCCGATGGCCTAGGTTTCCCCAAAGTTCGGCCGGAAAAAAAACTCGATTTCAGGCTGAAAATTGAATATTTTCAGGCTGTTTTTCCAATGGCCTAGGTTTCCCTAAAGTTCGGCCACGAGAAACAAGGTTGAATTTTATCCAAAAAATAATGGGAAACATAGGGTATTTTCAGGCTGATTCTCCATGGCCTAGCTTTTGCAAAAGTTCGTCCACAAGGAAAAATTCTATTTTAGGTTGAAAATTTGGAAAAATTGAGTATTTTCAGGCTGTTTTTCAATGACCTAGGTCTTGCAAAAGTTCGGCCACGGACCGAATTTTACCAAAAAAGGATATTTTTCAACTATTTTTAAATGGCCTAGGTTTCCCTAAAGCTCGGCCACCTCCTTCTGCAAAAAAAAAACTCACTGGACGTAGATGACTTCTGAGCCGTCGGTGCTGCTGCTGGAGCATTGATCCCGCCAAACATCGAAGTAATGCGATCCTTCAATGACATACTGTGCTCGGCTGGCGCGTCGTCGGCGCTCTCACTAGCGGCTCCACGGGTACGCGAGCGAGTGCTCGGCGAGTTGACGACAGTGGCTCCTGGAGCAGTCGTAGTGGTGGTTGTGGATGGAGCGGTGTTGTTGGTGTTGGTGGCGTTGGATGGATGATCGTCGAGTGGAATGTCCGAGAGCTGGAAAACGAGATTTTGAGTGATTTCCACGTCCTGGGATAATCCAAGCTACAGTATTCCCGGTGGGATTACTGTAGCTCGGACAAGAAATATGATTTCCAGCCAAAAC</canonical>
            <polymorphic>TTAGTCTCCCATCGTGTTGGACGGCTTCTCGAGCGGCCGCTGCTGCTGGTGGTGGTGGACGATGAGGATGGCGTAGTGGTGGTGGCATTAGTAGCGTCTGGAAAATTGTTAAAATGGAATTTTGGATTAAAAATGATGGTGGCCTAGGTTTCACAAAAGTTCGGCCACGATGAAAAATCGATGTTAAGCTGAAAATTGAGCAATTTTCAGCCGTTTTTCCGATGGCCTAGGTTTCCCCAAAGTTCGGCCGGAAAAAAAACTCGATTTCAGGCTGAAAATTGAATATTTTCAGGCTGTTTTTCCAATGGCCTAGGTTTCCCTAAAGTTCGGCCACGAGAAACAAGGTTGAATTTTATCCAAAAAATAATGGGAAACATAGGGTATTTTCAGGCTGATTCTCCATGGCCTAGCTTTTGCAAAAGTTCGTCCACAAGGAAAAATTCTATTTTAGGTTGAAAATTTGGAAAAATTGAGTATTTTCAGGCTGTTTTTCAATGACSTAGGTCTTGCAAAAGTTCGGCCACGGACCGAATTTTACCAAAAAAGGATATTTTTCAACTATTTTTAAATGGCCTAGGTTTCCCTAAAGCTCGGCCACCTCCTTCTGCAAAAAAAAAACTCACTGGACGTAGATGACTTCTGAGCCGTCGGTGCTGCTGCTGGAGCATTGATCCCGCCAAACATCGAAGTAATGCGATCCTTCAATGACATACTGTGCTCGGCTGGCGCGTCGTCGGCGCTCTCACTAGCGGCTCCACGGGTACGCGAGCGAGTGCTCGGCGAGTTGACGACAGTGGCTCCTGGAGCAGTCGTAGTGGTGGTTGTGGATGGAGCGGTGTTGTTGGTGTTGGTGGCGTTGGATGGATGATCGTCGAGTGGAATGTCCGAGAGCTGGAAAACGAGATTTTGAGTGATTTCCACGTCCTGGGATAATCCAAGCTACAGTATTCCCGGTGGGATTACTGTAGCTCGGACAAGAAATATGATTTCCAGCCAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCTAGG</site>
                <isoschizomers>
                    <enzyme>AvrII</enzyme>
                    <enzyme>BlnI</enzyme>
                    <enzyme>BspA2I</enzyme>
                    <enzyme>XmaJI</enzyme>
                </isoschizomers>
                <canonical_bands>427 190 143 83 83 74</canonical_bands>
                <polymorphic_bands>427 264 143 83 83</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>254 172 144 97 93 83 83 74</canonical_bands>
                <polymorphic_bands>254 172 167 144 97 83 83</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>182 169 143 99 91 83 83 76 52 22</canonical_bands>
                <polymorphic_bands>182 169 143 121 91 83 83 76 52</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>427 143 99 91 83 83 74</canonical_bands>
                <polymorphic_bands>427 173 143 91 83 83</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAGAAACAAGGTTGAATTTTA</pcr_primer_p1>
		<pcr_primer_p2>CTAGGCCATTTAAAAATAGTTGA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CGAGAAACAAGGTTGAATTTTATCCAAAAAATAATGGGAAACATAGGGTATTTTCAGGCTGATTCTCCATGGCCTAGCTTTTGCAAAAGTTCGTCCACAAGGAAAAATTCTATTTTAGGTTGAAAATTTGGAAAAATTGAGTATTTTCAGGCTGTTTTTCAATGACCTAGGTCTTGCAAAAGTTCGGCCACGGACCGAATTTTACCAAAAAAGGATATTTTTCAACTATTTTTAAATGGCCTAG</canonical_amplicon>
		<polymorphic_amplicon>CGAGAAACAAGGTTGAATTTTATCCAAAAAATAATGGGAAACATAGGGTATTTTCAGGCTGATTCTCCATGGCCTAGCTTTTGCAAAAGTTCGTCCACAAGGAAAAATTCTATTTTAGGTTGAAAATTTGGAAAAATTGAGTATTTTCAGGCTGTTTTTCAATGACSTAGGTCTTGCAAAAGTTCGGCCACGGACCGAATTTTACCAAAAAAGGATATTTTTCAACTATTTTTAAATGGCCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34200</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>313236</contig_pos>
        <strand></strand>
        <context>AAAATTTTCG[G/A]ATTATTTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTGAATTTGAAAAAAAATCTCCGTTTCGAAAACTTTTCAAAAAATTTTCG</left_flank>
        <right_flank>ATTATTTTGAATGGCTAGTTAACTTCGATTCGATCTAACTTCGATCTAAC</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTGAAAATGTTTTCTAATGTTACTATTTTTAAGATAGTGTCTAACCTGTAAGATAGTGTCTGTGGTAAGGAAACTCAAATTTGTTTTTGTAATACTGGCTAGATAGTCTTCCAATGCGAATTCTGAGTTTTAAAATTTGGAATTTAGAAATCGGAGTTTGAAAATCGGGAAATGAAAATTAAAATATTCAAAATTAGATTCCAGACATTCCAATTTTCAAATTCAGACTTTCAATTTCGATATTGTTTCCGATTTTTGATTTTCTGGCTTTCAGATTTTCCTATTTTCAGGTTTTCATCATGGAATTCATAATTTTGAGTTTTTACTTTTAAAAAAATCACAGTTTCAAAAAGTTGATCACATCTTCTGCATTATTTTAAAAAATTAGTATCATTTCAGTTCTGATTGATCCATTTATCCCTTTCTCATTAGAGCGCAATTGTCGAAATTGAATTTGAAAAAAAATCTCCGTTTCGAAAACTTTTCAAAAAATTTTCGGATTATTTTGAATGGCTAGTTAACTTCGATTCGATCTAACTTCGATCTAACTTCGATTTCTTATTAGAGCGCGTTTCTTGGCGGAATTCAAAACGTTGAACTTTTTTTCAAAAAAAATCCAGTTTCAAAAACTTGATGAAATCTTCTGGATTATTTTGACTACTAATGTTCTTTCTATTTCTTCTTTGAAGCACACCTGCCAAAAACTTGCATTTTTAAAAATTGATTTTAAAAAAGCACTGCCGTTTCAAAATATTGACTAAACTTTTCGGATTATTCTGTTACTGGAGTATCGATGAATTGAATACTTTTCATTAGAACGCGTTTTTTGGAAGAAGTCGAAATCTCAATTTTCTCAAAAAAAATCACAATTTCAAAAAGTTGATAAGACCTTCTGGATTTTTGACTACTAAAGTTAGAACCAAGTTATCATTAGCGCGCACTTTCCAAAAATTTGAATTGGAAAAGTTGATTTAAAGGAGGGGGACATGAAAAAATAAT</canonical>
            <polymorphic>GCTGAAAATGTTTTCTAATGTTACTATTTTTAAGATAGTGTCTAACCTGTAAGATAGTGTCTGTGGTAAGGAAACTCAAATTTGTTTTTGTAATACTGGCTAGATAGTCTTCCAATGCGAATTCTGAGTTTTAAAATTTGGAATTTAGAAATCGGAGTTTGAAAATCGGGAAATGAAAATTAAAATATTCAAAATTAGATTCCAGACATTCCAATTTTCAAATTCAGACTTTCAATTTCGATATTGTTTCCGATTTTTGATTTTCTGGCTTTCAGATTTTCCTATTTTCAGGTTTTCATCATGGAATTCATAATTTTGAGTTTTTACTTTTAAAAAAATCACAGTTTCAAAAAGTTGATCACATCTTCTGCATTATTTTAAAAAATTAGTATCATTTCAGTTCTGATTGATCCATTTATCCCTTTCTCATTAGAGCGCAATTGTCGAAATTGAATTTGAAAAAAAATCTCCGTTTCGAAAACTTTTCAAAAAATTTTCGRATTATTTTGAATGGCTAGTTAACTTCGATTCGATCTAACTTCGATCTAACTTCGATTTCTTATTAGAGCGCGTTTCTTGGCGGAATTCAAAACGTTGAACTTTTTTTCAAAAAAAATCCAGTTTCAAAAACTTGATGAAATCTTCTGGATTATTTTGACTACTAATGTTCTTTCTATTTCTTCTTTGAAGCACACCTGCCAAAAACTTGCATTTTTAAAAATTGATTTTAAAAAAGCACTGCCGTTTCAAAATATTGACTAAACTTTTCGGATTATTCTGTTACTGGAGTATCGATGAATTGAATACTTTTCATTAGAACGCGTTTTTTGGAAGAAGTCGAAATCTCAATTTTCTCAAAAAAAATCACAATTTCAAAAAGTTGATAAGACCTTCTGGATTTTTGACTACTAAAGTTAGAACCAAGTTATCATTAGCGCGCACTTTCCAAAAATTTGAATTGGAAAAGTTGATTTAAAGGAGGGGGACATGAAAAAATAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>271 230 130 125 95 72 29 25 23</canonical_bands>
                <polymorphic_bands>366 230 130 125 72 29 25 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCATTTATCCCTTTCTCATTA</pcr_primer_p1>
		<pcr_primer_p2>TCAAAATAATCCAGAAGATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCCATTTATCCCTTTCTCATTAGAGCGCAATTGTCGAAATTGAATTTGAAAAAAAATCTCCGTTTCGAAAACTTTTCAAAAAATTTTCGGATTATTTTGAATGGCTAGTTAACTTCGATTCGATCTAACTTCGATCTAACTTCGATTTCTTATTAGAGCGCGTTTCTTGGCGGAATTCAAAACGTTGAACTTTTTTTCAAAAAAAATCCAGTTTCAAAAACTTGATGAAATCTTCTGGATTATTTTGA</canonical_amplicon>
		<polymorphic_amplicon>ATCCATTTATCCCTTTCTCATTAGAGCGCAATTGTCGAAATTGAATTTGAAAAAAAATCTCCGTTTCGAAAACTTTTCAAAAAATTTTCGRATTATTTTGAATGGCTAGTTAACTTCGATTCGATCTAACTTCGATCTAACTTCGATTTCTTATTAGAGCGCGTTTCTTGGCGGAATTCAAAACGTTGAACTTTTTTTCAAAAAAAATCCAGTTTCAAAAACTTGATGAAATCTTCTGGATTATTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34201</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>315076</contig_pos>
        <strand>+</strand>
        <context>GTCACAAAAA[A/G]TTGAATTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGAGTTTTTCGAAAAAAAAATTTCAAAAAAGGAAAATCGGTCACAAAAA</left_flank>
        <right_flank>TTGAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTCTCATTAGAGCGCACTTGCCCTATCCTACCTGTGTATATGCCGCTAGATTCAGTGGTGCTCCAACGATGAAGTTCAGCACCAGCGTGAACATTTCCACATAGTCCCCAAGAATCGGTTCCGGTGGAAAAATGGGGTCATCAGTGTTGAAGGATTCTGATGACGTTGACGTCATCATCGTCGACGTGGAGATGTTATTGTTGTTGGGAAGCATCTGGAAATATATCATTGGTATTAAAATTATGAAATTTCAGAAAAAAGATAGGAAGCATTGAAAAACGGAAATTCTGCAAAAATAAATAAGAAGTAAATGAAACTGGAAAAAATTGTGAAGGGGAAAAAGGGGCGGAGCTTCAGGAAATTGGAATTTTTCAGCTGTTTCTTGTAGAAATCACCTGTTTTTCGGTACTATTTTCAGGAGTTAGGCATAAAAATCACGTCAGAATTCGGAGTTTTTCGAAAAAAAAATTTCAAAAAAGGAAAATCGGTCACAAAAAATTGAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAA</canonical>
            <polymorphic>TCTTCTCATTAGAGCGCACTTGCCCTATCCTACCTGTGTATATGCCGCTAGATTCAGTGGTGCTCCAACGATGAAGTTCAGCACCAGCGTGAACATTTCCACATAGTCCCCAAGAATCGGTTCCGGTGGAAAAATGGGGTCATCAGTGTTGAAGGATTCTGATGACGTTGACGTCATCATCGTCGACGTGGAGATGTTATTGTTGTTGGGAAGCATCTGGAAATATATCATTGGTATTAAAATTATGAAATTTCAGAAAAAAGATAGGAAGCATTGAAAAACGGAAATTCTGCAAAAATAAATAAGAAGTAAATGAAACTGGAAAAAATTGTGAAGGGGAAAAAGGGGCGGAGCTTCAGGAAATTGGAATTTTTCAGCTGTTTCTTGTAGAAATCACCTGTTTTTCGGTACTATTTTCAGGAGTTAGGCATAAAAATCACGTCAGAATTCGGAGTTTTTCGAAAAAAAAATTTCAAAAAAGGAAAATCGGTCACAAAAARTTGAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>240 125 78 70 54 41 41 37 35 31 31 30 30 24 24 23 22 19 11 8 8 7 6 5</canonical_bands>
                <polymorphic_bands>240 125 78 70 54 41 41 37 35 35 31 31 30 24 24 23 22 19 11 8 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTTTTCAGCTGTTTCTTGTA</pcr_primer_p1>
		<pcr_primer_p2>AATAATGAATTGGTGTTTAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAATTTTTCAGCTGTTTCTTGTAGAAATCACCTGTTTTTCGGTACTATTTTCAGGAGTTAGGCATAAAAATCACGTCAGAATTCGGAGTTTTTCGAAAAAAAAATTTCAAAAAAGGAAAATCGGTCACAAAAAATTGAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATT</canonical_amplicon>
		<polymorphic_amplicon>GAATTTTTCAGCTGTTTCTTGTAGAAATCACCTGTTTTTCGGTACTATTTTCAGGAGTTAGGCATAAAAATCACGTCAGAATTCGGAGTTTTTCGAAAAAAAAATTTCAAAAAAGGAAAATCGGTCACAAAAARTTGAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34202</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>315336</contig_pos>
        <strand>+</strand>
        <context>TGGAATTTCG[A/G]ATWTTAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCG</left_flank>
        <right_flank>ATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGATAGGAAGCATTGAAAAACGGAAATTCTGCAAAAATAAATAAGAAGTAAATGAAACTGGAAAAAATTGTGAAGGGGAAAAAGGGGCGGAGCTTCAGGAAATTGGAATTTTTCAGCTGTTTCTTGTAGAAATCACCTGTTTTTCGGTACTATTTTCAGGAGTTAGGCATAAAAATCACGTCAGAATTCGGAGTTTTTCGAAAAAAAAATTTCAAAAAAGGAAAATCGGTCACAAAAAATTGAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTATTTGAAATTTTCAGCAATAGAGCGCAGTTAGCATTTGTAATTCGTTGAATTTTTTTTCGAAATTCAATACTTTTTTCCTAGAATGTTCTAGAAGAAAAACTATCATTAAAACTCTAAAAAGATCCTTAAGCCACTTTTTGATTGAATAGAAAAAAACGGGGAAAAATGTGAAAAAAATGCCGGATTAGATGAACAAGGTGACGTGAGGGAGAAGAAAAAATAATTCA</canonical>
            <polymorphic>AAGATAGGAAGCATTGAAAAACGGAAATTCTGCAAAAATAAATAAGAAGTAAATGAAACTGGAAAAAATTGTGAAGGGGAAAAAGGGGCGGAGCTTCAGGAAATTGGAATTTTTCAGCTGTTTCTTGTAGAAATCACCTGTTTTTCGGTACTATTTTCAGGAGTTAGGCATAAAAATCACGTCAGAATTCGGAGTTTTTCGAAAAAAAAATTTCAAAAAAGGAAAATCGGTCACAAAAAATTGAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGRATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTATTTGAAATTTTCAGCAATAGAGCGCAGTTAGCATTTGTAATTCGTTGAATTTTTTTTCGAAATTCAATACTTTTTTCCTAGAATGTTCTAGAAGAAAAACTATCATTAAAACTCTAAAAAGATCCTTAAGCCACTTTTTGATTGAATAGAAAAAAACGGGGAAAAATGTGAAAAAAATGCCGGATTAGATGAACAAGGTGACGTGAGGGAGAAGAAAAAATAATTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>167 163 154 82 78 63 55 50 42 35 25 24 23 13 11 8 7</canonical_bands>
                <polymorphic_bands>167 163 154 82 78 63 55 50 42 35 25 24 23 18 13 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>333 267 199 170 31</canonical_bands>
                <polymorphic_bands>364 267 199 170</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>302 267 200 169 31 31</canonical_bands>
                <polymorphic_bands>302 267 200 169 62</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>163 161 78 70 54 41 41 35 33 31 31 30 30 25 24 24 23 22 19 13 11 9 8 7 6 6 5</canonical_bands>
                <polymorphic_bands>163 161 78 70 54 41 41 35 33 31 31 30 30 25 24 24 23 22 19 18 13 9 8 6 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATTATTTAGTCCATCAATGTG</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTCGCTCCACTGATA</pcr_primer_p2>
		<pcr_amplicon_size>276</pcr_amplicon_size>
		<canonical_amplicon>TCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>TCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGRATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34203</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>315339</contig_pos>
        <strand>+</strand>
        <context>AATTTCGRAT[A/T]TTAAAAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAAT</left_flank>
        <right_flank>TTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGGAAGCATTGAAAAACGGAAATTCTGCAAAAATAAATAAGAAGTAAATGAAACTGGAAAAAATTGTGAAGGGGAAAAAGGGGCGGAGCTTCAGGAAATTGGAATTTTTCAGCTGTTTCTTGTAGAAATCACCTGTTTTTCGGTACTATTTTCAGGAGTTAGGCATAAAAATCACGTCAGAATTCGGAGTTTTTCGAAAAAAAAATTTCAAAAAAGGAAAATCGGTCACAAAAAATTGAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTATTTGAAATTTTCAGCAATAGAGCGCAGTTAGCATTTGTAATTCGTTGAATTTTTTTTCGAAATTCAATACTTTTTTCCTAGAATGTTCTAGAAGAAAAACTATCATTAAAACTCTAAAAAGATCCTTAAGCCACTTTTTGATTGAATAGAAAAAAACGGGGAAAAATGTGAAAAAAATGCCGGATTAGATGAACAAGGTGACGTGAGGGAGAAGAAAAAATAATTCAAGT</canonical>
            <polymorphic>ATAGGAAGCATTGAAAAACGGAAATTCTGCAAAAATAAATAAGAAGTAAATGAAACTGGAAAAAATTGTGAAGGGGAAAAAGGGGCGGAGCTTCAGGAAATTGGAATTTTTCAGCTGTTTCTTGTAGAAATCACCTGTTTTTCGGTACTATTTTCAGGAGTTAGGCATAAAAATCACGTCAGAATTCGGAGTTTTTCGAAAAAAAAATTTCAAAAAAGGAAAATCGGTCACAAAAAATTGAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATWTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTATTTGAAATTTTCAGCAATAGAGCGCAGTTAGCATTTGTAATTCGTTGAATTTTTTTTCGAAATTCAATACTTTTTTCCTAGAATGTTCTAGAAGAAAAACTATCATTAAAACTCTAAAAAGATCCTTAAGCCACTTTTTGATTGAATAGAAAAAAACGGGGAAAAATGTGAAAAAAATGCCGGATTAGATGAACAAGGTGACGTGAGGGAGAAGAAAAAATAATTCAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>170 163 154 82 78 63 55 50 42 35 24 23 22 13 11 8 7</canonical_bands>
                <polymorphic_bands>170 163 154 82 78 63 55 50 42 35 24 23 22 18 13 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>163 161 78 70 54 41 41 35 33 31 31 30 30 24 24 23 22 22 19 13 11 9 9 8 7 6 5</canonical_bands>
                <polymorphic_bands>163 161 78 70 54 41 41 35 33 31 31 30 30 24 24 23 22 22 19 18 13 9 9 8 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATTATTTAGTCCATCAATGTG</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTCGCTCCACTGATA</pcr_primer_p2>
		<pcr_amplicon_size>276</pcr_amplicon_size>
		<canonical_amplicon>TCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>TCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATWTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34204</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>315351</contig_pos>
        <strand>+</strand>
        <context>TAAAAAAATT[C/T]CCTCTAGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATT</left_flank>
        <right_flank>CCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAACGGAAATTCTGCAAAAATAAATAAGAAGTAAATGAAACTGGAAAAAATTGTGAAGGGGAAAAAGGGGCGGAGCTTCAGGAAATTGGAATTTTTCAGCTGTTTCTTGTAGAAATCACCTGTTTTTCGGTACTATTTTCAGGAGTTAGGCATAAAAATCACGTCAGAATTCGGAGTTTTTCGAAAAAAAAATTTCAAAAAAGGAAAATCGGTCACAAAAAATTGAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTATTTGAAATTTTCAGCAATAGAGCGCAGTTAGCATTTGTAATTCGTTGAATTTTTTTTCGAAATTCAATACTTTTTTCCTAGAATGTTCTAGAAGAAAAACTATCATTAAAACTCTAAAAAGATCCTTAAGCCACTTTTTGATTGAATAGAAAAAAACGGGGAAAAATGTGAAAAAAATGCCGGATTAGATGAACAAGGTGACGTGAGGGAGAAGAAAAAATAATTCAAGTTGCCTCCTATTT</canonical>
            <polymorphic>GAAAAACGGAAATTCTGCAAAAATAAATAAGAAGTAAATGAAACTGGAAAAAATTGTGAAGGGGAAAAAGGGGCGGAGCTTCAGGAAATTGGAATTTTTCAGCTGTTTCTTGTAGAAATCACCTGTTTTTCGGTACTATTTTCAGGAGTTAGGCATAAAAATCACGTCAGAATTCGGAGTTTTTCGAAAAAAAAATTTCAAAAAAGGAAAATCGGTCACAAAAAATTGAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATTYCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTATTTGAAATTTTCAGCAATAGAGCGCAGTTAGCATTTGTAATTCGTTGAATTTTTTTTCGAAATTCAATACTTTTTTCCTAGAATGTTCTAGAAGAAAAACTATCATTAAAACTCTAAAAAGATCCTTAAGCCACTTTTTGATTGAATAGAAAAAAACGGGGAAAAATGTGAAAAAAATGCCGGATTAGATGAACAAGGTGACGTGAGGGAGAAGAAAAAATAATTCAAGTTGCCTCCTATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>182 163 154 82 78 63 55 50 42 35 24 23 13 11 10 8 7</canonical_bands>
                <polymorphic_bands>182 163 154 82 78 66 63 50 42 35 24 23 13 10 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTATTCGAAGAAGAAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>TCAAAAATCAGTTTGACGAATA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>TTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGA</canonical_amplicon>
		<polymorphic_amplicon>TTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATTYCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34205</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>315437</contig_pos>
        <strand>+</strand>
        <context>TTTTTGAAAA[A/C]CTATCAGTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAA</left_flank>
        <right_flank>CTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGGAATTTTTCAGCTGTTTCTTGTAGAAATCACCTGTTTTTCGGTACTATTTTCAGGAGTTAGGCATAAAAATCACGTCAGAATTCGGAGTTTTTCGAAAAAAAAATTTCAAAAAAGGAAAATCGGTCACAAAAAATTGAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTATTTGAAATTTTCAGCAATAGAGCGCAGTTAGCATTTGTAATTCGTTGAATTTTTTTTCGAAATTCAATACTTTTTTCCTAGAATGTTCTAGAAGAAAAACTATCATTAAAACTCTAAAAAGATCCTTAAGCCACTTTTTGATTGAATAGAAAAAAACGGGGAAAAATGTGAAAAAAATGCCGGATTAGATGAACAAGGTGACGTGAGGGAGAAGAAAAAATAATTCAAGTTGCCTCCTATTTCTCGTGAAGAGTCAAAAGAGAGGAAATGAAAAAAGAAGAAGAAGAAAATAAACTCCAAGTTTGACCGATTAGACAAGATTATTCCG</canonical>
            <polymorphic>AATTGGAATTTTTCAGCTGTTTCTTGTAGAAATCACCTGTTTTTCGGTACTATTTTCAGGAGTTAGGCATAAAAATCACGTCAGAATTCGGAGTTTTTCGAAAAAAAAATTTCAAAAAAGGAAAATCGGTCACAAAAAATTGAATTTCAGATCTCAATGTTTTGAAATAGCAAATTATTTTTTAAGTTGTTTTTTTTTTTCAATAGAGCGCGTTTTTCACATTTTTCCCACCACTAAACACCAATTCATTATTTAGTCCATCAATGTGTATTAAATAATATCTAGTTGAAACATTAAATTTGGAAATCAAAGTTTTGAAAAATTCAAATGCTCTCTACTGAGAATTATTCAAATATCATTCTATTCGAAGAAGAAAAACAGTAAATTTTGGAATTTCGAATTTTAAAAAAATTTCCTCTAGAAAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAMCTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTATTTGAAATTTTCAGCAATAGAGCGCAGTTAGCATTTGTAATTCGTTGAATTTTTTTTCGAAATTCAATACTTTTTTCCTAGAATGTTCTAGAAGAAAAACTATCATTAAAACTCTAAAAAGATCCTTAAGCCACTTTTTGATTGAATAGAAAAAAACGGGGAAAAATGTGAAAAAAATGCCGGATTAGATGAACAAGGTGACGTGAGGGAGAAGAAAAAATAATTCAAGTTGCCTCCTATTTCTCGTGAAGAGTCAAAAGAGAGGAAATGAAAAAAGAAGAAGAAGAAAATAAACTCCAAGTTTGACCGATTAGACAAGATTATTCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCGAACGAATTACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATAATCGCTTTTGAGTGTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAACTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTAT</canonical_amplicon>
		<polymorphic_amplicon>AAAATCGAACGAATTACAAAAAAGTTGGATTCCAAATCTCAAAATTCTAAAACGGTCAAAAAATTGATTTTTGAAAAMCTATCAGTGGAGCGAATTTTCTCATTTTAATATGAAAAATATGTAACGAATGTACTATTTTCTCCATATCAGTTTTGTTCATAAAAACAAAATAAAACAGTAAATATTCGTCAAACTGATTTTTGAATAGAAAAACCAAGTGCGCTCTATTGAGAACACTCAAAAGCGATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34206</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>367035</contig_pos>
        <strand></strand>
        <context>agagctcaaa[A/G]tttggctcaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACAATCCGAAATACGAAAAAAATGGAAAAAATTATATTGAGAGCTCAAA</left_flank>
        <right_flank>TTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTCCGGGCCGGGCC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAATTTTCAAAATTGTCCAATCGTGATAAAAATTGATATCACGAGCTAAAATCACATGAAAATACCAATTCTGCATCTGGAATCCGAAAATTTTGAATTTTGAAAATTTTTTTTCGAAAATTCGAAGAAATTTCGCCTGTTTCATTTAAATCATGAAAATTTGAAATTTCATCAGAGGATAATAGATGCTGCCCTCTCCAAAAATAGTCAAATTTTCCAAAAAACCATACTTGTAACGGGCCTGGCCGGGCTTTTTCCGGAATTTCGGAGGCCCGGCCCGGCCCGGCGGGCCCGTCATTTCACTAGTTTTGAAATTTTCAAAAAACACAAGGGGTGATTTTTGTGATTTTTATGTGATTTTATGTGATTTTATGTGATTTTTATGTGATTTTTTTCGACCAAAAAATTTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACAGACAAACAATCCGAAATACGAAAAAAATGGAAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTCCGGGCCGGGCCCGGGCCTTGAAAATTTCCTCAGGCCCGGCCCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGCAAAAAACTAAATTTTGAAAATCTCAAAATTTCAATTTTTCAGCAAATGGATTGTTCTGGTGGCTCGTTTGAAACCGCGAATTCCGGAAGTTTTGATATGAATATGATGAGCGCTCATTCTTCATTTGATCAGGTTAGTTTTGAATTACTGTATCTGGAAAAGGCGGGTAATTGAATTTTTCGAATTTTCTGAATTTTCACGAAATTCTGTTTCACCAACTTTTAAAATTTTTTGCATGTTTTAGAATTTTTAGTTGACGTATTTGAATAACTTCTGATAAGACAAAATTGAACATTTCAAATTCTAGAAAAGGCGGGAATTTGAATTTTTTGAAATTTTCGAAATATTTTCCGTTCCACCGACTTTGGAACTTTT</canonical>
            <polymorphic>GAAAATTTTCAAAATTGTCCAATCGTGATAAAAATTGATATCACGAGCTAAAATCACATGAAAATACCAATTCTGCATCTGGAATCCGAAAATTTTGAATTTTGAAAATTTTTTTTCGAAAATTCGAAGAAATTTCGCCTGTTTCATTTAAATCATGAAAATTTGAAATTTCATCAGAGGATAATAGATGCTGCCCTCTCCAAAAATAGTCAAATTTTCCAAAAAACCATACTTGTAACGGGCCTGGCCGGGCTTTTTCCGGAATTTCGGAGGCCCGGCCCGGCCCGGCGGGCCCGTCATTTCACTAGTTTTGAAATTTTCAAAAAACACAAGGGGTGATTTTTGTGATTTTTATGTGATTTTATGTGATTTTATGTGATTTTTATGTGATTTTTTTCGACCAAAAAATTTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACAGACAAACAATCCGAAATACGAAAAAAATGGAAAAAATTATATTGAGAGCTCAAARTTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTCCGGGCCGGGCCCGGGCCTTGAAAATTTCCTCAGGCCCGGCCCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGCAAAAAACTAAATTTTGAAAATCTCAAAATTTCAATTTTTCAGCAAATGGATTGTTCTGGTGGCTCGTTTGAAACCGCGAATTCCGGAAGTTTTGATATGAATATGATGAGCGCTCATTCTTCATTTGATCAGGTTAGTTTTGAATTACTGTATCTGGAAAAGGCGGGTAATTGAATTTTTCGAATTTTCTGAATTTTCACGAAATTCTGTTTCACCAACTTTTAAAATTTTTTGCATGTTTTAGAATTTTTAGTTGACGTATTTGAATAACTTCTGATAAGACAAAATTGAACATTTCAAATTCTAGAAAAGGCGGGAATTTGAATTTTTTGAAATTTTCGAAATATTTTCCGTTCCACCGACTTTGGAACTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>95 92 92 87 55 52 52 50 48 46 43 42 29 25 23 20 19 18 17 14 11 10 10 9 9 9 7 7 6 3</canonical_bands>
                <polymorphic_bands>112 95 92 87 55 52 52 50 48 46 43 42 29 25 23 19 18 17 14 11 10 10 9 9 9 7 7 6 3</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>92 73 64 52 50 48 46 46 43 42 41 36 29 26 25 23 22 20 20 19 19 18 17 14 14 11 10 10 9 9 9 9 7 7 6 6 5 3</canonical_bands>
                <polymorphic_bands>92 73 64 52 50 48 46 46 43 42 41 39 36 29 26 25 23 22 20 19 18 17 14 14 11 10 10 9 9 9 9 7 7 6 6 5 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGATCAGACAGACAAACAATC</pcr_primer_p1>
		<pcr_primer_p2>AGAACAATCCATTTGCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTGATCAGACAGACAAACAATCCGAAATACGAAAAAAATGGAAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTCCGGGCCGGGCCCGGGCCTTGAAAATTTCCTCAGGCCCGGCCCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGCAAAAAACTAAATTTTGAAAATCTCAAAATTTCAATTTTTCAGCAAATGGATTGTTCT</canonical_amplicon>
		<polymorphic_amplicon>TTGATCAGACAGACAAACAATCCGAAATACGAAAAAAATGGAAAAAATTATATTGAGAGCTCAAARTTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTCCGGGCCGGGCCCGGGCCTTGAAAATTTCCTCAGGCCCGGCCCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGCAAAAAACTAAATTTTGAAAATCTCAAAATTTCAATTTTTCAGCAAATGGATTGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34207</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>367061</contig_pos>
        <strand></strand>
        <context>cagaattttt[G/T]acaccgggcc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTT</left_flank>
        <right_flank>ACACCGGGCCTTCCGGGCCGGGCCCGGGCCTTGAAAATTTCCTCAGGCCC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAAAAATTGATATCACGAGCTAAAATCACATGAAAATACCAATTCTGCATCTGGAATCCGAAAATTTTGAATTTTGAAAATTTTTTTTCGAAAATTCGAAGAAATTTCGCCTGTTTCATTTAAATCATGAAAATTTGAAATTTCATCAGAGGATAATAGATGCTGCCCTCTCCAAAAATAGTCAAATTTTCCAAAAAACCATACTTGTAACGGGCCTGGCCGGGCTTTTTCCGGAATTTCGGAGGCCCGGCCCGGCCCGGCGGGCCCGTCATTTCACTAGTTTTGAAATTTTCAAAAAACACAAGGGGTGATTTTTGTGATTTTTATGTGATTTTATGTGATTTTATGTGATTTTTATGTGATTTTTTTCGACCAAAAAATTTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACAGACAAACAATCCGAAATACGAAAAAAATGGAAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTCCGGGCCGGGCCCGGGCCTTGAAAATTTCCTCAGGCCCGGCCCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGCAAAAAACTAAATTTTGAAAATCTCAAAATTTCAATTTTTCAGCAAATGGATTGTTCTGGTGGCTCGTTTGAAACCGCGAATTCCGGAAGTTTTGATATGAATATGATGAGCGCTCATTCTTCATTTGATCAGGTTAGTTTTGAATTACTGTATCTGGAAAAGGCGGGTAATTGAATTTTTCGAATTTTCTGAATTTTCACGAAATTCTGTTTCACCAACTTTTAAAATTTTTTGCATGTTTTAGAATTTTTAGTTGACGTATTTGAATAACTTCTGATAAGACAAAATTGAACATTTCAAATTCTAGAAAAGGCGGGAATTTGAATTTTTTGAAATTTTCGAAATATTTTCCGTTCCACCGACTTTGGAACTTTTCAGGAATTTAAAAAGATTTTTGATGA</canonical>
            <polymorphic>GATAAAAATTGATATCACGAGCTAAAATCACATGAAAATACCAATTCTGCATCTGGAATCCGAAAATTTTGAATTTTGAAAATTTTTTTTCGAAAATTCGAAGAAATTTCGCCTGTTTCATTTAAATCATGAAAATTTGAAATTTCATCAGAGGATAATAGATGCTGCCCTCTCCAAAAATAGTCAAATTTTCCAAAAAACCATACTTGTAACGGGCCTGGCCGGGCTTTTTCCGGAATTTCGGAGGCCCGGCCCGGCCCGGCGGGCCCGTCATTTCACTAGTTTTGAAATTTTCAAAAAACACAAGGGGTGATTTTTGTGATTTTTATGTGATTTTATGTGATTTTATGTGATTTTTATGTGATTTTTTTCGACCAAAAAATTTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACAGACAAACAATCCGAAATACGAAAAAAATGGAAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTKACACCGGGCCTTCCGGGCCGGGCCCGGGCCTTGAAAATTTCCTCAGGCCCGGCCCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGCAAAAAACTAAATTTTGAAAATCTCAAAATTTCAATTTTTCAGCAAATGGATTGTTCTGGTGGCTCGTTTGAAACCGCGAATTCCGGAAGTTTTGATATGAATATGATGAGCGCTCATTCTTCATTTGATCAGGTTAGTTTTGAATTACTGTATCTGGAAAAGGCGGGTAATTGAATTTTTCGAATTTTCTGAATTTTCACGAAATTCTGTTTCACCAACTTTTAAAATTTTTTGCATGTTTTAGAATTTTTAGTTGACGTATTTGAATAACTTCTGATAAGACAAAATTGAACATTTCAAATTCTAGAAAAGGCGGGAATTTGAATTTTTTGAAATTTTCGAAATATTTTCCGTTCCACCGACTTTGGAACTTTTCAGGAATTTAAAAAGATTTTTGATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGATCAGACAGACAAACAATC</pcr_primer_p1>
		<pcr_primer_p2>AGAACAATCCATTTGCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTGATCAGACAGACAAACAATCCGAAATACGAAAAAAATGGAAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTCCGGGCCGGGCCCGGGCCTTGAAAATTTCCTCAGGCCCGGCCCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGCAAAAAACTAAATTTTGAAAATCTCAAAATTTCAATTTTTCAGCAAATGGATTGTTCT</canonical_amplicon>
		<polymorphic_amplicon>TTGATCAGACAGACAAACAATCCGAAATACGAAAAAAATGGAAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTKACACCGGGCCTTCCGGGCCGGGCCCGGGCCTTGAAAATTTCCTCAGGCCCGGCCCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGCAAAAAACTAAATTTTGAAAATCTCAAAATTTCAATTTTTCAGCAAATGGATTGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34208</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>367074</contig_pos>
        <strand></strand>
        <context>accgggcctt[C/T]cgggccgggc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTT</left_flank>
        <right_flank>CGGGCCGGGCCCGGGCCTTGAAAATTTCCTCAGGCCCGGCCCGGGCCCGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCACGAGCTAAAATCACATGAAAATACCAATTCTGCATCTGGAATCCGAAAATTTTGAATTTTGAAAATTTTTTTTCGAAAATTCGAAGAAATTTCGCCTGTTTCATTTAAATCATGAAAATTTGAAATTTCATCAGAGGATAATAGATGCTGCCCTCTCCAAAAATAGTCAAATTTTCCAAAAAACCATACTTGTAACGGGCCTGGCCGGGCTTTTTCCGGAATTTCGGAGGCCCGGCCCGGCCCGGCGGGCCCGTCATTTCACTAGTTTTGAAATTTTCAAAAAACACAAGGGGTGATTTTTGTGATTTTTATGTGATTTTATGTGATTTTATGTGATTTTTATGTGATTTTTTTCGACCAAAAAATTTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACAGACAAACAATCCGAAATACGAAAAAAATGGAAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTCCGGGCCGGGCCCGGGCCTTGAAAATTTCCTCAGGCCCGGCCCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGCAAAAAACTAAATTTTGAAAATCTCAAAATTTCAATTTTTCAGCAAATGGATTGTTCTGGTGGCTCGTTTGAAACCGCGAATTCCGGAAGTTTTGATATGAATATGATGAGCGCTCATTCTTCATTTGATCAGGTTAGTTTTGAATTACTGTATCTGGAAAAGGCGGGTAATTGAATTTTTCGAATTTTCTGAATTTTCACGAAATTCTGTTTCACCAACTTTTAAAATTTTTTGCATGTTTTAGAATTTTTAGTTGACGTATTTGAATAACTTCTGATAAGACAAAATTGAACATTTCAAATTCTAGAAAAGGCGGGAATTTGAATTTTTTGAAATTTTCGAAATATTTTCCGTTCCACCGACTTTGGAACTTTTCAGGAATTTAAAAAGATTTTTGATGACTGTTTCCGTAAT</canonical>
            <polymorphic>ATCACGAGCTAAAATCACATGAAAATACCAATTCTGCATCTGGAATCCGAAAATTTTGAATTTTGAAAATTTTTTTTCGAAAATTCGAAGAAATTTCGCCTGTTTCATTTAAATCATGAAAATTTGAAATTTCATCAGAGGATAATAGATGCTGCCCTCTCCAAAAATAGTCAAATTTTCCAAAAAACCATACTTGTAACGGGCCTGGCCGGGCTTTTTCCGGAATTTCGGAGGCCCGGCCCGGCCCGGCGGGCCCGTCATTTCACTAGTTTTGAAATTTTCAAAAAACACAAGGGGTGATTTTTGTGATTTTTATGTGATTTTATGTGATTTTATGTGATTTTTATGTGATTTTTTTCGACCAAAAAATTTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACAGACAAACAATCCGAAATACGAAAAAAATGGAAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTYCGGGCCGGGCCCGGGCCTTGAAAATTTCCTCAGGCCCGGCCCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGCAAAAAACTAAATTTTGAAAATCTCAAAATTTCAATTTTTCAGCAAATGGATTGTTCTGGTGGCTCGTTTGAAACCGCGAATTCCGGAAGTTTTGATATGAATATGATGAGCGCTCATTCTTCATTTGATCAGGTTAGTTTTGAATTACTGTATCTGGAAAAGGCGGGTAATTGAATTTTTCGAATTTTCTGAATTTTCACGAAATTCTGTTTCACCAACTTTTAAAATTTTTTGCATGTTTTAGAATTTTTAGTTGACGTATTTGAATAACTTCTGATAAGACAAAATTGAACATTTCAAATTCTAGAAAAGGCGGGAATTTGAATTTTTTGAAATTTTCGAAATATTTTCCGTTCCACCGACTTTGGAACTTTTCAGGAATTTAAAAAGATTTTTGATGACTGTTTCCGTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>433 246 210 26 25 20 9 6 5 5 5 5 5</canonical_bands>
                <polymorphic_bands>433 246 210 26 25 20 14 6 5 5 5 5</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>433 246 205 26 25 20 9 6 5 5 5 5 5 5</canonical_bands>
                <polymorphic_bands>433 246 205 26 25 20 14 6 5 5 5 5 5</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>331 245 209 102 25 16 15 11 9 6 6 5 5 5 5 5</canonical_bands>
                <polymorphic_bands>331 245 209 102 25 16 15 14 11 6 6 5 5 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGATCAGACAGACAAACAATC</pcr_primer_p1>
		<pcr_primer_p2>AGAACAATCCATTTGCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTGATCAGACAGACAAACAATCCGAAATACGAAAAAAATGGAAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTCCGGGCCGGGCCCGGGCCTTGAAAATTTCCTCAGGCCCGGCCCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGCAAAAAACTAAATTTTGAAAATCTCAAAATTTCAATTTTTCAGCAAATGGATTGTTCT</canonical_amplicon>
		<polymorphic_amplicon>TTGATCAGACAGACAAACAATCCGAAATACGAAAAAAATGGAAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTYCGGGCCGGGCCCGGGCCTTGAAAATTTCCTCAGGCCCGGCCCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGCAAAAAACTAAATTTTGAAAATCTCAAAATTTCAATTTTTCAGCAAATGGATTGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34209</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>367192</contig_pos>
        <strand></strand>
        <context>CTCAAAATTT[C/T]AATTTTTCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGAATTTTACAAGTATGCAAAAAACTAAATTTTGAAAATCTCAAAATTT</left_flank>
        <right_flank>AATTTTTCAGCAAATGGATTGTTCTGGTGGCTCGTTTGAAACCGCGAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTTGAAATTTCATCAGAGGATAATAGATGCTGCCCTCTCCAAAAATAGTCAAATTTTCCAAAAAACCATACTTGTAACGGGCCTGGCCGGGCTTTTTCCGGAATTTCGGAGGCCCGGCCCGGCCCGGCGGGCCCGTCATTTCACTAGTTTTGAAATTTTCAAAAAACACAAGGGGTGATTTTTGTGATTTTTATGTGATTTTATGTGATTTTATGTGATTTTTATGTGATTTTTTTCGACCAAAAAATTTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACAGACAAACAATCCGAAATACGAAAAAAATGGAAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTCCGGGCCGGGCCCGGGCCTTGAAAATTTCCTCAGGCCCGGCCCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGCAAAAAACTAAATTTTGAAAATCTCAAAATTTCAATTTTTCAGCAAATGGATTGTTCTGGTGGCTCGTTTGAAACCGCGAATTCCGGAAGTTTTGATATGAATATGATGAGCGCTCATTCTTCATTTGATCAGGTTAGTTTTGAATTACTGTATCTGGAAAAGGCGGGTAATTGAATTTTTCGAATTTTCTGAATTTTCACGAAATTCTGTTTCACCAACTTTTAAAATTTTTTGCATGTTTTAGAATTTTTAGTTGACGTATTTGAATAACTTCTGATAAGACAAAATTGAACATTTCAAATTCTAGAAAAGGCGGGAATTTGAATTTTTTGAAATTTTCGAAATATTTTCCGTTCCACCGACTTTGGAACTTTTCAGGAATTTAAAAAGATTTTTGATGACTGTTTCCGTAATAGAAAATCAACATTTTTCCAGGGAACCGCTGGCATCAACATTGCCACACCAGAAATTTTGGCGACCATGCCGCCAAAATCAGTAATTCAAGACGATATTCGTGGCGGAAGTGGACGAT</canonical>
            <polymorphic>AAAATTTGAAATTTCATCAGAGGATAATAGATGCTGCCCTCTCCAAAAATAGTCAAATTTTCCAAAAAACCATACTTGTAACGGGCCTGGCCGGGCTTTTTCCGGAATTTCGGAGGCCCGGCCCGGCCCGGCGGGCCCGTCATTTCACTAGTTTTGAAATTTTCAAAAAACACAAGGGGTGATTTTTGTGATTTTTATGTGATTTTATGTGATTTTATGTGATTTTTATGTGATTTTTTTCGACCAAAAAATTTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACAGACAAACAATCCGAAATACGAAAAAAATGGAAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTCCGGGCCGGGCCCGGGCCTTGAAAATTTCCTCAGGCCCGGCCCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGCAAAAAACTAAATTTTGAAAATCTCAAAATTTYAATTTTTCAGCAAATGGATTGTTCTGGTGGCTCGTTTGAAACCGCGAATTCCGGAAGTTTTGATATGAATATGATGAGCGCTCATTCTTCATTTGATCAGGTTAGTTTTGAATTACTGTATCTGGAAAAGGCGGGTAATTGAATTTTTCGAATTTTCTGAATTTTCACGAAATTCTGTTTCACCAACTTTTAAAATTTTTTGCATGTTTTAGAATTTTTAGTTGACGTATTTGAATAACTTCTGATAAGACAAAATTGAACATTTCAAATTCTAGAAAAGGCGGGAATTTGAATTTTTTGAAATTTTCGAAATATTTTCCGTTCCACCGACTTTGGAACTTTTCAGGAATTTAAAAAGATTTTTGATGACTGTTTCCGTAATAGAAAATCAACATTTTTCCAGGGAACCGCTGGCATCAACATTGCCACACCAGAAATTTTGGCGACCATGCCGCCAAAATCAGTAATTCAAGACGATATTCGTGGCGGAAGTGGACGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAATCCGAAATACGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GCTCATCATATTCATATCAAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>286</pcr_amplicon_size>
		<canonical_amplicon>ACAATCCGAAATACGAAAAAAATGGAAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTCCGGGCCGGGCCCGGGCCTTGAAAATTTCCTCAGGCCCGGCCCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGCAAAAAACTAAATTTTGAAAATCTCAAAATTTCAATTTTTCAGCAAATGGATTGTTCTGGTGGCTCGTTTGAAACCGCGAATTCCGGAAGTTTTGATATGAATATGATGAGC</canonical_amplicon>
		<polymorphic_amplicon>ACAATCCGAAATACGAAAAAAATGGAAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTCCGGGCCGGGCCCGGGCCTTGAAAATTTCCTCAGGCCCGGCCCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGCAAAAAACTAAATTTTGAAAATCTCAAAATTTYAATTTTTCAGCAAATGGATTGTTCTGGTGGCTCGTTTGAAACCGCGAATTCCGGAAGTTTTGATATGAATATGATGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34210</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>367330</contig_pos>
        <strand></strand>
        <context>AAGGCGGGTA[A/C]TTGAATTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCATTTGATCAGGTTAGTTTTGAATTACTGTATCTGGAAAAGGCGGGTA</left_flank>
        <right_flank>TTGAATTTTTCGAATTTTCTGAATTTTCACGAAATTCTGTTTCACCAACT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCATTTCACTAGTTTTGAAATTTTCAAAAAACACAAGGGGTGATTTTTGTGATTTTTATGTGATTTTATGTGATTTTATGTGATTTTTATGTGATTTTTTTCGACCAAAAAATTTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACAGACAAACAATCCGAAATACGAAAAAAATGGAAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTCCGGGCCGGGCCCGGGCCTTGAAAATTTCCTCAGGCCCGGCCCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGCAAAAAACTAAATTTTGAAAATCTCAAAATTTCAATTTTTCAGCAAATGGATTGTTCTGGTGGCTCGTTTGAAACCGCGAATTCCGGAAGTTTTGATATGAATATGATGAGCGCTCATTCTTCATTTGATCAGGTTAGTTTTGAATTACTGTATCTGGAAAAGGCGGGTAATTGAATTTTTCGAATTTTCTGAATTTTCACGAAATTCTGTTTCACCAACTTTTAAAATTTTTTGCATGTTTTAGAATTTTTAGTTGACGTATTTGAATAACTTCTGATAAGACAAAATTGAACATTTCAAATTCTAGAAAAGGCGGGAATTTGAATTTTTTGAAATTTTCGAAATATTTTCCGTTCCACCGACTTTGGAACTTTTCAGGAATTTAAAAAGATTTTTGATGACTGTTTCCGTAATAGAAAATCAACATTTTTCCAGGGAACCGCTGGCATCAACATTGCCACACCAGAAATTTTGGCGACCATGCCGCCAAAATCAGTAATTCAAGACGATATTCGTGGCGGAAGTGGACGATTCTCGTTGGTTCGGAAACGAGGAAGATCTGAAGTTTGGAATCTGTTTGGGCAGGTTGGTCCGAGAAAATTTTTTTTTGAAAAAAATTTCTGCTTCAAATAGTTCTGAAATTTCTTGGAATTCCATGATTTTTAGTGCT</canonical>
            <polymorphic>GTCATTTCACTAGTTTTGAAATTTTCAAAAAACACAAGGGGTGATTTTTGTGATTTTTATGTGATTTTATGTGATTTTATGTGATTTTTATGTGATTTTTTTCGACCAAAAAATTTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACAGACAAACAATCCGAAATACGAAAAAAATGGAAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTCCGGGCCGGGCCCGGGCCTTGAAAATTTCCTCAGGCCCGGCCCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGCAAAAAACTAAATTTTGAAAATCTCAAAATTTCAATTTTTCAGCAAATGGATTGTTCTGGTGGCTCGTTTGAAACCGCGAATTCCGGAAGTTTTGATATGAATATGATGAGCGCTCATTCTTCATTTGATCAGGTTAGTTTTGAATTACTGTATCTGGAAAAGGCGGGTAMTTGAATTTTTCGAATTTTCTGAATTTTCACGAAATTCTGTTTCACCAACTTTTAAAATTTTTTGCATGTTTTAGAATTTTTAGTTGACGTATTTGAATAACTTCTGATAAGACAAAATTGAACATTTCAAATTCTAGAAAAGGCGGGAATTTGAATTTTTTGAAATTTTCGAAATATTTTCCGTTCCACCGACTTTGGAACTTTTCAGGAATTTAAAAAGATTTTTGATGACTGTTTCCGTAATAGAAAATCAACATTTTTCCAGGGAACCGCTGGCATCAACATTGCCACACCAGAAATTTTGGCGACCATGCCGCCAAAATCAGTAATTCAAGACGATATTCGTGGCGGAAGTGGACGATTCTCGTTGGTTCGGAAACGAGGAAGATCTGAAGTTTGGAATCTGTTTGGGCAGGTTGGTCCGAGAAAATTTTTTTTTGAAAAAAATTTCTGCTTCAAATAGTTCTGAAATTTCTTGGAATTCCATGATTTTTAGTGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>101 92 88 73 64 48 46 46 43 41 30 26 25 24 23 21 20 19 19 19 18 17 17 14 11 10 10 9 9 6 6 5</canonical_bands>
                <polymorphic_bands>101 92 88 73 64 48 46 46 43 41 31 30 25 24 23 21 20 19 19 19 18 17 17 14 11 10 10 9 9 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCAGCAAATGGATTGT</pcr_primer_p1>
		<pcr_primer_p2>CAGAAGTTATTCAAATACGTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCAGCAAATGGATTGTTCTGGTGGCTCGTTTGAAACCGCGAATTCCGGAAGTTTTGATATGAATATGATGAGCGCTCATTCTTCATTTGATCAGGTTAGTTTTGAATTACTGTATCTGGAAAAGGCGGGTAATTGAATTTTTCGAATTTTCTGAATTTTCACGAAATTCTGTTTCACCAACTTTTAAAATTTTTTGCATGTTTTAGAATTTTTAGTTGACGTATTTGAATAACTTCTG</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCAGCAAATGGATTGTTCTGGTGGCTCGTTTGAAACCGCGAATTCCGGAAGTTTTGATATGAATATGATGAGCGCTCATTCTTCATTTGATCAGGTTAGTTTTGAATTACTGTATCTGGAAAAGGCGGGTAMTTGAATTTTTCGAATTTTCTGAATTTTCACGAAATTCTGTTTCACCAACTTTTAAAATTTTTTGCATGTTTTAGAATTTTTAGTTGACGTATTTGAATAACTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34211</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>367349</contig_pos>
        <strand></strand>
        <context>TTCGAATTTT[C/T]TGAATTTTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGAATTACTGTATCTGGAAAAGGCGGGTAATTGAATTTTTCGAATTTT</left_flank>
        <right_flank>TGAATTTTCACGAAATTCTGTTTCACCAACTTTTAAAATTTTTTGCATGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTCAAAAAACACAAGGGGTGATTTTTGTGATTTTTATGTGATTTTATGTGATTTTATGTGATTTTTATGTGATTTTTTTCGACCAAAAAATTTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACAGACAAACAATCCGAAATACGAAAAAAATGGAAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTCCGGGCCGGGCCCGGGCCTTGAAAATTTCCTCAGGCCCGGCCCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGCAAAAAACTAAATTTTGAAAATCTCAAAATTTCAATTTTTCAGCAAATGGATTGTTCTGGTGGCTCGTTTGAAACCGCGAATTCCGGAAGTTTTGATATGAATATGATGAGCGCTCATTCTTCATTTGATCAGGTTAGTTTTGAATTACTGTATCTGGAAAAGGCGGGTAATTGAATTTTTCGAATTTTCTGAATTTTCACGAAATTCTGTTTCACCAACTTTTAAAATTTTTTGCATGTTTTAGAATTTTTAGTTGACGTATTTGAATAACTTCTGATAAGACAAAATTGAACATTTCAAATTCTAGAAAAGGCGGGAATTTGAATTTTTTGAAATTTTCGAAATATTTTCCGTTCCACCGACTTTGGAACTTTTCAGGAATTTAAAAAGATTTTTGATGACTGTTTCCGTAATAGAAAATCAACATTTTTCCAGGGAACCGCTGGCATCAACATTGCCACACCAGAAATTTTGGCGACCATGCCGCCAAAATCAGTAATTCAAGACGATATTCGTGGCGGAAGTGGACGATTCTCGTTGGTTCGGAAACGAGGAAGATCTGAAGTTTGGAATCTGTTTGGGCAGGTTGGTCCGAGAAAATTTTTTTTTGAAAAAAATTTCTGCTTCAAATAGTTCTGAAATTTCTTGGAATTCCATGATTTTTAGTGCTCCGACGCTTTCCAAAAGAT</canonical>
            <polymorphic>AATTTTCAAAAAACACAAGGGGTGATTTTTGTGATTTTTATGTGATTTTATGTGATTTTATGTGATTTTTATGTGATTTTTTTCGACCAAAAAATTTTTTTTCGAGTTTTTCGATCTTTTTTGATCAGACAGACAAACAATCCGAAATACGAAAAAAATGGAAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTCCGGGCCGGGCCCGGGCCTTGAAAATTTCCTCAGGCCCGGCCCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGCAAAAAACTAAATTTTGAAAATCTCAAAATTTCAATTTTTCAGCAAATGGATTGTTCTGGTGGCTCGTTTGAAACCGCGAATTCCGGAAGTTTTGATATGAATATGATGAGCGCTCATTCTTCATTTGATCAGGTTAGTTTTGAATTACTGTATCTGGAAAAGGCGGGTAATTGAATTTTTCGAATTTTYTGAATTTTCACGAAATTCTGTTTCACCAACTTTTAAAATTTTTTGCATGTTTTAGAATTTTTAGTTGACGTATTTGAATAACTTCTGATAAGACAAAATTGAACATTTCAAATTCTAGAAAAGGCGGGAATTTGAATTTTTTGAAATTTTCGAAATATTTTCCGTTCCACCGACTTTGGAACTTTTCAGGAATTTAAAAAGATTTTTGATGACTGTTTCCGTAATAGAAAATCAACATTTTTCCAGGGAACCGCTGGCATCAACATTGCCACACCAGAAATTTTGGCGACCATGCCGCCAAAATCAGTAATTCAAGACGATATTCGTGGCGGAAGTGGACGATTCTCGTTGGTTCGGAAACGAGGAAGATCTGAAGTTTGGAATCTGTTTGGGCAGGTTGGTCCGAGAAAATTTTTTTTTGAAAAAAATTTCTGCTTCAAATAGTTCTGAAATTTCTTGGAATTCCATGATTTTTAGTGCTCCGACGCTTTCCAAAAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>358 270 127 85 44 35 32 17 16 16</canonical_bands>
                <polymorphic_bands>443 270 127 44 35 32 17 16 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCAGCAAATGGATTGT</pcr_primer_p1>
		<pcr_primer_p2>CAGAAGTTATTCAAATACGTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCAGCAAATGGATTGTTCTGGTGGCTCGTTTGAAACCGCGAATTCCGGAAGTTTTGATATGAATATGATGAGCGCTCATTCTTCATTTGATCAGGTTAGTTTTGAATTACTGTATCTGGAAAAGGCGGGTAATTGAATTTTTCGAATTTTCTGAATTTTCACGAAATTCTGTTTCACCAACTTTTAAAATTTTTTGCATGTTTTAGAATTTTTAGTTGACGTATTTGAATAACTTCTG</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCAGCAAATGGATTGTTCTGGTGGCTCGTTTGAAACCGCGAATTCCGGAAGTTTTGATATGAATATGATGAGCGCTCATTCTTCATTTGATCAGGTTAGTTTTGAATTACTGTATCTGGAAAAGGCGGGTAATTGAATTTTTCGAATTTTYTGAATTTTCACGAAATTCTGTTTCACCAACTTTTAAAATTTTTTGCATGTTTTAGAATTTTTAGTTGACGTATTTGAATAACTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34212</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>367501</contig_pos>
        <strand></strand>
        <context>TGAAATTTTC[G/A]AAATATTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AACATTTCAAATTCTAGAAAAGGCGGGAATTTGAATTTTTTGAAATTTTC</left_flank>
        <right_flank>AAATATTTTCCGTTCCACCGACTTTGGAACTTTTCAGGAATTTAAAAAGA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAATGGAAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTCCGGGCCGGGCCCGGGCCTTGAAAATTTCCTCAGGCCCGGCCCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGCAAAAAACTAAATTTTGAAAATCTCAAAATTTCAATTTTTCAGCAAATGGATTGTTCTGGTGGCTCGTTTGAAACCGCGAATTCCGGAAGTTTTGATATGAATATGATGAGCGCTCATTCTTCATTTGATCAGGTTAGTTTTGAATTACTGTATCTGGAAAAGGCGGGTAATTGAATTTTTCGAATTTTCTGAATTTTCACGAAATTCTGTTTCACCAACTTTTAAAATTTTTTGCATGTTTTAGAATTTTTAGTTGACGTATTTGAATAACTTCTGATAAGACAAAATTGAACATTTCAAATTCTAGAAAAGGCGGGAATTTGAATTTTTTGAAATTTTCGAAATATTTTCCGTTCCACCGACTTTGGAACTTTTCAGGAATTTAAAAAGATTTTTGATGACTGTTTCCGTAATAGAAAATCAACATTTTTCCAGGGAACCGCTGGCATCAACATTGCCACACCAGAAATTTTGGCGACCATGCCGCCAAAATCAGTAATTCAAGACGATATTCGTGGCGGAAGTGGACGATTCTCGTTGGTTCGGAAACGAGGAAGATCTGAAGTTTGGAATCTGTTTGGGCAGGTTGGTCCGAGAAAATTTTTTTTTGAAAAAAATTTCTGCTTCAAATAGTTCTGAAATTTCTTGGAATTCCATGATTTTTAGTGCTCCGACGCTTTCCAAAAGATATTTTTCATGATTTCTACTTTTTTCTAATTTTCGACTCTGGAAAACTTTTTTTTCCAGATTTTCCTGCTTCAAATAGTTCTGAAATTTCATGAAATTATATTGTTTAATAATGCGATTTCTATGGTTGGGAGTTTCTGTTTTACTCAAAAAA</canonical>
            <polymorphic>AAAAAATGGAAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGAATTTTTGACACCGGGCCTTCCGGGCCGGGCCCGGGCCTTGAAAATTTCCTCAGGCCCGGCCCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGCAAAAAACTAAATTTTGAAAATCTCAAAATTTCAATTTTTCAGCAAATGGATTGTTCTGGTGGCTCGTTTGAAACCGCGAATTCCGGAAGTTTTGATATGAATATGATGAGCGCTCATTCTTCATTTGATCAGGTTAGTTTTGAATTACTGTATCTGGAAAAGGCGGGTAATTGAATTTTTCGAATTTTCTGAATTTTCACGAAATTCTGTTTCACCAACTTTTAAAATTTTTTGCATGTTTTAGAATTTTTAGTTGACGTATTTGAATAACTTCTGATAAGACAAAATTGAACATTTCAAATTCTAGAAAAGGCGGGAATTTGAATTTTTTGAAATTTTCRAAATATTTTCCGTTCCACCGACTTTGGAACTTTTCAGGAATTTAAAAAGATTTTTGATGACTGTTTCCGTAATAGAAAATCAACATTTTTCCAGGGAACCGCTGGCATCAACATTGCCACACCAGAAATTTTGGCGACCATGCCGCCAAAATCAGTAATTCAAGACGATATTCGTGGCGGAAGTGGACGATTCTCGTTGGTTCGGAAACGAGGAAGATCTGAAGTTTGGAATCTGTTTGGGCAGGTTGGTCCGAGAAAATTTTTTTTTGAAAAAAATTTCTGCTTCAAATAGTTCTGAAATTTCTTGGAATTCCATGATTTTTAGTGCTCCGACGCTTTCCAAAAGATATTTTTCATGATTTCTACTTTTTTCTAATTTTCGACTCTGGAAAACTTTTTTTTCCAGATTTTCCTGCTTCAAATAGTTCTGAAATTTCATGAAATTATATTGTTTAATAATGCGATTTCTATGGTTGGGAGTTTCTGTTTTACTCAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 339 159</canonical_bands>
                <polymorphic_bands>661 339</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>382 340 159 119</canonical_bands>
                <polymorphic_bands>541 340 119</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCTGATAAGACAAAATTGAACA</pcr_primer_p1>
		<pcr_primer_p2>CACGAATATCGTCTTGAATTACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTTCTGATAAGACAAAATTGAACATTTCAAATTCTAGAAAAGGCGGGAATTTGAATTTTTTGAAATTTTCGAAATATTTTCCGTTCCACCGACTTTGGAACTTTTCAGGAATTTAAAAAGATTTTTGATGACTGTTTCCGTAATAGAAAATCAACATTTTTCCAGGGAACCGCTGGCATCAACATTGCCACACCAGAAATTTTGGCGACCATGCCGCCAAAATCAGTAATTCAAGACGATATTCGTG</canonical_amplicon>
		<polymorphic_amplicon>CTTCTGATAAGACAAAATTGAACATTTCAAATTCTAGAAAAGGCGGGAATTTGAATTTTTTGAAATTTTCRAAATATTTTCCGTTCCACCGACTTTGGAACTTTTCAGGAATTTAAAAAGATTTTTGATGACTGTTTCCGTAATAGAAAATCAACATTTTTCCAGGGAACCGCTGGCATCAACATTGCCACACCAGAAATTTTGGCGACCATGCCGCCAAAATCAGTAATTCAAGACGATATTCGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34213</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>367543</contig_pos>
        <strand></strand>
        <context>TTTCAGGAAT[T/C]TAAAAAGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAATTTTCGAAATATTTTCCGTTCCACCGACTTTGGAACTTTTCAGGAAT</left_flank>
        <right_flank>TAAAAAGATTTTTGATGACTGTTTCCGTAATAGAAAATCAACATTTTTCC</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATACAGAATTTTTGACACCGGGCCTTCCGGGCCGGGCCCGGGCCTTGAAAATTTCCTCAGGCCCGGCCCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGCAAAAAACTAAATTTTGAAAATCTCAAAATTTCAATTTTTCAGCAAATGGATTGTTCTGGTGGCTCGTTTGAAACCGCGAATTCCGGAAGTTTTGATATGAATATGATGAGCGCTCATTCTTCATTTGATCAGGTTAGTTTTGAATTACTGTATCTGGAAAAGGCGGGTAATTGAATTTTTCGAATTTTCTGAATTTTCACGAAATTCTGTTTCACCAACTTTTAAAATTTTTTGCATGTTTTAGAATTTTTAGTTGACGTATTTGAATAACTTCTGATAAGACAAAATTGAACATTTCAAATTCTAGAAAAGGCGGGAATTTGAATTTTTTGAAATTTTCGAAATATTTTCCGTTCCACCGACTTTGGAACTTTTCAGGAATTTAAAAAGATTTTTGATGACTGTTTCCGTAATAGAAAATCAACATTTTTCCAGGGAACCGCTGGCATCAACATTGCCACACCAGAAATTTTGGCGACCATGCCGCCAAAATCAGTAATTCAAGACGATATTCGTGGCGGAAGTGGACGATTCTCGTTGGTTCGGAAACGAGGAAGATCTGAAGTTTGGAATCTGTTTGGGCAGGTTGGTCCGAGAAAATTTTTTTTTGAAAAAAATTTCTGCTTCAAATAGTTCTGAAATTTCTTGGAATTCCATGATTTTTAGTGCTCCGACGCTTTCCAAAAGATATTTTTCATGATTTCTACTTTTTTCTAATTTTCGACTCTGGAAAACTTTTTTTTCCAGATTTTCCTGCTTCAAATAGTTCTGAAATTTCATGAAATTATATTGTTTAATAATGCGATTTCTATGGTTGGGAGTTTCTGTTTTACTCAAAAAATTAAATTCTCAATTTCAGAAAAAATTTTAATTAAATTTTTCC</canonical>
            <polymorphic>AAAAATACAGAATTTTTGACACCGGGCCTTCCGGGCCGGGCCCGGGCCTTGAAAATTTCCTCAGGCCCGGCCCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGCAAAAAACTAAATTTTGAAAATCTCAAAATTTCAATTTTTCAGCAAATGGATTGTTCTGGTGGCTCGTTTGAAACCGCGAATTCCGGAAGTTTTGATATGAATATGATGAGCGCTCATTCTTCATTTGATCAGGTTAGTTTTGAATTACTGTATCTGGAAAAGGCGGGTAATTGAATTTTTCGAATTTTCTGAATTTTCACGAAATTCTGTTTCACCAACTTTTAAAATTTTTTGCATGTTTTAGAATTTTTAGTTGACGTATTTGAATAACTTCTGATAAGACAAAATTGAACATTTCAAATTCTAGAAAAGGCGGGAATTTGAATTTTTTGAAATTTTCGAAATATTTTCCGTTCCACCGACTTTGGAACTTTTCAGGAATYTAAAAAGATTTTTGATGACTGTTTCCGTAATAGAAAATCAACATTTTTCCAGGGAACCGCTGGCATCAACATTGCCACACCAGAAATTTTGGCGACCATGCCGCCAAAATCAGTAATTCAAGACGATATTCGTGGCGGAAGTGGACGATTCTCGTTGGTTCGGAAACGAGGAAGATCTGAAGTTTGGAATCTGTTTGGGCAGGTTGGTCCGAGAAAATTTTTTTTTGAAAAAAATTTCTGCTTCAAATAGTTCTGAAATTTCTTGGAATTCCATGATTTTTAGTGCTCCGACGCTTTCCAAAAGATATTTTTCATGATTTCTACTTTTTTCTAATTTTCGACTCTGGAAAACTTTTTTTTCCAGATTTTCCTGCTTCAAATAGTTCTGAAATTTCATGAAATTATATTGTTTAATAATGCGATTTCTATGGTTGGGAGTTTCTGTTTTACTCAAAAAATTAAATTCTCAATTTCAGAAAAAATTTTAATTAAATTTTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>131 123 95 88 72 55 52 48 46 43 25 24 23 19 19 18 17 17 11 11 10 10 10 9 9 9 6</canonical_bands>
                <polymorphic_bands>134 131 123 95 72 55 52 48 43 25 24 23 19 19 18 17 17 11 11 10 10 10 9 9 9 6</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 340 161</canonical_bands>
                <polymorphic_bands>660 340</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>411 339 161 48 26 11 4</canonical_bands>
                <polymorphic_bands>572 339 48 26 11 4</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>101 88 66 64 57 57 48 46 46 43 41 30 26 25 24 23 19 18 17 17 14 12 11 10 10 10 10 9 9 9 7 6 6 6 5 5 5</canonical_bands>
                <polymorphic_bands>134 101 66 64 57 57 48 46 43 41 30 26 25 24 23 19 18 17 17 14 12 11 10 10 10 10 9 9 9 7 6 6 6 5 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCTGATAAGACAAAATTGAACA</pcr_primer_p1>
		<pcr_primer_p2>CACGAATATCGTCTTGAATTACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTTCTGATAAGACAAAATTGAACATTTCAAATTCTAGAAAAGGCGGGAATTTGAATTTTTTGAAATTTTCGAAATATTTTCCGTTCCACCGACTTTGGAACTTTTCAGGAATTTAAAAAGATTTTTGATGACTGTTTCCGTAATAGAAAATCAACATTTTTCCAGGGAACCGCTGGCATCAACATTGCCACACCAGAAATTTTGGCGACCATGCCGCCAAAATCAGTAATTCAAGACGATATTCGTG</canonical_amplicon>
		<polymorphic_amplicon>CTTCTGATAAGACAAAATTGAACATTTCAAATTCTAGAAAAGGCGGGAATTTGAATTTTTTGAAATTTTCGAAATATTTTCCGTTCCACCGACTTTGGAACTTTTCAGGAATYTAAAAAGATTTTTGATGACTGTTTCCGTAATAGAAAATCAACATTTTTCCAGGGAACCGCTGGCATCAACATTGCCACACCAGAAATTTTGGCGACCATGCCGCCAAAATCAGTAATTCAAGACGATATTCGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34214</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>412711</contig_pos>
        <strand>+</strand>
        <context>GCTAGTGAAT[A/G]AAACTGGAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAATAATTAAAGCCGAAGAAAACGTTTTATGACAAAAAAGCTAGTGAAT</left_flank>
        <right_flank>AAACTGGAACATTATCAAGAGAGCAAAAAAAATTACCAGAAAAAATGGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAAGTAACTGAAACAGGAAGAAAATTTTATTTTAATTCTCAATTTTAAAGAGATAACCCAGTTATTTGGATTGTTACGTTTCTCGGAAAACGTCCAAATCCTCAAATGATTTTTTGTTTAACGATTTTGTATTAAAATAAGTTTATTGTTTCAATATTATCATTTCGCATCAGTTTTACGTTTAAATTTTATTCTCTTGATGTTCCTAGAGTCAGTTAATGAATTGCAAGAATCAAACGCGATCCACAGCACTCTTATTGGGATTGTATTTTTTCTAGCAATAGATCTGGAGAGGCCAACGGACATGTAATTTCGAAAATTCAAAAATATCTGAAACTTCTGATAGAGAGATCCAAGATAATTGAAAAATCAAAATTTCTGAAATCACAAACTACATTTTTCCTTACTCATTTTGTACCGTTTTATGCATTTTTTTTTTTCGAAATTAGAATAATTAAAGCCGAAGAAAACGTTTTATGACAAAAAAGCTAGTGAATGAAACTGGAACATTATCAAGAGAGCAAAAAAAATTACCAGAAAAAATGGAAATCATGTATACGAAAATCTTGTAACGGCAAAAAAAGCAGCGATTTTTTAAAATGTTCACTTCTTCTAGGCCTTCTTAGCCGATCGAATTTCTTCTGGAGGCAAATACGGTGATCCGTCTCTGGAACTAGAATCTCCATCTGGAAGATATGTCGGCAAATTTATAGATGGAAGTTGTTGACGACGGTGCAGGTGGACGAATTTCTTTGTTGGATCTTCCTGAAATGGTTGGGAATTTTTGTGAACAACAACAACATAGAAAAATATCAGACTTTGTTGCTGCATCTCGATTATACAAAGTTATTGAAACTGTATTTTAATAATCCTTCTGAAATAAGGAAAATAGTGAGTTTACAATCAAAAACTTATTGTTTTGCTGTTTCATTAAAGCGAGAAATTTTCAAGTTTTACTGAAGAATGTCATTCTTATTTTATCAATACTCCGATTGATT</canonical>
            <polymorphic>ATGAAGTAACTGAAACAGGAAGAAAATTTTATTTTAATTCTCAATTTTAAAGAGATAACCCAGTTATTTGGATTGTTACGTTTCTCGGAAAACGTCCAAATCCTCAAATGATTTTTTGTTTAACGATTTTGTATTAAAATAAGTTTATTGTTTCAATATTATCATTTCGCATCAGTTTTACGTTTAAATTTTATTCTCTTGATGTTCCTAGAGTCAGTTAATGAATTGCAAGAATCAAACGCGATCCACAGCACTCTTATTGGGATTGTATTTTTTCTAGCAATAGATCTGGAGAGGCCAACGGACATGTAATTTCGAAAATTCAAAAATATCTGAAACTTCTGATAGAGAGATCCAAGATAATTGAAAAATCAAAATTTCTGAAATCACAAACTACATTTTTCCTTACTCATTTTGTACCGTTTTATGCATTTTTTTTTTTCGAAATTAGAATAATTAAAGCCGAAGAAAACGTTTTATGACAAAAAAGCTAGTGAATRAAACTGGAACATTATCAAGAGAGCAAAAAAAATTACCAGAAAAAATGGAAATCATGTATACGAAAATCTTGTAACGGCAAAAAAAGCAGCGATTTTTTAAAATGTTCACTTCTTCTAGGCCTTCTTAGCCGATCGAATTTCTTCTGGAGGCAAATACGGTGATCCGTCTCTGGAACTAGAATCTCCATCTGGAAGATATGTCGGCAAATTTATAGATGGAAGTTGTTGACGACGGTGCAGGTGGACGAATTTCTTTGTTGGATCTTCCTGAAATGGTTGGGAATTTTTGTGAACAACAACAACATAGAAAAATATCAGACTTTGTTGCTGCATCTCGATTATACAAAGTTATTGAAACTGTATTTTAATAATCCTTCTGAAATAAGGAAAATAGTGAGTTTACAATCAAAAACTTATTGTTTTGCTGTTTCATTAAAGCGAGAAATTTTCAAGTTTTACTGAAGAATGTCATTCTTATTTTATCAATACTCCGATTGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGAATAATTAAAGCCGAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCTTCCAGATGGAGATTCTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTAGAATAATTAAAGCCGAAGAAAACGTTTTATGACAAAAAAGCTAGTGAATGAAACTGGAACATTATCAAGAGAGCAAAAAAAATTACCAGAAAAAATGGAAATCATGTATACGAAAATCTTGTAACGGCAAAAAAAGCAGCGATTTTTTAAAATGTTCACTTCTTCTAGGCCTTCTTAGCCGATCGAATTTCTTCTGGAGGCAAATACGGTGATCCGTCTCTGGAACTAGAATCTCCATCTGGAAGA</canonical_amplicon>
		<polymorphic_amplicon>TTAGAATAATTAAAGCCGAAGAAAACGTTTTATGACAAAAAAGCTAGTGAATRAAACTGGAACATTATCAAGAGAGCAAAAAAAATTACCAGAAAAAATGGAAATCATGTATACGAAAATCTTGTAACGGCAAAAAAAGCAGCGATTTTTTAAAATGTTCACTTCTTCTAGGCCTTCTTAGCCGATCGAATTTCTTCTGGAGGCAAATACGGTGATCCGTCTCTGGAACTAGAATCTCCATCTGGAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34215</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>412843</contig_pos>
        <strand>+</strand>
        <context>TTCTTAGCCG[A/T]TCGAATTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAGCAGCGATTTTTTAAAATGTTCACTTCTTCTAGGCCTTCTTAGCCG</left_flank>
        <right_flank>TCGAATTTCTTCTGGAGGCAAATACGGTGATCCGTCTCTGGAACTAGAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTAAAATAAGTTTATTGTTTCAATATTATCATTTCGCATCAGTTTTACGTTTAAATTTTATTCTCTTGATGTTCCTAGAGTCAGTTAATGAATTGCAAGAATCAAACGCGATCCACAGCACTCTTATTGGGATTGTATTTTTTCTAGCAATAGATCTGGAGAGGCCAACGGACATGTAATTTCGAAAATTCAAAAATATCTGAAACTTCTGATAGAGAGATCCAAGATAATTGAAAAATCAAAATTTCTGAAATCACAAACTACATTTTTCCTTACTCATTTTGTACCGTTTTATGCATTTTTTTTTTTCGAAATTAGAATAATTAAAGCCGAAGAAAACGTTTTATGACAAAAAAGCTAGTGAATGAAACTGGAACATTATCAAGAGAGCAAAAAAAATTACCAGAAAAAATGGAAATCATGTATACGAAAATCTTGTAACGGCAAAAAAAGCAGCGATTTTTTAAAATGTTCACTTCTTCTAGGCCTTCTTAGCCGATCGAATTTCTTCTGGAGGCAAATACGGTGATCCGTCTCTGGAACTAGAATCTCCATCTGGAAGATATGTCGGCAAATTTATAGATGGAAGTTGTTGACGACGGTGCAGGTGGACGAATTTCTTTGTTGGATCTTCCTGAAATGGTTGGGAATTTTTGTGAACAACAACAACATAGAAAAATATCAGACTTTGTTGCTGCATCTCGATTATACAAAGTTATTGAAACTGTATTTTAATAATCCTTCTGAAATAAGGAAAATAGTGAGTTTACAATCAAAAACTTATTGTTTTGCTGTTTCATTAAAGCGAGAAATTTTCAAGTTTTACTGAAGAATGTCATTCTTATTTTATCAATACTCCGATTGATTAGCGCAATTTCATAATTATGATACTTCTGAAATCGAATTGTTTGAGGTTTTTGAGGTATCTTCTCGAAAGAACTATGTCTGATTGGTCCACGCCCATTTGGATTAGCTTTAAAAAATTTGCTTTAATGCTTT</canonical>
            <polymorphic>ATTAAAATAAGTTTATTGTTTCAATATTATCATTTCGCATCAGTTTTACGTTTAAATTTTATTCTCTTGATGTTCCTAGAGTCAGTTAATGAATTGCAAGAATCAAACGCGATCCACAGCACTCTTATTGGGATTGTATTTTTTCTAGCAATAGATCTGGAGAGGCCAACGGACATGTAATTTCGAAAATTCAAAAATATCTGAAACTTCTGATAGAGAGATCCAAGATAATTGAAAAATCAAAATTTCTGAAATCACAAACTACATTTTTCCTTACTCATTTTGTACCGTTTTATGCATTTTTTTTTTTCGAAATTAGAATAATTAAAGCCGAAGAAAACGTTTTATGACAAAAAAGCTAGTGAATGAAACTGGAACATTATCAAGAGAGCAAAAAAAATTACCAGAAAAAATGGAAATCATGTATACGAAAATCTTGTAACGGCAAAAAAAGCAGCGATTTTTTAAAATGTTCACTTCTTCTAGGCCTTCTTAGCCGWTCGAATTTCTTCTGGAGGCAAATACGGTGATCCGTCTCTGGAACTAGAATCTCCATCTGGAAGATATGTCGGCAAATTTATAGATGGAAGTTGTTGACGACGGTGCAGGTGGACGAATTTCTTTGTTGGATCTTCCTGAAATGGTTGGGAATTTTTGTGAACAACAACAACATAGAAAAATATCAGACTTTGTTGCTGCATCTCGATTATACAAAGTTATTGAAACTGTATTTTAATAATCCTTCTGAAATAAGGAAAATAGTGAGTTTACAATCAAAAACTTATTGTTTTGCTGTTTCATTAAAGCGAGAAATTTTCAAGTTTTACTGAAGAATGTCATTCTTATTTTATCAATACTCCGATTGATTAGCGCAATTTCATAATTATGATACTTCTGAAATCGAATTGTTTGAGGTTTTTGAGGTATCTTCTCGAAAGAACTATGTCTGATTGGTCCACGCCCATTTGGATTAGCTTTAAAAAATTTGCTTTAATGCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>372 279 110 100 66 43 30</canonical_bands>
                <polymorphic_bands>372 309 110 100 66 43</polymorphic_bands>
            </assay>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CGATCG</site>
                <isoschizomers>
                    <enzyme>BspCI</enzyme>
                    <enzyme>Ple19I</enzyme>
                    <enzyme>PvuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGAATAATTAAAGCCGAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCTTCCAGATGGAGATTCTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTAGAATAATTAAAGCCGAAGAAAACGTTTTATGACAAAAAAGCTAGTGAATGAAACTGGAACATTATCAAGAGAGCAAAAAAAATTACCAGAAAAAATGGAAATCATGTATACGAAAATCTTGTAACGGCAAAAAAAGCAGCGATTTTTTAAAATGTTCACTTCTTCTAGGCCTTCTTAGCCGATCGAATTTCTTCTGGAGGCAAATACGGTGATCCGTCTCTGGAACTAGAATCTCCATCTGGAAGA</canonical_amplicon>
		<polymorphic_amplicon>TTAGAATAATTAAAGCCGAAGAAAACGTTTTATGACAAAAAAGCTAGTGAATGAAACTGGAACATTATCAAGAGAGCAAAAAAAATTACCAGAAAAAATGGAAATCATGTATACGAAAATCTTGTAACGGCAAAAAAAGCAGCGATTTTTTAAAATGTTCACTTCTTCTAGGCCTTCTTAGCCGWTCGAATTTCTTCTGGAGGCAAATACGGTGATCCGTCTCTGGAACTAGAATCTCCATCTGGAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34216</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>412873</contig_pos>
        <strand>+</strand>
        <context>AAATACGGTG[A/T]TCCGTCTCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTCTAGGCCTTCTTAGCCGATCGAATTTCTTCTGGAGGCAAATACGGTG</left_flank>
        <right_flank>TCCGTCTCTGGAACTAGAATCTCCATCTGGAAGATATGTCGGCAAATTTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTCGCATCAGTTTTACGTTTAAATTTTATTCTCTTGATGTTCCTAGAGTCAGTTAATGAATTGCAAGAATCAAACGCGATCCACAGCACTCTTATTGGGATTGTATTTTTTCTAGCAATAGATCTGGAGAGGCCAACGGACATGTAATTTCGAAAATTCAAAAATATCTGAAACTTCTGATAGAGAGATCCAAGATAATTGAAAAATCAAAATTTCTGAAATCACAAACTACATTTTTCCTTACTCATTTTGTACCGTTTTATGCATTTTTTTTTTTCGAAATTAGAATAATTAAAGCCGAAGAAAACGTTTTATGACAAAAAAGCTAGTGAATGAAACTGGAACATTATCAAGAGAGCAAAAAAAATTACCAGAAAAAATGGAAATCATGTATACGAAAATCTTGTAACGGCAAAAAAAGCAGCGATTTTTTAAAATGTTCACTTCTTCTAGGCCTTCTTAGCCGATCGAATTTCTTCTGGAGGCAAATACGGTGATCCGTCTCTGGAACTAGAATCTCCATCTGGAAGATATGTCGGCAAATTTATAGATGGAAGTTGTTGACGACGGTGCAGGTGGACGAATTTCTTTGTTGGATCTTCCTGAAATGGTTGGGAATTTTTGTGAACAACAACAACATAGAAAAATATCAGACTTTGTTGCTGCATCTCGATTATACAAAGTTATTGAAACTGTATTTTAATAATCCTTCTGAAATAAGGAAAATAGTGAGTTTACAATCAAAAACTTATTGTTTTGCTGTTTCATTAAAGCGAGAAATTTTCAAGTTTTACTGAAGAATGTCATTCTTATTTTATCAATACTCCGATTGATTAGCGCAATTTCATAATTATGATACTTCTGAAATCGAATTGTTTGAGGTTTTTGAGGTATCTTCTCGAAAGAACTATGTCTGATTGGTCCACGCCCATTTGGATTAGCTTTAAAAAATTTGCTTTAATGCTTTAAAAAAAGGGGGGGGTCTAAATTGCTGAAG</canonical>
            <polymorphic>CATTTCGCATCAGTTTTACGTTTAAATTTTATTCTCTTGATGTTCCTAGAGTCAGTTAATGAATTGCAAGAATCAAACGCGATCCACAGCACTCTTATTGGGATTGTATTTTTTCTAGCAATAGATCTGGAGAGGCCAACGGACATGTAATTTCGAAAATTCAAAAATATCTGAAACTTCTGATAGAGAGATCCAAGATAATTGAAAAATCAAAATTTCTGAAATCACAAACTACATTTTTCCTTACTCATTTTGTACCGTTTTATGCATTTTTTTTTTTCGAAATTAGAATAATTAAAGCCGAAGAAAACGTTTTATGACAAAAAAGCTAGTGAATGAAACTGGAACATTATCAAGAGAGCAAAAAAAATTACCAGAAAAAATGGAAATCATGTATACGAAAATCTTGTAACGGCAAAAAAAGCAGCGATTTTTTAAAATGTTCACTTCTTCTAGGCCTTCTTAGCCGATCGAATTTCTTCTGGAGGCAAATACGGTGWTCCGTCTCTGGAACTAGAATCTCCATCTGGAAGATATGTCGGCAAATTTATAGATGGAAGTTGTTGACGACGGTGCAGGTGGACGAATTTCTTTGTTGGATCTTCCTGAAATGGTTGGGAATTTTTGTGAACAACAACAACATAGAAAAATATCAGACTTTGTTGCTGCATCTCGATTATACAAAGTTATTGAAACTGTATTTTAATAATCCTTCTGAAATAAGGAAAATAGTGAGTTTACAATCAAAAACTTATTGTTTTGCTGTTTCATTAAAGCGAGAAATTTTCAAGTTTTACTGAAGAATGTCATTCTTATTTTATCAATACTCCGATTGATTAGCGCAATTTCATAATTATGATACTTCTGAAATCGAATTGTTTGAGGTTTTTGAGGTATCTTCTCGAAAGAACTATGTCTGATTGGTCCACGCCCATTTGGATTAGCTTTAAAAAATTTGCTTTAATGCTTTAAAAAAAGGGGGGGGTCTAAATTGCTGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>402 279 100 80 66 43 30</canonical_bands>
                <polymorphic_bands>402 279 130 80 66 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCACTTCTTCTAGGCCTTCTTA</pcr_primer_p1>
		<pcr_primer_p2>TCAATAACTTTGTATAATCGAGATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCACTTCTTCTAGGCCTTCTTAGCCGATCGAATTTCTTCTGGAGGCAAATACGGTGATCCGTCTCTGGAACTAGAATCTCCATCTGGAAGATATGTCGGCAAATTTATAGATGGAAGTTGTTGACGACGGTGCAGGTGGACGAATTTCTTTGTTGGATCTTCCTGAAATGGTTGGGAATTTTTGTGAACAACAACAACATAGAAAAATATCAGACTTTGTTGCTGCATCTCGATTATACAAAGTTATTGA</canonical_amplicon>
		<polymorphic_amplicon>TCACTTCTTCTAGGCCTTCTTAGCCGATCGAATTTCTTCTGGAGGCAAATACGGTGWTCCGTCTCTGGAACTAGAATCTCCATCTGGAAGATATGTCGGCAAATTTATAGATGGAAGTTGTTGACGACGGTGCAGGTGGACGAATTTCTTTGTTGGATCTTCCTGAAATGGTTGGGAATTTTTGTGAACAACAACAACATAGAAAAATATCAGACTTTGTTGCTGCATCTCGATTATACAAAGTTATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34217</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>412908</contig_pos>
        <strand>+</strand>
        <context>ATCTGGAAGA[A/T]ATGTCGGCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGGCAAATACGGTGATCCGTCTCTGGAACTAGAATCTCCATCTGGAAGA</left_flank>
        <right_flank>ATGTCGGCAAATTTATAGATGGAAGTTGTTGACGACGGTGCAGGTGGACG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGATGTTCCTAGAGTCAGTTAATGAATTGCAAGAATCAAACGCGATCCACAGCACTCTTATTGGGATTGTATTTTTTCTAGCAATAGATCTGGAGAGGCCAACGGACATGTAATTTCGAAAATTCAAAAATATCTGAAACTTCTGATAGAGAGATCCAAGATAATTGAAAAATCAAAATTTCTGAAATCACAAACTACATTTTTCCTTACTCATTTTGTACCGTTTTATGCATTTTTTTTTTTCGAAATTAGAATAATTAAAGCCGAAGAAAACGTTTTATGACAAAAAAGCTAGTGAATGAAACTGGAACATTATCAAGAGAGCAAAAAAAATTACCAGAAAAAATGGAAATCATGTATACGAAAATCTTGTAACGGCAAAAAAAGCAGCGATTTTTTAAAATGTTCACTTCTTCTAGGCCTTCTTAGCCGATCGAATTTCTTCTGGAGGCAAATACGGTGATCCGTCTCTGGAACTAGAATCTCCATCTGGAAGATATGTCGGCAAATTTATAGATGGAAGTTGTTGACGACGGTGCAGGTGGACGAATTTCTTTGTTGGATCTTCCTGAAATGGTTGGGAATTTTTGTGAACAACAACAACATAGAAAAATATCAGACTTTGTTGCTGCATCTCGATTATACAAAGTTATTGAAACTGTATTTTAATAATCCTTCTGAAATAAGGAAAATAGTGAGTTTACAATCAAAAACTTATTGTTTTGCTGTTTCATTAAAGCGAGAAATTTTCAAGTTTTACTGAAGAATGTCATTCTTATTTTATCAATACTCCGATTGATTAGCGCAATTTCATAATTATGATACTTCTGAAATCGAATTGTTTGAGGTTTTTGAGGTATCTTCTCGAAAGAACTATGTCTGATTGGTCCACGCCCATTTGGATTAGCTTTAAAAAATTTGCTTTAATGCTTTAAAAAAAGGGGGGGGTCTAAATTGCTGAAGAGGTGAGTATAGCATGTTACAAACTCCGATAGCAA</canonical>
            <polymorphic>CTTGATGTTCCTAGAGTCAGTTAATGAATTGCAAGAATCAAACGCGATCCACAGCACTCTTATTGGGATTGTATTTTTTCTAGCAATAGATCTGGAGAGGCCAACGGACATGTAATTTCGAAAATTCAAAAATATCTGAAACTTCTGATAGAGAGATCCAAGATAATTGAAAAATCAAAATTTCTGAAATCACAAACTACATTTTTCCTTACTCATTTTGTACCGTTTTATGCATTTTTTTTTTTCGAAATTAGAATAATTAAAGCCGAAGAAAACGTTTTATGACAAAAAAGCTAGTGAATGAAACTGGAACATTATCAAGAGAGCAAAAAAAATTACCAGAAAAAATGGAAATCATGTATACGAAAATCTTGTAACGGCAAAAAAAGCAGCGATTTTTTAAAATGTTCACTTCTTCTAGGCCTTCTTAGCCGATCGAATTTCTTCTGGAGGCAAATACGGTGATCCGTCTCTGGAACTAGAATCTCCATCTGGAAGAWATGTCGGCAAATTTATAGATGGAAGTTGTTGACGACGGTGCAGGTGGACGAATTTCTTTGTTGGATCTTCCTGAAATGGTTGGGAATTTTTGTGAACAACAACAACATAGAAAAATATCAGACTTTGTTGCTGCATCTCGATTATACAAAGTTATTGAAACTGTATTTTAATAATCCTTCTGAAATAAGGAAAATAGTGAGTTTACAATCAAAAACTTATTGTTTTGCTGTTTCATTAAAGCGAGAAATTTTCAAGTTTTACTGAAGAATGTCATTCTTATTTTATCAATACTCCGATTGATTAGCGCAATTTCATAATTATGATACTTCTGAAATCGAATTGTTTGAGGTTTTTGAGGTATCTTCTCGAAAGAACTATGTCTGATTGGTCCACGCCCATTTGGATTAGCTTTAAAAAATTTGCTTTAATGCTTTAAAAAAAGGGGGGGGTCTAAATTGCTGAAGAGGTGAGTATAGCATGTTACAAACTCCGATAGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCACTTCTTCTAGGCCTTCTTA</pcr_primer_p1>
		<pcr_primer_p2>TCAATAACTTTGTATAATCGAGATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCACTTCTTCTAGGCCTTCTTAGCCGATCGAATTTCTTCTGGAGGCAAATACGGTGATCCGTCTCTGGAACTAGAATCTCCATCTGGAAGATATGTCGGCAAATTTATAGATGGAAGTTGTTGACGACGGTGCAGGTGGACGAATTTCTTTGTTGGATCTTCCTGAAATGGTTGGGAATTTTTGTGAACAACAACAACATAGAAAAATATCAGACTTTGTTGCTGCATCTCGATTATACAAAGTTATTGA</canonical_amplicon>
		<polymorphic_amplicon>TCACTTCTTCTAGGCCTTCTTAGCCGATCGAATTTCTTCTGGAGGCAAATACGGTGATCCGTCTCTGGAACTAGAATCTCCATCTGGAAGAWATGTCGGCAAATTTATAGATGGAAGTTGTTGACGACGGTGCAGGTGGACGAATTTCTTTGTTGGATCTTCCTGAAATGGTTGGGAATTTTTGTGAACAACAACAACATAGAAAAATATCAGACTTTGTTGCTGCATCTCGATTATACAAAGTTATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34218</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>413082</contig_pos>
        <strand>+</strand>
        <context>TATTTTAATA[A/G]TCCTTYTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGTTGCTGCATCTCGATTATACAAAGTTATTGAAACTGTATTTTAATA</left_flank>
        <right_flank>TCCTTCTGAAATAAGGAAAATAGTGAGTTTACAATCAAAAACTTATTGTT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAATTTCTGAAATCACAAACTACATTTTTCCTTACTCATTTTGTACCGTTTTATGCATTTTTTTTTTTCGAAATTAGAATAATTAAAGCCGAAGAAAACGTTTTATGACAAAAAAGCTAGTGAATGAAACTGGAACATTATCAAGAGAGCAAAAAAAATTACCAGAAAAAATGGAAATCATGTATACGAAAATCTTGTAACGGCAAAAAAAGCAGCGATTTTTTAAAATGTTCACTTCTTCTAGGCCTTCTTAGCCGATCGAATTTCTTCTGGAGGCAAATACGGTGATCCGTCTCTGGAACTAGAATCTCCATCTGGAAGATATGTCGGCAAATTTATAGATGGAAGTTGTTGACGACGGTGCAGGTGGACGAATTTCTTTGTTGGATCTTCCTGAAATGGTTGGGAATTTTTGTGAACAACAACAACATAGAAAAATATCAGACTTTGTTGCTGCATCTCGATTATACAAAGTTATTGAAACTGTATTTTAATAATCCTTCTGAAATAAGGAAAATAGTGAGTTTACAATCAAAAACTTATTGTTTTGCTGTTTCATTAAAGCGAGAAATTTTCAAGTTTTACTGAAGAATGTCATTCTTATTTTATCAATACTCCGATTGATTAGCGCAATTTCATAATTATGATACTTCTGAAATCGAATTGTTTGAGGTTTTTGAGGTATCTTCTCGAAAGAACTATGTCTGATTGGTCCACGCCCATTTGGATTAGCTTTAAAAAATTTGCTTTAATGCTTTAAAAAAAGGGGGGGGTCTAAATTGCTGAAGAGGTGAGTATAGCATGTTACAAACTCCGATAGCAAAAAATTAGAATTGAAACTTCATGTTGATCGTAATTTAAAAAAACACTGTTTAATGGTTGTATGAATTCTATGAAATCCTGAACATTGTTCGATCGAAGAGCCTTTGTTCCTTCAAGTTGTACAACATGCAGTTCTCAAAAATCTCCAAAATAATGCGACAGGAAAGTAATGCAA</canonical>
            <polymorphic>TCAAAATTTCTGAAATCACAAACTACATTTTTCCTTACTCATTTTGTACCGTTTTATGCATTTTTTTTTTTCGAAATTAGAATAATTAAAGCCGAAGAAAACGTTTTATGACAAAAAAGCTAGTGAATGAAACTGGAACATTATCAAGAGAGCAAAAAAAATTACCAGAAAAAATGGAAATCATGTATACGAAAATCTTGTAACGGCAAAAAAAGCAGCGATTTTTTAAAATGTTCACTTCTTCTAGGCCTTCTTAGCCGATCGAATTTCTTCTGGAGGCAAATACGGTGATCCGTCTCTGGAACTAGAATCTCCATCTGGAAGATATGTCGGCAAATTTATAGATGGAAGTTGTTGACGACGGTGCAGGTGGACGAATTTCTTTGTTGGATCTTCCTGAAATGGTTGGGAATTTTTGTGAACAACAACAACATAGAAAAATATCAGACTTTGTTGCTGCATCTCGATTATACAAAGTTATTGAAACTGTATTTTAATARTCCTTCTGAAATAAGGAAAATAGTGAGTTTACAATCAAAAACTTATTGTTTTGCTGTTTCATTAAAGCGAGAAATTTTCAAGTTTTACTGAAGAATGTCATTCTTATTTTATCAATACTCCGATTGATTAGCGCAATTTCATAATTATGATACTTCTGAAATCGAATTGTTTGAGGTTTTTGAGGTATCTTCTCGAAAGAACTATGTCTGATTGGTCCACGCCCATTTGGATTAGCTTTAAAAAATTTGCTTTAATGCTTTAAAAAAAGGGGGGGGTCTAAATTGCTGAAGAGGTGAGTATAGCATGTTACAAACTCCGATAGCAAAAAATTAGAATTGAAACTTCATGTTGATCGTAATTTAAAAAAACACTGTTTAATGGTTGTATGAATTCTATGAAATCCTGAACATTGTTCGATCGAAGAGCCTTTGTTCCTTCAAGTTGTACAACATGCAGTTCTCAAAAATCTCCAAAATAATGCGACAGGAAAGTAATGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAACAACAACAACATAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAATTCGATTTCAGAAGTATCAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGAACAACAACAACATAGAAAAATATCAGACTTTGTTGCTGCATCTCGATTATACAAAGTTATTGAAACTGTATTTTAATAATCCTTCTGAAATAAGGAAAATAGTGAGTTTACAATCAAAAACTTATTGTTTTGCTGTTTCATTAAAGCGAGAAATTTTCAAGTTTTACTGAAGAATGTCATTCTTATTTTATCAATACTCCGATTGATTAGCGCAATTTCATAATTATGATACTTCTGAAATCGAATTG</canonical_amplicon>
		<polymorphic_amplicon>TGAACAACAACAACATAGAAAAATATCAGACTTTGTTGCTGCATCTCGATTATACAAAGTTATTGAAACTGTATTTTAATARTCCTTCTGAAATAAGGAAAATAGTGAGTTTACAATCAAAAACTTATTGTTTTGCTGTTTCATTAAAGCGAGAAATTTTCAAGTTTTACTGAAGAATGTCATTCTTATTTTATCAATACTCCGATTGATTAGCGCAATTTCATAATTATGATACTTCTGAAATCGAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34219</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>413088</contig_pos>
        <strand>+</strand>
        <context>AATARTCCTT[C/T]TGAAATAAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTGCATCTCGATTATACAAAGTTATTGAAACTGTATTTTAATAATCCTT</left_flank>
        <right_flank>TGAAATAAGGAAAATAGTGAGTTTACAATCAAAAACTTATTGTTTTGCTG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTGAAATCACAAACTACATTTTTCCTTACTCATTTTGTACCGTTTTATGCATTTTTTTTTTTCGAAATTAGAATAATTAAAGCCGAAGAAAACGTTTTATGACAAAAAAGCTAGTGAATGAAACTGGAACATTATCAAGAGAGCAAAAAAAATTACCAGAAAAAATGGAAATCATGTATACGAAAATCTTGTAACGGCAAAAAAAGCAGCGATTTTTTAAAATGTTCACTTCTTCTAGGCCTTCTTAGCCGATCGAATTTCTTCTGGAGGCAAATACGGTGATCCGTCTCTGGAACTAGAATCTCCATCTGGAAGATATGTCGGCAAATTTATAGATGGAAGTTGTTGACGACGGTGCAGGTGGACGAATTTCTTTGTTGGATCTTCCTGAAATGGTTGGGAATTTTTGTGAACAACAACAACATAGAAAAATATCAGACTTTGTTGCTGCATCTCGATTATACAAAGTTATTGAAACTGTATTTTAATAATCCTTCTGAAATAAGGAAAATAGTGAGTTTACAATCAAAAACTTATTGTTTTGCTGTTTCATTAAAGCGAGAAATTTTCAAGTTTTACTGAAGAATGTCATTCTTATTTTATCAATACTCCGATTGATTAGCGCAATTTCATAATTATGATACTTCTGAAATCGAATTGTTTGAGGTTTTTGAGGTATCTTCTCGAAAGAACTATGTCTGATTGGTCCACGCCCATTTGGATTAGCTTTAAAAAATTTGCTTTAATGCTTTAAAAAAAGGGGGGGGTCTAAATTGCTGAAGAGGTGAGTATAGCATGTTACAAACTCCGATAGCAAAAAATTAGAATTGAAACTTCATGTTGATCGTAATTTAAAAAAACACTGTTTAATGGTTGTATGAATTCTATGAAATCCTGAACATTGTTCGATCGAAGAGCCTTTGTTCCTTCAAGTTGTACAACATGCAGTTCTCAAAAATCTCCAAAATAATGCGACAGGAAAGTAATGCAACAGAAT</canonical>
            <polymorphic>TTTCTGAAATCACAAACTACATTTTTCCTTACTCATTTTGTACCGTTTTATGCATTTTTTTTTTTCGAAATTAGAATAATTAAAGCCGAAGAAAACGTTTTATGACAAAAAAGCTAGTGAATGAAACTGGAACATTATCAAGAGAGCAAAAAAAATTACCAGAAAAAATGGAAATCATGTATACGAAAATCTTGTAACGGCAAAAAAAGCAGCGATTTTTTAAAATGTTCACTTCTTCTAGGCCTTCTTAGCCGATCGAATTTCTTCTGGAGGCAAATACGGTGATCCGTCTCTGGAACTAGAATCTCCATCTGGAAGATATGTCGGCAAATTTATAGATGGAAGTTGTTGACGACGGTGCAGGTGGACGAATTTCTTTGTTGGATCTTCCTGAAATGGTTGGGAATTTTTGTGAACAACAACAACATAGAAAAATATCAGACTTTGTTGCTGCATCTCGATTATACAAAGTTATTGAAACTGTATTTTAATAATCCTTYTGAAATAAGGAAAATAGTGAGTTTACAATCAAAAACTTATTGTTTTGCTGTTTCATTAAAGCGAGAAATTTTCAAGTTTTACTGAAGAATGTCATTCTTATTTTATCAATACTCCGATTGATTAGCGCAATTTCATAATTATGATACTTCTGAAATCGAATTGTTTGAGGTTTTTGAGGTATCTTCTCGAAAGAACTATGTCTGATTGGTCCACGCCCATTTGGATTAGCTTTAAAAAATTTGCTTTAATGCTTTAAAAAAAGGGGGGGGTCTAAATTGCTGAAGAGGTGAGTATAGCATGTTACAAACTCCGATAGCAAAAAATTAGAATTGAAACTTCATGTTGATCGTAATTTAAAAAAACACTGTTTAATGGTTGTATGAATTCTATGAAATCCTGAACATTGTTCGATCGAAGAGCCTTTGTTCCTTCAAGTTGTACAACATGCAGTTCTCAAAAATCTCCAAAATAATGCGACAGGAAAGTAATGCAACAGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>435 188 114 109 61 52 36 5</canonical_bands>
                <polymorphic_bands>435 188 175 109 52 36 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAACAACAACAACATAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAATTCGATTTCAGAAGTATCAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGAACAACAACAACATAGAAAAATATCAGACTTTGTTGCTGCATCTCGATTATACAAAGTTATTGAAACTGTATTTTAATAATCCTTCTGAAATAAGGAAAATAGTGAGTTTACAATCAAAAACTTATTGTTTTGCTGTTTCATTAAAGCGAGAAATTTTCAAGTTTTACTGAAGAATGTCATTCTTATTTTATCAATACTCCGATTGATTAGCGCAATTTCATAATTATGATACTTCTGAAATCGAATTG</canonical_amplicon>
		<polymorphic_amplicon>TGAACAACAACAACATAGAAAAATATCAGACTTTGTTGCTGCATCTCGATTATACAAAGTTATTGAAACTGTATTTTAATAATCCTTYTGAAATAAGGAAAATAGTGAGTTTACAATCAAAAACTTATTGTTTTGCTGTTTCATTAAAGCGAGAAATTTTCAAGTTTTACTGAAGAATGTCATTCTTATTTTATCAATACTCCGATTGATTAGCGCAATTTCATAATTATGATACTTCTGAAATCGAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34220</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>426539</contig_pos>
        <strand></strand>
        <context>aataaggggg[G/A]acccttatgt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGGCCTCTCATTCGACAAGTTTTGAAAATTTCAAAAAACAAATAAGGGGG</left_flank>
        <right_flank>ACCCTTATGTGATTTTTTTCGATCAAAAAATTTTTTTCGAGTTTTTTTAA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATTTGAAACAGTAAATTGTTTTTCTCACCGTCCTTTTTGACCATCAAGTCCATCGTGTGCCGTTCGGTCCTCGGATCTTCTGGAACTTGCTCGGCGGATGGTGGTCTTACTGTAGCTGTAATTATTCGAATGTCATCATCGTCAATTTGGTCTTCAGAATCTGATAGCTTTATGACGTCATCAGATGGACCCGGTTGGCTGTTCATGTTTCCTTTTTGAAAATCTGGCAAAACAAATGATTCGACATTAAATTTATAAAAATTAAAGAGAGACAAGAGAGGAAGTTGAAACATTTAAAAATGGGAAAATTGAAATTTCAGACAATTTTTTAAAATTCAATACAAATAGAATAGGCAAAATTTCTGAATAAAACTTATACTAATAACCATACTGGTAACGGGCCGGGCCGGGCTTTTTACCGAATTTAGAGGCCCGGCCCGGCTCGGCAGGCCTCTCATTCGACAAGTTTTGAAAATTTCAAAAAACAAATAAGGGGGGACCCTTATGTGATTTTTTTCGATCAAAAAATTTTTTTCGAGTTTTTTTAAAAAATATTTTTTGATCAAACAGACAAACAGTCCAAAAAGCACAAAAAAATATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTACGCTAATAACGTAACTATCAATTTTCAGAGATTTTTCAGAATTTAAAAACATTTAGAAACAGAAAGTTTTCGAAACATTTTGAAGTTTTAATTTGAGAAAACTTTGAATTTTGAGATAAAATTTGCTCTAGTGATCTGAAGTTTTGATTTTTAGAATTAAAGTTTGAACTAATTCCGAAATTTCAAGTTTTTGGATTGCGAAATTCTAAAAAAATGAATTTGAATTTTTTCTGATTTCAGCTGTTCGAGATTTGCCGAACATTCCTATTTTTTAGAGTGTAAATTTCAAAGAAAATGCCCT</canonical>
            <polymorphic>TAATTTGAAACAGTAAATTGTTTTTCTCACCGTCCTTTTTGACCATCAAGTCCATCGTGTGCCGTTCGGTCCTCGGATCTTCTGGAACTTGCTCGGCGGATGGTGGTCTTACTGTAGCTGTAATTATTCGAATGTCATCATCGTCAATTTGGTCTTCAGAATCTGATAGCTTTATGACGTCATCAGATGGACCCGGTTGGCTGTTCATGTTTCCTTTTTGAAAATCTGGCAAAACAAATGATTCGACATTAAATTTATAAAAATTAAAGAGAGACAAGAGAGGAAGTTGAAACATTTAAAAATGGGAAAATTGAAATTTCAGACAATTTTTTAAAATTCAATACAAATAGAATAGGCAAAATTTCTGAATAAAACTTATACTAATAACCATACTGGTAACGGGCCGGGCCGGGCTTTTTACCGAATTTAGAGGCCCGGCCCGGCTCGGCAGGCCTCTCATTCGACAAGTTTTGAAAATTTCAAAAAACAAATAAGGGGGRACCCTTATGTGATTTTTTTCGATCAAAAAATTTTTTTCGAGTTTTTTTAAAAAATATTTTTTGATCAAACAGACAAACAGTCCAAAAAGCACAAAAAAATATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTACGCTAATAACGTAACTATCAATTTTCAGAGATTTTTCAGAATTTAAAAACATTTAGAAACAGAAAGTTTTCGAAACATTTTGAAGTTTTAATTTGAGAAAACTTTGAATTTTGAGATAAAATTTGCTCTAGTGATCTGAAGTTTTGATTTTTAGAATTAAAGTTTGAACTAATTCCGAAATTTCAAGTTTTTGGATTGCGAAATTCTAAAAAAATGAATTTGAATTTTTTCTGATTTCAGCTGTTCGAGATTTGCCGAACATTCCTATTTTTTAGAGTGTAAATTTCAAAGAAAATGCCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>501 310 121 68</canonical_bands>
                <polymorphic_bands>811 121 68</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>317 212 160 121 71 62 26 16 5 5 5</canonical_bands>
                <polymorphic_bands>317 222 212 121 71 26 16 5 5 5</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGGWCCC</site>
                <isoschizomers>
                    <enzyme>SanDI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGCAAAATTTCTGAATAAAACT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTTGGACTGTTTGTCTGTT</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>AGGCAAAATTTCTGAATAAAACTTATACTAATAACCATACTGGTAACGGGCCGGGCCGGGCTTTTTACCGAATTTAGAGGCCCGGCCCGGCTCGGCAGGCCTCTCATTCGACAAGTTTTGAAAATTTCAAAAAACAAATAAGGGGGGACCCTTATGTGATTTTTTTCGATCAAAAAATTTTTTTCGAGTTTTTTTAAAAAATATTTTTTGATCAAACAGACAAACAGTCCAAAAAG</canonical_amplicon>
		<polymorphic_amplicon>AGGCAAAATTTCTGAATAAAACTTATACTAATAACCATACTGGTAACGGGCCGGGCCGGGCTTTTTACCGAATTTAGAGGCCCGGCCCGGCTCGGCAGGCCTCTCATTCGACAAGTTTTGAAAATTTCAAAAAACAAATAAGGGGGRACCCTTATGTGATTTTTTTCGATCAAAAAATTTTTTTCGAGTTTTTTTAAAAAATATTTTTTGATCAAACAGACAAACAGTCCAAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34221</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>426570</contig_pos>
        <strand></strand>
        <context>gatcaaaaaa[T/A]ttttttcgag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CAAAAAACAAATAAGGGGGGACCCTTATGTGATTTTTTTCGATCAAAAAA</left_flank>
        <right_flank>TTTTTTCGAGTTTTTTTAAAAAATATTTTTTGATCAAACAGACAAACAGT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCCTTTTTGACCATCAAGTCCATCGTGTGCCGTTCGGTCCTCGGATCTTCTGGAACTTGCTCGGCGGATGGTGGTCTTACTGTAGCTGTAATTATTCGAATGTCATCATCGTCAATTTGGTCTTCAGAATCTGATAGCTTTATGACGTCATCAGATGGACCCGGTTGGCTGTTCATGTTTCCTTTTTGAAAATCTGGCAAAACAAATGATTCGACATTAAATTTATAAAAATTAAAGAGAGACAAGAGAGGAAGTTGAAACATTTAAAAATGGGAAAATTGAAATTTCAGACAATTTTTTAAAATTCAATACAAATAGAATAGGCAAAATTTCTGAATAAAACTTATACTAATAACCATACTGGTAACGGGCCGGGCCGGGCTTTTTACCGAATTTAGAGGCCCGGCCCGGCTCGGCAGGCCTCTCATTCGACAAGTTTTGAAAATTTCAAAAAACAAATAAGGGGGGACCCTTATGTGATTTTTTTCGATCAAAAAATTTTTTTCGAGTTTTTTTAAAAAATATTTTTTGATCAAACAGACAAACAGTCCAAAAAGCACAAAAAAATATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTACGCTAATAACGTAACTATCAATTTTCAGAGATTTTTCAGAATTTAAAAACATTTAGAAACAGAAAGTTTTCGAAACATTTTGAAGTTTTAATTTGAGAAAACTTTGAATTTTGAGATAAAATTTGCTCTAGTGATCTGAAGTTTTGATTTTTAGAATTAAAGTTTGAACTAATTCCGAAATTTCAAGTTTTTGGATTGCGAAATTCTAAAAAAATGAATTTGAATTTTTTCTGATTTCAGCTGTTCGAGATTTGCCGAACATTCCTATTTTTTAGAGTGTAAATTTCAAAGAAAATGCCCTTCAGAAAGAGAAAAAGAATGAGAAAATGGAT</canonical>
            <polymorphic>GTCCTTTTTGACCATCAAGTCCATCGTGTGCCGTTCGGTCCTCGGATCTTCTGGAACTTGCTCGGCGGATGGTGGTCTTACTGTAGCTGTAATTATTCGAATGTCATCATCGTCAATTTGGTCTTCAGAATCTGATAGCTTTATGACGTCATCAGATGGACCCGGTTGGCTGTTCATGTTTCCTTTTTGAAAATCTGGCAAAACAAATGATTCGACATTAAATTTATAAAAATTAAAGAGAGACAAGAGAGGAAGTTGAAACATTTAAAAATGGGAAAATTGAAATTTCAGACAATTTTTTAAAATTCAATACAAATAGAATAGGCAAAATTTCTGAATAAAACTTATACTAATAACCATACTGGTAACGGGCCGGGCCGGGCTTTTTACCGAATTTAGAGGCCCGGCCCGGCTCGGCAGGCCTCTCATTCGACAAGTTTTGAAAATTTCAAAAAACAAATAAGGGGGGACCCTTATGTGATTTTTTTCGATCAAAAAAWTTTTTTCGAGTTTTTTTAAAAAATATTTTTTGATCAAACAGACAAACAGTCCAAAAAGCACAAAAAAATATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTACGCTAATAACGTAACTATCAATTTTCAGAGATTTTTCAGAATTTAAAAACATTTAGAAACAGAAAGTTTTCGAAACATTTTGAAGTTTTAATTTGAGAAAACTTTGAATTTTGAGATAAAATTTGCTCTAGTGATCTGAAGTTTTGATTTTTAGAATTAAAGTTTGAACTAATTCCGAAATTTCAAGTTTTTGGATTGCGAAATTCTAAAAAAATGAATTTGAATTTTTTCTGATTTCAGCTGTTCGAGATTTGCCGAACATTCCTATTTTTTAGAGTGTAAATTTCAAAGAAAATGCCCTTCAGAAAGAGAAAAAGAATGAGAAAATGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>220 97 67 64 63 59 59 53 52 52 51 41 25 23 20 20 15 13 6</canonical_bands>
                <polymorphic_bands>220 150 67 64 63 59 59 52 52 51 41 25 23 20 20 15 13 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>106 90 78 64 59 53 52 51 50 47 41 35 32 25 24 23 20 20 19 17 16 15 13 10 10 10 8 6 6</canonical_bands>
                <polymorphic_bands>131 106 90 64 59 52 51 50 47 41 35 32 25 24 23 20 20 19 17 16 15 13 10 10 10 8 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGCAAAATTTCTGAATAAAACT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTTGGACTGTTTGTCTGTT</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>AGGCAAAATTTCTGAATAAAACTTATACTAATAACCATACTGGTAACGGGCCGGGCCGGGCTTTTTACCGAATTTAGAGGCCCGGCCCGGCTCGGCAGGCCTCTCATTCGACAAGTTTTGAAAATTTCAAAAAACAAATAAGGGGGGACCCTTATGTGATTTTTTTCGATCAAAAAATTTTTTTCGAGTTTTTTTAAAAAATATTTTTTGATCAAACAGACAAACAGTCCAAAAAG</canonical_amplicon>
		<polymorphic_amplicon>AGGCAAAATTTCTGAATAAAACTTATACTAATAACCATACTGGTAACGGGCCGGGCCGGGCTTTTTACCGAATTTAGAGGCCCGGCCCGGCTCGGCAGGCCTCTCATTCGACAAGTTTTGAAAATTTCAAAAAACAAATAAGGGGGGACCCTTATGTGATTTTTTTCGATCAAAAAAWTTTTTTCGAGTTTTTTTAAAAAATATTTTTTGATCAAACAGACAAACAGTCCAAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34222</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>426604</contig_pos>
        <strand>+</strand>
        <context>tatTTTTTGA[C/T]CAAACAGACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTCGATCAAAAAATTTTTTTCGAGTTTTTTTAAAAAATATTTTTTGA</left_flank>
        <right_flank>CAAACAGACAAACAGTCCAAAAAGCACAAAAAAATATAGAAAATTGTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGGTCCTCGGATCTTCTGGAACTTGCTCGGCGGATGGTGGTCTTACTGTAGCTGTAATTATTCGAATGTCATCATCGTCAATTTGGTCTTCAGAATCTGATAGCTTTATGACGTCATCAGATGGACCCGGTTGGCTGTTCATGTTTCCTTTTTGAAAATCTGGCAAAACAAATGATTCGACATTAAATTTATAAAAATTAAAGAGAGACAAGAGAGGAAGTTGAAACATTTAAAAATGGGAAAATTGAAATTTCAGACAATTTTTTAAAATTCAATACAAATAGAATAGGCAAAATTTCTGAATAAAACTTATACTAATAACCATACTGGTAACGGGCCGGGCCGGGCTTTTTACCGAATTTAGAGGCCCGGCCCGGCTCGGCAGGCCTCTCATTCGACAAGTTTTGAAAATTTCAAAAAACAAATAAGGGGGGACCCTTATGTGATTTTTTTCGATCAAAAAATTTTTTTCGAGTTTTTTTAAAAAATATTTTTTGATCAAACAGACAAACAGTCCAAAAAGCACAAAAAAATATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTACGCTAATAACGTAACTATCAATTTTCAGAGATTTTTCAGAATTTAAAAACATTTAGAAACAGAAAGTTTTCGAAACATTTTGAAGTTTTAATTTGAGAAAACTTTGAATTTTGAGATAAAATTTGCTCTAGTGATCTGAAGTTTTGATTTTTAGAATTAAAGTTTGAACTAATTCCGAAATTTCAAGTTTTTGGATTGCGAAATTCTAAAAAAATGAATTTGAATTTTTTCTGATTTCAGCTGTTCGAGATTTGCCGAACATTCCTATTTTTTAGAGTGTAAATTTCAAAGAAAATGCCCTTCAGAAAGAGAAAAAGAATGAGAAAATGGATGTGAAAAAAGAATAAGGGGAAAAAGAGAAAAAGC</canonical>
            <polymorphic>TCGGTCCTCGGATCTTCTGGAACTTGCTCGGCGGATGGTGGTCTTACTGTAGCTGTAATTATTCGAATGTCATCATCGTCAATTTGGTCTTCAGAATCTGATAGCTTTATGACGTCATCAGATGGACCCGGTTGGCTGTTCATGTTTCCTTTTTGAAAATCTGGCAAAACAAATGATTCGACATTAAATTTATAAAAATTAAAGAGAGACAAGAGAGGAAGTTGAAACATTTAAAAATGGGAAAATTGAAATTTCAGACAATTTTTTAAAATTCAATACAAATAGAATAGGCAAAATTTCTGAATAAAACTTATACTAATAACCATACTGGTAACGGGCCGGGCCGGGCTTTTTACCGAATTTAGAGGCCCGGCCCGGCTCGGCAGGCCTCTCATTCGACAAGTTTTGAAAATTTCAAAAAACAAATAAGGGGGGACCCTTATGTGATTTTTTTCGATCAAAAAATTTTTTTCGAGTTTTTTTAAAAAATATTTTTTGAYCAAACAGACAAACAGTCCAAAAAGCACAAAAAAATATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTACGCTAATAACGTAACTATCAATTTTCAGAGATTTTTCAGAATTTAAAAACATTTAGAAACAGAAAGTTTTCGAAACATTTTGAAGTTTTAATTTGAGAAAACTTTGAATTTTGAGATAAAATTTGCTCTAGTGATCTGAAGTTTTGATTTTTAGAATTAAAGTTTGAACTAATTCCGAAATTTCAAGTTTTTGGATTGCGAAATTCTAAAAAAATGAATTTGAATTTTTTCTGATTTCAGCTGTTCGAGATTTGCCGAACATTCCTATTTTTTAGAGTGTAAATTTCAAAGAAAATGCCCTTCAGAAAGAGAAAAAGAATGAGAAAATGGATGTGAAAAAAGAATAAGGGGAAAAAGAGAAAAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>445 269 234 42 10</canonical_bands>
                <polymorphic_bands>445 311 234 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCTTTTTACCGAATTTAGAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTTTGTCATTTTGAACC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GGCTTTTTACCGAATTTAGAGGCCCGGCCCGGCTCGGCAGGCCTCTCATTCGACAAGTTTTGAAAATTTCAAAAAACAAATAAGGGGGGACCCTTATGTGATTTTTTTCGATCAAAAAATTTTTTTCGAGTTTTTTTAAAAAATATTTTTTGATCAAACAGACAAACAGTCCAAAAAGCACAAAAAAATATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>GGCTTTTTACCGAATTTAGAGGCCCGGCCCGGCTCGGCAGGCCTCTCATTCGACAAGTTTTGAAAATTTCAAAAAACAAATAAGGGGGGACCCTTATGTGATTTTTTTCGATCAAAAAATTTTTTTCGAGTTTTTTTAAAAAATATTTTTTGAYCAAACAGACAAACAGTCCAAAAAGCACAAAAAAATATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34223</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>426721</contig_pos>
        <strand></strand>
        <context>GGCGGGCCGG[C/G]CCGGAATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTTCAAAATGACAAAATTTTTGCTACCGGGCCCGGGCTTTGGCGGGCCGG</left_flank>
        <right_flank>CCGGAATTTTACAAGTACGCTAATAACGTAACTATCAATTTTCAGAGATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGATGGACCCGGTTGGCTGTTCATGTTTCCTTTTTGAAAATCTGGCAAAACAAATGATTCGACATTAAATTTATAAAAATTAAAGAGAGACAAGAGAGGAAGTTGAAACATTTAAAAATGGGAAAATTGAAATTTCAGACAATTTTTTAAAATTCAATACAAATAGAATAGGCAAAATTTCTGAATAAAACTTATACTAATAACCATACTGGTAACGGGCCGGGCCGGGCTTTTTACCGAATTTAGAGGCCCGGCCCGGCTCGGCAGGCCTCTCATTCGACAAGTTTTGAAAATTTCAAAAAACAAATAAGGGGGGACCCTTATGTGATTTTTTTCGATCAAAAAATTTTTTTCGAGTTTTTTTAAAAAATATTTTTTGATCAAACAGACAAACAGTCCAAAAAGCACAAAAAAATATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTACGCTAATAACGTAACTATCAATTTTCAGAGATTTTTCAGAATTTAAAAACATTTAGAAACAGAAAGTTTTCGAAACATTTTGAAGTTTTAATTTGAGAAAACTTTGAATTTTGAGATAAAATTTGCTCTAGTGATCTGAAGTTTTGATTTTTAGAATTAAAGTTTGAACTAATTCCGAAATTTCAAGTTTTTGGATTGCGAAATTCTAAAAAAATGAATTTGAATTTTTTCTGATTTCAGCTGTTCGAGATTTGCCGAACATTCCTATTTTTTAGAGTGTAAATTTCAAAGAAAATGCCCTTCAGAAAGAGAAAAAGAATGAGAAAATGGATGTGAAAAAAGAATAAGGGGAAAAAGAGAAAAAGCAATAAATAAAAGAATAGAGAAATAAATAAAAATGAGGAATCGATGAGAAAAACAGCTAAGCAAGAAAATCAAGGATGGTGTTTAATGAAATTTGTTTATTAGTTTTTAATGATTTCC</canonical>
            <polymorphic>TCAGATGGACCCGGTTGGCTGTTCATGTTTCCTTTTTGAAAATCTGGCAAAACAAATGATTCGACATTAAATTTATAAAAATTAAAGAGAGACAAGAGAGGAAGTTGAAACATTTAAAAATGGGAAAATTGAAATTTCAGACAATTTTTTAAAATTCAATACAAATAGAATAGGCAAAATTTCTGAATAAAACTTATACTAATAACCATACTGGTAACGGGCCGGGCCGGGCTTTTTACCGAATTTAGAGGCCCGGCCCGGCTCGGCAGGCCTCTCATTCGACAAGTTTTGAAAATTTCAAAAAACAAATAAGGGGGGACCCTTATGTGATTTTTTTCGATCAAAAAATTTTTTTCGAGTTTTTTTAAAAAATATTTTTTGATCAAACAGACAAACAGTCCAAAAAGCACAAAAAAATATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCCGGGCTTTGGCGGGCCGGSCCGGAATTTTACAAGTACGCTAATAACGTAACTATCAATTTTCAGAGATTTTTCAGAATTTAAAAACATTTAGAAACAGAAAGTTTTCGAAACATTTTGAAGTTTTAATTTGAGAAAACTTTGAATTTTGAGATAAAATTTGCTCTAGTGATCTGAAGTTTTGATTTTTAGAATTAAAGTTTGAACTAATTCCGAAATTTCAAGTTTTTGGATTGCGAAATTCTAAAAAAATGAATTTGAATTTTTTCTGATTTCAGCTGTTCGAGATTTGCCGAACATTCCTATTTTTTAGAGTGTAAATTTCAAAGAAAATGCCCTTCAGAAAGAGAAAAAGAATGAGAAAATGGATGTGAAAAAAGAATAAGGGGAAAAAGAGAAAAAGCAATAAATAAAAGAATAGAGAAATAAATAAAAATGAGGAATCGATGAGAAAAACAGCTAAGCAAGAAAATCAAGGATGGTGTTTAATGAAATTTGTTTATTAGTTTTTAATGATTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>499 218 212 25 20 11 5 5 5</canonical_bands>
                <polymorphic_bands>519 218 212 25 11 5 5 5</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>499 218 212 25 20 11 5 5 5</canonical_bands>
                <polymorphic_bands>519 218 212 25 11 5 5 5</polymorphic_bands>
            </assay>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 221 209 25 16 14 5 5 4</canonical_bands>
                <polymorphic_bands>505 221 209 25 16 14 5 5</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>258 203 181 168 62 41 20 18 10 9 6 5 5 5 5 4</canonical_bands>
                <polymorphic_bands>262 203 181 168 62 41 20 18 10 9 6 5 5 5 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCCGGCC</site>
                <isoschizomers>
                    <enzyme>FseI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCCGGC</site>
                <isoschizomers>
                    <enzyme>MroNI</enzyme>
                    <enzyme>NaeI</enzyme>
                    <enzyme>NgoAIV</enzyme>
                    <enzyme>NgoMIV</enzyme>
                    <enzyme>PdiI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAGACAAACAGTCCAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTCAAAATTCAAAGTTTTCTCAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AACAGACAAACAGTCCAAAAAGCACAAAAAAATATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTACGCTAATAACGTAACTATCAATTTTCAGAGATTTTTCAGAATTTAAAAACATTTAGAAACAGAAAGTTTTCGAAACATTTTGAAGTTTTAATTTGAGAAAACTTTGAATTTTGAG</canonical_amplicon>
		<polymorphic_amplicon>AACAGACAAACAGTCCAAAAAGCACAAAAAAATATAGAAAATTGTATTGAGAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCCGGGCTTTGGCGGGCCGGSCCGGAATTTTACAAGTACGCTAATAACGTAACTATCAATTTTCAGAGATTTTTCAGAATTTAAAAACATTTAGAAACAGAAAGTTTTCGAAACATTTTGAAGTTTTAATTTGAGAAAACTTTGAATTTTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34224</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>533167</contig_pos>
        <strand></strand>
        <context>AGGCGCGATT[G/A]GTGAAAAACG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATGTGTTATTAGAAGCACTTCTACGAAAATTAGAATCTGAGGCGCGATT</left_flank>
        <right_flank>GTGAAAAACGGCTAAATGACAGTCGAAGATTCGCTGACTTTTCTCGAAGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAAGTTCAATTTCATATTTTTATTTCCAAATTGGTAATAAATGAGCTTGTATTCAAGATTCAAGAGAATCATGTGACCGCAGAACTCTCCAATCTGGGCTTTGTGCTTAAACTTAACTTATTGTCCTTCTCCTTTGAAGTTCAATGGAATCGAACAGTCGGAACCCGTTGGAAAACAGACTTGAAGGTTTTGATTGGAAATCATTCAGAAAACAATTTCTCATACCCCCACTAGATTATAGGAAATGATAGATTCTTATTTTCCTAAAATAGGACCACCTCAAAAAATAGGTTGTTAAACGACTGCTAAATGACAATCGAAGAGGCGCTGACTGGTCAATGACTGGTGGTTGGCGGGCCAAATTTCTGTAGAATGGAAAATTTGGTTGAAAAAAGATTTTTCTCTTAAAACATGATAAAAGTCATAGAGGGATCTGGGAATCTATAAAATGTGTTATTAGAAGCACTTCTACGAAAATTAGAATCTGAGGCGCGATTGGTGAAAAACGGCTAAATGACAGTCGAAGATTCGCTGACTTTTCTCGAAGAGGCGCTTTCTTTTTTGGGTGCTCAATTCATGTTACGAACTCATCAATTTTACTTATTCTGAAAGAAAGTCATATAAAAGCGGAAAATACTGTTCAATGAGAGAAATGTTGAGAAACGAAAGAAATCGAAAACGAGAAACGAAGAAGGAAAAAAGAACGAAAGGAACGAGAAAAAATCTTCGCATTTTGAAATTTGAATTTTTATAAAGTTGGAATTTTGCGAAAACACAAATAGAAAATCGAAGTTCTGTTCCCTATAGAATTTGTAATTTCTTATGTGTTTTCTCTCATTCTAATCATGAAAATTCAACTTTGAAAATTTTGGAGTTATTTTTTCAATCTACAGTACCGGTCAAAAGGTTGTAAACGCAAGGTTTTTTGAGCATAACTACTTTTTGAGAGCAGATATCGAGCCAAAATTTTCACCAGATATTTCTGTAAAGGTTTGCCA</canonical>
            <polymorphic>ATCAAGTTCAATTTCATATTTTTATTTCCAAATTGGTAATAAATGAGCTTGTATTCAAGATTCAAGAGAATCATGTGACCGCAGAACTCTCCAATCTGGGCTTTGTGCTTAAACTTAACTTATTGTCCTTCTCCTTTGAAGTTCAATGGAATCGAACAGTCGGAACCCGTTGGAAAACAGACTTGAAGGTTTTGATTGGAAATCATTCAGAAAACAATTTCTCATACCCCCACTAGATTATAGGAAATGATAGATTCTTATTTTCCTAAAATAGGACCACCTCAAAAAATAGGTTGTTAAACGACTGCTAAATGACAATCGAAGAGGCGCTGACTGGTCAATGACTGGTGGTTGGCGGGCCAAATTTCTGTAGAATGGAAAATTTGGTTGAAAAAAGATTTTTCTCTTAAAACATGATAAAAGTCATAGAGGGATCTGGGAATCTATAAAATGTGTTATTAGAAGCACTTCTACGAAAATTAGAATCTGAGGCGCGATTRGTGAAAAACGGCTAAATGACAGTCGAAGATTCGCTGACTTTTCTCGAAGAGGCGCTTTCTTTTTTGGGTGCTCAATTCATGTTACGAACTCATCAATTTTACTTATTCTGAAAGAAAGTCATATAAAAGCGGAAAATACTGTTCAATGAGAGAAATGTTGAGAAACGAAAGAAATCGAAAACGAGAAACGAAGAAGGAAAAAAGAACGAAAGGAACGAGAAAAAATCTTCGCATTTTGAAATTTGAATTTTTATAAAGTTGGAATTTTGCGAAAACACAAATAGAAAATCGAAGTTCTGTTCCCTATAGAATTTGTAATTTCTTATGTGTTTTCTCTCATTCTAATCATGAAAATTCAACTTTGAAAATTTTGGAGTTATTTTTTCAATCTACAGTACCGGTCAAAAGGTTGTAAACGCAAGGTTTTTTGAGCATAACTACTTTTTGAGAGCAGATATCGAGCCAAAATTTTCACCAGATATTTCTGTAAAGGTTTGCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGATTTTTCTCTTAAAACATGA</pcr_primer_p1>
		<pcr_primer_p2>ACAGTATTTTCCGCTTTTATATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAGATTTTTCTCTTAAAACATGATAAAAGTCATAGAGGGATCTGGGAATCTATAAAATGTGTTATTAGAAGCACTTCTACGAAAATTAGAATCTGAGGCGCGATTGGTGAAAAACGGCTAAATGACAGTCGAAGATTCGCTGACTTTTCTCGAAGAGGCGCTTTCTTTTTTGGGTGCTCAATTCATGTTACGAACTCATCAATTTTACTTATTCTGAAAGAAAGTCATATAAAAGCGGAAAATACTGT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGATTTTTCTCTTAAAACATGATAAAAGTCATAGAGGGATCTGGGAATCTATAAAATGTGTTATTAGAAGCACTTCTACGAAAATTAGAATCTGAGGCGCGATTRGTGAAAAACGGCTAAATGACAGTCGAAGATTCGCTGACTTTTCTCGAAGAGGCGCTTTCTTTTTTGGGTGCTCAATTCATGTTACGAACTCATCAATTTTACTTATTCTGAAAGAAAGTCATATAAAAGCGGAAAATACTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34225</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>612544</contig_pos>
        <strand>+</strand>
        <context>TCGTTATAAC[A/G]TAAATTTGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCAATTTCTGACGAATACCTCCGAGAAGACGTCCTTCTTCGTTATAAC</left_flank>
        <right_flank>TAAATTTGACTGAAATTCCAGCCATGACGATTTTAGCCTACGATCCGACG</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAAAGTGAACATATGAAAATTTCAGCATTTTTCAGTAATCAAAAAATTCTCAAAAAGTCTTTGTATTCAAAAATTGCAATGTTAAAAGTTCTATGTCAAATTCGAATCAAGAAGAACTGACAAATGTTAGAATCCAAAAACTAACACAAAAAATATGAAACTGTGAAAAATAATTTTTTCAGTTTTTTTCGAAAAAAAAAATTTCCTGTTCCACTATTTCAAGAAATTTGAATTACCTCCCGAAAAAATGGTTATCACATAAACACATAGATTTTCAAGCTCTAAAATTCCGGATGTCCCAAAGAATCGTTTCTTAAATTTTTTCAAATTTTTCCAGCACCAACAAACTCTCCTATTTCAAAGGTCCCCAATGCCTTATCTGGTTTGCCTATTGCACATTTTTTGGACTACAGTACGCCCTGGGAACTTATTTCACACTACAAAGAGATTCAATTTCTGACGAATACCTCCGAGAAGACGTCCTTCTTCGTTATAACGTAAATTTGACTGAAATTCCAGCCATGACGATTTTAGCCTACGATCCGACGGATGGATCGATTCGGTGGAGGAACATTTTTGGAATTTTAAATATTTGTGCAATTTGCAATTTTCAATACGGAATTATGATTTATTGCGGATGGGCGATGCATGCAAAAATGGAGGATAAGATTAAGAACTTTTCGGAGACTTTGAGAAAACATCATAAGCAATTTTTTAAGACCCTAGTCTTGCAGGTAAGGTGTTTTTCGTGGAAATTAGAAATTCACAAAGACAATACCAAAATATGGAAGATCTTAGAATTCATTGGTAGATGGAAATCATGAAACAGAAAAAAAATTCCAGATCACCGCCCCTACCATAATCCTATTCATTCCAATTACAATTATAATTTTTCTTCCATTATTCAATTTAGATGTTATCAGTGTTCCATCTGGAGTTATGCTTTGCAGTTTCACATTATATCCAGCTTCAGACTCTTTGATTGTCATGTACGTCGT</canonical>
            <polymorphic>TCGAAAGTGAACATATGAAAATTTCAGCATTTTTCAGTAATCAAAAAATTCTCAAAAAGTCTTTGTATTCAAAAATTGCAATGTTAAAAGTTCTATGTCAAATTCGAATCAAGAAGAACTGACAAATGTTAGAATCCAAAAACTAACACAAAAAATATGAAACTGTGAAAAATAATTTTTTCAGTTTTTTTCGAAAAAAAAAATTTCCTGTTCCACTATTTCAAGAAATTTGAATTACCTCCCGAAAAAATGGTTATCACATAAACACATAGATTTTCAAGCTCTAAAATTCCGGATGTCCCAAAGAATCGTTTCTTAAATTTTTTCAAATTTTTCCAGCACCAACAAACTCTCCTATTTCAAAGGTCCCCAATGCCTTATCTGGTTTGCCTATTGCACATTTTTTGGACTACAGTACGCCCTGGGAACTTATTTCACACTACAAAGAGATTCAATTTCTGACGAATACCTCCGAGAAGACGTCCTTCTTCGTTATAACRTAAATTTGACTGAAATTCCAGCCATGACGATTTTAGCCTACGATCCGACGGATGGATCGATTCGGTGGAGGAACATTTTTGGAATTTTAAATATTTGTGCAATTTGCAATTTTCAATACGGAATTATGATTTATTGCGGATGGGCGATGCATGCAAAAATGGAGGATAAGATTAAGAACTTTTCGGAGACTTTGAGAAAACATCATAAGCAATTTTTTAAGACCCTAGTCTTGCAGGTAAGGTGTTTTTCGTGGAAATTAGAAATTCACAAAGACAATACCAAAATATGGAAGATCTTAGAATTCATTGGTAGATGGAAATCATGAAACAGAAAAAAAATTCCAGATCACCGCCCCTACCATAATCCTATTCATTCCAATTACAATTATAATTTTTCTTCCATTATTCAATTTAGATGTTATCAGTGTTCCATCTGGAGTTATGCTTTGCAGTTTCACATTATATCCAGCTTCAGACTCTTTGATTGTCATGTACGTCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>496 480 18 6</canonical_bands>
                <polymorphic_bands>514 480 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACAAACTCTCCTATTTCAAAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTAAAATTCCAAAAATGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAACAAACTCTCCTATTTCAAAGGTCCCCAATGCCTTATCTGGTTTGCCTATTGCACATTTTTTGGACTACAGTACGCCCTGGGAACTTATTTCACACTACAAAGAGATTCAATTTCTGACGAATACCTCCGAGAAGACGTCCTTCTTCGTTATAACGTAAATTTGACTGAAATTCCAGCCATGACGATTTTAGCCTACGATCCGACGGATGGATCGATTCGGTGGAGGAACATTTTTGGAATTTTAAAT</canonical_amplicon>
		<polymorphic_amplicon>CAACAAACTCTCCTATTTCAAAGGTCCCCAATGCCTTATCTGGTTTGCCTATTGCACATTTTTTGGACTACAGTACGCCCTGGGAACTTATTTCACACTACAAAGAGATTCAATTTCTGACGAATACCTCCGAGAAGACGTCCTTCTTCGTTATAACRTAAATTTGACTGAAATTCCAGCCATGACGATTTTAGCCTACGATCCGACGGATGGATCGATTCGGTGGAGGAACATTTTTGGAATTTTAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34226</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>641608</contig_pos>
        <strand>+</strand>
        <context>AGCTTGACGA[A/G]AAGAGGAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACCTAGATTGAGCGAGCACTACCCCTGAAAAGTGGGCGGAGCTTGACGA</left_flank>
        <right_flank>AAGAGGAAGACGTCACCGTTTGGGAAGAAGTGAAAAACAGCAATTAGAGG</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGACACGAGAAAACGACCAGATTTGCCACATTAGCCATCATCAAGACAGTGTAGTTTCCGAAGTTTCTGGATGCGTCGGAGAAGATGAGCTTGACGAGTTCGGCATTGGTGAACAGCATTGCAAAGAATGCGACTACGTTCACCCAGGCGGTGATCTCCACCAAGGCAACCAACATGGTGGACCTGGAAAGTTCGGGAAGAATTGAGAATGTTCTTGTAGGTTTGAGAGGTATAGAAGTTTAGGGCGCGTTCTGGAAGGTTCTTGAAAAGTCTAGAATATTCTGGAAGGATCTAGAAGGTTTTAGAGCTCCGGCTAACTTCAAACAGCGGTCTTTAAGCTTGGAAAGAAATCTAGAAGGTTTTAAAAGGTTCTAGACCTCTAGATAGCTTAATATAACTCAAATCAGCTTAAGATAGCCTTTCAGAACCAGAACAAATGAGTGAATTGACCTAGATTGAGCGAGCACTACCCCTGAAAAGTGGGCGGAGCTTGACGAGAAGAGGAAGACGTCACCGTTTGGGAAGAAGTGAAAAACAGCAATTAGAGGGTGTAAAGGGGGAATTTTATCACTATTTTTTGTTTATCGAGAATGCTCAAAGCCAGGAGAATATATGAAATGCGTCATTAGGAGGTCATTTGGGAGTTTATATGTTTTTAAGGATCAGAGATCTTTGACGATATTTTTTTGATGTACAAACTAGTTACAGTAGGAAAATGGGTACTGTAGTTTGGATGCTTTGCATTCTGACGAGCTGGTGTTTGCGGAAATCTACGGTAGTGGGGATTTTTTTTTAAATAATGAAAACAGAGGTCCAATTAAGCTATGGATTCTTTTTTTAAGAATATCATATTTTTGAAACGCCTAAAAATTTTAATCTCGAAATTTTTCATTTTGGTTTGTATTATGATGTTACTCATGAATAATTAGAGTGTCTGGAGGTCTAGTCAAAATTCCTCAATTATTTAAAAAAGAAAATAGAAATTAGAAAATCGCAAA</canonical>
            <polymorphic>GAAGACACGAGAAAACGACCAGATTTGCCACATTAGCCATCATCAAGACAGTGTAGTTTCCGAAGTTTCTGGATGCGTCGGAGAAGATGAGCTTGACGAGTTCGGCATTGGTGAACAGCATTGCAAAGAATGCGACTACGTTCACCCAGGCGGTGATCTCCACCAAGGCAACCAACATGGTGGACCTGGAAAGTTCGGGAAGAATTGAGAATGTTCTTGTAGGTTTGAGAGGTATAGAAGTTTAGGGCGCGTTCTGGAAGGTTCTTGAAAAGTCTAGAATATTCTGGAAGGATCTAGAAGGTTTTAGAGCTCCGGCTAACTTCAAACAGCGGTCTTTAAGCTTGGAAAGAAATCTAGAAGGTTTTAAAAGGTTCTAGACCTCTAGATAGCTTAATATAACTCAAATCAGCTTAAGATAGCCTTTCAGAACCAGAACAAATGAGTGAATTGACCTAGATTGAGCGAGCACTACCCCTGAAAAGTGGGCGGAGCTTGACGARAAGAGGAAGACGTCACCGTTTGGGAAGAAGTGAAAAACAGCAATTAGAGGGTGTAAAGGGGGAATTTTATCACTATTTTTTGTTTATCGAGAATGCTCAAAGCCAGGAGAATATATGAAATGCGTCATTAGGAGGTCATTTGGGAGTTTATATGTTTTTAAGGATCAGAGATCTTTGACGATATTTTTTTGATGTACAAACTAGTTACAGTAGGAAAATGGGTACTGTAGTTTGGATGCTTTGCATTCTGACGAGCTGGTGTTTGCGGAAATCTACGGTAGTGGGGATTTTTTTTTAAATAATGAAAACAGAGGTCCAATTAAGCTATGGATTCTTTTTTTAAGAATATCATATTTTTGAAACGCCTAAAAATTTTAATCTCGAAATTTTTCATTTTGGTTTGTATTATGATGTTACTCATGAATAATTAGAGTGTCTGGAGGTCTAGTCAAAATTCCTCAATTATTTAAAAAAGAAAATAGAAATTAGAAAATCGCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTTAAGATAGCCTTTCAGAAC</pcr_primer_p1>
		<pcr_primer_p2>ACATATAAACTCCCAAATGACCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGCTTAAGATAGCCTTTCAGAACCAGAACAAATGAGTGAATTGACCTAGATTGAGCGAGCACTACCCCTGAAAAGTGGGCGGAGCTTGACGAGAAGAGGAAGACGTCACCGTTTGGGAAGAAGTGAAAAACAGCAATTAGAGGGTGTAAAGGGGGAATTTTATCACTATTTTTTGTTTATCGAGAATGCTCAAAGCCAGGAGAATATATGAAATGCGTCATTAGGAGGTCATTTGGGAGTTTATATGT</canonical_amplicon>
		<polymorphic_amplicon>AGCTTAAGATAGCCTTTCAGAACCAGAACAAATGAGTGAATTGACCTAGATTGAGCGAGCACTACCCCTGAAAAGTGGGCGGAGCTTGACGARAAGAGGAAGACGTCACCGTTTGGGAAGAAGTGAAAAACAGCAATTAGAGGGTGTAAAGGGGGAATTTTATCACTATTTTTTGTTTATCGAGAATGCTCAAAGCCAGGAGAATATATGAAATGCGTCATTAGGAGGTCATTTGGGAGTTTATATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34227</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>645769</contig_pos>
        <strand></strand>
        <context>ctcacacaaa[T/C]tttatattgt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CACTGTTCAGCAGCTCCTACAGTAACCTCAGACTTAGTAACTCACACAAA</left_flank>
        <right_flank>TTTATATTGTTTTGTAGCACTTTTTAAATGCTACAATTTGCAATTTATTT</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACCAAAACCATAAGTGTCTTCCCTTAAAATAAACCAAATATTTACGACGGCTGATTGAAAAGCAACGATAGACAAACTGCACAGCAATTAGGGTCAAGGCTTGGCTGTAGCTAGTACCGTATACCGCTGAAAACAGAGTTTTCAAATTCTGAAGAACCTATGTCTAACTTACACAACAAAAAGCGCATGACAATACGTGGCAATTCAAGATAATTGGTAGATGTGAACACAAATAGAACATACTTCTCCGTTGAGATTATCTAAAAAAATAACATTGTTGTTCAACGTATCCTGAAGGAGTTGTTTACATACCAAGTCCGTCAAATTTTATATTCTTTTGTAGCCCTTTTCAAATCCTACAATTTGAACTTTGTGTCAGTCAAAAATATCATGTTTGAGGTGATTTACAAGGTTTTAAAGAACCTGTATCCCATAGTTCTTCGGACATCACTGTTCAGCAGCTCCTACAGTAACCTCAGACTTAGTAACTCACACAAATTTTATATTGTTTTGTAGCACTTTTTAAATGCTACAATTTGCAATTTATTTCATTGAAAAATGTAGAGCTAGAAGCAAGTTACCAGCCTTTGAGCAAACTGCGTATCAAAGCTTTTCTGACATAGCTGTTCAGTAGTTTCTACTGTTACCCGAGACTCAGAAAACTTGATTACATCTTATATTTTCTTGTAGCTCTTTTCACATCCTACAACTTAGTTTTTAGTTTAGCTCAAAATATACCGTTTGAGCAGATTTATAAAGCTTGGAACTATTGGAGCCAAATAATCTTACTGTAGTCTCCCCACGGAAAGCCTAGACGTATCAAGTTAGTTGAATTTTAATATCATTTTGAAGCGTTTTCAAGCTCTATTTTTTAATTTCAATTTAATGAAAAATGGCCGTTTCCAATTCCGCATTACATTTTATATTTCAAGAACCTAATATTCCTATTTTGATGAATTTTGGGCTATTCAAAGTTTTCCGATTGAGTTGAAACCTGGA</canonical>
            <polymorphic>TACCAAAACCATAAGTGTCTTCCCTTAAAATAAACCAAATATTTACGACGGCTGATTGAAAAGCAACGATAGACAAACTGCACAGCAATTAGGGTCAAGGCTTGGCTGTAGCTAGTACCGTATACCGCTGAAAACAGAGTTTTCAAATTCTGAAGAACCTATGTCTAACTTACACAACAAAAAGCGCATGACAATACGTGGCAATTCAAGATAATTGGTAGATGTGAACACAAATAGAACATACTTCTCCGTTGAGATTATCTAAAAAAATAACATTGTTGTTCAACGTATCCTGAAGGAGTTGTTTACATACCAAGTCCGTCAAATTTTATATTCTTTTGTAGCCCTTTTCAAATCCTACAATTTGAACTTTGTGTCAGTCAAAAATATCATGTTTGAGGTGATTTACAAGGTTTTAAAGAACCTGTATCCCATAGTTCTTCGGACATCACTGTTCAGCAGCTCCTACAGTAACCTCAGACTTAGTAACTCACACAAAYTTTATATTGTTTTGTAGCACTTTTTAAATGCTACAATTTGCAATTTATTTCATTGAAAAATGTAGAGCTAGAAGCAAGTTACCAGCCTTTGAGCAAACTGCGTATCAAAGCTTTTCTGACATAGCTGTTCAGTAGTTTCTACTGTTACCCGAGACTCAGAAAACTTGATTACATCTTATATTTTCTTGTAGCTCTTTTCACATCCTACAACTTAGTTTTTAGTTTAGCTCAAAATATACCGTTTGAGCAGATTTATAAAGCTTGGAACTATTGGAGCCAAATAATCTTACTGTAGTCTCCCCACGGAAAGCCTAGACGTATCAAGTTAGTTGAATTTTAATATCATTTTGAAGCGTTTTCAAGCTCTATTTTTTAATTTCAATTTAATGAAAAATGGCCGTTTCCAATTCCGCATTACATTTTATATTTCAAGAACCTAATATTCCTATTTTGATGAATTTTGGGCTATTCAAAGTTTTCCGATTGAGTTGAAACCTGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>335 179 173 145 124 44</canonical_bands>
                <polymorphic_bands>508 179 145 124 44</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>291 136 112 86 59 57 51 44 42 37 37 25 10 7 6</canonical_bands>
                <polymorphic_bands>291 173 112 86 59 57 51 44 42 37 25 10 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTACATACCAAGTCCGTCAA</pcr_primer_p1>
		<pcr_primer_p2>TTATTTGGCTCCAATAGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>480</pcr_amplicon_size>
		<canonical_amplicon>TTTACATACCAAGTCCGTCAAATTTTATATTCTTTTGTAGCCCTTTTCAAATCCTACAATTTGAACTTTGTGTCAGTCAAAAATATCATGTTTGAGGTGATTTACAAGGTTTTAAAGAACCTGTATCCCATAGTTCTTCGGACATCACTGTTCAGCAGCTCCTACAGTAACCTCAGACTTAGTAACTCACACAAATTTTATATTGTTTTGTAGCACTTTTTAAATGCTACAATTTGCAATTTATTTCATTGAAAAATGTAGAGCTAGAAGCAAGTTACCAGCCTTTGAGCAAACTGCGTATCAAAGCTTTTCTGACATAGCTGTTCAGTAGTTTCTACTGTTACCCGAGACTCAGAAAACTTGATTACATCTTATATTTTCTTGTAGCTCTTTTCACATCCTACAACTTAGTTTTTAGTTTAGCTCAAAATATACCGTTTGAGCAGATTTATAAAGCTTGGAACTATTGGAGCCAAATAA</canonical_amplicon>
		<polymorphic_amplicon>TTTACATACCAAGTCCGTCAAATTTTATATTCTTTTGTAGCCCTTTTCAAATCCTACAATTTGAACTTTGTGTCAGTCAAAAATATCATGTTTGAGGTGATTTACAAGGTTTTAAAGAACCTGTATCCCATAGTTCTTCGGACATCACTGTTCAGCAGCTCCTACAGTAACCTCAGACTTAGTAACTCACACAAAYTTTATATTGTTTTGTAGCACTTTTTAAATGCTACAATTTGCAATTTATTTCATTGAAAAATGTAGAGCTAGAAGCAAGTTACCAGCCTTTGAGCAAACTGCGTATCAAAGCTTTTCTGACATAGCTGTTCAGTAGTTTCTACTGTTACCCGAGACTCAGAAAACTTGATTACATCTTATATTTTCTTGTAGCTCTTTTCACATCCTACAACTTAGTTTTTAGTTTAGCTCAAAATATACCGTTTGAGCAGATTTATAAAGCTTGGAACTATTGGAGCCAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34228</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>645980</contig_pos>
        <strand></strand>
        <context>catcctacaa[C/T]ttagttttta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACTTGATTACATCTTATATTTTCTTGTAGCTCTTTTCACATCCTACAA</left_flank>
        <right_flank>TTAGTTTTTAGTTTAGCTCAAAATATACCGTTTGAGCAGATTTATAAAGC</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATTGGTAGATGTGAACACAAATAGAACATACTTCTCCGTTGAGATTATCTAAAAAAATAACATTGTTGTTCAACGTATCCTGAAGGAGTTGTTTACATACCAAGTCCGTCAAATTTTATATTCTTTTGTAGCCCTTTTCAAATCCTACAATTTGAACTTTGTGTCAGTCAAAAATATCATGTTTGAGGTGATTTACAAGGTTTTAAAGAACCTGTATCCCATAGTTCTTCGGACATCACTGTTCAGCAGCTCCTACAGTAACCTCAGACTTAGTAACTCACACAAATTTTATATTGTTTTGTAGCACTTTTTAAATGCTACAATTTGCAATTTATTTCATTGAAAAATGTAGAGCTAGAAGCAAGTTACCAGCCTTTGAGCAAACTGCGTATCAAAGCTTTTCTGACATAGCTGTTCAGTAGTTTCTACTGTTACCCGAGACTCAGAAAACTTGATTACATCTTATATTTTCTTGTAGCTCTTTTCACATCCTACAACTTAGTTTTTAGTTTAGCTCAAAATATACCGTTTGAGCAGATTTATAAAGCTTGGAACTATTGGAGCCAAATAATCTTACTGTAGTCTCCCCACGGAAAGCCTAGACGTATCAAGTTAGTTGAATTTTAATATCATTTTGAAGCGTTTTCAAGCTCTATTTTTTAATTTCAATTTAATGAAAAATGGCCGTTTCCAATTCCGCATTACATTTTATATTTCAAGAACCTAATATTCCTATTTTGATGAATTTTGGGCTATTCAAAGTTTTCCGATTGAGTTGAAACCTGGATATATGCTTCTGGATAGACAGATTTCTATTGATTAGTTGATGCCTTTTTTAATTATGATTCAGAAGTCTTCTGAAGACGTTCCTCAGTTGCACAACTCATTTGTAGAAGCTGCAGGATAAAGAGGCTGGAAGGAGAAGGAAAAGCCGCTAATGTGTATACGTCATTTCTACCACGCTCTCTATGGTCAGCCGTGGTTTAGTGGCTAGTGAG</canonical>
            <polymorphic>TAATTGGTAGATGTGAACACAAATAGAACATACTTCTCCGTTGAGATTATCTAAAAAAATAACATTGTTGTTCAACGTATCCTGAAGGAGTTGTTTACATACCAAGTCCGTCAAATTTTATATTCTTTTGTAGCCCTTTTCAAATCCTACAATTTGAACTTTGTGTCAGTCAAAAATATCATGTTTGAGGTGATTTACAAGGTTTTAAAGAACCTGTATCCCATAGTTCTTCGGACATCACTGTTCAGCAGCTCCTACAGTAACCTCAGACTTAGTAACTCACACAAATTTTATATTGTTTTGTAGCACTTTTTAAATGCTACAATTTGCAATTTATTTCATTGAAAAATGTAGAGCTAGAAGCAAGTTACCAGCCTTTGAGCAAACTGCGTATCAAAGCTTTTCTGACATAGCTGTTCAGTAGTTTCTACTGTTACCCGAGACTCAGAAAACTTGATTACATCTTATATTTTCTTGTAGCTCTTTTCACATCCTACAAYTTAGTTTTTAGTTTAGCTCAAAATATACCGTTTGAGCAGATTTATAAAGCTTGGAACTATTGGAGCCAAATAATCTTACTGTAGTCTCCCCACGGAAAGCCTAGACGTATCAAGTTAGTTGAATTTTAATATCATTTTGAAGCGTTTTCAAGCTCTATTTTTTAATTTCAATTTAATGAAAAATGGCCGTTTCCAATTCCGCATTACATTTTATATTTCAAGAACCTAATATTCCTATTTTGATGAATTTTGGGCTATTCAAAGTTTTCCGATTGAGTTGAAACCTGGATATATGCTTCTGGATAGACAGATTTCTATTGATTAGTTGATGCCTTTTTTAATTATGATTCAGAAGTCTTCTGAAGACGTTCCTCAGTTGCACAACTCATTTGTAGAAGCTGCAGGATAAAGAGGCTGGAAGGAGAAGGAAAAGCCGCTAATGTGTATACGTCATTTCTACCACGCTCTCTATGGTCAGCCGTGGTTTAGTGGCTAGTGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>372 265 173 128 56 6</canonical_bands>
                <polymorphic_bands>428 265 173 128 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTACATACCAAGTCCGTCAA</pcr_primer_p1>
		<pcr_primer_p2>TTATTTGGCTCCAATAGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>480</pcr_amplicon_size>
		<canonical_amplicon>TTTACATACCAAGTCCGTCAAATTTTATATTCTTTTGTAGCCCTTTTCAAATCCTACAATTTGAACTTTGTGTCAGTCAAAAATATCATGTTTGAGGTGATTTACAAGGTTTTAAAGAACCTGTATCCCATAGTTCTTCGGACATCACTGTTCAGCAGCTCCTACAGTAACCTCAGACTTAGTAACTCACACAAATTTTATATTGTTTTGTAGCACTTTTTAAATGCTACAATTTGCAATTTATTTCATTGAAAAATGTAGAGCTAGAAGCAAGTTACCAGCCTTTGAGCAAACTGCGTATCAAAGCTTTTCTGACATAGCTGTTCAGTAGTTTCTACTGTTACCCGAGACTCAGAAAACTTGATTACATCTTATATTTTCTTGTAGCTCTTTTCACATCCTACAACTTAGTTTTTAGTTTAGCTCAAAATATACCGTTTGAGCAGATTTATAAAGCTTGGAACTATTGGAGCCAAATAA</canonical_amplicon>
		<polymorphic_amplicon>TTTACATACCAAGTCCGTCAAATTTTATATTCTTTTGTAGCCCTTTTCAAATCCTACAATTTGAACTTTGTGTCAGTCAAAAATATCATGTTTGAGGTGATTTACAAGGTTTTAAAGAACCTGTATCCCATAGTTCTTCGGACATCACTGTTCAGCAGCTCCTACAGTAACCTCAGACTTAGTAACTCACACAAATTTTATATTGTTTTGTAGCACTTTTTAAATGCTACAATTTGCAATTTATTTCATTGAAAAATGTAGAGCTAGAAGCAAGTTACCAGCCTTTGAGCAAACTGCGTATCAAAGCTTTTCTGACATAGCTGTTCAGTAGTTTCTACTGTTACCCGAGACTCAGAAAACTTGATTACATCTTATATTTTCTTGTAGCTCTTTTCACATCCTACAAYTTAGTTTTTAGTTTAGCTCAAAATATACCGTTTGAGCAGATTTATAAAGCTTGGAACTATTGGAGCCAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34229</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>646000</contig_pos>
        <strand></strand>
        <context>agtttagctc[A/G]aaatataccg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCTTGTAGCTCTTTTCACATCCTACAACTTAGTTTTTAGTTTAGCTC</left_flank>
        <right_flank>AAATATACCGTTTGAGCAGATTTATAAAGCTTGGAACTATTGGAGCCAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATAGAACATACTTCTCCGTTGAGATTATCTAAAAAAATAACATTGTTGTTCAACGTATCCTGAAGGAGTTGTTTACATACCAAGTCCGTCAAATTTTATATTCTTTTGTAGCCCTTTTCAAATCCTACAATTTGAACTTTGTGTCAGTCAAAAATATCATGTTTGAGGTGATTTACAAGGTTTTAAAGAACCTGTATCCCATAGTTCTTCGGACATCACTGTTCAGCAGCTCCTACAGTAACCTCAGACTTAGTAACTCACACAAATTTTATATTGTTTTGTAGCACTTTTTAAATGCTACAATTTGCAATTTATTTCATTGAAAAATGTAGAGCTAGAAGCAAGTTACCAGCCTTTGAGCAAACTGCGTATCAAAGCTTTTCTGACATAGCTGTTCAGTAGTTTCTACTGTTACCCGAGACTCAGAAAACTTGATTACATCTTATATTTTCTTGTAGCTCTTTTCACATCCTACAACTTAGTTTTTAGTTTAGCTCAAAATATACCGTTTGAGCAGATTTATAAAGCTTGGAACTATTGGAGCCAAATAATCTTACTGTAGTCTCCCCACGGAAAGCCTAGACGTATCAAGTTAGTTGAATTTTAATATCATTTTGAAGCGTTTTCAAGCTCTATTTTTTAATTTCAATTTAATGAAAAATGGCCGTTTCCAATTCCGCATTACATTTTATATTTCAAGAACCTAATATTCCTATTTTGATGAATTTTGGGCTATTCAAAGTTTTCCGATTGAGTTGAAACCTGGATATATGCTTCTGGATAGACAGATTTCTATTGATTAGTTGATGCCTTTTTTAATTATGATTCAGAAGTCTTCTGAAGACGTTCCTCAGTTGCACAACTCATTTGTAGAAGCTGCAGGATAAAGAGGCTGGAAGGAGAAGGAAAAGCCGCTAATGTGTATACGTCATTTCTACCACGCTCTCTATGGTCAGCCGTGGTTTAGTGGCTAGTGAGCTACGGTTTTGCCCACATGA</canonical>
            <polymorphic>AAATAGAACATACTTCTCCGTTGAGATTATCTAAAAAAATAACATTGTTGTTCAACGTATCCTGAAGGAGTTGTTTACATACCAAGTCCGTCAAATTTTATATTCTTTTGTAGCCCTTTTCAAATCCTACAATTTGAACTTTGTGTCAGTCAAAAATATCATGTTTGAGGTGATTTACAAGGTTTTAAAGAACCTGTATCCCATAGTTCTTCGGACATCACTGTTCAGCAGCTCCTACAGTAACCTCAGACTTAGTAACTCACACAAATTTTATATTGTTTTGTAGCACTTTTTAAATGCTACAATTTGCAATTTATTTCATTGAAAAATGTAGAGCTAGAAGCAAGTTACCAGCCTTTGAGCAAACTGCGTATCAAAGCTTTTCTGACATAGCTGTTCAGTAGTTTCTACTGTTACCCGAGACTCAGAAAACTTGATTACATCTTATATTTTCTTGTAGCTCTTTTCACATCCTACAACTTAGTTTTTAGTTTAGCTCRAAATATACCGTTTGAGCAGATTTATAAAGCTTGGAACTATTGGAGCCAAATAATCTTACTGTAGTCTCCCCACGGAAAGCCTAGACGTATCAAGTTAGTTGAATTTTAATATCATTTTGAAGCGTTTTCAAGCTCTATTTTTTAATTTCAATTTAATGAAAAATGGCCGTTTCCAATTCCGCATTACATTTTATATTTCAAGAACCTAATATTCCTATTTTGATGAATTTTGGGCTATTCAAAGTTTTCCGATTGAGTTGAAACCTGGATATATGCTTCTGGATAGACAGATTTCTATTGATTAGTTGATGCCTTTTTTAATTATGATTCAGAAGTCTTCTGAAGACGTTCCTCAGTTGCACAACTCATTTGTAGAAGCTGCAGGATAAAGAGGCTGGAAGGAGAAGGAAAAGCCGCTAATGTGTATACGTCATTTCTACCACGCTCTCTATGGTCAGCCGTGGTTTAGTGGCTAGTGAGCTACGGTTTTGCCCACATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTACATACCAAGTCCGTCAA</pcr_primer_p1>
		<pcr_primer_p2>TTATTTGGCTCCAATAGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>480</pcr_amplicon_size>
		<canonical_amplicon>TTTACATACCAAGTCCGTCAAATTTTATATTCTTTTGTAGCCCTTTTCAAATCCTACAATTTGAACTTTGTGTCAGTCAAAAATATCATGTTTGAGGTGATTTACAAGGTTTTAAAGAACCTGTATCCCATAGTTCTTCGGACATCACTGTTCAGCAGCTCCTACAGTAACCTCAGACTTAGTAACTCACACAAATTTTATATTGTTTTGTAGCACTTTTTAAATGCTACAATTTGCAATTTATTTCATTGAAAAATGTAGAGCTAGAAGCAAGTTACCAGCCTTTGAGCAAACTGCGTATCAAAGCTTTTCTGACATAGCTGTTCAGTAGTTTCTACTGTTACCCGAGACTCAGAAAACTTGATTACATCTTATATTTTCTTGTAGCTCTTTTCACATCCTACAACTTAGTTTTTAGTTTAGCTCAAAATATACCGTTTGAGCAGATTTATAAAGCTTGGAACTATTGGAGCCAAATAA</canonical_amplicon>
		<polymorphic_amplicon>TTTACATACCAAGTCCGTCAAATTTTATATTCTTTTGTAGCCCTTTTCAAATCCTACAATTTGAACTTTGTGTCAGTCAAAAATATCATGTTTGAGGTGATTTACAAGGTTTTAAAGAACCTGTATCCCATAGTTCTTCGGACATCACTGTTCAGCAGCTCCTACAGTAACCTCAGACTTAGTAACTCACACAAATTTTATATTGTTTTGTAGCACTTTTTAAATGCTACAATTTGCAATTTATTTCATTGAAAAATGTAGAGCTAGAAGCAAGTTACCAGCCTTTGAGCAAACTGCGTATCAAAGCTTTTCTGACATAGCTGTTCAGTAGTTTCTACTGTTACCCGAGACTCAGAAAACTTGATTACATCTTATATTTTCTTGTAGCTCTTTTCACATCCTACAACTTAGTTTTTAGTTTAGCTCRAAATATACCGTTTGAGCAGATTTATAAAGCTTGGAACTATTGGAGCCAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34230</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>646066</contig_pos>
        <strand>+</strand>
        <context>TTACTGTAGT[C/T]TCCCCACGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCAGATTTATAAAGCTTGGAACTATTGGAGCCAAATAATCTTACTGTAGT</left_flank>
        <right_flank>TCCCCACGGAAAGCCTAGACGTATCAAGTTAGTTGAATTTTAATATCATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGTTGTTTACATACCAAGTCCGTCAAATTTTATATTCTTTTGTAGCCCTTTTCAAATCCTACAATTTGAACTTTGTGTCAGTCAAAAATATCATGTTTGAGGTGATTTACAAGGTTTTAAAGAACCTGTATCCCATAGTTCTTCGGACATCACTGTTCAGCAGCTCCTACAGTAACCTCAGACTTAGTAACTCACACAAATTTTATATTGTTTTGTAGCACTTTTTAAATGCTACAATTTGCAATTTATTTCATTGAAAAATGTAGAGCTAGAAGCAAGTTACCAGCCTTTGAGCAAACTGCGTATCAAAGCTTTTCTGACATAGCTGTTCAGTAGTTTCTACTGTTACCCGAGACTCAGAAAACTTGATTACATCTTATATTTTCTTGTAGCTCTTTTCACATCCTACAACTTAGTTTTTAGTTTAGCTCAAAATATACCGTTTGAGCAGATTTATAAAGCTTGGAACTATTGGAGCCAAATAATCTTACTGTAGTCTCCCCACGGAAAGCCTAGACGTATCAAGTTAGTTGAATTTTAATATCATTTTGAAGCGTTTTCAAGCTCTATTTTTTAATTTCAATTTAATGAAAAATGGCCGTTTCCAATTCCGCATTACATTTTATATTTCAAGAACCTAATATTCCTATTTTGATGAATTTTGGGCTATTCAAAGTTTTCCGATTGAGTTGAAACCTGGATATATGCTTCTGGATAGACAGATTTCTATTGATTAGTTGATGCCTTTTTTAATTATGATTCAGAAGTCTTCTGAAGACGTTCCTCAGTTGCACAACTCATTTGTAGAAGCTGCAGGATAAAGAGGCTGGAAGGAGAAGGAAAAGCCGCTAATGTGTATACGTCATTTCTACCACGCTCTCTATGGTCAGCCGTGGTTTAGTGGCTAGTGAGCTACGGTTTTGCCCACATGATGCGGGTTTGAGTCTAGCTAGCTCCAAATTCTTCTGTTTTCTTTTTACAGAGTTCATAACAGAATA</canonical>
            <polymorphic>GGAGTTGTTTACATACCAAGTCCGTCAAATTTTATATTCTTTTGTAGCCCTTTTCAAATCCTACAATTTGAACTTTGTGTCAGTCAAAAATATCATGTTTGAGGTGATTTACAAGGTTTTAAAGAACCTGTATCCCATAGTTCTTCGGACATCACTGTTCAGCAGCTCCTACAGTAACCTCAGACTTAGTAACTCACACAAATTTTATATTGTTTTGTAGCACTTTTTAAATGCTACAATTTGCAATTTATTTCATTGAAAAATGTAGAGCTAGAAGCAAGTTACCAGCCTTTGAGCAAACTGCGTATCAAAGCTTTTCTGACATAGCTGTTCAGTAGTTTCTACTGTTACCCGAGACTCAGAAAACTTGATTACATCTTATATTTTCTTGTAGCTCTTTTCACATCCTACAACTTAGTTTTTAGTTTAGCTCAAAATATACCGTTTGAGCAGATTTATAAAGCTTGGAACTATTGGAGCCAAATAATCTTACTGTAGTYTCCCCACGGAAAGCCTAGACGTATCAAGTTAGTTGAATTTTAATATCATTTTGAAGCGTTTTCAAGCTCTATTTTTTAATTTCAATTTAATGAAAAATGGCCGTTTCCAATTCCGCATTACATTTTATATTTCAAGAACCTAATATTCCTATTTTGATGAATTTTGGGCTATTCAAAGTTTTCCGATTGAGTTGAAACCTGGATATATGCTTCTGGATAGACAGATTTCTATTGATTAGTTGATGCCTTTTTTAATTATGATTCAGAAGTCTTCTGAAGACGTTCCTCAGTTGCACAACTCATTTGTAGAAGCTGCAGGATAAAGAGGCTGGAAGGAGAAGGAAAAGCCGCTAATGTGTATACGTCATTTCTACCACGCTCTCTATGGTCAGCCGTGGTTTAGTGGCTAGTGAGCTACGGTTTTGCCCACATGATGCGGGTTTGAGTCTAGCTAGCTCCAAATTCTTCTGTTTTCTTTTTACAGAGTTCATAACAGAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGGAGTTGTTTACATACCAAGT</pcr_primer_p1>
		<pcr_primer_p2>ATATAAAATGTAATGCGGAATTG</pcr_primer_p2>
		<pcr_amplicon_size>633</pcr_amplicon_size>
		<canonical_amplicon>TCTCCCCACGGAAAGCCTAGACGTATCAAGTTAGTTGAATTTTAATATCATTTTGAAGCGTTTTCAAGCTCTATTTTTTAATTTCAATTTAATGAAAAATGGCCGTTTCCAATTCCGCATTACATTTTATAT</canonical_amplicon>
		<polymorphic_amplicon>TYTCCCCACGGAAAGCCTAGACGTATCAAGTTAGTTGAATTTTAATATCATTTTGAAGCGTTTTCAAGCTCTATTTTTTAATTTCAATTTAATGAAAAATGGCCGTTTCCAATTCCGCATTACATTTTATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34231</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>646079</contig_pos>
        <strand>+</strand>
        <context>CCCACGGAAA[C/G]CCTAGACGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCTTGGAACTATTGGAGCCAAATAATCTTACTGTAGTCTCCCCACGGAAA</left_flank>
        <right_flank>CCTAGACGTATCAAGTTAGTTGAATTTTAATATCATTTTGAAGCGTTTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACCAAGTCCGTCAAATTTTATATTCTTTTGTAGCCCTTTTCAAATCCTACAATTTGAACTTTGTGTCAGTCAAAAATATCATGTTTGAGGTGATTTACAAGGTTTTAAAGAACCTGTATCCCATAGTTCTTCGGACATCACTGTTCAGCAGCTCCTACAGTAACCTCAGACTTAGTAACTCACACAAATTTTATATTGTTTTGTAGCACTTTTTAAATGCTACAATTTGCAATTTATTTCATTGAAAAATGTAGAGCTAGAAGCAAGTTACCAGCCTTTGAGCAAACTGCGTATCAAAGCTTTTCTGACATAGCTGTTCAGTAGTTTCTACTGTTACCCGAGACTCAGAAAACTTGATTACATCTTATATTTTCTTGTAGCTCTTTTCACATCCTACAACTTAGTTTTTAGTTTAGCTCAAAATATACCGTTTGAGCAGATTTATAAAGCTTGGAACTATTGGAGCCAAATAATCTTACTGTAGTCTCCCCACGGAAAGCCTAGACGTATCAAGTTAGTTGAATTTTAATATCATTTTGAAGCGTTTTCAAGCTCTATTTTTTAATTTCAATTTAATGAAAAATGGCCGTTTCCAATTCCGCATTACATTTTATATTTCAAGAACCTAATATTCCTATTTTGATGAATTTTGGGCTATTCAAAGTTTTCCGATTGAGTTGAAACCTGGATATATGCTTCTGGATAGACAGATTTCTATTGATTAGTTGATGCCTTTTTTAATTATGATTCAGAAGTCTTCTGAAGACGTTCCTCAGTTGCACAACTCATTTGTAGAAGCTGCAGGATAAAGAGGCTGGAAGGAGAAGGAAAAGCCGCTAATGTGTATACGTCATTTCTACCACGCTCTCTATGGTCAGCCGTGGTTTAGTGGCTAGTGAGCTACGGTTTTGCCCACATGATGCGGGTTTGAGTCTAGCTAGCTCCAAATTCTTCTGTTTTCTTTTTACAGAGTTCATAACAGAATACCGTAGCCCTACA</canonical>
            <polymorphic>TACCAAGTCCGTCAAATTTTATATTCTTTTGTAGCCCTTTTCAAATCCTACAATTTGAACTTTGTGTCAGTCAAAAATATCATGTTTGAGGTGATTTACAAGGTTTTAAAGAACCTGTATCCCATAGTTCTTCGGACATCACTGTTCAGCAGCTCCTACAGTAACCTCAGACTTAGTAACTCACACAAATTTTATATTGTTTTGTAGCACTTTTTAAATGCTACAATTTGCAATTTATTTCATTGAAAAATGTAGAGCTAGAAGCAAGTTACCAGCCTTTGAGCAAACTGCGTATCAAAGCTTTTCTGACATAGCTGTTCAGTAGTTTCTACTGTTACCCGAGACTCAGAAAACTTGATTACATCTTATATTTTCTTGTAGCTCTTTTCACATCCTACAACTTAGTTTTTAGTTTAGCTCAAAATATACCGTTTGAGCAGATTTATAAAGCTTGGAACTATTGGAGCCAAATAATCTTACTGTAGTCTCCCCACGGAAASCCTAGACGTATCAAGTTAGTTGAATTTTAATATCATTTTGAAGCGTTTTCAAGCTCTATTTTTTAATTTCAATTTAATGAAAAATGGCCGTTTCCAATTCCGCATTACATTTTATATTTCAAGAACCTAATATTCCTATTTTGATGAATTTTGGGCTATTCAAAGTTTTCCGATTGAGTTGAAACCTGGATATATGCTTCTGGATAGACAGATTTCTATTGATTAGTTGATGCCTTTTTTAATTATGATTCAGAAGTCTTCTGAAGACGTTCCTCAGTTGCACAACTCATTTGTAGAAGCTGCAGGATAAAGAGGCTGGAAGGAGAAGGAAAAGCCGCTAATGTGTATACGTCATTTCTACCACGCTCTCTATGGTCAGCCGTGGTTTAGTGGCTAGTGAGCTACGGTTTTGCCCACATGATGCGGGTTTGAGTCTAGCTAGCTCCAAATTCTTCTGTTTTCTTTTTACAGAGTTCATAACAGAATACCGTAGCCCTACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>144 118 105 68 67 53 51 45 37 36 34 34 34 33 25 19 18 16 16 14 14 8 7 4</canonical_bands>
                <polymorphic_bands>144 118 105 87 68 67 51 45 37 36 34 34 33 25 19 18 16 16 14 14 8 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGGAGTTGTTTACATACCAAGT</pcr_primer_p1>
		<pcr_primer_p2>ATATAAAATGTAATGCGGAATTG</pcr_primer_p2>
		<pcr_amplicon_size>633</pcr_amplicon_size>
		<canonical_amplicon>AGCCTAGACGTATCAAGTTAGTTGAATTTTAATATCATTTTGAAGCGTTTTCAAGCTCTATTTTTTAATTTCAATTTAATGAAAAATGGCCGTTTCCAATTCCGCATTACATTTTATAT</canonical_amplicon>
		<polymorphic_amplicon>ASCCTAGACGTATCAAGTTAGTTGAATTTTAATATCATTTTGAAGCGTTTTCAAGCTCTATTTTTTAATTTCAATTTAATGAAAAATGGCCGTTTCCAATTCCGCATTACATTTTATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34232</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>646090</contig_pos>
        <strand>+</strand>
        <context>CCTAGACGTA[C/T]CAAGTTAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGAGCCAAATAATCTTACTGTAGTCTCCCCACGGAAAGCCTAGACGTA</left_flank>
        <right_flank>CAAGTTAGTTGAATTTTAATATCATTTTGAAGCGTTTTCAAGCTCTATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAATTTTATATTCTTTTGTAGCCCTTTTCAAATCCTACAATTTGAACTTTGTGTCAGTCAAAAATATCATGTTTGAGGTGATTTACAAGGTTTTAAAGAACCTGTATCCCATAGTTCTTCGGACATCACTGTTCAGCAGCTCCTACAGTAACCTCAGACTTAGTAACTCACACAAATTTTATATTGTTTTGTAGCACTTTTTAAATGCTACAATTTGCAATTTATTTCATTGAAAAATGTAGAGCTAGAAGCAAGTTACCAGCCTTTGAGCAAACTGCGTATCAAAGCTTTTCTGACATAGCTGTTCAGTAGTTTCTACTGTTACCCGAGACTCAGAAAACTTGATTACATCTTATATTTTCTTGTAGCTCTTTTCACATCCTACAACTTAGTTTTTAGTTTAGCTCAAAATATACCGTTTGAGCAGATTTATAAAGCTTGGAACTATTGGAGCCAAATAATCTTACTGTAGTCTCCCCACGGAAAGCCTAGACGTATCAAGTTAGTTGAATTTTAATATCATTTTGAAGCGTTTTCAAGCTCTATTTTTTAATTTCAATTTAATGAAAAATGGCCGTTTCCAATTCCGCATTACATTTTATATTTCAAGAACCTAATATTCCTATTTTGATGAATTTTGGGCTATTCAAAGTTTTCCGATTGAGTTGAAACCTGGATATATGCTTCTGGATAGACAGATTTCTATTGATTAGTTGATGCCTTTTTTAATTATGATTCAGAAGTCTTCTGAAGACGTTCCTCAGTTGCACAACTCATTTGTAGAAGCTGCAGGATAAAGAGGCTGGAAGGAGAAGGAAAAGCCGCTAATGTGTATACGTCATTTCTACCACGCTCTCTATGGTCAGCCGTGGTTTAGTGGCTAGTGAGCTACGGTTTTGCCCACATGATGCGGGTTTGAGTCTAGCTAGCTCCAAATTCTTCTGTTTTCTTTTTACAGAGTTCATAACAGAATACCGTAGCCCTACAGTAACCCACCG</canonical>
            <polymorphic>TCAAATTTTATATTCTTTTGTAGCCCTTTTCAAATCCTACAATTTGAACTTTGTGTCAGTCAAAAATATCATGTTTGAGGTGATTTACAAGGTTTTAAAGAACCTGTATCCCATAGTTCTTCGGACATCACTGTTCAGCAGCTCCTACAGTAACCTCAGACTTAGTAACTCACACAAATTTTATATTGTTTTGTAGCACTTTTTAAATGCTACAATTTGCAATTTATTTCATTGAAAAATGTAGAGCTAGAAGCAAGTTACCAGCCTTTGAGCAAACTGCGTATCAAAGCTTTTCTGACATAGCTGTTCAGTAGTTTCTACTGTTACCCGAGACTCAGAAAACTTGATTACATCTTATATTTTCTTGTAGCTCTTTTCACATCCTACAACTTAGTTTTTAGTTTAGCTCAAAATATACCGTTTGAGCAGATTTATAAAGCTTGGAACTATTGGAGCCAAATAATCTTACTGTAGTCTCCCCACGGAAAGCCTAGACGTAYCAAGTTAGTTGAATTTTAATATCATTTTGAAGCGTTTTCAAGCTCTATTTTTTAATTTCAATTTAATGAAAAATGGCCGTTTCCAATTCCGCATTACATTTTATATTTCAAGAACCTAATATTCCTATTTTGATGAATTTTGGGCTATTCAAAGTTTTCCGATTGAGTTGAAACCTGGATATATGCTTCTGGATAGACAGATTTCTATTGATTAGTTGATGCCTTTTTTAATTATGATTCAGAAGTCTTCTGAAGACGTTCCTCAGTTGCACAACTCATTTGTAGAAGCTGCAGGATAAAGAGGCTGGAAGGAGAAGGAAAAGCCGCTAATGTGTATACGTCATTTCTACCACGCTCTCTATGGTCAGCCGTGGTTTAGTGGCTAGTGAGCTACGGTTTTGCCCACATGATGCGGGTTTGAGTCTAGCTAGCTCCAAATTCTTCTGTTTTCTTTTTACAGAGTTCATAACAGAATACCGTAGCCCTACAGTAACCCACCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTATTGGAGCCAAATAATCTT</pcr_primer_p1>
		<pcr_primer_p2>CCAAAATTCATCAAAATAGGA</pcr_primer_p2>
		<pcr_amplicon_size>199</pcr_amplicon_size>
		<canonical_amplicon>AACTATTGGAGCCAAATAATCTTACTGTAGTCTCCCCACGGAAAGCCTAGACGTATCAAGTTAGTTGAATTTTAATATCATTTTGAAGCGTTTTCAAGCTCTATTTTTTAATTTCAATTTAATGAAAAATGGCCGTTTCCAATTCCGCATTACATTTTATATTTCAAGAACCTAATATTCCTATTTTGATGAATTTTGG</canonical_amplicon>
		<polymorphic_amplicon>AACTATTGGAGCCAAATAATCTTACTGTAGTCTCCCCACGGAAAGCCTAGACGTAYCAAGTTAGTTGAATTTTAATATCATTTTGAAGCGTTTTCAAGCTCTATTTTTTAATTTCAATTTAATGAAAAATGGCCGTTTCCAATTCCGCATTACATTTTATATTTCAAGAACCTAATATTCCTATTTTGATGAATTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34233</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>646128</contig_pos>
        <strand>+</strand>
        <context>TGAAGCGTTT[C/T]CAAGCTCTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCCTAGACGTATCAAGTTAGTTGAATTTTAATATCATTTTGAAGCGTTT</left_flank>
        <right_flank>CAAGCTCTATTTTTTAATTTCAATTTAATGAAAAATGGCCGTTTCCAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAATTTGAACTTTGTGTCAGTCAAAAATATCATGTTTGAGGTGATTTACAAGGTTTTAAAGAACCTGTATCCCATAGTTCTTCGGACATCACTGTTCAGCAGCTCCTACAGTAACCTCAGACTTAGTAACTCACACAAATTTTATATTGTTTTGTAGCACTTTTTAAATGCTACAATTTGCAATTTATTTCATTGAAAAATGTAGAGCTAGAAGCAAGTTACCAGCCTTTGAGCAAACTGCGTATCAAAGCTTTTCTGACATAGCTGTTCAGTAGTTTCTACTGTTACCCGAGACTCAGAAAACTTGATTACATCTTATATTTTCTTGTAGCTCTTTTCACATCCTACAACTTAGTTTTTAGTTTAGCTCAAAATATACCGTTTGAGCAGATTTATAAAGCTTGGAACTATTGGAGCCAAATAATCTTACTGTAGTCTCCCCACGGAAAGCCTAGACGTATCAAGTTAGTTGAATTTTAATATCATTTTGAAGCGTTTTCAAGCTCTATTTTTTAATTTCAATTTAATGAAAAATGGCCGTTTCCAATTCCGCATTACATTTTATATTTCAAGAACCTAATATTCCTATTTTGATGAATTTTGGGCTATTCAAAGTTTTCCGATTGAGTTGAAACCTGGATATATGCTTCTGGATAGACAGATTTCTATTGATTAGTTGATGCCTTTTTTAATTATGATTCAGAAGTCTTCTGAAGACGTTCCTCAGTTGCACAACTCATTTGTAGAAGCTGCAGGATAAAGAGGCTGGAAGGAGAAGGAAAAGCCGCTAATGTGTATACGTCATTTCTACCACGCTCTCTATGGTCAGCCGTGGTTTAGTGGCTAGTGAGCTACGGTTTTGCCCACATGATGCGGGTTTGAGTCTAGCTAGCTCCAAATTCTTCTGTTTTCTTTTTACAGAGTTCATAACAGAATACCGTAGCCCTACAGTAACCCACCGGTTGTATAAACGCATGAATCGCGGCAAAAACCAAGCTG</canonical>
            <polymorphic>ACAATTTGAACTTTGTGTCAGTCAAAAATATCATGTTTGAGGTGATTTACAAGGTTTTAAAGAACCTGTATCCCATAGTTCTTCGGACATCACTGTTCAGCAGCTCCTACAGTAACCTCAGACTTAGTAACTCACACAAATTTTATATTGTTTTGTAGCACTTTTTAAATGCTACAATTTGCAATTTATTTCATTGAAAAATGTAGAGCTAGAAGCAAGTTACCAGCCTTTGAGCAAACTGCGTATCAAAGCTTTTCTGACATAGCTGTTCAGTAGTTTCTACTGTTACCCGAGACTCAGAAAACTTGATTACATCTTATATTTTCTTGTAGCTCTTTTCACATCCTACAACTTAGTTTTTAGTTTAGCTCAAAATATACCGTTTGAGCAGATTTATAAAGCTTGGAACTATTGGAGCCAAATAATCTTACTGTAGTCTCCCCACGGAAAGCCTAGACGTATCAAGTTAGTTGAATTTTAATATCATTTTGAAGCGTTTYCAAGCTCTATTTTTTAATTTCAATTTAATGAAAAATGGCCGTTTCCAATTCCGCATTACATTTTATATTTCAAGAACCTAATATTCCTATTTTGATGAATTTTGGGCTATTCAAAGTTTTCCGATTGAGTTGAAACCTGGATATATGCTTCTGGATAGACAGATTTCTATTGATTAGTTGATGCCTTTTTTAATTATGATTCAGAAGTCTTCTGAAGACGTTCCTCAGTTGCACAACTCATTTGTAGAAGCTGCAGGATAAAGAGGCTGGAAGGAGAAGGAAAAGCCGCTAATGTGTATACGTCATTTCTACCACGCTCTCTATGGTCAGCCGTGGTTTAGTGGCTAGTGAGCTACGGTTTTGCCCACATGATGCGGGTTTGAGTCTAGCTAGCTCCAAATTCTTCTGTTTTCTTTTTACAGAGTTCATAACAGAATACCGTAGCCCTACAGTAACCCACCGGTTGTATAAACGCATGAATCGCGGCAAAAACCAAGCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTATTGGAGCCAAATAATCTT</pcr_primer_p1>
		<pcr_primer_p2>CCAAAATTCATCAAAATAGGA</pcr_primer_p2>
		<pcr_amplicon_size>199</pcr_amplicon_size>
		<canonical_amplicon>AACTATTGGAGCCAAATAATCTTACTGTAGTCTCCCCACGGAAAGCCTAGACGTATCAAGTTAGTTGAATTTTAATATCATTTTGAAGCGTTTTCAAGCTCTATTTTTTAATTTCAATTTAATGAAAAATGGCCGTTTCCAATTCCGCATTACATTTTATATTTCAAGAACCTAATATTCCTATTTTGATGAATTTTGG</canonical_amplicon>
		<polymorphic_amplicon>AACTATTGGAGCCAAATAATCTTACTGTAGTCTCCCCACGGAAAGCCTAGACGTATCAAGTTAGTTGAATTTTAATATCATTTTGAAGCGTTTYCAAGCTCTATTTTTTAATTTCAATTTAATGAAAAATGGCCGTTTCCAATTCCGCATTACATTTTATATTTCAAGAACCTAATATTCCTATTTTGATGAATTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34234</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>647733</contig_pos>
        <strand>+</strand>
        <context>GTCGAGATGT[C/T]GGACGTCTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTCTTCCTCTTCCTCATCGTTGTCATCAGACTTGCCACGTCGAGATGT</left_flank>
        <right_flank>GGACGTCTTCTTTTCTGAAAAAGTTTTGAATCTCAGAAGACGTCAAAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAACTCTTCCAGCTAAAACACTTATGCCAAATTCCCATTCATTTAGTTAGATACAAAATTTCAAAATTTATATACAGTTGGGGTGGCTGGAAAAGGCTTAAAATTATGTACAATCAAAGTGCGAATAGAAATTGGGGTGTAGGGGGTAATTAGTGTCTAATTAATGAGCAATTATCCAAAGTGCAATTAGAGAGAAGCAAAAAGTTCCCGTTGCGCGGTGAAGGCTGATGGAACCATTGTCCTCACCGTCATCTCTGAAAATTTTTTTTCAATTAGTGGGTAATTAGGGGTAATTAGGAGGTAATCAGTGATCAAAAATTCCAAAAAAAAAAGTTTAGATAATTAGTTAGGGTAATGAAAACCAATAATTACCCATTATCGTCGTCGTCTTCATCTGAATCCTTCTTTTTCCGGTTTTCCTTTTTCATCGTCTTCTTTTTTGGCTTTTCTTCTTCCTCTTCCTCATCGTTGTCATCAGACTTGCCACGTCGAGATGTCGGACGTCTTCTTTTCTGAAAAAGTTTTGAATCTCAGAAGACGTCAAAATCACAAGAATCTTTGAAGACGTGCACTATTTCATATTCAGGGTTTCAAAAAACGTCAACTTTTCGAATTCAATTTTGAGTTTCAGAAAAAGGGACGTCTTCTAAACTTCAGAAAACTTCAAATTTTCAGACTCTGGGTTACAGAAAACGGTCTTCTGACTTTTGGAAATGTCACAGTTCTCAATTTCTGAATTTCAGAAGGTCCTTTTCTAAATACAGAATCTTAGAAAACGTGAAAAATTCTGAATTCCAGAAGGCGCCACAGCTTTAAATTCAGAATTTCGACGTCTTCTAAAATTCAGAAACCAAACTCACCGGAACGTCTCCTTCTTCCATCGGATCAAACTCCTCCTCCTCCTCTTCTTCATCCTTCTCATATCTCGACGGACGACCTCTTCTAGATGTTGGCTTCTTCTTCTTACGTGGCGATTCAGAATCCTCCACGTCTTCAGA</canonical>
            <polymorphic>CAAAACTCTTCCAGCTAAAACACTTATGCCAAATTCCCATTCATTTAGTTAGATACAAAATTTCAAAATTTATATACAGTTGGGGTGGCTGGAAAAGGCTTAAAATTATGTACAATCAAAGTGCGAATAGAAATTGGGGTGTAGGGGGTAATTAGTGTCTAATTAATGAGCAATTATCCAAAGTGCAATTAGAGAGAAGCAAAAAGTTCCCGTTGCGCGGTGAAGGCTGATGGAACCATTGTCCTCACCGTCATCTCTGAAAATTTTTTTTCAATTAGTGGGTAATTAGGGGTAATTAGGAGGTAATCAGTGATCAAAAATTCCAAAAAAAAAAGTTTAGATAATTAGTTAGGGTAATGAAAACCAATAATTACCCATTATCGTCGTCGTCTTCATCTGAATCCTTCTTTTTCCGGTTTTCCTTTTTCATCGTCTTCTTTTTTGGCTTTTCTTCTTCCTCTTCCTCATCGTTGTCATCAGACTTGCCACGTCGAGATGTYGGACGTCTTCTTTTCTGAAAAAGTTTTGAATCTCAGAAGACGTCAAAATCACAAGAATCTTTGAAGACGTGCACTATTTCATATTCAGGGTTTCAAAAAACGTCAACTTTTCGAATTCAATTTTGAGTTTCAGAAAAAGGGACGTCTTCTAAACTTCAGAAAACTTCAAATTTTCAGACTCTGGGTTACAGAAAACGGTCTTCTGACTTTTGGAAATGTCACAGTTCTCAATTTCTGAATTTCAGAAGGTCCTTTTCTAAATACAGAATCTTAGAAAACGTGAAAAATTCTGAATTCCAGAAGGCGCCACAGCTTTAAATTCAGAATTTCGACGTCTTCTAAAATTCAGAAACCAAACTCACCGGAACGTCTCCTTCTTCCATCGGATCAAACTCCTCCTCCTCCTCTTCTTCATCCTTCTCATATCTCGACGGACGACCTCTTCTAGATGTTGGCTTCTTCTTCTTACGTGGCGATTCAGAATCCTCCACGTCTTCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>258 140 97 95 81 47 37 32 32 28 26 25 22 19 18 18 15 8 2</canonical_bands>
                <polymorphic_bands>258 140 97 95 81 47 37 37 32 32 28 26 25 19 18 18 8 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTAGGGTAATGAAAACCAATAA</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAACCCTGAATATGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTAGGGTAATGAAAACCAATAATTACCCATTATCGTCGTCGTCTTCATCTGAATCCTTCTTTTTCCGGTTTTCCTTTTTCATCGTCTTCTTTTTTGGCTTTTCTTCTTCCTCTTCCTCATCGTTGTCATCAGACTTGCCACGTCGAGATGTCGGACGTCTTCTTTTCTGAAAAAGTTTTGAATCTCAGAAGACGTCAAAATCACAAGAATCTTTGAAGACGTGCACTATTTCATATTCAGGGTTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>GTTAGGGTAATGAAAACCAATAATTACCCATTATCGTCGTCGTCTTCATCTGAATCCTTCTTTTTCCGGTTTTCCTTTTTCATCGTCTTCTTTTTTGGCTTTTCTTCTTCCTCTTCCTCATCGTTGTCATCAGACTTGCCACGTCGAGATGTYGGACGTCTTCTTTTCTGAAAAAGTTTTGAATCTCAGAAGACGTCAAAATCACAAGAATCTTTGAAGACGTGCACTATTTCATATTCAGGGTTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34235</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>648152</contig_pos>
        <strand></strand>
        <context>tcttcatcct[T/C]ctcATATCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTCTCCTTCTTCCATCGGATCAAACTCCTCCTCCTCCTCTTCTTCATCCT</left_flank>
        <right_flank>CTCATATCTCGACGGACGACCTCTTCTAGATGTTGGCTTCTTCTTCTTAC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTTTTTCATCGTCTTCTTTTTTGGCTTTTCTTCTTCCTCTTCCTCATCGTTGTCATCAGACTTGCCACGTCGAGATGTCGGACGTCTTCTTTTCTGAAAAAGTTTTGAATCTCAGAAGACGTCAAAATCACAAGAATCTTTGAAGACGTGCACTATTTCATATTCAGGGTTTCAAAAAACGTCAACTTTTCGAATTCAATTTTGAGTTTCAGAAAAAGGGACGTCTTCTAAACTTCAGAAAACTTCAAATTTTCAGACTCTGGGTTACAGAAAACGGTCTTCTGACTTTTGGAAATGTCACAGTTCTCAATTTCTGAATTTCAGAAGGTCCTTTTCTAAATACAGAATCTTAGAAAACGTGAAAAATTCTGAATTCCAGAAGGCGCCACAGCTTTAAATTCAGAATTTCGACGTCTTCTAAAATTCAGAAACCAAACTCACCGGAACGTCTCCTTCTTCCATCGGATCAAACTCCTCCTCCTCCTCTTCTTCATCCTTCTCATATCTCGACGGACGACCTCTTCTAGATGTTGGCTTCTTCTTCTTACGTGGCGATTCAGAATCCTCCACGTCTTCAGAATTCTCTTCCTCTTCTTCCTCCTTCTTCGGACGTCTTCTGACCTCCTTCTTCTTCTTATTCTCCTCCTCACGTCTTCTAGTACTGTACTTCTTATCCATCATACCCTCCAAATCATCCGAATCCTCCACGTCATCATTCTCCTCTTCTAGAAGCGCTTCTAGATCATCGTCATCGTCTCCAGAAATCCGTCTCATTTTTCCCAGTAGATCCGACGTCTTCTTTTTCTCATCTGGAGACAAAAAGTCTTCAGAATCTCTAAAACGAGAGGCGATGGGGTGTGAGAAGATGTCGTCCGATGATTTCTGAAGAGATTCAGAAGATGGAATCACCAAATCGTCAGAATAGATGCCTTCTGAAACTGAGAAGCCGTCAGAATTCTGGAAGCCGTCGGGAAGTTCAGTGGCAAGGAAGGAGCAGA</canonical>
            <polymorphic>TCCTTTTTCATCGTCTTCTTTTTTGGCTTTTCTTCTTCCTCTTCCTCATCGTTGTCATCAGACTTGCCACGTCGAGATGTCGGACGTCTTCTTTTCTGAAAAAGTTTTGAATCTCAGAAGACGTCAAAATCACAAGAATCTTTGAAGACGTGCACTATTTCATATTCAGGGTTTCAAAAAACGTCAACTTTTCGAATTCAATTTTGAGTTTCAGAAAAAGGGACGTCTTCTAAACTTCAGAAAACTTCAAATTTTCAGACTCTGGGTTACAGAAAACGGTCTTCTGACTTTTGGAAATGTCACAGTTCTCAATTTCTGAATTTCAGAAGGTCCTTTTCTAAATACAGAATCTTAGAAAACGTGAAAAATTCTGAATTCCAGAAGGCGCCACAGCTTTAAATTCAGAATTTCGACGTCTTCTAAAATTCAGAAACCAAACTCACCGGAACGTCTCCTTCTTCCATCGGATCAAACTCCTCCTCCTCCTCTTCTTCATCCTYCTCATATCTCGACGGACGACCTCTTCTAGATGTTGGCTTCTTCTTCTTACGTGGCGATTCAGAATCCTCCACGTCTTCAGAATTCTCTTCCTCTTCTTCCTCCTTCTTCGGACGTCTTCTGACCTCCTTCTTCTTCTTATTCTCCTCCTCACGTCTTCTAGTACTGTACTTCTTATCCATCATACCCTCCAAATCATCCGAATCCTCCACGTCATCATTCTCCTCTTCTAGAAGCGCTTCTAGATCATCGTCATCGTCTCCAGAAATCCGTCTCATTTTTCCCAGTAGATCCGACGTCTTCTTTTTCTCATCTGGAGACAAAAAGTCTTCAGAATCTCTAAAACGAGAGGCGATGGGGTGTGAGAAGATGTCGTCCGATGATTTCTGAAGAGATTCAGAAGATGGAATCACCAAATCGTCAGAATAGATGCCTTCTGAAACTGAGAAGCCGTCAGAATTCTGGAAGCCGTCGGGAAGTTCAGTGGCAAGGAAGGAGCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGAATCTTAGAAAACGTGAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTCTGAAGACGTGGAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>ACAGAATCTTAGAAAACGTGAAAAATTCTGAATTCCAGAAGGCGCCACAGCTTTAAATTCAGAATTTCGACGTCTTCTAAAATTCAGAAACCAAACTCACCGGAACGTCTCCTTCTTCCATCGGATCAAACTCCTCCTCCTCCTCTTCTTCATCCTTCTCATATCTCGACGGACGACCTCTTCTAGATGTTGGCTTCTTCTTCTTACGTGGCGATTCAGAATCCTCCACGTCTTCAGAAT</canonical_amplicon>
		<polymorphic_amplicon>ACAGAATCTTAGAAAACGTGAAAAATTCTGAATTCCAGAAGGCGCCACAGCTTTAAATTCAGAATTTCGACGTCTTCTAAAATTCAGAAACCAAACTCACCGGAACGTCTCCTTCTTCCATCGGATCAAACTCCTCCTCCTCCTCTTCTTCATCCTYCTCATATCTCGACGGACGACCTCTTCTAGATGTTGGCTTCTTCTTCTTACGTGGCGATTCAGAATCCTCCACGTCTTCAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34236</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>649467</contig_pos>
        <strand></strand>
        <context>aaagatatca[A/G]aaatttatca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTATCCATGTACTCATGCTGAATTATCTCGGTTCCCATGAAAGATATCA</left_flank>
        <right_flank>AAATTTATCAACTGATAAAATATTTATCATTTTATCAGCTACATTTAACC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATGAACATCCAGATTTCCTTGAGTATCGAAACGGAAAAACACGTGGCAATTTGTGTCGGGTTGGCAGTTGGCGGGTAGTCCGTAGCAGGCATTTGGTTGGGAGCAATCAGTGGAGGCGTCGATTAGAAGGAAGAGAAGAGGAAAGAGGAAAATGAACATTTTCGGCATTTTTACCTGAAAAAAGTTGATTTTACATTTTCAGAAAAATGTTAGATTTTCAGAAAAAAAAACGATTTTTTCCGATAGAATCATCATATGTGCCCTTTGAGCTCAATAATCTCGGTTCCTATAAAAGATATCAAAATTTTGTCCACTGATGAAATGCTCATCATTTTATCAGCTACATTTCATTAATTGGCTTATTTTTGATATCTTCTAAAGGAAGTGAGAAATTTGGTCTCAAAGTTGACTGTTTGGAGGGCGTACTTTGCTTTAAAAGAAGCCTATCCTATCCATGTACTCATGCTGAATTATCTCGGTTCCCATGAAAGATATCAAAAATTTATCAACTGATAAAATATTTATCATTTTATCAGCTACATTTAACCAGATGACAAGTTTCTGTTATCTCTTACAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTCGAAATTGCATTCGGTTGTTGTTTTGTTGATTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTACATGCCCTTTGAGCACAATTAT</canonical>
            <polymorphic>AGATGAACATCCAGATTTCCTTGAGTATCGAAACGGAAAAACACGTGGCAATTTGTGTCGGGTTGGCAGTTGGCGGGTAGTCCGTAGCAGGCATTTGGTTGGGAGCAATCAGTGGAGGCGTCGATTAGAAGGAAGAGAAGAGGAAAGAGGAAAATGAACATTTTCGGCATTTTTACCTGAAAAAAGTTGATTTTACATTTTCAGAAAAATGTTAGATTTTCAGAAAAAAAAACGATTTTTTCCGATAGAATCATCATATGTGCCCTTTGAGCTCAATAATCTCGGTTCCTATAAAAGATATCAAAATTTTGTCCACTGATGAAATGCTCATCATTTTATCAGCTACATTTCATTAATTGGCTTATTTTTGATATCTTCTAAAGGAAGTGAGAAATTTGGTCTCAAAGTTGACTGTTTGGAGGGCGTACTTTGCTTTAAAAGAAGCCTATCCTATCCATGTACTCATGCTGAATTATCTCGGTTCCCATGAAAGATATCARAAATTTATCAACTGATAAAATATTTATCATTTTATCAGCTACATTTAACCAGATGACAAGTTTCTGTTATCTCTTACAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTCGAAATTGCATTCGGTTGTTGTTTTGTTGATTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTACATGCCCTTTGAGCACAATTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAAAAGAAGCCTATCCTATCC</pcr_primer_p1>
		<pcr_primer_p2>AACCCGTACTTGTTACCGTAT</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>TTTAAAAGAAGCCTATCCTATCCATGTACTCATGCTGAATTATCTCGGTTCCCATGAAAGATATCAAAAATTTATCAACTGATAAAATATTTATCATTTTATCAGCTACATTTAACCAGATGACAAGTTTCTGTTATCTCTTACAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTT</canonical_amplicon>
		<polymorphic_amplicon>TTTAAAAGAAGCCTATCCTATCCATGTACTCATGCTGAATTATCTCGGTTCCCATGAAAGATATCARAAATTTATCAACTGATAAAATATTTATCATTTTATCAGCTACATTTAACCAGATGACAAGTTTCTGTTATCTCTTACAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34237</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>649543</contig_pos>
        <strand>+</strand>
        <context>gttatctctt[A/G]cagaaaccga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCATTTTATCAGCTACATTTAACCAGATGACAAGTTTCTGTTATCTCTT</left_flank>
        <right_flank>CAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAGTCCGTAGCAGGCATTTGGTTGGGAGCAATCAGTGGAGGCGTCGATTAGAAGGAAGAGAAGAGGAAAGAGGAAAATGAACATTTTCGGCATTTTTACCTGAAAAAAGTTGATTTTACATTTTCAGAAAAATGTTAGATTTTCAGAAAAAAAAACGATTTTTTCCGATAGAATCATCATATGTGCCCTTTGAGCTCAATAATCTCGGTTCCTATAAAAGATATCAAAATTTTGTCCACTGATGAAATGCTCATCATTTTATCAGCTACATTTCATTAATTGGCTTATTTTTGATATCTTCTAAAGGAAGTGAGAAATTTGGTCTCAAAGTTGACTGTTTGGAGGGCGTACTTTGCTTTAAAAGAAGCCTATCCTATCCATGTACTCATGCTGAATTATCTCGGTTCCCATGAAAGATATCAAAAATTTATCAACTGATAAAATATTTATCATTTTATCAGCTACATTTAACCAGATGACAAGTTTCTGTTATCTCTTACAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTCGAAATTGCATTCGGTTGTTGTTTTGTTGATTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTACATGCCCTTTGAGCACAATTATCTCGATTTCTGTAAGAGATATCAAAAACATGTTGACTGATAAAATGTAGCTGATAGAAAGATGAATATTTCTTTAG</canonical>
            <polymorphic>GTAGTCCGTAGCAGGCATTTGGTTGGGAGCAATCAGTGGAGGCGTCGATTAGAAGGAAGAGAAGAGGAAAGAGGAAAATGAACATTTTCGGCATTTTTACCTGAAAAAAGTTGATTTTACATTTTCAGAAAAATGTTAGATTTTCAGAAAAAAAAACGATTTTTTCCGATAGAATCATCATATGTGCCCTTTGAGCTCAATAATCTCGGTTCCTATAAAAGATATCAAAATTTTGTCCACTGATGAAATGCTCATCATTTTATCAGCTACATTTCATTAATTGGCTTATTTTTGATATCTTCTAAAGGAAGTGAGAAATTTGGTCTCAAAGTTGACTGTTTGGAGGGCGTACTTTGCTTTAAAAGAAGCCTATCCTATCCATGTACTCATGCTGAATTATCTCGGTTCCCATGAAAGATATCAAAAATTTATCAACTGATAAAATATTTATCATTTTATCAGCTACATTTAACCAGATGACAAGTTTCTGTTATCTCTTRCAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTCGAAATTGCATTCGGTTGTTGTTTTGTTGATTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTACATGCCCTTTGAGCACAATTATCTCGATTTCTGTAAGAGATATCAAAAACATGTTGACTGATAAAATGTAGCTGATAGAAAGATGAATATTTCTTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAAAAGAAGCCTATCCTATCC</pcr_primer_p1>
		<pcr_primer_p2>AACCCGTACTTGTTACCGTAT</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>TTTAAAAGAAGCCTATCCTATCCATGTACTCATGCTGAATTATCTCGGTTCCCATGAAAGATATCAAAAATTTATCAACTGATAAAATATTTATCATTTTATCAGCTACATTTAACCAGATGACAAGTTTCTGTTATCTCTTACAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTT</canonical_amplicon>
		<polymorphic_amplicon>TTTAAAAGAAGCCTATCCTATCCATGTACTCATGCTGAATTATCTCGGTTCCCATGAAAGATATCAAAAATTTATCAACTGATAAAATATTTATCATTTTATCAGCTACATTTAACCAGATGACAAGTTTCTGTTATCTCTTRCAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34238</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>649629</contig_pos>
        <strand>+</strand>
        <context>AGTACGGGTT[A/G]AAAAACCAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTT</left_flank>
        <right_flank>AAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGGCATTTTTACCTGAAAAAAGTTGATTTTACATTTTCAGAAAAATGTTAGATTTTCAGAAAAAAAAACGATTTTTTCCGATAGAATCATCATATGTGCCCTTTGAGCTCAATAATCTCGGTTCCTATAAAAGATATCAAAATTTTGTCCACTGATGAAATGCTCATCATTTTATCAGCTACATTTCATTAATTGGCTTATTTTTGATATCTTCTAAAGGAAGTGAGAAATTTGGTCTCAAAGTTGACTGTTTGGAGGGCGTACTTTGCTTTAAAAGAAGCCTATCCTATCCATGTACTCATGCTGAATTATCTCGGTTCCCATGAAAGATATCAAAAATTTATCAACTGATAAAATATTTATCATTTTATCAGCTACATTTAACCAGATGACAAGTTTCTGTTATCTCTTACAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTCGAAATTGCATTCGGTTGTTGTTTTGTTGATTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTACATGCCCTTTGAGCACAATTATCTCGATTTCTGTAAGAGATATCAAAAACATGTTGACTGATAAAATGTAGCTGATAGAAAGATGAATATTTCTTTAGTTGACAAAATTGTGATATCTCTTATGGGAACCGAGGTAATTAAGCTCAAAGGGCATAAAGGATGATCCTATTAGAAAAAATCGTTT</canonical>
            <polymorphic>TTCGGCATTTTTACCTGAAAAAAGTTGATTTTACATTTTCAGAAAAATGTTAGATTTTCAGAAAAAAAAACGATTTTTTCCGATAGAATCATCATATGTGCCCTTTGAGCTCAATAATCTCGGTTCCTATAAAAGATATCAAAATTTTGTCCACTGATGAAATGCTCATCATTTTATCAGCTACATTTCATTAATTGGCTTATTTTTGATATCTTCTAAAGGAAGTGAGAAATTTGGTCTCAAAGTTGACTGTTTGGAGGGCGTACTTTGCTTTAAAAGAAGCCTATCCTATCCATGTACTCATGCTGAATTATCTCGGTTCCCATGAAAGATATCAAAAATTTATCAACTGATAAAATATTTATCATTTTATCAGCTACATTTAACCAGATGACAAGTTTCTGTTATCTCTTACAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTTRAAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTCGAAATTGCATTCGGTTGTTGTTTTGTTGATTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTACATGCCCTTTGAGCACAATTATCTCGATTTCTGTAAGAGATATCAAAAACATGTTGACTGATAAAATGTAGCTGATAGAAAGATGAATATTTCTTTAGTTGACAAAATTGTGATATCTCTTATGGGAACCGAGGTAATTAAGCTCAAAGGGCATAAAGGATGATCCTATTAGAAAAAATCGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCCTATCCTATCCATGTACTC</pcr_primer_p1>
		<pcr_primer_p2>TTCGACTCACTTTTTCTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>AAGCCTATCCTATCCATGTACTCATGCTGAATTATCTCGGTTCCCATGAAAGATATCAAAAATTTATCAACTGATAAAATATTTATCATTTTATCAGCTACATTTAACCAGATGACAAGTTTCTGTTATCTCTTACAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTCGAA</canonical_amplicon>
		<polymorphic_amplicon>AAGCCTATCCTATCCATGTACTCATGCTGAATTATCTCGGTTCCCATGAAAGATATCAAAAATTTATCAACTGATAAAATATTTATCATTTTATCAGCTACATTTAACCAGATGACAAGTTTCTGTTATCTCTTACAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTTRAAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34239</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>649833</contig_pos>
        <strand>+</strand>
        <context>AATTTTMAAT[A/G]TTCCAKATGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAAT</left_flank>
        <right_flank>TTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGATATCTTCTAAAGGAAGTGAGAAATTTGGTCTCAAAGTTGACTGTTTGGAGGGCGTACTTTGCTTTAAAAGAAGCCTATCCTATCCATGTACTCATGCTGAATTATCTCGGTTCCCATGAAAGATATCAAAAATTTATCAACTGATAAAATATTTATCATTTTATCAGCTACATTTAACCAGATGACAAGTTTCTGTTATCTCTTACAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTCGAAATTGCATTCGGTTGTTGTTTTGTTGATTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTACATGCCCTTTGAGCACAATTATCTCGATTTCTGTAAGAGATATCAAAAACATGTTGACTGATAAAATGTAGCTGATAGAAAGATGAATATTTCTTTAGTTGACAAAATTGTGATATCTCTTATGGGAACCGAGGTAATTAAGCTCAAAGGGCATAAAGGATGATCCTATTAGAAAAAATCGTTTTTCCTGAAAATGTAACATTTTTCTCAAAAGGTAAAATTAATTTTTTTAGGTAAAAATGCCGAAAATGTTCATTTTCCTCTTTCCTCTTCTCTTCCTTCTAATCGACGCCTCCACTGATTGCTCCCAACCAAACGCCTGCTACGGACTACCCGCCAACTGCCAACCCGACACAAATTGCCATGTGTTTTTCCGTTTCGATGCTCA</canonical>
            <polymorphic>TTTGATATCTTCTAAAGGAAGTGAGAAATTTGGTCTCAAAGTTGACTGTTTGGAGGGCGTACTTTGCTTTAAAAGAAGCCTATCCTATCCATGTACTCATGCTGAATTATCTCGGTTCCCATGAAAGATATCAAAAATTTATCAACTGATAAAATATTTATCATTTTATCAGCTACATTTAACCAGATGACAAGTTTCTGTTATCTCTTACAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTCGAAATTGCATTCGGTTGTTGTTTTGTTGATTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATRTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTACATGCCCTTTGAGCACAATTATCTCGATTTCTGTAAGAGATATCAAAAACATGTTGACTGATAAAATGTAGCTGATAGAAAGATGAATATTTCTTTAGTTGACAAAATTGTGATATCTCTTATGGGAACCGAGGTAATTAAGCTCAAAGGGCATAAAGGATGATCCTATTAGAAAAAATCGTTTTTCCTGAAAATGTAACATTTTTCTCAAAAGGTAAAATTAATTTTTTTAGGTAAAAATGCCGAAAATGTTCATTTTCCTCTTTCCTCTTCTCTTCCTTCTAATCGACGCCTCCACTGATTGCTCCCAACCAAACGCCTGCTACGGACTACCCGCCAACTGCCAACCCGACACAAATTGCCATGTGTTTTTCCGTTTCGATGCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>504 169 114 109 49 26 22 7</canonical_bands>
                <polymorphic_bands>511 169 114 109 49 26 22</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>134 89 88 88 83 81 78 44 44 38 32 31 30 28 26 23 22 12 9 9 7 4</canonical_bands>
                <polymorphic_bands>134 89 88 88 83 81 78 51 44 38 32 31 30 28 26 23 22 12 9 9 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTGGGAAATTAGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTACAGGGTGGGATAAATGTT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATRTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34240</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>650039</contig_pos>
        <strand></strand>
        <context>tgaatatttc[T/A]ttagttgaca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CAAAAACATGTTGACTGATAAAATGTAGCTGATAGAAAGATGAATATTTC</left_flank>
        <right_flank>TTAGTTGACAAAATTGTGATATCTCTTATGGGAACCGAGGTAATTAAGCT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTACAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTCGAAATTGCATTCGGTTGTTGTTTTGTTGATTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTACATGCCCTTTGAGCACAATTATCTCGATTTCTGTAAGAGATATCAAAAACATGTTGACTGATAAAATGTAGCTGATAGAAAGATGAATATTTCTTTAGTTGACAAAATTGTGATATCTCTTATGGGAACCGAGGTAATTAAGCTCAAAGGGCATAAAGGATGATCCTATTAGAAAAAATCGTTTTTCCTGAAAATGTAACATTTTTCTCAAAAGGTAAAATTAATTTTTTTAGGTAAAAATGCCGAAAATGTTCATTTTCCTCTTTCCTCTTCTCTTCCTTCTAATCGACGCCTCCACTGATTGCTCCCAACCAAACGCCTGCTACGGACTACCCGCCAACTGCCAACCCGACACAAATTGCCATGTGTTTTTCCGTTTCGATGCTCAAGGAAATCTGGATGTTCATCTGAATGACGTCATCGATCCGATGGATTATGTAGCCATGACTGTGAAAGATTTGCCGTCTCCGCTTCTGTCAGAATATCTCATCTGTATTCCTCATCAACGGCAACGTATTCGAGGATACGCCTACAGAGGAGACCCGATTCACATTACAGAGGTAAGATTAGGCGGGAAGTTTGAACTTTTGCAGT</canonical>
            <polymorphic>CTTACAGAAACCGAGATAATTGAGCTCAAAGTACGTATAGATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTCGAAATTGCATTCGGTTGTTGTTTTGTTGATTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTACATGCCCTTTGAGCACAATTATCTCGATTTCTGTAAGAGATATCAAAAACATGTTGACTGATAAAATGTAGCTGATAGAAAGATGAATATTTCWTTAGTTGACAAAATTGTGATATCTCTTATGGGAACCGAGGTAATTAAGCTCAAAGGGCATAAAGGATGATCCTATTAGAAAAAATCGTTTTTCCTGAAAATGTAACATTTTTCTCAAAAGGTAAAATTAATTTTTTTAGGTAAAAATGCCGAAAATGTTCATTTTCCTCTTTCCTCTTCTCTTCCTTCTAATCGACGCCTCCACTGATTGCTCCCAACCAAACGCCTGCTACGGACTACCCGCCAACTGCCAACCCGACACAAATTGCCATGTGTTTTTCCGTTTCGATGCTCAAGGAAATCTGGATGTTCATCTGAATGACGTCATCGATCCGATGGATTATGTAGCCATGACTGTGAAAGATTTGCCGTCTCCGCTTCTGTCAGAATATCTCATCTGTATTCCTCATCAACGGCAACGTATTCGAGGATACGCCTACAGAGGAGACCCGATTCACATTACAGAGGTAAGATTAGGCGGGAAGTTTGAACTTTTGCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACATTTATCCCACCCTGTA</pcr_primer_p1>
		<pcr_primer_p2>GAACATTTTCGGCATTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>AACATTTATCCCACCCTGTACATGCCCTTTGAGCACAATTATCTCGATTTCTGTAAGAGATATCAAAAACATGTTGACTGATAAAATGTAGCTGATAGAAAGATGAATATTTCTTTAGTTGACAAAATTGTGATATCTCTTATGGGAACCGAGGTAATTAAGCTCAAAGGGCATAAAGGATGATCCTATTAGAAAAAATCGTTTTTCCTGAAAATGTAACATTTTTCTCAAAAGGTAAAATTAATTTTTTTAGGTAAAAATGCCGAAAATGTTC</canonical_amplicon>
		<polymorphic_amplicon>AACATTTATCCCACCCTGTACATGCCCTTTGAGCACAATTATCTCGATTTCTGTAAGAGATATCAAAAACATGTTGACTGATAAAATGTAGCTGATAGAAAGATGAATATTTCWTTAGTTGACAAAATTGTGATATCTCTTATGGGAACCGAGGTAATTAAGCTCAAAGGGCATAAAGGATGATCCTATTAGAAAAAATCGTTTTTCCTGAAAATGTAACATTTTTCTCAAAAGGTAAAATTAATTTTTTTAGGTAAAAATGCCGAAAATGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34241</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>650071</contig_pos>
        <strand></strand>
        <context>tctcttatgg[G/A]aaccgaggta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAGAAAGATGAATATTTCTTTAGTTGACAAAATTGTGATATCTCTTATGG</left_flank>
        <right_flank>AACCGAGGTAATTAAGCTCAAAGGGCATAAAGGATGATCCTATTAGAAAA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGTATAGATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTCGAAATTGCATTCGGTTGTTGTTTTGTTGATTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTACATGCCCTTTGAGCACAATTATCTCGATTTCTGTAAGAGATATCAAAAACATGTTGACTGATAAAATGTAGCTGATAGAAAGATGAATATTTCTTTAGTTGACAAAATTGTGATATCTCTTATGGGAACCGAGGTAATTAAGCTCAAAGGGCATAAAGGATGATCCTATTAGAAAAAATCGTTTTTCCTGAAAATGTAACATTTTTCTCAAAAGGTAAAATTAATTTTTTTAGGTAAAAATGCCGAAAATGTTCATTTTCCTCTTTCCTCTTCTCTTCCTTCTAATCGACGCCTCCACTGATTGCTCCCAACCAAACGCCTGCTACGGACTACCCGCCAACTGCCAACCCGACACAAATTGCCATGTGTTTTTCCGTTTCGATGCTCAAGGAAATCTGGATGTTCATCTGAATGACGTCATCGATCCGATGGATTATGTAGCCATGACTGTGAAAGATTTGCCGTCTCCGCTTCTGTCAGAATATCTCATCTGTATTCCTCATCAACGGCAACGTATTCGAGGATACGCCTACAGAGGAGACCCGATTCACATTACAGAGGTAAGATTAGGCGGGAAGTTTGAACTTTTGCAGTTTAACAGTTCCGGTTGCTATTTTTTTGAGAGA</canonical>
            <polymorphic>ACGTATAGATTGCGCACATAGGGTTTGTTGGAGCAAATACGGTAACAAGTACGGGTTGAAAAACCAAATTTAAAAAGAAAAAATCGAAAAAAAGAGAAAAAGTGAGTCGAAATTGCATTCGGTTGTTGTTTTGTTGATTTTTCTGGGAAATTAGAAAAATTGCGCGGGTAGATCAAAAAAAATTTTAAAAAATGTGTTTTGTTCGAAAAATTATATTTTTAATTTTTCAAATTTTTTGATCTACCGGCGCGAATTTTAAATTTTCCAGATGCTAACTTTGCCTCATTGTTTTGTTGTTTTCCAATTATTTTTTACGATTTTCCGATTTCTACTTTTTTTTTCAAAGATTTTTACAACATTTATCCCACCCTGTACATGCCCTTTGAGCACAATTATCTCGATTTCTGTAAGAGATATCAAAAACATGTTGACTGATAAAATGTAGCTGATAGAAAGATGAATATTTCTTTAGTTGACAAAATTGTGATATCTCTTATGGRAACCGAGGTAATTAAGCTCAAAGGGCATAAAGGATGATCCTATTAGAAAAAATCGTTTTTCCTGAAAATGTAACATTTTTCTCAAAAGGTAAAATTAATTTTTTTAGGTAAAAATGCCGAAAATGTTCATTTTCCTCTTTCCTCTTCTCTTCCTTCTAATCGACGCCTCCACTGATTGCTCCCAACCAAACGCCTGCTACGGACTACCCGCCAACTGCCAACCCGACACAAATTGCCATGTGTTTTTCCGTTTCGATGCTCAAGGAAATCTGGATGTTCATCTGAATGACGTCATCGATCCGATGGATTATGTAGCCATGACTGTGAAAGATTTGCCGTCTCCGCTTCTGTCAGAATATCTCATCTGTATTCCTCATCAACGGCAACGTATTCGAGGATACGCCTACAGAGGAGACCCGATTCACATTACAGAGGTAAGATTAGGCGGGAAGTTTGAACTTTTGCAGTTTAACAGTTCCGGTTGCTATTTTTTTGAGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACATTTATCCCACCCTGTA</pcr_primer_p1>
		<pcr_primer_p2>GAACATTTTCGGCATTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>AACATTTATCCCACCCTGTACATGCCCTTTGAGCACAATTATCTCGATTTCTGTAAGAGATATCAAAAACATGTTGACTGATAAAATGTAGCTGATAGAAAGATGAATATTTCTTTAGTTGACAAAATTGTGATATCTCTTATGGGAACCGAGGTAATTAAGCTCAAAGGGCATAAAGGATGATCCTATTAGAAAAAATCGTTTTTCCTGAAAATGTAACATTTTTCTCAAAAGGTAAAATTAATTTTTTTAGGTAAAAATGCCGAAAATGTTC</canonical_amplicon>
		<polymorphic_amplicon>AACATTTATCCCACCCTGTACATGCCCTTTGAGCACAATTATCTCGATTTCTGTAAGAGATATCAAAAACATGTTGACTGATAAAATGTAGCTGATAGAAAGATGAATATTTCTTTAGTTGACAAAATTGTGATATCTCTTATGGRAACCGAGGTAATTAAGCTCAAAGGGCATAAAGGATGATCCTATTAGAAAAAATCGTTTTTCCTGAAAATGTAACATTTTTCTCAAAAGGTAAAATTAATTTTTTTAGGTAAAAATGCCGAAAATGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34242</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>651158</contig_pos>
        <strand>-</strand>
        <context>AGGTCGTCCG[A/T]CGAGATATga</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGAATCGCCACGTAAGAAGAAGAAGCCAACATCTAGAAGAGGTCGTCCG</left_flank>
        <right_flank>CGAGATATGAGAAGGATGAAGAAGAGGAGGAGGAGGAGTTTGATCCGATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGTCAACGATCCGCCACCTCATTCGTCTGCGCTTTCCTTGCCAATGAACTTCCCGACGACTTCCAGAATTCCGACGTTTTCTCAGTTTCAGAAGGCATCTATTCTGACGATTTGGTGATTCCAACATCGAAATTTCTTTTTAAATCAGAGCAAGTGTTCTCACACCCAATCGCTGCTCGTTTTAGAGATTCTGAAAATTCCGATTTTTTGTCTCCAGATGAGAAAAAGAAGACGTCGGATCTTCTACAAAAAATGAGACGGATTTCTGGAGACGATGACGATGAAGAGGAGAATGATGACGTGGAGGATTCGGATGATTTGGAGGGTTTGATGGATAAGAAGTACAGTACTAGAAGACGTGAGGAGGAGAATAAGAAGAAGAAGGAGGTCAGAAGACGTCCGAAGAAGGAGGAAGAAGAGGAAGAGAATTCTGAAGACGTGGAGGATTCTGAATCGCCACGTAAGAAGAAGAAGCCAACATCTAGAAGAGGTCGTCCGTCGAGATATGAGAAGGATGAAGAAGAGGAGGAGGAGGAGTTTGATCCGATGGAAGAAGGAGACGTTCCGGTGAGTTTGGTTTCTGAATTTTAGAAGACGTCGAAACTTTGTATTTGAATTTTTGACGTCTTCGGAAACCCTGAATATAGAAAAGTGGACGTCTTCAAAAATTCTGGTCATCTGACGTCTCCGAAATTCCAAAAAAAATTTTCAGAAAAGAAGACGTCCAACATCTCGACGTGGCAATTCTGAAGACAACGATGAAAAAGAGGAAGAAAAGCCAAAAAAGAAAACGACGAAAAAAGAAAACCGAAAAAAGAAGGATTCAGATGAGGACGACGACGACTACTATGACAAAAAAGATAATGGGTGATTGTTTCAGTAATTAGTCCTAATTAGTCCGAACTAATTATTACTCTCGTCCTAAATGATTGCACGTTGCGGACAAAAATTCACTCAAAATCGCATCGTCGGTCGCACAGCGAAAACAACAAATGGATG</canonical>
            <polymorphic>TCGTCAACGATCCGCCACCTCATTCGTCTGCGCTTTCCTTGCCAATGAACTTCCCGACGACTTCCAGAATTCCGACGTTTTCTCAGTTTCAGAAGGCATCTATTCTGACGATTTGGTGATTCCAACATCGAAATTTCTTTTTAAATCAGAGCAAGTGTTCTCACACCCAATCGCTGCTCGTTTTAGAGATTCTGAAAATTCCGATTTTTTGTCTCCAGATGAGAAAAAGAAGACGTCGGATCTTCTACAAAAAATGAGACGGATTTCTGGAGACGATGACGATGAAGAGGAGAATGATGACGTGGAGGATTCGGATGATTTGGAGGGTTTGATGGATAAGAAGTACAGTACTAGAAGACGTGAGGAGGAGAATAAGAAGAAGAAGGAGGTCAGAAGACGTCCGAAGAAGGAGGAAGAAGAGGAAGAGAATTCTGAAGACGTGGAGGATTCTGAATCGCCACGTAAGAAGAAGAAGCCAACATCTAGAAGAGGTCGTCCGWCGAGATATGAGAAGGATGAAGAAGAGGAGGAGGAGGAGTTTGATCCGATGGAAGAAGGAGACGTTCCGGTGAGTTTGGTTTCTGAATTTTAGAAGACGTCGAAACTTTGTATTTGAATTTTTGACGTCTTCGGAAACCCTGAATATAGAAAAGTGGACGTCTTCAAAAATTCTGGTCATCTGACGTCTCCGAAATTCCAAAAAAAATTTTCAGAAAAGAAGACGTCCAACATCTCGACGTGGCAATTCTGAAGACAACGATGAAAAAGAGGAAGAAAAGCCAAAAAAGAAAACGACGAAAAAAGAAAACCGAAAAAAGAAGGATTCAGATGAGGACGACGACGACTACTATGACAAAAAAGATAATGGGTGATTGTTTCAGTAATTAGTCCTAATTAGTCCGAACTAATTATTACTCTCGTCCTAAATGATTGCACGTTGCGGACAAAAATTCACTCAAAATCGCATCGTCGGTCGCACAGCGAAAACAACAAATGGATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>372 265 135 129 99</canonical_bands>
                <polymorphic_bands>471 265 135 129</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>267 232 216 151 53 52 18 11</canonical_bands>
                <polymorphic_bands>267 250 216 151 53 52 11</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>264 161 138 132 99 59 58 43 28 18</canonical_bands>
                <polymorphic_bands>363 161 138 132 59 58 43 28 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGAAGACGTGGAGGAT</pcr_primer_p1>
		<pcr_primer_p2>GATGACCAGAATTTTTGAAGAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGAAGACGTGGAGGATTCTGAATCGCCACGTAAGAAGAAGAAGCCAACATCTAGAAGAGGTCGTCCGTCGAGATATGAGAAGGATGAAGAAGAGGAGGAGGAGGAGTTTGATCCGATGGAAGAAGGAGACGTTCCGGTGAGTTTGGTTTCTGAATTTTAGAAGACGTCGAAACTTTGTATTTGAATTTTTGACGTCTTCGGAAACCCTGAATATAGAAAAGTGGACGTCTTCAAAAATTCTGGTCATC</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGAAGACGTGGAGGATTCTGAATCGCCACGTAAGAAGAAGAAGCCAACATCTAGAAGAGGTCGTCCGWCGAGATATGAGAAGGATGAAGAAGAGGAGGAGGAGGAGTTTGATCCGATGGAAGAAGGAGACGTTCCGGTGAGTTTGGTTTCTGAATTTTAGAAGACGTCGAAACTTTGTATTTGAATTTTTGACGTCTTCGGAAACCCTGAATATAGAAAAGTGGACGTCTTCAAAAATTCTGGTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34243</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>653240</contig_pos>
        <strand>+</strand>
        <context>TTTGTAATTT[C/T]CGAACTTATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTATGTATTGGAAAATGCAAATTTCTGATTTTTCTGATTTTTTGTAATTT</left_flank>
        <right_flank>CGAACTTATCGAAATGCCACCAATTTTCTGAATTATAGAAATAAATAGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGAGCTAGCTTCTGAATTTATATTTTTAATTCTAAATTTTGCGAATATTCAATTTTAAGTTTTTTTTGAGAATTTCTGGATTTCTCAAATTTTTCAAAGCATTTCCAGAATCTTCTGAAATTTAAATTTTGGGAATTTAAAAAAATCCTGAGTATTCCCTAAATCGTCAAGTTTCTCAAGTTCTTAATTTCCTAAGTCTTCTGGGGTTTCCAAGTTCCTGAAGTTTCTGGATTACTTGAGTTTTAGGAATTCGTGACGTTTGGGATTTGTTGAAAGTCAGAAACATTGTAAAATTTGGAACTTTGTATTTCGTTTTCCTAGAACTCCTGAAACTTCTCATATTCTAAAGTTTTTTTCGGATTAGGAATTTTGTGTTTTCGAATTTTCGAGTTTTAGAACTTTTTCGGAACTTCCTTCTGAAATAACTGGATTCTACAAATTCTGAATGTATGTATTGGAAAATGCAAATTTCTGATTTTTCTGATTTTTTGTAATTTCCGAACTTATCGAAATGCCACCAATTTTCTGAATTATAGAAATAAATAGACGGTTTGGATTGAAAAGATGGACTGAAATTTAAAAATTTACAATGATTTTGAAACAAATTAAACTTTTCTCAATATTTTGATAATTTTTGTTTTGAATTACAGCCAAATTTGAGCATTTTTCAGAAATATGAGTGGTGAGAATCTCTTGGGTTTTAAATTTTTTGAAAATTTGGGAAAAGCTCGAAATTCAAGAAATTATGTTTCTGAAATTCCTGAAATCTCGAATGCCAAAATTTCTTAATTGACGCATTTTTTTCTCTTGGATTTGCCGAAACTTGAGAAATTTCAGATTTTATTTATTATTTTGCCAAATTATCTATCGATTTCCCCCATGTATTGCAAATAAATATATTTTTTTTTTTTTTTAACTTTTGAAATCTCTGAATTCAATCATAATCATCAAATTTCACCAATGCCCATGGACTAATTAATTTTTCTGTTTTTTTTGAA</canonical>
            <polymorphic>ATCGAGCTAGCTTCTGAATTTATATTTTTAATTCTAAATTTTGCGAATATTCAATTTTAAGTTTTTTTTGAGAATTTCTGGATTTCTCAAATTTTTCAAAGCATTTCCAGAATCTTCTGAAATTTAAATTTTGGGAATTTAAAAAAATCCTGAGTATTCCCTAAATCGTCAAGTTTCTCAAGTTCTTAATTTCCTAAGTCTTCTGGGGTTTCCAAGTTCCTGAAGTTTCTGGATTACTTGAGTTTTAGGAATTCGTGACGTTTGGGATTTGTTGAAAGTCAGAAACATTGTAAAATTTGGAACTTTGTATTTCGTTTTCCTAGAACTCCTGAAACTTCTCATATTCTAAAGTTTTTTTCGGATTAGGAATTTTGTGTTTTCGAATTTTCGAGTTTTAGAACTTTTTCGGAACTTCCTTCTGAAATAACTGGATTCTACAAATTCTGAATGTATGTATTGGAAAATGCAAATTTCTGATTTTTCTGATTTTTTGTAATTTYCGAACTTATCGAAATGCCACCAATTTTCTGAATTATAGAAATAAATAGACGGTTTGGATTGAAAAGATGGACTGAAATTTAAAAATTTACAATGATTTTGAAACAAATTAAACTTTTCTCAATATTTTGATAATTTTTGTTTTGAATTACAGCCAAATTTGAGCATTTTTCAGAAATATGAGTGGTGAGAATCTCTTGGGTTTTAAATTTTTTGAAAATTTGGGAAAAGCTCGAAATTCAAGAAATTATGTTTCTGAAATTCCTGAAATCTCGAATGCCAAAATTTCTTAATTGACGCATTTTTTTCTCTTGGATTTGCCGAAACTTGAGAAATTTCAGATTTTATTTATTATTTTGCCAAATTATCTATCGATTTCCCCCATGTATTGCAAATAAATATATTTTTTTTTTTTTTTAACTTTTGAAATCTCTGAATTCAATCATAATCATCAAATTTCACCAATGCCCATGGACTAATTAATTTTTCTGTTTTTTTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>163 143 103 94 83 83 79 68 48 30 28 25 17 15 12 9</canonical_bands>
                <polymorphic_bands>163 143 103 94 83 83 79 68 48 45 30 25 15 12 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCCTAGAACTCCTGAAACT</pcr_primer_p1>
		<pcr_primer_p2>ATCCAAACCGTCTATTTATTTCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCCTAGAACTCCTGAAACTTCTCATATTCTAAAGTTTTTTTCGGATTAGGAATTTTGTGTTTTCGAATTTTCGAGTTTTAGAACTTTTTCGGAACTTCCTTCTGAAATAACTGGATTCTACAAATTCTGAATGTATGTATTGGAAAATGCAAATTTCTGATTTTTCTGATTTTTTGTAATTTCCGAACTTATCGAAATGCCACCAATTTTCTGAATTATAGAAATAAATAGACGGTTTGGAT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCCTAGAACTCCTGAAACTTCTCATATTCTAAAGTTTTTTTCGGATTAGGAATTTTGTGTTTTCGAATTTTCGAGTTTTAGAACTTTTTCGGAACTTCCTTCTGAAATAACTGGATTCTACAAATTCTGAATGTATGTATTGGAAAATGCAAATTTCTGATTTTTCTGATTTTTTGTAATTTYCGAACTTATCGAAATGCCACCAATTTTCTGAATTATAGAAATAAATAGACGGTTTGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34244</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>690761</contig_pos>
        <strand>+</strand>
        <context>TTGCTTTTTC[C/T]TTAGKTTGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTTTATAGCAATTTATAGTTGTGATATTTCACGATCTTTGCTTTTTC</left_flank>
        <right_flank>TTAGATTGTTTCATCCTAGAATCTTCTAAATCTGATAACAAATCTTGCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATCTCATTTCATTGCTAATTTCTGAACTATTGTCATCTCGAACTGTAAAACAATGAAATGGAGATAATTGGCAAGTTGGCAATTGGCAAACAACAATATTTTGTTCAAAAGCGTTTTCTTTTGAATTCGATTCATTAAAGGGCTCGAACTTTTCGTGTAAACAGTAGGTGCCGCGCCACTGCCAGCTGAGCTACGTGGTCGCAAACGCTGATTGCCGCAAAAATGCATACTCTCGCAAAACACCAAATTTTTAGAAAATCAATTATAGAAATCAAGAGAGCTGTAATGGGACCTACAAACACTCTATTTAACGAGAAAAGTACAGTACTGAAACAGCAAAAACTTTGAAAAACTTTTTCCAGTTTCAGATTCATTTTATCAGTTTTTTTCATATTCAGAAAATCTGCTCATCAGTTCCCTCGTCAAAAAATAATGAAACTTCGAAAAAAATTTTATAGCAATTTATAGTTGTGATATTTCACGATCTTTGCTTTTTCGTTAGATTGTTTCATCCTAGAATCTTCTAAATCTGATAACAAATCTTGCCGTTTCGGGTTTTCGAGATATTCAGTGATTTCTTTAATTTTGATAATAGAGATTTCTTTCTTTTTTCTGATAAATTTCTTTAGTTTTCCTATTCGAAAAATTTGCTAATCTTGCCGGCTGAGAATTTGAATTTCCCCCAAAATAGCTGGGTCTTGGGCTAAGAAAAGCTGAGCTAGAATTTTTGAAATTCGCTGTTTCAAGCTTTCAATATTTTCAGGAATTATTTTAGTTCCGCTAATAGATCCTTCGTTTGTATTAATTCTAAATTCCTCAAAAATTAGGACCCATCAAAATCAGATTCTAAGATTTTGTTATAACCCAAAAATCACAAAAAAATCCCTGTTTCCAATCTCTGTATTCTTGTTAAGCTTTTTAAATTTTCCAAATTTTTTTTATTTCACCTCTTACCTCTGCATGACAAACAAATTGGCCAATGAGCTCATGATATCCGT</canonical>
            <polymorphic>GCATCTCATTTCATTGCTAATTTCTGAACTATTGTCATCTCGAACTGTAAAACAATGAAATGGAGATAATTGGCAAGTTGGCAATTGGCAAACAACAATATTTTGTTCAAAAGCGTTTTCTTTTGAATTCGATTCATTAAAGGGCTCGAACTTTTCGTGTAAACAGTAGGTGCCGCGCCACTGCCAGCTGAGCTACGTGGTCGCAAACGCTGATTGCCGCAAAAATGCATACTCTCGCAAAACACCAAATTTTTAGAAAATCAATTATAGAAATCAAGAGAGCTGTAATGGGACCTACAAACACTCTATTTAACGAGAAAAGTACAGTACTGAAACAGCAAAAACTTTGAAAAACTTTTTCCAGTTTCAGATTCATTTTATCAGTTTTTTTCATATTCAGAAAATCTGCTCATCAGTTCCCTCGTCAAAAAATAATGAAACTTCGAAAAAAATTTTATAGCAATTTATAGTTGTGATATTTCACGATCTTTGCTTTTTCYTTAGATTGTTTCATCCTAGAATCTTCTAAATCTGATAACAAATCTTGCCGTTTCGGGTTTTCGAGATATTCAGTGATTTCTTTAATTTTGATAATAGAGATTTCTTTCTTTTTTCTGATAAATTTCTTTAGTTTTCCTATTCGAAAAATTTGCTAATCTTGCCGGCTGAGAATTTGAATTTCCCCCAAAATAGCTGGGTCTTGGGCTAAGAAAAGCTGAGCTAGAATTTTTGAAATTCGCTGTTTCAAGCTTTCAATATTTTCAGGAATTATTTTAGTTCCGCTAATAGATCCTTCGTTTGTATTAATTCTAAATTCCTCAAAAATTAGGACCCATCAAAATCAGATTCTAAGATTTTGTTATAACCCAAAAATCACAAAAAAATCCCTGTTTCCAATCTCTGTATTCTTGTTAAGCTTTTTAAATTTTCCAAATTTTTTTTATTTCACCTCTTACCTCTGCATGACAAACAAATTGGCCAATGAGCTCATGATATCCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAGCAAAAACTTTGAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GAAATCACTGAATATCTCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AACAGCAAAAACTTTGAAAAACTTTTTCCAGTTTCAGATTCATTTTATCAGTTTTTTTCATATTCAGAAAATCTGCTCATCAGTTCCCTCGTCAAAAAATAATGAAACTTCGAAAAAAATTTTATAGCAATTTATAGTTGTGATATTTCACGATCTTTGCTTTTTCGTTAGATTGTTTCATCCTAGAATCTTCTAAATCTGATAACAAATCTTGCCGTTTCGGGTTTTCGAGATATTCAGTGATTTC</canonical_amplicon>
		<polymorphic_amplicon>AACAGCAAAAACTTTGAAAAACTTTTTCCAGTTTCAGATTCATTTTATCAGTTTTTTTCATATTCAGAAAATCTGCTCATCAGTTCCCTCGTCAAAAAATAATGAAACTTCGAAAAAAATTTTATAGCAATTTATAGTTGTGATATTTCACGATCTTTGCTTTTTCYTTAGATTGTTTCATCCTAGAATCTTCTAAATCTGATAACAAATCTTGCCGTTTCGGGTTTTCGAGATATTCAGTGATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34245</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>690766</contig_pos>
        <strand>+</strand>
        <context>TTTTCYTTAG[G/T]TTGTTTCATC</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTATAGCAATTTATAGTTGTGATATTTCACGATCTTTGCTTTTTCGTTAG</left_flank>
        <right_flank>TTGTTTCATCCTAGAATCTTCTAAATCTGATAACAAATCTTGCCGTTTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATTTCATTGCTAATTTCTGAACTATTGTCATCTCGAACTGTAAAACAATGAAATGGAGATAATTGGCAAGTTGGCAATTGGCAAACAACAATATTTTGTTCAAAAGCGTTTTCTTTTGAATTCGATTCATTAAAGGGCTCGAACTTTTCGTGTAAACAGTAGGTGCCGCGCCACTGCCAGCTGAGCTACGTGGTCGCAAACGCTGATTGCCGCAAAAATGCATACTCTCGCAAAACACCAAATTTTTAGAAAATCAATTATAGAAATCAAGAGAGCTGTAATGGGACCTACAAACACTCTATTTAACGAGAAAAGTACAGTACTGAAACAGCAAAAACTTTGAAAAACTTTTTCCAGTTTCAGATTCATTTTATCAGTTTTTTTCATATTCAGAAAATCTGCTCATCAGTTCCCTCGTCAAAAAATAATGAAACTTCGAAAAAAATTTTATAGCAATTTATAGTTGTGATATTTCACGATCTTTGCTTTTTCGTTAGATTGTTTCATCCTAGAATCTTCTAAATCTGATAACAAATCTTGCCGTTTCGGGTTTTCGAGATATTCAGTGATTTCTTTAATTTTGATAATAGAGATTTCTTTCTTTTTTCTGATAAATTTCTTTAGTTTTCCTATTCGAAAAATTTGCTAATCTTGCCGGCTGAGAATTTGAATTTCCCCCAAAATAGCTGGGTCTTGGGCTAAGAAAAGCTGAGCTAGAATTTTTGAAATTCGCTGTTTCAAGCTTTCAATATTTTCAGGAATTATTTTAGTTCCGCTAATAGATCCTTCGTTTGTATTAATTCTAAATTCCTCAAAAATTAGGACCCATCAAAATCAGATTCTAAGATTTTGTTATAACCCAAAAATCACAAAAAAATCCCTGTTTCCAATCTCTGTATTCTTGTTAAGCTTTTTAAATTTTCCAAATTTTTTTTATTTCACCTCTTACCTCTGCATGACAAACAAATTGGCCAATGAGCTCATGATATCCGTCAGTG</canonical>
            <polymorphic>TCATTTCATTGCTAATTTCTGAACTATTGTCATCTCGAACTGTAAAACAATGAAATGGAGATAATTGGCAAGTTGGCAATTGGCAAACAACAATATTTTGTTCAAAAGCGTTTTCTTTTGAATTCGATTCATTAAAGGGCTCGAACTTTTCGTGTAAACAGTAGGTGCCGCGCCACTGCCAGCTGAGCTACGTGGTCGCAAACGCTGATTGCCGCAAAAATGCATACTCTCGCAAAACACCAAATTTTTAGAAAATCAATTATAGAAATCAAGAGAGCTGTAATGGGACCTACAAACACTCTATTTAACGAGAAAAGTACAGTACTGAAACAGCAAAAACTTTGAAAAACTTTTTCCAGTTTCAGATTCATTTTATCAGTTTTTTTCATATTCAGAAAATCTGCTCATCAGTTCCCTCGTCAAAAAATAATGAAACTTCGAAAAAAATTTTATAGCAATTTATAGTTGTGATATTTCACGATCTTTGCTTTTTCGTTAGKTTGTTTCATCCTAGAATCTTCTAAATCTGATAACAAATCTTGCCGTTTCGGGTTTTCGAGATATTCAGTGATTTCTTTAATTTTGATAATAGAGATTTCTTTCTTTTTTCTGATAAATTTCTTTAGTTTTCCTATTCGAAAAATTTGCTAATCTTGCCGGCTGAGAATTTGAATTTCCCCCAAAATAGCTGGGTCTTGGGCTAAGAAAAGCTGAGCTAGAATTTTTGAAATTCGCTGTTTCAAGCTTTCAATATTTTCAGGAATTATTTTAGTTCCGCTAATAGATCCTTCGTTTGTATTAATTCTAAATTCCTCAAAAATTAGGACCCATCAAAATCAGATTCTAAGATTTTGTTATAACCCAAAAATCACAAAAAAATCCCTGTTTCCAATCTCTGTATTCTTGTTAAGCTTTTTAAATTTTCCAAATTTTTTTTATTTCACCTCTTACCTCTGCATGACAAACAAATTGGCCAATGAGCTCATGATATCCGTCAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAGCAAAAACTTTGAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GAAATCACTGAATATCTCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AACAGCAAAAACTTTGAAAAACTTTTTCCAGTTTCAGATTCATTTTATCAGTTTTTTTCATATTCAGAAAATCTGCTCATCAGTTCCCTCGTCAAAAAATAATGAAACTTCGAAAAAAATTTTATAGCAATTTATAGTTGTGATATTTCACGATCTTTGCTTTTTCGTTAGATTGTTTCATCCTAGAATCTTCTAAATCTGATAACAAATCTTGCCGTTTCGGGTTTTCGAGATATTCAGTGATTTC</canonical_amplicon>
		<polymorphic_amplicon>AACAGCAAAAACTTTGAAAAACTTTTTCCAGTTTCAGATTCATTTTATCAGTTTTTTTCATATTCAGAAAATCTGCTCATCAGTTCCCTCGTCAAAAAATAATGAAACTTCGAAAAAAATTTTATAGCAATTTATAGTTGTGATATTTCACGATCTTTGCTTTTTCGTTAGKTTGTTTCATCCTAGAATCTTCTAAATCTGATAACAAATCTTGCCGTTTCGGGTTTTCGAGATATTCAGTGATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34246</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>690806</contig_pos>
        <strand>+</strand>
        <context>ATAACAAATC[G/T]TGCCGTTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTCGTTAGATTGTTTCATCCTAGAATCTTCTAAATCTGATAACAAATC</left_flank>
        <right_flank>TGCCGTTTCGGGTTTTCGAGATATTCAGTGATTTCTTTAATTTTGATAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTAAAACAATGAAATGGAGATAATTGGCAAGTTGGCAATTGGCAAACAACAATATTTTGTTCAAAAGCGTTTTCTTTTGAATTCGATTCATTAAAGGGCTCGAACTTTTCGTGTAAACAGTAGGTGCCGCGCCACTGCCAGCTGAGCTACGTGGTCGCAAACGCTGATTGCCGCAAAAATGCATACTCTCGCAAAACACCAAATTTTTAGAAAATCAATTATAGAAATCAAGAGAGCTGTAATGGGACCTACAAACACTCTATTTAACGAGAAAAGTACAGTACTGAAACAGCAAAAACTTTGAAAAACTTTTTCCAGTTTCAGATTCATTTTATCAGTTTTTTTCATATTCAGAAAATCTGCTCATCAGTTCCCTCGTCAAAAAATAATGAAACTTCGAAAAAAATTTTATAGCAATTTATAGTTGTGATATTTCACGATCTTTGCTTTTTCGTTAGATTGTTTCATCCTAGAATCTTCTAAATCTGATAACAAATCTTGCCGTTTCGGGTTTTCGAGATATTCAGTGATTTCTTTAATTTTGATAATAGAGATTTCTTTCTTTTTTCTGATAAATTTCTTTAGTTTTCCTATTCGAAAAATTTGCTAATCTTGCCGGCTGAGAATTTGAATTTCCCCCAAAATAGCTGGGTCTTGGGCTAAGAAAAGCTGAGCTAGAATTTTTGAAATTCGCTGTTTCAAGCTTTCAATATTTTCAGGAATTATTTTAGTTCCGCTAATAGATCCTTCGTTTGTATTAATTCTAAATTCCTCAAAAATTAGGACCCATCAAAATCAGATTCTAAGATTTTGTTATAACCCAAAAATCACAAAAAAATCCCTGTTTCCAATCTCTGTATTCTTGTTAAGCTTTTTAAATTTTCCAAATTTTTTTTATTTCACCTCTTACCTCTGCATGACAAACAAATTGGCCAATGAGCTCATGATATCCGTCAGTGATTTATTTGTAATTAACGCTGAGCAAGGTCTCATAATTTT</canonical>
            <polymorphic>TGTAAAACAATGAAATGGAGATAATTGGCAAGTTGGCAATTGGCAAACAACAATATTTTGTTCAAAAGCGTTTTCTTTTGAATTCGATTCATTAAAGGGCTCGAACTTTTCGTGTAAACAGTAGGTGCCGCGCCACTGCCAGCTGAGCTACGTGGTCGCAAACGCTGATTGCCGCAAAAATGCATACTCTCGCAAAACACCAAATTTTTAGAAAATCAATTATAGAAATCAAGAGAGCTGTAATGGGACCTACAAACACTCTATTTAACGAGAAAAGTACAGTACTGAAACAGCAAAAACTTTGAAAAACTTTTTCCAGTTTCAGATTCATTTTATCAGTTTTTTTCATATTCAGAAAATCTGCTCATCAGTTCCCTCGTCAAAAAATAATGAAACTTCGAAAAAAATTTTATAGCAATTTATAGTTGTGATATTTCACGATCTTTGCTTTTTCGTTAGATTGTTTCATCCTAGAATCTTCTAAATCTGATAACAAATCKTGCCGTTTCGGGTTTTCGAGATATTCAGTGATTTCTTTAATTTTGATAATAGAGATTTCTTTCTTTTTTCTGATAAATTTCTTTAGTTTTCCTATTCGAAAAATTTGCTAATCTTGCCGGCTGAGAATTTGAATTTCCCCCAAAATAGCTGGGTCTTGGGCTAAGAAAAGCTGAGCTAGAATTTTTGAAATTCGCTGTTTCAAGCTTTCAATATTTTCAGGAATTATTTTAGTTCCGCTAATAGATCCTTCGTTTGTATTAATTCTAAATTCCTCAAAAATTAGGACCCATCAAAATCAGATTCTAAGATTTTGTTATAACCCAAAAATCACAAAAAAATCCCTGTTTCCAATCTCTGTATTCTTGTTAAGCTTTTTAAATTTTCCAAATTTTTTTTATTTCACCTCTTACCTCTGCATGACAAACAAATTGGCCAATGAGCTCATGATATCCGTCAGTGATTTATTTGTAATTAACGCTGAGCAAGGTCTCATAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTCACGATCTTTGCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTCTAGCTCAGCTTTTCTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATTTCACGATCTTTGCTTTTTCGTTAGATTGTTTCATCCTAGAATCTTCTAAATCTGATAACAAATCTTGCCGTTTCGGGTTTTCGAGATATTCAGTGATTTCTTTAATTTTGATAATAGAGATTTCTTTCTTTTTTCTGATAAATTTCTTTAGTTTTCCTATTCGAAAAATTTGCTAATCTTGCCGGCTGAGAATTTGAATTTCCCCCAAAATAGCTGGGTCTTGGGCTAAGAAAAGCTGAGCTAGAAT</canonical_amplicon>
		<polymorphic_amplicon>TATTTCACGATCTTTGCTTTTTCGTTAGATTGTTTCATCCTAGAATCTTCTAAATCTGATAACAAATCKTGCCGTTTCGGGTTTTCGAGATATTCAGTGATTTCTTTAATTTTGATAATAGAGATTTCTTTCTTTTTTCTGATAAATTTCTTTAGTTTTCCTATTCGAAAAATTTGCTAATCTTGCCGGCTGAGAATTTGAATTTCCCCCAAAATAGCTGGGTCTTGGGCTAAGAAAAGCTGAGCTAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34247</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>691962</contig_pos>
        <strand></strand>
        <context>CCGGGAGAGA[G/A]AAGGGAGGGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AACGGCTGCGCATGCACCCAGTTGTGCCATGAAGGCCACACCGGGAGAGA</left_flank>
        <right_flank>AAGGGAGGGCGTACATGTTCTACCCTTTGAGAAAGAGAAAGCGAAAAGTG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGTAATTAGAGCCCCTATTCATCTTATTCTTCTGAATAGGTCCTTTGATTGCTCCTTGATTGCTCAGCTTAGAAGTTTTGATGTTTCTTTTTCGATTCAAAAAGTGAATAGCTAGCTTATGACACATAAGCTAGCTTTGATGAACCTTATGGATCACAAGGTTTTTGGACTATTTTCGAACTTTCAGAATGTTTCCAAAGATCCAAAAATTCAACTTAAAAAAACATTTTTAAGGATGAATAAAACCAAAATTAGGGGGATTTTTGATGTTTCATGATCTATCAGGCACAAATCAAAAATAGATTTTTTGTATGTTCCAATTTTTATGATTCTTCCTTATATATAAAACGCTAGACGTGTCTGTTGGTCCTAGTGTCCGGCTGTCCGGTTTTGGGTTTCAAATAAGAATTAGGCCGCCGCCAAAACTGAACCCGCGGCCCTTCGGACAACGGCTGCGCATGCACCCAGTTGTGCCATGAAGGCCACACCGGGAGAGAGAAGGGAGGGCGTACATGTTCTACCCTTTGAGAAAGAGAAAGCGAAAAGTGAGGGGTGGAGCGACAAACCAGTAAAAATATTGAATTGCGCCGAAGGCGCAGCAGCCAGCAGGCTGGTATAACATAATACTAAAACATGGTCATTCAGATGCTATGAGAATATTGAAACATAATTTTTTGGAAAATCGATTTTTTCCAGAAGGGGTCAAATCTATTGAAATTTAAATTTTGAGGTTTCAGAAAGTTTTTTAAAACCCTAAAATGTTGGCTTCGATTTCTTTTTAATTGGCCAAAGAATAGTTTCAGGAAAATCTAGATGAGTTCGAAATTTCAAAAAATCAAAAATTAGAGAAAATTCGAGAAGCTGAGCAATTTACCTGGGTCCTCCAGGGCGCTGGGTCGATAAATTTAGTGAAAAGAATCTAATGTTTCGAACTTTTTAGAATGCTAATTTTATTTTTATAAGTTTATACATGATCGAAAAAAGACAAAATTAAAAAA</canonical>
            <polymorphic>CCAGTAATTAGAGCCCCTATTCATCTTATTCTTCTGAATAGGTCCTTTGATTGCTCCTTGATTGCTCAGCTTAGAAGTTTTGATGTTTCTTTTTCGATTCAAAAAGTGAATAGCTAGCTTATGACACATAAGCTAGCTTTGATGAACCTTATGGATCACAAGGTTTTTGGACTATTTTCGAACTTTCAGAATGTTTCCAAAGATCCAAAAATTCAACTTAAAAAAACATTTTTAAGGATGAATAAAACCAAAATTAGGGGGATTTTTGATGTTTCATGATCTATCAGGCACAAATCAAAAATAGATTTTTTGTATGTTCCAATTTTTATGATTCTTCCTTATATATAAAACGCTAGACGTGTCTGTTGGTCCTAGTGTCCGGCTGTCCGGTTTTGGGTTTCAAATAAGAATTAGGCCGCCGCCAAAACTGAACCCGCGGCCCTTCGGACAACGGCTGCGCATGCACCCAGTTGTGCCATGAAGGCCACACCGGGAGAGARAAGGGAGGGCGTACATGTTCTACCCTTTGAGAAAGAGAAAGCGAAAAGTGAGGGGTGGAGCGACAAACCAGTAAAAATATTGAATTGCGCCGAAGGCGCAGCAGCCAGCAGGCTGGTATAACATAATACTAAAACATGGTCATTCAGATGCTATGAGAATATTGAAACATAATTTTTTGGAAAATCGATTTTTTCCAGAAGGGGTCAAATCTATTGAAATTTAAATTTTGAGGTTTCAGAAAGTTTTTTAAAACCCTAAAATGTTGGCTTCGATTTCTTTTTAATTGGCCAAAGAATAGTTTCAGGAAAATCTAGATGAGTTCGAAATTTCAAAAAATCAAAAATTAGAGAAAATTCGAGAAGCTGAGCAATTTACCTGGGTCCTCCAGGGCGCTGGGTCGATAAATTTAGTGAAAAGAATCTAATGTTTCGAACTTTTTAGAATGCTAATTTTATTTTTATAAGTTTATACATGATCGAAAAAAGACAAAATTAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGGTTTCAAATAAGAATTAGG</pcr_primer_p1>
		<pcr_primer_p2>TGAATGACCATGTTTTAGTATTATG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TGGGTTTCAAATAAGAATTAGGCCGCCGCCAAAACTGAACCCGCGGCCCTTCGGACAACGGCTGCGCATGCACCCAGTTGTGCCATGAAGGCCACACCGGGAGAGAGAAGGGAGGGCGTACATGTTCTACCCTTTGAGAAAGAGAAAGCGAAAAGTGAGGGGTGGAGCGACAAACCAGTAAAAATATTGAATTGCGCCGAAGGCGCAGCAGCCAGCAGGCTGGTATAACATAATACTAAAACATGGTCATTCA</canonical_amplicon>
		<polymorphic_amplicon>TGGGTTTCAAATAAGAATTAGGCCGCCGCCAAAACTGAACCCGCGGCCCTTCGGACAACGGCTGCGCATGCACCCAGTTGTGCCATGAAGGCCACACCGGGAGAGARAAGGGAGGGCGTACATGTTCTACCCTTTGAGAAAGAGAAAGCGAAAAGTGAGGGGTGGAGCGACAAACCAGTAAAAATATTGAATTGCGCCGAAGGCGCAGCAGCCAGCAGGCTGGTATAACATAATACTAAAACATGGTCATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34248</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>692049</contig_pos>
        <strand></strand>
        <context>atattgaatt[G/A]cgccgaaggc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAAAGCGAAAAGTGAGGGGTGGAGCGACAAACCAGTAAAAATATTGAATT</left_flank>
        <right_flank>CGCCGAAGGCGCAGCAGCCAGCAGGCTGGTATAACATAATACTAAAACAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTTTTCGATTCAAAAAGTGAATAGCTAGCTTATGACACATAAGCTAGCTTTGATGAACCTTATGGATCACAAGGTTTTTGGACTATTTTCGAACTTTCAGAATGTTTCCAAAGATCCAAAAATTCAACTTAAAAAAACATTTTTAAGGATGAATAAAACCAAAATTAGGGGGATTTTTGATGTTTCATGATCTATCAGGCACAAATCAAAAATAGATTTTTTGTATGTTCCAATTTTTATGATTCTTCCTTATATATAAAACGCTAGACGTGTCTGTTGGTCCTAGTGTCCGGCTGTCCGGTTTTGGGTTTCAAATAAGAATTAGGCCGCCGCCAAAACTGAACCCGCGGCCCTTCGGACAACGGCTGCGCATGCACCCAGTTGTGCCATGAAGGCCACACCGGGAGAGAGAAGGGAGGGCGTACATGTTCTACCCTTTGAGAAAGAGAAAGCGAAAAGTGAGGGGTGGAGCGACAAACCAGTAAAAATATTGAATTGCGCCGAAGGCGCAGCAGCCAGCAGGCTGGTATAACATAATACTAAAACATGGTCATTCAGATGCTATGAGAATATTGAAACATAATTTTTTGGAAAATCGATTTTTTCCAGAAGGGGTCAAATCTATTGAAATTTAAATTTTGAGGTTTCAGAAAGTTTTTTAAAACCCTAAAATGTTGGCTTCGATTTCTTTTTAATTGGCCAAAGAATAGTTTCAGGAAAATCTAGATGAGTTCGAAATTTCAAAAAATCAAAAATTAGAGAAAATTCGAGAAGCTGAGCAATTTACCTGGGTCCTCCAGGGCGCTGGGTCGATAAATTTAGTGAAAAGAATCTAATGTTTCGAACTTTTTAGAATGCTAATTTTATTTTTATAAGTTTATACATGATCGAAAAAAGACAAAATTAAAAAAATTTCATTTTAAAAAACCGAATCAAAATTTACCGATTTTCAAATTATGCATCGAGAGCTGCTAACGCGCTTCATTGCTAAAAATAGA</canonical>
            <polymorphic>TCTTTTTCGATTCAAAAAGTGAATAGCTAGCTTATGACACATAAGCTAGCTTTGATGAACCTTATGGATCACAAGGTTTTTGGACTATTTTCGAACTTTCAGAATGTTTCCAAAGATCCAAAAATTCAACTTAAAAAAACATTTTTAAGGATGAATAAAACCAAAATTAGGGGGATTTTTGATGTTTCATGATCTATCAGGCACAAATCAAAAATAGATTTTTTGTATGTTCCAATTTTTATGATTCTTCCTTATATATAAAACGCTAGACGTGTCTGTTGGTCCTAGTGTCCGGCTGTCCGGTTTTGGGTTTCAAATAAGAATTAGGCCGCCGCCAAAACTGAACCCGCGGCCCTTCGGACAACGGCTGCGCATGCACCCAGTTGTGCCATGAAGGCCACACCGGGAGAGAGAAGGGAGGGCGTACATGTTCTACCCTTTGAGAAAGAGAAAGCGAAAAGTGAGGGGTGGAGCGACAAACCAGTAAAAATATTGAATTRCGCCGAAGGCGCAGCAGCCAGCAGGCTGGTATAACATAATACTAAAACATGGTCATTCAGATGCTATGAGAATATTGAAACATAATTTTTTGGAAAATCGATTTTTTCCAGAAGGGGTCAAATCTATTGAAATTTAAATTTTGAGGTTTCAGAAAGTTTTTTAAAACCCTAAAATGTTGGCTTCGATTTCTTTTTAATTGGCCAAAGAATAGTTTCAGGAAAATCTAGATGAGTTCGAAATTTCAAAAAATCAAAAATTAGAGAAAATTCGAGAAGCTGAGCAATTTACCTGGGTCCTCCAGGGCGCTGGGTCGATAAATTTAGTGAAAAGAATCTAATGTTTCGAACTTTTTAGAATGCTAATTTTATTTTTATAAGTTTATACATGATCGAAAAAAGACAAAATTAAAAAAATTTCATTTTAAAAAACCGAATCAAAATTTACCGATTTTCAAATTATGCATCGAGAGCTGCTAACGCGCTTCATTGCTAAAAATAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>372 295 175 130 19 9</canonical_bands>
                <polymorphic_bands>372 295 175 139 19</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>461 373 112 33 21</canonical_bands>
                <polymorphic_bands>459 373 114 33 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTACCCTTTGAGAAAGAGAAAG</pcr_primer_p1>
		<pcr_primer_p2>AGCCAACATTTTAGGGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTACCCTTTGAGAAAGAGAAAGCGAAAAGTGAGGGGTGGAGCGACAAACCAGTAAAAATATTGAATTGCGCCGAAGGCGCAGCAGCCAGCAGGCTGGTATAACATAATACTAAAACATGGTCATTCAGATGCTATGAGAATATTGAAACATAATTTTTTGGAAAATCGATTTTTTCCAGAAGGGGTCAAATCTATTGAAATTTAAATTTTGAGGTTTCAGAAAGTTTTTTAAAACCCTAAAATGTTGGCT</canonical_amplicon>
		<polymorphic_amplicon>TCTACCCTTTGAGAAAGAGAAAGCGAAAAGTGAGGGGTGGAGCGACAAACCAGTAAAAATATTGAATTRCGCCGAAGGCGCAGCAGCCAGCAGGCTGGTATAACATAATACTAAAACATGGTCATTCAGATGCTATGAGAATATTGAAACATAATTTTTTGGAAAATCGATTTTTTCCAGAAGGGGTCAAATCTATTGAAATTTAAATTTTGAGGTTTCAGAAAGTTTTTTAAAACCCTAAAATGTTGGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34249</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>692124</contig_pos>
        <strand>+</strand>
        <context>TATGAGAATA[G/T]TGAAACATAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCTGGTATAACATAATACTAAAACATGGTCATTCAGATGCTATGAGAATA</left_flank>
        <right_flank>TGAAACATAATTTTTTGGAAAATCGATTTTTTCCAGAAGGGGTCAAATCT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTTGGACTATTTTCGAACTTTCAGAATGTTTCCAAAGATCCAAAAATTCAACTTAAAAAAACATTTTTAAGGATGAATAAAACCAAAATTAGGGGGATTTTTGATGTTTCATGATCTATCAGGCACAAATCAAAAATAGATTTTTTGTATGTTCCAATTTTTATGATTCTTCCTTATATATAAAACGCTAGACGTGTCTGTTGGTCCTAGTGTCCGGCTGTCCGGTTTTGGGTTTCAAATAAGAATTAGGCCGCCGCCAAAACTGAACCCGCGGCCCTTCGGACAACGGCTGCGCATGCACCCAGTTGTGCCATGAAGGCCACACCGGGAGAGAGAAGGGAGGGCGTACATGTTCTACCCTTTGAGAAAGAGAAAGCGAAAAGTGAGGGGTGGAGCGACAAACCAGTAAAAATATTGAATTGCGCCGAAGGCGCAGCAGCCAGCAGGCTGGTATAACATAATACTAAAACATGGTCATTCAGATGCTATGAGAATATTGAAACATAATTTTTTGGAAAATCGATTTTTTCCAGAAGGGGTCAAATCTATTGAAATTTAAATTTTGAGGTTTCAGAAAGTTTTTTAAAACCCTAAAATGTTGGCTTCGATTTCTTTTTAATTGGCCAAAGAATAGTTTCAGGAAAATCTAGATGAGTTCGAAATTTCAAAAAATCAAAAATTAGAGAAAATTCGAGAAGCTGAGCAATTTACCTGGGTCCTCCAGGGCGCTGGGTCGATAAATTTAGTGAAAAGAATCTAATGTTTCGAACTTTTTAGAATGCTAATTTTATTTTTATAAGTTTATACATGATCGAAAAAAGACAAAATTAAAAAAATTTCATTTTAAAAAACCGAATCAAAATTTACCGATTTTCAAATTATGCATCGAGAGCTGCTAACGCGCTTCATTGCTAAAAATAGAATTCCTTGTTCGACCCAATTTATCTCGGTTACTGTAACAGATATCAAAATGTTGTCCACTGATAAATTGTGTTAA</canonical>
            <polymorphic>GTTTTTGGACTATTTTCGAACTTTCAGAATGTTTCCAAAGATCCAAAAATTCAACTTAAAAAAACATTTTTAAGGATGAATAAAACCAAAATTAGGGGGATTTTTGATGTTTCATGATCTATCAGGCACAAATCAAAAATAGATTTTTTGTATGTTCCAATTTTTATGATTCTTCCTTATATATAAAACGCTAGACGTGTCTGTTGGTCCTAGTGTCCGGCTGTCCGGTTTTGGGTTTCAAATAAGAATTAGGCCGCCGCCAAAACTGAACCCGCGGCCCTTCGGACAACGGCTGCGCATGCACCCAGTTGTGCCATGAAGGCCACACCGGGAGAGAGAAGGGAGGGCGTACATGTTCTACCCTTTGAGAAAGAGAAAGCGAAAAGTGAGGGGTGGAGCGACAAACCAGTAAAAATATTGAATTGCGCCGAAGGCGCAGCAGCCAGCAGGCTGGTATAACATAATACTAAAACATGGTCATTCAGATGCTATGAGAATAKTGAAACATAATTTTTTGGAAAATCGATTTTTTCCAGAAGGGGTCAAATCTATTGAAATTTAAATTTTGAGGTTTCAGAAAGTTTTTTAAAACCCTAAAATGTTGGCTTCGATTTCTTTTTAATTGGCCAAAGAATAGTTTCAGGAAAATCTAGATGAGTTCGAAATTTCAAAAAATCAAAAATTAGAGAAAATTCGAGAAGCTGAGCAATTTACCTGGGTCCTCCAGGGCGCTGGGTCGATAAATTTAGTGAAAAGAATCTAATGTTTCGAACTTTTTAGAATGCTAATTTTATTTTTATAAGTTTATACATGATCGAAAAAAGACAAAATTAAAAAAATTTCATTTTAAAAAACCGAATCAAAATTTACCGATTTTCAAATTATGCATCGAGAGCTGCTAACGCGCTTCATTGCTAAAAATAGAATTCCTTGTTCGACCCAATTTATCTCGGTTACTGTAACAGATATCAAAATGTTGTCCACTGATAAATTGTGTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 416 82</canonical_bands>
                <polymorphic_bands>584 416</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTACCCTTTGAGAAAGAGAAAG</pcr_primer_p1>
		<pcr_primer_p2>AGCCAACATTTTAGGGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTACCCTTTGAGAAAGAGAAAGCGAAAAGTGAGGGGTGGAGCGACAAACCAGTAAAAATATTGAATTGCGCCGAAGGCGCAGCAGCCAGCAGGCTGGTATAACATAATACTAAAACATGGTCATTCAGATGCTATGAGAATATTGAAACATAATTTTTTGGAAAATCGATTTTTTCCAGAAGGGGTCAAATCTATTGAAATTTAAATTTTGAGGTTTCAGAAAGTTTTTTAAAACCCTAAAATGTTGGCT</canonical_amplicon>
		<polymorphic_amplicon>TCTACCCTTTGAGAAAGAGAAAGCGAAAAGTGAGGGGTGGAGCGACAAACCAGTAAAAATATTGAATTGCGCCGAAGGCGCAGCAGCCAGCAGGCTGGTATAACATAATACTAAAACATGGTCATTCAGATGCTATGAGAATAKTGAAACATAATTTTTTGGAAAATCGATTTTTTCCAGAAGGGGTCAAATCTATTGAAATTTAAATTTTGAGGTTTCAGAAAGTTTTTTAAAACCCTAAAATGTTGGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34250</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>692147</contig_pos>
        <strand>+</strand>
        <context>TTTTGGAAAA[C/T]CGATTTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATGGTCATTCAGATGCTATGAGAATATTGAAACATAATTTTTTGGAAAA</left_flank>
        <right_flank>CGATTTTTTCCAGAAGGGGTCAAATCTATTGAAATTTAAATTTTGAGGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGAATGTTTCCAAAGATCCAAAAATTCAACTTAAAAAAACATTTTTAAGGATGAATAAAACCAAAATTAGGGGGATTTTTGATGTTTCATGATCTATCAGGCACAAATCAAAAATAGATTTTTTGTATGTTCCAATTTTTATGATTCTTCCTTATATATAAAACGCTAGACGTGTCTGTTGGTCCTAGTGTCCGGCTGTCCGGTTTTGGGTTTCAAATAAGAATTAGGCCGCCGCCAAAACTGAACCCGCGGCCCTTCGGACAACGGCTGCGCATGCACCCAGTTGTGCCATGAAGGCCACACCGGGAGAGAGAAGGGAGGGCGTACATGTTCTACCCTTTGAGAAAGAGAAAGCGAAAAGTGAGGGGTGGAGCGACAAACCAGTAAAAATATTGAATTGCGCCGAAGGCGCAGCAGCCAGCAGGCTGGTATAACATAATACTAAAACATGGTCATTCAGATGCTATGAGAATATTGAAACATAATTTTTTGGAAAATCGATTTTTTCCAGAAGGGGTCAAATCTATTGAAATTTAAATTTTGAGGTTTCAGAAAGTTTTTTAAAACCCTAAAATGTTGGCTTCGATTTCTTTTTAATTGGCCAAAGAATAGTTTCAGGAAAATCTAGATGAGTTCGAAATTTCAAAAAATCAAAAATTAGAGAAAATTCGAGAAGCTGAGCAATTTACCTGGGTCCTCCAGGGCGCTGGGTCGATAAATTTAGTGAAAAGAATCTAATGTTTCGAACTTTTTAGAATGCTAATTTTATTTTTATAAGTTTATACATGATCGAAAAAAGACAAAATTAAAAAAATTTCATTTTAAAAAACCGAATCAAAATTTACCGATTTTCAAATTATGCATCGAGAGCTGCTAACGCGCTTCATTGCTAAAAATAGAATTCCTTGTTCGACCCAATTTATCTCGGTTACTGTAACAGATATCAAAATGTTGTCCACTGATAAATTGTGTTAAACTTTATCATTAACATTTTGTAA</canonical>
            <polymorphic>TCAGAATGTTTCCAAAGATCCAAAAATTCAACTTAAAAAAACATTTTTAAGGATGAATAAAACCAAAATTAGGGGGATTTTTGATGTTTCATGATCTATCAGGCACAAATCAAAAATAGATTTTTTGTATGTTCCAATTTTTATGATTCTTCCTTATATATAAAACGCTAGACGTGTCTGTTGGTCCTAGTGTCCGGCTGTCCGGTTTTGGGTTTCAAATAAGAATTAGGCCGCCGCCAAAACTGAACCCGCGGCCCTTCGGACAACGGCTGCGCATGCACCCAGTTGTGCCATGAAGGCCACACCGGGAGAGAGAAGGGAGGGCGTACATGTTCTACCCTTTGAGAAAGAGAAAGCGAAAAGTGAGGGGTGGAGCGACAAACCAGTAAAAATATTGAATTGCGCCGAAGGCGCAGCAGCCAGCAGGCTGGTATAACATAATACTAAAACATGGTCATTCAGATGCTATGAGAATATTGAAACATAATTTTTTGGAAAAYCGATTTTTTCCAGAAGGGGTCAAATCTATTGAAATTTAAATTTTGAGGTTTCAGAAAGTTTTTTAAAACCCTAAAATGTTGGCTTCGATTTCTTTTTAATTGGCCAAAGAATAGTTTCAGGAAAATCTAGATGAGTTCGAAATTTCAAAAAATCAAAAATTAGAGAAAATTCGAGAAGCTGAGCAATTTACCTGGGTCCTCCAGGGCGCTGGGTCGATAAATTTAGTGAAAAGAATCTAATGTTTCGAACTTTTTAGAATGCTAATTTTATTTTTATAAGTTTATACATGATCGAAAAAAGACAAAATTAAAAAAATTTCATTTTAAAAAACCGAATCAAAATTTACCGATTTTCAAATTATGCATCGAGAGCTGCTAACGCGCTTCATTGCTAAAAATAGAATTCCTTGTTCGACCCAATTTATCTCGGTTACTGTAACAGATATCAAAATGTTGTCCACTGATAAATTGTGTTAAACTTTATCATTAACATTTTGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 87 85 74 52 47 46 43 34 31</canonical_bands>
                <polymorphic_bands>586 87 74 52 47 46 43 34 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTAAAACATGGTCATTCAGATG</pcr_primer_p1>
		<pcr_primer_p2>AGGTAAATTGCTCAGCTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACTAAAACATGGTCATTCAGATGCTATGAGAATATTGAAACATAATTTTTTGGAAAATCGATTTTTTCCAGAAGGGGTCAAATCTATTGAAATTTAAATTTTGAGGTTTCAGAAAGTTTTTTAAAACCCTAAAATGTTGGCTTCGATTTCTTTTTAATTGGCCAAAGAATAGTTTCAGGAAAATCTAGATGAGTTCGAAATTTCAAAAAATCAAAAATTAGAGAAAATTCGAGAAGCTGAGCAATTTACCT</canonical_amplicon>
		<polymorphic_amplicon>ACTAAAACATGGTCATTCAGATGCTATGAGAATATTGAAACATAATTTTTTGGAAAAYCGATTTTTTCCAGAAGGGGTCAAATCTATTGAAATTTAAATTTTGAGGTTTCAGAAAGTTTTTTAAAACCCTAAAATGTTGGCTTCGATTTCTTTTTAATTGGCCAAAGAATAGTTTCAGGAAAATCTAGATGAGTTCGAAATTTCAAAAAATCAAAAATTAGAGAAAATTCGAGAAGCTGAGCAATTTACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34251</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>692193</contig_pos>
        <strand>+</strand>
        <context>TTAAATTTTG[A/C]GGTTTCAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAATCGATTTTTTCCAGAAGGGGTCAAATCTATTGAAATTTAAATTTTG</left_flank>
        <right_flank>GGTTTCAGAAAGTTTTTTAAAACCCTAAAATGTTGGCTTCGATTTCTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAGGATGAATAAAACCAAAATTAGGGGGATTTTTGATGTTTCATGATCTATCAGGCACAAATCAAAAATAGATTTTTTGTATGTTCCAATTTTTATGATTCTTCCTTATATATAAAACGCTAGACGTGTCTGTTGGTCCTAGTGTCCGGCTGTCCGGTTTTGGGTTTCAAATAAGAATTAGGCCGCCGCCAAAACTGAACCCGCGGCCCTTCGGACAACGGCTGCGCATGCACCCAGTTGTGCCATGAAGGCCACACCGGGAGAGAGAAGGGAGGGCGTACATGTTCTACCCTTTGAGAAAGAGAAAGCGAAAAGTGAGGGGTGGAGCGACAAACCAGTAAAAATATTGAATTGCGCCGAAGGCGCAGCAGCCAGCAGGCTGGTATAACATAATACTAAAACATGGTCATTCAGATGCTATGAGAATATTGAAACATAATTTTTTGGAAAATCGATTTTTTCCAGAAGGGGTCAAATCTATTGAAATTTAAATTTTGAGGTTTCAGAAAGTTTTTTAAAACCCTAAAATGTTGGCTTCGATTTCTTTTTAATTGGCCAAAGAATAGTTTCAGGAAAATCTAGATGAGTTCGAAATTTCAAAAAATCAAAAATTAGAGAAAATTCGAGAAGCTGAGCAATTTACCTGGGTCCTCCAGGGCGCTGGGTCGATAAATTTAGTGAAAAGAATCTAATGTTTCGAACTTTTTAGAATGCTAATTTTATTTTTATAAGTTTATACATGATCGAAAAAAGACAAAATTAAAAAAATTTCATTTTAAAAAACCGAATCAAAATTTACCGATTTTCAAATTATGCATCGAGAGCTGCTAACGCGCTTCATTGCTAAAAATAGAATTCCTTGTTCGACCCAATTTATCTCGGTTACTGTAACAGATATCAAAATGTTGTCCACTGATAAATTGTGTTAAACTTTATCATTAACATTTTGTAAGTTGACAATTTTAAGATATCTCTCACATTAAACGAGAAAATAGGGT</canonical>
            <polymorphic>TTAAGGATGAATAAAACCAAAATTAGGGGGATTTTTGATGTTTCATGATCTATCAGGCACAAATCAAAAATAGATTTTTTGTATGTTCCAATTTTTATGATTCTTCCTTATATATAAAACGCTAGACGTGTCTGTTGGTCCTAGTGTCCGGCTGTCCGGTTTTGGGTTTCAAATAAGAATTAGGCCGCCGCCAAAACTGAACCCGCGGCCCTTCGGACAACGGCTGCGCATGCACCCAGTTGTGCCATGAAGGCCACACCGGGAGAGAGAAGGGAGGGCGTACATGTTCTACCCTTTGAGAAAGAGAAAGCGAAAAGTGAGGGGTGGAGCGACAAACCAGTAAAAATATTGAATTGCGCCGAAGGCGCAGCAGCCAGCAGGCTGGTATAACATAATACTAAAACATGGTCATTCAGATGCTATGAGAATATTGAAACATAATTTTTTGGAAAATCGATTTTTTCCAGAAGGGGTCAAATCTATTGAAATTTAAATTTTGMGGTTTCAGAAAGTTTTTTAAAACCCTAAAATGTTGGCTTCGATTTCTTTTTAATTGGCCAAAGAATAGTTTCAGGAAAATCTAGATGAGTTCGAAATTTCAAAAAATCAAAAATTAGAGAAAATTCGAGAAGCTGAGCAATTTACCTGGGTCCTCCAGGGCGCTGGGTCGATAAATTTAGTGAAAAGAATCTAATGTTTCGAACTTTTTAGAATGCTAATTTTATTTTTATAAGTTTATACATGATCGAAAAAAGACAAAATTAAAAAAATTTCATTTTAAAAAACCGAATCAAAATTTACCGATTTTCAAATTATGCATCGAGAGCTGCTAACGCGCTTCATTGCTAAAAATAGAATTCCTTGTTCGACCCAATTTATCTCGGTTACTGTAACAGATATCAAAATGTTGTCCACTGATAAATTGTGTTAAACTTTATCATTAACATTTTGTAAGTTGACAATTTTAAGATATCTCTCACATTAAACGAGAAAATAGGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTAAAACATGGTCATTCAGATG</pcr_primer_p1>
		<pcr_primer_p2>AGGTAAATTGCTCAGCTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACTAAAACATGGTCATTCAGATGCTATGAGAATATTGAAACATAATTTTTTGGAAAATCGATTTTTTCCAGAAGGGGTCAAATCTATTGAAATTTAAATTTTGAGGTTTCAGAAAGTTTTTTAAAACCCTAAAATGTTGGCTTCGATTTCTTTTTAATTGGCCAAAGAATAGTTTCAGGAAAATCTAGATGAGTTCGAAATTTCAAAAAATCAAAAATTAGAGAAAATTCGAGAAGCTGAGCAATTTACCT</canonical_amplicon>
		<polymorphic_amplicon>ACTAAAACATGGTCATTCAGATGCTATGAGAATATTGAAACATAATTTTTTGGAAAATCGATTTTTTCCAGAAGGGGTCAAATCTATTGAAATTTAAATTTTGMGGTTTCAGAAAGTTTTTTAAAACCCTAAAATGTTGGCTTCGATTTCTTTTTAATTGGCCAAAGAATAGTTTCAGGAAAATCTAGATGAGTTCGAAATTTCAAAAAATCAAAAATTAGAGAAAATTCGAGAAGCTGAGCAATTTACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34252</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>692285</contig_pos>
        <strand>+</strand>
        <context>TAGATGAGTT[C/T]GAAATTTCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTCTTTTTAATTGGCCAAAGAATAGTTTCAGGAAAATCTAGATGAGTT</left_flank>
        <right_flank>GAAATTTCAAAAAATCAAAAATTAGAGAAAATTCGAGAAGCTGAGCAATT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTATGATTCTTCCTTATATATAAAACGCTAGACGTGTCTGTTGGTCCTAGTGTCCGGCTGTCCGGTTTTGGGTTTCAAATAAGAATTAGGCCGCCGCCAAAACTGAACCCGCGGCCCTTCGGACAACGGCTGCGCATGCACCCAGTTGTGCCATGAAGGCCACACCGGGAGAGAGAAGGGAGGGCGTACATGTTCTACCCTTTGAGAAAGAGAAAGCGAAAAGTGAGGGGTGGAGCGACAAACCAGTAAAAATATTGAATTGCGCCGAAGGCGCAGCAGCCAGCAGGCTGGTATAACATAATACTAAAACATGGTCATTCAGATGCTATGAGAATATTGAAACATAATTTTTTGGAAAATCGATTTTTTCCAGAAGGGGTCAAATCTATTGAAATTTAAATTTTGAGGTTTCAGAAAGTTTTTTAAAACCCTAAAATGTTGGCTTCGATTTCTTTTTAATTGGCCAAAGAATAGTTTCAGGAAAATCTAGATGAGTTCGAAATTTCAAAAAATCAAAAATTAGAGAAAATTCGAGAAGCTGAGCAATTTACCTGGGTCCTCCAGGGCGCTGGGTCGATAAATTTAGTGAAAAGAATCTAATGTTTCGAACTTTTTAGAATGCTAATTTTATTTTTATAAGTTTATACATGATCGAAAAAAGACAAAATTAAAAAAATTTCATTTTAAAAAACCGAATCAAAATTTACCGATTTTCAAATTATGCATCGAGAGCTGCTAACGCGCTTCATTGCTAAAAATAGAATTCCTTGTTCGACCCAATTTATCTCGGTTACTGTAACAGATATCAAAATGTTGTCCACTGATAAATTGTGTTAAACTTTATCATTAACATTTTGTAAGTTGACAATTTTAAGATATCTCTCACATTAAACGAGAAAATAGGGTAAAAAAAGCCGTTTCTTTTATCATAGGTACCATATATCCAAAAATAATAACAATTAAAATTTTAAAAAATAATAAATTAATAAATTAAACTA</canonical>
            <polymorphic>TTTTATGATTCTTCCTTATATATAAAACGCTAGACGTGTCTGTTGGTCCTAGTGTCCGGCTGTCCGGTTTTGGGTTTCAAATAAGAATTAGGCCGCCGCCAAAACTGAACCCGCGGCCCTTCGGACAACGGCTGCGCATGCACCCAGTTGTGCCATGAAGGCCACACCGGGAGAGAGAAGGGAGGGCGTACATGTTCTACCCTTTGAGAAAGAGAAAGCGAAAAGTGAGGGGTGGAGCGACAAACCAGTAAAAATATTGAATTGCGCCGAAGGCGCAGCAGCCAGCAGGCTGGTATAACATAATACTAAAACATGGTCATTCAGATGCTATGAGAATATTGAAACATAATTTTTTGGAAAATCGATTTTTTCCAGAAGGGGTCAAATCTATTGAAATTTAAATTTTGAGGTTTCAGAAAGTTTTTTAAAACCCTAAAATGTTGGCTTCGATTTCTTTTTAATTGGCCAAAGAATAGTTTCAGGAAAATCTAGATGAGTTYGAAATTTCAAAAAATCAAAAATTAGAGAAAATTCGAGAAGCTGAGCAATTTACCTGGGTCCTCCAGGGCGCTGGGTCGATAAATTTAGTGAAAAGAATCTAATGTTTCGAACTTTTTAGAATGCTAATTTTATTTTTATAAGTTTATACATGATCGAAAAAAGACAAAATTAAAAAAATTTCATTTTAAAAAACCGAATCAAAATTTACCGATTTTCAAATTATGCATCGAGAGCTGCTAACGCGCTTCATTGCTAAAAATAGAATTCCTTGTTCGACCCAATTTATCTCGGTTACTGTAACAGATATCAAAATGTTGTCCACTGATAAATTGTGTTAAACTTTATCATTAACATTTTGTAAGTTGACAATTTTAAGATATCTCTCACATTAAACGAGAAAATAGGGTAAAAAAAGCCGTTTCTTTTATCATAGGTACCATATATCCAAAAATAATAACAATTAAAATTTTAAAAAATAATAAATTAATAAATTAAACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>499 393 108</canonical_bands>
                <polymorphic_bands>607 393</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>363 225 85 74 52 47 46 43 34 31</canonical_bands>
                <polymorphic_bands>363 225 86 85 74 47 46 43 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTAAAACATGGTCATTCAGATG</pcr_primer_p1>
		<pcr_primer_p2>AGGTAAATTGCTCAGCTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACTAAAACATGGTCATTCAGATGCTATGAGAATATTGAAACATAATTTTTTGGAAAATCGATTTTTTCCAGAAGGGGTCAAATCTATTGAAATTTAAATTTTGAGGTTTCAGAAAGTTTTTTAAAACCCTAAAATGTTGGCTTCGATTTCTTTTTAATTGGCCAAAGAATAGTTTCAGGAAAATCTAGATGAGTTCGAAATTTCAAAAAATCAAAAATTAGAGAAAATTCGAGAAGCTGAGCAATTTACCT</canonical_amplicon>
		<polymorphic_amplicon>ACTAAAACATGGTCATTCAGATGCTATGAGAATATTGAAACATAATTTTTTGGAAAATCGATTTTTTCCAGAAGGGGTCAAATCTATTGAAATTTAAATTTTGAGGTTTCAGAAAGTTTTTTAAAACCCTAAAATGTTGGCTTCGATTTCTTTTTAATTGGCCAAAGAATAGTTTCAGGAAAATCTAGATGAGTTYGAAATTTCAAAAAATCAAAAATTAGAGAAAATTCGAGAAGCTGAGCAATTTACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34253</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>692390</contig_pos>
        <strand>+</strand>
        <context>GAATCTAATG[C/G]TTCGAACTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGGGTCCTCCAGGGCGCTGGGTCGATAAATTTAGTGAAAAGAATCTAATG</left_flank>
        <right_flank>TTCGAACTTTTTAGAATGCTAATTTTATTTTTATAAGTTTATACATGATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAACCCGCGGCCCTTCGGACAACGGCTGCGCATGCACCCAGTTGTGCCATGAAGGCCACACCGGGAGAGAGAAGGGAGGGCGTACATGTTCTACCCTTTGAGAAAGAGAAAGCGAAAAGTGAGGGGTGGAGCGACAAACCAGTAAAAATATTGAATTGCGCCGAAGGCGCAGCAGCCAGCAGGCTGGTATAACATAATACTAAAACATGGTCATTCAGATGCTATGAGAATATTGAAACATAATTTTTTGGAAAATCGATTTTTTCCAGAAGGGGTCAAATCTATTGAAATTTAAATTTTGAGGTTTCAGAAAGTTTTTTAAAACCCTAAAATGTTGGCTTCGATTTCTTTTTAATTGGCCAAAGAATAGTTTCAGGAAAATCTAGATGAGTTCGAAATTTCAAAAAATCAAAAATTAGAGAAAATTCGAGAAGCTGAGCAATTTACCTGGGTCCTCCAGGGCGCTGGGTCGATAAATTTAGTGAAAAGAATCTAATGTTTCGAACTTTTTAGAATGCTAATTTTATTTTTATAAGTTTATACATGATCGAAAAAAGACAAAATTAAAAAAATTTCATTTTAAAAAACCGAATCAAAATTTACCGATTTTCAAATTATGCATCGAGAGCTGCTAACGCGCTTCATTGCTAAAAATAGAATTCCTTGTTCGACCCAATTTATCTCGGTTACTGTAACAGATATCAAAATGTTGTCCACTGATAAATTGTGTTAAACTTTATCATTAACATTTTGTAAGTTGACAATTTTAAGATATCTCTCACATTAAACGAGAAAATAGGGTAAAAAAAGCCGTTTCTTTTATCATAGGTACCATATATCCAAAAATAATAACAATTAAAATTTTAAAAAATAATAAATTAATAAATTAAACTACAGTAAGATTTCTGGGAATCATAATAGCCAACGGGACCGTTTCAAATTGTGGCATACACAATTCATTGATCATACTGTATTCACAACATCTGGAGCACATTTTGT</canonical>
            <polymorphic>TGAACCCGCGGCCCTTCGGACAACGGCTGCGCATGCACCCAGTTGTGCCATGAAGGCCACACCGGGAGAGAGAAGGGAGGGCGTACATGTTCTACCCTTTGAGAAAGAGAAAGCGAAAAGTGAGGGGTGGAGCGACAAACCAGTAAAAATATTGAATTGCGCCGAAGGCGCAGCAGCCAGCAGGCTGGTATAACATAATACTAAAACATGGTCATTCAGATGCTATGAGAATATTGAAACATAATTTTTTGGAAAATCGATTTTTTCCAGAAGGGGTCAAATCTATTGAAATTTAAATTTTGAGGTTTCAGAAAGTTTTTTAAAACCCTAAAATGTTGGCTTCGATTTCTTTTTAATTGGCCAAAGAATAGTTTCAGGAAAATCTAGATGAGTTCGAAATTTCAAAAAATCAAAAATTAGAGAAAATTCGAGAAGCTGAGCAATTTACCTGGGTCCTCCAGGGCGCTGGGTCGATAAATTTAGTGAAAAGAATCTAATGSTTCGAACTTTTTAGAATGCTAATTTTATTTTTATAAGTTTATACATGATCGAAAAAAGACAAAATTAAAAAAATTTCATTTTAAAAAACCGAATCAAAATTTACCGATTTTCAAATTATGCATCGAGAGCTGCTAACGCGCTTCATTGCTAAAAATAGAATTCCTTGTTCGACCCAATTTATCTCGGTTACTGTAACAGATATCAAAATGTTGTCCACTGATAAATTGTGTTAAACTTTATCATTAACATTTTGTAAGTTGACAATTTTAAGATATCTCTCACATTAAACGAGAAAATAGGGTAAAAAAAGCCGTTTCTTTTATCATAGGTACCATATATCCAAAAATAATAACAATTAAAATTTTAAAAAATAATAAATTAATAAATTAAACTACAGTAAGATTTCTGGGAATCATAATAGCCAACGGGACCGTTTCAAATTGTGGCATACACAATTCATTGATCATACTGTATTCACAACATCTGGAGCACATTTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTTCAGGAAAATCTAGATGAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTTGAAAATCGGTAAATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGTTTCAGGAAAATCTAGATGAGTTCGAAATTTCAAAAAATCAAAAATTAGAGAAAATTCGAGAAGCTGAGCAATTTACCTGGGTCCTCCAGGGCGCTGGGTCGATAAATTTAGTGAAAAGAATCTAATGTTTCGAACTTTTTAGAATGCTAATTTTATTTTTATAAGTTTATACATGATCGAAAAAAGACAAAATTAAAAAAATTTCATTTTAAAAAACCGAATCAAAATTTACCGATTTTCAAAT</canonical_amplicon>
		<polymorphic_amplicon>AGTTTCAGGAAAATCTAGATGAGTTCGAAATTTCAAAAAATCAAAAATTAGAGAAAATTCGAGAAGCTGAGCAATTTACCTGGGTCCTCCAGGGCGCTGGGTCGATAAATTTAGTGAAAAGAATCTAATGSTTCGAACTTTTTAGAATGCTAATTTTATTTTTATAAGTTTATACATGATCGAAAAAAGACAAAATTAAAAAAATTTCATTTTAAAAAACCGAATCAAAATTTACCGATTTTCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34254</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>692422</contig_pos>
        <strand>+</strand>
        <context>ATTTTATTTT[G/T]ATAAGTTTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGTGAAAAGAATCTAATGTTTCGAACTTTTTAGAATGCTAATTTTATTTT</left_flank>
        <right_flank>ATAAGTTTATACATGATCGAAAAAAGACAAAATTAAAAAAATTTCATTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGCACCCAGTTGTGCCATGAAGGCCACACCGGGAGAGAGAAGGGAGGGCGTACATGTTCTACCCTTTGAGAAAGAGAAAGCGAAAAGTGAGGGGTGGAGCGACAAACCAGTAAAAATATTGAATTGCGCCGAAGGCGCAGCAGCCAGCAGGCTGGTATAACATAATACTAAAACATGGTCATTCAGATGCTATGAGAATATTGAAACATAATTTTTTGGAAAATCGATTTTTTCCAGAAGGGGTCAAATCTATTGAAATTTAAATTTTGAGGTTTCAGAAAGTTTTTTAAAACCCTAAAATGTTGGCTTCGATTTCTTTTTAATTGGCCAAAGAATAGTTTCAGGAAAATCTAGATGAGTTCGAAATTTCAAAAAATCAAAAATTAGAGAAAATTCGAGAAGCTGAGCAATTTACCTGGGTCCTCCAGGGCGCTGGGTCGATAAATTTAGTGAAAAGAATCTAATGTTTCGAACTTTTTAGAATGCTAATTTTATTTTTATAAGTTTATACATGATCGAAAAAAGACAAAATTAAAAAAATTTCATTTTAAAAAACCGAATCAAAATTTACCGATTTTCAAATTATGCATCGAGAGCTGCTAACGCGCTTCATTGCTAAAAATAGAATTCCTTGTTCGACCCAATTTATCTCGGTTACTGTAACAGATATCAAAATGTTGTCCACTGATAAATTGTGTTAAACTTTATCATTAACATTTTGTAAGTTGACAATTTTAAGATATCTCTCACATTAAACGAGAAAATAGGGTAAAAAAAGCCGTTTCTTTTATCATAGGTACCATATATCCAAAAATAATAACAATTAAAATTTTAAAAAATAATAAATTAATAAATTAAACTACAGTAAGATTTCTGGGAATCATAATAGCCAACGGGACCGTTTCAAATTGTGGCATACACAATTCATTGATCATACTGTATTCACAACATCTGGAGCACATTTTGTTGGGCTCAATGTTGAAAATTCGAAATCCAAAT</canonical>
            <polymorphic>ATGCACCCAGTTGTGCCATGAAGGCCACACCGGGAGAGAGAAGGGAGGGCGTACATGTTCTACCCTTTGAGAAAGAGAAAGCGAAAAGTGAGGGGTGGAGCGACAAACCAGTAAAAATATTGAATTGCGCCGAAGGCGCAGCAGCCAGCAGGCTGGTATAACATAATACTAAAACATGGTCATTCAGATGCTATGAGAATATTGAAACATAATTTTTTGGAAAATCGATTTTTTCCAGAAGGGGTCAAATCTATTGAAATTTAAATTTTGAGGTTTCAGAAAGTTTTTTAAAACCCTAAAATGTTGGCTTCGATTTCTTTTTAATTGGCCAAAGAATAGTTTCAGGAAAATCTAGATGAGTTCGAAATTTCAAAAAATCAAAAATTAGAGAAAATTCGAGAAGCTGAGCAATTTACCTGGGTCCTCCAGGGCGCTGGGTCGATAAATTTAGTGAAAAGAATCTAATGTTTCGAACTTTTTAGAATGCTAATTTTATTTTKATAAGTTTATACATGATCGAAAAAAGACAAAATTAAAAAAATTTCATTTTAAAAAACCGAATCAAAATTTACCGATTTTCAAATTATGCATCGAGAGCTGCTAACGCGCTTCATTGCTAAAAATAGAATTCCTTGTTCGACCCAATTTATCTCGGTTACTGTAACAGATATCAAAATGTTGTCCACTGATAAATTGTGTTAAACTTTATCATTAACATTTTGTAAGTTGACAATTTTAAGATATCTCTCACATTAAACGAGAAAATAGGGTAAAAAAAGCCGTTTCTTTTATCATAGGTACCATATATCCAAAAATAATAACAATTAAAATTTTAAAAAATAATAAATTAATAAATTAAACTACAGTAAGATTTCTGGGAATCATAATAGCCAACGGGACCGTTTCAAATTGTGGCATACACAATTCATTGATCATACTGTATTCACAACATCTGGAGCACATTTTGTTGGGCTCAATGTTGAAAATTCGAAATCCAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTTCAGGAAAATCTAGATGAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTTGAAAATCGGTAAATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGTTTCAGGAAAATCTAGATGAGTTCGAAATTTCAAAAAATCAAAAATTAGAGAAAATTCGAGAAGCTGAGCAATTTACCTGGGTCCTCCAGGGCGCTGGGTCGATAAATTTAGTGAAAAGAATCTAATGTTTCGAACTTTTTAGAATGCTAATTTTATTTTTATAAGTTTATACATGATCGAAAAAAGACAAAATTAAAAAAATTTCATTTTAAAAAACCGAATCAAAATTTACCGATTTTCAAAT</canonical_amplicon>
		<polymorphic_amplicon>AGTTTCAGGAAAATCTAGATGAGTTCGAAATTTCAAAAAATCAAAAATTAGAGAAAATTCGAGAAGCTGAGCAATTTACCTGGGTCCTCCAGGGCGCTGGGTCGATAAATTTAGTGAAAAGAATCTAATGTTTCGAACTTTTTAGAATGCTAATTTTATTTTKATAAGTTTATACATGATCGAAAAAAGACAAAATTAAAAAAATTTCATTTTAAAAAACCGAATCAAAATTTACCGATTTTCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34255</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>692441</contig_pos>
        <strand></strand>
        <context>ATACATGATC[G/C]AAAAAAGACa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TTCGAACTTTTTAGAATGCTAATTTTATTTTTATAAGTTTATACATGATC</left_flank>
        <right_flank>AAAAAAGACAAAATTAAAAAAATTTCATTTTAAAAAACCGAATCAAAATT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGGCCACACCGGGAGAGAGAAGGGAGGGCGTACATGTTCTACCCTTTGAGAAAGAGAAAGCGAAAAGTGAGGGGTGGAGCGACAAACCAGTAAAAATATTGAATTGCGCCGAAGGCGCAGCAGCCAGCAGGCTGGTATAACATAATACTAAAACATGGTCATTCAGATGCTATGAGAATATTGAAACATAATTTTTTGGAAAATCGATTTTTTCCAGAAGGGGTCAAATCTATTGAAATTTAAATTTTGAGGTTTCAGAAAGTTTTTTAAAACCCTAAAATGTTGGCTTCGATTTCTTTTTAATTGGCCAAAGAATAGTTTCAGGAAAATCTAGATGAGTTCGAAATTTCAAAAAATCAAAAATTAGAGAAAATTCGAGAAGCTGAGCAATTTACCTGGGTCCTCCAGGGCGCTGGGTCGATAAATTTAGTGAAAAGAATCTAATGTTTCGAACTTTTTAGAATGCTAATTTTATTTTTATAAGTTTATACATGATCGAAAAAAGACAAAATTAAAAAAATTTCATTTTAAAAAACCGAATCAAAATTTACCGATTTTCAAATTATGCATCGAGAGCTGCTAACGCGCTTCATTGCTAAAAATAGAATTCCTTGTTCGACCCAATTTATCTCGGTTACTGTAACAGATATCAAAATGTTGTCCACTGATAAATTGTGTTAAACTTTATCATTAACATTTTGTAAGTTGACAATTTTAAGATATCTCTCACATTAAACGAGAAAATAGGGTAAAAAAAGCCGTTTCTTTTATCATAGGTACCATATATCCAAAAATAATAACAATTAAAATTTTAAAAAATAATAAATTAATAAATTAAACTACAGTAAGATTTCTGGGAATCATAATAGCCAACGGGACCGTTTCAAATTGTGGCATACACAATTCATTGATCATACTGTATTCACAACATCTGGAGCACATTTTGTTGGGCTCAATGTTGAAAATTCGAAATCCAAATCGAGCAATTTTTTGGAGCA</canonical>
            <polymorphic>GAAGGCCACACCGGGAGAGAGAAGGGAGGGCGTACATGTTCTACCCTTTGAGAAAGAGAAAGCGAAAAGTGAGGGGTGGAGCGACAAACCAGTAAAAATATTGAATTGCGCCGAAGGCGCAGCAGCCAGCAGGCTGGTATAACATAATACTAAAACATGGTCATTCAGATGCTATGAGAATATTGAAACATAATTTTTTGGAAAATCGATTTTTTCCAGAAGGGGTCAAATCTATTGAAATTTAAATTTTGAGGTTTCAGAAAGTTTTTTAAAACCCTAAAATGTTGGCTTCGATTTCTTTTTAATTGGCCAAAGAATAGTTTCAGGAAAATCTAGATGAGTTCGAAATTTCAAAAAATCAAAAATTAGAGAAAATTCGAGAAGCTGAGCAATTTACCTGGGTCCTCCAGGGCGCTGGGTCGATAAATTTAGTGAAAAGAATCTAATGTTTCGAACTTTTTAGAATGCTAATTTTATTTTTATAAGTTTATACATGATCSAAAAAAGACAAAATTAAAAAAATTTCATTTTAAAAAACCGAATCAAAATTTACCGATTTTCAAATTATGCATCGAGAGCTGCTAACGCGCTTCATTGCTAAAAATAGAATTCCTTGTTCGACCCAATTTATCTCGGTTACTGTAACAGATATCAAAATGTTGTCCACTGATAAATTGTGTTAAACTTTATCATTAACATTTTGTAAGTTGACAATTTTAAGATATCTCTCACATTAAACGAGAAAATAGGGTAAAAAAAGCCGTTTCTTTTATCATAGGTACCATATATCCAAAAATAATAACAATTAAAATTTTAAAAAATAATAAATTAATAAATTAAACTACAGTAAGATTTCTGGGAATCATAATAGCCAACGGGACCGTTTCAAATTGTGGCATACACAATTCATTGATCATACTGTATTCACAACATCTGGAGCACATTTTGTTGGGCTCAATGTTGAAAATTCGAAATCCAAATCGAGCAATTTTTTGGAGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>351 207 85 74 52 47 46 43 34 31 18 12</canonical_bands>
                <polymorphic_bands>351 207 121 85 52 46 43 34 31 18 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTTCAGGAAAATCTAGATGAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTTGAAAATCGGTAAATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGTTTCAGGAAAATCTAGATGAGTTCGAAATTTCAAAAAATCAAAAATTAGAGAAAATTCGAGAAGCTGAGCAATTTACCTGGGTCCTCCAGGGCGCTGGGTCGATAAATTTAGTGAAAAGAATCTAATGTTTCGAACTTTTTAGAATGCTAATTTTATTTTTATAAGTTTATACATGATCGAAAAAAGACAAAATTAAAAAAATTTCATTTTAAAAAACCGAATCAAAATTTACCGATTTTCAAAT</canonical_amplicon>
		<polymorphic_amplicon>AGTTTCAGGAAAATCTAGATGAGTTCGAAATTTCAAAAAATCAAAAATTAGAGAAAATTCGAGAAGCTGAGCAATTTACCTGGGTCCTCCAGGGCGCTGGGTCGATAAATTTAGTGAAAAGAATCTAATGTTTCGAACTTTTTAGAATGCTAATTTTATTTTTATAAGTTTATACATGATCSAAAAAAGACAAAATTAAAAAAATTTCATTTTAAAAAACCGAATCAAAATTTACCGATTTTCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34256</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>719894</contig_pos>
        <strand></strand>
        <context>GACCACCGGA[G/A]GTGCRAAGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACCGGA</left_flank>
        <right_flank>GTGCAAAGGTGAGAGGGCGTATAGGTGACAAGTGGCGCCACAGGGAGAGG</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACGATGGTTATAGGTGGGTACTTTTTGAAGATACAGTAATCCAAAATTTCAAATTCCAGAAACTCATTATACTCTACTTTTGAATTACCTCTCAACTCCACAATCTACTATGCTCGTATGACTTATTATGTAAGTATTGTATCAAATGTTAAAAGTTTTTTTCTAAAAACATCTTTATTCCAGACCCACGACCCTTTAACCAACAAGATCTTGCTAGACTGGTGCTCCTTGGGGTGTCTATTCCTGCTATTCCTTTCCATTACACCTGTCTGTGTCATGTTCTATTGTGGCATTAGAACTTATAGACTAATGTCAAAAGCAACTTCTCAATTGTCAAATCATATGAAATTGCAGAAAGAATTATTCCAGGCACTTTTGATTCAGGTAATAACGTCCTAAAAAAGAATAAAAAAGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACCGGAGGTGCAAAGGTGAGAGGGCGTATAGGTGACAAGTGGCGCCACAGGGAGAGGGAGTGTGCGGCGTCACTAACATGGCGCCCCTTTATAAACGCCACCGGTGACCTACACTTCCGGCCTGCTTAGTATAGTGGTTAGTACTCCACGTTGTGGCCGTGGCGACGCTGGTTCGATTCCAGCAGCAGGCATTTGTTTTTGTTTTCTTTTTTGCTTTATATAAAAAACAAATAAATGTTACAGAGCACTGTCCCATGCATTTTTCTATTCTTCCCATCCCTTATCTACTTCATTTTCCCACTTTTCAACCTTGAACTTGGCTTATTTTCCAATATTTCTGGGATCACTTTTGTCATCTACCCTATTATTGATCCATTAGCAGTTATCTATGTTATCAAGCACTATCGTTGCTATGTTTTCAGTAAGTTTGAAGATTTTAGGGTCCAATGGGAACATAACTAAATTTTCTATATGTTTTTTTTTCAGAACTATTCTGTTTGTCGCACA</canonical>
            <polymorphic>AAACGATGGTTATAGGTGGGTACTTTTTGAAGATACAGTAATCCAAAATTTCAAATTCCAGAAACTCATTATACTCTACTTTTGAATTACCTCTCAACTCCACAATCTACTATGCTCGTATGACTTATTATGTAAGTATTGTATCAAATGTTAAAAGTTTTTTTCTAAAAACATCTTTATTCCAGACCCACGACCCTTTAACCAACAAGATCTTGCTAGACTGGTGCTCCTTGGGGTGTCTATTCCTGCTATTCCTTTCCATTACACCTGTCTGTGTCATGTTCTATTGTGGCATTAGAACTTATAGACTAATGTCAAAAGCAACTTCTCAATTGTCAAATCATATGAAATTGCAGAAAGAATTATTCCAGGCACTTTTGATTCAGGTAATAACGTCCTAAAAAAGAATAAAAAAGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACCGGARGTGCAAAGGTGAGAGGGCGTATAGGTGACAAGTGGCGCCACAGGGAGAGGGAGTGTGCGGCGTCACTAACATGGCGCCCCTTTATAAACGCCACCGGTGACCTACACTTCCGGCCTGCTTAGTATAGTGGTTAGTACTCCACGTTGTGGCCGTGGCGACGCTGGTTCGATTCCAGCAGCAGGCATTTGTTTTTGTTTTCTTTTTTGCTTTATATAAAAAACAAATAAATGTTACAGAGCACTGTCCCATGCATTTTTCTATTCTTCCCATCCCTTATCTACTTCATTTTCCCACTTTTCAACCTTGAACTTGGCTTATTTTCCAATATTTCTGGGATCACTTTTGTCATCTACCCTATTATTGATCCATTAGCAGTTATCTATGTTATCAAGCACTATCGTTGCTATGTTTTCAGTAAGTTTGAAGATTTTAGGGTCCAATGGGAACATAACTAAATTTTCTATATGTTTTTTTTTCAGAACTATTCTGTTTGTCGCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAGGTAATAACGTCCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAACGTGGAGTACTAACCACTAT</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>TTCAGGTAATAACGTCCTAAAAAAGAATAAAAAAGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACCGGAGGTGCAAAGGTGAGAGGGCGTATAGGTGACAAGTGGCGCCACAGGGAGAGGGAGTGTGCGGCGTCACTAACATGGCGCCCCTTTATAAACGCCACCGGTGACCTACACTTCCGGCCTGCTTAGTATAGTGGTTAGTACTCCACGTTG</canonical_amplicon>
		<polymorphic_amplicon>TTCAGGTAATAACGTCCTAAAAAAGAATAAAAAAGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACCGGARGTGCAAAGGTGAGAGGGCGTATAGGTGACAAGTGGCGCCACAGGGAGAGGGAGTGTGCGGCGTCACTAACATGGCGCCCCTTTATAAACGCCACCGGTGACCTACACTTCCGGCCTGCTTAGTATAGTGGTTAGTACTCCACGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34257</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>719899</contig_pos>
        <strand></strand>
        <context>CCGGARGTGC[A/G]AAGGTGAGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACCGGAGGTGC</left_flank>
        <right_flank>AAGGTGAGAGGGCGTATAGGTGACAAGTGGCGCCACAGGGAGAGGGAGTG</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGTTATAGGTGGGTACTTTTTGAAGATACAGTAATCCAAAATTTCAAATTCCAGAAACTCATTATACTCTACTTTTGAATTACCTCTCAACTCCACAATCTACTATGCTCGTATGACTTATTATGTAAGTATTGTATCAAATGTTAAAAGTTTTTTTCTAAAAACATCTTTATTCCAGACCCACGACCCTTTAACCAACAAGATCTTGCTAGACTGGTGCTCCTTGGGGTGTCTATTCCTGCTATTCCTTTCCATTACACCTGTCTGTGTCATGTTCTATTGTGGCATTAGAACTTATAGACTAATGTCAAAAGCAACTTCTCAATTGTCAAATCATATGAAATTGCAGAAAGAATTATTCCAGGCACTTTTGATTCAGGTAATAACGTCCTAAAAAAGAATAAAAAAGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACCGGAGGTGCAAAGGTGAGAGGGCGTATAGGTGACAAGTGGCGCCACAGGGAGAGGGAGTGTGCGGCGTCACTAACATGGCGCCCCTTTATAAACGCCACCGGTGACCTACACTTCCGGCCTGCTTAGTATAGTGGTTAGTACTCCACGTTGTGGCCGTGGCGACGCTGGTTCGATTCCAGCAGCAGGCATTTGTTTTTGTTTTCTTTTTTGCTTTATATAAAAAACAAATAAATGTTACAGAGCACTGTCCCATGCATTTTTCTATTCTTCCCATCCCTTATCTACTTCATTTTCCCACTTTTCAACCTTGAACTTGGCTTATTTTCCAATATTTCTGGGATCACTTTTGTCATCTACCCTATTATTGATCCATTAGCAGTTATCTATGTTATCAAGCACTATCGTTGCTATGTTTTCAGTAAGTTTGAAGATTTTAGGGTCCAATGGGAACATAACTAAATTTTCTATATGTTTTTTTTTCAGAACTATTCTGTTTGTCGCACAAAATT</canonical>
            <polymorphic>ATGGTTATAGGTGGGTACTTTTTGAAGATACAGTAATCCAAAATTTCAAATTCCAGAAACTCATTATACTCTACTTTTGAATTACCTCTCAACTCCACAATCTACTATGCTCGTATGACTTATTATGTAAGTATTGTATCAAATGTTAAAAGTTTTTTTCTAAAAACATCTTTATTCCAGACCCACGACCCTTTAACCAACAAGATCTTGCTAGACTGGTGCTCCTTGGGGTGTCTATTCCTGCTATTCCTTTCCATTACACCTGTCTGTGTCATGTTCTATTGTGGCATTAGAACTTATAGACTAATGTCAAAAGCAACTTCTCAATTGTCAAATCATATGAAATTGCAGAAAGAATTATTCCAGGCACTTTTGATTCAGGTAATAACGTCCTAAAAAAGAATAAAAAAGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACCGGAGGTGCRAAGGTGAGAGGGCGTATAGGTGACAAGTGGCGCCACAGGGAGAGGGAGTGTGCGGCGTCACTAACATGGCGCCCCTTTATAAACGCCACCGGTGACCTACACTTCCGGCCTGCTTAGTATAGTGGTTAGTACTCCACGTTGTGGCCGTGGCGACGCTGGTTCGATTCCAGCAGCAGGCATTTGTTTTTGTTTTCTTTTTTGCTTTATATAAAAAACAAATAAATGTTACAGAGCACTGTCCCATGCATTTTTCTATTCTTCCCATCCCTTATCTACTTCATTTTCCCACTTTTCAACCTTGAACTTGGCTTATTTTCCAATATTTCTGGGATCACTTTTGTCATCTACCCTATTATTGATCCATTAGCAGTTATCTATGTTATCAAGCACTATCGTTGCTATGTTTTCAGTAAGTTTGAAGATTTTAGGGTCCAATGGGAACATAACTAAATTTTCTATATGTTTTTTTTTCAGAACTATTCTGTTTGTCGCACAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>348 255 247 150</canonical_bands>
                <polymorphic_bands>397 348 255</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAGGTAATAACGTCCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAACGTGGAGTACTAACCACTAT</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>TTCAGGTAATAACGTCCTAAAAAAGAATAAAAAAGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACCGGAGGTGCAAAGGTGAGAGGGCGTATAGGTGACAAGTGGCGCCACAGGGAGAGGGAGTGTGCGGCGTCACTAACATGGCGCCCCTTTATAAACGCCACCGGTGACCTACACTTCCGGCCTGCTTAGTATAGTGGTTAGTACTCCACGTTG</canonical_amplicon>
		<polymorphic_amplicon>TTCAGGTAATAACGTCCTAAAAAAGAATAAAAAAGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACCGGAGGTGCRAAGGTGAGAGGGCGTATAGGTGACAAGTGGCGCCACAGGGAGAGGGAGTGTGCGGCGTCACTAACATGGCGCCCCTTTATAAACGCCACCGGTGACCTACACTTCCGGCCTGCTTAGTATAGTGGTTAGTACTCCACGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34258</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>719989</contig_pos>
        <strand></strand>
        <context>TAAACGCCAC[C/T]GGTGACCTAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGAGGGAGTGTGCGGCGTCACTAACATGGCGCCCCTTTATAAACGCCAC</left_flank>
        <right_flank>GGTGACCTACACTTCCGGCCTGCTTAGTATAGTGGTTAGTACTCCACGTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTCCACAATCTACTATGCTCGTATGACTTATTATGTAAGTATTGTATCAAATGTTAAAAGTTTTTTTCTAAAAACATCTTTATTCCAGACCCACGACCCTTTAACCAACAAGATCTTGCTAGACTGGTGCTCCTTGGGGTGTCTATTCCTGCTATTCCTTTCCATTACACCTGTCTGTGTCATGTTCTATTGTGGCATTAGAACTTATAGACTAATGTCAAAAGCAACTTCTCAATTGTCAAATCATATGAAATTGCAGAAAGAATTATTCCAGGCACTTTTGATTCAGGTAATAACGTCCTAAAAAAGAATAAAAAAGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACCGGAGGTGCAAAGGTGAGAGGGCGTATAGGTGACAAGTGGCGCCACAGGGAGAGGGAGTGTGCGGCGTCACTAACATGGCGCCCCTTTATAAACGCCACCGGTGACCTACACTTCCGGCCTGCTTAGTATAGTGGTTAGTACTCCACGTTGTGGCCGTGGCGACGCTGGTTCGATTCCAGCAGCAGGCATTTGTTTTTGTTTTCTTTTTTGCTTTATATAAAAAACAAATAAATGTTACAGAGCACTGTCCCATGCATTTTTCTATTCTTCCCATCCCTTATCTACTTCATTTTCCCACTTTTCAACCTTGAACTTGGCTTATTTTCCAATATTTCTGGGATCACTTTTGTCATCTACCCTATTATTGATCCATTAGCAGTTATCTATGTTATCAAGCACTATCGTTGCTATGTTTTCAGTAAGTTTGAAGATTTTAGGGTCCAATGGGAACATAACTAAATTTTCTATATGTTTTTTTTTCAGAACTATTCTGTTTGTCGCACAAAATTACGCCAAAACTTCAGCGAGATGTGTGCATTGATGTGGCGGAAGACGAGGCGAGAGGGAATAACAATACTAATAATAATTTGGAGATGTTT</canonical>
            <polymorphic>AACTCCACAATCTACTATGCTCGTATGACTTATTATGTAAGTATTGTATCAAATGTTAAAAGTTTTTTTCTAAAAACATCTTTATTCCAGACCCACGACCCTTTAACCAACAAGATCTTGCTAGACTGGTGCTCCTTGGGGTGTCTATTCCTGCTATTCCTTTCCATTACACCTGTCTGTGTCATGTTCTATTGTGGCATTAGAACTTATAGACTAATGTCAAAAGCAACTTCTCAATTGTCAAATCATATGAAATTGCAGAAAGAATTATTCCAGGCACTTTTGATTCAGGTAATAACGTCCTAAAAAAGAATAAAAAAGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACCGGAGGTGCAAAGGTGAGAGGGCGTATAGGTGACAAGTGGCGCCACAGGGAGAGGGAGTGTGCGGCGTCACTAACATGGCGCCCCTTTATAAACGCCACYGGTGACCTACACTTCCGGCCTGCTTAGTATAGTGGTTAGTACTCCACGTTGTGGCCGTGGCGACGCTGGTTCGATTCCAGCAGCAGGCATTTGTTTTTGTTTTCTTTTTTGCTTTATATAAAAAACAAATAAATGTTACAGAGCACTGTCCCATGCATTTTTCTATTCTTCCCATCCCTTATCTACTTCATTTTCCCACTTTTCAACCTTGAACTTGGCTTATTTTCCAATATTTCTGGGATCACTTTTGTCATCTACCCTATTATTGATCCATTAGCAGTTATCTATGTTATCAAGCACTATCGTTGCTATGTTTTCAGTAAGTTTGAAGATTTTAGGGTCCAATGGGAACATAACTAAATTTTCTATATGTTTTTTTTTCAGAACTATTCTGTTTGTCGCACAAAATTACGCCAAAACTTCAGCGAGATGTGTGCATTGATGTGGCGGAAGACGAGGCGAGAGGGAATAACAATACTAATAATAATTTGGAGATGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACCGGT</site>
                <isoschizomers>
                    <enzyme>AgeI</enzyme>
                    <enzyme>AsiAI</enzyme>
                    <enzyme>BshTI</enzyme>
                    <enzyme>CspAI</enzyme>
                    <enzyme>PinAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>502 399 99</canonical_bands>
                <polymorphic_bands>601 399</polymorphic_bands>
            </assay>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>485 400 99 16</canonical_bands>
                <polymorphic_bands>485 400 115</polymorphic_bands>
            </assay>
            <assay>
                <site>CRCCGGYG</site>
                <isoschizomers>
                    <enzyme>SgrAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGGCGTATAGGTGACAAGT</pcr_primer_p1>
		<pcr_primer_p2>ATAGAAAAATGCATGGGACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGGGCGTATAGGTGACAAGTGGCGCCACAGGGAGAGGGAGTGTGCGGCGTCACTAACATGGCGCCCCTTTATAAACGCCACCGGTGACCTACACTTCCGGCCTGCTTAGTATAGTGGTTAGTACTCCACGTTGTGGCCGTGGCGACGCTGGTTCGATTCCAGCAGCAGGCATTTGTTTTTGTTTTCTTTTTTGCTTTATATAAAAAACAAATAAATGTTACAGAGCACTGTCCCATGCATTTTTCTAT</canonical_amplicon>
		<polymorphic_amplicon>AGGGCGTATAGGTGACAAGTGGCGCCACAGGGAGAGGGAGTGTGCGGCGTCACTAACATGGCGCCCCTTTATAAACGCCACYGGTGACCTACACTTCCGGCCTGCTTAGTATAGTGGTTAGTACTCCACGTTGTGGCCGTGGCGACGCTGGTTCGATTCCAGCAGCAGGCATTTGTTTTTGTTTTCTTTTTTGCTTTATATAAAAAACAAATAAATGTTACAGAGCACTGTCCCATGCATTTTTCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34259</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>720001</contig_pos>
        <strand></strand>
        <context>GTGACCTACA[C/G]TTYCGGCCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCGGCGTCACTAACATGGCGCCCCTTTATAAACGCCACCGGTGACCTACA</left_flank>
        <right_flank>TTCCGGCCTGCTTAGTATAGTGGTTAGTACTCCACGTTGTGGCCGTGGCG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTATGCTCGTATGACTTATTATGTAAGTATTGTATCAAATGTTAAAAGTTTTTTTCTAAAAACATCTTTATTCCAGACCCACGACCCTTTAACCAACAAGATCTTGCTAGACTGGTGCTCCTTGGGGTGTCTATTCCTGCTATTCCTTTCCATTACACCTGTCTGTGTCATGTTCTATTGTGGCATTAGAACTTATAGACTAATGTCAAAAGCAACTTCTCAATTGTCAAATCATATGAAATTGCAGAAAGAATTATTCCAGGCACTTTTGATTCAGGTAATAACGTCCTAAAAAAGAATAAAAAAGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACCGGAGGTGCAAAGGTGAGAGGGCGTATAGGTGACAAGTGGCGCCACAGGGAGAGGGAGTGTGCGGCGTCACTAACATGGCGCCCCTTTATAAACGCCACCGGTGACCTACACTTCCGGCCTGCTTAGTATAGTGGTTAGTACTCCACGTTGTGGCCGTGGCGACGCTGGTTCGATTCCAGCAGCAGGCATTTGTTTTTGTTTTCTTTTTTGCTTTATATAAAAAACAAATAAATGTTACAGAGCACTGTCCCATGCATTTTTCTATTCTTCCCATCCCTTATCTACTTCATTTTCCCACTTTTCAACCTTGAACTTGGCTTATTTTCCAATATTTCTGGGATCACTTTTGTCATCTACCCTATTATTGATCCATTAGCAGTTATCTATGTTATCAAGCACTATCGTTGCTATGTTTTCAGTAAGTTTGAAGATTTTAGGGTCCAATGGGAACATAACTAAATTTTCTATATGTTTTTTTTTCAGAACTATTCTGTTTGTCGCACAAAATTACGCCAAAACTTCAGCGAGATGTGTGCATTGATGTGGCGGAAGACGAGGCGAGAGGGAATAACAATACTAATAATAATTTGGAGATGTTTATGTCGTTCAAC</canonical>
            <polymorphic>TACTATGCTCGTATGACTTATTATGTAAGTATTGTATCAAATGTTAAAAGTTTTTTTCTAAAAACATCTTTATTCCAGACCCACGACCCTTTAACCAACAAGATCTTGCTAGACTGGTGCTCCTTGGGGTGTCTATTCCTGCTATTCCTTTCCATTACACCTGTCTGTGTCATGTTCTATTGTGGCATTAGAACTTATAGACTAATGTCAAAAGCAACTTCTCAATTGTCAAATCATATGAAATTGCAGAAAGAATTATTCCAGGCACTTTTGATTCAGGTAATAACGTCCTAAAAAAGAATAAAAAAGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACCGGAGGTGCAAAGGTGAGAGGGCGTATAGGTGACAAGTGGCGCCACAGGGAGAGGGAGTGTGCGGCGTCACTAACATGGCGCCCCTTTATAAACGCCACCGGTGACCTACASTTCCGGCCTGCTTAGTATAGTGGTTAGTACTCCACGTTGTGGCCGTGGCGACGCTGGTTCGATTCCAGCAGCAGGCATTTGTTTTTGTTTTCTTTTTTGCTTTATATAAAAAACAAATAAATGTTACAGAGCACTGTCCCATGCATTTTTCTATTCTTCCCATCCCTTATCTACTTCATTTTCCCACTTTTCAACCTTGAACTTGGCTTATTTTCCAATATTTCTGGGATCACTTTTGTCATCTACCCTATTATTGATCCATTAGCAGTTATCTATGTTATCAAGCACTATCGTTGCTATGTTTTCAGTAAGTTTGAAGATTTTAGGGTCCAATGGGAACATAACTAAATTTTCTATATGTTTTTTTTTCAGAACTATTCTGTTTGTCGCACAAAATTACGCCAAAACTTCAGCGAGATGTGTGCATTGATGTGGCGGAAGACGAGGCGAGAGGGAATAACAATACTAATAATAATTTGGAGATGTTTATGTCGTTCAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>104 86 83 83 69 66 55 53 46 36 31 28 28 23 16 15 15 13 13 12 12 10 10 9 8 8 8 7 7 7 7 6 6 6 5 3 2 2 2</canonical_bands>
                <polymorphic_bands>104 86 83 83 69 66 55 53 46 36 31 30 28 28 16 15 15 13 13 12 12 10 10 9 8 8 8 7 7 7 6 6 6 5 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGGCGTATAGGTGACAAGT</pcr_primer_p1>
		<pcr_primer_p2>ATAGAAAAATGCATGGGACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGGGCGTATAGGTGACAAGTGGCGCCACAGGGAGAGGGAGTGTGCGGCGTCACTAACATGGCGCCCCTTTATAAACGCCACCGGTGACCTACACTTCCGGCCTGCTTAGTATAGTGGTTAGTACTCCACGTTGTGGCCGTGGCGACGCTGGTTCGATTCCAGCAGCAGGCATTTGTTTTTGTTTTCTTTTTTGCTTTATATAAAAAACAAATAAATGTTACAGAGCACTGTCCCATGCATTTTTCTAT</canonical_amplicon>
		<polymorphic_amplicon>AGGGCGTATAGGTGACAAGTGGCGCCACAGGGAGAGGGAGTGTGCGGCGTCACTAACATGGCGCCCCTTTATAAACGCCACCGGTGACCTACASTTCCGGCCTGCTTAGTATAGTGGTTAGTACTCCACGTTGTGGCCGTGGCGACGCTGGTTCGATTCCAGCAGCAGGCATTTGTTTTTGTTTTCTTTTTTGCTTTATATAAAAAACAAATAAATGTTACAGAGCACTGTCCCATGCATTTTTCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34260</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>720004</contig_pos>
        <strand></strand>
        <context>ACCTACASTT[C/T]CGGCCTGCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCGTCACTAACATGGCGCCCCTTTATAAACGCCACCGGTGACCTACACTT</left_flank>
        <right_flank>CGGCCTGCTTAGTATAGTGGTTAGTACTCCACGTTGTGGCCGTGGCGACG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGCTCGTATGACTTATTATGTAAGTATTGTATCAAATGTTAAAAGTTTTTTTCTAAAAACATCTTTATTCCAGACCCACGACCCTTTAACCAACAAGATCTTGCTAGACTGGTGCTCCTTGGGGTGTCTATTCCTGCTATTCCTTTCCATTACACCTGTCTGTGTCATGTTCTATTGTGGCATTAGAACTTATAGACTAATGTCAAAAGCAACTTCTCAATTGTCAAATCATATGAAATTGCAGAAAGAATTATTCCAGGCACTTTTGATTCAGGTAATAACGTCCTAAAAAAGAATAAAAAAGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACCGGAGGTGCAAAGGTGAGAGGGCGTATAGGTGACAAGTGGCGCCACAGGGAGAGGGAGTGTGCGGCGTCACTAACATGGCGCCCCTTTATAAACGCCACCGGTGACCTACACTTCCGGCCTGCTTAGTATAGTGGTTAGTACTCCACGTTGTGGCCGTGGCGACGCTGGTTCGATTCCAGCAGCAGGCATTTGTTTTTGTTTTCTTTTTTGCTTTATATAAAAAACAAATAAATGTTACAGAGCACTGTCCCATGCATTTTTCTATTCTTCCCATCCCTTATCTACTTCATTTTCCCACTTTTCAACCTTGAACTTGGCTTATTTTCCAATATTTCTGGGATCACTTTTGTCATCTACCCTATTATTGATCCATTAGCAGTTATCTATGTTATCAAGCACTATCGTTGCTATGTTTTCAGTAAGTTTGAAGATTTTAGGGTCCAATGGGAACATAACTAAATTTTCTATATGTTTTTTTTTCAGAACTATTCTGTTTGTCGCACAAAATTACGCCAAAACTTCAGCGAGATGTGTGCATTGATGTGGCGGAAGACGAGGCGAGAGGGAATAACAATACTAATAATAATTTGGAGATGTTTATGTCGTTCAACAGC</canonical>
            <polymorphic>TATGCTCGTATGACTTATTATGTAAGTATTGTATCAAATGTTAAAAGTTTTTTTCTAAAAACATCTTTATTCCAGACCCACGACCCTTTAACCAACAAGATCTTGCTAGACTGGTGCTCCTTGGGGTGTCTATTCCTGCTATTCCTTTCCATTACACCTGTCTGTGTCATGTTCTATTGTGGCATTAGAACTTATAGACTAATGTCAAAAGCAACTTCTCAATTGTCAAATCATATGAAATTGCAGAAAGAATTATTCCAGGCACTTTTGATTCAGGTAATAACGTCCTAAAAAAGAATAAAAAAGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACCGGAGGTGCAAAGGTGAGAGGGCGTATAGGTGACAAGTGGCGCCACAGGGAGAGGGAGTGTGCGGCGTCACTAACATGGCGCCCCTTTATAAACGCCACCGGTGACCTACACTTYCGGCCTGCTTAGTATAGTGGTTAGTACTCCACGTTGTGGCCGTGGCGACGCTGGTTCGATTCCAGCAGCAGGCATTTGTTTTTGTTTTCTTTTTTGCTTTATATAAAAAACAAATAAATGTTACAGAGCACTGTCCCATGCATTTTTCTATTCTTCCCATCCCTTATCTACTTCATTTTCCCACTTTTCAACCTTGAACTTGGCTTATTTTCCAATATTTCTGGGATCACTTTTGTCATCTACCCTATTATTGATCCATTAGCAGTTATCTATGTTATCAAGCACTATCGTTGCTATGTTTTCAGTAAGTTTGAAGATTTTAGGGTCCAATGGGAACATAACTAAATTTTCTATATGTTTTTTTTTCAGAACTATTCTGTTTGTCGCACAAAATTACGCCAAAACTTCAGCGAGATGTGTGCATTGATGTGGCGGAAGACGAGGCGAGAGGGAATAACAATACTAATAATAATTTGGAGATGTTTATGTCGTTCAACAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 385 99 16</canonical_bands>
                <polymorphic_bands>516 385 99</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGGCGTATAGGTGACAAGT</pcr_primer_p1>
		<pcr_primer_p2>ATAGAAAAATGCATGGGACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGGGCGTATAGGTGACAAGTGGCGCCACAGGGAGAGGGAGTGTGCGGCGTCACTAACATGGCGCCCCTTTATAAACGCCACCGGTGACCTACACTTCCGGCCTGCTTAGTATAGTGGTTAGTACTCCACGTTGTGGCCGTGGCGACGCTGGTTCGATTCCAGCAGCAGGCATTTGTTTTTGTTTTCTTTTTTGCTTTATATAAAAAACAAATAAATGTTACAGAGCACTGTCCCATGCATTTTTCTAT</canonical_amplicon>
		<polymorphic_amplicon>AGGGCGTATAGGTGACAAGTGGCGCCACAGGGAGAGGGAGTGTGCGGCGTCACTAACATGGCGCCCCTTTATAAACGCCACCGGTGACCTACACTTYCGGCCTGCTTAGTATAGTGGTTAGTACTCCACGTTGTGGCCGTGGCGACGCTGGTTCGATTCCAGCAGCAGGCATTTGTTTTTGTTTTCTTTTTTGCTTTATATAAAAAACAAATAAATGTTACAGAGCACTGTCCCATGCATTTTTCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34261</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>720086</contig_pos>
        <strand></strand>
        <context>GCATTTGTTT[T/G]TGTTTTCTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CGTTGTGGCCGTGGCGACGCTGGTTCGATTCCAGCAGCAGGCATTTGTTT</left_flank>
        <right_flank>TGTTTTCTTTTTTGCTTTATATAAAAAACAAATAAATGTTACAGAGCACT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCCTTTAACCAACAAGATCTTGCTAGACTGGTGCTCCTTGGGGTGTCTATTCCTGCTATTCCTTTCCATTACACCTGTCTGTGTCATGTTCTATTGTGGCATTAGAACTTATAGACTAATGTCAAAAGCAACTTCTCAATTGTCAAATCATATGAAATTGCAGAAAGAATTATTCCAGGCACTTTTGATTCAGGTAATAACGTCCTAAAAAAGAATAAAAAAGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACCGGAGGTGCAAAGGTGAGAGGGCGTATAGGTGACAAGTGGCGCCACAGGGAGAGGGAGTGTGCGGCGTCACTAACATGGCGCCCCTTTATAAACGCCACCGGTGACCTACACTTCCGGCCTGCTTAGTATAGTGGTTAGTACTCCACGTTGTGGCCGTGGCGACGCTGGTTCGATTCCAGCAGCAGGCATTTGTTTTTGTTTTCTTTTTTGCTTTATATAAAAAACAAATAAATGTTACAGAGCACTGTCCCATGCATTTTTCTATTCTTCCCATCCCTTATCTACTTCATTTTCCCACTTTTCAACCTTGAACTTGGCTTATTTTCCAATATTTCTGGGATCACTTTTGTCATCTACCCTATTATTGATCCATTAGCAGTTATCTATGTTATCAAGCACTATCGTTGCTATGTTTTCAGTAAGTTTGAAGATTTTAGGGTCCAATGGGAACATAACTAAATTTTCTATATGTTTTTTTTTCAGAACTATTCTGTTTGTCGCACAAAATTACGCCAAAACTTCAGCGAGATGTGTGCATTGATGTGGCGGAAGACGAGGCGAGAGGGAATAACAATACTAATAATAATTTGGAGATGTTTATGTCGTTCAACAGCATTTCTCATGAATGAAGATCTATTTTGAGTCTATTTTTTAGCGGAAATGAACCCAATAATGTGGTTTTTAGTTCTAAAAATC</canonical>
            <polymorphic>ACCCTTTAACCAACAAGATCTTGCTAGACTGGTGCTCCTTGGGGTGTCTATTCCTGCTATTCCTTTCCATTACACCTGTCTGTGTCATGTTCTATTGTGGCATTAGAACTTATAGACTAATGTCAAAAGCAACTTCTCAATTGTCAAATCATATGAAATTGCAGAAAGAATTATTCCAGGCACTTTTGATTCAGGTAATAACGTCCTAAAAAAGAATAAAAAAGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACCGGAGGTGCAAAGGTGAGAGGGCGTATAGGTGACAAGTGGCGCCACAGGGAGAGGGAGTGTGCGGCGTCACTAACATGGCGCCCCTTTATAAACGCCACCGGTGACCTACACTTCCGGCCTGCTTAGTATAGTGGTTAGTACTCCACGTTGTGGCCGTGGCGACGCTGGTTCGATTCCAGCAGCAGGCATTTGTTTKTGTTTTCTTTTTTGCTTTATATAAAAAACAAATAAATGTTACAGAGCACTGTCCCATGCATTTTTCTATTCTTCCCATCCCTTATCTACTTCATTTTCCCACTTTTCAACCTTGAACTTGGCTTATTTTCCAATATTTCTGGGATCACTTTTGTCATCTACCCTATTATTGATCCATTAGCAGTTATCTATGTTATCAAGCACTATCGTTGCTATGTTTTCAGTAAGTTTGAAGATTTTAGGGTCCAATGGGAACATAACTAAATTTTCTATATGTTTTTTTTTCAGAACTATTCTGTTTGTCGCACAAAATTACGCCAAAACTTCAGCGAGATGTGTGCATTGATGTGGCGGAAGACGAGGCGAGAGGGAATAACAATACTAATAATAATTTGGAGATGTTTATGTCGTTCAACAGCATTTCTCATGAATGAAGATCTATTTTGAGTCTATTTTTTAGCGGAAATGAACCCAATAATGTGGTTTTTAGTTCTAAAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTGGTTAGTACTCCACGTTGT</pcr_primer_p1>
		<pcr_primer_p2>GCTAATGGATCAATAATAGGGTAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAGTGGTTAGTACTCCACGTTGTGGCCGTGGCGACGCTGGTTCGATTCCAGCAGCAGGCATTTGTTTTTGTTTTCTTTTTTGCTTTATATAAAAAACAAATAAATGTTACAGAGCACTGTCCCATGCATTTTTCTATTCTTCCCATCCCTTATCTACTTCATTTTCCCACTTTTCAACCTTGAACTTGGCTTATTTTCCAATATTTCTGGGATCACTTTTGTCATCTACCCTATTATTGATCCATTAGC</canonical_amplicon>
		<polymorphic_amplicon>TAGTGGTTAGTACTCCACGTTGTGGCCGTGGCGACGCTGGTTCGATTCCAGCAGCAGGCATTTGTTTKTGTTTTCTTTTTTGCTTTATATAAAAAACAAATAAATGTTACAGAGCACTGTCCCATGCATTTTTCTATTCTTCCCATCCCTTATCTACTTCATTTTCCCACTTTTCAACCTTGAACTTGGCTTATTTTCCAATATTTCTGGGATCACTTTTGTCATCTACCCTATTATTGATCCATTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34262</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>720127</contig_pos>
        <strand></strand>
        <context>AATAAATGTT[A/C]CAGAGCACTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATTTGTTTTTGTTTTCTTTTTTGCTTTATATAAAAAACAAATAAATGTT</left_flank>
        <right_flank>CAGAGCACTGTCCCATGCATTTTTCTATTCTTCCCATCCCTTATCTACTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGTGTCTATTCCTGCTATTCCTTTCCATTACACCTGTCTGTGTCATGTTCTATTGTGGCATTAGAACTTATAGACTAATGTCAAAAGCAACTTCTCAATTGTCAAATCATATGAAATTGCAGAAAGAATTATTCCAGGCACTTTTGATTCAGGTAATAACGTCCTAAAAAAGAATAAAAAAGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACCGGAGGTGCAAAGGTGAGAGGGCGTATAGGTGACAAGTGGCGCCACAGGGAGAGGGAGTGTGCGGCGTCACTAACATGGCGCCCCTTTATAAACGCCACCGGTGACCTACACTTCCGGCCTGCTTAGTATAGTGGTTAGTACTCCACGTTGTGGCCGTGGCGACGCTGGTTCGATTCCAGCAGCAGGCATTTGTTTTTGTTTTCTTTTTTGCTTTATATAAAAAACAAATAAATGTTACAGAGCACTGTCCCATGCATTTTTCTATTCTTCCCATCCCTTATCTACTTCATTTTCCCACTTTTCAACCTTGAACTTGGCTTATTTTCCAATATTTCTGGGATCACTTTTGTCATCTACCCTATTATTGATCCATTAGCAGTTATCTATGTTATCAAGCACTATCGTTGCTATGTTTTCAGTAAGTTTGAAGATTTTAGGGTCCAATGGGAACATAACTAAATTTTCTATATGTTTTTTTTTCAGAACTATTCTGTTTGTCGCACAAAATTACGCCAAAACTTCAGCGAGATGTGTGCATTGATGTGGCGGAAGACGAGGCGAGAGGGAATAACAATACTAATAATAATTTGGAGATGTTTATGTCGTTCAACAGCATTTCTCATGAATGAAGATCTATTTTGAGTCTATTTTTTAGCGGAAATGAACCCAATAATGTGGTTTTTAGTTCTAAAAATCTCAATAGCAGTCTAAAAAATTATAGTCAAACGAAAAAAATC</canonical>
            <polymorphic>GGGTGTCTATTCCTGCTATTCCTTTCCATTACACCTGTCTGTGTCATGTTCTATTGTGGCATTAGAACTTATAGACTAATGTCAAAAGCAACTTCTCAATTGTCAAATCATATGAAATTGCAGAAAGAATTATTCCAGGCACTTTTGATTCAGGTAATAACGTCCTAAAAAAGAATAAAAAAGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACCGGAGGTGCAAAGGTGAGAGGGCGTATAGGTGACAAGTGGCGCCACAGGGAGAGGGAGTGTGCGGCGTCACTAACATGGCGCCCCTTTATAAACGCCACCGGTGACCTACACTTCCGGCCTGCTTAGTATAGTGGTTAGTACTCCACGTTGTGGCCGTGGCGACGCTGGTTCGATTCCAGCAGCAGGCATTTGTTTTTGTTTTCTTTTTTGCTTTATATAAAAAACAAATAAATGTTMCAGAGCACTGTCCCATGCATTTTTCTATTCTTCCCATCCCTTATCTACTTCATTTTCCCACTTTTCAACCTTGAACTTGGCTTATTTTCCAATATTTCTGGGATCACTTTTGTCATCTACCCTATTATTGATCCATTAGCAGTTATCTATGTTATCAAGCACTATCGTTGCTATGTTTTCAGTAAGTTTGAAGATTTTAGGGTCCAATGGGAACATAACTAAATTTTCTATATGTTTTTTTTTCAGAACTATTCTGTTTGTCGCACAAAATTACGCCAAAACTTCAGCGAGATGTGTGCATTGATGTGGCGGAAGACGAGGCGAGAGGGAATAACAATACTAATAATAATTTGGAGATGTTTATGTCGTTCAACAGCATTTCTCATGAATGAAGATCTATTTTGAGTCTATTTTTTAGCGGAAATGAACCCAATAATGTGGTTTTTAGTTCTAAAAATCTCAATAGCAGTCTAAAAAATTATAGTCAAACGAAAAAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 291 133 37 35</canonical_bands>
                <polymorphic_bands>637 291 37 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGTGGTTAGTACTCCACGTTGT</pcr_primer_p1>
		<pcr_primer_p2>GCTAATGGATCAATAATAGGGTAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAGTGGTTAGTACTCCACGTTGTGGCCGTGGCGACGCTGGTTCGATTCCAGCAGCAGGCATTTGTTTTTGTTTTCTTTTTTGCTTTATATAAAAAACAAATAAATGTTACAGAGCACTGTCCCATGCATTTTTCTATTCTTCCCATCCCTTATCTACTTCATTTTCCCACTTTTCAACCTTGAACTTGGCTTATTTTCCAATATTTCTGGGATCACTTTTGTCATCTACCCTATTATTGATCCATTAGC</canonical_amplicon>
		<polymorphic_amplicon>TAGTGGTTAGTACTCCACGTTGTGGCCGTGGCGACGCTGGTTCGATTCCAGCAGCAGGCATTTGTTTTTGTTTTCTTTTTTGCTTTATATAAAAAACAAATAAATGTTMCAGAGCACTGTCCCATGCATTTTTCTATTCTTCCCATCCCTTATCTACTTCATTTTCCCACTTTTCAACCTTGAACTTGGCTTATTTTCCAATATTTCTGGGATCACTTTTGTCATCTACCCTATTATTGATCCATTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34263</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>720241</contig_pos>
        <strand></strand>
        <context>TCACTTTTGT[C/G]ATCTACCCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCAACCTTGAACTTGGCTTATTTTCCAATATTTCTGGGATCACTTTTGT</left_flank>
        <right_flank>ATCTACCCTATTATTGATCCATTAGCAGTTATCTATGTTATCAAGCACTA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTGCAGAAAGAATTATTCCAGGCACTTTTGATTCAGGTAATAACGTCCTAAAAAAGAATAAAAAAGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACCGGAGGTGCAAAGGTGAGAGGGCGTATAGGTGACAAGTGGCGCCACAGGGAGAGGGAGTGTGCGGCGTCACTAACATGGCGCCCCTTTATAAACGCCACCGGTGACCTACACTTCCGGCCTGCTTAGTATAGTGGTTAGTACTCCACGTTGTGGCCGTGGCGACGCTGGTTCGATTCCAGCAGCAGGCATTTGTTTTTGTTTTCTTTTTTGCTTTATATAAAAAACAAATAAATGTTACAGAGCACTGTCCCATGCATTTTTCTATTCTTCCCATCCCTTATCTACTTCATTTTCCCACTTTTCAACCTTGAACTTGGCTTATTTTCCAATATTTCTGGGATCACTTTTGTCATCTACCCTATTATTGATCCATTAGCAGTTATCTATGTTATCAAGCACTATCGTTGCTATGTTTTCAGTAAGTTTGAAGATTTTAGGGTCCAATGGGAACATAACTAAATTTTCTATATGTTTTTTTTTCAGAACTATTCTGTTTGTCGCACAAAATTACGCCAAAACTTCAGCGAGATGTGTGCATTGATGTGGCGGAAGACGAGGCGAGAGGGAATAACAATACTAATAATAATTTGGAGATGTTTATGTCGTTCAACAGCATTTCTCATGAATGAAGATCTATTTTGAGTCTATTTTTTAGCGGAAATGAACCCAATAATGTGGTTTTTAGTTCTAAAAATCTCAATAGCAGTCTAAAAAATTATAGTCAAACGAAAAAAATCACATAATTGCACAATAAAAAGAAGAAAAAAGGAAAACAAAAACAAATGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACGTGGACACAGGTAGAGGGGGACTGCT</canonical>
            <polymorphic>AAATTGCAGAAAGAATTATTCCAGGCACTTTTGATTCAGGTAATAACGTCCTAAAAAAGAATAAAAAAGAAACTGATCTCGGGCGGGCTCGAACCACCGACCTTCTGTGTGTTAGACAGATGTGATAACCACTACACCACGAGACCACCGGAGGTGCAAAGGTGAGAGGGCGTATAGGTGACAAGTGGCGCCACAGGGAGAGGGAGTGTGCGGCGTCACTAACATGGCGCCCCTTTATAAACGCCACCGGTGACCTACACTTCCGGCCTGCTTAGTATAGTGGTTAGTACTCCACGTTGTGGCCGTGGCGACGCTGGTTCGATTCCAGCAGCAGGCATTTGTTTTTGTTTTCTTTTTTGCTTTATATAAAAAACAAATAAATGTTACAGAGCACTGTCCCATGCATTTTTCTATTCTTCCCATCCCTTATCTACTTCATTTTCCCACTTTTCAACCTTGAACTTGGCTTATTTTCCAATATTTCTGGGATCACTTTTGTSATCTACCCTATTATTGATCCATTAGCAGTTATCTATGTTATCAAGCACTATCGTTGCTATGTTTTCAGTAAGTTTGAAGATTTTAGGGTCCAATGGGAACATAACTAAATTTTCTATATGTTTTTTTTTCAGAACTATTCTGTTTGTCGCACAAAATTACGCCAAAACTTCAGCGAGATGTGTGCATTGATGTGGCGGAAGACGAGGCGAGAGGGAATAACAATACTAATAATAATTTGGAGATGTTTATGTCGTTCAACAGCATTTCTCATGAATGAAGATCTATTTTGAGTCTATTTTTTAGCGGAAATGAACCCAATAATGTGGTTTTTAGTTCTAAAAATCTCAATAGCAGTCTAAAAAATTATAGTCAAACGAAAAAAATCACATAATTGCACAATAAAAAGAAGAAAAAAGGAAAACAAAAACAAATGCCTGCTGCTGGAATCGAACCAGCGTCGCCACGGCCACAACGTGGACACAGGTAGAGGGGGACTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATCCCTTATCTACTTCATTTT</pcr_primer_p1>
		<pcr_primer_p2>AGTTTTGGCGTAATTTTGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCATCCCTTATCTACTTCATTTTCCCACTTTTCAACCTTGAACTTGGCTTATTTTCCAATATTTCTGGGATCACTTTTGTCATCTACCCTATTATTGATCCATTAGCAGTTATCTATGTTATCAAGCACTATCGTTGCTATGTTTTCAGTAAGTTTGAAGATTTTAGGGTCCAATGGGAACATAACTAAATTTTCTATATGTTTTTTTTTCAGAACTATTCTGTTTGTCGCACAAAATTACGCCAAAACT</canonical_amplicon>
		<polymorphic_amplicon>CCATCCCTTATCTACTTCATTTTCCCACTTTTCAACCTTGAACTTGGCTTATTTTCCAATATTTCTGGGATCACTTTTGTSATCTACCCTATTATTGATCCATTAGCAGTTATCTATGTTATCAAGCACTATCGTTGCTATGTTTTCAGTAAGTTTGAAGATTTTAGGGTCCAATGGGAACATAACTAAATTTTCTATATGTTTTTTTTTCAGAACTATTCTGTTTGTCGCACAAAATTACGCCAAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34264</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>742284</contig_pos>
        <strand></strand>
        <context>CAAGAGTACA[A/T]ATCATATGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTGGTTAAGGGAAACTTAATAAACTATTTGAAACAGTCCAAGAGTACA</left_flank>
        <right_flank>ATCATATGTCCCCTTTTAAAACGCCACCGTATACTTGCGCTTTGACCTCA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCCAGAAACTTCTTTCACTTCCGGATGAGCAATACAGTATACACTTGTCGCTGCTCCTTGACTCGAATTCTTTGTGAATGGAGTTGATATAACCCCAAAGACTTTGGATACTGCAGAATCTCTATGAAGGTCCGTACGTACTCCAGAGCCAGGATGTACTGAATAAGTACTGATTCCGTTGGAAAATTCGTTCCGGTGAATTTTAAATGCTGTGAGCATGTTGCACATTTTTGAGCTGTTGTACAGATAGAGATACATTTTAGAGGCATCTTTTGGACAGAGGATTTCTAGTTTTTTATCAATCGGTTGGTCGGATTTGACACATGAACGATTTGCCAATGCAGAAGAGACAATGACCAAACGAGAAGGTGCAGACGAGCGGAGAACTGGCAGAAGATATTGGAGGAGCTGAAAATTATTTATCAGGCAGAACCACGAATTTTCTCTTTTGGTTAAGGGAAACTTAATAAACTATTTGAAACAGTCCAAGAGTACAAATCATATGTCCCCTTTTAAAACGCCACCGTATACTTGCGCTTTGACCTCAATTATCTCAACAACTCCACTACAGCAAGAAATATCAACTTAAAATGTTAGTGATATCTTGACACACATTTTATCAGTTGACAATTTTCCGATATCTCTTAAAGGAATCGAGATAATTGAGCTCAAAACGGATGTAGTTATGATGTTTGAATTGTTCCCATATTAAATAACTTGGTGAATTAACAACAAATGATAACAGTTAAATAAAACAGAAAAAAAAGTTTGAAAAGTTTACCATAAAATGAGCAAGATGATTAATTCCAAAATGTGCCTCAAATCCGTCGGATGTCATTTTTGTCGAGGGTCCCATGACTCCAGCATTTAGGATTAGTCCGTGAAGGGGCCTGGAACCAGACAAGTAAGTAAGTTGATCTTTGAGCCAATTTTTCTTGGTTTCTTTAAAAGGTATTAAAAAGTGGTAAACTGATAAAATATTTGTGATAGTGTTATG</canonical>
            <polymorphic>TCTTCCAGAAACTTCTTTCACTTCCGGATGAGCAATACAGTATACACTTGTCGCTGCTCCTTGACTCGAATTCTTTGTGAATGGAGTTGATATAACCCCAAAGACTTTGGATACTGCAGAATCTCTATGAAGGTCCGTACGTACTCCAGAGCCAGGATGTACTGAATAAGTACTGATTCCGTTGGAAAATTCGTTCCGGTGAATTTTAAATGCTGTGAGCATGTTGCACATTTTTGAGCTGTTGTACAGATAGAGATACATTTTAGAGGCATCTTTTGGACAGAGGATTTCTAGTTTTTTATCAATCGGTTGGTCGGATTTGACACATGAACGATTTGCCAATGCAGAAGAGACAATGACCAAACGAGAAGGTGCAGACGAGCGGAGAACTGGCAGAAGATATTGGAGGAGCTGAAAATTATTTATCAGGCAGAACCACGAATTTTCTCTTTTGGTTAAGGGAAACTTAATAAACTATTTGAAACAGTCCAAGAGTACAWATCATATGTCCCCTTTTAAAACGCCACCGTATACTTGCGCTTTGACCTCAATTATCTCAACAACTCCACTACAGCAAGAAATATCAACTTAAAATGTTAGTGATATCTTGACACACATTTTATCAGTTGACAATTTTCCGATATCTCTTAAAGGAATCGAGATAATTGAGCTCAAAACGGATGTAGTTATGATGTTTGAATTGTTCCCATATTAAATAACTTGGTGAATTAACAACAAATGATAACAGTTAAATAAAACAGAAAAAAAAGTTTGAAAAGTTTACCATAAAATGAGCAAGATGATTAATTCCAAAATGTGCCTCAAATCCGTCGGATGTCATTTTTGTCGAGGGTCCCATGACTCCAGCATTTAGGATTAGTCCGTGAAGGGGCCTGGAACCAGACAAGTAAGTAAGTTGATCTTTGAGCCAATTTTTCTTGGTTTCTTTAAAAGGTATTAAAAAGTGGTAAACTGATAAAATATTTGTGATAGTGTTATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGACACATGAACGATTTG</pcr_primer_p1>
		<pcr_primer_p2>AGTGGAGTTGTTGAGATAATTGA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTGACACATGAACGATTTGCCAATGCAGAAGAGACAATGACCAAACGAGAAGGTGCAGACGAGCGGAGAACTGGCAGAAGATATTGGAGGAGCTGAAAATTATTTATCAGGCAGAACCACGAATTTTCTCTTTTGGTTAAGGGAAACTTAATAAACTATTTGAAACAGTCCAAGAGTACAAATCATATGTCCCCTTTTAAAACGCCACCGTATACTTGCGCTTTGACCTCAATTATCTCAACAACTCCACT</canonical_amplicon>
		<polymorphic_amplicon>TTTGACACATGAACGATTTGCCAATGCAGAAGAGACAATGACCAAACGAGAAGGTGCAGACGAGCGGAGAACTGGCAGAAGATATTGGAGGAGCTGAAAATTATTTATCAGGCAGAACCACGAATTTTCTCTTTTGGTTAAGGGAAACTTAATAAACTATTTGAAACAGTCCAAGAGTACAWATCATATGTCCCCTTTTAAAACGCCACCGTATACTTGCGCTTTGACCTCAATTATCTCAACAACTCCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34265</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>742328</contig_pos>
        <strand></strand>
        <context>CTTGCGCTTT[G/T]ACYTCAATTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGTACAAATCATATGTCCCCTTTTAAAACGCCACCGTATACTTGCGCTTT</left_flank>
        <right_flank>ACCTCAATTATCTCAACAACTCCACTACAGCAAGAAATATCAACTTAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTTGTCGCTGCTCCTTGACTCGAATTCTTTGTGAATGGAGTTGATATAACCCCAAAGACTTTGGATACTGCAGAATCTCTATGAAGGTCCGTACGTACTCCAGAGCCAGGATGTACTGAATAAGTACTGATTCCGTTGGAAAATTCGTTCCGGTGAATTTTAAATGCTGTGAGCATGTTGCACATTTTTGAGCTGTTGTACAGATAGAGATACATTTTAGAGGCATCTTTTGGACAGAGGATTTCTAGTTTTTTATCAATCGGTTGGTCGGATTTGACACATGAACGATTTGCCAATGCAGAAGAGACAATGACCAAACGAGAAGGTGCAGACGAGCGGAGAACTGGCAGAAGATATTGGAGGAGCTGAAAATTATTTATCAGGCAGAACCACGAATTTTCTCTTTTGGTTAAGGGAAACTTAATAAACTATTTGAAACAGTCCAAGAGTACAAATCATATGTCCCCTTTTAAAACGCCACCGTATACTTGCGCTTTGACCTCAATTATCTCAACAACTCCACTACAGCAAGAAATATCAACTTAAAATGTTAGTGATATCTTGACACACATTTTATCAGTTGACAATTTTCCGATATCTCTTAAAGGAATCGAGATAATTGAGCTCAAAACGGATGTAGTTATGATGTTTGAATTGTTCCCATATTAAATAACTTGGTGAATTAACAACAAATGATAACAGTTAAATAAAACAGAAAAAAAAGTTTGAAAAGTTTACCATAAAATGAGCAAGATGATTAATTCCAAAATGTGCCTCAAATCCGTCGGATGTCATTTTTGTCGAGGGTCCCATGACTCCAGCATTTAGGATTAGTCCGTGAAGGGGCCTGGAACCAGACAAGTAAGTAAGTTGATCTTTGAGCCAATTTTTCTTGGTTTCTTTAAAAGGTATTAAAAAGTGGTAAACTGATAAAATATTTGTGATAGTGTTATGAATATTTTGTCAGTTGATTACTTTTCGATATCTTTCAAAGGAAA</canonical>
            <polymorphic>CACTTGTCGCTGCTCCTTGACTCGAATTCTTTGTGAATGGAGTTGATATAACCCCAAAGACTTTGGATACTGCAGAATCTCTATGAAGGTCCGTACGTACTCCAGAGCCAGGATGTACTGAATAAGTACTGATTCCGTTGGAAAATTCGTTCCGGTGAATTTTAAATGCTGTGAGCATGTTGCACATTTTTGAGCTGTTGTACAGATAGAGATACATTTTAGAGGCATCTTTTGGACAGAGGATTTCTAGTTTTTTATCAATCGGTTGGTCGGATTTGACACATGAACGATTTGCCAATGCAGAAGAGACAATGACCAAACGAGAAGGTGCAGACGAGCGGAGAACTGGCAGAAGATATTGGAGGAGCTGAAAATTATTTATCAGGCAGAACCACGAATTTTCTCTTTTGGTTAAGGGAAACTTAATAAACTATTTGAAACAGTCCAAGAGTACAAATCATATGTCCCCTTTTAAAACGCCACCGTATACTTGCGCTTTKACCTCAATTATCTCAACAACTCCACTACAGCAAGAAATATCAACTTAAAATGTTAGTGATATCTTGACACACATTTTATCAGTTGACAATTTTCCGATATCTCTTAAAGGAATCGAGATAATTGAGCTCAAAACGGATGTAGTTATGATGTTTGAATTGTTCCCATATTAAATAACTTGGTGAATTAACAACAAATGATAACAGTTAAATAAAACAGAAAAAAAAGTTTGAAAAGTTTACCATAAAATGAGCAAGATGATTAATTCCAAAATGTGCCTCAAATCCGTCGGATGTCATTTTTGTCGAGGGTCCCATGACTCCAGCATTTAGGATTAGTCCGTGAAGGGGCCTGGAACCAGACAAGTAAGTAAGTTGATCTTTGAGCCAATTTTTCTTGGTTTCTTTAAAAGGTATTAAAAAGTGGTAAACTGATAAAATATTTGTGATAGTGTTATGAATATTTTGTCAGTTGATTACTTTTCGATATCTTTCAAAGGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGAAACAGTCCAAGAGTACA</pcr_primer_p1>
		<pcr_primer_p2>CCAAGTTATTTAATATGGGAACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTTGAAACAGTCCAAGAGTACAAATCATATGTCCCCTTTTAAAACGCCACCGTATACTTGCGCTTTGACCTCAATTATCTCAACAACTCCACTACAGCAAGAAATATCAACTTAAAATGTTAGTGATATCTTGACACACATTTTATCAGTTGACAATTTTCCGATATCTCTTAAAGGAATCGAGATAATTGAGCTCAAAACGGATGTAGTTATGATGTTTGAATTGTTCCCATATTAAATAACTTGG</canonical_amplicon>
		<polymorphic_amplicon>ATTTGAAACAGTCCAAGAGTACAAATCATATGTCCCCTTTTAAAACGCCACCGTATACTTGCGCTTTKACCTCAATTATCTCAACAACTCCACTACAGCAAGAAATATCAACTTAAAATGTTAGTGATATCTTGACACACATTTTATCAGTTGACAATTTTCCGATATCTCTTAAAGGAATCGAGATAATTGAGCTCAAAACGGATGTAGTTATGATGTTTGAATTGTTCCCATATTAAATAACTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34266</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>742331</contig_pos>
        <strand></strand>
        <context>GCGCTTTKAC[C/T]TCAATTATCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAAATCATATGTCCCCTTTTAAAACGCCACCGTATACTTGCGCTTTGAC</left_flank>
        <right_flank>TCAATTATCTCAACAACTCCACTACAGCAAGAAATATCAACTTAAAATGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTCGCTGCTCCTTGACTCGAATTCTTTGTGAATGGAGTTGATATAACCCCAAAGACTTTGGATACTGCAGAATCTCTATGAAGGTCCGTACGTACTCCAGAGCCAGGATGTACTGAATAAGTACTGATTCCGTTGGAAAATTCGTTCCGGTGAATTTTAAATGCTGTGAGCATGTTGCACATTTTTGAGCTGTTGTACAGATAGAGATACATTTTAGAGGCATCTTTTGGACAGAGGATTTCTAGTTTTTTATCAATCGGTTGGTCGGATTTGACACATGAACGATTTGCCAATGCAGAAGAGACAATGACCAAACGAGAAGGTGCAGACGAGCGGAGAACTGGCAGAAGATATTGGAGGAGCTGAAAATTATTTATCAGGCAGAACCACGAATTTTCTCTTTTGGTTAAGGGAAACTTAATAAACTATTTGAAACAGTCCAAGAGTACAAATCATATGTCCCCTTTTAAAACGCCACCGTATACTTGCGCTTTGACCTCAATTATCTCAACAACTCCACTACAGCAAGAAATATCAACTTAAAATGTTAGTGATATCTTGACACACATTTTATCAGTTGACAATTTTCCGATATCTCTTAAAGGAATCGAGATAATTGAGCTCAAAACGGATGTAGTTATGATGTTTGAATTGTTCCCATATTAAATAACTTGGTGAATTAACAACAAATGATAACAGTTAAATAAAACAGAAAAAAAAGTTTGAAAAGTTTACCATAAAATGAGCAAGATGATTAATTCCAAAATGTGCCTCAAATCCGTCGGATGTCATTTTTGTCGAGGGTCCCATGACTCCAGCATTTAGGATTAGTCCGTGAAGGGGCCTGGAACCAGACAAGTAAGTAAGTTGATCTTTGAGCCAATTTTTCTTGGTTTCTTTAAAAGGTATTAAAAAGTGGTAAACTGATAAAATATTTGTGATAGTGTTATGAATATTTTGTCAGTTGATTACTTTTCGATATCTTTCAAAGGAAACAA</canonical>
            <polymorphic>TTGTCGCTGCTCCTTGACTCGAATTCTTTGTGAATGGAGTTGATATAACCCCAAAGACTTTGGATACTGCAGAATCTCTATGAAGGTCCGTACGTACTCCAGAGCCAGGATGTACTGAATAAGTACTGATTCCGTTGGAAAATTCGTTCCGGTGAATTTTAAATGCTGTGAGCATGTTGCACATTTTTGAGCTGTTGTACAGATAGAGATACATTTTAGAGGCATCTTTTGGACAGAGGATTTCTAGTTTTTTATCAATCGGTTGGTCGGATTTGACACATGAACGATTTGCCAATGCAGAAGAGACAATGACCAAACGAGAAGGTGCAGACGAGCGGAGAACTGGCAGAAGATATTGGAGGAGCTGAAAATTATTTATCAGGCAGAACCACGAATTTTCTCTTTTGGTTAAGGGAAACTTAATAAACTATTTGAAACAGTCCAAGAGTACAAATCATATGTCCCCTTTTAAAACGCCACCGTATACTTGCGCTTTGACYTCAATTATCTCAACAACTCCACTACAGCAAGAAATATCAACTTAAAATGTTAGTGATATCTTGACACACATTTTATCAGTTGACAATTTTCCGATATCTCTTAAAGGAATCGAGATAATTGAGCTCAAAACGGATGTAGTTATGATGTTTGAATTGTTCCCATATTAAATAACTTGGTGAATTAACAACAAATGATAACAGTTAAATAAAACAGAAAAAAAAGTTTGAAAAGTTTACCATAAAATGAGCAAGATGATTAATTCCAAAATGTGCCTCAAATCCGTCGGATGTCATTTTTGTCGAGGGTCCCATGACTCCAGCATTTAGGATTAGTCCGTGAAGGGGCCTGGAACCAGACAAGTAAGTAAGTTGATCTTTGAGCCAATTTTTCTTGGTTTCTTTAAAAGGTATTAAAAAGTGGTAAACTGATAAAATATTTGTGATAGTGTTATGAATATTTTGTCAGTTGATTACTTTTCGATATCTTTCAAAGGAAACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGAAACAGTCCAAGAGTACA</pcr_primer_p1>
		<pcr_primer_p2>CCAAGTTATTTAATATGGGAACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTTGAAACAGTCCAAGAGTACAAATCATATGTCCCCTTTTAAAACGCCACCGTATACTTGCGCTTTGACCTCAATTATCTCAACAACTCCACTACAGCAAGAAATATCAACTTAAAATGTTAGTGATATCTTGACACACATTTTATCAGTTGACAATTTTCCGATATCTCTTAAAGGAATCGAGATAATTGAGCTCAAAACGGATGTAGTTATGATGTTTGAATTGTTCCCATATTAAATAACTTGG</canonical_amplicon>
		<polymorphic_amplicon>ATTTGAAACAGTCCAAGAGTACAAATCATATGTCCCCTTTTAAAACGCCACCGTATACTTGCGCTTTGACYTCAATTATCTCAACAACTCCACTACAGCAAGAAATATCAACTTAAAATGTTAGTGATATCTTGACACACATTTTATCAGTTGACAATTTTCCGATATCTCTTAAAGGAATCGAGATAATTGAGCTCAAAACGGATGTAGTTATGATGTTTGAATTGTTCCCATATTAAATAACTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34267</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>742364</contig_pos>
        <strand></strand>
        <context>TACAGCAAGA[A/G]Atatcaactt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATACTTGCGCTTTGACCTCAATTATCTCAACAACTCCACTACAGCAAGA</left_flank>
        <right_flank>ATATCAACTTAAAATGTTAGTGATATCTTGACACACATTTTATCAGTTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGAGTTGATATAACCCCAAAGACTTTGGATACTGCAGAATCTCTATGAAGGTCCGTACGTACTCCAGAGCCAGGATGTACTGAATAAGTACTGATTCCGTTGGAAAATTCGTTCCGGTGAATTTTAAATGCTGTGAGCATGTTGCACATTTTTGAGCTGTTGTACAGATAGAGATACATTTTAGAGGCATCTTTTGGACAGAGGATTTCTAGTTTTTTATCAATCGGTTGGTCGGATTTGACACATGAACGATTTGCCAATGCAGAAGAGACAATGACCAAACGAGAAGGTGCAGACGAGCGGAGAACTGGCAGAAGATATTGGAGGAGCTGAAAATTATTTATCAGGCAGAACCACGAATTTTCTCTTTTGGTTAAGGGAAACTTAATAAACTATTTGAAACAGTCCAAGAGTACAAATCATATGTCCCCTTTTAAAACGCCACCGTATACTTGCGCTTTGACCTCAATTATCTCAACAACTCCACTACAGCAAGAAATATCAACTTAAAATGTTAGTGATATCTTGACACACATTTTATCAGTTGACAATTTTCCGATATCTCTTAAAGGAATCGAGATAATTGAGCTCAAAACGGATGTAGTTATGATGTTTGAATTGTTCCCATATTAAATAACTTGGTGAATTAACAACAAATGATAACAGTTAAATAAAACAGAAAAAAAAGTTTGAAAAGTTTACCATAAAATGAGCAAGATGATTAATTCCAAAATGTGCCTCAAATCCGTCGGATGTCATTTTTGTCGAGGGTCCCATGACTCCAGCATTTAGGATTAGTCCGTGAAGGGGCCTGGAACCAGACAAGTAAGTAAGTTGATCTTTGAGCCAATTTTTCTTGGTTTCTTTAAAAGGTATTAAAAAGTGGTAAACTGATAAAATATTTGTGATAGTGTTATGAATATTTTGTCAGTTGATTACTTTTCGATATCTTTCAAAGGAAACAAGAGGAACCTGGTCGAAATTTTCAATTTAACCAC</canonical>
            <polymorphic>ATGGAGTTGATATAACCCCAAAGACTTTGGATACTGCAGAATCTCTATGAAGGTCCGTACGTACTCCAGAGCCAGGATGTACTGAATAAGTACTGATTCCGTTGGAAAATTCGTTCCGGTGAATTTTAAATGCTGTGAGCATGTTGCACATTTTTGAGCTGTTGTACAGATAGAGATACATTTTAGAGGCATCTTTTGGACAGAGGATTTCTAGTTTTTTATCAATCGGTTGGTCGGATTTGACACATGAACGATTTGCCAATGCAGAAGAGACAATGACCAAACGAGAAGGTGCAGACGAGCGGAGAACTGGCAGAAGATATTGGAGGAGCTGAAAATTATTTATCAGGCAGAACCACGAATTTTCTCTTTTGGTTAAGGGAAACTTAATAAACTATTTGAAACAGTCCAAGAGTACAAATCATATGTCCCCTTTTAAAACGCCACCGTATACTTGCGCTTTGACCTCAATTATCTCAACAACTCCACTACAGCAAGARATATCAACTTAAAATGTTAGTGATATCTTGACACACATTTTATCAGTTGACAATTTTCCGATATCTCTTAAAGGAATCGAGATAATTGAGCTCAAAACGGATGTAGTTATGATGTTTGAATTGTTCCCATATTAAATAACTTGGTGAATTAACAACAAATGATAACAGTTAAATAAAACAGAAAAAAAAGTTTGAAAAGTTTACCATAAAATGAGCAAGATGATTAATTCCAAAATGTGCCTCAAATCCGTCGGATGTCATTTTTGTCGAGGGTCCCATGACTCCAGCATTTAGGATTAGTCCGTGAAGGGGCCTGGAACCAGACAAGTAAGTAAGTTGATCTTTGAGCCAATTTTTCTTGGTTTCTTTAAAAGGTATTAAAAAGTGGTAAACTGATAAAATATTTGTGATAGTGTTATGAATATTTTGTCAGTTGATTACTTTTCGATATCTTTCAAAGGAAACAAGAGGAACCTGGTCGAAATTTTCAATTTAACCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGAAACAGTCCAAGAGTACA</pcr_primer_p1>
		<pcr_primer_p2>CCAAGTTATTTAATATGGGAACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTTGAAACAGTCCAAGAGTACAAATCATATGTCCCCTTTTAAAACGCCACCGTATACTTGCGCTTTGACCTCAATTATCTCAACAACTCCACTACAGCAAGAAATATCAACTTAAAATGTTAGTGATATCTTGACACACATTTTATCAGTTGACAATTTTCCGATATCTCTTAAAGGAATCGAGATAATTGAGCTCAAAACGGATGTAGTTATGATGTTTGAATTGTTCCCATATTAAATAACTTGG</canonical_amplicon>
		<polymorphic_amplicon>ATTTGAAACAGTCCAAGAGTACAAATCATATGTCCCCTTTTAAAACGCCACCGTATACTTGCGCTTTGACCTCAATTATCTCAACAACTCCACTACAGCAAGARATATCAACTTAAAATGTTAGTGATATCTTGACACACATTTTATCAGTTGACAATTTTCCGATATCTCTTAAAGGAATCGAGATAATTGAGCTCAAAACGGATGTAGTTATGATGTTTGAATTGTTCCCATATTAAATAACTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34268</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>742470</contig_pos>
        <strand></strand>
        <context>aACGGATGTA[G/T]TTATGATGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCCGATATCTCTTAAAGGAATCGAGATAATTGAGCTCAAAACGGATGTA</left_flank>
        <right_flank>TTATGATGTTTGAATTGTTCCCATATTAAATAACTTGGTGAATTAACAAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTCGTTCCGGTGAATTTTAAATGCTGTGAGCATGTTGCACATTTTTGAGCTGTTGTACAGATAGAGATACATTTTAGAGGCATCTTTTGGACAGAGGATTTCTAGTTTTTTATCAATCGGTTGGTCGGATTTGACACATGAACGATTTGCCAATGCAGAAGAGACAATGACCAAACGAGAAGGTGCAGACGAGCGGAGAACTGGCAGAAGATATTGGAGGAGCTGAAAATTATTTATCAGGCAGAACCACGAATTTTCTCTTTTGGTTAAGGGAAACTTAATAAACTATTTGAAACAGTCCAAGAGTACAAATCATATGTCCCCTTTTAAAACGCCACCGTATACTTGCGCTTTGACCTCAATTATCTCAACAACTCCACTACAGCAAGAAATATCAACTTAAAATGTTAGTGATATCTTGACACACATTTTATCAGTTGACAATTTTCCGATATCTCTTAAAGGAATCGAGATAATTGAGCTCAAAACGGATGTAGTTATGATGTTTGAATTGTTCCCATATTAAATAACTTGGTGAATTAACAACAAATGATAACAGTTAAATAAAACAGAAAAAAAAGTTTGAAAAGTTTACCATAAAATGAGCAAGATGATTAATTCCAAAATGTGCCTCAAATCCGTCGGATGTCATTTTTGTCGAGGGTCCCATGACTCCAGCATTTAGGATTAGTCCGTGAAGGGGCCTGGAACCAGACAAGTAAGTAAGTTGATCTTTGAGCCAATTTTTCTTGGTTTCTTTAAAAGGTATTAAAAAGTGGTAAACTGATAAAATATTTGTGATAGTGTTATGAATATTTTGTCAGTTGATTACTTTTCGATATCTTTCAAAGGAAACAAGAGGAACCTGGTCGAAATTTTCAATTTAACCACAATTTTATCGTTATTGAGCATTACCTGAGAATTGCTTCTATTTCTGGAAGACTTGAAACACTTAAGTTTTGTGAATTTTCAAGCTAGAAAGAAGGAAGAAAACCAA</canonical>
            <polymorphic>AAATTCGTTCCGGTGAATTTTAAATGCTGTGAGCATGTTGCACATTTTTGAGCTGTTGTACAGATAGAGATACATTTTAGAGGCATCTTTTGGACAGAGGATTTCTAGTTTTTTATCAATCGGTTGGTCGGATTTGACACATGAACGATTTGCCAATGCAGAAGAGACAATGACCAAACGAGAAGGTGCAGACGAGCGGAGAACTGGCAGAAGATATTGGAGGAGCTGAAAATTATTTATCAGGCAGAACCACGAATTTTCTCTTTTGGTTAAGGGAAACTTAATAAACTATTTGAAACAGTCCAAGAGTACAAATCATATGTCCCCTTTTAAAACGCCACCGTATACTTGCGCTTTGACCTCAATTATCTCAACAACTCCACTACAGCAAGAAATATCAACTTAAAATGTTAGTGATATCTTGACACACATTTTATCAGTTGACAATTTTCCGATATCTCTTAAAGGAATCGAGATAATTGAGCTCAAAACGGATGTAKTTATGATGTTTGAATTGTTCCCATATTAAATAACTTGGTGAATTAACAACAAATGATAACAGTTAAATAAAACAGAAAAAAAAGTTTGAAAAGTTTACCATAAAATGAGCAAGATGATTAATTCCAAAATGTGCCTCAAATCCGTCGGATGTCATTTTTGTCGAGGGTCCCATGACTCCAGCATTTAGGATTAGTCCGTGAAGGGGCCTGGAACCAGACAAGTAAGTAAGTTGATCTTTGAGCCAATTTTTCTTGGTTTCTTTAAAAGGTATTAAAAAGTGGTAAACTGATAAAATATTTGTGATAGTGTTATGAATATTTTGTCAGTTGATTACTTTTCGATATCTTTCAAAGGAAACAAGAGGAACCTGGTCGAAATTTTCAATTTAACCACAATTTTATCGTTATTGAGCATTACCTGAGAATTGCTTCTATTTCTGGAAGACTTGAAACACTTAAGTTTTGTGAATTTTCAAGCTAGAAAGAAGGAAGAAAACCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCTCAACAACTCCACTACAGC</pcr_primer_p1>
		<pcr_primer_p2>ATCATCTTGCTCATTTTATGGTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATCTCAACAACTCCACTACAGCAAGAAATATCAACTTAAAATGTTAGTGATATCTTGACACACATTTTATCAGTTGACAATTTTCCGATATCTCTTAAAGGAATCGAGATAATTGAGCTCAAAACGGATGTAGTTATGATGTTTGAATTGTTCCCATATTAAATAACTTGGTGAATTAACAACAAATGATAACAGTTAAATAAAACAGAAAAAAAAGTTTGAAAAGTTTACCATAAAATGAGCAAGATGAT</canonical_amplicon>
		<polymorphic_amplicon>TATCTCAACAACTCCACTACAGCAAGAAATATCAACTTAAAATGTTAGTGATATCTTGACACACATTTTATCAGTTGACAATTTTCCGATATCTCTTAAAGGAATCGAGATAATTGAGCTCAAAACGGATGTAKTTATGATGTTTGAATTGTTCCCATATTAAATAACTTGGTGAATTAACAACAAATGATAACAGTTAAATAAAACAGAAAAAAAAGTTTGAAAAGTTTACCATAAAATGAGCAAGATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34269</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>742564</contig_pos>
        <strand></strand>
        <context>GTTTGAAAAG[T/C]TTACCATAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAACAACAAATGATAACAGTTAAATAAAACAGAAAAAAAAGTTTGAAAAG</left_flank>
        <right_flank>TTACCATAAAATGAGCAAGATGATTAATTCCAAAATGTGCCTCAAATCCG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAGGATTTCTAGTTTTTTATCAATCGGTTGGTCGGATTTGACACATGAACGATTTGCCAATGCAGAAGAGACAATGACCAAACGAGAAGGTGCAGACGAGCGGAGAACTGGCAGAAGATATTGGAGGAGCTGAAAATTATTTATCAGGCAGAACCACGAATTTTCTCTTTTGGTTAAGGGAAACTTAATAAACTATTTGAAACAGTCCAAGAGTACAAATCATATGTCCCCTTTTAAAACGCCACCGTATACTTGCGCTTTGACCTCAATTATCTCAACAACTCCACTACAGCAAGAAATATCAACTTAAAATGTTAGTGATATCTTGACACACATTTTATCAGTTGACAATTTTCCGATATCTCTTAAAGGAATCGAGATAATTGAGCTCAAAACGGATGTAGTTATGATGTTTGAATTGTTCCCATATTAAATAACTTGGTGAATTAACAACAAATGATAACAGTTAAATAAAACAGAAAAAAAAGTTTGAAAAGTTTACCATAAAATGAGCAAGATGATTAATTCCAAAATGTGCCTCAAATCCGTCGGATGTCATTTTTGTCGAGGGTCCCATGACTCCAGCATTTAGGATTAGTCCGTGAAGGGGCCTGGAACCAGACAAGTAAGTAAGTTGATCTTTGAGCCAATTTTTCTTGGTTTCTTTAAAAGGTATTAAAAAGTGGTAAACTGATAAAATATTTGTGATAGTGTTATGAATATTTTGTCAGTTGATTACTTTTCGATATCTTTCAAAGGAAACAAGAGGAACCTGGTCGAAATTTTCAATTTAACCACAATTTTATCGTTATTGAGCATTACCTGAGAATTGCTTCTATTTCTGGAAGACTTGAAACACTTAAGTTTTGTGAATTTTCAAGCTAGAAAGAAGGAAGAAAACCAATTCGTTGACATAAAGAATTGAATAGAATGTTTAGGAAAATCTCTATGGAAATTGGTATCTTCACAGTAACTAAGGAAATTGGGGTGATCTAAAA</canonical>
            <polymorphic>CAGAGGATTTCTAGTTTTTTATCAATCGGTTGGTCGGATTTGACACATGAACGATTTGCCAATGCAGAAGAGACAATGACCAAACGAGAAGGTGCAGACGAGCGGAGAACTGGCAGAAGATATTGGAGGAGCTGAAAATTATTTATCAGGCAGAACCACGAATTTTCTCTTTTGGTTAAGGGAAACTTAATAAACTATTTGAAACAGTCCAAGAGTACAAATCATATGTCCCCTTTTAAAACGCCACCGTATACTTGCGCTTTGACCTCAATTATCTCAACAACTCCACTACAGCAAGAAATATCAACTTAAAATGTTAGTGATATCTTGACACACATTTTATCAGTTGACAATTTTCCGATATCTCTTAAAGGAATCGAGATAATTGAGCTCAAAACGGATGTAGTTATGATGTTTGAATTGTTCCCATATTAAATAACTTGGTGAATTAACAACAAATGATAACAGTTAAATAAAACAGAAAAAAAAGTTTGAAAAGYTTACCATAAAATGAGCAAGATGATTAATTCCAAAATGTGCCTCAAATCCGTCGGATGTCATTTTTGTCGAGGGTCCCATGACTCCAGCATTTAGGATTAGTCCGTGAAGGGGCCTGGAACCAGACAAGTAAGTAAGTTGATCTTTGAGCCAATTTTTCTTGGTTTCTTTAAAAGGTATTAAAAAGTGGTAAACTGATAAAATATTTGTGATAGTGTTATGAATATTTTGTCAGTTGATTACTTTTCGATATCTTTCAAAGGAAACAAGAGGAACCTGGTCGAAATTTTCAATTTAACCACAATTTTATCGTTATTGAGCATTACCTGAGAATTGCTTCTATTTCTGGAAGACTTGAAACACTTAAGTTTTGTGAATTTTCAAGCTAGAAAGAAGGAAGAAAACCAATTCGTTGACATAAAGAATTGAATAGAATGTTTAGGAAAATCTCTATGGAAATTGGTATCTTCACAGTAACTAAGGAAATTGGGGTGATCTAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>251 222 189 153 97 88</canonical_bands>
                <polymorphic_bands>342 251 222 97 88</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTTTGAATTGTTCCCATATTA</pcr_primer_p1>
		<pcr_primer_p2>TCAACTTACTTACTTGTCTGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>ATGTTTGAATTGTTCCCATATTAAATAACTTGGTGAATTAACAACAAATGATAACAGTTAAATAAAACAGAAAAAAAAGTTTGAAAAGTTTACCATAAAATGAGCAAGATGATTAATTCCAAAATGTGCCTCAAATCCGTCGGATGTCATTTTTGTCGAGGGTCCCATGACTCCAGCATTTAGGATTAGTCCGTGAAGGGGCCTGGAACCAGACAAGTAAGTAAGTTGA</canonical_amplicon>
		<polymorphic_amplicon>ATGTTTGAATTGTTCCCATATTAAATAACTTGGTGAATTAACAACAAATGATAACAGTTAAATAAAACAGAAAAAAAAGTTTGAAAAGYTTACCATAAAATGAGCAAGATGATTAATTCCAAAATGTGCCTCAAATCCGTCGGATGTCATTTTTGTCGAGGGTCCCATGACTCCAGCATTTAGGATTAGTCCGTGAAGGGGCCTGGAACCAGACAAGTAAGTAAGTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34270</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>764017</contig_pos>
        <strand></strand>
        <context>TCCTTCATAC[C/T]ATTTTTCTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTATCTCCAAAAACATACATACCTCTCCATTCAACAAATCCTTCATAC</left_flank>
        <right_flank>ATTTTTCTCTGCGTCTCCATTCCCAGCATTCTCTCTATTTCGATCACTAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTCGAAATTTATTAAAAGTCCAGAAAACTGCGAAAATCGGAATTCTGAAAAACAATTCAAAAGATAAACATTTCAAAAATTTAGAACATTTAACGATTTCAGAAATTCCAAAAATATAAAAAAAATTCAGATACTCGGAATTAAAAATTCAAAAAAAAAAGAAACACAATGGTGTCAAAATGCGAGCTGGAAAATGTTTAGTTTTCGAAATATTTAGGTCGTCATTTGAAAAAATCCCCCATGGCTGAAAATTCTTTGTCAATTCGATTAGGTTTTTGCCAGATTCGAAATTTTTCTCAAAATATTGAAACTGAAACTTTTTTTTCCTTTCCAGATTTCAAAAAACTTTTTGATTCAGAAATTAAGAAATCATCACCGAATCAATCAGTTTTTTTAGTTCCAAATACTTCTCAAATTTTTGAAACATTCTTTTTATTTTTTGAAATATTATCTCCAAAAACATACATACCTCTCCATTCAACAAATCCTTCATACCATTTTTCTCTGCGTCTCCATTCCCAGCATTCTCTCTATTTCGATCACTATGAATCGTTCGAATTCTCAATGGACCAGTTCTCACAATTCGTCCTTTTTTATTCGTTTTTTTTGATAAAAAAGAGAAGGAAAAAATGAGCAAAAAGAAGAGGAAAAATGTCAGAAAAATTCGGTTCCAGCGATATTTTAAGACTTGCATTATTATCTGAAAATTTGAAGATAAAGTTTAAAATTTTAAAGGAATTTGGTTATTGAGAAATTCAGAAATTCAGAATAAAAACAGTCGAAAATTTAAAAGGAAATTATTGAGGGAATGAAAAAATCGGAAAGTCAAAAAATTTGAAAAAAATTTTTCAAATTTTGAAAGAGGTGAAAAAATGAAAAAAGTTATAAATAGTCCAAAAAGTTCTCAAGAAGTTCTTACAAGGCAGTTACTTGAAAGAGCAGGTTTAACTTTTTTTGAAATTTTGGGAGCAGATAGAAGAGCTTATGAGGAATCCA</canonical>
            <polymorphic>AAAATTCGAAATTTATTAAAAGTCCAGAAAACTGCGAAAATCGGAATTCTGAAAAACAATTCAAAAGATAAACATTTCAAAAATTTAGAACATTTAACGATTTCAGAAATTCCAAAAATATAAAAAAAATTCAGATACTCGGAATTAAAAATTCAAAAAAAAAAGAAACACAATGGTGTCAAAATGCGAGCTGGAAAATGTTTAGTTTTCGAAATATTTAGGTCGTCATTTGAAAAAATCCCCCATGGCTGAAAATTCTTTGTCAATTCGATTAGGTTTTTGCCAGATTCGAAATTTTTCTCAAAATATTGAAACTGAAACTTTTTTTTCCTTTCCAGATTTCAAAAAACTTTTTGATTCAGAAATTAAGAAATCATCACCGAATCAATCAGTTTTTTTAGTTCCAAATACTTCTCAAATTTTTGAAACATTCTTTTTATTTTTTGAAATATTATCTCCAAAAACATACATACCTCTCCATTCAACAAATCCTTCATACYATTTTTCTCTGCGTCTCCATTCCCAGCATTCTCTCTATTTCGATCACTATGAATCGTTCGAATTCTCAATGGACCAGTTCTCACAATTCGTCCTTTTTTATTCGTTTTTTTTGATAAAAAAGAGAAGGAAAAAATGAGCAAAAAGAAGAGGAAAAATGTCAGAAAAATTCGGTTCCAGCGATATTTTAAGACTTGCATTATTATCTGAAAATTTGAAGATAAAGTTTAAAATTTTAAAGGAATTTGGTTATTGAGAAATTCAGAAATTCAGAATAAAAACAGTCGAAAATTTAAAAGGAAATTATTGAGGGAATGAAAAAATCGGAAAGTCAAAAAATTTGAAAAAAATTTTTCAAATTTTGAAAGAGGTGAAAAAATGAAAAAAGTTATAAATAGTCCAAAAAGTTCTCAAGAAGTTCTTACAAGGCAGTTACTTGAAAGAGCAGGTTTAACTTTTTTTGAAATTTTGGGAGCAGATAGAAGAGCTTATGAGGAATCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAAATATTATCTCCAAAAACATA</pcr_primer_p1>
		<pcr_primer_p2>AAGTCTTAAAATATCGCTGGAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTGAAATATTATCTCCAAAAACATACATACCTCTCCATTCAACAAATCCTTCATACCATTTTTCTCTGCGTCTCCATTCCCAGCATTCTCTCTATTTCGATCACTATGAATCGTTCGAATTCTCAATGGACCAGTTCTCACAATTCGTCCTTTTTTATTCGTTTTTTTTGATAAAAAAGAGAAGGAAAAAATGAGCAAAAAGAAGAGGAAAAATGTCAGAAAAATTCGGTTCCAGCGATATTTTAAGACTT</canonical_amplicon>
		<polymorphic_amplicon>TTGAAATATTATCTCCAAAAACATACATACCTCTCCATTCAACAAATCCTTCATACYATTTTTCTCTGCGTCTCCATTCCCAGCATTCTCTCTATTTCGATCACTATGAATCGTTCGAATTCTCAATGGACCAGTTCTCACAATTCGTCCTTTTTTATTCGTTTTTTTTGATAAAAAAGAGAAGGAAAAAATGAGCAAAAAGAAGAGGAAAAATGTCAGAAAAATTCGGTTCCAGCGATATTTTAAGACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34271</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>764046</contig_pos>
        <strand></strand>
        <context>ATTCCCAGCA[T/C]TCTCTCTATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CATTCAACAAATCCTTCATACCATTTTTCTCTGCGTCTCCATTCCCAGCA</left_flank>
        <right_flank>TCTCTCTATTTCGATCACTATGAATCGTTCGAATTCTCAATGGACCAGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTGCGAAAATCGGAATTCTGAAAAACAATTCAAAAGATAAACATTTCAAAAATTTAGAACATTTAACGATTTCAGAAATTCCAAAAATATAAAAAAAATTCAGATACTCGGAATTAAAAATTCAAAAAAAAAAGAAACACAATGGTGTCAAAATGCGAGCTGGAAAATGTTTAGTTTTCGAAATATTTAGGTCGTCATTTGAAAAAATCCCCCATGGCTGAAAATTCTTTGTCAATTCGATTAGGTTTTTGCCAGATTCGAAATTTTTCTCAAAATATTGAAACTGAAACTTTTTTTTCCTTTCCAGATTTCAAAAAACTTTTTGATTCAGAAATTAAGAAATCATCACCGAATCAATCAGTTTTTTTAGTTCCAAATACTTCTCAAATTTTTGAAACATTCTTTTTATTTTTTGAAATATTATCTCCAAAAACATACATACCTCTCCATTCAACAAATCCTTCATACCATTTTTCTCTGCGTCTCCATTCCCAGCATTCTCTCTATTTCGATCACTATGAATCGTTCGAATTCTCAATGGACCAGTTCTCACAATTCGTCCTTTTTTATTCGTTTTTTTTGATAAAAAAGAGAAGGAAAAAATGAGCAAAAAGAAGAGGAAAAATGTCAGAAAAATTCGGTTCCAGCGATATTTTAAGACTTGCATTATTATCTGAAAATTTGAAGATAAAGTTTAAAATTTTAAAGGAATTTGGTTATTGAGAAATTCAGAAATTCAGAATAAAAACAGTCGAAAATTTAAAAGGAAATTATTGAGGGAATGAAAAAATCGGAAAGTCAAAAAATTTGAAAAAAATTTTTCAAATTTTGAAAGAGGTGAAAAAATGAAAAAAGTTATAAATAGTCCAAAAAGTTCTCAAGAAGTTCTTACAAGGCAGTTACTTGAAAGAGCAGGTTTAACTTTTTTTGAAATTTTGGGAGCAGATAGAAGAGCTTATGAGGAATCCAAATCTGTTAAAAAAATCAGCAAAATGCTC</canonical>
            <polymorphic>AACTGCGAAAATCGGAATTCTGAAAAACAATTCAAAAGATAAACATTTCAAAAATTTAGAACATTTAACGATTTCAGAAATTCCAAAAATATAAAAAAAATTCAGATACTCGGAATTAAAAATTCAAAAAAAAAAGAAACACAATGGTGTCAAAATGCGAGCTGGAAAATGTTTAGTTTTCGAAATATTTAGGTCGTCATTTGAAAAAATCCCCCATGGCTGAAAATTCTTTGTCAATTCGATTAGGTTTTTGCCAGATTCGAAATTTTTCTCAAAATATTGAAACTGAAACTTTTTTTTCCTTTCCAGATTTCAAAAAACTTTTTGATTCAGAAATTAAGAAATCATCACCGAATCAATCAGTTTTTTTAGTTCCAAATACTTCTCAAATTTTTGAAACATTCTTTTTATTTTTTGAAATATTATCTCCAAAAACATACATACCTCTCCATTCAACAAATCCTTCATACCATTTTTCTCTGCGTCTCCATTCCCAGCAYTCTCTCTATTTCGATCACTATGAATCGTTCGAATTCTCAATGGACCAGTTCTCACAATTCGTCCTTTTTTATTCGTTTTTTTTGATAAAAAAGAGAAGGAAAAAATGAGCAAAAAGAAGAGGAAAAATGTCAGAAAAATTCGGTTCCAGCGATATTTTAAGACTTGCATTATTATCTGAAAATTTGAAGATAAAGTTTAAAATTTTAAAGGAATTTGGTTATTGAGAAATTCAGAAATTCAGAATAAAAACAGTCGAAAATTTAAAAGGAAATTATTGAGGGAATGAAAAAATCGGAAAGTCAAAAAATTTGAAAAAAATTTTTCAAATTTTGAAAGAGGTGAAAAAATGAAAAAAGTTATAAATAGTCCAAAAAGTTCTCAAGAAGTTCTTACAAGGCAGTTACTTGAAAGAGCAGGTTTAACTTTTTTTGAAATTTTGGGAGCAGATAGAAGAGCTTATGAGGAATCCAAATCTGTTAAAAAAATCAGCAAAATGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACATACCTCTCCATTCAACAA</pcr_primer_p1>
		<pcr_primer_p2>AAATTTTCAGATAATAATGCAAGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATACATACCTCTCCATTCAACAAATCCTTCATACCATTTTTCTCTGCGTCTCCATTCCCAGCATTCTCTCTATTTCGATCACTATGAATCGTTCGAATTCTCAATGGACCAGTTCTCACAATTCGTCCTTTTTTATTCGTTTTTTTTGATAAAAAAGAGAAGGAAAAAATGAGCAAAAAGAAGAGGAAAAATGTCAGAAAAATTCGGTTCCAGCGATATTTTAAGACTTGCATTATTATCTGAAAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATACATACCTCTCCATTCAACAAATCCTTCATACCATTTTTCTCTGCGTCTCCATTCCCAGCAYTCTCTCTATTTCGATCACTATGAATCGTTCGAATTCTCAATGGACCAGTTCTCACAATTCGTCCTTTTTTATTCGTTTTTTTTGATAAAAAAGAGAAGGAAAAAATGAGCAAAAAGAAGAGGAAAAATGTCAGAAAAATTCGGTTCCAGCGATATTTTAAGACTTGCATTATTATCTGAAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34272</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>764309</contig_pos>
        <strand></strand>
        <context>GTCGAAAATT[T/C]AAAAGGAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTTGGTTATTGAGAAATTCAGAAATTCAGAATAAAAACAGTCGAAAATT</left_flank>
        <right_flank>AAAAGGAAATTATTGAGGGAATGAAAAAATCGGAAAGTCAAAAAATTTGA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTTCTCAAAATATTGAAACTGAAACTTTTTTTTCCTTTCCAGATTTCAAAAAACTTTTTGATTCAGAAATTAAGAAATCATCACCGAATCAATCAGTTTTTTTAGTTCCAAATACTTCTCAAATTTTTGAAACATTCTTTTTATTTTTTGAAATATTATCTCCAAAAACATACATACCTCTCCATTCAACAAATCCTTCATACCATTTTTCTCTGCGTCTCCATTCCCAGCATTCTCTCTATTTCGATCACTATGAATCGTTCGAATTCTCAATGGACCAGTTCTCACAATTCGTCCTTTTTTATTCGTTTTTTTTGATAAAAAAGAGAAGGAAAAAATGAGCAAAAAGAAGAGGAAAAATGTCAGAAAAATTCGGTTCCAGCGATATTTTAAGACTTGCATTATTATCTGAAAATTTGAAGATAAAGTTTAAAATTTTAAAGGAATTTGGTTATTGAGAAATTCAGAAATTCAGAATAAAAACAGTCGAAAATTTAAAAGGAAATTATTGAGGGAATGAAAAAATCGGAAAGTCAAAAAATTTGAAAAAAATTTTTCAAATTTTGAAAGAGGTGAAAAAATGAAAAAAGTTATAAATAGTCCAAAAAGTTCTCAAGAAGTTCTTACAAGGCAGTTACTTGAAAGAGCAGGTTTAACTTTTTTTGAAATTTTGGGAGCAGATAGAAGAGCTTATGAGGAATCCAAATCTGTTAAAAAAATCAGCAAAATGCTCACGTGAGCTAAGTTATGACCTAGAAAAGTTTCCCTATGATTAATTTCTCGTGAAATTTTTTTCATGGAATAGTGTATTTCTTTTAAAACAATAGATTTCAATCAGCAGTGTGGTAAAGTGGTAAAATGGCAAGTTCAGAGGAGGAAGGTTGTAGGTTCGATTCTCCCGATCCCAAAAATTTTGCAAAATTTTTTTGTTTTATTTTAAGCTGCCATAACTGGCTCTGGAATAAAATTTACGCAATCTAATTATGTTTTTGGGGA</canonical>
            <polymorphic>AATTTTTCTCAAAATATTGAAACTGAAACTTTTTTTTCCTTTCCAGATTTCAAAAAACTTTTTGATTCAGAAATTAAGAAATCATCACCGAATCAATCAGTTTTTTTAGTTCCAAATACTTCTCAAATTTTTGAAACATTCTTTTTATTTTTTGAAATATTATCTCCAAAAACATACATACCTCTCCATTCAACAAATCCTTCATACCATTTTTCTCTGCGTCTCCATTCCCAGCATTCTCTCTATTTCGATCACTATGAATCGTTCGAATTCTCAATGGACCAGTTCTCACAATTCGTCCTTTTTTATTCGTTTTTTTTGATAAAAAAGAGAAGGAAAAAATGAGCAAAAAGAAGAGGAAAAATGTCAGAAAAATTCGGTTCCAGCGATATTTTAAGACTTGCATTATTATCTGAAAATTTGAAGATAAAGTTTAAAATTTTAAAGGAATTTGGTTATTGAGAAATTCAGAAATTCAGAATAAAAACAGTCGAAAATTYAAAAGGAAATTATTGAGGGAATGAAAAAATCGGAAAGTCAAAAAATTTGAAAAAAATTTTTCAAATTTTGAAAGAGGTGAAAAAATGAAAAAAGTTATAAATAGTCCAAAAAGTTCTCAAGAAGTTCTTACAAGGCAGTTACTTGAAAGAGCAGGTTTAACTTTTTTTGAAATTTTGGGAGCAGATAGAAGAGCTTATGAGGAATCCAAATCTGTTAAAAAAATCAGCAAAATGCTCACGTGAGCTAAGTTATGACCTAGAAAAGTTTCCCTATGATTAATTTCTCGTGAAATTTTTTTCATGGAATAGTGTATTTCTTTTAAAACAATAGATTTCAATCAGCAGTGTGGTAAAGTGGTAAAATGGCAAGTTCAGAGGAGGAAGGTTGTAGGTTCGATTCTCCCGATCCCAAAAATTTTGCAAAATTTTTTTGTTTTATTTTAAGCTGCCATAACTGGCTCTGGAATAAAATTTACGCAATCTAATTATGTTTTTGGGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>143 125 123 120 107 105 48 46 44 31 23 20 16 11 11 10 9 8</canonical_bands>
                <polymorphic_bands>143 125 123 120 107 105 71 46 44 31 20 16 11 11 10 9 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>435 321 179 57 8</canonical_bands>
                <polymorphic_bands>435 378 179 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>320 158 121 74 62 59 58 57 43 40 8</canonical_bands>
                <polymorphic_bands>320 215 121 74 62 59 58 43 40 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCCAGCGATATTTTAAGACT</pcr_primer_p1>
		<pcr_primer_p2>ACTTCTTGAGAACTTTTTGGACT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTCCAGCGATATTTTAAGACTTGCATTATTATCTGAAAATTTGAAGATAAAGTTTAAAATTTTAAAGGAATTTGGTTATTGAGAAATTCAGAAATTCAGAATAAAAACAGTCGAAAATTTAAAAGGAAATTATTGAGGGAATGAAAAAATCGGAAAGTCAAAAAATTTGAAAAAAATTTTTCAAATTTTGAAAGAGGTGAAAAAATGAAAAAAGTTATAAATAGTCCAAAAAGTTCTCAAGAAGT</canonical_amplicon>
		<polymorphic_amplicon>GTTCCAGCGATATTTTAAGACTTGCATTATTATCTGAAAATTTGAAGATAAAGTTTAAAATTTTAAAGGAATTTGGTTATTGAGAAATTCAGAAATTCAGAATAAAAACAGTCGAAAATTYAAAAGGAAATTATTGAGGGAATGAAAAAATCGGAAAGTCAAAAAATTTGAAAAAAATTTTTCAAATTTTGAAAGAGGTGAAAAAATGAAAAAAGTTATAAATAGTCCAAAAAGTTCTCAAGAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34273</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>764329</contig_pos>
        <strand></strand>
        <context>TTATTGAGGG[A/G]ATGAAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAATTCAGAATAAAAACAGTCGAAAATTTAAAAGGAAATTATTGAGGG</left_flank>
        <right_flank>ATGAAAAAATCGGAAAGTCAAAAAATTTGAAAAAAATTTTTCAAATTTTG</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTGAAACTTTTTTTTCCTTTCCAGATTTCAAAAAACTTTTTGATTCAGAAATTAAGAAATCATCACCGAATCAATCAGTTTTTTTAGTTCCAAATACTTCTCAAATTTTTGAAACATTCTTTTTATTTTTTGAAATATTATCTCCAAAAACATACATACCTCTCCATTCAACAAATCCTTCATACCATTTTTCTCTGCGTCTCCATTCCCAGCATTCTCTCTATTTCGATCACTATGAATCGTTCGAATTCTCAATGGACCAGTTCTCACAATTCGTCCTTTTTTATTCGTTTTTTTTGATAAAAAAGAGAAGGAAAAAATGAGCAAAAAGAAGAGGAAAAATGTCAGAAAAATTCGGTTCCAGCGATATTTTAAGACTTGCATTATTATCTGAAAATTTGAAGATAAAGTTTAAAATTTTAAAGGAATTTGGTTATTGAGAAATTCAGAAATTCAGAATAAAAACAGTCGAAAATTTAAAAGGAAATTATTGAGGGAATGAAAAAATCGGAAAGTCAAAAAATTTGAAAAAAATTTTTCAAATTTTGAAAGAGGTGAAAAAATGAAAAAAGTTATAAATAGTCCAAAAAGTTCTCAAGAAGTTCTTACAAGGCAGTTACTTGAAAGAGCAGGTTTAACTTTTTTTGAAATTTTGGGAGCAGATAGAAGAGCTTATGAGGAATCCAAATCTGTTAAAAAAATCAGCAAAATGCTCACGTGAGCTAAGTTATGACCTAGAAAAGTTTCCCTATGATTAATTTCTCGTGAAATTTTTTTCATGGAATAGTGTATTTCTTTTAAAACAATAGATTTCAATCAGCAGTGTGGTAAAGTGGTAAAATGGCAAGTTCAGAGGAGGAAGGTTGTAGGTTCGATTCTCCCGATCCCAAAAATTTTGCAAAATTTTTTTGTTTTATTTTAAGCTGCCATAACTGGCTCTGGAATAAAATTTACGCAATCTAATTATGTTTTTGGGGAGTTTCTCGTTATGAATAGGC</canonical>
            <polymorphic>AACTGAAACTTTTTTTTCCTTTCCAGATTTCAAAAAACTTTTTGATTCAGAAATTAAGAAATCATCACCGAATCAATCAGTTTTTTTAGTTCCAAATACTTCTCAAATTTTTGAAACATTCTTTTTATTTTTTGAAATATTATCTCCAAAAACATACATACCTCTCCATTCAACAAATCCTTCATACCATTTTTCTCTGCGTCTCCATTCCCAGCATTCTCTCTATTTCGATCACTATGAATCGTTCGAATTCTCAATGGACCAGTTCTCACAATTCGTCCTTTTTTATTCGTTTTTTTTGATAAAAAAGAGAAGGAAAAAATGAGCAAAAAGAAGAGGAAAAATGTCAGAAAAATTCGGTTCCAGCGATATTTTAAGACTTGCATTATTATCTGAAAATTTGAAGATAAAGTTTAAAATTTTAAAGGAATTTGGTTATTGAGAAATTCAGAAATTCAGAATAAAAACAGTCGAAAATTTAAAAGGAAATTATTGAGGGRATGAAAAAATCGGAAAGTCAAAAAATTTGAAAAAAATTTTTCAAATTTTGAAAGAGGTGAAAAAATGAAAAAAGTTATAAATAGTCCAAAAAGTTCTCAAGAAGTTCTTACAAGGCAGTTACTTGAAAGAGCAGGTTTAACTTTTTTTGAAATTTTGGGAGCAGATAGAAGAGCTTATGAGGAATCCAAATCTGTTAAAAAAATCAGCAAAATGCTCACGTGAGCTAAGTTATGACCTAGAAAAGTTTCCCTATGATTAATTTCTCGTGAAATTTTTTTCATGGAATAGTGTATTTCTTTTAAAACAATAGATTTCAATCAGCAGTGTGGTAAAGTGGTAAAATGGCAAGTTCAGAGGAGGAAGGTTGTAGGTTCGATTCTCCCGATCCCAAAAATTTTGCAAAATTTTTTTGTTTTATTTTAAGCTGCCATAACTGGCTCTGGAATAAAATTTACGCAATCTAATTATGTTTTTGGGGAGTTTCTCGTTATGAATAGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCCAGCGATATTTTAAGACT</pcr_primer_p1>
		<pcr_primer_p2>ACTTCTTGAGAACTTTTTGGACT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTCCAGCGATATTTTAAGACTTGCATTATTATCTGAAAATTTGAAGATAAAGTTTAAAATTTTAAAGGAATTTGGTTATTGAGAAATTCAGAAATTCAGAATAAAAACAGTCGAAAATTTAAAAGGAAATTATTGAGGGAATGAAAAAATCGGAAAGTCAAAAAATTTGAAAAAAATTTTTCAAATTTTGAAAGAGGTGAAAAAATGAAAAAAGTTATAAATAGTCCAAAAAGTTCTCAAGAAGT</canonical_amplicon>
		<polymorphic_amplicon>GTTCCAGCGATATTTTAAGACTTGCATTATTATCTGAAAATTTGAAGATAAAGTTTAAAATTTTAAAGGAATTTGGTTATTGAGAAATTCAGAAATTCAGAATAAAAACAGTCGAAAATTTAAAAGGAAATTATTGAGGGRATGAAAAAATCGGAAAGTCAAAAAATTTGAAAAAAATTTTTCAAATTTTGAAAGAGGTGAAAAAATGAAAAAAGTTATAAATAGTCCAAAAAGTTCTCAAGAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34274</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>764355</contig_pos>
        <strand></strand>
        <context>AGTCAAAAAA[T/C]TTGAAMAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATTTAAAAGGAAATTATTGAGGGAATGAAAAAATCGGAAAGTCAAAAAA</left_flank>
        <right_flank>TTGAAAAAAATTTTTCAAATTTTGAAAGAGGTGAAAAAATGAAAAAAGTT</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCAAAAAACTTTTTGATTCAGAAATTAAGAAATCATCACCGAATCAATCAGTTTTTTTAGTTCCAAATACTTCTCAAATTTTTGAAACATTCTTTTTATTTTTTGAAATATTATCTCCAAAAACATACATACCTCTCCATTCAACAAATCCTTCATACCATTTTTCTCTGCGTCTCCATTCCCAGCATTCTCTCTATTTCGATCACTATGAATCGTTCGAATTCTCAATGGACCAGTTCTCACAATTCGTCCTTTTTTATTCGTTTTTTTTGATAAAAAAGAGAAGGAAAAAATGAGCAAAAAGAAGAGGAAAAATGTCAGAAAAATTCGGTTCCAGCGATATTTTAAGACTTGCATTATTATCTGAAAATTTGAAGATAAAGTTTAAAATTTTAAAGGAATTTGGTTATTGAGAAATTCAGAAATTCAGAATAAAAACAGTCGAAAATTTAAAAGGAAATTATTGAGGGAATGAAAAAATCGGAAAGTCAAAAAATTTGAAAAAAATTTTTCAAATTTTGAAAGAGGTGAAAAAATGAAAAAAGTTATAAATAGTCCAAAAAGTTCTCAAGAAGTTCTTACAAGGCAGTTACTTGAAAGAGCAGGTTTAACTTTTTTTGAAATTTTGGGAGCAGATAGAAGAGCTTATGAGGAATCCAAATCTGTTAAAAAAATCAGCAAAATGCTCACGTGAGCTAAGTTATGACCTAGAAAAGTTTCCCTATGATTAATTTCTCGTGAAATTTTTTTCATGGAATAGTGTATTTCTTTTAAAACAATAGATTTCAATCAGCAGTGTGGTAAAGTGGTAAAATGGCAAGTTCAGAGGAGGAAGGTTGTAGGTTCGATTCTCCCGATCCCAAAAATTTTGCAAAATTTTTTTGTTTTATTTTAAGCTGCCATAACTGGCTCTGGAATAAAATTTACGCAATCTAATTATGTTTTTGGGGAGTTTCTCGTTATGAATAGGCATTTTCCAGAATAAAAACAGACATTT</canonical>
            <polymorphic>ATTTCAAAAAACTTTTTGATTCAGAAATTAAGAAATCATCACCGAATCAATCAGTTTTTTTAGTTCCAAATACTTCTCAAATTTTTGAAACATTCTTTTTATTTTTTGAAATATTATCTCCAAAAACATACATACCTCTCCATTCAACAAATCCTTCATACCATTTTTCTCTGCGTCTCCATTCCCAGCATTCTCTCTATTTCGATCACTATGAATCGTTCGAATTCTCAATGGACCAGTTCTCACAATTCGTCCTTTTTTATTCGTTTTTTTTGATAAAAAAGAGAAGGAAAAAATGAGCAAAAAGAAGAGGAAAAATGTCAGAAAAATTCGGTTCCAGCGATATTTTAAGACTTGCATTATTATCTGAAAATTTGAAGATAAAGTTTAAAATTTTAAAGGAATTTGGTTATTGAGAAATTCAGAAATTCAGAATAAAAACAGTCGAAAATTTAAAAGGAAATTATTGAGGGAATGAAAAAATCGGAAAGTCAAAAAAYTTGAAAAAAATTTTTCAAATTTTGAAAGAGGTGAAAAAATGAAAAAAGTTATAAATAGTCCAAAAAGTTCTCAAGAAGTTCTTACAAGGCAGTTACTTGAAAGAGCAGGTTTAACTTTTTTTGAAATTTTGGGAGCAGATAGAAGAGCTTATGAGGAATCCAAATCTGTTAAAAAAATCAGCAAAATGCTCACGTGAGCTAAGTTATGACCTAGAAAAGTTTCCCTATGATTAATTTCTCGTGAAATTTTTTTCATGGAATAGTGTATTTCTTTTAAAACAATAGATTTCAATCAGCAGTGTGGTAAAGTGGTAAAATGGCAAGTTCAGAGGAGGAAGGTTGTAGGTTCGATTCTCCCGATCCCAAAAATTTTGCAAAATTTTTTTGTTTTATTTTAAGCTGCCATAACTGGCTCTGGAATAAAATTTACGCAATCTAATTATGTTTTTGGGGAGTTTCTCGTTATGAATAGGCATTTTCCAGAATAAAAACAGACATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>143 123 120 107 105 79 77 48 46 44 23 20 16 11 11 10 9 8</canonical_bands>
                <polymorphic_bands>143 123 120 107 105 79 77 59 46 44 23 20 16 11 10 9 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>143 123 108 107 81 63 54 46 44 36 25 24 23 20 16 14 12 12 11 11 10 9 8</canonical_bands>
                <polymorphic_bands>143 123 108 107 81 63 54 47 46 44 25 24 23 20 16 14 12 12 11 10 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCCAGCGATATTTTAAGACT</pcr_primer_p1>
		<pcr_primer_p2>ACTTCTTGAGAACTTTTTGGACT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTCCAGCGATATTTTAAGACTTGCATTATTATCTGAAAATTTGAAGATAAAGTTTAAAATTTTAAAGGAATTTGGTTATTGAGAAATTCAGAAATTCAGAATAAAAACAGTCGAAAATTTAAAAGGAAATTATTGAGGGAATGAAAAAATCGGAAAGTCAAAAAATTTGAAAAAAATTTTTCAAATTTTGAAAGAGGTGAAAAAATGAAAAAAGTTATAAATAGTCCAAAAAGTTCTCAAGAAGT</canonical_amplicon>
		<polymorphic_amplicon>GTTCCAGCGATATTTTAAGACTTGCATTATTATCTGAAAATTTGAAGATAAAGTTTAAAATTTTAAAGGAATTTGGTTATTGAGAAATTCAGAAATTCAGAATAAAAACAGTCGAAAATTTAAAAGGAAATTATTGAGGGAATGAAAAAATCGGAAAGTCAAAAAAYTTGAAAAAAATTTTTCAAATTTTGAAAGAGGTGAAAAAATGAAAAAAGTTATAAATAGTCCAAAAAGTTCTCAAGAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34275</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>764361</contig_pos>
        <strand></strand>
        <context>AAAAYTTGAA[A/C]AAAATTTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAGGAAATTATTGAGGGAATGAAAAAATCGGAAAGTCAAAAAATTTGAA</left_flank>
        <right_flank>AAAATTTTTCAAATTTTGAAAGAGGTGAAAAAATGAAAAAAGTTATAAAT</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAACTTTTTGATTCAGAAATTAAGAAATCATCACCGAATCAATCAGTTTTTTTAGTTCCAAATACTTCTCAAATTTTTGAAACATTCTTTTTATTTTTTGAAATATTATCTCCAAAAACATACATACCTCTCCATTCAACAAATCCTTCATACCATTTTTCTCTGCGTCTCCATTCCCAGCATTCTCTCTATTTCGATCACTATGAATCGTTCGAATTCTCAATGGACCAGTTCTCACAATTCGTCCTTTTTTATTCGTTTTTTTTGATAAAAAAGAGAAGGAAAAAATGAGCAAAAAGAAGAGGAAAAATGTCAGAAAAATTCGGTTCCAGCGATATTTTAAGACTTGCATTATTATCTGAAAATTTGAAGATAAAGTTTAAAATTTTAAAGGAATTTGGTTATTGAGAAATTCAGAAATTCAGAATAAAAACAGTCGAAAATTTAAAAGGAAATTATTGAGGGAATGAAAAAATCGGAAAGTCAAAAAATTTGAAAAAAATTTTTCAAATTTTGAAAGAGGTGAAAAAATGAAAAAAGTTATAAATAGTCCAAAAAGTTCTCAAGAAGTTCTTACAAGGCAGTTACTTGAAAGAGCAGGTTTAACTTTTTTTGAAATTTTGGGAGCAGATAGAAGAGCTTATGAGGAATCCAAATCTGTTAAAAAAATCAGCAAAATGCTCACGTGAGCTAAGTTATGACCTAGAAAAGTTTCCCTATGATTAATTTCTCGTGAAATTTTTTTCATGGAATAGTGTATTTCTTTTAAAACAATAGATTTCAATCAGCAGTGTGGTAAAGTGGTAAAATGGCAAGTTCAGAGGAGGAAGGTTGTAGGTTCGATTCTCCCGATCCCAAAAATTTTGCAAAATTTTTTTGTTTTATTTTAAGCTGCCATAACTGGCTCTGGAATAAAATTTACGCAATCTAATTATGTTTTTGGGGAGTTTCTCGTTATGAATAGGCATTTTCCAGAATAAAAACAGACATTTAATTTT</canonical>
            <polymorphic>AAAAACTTTTTGATTCAGAAATTAAGAAATCATCACCGAATCAATCAGTTTTTTTAGTTCCAAATACTTCTCAAATTTTTGAAACATTCTTTTTATTTTTTGAAATATTATCTCCAAAAACATACATACCTCTCCATTCAACAAATCCTTCATACCATTTTTCTCTGCGTCTCCATTCCCAGCATTCTCTCTATTTCGATCACTATGAATCGTTCGAATTCTCAATGGACCAGTTCTCACAATTCGTCCTTTTTTATTCGTTTTTTTTGATAAAAAAGAGAAGGAAAAAATGAGCAAAAAGAAGAGGAAAAATGTCAGAAAAATTCGGTTCCAGCGATATTTTAAGACTTGCATTATTATCTGAAAATTTGAAGATAAAGTTTAAAATTTTAAAGGAATTTGGTTATTGAGAAATTCAGAAATTCAGAATAAAAACAGTCGAAAATTTAAAAGGAAATTATTGAGGGAATGAAAAAATCGGAAAGTCAAAAAATTTGAAMAAAATTTTTCAAATTTTGAAAGAGGTGAAAAAATGAAAAAAGTTATAAATAGTCCAAAAAGTTCTCAAGAAGTTCTTACAAGGCAGTTACTTGAAAGAGCAGGTTTAACTTTTTTTGAAATTTTGGGAGCAGATAGAAGAGCTTATGAGGAATCCAAATCTGTTAAAAAAATCAGCAAAATGCTCACGTGAGCTAAGTTATGACCTAGAAAAGTTTCCCTATGATTAATTTCTCGTGAAATTTTTTTCATGGAATAGTGTATTTCTTTTAAAACAATAGATTTCAATCAGCAGTGTGGTAAAGTGGTAAAATGGCAAGTTCAGAGGAGGAAGGTTGTAGGTTCGATTCTCCCGATCCCAAAAATTTTGCAAAATTTTTTTGTTTTATTTTAAGCTGCCATAACTGGCTCTGGAATAAAATTTACGCAATCTAATTATGTTTTTGGGGAGTTTCTCGTTATGAATAGGCATTTTCCAGAATAAAAACAGACATTTAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCCAGCGATATTTTAAGACT</pcr_primer_p1>
		<pcr_primer_p2>ACTTCTTGAGAACTTTTTGGACT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTCCAGCGATATTTTAAGACTTGCATTATTATCTGAAAATTTGAAGATAAAGTTTAAAATTTTAAAGGAATTTGGTTATTGAGAAATTCAGAAATTCAGAATAAAAACAGTCGAAAATTTAAAAGGAAATTATTGAGGGAATGAAAAAATCGGAAAGTCAAAAAATTTGAAAAAAATTTTTCAAATTTTGAAAGAGGTGAAAAAATGAAAAAAGTTATAAATAGTCCAAAAAGTTCTCAAGAAGT</canonical_amplicon>
		<polymorphic_amplicon>GTTCCAGCGATATTTTAAGACTTGCATTATTATCTGAAAATTTGAAGATAAAGTTTAAAATTTTAAAGGAATTTGGTTATTGAGAAATTCAGAAATTCAGAATAAAAACAGTCGAAAATTTAAAAGGAAATTATTGAGGGAATGAAAAAATCGGAAAGTCAAAAAATTTGAAMAAAATTTTTCAAATTTTGAAAGAGGTGAAAAAATGAAAAAAGTTATAAATAGTCCAAAAAGTTCTCAAGAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34276</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>783222</contig_pos>
        <strand>+</strand>
        <context>AAATTCCCAC[C/T]TTTTTTCAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCAC</left_flank>
        <right_flank>TTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACCCGGACTCGCTCCTTTTTCTCCATTCCAACAAATAGTTGCTTCCACATGGCGACGCCCATTTGACGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACAGATTGTAGAAAAATCAACATCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTCTTTTCTCACTGAAAACGATGCTCCGAAATCCCGCTTGCGCGCGTTGTTTAATCCACAAGAGCCGCCCATGTCATTTTTCAGCGGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTCGCCCGTCTCATTTTTGAGTGGTTTTTGGGTCAAAATAAGGGTTATAAAATGGTTTTTCGACTGAAAAGTGAAAGAAAATGCAAGAAAATCAATTTTTTGGACAATTTTTGACAGTGAAGTTTCGATTTTTTTGAATTTTAGGTCAATTTTCCAAAAAAAATTTCGAAAAAATTCAAATTTTGAGATTTTCGCCTCAATTTCAAAGATCCGTACCTTAAACGAGATTCCCAGATCCACAATTTTCAAGAATTTCGGCGAAAACGCTAGCGGAATATTCAGAATTTTCGAATTAACAGCGGTGACGAATCCAGGAGGGCATGATTCTGGATTTGAGAGTAAAGAGAAGATAAGAAATGCTTCAAATGAAGAGAGATAAGGTTCTTCTGGAAGTGGCTCTTCTGCTGTTTCCTGAGGCTCTTCAGAAGACCCTCTGA</canonical>
            <polymorphic>AAAACCCGGACTCGCTCCTTTTTCTCCATTCCAACAAATAGTTGCTTCCACATGGCGACGCCCATTTGACGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACAGATTGTAGAAAAATCAACATCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTCTTTTCTCACTGAAAACGATGCTCCGAAATCCCGCTTGCGCGCGTTGTTTAATCCACAAGAGCCGCCCATGTCATTTTTCAGCGGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACYTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTCGCCCGTCTCATTTTTGAGTGGTTTTTGGGTCAAAATAAGGGTTATAAAATGGTTTTTCGACTGAAAAGTGAAAGAAAATGCAAGAAAATCAATTTTTTGGACAATTTTTGACAGTGAAGTTTCGATTTTTTTGAATTTTAGGTCAATTTTCCAAAAAAAATTTCGAAAAAATTCAAATTTTGAGATTTTCGCCTCAATTTCAAAGATCCGTACCTTAAACGAGATTCCCAGATCCACAATTTTCAAGAATTTCGGCGAAAACGCTAGCGGAATATTCAGAATTTTCGAATTAACAGCGGTGACGAATCCAGGAGGGCATGATTCTGGATTTGAGAGTAAAGAGAAGATAAGAAATGCTTCAAATGAAGAGAGATAAGGTTCTTCTGGAAGTGGCTCTTCTGCTGTTTCCTGAGGCTCTTCAGAAGACCCTCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTTTAGGTTAAAATGAAGGT</pcr_primer_p1>
		<pcr_primer_p2>GACTCTTTTTGAGCGTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTC</canonical_amplicon>
		<polymorphic_amplicon>GGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACYTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34277</snp_id>
        <super_contig>c009001167.Contig4</super_contig>
        <contig_pos>783262</contig_pos>
        <strand></strand>
        <context>GGGTGCGCGT[T/C]GTTTAGCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGT</left_flank>
        <right_flank>GTTTAGCAAAACGCTCAAAAAGAGTCGCCCGTCTCATTTTTGAGTGGTTT</right_flank>
        <qual_score>33</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGCTTCCACATGGCGACGCCCATTTGACGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACAGATTGTAGAAAAATCAACATCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTCTTTTCTCACTGAAAACGATGCTCCGAAATCCCGCTTGCGCGCGTTGTTTAATCCACAAGAGCCGCCCATGTCATTTTTCAGCGGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTCGCCCGTCTCATTTTTGAGTGGTTTTTGGGTCAAAATAAGGGTTATAAAATGGTTTTTCGACTGAAAAGTGAAAGAAAATGCAAGAAAATCAATTTTTTGGACAATTTTTGACAGTGAAGTTTCGATTTTTTTGAATTTTAGGTCAATTTTCCAAAAAAAATTTCGAAAAAATTCAAATTTTGAGATTTTCGCCTCAATTTCAAAGATCCGTACCTTAAACGAGATTCCCAGATCCACAATTTTCAAGAATTTCGGCGAAAACGCTAGCGGAATATTCAGAATTTTCGAATTAACAGCGGTGACGAATCCAGGAGGGCATGATTCTGGATTTGAGAGTAAAGAGAAGATAAGAAATGCTTCAAATGAAGAGAGATAAGGTTCTTCTGGAAGTGGCTCTTCTGCTGTTTCCTGAGGCTCTTCAGAAGACCCTCTGACGTCTTCTGGGCCTTCCTCATTTTTCTCAGAATCCTCATT</canonical>
            <polymorphic>GTTGCTTCCACATGGCGACGCCCATTTGACGAATATTGGCATCTGGAGACCAGAAGCAGTGACGCGCCACGTGGATTAGCGCCGGAAGATGGGTCGTGGAGAATTTCTGGAAAACAGATTGTAGAAAAATCAACATCAAATTCGTTTTAGGTCCCAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTCTTTTCTCACTGAAAACGATGCTCCGAAATCCCGCTTGCGCGCGTTGTTTAATCCACAAGAGCCGCCCATGTCATTTTTCAGCGGTTTTTAGGTTAAAATGAAGGTTTCCGAATGGTTTTTCGACTGAAAATTGGATGAAAATGCAAGAAAATCGAATATTTCGCGAAAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTYGTTTAGCAAAACGCTCAAAAAGAGTCGCCCGTCTCATTTTTGAGTGGTTTTTGGGTCAAAATAAGGGTTATAAAATGGTTTTTCGACTGAAAAGTGAAAGAAAATGCAAGAAAATCAATTTTTTGGACAATTTTTGACAGTGAAGTTTCGATTTTTTTGAATTTTAGGTCAATTTTCCAAAAAAAATTTCGAAAAAATTCAAATTTTGAGATTTTCGCCTCAATTTCAAAGATCCGTACCTTAAACGAGATTCCCAGATCCACAATTTTCAAGAATTTCGGCGAAAACGCTAGCGGAATATTCAGAATTTTCGAATTAACAGCGGTGACGAATCCAGGAGGGCATGATTCTGGATTTGAGAGTAAAGAGAAGATAAGAAATGCTTCAAATGAAGAGAGATAAGGTTCTTCTGGAAGTGGCTCTTCTGCTGTTTCCTGAGGCTCTTCAGAAGACCCTCTGACGTCTTCTGGGCCTTCCTCATTTTTCTCAGAATCCTCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCAAGAAAACAGGTTCC</pcr_primer_p1>
		<pcr_primer_p2>TCTTGCATTTTCTTTCACTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTTGTTTAGCAAAACGCTCAAAAAGAGTCGCCCGTCTCATTTTTGAGTGGTTTTTGGGTCAAAATAAGGGTTATAAAATGGTTTTTCGACTGAAAAGTGAAAGAAAATGCAAGA</canonical_amplicon>
		<polymorphic_amplicon>AAATTCAAGAAAACAGGTTCCCAACCATTTTTCCTAGGCCAAATTCCCAAAATTGCTGTAAAATTGCGAAATTCGATTTTGAAATTTCAAATTCCCACTTTTTTTCAACAACGATGATCCGAAATAACGGGTGCGCGTYGTTTAGCAAAACGCTCAAAAAGAGTCGCCCGTCTCATTTTTGAGTGGTTTTTGGGTCAAAATAAGGGTTATAAAATGGTTTTTCGACTGAAAAGTGAAAGAAAATGCAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34278</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>6344</contig_pos>
        <strand></strand>
        <context>AATGGTCTGA[T/C]MWACTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAGCTATTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGA</left_flank>
        <right_flank>AAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATATCTGATGACCATCCTGATGGGTGAGAGCTGACGCCGTCCATCCAGAATCCACTGGCGGGGAGCACGATTTGGGGGTATGGACCAACGTGATTGAGCATCTGAAAGTAGGGGGAGTTAGAGAGAGTTACTATAGTGGAGCCCAAAAACAGACATGAATTGAAAACTTTGAATTCGCATAATTTTTTCTCTTAGGACCTGATTTTTGAGCTATTAAGAGTTTTTGACCAATTTTTTGAGCTATTGACACACTTTGATCCATTTTGCAAGCTATTAAAACATTCTGACCCATTTGTTGAGCTATTAAAATATTCTGACCCATTTGTTGAGCTATAAGAATATTCTGACTTATTTCTTGAGCTATTAGAACGTCCTGACCCATTTTGTGAGCTATTAGAACTTTTTGGTCTACTCTTTGAGCTATTAGAATTTTCTAACTCATGTTTTGAGCTATTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACCTATTTTACGAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATGTCCTGACCCATTTTCCGAGCTATTAGAACGTCCTGATCTATTTTTTGAGCTTTTAAAACAAGATGACCCATTTTCGGAGCTATTAGAATTTTCTAAAATATTTTGTGAGCTATTAGAATATCCTGACCCATTTTGTGAGCTATTAAAATCTCCTGACCCATTTTATGAGCTATTAGAATAGTCTGATAAACTTTTGGAGCTATTAGAATATGCTGAGCCATTCTGTGAGCTATTAGAATATCCTGGCCAATTTTTTGAGCTATAGAATAGTCTGATTAACATTTTGAGCTATTAC</canonical>
            <polymorphic>TGATATCTGATGACCATCCTGATGGGTGAGAGCTGACGCCGTCCATCCAGAATCCACTGGCGGGGAGCACGATTTGGGGGTATGGACCAACGTGATTGAGCATCTGAAAGTAGGGGGAGTTAGAGAGAGTTACTATAGTGGAGCCCAAAAACAGACATGAATTGAAAACTTTGAATTCGCATAATTTTTTCTCTTAGGACCTGATTTTTGAGCTATTAAGAGTTTTTGACCAATTTTTTGAGCTATTGACACACTTTGATCCATTTTGCAAGCTATTAAAACATTCTGACCCATTTGTTGAGCTATTAAAATATTCTGACCCATTTGTTGAGCTATAAGAATATTCTGACTTATTTCTTGAGCTATTAGAACGTCCTGACCCATTTTGTGAGCTATTAGAACTTTTTGGTCTACTCTTTGAGCTATTAGAATTTTCTAACTCATGTTTTGAGCTATTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGAYAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACCTATTTTACGAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATGTCCTGACCCATTTTCCGAGCTATTAGAACGTCCTGATCTATTTTTTGAGCTTTTAAAACAAGATGACCCATTTTCGGAGCTATTAGAATTTTCTAAAATATTTTGTGAGCTATTAGAATATCCTGACCCATTTTGTGAGCTATTAAAATCTCCTGACCCATTTTATGAGCTATTAGAATAGTCTGATAAACTTTTGGAGCTATTAGAATATGCTGAGCCATTCTGTGAGCTATTAGAATATCCTGGCCAATTTTTTGAGCTATAGAATAGTCTGATTAACATTTTGAGCTATTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTCTGACCCATTTGTTGAG</pcr_primer_p1>
		<pcr_primer_p2>TCAAGACGTTCTAATAACTCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATTCTGACCCATTTGTTGAGCTATAAGAATATTCTGACTTATTTCTTGAGCTATTAGAACGTCCTGACCCATTTTGTGAGCTATTAGAACTTTTTGGTCTACTCTTTGAGCTATTAGAATTTTCTAACTCATGTTTTGAGCTATTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGA</canonical_amplicon>
		<polymorphic_amplicon>ATATTCTGACCCATTTGTTGAGCTATAAGAATATTCTGACTTATTTCTTGAGCTATTAGAACGTCCTGACCCATTTTGTGAGCTATTAGAACTTTTTGGTCTACTCTTTGAGCTATTAGAATTTTCTAACTCATGTTTTGAGCTATTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGAYAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34279</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>6345</contig_pos>
        <strand></strand>
        <context>ATGGTCTGAY[A/C]WACTTTTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGCTATTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGAT</left_flank>
        <right_flank>AACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATATCTGATGACCATCCTGATGGGTGAGAGCTGACGCCGTCCATCCAGAATCCACTGGCGGGGAGCACGATTTGGGGGTATGGACCAACGTGATTGAGCATCTGAAAGTAGGGGGAGTTAGAGAGAGTTACTATAGTGGAGCCCAAAAACAGACATGAATTGAAAACTTTGAATTCGCATAATTTTTTCTCTTAGGACCTGATTTTTGAGCTATTAAGAGTTTTTGACCAATTTTTTGAGCTATTGACACACTTTGATCCATTTTGCAAGCTATTAAAACATTCTGACCCATTTGTTGAGCTATTAAAATATTCTGACCCATTTGTTGAGCTATAAGAATATTCTGACTTATTTCTTGAGCTATTAGAACGTCCTGACCCATTTTGTGAGCTATTAGAACTTTTTGGTCTACTCTTTGAGCTATTAGAATTTTCTAACTCATGTTTTGAGCTATTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACCTATTTTACGAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATGTCCTGACCCATTTTCCGAGCTATTAGAACGTCCTGATCTATTTTTTGAGCTTTTAAAACAAGATGACCCATTTTCGGAGCTATTAGAATTTTCTAAAATATTTTGTGAGCTATTAGAATATCCTGACCCATTTTGTGAGCTATTAAAATCTCCTGACCCATTTTATGAGCTATTAGAATAGTCTGATAAACTTTTGGAGCTATTAGAATATGCTGAGCCATTCTGTGAGCTATTAGAATATCCTGGCCAATTTTTTGAGCTATAGAATAGTCTGATTAACATTTTGAGCTATTACA</canonical>
            <polymorphic>GATATCTGATGACCATCCTGATGGGTGAGAGCTGACGCCGTCCATCCAGAATCCACTGGCGGGGAGCACGATTTGGGGGTATGGACCAACGTGATTGAGCATCTGAAAGTAGGGGGAGTTAGAGAGAGTTACTATAGTGGAGCCCAAAAACAGACATGAATTGAAAACTTTGAATTCGCATAATTTTTTCTCTTAGGACCTGATTTTTGAGCTATTAAGAGTTTTTGACCAATTTTTTGAGCTATTGACACACTTTGATCCATTTTGCAAGCTATTAAAACATTCTGACCCATTTGTTGAGCTATTAAAATATTCTGACCCATTTGTTGAGCTATAAGAATATTCTGACTTATTTCTTGAGCTATTAGAACGTCCTGACCCATTTTGTGAGCTATTAGAACTTTTTGGTCTACTCTTTGAGCTATTAGAATTTTCTAACTCATGTTTTGAGCTATTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATMAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACCTATTTTACGAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATGTCCTGACCCATTTTCCGAGCTATTAGAACGTCCTGATCTATTTTTTGAGCTTTTAAAACAAGATGACCCATTTTCGGAGCTATTAGAATTTTCTAAAATATTTTGTGAGCTATTAGAATATCCTGACCCATTTTGTGAGCTATTAAAATCTCCTGACCCATTTTATGAGCTATTAGAATAGTCTGATAAACTTTTGGAGCTATTAGAATATGCTGAGCCATTCTGTGAGCTATTAGAATATCCTGGCCAATTTTTTGAGCTATAGAATAGTCTGATTAACATTTTGAGCTATTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTCTGACCCATTTGTTGAG</pcr_primer_p1>
		<pcr_primer_p2>TCAAGACGTTCTAATAACTCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATTCTGACCCATTTGTTGAGCTATAAGAATATTCTGACTTATTTCTTGAGCTATTAGAACGTCCTGACCCATTTTGTGAGCTATTAGAACTTTTTGGTCTACTCTTTGAGCTATTAGAATTTTCTAACTCATGTTTTGAGCTATTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGA</canonical_amplicon>
		<polymorphic_amplicon>ATATTCTGACCCATTTGTTGAGCTATAAGAATATTCTGACTTATTTCTTGAGCTATTAGAACGTCCTGACCCATTTTGTGAGCTATTAGAACTTTTTGGTCTACTCTTTGAGCTATTAGAATTTTCTAACTCATGTTTTGAGCTATTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATMAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34280</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>6346</contig_pos>
        <strand></strand>
        <context>TGGTCTGAYM[A/T]ACTTTTTGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTATTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATA</left_flank>
        <right_flank>ACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATCTGATGACCATCCTGATGGGTGAGAGCTGACGCCGTCCATCCAGAATCCACTGGCGGGGAGCACGATTTGGGGGTATGGACCAACGTGATTGAGCATCTGAAAGTAGGGGGAGTTAGAGAGAGTTACTATAGTGGAGCCCAAAAACAGACATGAATTGAAAACTTTGAATTCGCATAATTTTTTCTCTTAGGACCTGATTTTTGAGCTATTAAGAGTTTTTGACCAATTTTTTGAGCTATTGACACACTTTGATCCATTTTGCAAGCTATTAAAACATTCTGACCCATTTGTTGAGCTATTAAAATATTCTGACCCATTTGTTGAGCTATAAGAATATTCTGACTTATTTCTTGAGCTATTAGAACGTCCTGACCCATTTTGTGAGCTATTAGAACTTTTTGGTCTACTCTTTGAGCTATTAGAATTTTCTAACTCATGTTTTGAGCTATTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACCTATTTTACGAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATGTCCTGACCCATTTTCCGAGCTATTAGAACGTCCTGATCTATTTTTTGAGCTTTTAAAACAAGATGACCCATTTTCGGAGCTATTAGAATTTTCTAAAATATTTTGTGAGCTATTAGAATATCCTGACCCATTTTGTGAGCTATTAAAATCTCCTGACCCATTTTATGAGCTATTAGAATAGTCTGATAAACTTTTGGAGCTATTAGAATATGCTGAGCCATTCTGTGAGCTATTAGAATATCCTGGCCAATTTTTTGAGCTATAGAATAGTCTGATTAACATTTTGAGCTATTACAA</canonical>
            <polymorphic>ATATCTGATGACCATCCTGATGGGTGAGAGCTGACGCCGTCCATCCAGAATCCACTGGCGGGGAGCACGATTTGGGGGTATGGACCAACGTGATTGAGCATCTGAAAGTAGGGGGAGTTAGAGAGAGTTACTATAGTGGAGCCCAAAAACAGACATGAATTGAAAACTTTGAATTCGCATAATTTTTTCTCTTAGGACCTGATTTTTGAGCTATTAAGAGTTTTTGACCAATTTTTTGAGCTATTGACACACTTTGATCCATTTTGCAAGCTATTAAAACATTCTGACCCATTTGTTGAGCTATTAAAATATTCTGACCCATTTGTTGAGCTATAAGAATATTCTGACTTATTTCTTGAGCTATTAGAACGTCCTGACCCATTTTGTGAGCTATTAGAACTTTTTGGTCTACTCTTTGAGCTATTAGAATTTTCTAACTCATGTTTTGAGCTATTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAWACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACCTATTTTACGAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATGTCCTGACCCATTTTCCGAGCTATTAGAACGTCCTGATCTATTTTTTGAGCTTTTAAAACAAGATGACCCATTTTCGGAGCTATTAGAATTTTCTAAAATATTTTGTGAGCTATTAGAATATCCTGACCCATTTTGTGAGCTATTAAAATCTCCTGACCCATTTTATGAGCTATTAGAATAGTCTGATAAACTTTTGGAGCTATTAGAATATGCTGAGCCATTCTGTGAGCTATTAGAATATCCTGGCCAATTTTTTGAGCTATAGAATAGTCTGATTAACATTTTGAGCTATTACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTCTGACCCATTTGTTGAG</pcr_primer_p1>
		<pcr_primer_p2>TCAAGACGTTCTAATAACTCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATTCTGACCCATTTGTTGAGCTATAAGAATATTCTGACTTATTTCTTGAGCTATTAGAACGTCCTGACCCATTTTGTGAGCTATTAGAACTTTTTGGTCTACTCTTTGAGCTATTAGAATTTTCTAACTCATGTTTTGAGCTATTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGA</canonical_amplicon>
		<polymorphic_amplicon>ATATTCTGACCCATTTGTTGAGCTATAAGAATATTCTGACTTATTTCTTGAGCTATTAGAACGTCCTGACCCATTTTGTGAGCTATTAGAACTTTTTGGTCTACTCTTTGAGCTATTAGAATTTTCTAACTCATGTTTTGAGCTATTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAWACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34281</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>6425</contig_pos>
        <strand></strand>
        <context>TGAGCTATTA[G/A]ATCACTCTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTA</left_flank>
        <right_flank>ATCACTCTGACCTATTTTACGAGCTATTAGAACGTCCTGACTCATTCTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGACCAACGTGATTGAGCATCTGAAAGTAGGGGGAGTTAGAGAGAGTTACTATAGTGGAGCCCAAAAACAGACATGAATTGAAAACTTTGAATTCGCATAATTTTTTCTCTTAGGACCTGATTTTTGAGCTATTAAGAGTTTTTGACCAATTTTTTGAGCTATTGACACACTTTGATCCATTTTGCAAGCTATTAAAACATTCTGACCCATTTGTTGAGCTATTAAAATATTCTGACCCATTTGTTGAGCTATAAGAATATTCTGACTTATTTCTTGAGCTATTAGAACGTCCTGACCCATTTTGTGAGCTATTAGAACTTTTTGGTCTACTCTTTGAGCTATTAGAATTTTCTAACTCATGTTTTGAGCTATTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACCTATTTTACGAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATGTCCTGACCCATTTTCCGAGCTATTAGAACGTCCTGATCTATTTTTTGAGCTTTTAAAACAAGATGACCCATTTTCGGAGCTATTAGAATTTTCTAAAATATTTTGTGAGCTATTAGAATATCCTGACCCATTTTGTGAGCTATTAAAATCTCCTGACCCATTTTATGAGCTATTAGAATAGTCTGATAAACTTTTGGAGCTATTAGAATATGCTGAGCCATTCTGTGAGCTATTAGAATATCCTGGCCAATTTTTTGAGCTATAGAATAGTCTGATTAACATTTTGAGCTATTACAACATTGTGACCCATTTTTTGACCGATTATAAAACCCTGGTCCATTATTCAAGCAATTAGAATGTCCTGACTTATTTTTTG</canonical>
            <polymorphic>ATGGACCAACGTGATTGAGCATCTGAAAGTAGGGGGAGTTAGAGAGAGTTACTATAGTGGAGCCCAAAAACAGACATGAATTGAAAACTTTGAATTCGCATAATTTTTTCTCTTAGGACCTGATTTTTGAGCTATTAAGAGTTTTTGACCAATTTTTTGAGCTATTGACACACTTTGATCCATTTTGCAAGCTATTAAAACATTCTGACCCATTTGTTGAGCTATTAAAATATTCTGACCCATTTGTTGAGCTATAAGAATATTCTGACTTATTTCTTGAGCTATTAGAACGTCCTGACCCATTTTGTGAGCTATTAGAACTTTTTGGTCTACTCTTTGAGCTATTAGAATTTTCTAACTCATGTTTTGAGCTATTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTARATCACTCTGACCTATTTTACGAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATGTCCTGACCCATTTTCCGAGCTATTAGAACGTCCTGATCTATTTTTTGAGCTTTTAAAACAAGATGACCCATTTTCGGAGCTATTAGAATTTTCTAAAATATTTTGTGAGCTATTAGAATATCCTGACCCATTTTGTGAGCTATTAAAATCTCCTGACCCATTTTATGAGCTATTAGAATAGTCTGATAAACTTTTGGAGCTATTAGAATATGCTGAGCCATTCTGTGAGCTATTAGAATATCCTGGCCAATTTTTTGAGCTATAGAATAGTCTGATTAACATTTTGAGCTATTACAACATTGTGACCCATTTTTTGACCGATTATAAAACCCTGGTCCATTATTCAAGCAATTAGAATGTCCTGACTTATTTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>342 323 176 159</canonical_bands>
                <polymorphic_bands>482 342 176</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGAATACTCTGACCCATTTTG</pcr_primer_p1>
		<pcr_primer_p2>CATTCTAATAGCTTGAATGATAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACCTATTTTACGAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATG</canonical_amplicon>
		<polymorphic_amplicon>TTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTARATCACTCTGACCTATTTTACGAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34282</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>6438</contig_pos>
        <strand></strand>
        <context>CACTCTGACC[T/C]ATTTTMYGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACC</left_flank>
        <right_flank>ATTTTACGAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAAT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGAGCATCTGAAAGTAGGGGGAGTTAGAGAGAGTTACTATAGTGGAGCCCAAAAACAGACATGAATTGAAAACTTTGAATTCGCATAATTTTTTCTCTTAGGACCTGATTTTTGAGCTATTAAGAGTTTTTGACCAATTTTTTGAGCTATTGACACACTTTGATCCATTTTGCAAGCTATTAAAACATTCTGACCCATTTGTTGAGCTATTAAAATATTCTGACCCATTTGTTGAGCTATAAGAATATTCTGACTTATTTCTTGAGCTATTAGAACGTCCTGACCCATTTTGTGAGCTATTAGAACTTTTTGGTCTACTCTTTGAGCTATTAGAATTTTCTAACTCATGTTTTGAGCTATTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACCTATTTTACGAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATGTCCTGACCCATTTTCCGAGCTATTAGAACGTCCTGATCTATTTTTTGAGCTTTTAAAACAAGATGACCCATTTTCGGAGCTATTAGAATTTTCTAAAATATTTTGTGAGCTATTAGAATATCCTGACCCATTTTGTGAGCTATTAAAATCTCCTGACCCATTTTATGAGCTATTAGAATAGTCTGATAAACTTTTGGAGCTATTAGAATATGCTGAGCCATTCTGTGAGCTATTAGAATATCCTGGCCAATTTTTTGAGCTATAGAATAGTCTGATTAACATTTTGAGCTATTACAACATTGTGACCCATTTTTTGACCGATTATAAAACCCTGGTCCATTATTCAAGCAATTAGAATGTCCTGACTTATTTTTTGACCTATTAGAACA</canonical>
            <polymorphic>ATTGAGCATCTGAAAGTAGGGGGAGTTAGAGAGAGTTACTATAGTGGAGCCCAAAAACAGACATGAATTGAAAACTTTGAATTCGCATAATTTTTTCTCTTAGGACCTGATTTTTGAGCTATTAAGAGTTTTTGACCAATTTTTTGAGCTATTGACACACTTTGATCCATTTTGCAAGCTATTAAAACATTCTGACCCATTTGTTGAGCTATTAAAATATTCTGACCCATTTGTTGAGCTATAAGAATATTCTGACTTATTTCTTGAGCTATTAGAACGTCCTGACCCATTTTGTGAGCTATTAGAACTTTTTGGTCTACTCTTTGAGCTATTAGAATTTTCTAACTCATGTTTTGAGCTATTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACCYATTTTACGAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATGTCCTGACCCATTTTCCGAGCTATTAGAACGTCCTGATCTATTTTTTGAGCTTTTAAAACAAGATGACCCATTTTCGGAGCTATTAGAATTTTCTAAAATATTTTGTGAGCTATTAGAATATCCTGACCCATTTTGTGAGCTATTAAAATCTCCTGACCCATTTTATGAGCTATTAGAATAGTCTGATAAACTTTTGGAGCTATTAGAATATGCTGAGCCATTCTGTGAGCTATTAGAATATCCTGGCCAATTTTTTGAGCTATAGAATAGTCTGATTAACATTTTGAGCTATTACAACATTGTGACCCATTTTTTGACCGATTATAAAACCCTGGTCCATTATTCAAGCAATTAGAATGTCCTGACTTATTTTTTGACCTATTAGAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGAATACTCTGACCCATTTTG</pcr_primer_p1>
		<pcr_primer_p2>CATTCTAATAGCTTGAATGATAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACCTATTTTACGAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATG</canonical_amplicon>
		<polymorphic_amplicon>TTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACCYATTTTACGAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34283</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>6444</contig_pos>
        <strand></strand>
        <context>GACCYATTTT[A/C]YGAGCTATTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACCTATTTT</left_flank>
        <right_flank>CGAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAATATTCTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCTGAAAGTAGGGGGAGTTAGAGAGAGTTACTATAGTGGAGCCCAAAAACAGACATGAATTGAAAACTTTGAATTCGCATAATTTTTTCTCTTAGGACCTGATTTTTGAGCTATTAAGAGTTTTTGACCAATTTTTTGAGCTATTGACACACTTTGATCCATTTTGCAAGCTATTAAAACATTCTGACCCATTTGTTGAGCTATTAAAATATTCTGACCCATTTGTTGAGCTATAAGAATATTCTGACTTATTTCTTGAGCTATTAGAACGTCCTGACCCATTTTGTGAGCTATTAGAACTTTTTGGTCTACTCTTTGAGCTATTAGAATTTTCTAACTCATGTTTTGAGCTATTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACCTATTTTACGAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATGTCCTGACCCATTTTCCGAGCTATTAGAACGTCCTGATCTATTTTTTGAGCTTTTAAAACAAGATGACCCATTTTCGGAGCTATTAGAATTTTCTAAAATATTTTGTGAGCTATTAGAATATCCTGACCCATTTTGTGAGCTATTAAAATCTCCTGACCCATTTTATGAGCTATTAGAATAGTCTGATAAACTTTTGGAGCTATTAGAATATGCTGAGCCATTCTGTGAGCTATTAGAATATCCTGGCCAATTTTTTGAGCTATAGAATAGTCTGATTAACATTTTGAGCTATTACAACATTGTGACCCATTTTTTGACCGATTATAAAACCCTGGTCCATTATTCAAGCAATTAGAATGTCCTGACTTATTTTTTGACCTATTAGAACATTGGGA</canonical>
            <polymorphic>CATCTGAAAGTAGGGGGAGTTAGAGAGAGTTACTATAGTGGAGCCCAAAAACAGACATGAATTGAAAACTTTGAATTCGCATAATTTTTTCTCTTAGGACCTGATTTTTGAGCTATTAAGAGTTTTTGACCAATTTTTTGAGCTATTGACACACTTTGATCCATTTTGCAAGCTATTAAAACATTCTGACCCATTTGTTGAGCTATTAAAATATTCTGACCCATTTGTTGAGCTATAAGAATATTCTGACTTATTTCTTGAGCTATTAGAACGTCCTGACCCATTTTGTGAGCTATTAGAACTTTTTGGTCTACTCTTTGAGCTATTAGAATTTTCTAACTCATGTTTTGAGCTATTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACCTATTTTMCGAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATGTCCTGACCCATTTTCCGAGCTATTAGAACGTCCTGATCTATTTTTTGAGCTTTTAAAACAAGATGACCCATTTTCGGAGCTATTAGAATTTTCTAAAATATTTTGTGAGCTATTAGAATATCCTGACCCATTTTGTGAGCTATTAAAATCTCCTGACCCATTTTATGAGCTATTAGAATAGTCTGATAAACTTTTGGAGCTATTAGAATATGCTGAGCCATTCTGTGAGCTATTAGAATATCCTGGCCAATTTTTTGAGCTATAGAATAGTCTGATTAACATTTTGAGCTATTACAACATTGTGACCCATTTTTTGACCGATTATAAAACCCTGGTCCATTATTCAAGCAATTAGAATGTCCTGACTTATTTTTTGACCTATTAGAACATTGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGAATACTCTGACCCATTTTG</pcr_primer_p1>
		<pcr_primer_p2>CATTCTAATAGCTTGAATGATAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACCTATTTTACGAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATG</canonical_amplicon>
		<polymorphic_amplicon>TTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACCTATTTTMCGAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34284</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>6445</contig_pos>
        <strand></strand>
        <context>ACCYATTTTM[C/T]GAGCTATTAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACCTATTTTA</left_flank>
        <right_flank>GAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAATATTCTTA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTGAAAGTAGGGGGAGTTAGAGAGAGTTACTATAGTGGAGCCCAAAAACAGACATGAATTGAAAACTTTGAATTCGCATAATTTTTTCTCTTAGGACCTGATTTTTGAGCTATTAAGAGTTTTTGACCAATTTTTTGAGCTATTGACACACTTTGATCCATTTTGCAAGCTATTAAAACATTCTGACCCATTTGTTGAGCTATTAAAATATTCTGACCCATTTGTTGAGCTATAAGAATATTCTGACTTATTTCTTGAGCTATTAGAACGTCCTGACCCATTTTGTGAGCTATTAGAACTTTTTGGTCTACTCTTTGAGCTATTAGAATTTTCTAACTCATGTTTTGAGCTATTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACCTATTTTACGAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATGTCCTGACCCATTTTCCGAGCTATTAGAACGTCCTGATCTATTTTTTGAGCTTTTAAAACAAGATGACCCATTTTCGGAGCTATTAGAATTTTCTAAAATATTTTGTGAGCTATTAGAATATCCTGACCCATTTTGTGAGCTATTAAAATCTCCTGACCCATTTTATGAGCTATTAGAATAGTCTGATAAACTTTTGGAGCTATTAGAATATGCTGAGCCATTCTGTGAGCTATTAGAATATCCTGGCCAATTTTTTGAGCTATAGAATAGTCTGATTAACATTTTGAGCTATTACAACATTGTGACCCATTTTTTGACCGATTATAAAACCCTGGTCCATTATTCAAGCAATTAGAATGTCCTGACTTATTTTTTGACCTATTAGAACATTGGGAC</canonical>
            <polymorphic>ATCTGAAAGTAGGGGGAGTTAGAGAGAGTTACTATAGTGGAGCCCAAAAACAGACATGAATTGAAAACTTTGAATTCGCATAATTTTTTCTCTTAGGACCTGATTTTTGAGCTATTAAGAGTTTTTGACCAATTTTTTGAGCTATTGACACACTTTGATCCATTTTGCAAGCTATTAAAACATTCTGACCCATTTGTTGAGCTATTAAAATATTCTGACCCATTTGTTGAGCTATAAGAATATTCTGACTTATTTCTTGAGCTATTAGAACGTCCTGACCCATTTTGTGAGCTATTAGAACTTTTTGGTCTACTCTTTGAGCTATTAGAATTTTCTAACTCATGTTTTGAGCTATTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACCTATTTTAYGAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATGTCCTGACCCATTTTCCGAGCTATTAGAACGTCCTGATCTATTTTTTGAGCTTTTAAAACAAGATGACCCATTTTCGGAGCTATTAGAATTTTCTAAAATATTTTGTGAGCTATTAGAATATCCTGACCCATTTTGTGAGCTATTAAAATCTCCTGACCCATTTTATGAGCTATTAGAATAGTCTGATAAACTTTTGGAGCTATTAGAATATGCTGAGCCATTCTGTGAGCTATTAGAATATCCTGGCCAATTTTTTGAGCTATAGAATAGTCTGATTAACATTTTGAGCTATTACAACATTGTGACCCATTTTTTGACCGATTATAAAACCCTGGTCCATTATTCAAGCAATTAGAATGTCCTGACTTATTTTTTGACCTATTAGAACATTGGGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGAATACTCTGACCCATTTTG</pcr_primer_p1>
		<pcr_primer_p2>CATTCTAATAGCTTGAATGATAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACCTATTTTACGAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATG</canonical_amplicon>
		<polymorphic_amplicon>TTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACCTATTTTAYGAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34285</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>6479</contig_pos>
        <strand></strand>
        <context>ATTCTTTCAG[T/C]TATAAGAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACTCTGACCTATTTTACGAGCTATTAGAACGTCCTGACTCATTCTTTCAG</left_flank>
        <right_flank>TATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGTGGAGCCCAAAAACAGACATGAATTGAAAACTTTGAATTCGCATAATTTTTTCTCTTAGGACCTGATTTTTGAGCTATTAAGAGTTTTTGACCAATTTTTTGAGCTATTGACACACTTTGATCCATTTTGCAAGCTATTAAAACATTCTGACCCATTTGTTGAGCTATTAAAATATTCTGACCCATTTGTTGAGCTATAAGAATATTCTGACTTATTTCTTGAGCTATTAGAACGTCCTGACCCATTTTGTGAGCTATTAGAACTTTTTGGTCTACTCTTTGAGCTATTAGAATTTTCTAACTCATGTTTTGAGCTATTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACCTATTTTACGAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATGTCCTGACCCATTTTCCGAGCTATTAGAACGTCCTGATCTATTTTTTGAGCTTTTAAAACAAGATGACCCATTTTCGGAGCTATTAGAATTTTCTAAAATATTTTGTGAGCTATTAGAATATCCTGACCCATTTTGTGAGCTATTAAAATCTCCTGACCCATTTTATGAGCTATTAGAATAGTCTGATAAACTTTTGGAGCTATTAGAATATGCTGAGCCATTCTGTGAGCTATTAGAATATCCTGGCCAATTTTTTGAGCTATAGAATAGTCTGATTAACATTTTGAGCTATTACAACATTGTGACCCATTTTTTGACCGATTATAAAACCCTGGTCCATTATTCAAGCAATTAGAATGTCCTGACTTATTTTTTGACCTATTAGAACATTGGGACCCATTTTTTGAGCTATTAGAACGTCCTGACTCAT</canonical>
            <polymorphic>TAGTGGAGCCCAAAAACAGACATGAATTGAAAACTTTGAATTCGCATAATTTTTTCTCTTAGGACCTGATTTTTGAGCTATTAAGAGTTTTTGACCAATTTTTTGAGCTATTGACACACTTTGATCCATTTTGCAAGCTATTAAAACATTCTGACCCATTTGTTGAGCTATTAAAATATTCTGACCCATTTGTTGAGCTATAAGAATATTCTGACTTATTTCTTGAGCTATTAGAACGTCCTGACCCATTTTGTGAGCTATTAGAACTTTTTGGTCTACTCTTTGAGCTATTAGAATTTTCTAACTCATGTTTTGAGCTATTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACCTATTTTACGAGCTATTAGAACGTCCTGACTCATTCTTTCAGYTATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATGTCCTGACCCATTTTCCGAGCTATTAGAACGTCCTGATCTATTTTTTGAGCTTTTAAAACAAGATGACCCATTTTCGGAGCTATTAGAATTTTCTAAAATATTTTGTGAGCTATTAGAATATCCTGACCCATTTTGTGAGCTATTAAAATCTCCTGACCCATTTTATGAGCTATTAGAATAGTCTGATAAACTTTTGGAGCTATTAGAATATGCTGAGCCATTCTGTGAGCTATTAGAATATCCTGGCCAATTTTTTGAGCTATAGAATAGTCTGATTAACATTTTGAGCTATTACAACATTGTGACCCATTTTTTGACCGATTATAAAACCCTGGTCCATTATTCAAGCAATTAGAATGTCCTGACTTATTTTTTGACCTATTAGAACATTGGGACCCATTTTTTGAGCTATTAGAACGTCCTGACTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 392 106</canonical_bands>
                <polymorphic_bands>894 106</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGAATACTCTGACCCATTTTG</pcr_primer_p1>
		<pcr_primer_p2>CATTCTAATAGCTTGAATGATAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACCTATTTTACGAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATG</canonical_amplicon>
		<polymorphic_amplicon>TTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACCTATTTTACGAGCTATTAGAACGTCCTGACTCATTCTTTCAGYTATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34286</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>6558</contig_pos>
        <strand></strand>
        <context>TGTCCTGACC[C/T]ATTTTMCGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATGTCCTGACC</left_flank>
        <right_flank>ATTTTCCGAGCTATTAGAACGTCCTGATCTATTTTTTGAGCTTTTAAAAC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAAGAGTTTTTGACCAATTTTTTGAGCTATTGACACACTTTGATCCATTTTGCAAGCTATTAAAACATTCTGACCCATTTGTTGAGCTATTAAAATATTCTGACCCATTTGTTGAGCTATAAGAATATTCTGACTTATTTCTTGAGCTATTAGAACGTCCTGACCCATTTTGTGAGCTATTAGAACTTTTTGGTCTACTCTTTGAGCTATTAGAATTTTCTAACTCATGTTTTGAGCTATTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACCTATTTTACGAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATGTCCTGACCCATTTTCCGAGCTATTAGAACGTCCTGATCTATTTTTTGAGCTTTTAAAACAAGATGACCCATTTTCGGAGCTATTAGAATTTTCTAAAATATTTTGTGAGCTATTAGAATATCCTGACCCATTTTGTGAGCTATTAAAATCTCCTGACCCATTTTATGAGCTATTAGAATAGTCTGATAAACTTTTGGAGCTATTAGAATATGCTGAGCCATTCTGTGAGCTATTAGAATATCCTGGCCAATTTTTTGAGCTATAGAATAGTCTGATTAACATTTTGAGCTATTACAACATTGTGACCCATTTTTTGACCGATTATAAAACCCTGGTCCATTATTCAAGCAATTAGAATGTCCTGACTTATTTTTTGACCTATTAGAACATTGGGACCCATTTTTTGAGCTATTAGAACGTCCTGACTCATTCTTTCAGATATTAGAATTTCCAGAATTTTGTACTTTTCATTCTTTTTTGTATTCTCCTCCAAATTTCATCCTCAACCA</canonical>
            <polymorphic>ATTAAGAGTTTTTGACCAATTTTTTGAGCTATTGACACACTTTGATCCATTTTGCAAGCTATTAAAACATTCTGACCCATTTGTTGAGCTATTAAAATATTCTGACCCATTTGTTGAGCTATAAGAATATTCTGACTTATTTCTTGAGCTATTAGAACGTCCTGACCCATTTTGTGAGCTATTAGAACTTTTTGGTCTACTCTTTGAGCTATTAGAATTTTCTAACTCATGTTTTGAGCTATTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACCTATTTTACGAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATGTCCTGACCYATTTTCCGAGCTATTAGAACGTCCTGATCTATTTTTTGAGCTTTTAAAACAAGATGACCCATTTTCGGAGCTATTAGAATTTTCTAAAATATTTTGTGAGCTATTAGAATATCCTGACCCATTTTGTGAGCTATTAAAATCTCCTGACCCATTTTATGAGCTATTAGAATAGTCTGATAAACTTTTGGAGCTATTAGAATATGCTGAGCCATTCTGTGAGCTATTAGAATATCCTGGCCAATTTTTTGAGCTATAGAATAGTCTGATTAACATTTTGAGCTATTACAACATTGTGACCCATTTTTTGACCGATTATAAAACCCTGGTCCATTATTCAAGCAATTAGAATGTCCTGACTTATTTTTTGACCTATTAGAACATTGGGACCCATTTTTTGAGCTATTAGAACGTCCTGACTCATTCTTTCAGATATTAGAATTTCCAGAATTTTGTACTTTTCATTCTTTTTTGTATTCTCCTCCAAATTTCATCCTCAACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCGAGCTATTAGAAAATCCT</pcr_primer_p1>
		<pcr_primer_p2>AGCTCCAAAAGTTTATCAGACTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATGTCCTGACCCATTTTCCGAGCTATTAGAACGTCCTGATCTATTTTTTGAGCTTTTAAAACAAGATGACCCATTTTCGGAGCTATTAGAATTTTCTAAAATATTTTGTGAGCTATTAGAATATCCTGACCCATTTTGTGAGCTATTAAAATCTCCTGACCCATTTTATGAGCTATTAGAATAGTCTGATAAACTTTTGGAGCT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATGTCCTGACCYATTTTCCGAGCTATTAGAACGTCCTGATCTATTTTTTGAGCTTTTAAAACAAGATGACCCATTTTCGGAGCTATTAGAATTTTCTAAAATATTTTGTGAGCTATTAGAATATCCTGACCCATTTTGTGAGCTATTAAAATCTCCTGACCCATTTTATGAGCTATTAGAATAGTCTGATAAACTTTTGGAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34287</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>6564</contig_pos>
        <strand></strand>
        <context>GACCYATTTT[C/A]CGAGCTATTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AGAAAATCCTGACCTATCATTCAAGCTATTAGAATGTCCTGACCCATTTT</left_flank>
        <right_flank>CGAGCTATTAGAACGTCCTGATCTATTTTTTGAGCTTTTAAAACAAGATG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTTTTGACCAATTTTTTGAGCTATTGACACACTTTGATCCATTTTGCAAGCTATTAAAACATTCTGACCCATTTGTTGAGCTATTAAAATATTCTGACCCATTTGTTGAGCTATAAGAATATTCTGACTTATTTCTTGAGCTATTAGAACGTCCTGACCCATTTTGTGAGCTATTAGAACTTTTTGGTCTACTCTTTGAGCTATTAGAATTTTCTAACTCATGTTTTGAGCTATTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACCTATTTTACGAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATGTCCTGACCCATTTTCCGAGCTATTAGAACGTCCTGATCTATTTTTTGAGCTTTTAAAACAAGATGACCCATTTTCGGAGCTATTAGAATTTTCTAAAATATTTTGTGAGCTATTAGAATATCCTGACCCATTTTGTGAGCTATTAAAATCTCCTGACCCATTTTATGAGCTATTAGAATAGTCTGATAAACTTTTGGAGCTATTAGAATATGCTGAGCCATTCTGTGAGCTATTAGAATATCCTGGCCAATTTTTTGAGCTATAGAATAGTCTGATTAACATTTTGAGCTATTACAACATTGTGACCCATTTTTTGACCGATTATAAAACCCTGGTCCATTATTCAAGCAATTAGAATGTCCTGACTTATTTTTTGACCTATTAGAACATTGGGACCCATTTTTTGAGCTATTAGAACGTCCTGACTCATTCTTTCAGATATTAGAATTTCCAGAATTTTGTACTTTTCATTCTTTTTTGTATTCTCCTCCAAATTTCATCCTCAACCAGTTCGT</canonical>
            <polymorphic>AGTTTTTGACCAATTTTTTGAGCTATTGACACACTTTGATCCATTTTGCAAGCTATTAAAACATTCTGACCCATTTGTTGAGCTATTAAAATATTCTGACCCATTTGTTGAGCTATAAGAATATTCTGACTTATTTCTTGAGCTATTAGAACGTCCTGACCCATTTTGTGAGCTATTAGAACTTTTTGGTCTACTCTTTGAGCTATTAGAATTTTCTAACTCATGTTTTGAGCTATTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACCTATTTTACGAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATGTCCTGACCCATTTTMCGAGCTATTAGAACGTCCTGATCTATTTTTTGAGCTTTTAAAACAAGATGACCCATTTTCGGAGCTATTAGAATTTTCTAAAATATTTTGTGAGCTATTAGAATATCCTGACCCATTTTGTGAGCTATTAAAATCTCCTGACCCATTTTATGAGCTATTAGAATAGTCTGATAAACTTTTGGAGCTATTAGAATATGCTGAGCCATTCTGTGAGCTATTAGAATATCCTGGCCAATTTTTTGAGCTATAGAATAGTCTGATTAACATTTTGAGCTATTACAACATTGTGACCCATTTTTTGACCGATTATAAAACCCTGGTCCATTATTCAAGCAATTAGAATGTCCTGACTTATTTTTTGACCTATTAGAACATTGGGACCCATTTTTTGAGCTATTAGAACGTCCTGACTCATTCTTTCAGATATTAGAATTTCCAGAATTTTGTACTTTTCATTCTTTTTTGTATTCTCCTCCAAATTTCATCCTCAACCAGTTCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>164 132 120 108 92 89 78 67 60 30 30 30</canonical_bands>
                <polymorphic_bands>192 164 120 108 92 89 78 67 30 30 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCGAGCTATTAGAAAATCCT</pcr_primer_p1>
		<pcr_primer_p2>AGCTCCAAAAGTTTATCAGACTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATGTCCTGACCCATTTTCCGAGCTATTAGAACGTCCTGATCTATTTTTTGAGCTTTTAAAACAAGATGACCCATTTTCGGAGCTATTAGAATTTTCTAAAATATTTTGTGAGCTATTAGAATATCCTGACCCATTTTGTGAGCTATTAAAATCTCCTGACCCATTTTATGAGCTATTAGAATAGTCTGATAAACTTTTGGAGCT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATGTCCTGACCCATTTTMCGAGCTATTAGAACGTCCTGATCTATTTTTTGAGCTTTTAAAACAAGATGACCCATTTTCGGAGCTATTAGAATTTTCTAAAATATTTTGTGAGCTATTAGAATATCCTGACCCATTTTGTGAGCTATTAAAATCTCCTGACCCATTTTATGAGCTATTAGAATAGTCTGATAAACTTTTGGAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34288</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>6625</contig_pos>
        <strand></strand>
        <context>ACCCATTTTC[G/C]GAGCTATTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GAACGTCCTGATCTATTTTTTGAGCTTTTAAAACAAGATGACCCATTTTC</left_flank>
        <right_flank>GAGCTATTAGAATTTTCTAAAATATTTTGTGAGCTATTAGAATATCCTGA</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTCTGACCCATTTGTTGAGCTATTAAAATATTCTGACCCATTTGTTGAGCTATAAGAATATTCTGACTTATTTCTTGAGCTATTAGAACGTCCTGACCCATTTTGTGAGCTATTAGAACTTTTTGGTCTACTCTTTGAGCTATTAGAATTTTCTAACTCATGTTTTGAGCTATTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACCTATTTTACGAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATGTCCTGACCCATTTTCCGAGCTATTAGAACGTCCTGATCTATTTTTTGAGCTTTTAAAACAAGATGACCCATTTTCGGAGCTATTAGAATTTTCTAAAATATTTTGTGAGCTATTAGAATATCCTGACCCATTTTGTGAGCTATTAAAATCTCCTGACCCATTTTATGAGCTATTAGAATAGTCTGATAAACTTTTGGAGCTATTAGAATATGCTGAGCCATTCTGTGAGCTATTAGAATATCCTGGCCAATTTTTTGAGCTATAGAATAGTCTGATTAACATTTTGAGCTATTACAACATTGTGACCCATTTTTTGACCGATTATAAAACCCTGGTCCATTATTCAAGCAATTAGAATGTCCTGACTTATTTTTTGACCTATTAGAACATTGGGACCCATTTTTTGAGCTATTAGAACGTCCTGACTCATTCTTTCAGATATTAGAATTTCCAGAATTTTGTACTTTTCATTCTTTTTTGTATTCTCCTCCAAATTTCATCCTCAACCAGTTCGTAGTTTTTTTTTTCCTAATTTCCTCTTTTTACTACACGAAATGCAAACAGACAATGATGGTT</canonical>
            <polymorphic>CATTCTGACCCATTTGTTGAGCTATTAAAATATTCTGACCCATTTGTTGAGCTATAAGAATATTCTGACTTATTTCTTGAGCTATTAGAACGTCCTGACCCATTTTGTGAGCTATTAGAACTTTTTGGTCTACTCTTTGAGCTATTAGAATTTTCTAACTCATGTTTTGAGCTATTAGAATACTCTGACCCATTTTGTGAGCAATTAGAATGGTCTGATAAACTTTTTGAGCTATTAGAGCGTCCTGACTCATTTCTTTGAGTTATTAGAACGTCTTGACCCATTTTGTTGAGCTATTAGATCACTCTGACCTATTTTACGAGCTATTAGAACGTCCTGACTCATTCTTTCAGTTATAAGAATATTCTTACTTGTTTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATGTCCTGACCCATTTTCCGAGCTATTAGAACGTCCTGATCTATTTTTTGAGCTTTTAAAACAAGATGACCCATTTTCSGAGCTATTAGAATTTTCTAAAATATTTTGTGAGCTATTAGAATATCCTGACCCATTTTGTGAGCTATTAAAATCTCCTGACCCATTTTATGAGCTATTAGAATAGTCTGATAAACTTTTGGAGCTATTAGAATATGCTGAGCCATTCTGTGAGCTATTAGAATATCCTGGCCAATTTTTTGAGCTATAGAATAGTCTGATTAACATTTTGAGCTATTACAACATTGTGACCCATTTTTTGACCGATTATAAAACCCTGGTCCATTATTCAAGCAATTAGAATGTCCTGACTTATTTTTTGACCTATTAGAACATTGGGACCCATTTTTTGAGCTATTAGAACGTCCTGACTCATTCTTTCAGATATTAGAATTTCCAGAATTTTGTACTTTTCATTCTTTTTTGTATTCTCCTCCAAATTTCATCCTCAACCAGTTCGTAGTTTTTTTTTTCCTAATTTCCTCTTTTTACTACACGAAATGCAAACAGACAATGATGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCGAGCTATTAGAAAATCCT</pcr_primer_p1>
		<pcr_primer_p2>AGCTCCAAAAGTTTATCAGACTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATGTCCTGACCCATTTTCCGAGCTATTAGAACGTCCTGATCTATTTTTTGAGCTTTTAAAACAAGATGACCCATTTTCGGAGCTATTAGAATTTTCTAAAATATTTTGTGAGCTATTAGAATATCCTGACCCATTTTGTGAGCTATTAAAATCTCCTGACCCATTTTATGAGCTATTAGAATAGTCTGATAAACTTTTGGAGCT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCGAGCTATTAGAAAATCCTGACCTATCATTCAAGCTATTAGAATGTCCTGACCCATTTTCCGAGCTATTAGAACGTCCTGATCTATTTTTTGAGCTTTTAAAACAAGATGACCCATTTTCSGAGCTATTAGAATTTTCTAAAATATTTTGTGAGCTATTAGAATATCCTGACCCATTTTGTGAGCTATTAAAATCTCCTGACCCATTTTATGAGCTATTAGAATAGTCTGATAAACTTTTGGAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34289</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>8453</contig_pos>
        <strand></strand>
        <context>aattcagaaa[A/T]tcaraaattc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAA</left_flank>
        <right_flank>TCAAAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCGGAAATTC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGTGGTGACTGTAGCGATGGTGTAGCCTTGAAGACGTTGAAATGGTCGGGAGGTAACATATGTAGGACGGAAGGAAGAAAAGGAGGAAGAAGAATGAAAAAAAATGAACATGGTCAGAAAAAAGGAGATGGGCGGTATTTTTGGGCAAATAAATTATGATGCACCATGTACTACGAAAAGTGTTTGTTGTGTATTTTCAAGGGTGTGGAGGATGGGGAACGGCGGAAAAATGGAAGGATTAAATTTTTCAAAAGAATGTTACATTTGGAATATAGGGAATTCTAAAAAATTCAGATAGATTGGAATTATGAATACAAGAGAACCTTTAAAACCCATGGAAGTCTGAAATTCATAGTTCCGGAAAACGATAAGAAATTTCGGACGTCATGACGATCCAGAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAAATCAAAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAGTTCAAAAATTCAGAAATTCAGAAATTCATAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAACCATCTATATTTTAATGCGTTC</canonical>
            <polymorphic>ACGTGGTGACTGTAGCGATGGTGTAGCCTTGAAGACGTTGAAATGGTCGGGAGGTAACATATGTAGGACGGAAGGAAGAAAAGGAGGAAGAAGAATGAAAAAAAATGAACATGGTCAGAAAAAAGGAGATGGGCGGTATTTTTGGGCAAATAAATTATGATGCACCATGTACTACGAAAAGTGTTTGTTGTGTATTTTCAAGGGTGTGGAGGATGGGGAACGGCGGAAAAATGGAAGGATTAAATTTTTCAAAAGAATGTTACATTTGGAATATAGGGAATTCTAAAAAATTCAGATAGATTGGAATTATGAATACAAGAGAACCTTTAAAACCCATGGAAGTCTGAAATTCATAGTTCCGGAAAACGATAAGAAATTTCGGACGTCATGACGATCCAGAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAAWTCAAAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAGTTCAAAAATTCAGAAATTCAGAAATTCATAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAACCATCTATATTTTAATGCGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAGAAATTTCGGACGTCAT</pcr_primer_p1>
		<pcr_primer_p2>TTATGGGTACATAATGCTAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>690</pcr_amplicon_size>
		<canonical_amplicon>ATAAGAAATTTCGGACGTCATGACGATCCAGAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAAATCAAAAATTCAGAAGTTCAGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATAAGAAATTTCGGACGTCATGACGATCCAGAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAAWTCAAAAATTCAGAAGTTCAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34290</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>8457</contig_pos>
        <strand></strand>
        <context>cagaaawtca[A/G]aaattcagaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAAATCA</left_flank>
        <right_flank>AAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGACTGTAGCGATGGTGTAGCCTTGAAGACGTTGAAATGGTCGGGAGGTAACATATGTAGGACGGAAGGAAGAAAAGGAGGAAGAAGAATGAAAAAAAATGAACATGGTCAGAAAAAAGGAGATGGGCGGTATTTTTGGGCAAATAAATTATGATGCACCATGTACTACGAAAAGTGTTTGTTGTGTATTTTCAAGGGTGTGGAGGATGGGGAACGGCGGAAAAATGGAAGGATTAAATTTTTCAAAAGAATGTTACATTTGGAATATAGGGAATTCTAAAAAATTCAGATAGATTGGAATTATGAATACAAGAGAACCTTTAAAACCCATGGAAGTCTGAAATTCATAGTTCCGGAAAACGATAAGAAATTTCGGACGTCATGACGATCCAGAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAAATCAAAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAGTTCAAAAATTCAGAAATTCAGAAATTCATAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAACCATCTATATTTTAATGCGTTCTATG</canonical>
            <polymorphic>GGTGACTGTAGCGATGGTGTAGCCTTGAAGACGTTGAAATGGTCGGGAGGTAACATATGTAGGACGGAAGGAAGAAAAGGAGGAAGAAGAATGAAAAAAAATGAACATGGTCAGAAAAAAGGAGATGGGCGGTATTTTTGGGCAAATAAATTATGATGCACCATGTACTACGAAAAGTGTTTGTTGTGTATTTTCAAGGGTGTGGAGGATGGGGAACGGCGGAAAAATGGAAGGATTAAATTTTTCAAAAGAATGTTACATTTGGAATATAGGGAATTCTAAAAAATTCAGATAGATTGGAATTATGAATACAAGAGAACCTTTAAAACCCATGGAAGTCTGAAATTCATAGTTCCGGAAAACGATAAGAAATTTCGGACGTCATGACGATCCAGAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAAATCARAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAGTTCAAAAATTCAGAAATTCAGAAATTCATAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAACCATCTATATTTTAATGCGTTCTATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAGAAATTTCGGACGTCAT</pcr_primer_p1>
		<pcr_primer_p2>TTATGGGTACATAATGCTAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>690</pcr_amplicon_size>
		<canonical_amplicon>ATAAGAAATTTCGGACGTCATGACGATCCAGAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAAATCAAAAATTCAGAAGTTCAGAAATTCA</canonical_amplicon>
		<polymorphic_amplicon>ATAAGAAATTTCGGACGTCATGACGATCCAGAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAAATCARAAATTCAGAAGTTCAGAAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34291</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>8468</contig_pos>
        <strand></strand>
        <context>aaattcagaa[G/A]ttcagaaatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAATTCAGAAATTCAGAAATTCAGAAATTCAGAAAATCAAAAATTCAGAA</left_flank>
        <right_flank>TTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGAAATTCAGAAATT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATGGTGTAGCCTTGAAGACGTTGAAATGGTCGGGAGGTAACATATGTAGGACGGAAGGAAGAAAAGGAGGAAGAAGAATGAAAAAAAATGAACATGGTCAGAAAAAAGGAGATGGGCGGTATTTTTGGGCAAATAAATTATGATGCACCATGTACTACGAAAAGTGTTTGTTGTGTATTTTCAAGGGTGTGGAGGATGGGGAACGGCGGAAAAATGGAAGGATTAAATTTTTCAAAAGAATGTTACATTTGGAATATAGGGAATTCTAAAAAATTCAGATAGATTGGAATTATGAATACAAGAGAACCTTTAAAACCCATGGAAGTCTGAAATTCATAGTTCCGGAAAACGATAAGAAATTTCGGACGTCATGACGATCCAGAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAAATCAAAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAGTTCAAAAATTCAGAAATTCAGAAATTCATAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAACCATCTATATTTTAATGCGTTCTATGTACTAACTAAA</canonical>
            <polymorphic>CGATGGTGTAGCCTTGAAGACGTTGAAATGGTCGGGAGGTAACATATGTAGGACGGAAGGAAGAAAAGGAGGAAGAAGAATGAAAAAAAATGAACATGGTCAGAAAAAAGGAGATGGGCGGTATTTTTGGGCAAATAAATTATGATGCACCATGTACTACGAAAAGTGTTTGTTGTGTATTTTCAAGGGTGTGGAGGATGGGGAACGGCGGAAAAATGGAAGGATTAAATTTTTCAAAAGAATGTTACATTTGGAATATAGGGAATTCTAAAAAATTCAGATAGATTGGAATTATGAATACAAGAGAACCTTTAAAACCCATGGAAGTCTGAAATTCATAGTTCCGGAAAACGATAAGAAATTTCGGACGTCATGACGATCCAGAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAAATCAAAAATTCAGAARTTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAGTTCAAAAATTCAGAAATTCAGAAATTCATAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAACCATCTATATTTTAATGCGTTCTATGTACTAACTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAGAAATTTCGGACGTCAT</pcr_primer_p1>
		<pcr_primer_p2>TTATGGGTACATAATGCTAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>690</pcr_amplicon_size>
		<canonical_amplicon>ATAAGAAATTTCGGACGTCATGACGATCCAGAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAAATCAAAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAA</canonical_amplicon>
		<polymorphic_amplicon>ATAAGAAATTTCGGACGTCATGACGATCCAGAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAAATCAAAAATTCAGAARTTCAGAAATTCAGAAATTCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34292</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>8496</contig_pos>
        <strand></strand>
        <context>tcagaaattc[G/A]gaaattcaga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCAGAAAATCAAAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTC</left_flank>
        <right_flank>GAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTCGGGAGGTAACATATGTAGGACGGAAGGAAGAAAAGGAGGAAGAAGAATGAAAAAAAATGAACATGGTCAGAAAAAAGGAGATGGGCGGTATTTTTGGGCAAATAAATTATGATGCACCATGTACTACGAAAAGTGTTTGTTGTGTATTTTCAAGGGTGTGGAGGATGGGGAACGGCGGAAAAATGGAAGGATTAAATTTTTCAAAAGAATGTTACATTTGGAATATAGGGAATTCTAAAAAATTCAGATAGATTGGAATTATGAATACAAGAGAACCTTTAAAACCCATGGAAGTCTGAAATTCATAGTTCCGGAAAACGATAAGAAATTTCGGACGTCATGACGATCCAGAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAAATCAAAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAGTTCAAAAATTCAGAAATTCAGAAATTCATAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAACCATCTATATTTTAATGCGTTCTATGTACTAACTAAAAAAGGGGGCGCGGAATCCCCTTTTTAGC</canonical>
            <polymorphic>TGGTCGGGAGGTAACATATGTAGGACGGAAGGAAGAAAAGGAGGAAGAAGAATGAAAAAAAATGAACATGGTCAGAAAAAAGGAGATGGGCGGTATTTTTGGGCAAATAAATTATGATGCACCATGTACTACGAAAAGTGTTTGTTGTGTATTTTCAAGGGTGTGGAGGATGGGGAACGGCGGAAAAATGGAAGGATTAAATTTTTCAAAAGAATGTTACATTTGGAATATAGGGAATTCTAAAAAATTCAGATAGATTGGAATTATGAATACAAGAGAACCTTTAAAACCCATGGAAGTCTGAAATTCATAGTTCCGGAAAACGATAAGAAATTTCGGACGTCATGACGATCCAGAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAAATCAAAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCRGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAGTTCAAAAATTCAGAAATTCAGAAATTCATAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAACCATCTATATTTTAATGCGTTCTATGTACTAACTAAAAAAGGGGGCGCGGAATCCCCTTTTTAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAGAAATTTCGGACGTCAT</pcr_primer_p1>
		<pcr_primer_p2>TTATGGGTACATAATGCTAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>690</pcr_amplicon_size>
		<canonical_amplicon>ATAAGAAATTTCGGACGTCATGACGATCCAGAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAAATCAAAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGAAATTCAGAAATTC</canonical_amplicon>
		<polymorphic_amplicon>ATAAGAAATTTCGGACGTCATGACGATCCAGAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAAATCAAAAATTCAGAAGTTCAGAAATTCAGAAATTCAGAAATTCRGAAATTCAGAAATTCAGAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34293</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>42488</contig_pos>
        <strand>+</strand>
        <context>TTTTGTTGTT[A/C]TAMTTTTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAGGTCAAGGGGTGAGAGAAGGTGACAAGTTTTGCGATGTTTTTGTTGTT</left_flank>
        <right_flank>TATTTTTTTGTCAAAACCCAACTTTTCAAAATTTACAATTAACAGTCTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTTGACAACTTTTTGATATCTCTTATAGAAATTGAGATAATTGAGTTGCAAGCATAAAAGTCACAAGCGCTGCCGACCAAATAGCTCGCGCCGACAGATACATACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGATATCAAAAATTTGTCAACTGATAAAATGTTTATCATATTATCAGAAATATTTAATTACTTATCAACTTTTGATATCTTTTACGAGAACCGAGATAAATTGGCTCAAAGAACAATTACGGTTATACTTTCTTCAGAATAAGAGGACCTTGGTCCATAACTCAGTTCTTGTCACCAGGGAATCACCTCTGGCTGGGTACAAACATACTAAAACACACGTGTTGGGCAAATATTGGCATAGGCAAAAGATGTAACGGTTAGGTTGGAAGAGGAGGAGGAGGAGAGAGGAAGGAAGGCTTAGGACTTATGAATCAGGTCAAGGGGTGAGAGAAGGTGACAAGTTTTGCGATGTTTTTGTTGTTGTATTTTTTTGTCAAAACCCAACTTTTCAAAATTTACAATTAACAGTCTCATAGACCCAAAAACATTTTTTTGGCAAGATACCAATCTACAGAATATATTACGAGATCTCAATAAAAAACAAGAATACTCATCCAACACCATTATTTCACCAATTCTTCCCAAATGTTGCCGAAAAAAGAGAAAAGTGACGCTTCTTCATCTTCTGATGATCACTTTTCCTGTTCCTTTCGATTTCCACCCATTCATTCTATTATTTTTCTCTGCTTCTCTAGTTAGCTCTCCGAAAATCCGACACTATTTCTATTTTGGGTCTTATCAATGTCCCTCTCCGTTTTTGGCATTCTTTATTCTCTCTATAGATTGATTGGCAAGTGGTTGATGAAGAAAAAAAAAGACGGGCGGTTCGGAGATATTGACAAGTTGATGATTTCGAGAATTTTTAGGTTTTTAGGGTTCAACTTTGAGCTAATTTATCTTGATGCTTGTAAAAGGTATCAAAA</canonical>
            <polymorphic>TAGTTGACAACTTTTTGATATCTCTTATAGAAATTGAGATAATTGAGTTGCAAGCATAAAAGTCACAAGCGCTGCCGACCAAATAGCTCGCGCCGACAGATACATACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGATATCAAAAATTTGTCAACTGATAAAATGTTTATCATATTATCAGAAATATTTAATTACTTATCAACTTTTGATATCTTTTACGAGAACCGAGATAAATTGGCTCAAAGAACAATTACGGTTATACTTTCTTCAGAATAAGAGGACCTTGGTCCATAACTCAGTTCTTGTCACCAGGGAATCACCTCTGGCTGGGTACAAACATACTAAAACACACGTGTTGGGCAAATATTGGCATAGGCAAAAGATGTAACGGTTAGGTTGGAAGAGGAGGAGGAGGAGAGAGGAAGGAAGGCTTAGGACTTATGAATCAGGTCAAGGGGTGAGAGAAGGTGACAAGTTTTGCGATGTTTTTGTTGTTMTATTTTTTTGTCAAAACCCAACTTTTCAAAATTTACAATTAACAGTCTCATAGACCCAAAAACATTTTTTTGGCAAGATACCAATCTACAGAATATATTACGAGATCTCAATAAAAAACAAGAATACTCATCCAACACCATTATTTCACCAATTCTTCCCAAATGTTGCCGAAAAAAGAGAAAAGTGACGCTTCTTCATCTTCTGATGATCACTTTTCCTGTTCCTTTCGATTTCCACCCATTCATTCTATTATTTTTCTCTGCTTCTCTAGTTAGCTCTCCGAAAATCCGACACTATTTCTATTTTGGGTCTTATCAATGTCCCTCTCCGTTTTTGGCATTCTTTATTCTCTCTATAGATTGATTGGCAAGTGGTTGATGAAGAAAAAAAAAGACGGGCGGTTCGGAGATATTGACAAGTTGATGATTTCGAGAATTTTTAGGTTTTTAGGGTTCAACTTTGAGCTAATTTATCTTGATGCTTGTAAAAGGTATCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAACGGTTAGGTTGGAAGAG</pcr_primer_p1>
		<pcr_primer_p2>TGTTGGATGAGTATTCTTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAACGGTTAGGTTGGAAGAGGAGGAGGAGGAGAGAGGAAGGAAGGCTTAGGACTTATGAATCAGGTCAAGGGGTGAGAGAAGGTGACAAGTTTTGCGATGTTTTTGTTGTTGTATTTTTTTGTCAAAACCCAACTTTTCAAAATTTACAATTAACAGTCTCATAGACCCAAAAACATTTTTTTGGCAAGATACCAATCTACAGAATATATTACGAGATCTCAATAAAAAACAAGAATACTCATCCAACA</canonical_amplicon>
		<polymorphic_amplicon>GTAACGGTTAGGTTGGAAGAGGAGGAGGAGGAGAGAGGAAGGAAGGCTTAGGACTTATGAATCAGGTCAAGGGGTGAGAGAAGGTGACAAGTTTTGCGATGTTTTTGTTGTTMTATTTTTTTGTCAAAACCCAACTTTTCAAAATTTACAATTAACAGTCTCATAGACCCAAAAACATTTTTTTGGCAAGATACCAATCTACAGAATATATTACGAGATCTCAATAAAAAACAAGAATACTCATCCAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34294</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>42491</contig_pos>
        <strand>+</strand>
        <context>TGTTGTTMTA[A/C]TTTTTTGTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTCAAGGGGTGAGAGAAGGTGACAAGTTTTGCGATGTTTTTGTTGTTGTA</left_flank>
        <right_flank>TTTTTTGTCAAAACCCAACTTTTCAAAATTTACAATTAACAGTCTCATAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGACAACTTTTTGATATCTCTTATAGAAATTGAGATAATTGAGTTGCAAGCATAAAAGTCACAAGCGCTGCCGACCAAATAGCTCGCGCCGACAGATACATACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGATATCAAAAATTTGTCAACTGATAAAATGTTTATCATATTATCAGAAATATTTAATTACTTATCAACTTTTGATATCTTTTACGAGAACCGAGATAAATTGGCTCAAAGAACAATTACGGTTATACTTTCTTCAGAATAAGAGGACCTTGGTCCATAACTCAGTTCTTGTCACCAGGGAATCACCTCTGGCTGGGTACAAACATACTAAAACACACGTGTTGGGCAAATATTGGCATAGGCAAAAGATGTAACGGTTAGGTTGGAAGAGGAGGAGGAGGAGAGAGGAAGGAAGGCTTAGGACTTATGAATCAGGTCAAGGGGTGAGAGAAGGTGACAAGTTTTGCGATGTTTTTGTTGTTGTATTTTTTTGTCAAAACCCAACTTTTCAAAATTTACAATTAACAGTCTCATAGACCCAAAAACATTTTTTTGGCAAGATACCAATCTACAGAATATATTACGAGATCTCAATAAAAAACAAGAATACTCATCCAACACCATTATTTCACCAATTCTTCCCAAATGTTGCCGAAAAAAGAGAAAAGTGACGCTTCTTCATCTTCTGATGATCACTTTTCCTGTTCCTTTCGATTTCCACCCATTCATTCTATTATTTTTCTCTGCTTCTCTAGTTAGCTCTCCGAAAATCCGACACTATTTCTATTTTGGGTCTTATCAATGTCCCTCTCCGTTTTTGGCATTCTTTATTCTCTCTATAGATTGATTGGCAAGTGGTTGATGAAGAAAAAAAAAGACGGGCGGTTCGGAGATATTGACAAGTTGATGATTTCGAGAATTTTTAGGTTTTTAGGGTTCAACTTTGAGCTAATTTATCTTGATGCTTGTAAAAGGTATCAAAAAGT</canonical>
            <polymorphic>TTGACAACTTTTTGATATCTCTTATAGAAATTGAGATAATTGAGTTGCAAGCATAAAAGTCACAAGCGCTGCCGACCAAATAGCTCGCGCCGACAGATACATACTTTGAGCTTAATTATCTTGGTTCCTATAAGAGATATCAAAAATTTGTCAACTGATAAAATGTTTATCATATTATCAGAAATATTTAATTACTTATCAACTTTTGATATCTTTTACGAGAACCGAGATAAATTGGCTCAAAGAACAATTACGGTTATACTTTCTTCAGAATAAGAGGACCTTGGTCCATAACTCAGTTCTTGTCACCAGGGAATCACCTCTGGCTGGGTACAAACATACTAAAACACACGTGTTGGGCAAATATTGGCATAGGCAAAAGATGTAACGGTTAGGTTGGAAGAGGAGGAGGAGGAGAGAGGAAGGAAGGCTTAGGACTTATGAATCAGGTCAAGGGGTGAGAGAAGGTGACAAGTTTTGCGATGTTTTTGTTGTTGTAMTTTTTTGTCAAAACCCAACTTTTCAAAATTTACAATTAACAGTCTCATAGACCCAAAAACATTTTTTTGGCAAGATACCAATCTACAGAATATATTACGAGATCTCAATAAAAAACAAGAATACTCATCCAACACCATTATTTCACCAATTCTTCCCAAATGTTGCCGAAAAAAGAGAAAAGTGACGCTTCTTCATCTTCTGATGATCACTTTTCCTGTTCCTTTCGATTTCCACCCATTCATTCTATTATTTTTCTCTGCTTCTCTAGTTAGCTCTCCGAAAATCCGACACTATTTCTATTTTGGGTCTTATCAATGTCCCTCTCCGTTTTTGGCATTCTTTATTCTCTCTATAGATTGATTGGCAAGTGGTTGATGAAGAAAAAAAAAGACGGGCGGTTCGGAGATATTGACAAGTTGATGATTTCGAGAATTTTTAGGTTTTTAGGGTTCAACTTTGAGCTAATTTATCTTGATGCTTGTAAAAGGTATCAAAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAACGGTTAGGTTGGAAGAG</pcr_primer_p1>
		<pcr_primer_p2>TGTTGGATGAGTATTCTTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAACGGTTAGGTTGGAAGAGGAGGAGGAGGAGAGAGGAAGGAAGGCTTAGGACTTATGAATCAGGTCAAGGGGTGAGAGAAGGTGACAAGTTTTGCGATGTTTTTGTTGTTGTATTTTTTTGTCAAAACCCAACTTTTCAAAATTTACAATTAACAGTCTCATAGACCCAAAAACATTTTTTTGGCAAGATACCAATCTACAGAATATATTACGAGATCTCAATAAAAAACAAGAATACTCATCCAACA</canonical_amplicon>
		<polymorphic_amplicon>GTAACGGTTAGGTTGGAAGAGGAGGAGGAGGAGAGAGGAAGGAAGGCTTAGGACTTATGAATCAGGTCAAGGGGTGAGAGAAGGTGACAAGTTTTGCGATGTTTTTGTTGTTGTAMTTTTTTGTCAAAACCCAACTTTTCAAAATTTACAATTAACAGTCTCATAGACCCAAAAACATTTTTTTGGCAAGATACCAATCTACAGAATATATTACGAGATCTCAATAAAAAACAAGAATACTCATCCAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34295</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>43932</contig_pos>
        <strand>+</strand>
        <context>AATGGGAAAC[C/T]TGAATCATAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACGAGGTGAGAAAAAACTGTGCAATGGGAAAATATAAAAAATGGGAAAC</left_flank>
        <right_flank>TGAATCATAAAGTCAGAATTATTTTTTTTCGGGTTGAATCTTCAGGAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGATAATATCAAATTCCGAAAGTTTCTAAAAAATAAGTAGAAAAACCAAGAAAACCTCGGAAGTCATTTTATGAAAGAATTGAAAATCGAGCACTTTTGTGATAAGTTTCAGTAGAAATCGGCTCCGAACAATGAAGTGCCAGCCTCTAATTGAATGCCACCCCCTAATACAGTGCCACCCCAGACCACCTTCGAACAATAGAAAACCATGGCTATCTAATAGAGTTTTTACGGTATTATAAAAAATTCAAGAAATCGCCTCTTTGAAAATATTTGCCGACTTTTAGCCGAAATTTTTAAAACTAACGGTCAAGCAACTTCAAAAAAAAAGTTTTTTTTTCCGGAAAAAAAGAATGTTGCCTTATCATCATAGAGGGAAAAAAATGAATGAAACTGATAGAGGAATGGAATGTTTGTACGTTTTTTTTTTCGAAAAAAAAGGAGGAGAGACGAGGTGAGAAAAAACTGTGCAATGGGAAAATATAAAAAATGGGAAACCTGAATCATAAAGTCAGAATTATTTTTTTTCGGGTTGAATCTTCAGGAAACTTATTTGAAGGAGTTCGGAAATTCATAATGTGGGATTCATACTTTACGAAACTTTCCAATTTTTTAAAAATAAAAGTTTTCAAATTTGTGAAATCATCGAAAGGTGAAATTTCTAGAAAAAAGTATTAAAAATTTTATAATTTCCATTAAAAATGAAGAGAGAGAGAGAGGACATTTTACAAGTGCTAGTGGTGGAAATGAAAGAAAACTGATGATGATGGTATGATGATAAGGAGATAGTGTGTGTGATATGGAGAGAGAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAAAATGAAAATTTGAAGGCTGAAGGAGAAAACAAGTACACGAGGGACAGGACAAGAACAGTTGGGAGGAAGGAAATCGGGAGGATATGGTTAGCAGATGGACAGTGAAAGATATGGATCTGATTGGAATCTCTGGGTGGGTAGATCAACTTTCTTC</canonical>
            <polymorphic>GGGATAATATCAAATTCCGAAAGTTTCTAAAAAATAAGTAGAAAAACCAAGAAAACCTCGGAAGTCATTTTATGAAAGAATTGAAAATCGAGCACTTTTGTGATAAGTTTCAGTAGAAATCGGCTCCGAACAATGAAGTGCCAGCCTCTAATTGAATGCCACCCCCTAATACAGTGCCACCCCAGACCACCTTCGAACAATAGAAAACCATGGCTATCTAATAGAGTTTTTACGGTATTATAAAAAATTCAAGAAATCGCCTCTTTGAAAATATTTGCCGACTTTTAGCCGAAATTTTTAAAACTAACGGTCAAGCAACTTCAAAAAAAAAGTTTTTTTTTCCGGAAAAAAAGAATGTTGCCTTATCATCATAGAGGGAAAAAAATGAATGAAACTGATAGAGGAATGGAATGTTTGTACGTTTTTTTTTTCGAAAAAAAAGGAGGAGAGACGAGGTGAGAAAAAACTGTGCAATGGGAAAATATAAAAAATGGGAAACYTGAATCATAAAGTCAGAATTATTTTTTTTCGGGTTGAATCTTCAGGAAACTTATTTGAAGGAGTTCGGAAATTCATAATGTGGGATTCATACTTTACGAAACTTTCCAATTTTTTAAAAATAAAAGTTTTCAAATTTGTGAAATCATCGAAAGGTGAAATTTCTAGAAAAAAGTATTAAAAATTTTATAATTTCCATTAAAAATGAAGAGAGAGAGAGAGGACATTTTACAAGTGCTAGTGGTGGAAATGAAAGAAAACTGATGATGATGGTATGATGATAAGGAGATAGTGTGTGTGATATGGAGAGAGAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAAAATGAAAATTTGAAGGCTGAAGGAGAAAACAAGTACACGAGGGACAGGACAAGAACAGTTGGGAGGAAGGAAATCGGGAGGATATGGTTAGCAGATGGACAGTGAAAGATATGGATCTGATTGGAATCTCTGGGTGGGTAGATCAACTTTCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTATCATCATAGAGGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGGAAAGTTTCGTAAAGTATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTTATCATCATAGAGGGAAAAAAATGAATGAAACTGATAGAGGAATGGAATGTTTGTACGTTTTTTTTTTCGAAAAAAAAGGAGGAGAGACGAGGTGAGAAAAAACTGTGCAATGGGAAAATATAAAAAATGGGAAACCTGAATCATAAAGTCAGAATTATTTTTTTTCGGGTTGAATCTTCAGGAAACTTATTTGAAGGAGTTCGGAAATTCATAATGTGGGATTCATACTTTACGAAACTTTCCAAT</canonical_amplicon>
		<polymorphic_amplicon>CCTTATCATCATAGAGGGAAAAAAATGAATGAAACTGATAGAGGAATGGAATGTTTGTACGTTTTTTTTTTCGAAAAAAAAGGAGGAGAGACGAGGTGAGAAAAAACTGTGCAATGGGAAAATATAAAAAATGGGAAACYTGAATCATAAAGTCAGAATTATTTTTTTTCGGGTTGAATCTTCAGGAAACTTATTTGAAGGAGTTCGGAAATTCATAATGTGGGATTCATACTTTACGAAACTTTCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34296</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>43955</contig_pos>
        <strand>+</strand>
        <context>TCAGAATTAT[A/T]TTTTTTCGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATGGGAAAATATAAAAAATGGGAAACCTGAATCATAAAGTCAGAATTAT</left_flank>
        <right_flank>TTTTTTCGGGTTGAATCTTCAGGAAACTTATTTGAAGGAGTTCGGAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTAAAAAATAAGTAGAAAAACCAAGAAAACCTCGGAAGTCATTTTATGAAAGAATTGAAAATCGAGCACTTTTGTGATAAGTTTCAGTAGAAATCGGCTCCGAACAATGAAGTGCCAGCCTCTAATTGAATGCCACCCCCTAATACAGTGCCACCCCAGACCACCTTCGAACAATAGAAAACCATGGCTATCTAATAGAGTTTTTACGGTATTATAAAAAATTCAAGAAATCGCCTCTTTGAAAATATTTGCCGACTTTTAGCCGAAATTTTTAAAACTAACGGTCAAGCAACTTCAAAAAAAAAGTTTTTTTTTCCGGAAAAAAAGAATGTTGCCTTATCATCATAGAGGGAAAAAAATGAATGAAACTGATAGAGGAATGGAATGTTTGTACGTTTTTTTTTTCGAAAAAAAAGGAGGAGAGACGAGGTGAGAAAAAACTGTGCAATGGGAAAATATAAAAAATGGGAAACCTGAATCATAAAGTCAGAATTATTTTTTTTCGGGTTGAATCTTCAGGAAACTTATTTGAAGGAGTTCGGAAATTCATAATGTGGGATTCATACTTTACGAAACTTTCCAATTTTTTAAAAATAAAAGTTTTCAAATTTGTGAAATCATCGAAAGGTGAAATTTCTAGAAAAAAGTATTAAAAATTTTATAATTTCCATTAAAAATGAAGAGAGAGAGAGAGGACATTTTACAAGTGCTAGTGGTGGAAATGAAAGAAAACTGATGATGATGGTATGATGATAAGGAGATAGTGTGTGTGATATGGAGAGAGAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAAAATGAAAATTTGAAGGCTGAAGGAGAAAACAAGTACACGAGGGACAGGACAAGAACAGTTGGGAGGAAGGAAATCGGGAGGATATGGTTAGCAGATGGACAGTGAAAGATATGGATCTGATTGGAATCTCTGGGTGGGTAGATCAACTTTCTTCTGTTGGCCATAAGAGTAGGGGGA</canonical>
            <polymorphic>TTTCTAAAAAATAAGTAGAAAAACCAAGAAAACCTCGGAAGTCATTTTATGAAAGAATTGAAAATCGAGCACTTTTGTGATAAGTTTCAGTAGAAATCGGCTCCGAACAATGAAGTGCCAGCCTCTAATTGAATGCCACCCCCTAATACAGTGCCACCCCAGACCACCTTCGAACAATAGAAAACCATGGCTATCTAATAGAGTTTTTACGGTATTATAAAAAATTCAAGAAATCGCCTCTTTGAAAATATTTGCCGACTTTTAGCCGAAATTTTTAAAACTAACGGTCAAGCAACTTCAAAAAAAAAGTTTTTTTTTCCGGAAAAAAAGAATGTTGCCTTATCATCATAGAGGGAAAAAAATGAATGAAACTGATAGAGGAATGGAATGTTTGTACGTTTTTTTTTTCGAAAAAAAAGGAGGAGAGACGAGGTGAGAAAAAACTGTGCAATGGGAAAATATAAAAAATGGGAAACCTGAATCATAAAGTCAGAATTATWTTTTTTCGGGTTGAATCTTCAGGAAACTTATTTGAAGGAGTTCGGAAATTCATAATGTGGGATTCATACTTTACGAAACTTTCCAATTTTTTAAAAATAAAAGTTTTCAAATTTGTGAAATCATCGAAAGGTGAAATTTCTAGAAAAAAGTATTAAAAATTTTATAATTTCCATTAAAAATGAAGAGAGAGAGAGAGGACATTTTACAAGTGCTAGTGGTGGAAATGAAAGAAAACTGATGATGATGGTATGATGATAAGGAGATAGTGTGTGTGATATGGAGAGAGAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAAAATGAAAATTTGAAGGCTGAAGGAGAAAACAAGTACACGAGGGACAGGACAAGAACAGTTGGGAGGAAGGAAATCGGGAGGATATGGTTAGCAGATGGACAGTGAAAGATATGGATCTGATTGGAATCTCTGGGTGGGTAGATCAACTTTCTTCTGTTGGCCATAAGAGTAGGGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTATCATCATAGAGGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGGAAAGTTTCGTAAAGTATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTTATCATCATAGAGGGAAAAAAATGAATGAAACTGATAGAGGAATGGAATGTTTGTACGTTTTTTTTTTCGAAAAAAAAGGAGGAGAGACGAGGTGAGAAAAAACTGTGCAATGGGAAAATATAAAAAATGGGAAACCTGAATCATAAAGTCAGAATTATTTTTTTTCGGGTTGAATCTTCAGGAAACTTATTTGAAGGAGTTCGGAAATTCATAATGTGGGATTCATACTTTACGAAACTTTCCAAT</canonical_amplicon>
		<polymorphic_amplicon>CCTTATCATCATAGAGGGAAAAAAATGAATGAAACTGATAGAGGAATGGAATGTTTGTACGTTTTTTTTTTCGAAAAAAAAGGAGGAGAGACGAGGTGAGAAAAAACTGTGCAATGGGAAAATATAAAAAATGGGAAACCTGAATCATAAAGTCAGAATTATWTTTTTTCGGGTTGAATCTTCAGGAAACTTATTTGAAGGAGTTCGGAAATTCATAATGTGGGATTCATACTTTACGAAACTTTCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34297</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>44005</contig_pos>
        <strand>+</strand>
        <context>GTTCGGAAAT[C/T]CATAATGTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTTCGGGTTGAATCTTCAGGAAACTTATTTGAAGGAGTTCGGAAAT</left_flank>
        <right_flank>CATAATGTGGGATTCATACTTTACGAAACTTTCCAATTTTTTAAAAATAA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAGAATTGAAAATCGAGCACTTTTGTGATAAGTTTCAGTAGAAATCGGCTCCGAACAATGAAGTGCCAGCCTCTAATTGAATGCCACCCCCTAATACAGTGCCACCCCAGACCACCTTCGAACAATAGAAAACCATGGCTATCTAATAGAGTTTTTACGGTATTATAAAAAATTCAAGAAATCGCCTCTTTGAAAATATTTGCCGACTTTTAGCCGAAATTTTTAAAACTAACGGTCAAGCAACTTCAAAAAAAAAGTTTTTTTTTCCGGAAAAAAAGAATGTTGCCTTATCATCATAGAGGGAAAAAAATGAATGAAACTGATAGAGGAATGGAATGTTTGTACGTTTTTTTTTTCGAAAAAAAAGGAGGAGAGACGAGGTGAGAAAAAACTGTGCAATGGGAAAATATAAAAAATGGGAAACCTGAATCATAAAGTCAGAATTATTTTTTTTCGGGTTGAATCTTCAGGAAACTTATTTGAAGGAGTTCGGAAATTCATAATGTGGGATTCATACTTTACGAAACTTTCCAATTTTTTAAAAATAAAAGTTTTCAAATTTGTGAAATCATCGAAAGGTGAAATTTCTAGAAAAAAGTATTAAAAATTTTATAATTTCCATTAAAAATGAAGAGAGAGAGAGAGGACATTTTACAAGTGCTAGTGGTGGAAATGAAAGAAAACTGATGATGATGGTATGATGATAAGGAGATAGTGTGTGTGATATGGAGAGAGAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAAAATGAAAATTTGAAGGCTGAAGGAGAAAACAAGTACACGAGGGACAGGACAAGAACAGTTGGGAGGAAGGAAATCGGGAGGATATGGTTAGCAGATGGACAGTGAAAGATATGGATCTGATTGGAATCTCTGGGTGGGTAGATCAACTTTCTTCTGTTGGCCATAAGAGTAGGGGGAGGAAAAAGAATAACAAATCGGGAAGAAACCTGTTGCGTAATTTTATGGCA</canonical>
            <polymorphic>GAAAGAATTGAAAATCGAGCACTTTTGTGATAAGTTTCAGTAGAAATCGGCTCCGAACAATGAAGTGCCAGCCTCTAATTGAATGCCACCCCCTAATACAGTGCCACCCCAGACCACCTTCGAACAATAGAAAACCATGGCTATCTAATAGAGTTTTTACGGTATTATAAAAAATTCAAGAAATCGCCTCTTTGAAAATATTTGCCGACTTTTAGCCGAAATTTTTAAAACTAACGGTCAAGCAACTTCAAAAAAAAAGTTTTTTTTTCCGGAAAAAAAGAATGTTGCCTTATCATCATAGAGGGAAAAAAATGAATGAAACTGATAGAGGAATGGAATGTTTGTACGTTTTTTTTTTCGAAAAAAAAGGAGGAGAGACGAGGTGAGAAAAAACTGTGCAATGGGAAAATATAAAAAATGGGAAACCTGAATCATAAAGTCAGAATTATTTTTTTTCGGGTTGAATCTTCAGGAAACTTATTTGAAGGAGTTCGGAAATYCATAATGTGGGATTCATACTTTACGAAACTTTCCAATTTTTTAAAAATAAAAGTTTTCAAATTTGTGAAATCATCGAAAGGTGAAATTTCTAGAAAAAAGTATTAAAAATTTTATAATTTCCATTAAAAATGAAGAGAGAGAGAGAGGACATTTTACAAGTGCTAGTGGTGGAAATGAAAGAAAACTGATGATGATGGTATGATGATAAGGAGATAGTGTGTGTGATATGGAGAGAGAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAAAATGAAAATTTGAAGGCTGAAGGAGAAAACAAGTACACGAGGGACAGGACAAGAACAGTTGGGAGGAAGGAAATCGGGAGGATATGGTTAGCAGATGGACAGTGAAAGATATGGATCTGATTGGAATCTCTGGGTGGGTAGATCAACTTTCTTCTGTTGGCCATAAGAGTAGGGGGAGGAAAAAGAATAACAAATCGGGAAGAAACCTGTTGCGTAATTTTATGGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>277 221 172 172 63 47 25 23</canonical_bands>
                <polymorphic_bands>340 221 172 172 47 25 23</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>224 209 164 96 71 53 47 38 25 25 23 12 8 5</canonical_bands>
                <polymorphic_bands>224 209 164 96 91 71 47 25 25 23 12 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGCAATGGGAAAATATAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GTCCTCTCTCTCTCTCTTCATTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>GTGCAATGGGAAAATATAAAAAATGGGAAACCTGAATCATAAAGTCAGAATTATTTTTTTTCGGGTTGAATCTTCAGGAAACTTATTTGAAGGAGTTCGGAAATTCATAATGTGGGATTCATACTTTACGAAACTTTCCAATTTTTTAAAAATAAAAGTTTTCAAATTTGTGAAATCATCGAAAGGTGAAATTTCTAGAAAAAAGTATTAAAAATTTTATAATTTCCATTAAAAATGAAGAGAGAGAGAGAGGAC</canonical_amplicon>
		<polymorphic_amplicon>GTGCAATGGGAAAATATAAAAAATGGGAAACCTGAATCATAAAGTCAGAATTATTTTTTTTCGGGTTGAATCTTCAGGAAACTTATTTGAAGGAGTTCGGAAATYCATAATGTGGGATTCATACTTTACGAAACTTTCCAATTTTTTAAAAATAAAAGTTTTCAAATTTGTGAAATCATCGAAAGGTGAAATTTCTAGAAAAAAGTATTAAAAATTTTATAATTTCCATTAAAAATGAAGAGAGAGAGAGAGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34298</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>46468</contig_pos>
        <strand></strand>
        <context>ctgtgaaaga[A/T]atcaaaatga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCACCCAGACCATCATCTTTGAGCCCTTATATCTCATTTTCTGTGAAAGA</left_flank>
        <right_flank>ATCAAAATGAGGTTAACTGACAAAATGATGGTGATATTATGATAAACAAT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAAAGAGAGAAAGAGCAAAACAGACATAAAAATAGAACACATATTTTACCTTGTTATATAACAATGGAAGCTCTTACTGTAGGAAAGAGTAGGGGTTGGCTCCGCGCCTAGGGGTCAGTTTTAGAACTGAAAATGTGCTGACAATGTTTTTTAGAATTAAAAAAACCTCAAGTTTGAGAAAAAATCTGAAGCTCGGATCAACAGGTGGAAACTTTCCTAAAAACTCCAAATATAAACTTTAAAGATCGAAAACTATAAATTTCAGGTTGCAACTTTGAGCCCAAATATCTCATTTTCTGTAAAAGATATCGAAAAGTGACAAACTGACCAAATGTTTATCATGAAATCACAAAAATTGTATCAGTTGACAAAATTTTGATATCTCTAATGGGAAACGAGATAACATGAGCTCGAAGTGGACGGTTTTTGAGGGCGTCTATTAGAAGCTCACCCAGACCATCATCTTTGAGCCCTTATATCTCATTTTCTGTGAAAGAAATCAAAATGAGGTTAACTGACAAAATGATGGTGATATTATGATAAACAATTTATTAGTTGACAAAATTTTTATATTTCTGACAGGAACCGAGATAATTGAGCTCAAAGTGCACATATAAAGTGAGCTTGTATTAGAAAAATTACAGTAGGCCAATAATATTTTTTAAATCTGAAAATGACCTCTAAAACCAATTCAATAAAAAATCAGTAGTCTAATATTTCAAGTCCGAATGAGACAAAGAAAAAGACAAAAAGGCGTCAAAAACGGCATGAAGTGTAAAAATCGAGTAGTTCTCTCATCAGAATCAAAAGGTGTGTAATGAAAAGAAAACATTTAGAGATGGGAAAAGAAGGAGAAGAAGAAGACGTGACGCCGTCGTCGGGGGCCACTTCAGAATCTACACAGTGTCTTTCAGAACTGGAAGATGAGAAGATGGTACACCATTTTCAAGTAGTTCCTGTACATTTGTTAGAGTGTCATAACCTTGGAACGGAGAAGA</canonical>
            <polymorphic>TAGAAAGAGAGAAAGAGCAAAACAGACATAAAAATAGAACACATATTTTACCTTGTTATATAACAATGGAAGCTCTTACTGTAGGAAAGAGTAGGGGTTGGCTCCGCGCCTAGGGGTCAGTTTTAGAACTGAAAATGTGCTGACAATGTTTTTTAGAATTAAAAAAACCTCAAGTTTGAGAAAAAATCTGAAGCTCGGATCAACAGGTGGAAACTTTCCTAAAAACTCCAAATATAAACTTTAAAGATCGAAAACTATAAATTTCAGGTTGCAACTTTGAGCCCAAATATCTCATTTTCTGTAAAAGATATCGAAAAGTGACAAACTGACCAAATGTTTATCATGAAATCACAAAAATTGTATCAGTTGACAAAATTTTGATATCTCTAATGGGAAACGAGATAACATGAGCTCGAAGTGGACGGTTTTTGAGGGCGTCTATTAGAAGCTCACCCAGACCATCATCTTTGAGCCCTTATATCTCATTTTCTGTGAAAGAWATCAAAATGAGGTTAACTGACAAAATGATGGTGATATTATGATAAACAATTTATTAGTTGACAAAATTTTTATATTTCTGACAGGAACCGAGATAATTGAGCTCAAAGTGCACATATAAAGTGAGCTTGTATTAGAAAAATTACAGTAGGCCAATAATATTTTTTAAATCTGAAAATGACCTCTAAAACCAATTCAATAAAAAATCAGTAGTCTAATATTTCAAGTCCGAATGAGACAAAGAAAAAGACAAAAAGGCGTCAAAAACGGCATGAAGTGTAAAAATCGAGTAGTTCTCTCATCAGAATCAAAAGGTGTGTAATGAAAAGAAAACATTTAGAGATGGGAAAAGAAGGAGAAGAAGAAGACGTGACGCCGTCGTCGGGGGCCACTTCAGAATCTACACAGTGTCTTTCAGAACTGGAAGATGAGAAGATGGTACACCATTTTCAAGTAGTTCCTGTACATTTGTTAGAGTGTCATAACCTTGGAACGGAGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCTAAAAACTCCAAATATAAAC</pcr_primer_p1>
		<pcr_primer_p2>GGTTTTAGAGGTCATTTTCAGAT</pcr_primer_p2>
		<pcr_amplicon_size>476</pcr_amplicon_size>
		<canonical_amplicon>TTTCCTAAAAACTCCAAATATAAACTTTAAAGATCGAAAACTATAAATTTCAGGTTGCAACTTTGAGCCCAAATATCTCATTTTCTGTAAAAGATATCGAAAAGTGACAAACTGACCAAATGTTTATCATGAAATCACAAAAATTGTATCAGTTGACAAAATTTTGATATCTCTAATGGGAAACGAGATAACATGAGCTCGAAGTGGACGGTTTTTGAGGGCGTCTATTAGAAGCTCACCCAGACCATCATCTTTGAGCCCTTATATCTCATTTTCTGTGAAAGAAATCAAAATGAGGTTAACTGACAAAATGATGGTGATATTATGATAAACAATTTATTAGTTGACAAAATTTTTATATTTCTGACAGGAACCGAGATAATTGAGCTCAAAGTGCACATATAAAGTGAGCTTGTATTAGAAAAATTACAGTAGGCCAATAATATTTTTTAAATCTGAAAATGACCTCTAAAACC</canonical_amplicon>
		<polymorphic_amplicon>TTTCCTAAAAACTCCAAATATAAACTTTAAAGATCGAAAACTATAAATTTCAGGTTGCAACTTTGAGCCCAAATATCTCATTTTCTGTAAAAGATATCGAAAAGTGACAAACTGACCAAATGTTTATCATGAAATCACAAAAATTGTATCAGTTGACAAAATTTTGATATCTCTAATGGGAAACGAGATAACATGAGCTCGAAGTGGACGGTTTTTGAGGGCGTCTATTAGAAGCTCACCCAGACCATCATCTTTGAGCCCTTATATCTCATTTTCTGTGAAAGAWATCAAAATGAGGTTAACTGACAAAATGATGGTGATATTATGATAAACAATTTATTAGTTGACAAAATTTTTATATTTCTGACAGGAACCGAGATAATTGAGCTCAAAGTGCACATATAAAGTGAGCTTGTATTAGAAAAATTACAGTAGGCCAATAATATTTTTTAAATCTGAAAATGACCTCTAAAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34299</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>77175</contig_pos>
        <strand></strand>
        <context>ccacaccact[G/A]gtcgtcggtt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTATGCTAGACTACAAACTACAAAGTAAGGACTAGTAGACCCACACCACT</left_flank>
        <right_flank>GTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCATTTGCGTGCACTCCATTATCAATTATCTCCGGATGCAACCGGTGATGGTTCCTAGGTAGGTCGGCATTGATGACGTGGCAATTGTGGGCGGAGCCTAGGCACGCCAAGCTGCCACGTTCCATCCACGCCTTGCGAGTTGAGAATGCTTGGCTGAAATCAAAGAAAAATGTTTGAAAAGGCTAGTTTTCAAGCTATTTATAACAGAAACGGCATGAATAGATTGGTCTGCTAGACTACAAACTACAAGGGCAACATTCGCAGACCAAAAGCTCTTGTCTTCGCCTTGCGTGAGCGTCGGTATGCTAGACTACAAACTACAAAAATAAGAATTAGCAGACCCAAATCATATCACGCATAGAGTCGTCAATTTGATCTGCTTGACTACAAACTACAAGGCAAACAATAGCAGACCCAAACCACTGGTCGCCGCCTGACGTTAGCTTTGGTATGCTAGACTACAAACTACAAAGTAAGGACTAGTAGACCCACACCACTGGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCCAAAAAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTCAAATGATGCTTCTGACCTTTTGGTATTTTCAGAAGATGCCACGTCATCTAGATTCTATGCAAAATAAATTCTCAGAAACCTA</canonical>
            <polymorphic>TCCATTTGCGTGCACTCCATTATCAATTATCTCCGGATGCAACCGGTGATGGTTCCTAGGTAGGTCGGCATTGATGACGTGGCAATTGTGGGCGGAGCCTAGGCACGCCAAGCTGCCACGTTCCATCCACGCCTTGCGAGTTGAGAATGCTTGGCTGAAATCAAAGAAAAATGTTTGAAAAGGCTAGTTTTCAAGCTATTTATAACAGAAACGGCATGAATAGATTGGTCTGCTAGACTACAAACTACAAGGGCAACATTCGCAGACCAAAAGCTCTTGTCTTCGCCTTGCGTGAGCGTCGGTATGCTAGACTACAAACTACAAAAATAAGAATTAGCAGACCCAAATCATATCACGCATAGAGTCGTCAATTTGATCTGCTTGACTACAAACTACAAGGCAAACAATAGCAGACCCAAACCACTGGTCGCCGCCTGACGTTAGCTTTGGTATGCTAGACTACAAACTACAAAGTAAGGACTAGTAGACCCACACCACTRGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCCAAAAAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTCAAATGATGCTTCTGACCTTTTGGTATTTTCAGAAGATGCCACGTCATCTAGATTCTATGCAAAATAAATTCTCAGAAACCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>BstXI</enzyme>
                </isoschizomers>
                <canonical_bands>503 423 74</canonical_bands>
                <polymorphic_bands>577 423</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAAAGAAAAATGTTTGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>GGAATTTTCGGTATTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>514</pcr_amplicon_size>
		<canonical_amplicon>ATCAAAGAAAAATGTTTGAAAAGGCTAGTTTTCAAGCTATTTATAACAGAAACGGCATGAATAGATTGGTCTGCTAGACTACAAACTACAAGGGCAACATTCGCAGACCAAAAGCTCTTGTCTTCGCCTTGCGTGAGCGTCGGTATGCTAGACTACAAACTACAAAAATAAGAATTAGCAGACCCAAATCATATCACGCATAGAGTCGTCAATTTGATCTGCTTGACTACAAACTACAAGGCAAACAATAGCAGACCCAAACCACTGGTCGCCGCCTGACGTTAGCTTTGGTATGCTAGACTACAAACTACAAAGTAAGGACTAGTAGACCCACACCACTGGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCC</canonical_amplicon>
		<polymorphic_amplicon>ATCAAAGAAAAATGTTTGAAAAGGCTAGTTTTCAAGCTATTTATAACAGAAACGGCATGAATAGATTGGTCTGCTAGACTACAAACTACAAGGGCAACATTCGCAGACCAAAAGCTCTTGTCTTCGCCTTGCGTGAGCGTCGGTATGCTAGACTACAAACTACAAAAATAAGAATTAGCAGACCCAAATCATATCACGCATAGAGTCGTCAATTTGATCTGCTTGACTACAAACTACAAGGCAAACAATAGCAGACCCAAACCACTGGTCGCCGCCTGACGTTAGCTTTGGTATGCTAGACTACAAACTACAAAGTAAGGACTAGTAGACCCACACCACTRGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34300</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>77256</contig_pos>
        <strand></strand>
        <context>atcttctcgg[C/T]gccttgcgcg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGG</left_flank>
        <right_flank>GCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAATTGTGGGCGGAGCCTAGGCACGCCAAGCTGCCACGTTCCATCCACGCCTTGCGAGTTGAGAATGCTTGGCTGAAATCAAAGAAAAATGTTTGAAAAGGCTAGTTTTCAAGCTATTTATAACAGAAACGGCATGAATAGATTGGTCTGCTAGACTACAAACTACAAGGGCAACATTCGCAGACCAAAAGCTCTTGTCTTCGCCTTGCGTGAGCGTCGGTATGCTAGACTACAAACTACAAAAATAAGAATTAGCAGACCCAAATCATATCACGCATAGAGTCGTCAATTTGATCTGCTTGACTACAAACTACAAGGCAAACAATAGCAGACCCAAACCACTGGTCGCCGCCTGACGTTAGCTTTGGTATGCTAGACTACAAACTACAAAGTAAGGACTAGTAGACCCACACCACTGGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCCAAAAAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTCAAATGATGCTTCTGACCTTTTGGTATTTTCAGAAGATGCCACGTCATCTAGATTCTATGCAAAATAAATTCTCAGAAACCTAAATTTTCCAGTAAAACATCAACCTTCTCGGGTGACTTTTCTCTTTCAGTAAACCTCTTAAGAAAATTGAGAAAATTGAAGA</canonical>
            <polymorphic>GCAATTGTGGGCGGAGCCTAGGCACGCCAAGCTGCCACGTTCCATCCACGCCTTGCGAGTTGAGAATGCTTGGCTGAAATCAAAGAAAAATGTTTGAAAAGGCTAGTTTTCAAGCTATTTATAACAGAAACGGCATGAATAGATTGGTCTGCTAGACTACAAACTACAAGGGCAACATTCGCAGACCAAAAGCTCTTGTCTTCGCCTTGCGTGAGCGTCGGTATGCTAGACTACAAACTACAAAAATAAGAATTAGCAGACCCAAATCATATCACGCATAGAGTCGTCAATTTGATCTGCTTGACTACAAACTACAAGGCAAACAATAGCAGACCCAAACCACTGGTCGCCGCCTGACGTTAGCTTTGGTATGCTAGACTACAAACTACAAAGTAAGGACTAGTAGACCCACACCACTGGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGYGCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCCAAAAAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTCAAATGATGCTTCTGACCTTTTGGTATTTTCAGAAGATGCCACGTCATCTAGATTCTATGCAAAATAAATTCTCAGAAACCTAAATTTTCCAGTAAAACATCAACCTTCTCGGGTGACTTTTCTCTTTCAGTAAACCTCTTAAGAAAATTGAGAAAATTGAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 488 7 2 2</canonical_bands>
                <polymorphic_bands>508 488 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCGCC</site>
                <isoschizomers>
                    <enzyme>BbeI</enzyme>
                    <enzyme>EgeI</enzyme>
                    <enzyme>EheI</enzyme>
                    <enzyme>KasI</enzyme>
                    <enzyme>Mly113I</enzyme>
                    <enzyme>NarI</enzyme>
                    <enzyme>SfoI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>495 327 150 28</canonical_bands>
                <polymorphic_bands>493 329 150 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAAAGAAAAATGTTTGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>GGAATTTTCGGTATTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>514</pcr_amplicon_size>
		<canonical_amplicon>ATCAAAGAAAAATGTTTGAAAAGGCTAGTTTTCAAGCTATTTATAACAGAAACGGCATGAATAGATTGGTCTGCTAGACTACAAACTACAAGGGCAACATTCGCAGACCAAAAGCTCTTGTCTTCGCCTTGCGTGAGCGTCGGTATGCTAGACTACAAACTACAAAAATAAGAATTAGCAGACCCAAATCATATCACGCATAGAGTCGTCAATTTGATCTGCTTGACTACAAACTACAAGGCAAACAATAGCAGACCCAAACCACTGGTCGCCGCCTGACGTTAGCTTTGGTATGCTAGACTACAAACTACAAAGTAAGGACTAGTAGACCCACACCACTGGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCC</canonical_amplicon>
		<polymorphic_amplicon>ATCAAAGAAAAATGTTTGAAAAGGCTAGTTTTCAAGCTATTTATAACAGAAACGGCATGAATAGATTGGTCTGCTAGACTACAAACTACAAGGGCAACATTCGCAGACCAAAAGCTCTTGTCTTCGCCTTGCGTGAGCGTCGGTATGCTAGACTACAAACTACAAAAATAAGAATTAGCAGACCCAAATCATATCACGCATAGAGTCGTCAATTTGATCTGCTTGACTACAAACTACAAGGCAAACAATAGCAGACCCAAACCACTGGTCGCCGCCTGACGTTAGCTTTGGTATGCTAGACTACAAACTACAAAGTAAGGACTAGTAGACCCACACCACTGGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGYGCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34301</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>77274</contig_pos>
        <strand></strand>
        <context>gcgcgctttg[A/G]tctgctagac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTG</left_flank>
        <right_flank>TCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGGCACGCCAAGCTGCCACGTTCCATCCACGCCTTGCGAGTTGAGAATGCTTGGCTGAAATCAAAGAAAAATGTTTGAAAAGGCTAGTTTTCAAGCTATTTATAACAGAAACGGCATGAATAGATTGGTCTGCTAGACTACAAACTACAAGGGCAACATTCGCAGACCAAAAGCTCTTGTCTTCGCCTTGCGTGAGCGTCGGTATGCTAGACTACAAACTACAAAAATAAGAATTAGCAGACCCAAATCATATCACGCATAGAGTCGTCAATTTGATCTGCTTGACTACAAACTACAAGGCAAACAATAGCAGACCCAAACCACTGGTCGCCGCCTGACGTTAGCTTTGGTATGCTAGACTACAAACTACAAAGTAAGGACTAGTAGACCCACACCACTGGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCCAAAAAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTCAAATGATGCTTCTGACCTTTTGGTATTTTCAGAAGATGCCACGTCATCTAGATTCTATGCAAAATAAATTCTCAGAAACCTAAATTTTCCAGTAAAACATCAACCTTCTCGGGTGACTTTTCTCTTTCAGTAAACCTCTTAAGAAAATTGAGAAAATTGAAGAAGGGGGGGGGGGGGGGGC</canonical>
            <polymorphic>TAGGCACGCCAAGCTGCCACGTTCCATCCACGCCTTGCGAGTTGAGAATGCTTGGCTGAAATCAAAGAAAAATGTTTGAAAAGGCTAGTTTTCAAGCTATTTATAACAGAAACGGCATGAATAGATTGGTCTGCTAGACTACAAACTACAAGGGCAACATTCGCAGACCAAAAGCTCTTGTCTTCGCCTTGCGTGAGCGTCGGTATGCTAGACTACAAACTACAAAAATAAGAATTAGCAGACCCAAATCATATCACGCATAGAGTCGTCAATTTGATCTGCTTGACTACAAACTACAAGGCAAACAATAGCAGACCCAAACCACTGGTCGCCGCCTGACGTTAGCTTTGGTATGCTAGACTACAAACTACAAAGTAAGGACTAGTAGACCCACACCACTGGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTGRTCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCCAAAAAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTCAAATGATGCTTCTGACCTTTTGGTATTTTCAGAAGATGCCACGTCATCTAGATTCTATGCAAAATAAATTCTCAGAAACCTAAATTTTCCAGTAAAACATCAACCTTCTCGGGTGACTTTTCTCTTTCAGTAAACCTCTTAAGAAAATTGAGAAAATTGAAGAAGGGGGGGGGGGGGGGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>502 275 195 28</canonical_bands>
                <polymorphic_bands>530 275 195</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAAAGAAAAATGTTTGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>GGAATTTTCGGTATTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>514</pcr_amplicon_size>
		<canonical_amplicon>ATCAAAGAAAAATGTTTGAAAAGGCTAGTTTTCAAGCTATTTATAACAGAAACGGCATGAATAGATTGGTCTGCTAGACTACAAACTACAAGGGCAACATTCGCAGACCAAAAGCTCTTGTCTTCGCCTTGCGTGAGCGTCGGTATGCTAGACTACAAACTACAAAAATAAGAATTAGCAGACCCAAATCATATCACGCATAGAGTCGTCAATTTGATCTGCTTGACTACAAACTACAAGGCAAACAATAGCAGACCCAAACCACTGGTCGCCGCCTGACGTTAGCTTTGGTATGCTAGACTACAAACTACAAAGTAAGGACTAGTAGACCCACACCACTGGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCC</canonical_amplicon>
		<polymorphic_amplicon>ATCAAAGAAAAATGTTTGAAAAGGCTAGTTTTCAAGCTATTTATAACAGAAACGGCATGAATAGATTGGTCTGCTAGACTACAAACTACAAGGGCAACATTCGCAGACCAAAAGCTCTTGTCTTCGCCTTGCGTGAGCGTCGGTATGCTAGACTACAAACTACAAAAATAAGAATTAGCAGACCCAAATCATATCACGCATAGAGTCGTCAATTTGATCTGCTTGACTACAAACTACAAGGCAAACAATAGCAGACCCAAACCACTGGTCGCCGCCTGACGTTAGCTTTGGTATGCTAGACTACAAACTACAAAGTAAGGACTAGTAGACCCACACCACTGGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTGRTCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34302</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>77308</contig_pos>
        <strand></strand>
        <context>gtgaacatta[A/G]cagacccaAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTA</left_flank>
        <right_flank>CAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCCAAAAAAAACT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCGAGTTGAGAATGCTTGGCTGAAATCAAAGAAAAATGTTTGAAAAGGCTAGTTTTCAAGCTATTTATAACAGAAACGGCATGAATAGATTGGTCTGCTAGACTACAAACTACAAGGGCAACATTCGCAGACCAAAAGCTCTTGTCTTCGCCTTGCGTGAGCGTCGGTATGCTAGACTACAAACTACAAAAATAAGAATTAGCAGACCCAAATCATATCACGCATAGAGTCGTCAATTTGATCTGCTTGACTACAAACTACAAGGCAAACAATAGCAGACCCAAACCACTGGTCGCCGCCTGACGTTAGCTTTGGTATGCTAGACTACAAACTACAAAGTAAGGACTAGTAGACCCACACCACTGGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCCAAAAAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTCAAATGATGCTTCTGACCTTTTGGTATTTTCAGAAGATGCCACGTCATCTAGATTCTATGCAAAATAAATTCTCAGAAACCTAAATTTTCCAGTAAAACATCAACCTTCTCGGGTGACTTTTCTCTTTCAGTAAACCTCTTAAGAAAATTGAGAAAATTGAAGAAGGGGGGGGGGGGGGGGCAAAAAGAGGCCGAGGAATGAGAAAATGAGAAATT</canonical>
            <polymorphic>TTGCGAGTTGAGAATGCTTGGCTGAAATCAAAGAAAAATGTTTGAAAAGGCTAGTTTTCAAGCTATTTATAACAGAAACGGCATGAATAGATTGGTCTGCTAGACTACAAACTACAAGGGCAACATTCGCAGACCAAAAGCTCTTGTCTTCGCCTTGCGTGAGCGTCGGTATGCTAGACTACAAACTACAAAAATAAGAATTAGCAGACCCAAATCATATCACGCATAGAGTCGTCAATTTGATCTGCTTGACTACAAACTACAAGGCAAACAATAGCAGACCCAAACCACTGGTCGCCGCCTGACGTTAGCTTTGGTATGCTAGACTACAAACTACAAAGTAAGGACTAGTAGACCCACACCACTGGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTARCAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCCAAAAAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTCAAATGATGCTTCTGACCTTTTGGTATTTTCAGAAGATGCCACGTCATCTAGATTCTATGCAAAATAAATTCTCAGAAACCTAAATTTTCCAGTAAAACATCAACCTTCTCGGGTGACTTTTCTCTTTCAGTAAACCTCTTAAGAAAATTGAGAAAATTGAAGAAGGGGGGGGGGGGGGGGCAAAAAGAGGCCGAGGAATGAGAAAATGAGAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>376 299 128 121 76</canonical_bands>
                <polymorphic_bands>376 299 249 76</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAAAGAAAAATGTTTGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>AATTTTCGGATTTTGAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>539</pcr_amplicon_size>
		<canonical_amplicon>ATCAAAGAAAAATGTTTGAAAAGGCTAGTTTTCAAGCTATTTATAACAGAAACGGCATGAATAGATTGGTCTGCTAGACTACAAACTACAAGGGCAACATTCGCAGACCAAAAGCTCTTGTCTTCGCCTTGCGTGAGCGTCGGTATGCTAGACTACAAACTACAAAAATAAGAATTAGCAGACCCAAATCATATCACGCATAGAGTCGTCAATTTGATCTGCTTGACTACAAACTACAAGGCAAACAATAGCAGACCCAAACCACTGGTCGCCGCCTGACGTTAGCTTTGGTATGCTAGACTACAAACTACAAAGTAAGGACTAGTAGACCCACACCACTGGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCCAAAAAAAACTCAAAATCCGAAAATT</canonical_amplicon>
		<polymorphic_amplicon>ATCAAAGAAAAATGTTTGAAAAGGCTAGTTTTCAAGCTATTTATAACAGAAACGGCATGAATAGATTGGTCTGCTAGACTACAAACTACAAGGGCAACATTCGCAGACCAAAAGCTCTTGTCTTCGCCTTGCGTGAGCGTCGGTATGCTAGACTACAAACTACAAAAATAAGAATTAGCAGACCCAAATCATATCACGCATAGAGTCGTCAATTTGATCTGCTTGACTACAAACTACAAGGCAAACAATAGCAGACCCAAACCACTGGTCGCCGCCTGACGTTAGCTTTGGTATGCTAGACTACAAACTACAAAGTAAGGACTAGTAGACCCACACCACTGGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTARCAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCCAAAAAAAACTCAAAATCCGAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34303</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>77381</contig_pos>
        <strand></strand>
        <context>ATTCCAAAAA[T/A]CTCGAAAGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAAAATACCGAAAATTCCAAAAAAAACTCAAAATCCGAAAATTCCAAAAA</left_flank>
        <right_flank>CTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAACGGCATGAATAGATTGGTCTGCTAGACTACAAACTACAAGGGCAACATTCGCAGACCAAAAGCTCTTGTCTTCGCCTTGCGTGAGCGTCGGTATGCTAGACTACAAACTACAAAAATAAGAATTAGCAGACCCAAATCATATCACGCATAGAGTCGTCAATTTGATCTGCTTGACTACAAACTACAAGGCAAACAATAGCAGACCCAAACCACTGGTCGCCGCCTGACGTTAGCTTTGGTATGCTAGACTACAAACTACAAAGTAAGGACTAGTAGACCCACACCACTGGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCCAAAAAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTCAAATGATGCTTCTGACCTTTTGGTATTTTCAGAAGATGCCACGTCATCTAGATTCTATGCAAAATAAATTCTCAGAAACCTAAATTTTCCAGTAAAACATCAACCTTCTCGGGTGACTTTTCTCTTTCAGTAAACCTCTTAAGAAAATTGAGAAAATTGAAGAAGGGGGGGGGGGGGGGGCAAAAAGAGGCCGAGGAATGAGAAAATGAGAAATTGGAGGAATAGGGTAGAAGAGCCGACTAAAAAAAGAACCATGTAATTTCCGGACGGACGGAGCAAAAGTCTTAG</canonical>
            <polymorphic>AGAAACGGCATGAATAGATTGGTCTGCTAGACTACAAACTACAAGGGCAACATTCGCAGACCAAAAGCTCTTGTCTTCGCCTTGCGTGAGCGTCGGTATGCTAGACTACAAACTACAAAAATAAGAATTAGCAGACCCAAATCATATCACGCATAGAGTCGTCAATTTGATCTGCTTGACTACAAACTACAAGGCAAACAATAGCAGACCCAAACCACTGGTCGCCGCCTGACGTTAGCTTTGGTATGCTAGACTACAAACTACAAAGTAAGGACTAGTAGACCCACACCACTGGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCCAAAAAAAACTCAAAATCCGAAAATTCCAAAAAWCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTCAAATGATGCTTCTGACCTTTTGGTATTTTCAGAAGATGCCACGTCATCTAGATTCTATGCAAAATAAATTCTCAGAAACCTAAATTTTCCAGTAAAACATCAACCTTCTCGGGTGACTTTTCTCTTTCAGTAAACCTCTTAAGAAAATTGAGAAAATTGAAGAAGGGGGGGGGGGGGGGGCAAAAAGAGGCCGAGGAATGAGAAAATGAGAAATTGGAGGAATAGGGTAGAAGAGCCGACTAAAAAAAGAACCATGTAATTTCCGGACGGACGGAGCAAAAGTCTTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>501 215 99 66 57 37 25</canonical_bands>
                <polymorphic_bands>567 215 99 57 37 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAAAGAAAAATGTTTGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCATTTTTATCGTTAGTGC</pcr_primer_p2>
		<pcr_amplicon_size>703</pcr_amplicon_size>
		<canonical_amplicon>ATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AWCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34304</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>77411</contig_pos>
        <strand>+</strand>
        <context>TCTGAAATTC[G/T]AAAAAAAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTC</left_flank>
        <right_flank>AAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTACAAACTACAAGGGCAACATTCGCAGACCAAAAGCTCTTGTCTTCGCCTTGCGTGAGCGTCGGTATGCTAGACTACAAACTACAAAAATAAGAATTAGCAGACCCAAATCATATCACGCATAGAGTCGTCAATTTGATCTGCTTGACTACAAACTACAAGGCAAACAATAGCAGACCCAAACCACTGGTCGCCGCCTGACGTTAGCTTTGGTATGCTAGACTACAAACTACAAAGTAAGGACTAGTAGACCCACACCACTGGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCCAAAAAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTCAAATGATGCTTCTGACCTTTTGGTATTTTCAGAAGATGCCACGTCATCTAGATTCTATGCAAAATAAATTCTCAGAAACCTAAATTTTCCAGTAAAACATCAACCTTCTCGGGTGACTTTTCTCTTTCAGTAAACCTCTTAAGAAAATTGAGAAAATTGAAGAAGGGGGGGGGGGGGGGGCAAAAAGAGGCCGAGGAATGAGAAAATGAGAAATTGGAGGAATAGGGTAGAAGAGCCGACTAAAAAAAGAACCATGTAATTTCCGGACGGACGGAGCAAAAGTCTTAGATTCCGTGAAGTAATGGGTACCCGCCTATT</canonical>
            <polymorphic>ACTACAAACTACAAGGGCAACATTCGCAGACCAAAAGCTCTTGTCTTCGCCTTGCGTGAGCGTCGGTATGCTAGACTACAAACTACAAAAATAAGAATTAGCAGACCCAAATCATATCACGCATAGAGTCGTCAATTTGATCTGCTTGACTACAAACTACAAGGCAAACAATAGCAGACCCAAACCACTGGTCGCCGCCTGACGTTAGCTTTGGTATGCTAGACTACAAACTACAAAGTAAGGACTAGTAGACCCACACCACTGGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCCAAAAAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCKAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTCAAATGATGCTTCTGACCTTTTGGTATTTTCAGAAGATGCCACGTCATCTAGATTCTATGCAAAATAAATTCTCAGAAACCTAAATTTTCCAGTAAAACATCAACCTTCTCGGGTGACTTTTCTCTTTCAGTAAACCTCTTAAGAAAATTGAGAAAATTGAAGAAGGGGGGGGGGGGGGGGCAAAAAGAGGCCGAGGAATGAGAAAATGAGAAATTGGAGGAATAGGGTAGAAGAGCCGACTAAAAAAAGAACCATGTAATTTCCGGACGGACGGAGCAAAAGTCTTAGATTCCGTGAAGTAATGGGTACCCGCCTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTCAAAATCCGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCTGGAAATTCCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCKAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34305</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>77494</contig_pos>
        <strand>+</strand>
        <context>TCCAGAAAGC[A/G]AAAAAAAAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGC</left_flank>
        <right_flank>AAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACAAAAATAAGAATTAGCAGACCCAAATCATATCACGCATAGAGTCGTCAATTTGATCTGCTTGACTACAAACTACAAGGCAAACAATAGCAGACCCAAACCACTGGTCGCCGCCTGACGTTAGCTTTGGTATGCTAGACTACAAACTACAAAGTAAGGACTAGTAGACCCACACCACTGGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCCAAAAAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTCAAATGATGCTTCTGACCTTTTGGTATTTTCAGAAGATGCCACGTCATCTAGATTCTATGCAAAATAAATTCTCAGAAACCTAAATTTTCCAGTAAAACATCAACCTTCTCGGGTGACTTTTCTCTTTCAGTAAACCTCTTAAGAAAATTGAGAAAATTGAAGAAGGGGGGGGGGGGGGGGCAAAAAGAGGCCGAGGAATGAGAAAATGAGAAATTGGAGGAATAGGGTAGAAGAGCCGACTAAAAAAAGAACCATGTAATTTCCGGACGGACGGAGCAAAAGTCTTAGATTCCGTGAAGTAATGGGTACCCGCCTATTACGAAGCGGCGAAGGAGGAAATTTGCTCTGTATAGTTTTGTTTATAGGATATCTGGAGGTCTGCTGGACTACAAACTACAAAA</canonical>
            <polymorphic>TACAAAAATAAGAATTAGCAGACCCAAATCATATCACGCATAGAGTCGTCAATTTGATCTGCTTGACTACAAACTACAAGGCAAACAATAGCAGACCCAAACCACTGGTCGCCGCCTGACGTTAGCTTTGGTATGCTAGACTACAAACTACAAAGTAAGGACTAGTAGACCCACACCACTGGTCGTCGGTTAACGTTAGCCCTGGGTATGCAAGACTACAAACTACAGTGTAAGGACTAGCAGACCCATTGATCTTCTCGGCGCCTTGCGCGCGCTTTGATCTGCTAGACTACAAACTACAAAGTGAACATTAACAGACCCAAATTCAAAATTTTCAAAAATACCGAAAATTCCAAAAAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCRAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTCAAATGATGCTTCTGACCTTTTGGTATTTTCAGAAGATGCCACGTCATCTAGATTCTATGCAAAATAAATTCTCAGAAACCTAAATTTTCCAGTAAAACATCAACCTTCTCGGGTGACTTTTCTCTTTCAGTAAACCTCTTAAGAAAATTGAGAAAATTGAAGAAGGGGGGGGGGGGGGGGCAAAAAGAGGCCGAGGAATGAGAAAATGAGAAATTGGAGGAATAGGGTAGAAGAGCCGACTAAAAAAAGAACCATGTAATTTCCGGACGGACGGAGCAAAAGTCTTAGATTCCGTGAAGTAATGGGTACCCGCCTATTACGAAGCGGCGAAGGAGGAAATTTGCTCTGTATAGTTTTGTTTATAGGATATCTGGAGGTCTGCTGGACTACAAACTACAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTCAAAATCCGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCTGGAAATTCCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCAAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTCAAAATCCGAAAATTCCAAAAATCTCGAAAGATTCAAATAAATCTGAAATTCAAAAAAAAACTGTATAGCTAGATTAAACCTTGGGTTTCTAGACTACAAACTACAAAAATGAGTGGAAGAATCTTCCAGAAAGCRAAAAAAAAGGATGTACAATGGCACTAACGATAAAAATGAAAAATTCATTAGAATCCCTGTTCTAAAATTCTGAAAAAAAGAAGGAATTTCCAGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34306</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>79412</contig_pos>
        <strand></strand>
        <context>gatatatcgg[T/C]tcaaagttga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TATCAATTGACAACTTTTCCATAACTTTGACGAAAAACGAGATATATCGG</left_flank>
        <right_flank>TCAAAGTTGACGGTTCTAATGCGCACGATTTTGGTCGGTCTGCTAGTGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAAAATGAGTCCTGTCCGTGTGAGGTCCATCCCCCCGTATGACGGGTCTCTCTCTCTCTCTCGGAAAATGGTGGGGGAAAAGTAGGAAACTCAATCCGTCAACCCAAATTTCTTCTTCTTCTCTTTTCGTTATACATGGGAGGAGGATAGCAAAAAGGAGAGAAAAATTTGGGGAGGGGATGAGTTATTTAGAAAGAGCGCTGACAGGAAAGAACACGAAATTTTTTGGTTTGGTGGTGGTACTAAAAAAGGATTTATGGGGGTTTTGAGATTTGAGAAATCGAGGTTTTCAGAGAAAAAGATAAAAAATTGACTAGAAAACCTGGTTTTTAACAAAAACCTGGAAAAAGAGCACTATAAAGTTTGAGCTCAATTATCTCGGCTCTTCTAAGAGATATCAAAAATCTTTCAACTGATAAAATACTTCTGATATTATGATAAACAATTTATCAATTGACAACTTTTCCATAACTTTGACGAAAAACGAGATATATCGGTTCAAAGTTGACGGTTCTAATGCGCACGATTTTGGTCGGTCTGCTAGTGTTTCTGAGTTTGTAGTCTAGCAGACCAAAATTCTAACTTTTCCCTCATTTTTAAAGAAAAATCTGAAAAATTAGGTTTAAAAATAGTATACTACGTAATACTAGCAAAAAAGAATATCAGGTTACCCAGAAAATGTGAATATAGGTAGAAAAAAAAAGTTTGCAACAAGTCTAGAAGAAAAAAAAAGGGAAAAAATATCAAACATTTTCGGTCTGCTAGACTACAAACTACAATGGATGAATTAGCGGACCCAAATCGCTTGACGTTAGTGTTGGTCTGCTAGACCACAAACTACGAAAATTGGAATTAGCAAATCCAAATTCAGAAAATTCCAAAATAACCCAAAAATTCCGCAAATTCGGAAGATTCCGAGATTCCAAAAAATTCCAAAAACTTCGAAAATTCTGAAAAAACTCAAAAATTTGAAAACTCTGAAAAACCTGTATAATTAG</canonical>
            <polymorphic>AACAAAATGAGTCCTGTCCGTGTGAGGTCCATCCCCCCGTATGACGGGTCTCTCTCTCTCTCTCGGAAAATGGTGGGGGAAAAGTAGGAAACTCAATCCGTCAACCCAAATTTCTTCTTCTTCTCTTTTCGTTATACATGGGAGGAGGATAGCAAAAAGGAGAGAAAAATTTGGGGAGGGGATGAGTTATTTAGAAAGAGCGCTGACAGGAAAGAACACGAAATTTTTTGGTTTGGTGGTGGTACTAAAAAAGGATTTATGGGGGTTTTGAGATTTGAGAAATCGAGGTTTTCAGAGAAAAAGATAAAAAATTGACTAGAAAACCTGGTTTTTAACAAAAACCTGGAAAAAGAGCACTATAAAGTTTGAGCTCAATTATCTCGGCTCTTCTAAGAGATATCAAAAATCTTTCAACTGATAAAATACTTCTGATATTATGATAAACAATTTATCAATTGACAACTTTTCCATAACTTTGACGAAAAACGAGATATATCGGYTCAAAGTTGACGGTTCTAATGCGCACGATTTTGGTCGGTCTGCTAGTGTTTCTGAGTTTGTAGTCTAGCAGACCAAAATTCTAACTTTTCCCTCATTTTTAAAGAAAAATCTGAAAAATTAGGTTTAAAAATAGTATACTACGTAATACTAGCAAAAAAGAATATCAGGTTACCCAGAAAATGTGAATATAGGTAGAAAAAAAAAGTTTGCAACAAGTCTAGAAGAAAAAAAAAGGGAAAAAATATCAAACATTTTCGGTCTGCTAGACTACAAACTACAATGGATGAATTAGCGGACCCAAATCGCTTGACGTTAGTGTTGGTCTGCTAGACCACAAACTACGAAAATTGGAATTAGCAAATCCAAATTCAGAAAATTCCAAAATAACCCAAAAATTCCGCAAATTCGGAAGATTCCGAGATTCCAAAAAATTCCAAAAACTTCGAAAATTCTGAAAAAACTCAAAAATTTGAAAACTCTGAAAAACCTGTATAATTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTTCAGAGAAAAAGATAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TCTTTAAAAATGAGGGAAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>319</pcr_amplicon_size>
		<canonical_amplicon>GGTTTTCAGAGAAAAAGATAAAAAATTGACTAGAAAACCTGGTTTTTAACAAAAACCTGGAAAAAGAGCACTATAAAGTTTGAGCTCAATTATCTCGGCTCTTCTAAGAGATATCAAAAATCTTTCAACTGATAAAATACTTCTGATATTATGATAAACAATTTATCAATTGACAACTTTTCCATAACTTTGACGAAAAACGAGATATATCGGTTCAAAGTTGACGGTTCTAATGCGCACGATTTTGGTCGGTCTGCTAGTGTTTCTGAGTTTGTAGTCTAGCAGACCAAAATTCTAACTTTTCCCTCATTTTTAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GGTTTTCAGAGAAAAAGATAAAAAATTGACTAGAAAACCTGGTTTTTAACAAAAACCTGGAAAAAGAGCACTATAAAGTTTGAGCTCAATTATCTCGGCTCTTCTAAGAGATATCAAAAATCTTTCAACTGATAAAATACTTCTGATATTATGATAAACAATTTATCAATTGACAACTTTTCCATAACTTTGACGAAAAACGAGATATATCGGYTCAAAGTTGACGGTTCTAATGCGCACGATTTTGGTCGGTCTGCTAGTGTTTCTGAGTTTGTAGTCTAGCAGACCAAAATTCTAACTTTTCCCTCATTTTTAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34307</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>110019</contig_pos>
        <strand>+</strand>
        <context>TCCTTCTCAA[A/C]AAAGATCGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGATTCAGATGAGCAGCTTAGCCACGGATGGATTGAAACATCCTTCTCAA</left_flank>
        <right_flank>AAAGATCGGATTTTCGGAAATCCTCACAGAAATAGTTTAATAAAAATAAA</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCAAGATATGAGTTTTCAGATGTGTACTTTTACTAGAAACTTCTGTCGATTGCATTTCTGTCGATTGAAAGGAAAAATTTAGTATATAATACCAGTCATTTCAATAGACCTCTTAGTTTGCGATCCCAGAAAAATCTAGGGATATCAATAAGCCTTTTCAGAAAGATAATCCAATTTGATCATCATTACTAGAGTTTTCAGGCGGCTTTCAGAAGAAAAACCAGGATTAATTGATAAGGTTGTCATTGATAACCTTTTGGTTCATAAGAGTTGGGTGTCTAAAACTGGATAAGAAAGATCTAACGGGTTTTGGGAGGACAGCCTGATTTCTTAATGACCGGAATGGCTTCCAAATCACTGATGATATGCTCTTTTCAGATTCAATTTTTTTTCAGATATCCCGAACTTCAGATCCCCCAAAAACTATTAAAAAACATAATATGGGACAGATTCAGATGAGCAGCTTAGCCACGGATGGATTGAAACATCCTTCTCAACAAAGATCGGATTTTCGGAAATCCTCACAGAAATAGTTTAATAAAAATAAACATTTTGAAGCTTCAAAAAATTCAAACTTTTTTCATGTCCCCTATAATGTCCCCTAAATGTCCTGTCCCCTTCATGTCCCCTGTCCTTTCAATTCTTCTCCTTTCCATTTCTATGGACTTTTTTGAAAAAAACGGAAATTGGTTTTTGTAGAAATTTATAGAAATTTTCAGTGTGTATTTTTTTTCAATTTCCTGGATTTCAATATCTTTTCAATAGCTTTGTATCTTTAATCTGGATTAAATGTATAAGTTTAGAATTTTAGATTCTTCTAGAATGACTAATCTCTCAGAATTGAAATCGATGAAAATCAAACTACACATGAAATGTATTGCTTGTGGCTGACACAAATAACATGAAATTCGAAATGATTTCAGAATTTCAGACACAAAATTACGAATTTCTTGACATTTCAGATTTATAATTGACGCTGAAATTTGGCTCTGAAATTA</canonical>
            <polymorphic>AACCAAGATATGAGTTTTCAGATGTGTACTTTTACTAGAAACTTCTGTCGATTGCATTTCTGTCGATTGAAAGGAAAAATTTAGTATATAATACCAGTCATTTCAATAGACCTCTTAGTTTGCGATCCCAGAAAAATCTAGGGATATCAATAAGCCTTTTCAGAAAGATAATCCAATTTGATCATCATTACTAGAGTTTTCAGGCGGCTTTCAGAAGAAAAACCAGGATTAATTGATAAGGTTGTCATTGATAACCTTTTGGTTCATAAGAGTTGGGTGTCTAAAACTGGATAAGAAAGATCTAACGGGTTTTGGGAGGACAGCCTGATTTCTTAATGACCGGAATGGCTTCCAAATCACTGATGATATGCTCTTTTCAGATTCAATTTTTTTTCAGATATCCCGAACTTCAGATCCCCCAAAAACTATTAAAAAACATAATATGGGACAGATTCAGATGAGCAGCTTAGCCACGGATGGATTGAAACATCCTTCTCAAMAAAGATCGGATTTTCGGAAATCCTCACAGAAATAGTTTAATAAAAATAAACATTTTGAAGCTTCAAAAAATTCAAACTTTTTTCATGTCCCCTATAATGTCCCCTAAATGTCCTGTCCCCTTCATGTCCCCTGTCCTTTCAATTCTTCTCCTTTCCATTTCTATGGACTTTTTTGAAAAAAACGGAAATTGGTTTTTGTAGAAATTTATAGAAATTTTCAGTGTGTATTTTTTTTCAATTTCCTGGATTTCAATATCTTTTCAATAGCTTTGTATCTTTAATCTGGATTAAATGTATAAGTTTAGAATTTTAGATTCTTCTAGAATGACTAATCTCTCAGAATTGAAATCGATGAAAATCAAACTACACATGAAATGTATTGCTTGTGGCTGACACAAATAACATGAAATTCGAAATGATTTCAGAATTTCAGACACAAAATTACGAATTTCTTGACATTTCAGATTTATAATTGACGCTGAAATTTGGCTCTGAAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATATGCTCTTTTCAGATTCA</pcr_primer_p1>
		<pcr_primer_p2>AGGACATTTAGGGGACATTATAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATGATATGCTCTTTTCAGATTCAATTTTTTTTCAGATATCCCGAACTTCAGATCCCCCAAAAACTATTAAAAAACATAATATGGGACAGATTCAGATGAGCAGCTTAGCCACGGATGGATTGAAACATCCTTCTCAACAAAGATCGGATTTTCGGAAATCCTCACAGAAATAGTTTAATAAAAATAAACATTTTGAAGCTTCAAAAAATTCAAACTTTTTTCATGTCCCCTATAATGTCCCCTAAATGTCCT</canonical_amplicon>
		<polymorphic_amplicon>ATGATATGCTCTTTTCAGATTCAATTTTTTTTCAGATATCCCGAACTTCAGATCCCCCAAAAACTATTAAAAAACATAATATGGGACAGATTCAGATGAGCAGCTTAGCCACGGATGGATTGAAACATCCTTCTCAAMAAAGATCGGATTTTCGGAAATCCTCACAGAAATAGTTTAATAAAAATAAACATTTTGAAGCTTCAAAAAATTCAAACTTTTTTCATGTCCCCTATAATGTCCCCTAAATGTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34308</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>120086</contig_pos>
        <strand>+</strand>
        <context>TGAAAACTCA[C/T]TTTTTTTGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATAGTCAACTAATCCCTCCCGTATAGTTAGTATCTTGTCTGAAAACTCA</left_flank>
        <right_flank>TTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGGAAAACGCACAGATATTGGAATTATGTACCAGAATGTGGAGTTTTGAGTTTTAAGGCTCTATAGGATGATAAGTGTAGAAATGTGACTCAATTTCTTTTGGGTCTTTCTAATGGACCCCAATTTACATATAAGAAAAATGTCAGCAAACAGTAATGCCTCCATGAATATGCTGTCTCTCAGGCTTAGTTTTTTTTGTATAAAATATATCATCAATACGCACTTTTTGAATAAGATCCCAGAATTTTACTTTCTCGCACACTTTTTGTTTTTTCCAATTTCGGACTTTTATTTTTTCTTGGGACCTCTATTTCATTTTCGGACCTCTAAACTAGAAGAGAGCCCAATCATCTTCAAGAACCCAGAACCTGGATAAAATAATCCCAACTAGGAACATTTTATTTTCCTAATAGGATTATTTCCTTTCTGGAAGGCGTTAGGCTTCTGAATAGTCAACTAATCCCTCCCGTATAGTTAGTATCTTGTCTGAAAACTCATTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTATGCTCATTAAAACAGTTCATCGATGCTGAAAAATTGGAATGGAAAATGGATAATGCATGATTGGAGCTGAAATTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAACCTGAGCAATTGAGAATTCAAGAATTTTATTATTGGGGTAAATATCTATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTGCTGAGCATTCTAGAAATACATTTTTCTAGAAGGGTCTAGCACAAGAATGGTCGGAAAAGGATGAATACTACAGTAATCCAAGAAAAACAGCATAGAAATTTCTAAACCTAAAATCTCAGATCAAATTTTTGGCTTACATTTCGGAAGATATTAAAAACT</canonical>
            <polymorphic>ATTGGAAAACGCACAGATATTGGAATTATGTACCAGAATGTGGAGTTTTGAGTTTTAAGGCTCTATAGGATGATAAGTGTAGAAATGTGACTCAATTTCTTTTGGGTCTTTCTAATGGACCCCAATTTACATATAAGAAAAATGTCAGCAAACAGTAATGCCTCCATGAATATGCTGTCTCTCAGGCTTAGTTTTTTTTGTATAAAATATATCATCAATACGCACTTTTTGAATAAGATCCCAGAATTTTACTTTCTCGCACACTTTTTGTTTTTTCCAATTTCGGACTTTTATTTTTTCTTGGGACCTCTATTTCATTTTCGGACCTCTAAACTAGAAGAGAGCCCAATCATCTTCAAGAACCCAGAACCTGGATAAAATAATCCCAACTAGGAACATTTTATTTTCCTAATAGGATTATTTCCTTTCTGGAAGGCGTTAGGCTTCTGAATAGTCAACTAATCCCTCCCGTATAGTTAGTATCTTGTCTGAAAACTCAYTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTATGCTCATTAAAACAGTTCATCGATGCTGAAAAATTGGAATGGAAAATGGATAATGCATGATTGGAGCTGAAATTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAACCTGAGCAATTGAGAATTCAAGAATTTTATTATTGGGGTAAATATCTATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTGCTGAGCATTCTAGAAATACATTTTTCTAGAAGGGTCTAGCACAAGAATGGTCGGAAAAGGATGAATACTACAGTAATCCAAGAAAAACAGCATAGAAATTTCTAAACCTAAAATCTCAGATCAAATTTTTGGCTTACATTTCGGAAGATATTAAAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAATAATCCCAACTAGGAACA</pcr_primer_p1>
		<pcr_primer_p2>TACATGATCTGTCAAGTCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TAAAATAATCCCAACTAGGAACATTTTATTTTCCTAATAGGATTATTTCCTTTCTGGAAGGCGTTAGGCTTCTGAATAGTCAACTAATCCCTCCCGTATAGTTAGTATCTTGTCTGAAAACTCATTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTA</canonical_amplicon>
		<polymorphic_amplicon>TAAAATAATCCCAACTAGGAACATTTTATTTTCCTAATAGGATTATTTCCTTTCTGGAAGGCGTTAGGCTTCTGAATAGTCAACTAATCCCTCCCGTATAGTTAGTATCTTGTCTGAAAACTCAYTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34309</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>120556</contig_pos>
        <strand>+</strand>
        <context>GATCAAATTT[G/T]TGGCTTWCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAAGAAAAACAGCATAGAAATTTCTAAACCTAAAATCTCAGATCAAATTT</left_flank>
        <right_flank>TGGCTTACATTTCGGAAGATATTAAAAACTACCGTACACCAAAACAATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATAGTTAGTATCTTGTCTGAAAACTCATTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTATGCTCATTAAAACAGTTCATCGATGCTGAAAAATTGGAATGGAAAATGGATAATGCATGATTGGAGCTGAAATTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAACCTGAGCAATTGAGAATTCAAGAATTTTATTATTGGGGTAAATATCTATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTGCTGAGCATTCTAGAAATACATTTTTCTAGAAGGGTCTAGCACAAGAATGGTCGGAAAAGGATGAATACTACAGTAATCCAAGAAAAACAGCATAGAAATTTCTAAACCTAAAATCTCAGATCAAATTTTTGGCTTACATTTCGGAAGATATTAAAAACTACCGTACACCAAAACAATAATAATTTCTGAATCTAGAAAACATATTCAAACTGAATTTAGAAGTCAAATTTCAGATTCTCCATAGTCAAAAACTCTCAATTTCCTTTTTTTTTCAAAATTATAAGAAGTTTTCAAAATTTGAAGGTTTGATCTCTCTAGGGATGAGTAATGGGAAGAAACATGGAAAATTTGATCATCTGCAAAAAAGATTCTTTTAATAAATCTGAGCATTTGAGGATTCCAGAAATTCTTTTTTCTGGAAAACAATTGAGCAGGAATCCGAAAAAAAATTGATCGGAGGATTTGAGAATCCTAGAAATCCATTATAGGAGAGATCAGAGGAAAAATGAGCAAAGATAAGAAAAAAAAATTTCATGCTCTTTATGACAAGGAAAACTACAGTAATGCAAAACCAAAGGAATTTTTGAATCTAGAAAATCGGACCAAAAACTTATTTAAACTGAATTTAT</canonical>
            <polymorphic>GTATAGTTAGTATCTTGTCTGAAAACTCATTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTATGCTCATTAAAACAGTTCATCGATGCTGAAAAATTGGAATGGAAAATGGATAATGCATGATTGGAGCTGAAATTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAACCTGAGCAATTGAGAATTCAAGAATTTTATTATTGGGGTAAATATCTATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTGCTGAGCATTCTAGAAATACATTTTTCTAGAAGGGTCTAGCACAAGAATGGTCGGAAAAGGATGAATACTACAGTAATCCAAGAAAAACAGCATAGAAATTTCTAAACCTAAAATCTCAGATCAAATTTKTGGCTTACATTTCGGAAGATATTAAAAACTACCGTACACCAAAACAATAATAATTTCTGAATCTAGAAAACATATTCAAACTGAATTTAGAAGTCAAATTTCAGATTCTCCATAGTCAAAAACTCTCAATTTCCTTTTTTTTTCAAAATTATAAGAAGTTTTCAAAATTTGAAGGTTTGATCTCTCTAGGGATGAGTAATGGGAAGAAACATGGAAAATTTGATCATCTGCAAAAAAGATTCTTTTAATAAATCTGAGCATTTGAGGATTCCAGAAATTCTTTTTTCTGGAAAACAATTGAGCAGGAATCCGAAAAAAAATTGATCGGAGGATTTGAGAATCCTAGAAATCCATTATAGGAGAGATCAGAGGAAAAATGAGCAAAGATAAGAAAAAAAAATTTCATGCTCTTTATGACAAGGAAAACTACAGTAATGCAAAACCAAAGGAATTTTTGAATCTAGAAAATCGGACCAAAAACTTATTTAAACTGAATTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAATCCAAGAAAAACAGCATAG</pcr_primer_p1>
		<pcr_primer_p2>ATCCCTAGAGAGATCAAACCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAATCCAAGAAAAACAGCATAGAAATTTCTAAACCTAAAATCTCAGATCAAATTTTTGGCTTACATTTCGGAAGATATTAAAAACTACCGTACACCAAAACAATAATAATTTCTGAATCTAGAAAACATATTCAAACTGAATTTAGAAGTCAAATTTCAGATTCTCCATAGTCAAAAACTCTCAATTTCCTTTTTTTTTCAAAATTATAAGAAGTTTTCAAAATTTGAAGGTTTGATCTCTCTAGGGAT</canonical_amplicon>
		<polymorphic_amplicon>GTAATCCAAGAAAAACAGCATAGAAATTTCTAAACCTAAAATCTCAGATCAAATTTKTGGCTTACATTTCGGAAGATATTAAAAACTACCGTACACCAAAACAATAATAATTTCTGAATCTAGAAAACATATTCAAACTGAATTTAGAAGTCAAATTTCAGATTCTCCATAGTCAAAAACTCTCAATTTCCTTTTTTTTTCAAAATTATAAGAAGTTTTCAAAATTTGAAGGTTTGATCTCTCTAGGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34310</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>120563</contig_pos>
        <strand>+</strand>
        <context>TTTKTGGCTT[A/T]CATTTCGGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACAGCATAGAAATTTCTAAACCTAAAATCTCAGATCAAATTTTTGGCTT</left_flank>
        <right_flank>CATTTCGGAAGATATTAAAAACTACCGTACACCAAAACAATAATAATTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTATCTTGTCTGAAAACTCATTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTATGCTCATTAAAACAGTTCATCGATGCTGAAAAATTGGAATGGAAAATGGATAATGCATGATTGGAGCTGAAATTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAACCTGAGCAATTGAGAATTCAAGAATTTTATTATTGGGGTAAATATCTATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTGCTGAGCATTCTAGAAATACATTTTTCTAGAAGGGTCTAGCACAAGAATGGTCGGAAAAGGATGAATACTACAGTAATCCAAGAAAAACAGCATAGAAATTTCTAAACCTAAAATCTCAGATCAAATTTTTGGCTTACATTTCGGAAGATATTAAAAACTACCGTACACCAAAACAATAATAATTTCTGAATCTAGAAAACATATTCAAACTGAATTTAGAAGTCAAATTTCAGATTCTCCATAGTCAAAAACTCTCAATTTCCTTTTTTTTTCAAAATTATAAGAAGTTTTCAAAATTTGAAGGTTTGATCTCTCTAGGGATGAGTAATGGGAAGAAACATGGAAAATTTGATCATCTGCAAAAAAGATTCTTTTAATAAATCTGAGCATTTGAGGATTCCAGAAATTCTTTTTTCTGGAAAACAATTGAGCAGGAATCCGAAAAAAAATTGATCGGAGGATTTGAGAATCCTAGAAATCCATTATAGGAGAGATCAGAGGAAAAATGAGCAAAGATAAGAAAAAAAAATTTCATGCTCTTTATGACAAGGAAAACTACAGTAATGCAAAACCAAAGGAATTTTTGAATCTAGAAAATCGGACCAAAAACTTATTTAAACTGAATTTATAGAAAAA</canonical>
            <polymorphic>TAGTATCTTGTCTGAAAACTCATTTTTTTTGGTGTTAAGGATGAGATTTGTATCCCTGTTGTGAACGTGAATATTGGAGAGAAACTCTGGAAATTCGAAAAAGAGAAACTAGGAAAATTTTAAAAGGACTTGACAGATCATGTATGCTCATTAAAACAGTTCATCGATGCTGAAAAATTGGAATGGAAAATGGATAATGCATGATTGGAGCTGAAATTTCAGATTTTGAAGTTTTGATTTCTAGAAGGACGAGTAATTTGAAGAAATCTGGAAAACCTGAGCAATTGAGAATTCAAGAATTTTATTATTGGGGTAAATATCTATTGGAGGAAAAACGGAGATTTTTTTGTAGATCAGAAAATTGCTGAGCATTCTAGAAATACATTTTTCTAGAAGGGTCTAGCACAAGAATGGTCGGAAAAGGATGAATACTACAGTAATCCAAGAAAAACAGCATAGAAATTTCTAAACCTAAAATCTCAGATCAAATTTTTGGCTTWCATTTCGGAAGATATTAAAAACTACCGTACACCAAAACAATAATAATTTCTGAATCTAGAAAACATATTCAAACTGAATTTAGAAGTCAAATTTCAGATTCTCCATAGTCAAAAACTCTCAATTTCCTTTTTTTTTCAAAATTATAAGAAGTTTTCAAAATTTGAAGGTTTGATCTCTCTAGGGATGAGTAATGGGAAGAAACATGGAAAATTTGATCATCTGCAAAAAAGATTCTTTTAATAAATCTGAGCATTTGAGGATTCCAGAAATTCTTTTTTCTGGAAAACAATTGAGCAGGAATCCGAAAAAAAATTGATCGGAGGATTTGAGAATCCTAGAAATCCATTATAGGAGAGATCAGAGGAAAAATGAGCAAAGATAAGAAAAAAAAATTTCATGCTCTTTATGACAAGGAAAACTACAGTAATGCAAAACCAAAGGAATTTTTGAATCTAGAAAATCGGACCAAAAACTTATTTAAACTGAATTTATAGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAATCCAAGAAAAACAGCATAG</pcr_primer_p1>
		<pcr_primer_p2>ATCCCTAGAGAGATCAAACCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAATCCAAGAAAAACAGCATAGAAATTTCTAAACCTAAAATCTCAGATCAAATTTTTGGCTTACATTTCGGAAGATATTAAAAACTACCGTACACCAAAACAATAATAATTTCTGAATCTAGAAAACATATTCAAACTGAATTTAGAAGTCAAATTTCAGATTCTCCATAGTCAAAAACTCTCAATTTCCTTTTTTTTTCAAAATTATAAGAAGTTTTCAAAATTTGAAGGTTTGATCTCTCTAGGGAT</canonical_amplicon>
		<polymorphic_amplicon>GTAATCCAAGAAAAACAGCATAGAAATTTCTAAACCTAAAATCTCAGATCAAATTTTTGGCTTWCATTTCGGAAGATATTAAAAACTACCGTACACCAAAACAATAATAATTTCTGAATCTAGAAAACATATTCAAACTGAATTTAGAAGTCAAATTTCAGATTCTCCATAGTCAAAAACTCTCAATTTCCTTTTTTTTTCAAAATTATAAGAAGTTTTCAAAATTTGAAGGTTTGATCTCTCTAGGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34312</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>133626</contig_pos>
        <strand></strand>
        <context>tatacaaaat[T/A]taattttcag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TAGTTTCTAAGGATTTCAAATACAGTACCGGTCCATAAGATATACAAAAT</left_flank>
        <right_flank>TAATTTTCAGTTGATCTTCGGCCATTTTCAAGAGTCTGGAGCTCAGCTGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAAAATTCAAATGCAACACATCTACACAGATTAACATCTGTCTAATCTTTTTGTTTATCTTGTTATAGTTAGACTTCTGATGAAAAACCAAAGGTTTCATACAAATAGTTTTATCAGACGGATTGGATTAGGCAAACTGGCTTCGACCAATGGAACTGACATTCAGAACCTTTTAGGCGCTGATTGGATTAGTCCAATCCGTCTTGTGATTCTGGAAAAAGAAACAAAAGAGATTAGAGGAAAGGTTTCAGAAGATCATGGAAGTAACAGGGCCGCGGATAGGGTAAGTCTGAGGTGGATAGACTAGCAGCAAAGGAAGTCTCTGGGTTGCTGATATACGAAAGAATGAATAGTTTGGTCCGGTCAACGGTCGGCTGCGGCTCTATTTTTGAAATCTCTGTTAACAGGAAAATTTGGGAAATATAATGACATTTAGAAGGACACAAATAGTTTCTAAGGATTTCAAATACAGTACCGGTCCATAAGATATACAAAATTTAATTTTCAGTTGATCTTCGGCCATTTTCAAGAGTCTGGAGCTCAGCTGTCAAGTCTCCGATCACTTTTAAAATTTGGGATATTGTAAAACATACCTTGATTGAAAACTTCACAGAATTATTTGAAAATTCCTAGTTTTTCAGATATGGGCCTATTTCTGAAAGATCCTGTTTTTGTACTGAACATGTCCAAAAAACCGGTGTCATTCAGAGATCAGGAAATACCTGAAAGTCTGCTTCGATATTAGAAATTCCCAAAAAATCTCAAAATTTCAAATTTTTGAATTTTCCAAAGAAAAAATTGTTGTCAACGATGAATTTTCTGAAATTCGATTTTTGAAAAAAAAATCGTGTTCATTTTTGGGTTACTGTAGGTCTATTATAGGGTTACTGTAGGTTATTGGATCACCGTAGGATAAATGTATGTCGTGACGAGGTTACAGCAGCCTTTTCGATTTCATTTTCCGTTTTTCAGTTTTATGGGTTACGGTATGACTACTG</canonical>
            <polymorphic>CTGAAAATTCAAATGCAACACATCTACACAGATTAACATCTGTCTAATCTTTTTGTTTATCTTGTTATAGTTAGACTTCTGATGAAAAACCAAAGGTTTCATACAAATAGTTTTATCAGACGGATTGGATTAGGCAAACTGGCTTCGACCAATGGAACTGACATTCAGAACCTTTTAGGCGCTGATTGGATTAGTCCAATCCGTCTTGTGATTCTGGAAAAAGAAACAAAAGAGATTAGAGGAAAGGTTTCAGAAGATCATGGAAGTAACAGGGCCGCGGATAGGGTAAGTCTGAGGTGGATAGACTAGCAGCAAAGGAAGTCTCTGGGTTGCTGATATACGAAAGAATGAATAGTTTGGTCCGGTCAACGGTCGGCTGCGGCTCTATTTTTGAAATCTCTGTTAACAGGAAAATTTGGGAAATATAATGACATTTAGAAGGACACAAATAGTTTCTAAGGATTTCAAATACAGTACCGGTCCATAAGATATACAAAATWTAATTTTCAGTTGATCTTCGGCCATTTTCAAGAGTCTGGAGCTCAGCTGTCAAGTCTCCGATCACTTTTAAAATTTGGGATATTGTAAAACATACCTTGATTGAAAACTTCACAGAATTATTTGAAAATTCCTAGTTTTTCAGATATGGGCCTATTTCTGAAAGATCCTGTTTTTGTACTGAACATGTCCAAAAAACCGGTGTCATTCAGAGATCAGGAAATACCTGAAAGTCTGCTTCGATATTAGAAATTCCCAAAAAATCTCAAAATTTCAAATTTTTGAATTTTCCAAAGAAAAAATTGTTGTCAACGATGAATTTTCTGAAATTCGATTTTTGAAAAAAAAATCGTGTTCATTTTTGGGTTACTGTAGGTCTATTATAGGGTTACTGTAGGTTATTGGATCACCGTAGGATAAATGTATGTCGTGACGAGGTTACAGCAGCCTTTTCGATTTCATTTTCCGTTTTTCAGTTTTATGGGTTACGGTATGACTACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>407 175 122 84 75 55 33 19 10 8 7 5</canonical_bands>
                <polymorphic_bands>407 175 159 122 55 33 19 10 8 7 5</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>432 370 97 68 33</canonical_bands>
                <polymorphic_bands>432 370 165 33</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>407 175 122 84 70 44 19 17 16 11 10 8 7 5 5</canonical_bands>
                <polymorphic_bands>407 175 122 89 70 44 19 17 16 11 10 8 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACAAATAGTTTCTAAGGATTTCA</pcr_primer_p1>
		<pcr_primer_p2>TACAGTAACCCAAAAATGAACAC</pcr_primer_p2>
		<pcr_amplicon_size>429</pcr_amplicon_size>
		<canonical_amplicon>CACAAATAGTTTCTAAGGATTTCAAATACAGTACCGGTCCATAAGATATACAAAATTTAATTTTCAGTTGATCTTCGGCCATTTTCAAGAGTCTGGAGCTCAGCTGTCAAGTCTCCGATCACTTTTAAAATTTGGGATATTGTAAAACATACCTTGATTGAAAACTTCACAGAATTATTTGAAAATTCCTAGTTTTTCAGATATGGGCCTATTTCTGAAAGATCCTGTTTTTGTACTGAACATGTCCAAAAAACCGGTGTCATTCAGAGATCAGGAAATACCTGAAAGTCTGCTTCGATATTAGAAATTCCCAAAAAATCTCAAAATTTCAAATTTTTGAATTTTCCAAAGAAAAAATTGTTGTCAACGATGAATTTTCTGAAATTCGATTTTTGAAAAAAAAATCGTGTTCATTTTTGGGTTACTGTA</canonical_amplicon>
		<polymorphic_amplicon>CACAAATAGTTTCTAAGGATTTCAAATACAGTACCGGTCCATAAGATATACAAAATWTAATTTTCAGTTGATCTTCGGCCATTTTCAAGAGTCTGGAGCTCAGCTGTCAAGTCTCCGATCACTTTTAAAATTTGGGATATTGTAAAACATACCTTGATTGAAAACTTCACAGAATTATTTGAAAATTCCTAGTTTTTCAGATATGGGCCTATTTCTGAAAGATCCTGTTTTTGTACTGAACATGTCCAAAAAACCGGTGTCATTCAGAGATCAGGAAATACCTGAAAGTCTGCTTCGATATTAGAAATTCCCAAAAAATCTCAAAATTTCAAATTTTTGAATTTTCCAAAGAAAAAATTGTTGTCAACGATGAATTTTCTGAAATTCGATTTTTGAAAAAAAAATCGTGTTCATTTTTGGGTTACTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34313</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>231924</contig_pos>
        <strand></strand>
        <context>TCCTCGTTGA[G/A]TTGAGTCATG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGTGTTGGGCTCCAGAAACGAGAAAATGTCTTTCAAGATGTCCTCGTTGA</left_flank>
        <right_flank>TTGAGTCATGGTTAGCTGAAAAGAATAGGAGTCTATAAAAAAAAGCTTCA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTAAGGGACACCATAGTCATCATTGATTTCCTGGAGGTGTCTAGGGAGTTTTTGCTCTTCTGCCTCTTGAATCATGCTCCGGAAGGCGTGGGTGGAGCCGTTGATGGAAAAGCTAGAACGGGAGATCTTCAGATGGTCAATGTGGATTGGAAGGGATTTGTGGATTGGTCGAAGGGATAGGCAACGAGCAGCAATTATGTATCTGGAAAATAAGTTTTATGGAATGGGGCTTTTTGGAAAGCGTTAAACCTCTAATAGAAGAGCATCCACACCGTCAAATGTAGGTCAGTTTATCTCAATTCCTGTGGAAGATATCAAAAAGTGGTCAACTGACGAATAACTTCTGATATTATGATAAACAATTTATCAGTTGACAACATTTTGATATCTTTGACAGGTACCGAGATAAATTGGCTCAAAGTTGACTTCTTGTGTCTAGGACATACCTGGTGTTGGGCTCCAGAAACGAGAAAATGTCTTTCAAGATGTCCTCGTTGAGTTGAGTCATGGTTAGCTGAAAAGAATAGGAGTCTATAAAAAAAAGCTTCAATACGAATGAGACGGGTTGGAGAAAATTTTGAAAAACGCTACAAAAAATATATACGACAATATTGATTTGGCATAGGCGCTAGAATAGATTTGTAGCTTTAAATCCAAGAAGTGGATTCAAATTGGAGGAAGTTAGATGAAATTGGAAAAATAGAGAAGATCTGCAATTTCAGAATAATCGGAGCCGGGAGGACATGCCTGAAGATATCCGAATGAAAACTTAAAATAATGTTGGATTTCAGAATGATCTGAACCAGGAGAACTGTGTGAATGGGGGCTGTGTATGCCTCGAATGGTATTGTGATCGTTGAGATTTCCTATGTGCTTCTATTTGTTTGTGTTCCATCCTATAGGTGCTATGGGTCACATTCTTCCTGGAAGGAAGATTCCATTCTCTTCGTTCTTCCCAAGATCTAGGACCCCTGCCCAATTTCTGTCTGTGTGACCTAT</canonical>
            <polymorphic>CGTAAGGGACACCATAGTCATCATTGATTTCCTGGAGGTGTCTAGGGAGTTTTTGCTCTTCTGCCTCTTGAATCATGCTCCGGAAGGCGTGGGTGGAGCCGTTGATGGAAAAGCTAGAACGGGAGATCTTCAGATGGTCAATGTGGATTGGAAGGGATTTGTGGATTGGTCGAAGGGATAGGCAACGAGCAGCAATTATGTATCTGGAAAATAAGTTTTATGGAATGGGGCTTTTTGGAAAGCGTTAAACCTCTAATAGAAGAGCATCCACACCGTCAAATGTAGGTCAGTTTATCTCAATTCCTGTGGAAGATATCAAAAAGTGGTCAACTGACGAATAACTTCTGATATTATGATAAACAATTTATCAGTTGACAACATTTTGATATCTTTGACAGGTACCGAGATAAATTGGCTCAAAGTTGACTTCTTGTGTCTAGGACATACCTGGTGTTGGGCTCCAGAAACGAGAAAATGTCTTTCAAGATGTCCTCGTTGARTTGAGTCATGGTTAGCTGAAAAGAATAGGAGTCTATAAAAAAAAGCTTCAATACGAATGAGACGGGTTGGAGAAAATTTTGAAAAACGCTACAAAAAATATATACGACAATATTGATTTGGCATAGGCGCTAGAATAGATTTGTAGCTTTAAATCCAAGAAGTGGATTCAAATTGGAGGAAGTTAGATGAAATTGGAAAAATAGAGAAGATCTGCAATTTCAGAATAATCGGAGCCGGGAGGACATGCCTGAAGATATCCGAATGAAAACTTAAAATAATGTTGGATTTCAGAATGATCTGAACCAGGAGAACTGTGTGAATGGGGGCTGTGTATGCCTCGAATGGTATTGTGATCGTTGAGATTTCCTATGTGCTTCTATTTGTTTGTGTTCCATCCTATAGGTGCTATGGGTCACATTCTTCCTGGAAGGAAGATTCCATTCTCTTCGTTCTTCCCAAGATCTAGGACCCCTGCCCAATTTCTGTCTGTGTGACCTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTTGTGTCTAGGACATACCT</pcr_primer_p1>
		<pcr_primer_p2>TACAAATCTATTCTAGCGCCTAT</pcr_primer_p2>
		<pcr_amplicon_size>219</pcr_amplicon_size>
		<canonical_amplicon>CTTCTTGTGTCTAGGACATACCTGGTGTTGGGCTCCAGAAACGAGAAAATGTCTTTCAAGATGTCCTCGTTGAGTTGAGTCATGGTTAGCTGAAAAGAATAGGAGTCTATAAAAAAAAGCTTCAATACGAATGAGACGGGTTGGAGAAAATTTTGAAAAACGCTACAAAAAATATATACGACAATATTGATTTGGCATAGGCGCTAGAATAGATTTGTA</canonical_amplicon>
		<polymorphic_amplicon>CTTCTTGTGTCTAGGACATACCTGGTGTTGGGCTCCAGAAACGAGAAAATGTCTTTCAAGATGTCCTCGTTGARTTGAGTCATGGTTAGCTGAAAAGAATAGGAGTCTATAAAAAAAAGCTTCAATACGAATGAGACGGGTTGGAGAAAATTTTGAAAAACGCTACAAAAAATATATACGACAATATTGATTTGGCATAGGCGCTAGAATAGATTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34314</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>232008</contig_pos>
        <strand></strand>
        <context>AAATTTTGAA[A/G]AACGCTACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATAAAAAAAAGCTTCAATACGAATGAGACGGGTTGGAGAAAATTTTGAA</left_flank>
        <right_flank>AACGCTACAAAAAATATATACGACAATATTGATTTGGCATAGGCGCTAGA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGCGTGGGTGGAGCCGTTGATGGAAAAGCTAGAACGGGAGATCTTCAGATGGTCAATGTGGATTGGAAGGGATTTGTGGATTGGTCGAAGGGATAGGCAACGAGCAGCAATTATGTATCTGGAAAATAAGTTTTATGGAATGGGGCTTTTTGGAAAGCGTTAAACCTCTAATAGAAGAGCATCCACACCGTCAAATGTAGGTCAGTTTATCTCAATTCCTGTGGAAGATATCAAAAAGTGGTCAACTGACGAATAACTTCTGATATTATGATAAACAATTTATCAGTTGACAACATTTTGATATCTTTGACAGGTACCGAGATAAATTGGCTCAAAGTTGACTTCTTGTGTCTAGGACATACCTGGTGTTGGGCTCCAGAAACGAGAAAATGTCTTTCAAGATGTCCTCGTTGAGTTGAGTCATGGTTAGCTGAAAAGAATAGGAGTCTATAAAAAAAAGCTTCAATACGAATGAGACGGGTTGGAGAAAATTTTGAAAAACGCTACAAAAAATATATACGACAATATTGATTTGGCATAGGCGCTAGAATAGATTTGTAGCTTTAAATCCAAGAAGTGGATTCAAATTGGAGGAAGTTAGATGAAATTGGAAAAATAGAGAAGATCTGCAATTTCAGAATAATCGGAGCCGGGAGGACATGCCTGAAGATATCCGAATGAAAACTTAAAATAATGTTGGATTTCAGAATGATCTGAACCAGGAGAACTGTGTGAATGGGGGCTGTGTATGCCTCGAATGGTATTGTGATCGTTGAGATTTCCTATGTGCTTCTATTTGTTTGTGTTCCATCCTATAGGTGCTATGGGTCACATTCTTCCTGGAAGGAAGATTCCATTCTCTTCGTTCTTCCCAAGATCTAGGACCCCTGCCCAATTTCTGTCTGTGTGACCTATATTCGATCCAAATATTGGTCGGGATTAGAGGGCTCGAACTTGAACGAACTTGAACGATTAGCACCGATTTGGATAATTGCTCTT</canonical>
            <polymorphic>AGGCGTGGGTGGAGCCGTTGATGGAAAAGCTAGAACGGGAGATCTTCAGATGGTCAATGTGGATTGGAAGGGATTTGTGGATTGGTCGAAGGGATAGGCAACGAGCAGCAATTATGTATCTGGAAAATAAGTTTTATGGAATGGGGCTTTTTGGAAAGCGTTAAACCTCTAATAGAAGAGCATCCACACCGTCAAATGTAGGTCAGTTTATCTCAATTCCTGTGGAAGATATCAAAAAGTGGTCAACTGACGAATAACTTCTGATATTATGATAAACAATTTATCAGTTGACAACATTTTGATATCTTTGACAGGTACCGAGATAAATTGGCTCAAAGTTGACTTCTTGTGTCTAGGACATACCTGGTGTTGGGCTCCAGAAACGAGAAAATGTCTTTCAAGATGTCCTCGTTGAGTTGAGTCATGGTTAGCTGAAAAGAATAGGAGTCTATAAAAAAAAGCTTCAATACGAATGAGACGGGTTGGAGAAAATTTTGAARAACGCTACAAAAAATATATACGACAATATTGATTTGGCATAGGCGCTAGAATAGATTTGTAGCTTTAAATCCAAGAAGTGGATTCAAATTGGAGGAAGTTAGATGAAATTGGAAAAATAGAGAAGATCTGCAATTTCAGAATAATCGGAGCCGGGAGGACATGCCTGAAGATATCCGAATGAAAACTTAAAATAATGTTGGATTTCAGAATGATCTGAACCAGGAGAACTGTGTGAATGGGGGCTGTGTATGCCTCGAATGGTATTGTGATCGTTGAGATTTCCTATGTGCTTCTATTTGTTTGTGTTCCATCCTATAGGTGCTATGGGTCACATTCTTCCTGGAAGGAAGATTCCATTCTCTTCGTTCTTCCCAAGATCTAGGACCCCTGCCCAATTTCTGTCTGTGTGACCTATATTCGATCCAAATATTGGTCGGGATTAGAGGGCTCGAACTTGAACGAACTTGAACGATTAGCACCGATTTGGATAATTGCTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAAATGTCTTTCAAGATGTC</pcr_primer_p1>
		<pcr_primer_p2>AATTGCAGATCTTCTCTATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAGAAAATGTCTTTCAAGATGTCCTCGTTGAGTTGAGTCATGGTTAGCTGAAAAGAATAGGAGTCTATAAAAAAAAGCTTCAATACGAATGAGACGGGTTGGAGAAAATTTTGAAAAACGCTACAAAAAATATATACGACAATATTGATTTGGCATAGGCGCTAGAATAGATTTGTAGCTTTAAATCCAAGAAGTGGATTCAAATTGGAGGAAGTTAGATGAAATTGGAAAAATAGAGAAGATCTGCAATT</canonical_amplicon>
		<polymorphic_amplicon>GAGAAAATGTCTTTCAAGATGTCCTCGTTGAGTTGAGTCATGGTTAGCTGAAAAGAATAGGAGTCTATAAAAAAAAGCTTCAATACGAATGAGACGGGTTGGAGAAAATTTTGAARAACGCTACAAAAAATATATACGACAATATTGATTTGGCATAGGCGCTAGAATAGATTTGTAGCTTTAAATCCAAGAAGTGGATTCAAATTGGAGGAAGTTAGATGAAATTGGAAAAATAGAGAAGATCTGCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34315</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>232042</contig_pos>
        <strand></strand>
        <context>CAATATTGAT[T/C]TGGCATAGGC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGGAGAAAATTTTGAAAAACGCTACAAAAAATATATACGACAATATTGAT</left_flank>
        <right_flank>TGGCATAGGCGCTAGAATAGATTTGTAGCTTTAAATCCAAGAAGTGGATT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGGGAGATCTTCAGATGGTCAATGTGGATTGGAAGGGATTTGTGGATTGGTCGAAGGGATAGGCAACGAGCAGCAATTATGTATCTGGAAAATAAGTTTTATGGAATGGGGCTTTTTGGAAAGCGTTAAACCTCTAATAGAAGAGCATCCACACCGTCAAATGTAGGTCAGTTTATCTCAATTCCTGTGGAAGATATCAAAAAGTGGTCAACTGACGAATAACTTCTGATATTATGATAAACAATTTATCAGTTGACAACATTTTGATATCTTTGACAGGTACCGAGATAAATTGGCTCAAAGTTGACTTCTTGTGTCTAGGACATACCTGGTGTTGGGCTCCAGAAACGAGAAAATGTCTTTCAAGATGTCCTCGTTGAGTTGAGTCATGGTTAGCTGAAAAGAATAGGAGTCTATAAAAAAAAGCTTCAATACGAATGAGACGGGTTGGAGAAAATTTTGAAAAACGCTACAAAAAATATATACGACAATATTGATTTGGCATAGGCGCTAGAATAGATTTGTAGCTTTAAATCCAAGAAGTGGATTCAAATTGGAGGAAGTTAGATGAAATTGGAAAAATAGAGAAGATCTGCAATTTCAGAATAATCGGAGCCGGGAGGACATGCCTGAAGATATCCGAATGAAAACTTAAAATAATGTTGGATTTCAGAATGATCTGAACCAGGAGAACTGTGTGAATGGGGGCTGTGTATGCCTCGAATGGTATTGTGATCGTTGAGATTTCCTATGTGCTTCTATTTGTTTGTGTTCCATCCTATAGGTGCTATGGGTCACATTCTTCCTGGAAGGAAGATTCCATTCTCTTCGTTCTTCCCAAGATCTAGGACCCCTGCCCAATTTCTGTCTGTGTGACCTATATTCGATCCAAATATTGGTCGGGATTAGAGGGCTCGAACTTGAACGAACTTGAACGATTAGCACCGATTTGGATAATTGCTCTTCTCTGCTAACCGTTTCGTATGTTCCAGGAATGAT</canonical>
            <polymorphic>ACGGGAGATCTTCAGATGGTCAATGTGGATTGGAAGGGATTTGTGGATTGGTCGAAGGGATAGGCAACGAGCAGCAATTATGTATCTGGAAAATAAGTTTTATGGAATGGGGCTTTTTGGAAAGCGTTAAACCTCTAATAGAAGAGCATCCACACCGTCAAATGTAGGTCAGTTTATCTCAATTCCTGTGGAAGATATCAAAAAGTGGTCAACTGACGAATAACTTCTGATATTATGATAAACAATTTATCAGTTGACAACATTTTGATATCTTTGACAGGTACCGAGATAAATTGGCTCAAAGTTGACTTCTTGTGTCTAGGACATACCTGGTGTTGGGCTCCAGAAACGAGAAAATGTCTTTCAAGATGTCCTCGTTGAGTTGAGTCATGGTTAGCTGAAAAGAATAGGAGTCTATAAAAAAAAGCTTCAATACGAATGAGACGGGTTGGAGAAAATTTTGAAAAACGCTACAAAAAATATATACGACAATATTGATYTGGCATAGGCGCTAGAATAGATTTGTAGCTTTAAATCCAAGAAGTGGATTCAAATTGGAGGAAGTTAGATGAAATTGGAAAAATAGAGAAGATCTGCAATTTCAGAATAATCGGAGCCGGGAGGACATGCCTGAAGATATCCGAATGAAAACTTAAAATAATGTTGGATTTCAGAATGATCTGAACCAGGAGAACTGTGTGAATGGGGGCTGTGTATGCCTCGAATGGTATTGTGATCGTTGAGATTTCCTATGTGCTTCTATTTGTTTGTGTTCCATCCTATAGGTGCTATGGGTCACATTCTTCCTGGAAGGAAGATTCCATTCTCTTCGTTCTTCCCAAGATCTAGGACCCCTGCCCAATTTCTGTCTGTGTGACCTATATTCGATCCAAATATTGGTCGGGATTAGAGGGCTCGAACTTGAACGAACTTGAACGATTAGCACCGATTTGGATAATTGCTCTTCTCTGCTAACCGTTTCGTATGTTCCAGGAATGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAAATGTCTTTCAAGATGTC</pcr_primer_p1>
		<pcr_primer_p2>AATTGCAGATCTTCTCTATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAGAAAATGTCTTTCAAGATGTCCTCGTTGAGTTGAGTCATGGTTAGCTGAAAAGAATAGGAGTCTATAAAAAAAAGCTTCAATACGAATGAGACGGGTTGGAGAAAATTTTGAAAAACGCTACAAAAAATATATACGACAATATTGATTTGGCATAGGCGCTAGAATAGATTTGTAGCTTTAAATCCAAGAAGTGGATTCAAATTGGAGGAAGTTAGATGAAATTGGAAAAATAGAGAAGATCTGCAATT</canonical_amplicon>
		<polymorphic_amplicon>GAGAAAATGTCTTTCAAGATGTCCTCGTTGAGTTGAGTCATGGTTAGCTGAAAAGAATAGGAGTCTATAAAAAAAAGCTTCAATACGAATGAGACGGGTTGGAGAAAATTTTGAAAAACGCTACAAAAAATATATACGACAATATTGATYTGGCATAGGCGCTAGAATAGATTTGTAGCTTTAAATCCAAGAAGTGGATTCAAATTGGAGGAAGTTAGATGAAATTGGAAAAATAGAGAAGATCTGCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34316</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>232093</contig_pos>
        <strand></strand>
        <context>GAAGTGGATT[C/T]AAATTGGAGR</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGCATAGGCGCTAGAATAGATTTGTAGCTTTAAATCCAAGAAGTGGATT</left_flank>
        <right_flank>AAATTGGAGGAAGTTAGATGAAATTGGAAAAATAGAGAAGATCTGCAATT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAAGGGATAGGCAACGAGCAGCAATTATGTATCTGGAAAATAAGTTTTATGGAATGGGGCTTTTTGGAAAGCGTTAAACCTCTAATAGAAGAGCATCCACACCGTCAAATGTAGGTCAGTTTATCTCAATTCCTGTGGAAGATATCAAAAAGTGGTCAACTGACGAATAACTTCTGATATTATGATAAACAATTTATCAGTTGACAACATTTTGATATCTTTGACAGGTACCGAGATAAATTGGCTCAAAGTTGACTTCTTGTGTCTAGGACATACCTGGTGTTGGGCTCCAGAAACGAGAAAATGTCTTTCAAGATGTCCTCGTTGAGTTGAGTCATGGTTAGCTGAAAAGAATAGGAGTCTATAAAAAAAAGCTTCAATACGAATGAGACGGGTTGGAGAAAATTTTGAAAAACGCTACAAAAAATATATACGACAATATTGATTTGGCATAGGCGCTAGAATAGATTTGTAGCTTTAAATCCAAGAAGTGGATTCAAATTGGAGGAAGTTAGATGAAATTGGAAAAATAGAGAAGATCTGCAATTTCAGAATAATCGGAGCCGGGAGGACATGCCTGAAGATATCCGAATGAAAACTTAAAATAATGTTGGATTTCAGAATGATCTGAACCAGGAGAACTGTGTGAATGGGGGCTGTGTATGCCTCGAATGGTATTGTGATCGTTGAGATTTCCTATGTGCTTCTATTTGTTTGTGTTCCATCCTATAGGTGCTATGGGTCACATTCTTCCTGGAAGGAAGATTCCATTCTCTTCGTTCTTCCCAAGATCTAGGACCCCTGCCCAATTTCTGTCTGTGTGACCTATATTCGATCCAAATATTGGTCGGGATTAGAGGGCTCGAACTTGAACGAACTTGAACGATTAGCACCGATTTGGATAATTGCTCTTCTCTGCTAACCGTTTCGTATGTTCCAGGAATGATTAAAACATAGAGCTTCTATTTTGAAATTGAACATTTTCAAAAACCTCACCA</canonical>
            <polymorphic>TCGAAGGGATAGGCAACGAGCAGCAATTATGTATCTGGAAAATAAGTTTTATGGAATGGGGCTTTTTGGAAAGCGTTAAACCTCTAATAGAAGAGCATCCACACCGTCAAATGTAGGTCAGTTTATCTCAATTCCTGTGGAAGATATCAAAAAGTGGTCAACTGACGAATAACTTCTGATATTATGATAAACAATTTATCAGTTGACAACATTTTGATATCTTTGACAGGTACCGAGATAAATTGGCTCAAAGTTGACTTCTTGTGTCTAGGACATACCTGGTGTTGGGCTCCAGAAACGAGAAAATGTCTTTCAAGATGTCCTCGTTGAGTTGAGTCATGGTTAGCTGAAAAGAATAGGAGTCTATAAAAAAAAGCTTCAATACGAATGAGACGGGTTGGAGAAAATTTTGAAAAACGCTACAAAAAATATATACGACAATATTGATTTGGCATAGGCGCTAGAATAGATTTGTAGCTTTAAATCCAAGAAGTGGATTYAAATTGGAGGAAGTTAGATGAAATTGGAAAAATAGAGAAGATCTGCAATTTCAGAATAATCGGAGCCGGGAGGACATGCCTGAAGATATCCGAATGAAAACTTAAAATAATGTTGGATTTCAGAATGATCTGAACCAGGAGAACTGTGTGAATGGGGGCTGTGTATGCCTCGAATGGTATTGTGATCGTTGAGATTTCCTATGTGCTTCTATTTGTTTGTGTTCCATCCTATAGGTGCTATGGGTCACATTCTTCCTGGAAGGAAGATTCCATTCTCTTCGTTCTTCCCAAGATCTAGGACCCCTGCCCAATTTCTGTCTGTGTGACCTATATTCGATCCAAATATTGGTCGGGATTAGAGGGCTCGAACTTGAACGAACTTGAACGATTAGCACCGATTTGGATAATTGCTCTTCTCTGCTAACCGTTTCGTATGTTCCAGGAATGATTAAAACATAGAGCTTCTATTTTGAAATTGAACATTTTCAAAAACCTCACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>334 270 234 136 26</canonical_bands>
                <polymorphic_bands>406 334 234 26</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>496 270 234</canonical_bands>
                <polymorphic_bands>766 234</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGCTTCAATACGAATGAG</pcr_primer_p1>
		<pcr_primer_p2>TAAGTTTTCATTCGGATATCTTC</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGCTTCAATACGAATGAGACGGGTTGGAGAAAATTTTGAAAAACGCTACAAAAAATATATACGACAATATTGATTTGGCATAGGCGCTAGAATAGATTTGTAGCTTTAAATCCAAGAAGTGGATTCAAATTGGAGGAAGTTAGATGAAATTGGAAAAATAGAGAAGATCTGCAATTTCAGAATAATCGGAGCCGGGAGGACATGCCTGAAGATATCCGAATGAAAACTTA</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGCTTCAATACGAATGAGACGGGTTGGAGAAAATTTTGAAAAACGCTACAAAAAATATATACGACAATATTGATTTGGCATAGGCGCTAGAATAGATTTGTAGCTTTAAATCCAAGAAGTGGATTYAAATTGGAGGAAGTTAGATGAAATTGGAAAAATAGAGAAGATCTGCAATTTCAGAATAATCGGAGCCGGGAGGACATGCCTGAAGATATCCGAATGAAAACTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34317</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>232103</contig_pos>
        <strand></strand>
        <context>YAAATTGGAG[G/A]AAGTTAGATG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GCTAGAATAGATTTGTAGCTTTAAATCCAAGAAGTGGATTCAAATTGGAG</left_flank>
        <right_flank>AAGTTAGATGAAATTGGAAAAATAGAGAAGATCTGCAATTTCAGAATAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGCAACGAGCAGCAATTATGTATCTGGAAAATAAGTTTTATGGAATGGGGCTTTTTGGAAAGCGTTAAACCTCTAATAGAAGAGCATCCACACCGTCAAATGTAGGTCAGTTTATCTCAATTCCTGTGGAAGATATCAAAAAGTGGTCAACTGACGAATAACTTCTGATATTATGATAAACAATTTATCAGTTGACAACATTTTGATATCTTTGACAGGTACCGAGATAAATTGGCTCAAAGTTGACTTCTTGTGTCTAGGACATACCTGGTGTTGGGCTCCAGAAACGAGAAAATGTCTTTCAAGATGTCCTCGTTGAGTTGAGTCATGGTTAGCTGAAAAGAATAGGAGTCTATAAAAAAAAGCTTCAATACGAATGAGACGGGTTGGAGAAAATTTTGAAAAACGCTACAAAAAATATATACGACAATATTGATTTGGCATAGGCGCTAGAATAGATTTGTAGCTTTAAATCCAAGAAGTGGATTCAAATTGGAGGAAGTTAGATGAAATTGGAAAAATAGAGAAGATCTGCAATTTCAGAATAATCGGAGCCGGGAGGACATGCCTGAAGATATCCGAATGAAAACTTAAAATAATGTTGGATTTCAGAATGATCTGAACCAGGAGAACTGTGTGAATGGGGGCTGTGTATGCCTCGAATGGTATTGTGATCGTTGAGATTTCCTATGTGCTTCTATTTGTTTGTGTTCCATCCTATAGGTGCTATGGGTCACATTCTTCCTGGAAGGAAGATTCCATTCTCTTCGTTCTTCCCAAGATCTAGGACCCCTGCCCAATTTCTGTCTGTGTGACCTATATTCGATCCAAATATTGGTCGGGATTAGAGGGCTCGAACTTGAACGAACTTGAACGATTAGCACCGATTTGGATAATTGCTCTTCTCTGCTAACCGTTTCGTATGTTCCAGGAATGATTAAAACATAGAGCTTCTATTTTGAAATTGAACATTTTCAAAAACCTCACCAGATGAGGCAA</canonical>
            <polymorphic>AGGCAACGAGCAGCAATTATGTATCTGGAAAATAAGTTTTATGGAATGGGGCTTTTTGGAAAGCGTTAAACCTCTAATAGAAGAGCATCCACACCGTCAAATGTAGGTCAGTTTATCTCAATTCCTGTGGAAGATATCAAAAAGTGGTCAACTGACGAATAACTTCTGATATTATGATAAACAATTTATCAGTTGACAACATTTTGATATCTTTGACAGGTACCGAGATAAATTGGCTCAAAGTTGACTTCTTGTGTCTAGGACATACCTGGTGTTGGGCTCCAGAAACGAGAAAATGTCTTTCAAGATGTCCTCGTTGAGTTGAGTCATGGTTAGCTGAAAAGAATAGGAGTCTATAAAAAAAAGCTTCAATACGAATGAGACGGGTTGGAGAAAATTTTGAAAAACGCTACAAAAAATATATACGACAATATTGATTTGGCATAGGCGCTAGAATAGATTTGTAGCTTTAAATCCAAGAAGTGGATTCAAATTGGAGRAAGTTAGATGAAATTGGAAAAATAGAGAAGATCTGCAATTTCAGAATAATCGGAGCCGGGAGGACATGCCTGAAGATATCCGAATGAAAACTTAAAATAATGTTGGATTTCAGAATGATCTGAACCAGGAGAACTGTGTGAATGGGGGCTGTGTATGCCTCGAATGGTATTGTGATCGTTGAGATTTCCTATGTGCTTCTATTTGTTTGTGTTCCATCCTATAGGTGCTATGGGTCACATTCTTCCTGGAAGGAAGATTCCATTCTCTTCGTTCTTCCCAAGATCTAGGACCCCTGCCCAATTTCTGTCTGTGTGACCTATATTCGATCCAAATATTGGTCGGGATTAGAGGGCTCGAACTTGAACGAACTTGAACGATTAGCACCGATTTGGATAATTGCTCTTCTCTGCTAACCGTTTCGTATGTTCCAGGAATGATTAAAACATAGAGCTTCTATTTTGAAATTGAACATTTTCAAAAACCTCACCAGATGAGGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGGCGCTAGAATAGATTTGTA</pcr_primer_p1>
		<pcr_primer_p2>AAATCTCAACGATCACAATACC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATAGGCGCTAGAATAGATTTGTAGCTTTAAATCCAAGAAGTGGATTCAAATTGGAGGAAGTTAGATGAAATTGGAAAAATAGAGAAGATCTGCAATTTCAGAATAATCGGAGCCGGGAGGACATGCCTGAAGATATCCGAATGAAAACTTAAAATAATGTTGGATTTCAGAATGATCTGAACCAGGAGAACTGTGTGAATGGGGGCTGTGTATGCCTCGAATGGTATTGTGATCGTTGAGATTT</canonical_amplicon>
		<polymorphic_amplicon>ATAGGCGCTAGAATAGATTTGTAGCTTTAAATCCAAGAAGTGGATTCAAATTGGAGRAAGTTAGATGAAATTGGAAAAATAGAGAAGATCTGCAATTTCAGAATAATCGGAGCCGGGAGGACATGCCTGAAGATATCCGAATGAAAACTTAAAATAATGTTGGATTTCAGAATGATCTGAACCAGGAGAACTGTGTGAATGGGGGCTGTGTATGCCTCGAATGGTATTGTGATCGTTGAGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34318</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>232207</contig_pos>
        <strand></strand>
        <context>AAAATAATGT[T/G]GGATTTCAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AGCCGGGAGGACATGCCTGAAGATATCCGAATGAAAACTTAAAATAATGT</left_flank>
        <right_flank>GGATTTCAGAATGATCTGAACCAGGAGAACTGTGTGAATGGGGGCTGTGT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTCAGTTTATCTCAATTCCTGTGGAAGATATCAAAAAGTGGTCAACTGACGAATAACTTCTGATATTATGATAAACAATTTATCAGTTGACAACATTTTGATATCTTTGACAGGTACCGAGATAAATTGGCTCAAAGTTGACTTCTTGTGTCTAGGACATACCTGGTGTTGGGCTCCAGAAACGAGAAAATGTCTTTCAAGATGTCCTCGTTGAGTTGAGTCATGGTTAGCTGAAAAGAATAGGAGTCTATAAAAAAAAGCTTCAATACGAATGAGACGGGTTGGAGAAAATTTTGAAAAACGCTACAAAAAATATATACGACAATATTGATTTGGCATAGGCGCTAGAATAGATTTGTAGCTTTAAATCCAAGAAGTGGATTCAAATTGGAGGAAGTTAGATGAAATTGGAAAAATAGAGAAGATCTGCAATTTCAGAATAATCGGAGCCGGGAGGACATGCCTGAAGATATCCGAATGAAAACTTAAAATAATGTTGGATTTCAGAATGATCTGAACCAGGAGAACTGTGTGAATGGGGGCTGTGTATGCCTCGAATGGTATTGTGATCGTTGAGATTTCCTATGTGCTTCTATTTGTTTGTGTTCCATCCTATAGGTGCTATGGGTCACATTCTTCCTGGAAGGAAGATTCCATTCTCTTCGTTCTTCCCAAGATCTAGGACCCCTGCCCAATTTCTGTCTGTGTGACCTATATTCGATCCAAATATTGGTCGGGATTAGAGGGCTCGAACTTGAACGAACTTGAACGATTAGCACCGATTTGGATAATTGCTCTTCTCTGCTAACCGTTTCGTATGTTCCAGGAATGATTAAAACATAGAGCTTCTATTTTGAAATTGAACATTTTCAAAAACCTCACCAGATGAGGCAAAGGAAAATTTAGAATAGATTTATAATATTGTGAATTTGTTAAGAAATGTATTTCATAGGAATTTCAAACTGTACGAATTGAGCAGATATGCAGAAAAAGACAAA</canonical>
            <polymorphic>AGGTCAGTTTATCTCAATTCCTGTGGAAGATATCAAAAAGTGGTCAACTGACGAATAACTTCTGATATTATGATAAACAATTTATCAGTTGACAACATTTTGATATCTTTGACAGGTACCGAGATAAATTGGCTCAAAGTTGACTTCTTGTGTCTAGGACATACCTGGTGTTGGGCTCCAGAAACGAGAAAATGTCTTTCAAGATGTCCTCGTTGAGTTGAGTCATGGTTAGCTGAAAAGAATAGGAGTCTATAAAAAAAAGCTTCAATACGAATGAGACGGGTTGGAGAAAATTTTGAAAAACGCTACAAAAAATATATACGACAATATTGATTTGGCATAGGCGCTAGAATAGATTTGTAGCTTTAAATCCAAGAAGTGGATTCAAATTGGAGGAAGTTAGATGAAATTGGAAAAATAGAGAAGATCTGCAATTTCAGAATAATCGGAGCCGGGAGGACATGCCTGAAGATATCCGAATGAAAACTTAAAATAATGTKGGATTTCAGAATGATCTGAACCAGGAGAACTGTGTGAATGGGGGCTGTGTATGCCTCGAATGGTATTGTGATCGTTGAGATTTCCTATGTGCTTCTATTTGTTTGTGTTCCATCCTATAGGTGCTATGGGTCACATTCTTCCTGGAAGGAAGATTCCATTCTCTTCGTTCTTCCCAAGATCTAGGACCCCTGCCCAATTTCTGTCTGTGTGACCTATATTCGATCCAAATATTGGTCGGGATTAGAGGGCTCGAACTTGAACGAACTTGAACGATTAGCACCGATTTGGATAATTGCTCTTCTCTGCTAACCGTTTCGTATGTTCCAGGAATGATTAAAACATAGAGCTTCTATTTTGAAATTGAACATTTTCAAAAACCTCACCAGATGAGGCAAAGGAAAATTTAGAATAGATTTATAATATTGTGAATTTGTTAAGAAATGTATTTCATAGGAATTTCAAACTGTACGAATTGAGCAGATATGCAGAAAAAGACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGGCGCTAGAATAGATTTGTA</pcr_primer_p1>
		<pcr_primer_p2>AAATCTCAACGATCACAATACC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATAGGCGCTAGAATAGATTTGTAGCTTTAAATCCAAGAAGTGGATTCAAATTGGAGGAAGTTAGATGAAATTGGAAAAATAGAGAAGATCTGCAATTTCAGAATAATCGGAGCCGGGAGGACATGCCTGAAGATATCCGAATGAAAACTTAAAATAATGTTGGATTTCAGAATGATCTGAACCAGGAGAACTGTGTGAATGGGGGCTGTGTATGCCTCGAATGGTATTGTGATCGTTGAGATTT</canonical_amplicon>
		<polymorphic_amplicon>ATAGGCGCTAGAATAGATTTGTAGCTTTAAATCCAAGAAGTGGATTCAAATTGGAGGAAGTTAGATGAAATTGGAAAAATAGAGAAGATCTGCAATTTCAGAATAATCGGAGCCGGGAGGACATGCCTGAAGATATCCGAATGAAAACTTAAAATAATGTKGGATTTCAGAATGATCTGAACCAGGAGAACTGTGTGAATGGGGGCTGTGTATGCCTCGAATGGTATTGTGATCGTTGAGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34319</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>232295</contig_pos>
        <strand></strand>
        <context>AGATTTCCTA[T/C]GTGCTTCTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATGGGGGCTGTGTATGCCTCGAATGGTATTGTGATCGTTGAGATTTCCTA</left_flank>
        <right_flank>GTGCTTCTATTTGTTTGTGTTCCATCCTATAGGTGCTATGGGTCACATTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGACAACATTTTGATATCTTTGACAGGTACCGAGATAAATTGGCTCAAAGTTGACTTCTTGTGTCTAGGACATACCTGGTGTTGGGCTCCAGAAACGAGAAAATGTCTTTCAAGATGTCCTCGTTGAGTTGAGTCATGGTTAGCTGAAAAGAATAGGAGTCTATAAAAAAAAGCTTCAATACGAATGAGACGGGTTGGAGAAAATTTTGAAAAACGCTACAAAAAATATATACGACAATATTGATTTGGCATAGGCGCTAGAATAGATTTGTAGCTTTAAATCCAAGAAGTGGATTCAAATTGGAGGAAGTTAGATGAAATTGGAAAAATAGAGAAGATCTGCAATTTCAGAATAATCGGAGCCGGGAGGACATGCCTGAAGATATCCGAATGAAAACTTAAAATAATGTTGGATTTCAGAATGATCTGAACCAGGAGAACTGTGTGAATGGGGGCTGTGTATGCCTCGAATGGTATTGTGATCGTTGAGATTTCCTATGTGCTTCTATTTGTTTGTGTTCCATCCTATAGGTGCTATGGGTCACATTCTTCCTGGAAGGAAGATTCCATTCTCTTCGTTCTTCCCAAGATCTAGGACCCCTGCCCAATTTCTGTCTGTGTGACCTATATTCGATCCAAATATTGGTCGGGATTAGAGGGCTCGAACTTGAACGAACTTGAACGATTAGCACCGATTTGGATAATTGCTCTTCTCTGCTAACCGTTTCGTATGTTCCAGGAATGATTAAAACATAGAGCTTCTATTTTGAAATTGAACATTTTCAAAAACCTCACCAGATGAGGCAAAGGAAAATTTAGAATAGATTTATAATATTGTGAATTTGTTAAGAAATGTATTTCATAGGAATTTCAAACTGTACGAATTGAGCAGATATGCAGAAAAAGACAAAGAATATCCAATCTGGCAAAATGTTGTTTTATTGGTGTCCATTAGTCAGAAGAAGGAGAAGAAAAGAGAATAGAGACCCAAGAGGACGA</canonical>
            <polymorphic>TTGACAACATTTTGATATCTTTGACAGGTACCGAGATAAATTGGCTCAAAGTTGACTTCTTGTGTCTAGGACATACCTGGTGTTGGGCTCCAGAAACGAGAAAATGTCTTTCAAGATGTCCTCGTTGAGTTGAGTCATGGTTAGCTGAAAAGAATAGGAGTCTATAAAAAAAAGCTTCAATACGAATGAGACGGGTTGGAGAAAATTTTGAAAAACGCTACAAAAAATATATACGACAATATTGATTTGGCATAGGCGCTAGAATAGATTTGTAGCTTTAAATCCAAGAAGTGGATTCAAATTGGAGGAAGTTAGATGAAATTGGAAAAATAGAGAAGATCTGCAATTTCAGAATAATCGGAGCCGGGAGGACATGCCTGAAGATATCCGAATGAAAACTTAAAATAATGTTGGATTTCAGAATGATCTGAACCAGGAGAACTGTGTGAATGGGGGCTGTGTATGCCTCGAATGGTATTGTGATCGTTGAGATTTCCTAYGTGCTTCTATTTGTTTGTGTTCCATCCTATAGGTGCTATGGGTCACATTCTTCCTGGAAGGAAGATTCCATTCTCTTCGTTCTTCCCAAGATCTAGGACCCCTGCCCAATTTCTGTCTGTGTGACCTATATTCGATCCAAATATTGGTCGGGATTAGAGGGCTCGAACTTGAACGAACTTGAACGATTAGCACCGATTTGGATAATTGCTCTTCTCTGCTAACCGTTTCGTATGTTCCAGGAATGATTAAAACATAGAGCTTCTATTTTGAAATTGAACATTTTCAAAAACCTCACCAGATGAGGCAAAGGAAAATTTAGAATAGATTTATAATATTGTGAATTTGTTAAGAAATGTATTTCATAGGAATTTCAAACTGTACGAATTGAGCAGATATGCAGAAAAAGACAAAGAATATCCAATCTGGCAAAATGTTGTTTTATTGGTGTCCATTAGTCAGAAGAAGGAGAAGAAAAGAGAATAGAGACCCAAGAGGACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGAATGAAAACTTAAAATAATG</pcr_primer_p1>
		<pcr_primer_p2>GATCGAATATAGGTCACACAGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCGAATGAAAACTTAAAATAATGTTGGATTTCAGAATGATCTGAACCAGGAGAACTGTGTGAATGGGGGCTGTGTATGCCTCGAATGGTATTGTGATCGTTGAGATTTCCTATGTGCTTCTATTTGTTTGTGTTCCATCCTATAGGTGCTATGGGTCACATTCTTCCTGGAAGGAAGATTCCATTCTCTTCGTTCTTCCCAAGATCTAGGACCCCTGCCCAATTTCTGTCTGTGTGACCTATATTCGATC</canonical_amplicon>
		<polymorphic_amplicon>CCGAATGAAAACTTAAAATAATGTTGGATTTCAGAATGATCTGAACCAGGAGAACTGTGTGAATGGGGGCTGTGTATGCCTCGAATGGTATTGTGATCGTTGAGATTTCCTAYGTGCTTCTATTTGTTTGTGTTCCATCCTATAGGTGCTATGGGTCACATTCTTCCTGGAAGGAAGATTCCATTCTCTTCGTTCTTCCCAAGATCTAGGACCCCTGCCCAATTTCTGTCTGTGTGACCTATATTCGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34320</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>232350</contig_pos>
        <strand></strand>
        <context>ACATTCTTCC[T/C]RGAAGGAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCTATTTGTTTGTGTTCCATCCTATAGGTGCTATGGGTCACATTCTTCC</left_flank>
        <right_flank>GGAAGGAAGATTCCATTCTCTTCGTTCTTCCCAAGATCTAGGACCCCTGC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCTTGTGTCTAGGACATACCTGGTGTTGGGCTCCAGAAACGAGAAAATGTCTTTCAAGATGTCCTCGTTGAGTTGAGTCATGGTTAGCTGAAAAGAATAGGAGTCTATAAAAAAAAGCTTCAATACGAATGAGACGGGTTGGAGAAAATTTTGAAAAACGCTACAAAAAATATATACGACAATATTGATTTGGCATAGGCGCTAGAATAGATTTGTAGCTTTAAATCCAAGAAGTGGATTCAAATTGGAGGAAGTTAGATGAAATTGGAAAAATAGAGAAGATCTGCAATTTCAGAATAATCGGAGCCGGGAGGACATGCCTGAAGATATCCGAATGAAAACTTAAAATAATGTTGGATTTCAGAATGATCTGAACCAGGAGAACTGTGTGAATGGGGGCTGTGTATGCCTCGAATGGTATTGTGATCGTTGAGATTTCCTATGTGCTTCTATTTGTTTGTGTTCCATCCTATAGGTGCTATGGGTCACATTCTTCCTGGAAGGAAGATTCCATTCTCTTCGTTCTTCCCAAGATCTAGGACCCCTGCCCAATTTCTGTCTGTGTGACCTATATTCGATCCAAATATTGGTCGGGATTAGAGGGCTCGAACTTGAACGAACTTGAACGATTAGCACCGATTTGGATAATTGCTCTTCTCTGCTAACCGTTTCGTATGTTCCAGGAATGATTAAAACATAGAGCTTCTATTTTGAAATTGAACATTTTCAAAAACCTCACCAGATGAGGCAAAGGAAAATTTAGAATAGATTTATAATATTGTGAATTTGTTAAGAAATGTATTTCATAGGAATTTCAAACTGTACGAATTGAGCAGATATGCAGAAAAAGACAAAGAATATCCAATCTGGCAAAATGTTGTTTTATTGGTGTCCATTAGTCAGAAGAAGGAGAAGAAAAGAGAATAGAGACCCAAGAGGACGAATCTAGCAACCAAAAGACACAAGAACTACAATTCTCAATAACAACATGACCAACT</canonical>
            <polymorphic>CTTCTTGTGTCTAGGACATACCTGGTGTTGGGCTCCAGAAACGAGAAAATGTCTTTCAAGATGTCCTCGTTGAGTTGAGTCATGGTTAGCTGAAAAGAATAGGAGTCTATAAAAAAAAGCTTCAATACGAATGAGACGGGTTGGAGAAAATTTTGAAAAACGCTACAAAAAATATATACGACAATATTGATTTGGCATAGGCGCTAGAATAGATTTGTAGCTTTAAATCCAAGAAGTGGATTCAAATTGGAGGAAGTTAGATGAAATTGGAAAAATAGAGAAGATCTGCAATTTCAGAATAATCGGAGCCGGGAGGACATGCCTGAAGATATCCGAATGAAAACTTAAAATAATGTTGGATTTCAGAATGATCTGAACCAGGAGAACTGTGTGAATGGGGGCTGTGTATGCCTCGAATGGTATTGTGATCGTTGAGATTTCCTATGTGCTTCTATTTGTTTGTGTTCCATCCTATAGGTGCTATGGGTCACATTCTTCCYGGAAGGAAGATTCCATTCTCTTCGTTCTTCCCAAGATCTAGGACCCCTGCCCAATTTCTGTCTGTGTGACCTATATTCGATCCAAATATTGGTCGGGATTAGAGGGCTCGAACTTGAACGAACTTGAACGATTAGCACCGATTTGGATAATTGCTCTTCTCTGCTAACCGTTTCGTATGTTCCAGGAATGATTAAAACATAGAGCTTCTATTTTGAAATTGAACATTTTCAAAAACCTCACCAGATGAGGCAAAGGAAAATTTAGAATAGATTTATAATATTGTGAATTTGTTAAGAAATGTATTTCATAGGAATTTCAAACTGTACGAATTGAGCAGATATGCAGAAAAAGACAAAGAATATCCAATCTGGCAAAATGTTGTTTTATTGGTGTCCATTAGTCAGAAGAAGGAGAAGAAAAGAGAATAGAGACCCAAGAGGACGAATCTAGCAACCAAAAGACACAAGAACTACAATTCTCAATAACAACATGACCAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>357 317 184 120 22</canonical_bands>
                <polymorphic_bands>357 317 304 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGAATGAAAACTTAAAATAATG</pcr_primer_p1>
		<pcr_primer_p2>GATCGAATATAGGTCACACAGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCGAATGAAAACTTAAAATAATGTTGGATTTCAGAATGATCTGAACCAGGAGAACTGTGTGAATGGGGGCTGTGTATGCCTCGAATGGTATTGTGATCGTTGAGATTTCCTATGTGCTTCTATTTGTTTGTGTTCCATCCTATAGGTGCTATGGGTCACATTCTTCCTGGAAGGAAGATTCCATTCTCTTCGTTCTTCCCAAGATCTAGGACCCCTGCCCAATTTCTGTCTGTGTGACCTATATTCGATC</canonical_amplicon>
		<polymorphic_amplicon>CCGAATGAAAACTTAAAATAATGTTGGATTTCAGAATGATCTGAACCAGGAGAACTGTGTGAATGGGGGCTGTGTATGCCTCGAATGGTATTGTGATCGTTGAGATTTCCTATGTGCTTCTATTTGTTTGTGTTCCATCCTATAGGTGCTATGGGTCACATTCTTCCYGGAAGGAAGATTCCATTCTCTTCGTTCTTCCCAAGATCTAGGACCCCTGCCCAATTTCTGTCTGTGTGACCTATATTCGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34321</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>232351</contig_pos>
        <strand></strand>
        <context>CATTCTTCCY[G/A]GAAGGAAGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCTATTTGTTTGTGTTCCATCCTATAGGTGCTATGGGTCACATTCTTCCT</left_flank>
        <right_flank>GAAGGAAGATTCCATTCTCTTCGTTCTTCCCAAGATCTAGGACCCCTGCC</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTGTGTCTAGGACATACCTGGTGTTGGGCTCCAGAAACGAGAAAATGTCTTTCAAGATGTCCTCGTTGAGTTGAGTCATGGTTAGCTGAAAAGAATAGGAGTCTATAAAAAAAAGCTTCAATACGAATGAGACGGGTTGGAGAAAATTTTGAAAAACGCTACAAAAAATATATACGACAATATTGATTTGGCATAGGCGCTAGAATAGATTTGTAGCTTTAAATCCAAGAAGTGGATTCAAATTGGAGGAAGTTAGATGAAATTGGAAAAATAGAGAAGATCTGCAATTTCAGAATAATCGGAGCCGGGAGGACATGCCTGAAGATATCCGAATGAAAACTTAAAATAATGTTGGATTTCAGAATGATCTGAACCAGGAGAACTGTGTGAATGGGGGCTGTGTATGCCTCGAATGGTATTGTGATCGTTGAGATTTCCTATGTGCTTCTATTTGTTTGTGTTCCATCCTATAGGTGCTATGGGTCACATTCTTCCTGGAAGGAAGATTCCATTCTCTTCGTTCTTCCCAAGATCTAGGACCCCTGCCCAATTTCTGTCTGTGTGACCTATATTCGATCCAAATATTGGTCGGGATTAGAGGGCTCGAACTTGAACGAACTTGAACGATTAGCACCGATTTGGATAATTGCTCTTCTCTGCTAACCGTTTCGTATGTTCCAGGAATGATTAAAACATAGAGCTTCTATTTTGAAATTGAACATTTTCAAAAACCTCACCAGATGAGGCAAAGGAAAATTTAGAATAGATTTATAATATTGTGAATTTGTTAAGAAATGTATTTCATAGGAATTTCAAACTGTACGAATTGAGCAGATATGCAGAAAAAGACAAAGAATATCCAATCTGGCAAAATGTTGTTTTATTGGTGTCCATTAGTCAGAAGAAGGAGAAGAAAAGAGAATAGAGACCCAAGAGGACGAATCTAGCAACCAAAAGACACAAGAACTACAATTCTCAATAACAACATGACCAACTG</canonical>
            <polymorphic>TTCTTGTGTCTAGGACATACCTGGTGTTGGGCTCCAGAAACGAGAAAATGTCTTTCAAGATGTCCTCGTTGAGTTGAGTCATGGTTAGCTGAAAAGAATAGGAGTCTATAAAAAAAAGCTTCAATACGAATGAGACGGGTTGGAGAAAATTTTGAAAAACGCTACAAAAAATATATACGACAATATTGATTTGGCATAGGCGCTAGAATAGATTTGTAGCTTTAAATCCAAGAAGTGGATTCAAATTGGAGGAAGTTAGATGAAATTGGAAAAATAGAGAAGATCTGCAATTTCAGAATAATCGGAGCCGGGAGGACATGCCTGAAGATATCCGAATGAAAACTTAAAATAATGTTGGATTTCAGAATGATCTGAACCAGGAGAACTGTGTGAATGGGGGCTGTGTATGCCTCGAATGGTATTGTGATCGTTGAGATTTCCTATGTGCTTCTATTTGTTTGTGTTCCATCCTATAGGTGCTATGGGTCACATTCTTCCTRGAAGGAAGATTCCATTCTCTTCGTTCTTCCCAAGATCTAGGACCCCTGCCCAATTTCTGTCTGTGTGACCTATATTCGATCCAAATATTGGTCGGGATTAGAGGGCTCGAACTTGAACGAACTTGAACGATTAGCACCGATTTGGATAATTGCTCTTCTCTGCTAACCGTTTCGTATGTTCCAGGAATGATTAAAACATAGAGCTTCTATTTTGAAATTGAACATTTTCAAAAACCTCACCAGATGAGGCAAAGGAAAATTTAGAATAGATTTATAATATTGTGAATTTGTTAAGAAATGTATTTCATAGGAATTTCAAACTGTACGAATTGAGCAGATATGCAGAAAAAGACAAAGAATATCCAATCTGGCAAAATGTTGTTTTATTGGTGTCCATTAGTCAGAAGAAGGAGAAGAAAAGAGAATAGAGACCCAAGAGGACGAATCTAGCAACCAAAAGACACAAGAACTACAATTCTCAATAACAACATGACCAACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>318 288 184 120 69 21</canonical_bands>
                <polymorphic_bands>318 304 288 69 21</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>357 318 184 120 21</canonical_bands>
                <polymorphic_bands>357 318 304 21</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>496 320 184</canonical_bands>
                <polymorphic_bands>680 320</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGAATGAAAACTTAAAATAATG</pcr_primer_p1>
		<pcr_primer_p2>GATCGAATATAGGTCACACAGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCGAATGAAAACTTAAAATAATGTTGGATTTCAGAATGATCTGAACCAGGAGAACTGTGTGAATGGGGGCTGTGTATGCCTCGAATGGTATTGTGATCGTTGAGATTTCCTATGTGCTTCTATTTGTTTGTGTTCCATCCTATAGGTGCTATGGGTCACATTCTTCCTGGAAGGAAGATTCCATTCTCTTCGTTCTTCCCAAGATCTAGGACCCCTGCCCAATTTCTGTCTGTGTGACCTATATTCGATC</canonical_amplicon>
		<polymorphic_amplicon>CCGAATGAAAACTTAAAATAATGTTGGATTTCAGAATGATCTGAACCAGGAGAACTGTGTGAATGGGGGCTGTGTATGCCTCGAATGGTATTGTGATCGTTGAGATTTCCTATGTGCTTCTATTTGTTTGTGTTCCATCCTATAGGTGCTATGGGTCACATTCTTCCTRGAAGGAAGATTCCATTCTCTTCGTTCTTCCCAAGATCTAGGACCCCTGCCCAATTTCTGTCTGTGTGACCTATATTCGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34322</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>252889</contig_pos>
        <strand>+</strand>
        <context>TCTCTGTAAG[A/G]ATTGTTAGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAAAGCTTGGCGGAGACCCTCAGAAGAAGCCACAAAAAATCTCTGTAAG</left_flank>
        <right_flank>ATTGTTAGAGCTCAATCAGATGTGGATACGATAAATCTGGCACCTGGAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCTCAAATCTTTAAAAAAAATTCAACTTTCCAGGTCCCCCAACTTACCTGTTGCTCTGAAGTCGCCGATCTTCAATTCAGCACCTCCAACAGAAAATGCCAAGCCGACCAAGATTGCCGAATCAAAGCTATGGAGCCATATATGGTGGAAAAGAAGATTCAAGGATCTATCGAAATCAATTACTGCGTTGAATGCTTCTCAAAAGCCACTGATCTTGATAAGAAGAAATGGAAGAGGATGATTAATGTGAATGAGAAGATTGAGAAGGTTCTCAGCTGCCAGGAATGTGGAATGCTCTGGCATGAGCAATGCTCCTTCTACTATGATGATCCAGAAGAGTTTATCTGTAGATCTTGTGATTCGGATGCTTATCAGACTGTGCTAACTGATAAGACAAGGACCAGAGACTCGGATTTTATGGAGAGAACGTTGAATGAGTTTTTGGATTCAAAGCTTGGCGGAGACCCTCAGAAGAAGCCACAAAAAATCTCTGTAAGAATTGTTAGAGCTCAATCAGATGTGGATACGATAAATCTGGCACCTGGAATGTTCTCAAACGAGTTTCTGAAGAAGTACAAAGACAAGGTCCAGCGAAGTGTCCGAACAATTTTTGTGTTTCAAAGACAGAAGGGAATCGAGCAGTTGTTCTTCATCATCTTCACTTCTGAGTACCCAAACCATGGAGATGGCCCATCATGGTTCGTATTGGATTACCTGGATAGTGTCCAACATTTCCAACCACACAGCTTCAAAACCGAGGTGTACAATGAAATTGTACTAACCTATTTTGATTGGATGAGGCGGACTGGATTCCTGAAGGGATACATTTGGGTGGATCCCCCACAACCTGGAGATGACTACCTACTAAATATCCACCCACCCCAGCAGAAGTACCCGGGACCCGAACGCCTTCAGAATTGGTATTCGAATGTGTTGGCAAAAGGAAGGACTCGAGGACTGGTGAGAGAATTCCGAGATTTTGGAGCAGAGAAGAAGCT</canonical>
            <polymorphic>AATCTCAAATCTTTAAAAAAAATTCAACTTTCCAGGTCCCCCAACTTACCTGTTGCTCTGAAGTCGCCGATCTTCAATTCAGCACCTCCAACAGAAAATGCCAAGCCGACCAAGATTGCCGAATCAAAGCTATGGAGCCATATATGGTGGAAAAGAAGATTCAAGGATCTATCGAAATCAATTACTGCGTTGAATGCTTCTCAAAAGCCACTGATCTTGATAAGAAGAAATGGAAGAGGATGATTAATGTGAATGAGAAGATTGAGAAGGTTCTCAGCTGCCAGGAATGTGGAATGCTCTGGCATGAGCAATGCTCCTTCTACTATGATGATCCAGAAGAGTTTATCTGTAGATCTTGTGATTCGGATGCTTATCAGACTGTGCTAACTGATAAGACAAGGACCAGAGACTCGGATTTTATGGAGAGAACGTTGAATGAGTTTTTGGATTCAAAGCTTGGCGGAGACCCTCAGAAGAAGCCACAAAAAATCTCTGTAAGRATTGTTAGAGCTCAATCAGATGTGGATACGATAAATCTGGCACCTGGAATGTTCTCAAACGAGTTTCTGAAGAAGTACAAAGACAAGGTCCAGCGAAGTGTCCGAACAATTTTTGTGTTTCAAAGACAGAAGGGAATCGAGCAGTTGTTCTTCATCATCTTCACTTCTGAGTACCCAAACCATGGAGATGGCCCATCATGGTTCGTATTGGATTACCTGGATAGTGTCCAACATTTCCAACCACACAGCTTCAAAACCGAGGTGTACAATGAAATTGTACTAACCTATTTTGATTGGATGAGGCGGACTGGATTCCTGAAGGGATACATTTGGGTGGATCCCCCACAACCTGGAGATGACTACCTACTAAATATCCACCCACCCCAGCAGAAGTACCCGGGACCCGAACGCCTTCAGAATTGGTATTCGAATGTGTTGGCAAAAGGAAGGACTCGAGGACTGGTGAGAGAATTCCGAGATTTTGGAGCAGAGAAGAAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>320 165 145 108 104 55 52 31 20</canonical_bands>
                <polymorphic_bands>428 165 145 104 55 52 31 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAGAACGTTGAATGAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTCAGAAGTGAAGATGATGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGAGAACGTTGAATGAGTTTTTGGATTCAAAGCTTGGCGGAGACCCTCAGAAGAAGCCACAAAAAATCTCTGTAAGAATTGTTAGAGCTCAATCAGATGTGGATACGATAAATCTGGCACCTGGAATGTTCTCAAACGAGTTTCTGAAGAAGTACAAAGACAAGGTCCAGCGAAGTGTCCGAACAATTTTTGTGTTTCAAAGACAGAAGGGAATCGAGCAGTTGTTCTTCATCATCTTCACTTCTGAGT</canonical_amplicon>
		<polymorphic_amplicon>GAGAGAACGTTGAATGAGTTTTTGGATTCAAAGCTTGGCGGAGACCCTCAGAAGAAGCCACAAAAAATCTCTGTAAGRATTGTTAGAGCTCAATCAGATGTGGATACGATAAATCTGGCACCTGGAATGTTCTCAAACGAGTTTCTGAAGAAGTACAAAGACAAGGTCCAGCGAAGTGTCCGAACAATTTTTGTGTTTCAAAGACAGAAGGGAATCGAGCAGTTGTTCTTCATCATCTTCACTTCTGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34323</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>252914</contig_pos>
        <strand>+</strand>
        <context>ATCAGATGTG[A/G]ATACGATARA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAGCCACAAAAAATCTCTGTAAGAATTGTTAGAGCTCAATCAGATGTG</left_flank>
        <right_flank>ATACGATAAATCTGGCACCTGGAATGTTCTCAAACGAGTTTCTGAAGAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTTTCCAGGTCCCCCAACTTACCTGTTGCTCTGAAGTCGCCGATCTTCAATTCAGCACCTCCAACAGAAAATGCCAAGCCGACCAAGATTGCCGAATCAAAGCTATGGAGCCATATATGGTGGAAAAGAAGATTCAAGGATCTATCGAAATCAATTACTGCGTTGAATGCTTCTCAAAAGCCACTGATCTTGATAAGAAGAAATGGAAGAGGATGATTAATGTGAATGAGAAGATTGAGAAGGTTCTCAGCTGCCAGGAATGTGGAATGCTCTGGCATGAGCAATGCTCCTTCTACTATGATGATCCAGAAGAGTTTATCTGTAGATCTTGTGATTCGGATGCTTATCAGACTGTGCTAACTGATAAGACAAGGACCAGAGACTCGGATTTTATGGAGAGAACGTTGAATGAGTTTTTGGATTCAAAGCTTGGCGGAGACCCTCAGAAGAAGCCACAAAAAATCTCTGTAAGAATTGTTAGAGCTCAATCAGATGTGGATACGATAAATCTGGCACCTGGAATGTTCTCAAACGAGTTTCTGAAGAAGTACAAAGACAAGGTCCAGCGAAGTGTCCGAACAATTTTTGTGTTTCAAAGACAGAAGGGAATCGAGCAGTTGTTCTTCATCATCTTCACTTCTGAGTACCCAAACCATGGAGATGGCCCATCATGGTTCGTATTGGATTACCTGGATAGTGTCCAACATTTCCAACCACACAGCTTCAAAACCGAGGTGTACAATGAAATTGTACTAACCTATTTTGATTGGATGAGGCGGACTGGATTCCTGAAGGGATACATTTGGGTGGATCCCCCACAACCTGGAGATGACTACCTACTAAATATCCACCCACCCCAGCAGAAGTACCCGGGACCCGAACGCCTTCAGAATTGGTATTCGAATGTGTTGGCAAAAGGAAGGACTCGAGGACTGGTGAGAGAATTCCGAGATTTTGGAGCAGAGAAGAAGCTAAGGAAGTTCAAAAAGCCAACGGAT</canonical>
            <polymorphic>AACTTTCCAGGTCCCCCAACTTACCTGTTGCTCTGAAGTCGCCGATCTTCAATTCAGCACCTCCAACAGAAAATGCCAAGCCGACCAAGATTGCCGAATCAAAGCTATGGAGCCATATATGGTGGAAAAGAAGATTCAAGGATCTATCGAAATCAATTACTGCGTTGAATGCTTCTCAAAAGCCACTGATCTTGATAAGAAGAAATGGAAGAGGATGATTAATGTGAATGAGAAGATTGAGAAGGTTCTCAGCTGCCAGGAATGTGGAATGCTCTGGCATGAGCAATGCTCCTTCTACTATGATGATCCAGAAGAGTTTATCTGTAGATCTTGTGATTCGGATGCTTATCAGACTGTGCTAACTGATAAGACAAGGACCAGAGACTCGGATTTTATGGAGAGAACGTTGAATGAGTTTTTGGATTCAAAGCTTGGCGGAGACCCTCAGAAGAAGCCACAAAAAATCTCTGTAAGAATTGTTAGAGCTCAATCAGATGTGRATACGATAAATCTGGCACCTGGAATGTTCTCAAACGAGTTTCTGAAGAAGTACAAAGACAAGGTCCAGCGAAGTGTCCGAACAATTTTTGTGTTTCAAAGACAGAAGGGAATCGAGCAGTTGTTCTTCATCATCTTCACTTCTGAGTACCCAAACCATGGAGATGGCCCATCATGGTTCGTATTGGATTACCTGGATAGTGTCCAACATTTCCAACCACACAGCTTCAAAACCGAGGTGTACAATGAAATTGTACTAACCTATTTTGATTGGATGAGGCGGACTGGATTCCTGAAGGGATACATTTGGGTGGATCCCCCACAACCTGGAGATGACTACCTACTAAATATCCACCCACCCCAGCAGAAGTACCCGGGACCCGAACGCCTTCAGAATTGGTATTCGAATGTGTTGGCAAAAGGAAGGACTCGAGGACTGGTGAGAGAATTCCGAGATTTTGGAGCAGAGAAGAAGCTAAGGAAGTTCAAAAAGCCAACGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAGAACGTTGAATGAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTCAGAAGTGAAGATGATGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGAGAACGTTGAATGAGTTTTTGGATTCAAAGCTTGGCGGAGACCCTCAGAAGAAGCCACAAAAAATCTCTGTAAGAATTGTTAGAGCTCAATCAGATGTGGATACGATAAATCTGGCACCTGGAATGTTCTCAAACGAGTTTCTGAAGAAGTACAAAGACAAGGTCCAGCGAAGTGTCCGAACAATTTTTGTGTTTCAAAGACAGAAGGGAATCGAGCAGTTGTTCTTCATCATCTTCACTTCTGAGT</canonical_amplicon>
		<polymorphic_amplicon>GAGAGAACGTTGAATGAGTTTTTGGATTCAAAGCTTGGCGGAGACCCTCAGAAGAAGCCACAAAAAATCTCTGTAAGAATTGTTAGAGCTCAATCAGATGTGRATACGATAAATCTGGCACCTGGAATGTTCTCAAACGAGTTTCTGAAGAAGTACAAAGACAAGGTCCAGCGAAGTGTCCGAACAATTTTTGTGTTTCAAAGACAGAAGGGAATCGAGCAGTTGTTCTTCATCATCTTCACTTCTGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34324</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>252923</contig_pos>
        <strand>+</strand>
        <context>GRATACGATA[A/G]ATCTGGCACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAATCTCTGTAAGAATTGTTAGAGCTCAATCAGATGTGGATACGATA</left_flank>
        <right_flank>ATCTGGCACCTGGAATGTTCTCAAACGAGTTTCTGAAGAAGTACAAAGAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTCCCCCAACTTACCTGTTGCTCTGAAGTCGCCGATCTTCAATTCAGCACCTCCAACAGAAAATGCCAAGCCGACCAAGATTGCCGAATCAAAGCTATGGAGCCATATATGGTGGAAAAGAAGATTCAAGGATCTATCGAAATCAATTACTGCGTTGAATGCTTCTCAAAAGCCACTGATCTTGATAAGAAGAAATGGAAGAGGATGATTAATGTGAATGAGAAGATTGAGAAGGTTCTCAGCTGCCAGGAATGTGGAATGCTCTGGCATGAGCAATGCTCCTTCTACTATGATGATCCAGAAGAGTTTATCTGTAGATCTTGTGATTCGGATGCTTATCAGACTGTGCTAACTGATAAGACAAGGACCAGAGACTCGGATTTTATGGAGAGAACGTTGAATGAGTTTTTGGATTCAAAGCTTGGCGGAGACCCTCAGAAGAAGCCACAAAAAATCTCTGTAAGAATTGTTAGAGCTCAATCAGATGTGGATACGATAAATCTGGCACCTGGAATGTTCTCAAACGAGTTTCTGAAGAAGTACAAAGACAAGGTCCAGCGAAGTGTCCGAACAATTTTTGTGTTTCAAAGACAGAAGGGAATCGAGCAGTTGTTCTTCATCATCTTCACTTCTGAGTACCCAAACCATGGAGATGGCCCATCATGGTTCGTATTGGATTACCTGGATAGTGTCCAACATTTCCAACCACACAGCTTCAAAACCGAGGTGTACAATGAAATTGTACTAACCTATTTTGATTGGATGAGGCGGACTGGATTCCTGAAGGGATACATTTGGGTGGATCCCCCACAACCTGGAGATGACTACCTACTAAATATCCACCCACCCCAGCAGAAGTACCCGGGACCCGAACGCCTTCAGAATTGGTATTCGAATGTGTTGGCAAAAGGAAGGACTCGAGGACTGGTGAGAGAATTCCGAGATTTTGGAGCAGAGAAGAAGCTAAGGAAGTTCAAAAAGCCAACGGATCTTCCATTC</canonical>
            <polymorphic>GGTCCCCCAACTTACCTGTTGCTCTGAAGTCGCCGATCTTCAATTCAGCACCTCCAACAGAAAATGCCAAGCCGACCAAGATTGCCGAATCAAAGCTATGGAGCCATATATGGTGGAAAAGAAGATTCAAGGATCTATCGAAATCAATTACTGCGTTGAATGCTTCTCAAAAGCCACTGATCTTGATAAGAAGAAATGGAAGAGGATGATTAATGTGAATGAGAAGATTGAGAAGGTTCTCAGCTGCCAGGAATGTGGAATGCTCTGGCATGAGCAATGCTCCTTCTACTATGATGATCCAGAAGAGTTTATCTGTAGATCTTGTGATTCGGATGCTTATCAGACTGTGCTAACTGATAAGACAAGGACCAGAGACTCGGATTTTATGGAGAGAACGTTGAATGAGTTTTTGGATTCAAAGCTTGGCGGAGACCCTCAGAAGAAGCCACAAAAAATCTCTGTAAGAATTGTTAGAGCTCAATCAGATGTGGATACGATARATCTGGCACCTGGAATGTTCTCAAACGAGTTTCTGAAGAAGTACAAAGACAAGGTCCAGCGAAGTGTCCGAACAATTTTTGTGTTTCAAAGACAGAAGGGAATCGAGCAGTTGTTCTTCATCATCTTCACTTCTGAGTACCCAAACCATGGAGATGGCCCATCATGGTTCGTATTGGATTACCTGGATAGTGTCCAACATTTCCAACCACACAGCTTCAAAACCGAGGTGTACAATGAAATTGTACTAACCTATTTTGATTGGATGAGGCGGACTGGATTCCTGAAGGGATACATTTGGGTGGATCCCCCACAACCTGGAGATGACTACCTACTAAATATCCACCCACCCCAGCAGAAGTACCCGGGACCCGAACGCCTTCAGAATTGGTATTCGAATGTGTTGGCAAAAGGAAGGACTCGAGGACTGGTGAGAGAATTCCGAGATTTTGGAGCAGAGAAGAAGCTAAGGAAGTTCAAAAAGCCAACGGATCTTCCATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAGAACGTTGAATGAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTCAGAAGTGAAGATGATGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGAGAACGTTGAATGAGTTTTTGGATTCAAAGCTTGGCGGAGACCCTCAGAAGAAGCCACAAAAAATCTCTGTAAGAATTGTTAGAGCTCAATCAGATGTGGATACGATAAATCTGGCACCTGGAATGTTCTCAAACGAGTTTCTGAAGAAGTACAAAGACAAGGTCCAGCGAAGTGTCCGAACAATTTTTGTGTTTCAAAGACAGAAGGGAATCGAGCAGTTGTTCTTCATCATCTTCACTTCTGAGT</canonical_amplicon>
		<polymorphic_amplicon>GAGAGAACGTTGAATGAGTTTTTGGATTCAAAGCTTGGCGGAGACCCTCAGAAGAAGCCACAAAAAATCTCTGTAAGAATTGTTAGAGCTCAATCAGATGTGGATACGATARATCTGGCACCTGGAATGTTCTCAAACGAGTTTCTGAAGAAGTACAAAGACAAGGTCCAGCGAAGTGTCCGAACAATTTTTGTGTTTCAAAGACAGAAGGGAATCGAGCAGTTGTTCTTCATCATCTTCACTTCTGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34325</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>255661</contig_pos>
        <strand>+</strand>
        <context>GAGGGTACAA[C/T]Aattcggggg</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGAAAATTTCAGAGTTTACTAAAGAAAATTGGACCTTCGGAGGGTACAA</left_flank>
        <right_flank>AATTCGGGGGTACAAGGGCTACAAAGTAATTTAGGAGTACAAAATCCACA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCTACAGTAATTTTTTCCATGAGAAGCCTACCCAAACCGTCAACTACGAGCTCAATTATCTCGGTTCCTGTGAGGGATATCAAAATACTGTCAACTGATAAAATATTTATTAACAATTTATCAGTAGAAATCTTTTTTATCTTTGACAGGAACCGAGATAATTCAGCAGTCAGTGTGCTAAATAATAGAATCATCTCCTAACTCTCAGCTTTGAGCTAAGTTATCTTGGTTCCTCTTGAAGAAATCAAGAAGTATTCAACTGATAAATTGTTTATCATAACATCACCAATATTTTATCCGTTGACATTATTTTGATATCTCTCATAGGAACTGAGATAATTGAGCTCAAAAAGTACATGTCACTTTTCGTTGAATTTTGGGCCCCTCCAATAGAAGATAATCAACTTCGAAGTCCTCAAAAAAATCATCTGAAATTTTTCGATTTTTCGGAAAATTTCAGAGTTTACTAAAGAAAATTGGACCTTCGGAGGGTACAATAATTCGGGGGTACAAGGGCTACAAAGTAATTTAGGAGTACAAAATCCACAATTCGGGGATACAAACTAAGCTTTTTTTCCGGTGTTTTGTACCTTCGAATTGATGAATTCGTACCCCTTAATTGCTTTGTACCCCAATGACCCCTAAATTTTTGTACCCTCCGAATTATTTGCCCACTTTCTTGTAGAAATCCAATGAAGCGAGATAAGCGGTTTTAAAGTGGCAAAACTCTTATTACAGTAAACGTTTGATTACAAACGGCAAACCGGGATAGAAGGGACCCTCATATCTATAAAGTTTGAACTGAATTATCTCATTTCCTGTACAAGATATCAAAAATTTCTCAACCAATGGAATATTGATGATATTATGATAAATAATTTATCAGTTGACAACTGTTTGATATTTTGCATAGAAAACAATATGAATAAGCTCAAACTTGACAGAATTAAAATTCAATTTACCTGAAATTCGTGTCCATATTCTCCAAGATAACCTCC</canonical>
            <polymorphic>TGGCTACAGTAATTTTTTCCATGAGAAGCCTACCCAAACCGTCAACTACGAGCTCAATTATCTCGGTTCCTGTGAGGGATATCAAAATACTGTCAACTGATAAAATATTTATTAACAATTTATCAGTAGAAATCTTTTTTATCTTTGACAGGAACCGAGATAATTCAGCAGTCAGTGTGCTAAATAATAGAATCATCTCCTAACTCTCAGCTTTGAGCTAAGTTATCTTGGTTCCTCTTGAAGAAATCAAGAAGTATTCAACTGATAAATTGTTTATCATAACATCACCAATATTTTATCCGTTGACATTATTTTGATATCTCTCATAGGAACTGAGATAATTGAGCTCAAAAAGTACATGTCACTTTTCGTTGAATTTTGGGCCCCTCCAATAGAAGATAATCAACTTCGAAGTCCTCAAAAAAATCATCTGAAATTTTTCGATTTTTCGGAAAATTTCAGAGTTTACTAAAGAAAATTGGACCTTCGGAGGGTACAAYAATTCGGGGGTACAAGGGCTACAAAGTAATTTAGGAGTACAAAATCCACAATTCGGGGATACAAACTAAGCTTTTTTTCCGGTGTTTTGTACCTTCGAATTGATGAATTCGTACCCCTTAATTGCTTTGTACCCCAATGACCCCTAAATTTTTGTACCCTCCGAATTATTTGCCCACTTTCTTGTAGAAATCCAATGAAGCGAGATAAGCGGTTTTAAAGTGGCAAAACTCTTATTACAGTAAACGTTTGATTACAAACGGCAAACCGGGATAGAAGGGACCCTCATATCTATAAAGTTTGAACTGAATTATCTCATTTCCTGTACAAGATATCAAAAATTTCTCAACCAATGGAATATTGATGATATTATGATAAATAATTTATCAGTTGACAACTGTTTGATATTTTGCATAGAAAACAATATGAATAAGCTCAAACTTGACAGAATTAAAATTCAATTTACCTGAAATTCGTGTCCATATTCTCCAAGATAACCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTCACTTTTCGTTGAATTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATAATTCGGAGGGTACAAA</pcr_primer_p2>
		<pcr_amplicon_size>313</pcr_amplicon_size>
		<canonical_amplicon>ATGTCACTTTTCGTTGAATTTTGGGCCCCTCCAATAGAAGATAATCAACTTCGAAGTCCTCAAAAAAATCATCTGAAATTTTTCGATTTTTCGGAAAATTTCAGAGTTTACTAAAGAAAATTGGACCTTCGGAGGGTACAATAATTCGGGGGTACAAGGGCTACAAAGTAATTTAGGAGTACAAAATCCACAATTCGGGGATACAAACTAAGCTTTTTTTCCGGTGTTTTGTACCTTCGAATTGATGAATTCGTACCCCTTAATTGCTTTGTACCCCAATGACCCCTAAATTTTTGTACCCTCCGAATTATTT</canonical_amplicon>
		<polymorphic_amplicon>ATGTCACTTTTCGTTGAATTTTGGGCCCCTCCAATAGAAGATAATCAACTTCGAAGTCCTCAAAAAAATCATCTGAAATTTTTCGATTTTTCGGAAAATTTCAGAGTTTACTAAAGAAAATTGGACCTTCGGAGGGTACAAYAATTCGGGGGTACAAGGGCTACAAAGTAATTTAGGAGTACAAAATCCACAATTCGGGGATACAAACTAAGCTTTTTTTCCGGTGTTTTGTACCTTCGAATTGATGAATTCGTACCCCTTAATTGCTTTGTACCCCAATGACCCCTAAATTTTTGTACCCTCCGAATTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34326</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>255780</contig_pos>
        <strand></strand>
        <context>tcgtacccct[T/A]aattgctttg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGCTTTTTTTCCGGTGTTTTGTACCTTCGAATTGATGAATTCGTACCCCT</left_flank>
        <right_flank>AATTGCTTTGTACCCCAATGACCCCTAAATTTTTGTACCCTCCGAATTAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATCAGTAGAAATCTTTTTTATCTTTGACAGGAACCGAGATAATTCAGCAGTCAGTGTGCTAAATAATAGAATCATCTCCTAACTCTCAGCTTTGAGCTAAGTTATCTTGGTTCCTCTTGAAGAAATCAAGAAGTATTCAACTGATAAATTGTTTATCATAACATCACCAATATTTTATCCGTTGACATTATTTTGATATCTCTCATAGGAACTGAGATAATTGAGCTCAAAAAGTACATGTCACTTTTCGTTGAATTTTGGGCCCCTCCAATAGAAGATAATCAACTTCGAAGTCCTCAAAAAAATCATCTGAAATTTTTCGATTTTTCGGAAAATTTCAGAGTTTACTAAAGAAAATTGGACCTTCGGAGGGTACAATAATTCGGGGGTACAAGGGCTACAAAGTAATTTAGGAGTACAAAATCCACAATTCGGGGATACAAACTAAGCTTTTTTTCCGGTGTTTTGTACCTTCGAATTGATGAATTCGTACCCCTTAATTGCTTTGTACCCCAATGACCCCTAAATTTTTGTACCCTCCGAATTATTTGCCCACTTTCTTGTAGAAATCCAATGAAGCGAGATAAGCGGTTTTAAAGTGGCAAAACTCTTATTACAGTAAACGTTTGATTACAAACGGCAAACCGGGATAGAAGGGACCCTCATATCTATAAAGTTTGAACTGAATTATCTCATTTCCTGTACAAGATATCAAAAATTTCTCAACCAATGGAATATTGATGATATTATGATAAATAATTTATCAGTTGACAACTGTTTGATATTTTGCATAGAAAACAATATGAATAAGCTCAAACTTGACAGAATTAAAATTCAATTTACCTGAAATTCGTGTCCATATTCTCCAAGATAACCTCCCAGCCAATCGGGTTCAGCTGCTTGTAGGTTTTCATGTTTTGGCTGAAAAATTAAAAAATTGCAAGAAAAATAAAGGACGAAACAACAATTGCTGAATCTAATACTGTAAAACCTGTAAT</canonical>
            <polymorphic>TTATCAGTAGAAATCTTTTTTATCTTTGACAGGAACCGAGATAATTCAGCAGTCAGTGTGCTAAATAATAGAATCATCTCCTAACTCTCAGCTTTGAGCTAAGTTATCTTGGTTCCTCTTGAAGAAATCAAGAAGTATTCAACTGATAAATTGTTTATCATAACATCACCAATATTTTATCCGTTGACATTATTTTGATATCTCTCATAGGAACTGAGATAATTGAGCTCAAAAAGTACATGTCACTTTTCGTTGAATTTTGGGCCCCTCCAATAGAAGATAATCAACTTCGAAGTCCTCAAAAAAATCATCTGAAATTTTTCGATTTTTCGGAAAATTTCAGAGTTTACTAAAGAAAATTGGACCTTCGGAGGGTACAATAATTCGGGGGTACAAGGGCTACAAAGTAATTTAGGAGTACAAAATCCACAATTCGGGGATACAAACTAAGCTTTTTTTCCGGTGTTTTGTACCTTCGAATTGATGAATTCGTACCCCTWAATTGCTTTGTACCCCAATGACCCCTAAATTTTTGTACCCTCCGAATTATTTGCCCACTTTCTTGTAGAAATCCAATGAAGCGAGATAAGCGGTTTTAAAGTGGCAAAACTCTTATTACAGTAAACGTTTGATTACAAACGGCAAACCGGGATAGAAGGGACCCTCATATCTATAAAGTTTGAACTGAATTATCTCATTTCCTGTACAAGATATCAAAAATTTCTCAACCAATGGAATATTGATGATATTATGATAAATAATTTATCAGTTGACAACTGTTTGATATTTTGCATAGAAAACAATATGAATAAGCTCAAACTTGACAGAATTAAAATTCAATTTACCTGAAATTCGTGTCCATATTCTCCAAGATAACCTCCCAGCCAATCGGGTTCAGCTGCTTGTAGGTTTTCATGTTTTGGCTGAAAAATTAAAAAATTGCAAGAAAAATAAAGGACGAAACAACAATTGCTGAATCTAATACTGTAAAACCTGTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>499 234 102 97 68</canonical_bands>
                <polymorphic_bands>596 234 102 68</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTCACTTTTCGTTGAATTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATAATTCGGAGGGTACAAA</pcr_primer_p2>
		<pcr_amplicon_size>313</pcr_amplicon_size>
		<canonical_amplicon>ATGTCACTTTTCGTTGAATTTTGGGCCCCTCCAATAGAAGATAATCAACTTCGAAGTCCTCAAAAAAATCATCTGAAATTTTTCGATTTTTCGGAAAATTTCAGAGTTTACTAAAGAAAATTGGACCTTCGGAGGGTACAATAATTCGGGGGTACAAGGGCTACAAAGTAATTTAGGAGTACAAAATCCACAATTCGGGGATACAAACTAAGCTTTTTTTCCGGTGTTTTGTACCTTCGAATTGATGAATTCGTACCCCTTAATTGCTTTGTACCCCAATGACCCCTAAATTTTTGTACCCTCCGAATTATTT</canonical_amplicon>
		<polymorphic_amplicon>ATGTCACTTTTCGTTGAATTTTGGGCCCCTCCAATAGAAGATAATCAACTTCGAAGTCCTCAAAAAAATCATCTGAAATTTTTCGATTTTTCGGAAAATTTCAGAGTTTACTAAAGAAAATTGGACCTTCGGAGGGTACAATAATTCGGGGGTACAAGGGCTACAAAGTAATTTAGGAGTACAAAATCCACAATTCGGGGATACAAACTAAGCTTTTTTTCCGGTGTTTTGTACCTTCGAATTGATGAATTCGTACCCCTWAATTGCTTTGTACCCCAATGACCCCTAAATTTTTGTACCCTCCGAATTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34327</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>255791</contig_pos>
        <strand></strand>
        <context>aattgctttg[T/C]accccaatga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CGGTGTTTTGTACCTTCGAATTGATGAATTCGTACCCCTTAATTGCTTTG</left_flank>
        <right_flank>ACCCCAATGACCCCTAAATTTTTGTACCCTCCGAATTATTTGCCCACTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCTTTTTTATCTTTGACAGGAACCGAGATAATTCAGCAGTCAGTGTGCTAAATAATAGAATCATCTCCTAACTCTCAGCTTTGAGCTAAGTTATCTTGGTTCCTCTTGAAGAAATCAAGAAGTATTCAACTGATAAATTGTTTATCATAACATCACCAATATTTTATCCGTTGACATTATTTTGATATCTCTCATAGGAACTGAGATAATTGAGCTCAAAAAGTACATGTCACTTTTCGTTGAATTTTGGGCCCCTCCAATAGAAGATAATCAACTTCGAAGTCCTCAAAAAAATCATCTGAAATTTTTCGATTTTTCGGAAAATTTCAGAGTTTACTAAAGAAAATTGGACCTTCGGAGGGTACAATAATTCGGGGGTACAAGGGCTACAAAGTAATTTAGGAGTACAAAATCCACAATTCGGGGATACAAACTAAGCTTTTTTTCCGGTGTTTTGTACCTTCGAATTGATGAATTCGTACCCCTTAATTGCTTTGTACCCCAATGACCCCTAAATTTTTGTACCCTCCGAATTATTTGCCCACTTTCTTGTAGAAATCCAATGAAGCGAGATAAGCGGTTTTAAAGTGGCAAAACTCTTATTACAGTAAACGTTTGATTACAAACGGCAAACCGGGATAGAAGGGACCCTCATATCTATAAAGTTTGAACTGAATTATCTCATTTCCTGTACAAGATATCAAAAATTTCTCAACCAATGGAATATTGATGATATTATGATAAATAATTTATCAGTTGACAACTGTTTGATATTTTGCATAGAAAACAATATGAATAAGCTCAAACTTGACAGAATTAAAATTCAATTTACCTGAAATTCGTGTCCATATTCTCCAAGATAACCTCCCAGCCAATCGGGTTCAGCTGCTTGTAGGTTTTCATGTTTTGGCTGAAAAATTAAAAAATTGCAAGAAAAATAAAGGACGAAACAACAATTGCTGAATCTAATACTGTAAAACCTGTAATGGAGAGGATCT</canonical>
            <polymorphic>AATCTTTTTTATCTTTGACAGGAACCGAGATAATTCAGCAGTCAGTGTGCTAAATAATAGAATCATCTCCTAACTCTCAGCTTTGAGCTAAGTTATCTTGGTTCCTCTTGAAGAAATCAAGAAGTATTCAACTGATAAATTGTTTATCATAACATCACCAATATTTTATCCGTTGACATTATTTTGATATCTCTCATAGGAACTGAGATAATTGAGCTCAAAAAGTACATGTCACTTTTCGTTGAATTTTGGGCCCCTCCAATAGAAGATAATCAACTTCGAAGTCCTCAAAAAAATCATCTGAAATTTTTCGATTTTTCGGAAAATTTCAGAGTTTACTAAAGAAAATTGGACCTTCGGAGGGTACAATAATTCGGGGGTACAAGGGCTACAAAGTAATTTAGGAGTACAAAATCCACAATTCGGGGATACAAACTAAGCTTTTTTTCCGGTGTTTTGTACCTTCGAATTGATGAATTCGTACCCCTTAATTGCTTTGYACCCCAATGACCCCTAAATTTTTGTACCCTCCGAATTATTTGCCCACTTTCTTGTAGAAATCCAATGAAGCGAGATAAGCGGTTTTAAAGTGGCAAAACTCTTATTACAGTAAACGTTTGATTACAAACGGCAAACCGGGATAGAAGGGACCCTCATATCTATAAAGTTTGAACTGAATTATCTCATTTCCTGTACAAGATATCAAAAATTTCTCAACCAATGGAATATTGATGATATTATGATAAATAATTTATCAGTTGACAACTGTTTGATATTTTGCATAGAAAACAATATGAATAAGCTCAAACTTGACAGAATTAAAATTCAATTTACCTGAAATTCGTGTCCATATTCTCCAAGATAACCTCCCAGCCAATCGGGTTCAGCTGCTTGTAGGTTTTCATGTTTTGGCTGAAAAATTAAAAAATTGCAAGAAAAATAAAGGACGAAACAACAATTGCTGAATCTAATACTGTAAAACCTGTAATGGAGAGGATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>306 226 169 139 52 27 25 22 18 16</canonical_bands>
                <polymorphic_bands>306 226 169 139 52 43 27 22 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTCACTTTTCGTTGAATTTT</pcr_primer_p1>
		<pcr_primer_p2>GCTTCATTGGATTTCTACAAGA</pcr_primer_p2>
		<pcr_amplicon_size>343</pcr_amplicon_size>
		<canonical_amplicon>ATGTCACTTTTCGTTGAATTTTGGGCCCCTCCAATAGAAGATAATCAACTTCGAAGTCCTCAAAAAAATCATCTGAAATTTTTCGATTTTTCGGAAAATTTCAGAGTTTACTAAAGAAAATTGGACCTTCGGAGGGTACAATAATTCGGGGGTACAAGGGCTACAAAGTAATTTAGGAGTACAAAATCCACAATTCGGGGATACAAACTAAGCTTTTTTTCCGGTGTTTTGTACCTTCGAATTGATGAATTCGTACCCCTTAATTGCTTTGTACCCCAATGACCCCTAAATTTTTGTACCCTCCGAATTATTTGCCCACTTTCTTGTAGAAATCCAATGAAGC</canonical_amplicon>
		<polymorphic_amplicon>ATGTCACTTTTCGTTGAATTTTGGGCCCCTCCAATAGAAGATAATCAACTTCGAAGTCCTCAAAAAAATCATCTGAAATTTTTCGATTTTTCGGAAAATTTCAGAGTTTACTAAAGAAAATTGGACCTTCGGAGGGTACAATAATTCGGGGGTACAAGGGCTACAAAGTAATTTAGGAGTACAAAATCCACAATTCGGGGATACAAACTAAGCTTTTTTTCCGGTGTTTTGTACCTTCGAATTGATGAATTCGTACCCCTTAATTGCTTTGYACCCCAATGACCCCTAAATTTTTGTACCCTCCGAATTATTTGCCCACTTTCTTGTAGAAATCCAATGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34328</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>255839</contig_pos>
        <strand>+</strand>
        <context>ATTTGCCCAC[C/T]TTCTTGTAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTACCCCAATGACCCCTAAATTTTTGTACCCTCCGAATTATTTGCCCAC</left_flank>
        <right_flank>TTCTTGTAGAAATCCAATGAAGCGAGATAAGCGGTTTTAAAGTGGCAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTAAATAATAGAATCATCTCCTAACTCTCAGCTTTGAGCTAAGTTATCTTGGTTCCTCTTGAAGAAATCAAGAAGTATTCAACTGATAAATTGTTTATCATAACATCACCAATATTTTATCCGTTGACATTATTTTGATATCTCTCATAGGAACTGAGATAATTGAGCTCAAAAAGTACATGTCACTTTTCGTTGAATTTTGGGCCCCTCCAATAGAAGATAATCAACTTCGAAGTCCTCAAAAAAATCATCTGAAATTTTTCGATTTTTCGGAAAATTTCAGAGTTTACTAAAGAAAATTGGACCTTCGGAGGGTACAATAATTCGGGGGTACAAGGGCTACAAAGTAATTTAGGAGTACAAAATCCACAATTCGGGGATACAAACTAAGCTTTTTTTCCGGTGTTTTGTACCTTCGAATTGATGAATTCGTACCCCTTAATTGCTTTGTACCCCAATGACCCCTAAATTTTTGTACCCTCCGAATTATTTGCCCACTTTCTTGTAGAAATCCAATGAAGCGAGATAAGCGGTTTTAAAGTGGCAAAACTCTTATTACAGTAAACGTTTGATTACAAACGGCAAACCGGGATAGAAGGGACCCTCATATCTATAAAGTTTGAACTGAATTATCTCATTTCCTGTACAAGATATCAAAAATTTCTCAACCAATGGAATATTGATGATATTATGATAAATAATTTATCAGTTGACAACTGTTTGATATTTTGCATAGAAAACAATATGAATAAGCTCAAACTTGACAGAATTAAAATTCAATTTACCTGAAATTCGTGTCCATATTCTCCAAGATAACCTCCCAGCCAATCGGGTTCAGCTGCTTGTAGGTTTTCATGTTTTGGCTGAAAAATTAAAAAATTGCAAGAAAAATAAAGGACGAAACAACAATTGCTGAATCTAATACTGTAAAACCTGTAATGGAGAGGATCTTGACTGTTAACTTTGAGTCAATTTATTTCTCTTCCTGTCAAGGATATC</canonical>
            <polymorphic>GCTAAATAATAGAATCATCTCCTAACTCTCAGCTTTGAGCTAAGTTATCTTGGTTCCTCTTGAAGAAATCAAGAAGTATTCAACTGATAAATTGTTTATCATAACATCACCAATATTTTATCCGTTGACATTATTTTGATATCTCTCATAGGAACTGAGATAATTGAGCTCAAAAAGTACATGTCACTTTTCGTTGAATTTTGGGCCCCTCCAATAGAAGATAATCAACTTCGAAGTCCTCAAAAAAATCATCTGAAATTTTTCGATTTTTCGGAAAATTTCAGAGTTTACTAAAGAAAATTGGACCTTCGGAGGGTACAATAATTCGGGGGTACAAGGGCTACAAAGTAATTTAGGAGTACAAAATCCACAATTCGGGGATACAAACTAAGCTTTTTTTCCGGTGTTTTGTACCTTCGAATTGATGAATTCGTACCCCTTAATTGCTTTGTACCCCAATGACCCCTAAATTTTTGTACCCTCCGAATTATTTGCCCACYTTCTTGTAGAAATCCAATGAAGCGAGATAAGCGGTTTTAAAGTGGCAAAACTCTTATTACAGTAAACGTTTGATTACAAACGGCAAACCGGGATAGAAGGGACCCTCATATCTATAAAGTTTGAACTGAATTATCTCATTTCCTGTACAAGATATCAAAAATTTCTCAACCAATGGAATATTGATGATATTATGATAAATAATTTATCAGTTGACAACTGTTTGATATTTTGCATAGAAAACAATATGAATAAGCTCAAACTTGACAGAATTAAAATTCAATTTACCTGAAATTCGTGTCCATATTCTCCAAGATAACCTCCCAGCCAATCGGGTTCAGCTGCTTGTAGGTTTTCATGTTTTGGCTGAAAAATTAAAAAATTGCAAGAAAAATAAAGGACGAAACAACAATTGCTGAATCTAATACTGTAAAACCTGTAATGGAGAGGATCTTGACTGTTAACTTTGAGTCAATTTATTTCTCTTCCTGTCAAGGATATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTCACTTTTCGTTGAATTTT</pcr_primer_p1>
		<pcr_primer_p2>TAAGAGTTTTGCCACTTTAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>376</pcr_amplicon_size>
		<canonical_amplicon>ATGTCACTTTTCGTTGAATTTTGGGCCCCTCCAATAGAAGATAATCAACTTCGAAGTCCTCAAAAAAATCATCTGAAATTTTTCGATTTTTCGGAAAATTTCAGAGTTTACTAAAGAAAATTGGACCTTCGGAGGGTACAATAATTCGGGGGTACAAGGGCTACAAAGTAATTTAGGAGTACAAAATCCACAATTCGGGGATACAAACTAAGCTTTTTTTCCGGTGTTTTGTACCTTCGAATTGATGAATTCGTACCCCTTAATTGCTTTGTACCCCAATGACCCCTAAATTTTTGTACCCTCCGAATTATTTGCCCACTTTCTTGTAGAAATCCAATGAAGCGAGATAAGCGGTTTTAAAGTGGCAAAACTCTTA</canonical_amplicon>
		<polymorphic_amplicon>ATGTCACTTTTCGTTGAATTTTGGGCCCCTCCAATAGAAGATAATCAACTTCGAAGTCCTCAAAAAAATCATCTGAAATTTTTCGATTTTTCGGAAAATTTCAGAGTTTACTAAAGAAAATTGGACCTTCGGAGGGTACAATAATTCGGGGGTACAAGGGCTACAAAGTAATTTAGGAGTACAAAATCCACAATTCGGGGATACAAACTAAGCTTTTTTTCCGGTGTTTTGTACCTTCGAATTGATGAATTCGTACCCCTTAATTGCTTTGTACCCCAATGACCCCTAAATTTTTGTACCCTCCGAATTATTTGCCCACYTTCTTGTAGAAATCCAATGAAGCGAGATAAGCGGTTTTAAAGTGGCAAAACTCTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34329</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>271007</contig_pos>
        <strand>+</strand>
        <context>TGAAAAAAGA[A/T]GAAAAATGCC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAAATTCATTTTCCATTTTTTCTTTTAAATATCGAAATATGAAAAAAGA</left_flank>
        <right_flank>GAAAAATGCCAATTTTTATGTTCATAAGACCCATAAATAGAGACGCAGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCATCGATTCTCAATCTTCGAATATTGACTTTTTCAAATCTTCCAAATAGAAAATCCAAAAATTTGAGCTCAGCTTCTCCTTGGGTTATCCCTATTGGCACTTTCTTTTCCCATCGATTGATTAGATCCACTTTTCGAAAAAATAAATTTCCAAAATGTTTTCGTTTCGAAATTTCCTCAATTTCTTTTTTCGACGGTGGAGATGAGATCCAAAAATTCCAGAATTCATAAAAATCGAAAATCACGGTATCTATAGTTAGAGATAAGGGTTCCAATCGAAAATAATCCAATTTCAGGGGTACTGTAGCTTCAATAGAGCGAATTTGAGGAATATGAAGGGATAGAGAGGCTCTGAAATTTTTTAAAAATTAAATTTTTTTTTTGATCTACACATACTCACCGTTGATCAAATCTCAAATATTTCAGCAGGTTTTTCCAGAAATCTTCAGGAAATTCATTTTCCATTTTTTCTTTTAAATATCGAAATATGAAAAAAGAGGAAAAATGCCAATTTTTATGTTCATAAGACCCATAAATAGAGACGCAGACATAGAAAATAATCAAATTTTGAAATTTTTCGCAATTCAGAAATAGTATAGCTTGTTATCAGTTGGCACAAAAAGTCGAAAAATCAAAAAATCGAATTTCAAAAAGTTTCAGAATTGTTTAGGAGCTTCAAGACCAAAAAATGATTTTACATAAGGTTCTGAAAATCAAAAAATTTTTGAAATATTTACTGAATTTCCTAGAATTTCTGGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCTCAATCTCTGA</canonical>
            <polymorphic>ATCATCGATTCTCAATCTTCGAATATTGACTTTTTCAAATCTTCCAAATAGAAAATCCAAAAATTTGAGCTCAGCTTCTCCTTGGGTTATCCCTATTGGCACTTTCTTTTCCCATCGATTGATTAGATCCACTTTTCGAAAAAATAAATTTCCAAAATGTTTTCGTTTCGAAATTTCCTCAATTTCTTTTTTCGACGGTGGAGATGAGATCCAAAAATTCCAGAATTCATAAAAATCGAAAATCACGGTATCTATAGTTAGAGATAAGGGTTCCAATCGAAAATAATCCAATTTCAGGGGTACTGTAGCTTCAATAGAGCGAATTTGAGGAATATGAAGGGATAGAGAGGCTCTGAAATTTTTTAAAAATTAAATTTTTTTTTTGATCTACACATACTCACCGTTGATCAAATCTCAAATATTTCAGCAGGTTTTTCCAGAAATCTTCAGGAAATTCATTTTCCATTTTTTCTTTTAAATATCGAAATATGAAAAAAGAWGAAAAATGCCAATTTTTATGTTCATAAGACCCATAAATAGAGACGCAGACATAGAAAATAATCAAATTTTGAAATTTTTCGCAATTCAGAAATAGTATAGCTTGTTATCAGTTGGCACAAAAAGTCGAAAAATCAAAAAATCGAATTTCAAAAAGTTTCAGAATTGTTTAGGAGCTTCAAGACCAAAAAATGATTTTACATAAGGTTCTGAAAATCAAAAAATTTTTGAAATATTTACTGAATTTCCTAGAATTTCTGGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCTCAATCTCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAGAGCGAATTTGAGGAATA</pcr_primer_p1>
		<pcr_primer_p2>ATTATTTTCTATGTCTGCGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATAGAGCGAATTTGAGGAATATGAAGGGATAGAGAGGCTCTGAAATTTTTTAAAAATTAAATTTTTTTTTTGATCTACACATACTCACCGTTGATCAAATCTCAAATATTTCAGCAGGTTTTTCCAGAAATCTTCAGGAAATTCATTTTCCATTTTTTCTTTTAAATATCGAAATATGAAAAAAGAGGAAAAATGCCAATTTTTATGTTCATAAGACCCATAAATAGAGACGCAGACATAGAAAATAAT</canonical_amplicon>
		<polymorphic_amplicon>AATAGAGCGAATTTGAGGAATATGAAGGGATAGAGAGGCTCTGAAATTTTTTAAAAATTAAATTTTTTTTTTGATCTACACATACTCACCGTTGATCAAATCTCAAATATTTCAGCAGGTTTTTCCAGAAATCTTCAGGAAATTCATTTTCCATTTTTTCTTTTAAATATCGAAATATGAAAAAAGAWGAAAAATGCCAATTTTTATGTTCATAAGACCCATAAATAGAGACGCAGACATAGAAAATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34330</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>271020</contig_pos>
        <strand>+</strand>
        <context>AAAATGCCAA[A/C]TTTTATGTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCATTTTTTCTTTTAAATATCGAAATATGAAAAAAGAGGAAAAATGCCAA</left_flank>
        <right_flank>TTTTATGTTCATAAGACCCATAAATAGAGACGCAGACATAGAAAATAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCTTCGAATATTGACTTTTTCAAATCTTCCAAATAGAAAATCCAAAAATTTGAGCTCAGCTTCTCCTTGGGTTATCCCTATTGGCACTTTCTTTTCCCATCGATTGATTAGATCCACTTTTCGAAAAAATAAATTTCCAAAATGTTTTCGTTTCGAAATTTCCTCAATTTCTTTTTTCGACGGTGGAGATGAGATCCAAAAATTCCAGAATTCATAAAAATCGAAAATCACGGTATCTATAGTTAGAGATAAGGGTTCCAATCGAAAATAATCCAATTTCAGGGGTACTGTAGCTTCAATAGAGCGAATTTGAGGAATATGAAGGGATAGAGAGGCTCTGAAATTTTTTAAAAATTAAATTTTTTTTTTGATCTACACATACTCACCGTTGATCAAATCTCAAATATTTCAGCAGGTTTTTCCAGAAATCTTCAGGAAATTCATTTTCCATTTTTTCTTTTAAATATCGAAATATGAAAAAAGAGGAAAAATGCCAATTTTTATGTTCATAAGACCCATAAATAGAGACGCAGACATAGAAAATAATCAAATTTTGAAATTTTTCGCAATTCAGAAATAGTATAGCTTGTTATCAGTTGGCACAAAAAGTCGAAAAATCAAAAAATCGAATTTCAAAAAGTTTCAGAATTGTTTAGGAGCTTCAAGACCAAAAAATGATTTTACATAAGGTTCTGAAAATCAAAAAATTTTTGAAATATTTACTGAATTTCCTAGAATTTCTGGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCTCAATCTCTGAATCTCTGAATTTC</canonical>
            <polymorphic>AATCTTCGAATATTGACTTTTTCAAATCTTCCAAATAGAAAATCCAAAAATTTGAGCTCAGCTTCTCCTTGGGTTATCCCTATTGGCACTTTCTTTTCCCATCGATTGATTAGATCCACTTTTCGAAAAAATAAATTTCCAAAATGTTTTCGTTTCGAAATTTCCTCAATTTCTTTTTTCGACGGTGGAGATGAGATCCAAAAATTCCAGAATTCATAAAAATCGAAAATCACGGTATCTATAGTTAGAGATAAGGGTTCCAATCGAAAATAATCCAATTTCAGGGGTACTGTAGCTTCAATAGAGCGAATTTGAGGAATATGAAGGGATAGAGAGGCTCTGAAATTTTTTAAAAATTAAATTTTTTTTTTGATCTACACATACTCACCGTTGATCAAATCTCAAATATTTCAGCAGGTTTTTCCAGAAATCTTCAGGAAATTCATTTTCCATTTTTTCTTTTAAATATCGAAATATGAAAAAAGAGGAAAAATGCCAAMTTTTATGTTCATAAGACCCATAAATAGAGACGCAGACATAGAAAATAATCAAATTTTGAAATTTTTCGCAATTCAGAAATAGTATAGCTTGTTATCAGTTGGCACAAAAAGTCGAAAAATCAAAAAATCGAATTTCAAAAAGTTTCAGAATTGTTTAGGAGCTTCAAGACCAAAAAATGATTTTACATAAGGTTCTGAAAATCAAAAAATTTTTGAAATATTTACTGAATTTCCTAGAATTTCTGGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGCATTTCTGAATTTCTCAATCTCTGAATCTCTGAATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>85 80 66 61 59 58 54 48 35 35 32 25 24 20 18 16 11 10 10 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 5</canonical_bands>
                <polymorphic_bands>112 85 80 66 61 59 48 35 35 32 25 24 20 18 16 11 10 10 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCGTTGATCAAATCTCAAATA</pcr_primer_p1>
		<pcr_primer_p2>TTTTGATTTTTCGACTTTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ACCGTTGATCAAATCTCAAATATTTCAGCAGGTTTTTCCAGAAATCTTCAGGAAATTCATTTTCCATTTTTTCTTTTAAATATCGAAATATGAAAAAAGAGGAAAAATGCCAATTTTTATGTTCATAAGACCCATAAATAGAGACGCAGACATAGAAAATAATCAAATTTTGAAATTTTTCGCAATTCAGAAATAGTATAGCTTGTTATCAGTTGGCACAAAAAGTCGAAAAATCAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACCGTTGATCAAATCTCAAATATTTCAGCAGGTTTTTCCAGAAATCTTCAGGAAATTCATTTTCCATTTTTTCTTTTAAATATCGAAATATGAAAAAAGAGGAAAAATGCCAAMTTTTATGTTCATAAGACCCATAAATAGAGACGCAGACATAGAAAATAATCAAATTTTGAAATTTTTCGCAATTCAGAAATAGTATAGCTTGTTATCAGTTGGCACAAAAAGTCGAAAAATCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34331</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>274844</contig_pos>
        <strand></strand>
        <context>ccgatttatc[A/T]cggtttcytr</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGAACAAGTAAGATTTTTTCAGATTCGCAAAGTTTGAACCGATTTATC</left_flank>
        <right_flank>CGGTTTCCTGGACAGATATCAAAAAGTTGTTAACTGATAATTTGTTTATC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATAGTTTCAGTACACAGGAGAAGATGAGCAAGGTTTTGGCACCAAGGACCATTGATCATAGTTATCGCAAGGTACGTGGTGATTTTTTCTTTGAGCCAATTTATCTAGTTTCCTGTCAAAGGTATGAAAAAATTGTCAACTGAAAAAATATTGGTAGTATCATGGTAAACCATTTTTTAGTTGACACATTTCTGATATCTCTTATGGGAAGCGAGATAATTGAGCTTAAACTTCCTCTTGTCAGTTTGTCATCCCATTGAGCACCGACACCAACAAACAAAAAGAGTACCTGAGCGCAGCTGGAAGTGTCCGATTGGGTAAAATCCTAGAGGATCTGGATCATATGGCTGTCCACGTGGCGTATGTGCACAATTCGGATGGTGGATCTCTCGATGAGCCAATGACACTTCCACGGACAATTGTGACGGCGTCAGTTAAGAGGATCGATTTGAACAAGTAAGATTTTTTCAGATTCGCAAAGTTTGAACCGATTTATCACGGTTTCCTGGACAGATATCAAAAAGTTGTTAACTGATAATTTGTTTATCACAATATCACCAACATTTTATCAGTTGTTAAATTCTTGGTATATTGCATGGGAGCCGAAATAATTGAGCTCAAACTAGACACTAGCCGTTTCAGGGTTGACATCCATCCATCTCGAGACATCATCATTGATGGTCAAGTGACCTATGCTGGCACTAGCAGCATGCAAGTCTGCCTCAGATTGTTCCAGAACGATGAGAGCGAAAATTTAAACCACTTGCTCAAAGCCGAGTTTATTATGGTTGGTCTTAAGTTTTTTCAGGTCCCATTCCCATGTTTTCAGGTATCCCGTGATCCTCTCGATGGTACAAAAAGTGTTCGTGTACATGGGCTAACGGCTAGAACTCCAGATGAGGCGGAGACGATGCACAAAGCCAAGGAGCACTTCAGAAGACTAGGGAGCCCTGGACAACCTACAATGGAGGAGTTCCGAGTTATACATGATATGTATA</canonical>
            <polymorphic>GGATAGTTTCAGTACACAGGAGAAGATGAGCAAGGTTTTGGCACCAAGGACCATTGATCATAGTTATCGCAAGGTACGTGGTGATTTTTTCTTTGAGCCAATTTATCTAGTTTCCTGTCAAAGGTATGAAAAAATTGTCAACTGAAAAAATATTGGTAGTATCATGGTAAACCATTTTTTAGTTGACACATTTCTGATATCTCTTATGGGAAGCGAGATAATTGAGCTTAAACTTCCTCTTGTCAGTTTGTCATCCCATTGAGCACCGACACCAACAAACAAAAAGAGTACCTGAGCGCAGCTGGAAGTGTCCGATTGGGTAAAATCCTAGAGGATCTGGATCATATGGCTGTCCACGTGGCGTATGTGCACAATTCGGATGGTGGATCTCTCGATGAGCCAATGACACTTCCACGGACAATTGTGACGGCGTCAGTTAAGAGGATCGATTTGAACAAGTAAGATTTTTTCAGATTCGCAAAGTTTGAACCGATTTATCWCGGTTTCCTGGACAGATATCAAAAAGTTGTTAACTGATAATTTGTTTATCACAATATCACCAACATTTTATCAGTTGTTAAATTCTTGGTATATTGCATGGGAGCCGAAATAATTGAGCTCAAACTAGACACTAGCCGTTTCAGGGTTGACATCCATCCATCTCGAGACATCATCATTGATGGTCAAGTGACCTATGCTGGCACTAGCAGCATGCAAGTCTGCCTCAGATTGTTCCAGAACGATGAGAGCGAAAATTTAAACCACTTGCTCAAAGCCGAGTTTATTATGGTTGGTCTTAAGTTTTTTCAGGTCCCATTCCCATGTTTTCAGGTATCCCGTGATCCTCTCGATGGTACAAAAAGTGTTCGTGTACATGGGCTAACGGCTAGAACTCCAGATGAGGCGGAGACGATGCACAAAGCCAAGGAGCACTTCAGAAGACTAGGGAGCCCTGGACAACCTACAATGGAGGAGTTCCGAGTTATACATGATATGTATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>105 77 77 74 72 68 61 59 51 46 46 39 37 27 24 23 16 15 14 13 12 9 8 6 6 6 4 3 2</canonical_bands>
                <polymorphic_bands>125 105 77 77 72 68 61 59 46 46 39 37 27 24 23 16 15 14 13 12 9 8 6 6 6 4 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCGATTTGAACAAGTAAGATTT</pcr_primer_p1>
		<pcr_primer_p2>TCGTTCTGGAACAATCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>GATCGATTTGAACAAGTAAGATTTTTTCAGATTCGCAAAGTTTGAACCGATTTATCACGGTTTCCTGGACAGATATCAAAAAGTTGTTAACTGATAATTTGTTTATCACAATATCACCAACATTTTATCAGTTGTTAAATTCTTGGTATATTGCATGGGAGCCGAAATAATTGAGCTCAAACTAGACACTAGCCGTTTCAGGGTTGACATCCATCCATCTCGAGACATCATCATTGATGGTCAAGTGACCTATGCTGGCACTAGCAGCATGCAAGTCTGCCTCAGATTGTTCCAGAACGA</canonical_amplicon>
		<polymorphic_amplicon>GATCGATTTGAACAAGTAAGATTTTTTCAGATTCGCAAAGTTTGAACCGATTTATCWCGGTTTCCTGGACAGATATCAAAAAGTTGTTAACTGATAATTTGTTTATCACAATATCACCAACATTTTATCAGTTGTTAAATTCTTGGTATATTGCATGGGAGCCGAAATAATTGAGCTCAAACTAGACACTAGCCGTTTCAGGGTTGACATCCATCCATCTCGAGACATCATCATTGATGGTCAAGTGACCTATGCTGGCACTAGCAGCATGCAAGTCTGCCTCAGATTGTTCCAGAACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34332</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>274852</contig_pos>
        <strand></strand>
        <context>tcwcggtttc[C/T]trgacagata</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTAAGATTTTTTCAGATTCGCAAAGTTTGAACCGATTTATCACGGTTTC</left_flank>
        <right_flank>TGGACAGATATCAAAAAGTTGTTAACTGATAATTTGTTTATCACAATATC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGTACACAGGAGAAGATGAGCAAGGTTTTGGCACCAAGGACCATTGATCATAGTTATCGCAAGGTACGTGGTGATTTTTTCTTTGAGCCAATTTATCTAGTTTCCTGTCAAAGGTATGAAAAAATTGTCAACTGAAAAAATATTGGTAGTATCATGGTAAACCATTTTTTAGTTGACACATTTCTGATATCTCTTATGGGAAGCGAGATAATTGAGCTTAAACTTCCTCTTGTCAGTTTGTCATCCCATTGAGCACCGACACCAACAAACAAAAAGAGTACCTGAGCGCAGCTGGAAGTGTCCGATTGGGTAAAATCCTAGAGGATCTGGATCATATGGCTGTCCACGTGGCGTATGTGCACAATTCGGATGGTGGATCTCTCGATGAGCCAATGACACTTCCACGGACAATTGTGACGGCGTCAGTTAAGAGGATCGATTTGAACAAGTAAGATTTTTTCAGATTCGCAAAGTTTGAACCGATTTATCACGGTTTCCTGGACAGATATCAAAAAGTTGTTAACTGATAATTTGTTTATCACAATATCACCAACATTTTATCAGTTGTTAAATTCTTGGTATATTGCATGGGAGCCGAAATAATTGAGCTCAAACTAGACACTAGCCGTTTCAGGGTTGACATCCATCCATCTCGAGACATCATCATTGATGGTCAAGTGACCTATGCTGGCACTAGCAGCATGCAAGTCTGCCTCAGATTGTTCCAGAACGATGAGAGCGAAAATTTAAACCACTTGCTCAAAGCCGAGTTTATTATGGTTGGTCTTAAGTTTTTTCAGGTCCCATTCCCATGTTTTCAGGTATCCCGTGATCCTCTCGATGGTACAAAAAGTGTTCGTGTACATGGGCTAACGGCTAGAACTCCAGATGAGGCGGAGACGATGCACAAAGCCAAGGAGCACTTCAGAAGACTAGGGAGCCCTGGACAACCTACAATGGAGGAGTTCCGAGTTATACATGATATGTATAATGAGCTG</canonical>
            <polymorphic>TCAGTACACAGGAGAAGATGAGCAAGGTTTTGGCACCAAGGACCATTGATCATAGTTATCGCAAGGTACGTGGTGATTTTTTCTTTGAGCCAATTTATCTAGTTTCCTGTCAAAGGTATGAAAAAATTGTCAACTGAAAAAATATTGGTAGTATCATGGTAAACCATTTTTTAGTTGACACATTTCTGATATCTCTTATGGGAAGCGAGATAATTGAGCTTAAACTTCCTCTTGTCAGTTTGTCATCCCATTGAGCACCGACACCAACAAACAAAAAGAGTACCTGAGCGCAGCTGGAAGTGTCCGATTGGGTAAAATCCTAGAGGATCTGGATCATATGGCTGTCCACGTGGCGTATGTGCACAATTCGGATGGTGGATCTCTCGATGAGCCAATGACACTTCCACGGACAATTGTGACGGCGTCAGTTAAGAGGATCGATTTGAACAAGTAAGATTTTTTCAGATTCGCAAAGTTTGAACCGATTTATCACGGTTTCYTGGACAGATATCAAAAAGTTGTTAACTGATAATTTGTTTATCACAATATCACCAACATTTTATCAGTTGTTAAATTCTTGGTATATTGCATGGGAGCCGAAATAATTGAGCTCAAACTAGACACTAGCCGTTTCAGGGTTGACATCCATCCATCTCGAGACATCATCATTGATGGTCAAGTGACCTATGCTGGCACTAGCAGCATGCAAGTCTGCCTCAGATTGTTCCAGAACGATGAGAGCGAAAATTTAAACCACTTGCTCAAAGCCGAGTTTATTATGGTTGGTCTTAAGTTTTTTCAGGTCCCATTCCCATGTTTTCAGGTATCCCGTGATCCTCTCGATGGTACAAAAAGTGTTCGTGTACATGGGCTAACGGCTAGAACTCCAGATGAGGCGGAGACGATGCACAAAGCCAAGGAGCACTTCAGAAGACTAGGGAGCCCTGGACAACCTACAATGGAGGAGTTCCGAGTTATACATGATATGTATAATGAGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>500 445 55</canonical_bands>
                <polymorphic_bands>945 55</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>500 445 55</canonical_bands>
                <polymorphic_bands>945 55</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCGATTTGAACAAGTAAGATTT</pcr_primer_p1>
		<pcr_primer_p2>TCGTTCTGGAACAATCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>GATCGATTTGAACAAGTAAGATTTTTTCAGATTCGCAAAGTTTGAACCGATTTATCACGGTTTCCTGGACAGATATCAAAAAGTTGTTAACTGATAATTTGTTTATCACAATATCACCAACATTTTATCAGTTGTTAAATTCTTGGTATATTGCATGGGAGCCGAAATAATTGAGCTCAAACTAGACACTAGCCGTTTCAGGGTTGACATCCATCCATCTCGAGACATCATCATTGATGGTCAAGTGACCTATGCTGGCACTAGCAGCATGCAAGTCTGCCTCAGATTGTTCCAGAACGA</canonical_amplicon>
		<polymorphic_amplicon>GATCGATTTGAACAAGTAAGATTTTTTCAGATTCGCAAAGTTTGAACCGATTTATCACGGTTTCYTGGACAGATATCAAAAAGTTGTTAACTGATAATTTGTTTATCACAATATCACCAACATTTTATCAGTTGTTAAATTCTTGGTATATTGCATGGGAGCCGAAATAATTGAGCTCAAACTAGACACTAGCCGTTTCAGGGTTGACATCCATCCATCTCGAGACATCATCATTGATGGTCAAGTGACCTATGCTGGCACTAGCAGCATGCAAGTCTGCCTCAGATTGTTCCAGAACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34333</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>274854</contig_pos>
        <strand></strand>
        <context>wcggtttcyt[G/A]gacagatatc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAAGATTTTTTCAGATTCGCAAAGTTTGAACCGATTTATCACGGTTTCCT</left_flank>
        <right_flank>GACAGATATCAAAAAGTTGTTAACTGATAATTTGTTTATCACAATATCAC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTACACAGGAGAAGATGAGCAAGGTTTTGGCACCAAGGACCATTGATCATAGTTATCGCAAGGTACGTGGTGATTTTTTCTTTGAGCCAATTTATCTAGTTTCCTGTCAAAGGTATGAAAAAATTGTCAACTGAAAAAATATTGGTAGTATCATGGTAAACCATTTTTTAGTTGACACATTTCTGATATCTCTTATGGGAAGCGAGATAATTGAGCTTAAACTTCCTCTTGTCAGTTTGTCATCCCATTGAGCACCGACACCAACAAACAAAAAGAGTACCTGAGCGCAGCTGGAAGTGTCCGATTGGGTAAAATCCTAGAGGATCTGGATCATATGGCTGTCCACGTGGCGTATGTGCACAATTCGGATGGTGGATCTCTCGATGAGCCAATGACACTTCCACGGACAATTGTGACGGCGTCAGTTAAGAGGATCGATTTGAACAAGTAAGATTTTTTCAGATTCGCAAAGTTTGAACCGATTTATCACGGTTTCCTGGACAGATATCAAAAAGTTGTTAACTGATAATTTGTTTATCACAATATCACCAACATTTTATCAGTTGTTAAATTCTTGGTATATTGCATGGGAGCCGAAATAATTGAGCTCAAACTAGACACTAGCCGTTTCAGGGTTGACATCCATCCATCTCGAGACATCATCATTGATGGTCAAGTGACCTATGCTGGCACTAGCAGCATGCAAGTCTGCCTCAGATTGTTCCAGAACGATGAGAGCGAAAATTTAAACCACTTGCTCAAAGCCGAGTTTATTATGGTTGGTCTTAAGTTTTTTCAGGTCCCATTCCCATGTTTTCAGGTATCCCGTGATCCTCTCGATGGTACAAAAAGTGTTCGTGTACATGGGCTAACGGCTAGAACTCCAGATGAGGCGGAGACGATGCACAAAGCCAAGGAGCACTTCAGAAGACTAGGGAGCCCTGGACAACCTACAATGGAGGAGTTCCGAGTTATACATGATATGTATAATGAGCTGGT</canonical>
            <polymorphic>AGTACACAGGAGAAGATGAGCAAGGTTTTGGCACCAAGGACCATTGATCATAGTTATCGCAAGGTACGTGGTGATTTTTTCTTTGAGCCAATTTATCTAGTTTCCTGTCAAAGGTATGAAAAAATTGTCAACTGAAAAAATATTGGTAGTATCATGGTAAACCATTTTTTAGTTGACACATTTCTGATATCTCTTATGGGAAGCGAGATAATTGAGCTTAAACTTCCTCTTGTCAGTTTGTCATCCCATTGAGCACCGACACCAACAAACAAAAAGAGTACCTGAGCGCAGCTGGAAGTGTCCGATTGGGTAAAATCCTAGAGGATCTGGATCATATGGCTGTCCACGTGGCGTATGTGCACAATTCGGATGGTGGATCTCTCGATGAGCCAATGACACTTCCACGGACAATTGTGACGGCGTCAGTTAAGAGGATCGATTTGAACAAGTAAGATTTTTTCAGATTCGCAAAGTTTGAACCGATTTATCACGGTTTCCTRGACAGATATCAAAAAGTTGTTAACTGATAATTTGTTTATCACAATATCACCAACATTTTATCAGTTGTTAAATTCTTGGTATATTGCATGGGAGCCGAAATAATTGAGCTCAAACTAGACACTAGCCGTTTCAGGGTTGACATCCATCCATCTCGAGACATCATCATTGATGGTCAAGTGACCTATGCTGGCACTAGCAGCATGCAAGTCTGCCTCAGATTGTTCCAGAACGATGAGAGCGAAAATTTAAACCACTTGCTCAAAGCCGAGTTTATTATGGTTGGTCTTAAGTTTTTTCAGGTCCCATTCCCATGTTTTCAGGTATCCCGTGATCCTCTCGATGGTACAAAAAGTGTTCGTGTACATGGGCTAACGGCTAGAACTCCAGATGAGGCGGAGACGATGCACAAAGCCAAGGAGCACTTCAGAAGACTAGGGAGCCCTGGACAACCTACAATGGAGGAGTTCCGAGTTATACATGATATGTATAATGAGCTGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>498 445 57</canonical_bands>
                <polymorphic_bands>943 57</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>498 445 57</canonical_bands>
                <polymorphic_bands>943 57</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCGATTTGAACAAGTAAGATTT</pcr_primer_p1>
		<pcr_primer_p2>TCGTTCTGGAACAATCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>GATCGATTTGAACAAGTAAGATTTTTTCAGATTCGCAAAGTTTGAACCGATTTATCACGGTTTCCTGGACAGATATCAAAAAGTTGTTAACTGATAATTTGTTTATCACAATATCACCAACATTTTATCAGTTGTTAAATTCTTGGTATATTGCATGGGAGCCGAAATAATTGAGCTCAAACTAGACACTAGCCGTTTCAGGGTTGACATCCATCCATCTCGAGACATCATCATTGATGGTCAAGTGACCTATGCTGGCACTAGCAGCATGCAAGTCTGCCTCAGATTGTTCCAGAACGA</canonical_amplicon>
		<polymorphic_amplicon>GATCGATTTGAACAAGTAAGATTTTTTCAGATTCGCAAAGTTTGAACCGATTTATCACGGTTTCCTRGACAGATATCAAAAAGTTGTTAACTGATAATTTGTTTATCACAATATCACCAACATTTTATCAGTTGTTAAATTCTTGGTATATTGCATGGGAGCCGAAATAATTGAGCTCAAACTAGACACTAGCCGTTTCAGGGTTGACATCCATCCATCTCGAGACATCATCATTGATGGTCAAGTGACCTATGCTGGCACTAGCAGCATGCAAGTCTGCCTCAGATTGTTCCAGAACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34334</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>274875</contig_pos>
        <strand></strand>
        <context>aaaaagttgt[T/C]aactgataat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAGTTTGAACCGATTTATCACGGTTTCCTGGACAGATATCAAAAAGTTGT</left_flank>
        <right_flank>AACTGATAATTTGTTTATCACAATATCACCAACATTTTATCAGTTGTTAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGGTTTTGGCACCAAGGACCATTGATCATAGTTATCGCAAGGTACGTGGTGATTTTTTCTTTGAGCCAATTTATCTAGTTTCCTGTCAAAGGTATGAAAAAATTGTCAACTGAAAAAATATTGGTAGTATCATGGTAAACCATTTTTTAGTTGACACATTTCTGATATCTCTTATGGGAAGCGAGATAATTGAGCTTAAACTTCCTCTTGTCAGTTTGTCATCCCATTGAGCACCGACACCAACAAACAAAAAGAGTACCTGAGCGCAGCTGGAAGTGTCCGATTGGGTAAAATCCTAGAGGATCTGGATCATATGGCTGTCCACGTGGCGTATGTGCACAATTCGGATGGTGGATCTCTCGATGAGCCAATGACACTTCCACGGACAATTGTGACGGCGTCAGTTAAGAGGATCGATTTGAACAAGTAAGATTTTTTCAGATTCGCAAAGTTTGAACCGATTTATCACGGTTTCCTGGACAGATATCAAAAAGTTGTTAACTGATAATTTGTTTATCACAATATCACCAACATTTTATCAGTTGTTAAATTCTTGGTATATTGCATGGGAGCCGAAATAATTGAGCTCAAACTAGACACTAGCCGTTTCAGGGTTGACATCCATCCATCTCGAGACATCATCATTGATGGTCAAGTGACCTATGCTGGCACTAGCAGCATGCAAGTCTGCCTCAGATTGTTCCAGAACGATGAGAGCGAAAATTTAAACCACTTGCTCAAAGCCGAGTTTATTATGGTTGGTCTTAAGTTTTTTCAGGTCCCATTCCCATGTTTTCAGGTATCCCGTGATCCTCTCGATGGTACAAAAAGTGTTCGTGTACATGGGCTAACGGCTAGAACTCCAGATGAGGCGGAGACGATGCACAAAGCCAAGGAGCACTTCAGAAGACTAGGGAGCCCTGGACAACCTACAATGGAGGAGTTCCGAGTTATACATGATATGTATAATGAGCTGGTTGGGAGAAGTATGGTTCATGA</canonical>
            <polymorphic>AAGGTTTTGGCACCAAGGACCATTGATCATAGTTATCGCAAGGTACGTGGTGATTTTTTCTTTGAGCCAATTTATCTAGTTTCCTGTCAAAGGTATGAAAAAATTGTCAACTGAAAAAATATTGGTAGTATCATGGTAAACCATTTTTTAGTTGACACATTTCTGATATCTCTTATGGGAAGCGAGATAATTGAGCTTAAACTTCCTCTTGTCAGTTTGTCATCCCATTGAGCACCGACACCAACAAACAAAAAGAGTACCTGAGCGCAGCTGGAAGTGTCCGATTGGGTAAAATCCTAGAGGATCTGGATCATATGGCTGTCCACGTGGCGTATGTGCACAATTCGGATGGTGGATCTCTCGATGAGCCAATGACACTTCCACGGACAATTGTGACGGCGTCAGTTAAGAGGATCGATTTGAACAAGTAAGATTTTTTCAGATTCGCAAAGTTTGAACCGATTTATCACGGTTTCCTGGACAGATATCAAAAAGTTGTYAACTGATAATTTGTTTATCACAATATCACCAACATTTTATCAGTTGTTAAATTCTTGGTATATTGCATGGGAGCCGAAATAATTGAGCTCAAACTAGACACTAGCCGTTTCAGGGTTGACATCCATCCATCTCGAGACATCATCATTGATGGTCAAGTGACCTATGCTGGCACTAGCAGCATGCAAGTCTGCCTCAGATTGTTCCAGAACGATGAGAGCGAAAATTTAAACCACTTGCTCAAAGCCGAGTTTATTATGGTTGGTCTTAAGTTTTTTCAGGTCCCATTCCCATGTTTTCAGGTATCCCGTGATCCTCTCGATGGTACAAAAAGTGTTCGTGTACATGGGCTAACGGCTAGAACTCCAGATGAGGCGGAGACGATGCACAAAGCCAAGGAGCACTTCAGAAGACTAGGGAGCCCTGGACAACCTACAATGGAGGAGTTCCGAGTTATACATGATATGTATAATGAGCTGGTTGGGAGAAGTATGGTTCATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTTAAC</site>
                <isoschizomers>
                    <enzyme>BstHPI</enzyme>
                    <enzyme>HpaI</enzyme>
                    <enzyme>KspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>383 347 117 108 45</canonical_bands>
                <polymorphic_bands>464 383 108 45</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>234 209 197 179 93 48 40</canonical_bands>
                <polymorphic_bands>234 209 197 179 141 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCGATTTGAACAAGTAAGATTT</pcr_primer_p1>
		<pcr_primer_p2>TCGTTCTGGAACAATCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>GATCGATTTGAACAAGTAAGATTTTTTCAGATTCGCAAAGTTTGAACCGATTTATCACGGTTTCCTGGACAGATATCAAAAAGTTGTTAACTGATAATTTGTTTATCACAATATCACCAACATTTTATCAGTTGTTAAATTCTTGGTATATTGCATGGGAGCCGAAATAATTGAGCTCAAACTAGACACTAGCCGTTTCAGGGTTGACATCCATCCATCTCGAGACATCATCATTGATGGTCAAGTGACCTATGCTGGCACTAGCAGCATGCAAGTCTGCCTCAGATTGTTCCAGAACGA</canonical_amplicon>
		<polymorphic_amplicon>GATCGATTTGAACAAGTAAGATTTTTTCAGATTCGCAAAGTTTGAACCGATTTATCACGGTTTCCTGGACAGATATCAAAAAGTTGTYAACTGATAATTTGTTTATCACAATATCACCAACATTTTATCAGTTGTTAAATTCTTGGTATATTGCATGGGAGCCGAAATAATTGAGCTCAAACTAGACACTAGCCGTTTCAGGGTTGACATCCATCCATCTCGAGACATCATCATTGATGGTCAAGTGACCTATGCTGGCACTAGCAGCATGCAAGTCTGCCTCAGATTGTTCCAGAACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34335</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>274923</contig_pos>
        <strand></strand>
        <context>tatcagttgt[T/C]aaattcttgg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTTAACTGATAATTTGTTTATCACAATATCACCAACATTTTATCAGTTGT</left_flank>
        <right_flank>AAATTCTTGGTATATTGCATGGGAGCCGAAATAATTGAGCTCAAACTAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTGATTTTTTCTTTGAGCCAATTTATCTAGTTTCCTGTCAAAGGTATGAAAAAATTGTCAACTGAAAAAATATTGGTAGTATCATGGTAAACCATTTTTTAGTTGACACATTTCTGATATCTCTTATGGGAAGCGAGATAATTGAGCTTAAACTTCCTCTTGTCAGTTTGTCATCCCATTGAGCACCGACACCAACAAACAAAAAGAGTACCTGAGCGCAGCTGGAAGTGTCCGATTGGGTAAAATCCTAGAGGATCTGGATCATATGGCTGTCCACGTGGCGTATGTGCACAATTCGGATGGTGGATCTCTCGATGAGCCAATGACACTTCCACGGACAATTGTGACGGCGTCAGTTAAGAGGATCGATTTGAACAAGTAAGATTTTTTCAGATTCGCAAAGTTTGAACCGATTTATCACGGTTTCCTGGACAGATATCAAAAAGTTGTTAACTGATAATTTGTTTATCACAATATCACCAACATTTTATCAGTTGTTAAATTCTTGGTATATTGCATGGGAGCCGAAATAATTGAGCTCAAACTAGACACTAGCCGTTTCAGGGTTGACATCCATCCATCTCGAGACATCATCATTGATGGTCAAGTGACCTATGCTGGCACTAGCAGCATGCAAGTCTGCCTCAGATTGTTCCAGAACGATGAGAGCGAAAATTTAAACCACTTGCTCAAAGCCGAGTTTATTATGGTTGGTCTTAAGTTTTTTCAGGTCCCATTCCCATGTTTTCAGGTATCCCGTGATCCTCTCGATGGTACAAAAAGTGTTCGTGTACATGGGCTAACGGCTAGAACTCCAGATGAGGCGGAGACGATGCACAAAGCCAAGGAGCACTTCAGAAGACTAGGGAGCCCTGGACAACCTACAATGGAGGAGTTCCGAGTTATACATGATATGTATAATGAGCTGGTTGGGAGAAGTATGGTTCATGATGTGGCGGTTTTGTCAGTAAGTCAAGTTATTTTAATTACCGTCGACAT</canonical>
            <polymorphic>GGTGATTTTTTCTTTGAGCCAATTTATCTAGTTTCCTGTCAAAGGTATGAAAAAATTGTCAACTGAAAAAATATTGGTAGTATCATGGTAAACCATTTTTTAGTTGACACATTTCTGATATCTCTTATGGGAAGCGAGATAATTGAGCTTAAACTTCCTCTTGTCAGTTTGTCATCCCATTGAGCACCGACACCAACAAACAAAAAGAGTACCTGAGCGCAGCTGGAAGTGTCCGATTGGGTAAAATCCTAGAGGATCTGGATCATATGGCTGTCCACGTGGCGTATGTGCACAATTCGGATGGTGGATCTCTCGATGAGCCAATGACACTTCCACGGACAATTGTGACGGCGTCAGTTAAGAGGATCGATTTGAACAAGTAAGATTTTTTCAGATTCGCAAAGTTTGAACCGATTTATCACGGTTTCCTGGACAGATATCAAAAAGTTGTTAACTGATAATTTGTTTATCACAATATCACCAACATTTTATCAGTTGTYAAATTCTTGGTATATTGCATGGGAGCCGAAATAATTGAGCTCAAACTAGACACTAGCCGTTTCAGGGTTGACATCCATCCATCTCGAGACATCATCATTGATGGTCAAGTGACCTATGCTGGCACTAGCAGCATGCAAGTCTGCCTCAGATTGTTCCAGAACGATGAGAGCGAAAATTTAAACCACTTGCTCAAAGCCGAGTTTATTATGGTTGGTCTTAAGTTTTTTCAGGTCCCATTCCCATGTTTTCAGGTATCCCGTGATCCTCTCGATGGTACAAAAAGTGTTCGTGTACATGGGCTAACGGCTAGAACTCCAGATGAGGCGGAGACGATGCACAAAGCCAAGGAGCACTTCAGAAGACTAGGGAGCCCTGGACAACCTACAATGGAGGAGTTCCGAGTTATACATGATATGTATAATGAGCTGGTTGGGAGAAGTATGGTTCATGATGTGGCGGTTTTGTCAGTAAGTCAAGTTATTTTAATTACCGTCGACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>266 209 179 149 93 48 40 16</canonical_bands>
                <polymorphic_bands>266 227 209 149 93 40 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCGATTTGAACAAGTAAGATTT</pcr_primer_p1>
		<pcr_primer_p2>TCGTTCTGGAACAATCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>GATCGATTTGAACAAGTAAGATTTTTTCAGATTCGCAAAGTTTGAACCGATTTATCACGGTTTCCTGGACAGATATCAAAAAGTTGTTAACTGATAATTTGTTTATCACAATATCACCAACATTTTATCAGTTGTTAAATTCTTGGTATATTGCATGGGAGCCGAAATAATTGAGCTCAAACTAGACACTAGCCGTTTCAGGGTTGACATCCATCCATCTCGAGACATCATCATTGATGGTCAAGTGACCTATGCTGGCACTAGCAGCATGCAAGTCTGCCTCAGATTGTTCCAGAACGA</canonical_amplicon>
		<polymorphic_amplicon>GATCGATTTGAACAAGTAAGATTTTTTCAGATTCGCAAAGTTTGAACCGATTTATCACGGTTTCCTGGACAGATATCAAAAAGTTGTTAACTGATAATTTGTTTATCACAATATCACCAACATTTTATCAGTTGTYAAATTCTTGGTATATTGCATGGGAGCCGAAATAATTGAGCTCAAACTAGACACTAGCCGTTTCAGGGTTGACATCCATCCATCTCGAGACATCATCATTGATGGTCAAGTGACCTATGCTGGCACTAGCAGCATGCAAGTCTGCCTCAGATTGTTCCAGAACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34336</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>274937</contig_pos>
        <strand></strand>
        <context>ttcttggtat[A/C]ttgcatggga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGTTTATCACAATATCACCAACATTTTATCAGTTGTTAAATTCTTGGTAT</left_flank>
        <right_flank>TTGCATGGGAGCCGAAATAATTGAGCTCAAACTAGACACTAGCCGTTTCA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGCCAATTTATCTAGTTTCCTGTCAAAGGTATGAAAAAATTGTCAACTGAAAAAATATTGGTAGTATCATGGTAAACCATTTTTTAGTTGACACATTTCTGATATCTCTTATGGGAAGCGAGATAATTGAGCTTAAACTTCCTCTTGTCAGTTTGTCATCCCATTGAGCACCGACACCAACAAACAAAAAGAGTACCTGAGCGCAGCTGGAAGTGTCCGATTGGGTAAAATCCTAGAGGATCTGGATCATATGGCTGTCCACGTGGCGTATGTGCACAATTCGGATGGTGGATCTCTCGATGAGCCAATGACACTTCCACGGACAATTGTGACGGCGTCAGTTAAGAGGATCGATTTGAACAAGTAAGATTTTTTCAGATTCGCAAAGTTTGAACCGATTTATCACGGTTTCCTGGACAGATATCAAAAAGTTGTTAACTGATAATTTGTTTATCACAATATCACCAACATTTTATCAGTTGTTAAATTCTTGGTATATTGCATGGGAGCCGAAATAATTGAGCTCAAACTAGACACTAGCCGTTTCAGGGTTGACATCCATCCATCTCGAGACATCATCATTGATGGTCAAGTGACCTATGCTGGCACTAGCAGCATGCAAGTCTGCCTCAGATTGTTCCAGAACGATGAGAGCGAAAATTTAAACCACTTGCTCAAAGCCGAGTTTATTATGGTTGGTCTTAAGTTTTTTCAGGTCCCATTCCCATGTTTTCAGGTATCCCGTGATCCTCTCGATGGTACAAAAAGTGTTCGTGTACATGGGCTAACGGCTAGAACTCCAGATGAGGCGGAGACGATGCACAAAGCCAAGGAGCACTTCAGAAGACTAGGGAGCCCTGGACAACCTACAATGGAGGAGTTCCGAGTTATACATGATATGTATAATGAGCTGGTTGGGAGAAGTATGGTTCATGATGTGGCGGTTTTGTCAGTAAGTCAAGTTATTTTAATTACCGTCGACATTGAGCTCAGTTGTC</canonical>
            <polymorphic>TGAGCCAATTTATCTAGTTTCCTGTCAAAGGTATGAAAAAATTGTCAACTGAAAAAATATTGGTAGTATCATGGTAAACCATTTTTTAGTTGACACATTTCTGATATCTCTTATGGGAAGCGAGATAATTGAGCTTAAACTTCCTCTTGTCAGTTTGTCATCCCATTGAGCACCGACACCAACAAACAAAAAGAGTACCTGAGCGCAGCTGGAAGTGTCCGATTGGGTAAAATCCTAGAGGATCTGGATCATATGGCTGTCCACGTGGCGTATGTGCACAATTCGGATGGTGGATCTCTCGATGAGCCAATGACACTTCCACGGACAATTGTGACGGCGTCAGTTAAGAGGATCGATTTGAACAAGTAAGATTTTTTCAGATTCGCAAAGTTTGAACCGATTTATCACGGTTTCCTGGACAGATATCAAAAAGTTGTTAACTGATAATTTGTTTATCACAATATCACCAACATTTTATCAGTTGTTAAATTCTTGGTATMTTGCATGGGAGCCGAAATAATTGAGCTCAAACTAGACACTAGCCGTTTCAGGGTTGACATCCATCCATCTCGAGACATCATCATTGATGGTCAAGTGACCTATGCTGGCACTAGCAGCATGCAAGTCTGCCTCAGATTGTTCCAGAACGATGAGAGCGAAAATTTAAACCACTTGCTCAAAGCCGAGTTTATTATGGTTGGTCTTAAGTTTTTTCAGGTCCCATTCCCATGTTTTCAGGTATCCCGTGATCCTCTCGATGGTACAAAAAGTGTTCGTGTACATGGGCTAACGGCTAGAACTCCAGATGAGGCGGAGACGATGCACAAAGCCAAGGAGCACTTCAGAAGACTAGGGAGCCCTGGACAACCTACAATGGAGGAGTTCCGAGTTATACATGATATGTATAATGAGCTGGTTGGGAGAAGTATGGTTCATGATGTGGCGGTTTTGTCAGTAAGTCAAGTTATTTTAATTACCGTCGACATTGAGCTCAGTTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCGATTTGAACAAGTAAGATTT</pcr_primer_p1>
		<pcr_primer_p2>TCGTTCTGGAACAATCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>GATCGATTTGAACAAGTAAGATTTTTTCAGATTCGCAAAGTTTGAACCGATTTATCACGGTTTCCTGGACAGATATCAAAAAGTTGTTAACTGATAATTTGTTTATCACAATATCACCAACATTTTATCAGTTGTTAAATTCTTGGTATATTGCATGGGAGCCGAAATAATTGAGCTCAAACTAGACACTAGCCGTTTCAGGGTTGACATCCATCCATCTCGAGACATCATCATTGATGGTCAAGTGACCTATGCTGGCACTAGCAGCATGCAAGTCTGCCTCAGATTGTTCCAGAACGA</canonical_amplicon>
		<polymorphic_amplicon>GATCGATTTGAACAAGTAAGATTTTTTCAGATTCGCAAAGTTTGAACCGATTTATCACGGTTTCCTGGACAGATATCAAAAAGTTGTTAACTGATAATTTGTTTATCACAATATCACCAACATTTTATCAGTTGTTAAATTCTTGGTATMTTGCATGGGAGCCGAAATAATTGAGCTCAAACTAGACACTAGCCGTTTCAGGGTTGACATCCATCCATCTCGAGACATCATCATTGATGGTCAAGTGACCTATGCTGGCACTAGCAGCATGCAAGTCTGCCTCAGATTGTTCCAGAACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34337</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>275397</contig_pos>
        <strand></strand>
        <context>TGTCAGTAAG[T/C]CAAGTTATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAGCTGGTTGGGAGAAGTATGGTTCATGATGTGGCGGTTTTGTCAGTAAG</left_flank>
        <right_flank>CAAGTTATTTTAATTACCGTCGACATTGAGCTCAGTTGTCTCGATTCCTG</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATCACCAACATTTTATCAGTTGTTAAATTCTTGGTATATTGCATGGGAGCCGAAATAATTGAGCTCAAACTAGACACTAGCCGTTTCAGGGTTGACATCCATCCATCTCGAGACATCATCATTGATGGTCAAGTGACCTATGCTGGCACTAGCAGCATGCAAGTCTGCCTCAGATTGTTCCAGAACGATGAGAGCGAAAATTTAAACCACTTGCTCAAAGCCGAGTTTATTATGGTTGGTCTTAAGTTTTTTCAGGTCCCATTCCCATGTTTTCAGGTATCCCGTGATCCTCTCGATGGTACAAAAAGTGTTCGTGTACATGGGCTAACGGCTAGAACTCCAGATGAGGCGGAGACGATGCACAAAGCCAAGGAGCACTTCAGAAGACTAGGGAGCCCTGGACAACCTACAATGGAGGAGTTCCGAGTTATACATGATATGTATAATGAGCTGGTTGGGAGAAGTATGGTTCATGATGTGGCGGTTTTGTCAGTAAGTCAAGTTATTTTAATTACCGTCGACATTGAGCTCAGTTGTCTCGATTCCTGTGGAATTTATCAAAAAGTAGTCAACTGATAAATTATTTCTCATAATATCAGCAATATTTTATCAGTTCACAAAGTTTTGATAGCTCTTTTAGGAACCGAGATAATTGAGCTCAAAATGCACAGATAAGGTGGGCACAAAAACAGTATACAACACACTTTGAGCTCCATTATCTTGGTTCCTATGTGAGATATCAAAAAGTGTTCAACTGATAAGTTATTTATCATATTATCACCAATACTTTATCAGTTGACAGATTTTCAATATCTTTTATAGGAACCGATATAATTGAGCTTAAAGTGAACATATAGGGCCCTATTTTGAAATATTCCAGGAATCCGAGATGTGGATGCATAAAACGAACCTATCAGTGACTGAAATCTGCTTCCCTGAATATCAGAACATGTACGGGAAGATTTTTGGAGGATTTCTGATGAGAAAAGCGCTGGAAC</canonical>
            <polymorphic>ATATCACCAACATTTTATCAGTTGTTAAATTCTTGGTATATTGCATGGGAGCCGAAATAATTGAGCTCAAACTAGACACTAGCCGTTTCAGGGTTGACATCCATCCATCTCGAGACATCATCATTGATGGTCAAGTGACCTATGCTGGCACTAGCAGCATGCAAGTCTGCCTCAGATTGTTCCAGAACGATGAGAGCGAAAATTTAAACCACTTGCTCAAAGCCGAGTTTATTATGGTTGGTCTTAAGTTTTTTCAGGTCCCATTCCCATGTTTTCAGGTATCCCGTGATCCTCTCGATGGTACAAAAAGTGTTCGTGTACATGGGCTAACGGCTAGAACTCCAGATGAGGCGGAGACGATGCACAAAGCCAAGGAGCACTTCAGAAGACTAGGGAGCCCTGGACAACCTACAATGGAGGAGTTCCGAGTTATACATGATATGTATAATGAGCTGGTTGGGAGAAGTATGGTTCATGATGTGGCGGTTTTGTCAGTAAGYCAAGTTATTTTAATTACCGTCGACATTGAGCTCAGTTGTCTCGATTCCTGTGGAATTTATCAAAAAGTAGTCAACTGATAAATTATTTCTCATAATATCAGCAATATTTTATCAGTTCACAAAGTTTTGATAGCTCTTTTAGGAACCGAGATAATTGAGCTCAAAATGCACAGATAAGGTGGGCACAAAAACAGTATACAACACACTTTGAGCTCCATTATCTTGGTTCCTATGTGAGATATCAAAAAGTGTTCAACTGATAAGTTATTTATCATATTATCACCAATACTTTATCAGTTGACAGATTTTCAATATCTTTTATAGGAACCGATATAATTGAGCTTAAAGTGAACATATAGGGCCCTATTTTGAAATATTCCAGGAATCCGAGATGTGGATGCATAAAACGAACCTATCAGTGACTGAAATCTGCTTCCCTGAATATCAGAACATGTACGGGAAGATTTTTGGAGGATTTCTGATGAGAAAAGCGCTGGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCTGGTTGGGAGAAGTAT</pcr_primer_p1>
		<pcr_primer_p2>CGTTTTATGCATCCACATCT</pcr_primer_p2>
		<pcr_amplicon_size>460</pcr_amplicon_size>
		<canonical_amplicon>GAGCTGGTTGGGAGAAGTATGGTTCATGATGTGGCGGTTTTGTCAGTAAGTCAAGTTATTTTAATTACCGTCGACATTGAGCTCAGTTGTCTCGATTCCTGTGGAATTTATCAAAAAGTAGTCAACTGATAAATTATTTCTCATAATATCAGCAATATTTTATCAGTTCACAAAGTTTTGATAGCTCTTTTAGGAACCGAGATAATTGAGCTCAAAATGCACAGATAAGGTGGGCACAAAAACAGTATACAACACACTTTGAGCTCCATTATCTTGGTTCCTATGTGAGATATCAAAAAGTGTTCAACTGATAAGTTATTTATCATATTATCACCAATACTTTATCAGTTGACAGATTTTCAATATCTTTTATAGGAACCGATATAATTGAGCTTAAAGTGAACATATAGGGCCCTATTTTGAAATATTCCAGGAATCCGAGATGTGGATGCATAAAACG</canonical_amplicon>
		<polymorphic_amplicon>GAGCTGGTTGGGAGAAGTATGGTTCATGATGTGGCGGTTTTGTCAGTAAGYCAAGTTATTTTAATTACCGTCGACATTGAGCTCAGTTGTCTCGATTCCTGTGGAATTTATCAAAAAGTAGTCAACTGATAAATTATTTCTCATAATATCAGCAATATTTTATCAGTTCACAAAGTTTTGATAGCTCTTTTAGGAACCGAGATAATTGAGCTCAAAATGCACAGATAAGGTGGGCACAAAAACAGTATACAACACACTTTGAGCTCCATTATCTTGGTTCCTATGTGAGATATCAAAAAGTGTTCAACTGATAAGTTATTTATCATATTATCACCAATACTTTATCAGTTGACAGATTTTCAATATCTTTTATAGGAACCGATATAATTGAGCTTAAAGTGAACATATAGGGCCCTATTTTGAAATATTCCAGGAATCCGAGATGTGGATGCATAAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34338</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>277724</contig_pos>
        <strand></strand>
        <context>GWACCATCAA[C/T]GCGCAATGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGACCCCATCAATATACCTTATCAATGGACCCCATCAATGTACCATCAA</left_flank>
        <right_flank>GCGCAATGGTCTTCTGTATGGTCTTTTTTGCGGCAATTGAGTCTCTACTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTGGCACCTCAATTATTGGGGGAATCAACCAATCAAGAACCAAGAATTAACTTTCAGAGATTTCCAGTCATAAAAGTATTGAACAGTTTTGAAATCTAGTTTCAAGTCTTCCTTACCAACATATATGACTGTTAGGCCAGCTATGGACAATCTATGGGCAAGCAACGGACCATCAACGAACCATCAACGGACAAGCAACGGATGGGCAAATGGAAGACAAGCAATGGGCAAGCAACGGATCATCAATCGACCCAATCAATGGATCCCATCAATGGACCATCAATGGGAAAGCTATAGGCAACCAATAGGCAAGCTATGGGCAAGCAACGGACCATCAACAGATCACACCAATGAACCCTGTTAACGGACCATCAACGGACCATCAACGGATGGGCAAATGGGAGACAAGCAATGGGCAAGCAACGGACCATCAATGGACTCAATCAATGGACCCCATCAATATACCTTATCAATGGACCCCATCAATGTACCATCAACGCGCAATGGTCTTCTGTATGGTCTTTTTTGCGGCAATTGAGTCTCTACTTTCCCAGGATCCCAAATGTGCTCAAAAATATAGGACAGGTGAATAAATACTAAATCTTAATACAGACAACATGATGACGTGTGACATAAAATCAATAAAATGTCTTCTAATTTTTTTCCCAGGGACCAAATCAACCAGAAGAATGTCCTGTCCCACTGTTCTCTTTTTTCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTTTGTGGGACCGGGGTAAGTTTCATTTATGGGATTATCTA</canonical>
            <polymorphic>TCTTGGCACCTCAATTATTGGGGGAATCAACCAATCAAGAACCAAGAATTAACTTTCAGAGATTTCCAGTCATAAAAGTATTGAACAGTTTTGAAATCTAGTTTCAAGTCTTCCTTACCAACATATATGACTGTTAGGCCAGCTATGGACAATCTATGGGCAAGCAACGGACCATCAACGAACCATCAACGGACAAGCAACGGATGGGCAAATGGAAGACAAGCAATGGGCAAGCAACGGATCATCAATCGACCCAATCAATGGATCCCATCAATGGACCATCAATGGGAAAGCTATAGGCAACCAATAGGCAAGCTATGGGCAAGCAACGGACCATCAACAGATCACACCAATGAACCCTGTTAACGGACCATCAACGGACCATCAACGGATGGGCAAATGGGAGACAAGCAATGGGCAAGCAACGGACCATCAATGGACTCAATCAATGGACCCCATCAATATACCTTATCAATGGACCCCATCAATGTACCATCAAYGCGCAATGGTCTTCTGTATGGTCTTTTTTGCGGCAATTGAGTCTCTACTTTCCCAGGATCCCAAATGTGCTCAAAAATATAGGACAGGTGAATAAATACTAAATCTTAATACAGACAACATGATGACGTGTGACATAAAATCAATAAAATGTCTTCTAATTTTTTTCCCAGGGACCAAATCAACCAGAAGAATGTCCTGTCCCACTGTTCTCTTTTTTCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTTTGTGGGACCGGGGTAAGTTTCATTTATGGGATTATCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACAGATCACACCAATGAA</pcr_primer_p1>
		<pcr_primer_p2>CTGTCCTATATTTTTGAGCACAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAACAGATCACACCAATGAACCCTGTTAACGGACCATCAACGGACCATCAACGGATGGGCAAATGGGAGACAAGCAATGGGCAAGCAACGGACCATCAATGGACTCAATCAATGGACCCCATCAATATACCTTATCAATGGACCCCATCAATGTACCATCAACGCGCAATGGTCTTCTGTATGGTCTTTTTTGCGGCAATTGAGTCTCTACTTTCCCAGGATCCCAAATGTGCTCAAAAATATAGGACAG</canonical_amplicon>
		<polymorphic_amplicon>CAACAGATCACACCAATGAACCCTGTTAACGGACCATCAACGGACCATCAACGGATGGGCAAATGGGAGACAAGCAATGGGCAAGCAACGGACCATCAATGGACTCAATCAATGGACCCCATCAATATACCTTATCAATGGACCCCATCAATGTACCATCAAYGCGCAATGGTCTTCTGTATGGTCTTTTTTGCGGCAATTGAGTCTCTACTTTCCCAGGATCCCAAATGTGCTCAAAAATATAGGACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34339</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>278294</contig_pos>
        <strand></strand>
        <context>gwrtctgcgg[G/C]tctttgaaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>ACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGG</left_flank>
        <right_flank>TCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAAATATAGGACAGGTGAATAAATACTAAATCTTAATACAGACAACATGATGACGTGTGACATAAAATCAATAAAATGTCTTCTAATTTTTTTCCCAGGGACCAAATCAACCAGAAGAATGTCCTGTCCCACTGTTCTCTTTTTTCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTTTGTGGGACCGGGGTAAGTTTCATTTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGCGGATGGTTTTGATCGTTTTTAAATTTTGTACTCCTCGTGGACAAGCCGACGCGTGAAATTTGAATTTTTGAGTTACAAATCAGCTAAAAACTTGATGTTTCGGTGTAAAACCGCTAGGAATCATTAAAAACTAACATTTCAAAAACATATTTAAGATTTTATGTTTTGTACTCCTCGTGGACAAGTCAACGTTTAAATTTTGAACTTTCGGGTTAATTACAACTTAATACTTGATTTTTCTGTGTAAAATCGCTAGGAATCAGGAAAAATCGAATTTTCTAAGAAAAAGTAGATAATTGAAGATTTTGAATTTTGTACTCCTGGTGGAC</canonical>
            <polymorphic>TCAAAAATATAGGACAGGTGAATAAATACTAAATCTTAATACAGACAACATGATGACGTGTGACATAAAATCAATAAAATGTCTTCTAATTTTTTTCCCAGGGACCAAATCAACCAGAAGAATGTCCTGTCCCACTGTTCTCTTTTTTCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTTTGTGGGACCGGGGTAAGTTTCATTTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGSTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGCGGATGGTTTTGATCGTTTTTAAATTTTGTACTCCTCGTGGACAAGCCGACGCGTGAAATTTGAATTTTTGAGTTACAAATCAGCTAAAAACTTGATGTTTCGGTGTAAAACCGCTAGGAATCATTAAAAACTAACATTTCAAAAACATATTTAAGATTTTATGTTTTGTACTCCTCGTGGACAAGTCAACGTTTAAATTTTGAACTTTCGGGTTAATTACAACTTAATACTTGATTTTTCTGTGTAAAATCGCTAGGAATCAGGAAAAATCGAATTTTCTAAGAAAAAGTAGATAATTGAAGATTTTGAATTTTGTACTCCTGGTGGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATGGGATTATCTATTTATTTATGG</pcr_primer_p1>
		<pcr_primer_p2>GCTTGGTCGAATTTCAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGC</canonical_amplicon>
		<polymorphic_amplicon>TTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGSTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34340</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>278324</contig_pos>
        <strand></strand>
        <context>gtctaaaaca[G/T]acccagacta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACA</left_flank>
        <right_flank>ACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCTTAATACAGACAACATGATGACGTGTGACATAAAATCAATAAAATGTCTTCTAATTTTTTTCCCAGGGACCAAATCAACCAGAAGAATGTCCTGTCCCACTGTTCTCTTTTTTCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTTTGTGGGACCGGGGTAAGTTTCATTTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGCGGATGGTTTTGATCGTTTTTAAATTTTGTACTCCTCGTGGACAAGCCGACGCGTGAAATTTGAATTTTTGAGTTACAAATCAGCTAAAAACTTGATGTTTCGGTGTAAAACCGCTAGGAATCATTAAAAACTAACATTTCAAAAACATATTTAAGATTTTATGTTTTGTACTCCTCGTGGACAAGTCAACGTTTAAATTTTGAACTTTCGGGTTAATTACAACTTAATACTTGATTTTTCTGTGTAAAATCGCTAGGAATCAGGAAAAATCGAATTTTCTAAGAAAAAGTAGATAATTGAAGATTTTGAATTTTGTACTCCTGGTGGACAAGTCGACGCTCGAAATTTGAATGTTTGAG</canonical>
            <polymorphic>AAATCTTAATACAGACAACATGATGACGTGTGACATAAAATCAATAAAATGTCTTCTAATTTTTTTCCCAGGGACCAAATCAACCAGAAGAATGTCCTGTCCCACTGTTCTCTTTTTTCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTTTGTGGGACCGGGGTAAGTTTCATTTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAKACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGCGGATGGTTTTGATCGTTTTTAAATTTTGTACTCCTCGTGGACAAGCCGACGCGTGAAATTTGAATTTTTGAGTTACAAATCAGCTAAAAACTTGATGTTTCGGTGTAAAACCGCTAGGAATCATTAAAAACTAACATTTCAAAAACATATTTAAGATTTTATGTTTTGTACTCCTCGTGGACAAGTCAACGTTTAAATTTTGAACTTTCGGGTTAATTACAACTTAATACTTGATTTTTCTGTGTAAAATCGCTAGGAATCAGGAAAAATCGAATTTTCTAAGAAAAAGTAGATAATTGAAGATTTTGAATTTTGTACTCCTGGTGGACAAGTCGACGCTCGAAATTTGAATGTTTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATGGGATTATCTATTTATTTATGG</pcr_primer_p1>
		<pcr_primer_p2>GCTTGGTCGAATTTCAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGC</canonical_amplicon>
		<polymorphic_amplicon>TTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAKACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34341</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>278397</contig_pos>
        <strand></strand>
        <context>gaaaaaaaaa[A/C]cyyttttttg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAA</left_flank>
        <right_flank>CTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAAATCAACCAGAAGAATGTCCTGTCCCACTGTTCTCTTTTTTCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTTTGTGGGACCGGGGTAAGTTTCATTTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGCGGATGGTTTTGATCGTTTTTAAATTTTGTACTCCTCGTGGACAAGCCGACGCGTGAAATTTGAATTTTTGAGTTACAAATCAGCTAAAAACTTGATGTTTCGGTGTAAAACCGCTAGGAATCATTAAAAACTAACATTTCAAAAACATATTTAAGATTTTATGTTTTGTACTCCTCGTGGACAAGTCAACGTTTAAATTTTGAACTTTCGGGTTAATTACAACTTAATACTTGATTTTTCTGTGTAAAATCGCTAGGAATCAGGAAAAATCGAATTTTCTAAGAAAAAGTAGATAATTGAAGATTTTGAATTTTGTACTCCTGGTGGACAAGTCGACGCTCGAAATTTGAATGTTTGAGTTACAAAACATTTGAAAGCTTGATTTTTCGGTGTAAAATCTCTAGGAATCATAAAAAAAACTAAAATTTCAAA</canonical>
            <polymorphic>ACCAAATCAACCAGAAGAATGTCCTGTCCCACTGTTCTCTTTTTTCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTTTGTGGGACCGGGGTAAGTTTCATTTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAMCTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGCGGATGGTTTTGATCGTTTTTAAATTTTGTACTCCTCGTGGACAAGCCGACGCGTGAAATTTGAATTTTTGAGTTACAAATCAGCTAAAAACTTGATGTTTCGGTGTAAAACCGCTAGGAATCATTAAAAACTAACATTTCAAAAACATATTTAAGATTTTATGTTTTGTACTCCTCGTGGACAAGTCAACGTTTAAATTTTGAACTTTCGGGTTAATTACAACTTAATACTTGATTTTTCTGTGTAAAATCGCTAGGAATCAGGAAAAATCGAATTTTCTAAGAAAAAGTAGATAATTGAAGATTTTGAATTTTGTACTCCTGGTGGACAAGTCGACGCTCGAAATTTGAATGTTTGAGTTACAAAACATTTGAAAGCTTGATTTTTCGGTGTAAAATCTCTAGGAATCATAAAAAAAACTAAAATTTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATGGGATTATCTATTTATTTATGG</pcr_primer_p1>
		<pcr_primer_p2>GCTTGGTCGAATTTCAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGC</canonical_amplicon>
		<polymorphic_amplicon>TTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAMCTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34342</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>278399</contig_pos>
        <strand></strand>
        <context>aaaaaaaamc[T/C]yttttttggt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAAC</left_flank>
        <right_flank>TTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTAT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATCAACCAGAAGAATGTCCTGTCCCACTGTTCTCTTTTTTCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTTTGTGGGACCGGGGTAAGTTTCATTTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGCGGATGGTTTTGATCGTTTTTAAATTTTGTACTCCTCGTGGACAAGCCGACGCGTGAAATTTGAATTTTTGAGTTACAAATCAGCTAAAAACTTGATGTTTCGGTGTAAAACCGCTAGGAATCATTAAAAACTAACATTTCAAAAACATATTTAAGATTTTATGTTTTGTACTCCTCGTGGACAAGTCAACGTTTAAATTTTGAACTTTCGGGTTAATTACAACTTAATACTTGATTTTTCTGTGTAAAATCGCTAGGAATCAGGAAAAATCGAATTTTCTAAGAAAAAGTAGATAATTGAAGATTTTGAATTTTGTACTCCTGGTGGACAAGTCGACGCTCGAAATTTGAATGTTTGAGTTACAAAACATTTGAAAGCTTGATTTTTCGGTGTAAAATCTCTAGGAATCATAAAAAAAACTAAAATTTCAAAAA</canonical>
            <polymorphic>CAAATCAACCAGAAGAATGTCCTGTCCCACTGTTCTCTTTTTTCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTTTGTGGGACCGGGGTAAGTTTCATTTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACYTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGCGGATGGTTTTGATCGTTTTTAAATTTTGTACTCCTCGTGGACAAGCCGACGCGTGAAATTTGAATTTTTGAGTTACAAATCAGCTAAAAACTTGATGTTTCGGTGTAAAACCGCTAGGAATCATTAAAAACTAACATTTCAAAAACATATTTAAGATTTTATGTTTTGTACTCCTCGTGGACAAGTCAACGTTTAAATTTTGAACTTTCGGGTTAATTACAACTTAATACTTGATTTTTCTGTGTAAAATCGCTAGGAATCAGGAAAAATCGAATTTTCTAAGAAAAAGTAGATAATTGAAGATTTTGAATTTTGTACTCCTGGTGGACAAGTCGACGCTCGAAATTTGAATGTTTGAGTTACAAAACATTTGAAAGCTTGATTTTTCGGTGTAAAATCTCTAGGAATCATAAAAAAAACTAAAATTTCAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATGGGATTATCTATTTATTTATGG</pcr_primer_p1>
		<pcr_primer_p2>GCTTGGTCGAATTTCAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGC</canonical_amplicon>
		<polymorphic_amplicon>TTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACYTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34343</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>278400</contig_pos>
        <strand></strand>
        <context>aaaaaaamcy[T/C]ttttttggtt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACT</left_flank>
        <right_flank>TTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCAACCAGAAGAATGTCCTGTCCCACTGTTCTCTTTTTTCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTTTGTGGGACCGGGGTAAGTTTCATTTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGCGGATGGTTTTGATCGTTTTTAAATTTTGTACTCCTCGTGGACAAGCCGACGCGTGAAATTTGAATTTTTGAGTTACAAATCAGCTAAAAACTTGATGTTTCGGTGTAAAACCGCTAGGAATCATTAAAAACTAACATTTCAAAAACATATTTAAGATTTTATGTTTTGTACTCCTCGTGGACAAGTCAACGTTTAAATTTTGAACTTTCGGGTTAATTACAACTTAATACTTGATTTTTCTGTGTAAAATCGCTAGGAATCAGGAAAAATCGAATTTTCTAAGAAAAAGTAGATAATTGAAGATTTTGAATTTTGTACTCCTGGTGGACAAGTCGACGCTCGAAATTTGAATGTTTGAGTTACAAAACATTTGAAAGCTTGATTTTTCGGTGTAAAATCTCTAGGAATCATAAAAAAAACTAAAATTTCAAAAAA</canonical>
            <polymorphic>AAATCAACCAGAAGAATGTCCTGTCCCACTGTTCTCTTTTTTCTCCTTCTTTTCTCTTCCATACCTATTATTGATTTTTCGTCAATTTTGAAGTTTTTTCGAATTCCGATCACCTAATCACTTTATGTTTACAGGTAACCATGACCACGGCCAGTTCAAAAATCTACATTGCAAGTTATCCGAAATCGGTAACAGAAAATGTGCTGTGGAGCATTTTTGAACAGTTTGGAGAGGTCAAAAATATATTTTTGAAGGGGGGAGGCAAGAATTTTGGAATCATGGATTTTGTGGGACCGGGGTAAGTTTCATTTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTYTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGCGGATGGTTTTGATCGTTTTTAAATTTTGTACTCCTCGTGGACAAGCCGACGCGTGAAATTTGAATTTTTGAGTTACAAATCAGCTAAAAACTTGATGTTTCGGTGTAAAACCGCTAGGAATCATTAAAAACTAACATTTCAAAAACATATTTAAGATTTTATGTTTTGTACTCCTCGTGGACAAGTCAACGTTTAAATTTTGAACTTTCGGGTTAATTACAACTTAATACTTGATTTTTCTGTGTAAAATCGCTAGGAATCAGGAAAAATCGAATTTTCTAAGAAAAAGTAGATAATTGAAGATTTTGAATTTTGTACTCCTGGTGGACAAGTCGACGCTCGAAATTTGAATGTTTGAGTTACAAAACATTTGAAAGCTTGATTTTTCGGTGTAAAATCTCTAGGAATCATAAAAAAAACTAAAATTTCAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATGGGATTATCTATTTATTTATGG</pcr_primer_p1>
		<pcr_primer_p2>GCTTGGTCGAATTTCAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTTTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGC</canonical_amplicon>
		<polymorphic_amplicon>TTATGGGATTATCTATTTATTTATGGGATTATATACGTATTTTTAGGGGATTTTTGGTCATGTTGCCTATGATGGTATCTGCGGGTCTTTGAAAATTTTGAAGAGTCTAAAACAGACCCAGACTAGAAACTTTGCATTCATAGACTTTTTCGAAGACTCCTACTTTTGGCGAATTCTGAAAAAAAAAACTYTTTTTTGGTTCGTTTTTGTACTAAAATGTGAAAAAAGTCAAATAATTATTGAAATTCGACCAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34344</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>321722</contig_pos>
        <strand></strand>
        <context>catgtcgacg[T/C]gcgaaattcg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAACAAATTTGAAGATTTCATGTTTTGTACTCCTCGTGGACATGTCGACG</left_flank>
        <right_flank>GCGAAATTCGAATTTTTGGGTTACAAAGCGACTTGAAACTCAATTTCTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTTTTTAAAATTTTCTAGTGTTTCAGCTTTTTGCCGATTCCTGAAAGACCCAATTTTCCGTCTTTTCGAATCACTTTGAAAGTTTTTTAGGATTTTCGAATTTTAGGATTTTTCAAATTTGTAGGATTTTTTTGAAGCATCAGGAATGTTAGGATCTTTTGGAATTTTTCAAGTTTTCAAATTTTTCCAAAAATTCCTCGAATTCCAAAAAGCCTGAATTTCCTGAAACTCCAAAAAAGTCTTTTCAATTTGAAAAGTCCGAAAATTCGAAAAACCTAAAACAATGACTAAAAACCATTGAAATTCGACCAACCGGGGGTTTTGGGTTTTGTACTCCTCGTGGACAAGTTGACGCGTGAAATTTGAATTTTTGGGTTACAAAGCAGCTGAAAACTCGGTGTTTTGCTGGAAAATCACTTGGAATCATAAAAAATCGAATTTTTCAAAAACAAATTTGAAGATTTCATGTTTTGTACTCCTCGTGGACATGTCGACGTGCGAAATTCGAATTTTTGGGTTACAAAGCGACTTGAAACTCAATTTCTTGCGATAAAATCGCTAGGAAACATGAAAAGTTGAAAAAAAACAATTTTCAATCGTGTTTGTACTGAACATGTGAAAAACGGCATGGCATTTCCAATCTAGGTCTGTTTTACACCCTCCAAAATTTTCAAAGAGCTCCAGACTCCTGAAAAATGGTCAAATTTTCCAAAAATCATTTTATTAACCGGTACTGCATTTTCCAGATGACTCCGTAAAGACTGGAGACTTGGCTCCACCCTCCTGGAAGTCAAAATTCATTGCCAAGTATGGGACGGTCATCAAATTCGCCTCACGCGCAATCCACGTCTTCCAGAGGCAAAATAACGTAGATCAAATCGTCTTCTCAATTTTCGCATCTGAATACCGTAACCTTAGGAAGACATGGATGGTAATTGACTGTCTGGATAGCATCAAGATGTTCGAGCCAGTCTCCCTCAGGACTAAAGTCTATCAG</canonical>
            <polymorphic>GAATTTTTTAAAATTTTCTAGTGTTTCAGCTTTTTGCCGATTCCTGAAAGACCCAATTTTCCGTCTTTTCGAATCACTTTGAAAGTTTTTTAGGATTTTCGAATTTTAGGATTTTTCAAATTTGTAGGATTTTTTTGAAGCATCAGGAATGTTAGGATCTTTTGGAATTTTTCAAGTTTTCAAATTTTTCCAAAAATTCCTCGAATTCCAAAAAGCCTGAATTTCCTGAAACTCCAAAAAAGTCTTTTCAATTTGAAAAGTCCGAAAATTCGAAAAACCTAAAACAATGACTAAAAACCATTGAAATTCGACCAACCGGGGGTTTTGGGTTTTGTACTCCTCGTGGACAAGTTGACGCGTGAAATTTGAATTTTTGGGTTACAAAGCAGCTGAAAACTCGGTGTTTTGCTGGAAAATCACTTGGAATCATAAAAAATCGAATTTTTCAAAAACAAATTTGAAGATTTCATGTTTTGTACTCCTCGTGGACATGTCGACGYGCGAAATTCGAATTTTTGGGTTACAAAGCGACTTGAAACTCAATTTCTTGCGATAAAATCGCTAGGAAACATGAAAAGTTGAAAAAAAACAATTTTCAATCGTGTTTGTACTGAACATGTGAAAAACGGCATGGCATTTCCAATCTAGGTCTGTTTTACACCCTCCAAAATTTTCAAAGAGCTCCAGACTCCTGAAAAATGGTCAAATTTTCCAAAAATCATTTTATTAACCGGTACTGCATTTTCCAGATGACTCCGTAAAGACTGGAGACTTGGCTCCACCCTCCTGGAAGTCAAAATTCATTGCCAAGTATGGGACGGTCATCAAATTCGCCTCACGCGCAATCCACGTCTTCCAGAGGCAAAATAACGTAGATCAAATCGTCTTCTCAATTTTCGCATCTGAATACCGTAACCTTAGGAAGACATGGATGGTAATTGACTGTCTGGATAGCATCAAGATGTTCGAGCCAGTCTCCCTCAGGACTAAAGTCTATCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>269 151 121 103 68 57 53 42 39 23 17 16 16 14 11</canonical_bands>
                <polymorphic_bands>269 151 121 117 68 57 53 42 39 23 17 16 16 11</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>497 352 130 21</canonical_bands>
                <polymorphic_bands>849 130 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTACAAAGCAGCTGAAAACTC</pcr_primer_p1>
		<pcr_primer_p2>AGTACAAACACGATTGAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>GTTACAAAGCAGCTGAAAACTCGGTGTTTTGCTGGAAAATCACTTGGAATCATAAAAAATCGAATTTTTCAAAAACAAATTTGAAGATTTCATGTTTTGTACTCCTCGTGGACATGTCGACGTGCGAAATTCGAATTTTTGGGTTACAAAGCGACTTGAAACTCAATTTCTTGCGATAAAATCGCTAGGAAACATGAAAAGTTGAAAAAAAACAATTTTCAATCGTGTTTGTACT</canonical_amplicon>
		<polymorphic_amplicon>GTTACAAAGCAGCTGAAAACTCGGTGTTTTGCTGGAAAATCACTTGGAATCATAAAAAATCGAATTTTTCAAAAACAAATTTGAAGATTTCATGTTTTGTACTCCTCGTGGACATGTCGACGYGCGAAATTCGAATTTTTGGGTTACAAAGCGACTTGAAACTCAATTTCTTGCGATAAAATCGCTAGGAAACATGAAAAGTTGAAAAAAAACAATTTTCAATCGTGTTTGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34345</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>321862</contig_pos>
        <strand></strand>
        <context>CATGGCAttt[C/T]caatctakgt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATTTTCAATCGTGTTTGTACTGAACATGTGAAAAACGGCATGGCATTT</left_flank>
        <right_flank>CAATCTAGGTCTGTTTTACACCCTCCAAAATTTTCAAAGAGCTCCAGACT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCAGGAATGTTAGGATCTTTTGGAATTTTTCAAGTTTTCAAATTTTTCCAAAAATTCCTCGAATTCCAAAAAGCCTGAATTTCCTGAAACTCCAAAAAAGTCTTTTCAATTTGAAAAGTCCGAAAATTCGAAAAACCTAAAACAATGACTAAAAACCATTGAAATTCGACCAACCGGGGGTTTTGGGTTTTGTACTCCTCGTGGACAAGTTGACGCGTGAAATTTGAATTTTTGGGTTACAAAGCAGCTGAAAACTCGGTGTTTTGCTGGAAAATCACTTGGAATCATAAAAAATCGAATTTTTCAAAAACAAATTTGAAGATTTCATGTTTTGTACTCCTCGTGGACATGTCGACGTGCGAAATTCGAATTTTTGGGTTACAAAGCGACTTGAAACTCAATTTCTTGCGATAAAATCGCTAGGAAACATGAAAAGTTGAAAAAAAACAATTTTCAATCGTGTTTGTACTGAACATGTGAAAAACGGCATGGCATTTCCAATCTAGGTCTGTTTTACACCCTCCAAAATTTTCAAAGAGCTCCAGACTCCTGAAAAATGGTCAAATTTTCCAAAAATCATTTTATTAACCGGTACTGCATTTTCCAGATGACTCCGTAAAGACTGGAGACTTGGCTCCACCCTCCTGGAAGTCAAAATTCATTGCCAAGTATGGGACGGTCATCAAATTCGCCTCACGCGCAATCCACGTCTTCCAGAGGCAAAATAACGTAGATCAAATCGTCTTCTCAATTTTCGCATCTGAATACCGTAACCTTAGGAAGACATGGATGGTAATTGACTGTCTGGATAGCATCAAGATGTTCGAGCCAGTCTCCCTCAGGACTAAAGTCTATCAGGAGTTGGTTTTGATCTACTTCGATTTGGCAAGAAATATCGGACTATCTCATAGCTACCTCTGGGCGGATCCTCCGATCCAAGGGGACAACTACATTTTCCCTGTCAAGCCAGCTAATCAGCCATCTCCAACTCCAACGAT</canonical>
            <polymorphic>CATCAGGAATGTTAGGATCTTTTGGAATTTTTCAAGTTTTCAAATTTTTCCAAAAATTCCTCGAATTCCAAAAAGCCTGAATTTCCTGAAACTCCAAAAAAGTCTTTTCAATTTGAAAAGTCCGAAAATTCGAAAAACCTAAAACAATGACTAAAAACCATTGAAATTCGACCAACCGGGGGTTTTGGGTTTTGTACTCCTCGTGGACAAGTTGACGCGTGAAATTTGAATTTTTGGGTTACAAAGCAGCTGAAAACTCGGTGTTTTGCTGGAAAATCACTTGGAATCATAAAAAATCGAATTTTTCAAAAACAAATTTGAAGATTTCATGTTTTGTACTCCTCGTGGACATGTCGACGTGCGAAATTCGAATTTTTGGGTTACAAAGCGACTTGAAACTCAATTTCTTGCGATAAAATCGCTAGGAAACATGAAAAGTTGAAAAAAAACAATTTTCAATCGTGTTTGTACTGAACATGTGAAAAACGGCATGGCATTTYCAATCTAGGTCTGTTTTACACCCTCCAAAATTTTCAAAGAGCTCCAGACTCCTGAAAAATGGTCAAATTTTCCAAAAATCATTTTATTAACCGGTACTGCATTTTCCAGATGACTCCGTAAAGACTGGAGACTTGGCTCCACCCTCCTGGAAGTCAAAATTCATTGCCAAGTATGGGACGGTCATCAAATTCGCCTCACGCGCAATCCACGTCTTCCAGAGGCAAAATAACGTAGATCAAATCGTCTTCTCAATTTTCGCATCTGAATACCGTAACCTTAGGAAGACATGGATGGTAATTGACTGTCTGGATAGCATCAAGATGTTCGAGCCAGTCTCCCTCAGGACTAAAGTCTATCAGGAGTTGGTTTTGATCTACTTCGATTTGGCAAGAAATATCGGACTATCTCATAGCTACCTCTGGGCGGATCCTCCGATCCAAGGGGACAACTACATTTTCCCTGTCAAGCCAGCTAATCAGCCATCTCCAACTCCAACGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGGAAACATGAAAAGTTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TACTTGGCAATGAATTTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAGGAAACATGAAAAGTTGAAAAAAAACAATTTTCAATCGTGTTTGTACTGAACATGTGAAAAACGGCATGGCATTTCCAATCTAGGTCTGTTTTACACCCTCCAAAATTTTCAAAGAGCTCCAGACTCCTGAAAAATGGTCAAATTTTCCAAAAATCATTTTATTAACCGGTACTGCATTTTCCAGATGACTCCGTAAAGACTGGAGACTTGGCTCCACCCTCCTGGAAGTCAAAATTCATTGCCAAGTA</canonical_amplicon>
		<polymorphic_amplicon>TAGGAAACATGAAAAGTTGAAAAAAAACAATTTTCAATCGTGTTTGTACTGAACATGTGAAAAACGGCATGGCATTTYCAATCTAGGTCTGTTTTACACCCTCCAAAATTTTCAAAGAGCTCCAGACTCCTGAAAAATGGTCAAATTTTCCAAAAATCATTTTATTAACCGGTACTGCATTTTCCAGATGACTCCGTAAAGACTGGAGACTTGGCTCCACCCTCCTGGAAGTCAAAATTCATTGCCAAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34346</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>321870</contig_pos>
        <strand></strand>
        <context>ttycaatcta[G/T]gtctgtttta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATCGTGTTTGTACTGAACATGTGAAAAACGGCATGGCATTTCCAATCTA</left_flank>
        <right_flank>GTCTGTTTTACACCCTCCAAAATTTTCAAAGAGCTCCAGACTCCTGAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTTAGGATCTTTTGGAATTTTTCAAGTTTTCAAATTTTTCCAAAAATTCCTCGAATTCCAAAAAGCCTGAATTTCCTGAAACTCCAAAAAAGTCTTTTCAATTTGAAAAGTCCGAAAATTCGAAAAACCTAAAACAATGACTAAAAACCATTGAAATTCGACCAACCGGGGGTTTTGGGTTTTGTACTCCTCGTGGACAAGTTGACGCGTGAAATTTGAATTTTTGGGTTACAAAGCAGCTGAAAACTCGGTGTTTTGCTGGAAAATCACTTGGAATCATAAAAAATCGAATTTTTCAAAAACAAATTTGAAGATTTCATGTTTTGTACTCCTCGTGGACATGTCGACGTGCGAAATTCGAATTTTTGGGTTACAAAGCGACTTGAAACTCAATTTCTTGCGATAAAATCGCTAGGAAACATGAAAAGTTGAAAAAAAACAATTTTCAATCGTGTTTGTACTGAACATGTGAAAAACGGCATGGCATTTCCAATCTAGGTCTGTTTTACACCCTCCAAAATTTTCAAAGAGCTCCAGACTCCTGAAAAATGGTCAAATTTTCCAAAAATCATTTTATTAACCGGTACTGCATTTTCCAGATGACTCCGTAAAGACTGGAGACTTGGCTCCACCCTCCTGGAAGTCAAAATTCATTGCCAAGTATGGGACGGTCATCAAATTCGCCTCACGCGCAATCCACGTCTTCCAGAGGCAAAATAACGTAGATCAAATCGTCTTCTCAATTTTCGCATCTGAATACCGTAACCTTAGGAAGACATGGATGGTAATTGACTGTCTGGATAGCATCAAGATGTTCGAGCCAGTCTCCCTCAGGACTAAAGTCTATCAGGAGTTGGTTTTGATCTACTTCGATTTGGCAAGAAATATCGGACTATCTCATAGCTACCTCTGGGCGGATCCTCCGATCCAAGGGGACAACTACATTTTCCCTGTCAAGCCAGCTAATCAGCCATCTCCAACTCCAACGATGCTCGAAA</canonical>
            <polymorphic>ATGTTAGGATCTTTTGGAATTTTTCAAGTTTTCAAATTTTTCCAAAAATTCCTCGAATTCCAAAAAGCCTGAATTTCCTGAAACTCCAAAAAAGTCTTTTCAATTTGAAAAGTCCGAAAATTCGAAAAACCTAAAACAATGACTAAAAACCATTGAAATTCGACCAACCGGGGGTTTTGGGTTTTGTACTCCTCGTGGACAAGTTGACGCGTGAAATTTGAATTTTTGGGTTACAAAGCAGCTGAAAACTCGGTGTTTTGCTGGAAAATCACTTGGAATCATAAAAAATCGAATTTTTCAAAAACAAATTTGAAGATTTCATGTTTTGTACTCCTCGTGGACATGTCGACGTGCGAAATTCGAATTTTTGGGTTACAAAGCGACTTGAAACTCAATTTCTTGCGATAAAATCGCTAGGAAACATGAAAAGTTGAAAAAAAACAATTTTCAATCGTGTTTGTACTGAACATGTGAAAAACGGCATGGCATTTCCAATCTAKGTCTGTTTTACACCCTCCAAAATTTTCAAAGAGCTCCAGACTCCTGAAAAATGGTCAAATTTTCCAAAAATCATTTTATTAACCGGTACTGCATTTTCCAGATGACTCCGTAAAGACTGGAGACTTGGCTCCACCCTCCTGGAAGTCAAAATTCATTGCCAAGTATGGGACGGTCATCAAATTCGCCTCACGCGCAATCCACGTCTTCCAGAGGCAAAATAACGTAGATCAAATCGTCTTCTCAATTTTCGCATCTGAATACCGTAACCTTAGGAAGACATGGATGGTAATTGACTGTCTGGATAGCATCAAGATGTTCGAGCCAGTCTCCCTCAGGACTAAAGTCTATCAGGAGTTGGTTTTGATCTACTTCGATTTGGCAAGAAATATCGGACTATCTCATAGCTACCTCTGGGCGGATCCTCCGATCCAAGGGGACAACTACATTTTCCCTGTCAAGCCAGCTAATCAGCCATCTCCAACTCCAACGATGCTCGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 414 83</canonical_bands>
                <polymorphic_bands>586 414</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGGAAACATGAAAAGTTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TACTTGGCAATGAATTTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAGGAAACATGAAAAGTTGAAAAAAAACAATTTTCAATCGTGTTTGTACTGAACATGTGAAAAACGGCATGGCATTTCCAATCTAGGTCTGTTTTACACCCTCCAAAATTTTCAAAGAGCTCCAGACTCCTGAAAAATGGTCAAATTTTCCAAAAATCATTTTATTAACCGGTACTGCATTTTCCAGATGACTCCGTAAAGACTGGAGACTTGGCTCCACCCTCCTGGAAGTCAAAATTCATTGCCAAGTA</canonical_amplicon>
		<polymorphic_amplicon>TAGGAAACATGAAAAGTTGAAAAAAAACAATTTTCAATCGTGTTTGTACTGAACATGTGAAAAACGGCATGGCATTTCCAATCTAKGTCTGTTTTACACCCTCCAAAATTTTCAAAGAGCTCCAGACTCCTGAAAAATGGTCAAATTTTCCAAAAATCATTTTATTAACCGGTACTGCATTTTCCAGATGACTCCGTAAAGACTGGAGACTTGGCTCCACCCTCCTGGAAGTCAAAATTCATTGCCAAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34347</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>322111</contig_pos>
        <strand>+</strand>
        <context>AAATCGTCTT[C/T]TCAATTTTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGCGCAATCCACGTCTTCCAGAGGCAAAATAACGTAGATCAAATCGTCTT</left_flank>
        <right_flank>TCAATTTTCGCATCTGAATACCGTAACCTTAGGAAGACATGGATGGTAAT</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAAAACTCGGTGTTTTGCTGGAAAATCACTTGGAATCATAAAAAATCGAATTTTTCAAAAACAAATTTGAAGATTTCATGTTTTGTACTCCTCGTGGACATGTCGACGTGCGAAATTCGAATTTTTGGGTTACAAAGCGACTTGAAACTCAATTTCTTGCGATAAAATCGCTAGGAAACATGAAAAGTTGAAAAAAAACAATTTTCAATCGTGTTTGTACTGAACATGTGAAAAACGGCATGGCATTTCCAATCTAGGTCTGTTTTACACCCTCCAAAATTTTCAAAGAGCTCCAGACTCCTGAAAAATGGTCAAATTTTCCAAAAATCATTTTATTAACCGGTACTGCATTTTCCAGATGACTCCGTAAAGACTGGAGACTTGGCTCCACCCTCCTGGAAGTCAAAATTCATTGCCAAGTATGGGACGGTCATCAAATTCGCCTCACGCGCAATCCACGTCTTCCAGAGGCAAAATAACGTAGATCAAATCGTCTTCTCAATTTTCGCATCTGAATACCGTAACCTTAGGAAGACATGGATGGTAATTGACTGTCTGGATAGCATCAAGATGTTCGAGCCAGTCTCCCTCAGGACTAAAGTCTATCAGGAGTTGGTTTTGATCTACTTCGATTTGGCAAGAAATATCGGACTATCTCATAGCTACCTCTGGGCGGATCCTCCGATCCAAGGGGACAACTACATTTTCCCTGTCAAGCCAGCTAATCAGCCATCTCCAACTCCAACGATGCTCGAAAACTGGTACCTTACAGTGATGGAGAAGGGGAAATCCAACGGCATTGTCAAGGAATTCAGAAGCTTCGCTGAAGAGAAGGAGTTGAAGAAATTCAAAAAGCCAACCGAGATTCCGATCTTCCATAATAGTCTCTGGTCATCTTTGATGGCTGTTTATGATGTGGTTGGAAAGCCTCAGAAGCTTTGGAAATCGCTGTCGGCGGAGTGGGAGAGTCATGGATCGGATAACTGGTTTATTGAGTT</canonical>
            <polymorphic>CTGAAAACTCGGTGTTTTGCTGGAAAATCACTTGGAATCATAAAAAATCGAATTTTTCAAAAACAAATTTGAAGATTTCATGTTTTGTACTCCTCGTGGACATGTCGACGTGCGAAATTCGAATTTTTGGGTTACAAAGCGACTTGAAACTCAATTTCTTGCGATAAAATCGCTAGGAAACATGAAAAGTTGAAAAAAAACAATTTTCAATCGTGTTTGTACTGAACATGTGAAAAACGGCATGGCATTTCCAATCTAGGTCTGTTTTACACCCTCCAAAATTTTCAAAGAGCTCCAGACTCCTGAAAAATGGTCAAATTTTCCAAAAATCATTTTATTAACCGGTACTGCATTTTCCAGATGACTCCGTAAAGACTGGAGACTTGGCTCCACCCTCCTGGAAGTCAAAATTCATTGCCAAGTATGGGACGGTCATCAAATTCGCCTCACGCGCAATCCACGTCTTCCAGAGGCAAAATAACGTAGATCAAATCGTCTTYTCAATTTTCGCATCTGAATACCGTAACCTTAGGAAGACATGGATGGTAATTGACTGTCTGGATAGCATCAAGATGTTCGAGCCAGTCTCCCTCAGGACTAAAGTCTATCAGGAGTTGGTTTTGATCTACTTCGATTTGGCAAGAAATATCGGACTATCTCATAGCTACCTCTGGGCGGATCCTCCGATCCAAGGGGACAACTACATTTTCCCTGTCAAGCCAGCTAATCAGCCATCTCCAACTCCAACGATGCTCGAAAACTGGTACCTTACAGTGATGGAGAAGGGGAAATCCAACGGCATTGTCAAGGAATTCAGAAGCTTCGCTGAAGAGAAGGAGTTGAAGAAATTCAAAAAGCCAACCGAGATTCCGATCTTCCATAATAGTCTCTGGTCATCTTTGATGGCTGTTTATGATGTGGTTGGAAAGCCTCAGAAGCTTTGGAAATCGCTGTCGGCGGAGTGGGAGAGTCATGGATCGGATAACTGGTTTATTGAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCTGGAAGTCAAAATTCAT</pcr_primer_p1>
		<pcr_primer_p2>ATCGAAGTAGATCAAAACCAACT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CTCCTGGAAGTCAAAATTCATTGCCAAGTATGGGACGGTCATCAAATTCGCCTCACGCGCAATCCACGTCTTCCAGAGGCAAAATAACGTAGATCAAATCGTCTTCTCAATTTTCGCATCTGAATACCGTAACCTTAGGAAGACATGGATGGTAATTGACTGTCTGGATAGCATCAAGATGTTCGAGCCAGTCTCCCTCAGGACTAAAGTCTATCAGGAGTTGGTTTTGATCTACTTCGAT</canonical_amplicon>
		<polymorphic_amplicon>CTCCTGGAAGTCAAAATTCATTGCCAAGTATGGGACGGTCATCAAATTCGCCTCACGCGCAATCCACGTCTTCCAGAGGCAAAATAACGTAGATCAAATCGTCTTYTCAATTTTCGCATCTGAATACCGTAACCTTAGGAAGACATGGATGGTAATTGACTGTCTGGATAGCATCAAGATGTTCGAGCCAGTCTCCCTCAGGACTAAAGTCTATCAGGAGTTGGTTTTGATCTACTTCGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34348</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>322140</contig_pos>
        <strand>+</strand>
        <context>TACCGTAACC[C/T]TAGGAAGACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAACGTAGATCAAATCGTCTTCTCAATTTTCGCATCTGAATACCGTAACC</left_flank>
        <right_flank>TAGGAAGACATGGATGGTAATTGACTGTCTGGATAGCATCAAGATGTTCG</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTGGAATCATAAAAAATCGAATTTTTCAAAAACAAATTTGAAGATTTCATGTTTTGTACTCCTCGTGGACATGTCGACGTGCGAAATTCGAATTTTTGGGTTACAAAGCGACTTGAAACTCAATTTCTTGCGATAAAATCGCTAGGAAACATGAAAAGTTGAAAAAAAACAATTTTCAATCGTGTTTGTACTGAACATGTGAAAAACGGCATGGCATTTCCAATCTAGGTCTGTTTTACACCCTCCAAAATTTTCAAAGAGCTCCAGACTCCTGAAAAATGGTCAAATTTTCCAAAAATCATTTTATTAACCGGTACTGCATTTTCCAGATGACTCCGTAAAGACTGGAGACTTGGCTCCACCCTCCTGGAAGTCAAAATTCATTGCCAAGTATGGGACGGTCATCAAATTCGCCTCACGCGCAATCCACGTCTTCCAGAGGCAAAATAACGTAGATCAAATCGTCTTCTCAATTTTCGCATCTGAATACCGTAACCTTAGGAAGACATGGATGGTAATTGACTGTCTGGATAGCATCAAGATGTTCGAGCCAGTCTCCCTCAGGACTAAAGTCTATCAGGAGTTGGTTTTGATCTACTTCGATTTGGCAAGAAATATCGGACTATCTCATAGCTACCTCTGGGCGGATCCTCCGATCCAAGGGGACAACTACATTTTCCCTGTCAAGCCAGCTAATCAGCCATCTCCAACTCCAACGATGCTCGAAAACTGGTACCTTACAGTGATGGAGAAGGGGAAATCCAACGGCATTGTCAAGGAATTCAGAAGCTTCGCTGAAGAGAAGGAGTTGAAGAAATTCAAAAAGCCAACCGAGATTCCGATCTTCCATAATAGTCTCTGGTCATCTTTGATGGCTGTTTATGATGTGGTTGGAAAGCCTCAGAAGCTTTGGAAATCGCTGTCGGCGGAGTGGGAGAGTCATGGATCGGATAACTGGTTTATTGAGTTCAATGAGGTTGAGAAGGATGAGCAATCGG</canonical>
            <polymorphic>ACTTGGAATCATAAAAAATCGAATTTTTCAAAAACAAATTTGAAGATTTCATGTTTTGTACTCCTCGTGGACATGTCGACGTGCGAAATTCGAATTTTTGGGTTACAAAGCGACTTGAAACTCAATTTCTTGCGATAAAATCGCTAGGAAACATGAAAAGTTGAAAAAAAACAATTTTCAATCGTGTTTGTACTGAACATGTGAAAAACGGCATGGCATTTCCAATCTAGGTCTGTTTTACACCCTCCAAAATTTTCAAAGAGCTCCAGACTCCTGAAAAATGGTCAAATTTTCCAAAAATCATTTTATTAACCGGTACTGCATTTTCCAGATGACTCCGTAAAGACTGGAGACTTGGCTCCACCCTCCTGGAAGTCAAAATTCATTGCCAAGTATGGGACGGTCATCAAATTCGCCTCACGCGCAATCCACGTCTTCCAGAGGCAAAATAACGTAGATCAAATCGTCTTCTCAATTTTCGCATCTGAATACCGTAACCYTAGGAAGACATGGATGGTAATTGACTGTCTGGATAGCATCAAGATGTTCGAGCCAGTCTCCCTCAGGACTAAAGTCTATCAGGAGTTGGTTTTGATCTACTTCGATTTGGCAAGAAATATCGGACTATCTCATAGCTACCTCTGGGCGGATCCTCCGATCCAAGGGGACAACTACATTTTCCCTGTCAAGCCAGCTAATCAGCCATCTCCAACTCCAACGATGCTCGAAAACTGGTACCTTACAGTGATGGAGAAGGGGAAATCCAACGGCATTGTCAAGGAATTCAGAAGCTTCGCTGAAGAGAAGGAGTTGAAGAAATTCAAAAAGCCAACCGAGATTCCGATCTTCCATAATAGTCTCTGGTCATCTTTGATGGCTGTTTATGATGTGGTTGGAAAGCCTCAGAAGCTTTGGAAATCGCTGTCGGCGGAGTGGGAGAGTCATGGATCGGATAACTGGTTTATTGAGTTCAATGAGGTTGAGAAGGATGAGCAATCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCTNAGG</site>
                <isoschizomers>
                    <enzyme>AocI</enzyme>
                    <enzyme>AxyI</enzyme>
                    <enzyme>Bse21I</enzyme>
                    <enzyme>Bsu36I</enzyme>
                    <enzyme>CvnI</enzyme>
                    <enzyme>Eco81I</enzyme>
                    <enzyme>SauI</enzyme>
                </isoschizomers>
                <canonical_bands>499 438 63</canonical_bands>
                <polymorphic_bands>562 438</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>499 340 98 63</canonical_bands>
                <polymorphic_bands>562 340 98</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAATAACGTAGATCAAATCGT</pcr_primer_p1>
		<pcr_primer_p2>TTGACAGGGAAAATGTAGTTGT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CAAAATAACGTAGATCAAATCGTCTTCTCAATTTTCGCATCTGAATACCGTAACCTTAGGAAGACATGGATGGTAATTGACTGTCTGGATAGCATCAAGATGTTCGAGCCAGTCTCCCTCAGGACTAAAGTCTATCAGGAGTTGGTTTTGATCTACTTCGATTTGGCAAGAAATATCGGACTATCTCATAGCTACCTCTGGGCGGATCCTCCGATCCAAGGGGACAACTACATTTTCCCTGTCAA</canonical_amplicon>
		<polymorphic_amplicon>CAAAATAACGTAGATCAAATCGTCTTCTCAATTTTCGCATCTGAATACCGTAACCYTAGGAAGACATGGATGGTAATTGACTGTCTGGATAGCATCAAGATGTTCGAGCCAGTCTCCCTCAGGACTAAAGTCTATCAGGAGTTGGTTTTGATCTACTTCGATTTGGCAAGAAATATCGGACTATCTCATAGCTACCTCTGGGCGGATCCTCCGATCCAAGGGGACAACTACATTTTCCCTGTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34349</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>322168</contig_pos>
        <strand>+</strand>
        <context>TAATTGACTG[C/T]CTGGATAGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCGCATCTGAATACCGTAACCTTAGGAAGACATGGATGGTAATTGACTG</left_flank>
        <right_flank>CTGGATAGCATCAAGATGTTCGAGCCAGTCTCCCTCAGGACTAAAGTCTA</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAAACAAATTTGAAGATTTCATGTTTTGTACTCCTCGTGGACATGTCGACGTGCGAAATTCGAATTTTTGGGTTACAAAGCGACTTGAAACTCAATTTCTTGCGATAAAATCGCTAGGAAACATGAAAAGTTGAAAAAAAACAATTTTCAATCGTGTTTGTACTGAACATGTGAAAAACGGCATGGCATTTCCAATCTAGGTCTGTTTTACACCCTCCAAAATTTTCAAAGAGCTCCAGACTCCTGAAAAATGGTCAAATTTTCCAAAAATCATTTTATTAACCGGTACTGCATTTTCCAGATGACTCCGTAAAGACTGGAGACTTGGCTCCACCCTCCTGGAAGTCAAAATTCATTGCCAAGTATGGGACGGTCATCAAATTCGCCTCACGCGCAATCCACGTCTTCCAGAGGCAAAATAACGTAGATCAAATCGTCTTCTCAATTTTCGCATCTGAATACCGTAACCTTAGGAAGACATGGATGGTAATTGACTGTCTGGATAGCATCAAGATGTTCGAGCCAGTCTCCCTCAGGACTAAAGTCTATCAGGAGTTGGTTTTGATCTACTTCGATTTGGCAAGAAATATCGGACTATCTCATAGCTACCTCTGGGCGGATCCTCCGATCCAAGGGGACAACTACATTTTCCCTGTCAAGCCAGCTAATCAGCCATCTCCAACTCCAACGATGCTCGAAAACTGGTACCTTACAGTGATGGAGAAGGGGAAATCCAACGGCATTGTCAAGGAATTCAGAAGCTTCGCTGAAGAGAAGGAGTTGAAGAAATTCAAAAAGCCAACCGAGATTCCGATCTTCCATAATAGTCTCTGGTCATCTTTGATGGCTGTTTATGATGTGGTTGGAAAGCCTCAGAAGCTTTGGAAATCGCTGTCGGCGGAGTGGGAGAGTCATGGATCGGATAACTGGTTTATTGAGTTCAATGAGGTTGAGAAGGATGAGCAATCGGAGGGGATGTGTCAGGAGAGACTTCATGA</canonical>
            <polymorphic>CAAAAACAAATTTGAAGATTTCATGTTTTGTACTCCTCGTGGACATGTCGACGTGCGAAATTCGAATTTTTGGGTTACAAAGCGACTTGAAACTCAATTTCTTGCGATAAAATCGCTAGGAAACATGAAAAGTTGAAAAAAAACAATTTTCAATCGTGTTTGTACTGAACATGTGAAAAACGGCATGGCATTTCCAATCTAGGTCTGTTTTACACCCTCCAAAATTTTCAAAGAGCTCCAGACTCCTGAAAAATGGTCAAATTTTCCAAAAATCATTTTATTAACCGGTACTGCATTTTCCAGATGACTCCGTAAAGACTGGAGACTTGGCTCCACCCTCCTGGAAGTCAAAATTCATTGCCAAGTATGGGACGGTCATCAAATTCGCCTCACGCGCAATCCACGTCTTCCAGAGGCAAAATAACGTAGATCAAATCGTCTTCTCAATTTTCGCATCTGAATACCGTAACCTTAGGAAGACATGGATGGTAATTGACTGYCTGGATAGCATCAAGATGTTCGAGCCAGTCTCCCTCAGGACTAAAGTCTATCAGGAGTTGGTTTTGATCTACTTCGATTTGGCAAGAAATATCGGACTATCTCATAGCTACCTCTGGGCGGATCCTCCGATCCAAGGGGACAACTACATTTTCCCTGTCAAGCCAGCTAATCAGCCATCTCCAACTCCAACGATGCTCGAAAACTGGTACCTTACAGTGATGGAGAAGGGGAAATCCAACGGCATTGTCAAGGAATTCAGAAGCTTCGCTGAAGAGAAGGAGTTGAAGAAATTCAAAAAGCCAACCGAGATTCCGATCTTCCATAATAGTCTCTGGTCATCTTTGATGGCTGTTTATGATGTGGTTGGAAAGCCTCAGAAGCTTTGGAAATCGCTGTCGGCGGAGTGGGAGAGTCATGGATCGGATAACTGGTTTATTGAGTTCAATGAGGTTGAGAAGGATGAGCAATCGGAGGGGATGTGTCAGGAGAGACTTCATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>374 284 218 91 33</canonical_bands>
                <polymorphic_bands>374 284 251 91</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>432 238 110 91 55 24 16 12 11 7 4</canonical_bands>
                <polymorphic_bands>432 238 110 102 55 24 16 12 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAATAACGTAGATCAAATCGT</pcr_primer_p1>
		<pcr_primer_p2>TTGACAGGGAAAATGTAGTTGT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CAAAATAACGTAGATCAAATCGTCTTCTCAATTTTCGCATCTGAATACCGTAACCTTAGGAAGACATGGATGGTAATTGACTGTCTGGATAGCATCAAGATGTTCGAGCCAGTCTCCCTCAGGACTAAAGTCTATCAGGAGTTGGTTTTGATCTACTTCGATTTGGCAAGAAATATCGGACTATCTCATAGCTACCTCTGGGCGGATCCTCCGATCCAAGGGGACAACTACATTTTCCCTGTCAA</canonical_amplicon>
		<polymorphic_amplicon>CAAAATAACGTAGATCAAATCGTCTTCTCAATTTTCGCATCTGAATACCGTAACCTTAGGAAGACATGGATGGTAATTGACTGYCTGGATAGCATCAAGATGTTCGAGCCAGTCTCCCTCAGGACTAAAGTCTATCAGGAGTTGGTTTTGATCTACTTCGATTTGGCAAGAAATATCGGACTATCTCATAGCTACCTCTGGGCGGATCCTCCGATCCAAGGGGACAACTACATTTTCCCTGTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34350</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>322190</contig_pos>
        <strand>+</strand>
        <context>CAAGATGTTC[C/G]AGCCAGYCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTAGGAAGACATGGATGGTAATTGACTGTCTGGATAGCATCAAGATGTTC</left_flank>
        <right_flank>AGCCAGTCTCCCTCAGGACTAAAGTCTATCAGGAGTTGGTTTTGATCTAC</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTTTTGTACTCCTCGTGGACATGTCGACGTGCGAAATTCGAATTTTTGGGTTACAAAGCGACTTGAAACTCAATTTCTTGCGATAAAATCGCTAGGAAACATGAAAAGTTGAAAAAAAACAATTTTCAATCGTGTTTGTACTGAACATGTGAAAAACGGCATGGCATTTCCAATCTAGGTCTGTTTTACACCCTCCAAAATTTTCAAAGAGCTCCAGACTCCTGAAAAATGGTCAAATTTTCCAAAAATCATTTTATTAACCGGTACTGCATTTTCCAGATGACTCCGTAAAGACTGGAGACTTGGCTCCACCCTCCTGGAAGTCAAAATTCATTGCCAAGTATGGGACGGTCATCAAATTCGCCTCACGCGCAATCCACGTCTTCCAGAGGCAAAATAACGTAGATCAAATCGTCTTCTCAATTTTCGCATCTGAATACCGTAACCTTAGGAAGACATGGATGGTAATTGACTGTCTGGATAGCATCAAGATGTTCGAGCCAGTCTCCCTCAGGACTAAAGTCTATCAGGAGTTGGTTTTGATCTACTTCGATTTGGCAAGAAATATCGGACTATCTCATAGCTACCTCTGGGCGGATCCTCCGATCCAAGGGGACAACTACATTTTCCCTGTCAAGCCAGCTAATCAGCCATCTCCAACTCCAACGATGCTCGAAAACTGGTACCTTACAGTGATGGAGAAGGGGAAATCCAACGGCATTGTCAAGGAATTCAGAAGCTTCGCTGAAGAGAAGGAGTTGAAGAAATTCAAAAAGCCAACCGAGATTCCGATCTTCCATAATAGTCTCTGGTCATCTTTGATGGCTGTTTATGATGTGGTTGGAAAGCCTCAGAAGCTTTGGAAATCGCTGTCGGCGGAGTGGGAGAGTCATGGATCGGATAACTGGTTTATTGAGTTCAATGAGGTTGAGAAGGATGAGCAATCGGAGGGGATGTGTCAGGAGAGACTTCATGAGATTCTTTTGAAAAAGGAAGAG</canonical>
            <polymorphic>ATGTTTTGTACTCCTCGTGGACATGTCGACGTGCGAAATTCGAATTTTTGGGTTACAAAGCGACTTGAAACTCAATTTCTTGCGATAAAATCGCTAGGAAACATGAAAAGTTGAAAAAAAACAATTTTCAATCGTGTTTGTACTGAACATGTGAAAAACGGCATGGCATTTCCAATCTAGGTCTGTTTTACACCCTCCAAAATTTTCAAAGAGCTCCAGACTCCTGAAAAATGGTCAAATTTTCCAAAAATCATTTTATTAACCGGTACTGCATTTTCCAGATGACTCCGTAAAGACTGGAGACTTGGCTCCACCCTCCTGGAAGTCAAAATTCATTGCCAAGTATGGGACGGTCATCAAATTCGCCTCACGCGCAATCCACGTCTTCCAGAGGCAAAATAACGTAGATCAAATCGTCTTCTCAATTTTCGCATCTGAATACCGTAACCTTAGGAAGACATGGATGGTAATTGACTGTCTGGATAGCATCAAGATGTTCSAGCCAGTCTCCCTCAGGACTAAAGTCTATCAGGAGTTGGTTTTGATCTACTTCGATTTGGCAAGAAATATCGGACTATCTCATAGCTACCTCTGGGCGGATCCTCCGATCCAAGGGGACAACTACATTTTCCCTGTCAAGCCAGCTAATCAGCCATCTCCAACTCCAACGATGCTCGAAAACTGGTACCTTACAGTGATGGAGAAGGGGAAATCCAACGGCATTGTCAAGGAATTCAGAAGCTTCGCTGAAGAGAAGGAGTTGAAGAAATTCAAAAAGCCAACCGAGATTCCGATCTTCCATAATAGTCTCTGGTCATCTTTGATGGCTGTTTATGATGTGGTTGGAAAGCCTCAGAAGCTTTGGAAATCGCTGTCGGCGGAGTGGGAGAGTCATGGATCGGATAACTGGTTTATTGAGTTCAATGAGGTTGAGAAGGATGAGCAATCGGAGGGGATGTGTCAGGAGAGACTTCATGAGATTCTTTTGAAAAAGGAAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>458 324 123 54 27 14</canonical_bands>
                <polymorphic_bands>512 324 123 27 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAATAACGTAGATCAAATCGT</pcr_primer_p1>
		<pcr_primer_p2>TTGACAGGGAAAATGTAGTTGT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CAAAATAACGTAGATCAAATCGTCTTCTCAATTTTCGCATCTGAATACCGTAACCTTAGGAAGACATGGATGGTAATTGACTGTCTGGATAGCATCAAGATGTTCGAGCCAGTCTCCCTCAGGACTAAAGTCTATCAGGAGTTGGTTTTGATCTACTTCGATTTGGCAAGAAATATCGGACTATCTCATAGCTACCTCTGGGCGGATCCTCCGATCCAAGGGGACAACTACATTTTCCCTGTCAA</canonical_amplicon>
		<polymorphic_amplicon>CAAAATAACGTAGATCAAATCGTCTTCTCAATTTTCGCATCTGAATACCGTAACCTTAGGAAGACATGGATGGTAATTGACTGTCTGGATAGCATCAAGATGTTCSAGCCAGTCTCCCTCAGGACTAAAGTCTATCAGGAGTTGGTTTTGATCTACTTCGATTTGGCAAGAAATATCGGACTATCTCATAGCTACCTCTGGGCGGATCCTCCGATCCAAGGGGACAACTACATTTTCCCTGTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34351</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>322197</contig_pos>
        <strand>+</strand>
        <context>TTCSAGCCAG[C/T]CTCCCTCAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACATGGATGGTAATTGACTGTCTGGATAGCATCAAGATGTTCGAGCCAG</left_flank>
        <right_flank>CTCCCTCAGGACTAAAGTCTATCAGGAGTTGGTTTTGATCTACTTCGATT</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACTCCTCGTGGACATGTCGACGTGCGAAATTCGAATTTTTGGGTTACAAAGCGACTTGAAACTCAATTTCTTGCGATAAAATCGCTAGGAAACATGAAAAGTTGAAAAAAAACAATTTTCAATCGTGTTTGTACTGAACATGTGAAAAACGGCATGGCATTTCCAATCTAGGTCTGTTTTACACCCTCCAAAATTTTCAAAGAGCTCCAGACTCCTGAAAAATGGTCAAATTTTCCAAAAATCATTTTATTAACCGGTACTGCATTTTCCAGATGACTCCGTAAAGACTGGAGACTTGGCTCCACCCTCCTGGAAGTCAAAATTCATTGCCAAGTATGGGACGGTCATCAAATTCGCCTCACGCGCAATCCACGTCTTCCAGAGGCAAAATAACGTAGATCAAATCGTCTTCTCAATTTTCGCATCTGAATACCGTAACCTTAGGAAGACATGGATGGTAATTGACTGTCTGGATAGCATCAAGATGTTCGAGCCAGTCTCCCTCAGGACTAAAGTCTATCAGGAGTTGGTTTTGATCTACTTCGATTTGGCAAGAAATATCGGACTATCTCATAGCTACCTCTGGGCGGATCCTCCGATCCAAGGGGACAACTACATTTTCCCTGTCAAGCCAGCTAATCAGCCATCTCCAACTCCAACGATGCTCGAAAACTGGTACCTTACAGTGATGGAGAAGGGGAAATCCAACGGCATTGTCAAGGAATTCAGAAGCTTCGCTGAAGAGAAGGAGTTGAAGAAATTCAAAAAGCCAACCGAGATTCCGATCTTCCATAATAGTCTCTGGTCATCTTTGATGGCTGTTTATGATGTGGTTGGAAAGCCTCAGAAGCTTTGGAAATCGCTGTCGGCGGAGTGGGAGAGTCATGGATCGGATAACTGGTTTATTGAGTTCAATGAGGTTGAGAAGGATGAGCAATCGGAGGGGATGTGTCAGGAGAGACTTCATGAGATTCTTTTGAAAAAGGAAGAGTTGCAGT</canonical>
            <polymorphic>GTACTCCTCGTGGACATGTCGACGTGCGAAATTCGAATTTTTGGGTTACAAAGCGACTTGAAACTCAATTTCTTGCGATAAAATCGCTAGGAAACATGAAAAGTTGAAAAAAAACAATTTTCAATCGTGTTTGTACTGAACATGTGAAAAACGGCATGGCATTTCCAATCTAGGTCTGTTTTACACCCTCCAAAATTTTCAAAGAGCTCCAGACTCCTGAAAAATGGTCAAATTTTCCAAAAATCATTTTATTAACCGGTACTGCATTTTCCAGATGACTCCGTAAAGACTGGAGACTTGGCTCCACCCTCCTGGAAGTCAAAATTCATTGCCAAGTATGGGACGGTCATCAAATTCGCCTCACGCGCAATCCACGTCTTCCAGAGGCAAAATAACGTAGATCAAATCGTCTTCTCAATTTTCGCATCTGAATACCGTAACCTTAGGAAGACATGGATGGTAATTGACTGTCTGGATAGCATCAAGATGTTCGAGCCAGYCTCCCTCAGGACTAAAGTCTATCAGGAGTTGGTTTTGATCTACTTCGATTTGGCAAGAAATATCGGACTATCTCATAGCTACCTCTGGGCGGATCCTCCGATCCAAGGGGACAACTACATTTTCCCTGTCAAGCCAGCTAATCAGCCATCTCCAACTCCAACGATGCTCGAAAACTGGTACCTTACAGTGATGGAGAAGGGGAAATCCAACGGCATTGTCAAGGAATTCAGAAGCTTCGCTGAAGAGAAGGAGTTGAAGAAATTCAAAAAGCCAACCGAGATTCCGATCTTCCATAATAGTCTCTGGTCATCTTTGATGGCTGTTTATGATGTGGTTGGAAAGCCTCAGAAGCTTTGGAAATCGCTGTCGGCGGAGTGGGAGAGTCATGGATCGGATAACTGGTTTATTGAGTTCAATGAGGTTGAGAAGGATGAGCAATCGGAGGGGATGTGTCAGGAGAGACTTCATGAGATTCTTTTGAAAAAGGAAGAGTTGCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGACATGGATGGTAATTGACT</pcr_primer_p1>
		<pcr_primer_p2>CATCACTGTAAGGTACCAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAGACATGGATGGTAATTGACTGTCTGGATAGCATCAAGATGTTCGAGCCAGTCTCCCTCAGGACTAAAGTCTATCAGGAGTTGGTTTTGATCTACTTCGATTTGGCAAGAAATATCGGACTATCTCATAGCTACCTCTGGGCGGATCCTCCGATCCAAGGGGACAACTACATTTTCCCTGTCAAGCCAGCTAATCAGCCATCTCCAACTCCAACGATGCTCGAAAACTGGTACCTTACAGTGATG</canonical_amplicon>
		<polymorphic_amplicon>AAGACATGGATGGTAATTGACTGTCTGGATAGCATCAAGATGTTCGAGCCAGYCTCCCTCAGGACTAAAGTCTATCAGGAGTTGGTTTTGATCTACTTCGATTTGGCAAGAAATATCGGACTATCTCATAGCTACCTCTGGGCGGATCCTCCGATCCAAGGGGACAACTACATTTTCCCTGTCAAGCCAGCTAATCAGCCATCTCCAACTCCAACGATGCTCGAAAACTGGTACCTTACAGTGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34352</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>322250</contig_pos>
        <strand>+</strand>
        <context>CTTCGATTTG[G/T]CAAGAAATAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCCTCAGGACTAAAGTCTATCAGGAGTTGGTTTTGATCTACTTCGATTTG</left_flank>
        <right_flank>CAAGAAATATCGGACTATCTCATAGCTACCTCTGGGCGGATCCTCCGATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACTTGAAACTCAATTTCTTGCGATAAAATCGCTAGGAAACATGAAAAGTTGAAAAAAAACAATTTTCAATCGTGTTTGTACTGAACATGTGAAAAACGGCATGGCATTTCCAATCTAGGTCTGTTTTACACCCTCCAAAATTTTCAAAGAGCTCCAGACTCCTGAAAAATGGTCAAATTTTCCAAAAATCATTTTATTAACCGGTACTGCATTTTCCAGATGACTCCGTAAAGACTGGAGACTTGGCTCCACCCTCCTGGAAGTCAAAATTCATTGCCAAGTATGGGACGGTCATCAAATTCGCCTCACGCGCAATCCACGTCTTCCAGAGGCAAAATAACGTAGATCAAATCGTCTTCTCAATTTTCGCATCTGAATACCGTAACCTTAGGAAGACATGGATGGTAATTGACTGTCTGGATAGCATCAAGATGTTCGAGCCAGTCTCCCTCAGGACTAAAGTCTATCAGGAGTTGGTTTTGATCTACTTCGATTTGGCAAGAAATATCGGACTATCTCATAGCTACCTCTGGGCGGATCCTCCGATCCAAGGGGACAACTACATTTTCCCTGTCAAGCCAGCTAATCAGCCATCTCCAACTCCAACGATGCTCGAAAACTGGTACCTTACAGTGATGGAGAAGGGGAAATCCAACGGCATTGTCAAGGAATTCAGAAGCTTCGCTGAAGAGAAGGAGTTGAAGAAATTCAAAAAGCCAACCGAGATTCCGATCTTCCATAATAGTCTCTGGTCATCTTTGATGGCTGTTTATGATGTGGTTGGAAAGCCTCAGAAGCTTTGGAAATCGCTGTCGGCGGAGTGGGAGAGTCATGGATCGGATAACTGGTTTATTGAGTTCAATGAGGTTGAGAAGGATGAGCAATCGGAGGGGATGTGTCAGGAGAGACTTCATGAGATTCTTTTGAAAAAGGAAGAGTTGCAGTACCACTGCATGGAGAATAGTTGGCAATTTGGGAATCCGAGAAGAGCCAGATAT</canonical>
            <polymorphic>CGACTTGAAACTCAATTTCTTGCGATAAAATCGCTAGGAAACATGAAAAGTTGAAAAAAAACAATTTTCAATCGTGTTTGTACTGAACATGTGAAAAACGGCATGGCATTTCCAATCTAGGTCTGTTTTACACCCTCCAAAATTTTCAAAGAGCTCCAGACTCCTGAAAAATGGTCAAATTTTCCAAAAATCATTTTATTAACCGGTACTGCATTTTCCAGATGACTCCGTAAAGACTGGAGACTTGGCTCCACCCTCCTGGAAGTCAAAATTCATTGCCAAGTATGGGACGGTCATCAAATTCGCCTCACGCGCAATCCACGTCTTCCAGAGGCAAAATAACGTAGATCAAATCGTCTTCTCAATTTTCGCATCTGAATACCGTAACCTTAGGAAGACATGGATGGTAATTGACTGTCTGGATAGCATCAAGATGTTCGAGCCAGTCTCCCTCAGGACTAAAGTCTATCAGGAGTTGGTTTTGATCTACTTCGATTTGKCAAGAAATATCGGACTATCTCATAGCTACCTCTGGGCGGATCCTCCGATCCAAGGGGACAACTACATTTTCCCTGTCAAGCCAGCTAATCAGCCATCTCCAACTCCAACGATGCTCGAAAACTGGTACCTTACAGTGATGGAGAAGGGGAAATCCAACGGCATTGTCAAGGAATTCAGAAGCTTCGCTGAAGAGAAGGAGTTGAAGAAATTCAAAAAGCCAACCGAGATTCCGATCTTCCATAATAGTCTCTGGTCATCTTTGATGGCTGTTTATGATGTGGTTGGAAAGCCTCAGAAGCTTTGGAAATCGCTGTCGGCGGAGTGGGAGAGTCATGGATCGGATAACTGGTTTATTGAGTTCAATGAGGTTGAGAAGGATGAGCAATCGGAGGGGATGTGTCAGGAGAGACTTCATGAGATTCTTTTGAAAAAGGAAGAGTTGCAGTACCACTGCATGGAGAATAGTTGGCAATTTGGGAATCCGAGAAGAGCCAGATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGACATGGATGGTAATTGACT</pcr_primer_p1>
		<pcr_primer_p2>CATCACTGTAAGGTACCAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAGACATGGATGGTAATTGACTGTCTGGATAGCATCAAGATGTTCGAGCCAGTCTCCCTCAGGACTAAAGTCTATCAGGAGTTGGTTTTGATCTACTTCGATTTGGCAAGAAATATCGGACTATCTCATAGCTACCTCTGGGCGGATCCTCCGATCCAAGGGGACAACTACATTTTCCCTGTCAAGCCAGCTAATCAGCCATCTCCAACTCCAACGATGCTCGAAAACTGGTACCTTACAGTGATG</canonical_amplicon>
		<polymorphic_amplicon>AAGACATGGATGGTAATTGACTGTCTGGATAGCATCAAGATGTTCGAGCCAGTCTCCCTCAGGACTAAAGTCTATCAGGAGTTGGTTTTGATCTACTTCGATTTGKCAAGAAATATCGGACTATCTCATAGCTACCTCTGGGCGGATCCTCCGATCCAAGGGGACAACTACATTTTCCCTGTCAAGCCAGCTAATCAGCCATCTCCAACTCCAACGATGCTCGAAAACTGGTACCTTACAGTGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34353</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>324509</contig_pos>
        <strand></strand>
        <context>agagagtggg[T/C]ctgctagmct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGTAGTCTAGCAGGCCCAAGTTAAAGGAGAATATAAGTGAAGAGAGTGGG</left_flank>
        <right_flank>CTGCTAGCCTACAAACTACAACTCGAACACTAGCAGACCCACGCGTTCAC</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAAAAAATAACCCGTAAAAATTTCAAAAACAATCTCAATCAAATGGCTTCTGATGGGGACATGAATAATCATCGGGAAATTTGAATTGAAACGTGGCATAATTGACTCCGCCCCTTTCCAAAAACCATAACATCAACTCGTCACCAATCCAAGCTCCGCCCCCAAAAACGCCGCCAAATCGATATTCGGTGTATCCTGGGTCCGTCAAAATTGTAACACATCCAGATTGTAGATTTTTTCGTGTAACGTAAAAATGGGTAGGGTAGATCACAGCGATCAGTTGATGTTCAATATCGTCGTCGATACGAGTGGAAATTCTGAAAATAGACAGAAATGCATATAAAATTCGTGCTCAGCTCAAAATTTAGGTCTAGACACTTTTTAAAACGAAGTTCTAGCGATACGTTTGAAGGTTAGAGTTAGCCTGCTAATGTTGAAGCTGTAGTTTGTAGTCTAGCAGGCCCAAGTTAAAGGAGAATATAAGTGAAGAGAGTGGGTCTGCTAGCCTACAAACTACAACTCGAACACTAGCAGACCCACGCGTTCACTAGAAAAGTTGCCCTGCTAGTGATTCCTTTGTAGTTTGTAGTCTAGCAGGCCCAACTTCAAGGTAAAAACCTTCAAATTCGTGCTAGACACAAAAATAAAATAGGTTTTCTGCTCAAAAAATTACGGAATTTTTGAATTTGACACTCATTTTGCCGACAAAACTGTCCGTTGGCCTGCTAATTCTCATTCTGTAGTTTGTAGCCAAGCAGACCAATCATTTTCAACGATTTCTTTTTATTTTGACTGTTTTCGACCGGGAAAAAAACTTGCAGACTAGTTTTTTGTGAGGAATCCAAATTTCTAGTTCATTTTCATCTAAATTTTTTGGAAAATTGAAAAAAACTTACACCCTTGCTCCCGTATCCGTACCATTGGTTCCATTAACGCTCATCCCGTAGTACACAACATTTGTCAAATTTTGATAAATATCGAAAAGTACCAAATCACCC</canonical>
            <polymorphic>TTCAAAAAATAACCCGTAAAAATTTCAAAAACAATCTCAATCAAATGGCTTCTGATGGGGACATGAATAATCATCGGGAAATTTGAATTGAAACGTGGCATAATTGACTCCGCCCCTTTCCAAAAACCATAACATCAACTCGTCACCAATCCAAGCTCCGCCCCCAAAAACGCCGCCAAATCGATATTCGGTGTATCCTGGGTCCGTCAAAATTGTAACACATCCAGATTGTAGATTTTTTCGTGTAACGTAAAAATGGGTAGGGTAGATCACAGCGATCAGTTGATGTTCAATATCGTCGTCGATACGAGTGGAAATTCTGAAAATAGACAGAAATGCATATAAAATTCGTGCTCAGCTCAAAATTTAGGTCTAGACACTTTTTAAAACGAAGTTCTAGCGATACGTTTGAAGGTTAGAGTTAGCCTGCTAATGTTGAAGCTGTAGTTTGTAGTCTAGCAGGCCCAAGTTAAAGGAGAATATAAGTGAAGAGAGTGGGYCTGCTAGCCTACAAACTACAACTCGAACACTAGCAGACCCACGCGTTCACTAGAAAAGTTGCCCTGCTAGTGATTCCTTTGTAGTTTGTAGTCTAGCAGGCCCAACTTCAAGGTAAAAACCTTCAAATTCGTGCTAGACACAAAAATAAAATAGGTTTTCTGCTCAAAAAATTACGGAATTTTTGAATTTGACACTCATTTTGCCGACAAAACTGTCCGTTGGCCTGCTAATTCTCATTCTGTAGTTTGTAGCCAAGCAGACCAATCATTTTCAACGATTTCTTTTTATTTTGACTGTTTTCGACCGGGAAAAAAACTTGCAGACTAGTTTTTTGTGAGGAATCCAAATTTCTAGTTCATTTTCATCTAAATTTTTTGGAAAATTGAAAAAAACTTACACCCTTGCTCCCGTATCCGTACCATTGGTTCCATTAACGCTCATCCCGTAGTACACAACATTTGTCAAATTTTGATAAATATCGAAAAGTACCAAATCACCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGCATATAAAATTCGTGCT</pcr_primer_p1>
		<pcr_primer_p2>GCAGAAAACCTATTTTATTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>AAATGCATATAAAATTCGTGCTCAGCTCAAAATTTAGGTCTAGACACTTTTTAAAACGAAGTTCTAGCGATACGTTTGAAGGTTAGAGTTAGCCTGCTAATGTTGAAGCTGTAGTTTGTAGTCTAGCAGGCCCAAGTTAAAGGAGAATATAAGTGAAGAGAGTGGGTCTGCTAGCCTACAAACTACAACTCGAACACTAGCAGACCCACGCGTTCACTAGAAAAGTTGCCCTGCTAGTGATTCCTTTGTAGTTTGTAGTCTAGCAGGCCCAACTTCAAGGTAAAAACCTTCAAATTCGTGCTAGACACAAAAATAAAATAGGTTTTCTGC</canonical_amplicon>
		<polymorphic_amplicon>AAATGCATATAAAATTCGTGCTCAGCTCAAAATTTAGGTCTAGACACTTTTTAAAACGAAGTTCTAGCGATACGTTTGAAGGTTAGAGTTAGCCTGCTAATGTTGAAGCTGTAGTTTGTAGTCTAGCAGGCCCAAGTTAAAGGAGAATATAAGTGAAGAGAGTGGGYCTGCTAGCCTACAAACTACAACTCGAACACTAGCAGACCCACGCGTTCACTAGAAAAGTTGCCCTGCTAGTGATTCCTTTGTAGTTTGTAGTCTAGCAGGCCCAACTTCAAGGTAAAAACCTTCAAATTCGTGCTAGACACAAAAATAAAATAGGTTTTCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34354</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>324517</contig_pos>
        <strand></strand>
        <context>ggyctgctag[C/A]ctacaaacta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AGCAGGCCCAAGTTAAAGGAGAATATAAGTGAAGAGAGTGGGTCTGCTAG</left_flank>
        <right_flank>CTACAAACTACAACTCGAACACTAGCAGACCCACGCGTTCACTAGAAAAG</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAACCCGTAAAAATTTCAAAAACAATCTCAATCAAATGGCTTCTGATGGGGACATGAATAATCATCGGGAAATTTGAATTGAAACGTGGCATAATTGACTCCGCCCCTTTCCAAAAACCATAACATCAACTCGTCACCAATCCAAGCTCCGCCCCCAAAAACGCCGCCAAATCGATATTCGGTGTATCCTGGGTCCGTCAAAATTGTAACACATCCAGATTGTAGATTTTTTCGTGTAACGTAAAAATGGGTAGGGTAGATCACAGCGATCAGTTGATGTTCAATATCGTCGTCGATACGAGTGGAAATTCTGAAAATAGACAGAAATGCATATAAAATTCGTGCTCAGCTCAAAATTTAGGTCTAGACACTTTTTAAAACGAAGTTCTAGCGATACGTTTGAAGGTTAGAGTTAGCCTGCTAATGTTGAAGCTGTAGTTTGTAGTCTAGCAGGCCCAAGTTAAAGGAGAATATAAGTGAAGAGAGTGGGTCTGCTAGCCTACAAACTACAACTCGAACACTAGCAGACCCACGCGTTCACTAGAAAAGTTGCCCTGCTAGTGATTCCTTTGTAGTTTGTAGTCTAGCAGGCCCAACTTCAAGGTAAAAACCTTCAAATTCGTGCTAGACACAAAAATAAAATAGGTTTTCTGCTCAAAAAATTACGGAATTTTTGAATTTGACACTCATTTTGCCGACAAAACTGTCCGTTGGCCTGCTAATTCTCATTCTGTAGTTTGTAGCCAAGCAGACCAATCATTTTCAACGATTTCTTTTTATTTTGACTGTTTTCGACCGGGAAAAAAACTTGCAGACTAGTTTTTTGTGAGGAATCCAAATTTCTAGTTCATTTTCATCTAAATTTTTTGGAAAATTGAAAAAAACTTACACCCTTGCTCCCGTATCCGTACCATTGGTTCCATTAACGCTCATCCCGTAGTACACAACATTTGTCAAATTTTGATAAATATCGAAAAGTACCAAATCACCCTTCCTACT</canonical>
            <polymorphic>ATAACCCGTAAAAATTTCAAAAACAATCTCAATCAAATGGCTTCTGATGGGGACATGAATAATCATCGGGAAATTTGAATTGAAACGTGGCATAATTGACTCCGCCCCTTTCCAAAAACCATAACATCAACTCGTCACCAATCCAAGCTCCGCCCCCAAAAACGCCGCCAAATCGATATTCGGTGTATCCTGGGTCCGTCAAAATTGTAACACATCCAGATTGTAGATTTTTTCGTGTAACGTAAAAATGGGTAGGGTAGATCACAGCGATCAGTTGATGTTCAATATCGTCGTCGATACGAGTGGAAATTCTGAAAATAGACAGAAATGCATATAAAATTCGTGCTCAGCTCAAAATTTAGGTCTAGACACTTTTTAAAACGAAGTTCTAGCGATACGTTTGAAGGTTAGAGTTAGCCTGCTAATGTTGAAGCTGTAGTTTGTAGTCTAGCAGGCCCAAGTTAAAGGAGAATATAAGTGAAGAGAGTGGGTCTGCTAGMCTACAAACTACAACTCGAACACTAGCAGACCCACGCGTTCACTAGAAAAGTTGCCCTGCTAGTGATTCCTTTGTAGTTTGTAGTCTAGCAGGCCCAACTTCAAGGTAAAAACCTTCAAATTCGTGCTAGACACAAAAATAAAATAGGTTTTCTGCTCAAAAAATTACGGAATTTTTGAATTTGACACTCATTTTGCCGACAAAACTGTCCGTTGGCCTGCTAATTCTCATTCTGTAGTTTGTAGCCAAGCAGACCAATCATTTTCAACGATTTCTTTTTATTTTGACTGTTTTCGACCGGGAAAAAAACTTGCAGACTAGTTTTTTGTGAGGAATCCAAATTTCTAGTTCATTTTCATCTAAATTTTTTGGAAAATTGAAAAAAACTTACACCCTTGCTCCCGTATCCGTACCATTGGTTCCATTAACGCTCATCCCGTAGTACACAACATTTGTCAAATTTTGATAAATATCGAAAAGTACCAAATCACCCTTCCTACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCTAGC</site>
                <isoschizomers>
                    <enzyme>AsuNHI</enzyme>
                    <enzyme>BmtI</enzyme>
                    <enzyme>NheI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>419 283 127 93 44 34</canonical_bands>
                <polymorphic_bands>419 283 137 127 34</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>256 203 123 107 93 67 44 40 29 22 16</canonical_bands>
                <polymorphic_bands>256 203 137 123 107 67 40 29 22 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGCATATAAAATTCGTGCT</pcr_primer_p1>
		<pcr_primer_p2>GCAGAAAACCTATTTTATTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>AAATGCATATAAAATTCGTGCTCAGCTCAAAATTTAGGTCTAGACACTTTTTAAAACGAAGTTCTAGCGATACGTTTGAAGGTTAGAGTTAGCCTGCTAATGTTGAAGCTGTAGTTTGTAGTCTAGCAGGCCCAAGTTAAAGGAGAATATAAGTGAAGAGAGTGGGTCTGCTAGCCTACAAACTACAACTCGAACACTAGCAGACCCACGCGTTCACTAGAAAAGTTGCCCTGCTAGTGATTCCTTTGTAGTTTGTAGTCTAGCAGGCCCAACTTCAAGGTAAAAACCTTCAAATTCGTGCTAGACACAAAAATAAAATAGGTTTTCTGC</canonical_amplicon>
		<polymorphic_amplicon>AAATGCATATAAAATTCGTGCTCAGCTCAAAATTTAGGTCTAGACACTTTTTAAAACGAAGTTCTAGCGATACGTTTGAAGGTTAGAGTTAGCCTGCTAATGTTGAAGCTGTAGTTTGTAGTCTAGCAGGCCCAAGTTAAAGGAGAATATAAGTGAAGAGAGTGGGTCTGCTAGMCTACAAACTACAACTCGAACACTAGCAGACCCACGCGTTCACTAGAAAAGTTGCCCTGCTAGTGATTCCTTTGTAGTTTGTAGTCTAGCAGGCCCAACTTCAAGGTAAAAACCTTCAAATTCGTGCTAGACACAAAAATAAAATAGGTTTTCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34355</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>327252</contig_pos>
        <strand>+</strand>
        <context>TTCAGCCTAA[C/T]TTTTAAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTGGTCTTTTACCCTGAGAATTTTTGAATTTTCACATTTTCAGCCTAA</left_flank>
        <right_flank>TTTTAAAAAATTCAGATATCGGAAAATATGAGGAAATAGGAATCATTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTTTACCTTGTAGTTTGTAGCCTAGCAGGCCCACTCTGTTCGGTTAGGGTTGCCTTTCACTTGGGTCTGCTAGACTACAAACTACAGAACAAACTTTAGCAGACCAATCATGCGCGCATTGAAGGTGGGCCAATTGGGTCTGCTAGACTACAAACTACAACTCTAACATGAGCAAACCAACCATCATCTTCAAACTTAACGTTGAAACTTCATTCAAAAAAGTTTCCAGATCCAAATTTTGCGCTTAAATTGAATTTGATACTCATTTCTTTCTATTTTCAATCTAACGCCATTTTTAGGGGGTTGAATGTGTAGTTTGTAGTCTAGAAGACCAAAATGTGACTCACTTGATTCCCAATAGCTATCGTGTCTGAGTCTCTTCTATGTCGTCTCTCAAATTGTGATGATGACGTGGCTTCAGATGACGTCATTTCCTCATCCTCAACTTCTTGGTCTTTTACCCTGAGAATTTTTGAATTTTCACATTTTCAGCCTAACTTTTAAAAAATTCAGATATCGGAAAATATGAGGAAATAGGAATCATTTCTAAGTTTTTGGGTTTTTTTAATTTATCGAATTTCTGAATTTTCAAAAATGTAGAAACCTAGAAGTTTATTTCAGCGTTTTATGACATTTTAAGTTTTGATTTTTAGAGATTCTGAGACCCTGAAATTCTTATTATTTGGGATTTTTATTTTTTATAGTTTTTGTAATTTTCGGGTTTTCGAGGATTTTTGAAATTTTTAGGATTCTGAGAGTCTGAAATTGAAGTTTTTTGGAGCTTTTGGGGTTTTTGGCTTCCGAATTAAAATTCATAAGATTTCTGAAATTCTAAACCACTAAAATTGTTGAAGTTTAGAAATTCAAAAATTCCGAAATTCAAAAATCCAAAATTCCGAAATTTAAAATACCGAAAGTTTTAAATTTTCAAACTTTCTGAATTCTTAAAATTCTAATACATATGTTTAAAAATAGAAATTGCTAAACTTTCAGAATTT</canonical>
            <polymorphic>ATGTTTACCTTGTAGTTTGTAGCCTAGCAGGCCCACTCTGTTCGGTTAGGGTTGCCTTTCACTTGGGTCTGCTAGACTACAAACTACAGAACAAACTTTAGCAGACCAATCATGCGCGCATTGAAGGTGGGCCAATTGGGTCTGCTAGACTACAAACTACAACTCTAACATGAGCAAACCAACCATCATCTTCAAACTTAACGTTGAAACTTCATTCAAAAAAGTTTCCAGATCCAAATTTTGCGCTTAAATTGAATTTGATACTCATTTCTTTCTATTTTCAATCTAACGCCATTTTTAGGGGGTTGAATGTGTAGTTTGTAGTCTAGAAGACCAAAATGTGACTCACTTGATTCCCAATAGCTATCGTGTCTGAGTCTCTTCTATGTCGTCTCTCAAATTGTGATGATGACGTGGCTTCAGATGACGTCATTTCCTCATCCTCAACTTCTTGGTCTTTTACCCTGAGAATTTTTGAATTTTCACATTTTCAGCCTAAYTTTTAAAAAATTCAGATATCGGAAAATATGAGGAAATAGGAATCATTTCTAAGTTTTTGGGTTTTTTTAATTTATCGAATTTCTGAATTTTCAAAAATGTAGAAACCTAGAAGTTTATTTCAGCGTTTTATGACATTTTAAGTTTTGATTTTTAGAGATTCTGAGACCCTGAAATTCTTATTATTTGGGATTTTTATTTTTTATAGTTTTTGTAATTTTCGGGTTTTCGAGGATTTTTGAAATTTTTAGGATTCTGAGAGTCTGAAATTGAAGTTTTTTGGAGCTTTTGGGGTTTTTGGCTTCCGAATTAAAATTCATAAGATTTCTGAAATTCTAAACCACTAAAATTGTTGAAGTTTAGAAATTCAAAAATTCCGAAATTCAAAAATCCAAAATTCCGAAATTTAAAATACCGAAAGTTTTAAATTTTCAAACTTTCTGAATTCTTAAAATTCTAATACATATGTTTAAAAATAGAAATTGCTAAACTTTCAGAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTATGTCGTCTCTCAAATTGT</pcr_primer_p1>
		<pcr_primer_p2>TCATAAAACGCTGAAATAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTCTATGTCGTCTCTCAAATTGTGATGATGACGTGGCTTCAGATGACGTCATTTCCTCATCCTCAACTTCTTGGTCTTTTACCCTGAGAATTTTTGAATTTTCACATTTTCAGCCTAACTTTTAAAAAATTCAGATATCGGAAAATATGAGGAAATAGGAATCATTTCTAAGTTTTTGGGTTTTTTTAATTTATCGAATTTCTGAATTTTCAAAAATGTAGAAACCTAGAAGTTTATTTCAGCGTTTTATGA</canonical_amplicon>
		<polymorphic_amplicon>TTCTATGTCGTCTCTCAAATTGTGATGATGACGTGGCTTCAGATGACGTCATTTCCTCATCCTCAACTTCTTGGTCTTTTACCCTGAGAATTTTTGAATTTTCACATTTTCAGCCTAAYTTTTAAAAAATTCAGATATCGGAAAATATGAGGAAATAGGAATCATTTCTAAGTTTTTGGGTTTTTTTAATTTATCGAATTTCTGAATTTTCAAAAATGTAGAAACCTAGAAGTTTATTTCAGCGTTTTATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34356</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>327490</contig_pos>
        <strand>+</strand>
        <context>CGAGGATTTT[C/G]GAAATTTTRA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGATTTTTATTTTTTATAGTTTTTGTAATTTTCGGGTTTTCGAGGATTTT</left_flank>
        <right_flank>GAAATTTTTAGGATTCTGAGAGTCTGAAATTGAAGTTTTTTGGAGCTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGCGCTTAAATTGAATTTGATACTCATTTCTTTCTATTTTCAATCTAACGCCATTTTTAGGGGGTTGAATGTGTAGTTTGTAGTCTAGAAGACCAAAATGTGACTCACTTGATTCCCAATAGCTATCGTGTCTGAGTCTCTTCTATGTCGTCTCTCAAATTGTGATGATGACGTGGCTTCAGATGACGTCATTTCCTCATCCTCAACTTCTTGGTCTTTTACCCTGAGAATTTTTGAATTTTCACATTTTCAGCCTAACTTTTAAAAAATTCAGATATCGGAAAATATGAGGAAATAGGAATCATTTCTAAGTTTTTGGGTTTTTTTAATTTATCGAATTTCTGAATTTTCAAAAATGTAGAAACCTAGAAGTTTATTTCAGCGTTTTATGACATTTTAAGTTTTGATTTTTAGAGATTCTGAGACCCTGAAATTCTTATTATTTGGGATTTTTATTTTTTATAGTTTTTGTAATTTTCGGGTTTTCGAGGATTTTTGAAATTTTTAGGATTCTGAGAGTCTGAAATTGAAGTTTTTTGGAGCTTTTGGGGTTTTTGGCTTCCGAATTAAAATTCATAAGATTTCTGAAATTCTAAACCACTAAAATTGTTGAAGTTTAGAAATTCAAAAATTCCGAAATTCAAAAATCCAAAATTCCGAAATTTAAAATACCGAAAGTTTTAAATTTTCAAACTTTCTGAATTCTTAAAATTCTAATACATATGTTTAAAAATAGAAATTGCTAAACTTTCAGAATTTTCAATTTTTTTCAAAAATTTATTTCAAAAAATGACAAAAAACAGTTAAAAACACAGTTTGAAATTTCTCACAAGCACAAAGCATGAAACTAAAAATCTTGCCTTTTTATTTTCAAATTAACACAAAAAAAGAAATTCACCCACATTTCGCAATTAAAAAATTCGTGTCGATGGGCTGGCTGGAAGTCAAATACACACTTTTTTTCTCCTCTTTTTCCTCTTTTTTCTCACTTATCAGA</canonical>
            <polymorphic>TTTTGCGCTTAAATTGAATTTGATACTCATTTCTTTCTATTTTCAATCTAACGCCATTTTTAGGGGGTTGAATGTGTAGTTTGTAGTCTAGAAGACCAAAATGTGACTCACTTGATTCCCAATAGCTATCGTGTCTGAGTCTCTTCTATGTCGTCTCTCAAATTGTGATGATGACGTGGCTTCAGATGACGTCATTTCCTCATCCTCAACTTCTTGGTCTTTTACCCTGAGAATTTTTGAATTTTCACATTTTCAGCCTAACTTTTAAAAAATTCAGATATCGGAAAATATGAGGAAATAGGAATCATTTCTAAGTTTTTGGGTTTTTTTAATTTATCGAATTTCTGAATTTTCAAAAATGTAGAAACCTAGAAGTTTATTTCAGCGTTTTATGACATTTTAAGTTTTGATTTTTAGAGATTCTGAGACCCTGAAATTCTTATTATTTGGGATTTTTATTTTTTATAGTTTTTGTAATTTTCGGGTTTTCGAGGATTTTSGAAATTTTTAGGATTCTGAGAGTCTGAAATTGAAGTTTTTTGGAGCTTTTGGGGTTTTTGGCTTCCGAATTAAAATTCATAAGATTTCTGAAATTCTAAACCACTAAAATTGTTGAAGTTTAGAAATTCAAAAATTCCGAAATTCAAAAATCCAAAATTCCGAAATTTAAAATACCGAAAGTTTTAAATTTTCAAACTTTCTGAATTCTTAAAATTCTAATACATATGTTTAAAAATAGAAATTGCTAAACTTTCAGAATTTTCAATTTTTTTCAAAAATTTATTTCAAAAAATGACAAAAAACAGTTAAAAACACAGTTTGAAATTTCTCACAAGCACAAAGCATGAAACTAAAAATCTTGCCTTTTTATTTTCAAATTAACACAAAAAAAGAAATTCACCCACATTTCGCAATTAAAAAATTCGTGTCGATGGGCTGGCTGGAAGTCAAATACACACTTTTTTTCTCCTCTTTTTCCTCTTTTTTCTCACTTATCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATTCTTATTATTTGGGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCTGAAAGTTTAGCAATTTCTATTT</pcr_primer_p2>
		<pcr_amplicon_size>326</pcr_amplicon_size>
		<canonical_amplicon>GAAATTCTTATTATTTGGGATTTTTATTTTTTATAGTTTTTGTAATTTTCGGGTTTTCGAGGATTTTTGAAATTTTTAGGATTCTGAGAGTCTGAAATTGAAGTTTTTTGGAGCTTTTGGGGTTTTTGGCTTCCGAATTAAAATTCATAAGATTTCTGAAATTCTAAACCACTAAAATTGTTGAAGTTTAGAAATTCAAAAATTCCGAAATTCAAAAATCCAAAATTCCGAAATTTAAAATACCGAAAGTTTTAAATTTTCAAACTTTCTGAATTCTTAAAATTCTAATACATATGTTTAAAAATAGAAATTGCTAAACTTTCAGA</canonical_amplicon>
		<polymorphic_amplicon>GAAATTCTTATTATTTGGGATTTTTATTTTTTATAGTTTTTGTAATTTTCGGGTTTTCGAGGATTTTSGAAATTTTTAGGATTCTGAGAGTCTGAAATTGAAGTTTTTTGGAGCTTTTGGGGTTTTTGGCTTCCGAATTAAAATTCATAAGATTTCTGAAATTCTAAACCACTAAAATTGTTGAAGTTTAGAAATTCAAAAATTCCGAAATTCAAAAATCCAAAATTCCGAAATTTAAAATACCGAAAGTTTTAAATTTTCAAACTTTCTGAATTCTTAAAATTCTAATACATATGTTTAAAAATAGAAATTGCTAAACTTTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34357</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>327499</contig_pos>
        <strand>+</strand>
        <context>TSGAAATTTT[A/G]AGGATTCTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTATAGTTTTTGTAATTTTCGGGTTTTCGAGGATTTTTGAAATTTT</left_flank>
        <right_flank>AGGATTCTGAGAGTCTGAAATTGAAGTTTTTTGGAGCTTTTGGGGTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATTGAATTTGATACTCATTTCTTTCTATTTTCAATCTAACGCCATTTTTAGGGGGTTGAATGTGTAGTTTGTAGTCTAGAAGACCAAAATGTGACTCACTTGATTCCCAATAGCTATCGTGTCTGAGTCTCTTCTATGTCGTCTCTCAAATTGTGATGATGACGTGGCTTCAGATGACGTCATTTCCTCATCCTCAACTTCTTGGTCTTTTACCCTGAGAATTTTTGAATTTTCACATTTTCAGCCTAACTTTTAAAAAATTCAGATATCGGAAAATATGAGGAAATAGGAATCATTTCTAAGTTTTTGGGTTTTTTTAATTTATCGAATTTCTGAATTTTCAAAAATGTAGAAACCTAGAAGTTTATTTCAGCGTTTTATGACATTTTAAGTTTTGATTTTTAGAGATTCTGAGACCCTGAAATTCTTATTATTTGGGATTTTTATTTTTTATAGTTTTTGTAATTTTCGGGTTTTCGAGGATTTTTGAAATTTTTAGGATTCTGAGAGTCTGAAATTGAAGTTTTTTGGAGCTTTTGGGGTTTTTGGCTTCCGAATTAAAATTCATAAGATTTCTGAAATTCTAAACCACTAAAATTGTTGAAGTTTAGAAATTCAAAAATTCCGAAATTCAAAAATCCAAAATTCCGAAATTTAAAATACCGAAAGTTTTAAATTTTCAAACTTTCTGAATTCTTAAAATTCTAATACATATGTTTAAAAATAGAAATTGCTAAACTTTCAGAATTTTCAATTTTTTTCAAAAATTTATTTCAAAAAATGACAAAAAACAGTTAAAAACACAGTTTGAAATTTCTCACAAGCACAAAGCATGAAACTAAAAATCTTGCCTTTTTATTTTCAAATTAACACAAAAAAAGAAATTCACCCACATTTCGCAATTAAAAAATTCGTGTCGATGGGCTGGCTGGAAGTCAAATACACACTTTTTTTCTCCTCTTTTTCCTCTTTTTTCTCACTTATCAGACAATTTTTT</canonical>
            <polymorphic>TAAATTGAATTTGATACTCATTTCTTTCTATTTTCAATCTAACGCCATTTTTAGGGGGTTGAATGTGTAGTTTGTAGTCTAGAAGACCAAAATGTGACTCACTTGATTCCCAATAGCTATCGTGTCTGAGTCTCTTCTATGTCGTCTCTCAAATTGTGATGATGACGTGGCTTCAGATGACGTCATTTCCTCATCCTCAACTTCTTGGTCTTTTACCCTGAGAATTTTTGAATTTTCACATTTTCAGCCTAACTTTTAAAAAATTCAGATATCGGAAAATATGAGGAAATAGGAATCATTTCTAAGTTTTTGGGTTTTTTTAATTTATCGAATTTCTGAATTTTCAAAAATGTAGAAACCTAGAAGTTTATTTCAGCGTTTTATGACATTTTAAGTTTTGATTTTTAGAGATTCTGAGACCCTGAAATTCTTATTATTTGGGATTTTTATTTTTTATAGTTTTTGTAATTTTCGGGTTTTCGAGGATTTTTGAAATTTTRAGGATTCTGAGAGTCTGAAATTGAAGTTTTTTGGAGCTTTTGGGGTTTTTGGCTTCCGAATTAAAATTCATAAGATTTCTGAAATTCTAAACCACTAAAATTGTTGAAGTTTAGAAATTCAAAAATTCCGAAATTCAAAAATCCAAAATTCCGAAATTTAAAATACCGAAAGTTTTAAATTTTCAAACTTTCTGAATTCTTAAAATTCTAATACATATGTTTAAAAATAGAAATTGCTAAACTTTCAGAATTTTCAATTTTTTTCAAAAATTTATTTCAAAAAATGACAAAAAACAGTTAAAAACACAGTTTGAAATTTCTCACAAGCACAAAGCATGAAACTAAAAATCTTGCCTTTTTATTTTCAAATTAACACAAAAAAAGAAATTCACCCACATTTCGCAATTAAAAAATTCGTGTCGATGGGCTGGCTGGAAGTCAAATACACACTTTTTTTCTCCTCTTTTTCCTCTTTTTTCTCACTTATCAGACAATTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATTCTTATTATTTGGGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCTGAAAGTTTAGCAATTTCTATTT</pcr_primer_p2>
		<pcr_amplicon_size>326</pcr_amplicon_size>
		<canonical_amplicon>GAAATTCTTATTATTTGGGATTTTTATTTTTTATAGTTTTTGTAATTTTCGGGTTTTCGAGGATTTTTGAAATTTTTAGGATTCTGAGAGTCTGAAATTGAAGTTTTTTGGAGCTTTTGGGGTTTTTGGCTTCCGAATTAAAATTCATAAGATTTCTGAAATTCTAAACCACTAAAATTGTTGAAGTTTAGAAATTCAAAAATTCCGAAATTCAAAAATCCAAAATTCCGAAATTTAAAATACCGAAAGTTTTAAATTTTCAAACTTTCTGAATTCTTAAAATTCTAATACATATGTTTAAAAATAGAAATTGCTAAACTTTCAGA</canonical_amplicon>
		<polymorphic_amplicon>GAAATTCTTATTATTTGGGATTTTTATTTTTTATAGTTTTTGTAATTTTCGGGTTTTCGAGGATTTTTGAAATTTTRAGGATTCTGAGAGTCTGAAATTGAAGTTTTTTGGAGCTTTTGGGGTTTTTGGCTTCCGAATTAAAATTCATAAGATTTCTGAAATTCTAAACCACTAAAATTGTTGAAGTTTAGAAATTCAAAAATTCCGAAATTCAAAAATCCAAAATTCCGAAATTTAAAATACCGAAAGTTTTAAATTTTCAAACTTTCTGAATTCTTAAAATTCTAATACATATGTTTAAAAATAGAAATTGCTAAACTTTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34358</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>330083</contig_pos>
        <strand>+</strand>
        <context>CAGCCCAATT[C/T]AAAACYAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCTCCAGCACAAACTACACTTTTATTATTCCACTTCACCCAGCCCAATT</left_flank>
        <right_flank>AAAACTAAAAATCCCAAAAAATGAGCAAAAATAAAGTTCCAATAATTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCAGAATAAACTTTTTTCCTATTTTTTGCTTCTTCAGATTTCAGATTCCTAAAAACAAAATCCTAAAATTTCACAAAAAAAATTTCATTTGATTTTTTTTCAAAAAATTTCGAAAAAAAACATTCTAAGGTTTTTTAACTTGCATTTTCCGAAAGTCAATCCAAAACTGCCAATTATAAAAATTCCACGTGGAAAAATTCCAGATTTCCAAATAAAATCGAAAAATTGGAATAATAAAAATAATTAACTTTTAAAAATTTTTTCAGCTCTTAAATTTTTTACAAAACCAAAATTGCTCATTTTAGAAAATCCACGTGTAAAAATTCTAGATTTCCAAAAAAACAAAATTTTCGAAATCTTCAAAAAAAATTATTTTTTTTAGATTTTTGAAAAAAATCTGTTCCACGTTTCCAAGGATTTAAAAAATCGATTTTTTGTAGTTTGTAGTCTCTCCAGCACAAACTACACTTTTATTATTCCACTTCACCCAGCCCAATTAAAAACTAAAAATCCCAAAAAATGAGCAAAAATAAAGTTCCAATAATTTTTCCCATCCGATTCTCCAATTGGCTGATCATCGAAACAAATATGTTCTCCGCCACATTCAACGTCTTCTGGTTTAGAAGACGTCACGTCTTCTATTGGAGCCTTCTTCTGTAAGCCAAGTGGCATTTTTGTGGCAGTCTTTGGGACGGTTACTGTGGTTTTGATTATTCTTATTGTTGTTGTAATAGTTATTGGGAGTACTGTAGTTGGCACTGTCGATGTTTCAGGGAGCACTGTAGAAGTTTGCGGAGTCTTTTCCATGGTTGCACTGAAAAAAACTAAAACTTCTGACACCACCACCAGAATCCACGTGTCACATTACCCCTACCTCCAAATTTTCAGACCGCTAACTCAAAGTGTAGTAAAGTCTGGTGTTTCGTCCGCAAACACGGAATTACGGACTAAACACCAGAATTCACGACACTTTGAGCTAGCGGTTTGAAAATTTCATAG</canonical>
            <polymorphic>CTCAGAATAAACTTTTTTCCTATTTTTTGCTTCTTCAGATTTCAGATTCCTAAAAACAAAATCCTAAAATTTCACAAAAAAAATTTCATTTGATTTTTTTTCAAAAAATTTCGAAAAAAAACATTCTAAGGTTTTTTAACTTGCATTTTCCGAAAGTCAATCCAAAACTGCCAATTATAAAAATTCCACGTGGAAAAATTCCAGATTTCCAAATAAAATCGAAAAATTGGAATAATAAAAATAATTAACTTTTAAAAATTTTTTCAGCTCTTAAATTTTTTACAAAACCAAAATTGCTCATTTTAGAAAATCCACGTGTAAAAATTCTAGATTTCCAAAAAAACAAAATTTTCGAAATCTTCAAAAAAAATTATTTTTTTTAGATTTTTGAAAAAAATCTGTTCCACGTTTCCAAGGATTTAAAAAATCGATTTTTTGTAGTTTGTAGTCTCTCCAGCACAAACTACACTTTTATTATTCCACTTCACCCAGCCCAATTYAAAACTAAAAATCCCAAAAAATGAGCAAAAATAAAGTTCCAATAATTTTTCCCATCCGATTCTCCAATTGGCTGATCATCGAAACAAATATGTTCTCCGCCACATTCAACGTCTTCTGGTTTAGAAGACGTCACGTCTTCTATTGGAGCCTTCTTCTGTAAGCCAAGTGGCATTTTTGTGGCAGTCTTTGGGACGGTTACTGTGGTTTTGATTATTCTTATTGTTGTTGTAATAGTTATTGGGAGTACTGTAGTTGGCACTGTCGATGTTTCAGGGAGCACTGTAGAAGTTTGCGGAGTCTTTTCCATGGTTGCACTGAAAAAAACTAAAACTTCTGACACCACCACCAGAATCCACGTGTCACATTACCCCTACCTCCAAATTTTCAGACCGCTAACTCAAAGTGTAGTAAAGTCTGGTGTTTCGTCCGCAAACACGGAATTACGGACTAAACACCAGAATTCACGACACTTTGAGCTAGCGGTTTGAAAATTTCATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 149 136 109 78 19 7</canonical_bands>
                <polymorphic_bands>580 149 136 109 19 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGAAAATCCACGTGTAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GGGAAAAATTATTGGAACTTTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTAGAAAATCCACGTGTAAAAATTCTAGATTTCCAAAAAAACAAAATTTTCGAAATCTTCAAAAAAAATTATTTTTTTTAGATTTTTGAAAAAAATCTGTTCCACGTTTCCAAGGATTTAAAAAATCGATTTTTTGTAGTTTGTAGTCTCTCCAGCACAAACTACACTTTTATTATTCCACTTCACCCAGCCCAATTAAAAACTAAAAATCCCAAAAAATGAGCAAAAATAAAGTTCCAATAATTTTTCCC</canonical_amplicon>
		<polymorphic_amplicon>TTAGAAAATCCACGTGTAAAAATTCTAGATTTCCAAAAAAACAAAATTTTCGAAATCTTCAAAAAAAATTATTTTTTTTAGATTTTTGAAAAAAATCTGTTCCACGTTTCCAAGGATTTAAAAAATCGATTTTTTGTAGTTTGTAGTCTCTCCAGCACAAACTACACTTTTATTATTCCACTTCACCCAGCCCAATTYAAAACTAAAAATCCCAAAAAATGAGCAAAAATAAAGTTCCAATAATTTTTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34359</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>351197</contig_pos>
        <strand></strand>
        <context>aatgtttttt[A/T]agacaatata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTCAAATCAAAGCCTTAGGCTGAAACTTTTCGCAGGAAAAATGTTTTTT</left_flank>
        <right_flank>AGACAATATAAAGCAAAAATCGGAATGTTCTGAAAAAATCAGTCAGAAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGTGTCATCTAAATGGGCTTTTCAACGATTTTGCACTGAAATCACTAACACAGAATCACCAAGGATCAAATAAATGGTCAAAATAGCTAAAAATAGAAGGAAAATACTCTAAAAATCGATGAAAAGCAGCGAAAAACCATTTTCTAGATGATAATGAGGAGAGAAAGAACAAAAAATGAGAAAATAAAATTCAAATTCAGCTTCTTGGCGCTGAAAAGGAACCGTTATTTCGGAGTGTCGTTGTCAAATTTTTTGAAGTGAGTTTTCAGAATTTTCAGGGAAAACGTTGGATTTTCAGGCGAAATTCGGGATTTTCAGACAAGATGGCCCAGAGGGAAAAAATCTGGAAAAAAATATAAAGTAAAATAGTACTGAAATTCGAAAACTCGGCGAAATTTTCAATTTTCTCGCTGAAAATTTCAAAAATTTTGAAAATTTGTGTTTTTTTGTTCAAATCAAAGCCTTAGGCTGAAACTTTTCGCAGGAAAAATGTTTTTTAAGACAATATAAAGCAAAAATCGGAATGTTCTGAAAAAATCAGTCAGAAAAAGTATTGAAATTAGAATCAGCGGAGTTTTCCCTTTTTTTTTCAGAATATTCCGTTTTTGTTTTATATTATAGGCTTAATATGGCTGAAAGCCTTCACATTTTCTGTAAGAAAATCCGAGAAAATTGAGCTCTCCGTGTCCAAAACTTTAAATTTCAGTTGGGCCTGCTAGGCTACAAACTACAAAAAAACATTAGCAGACCCATCTAGCGCGCATAAGAAATTGCATACTTGCGGACGGGCCCTGTCATAGTTTCTTTTAAGATTGATACTTTTTGACTAACTAAATTAGATATGGNNNNNNNNNNGCACCAGTGGGCCTGCTATGCTACAAACTACATAAGAAACATTAGCAGGCCCACCACAACGATGCGCACCTGGCTCTCTTTGAAAGCTTGTAACTTTTTTCTAACCGATTTTCAGATATACCTCCCAGAGACTTTTTTGTTGCT</canonical>
            <polymorphic>GGGTGTCATCTAAATGGGCTTTTCAACGATTTTGCACTGAAATCACTAACACAGAATCACCAAGGATCAAATAAATGGTCAAAATAGCTAAAAATAGAAGGAAAATACTCTAAAAATCGATGAAAAGCAGCGAAAAACCATTTTCTAGATGATAATGAGGAGAGAAAGAACAAAAAATGAGAAAATAAAATTCAAATTCAGCTTCTTGGCGCTGAAAAGGAACCGTTATTTCGGAGTGTCGTTGTCAAATTTTTTGAAGTGAGTTTTCAGAATTTTCAGGGAAAACGTTGGATTTTCAGGCGAAATTCGGGATTTTCAGACAAGATGGCCCAGAGGGAAAAAATCTGGAAAAAAATATAAAGTAAAATAGTACTGAAATTCGAAAACTCGGCGAAATTTTCAATTTTCTCGCTGAAAATTTCAAAAATTTTGAAAATTTGTGTTTTTTTGTTCAAATCAAAGCCTTAGGCTGAAACTTTTCGCAGGAAAAATGTTTTTTWAGACAATATAAAGCAAAAATCGGAATGTTCTGAAAAAATCAGTCAGAAAAAGTATTGAAATTAGAATCAGCGGAGTTTTCCCTTTTTTTTTCAGAATATTCCGTTTTTGTTTTATATTATAGGCTTAATATGGCTGAAAGCCTTCACATTTTCTGTAAGAAAATCCGAGAAAATTGAGCTCTCCGTGTCCAAAACTTTAAATTTCAGTTGGGCCTGCTAGGCTACAAACTACAAAAAAACATTAGCAGACCCATCTAGCGCGCATAAGAAATTGCATACTTGCGGACGGGCCCTGTCATAGTTTCTTTTAAGATTGATACTTTTTGACTAACTAAATTAGATATGGNNNNNNNNNNGCACCAGTGGGCCTGCTATGCTACAAACTACATAAGAAACATTAGCAGGCCCACCACAACGATGCGCACCTGGCTCTCTTTGAAAGCTTGTAACTTTTTTCTAACCGATTTTCAGATATACCTCCCAGAGACTTTTTTGTTGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>498 192 127 111 72</canonical_bands>
                <polymorphic_bands>625 192 111 72</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATTCGGGATTTTCAGAC</pcr_primer_p1>
		<pcr_primer_p2>TAAAGTTTTGGACACGGAGA</pcr_primer_p2>
		<pcr_amplicon_size>398</pcr_amplicon_size>
		<canonical_amplicon>GAAATTCGGGATTTTCAGACAAGATGGCCCAGAGGGAAAAAATCTGGAAAAAAATATAAAGTAAAATAGTACTGAAATTCGAAAACTCGGCGAAATTTTCAATTTTCTCGCTGAAAATTTCAAAAATTTTGAAAATTTGTGTTTTTTTGTTCAAATCAAAGCCTTAGGCTGAAACTTTTCGCAGGAAAAATGTTTTTTAAGACAATATAAAGCAAAAATCGGAATGTTCTGAAAAAATCAGTCAGAAAAAGTATTGAAATTAGAATCAGCGGAGTTTTCCCTTTTTTTTTCAGAATATTCCGTTTTTGTTTTATATTATAGGCTTAATATGGCTGAAAGCCTTCACATTTTCTGTAAGAAAATCCGAGAAAATTGAGCTCTCCGTGTCCAAAACTTTA</canonical_amplicon>
		<polymorphic_amplicon>GAAATTCGGGATTTTCAGACAAGATGGCCCAGAGGGAAAAAATCTGGAAAAAAATATAAAGTAAAATAGTACTGAAATTCGAAAACTCGGCGAAATTTTCAATTTTCTCGCTGAAAATTTCAAAAATTTTGAAAATTTGTGTTTTTTTGTTCAAATCAAAGCCTTAGGCTGAAACTTTTCGCAGGAAAAATGTTTTTTWAGACAATATAAAGCAAAAATCGGAATGTTCTGAAAAAATCAGTCAGAAAAAGTATTGAAATTAGAATCAGCGGAGTTTTCCCTTTTTTTTTCAGAATATTCCGTTTTTGTTTTATATTATAGGCTTAATATGGCTGAAAGCCTTCACATTTTCTGTAAGAAAATCCGAGAAAATTGAGCTCTCCGTGTCCAAAACTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34360</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>374585</contig_pos>
        <strand>+</strand>
        <context>GTCAAACAGT[C/T]CAACGGAACG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTCCGAAAATTCGAAATTCTCTCCAATTTCCCACAGTTGTCAAACAGT</left_flank>
        <right_flank>CAACGGAACGTAAACCAATACGGTCAAAACGATCAATGCTCGAACTCTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGGCATCCAGTGGCTCATAACAACCAAAATCACCAATTTCAAAACTCCAGAGCTCATTTTAACGGCTCAAAGCGTCCAAATCAAGATTTTTCGAATAATTATGATGCTCCAGAATACAGTAATCAAGCATTTGAGGATTTCAGAGAAGTTGGAGCTTTCAAAAATGCTCCAGAGGCTTCAGGAGCTTTAGAATATGCACAAAATGGACATCTACAGTACACTGTACAAAACTCTAATGCTCCAATTAAGATGAGCAATGCTGAAAATTATCCAGAATACGGTAATCAAGAATCTGAAGCCGTCCAGAAAGTTCCAATGGCTCCAGATGTCAAAAGAAGAAGAGTAAACGAAACTATTCAAATTCATGATGCTAGGAGAATCAATAGAAGCAATAATAATTATCAATATTCCGATTCTGAAGCTTCCACGTCTTCAGAATACACTTCAAATTCCGAAAATTCGAAATTCTCTCCAATTTCCCACAGTTGTCAAACAGTCCAACGGAACGTAAACCAATACGGTCAAAACGATCAATGCTCGAACTCTATTGCTCAGCCAGAGGCTCCAAAGTTTTATTGGAGTTCTACAGACTCCAAAAATGCTCCAGAAGATGCTCCAGGATTTTCAGAAGGTATTAAATATTGAAAATCGGAAATATTAATTTTTTTAAATTTTCAGAATTCAAATCAGAATTCGATGCTTATCAGAAATTTCAAATGGAGCCAGAATTTCAAAATTCGAATGCTCAAGCTCCTGAAAATGAATTTTTGACTCCAGATGCTCCAAAATCCTTCTCAATGGATTCAGAATTTGAAAATTCGAATCTTGAACATCAAGAAAATGAATTTTCGGCTCCAGATGCACCAAAATCCTACAGCAGGAAATACGAAAATTGGCCTACTGTCGATCCCAATGAGCGGATTTTATTCGATTTGCCAGATGGACCAATTTGGATGTGAAATTGGAAATTTTTAATAATTTTTTTTTTGAAAATTAAC</canonical>
            <polymorphic>ATGGGCATCCAGTGGCTCATAACAACCAAAATCACCAATTTCAAAACTCCAGAGCTCATTTTAACGGCTCAAAGCGTCCAAATCAAGATTTTTCGAATAATTATGATGCTCCAGAATACAGTAATCAAGCATTTGAGGATTTCAGAGAAGTTGGAGCTTTCAAAAATGCTCCAGAGGCTTCAGGAGCTTTAGAATATGCACAAAATGGACATCTACAGTACACTGTACAAAACTCTAATGCTCCAATTAAGATGAGCAATGCTGAAAATTATCCAGAATACGGTAATCAAGAATCTGAAGCCGTCCAGAAAGTTCCAATGGCTCCAGATGTCAAAAGAAGAAGAGTAAACGAAACTATTCAAATTCATGATGCTAGGAGAATCAATAGAAGCAATAATAATTATCAATATTCCGATTCTGAAGCTTCCACGTCTTCAGAATACACTTCAAATTCCGAAAATTCGAAATTCTCTCCAATTTCCCACAGTTGTCAAACAGTYCAACGGAACGTAAACCAATACGGTCAAAACGATCAATGCTCGAACTCTATTGCTCAGCCAGAGGCTCCAAAGTTTTATTGGAGTTCTACAGACTCCAAAAATGCTCCAGAAGATGCTCCAGGATTTTCAGAAGGTATTAAATATTGAAAATCGGAAATATTAATTTTTTTAAATTTTCAGAATTCAAATCAGAATTCGATGCTTATCAGAAATTTCAAATGGAGCCAGAATTTCAAAATTCGAATGCTCAAGCTCCTGAAAATGAATTTTTGACTCCAGATGCTCCAAAATCCTTCTCAATGGATTCAGAATTTGAAAATTCGAATCTTGAACATCAAGAAAATGAATTTTCGGCTCCAGATGCACCAAAATCCTACAGCAGGAAATACGAAAATTGGCCTACTGTCGATCCCAATGAGCGGATTTTATTCGATTTGCCAGATGGACCAATTTGGATGTGAAATTGGAAATTTTTAATAATTTTTTTTTTGAAAATTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTCAAATTCATGATGCTAGG</pcr_primer_p1>
		<pcr_primer_p2>GCATTTTTGGAGTCTGTAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATTCAAATTCATGATGCTAGGAGAATCAATAGAAGCAATAATAATTATCAATATTCCGATTCTGAAGCTTCCACGTCTTCAGAATACACTTCAAATTCCGAAAATTCGAAATTCTCTCCAATTTCCCACAGTTGTCAAACAGTCCAACGGAACGTAAACCAATACGGTCAAAACGATCAATGCTCGAACTCTATTGCTCAGCCAGAGGCTCCAAAGTTTTATTGGAGTTCTACAGACTCCAAAAATGC</canonical_amplicon>
		<polymorphic_amplicon>CTATTCAAATTCATGATGCTAGGAGAATCAATAGAAGCAATAATAATTATCAATATTCCGATTCTGAAGCTTCCACGTCTTCAGAATACACTTCAAATTCCGAAAATTCGAAATTCTCTCCAATTTCCCACAGTTGTCAAACAGTYCAACGGAACGTAAACCAATACGGTCAAAACGATCAATGCTCGAACTCTATTGCTCAGCCAGAGGCTCCAAAGTTTTATTGGAGTTCTACAGACTCCAAAAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34361</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>374831</contig_pos>
        <strand>+</strand>
        <context>AAATTCGAAT[G/T]CTCAAGCTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGATGCTTATCAGAAATTTCAAATGGAGCCAGAATTTCAAAATTCGAAT</left_flank>
        <right_flank>CTCAAGCTCCTGAAAATGAATTTTTGACTCCAGATGCTCCAAAATCCTTC</right_flank>
        <qual_score>145</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAGATGAGCAATGCTGAAAATTATCCAGAATACGGTAATCAAGAATCTGAAGCCGTCCAGAAAGTTCCAATGGCTCCAGATGTCAAAAGAAGAAGAGTAAACGAAACTATTCAAATTCATGATGCTAGGAGAATCAATAGAAGCAATAATAATTATCAATATTCCGATTCTGAAGCTTCCACGTCTTCAGAATACACTTCAAATTCCGAAAATTCGAAATTCTCTCCAATTTCCCACAGTTGTCAAACAGTCCAACGGAACGTAAACCAATACGGTCAAAACGATCAATGCTCGAACTCTATTGCTCAGCCAGAGGCTCCAAAGTTTTATTGGAGTTCTACAGACTCCAAAAATGCTCCAGAAGATGCTCCAGGATTTTCAGAAGGTATTAAATATTGAAAATCGGAAATATTAATTTTTTTAAATTTTCAGAATTCAAATCAGAATTCGATGCTTATCAGAAATTTCAAATGGAGCCAGAATTTCAAAATTCGAATGCTCAAGCTCCTGAAAATGAATTTTTGACTCCAGATGCTCCAAAATCCTTCTCAATGGATTCAGAATTTGAAAATTCGAATCTTGAACATCAAGAAAATGAATTTTCGGCTCCAGATGCACCAAAATCCTACAGCAGGAAATACGAAAATTGGCCTACTGTCGATCCCAATGAGCGGATTTTATTCGATTTGCCAGATGGACCAATTTGGATGTGAAATTGGAAATTTTTAATAATTTTTTTTTTGAAAATTAACTTTTTCAATTTTTTCTAATTGTCCATTTTTTTCTAATTTTTTAATCTAATCGGTATTTTAACTATTCCCTGAGCTACTCATTTTTTCAAACTTTCTTGTTAATTCAAATGTTTTCTCTTTTTTTAACCTAATTCGATTTTAAAAAAATAATATTTAATCAAGAAATTTTTTTTTTCAAAATTGAGAAATTAATTGTATTTTTCCAAAATGTATACTTAATTTCAATTTTTGAAAATGAATTTTTTC</canonical>
            <polymorphic>TTAAGATGAGCAATGCTGAAAATTATCCAGAATACGGTAATCAAGAATCTGAAGCCGTCCAGAAAGTTCCAATGGCTCCAGATGTCAAAAGAAGAAGAGTAAACGAAACTATTCAAATTCATGATGCTAGGAGAATCAATAGAAGCAATAATAATTATCAATATTCCGATTCTGAAGCTTCCACGTCTTCAGAATACACTTCAAATTCCGAAAATTCGAAATTCTCTCCAATTTCCCACAGTTGTCAAACAGTCCAACGGAACGTAAACCAATACGGTCAAAACGATCAATGCTCGAACTCTATTGCTCAGCCAGAGGCTCCAAAGTTTTATTGGAGTTCTACAGACTCCAAAAATGCTCCAGAAGATGCTCCAGGATTTTCAGAAGGTATTAAATATTGAAAATCGGAAATATTAATTTTTTTAAATTTTCAGAATTCAAATCAGAATTCGATGCTTATCAGAAATTTCAAATGGAGCCAGAATTTCAAAATTCGAATKCTCAAGCTCCTGAAAATGAATTTTTGACTCCAGATGCTCCAAAATCCTTCTCAATGGATTCAGAATTTGAAAATTCGAATCTTGAACATCAAGAAAATGAATTTTCGGCTCCAGATGCACCAAAATCCTACAGCAGGAAATACGAAAATTGGCCTACTGTCGATCCCAATGAGCGGATTTTATTCGATTTGCCAGATGGACCAATTTGGATGTGAAATTGGAAATTTTTAATAATTTTTTTTTTGAAAATTAACTTTTTCAATTTTTTCTAATTGTCCATTTTTTTCTAATTTTTTAATCTAATCGGTATTTTAACTATTCCCTGAGCTACTCATTTTTTCAAACTTTCTTGTTAATTCAAATGTTTTCTCTTTTTTTAACCTAATTCGATTTTAAAAAAATAATATTTAATCAAGAAATTTTTTTTTTCAAAATTGAGAAATTAATTGTATTTTTCCAAAATGTATACTTAATTTCAATTTTTGAAAATGAATTTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAAAGTTTTATTGGAGTTCTA</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAATTCTGAATCCATTG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TCCAAAGTTTTATTGGAGTTCTACAGACTCCAAAAATGCTCCAGAAGATGCTCCAGGATTTTCAGAAGGTATTAAATATTGAAAATCGGAAATATTAATTTTTTTAAATTTTCAGAATTCAAATCAGAATTCGATGCTTATCAGAAATTTCAAATGGAGCCAGAATTTCAAAATTCGAATGCTCAAGCTCCTGAAAATGAATTTTTGACTCCAGATGCTCCAAAATCCTTCTCAATGGATTCAGAATTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>TCCAAAGTTTTATTGGAGTTCTACAGACTCCAAAAATGCTCCAGAAGATGCTCCAGGATTTTCAGAAGGTATTAAATATTGAAAATCGGAAATATTAATTTTTTTAAATTTTCAGAATTCAAATCAGAATTCGATGCTTATCAGAAATTTCAAATGGAGCCAGAATTTCAAAATTCGAATKCTCAAGCTCCTGAAAATGAATTTTTGACTCCAGATGCTCCAAAATCCTTCTCAATGGATTCAGAATTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34362</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>401669</contig_pos>
        <strand>+</strand>
        <context>AGTCATGGAA[A/T]TYGTTGACTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAA</left_flank>
        <right_flank>TTGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGACTTAATTTTCAACTAATGATTGTTCAAAAAATATAATAATTTAAAATCTGAATAGAGAAAAAAGGGACCTACCCTAAAGGCAACCATTTCATTTTCCATTGCAGATTGTGAACCGTCATTTCTGACTTTATAAAAATCTCCAAGAAAATAAAACGAACATCTGTCACCTTTGAAATAAACCATATAACAGTTCAGAGCTTCAAAATTTTCCATGCAACTTTCGTGACACTCCTCCCAACTTATACCAGTGATAACTTTGTACGGATAGCTGTCTTTCAAATCTGGTGCTCCATTTATAGCTACCATTTTGTATGTTGCTTGTGATAGAGGTGAAAATAGAAGAAAAATGAGAAGAATCGGGAGAAACTTCATGTTGGATGAAACTCTCTGCTTTTGAAAAATAAAGAAGTGAAAAAAAAACTGAAGGTGTCAATTTACACATAAATCAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAATTGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATATACATGTTCAGAAAGATTCAAGTTCACATGAATCGCGGGCGAAAATGTTTAGATTTCTAAAAAATTGGGATCATGCAGATATTCAAGTTTGGGACTTCCTGAAAATAGCAATATTAATGTGGCTGTCCAAAATAGAGAATTAATTGTTGTAGAGTACTGAAAAAAAAAAATCTAGAATTACAATTTCTTGGAAATTGACAACCTGAAATATCTGAATAATCACTTAGTACATATCCAGTTGGTCTGGAAACTTTAGAGATTGTAAATAAAATATGGGACGGGTAATTAACAATATTCTAGAGAACATTTCTGATTACTTTACAAGACTCCGGTTTTAGAAAATCGTAGATGTTTGAATTGAAAACCGAAAAGTTCCTAATTTTTGTTTTTTACAAAAGTGTCCAAAGTTCGCATTTTGCACTCCAT</canonical>
            <polymorphic>AGACTTAATTTTCAACTAATGATTGTTCAAAAAATATAATAATTTAAAATCTGAATAGAGAAAAAAGGGACCTACCCTAAAGGCAACCATTTCATTTTCCATTGCAGATTGTGAACCGTCATTTCTGACTTTATAAAAATCTCCAAGAAAATAAAACGAACATCTGTCACCTTTGAAATAAACCATATAACAGTTCAGAGCTTCAAAATTTTCCATGCAACTTTCGTGACACTCCTCCCAACTTATACCAGTGATAACTTTGTACGGATAGCTGTCTTTCAAATCTGGTGCTCCATTTATAGCTACCATTTTGTATGTTGCTTGTGATAGAGGTGAAAATAGAAGAAAAATGAGAAGAATCGGGAGAAACTTCATGTTGGATGAAACTCTCTGCTTTTGAAAAATAAAGAAGTGAAAAAAAAACTGAAGGTGTCAATTTACACATAAATCAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAWTTGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATATACATGTTCAGAAAGATTCAAGTTCACATGAATCGCGGGCGAAAATGTTTAGATTTCTAAAAAATTGGGATCATGCAGATATTCAAGTTTGGGACTTCCTGAAAATAGCAATATTAATGTGGCTGTCCAAAATAGAGAATTAATTGTTGTAGAGTACTGAAAAAAAAAAATCTAGAATTACAATTTCTTGGAAATTGACAACCTGAAATATCTGAATAATCACTTAGTACATATCCAGTTGGTCTGGAAACTTTAGAGATTGTAAATAAAATATGGGACGGGTAATTAACAATATTCTAGAGAACATTTCTGATTACTTTACAAGACTCCGGTTTTAGAAAATCGTAGATGTTTGAATTGAAAACCGAAAAGTTCCTAATTTTTGTTTTTTACAAAAGTGTCCAAAGTTCGCATTTTGCACTCCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>228 166 138 91 75 72 49 41 34 34 23 22 11 6 6 4</canonical_bands>
                <polymorphic_bands>228 166 161 91 75 72 49 41 34 34 22 11 6 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTCAATTTACACATAAATCAGTTT</pcr_primer_p1>
		<pcr_primer_p2>AACTTGAATATCTGCATGATCC</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>TGTCAATTTACACATAAATCAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAATTGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATATACATGTTCAGAAAGATTCAAGTTCACATGAATCGCGGGCGAAAATGTTTAGATTTCTAAAAAATTGGGATCATGCAGATATTCAAGTT</canonical_amplicon>
		<polymorphic_amplicon>TGTCAATTTACACATAAATCAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAWTTGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATATACATGTTCAGAAAGATTCAAGTTCACATGAATCGCGGGCGAAAATGTTTAGATTTCTAAAAAATTGGGATCATGCAGATATTCAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34363</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>401671</contig_pos>
        <strand>+</strand>
        <context>TCATGGAAWT[C/T]GTTGACTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAAT</left_flank>
        <right_flank>GTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTAATTTTCAACTAATGATTGTTCAAAAAATATAATAATTTAAAATCTGAATAGAGAAAAAAGGGACCTACCCTAAAGGCAACCATTTCATTTTCCATTGCAGATTGTGAACCGTCATTTCTGACTTTATAAAAATCTCCAAGAAAATAAAACGAACATCTGTCACCTTTGAAATAAACCATATAACAGTTCAGAGCTTCAAAATTTTCCATGCAACTTTCGTGACACTCCTCCCAACTTATACCAGTGATAACTTTGTACGGATAGCTGTCTTTCAAATCTGGTGCTCCATTTATAGCTACCATTTTGTATGTTGCTTGTGATAGAGGTGAAAATAGAAGAAAAATGAGAAGAATCGGGAGAAACTTCATGTTGGATGAAACTCTCTGCTTTTGAAAAATAAAGAAGTGAAAAAAAAACTGAAGGTGTCAATTTACACATAAATCAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAATTGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATATACATGTTCAGAAAGATTCAAGTTCACATGAATCGCGGGCGAAAATGTTTAGATTTCTAAAAAATTGGGATCATGCAGATATTCAAGTTTGGGACTTCCTGAAAATAGCAATATTAATGTGGCTGTCCAAAATAGAGAATTAATTGTTGTAGAGTACTGAAAAAAAAAAATCTAGAATTACAATTTCTTGGAAATTGACAACCTGAAATATCTGAATAATCACTTAGTACATATCCAGTTGGTCTGGAAACTTTAGAGATTGTAAATAAAATATGGGACGGGTAATTAACAATATTCTAGAGAACATTTCTGATTACTTTACAAGACTCCGGTTTTAGAAAATCGTAGATGTTTGAATTGAAAACCGAAAAGTTCCTAATTTTTGTTTTTTACAAAAGTGTCCAAAGTTCGCATTTTGCACTCCATAT</canonical>
            <polymorphic>ACTTAATTTTCAACTAATGATTGTTCAAAAAATATAATAATTTAAAATCTGAATAGAGAAAAAAGGGACCTACCCTAAAGGCAACCATTTCATTTTCCATTGCAGATTGTGAACCGTCATTTCTGACTTTATAAAAATCTCCAAGAAAATAAAACGAACATCTGTCACCTTTGAAATAAACCATATAACAGTTCAGAGCTTCAAAATTTTCCATGCAACTTTCGTGACACTCCTCCCAACTTATACCAGTGATAACTTTGTACGGATAGCTGTCTTTCAAATCTGGTGCTCCATTTATAGCTACCATTTTGTATGTTGCTTGTGATAGAGGTGAAAATAGAAGAAAAATGAGAAGAATCGGGAGAAACTTCATGTTGGATGAAACTCTCTGCTTTTGAAAAATAAAGAAGTGAAAAAAAAACTGAAGGTGTCAATTTACACATAAATCAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAATYGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATATACATGTTCAGAAAGATTCAAGTTCACATGAATCGCGGGCGAAAATGTTTAGATTTCTAAAAAATTGGGATCATGCAGATATTCAAGTTTGGGACTTCCTGAAAATAGCAATATTAATGTGGCTGTCCAAAATAGAGAATTAATTGTTGTAGAGTACTGAAAAAAAAAAATCTAGAATTACAATTTCTTGGAAATTGACAACCTGAAATATCTGAATAATCACTTAGTACATATCCAGTTGGTCTGGAAACTTTAGAGATTGTAAATAAAATATGGGACGGGTAATTAACAATATTCTAGAGAACATTTCTGATTACTTTACAAGACTCCGGTTTTAGAAAATCGTAGATGTTTGAATTGAAAACCGAAAAGTTCCTAATTTTTGTTTTTTACAAAAGTGTCCAAAGTTCGCATTTTGCACTCCATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>228 166 138 91 75 72 51 41 34 34 23 22 11 6 4 4</canonical_bands>
                <polymorphic_bands>228 166 161 91 75 72 51 41 34 34 22 11 6 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTCAATTTACACATAAATCAGTTT</pcr_primer_p1>
		<pcr_primer_p2>AACTTGAATATCTGCATGATCC</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>TGTCAATTTACACATAAATCAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAATTGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATATACATGTTCAGAAAGATTCAAGTTCACATGAATCGCGGGCGAAAATGTTTAGATTTCTAAAAAATTGGGATCATGCAGATATTCAAGTT</canonical_amplicon>
		<polymorphic_amplicon>TGTCAATTTACACATAAATCAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAATYGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATATACATGTTCAGAAAGATTCAAGTTCACATGAATCGCGGGCGAAAATGTTTAGATTTCTAAAAAATTGGGATCATGCAGATATTCAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34364</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>401744</contig_pos>
        <strand>+</strand>
        <context>TAGGACTATA[C/T]ACATGTTCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATA</left_flank>
        <right_flank>ACATGTTCAGAAAGATTCAAGTTCACATGAATCGCGGGCGAAAATGTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTAAAGGCAACCATTTCATTTTCCATTGCAGATTGTGAACCGTCATTTCTGACTTTATAAAAATCTCCAAGAAAATAAAACGAACATCTGTCACCTTTGAAATAAACCATATAACAGTTCAGAGCTTCAAAATTTTCCATGCAACTTTCGTGACACTCCTCCCAACTTATACCAGTGATAACTTTGTACGGATAGCTGTCTTTCAAATCTGGTGCTCCATTTATAGCTACCATTTTGTATGTTGCTTGTGATAGAGGTGAAAATAGAAGAAAAATGAGAAGAATCGGGAGAAACTTCATGTTGGATGAAACTCTCTGCTTTTGAAAAATAAAGAAGTGAAAAAAAAACTGAAGGTGTCAATTTACACATAAATCAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAATTGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATATACATGTTCAGAAAGATTCAAGTTCACATGAATCGCGGGCGAAAATGTTTAGATTTCTAAAAAATTGGGATCATGCAGATATTCAAGTTTGGGACTTCCTGAAAATAGCAATATTAATGTGGCTGTCCAAAATAGAGAATTAATTGTTGTAGAGTACTGAAAAAAAAAAATCTAGAATTACAATTTCTTGGAAATTGACAACCTGAAATATCTGAATAATCACTTAGTACATATCCAGTTGGTCTGGAAACTTTAGAGATTGTAAATAAAATATGGGACGGGTAATTAACAATATTCTAGAGAACATTTCTGATTACTTTACAAGACTCCGGTTTTAGAAAATCGTAGATGTTTGAATTGAAAACCGAAAAGTTCCTAATTTTTGTTTTTTACAAAAGTGTCCAAAGTTCGCATTTTGCACTCCATATTCGGTTTTTATTCCAAAGTATGGATCCCGGATTCACTTTTGAAAAAAAAATCAATGAAAAAATATGTATGTTT</canonical>
            <polymorphic>CCTAAAGGCAACCATTTCATTTTCCATTGCAGATTGTGAACCGTCATTTCTGACTTTATAAAAATCTCCAAGAAAATAAAACGAACATCTGTCACCTTTGAAATAAACCATATAACAGTTCAGAGCTTCAAAATTTTCCATGCAACTTTCGTGACACTCCTCCCAACTTATACCAGTGATAACTTTGTACGGATAGCTGTCTTTCAAATCTGGTGCTCCATTTATAGCTACCATTTTGTATGTTGCTTGTGATAGAGGTGAAAATAGAAGAAAAATGAGAAGAATCGGGAGAAACTTCATGTTGGATGAAACTCTCTGCTTTTGAAAAATAAAGAAGTGAAAAAAAAACTGAAGGTGTCAATTTACACATAAATCAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAATTGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATAYACATGTTCAGAAAGATTCAAGTTCACATGAATCGCGGGCGAAAATGTTTAGATTTCTAAAAAATTGGGATCATGCAGATATTCAAGTTTGGGACTTCCTGAAAATAGCAATATTAATGTGGCTGTCCAAAATAGAGAATTAATTGTTGTAGAGTACTGAAAAAAAAAAATCTAGAATTACAATTTCTTGGAAATTGACAACCTGAAATATCTGAATAATCACTTAGTACATATCCAGTTGGTCTGGAAACTTTAGAGATTGTAAATAAAATATGGGACGGGTAATTAACAATATTCTAGAGAACATTTCTGATTACTTTACAAGACTCCGGTTTTAGAAAATCGTAGATGTTTGAATTGAAAACCGAAAAGTTCCTAATTTTTGTTTTTTACAAAAGTGTCCAAAGTTCGCATTTTGCACTCCATATTCGGTTTTTATTCCAAAGTATGGATCCCGGATTCACTTTTGAAAAAAAAATCAATGAAAAAATATGTATGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCAATTTACACATAAATCAGTTT</pcr_primer_p1>
		<pcr_primer_p2>AACTTGAATATCTGCATGATCC</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>TGTCAATTTACACATAAATCAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAATTGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATATACATGTTCAGAAAGATTCAAGTTCACATGAATCGCGGGCGAAAATGTTTAGATTTCTAAAAAATTGGGATCATGCAGATATTCAAGTT</canonical_amplicon>
		<polymorphic_amplicon>TGTCAATTTACACATAAATCAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAATTGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATAYACATGTTCAGAAAGATTCAAGTTCACATGAATCGCGGGCGAAAATGTTTAGATTTCTAAAAAATTGGGATCATGCAGATATTCAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34365</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>401760</contig_pos>
        <strand>+</strand>
        <context>TTCAGAAAGA[C/T]TCAAGTTCWC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAGCGGGAGAAAAAAGACGAAACTAGGACTATATACATGTTCAGAAAGA</left_flank>
        <right_flank>TCAAGTTCACATGAATCGCGGGCGAAAATGTTTAGATTTCTAAAAAATTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATTTTCCATTGCAGATTGTGAACCGTCATTTCTGACTTTATAAAAATCTCCAAGAAAATAAAACGAACATCTGTCACCTTTGAAATAAACCATATAACAGTTCAGAGCTTCAAAATTTTCCATGCAACTTTCGTGACACTCCTCCCAACTTATACCAGTGATAACTTTGTACGGATAGCTGTCTTTCAAATCTGGTGCTCCATTTATAGCTACCATTTTGTATGTTGCTTGTGATAGAGGTGAAAATAGAAGAAAAATGAGAAGAATCGGGAGAAACTTCATGTTGGATGAAACTCTCTGCTTTTGAAAAATAAAGAAGTGAAAAAAAAACTGAAGGTGTCAATTTACACATAAATCAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAATTGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATATACATGTTCAGAAAGATTCAAGTTCACATGAATCGCGGGCGAAAATGTTTAGATTTCTAAAAAATTGGGATCATGCAGATATTCAAGTTTGGGACTTCCTGAAAATAGCAATATTAATGTGGCTGTCCAAAATAGAGAATTAATTGTTGTAGAGTACTGAAAAAAAAAAATCTAGAATTACAATTTCTTGGAAATTGACAACCTGAAATATCTGAATAATCACTTAGTACATATCCAGTTGGTCTGGAAACTTTAGAGATTGTAAATAAAATATGGGACGGGTAATTAACAATATTCTAGAGAACATTTCTGATTACTTTACAAGACTCCGGTTTTAGAAAATCGTAGATGTTTGAATTGAAAACCGAAAAGTTCCTAATTTTTGTTTTTTACAAAAGTGTCCAAAGTTCGCATTTTGCACTCCATATTCGGTTTTTATTCCAAAGTATGGATCCCGGATTCACTTTTGAAAAAAAAATCAATGAAAAAATATGTATGTTTTTTAAATAAATTTTTA</canonical>
            <polymorphic>TCATTTTCCATTGCAGATTGTGAACCGTCATTTCTGACTTTATAAAAATCTCCAAGAAAATAAAACGAACATCTGTCACCTTTGAAATAAACCATATAACAGTTCAGAGCTTCAAAATTTTCCATGCAACTTTCGTGACACTCCTCCCAACTTATACCAGTGATAACTTTGTACGGATAGCTGTCTTTCAAATCTGGTGCTCCATTTATAGCTACCATTTTGTATGTTGCTTGTGATAGAGGTGAAAATAGAAGAAAAATGAGAAGAATCGGGAGAAACTTCATGTTGGATGAAACTCTCTGCTTTTGAAAAATAAAGAAGTGAAAAAAAAACTGAAGGTGTCAATTTACACATAAATCAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAATTGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATATACATGTTCAGAAAGAYTCAAGTTCACATGAATCGCGGGCGAAAATGTTTAGATTTCTAAAAAATTGGGATCATGCAGATATTCAAGTTTGGGACTTCCTGAAAATAGCAATATTAATGTGGCTGTCCAAAATAGAGAATTAATTGTTGTAGAGTACTGAAAAAAAAAAATCTAGAATTACAATTTCTTGGAAATTGACAACCTGAAATATCTGAATAATCACTTAGTACATATCCAGTTGGTCTGGAAACTTTAGAGATTGTAAATAAAATATGGGACGGGTAATTAACAATATTCTAGAGAACATTTCTGATTACTTTACAAGACTCCGGTTTTAGAAAATCGTAGATGTTTGAATTGAAAACCGAAAAGTTCCTAATTTTTGTTTTTTACAAAAGTGTCCAAAGTTCGCATTTTGCACTCCATATTCGGTTTTTATTCCAAAGTATGGATCCCGGATTCACTTTTGAAAAAAAAATCAATGAAAAAATATGTATGTTTTTTAAATAAATTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>428 266 232 59 15</canonical_bands>
                <polymorphic_bands>428 266 247 59</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTCAATTTACACATAAATCAGTTT</pcr_primer_p1>
		<pcr_primer_p2>AACTTGAATATCTGCATGATCC</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>TGTCAATTTACACATAAATCAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAATTGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATATACATGTTCAGAAAGATTCAAGTTCACATGAATCGCGGGCGAAAATGTTTAGATTTCTAAAAAATTGGGATCATGCAGATATTCAAGTT</canonical_amplicon>
		<polymorphic_amplicon>TGTCAATTTACACATAAATCAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAATTGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATATACATGTTCAGAAAGAYTCAAGTTCACATGAATCGCGGGCGAAAATGTTTAGATTTCTAAAAAATTGGGATCATGCAGATATTCAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34366</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>401769</contig_pos>
        <strand>+</strand>
        <context>AYTCAAGTTC[A/T]CATGAATCGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAAAAGACGAAACTAGGACTATATACATGTTCAGAAAGATTCAAGTTC</left_flank>
        <right_flank>CATGAATCGCGGGCGAAAATGTTTAGATTTCTAAAAAATTGGGATCATGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGCAGATTGTGAACCGTCATTTCTGACTTTATAAAAATCTCCAAGAAAATAAAACGAACATCTGTCACCTTTGAAATAAACCATATAACAGTTCAGAGCTTCAAAATTTTCCATGCAACTTTCGTGACACTCCTCCCAACTTATACCAGTGATAACTTTGTACGGATAGCTGTCTTTCAAATCTGGTGCTCCATTTATAGCTACCATTTTGTATGTTGCTTGTGATAGAGGTGAAAATAGAAGAAAAATGAGAAGAATCGGGAGAAACTTCATGTTGGATGAAACTCTCTGCTTTTGAAAAATAAAGAAGTGAAAAAAAAACTGAAGGTGTCAATTTACACATAAATCAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAATTGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATATACATGTTCAGAAAGATTCAAGTTCACATGAATCGCGGGCGAAAATGTTTAGATTTCTAAAAAATTGGGATCATGCAGATATTCAAGTTTGGGACTTCCTGAAAATAGCAATATTAATGTGGCTGTCCAAAATAGAGAATTAATTGTTGTAGAGTACTGAAAAAAAAAAATCTAGAATTACAATTTCTTGGAAATTGACAACCTGAAATATCTGAATAATCACTTAGTACATATCCAGTTGGTCTGGAAACTTTAGAGATTGTAAATAAAATATGGGACGGGTAATTAACAATATTCTAGAGAACATTTCTGATTACTTTACAAGACTCCGGTTTTAGAAAATCGTAGATGTTTGAATTGAAAACCGAAAAGTTCCTAATTTTTGTTTTTTACAAAAGTGTCCAAAGTTCGCATTTTGCACTCCATATTCGGTTTTTATTCCAAAGTATGGATCCCGGATTCACTTTTGAAAAAAAAATCAATGAAAAAATATGTATGTTTTTTAAATAAATTTTTATTCGCAGTT</canonical>
            <polymorphic>ATTGCAGATTGTGAACCGTCATTTCTGACTTTATAAAAATCTCCAAGAAAATAAAACGAACATCTGTCACCTTTGAAATAAACCATATAACAGTTCAGAGCTTCAAAATTTTCCATGCAACTTTCGTGACACTCCTCCCAACTTATACCAGTGATAACTTTGTACGGATAGCTGTCTTTCAAATCTGGTGCTCCATTTATAGCTACCATTTTGTATGTTGCTTGTGATAGAGGTGAAAATAGAAGAAAAATGAGAAGAATCGGGAGAAACTTCATGTTGGATGAAACTCTCTGCTTTTGAAAAATAAAGAAGTGAAAAAAAAACTGAAGGTGTCAATTTACACATAAATCAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAATTGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATATACATGTTCAGAAAGATTCAAGTTCWCATGAATCGCGGGCGAAAATGTTTAGATTTCTAAAAAATTGGGATCATGCAGATATTCAAGTTTGGGACTTCCTGAAAATAGCAATATTAATGTGGCTGTCCAAAATAGAGAATTAATTGTTGTAGAGTACTGAAAAAAAAAAATCTAGAATTACAATTTCTTGGAAATTGACAACCTGAAATATCTGAATAATCACTTAGTACATATCCAGTTGGTCTGGAAACTTTAGAGATTGTAAATAAAATATGGGACGGGTAATTAACAATATTCTAGAGAACATTTCTGATTACTTTACAAGACTCCGGTTTTAGAAAATCGTAGATGTTTGAATTGAAAACCGAAAAGTTCCTAATTTTTGTTTTTTACAAAAGTGTCCAAAGTTCGCATTTTGCACTCCATATTCGGTTTTTATTCCAAAGTATGGATCCCGGATTCACTTTTGAAAAAAAAATCAATGAAAAAATATGTATGTTTTTTAAATAAATTTTTATTCGCAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>178 135 101 95 79 63 59 56 43 37 36 23 22 20 18 13 10 9 3</canonical_bands>
                <polymorphic_bands>230 178 101 79 63 59 56 43 37 36 23 22 20 18 13 10 9 3</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 392 93 13</canonical_bands>
                <polymorphic_bands>595 392 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTCAATTTACACATAAATCAGTTT</pcr_primer_p1>
		<pcr_primer_p2>AACTTGAATATCTGCATGATCC</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>TGTCAATTTACACATAAATCAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAATTGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATATACATGTTCAGAAAGATTCAAGTTCACATGAATCGCGGGCGAAAATGTTTAGATTTCTAAAAAATTGGGATCATGCAGATATTCAAGTT</canonical_amplicon>
		<polymorphic_amplicon>TGTCAATTTACACATAAATCAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAATTGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATATACATGTTCAGAAAGATTCAAGTTCWCATGAATCGCGGGCGAAAATGTTTAGATTTCTAAAAAATTGGGATCATGCAGATATTCAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34367</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>401800</contig_pos>
        <strand>+</strand>
        <context>GTTTAGATTT[C/T]TAAAAAATTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAGAAAGATTCAAGTTCACATGAATCGCGGGCGAAAATGTTTAGATTT</left_flank>
        <right_flank>TAAAAAATTGGGATCATGCAGATATTCAAGTTTGGGACTTCCTGAAAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAAAAATCTCCAAGAAAATAAAACGAACATCTGTCACCTTTGAAATAAACCATATAACAGTTCAGAGCTTCAAAATTTTCCATGCAACTTTCGTGACACTCCTCCCAACTTATACCAGTGATAACTTTGTACGGATAGCTGTCTTTCAAATCTGGTGCTCCATTTATAGCTACCATTTTGTATGTTGCTTGTGATAGAGGTGAAAATAGAAGAAAAATGAGAAGAATCGGGAGAAACTTCATGTTGGATGAAACTCTCTGCTTTTGAAAAATAAAGAAGTGAAAAAAAAACTGAAGGTGTCAATTTACACATAAATCAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAATTGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATATACATGTTCAGAAAGATTCAAGTTCACATGAATCGCGGGCGAAAATGTTTAGATTTCTAAAAAATTGGGATCATGCAGATATTCAAGTTTGGGACTTCCTGAAAATAGCAATATTAATGTGGCTGTCCAAAATAGAGAATTAATTGTTGTAGAGTACTGAAAAAAAAAAATCTAGAATTACAATTTCTTGGAAATTGACAACCTGAAATATCTGAATAATCACTTAGTACATATCCAGTTGGTCTGGAAACTTTAGAGATTGTAAATAAAATATGGGACGGGTAATTAACAATATTCTAGAGAACATTTCTGATTACTTTACAAGACTCCGGTTTTAGAAAATCGTAGATGTTTGAATTGAAAACCGAAAAGTTCCTAATTTTTGTTTTTTACAAAAGTGTCCAAAGTTCGCATTTTGCACTCCATATTCGGTTTTTATTCCAAAGTATGGATCCCGGATTCACTTTTGAAAAAAAAATCAATGAAAAAATATGTATGTTTTTTAAATAAATTTTTATTCGCAGTTTGTAGTTATAAAACATGCAAATAATTATCCA</canonical>
            <polymorphic>TATAAAAATCTCCAAGAAAATAAAACGAACATCTGTCACCTTTGAAATAAACCATATAACAGTTCAGAGCTTCAAAATTTTCCATGCAACTTTCGTGACACTCCTCCCAACTTATACCAGTGATAACTTTGTACGGATAGCTGTCTTTCAAATCTGGTGCTCCATTTATAGCTACCATTTTGTATGTTGCTTGTGATAGAGGTGAAAATAGAAGAAAAATGAGAAGAATCGGGAGAAACTTCATGTTGGATGAAACTCTCTGCTTTTGAAAAATAAAGAAGTGAAAAAAAAACTGAAGGTGTCAATTTACACATAAATCAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAATTGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATATACATGTTCAGAAAGATTCAAGTTCACATGAATCGCGGGCGAAAATGTTTAGATTTYTAAAAAATTGGGATCATGCAGATATTCAAGTTTGGGACTTCCTGAAAATAGCAATATTAATGTGGCTGTCCAAAATAGAGAATTAATTGTTGTAGAGTACTGAAAAAAAAAAATCTAGAATTACAATTTCTTGGAAATTGACAACCTGAAATATCTGAATAATCACTTAGTACATATCCAGTTGGTCTGGAAACTTTAGAGATTGTAAATAAAATATGGGACGGGTAATTAACAATATTCTAGAGAACATTTCTGATTACTTTACAAGACTCCGGTTTTAGAAAATCGTAGATGTTTGAATTGAAAACCGAAAAGTTCCTAATTTTTGTTTTTTACAAAAGTGTCCAAAGTTCGCATTTTGCACTCCATATTCGGTTTTTATTCCAAAGTATGGATCCCGGATTCACTTTTGAAAAAAAAATCAATGAAAAAATATGTATGTTTTTTAAATAAATTTTTATTCGCAGTTTGTAGTTATAAAACATGCAAATAATTATCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCAGTTTTGTTAATGTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTATTTTGGACAGCCACATT</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>AAATCAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAATTGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATATACATGTTCAGAAAGATTCAAGTTCACATGAATCGCGGGCGAAAATGTTTAGATTTCTAAAAAATTGGGATCATGCAGATATTCAAGTTTGGGACTTCCTGAAAATAGCAATATTAATGTGGCTGTCCAAAATAG</canonical_amplicon>
		<polymorphic_amplicon>AAATCAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAATTGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATATACATGTTCAGAAAGATTCAAGTTCACATGAATCGCGGGCGAAAATGTTTAGATTTYTAAAAAATTGGGATCATGCAGATATTCAAGTTTGGGACTTCCTGAAAATAGCAATATTAATGTGGCTGTCCAAAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34368</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>401838</contig_pos>
        <strand>+</strand>
        <context>AAGTTTGGGA[C/G]TTMCTGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATGTTTAGATTTCTAAAAAATTGGGATCATGCAGATATTCAAGTTTGGGA</left_flank>
        <right_flank>TTCCTGAAAATAGCAATATTAATGTGGCTGTCCAAAATAGAGAATTAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTTGAAATAAACCATATAACAGTTCAGAGCTTCAAAATTTTCCATGCAACTTTCGTGACACTCCTCCCAACTTATACCAGTGATAACTTTGTACGGATAGCTGTCTTTCAAATCTGGTGCTCCATTTATAGCTACCATTTTGTATGTTGCTTGTGATAGAGGTGAAAATAGAAGAAAAATGAGAAGAATCGGGAGAAACTTCATGTTGGATGAAACTCTCTGCTTTTGAAAAATAAAGAAGTGAAAAAAAAACTGAAGGTGTCAATTTACACATAAATCAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAATTGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATATACATGTTCAGAAAGATTCAAGTTCACATGAATCGCGGGCGAAAATGTTTAGATTTCTAAAAAATTGGGATCATGCAGATATTCAAGTTTGGGACTTCCTGAAAATAGCAATATTAATGTGGCTGTCCAAAATAGAGAATTAATTGTTGTAGAGTACTGAAAAAAAAAAATCTAGAATTACAATTTCTTGGAAATTGACAACCTGAAATATCTGAATAATCACTTAGTACATATCCAGTTGGTCTGGAAACTTTAGAGATTGTAAATAAAATATGGGACGGGTAATTAACAATATTCTAGAGAACATTTCTGATTACTTTACAAGACTCCGGTTTTAGAAAATCGTAGATGTTTGAATTGAAAACCGAAAAGTTCCTAATTTTTGTTTTTTACAAAAGTGTCCAAAGTTCGCATTTTGCACTCCATATTCGGTTTTTATTCCAAAGTATGGATCCCGGATTCACTTTTGAAAAAAAAATCAATGAAAAAATATGTATGTTTTTTAAATAAATTTTTATTCGCAGTTTGTAGTTATAAAACATGCAAATAATTATCCATACTGATCAGGTTCATTCATACCACTGCACCTTTACTG</canonical>
            <polymorphic>CCTTTGAAATAAACCATATAACAGTTCAGAGCTTCAAAATTTTCCATGCAACTTTCGTGACACTCCTCCCAACTTATACCAGTGATAACTTTGTACGGATAGCTGTCTTTCAAATCTGGTGCTCCATTTATAGCTACCATTTTGTATGTTGCTTGTGATAGAGGTGAAAATAGAAGAAAAATGAGAAGAATCGGGAGAAACTTCATGTTGGATGAAACTCTCTGCTTTTGAAAAATAAAGAAGTGAAAAAAAAACTGAAGGTGTCAATTTACACATAAATCAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAATTGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATATACATGTTCAGAAAGATTCAAGTTCACATGAATCGCGGGCGAAAATGTTTAGATTTCTAAAAAATTGGGATCATGCAGATATTCAAGTTTGGGASTTCCTGAAAATAGCAATATTAATGTGGCTGTCCAAAATAGAGAATTAATTGTTGTAGAGTACTGAAAAAAAAAAATCTAGAATTACAATTTCTTGGAAATTGACAACCTGAAATATCTGAATAATCACTTAGTACATATCCAGTTGGTCTGGAAACTTTAGAGATTGTAAATAAAATATGGGACGGGTAATTAACAATATTCTAGAGAACATTTCTGATTACTTTACAAGACTCCGGTTTTAGAAAATCGTAGATGTTTGAATTGAAAACCGAAAAGTTCCTAATTTTTGTTTTTTACAAAAGTGTCCAAAGTTCGCATTTTGCACTCCATATTCGGTTTTTATTCCAAAGTATGGATCCCGGATTCACTTTTGAAAAAAAAATCAATGAAAAAATATGTATGTTTTTTAAATAAATTTTTATTCGCAGTTTGTAGTTATAAAACATGCAAATAATTATCCATACTGATCAGGTTCATTCATACCACTGCACCTTTACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATAAATCAGTTTTGTTAATGTGAA</pcr_primer_p1>
		<pcr_primer_p2>CAGATATTTCAGGTTGTCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>346</pcr_amplicon_size>
		<canonical_amplicon>CATAAATCAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAATTGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATATACATGTTCAGAAAGATTCAAGTTCACATGAATCGCGGGCGAAAATGTTTAGATTTCTAAAAAATTGGGATCATGCAGATATTCAAGTTTGGGACTTCCTGAAAATAGCAATATTAATGTGGCTGTCCAAAATAGAGAATTAATTGTTGTAGAGTACTGAAAAAAAAAAATCTAGAATTACAATTTCTTGGAAATTGACAACCTGAAATATCTG</canonical_amplicon>
		<polymorphic_amplicon>CATAAATCAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAATTGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATATACATGTTCAGAAAGATTCAAGTTCACATGAATCGCGGGCGAAAATGTTTAGATTTCTAAAAAATTGGGATCATGCAGATATTCAAGTTTGGGASTTCCTGAAAATAGCAATATTAATGTGGCTGTCCAAAATAGAGAATTAATTGTTGTAGAGTACTGAAAAAAAAAAATCTAGAATTACAATTTCTTGGAAATTGACAACCTGAAATATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34369</snp_id>
        <super_contig>c009001170.Contig3</super_contig>
        <contig_pos>401841</contig_pos>
        <strand>+</strand>
        <context>TTTGGGASTT[A/C]CTGAAAATAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTAGATTTCTAAAAAATTGGGATCATGCAGATATTCAAGTTTGGGACTT</left_flank>
        <right_flank>CTGAAAATAGCAATATTAATGTGGCTGTCCAAAATAGAGAATTAATTGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAAATAAACCATATAACAGTTCAGAGCTTCAAAATTTTCCATGCAACTTTCGTGACACTCCTCCCAACTTATACCAGTGATAACTTTGTACGGATAGCTGTCTTTCAAATCTGGTGCTCCATTTATAGCTACCATTTTGTATGTTGCTTGTGATAGAGGTGAAAATAGAAGAAAAATGAGAAGAATCGGGAGAAACTTCATGTTGGATGAAACTCTCTGCTTTTGAAAAATAAAGAAGTGAAAAAAAAACTGAAGGTGTCAATTTACACATAAATCAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAATTGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATATACATGTTCAGAAAGATTCAAGTTCACATGAATCGCGGGCGAAAATGTTTAGATTTCTAAAAAATTGGGATCATGCAGATATTCAAGTTTGGGACTTCCTGAAAATAGCAATATTAATGTGGCTGTCCAAAATAGAGAATTAATTGTTGTAGAGTACTGAAAAAAAAAAATCTAGAATTACAATTTCTTGGAAATTGACAACCTGAAATATCTGAATAATCACTTAGTACATATCCAGTTGGTCTGGAAACTTTAGAGATTGTAAATAAAATATGGGACGGGTAATTAACAATATTCTAGAGAACATTTCTGATTACTTTACAAGACTCCGGTTTTAGAAAATCGTAGATGTTTGAATTGAAAACCGAAAAGTTCCTAATTTTTGTTTTTTACAAAAGTGTCCAAAGTTCGCATTTTGCACTCCATATTCGGTTTTTATTCCAAAGTATGGATCCCGGATTCACTTTTGAAAAAAAAATCAATGAAAAAATATGTATGTTTTTTAAATAAATTTTTATTCGCAGTTTGTAGTTATAAAACATGCAAATAATTATCCATACTGATCAGGTTCATTCATACCACTGCACCTTTACTGTAT</canonical>
            <polymorphic>TTGAAATAAACCATATAACAGTTCAGAGCTTCAAAATTTTCCATGCAACTTTCGTGACACTCCTCCCAACTTATACCAGTGATAACTTTGTACGGATAGCTGTCTTTCAAATCTGGTGCTCCATTTATAGCTACCATTTTGTATGTTGCTTGTGATAGAGGTGAAAATAGAAGAAAAATGAGAAGAATCGGGAGAAACTTCATGTTGGATGAAACTCTCTGCTTTTGAAAAATAAAGAAGTGAAAAAAAAACTGAAGGTGTCAATTTACACATAAATCAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAATTGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATATACATGTTCAGAAAGATTCAAGTTCACATGAATCGCGGGCGAAAATGTTTAGATTTCTAAAAAATTGGGATCATGCAGATATTCAAGTTTGGGACTTMCTGAAAATAGCAATATTAATGTGGCTGTCCAAAATAGAGAATTAATTGTTGTAGAGTACTGAAAAAAAAAAATCTAGAATTACAATTTCTTGGAAATTGACAACCTGAAATATCTGAATAATCACTTAGTACATATCCAGTTGGTCTGGAAACTTTAGAGATTGTAAATAAAATATGGGACGGGTAATTAACAATATTCTAGAGAACATTTCTGATTACTTTACAAGACTCCGGTTTTAGAAAATCGTAGATGTTTGAATTGAAAACCGAAAAGTTCCTAATTTTTGTTTTTTACAAAAGTGTCCAAAGTTCGCATTTTGCACTCCATATTCGGTTTTTATTCCAAAGTATGGATCCCGGATTCACTTTTGAAAAAAAAATCAATGAAAAAATATGTATGTTTTTTAAATAAATTTTTATTCGCAGTTTGTAGTTATAAAACATGCAAATAATTATCCATACTGATCAGGTTCATTCATACCACTGCACCTTTACTGTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>311 301 136 74 72 53 53</canonical_bands>
                <polymorphic_bands>385 301 136 72 53 53</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATAAATCAGTTTTGTTAATGTGAA</pcr_primer_p1>
		<pcr_primer_p2>CAGATATTTCAGGTTGTCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>346</pcr_amplicon_size>
		<canonical_amplicon>CATAAATCAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAATTGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATATACATGTTCAGAAAGATTCAAGTTCACATGAATCGCGGGCGAAAATGTTTAGATTTCTAAAAAATTGGGATCATGCAGATATTCAAGTTTGGGACTTCCTGAAAATAGCAATATTAATGTGGCTGTCCAAAATAGAGAATTAATTGTTGTAGAGTACTGAAAAAAAAAAATCTAGAATTACAATTTCTTGGAAATTGACAACCTGAAATATCTG</canonical_amplicon>
		<polymorphic_amplicon>CATAAATCAGTTTTGTTAATGTGAAAAACTAAAAATTTTAGTCTCGTAGTCATGGAAATTGTTGACTTTCTGATTTTTTCTACTTTAGATTTTAGTTTGAAGCGGGAGAAAAAAGACGAAACTAGGACTATATACATGTTCAGAAAGATTCAAGTTCACATGAATCGCGGGCGAAAATGTTTAGATTTCTAAAAAATTGGGATCATGCAGATATTCAAGTTTGGGACTTMCTGAAAATAGCAATATTAATGTGGCTGTCCAAAATAGAGAATTAATTGTTGTAGAGTACTGAAAAAAAAAAATCTAGAATTACAATTTCTTGGAAATTGACAACCTGAAATATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34370</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>1674</contig_pos>
        <strand>+</strand>
        <context>CAAACGTACT[A/G]ATTATAGAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGAAAGACTCTAATAAAACATAAATAAATAAAAATAAACCAAACGTACT</left_flank>
        <right_flank>ATTATAGAACCATAAGAAGCAATAATATTTCAAATAGAGTACACATCTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAAACTACAATTAAAAGCATGGAATCAATCCATGTAACTAGCAAATAAACTATGTTGAAACAATAAATTATAACCTTGAAAAAAATTATTTATTAATCCTTAGAACCCTTTGATTGGAAGTCAAACATACTAATTTATACTAAAGAATCTTAAAGTTTTTACCTTTTTATTGACAATAAAATATACTTTATTATACTAAAACTTTTAATAAGAGAAAACCACCTCAAGGGTATGAACCTTATAGACTATATTATCCTATCTTACTAAAAACCATAACCATTTAATTTGCAATTAAATATACTAAAATTATACTATGATTTCTAATTTTTTAAACTAGTAGTACTAAAATAAATCTCAGCTTGATAACTGTGACCAAATACATAGTTTCTCATACAATACTCTGGACTTCTATTTGAATAATAATCTCTAATTACCAGACGATAACTAAAGAAAGACTCTAATAAAACATAAATAAATAAAAATAAACCAAACGTACTAATTATAGAACCATAAGAAGCAATAATATTTCAAATAGAGTACACATCTGGATAATCTAAATATTTACGTGGGAAACCGTGTAAACCTGCAAAATGTAAAGGAAAAAAAGTAAGATTTACTCCAATAAATAATAAAATAAAAACTGCAGACATCATCAATTTATCTAAAACATACCCTGTAATAAATCTTCATCACAATGTTACACCTGTAAAAATACCAAAAACTGCACCTAGTCTTAAAACATAATGAAAATGACTAACAACATAGTAAGTATCGTGAAGAATAATATCCAATCTAGAGTTTGATAAAACTACACCCGTTAAACCACCTAAAGTAAATAAAAAAATAAAACCTAGGACTCATAATAAAAGAGGATTAAAAATTATTTTTATACCAAACAAAGTGGCCAATCATCTAAAAACCTTAACCCCTGTCGGAACAGCAATTACCATAGTAGCAGCAGAAAAATAAGCACGTGAATCAAGATCTATACCAACAGT</canonical>
            <polymorphic>AATAAACTACAATTAAAAGCATGGAATCAATCCATGTAACTAGCAAATAAACTATGTTGAAACAATAAATTATAACCTTGAAAAAAATTATTTATTAATCCTTAGAACCCTTTGATTGGAAGTCAAACATACTAATTTATACTAAAGAATCTTAAAGTTTTTACCTTTTTATTGACAATAAAATATACTTTATTATACTAAAACTTTTAATAAGAGAAAACCACCTCAAGGGTATGAACCTTATAGACTATATTATCCTATCTTACTAAAAACCATAACCATTTAATTTGCAATTAAATATACTAAAATTATACTATGATTTCTAATTTTTTAAACTAGTAGTACTAAAATAAATCTCAGCTTGATAACTGTGACCAAATACATAGTTTCTCATACAATACTCTGGACTTCTATTTGAATAATAATCTCTAATTACCAGACGATAACTAAAGAAAGACTCTAATAAAACATAAATAAATAAAAATAAACCAAACGTACTRATTATAGAACCATAAGAAGCAATAATATTTCAAATAGAGTACACATCTGGATAATCTAAATATTTACGTGGGAAACCGTGTAAACCTGCAAAATGTAAAGGAAAAAAAGTAAGATTTACTCCAATAAATAATAAAATAAAAACTGCAGACATCATCAATTTATCTAAAACATACCCTGTAATAAATCTTCATCACAATGTTACACCTGTAAAAATACCAAAAACTGCACCTAGTCTTAAAACATAATGAAAATGACTAACAACATAGTAAGTATCGTGAAGAATAATATCCAATCTAGAGTTTGATAAAACTACACCCGTTAAACCACCTAAAGTAAATAAAAAAATAAAACCTAGGACTCATAATAAAAGAGGATTAAAAATTATTTTTATACCAAACAAAGTGGCCAATCATCTAAAAACCTTAACCCCTGTCGGAACAGCAATTACCATAGTAGCAGCAGAAAAATAAGCACGTGAATCAAGATCTATACCAACAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>224 157 151 106 69 63 57 57 48 18 18 15 10 7</canonical_bands>
                <polymorphic_bands>226 224 151 106 63 57 57 48 18 18 15 10 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCTTGATAACTGTGACCAAATA</pcr_primer_p1>
		<pcr_primer_p2>CCTTTACATTTTGCAGGTTTAC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AGCTTGATAACTGTGACCAAATACATAGTTTCTCATACAATACTCTGGACTTCTATTTGAATAATAATCTCTAATTACCAGACGATAACTAAAGAAAGACTCTAATAAAACATAAATAAATAAAAATAAACCAAACGTACTAATTATAGAACCATAAGAAGCAATAATATTTCAAATAGAGTACACATCTGGATAATCTAAATATTTACGTGGGAAACCGTGTAAACCTGCAAAATGTAAAGG</canonical_amplicon>
		<polymorphic_amplicon>AGCTTGATAACTGTGACCAAATACATAGTTTCTCATACAATACTCTGGACTTCTATTTGAATAATAATCTCTAATTACCAGACGATAACTAAAGAAAGACTCTAATAAAACATAAATAAATAAAAATAAACCAAACGTACTRATTATAGAACCATAAGAAGCAATAATATTTCAAATAGAGTACACATCTGGATAATCTAAATATTTACGTGGGAAACCGTGTAAACCTGCAAAATGTAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34371</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>2043</contig_pos>
        <strand>+</strand>
        <context>CTCATAATAA[A/G]RGAGGATTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTAAACCACCTAAAGTAAATAAAAAAATAAAACCTAGGACTCATAATAA</left_flank>
        <right_flank>AGAGGATTAAAAATTATTTTTATACCAAACAAAGTGGCCAATCATCTAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGACCAAATACATAGTTTCTCATACAATACTCTGGACTTCTATTTGAATAATAATCTCTAATTACCAGACGATAACTAAAGAAAGACTCTAATAAAACATAAATAAATAAAAATAAACCAAACGTACTAATTATAGAACCATAAGAAGCAATAATATTTCAAATAGAGTACACATCTGGATAATCTAAATATTTACGTGGGAAACCGTGTAAACCTGCAAAATGTAAAGGAAAAAAAGTAAGATTTACTCCAATAAATAATAAAATAAAAACTGCAGACATCATCAATTTATCTAAAACATACCCTGTAATAAATCTTCATCACAATGTTACACCTGTAAAAATACCAAAAACTGCACCTAGTCTTAAAACATAATGAAAATGACTAACAACATAGTAAGTATCGTGAAGAATAATATCCAATCTAGAGTTTGATAAAACTACACCCGTTAAACCACCTAAAGTAAATAAAAAAATAAAACCTAGGACTCATAATAAAAGAGGATTAAAAATTATTTTTATACCAAACAAAGTGGCCAATCATCTAAAAACCTTAACCCCTGTCGGAACAGCAATTACCATAGTAGCAGCAGAAAAATAAGCACGTGAATCAAGATCTATACCAACAGTATACATATGATGTGCCCAAACTACACAACCAATTAAACCAATTCTTAAAATAGCATAAACCATACCAAGAGCACCAAATACTTCCTTTTTACCAGTCAAATAAAGAGTAGACTGACTAATAATACCAAAAGCAGGTAAAATTAAAATATAAACTTCTGGATGACCAAAAAATCAAAATAAATGTTGATAAATAAGAGGATTACCACCAGTTCTTGGATCAAAGAAAGAGGTGTTTAAATTACGATCTGTTAATAACATTGTAATAGCACCTGCTAAAACTGGTAAAGACAAAACCAATAAAAACACAGTAACAAATACAGTTCAGACAAATAAACTCATATGTTCCAAAGAAATAGATCTACTACGTAA</canonical>
            <polymorphic>TGTGACCAAATACATAGTTTCTCATACAATACTCTGGACTTCTATTTGAATAATAATCTCTAATTACCAGACGATAACTAAAGAAAGACTCTAATAAAACATAAATAAATAAAAATAAACCAAACGTACTAATTATAGAACCATAAGAAGCAATAATATTTCAAATAGAGTACACATCTGGATAATCTAAATATTTACGTGGGAAACCGTGTAAACCTGCAAAATGTAAAGGAAAAAAAGTAAGATTTACTCCAATAAATAATAAAATAAAAACTGCAGACATCATCAATTTATCTAAAACATACCCTGTAATAAATCTTCATCACAATGTTACACCTGTAAAAATACCAAAAACTGCACCTAGTCTTAAAACATAATGAAAATGACTAACAACATAGTAAGTATCGTGAAGAATAATATCCAATCTAGAGTTTGATAAAACTACACCCGTTAAACCACCTAAAGTAAATAAAAAAATAAAACCTAGGACTCATAATAARAGAGGATTAAAAATTATTTTTATACCAAACAAAGTGGCCAATCATCTAAAAACCTTAACCCCTGTCGGAACAGCAATTACCATAGTAGCAGCAGAAAAATAAGCACGTGAATCAAGATCTATACCAACAGTATACATATGATGTGCCCAAACTACACAACCAATTAAACCAATTCTTAAAATAGCATAAACCATACCAAGAGCACCAAATACTTCCTTTTTACCAGTCAAATAAAGAGTAGACTGACTAATAATACCAAAAGCAGGTAAAATTAAAATATAAACTTCTGGATGACCAAAAAATCAAAATAAATGTTGATAAATAAGAGGATTACCACCAGTTCTTGGATCAAAGAAAGAGGTGTTTAAATTACGATCTGTTAATAACATTGTAATAGCACCTGCTAAAACTGGTAAAGACAAAACCAATAAAAACACAGTAACAAATACAGTTCAGACAAATAAACTCATATGTTCCAAAGAAATAGATCTACTACGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAACTGCACCTAGTCTTAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTGCTGCTACTATGGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAAACTGCACCTAGTCTTAAAACATAATGAAAATGACTAACAACATAGTAAGTATCGTGAAGAATAATATCCAATCTAGAGTTTGATAAAACTACACCCGTTAAACCACCTAAAGTAAATAAAAAAATAAAACCTAGGACTCATAATAAAAGAGGATTAAAAATTATTTTTATACCAAACAAAGTGGCCAATCATCTAAAAACCTTAACCCCTGTCGGAACAGCAATTACCATAGTAGCAGCAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>CAAAAACTGCACCTAGTCTTAAAACATAATGAAAATGACTAACAACATAGTAAGTATCGTGAAGAATAATATCCAATCTAGAGTTTGATAAAACTACACCCGTTAAACCACCTAAAGTAAATAAAAAAATAAAACCTAGGACTCATAATAARAGAGGATTAAAAATTATTTTTATACCAAACAAAGTGGCCAATCATCTAAAAACCTTAACCCCTGTCGGAACAGCAATTACCATAGTAGCAGCAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34372</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>2044</contig_pos>
        <strand>+</strand>
        <context>TCATAATAAR[A/G]GAGGATTAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAAACCACCTAAAGTAAATAAAAAAATAAAACCTAGGACTCATAATAAA</left_flank>
        <right_flank>GAGGATTAAAAATTATTTTTATACCAAACAAAGTGGCCAATCATCTAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGACCAAATACATAGTTTCTCATACAATACTCTGGACTTCTATTTGAATAATAATCTCTAATTACCAGACGATAACTAAAGAAAGACTCTAATAAAACATAAATAAATAAAAATAAACCAAACGTACTAATTATAGAACCATAAGAAGCAATAATATTTCAAATAGAGTACACATCTGGATAATCTAAATATTTACGTGGGAAACCGTGTAAACCTGCAAAATGTAAAGGAAAAAAAGTAAGATTTACTCCAATAAATAATAAAATAAAAACTGCAGACATCATCAATTTATCTAAAACATACCCTGTAATAAATCTTCATCACAATGTTACACCTGTAAAAATACCAAAAACTGCACCTAGTCTTAAAACATAATGAAAATGACTAACAACATAGTAAGTATCGTGAAGAATAATATCCAATCTAGAGTTTGATAAAACTACACCCGTTAAACCACCTAAAGTAAATAAAAAAATAAAACCTAGGACTCATAATAAAAGAGGATTAAAAATTATTTTTATACCAAACAAAGTGGCCAATCATCTAAAAACCTTAACCCCTGTCGGAACAGCAATTACCATAGTAGCAGCAGAAAAATAAGCACGTGAATCAAGATCTATACCAACAGTATACATATGATGTGCCCAAACTACACAACCAATTAAACCAATTCTTAAAATAGCATAAACCATACCAAGAGCACCAAATACTTCCTTTTTACCAGTCAAATAAAGAGTAGACTGACTAATAATACCAAAAGCAGGTAAAATTAAAATATAAACTTCTGGATGACCAAAAAATCAAAATAAATGTTGATAAATAAGAGGATTACCACCAGTTCTTGGATCAAAGAAAGAGGTGTTTAAATTACGATCTGTTAATAACATTGTAATAGCACCTGCTAAAACTGGTAAAGACAAAACCAATAAAAACACAGTAACAAATACAGTTCAGACAAATAAACTCATATGTTCCAAAGAAATAGATCTACTACGTAAA</canonical>
            <polymorphic>GTGACCAAATACATAGTTTCTCATACAATACTCTGGACTTCTATTTGAATAATAATCTCTAATTACCAGACGATAACTAAAGAAAGACTCTAATAAAACATAAATAAATAAAAATAAACCAAACGTACTAATTATAGAACCATAAGAAGCAATAATATTTCAAATAGAGTACACATCTGGATAATCTAAATATTTACGTGGGAAACCGTGTAAACCTGCAAAATGTAAAGGAAAAAAAGTAAGATTTACTCCAATAAATAATAAAATAAAAACTGCAGACATCATCAATTTATCTAAAACATACCCTGTAATAAATCTTCATCACAATGTTACACCTGTAAAAATACCAAAAACTGCACCTAGTCTTAAAACATAATGAAAATGACTAACAACATAGTAAGTATCGTGAAGAATAATATCCAATCTAGAGTTTGATAAAACTACACCCGTTAAACCACCTAAAGTAAATAAAAAAATAAAACCTAGGACTCATAATAAARGAGGATTAAAAATTATTTTTATACCAAACAAAGTGGCCAATCATCTAAAAACCTTAACCCCTGTCGGAACAGCAATTACCATAGTAGCAGCAGAAAAATAAGCACGTGAATCAAGATCTATACCAACAGTATACATATGATGTGCCCAAACTACACAACCAATTAAACCAATTCTTAAAATAGCATAAACCATACCAAGAGCACCAAATACTTCCTTTTTACCAGTCAAATAAAGAGTAGACTGACTAATAATACCAAAAGCAGGTAAAATTAAAATATAAACTTCTGGATGACCAAAAAATCAAAATAAATGTTGATAAATAAGAGGATTACCACCAGTTCTTGGATCAAAGAAAGAGGTGTTTAAATTACGATCTGTTAATAACATTGTAATAGCACCTGCTAAAACTGGTAAAGACAAAACCAATAAAAACACAGTAACAAATACAGTTCAGACAAATAAACTCATATGTTCCAAAGAAATAGATCTACTACGTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAACTGCACCTAGTCTTAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTGCTGCTACTATGGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAAACTGCACCTAGTCTTAAAACATAATGAAAATGACTAACAACATAGTAAGTATCGTGAAGAATAATATCCAATCTAGAGTTTGATAAAACTACACCCGTTAAACCACCTAAAGTAAATAAAAAAATAAAACCTAGGACTCATAATAAAAGAGGATTAAAAATTATTTTTATACCAAACAAAGTGGCCAATCATCTAAAAACCTTAACCCCTGTCGGAACAGCAATTACCATAGTAGCAGCAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>CAAAAACTGCACCTAGTCTTAAAACATAATGAAAATGACTAACAACATAGTAAGTATCGTGAAGAATAATATCCAATCTAGAGTTTGATAAAACTACACCCGTTAAACCACCTAAAGTAAATAAAAAAATAAAACCTAGGACTCATAATAAARGAGGATTAAAAATTATTTTTATACCAAACAAAGTGGCCAATCATCTAAAAACCTTAACCCCTGTCGGAACAGCAATTACCATAGTAGCAGCAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34373</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>3441</contig_pos>
        <strand></strand>
        <context>CTATTAGACA[A/G]AAAAACTACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAAAACTCAGAAAGAAAAGATAAAGAGGGTGGCACTCCACTATTAGACA</left_flank>
        <right_flank>AAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATC</right_flank>
        <qual_score>49</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAATAAAGAAAATCTAGTACCAACTATTCCCGATCATAAACCAAAGATAAAATAAAGGGTTCCAATGTCCTTATGATTAGATCTTTCTAACCAGACAGCTAAACCACCTTGATATTTTTTATAAAGATTAATTTAAAAGTTATACTTAAAATAACAATTTTACTTTTAAATTTAAAATGTTAACACATTATTAATAATAATGTATTAAAGACCAAAAAAAAAGAGATAAATCTCCAGATTACTAGTAAAACACACTCAGTCAGAATACATTGTATATTATTAGCACTAGCGGCGCTGAAAATCCTACATTTCAAGTATTAAAATTATAAAAACCTTTACCTATTAAAGAGCTAGTGATTAAAAACAAAGAATAGTAAAAAGAAACTACAAAATAAATAAAAATTATTAAAAATATTCTTTTTCCAATTAATAAACTATTTGAAATAACTAAAAACTCAGAAAGAAAAGATAAAGAGGGTGGCACTCCACTATTAGACAAAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTT</canonical>
            <polymorphic>TTAATAAAGAAAATCTAGTACCAACTATTCCCGATCATAAACCAAAGATAAAATAAAGGGTTCCAATGTCCTTATGATTAGATCTTTCTAACCAGACAGCTAAACCACCTTGATATTTTTTATAAAGATTAATTTAAAAGTTATACTTAAAATAACAATTTTACTTTTAAATTTAAAATGTTAACACATTATTAATAATAATGTATTAAAGACCAAAAAAAAAGAGATAAATCTCCAGATTACTAGTAAAACACACTCAGTCAGAATACATTGTATATTATTAGCACTAGCGGCGCTGAAAATCCTACATTTCAAGTATTAAAATTATAAAAACCTTTACCTATTAAAGAGCTAGTGATTAAAAACAAAGAATAGTAAAAAGAAACTACAAAATAAATAAAAATTATTAAAAATATTCTTTTTCCAATTAATAAACTATTTGAAATAACTAAAAACTCAGAAAGAAAAGATAAAGAGGGTGGCACTCCACTATTAGACARAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAAATAACTAAAAACTCAGAAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTATATTGGCACATGGTTATACA</pcr_primer_p2>
		<pcr_amplicon_size>207</pcr_amplicon_size>
		<canonical_amplicon>TTGAAATAACTAAAAACTCAGAAAGAAAAGATAAAGAGGGTGGCACTCCACTATTAGACAAAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAA</canonical_amplicon>
		<polymorphic_amplicon>TTGAAATAACTAAAAACTCAGAAAGAAAAGATAAAGAGGGTGGCACTCCACTATTAGACARAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34374</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>3482</contig_pos>
        <strand>+</strand>
        <context>TATTCTAGAA[C/T]TAAAAAATCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTAGACAAAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAA</left_flank>
        <right_flank>TAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAAGATAAAATAAAGGGTTCCAATGTCCTTATGATTAGATCTTTCTAACCAGACAGCTAAACCACCTTGATATTTTTTATAAAGATTAATTTAAAAGTTATACTTAAAATAACAATTTTACTTTTAAATTTAAAATGTTAACACATTATTAATAATAATGTATTAAAGACCAAAAAAAAAGAGATAAATCTCCAGATTACTAGTAAAACACACTCAGTCAGAATACATTGTATATTATTAGCACTAGCGGCGCTGAAAATCCTACATTTCAAGTATTAAAATTATAAAAACCTTTACCTATTAAAGAGCTAGTGATTAAAAACAAAGAATAGTAAAAAGAAACTACAAAATAAATAAAAATTATTAAAAATATTCTTTTTCCAATTAATAAACTATTTGAAATAACTAAAAACTCAGAAAGAAAAGATAAAGAGGGTGGCACTCCACTATTAGACAAAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAA</canonical>
            <polymorphic>CCAAAGATAAAATAAAGGGTTCCAATGTCCTTATGATTAGATCTTTCTAACCAGACAGCTAAACCACCTTGATATTTTTTATAAAGATTAATTTAAAAGTTATACTTAAAATAACAATTTTACTTTTAAATTTAAAATGTTAACACATTATTAATAATAATGTATTAAAGACCAAAAAAAAAGAGATAAATCTCCAGATTACTAGTAAAACACACTCAGTCAGAATACATTGTATATTATTAGCACTAGCGGCGCTGAAAATCCTACATTTCAAGTATTAAAATTATAAAAACCTTTACCTATTAAAGAGCTAGTGATTAAAAACAAAGAATAGTAAAAAGAAACTACAAAATAAATAAAAATTATTAAAAATATTCTTTTTCCAATTAATAAACTATTTGAAATAACTAAAAACTCAGAAAGAAAAGATAAAGAGGGTGGCACTCCACTATTAGACAAAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAAYTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGGCACTCCACTATTAGACA</pcr_primer_p1>
		<pcr_primer_p2>GCAGCTTATTCTTCAGTTACTCAT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>GTGGCACTCCACTATTAGACAAAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGC</canonical_amplicon>
		<polymorphic_amplicon>GTGGCACTCCACTATTAGACAAAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAAYTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34375</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>3526</contig_pos>
        <strand>+</strand>
        <context>TACCAGAAGT[A/G]TGATAAAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGT</left_flank>
        <right_flank>TGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTAACCAGACAGCTAAACCACCTTGATATTTTTTATAAAGATTAATTTAAAAGTTATACTTAAAATAACAATTTTACTTTTAAATTTAAAATGTTAACACATTATTAATAATAATGTATTAAAGACCAAAAAAAAAGAGATAAATCTCCAGATTACTAGTAAAACACACTCAGTCAGAATACATTGTATATTATTAGCACTAGCGGCGCTGAAAATCCTACATTTCAAGTATTAAAATTATAAAAACCTTTACCTATTAAAGAGCTAGTGATTAAAAACAAAGAATAGTAAAAAGAAACTACAAAATAAATAAAAATTATTAAAAATATTCTTTTTCCAATTAATAAACTATTTGAAATAACTAAAAACTCAGAAAGAAAAGATAAAGAGGGTGGCACTCCACTATTAGACAAAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAA</canonical>
            <polymorphic>TTCTAACCAGACAGCTAAACCACCTTGATATTTTTTATAAAGATTAATTTAAAAGTTATACTTAAAATAACAATTTTACTTTTAAATTTAAAATGTTAACACATTATTAATAATAATGTATTAAAGACCAAAAAAAAAGAGATAAATCTCCAGATTACTAGTAAAACACACTCAGTCAGAATACATTGTATATTATTAGCACTAGCGGCGCTGAAAATCCTACATTTCAAGTATTAAAATTATAAAAACCTTTACCTATTAAAGAGCTAGTGATTAAAAACAAAGAATAGTAAAAAGAAACTACAAAATAAATAAAAATTATTAAAAATATTCTTTTTCCAATTAATAAACTATTTGAAATAACTAAAAACTCAGAAAGAAAAGATAAAGAGGGTGGCACTCCACTATTAGACAAAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTRTGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTACTGAAAACAAAATTCCTA</pcr_primer_p1>
		<pcr_primer_p2>ATTCTAAGGCTTTAGCAGCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTRTGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34376</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>3541</contig_pos>
        <strand>+</strand>
        <context>AAAACTCACC[A/G]ATTAAATARA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACC</left_flank>
        <right_flank>ATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAACCACCTTGATATTTTTTATAAAGATTAATTTAAAAGTTATACTTAAAATAACAATTTTACTTTTAAATTTAAAATGTTAACACATTATTAATAATAATGTATTAAAGACCAAAAAAAAAGAGATAAATCTCCAGATTACTAGTAAAACACACTCAGTCAGAATACATTGTATATTATTAGCACTAGCGGCGCTGAAAATCCTACATTTCAAGTATTAAAATTATAAAAACCTTTACCTATTAAAGAGCTAGTGATTAAAAACAAAGAATAGTAAAAAGAAACTACAAAATAAATAAAAATTATTAAAAATATTCTTTTTCCAATTAATAAACTATTTGAAATAACTAAAAACTCAGAAAGAAAAGATAAAGAGGGTGGCACTCCACTATTAGACAAAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACAT</canonical>
            <polymorphic>TAAACCACCTTGATATTTTTTATAAAGATTAATTTAAAAGTTATACTTAAAATAACAATTTTACTTTTAAATTTAAAATGTTAACACATTATTAATAATAATGTATTAAAGACCAAAAAAAAAGAGATAAATCTCCAGATTACTAGTAAAACACACTCAGTCAGAATACATTGTATATTATTAGCACTAGCGGCGCTGAAAATCCTACATTTCAAGTATTAAAATTATAAAAACCTTTACCTATTAAAGAGCTAGTGATTAAAAACAAAGAATAGTAAAAAGAAACTACAAAATAAATAAAAATTATTAAAAATATTCTTTTTCCAATTAATAAACTATTTGAAATAACTAAAAACTCAGAAAGAAAAGATAAAGAGGGTGGCACTCCACTATTAGACAAAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCRATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTACTGAAAACAAAATTCCTA</pcr_primer_p1>
		<pcr_primer_p2>ATTCTAAGGCTTTAGCAGCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCRATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34377</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>3550</contig_pos>
        <strand></strand>
        <context>CRATTAAATA[A/G]AACATCAGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATA</left_flank>
        <right_flank>AACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCT</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGATATTTTTTATAAAGATTAATTTAAAAGTTATACTTAAAATAACAATTTTACTTTTAAATTTAAAATGTTAACACATTATTAATAATAATGTATTAAAGACCAAAAAAAAAGAGATAAATCTCCAGATTACTAGTAAAACACACTCAGTCAGAATACATTGTATATTATTAGCACTAGCGGCGCTGAAAATCCTACATTTCAAGTATTAAAATTATAAAAACCTTTACCTATTAAAGAGCTAGTGATTAAAAACAAAGAATAGTAAAAAGAAACTACAAAATAAATAAAAATTATTAAAAATATTCTTTTTCCAATTAATAAACTATTTGAAATAACTAAAAACTCAGAAAGAAAAGATAAAGAGGGTGGCACTCCACTATTAGACAAAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATA</canonical>
            <polymorphic>TTGATATTTTTTATAAAGATTAATTTAAAAGTTATACTTAAAATAACAATTTTACTTTTAAATTTAAAATGTTAACACATTATTAATAATAATGTATTAAAGACCAAAAAAAAAGAGATAAATCTCCAGATTACTAGTAAAACACACTCAGTCAGAATACATTGTATATTATTAGCACTAGCGGCGCTGAAAATCCTACATTTCAAGTATTAAAATTATAAAAACCTTTACCTATTAAAGAGCTAGTGATTAAAAACAAAGAATAGTAAAAAGAAACTACAAAATAAATAAAAATTATTAAAAATATTCTTTTTCCAATTAATAAACTATTTGAAATAACTAAAAACTCAGAAAGAAAAGATAAAGAGGGTGGCACTCCACTATTAGACAAAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATARAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTACTGAAAACAAAATTCCTA</pcr_primer_p1>
		<pcr_primer_p2>ATTCTAAGGCTTTAGCAGCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATARAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34378</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>3598</contig_pos>
        <strand>+</strand>
        <context>GTATAACTCT[A/G]STAATTTTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCT</left_flank>
        <right_flank>CTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTACTTTTAAATTTAAAATGTTAACACATTATTAATAATAATGTATTAAAGACCAAAAAAAAAGAGATAAATCTCCAGATTACTAGTAAAACACACTCAGTCAGAATACATTGTATATTATTAGCACTAGCGGCGCTGAAAATCCTACATTTCAAGTATTAAAATTATAAAAACCTTTACCTATTAAAGAGCTAGTGATTAAAAACAAAGAATAGTAAAAAGAAACTACAAAATAAATAAAAATTATTAAAAATATTCTTTTTCCAATTAATAAACTATTTGAAATAACTAAAAACTCAGAAAGAAAAGATAAAGAGGGTGGCACTCCACTATTAGACAAAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTAC</canonical>
            <polymorphic>ATTTTACTTTTAAATTTAAAATGTTAACACATTATTAATAATAATGTATTAAAGACCAAAAAAAAAGAGATAAATCTCCAGATTACTAGTAAAACACACTCAGTCAGAATACATTGTATATTATTAGCACTAGCGGCGCTGAAAATCCTACATTTCAAGTATTAAAATTATAAAAACCTTTACCTATTAAAGAGCTAGTGATTAAAAACAAAGAATAGTAAAAAGAAACTACAAAATAAATAAAAATTATTAAAAATATTCTTTTTCCAATTAATAAACTATTTGAAATAACTAAAAACTCAGAAAGAAAAGATAAAGAGGGTGGCACTCCACTATTAGACAAAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTRCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTACTGAAAACAAAATTCCTA</pcr_primer_p1>
		<pcr_primer_p2>ATTCTAAGGCTTTAGCAGCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTRCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34379</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>3599</contig_pos>
        <strand>+</strand>
        <context>TATAACTCTR[C/G]TAATTTTACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTG</left_flank>
        <right_flank>TAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTACTTTTAAATTTAAAATGTTAACACATTATTAATAATAATGTATTAAAGACCAAAAAAAAAGAGATAAATCTCCAGATTACTAGTAAAACACACTCAGTCAGAATACATTGTATATTATTAGCACTAGCGGCGCTGAAAATCCTACATTTCAAGTATTAAAATTATAAAAACCTTTACCTATTAAAGAGCTAGTGATTAAAAACAAAGAATAGTAAAAAGAAACTACAAAATAAATAAAAATTATTAAAAATATTCTTTTTCCAATTAATAAACTATTTGAAATAACTAAAAACTCAGAAAGAAAAGATAAAGAGGGTGGCACTCCACTATTAGACAAAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACT</canonical>
            <polymorphic>TTTTACTTTTAAATTTAAAATGTTAACACATTATTAATAATAATGTATTAAAGACCAAAAAAAAAGAGATAAATCTCCAGATTACTAGTAAAACACACTCAGTCAGAATACATTGTATATTATTAGCACTAGCGGCGCTGAAAATCCTACATTTCAAGTATTAAAATTATAAAAACCTTTACCTATTAAAGAGCTAGTGATTAAAAACAAAGAATAGTAAAAAGAAACTACAAAATAAATAAAAATTATTAAAAATATTCTTTTTCCAATTAATAAACTATTTGAAATAACTAAAAACTCAGAAAGAAAAGATAAAGAGGGTGGCACTCCACTATTAGACAAAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGSTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTACTGAAAACAAAATTCCTA</pcr_primer_p1>
		<pcr_primer_p2>ATTCTAAGGCTTTAGCAGCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGSTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34380</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>3634</contig_pos>
        <strand>+</strand>
        <context>AAACCAGGGA[C/T]AGTAGTAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGA</left_flank>
        <right_flank>AGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAATAATGTATTAAAGACCAAAAAAAAAGAGATAAATCTCCAGATTACTAGTAAAACACACTCAGTCAGAATACATTGTATATTATTAGCACTAGCGGCGCTGAAAATCCTACATTTCAAGTATTAAAATTATAAAAACCTTTACCTATTAAAGAGCTAGTGATTAAAAACAAAGAATAGTAAAAAGAAACTACAAAATAAATAAAAATTATTAAAAATATTCTTTTTCCAATTAATAAACTATTTGAAATAACTAAAAACTCAGAAAGAAAAGATAAAGAGGGTGGCACTCCACTATTAGACAAAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTA</canonical>
            <polymorphic>AATAATAATGTATTAAAGACCAAAAAAAAAGAGATAAATCTCCAGATTACTAGTAAAACACACTCAGTCAGAATACATTGTATATTATTAGCACTAGCGGCGCTGAAAATCCTACATTTCAAGTATTAAAATTATAAAAACCTTTACCTATTAAAGAGCTAGTGATTAAAAACAAAGAATAGTAAAAAGAAACTACAAAATAAATAAAAATTATTAAAAATATTCTTTTTCCAATTAATAAACTATTTGAAATAACTAAAAACTCAGAAAGAAAAGATAAAGAGGGTGGCACTCCACTATTAGACAAAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGAYAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACTACTGAAAACAAAATTCCTA</pcr_primer_p1>
		<pcr_primer_p2>ATTCTAAGGCTTTAGCAGCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGAYAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34381</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>3763</contig_pos>
        <strand></strand>
        <context>CATTATTATG[T/A]ACAAAACTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATG</left_flank>
        <right_flank>ACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTATAAAAACCTTTACCTATTAAAGAGCTAGTGATTAAAAACAAAGAATAGTAAAAAGAAACTACAAAATAAATAAAAATTATTAAAAATATTCTTTTTCCAATTAATAAACTATTTGAAATAACTAAAAACTCAGAAAGAAAAGATAAAGAGGGTGGCACTCCACTATTAGACAAAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAAT</canonical>
            <polymorphic>AATTATAAAAACCTTTACCTATTAAAGAGCTAGTGATTAAAAACAAAGAATAGTAAAAAGAAACTACAAAATAAATAAAAATTATTAAAAATATTCTTTTTCCAATTAATAAACTATTTGAAATAACTAAAAACTCAGAAAGAAAAGATAAAGAGGGTGGCACTCCACTATTAGACAAAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGWACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGTACA</site>
                <isoschizomers>
                    <enzyme>AauI</enzyme>
                    <enzyme>Bsp1407I</enzyme>
                    <enzyme>BsrGI</enzyme>
                    <enzyme>SspBI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 459 41</canonical_bands>
                <polymorphic_bands>541 459</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTGAAGAATAAGCTGCTAAAG</pcr_primer_p1>
		<pcr_primer_p2>GTTACCTAAGGCTCATGTTGA</pcr_primer_p2>
		<pcr_amplicon_size>220</pcr_amplicon_size>
		<canonical_amplicon>AACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAAC</canonical_amplicon>
		<polymorphic_amplicon>AACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGWACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34382</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>3802</contig_pos>
        <strand></strand>
        <context>AAAAACCAGC[T/C]GTACCCAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGC</left_flank>
        <right_flank>GTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACAAAGAATAGTAAAAAGAAACTACAAAATAAATAAAAATTATTAAAAATATTCTTTTTCCAATTAATAAACTATTTGAAATAACTAAAAACTCAGAAAGAAAAGATAAAGAGGGTGGCACTCCACTATTAGACAAAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAAC</canonical>
            <polymorphic>AAAACAAAGAATAGTAAAAAGAAACTACAAAATAAATAAAAATTATTAAAAATATTCTTTTTCCAATTAATAAACTATTTGAAATAACTAAAAACTCAGAAAGAAAAGATAAAGAGGGTGGCACTCCACTATTAGACAAAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCYGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>460 369 129 42</canonical_bands>
                <polymorphic_bands>460 369 171</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>436 369 120 23 19 12 12 9</canonical_bands>
                <polymorphic_bands>436 369 143 19 12 12 9</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTGAAGAATAAGCTGCTAAAG</pcr_primer_p1>
		<pcr_primer_p2>GTTACCTAAGGCTCATGTTGA</pcr_primer_p2>
		<pcr_amplicon_size>220</pcr_amplicon_size>
		<canonical_amplicon>AACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAAC</canonical_amplicon>
		<polymorphic_amplicon>AACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCYGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34383</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>3823</contig_pos>
        <strand></strand>
        <context>TTAATAAAAG[G/T]CCTGCTAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAG</left_flank>
        <right_flank>CCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTACAAAATAAATAAAAATTATTAAAAATATTCTTTTTCCAATTAATAAACTATTTGAAATAACTAAAAACTCAGAAAGAAAAGATAAAGAGGGTGGCACTCCACTATTAGACAAAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATT</canonical>
            <polymorphic>AAACTACAAAATAAATAAAAATTATTAAAAATATTCTTTTTCCAATTAATAAACTATTTGAAATAACTAAAAACTCAGAAAGAAAAGATAAAGAGGGTGGCACTCCACTATTAGACAAAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGKCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGGCCT</site>
                <isoschizomers>
                    <enzyme>AatI</enzyme>
                    <enzyme>Eco147I</enzyme>
                    <enzyme>PceI</enzyme>
                    <enzyme>SseBI</enzyme>
                    <enzyme>StuI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 469 31</canonical_bands>
                <polymorphic_bands>531 469</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>457 348 120 23 19 12 12 9</canonical_bands>
                <polymorphic_bands>457 348 120 42 12 12 9</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTGAAGAATAAGCTGCTAAAG</pcr_primer_p1>
		<pcr_primer_p2>GTTACCTAAGGCTCATGTTGA</pcr_primer_p2>
		<pcr_amplicon_size>220</pcr_amplicon_size>
		<canonical_amplicon>AACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAAC</canonical_amplicon>
		<polymorphic_amplicon>AACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGKCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34384</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>3880</contig_pos>
        <strand></strand>
        <context>TAGGTAACCA[T/C]AGATGtaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCA</left_flank>
        <right_flank>AGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAATAACTAAAAACTCAGAAAGAAAAGATAAAGAGGGTGGCACTCCACTATTAGACAAAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAA</canonical>
            <polymorphic>TTGAAATAACTAAAAACTCAGAAAGAAAAGATAAAGAGGGTGGCACTCCACTATTAGACAAAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCAYAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCAATTAAAATTCAAACATTAT</pcr_primer_p1>
		<pcr_primer_p2>GCTTTTTGTTCATTTCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>294</pcr_amplicon_size>
		<canonical_amplicon>GGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGC</canonical_amplicon>
		<polymorphic_amplicon>GGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCAYAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34385</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>3919</contig_pos>
        <strand></strand>
        <context>ttataaacct[T/C]aatcttaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCT</left_flank>
        <right_flank>AATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGGCACTCCACTATTAGACAAAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTAC</canonical>
            <polymorphic>GTGGCACTCCACTATTAGACAAAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTYAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>198 142 124 122 105 68 51 49 46 42 30 17 6</canonical_bands>
                <polymorphic_bands>198 142 124 122 111 68 51 49 46 42 30 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAACATGAGCCTTAGGTAAC</pcr_primer_p1>
		<pcr_primer_p2>AATTTTAGGTTATGGTTCACAAA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>CTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATT</canonical_amplicon>
		<polymorphic_amplicon>CTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTYAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34386</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>3936</contig_pos>
        <strand>+</strand>
        <context>aaaataaaaa[C/T]tatttCTCAR</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAA</left_flank>
        <right_flank>TATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACAAAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTA</canonical>
            <polymorphic>GACAAAAAAACTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAYTATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAACATGAGCCTTAGGTAAC</pcr_primer_p1>
		<pcr_primer_p2>AATTTTAGGTTATGGTTCACAAA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>CTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATT</canonical_amplicon>
		<polymorphic_amplicon>CTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAYTATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34387</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>3946</contig_pos>
        <strand></strand>
        <context>ytatttCTCA[G/A]GAGATRACAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCA</left_flank>
        <right_flank>GAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATAT</canonical>
            <polymorphic>CTACTGAAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCARGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>257 247 236 186 74</canonical_bands>
                <polymorphic_bands>321 257 236 186</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAACATGAGCCTTAGGTAAC</pcr_primer_p1>
		<pcr_primer_p2>AATTTTAGGTTATGGTTCACAAA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>CTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATT</canonical_amplicon>
		<polymorphic_amplicon>CTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCARGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34388</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>3952</contig_pos>
        <strand></strand>
        <context>CTCARGAGAT[A/G]ACAAAATTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGAT</left_flank>
        <right_flank>ACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACAC</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTT</canonical>
            <polymorphic>AAAACAAAATTCCTATAATTATTCTAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATRACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAACATGAGCCTTAGGTAAC</pcr_primer_p1>
		<pcr_primer_p2>AATTTTAGGTTATGGTTCACAAA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>CTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATT</canonical_amplicon>
		<polymorphic_amplicon>CTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATRACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34389</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>3976</contig_pos>
        <strand>+</strand>
        <context>AGGTAAACAC[C/T]AGTAAAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACAC</left_flank>
        <right_flank>AGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTA</canonical>
            <polymorphic>TAGAACTAAAAAATCTACTTATAAAATAAATTATACGTCTACCAGAAGTATGATAAAACTCACCGATTAAATAAAACATCAGTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACYAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAACATGAGCCTTAGGTAAC</pcr_primer_p1>
		<pcr_primer_p2>AATTTTAGGTTATGGTTCACAAA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>CTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATT</canonical_amplicon>
		<polymorphic_amplicon>CTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACYAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34390</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>4057</contig_pos>
        <strand></strand>
        <context>AATAAGAAGA[G/A]TTAATTTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGA</left_flank>
        <right_flank>TTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAA</canonical>
            <polymorphic>GTGTAGATGTATAACCATGTGCCAATATAAGTATAACTCTGCTAATTTTACTACTTATTGTAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGARTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAACATGAGCCTTAGGTAAC</pcr_primer_p1>
		<pcr_primer_p2>CTGAGATTCTTGTTTTTATTTGTATT</pcr_primer_p2>
		<pcr_amplicon_size>338</pcr_amplicon_size>
		<canonical_amplicon>CTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAG</canonical_amplicon>
		<polymorphic_amplicon>CTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGARTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34391</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>4117</contig_pos>
        <strand></strand>
        <context>GAAACATAGA[C/T]AACTCAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGA</left_flank>
        <right_flank>AACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAAT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAA</canonical>
            <polymorphic>TAATAAAAACCAGGGACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGAYAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAATTTGTGAACCATAACCT</pcr_primer_p1>
		<pcr_primer_p2>TTCATGAAGAGGAGTTTTTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAA</canonical_amplicon>
		<polymorphic_amplicon>CTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGAYAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34392</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>4132</contig_pos>
        <strand>+</strand>
        <context>CAAAAAATAT[A/G]TATAACATTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATAT</left_flank>
        <right_flank>TATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAAC</right_flank>
        <qual_score>149</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACA</canonical>
            <polymorphic>ACAGTAGTAAAAAACTTATATGAGTAACTGAAGAATAAGCTGCTAAAGCCTTAGAATCACTTTGAAACACACAACAAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATRTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAATTTGTGAACCATAACCTA</pcr_primer_p1>
		<pcr_primer_p2>TTCATGAAGAGGAGTTTTTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAA</canonical_amplicon>
		<polymorphic_amplicon>CTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATRTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34393</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>4207</contig_pos>
        <strand></strand>
        <context>aaattaataa[A/G]ttattatttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAA</left_flank>
        <right_flank>TTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTAT</right_flank>
        <qual_score>47</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACT</canonical>
            <polymorphic>AAAAAGATCCTAAAATCATACCTAAAAAGGCAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAARTTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>122 108 93 86 85 76 67 64 55 36 31 30 29 27 26 21 21 9 8 6</canonical_bands>
                <polymorphic_bands>122 108 93 93 86 76 67 64 55 36 31 30 29 27 26 21 21 9 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAATTTGTGAACCATAACCTA</pcr_primer_p1>
		<pcr_primer_p2>TTCATGAAGAGGAGTTTTTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAA</canonical_amplicon>
		<polymorphic_amplicon>CTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAARTTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34394</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>4237</contig_pos>
        <strand>+</strand>
        <context>TCAAAATAAT[A/C]CCAAGAATAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAAT</left_flank>
        <right_flank>CCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACC</canonical>
            <polymorphic>CAATTAAAATTCAAACATTATTATGTACAAAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATMCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAATTTGTGAACCATAACCTA</pcr_primer_p1>
		<pcr_primer_p2>TTCATGAAGAGGAGTTTTTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAA</canonical_amplicon>
		<polymorphic_amplicon>CTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATMCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34395</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>4266</contig_pos>
        <strand>+</strand>
        <context>ATGACAATCA[A/G]TAAAATAAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCA</left_flank>
        <right_flank>TAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTA</canonical>
            <polymorphic>AAACTTAAACTACCTAAAATACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCARTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTGTGAACCATAACCTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AATTTTTCATGAAGAGGAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATT</canonical_amplicon>
		<polymorphic_amplicon>AATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCARTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34396</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>4285</contig_pos>
        <strand>+</strand>
        <context>ACCTGTACGA[A/G]TCTAAAATTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGA</left_flank>
        <right_flank>TCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACA</canonical>
            <polymorphic>TACGTAAAAAACCAGCTGTACCCAATTTTAATAAAAGGCCTGCTAAAAGTATACTAGCTGTAGTGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGARTCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 400 98</canonical_bands>
                <polymorphic_bands>600 400</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATACAAATAAAAACAAGAATCTCAG</pcr_primer_p1>
		<pcr_primer_p2>GGGTTTTTAGTAGCTTTGTTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>AATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCC</canonical_amplicon>
		<polymorphic_amplicon>AATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGARTCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34397</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>4348</contig_pos>
        <strand></strand>
        <context>TAAATAAAAT[G/A]GCAAAAAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAAT</left_flank>
        <right_flank>GCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAA</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAAT</canonical>
            <polymorphic>TGGGGGCCTCAACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATRGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAAAATTAGAAAAACTCCTCTTCAT</pcr_primer_p1>
		<pcr_primer_p2>TGACATTTTGTTGATGTAGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCA</canonical_amplicon>
		<polymorphic_amplicon>CTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATRGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34398</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>4359</contig_pos>
        <strand></strand>
        <context>GCAAAAAGAA[A/G]AAARRATGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAA</left_flank>
        <right_flank>AAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTA</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTA</canonical>
            <polymorphic>ACATGAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAARAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTCCTCTTCATGAAAAATTA</pcr_primer_p1>
		<pcr_primer_p2>GCCATTTTATATTGACATTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGC</canonical_amplicon>
		<polymorphic_amplicon>AAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAARAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34399</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>4363</contig_pos>
        <strand>+</strand>
        <context>AAAGAARAAA[A/G]RATGTTGGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAA</left_flank>
        <right_flank>TATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAA</canonical>
            <polymorphic>GAGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAARTATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTCCTCTTCATGAAAAATTA</pcr_primer_p1>
		<pcr_primer_p2>GCCATTTTATATTGACATTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGC</canonical_amplicon>
		<polymorphic_amplicon>AAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAARTATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34400</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>4364</contig_pos>
        <strand>+</strand>
        <context>AAGAARAAAR[A/G]ATGTTGGCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAA</left_flank>
        <right_flank>ATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAA</canonical>
            <polymorphic>AGCCTTAGGTAACCATAGATGTAAAAAATAAATAGGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAARATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTCCTCTTCATGAAAAATTA</pcr_primer_p1>
		<pcr_primer_p2>GCCATTTTATATTGACATTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGC</canonical_amplicon>
		<polymorphic_amplicon>AAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAARATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34401</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>4398</contig_pos>
        <strand>+</strand>
        <context>AAAGAAACAA[A/T]CAAAAATTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAA</left_flank>
        <right_flank>CAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAA</canonical>
            <polymorphic>GGAAATTTTATTATAAACCTTAATCTTAAAATAAAAAATATTTCTCAGGAGATAACAAAATTATAGTAGGTAAACACCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAWCAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTCCTCTTCATGAAAAATTA</pcr_primer_p1>
		<pcr_primer_p2>GCCATTTTATATTGACATTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGC</canonical_amplicon>
		<polymorphic_amplicon>AAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAWCAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34402</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>4474</contig_pos>
        <strand>+</strand>
        <context>CATAGCTACA[C/T]TAGTAAGAYC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACA</left_flank>
        <right_flank>TAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAA</canonical>
            <polymorphic>CCAGTAAAAAATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACAYTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTCCTCTTCATGAAAAATTA</pcr_primer_p1>
		<pcr_primer_p2>GCCATTTTATATTGACATTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGC</canonical_amplicon>
		<polymorphic_amplicon>AAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACAYTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34403</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>4483</contig_pos>
        <strand>+</strand>
        <context>AYTAGTAAGA[C/T]CATCAATAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGA</left_flank>
        <right_flank>CATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAA</canonical>
            <polymorphic>AATTACTTTTAAAATACACAAATAAAAAAGGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGAYCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACTCCTCTTCATGAAAAATTA</pcr_primer_p1>
		<pcr_primer_p2>GCCATTTTATATTGACATTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGC</canonical_amplicon>
		<polymorphic_amplicon>AAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGAYCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34404</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>4512</contig_pos>
        <strand>+</strand>
        <context>AATAAAAATA[A/G]TCAAACTACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATA</left_flank>
        <right_flank>TCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAA</canonical>
            <polymorphic>GGAAATGAACAAAAAGCAGCATAAAACATTAAATAATAAGAAGAGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATARTCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAATTCTAACAAAGCTACTAAAA</pcr_primer_p1>
		<pcr_primer_p2>GTATTCATGTTCTATGTGGTGGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATAC</canonical_amplicon>
		<polymorphic_amplicon>CAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATARTCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34405</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>4555</contig_pos>
        <strand>+</strand>
        <context>TGGCAAACTC[C/T]AAACCTAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTC</left_flank>
        <right_flank>AAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAA</canonical>
            <polymorphic>AGTTAATTTTCTCAATTTGTGAACCATAACCTAAAATTATTACTAAAATAGGAAACATAGACAACTCAAAAAATATGTATAACATTATTATATTACTTGGAATAAAAAAAATAATACAAATAAAAACAAGAATCTCAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCYAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAATTCTAACAAAGCTACTAAAA</pcr_primer_p1>
		<pcr_primer_p2>GTATTCATGTTCTATGTGGTGGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATAC</canonical_amplicon>
		<polymorphic_amplicon>CAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCYAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34406</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>4690</contig_pos>
        <strand>+</strand>
        <context>CAAAAACTCC[A/G]TCCGCAATAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCC</left_flank>
        <right_flank>TCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAA</canonical>
            <polymorphic>CAGATAAAATTAATAAATTATTATTTTTCTCTCTAATCAAAATAATCCCAAGAATAAATAGTCTTATGACAATCAGTAAAATAAACCTGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCRTCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAACTACATCAACAAAATGTCA</pcr_primer_p1>
		<pcr_primer_p2>CTTGTCTGTTAGCAGCTTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAG</canonical_amplicon>
		<polymorphic_amplicon>CAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCRTCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34407</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>4777</contig_pos>
        <strand>+</strand>
        <context>AAATTATACT[A/G]TTGGTACATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACT</left_flank>
        <right_flank>TTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTA</canonical>
            <polymorphic>TGTACGAATCTAAAATTAGAAAAACTCCTCTTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTRTTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTAAAAATAAACCACCACATA</pcr_primer_p1>
		<pcr_primer_p2>TTCTTTTAAGAAGTGGTGTTACAG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>AGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAA</canonical_amplicon>
		<polymorphic_amplicon>AGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTRTTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34408</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>4807</contig_pos>
        <strand>+</strand>
        <context>TTAAAAGTCT[A/G]TGGTGRGCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCT</left_flank>
        <right_flank>TGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTT</canonical>
            <polymorphic>TTCATGAAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTRTGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATAAGCTGCTAACAGACAAG</pcr_primer_p1>
		<pcr_primer_p2>CAGAGAGTTTATGTTCTTCTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTG</canonical_amplicon>
		<polymorphic_amplicon>AAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTRTGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34409</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>4813</contig_pos>
        <strand>+</strand>
        <context>GTCTRTGGTG[A/G]GCTCAAGTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTG</left_flank>
        <right_flank>GCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAG</canonical>
            <polymorphic>AAAAATTATTAAAGATTATAAAACTAAATAAAATGGCAAAAAGAAAAAAATATGTTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGRGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>373 145 126 96 66 58 53 44 39</canonical_bands>
                <polymorphic_bands>373 192 145 96 58 53 44 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATAAGCTGCTAACAGACAAG</pcr_primer_p1>
		<pcr_primer_p2>CAGAGAGTTTATGTTCTTCTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTG</canonical_amplicon>
		<polymorphic_amplicon>AAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGRGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34410</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>4867</contig_pos>
        <strand>+</strand>
        <context>TTAATAAAGG[A/C]ACACCAAARG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGG</left_flank>
        <right_flank>ACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAAT</canonical>
            <polymorphic>TTGGCTTAAACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGMACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATAAGCTGCTAACAGACAAG</pcr_primer_p1>
		<pcr_primer_p2>CAGAGAGTTTATGTTCTTCTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTG</canonical_amplicon>
		<polymorphic_amplicon>AAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGMACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34411</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>4876</contig_pos>
        <strand>+</strand>
        <context>GMACACCAAA[A/G]GGRTTAACCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAA</left_flank>
        <right_flank>GGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAA</canonical>
            <polymorphic>ACAACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAARGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATAAGCTGCTAACAGACAAG</pcr_primer_p1>
		<pcr_primer_p2>CAGAGAGTTTATGTTCTTCTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTG</canonical_amplicon>
		<polymorphic_amplicon>AAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAARGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34412</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>4879</contig_pos>
        <strand>+</strand>
        <context>CACCAAARGG[A/G]TTAACCAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGG</left_flank>
        <right_flank>TTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAG</canonical>
            <polymorphic>ACCACAATAAAGAAACAAACAAAAATTCTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGRTTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATAAGCTGCTAACAGACAAG</pcr_primer_p1>
		<pcr_primer_p2>CAGAGAGTTTATGTTCTTCTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTG</canonical_amplicon>
		<polymorphic_amplicon>AAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGRTTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34413</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>4906</contig_pos>
        <strand>+</strand>
        <context>CAAAAGGAGA[C/T]CAAGTTTCAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGA</left_flank>
        <right_flank>CAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTC</canonical>
            <polymorphic>CTAACAAAGCTACTAAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGAYCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATAAGCTGCTAACAGACAAG</pcr_primer_p1>
		<pcr_primer_p2>CAGAGAGTTTATGTTCTTCTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTG</canonical_amplicon>
		<polymorphic_amplicon>AAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGAYCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34414</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>4920</contig_pos>
        <strand>+</strand>
        <context>GTTTCACCTA[A/G]CTCGTGAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTA</left_flank>
        <right_flank>CTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGAC</canonical>
            <polymorphic>AAAAACCCTATAATTACAAGTTATATATTCTTAATTAAACTATCATAGCTACATTAGTAAGATCATCAATAAACAAATACAAATAAAAATAATCAAACTACATCAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTARCTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATAAGCTGCTAACAGACAAG</pcr_primer_p1>
		<pcr_primer_p2>CAGAGAGTTTATGTTCTTCTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTG</canonical_amplicon>
		<polymorphic_amplicon>AAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTARCTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34415</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>5023</contig_pos>
        <strand>+</strand>
        <context>ATTTAAACCC[A/G]TCTATYACAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCC</left_flank>
        <right_flank>TCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATA</canonical>
            <polymorphic>CAACAAAATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCRTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCACTTCTTAAAAGAATAATGGTA</pcr_primer_p1>
		<pcr_primer_p2>GGGTAAAGACATTGCTATAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCC</canonical_amplicon>
		<polymorphic_amplicon>ACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCRTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34416</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>5029</contig_pos>
        <strand>+</strand>
        <context>ACCCRTCTAT[C/T]ACAAAAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTAT</left_flank>
        <right_flank>ACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGT</canonical>
            <polymorphic>AATGTCAATATAAAATGGCAAACTCCAAACCTAAATGATGATTATAATTAAAATGATTTTTTAGTAAACGTAAAAAATTAAAAGCTAAAAATAAACCACCACATAGAACATGAATACCATGAAAACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATYACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>385 182 114 98 82 45 36 22 19 11 3 3</canonical_bands>
                <polymorphic_bands>407 182 114 98 82 45 36 19 11 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAAATGTATACCAAAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>TTTGTTTTCAGTTTTGTTTATTTC</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>ACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAA</canonical_amplicon>
		<polymorphic_amplicon>ACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATYACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34417</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>5152</contig_pos>
        <strand></strand>
        <context>ATTTAAAAAA[T/C]ATAACCAAYG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAA</left_flank>
        <right_flank>ATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGC</right_flank>
        <qual_score>47</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGC</canonical>
            <polymorphic>AACCAGTAGATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAAYATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCTCTATAGCAATGTCTTTACC</pcr_primer_p1>
		<pcr_primer_p2>TTTCAGTAATTTATTTTGGTTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>319</pcr_amplicon_size>
		<canonical_amplicon>CCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAA</canonical_amplicon>
		<polymorphic_amplicon>CCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAAYATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34418</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>5161</contig_pos>
        <strand>+</strand>
        <context>AYATAACCAA[C/T]GATCTTAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAA</left_flank>
        <right_flank>GATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAA</canonical>
            <polymorphic>ATAAATAAAAAATTCTACCAAAAACTCCATCCGCAATAGAAAAACTAGCCTCTATATACTCTATTAACTGGATACCAGTAAAATAAGCTGCTAACAGACAAGTTAAAATTATACTATTGGTACATCTTTTATTTCTTAAAAGTCTATGGTGGGCTCAAGTAACTGTAACACCACTTCTTAAAAGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAYGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>500 262 238</canonical_bands>
                <polymorphic_bands>738 262</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCTCTATAGCAATGTCTTTACC</pcr_primer_p1>
		<pcr_primer_p2>TTTCAGTAATTTATTTTGGTTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>319</pcr_amplicon_size>
		<canonical_amplicon>CCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAA</canonical_amplicon>
		<polymorphic_amplicon>CCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAYGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34419</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>5343</contig_pos>
        <strand>+</strand>
        <context>ATACCTAATA[A/G]TAAGTAAGCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATA</left_flank>
        <right_flank>TAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTA</canonical>
            <polymorphic>AGAATAATGGTATTTAATAAAGGAACACCAAAGGGATTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATARTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTAACATCCCAGCAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTAGGTCAGTGTATAGTAGAAGATCC</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>TCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATARTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34420</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>5379</contig_pos>
        <strand>+</strand>
        <context>ACTGAAAATA[A/G]RGGYCTTAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATA</left_flank>
        <right_flank>GGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAAT</canonical>
            <polymorphic>TTAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATARGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTAACATCCCAGCAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTATTTTAAGATGATTAGGTCAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>275</pcr_amplicon_size>
		<canonical_amplicon>TCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATARGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34421</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>5380</contig_pos>
        <strand>+</strand>
        <context>CTGAAAATAR[A/G]GGYCTTAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAG</left_flank>
        <right_flank>GGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCT</right_flank>
        <qual_score>146</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATG</canonical>
            <polymorphic>TAACCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGRGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTAACATCCCAGCAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TTATTTTAAGATGATTAGGTCAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>275</pcr_amplicon_size>
		<canonical_amplicon>TCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGRGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34422</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>5383</contig_pos>
        <strand>+</strand>
        <context>AAAATARRGG[C/T]CTTAAAAMAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGG</left_flank>
        <right_flank>CTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAA</canonical>
            <polymorphic>CCAAATGTATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGYCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>499 378 123</canonical_bands>
                <polymorphic_bands>877 123</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>411 269 109 101 57 31 22</canonical_bands>
                <polymorphic_bands>411 300 109 101 57 22</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTAACATCCCAGCAGAAG</pcr_primer_p1>
		<pcr_primer_p2>CAGTTATTTTAAGATGATTAGGTCAG</pcr_primer_p2>
		<pcr_amplicon_size>278</pcr_amplicon_size>
		<canonical_amplicon>TCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTG</canonical_amplicon>
		<polymorphic_amplicon>TCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGYCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34423</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>5391</contig_pos>
        <strand>+</strand>
        <context>GGYCTTAAAA[A/C]AGTAAAAGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAA</left_flank>
        <right_flank>AGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTG</right_flank>
        <qual_score>146</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAA</canonical>
            <polymorphic>ATACCAAAAGGAGACCAAGTTTCACCTAACTCGTGAACTGGAACTAAAGCTGCATCAAAAAAAGTTCAAAAAATACAAAAGAAGAACATAAACTCTCTGAAAACAAATAAAATAACACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAAMAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 395 104</canonical_bands>
                <polymorphic_bands>896 104</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTAACATCCCAGCAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TGTAACATTTTATTTCTTTGCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>370</pcr_amplicon_size>
		<canonical_amplicon>TCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACA</canonical_amplicon>
		<polymorphic_amplicon>TCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAAMAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34424</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>5507</contig_pos>
        <strand></strand>
        <context>ATAATTATTA[A/T]CTAAAGCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTA</left_flank>
        <right_flank>CTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAA</canonical>
            <polymorphic>ACCAAATTTAAACCCGTCTATCACAAAAAAATTATGATAACCTCTTAAACCCTCTATAGCAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAWCTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>140 132 92 79 75 66 61 54 45 37 37 34 29 28 22 22 20 19 8</canonical_bands>
                <polymorphic_bands>140 132 92 79 75 66 61 57 54 45 37 34 29 28 22 22 19 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCTAAACCAAAATAAATTACTGA</pcr_primer_p1>
		<pcr_primer_p2>TATGCTATTTTACGTGCAATTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATA</canonical_amplicon>
		<polymorphic_amplicon>AAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAWCTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34425</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>5566</contig_pos>
        <strand>+</strand>
        <context>CACCTAAAAC[C/T]TTATTTGGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAAC</left_flank>
        <right_flank>TTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTA</canonical>
            <polymorphic>CAATGTCTTTACCCCAAGCAAAAGAAATAAACAAAACTGAAAACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACYTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCTAATCATCTTAAAATAACTGAA</pcr_primer_p1>
		<pcr_primer_p2>CTGAGATATTTATTGAGGCTGAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAG</canonical_amplicon>
		<polymorphic_amplicon>GACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACYTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34426</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>5608</contig_pos>
        <strand>+</strand>
        <context>CAAATAAAAA[A/G]TATCACTCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAA</left_flank>
        <right_flank>TATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCT</canonical>
            <polymorphic>ACAAAGTAAAAATAAATAATTCGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAARTATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCTAATCATCTTAAAATAACTGAA</pcr_primer_p1>
		<pcr_primer_p2>CTGAGATATTTATTGAGGCTGAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAG</canonical_amplicon>
		<polymorphic_amplicon>GACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAARTATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34427</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>5629</contig_pos>
        <strand>+</strand>
        <context>GGACAATATG[C/T]ACAGGTCTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATG</left_flank>
        <right_flank>ACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAA</right_flank>
        <qual_score>149</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAA</canonical>
            <polymorphic>CGTATAAACCAAATTTAAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGYACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGTACA</site>
                <isoschizomers>
                    <enzyme>AauI</enzyme>
                    <enzyme>Bsp1407I</enzyme>
                    <enzyme>BsrGI</enzyme>
                    <enzyme>SspBI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGCACGTAAAATAGCATAAG</pcr_primer_p1>
		<pcr_primer_p2>TTAATTTTTCTTCACAGAACTGG</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>AATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAA</canonical_amplicon>
		<polymorphic_amplicon>AATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGYACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34428</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>5645</contig_pos>
        <strand>+</strand>
        <context>TCTCATTATT[A/G]GGTCAGCCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATT</left_flank>
        <right_flank>GGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATT</right_flank>
        <qual_score>145</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGA</canonical>
            <polymorphic>AAAAAATATAACCAAAGATCTTAACATCCCAGCAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTRGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTAAAATAGCATAAGCAAATAAA</pcr_primer_p1>
		<pcr_primer_p2>TTAATTTTTCTTCACAGAACTGG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAA</canonical_amplicon>
		<polymorphic_amplicon>CGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTRGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34429</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>5677</contig_pos>
        <strand>+</strand>
        <context>CAGCATCACC[C/T]AAATTAAATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACC</left_flank>
        <right_flank>AAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTAC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATG</canonical>
            <polymorphic>CAGAAGCAAAAAATAAATTAAAAGCATAACTAGAAAGTCTTAAAATATGAAAATTATGAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCYAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTAAAATAGCATAAGCAAATAAA</pcr_primer_p1>
		<pcr_primer_p2>TTAATTTTTCTTCACAGAACTGG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAA</canonical_amplicon>
		<polymorphic_amplicon>CGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCYAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34430</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>5734</contig_pos>
        <strand>+</strand>
        <context>CTACAATATT[A/G]TARGCATCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATT</left_flank>
        <right_flank>TAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGA</canonical>
            <polymorphic>GAAATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTRTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTAAAATAGCATAAGCAAATAAA</pcr_primer_p1>
		<pcr_primer_p2>TTAATTTTTCTTCACAGAACTGG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAA</canonical_amplicon>
		<polymorphic_amplicon>CGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTRTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34431</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>5737</contig_pos>
        <strand>+</strand>
        <context>CAATATTRTA[A/G]GCATCTTTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTA</left_flank>
        <right_flank>GCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAA</canonical>
            <polymorphic>ATATAACATATTATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTARGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTAAAATAGCATAAGCAAATAAA</pcr_primer_p1>
		<pcr_primer_p2>TTAATTTTTCTTCACAGAACTGG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAA</canonical_amplicon>
		<polymorphic_amplicon>CGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTARGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34432</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>5749</contig_pos>
        <strand>+</strand>
        <context>CATCTTTACC[A/G]ATATACTCRG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACC</left_flank>
        <right_flank>ATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCT</canonical>
            <polymorphic>ATAATTTTTAGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCRATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTAAAATAGCATAAGCAAATAAA</pcr_primer_p1>
		<pcr_primer_p2>TTAATTTTTCTTCACAGAACTGG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAA</canonical_amplicon>
		<polymorphic_amplicon>CGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCRATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34433</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>5758</contig_pos>
        <strand>+</strand>
        <context>CRATATACTC[A/G]GGCCTGAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTC</left_flank>
        <right_flank>GGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGT</right_flank>
        <qual_score>146</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGT</canonical>
            <polymorphic>AGAACCTAAATCTAATGTATTAACTTATACTAAACATGTAATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCRGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGGCCT</site>
                <isoschizomers>
                    <enzyme>AatI</enzyme>
                    <enzyme>Eco147I</enzyme>
                    <enzyme>PceI</enzyme>
                    <enzyme>SseBI</enzyme>
                    <enzyme>StuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 221 186 90</canonical_bands>
                <polymorphic_bands>593 221 186</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTAAAATAGCATAAGCAAATAAA</pcr_primer_p1>
		<pcr_primer_p2>TTAATTTTTCTTCACAGAACTGG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAA</canonical_amplicon>
		<polymorphic_amplicon>CGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCRGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34434</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>5797</contig_pos>
        <strand>+</strand>
        <context>CGTGGCAATA[C/T]AGACTAGAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATA</left_flank>
        <right_flank>AGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAA</canonical>
            <polymorphic>AATATTATTTAAATAGTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATAYAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACAATAAAAACTAACCAGACTACA</pcr_primer_p1>
		<pcr_primer_p2>CCAACTATTGTAACTTGAATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGG</canonical_amplicon>
		<polymorphic_amplicon>AAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATAYAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34435</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>5812</contig_pos>
        <strand>+</strand>
        <context>TAGAAGTTCT[A/C]CCAGTTCTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCT</left_flank>
        <right_flank>CCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACC</canonical>
            <polymorphic>GTAATTTTCTAGTTATAAAAATACCTAATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTMCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACAATAAAAACTAACCAGACTACA</pcr_primer_p1>
		<pcr_primer_p2>CCAACTATTGTAACTTGAATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGG</canonical_amplicon>
		<polymorphic_amplicon>AAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTMCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34436</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>5839</contig_pos>
        <strand>+</strand>
        <context>AAATTAAATG[A/T]CCTAGAACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATG</left_flank>
        <right_flank>CCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAA</canonical>
            <polymorphic>ATAGTAAGTAAGCTAAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGWCCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACAATAAAAACTAACCAGACTACA</pcr_primer_p1>
		<pcr_primer_p2>CCAACTATTGTAACTTGAATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGG</canonical_amplicon>
		<polymorphic_amplicon>AAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGWCCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34437</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>5853</contig_pos>
        <strand>+</strand>
        <context>AGAACAATAA[A/C]TAAAATAGCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAA</left_flank>
        <right_flank>TAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTC</canonical>
            <polymorphic>AAACCAAAATAAATTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAMTAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACAATAAAAACTAACCAGACTACA</pcr_primer_p1>
		<pcr_primer_p2>CCAACTATTGTAACTTGAATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGG</canonical_amplicon>
		<polymorphic_amplicon>AAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAMTAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34438</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>5866</contig_pos>
        <strand>+</strand>
        <context>AAATAGCCCA[A/G]GGTARTAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCA</left_flank>
        <right_flank>GGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGAC</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGT</canonical>
            <polymorphic>TTACTGAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCARGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>504 420 76</canonical_bands>
                <polymorphic_bands>503 420 77</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACAATAAAAACTAACCAGACTACA</pcr_primer_p1>
		<pcr_primer_p2>CCAACTATTGTAACTTGAATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGG</canonical_amplicon>
		<polymorphic_amplicon>AAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCARGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34439</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>5871</contig_pos>
        <strand>+</strand>
        <context>GCCCARGGTA[A/G]TAAAAAATGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTA</left_flank>
        <right_flank>TAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTA</canonical>
            <polymorphic>GAAAATAGGGGCCTTAAAACAGTAAAAGGATCTTCTACTATACACTGACCTAATCATCTTAAAATAACTGAAGAAATAATAAATAAAAATACTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTARTAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACAATAAAAACTAACCAGACTACA</pcr_primer_p1>
		<pcr_primer_p2>CCAACTATTGTAACTTGAATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGG</canonical_amplicon>
		<polymorphic_amplicon>AAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTARTAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34440</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>5962</contig_pos>
        <strand></strand>
        <context>GTCCTCAAAT[A/C]GGAATAACAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAAT</left_flank>
        <right_flank>GGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAAC</canonical>
            <polymorphic>CTAAAAACTTATTCAACTTAGTTAAACAAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATMGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCTNNNNNAGG</site>
                <isoschizomers>
                    <enzyme>BstENI</enzyme>
                    <enzyme>EcoNI</enzyme>
                    <enzyme>XagI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTTTAATGTAGCTCCTGTGA</pcr_primer_p1>
		<pcr_primer_p2>CATATTTTCAAAGGTTTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATG</canonical_amplicon>
		<polymorphic_amplicon>GAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATMGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34441</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>5989</contig_pos>
        <strand></strand>
        <context>GACTAGTAAT[C/T]ACTACTGCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAAT</left_flank>
        <right_flank>ACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTAT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACC</canonical>
            <polymorphic>AAGAAGTATAATTATTAACTAAAGCAAAGAAATAAAATGTTACAATTCTTATTAATAAAGCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATYACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>242 230 111 91 68 61 45 33 32 27 24 19 9 5 3</canonical_bands>
                <polymorphic_bands>242 230 111 91 68 61 46 45 33 32 24 9 5 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTTTAATGTAGCTCCTGTGA</pcr_primer_p1>
		<pcr_primer_p2>CATATTTTCAAAGGTTTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATG</canonical_amplicon>
		<polymorphic_amplicon>GAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATYACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34442</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6048</contig_pos>
        <strand>+</strand>
        <context>ATAAAAGCCT[C/T]TATTATTAST</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCT</left_flank>
        <right_flank>TATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCT</canonical>
            <polymorphic>GCAATTACACCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTYTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTTTAATGTAGCTCCTGTGA</pcr_primer_p1>
		<pcr_primer_p2>CATATTTTCAAAGGTTTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATG</canonical_amplicon>
		<polymorphic_amplicon>GAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTYTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34443</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6057</contig_pos>
        <strand>+</strand>
        <context>TYTATTATTA[C/G]TAATAAGTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTA</left_flank>
        <right_flank>TAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAAT</canonical>
            <polymorphic>CCTAAAACCTTATTTGGAATTGCACGTAAAATAGCATAAGCAAATAAAAAATATCACTCTGGGACAATATGTACAGGTCTCATTATTGGGTCAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTASTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTTTAATGTAGCTCCTGTGA</pcr_primer_p1>
		<pcr_primer_p2>CATATTTTCAAAGGTTTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATG</canonical_amplicon>
		<polymorphic_amplicon>GAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTASTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34444</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6148</contig_pos>
        <strand></strand>
        <context>AATATAGAAA[A/G]ATAAAAAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAA</left_flank>
        <right_flank>ATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACC</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAAT</canonical>
            <polymorphic>CAGCCTCAATAAATATCTCAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAARATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATCTGTGCTCAAACTAAAACA</pcr_primer_p1>
		<pcr_primer_p2>CCCTGATAGGTTAATAGCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGG</canonical_amplicon>
		<polymorphic_amplicon>TTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAARATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34445</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6166</contig_pos>
        <strand></strand>
        <context>ATAATCTGGC[T/C]CCRTTAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGC</left_flank>
        <right_flank>CCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATA</canonical>
            <polymorphic>CAGCATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCYCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>502 120 101 94 93 45 45</canonical_bands>
                <polymorphic_bands>622 101 94 93 45 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATCTGTGCTCAAACTAAAACA</pcr_primer_p1>
		<pcr_primer_p2>CCCTGATAGGTTAATAGCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGG</canonical_amplicon>
		<polymorphic_amplicon>TTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCYCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34446</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6169</contig_pos>
        <strand></strand>
        <context>ATCTGGCYCC[A/G]TTAAAATGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCC</left_flank>
        <right_flank>TTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAAT</right_flank>
        <qual_score>46</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAA</canonical>
            <polymorphic>CATCACCCAAATTAAATGGATAAATTAGTCTTAAAACAATAAAAACTAACCAGACTACAATATTGTAGGCATCTTTACCGATATACTCAGGCCTGAAACAAACTTTATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCRTTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATCTGTGCTCAAACTAAAACA</pcr_primer_p1>
		<pcr_primer_p2>CCCTGATAGGTTAATAGCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGG</canonical_amplicon>
		<polymorphic_amplicon>TTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCRTTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34447</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6274</contig_pos>
        <strand></strand>
        <context>AAAACGCCAA[G/A]AATGTACCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAA</left_flank>
        <right_flank>AATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACC</canonical>
            <polymorphic>TATCATAATCACCGTGGCAATACAGACTAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAARAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACATTCAAACCTTTTTCAAAC</pcr_primer_p1>
		<pcr_primer_p2>AAATTTTGGTAGAATATTGGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTT</canonical_amplicon>
		<polymorphic_amplicon>GACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAARAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34448</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6301</contig_pos>
        <strand></strand>
        <context>TTTGAAATAC[C/T]AAAACTATAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATAC</left_flank>
        <right_flank>AAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTT</right_flank>
        <qual_score>50</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTA</canonical>
            <polymorphic>TAGAAGTTCTCCCAGTTCTGTGAAGAAAAATTAAATGACCTAGAACAATAAATAAAATAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACYAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAACTGTAGAAAATGCTATTAACC</pcr_primer_p1>
		<pcr_primer_p2>AAATATGACTCTGAAGAAGTTAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>TGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTT</canonical_amplicon>
		<polymorphic_amplicon>TGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACYAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34449</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6358</contig_pos>
        <strand>+</strand>
        <context>TTTTTCTAGA[C/T]GGTAAAGTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGA</left_flank>
        <right_flank>GGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGAT</right_flank>
        <qual_score>151</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTT</canonical>
            <polymorphic>TAGCCCAGGGTAATAAAAAATGCAATACAAAAAAGAATTTTAATGTAGCTCCTGTGACACCAAAACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGAYGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAACTGTAGAAAATGCTATTAACC</pcr_primer_p1>
		<pcr_primer_p2>AAATATGACTCTGAAGAAGTTAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>TGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTT</canonical_amplicon>
		<polymorphic_amplicon>TGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGAYGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34450</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6421</contig_pos>
        <strand>+</strand>
        <context>TCAATACTCC[C/T]AATATTCTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCC</left_flank>
        <right_flank>AATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTT</canonical>
            <polymorphic>AACCACTTCAAATTCAAGTTACAATAGTTGGTCCTCAAATAGGAATAACACTTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCYAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTACCAAAATTTCAACTTAATG</pcr_primer_p1>
		<pcr_primer_p2>TTGTCATCTTTATGTGACTTAGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>444</pcr_amplicon_size>
		<canonical_amplicon>TTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</canonical_amplicon>
		<polymorphic_amplicon>TTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCYAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34451</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6472</contig_pos>
        <strand>+</strand>
        <context>CTAAAAGAGT[A/T]AAAAAAAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGT</left_flank>
        <right_flank>AAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACC</canonical>
            <polymorphic>TTAACAGACTAGTAATCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTWAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTACCAAAATTTCAACTTAATG</pcr_primer_p1>
		<pcr_primer_p2>TTGTCATCTTTATGTGACTTAGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>444</pcr_amplicon_size>
		<canonical_amplicon>TTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</canonical_amplicon>
		<polymorphic_amplicon>TTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTWAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34452</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6487</contig_pos>
        <strand></strand>
        <context>AAAATCTCAA[A/T]CCTAGACCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAA</left_flank>
        <right_flank>CCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCA</canonical>
            <polymorphic>TCACTACTGCAGCTCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAWCCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTAACTTCTTCAGAGTCATATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTCATCTTTATGTGACTTAGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>335</pcr_amplicon_size>
		<canonical_amplicon>TCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAWCCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34453</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6500</contig_pos>
        <strand></strand>
        <context>TAGACCCAAA[G/A]TAACTATTRA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAA</left_flank>
        <right_flank>TAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAA</canonical>
            <polymorphic>TCAAAAACTTATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAARTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>283 226 142 135 81 48 31 22 15 11 6</canonical_bands>
                <polymorphic_bands>283 226 157 142 81 48 31 15 11 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTAACTTCTTCAGAGTCATATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTCATCTTTATGTGACTTAGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>335</pcr_amplicon_size>
		<canonical_amplicon>TCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAARTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34454</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6509</contig_pos>
        <strand></strand>
        <context>ARTAACTATT[A/G]AAAAMCCTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATT</left_flank>
        <right_flank>AAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCT</right_flank>
        <qual_score>46</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAA</canonical>
            <polymorphic>TATCTGTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTRAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>202 136 98 93 66 63 56 42 40 39 38 33 22 20 19 10 9 8 6</canonical_bands>
                <polymorphic_bands>202 192 98 93 66 63 42 40 39 38 33 22 20 19 10 9 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTAACTTCTTCAGAGTCATATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTCATCTTTATGTGACTTAGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>335</pcr_amplicon_size>
		<canonical_amplicon>TCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTRAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34455</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6514</contig_pos>
        <strand></strand>
        <context>CTATTRAAAA[A/C]CCTATTTGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAA</left_flank>
        <right_flank>CCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCA</canonical>
            <polymorphic>GTGCTCAAACTAAAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAMCCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTAACTTCTTCAGAGTCATATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTCATCTTTATGTGACTTAGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>335</pcr_amplicon_size>
		<canonical_amplicon>TCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAMCCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34456</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6526</contig_pos>
        <strand></strand>
        <context>CTATTTGTGA[C/T]AGTGWCCTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGA</left_flank>
        <right_flank>AGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAA</canonical>
            <polymorphic>AAACATAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGAYAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>298 252 247 203</canonical_bands>
                <polymorphic_bands>545 252 203</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>257 252 142 135 81 48 31 22 15 11 6</canonical_bands>
                <polymorphic_bands>257 252 142 135 81 48 31 28 15 11</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>495 283 216 6</canonical_bands>
                <polymorphic_bands>501 283 216</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTAACTTCTTCAGAGTCATATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTCATCTTTATGTGACTTAGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>335</pcr_amplicon_size>
		<canonical_amplicon>TCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGAYAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34457</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6531</contig_pos>
        <strand></strand>
        <context>TGTGAYAGTG[A/T]CCTCAAGGYT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTG</left_flank>
        <right_flank>CCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAAT</canonical>
            <polymorphic>TAACCTATAAAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGWCCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>257 252 142 135 81 48 31 22 15 11 6</canonical_bands>
                <polymorphic_bands>257 252 142 135 81 48 31 22 17 15</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>490 288 216 6</canonical_bands>
                <polymorphic_bands>490 288 222</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTAACTTCTTCAGAGTCATATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTCATCTTTATGTGACTTAGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>335</pcr_amplicon_size>
		<canonical_amplicon>TCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGWCCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34458</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6540</contig_pos>
        <strand></strand>
        <context>GWCCTCAAGG[T/C]TACCACCTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGG</left_flank>
        <right_flank>TACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAAC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAAT</canonical>
            <polymorphic>AAAGCCTCTATTATTACTAATAAGTAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGYTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGTNACC</site>
                <isoschizomers>
                    <enzyme>BstEII</enzyme>
                    <enzyme>BstPI</enzyme>
                    <enzyme>Eco91I</enzyme>
                    <enzyme>EcoO65I</enzyme>
                    <enzyme>PspEI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>266 243 142 135 81 48 31 22 15 11 6</canonical_bands>
                <polymorphic_bands>266 243 153 135 81 48 31 22 15 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTAACTTCTTCAGAGTCATATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTCATCTTTATGTGACTTAGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>335</pcr_amplicon_size>
		<canonical_amplicon>TCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGYTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34459</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6564</contig_pos>
        <strand></strand>
        <context>AAATCTTCTT[T/C]TACCAGTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTT</left_flank>
        <right_flank>TACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAG</right_flank>
        <qual_score>50</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAA</canonical>
            <polymorphic>TAAATAGTTAACCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTYTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTAACTTCTTCAGAGTCATATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTCATCTTTATGTGACTTAGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>335</pcr_amplicon_size>
		<canonical_amplicon>TCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTYTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34460</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6575</contig_pos>
        <strand></strand>
        <context>TACCAGTTTT[A/G]CTAGTCTAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTT</left_flank>
        <right_flank>CTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGA</right_flank>
        <qual_score>52</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAA</canonical>
            <polymorphic>CCCAGACATTCAAACCTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTRCTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACTAGT</site>
                <isoschizomers>
                    <enzyme>AhlI</enzyme>
                    <enzyme>BcuI</enzyme>
                    <enzyme>SpeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTAACTTCTTCAGAGTCATATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTCATCTTTATGTGACTTAGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>335</pcr_amplicon_size>
		<canonical_amplicon>TCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTRCTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34461</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6590</contig_pos>
        <strand></strand>
        <context>TCTAGAAAAA[C/A]CATAGTAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAA</left_flank>
        <right_flank>CATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAA</right_flank>
        <qual_score>47</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAA</canonical>
            <polymorphic>CTTTTTCAAACGATATCTTATAAAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAAMCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTAACTTCTTCAGAGTCATATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTCATCTTTATGTGACTTAGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>335</pcr_amplicon_size>
		<canonical_amplicon>TCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAAMCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34462</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6612</contig_pos>
        <strand></strand>
        <context>GACCAATAAT[T/C]AGTACAAAYC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAAT</left_flank>
        <right_flank>AGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAA</canonical>
            <polymorphic>AAAAACAAACCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATYAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>222 185 88 77 77 60 49 48 43 38 20 18 17 13 12 11 9 8 5</canonical_bands>
                <polymorphic_bands>242 185 88 77 77 60 49 48 43 38 18 17 13 12 11 9 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTAACTTCTTCAGAGTCATATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTCATCTTTATGTGACTTAGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>335</pcr_amplicon_size>
		<canonical_amplicon>TCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATYAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34463</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6621</contig_pos>
        <strand></strand>
        <context>TYAGTACAAA[C/T]CTRataaaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAA</left_flank>
        <right_flank>CTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATT</right_flank>
        <qual_score>50</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCC</canonical>
            <polymorphic>CCTTTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAAYCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTAACTTCTTCAGAGTCATATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTCATCTTTATGTGACTTAGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>335</pcr_amplicon_size>
		<canonical_amplicon>TCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAAYCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34464</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6624</contig_pos>
        <strand></strand>
        <context>GTACAAAYCT[G/A]ataaaatttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCT</left_flank>
        <right_flank>ATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAA</canonical>
            <polymorphic>TTGAAAATATGTAAATATAGAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTRATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTAACTTCTTCAGAGTCATATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTCATCTTTATGTGACTTAGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>335</pcr_amplicon_size>
		<canonical_amplicon>TCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTRATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34465</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6643</contig_pos>
        <strand></strand>
        <context>ttttgtaaaa[T/C]taaattatta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAA</left_flank>
        <right_flank>TAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAA</right_flank>
        <qual_score>50</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTG</canonical>
            <polymorphic>GAAAAATAAAAAATAATCTGGCTCCATTAAAATGAAAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAAYTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>202 136 93 74 66 58 56 40 39 38 33 27 26 22 20 19 18 10 9 8 6</canonical_bands>
                <polymorphic_bands>202 144 93 74 66 58 56 40 39 38 33 27 26 22 20 19 18 10 9 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>222 185 88 77 60 59 48 46 43 38 20 18 17 13 12 12 11 9 9 8 5</canonical_bands>
                <polymorphic_bands>222 185 88 77 60 59 48 46 43 38 20 18 17 17 13 12 11 9 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTAACTTCTTCAGAGTCATATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTCATCTTTATGTGACTTAGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>335</pcr_amplicon_size>
		<canonical_amplicon>TCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAAYTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34466</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6678</contig_pos>
        <strand></strand>
        <context>aattaaaCCA[G/T]CTGTAACCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCA</left_flank>
        <right_flank>CTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATT</canonical>
            <polymorphic>AAAATACGAAAAATTCAACCAAAATTAACTTCATACATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAKCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>500 259 241</canonical_bands>
                <polymorphic_bands>759 241</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>500 259 194 47</canonical_bands>
                <polymorphic_bands>759 194 47</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTAACTTCTTCAGAGTCATATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTCATCTTTATGTGACTTAGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>335</pcr_amplicon_size>
		<canonical_amplicon>TCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAKCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34467</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6713</contig_pos>
        <strand></strand>
        <context>AACTCTTTTG[T/C]ACCAAAAACA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTG</left_flank>
        <right_flank>ACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATT</canonical>
            <polymorphic>CATAATATATTGAACTGTAGAAAATGCTATTAACCTATCAGGGGTGTAATAAAACGCCAAGAATGTACCTGTAACAATTTGAAATACCAAAACTATACCCAATATTCTACCAAAATTTCAACTTAATGTTAAAGTTTTTCTAGATGGTAAAGTAACTAATATTCCATTAACAAAATTTAATAATCTATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGYACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 336 98 66</canonical_bands>
                <polymorphic_bands>598 336 66</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTAACTTCTTCAGAGTCATATTTT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGATTTGTCATCTTTATGTGA</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>TCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTT</canonical_amplicon>
		<polymorphic_amplicon>TCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGYACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34468</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6899</contig_pos>
        <strand>+</strand>
        <context>CTATTAAAGG[A/G]aaaataataa</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGG</left_flank>
        <right_flank>AAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATT</right_flank>
        <qual_score>146</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTG</canonical>
            <polymorphic>ATTATTGATTTTCAATACTCCTAATATTCTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGRAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGGAACTTTACCTTATCAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGGGAGACTGCTTTAGTATTT</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAAT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGRAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34469</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6927</contig_pos>
        <strand></strand>
        <context>tattttatta[C/T]TTCCAGARAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTA</left_flank>
        <right_flank>TTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAAC</right_flank>
        <qual_score>49</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAG</canonical>
            <polymorphic>CTTAACTTCTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTAYTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGGAACTTTACCTTATCAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGGGAGACTGCTTTAGTATTT</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAAT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTAYTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34470</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6935</contig_pos>
        <strand></strand>
        <context>taYTTCCAGA[A/G]AGCTCTTCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGA</left_flank>
        <right_flank>AGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGC</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAAT</canonical>
            <polymorphic>CTTCAGAGTCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGARAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGGAACTTTACCTTATCAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGGGAGACTGCTTTAGTATTT</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAAT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGARAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34471</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6965</contig_pos>
        <strand></strand>
        <context>TTCTTAAATT[G/A]ATTAACCAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATT</left_flank>
        <right_flank>ATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATG</canonical>
            <polymorphic>AAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTRATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGGAACTTTACCTTATCAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGGGAGACTGCTTTAGTATTT</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAAT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTRATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34472</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6977</contig_pos>
        <strand></strand>
        <context>TTAACCAAAA[C/T]CTAAAAGCYA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAA</left_flank>
        <right_flank>CTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCAC</canonical>
            <polymorphic>AAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAAYCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGGAACTTTACCTTATCAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGGGAGACTGCTTTAGTATTT</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAAT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAAYCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34473</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6986</contig_pos>
        <strand></strand>
        <context>AYCTAAAAGC[C/T]AATACRGATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGC</left_flank>
        <right_flank>AATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTT</canonical>
            <polymorphic>ACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCYAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>502 259 192 47</canonical_bands>
                <polymorphic_bands>549 259 192</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGGAACTTTACCTTATCAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGGGAGACTGCTTTAGTATTT</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAAT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCYAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34474</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6992</contig_pos>
        <strand></strand>
        <context>AAGCYAATAC[G/A]GATAARAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATAC</left_flank>
        <right_flank>GATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAA</canonical>
            <polymorphic>ACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACRGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGGAACTTTACCTTATCAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGGGAGACTGCTTTAGTATTT</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAAT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACRGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34475</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>6998</contig_pos>
        <strand></strand>
        <context>ATACRGATAA[G/A]AACATACTRA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAA</left_flank>
        <right_flank>AACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAAT</right_flank>
        <qual_score>50</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAAT</canonical>
            <polymorphic>AGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAARAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGGAACTTTACCTTATCAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGGGAGACTGCTTTAGTATTT</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAAT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAARAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34476</snp_id>
        <super_contig>c009001201.Contig1</super_contig>
        <contig_pos>7007</contig_pos>
        <strand></strand>
        <context>ARAACATACT[A/G]AAAAGCAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACT</left_flank>
        <right_flank>AAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTG</canonical>
            <polymorphic>TAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTRAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGGAACTTTACCTTATCAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGGGAGACTGCTTTAGTATTT</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAAT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTRAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34477</snp_id>
        <super_contig>c009100700.Contig1</super_contig>
        <contig_pos>3464</contig_pos>
        <strand></strand>
        <context>CCAGCAATCA[T/C]ATCATCAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCAGTATTTTATTGGCTTTACATATTAGTAAAGAAGAAGCCAGCAATCA</left_flank>
        <right_flank>ATCATCAGAAATTCTATTCGGATGGCCGTCTGGAACAAGTTATATGTTTA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGCGGACCATGATAGCACTTTTTATAAACCGAGACATGTCCACTGTTTCTAGCAATATGAATGGATCCAGAGCAAGTTGATTTTAGATCAATATTGAACGTGCACCTCAAGCAACAGTTTTAAAAAGAAGAAGAAGAAGCATATGTAACCTAGCATTGATTTTACCAGATTTCGTTTCTTCAGATGGACGATATAATTGGTTGTTGAACACAATCAACGGTGAACCCTTTTGGGATGTGAGACTAAAAATCAGAACTTTTTTAGAAAACTCGATTTTGCAGAATTTCTCTGAATTTTTAACCAATGCGTACCAAAAAAAAGAGCAATTTTCATCCAAAATTTCTGGTTCGACTGTCAGCTTTCGACGAGAACATCCTACTTTCTTTTTATACTTTTCCACAATTCTCTGAACCTCAGATCGTCTGAAAAAACAGGTATTTTTCACAGGTTCAGTATTTTATTGGCTTTACATATTAGTAAAGAAGAAGCCAGCAATCATATCATCAGAAATTCTATTCGGATGGCCGTCTGGAACAAGTTATATGTTTACAAATTCTCCATTAAGGATATTACATAAAAAAATTTTTTCGTCAGTTTCCTGAGACACATGATCCATCGCAAAATTATCTGAATCGTCATCGTCGTCGTCGTCTTCTGAATAATCCGGCAATTGAACGCTAGTATTGATGTTGCCGCTGACACCTGGTTAACTGAACTTTTAGAACAAAAGATTCCGGAAAATTTGAATACCGGAAGTTGTTGGCTCTGGCTCCGGTCTAGATAAAGTATTTTCAAAGTTTATCAAATTCTCATGGGATCTCATTTTATTAGAATCGAAATCATAAATTGGAGAAGATTGATTGGAGTGAGCAGATCAATAAACATAATTTGACCAGTGTTAGCACTGGTGTGAACAGTGTCTCCGTTGACTGCTTTCAAAGCTCGACGCCTTTCGTCAAATGTTGGAATTAAATATGTTTCACACAATAGACGTACTAT</canonical>
            <polymorphic>TCGCGGACCATGATAGCACTTTTTATAAACCGAGACATGTCCACTGTTTCTAGCAATATGAATGGATCCAGAGCAAGTTGATTTTAGATCAATATTGAACGTGCACCTCAAGCAACAGTTTTAAAAAGAAGAAGAAGAAGCATATGTAACCTAGCATTGATTTTACCAGATTTCGTTTCTTCAGATGGACGATATAATTGGTTGTTGAACACAATCAACGGTGAACCCTTTTGGGATGTGAGACTAAAAATCAGAACTTTTTTAGAAAACTCGATTTTGCAGAATTTCTCTGAATTTTTAACCAATGCGTACCAAAAAAAAGAGCAATTTTCATCCAAAATTTCTGGTTCGACTGTCAGCTTTCGACGAGAACATCCTACTTTCTTTTTATACTTTTCCACAATTCTCTGAACCTCAGATCGTCTGAAAAAACAGGTATTTTTCACAGGTTCAGTATTTTATTGGCTTTACATATTAGTAAAGAAGAAGCCAGCAATCAYATCATCAGAAATTCTATTCGGATGGCCGTCTGGAACAAGTTATATGTTTACAAATTCTCCATTAAGGATATTACATAAAAAAATTTTTTCGTCAGTTTCCTGAGACACATGATCCATCGCAAAATTATCTGAATCGTCATCGTCGTCGTCGTCTTCTGAATAATCCGGCAATTGAACGCTAGTATTGATGTTGCCGCTGACACCTGGTTAACTGAACTTTTAGAACAAAAGATTCCGGAAAATTTGAATACCGGAAGTTGTTGGCTCTGGCTCCGGTCTAGATAAAGTATTTTCAAAGTTTATCAAATTCTCATGGGATCTCATTTTATTAGAATCGAAATCATAAATTGGAGAAGATTGATTGGAGTGAGCAGATCAATAAACATAATTTGACCAGTGTTAGCACTGGTGTGAACAGTGTCTCCGTTGACTGCTTTCAAAGCTCGACGCCTTTCGTCAAATGTTGGAATTAAATATGTTTCACACAATAGACGTACTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTTTTCCACAATTCTCTGAAC</pcr_primer_p1>
		<pcr_primer_p2>GATAATTTTGCGATGGATCA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TACTTTTCCACAATTCTCTGAACCTCAGATCGTCTGAAAAAACAGGTATTTTTCACAGGTTCAGTATTTTATTGGCTTTACATATTAGTAAAGAAGAAGCCAGCAATCATATCATCAGAAATTCTATTCGGATGGCCGTCTGGAACAAGTTATATGTTTACAAATTCTCCATTAAGGATATTACATAAAAAAATTTTTTCGTCAGTTTCCTGAGACACATGATCCATCGCAAAATTATC</canonical_amplicon>
		<polymorphic_amplicon>TACTTTTCCACAATTCTCTGAACCTCAGATCGTCTGAAAAAACAGGTATTTTTCACAGGTTCAGTATTTTATTGGCTTTACATATTAGTAAAGAAGAAGCCAGCAATCAYATCATCAGAAATTCTATTCGGATGGCCGTCTGGAACAAGTTATATGTTTACAAATTCTCCATTAAGGATATTACATAAAAAAATTTTTTCGTCAGTTTCCTGAGACACATGATCCATCGCAAAATTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34478</snp_id>
        <super_contig>c009100700.Contig1</super_contig>
        <contig_pos>3497</contig_pos>
        <strand></strand>
        <context>TGGCCGTCTG[G/T]AACAAGTTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAGAAGCCAGCAATCATATCATCAGAAATTCTATTCGGATGGCCGTCTG</left_flank>
        <right_flank>AACAAGTTATATGTTTACAAATTCTCCATTAAGGATATTACATAAAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACATGTCCACTGTTTCTAGCAATATGAATGGATCCAGAGCAAGTTGATTTTAGATCAATATTGAACGTGCACCTCAAGCAACAGTTTTAAAAAGAAGAAGAAGAAGCATATGTAACCTAGCATTGATTTTACCAGATTTCGTTTCTTCAGATGGACGATATAATTGGTTGTTGAACACAATCAACGGTGAACCCTTTTGGGATGTGAGACTAAAAATCAGAACTTTTTTAGAAAACTCGATTTTGCAGAATTTCTCTGAATTTTTAACCAATGCGTACCAAAAAAAAGAGCAATTTTCATCCAAAATTTCTGGTTCGACTGTCAGCTTTCGACGAGAACATCCTACTTTCTTTTTATACTTTTCCACAATTCTCTGAACCTCAGATCGTCTGAAAAAACAGGTATTTTTCACAGGTTCAGTATTTTATTGGCTTTACATATTAGTAAAGAAGAAGCCAGCAATCATATCATCAGAAATTCTATTCGGATGGCCGTCTGGAACAAGTTATATGTTTACAAATTCTCCATTAAGGATATTACATAAAAAAATTTTTTCGTCAGTTTCCTGAGACACATGATCCATCGCAAAATTATCTGAATCGTCATCGTCGTCGTCGTCTTCTGAATAATCCGGCAATTGAACGCTAGTATTGATGTTGCCGCTGACACCTGGTTAACTGAACTTTTAGAACAAAAGATTCCGGAAAATTTGAATACCGGAAGTTGTTGGCTCTGGCTCCGGTCTAGATAAAGTATTTTCAAAGTTTATCAAATTCTCATGGGATCTCATTTTATTAGAATCGAAATCATAAATTGGAGAAGATTGATTGGAGTGAGCAGATCAATAAACATAATTTGACCAGTGTTAGCACTGGTGTGAACAGTGTCTCCGTTGACTGCTTTCAAAGCTCGACGCCTTTCGTCAAATGTTGGAATTAAATATGTTTCACACAATAGACGTACTATATTCTTGCCTTTAAAATGTCTTTTAGACCCTTT</canonical>
            <polymorphic>GACATGTCCACTGTTTCTAGCAATATGAATGGATCCAGAGCAAGTTGATTTTAGATCAATATTGAACGTGCACCTCAAGCAACAGTTTTAAAAAGAAGAAGAAGAAGCATATGTAACCTAGCATTGATTTTACCAGATTTCGTTTCTTCAGATGGACGATATAATTGGTTGTTGAACACAATCAACGGTGAACCCTTTTGGGATGTGAGACTAAAAATCAGAACTTTTTTAGAAAACTCGATTTTGCAGAATTTCTCTGAATTTTTAACCAATGCGTACCAAAAAAAAGAGCAATTTTCATCCAAAATTTCTGGTTCGACTGTCAGCTTTCGACGAGAACATCCTACTTTCTTTTTATACTTTTCCACAATTCTCTGAACCTCAGATCGTCTGAAAAAACAGGTATTTTTCACAGGTTCAGTATTTTATTGGCTTTACATATTAGTAAAGAAGAAGCCAGCAATCATATCATCAGAAATTCTATTCGGATGGCCGTCTGKAACAAGTTATATGTTTACAAATTCTCCATTAAGGATATTACATAAAAAAATTTTTTCGTCAGTTTCCTGAGACACATGATCCATCGCAAAATTATCTGAATCGTCATCGTCGTCGTCGTCTTCTGAATAATCCGGCAATTGAACGCTAGTATTGATGTTGCCGCTGACACCTGGTTAACTGAACTTTTAGAACAAAAGATTCCGGAAAATTTGAATACCGGAAGTTGTTGGCTCTGGCTCCGGTCTAGATAAAGTATTTTCAAAGTTTATCAAATTCTCATGGGATCTCATTTTATTAGAATCGAAATCATAAATTGGAGAAGATTGATTGGAGTGAGCAGATCAATAAACATAATTTGACCAGTGTTAGCACTGGTGTGAACAGTGTCTCCGTTGACTGCTTTCAAAGCTCGACGCCTTTCGTCAAATGTTGGAATTAAATATGTTTCACACAATAGACGTACTATATTCTTGCCTTTAAAATGTCTTTTAGACCCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>462 255 136 69 43 35</canonical_bands>
                <polymorphic_bands>531 255 136 43 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACTTTTCCACAATTCTCTGAAC</pcr_primer_p1>
		<pcr_primer_p2>GATAATTTTGCGATGGATCA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TACTTTTCCACAATTCTCTGAACCTCAGATCGTCTGAAAAAACAGGTATTTTTCACAGGTTCAGTATTTTATTGGCTTTACATATTAGTAAAGAAGAAGCCAGCAATCATATCATCAGAAATTCTATTCGGATGGCCGTCTGGAACAAGTTATATGTTTACAAATTCTCCATTAAGGATATTACATAAAAAAATTTTTTCGTCAGTTTCCTGAGACACATGATCCATCGCAAAATTATC</canonical_amplicon>
		<polymorphic_amplicon>TACTTTTCCACAATTCTCTGAACCTCAGATCGTCTGAAAAAACAGGTATTTTTCACAGGTTCAGTATTTTATTGGCTTTACATATTAGTAAAGAAGAAGCCAGCAATCATATCATCAGAAATTCTATTCGGATGGCCGTCTGKAACAAGTTATATGTTTACAAATTCTCCATTAAGGATATTACATAAAAAAATTTTTTCGTCAGTTTCCTGAGACACATGATCCATCGCAAAATTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34479</snp_id>
        <super_contig>c009100700.Contig1</super_contig>
        <contig_pos>3563</contig_pos>
        <strand></strand>
        <context>TCGTCAGTTT[C/T]YTGAGACACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACAAATTCTCCATTAAGGATATTACATAAAAAAATTTTTTCGTCAGTTT</left_flank>
        <right_flank>CTGAGACACATGATCCATCGCAAAATTATCTGAATCGTCATCGTCGTCGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTGCACCTCAAGCAACAGTTTTAAAAAGAAGAAGAAGAAGCATATGTAACCTAGCATTGATTTTACCAGATTTCGTTTCTTCAGATGGACGATATAATTGGTTGTTGAACACAATCAACGGTGAACCCTTTTGGGATGTGAGACTAAAAATCAGAACTTTTTTAGAAAACTCGATTTTGCAGAATTTCTCTGAATTTTTAACCAATGCGTACCAAAAAAAAGAGCAATTTTCATCCAAAATTTCTGGTTCGACTGTCAGCTTTCGACGAGAACATCCTACTTTCTTTTTATACTTTTCCACAATTCTCTGAACCTCAGATCGTCTGAAAAAACAGGTATTTTTCACAGGTTCAGTATTTTATTGGCTTTACATATTAGTAAAGAAGAAGCCAGCAATCATATCATCAGAAATTCTATTCGGATGGCCGTCTGGAACAAGTTATATGTTTACAAATTCTCCATTAAGGATATTACATAAAAAAATTTTTTCGTCAGTTTCCTGAGACACATGATCCATCGCAAAATTATCTGAATCGTCATCGTCGTCGTCGTCTTCTGAATAATCCGGCAATTGAACGCTAGTATTGATGTTGCCGCTGACACCTGGTTAACTGAACTTTTAGAACAAAAGATTCCGGAAAATTTGAATACCGGAAGTTGTTGGCTCTGGCTCCGGTCTAGATAAAGTATTTTCAAAGTTTATCAAATTCTCATGGGATCTCATTTTATTAGAATCGAAATCATAAATTGGAGAAGATTGATTGGAGTGAGCAGATCAATAAACATAATTTGACCAGTGTTAGCACTGGTGTGAACAGTGTCTCCGTTGACTGCTTTCAAAGCTCGACGCCTTTCGTCAAATGTTGGAATTAAATATGTTTCACACAATAGACGTACTATATTCTTGCCTTTAAAATGTCTTTTAGACCCTTTCGGGTCATTTTCCCCGTTTAAAGGTGGGGGGACATGAGAAAAATAATGTTCTCGAAATTCCTTTTA</canonical>
            <polymorphic>CGTGCACCTCAAGCAACAGTTTTAAAAAGAAGAAGAAGAAGCATATGTAACCTAGCATTGATTTTACCAGATTTCGTTTCTTCAGATGGACGATATAATTGGTTGTTGAACACAATCAACGGTGAACCCTTTTGGGATGTGAGACTAAAAATCAGAACTTTTTTAGAAAACTCGATTTTGCAGAATTTCTCTGAATTTTTAACCAATGCGTACCAAAAAAAAGAGCAATTTTCATCCAAAATTTCTGGTTCGACTGTCAGCTTTCGACGAGAACATCCTACTTTCTTTTTATACTTTTCCACAATTCTCTGAACCTCAGATCGTCTGAAAAAACAGGTATTTTTCACAGGTTCAGTATTTTATTGGCTTTACATATTAGTAAAGAAGAAGCCAGCAATCATATCATCAGAAATTCTATTCGGATGGCCGTCTGGAACAAGTTATATGTTTACAAATTCTCCATTAAGGATATTACATAAAAAAATTTTTTCGTCAGTTTYCTGAGACACATGATCCATCGCAAAATTATCTGAATCGTCATCGTCGTCGTCGTCTTCTGAATAATCCGGCAATTGAACGCTAGTATTGATGTTGCCGCTGACACCTGGTTAACTGAACTTTTAGAACAAAAGATTCCGGAAAATTTGAATACCGGAAGTTGTTGGCTCTGGCTCCGGTCTAGATAAAGTATTTTCAAAGTTTATCAAATTCTCATGGGATCTCATTTTATTAGAATCGAAATCATAAATTGGAGAAGATTGATTGGAGTGAGCAGATCAATAAACATAATTTGACCAGTGTTAGCACTGGTGTGAACAGTGTCTCCGTTGACTGCTTTCAAAGCTCGACGCCTTTCGTCAAATGTTGGAATTAAATATGTTTCACACAATAGACGTACTATATTCTTGCCTTTAAAATGTCTTTTAGACCCTTTCGGGTCATTTTCCCCGTTTAAAGGTGGGGGGACATGAGAAAAATAATGTTCTCGAAATTCCTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>431 306 136 69 43 15</canonical_bands>
                <polymorphic_bands>431 306 205 43 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACAGGTATTTTTCACAGGT</pcr_primer_p1>
		<pcr_primer_p2>CGGATTATTCAGAAGACGAC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AAAAACAGGTATTTTTCACAGGTTCAGTATTTTATTGGCTTTACATATTAGTAAAGAAGAAGCCAGCAATCATATCATCAGAAATTCTATTCGGATGGCCGTCTGGAACAAGTTATATGTTTACAAATTCTCCATTAAGGATATTACATAAAAAAATTTTTTCGTCAGTTTCCTGAGACACATGATCCATCGCAAAATTATCTGAATCGTCATCGTCGTCGTCGTCTTCTGAATAATCCG</canonical_amplicon>
		<polymorphic_amplicon>AAAAACAGGTATTTTTCACAGGTTCAGTATTTTATTGGCTTTACATATTAGTAAAGAAGAAGCCAGCAATCATATCATCAGAAATTCTATTCGGATGGCCGTCTGGAACAAGTTATATGTTTACAAATTCTCCATTAAGGATATTACATAAAAAAATTTTTTCGTCAGTTTYCTGAGACACATGATCCATCGCAAAATTATCTGAATCGTCATCGTCGTCGTCGTCTTCTGAATAATCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34480</snp_id>
        <super_contig>c009100700.Contig1</super_contig>
        <contig_pos>3564</contig_pos>
        <strand></strand>
        <context>CGTCAGTTTY[C/T]TGAGACACAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAAATTCTCCATTAAGGATATTACATAAAAAAATTTTTTCGTCAGTTTC</left_flank>
        <right_flank>TGAGACACATGATCCATCGCAAAATTATCTGAATCGTCATCGTCGTCGTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGCACCTCAAGCAACAGTTTTAAAAAGAAGAAGAAGAAGCATATGTAACCTAGCATTGATTTTACCAGATTTCGTTTCTTCAGATGGACGATATAATTGGTTGTTGAACACAATCAACGGTGAACCCTTTTGGGATGTGAGACTAAAAATCAGAACTTTTTTAGAAAACTCGATTTTGCAGAATTTCTCTGAATTTTTAACCAATGCGTACCAAAAAAAAGAGCAATTTTCATCCAAAATTTCTGGTTCGACTGTCAGCTTTCGACGAGAACATCCTACTTTCTTTTTATACTTTTCCACAATTCTCTGAACCTCAGATCGTCTGAAAAAACAGGTATTTTTCACAGGTTCAGTATTTTATTGGCTTTACATATTAGTAAAGAAGAAGCCAGCAATCATATCATCAGAAATTCTATTCGGATGGCCGTCTGGAACAAGTTATATGTTTACAAATTCTCCATTAAGGATATTACATAAAAAAATTTTTTCGTCAGTTTCCTGAGACACATGATCCATCGCAAAATTATCTGAATCGTCATCGTCGTCGTCGTCTTCTGAATAATCCGGCAATTGAACGCTAGTATTGATGTTGCCGCTGACACCTGGTTAACTGAACTTTTAGAACAAAAGATTCCGGAAAATTTGAATACCGGAAGTTGTTGGCTCTGGCTCCGGTCTAGATAAAGTATTTTCAAAGTTTATCAAATTCTCATGGGATCTCATTTTATTAGAATCGAAATCATAAATTGGAGAAGATTGATTGGAGTGAGCAGATCAATAAACATAATTTGACCAGTGTTAGCACTGGTGTGAACAGTGTCTCCGTTGACTGCTTTCAAAGCTCGACGCCTTTCGTCAAATGTTGGAATTAAATATGTTTCACACAATAGACGTACTATATTCTTGCCTTTAAAATGTCTTTTAGACCCTTTCGGGTCATTTTCCCCGTTTAAAGGTGGGGGGACATGAGAAAAATAATGTTCTCGAAATTCCTTTTAA</canonical>
            <polymorphic>GTGCACCTCAAGCAACAGTTTTAAAAAGAAGAAGAAGAAGCATATGTAACCTAGCATTGATTTTACCAGATTTCGTTTCTTCAGATGGACGATATAATTGGTTGTTGAACACAATCAACGGTGAACCCTTTTGGGATGTGAGACTAAAAATCAGAACTTTTTTAGAAAACTCGATTTTGCAGAATTTCTCTGAATTTTTAACCAATGCGTACCAAAAAAAAGAGCAATTTTCATCCAAAATTTCTGGTTCGACTGTCAGCTTTCGACGAGAACATCCTACTTTCTTTTTATACTTTTCCACAATTCTCTGAACCTCAGATCGTCTGAAAAAACAGGTATTTTTCACAGGTTCAGTATTTTATTGGCTTTACATATTAGTAAAGAAGAAGCCAGCAATCATATCATCAGAAATTCTATTCGGATGGCCGTCTGGAACAAGTTATATGTTTACAAATTCTCCATTAAGGATATTACATAAAAAAATTTTTTCGTCAGTTTCYTGAGACACATGATCCATCGCAAAATTATCTGAATCGTCATCGTCGTCGTCGTCTTCTGAATAATCCGGCAATTGAACGCTAGTATTGATGTTGCCGCTGACACCTGGTTAACTGAACTTTTAGAACAAAAGATTCCGGAAAATTTGAATACCGGAAGTTGTTGGCTCTGGCTCCGGTCTAGATAAAGTATTTTCAAAGTTTATCAAATTCTCATGGGATCTCATTTTATTAGAATCGAAATCATAAATTGGAGAAGATTGATTGGAGTGAGCAGATCAATAAACATAATTTGACCAGTGTTAGCACTGGTGTGAACAGTGTCTCCGTTGACTGCTTTCAAAGCTCGACGCCTTTCGTCAAATGTTGGAATTAAATATGTTTCACACAATAGACGTACTATATTCTTGCCTTTAAAATGTCTTTTAGACCCTTTCGGGTCATTTTCCCCGTTTAAAGGTGGGGGGACATGAGAAAAATAATGTTCTCGAAATTCCTTTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 314 186</canonical_bands>
                <polymorphic_bands>686 314</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACAGGTATTTTTCACAGGT</pcr_primer_p1>
		<pcr_primer_p2>CGGATTATTCAGAAGACGAC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AAAAACAGGTATTTTTCACAGGTTCAGTATTTTATTGGCTTTACATATTAGTAAAGAAGAAGCCAGCAATCATATCATCAGAAATTCTATTCGGATGGCCGTCTGGAACAAGTTATATGTTTACAAATTCTCCATTAAGGATATTACATAAAAAAATTTTTTCGTCAGTTTCCTGAGACACATGATCCATCGCAAAATTATCTGAATCGTCATCGTCGTCGTCGTCTTCTGAATAATCCG</canonical_amplicon>
		<polymorphic_amplicon>AAAAACAGGTATTTTTCACAGGTTCAGTATTTTATTGGCTTTACATATTAGTAAAGAAGAAGCCAGCAATCATATCATCAGAAATTCTATTCGGATGGCCGTCTGGAACAAGTTATATGTTTACAAATTCTCCATTAAGGATATTACATAAAAAAATTTTTTCGTCAGTTTCYTGAGACACATGATCCATCGCAAAATTATCTGAATCGTCATCGTCGTCGTCGTCTTCTGAATAATCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34481</snp_id>
        <super_contig>c009100700.Contig1</super_contig>
        <contig_pos>3599</contig_pos>
        <strand>+</strand>
        <context>TTATCTGAAT[A/C]GTCATCGTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTTCGTCAGTTTCCTGAGACACATGATCCATCGCAAAATTATCTGAAT</left_flank>
        <right_flank>GTCATCGTCGTCGTCGTCTTCTGAATAATCCGGCAATTGAACGCTAGTAT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAGCATATGTAACCTAGCATTGATTTTACCAGATTTCGTTTCTTCAGATGGACGATATAATTGGTTGTTGAACACAATCAACGGTGAACCCTTTTGGGATGTGAGACTAAAAATCAGAACTTTTTTAGAAAACTCGATTTTGCAGAATTTCTCTGAATTTTTAACCAATGCGTACCAAAAAAAAGAGCAATTTTCATCCAAAATTTCTGGTTCGACTGTCAGCTTTCGACGAGAACATCCTACTTTCTTTTTATACTTTTCCACAATTCTCTGAACCTCAGATCGTCTGAAAAAACAGGTATTTTTCACAGGTTCAGTATTTTATTGGCTTTACATATTAGTAAAGAAGAAGCCAGCAATCATATCATCAGAAATTCTATTCGGATGGCCGTCTGGAACAAGTTATATGTTTACAAATTCTCCATTAAGGATATTACATAAAAAAATTTTTTCGTCAGTTTCCTGAGACACATGATCCATCGCAAAATTATCTGAATCGTCATCGTCGTCGTCGTCTTCTGAATAATCCGGCAATTGAACGCTAGTATTGATGTTGCCGCTGACACCTGGTTAACTGAACTTTTAGAACAAAAGATTCCGGAAAATTTGAATACCGGAAGTTGTTGGCTCTGGCTCCGGTCTAGATAAAGTATTTTCAAAGTTTATCAAATTCTCATGGGATCTCATTTTATTAGAATCGAAATCATAAATTGGAGAAGATTGATTGGAGTGAGCAGATCAATAAACATAATTTGACCAGTGTTAGCACTGGTGTGAACAGTGTCTCCGTTGACTGCTTTCAAAGCTCGACGCCTTTCGTCAAATGTTGGAATTAAATATGTTTCACACAATAGACGTACTATATTCTTGCCTTTAAAATGTCTTTTAGACCCTTTCGGGTCATTTTCCCCGTTTAAAGGTGGGGGGACATGAGAAAAATAATGTTCTCGAAATTCCTTTTAAATATGCCCTGGAGGAGTTGAACATGTGGGGGCGAG</canonical>
            <polymorphic>AGAAGCATATGTAACCTAGCATTGATTTTACCAGATTTCGTTTCTTCAGATGGACGATATAATTGGTTGTTGAACACAATCAACGGTGAACCCTTTTGGGATGTGAGACTAAAAATCAGAACTTTTTTAGAAAACTCGATTTTGCAGAATTTCTCTGAATTTTTAACCAATGCGTACCAAAAAAAAGAGCAATTTTCATCCAAAATTTCTGGTTCGACTGTCAGCTTTCGACGAGAACATCCTACTTTCTTTTTATACTTTTCCACAATTCTCTGAACCTCAGATCGTCTGAAAAAACAGGTATTTTTCACAGGTTCAGTATTTTATTGGCTTTACATATTAGTAAAGAAGAAGCCAGCAATCATATCATCAGAAATTCTATTCGGATGGCCGTCTGGAACAAGTTATATGTTTACAAATTCTCCATTAAGGATATTACATAAAAAAATTTTTTCGTCAGTTTCCTGAGACACATGATCCATCGCAAAATTATCTGAATMGTCATCGTCGTCGTCGTCTTCTGAATAATCCGGCAATTGAACGCTAGTATTGATGTTGCCGCTGACACCTGGTTAACTGAACTTTTAGAACAAAAGATTCCGGAAAATTTGAATACCGGAAGTTGTTGGCTCTGGCTCCGGTCTAGATAAAGTATTTTCAAAGTTTATCAAATTCTCATGGGATCTCATTTTATTAGAATCGAAATCATAAATTGGAGAAGATTGATTGGAGTGAGCAGATCAATAAACATAATTTGACCAGTGTTAGCACTGGTGTGAACAGTGTCTCCGTTGACTGCTTTCAAAGCTCGACGCCTTTCGTCAAATGTTGGAATTAAATATGTTTCACACAATAGACGTACTATATTCTTGCCTTTAAAATGTCTTTTAGACCCTTTCGGGTCATTTTCCCCGTTTAAAGGTGGGGGGACATGAGAAAAATAATGTTCTCGAAATTCCTTTTAAATATGCCCTGGAGGAGTTGAACATGTGGGGGCGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>496 303 101 100</canonical_bands>
                <polymorphic_bands>596 303 101</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>496 303 101 100</canonical_bands>
                <polymorphic_bands>596 303 101</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAGTTATATGTTTACAAATTCTCC</pcr_primer_p1>
		<pcr_primer_p2>ACTTCCGGTATTCAAATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>224</pcr_amplicon_size>
		<canonical_amplicon>ACAAGTTATATGTTTACAAATTCTCCATTAAGGATATTACATAAAAAAATTTTTTCGTCAGTTTCCTGAGACACATGATCCATCGCAAAATTATCTGAATCGTCATCGTCGTCGTCGTCTTCTGAATAATCCGGCAATTGAACGCTAGTATTGATGTTGCCGCTGACACCTGGTTAACTGAACTTTTAGAACAAAAGATTCCGGAAAATTTGAATACCGGAAGT</canonical_amplicon>
		<polymorphic_amplicon>ACAAGTTATATGTTTACAAATTCTCCATTAAGGATATTACATAAAAAAATTTTTTCGTCAGTTTCCTGAGACACATGATCCATCGCAAAATTATCTGAATMGTCATCGTCGTCGTCGTCTTCTGAATAATCCGGCAATTGAACGCTAGTATTGATGTTGCCGCTGACACCTGGTTAACTGAACTTTTAGAACAAAAGATTCCGGAAAATTTGAATACCGGAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34482</snp_id>
        <super_contig>c009100700.Contig1</super_contig>
        <contig_pos>3648</contig_pos>
        <strand>+</strand>
        <context>GAACGCTAGT[A/G]TTGATGTTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGTCATCGTCGTCGTCGTCTTCTGAATAATCCGGCAATTGAACGCTAGT</left_flank>
        <right_flank>TTGATGTTGCCGCTGACACCTGGTTAACTGAACTTTTAGAACAAAAGATT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGACGATATAATTGGTTGTTGAACACAATCAACGGTGAACCCTTTTGGGATGTGAGACTAAAAATCAGAACTTTTTTAGAAAACTCGATTTTGCAGAATTTCTCTGAATTTTTAACCAATGCGTACCAAAAAAAAGAGCAATTTTCATCCAAAATTTCTGGTTCGACTGTCAGCTTTCGACGAGAACATCCTACTTTCTTTTTATACTTTTCCACAATTCTCTGAACCTCAGATCGTCTGAAAAAACAGGTATTTTTCACAGGTTCAGTATTTTATTGGCTTTACATATTAGTAAAGAAGAAGCCAGCAATCATATCATCAGAAATTCTATTCGGATGGCCGTCTGGAACAAGTTATATGTTTACAAATTCTCCATTAAGGATATTACATAAAAAAATTTTTTCGTCAGTTTCCTGAGACACATGATCCATCGCAAAATTATCTGAATCGTCATCGTCGTCGTCGTCTTCTGAATAATCCGGCAATTGAACGCTAGTATTGATGTTGCCGCTGACACCTGGTTAACTGAACTTTTAGAACAAAAGATTCCGGAAAATTTGAATACCGGAAGTTGTTGGCTCTGGCTCCGGTCTAGATAAAGTATTTTCAAAGTTTATCAAATTCTCATGGGATCTCATTTTATTAGAATCGAAATCATAAATTGGAGAAGATTGATTGGAGTGAGCAGATCAATAAACATAATTTGACCAGTGTTAGCACTGGTGTGAACAGTGTCTCCGTTGACTGCTTTCAAAGCTCGACGCCTTTCGTCAAATGTTGGAATTAAATATGTTTCACACAATAGACGTACTATATTCTTGCCTTTAAAATGTCTTTTAGACCCTTTCGGGTCATTTTCCCCGTTTAAAGGTGGGGGGACATGAGAAAAATAATGTTCTCGAAATTCCTTTTAAATATGCCCTGGAGGAGTTGAACATGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAA</canonical>
            <polymorphic>ATGGACGATATAATTGGTTGTTGAACACAATCAACGGTGAACCCTTTTGGGATGTGAGACTAAAAATCAGAACTTTTTTAGAAAACTCGATTTTGCAGAATTTCTCTGAATTTTTAACCAATGCGTACCAAAAAAAAGAGCAATTTTCATCCAAAATTTCTGGTTCGACTGTCAGCTTTCGACGAGAACATCCTACTTTCTTTTTATACTTTTCCACAATTCTCTGAACCTCAGATCGTCTGAAAAAACAGGTATTTTTCACAGGTTCAGTATTTTATTGGCTTTACATATTAGTAAAGAAGAAGCCAGCAATCATATCATCAGAAATTCTATTCGGATGGCCGTCTGGAACAAGTTATATGTTTACAAATTCTCCATTAAGGATATTACATAAAAAAATTTTTTCGTCAGTTTCCTGAGACACATGATCCATCGCAAAATTATCTGAATCGTCATCGTCGTCGTCGTCTTCTGAATAATCCGGCAATTGAACGCTAGTRTTGATGTTGCCGCTGACACCTGGTTAACTGAACTTTTAGAACAAAAGATTCCGGAAAATTTGAATACCGGAAGTTGTTGGCTCTGGCTCCGGTCTAGATAAAGTATTTTCAAAGTTTATCAAATTCTCATGGGATCTCATTTTATTAGAATCGAAATCATAAATTGGAGAAGATTGATTGGAGTGAGCAGATCAATAAACATAATTTGACCAGTGTTAGCACTGGTGTGAACAGTGTCTCCGTTGACTGCTTTCAAAGCTCGACGCCTTTCGTCAAATGTTGGAATTAAATATGTTTCACACAATAGACGTACTATATTCTTGCCTTTAAAATGTCTTTTAGACCCTTTCGGGTCATTTTCCCCGTTTAAAGGTGGGGGGACATGAGAAAAATAATGTTCTCGAAATTCCTTTTAAATATGCCCTGGAGGAGTTGAACATGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCATCGCAAAATTATCTG</pcr_primer_p1>
		<pcr_primer_p2>TCAATCTTCTCCAATTTATGATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCCATCGCAAAATTATCTGAATCGTCATCGTCGTCGTCGTCTTCTGAATAATCCGGCAATTGAACGCTAGTATTGATGTTGCCGCTGACACCTGGTTAACTGAACTTTTAGAACAAAAGATTCCGGAAAATTTGAATACCGGAAGTTGTTGGCTCTGGCTCCGGTCTAGATAAAGTATTTTCAAAGTTTATCAAATTCTCATGGGATCTCATTTTATTAGAATCGAAATCATAAATTGGAGAAGATTGA</canonical_amplicon>
		<polymorphic_amplicon>ATCCATCGCAAAATTATCTGAATCGTCATCGTCGTCGTCGTCTTCTGAATAATCCGGCAATTGAACGCTAGTRTTGATGTTGCCGCTGACACCTGGTTAACTGAACTTTTAGAACAAAAGATTCCGGAAAATTTGAATACCGGAAGTTGTTGGCTCTGGCTCCGGTCTAGATAAAGTATTTTCAAAGTTTATCAAATTCTCATGGGATCTCATTTTATTAGAATCGAAATCATAAATTGGAGAAGATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34483</snp_id>
        <super_contig>c009100700.Contig1</super_contig>
        <contig_pos>3676</contig_pos>
        <strand>+</strand>
        <context>ACCTGGTTAA[C/G]TGAACTTTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATCCGGCAATTGAACGCTAGTATTGATGTTGCCGCTGACACCTGGTTAA</left_flank>
        <right_flank>TGAACTTTTAGAACAAAAGATTCCGGAAAATTTGAATACCGGAAGTTGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCAACGGTGAACCCTTTTGGGATGTGAGACTAAAAATCAGAACTTTTTTAGAAAACTCGATTTTGCAGAATTTCTCTGAATTTTTAACCAATGCGTACCAAAAAAAAGAGCAATTTTCATCCAAAATTTCTGGTTCGACTGTCAGCTTTCGACGAGAACATCCTACTTTCTTTTTATACTTTTCCACAATTCTCTGAACCTCAGATCGTCTGAAAAAACAGGTATTTTTCACAGGTTCAGTATTTTATTGGCTTTACATATTAGTAAAGAAGAAGCCAGCAATCATATCATCAGAAATTCTATTCGGATGGCCGTCTGGAACAAGTTATATGTTTACAAATTCTCCATTAAGGATATTACATAAAAAAATTTTTTCGTCAGTTTCCTGAGACACATGATCCATCGCAAAATTATCTGAATCGTCATCGTCGTCGTCGTCTTCTGAATAATCCGGCAATTGAACGCTAGTATTGATGTTGCCGCTGACACCTGGTTAACTGAACTTTTAGAACAAAAGATTCCGGAAAATTTGAATACCGGAAGTTGTTGGCTCTGGCTCCGGTCTAGATAAAGTATTTTCAAAGTTTATCAAATTCTCATGGGATCTCATTTTATTAGAATCGAAATCATAAATTGGAGAAGATTGATTGGAGTGAGCAGATCAATAAACATAATTTGACCAGTGTTAGCACTGGTGTGAACAGTGTCTCCGTTGACTGCTTTCAAAGCTCGACGCCTTTCGTCAAATGTTGGAATTAAATATGTTTCACACAATAGACGTACTATATTCTTGCCTTTAAAATGTCTTTTAGACCCTTTCGGGTCATTTTCCCCGTTTAAAGGTGGGGGGACATGAGAAAAATAATGTTCTCGAAATTCCTTTTAAATATGCCCTGGAGGAGTTGAACATGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGG</canonical>
            <polymorphic>AATCAACGGTGAACCCTTTTGGGATGTGAGACTAAAAATCAGAACTTTTTTAGAAAACTCGATTTTGCAGAATTTCTCTGAATTTTTAACCAATGCGTACCAAAAAAAAGAGCAATTTTCATCCAAAATTTCTGGTTCGACTGTCAGCTTTCGACGAGAACATCCTACTTTCTTTTTATACTTTTCCACAATTCTCTGAACCTCAGATCGTCTGAAAAAACAGGTATTTTTCACAGGTTCAGTATTTTATTGGCTTTACATATTAGTAAAGAAGAAGCCAGCAATCATATCATCAGAAATTCTATTCGGATGGCCGTCTGGAACAAGTTATATGTTTACAAATTCTCCATTAAGGATATTACATAAAAAAATTTTTTCGTCAGTTTCCTGAGACACATGATCCATCGCAAAATTATCTGAATCGTCATCGTCGTCGTCGTCTTCTGAATAATCCGGCAATTGAACGCTAGTATTGATGTTGCCGCTGACACCTGGTTAASTGAACTTTTAGAACAAAAGATTCCGGAAAATTTGAATACCGGAAGTTGTTGGCTCTGGCTCCGGTCTAGATAAAGTATTTTCAAAGTTTATCAAATTCTCATGGGATCTCATTTTATTAGAATCGAAATCATAAATTGGAGAAGATTGATTGGAGTGAGCAGATCAATAAACATAATTTGACCAGTGTTAGCACTGGTGTGAACAGTGTCTCCGTTGACTGCTTTCAAAGCTCGACGCCTTTCGTCAAATGTTGGAATTAAATATGTTTCACACAATAGACGTACTATATTCTTGCCTTTAAAATGTCTTTTAGACCCTTTCGGGTCATTTTCCCCGTTTAAAGGTGGGGGGACATGAGAAAAATAATGTTCTCGAAATTCCTTTTAAATATGCCCTGGAGGAGTTGAACATGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTTAAC</site>
                <isoschizomers>
                    <enzyme>BstHPI</enzyme>
                    <enzyme>HpaI</enzyme>
                    <enzyme>KspAI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>497 284 219</canonical_bands>
                <polymorphic_bands>716 284</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>325 284 204 161 15 11</canonical_bands>
                <polymorphic_bands>365 325 284 15 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCATCGCAAAATTATCTG</pcr_primer_p1>
		<pcr_primer_p2>TCAATCTTCTCCAATTTATGATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCCATCGCAAAATTATCTGAATCGTCATCGTCGTCGTCGTCTTCTGAATAATCCGGCAATTGAACGCTAGTATTGATGTTGCCGCTGACACCTGGTTAACTGAACTTTTAGAACAAAAGATTCCGGAAAATTTGAATACCGGAAGTTGTTGGCTCTGGCTCCGGTCTAGATAAAGTATTTTCAAAGTTTATCAAATTCTCATGGGATCTCATTTTATTAGAATCGAAATCATAAATTGGAGAAGATTGA</canonical_amplicon>
		<polymorphic_amplicon>ATCCATCGCAAAATTATCTGAATCGTCATCGTCGTCGTCGTCTTCTGAATAATCCGGCAATTGAACGCTAGTATTGATGTTGCCGCTGACACCTGGTTAASTGAACTTTTAGAACAAAAGATTCCGGAAAATTTGAATACCGGAAGTTGTTGGCTCTGGCTCCGGTCTAGATAAAGTATTTTCAAAGTTTATCAAATTCTCATGGGATCTCATTTTATTAGAATCGAAATCATAAATTGGAGAAGATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34484</snp_id>
        <super_contig>c009100700.Contig1</super_contig>
        <contig_pos>3758</contig_pos>
        <strand></strand>
        <context>AAAGTATTTT[C/T]AAAGTTTATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGAATACCGGAAGTTGTTGGCTCTGGCTCCGGTCTAGATAAAGTATTTT</left_flank>
        <right_flank>AAAGTTTATCAAATTCTCATGGGATCTCATTTTATTAGAATCGAAATCAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTAACCAATGCGTACCAAAAAAAAGAGCAATTTTCATCCAAAATTTCTGGTTCGACTGTCAGCTTTCGACGAGAACATCCTACTTTCTTTTTATACTTTTCCACAATTCTCTGAACCTCAGATCGTCTGAAAAAACAGGTATTTTTCACAGGTTCAGTATTTTATTGGCTTTACATATTAGTAAAGAAGAAGCCAGCAATCATATCATCAGAAATTCTATTCGGATGGCCGTCTGGAACAAGTTATATGTTTACAAATTCTCCATTAAGGATATTACATAAAAAAATTTTTTCGTCAGTTTCCTGAGACACATGATCCATCGCAAAATTATCTGAATCGTCATCGTCGTCGTCGTCTTCTGAATAATCCGGCAATTGAACGCTAGTATTGATGTTGCCGCTGACACCTGGTTAACTGAACTTTTAGAACAAAAGATTCCGGAAAATTTGAATACCGGAAGTTGTTGGCTCTGGCTCCGGTCTAGATAAAGTATTTTCAAAGTTTATCAAATTCTCATGGGATCTCATTTTATTAGAATCGAAATCATAAATTGGAGAAGATTGATTGGAGTGAGCAGATCAATAAACATAATTTGACCAGTGTTAGCACTGGTGTGAACAGTGTCTCCGTTGACTGCTTTCAAAGCTCGACGCCTTTCGTCAAATGTTGGAATTAAATATGTTTCACACAATAGACGTACTATATTCTTGCCTTTAAAATGTCTTTTAGACCCTTTCGGGTCATTTTCCCCGTTTAAAGGTGGGGGGACATGAGAAAAATAATGTTCTCGAAATTCCTTTTAAATATGCCCTGGAGGAGTTGAACATGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAACTACAAAAAAAAC</canonical>
            <polymorphic>TTTTTAACCAATGCGTACCAAAAAAAAGAGCAATTTTCATCCAAAATTTCTGGTTCGACTGTCAGCTTTCGACGAGAACATCCTACTTTCTTTTTATACTTTTCCACAATTCTCTGAACCTCAGATCGTCTGAAAAAACAGGTATTTTTCACAGGTTCAGTATTTTATTGGCTTTACATATTAGTAAAGAAGAAGCCAGCAATCATATCATCAGAAATTCTATTCGGATGGCCGTCTGGAACAAGTTATATGTTTACAAATTCTCCATTAAGGATATTACATAAAAAAATTTTTTCGTCAGTTTCCTGAGACACATGATCCATCGCAAAATTATCTGAATCGTCATCGTCGTCGTCGTCTTCTGAATAATCCGGCAATTGAACGCTAGTATTGATGTTGCCGCTGACACCTGGTTAACTGAACTTTTAGAACAAAAGATTCCGGAAAATTTGAATACCGGAAGTTGTTGGCTCTGGCTCCGGTCTAGATAAAGTATTTTYAAAGTTTATCAAATTCTCATGGGATCTCATTTTATTAGAATCGAAATCATAAATTGGAGAAGATTGATTGGAGTGAGCAGATCAATAAACATAATTTGACCAGTGTTAGCACTGGTGTGAACAGTGTCTCCGTTGACTGCTTTCAAAGCTCGACGCCTTTCGTCAAATGTTGGAATTAAATATGTTTCACACAATAGACGTACTATATTCTTGCCTTTAAAATGTCTTTTAGACCCTTTCGGGTCATTTTCCCCGTTTAAAGGTGGGGGGACATGAGAAAAATAATGTTCTCGAAATTCCTTTTAAATATGCCCTGGAGGAGTTGAACATGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAACTACAAAAAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCATCGCAAAATTATCTG</pcr_primer_p1>
		<pcr_primer_p2>TCAATCTTCTCCAATTTATGATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCCATCGCAAAATTATCTGAATCGTCATCGTCGTCGTCGTCTTCTGAATAATCCGGCAATTGAACGCTAGTATTGATGTTGCCGCTGACACCTGGTTAACTGAACTTTTAGAACAAAAGATTCCGGAAAATTTGAATACCGGAAGTTGTTGGCTCTGGCTCCGGTCTAGATAAAGTATTTTCAAAGTTTATCAAATTCTCATGGGATCTCATTTTATTAGAATCGAAATCATAAATTGGAGAAGATTGA</canonical_amplicon>
		<polymorphic_amplicon>ATCCATCGCAAAATTATCTGAATCGTCATCGTCGTCGTCGTCTTCTGAATAATCCGGCAATTGAACGCTAGTATTGATGTTGCCGCTGACACCTGGTTAACTGAACTTTTAGAACAAAAGATTCCGGAAAATTTGAATACCGGAAGTTGTTGGCTCTGGCTCCGGTCTAGATAAAGTATTTTYAAAGTTTATCAAATTCTCATGGGATCTCATTTTATTAGAATCGAAATCATAAATTGGAGAAGATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34485</snp_id>
        <super_contig>c009100700.Contig1</super_contig>
        <contig_pos>3863</contig_pos>
        <strand></strand>
        <context>TTTGACCAGT[G/A]TTAGCACTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGGAGAAGATTGATTGGAGTGAGCAGATCAATAAACATAATTTGACCAGT</left_flank>
        <right_flank>TTAGCACTGGTGTGAACAGTGTCTCCGTTGACTGCTTTCAAAGCTCGACG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAATTCTCTGAACCTCAGATCGTCTGAAAAAACAGGTATTTTTCACAGGTTCAGTATTTTATTGGCTTTACATATTAGTAAAGAAGAAGCCAGCAATCATATCATCAGAAATTCTATTCGGATGGCCGTCTGGAACAAGTTATATGTTTACAAATTCTCCATTAAGGATATTACATAAAAAAATTTTTTCGTCAGTTTCCTGAGACACATGATCCATCGCAAAATTATCTGAATCGTCATCGTCGTCGTCGTCTTCTGAATAATCCGGCAATTGAACGCTAGTATTGATGTTGCCGCTGACACCTGGTTAACTGAACTTTTAGAACAAAAGATTCCGGAAAATTTGAATACCGGAAGTTGTTGGCTCTGGCTCCGGTCTAGATAAAGTATTTTCAAAGTTTATCAAATTCTCATGGGATCTCATTTTATTAGAATCGAAATCATAAATTGGAGAAGATTGATTGGAGTGAGCAGATCAATAAACATAATTTGACCAGTGTTAGCACTGGTGTGAACAGTGTCTCCGTTGACTGCTTTCAAAGCTCGACGCCTTTCGTCAAATGTTGGAATTAAATATGTTTCACACAATAGACGTACTATATTCTTGCCTTTAAAATGTCTTTTAGACCCTTTCGGGTCATTTTCCCCGTTTAAAGGTGGGGGGACATGAGAAAAATAATGTTCTCGAAATTCCTTTTAAATATGCCCTGGAGGAGTTGAACATGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAACTACAAAAAAAACTACGAAAAATCTCCTGTCCCCCAACCTTTAATTCCTCTTCATAACACTGTTCCGATTTTGACAAAAATTCAATTTTCTGTTTTTTATCCATTATTATTGATGAAA</canonical>
            <polymorphic>ACAATTCTCTGAACCTCAGATCGTCTGAAAAAACAGGTATTTTTCACAGGTTCAGTATTTTATTGGCTTTACATATTAGTAAAGAAGAAGCCAGCAATCATATCATCAGAAATTCTATTCGGATGGCCGTCTGGAACAAGTTATATGTTTACAAATTCTCCATTAAGGATATTACATAAAAAAATTTTTTCGTCAGTTTCCTGAGACACATGATCCATCGCAAAATTATCTGAATCGTCATCGTCGTCGTCGTCTTCTGAATAATCCGGCAATTGAACGCTAGTATTGATGTTGCCGCTGACACCTGGTTAACTGAACTTTTAGAACAAAAGATTCCGGAAAATTTGAATACCGGAAGTTGTTGGCTCTGGCTCCGGTCTAGATAAAGTATTTTCAAAGTTTATCAAATTCTCATGGGATCTCATTTTATTAGAATCGAAATCATAAATTGGAGAAGATTGATTGGAGTGAGCAGATCAATAAACATAATTTGACCAGTRTTAGCACTGGTGTGAACAGTGTCTCCGTTGACTGCTTTCAAAGCTCGACGCCTTTCGTCAAATGTTGGAATTAAATATGTTTCACACAATAGACGTACTATATTCTTGCCTTTAAAATGTCTTTTAGACCCTTTCGGGTCATTTTCCCCGTTTAAAGGTGGGGGGACATGAGAAAAATAATGTTCTCGAAATTCCTTTTAAATATGCCCTGGAGGAGTTGAACATGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAACTACAAAAAAAACTACGAAAAATCTCCTGTCCCCCAACCTTTAATTCCTCTTCATAACACTGTTCCGATTTTGACAAAAATTCAATTTTCTGTTTTTTATCCATTATTATTGATGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>167 162 95 80 74 68 63 59 48 46 30 23 21 19 17 7 6 6 5 2 2</canonical_bands>
                <polymorphic_bands>167 162 95 80 74 68 63 59 48 46 36 23 21 19 17 7 6 5 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGAGAAGATTGATTGGAGT</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGAATTTCGAGAACATTAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTGGAGAAGATTGATTGGAGTGAGCAGATCAATAAACATAATTTGACCAGTGTTAGCACTGGTGTGAACAGTGTCTCCGTTGACTGCTTTCAAAGCTCGACGCCTTTCGTCAAATGTTGGAATTAAATATGTTTCACACAATAGACGTACTATATTCTTGCCTTTAAAATGTCTTTTAGACCCTTTCGGGTCATTTTCCCCGTTTAAAGGTGGGGGGACATGAGAAAAATAATGTTCTCGAAATTCCTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGGAGAAGATTGATTGGAGTGAGCAGATCAATAAACATAATTTGACCAGTRTTAGCACTGGTGTGAACAGTGTCTCCGTTGACTGCTTTCAAAGCTCGACGCCTTTCGTCAAATGTTGGAATTAAATATGTTTCACACAATAGACGTACTATATTCTTGCCTTTAAAATGTCTTTTAGACCCTTTCGGGTCATTTTCCCCGTTTAAAGGTGGGGGGACATGAGAAAAATAATGTTCTCGAAATTCCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34486</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>6868</contig_pos>
        <strand></strand>
        <context>tgtaagagat[T/A]tcaaaaagtg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTAAAAAGAACCTCCATTGGACCCGAATTATCTCGGTTACTGTAAGAGAT</left_flank>
        <right_flank>TCAAAAAGTGATCAACTGATAAAATATTGGAAATTTTATGATTAAAATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGATCCTTCGTCAGAGAGTTCATTGTTCCAAGATCCTTGAAGCCTCTGCTACTGTATTTCTTTCTTGTTTTCAGTCTGAACCATCAGGAACACTCCAAATAATCTTCTCATCTCTCTGCATGAATTGTCTGATTTCAGTTCCAGGAATTGTCATAGGGTCCTCCACCAGCTAGACCTCTAGCTCGAAGCCTAGCTCCAGCAGCTCCAGAGCCATCGAGCCCTGCTGGCCCAGGCTCCGCCCACTTCTCGGGAGTGATTCTTCCCACCACTTTCCTCTTCTTTTATAGGAATTTTGGGGGGGGGGGGGCTGAGGCCAATGGGGTCTAGGGTCATAGGCGTTTAAAATTGAGAAAGTATTTTTCTTTTTTCATCCAGAAAAATAAAGTTTTTCATCACGTTTAAATAATTATTGAATTTTCACTTTTGAAATCTATACAACTCCTTACTATTAAAAAGAACCTCCATTGGACCCGAATTATCTCGGTTACTGTAAGAGATTTCAAAAAGTGATCAACTGATAAAATATTGGAAATTTTATGATTAAAATTTTGTCAGTTAACAATTTCTCGATATCTCTTTCAAGAACGAAGATAAATGAGCTTAAAGACAACATATCGGTCTACAGCGTAGCTCAACCGTCAAGCTTTTCGAAATTTAAACCCATATAACTCATTTCCTGTGAGAGATATCAAAAAGTGATCGACTAAAAAATTGTTAACAATATTATGATAAGCATTTTATCAGTTGATCACTTTTTGATATCTTTCACAGGAAACGAGATATATTTGATTAAAGTTAAGAGACACCGTAAGCTTTATAATAGCTTTGAGCCAATTTATCTCATTCCCTGTGAGAGATATCAAAAGGTGCTCTACTAACAAAATGTTTATCATAAAATTAGCAAGATTTTATCAGTTGACCACTTTTTAATATCTGCTACAGTAACCGAGATAAATTGAGTAGAATTTAAATGTTGGTATGTCGAAATTTCGGTTTTTA</canonical>
            <polymorphic>GGGATCCTTCGTCAGAGAGTTCATTGTTCCAAGATCCTTGAAGCCTCTGCTACTGTATTTCTTTCTTGTTTTCAGTCTGAACCATCAGGAACACTCCAAATAATCTTCTCATCTCTCTGCATGAATTGTCTGATTTCAGTTCCAGGAATTGTCATAGGGTCCTCCACCAGCTAGACCTCTAGCTCGAAGCCTAGCTCCAGCAGCTCCAGAGCCATCGAGCCCTGCTGGCCCAGGCTCCGCCCACTTCTCGGGAGTGATTCTTCCCACCACTTTCCTCTTCTTTTATAGGAATTTTGGGGGGGGGGGGGCTGAGGCCAATGGGGTCTAGGGTCATAGGCGTTTAAAATTGAGAAAGTATTTTTCTTTTTTCATCCAGAAAAATAAAGTTTTTCATCACGTTTAAATAATTATTGAATTTTCACTTTTGAAATCTATACAACTCCTTACTATTAAAAAGAACCTCCATTGGACCCGAATTATCTCGGTTACTGTAAGAGATWTCAAAAAGTGATCAACTGATAAAATATTGGAAATTTTATGATTAAAATTTTGTCAGTTAACAATTTCTCGATATCTCTTTCAAGAACGAAGATAAATGAGCTTAAAGACAACATATCGGTCTACAGCGTAGCTCAACCGTCAAGCTTTTCGAAATTTAAACCCATATAACTCATTTCCTGTGAGAGATATCAAAAAGTGATCGACTAAAAAATTGTTAACAATATTATGATAAGCATTTTATCAGTTGATCACTTTTTGATATCTTTCACAGGAAACGAGATATATTTGATTAAAGTTAAGAGACACCGTAAGCTTTATAATAGCTTTGAGCCAATTTATCTCATTCCCTGTGAGAGATATCAAAAGGTGCTCTACTAACAAAATGTTTATCATAAAATTAGCAAGATTTTATCAGTTGACCACTTTTTAATATCTGCTACAGTAACCGAGATAAATTGAGTAGAATTTAAATGTTGGTATGTCGAAATTTCGGTTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCGTTTAAAATTGAGAAAGTAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGATTGAATTGGAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>733</pcr_amplicon_size>
		<canonical_amplicon>GGCGTTTAAAATTGAGAAAGTATTTTTCTTTTTTCATCCAGAAAAATAAAGTTTTTCATCACGTTTAAATAATTATTGAATTTTCACTTTTGAAATCTATACAACTCCTTACTATTAAAAAGAACCTCCATTGGACCCGAATTATCTCGGTTACTGTAAGAGATTTCAAAAAGTGATCAACTGAT</canonical_amplicon>
		<polymorphic_amplicon>GGCGTTTAAAATTGAGAAAGTATTTTTCTTTTTTCATCCAGAAAAATAAAGTTTTTCATCACGTTTAAATAATTATTGAATTTTCACTTTTGAAATCTATACAACTCCTTACTATTAAAAAGAACCTCCATTGGACCCGAATTATCTCGGTTACTGTAAGAGATWTCAAAAAGTGATCAACTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34487</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>7008</contig_pos>
        <strand></strand>
        <context>agctcaaccg[T/A]caagcttttc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGATAAATGAGCTTAAAGACAACATATCGGTCTACAGCGTAGCTCAACCG</left_flank>
        <right_flank>CAAGCTTTTCGAAATTTAAACCCATATAACTCATTTCCTGTGAGAGATAT</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAGGAATTGTCATAGGGTCCTCCACCAGCTAGACCTCTAGCTCGAAGCCTAGCTCCAGCAGCTCCAGAGCCATCGAGCCCTGCTGGCCCAGGCTCCGCCCACTTCTCGGGAGTGATTCTTCCCACCACTTTCCTCTTCTTTTATAGGAATTTTGGGGGGGGGGGGGCTGAGGCCAATGGGGTCTAGGGTCATAGGCGTTTAAAATTGAGAAAGTATTTTTCTTTTTTCATCCAGAAAAATAAAGTTTTTCATCACGTTTAAATAATTATTGAATTTTCACTTTTGAAATCTATACAACTCCTTACTATTAAAAAGAACCTCCATTGGACCCGAATTATCTCGGTTACTGTAAGAGATTTCAAAAAGTGATCAACTGATAAAATATTGGAAATTTTATGATTAAAATTTTGTCAGTTAACAATTTCTCGATATCTCTTTCAAGAACGAAGATAAATGAGCTTAAAGACAACATATCGGTCTACAGCGTAGCTCAACCGTCAAGCTTTTCGAAATTTAAACCCATATAACTCATTTCCTGTGAGAGATATCAAAAAGTGATCGACTAAAAAATTGTTAACAATATTATGATAAGCATTTTATCAGTTGATCACTTTTTGATATCTTTCACAGGAAACGAGATATATTTGATTAAAGTTAAGAGACACCGTAAGCTTTATAATAGCTTTGAGCCAATTTATCTCATTCCCTGTGAGAGATATCAAAAGGTGCTCTACTAACAAAATGTTTATCATAAAATTAGCAAGATTTTATCAGTTGACCACTTTTTAATATCTGCTACAGTAACCGAGATAAATTGAGTAGAATTTAAATGTTGGTATGTCGAAATTTCGGTTTTTAATTTTTTTTTTTTAATTTTCAATTTTTTTGAAATTCTAATTTTTCTTCAATTTCCAATTCAATCAAAACGATGAAAATTGTTGGAAAAAATTCAGAGGGCCGGCTCAGGTTACGGTAATAGCTGTTTTCCCATGCTGCGC</canonical>
            <polymorphic>TCCAGGAATTGTCATAGGGTCCTCCACCAGCTAGACCTCTAGCTCGAAGCCTAGCTCCAGCAGCTCCAGAGCCATCGAGCCCTGCTGGCCCAGGCTCCGCCCACTTCTCGGGAGTGATTCTTCCCACCACTTTCCTCTTCTTTTATAGGAATTTTGGGGGGGGGGGGGCTGAGGCCAATGGGGTCTAGGGTCATAGGCGTTTAAAATTGAGAAAGTATTTTTCTTTTTTCATCCAGAAAAATAAAGTTTTTCATCACGTTTAAATAATTATTGAATTTTCACTTTTGAAATCTATACAACTCCTTACTATTAAAAAGAACCTCCATTGGACCCGAATTATCTCGGTTACTGTAAGAGATTTCAAAAAGTGATCAACTGATAAAATATTGGAAATTTTATGATTAAAATTTTGTCAGTTAACAATTTCTCGATATCTCTTTCAAGAACGAAGATAAATGAGCTTAAAGACAACATATCGGTCTACAGCGTAGCTCAACCGWCAAGCTTTTCGAAATTTAAACCCATATAACTCATTTCCTGTGAGAGATATCAAAAAGTGATCGACTAAAAAATTGTTAACAATATTATGATAAGCATTTTATCAGTTGATCACTTTTTGATATCTTTCACAGGAAACGAGATATATTTGATTAAAGTTAAGAGACACCGTAAGCTTTATAATAGCTTTGAGCCAATTTATCTCATTCCCTGTGAGAGATATCAAAAGGTGCTCTACTAACAAAATGTTTATCATAAAATTAGCAAGATTTTATCAGTTGACCACTTTTTAATATCTGCTACAGTAACCGAGATAAATTGAGTAGAATTTAAATGTTGGTATGTCGAAATTTCGGTTTTTAATTTTTTTTTTTTAATTTTCAATTTTTTTGAAATTCTAATTTTTCTTCAATTTCCAATTCAATCAAAACGATGAAAATTGTTGGAAAAAATTCAGAGGGCCGGCTCAGGTTACGGTAATAGCTGTTTTCCCATGCTGCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>350 172 170 148 134 26</canonical_bands>
                <polymorphic_bands>350 318 172 134 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCGTTTAAAATTGAGAAAGTAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGATTGAATTGGAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>733</pcr_amplicon_size>
		<canonical_amplicon>GGCGTTTAAAATTGAGAAAGTATTTTTCTTTTTTCATCCAGAAAAATAAAGTTTTTCATCACGTTTAAATAATTATTGAATTTTCACTTTTGAAATCTATACAACTCCTTACTATTAAAAAGAACCTCCATTGGACCCGAATTATCTCGGTTACTGTAAGAGATTTCAAAAAGTGATCAACTGATAAAATATTGGAAATTTTATGATTAAAATTTTGTCAGTTAACAATTTCTCGATATCTCTTTCAAGAACGAAGATAAATGAGCTTAAAGACAACATATCGGTCTACAGCGTAGCTCAACCGTCAAGCTTTTCGAAATTTAAACCCATATAACTCATTTCCTGTGAGAGATATCAAAAAGTGATCGACTAAAAAATTGTTAACAATATTATGATAAGCATTTTATCAGTTGATCACTTTTTGATATCTTTCACAGGAAACGAGATATATTTGATTAAAGTTAAGAGACACCGTAAGCTTTATAATAGCTTTGAGCCAATTTATCTCATTCCCTGTGAGAGATATCAAAAGGTGCTCTACTAACAAAATGTTTATCATAAAATTAGCAAGATTTTATCAGTTGACCACTTTTTAATATCTGCTACAGTAACCGAGATAAATTGAGTAGAATTTAAATGTTGGTATGTCGAAATTTCGGTTTTTAATTTTTTTTTTTTAATTTTCAATTTTTTTGAAATTCTAATTTTTCTTCAATTTCCAATTCAATCAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGCGTTTAAAATTGAGAAAGTATTTTTCTTTTTTCATCCAGAAAAATAAAGTTTTTCATCACGTTTAAATAATTATTGAATTTTCACTTTTGAAATCTATACAACTCCTTACTATTAAAAAGAACCTCCATTGGACCCGAATTATCTCGGTTACTGTAAGAGATTTCAAAAAGTGATCAACTGATAAAATATTGGAAATTTTATGATTAAAATTTTGTCAGTTAACAATTTCTCGATATCTCTTTCAAGAACGAAGATAAATGAGCTTAAAGACAACATATCGGTCTACAGCGTAGCTCAACCGWCAAGCTTTTCGAAATTTAAACCCATATAACTCATTTCCTGTGAGAGATATCAAAAAGTGATCGACTAAAAAATTGTTAACAATATTATGATAAGCATTTTATCAGTTGATCACTTTTTGATATCTTTCACAGGAAACGAGATATATTTGATTAAAGTTAAGAGACACCGTAAGCTTTATAATAGCTTTGAGCCAATTTATCTCATTCCCTGTGAGAGATATCAAAAGGTGCTCTACTAACAAAATGTTTATCATAAAATTAGCAAGATTTTATCAGTTGACCACTTTTTAATATCTGCTACAGTAACCGAGATAAATTGAGTAGAATTTAAATGTTGGTATGTCGAAATTTCGGTTTTTAATTTTTTTTTTTTAATTTTCAATTTTTTTGAAATTCTAATTTTTCTTCAATTTCCAATTCAATCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34488</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>7177</contig_pos>
        <strand>+</strand>
        <context>aagagACACC[A/G]TAAGCTTTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATATCTTTCACAGGAAACGAGATATATTTGATTAAAGTTAAGAGACACC</left_flank>
        <right_flank>TAAGCTTTATAATAGCTTTGAGCCAATTTATCTCATTCCCTGTGAGAGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGGCCAATGGGGTCTAGGGTCATAGGCGTTTAAAATTGAGAAAGTATTTTTCTTTTTTCATCCAGAAAAATAAAGTTTTTCATCACGTTTAAATAATTATTGAATTTTCACTTTTGAAATCTATACAACTCCTTACTATTAAAAAGAACCTCCATTGGACCCGAATTATCTCGGTTACTGTAAGAGATTTCAAAAAGTGATCAACTGATAAAATATTGGAAATTTTATGATTAAAATTTTGTCAGTTAACAATTTCTCGATATCTCTTTCAAGAACGAAGATAAATGAGCTTAAAGACAACATATCGGTCTACAGCGTAGCTCAACCGTCAAGCTTTTCGAAATTTAAACCCATATAACTCATTTCCTGTGAGAGATATCAAAAAGTGATCGACTAAAAAATTGTTAACAATATTATGATAAGCATTTTATCAGTTGATCACTTTTTGATATCTTTCACAGGAAACGAGATATATTTGATTAAAGTTAAGAGACACCGTAAGCTTTATAATAGCTTTGAGCCAATTTATCTCATTCCCTGTGAGAGATATCAAAAGGTGCTCTACTAACAAAATGTTTATCATAAAATTAGCAAGATTTTATCAGTTGACCACTTTTTAATATCTGCTACAGTAACCGAGATAAATTGAGTAGAATTTAAATGTTGGTATGTCGAAATTTCGGTTTTTAATTTTTTTTTTTTAATTTTCAATTTTTTTGAAATTCTAATTTTTCTTCAATTTCCAATTCAATCAAAACGATGAAAATTGTTGGAAAAAATTCAGAGGGCCGGCTCAGGTTACGGTAATAGCTGTTTTCCCATGCTGCGCCTTTAAATATGGATTTTTTTTTCAAAAACTGAAAAATTACTATTTCATGGGAAACCAAAATTTTTAGTAAATTTAGAATTTTCTCGATTATATATGAAAAAAGCACGCTTAAAATAATTGTTATAACCTCCCCAACAATCAGTACGATTATTATGAAAAAAGCACGCTT</canonical>
            <polymorphic>TGAGGCCAATGGGGTCTAGGGTCATAGGCGTTTAAAATTGAGAAAGTATTTTTCTTTTTTCATCCAGAAAAATAAAGTTTTTCATCACGTTTAAATAATTATTGAATTTTCACTTTTGAAATCTATACAACTCCTTACTATTAAAAAGAACCTCCATTGGACCCGAATTATCTCGGTTACTGTAAGAGATTTCAAAAAGTGATCAACTGATAAAATATTGGAAATTTTATGATTAAAATTTTGTCAGTTAACAATTTCTCGATATCTCTTTCAAGAACGAAGATAAATGAGCTTAAAGACAACATATCGGTCTACAGCGTAGCTCAACCGTCAAGCTTTTCGAAATTTAAACCCATATAACTCATTTCCTGTGAGAGATATCAAAAAGTGATCGACTAAAAAATTGTTAACAATATTATGATAAGCATTTTATCAGTTGATCACTTTTTGATATCTTTCACAGGAAACGAGATATATTTGATTAAAGTTAAGAGACACCRTAAGCTTTATAATAGCTTTGAGCCAATTTATCTCATTCCCTGTGAGAGATATCAAAAGGTGCTCTACTAACAAAATGTTTATCATAAAATTAGCAAGATTTTATCAGTTGACCACTTTTTAATATCTGCTACAGTAACCGAGATAAATTGAGTAGAATTTAAATGTTGGTATGTCGAAATTTCGGTTTTTAATTTTTTTTTTTTAATTTTCAATTTTTTTGAAATTCTAATTTTTCTTCAATTTCCAATTCAATCAAAACGATGAAAATTGTTGGAAAAAATTCAGAGGGCCGGCTCAGGTTACGGTAATAGCTGTTTTCCCATGCTGCGCCTTTAAATATGGATTTTTTTTTCAAAAACTGAAAAATTACTATTTCATGGGAAACCAAAATTTTTAGTAAATTTAGAATTTTCTCGATTATATATGAAAAAAGCACGCTTAAAATAATTGTTATAACCTCCCCAACAATCAGTACGATTATTATGAAAAAAGCACGCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>195 181 172 170 148 134</canonical_bands>
                <polymorphic_bands>304 195 181 172 148</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCGTTTAAAATTGAGAAAGTAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGATTGAATTGGAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>733</pcr_amplicon_size>
		<canonical_amplicon>GGCGTTTAAAATTGAGAAAGTATTTTTCTTTTTTCATCCAGAAAAATAAAGTTTTTCATCACGTTTAAATAATTATTGAATTTTCACTTTTGAAATCTATACAACTCCTTACTATTAAAAAGAACCTCCATTGGACCCGAATTATCTCGGTTACTGTAAGAGATTTCAAAAAGTGATCAACTGATAAAATATTGGAAATTTTATGATTAAAATTTTGTCAGTTAACAATTTCTCGATATCTCTTTCAAGAACGAAGATAAATGAGCTTAAAGACAACATATCGGTCTACAGCGTAGCTCAACCGTCAAGCTTTTCGAAATTTAAACCCATATAACTCATTTCCTGTGAGAGATATCAAAAAGTGATCGACTAAAAAATTGTTAACAATATTATGATAAGCATTTTATCAGTTGATCACTTTTTGATATCTTTCACAGGAAACGAGATATATTTGATTAAAGTTAAGAGACACCGTAAGCTTTATAATAGCTTTGAGCCAATTTATCTCATTCCCTGTGAGAGATATCAAAAGGTGCTCTACTAACAAAATGTTTATCATAAAATTAGCAAGATTTTATCAGTTGACCACTTTTTAATATCTGCTACAGTAACCGAGATAAATTGAGTAGAATTTAAATGTTGGTATGTCGAAATTTCGGTTTTTAATTTTTTTTTTTTAATTTTCAATTTTTTTGAAATTCTAATTTTTCTTCAATTTCCAATTCAATCAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGCGTTTAAAATTGAGAAAGTATTTTTCTTTTTTCATCCAGAAAAATAAAGTTTTTCATCACGTTTAAATAATTATTGAATTTTCACTTTTGAAATCTATACAACTCCTTACTATTAAAAAGAACCTCCATTGGACCCGAATTATCTCGGTTACTGTAAGAGATTTCAAAAAGTGATCAACTGATAAAATATTGGAAATTTTATGATTAAAATTTTGTCAGTTAACAATTTCTCGATATCTCTTTCAAGAACGAAGATAAATGAGCTTAAAGACAACATATCGGTCTACAGCGTAGCTCAACCGTCAAGCTTTTCGAAATTTAAACCCATATAACTCATTTCCTGTGAGAGATATCAAAAAGTGATCGACTAAAAAATTGTTAACAATATTATGATAAGCATTTTATCAGTTGATCACTTTTTGATATCTTTCACAGGAAACGAGATATATTTGATTAAAGTTAAGAGACACCRTAAGCTTTATAATAGCTTTGAGCCAATTTATCTCATTCCCTGTGAGAGATATCAAAAGGTGCTCTACTAACAAAATGTTTATCATAAAATTAGCAAGATTTTATCAGTTGACCACTTTTTAATATCTGCTACAGTAACCGAGATAAATTGAGTAGAATTTAAATGTTGGTATGTCGAAATTTCGGTTTTTAATTTTTTTTTTTTAATTTTCAATTTTTTTGAAATTCTAATTTTTCTTCAATTTCCAATTCAATCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34489</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>16217</contig_pos>
        <strand>+</strand>
        <context>AACGACAATG[C/T]CTGGGTGAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGAAAAAAGTCGAAGAACTCGTGCCATTTTCAATTGGAAAACGACAATG</left_flank>
        <right_flank>CTGGGTGAAGGATTGGCTCGAATGGAATTATTTCTATTTTTTGCCAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTATAACAACTAGCGATCGACCGAATCTCAACTATGTTATGGCTACAATGAATGTGAGTTCTCTTACTTTTCAAAGCTACAGTATACCCAAGGGAACAACACGCTCTAACAGAATCTGATTTTGGTAACCAAAATTGAATATTTTTTGAAACAGTAAATTTTTTTTGGCTCCAAAAGTTAAAATTCTGAAAAAAAACTGTTTCCAGGAATCCCAACGTCTTGCCAATCTCCTTCCAATGAATCTCTCCCGTACCACGACTGCTGAGGTGGAAATCGGTGGCTACCGTATCCCCAAAGATACAGTAATCACTCCACAAATCAGTTCAGTGATGTATGATCCAGAGGTACCATAGGCCCCTACAGTAATCCAGAAGAACCAAATATTTTCAGATCTTCCCAGAACCCTATGAATTCCGTCCATCTCGATTTTTGGATTCTCTGGGAAATTTGAAAAAAGTCGAAGAACTCGTGCCATTTTCAATTGGAAAACGACAATGTCTGGGTGAAGGATTGGCTCGAATGGAATTATTTCTATTTTTTGCCAATTTATTCAACAAATTTGATATTAAATTGCACCCGGATAATTTGAATCCAAGTATTGAGAAAGAGTGTGGTGTTACGATGAAGGCCAAGAATTTCAGAGTTGTTGTCAAAAAGAGATATTGATTTTTTCTGTAAATAAACCTTTTTAAAATGTTTTATAATTGTTTTTTCGTCTATCTGAACTTGCCGATTTATGACTGTTTCGAGTTATTTCTAATAGTAAATGGAAATGCTTAAAGACTGAAACAGTAAGTTTAAAGTTTACCAGAATGAGCGTCAAGTGTCATTTTTGTTCCGGTAGTTCTTATTGGAAACCAAATAATCCGATATTTTGAATTCTAAGAGTCCTAACTTTCGAGCTGAATTATCTCAATTTCTACATGAGTTATCTAAAATCAGTCGGCTGATAACATGACAAGTTTTTGGTATTGCTTGTGGAAACTGAGATAATTGAG</canonical>
            <polymorphic>AATTATAACAACTAGCGATCGACCGAATCTCAACTATGTTATGGCTACAATGAATGTGAGTTCTCTTACTTTTCAAAGCTACAGTATACCCAAGGGAACAACACGCTCTAACAGAATCTGATTTTGGTAACCAAAATTGAATATTTTTTGAAACAGTAAATTTTTTTTGGCTCCAAAAGTTAAAATTCTGAAAAAAAACTGTTTCCAGGAATCCCAACGTCTTGCCAATCTCCTTCCAATGAATCTCTCCCGTACCACGACTGCTGAGGTGGAAATCGGTGGCTACCGTATCCCCAAAGATACAGTAATCACTCCACAAATCAGTTCAGTGATGTATGATCCAGAGGTACCATAGGCCCCTACAGTAATCCAGAAGAACCAAATATTTTCAGATCTTCCCAGAACCCTATGAATTCCGTCCATCTCGATTTTTGGATTCTCTGGGAAATTTGAAAAAAGTCGAAGAACTCGTGCCATTTTCAATTGGAAAACGACAATGYCTGGGTGAAGGATTGGCTCGAATGGAATTATTTCTATTTTTTGCCAATTTATTCAACAAATTTGATATTAAATTGCACCCGGATAATTTGAATCCAAGTATTGAGAAAGAGTGTGGTGTTACGATGAAGGCCAAGAATTTCAGAGTTGTTGTCAAAAAGAGATATTGATTTTTTCTGTAAATAAACCTTTTTAAAATGTTTTATAATTGTTTTTTCGTCTATCTGAACTTGCCGATTTATGACTGTTTCGAGTTATTTCTAATAGTAAATGGAAATGCTTAAAGACTGAAACAGTAAGTTTAAAGTTTACCAGAATGAGCGTCAAGTGTCATTTTTGTTCCGGTAGTTCTTATTGGAAACCAAATAATCCGATATTTTGAATTCTAAGAGTCCTAACTTTCGAGCTGAATTATCTCAATTTCTACATGAGTTATCTAAAATCAGTCGGCTGATAACATGACAAGTTTTTGGTATTGCTTGTGGAAACTGAGATAATTGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNGTC</site>
                <isoschizomers>
                    <enzyme>AspI</enzyme>
                    <enzyme>PflFI</enzyme>
                    <enzyme>PsyI</enzyme>
                    <enzyme>TelI</enzyme>
                    <enzyme>Tth111I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAAGAACCAAATATTTTCAGA</pcr_primer_p1>
		<pcr_primer_p2>AACACCACACTCTTTCTCAATAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGAAGAACCAAATATTTTCAGATCTTCCCAGAACCCTATGAATTCCGTCCATCTCGATTTTTGGATTCTCTGGGAAATTTGAAAAAAGTCGAAGAACTCGTGCCATTTTCAATTGGAAAACGACAATGTCTGGGTGAAGGATTGGCTCGAATGGAATTATTTCTATTTTTTGCCAATTTATTCAACAAATTTGATATTAAATTGCACCCGGATAATTTGAATCCAAGTATTGAGAAAGAGTGTGGTGTT</canonical_amplicon>
		<polymorphic_amplicon>CAGAAGAACCAAATATTTTCAGATCTTCCCAGAACCCTATGAATTCCGTCCATCTCGATTTTTGGATTCTCTGGGAAATTTGAAAAAAGTCGAAGAACTCGTGCCATTTTCAATTGGAAAACGACAATGYCTGGGTGAAGGATTGGCTCGAATGGAATTATTTCTATTTTTTGCCAATTTATTCAACAAATTTGATATTAAATTGCACCCGGATAATTTGAATCCAAGTATTGAGAAAGAGTGTGGTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34490</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>44903</contig_pos>
        <strand>+</strand>
        <context>GCCCTTCCGT[C/T]AATTTCTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTTGAGTCAAATTAAGCCGCAAGCTCCACGCCTTGTGGTGCCCTTCCGT</left_flank>
        <right_flank>AATTTCTTTAAGTTTCAGCTTTGCAACCATACTACCCCCGGAACCGAAAG</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGCTTATGAACAAAAATTTTCCAATATCTCGATCAATTTCATTTTAAAGTACTATATGTGACGAAGGTAAGTTTTAAGCTTTGTATTTATATTTTTAAAATGTATTTATATTTATTATTATATTTATTATTTATGTATTTTTATTTAATGTATTTATATTTTTAAATAAACATTGAAACGTTCAATTTCTGTGCATCAAGTGTTCTTTTTTATCACCGAATCATTACTAATAACATTCACCAGATTCCGTATGTGCGTATGTATGTCGCGTGACGGTTAACCCATTCAAAGTTAACCGATTGAGCTAACACCTGGCAGGCTAGAGTCTCGCTCGTTATCGGAATAAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCGAGAAAGAGCTTTCAATCTGTCAGTCCTAATGGTGTCCGGACCGGGTGAGTTTTCCCGTGTTGAGTCAAATTAAGCCGCAAGCTCCACGCCTTGTGGTGCCCTTCCGTTAATTTCTTTAAGTTTCAGCTTTGCAACCATACTACCCCCGGAACCGAAAGACTTTCGTTTCCGGATAGCTCCTCGGCAGGGCAAAAACCCTCCGAATCGCGAGATGGCATCGTTTACGGTCAGAACTAGGGCGGTATAACATCTGTGATAGGTTCCGCTTTTATGATTTTAAGCACGTCGGAGGATGGGCTTCTATTAGAGAAAATACGGTATTCGAAAACTTCCAAATGTTCAAAAATTTCAAAAAAAAATATGTTTTTCCGAATTCAGAAAAAAAACAATGAGGGTTTCTGAATTTTTGAATACTTGAGTTTTTAAGTTTCTCATATTCTGAATTTTCGAATTTTCGAATTTCTAAATATCTGAATTTCTGACATTCTGAACCAAAAAAAGATGCCAAAATTAGATTTATTAAATTATTCAATAATTATATTCCAAATTATCATCCTCCATGAATCCATCCAAATCAAATGCTCCACTGAAACGGTTTGGTCCAAATA</canonical>
            <polymorphic>TAGCTTATGAACAAAAATTTTCCAATATCTCGATCAATTTCATTTTAAAGTACTATATGTGACGAAGGTAAGTTTTAAGCTTTGTATTTATATTTTTAAAATGTATTTATATTTATTATTATATTTATTATTTATGTATTTTTATTTAATGTATTTATATTTTTAAATAAACATTGAAACGTTCAATTTCTGTGCATCAAGTGTTCTTTTTTATCACCGAATCATTACTAATAACATTCACCAGATTCCGTATGTGCGTATGTATGTCGCGTGACGGTTAACCCATTCAAAGTTAACCGATTGAGCTAACACCTGGCAGGCTAGAGTCTCGCTCGTTATCGGAATAAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCGAGAAAGAGCTTTCAATCTGTCAGTCCTAATGGTGTCCGGACCGGGTGAGTTTTCCCGTGTTGAGTCAAATTAAGCCGCAAGCTCCACGCCTTGTGGTGCCCTTCCGTYAATTTCTTTAAGTTTCAGCTTTGCAACCATACTACCCCCGGAACCGAAAGACTTTCGTTTCCGGATAGCTCCTCGGCAGGGCAAAAACCCTCCGAATCGCGAGATGGCATCGTTTACGGTCAGAACTAGGGCGGTATAACATCTGTGATAGGTTCCGCTTTTATGATTTTAAGCACGTCGGAGGATGGGCTTCTATTAGAGAAAATACGGTATTCGAAAACTTCCAAATGTTCAAAAATTTCAAAAAAAAATATGTTTTTCCGAATTCAGAAAAAAAACAATGAGGGTTTCTGAATTTTTGAATACTTGAGTTTTTAAGTTTCTCATATTCTGAATTTTCGAATTTTCGAATTTCTAAATATCTGAATTTCTGACATTCTGAACCAAAAAAAGATGCCAAAATTAGATTTATTAAATTATTCAATAATTATATTCCAAATTATCATCCTCCATGAATCCATCCAAATCAAATGCTCCACTGAAACGGTTTGGTCCAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>169 161 146 115 97 88 50 45 37 30 21 17 15 9</canonical_bands>
                <polymorphic_bands>169 161 146 115 97 88 50 46 45 30 21 17 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCGGAATAAACCAGACAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTATCCGGAAACGAAAGTCT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>TATCGGAATAAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCGAGAAAGAGCTTTCAATCTGTCAGTCCTAATGGTGTCCGGACCGGGTGAGTTTTCCCGTGTTGAGTCAAATTAAGCCGCAAGCTCCACGCCTTGTGGTGCCCTTCCGTTAATTTCTTTAAGTTTCAGCTTTGCAACCATACTACCCCCGGAACCGAAAGACTTTCGTTTCCGGATAG</canonical_amplicon>
		<polymorphic_amplicon>TATCGGAATAAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCGAGAAAGAGCTTTCAATCTGTCAGTCCTAATGGTGTCCGGACCGGGTGAGTTTTCCCGTGTTGAGTCAAATTAAGCCGCAAGCTCCACGCCTTGTGGTGCCCTTCCGTYAATTTCTTTAAGTTTCAGCTTTGCAACCATACTACCCCCGGAACCGAAAGACTTTCGTTTCCGGATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34491</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>65127</contig_pos>
        <strand>+</strand>
        <context>AATCGTGGCR[A/G]TCAAATTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCA</left_flank>
        <right_flank>TCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGATTTTGGACCATTTTTGACCAATTTTGGATCATTTTTGACAGATTTTGGACCATTTTTGGCTGATTTCGGACCATTTTTGACAGATTTTGGACCATTTTTGGCTGATTTCGGACCATTTTTGACTGATTTCGGACCATTTTCAGATTATTCCTAAAACTGCGCGGTGTCAAATGCGCAAGCTCCATTATGGCCTATGTGATATGGAAGGTGGTCCAGGAGGTCGTCATGGTTCCAGCTCTCGTCATTTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCCAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCATTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATTTTCACTCTAATTTAGGCCATTTTAGGCTACTGTCAGGCTAATAAATTTGGACCGATTTAGGCCAGAATGGTACTGTTCAAGGCCGATTTTCCATCATTTTGGGCCACATTTAGTCCATTTTCAGGCTATTCTAAGCCTATTTTGGACCACTCTGGA</canonical>
            <polymorphic>CAGATTTTGGACCATTTTTGACCAATTTTGGATCATTTTTGACAGATTTTGGACCATTTTTGGCTGATTTCGGACCATTTTTGACAGATTTTGGACCATTTTTGGCTGATTTCGGACCATTTTTGACTGATTTCGGACCATTTTCAGATTATTCCTAAAACTGCGCGGTGTCAAATGCGCAAGCTCCATTATGGCCTATGTGATATGGAAGGTGGTCCAGGAGGTCGTCATGGTTCCAGCTCTCGTCATTTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCCAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCARTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATTTTCACTCTAATTTAGGCCATTTTAGGCTACTGTCAGGCTAATAAATTTGGACCGATTTAGGCCAGAATGGTACTGTTCAAGGCCGATTTTCCATCATTTTGGGCCACATTTAGTCCATTTTCAGGCTATTCTAAGCCTATTTTGGACCACTCTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAATTTGAGACTTCTAGACC</pcr_primer_p1>
		<pcr_primer_p2>CTACTCACCCAAAAACAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>211</pcr_amplicon_size>
		<canonical_amplicon>CCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCATTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAG</canonical_amplicon>
		<polymorphic_amplicon>CCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCARTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34492</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>65227</contig_pos>
        <strand>+</strand>
        <context>AGGCTTTTCA[A/G]KGCTGAAAWT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCA</left_flank>
        <right_flank>GGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGCTGATTTCGGACCATTTTTGACTGATTTCGGACCATTTTCAGATTATTCCTAAAACTGCGCGGTGTCAAATGCGCAAGCTCCATTATGGCCTATGTGATATGGAAGGTGGTCCAGGAGGTCGTCATGGTTCCAGCTCTCGTCATTTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCCAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCATTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATTTTCACTCTAATTTAGGCCATTTTAGGCTACTGTCAGGCTAATAAATTTGGACCGATTTAGGCCAGAATGGTACTGTTCAAGGCCGATTTTCCATCATTTTGGGCCACATTTAGTCCATTTTCAGGCTATTCTAAGCCTATTTTGGACCACTCTGGACCGAAATTTTGAGCCAAAATTTGTCCAGATTTGGGCCATATTTAGGCTATTTTAAGCCAAATTTAGACCGTTTTAAGCTCATCTAGGGTCATTTTCAGCC</canonical>
            <polymorphic>TTTGGCTGATTTCGGACCATTTTTGACTGATTTCGGACCATTTTCAGATTATTCCTAAAACTGCGCGGTGTCAAATGCGCAAGCTCCATTATGGCCTATGTGATATGGAAGGTGGTCCAGGAGGTCGTCATGGTTCCAGCTCTCGTCATTTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCCAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCATTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCARGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATTTTCACTCTAATTTAGGCCATTTTAGGCTACTGTCAGGCTAATAAATTTGGACCGATTTAGGCCAGAATGGTACTGTTCAAGGCCGATTTTCCATCATTTTGGGCCACATTTAGTCCATTTTCAGGCTATTCTAAGCCTATTTTGGACCACTCTGGACCGAAATTTTGAGCCAAAATTTGTCCAGATTTGGGCCATATTTAGGCTATTTTAAGCCAAATTTAGACCGTTTTAAGCTCATCTAGGGTCATTTTCAGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCTGTTTTTGGGTGAGTAG</pcr_primer_p1>
		<pcr_primer_p2>CTTATCAGTGCCATTTGATTG</pcr_primer_p2>
		<pcr_amplicon_size>688</pcr_amplicon_size>
		<canonical_amplicon>ATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTG</canonical_amplicon>
		<polymorphic_amplicon>ATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCARGGCTGAAAATAGATCTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34493</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>65228</contig_pos>
        <strand>+</strand>
        <context>GGCTTTTCAR[G/T]GCTGAAAWTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAG</left_flank>
        <right_flank>GCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGCTGATTTCGGACCATTTTTGACTGATTTCGGACCATTTTCAGATTATTCCTAAAACTGCGCGGTGTCAAATGCGCAAGCTCCATTATGGCCTATGTGATATGGAAGGTGGTCCAGGAGGTCGTCATGGTTCCAGCTCTCGTCATTTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCCAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCATTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATTTTCACTCTAATTTAGGCCATTTTAGGCTACTGTCAGGCTAATAAATTTGGACCGATTTAGGCCAGAATGGTACTGTTCAAGGCCGATTTTCCATCATTTTGGGCCACATTTAGTCCATTTTCAGGCTATTCTAAGCCTATTTTGGACCACTCTGGACCGAAATTTTGAGCCAAAATTTGTCCAGATTTGGGCCATATTTAGGCTATTTTAAGCCAAATTTAGACCGTTTTAAGCTCATCTAGGGTCATTTTCAGCCA</canonical>
            <polymorphic>TTGGCTGATTTCGGACCATTTTTGACTGATTTCGGACCATTTTCAGATTATTCCTAAAACTGCGCGGTGTCAAATGCGCAAGCTCCATTATGGCCTATGTGATATGGAAGGTGGTCCAGGAGGTCGTCATGGTTCCAGCTCTCGTCATTTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCCAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCATTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGKGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATTTTCACTCTAATTTAGGCCATTTTAGGCTACTGTCAGGCTAATAAATTTGGACCGATTTAGGCCAGAATGGTACTGTTCAAGGCCGATTTTCCATCATTTTGGGCCACATTTAGTCCATTTTCAGGCTATTCTAAGCCTATTTTGGACCACTCTGGACCGAAATTTTGAGCCAAAATTTGTCCAGATTTGGGCCATATTTAGGCTATTTTAAGCCAAATTTAGACCGTTTTAAGCTCATCTAGGGTCATTTTCAGCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>131 98 87 78 65 45 34 32 32 32 24 22 22 22 22 21 21 21 21 16 12 11 11 11 11 11 11 10 10 10 10 10 10 9 4 3</canonical_bands>
                <polymorphic_bands>131 98 87 78 65 45 42 34 32 32 24 22 22 22 22 21 21 21 21 16 12 11 11 11 11 11 11 10 10 10 10 10 9 4 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCTGTTTTTGGGTGAGTAG</pcr_primer_p1>
		<pcr_primer_p2>CTTATCAGTGCCATTTGATTG</pcr_primer_p2>
		<pcr_amplicon_size>688</pcr_amplicon_size>
		<canonical_amplicon>ATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGG</canonical_amplicon>
		<polymorphic_amplicon>ATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGKGCTGAAAATAGATCTTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34494</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>65236</contig_pos>
        <strand>+</strand>
        <context>ARKGCTGAAA[A/T]TAGATCTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAA</left_flank>
        <right_flank>TAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGGACCATTTTTGACTGATTTCGGACCATTTTCAGATTATTCCTAAAACTGCGCGGTGTCAAATGCGCAAGCTCCATTATGGCCTATGTGATATGGAAGGTGGTCCAGGAGGTCGTCATGGTTCCAGCTCTCGTCATTTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCCAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCATTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATTTTCACTCTAATTTAGGCCATTTTAGGCTACTGTCAGGCTAATAAATTTGGACCGATTTAGGCCAGAATGGTACTGTTCAAGGCCGATTTTCCATCATTTTGGGCCACATTTAGTCCATTTTCAGGCTATTCTAAGCCTATTTTGGACCACTCTGGACCGAAATTTTGAGCCAAAATTTGTCCAGATTTGGGCCATATTTAGGCTATTTTAAGCCAAATTTAGACCGTTTTAAGCTCATCTAGGGTCATTTTCAGCCAATTTTCTC</canonical>
            <polymorphic>TTTCGGACCATTTTTGACTGATTTCGGACCATTTTCAGATTATTCCTAAAACTGCGCGGTGTCAAATGCGCAAGCTCCATTATGGCCTATGTGATATGGAAGGTGGTCCAGGAGGTCGTCATGGTTCCAGCTCTCGTCATTTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCCAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCATTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAWTAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATTTTCACTCTAATTTAGGCCATTTTAGGCTACTGTCAGGCTAATAAATTTGGACCGATTTAGGCCAGAATGGTACTGTTCAAGGCCGATTTTCCATCATTTTGGGCCACATTTAGTCCATTTTCAGGCTATTCTAAGCCTATTTTGGACCACTCTGGACCGAAATTTTGAGCCAAAATTTGTCCAGATTTGGGCCATATTTAGGCTATTTTAAGCCAAATTTAGACCGTTTTAAGCTCATCTAGGGTCATTTTCAGCCAATTTTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCTGTTTTTGGGTGAGTAG</pcr_primer_p1>
		<pcr_primer_p2>CTTATCAGTGCCATTTGATTG</pcr_primer_p2>
		<pcr_amplicon_size>688</pcr_amplicon_size>
		<canonical_amplicon>ATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAA</canonical_amplicon>
		<polymorphic_amplicon>ATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAWTAGATCTTTTGGGACTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34495</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>65254</contig_pos>
        <strand>+</strand>
        <context>TTTGGGACTT[A/T]AATTKGGCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTT</left_flank>
        <right_flank>AATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATTTCGGACCATTTTCAGATTATTCCTAAAACTGCGCGGTGTCAAATGCGCAAGCTCCATTATGGCCTATGTGATATGGAAGGTGGTCCAGGAGGTCGTCATGGTTCCAGCTCTCGTCATTTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCCAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCATTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATTTTCACTCTAATTTAGGCCATTTTAGGCTACTGTCAGGCTAATAAATTTGGACCGATTTAGGCCAGAATGGTACTGTTCAAGGCCGATTTTCCATCATTTTGGGCCACATTTAGTCCATTTTCAGGCTATTCTAAGCCTATTTTGGACCACTCTGGACCGAAATTTTGAGCCAAAATTTGTCCAGATTTGGGCCATATTTAGGCTATTTTAAGCCAAATTTAGACCGTTTTAAGCTCATCTAGGGTCATTTTCAGCCAATTTTCTCGATTTTTAGCTTAAAATT</canonical>
            <polymorphic>TGATTTCGGACCATTTTCAGATTATTCCTAAAACTGCGCGGTGTCAAATGCGCAAGCTCCATTATGGCCTATGTGATATGGAAGGTGGTCCAGGAGGTCGTCATGGTTCCAGCTCTCGTCATTTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCCAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCATTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTWAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATTTTCACTCTAATTTAGGCCATTTTAGGCTACTGTCAGGCTAATAAATTTGGACCGATTTAGGCCAGAATGGTACTGTTCAAGGCCGATTTTCCATCATTTTGGGCCACATTTAGTCCATTTTCAGGCTATTCTAAGCCTATTTTGGACCACTCTGGACCGAAATTTTGAGCCAAAATTTGTCCAGATTTGGGCCATATTTAGGCTATTTTAAGCCAAATTTAGACCGTTTTAAGCTCATCTAGGGTCATTTTCAGCCAATTTTCTCGATTTTTAGCTTAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>499 228 185 47 21 13 7</canonical_bands>
                <polymorphic_bands>512 228 185 47 21 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCTGTTTTTGGGTGAGTAG</pcr_primer_p1>
		<pcr_primer_p2>CTTATCAGTGCCATTTGATTG</pcr_primer_p2>
		<pcr_amplicon_size>688</pcr_amplicon_size>
		<canonical_amplicon>ATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACC</canonical_amplicon>
		<polymorphic_amplicon>ATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTWAATTGGGCCTTTTAAAGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34496</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>65259</contig_pos>
        <strand>+</strand>
        <context>GACTTWAATT[G/T]GGCCTTTTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATT</left_flank>
        <right_flank>GGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGGACCATTTTCAGATTATTCCTAAAACTGCGCGGTGTCAAATGCGCAAGCTCCATTATGGCCTATGTGATATGGAAGGTGGTCCAGGAGGTCGTCATGGTTCCAGCTCTCGTCATTTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCCAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCATTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATTTTCACTCTAATTTAGGCCATTTTAGGCTACTGTCAGGCTAATAAATTTGGACCGATTTAGGCCAGAATGGTACTGTTCAAGGCCGATTTTCCATCATTTTGGGCCACATTTAGTCCATTTTCAGGCTATTCTAAGCCTATTTTGGACCACTCTGGACCGAAATTTTGAGCCAAAATTTGTCCAGATTTGGGCCATATTTAGGCTATTTTAAGCCAAATTTAGACCGTTTTAAGCTCATCTAGGGTCATTTTCAGCCAATTTTCTCGATTTTTAGCTTAAAATTCCGCA</canonical>
            <polymorphic>TCGGACCATTTTCAGATTATTCCTAAAACTGCGCGGTGTCAAATGCGCAAGCTCCATTATGGCCTATGTGATATGGAAGGTGGTCCAGGAGGTCGTCATGGTTCCAGCTCTCGTCATTTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCCAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCATTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTKGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATTTTCACTCTAATTTAGGCCATTTTAGGCTACTGTCAGGCTAATAAATTTGGACCGATTTAGGCCAGAATGGTACTGTTCAAGGCCGATTTTCCATCATTTTGGGCCACATTTAGTCCATTTTCAGGCTATTCTAAGCCTATTTTGGACCACTCTGGACCGAAATTTTGAGCCAAAATTTGTCCAGATTTGGGCCATATTTAGGCTATTTTAAGCCAAATTTAGACCGTTTTAAGCTCATCTAGGGTCATTTTCAGCCAATTTTCTCGATTTTTAGCTTAAAATTCCGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>418 99 97 87 79 77 52 43 35 10 3</canonical_bands>
                <polymorphic_bands>505 99 97 79 77 52 43 35 10 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCTGTTTTTGGGTGAGTAG</pcr_primer_p1>
		<pcr_primer_p2>CTTATCAGTGCCATTTGATTG</pcr_primer_p2>
		<pcr_amplicon_size>688</pcr_amplicon_size>
		<canonical_amplicon>ATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTKGGCCTTTTAAAGACCGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34497</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>65348</contig_pos>
        <strand></strand>
        <context>tcattttagg[C/A]ccatttcawg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGG</left_flank>
        <right_flank>CCATTTCATGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTA</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGTCGTCATGGTTCCAGCTCTCGTCATTTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCCAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCATTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATTTTCACTCTAATTTAGGCCATTTTAGGCTACTGTCAGGCTAATAAATTTGGACCGATTTAGGCCAGAATGGTACTGTTCAAGGCCGATTTTCCATCATTTTGGGCCACATTTAGTCCATTTTCAGGCTATTCTAAGCCTATTTTGGACCACTCTGGACCGAAATTTTGAGCCAAAATTTGTCCAGATTTGGGCCATATTTAGGCTATTTTAAGCCAAATTTAGACCGTTTTAAGCTCATCTAGGGTCATTTTCAGCCAATTTTCTCGATTTTTAGCTTAAAATTCCGCATTTTCAGCCGATTTTCAGCCAAAACCCCCCTAATTTTCAGGCTGGCTCGCCAGGTCCCTCTGGCAACTCCAAACCGCCCATACCCAATC</canonical>
            <polymorphic>AGGTCGTCATGGTTCCAGCTCTCGTCATTTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCCAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCATTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGMCCATTTCATGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATTTTCACTCTAATTTAGGCCATTTTAGGCTACTGTCAGGCTAATAAATTTGGACCGATTTAGGCCAGAATGGTACTGTTCAAGGCCGATTTTCCATCATTTTGGGCCACATTTAGTCCATTTTCAGGCTATTCTAAGCCTATTTTGGACCACTCTGGACCGAAATTTTGAGCCAAAATTTGTCCAGATTTGGGCCATATTTAGGCTATTTTAAGCCAAATTTAGACCGTTTTAAGCTCATCTAGGGTCATTTTCAGCCAATTTTCTCGATTTTTAGCTTAAAATTCCGCATTTTCAGCCGATTTTCAGCCAAAACCCCCCTAATTTTCAGGCTGGCTCGCCAGGTCCCTCTGGCAACTCCAAACCGCCCATACCCAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>350 186 88 76 65 54 45 42 22 21 21 21 9</canonical_bands>
                <polymorphic_bands>350 186 88 76 65 54 45 43 42 21 21 9</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>131 98 87 65 44 34 32 32 32 24 23 22 22 22 22 21 21 21 21 21 20 18 16 12 11 11 11 11 11 11 10 10 10 10 10 10 9 4</canonical_bands>
                <polymorphic_bands>131 98 87 65 44 34 33 32 32 32 24 23 22 22 22 21 21 21 21 21 20 18 16 12 11 11 11 11 11 10 10 10 10 10 10 9 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCTGTTTTTGGGTGAGTAG</pcr_primer_p1>
		<pcr_primer_p2>CTTATCAGTGCCATTTGATTG</pcr_primer_p2>
		<pcr_amplicon_size>688</pcr_amplicon_size>
		<canonical_amplicon>ATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAG</canonical_amplicon>
		<polymorphic_amplicon>ATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGMCCATTTCATGCTCATTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34498</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>65357</contig_pos>
        <strand></strand>
        <context>gmccatttca[T/A]gctcatttca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCA</left_flank>
        <right_flank>GCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTTCCAGCTCTCGTCATTTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCCAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCATTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATTTTCACTCTAATTTAGGCCATTTTAGGCTACTGTCAGGCTAATAAATTTGGACCGATTTAGGCCAGAATGGTACTGTTCAAGGCCGATTTTCCATCATTTTGGGCCACATTTAGTCCATTTTCAGGCTATTCTAAGCCTATTTTGGACCACTCTGGACCGAAATTTTGAGCCAAAATTTGTCCAGATTTGGGCCATATTTAGGCTATTTTAAGCCAAATTTAGACCGTTTTAAGCTCATCTAGGGTCATTTTCAGCCAATTTTCTCGATTTTTAGCTTAAAATTCCGCATTTTCAGCCGATTTTCAGCCAAAACCCCCCTAATTTTCAGGCTGGCTCGCCAGGTCCCTCTGGCAACTCCAAACCGCCCATACCCAATCAAATGGCAC</canonical>
            <polymorphic>TGGTTCCAGCTCTCGTCATTTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCCAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCATTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCAWGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATTTTCACTCTAATTTAGGCCATTTTAGGCTACTGTCAGGCTAATAAATTTGGACCGATTTAGGCCAGAATGGTACTGTTCAAGGCCGATTTTCCATCATTTTGGGCCACATTTAGTCCATTTTCAGGCTATTCTAAGCCTATTTTGGACCACTCTGGACCGAAATTTTGAGCCAAAATTTGTCCAGATTTGGGCCATATTTAGGCTATTTTAAGCCAAATTTAGACCGTTTTAAGCTCATCTAGGGTCATTTTCAGCCAATTTTCTCGATTTTTAGCTTAAAATTCCGCATTTTCAGCCGATTTTCAGCCAAAACCCCCCTAATTTTCAGGCTGGCTCGCCAGGTCCCTCTGGCAACTCCAAACCGCCCATACCCAATCAAATGGCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCTGTTTTTGGGTGAGTAG</pcr_primer_p1>
		<pcr_primer_p2>CTTATCAGTGCCATTTGATTG</pcr_primer_p2>
		<pcr_amplicon_size>688</pcr_amplicon_size>
		<canonical_amplicon>ATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTCA</canonical_amplicon>
		<polymorphic_amplicon>ATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCAWGCTCATTTCAGGCCGCTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34499</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>65376</contig_pos>
        <strand></strand>
        <context>caggccgctt[C/T]agtccgtttc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTT</left_flank>
        <right_flank>AGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCCAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCATTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATTTTCACTCTAATTTAGGCCATTTTAGGCTACTGTCAGGCTAATAAATTTGGACCGATTTAGGCCAGAATGGTACTGTTCAAGGCCGATTTTCCATCATTTTGGGCCACATTTAGTCCATTTTCAGGCTATTCTAAGCCTATTTTGGACCACTCTGGACCGAAATTTTGAGCCAAAATTTGTCCAGATTTGGGCCATATTTAGGCTATTTTAAGCCAAATTTAGACCGTTTTAAGCTCATCTAGGGTCATTTTCAGCCAATTTTCTCGATTTTTAGCTTAAAATTCCGCATTTTCAGCCGATTTTCAGCCAAAACCCCCCTAATTTTCAGGCTGGCTCGCCAGGTCCCTCTGGCAACTCCAAACCGCCCATACCCAATCAAATGGCACTGATAAGAACGAGTCAACG</canonical>
            <polymorphic>TTTCAGCTTTATTTGTGTAGATGTGAGTCTTTTTCAGTCAAAAATTCAAATTTTCAGAATTTTCAAAAAATTCAAATTTTCAGAAATTTTCAGCCAAAAGTCGCAAAATCCCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCATTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTYAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATTTTCACTCTAATTTAGGCCATTTTAGGCTACTGTCAGGCTAATAAATTTGGACCGATTTAGGCCAGAATGGTACTGTTCAAGGCCGATTTTCCATCATTTTGGGCCACATTTAGTCCATTTTCAGGCTATTCTAAGCCTATTTTGGACCACTCTGGACCGAAATTTTGAGCCAAAATTTGTCCAGATTTGGGCCATATTTAGGCTATTTTAAGCCAAATTTAGACCGTTTTAAGCTCATCTAGGGTCATTTTCAGCCAATTTTCTCGATTTTTAGCTTAAAATTCCGCATTTTCAGCCGATTTTCAGCCAAAACCCCCCTAATTTTCAGGCTGGCTCGCCAGGTCCCTCTGGCAACTCCAAACCGCCCATACCCAATCAAATGGCACTGATAAGAACGAGTCAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCTGTTTTTGGGTGAGTAG</pcr_primer_p1>
		<pcr_primer_p2>CTTATCAGTGCCATTTGATTG</pcr_primer_p2>
		<pcr_amplicon_size>688</pcr_amplicon_size>
		<canonical_amplicon>ATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATTTTCACTCTAATTTAGGCCATTTTAGGCTACTGTCAGGCTAATAAATTTGGACCGATTTAGGCCAGAATGGTACTGTTCAAGGCCGATTTTCCATCATTTTGGGCCACATTTAGTCCATTTTCAGGCTATTCTAAGCCTATTTTGGACCACTCTGGACCGAAATTTTGAGCCAAAATTTGTCCAGATTTGGGCCATATTTAGGCTATTTTAAGCCAAATTTAGACCGTTTTAAGCTCATCTAGGGTCATTTTCAGCCAATTTTCTCGATTTTTAGCTTAAAATTCCGCATTTTCAGCCGATTTTCAGCCAAAACCCCCCTAATTTTCAGGCTGGCTCGCCAGGTCCCTCTGGCAACTCCAAACCGCCCATACCCAATCAAATGGCACTGATAAG</canonical_amplicon>
		<polymorphic_amplicon>ATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTYAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATTTTCACTCTAATTTAGGCCATTTTAGGCTACTGTCAGGCTAATAAATTTGGACCGATTTAGGCCAGAATGGTACTGTTCAAGGCCGATTTTCCATCATTTTGGGCCACATTTAGTCCATTTTCAGGCTATTCTAAGCCTATTTTGGACCACTCTGGACCGAAATTTTGAGCCAAAATTTGTCCAGATTTGGGCCATATTTAGGCTATTTTAAGCCAAATTTAGACCGTTTTAAGCTCATCTAGGGTCATTTTCAGCCAATTTTCTCGATTTTTAGCTTAAAATTCCGCATTTTCAGCCGATTTTCAGCCAAAACCCCCCTAATTTTCAGGCTGGCTCGCCAGGTCCCTCTGGCAACTCCAAACCGCCCATACCCAATCAAATGGCACTGATAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34500</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>65486</contig_pos>
        <strand></strand>
        <context>ctctaattta[G/T]gccattttag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATTTTCACTCTAATTTA</left_flank>
        <right_flank>GCCATTTTAGGCTACTGTCAGGCTAATAAATTTGGACCGATTTAGGCCAG</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCATTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATTTTCACTCTAATTTAGGCCATTTTAGGCTACTGTCAGGCTAATAAATTTGGACCGATTTAGGCCAGAATGGTACTGTTCAAGGCCGATTTTCCATCATTTTGGGCCACATTTAGTCCATTTTCAGGCTATTCTAAGCCTATTTTGGACCACTCTGGACCGAAATTTTGAGCCAAAATTTGTCCAGATTTGGGCCATATTTAGGCTATTTTAAGCCAAATTTAGACCGTTTTAAGCTCATCTAGGGTCATTTTCAGCCAATTTTCTCGATTTTTAGCTTAAAATTCCGCATTTTCAGCCGATTTTCAGCCAAAACCCCCCTAATTTTCAGGCTGGCTCGCCAGGTCCCTCTGGCAACTCCAAACCGCCCATACCCAATCAAATGGCACTGATAAGAACGAGTCAACGACACAAATCTCGTTTATCGATGCGTTTCATTCGGAAGCCAACGATCATCAGGAGCTACTACAAACTACAATTAGACTACAAACTACAAACAACGAGTCGGTGGAGCTGAT</canonical>
            <polymorphic>CCAAATTTGAGACTTCTAGACCAAAAAATCCGCCTAAATTCGAAATTTAGGGTCTGGAAACCCCAAAAATCAGATTTTCAGCCAAAATCCGCCATTTTTTCAGCGATATCTCAAAAGTTGGGAAAATGTGAATCGTGGCATTCAAATTTTGCTCGTCGTCTGGACATATGCATTCTATTCGTTGGCGTTGATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATTTTCACTCTAATTTAKGCCATTTTAGGCTACTGTCAGGCTAATAAATTTGGACCGATTTAGGCCAGAATGGTACTGTTCAAGGCCGATTTTCCATCATTTTGGGCCACATTTAGTCCATTTTCAGGCTATTCTAAGCCTATTTTGGACCACTCTGGACCGAAATTTTGAGCCAAAATTTGTCCAGATTTGGGCCATATTTAGGCTATTTTAAGCCAAATTTAGACCGTTTTAAGCTCATCTAGGGTCATTTTCAGCCAATTTTCTCGATTTTTAGCTTAAAATTCCGCATTTTCAGCCGATTTTCAGCCAAAACCCCCCTAATTTTCAGGCTGGCTCGCCAGGTCCCTCTGGCAACTCCAAACCGCCCATACCCAATCAAATGGCACTGATAAGAACGAGTCAACGACACAAATCTCGTTTATCGATGCGTTTCATTCGGAAGCCAACGATCATCAGGAGCTACTACAAACTACAATTAGACTACAAACTACAAACAACGAGTCGGTGGAGCTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>324 212 88 76 65 54 45 42 22 21 21 21 9</canonical_bands>
                <polymorphic_bands>324 212 88 87 76 65 54 22 21 21 21 9</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>131 109 81 65 51 34 32 32 32 24 23 22 22 22 22 21 21 21 21 21 20 17 12 11 11 11 11 11 11 10 10 10 10 10 10 9 5 4</canonical_bands>
                <polymorphic_bands>131 109 81 65 51 42 34 32 32 24 23 22 22 22 22 21 21 21 21 21 20 17 12 11 11 11 11 11 11 10 10 10 10 10 9 5 4</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>454 212 161 119 45 9</canonical_bands>
                <polymorphic_bands>454 212 206 119 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCTGTTTTTGGGTGAGTAG</pcr_primer_p1>
		<pcr_primer_p2>CTTATCAGTGCCATTTGATTG</pcr_primer_p2>
		<pcr_amplicon_size>688</pcr_amplicon_size>
		<canonical_amplicon>ATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATTTTCACTCTAATTTAGGCCATTTTAGGCTACTGTCAGGCTAATAAATTTGGACCGATTTAGGCCAGAATGGTACTGTTCAAGGCCGATTTTCCATCATTTTGGGCCACATTTAGTCCATTTTCAGGCTATTCTAAGCCTATTTTGGACCACTCTGGACCGAAATTTTGAGCCAAAATTTGTCCAGATTTGGGCCATATTTAGGCTATTTTAAGCCAAATTTAGACCGTTTTAAGCTCATCTAGGGTCATTTTCAGCCAATTTTCTCGATTTTTAGCTTAAAATTCCGCATTTTCAGCCGATTTTCAGCCAAAACCCCCCTAATTTTCAGGCTGGCTCGCCAGGTCCCTCTGGCAACTCCAAACCGCCCATACCCAATCAAATGGCACTGATAAG</canonical_amplicon>
		<polymorphic_amplicon>ATCCTGTTTTTGGGTGAGTAGGCCTTTTAGGCCAAAAATTAGGCTTTTCAGGGCTGAAAATAGATCTTTTGGGACTTTAATTGGGCCTTTTAAAGACCGAAATTCGGCTTTTTTGGAGCCAAAATTAGGTCATTTTAGACCAAATTTAGGCCAGTCTAGGCTCATTTTAGGCCCATTTCATGCTCATTTCAGGCCGCTTCAGTCCGTTTCAGACATTTTTTAGACCACAAAATTTGGTCAATTTCGGTCTAGTTCGGGCTCATTTTGGGCCGTTTTAAGCCTATTTCAGGCAATTTTCACTCTAATTTAKGCCATTTTAGGCTACTGTCAGGCTAATAAATTTGGACCGATTTAGGCCAGAATGGTACTGTTCAAGGCCGATTTTCCATCATTTTGGGCCACATTTAGTCCATTTTCAGGCTATTCTAAGCCTATTTTGGACCACTCTGGACCGAAATTTTGAGCCAAAATTTGTCCAGATTTGGGCCATATTTAGGCTATTTTAAGCCAAATTTAGACCGTTTTAAGCTCATCTAGGGTCATTTTCAGCCAATTTTCTCGATTTTTAGCTTAAAATTCCGCATTTTCAGCCGATTTTCAGCCAAAACCCCCCTAATTTTCAGGCTGGCTCGCCAGGTCCCTCTGGCAACTCCAAACCGCCCATACCCAATCAAATGGCACTGATAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34501</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>67482</contig_pos>
        <strand>+</strand>
        <context>TTTTAGATGG[C/G]GGTACTGTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCACGTGGATCACACCGAAGAGGGCGACGACCTGGAAGTATTTTAGATGG</left_flank>
        <right_flank>GGTACTGTAGTTTTTTTCAGGAGTACTGTATCTATCTATCTAGAGATGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCGGATCCTCTTCTCCACTCGCTGCTCCACCCCTTACAATTGCATTCGCATCATCCAGGGACCCCAGGAACGCCGAAGACACTCCAAGCCGAGCGATCTCCCCCTCGATGAGCCTCAAAAACTCCCTGGCTCTCGTCAAAAATGGAATCTGCTCTCCAGAAGAGCCCACCAACGCCGTCGGGGTCGATGGAGCCGTCGTCCCAATGCCAGATGACGTCGCCTTTTGCTCCTCCCACTTTTTGAGGGTCGCATCGAAGACGGGGTTTCTGGCGAGCATCTGAGCTCGATTTTTGTGCACAATTTGCATGATTCCGGGTGGCTGGAGCCACGGTTCACCGTCCACTTGAACCGGGATGGGCTCGTCGCCAAGGATTACGATACGCACGTGCCGACACTGAGCAATACGGTGGTTTTGGAGACGGTAGGCGTTTGGGACACGAGACGTCGCCACGTGGATCACACCGAAGAGGGCGACGACCTGGAAGTATTTTAGATGGGGGTACTGTAGTTTTTTTCAGGAGTACTGTATCTATCTATCTAGAGATGCAGGCAAGTTAGATGTGCAGGTAGCGCTACCAGGAGTACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACTAGTCAGATGTGCAGATAGGGGGTACTGTACCTGCACATCTAACTATTTTAAAGCCATTTAGAAAGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTAGCAAAATTTGGAAAATCCGAAAATTCCAAAAGTTCGAAAATCCAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCAAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGACCTAGAA</canonical>
            <polymorphic>CTCCGGATCCTCTTCTCCACTCGCTGCTCCACCCCTTACAATTGCATTCGCATCATCCAGGGACCCCAGGAACGCCGAAGACACTCCAAGCCGAGCGATCTCCCCCTCGATGAGCCTCAAAAACTCCCTGGCTCTCGTCAAAAATGGAATCTGCTCTCCAGAAGAGCCCACCAACGCCGTCGGGGTCGATGGAGCCGTCGTCCCAATGCCAGATGACGTCGCCTTTTGCTCCTCCCACTTTTTGAGGGTCGCATCGAAGACGGGGTTTCTGGCGAGCATCTGAGCTCGATTTTTGTGCACAATTTGCATGATTCCGGGTGGCTGGAGCCACGGTTCACCGTCCACTTGAACCGGGATGGGCTCGTCGCCAAGGATTACGATACGCACGTGCCGACACTGAGCAATACGGTGGTTTTGGAGACGGTAGGCGTTTGGGACACGAGACGTCGCCACGTGGATCACACCGAAGAGGGCGACGACCTGGAAGTATTTTAGATGGSGGTACTGTAGTTTTTTTCAGGAGTACTGTATCTATCTATCTAGAGATGCAGGCAAGTTAGATGTGCAGGTAGCGCTACCAGGAGTACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACTAGTCAGATGTGCAGATAGGGGGTACTGTACCTGCACATCTAACTATTTTAAAGCCATTTAGAAAGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTAGCAAAATTTGGAAAATCCGAAAATTCCAAAAGTTCGAAAATCCAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCAAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGACCTAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTGAGCTCGATTTTTGTG</pcr_primer_p1>
		<pcr_primer_p2>GCTACCTGCACATCTAACTTG</pcr_primer_p2>
		<pcr_amplicon_size>296</pcr_amplicon_size>
		<canonical_amplicon>ATCTGAGCTCGATTTTTGTGCACAATTTGCATGATTCCGGGTGGCTGGAGCCACGGTTCACCGTCCACTTGAACCGGGATGGGCTCGTCGCCAAGGATTACGATACGCACGTGCCGACACTGAGCAATACGGTGGTTTTGGAGACGGTAGGCGTTTGGGACACGAGACGTCGCCACGTGGATCACACCGAAGAGGGCGACGACCTGGAAGTATTTTAGATGGGGGTACTGTAGTTTTTTTCAGGAGTACTGTATCTATCTATCTAGAGATGCAGGCAAGTTAGATGTGCAGGTAGC</canonical_amplicon>
		<polymorphic_amplicon>ATCTGAGCTCGATTTTTGTGCACAATTTGCATGATTCCGGGTGGCTGGAGCCACGGTTCACCGTCCACTTGAACCGGGATGGGCTCGTCGCCAAGGATTACGATACGCACGTGCCGACACTGAGCAATACGGTGGTTTTGGAGACGGTAGGCGTTTGGGACACGAGACGTCGCCACGTGGATCACACCGAAGAGGGCGACGACCTGGAAGTATTTTAGATGGSGGTACTGTAGTTTTTTTCAGGAGTACTGTATCTATCTATCTAGAGATGCAGGCAAGTTAGATGTGCAGGTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34502</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>67510</contig_pos>
        <strand></strand>
        <context>CAGGAGTACT[G/C]TATCTATCTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GACCTGGAAGTATTTTAGATGGGGGTACTGTAGTTTTTTTCAGGAGTACT</left_flank>
        <right_flank>TATCTATCTATCTAGAGATGCAGGCAAGTTAGATGTGCAGGTAGCGCTAC</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCACCCCTTACAATTGCATTCGCATCATCCAGGGACCCCAGGAACGCCGAAGACACTCCAAGCCGAGCGATCTCCCCCTCGATGAGCCTCAAAAACTCCCTGGCTCTCGTCAAAAATGGAATCTGCTCTCCAGAAGAGCCCACCAACGCCGTCGGGGTCGATGGAGCCGTCGTCCCAATGCCAGATGACGTCGCCTTTTGCTCCTCCCACTTTTTGAGGGTCGCATCGAAGACGGGGTTTCTGGCGAGCATCTGAGCTCGATTTTTGTGCACAATTTGCATGATTCCGGGTGGCTGGAGCCACGGTTCACCGTCCACTTGAACCGGGATGGGCTCGTCGCCAAGGATTACGATACGCACGTGCCGACACTGAGCAATACGGTGGTTTTGGAGACGGTAGGCGTTTGGGACACGAGACGTCGCCACGTGGATCACACCGAAGAGGGCGACGACCTGGAAGTATTTTAGATGGGGGTACTGTAGTTTTTTTCAGGAGTACTGTATCTATCTATCTAGAGATGCAGGCAAGTTAGATGTGCAGGTAGCGCTACCAGGAGTACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACTAGTCAGATGTGCAGATAGGGGGTACTGTACCTGCACATCTAACTATTTTAAAGCCATTTAGAAAGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTAGCAAAATTTGGAAAATCCGAAAATTCCAAAAGTTCGAAAATCCAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCAAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGACCTAGAAAATCCAAAAATCTAGGTTACGGTACCTG</canonical>
            <polymorphic>CCACCCCTTACAATTGCATTCGCATCATCCAGGGACCCCAGGAACGCCGAAGACACTCCAAGCCGAGCGATCTCCCCCTCGATGAGCCTCAAAAACTCCCTGGCTCTCGTCAAAAATGGAATCTGCTCTCCAGAAGAGCCCACCAACGCCGTCGGGGTCGATGGAGCCGTCGTCCCAATGCCAGATGACGTCGCCTTTTGCTCCTCCCACTTTTTGAGGGTCGCATCGAAGACGGGGTTTCTGGCGAGCATCTGAGCTCGATTTTTGTGCACAATTTGCATGATTCCGGGTGGCTGGAGCCACGGTTCACCGTCCACTTGAACCGGGATGGGCTCGTCGCCAAGGATTACGATACGCACGTGCCGACACTGAGCAATACGGTGGTTTTGGAGACGGTAGGCGTTTGGGACACGAGACGTCGCCACGTGGATCACACCGAAGAGGGCGACGACCTGGAAGTATTTTAGATGGGGGTACTGTAGTTTTTTTCAGGAGTACTSTATCTATCTATCTAGAGATGCAGGCAAGTTAGATGTGCAGGTAGCGCTACCAGGAGTACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACTAGTCAGATGTGCAGATAGGGGGTACTGTACCTGCACATCTAACTATTTTAAAGCCATTTAGAAAGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTAGCAAAATTTGGAAAATCCGAAAATTCCAAAAGTTCGAAAATCCAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCAAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGACCTAGAAAATCCAAAAATCTAGGTTACGGTACCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>304 207 83 71 69 61 56 54 45 21 15 7 7</canonical_bands>
                <polymorphic_bands>304 207 83 82 71 69 56 54 45 15 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACGACCTGGAAGTATTTTAGAT</pcr_primer_p1>
		<pcr_primer_p2>AGTTTATAATGTTGAAAAGCTATGG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GACGACCTGGAAGTATTTTAGATGGGGGTACTGTAGTTTTTTTCAGGAGTACTGTATCTATCTATCTAGAGATGCAGGCAAGTTAGATGTGCAGGTAGCGCTACCAGGAGTACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACT</canonical_amplicon>
		<polymorphic_amplicon>GACGACCTGGAAGTATTTTAGATGGGGGTACTGTAGTTTTTTTCAGGAGTACTSTATCTATCTATCTAGAGATGCAGGCAAGTTAGATGTGCAGGTAGCGCTACCAGGAGTACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34503</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>67561</contig_pos>
        <strand>+</strand>
        <context>GTAGCGCTAC[C/T]AGGAGTACTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATCTATCTATCTAGAGATGCAGGCAAGTTAGATGTGCAGGTAGCGCTAC</left_flank>
        <right_flank>AGGAGTACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACACTCCAAGCCGAGCGATCTCCCCCTCGATGAGCCTCAAAAACTCCCTGGCTCTCGTCAAAAATGGAATCTGCTCTCCAGAAGAGCCCACCAACGCCGTCGGGGTCGATGGAGCCGTCGTCCCAATGCCAGATGACGTCGCCTTTTGCTCCTCCCACTTTTTGAGGGTCGCATCGAAGACGGGGTTTCTGGCGAGCATCTGAGCTCGATTTTTGTGCACAATTTGCATGATTCCGGGTGGCTGGAGCCACGGTTCACCGTCCACTTGAACCGGGATGGGCTCGTCGCCAAGGATTACGATACGCACGTGCCGACACTGAGCAATACGGTGGTTTTGGAGACGGTAGGCGTTTGGGACACGAGACGTCGCCACGTGGATCACACCGAAGAGGGCGACGACCTGGAAGTATTTTAGATGGGGGTACTGTAGTTTTTTTCAGGAGTACTGTATCTATCTATCTAGAGATGCAGGCAAGTTAGATGTGCAGGTAGCGCTACCAGGAGTACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACTAGTCAGATGTGCAGATAGGGGGTACTGTACCTGCACATCTAACTATTTTAAAGCCATTTAGAAAGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTAGCAAAATTTGGAAAATCCGAAAATTCCAAAAGTTCGAAAATCCAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCAAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGACCTAGAAAATCCAAAAATCTAGGTTACGGTACCTGCACATCAAAAAACTAACTAATGTCATTTTTAGCACACTTTTAGAGGTATTT</canonical>
            <polymorphic>GACACTCCAAGCCGAGCGATCTCCCCCTCGATGAGCCTCAAAAACTCCCTGGCTCTCGTCAAAAATGGAATCTGCTCTCCAGAAGAGCCCACCAACGCCGTCGGGGTCGATGGAGCCGTCGTCCCAATGCCAGATGACGTCGCCTTTTGCTCCTCCCACTTTTTGAGGGTCGCATCGAAGACGGGGTTTCTGGCGAGCATCTGAGCTCGATTTTTGTGCACAATTTGCATGATTCCGGGTGGCTGGAGCCACGGTTCACCGTCCACTTGAACCGGGATGGGCTCGTCGCCAAGGATTACGATACGCACGTGCCGACACTGAGCAATACGGTGGTTTTGGAGACGGTAGGCGTTTGGGACACGAGACGTCGCCACGTGGATCACACCGAAGAGGGCGACGACCTGGAAGTATTTTAGATGGGGGTACTGTAGTTTTTTTCAGGAGTACTGTATCTATCTATCTAGAGATGCAGGCAAGTTAGATGTGCAGGTAGCGCTACYAGGAGTACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACTAGTCAGATGTGCAGATAGGGGGTACTGTACCTGCACATCTAACTATTTTAAAGCCATTTAGAAAGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTAGCAAAATTTGGAAAATCCGAAAATTCCAAAAGTTCGAAAATCCAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCAAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGACCTAGAAAATCCAAAAATCTAGGTTACGGTACCTGCACATCAAAAAACTAACTAATGTCATTTTTAGCACACTTTTAGAGGTATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>500 187 129 98 49 37</canonical_bands>
                <polymorphic_bands>598 187 129 49 37</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>500 353 98 49</canonical_bands>
                <polymorphic_bands>598 353 49</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACGACCTGGAAGTATTTTAGAT</pcr_primer_p1>
		<pcr_primer_p2>AGTTTATAATGTTGAAAAGCTATGG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GACGACCTGGAAGTATTTTAGATGGGGGTACTGTAGTTTTTTTCAGGAGTACTGTATCTATCTATCTAGAGATGCAGGCAAGTTAGATGTGCAGGTAGCGCTACCAGGAGTACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACT</canonical_amplicon>
		<polymorphic_amplicon>GACGACCTGGAAGTATTTTAGATGGGGGTACTGTAGTTTTTTTCAGGAGTACTGTATCTATCTATCTAGAGATGCAGGCAAGTTAGATGTGCAGGTAGCGCTACYAGGAGTACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34504</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>67729</contig_pos>
        <strand>+</strand>
        <context>GGGTACWGTA[A/T]CTGCACATCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGCTTTTCAACATTATAAACTAGTCAGATGTGCAGATAGGGGGTACTGTA</left_flank>
        <right_flank>CTGCACATCTAACTATTTTAAAGCCATTTAGAAAGTTAGATGTGCAGGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCGCATCGAAGACGGGGTTTCTGGCGAGCATCTGAGCTCGATTTTTGTGCACAATTTGCATGATTCCGGGTGGCTGGAGCCACGGTTCACCGTCCACTTGAACCGGGATGGGCTCGTCGCCAAGGATTACGATACGCACGTGCCGACACTGAGCAATACGGTGGTTTTGGAGACGGTAGGCGTTTGGGACACGAGACGTCGCCACGTGGATCACACCGAAGAGGGCGACGACCTGGAAGTATTTTAGATGGGGGTACTGTAGTTTTTTTCAGGAGTACTGTATCTATCTATCTAGAGATGCAGGCAAGTTAGATGTGCAGGTAGCGCTACCAGGAGTACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACTAGTCAGATGTGCAGATAGGGGGTACTGTACCTGCACATCTAACTATTTTAAAGCCATTTAGAAAGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTAGCAAAATTTGGAAAATCCGAAAATTCCAAAAGTTCGAAAATCCAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCAAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGACCTAGAAAATCCAAAAATCTAGGTTACGGTACCTGCACATCAAAAAACTAACTAATGTCATTTTTAGCACACTTTTAGAGGTATTTCAGTCAGAATTTCACCAATTTCGAAAATTCGAAAAATTCATAAAATCATAATATAGGATTACTGTACCTCCAAAATGCGGTCATCAAAACTTTGGACCGTAAACTCCGGTCCCTCCTTATTCCGGCCCCAAAAGTTGGCACCGCCCGAGTACGATGGAATATTCAAGA</canonical>
            <polymorphic>GTCGCATCGAAGACGGGGTTTCTGGCGAGCATCTGAGCTCGATTTTTGTGCACAATTTGCATGATTCCGGGTGGCTGGAGCCACGGTTCACCGTCCACTTGAACCGGGATGGGCTCGTCGCCAAGGATTACGATACGCACGTGCCGACACTGAGCAATACGGTGGTTTTGGAGACGGTAGGCGTTTGGGACACGAGACGTCGCCACGTGGATCACACCGAAGAGGGCGACGACCTGGAAGTATTTTAGATGGGGGTACTGTAGTTTTTTTCAGGAGTACTGTATCTATCTATCTAGAGATGCAGGCAAGTTAGATGTGCAGGTAGCGCTACCAGGAGTACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACTAGTCAGATGTGCAGATAGGGGGTACTGTAWCTGCACATCTAACTATTTTAAAGCCATTTAGAAAGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTAGCAAAATTTGGAAAATCCGAAAATTCCAAAAGTTCGAAAATCCAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCAAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGACCTAGAAAATCCAAAAATCTAGGTTACGGTACCTGCACATCAAAAAACTAACTAATGTCATTTTTAGCACACTTTTAGAGGTATTTCAGTCAGAATTTCACCAATTTCGAAAATTCGAAAAATTCATAAAATCATAATATAGGATTACTGTACCTCCAAAATGCGGTCATCAAAACTTTGGACCGTAAACTCCGGTCCCTCCTTATTCCGGCCCCAAAAGTTGGCACCGCCCGAGTACGATGGAATATTCAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>256 207 121 85 71 61 56 49 45 21 18 5 5</canonical_bands>
                <polymorphic_bands>256 207 121 85 76 61 56 49 45 21 18 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTGTACCAACAAAGTTAGATGTG</pcr_primer_p1>
		<pcr_primer_p2>AATTTTGCTAAAGTACAGTAATCCT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACTAGTCAGATGTGCAGATAGGGGGTACTGTACCTGCACATCTAACTATTTTAAAGCCATTTAGAAAGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTAGCAAAATT</canonical_amplicon>
		<polymorphic_amplicon>ACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACTAGTCAGATGTGCAGATAGGGGGTACTGTAWCTGCACATCTAACTATTTTAAAGCCATTTAGAAAGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTAGCAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34505</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>67762</contig_pos>
        <strand>+</strand>
        <context>GCYATTTAGA[G/T]AGTTAGATGT</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGATAGGGGGTACTGTACCTGCACATCTAACTATTTTAAAGCCATTTAGA</left_flank>
        <right_flank>AGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTAGCAAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGCTCGATTTTTGTGCACAATTTGCATGATTCCGGGTGGCTGGAGCCACGGTTCACCGTCCACTTGAACCGGGATGGGCTCGTCGCCAAGGATTACGATACGCACGTGCCGACACTGAGCAATACGGTGGTTTTGGAGACGGTAGGCGTTTGGGACACGAGACGTCGCCACGTGGATCACACCGAAGAGGGCGACGACCTGGAAGTATTTTAGATGGGGGTACTGTAGTTTTTTTCAGGAGTACTGTATCTATCTATCTAGAGATGCAGGCAAGTTAGATGTGCAGGTAGCGCTACCAGGAGTACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACTAGTCAGATGTGCAGATAGGGGGTACTGTACCTGCACATCTAACTATTTTAAAGCCATTTAGAAAGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTAGCAAAATTTGGAAAATCCGAAAATTCCAAAAGTTCGAAAATCCAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCAAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGACCTAGAAAATCCAAAAATCTAGGTTACGGTACCTGCACATCAAAAAACTAACTAATGTCATTTTTAGCACACTTTTAGAGGTATTTCAGTCAGAATTTCACCAATTTCGAAAATTCGAAAAATTCATAAAATCATAATATAGGATTACTGTACCTCCAAAATGCGGTCATCAAAACTTTGGACCGTAAACTCCGGTCCCTCCTTATTCCGGCCCCAAAAGTTGGCACCGCCCGAGTACGATGGAATATTCAAGATTACGATTCCCTGTAGACTCGGCAAATCGATGG</canonical>
            <polymorphic>TGAGCTCGATTTTTGTGCACAATTTGCATGATTCCGGGTGGCTGGAGCCACGGTTCACCGTCCACTTGAACCGGGATGGGCTCGTCGCCAAGGATTACGATACGCACGTGCCGACACTGAGCAATACGGTGGTTTTGGAGACGGTAGGCGTTTGGGACACGAGACGTCGCCACGTGGATCACACCGAAGAGGGCGACGACCTGGAAGTATTTTAGATGGGGGTACTGTAGTTTTTTTCAGGAGTACTGTATCTATCTATCTAGAGATGCAGGCAAGTTAGATGTGCAGGTAGCGCTACCAGGAGTACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACTAGTCAGATGTGCAGATAGGGGGTACTGTACCTGCACATCTAACTATTTTAAAGCCATTTAGAKAGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTAGCAAAATTTGGAAAATCCGAAAATTCCAAAAGTTCGAAAATCCAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCAAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGACCTAGAAAATCCAAAAATCTAGGTTACGGTACCTGCACATCAAAAAACTAACTAATGTCATTTTTAGCACACTTTTAGAGGTATTTCAGTCAGAATTTCACCAATTTCGAAAATTCGAAAAATTCATAAAATCATAATATAGGATTACTGTACCTCCAAAATGCGGTCATCAAAACTTTGGACCGTAAACTCCGGTCCCTCCTTATTCCGGCCCCAAAAGTTGGCACCGCCCGAGTACGATGGAATATTCAAGATTACGATTCCCTGTAGACTCGGCAAATCGATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTACTGTACCTGCACATCTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGGAATTTTCGGATTT</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>GGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACTAGTCAGATGTGCAGATAGGGGGTACTGTACCTGCACATCTAACTATTTTAAAGCCATTTAGAAAGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTAGCAAAATTTGGAAAATCCGAAAATTCCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACTAGTCAGATGTGCAGATAGGGGGTACTGTACCTGCACATCTAACTATTTTAAAGCCATTTAGAKAGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTAGCAAAATTTGGAAAATCCGAAAATTCCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34506</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>67813</contig_pos>
        <strand></strand>
        <context>TAGCAAAATT[T/G]GGAAAATCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTAGCAAAATT</left_flank>
        <right_flank>GGAAAATCCGAAAATTCCAAAAGTTCGAAAATCCAAAAATTAGGTCATGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTCACCGTCCACTTGAACCGGGATGGGCTCGTCGCCAAGGATTACGATACGCACGTGCCGACACTGAGCAATACGGTGGTTTTGGAGACGGTAGGCGTTTGGGACACGAGACGTCGCCACGTGGATCACACCGAAGAGGGCGACGACCTGGAAGTATTTTAGATGGGGGTACTGTAGTTTTTTTCAGGAGTACTGTATCTATCTATCTAGAGATGCAGGCAAGTTAGATGTGCAGGTAGCGCTACCAGGAGTACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACTAGTCAGATGTGCAGATAGGGGGTACTGTACCTGCACATCTAACTATTTTAAAGCCATTTAGAAAGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTAGCAAAATTTGGAAAATCCGAAAATTCCAAAAGTTCGAAAATCCAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCAAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGACCTAGAAAATCCAAAAATCTAGGTTACGGTACCTGCACATCAAAAAACTAACTAATGTCATTTTTAGCACACTTTTAGAGGTATTTCAGTCAGAATTTCACCAATTTCGAAAATTCGAAAAATTCATAAAATCATAATATAGGATTACTGTACCTCCAAAATGCGGTCATCAAAACTTTGGACCGTAAACTCCGGTCCCTCCTTATTCCGGCCCCAAAAGTTGGCACCGCCCGAGTACGATGGAATATTCAAGATTACGATTCCCTGTAGACTCGGCAAATCGATGGGCACCCCGTCGCATTCCAGCTTGATCCTCTGCTCCAGATTACGGTAGGTAC</canonical>
            <polymorphic>GGTTCACCGTCCACTTGAACCGGGATGGGCTCGTCGCCAAGGATTACGATACGCACGTGCCGACACTGAGCAATACGGTGGTTTTGGAGACGGTAGGCGTTTGGGACACGAGACGTCGCCACGTGGATCACACCGAAGAGGGCGACGACCTGGAAGTATTTTAGATGGGGGTACTGTAGTTTTTTTCAGGAGTACTGTATCTATCTATCTAGAGATGCAGGCAAGTTAGATGTGCAGGTAGCGCTACCAGGAGTACTGTACCAACAAAGTTAGATGTGCAGATAGGGTTCATAGGGATTACTGTACCTGCACATCTAACTTGTTATACAGCTGAATGTGTTAGATTTGCAGGTACAGTAATCCATAGCTTTTCAACATTATAAACTAGTCAGATGTGCAGATAGGGGGTACTGTACCTGCACATCTAACTATTTTAAAGCCATTTAGAAAGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTAGCAAAATTKGGAAAATCCGAAAATTCCAAAAGTTCGAAAATCCAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCAAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGACCTAGAAAATCCAAAAATCTAGGTTACGGTACCTGCACATCAAAAAACTAACTAATGTCATTTTTAGCACACTTTTAGAGGTATTTCAGTCAGAATTTCACCAATTTCGAAAATTCGAAAAATTCATAAAATCATAATATAGGATTACTGTACCTCCAAAATGCGGTCATCAAAACTTTGGACCGTAAACTCCGGTCCCTCCTTATTCCGGCCCCAAAAGTTGGCACCGCCCGAGTACGATGGAATATTCAAGATTACGATTCCCTGTAGACTCGGCAAATCGATGGGCACCCCGTCGCATTCCAGCTTGATCCTCTGCTCCAGATTACGGTAGGTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>495 243 218 18 17 9</canonical_bands>
                <polymorphic_bands>512 243 218 18 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTTTCAACATTATAAACTAGTCAG</pcr_primer_p1>
		<pcr_primer_p2>AAAGTGTGCTAAAAATGACATTAG</pcr_primer_p2>
		<pcr_amplicon_size>371</pcr_amplicon_size>
		<canonical_amplicon>GCTTTTCAACATTATAAACTAGTCAGATGTGCAGATAGGGGGTACTGTACCTGCACATCTAACTATTTTAAAGCCATTTAGAAAGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTAGCAAAATTTGGAAAATCCGAAAATTCCAAAAGTTCGAAAATCCAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCAAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGACCTAGAAAATCCAAAAATCTAGGTTACGGTACCTGCACATCAAAAAACTAACTAATGTCATTTTTAGCACACTTT</canonical_amplicon>
		<polymorphic_amplicon>GCTTTTCAACATTATAAACTAGTCAGATGTGCAGATAGGGGGTACTGTACCTGCACATCTAACTATTTTAAAGCCATTTAGAAAGTTAGATGTGCAGGTAGCGCTTATAGGATTACTGTACTTTAGCAAAATTKGGAAAATCCGAAAATTCCAAAAGTTCGAAAATCCAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCAAAAAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGGCCTAGAAAATCCAAGAATTAGGTCATGACCTAGAAAATCCAAAAATCTAGGTTACGGTACCTGCACATCAAAAAACTAACTAATGTCATTTTTAGCACACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34507</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>79067</contig_pos>
        <strand>+</strand>
        <context>AGTCTGGAAA[A/T]TSGatttttt</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAA</left_flank>
        <right_flank>TGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATTAGTTCATGACCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAATCCGAAAAATTAGGTCATGGCCTAGAAAATCCAAAAATTAGTTCATGACCTAGAAAACCCAAAAATTAGGTCATGGCCTAGAAAATCCAAAGAACTAGGTCATGACCTAGAAAATCCGAAAAATCGATTTTCCACTTTTTCTGGGTCATTTTTTGCCAATTTTTCAGATTTTTAGGTCATTTTTGGGTCAATTTTCTTGATTTTTTGTGTCAAATTCTCAATTTTTCACACAAAAAACTCACTTTAGAATGCAAATTGAGCCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAATCAGTGGGCTGCCACCGGGAAGTCCGTCGCCTCCTGGAAATTTGAAATTTTCAGATTTTTTGAATTTTTGAAAAAAAAAATTTTTTTTTTCAAAAAATTTGAATTTTCGAGTTTTTCCTTGAGAACTGGACATTTCAAATGTATCCCATCAAATTGGAATTTGAAAATGCTTTAAAATGAGCTCAAACTCGACTAGGCTCCGCCCATTTTGAAATTTCACCCGGACACGTGACGCCCGACCGCGACGCACGACTGGAACATCAAAGTGGGCGGAGCTTAGTC</canonical>
            <polymorphic>AAAAATTAGTTCATGACCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAATCCGAAAAATTAGGTCATGGCCTAGAAAATCCAAAAATTAGTTCATGACCTAGAAAACCCAAAAATTAGGTCATGGCCTAGAAAATCCAAAGAACTAGGTCATGACCTAGAAAATCCGAAAAATCGATTTTCCACTTTTTCTGGGTCATTTTTTGCCAATTTTTCAGATTTTTAGGTCATTTTTGGGTCAATTTTCTTGATTTTTTGTGTCAAATTCTCAATTTTTCACACAAAAAACTCACTTTAGAATGCAAATTGAGCCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAAWTGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAATCAGTGGGCTGCCACCGGGAAGTCCGTCGCCTCCTGGAAATTTGAAATTTTCAGATTTTTTGAATTTTTGAAAAAAAAAATTTTTTTTTTCAAAAAATTTGAATTTTCGAGTTTTTCCTTGAGAACTGGACATTTCAAATGTATCCCATCAAATTGGAATTTGAAAATGCTTTAAAATGAGCTCAAACTCGACTAGGCTCCGCCCATTTTGAAATTTCACCCGGACACGTGACGCCCGACCGCGACGCACGACTGGAACATCAAAGTGGGCGGAGCTTAGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>145 103 94 89 85 70 55 50 35 34 32 28 28 23 17 17 16 16 14 14 7 7 6 6 6 3</canonical_bands>
                <polymorphic_bands>145 119 94 89 85 70 55 50 35 34 32 28 28 23 17 17 16 14 14 7 7 6 6 6 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTCACTTTAGAATGCAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCCCATTCAGGTTTTTGATA</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTCACTTTAGAATGCAAATTGAGCCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGA</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTCACTTTAGAATGCAAATTGAGCCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAAWTGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34508</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>79069</contig_pos>
        <strand>+</strand>
        <context>TCTGGAAAWT[C/G]Gattttttkr</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATT</left_flank>
        <right_flank>GATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTAGTTCATGACCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAATCCGAAAAATTAGGTCATGGCCTAGAAAATCCAAAAATTAGTTCATGACCTAGAAAACCCAAAAATTAGGTCATGGCCTAGAAAATCCAAAGAACTAGGTCATGACCTAGAAAATCCGAAAAATCGATTTTCCACTTTTTCTGGGTCATTTTTTGCCAATTTTTCAGATTTTTAGGTCATTTTTGGGTCAATTTTCTTGATTTTTTGTGTCAAATTCTCAATTTTTCACACAAAAAACTCACTTTAGAATGCAAATTGAGCCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAATCAGTGGGCTGCCACCGGGAAGTCCGTCGCCTCCTGGAAATTTGAAATTTTCAGATTTTTTGAATTTTTGAAAAAAAAAATTTTTTTTTTCAAAAAATTTGAATTTTCGAGTTTTTCCTTGAGAACTGGACATTTCAAATGTATCCCATCAAATTGGAATTTGAAAATGCTTTAAAATGAGCTCAAACTCGACTAGGCTCCGCCCATTTTGAAATTTCACCCGGACACGTGACGCCCGACCGCGACGCACGACTGGAACATCAAAGTGGGCGGAGCTTAGTCGA</canonical>
            <polymorphic>AAATTAGTTCATGACCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAATCCGAAAAATTAGGTCATGGCCTAGAAAATCCAAAAATTAGTTCATGACCTAGAAAACCCAAAAATTAGGTCATGGCCTAGAAAATCCAAAGAACTAGGTCATGACCTAGAAAATCCGAAAAATCGATTTTCCACTTTTTCTGGGTCATTTTTTGCCAATTTTTCAGATTTTTAGGTCATTTTTGGGTCAATTTTCTTGATTTTTTGTGTCAAATTCTCAATTTTTCACACAAAAAACTCACTTTAGAATGCAAATTGAGCCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTSGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAATCAGTGGGCTGCCACCGGGAAGTCCGTCGCCTCCTGGAAATTTGAAATTTTCAGATTTTTTGAATTTTTGAAAAAAAAAATTTTTTTTTTCAAAAAATTTGAATTTTCGAGTTTTTCCTTGAGAACTGGACATTTCAAATGTATCCCATCAAATTGGAATTTGAAAATGCTTTAAAATGAGCTCAAACTCGACTAGGCTCCGCCCATTTTGAAATTTCACCCGGACACGTGACGCCCGACCGCGACGCACGACTGGAACATCAAAGTGGGCGGAGCTTAGTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTCACTTTAGAATGCAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCCCATTCAGGTTTTTGATA</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTCACTTTAGAATGCAAATTGAGCCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGA</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTCACTTTAGAATGCAAATTGAGCCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTSGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34509</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>79078</contig_pos>
        <strand></strand>
        <context>TSGatttttt[T/G]raaattttym</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTT</left_flank>
        <right_flank>GAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGACCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAATCCGAAAAATTAGGTCATGGCCTAGAAAATCCAAAAATTAGTTCATGACCTAGAAAACCCAAAAATTAGGTCATGGCCTAGAAAATCCAAAGAACTAGGTCATGACCTAGAAAATCCGAAAAATCGATTTTCCACTTTTTCTGGGTCATTTTTTGCCAATTTTTCAGATTTTTAGGTCATTTTTGGGTCAATTTTCTTGATTTTTTGTGTCAAATTCTCAATTTTTCACACAAAAAACTCACTTTAGAATGCAAATTGAGCCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAATCAGTGGGCTGCCACCGGGAAGTCCGTCGCCTCCTGGAAATTTGAAATTTTCAGATTTTTTGAATTTTTGAAAAAAAAAATTTTTTTTTTCAAAAAATTTGAATTTTCGAGTTTTTCCTTGAGAACTGGACATTTCAAATGTATCCCATCAAATTGGAATTTGAAAATGCTTTAAAATGAGCTCAAACTCGACTAGGCTCCGCCCATTTTGAAATTTCACCCGGACACGTGACGCCCGACCGCGACGCACGACTGGAACATCAAAGTGGGCGGAGCTTAGTCGAGTTTGGGCT</canonical>
            <polymorphic>CATGACCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAATCCGAAAAATTAGGTCATGGCCTAGAAAATCCAAAAATTAGTTCATGACCTAGAAAACCCAAAAATTAGGTCATGGCCTAGAAAATCCAAAGAACTAGGTCATGACCTAGAAAATCCGAAAAATCGATTTTCCACTTTTTCTGGGTCATTTTTTGCCAATTTTTCAGATTTTTAGGTCATTTTTGGGTCAATTTTCTTGATTTTTTGTGTCAAATTCTCAATTTTTCACACAAAAAACTCACTTTAGAATGCAAATTGAGCCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTKGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAATCAGTGGGCTGCCACCGGGAAGTCCGTCGCCTCCTGGAAATTTGAAATTTTCAGATTTTTTGAATTTTTGAAAAAAAAAATTTTTTTTTTCAAAAAATTTGAATTTTCGAGTTTTTCCTTGAGAACTGGACATTTCAAATGTATCCCATCAAATTGGAATTTGAAAATGCTTTAAAATGAGCTCAAACTCGACTAGGCTCCGCCCATTTTGAAATTTCACCCGGACACGTGACGCCCGACCGCGACGCACGACTGGAACATCAAAGTGGGCGGAGCTTAGTCGAGTTTGGGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTCACTTTAGAATGCAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCCCATTCAGGTTTTTGATA</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTCACTTTAGAATGCAAATTGAGCCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGA</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTCACTTTAGAATGCAAATTGAGCCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTKGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34510</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>79079</contig_pos>
        <strand></strand>
        <context>SGattttttk[G/A]aaattttyma</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTT</left_flank>
        <right_flank>AAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGACCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAATCCGAAAAATTAGGTCATGGCCTAGAAAATCCAAAAATTAGTTCATGACCTAGAAAACCCAAAAATTAGGTCATGGCCTAGAAAATCCAAAGAACTAGGTCATGACCTAGAAAATCCGAAAAATCGATTTTCCACTTTTTCTGGGTCATTTTTTGCCAATTTTTCAGATTTTTAGGTCATTTTTGGGTCAATTTTCTTGATTTTTTGTGTCAAATTCTCAATTTTTCACACAAAAAACTCACTTTAGAATGCAAATTGAGCCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAATCAGTGGGCTGCCACCGGGAAGTCCGTCGCCTCCTGGAAATTTGAAATTTTCAGATTTTTTGAATTTTTGAAAAAAAAAATTTTTTTTTTCAAAAAATTTGAATTTTCGAGTTTTTCCTTGAGAACTGGACATTTCAAATGTATCCCATCAAATTGGAATTTGAAAATGCTTTAAAATGAGCTCAAACTCGACTAGGCTCCGCCCATTTTGAAATTTCACCCGGACACGTGACGCCCGACCGCGACGCACGACTGGAACATCAAAGTGGGCGGAGCTTAGTCGAGTTTGGGCTC</canonical>
            <polymorphic>ATGACCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAATCCGAAAAATTAGGTCATGGCCTAGAAAATCCAAAAATTAGTTCATGACCTAGAAAACCCAAAAATTAGGTCATGGCCTAGAAAATCCAAAGAACTAGGTCATGACCTAGAAAATCCGAAAAATCGATTTTCCACTTTTTCTGGGTCATTTTTTGCCAATTTTTCAGATTTTTAGGTCATTTTTGGGTCAATTTTCTTGATTTTTTGTGTCAAATTCTCAATTTTTCACACAAAAAACTCACTTTAGAATGCAAATTGAGCCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTRAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAATCAGTGGGCTGCCACCGGGAAGTCCGTCGCCTCCTGGAAATTTGAAATTTTCAGATTTTTTGAATTTTTGAAAAAAAAAATTTTTTTTTTCAAAAAATTTGAATTTTCGAGTTTTTCCTTGAGAACTGGACATTTCAAATGTATCCCATCAAATTGGAATTTGAAAATGCTTTAAAATGAGCTCAAACTCGACTAGGCTCCGCCCATTTTGAAATTTCACCCGGACACGTGACGCCCGACCGCGACGCACGACTGGAACATCAAAGTGGGCGGAGCTTAGTCGAGTTTGGGCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>496 453 51</canonical_bands>
                <polymorphic_bands>547 453</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTCACTTTAGAATGCAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCCCATTCAGGTTTTTGATA</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTCACTTTAGAATGCAAATTGAGCCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGA</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTCACTTTAGAATGCAAATTGAGCCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTRAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34511</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>79087</contig_pos>
        <strand></strand>
        <context>tkraaatttt[T/C]maaaaaaaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTT</left_flank>
        <right_flank>CAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAATCCGAAAAATTAGGTCATGGCCTAGAAAATCCAAAAATTAGTTCATGACCTAGAAAACCCAAAAATTAGGTCATGGCCTAGAAAATCCAAAGAACTAGGTCATGACCTAGAAAATCCGAAAAATCGATTTTCCACTTTTTCTGGGTCATTTTTTGCCAATTTTTCAGATTTTTAGGTCATTTTTGGGTCAATTTTCTTGATTTTTTGTGTCAAATTCTCAATTTTTCACACAAAAAACTCACTTTAGAATGCAAATTGAGCCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAATCAGTGGGCTGCCACCGGGAAGTCCGTCGCCTCCTGGAAATTTGAAATTTTCAGATTTTTTGAATTTTTGAAAAAAAAAATTTTTTTTTTCAAAAAATTTGAATTTTCGAGTTTTTCCTTGAGAACTGGACATTTCAAATGTATCCCATCAAATTGGAATTTGAAAATGCTTTAAAATGAGCTCAAACTCGACTAGGCTCCGCCCATTTTGAAATTTCACCCGGACACGTGACGCCCGACCGCGACGCACGACTGGAACATCAAAGTGGGCGGAGCTTAGTCGAGTTTGGGCTCATTTCGAA</canonical>
            <polymorphic>GAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAATCCGAAAAATTAGGTCATGGCCTAGAAAATCCAAAAATTAGTTCATGACCTAGAAAACCCAAAAATTAGGTCATGGCCTAGAAAATCCAAAGAACTAGGTCATGACCTAGAAAATCCGAAAAATCGATTTTCCACTTTTTCTGGGTCATTTTTTGCCAATTTTTCAGATTTTTAGGTCATTTTTGGGTCAATTTTCTTGATTTTTTGTGTCAAATTCTCAATTTTTCACACAAAAAACTCACTTTAGAATGCAAATTGAGCCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTYCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAATCAGTGGGCTGCCACCGGGAAGTCCGTCGCCTCCTGGAAATTTGAAATTTTCAGATTTTTTGAATTTTTGAAAAAAAAAATTTTTTTTTTCAAAAAATTTGAATTTTCGAGTTTTTCCTTGAGAACTGGACATTTCAAATGTATCCCATCAAATTGGAATTTGAAAATGCTTTAAAATGAGCTCAAACTCGACTAGGCTCCGCCCATTTTGAAATTTCACCCGGACACGTGACGCCCGACCGCGACGCACGACTGGAACATCAAAGTGGGCGGAGCTTAGTCGAGTTTGGGCTCATTTCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>504 445 51</canonical_bands>
                <polymorphic_bands>555 445</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTCACTTTAGAATGCAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCCCATTCAGGTTTTTGATA</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTCACTTTAGAATGCAAATTGAGCCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGA</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTCACTTTAGAATGCAAATTGAGCCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTYCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34512</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>79088</contig_pos>
        <strand></strand>
        <context>kraaatttty[C/A]aaaaaaaatt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTT</left_flank>
        <right_flank>AAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCAT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAATCCGAAAAATTAGGTCATGGCCTAGAAAATCCAAAAATTAGTTCATGACCTAGAAAACCCAAAAATTAGGTCATGGCCTAGAAAATCCAAAGAACTAGGTCATGACCTAGAAAATCCGAAAAATCGATTTTCCACTTTTTCTGGGTCATTTTTTGCCAATTTTTCAGATTTTTAGGTCATTTTTGGGTCAATTTTCTTGATTTTTTGTGTCAAATTCTCAATTTTTCACACAAAAAACTCACTTTAGAATGCAAATTGAGCCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAATCAGTGGGCTGCCACCGGGAAGTCCGTCGCCTCCTGGAAATTTGAAATTTTCAGATTTTTTGAATTTTTGAAAAAAAAAATTTTTTTTTTCAAAAAATTTGAATTTTCGAGTTTTTCCTTGAGAACTGGACATTTCAAATGTATCCCATCAAATTGGAATTTGAAAATGCTTTAAAATGAGCTCAAACTCGACTAGGCTCCGCCCATTTTGAAATTTCACCCGGACACGTGACGCCCGACCGCGACGCACGACTGGAACATCAAAGTGGGCGGAGCTTAGTCGAGTTTGGGCTCATTTCGAAG</canonical>
            <polymorphic>AAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAATCCGAAAAATTAGGTCATGGCCTAGAAAATCCAAAAATTAGTTCATGACCTAGAAAACCCAAAAATTAGGTCATGGCCTAGAAAATCCAAAGAACTAGGTCATGACCTAGAAAATCCGAAAAATCGATTTTCCACTTTTTCTGGGTCATTTTTTGCCAATTTTTCAGATTTTTAGGTCATTTTTGGGTCAATTTTCTTGATTTTTTGTGTCAAATTCTCAATTTTTCACACAAAAAACTCACTTTAGAATGCAAATTGAGCCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTTMAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAATCAGTGGGCTGCCACCGGGAAGTCCGTCGCCTCCTGGAAATTTGAAATTTTCAGATTTTTTGAATTTTTGAAAAAAAAAATTTTTTTTTTCAAAAAATTTGAATTTTCGAGTTTTTCCTTGAGAACTGGACATTTCAAATGTATCCCATCAAATTGGAATTTGAAAATGCTTTAAAATGAGCTCAAACTCGACTAGGCTCCGCCCATTTTGAAATTTCACCCGGACACGTGACGCCCGACCGCGACGCACGACTGGAACATCAAAGTGGGCGGAGCTTAGTCGAGTTTGGGCTCATTTCGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>505 444 51</canonical_bands>
                <polymorphic_bands>556 444</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTTGCGAGAAGAATGTTAG</pcr_primer_p1>
		<pcr_primer_p2>ATTGTACTAATCAACGCGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAAT</canonical_amplicon>
		<polymorphic_amplicon>GAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTTMAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34513</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>79131</contig_pos>
        <strand>+</strand>
        <context>CRGCYATTTT[C/T]AGCTCATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTT</left_flank>
        <right_flank>AGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAATCCGAAAAATTAGGTCATGGCCTAGAAAATCCAAAAATTAGTTCATGACCTAGAAAACCCAAAAATTAGGTCATGGCCTAGAAAATCCAAAGAACTAGGTCATGACCTAGAAAATCCGAAAAATCGATTTTCCACTTTTTCTGGGTCATTTTTTGCCAATTTTTCAGATTTTTAGGTCATTTTTGGGTCAATTTTCTTGATTTTTTGTGTCAAATTCTCAATTTTTCACACAAAAAACTCACTTTAGAATGCAAATTGAGCCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAATCAGTGGGCTGCCACCGGGAAGTCCGTCGCCTCCTGGAAATTTGAAATTTTCAGATTTTTTGAATTTTTGAAAAAAAAAATTTTTTTTTTCAAAAAATTTGAATTTTCGAGTTTTTCCTTGAGAACTGGACATTTCAAATGTATCCCATCAAATTGGAATTTGAAAATGCTTTAAAATGAGCTCAAACTCGACTAGGCTCCGCCCATTTTGAAATTTCACCCGGACACGTGACGCCCGACCGCGACGCACGACTGGAACATCAAAGTGGGCGGAGCTTAGTCGAGTTTGGGCTCATTTCGAAGCTTTCATTAAGATAAGTAAGAAAAACACACTAATTTTTGAAAA</canonical>
            <polymorphic>TAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAACCCAAAGAACTAGGTCATGGCCTAGAAAATCCGAAAAATTAGGTCATGGCCTAGAAAATCCAAAAATTAGTTCATGACCTAGAAAACCCAAAAATTAGGTCATGGCCTAGAAAATCCAAAGAACTAGGTCATGACCTAGAAAATCCGAAAAATCGATTTTCCACTTTTTCTGGGTCATTTTTTGCCAATTTTTCAGATTTTTAGGTCATTTTTGGGTCAATTTTCTTGATTTTTTGTGTCAAATTCTCAATTTTTCACACAAAAAACTCACTTTAGAATGCAAATTGAGCCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTYAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAATCAGTGGGCTGCCACCGGGAAGTCCGTCGCCTCCTGGAAATTTGAAATTTTCAGATTTTTTGAATTTTTGAAAAAAAAAATTTTTTTTTTCAAAAAATTTGAATTTTCGAGTTTTTCCTTGAGAACTGGACATTTCAAATGTATCCCATCAAATTGGAATTTGAAAATGCTTTAAAATGAGCTCAAACTCGACTAGGCTCCGCCCATTTTGAAATTTCACCCGGACACGTGACGCCCGACCGCGACGCACGACTGGAACATCAAAGTGGGCGGAGCTTAGTCGAGTTTGGGCTCATTTCGAAGCTTTCATTAAGATAAGTAAGAAAAACACACTAATTTTTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTTGCGAGAAGAATGTTAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTACTAATCAACGCGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAAT</canonical_amplicon>
		<polymorphic_amplicon>GAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTYAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34514</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>79338</contig_pos>
        <strand></strand>
        <context>TGAAATTTTC[A/T]Gattttttga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTGGGCTGCCACCGGGAAGTCCGTCGCCTCCTGGAAATTTGAAATTTTC</left_flank>
        <right_flank>GATTTTTTGAATTTTTGAAAAAAAAAATTTTTTTTTTCAAAAAATTTGAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCACTTTTTCTGGGTCATTTTTTGCCAATTTTTCAGATTTTTAGGTCATTTTTGGGTCAATTTTCTTGATTTTTTGTGTCAAATTCTCAATTTTTCACACAAAAAACTCACTTTAGAATGCAAATTGAGCCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAATCAGTGGGCTGCCACCGGGAAGTCCGTCGCCTCCTGGAAATTTGAAATTTTCAGATTTTTTGAATTTTTGAAAAAAAAAATTTTTTTTTTCAAAAAATTTGAATTTTCGAGTTTTTCCTTGAGAACTGGACATTTCAAATGTATCCCATCAAATTGGAATTTGAAAATGCTTTAAAATGAGCTCAAACTCGACTAGGCTCCGCCCATTTTGAAATTTCACCCGGACACGTGACGCCCGACCGCGACGCACGACTGGAACATCAAAGTGGGCGGAGCTTAGTCGAGTTTGGGCTCATTTCGAAGCTTTCATTAAGATAAGTAAGAAAAACACACTAATTTTTGAAAAAAAAAACTGATTTTCAGCCAAAAAAAAGCTGAAAAATCAAAAATTTCAAGAAAAAAATTTTCAGCCAATTTTCAGTTTTTTTTTCCCGATTTTTTCGCCATTGCTCATCCTTCACCTACCGTATGCCTCCTCTCTCAACAACGCCGTTCCATTGGGACTGACCGATTTCAGTGCCAACGGAGAAATGACTGAAAGTGCCGAATGACC</canonical>
            <polymorphic>TCCACTTTTTCTGGGTCATTTTTTGCCAATTTTTCAGATTTTTAGGTCATTTTTGGGTCAATTTTCTTGATTTTTTGTGTCAAATTCTCAATTTTTCACACAAAAAACTCACTTTAGAATGCAAATTGAGCCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAATCAGTGGGCTGCCACCGGGAAGTCCGTCGCCTCCTGGAAATTTGAAATTTTCWGATTTTTTGAATTTTTGAAAAAAAAAATTTTTTTTTTCAAAAAATTTGAATTTTCGAGTTTTTCCTTGAGAACTGGACATTTCAAATGTATCCCATCAAATTGGAATTTGAAAATGCTTTAAAATGAGCTCAAACTCGACTAGGCTCCGCCCATTTTGAAATTTCACCCGGACACGTGACGCCCGACCGCGACGCACGACTGGAACATCAAAGTGGGCGGAGCTTAGTCGAGTTTGGGCTCATTTCGAAGCTTTCATTAAGATAAGTAAGAAAAACACACTAATTTTTGAAAAAAAAAACTGATTTTCAGCCAAAAAAAAGCTGAAAAATCAAAAATTTCAAGAAAAAAATTTTCAGCCAATTTTCAGTTTTTTTTTCCCGATTTTTTCGCCATTGCTCATCCTTCACCTACCGTATGCCTCCTCTCTCAACAACGCCGTTCCATTGGGACTGACCGATTTCAGTGCCAACGGAGAAATGACTGAAAGTGCCGAATGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATGATATCAAAAACCTGAAT</pcr_primer_p1>
		<pcr_primer_p2>TTGAAATGTCCAGTTCTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAATCAGTGGGCTGCCACCGGGAAGTCCGTCGCCTCCTGGAAATTTGAAATTTTCAGATTTTTTGAATTTTTGAAAAAAAAAATTTTTTTTTTCAAAAAATTTGAATTTTCGAGTTTTTCCTTGAGAACTGGACATTTCAA</canonical_amplicon>
		<polymorphic_amplicon>CGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAATCAGTGGGCTGCCACCGGGAAGTCCGTCGCCTCCTGGAAATTTGAAATTTTCWGATTTTTTGAATTTTTGAAAAAAAAAATTTTTTTTTTCAAAAAATTTGAATTTTCGAGTTTTTCCTTGAGAACTGGACATTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34515</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>79468</contig_pos>
        <strand></strand>
        <context>taaaatgagc[T/C]caaactcgac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTCAAATGTATCCCATCAAATTGGAATTTGAAAATGCTTTAAAATGAGC</left_flank>
        <right_flank>CAAACTCGACTAGGCTCCGCCCATTTTGAAATTTCACCCGGACACGTGAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAATCAGTGGGCTGCCACCGGGAAGTCCGTCGCCTCCTGGAAATTTGAAATTTTCAGATTTTTTGAATTTTTGAAAAAAAAAATTTTTTTTTTCAAAAAATTTGAATTTTCGAGTTTTTCCTTGAGAACTGGACATTTCAAATGTATCCCATCAAATTGGAATTTGAAAATGCTTTAAAATGAGCTCAAACTCGACTAGGCTCCGCCCATTTTGAAATTTCACCCGGACACGTGACGCCCGACCGCGACGCACGACTGGAACATCAAAGTGGGCGGAGCTTAGTCGAGTTTGGGCTCATTTCGAAGCTTTCATTAAGATAAGTAAGAAAAACACACTAATTTTTGAAAAAAAAAACTGATTTTCAGCCAAAAAAAAGCTGAAAAATCAAAAATTTCAAGAAAAAAATTTTCAGCCAATTTTCAGTTTTTTTTTCCCGATTTTTTCGCCATTGCTCATCCTTCACCTACCGTATGCCTCCTCTCTCAACAACGCCGTTCCATTGGGACTGACCGATTTCAGTGCCAACGGAGAAATGACTGAAAGTGCCGAATGACCCAAACTACACGAACGGGCGAGCTGAGCAATGCACGTGTCATGGACACAGCAGCCACACCAGATGCAACGATAATCCTGGAAATTTGAAAAAAAGTGAATTTCGCGGTCGGGCGGGAATTTGAAAATTTCA</canonical>
            <polymorphic>CCTGTCGAATGCGCTTAGCACCCATCCGACAGTTCCGTCACCGCCACACACGAGAACACGAAACGATTCGAGTTGCGAGAAGAATGTTAGTCTGGAAATTGGATTTTTTTGAAATTTTTCAAAAAAAATTTTTTTTTGAAAATTTCAATTTTCGGCTATTTTTAGCTCATTTTTTCAGCCAAATTTCAGCCAAACTCACGCAAAATCGGGTCCCGTCGCGATGATATCAAAAACCTGAATGGGATTCAGAATCCGCCGGAACTTTTTGATAATTCGTTGTCCCTGACTATCACCCGATTTCGCGTTGATTAGTACAATCAGTGGGCTGCCACCGGGAAGTCCGTCGCCTCCTGGAAATTTGAAATTTTCAGATTTTTTGAATTTTTGAAAAAAAAAATTTTTTTTTTCAAAAAATTTGAATTTTCGAGTTTTTCCTTGAGAACTGGACATTTCAAATGTATCCCATCAAATTGGAATTTGAAAATGCTTTAAAATGAGCYCAAACTCGACTAGGCTCCGCCCATTTTGAAATTTCACCCGGACACGTGACGCCCGACCGCGACGCACGACTGGAACATCAAAGTGGGCGGAGCTTAGTCGAGTTTGGGCTCATTTCGAAGCTTTCATTAAGATAAGTAAGAAAAACACACTAATTTTTGAAAAAAAAAACTGATTTTCAGCCAAAAAAAAGCTGAAAAATCAAAAATTTCAAGAAAAAAATTTTCAGCCAATTTTCAGTTTTTTTTTCCCGATTTTTTCGCCATTGCTCATCCTTCACCTACCGTATGCCTCCTCTCTCAACAACGCCGTTCCATTGGGACTGACCGATTTCAGTGCCAACGGAGAAATGACTGAAAGTGCCGAATGACCCAAACTACACGAACGGGCGAGCTGAGCAATGCACGTGTCATGGACACAGCAGCCACACCAGATGCAACGATAATCCTGGAAATTTGAAAAAAAGTGAATTTCGCGGTCGGGCGGGAATTTGAAAATTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>333 200 165 109 94 71 28</canonical_bands>
                <polymorphic_bands>427 200 165 109 71 28</polymorphic_bands>
            </assay>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>500 390 110</canonical_bands>
                <polymorphic_bands>610 390</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>500 390 110</canonical_bands>
                <polymorphic_bands>610 390</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>173 164 155 136 78 78 60 36 31 16 16 13 12 11 11 10</canonical_bands>
                <polymorphic_bands>189 164 155 136 78 78 60 36 31 16 13 12 11 11 10</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCGAGTTTTTCCTTGAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAAAAATTAGTGTGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCGAGTTTTTCCTTGAGAACTGGACATTTCAAATGTATCCCATCAAATTGGAATTTGAAAATGCTTTAAAATGAGCTCAAACTCGACTAGGCTCCGCCCATTTTGAAATTTCACCCGGACACGTGACGCCCGACCGCGACGCACGACTGGAACATCAAAGTGGGCGGAGCTTAGTCGAGTTTGGGCTCATTTCGAAGCTTTCATTAAGATAAGTAAGAAAAACACACTAATTTTTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCGAGTTTTTCCTTGAGAACTGGACATTTCAAATGTATCCCATCAAATTGGAATTTGAAAATGCTTTAAAATGAGCYCAAACTCGACTAGGCTCCGCCCATTTTGAAATTTCACCCGGACACGTGACGCCCGACCGCGACGCACGACTGGAACATCAAAGTGGGCGGAGCTTAGTCGAGTTTGGGCTCATTTCGAAGCTTTCATTAAGATAAGTAAGAAAAACACACTAATTTTTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34516</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>86567</contig_pos>
        <strand></strand>
        <context>GTGTACAACG[C/G]TTAATGTCAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACG</left_flank>
        <right_flank>TTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTCATGTATGCAATC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGGGGGATCAAATGGATCCTAGAAAGCCCGAATGACGTCTGTCTGTTTGTCTGTTTGTCCGGACAAGGTTTTCAGCCTTCACTTATCATTAAATATTTGGCTTCAGAAAAAATGTGTAATTTTTGAAACAGTGAATTTTTTTCGAATTTTTAGGAATCCAATTTTTTTTGACTTTTGGATTTTTTTTTTGGTTCTTTAGCATTCTGGATTATGCTTTTTACAAGAATTGAAAATAATGTTGAAGCTTAGTTACTGTTTCCCAAAATTCTATAACAGTCGAATCAGGTTTTCTAGAAGTTTCAGAAATATTAGAATTCGATGAAAATGAAGAAAATTGTAAAAAAGTTCCAAATAAGAAAGATTTACTGTTGAAATAGGCAAAAGGCAAAAATCCCAAAAATTGCTCCTATCATTCTTTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTCATGTATGCAATCGGGCGTGCGCTTTCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCGCCTTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGAAATTCCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAACAATTTTCTCTGGGTAAAATAATTCCGATTGGGGCGATTTTTGAAATTTTACTATATTCAAGAGTCTGGATCTCGGCTGTCAAGTATTCGATCATTTTGAAAACTTTGGAGGGTATAAAACAGGCCTAGATTGAGAACTTTGCATTTACAGAATTTTTCGAAAATTCCTATTTTTTCCGATATGAGGCAATTTCTGAAAGACACCCGCTTTGCTCTTTTTTTTGTACTGAAAAAACTAGGAATTTTCGAAAATTCTGTGAATGCAAAATTTTCAATCTAGGTCTGTTTTAGACCCTCCAAAATT</canonical>
            <polymorphic>TTTTGGGGGATCAAATGGATCCTAGAAAGCCCGAATGACGTCTGTCTGTTTGTCTGTTTGTCCGGACAAGGTTTTCAGCCTTCACTTATCATTAAATATTTGGCTTCAGAAAAAATGTGTAATTTTTGAAACAGTGAATTTTTTTCGAATTTTTAGGAATCCAATTTTTTTTGACTTTTGGATTTTTTTTTTGGTTCTTTAGCATTCTGGATTATGCTTTTTACAAGAATTGAAAATAATGTTGAAGCTTAGTTACTGTTTCCCAAAATTCTATAACAGTCGAATCAGGTTTTCTAGAAGTTTCAGAAATATTAGAATTCGATGAAAATGAAGAAAATTGTAAAAAAGTTCCAAATAAGAAAGATTTACTGTTGAAATAGGCAAAAGGCAAAAATCCCAAAAATTGCTCCTATCATTCTTTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGSTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTCATGTATGCAATCGGGCGTGCGCTTTCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCGCCTTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGAAATTCCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAACAATTTTCTCTGGGTAAAATAATTCCGATTGGGGCGATTTTTGAAATTTTACTATATTCAAGAGTCTGGATCTCGGCTGTCAAGTATTCGATCATTTTGAAAACTTTGGAGGGTATAAAACAGGCCTAGATTGAGAACTTTGCATTTACAGAATTTTTCGAAAATTCCTATTTTTTCCGATATGAGGCAATTTCTGAAAGACACCCGCTTTGCTCTTTTTTTTGTACTGAAAAAACTAGGAATTTTCGAAAATTCTGTGAATGCAAAATTTTCAATCTAGGTCTGTTTTAGACCCTCCAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGGAGATTTTTCGTAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TATTTTACCCAGAGAAAATTGTTA</pcr_primer_p2>
		<pcr_amplicon_size>282</pcr_amplicon_size>
		<canonical_amplicon>ACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTCATGTATGCAATCGGGCGTGCGCTTTCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCGCCTTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGAAATTCCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAACAATTTTCTCTGGGTAAAATA</canonical_amplicon>
		<polymorphic_amplicon>ACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGSTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTCATGTATGCAATCGGGCGTGCGCTTTCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCGCCTTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGAAATTCCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAACAATTTTCTCTGGGTAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34517</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>86759</contig_pos>
        <strand>+</strand>
        <context>TCCCCCCACC[G/T]TTAACAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATCTTTGAACGAAATTCCGAGAACATTATTTTTTTCATGTCCCCCCACC</left_flank>
        <right_flank>TTAACAATTTTCTCTGGGTAAAATAATTCCGATTGGGGCGATTTTTGAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTCTTTAGCATTCTGGATTATGCTTTTTACAAGAATTGAAAATAATGTTGAAGCTTAGTTACTGTTTCCCAAAATTCTATAACAGTCGAATCAGGTTTTCTAGAAGTTTCAGAAATATTAGAATTCGATGAAAATGAAGAAAATTGTAAAAAAGTTCCAAATAAGAAAGATTTACTGTTGAAATAGGCAAAAGGCAAAAATCCCAAAAATTGCTCCTATCATTCTTTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTCATGTATGCAATCGGGCGTGCGCTTTCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCGCCTTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGAAATTCCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAACAATTTTCTCTGGGTAAAATAATTCCGATTGGGGCGATTTTTGAAATTTTACTATATTCAAGAGTCTGGATCTCGGCTGTCAAGTATTCGATCATTTTGAAAACTTTGGAGGGTATAAAACAGGCCTAGATTGAGAACTTTGCATTTACAGAATTTTTCGAAAATTCCTATTTTTTCCGATATGAGGCAATTTCTGAAAGACACCCGCTTTGCTCTTTTTTTTGTACTGAAAAAACTAGGAATTTTCGAAAATTCTGTGAATGCAAAATTTTCAATCTAGGTCTGTTTTAGACCCTCCAAAATTTCCAAAATGATCGGAACCTTGAGAGCCGAGCTCCAGACTCTGAAAATTGGTTGGAAATCAACTGGAAAACAGGTTTTCGAATATCTTATTGATTGGTACTGTAACTCTAATAAAGGAAACTTCACATTCCAAGACTGATAATTTCATTGAAGTTATTGTTTCATAATTTGATATCAATAATATCATTTTTTA</canonical>
            <polymorphic>GGTTCTTTAGCATTCTGGATTATGCTTTTTACAAGAATTGAAAATAATGTTGAAGCTTAGTTACTGTTTCCCAAAATTCTATAACAGTCGAATCAGGTTTTCTAGAAGTTTCAGAAATATTAGAATTCGATGAAAATGAAGAAAATTGTAAAAAAGTTCCAAATAAGAAAGATTTACTGTTGAAATAGGCAAAAGGCAAAAATCCCAAAAATTGCTCCTATCATTCTTTTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTCATGTATGCAATCGGGCGTGCGCTTTCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCGCCTTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGAAATTCCGAGAACATTATTTTTTTCATGTCCCCCCACCKTTAACAATTTTCTCTGGGTAAAATAATTCCGATTGGGGCGATTTTTGAAATTTTACTATATTCAAGAGTCTGGATCTCGGCTGTCAAGTATTCGATCATTTTGAAAACTTTGGAGGGTATAAAACAGGCCTAGATTGAGAACTTTGCATTTACAGAATTTTTCGAAAATTCCTATTTTTTCCGATATGAGGCAATTTCTGAAAGACACCCGCTTTGCTCTTTTTTTTGTACTGAAAAAACTAGGAATTTTCGAAAATTCTGTGAATGCAAAATTTTCAATCTAGGTCTGTTTTAGACCCTCCAAAATTTCCAAAATGATCGGAACCTTGAGAGCCGAGCTCCAGACTCTGAAAATTGGTTGGAAATCAACTGGAAAACAGGTTTTCGAATATCTTATTGATTGGTACTGTAACTCTAATAAAGGAAACTTCACATTCCAAGACTGATAATTTCATTGAAGTTATTGTTTCATAATTTGATATCAATAATATCATTTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAGTATGCATTCTACCGTCAC</pcr_primer_p1>
		<pcr_primer_p2>GGAATGTGAAGTTTCCTTTATTA</pcr_primer_p2>
		<pcr_amplicon_size>665</pcr_amplicon_size>
		<canonical_amplicon>TAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTCATGTATGCAATCGGGCGTGCGCTTTCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCGCCTTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGAAATTCCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAACAATTTTCTCTGGGTAAAATAATTCCGATTGGGGCGATTTTTGAAATTTTACTATATTCAAGAGTCTGGATCTCGGCTGTCAAGTATTCGATCATTTTGAAAACTTTGGAGGGTATAAAACAGGCCTAGATTGAGAACTTTGCATTTACAGAATTTTTCGAAAATTCCTATTTTTTCCGATATGAGGCAATTTCTGAAAGACACCCGCTTTGCTCTTTTTTTTGTACTGAAAAAACTAGGAATTTTCGAAAATTCTGTGAATGCAAAATTTTCAATCTAGGTCTGTTTTAGACCCTCCAAAATTTCCAAAATGATCGGAACCTTGAGAGCCGAGCTCCAGACTCTGAAAATTGGTTGGAAATCAACTGGAAAACAGGTTTTCGAATATCTTATTGATTGGTACTGTAACTCTAATAAAGGAAACTTCACATTCC</canonical_amplicon>
		<polymorphic_amplicon>TAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTCATGTATGCAATCGGGCGTGCGCTTTCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCGCCTTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGAAATTCCGAGAACATTATTTTTTTCATGTCCCCCCACCKTTAACAATTTTCTCTGGGTAAAATAATTCCGATTGGGGCGATTTTTGAAATTTTACTATATTCAAGAGTCTGGATCTCGGCTGTCAAGTATTCGATCATTTTGAAAACTTTGGAGGGTATAAAACAGGCCTAGATTGAGAACTTTGCATTTACAGAATTTTTCGAAAATTCCTATTTTTTCCGATATGAGGCAATTTCTGAAAGACACCCGCTTTGCTCTTTTTTTTGTACTGAAAAAACTAGGAATTTTCGAAAATTCTGTGAATGCAAAATTTTCAATCTAGGTCTGTTTTAGACCCTCCAAAATTTCCAAAATGATCGGAACCTTGAGAGCCGAGCTCCAGACTCTGAAAATTGGTTGGAAATCAACTGGAAAACAGGTTTTCGAATATCTTATTGATTGGTACTGTAACTCTAATAAAGGAAACTTCACATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34518</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>88290</contig_pos>
        <strand></strand>
        <context>gataagcggt[G/T]ttgaagttga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGTAATTGACCACATTTTTGTACAAACTGAAGGAAACGAGATAAGCGGT</left_flank>
        <right_flank>TTGAAGTTGAACAACTAGCCTTTTGGGCATATCTCATCAGAGTGGAATTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATGGATAAATCTTATACTTACTACCCTCTAGGGTCATGAGAATACATGAAACAGAAAAAAAAGTTTCCTAAAACTTTTATCTCTGTAATAGTGGCTGGAACTAATGTGACTGCTCTGAAAATCTTTCAGTAACTAATTTCAGAAGTTTCCAGGTGAAAATAGCAACCATTTTTGTTTGTCTTGTTGGCCGATACTGTAAGTCAGAATATGAAATGCAATGAAAACAATTTAAGCGTAATATGGAATGATATTGAATTAAAACAATATTTGACAAGCTATATGAATTTTTGAAACAGAAATAAATAATTCAAAAGGGTAAATTTCTGAAAATTCAAAAAACGTATTACAATGGTTATACAGAAATGTCCCGTGAAAAAGTTGTCAAGATATTTTTTTTGCTTGACTGAAAATTTTAGAGTATACTGAACAAAACTTGAGCATCATTTTTGTAATTGACCACATTTTTGTACAAACTGAAGGAAACGAGATAAGCGGTGTTGAAGTTGAACAACTAGCCTTTTGGGCATATCTCATCAGAGTGGAATTCGGCCAAAAAGATGTCAATTACAAAATTAAAGCTTTATTTTTGTTCAGTATACTCGGAAATTTTCAGACATAACTAAAAATTCTACACTACTCTTATTTATTACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCACTTTTTGAAAACGGATTTGGAATCAGGAAAATGTCAGCTTTCAGTTGATATAGGTCACCACCCGTATCGCCACTCCCGAGTCGGGGTCTTCCCTAGTGAAATGTATTTATCTATTATAGTAAAAAAATCATTTGAAAATTACAATAAAAGCTGAAACAGAAAAAAAAATCATTTCGATTTTTTGCCGTTTCAAATTTTAACTATTTAATCTATCCTAAATAAAAAACGTTGCTGCGAGATCTTCACAGTTAACTTGAAAACTAATAAAAATTGGAGATTTTCTAATACGTAAAAGTGGCTGAAACTAGTATGATTA</canonical>
            <polymorphic>AAAATGGATAAATCTTATACTTACTACCCTCTAGGGTCATGAGAATACATGAAACAGAAAAAAAAGTTTCCTAAAACTTTTATCTCTGTAATAGTGGCTGGAACTAATGTGACTGCTCTGAAAATCTTTCAGTAACTAATTTCAGAAGTTTCCAGGTGAAAATAGCAACCATTTTTGTTTGTCTTGTTGGCCGATACTGTAAGTCAGAATATGAAATGCAATGAAAACAATTTAAGCGTAATATGGAATGATATTGAATTAAAACAATATTTGACAAGCTATATGAATTTTTGAAACAGAAATAAATAATTCAAAAGGGTAAATTTCTGAAAATTCAAAAAACGTATTACAATGGTTATACAGAAATGTCCCGTGAAAAAGTTGTCAAGATATTTTTTTTGCTTGACTGAAAATTTTAGAGTATACTGAACAAAACTTGAGCATCATTTTTGTAATTGACCACATTTTTGTACAAACTGAAGGAAACGAGATAAGCGGTKTTGAAGTTGAACAACTAGCCTTTTGGGCATATCTCATCAGAGTGGAATTCGGCCAAAAAGATGTCAATTACAAAATTAAAGCTTTATTTTTGTTCAGTATACTCGGAAATTTTCAGACATAACTAAAAATTCTACACTACTCTTATTTATTACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCACTTTTTGAAAACGGATTTGGAATCAGGAAAATGTCAGCTTTCAGTTGATATAGGTCACCACCCGTATCGCCACTCCCGAGTCGGGGTCTTCCCTAGTGAAATGTATTTATCTATTATAGTAAAAAAATCATTTGAAAATTACAATAAAAGCTGAAACAGAAAAAAAAATCATTTCGATTTTTTGCCGTTTCAAATTTTAACTATTTAATCTATCCTAAATAAAAAACGTTGCTGCGAGATCTTCACAGTTAACTTGAAAACTAATAAAAATTGGAGATTTTCTAATACGTAAAAGTGGCTGAAACTAGTATGATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>217 147 96 92 87 57 52 47 44 38 30 26 19 18 15 12 3</canonical_bands>
                <polymorphic_bands>217 147 96 92 87 82 57 52 47 30 26 19 18 15 12 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGTCCCGTGAAAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>GACATTTTCCTGATTCCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>356</pcr_amplicon_size>
		<canonical_amplicon>AAATGTCCCGTGAAAAAGTTGTCAAGATATTTTTTTTGCTTGACTGAAAATTTTAGAGTATACTGAACAAAACTTGAGCATCATTTTTGTAATTGACCACATTTTTGTACAAACTGAAGGAAACGAGATAAGCGGTGTTGAAGTTGAACAACTAGCCTTTTGGGCATATCTCATCAGAGTGGAATTCGGCCAAAAAGATGTCAATTACAAAATTAAAGCTTTATTTTTGTTCAGTATACTCGGAAATTTTCAGACATAACTAAAAATTCTACACTACTCTTATTTATTACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCACTTTTTGAAAACGGATTTGGAATCAGGAAAATGTC</canonical_amplicon>
		<polymorphic_amplicon>AAATGTCCCGTGAAAAAGTTGTCAAGATATTTTTTTTGCTTGACTGAAAATTTTAGAGTATACTGAACAAAACTTGAGCATCATTTTTGTAATTGACCACATTTTTGTACAAACTGAAGGAAACGAGATAAGCGGTKTTGAAGTTGAACAACTAGCCTTTTGGGCATATCTCATCAGAGTGGAATTCGGCCAAAAAGATGTCAATTACAAAATTAAAGCTTTATTTTTGTTCAGTATACTCGGAAATTTTCAGACATAACTAAAAATTCTACACTACTCTTATTTATTACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCACTTTTTGAAAACGGATTTGGAATCAGGAAAATGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34519</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>88344</contig_pos>
        <strand></strand>
        <context>ggaattcggc[C/T]aaaaagatgt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGTTGAACAACTAGCCTTTTGGGCATATCTCATCAGAGTGGAATTCGGC</left_flank>
        <right_flank>AAAAAGATGTCAATTACAAAATTAAAGCTTTATTTTTGTTCAGTATACTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAAAAAAAAGTTTCCTAAAACTTTTATCTCTGTAATAGTGGCTGGAACTAATGTGACTGCTCTGAAAATCTTTCAGTAACTAATTTCAGAAGTTTCCAGGTGAAAATAGCAACCATTTTTGTTTGTCTTGTTGGCCGATACTGTAAGTCAGAATATGAAATGCAATGAAAACAATTTAAGCGTAATATGGAATGATATTGAATTAAAACAATATTTGACAAGCTATATGAATTTTTGAAACAGAAATAAATAATTCAAAAGGGTAAATTTCTGAAAATTCAAAAAACGTATTACAATGGTTATACAGAAATGTCCCGTGAAAAAGTTGTCAAGATATTTTTTTTGCTTGACTGAAAATTTTAGAGTATACTGAACAAAACTTGAGCATCATTTTTGTAATTGACCACATTTTTGTACAAACTGAAGGAAACGAGATAAGCGGTGTTGAAGTTGAACAACTAGCCTTTTGGGCATATCTCATCAGAGTGGAATTCGGCCAAAAAGATGTCAATTACAAAATTAAAGCTTTATTTTTGTTCAGTATACTCGGAAATTTTCAGACATAACTAAAAATTCTACACTACTCTTATTTATTACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCACTTTTTGAAAACGGATTTGGAATCAGGAAAATGTCAGCTTTCAGTTGATATAGGTCACCACCCGTATCGCCACTCCCGAGTCGGGGTCTTCCCTAGTGAAATGTATTTATCTATTATAGTAAAAAAATCATTTGAAAATTACAATAAAAGCTGAAACAGAAAAAAAAATCATTTCGATTTTTTGCCGTTTCAAATTTTAACTATTTAATCTATCCTAAATAAAAAACGTTGCTGCGAGATCTTCACAGTTAACTTGAAAACTAATAAAAATTGGAGATTTTCTAATACGTAAAAGTGGCTGAAACTAGTATGATTAATCTGAAAATCTTCAAAGACAAATTCCAGGTGAAAAAAGCTCAAAAATTGAAAG</canonical>
            <polymorphic>CAGAAAAAAAAGTTTCCTAAAACTTTTATCTCTGTAATAGTGGCTGGAACTAATGTGACTGCTCTGAAAATCTTTCAGTAACTAATTTCAGAAGTTTCCAGGTGAAAATAGCAACCATTTTTGTTTGTCTTGTTGGCCGATACTGTAAGTCAGAATATGAAATGCAATGAAAACAATTTAAGCGTAATATGGAATGATATTGAATTAAAACAATATTTGACAAGCTATATGAATTTTTGAAACAGAAATAAATAATTCAAAAGGGTAAATTTCTGAAAATTCAAAAAACGTATTACAATGGTTATACAGAAATGTCCCGTGAAAAAGTTGTCAAGATATTTTTTTTGCTTGACTGAAAATTTTAGAGTATACTGAACAAAACTTGAGCATCATTTTTGTAATTGACCACATTTTTGTACAAACTGAAGGAAACGAGATAAGCGGTGTTGAAGTTGAACAACTAGCCTTTTGGGCATATCTCATCAGAGTGGAATTCGGCYAAAAAGATGTCAATTACAAAATTAAAGCTTTATTTTTGTTCAGTATACTCGGAAATTTTCAGACATAACTAAAAATTCTACACTACTCTTATTTATTACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCACTTTTTGAAAACGGATTTGGAATCAGGAAAATGTCAGCTTTCAGTTGATATAGGTCACCACCCGTATCGCCACTCCCGAGTCGGGGTCTTCCCTAGTGAAATGTATTTATCTATTATAGTAAAAAAATCATTTGAAAATTACAATAAAAGCTGAAACAGAAAAAAAAATCATTTCGATTTTTTGCCGTTTCAAATTTTAACTATTTAATCTATCCTAAATAAAAAACGTTGCTGCGAGATCTTCACAGTTAACTTGAAAACTAATAAAAATTGGAGATTTTCTAATACGTAAAAGTGGCTGAAACTAGTATGATTAATCTGAAAATCTTCAAAGACAAATTCCAGGTGAAAAAAGCTCAAAAATTGAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>502 362 136</canonical_bands>
                <polymorphic_bands>864 136</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 362 134</canonical_bands>
                <polymorphic_bands>866 134</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>240 148 113 93 88 79 61 57 43 34 29 15</canonical_bands>
                <polymorphic_bands>240 148 113 93 88 79 63 61 57 43 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGTCCCGTGAAAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>GACATTTTCCTGATTCCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>356</pcr_amplicon_size>
		<canonical_amplicon>AAATGTCCCGTGAAAAAGTTGTCAAGATATTTTTTTTGCTTGACTGAAAATTTTAGAGTATACTGAACAAAACTTGAGCATCATTTTTGTAATTGACCACATTTTTGTACAAACTGAAGGAAACGAGATAAGCGGTGTTGAAGTTGAACAACTAGCCTTTTGGGCATATCTCATCAGAGTGGAATTCGGCCAAAAAGATGTCAATTACAAAATTAAAGCTTTATTTTTGTTCAGTATACTCGGAAATTTTCAGACATAACTAAAAATTCTACACTACTCTTATTTATTACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCACTTTTTGAAAACGGATTTGGAATCAGGAAAATGTC</canonical_amplicon>
		<polymorphic_amplicon>AAATGTCCCGTGAAAAAGTTGTCAAGATATTTTTTTTGCTTGACTGAAAATTTTAGAGTATACTGAACAAAACTTGAGCATCATTTTTGTAATTGACCACATTTTTGTACAAACTGAAGGAAACGAGATAAGCGGTGTTGAAGTTGAACAACTAGCCTTTTGGGCATATCTCATCAGAGTGGAATTCGGCYAAAAAGATGTCAATTACAAAATTAAAGCTTTATTTTTGTTCAGTATACTCGGAAATTTTCAGACATAACTAAAAATTCTACACTACTCTTATTTATTACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCACTTTTTGAAAACGGATTTGGAATCAGGAAAATGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34520</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>88432</contig_pos>
        <strand>+</strand>
        <context>ctacACTACT[C/T]TTATTTATta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTCAGTATACTCGGAAATTTTCAGACATAACTAAAAATTCTACACTACT</left_flank>
        <right_flank>TTATTTATTACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCACTTTTTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAAGTTTCCAGGTGAAAATAGCAACCATTTTTGTTTGTCTTGTTGGCCGATACTGTAAGTCAGAATATGAAATGCAATGAAAACAATTTAAGCGTAATATGGAATGATATTGAATTAAAACAATATTTGACAAGCTATATGAATTTTTGAAACAGAAATAAATAATTCAAAAGGGTAAATTTCTGAAAATTCAAAAAACGTATTACAATGGTTATACAGAAATGTCCCGTGAAAAAGTTGTCAAGATATTTTTTTTGCTTGACTGAAAATTTTAGAGTATACTGAACAAAACTTGAGCATCATTTTTGTAATTGACCACATTTTTGTACAAACTGAAGGAAACGAGATAAGCGGTGTTGAAGTTGAACAACTAGCCTTTTGGGCATATCTCATCAGAGTGGAATTCGGCCAAAAAGATGTCAATTACAAAATTAAAGCTTTATTTTTGTTCAGTATACTCGGAAATTTTCAGACATAACTAAAAATTCTACACTACTCTTATTTATTACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCACTTTTTGAAAACGGATTTGGAATCAGGAAAATGTCAGCTTTCAGTTGATATAGGTCACCACCCGTATCGCCACTCCCGAGTCGGGGTCTTCCCTAGTGAAATGTATTTATCTATTATAGTAAAAAAATCATTTGAAAATTACAATAAAAGCTGAAACAGAAAAAAAAATCATTTCGATTTTTTGCCGTTTCAAATTTTAACTATTTAATCTATCCTAAATAAAAAACGTTGCTGCGAGATCTTCACAGTTAACTTGAAAACTAATAAAAATTGGAGATTTTCTAATACGTAAAAGTGGCTGAAACTAGTATGATTAATCTGAAAATCTTCAAAGACAAATTCCAGGTGAAAAAAGCTCAAAAATTGAAAGCTTCCCGATTTTTGCTTTAAAGAGAGTTTGCAGGAAAGTGCGCTCTACGGTGATCCCATTACAATAGAGCGCGTTTGCAAATTCTCTA</canonical>
            <polymorphic>CAGAAGTTTCCAGGTGAAAATAGCAACCATTTTTGTTTGTCTTGTTGGCCGATACTGTAAGTCAGAATATGAAATGCAATGAAAACAATTTAAGCGTAATATGGAATGATATTGAATTAAAACAATATTTGACAAGCTATATGAATTTTTGAAACAGAAATAAATAATTCAAAAGGGTAAATTTCTGAAAATTCAAAAAACGTATTACAATGGTTATACAGAAATGTCCCGTGAAAAAGTTGTCAAGATATTTTTTTTGCTTGACTGAAAATTTTAGAGTATACTGAACAAAACTTGAGCATCATTTTTGTAATTGACCACATTTTTGTACAAACTGAAGGAAACGAGATAAGCGGTGTTGAAGTTGAACAACTAGCCTTTTGGGCATATCTCATCAGAGTGGAATTCGGCCAAAAAGATGTCAATTACAAAATTAAAGCTTTATTTTTGTTCAGTATACTCGGAAATTTTCAGACATAACTAAAAATTCTACACTACTYTTATTTATTACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCACTTTTTGAAAACGGATTTGGAATCAGGAAAATGTCAGCTTTCAGTTGATATAGGTCACCACCCGTATCGCCACTCCCGAGTCGGGGTCTTCCCTAGTGAAATGTATTTATCTATTATAGTAAAAAAATCATTTGAAAATTACAATAAAAGCTGAAACAGAAAAAAAAATCATTTCGATTTTTTGCCGTTTCAAATTTTAACTATTTAATCTATCCTAAATAAAAAACGTTGCTGCGAGATCTTCACAGTTAACTTGAAAACTAATAAAAATTGGAGATTTTCTAATACGTAAAAGTGGCTGAAACTAGTATGATTAATCTGAAAATCTTCAAAGACAAATTCCAGGTGAAAAAAGCTCAAAAATTGAAAGCTTCCCGATTTTTGCTTTAAAGAGAGTTTGCAGGAAAGTGCGCTCTACGGTGATCCCATTACAATAGAGCGCGTTTGCAAATTCTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGTCCCGTGAAAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>GACATTTTCCTGATTCCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>356</pcr_amplicon_size>
		<canonical_amplicon>AAATGTCCCGTGAAAAAGTTGTCAAGATATTTTTTTTGCTTGACTGAAAATTTTAGAGTATACTGAACAAAACTTGAGCATCATTTTTGTAATTGACCACATTTTTGTACAAACTGAAGGAAACGAGATAAGCGGTGTTGAAGTTGAACAACTAGCCTTTTGGGCATATCTCATCAGAGTGGAATTCGGCCAAAAAGATGTCAATTACAAAATTAAAGCTTTATTTTTGTTCAGTATACTCGGAAATTTTCAGACATAACTAAAAATTCTACACTACTCTTATTTATTACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCACTTTTTGAAAACGGATTTGGAATCAGGAAAATGTC</canonical_amplicon>
		<polymorphic_amplicon>AAATGTCCCGTGAAAAAGTTGTCAAGATATTTTTTTTGCTTGACTGAAAATTTTAGAGTATACTGAACAAAACTTGAGCATCATTTTTGTAATTGACCACATTTTTGTACAAACTGAAGGAAACGAGATAAGCGGTGTTGAAGTTGAACAACTAGCCTTTTGGGCATATCTCATCAGAGTGGAATTCGGCCAAAAAGATGTCAATTACAAAATTAAAGCTTTATTTTTGTTCAGTATACTCGGAAATTTTCAGACATAACTAAAAATTCTACACTACTYTTATTTATTACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCACTTTTTGAAAACGGATTTGGAATCAGGAAAATGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34521</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>88574</contig_pos>
        <strand>+</strand>
        <context>TCCCTAGTGA[A/G]ATGTATTTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAGGTCACCACCCGTATCGCCACTCCCGAGTCGGGGTCTTCCCTAGTGA</left_flank>
        <right_flank>ATGTATTTATCTATTATAGTAAAAAAATCATTTGAAAATTACAATAAAAG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTTTTGAAACAGAAATAAATAATTCAAAAGGGTAAATTTCTGAAAATTCAAAAAACGTATTACAATGGTTATACAGAAATGTCCCGTGAAAAAGTTGTCAAGATATTTTTTTTGCTTGACTGAAAATTTTAGAGTATACTGAACAAAACTTGAGCATCATTTTTGTAATTGACCACATTTTTGTACAAACTGAAGGAAACGAGATAAGCGGTGTTGAAGTTGAACAACTAGCCTTTTGGGCATATCTCATCAGAGTGGAATTCGGCCAAAAAGATGTCAATTACAAAATTAAAGCTTTATTTTTGTTCAGTATACTCGGAAATTTTCAGACATAACTAAAAATTCTACACTACTCTTATTTATTACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCACTTTTTGAAAACGGATTTGGAATCAGGAAAATGTCAGCTTTCAGTTGATATAGGTCACCACCCGTATCGCCACTCCCGAGTCGGGGTCTTCCCTAGTGAAATGTATTTATCTATTATAGTAAAAAAATCATTTGAAAATTACAATAAAAGCTGAAACAGAAAAAAAAATCATTTCGATTTTTTGCCGTTTCAAATTTTAACTATTTAATCTATCCTAAATAAAAAACGTTGCTGCGAGATCTTCACAGTTAACTTGAAAACTAATAAAAATTGGAGATTTTCTAATACGTAAAAGTGGCTGAAACTAGTATGATTAATCTGAAAATCTTCAAAGACAAATTCCAGGTGAAAAAAGCTCAAAAATTGAAAGCTTCCCGATTTTTGCTTTAAAGAGAGTTTGCAGGAAAGTGCGCTCTACGGTGATCCCATTACAATAGAGCGCGTTTGCAAATTCTCTAATCTGCACGAGTAGGCTGTGCTGAATGGATCTCTCCTCGTTTGATTACTCGGATTACAGAATTATGAATGAAGGGGGATAAAGAAGACGTCGTCTTCTTTTCCATTCTGAAGGATTTGCTCTCTCCAAATCCGATCAAAACC</canonical>
            <polymorphic>GAATTTTTGAAACAGAAATAAATAATTCAAAAGGGTAAATTTCTGAAAATTCAAAAAACGTATTACAATGGTTATACAGAAATGTCCCGTGAAAAAGTTGTCAAGATATTTTTTTTGCTTGACTGAAAATTTTAGAGTATACTGAACAAAACTTGAGCATCATTTTTGTAATTGACCACATTTTTGTACAAACTGAAGGAAACGAGATAAGCGGTGTTGAAGTTGAACAACTAGCCTTTTGGGCATATCTCATCAGAGTGGAATTCGGCCAAAAAGATGTCAATTACAAAATTAAAGCTTTATTTTTGTTCAGTATACTCGGAAATTTTCAGACATAACTAAAAATTCTACACTACTCTTATTTATTACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCACTTTTTGAAAACGGATTTGGAATCAGGAAAATGTCAGCTTTCAGTTGATATAGGTCACCACCCGTATCGCCACTCCCGAGTCGGGGTCTTCCCTAGTGARATGTATTTATCTATTATAGTAAAAAAATCATTTGAAAATTACAATAAAAGCTGAAACAGAAAAAAAAATCATTTCGATTTTTTGCCGTTTCAAATTTTAACTATTTAATCTATCCTAAATAAAAAACGTTGCTGCGAGATCTTCACAGTTAACTTGAAAACTAATAAAAATTGGAGATTTTCTAATACGTAAAAGTGGCTGAAACTAGTATGATTAATCTGAAAATCTTCAAAGACAAATTCCAGGTGAAAAAAGCTCAAAAATTGAAAGCTTCCCGATTTTTGCTTTAAAGAGAGTTTGCAGGAAAGTGCGCTCTACGGTGATCCCATTACAATAGAGCGCGTTTGCAAATTCTCTAATCTGCACGAGTAGGCTGTGCTGAATGGATCTCTCCTCGTTTGATTACTCGGATTACAGAATTATGAATGAAGGGGGATAAAGAAGACGTCGTCTTCTTTTCCATTCTGAAGGATTTGCTCTCTCCAAATCCGATCAAAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGCTTTCAGTTGATATAGGTC</pcr_primer_p1>
		<pcr_primer_p2>TCTCCAATTTTTATTAGTTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TCAGCTTTCAGTTGATATAGGTCACCACCCGTATCGCCACTCCCGAGTCGGGGTCTTCCCTAGTGAAATGTATTTATCTATTATAGTAAAAAAATCATTTGAAAATTACAATAAAAGCTGAAACAGAAAAAAAAATCATTTCGATTTTTTGCCGTTTCAAATTTTAACTATTTAATCTATCCTAAATAAAAAACGTTGCTGCGAGATCTTCACAGTTAACTTGAAAACTAATAAAAATTGGAGA</canonical_amplicon>
		<polymorphic_amplicon>TCAGCTTTCAGTTGATATAGGTCACCACCCGTATCGCCACTCCCGAGTCGGGGTCTTCCCTAGTGARATGTATTTATCTATTATAGTAAAAAAATCATTTGAAAATTACAATAAAAGCTGAAACAGAAAAAAAAATCATTTCGATTTTTTGCCGTTTCAAATTTTAACTATTTAATCTATCCTAAATAAAAAACGTTGCTGCGAGATCTTCACAGTTAACTTGAAAACTAATAAAAATTGGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34522</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>98566</contig_pos>
        <strand>+</strand>
        <context>TGTTTTTTTG[A/G]CGAGTTGCGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGCTTTCAACTCTTCAGCCAATTTCGATGGATTTGTGCTTGTTTTTTTG</left_flank>
        <right_flank>CGAGTTGCGATCGTTGGCGATCCCTAAACAAGTTATATAAATGATGTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGCGCATTGTGCGAGCATATAGGATCCACGCGCCAACCAAAGCATATAGGATCCACGCCGCCACACAGCATCCCCGCTCTTCCCCCAGGTTATAATCTCTGTGAACTGAAAAGGACGTTTATCAATATAGTTTATTAATAACCAATAAAAACTACAACAATCGACGGGAACAAATTGAAGGGGAAAAAAAAACAAAAAATTAAGTGATTTTCGCATCCTGGCTTGCGGAATCCGACTCGATTGTTTATTTTTGTTTTCGAAGGACCTGATTTTTTGGAAGTGAGCAGTAGATTGAAGAAAAAACCAGTAAGCGAACCGGAAACCACGAACGAAACGCGTTGGTCCAATTCTATTCGAAGTTCAACATCACTCTGGAAAAATTTAAAAGCGGTGTGAACTGAGGTTTTGAAAAGTTACATTTGAGGAGCATAATTGCAAGCTTCTAATTGTGCTTTCAACTCTTCAGCCAATTTCGATGGATTTGTGCTTGTTTTTTTGGCGAGTTGCGATCGTTGGCGATCCCTAAACAAGTTATATAAATGATGTTAAGATGGAAGTTTTTAAACTCACAACAAGTTATCAATGACTTCTCTCACGAGTCGTGTTGTATAAGTTTGAAGAGGGAGAGAAGACGACTGTCTGAAGCCGGCAATGACGAAGTCTGACAATGAAACACTCTTTCGAGGTAATTGAAGCAAAGGACACTCACTTGTGACGACTTCGAAGAAGGCATTTCCTAGTGGAGTGTATCCTCTATTGGATTCGCTAGAAGCGGAATATGCGGGAAAAAACGGATCTTTATCAGCAACCTGCAATGAGAATGGGATTAATAATTTTAATATAAAAATTAGAGATGAGAAATCCTTACTTTGGTGAAAATGTGCCGGACTAAACTTTTCGCGTCCGTTTTATAATTTGAAGACGTCCAACTAGATGCGGTGAGAACTGAAATGCAGCTTGACATTTTTAGTGTCCTGCCACTTGGCAAAACGACGACAT</canonical>
            <polymorphic>GGGCGCATTGTGCGAGCATATAGGATCCACGCGCCAACCAAAGCATATAGGATCCACGCCGCCACACAGCATCCCCGCTCTTCCCCCAGGTTATAATCTCTGTGAACTGAAAAGGACGTTTATCAATATAGTTTATTAATAACCAATAAAAACTACAACAATCGACGGGAACAAATTGAAGGGGAAAAAAAAACAAAAAATTAAGTGATTTTCGCATCCTGGCTTGCGGAATCCGACTCGATTGTTTATTTTTGTTTTCGAAGGACCTGATTTTTTGGAAGTGAGCAGTAGATTGAAGAAAAAACCAGTAAGCGAACCGGAAACCACGAACGAAACGCGTTGGTCCAATTCTATTCGAAGTTCAACATCACTCTGGAAAAATTTAAAAGCGGTGTGAACTGAGGTTTTGAAAAGTTACATTTGAGGAGCATAATTGCAAGCTTCTAATTGTGCTTTCAACTCTTCAGCCAATTTCGATGGATTTGTGCTTGTTTTTTTGRCGAGTTGCGATCGTTGGCGATCCCTAAACAAGTTATATAAATGATGTTAAGATGGAAGTTTTTAAACTCACAACAAGTTATCAATGACTTCTCTCACGAGTCGTGTTGTATAAGTTTGAAGAGGGAGAGAAGACGACTGTCTGAAGCCGGCAATGACGAAGTCTGACAATGAAACACTCTTTCGAGGTAATTGAAGCAAAGGACACTCACTTGTGACGACTTCGAAGAAGGCATTTCCTAGTGGAGTGTATCCTCTATTGGATTCGCTAGAAGCGGAATATGCGGGAAAAAACGGATCTTTATCAGCAACCTGCAATGAGAATGGGATTAATAATTTTAATATAAAAATTAGAGATGAGAAATCCTTACTTTGGTGAAAATGTGCCGGACTAAACTTTTCGCGTCCGTTTTATAATTTGAAGACGTCCAACTAGATGCGGTGAGAACTGAAATGCAGCTTGACATTTTTAGTGTCCTGCCACTTGGCAAAACGACGACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTCGAAGTTCAACATCACTCT</pcr_primer_p1>
		<pcr_primer_p2>ACTCGTGAGAGAAGTCATTGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATTCGAAGTTCAACATCACTCTGGAAAAATTTAAAAGCGGTGTGAACTGAGGTTTTGAAAAGTTACATTTGAGGAGCATAATTGCAAGCTTCTAATTGTGCTTTCAACTCTTCAGCCAATTTCGATGGATTTGTGCTTGTTTTTTTGGCGAGTTGCGATCGTTGGCGATCCCTAAACAAGTTATATAAATGATGTTAAGATGGAAGTTTTTAAACTCACAACAAGTTATCAATGACTTCTCTCACGAGT</canonical_amplicon>
		<polymorphic_amplicon>TATTCGAAGTTCAACATCACTCTGGAAAAATTTAAAAGCGGTGTGAACTGAGGTTTTGAAAAGTTACATTTGAGGAGCATAATTGCAAGCTTCTAATTGTGCTTTCAACTCTTCAGCCAATTTCGATGGATTTGTGCTTGTTTTTTTGRCGAGTTGCGATCGTTGGCGATCCCTAAACAAGTTATATAAATGATGTTAAGATGGAAGTTTTTAAACTCACAACAAGTTATCAATGACTTCTCTCACGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34523</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>98604</contig_pos>
        <strand>+</strand>
        <context>ACAAGTTATA[C/T]AAATGATGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTGTTTTTTTGGCGAGTTGCGATCGTTGGCGATCCCTAAACAAGTTATA</left_flank>
        <right_flank>AAATGATGTTAAGATGGAAGTTTTTAAACTCACAACAAGTTATCAATGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAGCATATAGGATCCACGCCGCCACACAGCATCCCCGCTCTTCCCCCAGGTTATAATCTCTGTGAACTGAAAAGGACGTTTATCAATATAGTTTATTAATAACCAATAAAAACTACAACAATCGACGGGAACAAATTGAAGGGGAAAAAAAAACAAAAAATTAAGTGATTTTCGCATCCTGGCTTGCGGAATCCGACTCGATTGTTTATTTTTGTTTTCGAAGGACCTGATTTTTTGGAAGTGAGCAGTAGATTGAAGAAAAAACCAGTAAGCGAACCGGAAACCACGAACGAAACGCGTTGGTCCAATTCTATTCGAAGTTCAACATCACTCTGGAAAAATTTAAAAGCGGTGTGAACTGAGGTTTTGAAAAGTTACATTTGAGGAGCATAATTGCAAGCTTCTAATTGTGCTTTCAACTCTTCAGCCAATTTCGATGGATTTGTGCTTGTTTTTTTGGCGAGTTGCGATCGTTGGCGATCCCTAAACAAGTTATATAAATGATGTTAAGATGGAAGTTTTTAAACTCACAACAAGTTATCAATGACTTCTCTCACGAGTCGTGTTGTATAAGTTTGAAGAGGGAGAGAAGACGACTGTCTGAAGCCGGCAATGACGAAGTCTGACAATGAAACACTCTTTCGAGGTAATTGAAGCAAAGGACACTCACTTGTGACGACTTCGAAGAAGGCATTTCCTAGTGGAGTGTATCCTCTATTGGATTCGCTAGAAGCGGAATATGCGGGAAAAAACGGATCTTTATCAGCAACCTGCAATGAGAATGGGATTAATAATTTTAATATAAAAATTAGAGATGAGAAATCCTTACTTTGGTGAAAATGTGCCGGACTAAACTTTTCGCGTCCGTTTTATAATTTGAAGACGTCCAACTAGATGCGGTGAGAACTGAAATGCAGCTTGACATTTTTAGTGTCCTGCCACTTGGCAAAACGACGACATCTCCGATATTCGTGGCTTCTTCTAGATCGAACCCGCAT</canonical>
            <polymorphic>CAAAGCATATAGGATCCACGCCGCCACACAGCATCCCCGCTCTTCCCCCAGGTTATAATCTCTGTGAACTGAAAAGGACGTTTATCAATATAGTTTATTAATAACCAATAAAAACTACAACAATCGACGGGAACAAATTGAAGGGGAAAAAAAAACAAAAAATTAAGTGATTTTCGCATCCTGGCTTGCGGAATCCGACTCGATTGTTTATTTTTGTTTTCGAAGGACCTGATTTTTTGGAAGTGAGCAGTAGATTGAAGAAAAAACCAGTAAGCGAACCGGAAACCACGAACGAAACGCGTTGGTCCAATTCTATTCGAAGTTCAACATCACTCTGGAAAAATTTAAAAGCGGTGTGAACTGAGGTTTTGAAAAGTTACATTTGAGGAGCATAATTGCAAGCTTCTAATTGTGCTTTCAACTCTTCAGCCAATTTCGATGGATTTGTGCTTGTTTTTTTGGCGAGTTGCGATCGTTGGCGATCCCTAAACAAGTTATAYAAATGATGTTAAGATGGAAGTTTTTAAACTCACAACAAGTTATCAATGACTTCTCTCACGAGTCGTGTTGTATAAGTTTGAAGAGGGAGAGAAGACGACTGTCTGAAGCCGGCAATGACGAAGTCTGACAATGAAACACTCTTTCGAGGTAATTGAAGCAAAGGACACTCACTTGTGACGACTTCGAAGAAGGCATTTCCTAGTGGAGTGTATCCTCTATTGGATTCGCTAGAAGCGGAATATGCGGGAAAAAACGGATCTTTATCAGCAACCTGCAATGAGAATGGGATTAATAATTTTAATATAAAAATTAGAGATGAGAAATCCTTACTTTGGTGAAAATGTGCCGGACTAAACTTTTCGCGTCCGTTTTATAATTTGAAGACGTCCAACTAGATGCGGTGAGAACTGAAATGCAGCTTGACATTTTTAGTGTCCTGCCACTTGGCAAAACGACGACATCTCCGATATTCGTGGCTTCTTCTAGATCGAACCCGCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTCGAAGTTCAACATCACTCT</pcr_primer_p1>
		<pcr_primer_p2>ACTCGTGAGAGAAGTCATTGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATTCGAAGTTCAACATCACTCTGGAAAAATTTAAAAGCGGTGTGAACTGAGGTTTTGAAAAGTTACATTTGAGGAGCATAATTGCAAGCTTCTAATTGTGCTTTCAACTCTTCAGCCAATTTCGATGGATTTGTGCTTGTTTTTTTGGCGAGTTGCGATCGTTGGCGATCCCTAAACAAGTTATATAAATGATGTTAAGATGGAAGTTTTTAAACTCACAACAAGTTATCAATGACTTCTCTCACGAGT</canonical_amplicon>
		<polymorphic_amplicon>TATTCGAAGTTCAACATCACTCTGGAAAAATTTAAAAGCGGTGTGAACTGAGGTTTTGAAAAGTTACATTTGAGGAGCATAATTGCAAGCTTCTAATTGTGCTTTCAACTCTTCAGCCAATTTCGATGGATTTGTGCTTGTTTTTTTGGCGAGTTGCGATCGTTGGCGATCCCTAAACAAGTTATAYAAATGATGTTAAGATGGAAGTTTTTAAACTCACAACAAGTTATCAATGACTTCTCTCACGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34524</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>98799</contig_pos>
        <strand>+</strand>
        <context>CGAAGAAGGC[A/T]TTTYCTAGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGAGGTAATTGAAGCAAAGGACACTCACTTGTGACGACTTCGAAGAAGGC</left_flank>
        <right_flank>TTTCCTAGTGGAGTGTATCCTCTATTGGATTCGCTAGAAGCGGAATATGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACTCGATTGTTTATTTTTGTTTTCGAAGGACCTGATTTTTTGGAAGTGAGCAGTAGATTGAAGAAAAAACCAGTAAGCGAACCGGAAACCACGAACGAAACGCGTTGGTCCAATTCTATTCGAAGTTCAACATCACTCTGGAAAAATTTAAAAGCGGTGTGAACTGAGGTTTTGAAAAGTTACATTTGAGGAGCATAATTGCAAGCTTCTAATTGTGCTTTCAACTCTTCAGCCAATTTCGATGGATTTGTGCTTGTTTTTTTGGCGAGTTGCGATCGTTGGCGATCCCTAAACAAGTTATATAAATGATGTTAAGATGGAAGTTTTTAAACTCACAACAAGTTATCAATGACTTCTCTCACGAGTCGTGTTGTATAAGTTTGAAGAGGGAGAGAAGACGACTGTCTGAAGCCGGCAATGACGAAGTCTGACAATGAAACACTCTTTCGAGGTAATTGAAGCAAAGGACACTCACTTGTGACGACTTCGAAGAAGGCATTTCCTAGTGGAGTGTATCCTCTATTGGATTCGCTAGAAGCGGAATATGCGGGAAAAAACGGATCTTTATCAGCAACCTGCAATGAGAATGGGATTAATAATTTTAATATAAAAATTAGAGATGAGAAATCCTTACTTTGGTGAAAATGTGCCGGACTAAACTTTTCGCGTCCGTTTTATAATTTGAAGACGTCCAACTAGATGCGGTGAGAACTGAAATGCAGCTTGACATTTTTAGTGTCCTGCCACTTGGCAAAACGACGACATCTCCGATATTCGTGGCTTCTTCTAGATCGAACCCGCATTGGGGGTTAACGAACGGTTCATTGGATCTCAAATCATCCGATTCCGTTATTTTTAGACGACGTAAAGTTTTGTTCAACTGAAATATTATGTTGTCGGTTTACAGTGCAAAACGTAATGTTATTACCATTTCTGTGAGGCAAGCAACGCCCAACGCAAGATTTTCAACCTCCGAATTGGTGCCGTGAGCACGTGCA</canonical>
            <polymorphic>CGACTCGATTGTTTATTTTTGTTTTCGAAGGACCTGATTTTTTGGAAGTGAGCAGTAGATTGAAGAAAAAACCAGTAAGCGAACCGGAAACCACGAACGAAACGCGTTGGTCCAATTCTATTCGAAGTTCAACATCACTCTGGAAAAATTTAAAAGCGGTGTGAACTGAGGTTTTGAAAAGTTACATTTGAGGAGCATAATTGCAAGCTTCTAATTGTGCTTTCAACTCTTCAGCCAATTTCGATGGATTTGTGCTTGTTTTTTTGGCGAGTTGCGATCGTTGGCGATCCCTAAACAAGTTATATAAATGATGTTAAGATGGAAGTTTTTAAACTCACAACAAGTTATCAATGACTTCTCTCACGAGTCGTGTTGTATAAGTTTGAAGAGGGAGAGAAGACGACTGTCTGAAGCCGGCAATGACGAAGTCTGACAATGAAACACTCTTTCGAGGTAATTGAAGCAAAGGACACTCACTTGTGACGACTTCGAAGAAGGCWTTTCCTAGTGGAGTGTATCCTCTATTGGATTCGCTAGAAGCGGAATATGCGGGAAAAAACGGATCTTTATCAGCAACCTGCAATGAGAATGGGATTAATAATTTTAATATAAAAATTAGAGATGAGAAATCCTTACTTTGGTGAAAATGTGCCGGACTAAACTTTTCGCGTCCGTTTTATAATTTGAAGACGTCCAACTAGATGCGGTGAGAACTGAAATGCAGCTTGACATTTTTAGTGTCCTGCCACTTGGCAAAACGACGACATCTCCGATATTCGTGGCTTCTTCTAGATCGAACCCGCATTGGGGGTTAACGAACGGTTCATTGGATCTCAAATCATCCGATTCCGTTATTTTTAGACGACGTAAAGTTTTGTTCAACTGAAATATTATGTTGTCGGTTTACAGTGCAAAACGTAATGTTATTACCATTTCTGTGAGGCAAGCAACGCCCAACGCAAGATTTTCAACCTCCGAATTGGTGCCGTGAGCACGTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAGAAGACGACTGTCTGAAG</pcr_primer_p1>
		<pcr_primer_p2>ACCAAAGTAAGGATTTCTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAGAGAAGACGACTGTCTGAAGCCGGCAATGACGAAGTCTGACAATGAAACACTCTTTCGAGGTAATTGAAGCAAAGGACACTCACTTGTGACGACTTCGAAGAAGGCATTTCCTAGTGGAGTGTATCCTCTATTGGATTCGCTAGAAGCGGAATATGCGGGAAAAAACGGATCTTTATCAGCAACCTGCAATGAGAATGGGATTAATAATTTTAATATAAAAATTAGAGATGAGAAATCCTTACTTTGGT</canonical_amplicon>
		<polymorphic_amplicon>GAGAGAAGACGACTGTCTGAAGCCGGCAATGACGAAGTCTGACAATGAAACACTCTTTCGAGGTAATTGAAGCAAAGGACACTCACTTGTGACGACTTCGAAGAAGGCWTTTCCTAGTGGAGTGTATCCTCTATTGGATTCGCTAGAAGCGGAATATGCGGGAAAAAACGGATCTTTATCAGCAACCTGCAATGAGAATGGGATTAATAATTTTAATATAAAAATTAGAGATGAGAAATCCTTACTTTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34525</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>98803</contig_pos>
        <strand>+</strand>
        <context>GAAGGCWTTT[C/T]CTAGTGGAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTAATTGAAGCAAAGGACACTCACTTGTGACGACTTCGAAGAAGGCATTT</left_flank>
        <right_flank>CTAGTGGAGTGTATCCTCTATTGGATTCGCTAGAAGCGGAATATGCGGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGATTGTTTATTTTTGTTTTCGAAGGACCTGATTTTTTGGAAGTGAGCAGTAGATTGAAGAAAAAACCAGTAAGCGAACCGGAAACCACGAACGAAACGCGTTGGTCCAATTCTATTCGAAGTTCAACATCACTCTGGAAAAATTTAAAAGCGGTGTGAACTGAGGTTTTGAAAAGTTACATTTGAGGAGCATAATTGCAAGCTTCTAATTGTGCTTTCAACTCTTCAGCCAATTTCGATGGATTTGTGCTTGTTTTTTTGGCGAGTTGCGATCGTTGGCGATCCCTAAACAAGTTATATAAATGATGTTAAGATGGAAGTTTTTAAACTCACAACAAGTTATCAATGACTTCTCTCACGAGTCGTGTTGTATAAGTTTGAAGAGGGAGAGAAGACGACTGTCTGAAGCCGGCAATGACGAAGTCTGACAATGAAACACTCTTTCGAGGTAATTGAAGCAAAGGACACTCACTTGTGACGACTTCGAAGAAGGCATTTCCTAGTGGAGTGTATCCTCTATTGGATTCGCTAGAAGCGGAATATGCGGGAAAAAACGGATCTTTATCAGCAACCTGCAATGAGAATGGGATTAATAATTTTAATATAAAAATTAGAGATGAGAAATCCTTACTTTGGTGAAAATGTGCCGGACTAAACTTTTCGCGTCCGTTTTATAATTTGAAGACGTCCAACTAGATGCGGTGAGAACTGAAATGCAGCTTGACATTTTTAGTGTCCTGCCACTTGGCAAAACGACGACATCTCCGATATTCGTGGCTTCTTCTAGATCGAACCCGCATTGGGGGTTAACGAACGGTTCATTGGATCTCAAATCATCCGATTCCGTTATTTTTAGACGACGTAAAGTTTTGTTCAACTGAAATATTATGTTGTCGGTTTACAGTGCAAAACGTAATGTTATTACCATTTCTGTGAGGCAAGCAACGCCCAACGCAAGATTTTCAACCTCCGAATTGGTGCCGTGAGCACGTGCAGCAA</canonical>
            <polymorphic>TCGATTGTTTATTTTTGTTTTCGAAGGACCTGATTTTTTGGAAGTGAGCAGTAGATTGAAGAAAAAACCAGTAAGCGAACCGGAAACCACGAACGAAACGCGTTGGTCCAATTCTATTCGAAGTTCAACATCACTCTGGAAAAATTTAAAAGCGGTGTGAACTGAGGTTTTGAAAAGTTACATTTGAGGAGCATAATTGCAAGCTTCTAATTGTGCTTTCAACTCTTCAGCCAATTTCGATGGATTTGTGCTTGTTTTTTTGGCGAGTTGCGATCGTTGGCGATCCCTAAACAAGTTATATAAATGATGTTAAGATGGAAGTTTTTAAACTCACAACAAGTTATCAATGACTTCTCTCACGAGTCGTGTTGTATAAGTTTGAAGAGGGAGAGAAGACGACTGTCTGAAGCCGGCAATGACGAAGTCTGACAATGAAACACTCTTTCGAGGTAATTGAAGCAAAGGACACTCACTTGTGACGACTTCGAAGAAGGCATTTYCTAGTGGAGTGTATCCTCTATTGGATTCGCTAGAAGCGGAATATGCGGGAAAAAACGGATCTTTATCAGCAACCTGCAATGAGAATGGGATTAATAATTTTAATATAAAAATTAGAGATGAGAAATCCTTACTTTGGTGAAAATGTGCCGGACTAAACTTTTCGCGTCCGTTTTATAATTTGAAGACGTCCAACTAGATGCGGTGAGAACTGAAATGCAGCTTGACATTTTTAGTGTCCTGCCACTTGGCAAAACGACGACATCTCCGATATTCGTGGCTTCTTCTAGATCGAACCCGCATTGGGGGTTAACGAACGGTTCATTGGATCTCAAATCATCCGATTCCGTTATTTTTAGACGACGTAAAGTTTTGTTCAACTGAAATATTATGTTGTCGGTTTACAGTGCAAAACGTAATGTTATTACCATTTCTGTGAGGCAAGCAACGCCCAACGCAAGATTTTCAACCTCCGAATTGGTGCCGTGAGCACGTGCAGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAGAAGACGACTGTCTGAAG</pcr_primer_p1>
		<pcr_primer_p2>ACCAAAGTAAGGATTTCTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAGAGAAGACGACTGTCTGAAGCCGGCAATGACGAAGTCTGACAATGAAACACTCTTTCGAGGTAATTGAAGCAAAGGACACTCACTTGTGACGACTTCGAAGAAGGCATTTCCTAGTGGAGTGTATCCTCTATTGGATTCGCTAGAAGCGGAATATGCGGGAAAAAACGGATCTTTATCAGCAACCTGCAATGAGAATGGGATTAATAATTTTAATATAAAAATTAGAGATGAGAAATCCTTACTTTGGT</canonical_amplicon>
		<polymorphic_amplicon>GAGAGAAGACGACTGTCTGAAGCCGGCAATGACGAAGTCTGACAATGAAACACTCTTTCGAGGTAATTGAAGCAAAGGACACTCACTTGTGACGACTTCGAAGAAGGCATTTYCTAGTGGAGTGTATCCTCTATTGGATTCGCTAGAAGCGGAATATGCGGGAAAAAACGGATCTTTATCAGCAACCTGCAATGAGAATGGGATTAATAATTTTAATATAAAAATTAGAGATGAGAAATCCTTACTTTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34526</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>100525</contig_pos>
        <strand>+</strand>
        <context>TGATATGATT[C/T]ACCGGTGAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCGTATCTACACAACATTTCCAAAATATTCCTTCCATGTTGATATGATT</left_flank>
        <right_flank>ACCGGTGAGAGTTTCGACCTTTCTTTTCAGAGAAGAAAAGCTGTTGTCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACAACCGACTGGAACAACACGAGCCACAGAAATTCTTTTCTCCGAGACCACCATTTTCTCCCAAATCTTCTGGAAAAAAGGACGAATTCTTAAGAGACGGTAAAAGGCCAAATTGGGGCAAGCAAAAAGAAGAAGGCGGAGAAAAATGGGCGAGCAGCTATCGCAACAGTGCGGCATCCCGTAATTGCAAGGCCCCGCATGGTTGTCAACTGTACCTCTTCCGGCCCATCAGAAACGTTATTTCAATTATTAATTCAATTATTAATTTCAATTATTAATTTATTAATAGAATTTTATGAAAATGGAAATTATTCAATTGTGAATAGGTACACCATTGACTGCTGTTATTAAAAGCGAGTTCTCAAAGTGTACATAACAACCAATTGAAGTAATTGTTGACGTCTTCAAAATGTGTCGCTTTCCGGACAATTTTCCAACTTTCACACCCTCGTATCTACACAACATTTCCAAAATATTCCTTCCATGTTGATATGATTTACCGGTGAGAGTTTCGACCTTTCTTTTCAGAGAAGAAAAGCTGTTGTCCGTTTCGATAATGTATTCTGCAAGAATATCGAGATCACCGTCTATCAGAGGAGCAGCGATAAAACGATAACAAAGTGACTGGCCATTGGTTTTCACAAAAAAAATATCACCCGTGCTATTAGTGTCCCAATATTCCGACTTCAGTGTTCCCAGCGGTAGAAACAACTGAGAGTATAACAATGAGCAGCCGTTTACAATTGAATCTTCTGGTTTCAGAGAGTTAATCACATTTCTACCATATGCTTTCTTTTTCTTGATATTAGGAACTAGTGAAAGGAAATCCCTGAATGACTCTGAATCATCTTGATCTACTCTAACCATCAACTCCCGCCTAACAGCATTATGAAGAAGAATTCTGGAAAAAAAATTTCATTACTTTCAACAGGCTTTTGTCATTGATACCTGGAACAAGCTGTCTCGCAGAATCCTCTTGTCATTTTTGACGAATAGCC</canonical>
            <polymorphic>CTACAACCGACTGGAACAACACGAGCCACAGAAATTCTTTTCTCCGAGACCACCATTTTCTCCCAAATCTTCTGGAAAAAAGGACGAATTCTTAAGAGACGGTAAAAGGCCAAATTGGGGCAAGCAAAAAGAAGAAGGCGGAGAAAAATGGGCGAGCAGCTATCGCAACAGTGCGGCATCCCGTAATTGCAAGGCCCCGCATGGTTGTCAACTGTACCTCTTCCGGCCCATCAGAAACGTTATTTCAATTATTAATTCAATTATTAATTTCAATTATTAATTTATTAATAGAATTTTATGAAAATGGAAATTATTCAATTGTGAATAGGTACACCATTGACTGCTGTTATTAAAAGCGAGTTCTCAAAGTGTACATAACAACCAATTGAAGTAATTGTTGACGTCTTCAAAATGTGTCGCTTTCCGGACAATTTTCCAACTTTCACACCCTCGTATCTACACAACATTTCCAAAATATTCCTTCCATGTTGATATGATTYACCGGTGAGAGTTTCGACCTTTCTTTTCAGAGAAGAAAAGCTGTTGTCCGTTTCGATAATGTATTCTGCAAGAATATCGAGATCACCGTCTATCAGAGGAGCAGCGATAAAACGATAACAAAGTGACTGGCCATTGGTTTTCACAAAAAAAATATCACCCGTGCTATTAGTGTCCCAATATTCCGACTTCAGTGTTCCCAGCGGTAGAAACAACTGAGAGTATAACAATGAGCAGCCGTTTACAATTGAATCTTCTGGTTTCAGAGAGTTAATCACATTTCTACCATATGCTTTCTTTTTCTTGATATTAGGAACTAGTGAAAGGAAATCCCTGAATGACTCTGAATCATCTTGATCTACTCTAACCATCAACTCCCGCCTAACAGCATTATGAAGAAGAATTCTGGAAAAAAAATTTCATTACTTTCAACAGGCTTTTGTCATTGATACCTGGAACAAGCTGTCTCGCAGAATCCTCTTGTCATTTTTGACGAATAGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCAATTGAAGTAATTGTTGAC</pcr_primer_p1>
		<pcr_primer_p2>GTCACTTTGTTATCGTTTTATCG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AACCAATTGAAGTAATTGTTGACGTCTTCAAAATGTGTCGCTTTCCGGACAATTTTCCAACTTTCACACCCTCGTATCTACACAACATTTCCAAAATATTCCTTCCATGTTGATATGATTTACCGGTGAGAGTTTCGACCTTTCTTTTCAGAGAAGAAAAGCTGTTGTCCGTTTCGATAATGTATTCTGCAAGAATATCGAGATCACCGTCTATCAGAGGAGCAGCGATAAAACGATAACAAAGTGAC</canonical_amplicon>
		<polymorphic_amplicon>AACCAATTGAAGTAATTGTTGACGTCTTCAAAATGTGTCGCTTTCCGGACAATTTTCCAACTTTCACACCCTCGTATCTACACAACATTTCCAAAATATTCCTTCCATGTTGATATGATTYACCGGTGAGAGTTTCGACCTTTCTTTTCAGAGAAGAAAAGCTGTTGTCCGTTTCGATAATGTATTCTGCAAGAATATCGAGATCACCGTCTATCAGAGGAGCAGCGATAAAACGATAACAAAGTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34527</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>100670</contig_pos>
        <strand>+</strand>
        <context>TGGTTTTCAC[C/T]AAAAAAATAT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAGGAGCAGCGATAAAACGATAACAAAGTGACTGGCCATTGGTTTTCAC</left_flank>
        <right_flank>AAAAAAATATCACCCGTGCTATTAGTGTCCCAATATTCCGACTTCAGTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGGGCGAGCAGCTATCGCAACAGTGCGGCATCCCGTAATTGCAAGGCCCCGCATGGTTGTCAACTGTACCTCTTCCGGCCCATCAGAAACGTTATTTCAATTATTAATTCAATTATTAATTTCAATTATTAATTTATTAATAGAATTTTATGAAAATGGAAATTATTCAATTGTGAATAGGTACACCATTGACTGCTGTTATTAAAAGCGAGTTCTCAAAGTGTACATAACAACCAATTGAAGTAATTGTTGACGTCTTCAAAATGTGTCGCTTTCCGGACAATTTTCCAACTTTCACACCCTCGTATCTACACAACATTTCCAAAATATTCCTTCCATGTTGATATGATTTACCGGTGAGAGTTTCGACCTTTCTTTTCAGAGAAGAAAAGCTGTTGTCCGTTTCGATAATGTATTCTGCAAGAATATCGAGATCACCGTCTATCAGAGGAGCAGCGATAAAACGATAACAAAGTGACTGGCCATTGGTTTTCACAAAAAAAATATCACCCGTGCTATTAGTGTCCCAATATTCCGACTTCAGTGTTCCCAGCGGTAGAAACAACTGAGAGTATAACAATGAGCAGCCGTTTACAATTGAATCTTCTGGTTTCAGAGAGTTAATCACATTTCTACCATATGCTTTCTTTTTCTTGATATTAGGAACTAGTGAAAGGAAATCCCTGAATGACTCTGAATCATCTTGATCTACTCTAACCATCAACTCCCGCCTAACAGCATTATGAAGAAGAATTCTGGAAAAAAAATTTCATTACTTTCAACAGGCTTTTGTCATTGATACCTGGAACAAGCTGTCTCGCAGAATCCTCTTGTCATTTTTGACGAATAGCCCAATAAACAGAACTGATAGAAAGACTCAAAGCTGTAAGTGGCAAGAGGAGCAACATTATTGAACATGCTGACGGCGTAGGGTAAATGGAAAAGTAGCTCCTGAATATGAATTAAAAACAAGCCTTATTGGTAGTCAGTCTTACAT</canonical>
            <polymorphic>AAATGGGCGAGCAGCTATCGCAACAGTGCGGCATCCCGTAATTGCAAGGCCCCGCATGGTTGTCAACTGTACCTCTTCCGGCCCATCAGAAACGTTATTTCAATTATTAATTCAATTATTAATTTCAATTATTAATTTATTAATAGAATTTTATGAAAATGGAAATTATTCAATTGTGAATAGGTACACCATTGACTGCTGTTATTAAAAGCGAGTTCTCAAAGTGTACATAACAACCAATTGAAGTAATTGTTGACGTCTTCAAAATGTGTCGCTTTCCGGACAATTTTCCAACTTTCACACCCTCGTATCTACACAACATTTCCAAAATATTCCTTCCATGTTGATATGATTTACCGGTGAGAGTTTCGACCTTTCTTTTCAGAGAAGAAAAGCTGTTGTCCGTTTCGATAATGTATTCTGCAAGAATATCGAGATCACCGTCTATCAGAGGAGCAGCGATAAAACGATAACAAAGTGACTGGCCATTGGTTTTCACYAAAAAAATATCACCCGTGCTATTAGTGTCCCAATATTCCGACTTCAGTGTTCCCAGCGGTAGAAACAACTGAGAGTATAACAATGAGCAGCCGTTTACAATTGAATCTTCTGGTTTCAGAGAGTTAATCACATTTCTACCATATGCTTTCTTTTTCTTGATATTAGGAACTAGTGAAAGGAAATCCCTGAATGACTCTGAATCATCTTGATCTACTCTAACCATCAACTCCCGCCTAACAGCATTATGAAGAAGAATTCTGGAAAAAAAATTTCATTACTTTCAACAGGCTTTTGTCATTGATACCTGGAACAAGCTGTCTCGCAGAATCCTCTTGTCATTTTTGACGAATAGCCCAATAAACAGAACTGATAGAAAGACTCAAAGCTGTAAGTGGCAAGAGGAGCAACATTATTGAACATGCTGACGGCGTAGGGTAAATGGAAAAGTAGCTCCTGAATATGAATTAAAAACAAGCCTTATTGGTAGTCAGTCTTACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGTTTCGATAATGTATTCTG</pcr_primer_p1>
		<pcr_primer_p2>GAAAGCATATGGTAGAAATGTGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCGTTTCGATAATGTATTCTGCAAGAATATCGAGATCACCGTCTATCAGAGGAGCAGCGATAAAACGATAACAAAGTGACTGGCCATTGGTTTTCACAAAAAAAATATCACCCGTGCTATTAGTGTCCCAATATTCCGACTTCAGTGTTCCCAGCGGTAGAAACAACTGAGAGTATAACAATGAGCAGCCGTTTACAATTGAATCTTCTGGTTTCAGAGAGTTAATCACATTTCTACCATATGCTTTC</canonical_amplicon>
		<polymorphic_amplicon>CCGTTTCGATAATGTATTCTGCAAGAATATCGAGATCACCGTCTATCAGAGGAGCAGCGATAAAACGATAACAAAGTGACTGGCCATTGGTTTTCACYAAAAAAATATCACCCGTGCTATTAGTGTCCCAATATTCCGACTTCAGTGTTCCCAGCGGTAGAAACAACTGAGAGTATAACAATGAGCAGCCGTTTACAATTGAATCTTCTGGTTTCAGAGAGTTAATCACATTTCTACCATATGCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34528</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>100683</contig_pos>
        <strand></strand>
        <context>AAAAATATCA[C/T]CCGTGCTATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAACGATAACAAAGTGACTGGCCATTGGTTTTCACAAAAAAAATATCA</left_flank>
        <right_flank>CCGTGCTATTAGTGTCCCAATATTCCGACTTCAGTGTTCCCAGCGGTAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTATCGCAACAGTGCGGCATCCCGTAATTGCAAGGCCCCGCATGGTTGTCAACTGTACCTCTTCCGGCCCATCAGAAACGTTATTTCAATTATTAATTCAATTATTAATTTCAATTATTAATTTATTAATAGAATTTTATGAAAATGGAAATTATTCAATTGTGAATAGGTACACCATTGACTGCTGTTATTAAAAGCGAGTTCTCAAAGTGTACATAACAACCAATTGAAGTAATTGTTGACGTCTTCAAAATGTGTCGCTTTCCGGACAATTTTCCAACTTTCACACCCTCGTATCTACACAACATTTCCAAAATATTCCTTCCATGTTGATATGATTTACCGGTGAGAGTTTCGACCTTTCTTTTCAGAGAAGAAAAGCTGTTGTCCGTTTCGATAATGTATTCTGCAAGAATATCGAGATCACCGTCTATCAGAGGAGCAGCGATAAAACGATAACAAAGTGACTGGCCATTGGTTTTCACAAAAAAAATATCACCCGTGCTATTAGTGTCCCAATATTCCGACTTCAGTGTTCCCAGCGGTAGAAACAACTGAGAGTATAACAATGAGCAGCCGTTTACAATTGAATCTTCTGGTTTCAGAGAGTTAATCACATTTCTACCATATGCTTTCTTTTTCTTGATATTAGGAACTAGTGAAAGGAAATCCCTGAATGACTCTGAATCATCTTGATCTACTCTAACCATCAACTCCCGCCTAACAGCATTATGAAGAAGAATTCTGGAAAAAAAATTTCATTACTTTCAACAGGCTTTTGTCATTGATACCTGGAACAAGCTGTCTCGCAGAATCCTCTTGTCATTTTTGACGAATAGCCCAATAAACAGAACTGATAGAAAGACTCAAAGCTGTAAGTGGCAAGAGGAGCAACATTATTGAACATGCTGACGGCGTAGGGTAAATGGAAAAGTAGCTCCTGAATATGAATTAAAAACAAGCCTTATTGGTAGTCAGTCTTACATGAGTTTTACATGG</canonical>
            <polymorphic>GCTATCGCAACAGTGCGGCATCCCGTAATTGCAAGGCCCCGCATGGTTGTCAACTGTACCTCTTCCGGCCCATCAGAAACGTTATTTCAATTATTAATTCAATTATTAATTTCAATTATTAATTTATTAATAGAATTTTATGAAAATGGAAATTATTCAATTGTGAATAGGTACACCATTGACTGCTGTTATTAAAAGCGAGTTCTCAAAGTGTACATAACAACCAATTGAAGTAATTGTTGACGTCTTCAAAATGTGTCGCTTTCCGGACAATTTTCCAACTTTCACACCCTCGTATCTACACAACATTTCCAAAATATTCCTTCCATGTTGATATGATTTACCGGTGAGAGTTTCGACCTTTCTTTTCAGAGAAGAAAAGCTGTTGTCCGTTTCGATAATGTATTCTGCAAGAATATCGAGATCACCGTCTATCAGAGGAGCAGCGATAAAACGATAACAAAGTGACTGGCCATTGGTTTTCACAAAAAAAATATCAYCCGTGCTATTAGTGTCCCAATATTCCGACTTCAGTGTTCCCAGCGGTAGAAACAACTGAGAGTATAACAATGAGCAGCCGTTTACAATTGAATCTTCTGGTTTCAGAGAGTTAATCACATTTCTACCATATGCTTTCTTTTTCTTGATATTAGGAACTAGTGAAAGGAAATCCCTGAATGACTCTGAATCATCTTGATCTACTCTAACCATCAACTCCCGCCTAACAGCATTATGAAGAAGAATTCTGGAAAAAAAATTTCATTACTTTCAACAGGCTTTTGTCATTGATACCTGGAACAAGCTGTCTCGCAGAATCCTCTTGTCATTTTTGACGAATAGCCCAATAAACAGAACTGATAGAAAGACTCAAAGCTGTAAGTGGCAAGAGGAGCAACATTATTGAACATGCTGACGGCGTAGGGTAAATGGAAAAGTAGCTCCTGAATATGAATTAAAAACAAGCCTTATTGGTAGTCAGTCTTACATGAGTTTTACATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>220 150 118 81 78 46 45 45 40 38 29 22 18 15 14 14 10 9 6 2</canonical_bands>
                <polymorphic_bands>220 150 118 81 78 46 45 45 40 38 29 22 20 18 15 14 10 9 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGTTTCGATAATGTATTCTG</pcr_primer_p1>
		<pcr_primer_p2>GAAAGCATATGGTAGAAATGTGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCGTTTCGATAATGTATTCTGCAAGAATATCGAGATCACCGTCTATCAGAGGAGCAGCGATAAAACGATAACAAAGTGACTGGCCATTGGTTTTCACAAAAAAAATATCACCCGTGCTATTAGTGTCCCAATATTCCGACTTCAGTGTTCCCAGCGGTAGAAACAACTGAGAGTATAACAATGAGCAGCCGTTTACAATTGAATCTTCTGGTTTCAGAGAGTTAATCACATTTCTACCATATGCTTTC</canonical_amplicon>
		<polymorphic_amplicon>CCGTTTCGATAATGTATTCTGCAAGAATATCGAGATCACCGTCTATCAGAGGAGCAGCGATAAAACGATAACAAAGTGACTGGCCATTGGTTTTCACAAAAAAAATATCAYCCGTGCTATTAGTGTCCCAATATTCCGACTTCAGTGTTCCCAGCGGTAGAAACAACTGAGAGTATAACAATGAGCAGCCGTTTACAATTGAATCTTCTGGTTTCAGAGAGTTAATCACATTTCTACCATATGCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34529</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>100939</contig_pos>
        <strand>+</strand>
        <context>CTGGAAAAAA[A/T]ATTTCATTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACCATCAACTCCCGCCTAACAGCATTATGAAGAAGAATTCTGGAAAAAA</left_flank>
        <right_flank>ATTTCATTACTTTCAACAGGCTTTTGTCATTGATACCTGGAACAAGCTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTCGCTTTCCGGACAATTTTCCAACTTTCACACCCTCGTATCTACACAACATTTCCAAAATATTCCTTCCATGTTGATATGATTTACCGGTGAGAGTTTCGACCTTTCTTTTCAGAGAAGAAAAGCTGTTGTCCGTTTCGATAATGTATTCTGCAAGAATATCGAGATCACCGTCTATCAGAGGAGCAGCGATAAAACGATAACAAAGTGACTGGCCATTGGTTTTCACAAAAAAAATATCACCCGTGCTATTAGTGTCCCAATATTCCGACTTCAGTGTTCCCAGCGGTAGAAACAACTGAGAGTATAACAATGAGCAGCCGTTTACAATTGAATCTTCTGGTTTCAGAGAGTTAATCACATTTCTACCATATGCTTTCTTTTTCTTGATATTAGGAACTAGTGAAAGGAAATCCCTGAATGACTCTGAATCATCTTGATCTACTCTAACCATCAACTCCCGCCTAACAGCATTATGAAGAAGAATTCTGGAAAAAAAATTTCATTACTTTCAACAGGCTTTTGTCATTGATACCTGGAACAAGCTGTCTCGCAGAATCCTCTTGTCATTTTTGACGAATAGCCCAATAAACAGAACTGATAGAAAGACTCAAAGCTGTAAGTGGCAAGAGGAGCAACATTATTGAACATGCTGACGGCGTAGGGTAAATGGAAAAGTAGCTCCTGAATATGAATTAAAAACAAGCCTTATTGGTAGTCAGTCTTACATGAGTTTTACATGGCATGTACCTTTCACTTTCAGAGAGAAGCAATTTGGAAACGGAGAAACACAGTTTTTCATAAAATTGGTCTATGTTTGGTCCACCAGTATACATTTTGTTGATAATTAATGACAAACCAATGATGACAAGTCTTGCCTTTGTTCCCAGAGTCTCAGAATTCAAAACAGCGAGAAAAAGCTGGAGACGAAAGAACTGTAATTAACAAGATGAAAATCGCAGTTATACATTTACCGATTACATTAGTTTTGTCTGTTCC</canonical>
            <polymorphic>TGTCGCTTTCCGGACAATTTTCCAACTTTCACACCCTCGTATCTACACAACATTTCCAAAATATTCCTTCCATGTTGATATGATTTACCGGTGAGAGTTTCGACCTTTCTTTTCAGAGAAGAAAAGCTGTTGTCCGTTTCGATAATGTATTCTGCAAGAATATCGAGATCACCGTCTATCAGAGGAGCAGCGATAAAACGATAACAAAGTGACTGGCCATTGGTTTTCACAAAAAAAATATCACCCGTGCTATTAGTGTCCCAATATTCCGACTTCAGTGTTCCCAGCGGTAGAAACAACTGAGAGTATAACAATGAGCAGCCGTTTACAATTGAATCTTCTGGTTTCAGAGAGTTAATCACATTTCTACCATATGCTTTCTTTTTCTTGATATTAGGAACTAGTGAAAGGAAATCCCTGAATGACTCTGAATCATCTTGATCTACTCTAACCATCAACTCCCGCCTAACAGCATTATGAAGAAGAATTCTGGAAAAAAWATTTCATTACTTTCAACAGGCTTTTGTCATTGATACCTGGAACAAGCTGTCTCGCAGAATCCTCTTGTCATTTTTGACGAATAGCCCAATAAACAGAACTGATAGAAAGACTCAAAGCTGTAAGTGGCAAGAGGAGCAACATTATTGAACATGCTGACGGCGTAGGGTAAATGGAAAAGTAGCTCCTGAATATGAATTAAAAACAAGCCTTATTGGTAGTCAGTCTTACATGAGTTTTACATGGCATGTACCTTTCACTTTCAGAGAGAAGCAATTTGGAAACGGAGAAACACAGTTTTTCATAAAATTGGTCTATGTTTGGTCCACCAGTATACATTTTGTTGATAATTAATGACAAACCAATGATGACAAGTCTTGCCTTTGTTCCCAGAGTCTCAGAATTCAAAACAGCGAGAAAAAGCTGGAGACGAAAGAACTGTAATTAACAAGATGAAAATCGCAGTTATACATTTACCGATTACATTAGTTTTGTCTGTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>485 400 101 14</canonical_bands>
                <polymorphic_bands>485 414 101</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>314 195 156 78 60 53 41 41 33 15 14</canonical_bands>
                <polymorphic_bands>314 209 156 78 60 53 41 41 33 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATCTTGATCTACTCTAACCATCA</pcr_primer_p1>
		<pcr_primer_p2>AGCTACTTTTCCATTTACCCTAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CATCTTGATCTACTCTAACCATCAACTCCCGCCTAACAGCATTATGAAGAAGAATTCTGGAAAAAAAATTTCATTACTTTCAACAGGCTTTTGTCATTGATACCTGGAACAAGCTGTCTCGCAGAATCCTCTTGTCATTTTTGACGAATAGCCCAATAAACAGAACTGATAGAAAGACTCAAAGCTGTAAGTGGCAAGAGGAGCAACATTATTGAACATGCTGACGGCGTAGGGTAAATGGAAAAGTAGCT</canonical_amplicon>
		<polymorphic_amplicon>CATCTTGATCTACTCTAACCATCAACTCCCGCCTAACAGCATTATGAAGAAGAATTCTGGAAAAAAWATTTCATTACTTTCAACAGGCTTTTGTCATTGATACCTGGAACAAGCTGTCTCGCAGAATCCTCTTGTCATTTTTGACGAATAGCCCAATAAACAGAACTGATAGAAAGACTCAAAGCTGTAAGTGGCAAGAGGAGCAACATTATTGAACATGCTGACGGCGTAGGGTAAATGGAAAAGTAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34530</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>150517</contig_pos>
        <strand></strand>
        <context>tgattccaaa[T/C]tgtctaaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAATTCTTGAATATTGCTCGGTCATATTTTCCCCCCATCCTGATTCCAAA</left_flank>
        <right_flank>TGTCTAAAAAACTTGAGTTCCCCCTTCGTTTCTTCTCCAAAACTATTTGT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTGAAACTCAACACAAATACTGCCCGGAGTTTCTCTCAATTCTATTAATTAATAAGAAAAACTTTGTGATCCCTCATTGAATCACTACCGTTTCGACTTTTAAAAAATTCTCCAGTACTTTCTTTGTCTCCGGGCTGTCCGAGAATTTTTTGTAAAAAATCAGAAATTCTTGAACTTTTACCCACAACGACTTGTCTCCGGCTTGGCCCAAACATCTCCGGCTTCGCCCAAACAACCCCTCTCATCCCTATGCAATTGATGGCCTCTCCATTACATCATCCTCCCCCATCCGTGATCTGGGTTTATTAACAGATTCCAACCTTAAATTCTCAGATCATATTAATCGTGTCTCCTCCCTTGCCCTTCTCCGGTGTAAACAACTCCTCAAATCCTTTAACTCCAAATCCCCCGAATTCTACCTCGCCCTTTTCAATTGCTACGTCTTGCCAATTCTTGAATATTGCTCGGTCATATTTTCCCCCCATCCTGATTCCAAATTGTCTAAAAAACTTGAGTTCCCCCTTCGTTTCTTCTCCAAAACTATTTGTCAACGTTGTAATATACCATTTTCGTCTACCCCCGGTGCCTCTTATCCTTCCAGACTCCAAATTCTCAATTTTTTCTCTTTGCGTCATAGACGCCTTAAATCTCAGTTAATGCTTCTGTACAAAATAATCAACCTCACTTCTTACATTCCCCATCCTGAATCTCATTTCCGCTTATCTAACTCTGCCCGTCGCCCCATGACTTTAATTTGCCTCAATCCCCATATTAATGATTTCTTTGCATCCACCATCCCATTTTGGAATGCCATAACTGCCAATGTACCCCAATTCCTCACCCCCGTCCCAATTTGAAAATCTCCTTGATTCTTCTATTTCTCGCTACTAGCTATTATCCTTATTTTTAACACATGTATTTTACTGTATATAATTCCTCCCTTTTCCATTATTTTTCTCTTCTTAAAGGTGGGGGGACCGGAGATTTTTCGTAGTTTT</canonical>
            <polymorphic>TACTGAAACTCAACACAAATACTGCCCGGAGTTTCTCTCAATTCTATTAATTAATAAGAAAAACTTTGTGATCCCTCATTGAATCACTACCGTTTCGACTTTTAAAAAATTCTCCAGTACTTTCTTTGTCTCCGGGCTGTCCGAGAATTTTTTGTAAAAAATCAGAAATTCTTGAACTTTTACCCACAACGACTTGTCTCCGGCTTGGCCCAAACATCTCCGGCTTCGCCCAAACAACCCCTCTCATCCCTATGCAATTGATGGCCTCTCCATTACATCATCCTCCCCCATCCGTGATCTGGGTTTATTAACAGATTCCAACCTTAAATTCTCAGATCATATTAATCGTGTCTCCTCCCTTGCCCTTCTCCGGTGTAAACAACTCCTCAAATCCTTTAACTCCAAATCCCCCGAATTCTACCTCGCCCTTTTCAATTGCTACGTCTTGCCAATTCTTGAATATTGCTCGGTCATATTTTCCCCCCATCCTGATTCCAAAYTGTCTAAAAAACTTGAGTTCCCCCTTCGTTTCTTCTCCAAAACTATTTGTCAACGTTGTAATATACCATTTTCGTCTACCCCCGGTGCCTCTTATCCTTCCAGACTCCAAATTCTCAATTTTTTCTCTTTGCGTCATAGACGCCTTAAATCTCAGTTAATGCTTCTGTACAAAATAATCAACCTCACTTCTTACATTCCCCATCCTGAATCTCATTTCCGCTTATCTAACTCTGCCCGTCGCCCCATGACTTTAATTTGCCTCAATCCCCATATTAATGATTTCTTTGCATCCACCATCCCATTTTGGAATGCCATAACTGCCAATGTACCCCAATTCCTCACCCCCGTCCCAATTTGAAAATCTCCTTGATTCTTCTATTTCTCGCTACTAGCTATTATCCTTATTTTTAACACATGTATTTTACTGTATATAATTCCTCCCTTTTCCATTATTTTTCTCTTCTTAAAGGTGGGGGGACCGGAGATTTTTCGTAGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>137 112 89 87 81 80 71 67 59 47 39 38 21 20 19 17 9 7</canonical_bands>
                <polymorphic_bands>159 137 89 87 81 80 71 67 59 39 38 21 20 19 17 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACCCACAACGACTTGTCTC</pcr_primer_p1>
		<pcr_primer_p2>GAATGCATACTCTAGCTACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>842</pcr_amplicon_size>
		<canonical_amplicon>TACCCACAACGACTTGTCTCCGGCTTGGCCCAAACATCTCCGGCTTCGCCCAAACAACCCCTCTCATCCCTATGCAATTGATGGCCTCTCCATTACATCATCCTCCCCCATCCGTGATCTGGGTTTATTAACAGATTCCAACCTTAAATTCTCAGATCATATTAATCGTGTCTCCTCCCTTGCCCTTCTCCGGTGTAAACAACTCCTCAAATCCTTTAACTCCAAATCCCCCGAATTCTACCTCGCCCTTTTCAATTGCTACGTCTTGCCAATTCTTGAATATTGCTCGGTCATATTTTCCCCCCATCCTGATTCCAAATTGTCTAAAAAACTTGAGTTCCCC</canonical_amplicon>
		<polymorphic_amplicon>TACCCACAACGACTTGTCTCCGGCTTGGCCCAAACATCTCCGGCTTCGCCCAAACAACCCCTCTCATCCCTATGCAATTGATGGCCTCTCCATTACATCATCCTCCCCCATCCGTGATCTGGGTTTATTAACAGATTCCAACCTTAAATTCTCAGATCATATTAATCGTGTCTCCTCCCTTGCCCTTCTCCGGTGTAAACAACTCCTCAAATCCTTTAACTCCAAATCCCCCGAATTCTACCTCGCCCTTTTCAATTGCTACGTCTTGCCAATTCTTGAATATTGCTCGGTCATATTTTCCCCCCATCCTGATTCCAAAYTGTCTAAAAAACTTGAGTTCCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34531</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>156038</contig_pos>
        <strand></strand>
        <context>TTGATCTATT[C/T]ATTTGATTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGTTTGAAAATGATTTTTCTTCTAATTTTCGCTTTGTTTTTGATCTATT</left_flank>
        <right_flank>ATTTGATTTATTCTATTGGAAAAGAAGGAATTTGCCGCCAGGTAAGGCTT</right_flank>
        <qual_score>46</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAATGTACAAATATTGCCAATGAGGTTAGGCACACTAAAAAATTACTGTTTCAAAAAACAAAAATTTTCAGAACATTTTTTAAAAAAAATTATTTCGTTTTAAGTCTTTCATACCATACATTGCCGCACCGAATAGAATTTTTTGAATTGTTGTTTCGAATCCAATCATTTTCAATTATTTTTAAATTTTAGCTAAAATGTTTCATTTTCAGCCAAGAATTTCCAGCTTAAACCACCTAAATCGGAATTTCCAATTTTTCAAAAGTTCACGTTTTTCCAATTTTTGGTTTTTTGTCGAAACGAACAAACAGAGAAGAGGATCATCACATTTTTTTGTTCTGTTTCTCTAACCACTCTCTCATCTTTCCATACTATCTCTTCACTTTACTCTAGTCTCTGGTTGATTGATCTTGACATAGATATCCGTTTTTCTCCCTCCAATTTTTTTCAGTTTGAAAATGATTTTTCTTCTAATTTTCGCTTTGTTTTTGATCTATTCATTTGATTTATTCTATTGGAAAAGAAGGAATTTGCCGCCAGGTAAGGCTTTGAGAATGAAAATGACTGAATACAGCCAACTTTGAGCCGGTATATCTCAACTTTTGTGGTAGATACCGAAAAGTGGTAAACTAGTAAAATATATACCATAATATCAGCAATATTCTATCAGTTGACCACTGTTCGATATTTCTTACAGTAATCAGAGATATATGGGTTCAAAGTCTACTGCTTGGATGGCCCCCTGTTAGAGTATTTAAGGTAATTTTCTTTTTTTAAGGTCCACTTCCCCTCCCAATAATTGGAAATTTGTATCTGATGACAGACGACGTCAAACCGGGCTATAAAATGTATCAGAAGTTGAAGTGAGTTTTTCGAAAATTTATAAACTTGAACTCGAAAATCTGAAAGCTGACACTTTTGTTGATTTAAGAGACTACATATATTTTGAGCCCAATTATCACAGTTCCCGTAAGAGATATCAAAAATCCGTAAACTACA</canonical>
            <polymorphic>CCAATGTACAAATATTGCCAATGAGGTTAGGCACACTAAAAAATTACTGTTTCAAAAAACAAAAATTTTCAGAACATTTTTTAAAAAAAATTATTTCGTTTTAAGTCTTTCATACCATACATTGCCGCACCGAATAGAATTTTTTGAATTGTTGTTTCGAATCCAATCATTTTCAATTATTTTTAAATTTTAGCTAAAATGTTTCATTTTCAGCCAAGAATTTCCAGCTTAAACCACCTAAATCGGAATTTCCAATTTTTCAAAAGTTCACGTTTTTCCAATTTTTGGTTTTTTGTCGAAACGAACAAACAGAGAAGAGGATCATCACATTTTTTTGTTCTGTTTCTCTAACCACTCTCTCATCTTTCCATACTATCTCTTCACTTTACTCTAGTCTCTGGTTGATTGATCTTGACATAGATATCCGTTTTTCTCCCTCCAATTTTTTTCAGTTTGAAAATGATTTTTCTTCTAATTTTCGCTTTGTTTTTGATCTATTYATTTGATTTATTCTATTGGAAAAGAAGGAATTTGCCGCCAGGTAAGGCTTTGAGAATGAAAATGACTGAATACAGCCAACTTTGAGCCGGTATATCTCAACTTTTGTGGTAGATACCGAAAAGTGGTAAACTAGTAAAATATATACCATAATATCAGCAATATTCTATCAGTTGACCACTGTTCGATATTTCTTACAGTAATCAGAGATATATGGGTTCAAAGTCTACTGCTTGGATGGCCCCCTGTTAGAGTATTTAAGGTAATTTTCTTTTTTTAAGGTCCACTTCCCCTCCCAATAATTGGAAATTTGTATCTGATGACAGACGACGTCAAACCGGGCTATAAAATGTATCAGAAGTTGAAGTGAGTTTTTCGAAAATTTATAAACTTGAACTCGAAAATCTGAAAGCTGACACTTTTGTTGATTTAAGAGACTACATATATTTTGAGCCCAATTATCACAGTTCCCGTAAGAGATATCAAAAATCCGTAAACTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGTTCTGTTTCTCTAACCAC</pcr_primer_p1>
		<pcr_primer_p2>GCTGTATTCAGTCATTTTCATTC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTTTGTTCTGTTTCTCTAACCACTCTCTCATCTTTCCATACTATCTCTTCACTTTACTCTAGTCTCTGGTTGATTGATCTTGACATAGATATCCGTTTTTCTCCCTCCAATTTTTTTCAGTTTGAAAATGATTTTTCTTCTAATTTTCGCTTTGTTTTTGATCTATTCATTTGATTTATTCTATTGGAAAAGAAGGAATTTGCCGCCAGGTAAGGCTTTGAGAATGAAAATGACTGAATACAGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGTTCTGTTTCTCTAACCACTCTCTCATCTTTCCATACTATCTCTTCACTTTACTCTAGTCTCTGGTTGATTGATCTTGACATAGATATCCGTTTTTCTCCCTCCAATTTTTTTCAGTTTGAAAATGATTTTTCTTCTAATTTTCGCTTTGTTTTTGATCTATTYATTTGATTTATTCTATTGGAAAAGAAGGAATTTGCCGCCAGGTAAGGCTTTGAGAATGAAAATGACTGAATACAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34532</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>160938</contig_pos>
        <strand></strand>
        <context>AATCTGGAAT[T/C]TGGAATCTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAAT</left_flank>
        <right_flank>TGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAAATAACCGCCGAGCCAATCGGAGCACTCCTTATCATGTATCCGTGGATTGGAGATTTGCCATTTTTGGGAAAATATAAGAGAAGTGAGCGACAATTTACTGGGATAGTGAAATCCTCAAACTCAGAGAACGTTCGGAATGTTTTTTGAAACAAAAATAAATCACTGTTTCAAATTTGATTGCTTTCCTAGAGAAATACACAGCCTGAATGACAACATTTTTGGTACAGAAAAATGCAGATTTTTTGAAACAGTAATTTTTGGTTTCGAAATCTGGAATCTGGAATCTGGAATTTGGAATCTGGAATTTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATTTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCCAAAAAATATCATGTTCAGTCGTCACGGATAGTTGGTCGGGTCTTCTGAAAATGTTCCGAAAACAAGCCGAGGAGAAATTGGCAGTGATTGATTATGATTCTGATGACTATTCGGATTATGTGGAAGCATTTTTGAAGGAGAGAAAGAAACATGAAAATGAGGAAGGGTTCGGAGGATTTGAGTGAGTTTTTTAAAAGCGATAACGTTCAGATAACGAGATAATTGACATTGTTTAATAACTCAAATTAGTTTGATTATTCGCAAATCAAATTTAGATTGGGAACACTGAGAATGTATAACTGGAAAAACATTGATTTTTTGAAACAGTAAAAATGACTACGGTACTCACAACAGAGCAAATATAGCTGTAACAAAGAATGATGGAAACCATTGAGAATTTGGAAAATGCACTAACTAGGGAGGCCCCAA</canonical>
            <polymorphic>TCAAAATAACCGCCGAGCCAATCGGAGCACTCCTTATCATGTATCCGTGGATTGGAGATTTGCCATTTTTGGGAAAATATAAGAGAAGTGAGCGACAATTTACTGGGATAGTGAAATCCTCAAACTCAGAGAACGTTCGGAATGTTTTTTGAAACAAAAATAAATCACTGTTTCAAATTTGATTGCTTTCCTAGAGAAATACACAGCCTGAATGACAACATTTTTGGTACAGAAAAATGCAGATTTTTTGAAACAGTAATTTTTGGTTTCGAAATCTGGAATCTGGAATCTGGAATYTGGAATCTGGAATTTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATTTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCCAAAAAATATCATGTTCAGTCGTCACGGATAGTTGGTCGGGTCTTCTGAAAATGTTCCGAAAACAAGCCGAGGAGAAATTGGCAGTGATTGATTATGATTCTGATGACTATTCGGATTATGTGGAAGCATTTTTGAAGGAGAGAAAGAAACATGAAAATGAGGAAGGGTTCGGAGGATTTGAGTGAGTTTTTTAAAAGCGATAACGTTCAGATAACGAGATAATTGACATTGTTTAATAACTCAAATTAGTTTGATTATTCGCAAATCAAATTTAGATTGGGAACACTGAGAATGTATAACTGGAAAAACATTGATTTTTTGAAACAGTAAAAATGACTACGGTACTCACAACAGAGCAAATATAGCTGTAACAAAGAATGATGGAAACCATTGAGAATTTGGAAAATGCACTAACTAGGGAGGCCCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>343 189 175 127 118 34 14</canonical_bands>
                <polymorphic_bands>343 189 175 132 127 34</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>189 150 145 127 96 82 79 36 34 25 23 14</canonical_bands>
                <polymorphic_bands>189 150 145 127 96 82 79 50 34 25 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATCTGGAATCTGGAATCTG</pcr_primer_p1>
		<pcr_primer_p2>CAGAATCATAATCAATCACTGC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATTTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCCAAAAAATATCATGTTCAGTCGTCACGGATAGTTGGTCGGGTCTTCTGAAAATGTTCCGAAAACAAGCCGAGGAGAAATTGGCAGTGATTGATTATGATTCTG</canonical_amplicon>
		<polymorphic_amplicon>GAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATTTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCCAAAAAATATCATGTTCAGTCGTCACGGATAGTTGGTCGGGTCTTCTGAAAATGTTCCGAAAACAAGCCGAGGAGAAATTGGCAGTGATTGATTATGATTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34533</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>161327</contig_pos>
        <strand>+</strand>
        <context>ACATTGATTW[A/T]TTGAAACAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATTTAGATTGGGAACACTGAGAATGTATAACTGGAAAAACATTGATTT</left_flank>
        <right_flank>TTGAAACAGTAAAAATGACTACGGTACTCACAACAGAGCAAATATAGCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATTTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCCAAAAAATATCATGTTCAGTCGTCACGGATAGTTGGTCGGGTCTTCTGAAAATGTTCCGAAAACAAGCCGAGGAGAAATTGGCAGTGATTGATTATGATTCTGATGACTATTCGGATTATGTGGAAGCATTTTTGAAGGAGAGAAAGAAACATGAAAATGAGGAAGGGTTCGGAGGATTTGAGTGAGTTTTTTAAAAGCGATAACGTTCAGATAACGAGATAATTGACATTGTTTAATAACTCAAATTAGTTTGATTATTCGCAAATCAAATTTAGATTGGGAACACTGAGAATGTATAACTGGAAAAACATTGATTTTTTGAAACAGTAAAAATGACTACGGTACTCACAACAGAGCAAATATAGCTGTAACAAAGAATGATGGAAACCATTGAGAATTTGGAAAATGCACTAACTAGGGAGGCCCCAACTCGGGTGTGGCAAGGTGACCTATATCATCTGAAAGCTGACATTTTCCTGATTCCAAATCTGTTTTCAAAAAGTGCATTGTCGCGGTAGTTTTCGAGGAAATTGTGTCAAAAGTTTCGGATAATGATGTGGATTTTTAATCTCATTTTCCTTCCTCACGTATATAAGTTTTGAAGTGTTGAAAGAATGCGGAAGCGAATGCGGAATTGTTCGGTTTTTGCGGTGACTGTATCTGAATTGTAGAAATGGACATAGGTTAACGAATCTCGTGAAACAATTTTTTTCACTGATTCTCTTTGTTTGGAACTAATTCTAGCACATTACATTTTTTTTCGAAAATTGAAAAAAAAATGACAAGGGGGTACCCCATGGCGATTTTTTCAAAATTAA</canonical>
            <polymorphic>GGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATTTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCTGGAATCCAAAAAATATCATGTTCAGTCGTCACGGATAGTTGGTCGGGTCTTCTGAAAATGTTCCGAAAACAAGCCGAGGAGAAATTGGCAGTGATTGATTATGATTCTGATGACTATTCGGATTATGTGGAAGCATTTTTGAAGGAGAGAAAGAAACATGAAAATGAGGAAGGGTTCGGAGGATTTGAGTGAGTTTTTTAAAAGCGATAACGTTCAGATAACGAGATAATTGACATTGTTTAATAACTCAAATTAGTTTGATTATTCGCAAATCAAATTTAGATTGGGAACACTGAGAATGTATAACTGGAAAAACATTGATTTWTTGAAACAGTAAAAATGACTACGGTACTCACAACAGAGCAAATATAGCTGTAACAAAGAATGATGGAAACCATTGAGAATTTGGAAAATGCACTAACTAGGGAGGCCCCAACTCGGGTGTGGCAAGGTGACCTATATCATCTGAAAGCTGACATTTTCCTGATTCCAAATCTGTTTTCAAAAAGTGCATTGTCGCGGTAGTTTTCGAGGAAATTGTGTCAAAAGTTTCGGATAATGATGTGGATTTTTAATCTCATTTTCCTTCCTCACGTATATAAGTTTTGAAGTGTTGAAAGAATGCGGAAGCGAATGCGGAATTGTTCGGTTTTTGCGGTGACTGTATCTGAATTGTAGAAATGGACATAGGTTAACGAATCTCGTGAAACAATTTTTTTCACTGATTCTCTTTGTTTGGAACTAATTCTAGCACATTACATTTTTTTTCGAAAATTGAAAAAAAAATGACAAGGGGGTACCCCATGGCGATTTTTTCAAAATTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTGAAGGAGAGAAAGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTGTTACAGCTATATTTGCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTGAAGGAGAGAAAGAAACATGAAAATGAGGAAGGGTTCGGAGGATTTGAGTGAGTTTTTTAAAAGCGATAACGTTCAGATAACGAGATAATTGACATTGTTTAATAACTCAAATTAGTTTGATTATTCGCAAATCAAATTTAGATTGGGAACACTGAGAATGTATAACTGGAAAAACATTGATTTTTTGAAACAGTAAAAATGACTACGGTACTCACAACAGAGCAAATATAGCTGTAACAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTGAAGGAGAGAAAGAAACATGAAAATGAGGAAGGGTTCGGAGGATTTGAGTGAGTTTTTTAAAAGCGATAACGTTCAGATAACGAGATAATTGACATTGTTTAATAACTCAAATTAGTTTGATTATTCGCAAATCAAATTTAGATTGGGAACACTGAGAATGTATAACTGGAAAAACATTGATTTWTTGAAACAGTAAAAATGACTACGGTACTCACAACAGAGCAAATATAGCTGTAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34534</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>166402</contig_pos>
        <strand>+</strand>
        <context>CTGGAAACTT[C/G]GGTTTCAGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCTCTGAAACAGAATATTTGATTTTTTTAAATTGAGAAAACTGGAAACTT</left_flank>
        <right_flank>GGTTTCAGATAAATTTTATTATTGCCTGGTCATTCACTTCGCTTGTTAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATAAAATCCCCCATTCATCGATTTCCTACTTTTCAAAATTTTCCATATTTTCCAGGAGAACTACAATTGCTTTTTAAAGAGCACATTACATTTAAACTTAAAAAAAAAAAGATTTCATCATTACTAATAACATTCACCAGATTCTGTATGTGCGTATGTATGTAGTGCACCTTATCACCCATTGAACGTTAACCGATCAAGCTGAAACCTGGATAGGTAGATCAGAATTGTGTCTTAGTTGATGCCCGAACTTTTGGTTTTTCAAAATTTTGATTTTGAAGTCTTCTGGAGACGTTCCTTGGTTTCACCACACTAAAGGGTGGTGGGCAGAAAGGTCGATGGTGGAGGGCGACCGGAGGCCAGGAGGTTCAGCCCCGAAGGGGCGTAAACCGACTGGTTATAAATCAATCATAATAATCAGATTATAGAGCTATTAAAAATAAGGATCCTCTGAAACAGAATATTTGATTTTTTTAAATTGAGAAAACTGGAAACTTGGGTTTCAGATAAATTTTATTATTGCCTGGTCATTCACTTCGCTTGTTAATTAGACATTAACGAACCAATCTTGAACAAATTGGTTCTAAAAAAAGAAAATTTATGAAACTGTAAAATTTTTGAATACCGTATCTTTTACAGGAAATGAGATAAATTGGCTAAAATGACGGTTCAGGTGCCCTTCTATTAGAAGGTTTACGGTGAACAGTAAATACGGCAAATACTGCCGAGACACTAAAAAAACTAAAAGAGTACAATTTTTGTAATCTTAGAAACAGAAAAAATTCGAAGCTTGAGATTTTTTCCATTTTTTCCCCCTTTACTTTTTTTCCAACCCTCAAACTAAAAAATAGATTCCCCAGAAAAAAATTTGCTGTCCTCTTCTCCTTCCTTATCTTCTTTTCTCCTCTTCTGATCATCATCACATTTAATTGCACGATTTAATTACCATGACGACGTCTTCTTCTTCTTCCTCTTCTTCCGACGACGACGAAATCGTT</canonical>
            <polymorphic>TTATAAAATCCCCCATTCATCGATTTCCTACTTTTCAAAATTTTCCATATTTTCCAGGAGAACTACAATTGCTTTTTAAAGAGCACATTACATTTAAACTTAAAAAAAAAAAGATTTCATCATTACTAATAACATTCACCAGATTCTGTATGTGCGTATGTATGTAGTGCACCTTATCACCCATTGAACGTTAACCGATCAAGCTGAAACCTGGATAGGTAGATCAGAATTGTGTCTTAGTTGATGCCCGAACTTTTGGTTTTTCAAAATTTTGATTTTGAAGTCTTCTGGAGACGTTCCTTGGTTTCACCACACTAAAGGGTGGTGGGCAGAAAGGTCGATGGTGGAGGGCGACCGGAGGCCAGGAGGTTCAGCCCCGAAGGGGCGTAAACCGACTGGTTATAAATCAATCATAATAATCAGATTATAGAGCTATTAAAAATAAGGATCCTCTGAAACAGAATATTTGATTTTTTTAAATTGAGAAAACTGGAAACTTSGGTTTCAGATAAATTTTATTATTGCCTGGTCATTCACTTCGCTTGTTAATTAGACATTAACGAACCAATCTTGAACAAATTGGTTCTAAAAAAAGAAAATTTATGAAACTGTAAAATTTTTGAATACCGTATCTTTTACAGGAAATGAGATAAATTGGCTAAAATGACGGTTCAGGTGCCCTTCTATTAGAAGGTTTACGGTGAACAGTAAATACGGCAAATACTGCCGAGACACTAAAAAAACTAAAAGAGTACAATTTTTGTAATCTTAGAAACAGAAAAAATTCGAAGCTTGAGATTTTTTCCATTTTTTCCCCCTTTACTTTTTTTCCAACCCTCAAACTAAAAAATAGATTCCCCAGAAAAAAATTTGCTGTCCTCTTCTCCTTCCTTATCTTCTTTTCTCCTCTTCTGATCATCATCACATTTAATTGCACGATTTAATTACCATGACGACGTCTTCTTCTTCTTCCTCTTCTTCCGACGACGACGAAATCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAGGATCCTCTGAAACAGAAT</pcr_primer_p1>
		<pcr_primer_p2>AGTATTTGCCGTATTTACTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>ATAAGGATCCTCTGAAACAGAATATTTGATTTTTTTAAATTGAGAAAACTGGAAACTTGGGTTTCAGATAAATTTTATTATTGCCTGGTCATTCACTTCGCTTGTTAATTAGACATTAACGAACCAATCTTGAACAAATTGGTTCTAAAAAAAGAAAATTTATGAAACTGTAAAATTTTTGAATACCGTATCTTTTACAGGAAATGAGATAAATTGGCTAAAATGACGGTTCAGGTGCCCTTCTATTAGAAGGTTTACGGTGAACAGTAAATACGGCAAATACT</canonical_amplicon>
		<polymorphic_amplicon>ATAAGGATCCTCTGAAACAGAATATTTGATTTTTTTAAATTGAGAAAACTGGAAACTTSGGTTTCAGATAAATTTTATTATTGCCTGGTCATTCACTTCGCTTGTTAATTAGACATTAACGAACCAATCTTGAACAAATTGGTTCTAAAAAAAGAAAATTTATGAAACTGTAAAATTTTTGAATACCGTATCTTTTACAGGAAATGAGATAAATTGGCTAAAATGACGGTTCAGGTGCCCTTCTATTAGAAGGTTTACGGTGAACAGTAAATACGGCAAATACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34535</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>187416</contig_pos>
        <strand></strand>
        <context>ATTCCAGATT[T/C]CAGATTCCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGATTCGGATATTCTTTTTTCACATTCTGAGAAACTCCAGATTCCAGATT</left_flank>
        <right_flank>CAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAATTTCTCAAAAATCGAAAAGATTTGGCATTTTTAAAGACTAACATCATGAAAATCGGTTGAAAATTAAGAAAGTTATGGGGTTTTTGAATTTTGGGAATCAAATTTTTTTTCAAAAATCGAATTTTCAAAATTTCAGACTTTTAAATAAAGACTTACCTCTGAAAAAGTGATAAAAACTTGAAAAGCAATCATATTGAAAATTTTCAGTCGTTTTTTCAAAAAAACCAAGCAAATATGATCGACGGCGATTGGTACAGTAATCAGACCCGCCGACTGGAAGCATGCCAAAACGAAATGTCTTAAAAGTGAGCAATGGAGAATCGAGGGGTATTCTGGAGCCTTTCCGAATAGGAGAAACATTGTTTGCCACGTGGAAAGGAGGTAGAATGGCCAATAGAGGATTTGGGCGGAGAATGTGGCAAAGGAGATGGAGTTCTGGATATTGGGATTCGGATATTCTTTTTTCACATTCTGAGAAACTCCAGATTCCAGATTTCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCAAATTCTAGAAAATTCCGATTTCCTTTCAGAATAAAAAGTTAAAAACCCACCGCAAACTCCAGCAACAACTTCTTCCGTTTCCACAAAAAAACACAAAGGGCCATACTGGCCAACAGGGATACTGTATCCACAAACCACTCCGACAGTAACCTATGTGAATGCTCAATGGCAGTATAAGTTGGCTCAAAAATATCATCCCATCCCGTTTTATCAATAGAGCGTATTTTGTGAATTTTCGCATCTGTCGATTTGTACAAATATGGATAGAGATCATATAGGGAATGGTTCATTTTTAGGTAAATCTGAAAGTTCTGAAAATTAAAAAATCTGAAAAAAATACCAAAA</canonical>
            <polymorphic>TGAATTTCTCAAAAATCGAAAAGATTTGGCATTTTTAAAGACTAACATCATGAAAATCGGTTGAAAATTAAGAAAGTTATGGGGTTTTTGAATTTTGGGAATCAAATTTTTTTTCAAAAATCGAATTTTCAAAATTTCAGACTTTTAAATAAAGACTTACCTCTGAAAAAGTGATAAAAACTTGAAAAGCAATCATATTGAAAATTTTCAGTCGTTTTTTCAAAAAAACCAAGCAAATATGATCGACGGCGATTGGTACAGTAATCAGACCCGCCGACTGGAAGCATGCCAAAACGAAATGTCTTAAAAGTGAGCAATGGAGAATCGAGGGGTATTCTGGAGCCTTTCCGAATAGGAGAAACATTGTTTGCCACGTGGAAAGGAGGTAGAATGGCCAATAGAGGATTTGGGCGGAGAATGTGGCAAAGGAGATGGAGTTCTGGATATTGGGATTCGGATATTCTTTTTTCACATTCTGAGAAACTCCAGATTCCAGATTYCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCAAATTCTAGAAAATTCCGATTTCCTTTCAGAATAAAAAGTTAAAAACCCACCGCAAACTCCAGCAACAACTTCTTCCGTTTCCACAAAAAAACACAAAGGGCCATACTGGCCAACAGGGATACTGTATCCACAAACCACTCCGACAGTAACCTATGTGAATGCTCAATGGCAGTATAAGTTGGCTCAAAAATATCATCCCATCCCGTTTTATCAATAGAGCGTATTTTGTGAATTTTCGCATCTGTCGATTTGTACAAATATGGATAGAGATCATATAGGGAATGGTTCATTTTTAGGTAAATCTGAAAGTTCTGAAAATTAAAAAATCTGAAAAAAATACCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>169 163 139 113 107 103 82 25 25 21 16 16 12 9</canonical_bands>
                <polymorphic_bands>194 163 139 113 107 103 82 25 21 16 16 12 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAAGTGAGCAATGGAGAATC</pcr_primer_p1>
		<pcr_primer_p2>GAATCTGGAATCTGGAATCTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAAAAGTGAGCAATGGAGAATCGAGGGGTATTCTGGAGCCTTTCCGAATAGGAGAAACATTGTTTGCCACGTGGAAAGGAGGTAGAATGGCCAATAGAGGATTTGGGCGGAGAATGTGGCAAAGGAGATGGAGTTCTGGATATTGGGATTCGGATATTCTTTTTTCACATTCTGAGAAACTCCAGATTCCAGATTTCAGATTCCAGATTCCAGATTC</canonical_amplicon>
		<polymorphic_amplicon>TAAAAGTGAGCAATGGAGAATCGAGGGGTATTCTGGAGCCTTTCCGAATAGGAGAAACATTGTTTGCCACGTGGAAAGGAGGTAGAATGGCCAATAGAGGATTTGGGCGGAGAATGTGGCAAAGGAGATGGAGTTCTGGATATTGGGATTCGGATATTCTTTTTTCACATTCTGAGAAACTCCAGATTCCAGATTYCAGATTCCAGATTCCAGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34536</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>187433</contig_pos>
        <strand></strand>
        <context>CCAGATTCCA[G/T]ATTCCAGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCACATTCTGAGAAACTCCAGATTCCAGATTTCAGATTCCAGATTCCA</left_flank>
        <right_flank>ATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAGATTTGGCATTTTTAAAGACTAACATCATGAAAATCGGTTGAAAATTAAGAAAGTTATGGGGTTTTTGAATTTTGGGAATCAAATTTTTTTTCAAAAATCGAATTTTCAAAATTTCAGACTTTTAAATAAAGACTTACCTCTGAAAAAGTGATAAAAACTTGAAAAGCAATCATATTGAAAATTTTCAGTCGTTTTTTCAAAAAAACCAAGCAAATATGATCGACGGCGATTGGTACAGTAATCAGACCCGCCGACTGGAAGCATGCCAAAACGAAATGTCTTAAAAGTGAGCAATGGAGAATCGAGGGGTATTCTGGAGCCTTTCCGAATAGGAGAAACATTGTTTGCCACGTGGAAAGGAGGTAGAATGGCCAATAGAGGATTTGGGCGGAGAATGTGGCAAAGGAGATGGAGTTCTGGATATTGGGATTCGGATATTCTTTTTTCACATTCTGAGAAACTCCAGATTCCAGATTTCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCAAATTCTAGAAAATTCCGATTTCCTTTCAGAATAAAAAGTTAAAAACCCACCGCAAACTCCAGCAACAACTTCTTCCGTTTCCACAAAAAAACACAAAGGGCCATACTGGCCAACAGGGATACTGTATCCACAAACCACTCCGACAGTAACCTATGTGAATGCTCAATGGCAGTATAAGTTGGCTCAAAAATATCATCCCATCCCGTTTTATCAATAGAGCGTATTTTGTGAATTTTCGCATCTGTCGATTTGTACAAATATGGATAGAGATCATATAGGGAATGGTTCATTTTTAGGTAAATCTGAAAGTTCTGAAAATTAAAAAATCTGAAAAAAATACCAAAAAAAGAAATGTTAAAACC</canonical>
            <polymorphic>GAAAAGATTTGGCATTTTTAAAGACTAACATCATGAAAATCGGTTGAAAATTAAGAAAGTTATGGGGTTTTTGAATTTTGGGAATCAAATTTTTTTTCAAAAATCGAATTTTCAAAATTTCAGACTTTTAAATAAAGACTTACCTCTGAAAAAGTGATAAAAACTTGAAAAGCAATCATATTGAAAATTTTCAGTCGTTTTTTCAAAAAAACCAAGCAAATATGATCGACGGCGATTGGTACAGTAATCAGACCCGCCGACTGGAAGCATGCCAAAACGAAATGTCTTAAAAGTGAGCAATGGAGAATCGAGGGGTATTCTGGAGCCTTTCCGAATAGGAGAAACATTGTTTGCCACGTGGAAAGGAGGTAGAATGGCCAATAGAGGATTTGGGCGGAGAATGTGGCAAAGGAGATGGAGTTCTGGATATTGGGATTCGGATATTCTTTTTTCACATTCTGAGAAACTCCAGATTCCAGATTTCAGATTCCAGATTCCAKATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCAAATTCTAGAAAATTCCGATTTCCTTTCAGAATAAAAAGTTAAAAACCCACCGCAAACTCCAGCAACAACTTCTTCCGTTTCCACAAAAAAACACAAAGGGCCATACTGGCCAACAGGGATACTGTATCCACAAACCACTCCGACAGTAACCTATGTGAATGCTCAATGGCAGTATAAGTTGGCTCAAAAATATCATCCCATCCCGTTTTATCAATAGAGCGTATTTTGTGAATTTTCGCATCTGTCGATTTGTACAAATATGGATAGAGATCATATAGGGAATGGTTCATTTTTAGGTAAATCTGAAAGTTCTGAAAATTAAAAAATCTGAAAAAAATACCAAAAAAAGAAATGTTAAAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>367 223 129 82 38 14 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7</canonical_bands>
                <polymorphic_bands>367 223 129 82 38 14 14 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>357 288 103 46 32 14 13 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7</canonical_bands>
                <polymorphic_bands>357 288 103 46 32 14 14 13 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>367 223 129 82 38 14 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7</canonical_bands>
                <polymorphic_bands>367 223 129 82 38 14 14 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCACATTCTGAGAAACTCC</pcr_primer_p1>
		<pcr_primer_p2>GGTGGGTTTTTAACTTTTTATTC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTTTCACATTCTGAGAAACTCCAGATTCCAGATTTCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCAAATTCTAGAAAATTCCGATTTCCTTTCAGAATAAAAAGTTAAAAACCCACC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCACATTCTGAGAAACTCCAGATTCCAGATTTCAGATTCCAGATTCCAKATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCAAATTCTAGAAAATTCCGATTTCCTTTCAGAATAAAAAGTTAAAAACCCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34537</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>187496</contig_pos>
        <strand></strand>
        <context>ccagattcca[G/A]attccagatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCA</left_flank>
        <right_flank>ATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGGTTTTTGAATTTTGGGAATCAAATTTTTTTTCAAAAATCGAATTTTCAAAATTTCAGACTTTTAAATAAAGACTTACCTCTGAAAAAGTGATAAAAACTTGAAAAGCAATCATATTGAAAATTTTCAGTCGTTTTTTCAAAAAAACCAAGCAAATATGATCGACGGCGATTGGTACAGTAATCAGACCCGCCGACTGGAAGCATGCCAAAACGAAATGTCTTAAAAGTGAGCAATGGAGAATCGAGGGGTATTCTGGAGCCTTTCCGAATAGGAGAAACATTGTTTGCCACGTGGAAAGGAGGTAGAATGGCCAATAGAGGATTTGGGCGGAGAATGTGGCAAAGGAGATGGAGTTCTGGATATTGGGATTCGGATATTCTTTTTTCACATTCTGAGAAACTCCAGATTCCAGATTTCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCAAATTCTAGAAAATTCCGATTTCCTTTCAGAATAAAAAGTTAAAAACCCACCGCAAACTCCAGCAACAACTTCTTCCGTTTCCACAAAAAAACACAAAGGGCCATACTGGCCAACAGGGATACTGTATCCACAAACCACTCCGACAGTAACCTATGTGAATGCTCAATGGCAGTATAAGTTGGCTCAAAAATATCATCCCATCCCGTTTTATCAATAGAGCGTATTTTGTGAATTTTCGCATCTGTCGATTTGTACAAATATGGATAGAGATCATATAGGGAATGGTTCATTTTTAGGTAAATCTGAAAGTTCTGAAAATTAAAAAATCTGAAAAAAATACCAAAAAAAGAAATGTTAAAACCAAAACATACAATGTTTTTACAAAATCGAAAGAGGACAAAAAATTCTGGTCAGTAAAAGGGATA</canonical>
            <polymorphic>GGGGTTTTTGAATTTTGGGAATCAAATTTTTTTTCAAAAATCGAATTTTCAAAATTTCAGACTTTTAAATAAAGACTTACCTCTGAAAAAGTGATAAAAACTTGAAAAGCAATCATATTGAAAATTTTCAGTCGTTTTTTCAAAAAAACCAAGCAAATATGATCGACGGCGATTGGTACAGTAATCAGACCCGCCGACTGGAAGCATGCCAAAACGAAATGTCTTAAAAGTGAGCAATGGAGAATCGAGGGGTATTCTGGAGCCTTTCCGAATAGGAGAAACATTGTTTGCCACGTGGAAAGGAGGTAGAATGGCCAATAGAGGATTTGGGCGGAGAATGTGGCAAAGGAGATGGAGTTCTGGATATTGGGATTCGGATATTCTTTTTTCACATTCTGAGAAACTCCAGATTCCAGATTTCAGATTCCAGATTCCARATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCAAATTCTAGAAAATTCCGATTTCCTTTCAGAATAAAAAGTTAAAAACCCACCGCAAACTCCAGCAACAACTTCTTCCGTTTCCACAAAAAAACACAAAGGGCCATACTGGCCAACAGGGATACTGTATCCACAAACCACTCCGACAGTAACCTATGTGAATGCTCAATGGCAGTATAAGTTGGCTCAAAAATATCATCCCATCCCGTTTTATCAATAGAGCGTATTTTGTGAATTTTCGCATCTGTCGATTTGTACAAATATGGATAGAGATCATATAGGGAATGGTTCATTTTTAGGTAAATCTGAAAGTTCTGAAAATTAAAAAATCTGAAAAAAATACCAAAAAAAGAAATGTTAAAACCAAAACATACAATGTTTTTACAAAATCGAAAGAGGACAAAAAATTCTGGTCAGTAAAAGGGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>430 223 129 38 19 14 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7</canonical_bands>
                <polymorphic_bands>430 223 129 38 19 14 14 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>420 257 103 46 14 13 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7</canonical_bands>
                <polymorphic_bands>420 257 103 46 14 14 13 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>430 223 129 38 19 14 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7</canonical_bands>
                <polymorphic_bands>430 223 129 38 19 14 14 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCACATTCTGAGAAACTCC</pcr_primer_p1>
		<pcr_primer_p2>GGTGGGTTTTTAACTTTTTATTC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTTTCACATTCTGAGAAACTCCAGATTCCAGATTTCAGATTCCAGATTCCARATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCAAATTCTAGAAAATTCCGATTTCCTTTCAGAATAAAAAGTTAAAAACCCACC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCACATTCTGAGAAACTCCAGATTCCAGATTTCAGATTCCAGATTCCARATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCCAGATTCAAATTCTAGAAAATTCCGATTTCCTTTCAGAATAAAAAGTTAAAAACCCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34538</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>210078</contig_pos>
        <strand>+</strand>
        <context>ACTTGTTTTG[A/C]CAAAACTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAAAAGCTAGTCAGAATGGTTTATTGAAAAAAACAAGAAACTTGTTTTG</left_flank>
        <right_flank>CAAAACTCCAAAATTAATATCCAAAACACATTCTCCCGACTCGTTAAGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACAATTTTCTTTTATACCTGGTATGTGTGTCAATAAACGTCATGATTTTACAATTAATGACCTTGGTACAAAAAAAACCAAGGCAGAAGGAAAAGAAATCGTAGAAAAACCAAAAAATCAGTCTGTGTCACAAATTGACCAAATCGAAAAATTGGTTTTGTCGAAATTTACGACTTTTGGAACGAAACAAAAAGAGAACAAAGACTGTTTCGGGGAACTAGACAATTACACCAGCACGCCAAAAGGGAATTATGAGTCAGATGGGGGGGGGGGGGGGATATCTGTGATGTCACTGGAAAAAAGATCAAAATGANNNNNNNNNNTTTGAACAACAGGTGCGAACAAACAATCAGTAGGGCTTACTCAACAACTTTAGGAGATCAATTAGAGATTAGGTACATAAATATTACATGGTGTCTGTTTTTATTTGGAAGAAGGCGGAAGTCAAAAAAAGCTAGTCAGAATGGTTTATTGAAAAAAACAAGAAACTTGTTTTGTCAAAACTCCAAAATTAATATCCAAAACACATTCTCCCGACTCGTTAAGACAGAATCCTTTCTTGCAGGAACATCCCTGGCGGCAGACTTTTATACAAGCCATCTGGAAATGAGTTGTTACGGACAAGCTAAGAACATGATGTTCTAGCTAAGGACACTCACCGGCTCCTTCTCCCCACACTTCTTTGGACAAGGTGATCCACATTTCTGGAACTCTTGATTCTTCCCTGGACATCTGGAGTCGCCAATAGGCTCACAAGTTGGTATAGGATCACATGGGGTAGTTACACAAACGATTTCGCGGAGCACACATTGAGTATCAGCAGCGCACTTGACCAACGAACATGGATTCACTGGTGCAAAAATTTCTGTAACTGACATCCGAAGTACTCCTTATCATCCTTACCGATGATAGCCGCATCCTCCTGTCTGATGGTGGATCCAATAGCCAGAATTGCCAAAAGCAAAATGATCATATTCATTTTTTCTGGATTCTCCTCT</canonical>
            <polymorphic>AAACAATTTTCTTTTATACCTGGTATGTGTGTCAATAAACGTCATGATTTTACAATTAATGACCTTGGTACAAAAAAAACCAAGGCAGAAGGAAAAGAAATCGTAGAAAAACCAAAAAATCAGTCTGTGTCACAAATTGACCAAATCGAAAAATTGGTTTTGTCGAAATTTACGACTTTTGGAACGAAACAAAAAGAGAACAAAGACTGTTTCGGGGAACTAGACAATTACACCAGCACGCCAAAAGGGAATTATGAGTCAGATGGGGGGGGGGGGGGGATATCTGTGATGTCACTGGAAAAAAGATCAAAATGANNNNNNNNNNTTTGAACAACAGGTGCGAACAAACAATCAGTAGGGCTTACTCAACAACTTTAGGAGATCAATTAGAGATTAGGTACATAAATATTACATGGTGTCTGTTTTTATTTGGAAGAAGGCGGAAGTCAAAAAAAGCTAGTCAGAATGGTTTATTGAAAAAAACAAGAAACTTGTTTTGMCAAAACTCCAAAATTAATATCCAAAACACATTCTCCCGACTCGTTAAGACAGAATCCTTTCTTGCAGGAACATCCCTGGCGGCAGACTTTTATACAAGCCATCTGGAAATGAGTTGTTACGGACAAGCTAAGAACATGATGTTCTAGCTAAGGACACTCACCGGCTCCTTCTCCCCACACTTCTTTGGACAAGGTGATCCACATTTCTGGAACTCTTGATTCTTCCCTGGACATCTGGAGTCGCCAATAGGCTCACAAGTTGGTATAGGATCACATGGGGTAGTTACACAAACGATTTCGCGGAGCACACATTGAGTATCAGCAGCGCACTTGACCAACGAACATGGATTCACTGGTGCAAAAATTTCTGTAACTGACATCCGAAGTACTCCTTATCATCCTTACCGATGATAGCCGCATCCTCCTGTCTGATGGTGGATCCAATAGCCAGAATTGCCAAAAGCAAAATGATCATATTCATTTTTTCTGGATTCTCCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCAACAACTTTAGGAGATCAA</pcr_primer_p1>
		<pcr_primer_p2>CATTTCCAGATGGCTTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACTCAACAACTTTAGGAGATCAATTAGAGATTAGGTACATAAATATTACATGGTGTCTGTTTTTATTTGGAAGAAGGCGGAAGTCAAAAAAAGCTAGTCAGAATGGTTTATTGAAAAAAACAAGAAACTTGTTTTGTCAAAACTCCAAAATTAATATCCAAAACACATTCTCCCGACTCGTTAAGACAGAATCCTTTCTTGCAGGAACATCCCTGGCGGCAGACTTTTATACAAGCCATCTGGAAATG</canonical_amplicon>
		<polymorphic_amplicon>ACTCAACAACTTTAGGAGATCAATTAGAGATTAGGTACATAAATATTACATGGTGTCTGTTTTTATTTGGAAGAAGGCGGAAGTCAAAAAAAGCTAGTCAGAATGGTTTATTGAAAAAAACAAGAAACTTGTTTTGMCAAAACTCCAAAATTAATATCCAAAACACATTCTCCCGACTCGTTAAGACAGAATCCTTTCTTGCAGGAACATCCCTGGCGGCAGACTTTTATACAAGCCATCTGGAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34539</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>210134</contig_pos>
        <strand>+</strand>
        <context>AAGACAGAAT[C/T]CTTTCTTGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCCAAAATTAATATCCAAAACACATTCTCCCGACTCGTTAAGACAGAAT</left_flank>
        <right_flank>CTTTCTTGCAGGAACATCCCTGGCGGCAGACTTTTATACAAGCCATCTGG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATGACCTTGGTACAAAAAAAACCAAGGCAGAAGGAAAAGAAATCGTAGAAAAACCAAAAAATCAGTCTGTGTCACAAATTGACCAAATCGAAAAATTGGTTTTGTCGAAATTTACGACTTTTGGAACGAAACAAAAAGAGAACAAAGACTGTTTCGGGGAACTAGACAATTACACCAGCACGCCAAAAGGGAATTATGAGTCAGATGGGGGGGGGGGGGGGATATCTGTGATGTCACTGGAAAAAAGATCAAAATGANNNNNNNNNNTTTGAACAACAGGTGCGAACAAACAATCAGTAGGGCTTACTCAACAACTTTAGGAGATCAATTAGAGATTAGGTACATAAATATTACATGGTGTCTGTTTTTATTTGGAAGAAGGCGGAAGTCAAAAAAAGCTAGTCAGAATGGTTTATTGAAAAAAACAAGAAACTTGTTTTGTCAAAACTCCAAAATTAATATCCAAAACACATTCTCCCGACTCGTTAAGACAGAATCCTTTCTTGCAGGAACATCCCTGGCGGCAGACTTTTATACAAGCCATCTGGAAATGAGTTGTTACGGACAAGCTAAGAACATGATGTTCTAGCTAAGGACACTCACCGGCTCCTTCTCCCCACACTTCTTTGGACAAGGTGATCCACATTTCTGGAACTCTTGATTCTTCCCTGGACATCTGGAGTCGCCAATAGGCTCACAAGTTGGTATAGGATCACATGGGGTAGTTACACAAACGATTTCGCGGAGCACACATTGAGTATCAGCAGCGCACTTGACCAACGAACATGGATTCACTGGTGCAAAAATTTCTGTAACTGACATCCGAAGTACTCCTTATCATCCTTACCGATGATAGCCGCATCCTCCTGTCTGATGGTGGATCCAATAGCCAGAATTGCCAAAAGCAAAATGATCATATTCATTTTTTCTGGATTCTCCTCTCAGAGAACCTCGTGAAGTTCCTCTACCAGCATTCCATTTTTATAGGACCTCATGAT</canonical>
            <polymorphic>TAATGACCTTGGTACAAAAAAAACCAAGGCAGAAGGAAAAGAAATCGTAGAAAAACCAAAAAATCAGTCTGTGTCACAAATTGACCAAATCGAAAAATTGGTTTTGTCGAAATTTACGACTTTTGGAACGAAACAAAAAGAGAACAAAGACTGTTTCGGGGAACTAGACAATTACACCAGCACGCCAAAAGGGAATTATGAGTCAGATGGGGGGGGGGGGGGGATATCTGTGATGTCACTGGAAAAAAGATCAAAATGANNNNNNNNNNTTTGAACAACAGGTGCGAACAAACAATCAGTAGGGCTTACTCAACAACTTTAGGAGATCAATTAGAGATTAGGTACATAAATATTACATGGTGTCTGTTTTTATTTGGAAGAAGGCGGAAGTCAAAAAAAGCTAGTCAGAATGGTTTATTGAAAAAAACAAGAAACTTGTTTTGTCAAAACTCCAAAATTAATATCCAAAACACATTCTCCCGACTCGTTAAGACAGAATYCTTTCTTGCAGGAACATCCCTGGCGGCAGACTTTTATACAAGCCATCTGGAAATGAGTTGTTACGGACAAGCTAAGAACATGATGTTCTAGCTAAGGACACTCACCGGCTCCTTCTCCCCACACTTCTTTGGACAAGGTGATCCACATTTCTGGAACTCTTGATTCTTCCCTGGACATCTGGAGTCGCCAATAGGCTCACAAGTTGGTATAGGATCACATGGGGTAGTTACACAAACGATTTCGCGGAGCACACATTGAGTATCAGCAGCGCACTTGACCAACGAACATGGATTCACTGGTGCAAAAATTTCTGTAACTGACATCCGAAGTACTCCTTATCATCCTTACCGATGATAGCCGCATCCTCCTGTCTGATGGTGGATCCAATAGCCAGAATTGCCAAAAGCAAAATGATCATATTCATTTTTTCTGGATTCTCCTCTCAGAGAACCTCGTGAAGTTCCTCTACCAGCATTCCATTTTTATAGGACCTCATGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>282 200 166 143 109 66 20 14</canonical_bands>
                <polymorphic_bands>282 200 180 143 109 66 20</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>496 166 143 129 66</canonical_bands>
                <polymorphic_bands>662 143 129 66</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGCTAGTCAGAATGGTTTA</pcr_primer_p1>
		<pcr_primer_p2>GATCACCTTGTCCAAAGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGCTAGTCAGAATGGTTTATTGAAAAAAACAAGAAACTTGTTTTGTCAAAACTCCAAAATTAATATCCAAAACACATTCTCCCGACTCGTTAAGACAGAATCCTTTCTTGCAGGAACATCCCTGGCGGCAGACTTTTATACAAGCCATCTGGAAATGAGTTGTTACGGACAAGCTAAGAACATGATGTTCTAGCTAAGGACACTCACCGGCTCCTTCTCCCCACACTTCTTTGGACAAGGTGATC</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGCTAGTCAGAATGGTTTATTGAAAAAAACAAGAAACTTGTTTTGTCAAAACTCCAAAATTAATATCCAAAACACATTCTCCCGACTCGTTAAGACAGAATYCTTTCTTGCAGGAACATCCCTGGCGGCAGACTTTTATACAAGCCATCTGGAAATGAGTTGTTACGGACAAGCTAAGAACATGATGTTCTAGCTAAGGACACTCACCGGCTCCTTCTCCCCACACTTCTTTGGACAAGGTGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34540</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>210199</contig_pos>
        <strand>+</strand>
        <context>GAGTTGTTAC[C/G]GACAAGCTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CATCCCTGGCGGCAGACTTTTATACAAGCCATCTGGAAATGAGTTGTTAC</left_flank>
        <right_flank>GACAAGCTAAGAACATGATGTTCTAGCTAAGGACACTCACCGGCTCCTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCTGTGTCACAAATTGACCAAATCGAAAAATTGGTTTTGTCGAAATTTACGACTTTTGGAACGAAACAAAAAGAGAACAAAGACTGTTTCGGGGAACTAGACAATTACACCAGCACGCCAAAAGGGAATTATGAGTCAGATGGGGGGGGGGGGGGGATATCTGTGATGTCACTGGAAAAAAGATCAAAATGANNNNNNNNNNTTTGAACAACAGGTGCGAACAAACAATCAGTAGGGCTTACTCAACAACTTTAGGAGATCAATTAGAGATTAGGTACATAAATATTACATGGTGTCTGTTTTTATTTGGAAGAAGGCGGAAGTCAAAAAAAGCTAGTCAGAATGGTTTATTGAAAAAAACAAGAAACTTGTTTTGTCAAAACTCCAAAATTAATATCCAAAACACATTCTCCCGACTCGTTAAGACAGAATCCTTTCTTGCAGGAACATCCCTGGCGGCAGACTTTTATACAAGCCATCTGGAAATGAGTTGTTACGGACAAGCTAAGAACATGATGTTCTAGCTAAGGACACTCACCGGCTCCTTCTCCCCACACTTCTTTGGACAAGGTGATCCACATTTCTGGAACTCTTGATTCTTCCCTGGACATCTGGAGTCGCCAATAGGCTCACAAGTTGGTATAGGATCACATGGGGTAGTTACACAAACGATTTCGCGGAGCACACATTGAGTATCAGCAGCGCACTTGACCAACGAACATGGATTCACTGGTGCAAAAATTTCTGTAACTGACATCCGAAGTACTCCTTATCATCCTTACCGATGATAGCCGCATCCTCCTGTCTGATGGTGGATCCAATAGCCAGAATTGCCAAAAGCAAAATGATCATATTCATTTTTTCTGGATTCTCCTCTCAGAGAACCTCGTGAAGTTCCTCTACCAGCATTCCATTTTTATAGGACCTCATGATTTTCGATCGTTTGAGCAAATAACATGTTGATTCCGTTCCTGGATTCATGTTTTCAATGGATTGAC</canonical>
            <polymorphic>AGTCTGTGTCACAAATTGACCAAATCGAAAAATTGGTTTTGTCGAAATTTACGACTTTTGGAACGAAACAAAAAGAGAACAAAGACTGTTTCGGGGAACTAGACAATTACACCAGCACGCCAAAAGGGAATTATGAGTCAGATGGGGGGGGGGGGGGGATATCTGTGATGTCACTGGAAAAAAGATCAAAATGANNNNNNNNNNTTTGAACAACAGGTGCGAACAAACAATCAGTAGGGCTTACTCAACAACTTTAGGAGATCAATTAGAGATTAGGTACATAAATATTACATGGTGTCTGTTTTTATTTGGAAGAAGGCGGAAGTCAAAAAAAGCTAGTCAGAATGGTTTATTGAAAAAAACAAGAAACTTGTTTTGTCAAAACTCCAAAATTAATATCCAAAACACATTCTCCCGACTCGTTAAGACAGAATCCTTTCTTGCAGGAACATCCCTGGCGGCAGACTTTTATACAAGCCATCTGGAAATGAGTTGTTACSGACAAGCTAAGAACATGATGTTCTAGCTAAGGACACTCACCGGCTCCTTCTCCCCACACTTCTTTGGACAAGGTGATCCACATTTCTGGAACTCTTGATTCTTCCCTGGACATCTGGAGTCGCCAATAGGCTCACAAGTTGGTATAGGATCACATGGGGTAGTTACACAAACGATTTCGCGGAGCACACATTGAGTATCAGCAGCGCACTTGACCAACGAACATGGATTCACTGGTGCAAAAATTTCTGTAACTGACATCCGAAGTACTCCTTATCATCCTTACCGATGATAGCCGCATCCTCCTGTCTGATGGTGGATCCAATAGCCAGAATTGCCAAAAGCAAAATGATCATATTCATTTTTTCTGGATTCTCCTCTCAGAGAACCTCGTGAAGTTCCTCTACCAGCATTCCATTTTTATAGGACCTCATGATTTTCGATCGTTTGAGCAAATAACATGTTGATTCCGTTCCTGGATTCATGTTTTCAATGGATTGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAATATCCAAAACACATTCTCC</pcr_primer_p1>
		<pcr_primer_p2>TATACCAACTTGTGAGCCTATTG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTAATATCCAAAACACATTCTCCCGACTCGTTAAGACAGAATCCTTTCTTGCAGGAACATCCCTGGCGGCAGACTTTTATACAAGCCATCTGGAAATGAGTTGTTACGGACAAGCTAAGAACATGATGTTCTAGCTAAGGACACTCACCGGCTCCTTCTCCCCACACTTCTTTGGACAAGGTGATCCACATTTCTGGAACTCTTGATTCTTCCCTGGACATCTGGAGTCGCCAATAGGCTCACAAGTTGGTATA</canonical_amplicon>
		<polymorphic_amplicon>TTAATATCCAAAACACATTCTCCCGACTCGTTAAGACAGAATCCTTTCTTGCAGGAACATCCCTGGCGGCAGACTTTTATACAAGCCATCTGGAAATGAGTTGTTACSGACAAGCTAAGAACATGATGTTCTAGCTAAGGACACTCACCGGCTCCTTCTCCCCACACTTCTTTGGACAAGGTGATCCACATTTCTGGAACTCTTGATTCTTCCCTGGACATCTGGAGTCGCCAATAGGCTCACAAGTTGGTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34541</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>210210</contig_pos>
        <strand>+</strand>
        <context>GACAAGCTAA[C/G]AACATGATGT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCAGACTTTTATACAAGCCATCTGGAAATGAGTTGTTACGGACAAGCTAA</left_flank>
        <right_flank>AACATGATGTTCTAGCTAAGGACACTCACCGGCTCCTTCTCCCCACACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAATTGACCAAATCGAAAAATTGGTTTTGTCGAAATTTACGACTTTTGGAACGAAACAAAAAGAGAACAAAGACTGTTTCGGGGAACTAGACAATTACACCAGCACGCCAAAAGGGAATTATGAGTCAGATGGGGGGGGGGGGGGGATATCTGTGATGTCACTGGAAAAAAGATCAAAATGANNNNNNNNNNTTTGAACAACAGGTGCGAACAAACAATCAGTAGGGCTTACTCAACAACTTTAGGAGATCAATTAGAGATTAGGTACATAAATATTACATGGTGTCTGTTTTTATTTGGAAGAAGGCGGAAGTCAAAAAAAGCTAGTCAGAATGGTTTATTGAAAAAAACAAGAAACTTGTTTTGTCAAAACTCCAAAATTAATATCCAAAACACATTCTCCCGACTCGTTAAGACAGAATCCTTTCTTGCAGGAACATCCCTGGCGGCAGACTTTTATACAAGCCATCTGGAAATGAGTTGTTACGGACAAGCTAAGAACATGATGTTCTAGCTAAGGACACTCACCGGCTCCTTCTCCCCACACTTCTTTGGACAAGGTGATCCACATTTCTGGAACTCTTGATTCTTCCCTGGACATCTGGAGTCGCCAATAGGCTCACAAGTTGGTATAGGATCACATGGGGTAGTTACACAAACGATTTCGCGGAGCACACATTGAGTATCAGCAGCGCACTTGACCAACGAACATGGATTCACTGGTGCAAAAATTTCTGTAACTGACATCCGAAGTACTCCTTATCATCCTTACCGATGATAGCCGCATCCTCCTGTCTGATGGTGGATCCAATAGCCAGAATTGCCAAAAGCAAAATGATCATATTCATTTTTTCTGGATTCTCCTCTCAGAGAACCTCGTGAAGTTCCTCTACCAGCATTCCATTTTTATAGGACCTCATGATTTTCGATCGTTTGAGCAAATAACATGTTGATTCCGTTCCTGGATTCATGTTTTCAATGGATTGACAAAATTTGAAA</canonical>
            <polymorphic>CAAATTGACCAAATCGAAAAATTGGTTTTGTCGAAATTTACGACTTTTGGAACGAAACAAAAAGAGAACAAAGACTGTTTCGGGGAACTAGACAATTACACCAGCACGCCAAAAGGGAATTATGAGTCAGATGGGGGGGGGGGGGGGATATCTGTGATGTCACTGGAAAAAAGATCAAAATGANNNNNNNNNNTTTGAACAACAGGTGCGAACAAACAATCAGTAGGGCTTACTCAACAACTTTAGGAGATCAATTAGAGATTAGGTACATAAATATTACATGGTGTCTGTTTTTATTTGGAAGAAGGCGGAAGTCAAAAAAAGCTAGTCAGAATGGTTTATTGAAAAAAACAAGAAACTTGTTTTGTCAAAACTCCAAAATTAATATCCAAAACACATTCTCCCGACTCGTTAAGACAGAATCCTTTCTTGCAGGAACATCCCTGGCGGCAGACTTTTATACAAGCCATCTGGAAATGAGTTGTTACGGACAAGCTAASAACATGATGTTCTAGCTAAGGACACTCACCGGCTCCTTCTCCCCACACTTCTTTGGACAAGGTGATCCACATTTCTGGAACTCTTGATTCTTCCCTGGACATCTGGAGTCGCCAATAGGCTCACAAGTTGGTATAGGATCACATGGGGTAGTTACACAAACGATTTCGCGGAGCACACATTGAGTATCAGCAGCGCACTTGACCAACGAACATGGATTCACTGGTGCAAAAATTTCTGTAACTGACATCCGAAGTACTCCTTATCATCCTTACCGATGATAGCCGCATCCTCCTGTCTGATGGTGGATCCAATAGCCAGAATTGCCAAAAGCAAAATGATCATATTCATTTTTTCTGGATTCTCCTCTCAGAGAACCTCGTGAAGTTCCTCTACCAGCATTCCATTTTTATAGGACCTCATGATTTTCGATCGTTTGAGCAAATAACATGTTGATTCCGTTCCTGGATTCATGTTTTCAATGGATTGACAAAATTTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>496 351 133 20</canonical_bands>
                <polymorphic_bands>516 351 133</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAATATCCAAAACACATTCTCC</pcr_primer_p1>
		<pcr_primer_p2>TATACCAACTTGTGAGCCTATTG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTAATATCCAAAACACATTCTCCCGACTCGTTAAGACAGAATCCTTTCTTGCAGGAACATCCCTGGCGGCAGACTTTTATACAAGCCATCTGGAAATGAGTTGTTACGGACAAGCTAAGAACATGATGTTCTAGCTAAGGACACTCACCGGCTCCTTCTCCCCACACTTCTTTGGACAAGGTGATCCACATTTCTGGAACTCTTGATTCTTCCCTGGACATCTGGAGTCGCCAATAGGCTCACAAGTTGGTATA</canonical_amplicon>
		<polymorphic_amplicon>TTAATATCCAAAACACATTCTCCCGACTCGTTAAGACAGAATCCTTTCTTGCAGGAACATCCCTGGCGGCAGACTTTTATACAAGCCATCTGGAAATGAGTTGTTACGGACAAGCTAASAACATGATGTTCTAGCTAAGGACACTCACCGGCTCCTTCTCCCCACACTTCTTTGGACAAGGTGATCCACATTTCTGGAACTCTTGATTCTTCCCTGGACATCTGGAGTCGCCAATAGGCTCACAAGTTGGTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34542</snp_id>
        <super_contig>c009100715.Contig1</super_contig>
        <contig_pos>210318</contig_pos>
        <strand></strand>
        <context>GACATCTGGA[G/A]TCGCCAATAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAAGGTGATCCACATTTCTGGAACTCTTGATTCTTCCCTGGACATCTGGA</left_flank>
        <right_flank>TCGCCAATAGGCTCACAAGTTGGTATAGGATCACATGGGGTAGTTACACA</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAAAGGGAATTATGAGTCAGATGGGGGGGGGGGGGGGATATCTGTGATGTCACTGGAAAAAAGATCAAAATGANNNNNNNNNNTTTGAACAACAGGTGCGAACAAACAATCAGTAGGGCTTACTCAACAACTTTAGGAGATCAATTAGAGATTAGGTACATAAATATTACATGGTGTCTGTTTTTATTTGGAAGAAGGCGGAAGTCAAAAAAAGCTAGTCAGAATGGTTTATTGAAAAAAACAAGAAACTTGTTTTGTCAAAACTCCAAAATTAATATCCAAAACACATTCTCCCGACTCGTTAAGACAGAATCCTTTCTTGCAGGAACATCCCTGGCGGCAGACTTTTATACAAGCCATCTGGAAATGAGTTGTTACGGACAAGCTAAGAACATGATGTTCTAGCTAAGGACACTCACCGGCTCCTTCTCCCCACACTTCTTTGGACAAGGTGATCCACATTTCTGGAACTCTTGATTCTTCCCTGGACATCTGGAGTCGCCAATAGGCTCACAAGTTGGTATAGGATCACATGGGGTAGTTACACAAACGATTTCGCGGAGCACACATTGAGTATCAGCAGCGCACTTGACCAACGAACATGGATTCACTGGTGCAAAAATTTCTGTAACTGACATCCGAAGTACTCCTTATCATCCTTACCGATGATAGCCGCATCCTCCTGTCTGATGGTGGATCCAATAGCCAGAATTGCCAAAAGCAAAATGATCATATTCATTTTTTCTGGATTCTCCTCTCAGAGAACCTCGTGAAGTTCCTCTACCAGCATTCCATTTTTATAGGACCTCATGATTTTCGATCGTTTGAGCAAATAACATGTTGATTCCGTTCCTGGATTCATGTTTTCAATGGATTGACAAAATTTGAAAAAAAAAGTTTTCGTTGTATTGGACCATTGTATGCAAATTATAAAAGACTTCCGGATTATTGGTTTTCGGAAAAGAATTTTTGTGAAATTGTCAAAATATGTATACTGT</canonical>
            <polymorphic>CCAAAAGGGAATTATGAGTCAGATGGGGGGGGGGGGGGGATATCTGTGATGTCACTGGAAAAAAGATCAAAATGANNNNNNNNNNTTTGAACAACAGGTGCGAACAAACAATCAGTAGGGCTTACTCAACAACTTTAGGAGATCAATTAGAGATTAGGTACATAAATATTACATGGTGTCTGTTTTTATTTGGAAGAAGGCGGAAGTCAAAAAAAGCTAGTCAGAATGGTTTATTGAAAAAAACAAGAAACTTGTTTTGTCAAAACTCCAAAATTAATATCCAAAACACATTCTCCCGACTCGTTAAGACAGAATCCTTTCTTGCAGGAACATCCCTGGCGGCAGACTTTTATACAAGCCATCTGGAAATGAGTTGTTACGGACAAGCTAAGAACATGATGTTCTAGCTAAGGACACTCACCGGCTCCTTCTCCCCACACTTCTTTGGACAAGGTGATCCACATTTCTGGAACTCTTGATTCTTCCCTGGACATCTGGARTCGCCAATAGGCTCACAAGTTGGTATAGGATCACATGGGGTAGTTACACAAACGATTTCGCGGAGCACACATTGAGTATCAGCAGCGCACTTGACCAACGAACATGGATTCACTGGTGCAAAAATTTCTGTAACTGACATCCGAAGTACTCCTTATCATCCTTACCGATGATAGCCGCATCCTCCTGTCTGATGGTGGATCCAATAGCCAGAATTGCCAAAAGCAAAATGATCATATTCATTTTTTCTGGATTCTCCTCTCAGAGAACCTCGTGAAGTTCCTCTACCAGCATTCCATTTTTATAGGACCTCATGATTTTCGATCGTTTGAGCAAATAACATGTTGATTCCGTTCCTGGATTCATGTTTTCAATGGATTGACAAAATTTGAAAAAAAAAGTTTTCGTTGTATTGGACCATTGTATGCAAATTATAAAAGACTTCCGGATTATTGGTTTTCGGAAAAGAATTTTTGTGAAATTGTCAAAATATGTATACTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCTAGCTAAGGACACTCACC</pcr_primer_p1>
		<pcr_primer_p2>AGTACTTCGGATGTCAGTTACAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTCTAGCTAAGGACACTCACCGGCTCCTTCTCCCCACACTTCTTTGGACAAGGTGATCCACATTTCTGGAACTCTTGATTCTTCCCTGGACATCTGGAGTCGCCAATAGGCTCACAAGTTGGTATAGGATCACATGGGGTAGTTACACAAACGATTTCGCGGAGCACACATTGAGTATCAGCAGCGCACTTGACCAACGAACATGGATTCACTGGTGCAAAAATTTCTGTAACTGACATCCGAAGTACT</canonical_amplicon>
		<polymorphic_amplicon>GTTCTAGCTAAGGACACTCACCGGCTCCTTCTCCCCACACTTCTTTGGACAAGGTGATCCACATTTCTGGAACTCTTGATTCTTCCCTGGACATCTGGARTCGCCAATAGGCTCACAAGTTGGTATAGGATCACATGGGGTAGTTACACAAACGATTTCGCGGAGCACACATTGAGTATCAGCAGCGCACTTGACCAACGAACATGGATTCACTGGTGCAAAAATTTCTGTAACTGACATCCGAAGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34543</snp_id>
        <super_contig>c009100934.Contig1</super_contig>
        <contig_pos>96337</contig_pos>
        <strand></strand>
        <context>TTtcactttt[T/A]atctaattta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTCAGCAGTTTTGAGTTTGGTGGCACAGGTGAGGAATAATTTCACTTTT</left_flank>
        <right_flank>ATCTAATTTATCTCATTTCCTATCAAAGATATCAAAAAACTGTCAACTGA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGATCTGGAAATTCTTTTTTTCAGAATATAATATTCACCTTGATAGTTCTTCAAATCACCTCTCTCCTGTGCAGTTTTATCAAAAAACATCAAAGTGTGGCAGCGATAGATCAAAAACGAATAATGGGAACTTTCCGAAAGTATCTTATCAAAGTTCTACTTCATATCCCACCACTTCTTATCAGTGTATCATTTGGATTCTCAAATTTGGATAAAGCCGAAGAAATTGAAATAGCCAATGCTGAATATCCAAAACTAGTTCATTTGCTATCCCTACCTAATGCAGAATTGTACTCAACATCGTCTGTTTCCATTAAAATTACATTAGTGATAATGATAGGGACTTTTGTCCTATTTTGTTCGTTATTCCTTTTTTATTACATTCAAATTCTACAAATGCTGCATGGTCATCGGCAATTTATGGCAGCGAGAACTTATTCAAAACATGTTTCAGCAGTTTTGAGTTTGGTGGCACAGGTGAGGAATAATTTCACTTTTTATCTAATTTATCTCATTTCCTATCAAAGATATCAAAAAACTGTCAACTGATAAAATGTTATTGATGTTCTGGTAAACATTTTATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAGATAAATCAGCTTAAAATTGGCTACCGTAGCCCAAATGTGGGCCTGGCCAACAAGCTAAACTGCTCGAAAAGCTTATATGAACGAAATTTCGAGAAAATTTTTTTTCCATATCTCCCCCCCCCCCCTTCCTCTTAAATTAGAGGTTTTACGGTAATTTAACCCATTTTCAGCTAACAGTCCTTGTCATCTGGTTGGCCATCCCTCTAGCTGTTCTGCTTGGCGATGTCATTCTACACATTGAAGGATTCGAAGCATTCTGTAATCTTCTAATTTGTCTATTCTCTACACACTCTATCATGAGTACCATTGTTATGGTTTTCACATTTCCAGCTTTTCGACGAGTGGTTTCTTGTAGAGAGAAGTGAGTTTCAAAAACCT</canonical>
            <polymorphic>ACGATCTGGAAATTCTTTTTTTCAGAATATAATATTCACCTTGATAGTTCTTCAAATCACCTCTCTCCTGTGCAGTTTTATCAAAAAACATCAAAGTGTGGCAGCGATAGATCAAAAACGAATAATGGGAACTTTCCGAAAGTATCTTATCAAAGTTCTACTTCATATCCCACCACTTCTTATCAGTGTATCATTTGGATTCTCAAATTTGGATAAAGCCGAAGAAATTGAAATAGCCAATGCTGAATATCCAAAACTAGTTCATTTGCTATCCCTACCTAATGCAGAATTGTACTCAACATCGTCTGTTTCCATTAAAATTACATTAGTGATAATGATAGGGACTTTTGTCCTATTTTGTTCGTTATTCCTTTTTTATTACATTCAAATTCTACAAATGCTGCATGGTCATCGGCAATTTATGGCAGCGAGAACTTATTCAAAACATGTTTCAGCAGTTTTGAGTTTGGTGGCACAGGTGAGGAATAATTTCACTTTTWATCTAATTTATCTCATTTCCTATCAAAGATATCAAAAAACTGTCAACTGATAAAATGTTATTGATGTTCTGGTAAACATTTTATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAGATAAATCAGCTTAAAATTGGCTACCGTAGCCCAAATGTGGGCCTGGCCAACAAGCTAAACTGCTCGAAAAGCTTATATGAACGAAATTTCGAGAAAATTTTTTTTCCATATCTCCCCCCCCCCCCTTCCTCTTAAATTAGAGGTTTTACGGTAATTTAACCCATTTTCAGCTAACAGTCCTTGTCATCTGGTTGGCCATCCCTCTAGCTGTTCTGCTTGGCGATGTCATTCTACACATTGAAGGATTCGAAGCATTCTGTAATCTTCTAATTTGTCTATTCTCTACACACTCTATCATGAGTACCATTGTTATGGTTTTCACATTTCCAGCTTTTCGACGAGTGGTTTCTTGTAGAGAGAAGTGAGTTTCAAAAACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCGAGAACTTATTCAAAACAT</pcr_primer_p1>
		<pcr_primer_p2>TTCGAGCAGTTTAGCTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>AGCGAGAACTTATTCAAAACATGTTTCAGCAGTTTTGAGTTTGGTGGCACAGGTGAGGAATAATTTCACTTTTTATCTAATTTATCTCATTTCCTATCAAAGATATCAAAAAACTGTCAACTGATAAAATGTTATTGATGTTCTGGTAAACATTTTATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAGATAAATCAGCTTAAAATTGGCTACCGTAGCCCAAATGTGGGCCTGGCCAACAAGCTAAACTGCTCGAA</canonical_amplicon>
		<polymorphic_amplicon>AGCGAGAACTTATTCAAAACATGTTTCAGCAGTTTTGAGTTTGGTGGCACAGGTGAGGAATAATTTCACTTTTWATCTAATTTATCTCATTTCCTATCAAAGATATCAAAAAACTGTCAACTGATAAAATGTTATTGATGTTCTGGTAAACATTTTATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAGATAAATCAGCTTAAAATTGGCTACCGTAGCCCAAATGTGGGCCTGGCCAACAAGCTAAACTGCTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34544</snp_id>
        <super_contig>c009100934.Contig1</super_contig>
        <contig_pos>96409</contig_pos>
        <strand></strand>
        <context>tgatgttctg[G/A]taaacatttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATCAAAGATATCAAAAAACTGTCAACTGATAAAATGTTATTGATGTTCTG</left_flank>
        <right_flank>TAAACATTTTATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTTTTATCAAAAAACATCAAAGTGTGGCAGCGATAGATCAAAAACGAATAATGGGAACTTTCCGAAAGTATCTTATCAAAGTTCTACTTCATATCCCACCACTTCTTATCAGTGTATCATTTGGATTCTCAAATTTGGATAAAGCCGAAGAAATTGAAATAGCCAATGCTGAATATCCAAAACTAGTTCATTTGCTATCCCTACCTAATGCAGAATTGTACTCAACATCGTCTGTTTCCATTAAAATTACATTAGTGATAATGATAGGGACTTTTGTCCTATTTTGTTCGTTATTCCTTTTTTATTACATTCAAATTCTACAAATGCTGCATGGTCATCGGCAATTTATGGCAGCGAGAACTTATTCAAAACATGTTTCAGCAGTTTTGAGTTTGGTGGCACAGGTGAGGAATAATTTCACTTTTTATCTAATTTATCTCATTTCCTATCAAAGATATCAAAAAACTGTCAACTGATAAAATGTTATTGATGTTCTGGTAAACATTTTATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAGATAAATCAGCTTAAAATTGGCTACCGTAGCCCAAATGTGGGCCTGGCCAACAAGCTAAACTGCTCGAAAAGCTTATATGAACGAAATTTCGAGAAAATTTTTTTTCCATATCTCCCCCCCCCCCCTTCCTCTTAAATTAGAGGTTTTACGGTAATTTAACCCATTTTCAGCTAACAGTCCTTGTCATCTGGTTGGCCATCCCTCTAGCTGTTCTGCTTGGCGATGTCATTCTACACATTGAAGGATTCGAAGCATTCTGTAATCTTCTAATTTGTCTATTCTCTACACACTCTATCATGAGTACCATTGTTATGGTTTTCACATTTCCAGCTTTTCGACGAGTGGTTTCTTGTAGAGAGAAGTGAGTTTCAAAAACCTCTAATATAAGGGCCCTCCTATTTTGACATTGAGCCAATTCATCTCAGCTCCTGTGAAAGATCAAAAAGCTGT</canonical>
            <polymorphic>CAGTTTTATCAAAAAACATCAAAGTGTGGCAGCGATAGATCAAAAACGAATAATGGGAACTTTCCGAAAGTATCTTATCAAAGTTCTACTTCATATCCCACCACTTCTTATCAGTGTATCATTTGGATTCTCAAATTTGGATAAAGCCGAAGAAATTGAAATAGCCAATGCTGAATATCCAAAACTAGTTCATTTGCTATCCCTACCTAATGCAGAATTGTACTCAACATCGTCTGTTTCCATTAAAATTACATTAGTGATAATGATAGGGACTTTTGTCCTATTTTGTTCGTTATTCCTTTTTTATTACATTCAAATTCTACAAATGCTGCATGGTCATCGGCAATTTATGGCAGCGAGAACTTATTCAAAACATGTTTCAGCAGTTTTGAGTTTGGTGGCACAGGTGAGGAATAATTTCACTTTTTATCTAATTTATCTCATTTCCTATCAAAGATATCAAAAAACTGTCAACTGATAAAATGTTATTGATGTTCTGRTAAACATTTTATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAGATAAATCAGCTTAAAATTGGCTACCGTAGCCCAAATGTGGGCCTGGCCAACAAGCTAAACTGCTCGAAAAGCTTATATGAACGAAATTTCGAGAAAATTTTTTTTCCATATCTCCCCCCCCCCCCTTCCTCTTAAATTAGAGGTTTTACGGTAATTTAACCCATTTTCAGCTAACAGTCCTTGTCATCTGGTTGGCCATCCCTCTAGCTGTTCTGCTTGGCGATGTCATTCTACACATTGAAGGATTCGAAGCATTCTGTAATCTTCTAATTTGTCTATTCTCTACACACTCTATCATGAGTACCATTGTTATGGTTTTCACATTTCCAGCTTTTCGACGAGTGGTTTCTTGTAGAGAGAAGTGAGTTTCAAAAACCTCTAATATAAGGGCCCTCCTATTTTGACATTGAGCCAATTCATCTCAGCTCCTGTGAAAGATCAAAAAGCTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 472 30</canonical_bands>
                <polymorphic_bands>528 472</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCGAGAACTTATTCAAAACAT</pcr_primer_p1>
		<pcr_primer_p2>TTCGAGCAGTTTAGCTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>AGCGAGAACTTATTCAAAACATGTTTCAGCAGTTTTGAGTTTGGTGGCACAGGTGAGGAATAATTTCACTTTTTATCTAATTTATCTCATTTCCTATCAAAGATATCAAAAAACTGTCAACTGATAAAATGTTATTGATGTTCTGGTAAACATTTTATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAGATAAATCAGCTTAAAATTGGCTACCGTAGCCCAAATGTGGGCCTGGCCAACAAGCTAAACTGCTCGAA</canonical_amplicon>
		<polymorphic_amplicon>AGCGAGAACTTATTCAAAACATGTTTCAGCAGTTTTGAGTTTGGTGGCACAGGTGAGGAATAATTTCACTTTTTATCTAATTTATCTCATTTCCTATCAAAGATATCAAAAAACTGTCAACTGATAAAATGTTATTGATGTTCTGRTAAACATTTTATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAGATAAATCAGCTTAAAATTGGCTACCGTAGCCCAAATGTGGGCCTGGCCAACAAGCTAAACTGCTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34545</snp_id>
        <super_contig>c009100934.Contig1</super_contig>
        <contig_pos>96903</contig_pos>
        <strand></strand>
        <context>aaagatcaaa[A/C]agctgtcaac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCTATTTTGACATTGAGCCAATTCATCTCAGCTCCTGTGAAAGATCAAA</left_flank>
        <right_flank>AGCTGTCAACTGATGAATTGTTTATCATCATAACGCAAACATTTTATCAG</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGGTAAACATTTTATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAGATAAATCAGCTTAAAATTGGCTACCGTAGCCCAAATGTGGGCCTGGCCAACAAGCTAAACTGCTCGAAAAGCTTATATGAACGAAATTTCGAGAAAATTTTTTTTCCATATCTCCCCCCCCCCCCTTCCTCTTAAATTAGAGGTTTTACGGTAATTTAACCCATTTTCAGCTAACAGTCCTTGTCATCTGGTTGGCCATCCCTCTAGCTGTTCTGCTTGGCGATGTCATTCTACACATTGAAGGATTCGAAGCATTCTGTAATCTTCTAATTTGTCTATTCTCTACACACTCTATCATGAGTACCATTGTTATGGTTTTCACATTTCCAGCTTTTCGACGAGTGGTTTCTTGTAGAGAGAAGTGAGTTTCAAAAACCTCTAATATAAGGGCCCTCCTATTTTGACATTGAGCCAATTCATCTCAGCTCCTGTGAAAGATCAAAAAGCTGTCAACTGATGAATTGTTTATCATCATAACGCAAACATTTTATCAGTTGAGACATTTTGATATCTTGCATAGAAGCGGAGATAAATTAGGTCAAACTTGGAGACCCTTCTATTACAGGTCTTACGGTCTTTTCTTTATGATACACTGATAAATTTGGTAACTTTTCAGACCTATGTTCTCTCCCGCCACTACCATGGTCCAGCCAAGGAAAGGGTTTCAGAATTGATCGGTTTATCGAAAAATAAATTATGTGATTCAATTATAATAGAACAAATCTACACAATGAATCAAACGTCTCTAGATCAACATATCAATTTGAGAGAAAACGAAATATGATTACAGATAATCGAGTAAGCGATTCGTCATGAATTCTGAGAAAAAAAAATAGTAGGACAAAAAACTTTTGGGGGTGTTTCAAAGGAGTGGGCAGACAGGAGATTGTTCTATTTTTTATGGAGTTCCCAGGACCCAGGACCCAGGACCCAGGACCCAGGAC</canonical>
            <polymorphic>TTCTGGTAAACATTTTATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAGATAAATCAGCTTAAAATTGGCTACCGTAGCCCAAATGTGGGCCTGGCCAACAAGCTAAACTGCTCGAAAAGCTTATATGAACGAAATTTCGAGAAAATTTTTTTTCCATATCTCCCCCCCCCCCCTTCCTCTTAAATTAGAGGTTTTACGGTAATTTAACCCATTTTCAGCTAACAGTCCTTGTCATCTGGTTGGCCATCCCTCTAGCTGTTCTGCTTGGCGATGTCATTCTACACATTGAAGGATTCGAAGCATTCTGTAATCTTCTAATTTGTCTATTCTCTACACACTCTATCATGAGTACCATTGTTATGGTTTTCACATTTCCAGCTTTTCGACGAGTGGTTTCTTGTAGAGAGAAGTGAGTTTCAAAAACCTCTAATATAAGGGCCCTCCTATTTTGACATTGAGCCAATTCATCTCAGCTCCTGTGAAAGATCAAAMAGCTGTCAACTGATGAATTGTTTATCATCATAACGCAAACATTTTATCAGTTGAGACATTTTGATATCTTGCATAGAAGCGGAGATAAATTAGGTCAAACTTGGAGACCCTTCTATTACAGGTCTTACGGTCTTTTCTTTATGATACACTGATAAATTTGGTAACTTTTCAGACCTATGTTCTCTCCCGCCACTACCATGGTCCAGCCAAGGAAAGGGTTTCAGAATTGATCGGTTTATCGAAAAATAAATTATGTGATTCAATTATAATAGAACAAATCTACACAATGAATCAAACGTCTCTAGATCAACATATCAATTTGAGAGAAAACGAAATATGATTACAGATAATCGAGTAAGCGATTCGTCATGAATTCTGAGAAAAAAAAATAGTAGGACAAAAAACTTTTGGGGGTGTTTCAAAGGAGTGGGCAGACAGGAGATTGTTCTATTTTTTATGGAGTTCCCAGGACCCAGGACCCAGGACCCAGGACCCAGGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTGTAGAGAGAAGTGAGTTTCA</pcr_primer_p1>
		<pcr_primer_p2>CCAAATTTATCAGTGTATCATAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>TCTTGTAGAGAGAAGTGAGTTTCAAAAACCTCTAATATAAGGGCCCTCCTATTTTGACATTGAGCCAATTCATCTCAGCTCCTGTGAAAGATCAAAAAGCTGTCAACTGATGAATTGTTTATCATCATAACGCAAACATTTTATCAGTTGAGACATTTTGATATCTTGCATAGAAGCGGAGATAAATTAGGTCAAACTTGGAGACCCTTCTATTACAGGTCTTACGGTCTTTTCTTTATGATACACTGATAAATTTGG</canonical_amplicon>
		<polymorphic_amplicon>TCTTGTAGAGAGAAGTGAGTTTCAAAAACCTCTAATATAAGGGCCCTCCTATTTTGACATTGAGCCAATTCATCTCAGCTCCTGTGAAAGATCAAAMAGCTGTCAACTGATGAATTGTTTATCATCATAACGCAAACATTTTATCAGTTGAGACATTTTGATATCTTGCATAGAAGCGGAGATAAATTAGGTCAAACTTGGAGACCCTTCTATTACAGGTCTTACGGTCTTTTCTTTATGATACACTGATAAATTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34546</snp_id>
        <super_contig>c009100934.Contig1</super_contig>
        <contig_pos>96918</contig_pos>
        <strand></strand>
        <context>gtcaactgat[G/A]aattgtttat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAGCCAATTCATCTCAGCTCCTGTGAAAGATCAAAAAGCTGTCAACTGAT</left_flank>
        <right_flank>AATTGTTTATCATCATAACGCAAACATTTTATCAGTTGAGACATTTTGAT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAGATAAATCAGCTTAAAATTGGCTACCGTAGCCCAAATGTGGGCCTGGCCAACAAGCTAAACTGCTCGAAAAGCTTATATGAACGAAATTTCGAGAAAATTTTTTTTCCATATCTCCCCCCCCCCCCTTCCTCTTAAATTAGAGGTTTTACGGTAATTTAACCCATTTTCAGCTAACAGTCCTTGTCATCTGGTTGGCCATCCCTCTAGCTGTTCTGCTTGGCGATGTCATTCTACACATTGAAGGATTCGAAGCATTCTGTAATCTTCTAATTTGTCTATTCTCTACACACTCTATCATGAGTACCATTGTTATGGTTTTCACATTTCCAGCTTTTCGACGAGTGGTTTCTTGTAGAGAGAAGTGAGTTTCAAAAACCTCTAATATAAGGGCCCTCCTATTTTGACATTGAGCCAATTCATCTCAGCTCCTGTGAAAGATCAAAAAGCTGTCAACTGATGAATTGTTTATCATCATAACGCAAACATTTTATCAGTTGAGACATTTTGATATCTTGCATAGAAGCGGAGATAAATTAGGTCAAACTTGGAGACCCTTCTATTACAGGTCTTACGGTCTTTTCTTTATGATACACTGATAAATTTGGTAACTTTTCAGACCTATGTTCTCTCCCGCCACTACCATGGTCCAGCCAAGGAAAGGGTTTCAGAATTGATCGGTTTATCGAAAAATAAATTATGTGATTCAATTATAATAGAACAAATCTACACAATGAATCAAACGTCTCTAGATCAACATATCAATTTGAGAGAAAACGAAATATGATTACAGATAATCGAGTAAGCGATTCGTCATGAATTCTGAGAAAAAAAAATAGTAGGACAAAAAACTTTTGGGGGTGTTTCAAAGGAGTGGGCAGACAGGAGATTGTTCTATTTTTTATGGAGTTCCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACC</canonical>
            <polymorphic>TATTAGTTGATCACTTTTCGATATCTCTCACAATTACCGAGATAAATCAGCTTAAAATTGGCTACCGTAGCCCAAATGTGGGCCTGGCCAACAAGCTAAACTGCTCGAAAAGCTTATATGAACGAAATTTCGAGAAAATTTTTTTTCCATATCTCCCCCCCCCCCCTTCCTCTTAAATTAGAGGTTTTACGGTAATTTAACCCATTTTCAGCTAACAGTCCTTGTCATCTGGTTGGCCATCCCTCTAGCTGTTCTGCTTGGCGATGTCATTCTACACATTGAAGGATTCGAAGCATTCTGTAATCTTCTAATTTGTCTATTCTCTACACACTCTATCATGAGTACCATTGTTATGGTTTTCACATTTCCAGCTTTTCGACGAGTGGTTTCTTGTAGAGAGAAGTGAGTTTCAAAAACCTCTAATATAAGGGCCCTCCTATTTTGACATTGAGCCAATTCATCTCAGCTCCTGTGAAAGATCAAAAAGCTGTCAACTGATRAATTGTTTATCATCATAACGCAAACATTTTATCAGTTGAGACATTTTGATATCTTGCATAGAAGCGGAGATAAATTAGGTCAAACTTGGAGACCCTTCTATTACAGGTCTTACGGTCTTTTCTTTATGATACACTGATAAATTTGGTAACTTTTCAGACCTATGTTCTCTCCCGCCACTACCATGGTCCAGCCAAGGAAAGGGTTTCAGAATTGATCGGTTTATCGAAAAATAAATTATGTGATTCAATTATAATAGAACAAATCTACACAATGAATCAAACGTCTCTAGATCAACATATCAATTTGAGAGAAAACGAAATATGATTACAGATAATCGAGTAAGCGATTCGTCATGAATTCTGAGAAAAAAAAATAGTAGGACAAAAAACTTTTGGGGGTGTTTCAAAGGAGTGGGCAGACAGGAGATTGTTCTATTTTTTATGGAGTTCCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTGTAGAGAGAAGTGAGTTTCA</pcr_primer_p1>
		<pcr_primer_p2>CCAAATTTATCAGTGTATCATAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>TCTTGTAGAGAGAAGTGAGTTTCAAAAACCTCTAATATAAGGGCCCTCCTATTTTGACATTGAGCCAATTCATCTCAGCTCCTGTGAAAGATCAAAAAGCTGTCAACTGATGAATTGTTTATCATCATAACGCAAACATTTTATCAGTTGAGACATTTTGATATCTTGCATAGAAGCGGAGATAAATTAGGTCAAACTTGGAGACCCTTCTATTACAGGTCTTACGGTCTTTTCTTTATGATACACTGATAAATTTGG</canonical_amplicon>
		<polymorphic_amplicon>TCTTGTAGAGAGAAGTGAGTTTCAAAAACCTCTAATATAAGGGCCCTCCTATTTTGACATTGAGCCAATTCATCTCAGCTCCTGTGAAAGATCAAAAAGCTGTCAACTGATRAATTGTTTATCATCATAACGCAAACATTTTATCAGTTGAGACATTTTGATATCTTGCATAGAAGCGGAGATAAATTAGGTCAAACTTGGAGACCCTTCTATTACAGGTCTTACGGTCTTTTCTTTATGATACACTGATAAATTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34547</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>12786</contig_pos>
        <strand></strand>
        <context>gaatagcttt[C/A]ttttgagctg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTT</left_flank>
        <right_flank>TTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCAAATTTCGAAAATATTTAAAAATTGTAACTTTTTCGTAAATTCGGCTAGGCAAATTGTAAAAACTGTAAAATGTAGGAAATTCAATCAAGATTCATTTTGCCAATATTCCAGAATGCTTCCCTATCACCTTCAACACCTCTCGGATCCACACCATCCACAAGCTCCGCCCCTTTACCTCATTCTCCAATGAAAAACGATGAAATTCGAAAATTGAATGAGCATTTCTTCAAAATGGACTCAAATCTGAACAAAAGTCGACGAATGGCATTTACCGATTCCAGATTATTGGATATTTTCTCAGGGATGTGTAAAATGGTGAGTAGGAGAGACGCAGAGAAGCGAGAGTGTCTCGTTTCTCTGGGCGTCAAGGAGCGCGTCAACTTTAAAGGCGCATATCTCAAAAACTAGAATAGCTAGAATATTTTTGTCAACTGTGAAGATGATTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTTCTTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAACTAGCCGTTTCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCGATTGCAAAAATGATTCTGATAAAATTTCCTACATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAA</canonical>
            <polymorphic>TCTTCAAATTTCGAAAATATTTAAAAATTGTAACTTTTTCGTAAATTCGGCTAGGCAAATTGTAAAAACTGTAAAATGTAGGAAATTCAATCAAGATTCATTTTGCCAATATTCCAGAATGCTTCCCTATCACCTTCAACACCTCTCGGATCCACACCATCCACAAGCTCCGCCCCTTTACCTCATTCTCCAATGAAAAACGATGAAATTCGAAAATTGAATGAGCATTTCTTCAAAATGGACTCAAATCTGAACAAAAGTCGACGAATGGCATTTACCGATTCCAGATTATTGGATATTTTCTCAGGGATGTGTAAAATGGTGAGTAGGAGAGACGCAGAGAAGCGAGAGTGTCTCGTTTCTCTGGGCGTCAAGGAGCGCGTCAACTTTAAAGGCGCATATCTCAAAAACTAGAATAGCTAGAATATTTTTGTCAACTGTGAAGATGATTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTTMTTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAACTAGCCGTTTCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCGATTGCAAAAATGATTCTGATAAAATTTCCTACATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGATGTGTAAAATGGTGAG</pcr_primer_p1>
		<pcr_primer_p2>AAATCTTAATTTCTGGGAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>424</pcr_amplicon_size>
		<canonical_amplicon>GGGATGTGTAAAATGGTGAGTAGGAGAGACGCAGAGAAGCGAGAGTGTCTCGTTTCTCTGGGCGTCAAGGAGCGCGTCAACTTTAAAGGCGCATATCTCAAAAACTAGAATAGCTAGAATATTTTTGTCAACTGTGAAGATGATTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTTCTTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAACTAGCCGTTTCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCGATTGCAAAAATGATTCTGATAAAATTTCCTACATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTT</canonical_amplicon>
		<polymorphic_amplicon>GGGATGTGTAAAATGGTGAGTAGGAGAGACGCAGAGAAGCGAGAGTGTCTCGTTTCTCTGGGCGTCAAGGAGCGCGTCAACTTTAAAGGCGCATATCTCAAAAACTAGAATAGCTAGAATATTTTTGTCAACTGTGAAGATGATTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTTMTTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAACTAGCCGTTTCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCGATTGCAAAAATGATTCTGATAAAATTTCCTACATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34548</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>12896</contig_pos>
        <strand></strand>
        <context>aaattttgcc[G/A]attgcaaama</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCC</left_flank>
        <right_flank>ATTGCAAAAATGATTCTGATAAAATTTCCTACATTTTCCAATTTTAAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCCAGAATGCTTCCCTATCACCTTCAACACCTCTCGGATCCACACCATCCACAAGCTCCGCCCCTTTACCTCATTCTCCAATGAAAAACGATGAAATTCGAAAATTGAATGAGCATTTCTTCAAAATGGACTCAAATCTGAACAAAAGTCGACGAATGGCATTTACCGATTCCAGATTATTGGATATTTTCTCAGGGATGTGTAAAATGGTGAGTAGGAGAGACGCAGAGAAGCGAGAGTGTCTCGTTTCTCTGGGCGTCAAGGAGCGCGTCAACTTTAAAGGCGCATATCTCAAAAACTAGAATAGCTAGAATATTTTTGTCAACTGTGAAGATGATTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTTCTTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAACTAGCCGTTTCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCGATTGCAAAAATGATTCTGATAAAATTTCCTACATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAAAAATTTCCTACATTTTTCAAGTTAAAAATTTTGTAAAGCTCAAATTTCGAAAAAGTTACAGTATTTTCAAAATTCAAAAAAAAAATCAAAATTCAAAACAATTTGGACCT</canonical>
            <polymorphic>ATTCCAGAATGCTTCCCTATCACCTTCAACACCTCTCGGATCCACACCATCCACAAGCTCCGCCCCTTTACCTCATTCTCCAATGAAAAACGATGAAATTCGAAAATTGAATGAGCATTTCTTCAAAATGGACTCAAATCTGAACAAAAGTCGACGAATGGCATTTACCGATTCCAGATTATTGGATATTTTCTCAGGGATGTGTAAAATGGTGAGTAGGAGAGACGCAGAGAAGCGAGAGTGTCTCGTTTCTCTGGGCGTCAAGGAGCGCGTCAACTTTAAAGGCGCATATCTCAAAAACTAGAATAGCTAGAATATTTTTGTCAACTGTGAAGATGATTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTTCTTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAACTAGCCGTTTCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCRATTGCAAAAATGATTCTGATAAAATTTCCTACATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAAAAATTTCCTACATTTTTCAAGTTAAAAATTTTGTAAAGCTCAAATTTCGAAAAAGTTACAGTATTTTCAAAATTCAAAAAAAAAATCAAAATTCAAAACAATTTGGACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGATGTGTAAAATGGTGAG</pcr_primer_p1>
		<pcr_primer_p2>AAATCTTAATTTCTGGGAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>424</pcr_amplicon_size>
		<canonical_amplicon>GGGATGTGTAAAATGGTGAGTAGGAGAGACGCAGAGAAGCGAGAGTGTCTCGTTTCTCTGGGCGTCAAGGAGCGCGTCAACTTTAAAGGCGCATATCTCAAAAACTAGAATAGCTAGAATATTTTTGTCAACTGTGAAGATGATTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTTCTTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAACTAGCCGTTTCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCGATTGCAAAAATGATTCTGATAAAATTTCCTACATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTT</canonical_amplicon>
		<polymorphic_amplicon>GGGATGTGTAAAATGGTGAGTAGGAGAGACGCAGAGAAGCGAGAGTGTCTCGTTTCTCTGGGCGTCAAGGAGCGCGTCAACTTTAAAGGCGCATATCTCAAAAACTAGAATAGCTAGAATATTTTTGTCAACTGTGAAGATGATTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTTCTTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAACTAGCCGTTTCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCRATTGCAAAAATGATTCTGATAAAATTTCCTACATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34549</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>12905</contig_pos>
        <strand></strand>
        <context>crattgcaaa[A/C]atgattctga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCGATTGCAAA</left_flank>
        <right_flank>ATGATTCTGATAAAATTTCCTACATTTTCCAATTTTAAAAAATTTTCTAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTTCCCTATCACCTTCAACACCTCTCGGATCCACACCATCCACAAGCTCCGCCCCTTTACCTCATTCTCCAATGAAAAACGATGAAATTCGAAAATTGAATGAGCATTTCTTCAAAATGGACTCAAATCTGAACAAAAGTCGACGAATGGCATTTACCGATTCCAGATTATTGGATATTTTCTCAGGGATGTGTAAAATGGTGAGTAGGAGAGACGCAGAGAAGCGAGAGTGTCTCGTTTCTCTGGGCGTCAAGGAGCGCGTCAACTTTAAAGGCGCATATCTCAAAAACTAGAATAGCTAGAATATTTTTGTCAACTGTGAAGATGATTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTTCTTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAACTAGCCGTTTCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCGATTGCAAAAATGATTCTGATAAAATTTCCTACATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAAAAATTTCCTACATTTTTCAAGTTAAAAATTTTGTAAAGCTCAAATTTCGAAAAAGTTACAGTATTTTCAAAATTCAAAAAAAAAATCAAAATTCAAAACAATTTGGACCTATTTTTAAA</canonical>
            <polymorphic>TGCTTCCCTATCACCTTCAACACCTCTCGGATCCACACCATCCACAAGCTCCGCCCCTTTACCTCATTCTCCAATGAAAAACGATGAAATTCGAAAATTGAATGAGCATTTCTTCAAAATGGACTCAAATCTGAACAAAAGTCGACGAATGGCATTTACCGATTCCAGATTATTGGATATTTTCTCAGGGATGTGTAAAATGGTGAGTAGGAGAGACGCAGAGAAGCGAGAGTGTCTCGTTTCTCTGGGCGTCAAGGAGCGCGTCAACTTTAAAGGCGCATATCTCAAAAACTAGAATAGCTAGAATATTTTTGTCAACTGTGAAGATGATTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTTCTTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAACTAGCCGTTTCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCGATTGCAAAMATGATTCTGATAAAATTTCCTACATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAAAAATTTCCTACATTTTTCAAGTTAAAAATTTTGTAAAGCTCAAATTTCGAAAAAGTTACAGTATTTTCAAAATTCAAAAAAAAAATCAAAATTCAAAACAATTTGGACCTATTTTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGATGTGTAAAATGGTGAG</pcr_primer_p1>
		<pcr_primer_p2>AAATCTTAATTTCTGGGAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>424</pcr_amplicon_size>
		<canonical_amplicon>GGGATGTGTAAAATGGTGAGTAGGAGAGACGCAGAGAAGCGAGAGTGTCTCGTTTCTCTGGGCGTCAAGGAGCGCGTCAACTTTAAAGGCGCATATCTCAAAAACTAGAATAGCTAGAATATTTTTGTCAACTGTGAAGATGATTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTTCTTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAACTAGCCGTTTCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCGATTGCAAAAATGATTCTGATAAAATTTCCTACATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTT</canonical_amplicon>
		<polymorphic_amplicon>GGGATGTGTAAAATGGTGAGTAGGAGAGACGCAGAGAAGCGAGAGTGTCTCGTTTCTCTGGGCGTCAAGGAGCGCGTCAACTTTAAAGGCGCATATCTCAAAAACTAGAATAGCTAGAATATTTTTGTCAACTGTGAAGATGATTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTTCTTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAACTAGCCGTTTCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCGATTGCAAAMATGATTCTGATAAAATTTCCTACATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34550</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>12941</contig_pos>
        <strand></strand>
        <context>tttccaattt[T/A]aaaaaatttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTGCCGATTGCAAAAATGATTCTGATAAAATTTCCTACATTTTCCAATTT</left_flank>
        <right_flank>AAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCATCCACAAGCTCCGCCCCTTTACCTCATTCTCCAATGAAAAACGATGAAATTCGAAAATTGAATGAGCATTTCTTCAAAATGGACTCAAATCTGAACAAAAGTCGACGAATGGCATTTACCGATTCCAGATTATTGGATATTTTCTCAGGGATGTGTAAAATGGTGAGTAGGAGAGACGCAGAGAAGCGAGAGTGTCTCGTTTCTCTGGGCGTCAAGGAGCGCGTCAACTTTAAAGGCGCATATCTCAAAAACTAGAATAGCTAGAATATTTTTGTCAACTGTGAAGATGATTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTTCTTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAACTAGCCGTTTCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCGATTGCAAAAATGATTCTGATAAAATTTCCTACATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAAAAATTTCCTACATTTTTCAAGTTAAAAATTTTGTAAAGCTCAAATTTCGAAAAAGTTACAGTATTTTCAAAATTCAAAAAAAAAATCAAAATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAATTGAGCTAAAATAAT</canonical>
            <polymorphic>ACCATCCACAAGCTCCGCCCCTTTACCTCATTCTCCAATGAAAAACGATGAAATTCGAAAATTGAATGAGCATTTCTTCAAAATGGACTCAAATCTGAACAAAAGTCGACGAATGGCATTTACCGATTCCAGATTATTGGATATTTTCTCAGGGATGTGTAAAATGGTGAGTAGGAGAGACGCAGAGAAGCGAGAGTGTCTCGTTTCTCTGGGCGTCAAGGAGCGCGTCAACTTTAAAGGCGCATATCTCAAAAACTAGAATAGCTAGAATATTTTTGTCAACTGTGAAGATGATTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTTCTTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAACTAGCCGTTTCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCGATTGCAAAAATGATTCTGATAAAATTTCCTACATTTTCCAATTTWAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAAAAATTTCCTACATTTTTCAAGTTAAAAATTTTGTAAAGCTCAAATTTCGAAAAAGTTACAGTATTTTCAAAATTCAAAAAAAAAATCAAAATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAATTGAGCTAAAATAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>235 174 164 126 119 91 52 39</canonical_bands>
                <polymorphic_bands>235 174 164 143 126 119 39</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>234 110 107 94 93 91 67 52 49 40 26 21 16</canonical_bands>
                <polymorphic_bands>234 143 110 107 94 93 67 49 40 26 21 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGATGTGTAAAATGGTGAG</pcr_primer_p1>
		<pcr_primer_p2>AAATCTTAATTTCTGGGAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>424</pcr_amplicon_size>
		<canonical_amplicon>GGGATGTGTAAAATGGTGAGTAGGAGAGACGCAGAGAAGCGAGAGTGTCTCGTTTCTCTGGGCGTCAAGGAGCGCGTCAACTTTAAAGGCGCATATCTCAAAAACTAGAATAGCTAGAATATTTTTGTCAACTGTGAAGATGATTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTTCTTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAACTAGCCGTTTCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCGATTGCAAAAATGATTCTGATAAAATTTCCTACATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTT</canonical_amplicon>
		<polymorphic_amplicon>GGGATGTGTAAAATGGTGAGTAGGAGAGACGCAGAGAAGCGAGAGTGTCTCGTTTCTCTGGGCGTCAAGGAGCGCGTCAACTTTAAAGGCGCATATCTCAAAAACTAGAATAGCTAGAATATTTTTGTCAACTGTGAAGATGATTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTTCTTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAACTAGCCGTTTCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCGATTGCAAAAATGATTCTGATAAAATTTCCTACATTTTCCAATTTWAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34551</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>12971</contig_pos>
        <strand></strand>
        <context>ttttcgaaaa[C/A]gttacagagg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTCCTACATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAA</left_flank>
        <right_flank>GTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTTTTGAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTCCAATGAAAAACGATGAAATTCGAAAATTGAATGAGCATTTCTTCAAAATGGACTCAAATCTGAACAAAAGTCGACGAATGGCATTTACCGATTCCAGATTATTGGATATTTTCTCAGGGATGTGTAAAATGGTGAGTAGGAGAGACGCAGAGAAGCGAGAGTGTCTCGTTTCTCTGGGCGTCAAGGAGCGCGTCAACTTTAAAGGCGCATATCTCAAAAACTAGAATAGCTAGAATATTTTTGTCAACTGTGAAGATGATTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTTCTTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAACTAGCCGTTTCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCGATTGCAAAAATGATTCTGATAAAATTTCCTACATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAAAAATTTCCTACATTTTTCAAGTTAAAAATTTTGTAAAGCTCAAATTTCGAAAAAGTTACAGTATTTTCAAAATTCAAAAAAAAAATCAAAATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAATTGAGCTAAAATAATTTAACTAGAATAGCTAGAAATTTTCGGCTT</canonical>
            <polymorphic>TTCTCCAATGAAAAACGATGAAATTCGAAAATTGAATGAGCATTTCTTCAAAATGGACTCAAATCTGAACAAAAGTCGACGAATGGCATTTACCGATTCCAGATTATTGGATATTTTCTCAGGGATGTGTAAAATGGTGAGTAGGAGAGACGCAGAGAAGCGAGAGTGTCTCGTTTCTCTGGGCGTCAAGGAGCGCGTCAACTTTAAAGGCGCATATCTCAAAAACTAGAATAGCTAGAATATTTTTGTCAACTGTGAAGATGATTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTTCTTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAACTAGCCGTTTCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCGATTGCAAAAATGATTCTGATAAAATTTCCTACATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAAMGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAAAAATTTCCTACATTTTTCAAGTTAAAAATTTTGTAAAGCTCAAATTTCGAAAAAGTTACAGTATTTTCAAAATTCAAAAAAAAAATCAAAATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAATTGAGCTAAAATAATTTAACTAGAATAGCTAGAAATTTTCGGCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGATGTGTAAAATGGTGAG</pcr_primer_p1>
		<pcr_primer_p2>CCAAATTGTTTTGAATTTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>800</pcr_amplicon_size>
		<canonical_amplicon>GGGATGTGTAAAATGGTGAGTAGGAGAGACGCAGAGAAGCGAGAGTGTCTCGTTTCTCTGGGCGTCAAGGAGCGCGTCAACTTTAAAGGCGCATATCTCAAAAACTAGAATAGCTAGAATATTTTTGTCAACTGTGAAGATGATTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTTCTTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAACTAGCCGTTTCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCGATTGCAAAAATGATTCTGATAAAATTTCCTACATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAAAAATTTCCTACATTTTTCAAGTTAAAAATTTTGTAAAGCTCAAATTTCGAAAAAGTTACAGTATTTTCAAAATTCAAAAAAAAAATCAAAATTCAAAACAATTTGG</canonical_amplicon>
		<polymorphic_amplicon>GGGATGTGTAAAATGGTGAGTAGGAGAGACGCAGAGAAGCGAGAGTGTCTCGTTTCTCTGGGCGTCAAGGAGCGCGTCAACTTTAAAGGCGCATATCTCAAAAACTAGAATAGCTAGAATATTTTTGTCAACTGTGAAGATGATTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTTCTTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAACTAGCCGTTTCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCGATTGCAAAAATGATTCTGATAAAATTTCCTACATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAAMGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAAAAATTTCCTACATTTTTCAAGTTAAAAATTTTGTAAAGCTCAAATTTCGAAAAAGTTACAGTATTTTCAAAATTCAAAAAAAAAATCAAAATTCAAAACAATTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34552</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>13045</contig_pos>
        <strand></strand>
        <context>gctgtaactt[A/T]gtccaaaatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTT</left_flank>
        <right_flank>GTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCGACGAATGGCATTTACCGATTCCAGATTATTGGATATTTTCTCAGGGATGTGTAAAATGGTGAGTAGGAGAGACGCAGAGAAGCGAGAGTGTCTCGTTTCTCTGGGCGTCAAGGAGCGCGTCAACTTTAAAGGCGCATATCTCAAAAACTAGAATAGCTAGAATATTTTTGTCAACTGTGAAGATGATTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTTCTTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAACTAGCCGTTTCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCGATTGCAAAAATGATTCTGATAAAATTTCCTACATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAAAAATTTCCTACATTTTTCAAGTTAAAAATTTTGTAAAGCTCAAATTTCGAAAAAGTTACAGTATTTTCAAAATTCAAAAAAAAAATCAAAATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAATTGAGCTAAAATAATTTAACTAGAATAGCTAGAAATTTTCGGCTTATTGCGAAAATGATTCTCTTAAAATTTTAGATATGATGCAATTTTTAGAATTCGAGTTATGCGCCTTTAAAGTC</canonical>
            <polymorphic>GTCGACGAATGGCATTTACCGATTCCAGATTATTGGATATTTTCTCAGGGATGTGTAAAATGGTGAGTAGGAGAGACGCAGAGAAGCGAGAGTGTCTCGTTTCTCTGGGCGTCAAGGAGCGCGTCAACTTTAAAGGCGCATATCTCAAAAACTAGAATAGCTAGAATATTTTTGTCAACTGTGAAGATGATTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTTCTTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAACTAGCCGTTTCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCGATTGCAAAAATGATTCTGATAAAATTTCCTACATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTWGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAAAAATTTCCTACATTTTTCAAGTTAAAAATTTTGTAAAGCTCAAATTTCGAAAAAGTTACAGTATTTTCAAAATTCAAAAAAAAAATCAAAATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAATTGAGCTAAAATAATTTAACTAGAATAGCTAGAAATTTTCGGCTTATTGCGAAAATGATTCTCTTAAAATTTTAGATATGATGCAATTTTTAGAATTCGAGTTATGCGCCTTTAAAGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 205 171 77 44</canonical_bands>
                <polymorphic_bands>674 205 77 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAAAATTCCCAGAAATTAAGATT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCTGTAATACCCGATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>659</pcr_amplicon_size>
		<canonical_amplicon>TTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTWGTCCAAAATTGAGCTAGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34553</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>13116</contig_pos>
        <strand></strand>
        <context>taattctgta[G/T]ttyaaaaatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTA</left_flank>
        <right_flank>TTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGACGCAGAGAAGCGAGAGTGTCTCGTTTCTCTGGGCGTCAAGGAGCGCGTCAACTTTAAAGGCGCATATCTCAAAAACTAGAATAGCTAGAATATTTTTGTCAACTGTGAAGATGATTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTTCTTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAACTAGCCGTTTCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCGATTGCAAAAATGATTCTGATAAAATTTCCTACATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAAAAATTTCCTACATTTTTCAAGTTAAAAATTTTGTAAAGCTCAAATTTCGAAAAAGTTACAGTATTTTCAAAATTCAAAAAAAAAATCAAAATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAATTGAGCTAAAATAATTTAACTAGAATAGCTAGAAATTTTCGGCTTATTGCGAAAATGATTCTCTTAAAATTTTAGATATGATGCAATTTTTAGAATTCGAGTTATGCGCCTTTAAAGTCTAGGACTCCTGCCTGACTTATGCTTCCATGTCTTCATTTTAAATGCGAATAGCTCAAAAACTAGAATAGCT</canonical>
            <polymorphic>AGAGACGCAGAGAAGCGAGAGTGTCTCGTTTCTCTGGGCGTCAAGGAGCGCGTCAACTTTAAAGGCGCATATCTCAAAAACTAGAATAGCTAGAATATTTTTGTCAACTGTGAAGATGATTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTTCTTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAACTAGCCGTTTCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCGATTGCAAAAATGATTCTGATAAAATTTCCTACATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAKTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAAAAATTTCCTACATTTTTCAAGTTAAAAATTTTGTAAAGCTCAAATTTCGAAAAAGTTACAGTATTTTCAAAATTCAAAAAAAAAATCAAAATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAATTGAGCTAAAATAATTTAACTAGAATAGCTAGAAATTTTCGGCTTATTGCGAAAATGATTCTCTTAAAATTTTAGATATGATGCAATTTTTAGAATTCGAGTTATGCGCCTTTAAAGTCTAGGACTCCTGCCTGACTTATGCTTCCATGTCTTCATTTTAAATGCGAATAGCTCAAAAACTAGAATAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAAAATTCCCAGAAATTAAGATT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCTGTAATACCCGATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>659</pcr_amplicon_size>
		<canonical_amplicon>TTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCT</canonical_amplicon>
		<polymorphic_amplicon>TTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAKTTTAAAAATTTTTGATAGCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34554</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>13119</contig_pos>
        <strand></strand>
        <context>ttctgtaktt[T/C]aaaaattttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTT</left_flank>
        <right_flank>AAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACGCAGAGAAGCGAGAGTGTCTCGTTTCTCTGGGCGTCAAGGAGCGCGTCAACTTTAAAGGCGCATATCTCAAAAACTAGAATAGCTAGAATATTTTTGTCAACTGTGAAGATGATTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTTCTTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAACTAGCCGTTTCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCGATTGCAAAAATGATTCTGATAAAATTTCCTACATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAAAAATTTCCTACATTTTTCAAGTTAAAAATTTTGTAAAGCTCAAATTTCGAAAAAGTTACAGTATTTTCAAAATTCAAAAAAAAAATCAAAATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAATTGAGCTAAAATAATTTAACTAGAATAGCTAGAAATTTTCGGCTTATTGCGAAAATGATTCTCTTAAAATTTTAGATATGATGCAATTTTTAGAATTCGAGTTATGCGCCTTTAAAGTCTAGGACTCCTGCCTGACTTATGCTTCCATGTCTTCATTTTAAATGCGAATAGCTCAAAAACTAGAATAGCTAGA</canonical>
            <polymorphic>GACGCAGAGAAGCGAGAGTGTCTCGTTTCTCTGGGCGTCAAGGAGCGCGTCAACTTTAAAGGCGCATATCTCAAAAACTAGAATAGCTAGAATATTTTTGTCAACTGTGAAGATGATTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTTCTTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAACTAGCCGTTTCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCGATTGCAAAAATGATTCTGATAAAATTTCCTACATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTYAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAAAAATTTCCTACATTTTTCAAGTTAAAAATTTTGTAAAGCTCAAATTTCGAAAAAGTTACAGTATTTTCAAAATTCAAAAAAAAAATCAAAATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAATTGAGCTAAAATAATTTAACTAGAATAGCTAGAAATTTTCGGCTTATTGCGAAAATGATTCTCTTAAAATTTTAGATATGATGCAATTTTTAGAATTCGAGTTATGCGCCTTTAAAGTCTAGGACTCCTGCCTGACTTATGCTTCCATGTCTTCATTTTAAATGCGAATAGCTCAAAAACTAGAATAGCTAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>174 164 137 126 119 91 57 52 46 34</canonical_bands>
                <polymorphic_bands>290 174 137 119 91 57 52 46 34</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>110 107 94 93 91 67 56 52 49 48 48 46 41 35 26 21 16</canonical_bands>
                <polymorphic_bands>204 107 93 91 67 56 52 49 48 48 46 41 35 26 21 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAAAATTCCCAGAAATTAAGATT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCTGTAATACCCGATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>659</pcr_amplicon_size>
		<canonical_amplicon>TTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCAT</canonical_amplicon>
		<polymorphic_amplicon>TTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTYAAAAATTTTTGATAGCTCTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34555</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>13148</contig_pos>
        <strand></strand>
        <context>tcattctaaa[A/G]atagagacgc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAA</left_flank>
        <right_flank>ATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGGGCGTCAAGGAGCGCGTCAACTTTAAAGGCGCATATCTCAAAAACTAGAATAGCTAGAATATTTTTGTCAACTGTGAAGATGATTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTTCTTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAACTAGCCGTTTCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCGATTGCAAAAATGATTCTGATAAAATTTCCTACATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAAAAATTTCCTACATTTTTCAAGTTAAAAATTTTGTAAAGCTCAAATTTCGAAAAAGTTACAGTATTTTCAAAATTCAAAAAAAAAATCAAAATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAATTGAGCTAAAATAATTTAACTAGAATAGCTAGAAATTTTCGGCTTATTGCGAAAATGATTCTCTTAAAATTTTAGATATGATGCAATTTTTAGAATTCGAGTTATGCGCCTTTAAAGTCTAGGACTCCTGCCTGACTTATGCTTCCATGTCTTCATTTTAAATGCGAATAGCTCAAAAACTAGAATAGCTAGAAAGATTTAGAAAATCGGGTATTACAGAAA</canonical>
            <polymorphic>TCTGGGCGTCAAGGAGCGCGTCAACTTTAAAGGCGCATATCTCAAAAACTAGAATAGCTAGAATATTTTTGTCAACTGTGAAGATGATTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTTCTTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAACTAGCCGTTTCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCGATTGCAAAAATGATTCTGATAAAATTTCCTACATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAARATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAAAAATTTCCTACATTTTTCAAGTTAAAAATTTTGTAAAGCTCAAATTTCGAAAAAGTTACAGTATTTTCAAAATTCAAAAAAAAAATCAAAATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAATTGAGCTAAAATAATTTAACTAGAATAGCTAGAAATTTTCGGCTTATTGCGAAAATGATTCTCTTAAAATTTTAGATATGATGCAATTTTTAGAATTCGAGTTATGCGCCTTTAAAGTCTAGGACTCCTGCCTGACTTATGCTTCCATGTCTTCATTTTAAATGCGAATAGCTCAAAAACTAGAATAGCTAGAAAGATTTAGAAAATCGGGTATTACAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAAAATTCCCAGAAATTAAGATT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCTGTAATACCCGATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>659</pcr_amplicon_size>
		<canonical_amplicon>TTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAG</canonical_amplicon>
		<polymorphic_amplicon>TTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAARATAGAGACGCAGACAGCTAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34556</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>13206</contig_pos>
        <strand></strand>
        <context>gagcgcgtcg[T/A]gagygttaac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCG</left_flank>
        <right_flank>GAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGAATATTTTTGTCAACTGTGAAGATGATTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTTCTTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAACTAGCCGTTTCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCGATTGCAAAAATGATTCTGATAAAATTTCCTACATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAAAAATTTCCTACATTTTTCAAGTTAAAAATTTTGTAAAGCTCAAATTTCGAAAAAGTTACAGTATTTTCAAAATTCAAAAAAAAAATCAAAATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAATTGAGCTAAAATAATTTAACTAGAATAGCTAGAAATTTTCGGCTTATTGCGAAAATGATTCTCTTAAAATTTTAGATATGATGCAATTTTTAGAATTCGAGTTATGCGCCTTTAAAGTCTAGGACTCCTGCCTGACTTATGCTTCCATGTCTTCATTTTAAATGCGAATAGCTCAAAAACTAGAATAGCTAGAAAGATTTAGAAAATCGGGTATTACAGAAAATTGAAGACATTTCCAGCCGTTTGAAAAACACCAACTCCAACCGTTCGATTTCCGATC</canonical>
            <polymorphic>TAGAATATTTTTGTCAACTGTGAAGATGATTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTTCTTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAACTAGCCGTTTCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCGATTGCAAAAATGATTCTGATAAAATTTCCTACATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGWGAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAAAAATTTCCTACATTTTTCAAGTTAAAAATTTTGTAAAGCTCAAATTTCGAAAAAGTTACAGTATTTTCAAAATTCAAAAAAAAAATCAAAATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAATTGAGCTAAAATAATTTAACTAGAATAGCTAGAAATTTTCGGCTTATTGCGAAAATGATTCTCTTAAAATTTTAGATATGATGCAATTTTTAGAATTCGAGTTATGCGCCTTTAAAGTCTAGGACTCCTGCCTGACTTATGCTTCCATGTCTTCATTTTAAATGCGAATAGCTCAAAAACTAGAATAGCTAGAAAGATTTAGAAAATCGGGTATTACAGAAAATTGAAGACATTTCCAGCCGTTTGAAAAACACCAACTCCAACCGTTCGATTTCCGATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>468 444 27 22 22 13 4</canonical_bands>
                <polymorphic_bands>468 444 27 26 22 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAAAATTCCCAGAAATTAAGATT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCTGTAATACCCGATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>659</pcr_amplicon_size>
		<canonical_amplicon>TTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAAAAATTTCCTACATTTTTCAAGTTAAAAATTTTGTAAAGCTCAAATTTCGAAAAAGTTACAGTATTTTCAAAATTCAAAAAAAAAATCAAAATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAATTGAGCTAAAATAATTTAACTAGAATAGCTAGAAATTTTCGGCTTATTGCGAAAATGATTCTCTTAAAATTTTAGATATGATGCAATTTTTAGAATTCGAGTTATGCGCCTTTAAAGTCTAGGACTCCTGCCTGACTTATGCTTCCATGTCTTCATTTTAAATGCGAATAGCTCAAAAACTAGAATAGCTAGAAAGATTTAGAAAATCGGGTATTACAGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGWGAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAAAAATTTCCTACATTTTTCAAGTTAAAAATTTTGTAAAGCTCAAATTTCGAAAAAGTTACAGTATTTTCAAAATTCAAAAAAAAAATCAAAATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAATTGAGCTAAAATAATTTAACTAGAATAGCTAGAAATTTTCGGCTTATTGCGAAAATGATTCTCTTAAAATTTTAGATATGATGCAATTTTTAGAATTCGAGTTATGCGCCTTTAAAGTCTAGGACTCCTGCCTGACTTATGCTTCCATGTCTTCATTTTAAATGCGAATAGCTCAAAAACTAGAATAGCTAGAAAGATTTAGAAAATCGGGTATTACAGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34557</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>13210</contig_pos>
        <strand></strand>
        <context>gcgtcgwgag[T/C]gttaactttg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAG</left_flank>
        <right_flank>GTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATTTTTGTCAACTGTGAAGATGATTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTTCTTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAACTAGCCGTTTCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCGATTGCAAAAATGATTCTGATAAAATTTCCTACATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAAAAATTTCCTACATTTTTCAAGTTAAAAATTTTGTAAAGCTCAAATTTCGAAAAAGTTACAGTATTTTCAAAATTCAAAAAAAAAATCAAAATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAATTGAGCTAAAATAATTTAACTAGAATAGCTAGAAATTTTCGGCTTATTGCGAAAATGATTCTCTTAAAATTTTAGATATGATGCAATTTTTAGAATTCGAGTTATGCGCCTTTAAAGTCTAGGACTCCTGCCTGACTTATGCTTCCATGTCTTCATTTTAAATGCGAATAGCTCAAAAACTAGAATAGCTAGAAAGATTTAGAAAATCGGGTATTACAGAAAATTGAAGACATTTCCAGCCGTTTGAAAAACACCAACTCCAACCGTTCGATTTCCGATCCTAC</canonical>
            <polymorphic>ATATTTTTGTCAACTGTGAAGATGATTATGGTTAAACTTTCTACATTTTCCAATTTATAAACATTGAATAGCTTTCTTTTGAGCTGAGTTATGCGCCCCTTTGAAAGGGAGGAGAGACATAGATAACTAGCCGTTTCTTTAAAGGCGCATATCTCAAGAACTAAGGCAGCTAGAAAAATTTTGCCGATTGCAAAAATGATTCTGATAAAATTTCCTACATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAGYGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAAAAATTTCCTACATTTTTCAAGTTAAAAATTTTGTAAAGCTCAAATTTCGAAAAAGTTACAGTATTTTCAAAATTCAAAAAAAAAATCAAAATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAATTGAGCTAAAATAATTTAACTAGAATAGCTAGAAATTTTCGGCTTATTGCGAAAATGATTCTCTTAAAATTTTAGATATGATGCAATTTTTAGAATTCGAGTTATGCGCCTTTAAAGTCTAGGACTCCTGCCTGACTTATGCTTCCATGTCTTCATTTTAAATGCGAATAGCTCAAAAACTAGAATAGCTAGAAAGATTTAGAAAATCGGGTATTACAGAAAATTGAAGACATTTCCAGCCGTTTGAAAAACACCAACTCCAACCGTTCGATTTCCGATCCTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>468 444 31 22 18 13 4</canonical_bands>
                <polymorphic_bands>472 444 31 22 18 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAAAATTCCCAGAAATTAAGATT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCTGTAATACCCGATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>659</pcr_amplicon_size>
		<canonical_amplicon>TTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAAAAATTTCCTACATTTTTCAAGTTAAAAATTTTGTAAAGCTCAAATTTCGAAAAAGTTACAGTATTTTCAAAATTCAAAAAAAAAATCAAAATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAATTGAGCTAAAATAATTTAACTAGAATAGCTAGAAATTTTCGGCTTATTGCGAAAATGATTCTCTTAAAATTTTAGATATGATGCAATTTTTAGAATTCGAGTTATGCGCCTTTAAAGTCTAGGACTCCTGCCTGACTTATGCTTCCATGTCTTCATTTTAAATGCGAATAGCTCAAAAACTAGAATAGCTAGAAAGATTTAGAAAATCGGGTATTACAGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAGYGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAAAAATTTCCTACATTTTTCAAGTTAAAAATTTTGTAAAGCTCAAATTTCGAAAAAGTTACAGTATTTTCAAAATTCAAAAAAAAAATCAAAATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAATTGAGCTAAAATAATTTAACTAGAATAGCTAGAAATTTTCGGCTTATTGCGAAAATGATTCTCTTAAAATTTTAGATATGATGCAATTTTTAGAATTCGAGTTATGCGCCTTTAAAGTCTAGGACTCCTGCCTGACTTATGCTTCCATGTCTTCATTTTAAATGCGAATAGCTCAAAAACTAGAATAGCTAGAAAGATTTAGAAAATCGGGTATTACAGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34558</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>13427</contig_pos>
        <strand></strand>
        <context>tggtccaaaa[T/C]tgagctaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAA</left_flank>
        <right_flank>TGAGCTAAAATAATTTAACTAGAATAGCTAGAAATTTTCGGCTTATTGCG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAAAAATTTCCTACATTTTTCAAGTTAAAAATTTTGTAAAGCTCAAATTTCGAAAAAGTTACAGTATTTTCAAAATTCAAAAAAAAAATCAAAATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAATTGAGCTAAAATAATTTAACTAGAATAGCTAGAAATTTTCGGCTTATTGCGAAAATGATTCTCTTAAAATTTTAGATATGATGCAATTTTTAGAATTCGAGTTATGCGCCTTTAAAGTCTAGGACTCCTGCCTGACTTATGCTTCCATGTCTTCATTTTAAATGCGAATAGCTCAAAAACTAGAATAGCTAGAAAGATTTAGAAAATCGGGTATTACAGAAAATTGAAGACATTTCCAGCCGTTTGAAAAACACCAACTCCAACCGTTCGATTTCCGATCCTACCGTGGCTATCAAAAGCAGGAATACGTGATGTTGTTCAACTACGCAAACACCCTACCCGGATTTCAAGAACTATCAAATGCCAGTCAGAATTTCTTATTTCGAATTGCCTGTGGTGTGGATTTTGTGATCAGTTCGTCGTATTATACAATGTGTATTGGAACGGAATCGAATTTATTGATTAGTCAGGATGGGACGTATATTCAAATGAAGCCGTTGC</canonical>
            <polymorphic>CATTTTCCAATTTTAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAAAAATTTCCTACATTTTTCAAGTTAAAAATTTTGTAAAGCTCAAATTTCGAAAAAGTTACAGTATTTTCAAAATTCAAAAAAAAAATCAAAATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAAYTGAGCTAAAATAATTTAACTAGAATAGCTAGAAATTTTCGGCTTATTGCGAAAATGATTCTCTTAAAATTTTAGATATGATGCAATTTTTAGAATTCGAGTTATGCGCCTTTAAAGTCTAGGACTCCTGCCTGACTTATGCTTCCATGTCTTCATTTTAAATGCGAATAGCTCAAAAACTAGAATAGCTAGAAAGATTTAGAAAATCGGGTATTACAGAAAATTGAAGACATTTCCAGCCGTTTGAAAAACACCAACTCCAACCGTTCGATTTCCGATCCTACCGTGGCTATCAAAAGCAGGAATACGTGATGTTGTTCAACTACGCAAACACCCTACCCGGATTTCAAGAACTATCAAATGCCAGTCAGAATTTCTTATTTCGAATTGCCTGTGGTGTGGATTTTGTGATCAGTTCGTCGTATTATACAATGTGTATTGGAACGGAATCGAATTTATTGATTAGTCAGGATGGGACGTATATTCAAATGAAGCCGTTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>150 133 128 67 49 39 34 32 29 28 27 25 21 19 17 17 16 16 16 15 14 14 13 13 11 10 10 10 10 9 8</canonical_bands>
                <polymorphic_bands>150 133 128 67 53 49 34 32 29 28 27 25 21 19 17 17 16 16 16 15 14 13 13 11 10 10 10 10 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTCAAAACAATTTGGACCTA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCTGTAATACCCGATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>275</pcr_amplicon_size>
		<canonical_amplicon>AATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAATTGAGCTAAAATAATTTAACTAGAATAGCTAGAAATTTTCGGCTTATTGCGAAAATGATTCTCTTAAAATTTTAGATATGATGCAATTTTTAGAATTCGAGTTATGCGCCTTTAAAGTCTAGGACTCCTGCCTGACTTATGCTTCCATGTCTTCATTTTAAATGCGAATAGCTCAAAAACTAGAATAGCTAGAAAGATTTAGAAAATCGGGTATTACAGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAAYTGAGCTAAAATAATTTAACTAGAATAGCTAGAAATTTTCGGCTTATTGCGAAAATGATTCTCTTAAAATTTTAGATATGATGCAATTTTTAGAATTCGAGTTATGCGCCTTTAAAGTCTAGGACTCCTGCCTGACTTATGCTTCCATGTCTTCATTTTAAATGCGAATAGCTCAAAAACTAGAATAGCTAGAAAGATTTAGAAAATCGGGTATTACAGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34559</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>13438</contig_pos>
        <strand></strand>
        <context>tgagctaaaa[T/G]aatttaacta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAATTGAGCTAAAA</left_flank>
        <right_flank>AATTTAACTAGAATAGCTAGAAATTTTCGGCTTATTGCGAAAATGATTCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAAAAATTTCCTACATTTTTCAAGTTAAAAATTTTGTAAAGCTCAAATTTCGAAAAAGTTACAGTATTTTCAAAATTCAAAAAAAAAATCAAAATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAATTGAGCTAAAATAATTTAACTAGAATAGCTAGAAATTTTCGGCTTATTGCGAAAATGATTCTCTTAAAATTTTAGATATGATGCAATTTTTAGAATTCGAGTTATGCGCCTTTAAAGTCTAGGACTCCTGCCTGACTTATGCTTCCATGTCTTCATTTTAAATGCGAATAGCTCAAAAACTAGAATAGCTAGAAAGATTTAGAAAATCGGGTATTACAGAAAATTGAAGACATTTCCAGCCGTTTGAAAAACACCAACTCCAACCGTTCGATTTCCGATCCTACCGTGGCTATCAAAAGCAGGAATACGTGATGTTGTTCAACTACGCAAACACCCTACCCGGATTTCAAGAACTATCAAATGCCAGTCAGAATTTCTTATTTCGAATTGCCTGTGGTGTGGATTTTGTGATCAGTTCGTCGTATTATACAATGTGTATTGGAACGGAATCGAATTTATTGATTAGTCAGGATGGGACGTATATTCAAATGAAGCCGTTGCCTCTGTTGGGC</canonical>
            <polymorphic>TTTAAAAAATTTTCTAGCTCAATTTTCGAAAACGTTACAGAGGTTTGAATTTTTTAAAATTCCCAGAAATTAAGATTTTTGATCAATTTTCAAATAGCTGTAACTTAGTCCAAAATTGAGCTAGAAAATTCTCAAAAAATTAGAAATGTCGGAAATTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAAAAATTTCCTACATTTTTCAAGTTAAAAATTTTGTAAAGCTCAAATTTCGAAAAAGTTACAGTATTTTCAAAATTCAAAAAAAAAATCAAAATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAATTGAGCTAAAAKAATTTAACTAGAATAGCTAGAAATTTTCGGCTTATTGCGAAAATGATTCTCTTAAAATTTTAGATATGATGCAATTTTTAGAATTCGAGTTATGCGCCTTTAAAGTCTAGGACTCCTGCCTGACTTATGCTTCCATGTCTTCATTTTAAATGCGAATAGCTCAAAAACTAGAATAGCTAGAAAGATTTAGAAAATCGGGTATTACAGAAAATTGAAGACATTTCCAGCCGTTTGAAAAACACCAACTCCAACCGTTCGATTTCCGATCCTACCGTGGCTATCAAAAGCAGGAATACGTGATGTTGTTCAACTACGCAAACACCCTACCCGGATTTCAAGAACTATCAAATGCCAGTCAGAATTTCTTATTTCGAATTGCCTGTGGTGTGGATTTTGTGATCAGTTCGTCGTATTATACAATGTGTATTGGAACGGAATCGAATTTATTGATTAGTCAGGATGGGACGTATATTCAAATGAAGCCGTTGCCTCTGTTGGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCAAAACAATTTGGACCTA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCTGTAATACCCGATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>275</pcr_amplicon_size>
		<canonical_amplicon>AATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAATTGAGCTAAAATAATTTAACTAGAATAGCTAGAAATTTTCGGCTTATTGCGAAAATGATTCTCTTAAAATTTTAGATATGATGCAATTTTTAGAATTCGAGTTATGCGCCTTTAAAGTCTAGGACTCCTGCCTGACTTATGCTTCCATGTCTTCATTTTAAATGCGAATAGCTCAAAAACTAGAATAGCTAGAAAGATTTAGAAAATCGGGTATTACAGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAATTGAGCTAAAAKAATTTAACTAGAATAGCTAGAAATTTTCGGCTTATTGCGAAAATGATTCTCTTAAAATTTTAGATATGATGCAATTTTTAGAATTCGAGTTATGCGCCTTTAAAGTCTAGGACTCCTGCCTGACTTATGCTTCCATGTCTTCATTTTAAATGCGAATAGCTCAAAAACTAGAATAGCTAGAAAGATTTAGAAAATCGGGTATTACAGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34560</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>13593</contig_pos>
        <strand></strand>
        <context>tttaaatgcg[A/C]atagctcaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTCTAGGACTCCTGCCTGACTTATGCTTCCATGTCTTCATTTTAAATGCG</left_flank>
        <right_flank>ATAGCTCAAAAACTAGAATAGCTAGAAAGATTTAGAAAATCGGGTATTAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAAAAATTTCCTACATTTTTCAAGTTAAAAATTTTGTAAAGCTCAAATTTCGAAAAAGTTACAGTATTTTCAAAATTCAAAAAAAAAATCAAAATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAATTGAGCTAAAATAATTTAACTAGAATAGCTAGAAATTTTCGGCTTATTGCGAAAATGATTCTCTTAAAATTTTAGATATGATGCAATTTTTAGAATTCGAGTTATGCGCCTTTAAAGTCTAGGACTCCTGCCTGACTTATGCTTCCATGTCTTCATTTTAAATGCGAATAGCTCAAAAACTAGAATAGCTAGAAAGATTTAGAAAATCGGGTATTACAGAAAATTGAAGACATTTCCAGCCGTTTGAAAAACACCAACTCCAACCGTTCGATTTCCGATCCTACCGTGGCTATCAAAAGCAGGAATACGTGATGTTGTTCAACTACGCAAACACCCTACCCGGATTTCAAGAACTATCAAATGCCAGTCAGAATTTCTTATTTCGAATTGCCTGTGGTGTGGATTTTGTGATCAGTTCGTCGTATTATACAATGTGTATTGGAACGGAATCGAATTTATTGATTAGTCAGGATGGGACGTATATTCAAATGAAGCCGTTGCCTCTGTTGGGCGATGAACCGGGCACGGAGCTAATGTTCACGAAGAAGGAGGAGTTGGAGAAGTATAAGAACATTATTAAGGTGAGTAATCTGAAAATTTGGTCCCAAAAACCTGGAAAATGTTGAGGATTTTGCAGACGCGCAAAAGTTTTTAGAACAAAATATTT</canonical>
            <polymorphic>TTTCATTTTGAGTAATTCTGTAGTTTAAAAATTTTTGATAGCTCTCATTCTAAAAATAGAGACGCAGACAGCTAGAGTGTCTCGTTGCTGTGCCGCGTCGAGGAGCGCGTCGTGAGTGTTAACTTTGAAATGGCATATCTTAAAAACTAGAGGACCTAGAAAAATTTTGTAAACTACAAAAATGATGTTTAAAAAATTTCCTACATTTTTCAAGTTAAAAATTTTGTAAAGCTCAAATTTCGAAAAAGTTACAGTATTTTCAAAATTCAAAAAAAAAATCAAAATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAATTGAGCTAAAATAATTTAACTAGAATAGCTAGAAATTTTCGGCTTATTGCGAAAATGATTCTCTTAAAATTTTAGATATGATGCAATTTTTAGAATTCGAGTTATGCGCCTTTAAAGTCTAGGACTCCTGCCTGACTTATGCTTCCATGTCTTCATTTTAAATGCGMATAGCTCAAAAACTAGAATAGCTAGAAAGATTTAGAAAATCGGGTATTACAGAAAATTGAAGACATTTCCAGCCGTTTGAAAAACACCAACTCCAACCGTTCGATTTCCGATCCTACCGTGGCTATCAAAAGCAGGAATACGTGATGTTGTTCAACTACGCAAACACCCTACCCGGATTTCAAGAACTATCAAATGCCAGTCAGAATTTCTTATTTCGAATTGCCTGTGGTGTGGATTTTGTGATCAGTTCGTCGTATTATACAATGTGTATTGGAACGGAATCGAATTTATTGATTAGTCAGGATGGGACGTATATTCAAATGAAGCCGTTGCCTCTGTTGGGCGATGAACCGGGCACGGAGCTAATGTTCACGAAGAAGGAGGAGTTGGAGAAGTATAAGAACATTATTAAGGTGAGTAATCTGAAAATTTGGTCCCAAAAACCTGGAAAATGTTGAGGATTTTGCAGACGCGCAAAAGTTTTTAGAACAAAATATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCAAAACAATTTGGACCTA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCTGTAATACCCGATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>275</pcr_amplicon_size>
		<canonical_amplicon>AATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAATTGAGCTAAAATAATTTAACTAGAATAGCTAGAAATTTTCGGCTTATTGCGAAAATGATTCTCTTAAAATTTTAGATATGATGCAATTTTTAGAATTCGAGTTATGCGCCTTTAAAGTCTAGGACTCCTGCCTGACTTATGCTTCCATGTCTTCATTTTAAATGCGAATAGCTCAAAAACTAGAATAGCTAGAAAGATTTAGAAAATCGGGTATTACAGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AATTCAAAACAATTTGGACCTATTTTTAAATGGCTATAACTTGGTCCAAAATTGAGCTAAAATAATTTAACTAGAATAGCTAGAAATTTTCGGCTTATTGCGAAAATGATTCTCTTAAAATTTTAGATATGATGCAATTTTTAGAATTCGAGTTATGCGCCTTTAAAGTCTAGGACTCCTGCCTGACTTATGCTTCCATGTCTTCATTTTAAATGCGMATAGCTCAAAAACTAGAATAGCTAGAAAGATTTAGAAAATCGGGTATTACAGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34561</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>49224</contig_pos>
        <strand>+</strand>
        <context>AATTAAAATG[A/G]ATGATTATYG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATTCATATATCAAAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATG</left_flank>
        <right_flank>ATGATTATCGAATCTGTATTTTTCTAGTGTAGAATTTTATGGGCTTTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTAAATTCAAAACAATCCGACTATTTGCAGCGAAGTTATAGACTTATTGGCTACCGTAGTCCGACATTTGAAATGTTTTGGGAAAATTGGTCTGGGATACTGTAGATTTGAAGGTGTGAGCTATAAATTTAATATAACTAAATGTAGAATTTTATCAGCTATCTGAAAATATAAAAATCACATGAATCCAATTATTTTCAGCCAAGTTAGAGCTAAAAAATCAACACCTAATTTTTCAAAAATTTTCCAAAAAAAATTTTTTTTCGAATTTCTAGAAAATACAAATTTTTCGATATTTTTTTGCAAAATTTGGTACCATTCTATTGGAAATTTAATTCTCTATTCAAAAATTATACTTACGATGCAAGTACGGTAGCCGAAGGCGTTGGTCCATTGTAGATTATCAGATTGTCCTCGGCGCCAAGAGAGAAGTCGTCCAACTGAAAAATATTCATATATCAAAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATGTATGATTATCGAATCTGTATTTTTCTAGTGTAGAATTTTATGGGCTTTTCAAAAATATAGTTTTCATAAAAATTCAACAATTTTCAGTCAAGTTACAGCTAAAAAAAGATTATTTAAATTTTTTTCGTTTTTTGTAAGTTAGCTGAATTTTAAGATAATAAAATTAATTTTTATATTTTCCAATGTAAAATTTTATCTACTTTCCAAAAATTGAATTTACAGCTTTATTGCCCCATTTTCAGCAAAGTTATAGCCAAAACACCAAAAGCTATTTAAAATTTTAGAATTCGAAATTTAACACCAGATTATTTATCAATTTGTTTTTAATTTCTAAAGTAATTTGTATTAAAATTGTTGCAAATTTTTTCAGTTTTCCAATTCTGAAAAAATTATCAAAATCCAACGATTTTCAGCCAAATTACAGCCCTTAGAGTATCTCAGACAAAATTTCCCATCATAAAAATTTTTTTCCTAATCGAATCAAAGATCTTCAAAAGCACT</canonical>
            <polymorphic>TATTAAATTCAAAACAATCCGACTATTTGCAGCGAAGTTATAGACTTATTGGCTACCGTAGTCCGACATTTGAAATGTTTTGGGAAAATTGGTCTGGGATACTGTAGATTTGAAGGTGTGAGCTATAAATTTAATATAACTAAATGTAGAATTTTATCAGCTATCTGAAAATATAAAAATCACATGAATCCAATTATTTTCAGCCAAGTTAGAGCTAAAAAATCAACACCTAATTTTTCAAAAATTTTCCAAAAAAAATTTTTTTTCGAATTTCTAGAAAATACAAATTTTTCGATATTTTTTTGCAAAATTTGGTACCATTCTATTGGAAATTTAATTCTCTATTCAAAAATTATACTTACGATGCAAGTACGGTAGCCGAAGGCGTTGGTCCATTGTAGATTATCAGATTGTCCTCGGCGCCAAGAGAGAAGTCGTCCAACTGAAAAATATTCATATATCAAAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATGRATGATTATCGAATCTGTATTTTTCTAGTGTAGAATTTTATGGGCTTTTCAAAAATATAGTTTTCATAAAAATTCAACAATTTTCAGTCAAGTTACAGCTAAAAAAAGATTATTTAAATTTTTTTCGTTTTTTGTAAGTTAGCTGAATTTTAAGATAATAAAATTAATTTTTATATTTTCCAATGTAAAATTTTATCTACTTTCCAAAAATTGAATTTACAGCTTTATTGCCCCATTTTCAGCAAAGTTATAGCCAAAACACCAAAAGCTATTTAAAATTTTAGAATTCGAAATTTAACACCAGATTATTTATCAATTTGTTTTTAATTTCTAAAGTAATTTGTATTAAAATTGTTGCAAATTTTTTCAGTTTTCCAATTCTGAAAAAATTATCAAAATCCAACGATTTTCAGCCAAATTACAGCCCTTAGAGTATCTCAGACAAAATTTCCCATCATAAAAATTTTTTTCCTAATCGAATCAAAGATCTTCAAAAGCACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTCGTCCAACTGAAAAATA</pcr_primer_p1>
		<pcr_primer_p2>GGCAATAAAGCTGTAAATTCAA</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>GAAGTCGTCCAACTGAAAAATATTCATATATCAAAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATGTATGATTATCGAATCTGTATTTTTCTAGTGTAGAATTTTATGGGCTTTTCAAAAATATAGTTTTCATAAAAATTCAACAATTTTCAGTCAAGTTACAGCTAAAAAAAGATTATTTAAATTTTTTTCGTTTTTTGTAAGTTAGCTGAATTTTAAGATAATAAAATTAATTTTTATATTTTCCAATGTAAAATTTTATCTACTTTCCAAAAATTGAATTTACAGCTTTATTGCC</canonical_amplicon>
		<polymorphic_amplicon>GAAGTCGTCCAACTGAAAAATATTCATATATCAAAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATGRATGATTATCGAATCTGTATTTTTCTAGTGTAGAATTTTATGGGCTTTTCAAAAATATAGTTTTCATAAAAATTCAACAATTTTCAGTCAAGTTACAGCTAAAAAAAGATTATTTAAATTTTTTTCGTTTTTTGTAAGTTAGCTGAATTTTAAGATAATAAAATTAATTTTTATATTTTCCAATGTAAAATTTTATCTACTTTCCAAAAATTGAATTTACAGCTTTATTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34562</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>49233</contig_pos>
        <strand>+</strand>
        <context>GRATGATTAT[C/T]GAATSTGTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATCAAAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATGTATGATTAT</left_flank>
        <right_flank>GAATCTGTATTTTTCTAGTGTAGAATTTTATGGGCTTTTCAAAAATATAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAACAATCCGACTATTTGCAGCGAAGTTATAGACTTATTGGCTACCGTAGTCCGACATTTGAAATGTTTTGGGAAAATTGGTCTGGGATACTGTAGATTTGAAGGTGTGAGCTATAAATTTAATATAACTAAATGTAGAATTTTATCAGCTATCTGAAAATATAAAAATCACATGAATCCAATTATTTTCAGCCAAGTTAGAGCTAAAAAATCAACACCTAATTTTTCAAAAATTTTCCAAAAAAAATTTTTTTTCGAATTTCTAGAAAATACAAATTTTTCGATATTTTTTTGCAAAATTTGGTACCATTCTATTGGAAATTTAATTCTCTATTCAAAAATTATACTTACGATGCAAGTACGGTAGCCGAAGGCGTTGGTCCATTGTAGATTATCAGATTGTCCTCGGCGCCAAGAGAGAAGTCGTCCAACTGAAAAATATTCATATATCAAAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATGTATGATTATCGAATCTGTATTTTTCTAGTGTAGAATTTTATGGGCTTTTCAAAAATATAGTTTTCATAAAAATTCAACAATTTTCAGTCAAGTTACAGCTAAAAAAAGATTATTTAAATTTTTTTCGTTTTTTGTAAGTTAGCTGAATTTTAAGATAATAAAATTAATTTTTATATTTTCCAATGTAAAATTTTATCTACTTTCCAAAAATTGAATTTACAGCTTTATTGCCCCATTTTCAGCAAAGTTATAGCCAAAACACCAAAAGCTATTTAAAATTTTAGAATTCGAAATTTAACACCAGATTATTTATCAATTTGTTTTTAATTTCTAAAGTAATTTGTATTAAAATTGTTGCAAATTTTTTCAGTTTTCCAATTCTGAAAAAATTATCAAAATCCAACGATTTTCAGCCAAATTACAGCCCTTAGAGTATCTCAGACAAAATTTCCCATCATAAAAATTTTTTTCCTAATCGAATCAAAGATCTTCAAAAGCACTTCCGAATGC</canonical>
            <polymorphic>CAAAACAATCCGACTATTTGCAGCGAAGTTATAGACTTATTGGCTACCGTAGTCCGACATTTGAAATGTTTTGGGAAAATTGGTCTGGGATACTGTAGATTTGAAGGTGTGAGCTATAAATTTAATATAACTAAATGTAGAATTTTATCAGCTATCTGAAAATATAAAAATCACATGAATCCAATTATTTTCAGCCAAGTTAGAGCTAAAAAATCAACACCTAATTTTTCAAAAATTTTCCAAAAAAAATTTTTTTTCGAATTTCTAGAAAATACAAATTTTTCGATATTTTTTTGCAAAATTTGGTACCATTCTATTGGAAATTTAATTCTCTATTCAAAAATTATACTTACGATGCAAGTACGGTAGCCGAAGGCGTTGGTCCATTGTAGATTATCAGATTGTCCTCGGCGCCAAGAGAGAAGTCGTCCAACTGAAAAATATTCATATATCAAAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATGTATGATTATYGAATCTGTATTTTTCTAGTGTAGAATTTTATGGGCTTTTCAAAAATATAGTTTTCATAAAAATTCAACAATTTTCAGTCAAGTTACAGCTAAAAAAAGATTATTTAAATTTTTTTCGTTTTTTGTAAGTTAGCTGAATTTTAAGATAATAAAATTAATTTTTATATTTTCCAATGTAAAATTTTATCTACTTTCCAAAAATTGAATTTACAGCTTTATTGCCCCATTTTCAGCAAAGTTATAGCCAAAACACCAAAAGCTATTTAAAATTTTAGAATTCGAAATTTAACACCAGATTATTTATCAATTTGTTTTTAATTTCTAAAGTAATTTGTATTAAAATTGTTGCAAATTTTTTCAGTTTTCCAATTCTGAAAAAATTATCAAAATCCAACGATTTTCAGCCAAATTACAGCCCTTAGAGTATCTCAGACAAAATTTCCCATCATAAAAATTTTTTTCCTAATCGAATCAAAGATCTTCAAAAGCACTTCCGAATGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>279 258 216 188 33 26</canonical_bands>
                <polymorphic_bands>495 258 188 33 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGTCGTCCAACTGAAAAATA</pcr_primer_p1>
		<pcr_primer_p2>GGCAATAAAGCTGTAAATTCAA</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>GAAGTCGTCCAACTGAAAAATATTCATATATCAAAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATGTATGATTATCGAATCTGTATTTTTCTAGTGTAGAATTTTATGGGCTTTTCAAAAATATAGTTTTCATAAAAATTCAACAATTTTCAGTCAAGTTACAGCTAAAAAAAGATTATTTAAATTTTTTTCGTTTTTTGTAAGTTAGCTGAATTTTAAGATAATAAAATTAATTTTTATATTTTCCAATGTAAAATTTTATCTACTTTCCAAAAATTGAATTTACAGCTTTATTGCC</canonical_amplicon>
		<polymorphic_amplicon>GAAGTCGTCCAACTGAAAAATATTCATATATCAAAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATGTATGATTATYGAATCTGTATTTTTCTAGTGTAGAATTTTATGGGCTTTTCAAAAATATAGTTTTCATAAAAATTCAACAATTTTCAGTCAAGTTACAGCTAAAAAAAGATTATTTAAATTTTTTTCGTTTTTTGTAAGTTAGCTGAATTTTAAGATAATAAAATTAATTTTTATATTTTCCAATGTAAAATTTTATCTACTTTCCAAAAATTGAATTTACAGCTTTATTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34563</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>49238</contig_pos>
        <strand>+</strand>
        <context>ATTATYGAAT[C/G]TGTATTTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATGTATGATTATCGAAT</left_flank>
        <right_flank>TGTATTTTTCTAGTGTAGAATTTTATGGGCTTTTCAAAAATATAGTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATCCGACTATTTGCAGCGAAGTTATAGACTTATTGGCTACCGTAGTCCGACATTTGAAATGTTTTGGGAAAATTGGTCTGGGATACTGTAGATTTGAAGGTGTGAGCTATAAATTTAATATAACTAAATGTAGAATTTTATCAGCTATCTGAAAATATAAAAATCACATGAATCCAATTATTTTCAGCCAAGTTAGAGCTAAAAAATCAACACCTAATTTTTCAAAAATTTTCCAAAAAAAATTTTTTTTCGAATTTCTAGAAAATACAAATTTTTCGATATTTTTTTGCAAAATTTGGTACCATTCTATTGGAAATTTAATTCTCTATTCAAAAATTATACTTACGATGCAAGTACGGTAGCCGAAGGCGTTGGTCCATTGTAGATTATCAGATTGTCCTCGGCGCCAAGAGAGAAGTCGTCCAACTGAAAAATATTCATATATCAAAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATGTATGATTATCGAATCTGTATTTTTCTAGTGTAGAATTTTATGGGCTTTTCAAAAATATAGTTTTCATAAAAATTCAACAATTTTCAGTCAAGTTACAGCTAAAAAAAGATTATTTAAATTTTTTTCGTTTTTTGTAAGTTAGCTGAATTTTAAGATAATAAAATTAATTTTTATATTTTCCAATGTAAAATTTTATCTACTTTCCAAAAATTGAATTTACAGCTTTATTGCCCCATTTTCAGCAAAGTTATAGCCAAAACACCAAAAGCTATTTAAAATTTTAGAATTCGAAATTTAACACCAGATTATTTATCAATTTGTTTTTAATTTCTAAAGTAATTTGTATTAAAATTGTTGCAAATTTTTTCAGTTTTCCAATTCTGAAAAAATTATCAAAATCCAACGATTTTCAGCCAAATTACAGCCCTTAGAGTATCTCAGACAAAATTTCCCATCATAAAAATTTTTTTCCTAATCGAATCAAAGATCTTCAAAAGCACTTCCGAATGCTCCAT</canonical>
            <polymorphic>CAATCCGACTATTTGCAGCGAAGTTATAGACTTATTGGCTACCGTAGTCCGACATTTGAAATGTTTTGGGAAAATTGGTCTGGGATACTGTAGATTTGAAGGTGTGAGCTATAAATTTAATATAACTAAATGTAGAATTTTATCAGCTATCTGAAAATATAAAAATCACATGAATCCAATTATTTTCAGCCAAGTTAGAGCTAAAAAATCAACACCTAATTTTTCAAAAATTTTCCAAAAAAAATTTTTTTTCGAATTTCTAGAAAATACAAATTTTTCGATATTTTTTTGCAAAATTTGGTACCATTCTATTGGAAATTTAATTCTCTATTCAAAAATTATACTTACGATGCAAGTACGGTAGCCGAAGGCGTTGGTCCATTGTAGATTATCAGATTGTCCTCGGCGCCAAGAGAGAAGTCGTCCAACTGAAAAATATTCATATATCAAAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATGTATGATTATCGAATSTGTATTTTTCTAGTGTAGAATTTTATGGGCTTTTCAAAAATATAGTTTTCATAAAAATTCAACAATTTTCAGTCAAGTTACAGCTAAAAAAAGATTATTTAAATTTTTTTCGTTTTTTGTAAGTTAGCTGAATTTTAAGATAATAAAATTAATTTTTATATTTTCCAATGTAAAATTTTATCTACTTTCCAAAAATTGAATTTACAGCTTTATTGCCCCATTTTCAGCAAAGTTATAGCCAAAACACCAAAAGCTATTTAAAATTTTAGAATTCGAAATTTAACACCAGATTATTTATCAATTTGTTTTTAATTTCTAAAGTAATTTGTATTAAAATTGTTGCAAATTTTTTCAGTTTTCCAATTCTGAAAAAATTATCAAAATCCAACGATTTTCAGCCAAATTACAGCCCTTAGAGTATCTCAGACAAAATTTCCCATCATAAAAATTTTTTTCCTAATCGAATCAAAGATCTTCAAAAGCACTTCCGAATGCTCCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>467 324 172 37</canonical_bands>
                <polymorphic_bands>791 172 37</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>467 324 172 37</canonical_bands>
                <polymorphic_bands>791 172 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGTCGTCCAACTGAAAAATA</pcr_primer_p1>
		<pcr_primer_p2>GGCAATAAAGCTGTAAATTCAA</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>GAAGTCGTCCAACTGAAAAATATTCATATATCAAAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATGTATGATTATCGAATCTGTATTTTTCTAGTGTAGAATTTTATGGGCTTTTCAAAAATATAGTTTTCATAAAAATTCAACAATTTTCAGTCAAGTTACAGCTAAAAAAAGATTATTTAAATTTTTTTCGTTTTTTGTAAGTTAGCTGAATTTTAAGATAATAAAATTAATTTTTATATTTTCCAATGTAAAATTTTATCTACTTTCCAAAAATTGAATTTACAGCTTTATTGCC</canonical_amplicon>
		<polymorphic_amplicon>GAAGTCGTCCAACTGAAAAATATTCATATATCAAAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATGTATGATTATCGAATSTGTATTTTTCTAGTGTAGAATTTTATGGGCTTTTCAAAAATATAGTTTTCATAAAAATTCAACAATTTTCAGTCAAGTTACAGCTAAAAAAAGATTATTTAAATTTTTTTCGTTTTTTGTAAGTTAGCTGAATTTTAAGATAATAAAATTAATTTTTATATTTTCCAATGTAAAATTTTATCTACTTTCCAAAAATTGAATTTACAGCTTTATTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34564</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>49252</contig_pos>
        <strand>+</strand>
        <context>ATTTTTCTAG[G/T]GTAGAATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTAATTAGAGTAATTAAAATGTATGATTATCGAATCTGTATTTTTCTAG</left_flank>
        <right_flank>GTAGAATTTTATGGGCTTTTCAAAAATATAGTTTTCATAAAAATTCAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAGCGAAGTTATAGACTTATTGGCTACCGTAGTCCGACATTTGAAATGTTTTGGGAAAATTGGTCTGGGATACTGTAGATTTGAAGGTGTGAGCTATAAATTTAATATAACTAAATGTAGAATTTTATCAGCTATCTGAAAATATAAAAATCACATGAATCCAATTATTTTCAGCCAAGTTAGAGCTAAAAAATCAACACCTAATTTTTCAAAAATTTTCCAAAAAAAATTTTTTTTCGAATTTCTAGAAAATACAAATTTTTCGATATTTTTTTGCAAAATTTGGTACCATTCTATTGGAAATTTAATTCTCTATTCAAAAATTATACTTACGATGCAAGTACGGTAGCCGAAGGCGTTGGTCCATTGTAGATTATCAGATTGTCCTCGGCGCCAAGAGAGAAGTCGTCCAACTGAAAAATATTCATATATCAAAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATGTATGATTATCGAATCTGTATTTTTCTAGTGTAGAATTTTATGGGCTTTTCAAAAATATAGTTTTCATAAAAATTCAACAATTTTCAGTCAAGTTACAGCTAAAAAAAGATTATTTAAATTTTTTTCGTTTTTTGTAAGTTAGCTGAATTTTAAGATAATAAAATTAATTTTTATATTTTCCAATGTAAAATTTTATCTACTTTCCAAAAATTGAATTTACAGCTTTATTGCCCCATTTTCAGCAAAGTTATAGCCAAAACACCAAAAGCTATTTAAAATTTTAGAATTCGAAATTTAACACCAGATTATTTATCAATTTGTTTTTAATTTCTAAAGTAATTTGTATTAAAATTGTTGCAAATTTTTTCAGTTTTCCAATTCTGAAAAAATTATCAAAATCCAACGATTTTCAGCCAAATTACAGCCCTTAGAGTATCTCAGACAAAATTTCCCATCATAAAAATTTTTTTCCTAATCGAATCAAAGATCTTCAAAAGCACTTCCGAATGCTCCATTTTCAGTTTATTCT</canonical>
            <polymorphic>GCAGCGAAGTTATAGACTTATTGGCTACCGTAGTCCGACATTTGAAATGTTTTGGGAAAATTGGTCTGGGATACTGTAGATTTGAAGGTGTGAGCTATAAATTTAATATAACTAAATGTAGAATTTTATCAGCTATCTGAAAATATAAAAATCACATGAATCCAATTATTTTCAGCCAAGTTAGAGCTAAAAAATCAACACCTAATTTTTCAAAAATTTTCCAAAAAAAATTTTTTTTCGAATTTCTAGAAAATACAAATTTTTCGATATTTTTTTGCAAAATTTGGTACCATTCTATTGGAAATTTAATTCTCTATTCAAAAATTATACTTACGATGCAAGTACGGTAGCCGAAGGCGTTGGTCCATTGTAGATTATCAGATTGTCCTCGGCGCCAAGAGAGAAGTCGTCCAACTGAAAAATATTCATATATCAAAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATGTATGATTATCGAATCTGTATTTTTCTAGKGTAGAATTTTATGGGCTTTTCAAAAATATAGTTTTCATAAAAATTCAACAATTTTCAGTCAAGTTACAGCTAAAAAAAGATTATTTAAATTTTTTTCGTTTTTTGTAAGTTAGCTGAATTTTAAGATAATAAAATTAATTTTTATATTTTCCAATGTAAAATTTTATCTACTTTCCAAAAATTGAATTTACAGCTTTATTGCCCCATTTTCAGCAAAGTTATAGCCAAAACACCAAAAGCTATTTAAAATTTTAGAATTCGAAATTTAACACCAGATTATTTATCAATTTGTTTTTAATTTCTAAAGTAATTTGTATTAAAATTGTTGCAAATTTTTTCAGTTTTCCAATTCTGAAAAAATTATCAAAATCCAACGATTTTCAGCCAAATTACAGCCCTTAGAGTATCTCAGACAAAATTTCCCATCATAAAAATTTTTTTCCTAATCGAATCAAAGATCTTCAAAAGCACTTCCGAATGCTCCATTTTCAGTTTATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>301 231 199 90 62 46 39 30 2</canonical_bands>
                <polymorphic_bands>532 199 90 62 46 39 30 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGTCGTCCAACTGAAAAATA</pcr_primer_p1>
		<pcr_primer_p2>GGCAATAAAGCTGTAAATTCAA</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>GAAGTCGTCCAACTGAAAAATATTCATATATCAAAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATGTATGATTATCGAATCTGTATTTTTCTAGTGTAGAATTTTATGGGCTTTTCAAAAATATAGTTTTCATAAAAATTCAACAATTTTCAGTCAAGTTACAGCTAAAAAAAGATTATTTAAATTTTTTTCGTTTTTTGTAAGTTAGCTGAATTTTAAGATAATAAAATTAATTTTTATATTTTCCAATGTAAAATTTTATCTACTTTCCAAAAATTGAATTTACAGCTTTATTGCC</canonical_amplicon>
		<polymorphic_amplicon>GAAGTCGTCCAACTGAAAAATATTCATATATCAAAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATGTATGATTATCGAATCTGTATTTTTCTAGKGTAGAATTTTATGGGCTTTTCAAAAATATAGTTTTCATAAAAATTCAACAATTTTCAGTCAAGTTACAGCTAAAAAAAGATTATTTAAATTTTTTTCGTTTTTTGTAAGTTAGCTGAATTTTAAGATAATAAAATTAATTTTTATATTTTCCAATGTAAAATTTTATCTACTTTCCAAAAATTGAATTTACAGCTTTATTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34565</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>49331</contig_pos>
        <strand>+</strand>
        <context>gctaaaaaAA[A/G]ATTATTTAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGTTTTCATAAAAATTCAACAATTTTCAGTCAAGTTACAGCTAAAAAAA</left_flank>
        <right_flank>ATTATTTAAATTTTTTTCGTTTTTTGTAAGTTAGCTGAATTTTAAGATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGAAGGTGTGAGCTATAAATTTAATATAACTAAATGTAGAATTTTATCAGCTATCTGAAAATATAAAAATCACATGAATCCAATTATTTTCAGCCAAGTTAGAGCTAAAAAATCAACACCTAATTTTTCAAAAATTTTCCAAAAAAAATTTTTTTTCGAATTTCTAGAAAATACAAATTTTTCGATATTTTTTTGCAAAATTTGGTACCATTCTATTGGAAATTTAATTCTCTATTCAAAAATTATACTTACGATGCAAGTACGGTAGCCGAAGGCGTTGGTCCATTGTAGATTATCAGATTGTCCTCGGCGCCAAGAGAGAAGTCGTCCAACTGAAAAATATTCATATATCAAAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATGTATGATTATCGAATCTGTATTTTTCTAGTGTAGAATTTTATGGGCTTTTCAAAAATATAGTTTTCATAAAAATTCAACAATTTTCAGTCAAGTTACAGCTAAAAAAAGATTATTTAAATTTTTTTCGTTTTTTGTAAGTTAGCTGAATTTTAAGATAATAAAATTAATTTTTATATTTTCCAATGTAAAATTTTATCTACTTTCCAAAAATTGAATTTACAGCTTTATTGCCCCATTTTCAGCAAAGTTATAGCCAAAACACCAAAAGCTATTTAAAATTTTAGAATTCGAAATTTAACACCAGATTATTTATCAATTTGTTTTTAATTTCTAAAGTAATTTGTATTAAAATTGTTGCAAATTTTTTCAGTTTTCCAATTCTGAAAAAATTATCAAAATCCAACGATTTTCAGCCAAATTACAGCCCTTAGAGTATCTCAGACAAAATTTCCCATCATAAAAATTTTTTTCCTAATCGAATCAAAGATCTTCAAAAGCACTTCCGAATGCTCCATTTTCAGTTTATTCTAAAAATTTAAGCCAAGAAAAAAATATGAATTTCCCAATTTTTTCAATTTTTCTAATTATTTGTTTGGGACGACTTTCCA</canonical>
            <polymorphic>ATTTGAAGGTGTGAGCTATAAATTTAATATAACTAAATGTAGAATTTTATCAGCTATCTGAAAATATAAAAATCACATGAATCCAATTATTTTCAGCCAAGTTAGAGCTAAAAAATCAACACCTAATTTTTCAAAAATTTTCCAAAAAAAATTTTTTTTCGAATTTCTAGAAAATACAAATTTTTCGATATTTTTTTGCAAAATTTGGTACCATTCTATTGGAAATTTAATTCTCTATTCAAAAATTATACTTACGATGCAAGTACGGTAGCCGAAGGCGTTGGTCCATTGTAGATTATCAGATTGTCCTCGGCGCCAAGAGAGAAGTCGTCCAACTGAAAAATATTCATATATCAAAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATGTATGATTATCGAATCTGTATTTTTCTAGTGTAGAATTTTATGGGCTTTTCAAAAATATAGTTTTCATAAAAATTCAACAATTTTCAGTCAAGTTACAGCTAAAAAAARATTATTTAAATTTTTTTCGTTTTTTGTAAGTTAGCTGAATTTTAAGATAATAAAATTAATTTTTATATTTTCCAATGTAAAATTTTATCTACTTTCCAAAAATTGAATTTACAGCTTTATTGCCCCATTTTCAGCAAAGTTATAGCCAAAACACCAAAAGCTATTTAAAATTTTAGAATTCGAAATTTAACACCAGATTATTTATCAATTTGTTTTTAATTTCTAAAGTAATTTGTATTAAAATTGTTGCAAATTTTTTCAGTTTTCCAATTCTGAAAAAATTATCAAAATCCAACGATTTTCAGCCAAATTACAGCCCTTAGAGTATCTCAGACAAAATTTCCCATCATAAAAATTTTTTTCCTAATCGAATCAAAGATCTTCAAAAGCACTTCCGAATGCTCCATTTTCAGTTTATTCTAAAAATTTAAGCCAAGAAAAAAATATGAATTTCCCAATTTTTTCAATTTTTCTAATTATTTGTTTGGGACGACTTTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTCGTCCAACTGAAAAATA</pcr_primer_p1>
		<pcr_primer_p2>GGCAATAAAGCTGTAAATTCAA</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>GAAGTCGTCCAACTGAAAAATATTCATATATCAAAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATGTATGATTATCGAATCTGTATTTTTCTAGTGTAGAATTTTATGGGCTTTTCAAAAATATAGTTTTCATAAAAATTCAACAATTTTCAGTCAAGTTACAGCTAAAAAAAGATTATTTAAATTTTTTTCGTTTTTTGTAAGTTAGCTGAATTTTAAGATAATAAAATTAATTTTTATATTTTCCAATGTAAAATTTTATCTACTTTCCAAAAATTGAATTTACAGCTTTATTGCC</canonical_amplicon>
		<polymorphic_amplicon>GAAGTCGTCCAACTGAAAAATATTCATATATCAAAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATGTATGATTATCGAATCTGTATTTTTCTAGTGTAGAATTTTATGGGCTTTTCAAAAATATAGTTTTCATAAAAATTCAACAATTTTCAGTCAAGTTACAGCTAAAAAAARATTATTTAAATTTTTTTCGTTTTTTGTAAGTTAGCTGAATTTTAAGATAATAAAATTAATTTTTATATTTTCCAATGTAAAATTTTATCTACTTTCCAAAAATTGAATTTACAGCTTTATTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34566</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>49429</contig_pos>
        <strand>+</strand>
        <context>TCTACTTTCC[A/G]AAAATTGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATAAAATTAATTTTTATATTTTCCAATGTAAAATTTTATCTACTTTCC</left_flank>
        <right_flank>AAAATTGAATTTACAGCTTTATTGCCCCATTTTCAGCAAAGTTATAGCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTAGAGCTAAAAAATCAACACCTAATTTTTCAAAAATTTTCCAAAAAAAATTTTTTTTCGAATTTCTAGAAAATACAAATTTTTCGATATTTTTTTGCAAAATTTGGTACCATTCTATTGGAAATTTAATTCTCTATTCAAAAATTATACTTACGATGCAAGTACGGTAGCCGAAGGCGTTGGTCCATTGTAGATTATCAGATTGTCCTCGGCGCCAAGAGAGAAGTCGTCCAACTGAAAAATATTCATATATCAAAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATGTATGATTATCGAATCTGTATTTTTCTAGTGTAGAATTTTATGGGCTTTTCAAAAATATAGTTTTCATAAAAATTCAACAATTTTCAGTCAAGTTACAGCTAAAAAAAGATTATTTAAATTTTTTTCGTTTTTTGTAAGTTAGCTGAATTTTAAGATAATAAAATTAATTTTTATATTTTCCAATGTAAAATTTTATCTACTTTCCAAAAATTGAATTTACAGCTTTATTGCCCCATTTTCAGCAAAGTTATAGCCAAAACACCAAAAGCTATTTAAAATTTTAGAATTCGAAATTTAACACCAGATTATTTATCAATTTGTTTTTAATTTCTAAAGTAATTTGTATTAAAATTGTTGCAAATTTTTTCAGTTTTCCAATTCTGAAAAAATTATCAAAATCCAACGATTTTCAGCCAAATTACAGCCCTTAGAGTATCTCAGACAAAATTTCCCATCATAAAAATTTTTTTCCTAATCGAATCAAAGATCTTCAAAAGCACTTCCGAATGCTCCATTTTCAGTTTATTCTAAAAATTTAAGCCAAGAAAAAAATATGAATTTCCCAATTTTTTCAATTTTTCTAATTATTTGTTTGGGACGACTTTCCAAATCGGACCCACTGATAATTGATGTCGAGGTGAAGTGCGCCTTTAATCAGCTCTACTGGTGTGGAAAAATGCACATTTTTGAGCACGATAATTAGTGA</canonical>
            <polymorphic>AAGTTAGAGCTAAAAAATCAACACCTAATTTTTCAAAAATTTTCCAAAAAAAATTTTTTTTCGAATTTCTAGAAAATACAAATTTTTCGATATTTTTTTGCAAAATTTGGTACCATTCTATTGGAAATTTAATTCTCTATTCAAAAATTATACTTACGATGCAAGTACGGTAGCCGAAGGCGTTGGTCCATTGTAGATTATCAGATTGTCCTCGGCGCCAAGAGAGAAGTCGTCCAACTGAAAAATATTCATATATCAAAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATGTATGATTATCGAATCTGTATTTTTCTAGTGTAGAATTTTATGGGCTTTTCAAAAATATAGTTTTCATAAAAATTCAACAATTTTCAGTCAAGTTACAGCTAAAAAAAGATTATTTAAATTTTTTTCGTTTTTTGTAAGTTAGCTGAATTTTAAGATAATAAAATTAATTTTTATATTTTCCAATGTAAAATTTTATCTACTTTCCRAAAATTGAATTTACAGCTTTATTGCCCCATTTTCAGCAAAGTTATAGCCAAAACACCAAAAGCTATTTAAAATTTTAGAATTCGAAATTTAACACCAGATTATTTATCAATTTGTTTTTAATTTCTAAAGTAATTTGTATTAAAATTGTTGCAAATTTTTTCAGTTTTCCAATTCTGAAAAAATTATCAAAATCCAACGATTTTCAGCCAAATTACAGCCCTTAGAGTATCTCAGACAAAATTTCCCATCATAAAAATTTTTTTCCTAATCGAATCAAAGATCTTCAAAAGCACTTCCGAATGCTCCATTTTCAGTTTATTCTAAAAATTTAAGCCAAGAAAAAAATATGAATTTCCCAATTTTTTCAATTTTTCTAATTATTTGTTTGGGACGACTTTCCAAATCGGACCCACTGATAATTGATGTCGAGGTGAAGTGCGCCTTTAATCAGCTCTACTGGTGTGGAAAAATGCACATTTTTGAGCACGATAATTAGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTCGTCCAACTGAAAAATA</pcr_primer_p1>
		<pcr_primer_p2>TTTGGCTATAACTTTGCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>GAAGTCGTCCAACTGAAAAATATTCATATATCAAAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATGTATGATTATCGAATCTGTATTTTTCTAGTGTAGAATTTTATGGGCTTTTCAAAAATATAGTTTTCATAAAAATTCAACAATTTTCAGTCAAGTTACAGCTAAAAAAAGATTATTTAAATTTTTTTCGTTTTTTGTAAGTTAGCTGAATTTTAAGATAATAAAATTAATTTTTATATTTTCCAATGTAAAATTTTATCTACTTTCCAAAAATTGAATTTACAGCTTTATTGCCCCATTTTCAGCAAAGTTATAGCCAAA</canonical_amplicon>
		<polymorphic_amplicon>GAAGTCGTCCAACTGAAAAATATTCATATATCAAAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATGTATGATTATCGAATCTGTATTTTTCTAGTGTAGAATTTTATGGGCTTTTCAAAAATATAGTTTTCATAAAAATTCAACAATTTTCAGTCAAGTTACAGCTAAAAAAAGATTATTTAAATTTTTTTCGTTTTTTGTAAGTTAGCTGAATTTTAAGATAATAAAATTAATTTTTATATTTTCCAATGTAAAATTTTATCTACTTTCCRAAAATTGAATTTACAGCTTTATTGCCCCATTTTCAGCAAAGTTATAGCCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34567</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>49598</contig_pos>
        <strand>+</strand>
        <context>TTTCAGTTTT[C/T]MAATTCTGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATTTCTAAAGTAATTTGTATTAAAATTGTTGCAAATTTTTTCAGTTTT</left_flank>
        <right_flank>CAATTCTGAAAAAATTATCAAAATCCAACGATTTTCAGCCAAATTACAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAGCCGAAGGCGTTGGTCCATTGTAGATTATCAGATTGTCCTCGGCGCCAAGAGAGAAGTCGTCCAACTGAAAAATATTCATATATCAAAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATGTATGATTATCGAATCTGTATTTTTCTAGTGTAGAATTTTATGGGCTTTTCAAAAATATAGTTTTCATAAAAATTCAACAATTTTCAGTCAAGTTACAGCTAAAAAAAGATTATTTAAATTTTTTTCGTTTTTTGTAAGTTAGCTGAATTTTAAGATAATAAAATTAATTTTTATATTTTCCAATGTAAAATTTTATCTACTTTCCAAAAATTGAATTTACAGCTTTATTGCCCCATTTTCAGCAAAGTTATAGCCAAAACACCAAAAGCTATTTAAAATTTTAGAATTCGAAATTTAACACCAGATTATTTATCAATTTGTTTTTAATTTCTAAAGTAATTTGTATTAAAATTGTTGCAAATTTTTTCAGTTTTCCAATTCTGAAAAAATTATCAAAATCCAACGATTTTCAGCCAAATTACAGCCCTTAGAGTATCTCAGACAAAATTTCCCATCATAAAAATTTTTTTCCTAATCGAATCAAAGATCTTCAAAAGCACTTCCGAATGCTCCATTTTCAGTTTATTCTAAAAATTTAAGCCAAGAAAAAAATATGAATTTCCCAATTTTTTCAATTTTTCTAATTATTTGTTTGGGACGACTTTCCAAATCGGACCCACTGATAATTGATGTCGAGGTGAAGTGCGCCTTTAATCAGCTCTACTGGTGTGGAAAAATGCACATTTTTGAGCACGATAATTAGTGAGTTAATTGGGCATAATTGGAAAATAACTTCGAAAAAATGTTGAAAACGCTGTAACTTTTTATATTTTGCTGCTAACTTAATGAAAACAAATGCAATATATTTGCCTTGTCCTGAGCTTCAAAATGAGCCCAAACACGACTAGGCTCCTCCCACTTTGATTTTTCCGGCG</canonical>
            <polymorphic>GTAGCCGAAGGCGTTGGTCCATTGTAGATTATCAGATTGTCCTCGGCGCCAAGAGAGAAGTCGTCCAACTGAAAAATATTCATATATCAAAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATGTATGATTATCGAATCTGTATTTTTCTAGTGTAGAATTTTATGGGCTTTTCAAAAATATAGTTTTCATAAAAATTCAACAATTTTCAGTCAAGTTACAGCTAAAAAAAGATTATTTAAATTTTTTTCGTTTTTTGTAAGTTAGCTGAATTTTAAGATAATAAAATTAATTTTTATATTTTCCAATGTAAAATTTTATCTACTTTCCAAAAATTGAATTTACAGCTTTATTGCCCCATTTTCAGCAAAGTTATAGCCAAAACACCAAAAGCTATTTAAAATTTTAGAATTCGAAATTTAACACCAGATTATTTATCAATTTGTTTTTAATTTCTAAAGTAATTTGTATTAAAATTGTTGCAAATTTTTTCAGTTTTYCAATTCTGAAAAAATTATCAAAATCCAACGATTTTCAGCCAAATTACAGCCCTTAGAGTATCTCAGACAAAATTTCCCATCATAAAAATTTTTTTCCTAATCGAATCAAAGATCTTCAAAAGCACTTCCGAATGCTCCATTTTCAGTTTATTCTAAAAATTTAAGCCAAGAAAAAAATATGAATTTCCCAATTTTTTCAATTTTTCTAATTATTTGTTTGGGACGACTTTCCAAATCGGACCCACTGATAATTGATGTCGAGGTGAAGTGCGCCTTTAATCAGCTCTACTGGTGTGGAAAAATGCACATTTTTGAGCACGATAATTAGTGAGTTAATTGGGCATAATTGGAAAATAACTTCGAAAAAATGTTGAAAACGCTGTAACTTTTTATATTTTGCTGCTAACTTAATGAAAACAAATGCAATATATTTGCCTTGTCCTGAGCTTCAAAATGAGCCCAAACACGACTAGGCTCCTCCCACTTTGATTTTTCCGGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTATAGCCAAAACACCAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGATCTTTGATTCGATTAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGTTATAGCCAAAACACCAAAAGCTATTTAAAATTTTAGAATTCGAAATTTAACACCAGATTATTTATCAATTTGTTTTTAATTTCTAAAGTAATTTGTATTAAAATTGTTGCAAATTTTTTCAGTTTTCCAATTCTGAAAAAATTATCAAAATCCAACGATTTTCAGCCAAATTACAGCCCTTAGAGTATCTCAGACAAAATTTCCCATCATAAAAATTTTTTTCCTAATCGAATCAAAGATCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>AGTTATAGCCAAAACACCAAAAGCTATTTAAAATTTTAGAATTCGAAATTTAACACCAGATTATTTATCAATTTGTTTTTAATTTCTAAAGTAATTTGTATTAAAATTGTTGCAAATTTTTTCAGTTTTYCAATTCTGAAAAAATTATCAAAATCCAACGATTTTCAGCCAAATTACAGCCCTTAGAGTATCTCAGACAAAATTTCCCATCATAAAAATTTTTTTCCTAATCGAATCAAAGATCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34568</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>49599</contig_pos>
        <strand>+</strand>
        <context>TTCAGTTTTY[A/C]AATTCTGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTTCTAAAGTAATTTGTATTAAAATTGTTGCAAATTTTTTCAGTTTTC</left_flank>
        <right_flank>AATTCTGAAAAAATTATCAAAATCCAACGATTTTCAGCCAAATTACAGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGCCGAAGGCGTTGGTCCATTGTAGATTATCAGATTGTCCTCGGCGCCAAGAGAGAAGTCGTCCAACTGAAAAATATTCATATATCAAAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATGTATGATTATCGAATCTGTATTTTTCTAGTGTAGAATTTTATGGGCTTTTCAAAAATATAGTTTTCATAAAAATTCAACAATTTTCAGTCAAGTTACAGCTAAAAAAAGATTATTTAAATTTTTTTCGTTTTTTGTAAGTTAGCTGAATTTTAAGATAATAAAATTAATTTTTATATTTTCCAATGTAAAATTTTATCTACTTTCCAAAAATTGAATTTACAGCTTTATTGCCCCATTTTCAGCAAAGTTATAGCCAAAACACCAAAAGCTATTTAAAATTTTAGAATTCGAAATTTAACACCAGATTATTTATCAATTTGTTTTTAATTTCTAAAGTAATTTGTATTAAAATTGTTGCAAATTTTTTCAGTTTTCCAATTCTGAAAAAATTATCAAAATCCAACGATTTTCAGCCAAATTACAGCCCTTAGAGTATCTCAGACAAAATTTCCCATCATAAAAATTTTTTTCCTAATCGAATCAAAGATCTTCAAAAGCACTTCCGAATGCTCCATTTTCAGTTTATTCTAAAAATTTAAGCCAAGAAAAAAATATGAATTTCCCAATTTTTTCAATTTTTCTAATTATTTGTTTGGGACGACTTTCCAAATCGGACCCACTGATAATTGATGTCGAGGTGAAGTGCGCCTTTAATCAGCTCTACTGGTGTGGAAAAATGCACATTTTTGAGCACGATAATTAGTGAGTTAATTGGGCATAATTGGAAAATAACTTCGAAAAAATGTTGAAAACGCTGTAACTTTTTATATTTTGCTGCTAACTTAATGAAAACAAATGCAATATATTTGCCTTGTCCTGAGCTTCAAAATGAGCCCAAACACGACTAGGCTCCTCCCACTTTGATTTTTCCGGCGC</canonical>
            <polymorphic>TAGCCGAAGGCGTTGGTCCATTGTAGATTATCAGATTGTCCTCGGCGCCAAGAGAGAAGTCGTCCAACTGAAAAATATTCATATATCAAAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATGTATGATTATCGAATCTGTATTTTTCTAGTGTAGAATTTTATGGGCTTTTCAAAAATATAGTTTTCATAAAAATTCAACAATTTTCAGTCAAGTTACAGCTAAAAAAAGATTATTTAAATTTTTTTCGTTTTTTGTAAGTTAGCTGAATTTTAAGATAATAAAATTAATTTTTATATTTTCCAATGTAAAATTTTATCTACTTTCCAAAAATTGAATTTACAGCTTTATTGCCCCATTTTCAGCAAAGTTATAGCCAAAACACCAAAAGCTATTTAAAATTTTAGAATTCGAAATTTAACACCAGATTATTTATCAATTTGTTTTTAATTTCTAAAGTAATTTGTATTAAAATTGTTGCAAATTTTTTCAGTTTTCMAATTCTGAAAAAATTATCAAAATCCAACGATTTTCAGCCAAATTACAGCCCTTAGAGTATCTCAGACAAAATTTCCCATCATAAAAATTTTTTTCCTAATCGAATCAAAGATCTTCAAAAGCACTTCCGAATGCTCCATTTTCAGTTTATTCTAAAAATTTAAGCCAAGAAAAAAATATGAATTTCCCAATTTTTTCAATTTTTCTAATTATTTGTTTGGGACGACTTTCCAAATCGGACCCACTGATAATTGATGTCGAGGTGAAGTGCGCCTTTAATCAGCTCTACTGGTGTGGAAAAATGCACATTTTTGAGCACGATAATTAGTGAGTTAATTGGGCATAATTGGAAAATAACTTCGAAAAAATGTTGAAAACGCTGTAACTTTTTATATTTTGCTGCTAACTTAATGAAAACAAATGCAATATATTTGCCTTGTCCTGAGCTTCAAAATGAGCCCAAACACGACTAGGCTCCTCCCACTTTGATTTTTCCGGCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTATAGCCAAAACACCAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGATCTTTGATTCGATTAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGTTATAGCCAAAACACCAAAAGCTATTTAAAATTTTAGAATTCGAAATTTAACACCAGATTATTTATCAATTTGTTTTTAATTTCTAAAGTAATTTGTATTAAAATTGTTGCAAATTTTTTCAGTTTTCCAATTCTGAAAAAATTATCAAAATCCAACGATTTTCAGCCAAATTACAGCCCTTAGAGTATCTCAGACAAAATTTCCCATCATAAAAATTTTTTTCCTAATCGAATCAAAGATCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>AGTTATAGCCAAAACACCAAAAGCTATTTAAAATTTTAGAATTCGAAATTTAACACCAGATTATTTATCAATTTGTTTTTAATTTCTAAAGTAATTTGTATTAAAATTGTTGCAAATTTTTTCAGTTTTCMAATTCTGAAAAAATTATCAAAATCCAACGATTTTCAGCCAAATTACAGCCCTTAGAGTATCTCAGACAAAATTTCCCATCATAAAAATTTTTTTCCTAATCGAATCAAAGATCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34569</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>49654</contig_pos>
        <strand>+</strand>
        <context>ACAGCCCTTA[C/G]AGTATCTCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTGAAAAAATTATCAAAATCCAACGATTTTCAGCCAAATTACAGCCCTTA</left_flank>
        <right_flank>AGTATCTCAGACAAAATTTCCCATCATAAAAATTTTTTTCCTAATCGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGTCGTCCAACTGAAAAATATTCATATATCAAAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATGTATGATTATCGAATCTGTATTTTTCTAGTGTAGAATTTTATGGGCTTTTCAAAAATATAGTTTTCATAAAAATTCAACAATTTTCAGTCAAGTTACAGCTAAAAAAAGATTATTTAAATTTTTTTCGTTTTTTGTAAGTTAGCTGAATTTTAAGATAATAAAATTAATTTTTATATTTTCCAATGTAAAATTTTATCTACTTTCCAAAAATTGAATTTACAGCTTTATTGCCCCATTTTCAGCAAAGTTATAGCCAAAACACCAAAAGCTATTTAAAATTTTAGAATTCGAAATTTAACACCAGATTATTTATCAATTTGTTTTTAATTTCTAAAGTAATTTGTATTAAAATTGTTGCAAATTTTTTCAGTTTTCCAATTCTGAAAAAATTATCAAAATCCAACGATTTTCAGCCAAATTACAGCCCTTAGAGTATCTCAGACAAAATTTCCCATCATAAAAATTTTTTTCCTAATCGAATCAAAGATCTTCAAAAGCACTTCCGAATGCTCCATTTTCAGTTTATTCTAAAAATTTAAGCCAAGAAAAAAATATGAATTTCCCAATTTTTTCAATTTTTCTAATTATTTGTTTGGGACGACTTTCCAAATCGGACCCACTGATAATTGATGTCGAGGTGAAGTGCGCCTTTAATCAGCTCTACTGGTGTGGAAAAATGCACATTTTTGAGCACGATAATTAGTGAGTTAATTGGGCATAATTGGAAAATAACTTCGAAAAAATGTTGAAAACGCTGTAACTTTTTATATTTTGCTGCTAACTTAATGAAAACAAATGCAATATATTTGCCTTGTCCTGAGCTTCAAAATGAGCCCAAACACGACTAGGCTCCTCCCACTTTGATTTTTCCGGCGCGTCGCGGTCTCTCATCAAGGCGAATTCGAATGTTCTATTAATTTCTAAACTTAAA</canonical>
            <polymorphic>GAAGTCGTCCAACTGAAAAATATTCATATATCAAAAGTTAATTAGGGTTTAATTAGAGTAATTAAAATGTATGATTATCGAATCTGTATTTTTCTAGTGTAGAATTTTATGGGCTTTTCAAAAATATAGTTTTCATAAAAATTCAACAATTTTCAGTCAAGTTACAGCTAAAAAAAGATTATTTAAATTTTTTTCGTTTTTTGTAAGTTAGCTGAATTTTAAGATAATAAAATTAATTTTTATATTTTCCAATGTAAAATTTTATCTACTTTCCAAAAATTGAATTTACAGCTTTATTGCCCCATTTTCAGCAAAGTTATAGCCAAAACACCAAAAGCTATTTAAAATTTTAGAATTCGAAATTTAACACCAGATTATTTATCAATTTGTTTTTAATTTCTAAAGTAATTTGTATTAAAATTGTTGCAAATTTTTTCAGTTTTCCAATTCTGAAAAAATTATCAAAATCCAACGATTTTCAGCCAAATTACAGCCCTTASAGTATCTCAGACAAAATTTCCCATCATAAAAATTTTTTTCCTAATCGAATCAAAGATCTTCAAAAGCACTTCCGAATGCTCCATTTTCAGTTTATTCTAAAAATTTAAGCCAAGAAAAAAATATGAATTTCCCAATTTTTTCAATTTTTCTAATTATTTGTTTGGGACGACTTTCCAAATCGGACCCACTGATAATTGATGTCGAGGTGAAGTGCGCCTTTAATCAGCTCTACTGGTGTGGAAAAATGCACATTTTTGAGCACGATAATTAGTGAGTTAATTGGGCATAATTGGAAAATAACTTCGAAAAAATGTTGAAAACGCTGTAACTTTTTATATTTTGCTGCTAACTTAATGAAAACAAATGCAATATATTTGCCTTGTCCTGAGCTTCAAAATGAGCCCAAACACGACTAGGCTCCTCCCACTTTGATTTTTCCGGCGCGTCGCGGTCTCTCATCAAGGCGAATTCGAATGTTCTATTAATTTCTAAACTTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>496 380 114 10</canonical_bands>
                <polymorphic_bands>506 380 114</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTATAGCCAAAACACCAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGATCTTTGATTCGATTAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGTTATAGCCAAAACACCAAAAGCTATTTAAAATTTTAGAATTCGAAATTTAACACCAGATTATTTATCAATTTGTTTTTAATTTCTAAAGTAATTTGTATTAAAATTGTTGCAAATTTTTTCAGTTTTCCAATTCTGAAAAAATTATCAAAATCCAACGATTTTCAGCCAAATTACAGCCCTTAGAGTATCTCAGACAAAATTTCCCATCATAAAAATTTTTTTCCTAATCGAATCAAAGATCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>AGTTATAGCCAAAACACCAAAAGCTATTTAAAATTTTAGAATTCGAAATTTAACACCAGATTATTTATCAATTTGTTTTTAATTTCTAAAGTAATTTGTATTAAAATTGTTGCAAATTTTTTCAGTTTTCCAATTCTGAAAAAATTATCAAAATCCAACGATTTTCAGCCAAATTACAGCCCTTASAGTATCTCAGACAAAATTTCCCATCATAAAAATTTTTTTCCTAATCGAATCAAAGATCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34570</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>85055</contig_pos>
        <strand>+</strand>
        <context>GGGCTAAAAA[C/T]GACCAGAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGATTTTAGGCTTAAAATGAGCCAAGAATCACACAATTTGGGCTAAAAA</left_flank>
        <right_flank>GACCAGAATTTGGCTCTATTTCAATATGAAAAGCTCGAGAAATGACCTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACCCTGAAATTCCCTTTAAAATAGCTGTAATTTCGAATTTTAGTCTGAAAATTGGATATTTCGACTCCCCAGAGCTTGAAAATCGCTCAGAAACTTAGTTCTGTCTATCTTAGCTTGAGAATCCTCAAAAAATGACTTTAAAATGATCAATTTTGGCCCAAAATAGCTCAAAATCGGACTTTTGTGGTCTGAAATCGCCGTTGAAACGTCTAGAATCCGTCTGAAATCTATCTGAAATTGGCAAAACTGGCTGAAAAAATCGGAAAATCCGGCTTTTGAGCACTTTTTTTTATCATTTTTAGCCCCAGAATTGCTCATTTTCTGCCTGAAAAACATCCAAAATGACGTTTTTCTGAATTGAACAGCTCGAAAAATGACACCAAAAATGTCTGGAAATCGTCTGAAATTGACTGAAAAGGTTGAAAATCCCAGACGTCAGCCTCCCACTCGATTTTAGGCTTAAAATGAGCCAAGAATCACACAATTTGGGCTAAAAATGACCAGAATTTGGCTCTATTTCAATATGAAAAGCTCGAGAAATGACCTAAAAATAACTGAAATTGGCTAAAAAGTCTGAAAATTCCAGATTTCAGCCTGATTTTTTACTCTGAAACCTACAAATTTAGGCTGGAAATTATGCCAAAATCACTTTTTCTGACCTCAAAACCTTGAAAAACGACCCGAAAATGTCTGAAAATCGTCTGAAAAATCCCGAATTCTGGCTTAAAATCGCTCAAATCTTCCAGATGGACCTAACCGACAACAAGTTCCTGCGCAAAAACTACTCTGAAGACGTCGTTCGCGAGATCCAAGAGGCCCAGGACGGCATCTCGCTCGTCGAGTCCGAATGGTCGCAACTCGAAGAGGATCGACGTCTCCTGCGAAAGATCTTCCCTCGCGGTGACGCCAAAATCGTGCTCCCCTGTAACCTGCAACGTCTCATCTGGAACGCTCAGAAGATCTTCAAAGTGGACCTTCGGAAGCCAGTGAACCTCTCG</canonical>
            <polymorphic>TGACCCTGAAATTCCCTTTAAAATAGCTGTAATTTCGAATTTTAGTCTGAAAATTGGATATTTCGACTCCCCAGAGCTTGAAAATCGCTCAGAAACTTAGTTCTGTCTATCTTAGCTTGAGAATCCTCAAAAAATGACTTTAAAATGATCAATTTTGGCCCAAAATAGCTCAAAATCGGACTTTTGTGGTCTGAAATCGCCGTTGAAACGTCTAGAATCCGTCTGAAATCTATCTGAAATTGGCAAAACTGGCTGAAAAAATCGGAAAATCCGGCTTTTGAGCACTTTTTTTTATCATTTTTAGCCCCAGAATTGCTCATTTTCTGCCTGAAAAACATCCAAAATGACGTTTTTCTGAATTGAACAGCTCGAAAAATGACACCAAAAATGTCTGGAAATCGTCTGAAATTGACTGAAAAGGTTGAAAATCCCAGACGTCAGCCTCCCACTCGATTTTAGGCTTAAAATGAGCCAAGAATCACACAATTTGGGCTAAAAAYGACCAGAATTTGGCTCTATTTCAATATGAAAAGCTCGAGAAATGACCTAAAAATAACTGAAATTGGCTAAAAAGTCTGAAAATTCCAGATTTCAGCCTGATTTTTTACTCTGAAACCTACAAATTTAGGCTGGAAATTATGCCAAAATCACTTTTTCTGACCTCAAAACCTTGAAAAACGACCCGAAAATGTCTGAAAATCGTCTGAAAAATCCCGAATTCTGGCTTAAAATCGCTCAAATCTTCCAGATGGACCTAACCGACAACAAGTTCCTGCGCAAAAACTACTCTGAAGACGTCGTTCGCGAGATCCAAGAGGCCCAGGACGGCATCTCGCTCGTCGAGTCCGAATGGTCGCAACTCGAAGAGGATCGACGTCTCCTGCGAAAGATCTTCCCTCGCGGTGACGCCAAAATCGTGCTCCCCTGTAACCTGCAACGTCTCATCTGGAACGCTCAGAAGATCTTCAAAGTGGACCTTCGGAAGCCAGTGAACCTCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATGACGTTTTTCTGAATTG</pcr_primer_p1>
		<pcr_primer_p2>TGGAATTTTCAGACTTTTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAATGACGTTTTTCTGAATTGAACAGCTCGAAAAATGACACCAAAAATGTCTGGAAATCGTCTGAAATTGACTGAAAAGGTTGAAAATCCCAGACGTCAGCCTCCCACTCGATTTTAGGCTTAAAATGAGCCAAGAATCACACAATTTGGGCTAAAAATGACCAGAATTTGGCTCTATTTCAATATGAAAAGCTCGAGAAATGACCTAAAAATAACTGAAATTGGCTAAAAAGTCTGAAAATTCCA</canonical_amplicon>
		<polymorphic_amplicon>AAAATGACGTTTTTCTGAATTGAACAGCTCGAAAAATGACACCAAAAATGTCTGGAAATCGTCTGAAATTGACTGAAAAGGTTGAAAATCCCAGACGTCAGCCTCCCACTCGATTTTAGGCTTAAAATGAGCCAAGAATCACACAATTTGGGCTAAAAAYGACCAGAATTTGGCTCTATTTCAATATGAAAAGCTCGAGAAATGACCTAAAAATAACTGAAATTGGCTAAAAAGTCTGAAAATTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34571</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>85080</contig_pos>
        <strand>+</strand>
        <context>TCTATTTCAA[C/T]RTGAAAAGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAATCACACAATTTGGGCTAAAAATGACCAGAATTTGGCTCTATTTCAA</left_flank>
        <right_flank>ATGAAAAGCTCGAGAAATGACCTAAAAATAACTGAAATTGGCTAAAAAGT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTGTAATTTCGAATTTTAGTCTGAAAATTGGATATTTCGACTCCCCAGAGCTTGAAAATCGCTCAGAAACTTAGTTCTGTCTATCTTAGCTTGAGAATCCTCAAAAAATGACTTTAAAATGATCAATTTTGGCCCAAAATAGCTCAAAATCGGACTTTTGTGGTCTGAAATCGCCGTTGAAACGTCTAGAATCCGTCTGAAATCTATCTGAAATTGGCAAAACTGGCTGAAAAAATCGGAAAATCCGGCTTTTGAGCACTTTTTTTTATCATTTTTAGCCCCAGAATTGCTCATTTTCTGCCTGAAAAACATCCAAAATGACGTTTTTCTGAATTGAACAGCTCGAAAAATGACACCAAAAATGTCTGGAAATCGTCTGAAATTGACTGAAAAGGTTGAAAATCCCAGACGTCAGCCTCCCACTCGATTTTAGGCTTAAAATGAGCCAAGAATCACACAATTTGGGCTAAAAATGACCAGAATTTGGCTCTATTTCAATATGAAAAGCTCGAGAAATGACCTAAAAATAACTGAAATTGGCTAAAAAGTCTGAAAATTCCAGATTTCAGCCTGATTTTTTACTCTGAAACCTACAAATTTAGGCTGGAAATTATGCCAAAATCACTTTTTCTGACCTCAAAACCTTGAAAAACGACCCGAAAATGTCTGAAAATCGTCTGAAAAATCCCGAATTCTGGCTTAAAATCGCTCAAATCTTCCAGATGGACCTAACCGACAACAAGTTCCTGCGCAAAAACTACTCTGAAGACGTCGTTCGCGAGATCCAAGAGGCCCAGGACGGCATCTCGCTCGTCGAGTCCGAATGGTCGCAACTCGAAGAGGATCGACGTCTCCTGCGAAAGATCTTCCCTCGCGGTGACGCCAAAATCGTGCTCCCCTGTAACCTGCAACGTCTCATCTGGAACGCTCAGAAGATCTTCAAAGTGGACCTTCGGAAGCCAGTGAACCTCTCGCCCCTCCACGTCATCAACGGCGTTC</canonical>
            <polymorphic>GCTGTAATTTCGAATTTTAGTCTGAAAATTGGATATTTCGACTCCCCAGAGCTTGAAAATCGCTCAGAAACTTAGTTCTGTCTATCTTAGCTTGAGAATCCTCAAAAAATGACTTTAAAATGATCAATTTTGGCCCAAAATAGCTCAAAATCGGACTTTTGTGGTCTGAAATCGCCGTTGAAACGTCTAGAATCCGTCTGAAATCTATCTGAAATTGGCAAAACTGGCTGAAAAAATCGGAAAATCCGGCTTTTGAGCACTTTTTTTTATCATTTTTAGCCCCAGAATTGCTCATTTTCTGCCTGAAAAACATCCAAAATGACGTTTTTCTGAATTGAACAGCTCGAAAAATGACACCAAAAATGTCTGGAAATCGTCTGAAATTGACTGAAAAGGTTGAAAATCCCAGACGTCAGCCTCCCACTCGATTTTAGGCTTAAAATGAGCCAAGAATCACACAATTTGGGCTAAAAATGACCAGAATTTGGCTCTATTTCAAYATGAAAAGCTCGAGAAATGACCTAAAAATAACTGAAATTGGCTAAAAAGTCTGAAAATTCCAGATTTCAGCCTGATTTTTTACTCTGAAACCTACAAATTTAGGCTGGAAATTATGCCAAAATCACTTTTTCTGACCTCAAAACCTTGAAAAACGACCCGAAAATGTCTGAAAATCGTCTGAAAAATCCCGAATTCTGGCTTAAAATCGCTCAAATCTTCCAGATGGACCTAACCGACAACAAGTTCCTGCGCAAAAACTACTCTGAAGACGTCGTTCGCGAGATCCAAGAGGCCCAGGACGGCATCTCGCTCGTCGAGTCCGAATGGTCGCAACTCGAAGAGGATCGACGTCTCCTGCGAAAGATCTTCCCTCGCGGTGACGCCAAAATCGTGCTCCCCTGTAACCTGCAACGTCTCATCTGGAACGCTCAGAAGATCTTCAAAGTGGACCTTCGGAAGCCAGTGAACCTCTCGCCCCTCCACGTCATCAACGGCGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATGACGTTTTTCTGAATTG</pcr_primer_p1>
		<pcr_primer_p2>TGGAATTTTCAGACTTTTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAATGACGTTTTTCTGAATTGAACAGCTCGAAAAATGACACCAAAAATGTCTGGAAATCGTCTGAAATTGACTGAAAAGGTTGAAAATCCCAGACGTCAGCCTCCCACTCGATTTTAGGCTTAAAATGAGCCAAGAATCACACAATTTGGGCTAAAAATGACCAGAATTTGGCTCTATTTCAATATGAAAAGCTCGAGAAATGACCTAAAAATAACTGAAATTGGCTAAAAAGTCTGAAAATTCCA</canonical_amplicon>
		<polymorphic_amplicon>AAAATGACGTTTTTCTGAATTGAACAGCTCGAAAAATGACACCAAAAATGTCTGGAAATCGTCTGAAATTGACTGAAAAGGTTGAAAATCCCAGACGTCAGCCTCCCACTCGATTTTAGGCTTAAAATGAGCCAAGAATCACACAATTTGGGCTAAAAATGACCAGAATTTGGCTCTATTTCAAYATGAAAAGCTCGAGAAATGACCTAAAAATAACTGAAATTGGCTAAAAAGTCTGAAAATTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34572</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>85081</contig_pos>
        <strand>+</strand>
        <context>CTATTTCAAY[A/G]TGAAAAGCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATCACACAATTTGGGCTAAAAATGACCAGAATTTGGCTCTATTTCAAT</left_flank>
        <right_flank>TGAAAAGCTCGAGAAATGACCTAAAAATAACTGAAATTGGCTAAAAAGTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTAATTTCGAATTTTAGTCTGAAAATTGGATATTTCGACTCCCCAGAGCTTGAAAATCGCTCAGAAACTTAGTTCTGTCTATCTTAGCTTGAGAATCCTCAAAAAATGACTTTAAAATGATCAATTTTGGCCCAAAATAGCTCAAAATCGGACTTTTGTGGTCTGAAATCGCCGTTGAAACGTCTAGAATCCGTCTGAAATCTATCTGAAATTGGCAAAACTGGCTGAAAAAATCGGAAAATCCGGCTTTTGAGCACTTTTTTTTATCATTTTTAGCCCCAGAATTGCTCATTTTCTGCCTGAAAAACATCCAAAATGACGTTTTTCTGAATTGAACAGCTCGAAAAATGACACCAAAAATGTCTGGAAATCGTCTGAAATTGACTGAAAAGGTTGAAAATCCCAGACGTCAGCCTCCCACTCGATTTTAGGCTTAAAATGAGCCAAGAATCACACAATTTGGGCTAAAAATGACCAGAATTTGGCTCTATTTCAATATGAAAAGCTCGAGAAATGACCTAAAAATAACTGAAATTGGCTAAAAAGTCTGAAAATTCCAGATTTCAGCCTGATTTTTTACTCTGAAACCTACAAATTTAGGCTGGAAATTATGCCAAAATCACTTTTTCTGACCTCAAAACCTTGAAAAACGACCCGAAAATGTCTGAAAATCGTCTGAAAAATCCCGAATTCTGGCTTAAAATCGCTCAAATCTTCCAGATGGACCTAACCGACAACAAGTTCCTGCGCAAAAACTACTCTGAAGACGTCGTTCGCGAGATCCAAGAGGCCCAGGACGGCATCTCGCTCGTCGAGTCCGAATGGTCGCAACTCGAAGAGGATCGACGTCTCCTGCGAAAGATCTTCCCTCGCGGTGACGCCAAAATCGTGCTCCCCTGTAACCTGCAACGTCTCATCTGGAACGCTCAGAAGATCTTCAAAGTGGACCTTCGGAAGCCAGTGAACCTCTCGCCCCTCCACGTCATCAACGGCGTTCG</canonical>
            <polymorphic>CTGTAATTTCGAATTTTAGTCTGAAAATTGGATATTTCGACTCCCCAGAGCTTGAAAATCGCTCAGAAACTTAGTTCTGTCTATCTTAGCTTGAGAATCCTCAAAAAATGACTTTAAAATGATCAATTTTGGCCCAAAATAGCTCAAAATCGGACTTTTGTGGTCTGAAATCGCCGTTGAAACGTCTAGAATCCGTCTGAAATCTATCTGAAATTGGCAAAACTGGCTGAAAAAATCGGAAAATCCGGCTTTTGAGCACTTTTTTTTATCATTTTTAGCCCCAGAATTGCTCATTTTCTGCCTGAAAAACATCCAAAATGACGTTTTTCTGAATTGAACAGCTCGAAAAATGACACCAAAAATGTCTGGAAATCGTCTGAAATTGACTGAAAAGGTTGAAAATCCCAGACGTCAGCCTCCCACTCGATTTTAGGCTTAAAATGAGCCAAGAATCACACAATTTGGGCTAAAAATGACCAGAATTTGGCTCTATTTCAATRTGAAAAGCTCGAGAAATGACCTAAAAATAACTGAAATTGGCTAAAAAGTCTGAAAATTCCAGATTTCAGCCTGATTTTTTACTCTGAAACCTACAAATTTAGGCTGGAAATTATGCCAAAATCACTTTTTCTGACCTCAAAACCTTGAAAAACGACCCGAAAATGTCTGAAAATCGTCTGAAAAATCCCGAATTCTGGCTTAAAATCGCTCAAATCTTCCAGATGGACCTAACCGACAACAAGTTCCTGCGCAAAAACTACTCTGAAGACGTCGTTCGCGAGATCCAAGAGGCCCAGGACGGCATCTCGCTCGTCGAGTCCGAATGGTCGCAACTCGAAGAGGATCGACGTCTCCTGCGAAAGATCTTCCCTCGCGGTGACGCCAAAATCGTGCTCCCCTGTAACCTGCAACGTCTCATCTGGAACGCTCAGAAGATCTTCAAAGTGGACCTTCGGAAGCCAGTGAACCTCTCGCCCCTCCACGTCATCAACGGCGTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATGACGTTTTTCTGAATTG</pcr_primer_p1>
		<pcr_primer_p2>TGGAATTTTCAGACTTTTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAATGACGTTTTTCTGAATTGAACAGCTCGAAAAATGACACCAAAAATGTCTGGAAATCGTCTGAAATTGACTGAAAAGGTTGAAAATCCCAGACGTCAGCCTCCCACTCGATTTTAGGCTTAAAATGAGCCAAGAATCACACAATTTGGGCTAAAAATGACCAGAATTTGGCTCTATTTCAATATGAAAAGCTCGAGAAATGACCTAAAAATAACTGAAATTGGCTAAAAAGTCTGAAAATTCCA</canonical_amplicon>
		<polymorphic_amplicon>AAAATGACGTTTTTCTGAATTGAACAGCTCGAAAAATGACACCAAAAATGTCTGGAAATCGTCTGAAATTGACTGAAAAGGTTGAAAATCCCAGACGTCAGCCTCCCACTCGATTTTAGGCTTAAAATGAGCCAAGAATCACACAATTTGGGCTAAAAATGACCAGAATTTGGCTCTATTTCAATRTGAAAAGCTCGAGAAATGACCTAAAAATAACTGAAATTGGCTAAAAAGTCTGAAAATTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34573</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>85107</contig_pos>
        <strand>+</strand>
        <context>ATGACCTAAA[A/C]ATRACTGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACCAGAATTTGGCTCTATTTCAATATGAAAAGCTCGAGAAATGACCTAAA</left_flank>
        <right_flank>ATAACTGAAATTGGCTAAAAAGTCTGAAAATTCCAGATTTCAGCCTGATT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGGATATTTCGACTCCCCAGAGCTTGAAAATCGCTCAGAAACTTAGTTCTGTCTATCTTAGCTTGAGAATCCTCAAAAAATGACTTTAAAATGATCAATTTTGGCCCAAAATAGCTCAAAATCGGACTTTTGTGGTCTGAAATCGCCGTTGAAACGTCTAGAATCCGTCTGAAATCTATCTGAAATTGGCAAAACTGGCTGAAAAAATCGGAAAATCCGGCTTTTGAGCACTTTTTTTTATCATTTTTAGCCCCAGAATTGCTCATTTTCTGCCTGAAAAACATCCAAAATGACGTTTTTCTGAATTGAACAGCTCGAAAAATGACACCAAAAATGTCTGGAAATCGTCTGAAATTGACTGAAAAGGTTGAAAATCCCAGACGTCAGCCTCCCACTCGATTTTAGGCTTAAAATGAGCCAAGAATCACACAATTTGGGCTAAAAATGACCAGAATTTGGCTCTATTTCAATATGAAAAGCTCGAGAAATGACCTAAAAATAACTGAAATTGGCTAAAAAGTCTGAAAATTCCAGATTTCAGCCTGATTTTTTACTCTGAAACCTACAAATTTAGGCTGGAAATTATGCCAAAATCACTTTTTCTGACCTCAAAACCTTGAAAAACGACCCGAAAATGTCTGAAAATCGTCTGAAAAATCCCGAATTCTGGCTTAAAATCGCTCAAATCTTCCAGATGGACCTAACCGACAACAAGTTCCTGCGCAAAAACTACTCTGAAGACGTCGTTCGCGAGATCCAAGAGGCCCAGGACGGCATCTCGCTCGTCGAGTCCGAATGGTCGCAACTCGAAGAGGATCGACGTCTCCTGCGAAAGATCTTCCCTCGCGGTGACGCCAAAATCGTGCTCCCCTGTAACCTGCAACGTCTCATCTGGAACGCTCAGAAGATCTTCAAAGTGGACCTTCGGAAGCCAGTGAACCTCTCGCCCCTCCACGTCATCAACGGCGTTCGGGAGCTGTCGAAGAAGCTGATCATCG</canonical>
            <polymorphic>ATTGGATATTTCGACTCCCCAGAGCTTGAAAATCGCTCAGAAACTTAGTTCTGTCTATCTTAGCTTGAGAATCCTCAAAAAATGACTTTAAAATGATCAATTTTGGCCCAAAATAGCTCAAAATCGGACTTTTGTGGTCTGAAATCGCCGTTGAAACGTCTAGAATCCGTCTGAAATCTATCTGAAATTGGCAAAACTGGCTGAAAAAATCGGAAAATCCGGCTTTTGAGCACTTTTTTTTATCATTTTTAGCCCCAGAATTGCTCATTTTCTGCCTGAAAAACATCCAAAATGACGTTTTTCTGAATTGAACAGCTCGAAAAATGACACCAAAAATGTCTGGAAATCGTCTGAAATTGACTGAAAAGGTTGAAAATCCCAGACGTCAGCCTCCCACTCGATTTTAGGCTTAAAATGAGCCAAGAATCACACAATTTGGGCTAAAAATGACCAGAATTTGGCTCTATTTCAATATGAAAAGCTCGAGAAATGACCTAAAMATAACTGAAATTGGCTAAAAAGTCTGAAAATTCCAGATTTCAGCCTGATTTTTTACTCTGAAACCTACAAATTTAGGCTGGAAATTATGCCAAAATCACTTTTTCTGACCTCAAAACCTTGAAAAACGACCCGAAAATGTCTGAAAATCGTCTGAAAAATCCCGAATTCTGGCTTAAAATCGCTCAAATCTTCCAGATGGACCTAACCGACAACAAGTTCCTGCGCAAAAACTACTCTGAAGACGTCGTTCGCGAGATCCAAGAGGCCCAGGACGGCATCTCGCTCGTCGAGTCCGAATGGTCGCAACTCGAAGAGGATCGACGTCTCCTGCGAAAGATCTTCCCTCGCGGTGACGCCAAAATCGTGCTCCCCTGTAACCTGCAACGTCTCATCTGGAACGCTCAGAAGATCTTCAAAGTGGACCTTCGGAAGCCAGTGAACCTCTCGCCCCTCCACGTCATCAACGGCGTTCGGGAGCTGTCGAAGAAGCTGATCATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTAAAATGAGCCAAGAATCAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCAGACGATTTTCAGAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTTAAAATGAGCCAAGAATCACACAATTTGGGCTAAAAATGACCAGAATTTGGCTCTATTTCAATATGAAAAGCTCGAGAAATGACCTAAAAATAACTGAAATTGGCTAAAAAGTCTGAAAATTCCAGATTTCAGCCTGATTTTTTACTCTGAAACCTACAAATTTAGGCTGGAAATTATGCCAAAATCACTTTTTCTGACCTCAAAACCTTGAAAAACGACCCGAAAATGTCTGAAAATCGTCTGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CTTAAAATGAGCCAAGAATCACACAATTTGGGCTAAAAATGACCAGAATTTGGCTCTATTTCAATATGAAAAGCTCGAGAAATGACCTAAAMATAACTGAAATTGGCTAAAAAGTCTGAAAATTCCAGATTTCAGCCTGATTTTTTACTCTGAAACCTACAAATTTAGGCTGGAAATTATGCCAAAATCACTTTTTCTGACCTCAAAACCTTGAAAAACGACCCGAAAATGTCTGAAAATCGTCTGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34574</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>85110</contig_pos>
        <strand>+</strand>
        <context>ACCTAAAMAT[A/G]ACTGAAATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAATTTGGCTCTATTTCAATATGAAAAGCTCGAGAAATGACCTAAAAAT</left_flank>
        <right_flank>ACTGAAATTGGCTAAAAAGTCTGAAAATTCCAGATTTCAGCCTGATTTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATATTTCGACTCCCCAGAGCTTGAAAATCGCTCAGAAACTTAGTTCTGTCTATCTTAGCTTGAGAATCCTCAAAAAATGACTTTAAAATGATCAATTTTGGCCCAAAATAGCTCAAAATCGGACTTTTGTGGTCTGAAATCGCCGTTGAAACGTCTAGAATCCGTCTGAAATCTATCTGAAATTGGCAAAACTGGCTGAAAAAATCGGAAAATCCGGCTTTTGAGCACTTTTTTTTATCATTTTTAGCCCCAGAATTGCTCATTTTCTGCCTGAAAAACATCCAAAATGACGTTTTTCTGAATTGAACAGCTCGAAAAATGACACCAAAAATGTCTGGAAATCGTCTGAAATTGACTGAAAAGGTTGAAAATCCCAGACGTCAGCCTCCCACTCGATTTTAGGCTTAAAATGAGCCAAGAATCACACAATTTGGGCTAAAAATGACCAGAATTTGGCTCTATTTCAATATGAAAAGCTCGAGAAATGACCTAAAAATAACTGAAATTGGCTAAAAAGTCTGAAAATTCCAGATTTCAGCCTGATTTTTTACTCTGAAACCTACAAATTTAGGCTGGAAATTATGCCAAAATCACTTTTTCTGACCTCAAAACCTTGAAAAACGACCCGAAAATGTCTGAAAATCGTCTGAAAAATCCCGAATTCTGGCTTAAAATCGCTCAAATCTTCCAGATGGACCTAACCGACAACAAGTTCCTGCGCAAAAACTACTCTGAAGACGTCGTTCGCGAGATCCAAGAGGCCCAGGACGGCATCTCGCTCGTCGAGTCCGAATGGTCGCAACTCGAAGAGGATCGACGTCTCCTGCGAAAGATCTTCCCTCGCGGTGACGCCAAAATCGTGCTCCCCTGTAACCTGCAACGTCTCATCTGGAACGCTCAGAAGATCTTCAAAGTGGACCTTCGGAAGCCAGTGAACCTCTCGCCCCTCCACGTCATCAACGGCGTTCGGGAGCTGTCGAAGAAGCTGATCATCGTGA</canonical>
            <polymorphic>GGATATTTCGACTCCCCAGAGCTTGAAAATCGCTCAGAAACTTAGTTCTGTCTATCTTAGCTTGAGAATCCTCAAAAAATGACTTTAAAATGATCAATTTTGGCCCAAAATAGCTCAAAATCGGACTTTTGTGGTCTGAAATCGCCGTTGAAACGTCTAGAATCCGTCTGAAATCTATCTGAAATTGGCAAAACTGGCTGAAAAAATCGGAAAATCCGGCTTTTGAGCACTTTTTTTTATCATTTTTAGCCCCAGAATTGCTCATTTTCTGCCTGAAAAACATCCAAAATGACGTTTTTCTGAATTGAACAGCTCGAAAAATGACACCAAAAATGTCTGGAAATCGTCTGAAATTGACTGAAAAGGTTGAAAATCCCAGACGTCAGCCTCCCACTCGATTTTAGGCTTAAAATGAGCCAAGAATCACACAATTTGGGCTAAAAATGACCAGAATTTGGCTCTATTTCAATATGAAAAGCTCGAGAAATGACCTAAAAATRACTGAAATTGGCTAAAAAGTCTGAAAATTCCAGATTTCAGCCTGATTTTTTACTCTGAAACCTACAAATTTAGGCTGGAAATTATGCCAAAATCACTTTTTCTGACCTCAAAACCTTGAAAAACGACCCGAAAATGTCTGAAAATCGTCTGAAAAATCCCGAATTCTGGCTTAAAATCGCTCAAATCTTCCAGATGGACCTAACCGACAACAAGTTCCTGCGCAAAAACTACTCTGAAGACGTCGTTCGCGAGATCCAAGAGGCCCAGGACGGCATCTCGCTCGTCGAGTCCGAATGGTCGCAACTCGAAGAGGATCGACGTCTCCTGCGAAAGATCTTCCCTCGCGGTGACGCCAAAATCGTGCTCCCCTGTAACCTGCAACGTCTCATCTGGAACGCTCAGAAGATCTTCAAAGTGGACCTTCGGAAGCCAGTGAACCTCTCGCCCCTCCACGTCATCAACGGCGTTCGGGAGCTGTCGAAGAAGCTGATCATCGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTAAAATGAGCCAAGAATCAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCAGACGATTTTCAGAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTTAAAATGAGCCAAGAATCACACAATTTGGGCTAAAAATGACCAGAATTTGGCTCTATTTCAATATGAAAAGCTCGAGAAATGACCTAAAAATAACTGAAATTGGCTAAAAAGTCTGAAAATTCCAGATTTCAGCCTGATTTTTTACTCTGAAACCTACAAATTTAGGCTGGAAATTATGCCAAAATCACTTTTTCTGACCTCAAAACCTTGAAAAACGACCCGAAAATGTCTGAAAATCGTCTGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CTTAAAATGAGCCAAGAATCACACAATTTGGGCTAAAAATGACCAGAATTTGGCTCTATTTCAATATGAAAAGCTCGAGAAATGACCTAAAAATRACTGAAATTGGCTAAAAAGTCTGAAAATTCCAGATTTCAGCCTGATTTTTTACTCTGAAACCTACAAATTTAGGCTGGAAATTATGCCAAAATCACTTTTTCTGACCTCAAAACCTTGAAAAACGACCCGAAAATGTCTGAAAATCGTCTGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34575</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>85208</contig_pos>
        <strand>+</strand>
        <context>CAAAATCACT[A/T]TTTCTGACCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTACTCTGAAACCTACAAATTTAGGCTGGAAATTATGCCAAAATCACT</left_flank>
        <right_flank>TTTCTGACCTCAAAACCTTGAAAAACGACCCGAAAATGTCTGAAAATCGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGCCCAAAATAGCTCAAAATCGGACTTTTGTGGTCTGAAATCGCCGTTGAAACGTCTAGAATCCGTCTGAAATCTATCTGAAATTGGCAAAACTGGCTGAAAAAATCGGAAAATCCGGCTTTTGAGCACTTTTTTTTATCATTTTTAGCCCCAGAATTGCTCATTTTCTGCCTGAAAAACATCCAAAATGACGTTTTTCTGAATTGAACAGCTCGAAAAATGACACCAAAAATGTCTGGAAATCGTCTGAAATTGACTGAAAAGGTTGAAAATCCCAGACGTCAGCCTCCCACTCGATTTTAGGCTTAAAATGAGCCAAGAATCACACAATTTGGGCTAAAAATGACCAGAATTTGGCTCTATTTCAATATGAAAAGCTCGAGAAATGACCTAAAAATAACTGAAATTGGCTAAAAAGTCTGAAAATTCCAGATTTCAGCCTGATTTTTTACTCTGAAACCTACAAATTTAGGCTGGAAATTATGCCAAAATCACTTTTTCTGACCTCAAAACCTTGAAAAACGACCCGAAAATGTCTGAAAATCGTCTGAAAAATCCCGAATTCTGGCTTAAAATCGCTCAAATCTTCCAGATGGACCTAACCGACAACAAGTTCCTGCGCAAAAACTACTCTGAAGACGTCGTTCGCGAGATCCAAGAGGCCCAGGACGGCATCTCGCTCGTCGAGTCCGAATGGTCGCAACTCGAAGAGGATCGACGTCTCCTGCGAAAGATCTTCCCTCGCGGTGACGCCAAAATCGTGCTCCCCTGTAACCTGCAACGTCTCATCTGGAACGCTCAGAAGATCTTCAAAGTGGACCTTCGGAAGCCAGTGAACCTCTCGCCCCTCCACGTCATCAACGGCGTTCGGGAGCTGTCGAAGAAGCTGATCATCGTGAGTGGCAACGATGAGATCTCGAAGCAGGCGCAGTACAACGCCACATTGCTCATGAATATCCTCCTACGATCCACGCTCTGCACGAAGAAGATGTGCACC</canonical>
            <polymorphic>TTTGGCCCAAAATAGCTCAAAATCGGACTTTTGTGGTCTGAAATCGCCGTTGAAACGTCTAGAATCCGTCTGAAATCTATCTGAAATTGGCAAAACTGGCTGAAAAAATCGGAAAATCCGGCTTTTGAGCACTTTTTTTTATCATTTTTAGCCCCAGAATTGCTCATTTTCTGCCTGAAAAACATCCAAAATGACGTTTTTCTGAATTGAACAGCTCGAAAAATGACACCAAAAATGTCTGGAAATCGTCTGAAATTGACTGAAAAGGTTGAAAATCCCAGACGTCAGCCTCCCACTCGATTTTAGGCTTAAAATGAGCCAAGAATCACACAATTTGGGCTAAAAATGACCAGAATTTGGCTCTATTTCAATATGAAAAGCTCGAGAAATGACCTAAAAATAACTGAAATTGGCTAAAAAGTCTGAAAATTCCAGATTTCAGCCTGATTTTTTACTCTGAAACCTACAAATTTAGGCTGGAAATTATGCCAAAATCACTWTTTCTGACCTCAAAACCTTGAAAAACGACCCGAAAATGTCTGAAAATCGTCTGAAAAATCCCGAATTCTGGCTTAAAATCGCTCAAATCTTCCAGATGGACCTAACCGACAACAAGTTCCTGCGCAAAAACTACTCTGAAGACGTCGTTCGCGAGATCCAAGAGGCCCAGGACGGCATCTCGCTCGTCGAGTCCGAATGGTCGCAACTCGAAGAGGATCGACGTCTCCTGCGAAAGATCTTCCCTCGCGGTGACGCCAAAATCGTGCTCCCCTGTAACCTGCAACGTCTCATCTGGAACGCTCAGAAGATCTTCAAAGTGGACCTTCGGAAGCCAGTGAACCTCTCGCCCCTCCACGTCATCAACGGCGTTCGGGAGCTGTCGAAGAAGCTGATCATCGTGAGTGGCAACGATGAGATCTCGAAGCAGGCGCAGTACAACGCCACATTGCTCATGAATATCCTCCTACGATCCACGCTCTGCACGAAGAAGATGTGCACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGGCTAAAAAGTCTGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CGACGTCTTCAGAGTAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AATTGGCTAAAAAGTCTGAAAATTCCAGATTTCAGCCTGATTTTTTACTCTGAAACCTACAAATTTAGGCTGGAAATTATGCCAAAATCACTTTTTCTGACCTCAAAACCTTGAAAAACGACCCGAAAATGTCTGAAAATCGTCTGAAAAATCCCGAATTCTGGCTTAAAATCGCTCAAATCTTCCAGATGGACCTAACCGACAACAAGTTCCTGCGCAAAAACTACTCTGAAGACGTCG</canonical_amplicon>
		<polymorphic_amplicon>AATTGGCTAAAAAGTCTGAAAATTCCAGATTTCAGCCTGATTTTTTACTCTGAAACCTACAAATTTAGGCTGGAAATTATGCCAAAATCACTWTTTCTGACCTCAAAACCTTGAAAAACGACCCGAAAATGTCTGAAAATCGTCTGAAAAATCCCGAATTCTGGCTTAAAATCGCTCAAATCTTCCAGATGGACCTAACCGACAACAAGTTCCTGCGCAAAAACTACTCTGAAGACGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34576</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>85269</contig_pos>
        <strand>+</strand>
        <context>CTGAAAAATC[C/G]CGAATTCTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAAAACCTTGAAAAACGACCCGAAAATGTCTGAAAATCGTCTGAAAAATC</left_flank>
        <right_flank>CGAATTCTGGCTTAAAATCGCTCAAATCTTCCAGATGGACCTAACCGACA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATCCGTCTGAAATCTATCTGAAATTGGCAAAACTGGCTGAAAAAATCGGAAAATCCGGCTTTTGAGCACTTTTTTTTATCATTTTTAGCCCCAGAATTGCTCATTTTCTGCCTGAAAAACATCCAAAATGACGTTTTTCTGAATTGAACAGCTCGAAAAATGACACCAAAAATGTCTGGAAATCGTCTGAAATTGACTGAAAAGGTTGAAAATCCCAGACGTCAGCCTCCCACTCGATTTTAGGCTTAAAATGAGCCAAGAATCACACAATTTGGGCTAAAAATGACCAGAATTTGGCTCTATTTCAATATGAAAAGCTCGAGAAATGACCTAAAAATAACTGAAATTGGCTAAAAAGTCTGAAAATTCCAGATTTCAGCCTGATTTTTTACTCTGAAACCTACAAATTTAGGCTGGAAATTATGCCAAAATCACTTTTTCTGACCTCAAAACCTTGAAAAACGACCCGAAAATGTCTGAAAATCGTCTGAAAAATCCCGAATTCTGGCTTAAAATCGCTCAAATCTTCCAGATGGACCTAACCGACAACAAGTTCCTGCGCAAAAACTACTCTGAAGACGTCGTTCGCGAGATCCAAGAGGCCCAGGACGGCATCTCGCTCGTCGAGTCCGAATGGTCGCAACTCGAAGAGGATCGACGTCTCCTGCGAAAGATCTTCCCTCGCGGTGACGCCAAAATCGTGCTCCCCTGTAACCTGCAACGTCTCATCTGGAACGCTCAGAAGATCTTCAAAGTGGACCTTCGGAAGCCAGTGAACCTCTCGCCCCTCCACGTCATCAACGGCGTTCGGGAGCTGTCGAAGAAGCTGATCATCGTGAGTGGCAACGATGAGATCTCGAAGCAGGCGCAGTACAACGCCACATTGCTCATGAATATCCTCCTACGATCCACGCTCTGCACGAAGAAGATGTGCACCAGTGCGAAGCTCAACACGGAGGCGTTCGATTGGCTGTTAGGAGAAATCGAGACTCGCTTCC</canonical>
            <polymorphic>GAATCCGTCTGAAATCTATCTGAAATTGGCAAAACTGGCTGAAAAAATCGGAAAATCCGGCTTTTGAGCACTTTTTTTTATCATTTTTAGCCCCAGAATTGCTCATTTTCTGCCTGAAAAACATCCAAAATGACGTTTTTCTGAATTGAACAGCTCGAAAAATGACACCAAAAATGTCTGGAAATCGTCTGAAATTGACTGAAAAGGTTGAAAATCCCAGACGTCAGCCTCCCACTCGATTTTAGGCTTAAAATGAGCCAAGAATCACACAATTTGGGCTAAAAATGACCAGAATTTGGCTCTATTTCAATATGAAAAGCTCGAGAAATGACCTAAAAATAACTGAAATTGGCTAAAAAGTCTGAAAATTCCAGATTTCAGCCTGATTTTTTACTCTGAAACCTACAAATTTAGGCTGGAAATTATGCCAAAATCACTTTTTCTGACCTCAAAACCTTGAAAAACGACCCGAAAATGTCTGAAAATCGTCTGAAAAATCSCGAATTCTGGCTTAAAATCGCTCAAATCTTCCAGATGGACCTAACCGACAACAAGTTCCTGCGCAAAAACTACTCTGAAGACGTCGTTCGCGAGATCCAAGAGGCCCAGGACGGCATCTCGCTCGTCGAGTCCGAATGGTCGCAACTCGAAGAGGATCGACGTCTCCTGCGAAAGATCTTCCCTCGCGGTGACGCCAAAATCGTGCTCCCCTGTAACCTGCAACGTCTCATCTGGAACGCTCAGAAGATCTTCAAAGTGGACCTTCGGAAGCCAGTGAACCTCTCGCCCCTCCACGTCATCAACGGCGTTCGGGAGCTGTCGAAGAAGCTGATCATCGTGAGTGGCAACGATGAGATCTCGAAGCAGGCGCAGTACAACGCCACATTGCTCATGAATATCCTCCTACGATCCACGCTCTGCACGAAGAAGATGTGCACCAGTGCGAAGCTCAACACGGAGGCGTTCGATTGGCTGTTAGGAGAAATCGAGACTCGCTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>494 295 211</canonical_bands>
                <polymorphic_bands>705 295</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGGCTAAAAAGTCTGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CGACGTCTTCAGAGTAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AATTGGCTAAAAAGTCTGAAAATTCCAGATTTCAGCCTGATTTTTTACTCTGAAACCTACAAATTTAGGCTGGAAATTATGCCAAAATCACTTTTTCTGACCTCAAAACCTTGAAAAACGACCCGAAAATGTCTGAAAATCGTCTGAAAAATCCCGAATTCTGGCTTAAAATCGCTCAAATCTTCCAGATGGACCTAACCGACAACAAGTTCCTGCGCAAAAACTACTCTGAAGACGTCG</canonical_amplicon>
		<polymorphic_amplicon>AATTGGCTAAAAAGTCTGAAAATTCCAGATTTCAGCCTGATTTTTTACTCTGAAACCTACAAATTTAGGCTGGAAATTATGCCAAAATCACTTTTTCTGACCTCAAAACCTTGAAAAACGACCCGAAAATGTCTGAAAATCGTCTGAAAAATCSCGAATTCTGGCTTAAAATCGCTCAAATCTTCCAGATGGACCTAACCGACAACAAGTTCCTGCGCAAAAACTACTCTGAAGACGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34577</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>85293</contig_pos>
        <strand>+</strand>
        <context>AAAATCGCTC[A/T]AATCTTCCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATGTCTGAAAATCGTCTGAAAAATCCCGAATTCTGGCTTAAAATCGCTC</left_flank>
        <right_flank>AATCTTCCAGATGGACCTAACCGACAACAAGTTCCTGCGCAAAAACTACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGGCAAAACTGGCTGAAAAAATCGGAAAATCCGGCTTTTGAGCACTTTTTTTTATCATTTTTAGCCCCAGAATTGCTCATTTTCTGCCTGAAAAACATCCAAAATGACGTTTTTCTGAATTGAACAGCTCGAAAAATGACACCAAAAATGTCTGGAAATCGTCTGAAATTGACTGAAAAGGTTGAAAATCCCAGACGTCAGCCTCCCACTCGATTTTAGGCTTAAAATGAGCCAAGAATCACACAATTTGGGCTAAAAATGACCAGAATTTGGCTCTATTTCAATATGAAAAGCTCGAGAAATGACCTAAAAATAACTGAAATTGGCTAAAAAGTCTGAAAATTCCAGATTTCAGCCTGATTTTTTACTCTGAAACCTACAAATTTAGGCTGGAAATTATGCCAAAATCACTTTTTCTGACCTCAAAACCTTGAAAAACGACCCGAAAATGTCTGAAAATCGTCTGAAAAATCCCGAATTCTGGCTTAAAATCGCTCAAATCTTCCAGATGGACCTAACCGACAACAAGTTCCTGCGCAAAAACTACTCTGAAGACGTCGTTCGCGAGATCCAAGAGGCCCAGGACGGCATCTCGCTCGTCGAGTCCGAATGGTCGCAACTCGAAGAGGATCGACGTCTCCTGCGAAAGATCTTCCCTCGCGGTGACGCCAAAATCGTGCTCCCCTGTAACCTGCAACGTCTCATCTGGAACGCTCAGAAGATCTTCAAAGTGGACCTTCGGAAGCCAGTGAACCTCTCGCCCCTCCACGTCATCAACGGCGTTCGGGAGCTGTCGAAGAAGCTGATCATCGTGAGTGGCAACGATGAGATCTCGAAGCAGGCGCAGTACAACGCCACATTGCTCATGAATATCCTCCTACGATCCACGCTCTGCACGAAGAAGATGTGCACCAGTGCGAAGCTCAACACGGAGGCGTTCGATTGGCTGTTAGGAGAAATCGAGACTCGCTTCCAACAGGCTATTGCCCAGCCCGGAG</canonical>
            <polymorphic>ATTGGCAAAACTGGCTGAAAAAATCGGAAAATCCGGCTTTTGAGCACTTTTTTTTATCATTTTTAGCCCCAGAATTGCTCATTTTCTGCCTGAAAAACATCCAAAATGACGTTTTTCTGAATTGAACAGCTCGAAAAATGACACCAAAAATGTCTGGAAATCGTCTGAAATTGACTGAAAAGGTTGAAAATCCCAGACGTCAGCCTCCCACTCGATTTTAGGCTTAAAATGAGCCAAGAATCACACAATTTGGGCTAAAAATGACCAGAATTTGGCTCTATTTCAATATGAAAAGCTCGAGAAATGACCTAAAAATAACTGAAATTGGCTAAAAAGTCTGAAAATTCCAGATTTCAGCCTGATTTTTTACTCTGAAACCTACAAATTTAGGCTGGAAATTATGCCAAAATCACTTTTTCTGACCTCAAAACCTTGAAAAACGACCCGAAAATGTCTGAAAATCGTCTGAAAAATCCCGAATTCTGGCTTAAAATCGCTCWAATCTTCCAGATGGACCTAACCGACAACAAGTTCCTGCGCAAAAACTACTCTGAAGACGTCGTTCGCGAGATCCAAGAGGCCCAGGACGGCATCTCGCTCGTCGAGTCCGAATGGTCGCAACTCGAAGAGGATCGACGTCTCCTGCGAAAGATCTTCCCTCGCGGTGACGCCAAAATCGTGCTCCCCTGTAACCTGCAACGTCTCATCTGGAACGCTCAGAAGATCTTCAAAGTGGACCTTCGGAAGCCAGTGAACCTCTCGCCCCTCCACGTCATCAACGGCGTTCGGGAGCTGTCGAAGAAGCTGATCATCGTGAGTGGCAACGATGAGATCTCGAAGCAGGCGCAGTACAACGCCACATTGCTCATGAATATCCTCCTACGATCCACGCTCTGCACGAAGAAGATGTGCACCAGTGCGAAGCTCAACACGGAGGCGTTCGATTGGCTGTTAGGAGAAATCGAGACTCGCTTCCAACAGGCTATTGCCCAGCCCGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGGCTAAAAAGTCTGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CGACGTCTTCAGAGTAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AATTGGCTAAAAAGTCTGAAAATTCCAGATTTCAGCCTGATTTTTTACTCTGAAACCTACAAATTTAGGCTGGAAATTATGCCAAAATCACTTTTTCTGACCTCAAAACCTTGAAAAACGACCCGAAAATGTCTGAAAATCGTCTGAAAAATCCCGAATTCTGGCTTAAAATCGCTCAAATCTTCCAGATGGACCTAACCGACAACAAGTTCCTGCGCAAAAACTACTCTGAAGACGTCG</canonical_amplicon>
		<polymorphic_amplicon>AATTGGCTAAAAAGTCTGAAAATTCCAGATTTCAGCCTGATTTTTTACTCTGAAACCTACAAATTTAGGCTGGAAATTATGCCAAAATCACTTTTTCTGACCTCAAAACCTTGAAAAACGACCCGAAAATGTCTGAAAATCGTCTGAAAAATCCCGAATTCTGGCTTAAAATCGCTCWAATCTTCCAGATGGACCTAACCGACAACAAGTTCCTGCGCAAAAACTACTCTGAAGACGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34578</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>85373</contig_pos>
        <strand>+</strand>
        <context>GATCCAAGAG[G/T]CCCAGGACGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGTTCCTGCGCAAAAACTACTCTGAAGACGTCGTTCGCGAGATCCAAGAG</left_flank>
        <right_flank>CCCAGGACGGCATCTCGCTCGTCGAGTCCGAATGGTCGCAACTCGAAGAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTCTGCCTGAAAAACATCCAAAATGACGTTTTTCTGAATTGAACAGCTCGAAAAATGACACCAAAAATGTCTGGAAATCGTCTGAAATTGACTGAAAAGGTTGAAAATCCCAGACGTCAGCCTCCCACTCGATTTTAGGCTTAAAATGAGCCAAGAATCACACAATTTGGGCTAAAAATGACCAGAATTTGGCTCTATTTCAATATGAAAAGCTCGAGAAATGACCTAAAAATAACTGAAATTGGCTAAAAAGTCTGAAAATTCCAGATTTCAGCCTGATTTTTTACTCTGAAACCTACAAATTTAGGCTGGAAATTATGCCAAAATCACTTTTTCTGACCTCAAAACCTTGAAAAACGACCCGAAAATGTCTGAAAATCGTCTGAAAAATCCCGAATTCTGGCTTAAAATCGCTCAAATCTTCCAGATGGACCTAACCGACAACAAGTTCCTGCGCAAAAACTACTCTGAAGACGTCGTTCGCGAGATCCAAGAGGCCCAGGACGGCATCTCGCTCGTCGAGTCCGAATGGTCGCAACTCGAAGAGGATCGACGTCTCCTGCGAAAGATCTTCCCTCGCGGTGACGCCAAAATCGTGCTCCCCTGTAACCTGCAACGTCTCATCTGGAACGCTCAGAAGATCTTCAAAGTGGACCTTCGGAAGCCAGTGAACCTCTCGCCCCTCCACGTCATCAACGGCGTTCGGGAGCTGTCGAAGAAGCTGATCATCGTGAGTGGCAACGATGAGATCTCGAAGCAGGCGCAGTACAACGCCACATTGCTCATGAATATCCTCCTACGATCCACGCTCTGCACGAAGAAGATGTGCACCAGTGCGAAGCTCAACACGGAGGCGTTCGATTGGCTGTTAGGAGAAATCGAGACTCGCTTCCAACAGGCTATTGCCCAGCCCGGAGAGATGGTCGGAGCACTGGCAGCGCAGTCTCTGGGAGAACCGGCCACTCAGATGACGTTGAACACCTTCCATTATGCTGGA</canonical>
            <polymorphic>ATTTTCTGCCTGAAAAACATCCAAAATGACGTTTTTCTGAATTGAACAGCTCGAAAAATGACACCAAAAATGTCTGGAAATCGTCTGAAATTGACTGAAAAGGTTGAAAATCCCAGACGTCAGCCTCCCACTCGATTTTAGGCTTAAAATGAGCCAAGAATCACACAATTTGGGCTAAAAATGACCAGAATTTGGCTCTATTTCAATATGAAAAGCTCGAGAAATGACCTAAAAATAACTGAAATTGGCTAAAAAGTCTGAAAATTCCAGATTTCAGCCTGATTTTTTACTCTGAAACCTACAAATTTAGGCTGGAAATTATGCCAAAATCACTTTTTCTGACCTCAAAACCTTGAAAAACGACCCGAAAATGTCTGAAAATCGTCTGAAAAATCCCGAATTCTGGCTTAAAATCGCTCAAATCTTCCAGATGGACCTAACCGACAACAAGTTCCTGCGCAAAAACTACTCTGAAGACGTCGTTCGCGAGATCCAAGAGKCCCAGGACGGCATCTCGCTCGTCGAGTCCGAATGGTCGCAACTCGAAGAGGATCGACGTCTCCTGCGAAAGATCTTCCCTCGCGGTGACGCCAAAATCGTGCTCCCCTGTAACCTGCAACGTCTCATCTGGAACGCTCAGAAGATCTTCAAAGTGGACCTTCGGAAGCCAGTGAACCTCTCGCCCCTCCACGTCATCAACGGCGTTCGGGAGCTGTCGAAGAAGCTGATCATCGTGAGTGGCAACGATGAGATCTCGAAGCAGGCGCAGTACAACGCCACATTGCTCATGAATATCCTCCTACGATCCACGCTCTGCACGAAGAAGATGTGCACCAGTGCGAAGCTCAACACGGAGGCGTTCGATTGGCTGTTAGGAGAAATCGAGACTCGCTTCCAACAGGCTATTGCCCAGCCCGGAGAGATGGTCGGAGCACTGGCAGCGCAGTCTCTGGGAGAACCGGCCACTCAGATGACGTTGAACACCTTCCATTATGCTGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>433 345 156 66</canonical_bands>
                <polymorphic_bands>433 345 222</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 462 38</canonical_bands>
                <polymorphic_bands>962 38</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>167 120 95 94 74 49 49 45 38 34 34 33 29 24 21 21 20 19 12 11 11</canonical_bands>
                <polymorphic_bands>261 120 95 74 49 49 45 38 34 34 33 29 24 21 21 20 19 12 11 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTGAAAATCGTCTGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GATGAGACGTTGCAGGTTAC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>GTCTGAAAATCGTCTGAAAAATCCCGAATTCTGGCTTAAAATCGCTCAAATCTTCCAGATGGACCTAACCGACAACAAGTTCCTGCGCAAAAACTACTCTGAAGACGTCGTTCGCGAGATCCAAGAGGCCCAGGACGGCATCTCGCTCGTCGAGTCCGAATGGTCGCAACTCGAAGAGGATCGACGTCTCCTGCGAAAGATCTTCCCTCGCGGTGACGCCAAAATCGTGCTCCCCTGTAACCTGCAACGTCTCATC</canonical_amplicon>
		<polymorphic_amplicon>GTCTGAAAATCGTCTGAAAAATCCCGAATTCTGGCTTAAAATCGCTCAAATCTTCCAGATGGACCTAACCGACAACAAGTTCCTGCGCAAAAACTACTCTGAAGACGTCGTTCGCGAGATCCAAGAGKCCCAGGACGGCATCTCGCTCGTCGAGTCCGAATGGTCGCAACTCGAAGAGGATCGACGTCTCCTGCGAAAGATCTTCCCTCGCGGTGACGCCAAAATCGTGCTCCCCTGTAACCTGCAACGTCTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34579</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>86758</contig_pos>
        <strand>+</strand>
        <context>TGATGACGGC[C/G]AAGGGACACT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCCTATGTGAACTATCGGCACTTGGCGCTTCTTTGTGATGTGATGACGGC</left_flank>
        <right_flank>AAGGGACACTTGATGGCTATCACACGTCATGGTATCAACAGACAGGAAGT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACAGGATGTGCACACGATTTATACAGATGACAACGCTGAGAAACTAGTTTTCCGGCTTCGAATCGCTGGAGAGGACAAGGGAGCCGAGGGACAGGAGGAGCAGGTTGATAAGATGGAGGATGACGTCTTCTTGAGATGCATTGAAGCCAACATGCTCTCAGATCTCACTCTCCAGGGTATTCCAGCAATCTCAAAGGTCTACATGAATCAGCCTAACACTGATGATAAGAAACGAATCATCATCACGCCGGAGGGAGGATTCAAGGCGGTGGCCGATTGGATTCTGGAGACTGATGGAACTGCGCTGCTCAGAGTTCTTTCCGAGAGACAGATCGATCCGGTTCGAACGACGTCTAACGATATCTGCGAGATCTTTGAGGTGCTGGGAATTGAAGCTGTGCGAAAGTCGATTGAGAAGGAAATGGACAACGTCATCTCGTTCGACGGATCCTATGTGAACTATCGGCACTTGGCGCTTCTTTGTGATGTGATGACGGCGAAGGGACACTTGATGGCTATCACACGTCATGGTATCAACAGACAGGAAGTTGGAGCGCTGATGAGATGTTCGTTCGAGGAGACTGTCGATATTTTGATGGAGGCGTCCGTGCATGCCGAGGTGGATCCGGTTAAAGGTACTTTTGAGTCGGAAATTTGGTTTTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTTATGTCACTCTGCGTACAGCTGCCATCCTCGCCTTTATGTATGCATCCGAGGTGCCGCTCTCTCATTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCCCAATCCTCGTCCTCACAAGTTCAACTCCTCGAGGGACATATTTAGACGGAATATCGAGAACATTATTTTTTTTCATGTCCCCCCACCTTTAAAATAGCTAAAAATTGCTTTAAAGTCGATTTGGCCCAAATATGGCAGATTTCAAGTGCGAAAAG</canonical>
            <polymorphic>GACAGGATGTGCACACGATTTATACAGATGACAACGCTGAGAAACTAGTTTTCCGGCTTCGAATCGCTGGAGAGGACAAGGGAGCCGAGGGACAGGAGGAGCAGGTTGATAAGATGGAGGATGACGTCTTCTTGAGATGCATTGAAGCCAACATGCTCTCAGATCTCACTCTCCAGGGTATTCCAGCAATCTCAAAGGTCTACATGAATCAGCCTAACACTGATGATAAGAAACGAATCATCATCACGCCGGAGGGAGGATTCAAGGCGGTGGCCGATTGGATTCTGGAGACTGATGGAACTGCGCTGCTCAGAGTTCTTTCCGAGAGACAGATCGATCCGGTTCGAACGACGTCTAACGATATCTGCGAGATCTTTGAGGTGCTGGGAATTGAAGCTGTGCGAAAGTCGATTGAGAAGGAAATGGACAACGTCATCTCGTTCGACGGATCCTATGTGAACTATCGGCACTTGGCGCTTCTTTGTGATGTGATGACGGCSAAGGGACACTTGATGGCTATCACACGTCATGGTATCAACAGACAGGAAGTTGGAGCGCTGATGAGATGTTCGTTCGAGGAGACTGTCGATATTTTGATGGAGGCGTCCGTGCATGCCGAGGTGGATCCGGTTAAAGGTACTTTTGAGTCGGAAATTTGGTTTTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTTATGTCACTCTGCGTACAGCTGCCATCCTCGCCTTTATGTATGCATCCGAGGTGCCGCTCTCTCATTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCCCAATCCTCGTCCTCACAAGTTCAACTCCTCGAGGGACATATTTAGACGGAATATCGAGAACATTATTTTTTTTCATGTCCCCCCACCTTTAAAATAGCTAAAAATTGCTTTAAAGTCGATTTGGCCCAAATATGGCAGATTTCAAGTGCGAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGAGAAGGAAATGGACAAC</pcr_primer_p1>
		<pcr_primer_p2>TTAAAACCAAATTTCCGACTC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>ATTGAGAAGGAAATGGACAACGTCATCTCGTTCGACGGATCCTATGTGAACTATCGGCACTTGGCGCTTCTTTGTGATGTGATGACGGCGAAGGGACACTTGATGGCTATCACACGTCATGGTATCAACAGACAGGAAGTTGGAGCGCTGATGAGATGTTCGTTCGAGGAGACTGTCGATATTTTGATGGAGGCGTCCGTGCATGCCGAGGTGGATCCGGTTAAAGGTACTTTTGAGTCGGAAATTTGGTTTTAA</canonical_amplicon>
		<polymorphic_amplicon>ATTGAGAAGGAAATGGACAACGTCATCTCGTTCGACGGATCCTATGTGAACTATCGGCACTTGGCGCTTCTTTGTGATGTGATGACGGCSAAGGGACACTTGATGGCTATCACACGTCATGGTATCAACAGACAGGAAGTTGGAGCGCTGATGAGATGTTCGTTCGAGGAGACTGTCGATATTTTGATGGAGGCGTCCGTGCATGCCGAGGTGGATCCGGTTAAAGGTACTTTTGAGTCGGAAATTTGGTTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34580</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>86806</contig_pos>
        <strand>+</strand>
        <context>ACAGACAGGA[A/G]GTTGGAGCGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCGAAGGGACACTTGATGGCTATCACACGTCATGGTATCAACAGACAGGA</left_flank>
        <right_flank>GTTGGAGCGCTGATGAGATGTTCGTTCGAGGAGACTGTCGATATTTTGAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCCGGCTTCGAATCGCTGGAGAGGACAAGGGAGCCGAGGGACAGGAGGAGCAGGTTGATAAGATGGAGGATGACGTCTTCTTGAGATGCATTGAAGCCAACATGCTCTCAGATCTCACTCTCCAGGGTATTCCAGCAATCTCAAAGGTCTACATGAATCAGCCTAACACTGATGATAAGAAACGAATCATCATCACGCCGGAGGGAGGATTCAAGGCGGTGGCCGATTGGATTCTGGAGACTGATGGAACTGCGCTGCTCAGAGTTCTTTCCGAGAGACAGATCGATCCGGTTCGAACGACGTCTAACGATATCTGCGAGATCTTTGAGGTGCTGGGAATTGAAGCTGTGCGAAAGTCGATTGAGAAGGAAATGGACAACGTCATCTCGTTCGACGGATCCTATGTGAACTATCGGCACTTGGCGCTTCTTTGTGATGTGATGACGGCGAAGGGACACTTGATGGCTATCACACGTCATGGTATCAACAGACAGGAAGTTGGAGCGCTGATGAGATGTTCGTTCGAGGAGACTGTCGATATTTTGATGGAGGCGTCCGTGCATGCCGAGGTGGATCCGGTTAAAGGTACTTTTGAGTCGGAAATTTGGTTTTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTTATGTCACTCTGCGTACAGCTGCCATCCTCGCCTTTATGTATGCATCCGAGGTGCCGCTCTCTCATTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCCCAATCCTCGTCCTCACAAGTTCAACTCCTCGAGGGACATATTTAGACGGAATATCGAGAACATTATTTTTTTTCATGTCCCCCCACCTTTAAAATAGCTAAAAATTGCTTTAAAGTCGATTTGGCCCAAATATGGCAGATTTCAAGTGCGAAAAGCTGAAAATCGCTCTCAAAATAGCTTCAAACGCCCTGAAAGTTTTTCAC</canonical>
            <polymorphic>TTTTCCGGCTTCGAATCGCTGGAGAGGACAAGGGAGCCGAGGGACAGGAGGAGCAGGTTGATAAGATGGAGGATGACGTCTTCTTGAGATGCATTGAAGCCAACATGCTCTCAGATCTCACTCTCCAGGGTATTCCAGCAATCTCAAAGGTCTACATGAATCAGCCTAACACTGATGATAAGAAACGAATCATCATCACGCCGGAGGGAGGATTCAAGGCGGTGGCCGATTGGATTCTGGAGACTGATGGAACTGCGCTGCTCAGAGTTCTTTCCGAGAGACAGATCGATCCGGTTCGAACGACGTCTAACGATATCTGCGAGATCTTTGAGGTGCTGGGAATTGAAGCTGTGCGAAAGTCGATTGAGAAGGAAATGGACAACGTCATCTCGTTCGACGGATCCTATGTGAACTATCGGCACTTGGCGCTTCTTTGTGATGTGATGACGGCGAAGGGACACTTGATGGCTATCACACGTCATGGTATCAACAGACAGGARGTTGGAGCGCTGATGAGATGTTCGTTCGAGGAGACTGTCGATATTTTGATGGAGGCGTCCGTGCATGCCGAGGTGGATCCGGTTAAAGGTACTTTTGAGTCGGAAATTTGGTTTTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTTATGTCACTCTGCGTACAGCTGCCATCCTCGCCTTTATGTATGCATCCGAGGTGCCGCTCTCTCATTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCCCAATCCTCGTCCTCACAAGTTCAACTCCTCGAGGGACATATTTAGACGGAATATCGAGAACATTATTTTTTTTCATGTCCCCCCACCTTTAAAATAGCTAAAAATTGCTTTAAAGTCGATTTGGCCCAAATATGGCAGATTTCAAGTGCGAAAAGCTGAAAATCGCTCTCAAAATAGCTTCAAACGCCCTGAAAGTTTTTCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGAGAAGGAAATGGACAAC</pcr_primer_p1>
		<pcr_primer_p2>TTAAAACCAAATTTCCGACTC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>ATTGAGAAGGAAATGGACAACGTCATCTCGTTCGACGGATCCTATGTGAACTATCGGCACTTGGCGCTTCTTTGTGATGTGATGACGGCGAAGGGACACTTGATGGCTATCACACGTCATGGTATCAACAGACAGGAAGTTGGAGCGCTGATGAGATGTTCGTTCGAGGAGACTGTCGATATTTTGATGGAGGCGTCCGTGCATGCCGAGGTGGATCCGGTTAAAGGTACTTTTGAGTCGGAAATTTGGTTTTAA</canonical_amplicon>
		<polymorphic_amplicon>ATTGAGAAGGAAATGGACAACGTCATCTCGTTCGACGGATCCTATGTGAACTATCGGCACTTGGCGCTTCTTTGTGATGTGATGACGGCGAAGGGACACTTGATGGCTATCACACGTCATGGTATCAACAGACAGGARGTTGGAGCGCTGATGAGATGTTCGTTCGAGGAGACTGTCGATATTTTGATGGAGGCGTCCGTGCATGCCGAGGTGGATCCGGTTAAAGGTACTTTTGAGTCGGAAATTTGGTTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34581</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>87001</contig_pos>
        <strand>+</strand>
        <context>TACAACGCTT[A/T]ATGTCACTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGATTTTTGGGGCCAGAGTATGCATTCTACCGTGACGGTGTACAACGCTT</left_flank>
        <right_flank>ATGTCACTCTGCGTACAGCTGCCATCCTCGCCTTTATGTATGCATCCGAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACGCCGGAGGGAGGATTCAAGGCGGTGGCCGATTGGATTCTGGAGACTGATGGAACTGCGCTGCTCAGAGTTCTTTCCGAGAGACAGATCGATCCGGTTCGAACGACGTCTAACGATATCTGCGAGATCTTTGAGGTGCTGGGAATTGAAGCTGTGCGAAAGTCGATTGAGAAGGAAATGGACAACGTCATCTCGTTCGACGGATCCTATGTGAACTATCGGCACTTGGCGCTTCTTTGTGATGTGATGACGGCGAAGGGACACTTGATGGCTATCACACGTCATGGTATCAACAGACAGGAAGTTGGAGCGCTGATGAGATGTTCGTTCGAGGAGACTGTCGATATTTTGATGGAGGCGTCCGTGCATGCCGAGGTGGATCCGGTTAAAGGTACTTTTGAGTCGGAAATTTGGTTTTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTTATGTCACTCTGCGTACAGCTGCCATCCTCGCCTTTATGTATGCATCCGAGGTGCCGCTCTCTCATTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCCCAATCCTCGTCCTCACAAGTTCAACTCCTCGAGGGACATATTTAGACGGAATATCGAGAACATTATTTTTTTTCATGTCCCCCCACCTTTAAAATAGCTAAAAATTGCTTTAAAGTCGATTTGGCCCAAATATGGCAGATTTCAAGTGCGAAAAGCTGAAAATCGCTCTCAAAATAGCTTCAAACGCCCTGAAAGTTTTTCACTTACCGTATCCCGATTCGGCTAAAAATTGACCTATTTTTAGCTGAAAAATCGTTTGAAAATAGGCCAAAATCGACCCAGATTGGTCTGAAATACTCTAGACGAATTTGGCTAAAAATGGACTGATTTTCAGCCCGAAAATCTCAGAAAATCTGTTTTAAACGTTTTGAGCTCCGAATTATTCCCAAAAAAAATCA</canonical>
            <polymorphic>TCACGCCGGAGGGAGGATTCAAGGCGGTGGCCGATTGGATTCTGGAGACTGATGGAACTGCGCTGCTCAGAGTTCTTTCCGAGAGACAGATCGATCCGGTTCGAACGACGTCTAACGATATCTGCGAGATCTTTGAGGTGCTGGGAATTGAAGCTGTGCGAAAGTCGATTGAGAAGGAAATGGACAACGTCATCTCGTTCGACGGATCCTATGTGAACTATCGGCACTTGGCGCTTCTTTGTGATGTGATGACGGCGAAGGGACACTTGATGGCTATCACACGTCATGGTATCAACAGACAGGAAGTTGGAGCGCTGATGAGATGTTCGTTCGAGGAGACTGTCGATATTTTGATGGAGGCGTCCGTGCATGCCGAGGTGGATCCGGTTAAAGGTACTTTTGAGTCGGAAATTTGGTTTTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTWATGTCACTCTGCGTACAGCTGCCATCCTCGCCTTTATGTATGCATCCGAGGTGCCGCTCTCTCATTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCCCAATCCTCGTCCTCACAAGTTCAACTCCTCGAGGGACATATTTAGACGGAATATCGAGAACATTATTTTTTTTCATGTCCCCCCACCTTTAAAATAGCTAAAAATTGCTTTAAAGTCGATTTGGCCCAAATATGGCAGATTTCAAGTGCGAAAAGCTGAAAATCGCTCTCAAAATAGCTTCAAACGCCCTGAAAGTTTTTCACTTACCGTATCCCGATTCGGCTAAAAATTGACCTATTTTTAGCTGAAAAATCGTTTGAAAATAGGCCAAAATCGACCCAGATTGGTCTGAAATACTCTAGACGAATTTGGCTAAAAATGGACTGATTTTCAGCCCGAAAATCTCAGAAAATCTGTTTTAAACGTTTTGAGCTCCGAATTATTCCCAAAAAAAATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAGACTGTCGATATTTTGAT</pcr_primer_p1>
		<pcr_primer_p2>ACCTCGGATGCATACATAAA</pcr_primer_p2>
		<pcr_amplicon_size>219</pcr_amplicon_size>
		<canonical_amplicon>AGGAGACTGTCGATATTTTGATGGAGGCGTCCGTGCATGCCGAGGTGGATCCGGTTAAAGGTACTTTTGAGTCGGAAATTTGGTTTTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTTATGTCACTCTGCGTACAGCTGCCATCCTCGCCTTTATGTATGCATCCGAGGT</canonical_amplicon>
		<polymorphic_amplicon>AGGAGACTGTCGATATTTTGATGGAGGCGTCCGTGCATGCCGAGGTGGATCCGGTTAAAGGTACTTTTGAGTCGGAAATTTGGTTTTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTWATGTCACTCTGCGTACAGCTGCCATCCTCGCCTTTATGTATGCATCCGAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34582</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>87023</contig_pos>
        <strand></strand>
        <context>CGTACAGCTG[C/T]CATCCTCGCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATTCTACCGTGACGGTGTACAACGCTTTATGTCACTCTGCGTACAGCTG</left_flank>
        <right_flank>CATCCTCGCCTTTATGTATGCATCCGAGGTGCCGCTCTCTCATTGCCCGC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCGGTGGCCGATTGGATTCTGGAGACTGATGGAACTGCGCTGCTCAGAGTTCTTTCCGAGAGACAGATCGATCCGGTTCGAACGACGTCTAACGATATCTGCGAGATCTTTGAGGTGCTGGGAATTGAAGCTGTGCGAAAGTCGATTGAGAAGGAAATGGACAACGTCATCTCGTTCGACGGATCCTATGTGAACTATCGGCACTTGGCGCTTCTTTGTGATGTGATGACGGCGAAGGGACACTTGATGGCTATCACACGTCATGGTATCAACAGACAGGAAGTTGGAGCGCTGATGAGATGTTCGTTCGAGGAGACTGTCGATATTTTGATGGAGGCGTCCGTGCATGCCGAGGTGGATCCGGTTAAAGGTACTTTTGAGTCGGAAATTTGGTTTTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTTATGTCACTCTGCGTACAGCTGCCATCCTCGCCTTTATGTATGCATCCGAGGTGCCGCTCTCTCATTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCCCAATCCTCGTCCTCACAAGTTCAACTCCTCGAGGGACATATTTAGACGGAATATCGAGAACATTATTTTTTTTCATGTCCCCCCACCTTTAAAATAGCTAAAAATTGCTTTAAAGTCGATTTGGCCCAAATATGGCAGATTTCAAGTGCGAAAAGCTGAAAATCGCTCTCAAAATAGCTTCAAACGCCCTGAAAGTTTTTCACTTACCGTATCCCGATTCGGCTAAAAATTGACCTATTTTTAGCTGAAAAATCGTTTGAAAATAGGCCAAAATCGACCCAGATTGGTCTGAAATACTCTAGACGAATTTGGCTAAAAATGGACTGATTTTCAGCCCGAAAATCTCAGAAAATCTGTTTTAAACGTTTTGAGCTCCGAATTATTCCCAAAAAAAATCAAAATTACGGTCATTTTAGAGCC</canonical>
            <polymorphic>GGCGGTGGCCGATTGGATTCTGGAGACTGATGGAACTGCGCTGCTCAGAGTTCTTTCCGAGAGACAGATCGATCCGGTTCGAACGACGTCTAACGATATCTGCGAGATCTTTGAGGTGCTGGGAATTGAAGCTGTGCGAAAGTCGATTGAGAAGGAAATGGACAACGTCATCTCGTTCGACGGATCCTATGTGAACTATCGGCACTTGGCGCTTCTTTGTGATGTGATGACGGCGAAGGGACACTTGATGGCTATCACACGTCATGGTATCAACAGACAGGAAGTTGGAGCGCTGATGAGATGTTCGTTCGAGGAGACTGTCGATATTTTGATGGAGGCGTCCGTGCATGCCGAGGTGGATCCGGTTAAAGGTACTTTTGAGTCGGAAATTTGGTTTTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTTATGTCACTCTGCGTACAGCTGYCATCCTCGCCTTTATGTATGCATCCGAGGTGCCGCTCTCTCATTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCCCAATCCTCGTCCTCACAAGTTCAACTCCTCGAGGGACATATTTAGACGGAATATCGAGAACATTATTTTTTTTCATGTCCCCCCACCTTTAAAATAGCTAAAAATTGCTTTAAAGTCGATTTGGCCCAAATATGGCAGATTTCAAGTGCGAAAAGCTGAAAATCGCTCTCAAAATAGCTTCAAACGCCCTGAAAGTTTTTCACTTACCGTATCCCGATTCGGCTAAAAATTGACCTATTTTTAGCTGAAAAATCGTTTGAAAATAGGCCAAAATCGACCCAGATTGGTCTGAAATACTCTAGACGAATTTGGCTAAAAATGGACTGATTTTCAGCCCGAAAATCTCAGAAAATCTGTTTTAAACGTTTTGAGCTCCGAATTATTCCCAAAAAAAATCAAAATTACGGTCATTTTAGAGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>297 237 212 208 46</canonical_bands>
                <polymorphic_bands>343 237 212 208</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>456 426 43 35 35 5</canonical_bands>
                <polymorphic_bands>491 426 43 35 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>504 456 40</canonical_bands>
                <polymorphic_bands>960 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGTATGCATTCTACCGTGAC</pcr_primer_p1>
		<pcr_primer_p2>GCAATTTTTAGCTATTTTAAAGGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGAGTATGCATTCTACCGTGACGGTGTACAACGCTTTATGTCACTCTGCGTACAGCTGCCATCCTCGCCTTTATGTATGCATCCGAGGTGCCGCTCTCTCATTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCCCAATCCTCGTCCTCACAAGTTCAACTCCTCGAGGGACATATTTAGACGGAATATCGAGAACATTATTTTTTTTCATGTCCCCCCACCTTTAAAATAGCTAAAAATTGC</canonical_amplicon>
		<polymorphic_amplicon>AGAGTATGCATTCTACCGTGACGGTGTACAACGCTTTATGTCACTCTGCGTACAGCTGYCATCCTCGCCTTTATGTATGCATCCGAGGTGCCGCTCTCTCATTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCCCAATCCTCGTCCTCACAAGTTCAACTCCTCGAGGGACATATTTAGACGGAATATCGAGAACATTATTTTTTTTCATGTCCCCCCACCTTTAAAATAGCTAAAAATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34583</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>87246</contig_pos>
        <strand>+</strand>
        <context>TGGCAGATTT[C/T]AAGTGCGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATAGCTAAAAATTGCTTTAAAGTCGATTTGGCCCAAATATGGCAGATTT</left_flank>
        <right_flank>AAGTGCGAAAAGCTGAAAATCGCTCTCAAAATAGCTTCAAACGCCCTGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGATGACGGCGAAGGGACACTTGATGGCTATCACACGTCATGGTATCAACAGACAGGAAGTTGGAGCGCTGATGAGATGTTCGTTCGAGGAGACTGTCGATATTTTGATGGAGGCGTCCGTGCATGCCGAGGTGGATCCGGTTAAAGGTACTTTTGAGTCGGAAATTTGGTTTTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTTATGTCACTCTGCGTACAGCTGCCATCCTCGCCTTTATGTATGCATCCGAGGTGCCGCTCTCTCATTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCCCAATCCTCGTCCTCACAAGTTCAACTCCTCGAGGGACATATTTAGACGGAATATCGAGAACATTATTTTTTTTCATGTCCCCCCACCTTTAAAATAGCTAAAAATTGCTTTAAAGTCGATTTGGCCCAAATATGGCAGATTTCAAGTGCGAAAAGCTGAAAATCGCTCTCAAAATAGCTTCAAACGCCCTGAAAGTTTTTCACTTACCGTATCCCGATTCGGCTAAAAATTGACCTATTTTTAGCTGAAAAATCGTTTGAAAATAGGCCAAAATCGACCCAGATTGGTCTGAAATACTCTAGACGAATTTGGCTAAAAATGGACTGATTTTCAGCCCGAAAATCTCAGAAAATCTGTTTTAAACGTTTTGAGCTCCGAATTATTCCCAAAAAAAATCAAAATTACGGTCATTTTAGAGCCAAAAACACTTTAAATCGGTCCAAAATTGCTCAGATTTGCTCTAAAACGATTTTGAAGTACCGTATCACGATTTGGCTGTGAATTGGCTCACTTCCAGCCAAAAATTTATCTAAAATGAGCTGTAATAGATTCAGATTAGTCTGAAACACTCTAGACGAATTTGGCTAAAAATGGCTAAAAAAGCATGTTTGCAGGAGTCTCGGAGAACATTATGCTCGGACAG</canonical>
            <polymorphic>GTGATGACGGCGAAGGGACACTTGATGGCTATCACACGTCATGGTATCAACAGACAGGAAGTTGGAGCGCTGATGAGATGTTCGTTCGAGGAGACTGTCGATATTTTGATGGAGGCGTCCGTGCATGCCGAGGTGGATCCGGTTAAAGGTACTTTTGAGTCGGAAATTTGGTTTTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTGACGGTGTACAACGCTTTATGTCACTCTGCGTACAGCTGCCATCCTCGCCTTTATGTATGCATCCGAGGTGCCGCTCTCTCATTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCCCAATCCTCGTCCTCACAAGTTCAACTCCTCGAGGGACATATTTAGACGGAATATCGAGAACATTATTTTTTTTCATGTCCCCCCACCTTTAAAATAGCTAAAAATTGCTTTAAAGTCGATTTGGCCCAAATATGGCAGATTTYAAGTGCGAAAAGCTGAAAATCGCTCTCAAAATAGCTTCAAACGCCCTGAAAGTTTTTCACTTACCGTATCCCGATTCGGCTAAAAATTGACCTATTTTTAGCTGAAAAATCGTTTGAAAATAGGCCAAAATCGACCCAGATTGGTCTGAAATACTCTAGACGAATTTGGCTAAAAATGGACTGATTTTCAGCCCGAAAATCTCAGAAAATCTGTTTTAAACGTTTTGAGCTCCGAATTATTCCCAAAAAAAATCAAAATTACGGTCATTTTAGAGCCAAAAACACTTTAAATCGGTCCAAAATTGCTCAGATTTGCTCTAAAACGATTTTGAAGTACCGTATCACGATTTGGCTGTGAATTGGCTCACTTCCAGCCAAAAATTTATCTAAAATGAGCTGTAATAGATTCAGATTAGTCTGAAACACTCTAGACGAATTTGGCTAAAAATGGCTAAAAAAGCATGTTTGCAGGAGTCTCGGAGAACATTATGCTCGGACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCACCTTTAAAATAGCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACGTTTAAAACAGATTTTCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>CCCACCTTTAAAATAGCTAAAAATTGCTTTAAAGTCGATTTGGCCCAAATATGGCAGATTTCAAGTGCGAAAAGCTGAAAATCGCTCTCAAAATAGCTTCAAACGCCCTGAAAGTTTTTCACTTACCGTATCCCGATTCGGCTAAAAATTGACCTATTTTTAGCTGAAAAATCGTTTGAAAATAGGCCAAAATCGACCCAGATTGGTCTGAAATACTCTAGACGAATTTGGCTAAAAATGGACTGATTTTCAGCCCGAAAATCTCAGAAAATCTGTTTTAAACGT</canonical_amplicon>
		<polymorphic_amplicon>CCCACCTTTAAAATAGCTAAAAATTGCTTTAAAGTCGATTTGGCCCAAATATGGCAGATTTYAAGTGCGAAAAGCTGAAAATCGCTCTCAAAATAGCTTCAAACGCCCTGAAAGTTTTTCACTTACCGTATCCCGATTCGGCTAAAAATTGACCTATTTTTAGCTGAAAAATCGTTTGAAAATAGGCCAAAATCGACCCAGATTGGTCTGAAATACTCTAGACGAATTTGGCTAAAAATGGACTGATTTTCAGCCCGAAAATCTCAGAAAATCTGTTTTAAACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34584</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>92626</contig_pos>
        <strand>+</strand>
        <context>TCACCCCAAA[G/T]ATTTTTCTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTATTTATCTTCATTTCTCCTTTTTTCTCTGCGTTTCTTCACCCCAAA</left_flank>
        <right_flank>ATTTTTCTCTAATTTTTTTGTTCATTTTTTTGGGTGATTCTCAACCCCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTAATCACCCTAGGTACGAAATTGGACGTTTTTTGAACCCAAACTCAGAACTTAGGGTCAAAATTCCGATTTCCAACTCACTTTGGCTCTAAAATCAACCAAATTGAACTTGAAAAACGCCATAATCGCCTTAATTATCCTAATTAGCATCTTAATTACCCTCGTACTAATTACAGTACTATTGGACGTTTTTGACGCAAAATTTCAATGTTCAGCTGTAAAATCAGCAAAATTGATCCAAAAAAACCCAAAAAGTTGCCTCTAAATAGCCTTAATTACCCCTAATTACAGTACTCTCCATCGTCACCAACGTACTCCCCGTCGTCGCCAACCTACTCGCCGGCATCACCATCCTACAGTCCATCGTCGCCAACGTACGATCCACAGAATTGATTGGCTAATTATCGTCTGGTTAATTGGCCAATTAAGAGGACTTCTTCAATTAATTAATTATTTATCTTCATTTCTCCTTTTTTCTCTGCGTTTCTTCACCCCAAAAATTTTTCTCTAATTTTTTTGTTCATTTTTTTGGGTGATTCTCAACCCCTAATTATGGCTAATTAGCCCCCCAAAAAATCCCCCAATTTTTTTATCCAATTTTGTGTGTCTCCACTCTCCTGGTTTTCAGAGCGTTTTTTGGCTGAAAATCTGGAAATTTTGGCTGAAAATGAGCAATTTCCAGACCCCAAAAAAAGGCTCCGCCCCAAATTCATTGAATTTCATTCGAATCAATAAACTGCACACTCTGTACATGGAAGTTACTGTAATTTCAGACAAAAGAACTAGTTCATGACCTAGAAAACTCAGAGAGTTTCGAAATGAGCCTAAACACGACTAGGCTCCGCCCATTTTAGGGTTACGGTACCATAGAAAGCCTTGGCGGCCGAACTTTTGCACCTGGTGGCCTAGAAAATGGCCCAAAGCTGATGAAACTTATACCAATGCGTTCGTCTTGAAAAGAGCTTCAAAATGAGCCCCAACACGTCTAGGCTCCGCCCG</canonical>
            <polymorphic>CTTAATCACCCTAGGTACGAAATTGGACGTTTTTTGAACCCAAACTCAGAACTTAGGGTCAAAATTCCGATTTCCAACTCACTTTGGCTCTAAAATCAACCAAATTGAACTTGAAAAACGCCATAATCGCCTTAATTATCCTAATTAGCATCTTAATTACCCTCGTACTAATTACAGTACTATTGGACGTTTTTGACGCAAAATTTCAATGTTCAGCTGTAAAATCAGCAAAATTGATCCAAAAAAACCCAAAAAGTTGCCTCTAAATAGCCTTAATTACCCCTAATTACAGTACTCTCCATCGTCACCAACGTACTCCCCGTCGTCGCCAACCTACTCGCCGGCATCACCATCCTACAGTCCATCGTCGCCAACGTACGATCCACAGAATTGATTGGCTAATTATCGTCTGGTTAATTGGCCAATTAAGAGGACTTCTTCAATTAATTAATTATTTATCTTCATTTCTCCTTTTTTCTCTGCGTTTCTTCACCCCAAAKATTTTTCTCTAATTTTTTTGTTCATTTTTTTGGGTGATTCTCAACCCCTAATTATGGCTAATTAGCCCCCCAAAAAATCCCCCAATTTTTTTATCCAATTTTGTGTGTCTCCACTCTCCTGGTTTTCAGAGCGTTTTTTGGCTGAAAATCTGGAAATTTTGGCTGAAAATGAGCAATTTCCAGACCCCAAAAAAAGGCTCCGCCCCAAATTCATTGAATTTCATTCGAATCAATAAACTGCACACTCTGTACATGGAAGTTACTGTAATTTCAGACAAAAGAACTAGTTCATGACCTAGAAAACTCAGAGAGTTTCGAAATGAGCCTAAACACGACTAGGCTCCGCCCATTTTAGGGTTACGGTACCATAGAAAGCCTTGGCGGCCGAACTTTTGCACCTGGTGGCCTAGAAAATGGCCCAAAGCTGATGAAACTTATACCAATGCGTTCGTCTTGAAAAGAGCTTCAAAATGAGCCCCAACACGTCTAGGCTCCGCCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>298 284 155 139 62 53 9</canonical_bands>
                <polymorphic_bands>453 284 139 62 53 9</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>234 104 58 50 50 43 42 40 39 33 32 31 30 24 20 20 18 15 15 13 12 12 11 10 10 9 9 8 4 4</canonical_bands>
                <polymorphic_bands>234 104 61 58 50 43 42 40 39 33 32 31 30 24 20 20 18 15 15 13 12 12 10 10 9 9 8 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAATTGATTGGCTAATTATCGT</pcr_primer_p1>
		<pcr_primer_p2>CTCTGAAAACCAGGAGAGTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGAATTGATTGGCTAATTATCGTCTGGTTAATTGGCCAATTAAGAGGACTTCTTCAATTAATTAATTATTTATCTTCATTTCTCCTTTTTTCTCTGCGTTTCTTCACCCCAAAAATTTTTCTCTAATTTTTTTGTTCATTTTTTTGGGTGATTCTCAACCCCTAATTATGGCTAATTAGCCCCCCAAAAAATCCCCCAATTTTTTTATCCAATTTTGTGTGTCTCCACTCTCCTGGTTTTCAGAG</canonical_amplicon>
		<polymorphic_amplicon>AGAATTGATTGGCTAATTATCGTCTGGTTAATTGGCCAATTAAGAGGACTTCTTCAATTAATTAATTATTTATCTTCATTTCTCCTTTTTTCTCTGCGTTTCTTCACCCCAAAKATTTTTCTCTAATTTTTTTGTTCATTTTTTTGGGTGATTCTCAACCCCTAATTATGGCTAATTAGCCCCCCAAAAAATCCCCCAATTTTTTTATCCAATTTTGTGTGTCTCCACTCTCCTGGTTTTCAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34585</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>92667</contig_pos>
        <strand>+</strand>
        <context>TGGGTGATTC[C/T]CAACCCCTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACCCCAAAAATTTTTCTCTAATTTTTTTGTTCATTTTTTTGGGTGATTC</left_flank>
        <right_flank>CAACCCCTAATTATGGCTAATTAGCCCCCCAAAAAATCCCCCAATTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTCAGAACTTAGGGTCAAAATTCCGATTTCCAACTCACTTTGGCTCTAAAATCAACCAAATTGAACTTGAAAAACGCCATAATCGCCTTAATTATCCTAATTAGCATCTTAATTACCCTCGTACTAATTACAGTACTATTGGACGTTTTTGACGCAAAATTTCAATGTTCAGCTGTAAAATCAGCAAAATTGATCCAAAAAAACCCAAAAAGTTGCCTCTAAATAGCCTTAATTACCCCTAATTACAGTACTCTCCATCGTCACCAACGTACTCCCCGTCGTCGCCAACCTACTCGCCGGCATCACCATCCTACAGTCCATCGTCGCCAACGTACGATCCACAGAATTGATTGGCTAATTATCGTCTGGTTAATTGGCCAATTAAGAGGACTTCTTCAATTAATTAATTATTTATCTTCATTTCTCCTTTTTTCTCTGCGTTTCTTCACCCCAAAAATTTTTCTCTAATTTTTTTGTTCATTTTTTTGGGTGATTCTCAACCCCTAATTATGGCTAATTAGCCCCCCAAAAAATCCCCCAATTTTTTTATCCAATTTTGTGTGTCTCCACTCTCCTGGTTTTCAGAGCGTTTTTTGGCTGAAAATCTGGAAATTTTGGCTGAAAATGAGCAATTTCCAGACCCCAAAAAAAGGCTCCGCCCCAAATTCATTGAATTTCATTCGAATCAATAAACTGCACACTCTGTACATGGAAGTTACTGTAATTTCAGACAAAAGAACTAGTTCATGACCTAGAAAACTCAGAGAGTTTCGAAATGAGCCTAAACACGACTAGGCTCCGCCCATTTTAGGGTTACGGTACCATAGAAAGCCTTGGCGGCCGAACTTTTGCACCTGGTGGCCTAGAAAATGGCCCAAAGCTGATGAAACTTATACCAATGCGTTCGTCTTGAAAAGAGCTTCAAAATGAGCCCCAACACGTCTAGGCTCCGCCCGTTTTGAAATTTCAGGCGCGTCGCGGTCGTGCGTCGCGTGTC</canonical>
            <polymorphic>AAACTCAGAACTTAGGGTCAAAATTCCGATTTCCAACTCACTTTGGCTCTAAAATCAACCAAATTGAACTTGAAAAACGCCATAATCGCCTTAATTATCCTAATTAGCATCTTAATTACCCTCGTACTAATTACAGTACTATTGGACGTTTTTGACGCAAAATTTCAATGTTCAGCTGTAAAATCAGCAAAATTGATCCAAAAAAACCCAAAAAGTTGCCTCTAAATAGCCTTAATTACCCCTAATTACAGTACTCTCCATCGTCACCAACGTACTCCCCGTCGTCGCCAACCTACTCGCCGGCATCACCATCCTACAGTCCATCGTCGCCAACGTACGATCCACAGAATTGATTGGCTAATTATCGTCTGGTTAATTGGCCAATTAAGAGGACTTCTTCAATTAATTAATTATTTATCTTCATTTCTCCTTTTTTCTCTGCGTTTCTTCACCCCAAAAATTTTTCTCTAATTTTTTTGTTCATTTTTTTGGGTGATTCYCAACCCCTAATTATGGCTAATTAGCCCCCCAAAAAATCCCCCAATTTTTTTATCCAATTTTGTGTGTCTCCACTCTCCTGGTTTTCAGAGCGTTTTTTGGCTGAAAATCTGGAAATTTTGGCTGAAAATGAGCAATTTCCAGACCCCAAAAAAAGGCTCCGCCCCAAATTCATTGAATTTCATTCGAATCAATAAACTGCACACTCTGTACATGGAAGTTACTGTAATTTCAGACAAAAGAACTAGTTCATGACCTAGAAAACTCAGAGAGTTTCGAAATGAGCCTAAACACGACTAGGCTCCGCCCATTTTAGGGTTACGGTACCATAGAAAGCCTTGGCGGCCGAACTTTTGCACCTGGTGGCCTAGAAAATGGCCCAAAGCTGATGAAACTTATACCAATGCGTTCGTCTTGAAAAGAGCTTCAAAATGAGCCCCAACACGTCTAGGCTCCGCCCGTTTTGAAATTTCAGGCGCGTCGCGGTCGTGCGTCGCGTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAATTGATTGGCTAATTATCGT</pcr_primer_p1>
		<pcr_primer_p2>CTCTGAAAACCAGGAGAGTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGAATTGATTGGCTAATTATCGTCTGGTTAATTGGCCAATTAAGAGGACTTCTTCAATTAATTAATTATTTATCTTCATTTCTCCTTTTTTCTCTGCGTTTCTTCACCCCAAAAATTTTTCTCTAATTTTTTTGTTCATTTTTTTGGGTGATTCTCAACCCCTAATTATGGCTAATTAGCCCCCCAAAAAATCCCCCAATTTTTTTATCCAATTTTGTGTGTCTCCACTCTCCTGGTTTTCAGAG</canonical_amplicon>
		<polymorphic_amplicon>AGAATTGATTGGCTAATTATCGTCTGGTTAATTGGCCAATTAAGAGGACTTCTTCAATTAATTAATTATTTATCTTCATTTCTCCTTTTTTCTCTGCGTTTCTTCACCCCAAAAATTTTTCTCTAATTTTTTTGTTCATTTTTTTGGGTGATTCYCAACCCCTAATTATGGCTAATTAGCCCCCCAAAAAATCCCCCAATTTTTTTATCCAATTTTGTGTGTCTCCACTCTCCTGGTTTTCAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34586</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>92914</contig_pos>
        <strand>+</strand>
        <context>AAAGAACTAG[G/T]TCATGACCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTGCACACTCTGTACATGGAAGTTACTGTAATTTCAGACAAAAGAACTAG</left_flank>
        <right_flank>TCATGACCTAGAAAACTCAGAGAGTTTCGAAATGAGCCTAAACACGACTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGTACTCTCCATCGTCACCAACGTACTCCCCGTCGTCGCCAACCTACTCGCCGGCATCACCATCCTACAGTCCATCGTCGCCAACGTACGATCCACAGAATTGATTGGCTAATTATCGTCTGGTTAATTGGCCAATTAAGAGGACTTCTTCAATTAATTAATTATTTATCTTCATTTCTCCTTTTTTCTCTGCGTTTCTTCACCCCAAAAATTTTTCTCTAATTTTTTTGTTCATTTTTTTGGGTGATTCTCAACCCCTAATTATGGCTAATTAGCCCCCCAAAAAATCCCCCAATTTTTTTATCCAATTTTGTGTGTCTCCACTCTCCTGGTTTTCAGAGCGTTTTTTGGCTGAAAATCTGGAAATTTTGGCTGAAAATGAGCAATTTCCAGACCCCAAAAAAAGGCTCCGCCCCAAATTCATTGAATTTCATTCGAATCAATAAACTGCACACTCTGTACATGGAAGTTACTGTAATTTCAGACAAAAGAACTAGTTCATGACCTAGAAAACTCAGAGAGTTTCGAAATGAGCCTAAACACGACTAGGCTCCGCCCATTTTAGGGTTACGGTACCATAGAAAGCCTTGGCGGCCGAACTTTTGCACCTGGTGGCCTAGAAAATGGCCCAAAGCTGATGAAACTTATACCAATGCGTTCGTCTTGAAAAGAGCTTCAAAATGAGCCCCAACACGTCTAGGCTCCGCCCGTTTTGAAATTTCAGGCGCGTCGCGGTCGTGCGTCGCGTGTCTAGCTGAATTTTCAAAGTGCGCGGAGCCTAGTCGATATGGGGCTCATTTTGAACCTCNNNNNNNNNNCATCTGGTTGTCCGGTGGTGATGACTGGTATATGGAAATGAGGGACGATTCGATTCGGAGGAGAGATGGGAGAGAATGATGAATTGGACTTTTTCTTCTTTTTGGAATGGGGAACACAAAAGTGCGCAATTTTTTACTCTGAATTGGATTGTTATGTGACAGGTGAATGGACGAGAAAAT</canonical>
            <polymorphic>ACAGTACTCTCCATCGTCACCAACGTACTCCCCGTCGTCGCCAACCTACTCGCCGGCATCACCATCCTACAGTCCATCGTCGCCAACGTACGATCCACAGAATTGATTGGCTAATTATCGTCTGGTTAATTGGCCAATTAAGAGGACTTCTTCAATTAATTAATTATTTATCTTCATTTCTCCTTTTTTCTCTGCGTTTCTTCACCCCAAAAATTTTTCTCTAATTTTTTTGTTCATTTTTTTGGGTGATTCTCAACCCCTAATTATGGCTAATTAGCCCCCCAAAAAATCCCCCAATTTTTTTATCCAATTTTGTGTGTCTCCACTCTCCTGGTTTTCAGAGCGTTTTTTGGCTGAAAATCTGGAAATTTTGGCTGAAAATGAGCAATTTCCAGACCCCAAAAAAAGGCTCCGCCCCAAATTCATTGAATTTCATTCGAATCAATAAACTGCACACTCTGTACATGGAAGTTACTGTAATTTCAGACAAAAGAACTAGKTCATGACCTAGAAAACTCAGAGAGTTTCGAAATGAGCCTAAACACGACTAGGCTCCGCCCATTTTAGGGTTACGGTACCATAGAAAGCCTTGGCGGCCGAACTTTTGCACCTGGTGGCCTAGAAAATGGCCCAAAGCTGATGAAACTTATACCAATGCGTTCGTCTTGAAAAGAGCTTCAAAATGAGCCCCAACACGTCTAGGCTCCGCCCGTTTTGAAATTTCAGGCGCGTCGCGGTCGTGCGTCGCGTGTCTAGCTGAATTTTCAAAGTGCGCGGAGCCTAGTCGATATGGGGCTCATTTTGAACCTCNNNNNNNNNNCATCTGGTTGTCCGGTGGTGATGACTGGTATATGGAAATGAGGGACGATTCGATTCGGAGGAGAGATGGGAGAGAATGATGAATTGGACTTTTTCTTCTTTTTGGAATGGGGAACACAAAAGTGCGCAATTTTTTACTCTGAATTGGATTGTTATGTGACAGGTGAATGGACGAGAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACTAGT</site>
                <isoschizomers>
                    <enzyme>AhlI</enzyme>
                    <enzyme>BcuI</enzyme>
                    <enzyme>SpeI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCAATAAACTGCACACTCTGT</pcr_primer_p1>
		<pcr_primer_p2>CCATATACCAGTCATCACCAC</pcr_primer_p2>
		<pcr_amplicon_size>416</pcr_amplicon_size>
		<canonical_amplicon>AATCAATAAACTGCACACTCTGTACATGGAAGTTACTGTAATTTCAGACAAAAGAACTAGTTCATGACCTAGAAAACTCAGAGAGTTTCGAAATGAGCCTAAACACGACTAGGCTCCGCCCATTTTAGGGTTACGGTACCATAGAAAGCCTTGGCGGCCGAACTTTTGCACCTGGTGGCCTAGAAAATGGCCCAAAGCTGATGAAACTTATACCAATGCGTTCGTCTTGAAAAGAGCTTCAAAATGAGCCCCAACACGTCTAGGCTCCGCCCGTTTTGAAATTTCAGGCGCGTCGCGGTCGTGCGTCGCGTGTCTAGCTGAATTTTCAAAGTGCGCGGAGCCTAGTCGATATGGGGCTCATTTTGAACCTCNNNNNNNNNNCATCTGGTTGTCCGGTGGTGATGACTGGTATATGG</canonical_amplicon>
		<polymorphic_amplicon>AATCAATAAACTGCACACTCTGTACATGGAAGTTACTGTAATTTCAGACAAAAGAACTAGKTCATGACCTAGAAAACTCAGAGAGTTTCGAAATGAGCCTAAACACGACTAGGCTCCGCCCATTTTAGGGTTACGGTACCATAGAAAGCCTTGGCGGCCGAACTTTTGCACCTGGTGGCCTAGAAAATGGCCCAAAGCTGATGAAACTTATACCAATGCGTTCGTCTTGAAAAGAGCTTCAAAATGAGCCCCAACACGTCTAGGCTCCGCCCGTTTTGAAATTTCAGGCGCGTCGCGGTCGTGCGTCGCGTGTCTAGCTGAATTTTCAAAGTGCGCGGAGCCTAGTCGATATGGGGCTCATTTTGAACCTCNNNNNNNNNNCATCTGGTTGTCCGGTGGTGATGACTGGTATATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34587</snp_id>
        <super_contig>c009200845.Contig2</super_contig>
        <contig_pos>95473</contig_pos>
        <strand></strand>
        <context>agtgaacgga[G/A]cctagtcgag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGACACGCGACGCACGACCGCGACGCAGCCGATAATTCAAAGTGAACGGA</left_flank>
        <right_flank>CCTAGTCGAGTTTAGGTTCATTTTGAAGCACTTTTCACGGCAAATACAGT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGGGTCTAGAAAGGGGCGTAGCTGAAATTTTTTGCTATTTTCAGATTTTTGAGGTTTTGTGCTTCAAAATAAGCCTAAACGTGGCACATTTTGACCTATTTTGAAGGAATTTAGGGTTCAAAAATGAGGGGGATTCTGAAAATTGGGGTGGTGGCCGAAGTTTTGCATCTAGTGGCCTAGAAAATATTTCCACGTTAATGAAAATTATACCACTCTGTTTGTAATAAAAAACGCTTCGAAATGAGCATAAACACGACTAGGCTACGCCCATTTTAGTGGTTACTGTAGCCTGCTAACCTCAGAGCTTCGCTGATGGCCGAACTTTTGCATCTAGTGGCCTAGAAAATTGCCCAAGTCTGATAAAAGTTATACCATTCTCTTTCTCATAGAAACCGCTTCAAAATGAGCCTAAACACGACCAGGCTCCGCCCAGCTTGAAATTTCACCTAGACACGCGACGCACGACCGCGACGCAGCCGATAATTCAAAGTGAACGGAGCCTAGTCGAGTTTAGGTTCATTTTGAAGCACTTTTCACGGCAAATACAGTAAACGTTTTTTTAATTTGCCGAGAACGATTTTCTAGGCCACCAGGTGCAAAAGTTATCCCAGCAAGAGAATGCTAGGCATTTTCGGTACTGTACCCCTTAAAATGGACCAAAATGGGGCGTGTTTAGACTCATTTTTAAGCCTAAACCATGTAAAATTCAAAAAAGCTAGAAAGTCAATCAATAAATCAATATTTTTCCAGGTATGCGTCACTCTACCAATGGTCTACAACTACGTGCATCATGTGAAAAGAACTATGCACAATGAAATCACATTTTGCAAGGTAAGCGGACTTCAGAATCATATAATTTAGCTAAAAATTCAGCTAGAAAAACGTTTTTCAAGTTTCCCAAAAAAAAATTGTTTCCAAATTTTTGCGGATTTTTTTGTTTGGTGGCCGAACTTTTGCACCTCGTGGCCTAGATTTTAATTTTCACCCCATGAAAACTAT</canonical>
            <polymorphic>CGGGGTCTAGAAAGGGGCGTAGCTGAAATTTTTTGCTATTTTCAGATTTTTGAGGTTTTGTGCTTCAAAATAAGCCTAAACGTGGCACATTTTGACCTATTTTGAAGGAATTTAGGGTTCAAAAATGAGGGGGATTCTGAAAATTGGGGTGGTGGCCGAAGTTTTGCATCTAGTGGCCTAGAAAATATTTCCACGTTAATGAAAATTATACCACTCTGTTTGTAATAAAAAACGCTTCGAAATGAGCATAAACACGACTAGGCTACGCCCATTTTAGTGGTTACTGTAGCCTGCTAACCTCAGAGCTTCGCTGATGGCCGAACTTTTGCATCTAGTGGCCTAGAAAATTGCCCAAGTCTGATAAAAGTTATACCATTCTCTTTCTCATAGAAACCGCTTCAAAATGAGCCTAAACACGACCAGGCTCCGCCCAGCTTGAAATTTCACCTAGACACGCGACGCACGACCGCGACGCAGCCGATAATTCAAAGTGAACGGARCCTAGTCGAGTTTAGGTTCATTTTGAAGCACTTTTCACGGCAAATACAGTAAACGTTTTTTTAATTTGCCGAGAACGATTTTCTAGGCCACCAGGTGCAAAAGTTATCCCAGCAAGAGAATGCTAGGCATTTTCGGTACTGTACCCCTTAAAATGGACCAAAATGGGGCGTGTTTAGACTCATTTTTAAGCCTAAACCATGTAAAATTCAAAAAAGCTAGAAAGTCAATCAATAAATCAATATTTTTCCAGGTATGCGTCACTCTACCAATGGTCTACAACTACGTGCATCATGTGAAAAGAACTATGCACAATGAAATCACATTTTGCAAGGTAAGCGGACTTCAGAATCATATAATTTAGCTAAAAATTCAGCTAGAAAAACGTTTTTCAAGTTTCCCAAAAAAAAATTGTTTCCAAATTTTTGCGGATTTTTTTGTTTGGTGGCCGAACTTTTGCACCTCGTGGCCTAGATTTTAATTTTCACCCCATGAAAACTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>146 103 87 86 81 72 70 52 43 33 27 26 23 22 21 21 21 16 16 12 12 10</canonical_bands>
                <polymorphic_bands>146 110 103 86 81 72 70 52 43 33 27 26 22 21 21 21 16 16 12 12 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTCGGGGTCTAGAAAG</pcr_primer_p1>
		<pcr_primer_p2>TCTTGCTGGGATAACTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>623</pcr_amplicon_size>
		<canonical_amplicon>AGCCTAGTCGAGTTTAGGTTCATTTTGAAGCACTTTTCACGGCAAATACAGTAAACGTTTTTTTAATTTGCCGAGAACGATTTTCTAGGCCACCAGGTGCAAAAGTTATCCCAGCAAGA</canonical_amplicon>
		<polymorphic_amplicon>ARCCTAGTCGAGTTTAGGTTCATTTTGAAGCACTTTTCACGGCAAATACAGTAAACGTTTTTTTAATTTGCCGAGAACGATTTTCTAGGCCACCAGGTGCAAAAGTTATCCCAGCAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34588</snp_id>
        <super_contig>c009201005.Contig1</super_contig>
        <contig_pos>1550</contig_pos>
        <strand></strand>
        <context>cgtagtgaaa[A/G]ccggccgtgG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTCTTCAAGTATTTTTTCTGAAGCCGCGGCCGGCTCGGCCGTAGTGAAA</left_flank>
        <right_flank>CCGGCCGTGGCACAGCCTTGGAATGGATCGAAGGAAGACATCTTGTCGTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGGTTCCTATTTCAACCGCGCGCGAACGCGGAGCGTCCGTAACGGATTGTTCGCGAATCACCTGTGTTCAAGTACTATCCTGAAATCTTATCTTGACATCACTTTTCTTTGATTGGCACCAAAATTATACACAAAAATGGGTATGTTAAGTCTTTAAGATACATCAATAGATAAGGTACATACAGTGGCGAGAAGTGGTGAGGAGAATTTTTTCGGGAATTAAACAATTGACTTGAAATTAGCTGTGAAATCCAAAAACAAAAATAAGTTTTTTGAAAATTTCTCACTTTCAGTATTTTCAGAGCAGTTTCAGATGTATTAAAAATCATTTAGTTTTTGAAGAATTTATTTTTTTGTCCTATTTTTCAAAAAAAAATCTACGTTTTTCATGAAACAATTATTTTAACAGGCCGTGAAAAGCCGCACGGCCGGCGTCGGCTAGCCGCGGCTTCTTCAAGTATTTTTTCTGAAGCCGCGGCCGGCTCGGCCGTAGTGAAAACCGGCCGTGGCACAGCCTTGGAATGGATCGAAGGAAGACATCTTGTCGTTGGTTTCTTCAGCTTATATAGCGACGATTGATCAGATAGTAGATAAGATAAGATGATTAGGCCACCGATGTGGTTGACACGTTGAATAATACCGAATGTATATTTACTTAAAGTTGAGGAAGAAATGGCAGGACCATTCCTTCCGCAACACACTGAATTTACAGAAATAAGTTTCGTTTACTACTGTAGTGATTTTGAGACAAGGCCTCGAAAATGGACCGGGAAGCCTCCCGCGAAATTTTCCAGGTCCCACTTTTTTTAATTCGACAATATACTCACATGGCGGCCCGAATCTCATGATCTTTTTCCTCTAGATAAATTTAAAAGGAACTGTAGATTGCGATAATTCTGAAACTCATTCTTCTCAGCCTCTCCCTAAATGTGTGAAACATCTCGGAGTTTAGATTCTTGATCAACACCTTGCGAACTTCGTACTAAAAAAGTTATTGAC</canonical>
            <polymorphic>GCGGTTCCTATTTCAACCGCGCGCGAACGCGGAGCGTCCGTAACGGATTGTTCGCGAATCACCTGTGTTCAAGTACTATCCTGAAATCTTATCTTGACATCACTTTTCTTTGATTGGCACCAAAATTATACACAAAAATGGGTATGTTAAGTCTTTAAGATACATCAATAGATAAGGTACATACAGTGGCGAGAAGTGGTGAGGAGAATTTTTTCGGGAATTAAACAATTGACTTGAAATTAGCTGTGAAATCCAAAAACAAAAATAAGTTTTTTGAAAATTTCTCACTTTCAGTATTTTCAGAGCAGTTTCAGATGTATTAAAAATCATTTAGTTTTTGAAGAATTTATTTTTTTGTCCTATTTTTCAAAAAAAAATCTACGTTTTTCATGAAACAATTATTTTAACAGGCCGTGAAAAGCCGCACGGCCGGCGTCGGCTAGCCGCGGCTTCTTCAAGTATTTTTTCTGAAGCCGCGGCCGGCTCGGCCGTAGTGAAARCCGGCCGTGGCACAGCCTTGGAATGGATCGAAGGAAGACATCTTGTCGTTGGTTTCTTCAGCTTATATAGCGACGATTGATCAGATAGTAGATAAGATAAGATGATTAGGCCACCGATGTGGTTGACACGTTGAATAATACCGAATGTATATTTACTTAAAGTTGAGGAAGAAATGGCAGGACCATTCCTTCCGCAACACACTGAATTTACAGAAATAAGTTTCGTTTACTACTGTAGTGATTTTGAGACAAGGCCTCGAAAATGGACCGGGAAGCCTCCCGCGAAATTTTCCAGGTCCCACTTTTTTTAATTCGACAATATACTCACATGGCGGCCCGAATCTCATGATCTTTTTCCTCTAGATAAATTTAAAAGGAACTGTAGATTGCGATAATTCTGAAACTCATTCTTCTCAGCCTCTCCCTAAATGTGTGAAACATCTCGGAGTTTAGATTCTTGATCAACACCTTGCGAACTTCGTACTAAAAAAGTTATTGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>500 429 50 21</canonical_bands>
                <polymorphic_bands>521 429 50</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAGCAGTTTCAGATGTAT</pcr_primer_p1>
		<pcr_primer_p2>AAGAAACCAACGACAAGATGT</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAGCAGTTTCAGATGTATTAAAAATCATTTAGTTTTTGAAGAATTTATTTTTTTGTCCTATTTTTCAAAAAAAAATCTACGTTTTTCATGAAACAATTATTTTAACAGGCCGTGAAAAGCCGCACGGCCGGCGTCGGCTAGCCGCGGCTTCTTCAAGTATTTTTTCTGAAGCCGCGGCCGGCTCGGCCGTAGTGAAAACCGGCCGTGGCACAGCCTTGGAATGGATCGAAGGAAGACATCTTGTCGTTGGTTTCTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAGCAGTTTCAGATGTATTAAAAATCATTTAGTTTTTGAAGAATTTATTTTTTTGTCCTATTTTTCAAAAAAAAATCTACGTTTTTCATGAAACAATTATTTTAACAGGCCGTGAAAAGCCGCACGGCCGGCGTCGGCTAGCCGCGGCTTCTTCAAGTATTTTTTCTGAAGCCGCGGCCGGCTCGGCCGTAGTGAAARCCGGCCGTGGCACAGCCTTGGAATGGATCGAAGGAAGACATCTTGTCGTTGGTTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34589</snp_id>
        <super_contig>c009201005.Contig1</super_contig>
        <contig_pos>1583</contig_pos>
        <strand>+</strand>
        <context>ATGGATCGAA[G/T]GAAGACATCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCTCGGCCGTAGTGAAAACCGGCCGTGGCACAGCCTTGGAATGGATCGAA</left_flank>
        <right_flank>GAAGACATCTTGTCGTTGGTTTCTTCAGCTTATATAGCGACGATTGATCA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGTCCGTAACGGATTGTTCGCGAATCACCTGTGTTCAAGTACTATCCTGAAATCTTATCTTGACATCACTTTTCTTTGATTGGCACCAAAATTATACACAAAAATGGGTATGTTAAGTCTTTAAGATACATCAATAGATAAGGTACATACAGTGGCGAGAAGTGGTGAGGAGAATTTTTTCGGGAATTAAACAATTGACTTGAAATTAGCTGTGAAATCCAAAAACAAAAATAAGTTTTTTGAAAATTTCTCACTTTCAGTATTTTCAGAGCAGTTTCAGATGTATTAAAAATCATTTAGTTTTTGAAGAATTTATTTTTTTGTCCTATTTTTCAAAAAAAAATCTACGTTTTTCATGAAACAATTATTTTAACAGGCCGTGAAAAGCCGCACGGCCGGCGTCGGCTAGCCGCGGCTTCTTCAAGTATTTTTTCTGAAGCCGCGGCCGGCTCGGCCGTAGTGAAAACCGGCCGTGGCACAGCCTTGGAATGGATCGAAGGAAGACATCTTGTCGTTGGTTTCTTCAGCTTATATAGCGACGATTGATCAGATAGTAGATAAGATAAGATGATTAGGCCACCGATGTGGTTGACACGTTGAATAATACCGAATGTATATTTACTTAAAGTTGAGGAAGAAATGGCAGGACCATTCCTTCCGCAACACACTGAATTTACAGAAATAAGTTTCGTTTACTACTGTAGTGATTTTGAGACAAGGCCTCGAAAATGGACCGGGAAGCCTCCCGCGAAATTTTCCAGGTCCCACTTTTTTTAATTCGACAATATACTCACATGGCGGCCCGAATCTCATGATCTTTTTCCTCTAGATAAATTTAAAAGGAACTGTAGATTGCGATAATTCTGAAACTCATTCTTCTCAGCCTCTCCCTAAATGTGTGAAACATCTCGGAGTTTAGATTCTTGATCAACACCTTGCGAACTTCGTACTAAAAAAGTTATTGACGCCCTCATATCTGTAAATGTCCAACTCTAACTC</canonical>
            <polymorphic>GCGTCCGTAACGGATTGTTCGCGAATCACCTGTGTTCAAGTACTATCCTGAAATCTTATCTTGACATCACTTTTCTTTGATTGGCACCAAAATTATACACAAAAATGGGTATGTTAAGTCTTTAAGATACATCAATAGATAAGGTACATACAGTGGCGAGAAGTGGTGAGGAGAATTTTTTCGGGAATTAAACAATTGACTTGAAATTAGCTGTGAAATCCAAAAACAAAAATAAGTTTTTTGAAAATTTCTCACTTTCAGTATTTTCAGAGCAGTTTCAGATGTATTAAAAATCATTTAGTTTTTGAAGAATTTATTTTTTTGTCCTATTTTTCAAAAAAAAATCTACGTTTTTCATGAAACAATTATTTTAACAGGCCGTGAAAAGCCGCACGGCCGGCGTCGGCTAGCCGCGGCTTCTTCAAGTATTTTTTCTGAAGCCGCGGCCGGCTCGGCCGTAGTGAAAACCGGCCGTGGCACAGCCTTGGAATGGATCGAAKGAAGACATCTTGTCGTTGGTTTCTTCAGCTTATATAGCGACGATTGATCAGATAGTAGATAAGATAAGATGATTAGGCCACCGATGTGGTTGACACGTTGAATAATACCGAATGTATATTTACTTAAAGTTGAGGAAGAAATGGCAGGACCATTCCTTCCGCAACACACTGAATTTACAGAAATAAGTTTCGTTTACTACTGTAGTGATTTTGAGACAAGGCCTCGAAAATGGACCGGGAAGCCTCCCGCGAAATTTTCCAGGTCCCACTTTTTTTAATTCGACAATATACTCACATGGCGGCCCGAATCTCATGATCTTTTTCCTCTAGATAAATTTAAAAGGAACTGTAGATTGCGATAATTCTGAAACTCATTCTTCTCAGCCTCTCCCTAAATGTGTGAAACATCTCGGAGTTTAGATTCTTGATCAACACCTTGCGAACTTCGTACTAAAAAAGTTATTGACGCCCTCATATCTGTAAATGTCCAACTCTAACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAGCAGTTTCAGATGTAT</pcr_primer_p1>
		<pcr_primer_p2>CTATCTGATCAATCGTCGCTAT</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAGCAGTTTCAGATGTATTAAAAATCATTTAGTTTTTGAAGAATTTATTTTTTTGTCCTATTTTTCAAAAAAAAATCTACGTTTTTCATGAAACAATTATTTTAACAGGCCGTGAAAAGCCGCACGGCCGGCGTCGGCTAGCCGCGGCTTCTTCAAGTATTTTTTCTGAAGCCGCGGCCGGCTCGGCCGTAGTGAAAACCGGCCGTGGCACAGCCTTGGAATGGATCGAAGGAAGACATCTTGTCGTTGGTTTCTTCAGCTTATATAGCGACGATTGATCAGATAG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAGCAGTTTCAGATGTATTAAAAATCATTTAGTTTTTGAAGAATTTATTTTTTTGTCCTATTTTTCAAAAAAAAATCTACGTTTTTCATGAAACAATTATTTTAACAGGCCGTGAAAAGCCGCACGGCCGGCGTCGGCTAGCCGCGGCTTCTTCAAGTATTTTTTCTGAAGCCGCGGCCGGCTCGGCCGTAGTGAAAACCGGCCGTGGCACAGCCTTGGAATGGATCGAAKGAAGACATCTTGTCGTTGGTTTCTTCAGCTTATATAGCGACGATTGATCAGATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34590</snp_id>
        <super_contig>c009201005.Contig1</super_contig>
        <contig_pos>1759</contig_pos>
        <strand></strand>
        <context>Acactgaatt[T/C]acagaaataa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAGTTGAGGAAGAAATGGCAGGACCATTCCTTCCGCAACACACTGAATT</left_flank>
        <right_flank>ACAGAAATAAGTTTCGTTTACTACTGTAGTGATTTTGAGACAAGGCCTCG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTCGGGAATTAAACAATTGACTTGAAATTAGCTGTGAAATCCAAAAACAAAAATAAGTTTTTTGAAAATTTCTCACTTTCAGTATTTTCAGAGCAGTTTCAGATGTATTAAAAATCATTTAGTTTTTGAAGAATTTATTTTTTTGTCCTATTTTTCAAAAAAAAATCTACGTTTTTCATGAAACAATTATTTTAACAGGCCGTGAAAAGCCGCACGGCCGGCGTCGGCTAGCCGCGGCTTCTTCAAGTATTTTTTCTGAAGCCGCGGCCGGCTCGGCCGTAGTGAAAACCGGCCGTGGCACAGCCTTGGAATGGATCGAAGGAAGACATCTTGTCGTTGGTTTCTTCAGCTTATATAGCGACGATTGATCAGATAGTAGATAAGATAAGATGATTAGGCCACCGATGTGGTTGACACGTTGAATAATACCGAATGTATATTTACTTAAAGTTGAGGAAGAAATGGCAGGACCATTCCTTCCGCAACACACTGAATTTACAGAAATAAGTTTCGTTTACTACTGTAGTGATTTTGAGACAAGGCCTCGAAAATGGACCGGGAAGCCTCCCGCGAAATTTTCCAGGTCCCACTTTTTTTAATTCGACAATATACTCACATGGCGGCCCGAATCTCATGATCTTTTTCCTCTAGATAAATTTAAAAGGAACTGTAGATTGCGATAATTCTGAAACTCATTCTTCTCAGCCTCTCCCTAAATGTGTGAAACATCTCGGAGTTTAGATTCTTGATCAACACCTTGCGAACTTCGTACTAAAAAAGTTATTGACGCCCTCATATCTGTAAATGTCCAACTCTAACTCATCAGTAAAACCTGTAAATTCAAGCATGACAAAATAGAATTTAAAATACACCGAAGAAATCCACTAATTCTTGTTTCTCTTTCTCGTTCCATTTCACCATTGTTTTTCTCCAATCATCGCCTTTTTTCGAATGAGTTTTATAAAGCAAAAAATTCTGGAAAAGTATAAATACTGAA</canonical>
            <polymorphic>TTTTTCGGGAATTAAACAATTGACTTGAAATTAGCTGTGAAATCCAAAAACAAAAATAAGTTTTTTGAAAATTTCTCACTTTCAGTATTTTCAGAGCAGTTTCAGATGTATTAAAAATCATTTAGTTTTTGAAGAATTTATTTTTTTGTCCTATTTTTCAAAAAAAAATCTACGTTTTTCATGAAACAATTATTTTAACAGGCCGTGAAAAGCCGCACGGCCGGCGTCGGCTAGCCGCGGCTTCTTCAAGTATTTTTTCTGAAGCCGCGGCCGGCTCGGCCGTAGTGAAAACCGGCCGTGGCACAGCCTTGGAATGGATCGAAGGAAGACATCTTGTCGTTGGTTTCTTCAGCTTATATAGCGACGATTGATCAGATAGTAGATAAGATAAGATGATTAGGCCACCGATGTGGTTGACACGTTGAATAATACCGAATGTATATTTACTTAAAGTTGAGGAAGAAATGGCAGGACCATTCCTTCCGCAACACACTGAATTYACAGAAATAAGTTTCGTTTACTACTGTAGTGATTTTGAGACAAGGCCTCGAAAATGGACCGGGAAGCCTCCCGCGAAATTTTCCAGGTCCCACTTTTTTTAATTCGACAATATACTCACATGGCGGCCCGAATCTCATGATCTTTTTCCTCTAGATAAATTTAAAAGGAACTGTAGATTGCGATAATTCTGAAACTCATTCTTCTCAGCCTCTCCCTAAATGTGTGAAACATCTCGGAGTTTAGATTCTTGATCAACACCTTGCGAACTTCGTACTAAAAAAGTTATTGACGCCCTCATATCTGTAAATGTCCAACTCTAACTCATCAGTAAAACCTGTAAATTCAAGCATGACAAAATAGAATTTAAAATACACCGAAGAAATCCACTAATTCTTGTTTCTCTTTCTCGTTCCATTTCACCATTGTTTTTCTCCAATCATCGCCTTTTTTCGAATGAGTTTTATAAAGCAAAAAATTCTGGAAAAGTATAAATACTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>361 183 113 81 81 69 65 26 21</canonical_bands>
                <polymorphic_bands>442 183 113 81 69 65 26 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGGTTGACACGTTGAATAATAC</pcr_primer_p1>
		<pcr_primer_p2>TCTAGAGGAAAAAGATCATGAGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTGGTTGACACGTTGAATAATACCGAATGTATATTTACTTAAAGTTGAGGAAGAAATGGCAGGACCATTCCTTCCGCAACACACTGAATTTACAGAAATAAGTTTCGTTTACTACTGTAGTGATTTTGAGACAAGGCCTCGAAAATGGACCGGGAAGCCTCCCGCGAAATTTTCCAGGTCCCACTTTTTTTAATTCGACAATATACTCACATGGCGGCCCGAATCTCATGATCTTTTTCCTCTAGA</canonical_amplicon>
		<polymorphic_amplicon>GTGGTTGACACGTTGAATAATACCGAATGTATATTTACTTAAAGTTGAGGAAGAAATGGCAGGACCATTCCTTCCGCAACACACTGAATTYACAGAAATAAGTTTCGTTTACTACTGTAGTGATTTTGAGACAAGGCCTCGAAAATGGACCGGGAAGCCTCCCGCGAAATTTTCCAGGTCCCACTTTTTTTAATTCGACAATATACTCACATGGCGGCCCGAATCTCATGATCTTTTTCCTCTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34591</snp_id>
        <super_contig>c009201005.Contig1</super_contig>
        <contig_pos>1922</contig_pos>
        <strand>+</strand>
        <context>AGATAAATTT[A/T]AAAGGAACTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TACTCACATGGCGGCCCGAATCTCATGATCTTTTTCCTCTAGATAAATTT</left_flank>
        <right_flank>AAAGGAACTGTAGATTGCGATAATTCTGAAACTCATTCTTCTCAGCCTCT</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATCTACGTTTTTCATGAAACAATTATTTTAACAGGCCGTGAAAAGCCGCACGGCCGGCGTCGGCTAGCCGCGGCTTCTTCAAGTATTTTTTCTGAAGCCGCGGCCGGCTCGGCCGTAGTGAAAACCGGCCGTGGCACAGCCTTGGAATGGATCGAAGGAAGACATCTTGTCGTTGGTTTCTTCAGCTTATATAGCGACGATTGATCAGATAGTAGATAAGATAAGATGATTAGGCCACCGATGTGGTTGACACGTTGAATAATACCGAATGTATATTTACTTAAAGTTGAGGAAGAAATGGCAGGACCATTCCTTCCGCAACACACTGAATTTACAGAAATAAGTTTCGTTTACTACTGTAGTGATTTTGAGACAAGGCCTCGAAAATGGACCGGGAAGCCTCCCGCGAAATTTTCCAGGTCCCACTTTTTTTAATTCGACAATATACTCACATGGCGGCCCGAATCTCATGATCTTTTTCCTCTAGATAAATTTAAAAGGAACTGTAGATTGCGATAATTCTGAAACTCATTCTTCTCAGCCTCTCCCTAAATGTGTGAAACATCTCGGAGTTTAGATTCTTGATCAACACCTTGCGAACTTCGTACTAAAAAAGTTATTGACGCCCTCATATCTGTAAATGTCCAACTCTAACTCATCAGTAAAACCTGTAAATTCAAGCATGACAAAATAGAATTTAAAATACACCGAAGAAATCCACTAATTCTTGTTTCTCTTTCTCGTTCCATTTCACCATTGTTTTTCTCCAATCATCGCCTTTTTTCGAATGAGTTTTATAAAGCAAAAAATTCTGGAAAAGTATAAATACTGAAACAATTTGCTCTTTTCTCATTTTCAGACTCAAAGATCACTGGAATATTTGTGTAATCTATCGAACCCGGATTCCCTCCCTCAACTTCGTAACTCTTTTTTCTTTTTTTGTCTGATAAGAAATACACAAATTAACACAAATTAACAGTATGATGCATGGAGGTC</canonical>
            <polymorphic>AAAAATCTACGTTTTTCATGAAACAATTATTTTAACAGGCCGTGAAAAGCCGCACGGCCGGCGTCGGCTAGCCGCGGCTTCTTCAAGTATTTTTTCTGAAGCCGCGGCCGGCTCGGCCGTAGTGAAAACCGGCCGTGGCACAGCCTTGGAATGGATCGAAGGAAGACATCTTGTCGTTGGTTTCTTCAGCTTATATAGCGACGATTGATCAGATAGTAGATAAGATAAGATGATTAGGCCACCGATGTGGTTGACACGTTGAATAATACCGAATGTATATTTACTTAAAGTTGAGGAAGAAATGGCAGGACCATTCCTTCCGCAACACACTGAATTTACAGAAATAAGTTTCGTTTACTACTGTAGTGATTTTGAGACAAGGCCTCGAAAATGGACCGGGAAGCCTCCCGCGAAATTTTCCAGGTCCCACTTTTTTTAATTCGACAATATACTCACATGGCGGCCCGAATCTCATGATCTTTTTCCTCTAGATAAATTTWAAAGGAACTGTAGATTGCGATAATTCTGAAACTCATTCTTCTCAGCCTCTCCCTAAATGTGTGAAACATCTCGGAGTTTAGATTCTTGATCAACACCTTGCGAACTTCGTACTAAAAAAGTTATTGACGCCCTCATATCTGTAAATGTCCAACTCTAACTCATCAGTAAAACCTGTAAATTCAAGCATGACAAAATAGAATTTAAAATACACCGAAGAAATCCACTAATTCTTGTTTCTCTTTCTCGTTCCATTTCACCATTGTTTTTCTCCAATCATCGCCTTTTTTCGAATGAGTTTTATAAAGCAAAAAATTCTGGAAAAGTATAAATACTGAAACAATTTGCTCTTTTCTCATTTTCAGACTCAAAGATCACTGGAATATTTGTGTAATCTATCGAACCCGGATTCCCTCCCTCAACTTCGTAACTCTTTTTTCTTTTTTTGTCTGATAAGAAATACACAAATTAACACAAATTAACAGTATGATGCATGGAGGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 297 204</canonical_bands>
                <polymorphic_bands>703 297</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>265 253 204 151 62 32 23 10</canonical_bands>
                <polymorphic_bands>266 265 253 151 32 23 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTACTTAAAGTTGAGGAAGAAATG</pcr_primer_p1>
		<pcr_primer_p2>ATTTAGGGAGAGGCTGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>279</pcr_amplicon_size>
		<canonical_amplicon>TTTACTTAAAGTTGAGGAAGAAATGGCAGGACCATTCCTTCCGCAACACACTGAATTTACAGAAATAAGTTTCGTTTACTACTGTAGTGATTTTGAGACAAGGCCTCGAAAATGGACCGGGAAGCCTCCCGCGAAATTTTCCAGGTCCCACTTTTTTTAATTCGACAATATACTCACATGGCGGCCCGAATCTCATGATCTTTTTCCTCTAGATAAATTTAAAAGGAACTGTAGATTGCGATAATTCTGAAACTCATTCTTCTCAGCCTCTCCCTAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTACTTAAAGTTGAGGAAGAAATGGCAGGACCATTCCTTCCGCAACACACTGAATTTACAGAAATAAGTTTCGTTTACTACTGTAGTGATTTTGAGACAAGGCCTCGAAAATGGACCGGGAAGCCTCCCGCGAAATTTTCCAGGTCCCACTTTTTTTAATTCGACAATATACTCACATGGCGGCCCGAATCTCATGATCTTTTTCCTCTAGATAAATTTWAAAGGAACTGTAGATTGCGATAATTCTGAAACTCATTCTTCTCAGCCTCTCCCTAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34592</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>39088</contig_pos>
        <strand>+</strand>
        <context>ATCCATCCAC[A/C]CCCCAGGATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGTCCCTTTGATGATGTGTTCATCATCGATTATACTAAGCATCCATCCAC</left_flank>
        <right_flank>CCCCAGGATAGTACTTTTCGACCGCAACTACGGCTGAAAGGACACGAGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCCGGCTCCTGCGAAGAATTAACCCGGGAACAGCGAGTATGGAAGAAAAATGTTCCGTATCTATATGACACAATGGTCACAAAAGAACTCGAATGGCCATCGTTAACCATTCAGTGGATGCCTGACGTGACTAAAGTGAGGAATGACAGATTTTTAAGAATCGCCTTATTCTTTCCAGACAGAAAACTCTGATTCATCGGTACATCGATTAATTCATGGAACACACACTTCGGGTGATGTTCAAAATCATTTGATTATCTCAAAGTTTTCTATCAATACGGATGGACCCGAATTCGATGACTCGAAATGGGATCCTGAACGGGAAGAGTATGGCGGATACGGAGCGGGAAGTGCTGCAAAGCTGGAAGGTGAGATTCGTATCAATCACCCAGGAGAAGTGCATCGGGCGCGGTACATGCCTCAGAATCCATATGTAGTTGCTACCAGAGGTCCCTTTGATGATGTGTTCATCATCGATTATACTAAGCATCCATCCACACCCCAGGATAGTACTTTTCGACCGCAACTACGGCTGAAAGGACACGAGGGAGAAGGGTATGGTATGTCGTGGAGCAATACAAGAGAAGGACACTTGCTCACCGCAGGTGACGATGGAGCTGTGAGTGGCTTTAGACGTTACCTGATTGAAATAAAGAATCTGTTTAGGTTTGTCATTGGGACATAAATGCAAATCAAAAGATTAGTGGACAATTGAATCAACAGAGTAAATATAAAGGACATTCATCGAACGTTGAAGATGTATCCTTTCACCAGCTTCATGATTTCGTTTTCGCATCAGTCGGAGATGATAGAAAATTGAATCTCTGGGATCTTCGTCACCCAAAACCTCAACTTTCTTCGATCGGACATAACGCCGAAGTCAATTGCGTCGCTTTCAATCCTTTTTCTGAGTTCATTCTTGCCACCGGTTCGGCCGATAAGACAGTAGCTTTGTGGGATATGAGAAATCTTGGAAAGAAGGTTTACACTCTTCAACAT</canonical>
            <polymorphic>GGCCGGCTCCTGCGAAGAATTAACCCGGGAACAGCGAGTATGGAAGAAAAATGTTCCGTATCTATATGACACAATGGTCACAAAAGAACTCGAATGGCCATCGTTAACCATTCAGTGGATGCCTGACGTGACTAAAGTGAGGAATGACAGATTTTTAAGAATCGCCTTATTCTTTCCAGACAGAAAACTCTGATTCATCGGTACATCGATTAATTCATGGAACACACACTTCGGGTGATGTTCAAAATCATTTGATTATCTCAAAGTTTTCTATCAATACGGATGGACCCGAATTCGATGACTCGAAATGGGATCCTGAACGGGAAGAGTATGGCGGATACGGAGCGGGAAGTGCTGCAAAGCTGGAAGGTGAGATTCGTATCAATCACCCAGGAGAAGTGCATCGGGCGCGGTACATGCCTCAGAATCCATATGTAGTTGCTACCAGAGGTCCCTTTGATGATGTGTTCATCATCGATTATACTAAGCATCCATCCACMCCCCAGGATAGTACTTTTCGACCGCAACTACGGCTGAAAGGACACGAGGGAGAAGGGTATGGTATGTCGTGGAGCAATACAAGAGAAGGACACTTGCTCACCGCAGGTGACGATGGAGCTGTGAGTGGCTTTAGACGTTACCTGATTGAAATAAAGAATCTGTTTAGGTTTGTCATTGGGACATAAATGCAAATCAAAAGATTAGTGGACAATTGAATCAACAGAGTAAATATAAAGGACATTCATCGAACGTTGAAGATGTATCCTTTCACCAGCTTCATGATTTCGTTTTCGCATCAGTCGGAGATGATAGAAAATTGAATCTCTGGGATCTTCGTCACCCAAAACCTCAACTTTCTTCGATCGGACATAACGCCGAAGTCAATTGCGTCGCTTTCAATCCTTTTTCTGAGTTCATTCTTGCCACCGGTTCGGCCGATAAGACAGTAGCTTTGTGGGATATGAGAAATCTTGGAAAGAAGGTTTACACTCTTCAACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>117 86 85 80 71 69 66 64 44 37 32 31 31 27 21 18 16 14 13 13 11 9 9 9 9 8 4 2 2 2</canonical_bands>
                <polymorphic_bands>117 86 85 80 71 69 66 64 46 37 32 31 31 27 21 18 16 14 13 13 11 9 9 9 9 8 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATATGTAGTTGCTACCAGAGGT</pcr_primer_p1>
		<pcr_primer_p2>CAATGACAAACCTAAACAGATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATATGTAGTTGCTACCAGAGGTCCCTTTGATGATGTGTTCATCATCGATTATACTAAGCATCCATCCACACCCCAGGATAGTACTTTTCGACCGCAACTACGGCTGAAAGGACACGAGGGAGAAGGGTATGGTATGTCGTGGAGCAATACAAGAGAAGGACACTTGCTCACCGCAGGTGACGATGGAGCTGTGAGTGGCTTTAGACGTTACCTGATTGAAATAAAGAATCTGTTTAGGTTTGTCATTG</canonical_amplicon>
		<polymorphic_amplicon>CATATGTAGTTGCTACCAGAGGTCCCTTTGATGATGTGTTCATCATCGATTATACTAAGCATCCATCCACMCCCCAGGATAGTACTTTTCGACCGCAACTACGGCTGAAAGGACACGAGGGAGAAGGGTATGGTATGTCGTGGAGCAATACAAGAGAAGGACACTTGCTCACCGCAGGTGACGATGGAGCTGTGAGTGGCTTTAGACGTTACCTGATTGAAATAAAGAATCTGTTTAGGTTTGTCATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34593</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>157743</contig_pos>
        <strand></strand>
        <context>tcaatcgata[C/T]attttttgtc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACAACTAATAATTTTTATCATAACATCACAAACATTTTGTCAATCGATA</left_flank>
        <right_flank>ATTTTTTGTCATAGGAATTTATGGGTTTCTGTTAGAGACAATACGGTATT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAACTCGTTTTCCGAGTATTTCGGACGCAAGGGAAACTAGAAGAGTACTGATTCTTTTTCTGTGACTTTTATGTGTTTTTCCGGTCCGGTGGAAAAATATCGAAGAAAAAGAAAAAAGGAAAACGGAGAGTCTCAAAGGTGCCCAATCCGATATCATTTTTCTACTTATTATTGGACATTCTCTTTTCGTTTTCCTCTTGGTTCCAGTCGAGGAAAAACAGCCGTTCATCTTTTTCTCCGTTTTATTCTTATCTTTTTCGTTTTTGGCCCATTTTTCTTCCTTTCCTACTTCAAAAAATAAACATACATAAATTTCGAAAAACTTTCAAAATAGTTCCGTATTCCAACTAATAGATTAGCACACCGCGAAGCCTGTAATAGAAGGGCCCCTAACTTCTAACTTCAAATCCAAAGTTTTTCGGTACCTGTCAAGGATTTTAAAAAAGTGGACAACTAATAATTTTTATCATAACATCACAAACATTTTGTCAATCGATACATTTTTTGTCATAGGAATTTATGGGTTTCTGTTAGAGACAATACGGTATTTTCAAACAGATACGATGTCTTCGACCTCTCTGGATACTTTGTTCTCTTTTTGTTTTAACCTAAAATTTTAACCTAAAAATTGCGTTTCTACTTTGTTACTTTCCGTTTCAATGAGCTCAAAAAAAGGGGGATATTCTAGACAAAAGGAGATACATTCTATTGTTTGTTTGTGAATTAGTGATAAAGAAACAGGGCACTTCTCTTCAAGGATCATCAGAAATTTTCATCTCATTGAGCACATTCTGCTTACTATTAGTCTTCTTCTACTTTTCCAAAGTTCACTAGAGAGCTTGAAACTTTGAAAAAAATGTGGGCTAAAACTTCAAAGCATTTAGCCATTCTATTTTCAGCTAATGTTAAACAAGGAACTTCTTTATTTTCCTTATCTCATAGTCAGCTCTTTTTTTGTTTTTTGCTCTTTAAACTTCCAGTTTTCATGCTTCTCTTTCT</canonical>
            <polymorphic>ACAACTCGTTTTCCGAGTATTTCGGACGCAAGGGAAACTAGAAGAGTACTGATTCTTTTTCTGTGACTTTTATGTGTTTTTCCGGTCCGGTGGAAAAATATCGAAGAAAAAGAAAAAAGGAAAACGGAGAGTCTCAAAGGTGCCCAATCCGATATCATTTTTCTACTTATTATTGGACATTCTCTTTTCGTTTTCCTCTTGGTTCCAGTCGAGGAAAAACAGCCGTTCATCTTTTTCTCCGTTTTATTCTTATCTTTTTCGTTTTTGGCCCATTTTTCTTCCTTTCCTACTTCAAAAAATAAACATACATAAATTTCGAAAAACTTTCAAAATAGTTCCGTATTCCAACTAATAGATTAGCACACCGCGAAGCCTGTAATAGAAGGGCCCCTAACTTCTAACTTCAAATCCAAAGTTTTTCGGTACCTGTCAAGGATTTTAAAAAAGTGGACAACTAATAATTTTTATCATAACATCACAAACATTTTGTCAATCGATAYATTTTTTGTCATAGGAATTTATGGGTTTCTGTTAGAGACAATACGGTATTTTCAAACAGATACGATGTCTTCGACCTCTCTGGATACTTTGTTCTCTTTTTGTTTTAACCTAAAATTTTAACCTAAAAATTGCGTTTCTACTTTGTTACTTTCCGTTTCAATGAGCTCAAAAAAAGGGGGATATTCTAGACAAAAGGAGATACATTCTATTGTTTGTTTGTGAATTAGTGATAAAGAAACAGGGCACTTCTCTTCAAGGATCATCAGAAATTTTCATCTCATTGAGCACATTCTGCTTACTATTAGTCTTCTTCTACTTTTCCAAAGTTCACTAGAGAGCTTGAAACTTTGAAAAAAATGTGGGCTAAAACTTCAAAGCATTTAGCCATTCTATTTTCAGCTAATGTTAAACAAGGAACTTCTTTATTTTCCTTATCTCATAGTCAGCTCTTTTTTTGTTTTTTGCTCTTTAAACTTCCAGTTTTCATGCTTCTCTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTTTCAAAATAGTTCCGTATTC</pcr_primer_p1>
		<pcr_primer_p2>CATCGTATCTGTTTGAAAATACC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AACTTTCAAAATAGTTCCGTATTCCAACTAATAGATTAGCACACCGCGAAGCCTGTAATAGAAGGGCCCCTAACTTCTAACTTCAAATCCAAAGTTTTTCGGTACCTGTCAAGGATTTTAAAAAAGTGGACAACTAATAATTTTTATCATAACATCACAAACATTTTGTCAATCGATACATTTTTTGTCATAGGAATTTATGGGTTTCTGTTAGAGACAATACGGTATTTTCAAACAGATACGATG</canonical_amplicon>
		<polymorphic_amplicon>AACTTTCAAAATAGTTCCGTATTCCAACTAATAGATTAGCACACCGCGAAGCCTGTAATAGAAGGGCCCCTAACTTCTAACTTCAAATCCAAAGTTTTTCGGTACCTGTCAAGGATTTTAAAAAAGTGGACAACTAATAATTTTTATCATAACATCACAAACATTTTGTCAATCGATAYATTTTTTGTCATAGGAATTTATGGGTTTCTGTTAGAGACAATACGGTATTTTCAAACAGATACGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34594</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>159970</contig_pos>
        <strand></strand>
        <context>aatatctttc[A/G]aaggatccga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCATTTTACGAAAAACATTTCATCAGTTGACAAATTTTTAATATCTTTC</left_flank>
        <right_flank>AAGGATCCGAGATAATTGAGTTAAAAGTTGACTGTTTCGGTGGGCTTCTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGGACACCACAACTTCCGTCTATTTTTTCTCGGCTGTGTCTCTTTTTTGACATAAATTCGAGTAAAGTTTCAGACATGTTTGGAAGACGTCATCTGGGAATCTGAGTCGAGTCAAACTGGCTGCGAAAACTGTTGTACCGCCTTTTAGAATGTCGCTTTTCATGTTCTTCGGACTCGGACGGGTAAGTCATTTTTTGAGTTTATTATAGTCTCAATGAAAGTGGACCTGTCATAAGAGATGTCAAATTTTGGAAATCCAAGTCCTATTTTTTTACAATAGATGCTTTTTGCTGATTTTCCACAATTCTAATGAGACTGGTCCGAAACCAGCAGTATTGTTGTTATTGGAAATGCAATTACCGCATGAAATTACCGTAGTCCACTTTGATCTCATTTATCTCGGTTCCTTCAAAAGATATCAAAAAAGTTGTCAACTGATAAAATTGTGGTCATTTTACGAAAAACATTTCATCAGTTGACAAATTTTTAATATCTTTCAAAGGATCCGAGATAATTGAGTTAAAAGTTGACTGTTTCGGTGGGCTTCTCTTAAGAGGAAATACGGTGATTACTTTGAAAGAAATAATGAACTTTTAACAAGCCCTTTTTTTTAACAAGCCCAGAATTTTTTTAACAAGCCCAGAATAGCAAATTCGTTTTGATTGTTTTGATCTGATCACAGATTTTGGACCTTTCTTCCGCTCTATTTTTTAAGAACTATCAAAAAATTCCTAGGAACTATTTGGTGTGGCTTTCAATTCCCTTCTGTGACCATAAATTCTTTTCGGCCAGAAAAGAATCTTCCATCTTTGATGTATTCGAAAGTTTTGACTTCGCTCTTCCCATTTTTGTCCCGTTGTCGCTGAGGCCAAACTGAGCGCAATGAGATATCCGACGAGAACTCGTGATATGAACTTTTAGCTACAGTATTCACCTACCCCATGACAAAAAGACTCTTCATCGCATCTAGGAAAAGAGTTAAAATTCATACTGTTGGAC</canonical>
            <polymorphic>CCGGACACCACAACTTCCGTCTATTTTTTCTCGGCTGTGTCTCTTTTTTGACATAAATTCGAGTAAAGTTTCAGACATGTTTGGAAGACGTCATCTGGGAATCTGAGTCGAGTCAAACTGGCTGCGAAAACTGTTGTACCGCCTTTTAGAATGTCGCTTTTCATGTTCTTCGGACTCGGACGGGTAAGTCATTTTTTGAGTTTATTATAGTCTCAATGAAAGTGGACCTGTCATAAGAGATGTCAAATTTTGGAAATCCAAGTCCTATTTTTTTACAATAGATGCTTTTTGCTGATTTTCCACAATTCTAATGAGACTGGTCCGAAACCAGCAGTATTGTTGTTATTGGAAATGCAATTACCGCATGAAATTACCGTAGTCCACTTTGATCTCATTTATCTCGGTTCCTTCAAAAGATATCAAAAAAGTTGTCAACTGATAAAATTGTGGTCATTTTACGAAAAACATTTCATCAGTTGACAAATTTTTAATATCTTTCRAAGGATCCGAGATAATTGAGTTAAAAGTTGACTGTTTCGGTGGGCTTCTCTTAAGAGGAAATACGGTGATTACTTTGAAAGAAATAATGAACTTTTAACAAGCCCTTTTTTTTAACAAGCCCAGAATTTTTTTAACAAGCCCAGAATAGCAAATTCGTTTTGATTGTTTTGATCTGATCACAGATTTTGGACCTTTCTTCCGCTCTATTTTTTAAGAACTATCAAAAAATTCCTAGGAACTATTTGGTGTGGCTTTCAATTCCCTTCTGTGACCATAAATTCTTTTCGGCCAGAAAAGAATCTTCCATCTTTGATGTATTCGAAAGTTTTGACTTCGCTCTTCCCATTTTTGTCCCGTTGTCGCTGAGGCCAAACTGAGCGCAATGAGATATCCGACGAGAACTCGTGATATGAACTTTTAGCTACAGTATTCACCTACCCCATGACAAAAAGACTCTTCATCGCATCTAGGAAAAGAGTTAAAATTCATACTGTTGGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCAGCAGTATTGTTGTTATTG</pcr_primer_p1>
		<pcr_primer_p2>CTTTCAAAGTAATCACCGTATTT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AACCAGCAGTATTGTTGTTATTGGAAATGCAATTACCGCATGAAATTACCGTAGTCCACTTTGATCTCATTTATCTCGGTTCCTTCAAAAGATATCAAAAAAGTTGTCAACTGATAAAATTGTGGTCATTTTACGAAAAACATTTCATCAGTTGACAAATTTTTAATATCTTTCAAAGGATCCGAGATAATTGAGTTAAAAGTTGACTGTTTCGGTGGGCTTCTCTTAAGAGGAAATACGGTGATTACTTTGAAAG</canonical_amplicon>
		<polymorphic_amplicon>AACCAGCAGTATTGTTGTTATTGGAAATGCAATTACCGCATGAAATTACCGTAGTCCACTTTGATCTCATTTATCTCGGTTCCTTCAAAAGATATCAAAAAAGTTGTCAACTGATAAAATTGTGGTCATTTTACGAAAAACATTTCATCAGTTGACAAATTTTTAATATCTTTCRAAGGATCCGAGATAATTGAGTTAAAAGTTGACTGTTTCGGTGGGCTTCTCTTAAGAGGAAATACGGTGATTACTTTGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34595</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>276339</contig_pos>
        <strand></strand>
        <context>TTTCAGAAAT[A/C]CAGAAAACCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCGCAGCTCGAATTTCTTGATTCATCCGGTAATCCGCTTTTCAGAAAT</left_flank>
        <right_flank>CAGAAAACCAGAAATTCGAAAATCCGGTAAACCGGTAATCCGAAAATCCG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCACTCTGGAAATGAGAGATTTTGAAGGTTTTGAAGCTCTGAATGCGACGAATTTCAAGATTCTGGCCCTTATACGCAAAGACTTTTACTTTTATGAAATCCAAATTCCTGATTCCGGATTTCCGGATTACCGGTGTACCAGGTTTTCGAATTTCTGGTTTTCTGGATTTCTGAATTTCCGGATTACCGGATTACTTGATGAATCCAGAAATTCGAAATTCGAAAGTTCAAGAATCTGGAATTCCGGAAACCTGGAAATAAAAAATCCTGAAATTTCAGGATTTTTGATTTTCGGGTTCCCGGATTTCCGGATTTCCAAATTTTTGAATTTTCGACTTTTTTGTTATCCTGGATTGTCGGATTTATGGGTTTCTGGATTTCAGAATTTCAGGATTCTTGATTTCCAGGTTTCCGGAATTCCGGATTTTCAAATTTCAAATTTCTGGGTTTTCGCAGCTCGAATTTCTTGATTCATCCGGTAATCCGCTTTTCAGAAATACAGAAAACCAGAAATTCGAAAATCCGGTAAACCGGTAATCCGAAAATCCGGAATCCGGAATTTGGATTCTATGTGAAAAAGGCTTTGCGTATAAGGGTCATAACCTTGAAATTCATCGAATTCAGAGCTTCATTATTTATTTTTCATGTTAACACTTTTTCACGAATGTTGACCTAAATATGTGTATTATGCGAGACAAGTTGCGAGACTTGCACGTGAAATGAGAAATTGCGAGCTTTTGCGAGAACGAGAAATTGCAAGACGAGACAATGCGAGCATTTGCGAACGCAAGGCAAGGCAAGCATTTATGCAAGACAAGCCAAGACGAGTCCCGAAAATTTCTTGCAAGACTTGCAAGAGTTCTCGTTCTTGCCGAACTCATTGCTCGCGAGACGGAACTCTAGTTTCCAGGTACAAAATGAGAGGTGGAGTAGAAGCCACGTCAACAGCATGTGCGACCGGTCTACACTGCATCGGAAACGCTTTCCAATCGATCCGTT</canonical>
            <polymorphic>TCCACTCTGGAAATGAGAGATTTTGAAGGTTTTGAAGCTCTGAATGCGACGAATTTCAAGATTCTGGCCCTTATACGCAAAGACTTTTACTTTTATGAAATCCAAATTCCTGATTCCGGATTTCCGGATTACCGGTGTACCAGGTTTTCGAATTTCTGGTTTTCTGGATTTCTGAATTTCCGGATTACCGGATTACTTGATGAATCCAGAAATTCGAAATTCGAAAGTTCAAGAATCTGGAATTCCGGAAACCTGGAAATAAAAAATCCTGAAATTTCAGGATTTTTGATTTTCGGGTTCCCGGATTTCCGGATTTCCAAATTTTTGAATTTTCGACTTTTTTGTTATCCTGGATTGTCGGATTTATGGGTTTCTGGATTTCAGAATTTCAGGATTCTTGATTTCCAGGTTTCCGGAATTCCGGATTTTCAAATTTCAAATTTCTGGGTTTTCGCAGCTCGAATTTCTTGATTCATCCGGTAATCCGCTTTTCAGAAATMCAGAAAACCAGAAATTCGAAAATCCGGTAAACCGGTAATCCGAAAATCCGGAATCCGGAATTTGGATTCTATGTGAAAAAGGCTTTGCGTATAAGGGTCATAACCTTGAAATTCATCGAATTCAGAGCTTCATTATTTATTTTTCATGTTAACACTTTTTCACGAATGTTGACCTAAATATGTGTATTATGCGAGACAAGTTGCGAGACTTGCACGTGAAATGAGAAATTGCGAGCTTTTGCGAGAACGAGAAATTGCAAGACGAGACAATGCGAGCATTTGCGAACGCAAGGCAAGGCAAGCATTTATGCAAGACAAGCCAAGACGAGTCCCGAAAATTTCTTGCAAGACTTGCAAGAGTTCTCGTTCTTGCCGAACTCATTGCTCGCGAGACGGAACTCTAGTTTCCAGGTACAAAATGAGAGGTGGAGTAGAAGCCACGTCAACAGCATGTGCGACCGGTCTACACTGCATCGGAAACGCTTTCCAATCGATCCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTCAGAATTTCAGGATTCTT</pcr_primer_p1>
		<pcr_primer_p2>AATTCGATGAATTTCAAGGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GATTTCAGAATTTCAGGATTCTTGATTTCCAGGTTTCCGGAATTCCGGATTTTCAAATTTCAAATTTCTGGGTTTTCGCAGCTCGAATTTCTTGATTCATCCGGTAATCCGCTTTTCAGAAATACAGAAAACCAGAAATTCGAAAATCCGGTAAACCGGTAATCCGAAAATCCGGAATCCGGAATTTGGATTCTATGTGAAAAAGGCTTTGCGTATAAGGGTCATAACCTTGAAATTCATCGAATT</canonical_amplicon>
		<polymorphic_amplicon>GATTTCAGAATTTCAGGATTCTTGATTTCCAGGTTTCCGGAATTCCGGATTTTCAAATTTCAAATTTCTGGGTTTTCGCAGCTCGAATTTCTTGATTCATCCGGTAATCCGCTTTTCAGAAATMCAGAAAACCAGAAATTCGAAAATCCGGTAAACCGGTAATCCGAAAATCCGGAATCCGGAATTTGGATTCTATGTGAAAAAGGCTTTGCGTATAAGGGTCATAACCTTGAAATTCATCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34596</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>290916</contig_pos>
        <strand>+</strand>
        <context>GAAAACTGAT[A/G]CAACGGTACT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGCCACTTTCTCAATCGAATAACCGAAAAAAAAGAGACGGAAAACTGAT</left_flank>
        <right_flank>CAACGGTACTCTAAAAAAGGAGATCGACAAAAAAAAAATAAATTCGTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAATCAATATTTTATCAGTTAACAGACTTTTCATATGAGCTCAACTTTTTTTATTAGAGCCAGCTTTTATTAGAGCAAGTACGATATGTGGTATTGAATAAACCCGACAATTTCAAAACCAAATGATTTACTATAAAACCTGTAATAGAAGGTCCCCCACACTAACAAGTTTGAGCCAGTTTATCTTGGCTCTTGTGCAAGGTTTGACAGGAGCATAGATATATTGGCTCATAGTTTAAGATTTCCTTCTATTACAGTGTCTACGGTATCTTCTTTTTGAAGTTACCGTATCAAGATATCGTAATCGTAGTTACAAGATAAATGTGAAACTAAAATTCAGAATAAAACATTGATTCGACGAACTTCGTCTAACAAGAGAATTCAAGAATGTTCTTGGGTTCAAATTAAAAATGGACTGTCCACCGAACCACTTCTTCTTCTAATCAAATGGCCACTTTCTCAATCGAATAACCGAAAAAAAAGAGACGGAAAACTGATGCAACGGTACTCTAAAAAAGGAGATCGACAAAAAAAAAATAAATTCGTTTAGAAGAAATAAATGATAAGAAAACGGTTGAAAAATAGGAAAATCGGAAACCGGAGAGGAAGAAAAAAACTAACAAAAAACTAATCAGTTTTTTTAGAAAAAAAAACCGTTTTCTTTTGTTTTTTTTTTCAAACAATAGAAAGAAAACAGGGCTTGGCTTTTTTATTGCCGATTCATAAAAACTGTGTTTCTCTGTTTTCTTATAAGGAACAGAGAAAACGACGGGGGATGGAAGGAGTTAAAGAAGAAGAAGGACCGCCGAAACAATTTGAGAGATAAGAGTGATAAGAGGAGATAGAGAGACGTAGAGTTTTTTGAAAGACGTTCTCGGTAAAAGCAGGAGGACGAAAAGGAATATGAAGAAGAGAAGAAGAAGAAACAACGGAAAGGAGGAAATGAGAGAAAATGTACTTGAGGACCAATTGGTGATTGGAAATAAAAGTGTCATGTGA</canonical>
            <polymorphic>ATAATCAATATTTTATCAGTTAACAGACTTTTCATATGAGCTCAACTTTTTTTATTAGAGCCAGCTTTTATTAGAGCAAGTACGATATGTGGTATTGAATAAACCCGACAATTTCAAAACCAAATGATTTACTATAAAACCTGTAATAGAAGGTCCCCCACACTAACAAGTTTGAGCCAGTTTATCTTGGCTCTTGTGCAAGGTTTGACAGGAGCATAGATATATTGGCTCATAGTTTAAGATTTCCTTCTATTACAGTGTCTACGGTATCTTCTTTTTGAAGTTACCGTATCAAGATATCGTAATCGTAGTTACAAGATAAATGTGAAACTAAAATTCAGAATAAAACATTGATTCGACGAACTTCGTCTAACAAGAGAATTCAAGAATGTTCTTGGGTTCAAATTAAAAATGGACTGTCCACCGAACCACTTCTTCTTCTAATCAAATGGCCACTTTCTCAATCGAATAACCGAAAAAAAAGAGACGGAAAACTGATRCAACGGTACTCTAAAAAAGGAGATCGACAAAAAAAAAATAAATTCGTTTAGAAGAAATAAATGATAAGAAAACGGTTGAAAAATAGGAAAATCGGAAACCGGAGAGGAAGAAAAAAACTAACAAAAAACTAATCAGTTTTTTTAGAAAAAAAAACCGTTTTCTTTTGTTTTTTTTTTCAAACAATAGAAAGAAAACAGGGCTTGGCTTTTTTATTGCCGATTCATAAAAACTGTGTTTCTCTGTTTTCTTATAAGGAACAGAGAAAACGACGGGGGATGGAAGGAGTTAAAGAAGAAGAAGGACCGCCGAAACAATTTGAGAGATAAGAGTGATAAGAGGAGATAGAGAGACGTAGAGTTTTTTGAAAGACGTTCTCGGTAAAAGCAGGAGGACGAAAAGGAATATGAAGAAGAGAAGAAGAAGAAACAACGGAAAGGAGGAAATGAGAGAAAATGTACTTGAGGACCAATTGGTGATTGGAAATAAAAGTGTCATGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 302 198</canonical_bands>
                <polymorphic_bands>802 198</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCGTCTAACAAGAGAATTCAA</pcr_primer_p1>
		<pcr_primer_p2>GTTTCCGATTTTCCTATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>CTTCGTCTAACAAGAGAATTCAAGAATGTTCTTGGGTTCAAATTAAAAATGGACTGTCCACCGAACCACTTCTTCTTCTAATCAAATGGCCACTTTCTCAATCGAATAACCGAAAAAAAAGAGACGGAAAACTGATGCAACGGTACTCTAAAAAAGGAGATCGACAAAAAAAAAATAAATTCGTTTAGAAGAAATAAATGATAAGAAAACGGTTGAAAAATAGGAAAATCGGAAAC</canonical_amplicon>
		<polymorphic_amplicon>CTTCGTCTAACAAGAGAATTCAAGAATGTTCTTGGGTTCAAATTAAAAATGGACTGTCCACCGAACCACTTCTTCTTCTAATCAAATGGCCACTTTCTCAATCGAATAACCGAAAAAAAAGAGACGGAAAACTGATRCAACGGTACTCTAAAAAAGGAGATCGACAAAAAAAAAATAAATTCGTTTAGAAGAAATAAATGATAAGAAAACGGTTGAAAAATAGGAAAATCGGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34597</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>333297</contig_pos>
        <strand>+</strand>
        <context>GAAATAGTAY[C/T]GAACAGTATA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCAAAATAAAACTCAAAAAAGTTAGTTAATTATTCAGTGAAATAGTAC</left_flank>
        <right_flank>GAACAGTATAAAAAGTTCAGATAACGAATTGGAGCGGTTGCAGTGGAGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCATTAACTACCATGTTTTACTACATTCAGTGTTGTTTTTGTTACCGATTTGTTGTTATCCAGTTTTTATTTCCCTTTCATATTTACCACGTTCCTCTTTTTTTTCTAATTTGTTCAGTATTTCAATTTTCATATAAACGCACTTTCAAATTTAACGACTATGCTGGTACATACTTTTTCAGTCATCAGAGAAACTTTTTTCAATTCAGAGTGTTAGCAGAGGACCCAGAAGACACGAATATCGATCAGAAGTTGAAACTATTTCCAGAGGACCCGATTTGCTCCTCAAGGCGACCGACGAAGTTTTCAGCAAAAAAAACAATGATACGACTTTGAAAAATCAATTTCAGACATCAAGCGACGGAGGGTCAACTTCTATAACAAAATCTGTTGAAGATACTGGTTCGAAAGATAAAAGTAGTCAATCTCTAGTTAGAACCCATCATGTTCTCAAAATAAAACTCAAAAAAGTTAGTTAATTATTCAGTGAAATAGTACTGAACAGTATAAAAAGTTCAGATAACGAATTGGAGCGGTTGCAGTGGAGCAGCCTTGGATGATGAGCCATTCTATCACGGTTACATGTCTCGTGAAGAAGCAGAAAAATTGGTTCGTACACAGGGAGAATTTCTTCTTCGTAAGACAGAATCAACGAAGAGAGGAGAAGTCGTTGTACTCTCCGTATTCTGGGATGACACTGCCAATCATCTAGTCGTTGAAAAAGCCAACAATGGCTCCTCGTATTATCTGAAAGAGTTCTGCTTTGAGAATATCAGTGACCTAGTCCGTTATCATCATCAGACACGCGCCTCCGTCTATAAATCGGGAATCAAATTGTTCAGTTGGGTGATTAGAGAGGAATGGCAATTGTATCATGAACAGGTTACTGTAGTTTTGTTTTGAAAAATATATTACTTTAAAGTGCAGATAAATTTGGGAAAGAAATTGGGTAACGGAGAATTCGGAGAAGTTTTTCAAGGCATGTTGTCAGTGGGGATA</canonical>
            <polymorphic>TTCATTAACTACCATGTTTTACTACATTCAGTGTTGTTTTTGTTACCGATTTGTTGTTATCCAGTTTTTATTTCCCTTTCATATTTACCACGTTCCTCTTTTTTTTCTAATTTGTTCAGTATTTCAATTTTCATATAAACGCACTTTCAAATTTAACGACTATGCTGGTACATACTTTTTCAGTCATCAGAGAAACTTTTTTCAATTCAGAGTGTTAGCAGAGGACCCAGAAGACACGAATATCGATCAGAAGTTGAAACTATTTCCAGAGGACCCGATTTGCTCCTCAAGGCGACCGACGAAGTTTTCAGCAAAAAAAACAATGATACGACTTTGAAAAATCAATTTCAGACATCAAGCGACGGAGGGTCAACTTCTATAACAAAATCTGTTGAAGATACTGGTTCGAAAGATAAAAGTAGTCAATCTCTAGTTAGAACCCATCATGTTCTCAAAATAAAACTCAAAAAAGTTAGTTAATTATTCAGTGAAATAGTACYGAACAGTATAAAAAGTTCAGATAACGAATTGGAGCGGTTGCAGTGGAGCAGCCTTGGATGATGAGCCATTCTATCACGGTTACATGTCTCGTGAAGAAGCAGAAAAATTGGTTCGTACACAGGGAGAATTTCTTCTTCGTAAGACAGAATCAACGAAGAGAGGAGAAGTCGTTGTACTCTCCGTATTCTGGGATGACACTGCCAATCATCTAGTCGTTGAAAAAGCCAACAATGGCTCCTCGTATTATCTGAAAGAGTTCTGCTTTGAGAATATCAGTGACCTAGTCCGTTATCATCATCAGACACGCGCCTCCGTCTATAAATCGGGAATCAAATTGTTCAGTTGGGTGATTAGAGAGGAATGGCAATTGTATCATGAACAGGTTACTGTAGTTTTGTTTTGAAAAATATATTACTTTAAAGTGCAGATAAATTTGGGAAAGAAATTGGGTAACGGAGAATTCGGAGAAGTTTTTCAAGGCATGTTGTCAGTGGGGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGTACT</site>
                <isoschizomers>
                    <enzyme>Acc113I</enzyme>
                    <enzyme>ScaI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>495 327 178</canonical_bands>
                <polymorphic_bands>673 327</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTAGTTAGAACCCATCATGTTC</pcr_primer_p1>
		<pcr_primer_p2>AGTACAACGACTTCTCCTCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTAGTTAGAACCCATCATGTTCTCAAAATAAAACTCAAAAAAGTTAGTTAATTATTCAGTGAAATAGTACTGAACAGTATAAAAAGTTCAGATAACGAATTGGAGCGGTTGCAGTGGAGCAGCCTTGGATGATGAGCCATTCTATCACGGTTACATGTCTCGTGAAGAAGCAGAAAAATTGGTTCGTACACAGGGAGAATTTCTTCTTCGTAAGACAGAATCAACGAAGAGAGGAGAAGTCGTTGTACT</canonical_amplicon>
		<polymorphic_amplicon>TCTAGTTAGAACCCATCATGTTCTCAAAATAAAACTCAAAAAAGTTAGTTAATTATTCAGTGAAATAGTACYGAACAGTATAAAAAGTTCAGATAACGAATTGGAGCGGTTGCAGTGGAGCAGCCTTGGATGATGAGCCATTCTATCACGGTTACATGTCTCGTGAAGAAGCAGAAAAATTGGTTCGTACACAGGGAGAATTTCTTCTTCGTAAGACAGAATCAACGAAGAGAGGAGAAGTCGTTGTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34598</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>338910</contig_pos>
        <strand>+</strand>
        <context>AGAAACGGRG[A/G]CGTCTTCTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAGATCTCTTTCTTTCTTTCGTTTCGAATGGAAAGCCAAAGAAACGGGG</left_flank>
        <right_flank>CGTCTTCTGGAGGGCACGTCCCCAGAGGCAGTTTCTTGATGGATGACTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAGCGGAAATATTGGTATATATGTGTTAAAAGAGAAGAAATCGAAGGGGATTTCGGGAATTCAATTTGTTTCTTTTCCTCTTTTGTTGATTTGAAACCAACCAAAATCGGGATGTCTCTCCTTCTTTTGATATGATTATGATGATATCGGATAGAAAGAGAATGGATCATTACAGAAAAAGAGAAACTAGAGAAGAAATAGGGGCGGAGCTTAGGAAGAAAGACAAAGAAGAAGAAGACGTCGACGTTGGTTCGGTTTCTCTTTTTCTCTCTTCTCCTGACCCCAACATCAAGAAGCGTGTGCTGTCCAAGAGAAAAACTGTGGGAGAGGAAGAAAAAGAATCAAAAAAAATGCCACCCAATTCGGCACTTTTTCTATTAGCAGTAATACTTTTTGTGTCTCCAATTGATTCCAGAGGATTCTTTGGTATTCCAGGTAAGTTTCTTTTCTAGATCTCTTTCTTTCTTTCGTTTCGAATGGAAAGCCAAAGAAACGGGGACGTCTTCTGGAGGGCACGTCCCCAGAGGCAGTTTCTTGATGGATGACTCTTTGATTTAGGTGCTTCAACTTGTCGTTCTGTTTATCTTTGCTTTGAGTTTTTGGAAGAAGAGTGGGCCTAGATCAAAACAAAAAAGTAAACAAAAAAGATGCTAAACTATGATAGCATGTCAAAAATTTCAAGAAAAGATACGTTGTATAATTTTTTAGCAAAATTTGAATTCCCAAAATTATAAGAACATACAGATTGTACAGGGTGGCTCACAATTACCTGGACTGATAAACACAGGTATATCTTTAGACATAAGTATCTTGGAGGCACGAAAATCGGTAGAAATATAATTTTACATTTGATTCAAAGCTAATAAAATTTTCACAGCGATTCCTCAATTCTAGATATCATTCTTAGATAAATAAATGAAGTTGCCTCTCTTTCTCGATCTGTCCGAACACGTTGAAAAAGTTGAAATAAAATATAAATTTACGTGACCCTTTGAGTAA</canonical>
            <polymorphic>CGAGCGGAAATATTGGTATATATGTGTTAAAAGAGAAGAAATCGAAGGGGATTTCGGGAATTCAATTTGTTTCTTTTCCTCTTTTGTTGATTTGAAACCAACCAAAATCGGGATGTCTCTCCTTCTTTTGATATGATTATGATGATATCGGATAGAAAGAGAATGGATCATTACAGAAAAAGAGAAACTAGAGAAGAAATAGGGGCGGAGCTTAGGAAGAAAGACAAAGAAGAAGAAGACGTCGACGTTGGTTCGGTTTCTCTTTTTCTCTCTTCTCCTGACCCCAACATCAAGAAGCGTGTGCTGTCCAAGAGAAAAACTGTGGGAGAGGAAGAAAAAGAATCAAAAAAAATGCCACCCAATTCGGCACTTTTTCTATTAGCAGTAATACTTTTTGTGTCTCCAATTGATTCCAGAGGATTCTTTGGTATTCCAGGTAAGTTTCTTTTCTAGATCTCTTTCTTTCTTTCGTTTCGAATGGAAAGCCAAAGAAACGGGGRCGTCTTCTGGAGGGCACGTCCCCAGAGGCAGTTTCTTGATGGATGACTCTTTGATTTAGGTGCTTCAACTTGTCGTTCTGTTTATCTTTGCTTTGAGTTTTTGGAAGAAGAGTGGGCCTAGATCAAAACAAAAAAGTAAACAAAAAAGATGCTAAACTATGATAGCATGTCAAAAATTTCAAGAAAAGATACGTTGTATAATTTTTTAGCAAAATTTGAATTCCCAAAATTATAAGAACATACAGATTGTACAGGGTGGCTCACAATTACCTGGACTGATAAACACAGGTATATCTTTAGACATAAGTATCTTGGAGGCACGAAAATCGGTAGAAATATAATTTTACATTTGATTCAAAGCTAATAAAATTTTCACAGCGATTCCTCAATTCTAGATATCATTCTTAGATAAATAAATGAAGTTGCCTCTCTTTCTCGATCTGTCCGAACACGTTGAAAAAGTTGAAATAAAATATAAATTTACGTGACCCTTTGAGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACGTC</site>
                <isoschizomers>
                    <enzyme>AatII</enzyme>
                    <enzyme>ZraI</enzyme>
                </isoschizomers>
                <canonical_bands>497 261 242</canonical_bands>
                <polymorphic_bands>758 242</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>500 261 239</canonical_bands>
                <polymorphic_bands>761 239</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>260 255 239 175 32 17 16 6</canonical_bands>
                <polymorphic_bands>271 260 239 175 32 17 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTTGGTATTCCAGGTAAGT</pcr_primer_p1>
		<pcr_primer_p2>CATGCTATCATAGTTTAGCATCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTTGGTATTCCAGGTAAGTTTCTTTTCTAGATCTCTTTCTTTCTTTCGTTTCGAATGGAAAGCCAAAGAAACGGGGACGTCTTCTGGAGGGCACGTCCCCAGAGGCAGTTTCTTGATGGATGACTCTTTGATTTAGGTGCTTCAACTTGTCGTTCTGTTTATCTTTGCTTTGAGTTTTTGGAAGAAGAGTGGGCCTAGATCAAAACAAAAAAGTAAACAAAAAAGATGCTAAACTATGATAGCATG</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTTGGTATTCCAGGTAAGTTTCTTTTCTAGATCTCTTTCTTTCTTTCGTTTCGAATGGAAAGCCAAAGAAACGGGGRCGTCTTCTGGAGGGCACGTCCCCAGAGGCAGTTTCTTGATGGATGACTCTTTGATTTAGGTGCTTCAACTTGTCGTTCTGTTTATCTTTGCTTTGAGTTTTTGGAAGAAGAGTGGGCCTAGATCAAAACAAAAAAGTAAACAAAAAAGATGCTAAACTATGATAGCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34599</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>389267</contig_pos>
        <strand>+</strand>
        <context>AGTTGTGGCT[A/G]CACCTGCAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCAATCTATGCTTAACCAGGGAACAGGAAGAATTAGTCCAGTTGTGGCT</left_flank>
        <right_flank>CACCTGCAACGTCTACAGAAGAAAAGAAGGTTGAAGAGCAAAAGATAGAA</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCTGTTATTGAAAATGTAGGTCAAAATGTAGAAAATGTGGTACTGAAATAGTATGTTTCTGTTTTTTTCAGACAATGCTTGGAGAATTGAACAAAGAACAAAACGATTTTGAGAAGCAACTTCAAGAGGAACGAGAAAAACTCAAAAACATTGATTTGCCATGGCAAGGACTCCCGGACGAAGTTTCAGCAAAGAAGCAGATGATGTCATTGTCAACGGATACCAGAAACTTTCTTCGTGATTCTGCAGCCAATAGTGAATACAGTTTTGAGCAACAACAAGCAATGGCTGCTCTACTTCTCAGAGAAGACCCAAATTTAGCTAACGTTCGATTCCAATTAGTCCCAAAACAGTGAGCATCCGTTTTCAAGGAAAGTACAGTAGCCTGATTTCAGAGTCAAAGAAAACCAATTCTGGCAGAACTATTTCTATCGCATCGGACTTATTCGTCAATCTATGCTTAACCAGGGAACAGGAAGAATTAGTCCAGTTGTGGCTGCACCTGCAACGTCTACAGAAGAAAAGAAGGTTGAAGAGCAAAAGATAGAAGCTGCCCCGGAAGTTTCTGACACGCAGGAGGCGAAGGTTGAAGAACCAGAAGTCGTTAAGGAAGAAGAAGTTAAGCAAGAGTCTGAACAAGTTCCAGCAAATAATGAATCAGAAGAAGACGAGGAGGTGAAAGAGACTGTTCTCGAGCAACCAGCAGCTCCTGGAGAGCAGACATTAACTAGTGTCGGTGAGTCATATAAGACAGTCCGGCGGTCCAGTGGAGCTTGTATGTGCAGTGCCACGTCAGCTACTCACCGAAGCCACAACCACATAAAATCTTGAATGAATTTTCAGACGAAGAATGGGAACGAGAAATTCTCGCGGATCTCAATGACTACGAAGATGTCGTCGAAAAAACTGGAGGAAAAGACGAGGAAGCATGGGAGGCTGAGATTCAGGAACTCCTCAATGCTGAATAATTTTTCTTTTTATTCTCCTTATTTCACTTTC</canonical>
            <polymorphic>TGCTGTTATTGAAAATGTAGGTCAAAATGTAGAAAATGTGGTACTGAAATAGTATGTTTCTGTTTTTTTCAGACAATGCTTGGAGAATTGAACAAAGAACAAAACGATTTTGAGAAGCAACTTCAAGAGGAACGAGAAAAACTCAAAAACATTGATTTGCCATGGCAAGGACTCCCGGACGAAGTTTCAGCAAAGAAGCAGATGATGTCATTGTCAACGGATACCAGAAACTTTCTTCGTGATTCTGCAGCCAATAGTGAATACAGTTTTGAGCAACAACAAGCAATGGCTGCTCTACTTCTCAGAGAAGACCCAAATTTAGCTAACGTTCGATTCCAATTAGTCCCAAAACAGTGAGCATCCGTTTTCAAGGAAAGTACAGTAGCCTGATTTCAGAGTCAAAGAAAACCAATTCTGGCAGAACTATTTCTATCGCATCGGACTTATTCGTCAATCTATGCTTAACCAGGGAACAGGAAGAATTAGTCCAGTTGTGGCTRCACCTGCAACGTCTACAGAAGAAAAGAAGGTTGAAGAGCAAAAGATAGAAGCTGCCCCGGAAGTTTCTGACACGCAGGAGGCGAAGGTTGAAGAACCAGAAGTCGTTAAGGAAGAAGAAGTTAAGCAAGAGTCTGAACAAGTTCCAGCAAATAATGAATCAGAAGAAGACGAGGAGGTGAAAGAGACTGTTCTCGAGCAACCAGCAGCTCCTGGAGAGCAGACATTAACTAGTGTCGGTGAGTCATATAAGACAGTCCGGCGGTCCAGTGGAGCTTGTATGTGCAGTGCCACGTCAGCTACTCACCGAAGCCACAACCACATAAAATCTTGAATGAATTTTCAGACGAAGAATGGGAACGAGAAATTCTCGCGGATCTCAATGACTACGAAGATGTCGTCGAAAAAACTGGAGGAAAAGACGAGGAAGCATGGGAGGCTGAGATTCAGGAACTCCTCAATGCTGAATAATTTTTCTTTTTATTCTCCTTATTTCACTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>293 250 208 153 54 42</canonical_bands>
                <polymorphic_bands>293 262 250 153 42</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>277 253 247 217 6</canonical_bands>
                <polymorphic_bands>277 259 247 217</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>296 247 208 153 54 42</canonical_bands>
                <polymorphic_bands>296 262 247 153 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGAAAGTACAGTAGCCTGATTT</pcr_primer_p1>
		<pcr_primer_p2>CTTCTTCTTCCTTAACGACTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGAAAGTACAGTAGCCTGATTTCAGAGTCAAAGAAAACCAATTCTGGCAGAACTATTTCTATCGCATCGGACTTATTCGTCAATCTATGCTTAACCAGGGAACAGGAAGAATTAGTCCAGTTGTGGCTGCACCTGCAACGTCTACAGAAGAAAAGAAGGTTGAAGAGCAAAAGATAGAAGCTGCCCCGGAAGTTTCTGACACGCAGGAGGCGAAGGTTGAAGAACCAGAAGTCGTTAAGGAAGAAGAAG</canonical_amplicon>
		<polymorphic_amplicon>AGGAAAGTACAGTAGCCTGATTTCAGAGTCAAAGAAAACCAATTCTGGCAGAACTATTTCTATCGCATCGGACTTATTCGTCAATCTATGCTTAACCAGGGAACAGGAAGAATTAGTCCAGTTGTGGCTRCACCTGCAACGTCTACAGAAGAAAAGAAGGTTGAAGAGCAAAAGATAGAAGCTGCCCCGGAAGTTTCTGACACGCAGGAGGCGAAGGTTGAAGAACCAGAAGTCGTTAAGGAAGAAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34600</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>409739</contig_pos>
        <strand>+</strand>
        <context>GTGTTGCGTC[A/G]AAGAAATGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCATCAGATTGGCTCACTTTCACATCAATTCCCGACTCGTGTTGCGTC</left_flank>
        <right_flank>AAGAAATGGAGGGATGCGTACGGGAGAATGCTCCACTGTTCGAAGCCGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACAACAACAACTACCGTAACCTAAAATATGTTTATTTTGAACTTTATTTCAATGGTTTTCGCTGCTTTTAGTCGAGTTGTTTCTCCTCGAAAAGTTTTTAAAAAATTCTGGTTACGGTAGTTGTCGGTGTGAAATCTTCGGCCACGGCTCCGGTTTTGTTTGTACCGAAATAATATTTTCACTTGGGTCCAAAACAGTGGGTCAAAAATCGCGCCCAGATAACTTTTAGACCAGAAGAAATCTGAAAATTTCAAATGTTGCCTTGGAACCAAGTGTATTTTCATTTTGTATTACTTTGTTCTGAAGTTGCTTGAGAATCAGGTCAAATGTTCGCGCAATTCATTTCAACTCAAGTTTTCTGTGCAAATTGAAAATTTTTGAGTATTTTGAAAATTCCCATTTTCATCCAATAAACTTTTTCAGTTATTTGAATGCTGTGGAGTGACGAATTCATCAGATTGGCTCACTTTCACATCAATTCCCGACTCGTGTTGCGTCGAAGAAATGGAGGGATGCGTACGGGAGAATGCTCCACTGTTCGAAGCCGGATGCATTCACAGTGTTGAACGTTAGTCGTTTTTTTTTTTGAAAGAAGAAGAGATCAAAGTGTGCTCTGTTGCACTTTGTCAATAGGGCATGATTAGGTGGGAATTCAAAATTGAATTCTTCGAATTTCAGAATGGACACTCAAAAATGGAGCGATGGTTGGTGGGATCTGCGCAGTGTTGGCCGCCATTCAACTGGTTGGAGTCTGTTTCGCTTGTTGTCTTTCAAAATCAATTCTCAAGGATTTTCATGATTTTTATTACTAGCTATTTCAATTCATTTCTCTGCCTAGTTCTTCCCTTTCCTGCATACAACAAATAATAATAATAATTCATAATTTATTTTTTTACAATGAAAATGGAAATACAGACTTTGAATATAAGTAAAATTCGGTAATTGAATCATATTCAAAGTTCAGAAAAAAAGGACTGGGATGAAAATTGGGTTTACCCT</canonical>
            <polymorphic>CACAACAACAACTACCGTAACCTAAAATATGTTTATTTTGAACTTTATTTCAATGGTTTTCGCTGCTTTTAGTCGAGTTGTTTCTCCTCGAAAAGTTTTTAAAAAATTCTGGTTACGGTAGTTGTCGGTGTGAAATCTTCGGCCACGGCTCCGGTTTTGTTTGTACCGAAATAATATTTTCACTTGGGTCCAAAACAGTGGGTCAAAAATCGCGCCCAGATAACTTTTAGACCAGAAGAAATCTGAAAATTTCAAATGTTGCCTTGGAACCAAGTGTATTTTCATTTTGTATTACTTTGTTCTGAAGTTGCTTGAGAATCAGGTCAAATGTTCGCGCAATTCATTTCAACTCAAGTTTTCTGTGCAAATTGAAAATTTTTGAGTATTTTGAAAATTCCCATTTTCATCCAATAAACTTTTTCAGTTATTTGAATGCTGTGGAGTGACGAATTCATCAGATTGGCTCACTTTCACATCAATTCCCGACTCGTGTTGCGTCRAAGAAATGGAGGGATGCGTACGGGAGAATGCTCCACTGTTCGAAGCCGGATGCATTCACAGTGTTGAACGTTAGTCGTTTTTTTTTTTGAAAGAAGAAGAGATCAAAGTGTGCTCTGTTGCACTTTGTCAATAGGGCATGATTAGGTGGGAATTCAAAATTGAATTCTTCGAATTTCAGAATGGACACTCAAAAATGGAGCGATGGTTGGTGGGATCTGCGCAGTGTTGGCCGCCATTCAACTGGTTGGAGTCTGTTTCGCTTGTTGTCTTTCAAAATCAATTCTCAAGGATTTTCATGATTTTTATTACTAGCTATTTCAATTCATTTCTCTGCCTAGTTCTTCCCTTTCCTGCATACAACAAATAATAATAATAATTCATAATTTATTTTTTTACAATGAAAATGGAAATACAGACTTTGAATATAAGTAAAATTCGGTAATTGAATCATATTCAAAGTTCAGAAAAAAAGGACTGGGATGAAAATTGGGTTTACCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>410 330 129 74 42 15</canonical_bands>
                <polymorphic_bands>452 330 129 74 15</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCATCCAATAAACTTTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>ACCTAATCATGCCCTATTGAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTCATCCAATAAACTTTTTCAGTTATTTGAATGCTGTGGAGTGACGAATTCATCAGATTGGCTCACTTTCACATCAATTCCCGACTCGTGTTGCGTCGAAGAAATGGAGGGATGCGTACGGGAGAATGCTCCACTGTTCGAAGCCGGATGCATTCACAGTGTTGAACGTTAGTCGTTTTTTTTTTTGAAAGAAGAAGAGATCAAAGTGTGCTCTGTTGCACTTTGTCAATAGGGCATGATTAGGT</canonical_amplicon>
		<polymorphic_amplicon>TTTCATCCAATAAACTTTTTCAGTTATTTGAATGCTGTGGAGTGACGAATTCATCAGATTGGCTCACTTTCACATCAATTCCCGACTCGTGTTGCGTCRAAGAAATGGAGGGATGCGTACGGGAGAATGCTCCACTGTTCGAAGCCGGATGCATTCACAGTGTTGAACGTTAGTCGTTTTTTTTTTTGAAAGAAGAAGAGATCAAAGTGTGCTCTGTTGCACTTTGTCAATAGGGCATGATTAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34601</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>409817</contig_pos>
        <strand>+</strand>
        <context>ACGTTAGTCG[A/G]TTTTTTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGCTCCACTGTTCGAAGCCGGATGCATTCACAGTGTTGAACGTTAGTCG</left_flank>
        <right_flank>TTTTTTTTTTGAAAGAAGAAGAGATCAAAGTGTGCTCTGTTGCACTTTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTCTCCTCGAAAAGTTTTTAAAAAATTCTGGTTACGGTAGTTGTCGGTGTGAAATCTTCGGCCACGGCTCCGGTTTTGTTTGTACCGAAATAATATTTTCACTTGGGTCCAAAACAGTGGGTCAAAAATCGCGCCCAGATAACTTTTAGACCAGAAGAAATCTGAAAATTTCAAATGTTGCCTTGGAACCAAGTGTATTTTCATTTTGTATTACTTTGTTCTGAAGTTGCTTGAGAATCAGGTCAAATGTTCGCGCAATTCATTTCAACTCAAGTTTTCTGTGCAAATTGAAAATTTTTGAGTATTTTGAAAATTCCCATTTTCATCCAATAAACTTTTTCAGTTATTTGAATGCTGTGGAGTGACGAATTCATCAGATTGGCTCACTTTCACATCAATTCCCGACTCGTGTTGCGTCGAAGAAATGGAGGGATGCGTACGGGAGAATGCTCCACTGTTCGAAGCCGGATGCATTCACAGTGTTGAACGTTAGTCGTTTTTTTTTTTGAAAGAAGAAGAGATCAAAGTGTGCTCTGTTGCACTTTGTCAATAGGGCATGATTAGGTGGGAATTCAAAATTGAATTCTTCGAATTTCAGAATGGACACTCAAAAATGGAGCGATGGTTGGTGGGATCTGCGCAGTGTTGGCCGCCATTCAACTGGTTGGAGTCTGTTTCGCTTGTTGTCTTTCAAAATCAATTCTCAAGGATTTTCATGATTTTTATTACTAGCTATTTCAATTCATTTCTCTGCCTAGTTCTTCCCTTTCCTGCATACAACAAATAATAATAATAATTCATAATTTATTTTTTTACAATGAAAATGGAAATACAGACTTTGAATATAAGTAAAATTCGGTAATTGAATCATATTCAAAGTTCAGAAAAAAAGGACTGGGATGAAAATTGGGTTTACCCTGGTTGGAGAGCTCAAAGTGGAAAAGTGTGTGTACCTTGTGCTGGAGCTTTTGACAACAGAACAGAACGTGAGTAAAAA</canonical>
            <polymorphic>TGTTTCTCCTCGAAAAGTTTTTAAAAAATTCTGGTTACGGTAGTTGTCGGTGTGAAATCTTCGGCCACGGCTCCGGTTTTGTTTGTACCGAAATAATATTTTCACTTGGGTCCAAAACAGTGGGTCAAAAATCGCGCCCAGATAACTTTTAGACCAGAAGAAATCTGAAAATTTCAAATGTTGCCTTGGAACCAAGTGTATTTTCATTTTGTATTACTTTGTTCTGAAGTTGCTTGAGAATCAGGTCAAATGTTCGCGCAATTCATTTCAACTCAAGTTTTCTGTGCAAATTGAAAATTTTTGAGTATTTTGAAAATTCCCATTTTCATCCAATAAACTTTTTCAGTTATTTGAATGCTGTGGAGTGACGAATTCATCAGATTGGCTCACTTTCACATCAATTCCCGACTCGTGTTGCGTCGAAGAAATGGAGGGATGCGTACGGGAGAATGCTCCACTGTTCGAAGCCGGATGCATTCACAGTGTTGAACGTTAGTCGRTTTTTTTTTTGAAAGAAGAAGAGATCAAAGTGTGCTCTGTTGCACTTTGTCAATAGGGCATGATTAGGTGGGAATTCAAAATTGAATTCTTCGAATTTCAGAATGGACACTCAAAAATGGAGCGATGGTTGGTGGGATCTGCGCAGTGTTGGCCGCCATTCAACTGGTTGGAGTCTGTTTCGCTTGTTGTCTTTCAAAATCAATTCTCAAGGATTTTCATGATTTTTATTACTAGCTATTTCAATTCATTTCTCTGCCTAGTTCTTCCCTTTCCTGCATACAACAAATAATAATAATAATTCATAATTTATTTTTTTACAATGAAAATGGAAATACAGACTTTGAATATAAGTAAAATTCGGTAATTGAATCATATTCAAAGTTCAGAAAAAAAGGACTGGGATGAAAATTGGGTTTACCCTGGTTGGAGAGCTCAAAGTGGAAAAGTGTGTGTACCTTGTGCTGGAGCTTTTGACAACAGAACAGAACGTGAGTAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCATCCAATAAACTTTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>ACCTAATCATGCCCTATTGAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTCATCCAATAAACTTTTTCAGTTATTTGAATGCTGTGGAGTGACGAATTCATCAGATTGGCTCACTTTCACATCAATTCCCGACTCGTGTTGCGTCGAAGAAATGGAGGGATGCGTACGGGAGAATGCTCCACTGTTCGAAGCCGGATGCATTCACAGTGTTGAACGTTAGTCGTTTTTTTTTTTGAAAGAAGAAGAGATCAAAGTGTGCTCTGTTGCACTTTGTCAATAGGGCATGATTAGGT</canonical_amplicon>
		<polymorphic_amplicon>TTTCATCCAATAAACTTTTTCAGTTATTTGAATGCTGTGGAGTGACGAATTCATCAGATTGGCTCACTTTCACATCAATTCCCGACTCGTGTTGCGTCGAAGAAATGGAGGGATGCGTACGGGAGAATGCTCCACTGTTCGAAGCCGGATGCATTCACAGTGTTGAACGTTAGTCGRTTTTTTTTTTGAAAGAAGAAGAGATCAAAGTGTGCTCTGTTGCACTTTGTCAATAGGGCATGATTAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34602</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>446298</contig_pos>
        <strand></strand>
        <context>GTTCGCTCAG[C/T]CAGATTCGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTCGTTTTTTCTTGCCGTTTTACTCCCGATTTTTGGAAGTTCGCTCAG</left_flank>
        <right_flank>CAGATTCGCAACGACACTCCGGTCTCCCACCTGCGCCTTGTTTAGCGGCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCTAGTCGCCTCCTTATCGATACGAGCGGGCCGTTGACGGGTAGGCGACGGACCGTTCTGTCGGCGGCCCGTTCGTCTATAGAAACAGACAACACAGACAAAGTGGGACTGGCGGATAACTGCTAGATGCCAGTTGAAGAGGCGCGGACGGCGTATAACTGGTAGATGCCAGTTGAAGAGGCGCGGAAAGATGAATAGAGTTTTCGAACGTAAATCTGCTGAAAATGAAGTTGTTGATCTCAAAAAAAGGTGTGCTTTAGAATTTGAAGCTCATTTTCTTTGTTGAGGGAGAAAGAACGGCTGACTCAGTGTTCATTAACTCGGGAGATACGTTCTGGGCTGAAGTTTCGACTTGTTCTGAAGCAATTCGACGGAAATTTTTTTTAAATTTGTATTCCTGTTACATGAAAAATTTTTCCGATTTTTTTTTGTTAAGAAAATTACGGAAATTTCGTTTTTTCTTGCCGTTTTACTCCCGATTTTTGGAAGTTCGCTCAGCCAGATTCGCAACGACACTCCGGTCTCCCACCTGCGCCTTGTTTAGCGGCACAAGACATTACCAAAATTTCGGACACTCCACCGATTCCGAGGGTTTTCACCGAATTCTACTCAGCAAATTTTTGGCACAAATATATTTCATGATTTTCCACCTGAAAGCCTAGAAAAACAAAACCAAATGCCATAAAACGGTGAAAAGTACAAAAATTTCTGAAAATGAATGACAAGCTATTTTCGCAACATTTTCGAAACTCTATGGATAGAGACGATATGCGCAGGTGGTTCAAGAAAGGGCACGGCAGCGGCACGGTAGCGGCACGCCACATGCTTGCTAGGGGCACGGGTGTGGTGTTCCAAAAGCACTTTCAACGCGGCACGGTGCCGTTTGGATGCAGNNNNNNNNNNCTAGCCGACGATGCAAGTATCATCTTCGAAAACACCGGAGATCTTCTCAAAAGTATGAAGAATTTCGCTGGTAGCGTCGGAGAGCAGGAAAAGAAG</canonical>
            <polymorphic>GTCTAGTCGCCTCCTTATCGATACGAGCGGGCCGTTGACGGGTAGGCGACGGACCGTTCTGTCGGCGGCCCGTTCGTCTATAGAAACAGACAACACAGACAAAGTGGGACTGGCGGATAACTGCTAGATGCCAGTTGAAGAGGCGCGGACGGCGTATAACTGGTAGATGCCAGTTGAAGAGGCGCGGAAAGATGAATAGAGTTTTCGAACGTAAATCTGCTGAAAATGAAGTTGTTGATCTCAAAAAAAGGTGTGCTTTAGAATTTGAAGCTCATTTTCTTTGTTGAGGGAGAAAGAACGGCTGACTCAGTGTTCATTAACTCGGGAGATACGTTCTGGGCTGAAGTTTCGACTTGTTCTGAAGCAATTCGACGGAAATTTTTTTTAAATTTGTATTCCTGTTACATGAAAAATTTTTCCGATTTTTTTTTGTTAAGAAAATTACGGAAATTTCGTTTTTTCTTGCCGTTTTACTCCCGATTTTTGGAAGTTCGCTCAGYCAGATTCGCAACGACACTCCGGTCTCCCACCTGCGCCTTGTTTAGCGGCACAAGACATTACCAAAATTTCGGACACTCCACCGATTCCGAGGGTTTTCACCGAATTCTACTCAGCAAATTTTTGGCACAAATATATTTCATGATTTTCCACCTGAAAGCCTAGAAAAACAAAACCAAATGCCATAAAACGGTGAAAAGTACAAAAATTTCTGAAAATGAATGACAAGCTATTTTCGCAACATTTTCGAAACTCTATGGATAGAGACGATATGCGCAGGTGGTTCAAGAAAGGGCACGGCAGCGGCACGGTAGCGGCACGCCACATGCTTGCTAGGGGCACGGGTGTGGTGTTCCAAAAGCACTTTCAACGCGGCACGGTGCCGTTTGGATGCAGNNNNNNNNNNCTAGCCGACGATGCAAGTATCATCTTCGAAAACACCGGAGATCTTCTCAAAAGTATGAAGAATTTCGCTGGTAGCGTCGGAGAGCAGGAAAAGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCTNAGC</site>
                <isoschizomers>
                    <enzyme>BlpI</enzyme>
                    <enzyme>Bpu1102I</enzyme>
                    <enzyme>Bsp1720I</enzyme>
                    <enzyme>CelII</enzyme>
                    <enzyme>EspI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>356 228 181 149 86</canonical_bands>
                <polymorphic_bands>584 181 149 86</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>202 181 159 159 92 69 39 37 31 31</canonical_bands>
                <polymorphic_bands>318 202 181 92 69 39 37 31 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGTTTCGACTTGTTCTGAAG</pcr_primer_p1>
		<pcr_primer_p2>CGAAATTTTGGTAATGTCTTGT</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>GAAGTTTCGACTTGTTCTGAAGCAATTCGACGGAAATTTTTTTTAAATTTGTATTCCTGTTACATGAAAAATTTTTCCGATTTTTTTTTGTTAAGAAAATTACGGAAATTTCGTTTTTTCTTGCCGTTTTACTCCCGATTTTTGGAAGTTCGCTCAGCCAGATTCGCAACGACACTCCGGTCTCCCACCTGCGCCTTGTTTAGCGGCACAAGACATTACCAAAATTTCG</canonical_amplicon>
		<polymorphic_amplicon>GAAGTTTCGACTTGTTCTGAAGCAATTCGACGGAAATTTTTTTTAAATTTGTATTCCTGTTACATGAAAAATTTTTCCGATTTTTTTTTGTTAAGAAAATTACGGAAATTTCGTTTTTTCTTGCCGTTTTACTCCCGATTTTTGGAAGTTCGCTCAGYCAGATTCGCAACGACACTCCGGTCTCCCACCTGCGCCTTGTTTAGCGGCACAAGACATTACCAAAATTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34603</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>453420</contig_pos>
        <strand>+</strand>
        <context>CACTCAATTC[C/T]TTGTCTTTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCAAAAATTGTTCCCTGAACCTGATCGAAAAATTCATTTTCACTCAATTC</left_flank>
        <right_flank>TTGTCTTTCATACAGTAGTTTGCTGCTTGAATAGTCTGAAAAAATTTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGGGCACCGGTGCCCCAAGTAGCGGCACATATGCCAAAAATTTGCTGAGTAGAATATGAAGTATACTCTTCTCAAACTCACTAAGTTCAACTGAATTTGGAGTCATAGCGTCCATGGTTCCAACATCGACCATCCACGTTGCAGTGTCTATAGTGCTCATACTCTTGAATACTGGTTTGACCAATTTCGACACTGACAAGAATCCTTTAGTAAGATCTGGCACAGGAGTCAGGAATCTGCCGACAAACCAGGATCTGGAAGTTAAATTTTTTTATTTGGAGTGATTCAGAAAGATTACCCATCTTTCAAATATCCGATTCGATCTACAATGTAAAGACAGGTGGAATTATCTTTCGGGTCTGGACATTCGATTGCTCTGGAAATAAAAATAAACATTGTTTTCAGATTTTTCTGCTATAGAAATTACACAACTCGGTTCTGTTGATTCGCAAAAATTGTTCCCTGAACCTGATCGAAAAATTCATTTTCACTCAATTCCTTGTCTTTCATACAGTAGTTTGCTGCTTGAATAGTCTGAAAAAATTTTAATTTTTAATTATCATTCTGGTACAAAAAAATCGGAGCTGTGGCCGCGGACGAAGGTTCCACAACGACAACTACCGTAACCTAAAAATATTGTCTACGTTTTCTGTCCAGACAAGACGGAGAATGAAAAAAAAGTTTGATAGCAAAAAGATGGTCAAAAAATTCACGAAAATCAAGATATGAAATCCGGGAAATTAACATATACGGTAGTTGTTGTGGGACCTTCCGATTTTCATGTACCAGAAAACAAAAATCAAACTTACAAGAAACAGAGCAGCCAGAAGAGCAACCGACTTGAGCATGACTTTAATTTTCTGAAAGATCCTATTACAAATGGGTGATCCATGATGACAATTCGTTCATTTTTTTTTCTCTTTGTCAGCGTGGAATCAGGTCCAAAAAATAGTTCAAAAGGTGATTCAGATTATTGCATGCGAGAGATGGGGATTAATG</canonical>
            <polymorphic>CCGGGCACCGGTGCCCCAAGTAGCGGCACATATGCCAAAAATTTGCTGAGTAGAATATGAAGTATACTCTTCTCAAACTCACTAAGTTCAACTGAATTTGGAGTCATAGCGTCCATGGTTCCAACATCGACCATCCACGTTGCAGTGTCTATAGTGCTCATACTCTTGAATACTGGTTTGACCAATTTCGACACTGACAAGAATCCTTTAGTAAGATCTGGCACAGGAGTCAGGAATCTGCCGACAAACCAGGATCTGGAAGTTAAATTTTTTTATTTGGAGTGATTCAGAAAGATTACCCATCTTTCAAATATCCGATTCGATCTACAATGTAAAGACAGGTGGAATTATCTTTCGGGTCTGGACATTCGATTGCTCTGGAAATAAAAATAAACATTGTTTTCAGATTTTTCTGCTATAGAAATTACACAACTCGGTTCTGTTGATTCGCAAAAATTGTTCCCTGAACCTGATCGAAAAATTCATTTTCACTCAATTCYTTGTCTTTCATACAGTAGTTTGCTGCTTGAATAGTCTGAAAAAATTTTAATTTTTAATTATCATTCTGGTACAAAAAAATCGGAGCTGTGGCCGCGGACGAAGGTTCCACAACGACAACTACCGTAACCTAAAAATATTGTCTACGTTTTCTGTCCAGACAAGACGGAGAATGAAAAAAAAGTTTGATAGCAAAAAGATGGTCAAAAAATTCACGAAAATCAAGATATGAAATCCGGGAAATTAACATATACGGTAGTTGTTGTGGGACCTTCCGATTTTCATGTACCAGAAAACAAAAATCAAACTTACAAGAAACAGAGCAGCCAGAAGAGCAACCGACTTGAGCATGACTTTAATTTTCTGAAAGATCCTATTACAAATGGGTGATCCATGATGACAATTCGTTCATTTTTTTTTCTCTTTGTCAGCGTGGAATCAGGTCCAAAAAATAGTTCAAAAGGTGATTCAGATTATTGCATGCGAGAGATGGGGATTAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTGTTGATTCGCAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTGATTTTTGTTTTCTGGTACAT</pcr_primer_p2>
		<pcr_amplicon_size>367</pcr_amplicon_size>
		<canonical_amplicon>TTCTGTTGATTCGCAAAAATTGTTCCCTGAACCTGATCGAAAAATTCATTTTCACTCAATTCCTTGTCTTTCATACAGTAGTTTGCTGCTTGAATAGTCTGAAAAAATTTTAATTTTTAATTATCATTCTGGTACAAAAAAATCGGAGCTGTGGCCGCGGACGAAGGTTCCACAACGACAACTACCGTAACCTAAAAATATTGTCTACGTTTTCTGTCCAGACAAGACGGAGAATGAAAAAAAAGTTTGATAGCAAAAAGATGGTCAAAAAATTCACGAAAATCAAGATATGAAATCCGGGAAATTAACATATACGGTAGTTGTTGTGGGACCTTCCGATTTTCATGTACCAGAAAACAAAAATCAA</canonical_amplicon>
		<polymorphic_amplicon>TTCTGTTGATTCGCAAAAATTGTTCCCTGAACCTGATCGAAAAATTCATTTTCACTCAATTCYTTGTCTTTCATACAGTAGTTTGCTGCTTGAATAGTCTGAAAAAATTTTAATTTTTAATTATCATTCTGGTACAAAAAAATCGGAGCTGTGGCCGCGGACGAAGGTTCCACAACGACAACTACCGTAACCTAAAAATATTGTCTACGTTTTCTGTCCAGACAAGACGGAGAATGAAAAAAAAGTTTGATAGCAAAAAGATGGTCAAAAAATTCACGAAAATCAAGATATGAAATCCGGGAAATTAACATATACGGTAGTTGTTGTGGGACCTTCCGATTTTCATGTACCAGAAAACAAAAATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34604</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>480400</contig_pos>
        <strand></strand>
        <context>Gcttcttctt[C/T]ttttttcttc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTTCTCTCTTTTTTGTCCTTACTGCTTGCCAACGTTAGGCTTCTTCTT</left_flank>
        <right_flank>TTTTTTCTTCTTCTCTTTTCCCTTTTCGTGTCATCCTTCTTCTTCTTCTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATAAATAATTTATAGATTTTTATTTTACAGAGTTTCTTTCGATGATTTACTGTATCCTGTTCCAGTTTTTTGTTAACCTTGTTTTGTTAATTTGTTGTTTTTAATTCTGTTTTCGAGTATTCAGTAAAACAATGTTCTCTTGCTCTGTTCATTTGTAATGTTTCCGGAAGTGTGCTCATGTCACATGGCATACCTGAAACGTTTCTAAACCTTCATTCTCTCTTTATTCGCACTGTTTTATTTACGCGTAGCGGCAGGAGTAGAGCGTAGCGAGAGATTCGAGAGTCAGCGGCACTCTCTTTTTCCTTTTTCTGTGTCAGTGTCTGCGCCTCTACCGTTATCGATTGTCAACGTGCTGGCTGTCTCTTCTTCTGATGTTTTCTGCTTCCACTTTTTCGCTATTCCTACTTGTTCCATATTTCTTGTCATGTTTGACCAGCGACTCTCGTTTTCTCTCTTTTTTGTCCTTACTGCTTGCCAACGTTAGGCTTCTTCTTCTTTTTTCTTCTTCTCTTTTCCCTTTTCGTGTCATCCTTCTTCTTCTTCTGCTACGCGTTCCCTTCTTCTTCTTCTTCTTGTTTGTCAGTTCATTCAGTGTCAAAAGTTCATAGATGCCCATTAATGACTCAAGTCCCAATTAGCCACCATCTTGAGAACAAAGTACGCATCGCTAGCAAAGAATATAGGGGCATCGAACAATTCTCCAACTACATCGTGTAGTCTCAAAGATGGGGTTATTCCTTTATGAAAGACTTCCGCTATAATCAGTCCGTTAGTTTACATTTCCGTCTCTTTCTCCTCTCATTTTGATCGACATGGATTACGAATCGGTGCTCCATGATGCTCCAAATATAGAAGAAATGGACGAAGAGATGGCTGAAGTGGATGATAGTGAGTTATTCGTTTTTATATCCTTATTGGATTTGGTGAAAAAAATCACGAGGCGTTGCTCATTCAAAATTTACGGCGTCTCGGGTAGCTGGTTGGAAGAGGAAGCT</canonical>
            <polymorphic>AAATAAATAATTTATAGATTTTTATTTTACAGAGTTTCTTTCGATGATTTACTGTATCCTGTTCCAGTTTTTTGTTAACCTTGTTTTGTTAATTTGTTGTTTTTAATTCTGTTTTCGAGTATTCAGTAAAACAATGTTCTCTTGCTCTGTTCATTTGTAATGTTTCCGGAAGTGTGCTCATGTCACATGGCATACCTGAAACGTTTCTAAACCTTCATTCTCTCTTTATTCGCACTGTTTTATTTACGCGTAGCGGCAGGAGTAGAGCGTAGCGAGAGATTCGAGAGTCAGCGGCACTCTCTTTTTCCTTTTTCTGTGTCAGTGTCTGCGCCTCTACCGTTATCGATTGTCAACGTGCTGGCTGTCTCTTCTTCTGATGTTTTCTGCTTCCACTTTTTCGCTATTCCTACTTGTTCCATATTTCTTGTCATGTTTGACCAGCGACTCTCGTTTTCTCTCTTTTTTGTCCTTACTGCTTGCCAACGTTAGGCTTCTTCTTYTTTTTTCTTCTTCTCTTTTCCCTTTTCGTGTCATCCTTCTTCTTCTTCTGCTACGCGTTCCCTTCTTCTTCTTCTTCTTGTTTGTCAGTTCATTCAGTGTCAAAAGTTCATAGATGCCCATTAATGACTCAAGTCCCAATTAGCCACCATCTTGAGAACAAAGTACGCATCGCTAGCAAAGAATATAGGGGCATCGAACAATTCTCCAACTACATCGTGTAGTCTCAAAGATGGGGTTATTCCTTTATGAAAGACTTCCGCTATAATCAGTCCGTTAGTTTACATTTCCGTCTCTTTCTCCTCTCATTTTGATCGACATGGATTACGAATCGGTGCTCCATGATGCTCCAAATATAGAAGAAATGGACGAAGAGATGGCTGAAGTGGATGATAGTGAGTTATTCGTTTTTATATCCTTATTGGATTTGGTGAAAAAAATCACGAGGCGTTGCTCATTCAAAATTTACGGCGTCTCGGGTAGCTGGTTGGAAGAGGAAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCTCTTCTTCTGATGTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>TATGAACTTTTGACACTGAATGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTCTCTTCTTCTGATGTTTTCTGCTTCCACTTTTTCGCTATTCCTACTTGTTCCATATTTCTTGTCATGTTTGACCAGCGACTCTCGTTTTCTCTCTTTTTTGTCCTTACTGCTTGCCAACGTTAGGCTTCTTCTTCTTTTTTCTTCTTCTCTTTTCCCTTTTCGTGTCATCCTTCTTCTTCTTCTGCTACGCGTTCCCTTCTTCTTCTTCTTCTTGTTTGTCAGTTCATTCAGTGTCAAAAGTTCATA</canonical_amplicon>
		<polymorphic_amplicon>TGTCTCTTCTTCTGATGTTTTCTGCTTCCACTTTTTCGCTATTCCTACTTGTTCCATATTTCTTGTCATGTTTGACCAGCGACTCTCGTTTTCTCTCTTTTTTGTCCTTACTGCTTGCCAACGTTAGGCTTCTTCTTYTTTTTTCTTCTTCTCTTTTCCCTTTTCGTGTCATCCTTCTTCTTCTTCTGCTACGCGTTCCCTTCTTCTTCTTCTTCTTGTTTGTCAGTTCATTCAGTGTCAAAAGTTCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34605</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>493063</contig_pos>
        <strand></strand>
        <context>TTTGGAACTT[T/G]WKGGGATTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTTGAAATGTTTATTGACCCGGAAGAGATTTTGGAGAGTGTTTGGAACTT</left_flank>
        <right_flank>TGGGGATTTGTTAAGAGGACATGCGGATATCAAAGATTTGCGAAATCAGA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTCAGAAGGCTGTTATGAAATCCGAGCAGGAAAAAAGCCTAGAAGAAATAACGGTAAGTTAAACTTCTCCCTTTTATAAATAGACATGCATCTAGTTCTCCTTCTTTCTACAGCGGTAAAAATTATAATTACATACTCAGAAAAATATAGAATCTTAAGTATTGTATTGAACAAGCTTGACCAAATGCTTAAAATTCAAATTTTCAGGAACAAGAACACCGAGATCTCTTTGTCAAGGCCTACAGAAAATATTACAAATTTTGCAAACGCTGCGAAAGTTATGAATATCGTAGTGATCTGCCTCGTTTTGGTTATAATGACAGAATTACCATGCAAATGATGGATCAAAAATATAAGAACGCCAGTTTGGAAAAATTGGAGTCAGTTTTAATCGAAATACAACGTGCTGAAAATGTATTGGGAGGCAATGAAGCGATACAGTTTCCGTTTGAAATGTTTATTGACCCGGAAGAGATTTTGGAGAGTGTTTGGAACTTTTGGGGATTTGTTAAGAGGACATGCGGATATCAAAGATTTGCGAAATCAGAACAGGAAAAAAGTCAAGAAGAAATAGCGGTGAGTTCAATTTTTCCCTTTTGTAAATGGAGACACAGCACCAATTTACTATTTTCCACCAATGTGAAAAACTATATATGATCAGAATGTGATTTCAGTACAACTTCTCGTTTTCGGAGGGAATTTTTGAACGAGTTTTTGACTTTATTCGGATTTTCGCCGAAATATTGTTCTACTGTAGAACGTTTCTAGTAATTGCTAACGTTTTTAGAAACAAAGACATGTAAAACAAAAATGTAAAAAATTAAATATTGTATTGAACGACATTTTTGTCCAGCTCAACTTATTGATCACTCTATCATTTTTGGAACTGATCTGTTCTGTTCAAATTTCAATATTTTTTGTCTTTACAATTTGATTCCCAATATGACTATGGAGACTGCAGTCTCCATAGTCATACTGCTCTGATTGTCGACTGCTCT</canonical>
            <polymorphic>CACTCAGAAGGCTGTTATGAAATCCGAGCAGGAAAAAAGCCTAGAAGAAATAACGGTAAGTTAAACTTCTCCCTTTTATAAATAGACATGCATCTAGTTCTCCTTCTTTCTACAGCGGTAAAAATTATAATTACATACTCAGAAAAATATAGAATCTTAAGTATTGTATTGAACAAGCTTGACCAAATGCTTAAAATTCAAATTTTCAGGAACAAGAACACCGAGATCTCTTTGTCAAGGCCTACAGAAAATATTACAAATTTTGCAAACGCTGCGAAAGTTATGAATATCGTAGTGATCTGCCTCGTTTTGGTTATAATGACAGAATTACCATGCAAATGATGGATCAAAAATATAAGAACGCCAGTTTGGAAAAATTGGAGTCAGTTTTAATCGAAATACAACGTGCTGAAAATGTATTGGGAGGCAATGAAGCGATACAGTTTCCGTTTGAAATGTTTATTGACCCGGAAGAGATTTTGGAGAGTGTTTGGAACTTKTGGGGATTTGTTAAGAGGACATGCGGATATCAAAGATTTGCGAAATCAGAACAGGAAAAAAGTCAAGAAGAAATAGCGGTGAGTTCAATTTTTCCCTTTTGTAAATGGAGACACAGCACCAATTTACTATTTTCCACCAATGTGAAAAACTATATATGATCAGAATGTGATTTCAGTACAACTTCTCGTTTTCGGAGGGAATTTTTGAACGAGTTTTTGACTTTATTCGGATTTTCGCCGAAATATTGTTCTACTGTAGAACGTTTCTAGTAATTGCTAACGTTTTTAGAAACAAAGACATGTAAAACAAAAATGTAAAAAATTAAATATTGTATTGAACGACATTTTTGTCCAGCTCAACTTATTGATCACTCTATCATTTTTGGAACTGATCTGTTCTGTTCAAATTTCAATATTTTTTGTCTTTACAATTTGATTCCCAATATGACTATGGAGACTGCAGTCTCCATAGTCATACTGCTCTGATTGTCGACTGCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAAAAATATAAGAACGCCAGT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTGAACTCACCGCTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATCAAAAATATAAGAACGCCAGTTTGGAAAAATTGGAGTCAGTTTTAATCGAAATACAACGTGCTGAAAATGTATTGGGAGGCAATGAAGCGATACAGTTTCCGTTTGAAATGTTTATTGACCCGGAAGAGATTTTGGAGAGTGTTTGGAACTTTTGGGGATTTGTTAAGAGGACATGCGGATATCAAAGATTTGCGAAATCAGAACAGGAAAAAAGTCAAGAAGAAATAGCGGTGAGTTCAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATCAAAAATATAAGAACGCCAGTTTGGAAAAATTGGAGTCAGTTTTAATCGAAATACAACGTGCTGAAAATGTATTGGGAGGCAATGAAGCGATACAGTTTCCGTTTGAAATGTTTATTGACCCGGAAGAGATTTTGGAGAGTGTTTGGAACTTKTGGGGATTTGTTAAGAGGACATGCGGATATCAAAGATTTGCGAAATCAGAACAGGAAAAAAGTCAAGAAGAAATAGCGGTGAGTTCAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34606</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>493064</contig_pos>
        <strand></strand>
        <context>TTGGAACTTK[T/A]KGGGATTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTGAAATGTTTATTGACCCGGAAGAGATTTTGGAGAGTGTTTGGAACTTT</left_flank>
        <right_flank>GGGGATTTGTTAAGAGGACATGCGGATATCAAAGATTTGCGAAATCAGAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCAGAAGGCTGTTATGAAATCCGAGCAGGAAAAAAGCCTAGAAGAAATAACGGTAAGTTAAACTTCTCCCTTTTATAAATAGACATGCATCTAGTTCTCCTTCTTTCTACAGCGGTAAAAATTATAATTACATACTCAGAAAAATATAGAATCTTAAGTATTGTATTGAACAAGCTTGACCAAATGCTTAAAATTCAAATTTTCAGGAACAAGAACACCGAGATCTCTTTGTCAAGGCCTACAGAAAATATTACAAATTTTGCAAACGCTGCGAAAGTTATGAATATCGTAGTGATCTGCCTCGTTTTGGTTATAATGACAGAATTACCATGCAAATGATGGATCAAAAATATAAGAACGCCAGTTTGGAAAAATTGGAGTCAGTTTTAATCGAAATACAACGTGCTGAAAATGTATTGGGAGGCAATGAAGCGATACAGTTTCCGTTTGAAATGTTTATTGACCCGGAAGAGATTTTGGAGAGTGTTTGGAACTTTTGGGGATTTGTTAAGAGGACATGCGGATATCAAAGATTTGCGAAATCAGAACAGGAAAAAAGTCAAGAAGAAATAGCGGTGAGTTCAATTTTTCCCTTTTGTAAATGGAGACACAGCACCAATTTACTATTTTCCACCAATGTGAAAAACTATATATGATCAGAATGTGATTTCAGTACAACTTCTCGTTTTCGGAGGGAATTTTTGAACGAGTTTTTGACTTTATTCGGATTTTCGCCGAAATATTGTTCTACTGTAGAACGTTTCTAGTAATTGCTAACGTTTTTAGAAACAAAGACATGTAAAACAAAAATGTAAAAAATTAAATATTGTATTGAACGACATTTTTGTCCAGCTCAACTTATTGATCACTCTATCATTTTTGGAACTGATCTGTTCTGTTCAAATTTCAATATTTTTTGTCTTTACAATTTGATTCCCAATATGACTATGGAGACTGCAGTCTCCATAGTCATACTGCTCTGATTGTCGACTGCTCTG</canonical>
            <polymorphic>ACTCAGAAGGCTGTTATGAAATCCGAGCAGGAAAAAAGCCTAGAAGAAATAACGGTAAGTTAAACTTCTCCCTTTTATAAATAGACATGCATCTAGTTCTCCTTCTTTCTACAGCGGTAAAAATTATAATTACATACTCAGAAAAATATAGAATCTTAAGTATTGTATTGAACAAGCTTGACCAAATGCTTAAAATTCAAATTTTCAGGAACAAGAACACCGAGATCTCTTTGTCAAGGCCTACAGAAAATATTACAAATTTTGCAAACGCTGCGAAAGTTATGAATATCGTAGTGATCTGCCTCGTTTTGGTTATAATGACAGAATTACCATGCAAATGATGGATCAAAAATATAAGAACGCCAGTTTGGAAAAATTGGAGTCAGTTTTAATCGAAATACAACGTGCTGAAAATGTATTGGGAGGCAATGAAGCGATACAGTTTCCGTTTGAAATGTTTATTGACCCGGAAGAGATTTTGGAGAGTGTTTGGAACTTTWGGGGATTTGTTAAGAGGACATGCGGATATCAAAGATTTGCGAAATCAGAACAGGAAAAAAGTCAAGAAGAAATAGCGGTGAGTTCAATTTTTCCCTTTTGTAAATGGAGACACAGCACCAATTTACTATTTTCCACCAATGTGAAAAACTATATATGATCAGAATGTGATTTCAGTACAACTTCTCGTTTTCGGAGGGAATTTTTGAACGAGTTTTTGACTTTATTCGGATTTTCGCCGAAATATTGTTCTACTGTAGAACGTTTCTAGTAATTGCTAACGTTTTTAGAAACAAAGACATGTAAAACAAAAATGTAAAAAATTAAATATTGTATTGAACGACATTTTTGTCCAGCTCAACTTATTGATCACTCTATCATTTTTGGAACTGATCTGTTCTGTTCAAATTTCAATATTTTTTGTCTTTACAATTTGATTCCCAATATGACTATGGAGACTGCAGTCTCCATAGTCATACTGCTCTGATTGTCGACTGCTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAAAAATATAAGAACGCCAGT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTGAACTCACCGCTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATCAAAAATATAAGAACGCCAGTTTGGAAAAATTGGAGTCAGTTTTAATCGAAATACAACGTGCTGAAAATGTATTGGGAGGCAATGAAGCGATACAGTTTCCGTTTGAAATGTTTATTGACCCGGAAGAGATTTTGGAGAGTGTTTGGAACTTTTGGGGATTTGTTAAGAGGACATGCGGATATCAAAGATTTGCGAAATCAGAACAGGAAAAAAGTCAAGAAGAAATAGCGGTGAGTTCAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATCAAAAATATAAGAACGCCAGTTTGGAAAAATTGGAGTCAGTTTTAATCGAAATACAACGTGCTGAAAATGTATTGGGAGGCAATGAAGCGATACAGTTTCCGTTTGAAATGTTTATTGACCCGGAAGAGATTTTGGAGAGTGTTTGGAACTTTWGGGGATTTGTTAAGAGGACATGCGGATATCAAAGATTTGCGAAATCAGAACAGGAAAAAAGTCAAGAAGAAATAGCGGTGAGTTCAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34607</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>493065</contig_pos>
        <strand></strand>
        <context>TGGAACTTKW[G/T]GGGATTTGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAAATGTTTATTGACCCGGAAGAGATTTTGGAGAGTGTTTGGAACTTTT</left_flank>
        <right_flank>GGGATTTGTTAAGAGGACATGCGGATATCAAAGATTTGCGAAATCAGAAC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAGAAGGCTGTTATGAAATCCGAGCAGGAAAAAAGCCTAGAAGAAATAACGGTAAGTTAAACTTCTCCCTTTTATAAATAGACATGCATCTAGTTCTCCTTCTTTCTACAGCGGTAAAAATTATAATTACATACTCAGAAAAATATAGAATCTTAAGTATTGTATTGAACAAGCTTGACCAAATGCTTAAAATTCAAATTTTCAGGAACAAGAACACCGAGATCTCTTTGTCAAGGCCTACAGAAAATATTACAAATTTTGCAAACGCTGCGAAAGTTATGAATATCGTAGTGATCTGCCTCGTTTTGGTTATAATGACAGAATTACCATGCAAATGATGGATCAAAAATATAAGAACGCCAGTTTGGAAAAATTGGAGTCAGTTTTAATCGAAATACAACGTGCTGAAAATGTATTGGGAGGCAATGAAGCGATACAGTTTCCGTTTGAAATGTTTATTGACCCGGAAGAGATTTTGGAGAGTGTTTGGAACTTTTGGGGATTTGTTAAGAGGACATGCGGATATCAAAGATTTGCGAAATCAGAACAGGAAAAAAGTCAAGAAGAAATAGCGGTGAGTTCAATTTTTCCCTTTTGTAAATGGAGACACAGCACCAATTTACTATTTTCCACCAATGTGAAAAACTATATATGATCAGAATGTGATTTCAGTACAACTTCTCGTTTTCGGAGGGAATTTTTGAACGAGTTTTTGACTTTATTCGGATTTTCGCCGAAATATTGTTCTACTGTAGAACGTTTCTAGTAATTGCTAACGTTTTTAGAAACAAAGACATGTAAAACAAAAATGTAAAAAATTAAATATTGTATTGAACGACATTTTTGTCCAGCTCAACTTATTGATCACTCTATCATTTTTGGAACTGATCTGTTCTGTTCAAATTTCAATATTTTTTGTCTTTACAATTTGATTCCCAATATGACTATGGAGACTGCAGTCTCCATAGTCATACTGCTCTGATTGTCGACTGCTCTGA</canonical>
            <polymorphic>CTCAGAAGGCTGTTATGAAATCCGAGCAGGAAAAAAGCCTAGAAGAAATAACGGTAAGTTAAACTTCTCCCTTTTATAAATAGACATGCATCTAGTTCTCCTTCTTTCTACAGCGGTAAAAATTATAATTACATACTCAGAAAAATATAGAATCTTAAGTATTGTATTGAACAAGCTTGACCAAATGCTTAAAATTCAAATTTTCAGGAACAAGAACACCGAGATCTCTTTGTCAAGGCCTACAGAAAATATTACAAATTTTGCAAACGCTGCGAAAGTTATGAATATCGTAGTGATCTGCCTCGTTTTGGTTATAATGACAGAATTACCATGCAAATGATGGATCAAAAATATAAGAACGCCAGTTTGGAAAAATTGGAGTCAGTTTTAATCGAAATACAACGTGCTGAAAATGTATTGGGAGGCAATGAAGCGATACAGTTTCCGTTTGAAATGTTTATTGACCCGGAAGAGATTTTGGAGAGTGTTTGGAACTTTTKGGGATTTGTTAAGAGGACATGCGGATATCAAAGATTTGCGAAATCAGAACAGGAAAAAAGTCAAGAAGAAATAGCGGTGAGTTCAATTTTTCCCTTTTGTAAATGGAGACACAGCACCAATTTACTATTTTCCACCAATGTGAAAAACTATATATGATCAGAATGTGATTTCAGTACAACTTCTCGTTTTCGGAGGGAATTTTTGAACGAGTTTTTGACTTTATTCGGATTTTCGCCGAAATATTGTTCTACTGTAGAACGTTTCTAGTAATTGCTAACGTTTTTAGAAACAAAGACATGTAAAACAAAAATGTAAAAAATTAAATATTGTATTGAACGACATTTTTGTCCAGCTCAACTTATTGATCACTCTATCATTTTTGGAACTGATCTGTTCTGTTCAAATTTCAATATTTTTTGTCTTTACAATTTGATTCCCAATATGACTATGGAGACTGCAGTCTCCATAGTCATACTGCTCTGATTGTCGACTGCTCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAAAAATATAAGAACGCCAGT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTGAACTCACCGCTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATCAAAAATATAAGAACGCCAGTTTGGAAAAATTGGAGTCAGTTTTAATCGAAATACAACGTGCTGAAAATGTATTGGGAGGCAATGAAGCGATACAGTTTCCGTTTGAAATGTTTATTGACCCGGAAGAGATTTTGGAGAGTGTTTGGAACTTTTGGGGATTTGTTAAGAGGACATGCGGATATCAAAGATTTGCGAAATCAGAACAGGAAAAAAGTCAAGAAGAAATAGCGGTGAGTTCAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATCAAAAATATAAGAACGCCAGTTTGGAAAAATTGGAGTCAGTTTTAATCGAAATACAACGTGCTGAAAATGTATTGGGAGGCAATGAAGCGATACAGTTTCCGTTTGAAATGTTTATTGACCCGGAAGAGATTTTGGAGAGTGTTTGGAACTTTTKGGGATTTGTTAAGAGGACATGCGGATATCAAAGATTTGCGAAATCAGAACAGGAAAAAAGTCAAGAAGAAATAGCGGTGAGTTCAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34608</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>535301</contig_pos>
        <strand></strand>
        <context>agaatAAGAA[C/T]TTCCGATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAGTTTCAAAAAAAAACCTTCAGAAATTCAGGACTTTCAGAATAAGAA</left_flank>
        <right_flank>TTCCGATTTTTATCGATTTCATTGGCTCCACCATTTCTTCAAACCGACTT</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTCCAATTAAGGGGACAAACTTTTTGAATTTCCTGAAAATTATGATTGGTATAATTCCCATCTGATTCTAATAGTTGATATCAAAACTAAGTTTCACAGTTCCGATGCCTTCCAAACTTTTGAAAATACACAAGTAGTTTGCAATTTATGAAAACGGATAAAATTTAACAAGTTTTCAGACTTTCGAAATTTCAGAATTTTAGGTTTTCAGACTTTCAGAAACAGAAATTTCGAATTTCTGACACTCGCAATCTCGGAGTTTCCGAATATGAAAGTCTCAGGAATTTGAGATTCTCAGACTTCCAAAAACTCAGAATTTCAAGAACTCAACATTTTAGAAGTTCAGAGATTCAGAATCTCAAAAATTATGAGTCATAATCTCAGAATTTCAGAATTGCAGATTTTCAGATTTTCAGAATGTCAGGATTTCTGAATTTTAGGCTTTTCAGAAGTTTCAAAAAAAAACCTTCAGAAATTCAGGACTTTCAGAATAAGAACTTCCGATTTTTATCGATTTCATTGGCTCCACCATTTCTTCAAACCGACTTGAACCCACTATCTAGATCTCAGATCCTCTGGCGAACTACAGTAATCCACAAATCTCGTTACGGCTTCCGTCTCATCTCAAGAACTCGTTTCTTCCTTTTGCTCTTTCGATACTTCTTTTCCTTTTCACCCAAATGGGACCCATATCGAAGTGCCACTTTCCGGTTTTCTCAAATGTCGATATATTGCCTTTTCGAATGCGATGTCTTCTTCTTCTTCTTCTTCCACGGAAACAAACACTTCTCAATTCCTCATTCTTTTTGTCATTTGGTGTCAGATGAGGCAAGAAAAATAGCACAAGGATATAGAATAGAATAGAAGCAAGGGACTGTCATATAATTATCTGTGATACTCCTTCTCTTTTTCTCCATTGACCGTATGTTTTTTTGGGGCGAACAAAAGAAAACAAGAGAATATCGGATTTCCGGTGAAGAAGATCTTATCTCATGTAT</canonical>
            <polymorphic>GTTTCCAATTAAGGGGACAAACTTTTTGAATTTCCTGAAAATTATGATTGGTATAATTCCCATCTGATTCTAATAGTTGATATCAAAACTAAGTTTCACAGTTCCGATGCCTTCCAAACTTTTGAAAATACACAAGTAGTTTGCAATTTATGAAAACGGATAAAATTTAACAAGTTTTCAGACTTTCGAAATTTCAGAATTTTAGGTTTTCAGACTTTCAGAAACAGAAATTTCGAATTTCTGACACTCGCAATCTCGGAGTTTCCGAATATGAAAGTCTCAGGAATTTGAGATTCTCAGACTTCCAAAAACTCAGAATTTCAAGAACTCAACATTTTAGAAGTTCAGAGATTCAGAATCTCAAAAATTATGAGTCATAATCTCAGAATTTCAGAATTGCAGATTTTCAGATTTTCAGAATGTCAGGATTTCTGAATTTTAGGCTTTTCAGAAGTTTCAAAAAAAAACCTTCAGAAATTCAGGACTTTCAGAATAAGAAYTTCCGATTTTTATCGATTTCATTGGCTCCACCATTTCTTCAAACCGACTTGAACCCACTATCTAGATCTCAGATCCTCTGGCGAACTACAGTAATCCACAAATCTCGTTACGGCTTCCGTCTCATCTCAAGAACTCGTTTCTTCCTTTTGCTCTTTCGATACTTCTTTTCCTTTTCACCCAAATGGGACCCATATCGAAGTGCCACTTTCCGGTTTTCTCAAATGTCGATATATTGCCTTTTCGAATGCGATGTCTTCTTCTTCTTCTTCTTCCACGGAAACAAACACTTCTCAATTCCTCATTCTTTTTGTCATTTGGTGTCAGATGAGGCAAGAAAAATAGCACAAGGATATAGAATAGAATAGAAGCAAGGGACTGTCATATAATTATCTGTGATACTCCTTCTCTTTTTCTCCATTGACCGTATGTTTTTTTGGGGCGAACAAAAGAAAACAAGAGAATATCGGATTTCCGGTGAAGAAGATCTTATCTCATGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAAGTAGTTTGCAATTTATGA</pcr_primer_p1>
		<pcr_primer_p2>CAAGTCGGTTTGAAGAAATG</pcr_primer_p2>
		<pcr_amplicon_size>421</pcr_amplicon_size>
		<canonical_amplicon>CACAAGTAGTTTGCAATTTATGAAAACGGATAAAATTTAACAAGTTTTCAGACTTTCGAAATTTCAGAATTTTAGGTTTTCAGACTTTCAGAAACAGAAATTTCGAATTTCTGACACTCGCAATCTCGGAGTTTCCGAATATGAAAGTCTCAGGAATTTGAGATTCTCAGACTTCCAAAAACTCAGAATTTCAAGAACTCAACATTTTAGAAGTTCAGAGATTCAGAATCTCAAAAATTATGAGTCATAATCTCAGAATTTCAGAATTGCAGATTTTCAGATTTTCAGAATGTCAGGATTTCTGAATTTTAGGCTTTTCAGAAGTTTCAAAAAAAAACCTTCAGAAATTCAGGACTTTCAGAATAAGAACTTCCGATTTTTATCGATTTCATTGGCTCCACCATTTCTTCAAACCGACTTG</canonical_amplicon>
		<polymorphic_amplicon>CACAAGTAGTTTGCAATTTATGAAAACGGATAAAATTTAACAAGTTTTCAGACTTTCGAAATTTCAGAATTTTAGGTTTTCAGACTTTCAGAAACAGAAATTTCGAATTTCTGACACTCGCAATCTCGGAGTTTCCGAATATGAAAGTCTCAGGAATTTGAGATTCTCAGACTTCCAAAAACTCAGAATTTCAAGAACTCAACATTTTAGAAGTTCAGAGATTCAGAATCTCAAAAATTATGAGTCATAATCTCAGAATTTCAGAATTGCAGATTTTCAGATTTTCAGAATGTCAGGATTTCTGAATTTTAGGCTTTTCAGAAGTTTCAAAAAAAAACCTTCAGAAATTCAGGACTTTCAGAATAAGAAYTTCCGATTTTTATCGATTTCATTGGCTCCACCATTTCTTCAAACCGACTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34609</snp_id>
        <super_contig>c009201087.Contig1</super_contig>
        <contig_pos>659690</contig_pos>
        <strand>+</strand>
        <context>CATGGATGAT[A/G]ACTTGGCCGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATCGCCGCCGTTGACCACCGTACCGTTCAGATTCAGGGCATGGATGAT</left_flank>
        <right_flank>ACTTGGCCGCGGATGATGGACAACCACGACTTTACGTCTGGGGAACTAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCTGATTTTCAGCACCAAGTTTTATTTCAAAAATATAACTGGGCTCCTGATATTTGACATCAGGATTTGTATTGTAATGATTTATTTCTCTCTTAACAAGACGCTCTACGTATCGCGACTTATTTACAATCGCCTAACTTTCGGAGTGAATAGAACTTTATTATTTTTCAGTTGTTCATGTCTCGCCCAAACGATCAGCGTGAGCCACAATCGGAATCTACGGATTTATTTGCCGAGCCATCTTCACAAGGTTCCGGTATGAGATCTGAGCAAGCTAGTGGTGTAATGTCTCCAAGATCAGGTGAATTTTTTTTCGATTTTCGTATTTTCAAGTTTGTATTGCAGGGTCATCGGCTTCTGCTCTTCATTATGGATCAGAAATGGGATCGGTTTCCCAAATGTCATCACAATCCACAATGCGCCGAGGAGGGCCTCGCGGAGATCTCGGAATCGCCGCCGTTGACCACCGTACCGTTCAGATTCAGGGCATGGATGATGACTTGGCCGCGGATGATGGACAACCACGACTTTACGTCTGGGGAACTAGAATTTGTGTGGCTGATGTTCAAAAGTAAGAAAATGTGTATACTTTCTTTATTGTACAAATATCATATCAGATCATTCCGAGACTTCCTCACACTGTTCAAAATCAGTCATTTGGATGAAGACGAGAACATGATGGCTGGAAATGATGAAACTCTTCATCCAATTGACATCAGCCAACCGTACTATATGGAACGTCTCCTTGAATGCAATGACGCCGAAGTCACTCACATCAATTTGAATCTTGCCCATCTTCAATCTTTCTCGGAGCCTCTTTACCGCAAAGTTATTGCATATCCAGCGGTAACATAATAATTAATTTTAAAATCAAAAATCTTGATTTTCAGGATGTCATTCCATATCTCGACATCGTAGTCAATGAAGTCTTCGCCGAACGATTCAACCGTACTCTTTCTCAATCTATTGAACTCCGCCCATTCAACGCCGAGAAGACT</canonical>
            <polymorphic>CTTCTGATTTTCAGCACCAAGTTTTATTTCAAAAATATAACTGGGCTCCTGATATTTGACATCAGGATTTGTATTGTAATGATTTATTTCTCTCTTAACAAGACGCTCTACGTATCGCGACTTATTTACAATCGCCTAACTTTCGGAGTGAATAGAACTTTATTATTTTTCAGTTGTTCATGTCTCGCCCAAACGATCAGCGTGAGCCACAATCGGAATCTACGGATTTATTTGCCGAGCCATCTTCACAAGGTTCCGGTATGAGATCTGAGCAAGCTAGTGGTGTAATGTCTCCAAGATCAGGTGAATTTTTTTTCGATTTTCGTATTTTCAAGTTTGTATTGCAGGGTCATCGGCTTCTGCTCTTCATTATGGATCAGAAATGGGATCGGTTTCCCAAATGTCATCACAATCCACAATGCGCCGAGGAGGGCCTCGCGGAGATCTCGGAATCGCCGCCGTTGACCACCGTACCGTTCAGATTCAGGGCATGGATGATRACTTGGCCGCGGATGATGGACAACCACGACTTTACGTCTGGGGAACTAGAATTTGTGTGGCTGATGTTCAAAAGTAAGAAAATGTGTATACTTTCTTTATTGTACAAATATCATATCAGATCATTCCGAGACTTCCTCACACTGTTCAAAATCAGTCATTTGGATGAAGACGAGAACATGATGGCTGGAAATGATGAAACTCTTCATCCAATTGACATCAGCCAACCGTACTATATGGAACGTCTCCTTGAATGCAATGACGCCGAAGTCACTCACATCAATTTGAATCTTGCCCATCTTCAATCTTTCTCGGAGCCTCTTTACCGCAAAGTTATTGCATATCCAGCGGTAACATAATAATTAATTTTAAAATCAAAAATCTTGATTTTCAGGATGTCATTCCATATCTCGACATCGTAGTCAATGAAGTCTTCGCCGAACGATTCAACCGTACTCTTTCTCAATCTATTGAACTCCGCCCATTCAACGCCGAGAAGACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTCGTATTTTCAAGTTTGT</pcr_primer_p1>
		<pcr_primer_p2>ATCAGCCACACAAATTCTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATTTTCGTATTTTCAAGTTTGTATTGCAGGGTCATCGGCTTCTGCTCTTCATTATGGATCAGAAATGGGATCGGTTTCCCAAATGTCATCACAATCCACAATGCGCCGAGGAGGGCCTCGCGGAGATCTCGGAATCGCCGCCGTTGACCACCGTACCGTTCAGATTCAGGGCATGGATGATGACTTGGCCGCGGATGATGGACAACCACGACTTTACGTCTGGGGAACTAGAATTTGTGTGGCTGAT</canonical_amplicon>
		<polymorphic_amplicon>GATTTTCGTATTTTCAAGTTTGTATTGCAGGGTCATCGGCTTCTGCTCTTCATTATGGATCAGAAATGGGATCGGTTTCCCAAATGTCATCACAATCCACAATGCGCCGAGGAGGGCCTCGCGGAGATCTCGGAATCGCCGCCGTTGACCACCGTACCGTTCAGATTCAGGGCATGGATGATRACTTGGCCGCGGATGATGGACAACCACGACTTTACGTCTGGGGAACTAGAATTTGTGTGGCTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34610</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>89298</contig_pos>
        <strand>+</strand>
        <context>ACCAATAGGG[C/T]GCAGGGTCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTAGTAGAGCAGACAACAGATGAGAGCCCCCTTTGGATGACCAATAGGG</left_flank>
        <right_flank>GCAGGGTCAGCTGACTTTTTTGAAACTAGGCTAGAGCACAATTTGACTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTCTCGAAAAAGAGATCCGGTCATCTCCTGTATCATCTTTTTTCGCCTTTTTAAATACACGCCGAGAGAACCTATCATCAGCAAAACCAGTACCCACCCTCCATGTGTGTTTTCTTCCTCTTCTTCTTCGTCTTCTGAATCCCATTTCAAATTTTCTTCGCCCAAAAGACATGACATCAAGTTAACACAATTACTTTCTCTTCTCACCCGTGATTCTTTGACCCTCTTTTCTTCCGCAGTTTCTTTTTATGTGACACTAGCAGGAGTAGTAGTAAGATCCCATAAATAGAAAATTTGACGAGCATGTACACTTCATCTCCAGCCTGGACACTCCAGGACAGAAAGAGAAGAAGCATTGTTGGTTTTTGGGAAGGAAATGACGTAATTTGGGAAGAAGTGAGAGAAAAAACCAAAAGGGAACCAAAAAATTTGGTTGAAAGTGTCTGGAGTAGTAGAGCAGACAACAGATGAGAGCCCCCTTTGGATGACCAATAGGGCGCAGGGTCAGCTGACTTTTTTGAAACTAGGCTAGAGCACAATTTGACTGGAAAAAAAGTTATTAGAGTTTTTGGGTTTTCATTTTTTCAAACTTTCCAGTTAAAAGTTTATCCAGGAATAAATTCATGCAAAAATTCAGAAATTGAGAAGTTCTGGAATCCTGAAACTCAGAAACCCCAAAATCCAGAAATCTGAAGTTTCCGAAAACAGAATATCCAGAAATCCAAAAACCAGACATCGAGAAATCTAGAATTCCATTAGAACTGATAATCTACATAACTTGAAAATATTGGAAATTCTTAGAACCAAAAATCCAGAATTCCAAAATTTCAAGATTCCCAAGTCTGCAAATCTAGAAAATTGAAAATGCAGAATACAGAAAATCAGAAATTCCAAAGGAACCCAGAAATTAGTAATAAATTCATAAATTTAGAAATGACATCTATTTACATCTATTTTCAACATAAATTTAGAAACGGGAATCCAAAACTCGAATTTGC</canonical>
            <polymorphic>TCTTCTCGAAAAAGAGATCCGGTCATCTCCTGTATCATCTTTTTTCGCCTTTTTAAATACACGCCGAGAGAACCTATCATCAGCAAAACCAGTACCCACCCTCCATGTGTGTTTTCTTCCTCTTCTTCTTCGTCTTCTGAATCCCATTTCAAATTTTCTTCGCCCAAAAGACATGACATCAAGTTAACACAATTACTTTCTCTTCTCACCCGTGATTCTTTGACCCTCTTTTCTTCCGCAGTTTCTTTTTATGTGACACTAGCAGGAGTAGTAGTAAGATCCCATAAATAGAAAATTTGACGAGCATGTACACTTCATCTCCAGCCTGGACACTCCAGGACAGAAAGAGAAGAAGCATTGTTGGTTTTTGGGAAGGAAATGACGTAATTTGGGAAGAAGTGAGAGAAAAAACCAAAAGGGAACCAAAAAATTTGGTTGAAAGTGTCTGGAGTAGTAGAGCAGACAACAGATGAGAGCCCCCTTTGGATGACCAATAGGGYGCAGGGTCAGCTGACTTTTTTGAAACTAGGCTAGAGCACAATTTGACTGGAAAAAAAGTTATTAGAGTTTTTGGGTTTTCATTTTTTCAAACTTTCCAGTTAAAAGTTTATCCAGGAATAAATTCATGCAAAAATTCAGAAATTGAGAAGTTCTGGAATCCTGAAACTCAGAAACCCCAAAATCCAGAAATCTGAAGTTTCCGAAAACAGAATATCCAGAAATCCAAAAACCAGACATCGAGAAATCTAGAATTCCATTAGAACTGATAATCTACATAACTTGAAAATATTGGAAATTCTTAGAACCAAAAATCCAGAATTCCAAAATTTCAAGATTCCCAAGTCTGCAAATCTAGAAAATTGAAAATGCAGAATACAGAAAATCAGAAATTCCAAAGGAACCCAGAAATTAGTAATAAATTCATAAATTTAGAAATGACATCTATTTACATCTATTTTCAACATAAATTTAGAAACGGGAATCCAAAACTCGAATTTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAGTAGTAGAGCAGACAACAGA</pcr_primer_p1>
		<pcr_primer_p2>AACTTCAGATTTCTGGATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGAGTAGTAGAGCAGACAACAGATGAGAGCCCCCTTTGGATGACCAATAGGGCGCAGGGTCAGCTGACTTTTTTGAAACTAGGCTAGAGCACAATTTGACTGGAAAAAAAGTTATTAGAGTTTTTGGGTTTTCATTTTTTCAAACTTTCCAGTTAAAAGTTTATCCAGGAATAAATTCATGCAAAAATTCAGAAATTGAGAAGTTCTGGAATCCTGAAACTCAGAAACCCCAAAATCCAGAAATCTGAAGTT</canonical_amplicon>
		<polymorphic_amplicon>GGAGTAGTAGAGCAGACAACAGATGAGAGCCCCCTTTGGATGACCAATAGGGYGCAGGGTCAGCTGACTTTTTTGAAACTAGGCTAGAGCACAATTTGACTGGAAAAAAAGTTATTAGAGTTTTTGGGTTTTCATTTTTTCAAACTTTCCAGTTAAAAGTTTATCCAGGAATAAATTCATGCAAAAATTCAGAAATTGAGAAGTTCTGGAATCCTGAAACTCAGAAACCCCAAAATCCAGAAATCTGAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34611</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>147017</contig_pos>
        <strand></strand>
        <context>TCTCTTCTTC[T/C]ATCTTCCGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCAACACTGGCACTGTGCCAACAACTCTTTACTGTCTGTATCTCTTCTTC</left_flank>
        <right_flank>ATCTTCCGTCTCTCTCTTTTTTCTGTTTTCTCTCTTGTTAGCGCAGCAGT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGTTCAACTCGAAAGCATCTTAAAACGGACTCCATTCAGGTTGATTACATCTTTTCCTGGAATGATTTTCTTCTTCTCTTTTGATGTTCGATCCGCTTCCCGAATAGTTGGTGACCGCTCATTTTCACTGTAATATTGAGAAAAGAAAATTGCTAGTAATAAATGTGGGAAAGAGAAGTCAGTATTAAGGTAGAATTTTTGAAATTTGAATTGGCCTGTTATTTTTCAGTATCGCACAACCTCATTCTGCGTTTTGATTCACAAAAAAATTGAGTTCTGCAAATTTTGTTAATAAACAAATCTGGGTTTTGTTTATAGGTACATGAAGATTAAATTTCGGTTTCCTATAAACCAACTTTTTGCAAAACCAAGCTTTATCTCCCTACGCGTTGCGTATTTGCGTCGCGGCTTCCTTCTTGATTCTTATCTTGGCACGTCGCCAAACGGTCAACACTGGCACTGTGCCAACAACTCTTTACTGTCTGTATCTCTTCTTCTATCTTCCGTCTCTCTCTTTTTTCTGTTTTCTCTCTTGTTAGCGCAGCAGTGTTCGAGAAGAAACATGAAGAAGAAGAATACGAGGTTACGATACACACACGTGATAAAAAAGTTCGTCTTCGTTTCTCTCGAGTTTTCGAATTTGGTTTTGCTGGTAGATTGCAAGTATAATTGAAGTAACAATAGCTTTCAGTTTTTTTTTTCAAATTTCAGATAATATTTTTACCTGGCAAACTTAAGAAATTACCAGACAACTCAAACTTCTAACTGATGCTCGAGACAGCTGAACCTTTGGATTTGATCTACCAATCTTAGTTTTAGCGGGAGCCAATCAAATTTAAGAGGAGAGGAACTTTTTCCTTTTTTTGGCATTTTTCTTGTCCTCTTTGTTTTAGGAAAATATCGTTGGATTTAGCATCTAAAGAGACCAAACTAAGTAATATCTCCTGAATTTTTAAATTGAGCATTTTCAGACAACTTTGAATTTTTTGAATTCTCAT</canonical>
            <polymorphic>TTTGTTCAACTCGAAAGCATCTTAAAACGGACTCCATTCAGGTTGATTACATCTTTTCCTGGAATGATTTTCTTCTTCTCTTTTGATGTTCGATCCGCTTCCCGAATAGTTGGTGACCGCTCATTTTCACTGTAATATTGAGAAAAGAAAATTGCTAGTAATAAATGTGGGAAAGAGAAGTCAGTATTAAGGTAGAATTTTTGAAATTTGAATTGGCCTGTTATTTTTCAGTATCGCACAACCTCATTCTGCGTTTTGATTCACAAAAAAATTGAGTTCTGCAAATTTTGTTAATAAACAAATCTGGGTTTTGTTTATAGGTACATGAAGATTAAATTTCGGTTTCCTATAAACCAACTTTTTGCAAAACCAAGCTTTATCTCCCTACGCGTTGCGTATTTGCGTCGCGGCTTCCTTCTTGATTCTTATCTTGGCACGTCGCCAAACGGTCAACACTGGCACTGTGCCAACAACTCTTTACTGTCTGTATCTCTTCTTCYATCTTCCGTCTCTCTCTTTTTTCTGTTTTCTCTCTTGTTAGCGCAGCAGTGTTCGAGAAGAAACATGAAGAAGAAGAATACGAGGTTACGATACACACACGTGATAAAAAAGTTCGTCTTCGTTTCTCTCGAGTTTTCGAATTTGGTTTTGCTGGTAGATTGCAAGTATAATTGAAGTAACAATAGCTTTCAGTTTTTTTTTTCAAATTTCAGATAATATTTTTACCTGGCAAACTTAAGAAATTACCAGACAACTCAAACTTCTAACTGATGCTCGAGACAGCTGAACCTTTGGATTTGATCTACCAATCTTAGTTTTAGCGGGAGCCAATCAAATTTAAGAGGAGAGGAACTTTTTCCTTTTTTTGGCATTTTTCTTGTCCTCTTTGTTTTAGGAAAATATCGTTGGATTTAGCATCTAAAGAGACCAAACTAAGTAATATCTCCTGAATTTTTAAATTGAGCATTTTCAGACAACTTTGAATTTTTTGAATTCTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTCCTATAAACCAACTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TAACCTCGTATTCTTCTTCTTCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGTTTCCTATAAACCAACTTTTTGCAAAACCAAGCTTTATCTCCCTACGCGTTGCGTATTTGCGTCGCGGCTTCCTTCTTGATTCTTATCTTGGCACGTCGCCAAACGGTCAACACTGGCACTGTGCCAACAACTCTTTACTGTCTGTATCTCTTCTTCTATCTTCCGTCTCTCTCTTTTTTCTGTTTTCTCTCTTGTTAGCGCAGCAGTGTTCGAGAAGAAACATGAAGAAGAAGAATACGAGGTTA</canonical_amplicon>
		<polymorphic_amplicon>GGTTTCCTATAAACCAACTTTTTGCAAAACCAAGCTTTATCTCCCTACGCGTTGCGTATTTGCGTCGCGGCTTCCTTCTTGATTCTTATCTTGGCACGTCGCCAAACGGTCAACACTGGCACTGTGCCAACAACTCTTTACTGTCTGTATCTCTTCTTCYATCTTCCGTCTCTCTCTTTTTTCTGTTTTCTCTCTTGTTAGCGCAGCAGTGTTCGAGAAGAAACATGAAGAAGAAGAATACGAGGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34612</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>147313</contig_pos>
        <strand>+</strand>
        <context>GAACCTTTGG[A/T]TTTGATCTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCAGACAACTCAAACTTCTAACTGATGCTCGAGACAGCTGAACCTTTGG</left_flank>
        <right_flank>TTTGATCTACCAATCTTAGTTTTAGCGGGAGCCAATCAAATTTAAGAGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAAATCTGGGTTTTGTTTATAGGTACATGAAGATTAAATTTCGGTTTCCTATAAACCAACTTTTTGCAAAACCAAGCTTTATCTCCCTACGCGTTGCGTATTTGCGTCGCGGCTTCCTTCTTGATTCTTATCTTGGCACGTCGCCAAACGGTCAACACTGGCACTGTGCCAACAACTCTTTACTGTCTGTATCTCTTCTTCTATCTTCCGTCTCTCTCTTTTTTCTGTTTTCTCTCTTGTTAGCGCAGCAGTGTTCGAGAAGAAACATGAAGAAGAAGAATACGAGGTTACGATACACACACGTGATAAAAAAGTTCGTCTTCGTTTCTCTCGAGTTTTCGAATTTGGTTTTGCTGGTAGATTGCAAGTATAATTGAAGTAACAATAGCTTTCAGTTTTTTTTTTCAAATTTCAGATAATATTTTTACCTGGCAAACTTAAGAAATTACCAGACAACTCAAACTTCTAACTGATGCTCGAGACAGCTGAACCTTTGGATTTGATCTACCAATCTTAGTTTTAGCGGGAGCCAATCAAATTTAAGAGGAGAGGAACTTTTTCCTTTTTTTGGCATTTTTCTTGTCCTCTTTGTTTTAGGAAAATATCGTTGGATTTAGCATCTAAAGAGACCAAACTAAGTAATATCTCCTGAATTTTTAAATTGAGCATTTTCAGACAACTTTGAATTTTTTGAATTCTCATTTTTTCCTTTTTTCTAGAATCCGTTCTCCTTCTTCTGAATCCAAGACGATCCTTATCTTTCCATCAAACTATTTCGAACTTTCGGAATCTCCTGTTTCCAAGTCCTTCTCAAATTTGACTCTCTTCTTCATCATCTCATATTTTTCAATCCTTGGACATTCTCTCTGCTCCTCGTATCTCTCTTCTCCAAACACACATGCATTCTCATTCACACCACCAAATTAGAATGTGTCGCTCTTTTCTACTTTCTTTCTCTCCCTCTGACTCTCTTTTACCGTCTATAATCTCTTCTCATC</canonical>
            <polymorphic>AACAAATCTGGGTTTTGTTTATAGGTACATGAAGATTAAATTTCGGTTTCCTATAAACCAACTTTTTGCAAAACCAAGCTTTATCTCCCTACGCGTTGCGTATTTGCGTCGCGGCTTCCTTCTTGATTCTTATCTTGGCACGTCGCCAAACGGTCAACACTGGCACTGTGCCAACAACTCTTTACTGTCTGTATCTCTTCTTCTATCTTCCGTCTCTCTCTTTTTTCTGTTTTCTCTCTTGTTAGCGCAGCAGTGTTCGAGAAGAAACATGAAGAAGAAGAATACGAGGTTACGATACACACACGTGATAAAAAAGTTCGTCTTCGTTTCTCTCGAGTTTTCGAATTTGGTTTTGCTGGTAGATTGCAAGTATAATTGAAGTAACAATAGCTTTCAGTTTTTTTTTTCAAATTTCAGATAATATTTTTACCTGGCAAACTTAAGAAATTACCAGACAACTCAAACTTCTAACTGATGCTCGAGACAGCTGAACCTTTGGWTTTGATCTACCAATCTTAGTTTTAGCGGGAGCCAATCAAATTTAAGAGGAGAGGAACTTTTTCCTTTTTTTGGCATTTTTCTTGTCCTCTTTGTTTTAGGAAAATATCGTTGGATTTAGCATCTAAAGAGACCAAACTAAGTAATATCTCCTGAATTTTTAAATTGAGCATTTTCAGACAACTTTGAATTTTTTGAATTCTCATTTTTTCCTTTTTTCTAGAATCCGTTCTCCTTCTTCTGAATCCAAGACGATCCTTATCTTTCCATCAAACTATTTCGAACTTTCGGAATCTCCTGTTTCCAAGTCCTTCTCAAATTTGACTCTCTTCTTCATCATCTCATATTTTTCAATCCTTGGACATTCTCTCTGCTCCTCGTATCTCTCTTCTCCAAACACACATGCATTCTCATTCACACCACCAAATTAGAATGTGTCGCTCTTTTCTACTTTCTTTCTCTCCCTCTGACTCTCTTTTACCGTCTATAATCTCTTCTCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTCGTCTTCGTTTCTCTC</pcr_primer_p1>
		<pcr_primer_p2>GAAAAAGTTCCTCTCCTCTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGTTCGTCTTCGTTTCTCTCGAGTTTTCGAATTTGGTTTTGCTGGTAGATTGCAAGTATAATTGAAGTAACAATAGCTTTCAGTTTTTTTTTTCAAATTTCAGATAATATTTTTACCTGGCAAACTTAAGAAATTACCAGACAACTCAAACTTCTAACTGATGCTCGAGACAGCTGAACCTTTGGATTTGATCTACCAATCTTAGTTTTAGCGGGAGCCAATCAAATTTAAGAGGAGAGGAACTTTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAGTTCGTCTTCGTTTCTCTCGAGTTTTCGAATTTGGTTTTGCTGGTAGATTGCAAGTATAATTGAAGTAACAATAGCTTTCAGTTTTTTTTTTCAAATTTCAGATAATATTTTTACCTGGCAAACTTAAGAAATTACCAGACAACTCAAACTTCTAACTGATGCTCGAGACAGCTGAACCTTTGGWTTTGATCTACCAATCTTAGTTTTAGCGGGAGCCAATCAAATTTAAGAGGAGAGGAACTTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34613</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>147326</contig_pos>
        <strand>+</strand>
        <context>TGATCTACCA[C/T]TCTTAGTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACTTCTAACTGATGCTCGAGACAGCTGAACCTTTGGATTTGATCTACCA</left_flank>
        <right_flank>TCTTAGTTTTAGCGGGAGCCAATCAAATTTAAGAGGAGAGGAACTTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGTTTATAGGTACATGAAGATTAAATTTCGGTTTCCTATAAACCAACTTTTTGCAAAACCAAGCTTTATCTCCCTACGCGTTGCGTATTTGCGTCGCGGCTTCCTTCTTGATTCTTATCTTGGCACGTCGCCAAACGGTCAACACTGGCACTGTGCCAACAACTCTTTACTGTCTGTATCTCTTCTTCTATCTTCCGTCTCTCTCTTTTTTCTGTTTTCTCTCTTGTTAGCGCAGCAGTGTTCGAGAAGAAACATGAAGAAGAAGAATACGAGGTTACGATACACACACGTGATAAAAAAGTTCGTCTTCGTTTCTCTCGAGTTTTCGAATTTGGTTTTGCTGGTAGATTGCAAGTATAATTGAAGTAACAATAGCTTTCAGTTTTTTTTTTCAAATTTCAGATAATATTTTTACCTGGCAAACTTAAGAAATTACCAGACAACTCAAACTTCTAACTGATGCTCGAGACAGCTGAACCTTTGGATTTGATCTACCAATCTTAGTTTTAGCGGGAGCCAATCAAATTTAAGAGGAGAGGAACTTTTTCCTTTTTTTGGCATTTTTCTTGTCCTCTTTGTTTTAGGAAAATATCGTTGGATTTAGCATCTAAAGAGACCAAACTAAGTAATATCTCCTGAATTTTTAAATTGAGCATTTTCAGACAACTTTGAATTTTTTGAATTCTCATTTTTTCCTTTTTTCTAGAATCCGTTCTCCTTCTTCTGAATCCAAGACGATCCTTATCTTTCCATCAAACTATTTCGAACTTTCGGAATCTCCTGTTTCCAAGTCCTTCTCAAATTTGACTCTCTTCTTCATCATCTCATATTTTTCAATCCTTGGACATTCTCTCTGCTCCTCGTATCTCTCTTCTCCAAACACACATGCATTCTCATTCACACCACCAAATTAGAATGTGTCGCTCTTTTCTACTTTCTTTCTCTCCCTCTGACTCTCTTTTACCGTCTATAATCTCTTCTCATCGGGGCTCGAAAAC</canonical>
            <polymorphic>TTTGTTTATAGGTACATGAAGATTAAATTTCGGTTTCCTATAAACCAACTTTTTGCAAAACCAAGCTTTATCTCCCTACGCGTTGCGTATTTGCGTCGCGGCTTCCTTCTTGATTCTTATCTTGGCACGTCGCCAAACGGTCAACACTGGCACTGTGCCAACAACTCTTTACTGTCTGTATCTCTTCTTCTATCTTCCGTCTCTCTCTTTTTTCTGTTTTCTCTCTTGTTAGCGCAGCAGTGTTCGAGAAGAAACATGAAGAAGAAGAATACGAGGTTACGATACACACACGTGATAAAAAAGTTCGTCTTCGTTTCTCTCGAGTTTTCGAATTTGGTTTTGCTGGTAGATTGCAAGTATAATTGAAGTAACAATAGCTTTCAGTTTTTTTTTTCAAATTTCAGATAATATTTTTACCTGGCAAACTTAAGAAATTACCAGACAACTCAAACTTCTAACTGATGCTCGAGACAGCTGAACCTTTGGATTTGATCTACCAYTCTTAGTTTTAGCGGGAGCCAATCAAATTTAAGAGGAGAGGAACTTTTTCCTTTTTTTGGCATTTTTCTTGTCCTCTTTGTTTTAGGAAAATATCGTTGGATTTAGCATCTAAAGAGACCAAACTAAGTAATATCTCCTGAATTTTTAAATTGAGCATTTTCAGACAACTTTGAATTTTTTGAATTCTCATTTTTTCCTTTTTTCTAGAATCCGTTCTCCTTCTTCTGAATCCAAGACGATCCTTATCTTTCCATCAAACTATTTCGAACTTTCGGAATCTCCTGTTTCCAAGTCCTTCTCAAATTTGACTCTCTTCTTCATCATCTCATATTTTTCAATCCTTGGACATTCTCTCTGCTCCTCGTATCTCTCTTCTCCAAACACACATGCATTCTCATTCACACCACCAAATTAGAATGTGTCGCTCTTTTCTACTTTCTTTCTCTCCCTCTGACTCTCTTTTACCGTCTATAATCTCTTCTCATCGGGGCTCGAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCAAACTTAAGAAATTACCAG</pcr_primer_p1>
		<pcr_primer_p2>AAGTTGTCTGAAAATGCTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGCAAACTTAAGAAATTACCAGACAACTCAAACTTCTAACTGATGCTCGAGACAGCTGAACCTTTGGATTTGATCTACCAATCTTAGTTTTAGCGGGAGCCAATCAAATTTAAGAGGAGAGGAACTTTTTCCTTTTTTTGGCATTTTTCTTGTCCTCTTTGTTTTAGGAAAATATCGTTGGATTTAGCATCTAAAGAGACCAAACTAAGTAATATCTCCTGAATTTTTAAATTGAGCATTTTCAGACAACTT</canonical_amplicon>
		<polymorphic_amplicon>GGCAAACTTAAGAAATTACCAGACAACTCAAACTTCTAACTGATGCTCGAGACAGCTGAACCTTTGGATTTGATCTACCAYTCTTAGTTTTAGCGGGAGCCAATCAAATTTAAGAGGAGAGGAACTTTTTCCTTTTTTTGGCATTTTTCTTGTCCTCTTTGTTTTAGGAAAATATCGTTGGATTTAGCATCTAAAGAGACCAAACTAAGTAATATCTCCTGAATTTTTAAATTGAGCATTTTCAGACAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34614</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>147420</contig_pos>
        <strand>+</strand>
        <context>TAGGAAAATA[C/T]CGTTGGATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTTTCCTTTTTTTGGCATTTTTCTTGTCCTCTTTGTTTTAGGAAAATA</left_flank>
        <right_flank>CGTTGGATTTAGCATCTAAAGAGACCAAACTAAGTAATATCTCCTGAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCGCGGCTTCCTTCTTGATTCTTATCTTGGCACGTCGCCAAACGGTCAACACTGGCACTGTGCCAACAACTCTTTACTGTCTGTATCTCTTCTTCTATCTTCCGTCTCTCTCTTTTTTCTGTTTTCTCTCTTGTTAGCGCAGCAGTGTTCGAGAAGAAACATGAAGAAGAAGAATACGAGGTTACGATACACACACGTGATAAAAAAGTTCGTCTTCGTTTCTCTCGAGTTTTCGAATTTGGTTTTGCTGGTAGATTGCAAGTATAATTGAAGTAACAATAGCTTTCAGTTTTTTTTTTCAAATTTCAGATAATATTTTTACCTGGCAAACTTAAGAAATTACCAGACAACTCAAACTTCTAACTGATGCTCGAGACAGCTGAACCTTTGGATTTGATCTACCAATCTTAGTTTTAGCGGGAGCCAATCAAATTTAAGAGGAGAGGAACTTTTTCCTTTTTTTGGCATTTTTCTTGTCCTCTTTGTTTTAGGAAAATATCGTTGGATTTAGCATCTAAAGAGACCAAACTAAGTAATATCTCCTGAATTTTTAAATTGAGCATTTTCAGACAACTTTGAATTTTTTGAATTCTCATTTTTTCCTTTTTTCTAGAATCCGTTCTCCTTCTTCTGAATCCAAGACGATCCTTATCTTTCCATCAAACTATTTCGAACTTTCGGAATCTCCTGTTTCCAAGTCCTTCTCAAATTTGACTCTCTTCTTCATCATCTCATATTTTTCAATCCTTGGACATTCTCTCTGCTCCTCGTATCTCTCTTCTCCAAACACACATGCATTCTCATTCACACCACCAAATTAGAATGTGTCGCTCTTTTCTACTTTCTTTCTCTCCCTCTGACTCTCTTTTACCGTCTATAATCTCTTCTCATCGGGGCTCGAAAACTCATCTCTCCCTCTTTCTCTTCCTTCTTCTTCTTCCTCTTCTCTCTCTATTCCTTTTTCCTGTCCTCCCGTTTCGGTGCCGTTTGTCCTCTTCT</canonical>
            <polymorphic>GTCGCGGCTTCCTTCTTGATTCTTATCTTGGCACGTCGCCAAACGGTCAACACTGGCACTGTGCCAACAACTCTTTACTGTCTGTATCTCTTCTTCTATCTTCCGTCTCTCTCTTTTTTCTGTTTTCTCTCTTGTTAGCGCAGCAGTGTTCGAGAAGAAACATGAAGAAGAAGAATACGAGGTTACGATACACACACGTGATAAAAAAGTTCGTCTTCGTTTCTCTCGAGTTTTCGAATTTGGTTTTGCTGGTAGATTGCAAGTATAATTGAAGTAACAATAGCTTTCAGTTTTTTTTTTCAAATTTCAGATAATATTTTTACCTGGCAAACTTAAGAAATTACCAGACAACTCAAACTTCTAACTGATGCTCGAGACAGCTGAACCTTTGGATTTGATCTACCAATCTTAGTTTTAGCGGGAGCCAATCAAATTTAAGAGGAGAGGAACTTTTTCCTTTTTTTGGCATTTTTCTTGTCCTCTTTGTTTTAGGAAAATAYCGTTGGATTTAGCATCTAAAGAGACCAAACTAAGTAATATCTCCTGAATTTTTAAATTGAGCATTTTCAGACAACTTTGAATTTTTTGAATTCTCATTTTTTCCTTTTTTCTAGAATCCGTTCTCCTTCTTCTGAATCCAAGACGATCCTTATCTTTCCATCAAACTATTTCGAACTTTCGGAATCTCCTGTTTCCAAGTCCTTCTCAAATTTGACTCTCTTCTTCATCATCTCATATTTTTCAATCCTTGGACATTCTCTCTGCTCCTCGTATCTCTCTTCTCCAAACACACATGCATTCTCATTCACACCACCAAATTAGAATGTGTCGCTCTTTTCTACTTTCTTTCTCTCCCTCTGACTCTCTTTTACCGTCTATAATCTCTTCTCATCGGGGCTCGAAAACTCATCTCTCCCTCTTTCTCTTCCTTCTTCTTCTTCCTCTTCTCTCTCTATTCCTTTTTCCTGTCCTCCCGTTTCGGTGCCGTTTGTCCTCTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAAATTTAAGAGGAGAGGAAC</pcr_primer_p1>
		<pcr_primer_p2>CGAAATAGTTTGATGGAAAGATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATCAAATTTAAGAGGAGAGGAACTTTTTCCTTTTTTTGGCATTTTTCTTGTCCTCTTTGTTTTAGGAAAATATCGTTGGATTTAGCATCTAAAGAGACCAAACTAAGTAATATCTCCTGAATTTTTAAATTGAGCATTTTCAGACAACTTTGAATTTTTTGAATTCTCATTTTTTCCTTTTTTCTAGAATCCGTTCTCCTTCTTCTGAATCCAAGACGATCCTTATCTTTCCATCAAACTATTTCG</canonical_amplicon>
		<polymorphic_amplicon>ATCAAATTTAAGAGGAGAGGAACTTTTTCCTTTTTTTGGCATTTTTCTTGTCCTCTTTGTTTTAGGAAAATAYCGTTGGATTTAGCATCTAAAGAGACCAAACTAAGTAATATCTCCTGAATTTTTAAATTGAGCATTTTCAGACAACTTTGAATTTTTTGAATTCTCATTTTTTCCTTTTTTCTAGAATCCGTTCTCCTTCTTCTGAATCCAAGACGATCCTTATCTTTCCATCAAACTATTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34615</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>147502</contig_pos>
        <strand>+</strand>
        <context>CAACTTTGAA[C/T]TTTTTGAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGTAATATCTCCTGAATTTTTAAATTGAGCATTTTCAGACAACTTTGAA</left_flank>
        <right_flank>TTTTTGAATTCTCATTTTTTCCTTTTTTCTAGAATCCGTTCTCCTTCTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTATCTCTTCTTCTATCTTCCGTCTCTCTCTTTTTTCTGTTTTCTCTCTTGTTAGCGCAGCAGTGTTCGAGAAGAAACATGAAGAAGAAGAATACGAGGTTACGATACACACACGTGATAAAAAAGTTCGTCTTCGTTTCTCTCGAGTTTTCGAATTTGGTTTTGCTGGTAGATTGCAAGTATAATTGAAGTAACAATAGCTTTCAGTTTTTTTTTTCAAATTTCAGATAATATTTTTACCTGGCAAACTTAAGAAATTACCAGACAACTCAAACTTCTAACTGATGCTCGAGACAGCTGAACCTTTGGATTTGATCTACCAATCTTAGTTTTAGCGGGAGCCAATCAAATTTAAGAGGAGAGGAACTTTTTCCTTTTTTTGGCATTTTTCTTGTCCTCTTTGTTTTAGGAAAATATCGTTGGATTTAGCATCTAAAGAGACCAAACTAAGTAATATCTCCTGAATTTTTAAATTGAGCATTTTCAGACAACTTTGAATTTTTTGAATTCTCATTTTTTCCTTTTTTCTAGAATCCGTTCTCCTTCTTCTGAATCCAAGACGATCCTTATCTTTCCATCAAACTATTTCGAACTTTCGGAATCTCCTGTTTCCAAGTCCTTCTCAAATTTGACTCTCTTCTTCATCATCTCATATTTTTCAATCCTTGGACATTCTCTCTGCTCCTCGTATCTCTCTTCTCCAAACACACATGCATTCTCATTCACACCACCAAATTAGAATGTGTCGCTCTTTTCTACTTTCTTTCTCTCCCTCTGACTCTCTTTTACCGTCTATAATCTCTTCTCATCGGGGCTCGAAAACTCATCTCTCCCTCTTTCTCTTCCTTCTTCTTCTTCCTCTTCTCTCTCTATTCCTTTTTCCTGTCCTCCCGTTTCGGTGCCGTTTGTCCTCTTCTTCTTCTTCTTCCGTACCTCCTATCCACACCATCTTCTGTCTTCTCACTCTCTCATTATTCGTTTTCCTCATTTCGTCCTTTT</canonical>
            <polymorphic>TGTATCTCTTCTTCTATCTTCCGTCTCTCTCTTTTTTCTGTTTTCTCTCTTGTTAGCGCAGCAGTGTTCGAGAAGAAACATGAAGAAGAAGAATACGAGGTTACGATACACACACGTGATAAAAAAGTTCGTCTTCGTTTCTCTCGAGTTTTCGAATTTGGTTTTGCTGGTAGATTGCAAGTATAATTGAAGTAACAATAGCTTTCAGTTTTTTTTTTCAAATTTCAGATAATATTTTTACCTGGCAAACTTAAGAAATTACCAGACAACTCAAACTTCTAACTGATGCTCGAGACAGCTGAACCTTTGGATTTGATCTACCAATCTTAGTTTTAGCGGGAGCCAATCAAATTTAAGAGGAGAGGAACTTTTTCCTTTTTTTGGCATTTTTCTTGTCCTCTTTGTTTTAGGAAAATATCGTTGGATTTAGCATCTAAAGAGACCAAACTAAGTAATATCTCCTGAATTTTTAAATTGAGCATTTTCAGACAACTTTGAAYTTTTTGAATTCTCATTTTTTCCTTTTTTCTAGAATCCGTTCTCCTTCTTCTGAATCCAAGACGATCCTTATCTTTCCATCAAACTATTTCGAACTTTCGGAATCTCCTGTTTCCAAGTCCTTCTCAAATTTGACTCTCTTCTTCATCATCTCATATTTTTCAATCCTTGGACATTCTCTCTGCTCCTCGTATCTCTCTTCTCCAAACACACATGCATTCTCATTCACACCACCAAATTAGAATGTGTCGCTCTTTTCTACTTTCTTTCTCTCCCTCTGACTCTCTTTTACCGTCTATAATCTCTTCTCATCGGGGCTCGAAAACTCATCTCTCCCTCTTTCTCTTCCTTCTTCTTCTTCCTCTTCTCTCTCTATTCCTTTTTCCTGTCCTCCCGTTTCGGTGCCGTTTGTCCTCTTCTTCTTCTTCTTCCGTACCTCCTATCCACACCATCTTCTGTCTTCTCACTCTCTCATTATTCGTTTTCCTCATTTCGTCCTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>374 154 129 120 115 66 33 9</canonical_bands>
                <polymorphic_bands>374 154 129 120 115 66 42</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>266 154 120 115 108 93 36 36 30 25 9 8</canonical_bands>
                <polymorphic_bands>266 154 120 115 108 93 36 36 34 30 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGATTTAGCATCTAAAGAGAC</pcr_primer_p1>
		<pcr_primer_p2>CAAGGATTGAAAAATATGAGATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGGATTTAGCATCTAAAGAGACCAAACTAAGTAATATCTCCTGAATTTTTAAATTGAGCATTTTCAGACAACTTTGAATTTTTTGAATTCTCATTTTTTCCTTTTTTCTAGAATCCGTTCTCCTTCTTCTGAATCCAAGACGATCCTTATCTTTCCATCAAACTATTTCGAACTTTCGGAATCTCCTGTTTCCAAGTCCTTCTCAAATTTGACTCTCTTCTTCATCATCTCATATTTTTCAATCCTTG</canonical_amplicon>
		<polymorphic_amplicon>TTGGATTTAGCATCTAAAGAGACCAAACTAAGTAATATCTCCTGAATTTTTAAATTGAGCATTTTCAGACAACTTTGAAYTTTTTGAATTCTCATTTTTTCCTTTTTTCTAGAATCCGTTCTCCTTCTTCTGAATCCAAGACGATCCTTATCTTTCCATCAAACTATTTCGAACTTTCGGAATCTCCTGTTTCCAAGTCCTTCTCAAATTTGACTCTCTTCTTCATCATCTCATATTTTTCAATCCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34616</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>147517</contig_pos>
        <strand>+</strand>
        <context>TGAATTCTCA[C/T]TTTTTCCTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTTTAAATTGAGCATTTTCAGACAACTTTGAATTTTTTGAATTCTCA</left_flank>
        <right_flank>TTTTTCCTTTTTTCTAGAATCCGTTCTCCTTCTTCTGAATCCAAGACGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTTCCGTCTCTCTCTTTTTTCTGTTTTCTCTCTTGTTAGCGCAGCAGTGTTCGAGAAGAAACATGAAGAAGAAGAATACGAGGTTACGATACACACACGTGATAAAAAAGTTCGTCTTCGTTTCTCTCGAGTTTTCGAATTTGGTTTTGCTGGTAGATTGCAAGTATAATTGAAGTAACAATAGCTTTCAGTTTTTTTTTTCAAATTTCAGATAATATTTTTACCTGGCAAACTTAAGAAATTACCAGACAACTCAAACTTCTAACTGATGCTCGAGACAGCTGAACCTTTGGATTTGATCTACCAATCTTAGTTTTAGCGGGAGCCAATCAAATTTAAGAGGAGAGGAACTTTTTCCTTTTTTTGGCATTTTTCTTGTCCTCTTTGTTTTAGGAAAATATCGTTGGATTTAGCATCTAAAGAGACCAAACTAAGTAATATCTCCTGAATTTTTAAATTGAGCATTTTCAGACAACTTTGAATTTTTTGAATTCTCATTTTTTCCTTTTTTCTAGAATCCGTTCTCCTTCTTCTGAATCCAAGACGATCCTTATCTTTCCATCAAACTATTTCGAACTTTCGGAATCTCCTGTTTCCAAGTCCTTCTCAAATTTGACTCTCTTCTTCATCATCTCATATTTTTCAATCCTTGGACATTCTCTCTGCTCCTCGTATCTCTCTTCTCCAAACACACATGCATTCTCATTCACACCACCAAATTAGAATGTGTCGCTCTTTTCTACTTTCTTTCTCTCCCTCTGACTCTCTTTTACCGTCTATAATCTCTTCTCATCGGGGCTCGAAAACTCATCTCTCCCTCTTTCTCTTCCTTCTTCTTCTTCCTCTTCTCTCTCTATTCCTTTTTCCTGTCCTCCCGTTTCGGTGCCGTTTGTCCTCTTCTTCTTCTTCTTCCGTACCTCCTATCCACACCATCTTCTGTCTTCTCACTCTCTCATTATTCGTTTTCCTCATTTCGTCCTTTTCCTAATATCACCTAT</canonical>
            <polymorphic>ATCTTCCGTCTCTCTCTTTTTTCTGTTTTCTCTCTTGTTAGCGCAGCAGTGTTCGAGAAGAAACATGAAGAAGAAGAATACGAGGTTACGATACACACACGTGATAAAAAAGTTCGTCTTCGTTTCTCTCGAGTTTTCGAATTTGGTTTTGCTGGTAGATTGCAAGTATAATTGAAGTAACAATAGCTTTCAGTTTTTTTTTTCAAATTTCAGATAATATTTTTACCTGGCAAACTTAAGAAATTACCAGACAACTCAAACTTCTAACTGATGCTCGAGACAGCTGAACCTTTGGATTTGATCTACCAATCTTAGTTTTAGCGGGAGCCAATCAAATTTAAGAGGAGAGGAACTTTTTCCTTTTTTTGGCATTTTTCTTGTCCTCTTTGTTTTAGGAAAATATCGTTGGATTTAGCATCTAAAGAGACCAAACTAAGTAATATCTCCTGAATTTTTAAATTGAGCATTTTCAGACAACTTTGAATTTTTTGAATTCTCAYTTTTTCCTTTTTTCTAGAATCCGTTCTCCTTCTTCTGAATCCAAGACGATCCTTATCTTTCCATCAAACTATTTCGAACTTTCGGAATCTCCTGTTTCCAAGTCCTTCTCAAATTTGACTCTCTTCTTCATCATCTCATATTTTTCAATCCTTGGACATTCTCTCTGCTCCTCGTATCTCTCTTCTCCAAACACACATGCATTCTCATTCACACCACCAAATTAGAATGTGTCGCTCTTTTCTACTTTCTTTCTCTCCCTCTGACTCTCTTTTACCGTCTATAATCTCTTCTCATCGGGGCTCGAAAACTCATCTCTCCCTCTTTCTCTTCCTTCTTCTTCTTCCTCTTCTCTCTCTATTCCTTTTTCCTGTCCTCCCGTTTCGGTGCCGTTTGTCCTCTTCTTCTTCTTCTTCCGTACCTCCTATCCACACCATCTTCTGTCTTCTCACTCTCTCATTATTCGTTTTCCTCATTTCGTCCTTTTCCTAATATCACCTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGATTTAGCATCTAAAGAGAC</pcr_primer_p1>
		<pcr_primer_p2>CAAGGATTGAAAAATATGAGATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGGATTTAGCATCTAAAGAGACCAAACTAAGTAATATCTCCTGAATTTTTAAATTGAGCATTTTCAGACAACTTTGAATTTTTTGAATTCTCATTTTTTCCTTTTTTCTAGAATCCGTTCTCCTTCTTCTGAATCCAAGACGATCCTTATCTTTCCATCAAACTATTTCGAACTTTCGGAATCTCCTGTTTCCAAGTCCTTCTCAAATTTGACTCTCTTCTTCATCATCTCATATTTTTCAATCCTTG</canonical_amplicon>
		<polymorphic_amplicon>TTGGATTTAGCATCTAAAGAGACCAAACTAAGTAATATCTCCTGAATTTTTAAATTGAGCATTTTCAGACAACTTTGAATTTTTTGAATTCTCAYTTTTTCCTTTTTTCTAGAATCCGTTCTCCTTCTTCTGAATCCAAGACGATCCTTATCTTTCCATCAAACTATTTCGAACTTTCGGAATCTCCTGTTTCCAAGTCCTTCTCAAATTTGACTCTCTTCTTCATCATCTCATATTTTTCAATCCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34617</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>217648</contig_pos>
        <strand>+</strand>
        <context>ATTTCCTATT[C/T]TGATGATGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGCACTCGAGTGTGGTTCCCATCTATGGACGACGTTCTCATTTCCTATT</left_flank>
        <right_flank>TGATGATGATGCGGTTGACAATAACTACGCCCACACATTCAATGGATTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAGTGTGGTCATCCAACAAACTCTTGCATGGAGAAACAAGATCGTTATGGTACTTTCGCAATTTCCAGCCTCCCCAATCAGCCCAACTGGAAACCACTTTGATGTGCTCCGACGAGTAATCACCGCAGTCCACGGAGATCTAATGATTGTTGACAAGTCTGAAGTCGTGGGAGTTATCAAGGAACTTCTATACGCATTCATTGGCGGTCAGAACAGTTTTGTTCAGTACTACAACAGTGTCAGCAAAACTATCCCAATTTTCTCCGATTCTGCTACTCAAACCACCTTCGCCCTGATCACAGTTGAGAATGGATCTATCCCGAACGTTCAAGATAAGAATGGAAAGATGTTGGCTCCAGATGTTTCTGGAAAACGATTTGCGCTCTTCCGCGTCTATCAAAGTGTCACTGACTCCATCACAATTTCTGGAGATACTATCCCGGTTCACAGCACTCGAGTGTGGTTCCCATCTATGGACGACGTTCTCATTTCCTATTCTGATGATGATGCGGTTGACAATAACTACGCCCACACATTCAATGGATTCAGACAACGACCAGCAGTGTATTCCTCTTTTGCCACCACAACAGGCTTGACTGTTACAAGACTCAACTCTTACAACTCATCTATCATTCTCGGAGCAGTTGCTGATGCTGCAAAGTCCGCTTCTTGTGTCTTCAATTACCAACTCACAGCAGAATCATCATGCATTCCAGGACCATTCGTTCATAATGTTGTCGTCGCGGCCACTGACAGAAACAAGTATCGTGCCGTGCCAGGATACTGTTTCACTCCAGATACCCACTCGGCTCCTCTCTGGTCATGCATCAATAACGGTACCCGTAGCGGTGTGAGCAGTTGTAATTGCGCTACCAACTGGGATGGTCTTCATTGTGAAGTTCCGAAGTGTTTGAACGGCGGATACCCAGACAAGTTCCCCAACGGAGGAGGCCATGGAAACTGCATCTGTCCATTTGGAGTCACTGGAAGCTTCTGCG</canonical>
            <polymorphic>GAGAGTGTGGTCATCCAACAAACTCTTGCATGGAGAAACAAGATCGTTATGGTACTTTCGCAATTTCCAGCCTCCCCAATCAGCCCAACTGGAAACCACTTTGATGTGCTCCGACGAGTAATCACCGCAGTCCACGGAGATCTAATGATTGTTGACAAGTCTGAAGTCGTGGGAGTTATCAAGGAACTTCTATACGCATTCATTGGCGGTCAGAACAGTTTTGTTCAGTACTACAACAGTGTCAGCAAAACTATCCCAATTTTCTCCGATTCTGCTACTCAAACCACCTTCGCCCTGATCACAGTTGAGAATGGATCTATCCCGAACGTTCAAGATAAGAATGGAAAGATGTTGGCTCCAGATGTTTCTGGAAAACGATTTGCGCTCTTCCGCGTCTATCAAAGTGTCACTGACTCCATCACAATTTCTGGAGATACTATCCCGGTTCACAGCACTCGAGTGTGGTTCCCATCTATGGACGACGTTCTCATTTCCTATTYTGATGATGATGCGGTTGACAATAACTACGCCCACACATTCAATGGATTCAGACAACGACCAGCAGTGTATTCCTCTTTTGCCACCACAACAGGCTTGACTGTTACAAGACTCAACTCTTACAACTCATCTATCATTCTCGGAGCAGTTGCTGATGCTGCAAAGTCCGCTTCTTGTGTCTTCAATTACCAACTCACAGCAGAATCATCATGCATTCCAGGACCATTCGTTCATAATGTTGTCGTCGCGGCCACTGACAGAAACAAGTATCGTGCCGTGCCAGGATACTGTTTCACTCCAGATACCCACTCGGCTCCTCTCTGGTCATGCATCAATAACGGTACCCGTAGCGGTGTGAGCAGTTGTAATTGCGCTACCAACTGGGATGGTCTTCATTGTGAAGTTCCGAAGTGTTTGAACGGCGGATACCCAGACAAGTTCCCCAACGGAGGAGGCCATGGAAACTGCATCTGTCCATTTGGAGTCACTGGAAGCTTCTGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>265 234 112 95 90 55 50 50 49</canonical_bands>
                <polymorphic_bands>283 265 112 95 90 55 50 50</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAAGATAAGAATGGAAAGATG</pcr_primer_p1>
		<pcr_primer_p2>AAAGAGGAATACACTGCTGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCAAGATAAGAATGGAAAGATGTTGGCTCCAGATGTTTCTGGAAAACGATTTGCGCTCTTCCGCGTCTATCAAAGTGTCACTGACTCCATCACAATTTCTGGAGATACTATCCCGGTTCACAGCACTCGAGTGTGGTTCCCATCTATGGACGACGTTCTCATTTCCTATTCTGATGATGATGCGGTTGACAATAACTACGCCCACACATTCAATGGATTCAGACAACGACCAGCAGTGTATTCCTCTTT</canonical_amplicon>
		<polymorphic_amplicon>TTCAAGATAAGAATGGAAAGATGTTGGCTCCAGATGTTTCTGGAAAACGATTTGCGCTCTTCCGCGTCTATCAAAGTGTCACTGACTCCATCACAATTTCTGGAGATACTATCCCGGTTCACAGCACTCGAGTGTGGTTCCCATCTATGGACGACGTTCTCATTTCCTATTYTGATGATGATGCGGTTGACAATAACTACGCCCACACATTCAATGGATTCAGACAACGACCAGCAGTGTATTCCTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34618</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>218200</contig_pos>
        <strand>+</strand>
        <context>TATTGTTAGT[A/G]TCCTGCCCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTAGTGAGTTGGTCTTACAAAATAAAAATTAATTTGAATATTGTTAGT</left_flank>
        <right_flank>TCCTGCCCAACGACATCTCCTGACACTTTTCAATCATACAACAGATCTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACGACCAGCAGTGTATTCCTCTTTTGCCACCACAACAGGCTTGACTGTTACAAGACTCAACTCTTACAACTCATCTATCATTCTCGGAGCAGTTGCTGATGCTGCAAAGTCCGCTTCTTGTGTCTTCAATTACCAACTCACAGCAGAATCATCATGCATTCCAGGACCATTCGTTCATAATGTTGTCGTCGCGGCCACTGACAGAAACAAGTATCGTGCCGTGCCAGGATACTGTTTCACTCCAGATACCCACTCGGCTCCTCTCTGGTCATGCATCAATAACGGTACCCGTAGCGGTGTGAGCAGTTGTAATTGCGCTACCAACTGGGATGGTCTTCATTGTGAAGTTCCGAAGTGTTTGAACGGCGGATACCCAGACAAGTTCCCCAACGGAGGAGGCCATGGAAACTGCATCTGTCCATTTGGAGTCACTGGAAGCTTCTGCGAAATTAGTGAGTTGGTCTTACAAAATAAAAATTAATTTGAATATTGTTAGTGTCCTGCCCAACGACATCTCCTGACACTTTTCAATCATACAACAGATCTTTTGCTCTCGTTGTTCAAAATTCGCTCTCTGCCAATCAAGCGATGCTCAGACTTAACGATGGACTCACAGCTATGCTCAACAAAGGACTATCCAATGATTTTGAAGATTACATTCTGACCACGTACAAGACCAGAGTTATTGGAGGACTACCAGTTCCGGATGTAACTTCTACCAAATTCAGCTCAGCGTCTGCTTTCGTGAATGCCACTACTGATGATGGAATCATGTGGTCATACTCTCCAAATGGTACCCAACCAGGATTGTTTGCCCTTGAGACCACACTGAGATCGATGGATTACGACAAGTCGTCTATTTTCTTTTTCACCGATTCCGAATCTTCGATGGTTGAGGGAACTTTGAACTTTACTGATATTGTGTGAGAACTTCAAAATCTGTGGTTATAGTTTTCAATGTACGAATTACAGCCAACAAGCAGTCGAACGCCAAATCG</canonical>
            <polymorphic>CAACGACCAGCAGTGTATTCCTCTTTTGCCACCACAACAGGCTTGACTGTTACAAGACTCAACTCTTACAACTCATCTATCATTCTCGGAGCAGTTGCTGATGCTGCAAAGTCCGCTTCTTGTGTCTTCAATTACCAACTCACAGCAGAATCATCATGCATTCCAGGACCATTCGTTCATAATGTTGTCGTCGCGGCCACTGACAGAAACAAGTATCGTGCCGTGCCAGGATACTGTTTCACTCCAGATACCCACTCGGCTCCTCTCTGGTCATGCATCAATAACGGTACCCGTAGCGGTGTGAGCAGTTGTAATTGCGCTACCAACTGGGATGGTCTTCATTGTGAAGTTCCGAAGTGTTTGAACGGCGGATACCCAGACAAGTTCCCCAACGGAGGAGGCCATGGAAACTGCATCTGTCCATTTGGAGTCACTGGAAGCTTCTGCGAAATTAGTGAGTTGGTCTTACAAAATAAAAATTAATTTGAATATTGTTAGTRTCCTGCCCAACGACATCTCCTGACACTTTTCAATCATACAACAGATCTTTTGCTCTCGTTGTTCAAAATTCGCTCTCTGCCAATCAAGCGATGCTCAGACTTAACGATGGACTCACAGCTATGCTCAACAAAGGACTATCCAATGATTTTGAAGATTACATTCTGACCACGTACAAGACCAGAGTTATTGGAGGACTACCAGTTCCGGATGTAACTTCTACCAAATTCAGCTCAGCGTCTGCTTTCGTGAATGCCACTACTGATGATGGAATCATGTGGTCATACTCTCCAAATGGTACCCAACCAGGATTGTTTGCCCTTGAGACCACACTGAGATCGATGGATTACGACAAGTCGTCTATTTTCTTTTTCACCGATTCCGAATCTTCGATGGTTGAGGGAACTTTGAACTTTACTGATATTGTGTGAGAACTTCAAAATCTGTGGTTATAGTTTTCAATGTACGAATTACAGCCAACAAGCAGTCGAACGCCAAATCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>90 90 80 74 57 54 54 53 50 47 43 43 43 25 24 22 21 18 18 16 16 15 13 13 7 5 3 2 2 2</canonical_bands>
                <polymorphic_bands>90 90 80 74 68 57 54 54 53 50 47 43 43 24 22 21 18 18 16 16 15 13 13 7 5 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAACTGCATCTGTCCATTT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAATCATTGGATAGTCCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAACTGCATCTGTCCATTTGGAGTCACTGGAAGCTTCTGCGAAATTAGTGAGTTGGTCTTACAAAATAAAAATTAATTTGAATATTGTTAGTGTCCTGCCCAACGACATCTCCTGACACTTTTCAATCATACAACAGATCTTTTGCTCTCGTTGTTCAAAATTCGCTCTCTGCCAATCAAGCGATGCTCAGACTTAACGATGGACTCACAGCTATGCTCAACAAAGGACTATCCAATGATTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GAAACTGCATCTGTCCATTTGGAGTCACTGGAAGCTTCTGCGAAATTAGTGAGTTGGTCTTACAAAATAAAAATTAATTTGAATATTGTTAGTRTCCTGCCCAACGACATCTCCTGACACTTTTCAATCATACAACAGATCTTTTGCTCTCGTTGTTCAAAATTCGCTCTCTGCCAATCAAGCGATGCTCAGACTTAACGATGGACTCACAGCTATGCTCAACAAAGGACTATCCAATGATTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34619</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>301595</contig_pos>
        <strand>+</strand>
        <context>TCTTTTATAT[C/T]GTCTACTGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAACTCCGAAAATTTCAGACAATCCACTTGATCCTTCTTCTCTTTTATAT</left_flank>
        <right_flank>GTCTACTGGTTCACTCTACCTACAGACGTATGGAATCCCTGTTACTACTA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCACATTATACTTGCTCTTCGAGCTCAAATATCTCGATTTCTGTCAATGATATCAAAATATTACTGATAAATTGCTTATCATAATATCAACAAAATTTAATCAATTGACAATTTTTTGATATCTCTAGAAACCTAGATAATTGCTGAAAATTCGAGTATACACTACTGAAGACATCAGGTAACCTGACTCAGAAATTATTGATTCAGGTTCTAAAAAATCTATTATTTTCGAGGTCCACACAAAAATACAAAATTTTTGACTCCAAAAGGAATCGAACTTTGGTGTTGTGAACCGTGAATTTTGTAGCCAAGCCCATTGACCCACCAGGAACACTTCTTTGAAAATTACTTTTTGGGTTTTTTTTTTGGAATTATTAGAAATCAAAAAGCGTTTCCTATGTTTGAAAACGTCCAAAAATGGGAGTTTGAAATAATTTAAAAATTCCAATAACTCCGAAAATTTCAGACAATCCACTTGATCCTTCTTCTCTTTTATATCGTCTACTGGTTCACTCTACCTACAGACGTATGGAATCCCTGTTACTACTACATGCCAGATTTCTATTGGCGTTAGTTGTAAATCTAATTACTGTACTTTGAGTATTTTTCAGTGACTTTCCGACTTTTCCCGGCATTTATTTTCTGTCAAACCATCTTGACCGGATTCGTTGCCTTCGTGATTCATCGAAAGAGACATCATAAATATTCGACAGTTGGAAGATATGGTGTTTAATTCGGTTTATTTGTTAAAACTCGTTATTTTTGTTTGAAATAAAGACATTTTTATGATAGAAGAGAATTAAAGTCCGAGAGCTTTCTTGACCAATTTTGTAGCCTCAATGGCGGTTCCCCATCCGAGTGTGAAGCCATTACTTCCATGACCATAGTGATGAACAACCTGAAAAAATGAATTCGAAATTTTTTTCGATTGATATCAAAAATTACACACTCCGGGTTCCTGTGAGGATTAGAGTGGCCTACCATGATTTTTCTAGACCA</canonical>
            <polymorphic>GCCACATTATACTTGCTCTTCGAGCTCAAATATCTCGATTTCTGTCAATGATATCAAAATATTACTGATAAATTGCTTATCATAATATCAACAAAATTTAATCAATTGACAATTTTTTGATATCTCTAGAAACCTAGATAATTGCTGAAAATTCGAGTATACACTACTGAAGACATCAGGTAACCTGACTCAGAAATTATTGATTCAGGTTCTAAAAAATCTATTATTTTCGAGGTCCACACAAAAATACAAAATTTTTGACTCCAAAAGGAATCGAACTTTGGTGTTGTGAACCGTGAATTTTGTAGCCAAGCCCATTGACCCACCAGGAACACTTCTTTGAAAATTACTTTTTGGGTTTTTTTTTTGGAATTATTAGAAATCAAAAAGCGTTTCCTATGTTTGAAAACGTCCAAAAATGGGAGTTTGAAATAATTTAAAAATTCCAATAACTCCGAAAATTTCAGACAATCCACTTGATCCTTCTTCTCTTTTATATYGTCTACTGGTTCACTCTACCTACAGACGTATGGAATCCCTGTTACTACTACATGCCAGATTTCTATTGGCGTTAGTTGTAAATCTAATTACTGTACTTTGAGTATTTTTCAGTGACTTTCCGACTTTTCCCGGCATTTATTTTCTGTCAAACCATCTTGACCGGATTCGTTGCCTTCGTGATTCATCGAAAGAGACATCATAAATATTCGACAGTTGGAAGATATGGTGTTTAATTCGGTTTATTTGTTAAAACTCGTTATTTTTGTTTGAAATAAAGACATTTTTATGATAGAAGAGAATTAAAGTCCGAGAGCTTTCTTGACCAATTTTGTAGCCTCAATGGCGGTTCCCCATCCGAGTGTGAAGCCATTACTTCCATGACCATAGTGATGAACAACCTGAAAAAATGAATTCGAAATTTTTTTCGATTGATATCAAAAATTACACACTCCGGGTTCCTGTGAGGATTAGAGTGGCCTACCATGATTTTTCTAGACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAATGGGAGTTTGAAATAA</pcr_primer_p1>
		<pcr_primer_p2>AAGATGGTTTGACAGAAAATAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATGGGAGTTTGAAATAATTTAAAAATTCCAATAACTCCGAAAATTTCAGACAATCCACTTGATCCTTCTTCTCTTTTATATCGTCTACTGGTTCACTCTACCTACAGACGTATGGAATCCCTGTTACTACTACATGCCAGATTTCTATTGGCGTTAGTTGTAAATCTAATTACTGTACTTTGAGTATTTTTCAGTGACTTTCCGACTTTTCCCGGCATTTATTTTCTGTCAAACCATCTT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAATGGGAGTTTGAAATAATTTAAAAATTCCAATAACTCCGAAAATTTCAGACAATCCACTTGATCCTTCTTCTCTTTTATATYGTCTACTGGTTCACTCTACCTACAGACGTATGGAATCCCTGTTACTACTACATGCCAGATTTCTATTGGCGTTAGTTGTAAATCTAATTACTGTACTTTGAGTATTTTTCAGTGACTTTCCGACTTTTCCCGGCATTTATTTTCTGTCAAACCATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34620</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>301791</contig_pos>
        <strand>+</strand>
        <context>TCGAAAGAGA[C/T]ATCATAAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCAAACCATCTTGACCGGATTCGTTGCCTTCGTGATTCATCGAAAGAGA</left_flank>
        <right_flank>ATCATAAATATTCGACAGTTGGAAGATATGGTGTTTAATTCGGTTTATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATTGATTCAGGTTCTAAAAAATCTATTATTTTCGAGGTCCACACAAAAATACAAAATTTTTGACTCCAAAAGGAATCGAACTTTGGTGTTGTGAACCGTGAATTTTGTAGCCAAGCCCATTGACCCACCAGGAACACTTCTTTGAAAATTACTTTTTGGGTTTTTTTTTTGGAATTATTAGAAATCAAAAAGCGTTTCCTATGTTTGAAAACGTCCAAAAATGGGAGTTTGAAATAATTTAAAAATTCCAATAACTCCGAAAATTTCAGACAATCCACTTGATCCTTCTTCTCTTTTATATCGTCTACTGGTTCACTCTACCTACAGACGTATGGAATCCCTGTTACTACTACATGCCAGATTTCTATTGGCGTTAGTTGTAAATCTAATTACTGTACTTTGAGTATTTTTCAGTGACTTTCCGACTTTTCCCGGCATTTATTTTCTGTCAAACCATCTTGACCGGATTCGTTGCCTTCGTGATTCATCGAAAGAGACATCATAAATATTCGACAGTTGGAAGATATGGTGTTTAATTCGGTTTATTTGTTAAAACTCGTTATTTTTGTTTGAAATAAAGACATTTTTATGATAGAAGAGAATTAAAGTCCGAGAGCTTTCTTGACCAATTTTGTAGCCTCAATGGCGGTTCCCCATCCGAGTGTGAAGCCATTACTTCCATGACCATAGTGATGAACAACCTGAAAAAATGAATTCGAAATTTTTTTCGATTGATATCAAAAATTACACACTCCGGGTTCCTGTGAGGATTAGAGTGGCCTACCATGATTTTTCTAGACCATCGTAGTGGACGGTCCAGAAATGATTAAACATGCACCTGATGTGTTTTCTAGGTCATATAACATGGTGACCCAACTTTCGAGAGTTGAGTTTTCTAGGCCATCAACTTTTATGGCTTCCAAATGGCTTGACGGATTCCCTAGGCCATTTTGACATGGTGACCTAACTATTTAAAGTTGGTCTTACTAGGCCACGAT</canonical>
            <polymorphic>TTATTGATTCAGGTTCTAAAAAATCTATTATTTTCGAGGTCCACACAAAAATACAAAATTTTTGACTCCAAAAGGAATCGAACTTTGGTGTTGTGAACCGTGAATTTTGTAGCCAAGCCCATTGACCCACCAGGAACACTTCTTTGAAAATTACTTTTTGGGTTTTTTTTTTGGAATTATTAGAAATCAAAAAGCGTTTCCTATGTTTGAAAACGTCCAAAAATGGGAGTTTGAAATAATTTAAAAATTCCAATAACTCCGAAAATTTCAGACAATCCACTTGATCCTTCTTCTCTTTTATATCGTCTACTGGTTCACTCTACCTACAGACGTATGGAATCCCTGTTACTACTACATGCCAGATTTCTATTGGCGTTAGTTGTAAATCTAATTACTGTACTTTGAGTATTTTTCAGTGACTTTCCGACTTTTCCCGGCATTTATTTTCTGTCAAACCATCTTGACCGGATTCGTTGCCTTCGTGATTCATCGAAAGAGAYATCATAAATATTCGACAGTTGGAAGATATGGTGTTTAATTCGGTTTATTTGTTAAAACTCGTTATTTTTGTTTGAAATAAAGACATTTTTATGATAGAAGAGAATTAAAGTCCGAGAGCTTTCTTGACCAATTTTGTAGCCTCAATGGCGGTTCCCCATCCGAGTGTGAAGCCATTACTTCCATGACCATAGTGATGAACAACCTGAAAAAATGAATTCGAAATTTTTTTCGATTGATATCAAAAATTACACACTCCGGGTTCCTGTGAGGATTAGAGTGGCCTACCATGATTTTTCTAGACCATCGTAGTGGACGGTCCAGAAATGATTAAACATGCACCTGATGTGTTTTCTAGGTCATATAACATGGTGACCCAACTTTCGAGAGTTGAGTTTTCTAGGCCATCAACTTTTATGGCTTCCAAATGGCTTGACGGATTCCCTAGGCCATTTTGACATGGTGACCTAACTATTTAAAGTTGGTCTTACTAGGCCACGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTATTGGCGTTAGTTGTAAAT</pcr_primer_p1>
		<pcr_primer_p2>CGGACTTTAATTCTCTTCTATCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTATTGGCGTTAGTTGTAAATCTAATTACTGTACTTTGAGTATTTTTCAGTGACTTTCCGACTTTTCCCGGCATTTATTTTCTGTCAAACCATCTTGACCGGATTCGTTGCCTTCGTGATTCATCGAAAGAGACATCATAAATATTCGACAGTTGGAAGATATGGTGTTTAATTCGGTTTATTTGTTAAAACTCGTTATTTTTGTTTGAAATAAAGACATTTTTATGATAGAAGAGAATTAAAGTCCG</canonical_amplicon>
		<polymorphic_amplicon>TTCTATTGGCGTTAGTTGTAAATCTAATTACTGTACTTTGAGTATTTTTCAGTGACTTTCCGACTTTTCCCGGCATTTATTTTCTGTCAAACCATCTTGACCGGATTCGTTGCCTTCGTGATTCATCGAAAGAGAYATCATAAATATTCGACAGTTGGAAGATATGGTGTTTAATTCGGTTTATTTGTTAAAACTCGTTATTTTTGTTTGAAATAAAGACATTTTTATGATAGAAGAGAATTAAAGTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34621</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>301813</contig_pos>
        <strand>+</strand>
        <context>TCGACAGTTG[A/G]AAGATATGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTTGCCTTCGTGATTCATCGAAAGAGACATCATAAATATTCGACAGTTG</left_flank>
        <right_flank>AAGATATGGTGTTTAATTCGGTTTATTTGTTAAAACTCGTTATTTTTGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTATTATTTTCGAGGTCCACACAAAAATACAAAATTTTTGACTCCAAAAGGAATCGAACTTTGGTGTTGTGAACCGTGAATTTTGTAGCCAAGCCCATTGACCCACCAGGAACACTTCTTTGAAAATTACTTTTTGGGTTTTTTTTTTGGAATTATTAGAAATCAAAAAGCGTTTCCTATGTTTGAAAACGTCCAAAAATGGGAGTTTGAAATAATTTAAAAATTCCAATAACTCCGAAAATTTCAGACAATCCACTTGATCCTTCTTCTCTTTTATATCGTCTACTGGTTCACTCTACCTACAGACGTATGGAATCCCTGTTACTACTACATGCCAGATTTCTATTGGCGTTAGTTGTAAATCTAATTACTGTACTTTGAGTATTTTTCAGTGACTTTCCGACTTTTCCCGGCATTTATTTTCTGTCAAACCATCTTGACCGGATTCGTTGCCTTCGTGATTCATCGAAAGAGACATCATAAATATTCGACAGTTGGAAGATATGGTGTTTAATTCGGTTTATTTGTTAAAACTCGTTATTTTTGTTTGAAATAAAGACATTTTTATGATAGAAGAGAATTAAAGTCCGAGAGCTTTCTTGACCAATTTTGTAGCCTCAATGGCGGTTCCCCATCCGAGTGTGAAGCCATTACTTCCATGACCATAGTGATGAACAACCTGAAAAAATGAATTCGAAATTTTTTTCGATTGATATCAAAAATTACACACTCCGGGTTCCTGTGAGGATTAGAGTGGCCTACCATGATTTTTCTAGACCATCGTAGTGGACGGTCCAGAAATGATTAAACATGCACCTGATGTGTTTTCTAGGTCATATAACATGGTGACCCAACTTTCGAGAGTTGAGTTTTCTAGGCCATCAACTTTTATGGCTTCCAAATGGCTTGACGGATTCCCTAGGCCATTTTGACATGGTGACCTAACTATTTAAAGTTGGTCTTACTAGGCCACGATGGTAAACTGGCCTAGAACCTGC</canonical>
            <polymorphic>ATCTATTATTTTCGAGGTCCACACAAAAATACAAAATTTTTGACTCCAAAAGGAATCGAACTTTGGTGTTGTGAACCGTGAATTTTGTAGCCAAGCCCATTGACCCACCAGGAACACTTCTTTGAAAATTACTTTTTGGGTTTTTTTTTTGGAATTATTAGAAATCAAAAAGCGTTTCCTATGTTTGAAAACGTCCAAAAATGGGAGTTTGAAATAATTTAAAAATTCCAATAACTCCGAAAATTTCAGACAATCCACTTGATCCTTCTTCTCTTTTATATCGTCTACTGGTTCACTCTACCTACAGACGTATGGAATCCCTGTTACTACTACATGCCAGATTTCTATTGGCGTTAGTTGTAAATCTAATTACTGTACTTTGAGTATTTTTCAGTGACTTTCCGACTTTTCCCGGCATTTATTTTCTGTCAAACCATCTTGACCGGATTCGTTGCCTTCGTGATTCATCGAAAGAGACATCATAAATATTCGACAGTTGRAAGATATGGTGTTTAATTCGGTTTATTTGTTAAAACTCGTTATTTTTGTTTGAAATAAAGACATTTTTATGATAGAAGAGAATTAAAGTCCGAGAGCTTTCTTGACCAATTTTGTAGCCTCAATGGCGGTTCCCCATCCGAGTGTGAAGCCATTACTTCCATGACCATAGTGATGAACAACCTGAAAAAATGAATTCGAAATTTTTTTCGATTGATATCAAAAATTACACACTCCGGGTTCCTGTGAGGATTAGAGTGGCCTACCATGATTTTTCTAGACCATCGTAGTGGACGGTCCAGAAATGATTAAACATGCACCTGATGTGTTTTCTAGGTCATATAACATGGTGACCCAACTTTCGAGAGTTGAGTTTTCTAGGCCATCAACTTTTATGGCTTCCAAATGGCTTGACGGATTCCCTAGGCCATTTTGACATGGTGACCTAACTATTTAAAGTTGGTCTTACTAGGCCACGATGGTAAACTGGCCTAGAACCTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTATTGGCGTTAGTTGTAAAT</pcr_primer_p1>
		<pcr_primer_p2>CGGACTTTAATTCTCTTCTATCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTATTGGCGTTAGTTGTAAATCTAATTACTGTACTTTGAGTATTTTTCAGTGACTTTCCGACTTTTCCCGGCATTTATTTTCTGTCAAACCATCTTGACCGGATTCGTTGCCTTCGTGATTCATCGAAAGAGACATCATAAATATTCGACAGTTGGAAGATATGGTGTTTAATTCGGTTTATTTGTTAAAACTCGTTATTTTTGTTTGAAATAAAGACATTTTTATGATAGAAGAGAATTAAAGTCCG</canonical_amplicon>
		<polymorphic_amplicon>TTCTATTGGCGTTAGTTGTAAATCTAATTACTGTACTTTGAGTATTTTTCAGTGACTTTCCGACTTTTCCCGGCATTTATTTTCTGTCAAACCATCTTGACCGGATTCGTTGCCTTCGTGATTCATCGAAAGAGACATCATAAATATTCGACAGTTGRAAGATATGGTGTTTAATTCGGTTTATTTGTTAAAACTCGTTATTTTTGTTTGAAATAAAGACATTTTTATGATAGAAGAGAATTAAAGTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34622</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>301832</contig_pos>
        <strand>+</strand>
        <context>GTGTTTAATT[C/T]GGTTTATTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAAAGAGACATCATAAATATTCGACAGTTGGAAGATATGGTGTTTAATT</left_flank>
        <right_flank>GGTTTATTTGTTAAAACTCGTTATTTTTGTTTGAAATAAAGACATTTTTA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACACAAAAATACAAAATTTTTGACTCCAAAAGGAATCGAACTTTGGTGTTGTGAACCGTGAATTTTGTAGCCAAGCCCATTGACCCACCAGGAACACTTCTTTGAAAATTACTTTTTGGGTTTTTTTTTTGGAATTATTAGAAATCAAAAAGCGTTTCCTATGTTTGAAAACGTCCAAAAATGGGAGTTTGAAATAATTTAAAAATTCCAATAACTCCGAAAATTTCAGACAATCCACTTGATCCTTCTTCTCTTTTATATCGTCTACTGGTTCACTCTACCTACAGACGTATGGAATCCCTGTTACTACTACATGCCAGATTTCTATTGGCGTTAGTTGTAAATCTAATTACTGTACTTTGAGTATTTTTCAGTGACTTTCCGACTTTTCCCGGCATTTATTTTCTGTCAAACCATCTTGACCGGATTCGTTGCCTTCGTGATTCATCGAAAGAGACATCATAAATATTCGACAGTTGGAAGATATGGTGTTTAATTCGGTTTATTTGTTAAAACTCGTTATTTTTGTTTGAAATAAAGACATTTTTATGATAGAAGAGAATTAAAGTCCGAGAGCTTTCTTGACCAATTTTGTAGCCTCAATGGCGGTTCCCCATCCGAGTGTGAAGCCATTACTTCCATGACCATAGTGATGAACAACCTGAAAAAATGAATTCGAAATTTTTTTCGATTGATATCAAAAATTACACACTCCGGGTTCCTGTGAGGATTAGAGTGGCCTACCATGATTTTTCTAGACCATCGTAGTGGACGGTCCAGAAATGATTAAACATGCACCTGATGTGTTTTCTAGGTCATATAACATGGTGACCCAACTTTCGAGAGTTGAGTTTTCTAGGCCATCAACTTTTATGGCTTCCAAATGGCTTGACGGATTCCCTAGGCCATTTTGACATGGTGACCTAACTATTTAAAGTTGGTCTTACTAGGCCACGATGGTAAACTGGCCTAGAACCTGCCTAACATGCCCGGTGTGTT</canonical>
            <polymorphic>CACACAAAAATACAAAATTTTTGACTCCAAAAGGAATCGAACTTTGGTGTTGTGAACCGTGAATTTTGTAGCCAAGCCCATTGACCCACCAGGAACACTTCTTTGAAAATTACTTTTTGGGTTTTTTTTTTGGAATTATTAGAAATCAAAAAGCGTTTCCTATGTTTGAAAACGTCCAAAAATGGGAGTTTGAAATAATTTAAAAATTCCAATAACTCCGAAAATTTCAGACAATCCACTTGATCCTTCTTCTCTTTTATATCGTCTACTGGTTCACTCTACCTACAGACGTATGGAATCCCTGTTACTACTACATGCCAGATTTCTATTGGCGTTAGTTGTAAATCTAATTACTGTACTTTGAGTATTTTTCAGTGACTTTCCGACTTTTCCCGGCATTTATTTTCTGTCAAACCATCTTGACCGGATTCGTTGCCTTCGTGATTCATCGAAAGAGACATCATAAATATTCGACAGTTGGAAGATATGGTGTTTAATTYGGTTTATTTGTTAAAACTCGTTATTTTTGTTTGAAATAAAGACATTTTTATGATAGAAGAGAATTAAAGTCCGAGAGCTTTCTTGACCAATTTTGTAGCCTCAATGGCGGTTCCCCATCCGAGTGTGAAGCCATTACTTCCATGACCATAGTGATGAACAACCTGAAAAAATGAATTCGAAATTTTTTTCGATTGATATCAAAAATTACACACTCCGGGTTCCTGTGAGGATTAGAGTGGCCTACCATGATTTTTCTAGACCATCGTAGTGGACGGTCCAGAAATGATTAAACATGCACCTGATGTGTTTTCTAGGTCATATAACATGGTGACCCAACTTTCGAGAGTTGAGTTTTCTAGGCCATCAACTTTTATGGCTTCCAAATGGCTTGACGGATTCCCTAGGCCATTTTGACATGGTGACCTAACTATTTAAAGTTGGTCTTACTAGGCCACGATGGTAAACTGGCCTAGAACCTGCCTAACATGCCCGGTGTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTATTGGCGTTAGTTGTAAAT</pcr_primer_p1>
		<pcr_primer_p2>CGGACTTTAATTCTCTTCTATCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTATTGGCGTTAGTTGTAAATCTAATTACTGTACTTTGAGTATTTTTCAGTGACTTTCCGACTTTTCCCGGCATTTATTTTCTGTCAAACCATCTTGACCGGATTCGTTGCCTTCGTGATTCATCGAAAGAGACATCATAAATATTCGACAGTTGGAAGATATGGTGTTTAATTCGGTTTATTTGTTAAAACTCGTTATTTTTGTTTGAAATAAAGACATTTTTATGATAGAAGAGAATTAAAGTCCG</canonical_amplicon>
		<polymorphic_amplicon>TTCTATTGGCGTTAGTTGTAAATCTAATTACTGTACTTTGAGTATTTTTCAGTGACTTTCCGACTTTTCCCGGCATTTATTTTCTGTCAAACCATCTTGACCGGATTCGTTGCCTTCGTGATTCATCGAAAGAGACATCATAAATATTCGACAGTTGGAAGATATGGTGTTTAATTYGGTTTATTTGTTAAAACTCGTTATTTTTGTTTGAAATAAAGACATTTTTATGATAGAAGAGAATTAAAGTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34623</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>302167</contig_pos>
        <strand></strand>
        <context>catggtgacc[C/T]aactttcgag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGATTAAACATGCACCTGATGTGTTTTCTAGGTCATATAACATGGTGACC</left_flank>
        <right_flank>AACTTTCGAGAGTTGAGTTTTCTAGGCCATCAACTTTTATGGCTTCCAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTTGTAAATCTAATTACTGTACTTTGAGTATTTTTCAGTGACTTTCCGACTTTTCCCGGCATTTATTTTCTGTCAAACCATCTTGACCGGATTCGTTGCCTTCGTGATTCATCGAAAGAGACATCATAAATATTCGACAGTTGGAAGATATGGTGTTTAATTCGGTTTATTTGTTAAAACTCGTTATTTTTGTTTGAAATAAAGACATTTTTATGATAGAAGAGAATTAAAGTCCGAGAGCTTTCTTGACCAATTTTGTAGCCTCAATGGCGGTTCCCCATCCGAGTGTGAAGCCATTACTTCCATGACCATAGTGATGAACAACCTGAAAAAATGAATTCGAAATTTTTTTCGATTGATATCAAAAATTACACACTCCGGGTTCCTGTGAGGATTAGAGTGGCCTACCATGATTTTTCTAGACCATCGTAGTGGACGGTCCAGAAATGATTAAACATGCACCTGATGTGTTTTCTAGGTCATATAACATGGTGACCCAACTTTCGAGAGTTGAGTTTTCTAGGCCATCAACTTTTATGGCTTCCAAATGGCTTGACGGATTCCCTAGGCCATTTTGACATGGTGACCTAACTATTTAAAGTTGGTCTTACTAGGCCACGATGGTAAACTGGCCTAGAACCTGCCTAACATGCCCGGTGTGTTCACTAGGTCATTTAACATGGTGGTCTAACTTTTGCTAGTTTTCTTGGCCACCATGGTAAATGACCTAGAAAACAGACCAGGTGAATATTAGGCAATTACTATGCCTAGAAAACTCAACTTGCAAAAGTTTGGCCTCCATGTTAAATGACCCAGAAAACACAAAAGGAGCATGTGAGGCCATTTCTAGGTCACATTAACGTGGTCGCCTAGAAAACTCAACTTTGCAAAACTTAGGCCATCAGGTTAAAGTGTCAATGTTTCGAAGAATTCCTTGAAAAGAAATTTTAGAAGTCAAACGTACAGTATATTCCTTCCCGGTTTCAGTAGTTTTCCGT</canonical>
            <polymorphic>TAGTTGTAAATCTAATTACTGTACTTTGAGTATTTTTCAGTGACTTTCCGACTTTTCCCGGCATTTATTTTCTGTCAAACCATCTTGACCGGATTCGTTGCCTTCGTGATTCATCGAAAGAGACATCATAAATATTCGACAGTTGGAAGATATGGTGTTTAATTCGGTTTATTTGTTAAAACTCGTTATTTTTGTTTGAAATAAAGACATTTTTATGATAGAAGAGAATTAAAGTCCGAGAGCTTTCTTGACCAATTTTGTAGCCTCAATGGCGGTTCCCCATCCGAGTGTGAAGCCATTACTTCCATGACCATAGTGATGAACAACCTGAAAAAATGAATTCGAAATTTTTTTCGATTGATATCAAAAATTACACACTCCGGGTTCCTGTGAGGATTAGAGTGGCCTACCATGATTTTTCTAGACCATCGTAGTGGACGGTCCAGAAATGATTAAACATGCACCTGATGTGTTTTCTAGGTCATATAACATGGTGACCYAACTTTCGAGAGTTGAGTTTTCTAGGCCATCAACTTTTATGGCTTCCAAATGGCTTGACGGATTCCCTAGGCCATTTTGACATGGTGACCTAACTATTTAAAGTTGGTCTTACTAGGCCACGATGGTAAACTGGCCTAGAACCTGCCTAACATGCCCGGTGTGTTCACTAGGTCATTTAACATGGTGGTCTAACTTTTGCTAGTTTTCTTGGCCACCATGGTAAATGACCTAGAAAACAGACCAGGTGAATATTAGGCAATTACTATGCCTAGAAAACTCAACTTGCAAAAGTTTGGCCTCCATGTTAAATGACCCAGAAAACACAAAAGGAGCATGTGAGGCCATTTCTAGGTCACATTAACGTGGTCGCCTAGAAAACTCAACTTTGCAAAACTTAGGCCATCAGGTTAAAGTGTCAATGTTTCGAAGAATTCCTTGAAAAGAAATTTTAGAAGTCAAACGTACAGTATATTCCTTCCCGGTTTCAGTAGTTTTCCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGTGATGAACAACCTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAATTCTTCGAAACATTGACA</pcr_primer_p2>
		<pcr_amplicon_size>623</pcr_amplicon_size>
		<canonical_amplicon>ATAGTGATGAACAACCTGAAAAAATGAATTCGAAATTTTTTTCGATTGATATCAAAAATTACACACTCCGGGTTCCTGTGAGGATTAGAGTGGCCTACCATGATTTTTCTAGACCATCGTAGTGGACGGTCCAGAAATGATTAAACATGCACCTGATGTGTTTTCTAGGTCATATAACATGGTGACCCAACTTTCGAGAGTTGAGTTTTCTAGGCCATCAACTTTTATGGCTTCCAAATGGCTTGACGGATTCCCTAGGCCATTTTGACATGGTGACCTAACTATTTAAAGTTGGTCTTACTAGGCCACGATGGTAAACTGGCCTAGAACCTGCCTAACATGCCCGGTGTGTTCACTAGGTCATTTAACATGGTGGTCTAACTTTTGCTAGTTTTCTTGGCCACCATGGTAAATGACCTAGAAAACAGACCAGGTGAATATTAGGCAATTACTATGCCTAGAAAACTCAACTTGCAAAAGTTTGGCCTCCATGTTAAATGACCCAGAAAACACAAAAGGAGCATGTGAGGCCATTTCTAGGTCACATTAACGTGGTCGCCTAGAAAACTCAACTTTGCAAAACTTAGGCCATCAGGTTAAAGTGTCAATGTTTCGAAGAATTC</canonical_amplicon>
		<polymorphic_amplicon>ATAGTGATGAACAACCTGAAAAAATGAATTCGAAATTTTTTTCGATTGATATCAAAAATTACACACTCCGGGTTCCTGTGAGGATTAGAGTGGCCTACCATGATTTTTCTAGACCATCGTAGTGGACGGTCCAGAAATGATTAAACATGCACCTGATGTGTTTTCTAGGTCATATAACATGGTGACCYAACTTTCGAGAGTTGAGTTTTCTAGGCCATCAACTTTTATGGCTTCCAAATGGCTTGACGGATTCCCTAGGCCATTTTGACATGGTGACCTAACTATTTAAAGTTGGTCTTACTAGGCCACGATGGTAAACTGGCCTAGAACCTGCCTAACATGCCCGGTGTGTTCACTAGGTCATTTAACATGGTGGTCTAACTTTTGCTAGTTTTCTTGGCCACCATGGTAAATGACCTAGAAAACAGACCAGGTGAATATTAGGCAATTACTATGCCTAGAAAACTCAACTTGCAAAAGTTTGGCCTCCATGTTAAATGACCCAGAAAACACAAAAGGAGCATGTGAGGCCATTTCTAGGTCACATTAACGTGGTCGCCTAGAAAACTCAACTTTGCAAAACTTAGGCCATCAGGTTAAAGTGTCAATGTTTCGAAGAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34624</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>302226</contig_pos>
        <strand></strand>
        <context>aatggcttga[C/T]ggattcccta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAGTTGAGTTTTCTAGGCCATCAACTTTTATGGCTTCCAAATGGCTTGA</left_flank>
        <right_flank>GGATTCCCTAGGCCATTTTGACATGGTGACCTAACTATTTAAAGTTGGTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCATTTATTTTCTGTCAAACCATCTTGACCGGATTCGTTGCCTTCGTGATTCATCGAAAGAGACATCATAAATATTCGACAGTTGGAAGATATGGTGTTTAATTCGGTTTATTTGTTAAAACTCGTTATTTTTGTTTGAAATAAAGACATTTTTATGATAGAAGAGAATTAAAGTCCGAGAGCTTTCTTGACCAATTTTGTAGCCTCAATGGCGGTTCCCCATCCGAGTGTGAAGCCATTACTTCCATGACCATAGTGATGAACAACCTGAAAAAATGAATTCGAAATTTTTTTCGATTGATATCAAAAATTACACACTCCGGGTTCCTGTGAGGATTAGAGTGGCCTACCATGATTTTTCTAGACCATCGTAGTGGACGGTCCAGAAATGATTAAACATGCACCTGATGTGTTTTCTAGGTCATATAACATGGTGACCCAACTTTCGAGAGTTGAGTTTTCTAGGCCATCAACTTTTATGGCTTCCAAATGGCTTGACGGATTCCCTAGGCCATTTTGACATGGTGACCTAACTATTTAAAGTTGGTCTTACTAGGCCACGATGGTAAACTGGCCTAGAACCTGCCTAACATGCCCGGTGTGTTCACTAGGTCATTTAACATGGTGGTCTAACTTTTGCTAGTTTTCTTGGCCACCATGGTAAATGACCTAGAAAACAGACCAGGTGAATATTAGGCAATTACTATGCCTAGAAAACTCAACTTGCAAAAGTTTGGCCTCCATGTTAAATGACCCAGAAAACACAAAAGGAGCATGTGAGGCCATTTCTAGGTCACATTAACGTGGTCGCCTAGAAAACTCAACTTTGCAAAACTTAGGCCATCAGGTTAAAGTGTCAATGTTTCGAAGAATTCCTTGAAAAGAAATTTTAGAAGTCAAACGTACAGTATATTCCTTCCCGGTTTCAGTAGTTTTCCGTTGCTGAGATTCAATTCTGACATGCTTCCTGCCTGGACGAAGTGCGGACCACTCTTTCAG</canonical>
            <polymorphic>GGCATTTATTTTCTGTCAAACCATCTTGACCGGATTCGTTGCCTTCGTGATTCATCGAAAGAGACATCATAAATATTCGACAGTTGGAAGATATGGTGTTTAATTCGGTTTATTTGTTAAAACTCGTTATTTTTGTTTGAAATAAAGACATTTTTATGATAGAAGAGAATTAAAGTCCGAGAGCTTTCTTGACCAATTTTGTAGCCTCAATGGCGGTTCCCCATCCGAGTGTGAAGCCATTACTTCCATGACCATAGTGATGAACAACCTGAAAAAATGAATTCGAAATTTTTTTCGATTGATATCAAAAATTACACACTCCGGGTTCCTGTGAGGATTAGAGTGGCCTACCATGATTTTTCTAGACCATCGTAGTGGACGGTCCAGAAATGATTAAACATGCACCTGATGTGTTTTCTAGGTCATATAACATGGTGACCCAACTTTCGAGAGTTGAGTTTTCTAGGCCATCAACTTTTATGGCTTCCAAATGGCTTGAYGGATTCCCTAGGCCATTTTGACATGGTGACCTAACTATTTAAAGTTGGTCTTACTAGGCCACGATGGTAAACTGGCCTAGAACCTGCCTAACATGCCCGGTGTGTTCACTAGGTCATTTAACATGGTGGTCTAACTTTTGCTAGTTTTCTTGGCCACCATGGTAAATGACCTAGAAAACAGACCAGGTGAATATTAGGCAATTACTATGCCTAGAAAACTCAACTTGCAAAAGTTTGGCCTCCATGTTAAATGACCCAGAAAACACAAAAGGAGCATGTGAGGCCATTTCTAGGTCACATTAACGTGGTCGCCTAGAAAACTCAACTTTGCAAAACTTAGGCCATCAGGTTAAAGTGTCAATGTTTCGAAGAATTCCTTGAAAAGAAATTTTAGAAGTCAAACGTACAGTATATTCCTTCCCGGTTTCAGTAGTTTTCCGTTGCTGAGATTCAATTCTGACATGCTTCCTGCCTGGACGAAGTGCGGACCACTCTTTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGTGATGAACAACCTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAATTCTTCGAAACATTGACA</pcr_primer_p2>
		<pcr_amplicon_size>623</pcr_amplicon_size>
		<canonical_amplicon>ATAGTGATGAACAACCTGAAAAAATGAATTCGAAATTTTTTTCGATTGATATCAAAAATTACACACTCCGGGTTCCTGTGAGGATTAGAGTGGCCTACCATGATTTTTCTAGACCATCGTAGTGGACGGTCCAGAAATGATTAAACATGCACCTGATGTGTTTTCTAGGTCATATAACATGGTGACCCAACTTTCGAGAGTTGAGTTTTCTAGGCCATCAACTTTTATGGCTTCCAAATGGCTTGACGGATTCCCTAGGCCATTTTGACATGGTGACCTAACTATTTAAAGTTGGTCTTACTAGGCCACGATGGTAAACTGGCCTAGAACCTGCCTAACATGCCCGGTGTGTTCACTAGGTCATTTAACATGGTGGTCTAACTTTTGCTAGTTTTCTTGGCCACCATGGTAAATGACCTAGAAAACAGACCAGGTGAATATTAGGCAATTACTATGCCTAGAAAACTCAACTTGCAAAAGTTTGGCCTCCATGTTAAATGACCCAGAAAACACAAAAGGAGCATGTGAGGCCATTTCTAGGTCACATTAACGTGGTCGCCTAGAAAACTCAACTTTGCAAAACTTAGGCCATCAGGTTAAAGTGTCAATGTTTCGAAGAATTC</canonical_amplicon>
		<polymorphic_amplicon>ATAGTGATGAACAACCTGAAAAAATGAATTCGAAATTTTTTTCGATTGATATCAAAAATTACACACTCCGGGTTCCTGTGAGGATTAGAGTGGCCTACCATGATTTTTCTAGACCATCGTAGTGGACGGTCCAGAAATGATTAAACATGCACCTGATGTGTTTTCTAGGTCATATAACATGGTGACCCAACTTTCGAGAGTTGAGTTTTCTAGGCCATCAACTTTTATGGCTTCCAAATGGCTTGAYGGATTCCCTAGGCCATTTTGACATGGTGACCTAACTATTTAAAGTTGGTCTTACTAGGCCACGATGGTAAACTGGCCTAGAACCTGCCTAACATGCCCGGTGTGTTCACTAGGTCATTTAACATGGTGGTCTAACTTTTGCTAGTTTTCTTGGCCACCATGGTAAATGACCTAGAAAACAGACCAGGTGAATATTAGGCAATTACTATGCCTAGAAAACTCAACTTGCAAAAGTTTGGCCTCCATGTTAAATGACCCAGAAAACACAAAAGGAGCATGTGAGGCCATTTCTAGGTCACATTAACGTGGTCGCCTAGAAAACTCAACTTTGCAAAACTTAGGCCATCAGGTTAAAGTGTCAATGTTTCGAAGAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34625</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>302255</contig_pos>
        <strand></strand>
        <context>tgacatggtg[A/G]cctaactatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATGGCTTCCAAATGGCTTGACGGATTCCCTAGGCCATTTTGACATGGTG</left_flank>
        <right_flank>CCTAACTATTTAAAGTTGGTCTTACTAGGCCACGATGGTAAACTGGCCTA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGGATTCGTTGCCTTCGTGATTCATCGAAAGAGACATCATAAATATTCGACAGTTGGAAGATATGGTGTTTAATTCGGTTTATTTGTTAAAACTCGTTATTTTTGTTTGAAATAAAGACATTTTTATGATAGAAGAGAATTAAAGTCCGAGAGCTTTCTTGACCAATTTTGTAGCCTCAATGGCGGTTCCCCATCCGAGTGTGAAGCCATTACTTCCATGACCATAGTGATGAACAACCTGAAAAAATGAATTCGAAATTTTTTTCGATTGATATCAAAAATTACACACTCCGGGTTCCTGTGAGGATTAGAGTGGCCTACCATGATTTTTCTAGACCATCGTAGTGGACGGTCCAGAAATGATTAAACATGCACCTGATGTGTTTTCTAGGTCATATAACATGGTGACCCAACTTTCGAGAGTTGAGTTTTCTAGGCCATCAACTTTTATGGCTTCCAAATGGCTTGACGGATTCCCTAGGCCATTTTGACATGGTGACCTAACTATTTAAAGTTGGTCTTACTAGGCCACGATGGTAAACTGGCCTAGAACCTGCCTAACATGCCCGGTGTGTTCACTAGGTCATTTAACATGGTGGTCTAACTTTTGCTAGTTTTCTTGGCCACCATGGTAAATGACCTAGAAAACAGACCAGGTGAATATTAGGCAATTACTATGCCTAGAAAACTCAACTTGCAAAAGTTTGGCCTCCATGTTAAATGACCCAGAAAACACAAAAGGAGCATGTGAGGCCATTTCTAGGTCACATTAACGTGGTCGCCTAGAAAACTCAACTTTGCAAAACTTAGGCCATCAGGTTAAAGTGTCAATGTTTCGAAGAATTCCTTGAAAAGAAATTTTAGAAGTCAAACGTACAGTATATTCCTTCCCGGTTTCAGTAGTTTTCCGTTGCTGAGATTCAATTCTGACATGCTTCCTGCCTGGACGAAGTGCGGACCACTCTTTCAGAATCTTTGGTTCCTAGAAAAACTTTATAT</canonical>
            <polymorphic>CCGGATTCGTTGCCTTCGTGATTCATCGAAAGAGACATCATAAATATTCGACAGTTGGAAGATATGGTGTTTAATTCGGTTTATTTGTTAAAACTCGTTATTTTTGTTTGAAATAAAGACATTTTTATGATAGAAGAGAATTAAAGTCCGAGAGCTTTCTTGACCAATTTTGTAGCCTCAATGGCGGTTCCCCATCCGAGTGTGAAGCCATTACTTCCATGACCATAGTGATGAACAACCTGAAAAAATGAATTCGAAATTTTTTTCGATTGATATCAAAAATTACACACTCCGGGTTCCTGTGAGGATTAGAGTGGCCTACCATGATTTTTCTAGACCATCGTAGTGGACGGTCCAGAAATGATTAAACATGCACCTGATGTGTTTTCTAGGTCATATAACATGGTGACCCAACTTTCGAGAGTTGAGTTTTCTAGGCCATCAACTTTTATGGCTTCCAAATGGCTTGACGGATTCCCTAGGCCATTTTGACATGGTGRCCTAACTATTTAAAGTTGGTCTTACTAGGCCACGATGGTAAACTGGCCTAGAACCTGCCTAACATGCCCGGTGTGTTCACTAGGTCATTTAACATGGTGGTCTAACTTTTGCTAGTTTTCTTGGCCACCATGGTAAATGACCTAGAAAACAGACCAGGTGAATATTAGGCAATTACTATGCCTAGAAAACTCAACTTGCAAAAGTTTGGCCTCCATGTTAAATGACCCAGAAAACACAAAAGGAGCATGTGAGGCCATTTCTAGGTCACATTAACGTGGTCGCCTAGAAAACTCAACTTTGCAAAACTTAGGCCATCAGGTTAAAGTGTCAATGTTTCGAAGAATTCCTTGAAAAGAAATTTTAGAAGTCAAACGTACAGTATATTCCTTCCCGGTTTCAGTAGTTTTCCGTTGCTGAGATTCAATTCTGACATGCTTCCTGCCTGGACGAAGTGCGGACCACTCTTTCAGAATCTTTGGTTCCTAGAAAAACTTTATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGTNACC</site>
                <isoschizomers>
                    <enzyme>BstEII</enzyme>
                    <enzyme>BstPI</enzyme>
                    <enzyme>Eco91I</enzyme>
                    <enzyme>EcoO65I</enzyme>
                    <enzyme>PspEI</enzyme>
                </isoschizomers>
                <canonical_bands>504 405 91</canonical_bands>
                <polymorphic_bands>595 405</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>405 268 236 91</canonical_bands>
                <polymorphic_bands>405 359 236</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>405 268 236 91</canonical_bands>
                <polymorphic_bands>405 359 236</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAGTGATGAACAACCTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAATTCTTCGAAACATTGACA</pcr_primer_p2>
		<pcr_amplicon_size>623</pcr_amplicon_size>
		<canonical_amplicon>ATAGTGATGAACAACCTGAAAAAATGAATTCGAAATTTTTTTCGATTGATATCAAAAATTACACACTCCGGGTTCCTGTGAGGATTAGAGTGGCCTACCATGATTTTTCTAGACCATCGTAGTGGACGGTCCAGAAATGATTAAACATGCACCTGATGTGTTTTCTAGGTCATATAACATGGTGACCCAACTTTCGAGAGTTGAGTTTTCTAGGCCATCAACTTTTATGGCTTCCAAATGGCTTGACGGATTCCCTAGGCCATTTTGACATGGTGACCTAACTATTTAAAGTTGGTCTTACTAGGCCACGATGGTAAACTGGCCTAGAACCTGCCTAACATGCCCGGTGTGTTCACTAGGTCATTTAACATGGTGGTCTAACTTTTGCTAGTTTTCTTGGCCACCATGGTAAATGACCTAGAAAACAGACCAGGTGAATATTAGGCAATTACTATGCCTAGAAAACTCAACTTGCAAAAGTTTGGCCTCCATGTTAAATGACCCAGAAAACACAAAAGGAGCATGTGAGGCCATTTCTAGGTCACATTAACGTGGTCGCCTAGAAAACTCAACTTTGCAAAACTTAGGCCATCAGGTTAAAGTGTCAATGTTTCGAAGAATTC</canonical_amplicon>
		<polymorphic_amplicon>ATAGTGATGAACAACCTGAAAAAATGAATTCGAAATTTTTTTCGATTGATATCAAAAATTACACACTCCGGGTTCCTGTGAGGATTAGAGTGGCCTACCATGATTTTTCTAGACCATCGTAGTGGACGGTCCAGAAATGATTAAACATGCACCTGATGTGTTTTCTAGGTCATATAACATGGTGACCCAACTTTCGAGAGTTGAGTTTTCTAGGCCATCAACTTTTATGGCTTCCAAATGGCTTGACGGATTCCCTAGGCCATTTTGACATGGTGRCCTAACTATTTAAAGTTGGTCTTACTAGGCCACGATGGTAAACTGGCCTAGAACCTGCCTAACATGCCCGGTGTGTTCACTAGGTCATTTAACATGGTGGTCTAACTTTTGCTAGTTTTCTTGGCCACCATGGTAAATGACCTAGAAAACAGACCAGGTGAATATTAGGCAATTACTATGCCTAGAAAACTCAACTTGCAAAAGTTTGGCCTCCATGTTAAATGACCCAGAAAACACAAAAGGAGCATGTGAGGCCATTTCTAGGTCACATTAACGTGGTCGCCTAGAAAACTCAACTTTGCAAAACTTAGGCCATCAGGTTAAAGTGTCAATGTTTCGAAGAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34626</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>302368</contig_pos>
        <strand></strand>
        <context>taacttttgc[T/A]agttttcttg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CATGCCCGGTGTGTTCACTAGGTCATTTAACATGGTGGTCTAACTTTTGC</left_flank>
        <right_flank>AGTTTTCTTGGCCACCATGGTAAATGACCTAGAAAACAGACCAGGTGAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAGACATTTTTATGATAGAAGAGAATTAAAGTCCGAGAGCTTTCTTGACCAATTTTGTAGCCTCAATGGCGGTTCCCCATCCGAGTGTGAAGCCATTACTTCCATGACCATAGTGATGAACAACCTGAAAAAATGAATTCGAAATTTTTTTCGATTGATATCAAAAATTACACACTCCGGGTTCCTGTGAGGATTAGAGTGGCCTACCATGATTTTTCTAGACCATCGTAGTGGACGGTCCAGAAATGATTAAACATGCACCTGATGTGTTTTCTAGGTCATATAACATGGTGACCCAACTTTCGAGAGTTGAGTTTTCTAGGCCATCAACTTTTATGGCTTCCAAATGGCTTGACGGATTCCCTAGGCCATTTTGACATGGTGACCTAACTATTTAAAGTTGGTCTTACTAGGCCACGATGGTAAACTGGCCTAGAACCTGCCTAACATGCCCGGTGTGTTCACTAGGTCATTTAACATGGTGGTCTAACTTTTGCTAGTTTTCTTGGCCACCATGGTAAATGACCTAGAAAACAGACCAGGTGAATATTAGGCAATTACTATGCCTAGAAAACTCAACTTGCAAAAGTTTGGCCTCCATGTTAAATGACCCAGAAAACACAAAAGGAGCATGTGAGGCCATTTCTAGGTCACATTAACGTGGTCGCCTAGAAAACTCAACTTTGCAAAACTTAGGCCATCAGGTTAAAGTGTCAATGTTTCGAAGAATTCCTTGAAAAGAAATTTTAGAAGTCAAACGTACAGTATATTCCTTCCCGGTTTCAGTAGTTTTCCGTTGCTGAGATTCAATTCTGACATGCTTCCTGCCTGGACGAAGTGCGGACCACTCTTTCAGAATCTTTGGTTCCTAGAAAAACTTTATATTCTTCTCCAATAAAATTCTCTTAAAAACTACCCGCATTCCGGGATGCAACTCAATGTATCTGCTCAAAATATCATTGCGATCCTCATCAGTGATCTCAAGATCCCAACGATTA</canonical>
            <polymorphic>TAAAGACATTTTTATGATAGAAGAGAATTAAAGTCCGAGAGCTTTCTTGACCAATTTTGTAGCCTCAATGGCGGTTCCCCATCCGAGTGTGAAGCCATTACTTCCATGACCATAGTGATGAACAACCTGAAAAAATGAATTCGAAATTTTTTTCGATTGATATCAAAAATTACACACTCCGGGTTCCTGTGAGGATTAGAGTGGCCTACCATGATTTTTCTAGACCATCGTAGTGGACGGTCCAGAAATGATTAAACATGCACCTGATGTGTTTTCTAGGTCATATAACATGGTGACCCAACTTTCGAGAGTTGAGTTTTCTAGGCCATCAACTTTTATGGCTTCCAAATGGCTTGACGGATTCCCTAGGCCATTTTGACATGGTGACCTAACTATTTAAAGTTGGTCTTACTAGGCCACGATGGTAAACTGGCCTAGAACCTGCCTAACATGCCCGGTGTGTTCACTAGGTCATTTAACATGGTGGTCTAACTTTTGCWAGTTTTCTTGGCCACCATGGTAAATGACCTAGAAAACAGACCAGGTGAATATTAGGCAATTACTATGCCTAGAAAACTCAACTTGCAAAAGTTTGGCCTCCATGTTAAATGACCCAGAAAACACAAAAGGAGCATGTGAGGCCATTTCTAGGTCACATTAACGTGGTCGCCTAGAAAACTCAACTTTGCAAAACTTAGGCCATCAGGTTAAAGTGTCAATGTTTCGAAGAATTCCTTGAAAAGAAATTTTAGAAGTCAAACGTACAGTATATTCCTTCCCGGTTTCAGTAGTTTTCCGTTGCTGAGATTCAATTCTGACATGCTTCCTGCCTGGACGAAGTGCGGACCACTCTTTCAGAATCTTTGGTTCCTAGAAAAACTTTATATTCTTCTCCAATAAAATTCTCTTAAAAACTACCCGCATTCCGGGATGCAACTCAATGTATCTGCTCAAAATATCATTGCGATCCTCATCAGTGATCTCAAGATCCCAACGATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>220 200 129 79 56 46 45 45 40 32 32 30 23 23</canonical_bands>
                <polymorphic_bands>220 200 129 79 62 56 46 45 45 40 32 23 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAGTGATGAACAACCTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAATTCTTCGAAACATTGACA</pcr_primer_p2>
		<pcr_amplicon_size>623</pcr_amplicon_size>
		<canonical_amplicon>ATAGTGATGAACAACCTGAAAAAATGAATTCGAAATTTTTTTCGATTGATATCAAAAATTACACACTCCGGGTTCCTGTGAGGATTAGAGTGGCCTACCATGATTTTTCTAGACCATCGTAGTGGACGGTCCAGAAATGATTAAACATGCACCTGATGTGTTTTCTAGGTCATATAACATGGTGACCCAACTTTCGAGAGTTGAGTTTTCTAGGCCATCAACTTTTATGGCTTCCAAATGGCTTGACGGATTCCCTAGGCCATTTTGACATGGTGACCTAACTATTTAAAGTTGGTCTTACTAGGCCACGATGGTAAACTGGCCTAGAACCTGCCTAACATGCCCGGTGTGTTCACTAGGTCATTTAACATGGTGGTCTAACTTTTGCTAGTTTTCTTGGCCACCATGGTAAATGACCTAGAAAACAGACCAGGTGAATATTAGGCAATTACTATGCCTAGAAAACTCAACTTGCAAAAGTTTGGCCTCCATGTTAAATGACCCAGAAAACACAAAAGGAGCATGTGAGGCCATTTCTAGGTCACATTAACGTGGTCGCCTAGAAAACTCAACTTTGCAAAACTTAGGCCATCAGGTTAAAGTGTCAATGTTTCGAAGAATTC</canonical_amplicon>
		<polymorphic_amplicon>ATAGTGATGAACAACCTGAAAAAATGAATTCGAAATTTTTTTCGATTGATATCAAAAATTACACACTCCGGGTTCCTGTGAGGATTAGAGTGGCCTACCATGATTTTTCTAGACCATCGTAGTGGACGGTCCAGAAATGATTAAACATGCACCTGATGTGTTTTCTAGGTCATATAACATGGTGACCCAACTTTCGAGAGTTGAGTTTTCTAGGCCATCAACTTTTATGGCTTCCAAATGGCTTGACGGATTCCCTAGGCCATTTTGACATGGTGACCTAACTATTTAAAGTTGGTCTTACTAGGCCACGATGGTAAACTGGCCTAGAACCTGCCTAACATGCCCGGTGTGTTCACTAGGTCATTTAACATGGTGGTCTAACTTTTGCWAGTTTTCTTGGCCACCATGGTAAATGACCTAGAAAACAGACCAGGTGAATATTAGGCAATTACTATGCCTAGAAAACTCAACTTGCAAAAGTTTGGCCTCCATGTTAAATGACCCAGAAAACACAAAAGGAGCATGTGAGGCCATTTCTAGGTCACATTAACGTGGTCGCCTAGAAAACTCAACTTTGCAAAACTTAGGCCATCAGGTTAAAGTGTCAATGTTTCGAAGAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34627</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>313240</contig_pos>
        <strand>+</strand>
        <context>ACATTCTCGA[C/T]TTTTTTTAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGATCGGATCCACAGTTTTCAGTTATCTCGGCTGTCAGACATTCTCGA</left_flank>
        <right_flank>TTTTTTTAAACATCTCACACATTTCAGAGTTTTCCGCTTCCATGGTGCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCGCCATCTATCAATTTTTCGAGACGGATTTCAAAAAGTGTCGTGAGAGAATGGAAAAAATGATCGACTTGCCCGTTTGCGTTACCAAATTTCTATCTACAACGGGTCCAATCGAATGCGATGTGCTTCAGGAGCACGTCGAATGCTATAAAGATCATGTCAGTTTGATATGCGATGACGAGAGCTCGCTTTTTCATTTCTGGTTGCGCAGACATATTGACGATTACGCCCAGATTATTCAGTGTCAGTTGGAGTACTAATTTGTGGTGTCTTTTTTGGTGTGATTATTTTCAAAATTCCCTGTCATTCTTTTATTTCTTGTCGTCAGATCTCAATCACATCCCACTTTTTTTATTCAAGCGAACTTTTTTCAAATAAAAATTAATGAATCTTTAATAAATTAAACACTCATGAAGAAGCATGACGTCTTCTACAAACTCTTCGACCATCAGATCGGATCCACAGTTTTCAGTTATCTCGGCTGTCAGACATTCTCGATTTTTTTTAAACATCTCACACATTTCAGAGTTTTCCGCTTCCATGGTGCTCATGAGTGGAAGAAGGCATGGTGCGAAACCCAAGTTGAAACGCATTTGGAGCTGAAAAAATCCATTTCCTTTGAGTTCAATTATCTCGGTTCATGGGAGAGATAGCAAAGTTTGGTTGATAAAATTTTGATATCTTTTGATACAATTTTGATATCTTTTATAGGAACCGAGATAATTGAGTCCAAAGTGCCCATATATGTAGGGTGGGATTCCATAGAGCATTTTAATGAAGTTTTGGAAAATATGGAAATTTCAGGAAACTTCTAACATACCTTTTTCAAACAACCATTGTACTTGTTGACAGCTTTCTCAAAAACCGCACACGATGTTTTCACAAACTTGTACTCCATGGTTATCGTTTTACATTTGATTGGGGTGATACATTCCTGAAATCACTTTTCATGAACGTTTAGAGTTTTTCACTAACCAATACAGTGGTGCAGGTAGCTGA</canonical>
            <polymorphic>TGCGCCATCTATCAATTTTTCGAGACGGATTTCAAAAAGTGTCGTGAGAGAATGGAAAAAATGATCGACTTGCCCGTTTGCGTTACCAAATTTCTATCTACAACGGGTCCAATCGAATGCGATGTGCTTCAGGAGCACGTCGAATGCTATAAAGATCATGTCAGTTTGATATGCGATGACGAGAGCTCGCTTTTTCATTTCTGGTTGCGCAGACATATTGACGATTACGCCCAGATTATTCAGTGTCAGTTGGAGTACTAATTTGTGGTGTCTTTTTTGGTGTGATTATTTTCAAAATTCCCTGTCATTCTTTTATTTCTTGTCGTCAGATCTCAATCACATCCCACTTTTTTTATTCAAGCGAACTTTTTTCAAATAAAAATTAATGAATCTTTAATAAATTAAACACTCATGAAGAAGCATGACGTCTTCTACAAACTCTTCGACCATCAGATCGGATCCACAGTTTTCAGTTATCTCGGCTGTCAGACATTCTCGAYTTTTTTTAAACATCTCACACATTTCAGAGTTTTCCGCTTCCATGGTGCTCATGAGTGGAAGAAGGCATGGTGCGAAACCCAAGTTGAAACGCATTTGGAGCTGAAAAAATCCATTTCCTTTGAGTTCAATTATCTCGGTTCATGGGAGAGATAGCAAAGTTTGGTTGATAAAATTTTGATATCTTTTGATACAATTTTGATATCTTTTATAGGAACCGAGATAATTGAGTCCAAAGTGCCCATATATGTAGGGTGGGATTCCATAGAGCATTTTAATGAAGTTTTGGAAAATATGGAAATTTCAGGAAACTTCTAACATACCTTTTTCAAACAACCATTGTACTTGTTGACAGCTTTCTCAAAAACCGCACACGATGTTTTCACAAACTTGTACTCCATGGTTATCGTTTTACATTTGATTGGGGTGATACATTCCTGAAATCACTTTTCATGAACGTTTAGAGTTTTTCACTAACCAATACAGTGGTGCAGGTAGCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTGTCGTCAGATCTCAATC</pcr_primer_p1>
		<pcr_primer_p2>CTTCTTCCACTCATGAGCAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTTGTCGTCAGATCTCAATCACATCCCACTTTTTTTATTCAAGCGAACTTTTTTCAAATAAAAATTAATGAATCTTTAATAAATTAAACACTCATGAAGAAGCATGACGTCTTCTACAAACTCTTCGACCATCAGATCGGATCCACAGTTTTCAGTTATCTCGGCTGTCAGACATTCTCGATTTTTTTTAAACATCTCACACATTTCAGAGTTTTCCGCTTCCATGGTGCTCATGAGTGGAAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TCTTGTCGTCAGATCTCAATCACATCCCACTTTTTTTATTCAAGCGAACTTTTTTCAAATAAAAATTAATGAATCTTTAATAAATTAAACACTCATGAAGAAGCATGACGTCTTCTACAAACTCTTCGACCATCAGATCGGATCCACAGTTTTCAGTTATCTCGGCTGTCAGACATTCTCGAYTTTTTTTAAACATCTCACACATTTCAGAGTTTTCCGCTTCCATGGTGCTCATGAGTGGAAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34628</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>317064</contig_pos>
        <strand></strand>
        <context>AAGAAATTAG[A/T]CTTACGCCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACATCTTTGATGCAACGCTGAAAAAAGTTAGGGTTATAGAAGAAATTAG</left_flank>
        <right_flank>CTTACGCCTACCGTAGTCTCTCCACACTGCTCGACCATCTTTTGCATGTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGACTTGAGGAATAGATTTTCAGTAGCTATGAATTAAACGTAAAATTATATTTCTACAAATTGTCAAGCTTTCAGGATACTTATGTCTAAAGATATACCCGTTTTTATCAAACGGGTCGCTGTGCGGCAAGGTGTATGACCCCAAGAAGAAACCCCCAAGTGTGGGACAACTTCTGATACAGTAATCTTCAAACATACCTCTCCGAATCGTTTCAGCATTGCGTATCCACATTGCTCTTCAATTTCCTTATCAATACACTTCTGGTTCTCCATCCATCCTTCACATTTTGCCTCTTTTTGGAACAAGAAGTTCAGACATTCCACATTTCCTTCAGTTGCTTTCTTTTTGAGTTTCAGTGCGCATTGTCCGAACTCGTCCTTGATGAATGCAAAAACGTCGCACAATTTGCCGGTACGAATGAATTCAATACGGTAGCTGAGGCACTTGACATCTTTGATGCAACGCTGAAAAAAGTTAGGGTTATAGAAGAAATTAGACTTACGCCTACCGTAGTCTCTCCACACTGCTCGACCATCTTTTGCATGTGGTCCGATTCTTGGTCATCGAATCTTGGCTCAAAGCGCAACGTGGCATTTACCAAATCGGCAACCATTGGAGCACACTTTTGAGCAGCGACAAGGTCGGGTCCTTCGCAATGGTTGATAGCAGTGAAGAGAGCGAAGAATGTGACAAAGATGGTGCCTCCGAAGATCACGAAACAGACGATTCCAGAGCAGAGGACACAGCAGAGAAATGCGCCAATCCAACCACAAACGCTGCAGCGCATGGTGTCTTCAATTTTAGGATAGAGGTTTTCAGATAGAGAAAGTAGAAGAAAATATACTTTAAAACATGGAATATATGGGCGTCCTAACTTTTAACTTCAAGACATTTTTTCTTGGTTCCTGTTAACGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATGATATAAGAAGTGTTTTGTCAGTTGACACAGTTTTAATATCTTGCA</canonical>
            <polymorphic>CCAGACTTGAGGAATAGATTTTCAGTAGCTATGAATTAAACGTAAAATTATATTTCTACAAATTGTCAAGCTTTCAGGATACTTATGTCTAAAGATATACCCGTTTTTATCAAACGGGTCGCTGTGCGGCAAGGTGTATGACCCCAAGAAGAAACCCCCAAGTGTGGGACAACTTCTGATACAGTAATCTTCAAACATACCTCTCCGAATCGTTTCAGCATTGCGTATCCACATTGCTCTTCAATTTCCTTATCAATACACTTCTGGTTCTCCATCCATCCTTCACATTTTGCCTCTTTTTGGAACAAGAAGTTCAGACATTCCACATTTCCTTCAGTTGCTTTCTTTTTGAGTTTCAGTGCGCATTGTCCGAACTCGTCCTTGATGAATGCAAAAACGTCGCACAATTTGCCGGTACGAATGAATTCAATACGGTAGCTGAGGCACTTGACATCTTTGATGCAACGCTGAAAAAAGTTAGGGTTATAGAAGAAATTAGWCTTACGCCTACCGTAGTCTCTCCACACTGCTCGACCATCTTTTGCATGTGGTCCGATTCTTGGTCATCGAATCTTGGCTCAAAGCGCAACGTGGCATTTACCAAATCGGCAACCATTGGAGCACACTTTTGAGCAGCGACAAGGTCGGGTCCTTCGCAATGGTTGATAGCAGTGAAGAGAGCGAAGAATGTGACAAAGATGGTGCCTCCGAAGATCACGAAACAGACGATTCCAGAGCAGAGGACACAGCAGAGAAATGCGCCAATCCAACCACAAACGCTGCAGCGCATGGTGTCTTCAATTTTAGGATAGAGGTTTTCAGATAGAGAAAGTAGAAGAAAATATACTTTAAAACATGGAATATATGGGCGTCCTAACTTTTAACTTCAAGACATTTTTTCTTGGTTCCTGTTAACGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATGATATAAGAAGTGTTTTGTCAGTTGACACAGTTTTAATATCTTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGCTGAGGCACTTGACAT</pcr_primer_p1>
		<pcr_primer_p2>GCTCTCTTCACTGCTATCAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTAGCTGAGGCACTTGACATCTTTGATGCAACGCTGAAAAAAGTTAGGGTTATAGAAGAAATTAGACTTACGCCTACCGTAGTCTCTCCACACTGCTCGACCATCTTTTGCATGTGGTCCGATTCTTGGTCATCGAATCTTGGCTCAAAGCGCAACGTGGCATTTACCAAATCGGCAACCATTGGAGCACACTTTTGAGCAGCGACAAGGTCGGGTCCTTCGCAATGGTTGATAGCAGTGAAGAGAGC</canonical_amplicon>
		<polymorphic_amplicon>GTAGCTGAGGCACTTGACATCTTTGATGCAACGCTGAAAAAAGTTAGGGTTATAGAAGAAATTAGWCTTACGCCTACCGTAGTCTCTCCACACTGCTCGACCATCTTTTGCATGTGGTCCGATTCTTGGTCATCGAATCTTGGCTCAAAGCGCAACGTGGCATTTACCAAATCGGCAACCATTGGAGCACACTTTTGAGCAGCGACAAGGTCGGGTCCTTCGCAATGGTTGATAGCAGTGAAGAGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34629</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>317172</contig_pos>
        <strand></strand>
        <context>TTACCAAATC[G/A]GCAACCATTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCTTGGTCATCGAATCTTGGCTCAAAGCGCAACGTGGCATTTACCAAATC</left_flank>
        <right_flank>GCAACCATTGGAGCACACTTTTGAGCAGCGACAAGGTCGGGTCCTTCGCA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAAACGGGTCGCTGTGCGGCAAGGTGTATGACCCCAAGAAGAAACCCCCAAGTGTGGGACAACTTCTGATACAGTAATCTTCAAACATACCTCTCCGAATCGTTTCAGCATTGCGTATCCACATTGCTCTTCAATTTCCTTATCAATACACTTCTGGTTCTCCATCCATCCTTCACATTTTGCCTCTTTTTGGAACAAGAAGTTCAGACATTCCACATTTCCTTCAGTTGCTTTCTTTTTGAGTTTCAGTGCGCATTGTCCGAACTCGTCCTTGATGAATGCAAAAACGTCGCACAATTTGCCGGTACGAATGAATTCAATACGGTAGCTGAGGCACTTGACATCTTTGATGCAACGCTGAAAAAAGTTAGGGTTATAGAAGAAATTAGACTTACGCCTACCGTAGTCTCTCCACACTGCTCGACCATCTTTTGCATGTGGTCCGATTCTTGGTCATCGAATCTTGGCTCAAAGCGCAACGTGGCATTTACCAAATCGGCAACCATTGGAGCACACTTTTGAGCAGCGACAAGGTCGGGTCCTTCGCAATGGTTGATAGCAGTGAAGAGAGCGAAGAATGTGACAAAGATGGTGCCTCCGAAGATCACGAAACAGACGATTCCAGAGCAGAGGACACAGCAGAGAAATGCGCCAATCCAACCACAAACGCTGCAGCGCATGGTGTCTTCAATTTTAGGATAGAGGTTTTCAGATAGAGAAAGTAGAAGAAAATATACTTTAAAACATGGAATATATGGGCGTCCTAACTTTTAACTTCAAGACATTTTTTCTTGGTTCCTGTTAACGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATGATATAAGAAGTGTTTTGTCAGTTGACACAGTTTTAATATCTTGCATAGGAATCGAAATAATTGAGCTCAAACATCGCAGTGTGAGGGTTTACAGGTTTTACGGTAGAAAATTTTCCAGAGAATAAAAAAAAGCAAAACCAAAAAGTGATGGGT</canonical>
            <polymorphic>ATCAAACGGGTCGCTGTGCGGCAAGGTGTATGACCCCAAGAAGAAACCCCCAAGTGTGGGACAACTTCTGATACAGTAATCTTCAAACATACCTCTCCGAATCGTTTCAGCATTGCGTATCCACATTGCTCTTCAATTTCCTTATCAATACACTTCTGGTTCTCCATCCATCCTTCACATTTTGCCTCTTTTTGGAACAAGAAGTTCAGACATTCCACATTTCCTTCAGTTGCTTTCTTTTTGAGTTTCAGTGCGCATTGTCCGAACTCGTCCTTGATGAATGCAAAAACGTCGCACAATTTGCCGGTACGAATGAATTCAATACGGTAGCTGAGGCACTTGACATCTTTGATGCAACGCTGAAAAAAGTTAGGGTTATAGAAGAAATTAGACTTACGCCTACCGTAGTCTCTCCACACTGCTCGACCATCTTTTGCATGTGGTCCGATTCTTGGTCATCGAATCTTGGCTCAAAGCGCAACGTGGCATTTACCAAATCRGCAACCATTGGAGCACACTTTTGAGCAGCGACAAGGTCGGGTCCTTCGCAATGGTTGATAGCAGTGAAGAGAGCGAAGAATGTGACAAAGATGGTGCCTCCGAAGATCACGAAACAGACGATTCCAGAGCAGAGGACACAGCAGAGAAATGCGCCAATCCAACCACAAACGCTGCAGCGCATGGTGTCTTCAATTTTAGGATAGAGGTTTTCAGATAGAGAAAGTAGAAGAAAATATACTTTAAAACATGGAATATATGGGCGTCCTAACTTTTAACTTCAAGACATTTTTTCTTGGTTCCTGTTAACGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATGATATAAGAAGTGTTTTGTCAGTTGACACAGTTTTAATATCTTGCATAGGAATCGAAATAATTGAGCTCAAACATCGCAGTGTGAGGGTTTACAGGTTTTACGGTAGAAAATTTTCCAGAGAATAAAAAAAAGCAAAACCAAAAAGTGATGGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGCTGAGGCACTTGACAT</pcr_primer_p1>
		<pcr_primer_p2>GCTCTCTTCACTGCTATCAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTAGCTGAGGCACTTGACATCTTTGATGCAACGCTGAAAAAAGTTAGGGTTATAGAAGAAATTAGACTTACGCCTACCGTAGTCTCTCCACACTGCTCGACCATCTTTTGCATGTGGTCCGATTCTTGGTCATCGAATCTTGGCTCAAAGCGCAACGTGGCATTTACCAAATCGGCAACCATTGGAGCACACTTTTGAGCAGCGACAAGGTCGGGTCCTTCGCAATGGTTGATAGCAGTGAAGAGAGC</canonical_amplicon>
		<polymorphic_amplicon>GTAGCTGAGGCACTTGACATCTTTGATGCAACGCTGAAAAAAGTTAGGGTTATAGAAGAAATTAGACTTACGCCTACCGTAGTCTCTCCACACTGCTCGACCATCTTTTGCATGTGGTCCGATTCTTGGTCATCGAATCTTGGCTCAAAGCGCAACGTGGCATTTACCAAATCRGCAACCATTGGAGCACACTTTTGAGCAGCGACAAGGTCGGGTCCTTCGCAATGGTTGATAGCAGTGAAGAGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34630</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>317214</contig_pos>
        <strand></strand>
        <context>CAAGGTCGGG[T/C]CCTTCGCAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACCAAATCGGCAACCATTGGAGCACACTTTTGAGCAGCGACAAGGTCGGG</left_flank>
        <right_flank>CCTTCGCAATGGTTGATAGCAGTGAAGAGAGCGAAGAATGTGACAAAGAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAACCCCCAAGTGTGGGACAACTTCTGATACAGTAATCTTCAAACATACCTCTCCGAATCGTTTCAGCATTGCGTATCCACATTGCTCTTCAATTTCCTTATCAATACACTTCTGGTTCTCCATCCATCCTTCACATTTTGCCTCTTTTTGGAACAAGAAGTTCAGACATTCCACATTTCCTTCAGTTGCTTTCTTTTTGAGTTTCAGTGCGCATTGTCCGAACTCGTCCTTGATGAATGCAAAAACGTCGCACAATTTGCCGGTACGAATGAATTCAATACGGTAGCTGAGGCACTTGACATCTTTGATGCAACGCTGAAAAAAGTTAGGGTTATAGAAGAAATTAGACTTACGCCTACCGTAGTCTCTCCACACTGCTCGACCATCTTTTGCATGTGGTCCGATTCTTGGTCATCGAATCTTGGCTCAAAGCGCAACGTGGCATTTACCAAATCGGCAACCATTGGAGCACACTTTTGAGCAGCGACAAGGTCGGGTCCTTCGCAATGGTTGATAGCAGTGAAGAGAGCGAAGAATGTGACAAAGATGGTGCCTCCGAAGATCACGAAACAGACGATTCCAGAGCAGAGGACACAGCAGAGAAATGCGCCAATCCAACCACAAACGCTGCAGCGCATGGTGTCTTCAATTTTAGGATAGAGGTTTTCAGATAGAGAAAGTAGAAGAAAATATACTTTAAAACATGGAATATATGGGCGTCCTAACTTTTAACTTCAAGACATTTTTTCTTGGTTCCTGTTAACGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATGATATAAGAAGTGTTTTGTCAGTTGACACAGTTTTAATATCTTGCATAGGAATCGAAATAATTGAGCTCAAACATCGCAGTGTGAGGGTTTACAGGTTTTACGGTAGAAAATTTTCCAGAGAATAAAAAAAAGCAAAACCAAAAAGTGATGGGTGGAGAAAAGGGAAATGAAACTGCTCCCCCGCCCCATCTCATC</canonical>
            <polymorphic>GAAACCCCCAAGTGTGGGACAACTTCTGATACAGTAATCTTCAAACATACCTCTCCGAATCGTTTCAGCATTGCGTATCCACATTGCTCTTCAATTTCCTTATCAATACACTTCTGGTTCTCCATCCATCCTTCACATTTTGCCTCTTTTTGGAACAAGAAGTTCAGACATTCCACATTTCCTTCAGTTGCTTTCTTTTTGAGTTTCAGTGCGCATTGTCCGAACTCGTCCTTGATGAATGCAAAAACGTCGCACAATTTGCCGGTACGAATGAATTCAATACGGTAGCTGAGGCACTTGACATCTTTGATGCAACGCTGAAAAAAGTTAGGGTTATAGAAGAAATTAGACTTACGCCTACCGTAGTCTCTCCACACTGCTCGACCATCTTTTGCATGTGGTCCGATTCTTGGTCATCGAATCTTGGCTCAAAGCGCAACGTGGCATTTACCAAATCGGCAACCATTGGAGCACACTTTTGAGCAGCGACAAGGTCGGGYCCTTCGCAATGGTTGATAGCAGTGAAGAGAGCGAAGAATGTGACAAAGATGGTGCCTCCGAAGATCACGAAACAGACGATTCCAGAGCAGAGGACACAGCAGAGAAATGCGCCAATCCAACCACAAACGCTGCAGCGCATGGTGTCTTCAATTTTAGGATAGAGGTTTTCAGATAGAGAAAGTAGAAGAAAATATACTTTAAAACATGGAATATATGGGCGTCCTAACTTTTAACTTCAAGACATTTTTTCTTGGTTCCTGTTAACGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATGATATAAGAAGTGTTTTGTCAGTTGACACAGTTTTAATATCTTGCATAGGAATCGAAATAATTGAGCTCAAACATCGCAGTGTGAGGGTTTACAGGTTTTACGGTAGAAAATTTTCCAGAGAATAAAAAAAAGCAAAACCAAAAAGTGATGGGTGGAGAAAAGGGAAATGAAACTGCTCCCCCGCCCCATCTCATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>502 400 98</canonical_bands>
                <polymorphic_bands>600 400</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTCTTGGTCATCGAATCTT</pcr_primer_p1>
		<pcr_primer_p2>TGAAAACCTCTATCCTAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>GATTCTTGGTCATCGAATCTTGGCTCAAAGCGCAACGTGGCATTTACCAAATCGGCAACCATTGGAGCACACTTTTGAGCAGCGACAAGGTCGGGTCCTTCGCAATGGTTGATAGCAGTGAAGAGAGCGAAGAATGTGACAAAGATGGTGCCTCCGAAGATCACGAAACAGACGATTCCAGAGCAGAGGACACAGCAGAGAAATGCGCCAATCCAACCACAAACGCTGCAGCGCATGGTGTCTTCAATTTTAGGATAGAGGTTTTCA</canonical_amplicon>
		<polymorphic_amplicon>GATTCTTGGTCATCGAATCTTGGCTCAAAGCGCAACGTGGCATTTACCAAATCGGCAACCATTGGAGCACACTTTTGAGCAGCGACAAGGTCGGGYCCTTCGCAATGGTTGATAGCAGTGAAGAGAGCGAAGAATGTGACAAAGATGGTGCCTCCGAAGATCACGAAACAGACGATTCCAGAGCAGAGGACACAGCAGAGAAATGCGCCAATCCAACCACAAACGCTGCAGCGCATGGTGTCTTCAATTTTAGGATAGAGGTTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34631</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>317249</contig_pos>
        <strand></strand>
        <context>AAGAGAGCGA[A/G]GAATGTGACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCGACAAGGTCGGGTCCTTCGCAATGGTTGATAGCAGTGAAGAGAGCGA</left_flank>
        <right_flank>GAATGTGACAAAGATGGTGCCTCCGAAGATCACGAAACAGACGATTCCAG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCTTCAAACATACCTCTCCGAATCGTTTCAGCATTGCGTATCCACATTGCTCTTCAATTTCCTTATCAATACACTTCTGGTTCTCCATCCATCCTTCACATTTTGCCTCTTTTTGGAACAAGAAGTTCAGACATTCCACATTTCCTTCAGTTGCTTTCTTTTTGAGTTTCAGTGCGCATTGTCCGAACTCGTCCTTGATGAATGCAAAAACGTCGCACAATTTGCCGGTACGAATGAATTCAATACGGTAGCTGAGGCACTTGACATCTTTGATGCAACGCTGAAAAAAGTTAGGGTTATAGAAGAAATTAGACTTACGCCTACCGTAGTCTCTCCACACTGCTCGACCATCTTTTGCATGTGGTCCGATTCTTGGTCATCGAATCTTGGCTCAAAGCGCAACGTGGCATTTACCAAATCGGCAACCATTGGAGCACACTTTTGAGCAGCGACAAGGTCGGGTCCTTCGCAATGGTTGATAGCAGTGAAGAGAGCGAAGAATGTGACAAAGATGGTGCCTCCGAAGATCACGAAACAGACGATTCCAGAGCAGAGGACACAGCAGAGAAATGCGCCAATCCAACCACAAACGCTGCAGCGCATGGTGTCTTCAATTTTAGGATAGAGGTTTTCAGATAGAGAAAGTAGAAGAAAATATACTTTAAAACATGGAATATATGGGCGTCCTAACTTTTAACTTCAAGACATTTTTTCTTGGTTCCTGTTAACGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATGATATAAGAAGTGTTTTGTCAGTTGACACAGTTTTAATATCTTGCATAGGAATCGAAATAATTGAGCTCAAACATCGCAGTGTGAGGGTTTACAGGTTTTACGGTAGAAAATTTTCCAGAGAATAAAAAAAAGCAAAACCAAAAAGTGATGGGTGGAGAAAAGGGAAATGAAACTGCTCCCCCGCCCCATCTCATCTCTTTTTCCCCTTCTCTTAGTTCGTCAAGTGCCCC</canonical>
            <polymorphic>AATCTTCAAACATACCTCTCCGAATCGTTTCAGCATTGCGTATCCACATTGCTCTTCAATTTCCTTATCAATACACTTCTGGTTCTCCATCCATCCTTCACATTTTGCCTCTTTTTGGAACAAGAAGTTCAGACATTCCACATTTCCTTCAGTTGCTTTCTTTTTGAGTTTCAGTGCGCATTGTCCGAACTCGTCCTTGATGAATGCAAAAACGTCGCACAATTTGCCGGTACGAATGAATTCAATACGGTAGCTGAGGCACTTGACATCTTTGATGCAACGCTGAAAAAAGTTAGGGTTATAGAAGAAATTAGACTTACGCCTACCGTAGTCTCTCCACACTGCTCGACCATCTTTTGCATGTGGTCCGATTCTTGGTCATCGAATCTTGGCTCAAAGCGCAACGTGGCATTTACCAAATCGGCAACCATTGGAGCACACTTTTGAGCAGCGACAAGGTCGGGTCCTTCGCAATGGTTGATAGCAGTGAAGAGAGCGARGAATGTGACAAAGATGGTGCCTCCGAAGATCACGAAACAGACGATTCCAGAGCAGAGGACACAGCAGAGAAATGCGCCAATCCAACCACAAACGCTGCAGCGCATGGTGTCTTCAATTTTAGGATAGAGGTTTTCAGATAGAGAAAGTAGAAGAAAATATACTTTAAAACATGGAATATATGGGCGTCCTAACTTTTAACTTCAAGACATTTTTTCTTGGTTCCTGTTAACGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATGATATAAGAAGTGTTTTGTCAGTTGACACAGTTTTAATATCTTGCATAGGAATCGAAATAATTGAGCTCAAACATCGCAGTGTGAGGGTTTACAGGTTTTACGGTAGAAAATTTTCCAGAGAATAAAAAAAAGCAAAACCAAAAAGTGATGGGTGGAGAAAAGGGAAATGAAACTGCTCCCCCGCCCCATCTCATCTCTTTTTCCCCTTCTCTTAGTTCGTCAAGTGCCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTCTTGGTCATCGAATCTT</pcr_primer_p1>
		<pcr_primer_p2>TGAAAACCTCTATCCTAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>GATTCTTGGTCATCGAATCTTGGCTCAAAGCGCAACGTGGCATTTACCAAATCGGCAACCATTGGAGCACACTTTTGAGCAGCGACAAGGTCGGGTCCTTCGCAATGGTTGATAGCAGTGAAGAGAGCGAAGAATGTGACAAAGATGGTGCCTCCGAAGATCACGAAACAGACGATTCCAGAGCAGAGGACACAGCAGAGAAATGCGCCAATCCAACCACAAACGCTGCAGCGCATGGTGTCTTCAATTTTAGGATAGAGGTTTTCA</canonical_amplicon>
		<polymorphic_amplicon>GATTCTTGGTCATCGAATCTTGGCTCAAAGCGCAACGTGGCATTTACCAAATCGGCAACCATTGGAGCACACTTTTGAGCAGCGACAAGGTCGGGTCCTTCGCAATGGTTGATAGCAGTGAAGAGAGCGARGAATGTGACAAAGATGGTGCCTCCGAAGATCACGAAACAGACGATTCCAGAGCAGAGGACACAGCAGAGAAATGCGCCAATCCAACCACAAACGCTGCAGCGCATGGTGTCTTCAATTTTAGGATAGAGGTTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34632</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>317307</contig_pos>
        <strand></strand>
        <context>CAGAGCAGAG[G/A]ACACAGCAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACAAAGATGGTGCCTCCGAAGATCACGAAACAGACGATTCCAGAGCAGAG</left_flank>
        <right_flank>ACACAGCAGAGAAATGCGCCAATCCAACCACAAACGCTGCAGCGCATGGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCCTTATCAATACACTTCTGGTTCTCCATCCATCCTTCACATTTTGCCTCTTTTTGGAACAAGAAGTTCAGACATTCCACATTTCCTTCAGTTGCTTTCTTTTTGAGTTTCAGTGCGCATTGTCCGAACTCGTCCTTGATGAATGCAAAAACGTCGCACAATTTGCCGGTACGAATGAATTCAATACGGTAGCTGAGGCACTTGACATCTTTGATGCAACGCTGAAAAAAGTTAGGGTTATAGAAGAAATTAGACTTACGCCTACCGTAGTCTCTCCACACTGCTCGACCATCTTTTGCATGTGGTCCGATTCTTGGTCATCGAATCTTGGCTCAAAGCGCAACGTGGCATTTACCAAATCGGCAACCATTGGAGCACACTTTTGAGCAGCGACAAGGTCGGGTCCTTCGCAATGGTTGATAGCAGTGAAGAGAGCGAAGAATGTGACAAAGATGGTGCCTCCGAAGATCACGAAACAGACGATTCCAGAGCAGAGGACACAGCAGAGAAATGCGCCAATCCAACCACAAACGCTGCAGCGCATGGTGTCTTCAATTTTAGGATAGAGGTTTTCAGATAGAGAAAGTAGAAGAAAATATACTTTAAAACATGGAATATATGGGCGTCCTAACTTTTAACTTCAAGACATTTTTTCTTGGTTCCTGTTAACGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATGATATAAGAAGTGTTTTGTCAGTTGACACAGTTTTAATATCTTGCATAGGAATCGAAATAATTGAGCTCAAACATCGCAGTGTGAGGGTTTACAGGTTTTACGGTAGAAAATTTTCCAGAGAATAAAAAAAAGCAAAACCAAAAAGTGATGGGTGGAGAAAAGGGAAATGAAACTGCTCCCCCGCCCCATCTCATCTCTTTTTCCCCTTCTCTTAGTTCGTCAAGTGCCCCCGGAAAAGCCCCCGCCGAAAAGAGGTCCGTTCGTCTAATGAGAGGAGCGTGTGGCTCC</canonical>
            <polymorphic>ATTTCCTTATCAATACACTTCTGGTTCTCCATCCATCCTTCACATTTTGCCTCTTTTTGGAACAAGAAGTTCAGACATTCCACATTTCCTTCAGTTGCTTTCTTTTTGAGTTTCAGTGCGCATTGTCCGAACTCGTCCTTGATGAATGCAAAAACGTCGCACAATTTGCCGGTACGAATGAATTCAATACGGTAGCTGAGGCACTTGACATCTTTGATGCAACGCTGAAAAAAGTTAGGGTTATAGAAGAAATTAGACTTACGCCTACCGTAGTCTCTCCACACTGCTCGACCATCTTTTGCATGTGGTCCGATTCTTGGTCATCGAATCTTGGCTCAAAGCGCAACGTGGCATTTACCAAATCGGCAACCATTGGAGCACACTTTTGAGCAGCGACAAGGTCGGGTCCTTCGCAATGGTTGATAGCAGTGAAGAGAGCGAAGAATGTGACAAAGATGGTGCCTCCGAAGATCACGAAACAGACGATTCCAGAGCAGAGRACACAGCAGAGAAATGCGCCAATCCAACCACAAACGCTGCAGCGCATGGTGTCTTCAATTTTAGGATAGAGGTTTTCAGATAGAGAAAGTAGAAGAAAATATACTTTAAAACATGGAATATATGGGCGTCCTAACTTTTAACTTCAAGACATTTTTTCTTGGTTCCTGTTAACGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATGATATAAGAAGTGTTTTGTCAGTTGACACAGTTTTAATATCTTGCATAGGAATCGAAATAATTGAGCTCAAACATCGCAGTGTGAGGGTTTACAGGTTTTACGGTAGAAAATTTTCCAGAGAATAAAAAAAAGCAAAACCAAAAAGTGATGGGTGGAGAAAAGGGAAATGAAACTGCTCCCCCGCCCCATCTCATCTCTTTTTCCCCTTCTCTTAGTTCGTCAAGTGCCCCCGGAAAAGCCCCCGCCGAAAAGAGGTCCGTTCGTCTAATGAGAGGAGCGTGTGGCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTCTTGGTCATCGAATCTT</pcr_primer_p1>
		<pcr_primer_p2>TGAAAACCTCTATCCTAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>GATTCTTGGTCATCGAATCTTGGCTCAAAGCGCAACGTGGCATTTACCAAATCGGCAACCATTGGAGCACACTTTTGAGCAGCGACAAGGTCGGGTCCTTCGCAATGGTTGATAGCAGTGAAGAGAGCGAAGAATGTGACAAAGATGGTGCCTCCGAAGATCACGAAACAGACGATTCCAGAGCAGAGGACACAGCAGAGAAATGCGCCAATCCAACCACAAACGCTGCAGCGCATGGTGTCTTCAATTTTAGGATAGAGGTTTTCA</canonical_amplicon>
		<polymorphic_amplicon>GATTCTTGGTCATCGAATCTTGGCTCAAAGCGCAACGTGGCATTTACCAAATCGGCAACCATTGGAGCACACTTTTGAGCAGCGACAAGGTCGGGTCCTTCGCAATGGTTGATAGCAGTGAAGAGAGCGAAGAATGTGACAAAGATGGTGCCTCCGAAGATCACGAAACAGACGATTCCAGAGCAGAGRACACAGCAGAGAAATGCGCCAATCCAACCACAAACGCTGCAGCGCATGGTGTCTTCAATTTTAGGATAGAGGTTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34633</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>317362</contig_pos>
        <strand></strand>
        <context>CATGGTGTCT[T/A]CAATTTTAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGCAGAGAAATGCGCCAATCCAACCACAAACGCTGCAGCGCATGGTGTCT</left_flank>
        <right_flank>CAATTTTAGGATAGAGGTTTTCAGATAGAGAAAGTAGAAGAAAATATACT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGAACAAGAAGTTCAGACATTCCACATTTCCTTCAGTTGCTTTCTTTTTGAGTTTCAGTGCGCATTGTCCGAACTCGTCCTTGATGAATGCAAAAACGTCGCACAATTTGCCGGTACGAATGAATTCAATACGGTAGCTGAGGCACTTGACATCTTTGATGCAACGCTGAAAAAAGTTAGGGTTATAGAAGAAATTAGACTTACGCCTACCGTAGTCTCTCCACACTGCTCGACCATCTTTTGCATGTGGTCCGATTCTTGGTCATCGAATCTTGGCTCAAAGCGCAACGTGGCATTTACCAAATCGGCAACCATTGGAGCACACTTTTGAGCAGCGACAAGGTCGGGTCCTTCGCAATGGTTGATAGCAGTGAAGAGAGCGAAGAATGTGACAAAGATGGTGCCTCCGAAGATCACGAAACAGACGATTCCAGAGCAGAGGACACAGCAGAGAAATGCGCCAATCCAACCACAAACGCTGCAGCGCATGGTGTCTTCAATTTTAGGATAGAGGTTTTCAGATAGAGAAAGTAGAAGAAAATATACTTTAAAACATGGAATATATGGGCGTCCTAACTTTTAACTTCAAGACATTTTTTCTTGGTTCCTGTTAACGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATGATATAAGAAGTGTTTTGTCAGTTGACACAGTTTTAATATCTTGCATAGGAATCGAAATAATTGAGCTCAAACATCGCAGTGTGAGGGTTTACAGGTTTTACGGTAGAAAATTTTCCAGAGAATAAAAAAAAGCAAAACCAAAAAGTGATGGGTGGAGAAAAGGGAAATGAAACTGCTCCCCCGCCCCATCTCATCTCTTTTTCCCCTTCTCTTAGTTCGTCAAGTGCCCCCGGAAAAGCCCCCGCCGAAAAGAGGTCCGTTCGTCTAATGAGAGGAGCGTGTGGCTCCTCCTCCATGGCATTCGAAGCACGCCACAAAAAAAGAGCATAAAGGGTAGAGGGGT</canonical>
            <polymorphic>TTTGGAACAAGAAGTTCAGACATTCCACATTTCCTTCAGTTGCTTTCTTTTTGAGTTTCAGTGCGCATTGTCCGAACTCGTCCTTGATGAATGCAAAAACGTCGCACAATTTGCCGGTACGAATGAATTCAATACGGTAGCTGAGGCACTTGACATCTTTGATGCAACGCTGAAAAAAGTTAGGGTTATAGAAGAAATTAGACTTACGCCTACCGTAGTCTCTCCACACTGCTCGACCATCTTTTGCATGTGGTCCGATTCTTGGTCATCGAATCTTGGCTCAAAGCGCAACGTGGCATTTACCAAATCGGCAACCATTGGAGCACACTTTTGAGCAGCGACAAGGTCGGGTCCTTCGCAATGGTTGATAGCAGTGAAGAGAGCGAAGAATGTGACAAAGATGGTGCCTCCGAAGATCACGAAACAGACGATTCCAGAGCAGAGGACACAGCAGAGAAATGCGCCAATCCAACCACAAACGCTGCAGCGCATGGTGTCTWCAATTTTAGGATAGAGGTTTTCAGATAGAGAAAGTAGAAGAAAATATACTTTAAAACATGGAATATATGGGCGTCCTAACTTTTAACTTCAAGACATTTTTTCTTGGTTCCTGTTAACGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATGATATAAGAAGTGTTTTGTCAGTTGACACAGTTTTAATATCTTGCATAGGAATCGAAATAATTGAGCTCAAACATCGCAGTGTGAGGGTTTACAGGTTTTACGGTAGAAAATTTTCCAGAGAATAAAAAAAAGCAAAACCAAAAAGTGATGGGTGGAGAAAAGGGAAATGAAACTGCTCCCCCGCCCCATCTCATCTCTTTTTCCCCTTCTCTTAGTTCGTCAAGTGCCCCCGGAAAAGCCCCCGCCGAAAAGAGGTCCGTTCGTCTAATGAGAGGAGCGTGTGGCTCCTCCTCCATGGCATTCGAAGCACGCCACAAAAAAAGAGCATAAAGGGTAGAGGGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCACGAAACAGACGATTC</pcr_primer_p1>
		<pcr_primer_p2>CACTTTTTGGTTTTGCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>390</pcr_amplicon_size>
		<canonical_amplicon>GATCACGAAACAGACGATTCCAGAGCAGAGGACACAGCAGAGAAATGCGCCAATCCAACCACAAACGCTGCAGCGCATGGTGTCTTCAATTTTAGGATAGAGGTTTTCAGATAGAGAAAGTAGAAGAAAATATACTTTAAAACATGGAATATATGGGCGTCCTAACTTTTAACTTCAAGACATTTTTTCTTGGTTCCTGTTAACGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATGATATAAGAAGTGTTTTGTCAGTTGACACAGTTTTAATATCTTGCATAGGAATCGAAATAATTGAGCTCAAACATCGCAGTGTGAGGGTTTACAGGTTTTACGGTAGAAAATTTTCCAGAGAATAAAAAAAAGCAAAACCAAAAAGTG</canonical_amplicon>
		<polymorphic_amplicon>GATCACGAAACAGACGATTCCAGAGCAGAGGACACAGCAGAGAAATGCGCCAATCCAACCACAAACGCTGCAGCGCATGGTGTCTWCAATTTTAGGATAGAGGTTTTCAGATAGAGAAAGTAGAAGAAAATATACTTTAAAACATGGAATATATGGGCGTCCTAACTTTTAACTTCAAGACATTTTTTCTTGGTTCCTGTTAACGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATGATATAAGAAGTGTTTTGTCAGTTGACACAGTTTTAATATCTTGCATAGGAATCGAAATAATTGAGCTCAAACATCGCAGTGTGAGGGTTTACAGGTTTTACGGTAGAAAATTTTCCAGAGAATAAAAAAAAGCAAAACCAAAAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34634</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>317413</contig_pos>
        <strand></strand>
        <context>AAAATATact[T/G]taaaacmtgg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CAATTTTAGGATAGAGGTTTTCAGATAGAGAAAGTAGAAGAAAATATACT</left_flank>
        <right_flank>TAAAACATGGAATATATGGGCGTCCTAACTTTTAACTTCAAGACATTTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGTTTCAGTGCGCATTGTCCGAACTCGTCCTTGATGAATGCAAAAACGTCGCACAATTTGCCGGTACGAATGAATTCAATACGGTAGCTGAGGCACTTGACATCTTTGATGCAACGCTGAAAAAAGTTAGGGTTATAGAAGAAATTAGACTTACGCCTACCGTAGTCTCTCCACACTGCTCGACCATCTTTTGCATGTGGTCCGATTCTTGGTCATCGAATCTTGGCTCAAAGCGCAACGTGGCATTTACCAAATCGGCAACCATTGGAGCACACTTTTGAGCAGCGACAAGGTCGGGTCCTTCGCAATGGTTGATAGCAGTGAAGAGAGCGAAGAATGTGACAAAGATGGTGCCTCCGAAGATCACGAAACAGACGATTCCAGAGCAGAGGACACAGCAGAGAAATGCGCCAATCCAACCACAAACGCTGCAGCGCATGGTGTCTTCAATTTTAGGATAGAGGTTTTCAGATAGAGAAAGTAGAAGAAAATATACTTTAAAACATGGAATATATGGGCGTCCTAACTTTTAACTTCAAGACATTTTTTCTTGGTTCCTGTTAACGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATGATATAAGAAGTGTTTTGTCAGTTGACACAGTTTTAATATCTTGCATAGGAATCGAAATAATTGAGCTCAAACATCGCAGTGTGAGGGTTTACAGGTTTTACGGTAGAAAATTTTCCAGAGAATAAAAAAAAGCAAAACCAAAAAGTGATGGGTGGAGAAAAGGGAAATGAAACTGCTCCCCCGCCCCATCTCATCTCTTTTTCCCCTTCTCTTAGTTCGTCAAGTGCCCCCGGAAAAGCCCCCGCCGAAAAGAGGTCCGTTCGTCTAATGAGAGGAGCGTGTGGCTCCTCCTCCATGGCATTCGAAGCACGCCACAAAAAAAGAGCATAAAGGGTAGAGGGGTTTTATGGTGATGTGTCCTCTCCGGTCCCTTTCGGTGCCAGTGGCTTTGGAA</canonical>
            <polymorphic>TGAGTTTCAGTGCGCATTGTCCGAACTCGTCCTTGATGAATGCAAAAACGTCGCACAATTTGCCGGTACGAATGAATTCAATACGGTAGCTGAGGCACTTGACATCTTTGATGCAACGCTGAAAAAAGTTAGGGTTATAGAAGAAATTAGACTTACGCCTACCGTAGTCTCTCCACACTGCTCGACCATCTTTTGCATGTGGTCCGATTCTTGGTCATCGAATCTTGGCTCAAAGCGCAACGTGGCATTTACCAAATCGGCAACCATTGGAGCACACTTTTGAGCAGCGACAAGGTCGGGTCCTTCGCAATGGTTGATAGCAGTGAAGAGAGCGAAGAATGTGACAAAGATGGTGCCTCCGAAGATCACGAAACAGACGATTCCAGAGCAGAGGACACAGCAGAGAAATGCGCCAATCCAACCACAAACGCTGCAGCGCATGGTGTCTTCAATTTTAGGATAGAGGTTTTCAGATAGAGAAAGTAGAAGAAAATATACTKTAAAACATGGAATATATGGGCGTCCTAACTTTTAACTTCAAGACATTTTTTCTTGGTTCCTGTTAACGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATGATATAAGAAGTGTTTTGTCAGTTGACACAGTTTTAATATCTTGCATAGGAATCGAAATAATTGAGCTCAAACATCGCAGTGTGAGGGTTTACAGGTTTTACGGTAGAAAATTTTCCAGAGAATAAAAAAAAGCAAAACCAAAAAGTGATGGGTGGAGAAAAGGGAAATGAAACTGCTCCCCCGCCCCATCTCATCTCTTTTTCCCCTTCTCTTAGTTCGTCAAGTGCCCCCGGAAAAGCCCCCGCCGAAAAGAGGTCCGTTCGTCTAATGAGAGGAGCGTGTGGCTCCTCCTCCATGGCATTCGAAGCACGCCACAAAAAAAGAGCATAAAGGGTAGAGGGGTTTTATGGTGATGTGTCCTCTCCGGTCCCTTTCGGTGCCAGTGGCTTTGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>500 361 76 32 31</canonical_bands>
                <polymorphic_bands>532 361 76 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCACGAAACAGACGATTC</pcr_primer_p1>
		<pcr_primer_p2>CACTTTTTGGTTTTGCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>390</pcr_amplicon_size>
		<canonical_amplicon>GATCACGAAACAGACGATTCCAGAGCAGAGGACACAGCAGAGAAATGCGCCAATCCAACCACAAACGCTGCAGCGCATGGTGTCTTCAATTTTAGGATAGAGGTTTTCAGATAGAGAAAGTAGAAGAAAATATACTTTAAAACATGGAATATATGGGCGTCCTAACTTTTAACTTCAAGACATTTTTTCTTGGTTCCTGTTAACGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATGATATAAGAAGTGTTTTGTCAGTTGACACAGTTTTAATATCTTGCATAGGAATCGAAATAATTGAGCTCAAACATCGCAGTGTGAGGGTTTACAGGTTTTACGGTAGAAAATTTTCCAGAGAATAAAAAAAAGCAAAACCAAAAAGTG</canonical_amplicon>
		<polymorphic_amplicon>GATCACGAAACAGACGATTCCAGAGCAGAGGACACAGCAGAGAAATGCGCCAATCCAACCACAAACGCTGCAGCGCATGGTGTCTTCAATTTTAGGATAGAGGTTTTCAGATAGAGAAAGTAGAAGAAAATATACTKTAAAACATGGAATATATGGGCGTCCTAACTTTTAACTTCAAGACATTTTTTCTTGGTTCCTGTTAACGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATGATATAAGAAGTGTTTTGTCAGTTGACACAGTTTTAATATCTTGCATAGGAATCGAAATAATTGAGCTCAAACATCGCAGTGTGAGGGTTTACAGGTTTTACGGTAGAAAATTTTCCAGAGAATAAAAAAAAGCAAAACCAAAAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34635</snp_id>
        <super_contig>c009300516.Contig3</super_contig>
        <contig_pos>317420</contig_pos>
        <strand></strand>
        <context>actktaaaac[A/C]tggaatatat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGGATAGAGGTTTTCAGATAGAGAAAGTAGAAGAAAATATACTTTAAAAC</left_flank>
        <right_flank>TGGAATATATGGGCGTCCTAACTTTTAACTTCAAGACATTTTTTCTTGGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTGCGCATTGTCCGAACTCGTCCTTGATGAATGCAAAAACGTCGCACAATTTGCCGGTACGAATGAATTCAATACGGTAGCTGAGGCACTTGACATCTTTGATGCAACGCTGAAAAAAGTTAGGGTTATAGAAGAAATTAGACTTACGCCTACCGTAGTCTCTCCACACTGCTCGACCATCTTTTGCATGTGGTCCGATTCTTGGTCATCGAATCTTGGCTCAAAGCGCAACGTGGCATTTACCAAATCGGCAACCATTGGAGCACACTTTTGAGCAGCGACAAGGTCGGGTCCTTCGCAATGGTTGATAGCAGTGAAGAGAGCGAAGAATGTGACAAAGATGGTGCCTCCGAAGATCACGAAACAGACGATTCCAGAGCAGAGGACACAGCAGAGAAATGCGCCAATCCAACCACAAACGCTGCAGCGCATGGTGTCTTCAATTTTAGGATAGAGGTTTTCAGATAGAGAAAGTAGAAGAAAATATACTTTAAAACATGGAATATATGGGCGTCCTAACTTTTAACTTCAAGACATTTTTTCTTGGTTCCTGTTAACGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATGATATAAGAAGTGTTTTGTCAGTTGACACAGTTTTAATATCTTGCATAGGAATCGAAATAATTGAGCTCAAACATCGCAGTGTGAGGGTTTACAGGTTTTACGGTAGAAAATTTTCCAGAGAATAAAAAAAAGCAAAACCAAAAAGTGATGGGTGGAGAAAAGGGAAATGAAACTGCTCCCCCGCCCCATCTCATCTCTTTTTCCCCTTCTCTTAGTTCGTCAAGTGCCCCCGGAAAAGCCCCCGCCGAAAAGAGGTCCGTTCGTCTAATGAGAGGAGCGTGTGGCTCCTCCTCCATGGCATTCGAAGCACGCCACAAAAAAAGAGCATAAAGGGTAGAGGGGTTTTATGGTGATGTGTCCTCTCCGGTCCCTTTCGGTGCCAGTGGCTTTGGAAGAAGAAG</canonical>
            <polymorphic>CAGTGCGCATTGTCCGAACTCGTCCTTGATGAATGCAAAAACGTCGCACAATTTGCCGGTACGAATGAATTCAATACGGTAGCTGAGGCACTTGACATCTTTGATGCAACGCTGAAAAAAGTTAGGGTTATAGAAGAAATTAGACTTACGCCTACCGTAGTCTCTCCACACTGCTCGACCATCTTTTGCATGTGGTCCGATTCTTGGTCATCGAATCTTGGCTCAAAGCGCAACGTGGCATTTACCAAATCGGCAACCATTGGAGCACACTTTTGAGCAGCGACAAGGTCGGGTCCTTCGCAATGGTTGATAGCAGTGAAGAGAGCGAAGAATGTGACAAAGATGGTGCCTCCGAAGATCACGAAACAGACGATTCCAGAGCAGAGGACACAGCAGAGAAATGCGCCAATCCAACCACAAACGCTGCAGCGCATGGTGTCTTCAATTTTAGGATAGAGGTTTTCAGATAGAGAAAGTAGAAGAAAATATACTTTAAAACMTGGAATATATGGGCGTCCTAACTTTTAACTTCAAGACATTTTTTCTTGGTTCCTGTTAACGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATGATATAAGAAGTGTTTTGTCAGTTGACACAGTTTTAATATCTTGCATAGGAATCGAAATAATTGAGCTCAAACATCGCAGTGTGAGGGTTTACAGGTTTTACGGTAGAAAATTTTCCAGAGAATAAAAAAAAGCAAAACCAAAAAGTGATGGGTGGAGAAAAGGGAAATGAAACTGCTCCCCCGCCCCATCTCATCTCTTTTTCCCCTTCTCTTAGTTCGTCAAGTGCCCCCGGAAAAGCCCCCGCCGAAAAGAGGTCCGTTCGTCTAATGAGAGGAGCGTGTGGCTCCTCCTCCATGGCATTCGAAGCACGCCACAAAAAAAGAGCATAAAGGGTAGAGGGGTTTTATGGTGATGTGTCCTCTCCGGTCCCTTTCGGTGCCAGTGGCTTTGGAAGAAGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>297 243 189 107 97 67</canonical_bands>
                <polymorphic_bands>297 243 189 164 107</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATTTTAGGATAGAGGTTTTCA</pcr_primer_p1>
		<pcr_primer_p2>CACTTTTTGGTTTTGCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>304</pcr_amplicon_size>
		<canonical_amplicon>CAATTTTAGGATAGAGGTTTTCAGATAGAGAAAGTAGAAGAAAATATACTTTAAAACATGGAATATATGGGCGTCCTAACTTTTAACTTCAAGACATTTTTTCTTGGTTCCTGTTAACGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATGATATAAGAAGTGTTTTGTCAGTTGACACAGTTTTAATATCTTGCATAGGAATCGAAATAATTGAGCTCAAACATCGCAGTGTGAGGGTTTACAGGTTTTACGGTAGAAAATTTTCCAGAGAATAAAAAAAAGCAAAACCAAAAAGTG</canonical_amplicon>
		<polymorphic_amplicon>CAATTTTAGGATAGAGGTTTTCAGATAGAGAAAGTAGAAGAAAATATACTTTAAAACMTGGAATATATGGGCGTCCTAACTTTTAACTTCAAGACATTTTTTCTTGGTTCCTGTTAACGATATGAAAAAGTTGTCAACTGATAAATTGTTTATCATGATATAAGAAGTGTTTTGTCAGTTGACACAGTTTTAATATCTTGCATAGGAATCGAAATAATTGAGCTCAAACATCGCAGTGTGAGGGTTTACAGGTTTTACGGTAGAAAATTTTCCAGAGAATAAAAAAAAGCAAAACCAAAAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34636</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>83688</contig_pos>
        <strand></strand>
        <context>tcaaatcacg[G/C]cgaaggtcca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AAAGAGAAATCAAAAAGTGACGAACAGTAAAGTAAATAGGTCAAATCACG</left_flank>
        <right_flank>CGAAGGTCCACCAGCCAGCTGTTCGAAGCGCGGGAGGCACTGCAAACAGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAAAAGAAGCCATGAATACGCTTTTTATTTTCATTTCATTTCTTTTAATCTTTGATTGGATCTTTTTTGAAAAGGGGACGTTCAGTGGATTCCACCTAGCCAATAACCCCAAAACATGGCGACCCTTGTTAGGGCCTTCTAGTACTTTTTTCGCAATCGACCAATCGAAAGATCAAAAAGAAAATGAACCAAAAAGAAAAAGCGTAATGCATAGAGATTCTTACCAGTGAGAAAGTGCTTGTGAATATTATCCAACAATACATTTCAAAGAGTCTGATTTCACAGGGAACTGGTTTTTTCAATACGTGGAATTTTTAACATGGACAGAAGGAGCGGGCGTGACCTTATTTTAACTGATTTATTTATTTATTGCGTAACGTAAATGAACAATTTTCCAAATATTTTTGAGAAACTTGAAAATCAATATAATTTGACGTGACCTTTTGAAAAAGAGAAATCAAAAAGTGACGAACAGTAAAGTAAATAGGTCAAATCACGGCGAAGGTCCACCAGCCAGCTGTTCGAAGCGCGGGAGGCACTGCAAACAGGCTGGTATCAAATAAAGCAGAAAATCTGGGATGAAAAATAAGTATTTGTCTGAGAAATGAATCTCTCTGAAAATTTAAAACTAGATGGGAGAAATTTCTGATTTTGATTCTGCTCTCACGCTAAAGACACAAAAAATTGAAGTCGAGTGCTGGAACTGCCAAAATAAAGATCATTGGAAGATCTTTGTGAACAAAAGTCATTTATGATAAAAAAATTTTGCCAAGTTATTTTGTGAAATCTTGAGAAATCTTCAGGAAAAAGAACACAATGAATCCGATTTTTCCATATCTCCTTCAAGCATTCTGCATTTTTCCACTAACGGGTTTTCAATTTTATTGCCCTTTTTTCAAAAGCCTCGAGCATCTGAATTTTCCCGAACATCAATAACGATAACAAAAACAAATAAATTATGGGTACTGTACTTATTCACTTCTTTCTTGTTATTCAATT</canonical>
            <polymorphic>CGAAAAGAAGCCATGAATACGCTTTTTATTTTCATTTCATTTCTTTTAATCTTTGATTGGATCTTTTTTGAAAAGGGGACGTTCAGTGGATTCCACCTAGCCAATAACCCCAAAACATGGCGACCCTTGTTAGGGCCTTCTAGTACTTTTTTCGCAATCGACCAATCGAAAGATCAAAAAGAAAATGAACCAAAAAGAAAAAGCGTAATGCATAGAGATTCTTACCAGTGAGAAAGTGCTTGTGAATATTATCCAACAATACATTTCAAAGAGTCTGATTTCACAGGGAACTGGTTTTTTCAATACGTGGAATTTTTAACATGGACAGAAGGAGCGGGCGTGACCTTATTTTAACTGATTTATTTATTTATTGCGTAACGTAAATGAACAATTTTCCAAATATTTTTGAGAAACTTGAAAATCAATATAATTTGACGTGACCTTTTGAAAAAGAGAAATCAAAAAGTGACGAACAGTAAAGTAAATAGGTCAAATCACGSCGAAGGTCCACCAGCCAGCTGTTCGAAGCGCGGGAGGCACTGCAAACAGGCTGGTATCAAATAAAGCAGAAAATCTGGGATGAAAAATAAGTATTTGTCTGAGAAATGAATCTCTCTGAAAATTTAAAACTAGATGGGAGAAATTTCTGATTTTGATTCTGCTCTCACGCTAAAGACACAAAAAATTGAAGTCGAGTGCTGGAACTGCCAAAATAAAGATCATTGGAAGATCTTTGTGAACAAAAGTCATTTATGATAAAAAAATTTTGCCAAGTTATTTTGTGAAATCTTGAGAAATCTTCAGGAAAAAGAACACAATGAATCCGATTTTTCCATATCTCCTTCAAGCATTCTGCATTTTTCCACTAACGGGTTTTCAATTTTATTGCCCTTTTTTCAAAAGCCTCGAGCATCTGAATTTTCCCGAACATCAATAACGATAACAAAAACAAATAAATTATGGGTACTGTACTTATTCACTTCTTTCTTGTTATTCAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATCCAGAATATCCAAACCT</pcr_primer_p1>
		<pcr_primer_p2>CCAGATTTTCTGCTTTATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>753</pcr_amplicon_size>
		<canonical_amplicon>GGCGAAGGTCCACCAGCCAGCTGTTCGAAGCGCGGGAGGCACTGCAAACAGGCTGGTATCAAATAAAGCAGAAAATCTGG</canonical_amplicon>
		<polymorphic_amplicon>GSCGAAGGTCCACCAGCCAGCTGTTCGAAGCGCGGGAGGCACTGCAAACAGGCTGGTATCAAATAAAGCAGAAAATCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34637</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>84077</contig_pos>
        <strand>+</strand>
        <context>AATTTTATTG[C/T]CCTTTTTTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCCTTCAAGCATTCTGCATTTTTCCACTAACGGGTTTTCAATTTTATTG</left_flank>
        <right_flank>CCTTTTTTCAAAAGCCTCGAGCATCTGAATTTTCCCGAACATCAATAACG</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTCCAAATATTTTTGAGAAACTTGAAAATCAATATAATTTGACGTGACCTTTTGAAAAAGAGAAATCAAAAAGTGACGAACAGTAAAGTAAATAGGTCAAATCACGGCGAAGGTCCACCAGCCAGCTGTTCGAAGCGCGGGAGGCACTGCAAACAGGCTGGTATCAAATAAAGCAGAAAATCTGGGATGAAAAATAAGTATTTGTCTGAGAAATGAATCTCTCTGAAAATTTAAAACTAGATGGGAGAAATTTCTGATTTTGATTCTGCTCTCACGCTAAAGACACAAAAAATTGAAGTCGAGTGCTGGAACTGCCAAAATAAAGATCATTGGAAGATCTTTGTGAACAAAAGTCATTTATGATAAAAAAATTTTGCCAAGTTATTTTGTGAAATCTTGAGAAATCTTCAGGAAAAAGAACACAATGAATCCGATTTTTCCATATCTCCTTCAAGCATTCTGCATTTTTCCACTAACGGGTTTTCAATTTTATTGCCCTTTTTTCAAAAGCCTCGAGCATCTGAATTTTCCCGAACATCAATAACGATAACAAAAACAAATAAATTATGGGTACTGTACTTATTCACTTCTTTCTTGTTATTCAATTTTTTGATGTTTTGGCAGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGAAAACTGGCCGGTAATTTGTCGGATCTTGGTCAGCTTCCCACAATATCTTTGCCGGAATCTGACCAATCTCCGGCCAGAAGTAACTGGCGACGCCTTAGCTAAGCTGATATTTAAACCCCTTATTATCCATTCCTCACTATTTCTCAATTTTCGACAGAGACCAGGTGCCTTTGGCACCGGGCCAATGGTTATGGTAATGCCATTCGACACTTTGGATATGCTCTCTATCTCTATCTCTCGTTCTCCCACCTCTGACTTCTTCATCATCTTTTTCTTCTTTCCGCCTGCTCGCCTTTTCCCAGTAACTTGTAGAACGCTTCCTCTTTCCTCATCACCAGAC</canonical>
            <polymorphic>AATTTTCCAAATATTTTTGAGAAACTTGAAAATCAATATAATTTGACGTGACCTTTTGAAAAAGAGAAATCAAAAAGTGACGAACAGTAAAGTAAATAGGTCAAATCACGGCGAAGGTCCACCAGCCAGCTGTTCGAAGCGCGGGAGGCACTGCAAACAGGCTGGTATCAAATAAAGCAGAAAATCTGGGATGAAAAATAAGTATTTGTCTGAGAAATGAATCTCTCTGAAAATTTAAAACTAGATGGGAGAAATTTCTGATTTTGATTCTGCTCTCACGCTAAAGACACAAAAAATTGAAGTCGAGTGCTGGAACTGCCAAAATAAAGATCATTGGAAGATCTTTGTGAACAAAAGTCATTTATGATAAAAAAATTTTGCCAAGTTATTTTGTGAAATCTTGAGAAATCTTCAGGAAAAAGAACACAATGAATCCGATTTTTCCATATCTCCTTCAAGCATTCTGCATTTTTCCACTAACGGGTTTTCAATTTTATTGYCCTTTTTTCAAAAGCCTCGAGCATCTGAATTTTCCCGAACATCAATAACGATAACAAAAACAAATAAATTATGGGTACTGTACTTATTCACTTCTTTCTTGTTATTCAATTTTTTGATGTTTTGGCAGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGAAAACTGGCCGGTAATTTGTCGGATCTTGGTCAGCTTCCCACAATATCTTTGCCGGAATCTGACCAATCTCCGGCCAGAAGTAACTGGCGACGCCTTAGCTAAGCTGATATTTAAACCCCTTATTATCCATTCCTCACTATTTCTCAATTTTCGACAGAGACCAGGTGCCTTTGGCACCGGGCCAATGGTTATGGTAATGCCATTCGACACTTTGGATATGCTCTCTATCTCTATCTCTCGTTCTCCCACCTCTGACTTCTTCATCATCTTTTTCTTCTTTCCGCCTGCTCGCCTTTTCCCAGTAACTTGTAGAACGCTTCCTCTTTCCTCATCACCAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATCATTGGAAGATCTTTGTG</pcr_primer_p1>
		<pcr_primer_p2>ACCCATAATTTATTTGTTTTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGATCATTGGAAGATCTTTGTGAACAAAAGTCATTTATGATAAAAAAATTTTGCCAAGTTATTTTGTGAAATCTTGAGAAATCTTCAGGAAAAAGAACACAATGAATCCGATTTTTCCATATCTCCTTCAAGCATTCTGCATTTTTCCACTAACGGGTTTTCAATTTTATTGCCCTTTTTTCAAAAGCCTCGAGCATCTGAATTTTCCCGAACATCAATAACGATAACAAAAACAAATAAATTATGGGT</canonical_amplicon>
		<polymorphic_amplicon>AGATCATTGGAAGATCTTTGTGAACAAAAGTCATTTATGATAAAAAAATTTTGCCAAGTTATTTTGTGAAATCTTGAGAAATCTTCAGGAAAAAGAACACAATGAATCCGATTTTTCCATATCTCCTTCAAGCATTCTGCATTTTTCCACTAACGGGTTTTCAATTTTATTGYCCTTTTTTCAAAAGCCTCGAGCATCTGAATTTTCCCGAACATCAATAACGATAACAAAAACAAATAAATTATGGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34638</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>236164</contig_pos>
        <strand>+</strand>
        <context>GGTAGAGACT[A/T]GTTCCAGTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGTAAGAGAAAAGAAGCTTGGTCGGGATGAATAGAGATGGGTAGAGACT</left_flank>
        <right_flank>GTTCCAGTTACTGTAAACTTGAAATGTTTACTTCTTTGAACTTGGAGTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGTCGTGTATTGCGAAAAGAGATGGCAACGTCTGGATGGGCAGAACTAAGAAAACGTGAAAATTAACTAAAAGCAAAACAACTTGAAGCAATGCTTTTCCGATGAAGCCGTCAATAGCTTAACGGTCGAACCGGTTCTCGCTTTCTATGGGATATAAAGATTTTGCGTCATTCCACTCTTTTTATAGCCAAAAACAGAAACACTAGTCACGATATAAAGTCAAAAATGGAACATTTTGAAAATTCCCGATATGCAAATGATACAATTCATACTACAGTTGATTTCCTTCTTCATTCCCTCCCACTGAGCGTCGTCTCGAAGTCTTCTCTCTCGGAACGCCATTATCTCTAGCCAGTGTGACCCCGATCCGGTCGCTTACCGTCACAAAATGTGGTGTTGAGAGGGAAAAGGAAGGAAAAAGAGGAAGAAACTGAATAGAGTAGTTTGGAGTAAGAGAAAAGAAGCTTGGTCGGGATGAATAGAGATGGGTAGAGACTTGTTCCAGTTACTGTAAACTTGAAATGTTTACTTCTTTGAACTTGGAGTAATACTGAAGATTATGTTTTTCAGGATAATGAAACTACTCAAAAAGTCCAGCTCTCTCAAAAAAGGAGTGACGAAACGCGCCAAACTCCAAAAGAAACCTCCATCTAAAGATGAAGCATCTTCTTCAGATGAGGAGTTGGCCAAGTTGGATGGAGAAGGAAGCTTAGATGGGAACGAATCGGAAGAGGATGACGGAACGGTGCAAGTTGAGAAAGGTGGAATGAAAAAACACAAGTTGGATTTGGAAGCGTAAGCTTGTTTTCATTAGAGACTATTCTTCATTTGTTATTTACAGACTGAAAAAGAGTGATCCAGAATTCTTCAAATTTCTTCAACAAGAGGATGCTGATCTTTTGAATATGGAAGAGGATGAGGATGACGATGAAGAGGGAGAAGACAATGAGGATGAAGAAGATGAAGAAGAAGAGGAGGAAAGTGATGAAGATGACGAT</canonical>
            <polymorphic>TTCGTCGTGTATTGCGAAAAGAGATGGCAACGTCTGGATGGGCAGAACTAAGAAAACGTGAAAATTAACTAAAAGCAAAACAACTTGAAGCAATGCTTTTCCGATGAAGCCGTCAATAGCTTAACGGTCGAACCGGTTCTCGCTTTCTATGGGATATAAAGATTTTGCGTCATTCCACTCTTTTTATAGCCAAAAACAGAAACACTAGTCACGATATAAAGTCAAAAATGGAACATTTTGAAAATTCCCGATATGCAAATGATACAATTCATACTACAGTTGATTTCCTTCTTCATTCCCTCCCACTGAGCGTCGTCTCGAAGTCTTCTCTCTCGGAACGCCATTATCTCTAGCCAGTGTGACCCCGATCCGGTCGCTTACCGTCACAAAATGTGGTGTTGAGAGGGAAAAGGAAGGAAAAAGAGGAAGAAACTGAATAGAGTAGTTTGGAGTAAGAGAAAAGAAGCTTGGTCGGGATGAATAGAGATGGGTAGAGACTWGTTCCAGTTACTGTAAACTTGAAATGTTTACTTCTTTGAACTTGGAGTAATACTGAAGATTATGTTTTTCAGGATAATGAAACTACTCAAAAAGTCCAGCTCTCTCAAAAAAGGAGTGACGAAACGCGCCAAACTCCAAAAGAAACCTCCATCTAAAGATGAAGCATCTTCTTCAGATGAGGAGTTGGCCAAGTTGGATGGAGAAGGAAGCTTAGATGGGAACGAATCGGAAGAGGATGACGGAACGGTGCAAGTTGAGAAAGGTGGAATGAAAAAACACAAGTTGGATTTGGAAGCGTAAGCTTGTTTTCATTAGAGACTATTCTTCATTTGTTATTTACAGACTGAAAAAGAGTGATCCAGAATTCTTCAAATTTCTTCAACAAGAGGATGCTGATCTTTTGAATATGGAAGAGGATGAGGATGACGATGAAGAGGGAGAAGACAATGAGGATGAAGAAGATGAAGAAGAAGAGGAGGAAAGTGATGAAGATGACGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAAGAGGAAGAAACTGAATAG</pcr_primer_p1>
		<pcr_primer_p2>TTCATCTTTAGATGGAGGTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAAAAGAGGAAGAAACTGAATAGAGTAGTTTGGAGTAAGAGAAAAGAAGCTTGGTCGGGATGAATAGAGATGGGTAGAGACTTGTTCCAGTTACTGTAAACTTGAAATGTTTACTTCTTTGAACTTGGAGTAATACTGAAGATTATGTTTTTCAGGATAATGAAACTACTCAAAAAGTCCAGCTCTCTCAAAAAAGGAGTGACGAAACGCGCCAAACTCCAAAAGAAACCTCCATCTAAAGATGAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAAGAGGAAGAAACTGAATAGAGTAGTTTGGAGTAAGAGAAAAGAAGCTTGGTCGGGATGAATAGAGATGGGTAGAGACTWGTTCCAGTTACTGTAAACTTGAAATGTTTACTTCTTTGAACTTGGAGTAATACTGAAGATTATGTTTTTCAGGATAATGAAACTACTCAAAAAGTCCAGCTCTCTCAAAAAAGGAGTGACGAAACGCGCCAAACTCCAAAAGAAACCTCCATCTAAAGATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34639</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>236223</contig_pos>
        <strand>+</strand>
        <context>AATACTGAAG[A/C]TTATGTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TACTGTAAACTTGAAATGTTTACTTCTTTGAACTTGGAGTAATACTGAAG</left_flank>
        <right_flank>TTATGTTTTTCAGGATAATGAAACTACTCAAAAAGTCCAGCTCTCTCAAA</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAATTAACTAAAAGCAAAACAACTTGAAGCAATGCTTTTCCGATGAAGCCGTCAATAGCTTAACGGTCGAACCGGTTCTCGCTTTCTATGGGATATAAAGATTTTGCGTCATTCCACTCTTTTTATAGCCAAAAACAGAAACACTAGTCACGATATAAAGTCAAAAATGGAACATTTTGAAAATTCCCGATATGCAAATGATACAATTCATACTACAGTTGATTTCCTTCTTCATTCCCTCCCACTGAGCGTCGTCTCGAAGTCTTCTCTCTCGGAACGCCATTATCTCTAGCCAGTGTGACCCCGATCCGGTCGCTTACCGTCACAAAATGTGGTGTTGAGAGGGAAAAGGAAGGAAAAAGAGGAAGAAACTGAATAGAGTAGTTTGGAGTAAGAGAAAAGAAGCTTGGTCGGGATGAATAGAGATGGGTAGAGACTTGTTCCAGTTACTGTAAACTTGAAATGTTTACTTCTTTGAACTTGGAGTAATACTGAAGATTATGTTTTTCAGGATAATGAAACTACTCAAAAAGTCCAGCTCTCTCAAAAAAGGAGTGACGAAACGCGCCAAACTCCAAAAGAAACCTCCATCTAAAGATGAAGCATCTTCTTCAGATGAGGAGTTGGCCAAGTTGGATGGAGAAGGAAGCTTAGATGGGAACGAATCGGAAGAGGATGACGGAACGGTGCAAGTTGAGAAAGGTGGAATGAAAAAACACAAGTTGGATTTGGAAGCGTAAGCTTGTTTTCATTAGAGACTATTCTTCATTTGTTATTTACAGACTGAAAAAGAGTGATCCAGAATTCTTCAAATTTCTTCAACAAGAGGATGCTGATCTTTTGAATATGGAAGAGGATGAGGATGACGATGAAGAGGGAGAAGACAATGAGGATGAAGAAGATGAAGAAGAAGAGGAGGAAAGTGATGAAGATGACGATGAAGAGGATGACGACAAAACAAAGATCAAGAAGATCCGAAAGCCAAAAGTGAAAAGCGA</canonical>
            <polymorphic>GAAAATTAACTAAAAGCAAAACAACTTGAAGCAATGCTTTTCCGATGAAGCCGTCAATAGCTTAACGGTCGAACCGGTTCTCGCTTTCTATGGGATATAAAGATTTTGCGTCATTCCACTCTTTTTATAGCCAAAAACAGAAACACTAGTCACGATATAAAGTCAAAAATGGAACATTTTGAAAATTCCCGATATGCAAATGATACAATTCATACTACAGTTGATTTCCTTCTTCATTCCCTCCCACTGAGCGTCGTCTCGAAGTCTTCTCTCTCGGAACGCCATTATCTCTAGCCAGTGTGACCCCGATCCGGTCGCTTACCGTCACAAAATGTGGTGTTGAGAGGGAAAAGGAAGGAAAAAGAGGAAGAAACTGAATAGAGTAGTTTGGAGTAAGAGAAAAGAAGCTTGGTCGGGATGAATAGAGATGGGTAGAGACTTGTTCCAGTTACTGTAAACTTGAAATGTTTACTTCTTTGAACTTGGAGTAATACTGAAGMTTATGTTTTTCAGGATAATGAAACTACTCAAAAAGTCCAGCTCTCTCAAAAAAGGAGTGACGAAACGCGCCAAACTCCAAAAGAAACCTCCATCTAAAGATGAAGCATCTTCTTCAGATGAGGAGTTGGCCAAGTTGGATGGAGAAGGAAGCTTAGATGGGAACGAATCGGAAGAGGATGACGGAACGGTGCAAGTTGAGAAAGGTGGAATGAAAAAACACAAGTTGGATTTGGAAGCGTAAGCTTGTTTTCATTAGAGACTATTCTTCATTTGTTATTTACAGACTGAAAAAGAGTGATCCAGAATTCTTCAAATTTCTTCAACAAGAGGATGCTGATCTTTTGAATATGGAAGAGGATGAGGATGACGATGAAGAGGGAGAAGACAATGAGGATGAAGAAGATGAAGAAGAAGAGGAGGAAAGTGATGAAGATGACGATGAAGAGGATGACGACAAAACAAAGATCAAGAAGATCCGAAAGCCAAAAGTGAAAAGCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAAGAGGAAGAAACTGAATAG</pcr_primer_p1>
		<pcr_primer_p2>TTCATCTTTAGATGGAGGTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAAAAGAGGAAGAAACTGAATAGAGTAGTTTGGAGTAAGAGAAAAGAAGCTTGGTCGGGATGAATAGAGATGGGTAGAGACTTGTTCCAGTTACTGTAAACTTGAAATGTTTACTTCTTTGAACTTGGAGTAATACTGAAGATTATGTTTTTCAGGATAATGAAACTACTCAAAAAGTCCAGCTCTCTCAAAAAAGGAGTGACGAAACGCGCCAAACTCCAAAAGAAACCTCCATCTAAAGATGAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAAGAGGAAGAAACTGAATAGAGTAGTTTGGAGTAAGAGAAAAGAAGCTTGGTCGGGATGAATAGAGATGGGTAGAGACTTGTTCCAGTTACTGTAAACTTGAAATGTTTACTTCTTTGAACTTGGAGTAATACTGAAGMTTATGTTTTTCAGGATAATGAAACTACTCAAAAAGTCCAGCTCTCTCAAAAAAGGAGTGACGAAACGCGCCAAACTCCAAAAGAAACCTCCATCTAAAGATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34640</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>281865</contig_pos>
        <strand>+</strand>
        <context>TTCGCTTTCA[A/C]CCAAGGCGCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCACCCTTTTGTTTTCCAATTCCATTTTTTTCTTCTTTTTTCGCTTTCA</left_flank>
        <right_flank>CCAAGGCGCCGTCCGTCCATCAGACGGACGGACGGACACTATATAAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTCCTCTTCTGTAACACAATCTCCATTCTAATAACACAAACAAAAAAACTTTTTTTGAAAACGATAAAAGTTTTCAATATTTGAATTGTTCAGTTCGAGACCCATAGTCAGTTTAATGTCTCAGTTTGCCGACCGTTTTGCCAAAAAGGAAATAAAAAGTTGAACTTTGAAAAAAAAGAAAAGAATAAGAAAAACGGGTTCGGTCATCTGGTCAGAATCAACAAATAAAACTGATAAAAGCAAAAAATTCGTCGGGGTGGTCTTAAATTTTTTTTTGGGTTTGTTTGAATAGGAAAAATTTATATAAAGTATCGGAATCTATAATTTCTGAATTCCCAACTCGGGCGTTTCCCCTTGAAAAGAACGTTTCTACGATATTTTCAATCTAAATTTCCAGTTTCTTCTTCCTCCCACATCATCTTCTCCGACCCCACATTTATACAGCTTGCACCCTTTTGTTTTCCAATTCCATTTTTTTCTTCTTTTTTCGCTTTCAACCAAGGCGCCGTCCGTCCATCAGACGGACGGACGGACACTATATAAATTTCTGGACGACGCTTTTTTCTTCTTCTCCTTCTTCTTCCTTCTTGTCTTCCAGATGCGCCTTATTTACGCAGAAACAGAAGATATAGTGTACTACTCTGTTTTCGAGAAAAATGAACTAGAAATCCAGTATTAGGAAGTTCAGGACTCTTGAAATATGTTGGCCTATAATTTCTAGAATAGTTTTTTTTTCAGAGCCCAGAACTTTATGTGATCTTTAAATTTTGAGCTGTCATCATGCAACAGAGCAGGGTTTTTTTTTCAAAATTATGCCCCGTTCCCTGAAAAAAATTCATAATTTTAGATTTCCAGGTCATATTCCTAATGCTAAGACACCACTCGATGATCTCTTGACCATCGACCCCCTCTATTCTAGTGAACACTTTTTCATCAATCACAATGATTCAGATTTTCTCACATCTCATTCTTATCAATCAATCAAAAAATCTTCTAT</canonical>
            <polymorphic>ATTCTCCTCTTCTGTAACACAATCTCCATTCTAATAACACAAACAAAAAAACTTTTTTTGAAAACGATAAAAGTTTTCAATATTTGAATTGTTCAGTTCGAGACCCATAGTCAGTTTAATGTCTCAGTTTGCCGACCGTTTTGCCAAAAAGGAAATAAAAAGTTGAACTTTGAAAAAAAAGAAAAGAATAAGAAAAACGGGTTCGGTCATCTGGTCAGAATCAACAAATAAAACTGATAAAAGCAAAAAATTCGTCGGGGTGGTCTTAAATTTTTTTTTGGGTTTGTTTGAATAGGAAAAATTTATATAAAGTATCGGAATCTATAATTTCTGAATTCCCAACTCGGGCGTTTCCCCTTGAAAAGAACGTTTCTACGATATTTTCAATCTAAATTTCCAGTTTCTTCTTCCTCCCACATCATCTTCTCCGACCCCACATTTATACAGCTTGCACCCTTTTGTTTTCCAATTCCATTTTTTTCTTCTTTTTTCGCTTTCAMCCAAGGCGCCGTCCGTCCATCAGACGGACGGACGGACACTATATAAATTTCTGGACGACGCTTTTTTCTTCTTCTCCTTCTTCTTCCTTCTTGTCTTCCAGATGCGCCTTATTTACGCAGAAACAGAAGATATAGTGTACTACTCTGTTTTCGAGAAAAATGAACTAGAAATCCAGTATTAGGAAGTTCAGGACTCTTGAAATATGTTGGCCTATAATTTCTAGAATAGTTTTTTTTTCAGAGCCCAGAACTTTATGTGATCTTTAAATTTTGAGCTGTCATCATGCAACAGAGCAGGGTTTTTTTTTCAAAATTATGCCCCGTTCCCTGAAAAAAATTCATAATTTTAGATTTCCAGGTCATATTCCTAATGCTAAGACACCACTCGATGATCTCTTGACCATCGACCCCCTCTATTCTAGTGAACACTTTTTCATCAATCACAATGATTCAGATTTTCTCACATCTCATTCTTATCAATCAATCAAAAAATCTTCTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAATCTAAATTTCCAGTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATCTTCTGTTTCTGCGTAAATAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCAATCTAAATTTCCAGTTTCTTCTTCCTCCCACATCATCTTCTCCGACCCCACATTTATACAGCTTGCACCCTTTTGTTTTCCAATTCCATTTTTTTCTTCTTTTTTCGCTTTCAACCAAGGCGCCGTCCGTCCATCAGACGGACGGACGGACACTATATAAATTTCTGGACGACGCTTTTTTCTTCTTCTCCTTCTTCTTCCTTCTTGTCTTCCAGATGCGCCTTATTTACGCAGAAACAGAAGAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAATCTAAATTTCCAGTTTCTTCTTCCTCCCACATCATCTTCTCCGACCCCACATTTATACAGCTTGCACCCTTTTGTTTTCCAATTCCATTTTTTTCTTCTTTTTTCGCTTTCAMCCAAGGCGCCGTCCGTCCATCAGACGGACGGACGGACACTATATAAATTTCTGGACGACGCTTTTTTCTTCTTCTCCTTCTTCTTCCTTCTTGTCTTCCAGATGCGCCTTATTTACGCAGAAACAGAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34641</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>293641</contig_pos>
        <strand>+</strand>
        <context>GTTGATCATM[A/C]GAACTTTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTCATTTAAAAATGATGAGCAATCCTTGCAGATTTTTTTAGTTGATCATA</left_flank>
        <right_flank>GAACTTTGAAAAATAAACGGATTCCATTCGGCGGAAGTCAAAACCAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGCAGCTATGGAAAAAAAAACACGGAACAAATATTTTTAGGGAAAAGAATAGGGATCAAAGCGTTTTGGGTGTGTATGTGCATATATGTGTTCTGTTATGTTTGCAAAGAAAAATATGCTGGGCAGAAAAACAGATCTTTGGGAAGGTGATGTCTGGGTTGATCAGAAAGAAACCAGGATCTTCAGTATGCTAACCTTGGAATTTCTAGATTTGGTTTGTAGGTCAAGCTGTTTGAGCCAACAGAACTCAACATGACACACTCGACAGTATCAACTCGCAGGACCATTTTATAACTGATCTCGTTTTGAAAATTAGACCACAATTAAGCACAAATTTACTTAAAGAACTGAGACCAGAGTCTTGAACTTTAAGCCTAAAGGTTCGAAGCCCAAGGTTCACAATCCCGCATTGTTTAATGTTTACCACAGATTTCTTCATAGGAATCCTCATTTAAAAATGATGAGCAATCCTTGCAGATTTTTTTAGTTGATCATAAGAACTTTGAAAAATAAACGGATTCCATTCGGCGGAAGTCAAAACCAAATTTTAAGGTCATTTCAGATGATTTTTACAGACGTAACAGTCTGAAACCTCTGATAAAGTTGCACCCTGGAATTTTAGTTAATGCCAGGTTTTTCTTGGTTGCTGTCACCAAACGAATCATAGCAGCAAAAATATTATATTCGTTGAGCATGTTTTGATATCTTTACCAGGAATCCAGAAAAAATGGCCCAAGGTTTCAGGGTGTCACTCTATTAGAGCTTTTATGGTAGCTTCTTCAGCCCTTGCTAAAATTAGGCCACCGCTCCTTTTTGTGCTTTACTCCGAACACACTTTTTCCGCCCTGAAACTCTATACCCCTGTGATTGCTCTGATTTTGACACTTGCAAAAAAAGTGTACCGGAAAAAAATCAATTAATTAAATAATTCCTCCTCCTCTCTTCCCTTTGTCCTCTCAACCCAGAACTACAATACAAAAGTGCAGAGTCAATGTTA</canonical>
            <polymorphic>TTTTGCAGCTATGGAAAAAAAAACACGGAACAAATATTTTTAGGGAAAAGAATAGGGATCAAAGCGTTTTGGGTGTGTATGTGCATATATGTGTTCTGTTATGTTTGCAAAGAAAAATATGCTGGGCAGAAAAACAGATCTTTGGGAAGGTGATGTCTGGGTTGATCAGAAAGAAACCAGGATCTTCAGTATGCTAACCTTGGAATTTCTAGATTTGGTTTGTAGGTCAAGCTGTTTGAGCCAACAGAACTCAACATGACACACTCGACAGTATCAACTCGCAGGACCATTTTATAACTGATCTCGTTTTGAAAATTAGACCACAATTAAGCACAAATTTACTTAAAGAACTGAGACCAGAGTCTTGAACTTTAAGCCTAAAGGTTCGAAGCCCAAGGTTCACAATCCCGCATTGTTTAATGTTTACCACAGATTTCTTCATAGGAATCCTCATTTAAAAATGATGAGCAATCCTTGCAGATTTTTTTAGTTGATCATAMGAACTTTGAAAAATAAACGGATTCCATTCGGCGGAAGTCAAAACCAAATTTTAAGGTCATTTCAGATGATTTTTACAGACGTAACAGTCTGAAACCTCTGATAAAGTTGCACCCTGGAATTTTAGTTAATGCCAGGTTTTTCTTGGTTGCTGTCACCAAACGAATCATAGCAGCAAAAATATTATATTCGTTGAGCATGTTTTGATATCTTTACCAGGAATCCAGAAAAAATGGCCCAAGGTTTCAGGGTGTCACTCTATTAGAGCTTTTATGGTAGCTTCTTCAGCCCTTGCTAAAATTAGGCCACCGCTCCTTTTTGTGCTTTACTCCGAACACACTTTTTCCGCCCTGAAACTCTATACCCCTGTGATTGCTCTGATTTTGACACTTGCAAAAAAAGTGTACCGGAAAAAAATCAATTAATTAAATAATTCCTCCTCCTCTCTTCCCTTTGTCCTCTCAACCCAGAACTACAATACAAAAGTGCAGAGTCAATGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAATTAGACCACAATTAAGC</pcr_primer_p1>
		<pcr_primer_p2>GACCTTAAAATTTGGTTTTGACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAAAATTAGACCACAATTAAGCACAAATTTACTTAAAGAACTGAGACCAGAGTCTTGAACTTTAAGCCTAAAGGTTCGAAGCCCAAGGTTCACAATCCCGCATTGTTTAATGTTTACCACAGATTTCTTCATAGGAATCCTCATTTAAAAATGATGAGCAATCCTTGCAGATTTTTTTAGTTGATCATAAGAACTTTGAAAAATAAACGGATTCCATTCGGCGGAAGTCAAAACCAAATTTTAAGGTC</canonical_amplicon>
		<polymorphic_amplicon>TGAAAATTAGACCACAATTAAGCACAAATTTACTTAAAGAACTGAGACCAGAGTCTTGAACTTTAAGCCTAAAGGTTCGAAGCCCAAGGTTCACAATCCCGCATTGTTTAATGTTTACCACAGATTTCTTCATAGGAATCCTCATTTAAAAATGATGAGCAATCCTTGCAGATTTTTTTAGTTGATCATAMGAACTTTGAAAAATAAACGGATTCCATTCGGCGGAAGTCAAAACCAAATTTTAAGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34642</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>348574</contig_pos>
        <strand>+</strand>
        <context>CAAAAATACT[A/G]AAATAGTGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACTATAGAAAATGAACCTCTACCGTGTGTTTTGGTTTTCAAAAATACT</left_flank>
        <right_flank>AAATAGTGAGGTAATCAAAAAATTAAGACTTTATTTTTAGAGAATCAAAA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACAGGTTTTACGGTATCAGGAAATTGAGATCTCCAACTTATTGGAAATTTTAAAATCTTAAAAATCTTGGAAGTTAAAGACTTTCTTACAATTTCCGGTTTTTTTTTTGGTACAACTCTATTAAAGGTGGGGGGACATGAAAAAAATTATTTTCTCGAAATTCCGTTTACATACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGAATGGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCGAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAGGAATTTAACGTAATTTTTACTGATTACACATTCGTTCAAAAAAACCAGATCCAAACTATAGAAAATGAACCTCTACCGTGTGTTTTGGTTTTCAAAAATACTGAAATAGTGAGGTAATCAAAAAATTAAGACTTTATTTTTAGAGAATCAAAATATAATATCTTGTAGGAAAACCCAGGACTGCCGGTTTTTGTGCAGAACGTTACCCCAATAGTAATTCTTAAACTCCGTCATTTTCTAGTTTTCATCCTAGATCCATTACAATTTCTATAATCAAATTATACATTAATTCGTTTGGTTTTGGACCAAAGTTTCCATTCCGAGAACTTCTACCTAATATCCGGCTCCCGGTCCCCCTTATATCCTCATGTTGCATACAGAAAATCTCTGACCCTTCTAATCCCATCAATGCTTCTAATCCTGTTAATTTTGGGGTATTTAAGCGAATATGAGGTCTGCAAATCTTGTCTTAGAGTCTAATTCCAAGAATCAGTATACTGTAGTTTAAGAGATTTAAATTTCTCAAAAACAAAATCAAACTGATTTCTGTCTTTCCAAAAATACAATTACTAGAGTCTCTATCAGGAGTCATTTTTCAATTTC</canonical>
            <polymorphic>TACAGGTTTTACGGTATCAGGAAATTGAGATCTCCAACTTATTGGAAATTTTAAAATCTTAAAAATCTTGGAAGTTAAAGACTTTCTTACAATTTCCGGTTTTTTTTTTGGTACAACTCTATTAAAGGTGGGGGGACATGAAAAAAATTATTTTCTCGAAATTCCGTTTACATACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGAATGGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCGAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAGGAATTTAACGTAATTTTTACTGATTACACATTCGTTCAAAAAAACCAGATCCAAACTATAGAAAATGAACCTCTACCGTGTGTTTTGGTTTTCAAAAATACTRAAATAGTGAGGTAATCAAAAAATTAAGACTTTATTTTTAGAGAATCAAAATATAATATCTTGTAGGAAAACCCAGGACTGCCGGTTTTTGTGCAGAACGTTACCCCAATAGTAATTCTTAAACTCCGTCATTTTCTAGTTTTCATCCTAGATCCATTACAATTTCTATAATCAAATTATACATTAATTCGTTTGGTTTTGGACCAAAGTTTCCATTCCGAGAACTTCTACCTAATATCCGGCTCCCGGTCCCCCTTATATCCTCATGTTGCATACAGAAAATCTCTGACCCTTCTAATCCCATCAATGCTTCTAATCCTGTTAATTTTGGGGTATTTAAGCGAATATGAGGTCTGCAAATCTTGTCTTAGAGTCTAATTCCAAGAATCAGTATACTGTAGTTTAAGAGATTTAAATTTCTCAAAAACAAAATCAAACTGATTTCTGTCTTTCCAAAAATACAATTACTAGAGTCTCTATCAGGAGTCATTTTTCAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCTTTAAGGAATTTAACGTAAT</pcr_primer_p1>
		<pcr_primer_p2>TAGAAAATGACGGAGTTTAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACCTTTAAGGAATTTAACGTAATTTTTACTGATTACACATTCGTTCAAAAAAACCAGATCCAAACTATAGAAAATGAACCTCTACCGTGTGTTTTGGTTTTCAAAAATACTGAAATAGTGAGGTAATCAAAAAATTAAGACTTTATTTTTAGAGAATCAAAATATAATATCTTGTAGGAAAACCCAGGACTGCCGGTTTTTGTGCAGAACGTTACCCCAATAGTAATTCTTAAACTCCGTCATTTTCTA</canonical_amplicon>
		<polymorphic_amplicon>CACCTTTAAGGAATTTAACGTAATTTTTACTGATTACACATTCGTTCAAAAAAACCAGATCCAAACTATAGAAAATGAACCTCTACCGTGTGTTTTGGTTTTCAAAAATACTRAAATAGTGAGGTAATCAAAAAATTAAGACTTTATTTTTAGAGAATCAAAATATAATATCTTGTAGGAAAACCCAGGACTGCCGGTTTTTGTGCAGAACGTTACCCCAATAGTAATTCTTAAACTCCGTCATTTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34643</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>348600</contig_pos>
        <strand>+</strand>
        <context>CAAAAAATTA[A/C]GACTWTATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGTGTTTTGGTTTTCAAAAATACTGAAATAGTGAGGTAATCAAAAAATTA</left_flank>
        <right_flank>GACTTTATTTTTAGAGAATCAAAATATAATATCTTGTAGGAAAACCCAGG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGATCTCCAACTTATTGGAAATTTTAAAATCTTAAAAATCTTGGAAGTTAAAGACTTTCTTACAATTTCCGGTTTTTTTTTTGGTACAACTCTATTAAAGGTGGGGGGACATGAAAAAAATTATTTTCTCGAAATTCCGTTTACATACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGAATGGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCGAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAGGAATTTAACGTAATTTTTACTGATTACACATTCGTTCAAAAAAACCAGATCCAAACTATAGAAAATGAACCTCTACCGTGTGTTTTGGTTTTCAAAAATACTGAAATAGTGAGGTAATCAAAAAATTAAGACTTTATTTTTAGAGAATCAAAATATAATATCTTGTAGGAAAACCCAGGACTGCCGGTTTTTGTGCAGAACGTTACCCCAATAGTAATTCTTAAACTCCGTCATTTTCTAGTTTTCATCCTAGATCCATTACAATTTCTATAATCAAATTATACATTAATTCGTTTGGTTTTGGACCAAAGTTTCCATTCCGAGAACTTCTACCTAATATCCGGCTCCCGGTCCCCCTTATATCCTCATGTTGCATACAGAAAATCTCTGACCCTTCTAATCCCATCAATGCTTCTAATCCTGTTAATTTTGGGGTATTTAAGCGAATATGAGGTCTGCAAATCTTGTCTTAGAGTCTAATTCCAAGAATCAGTATACTGTAGTTTAAGAGATTTAAATTTCTCAAAAACAAAATCAAACTGATTTCTGTCTTTCCAAAAATACAATTACTAGAGTCTCTATCAGGAGTCATTTTTCAATTTCTACGAAAACTACAAAACTTCTTGTTG</canonical>
            <polymorphic>GAGATCTCCAACTTATTGGAAATTTTAAAATCTTAAAAATCTTGGAAGTTAAAGACTTTCTTACAATTTCCGGTTTTTTTTTTGGTACAACTCTATTAAAGGTGGGGGGACATGAAAAAAATTATTTTCTCGAAATTCCGTTTACATACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGAATGGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCGAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAGGAATTTAACGTAATTTTTACTGATTACACATTCGTTCAAAAAAACCAGATCCAAACTATAGAAAATGAACCTCTACCGTGTGTTTTGGTTTTCAAAAATACTGAAATAGTGAGGTAATCAAAAAATTAMGACTTTATTTTTAGAGAATCAAAATATAATATCTTGTAGGAAAACCCAGGACTGCCGGTTTTTGTGCAGAACGTTACCCCAATAGTAATTCTTAAACTCCGTCATTTTCTAGTTTTCATCCTAGATCCATTACAATTTCTATAATCAAATTATACATTAATTCGTTTGGTTTTGGACCAAAGTTTCCATTCCGAGAACTTCTACCTAATATCCGGCTCCCGGTCCCCCTTATATCCTCATGTTGCATACAGAAAATCTCTGACCCTTCTAATCCCATCAATGCTTCTAATCCTGTTAATTTTGGGGTATTTAAGCGAATATGAGGTCTGCAAATCTTGTCTTAGAGTCTAATTCCAAGAATCAGTATACTGTAGTTTAAGAGATTTAAATTTCTCAAAAACAAAATCAAACTGATTTCTGTCTTTCCAAAAATACAATTACTAGAGTCTCTATCAGGAGTCATTTTTCAATTTCTACGAAAACTACAAAACTTCTTGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>192 138 121 115 95 79 66 65 47 25 16 15 9 9 8</canonical_bands>
                <polymorphic_bands>216 192 138 115 79 66 65 47 25 16 15 9 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACCTTTAAGGAATTTAACGTAAT</pcr_primer_p1>
		<pcr_primer_p2>TAGAAAATGACGGAGTTTAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACCTTTAAGGAATTTAACGTAATTTTTACTGATTACACATTCGTTCAAAAAAACCAGATCCAAACTATAGAAAATGAACCTCTACCGTGTGTTTTGGTTTTCAAAAATACTGAAATAGTGAGGTAATCAAAAAATTAAGACTTTATTTTTAGAGAATCAAAATATAATATCTTGTAGGAAAACCCAGGACTGCCGGTTTTTGTGCAGAACGTTACCCCAATAGTAATTCTTAAACTCCGTCATTTTCTA</canonical_amplicon>
		<polymorphic_amplicon>CACCTTTAAGGAATTTAACGTAATTTTTACTGATTACACATTCGTTCAAAAAAACCAGATCCAAACTATAGAAAATGAACCTCTACCGTGTGTTTTGGTTTTCAAAAATACTGAAATAGTGAGGTAATCAAAAAATTAMGACTTTATTTTTAGAGAATCAAAATATAATATCTTGTAGGAAAACCCAGGACTGCCGGTTTTTGTGCAGAACGTTACCCCAATAGTAATTCTTAAACTCCGTCATTTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34644</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>348605</contig_pos>
        <strand>+</strand>
        <context>AATTAMGACT[A/T]TATTTTTAGR</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGGTTTTCAAAAATACTGAAATAGTGAGGTAATCAAAAAATTAAGACT</left_flank>
        <right_flank>TATTTTTAGAGAATCAAAATATAATATCTTGTAGGAAAACCCAGGACTGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCAACTTATTGGAAATTTTAAAATCTTAAAAATCTTGGAAGTTAAAGACTTTCTTACAATTTCCGGTTTTTTTTTTGGTACAACTCTATTAAAGGTGGGGGGACATGAAAAAAATTATTTTCTCGAAATTCCGTTTACATACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGAATGGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCGAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAGGAATTTAACGTAATTTTTACTGATTACACATTCGTTCAAAAAAACCAGATCCAAACTATAGAAAATGAACCTCTACCGTGTGTTTTGGTTTTCAAAAATACTGAAATAGTGAGGTAATCAAAAAATTAAGACTTTATTTTTAGAGAATCAAAATATAATATCTTGTAGGAAAACCCAGGACTGCCGGTTTTTGTGCAGAACGTTACCCCAATAGTAATTCTTAAACTCCGTCATTTTCTAGTTTTCATCCTAGATCCATTACAATTTCTATAATCAAATTATACATTAATTCGTTTGGTTTTGGACCAAAGTTTCCATTCCGAGAACTTCTACCTAATATCCGGCTCCCGGTCCCCCTTATATCCTCATGTTGCATACAGAAAATCTCTGACCCTTCTAATCCCATCAATGCTTCTAATCCTGTTAATTTTGGGGTATTTAAGCGAATATGAGGTCTGCAAATCTTGTCTTAGAGTCTAATTCCAAGAATCAGTATACTGTAGTTTAAGAGATTTAAATTTCTCAAAAACAAAATCAAACTGATTTCTGTCTTTCCAAAAATACAATTACTAGAGTCTCTATCAGGAGTCATTTTTCAATTTCTACGAAAACTACAAAACTTCTTGTTGACTCT</canonical>
            <polymorphic>CTCCAACTTATTGGAAATTTTAAAATCTTAAAAATCTTGGAAGTTAAAGACTTTCTTACAATTTCCGGTTTTTTTTTTGGTACAACTCTATTAAAGGTGGGGGGACATGAAAAAAATTATTTTCTCGAAATTCCGTTTACATACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGAATGGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCGAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAGGAATTTAACGTAATTTTTACTGATTACACATTCGTTCAAAAAAACCAGATCCAAACTATAGAAAATGAACCTCTACCGTGTGTTTTGGTTTTCAAAAATACTGAAATAGTGAGGTAATCAAAAAATTAAGACTWTATTTTTAGAGAATCAAAATATAATATCTTGTAGGAAAACCCAGGACTGCCGGTTTTTGTGCAGAACGTTACCCCAATAGTAATTCTTAAACTCCGTCATTTTCTAGTTTTCATCCTAGATCCATTACAATTTCTATAATCAAATTATACATTAATTCGTTTGGTTTTGGACCAAAGTTTCCATTCCGAGAACTTCTACCTAATATCCGGCTCCCGGTCCCCCTTATATCCTCATGTTGCATACAGAAAATCTCTGACCCTTCTAATCCCATCAATGCTTCTAATCCTGTTAATTTTGGGGTATTTAAGCGAATATGAGGTCTGCAAATCTTGTCTTAGAGTCTAATTCCAAGAATCAGTATACTGTAGTTTAAGAGATTTAAATTTCTCAAAAACAAAATCAAACTGATTTCTGTCTTTCCAAAAATACAATTACTAGAGTCTCTATCAGGAGTCATTTTTCAATTTCTACGAAAACTACAAAACTTCTTGTTGACTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCTTTAAGGAATTTAACGTAAT</pcr_primer_p1>
		<pcr_primer_p2>TAGAAAATGACGGAGTTTAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACCTTTAAGGAATTTAACGTAATTTTTACTGATTACACATTCGTTCAAAAAAACCAGATCCAAACTATAGAAAATGAACCTCTACCGTGTGTTTTGGTTTTCAAAAATACTGAAATAGTGAGGTAATCAAAAAATTAAGACTTTATTTTTAGAGAATCAAAATATAATATCTTGTAGGAAAACCCAGGACTGCCGGTTTTTGTGCAGAACGTTACCCCAATAGTAATTCTTAAACTCCGTCATTTTCTA</canonical_amplicon>
		<polymorphic_amplicon>CACCTTTAAGGAATTTAACGTAATTTTTACTGATTACACATTCGTTCAAAAAAACCAGATCCAAACTATAGAAAATGAACCTCTACCGTGTGTTTTGGTTTTCAAAAATACTGAAATAGTGAGGTAATCAAAAAATTAAGACTWTATTTTTAGAGAATCAAAATATAATATCTTGTAGGAAAACCCAGGACTGCCGGTTTTTGTGCAGAACGTTACCCCAATAGTAATTCTTAAACTCCGTCATTTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34645</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>348615</contig_pos>
        <strand>+</strand>
        <context>WTATTTTTAG[A/G]GAATCAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAATACTGAAATAGTGAGGTAATCAAAAAATTAAGACTTTATTTTTAG</left_flank>
        <right_flank>GAATCAAAATATAATATCTTGTAGGAAAACCCAGGACTGCCGGTTTTTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGAAATTTTAAAATCTTAAAAATCTTGGAAGTTAAAGACTTTCTTACAATTTCCGGTTTTTTTTTTGGTACAACTCTATTAAAGGTGGGGGGACATGAAAAAAATTATTTTCTCGAAATTCCGTTTACATACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGAATGGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCGAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAGGAATTTAACGTAATTTTTACTGATTACACATTCGTTCAAAAAAACCAGATCCAAACTATAGAAAATGAACCTCTACCGTGTGTTTTGGTTTTCAAAAATACTGAAATAGTGAGGTAATCAAAAAATTAAGACTTTATTTTTAGAGAATCAAAATATAATATCTTGTAGGAAAACCCAGGACTGCCGGTTTTTGTGCAGAACGTTACCCCAATAGTAATTCTTAAACTCCGTCATTTTCTAGTTTTCATCCTAGATCCATTACAATTTCTATAATCAAATTATACATTAATTCGTTTGGTTTTGGACCAAAGTTTCCATTCCGAGAACTTCTACCTAATATCCGGCTCCCGGTCCCCCTTATATCCTCATGTTGCATACAGAAAATCTCTGACCCTTCTAATCCCATCAATGCTTCTAATCCTGTTAATTTTGGGGTATTTAAGCGAATATGAGGTCTGCAAATCTTGTCTTAGAGTCTAATTCCAAGAATCAGTATACTGTAGTTTAAGAGATTTAAATTTCTCAAAAACAAAATCAAACTGATTTCTGTCTTTCCAAAAATACAATTACTAGAGTCTCTATCAGGAGTCATTTTTCAATTTCTACGAAAACTACAAAACTTCTTGTTGACTCTCTTAAAATTT</canonical>
            <polymorphic>TTGGAAATTTTAAAATCTTAAAAATCTTGGAAGTTAAAGACTTTCTTACAATTTCCGGTTTTTTTTTTGGTACAACTCTATTAAAGGTGGGGGGACATGAAAAAAATTATTTTCTCGAAATTCCGTTTACATACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGAATGGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCGAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAGGAATTTAACGTAATTTTTACTGATTACACATTCGTTCAAAAAAACCAGATCCAAACTATAGAAAATGAACCTCTACCGTGTGTTTTGGTTTTCAAAAATACTGAAATAGTGAGGTAATCAAAAAATTAAGACTTTATTTTTAGRGAATCAAAATATAATATCTTGTAGGAAAACCCAGGACTGCCGGTTTTTGTGCAGAACGTTACCCCAATAGTAATTCTTAAACTCCGTCATTTTCTAGTTTTCATCCTAGATCCATTACAATTTCTATAATCAAATTATACATTAATTCGTTTGGTTTTGGACCAAAGTTTCCATTCCGAGAACTTCTACCTAATATCCGGCTCCCGGTCCCCCTTATATCCTCATGTTGCATACAGAAAATCTCTGACCCTTCTAATCCCATCAATGCTTCTAATCCTGTTAATTTTGGGGTATTTAAGCGAATATGAGGTCTGCAAATCTTGTCTTAGAGTCTAATTCCAAGAATCAGTATACTGTAGTTTAAGAGATTTAAATTTCTCAAAAACAAAATCAAACTGATTTCTGTCTTTCCAAAAATACAATTACTAGAGTCTCTATCAGGAGTCATTTTTCAATTTCTACGAAAACTACAAAACTTCTTGTTGACTCTCTTAAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCTTTAAGGAATTTAACGTAAT</pcr_primer_p1>
		<pcr_primer_p2>TAGAAAATGACGGAGTTTAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACCTTTAAGGAATTTAACGTAATTTTTACTGATTACACATTCGTTCAAAAAAACCAGATCCAAACTATAGAAAATGAACCTCTACCGTGTGTTTTGGTTTTCAAAAATACTGAAATAGTGAGGTAATCAAAAAATTAAGACTTTATTTTTAGAGAATCAAAATATAATATCTTGTAGGAAAACCCAGGACTGCCGGTTTTTGTGCAGAACGTTACCCCAATAGTAATTCTTAAACTCCGTCATTTTCTA</canonical_amplicon>
		<polymorphic_amplicon>CACCTTTAAGGAATTTAACGTAATTTTTACTGATTACACATTCGTTCAAAAAAACCAGATCCAAACTATAGAAAATGAACCTCTACCGTGTGTTTTGGTTTTCAAAAATACTGAAATAGTGAGGTAATCAAAAAATTAAGACTTTATTTTTAGRGAATCAAAATATAATATCTTGTAGGAAAACCCAGGACTGCCGGTTTTTGTGCAGAACGTTACCCCAATAGTAATTCTTAAACTCCGTCATTTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34646</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>348673</contig_pos>
        <strand>+</strand>
        <context>TGTGCAGAAC[A/G]TTACCCCAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATATAATATCTTGTAGGAAAACCCAGGACTGCCGGTTTTTGTGCAGAAC</left_flank>
        <right_flank>TTACCCCAATAGTAATTCTTAAACTCCGTCATTTTCTAGTTTTCATCCTA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTTTTTGGTACAACTCTATTAAAGGTGGGGGGACATGAAAAAAATTATTTTCTCGAAATTCCGTTTACATACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGAATGGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCGAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAGGAATTTAACGTAATTTTTACTGATTACACATTCGTTCAAAAAAACCAGATCCAAACTATAGAAAATGAACCTCTACCGTGTGTTTTGGTTTTCAAAAATACTGAAATAGTGAGGTAATCAAAAAATTAAGACTTTATTTTTAGAGAATCAAAATATAATATCTTGTAGGAAAACCCAGGACTGCCGGTTTTTGTGCAGAACGTTACCCCAATAGTAATTCTTAAACTCCGTCATTTTCTAGTTTTCATCCTAGATCCATTACAATTTCTATAATCAAATTATACATTAATTCGTTTGGTTTTGGACCAAAGTTTCCATTCCGAGAACTTCTACCTAATATCCGGCTCCCGGTCCCCCTTATATCCTCATGTTGCATACAGAAAATCTCTGACCCTTCTAATCCCATCAATGCTTCTAATCCTGTTAATTTTGGGGTATTTAAGCGAATATGAGGTCTGCAAATCTTGTCTTAGAGTCTAATTCCAAGAATCAGTATACTGTAGTTTAAGAGATTTAAATTTCTCAAAAACAAAATCAAACTGATTTCTGTCTTTCCAAAAATACAATTACTAGAGTCTCTATCAGGAGTCATTTTTCAATTTCTACGAAAACTACAAAACTTCTTGTTGACTCTCTTAAAATTTCCAAAATTGATCATTGACTGGATTATTGACCAAACTAAATAAAAAATTCAAGGAAATA</canonical>
            <polymorphic>TTTTTTTTTTGGTACAACTCTATTAAAGGTGGGGGGACATGAAAAAAATTATTTTCTCGAAATTCCGTTTACATACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGAATGGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCGAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAGGAATTTAACGTAATTTTTACTGATTACACATTCGTTCAAAAAAACCAGATCCAAACTATAGAAAATGAACCTCTACCGTGTGTTTTGGTTTTCAAAAATACTGAAATAGTGAGGTAATCAAAAAATTAAGACTTTATTTTTAGAGAATCAAAATATAATATCTTGTAGGAAAACCCAGGACTGCCGGTTTTTGTGCAGAACRTTACCCCAATAGTAATTCTTAAACTCCGTCATTTTCTAGTTTTCATCCTAGATCCATTACAATTTCTATAATCAAATTATACATTAATTCGTTTGGTTTTGGACCAAAGTTTCCATTCCGAGAACTTCTACCTAATATCCGGCTCCCGGTCCCCCTTATATCCTCATGTTGCATACAGAAAATCTCTGACCCTTCTAATCCCATCAATGCTTCTAATCCTGTTAATTTTGGGGTATTTAAGCGAATATGAGGTCTGCAAATCTTGTCTTAGAGTCTAATTCCAAGAATCAGTATACTGTAGTTTAAGAGATTTAAATTTCTCAAAAACAAAATCAAACTGATTTCTGTCTTTCCAAAAATACAATTACTAGAGTCTCTATCAGGAGTCATTTTTCAATTTCTACGAAAACTACAAAACTTCTTGTTGACTCTCTTAAAATTTCCAAAATTGATCATTGACTGGATTATTGACCAAACTAAATAAAAAATTCAAGGAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>502 306 192</canonical_bands>
                <polymorphic_bands>694 306</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 269 208 22</canonical_bands>
                <polymorphic_bands>770 208 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAACTATAGAAAATGAACCTCT</pcr_primer_p1>
		<pcr_primer_p2>CAAAACCAAACGAATTAATGTAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CCAAACTATAGAAAATGAACCTCTACCGTGTGTTTTGGTTTTCAAAAATACTGAAATAGTGAGGTAATCAAAAAATTAAGACTTTATTTTTAGAGAATCAAAATATAATATCTTGTAGGAAAACCCAGGACTGCCGGTTTTTGTGCAGAACGTTACCCCAATAGTAATTCTTAAACTCCGTCATTTTCTAGTTTTCATCCTAGATCCATTACAATTTCTATAATCAAATTATACATTAATTCGTTTGGTTTTG</canonical_amplicon>
		<polymorphic_amplicon>CCAAACTATAGAAAATGAACCTCTACCGTGTGTTTTGGTTTTCAAAAATACTGAAATAGTGAGGTAATCAAAAAATTAAGACTTTATTTTTAGAGAATCAAAATATAATATCTTGTAGGAAAACCCAGGACTGCCGGTTTTTGTGCAGAACRTTACCCCAATAGTAATTCTTAAACTCCGTCATTTTCTAGTTTTCATCCTAGATCCATTACAATTTCTATAATCAAATTATACATTAATTCGTTTGGTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34647</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>348720</contig_pos>
        <strand>+</strand>
        <context>TAGTTTTCAT[C/T]CTAGATCCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACGTTACCCCAATAGTAATTCTTAAACTCCGTCATTTTCTAGTTTTCAT</left_flank>
        <right_flank>CTAGATCCATTACAATTTCTATAATCAAATTATACATTAATTCGTTTGGT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATTTTCTCGAAATTCCGTTTACATACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGAATGGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCGAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAGGAATTTAACGTAATTTTTACTGATTACACATTCGTTCAAAAAAACCAGATCCAAACTATAGAAAATGAACCTCTACCGTGTGTTTTGGTTTTCAAAAATACTGAAATAGTGAGGTAATCAAAAAATTAAGACTTTATTTTTAGAGAATCAAAATATAATATCTTGTAGGAAAACCCAGGACTGCCGGTTTTTGTGCAGAACGTTACCCCAATAGTAATTCTTAAACTCCGTCATTTTCTAGTTTTCATCCTAGATCCATTACAATTTCTATAATCAAATTATACATTAATTCGTTTGGTTTTGGACCAAAGTTTCCATTCCGAGAACTTCTACCTAATATCCGGCTCCCGGTCCCCCTTATATCCTCATGTTGCATACAGAAAATCTCTGACCCTTCTAATCCCATCAATGCTTCTAATCCTGTTAATTTTGGGGTATTTAAGCGAATATGAGGTCTGCAAATCTTGTCTTAGAGTCTAATTCCAAGAATCAGTATACTGTAGTTTAAGAGATTTAAATTTCTCAAAAACAAAATCAAACTGATTTCTGTCTTTCCAAAAATACAATTACTAGAGTCTCTATCAGGAGTCATTTTTCAATTTCTACGAAAACTACAAAACTTCTTGTTGACTCTCTTAAAATTTCCAAAATTGATCATTGACTGGATTATTGACCAAACTAAATAAAAAATTCAAGGAAATAAATTTTCTTGAAAACAATGGACCATCTGAGATTCTGAAAATATTTCC</canonical>
            <polymorphic>ATTATTTTCTCGAAATTCCGTTTACATACGCCCCTCGAGGAGTTGAACTTGTGAGGGCGAGAATGGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGCCGTCGGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCGAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAGGAATTTAACGTAATTTTTACTGATTACACATTCGTTCAAAAAAACCAGATCCAAACTATAGAAAATGAACCTCTACCGTGTGTTTTGGTTTTCAAAAATACTGAAATAGTGAGGTAATCAAAAAATTAAGACTTTATTTTTAGAGAATCAAAATATAATATCTTGTAGGAAAACCCAGGACTGCCGGTTTTTGTGCAGAACGTTACCCCAATAGTAATTCTTAAACTCCGTCATTTTCTAGTTTTCATYCTAGATCCATTACAATTTCTATAATCAAATTATACATTAATTCGTTTGGTTTTGGACCAAAGTTTCCATTCCGAGAACTTCTACCTAATATCCGGCTCCCGGTCCCCCTTATATCCTCATGTTGCATACAGAAAATCTCTGACCCTTCTAATCCCATCAATGCTTCTAATCCTGTTAATTTTGGGGTATTTAAGCGAATATGAGGTCTGCAAATCTTGTCTTAGAGTCTAATTCCAAGAATCAGTATACTGTAGTTTAAGAGATTTAAATTTCTCAAAAACAAAATCAAACTGATTTCTGTCTTTCCAAAAATACAATTACTAGAGTCTCTATCAGGAGTCATTTTTCAATTTCTACGAAAACTACAAAACTTCTTGTTGACTCTCTTAAAATTTCCAAAATTGATCATTGACTGGATTATTGACCAAACTAAATAAAAAATTCAAGGAAATAAATTTTCTTGAAAACAATGGACCATCTGAGATTCTGAAAATATTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAACTATAGAAAATGAACCTCT</pcr_primer_p1>
		<pcr_primer_p2>CAAAACCAAACGAATTAATGTAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CCAAACTATAGAAAATGAACCTCTACCGTGTGTTTTGGTTTTCAAAAATACTGAAATAGTGAGGTAATCAAAAAATTAAGACTTTATTTTTAGAGAATCAAAATATAATATCTTGTAGGAAAACCCAGGACTGCCGGTTTTTGTGCAGAACGTTACCCCAATAGTAATTCTTAAACTCCGTCATTTTCTAGTTTTCATCCTAGATCCATTACAATTTCTATAATCAAATTATACATTAATTCGTTTGGTTTTG</canonical_amplicon>
		<polymorphic_amplicon>CCAAACTATAGAAAATGAACCTCTACCGTGTGTTTTGGTTTTCAAAAATACTGAAATAGTGAGGTAATCAAAAAATTAAGACTTTATTTTTAGAGAATCAAAATATAATATCTTGTAGGAAAACCCAGGACTGCCGGTTTTTGTGCAGAACGTTACCCCAATAGTAATTCTTAAACTCCGTCATTTTCTAGTTTTCATYCTAGATCCATTACAATTTCTATAATCAAATTATACATTAATTCGTTTGGTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34648</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>348981</contig_pos>
        <strand>+</strand>
        <context>GTAGTTTAAG[A/T]GATTTAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATCTTGTCTTAGAGTCTAATTCCAAGAATCAGTATACTGTAGTTTAAG</left_flank>
        <right_flank>GATTTAAATTTCTCAAAAACAAAATCAAACTGATTTCTGTCTTTCCAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTTTTACTGATTACACATTCGTTCAAAAAAACCAGATCCAAACTATAGAAAATGAACCTCTACCGTGTGTTTTGGTTTTCAAAAATACTGAAATAGTGAGGTAATCAAAAAATTAAGACTTTATTTTTAGAGAATCAAAATATAATATCTTGTAGGAAAACCCAGGACTGCCGGTTTTTGTGCAGAACGTTACCCCAATAGTAATTCTTAAACTCCGTCATTTTCTAGTTTTCATCCTAGATCCATTACAATTTCTATAATCAAATTATACATTAATTCGTTTGGTTTTGGACCAAAGTTTCCATTCCGAGAACTTCTACCTAATATCCGGCTCCCGGTCCCCCTTATATCCTCATGTTGCATACAGAAAATCTCTGACCCTTCTAATCCCATCAATGCTTCTAATCCTGTTAATTTTGGGGTATTTAAGCGAATATGAGGTCTGCAAATCTTGTCTTAGAGTCTAATTCCAAGAATCAGTATACTGTAGTTTAAGAGATTTAAATTTCTCAAAAACAAAATCAAACTGATTTCTGTCTTTCCAAAAATACAATTACTAGAGTCTCTATCAGGAGTCATTTTTCAATTTCTACGAAAACTACAAAACTTCTTGTTGACTCTCTTAAAATTTCCAAAATTGATCATTGACTGGATTATTGACCAAACTAAATAAAAAATTCAAGGAAATAAATTTTCTTGAAAACAATGGACCATCTGAGATTCTGAAAATATTTCCAGAATTAGCTTGAATAATTTATCTCTGTCTGCTGAGTTTGTAGTTTGGTTTTCTTCAAAAATCCTAAAAATTCTCAATTTTCAAAGTTTGAAAAATCTTGTAGTTTGGCTTTCCATTTGAACTCTGATCCCACAAAAAAGGTGAAGGTTCAATATTGTCTTCTATTTCCTTTGATTGATTTGTCCGTAGAGAGGTGACACCAGTTTCAAATTTTGAGGCTGAGCAGTTGTTTGGCGTTGTTCCCACTTTTTGTTTCATTCT</canonical>
            <polymorphic>TAATTTTTACTGATTACACATTCGTTCAAAAAAACCAGATCCAAACTATAGAAAATGAACCTCTACCGTGTGTTTTGGTTTTCAAAAATACTGAAATAGTGAGGTAATCAAAAAATTAAGACTTTATTTTTAGAGAATCAAAATATAATATCTTGTAGGAAAACCCAGGACTGCCGGTTTTTGTGCAGAACGTTACCCCAATAGTAATTCTTAAACTCCGTCATTTTCTAGTTTTCATCCTAGATCCATTACAATTTCTATAATCAAATTATACATTAATTCGTTTGGTTTTGGACCAAAGTTTCCATTCCGAGAACTTCTACCTAATATCCGGCTCCCGGTCCCCCTTATATCCTCATGTTGCATACAGAAAATCTCTGACCCTTCTAATCCCATCAATGCTTCTAATCCTGTTAATTTTGGGGTATTTAAGCGAATATGAGGTCTGCAAATCTTGTCTTAGAGTCTAATTCCAAGAATCAGTATACTGTAGTTTAAGWGATTTAAATTTCTCAAAAACAAAATCAAACTGATTTCTGTCTTTCCAAAAATACAATTACTAGAGTCTCTATCAGGAGTCATTTTTCAATTTCTACGAAAACTACAAAACTTCTTGTTGACTCTCTTAAAATTTCCAAAATTGATCATTGACTGGATTATTGACCAAACTAAATAAAAAATTCAAGGAAATAAATTTTCTTGAAAACAATGGACCATCTGAGATTCTGAAAATATTTCCAGAATTAGCTTGAATAATTTATCTCTGTCTGCTGAGTTTGTAGTTTGGTTTTCTTCAAAAATCCTAAAAATTCTCAATTTTCAAAGTTTGAAAAATCTTGTAGTTTGGCTTTCCATTTGAACTCTGATCCCACAAAAAAGGTGAAGGTTCAATATTGTCTTCTATTTCCTTTGATTGATTTGTCCGTAGAGAGGTGACACCAGTTTCAAATTTTGAGGCTGAGCAGTTGTTTGGCGTTGTTCCCACTTTTTGTTTCATTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTAAGCGAATATGAGGTCTG</pcr_primer_p1>
		<pcr_primer_p2>TTAGTTTGGTCAATAATCCAGTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TATTTAAGCGAATATGAGGTCTGCAAATCTTGTCTTAGAGTCTAATTCCAAGAATCAGTATACTGTAGTTTAAGAGATTTAAATTTCTCAAAAACAAAATCAAACTGATTTCTGTCTTTCCAAAAATACAATTACTAGAGTCTCTATCAGGAGTCATTTTTCAATTTCTACGAAAACTACAAAACTTCTTGTTGACTCTCTTAAAATTTCCAAAATTGATCATTGACTGGATTATTGACCAAACTAA</canonical_amplicon>
		<polymorphic_amplicon>TATTTAAGCGAATATGAGGTCTGCAAATCTTGTCTTAGAGTCTAATTCCAAGAATCAGTATACTGTAGTTTAAGWGATTTAAATTTCTCAAAAACAAAATCAAACTGATTTCTGTCTTTCCAAAAATACAATTACTAGAGTCTCTATCAGGAGTCATTTTTCAATTTCTACGAAAACTACAAAACTTCTTGTTGACTCTCTTAAAATTTCCAAAATTGATCATTGACTGGATTATTGACCAAACTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34649</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>349026</contig_pos>
        <strand>+</strand>
        <context>TTCTGTCTTT[C/T]CAAAAATACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAGAGATTTAAATTTCTCAAAAACAAAATCAAACTGATTTCTGTCTTT</left_flank>
        <right_flank>CAAAAATACAATTACTAGAGTCTCTATCAGGAGTCATTTTTCAATTTCTA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATAGAAAATGAACCTCTACCGTGTGTTTTGGTTTTCAAAAATACTGAAATAGTGAGGTAATCAAAAAATTAAGACTTTATTTTTAGAGAATCAAAATATAATATCTTGTAGGAAAACCCAGGACTGCCGGTTTTTGTGCAGAACGTTACCCCAATAGTAATTCTTAAACTCCGTCATTTTCTAGTTTTCATCCTAGATCCATTACAATTTCTATAATCAAATTATACATTAATTCGTTTGGTTTTGGACCAAAGTTTCCATTCCGAGAACTTCTACCTAATATCCGGCTCCCGGTCCCCCTTATATCCTCATGTTGCATACAGAAAATCTCTGACCCTTCTAATCCCATCAATGCTTCTAATCCTGTTAATTTTGGGGTATTTAAGCGAATATGAGGTCTGCAAATCTTGTCTTAGAGTCTAATTCCAAGAATCAGTATACTGTAGTTTAAGAGATTTAAATTTCTCAAAAACAAAATCAAACTGATTTCTGTCTTTCCAAAAATACAATTACTAGAGTCTCTATCAGGAGTCATTTTTCAATTTCTACGAAAACTACAAAACTTCTTGTTGACTCTCTTAAAATTTCCAAAATTGATCATTGACTGGATTATTGACCAAACTAAATAAAAAATTCAAGGAAATAAATTTTCTTGAAAACAATGGACCATCTGAGATTCTGAAAATATTTCCAGAATTAGCTTGAATAATTTATCTCTGTCTGCTGAGTTTGTAGTTTGGTTTTCTTCAAAAATCCTAAAAATTCTCAATTTTCAAAGTTTGAAAAATCTTGTAGTTTGGCTTTCCATTTGAACTCTGATCCCACAAAAAAGGTGAAGGTTCAATATTGTCTTCTATTTCCTTTGATTGATTTGTCCGTAGAGAGGTGACACCAGTTTCAAATTTTGAGGCTGAGCAGTTGTTTGGCGTTGTTCCCACTTTTTGTTTCATTCTTTTCACCCTAACACCCCGAAAAATTGCCCTTTAAAGTTCTATAGA</canonical>
            <polymorphic>CTATAGAAAATGAACCTCTACCGTGTGTTTTGGTTTTCAAAAATACTGAAATAGTGAGGTAATCAAAAAATTAAGACTTTATTTTTAGAGAATCAAAATATAATATCTTGTAGGAAAACCCAGGACTGCCGGTTTTTGTGCAGAACGTTACCCCAATAGTAATTCTTAAACTCCGTCATTTTCTAGTTTTCATCCTAGATCCATTACAATTTCTATAATCAAATTATACATTAATTCGTTTGGTTTTGGACCAAAGTTTCCATTCCGAGAACTTCTACCTAATATCCGGCTCCCGGTCCCCCTTATATCCTCATGTTGCATACAGAAAATCTCTGACCCTTCTAATCCCATCAATGCTTCTAATCCTGTTAATTTTGGGGTATTTAAGCGAATATGAGGTCTGCAAATCTTGTCTTAGAGTCTAATTCCAAGAATCAGTATACTGTAGTTTAAGAGATTTAAATTTCTCAAAAACAAAATCAAACTGATTTCTGTCTTTYCAAAAATACAATTACTAGAGTCTCTATCAGGAGTCATTTTTCAATTTCTACGAAAACTACAAAACTTCTTGTTGACTCTCTTAAAATTTCCAAAATTGATCATTGACTGGATTATTGACCAAACTAAATAAAAAATTCAAGGAAATAAATTTTCTTGAAAACAATGGACCATCTGAGATTCTGAAAATATTTCCAGAATTAGCTTGAATAATTTATCTCTGTCTGCTGAGTTTGTAGTTTGGTTTTCTTCAAAAATCCTAAAAATTCTCAATTTTCAAAGTTTGAAAAATCTTGTAGTTTGGCTTTCCATTTGAACTCTGATCCCACAAAAAAGGTGAAGGTTCAATATTGTCTTCTATTTCCTTTGATTGATTTGTCCGTAGAGAGGTGACACCAGTTTCAAATTTTGAGGCTGAGCAGTTGTTTGGCGTTGTTCCCACTTTTTGTTTCATTCTTTTCACCCTAACACCCCGAAAAATTGCCCTTTAAAGTTCTATAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTAAGCGAATATGAGGTCTG</pcr_primer_p1>
		<pcr_primer_p2>TTAGTTTGGTCAATAATCCAGTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TATTTAAGCGAATATGAGGTCTGCAAATCTTGTCTTAGAGTCTAATTCCAAGAATCAGTATACTGTAGTTTAAGAGATTTAAATTTCTCAAAAACAAAATCAAACTGATTTCTGTCTTTCCAAAAATACAATTACTAGAGTCTCTATCAGGAGTCATTTTTCAATTTCTACGAAAACTACAAAACTTCTTGTTGACTCTCTTAAAATTTCCAAAATTGATCATTGACTGGATTATTGACCAAACTAA</canonical_amplicon>
		<polymorphic_amplicon>TATTTAAGCGAATATGAGGTCTGCAAATCTTGTCTTAGAGTCTAATTCCAAGAATCAGTATACTGTAGTTTAAGAGATTTAAATTTCTCAAAAACAAAATCAAACTGATTTCTGTCTTTYCAAAAATACAATTACTAGAGTCTCTATCAGGAGTCATTTTTCAATTTCTACGAAAACTACAAAACTTCTTGTTGACTCTCTTAAAATTTCCAAAATTGATCATTGACTGGATTATTGACCAAACTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34650</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>349115</contig_pos>
        <strand>+</strand>
        <context>TCTTAAAATT[C/T]CCAAAATTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCAATTTCTACGAAAACTACAAAACTTCTTGTTGACTCTCTTAAAATT</left_flank>
        <right_flank>CCAAAATTGATCATTGACTGGATTATTGACCAAACTAAATAAAAAATTCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATCAAAATATAATATCTTGTAGGAAAACCCAGGACTGCCGGTTTTTGTGCAGAACGTTACCCCAATAGTAATTCTTAAACTCCGTCATTTTCTAGTTTTCATCCTAGATCCATTACAATTTCTATAATCAAATTATACATTAATTCGTTTGGTTTTGGACCAAAGTTTCCATTCCGAGAACTTCTACCTAATATCCGGCTCCCGGTCCCCCTTATATCCTCATGTTGCATACAGAAAATCTCTGACCCTTCTAATCCCATCAATGCTTCTAATCCTGTTAATTTTGGGGTATTTAAGCGAATATGAGGTCTGCAAATCTTGTCTTAGAGTCTAATTCCAAGAATCAGTATACTGTAGTTTAAGAGATTTAAATTTCTCAAAAACAAAATCAAACTGATTTCTGTCTTTCCAAAAATACAATTACTAGAGTCTCTATCAGGAGTCATTTTTCAATTTCTACGAAAACTACAAAACTTCTTGTTGACTCTCTTAAAATTTCCAAAATTGATCATTGACTGGATTATTGACCAAACTAAATAAAAAATTCAAGGAAATAAATTTTCTTGAAAACAATGGACCATCTGAGATTCTGAAAATATTTCCAGAATTAGCTTGAATAATTTATCTCTGTCTGCTGAGTTTGTAGTTTGGTTTTCTTCAAAAATCCTAAAAATTCTCAATTTTCAAAGTTTGAAAAATCTTGTAGTTTGGCTTTCCATTTGAACTCTGATCCCACAAAAAAGGTGAAGGTTCAATATTGTCTTCTATTTCCTTTGATTGATTTGTCCGTAGAGAGGTGACACCAGTTTCAAATTTTGAGGCTGAGCAGTTGTTTGGCGTTGTTCCCACTTTTTGTTTCATTCTTTTCACCCTAACACCCCGAAAAATTGCCCTTTAAAGTTCTATAGATTTAAAAGGATTAAAAACCAAAAATTGGAGAGAGAGAGAAAATGTAGAGGGTCTAAAAAGGAACCCACAAACTCTATTTTAGGTAGGGT</canonical>
            <polymorphic>GAATCAAAATATAATATCTTGTAGGAAAACCCAGGACTGCCGGTTTTTGTGCAGAACGTTACCCCAATAGTAATTCTTAAACTCCGTCATTTTCTAGTTTTCATCCTAGATCCATTACAATTTCTATAATCAAATTATACATTAATTCGTTTGGTTTTGGACCAAAGTTTCCATTCCGAGAACTTCTACCTAATATCCGGCTCCCGGTCCCCCTTATATCCTCATGTTGCATACAGAAAATCTCTGACCCTTCTAATCCCATCAATGCTTCTAATCCTGTTAATTTTGGGGTATTTAAGCGAATATGAGGTCTGCAAATCTTGTCTTAGAGTCTAATTCCAAGAATCAGTATACTGTAGTTTAAGAGATTTAAATTTCTCAAAAACAAAATCAAACTGATTTCTGTCTTTCCAAAAATACAATTACTAGAGTCTCTATCAGGAGTCATTTTTCAATTTCTACGAAAACTACAAAACTTCTTGTTGACTCTCTTAAAATTYCCAAAATTGATCATTGACTGGATTATTGACCAAACTAAATAAAAAATTCAAGGAAATAAATTTTCTTGAAAACAATGGACCATCTGAGATTCTGAAAATATTTCCAGAATTAGCTTGAATAATTTATCTCTGTCTGCTGAGTTTGTAGTTTGGTTTTCTTCAAAAATCCTAAAAATTCTCAATTTTCAAAGTTTGAAAAATCTTGTAGTTTGGCTTTCCATTTGAACTCTGATCCCACAAAAAAGGTGAAGGTTCAATATTGTCTTCTATTTCCTTTGATTGATTTGTCCGTAGAGAGGTGACACCAGTTTCAAATTTTGAGGCTGAGCAGTTGTTTGGCGTTGTTCCCACTTTTTGTTTCATTCTTTTCACCCTAACACCCCGAAAAATTGCCCTTTAAAGTTCTATAGATTTAAAAGGATTAAAAACCAAAAATTGGAGAGAGAGAGAAAATGTAGAGGGTCTAAAAAGGAACCCACAAACTCTATTTTAGGTAGGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>372 187 140 123 115 49 14</canonical_bands>
                <polymorphic_bands>372 187 172 140 115 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTATCAGGAGTCATTTTTCAAT</pcr_primer_p1>
		<pcr_primer_p2>TTGAGAATTTTTAGGATTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTATCAGGAGTCATTTTTCAATTTCTACGAAAACTACAAAACTTCTTGTTGACTCTCTTAAAATTTCCAAAATTGATCATTGACTGGATTATTGACCAAACTAAATAAAAAATTCAAGGAAATAAATTTTCTTGAAAACAATGGACCATCTGAGATTCTGAAAATATTTCCAGAATTAGCTTGAATAATTTATCTCTGTCTGCTGAGTTTGTAGTTTGGTTTTCTTCAAAAATCCTAAAAATTCTCAA</canonical_amplicon>
		<polymorphic_amplicon>TCTATCAGGAGTCATTTTTCAATTTCTACGAAAACTACAAAACTTCTTGTTGACTCTCTTAAAATTYCCAAAATTGATCATTGACTGGATTATTGACCAAACTAAATAAAAAATTCAAGGAAATAAATTTTCTTGAAAACAATGGACCATCTGAGATTCTGAAAATATTTCCAGAATTAGCTTGAATAATTTATCTCTGTCTGCTGAGTTTGTAGTTTGGTTTTCTTCAAAAATCCTAAAAATTCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34651</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>349718</contig_pos>
        <strand>+</strand>
        <context>TCTTAAAAGC[C/T]GAAACTTGAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACGAAAACTTAGGAGCGAAGAATTCAAAAACAAGAAGCTCTTAAAAGC</left_flank>
        <right_flank>GAAACTTGACCCCTATTTTTCGAAAATTTTCCCCGAACAGTAGTCTAGAA</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGAATTAGCTTGAATAATTTATCTCTGTCTGCTGAGTTTGTAGTTTGGTTTTCTTCAAAAATCCTAAAAATTCTCAATTTTCAAAGTTTGAAAAATCTTGTAGTTTGGCTTTCCATTTGAACTCTGATCCCACAAAAAAGGTGAAGGTTCAATATTGTCTTCTATTTCCTTTGATTGATTTGTCCGTAGAGAGGTGACACCAGTTTCAAATTTTGAGGCTGAGCAGTTGTTTGGCGTTGTTCCCACTTTTTGTTTCATTCTTTTCACCCTAACACCCCGAAAAATTGCCCTTTAAAGTTCTATAGATTTAAAAGGATTAAAAACCAAAAATTGGAGAGAGAGAGAAAATGTAGAGGGTCTAAAAAGGAACCCACAAACTCTATTTTAGGTAGGGTTCGAAAGTTTGAGAGCCAAAAAAGATGCGAATGTTTTTAATTTCGGTGGCGGAAACGAAAACTTAGGAGCGAAGAATTCAAAAACAAGAAGCTCTTAAAAGCCGAAACTTGACCCCTATTTTTCGAAAATTTTCCCCGAACAGTAGTCTAGAAATCTCTGAAATATCAGATATCACTATATTTACCAAAACTTCAGTTTCTCAGAACTTACTTTTTTTGAAATCCACCATCACCATCACCACTACACATTTTTGATCCACACAATAGAATATTCTGAGAGGCCATTCTTTTGTTGTATATCATAAGCCAGACATAATAAAAAAGGAAATGTGTGGTATATTTTTTTTGGGTTCTTGAAGTGAAAAGAGAAAAAAAGAACTTTTGACTGGGTGTTTTGAATCGAAATTGAAATTTATCGAACATCGTAAATCCAGAATGACAAAGATTGTACGGATTTAAATTTTGAGGTTCATCGAACACTAGGAAATAGATTTTTTAATTATAGAATTCAAAGAGTTCCTAAGTTCAGAAGATCTTCAGAATCACTGGATGTTTAGGTCTAGATTTTAGGTTTAAGTATTCCAAAATTCGAAAATACTGATT</canonical>
            <polymorphic>CCAGAATTAGCTTGAATAATTTATCTCTGTCTGCTGAGTTTGTAGTTTGGTTTTCTTCAAAAATCCTAAAAATTCTCAATTTTCAAAGTTTGAAAAATCTTGTAGTTTGGCTTTCCATTTGAACTCTGATCCCACAAAAAAGGTGAAGGTTCAATATTGTCTTCTATTTCCTTTGATTGATTTGTCCGTAGAGAGGTGACACCAGTTTCAAATTTTGAGGCTGAGCAGTTGTTTGGCGTTGTTCCCACTTTTTGTTTCATTCTTTTCACCCTAACACCCCGAAAAATTGCCCTTTAAAGTTCTATAGATTTAAAAGGATTAAAAACCAAAAATTGGAGAGAGAGAGAAAATGTAGAGGGTCTAAAAAGGAACCCACAAACTCTATTTTAGGTAGGGTTCGAAAGTTTGAGAGCCAAAAAAGATGCGAATGTTTTTAATTTCGGTGGCGGAAACGAAAACTTAGGAGCGAAGAATTCAAAAACAAGAAGCTCTTAAAAGCYGAAACTTGACCCCTATTTTTCGAAAATTTTCCCCGAACAGTAGTCTAGAAATCTCTGAAATATCAGATATCACTATATTTACCAAAACTTCAGTTTCTCAGAACTTACTTTTTTTGAAATCCACCATCACCATCACCACTACACATTTTTGATCCACACAATAGAATATTCTGAGAGGCCATTCTTTTGTTGTATATCATAAGCCAGACATAATAAAAAAGGAAATGTGTGGTATATTTTTTTTGGGTTCTTGAAGTGAAAAGAGAAAAAAAGAACTTTTGACTGGGTGTTTTGAATCGAAATTGAAATTTATCGAACATCGTAAATCCAGAATGACAAAGATTGTACGGATTTAAATTTTGAGGTTCATCGAACACTAGGAAATAGATTTTTTAATTATAGAATTCAAAGAGTTCCTAAGTTCAGAAGATCTTCAGAATCACTGGATGTTTAGGTCTAGATTTTAGGTTTAAGTATTCCAAAATTCGAAAATACTGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>297 192 180 110 100 76 25 10 10</canonical_bands>
                <polymorphic_bands>297 192 190 110 100 76 25 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGAGGGTCTAAAAAGGAACC</pcr_primer_p1>
		<pcr_primer_p2>CTGAGAAACTGAAGTTTTGGTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAGAGGGTCTAAAAAGGAACCCACAAACTCTATTTTAGGTAGGGTTCGAAAGTTTGAGAGCCAAAAAAGATGCGAATGTTTTTAATTTCGGTGGCGGAAACGAAAACTTAGGAGCGAAGAATTCAAAAACAAGAAGCTCTTAAAAGCCGAAACTTGACCCCTATTTTTCGAAAATTTTCCCCGAACAGTAGTCTAGAAATCTCTGAAATATCAGATATCACTATATTTACCAAAACTTCAGTTTCTCAG</canonical_amplicon>
		<polymorphic_amplicon>GTAGAGGGTCTAAAAAGGAACCCACAAACTCTATTTTAGGTAGGGTTCGAAAGTTTGAGAGCCAAAAAAGATGCGAATGTTTTTAATTTCGGTGGCGGAAACGAAAACTTAGGAGCGAAGAATTCAAAAACAAGAAGCTCTTAAAAGCYGAAACTTGACCCCTATTTTTCGAAAATTTTCCCCGAACAGTAGTCTAGAAATCTCTGAAATATCAGATATCACTATATTTACCAAAACTTCAGTTTCTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34652</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>351197</contig_pos>
        <strand></strand>
        <context>TATTAAAAAG[A/G]CAAAATCCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGAATTATTCTCATTTTCCTCCCAAAAATTTCTTAACCATATTAAAAAG</left_flank>
        <right_flank>CAAAATCCTTCCGGATTTCTTCATGTCACACACCTTATATCCTTAATCAC</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGACCACTGGGTGATATATGGGTGCCTACTTATTTCAATTCTTGCGTGACCAAGTTTGGACCCCATCATTTGGCAGCTCTATCATGAGACGCACCTTCTGAAAAGTGTTCTTCAATTTGAAATTTGACTTTTTAAAGGTGGTGGGGATTTAAAGAATATTTCCTCGAATTTCCAATGTTGGAGGTGCAACGCTGCTACCAGCTTGGCTACTATGGCACAGAATGCATACCTTAACACCAATAAATCTTAAAAATCAAAAATCAATTTCTCCCCACTTTAAATCAACTTCTCATATTTTAAATTTTCTGGAGGCATTTTTCCGACACCTTCAGGCACTACACAATATTTTTTTTCCTTGTTCCGCGTCACAATTATTTCACCTGCATTGTTTGATTAAATTCCAGACCAAGTATCAATTGCAGACACAATATATGTCATTTTTTGTTCTCTAGAATTATTCTCATTTTCCTCCCAAAAATTTCTTAACCATATTAAAAAGACAAAATCCTTCCGGATTTCTTCATGTCACACACCTTATATCCTTAATCACTTTCGGCTTACTTGCGGGTTGCAAATATTGCTTTTAGCGATATATTATAATCCCCATCCAATCAAATCCCAACCCCCTACTCAAATTCTCCCTGACAAGAATTGGTTAGTATTTATAACCATGCATTTTTGAACGTTTCGTCTGTCTCTTTCAGTTGTCTCGATACTTTTTTTCTTCCTTGTTTCCACTCTTCCTCATTATCCAATTCTTCTCATTCGTTCCTTTTTTTGAATATTTACATTTATTGTTAGATGTCCTGGGCTCGATGACGCGTCATAAGTTGTTTTAACTCACTCTAGAAGTCGTGCGTAGCAGCGATAGATTCGTGGAAAAGGTCGGTCTGGAGGAGATACCAAAAACACCTATAGATCAAGAGACTATGACTTCTGAGCTTGAAGCTAGTGAATCTAGATCCTAAAATCCACTGGCGTCACAATTAGATCCGAGAGT</canonical>
            <polymorphic>GGACCACTGGGTGATATATGGGTGCCTACTTATTTCAATTCTTGCGTGACCAAGTTTGGACCCCATCATTTGGCAGCTCTATCATGAGACGCACCTTCTGAAAAGTGTTCTTCAATTTGAAATTTGACTTTTTAAAGGTGGTGGGGATTTAAAGAATATTTCCTCGAATTTCCAATGTTGGAGGTGCAACGCTGCTACCAGCTTGGCTACTATGGCACAGAATGCATACCTTAACACCAATAAATCTTAAAAATCAAAAATCAATTTCTCCCCACTTTAAATCAACTTCTCATATTTTAAATTTTCTGGAGGCATTTTTCCGACACCTTCAGGCACTACACAATATTTTTTTTCCTTGTTCCGCGTCACAATTATTTCACCTGCATTGTTTGATTAAATTCCAGACCAAGTATCAATTGCAGACACAATATATGTCATTTTTTGTTCTCTAGAATTATTCTCATTTTCCTCCCAAAAATTTCTTAACCATATTAAAAAGRCAAAATCCTTCCGGATTTCTTCATGTCACACACCTTATATCCTTAATCACTTTCGGCTTACTTGCGGGTTGCAAATATTGCTTTTAGCGATATATTATAATCCCCATCCAATCAAATCCCAACCCCCTACTCAAATTCTCCCTGACAAGAATTGGTTAGTATTTATAACCATGCATTTTTGAACGTTTCGTCTGTCTCTTTCAGTTGTCTCGATACTTTTTTTCTTCCTTGTTTCCACTCTTCCTCATTATCCAATTCTTCTCATTCGTTCCTTTTTTTGAATATTTACATTTATTGTTAGATGTCCTGGGCTCGATGACGCGTCATAAGTTGTTTTAACTCACTCTAGAAGTCGTGCGTAGCAGCGATAGATTCGTGGAAAAGGTCGGTCTGGAGGAGATACCAAAAACACCTATAGATCAAGAGACTATGACTTCTGAGCTTGAAGCTAGTGAATCTAGATCCTAAAATCCACTGGCGTCACAATTAGATCCGAGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATTCCAGACCAAGTATCAAT</pcr_primer_p1>
		<pcr_primer_p2>GTCAGGGAGAATTTGAGTAGG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAAATTCCAGACCAAGTATCAATTGCAGACACAATATATGTCATTTTTTGTTCTCTAGAATTATTCTCATTTTCCTCCCAAAAATTTCTTAACCATATTAAAAAGACAAAATCCTTCCGGATTTCTTCATGTCACACACCTTATATCCTTAATCACTTTCGGCTTACTTGCGGGTTGCAAATATTGCTTTTAGCGATATATTATAATCCCCATCCAATCAAATCCCAACCCCCTACTCAAATTCTCCCTGAC</canonical_amplicon>
		<polymorphic_amplicon>TAAATTCCAGACCAAGTATCAATTGCAGACACAATATATGTCATTTTTTGTTCTCTAGAATTATTCTCATTTTCCTCCCAAAAATTTCTTAACCATATTAAAAAGRCAAAATCCTTCCGGATTTCTTCATGTCACACACCTTATATCCTTAATCACTTTCGGCTTACTTGCGGGTTGCAAATATTGCTTTTAGCGATATATTATAATCCCCATCCAATCAAATCCCAACCCCCTACTCAAATTCTCCCTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34653</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>351278</contig_pos>
        <strand>+</strand>
        <context>GCAAATATTG[C/G]TTTTAGCGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CACCTTATATCCTTAATCACTTTCGGCTTACTTGCGGGTTGCAAATATTG</left_flank>
        <right_flank>TTTTAGCGATATATTATAATCCCCATCCAATCAAATCCCAACCCCCTACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATGAGACGCACCTTCTGAAAAGTGTTCTTCAATTTGAAATTTGACTTTTTAAAGGTGGTGGGGATTTAAAGAATATTTCCTCGAATTTCCAATGTTGGAGGTGCAACGCTGCTACCAGCTTGGCTACTATGGCACAGAATGCATACCTTAACACCAATAAATCTTAAAAATCAAAAATCAATTTCTCCCCACTTTAAATCAACTTCTCATATTTTAAATTTTCTGGAGGCATTTTTCCGACACCTTCAGGCACTACACAATATTTTTTTTCCTTGTTCCGCGTCACAATTATTTCACCTGCATTGTTTGATTAAATTCCAGACCAAGTATCAATTGCAGACACAATATATGTCATTTTTTGTTCTCTAGAATTATTCTCATTTTCCTCCCAAAAATTTCTTAACCATATTAAAAAGACAAAATCCTTCCGGATTTCTTCATGTCACACACCTTATATCCTTAATCACTTTCGGCTTACTTGCGGGTTGCAAATATTGCTTTTAGCGATATATTATAATCCCCATCCAATCAAATCCCAACCCCCTACTCAAATTCTCCCTGACAAGAATTGGTTAGTATTTATAACCATGCATTTTTGAACGTTTCGTCTGTCTCTTTCAGTTGTCTCGATACTTTTTTTCTTCCTTGTTTCCACTCTTCCTCATTATCCAATTCTTCTCATTCGTTCCTTTTTTTGAATATTTACATTTATTGTTAGATGTCCTGGGCTCGATGACGCGTCATAAGTTGTTTTAACTCACTCTAGAAGTCGTGCGTAGCAGCGATAGATTCGTGGAAAAGGTCGGTCTGGAGGAGATACCAAAAACACCTATAGATCAAGAGACTATGACTTCTGAGCTTGAAGCTAGTGAATCTAGATCCTAAAATCCACTGGCGTCACAATTAGATCCGAGAGTATCGTGTATCCTAGACTGTGTTCGAAATTTGAAAAAAAAACAAGGAAGTGTCTTCCTTATTTCTGCAACAAAGGAAACTAC</canonical>
            <polymorphic>TCATGAGACGCACCTTCTGAAAAGTGTTCTTCAATTTGAAATTTGACTTTTTAAAGGTGGTGGGGATTTAAAGAATATTTCCTCGAATTTCCAATGTTGGAGGTGCAACGCTGCTACCAGCTTGGCTACTATGGCACAGAATGCATACCTTAACACCAATAAATCTTAAAAATCAAAAATCAATTTCTCCCCACTTTAAATCAACTTCTCATATTTTAAATTTTCTGGAGGCATTTTTCCGACACCTTCAGGCACTACACAATATTTTTTTTCCTTGTTCCGCGTCACAATTATTTCACCTGCATTGTTTGATTAAATTCCAGACCAAGTATCAATTGCAGACACAATATATGTCATTTTTTGTTCTCTAGAATTATTCTCATTTTCCTCCCAAAAATTTCTTAACCATATTAAAAAGACAAAATCCTTCCGGATTTCTTCATGTCACACACCTTATATCCTTAATCACTTTCGGCTTACTTGCGGGTTGCAAATATTGSTTTTAGCGATATATTATAATCCCCATCCAATCAAATCCCAACCCCCTACTCAAATTCTCCCTGACAAGAATTGGTTAGTATTTATAACCATGCATTTTTGAACGTTTCGTCTGTCTCTTTCAGTTGTCTCGATACTTTTTTTCTTCCTTGTTTCCACTCTTCCTCATTATCCAATTCTTCTCATTCGTTCCTTTTTTTGAATATTTACATTTATTGTTAGATGTCCTGGGCTCGATGACGCGTCATAAGTTGTTTTAACTCACTCTAGAAGTCGTGCGTAGCAGCGATAGATTCGTGGAAAAGGTCGGTCTGGAGGAGATACCAAAAACACCTATAGATCAAGAGACTATGACTTCTGAGCTTGAAGCTAGTGAATCTAGATCCTAAAATCCACTGGCGTCACAATTAGATCCGAGAGTATCGTGTATCCTAGACTGTGTTCGAAATTTGAAAAAAAAACAAGGAAGTGTCTTCCTTATTTCTGCAACAAAGGAAACTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCANNNNNTGC</site>
                <isoschizomers>
                    <enzyme>ApaBI</enzyme>
                    <enzyme>BstAPI</enzyme>
                </isoschizomers>
                <canonical_bands>503 356 141</canonical_bands>
                <polymorphic_bands>859 141</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 356 131 9</canonical_bands>
                <polymorphic_bands>869 131</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCCAAAAATTTCTTAACCATA</pcr_primer_p1>
		<pcr_primer_p2>AAAGTATCGAGACAACTGAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCCAAAAATTTCTTAACCATATTAAAAAGACAAAATCCTTCCGGATTTCTTCATGTCACACACCTTATATCCTTAATCACTTTCGGCTTACTTGCGGGTTGCAAATATTGCTTTTAGCGATATATTATAATCCCCATCCAATCAAATCCCAACCCCCTACTCAAATTCTCCCTGACAAGAATTGGTTAGTATTTATAACCATGCATTTTTGAACGTTTCGTCTGTCTCTTTCAGTTGTCTCGATACTTT</canonical_amplicon>
		<polymorphic_amplicon>TCCCAAAAATTTCTTAACCATATTAAAAAGACAAAATCCTTCCGGATTTCTTCATGTCACACACCTTATATCCTTAATCACTTTCGGCTTACTTGCGGGTTGCAAATATTGSTTTTAGCGATATATTATAATCCCCATCCAATCAAATCCCAACCCCCTACTCAAATTCTCCCTGACAAGAATTGGTTAGTATTTATAACCATGCATTTTTGAACGTTTCGTCTGTCTCTTTCAGTTGTCTCGATACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34654</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>351387</contig_pos>
        <strand>+</strand>
        <context>TGAACGTTTC[G/T]TCTGTCTCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCCTGACAAGAATTGGTTAGTATTTATAACCATGCATTTTTGAACGTTTC</left_flank>
        <right_flank>TCTGTCTCTTTCAGTTGTCTCGATACTTTTTTTCTTCCTTGTTTCCACTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTGCTACCAGCTTGGCTACTATGGCACAGAATGCATACCTTAACACCAATAAATCTTAAAAATCAAAAATCAATTTCTCCCCACTTTAAATCAACTTCTCATATTTTAAATTTTCTGGAGGCATTTTTCCGACACCTTCAGGCACTACACAATATTTTTTTTCCTTGTTCCGCGTCACAATTATTTCACCTGCATTGTTTGATTAAATTCCAGACCAAGTATCAATTGCAGACACAATATATGTCATTTTTTGTTCTCTAGAATTATTCTCATTTTCCTCCCAAAAATTTCTTAACCATATTAAAAAGACAAAATCCTTCCGGATTTCTTCATGTCACACACCTTATATCCTTAATCACTTTCGGCTTACTTGCGGGTTGCAAATATTGCTTTTAGCGATATATTATAATCCCCATCCAATCAAATCCCAACCCCCTACTCAAATTCTCCCTGACAAGAATTGGTTAGTATTTATAACCATGCATTTTTGAACGTTTCGTCTGTCTCTTTCAGTTGTCTCGATACTTTTTTTCTTCCTTGTTTCCACTCTTCCTCATTATCCAATTCTTCTCATTCGTTCCTTTTTTTGAATATTTACATTTATTGTTAGATGTCCTGGGCTCGATGACGCGTCATAAGTTGTTTTAACTCACTCTAGAAGTCGTGCGTAGCAGCGATAGATTCGTGGAAAAGGTCGGTCTGGAGGAGATACCAAAAACACCTATAGATCAAGAGACTATGACTTCTGAGCTTGAAGCTAGTGAATCTAGATCCTAAAATCCACTGGCGTCACAATTAGATCCGAGAGTATCGTGTATCCTAGACTGTGTTCGAAATTTGAAAAAAAAACAAGGAAGTGTCTTCCTTATTTCTGCAACAAAGGAAACTACACTAAACTTTGCTCGAGTCTGAACTTGACAGGACGTCGACAACCACAAAAAAAACATACAAAAACAGATAGTTTGTCTTTGCTCCTCGAGCTTGTCCTTTTCTGGAACG</canonical>
            <polymorphic>GCTGCTACCAGCTTGGCTACTATGGCACAGAATGCATACCTTAACACCAATAAATCTTAAAAATCAAAAATCAATTTCTCCCCACTTTAAATCAACTTCTCATATTTTAAATTTTCTGGAGGCATTTTTCCGACACCTTCAGGCACTACACAATATTTTTTTTCCTTGTTCCGCGTCACAATTATTTCACCTGCATTGTTTGATTAAATTCCAGACCAAGTATCAATTGCAGACACAATATATGTCATTTTTTGTTCTCTAGAATTATTCTCATTTTCCTCCCAAAAATTTCTTAACCATATTAAAAAGACAAAATCCTTCCGGATTTCTTCATGTCACACACCTTATATCCTTAATCACTTTCGGCTTACTTGCGGGTTGCAAATATTGCTTTTAGCGATATATTATAATCCCCATCCAATCAAATCCCAACCCCCTACTCAAATTCTCCCTGACAAGAATTGGTTAGTATTTATAACCATGCATTTTTGAACGTTTCKTCTGTCTCTTTCAGTTGTCTCGATACTTTTTTTCTTCCTTGTTTCCACTCTTCCTCATTATCCAATTCTTCTCATTCGTTCCTTTTTTTGAATATTTACATTTATTGTTAGATGTCCTGGGCTCGATGACGCGTCATAAGTTGTTTTAACTCACTCTAGAAGTCGTGCGTAGCAGCGATAGATTCGTGGAAAAGGTCGGTCTGGAGGAGATACCAAAAACACCTATAGATCAAGAGACTATGACTTCTGAGCTTGAAGCTAGTGAATCTAGATCCTAAAATCCACTGGCGTCACAATTAGATCCGAGAGTATCGTGTATCCTAGACTGTGTTCGAAATTTGAAAAAAAAACAAGGAAGTGTCTTCCTTATTTCTGCAACAAAGGAAACTACACTAAACTTTGCTCGAGTCTGAACTTGACAGGACGTCGACAACCACAAAAAAAACATACAAAAACAGATAGTTTGTCTTTGCTCCTCGAGCTTGTCCTTTTCTGGAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATGTCACACACCTTATATCCT</pcr_primer_p1>
		<pcr_primer_p2>GAATGAGAAGAATTGGATAATGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCATGTCACACACCTTATATCCTTAATCACTTTCGGCTTACTTGCGGGTTGCAAATATTGCTTTTAGCGATATATTATAATCCCCATCCAATCAAATCCCAACCCCCTACTCAAATTCTCCCTGACAAGAATTGGTTAGTATTTATAACCATGCATTTTTGAACGTTTCGTCTGTCTCTTTCAGTTGTCTCGATACTTTTTTTCTTCCTTGTTTCCACTCTTCCTCATTATCCAATTCTTCTCATTC</canonical_amplicon>
		<polymorphic_amplicon>TCATGTCACACACCTTATATCCTTAATCACTTTCGGCTTACTTGCGGGTTGCAAATATTGCTTTTAGCGATATATTATAATCCCCATCCAATCAAATCCCAACCCCCTACTCAAATTCTCCCTGACAAGAATTGGTTAGTATTTATAACCATGCATTTTTGAACGTTTCKTCTGTCTCTTTCAGTTGTCTCGATACTTTTTTTCTTCCTTGTTTCCACTCTTCCTCATTATCCAATTCTTCTCATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34655</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>351529</contig_pos>
        <strand>+</strand>
        <context>CGTCATAAGT[G/T]GTTTTAACTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATATTTACATTTATTGTTAGATGTCCTGGGCTCGATGACGCGTCATAAGT</left_flank>
        <right_flank>GTTTTAACTCACTCTAGAAGTCGTGCGTAGCAGCGATAGATTCGTGGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCACTACACAATATTTTTTTTCCTTGTTCCGCGTCACAATTATTTCACCTGCATTGTTTGATTAAATTCCAGACCAAGTATCAATTGCAGACACAATATATGTCATTTTTTGTTCTCTAGAATTATTCTCATTTTCCTCCCAAAAATTTCTTAACCATATTAAAAAGACAAAATCCTTCCGGATTTCTTCATGTCACACACCTTATATCCTTAATCACTTTCGGCTTACTTGCGGGTTGCAAATATTGCTTTTAGCGATATATTATAATCCCCATCCAATCAAATCCCAACCCCCTACTCAAATTCTCCCTGACAAGAATTGGTTAGTATTTATAACCATGCATTTTTGAACGTTTCGTCTGTCTCTTTCAGTTGTCTCGATACTTTTTTTCTTCCTTGTTTCCACTCTTCCTCATTATCCAATTCTTCTCATTCGTTCCTTTTTTTGAATATTTACATTTATTGTTAGATGTCCTGGGCTCGATGACGCGTCATAAGTTGTTTTAACTCACTCTAGAAGTCGTGCGTAGCAGCGATAGATTCGTGGAAAAGGTCGGTCTGGAGGAGATACCAAAAACACCTATAGATCAAGAGACTATGACTTCTGAGCTTGAAGCTAGTGAATCTAGATCCTAAAATCCACTGGCGTCACAATTAGATCCGAGAGTATCGTGTATCCTAGACTGTGTTCGAAATTTGAAAAAAAAACAAGGAAGTGTCTTCCTTATTTCTGCAACAAAGGAAACTACACTAAACTTTGCTCGAGTCTGAACTTGACAGGACGTCGACAACCACAAAAAAAACATACAAAAACAGATAGTTTGTCTTTGCTCCTCGAGCTTGTCCTTTTCTGGAACGCCTTCTTCTAGGTACAGTACCTCGGGTGTCGGTTTGTAACTTCTGGTAAGAATTGGAGGGAGTTTGGCTTTTGAACGGATGTTGACCAGGTCCTGGTCGGAACTTTCCCAAAAACGGCTGTATAGCGGGCCACGGTCAGGTA</canonical>
            <polymorphic>GCACTACACAATATTTTTTTTCCTTGTTCCGCGTCACAATTATTTCACCTGCATTGTTTGATTAAATTCCAGACCAAGTATCAATTGCAGACACAATATATGTCATTTTTTGTTCTCTAGAATTATTCTCATTTTCCTCCCAAAAATTTCTTAACCATATTAAAAAGACAAAATCCTTCCGGATTTCTTCATGTCACACACCTTATATCCTTAATCACTTTCGGCTTACTTGCGGGTTGCAAATATTGCTTTTAGCGATATATTATAATCCCCATCCAATCAAATCCCAACCCCCTACTCAAATTCTCCCTGACAAGAATTGGTTAGTATTTATAACCATGCATTTTTGAACGTTTCGTCTGTCTCTTTCAGTTGTCTCGATACTTTTTTTCTTCCTTGTTTCCACTCTTCCTCATTATCCAATTCTTCTCATTCGTTCCTTTTTTTGAATATTTACATTTATTGTTAGATGTCCTGGGCTCGATGACGCGTCATAAGTKGTTTTAACTCACTCTAGAAGTCGTGCGTAGCAGCGATAGATTCGTGGAAAAGGTCGGTCTGGAGGAGATACCAAAAACACCTATAGATCAAGAGACTATGACTTCTGAGCTTGAAGCTAGTGAATCTAGATCCTAAAATCCACTGGCGTCACAATTAGATCCGAGAGTATCGTGTATCCTAGACTGTGTTCGAAATTTGAAAAAAAAACAAGGAAGTGTCTTCCTTATTTCTGCAACAAAGGAAACTACACTAAACTTTGCTCGAGTCTGAACTTGACAGGACGTCGACAACCACAAAAAAAACATACAAAAACAGATAGTTTGTCTTTGCTCCTCGAGCTTGTCCTTTTCTGGAACGCCTTCTTCTAGGTACAGTACCTCGGGTGTCGGTTTGTAACTTCTGGTAAGAATTGGAGGGAGTTTGGCTTTTGAACGGATGTTGACCAGGTCCTGGTCGGAACTTTCCCAAAAACGGCTGTATAGCGGGCCACGGTCAGGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGTTGTCTCGATACTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTCAAGCTCAGAAGTCATAGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGTTGTCTCGATACTTTTTTTCTTCCTTGTTTCCACTCTTCCTCATTATCCAATTCTTCTCATTCGTTCCTTTTTTTGAATATTTACATTTATTGTTAGATGTCCTGGGCTCGATGACGCGTCATAAGTTGTTTTAACTCACTCTAGAAGTCGTGCGTAGCAGCGATAGATTCGTGGAAAAGGTCGGTCTGGAGGAGATACCAAAAACACCTATAGATCAAGAGACTATGACTTCTGAGCTTGAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGTTGTCTCGATACTTTTTTTCTTCCTTGTTTCCACTCTTCCTCATTATCCAATTCTTCTCATTCGTTCCTTTTTTTGAATATTTACATTTATTGTTAGATGTCCTGGGCTCGATGACGCGTCATAAGTKGTTTTAACTCACTCTAGAAGTCGTGCGTAGCAGCGATAGATTCGTGGAAAAGGTCGGTCTGGAGGAGATACCAAAAACACCTATAGATCAAGAGACTATGACTTCTGAGCTTGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34656</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>351566</contig_pos>
        <strand>+</strand>
        <context>GTAGCAGCGA[C/T]AGATTCGTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGCGTCATAAGTTGTTTTAACTCACTCTAGAAGTCGTGCGTAGCAGCGA</left_flank>
        <right_flank>AGATTCGTGGAAAAGGTCGGTCTGGAGGAGATACCAAAAACACCTATAGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTATTTCACCTGCATTGTTTGATTAAATTCCAGACCAAGTATCAATTGCAGACACAATATATGTCATTTTTTGTTCTCTAGAATTATTCTCATTTTCCTCCCAAAAATTTCTTAACCATATTAAAAAGACAAAATCCTTCCGGATTTCTTCATGTCACACACCTTATATCCTTAATCACTTTCGGCTTACTTGCGGGTTGCAAATATTGCTTTTAGCGATATATTATAATCCCCATCCAATCAAATCCCAACCCCCTACTCAAATTCTCCCTGACAAGAATTGGTTAGTATTTATAACCATGCATTTTTGAACGTTTCGTCTGTCTCTTTCAGTTGTCTCGATACTTTTTTTCTTCCTTGTTTCCACTCTTCCTCATTATCCAATTCTTCTCATTCGTTCCTTTTTTTGAATATTTACATTTATTGTTAGATGTCCTGGGCTCGATGACGCGTCATAAGTTGTTTTAACTCACTCTAGAAGTCGTGCGTAGCAGCGATAGATTCGTGGAAAAGGTCGGTCTGGAGGAGATACCAAAAACACCTATAGATCAAGAGACTATGACTTCTGAGCTTGAAGCTAGTGAATCTAGATCCTAAAATCCACTGGCGTCACAATTAGATCCGAGAGTATCGTGTATCCTAGACTGTGTTCGAAATTTGAAAAAAAAACAAGGAAGTGTCTTCCTTATTTCTGCAACAAAGGAAACTACACTAAACTTTGCTCGAGTCTGAACTTGACAGGACGTCGACAACCACAAAAAAAACATACAAAAACAGATAGTTTGTCTTTGCTCCTCGAGCTTGTCCTTTTCTGGAACGCCTTCTTCTAGGTACAGTACCTCGGGTGTCGGTTTGTAACTTCTGGTAAGAATTGGAGGGAGTTTGGCTTTTGAACGGATGTTGACCAGGTCCTGGTCGGAACTTTCCCAAAAACGGCTGTATAGCGGGCCACGGTCAGGTATTTGTCGGAAGTTGAAAATTGAAACACTACTAGGTCG</canonical>
            <polymorphic>AATTATTTCACCTGCATTGTTTGATTAAATTCCAGACCAAGTATCAATTGCAGACACAATATATGTCATTTTTTGTTCTCTAGAATTATTCTCATTTTCCTCCCAAAAATTTCTTAACCATATTAAAAAGACAAAATCCTTCCGGATTTCTTCATGTCACACACCTTATATCCTTAATCACTTTCGGCTTACTTGCGGGTTGCAAATATTGCTTTTAGCGATATATTATAATCCCCATCCAATCAAATCCCAACCCCCTACTCAAATTCTCCCTGACAAGAATTGGTTAGTATTTATAACCATGCATTTTTGAACGTTTCGTCTGTCTCTTTCAGTTGTCTCGATACTTTTTTTCTTCCTTGTTTCCACTCTTCCTCATTATCCAATTCTTCTCATTCGTTCCTTTTTTTGAATATTTACATTTATTGTTAGATGTCCTGGGCTCGATGACGCGTCATAAGTTGTTTTAACTCACTCTAGAAGTCGTGCGTAGCAGCGAYAGATTCGTGGAAAAGGTCGGTCTGGAGGAGATACCAAAAACACCTATAGATCAAGAGACTATGACTTCTGAGCTTGAAGCTAGTGAATCTAGATCCTAAAATCCACTGGCGTCACAATTAGATCCGAGAGTATCGTGTATCCTAGACTGTGTTCGAAATTTGAAAAAAAAACAAGGAAGTGTCTTCCTTATTTCTGCAACAAAGGAAACTACACTAAACTTTGCTCGAGTCTGAACTTGACAGGACGTCGACAACCACAAAAAAAACATACAAAAACAGATAGTTTGTCTTTGCTCCTCGAGCTTGTCCTTTTCTGGAACGCCTTCTTCTAGGTACAGTACCTCGGGTGTCGGTTTGTAACTTCTGGTAAGAATTGGAGGGAGTTTGGCTTTTGAACGGATGTTGACCAGGTCCTGGTCGGAACTTTCCCAAAAACGGCTGTATAGCGGGCCACGGTCAGGTATTTGTCGGAAGTTGAAAATTGAAACACTACTAGGTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGTTGTCTCGATACTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTCAAGCTCAGAAGTCATAGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGTTGTCTCGATACTTTTTTTCTTCCTTGTTTCCACTCTTCCTCATTATCCAATTCTTCTCATTCGTTCCTTTTTTTGAATATTTACATTTATTGTTAGATGTCCTGGGCTCGATGACGCGTCATAAGTTGTTTTAACTCACTCTAGAAGTCGTGCGTAGCAGCGATAGATTCGTGGAAAAGGTCGGTCTGGAGGAGATACCAAAAACACCTATAGATCAAGAGACTATGACTTCTGAGCTTGAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGTTGTCTCGATACTTTTTTTCTTCCTTGTTTCCACTCTTCCTCATTATCCAATTCTTCTCATTCGTTCCTTTTTTTGAATATTTACATTTATTGTTAGATGTCCTGGGCTCGATGACGCGTCATAAGTTGTTTTAACTCACTCTAGAAGTCGTGCGTAGCAGCGAYAGATTCGTGGAAAAGGTCGGTCTGGAGGAGATACCAAAAACACCTATAGATCAAGAGACTATGACTTCTGAGCTTGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34657</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>351612</contig_pos>
        <strand>+</strand>
        <context>AAAAACACCT[A/G]TAGAYCAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCGATAGATTCGTGGAAAAGGTCGGTCTGGAGGAGATACCAAAAACACCT</left_flank>
        <right_flank>TAGATCAAGAGACTATGACTTCTGAGCTTGAAGCTAGTGAATCTAGATCC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGCAGACACAATATATGTCATTTTTTGTTCTCTAGAATTATTCTCATTTTCCTCCCAAAAATTTCTTAACCATATTAAAAAGACAAAATCCTTCCGGATTTCTTCATGTCACACACCTTATATCCTTAATCACTTTCGGCTTACTTGCGGGTTGCAAATATTGCTTTTAGCGATATATTATAATCCCCATCCAATCAAATCCCAACCCCCTACTCAAATTCTCCCTGACAAGAATTGGTTAGTATTTATAACCATGCATTTTTGAACGTTTCGTCTGTCTCTTTCAGTTGTCTCGATACTTTTTTTCTTCCTTGTTTCCACTCTTCCTCATTATCCAATTCTTCTCATTCGTTCCTTTTTTTGAATATTTACATTTATTGTTAGATGTCCTGGGCTCGATGACGCGTCATAAGTTGTTTTAACTCACTCTAGAAGTCGTGCGTAGCAGCGATAGATTCGTGGAAAAGGTCGGTCTGGAGGAGATACCAAAAACACCTATAGATCAAGAGACTATGACTTCTGAGCTTGAAGCTAGTGAATCTAGATCCTAAAATCCACTGGCGTCACAATTAGATCCGAGAGTATCGTGTATCCTAGACTGTGTTCGAAATTTGAAAAAAAAACAAGGAAGTGTCTTCCTTATTTCTGCAACAAAGGAAACTACACTAAACTTTGCTCGAGTCTGAACTTGACAGGACGTCGACAACCACAAAAAAAACATACAAAAACAGATAGTTTGTCTTTGCTCCTCGAGCTTGTCCTTTTCTGGAACGCCTTCTTCTAGGTACAGTACCTCGGGTGTCGGTTTGTAACTTCTGGTAAGAATTGGAGGGAGTTTGGCTTTTGAACGGATGTTGACCAGGTCCTGGTCGGAACTTTCCCAAAAACGGCTGTATAGCGGGCCACGGTCAGGTATTTGTCGGAAGTTGAAAATTGAAACACTACTAGGTCGGAACCTTGGGCCAACCTCCTAGCAGAAGTTGCCGGTGACTTGGTCC</canonical>
            <polymorphic>ATTGCAGACACAATATATGTCATTTTTTGTTCTCTAGAATTATTCTCATTTTCCTCCCAAAAATTTCTTAACCATATTAAAAAGACAAAATCCTTCCGGATTTCTTCATGTCACACACCTTATATCCTTAATCACTTTCGGCTTACTTGCGGGTTGCAAATATTGCTTTTAGCGATATATTATAATCCCCATCCAATCAAATCCCAACCCCCTACTCAAATTCTCCCTGACAAGAATTGGTTAGTATTTATAACCATGCATTTTTGAACGTTTCGTCTGTCTCTTTCAGTTGTCTCGATACTTTTTTTCTTCCTTGTTTCCACTCTTCCTCATTATCCAATTCTTCTCATTCGTTCCTTTTTTTGAATATTTACATTTATTGTTAGATGTCCTGGGCTCGATGACGCGTCATAAGTTGTTTTAACTCACTCTAGAAGTCGTGCGTAGCAGCGATAGATTCGTGGAAAAGGTCGGTCTGGAGGAGATACCAAAAACACCTRTAGATCAAGAGACTATGACTTCTGAGCTTGAAGCTAGTGAATCTAGATCCTAAAATCCACTGGCGTCACAATTAGATCCGAGAGTATCGTGTATCCTAGACTGTGTTCGAAATTTGAAAAAAAAACAAGGAAGTGTCTTCCTTATTTCTGCAACAAAGGAAACTACACTAAACTTTGCTCGAGTCTGAACTTGACAGGACGTCGACAACCACAAAAAAAACATACAAAAACAGATAGTTTGTCTTTGCTCCTCGAGCTTGTCCTTTTCTGGAACGCCTTCTTCTAGGTACAGTACCTCGGGTGTCGGTTTGTAACTTCTGGTAAGAATTGGAGGGAGTTTGGCTTTTGAACGGATGTTGACCAGGTCCTGGTCGGAACTTTCCCAAAAACGGCTGTATAGCGGGCCACGGTCAGGTATTTGTCGGAAGTTGAAAATTGAAACACTACTAGGTCGGAACCTTGGGCCAACCTCCTAGCAGAAGTTGCCGGTGACTTGGTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTCTCATTCGTTCCTTTT</pcr_primer_p1>
		<pcr_primer_p2>GATACTCTCGGATCTAATTGTGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTCTCATTCGTTCCTTTTTTTGAATATTTACATTTATTGTTAGATGTCCTGGGCTCGATGACGCGTCATAAGTTGTTTTAACTCACTCTAGAAGTCGTGCGTAGCAGCGATAGATTCGTGGAAAAGGTCGGTCTGGAGGAGATACCAAAAACACCTATAGATCAAGAGACTATGACTTCTGAGCTTGAAGCTAGTGAATCTAGATCCTAAAATCCACTGGCGTCACAATTAGATCCGAGAGTATC</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTCTCATTCGTTCCTTTTTTTGAATATTTACATTTATTGTTAGATGTCCTGGGCTCGATGACGCGTCATAAGTTGTTTTAACTCACTCTAGAAGTCGTGCGTAGCAGCGATAGATTCGTGGAAAAGGTCGGTCTGGAGGAGATACCAAAAACACCTRTAGATCAAGAGACTATGACTTCTGAGCTTGAAGCTAGTGAATCTAGATCCTAAAATCCACTGGCGTCACAATTAGATCCGAGAGTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34658</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>351617</contig_pos>
        <strand>+</strand>
        <context>CACCTRTAGA[C/T]CAAGAGACTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGATTCGTGGAAAAGGTCGGTCTGGAGGAGATACCAAAAACACCTATAGA</left_flank>
        <right_flank>CAAGAGACTATGACTTCTGAGCTTGAAGCTAGTGAATCTAGATCCTAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGACACAATATATGTCATTTTTTGTTCTCTAGAATTATTCTCATTTTCCTCCCAAAAATTTCTTAACCATATTAAAAAGACAAAATCCTTCCGGATTTCTTCATGTCACACACCTTATATCCTTAATCACTTTCGGCTTACTTGCGGGTTGCAAATATTGCTTTTAGCGATATATTATAATCCCCATCCAATCAAATCCCAACCCCCTACTCAAATTCTCCCTGACAAGAATTGGTTAGTATTTATAACCATGCATTTTTGAACGTTTCGTCTGTCTCTTTCAGTTGTCTCGATACTTTTTTTCTTCCTTGTTTCCACTCTTCCTCATTATCCAATTCTTCTCATTCGTTCCTTTTTTTGAATATTTACATTTATTGTTAGATGTCCTGGGCTCGATGACGCGTCATAAGTTGTTTTAACTCACTCTAGAAGTCGTGCGTAGCAGCGATAGATTCGTGGAAAAGGTCGGTCTGGAGGAGATACCAAAAACACCTATAGATCAAGAGACTATGACTTCTGAGCTTGAAGCTAGTGAATCTAGATCCTAAAATCCACTGGCGTCACAATTAGATCCGAGAGTATCGTGTATCCTAGACTGTGTTCGAAATTTGAAAAAAAAACAAGGAAGTGTCTTCCTTATTTCTGCAACAAAGGAAACTACACTAAACTTTGCTCGAGTCTGAACTTGACAGGACGTCGACAACCACAAAAAAAACATACAAAAACAGATAGTTTGTCTTTGCTCCTCGAGCTTGTCCTTTTCTGGAACGCCTTCTTCTAGGTACAGTACCTCGGGTGTCGGTTTGTAACTTCTGGTAAGAATTGGAGGGAGTTTGGCTTTTGAACGGATGTTGACCAGGTCCTGGTCGGAACTTTCCCAAAAACGGCTGTATAGCGGGCCACGGTCAGGTATTTGTCGGAAGTTGAAAATTGAAACACTACTAGGTCGGAACCTTGGGCCAACCTCCTAGCAGAAGTTGCCGGTGACTTGGTCCTCCAT</canonical>
            <polymorphic>AGACACAATATATGTCATTTTTTGTTCTCTAGAATTATTCTCATTTTCCTCCCAAAAATTTCTTAACCATATTAAAAAGACAAAATCCTTCCGGATTTCTTCATGTCACACACCTTATATCCTTAATCACTTTCGGCTTACTTGCGGGTTGCAAATATTGCTTTTAGCGATATATTATAATCCCCATCCAATCAAATCCCAACCCCCTACTCAAATTCTCCCTGACAAGAATTGGTTAGTATTTATAACCATGCATTTTTGAACGTTTCGTCTGTCTCTTTCAGTTGTCTCGATACTTTTTTTCTTCCTTGTTTCCACTCTTCCTCATTATCCAATTCTTCTCATTCGTTCCTTTTTTTGAATATTTACATTTATTGTTAGATGTCCTGGGCTCGATGACGCGTCATAAGTTGTTTTAACTCACTCTAGAAGTCGTGCGTAGCAGCGATAGATTCGTGGAAAAGGTCGGTCTGGAGGAGATACCAAAAACACCTATAGAYCAAGAGACTATGACTTCTGAGCTTGAAGCTAGTGAATCTAGATCCTAAAATCCACTGGCGTCACAATTAGATCCGAGAGTATCGTGTATCCTAGACTGTGTTCGAAATTTGAAAAAAAAACAAGGAAGTGTCTTCCTTATTTCTGCAACAAAGGAAACTACACTAAACTTTGCTCGAGTCTGAACTTGACAGGACGTCGACAACCACAAAAAAAACATACAAAAACAGATAGTTTGTCTTTGCTCCTCGAGCTTGTCCTTTTCTGGAACGCCTTCTTCTAGGTACAGTACCTCGGGTGTCGGTTTGTAACTTCTGGTAAGAATTGGAGGGAGTTTGGCTTTTGAACGGATGTTGACCAGGTCCTGGTCGGAACTTTCCCAAAAACGGCTGTATAGCGGGCCACGGTCAGGTATTTGTCGGAAGTTGAAAATTGAAACACTACTAGGTCGGAACCTTGGGCCAACCTCCTAGCAGAAGTTGCCGGTGACTTGGTCCTCCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>497 431 43 29</canonical_bands>
                <polymorphic_bands>540 431 29</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>237 225 198 137 62 45 37 30 29</canonical_bands>
                <polymorphic_bands>237 225 198 137 67 62 45 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTCTCATTCGTTCCTTTT</pcr_primer_p1>
		<pcr_primer_p2>GATACTCTCGGATCTAATTGTGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTCTCATTCGTTCCTTTTTTTGAATATTTACATTTATTGTTAGATGTCCTGGGCTCGATGACGCGTCATAAGTTGTTTTAACTCACTCTAGAAGTCGTGCGTAGCAGCGATAGATTCGTGGAAAAGGTCGGTCTGGAGGAGATACCAAAAACACCTATAGATCAAGAGACTATGACTTCTGAGCTTGAAGCTAGTGAATCTAGATCCTAAAATCCACTGGCGTCACAATTAGATCCGAGAGTATC</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTCTCATTCGTTCCTTTTTTTGAATATTTACATTTATTGTTAGATGTCCTGGGCTCGATGACGCGTCATAAGTTGTTTTAACTCACTCTAGAAGTCGTGCGTAGCAGCGATAGATTCGTGGAAAAGGTCGGTCTGGAGGAGATACCAAAAACACCTATAGAYCAAGAGACTATGACTTCTGAGCTTGAAGCTAGTGAATCTAGATCCTAAAATCCACTGGCGTCACAATTAGATCCGAGAGTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34659</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>385757</contig_pos>
        <strand>+</strand>
        <context>AACAAAAAAA[C/T]ATGGTAATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCTAGTTAGCGAAAACGAAACTATATGAATATGTGAAAAAACAAAAAAA</left_flank>
        <right_flank>ATGGTAATTTGTTATGAAAATCCTTCTATCTCCTCTCGAACCGTCCGCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGAATAACAATAAAAACCCGGGCGAAATAAACGAATTCAGTTCATCAATTATCAATCAACAAAAAAACGAAAAAACTCAGTCTATCAGTTTAATCACTTGTTTGGGGGGTTTTTTTGATAAAAAATCGCGAAAAAAAGTGAGGAGAGTGATATAAATGATTCGGCGATCAGTGACGTCGTATACAACTTGACTGATCCACTCCCTTTCAAAAATTTACAAAATATAAAAATGAAAGAGAAAAGAAGAAGAAGACTGTACACAAATTTTTTTTGGAAATATGCCAAAATATTCTTTATGTCCCTGTCCTACGCCCCTTGTCATTGCCAATAGCGGCTTGTTTATCCGCTTCGGTGCGTTTATTTTGTCAACGAGATTAAAACAGCTTGTGTCCCGCCTGTCTCCCCTCTGGACGGTAAAAACTATTTTACGGTTTTGCATATTGGTTGGCTAGTTAGCGAAAACGAAACTATATGAATATGTGAAAAAACAAAAAAACATGGTAATTTGTTATGAAAATCCTTCTATCTCCTCTCGAACCGTCCGCCCTCCTCCCGTTCGAAAATTGATGTATCTCACTCTAGTGGTAATAGAGTAAAGCCAACAAGTTTTTTATAGATTTCGCGCCCAATCATTCGGGATAGTTTTGGATGGAAAACGAAGGATGAGGAGGGGGAGGACGAGGAACGGGTAATTTGGCGTTTCTTTTTTAAGGGTCTAGCTTTGGCTACTCACTGAAAAGGGAGAGAGGAGGTTTTTGGAACATTATCCAGTTGGATAACGACTAATTTTTTCGGAGAGGGGGGGGGGCGATCTAAACCAATCAGCTGATTTGATGGAAAATGAAAGGGGCGATGGAAGAAAAATGAATGAACGGAAACAAGGAAACAAGTATAGTTAGAAGAATTTTTGAGAAAATAGTGATAGGAAGAAATCAGAGTACCAGTATCGAAACATGATTTGGATGGTTTCGGAAAACTGGGTGGTCAGAAAATGTTT</canonical>
            <polymorphic>AATTGAATAACAATAAAAACCCGGGCGAAATAAACGAATTCAGTTCATCAATTATCAATCAACAAAAAAACGAAAAAACTCAGTCTATCAGTTTAATCACTTGTTTGGGGGGTTTTTTTGATAAAAAATCGCGAAAAAAAGTGAGGAGAGTGATATAAATGATTCGGCGATCAGTGACGTCGTATACAACTTGACTGATCCACTCCCTTTCAAAAATTTACAAAATATAAAAATGAAAGAGAAAAGAAGAAGAAGACTGTACACAAATTTTTTTTGGAAATATGCCAAAATATTCTTTATGTCCCTGTCCTACGCCCCTTGTCATTGCCAATAGCGGCTTGTTTATCCGCTTCGGTGCGTTTATTTTGTCAACGAGATTAAAACAGCTTGTGTCCCGCCTGTCTCCCCTCTGGACGGTAAAAACTATTTTACGGTTTTGCATATTGGTTGGCTAGTTAGCGAAAACGAAACTATATGAATATGTGAAAAAACAAAAAAAYATGGTAATTTGTTATGAAAATCCTTCTATCTCCTCTCGAACCGTCCGCCCTCCTCCCGTTCGAAAATTGATGTATCTCACTCTAGTGGTAATAGAGTAAAGCCAACAAGTTTTTTATAGATTTCGCGCCCAATCATTCGGGATAGTTTTGGATGGAAAACGAAGGATGAGGAGGGGGAGGACGAGGAACGGGTAATTTGGCGTTTCTTTTTTAAGGGTCTAGCTTTGGCTACTCACTGAAAAGGGAGAGAGGAGGTTTTTGGAACATTATCCAGTTGGATAACGACTAATTTTTTCGGAGAGGGGGGGGGGCGATCTAAACCAATCAGCTGATTTGATGGAAAATGAAAGGGGCGATGGAAGAAAAATGAATGAACGGAAACAAGGAAACAAGTATAGTTAGAAGAATTTTTGAGAAAATAGTGATAGGAAGAAATCAGAGTACCAGTATCGAAACATGATTTGGATGGTTTCGGAAAACTGGGTGGTCAGAAAATGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 456 44</canonical_bands>
                <polymorphic_bands>956 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTTTACGGTTTTGCATATTG</pcr_primer_p1>
		<pcr_primer_p2>GTTTTCCATCCAAAACTATCC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CTATTTTACGGTTTTGCATATTGGTTGGCTAGTTAGCGAAAACGAAACTATATGAATATGTGAAAAAACAAAAAAACATGGTAATTTGTTATGAAAATCCTTCTATCTCCTCTCGAACCGTCCGCCCTCCTCCCGTTCGAAAATTGATGTATCTCACTCTAGTGGTAATAGAGTAAAGCCAACAAGTTTTTTATAGATTTCGCGCCCAATCATTCGGGATAGTTTTGGATGGAAAAC</canonical_amplicon>
		<polymorphic_amplicon>CTATTTTACGGTTTTGCATATTGGTTGGCTAGTTAGCGAAAACGAAACTATATGAATATGTGAAAAAACAAAAAAAYATGGTAATTTGTTATGAAAATCCTTCTATCTCCTCTCGAACCGTCCGCCCTCCTCCCGTTCGAAAATTGATGTATCTCACTCTAGTGGTAATAGAGTAAAGCCAACAAGTTTTTTATAGATTTCGCGCCCAATCATTCGGGATAGTTTTGGATGGAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34660</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>385777</contig_pos>
        <strand>+</strand>
        <context>TGTTATGAAA[A/T]TCCTTCTATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTATATGAATATGTGAAAAAACAAAAAAACATGGTAATTTGTTATGAAA</left_flank>
        <right_flank>TCCTTCTATCTCCTCTCGAACCGTCCGCCCTCCTCCCGTTCGAAAATTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGGGCGAAATAAACGAATTCAGTTCATCAATTATCAATCAACAAAAAAACGAAAAAACTCAGTCTATCAGTTTAATCACTTGTTTGGGGGGTTTTTTTGATAAAAAATCGCGAAAAAAAGTGAGGAGAGTGATATAAATGATTCGGCGATCAGTGACGTCGTATACAACTTGACTGATCCACTCCCTTTCAAAAATTTACAAAATATAAAAATGAAAGAGAAAAGAAGAAGAAGACTGTACACAAATTTTTTTTGGAAATATGCCAAAATATTCTTTATGTCCCTGTCCTACGCCCCTTGTCATTGCCAATAGCGGCTTGTTTATCCGCTTCGGTGCGTTTATTTTGTCAACGAGATTAAAACAGCTTGTGTCCCGCCTGTCTCCCCTCTGGACGGTAAAAACTATTTTACGGTTTTGCATATTGGTTGGCTAGTTAGCGAAAACGAAACTATATGAATATGTGAAAAAACAAAAAAACATGGTAATTTGTTATGAAAATCCTTCTATCTCCTCTCGAACCGTCCGCCCTCCTCCCGTTCGAAAATTGATGTATCTCACTCTAGTGGTAATAGAGTAAAGCCAACAAGTTTTTTATAGATTTCGCGCCCAATCATTCGGGATAGTTTTGGATGGAAAACGAAGGATGAGGAGGGGGAGGACGAGGAACGGGTAATTTGGCGTTTCTTTTTTAAGGGTCTAGCTTTGGCTACTCACTGAAAAGGGAGAGAGGAGGTTTTTGGAACATTATCCAGTTGGATAACGACTAATTTTTTCGGAGAGGGGGGGGGGCGATCTAAACCAATCAGCTGATTTGATGGAAAATGAAAGGGGCGATGGAAGAAAAATGAATGAACGGAAACAAGGAAACAAGTATAGTTAGAAGAATTTTTGAGAAAATAGTGATAGGAAGAAATCAGAGTACCAGTATCGAAACATGATTTGGATGGTTTCGGAAAACTGGGTGGTCAGAAAATGTTTTTTTTAAGTTGGTCAGTTGG</canonical>
            <polymorphic>CCGGGCGAAATAAACGAATTCAGTTCATCAATTATCAATCAACAAAAAAACGAAAAAACTCAGTCTATCAGTTTAATCACTTGTTTGGGGGGTTTTTTTGATAAAAAATCGCGAAAAAAAGTGAGGAGAGTGATATAAATGATTCGGCGATCAGTGACGTCGTATACAACTTGACTGATCCACTCCCTTTCAAAAATTTACAAAATATAAAAATGAAAGAGAAAAGAAGAAGAAGACTGTACACAAATTTTTTTTGGAAATATGCCAAAATATTCTTTATGTCCCTGTCCTACGCCCCTTGTCATTGCCAATAGCGGCTTGTTTATCCGCTTCGGTGCGTTTATTTTGTCAACGAGATTAAAACAGCTTGTGTCCCGCCTGTCTCCCCTCTGGACGGTAAAAACTATTTTACGGTTTTGCATATTGGTTGGCTAGTTAGCGAAAACGAAACTATATGAATATGTGAAAAAACAAAAAAACATGGTAATTTGTTATGAAAWTCCTTCTATCTCCTCTCGAACCGTCCGCCCTCCTCCCGTTCGAAAATTGATGTATCTCACTCTAGTGGTAATAGAGTAAAGCCAACAAGTTTTTTATAGATTTCGCGCCCAATCATTCGGGATAGTTTTGGATGGAAAACGAAGGATGAGGAGGGGGAGGACGAGGAACGGGTAATTTGGCGTTTCTTTTTTAAGGGTCTAGCTTTGGCTACTCACTGAAAAGGGAGAGAGGAGGTTTTTGGAACATTATCCAGTTGGATAACGACTAATTTTTTCGGAGAGGGGGGGGGGCGATCTAAACCAATCAGCTGATTTGATGGAAAATGAAAGGGGCGATGGAAGAAAAATGAATGAACGGAAACAAGGAAACAAGTATAGTTAGAAGAATTTTTGAGAAAATAGTGATAGGAAGAAATCAGAGTACCAGTATCGAAACATGATTTGGATGGTTTCGGAAAACTGGGTGGTCAGAAAATGTTTTTTTTAAGTTGGTCAGTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTTTACGGTTTTGCATATTG</pcr_primer_p1>
		<pcr_primer_p2>GTTTTCCATCCAAAACTATCC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CTATTTTACGGTTTTGCATATTGGTTGGCTAGTTAGCGAAAACGAAACTATATGAATATGTGAAAAAACAAAAAAACATGGTAATTTGTTATGAAAATCCTTCTATCTCCTCTCGAACCGTCCGCCCTCCTCCCGTTCGAAAATTGATGTATCTCACTCTAGTGGTAATAGAGTAAAGCCAACAAGTTTTTTATAGATTTCGCGCCCAATCATTCGGGATAGTTTTGGATGGAAAAC</canonical_amplicon>
		<polymorphic_amplicon>CTATTTTACGGTTTTGCATATTGGTTGGCTAGTTAGCGAAAACGAAACTATATGAATATGTGAAAAAACAAAAAAACATGGTAATTTGTTATGAAAWTCCTTCTATCTCCTCTCGAACCGTCCGCCCTCCTCCCGTTCGAAAATTGATGTATCTCACTCTAGTGGTAATAGAGTAAAGCCAACAAGTTTTTTATAGATTTCGCGCCCAATCATTCGGGATAGTTTTGGATGGAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34661</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>385803</contig_pos>
        <strand>+</strand>
        <context>TCGAACCGTC[C/T]GCCCTCCTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAACATGGTAATTTGTTATGAAAATCCTTCTATCTCCTCTCGAACCGTC</left_flank>
        <right_flank>GCCCTCCTCCCGTTCGAAAATTGATGTATCTCACTCTAGTGGTAATAGAG</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAATTATCAATCAACAAAAAAACGAAAAAACTCAGTCTATCAGTTTAATCACTTGTTTGGGGGGTTTTTTTGATAAAAAATCGCGAAAAAAAGTGAGGAGAGTGATATAAATGATTCGGCGATCAGTGACGTCGTATACAACTTGACTGATCCACTCCCTTTCAAAAATTTACAAAATATAAAAATGAAAGAGAAAAGAAGAAGAAGACTGTACACAAATTTTTTTTGGAAATATGCCAAAATATTCTTTATGTCCCTGTCCTACGCCCCTTGTCATTGCCAATAGCGGCTTGTTTATCCGCTTCGGTGCGTTTATTTTGTCAACGAGATTAAAACAGCTTGTGTCCCGCCTGTCTCCCCTCTGGACGGTAAAAACTATTTTACGGTTTTGCATATTGGTTGGCTAGTTAGCGAAAACGAAACTATATGAATATGTGAAAAAACAAAAAAACATGGTAATTTGTTATGAAAATCCTTCTATCTCCTCTCGAACCGTCCGCCCTCCTCCCGTTCGAAAATTGATGTATCTCACTCTAGTGGTAATAGAGTAAAGCCAACAAGTTTTTTATAGATTTCGCGCCCAATCATTCGGGATAGTTTTGGATGGAAAACGAAGGATGAGGAGGGGGAGGACGAGGAACGGGTAATTTGGCGTTTCTTTTTTAAGGGTCTAGCTTTGGCTACTCACTGAAAAGGGAGAGAGGAGGTTTTTGGAACATTATCCAGTTGGATAACGACTAATTTTTTCGGAGAGGGGGGGGGGCGATCTAAACCAATCAGCTGATTTGATGGAAAATGAAAGGGGCGATGGAAGAAAAATGAATGAACGGAAACAAGGAAACAAGTATAGTTAGAAGAATTTTTGAGAAAATAGTGATAGGAAGAAATCAGAGTACCAGTATCGAAACATGATTTGGATGGTTTCGGAAAACTGGGTGGTCAGAAAATGTTTTTTTTAAGTTGGTCAGTTGGAAATTTGATTCATAACAAGTTCTTGT</canonical>
            <polymorphic>ATCAATTATCAATCAACAAAAAAACGAAAAAACTCAGTCTATCAGTTTAATCACTTGTTTGGGGGGTTTTTTTGATAAAAAATCGCGAAAAAAAGTGAGGAGAGTGATATAAATGATTCGGCGATCAGTGACGTCGTATACAACTTGACTGATCCACTCCCTTTCAAAAATTTACAAAATATAAAAATGAAAGAGAAAAGAAGAAGAAGACTGTACACAAATTTTTTTTGGAAATATGCCAAAATATTCTTTATGTCCCTGTCCTACGCCCCTTGTCATTGCCAATAGCGGCTTGTTTATCCGCTTCGGTGCGTTTATTTTGTCAACGAGATTAAAACAGCTTGTGTCCCGCCTGTCTCCCCTCTGGACGGTAAAAACTATTTTACGGTTTTGCATATTGGTTGGCTAGTTAGCGAAAACGAAACTATATGAATATGTGAAAAAACAAAAAAACATGGTAATTTGTTATGAAAATCCTTCTATCTCCTCTCGAACCGTCYGCCCTCCTCCCGTTCGAAAATTGATGTATCTCACTCTAGTGGTAATAGAGTAAAGCCAACAAGTTTTTTATAGATTTCGCGCCCAATCATTCGGGATAGTTTTGGATGGAAAACGAAGGATGAGGAGGGGGAGGACGAGGAACGGGTAATTTGGCGTTTCTTTTTTAAGGGTCTAGCTTTGGCTACTCACTGAAAAGGGAGAGAGGAGGTTTTTGGAACATTATCCAGTTGGATAACGACTAATTTTTTCGGAGAGGGGGGGGGGCGATCTAAACCAATCAGCTGATTTGATGGAAAATGAAAGGGGCGATGGAAGAAAAATGAATGAACGGAAACAAGGAAACAAGTATAGTTAGAAGAATTTTTGAGAAAATAGTGATAGGAAGAAATCAGAGTACCAGTATCGAAACATGATTTGGATGGTTTCGGAAAACTGGGTGGTCAGAAAATGTTTTTTTTAAGTTGGTCAGTTGGAAATTTGATTCATAACAAGTTCTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 301 150 48</canonical_bands>
                <polymorphic_bands>651 301 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTTTACGGTTTTGCATATTG</pcr_primer_p1>
		<pcr_primer_p2>GTTTTCCATCCAAAACTATCC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CTATTTTACGGTTTTGCATATTGGTTGGCTAGTTAGCGAAAACGAAACTATATGAATATGTGAAAAAACAAAAAAACATGGTAATTTGTTATGAAAATCCTTCTATCTCCTCTCGAACCGTCCGCCCTCCTCCCGTTCGAAAATTGATGTATCTCACTCTAGTGGTAATAGAGTAAAGCCAACAAGTTTTTTATAGATTTCGCGCCCAATCATTCGGGATAGTTTTGGATGGAAAAC</canonical_amplicon>
		<polymorphic_amplicon>CTATTTTACGGTTTTGCATATTGGTTGGCTAGTTAGCGAAAACGAAACTATATGAATATGTGAAAAAACAAAAAAACATGGTAATTTGTTATGAAAATCCTTCTATCTCCTCTCGAACCGTCYGCCCTCCTCCCGTTCGAAAATTGATGTATCTCACTCTAGTGGTAATAGAGTAAAGCCAACAAGTTTTTTATAGATTTCGCGCCCAATCATTCGGGATAGTTTTGGATGGAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34662</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>385999</contig_pos>
        <strand>+</strand>
        <context>CTCACTGAAR[A/G]GGGAGAGAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAATTTGGCGTTTCTTTTTTAAGGGTCTAGCTTTGGCTACTCACTGAAA</left_flank>
        <right_flank>GGGAGAGAGGAGGTTTTTGGAACATTATCCAGTTGGATAACGACTAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGAAGAAGAAGACTGTACACAAATTTTTTTTGGAAATATGCCAAAATATTCTTTATGTCCCTGTCCTACGCCCCTTGTCATTGCCAATAGCGGCTTGTTTATCCGCTTCGGTGCGTTTATTTTGTCAACGAGATTAAAACAGCTTGTGTCCCGCCTGTCTCCCCTCTGGACGGTAAAAACTATTTTACGGTTTTGCATATTGGTTGGCTAGTTAGCGAAAACGAAACTATATGAATATGTGAAAAAACAAAAAAACATGGTAATTTGTTATGAAAATCCTTCTATCTCCTCTCGAACCGTCCGCCCTCCTCCCGTTCGAAAATTGATGTATCTCACTCTAGTGGTAATAGAGTAAAGCCAACAAGTTTTTTATAGATTTCGCGCCCAATCATTCGGGATAGTTTTGGATGGAAAACGAAGGATGAGGAGGGGGAGGACGAGGAACGGGTAATTTGGCGTTTCTTTTTTAAGGGTCTAGCTTTGGCTACTCACTGAAAAGGGAGAGAGGAGGTTTTTGGAACATTATCCAGTTGGATAACGACTAATTTTTTCGGAGAGGGGGGGGGGCGATCTAAACCAATCAGCTGATTTGATGGAAAATGAAAGGGGCGATGGAAGAAAAATGAATGAACGGAAACAAGGAAACAAGTATAGTTAGAAGAATTTTTGAGAAAATAGTGATAGGAAGAAATCAGAGTACCAGTATCGAAACATGATTTGGATGGTTTCGGAAAACTGGGTGGTCAGAAAATGTTTTTTTTAAGTTGGTCAGTTGGAAATTTGATTCATAACAAGTTCTTGTACAAAGTTTGGCTCCTGTTTTCTAGAGAAAATGAAATTTGGGTTGTGTTTCCTAGGATTTCAAGGATTTTGGAATGACTTCAAATTGTAGGCACGAAAAAAACCTAAACGGAAAGTGAATTTCCAGATCTCTGAAAATGTATGGCTGGAAGAAAATGTATTCGTGGATCCTTGAGAATTTTCACACCTAGGCATAC</canonical>
            <polymorphic>AAAGAAGAAGAAGACTGTACACAAATTTTTTTTGGAAATATGCCAAAATATTCTTTATGTCCCTGTCCTACGCCCCTTGTCATTGCCAATAGCGGCTTGTTTATCCGCTTCGGTGCGTTTATTTTGTCAACGAGATTAAAACAGCTTGTGTCCCGCCTGTCTCCCCTCTGGACGGTAAAAACTATTTTACGGTTTTGCATATTGGTTGGCTAGTTAGCGAAAACGAAACTATATGAATATGTGAAAAAACAAAAAAACATGGTAATTTGTTATGAAAATCCTTCTATCTCCTCTCGAACCGTCCGCCCTCCTCCCGTTCGAAAATTGATGTATCTCACTCTAGTGGTAATAGAGTAAAGCCAACAAGTTTTTTATAGATTTCGCGCCCAATCATTCGGGATAGTTTTGGATGGAAAACGAAGGATGAGGAGGGGGAGGACGAGGAACGGGTAATTTGGCGTTTCTTTTTTAAGGGTCTAGCTTTGGCTACTCACTGAAARGGGAGAGAGGAGGTTTTTGGAACATTATCCAGTTGGATAACGACTAATTTTTTCGGAGAGGGGGGGGGGCGATCTAAACCAATCAGCTGATTTGATGGAAAATGAAAGGGGCGATGGAAGAAAAATGAATGAACGGAAACAAGGAAACAAGTATAGTTAGAAGAATTTTTGAGAAAATAGTGATAGGAAGAAATCAGAGTACCAGTATCGAAACATGATTTGGATGGTTTCGGAAAACTGGGTGGTCAGAAAATGTTTTTTTTAAGTTGGTCAGTTGGAAATTTGATTCATAACAAGTTCTTGTACAAAGTTTGGCTCCTGTTTTCTAGAGAAAATGAAATTTGGGTTGTGTTTCCTAGGATTTCAAGGATTTTGGAATGACTTCAAATTGTAGGCACGAAAAAAACCTAAACGGAAAGTGAATTTCCAGATCTCTGAAAATGTATGGCTGGAAGAAAATGTATTCGTGGATCCTTGAGAATTTTCACACCTAGGCATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTAATTTGGCGTTTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCTGATTTCTTCCTATCACTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTAATTTGGCGTTTCTTTTTTAAGGGTCTAGCTTTGGCTACTCACTGAAAAGGGAGAGAGGAGGTTTTTGGAACATTATCCAGTTGGATAACGACTAATTTTTTCGGAGAGGGGGGGGGGCGATCTAAACCAATCAGCTGATTTGATGGAAAATGAAAGGGGCGATGGAAGAAAAATGAATGAACGGAAACAAGGAAACAAGTATAGTTAGAAGAATTTTTGAGAAAATAGTGATAGGAAGAAATCAGA</canonical_amplicon>
		<polymorphic_amplicon>GGTAATTTGGCGTTTCTTTTTTAAGGGTCTAGCTTTGGCTACTCACTGAAARGGGAGAGAGGAGGTTTTTGGAACATTATCCAGTTGGATAACGACTAATTTTTTCGGAGAGGGGGGGGGGCGATCTAAACCAATCAGCTGATTTGATGGAAAATGAAAGGGGCGATGGAAGAAAAATGAATGAACGGAAACAAGGAAACAAGTATAGTTAGAAGAATTTTTGAGAAAATAGTGATAGGAAGAAATCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34663</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>408145</contig_pos>
        <strand>+</strand>
        <context>AGCTTAGGGT[A/T]ATATGTGCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TACTTTGAGGCATGCGTAGACATTGGGGCAACGACAGGAGAGCTTAGGGT</left_flank>
        <right_flank>ATATGTGCATTTTCCAGTTAAAATATTTATATTTTTGACAGGGACCGTGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACAACAAAAAAGTTTAAGCGACAAAAACGATAACGAAACAATTTTTTGTCGCATTTTGATTTTTTTGTTTCTCCTGCCTCGAAAATTTCAAGAGCTTTTCGGAAATCAGTCTCTTAACAATTTGAAGCACTTTTTTGCAAATAGATAGTTGAAGCGAAAAAAAACGGGTGGGGGGGGGGGAATTGAAAGACAAAAAGAGAAAAAGAGAAACAAAGAAAACTTAACGGTAGGGGGGGGGGCACAAAAAAGCGAGGATGGGATAAATGAAGGAGGAGCAATTTACCGAGAAGTTTTCAAGAGTTTCGAGAAGTGGCTCGTTGATTCGGGAAGGAGTGAATTGAGGGGAGTAAATGGGATTTTTGGGATGGTGCCAAACAGGAAAAGCAACGTGTTTTCTATCGAGGTGATCAGATGGTCATTGTGACGTATGTTTCCGAATACTATGATTACTTTGAGGCATGCGTAGACATTGGGGCAACGACAGGAGAGCTTAGGGTTATATGTGCATTTTCCAGTTAAAATATTTATATTTTTGACAGGGACCGTGAAAAAATTGGCTCAAACTTCTATTATAGGTTTATGGTATTCTAATCACAGTAACCGAAAAATTCATATAATGATTTTCTTTTTCAATAGGTGATAACCAACTTCGGAGTCCAAAATAAGCAGTCCAGATTTTTTTTTCGATTTGACTGAAAGTTTCAAAATCTTATTATTCATTTTGCAATTTTCGGCTCTTTTTTTGTTACTAACTGTGTAATTATTCAGAAAGGAATTTGACGAAATTATTTGCCAATTACAAAACTTAAGTTTTTATTTCTCAGTTATTCAGAAATTTGTAAACAAATCTAATATTTCTGTTCAATTTTTTCAGGAATTCAAATTTGAATTTTTCCACTGAAAAGGTGAAAATATAATGTTTTTCAAATTGTTTCACAGCTTCGAATAAGATCTGCGTATTGCCAAAAGGTAAAATTTATTGTCCGGTACTCTAGGAA</canonical>
            <polymorphic>CAACAACAAAAAAGTTTAAGCGACAAAAACGATAACGAAACAATTTTTTGTCGCATTTTGATTTTTTTGTTTCTCCTGCCTCGAAAATTTCAAGAGCTTTTCGGAAATCAGTCTCTTAACAATTTGAAGCACTTTTTTGCAAATAGATAGTTGAAGCGAAAAAAAACGGGTGGGGGGGGGGGAATTGAAAGACAAAAAGAGAAAAAGAGAAACAAAGAAAACTTAACGGTAGGGGGGGGGGCACAAAAAAGCGAGGATGGGATAAATGAAGGAGGAGCAATTTACCGAGAAGTTTTCAAGAGTTTCGAGAAGTGGCTCGTTGATTCGGGAAGGAGTGAATTGAGGGGAGTAAATGGGATTTTTGGGATGGTGCCAAACAGGAAAAGCAACGTGTTTTCTATCGAGGTGATCAGATGGTCATTGTGACGTATGTTTCCGAATACTATGATTACTTTGAGGCATGCGTAGACATTGGGGCAACGACAGGAGAGCTTAGGGTWATATGTGCATTTTCCAGTTAAAATATTTATATTTTTGACAGGGACCGTGAAAAAATTGGCTCAAACTTCTATTATAGGTTTATGGTATTCTAATCACAGTAACCGAAAAATTCATATAATGATTTTCTTTTTCAATAGGTGATAACCAACTTCGGAGTCCAAAATAAGCAGTCCAGATTTTTTTTTCGATTTGACTGAAAGTTTCAAAATCTTATTATTCATTTTGCAATTTTCGGCTCTTTTTTTGTTACTAACTGTGTAATTATTCAGAAAGGAATTTGACGAAATTATTTGCCAATTACAAAACTTAAGTTTTTATTTCTCAGTTATTCAGAAATTTGTAAACAAATCTAATATTTCTGTTCAATTTTTTCAGGAATTCAAATTTGAATTTTTCCACTGAAAAGGTGAAAATATAATGTTTTTCAAATTGTTTCACAGCTTCGAATAAGATCTGCGTATTGCCAAAAGGTAAAATTTATTGTCCGGTACTCTAGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCGAATACTATGATTACTTTGA</pcr_primer_p1>
		<pcr_primer_p2>AAAATCTGGACTGCTTATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTCCGAATACTATGATTACTTTGAGGCATGCGTAGACATTGGGGCAACGACAGGAGAGCTTAGGGTTATATGTGCATTTTCCAGTTAAAATATTTATATTTTTGACAGGGACCGTGAAAAAATTGGCTCAAACTTCTATTATAGGTTTATGGTATTCTAATCACAGTAACCGAAAAATTCATATAATGATTTTCTTTTTCAATAGGTGATAACCAACTTCGGAGTCCAAAATAAGCAGTCCAGATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTCCGAATACTATGATTACTTTGAGGCATGCGTAGACATTGGGGCAACGACAGGAGAGCTTAGGGTWATATGTGCATTTTCCAGTTAAAATATTTATATTTTTGACAGGGACCGTGAAAAAATTGGCTCAAACTTCTATTATAGGTTTATGGTATTCTAATCACAGTAACCGAAAAATTCATATAATGATTTTCTTTTTCAATAGGTGATAACCAACTTCGGAGTCCAAAATAAGCAGTCCAGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34664</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>408228</contig_pos>
        <strand>+</strand>
        <context>TATAGGTTTA[C/T]GGTATTCTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGACAGGGACCGTGAAAAAATTGGCTCAAACTTCTATTATAGGTTTA</left_flank>
        <right_flank>GGTATTCTAATCACAGTAACCGAAAAATTCATATAATGATTTTCTTTTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTTCAAGAGCTTTTCGGAAATCAGTCTCTTAACAATTTGAAGCACTTTTTTGCAAATAGATAGTTGAAGCGAAAAAAAACGGGTGGGGGGGGGGGAATTGAAAGACAAAAAGAGAAAAAGAGAAACAAAGAAAACTTAACGGTAGGGGGGGGGGCACAAAAAAGCGAGGATGGGATAAATGAAGGAGGAGCAATTTACCGAGAAGTTTTCAAGAGTTTCGAGAAGTGGCTCGTTGATTCGGGAAGGAGTGAATTGAGGGGAGTAAATGGGATTTTTGGGATGGTGCCAAACAGGAAAAGCAACGTGTTTTCTATCGAGGTGATCAGATGGTCATTGTGACGTATGTTTCCGAATACTATGATTACTTTGAGGCATGCGTAGACATTGGGGCAACGACAGGAGAGCTTAGGGTTATATGTGCATTTTCCAGTTAAAATATTTATATTTTTGACAGGGACCGTGAAAAAATTGGCTCAAACTTCTATTATAGGTTTATGGTATTCTAATCACAGTAACCGAAAAATTCATATAATGATTTTCTTTTTCAATAGGTGATAACCAACTTCGGAGTCCAAAATAAGCAGTCCAGATTTTTTTTTCGATTTGACTGAAAGTTTCAAAATCTTATTATTCATTTTGCAATTTTCGGCTCTTTTTTTGTTACTAACTGTGTAATTATTCAGAAAGGAATTTGACGAAATTATTTGCCAATTACAAAACTTAAGTTTTTATTTCTCAGTTATTCAGAAATTTGTAAACAAATCTAATATTTCTGTTCAATTTTTTCAGGAATTCAAATTTGAATTTTTCCACTGAAAAGGTGAAAATATAATGTTTTTCAAATTGTTTCACAGCTTCGAATAAGATCTGCGTATTGCCAAAAGGTAAAATTTATTGTCCGGTACTCTAGGAAATTTCAACATTCCCGTTCATTGTACAAGTTTGCAACGGACTGTTATAGTTAGGAAATTTTTTTTCTAATTTTATCTTCAAATT</canonical>
            <polymorphic>AAAATTTCAAGAGCTTTTCGGAAATCAGTCTCTTAACAATTTGAAGCACTTTTTTGCAAATAGATAGTTGAAGCGAAAAAAAACGGGTGGGGGGGGGGGAATTGAAAGACAAAAAGAGAAAAAGAGAAACAAAGAAAACTTAACGGTAGGGGGGGGGGCACAAAAAAGCGAGGATGGGATAAATGAAGGAGGAGCAATTTACCGAGAAGTTTTCAAGAGTTTCGAGAAGTGGCTCGTTGATTCGGGAAGGAGTGAATTGAGGGGAGTAAATGGGATTTTTGGGATGGTGCCAAACAGGAAAAGCAACGTGTTTTCTATCGAGGTGATCAGATGGTCATTGTGACGTATGTTTCCGAATACTATGATTACTTTGAGGCATGCGTAGACATTGGGGCAACGACAGGAGAGCTTAGGGTTATATGTGCATTTTCCAGTTAAAATATTTATATTTTTGACAGGGACCGTGAAAAAATTGGCTCAAACTTCTATTATAGGTTTAYGGTATTCTAATCACAGTAACCGAAAAATTCATATAATGATTTTCTTTTTCAATAGGTGATAACCAACTTCGGAGTCCAAAATAAGCAGTCCAGATTTTTTTTTCGATTTGACTGAAAGTTTCAAAATCTTATTATTCATTTTGCAATTTTCGGCTCTTTTTTTGTTACTAACTGTGTAATTATTCAGAAAGGAATTTGACGAAATTATTTGCCAATTACAAAACTTAAGTTTTTATTTCTCAGTTATTCAGAAATTTGTAAACAAATCTAATATTTCTGTTCAATTTTTTCAGGAATTCAAATTTGAATTTTTCCACTGAAAAGGTGAAAATATAATGTTTTTCAAATTGTTTCACAGCTTCGAATAAGATCTGCGTATTGCCAAAAGGTAAAATTTATTGTCCGGTACTCTAGGAAATTTCAACATTCCCGTTCATTGTACAAGTTTGCAACGGACTGTTATAGTTAGGAAATTTTTTTTCTAATTTTATCTTCAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCGAATACTATGATTACTTTGA</pcr_primer_p1>
		<pcr_primer_p2>AAAATCTGGACTGCTTATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTCCGAATACTATGATTACTTTGAGGCATGCGTAGACATTGGGGCAACGACAGGAGAGCTTAGGGTTATATGTGCATTTTCCAGTTAAAATATTTATATTTTTGACAGGGACCGTGAAAAAATTGGCTCAAACTTCTATTATAGGTTTATGGTATTCTAATCACAGTAACCGAAAAATTCATATAATGATTTTCTTTTTCAATAGGTGATAACCAACTTCGGAGTCCAAAATAAGCAGTCCAGATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTCCGAATACTATGATTACTTTGAGGCATGCGTAGACATTGGGGCAACGACAGGAGAGCTTAGGGTTATATGTGCATTTTCCAGTTAAAATATTTATATTTTTGACAGGGACCGTGAAAAAATTGGCTCAAACTTCTATTATAGGTTTAYGGTATTCTAATCACAGTAACCGAAAAATTCATATAATGATTTTCTTTTTCAATAGGTGATAACCAACTTCGGAGTCCAAAATAAGCAGTCCAGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34665</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>408249</contig_pos>
        <strand>+</strand>
        <context>TCACAGTAAC[C/G]GAAAAATTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATTGGCTCAAACTTCTATTATAGGTTTATGGTATTCTAATCACAGTAAC</left_flank>
        <right_flank>GAAAAATTCATATAATGATTTTCTTTTTCAATAGGTGATAACCAACTTCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCAGTCTCTTAACAATTTGAAGCACTTTTTTGCAAATAGATAGTTGAAGCGAAAAAAAACGGGTGGGGGGGGGGGAATTGAAAGACAAAAAGAGAAAAAGAGAAACAAAGAAAACTTAACGGTAGGGGGGGGGGCACAAAAAAGCGAGGATGGGATAAATGAAGGAGGAGCAATTTACCGAGAAGTTTTCAAGAGTTTCGAGAAGTGGCTCGTTGATTCGGGAAGGAGTGAATTGAGGGGAGTAAATGGGATTTTTGGGATGGTGCCAAACAGGAAAAGCAACGTGTTTTCTATCGAGGTGATCAGATGGTCATTGTGACGTATGTTTCCGAATACTATGATTACTTTGAGGCATGCGTAGACATTGGGGCAACGACAGGAGAGCTTAGGGTTATATGTGCATTTTCCAGTTAAAATATTTATATTTTTGACAGGGACCGTGAAAAAATTGGCTCAAACTTCTATTATAGGTTTATGGTATTCTAATCACAGTAACCGAAAAATTCATATAATGATTTTCTTTTTCAATAGGTGATAACCAACTTCGGAGTCCAAAATAAGCAGTCCAGATTTTTTTTTCGATTTGACTGAAAGTTTCAAAATCTTATTATTCATTTTGCAATTTTCGGCTCTTTTTTTGTTACTAACTGTGTAATTATTCAGAAAGGAATTTGACGAAATTATTTGCCAATTACAAAACTTAAGTTTTTATTTCTCAGTTATTCAGAAATTTGTAAACAAATCTAATATTTCTGTTCAATTTTTTCAGGAATTCAAATTTGAATTTTTCCACTGAAAAGGTGAAAATATAATGTTTTTCAAATTGTTTCACAGCTTCGAATAAGATCTGCGTATTGCCAAAAGGTAAAATTTATTGTCCGGTACTCTAGGAAATTTCAACATTCCCGTTCATTGTACAAGTTTGCAACGGACTGTTATAGTTAGGAAATTTTTTTTCTAATTTTATCTTCAAATTCACAAGCTATGTTCAAAAATC</canonical>
            <polymorphic>AAATCAGTCTCTTAACAATTTGAAGCACTTTTTTGCAAATAGATAGTTGAAGCGAAAAAAAACGGGTGGGGGGGGGGGAATTGAAAGACAAAAAGAGAAAAAGAGAAACAAAGAAAACTTAACGGTAGGGGGGGGGGCACAAAAAAGCGAGGATGGGATAAATGAAGGAGGAGCAATTTACCGAGAAGTTTTCAAGAGTTTCGAGAAGTGGCTCGTTGATTCGGGAAGGAGTGAATTGAGGGGAGTAAATGGGATTTTTGGGATGGTGCCAAACAGGAAAAGCAACGTGTTTTCTATCGAGGTGATCAGATGGTCATTGTGACGTATGTTTCCGAATACTATGATTACTTTGAGGCATGCGTAGACATTGGGGCAACGACAGGAGAGCTTAGGGTTATATGTGCATTTTCCAGTTAAAATATTTATATTTTTGACAGGGACCGTGAAAAAATTGGCTCAAACTTCTATTATAGGTTTATGGTATTCTAATCACAGTAACSGAAAAATTCATATAATGATTTTCTTTTTCAATAGGTGATAACCAACTTCGGAGTCCAAAATAAGCAGTCCAGATTTTTTTTTCGATTTGACTGAAAGTTTCAAAATCTTATTATTCATTTTGCAATTTTCGGCTCTTTTTTTGTTACTAACTGTGTAATTATTCAGAAAGGAATTTGACGAAATTATTTGCCAATTACAAAACTTAAGTTTTTATTTCTCAGTTATTCAGAAATTTGTAAACAAATCTAATATTTCTGTTCAATTTTTTCAGGAATTCAAATTTGAATTTTTCCACTGAAAAGGTGAAAATATAATGTTTTTCAAATTGTTTCACAGCTTCGAATAAGATCTGCGTATTGCCAAAAGGTAAAATTTATTGTCCGGTACTCTAGGAAATTTCAACATTCCCGTTCATTGTACAAGTTTGCAACGGACTGTTATAGTTAGGAAATTTTTTTTCTAATTTTATCTTCAAATTCACAAGCTATGTTCAAAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTGGCTCAAACTTCTATT</pcr_primer_p1>
		<pcr_primer_p2>ATAATTTCGTCAAATTCCTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTGGCTCAAACTTCTATTATAGGTTTATGGTATTCTAATCACAGTAACCGAAAAATTCATATAATGATTTTCTTTTTCAATAGGTGATAACCAACTTCGGAGTCCAAAATAAGCAGTCCAGATTTTTTTTTCGATTTGACTGAAAGTTTCAAAATCTTATTATTCATTTTGCAATTTTCGGCTCTTTTTTTGTTACTAACTGTGTAATTATTCAGAAAGGAATTTGACGAAATTAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTGGCTCAAACTTCTATTATAGGTTTATGGTATTCTAATCACAGTAACSGAAAAATTCATATAATGATTTTCTTTTTCAATAGGTGATAACCAACTTCGGAGTCCAAAATAAGCAGTCCAGATTTTTTTTTCGATTTGACTGAAAGTTTCAAAATCTTATTATTCATTTTGCAATTTTCGGCTCTTTTTTTGTTACTAACTGTGTAATTATTCAGAAAGGAATTTGACGAAATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34666</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>408489</contig_pos>
        <strand>+</strand>
        <context>GAAATTTGTA[A/G]ACAAATCTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCAATTACAAAACTTAAGTTTTTATTTCTCAGTTATTCAGAAATTTGTA</left_flank>
        <right_flank>ACAAATCTAATATTTCTGTTCAATTTTTTCAGGAATTCAAATTTGAATTT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGAGTAAATGGGATTTTTGGGATGGTGCCAAACAGGAAAAGCAACGTGTTTTCTATCGAGGTGATCAGATGGTCATTGTGACGTATGTTTCCGAATACTATGATTACTTTGAGGCATGCGTAGACATTGGGGCAACGACAGGAGAGCTTAGGGTTATATGTGCATTTTCCAGTTAAAATATTTATATTTTTGACAGGGACCGTGAAAAAATTGGCTCAAACTTCTATTATAGGTTTATGGTATTCTAATCACAGTAACCGAAAAATTCATATAATGATTTTCTTTTTCAATAGGTGATAACCAACTTCGGAGTCCAAAATAAGCAGTCCAGATTTTTTTTTCGATTTGACTGAAAGTTTCAAAATCTTATTATTCATTTTGCAATTTTCGGCTCTTTTTTTGTTACTAACTGTGTAATTATTCAGAAAGGAATTTGACGAAATTATTTGCCAATTACAAAACTTAAGTTTTTATTTCTCAGTTATTCAGAAATTTGTAAACAAATCTAATATTTCTGTTCAATTTTTTCAGGAATTCAAATTTGAATTTTTCCACTGAAAAGGTGAAAATATAATGTTTTTCAAATTGTTTCACAGCTTCGAATAAGATCTGCGTATTGCCAAAAGGTAAAATTTATTGTCCGGTACTCTAGGAAATTTCAACATTCCCGTTCATTGTACAAGTTTGCAACGGACTGTTATAGTTAGGAAATTTTTTTTCTAATTTTATCTTCAAATTCACAAGCTATGTTCAAAAATCCTCGTCTAGACATCTAAAATTACCTCCCACAACTTCTCAAAGATATTTTCCACAAATTCCATTTGATTAGGTAAAGTGAGTATTTTCTTATCCCCGAATTTATCCCTAATGTACCTCCTTCTCAAAAAATCCCGACTTTTTGCAGTAATACAAAATAGGATGAACTTTTATCGATGACACGGAAATCCAGTGATTTTTGAAAATCCAGTAAAACTCGGAGGATGTTCGGTGCCATTTTCT</canonical>
            <polymorphic>GGGAGTAAATGGGATTTTTGGGATGGTGCCAAACAGGAAAAGCAACGTGTTTTCTATCGAGGTGATCAGATGGTCATTGTGACGTATGTTTCCGAATACTATGATTACTTTGAGGCATGCGTAGACATTGGGGCAACGACAGGAGAGCTTAGGGTTATATGTGCATTTTCCAGTTAAAATATTTATATTTTTGACAGGGACCGTGAAAAAATTGGCTCAAACTTCTATTATAGGTTTATGGTATTCTAATCACAGTAACCGAAAAATTCATATAATGATTTTCTTTTTCAATAGGTGATAACCAACTTCGGAGTCCAAAATAAGCAGTCCAGATTTTTTTTTCGATTTGACTGAAAGTTTCAAAATCTTATTATTCATTTTGCAATTTTCGGCTCTTTTTTTGTTACTAACTGTGTAATTATTCAGAAAGGAATTTGACGAAATTATTTGCCAATTACAAAACTTAAGTTTTTATTTCTCAGTTATTCAGAAATTTGTARACAAATCTAATATTTCTGTTCAATTTTTTCAGGAATTCAAATTTGAATTTTTCCACTGAAAAGGTGAAAATATAATGTTTTTCAAATTGTTTCACAGCTTCGAATAAGATCTGCGTATTGCCAAAAGGTAAAATTTATTGTCCGGTACTCTAGGAAATTTCAACATTCCCGTTCATTGTACAAGTTTGCAACGGACTGTTATAGTTAGGAAATTTTTTTTCTAATTTTATCTTCAAATTCACAAGCTATGTTCAAAAATCCTCGTCTAGACATCTAAAATTACCTCCCACAACTTCTCAAAGATATTTTCCACAAATTCCATTTGATTAGGTAAAGTGAGTATTTTCTTATCCCCGAATTTATCCCTAATGTACCTCCTTCTCAAAAAATCCCGACTTTTTGCAGTAATACAAAATAGGATGAACTTTTATCGATGACACGGAAATCCAGTGATTTTTGAAAATCCAGTAAAACTCGGAGGATGTTCGGTGCCATTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAGGAATTTGACGAAATTAT</pcr_primer_p1>
		<pcr_primer_p2>GGAATGTTGAAATTTCCTAGAGTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGAAAGGAATTTGACGAAATTATTTGCCAATTACAAAACTTAAGTTTTTATTTCTCAGTTATTCAGAAATTTGTAAACAAATCTAATATTTCTGTTCAATTTTTTCAGGAATTCAAATTTGAATTTTTCCACTGAAAAGGTGAAAATATAATGTTTTTCAAATTGTTTCACAGCTTCGAATAAGATCTGCGTATTGCCAAAAGGTAAAATTTATTGTCCGGTACTCTAGGAAATTTCAACATTCC</canonical_amplicon>
		<polymorphic_amplicon>AGAAAGGAATTTGACGAAATTATTTGCCAATTACAAAACTTAAGTTTTTATTTCTCAGTTATTCAGAAATTTGTARACAAATCTAATATTTCTGTTCAATTTTTTCAGGAATTCAAATTTGAATTTTTCCACTGAAAAGGTGAAAATATAATGTTTTTCAAATTGTTTCACAGCTTCGAATAAGATCTGCGTATTGCCAAAAGGTAAAATTTATTGTCCGGTACTCTAGGAAATTTCAACATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34667</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>446840</contig_pos>
        <strand>+</strand>
        <context>TGCCTTTCTG[C/T]TTGTTGTTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCACCAATGATGTAAATGATTCCATTTCGTCGTGAAATCATGCCTTTCTG</left_flank>
        <right_flank>TTGTTGTTGATGAGCAACTTTCCACTAAGCAAACGCAAAAGTATCGGCAC</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCGGCGAACGAACTATTCTCGTATCGAAAGAAAACGACTCTTCTTTCAAAATCAGATGATTTCGATGTCGAGTGTGCAGTCAAGTTCAGTCGACATAACTCCTTATTTTTGTCGATTATAGTTTCAATTTTCTTGCTAATTCTGTGAGAACTCTTTCCCATTCCTTCTCTATCACGGGTTTCTAACAAATTTCGAATTTCCTGATTTTGTCTACGGTTAATGAATCTTTCCCATTTTCCTGGTAAACTTACTTCTGGAATACTTTGATGTGAACATTTGTGAGGAACAATAATTTGGAGCATTTCTTCTCGATATCCTCAAACGTTTCTCCTTGGCCTGAAACAGACAATTCAATTTTCCACATCCAAACAGCGATTTCTCACCAAAAACTTTGTAGACTTGCTTGAAAAATAGCTGAAGGAAGAACGTCAGCTCGTCGCTACGGCATCCACCAATGATGTAAATGATTCCATTTCGTCGTGAAATCATGCCTTTCTGCTTGTTGTTGATGAGCAACTTTCCACTAAGCAAACGCAAAAGTATCGGCACAACGACTGATCGATGCTCGTCGGCTACCTGAACGTCACCTTCGTCATTGGACAGTTTAAACGACGGAAGGGTTTGTCTGAGTGTTTTCTCGTCAATCAAAGCTGCCAAATTCTCGCGATATTTGGCAAGAATCGTGTTTCTGTACGAGAAGATACAAGAGAGCGCAGCTTTTTGAATACTCTCATAACGTGATCCAAGAAGTTGTTCATACATTTGCAGAATTTGCGGCTCCATATAAACAGACTTTGCAGCATGGAACTTGGCGTAAACGCTCAGAAGAGCCGTCAACGTTTTCAGAACAACCGTTGTTTCTTGCTTTTGGTTCGAAAGGGCTTCTTCTGATTCTTCTGGTTGTTCGTCGTCATCTTCCTTTTCACCTTCCTCGCCTTTCGGAATAAAAAAAGTTGGAACCACAGAAGCCGTCAAACGCATATATTCTTCGTAGATATT</canonical>
            <polymorphic>AGCGGCGAACGAACTATTCTCGTATCGAAAGAAAACGACTCTTCTTTCAAAATCAGATGATTTCGATGTCGAGTGTGCAGTCAAGTTCAGTCGACATAACTCCTTATTTTTGTCGATTATAGTTTCAATTTTCTTGCTAATTCTGTGAGAACTCTTTCCCATTCCTTCTCTATCACGGGTTTCTAACAAATTTCGAATTTCCTGATTTTGTCTACGGTTAATGAATCTTTCCCATTTTCCTGGTAAACTTACTTCTGGAATACTTTGATGTGAACATTTGTGAGGAACAATAATTTGGAGCATTTCTTCTCGATATCCTCAAACGTTTCTCCTTGGCCTGAAACAGACAATTCAATTTTCCACATCCAAACAGCGATTTCTCACCAAAAACTTTGTAGACTTGCTTGAAAAATAGCTGAAGGAAGAACGTCAGCTCGTCGCTACGGCATCCACCAATGATGTAAATGATTCCATTTCGTCGTGAAATCATGCCTTTCTGYTTGTTGTTGATGAGCAACTTTCCACTAAGCAAACGCAAAAGTATCGGCACAACGACTGATCGATGCTCGTCGGCTACCTGAACGTCACCTTCGTCATTGGACAGTTTAAACGACGGAAGGGTTTGTCTGAGTGTTTTCTCGTCAATCAAAGCTGCCAAATTCTCGCGATATTTGGCAAGAATCGTGTTTCTGTACGAGAAGATACAAGAGAGCGCAGCTTTTTGAATACTCTCATAACGTGATCCAAGAAGTTGTTCATACATTTGCAGAATTTGCGGCTCCATATAAACAGACTTTGCAGCATGGAACTTGGCGTAAACGCTCAGAAGAGCCGTCAACGTTTTCAGAACAACCGTTGTTTCTTGCTTTTGGTTCGAAAGGGCTTCTTCTGATTCTTCTGGTTGTTCGTCGTCATCTTCCTTTTCACCTTCCTCGCCTTTCGGAATAAAAAAAGTTGGAACCACAGAAGCCGTCAAACGCATATATTCTTCGTAGATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAGACTTGCTTGAAAAATAGC</pcr_primer_p1>
		<pcr_primer_p2>ACGAGAAAACACTCAGACAAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTAGACTTGCTTGAAAAATAGCTGAAGGAAGAACGTCAGCTCGTCGCTACGGCATCCACCAATGATGTAAATGATTCCATTTCGTCGTGAAATCATGCCTTTCTGCTTGTTGTTGATGAGCAACTTTCCACTAAGCAAACGCAAAAGTATCGGCACAACGACTGATCGATGCTCGTCGGCTACCTGAACGTCACCTTCGTCATTGGACAGTTTAAACGACGGAAGGGTTTGTCTGAGTGTTTTCTCGT</canonical_amplicon>
		<polymorphic_amplicon>TGTAGACTTGCTTGAAAAATAGCTGAAGGAAGAACGTCAGCTCGTCGCTACGGCATCCACCAATGATGTAAATGATTCCATTTCGTCGTGAAATCATGCCTTTCTGYTTGTTGTTGATGAGCAACTTTCCACTAAGCAAACGCAAAAGTATCGGCACAACGACTGATCGATGCTCGTCGGCTACCTGAACGTCACCTTCGTCATTGGACAGTTTAAACGACGGAAGGGTTTGTCTGAGTGTTTTCTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34668</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>474788</contig_pos>
        <strand>+</strand>
        <context>ACAGTGTTTC[C/T]AAATGCCGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAGTTGAAAGCTAGAGGTAGCTTTCTATTAGAGTGTTCACAGTGTTTC</left_flank>
        <right_flank>AAATGCCGAAACTTCCAGGAACCACAAAGCGACATCTTACAACATTGAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTAAACGATGAGCGAGAATACGCGCGTTACAACCCGTTGATTTTTAAGAAATAGATCATGATCTAGTTCAAACCCGCGTTCATTTTAAAATTATTAAATTTCTTCTGGCCTACGAGTTTGCTGGGGCGCTTTTTCTGAGCCCCTCGCTTGAACCCAAGTGAACAACTAGTTTTTTAGCTATTTGCCAAATTCTGAAGGAAACCTTTTTTCCTTTCTTTGTACTGAAACGGTAAAAACGCAGGTGTCCTTGAGAACTCGGCAAATAACTGAAAAACTAGAAAAACAAAATTTGTGAATGTGAGTTTTCAATCTAGGCCTGTTTTATAATCTCCAAAAATTTCAAGATGATCGGACACTTGACAGCCAAGCTCCATACCCCAAAAAATGGTCAAAACCAACTGAAAAATACGTTTTGTATATCTTATGGACCGGTACTGTACATGGGCTTAAAGTTGAAAGCTAGAGGTAGCTTTCTATTAGAGTGTTCACAGTGTTTCCAAATGCCGAAACTTCCAGGAACCACAAAGCGACATCTTACAACATTGAATCCCTATTTAGTGATTGCACGGCTAGATATTCAGCAATCAGTGAGATAGATTTTCTACTAATGACAGTAAGAAAGCTACAGTAATCCATAGCACACAATTTATTAACTTCAGGACCCATCTTGCCATTCTGACATGGAAACGGATTTCCGACCAGTTTCCTTCTCATCTGCCACGTGTTGGAGTGATTTGATGAGACTGACTCAAAAGTGTTTTGCACTGAGTAGATGTTGTCCAGCTGCACAAAGATGTGGATCGGAAGTGGAAAGAGACATTATAAATGAGCAATATGAATTGGAAAAAAGTCAGATGAAGTCAAGATTGGAAGAGTGTGCAATTGATATGAATGCGGTTTTGAGAGCTCCGGTTTCTAGGTGTGGCATTTTGAGAGATTCTTTGTAAATCGGGCCTTTGGCGGGGCTTGGGCGGCCCTGTCATAGTTTCTTTTAGAAT</canonical>
            <polymorphic>TTTTAAACGATGAGCGAGAATACGCGCGTTACAACCCGTTGATTTTTAAGAAATAGATCATGATCTAGTTCAAACCCGCGTTCATTTTAAAATTATTAAATTTCTTCTGGCCTACGAGTTTGCTGGGGCGCTTTTTCTGAGCCCCTCGCTTGAACCCAAGTGAACAACTAGTTTTTTAGCTATTTGCCAAATTCTGAAGGAAACCTTTTTTCCTTTCTTTGTACTGAAACGGTAAAAACGCAGGTGTCCTTGAGAACTCGGCAAATAACTGAAAAACTAGAAAAACAAAATTTGTGAATGTGAGTTTTCAATCTAGGCCTGTTTTATAATCTCCAAAAATTTCAAGATGATCGGACACTTGACAGCCAAGCTCCATACCCCAAAAAATGGTCAAAACCAACTGAAAAATACGTTTTGTATATCTTATGGACCGGTACTGTACATGGGCTTAAAGTTGAAAGCTAGAGGTAGCTTTCTATTAGAGTGTTCACAGTGTTTCYAAATGCCGAAACTTCCAGGAACCACAAAGCGACATCTTACAACATTGAATCCCTATTTAGTGATTGCACGGCTAGATATTCAGCAATCAGTGAGATAGATTTTCTACTAATGACAGTAAGAAAGCTACAGTAATCCATAGCACACAATTTATTAACTTCAGGACCCATCTTGCCATTCTGACATGGAAACGGATTTCCGACCAGTTTCCTTCTCATCTGCCACGTGTTGGAGTGATTTGATGAGACTGACTCAAAAGTGTTTTGCACTGAGTAGATGTTGTCCAGCTGCACAAAGATGTGGATCGGAAGTGGAAAGAGACATTATAAATGAGCAATATGAATTGGAAAAAAGTCAGATGAAGTCAAGATTGGAAGAGTGTGCAATTGATATGAATGCGGTTTTGAGAGCTCCGGTTTCTAGGTGTGGCATTTTGAGAGATTCTTTGTAAATCGGGCCTTTGGCGGGGCTTGGGCGGCCCTGTCATAGTTTCTTTTAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTAAAGTTGAAAGCTAGAGGT</pcr_primer_p1>
		<pcr_primer_p2>GGGTCCTGAAGTTAATAAATTGT</pcr_primer_p2>
		<pcr_amplicon_size>220</pcr_amplicon_size>
		<canonical_amplicon>GCTTAAAGTTGAAAGCTAGAGGTAGCTTTCTATTAGAGTGTTCACAGTGTTTCCAAATGCCGAAACTTCCAGGAACCACAAAGCGACATCTTACAACATTGAATCCCTATTTAGTGATTGCACGGCTAGATATTCAGCAATCAGTGAGATAGATTTTCTACTAATGACAGTAAGAAAGCTACAGTAATCCATAGCACACAATTTATTAACTTCAGGACCC</canonical_amplicon>
		<polymorphic_amplicon>GCTTAAAGTTGAAAGCTAGAGGTAGCTTTCTATTAGAGTGTTCACAGTGTTTCYAAATGCCGAAACTTCCAGGAACCACAAAGCGACATCTTACAACATTGAATCCCTATTTAGTGATTGCACGGCTAGATATTCAGCAATCAGTGAGATAGATTTTCTACTAATGACAGTAAGAAAGCTACAGTAATCCATAGCACACAATTTATTAACTTCAGGACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34669</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>475285</contig_pos>
        <strand>+</strand>
        <context>GTTTCTTTTA[A/G]AATCAATATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAATCGGGCCTTTGGCGGGGCTTGGGCGGCCCTGTCATAGTTTCTTTTA</left_flank>
        <right_flank>AATCAATATAGTCGGGCCAACTAAATTAGATATGATAGAACTTGATGAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAAATGCCGAAACTTCCAGGAACCACAAAGCGACATCTTACAACATTGAATCCCTATTTAGTGATTGCACGGCTAGATATTCAGCAATCAGTGAGATAGATTTTCTACTAATGACAGTAAGAAAGCTACAGTAATCCATAGCACACAATTTATTAACTTCAGGACCCATCTTGCCATTCTGACATGGAAACGGATTTCCGACCAGTTTCCTTCTCATCTGCCACGTGTTGGAGTGATTTGATGAGACTGACTCAAAAGTGTTTTGCACTGAGTAGATGTTGTCCAGCTGCACAAAGATGTGGATCGGAAGTGGAAAGAGACATTATAAATGAGCAATATGAATTGGAAAAAAGTCAGATGAAGTCAAGATTGGAAGAGTGTGCAATTGATATGAATGCGGTTTTGAGAGCTCCGGTTTCTAGGTGTGGCATTTTGAGAGATTCTTTGTAAATCGGGCCTTTGGCGGGGCTTGGGCGGCCCTGTCATAGTTTCTTTTAGAATCAATATAGTCGGGCCAACTAAATTAGATATGATAGAACTTGATGAGTGCTACAGAATGAAAATTTTCTAAAAACTGTATCTGGTTCATGAACAAAGTCACATATGAAACAGGTCGAACAAACAGGCAGGGCCCGGTTCTACCACTTTATGGCTTATAACTTTGCTCATAGACAAGATACCGTTTTCCAAATAGCATTGTTTTGTAGATCTCATGAAGTTCTATCATATTCAATTTAGTTGGCTCAAAATTATTGATTCCGAAAGAAACTATGACAGGGCCCGCGAGGGATCCTTTGAAAACTTTTGTGTTTTCAGAGAAGATGCGATGATTGCCAGAAAAGTCAGTGAGGCGACGAAGGTTATGTTACGATCAGTTGTTCCATTCAGAATATATCCAGATCCACAGGTAGGGAAATTTACGGTTAACATGAGTCTCAATGAGAATTTCAGAAGAAAATGAGGCTGAAAACGGAACGAGGAAAGAAGGCAAGAGAGTT</canonical>
            <polymorphic>TCCAAATGCCGAAACTTCCAGGAACCACAAAGCGACATCTTACAACATTGAATCCCTATTTAGTGATTGCACGGCTAGATATTCAGCAATCAGTGAGATAGATTTTCTACTAATGACAGTAAGAAAGCTACAGTAATCCATAGCACACAATTTATTAACTTCAGGACCCATCTTGCCATTCTGACATGGAAACGGATTTCCGACCAGTTTCCTTCTCATCTGCCACGTGTTGGAGTGATTTGATGAGACTGACTCAAAAGTGTTTTGCACTGAGTAGATGTTGTCCAGCTGCACAAAGATGTGGATCGGAAGTGGAAAGAGACATTATAAATGAGCAATATGAATTGGAAAAAAGTCAGATGAAGTCAAGATTGGAAGAGTGTGCAATTGATATGAATGCGGTTTTGAGAGCTCCGGTTTCTAGGTGTGGCATTTTGAGAGATTCTTTGTAAATCGGGCCTTTGGCGGGGCTTGGGCGGCCCTGTCATAGTTTCTTTTARAATCAATATAGTCGGGCCAACTAAATTAGATATGATAGAACTTGATGAGTGCTACAGAATGAAAATTTTCTAAAAACTGTATCTGGTTCATGAACAAAGTCACATATGAAACAGGTCGAACAAACAGGCAGGGCCCGGTTCTACCACTTTATGGCTTATAACTTTGCTCATAGACAAGATACCGTTTTCCAAATAGCATTGTTTTGTAGATCTCATGAAGTTCTATCATATTCAATTTAGTTGGCTCAAAATTATTGATTCCGAAAGAAACTATGACAGGGCCCGCGAGGGATCCTTTGAAAACTTTTGTGTTTTCAGAGAAGATGCGATGATTGCCAGAAAAGTCAGTGAGGCGACGAAGGTTATGTTACGATCAGTTGTTCCATTCAGAATATATCCAGATCCACAGGTAGGGAAATTTACGGTTAACATGAGTCTCAATGAGAATTTCAGAAGAAAATGAGGCTGAAAACGGAACGAGGAAAGAAGGCAAGAGAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>257 201 190 176 67 59 50</canonical_bands>
                <polymorphic_bands>316 201 190 176 67 50</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>391 257 243 59 50</canonical_bands>
                <polymorphic_bands>391 316 243 50</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTGGAAAGAGACATTATAAATGAG</pcr_primer_p1>
		<pcr_primer_p2>ATTCTGTAGCACTCATCAAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTGGAAAGAGACATTATAAATGAGCAATATGAATTGGAAAAAAGTCAGATGAAGTCAAGATTGGAAGAGTGTGCAATTGATATGAATGCGGTTTTGAGAGCTCCGGTTTCTAGGTGTGGCATTTTGAGAGATTCTTTGTAAATCGGGCCTTTGGCGGGGCTTGGGCGGCCCTGTCATAGTTTCTTTTAGAATCAATATAGTCGGGCCAACTAAATTAGATATGATAGAACTTGATGAGTGCTACAGAAT</canonical_amplicon>
		<polymorphic_amplicon>AGTGGAAAGAGACATTATAAATGAGCAATATGAATTGGAAAAAAGTCAGATGAAGTCAAGATTGGAAGAGTGTGCAATTGATATGAATGCGGTTTTGAGAGCTCCGGTTTCTAGGTGTGGCATTTTGAGAGATTCTTTGTAAATCGGGCCTTTGGCGGGGCTTGGGCGGCCCTGTCATAGTTTCTTTTARAATCAATATAGTCGGGCCAACTAAATTAGATATGATAGAACTTGATGAGTGCTACAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34670</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>511057</contig_pos>
        <strand></strand>
        <context>caagtcggaa[A/G]attgaatttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTCACTGCTGTCGATTTTTCTGGTGTTTTTCCTTAAACAAGTCGGAA</left_flank>
        <right_flank>ATTGAATTTTTTGGTGGTAAAAAAATTGAATTAAAACTTAAAAACGAGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGGCGCAACATGAAAAGCTTTCCGTGACGGGCTCATCTGGATAAACTTGAGAATAATCAAAATCTGGCGAAGGATCTCTGGAATAAAATGTTGATTTCTTTAAAGCAGGAATTTGATTATACCTTCTCTCAGGGTTCTGTGAATATCTTCCGAGGAACTCGATGTCATCATCATCTTCGTCGTCGAAATGTCTATTGGCAGTTTTGAATTCCGAATAAAATCGAAAACTTTGGNNNNNNNNNNTTTTATTGAAATAGACAATACCGTAATCCCTGAAGCACAGAAAAGTATTTAAAAAGATGCCAGGCAAAAACTTCAATTAGGAGAGCCTACTGACTTAAAAAAATCGAAGCTGTGGAACAAAAAGACCGGTGGCCGTTGCCGAAGGTCCCACAACGACATCTACAGTAACCGGAAAATATTTCCGGTTTCCGTATTTTTTTTTTCGTTTTTCACTGCTGTCGATTTTTCTGGTGTTTTTCCTTAAACAAGTCGGAAAATTGAATTTTTTGGTGGTAAAAAAATTGAATTAAAACTTAAAAACGAGAAAATAAATCCGGAAAACAAAAACATTTTTAGGTTACGGTAGTTGTCGTTGTGGGACCACATCTCTGATTTTTTGGTACCAGCAATAGATCGACATGTTTCTTAGGTGTATGAAAAGCATACCGAATCCATATAAAAGCAATAAATTGACTCCGACCGCAACTTCATTGACATTGAAAACTTTCGGGTCGAGTGACGGCTCCATAACCTAAAATTTCATATTTTGCAATTTTTCGAATCCCCAATCATCTTGCAAAGTTTACCCTAGCTCCATATCGACTCACAACAGACATTGTTGTATTTTGATTTGTCAGCAATATTGCCAGGAAATCGAAAATATTGTTTTGGCTATAGAATGTTCTAGTTTCTGGTGCACAGAGGAGAAAATTGGGGAAAAACACAAAAAATTGTTTATTAGGACAGAATGAGCGTAGATAATAGAGAGAAACTATC</canonical>
            <polymorphic>TGGGCGCAACATGAAAAGCTTTCCGTGACGGGCTCATCTGGATAAACTTGAGAATAATCAAAATCTGGCGAAGGATCTCTGGAATAAAATGTTGATTTCTTTAAAGCAGGAATTTGATTATACCTTCTCTCAGGGTTCTGTGAATATCTTCCGAGGAACTCGATGTCATCATCATCTTCGTCGTCGAAATGTCTATTGGCAGTTTTGAATTCCGAATAAAATCGAAAACTTTGGNNNNNNNNNNTTTTATTGAAATAGACAATACCGTAATCCCTGAAGCACAGAAAAGTATTTAAAAAGATGCCAGGCAAAAACTTCAATTAGGAGAGCCTACTGACTTAAAAAAATCGAAGCTGTGGAACAAAAAGACCGGTGGCCGTTGCCGAAGGTCCCACAACGACATCTACAGTAACCGGAAAATATTTCCGGTTTCCGTATTTTTTTTTTCGTTTTTCACTGCTGTCGATTTTTCTGGTGTTTTTCCTTAAACAAGTCGGAARATTGAATTTTTTGGTGGTAAAAAAATTGAATTAAAACTTAAAAACGAGAAAATAAATCCGGAAAACAAAAACATTTTTAGGTTACGGTAGTTGTCGTTGTGGGACCACATCTCTGATTTTTTGGTACCAGCAATAGATCGACATGTTTCTTAGGTGTATGAAAAGCATACCGAATCCATATAAAAGCAATAAATTGACTCCGACCGCAACTTCATTGACATTGAAAACTTTCGGGTCGAGTGACGGCTCCATAACCTAAAATTTCATATTTTGCAATTTTTCGAATCCCCAATCATCTTGCAAAGTTTACCCTAGCTCCATATCGACTCACAACAGACATTGTTGTATTTTGATTTGTCAGCAATATTGCCAGGAAATCGAAAATATTGTTTTGGCTATAGAATGTTCTAGTTTCTGGTGCACAGAGGAGAAAATTGGGGAAAAACACAAAAAATTGTTTATTAGGACAGAATGAGCGTAGATAATAGAGAGAAACTATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>181 163 158 111 110 97 68 48 20 19 15 5 5</canonical_bands>
                <polymorphic_bands>186 163 158 111 110 97 68 48 20 19 15 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAACTTCAATTAGGAGAGC</pcr_primer_p1>
		<pcr_primer_p2>CATGTCGATCTATTGCTGGTA</pcr_primer_p2>
		<pcr_amplicon_size>337</pcr_amplicon_size>
		<canonical_amplicon>CAAAAACTTCAATTAGGAGAGCCTACTGACTTAAAAAAATCGAAGCTGTGGAACAAAAAGACCGGTGGCCGTTGCCGAAGGTCCCACAACGACATCTACAGTAACCGGAAAATATTTCCGGTTTCCGTATTTTTTTTTTCGTTTTTCACTGCTGTCGATTTTTCTGGTGTTTTTCCTTAAACAAGTCGGAAAATTGAATTTTTTGGTGGTAAAAAAATTGAATTAAAACTTAAAAACGAGAAAATAAATCCGGAAAACAAAAACATTTTTAGGTTACGGTAGTTGTCGTTGTGGGACCACATCTCTGATTTTTTGGTACCAGCAATAGATCGACATG</canonical_amplicon>
		<polymorphic_amplicon>CAAAAACTTCAATTAGGAGAGCCTACTGACTTAAAAAAATCGAAGCTGTGGAACAAAAAGACCGGTGGCCGTTGCCGAAGGTCCCACAACGACATCTACAGTAACCGGAAAATATTTCCGGTTTCCGTATTTTTTTTTTCGTTTTTCACTGCTGTCGATTTTTCTGGTGTTTTTCCTTAAACAAGTCGGAARATTGAATTTTTTGGTGGTAAAAAAATTGAATTAAAACTTAAAAACGAGAAAATAAATCCGGAAAACAAAAACATTTTTAGGTTACGGTAGTTGTCGTTGTGGGACCACATCTCTGATTTTTTGGTACCAGCAATAGATCGACATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34671</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>621615</contig_pos>
        <strand>+</strand>
        <context>GAAATTCAAA[A/C]AACTTTAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCGGCCATTTCTTGCTGGAACTTATTAGAATTAGAAAACGAAATTCAAA</left_flank>
        <right_flank>AACTTTAAAAGGGTATTATTTTTCCGGTCATAAAATCATTTATCGAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGAGAGTGGATGAAAAGGCACCCGCTAAGCATGCGACTCTGAAACAAAATAGTAGAGGGAACGGAGTTGCAAATCCCCATCTTATGAACAAATGCAACGACGGGGAGGGACGTGATAAAGGATCTGTGTGAGTTGAGTGTCCAATGTGCGAATTAAGAAAAAAAAATAAGTTGAATATAATAATGTGTACACACTACTATATATCACAGCCAATCAGATCAATGAATAGTAAAGAGGCATATGGAAATGGGGGATGGGGAAACTGTACAAAGGAAAAAAATACAAATGGGGACTACTATGACTGAAGCGGGAACAAATATACTTTGGTTTTTATGGACCGGTCAAAGATCATTCGATTTGAAAATCCAGCGAGAAACGTTACTGAGGGCCATCGGGCATCTCCTCATCTGCATCTCCAGCACCCACATGTCGTCGGAAGTTGTTGAATGCGGCCATTTCTTGCTGGAACTTATTAGAATTAGAAAACGAAATTCAAAAAACTTTAAAAGGGTATTATTTTTCCGGTCATAAAATCATTTATCGAAAAAATCGGTTAATTTTTTGTTCAAAATTCTCGAAGGTATATAAATATCGCCAAAATTGAACAAGTTTTTGAGCAAAAAAATTGTGTTTCAACAAATTTCTCTGAAATTACGAAATTTCTGGATTATTTTTCCCTCGAAACATACGGTAATTTTTACTACGCATTTTCATGGGAGCCCTTCTGTTACAGGTTCTACAGTAACTATTTTTAGAACAAAAACTTACAATGAGTCTCTGCGGCAAATCAGGTCTTGGCTGTCTTCTGCGATTGTGATTCTGGTTGTGTGCTATCGGTGGAGCTGGTCCAGGTCCATTGTTATCGACATCTTCTTCTGATGATGATCCGTCGTTGTCTCCGGCTGCTGCCCTAAGTCCAGCTGGTCCGGCTCCAGCAACTGCTATGATCATGTGTTGTTCCCCTCCACGATTATGGTGCCTGCGAGCTCGAGGCATCT</canonical>
            <polymorphic>GATGAGAGTGGATGAAAAGGCACCCGCTAAGCATGCGACTCTGAAACAAAATAGTAGAGGGAACGGAGTTGCAAATCCCCATCTTATGAACAAATGCAACGACGGGGAGGGACGTGATAAAGGATCTGTGTGAGTTGAGTGTCCAATGTGCGAATTAAGAAAAAAAAATAAGTTGAATATAATAATGTGTACACACTACTATATATCACAGCCAATCAGATCAATGAATAGTAAAGAGGCATATGGAAATGGGGGATGGGGAAACTGTACAAAGGAAAAAAATACAAATGGGGACTACTATGACTGAAGCGGGAACAAATATACTTTGGTTTTTATGGACCGGTCAAAGATCATTCGATTTGAAAATCCAGCGAGAAACGTTACTGAGGGCCATCGGGCATCTCCTCATCTGCATCTCCAGCACCCACATGTCGTCGGAAGTTGTTGAATGCGGCCATTTCTTGCTGGAACTTATTAGAATTAGAAAACGAAATTCAAAMAACTTTAAAAGGGTATTATTTTTCCGGTCATAAAATCATTTATCGAAAAAATCGGTTAATTTTTTGTTCAAAATTCTCGAAGGTATATAAATATCGCCAAAATTGAACAAGTTTTTGAGCAAAAAAATTGTGTTTCAACAAATTTCTCTGAAATTACGAAATTTCTGGATTATTTTTCCCTCGAAACATACGGTAATTTTTACTACGCATTTTCATGGGAGCCCTTCTGTTACAGGTTCTACAGTAACTATTTTTAGAACAAAAACTTACAATGAGTCTCTGCGGCAAATCAGGTCTTGGCTGTCTTCTGCGATTGTGATTCTGGTTGTGTGCTATCGGTGGAGCTGGTCCAGGTCCATTGTTATCGACATCTTCTTCTGATGATGATCCGTCGTTGTCTCCGGCTGCTGCCCTAAGTCCAGCTGGTCCGGCTCCAGCAACTGCTATGATCATGTGTTGTTCCCCTCCACGATTATGGTGCCTGCGAGCTCGAGGCATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCTCCTCATCTGCATCTC</pcr_primer_p1>
		<pcr_primer_p2>TTGCTCAAAAACTTGTTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>224</pcr_amplicon_size>
		<canonical_amplicon>CATCTCCTCATCTGCATCTCCAGCACCCACATGTCGTCGGAAGTTGTTGAATGCGGCCATTTCTTGCTGGAACTTATTAGAATTAGAAAACGAAATTCAAAAAACTTTAAAAGGGTATTATTTTTCCGGTCATAAAATCATTTATCGAAAAAATCGGTTAATTTTTTGTTCAAAATTCTCGAAGGTATATAAATATCGCCAAAATTGAACAAGTTTTTGAGCAA</canonical_amplicon>
		<polymorphic_amplicon>CATCTCCTCATCTGCATCTCCAGCACCCACATGTCGTCGGAAGTTGTTGAATGCGGCCATTTCTTGCTGGAACTTATTAGAATTAGAAAACGAAATTCAAAMAACTTTAAAAGGGTATTATTTTTCCGGTCATAAAATCATTTATCGAAAAAATCGGTTAATTTTTTGTTCAAAATTCTCGAAGGTATATAAATATCGCCAAAATTGAACAAGTTTTTGAGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34672</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>621783</contig_pos>
        <strand>+</strand>
        <context>GAAATTTCTG[A/G]ATTATTTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCAAAAAAATTGTGTTTCAACAAATTTCTCTGAAATTACGAAATTTCTG</left_flank>
        <right_flank>ATTATTTTTCCCTCGAAACATACGGTAATTTTTACTACGCATTTTCATGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAGTTGAATATAATAATGTGTACACACTACTATATATCACAGCCAATCAGATCAATGAATAGTAAAGAGGCATATGGAAATGGGGGATGGGGAAACTGTACAAAGGAAAAAAATACAAATGGGGACTACTATGACTGAAGCGGGAACAAATATACTTTGGTTTTTATGGACCGGTCAAAGATCATTCGATTTGAAAATCCAGCGAGAAACGTTACTGAGGGCCATCGGGCATCTCCTCATCTGCATCTCCAGCACCCACATGTCGTCGGAAGTTGTTGAATGCGGCCATTTCTTGCTGGAACTTATTAGAATTAGAAAACGAAATTCAAAAAACTTTAAAAGGGTATTATTTTTCCGGTCATAAAATCATTTATCGAAAAAATCGGTTAATTTTTTGTTCAAAATTCTCGAAGGTATATAAATATCGCCAAAATTGAACAAGTTTTTGAGCAAAAAAATTGTGTTTCAACAAATTTCTCTGAAATTACGAAATTTCTGGATTATTTTTCCCTCGAAACATACGGTAATTTTTACTACGCATTTTCATGGGAGCCCTTCTGTTACAGGTTCTACAGTAACTATTTTTAGAACAAAAACTTACAATGAGTCTCTGCGGCAAATCAGGTCTTGGCTGTCTTCTGCGATTGTGATTCTGGTTGTGTGCTATCGGTGGAGCTGGTCCAGGTCCATTGTTATCGACATCTTCTTCTGATGATGATCCGTCGTTGTCTCCGGCTGCTGCCCTAAGTCCAGCTGGTCCGGCTCCAGCAACTGCTATGATCATGTGTTGTTCCCCTCCACGATTATGGTGCCTGCGAGCTCGAGGCATCTGTGCCGCTTGCTCTTCCACCACTTCTCGGTCACGACGCTCGATTTGACGTCGGGCAGCCATTTCGAAAAGCATCTCAGCTCGAGCTACGGCCGCTTGATTCGGTAGTTCAGGGAGAGTTGCCTGAAACGTTCATCAAATTTAGTACTTTTGTTTGAACGTGGTTGTAT</canonical>
            <polymorphic>TAAGTTGAATATAATAATGTGTACACACTACTATATATCACAGCCAATCAGATCAATGAATAGTAAAGAGGCATATGGAAATGGGGGATGGGGAAACTGTACAAAGGAAAAAAATACAAATGGGGACTACTATGACTGAAGCGGGAACAAATATACTTTGGTTTTTATGGACCGGTCAAAGATCATTCGATTTGAAAATCCAGCGAGAAACGTTACTGAGGGCCATCGGGCATCTCCTCATCTGCATCTCCAGCACCCACATGTCGTCGGAAGTTGTTGAATGCGGCCATTTCTTGCTGGAACTTATTAGAATTAGAAAACGAAATTCAAAAAACTTTAAAAGGGTATTATTTTTCCGGTCATAAAATCATTTATCGAAAAAATCGGTTAATTTTTTGTTCAAAATTCTCGAAGGTATATAAATATCGCCAAAATTGAACAAGTTTTTGAGCAAAAAAATTGTGTTTCAACAAATTTCTCTGAAATTACGAAATTTCTGRATTATTTTTCCCTCGAAACATACGGTAATTTTTACTACGCATTTTCATGGGAGCCCTTCTGTTACAGGTTCTACAGTAACTATTTTTAGAACAAAAACTTACAATGAGTCTCTGCGGCAAATCAGGTCTTGGCTGTCTTCTGCGATTGTGATTCTGGTTGTGTGCTATCGGTGGAGCTGGTCCAGGTCCATTGTTATCGACATCTTCTTCTGATGATGATCCGTCGTTGTCTCCGGCTGCTGCCCTAAGTCCAGCTGGTCCGGCTCCAGCAACTGCTATGATCATGTGTTGTTCCCCTCCACGATTATGGTGCCTGCGAGCTCGAGGCATCTGTGCCGCTTGCTCTTCCACCACTTCTCGGTCACGACGCTCGATTTGACGTCGGGCAGCCATTTCGAAAAGCATCTCAGCTCGAGCTACGGCCGCTTGATTCGGTAGTTCAGGGAGAGTTGCCTGAAACGTTCATCAAATTTAGTACTTTTGTTTGAACGTGGTTGTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>408 366 137 89</canonical_bands>
                <polymorphic_bands>455 408 137</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATAAATATCGCCAAAATTGAAC</pcr_primer_p1>
		<pcr_primer_p2>ATAGCACACAACCAGAATCAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATAAATATCGCCAAAATTGAACAAGTTTTTGAGCAAAAAAATTGTGTTTCAACAAATTTCTCTGAAATTACGAAATTTCTGGATTATTTTTCCCTCGAAACATACGGTAATTTTTACTACGCATTTTCATGGGAGCCCTTCTGTTACAGGTTCTACAGTAACTATTTTTAGAACAAAAACTTACAATGAGTCTCTGCGGCAAATCAGGTCTTGGCTGTCTTCTGCGATTGTGATTCTGGTTGTGTGCTAT</canonical_amplicon>
		<polymorphic_amplicon>TATAAATATCGCCAAAATTGAACAAGTTTTTGAGCAAAAAAATTGTGTTTCAACAAATTTCTCTGAAATTACGAAATTTCTGRATTATTTTTCCCTCGAAACATACGGTAATTTTTACTACGCATTTTCATGGGAGCCCTTCTGTTACAGGTTCTACAGTAACTATTTTTAGAACAAAAACTTACAATGAGTCTCTGCGGCAAATCAGGTCTTGGCTGTCTTCTGCGATTGTGATTCTGGTTGTGTGCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34673</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>633701</contig_pos>
        <strand>+</strand>
        <context>TGCCGCTTTC[A/C]CAGATCGATC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTTCTGGAAAAATCCAATTGACGAGAAGAATGAAAAGGTGCCGCTTTC</left_flank>
        <right_flank>CAGATCGATCTCACAAAATGCACGAATCAATCAATCGAGGAAACAAGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTGAGTGTTTCAGAGCAATGCAAACTTCGTTCCTTTCAGCGTGTGCCTGAATACAAAGCTCCGGAGAAGACATGCGCTGCAGTATTAGCAGCGAAGTTCCGTAGTCTTCTGGTTCCGAATTCCGCACAACGGCGTTCCAGAAATACAACGAGTGTGTCAGCAAATCGAACTGTTTACTCCTTACCTGGATATCAAGCGCCGGAATGCGAGTTCAAGTTTTGTGGGAAGCTAACTTTGGATCGTGACTCGGCTGGTGACAGACAGTTCTATTTGGACGATGTCACATATCCACTGGAAGGAACGGTCAAACTTGTATCCCACTGCTCTTCTCTCCCGGAAGCTATCGATGTCGAGTATCGCGGATTTTTATACTTGTTCGACGAACGATCTCCAAATGGTGATGTAGCATGGGAAAGATATTGGGCGATGCTTCATCGTGGTGTCATCTTTTTCTGGAAAAATCCAATTGACGAGAAGAATGAAAAGGTGCCGCTTTCCCAGATCGATCTCACAAAATGCACGAATCAATCAATCGAGGAAACAAGAAATGAACGAGCACATGAATTCCATATTGAGCTTCTAATCGATCAAACTCCAAGCCTTCTTGAGAAGAGAAGGTATATTTCCAGTTCCTGTGAATTACATAACAATCATTTCTTTTTCAGAGTTGTGCTTGCTGCCGAATCAACTGATCATCTGTCTTCATGGCTGAACGCTATCAACGACACGCTGTATGTATTACGCTCGTGATAAATTCTTCCCTATCCATTATTCAACTTCTCATAACTGTTCTTTCTTCTTTTTTTGATTAGCCAAGATCTCACCTCTCGACTCATTGCTCCCCTTTTCTCCGTATTAGTTTTCGTAACAATTTTTCGTTAGCCTCTTTTGCTCCCCCATGACGGTGTAAACCCAATAGTAAGTATTATTTCAATTAGTTTTATAAGAATTTCCCCCATCTTACTTTCCAGCTATTCTTTGAGATTTCTCGTTTCTAC</canonical>
            <polymorphic>TAGTGAGTGTTTCAGAGCAATGCAAACTTCGTTCCTTTCAGCGTGTGCCTGAATACAAAGCTCCGGAGAAGACATGCGCTGCAGTATTAGCAGCGAAGTTCCGTAGTCTTCTGGTTCCGAATTCCGCACAACGGCGTTCCAGAAATACAACGAGTGTGTCAGCAAATCGAACTGTTTACTCCTTACCTGGATATCAAGCGCCGGAATGCGAGTTCAAGTTTTGTGGGAAGCTAACTTTGGATCGTGACTCGGCTGGTGACAGACAGTTCTATTTGGACGATGTCACATATCCACTGGAAGGAACGGTCAAACTTGTATCCCACTGCTCTTCTCTCCCGGAAGCTATCGATGTCGAGTATCGCGGATTTTTATACTTGTTCGACGAACGATCTCCAAATGGTGATGTAGCATGGGAAAGATATTGGGCGATGCTTCATCGTGGTGTCATCTTTTTCTGGAAAAATCCAATTGACGAGAAGAATGAAAAGGTGCCGCTTTCMCAGATCGATCTCACAAAATGCACGAATCAATCAATCGAGGAAACAAGAAATGAACGAGCACATGAATTCCATATTGAGCTTCTAATCGATCAAACTCCAAGCCTTCTTGAGAAGAGAAGGTATATTTCCAGTTCCTGTGAATTACATAACAATCATTTCTTTTTCAGAGTTGTGCTTGCTGCCGAATCAACTGATCATCTGTCTTCATGGCTGAACGCTATCAACGACACGCTGTATGTATTACGCTCGTGATAAATTCTTCCCTATCCATTATTCAACTTCTCATAACTGTTCTTTCTTCTTTTTTTGATTAGCCAAGATCTCACCTCTCGACTCATTGCTCCCCTTTTCTCCGTATTAGTTTTCGTAACAATTTTTCGTTAGCCTCTTTTGCTCCCCCATGACGGTGTAAACCCAATAGTAAGTATTATTTCAATTAGTTTTATAAGAATTTCCCCCATCTTACTTTCCAGCTATTCTTTGAGATTTCTCGTTTCTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTAGCATGGGAAAGATATTG</pcr_primer_p1>
		<pcr_primer_p2>GTTATGTAATTCACAGGAACTGG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATGTAGCATGGGAAAGATATTGGGCGATGCTTCATCGTGGTGTCATCTTTTTCTGGAAAAATCCAATTGACGAGAAGAATGAAAAGGTGCCGCTTTCCCAGATCGATCTCACAAAATGCACGAATCAATCAATCGAGGAAACAAGAAATGAACGAGCACATGAATTCCATATTGAGCTTCTAATCGATCAAACTCCAAGCCTTCTTGAGAAGAGAAGGTATATTTCCAGTTCCTGTGAATTACATAAC</canonical_amplicon>
		<polymorphic_amplicon>ATGTAGCATGGGAAAGATATTGGGCGATGCTTCATCGTGGTGTCATCTTTTTCTGGAAAAATCCAATTGACGAGAAGAATGAAAAGGTGCCGCTTTCMCAGATCGATCTCACAAAATGCACGAATCAATCAATCGAGGAAACAAGAAATGAACGAGCACATGAATTCCATATTGAGCTTCTAATCGATCAAACTCCAAGCCTTCTTGAGAAGAGAAGGTATATTTCCAGTTCCTGTGAATTACATAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34674</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>637174</contig_pos>
        <strand></strand>
        <context>tagaatattt[A/G]tttcaactac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACTCGTTTTTTTGTGCTGTATCTCAAAAACCAATTTGCCTAGAATATTT</left_flank>
        <right_flank>TTTCAACTACAGAAATGTAGAGCATAAATTTTTACACTTTTTTTTAGTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAACGAGGAATCGAATGAGGTCGTTGGTTATCTTTTTCTAAAATCTGAATCTCCGAGGAACCTCTCATCCTGTTTTGTACCTCATCTTCCCAGTCCCATCTTCTTCTTCGTTATTTTCCACATCCCGTTTTCAATCCTAGGTGCACTTGTTCTCCATTAAAAACCTGTTAACACTTTTTTTATCACTTTACCATTAAAATCATTTTTGACATCTTCTTCTGATTTATCACAATTTAGACAATGTACACTGTAGCAGTGACCGGTGGTGCTGGTCTCGTTGGTCGCTACGTTGTTCAACGACTTTTGGAGAATGAGCAAATCGCTGAAGTTCGAGTTATTGATAGACAAAGTACTTCGAGAGGTATGTTAAGCATCACAGCCCAGGATTTTTTTTTCGGAACGCTTTTGCAAATGCGTTCGGGCGCTAACATTTGAATACCGTAGTAAACACTCGTTTTTTTGTGCTGTATCTCAAAAACCAATTTGCCTAGAATATTTATTTCAACTACAGAAATGTAGAGCATAAATTTTTACACTTTTTTTTAGTTGAAAACTTTTTGATATCTTTTATGGTTCTGGAGAGGGCTTACAGATAGGGCGCAGTGATCTTTTTCTCGGGACGCCTTGTAAACGCACTCAAACGCACATAACCGTAAGGCTACAGTAAACTGATAACTAAAAAACGTTGATAACTAAAAAAACGTCCCGGGAAAAGCACCGTGATTGAAAATATTGATGTTTAAGATTCTGAAATTTTCAGAAGAGAGTCGCAAATTGAAGCTCTACTTGATGGATCTGAATGATAGGAAACCATTGGAGAATGCATTGTTGGGATGTGATGGAGTTATTCATTGTGCTCATGCACCATTTCCAATTCTATATTCAAAAAATAAGGCAGAAATCGATCAAATGTGGAGGGATAATCTGGATGGTAAGTTGTTCTTCCTAGGATTACTGTAACTTTCGGGTACGGAGCTGTGGAAGAGCCGGTCCCTGTGG</canonical>
            <polymorphic>CCAACGAGGAATCGAATGAGGTCGTTGGTTATCTTTTTCTAAAATCTGAATCTCCGAGGAACCTCTCATCCTGTTTTGTACCTCATCTTCCCAGTCCCATCTTCTTCTTCGTTATTTTCCACATCCCGTTTTCAATCCTAGGTGCACTTGTTCTCCATTAAAAACCTGTTAACACTTTTTTTATCACTTTACCATTAAAATCATTTTTGACATCTTCTTCTGATTTATCACAATTTAGACAATGTACACTGTAGCAGTGACCGGTGGTGCTGGTCTCGTTGGTCGCTACGTTGTTCAACGACTTTTGGAGAATGAGCAAATCGCTGAAGTTCGAGTTATTGATAGACAAAGTACTTCGAGAGGTATGTTAAGCATCACAGCCCAGGATTTTTTTTTCGGAACGCTTTTGCAAATGCGTTCGGGCGCTAACATTTGAATACCGTAGTAAACACTCGTTTTTTTGTGCTGTATCTCAAAAACCAATTTGCCTAGAATATTTRTTTCAACTACAGAAATGTAGAGCATAAATTTTTACACTTTTTTTTAGTTGAAAACTTTTTGATATCTTTTATGGTTCTGGAGAGGGCTTACAGATAGGGCGCAGTGATCTTTTTCTCGGGACGCCTTGTAAACGCACTCAAACGCACATAACCGTAAGGCTACAGTAAACTGATAACTAAAAAACGTTGATAACTAAAAAAACGTCCCGGGAAAAGCACCGTGATTGAAAATATTGATGTTTAAGATTCTGAAATTTTCAGAAGAGAGTCGCAAATTGAAGCTCTACTTGATGGATCTGAATGATAGGAAACCATTGGAGAATGCATTGTTGGGATGTGATGGAGTTATTCATTGTGCTCATGCACCATTTCCAATTCTATATTCAAAAAATAAGGCAGAAATCGATCAAATGTGGAGGGATAATCTGGATGGTAAGTTGTTCTTCCTAGGATTACTGTAACTTTCGGGTACGGAGCTGTGGAAGAGCCGGTCCCTGTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTGAATACCGTAGTAAACACT</pcr_primer_p1>
		<pcr_primer_p2>TCTTAAACATCAATATTTTCAATCA</pcr_primer_p2>
		<pcr_amplicon_size>317</pcr_amplicon_size>
		<canonical_amplicon>CATTTGAATACCGTAGTAAACACTCGTTTTTTTGTGCTGTATCTCAAAAACCAATTTGCCTAGAATATTTATTTCAACTACAGAAATGTAGAGCATAAATTTTTACACTTTTTTTTAGTTGAAAACTTTTTGATATCTTTTATGGTTCTGGAGAGGGCTTACAGATAGGGCGCAGTGATCTTTTTCTCGGGACGCCTTGTAAACGCACTCAAACGCACATAACCGTAAGGCTACAGTAAACTGATAACTAAAAAACGTTGATAACTAAAAAAACGTCCCGGGAAAAGCACCGTGATTGAAAATATTGATGTTTAAGA</canonical_amplicon>
		<polymorphic_amplicon>CATTTGAATACCGTAGTAAACACTCGTTTTTTTGTGCTGTATCTCAAAAACCAATTTGCCTAGAATATTTRTTTCAACTACAGAAATGTAGAGCATAAATTTTTACACTTTTTTTTAGTTGAAAACTTTTTGATATCTTTTATGGTTCTGGAGAGGGCTTACAGATAGGGCGCAGTGATCTTTTTCTCGGGACGCCTTGTAAACGCACTCAAACGCACATAACCGTAAGGCTACAGTAAACTGATAACTAAAAAACGTTGATAACTAAAAAAACGTCCCGGGAAAAGCACCGTGATTGAAAATATTGATGTTTAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34675</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>714205</contig_pos>
        <strand>+</strand>
        <context>GGAAATTGAA[A/T]AAATGATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATTGTTGCGATTTTCTGAAAATGAAACAAATAAGGAATGGAAATTGAA</left_flank>
        <right_flank>AAATGATTTTGTCTGTATGAACGTTTTCTGATACCGGGAAATATTTCAGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTAATCGTATAATCAATCGGTGGTTCGGGAGGCGGTACATAATGCAGAAACTGTTGAGATTTCCTGATTTCAACCGAATCTTGATTCGGAAAAACCCTTCTTCCGAGACGTTTTGGTTGGGAAGAAGACGAGTTTGACGAAGACATTTCAATGTAAACTCTGGAGCTGATAGGAATGGAATATTGAAGGAAGCGAGAAGAAAAAGAGGAGGAGAAGGTTATCAGTTAAAATGAAGAACAAAAAGAAAACTGATTAGAAGGAGTACTCAACAAGTTGTAGACCGAAGAAAGGCGACAGGTTGCAAAAGAGCACGGAGCCAGTCATGGGGGTGGTCGACATCGTGACCTACTGTTTTATGGGTGAGAGAAAAAGAAGAAATGGTAGCTAATTTTTAGTTTTTGATTTTTTTTTTCCGAAATGATGATTCGATAGGTTTTATATTAAAAGAAATTGTTGCGATTTTCTGAAAATGAAACAAATAAGGAATGGAAATTGAATAAATGATTTTGTCTGTATGAACGTTTTCTGATACCGGGAAATATTTCAGGATCAGAGTTTTTCCGTCGGTCTGAATCTGTTTGGGCAGGGGACAACATTCCAACTGTCAAGTTTTCTGAAATCTAATATTTGGAAGGTTTTGGAAATAGTTCATTTTTTCTAATTCAATAAGAGCCCTTCTTTTTTTCCGGTCATTTCTTCCGACAATTTCATTCGAAAATCCGGTGAATTCTCACATGAAAATTTGCCAGTTTTCGAGCAAAATATTGCAACACATTTATCTGAAATTGTGAAATTTCCGGAATATATTTCACTGAAAAAATACGGAAGTTTTTAATTTCAAACAGCACAATGAATAGGGAGGCCTTCTAGGGGCTCTTCTGTTGGATGGGTCATTCTAAAATGATACTGTAGCAATTCTATTACAGGTTTCACGATATGTTGTATGGAAGATTATGACCAATGGTTTGCTTGACCGCATCTAGGACCACAAACTTATA</canonical>
            <polymorphic>CTCTAATCGTATAATCAATCGGTGGTTCGGGAGGCGGTACATAATGCAGAAACTGTTGAGATTTCCTGATTTCAACCGAATCTTGATTCGGAAAAACCCTTCTTCCGAGACGTTTTGGTTGGGAAGAAGACGAGTTTGACGAAGACATTTCAATGTAAACTCTGGAGCTGATAGGAATGGAATATTGAAGGAAGCGAGAAGAAAAAGAGGAGGAGAAGGTTATCAGTTAAAATGAAGAACAAAAAGAAAACTGATTAGAAGGAGTACTCAACAAGTTGTAGACCGAAGAAAGGCGACAGGTTGCAAAAGAGCACGGAGCCAGTCATGGGGGTGGTCGACATCGTGACCTACTGTTTTATGGGTGAGAGAAAAAGAAGAAATGGTAGCTAATTTTTAGTTTTTGATTTTTTTTTTCCGAAATGATGATTCGATAGGTTTTATATTAAAAGAAATTGTTGCGATTTTCTGAAAATGAAACAAATAAGGAATGGAAATTGAAWAAATGATTTTGTCTGTATGAACGTTTTCTGATACCGGGAAATATTTCAGGATCAGAGTTTTTCCGTCGGTCTGAATCTGTTTGGGCAGGGGACAACATTCCAACTGTCAAGTTTTCTGAAATCTAATATTTGGAAGGTTTTGGAAATAGTTCATTTTTTCTAATTCAATAAGAGCCCTTCTTTTTTTCCGGTCATTTCTTCCGACAATTTCATTCGAAAATCCGGTGAATTCTCACATGAAAATTTGCCAGTTTTCGAGCAAAATATTGCAACACATTTATCTGAAATTGTGAAATTTCCGGAATATATTTCACTGAAAAAATACGGAAGTTTTTAATTTCAAACAGCACAATGAATAGGGAGGCCTTCTAGGGGCTCTTCTGTTGGATGGGTCATTCTAAAATGATACTGTAGCAATTCTATTACAGGTTTCACGATATGTTGTATGGAAGATTATGACCAATGGTTTGCTTGACCGCATCTAGGACCACAAACTTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGAAAAAGAAGAAATGGTAGC</pcr_primer_p1>
		<pcr_primer_p2>AACTTGACAGTTGGAATGTTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGAGAAAAAGAAGAAATGGTAGCTAATTTTTAGTTTTTGATTTTTTTTTTCCGAAATGATGATTCGATAGGTTTTATATTAAAAGAAATTGTTGCGATTTTCTGAAAATGAAACAAATAAGGAATGGAAATTGAATAAATGATTTTGTCTGTATGAACGTTTTCTGATACCGGGAAATATTTCAGGATCAGAGTTTTTCCGTCGGTCTGAATCTGTTTGGGCAGGGGACAACATTCCAACTGTCAAGTT</canonical_amplicon>
		<polymorphic_amplicon>AGAGAAAAAGAAGAAATGGTAGCTAATTTTTAGTTTTTGATTTTTTTTTTCCGAAATGATGATTCGATAGGTTTTATATTAAAAGAAATTGTTGCGATTTTCTGAAAATGAAACAAATAAGGAATGGAAATTGAAWAAATGATTTTGTCTGTATGAACGTTTTCTGATACCGGGAAATATTTCAGGATCAGAGTTTTTCCGTCGGTCTGAATCTGTTTGGGCAGGGGACAACATTCCAACTGTCAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34676</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>714461</contig_pos>
        <strand></strand>
        <context>tgccagtttt[C/T]gagcaaaata</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTCATTCGAAAATCCGGTGAATTCTCACATGAAAATTTGCCAGTTTT</left_flank>
        <right_flank>GAGCAAAATATTGCAACACATTTATCTGAAATTGTGAAATTTCCGGAATA</right_flank>
        <qual_score>46</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAGGAGTACTCAACAAGTTGTAGACCGAAGAAAGGCGACAGGTTGCAAAAGAGCACGGAGCCAGTCATGGGGGTGGTCGACATCGTGACCTACTGTTTTATGGGTGAGAGAAAAAGAAGAAATGGTAGCTAATTTTTAGTTTTTGATTTTTTTTTTCCGAAATGATGATTCGATAGGTTTTATATTAAAAGAAATTGTTGCGATTTTCTGAAAATGAAACAAATAAGGAATGGAAATTGAATAAATGATTTTGTCTGTATGAACGTTTTCTGATACCGGGAAATATTTCAGGATCAGAGTTTTTCCGTCGGTCTGAATCTGTTTGGGCAGGGGACAACATTCCAACTGTCAAGTTTTCTGAAATCTAATATTTGGAAGGTTTTGGAAATAGTTCATTTTTTCTAATTCAATAAGAGCCCTTCTTTTTTTCCGGTCATTTCTTCCGACAATTTCATTCGAAAATCCGGTGAATTCTCACATGAAAATTTGCCAGTTTTCGAGCAAAATATTGCAACACATTTATCTGAAATTGTGAAATTTCCGGAATATATTTCACTGAAAAAATACGGAAGTTTTTAATTTCAAACAGCACAATGAATAGGGAGGCCTTCTAGGGGCTCTTCTGTTGGATGGGTCATTCTAAAATGATACTGTAGCAATTCTATTACAGGTTTCACGATATGTTGTATGGAAGATTATGACCAATGGTTTGCTTGACCGCATCTAGGACCACAAACTTATAAAAGAAGTTTTCTCTAGATGAAAAAAATGAGTTTCGTGCTTAACAGGTAAAACATTTTAAAAGCTGAACACACTCACATAAAACCTCACATCTTAAAACAACAATTCTAAATTTTTATCAATTTACCCTTTCAAAAAGGCGTTAAAATGCAACGGCTTATCGTTTTGGAATGACCCTCCTTCTTTCGAAACCACACTCTTTAAAATTTGATTACTGTAAAAAAGGACACAAAGTGGAAGAAGTTTATATTCGAAAA</canonical>
            <polymorphic>AGAAGGAGTACTCAACAAGTTGTAGACCGAAGAAAGGCGACAGGTTGCAAAAGAGCACGGAGCCAGTCATGGGGGTGGTCGACATCGTGACCTACTGTTTTATGGGTGAGAGAAAAAGAAGAAATGGTAGCTAATTTTTAGTTTTTGATTTTTTTTTTCCGAAATGATGATTCGATAGGTTTTATATTAAAAGAAATTGTTGCGATTTTCTGAAAATGAAACAAATAAGGAATGGAAATTGAATAAATGATTTTGTCTGTATGAACGTTTTCTGATACCGGGAAATATTTCAGGATCAGAGTTTTTCCGTCGGTCTGAATCTGTTTGGGCAGGGGACAACATTCCAACTGTCAAGTTTTCTGAAATCTAATATTTGGAAGGTTTTGGAAATAGTTCATTTTTTCTAATTCAATAAGAGCCCTTCTTTTTTTCCGGTCATTTCTTCCGACAATTTCATTCGAAAATCCGGTGAATTCTCACATGAAAATTTGCCAGTTTTYGAGCAAAATATTGCAACACATTTATCTGAAATTGTGAAATTTCCGGAATATATTTCACTGAAAAAATACGGAAGTTTTTAATTTCAAACAGCACAATGAATAGGGAGGCCTTCTAGGGGCTCTTCTGTTGGATGGGTCATTCTAAAATGATACTGTAGCAATTCTATTACAGGTTTCACGATATGTTGTATGGAAGATTATGACCAATGGTTTGCTTGACCGCATCTAGGACCACAAACTTATAAAAGAAGTTTTCTCTAGATGAAAAAAATGAGTTTCGTGCTTAACAGGTAAAACATTTTAAAAGCTGAACACACTCACATAAAACCTCACATCTTAAAACAACAATTCTAAATTTTTATCAATTTACCCTTTCAAAAAGGCGTTAAAATGCAACGGCTTATCGTTTTGGAATGACCCTCCTTCTTTCGAAACCACACTCTTTAAAATTTGATTACTGTAAAAAAGGACACAAAGTGGAAGAAGTTTATATTCGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>430 286 93 80 65 41 5</canonical_bands>
                <polymorphic_bands>471 286 93 80 65 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATTCCAACTGTCAAGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAATTAAAAACTTCCGTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATTCCAACTGTCAAGTTTTCTGAAATCTAATATTTGGAAGGTTTTGGAAATAGTTCATTTTTTCTAATTCAATAAGAGCCCTTCTTTTTTTCCGGTCATTTCTTCCGACAATTTCATTCGAAAATCCGGTGAATTCTCACATGAAAATTTGCCAGTTTTCGAGCAAAATATTGCAACACATTTATCTGAAATTGTGAAATTTCCGGAATATATTTCACTGAAAAAATACGGAAGTTTTTAATTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>ACATTCCAACTGTCAAGTTTTCTGAAATCTAATATTTGGAAGGTTTTGGAAATAGTTCATTTTTTCTAATTCAATAAGAGCCCTTCTTTTTTTCCGGTCATTTCTTCCGACAATTTCATTCGAAAATCCGGTGAATTCTCACATGAAAATTTGCCAGTTTTYGAGCAAAATATTGCAACACATTTATCTGAAATTGTGAAATTTCCGGAATATATTTCACTGAAAAAATACGGAAGTTTTTAATTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34677</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>763864</contig_pos>
        <strand></strand>
        <context>taattaacaa[C/T]atttttgtaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTAACCTAAAAATATTTTAAAAAATAGAGCCTAATGTTTGTAATTAACAA</left_flank>
        <right_flank>ATTTTTGTAAATCCTGGTCTTGAAGAGACATGCCACATCGCCCCTGTCTT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAACCGAAACTCGACACAATAGAAATACACTCGACGATCAAACACCTTTCTTCTCTCCCGGATTTGCAACTTCCAATTAGTGAGCTTTCGTTTGGTCAAACATGTCTGACGACGGGATAAAAAAGAAGCCTGGAGGACCGATCTCTTAGTCTTTTTTTTTCCCTGCCGTCCACTCGTTCATTAGAGAAGCAAGGGATTCAGAATACACATAGATAAACACATTCTCAGGTTTCTATTCAAAGAAACAGATTCTCAAGAAGTGTCTTCTAGCACGTCGTATATCCCAGATTTGGCGTCATTTTGCAACGGCACTTTGATTTATCTCTGGGAAAACGACATGCTTTGATCGTTGACTTGTATTATTGCTCATTGCTCAATTAGCAAGAAAAAATGACGATATGTTTTATTTTGGTGGCAGTGGTGAAAAGTCACACAACGACAACTACAGTAACCTAAAAATATTTTAAAAAATAGAGCCTAATGTTTGTAATTAACAACATTTTTGTAAATCCTGGTCTTGAAGAGACATGCCACATCGCCCCTGTCTTTTGGCACCGACCGTTGGCGGCGCCTTGAGAGTAGATCACTTCCATATCTCTTCAGGTTTAAGATTTACAAAAAAGTTTTCAACTACAAAAGAAAGCTCTGGATTTGTTTAGTATACTTCAGAATTGTATTCAAAATCCAATTAGTTCTAGACACTTTTTTCACCTCTGAAAAATGGACATTAAACGAAAAAAATTGGAATTTCTCCTAGCAACTTGTTCGAGTGGAGTTCAAGGTTTGAAATGTTTTTTTTAGTTTTTTGAACTTTTTTTAAAAAATTTTTGACTTATTAGAAAGTTCGAGAATCTCTAGTTTTCTTTGTCATTGTAAAATCTTCGGCCACGGCCAACGGCATTTCTCTTCCACAGCTCCAATTTTTTGTACCAGACCCATAAGACCTCTTTGCCAAAATCCAAAGACGTTTTTCCAATCTCACACCAGTCACACTGTTT</canonical>
            <polymorphic>TAAAACCGAAACTCGACACAATAGAAATACACTCGACGATCAAACACCTTTCTTCTCTCCCGGATTTGCAACTTCCAATTAGTGAGCTTTCGTTTGGTCAAACATGTCTGACGACGGGATAAAAAAGAAGCCTGGAGGACCGATCTCTTAGTCTTTTTTTTTCCCTGCCGTCCACTCGTTCATTAGAGAAGCAAGGGATTCAGAATACACATAGATAAACACATTCTCAGGTTTCTATTCAAAGAAACAGATTCTCAAGAAGTGTCTTCTAGCACGTCGTATATCCCAGATTTGGCGTCATTTTGCAACGGCACTTTGATTTATCTCTGGGAAAACGACATGCTTTGATCGTTGACTTGTATTATTGCTCATTGCTCAATTAGCAAGAAAAAATGACGATATGTTTTATTTTGGTGGCAGTGGTGAAAAGTCACACAACGACAACTACAGTAACCTAAAAATATTTTAAAAAATAGAGCCTAATGTTTGTAATTAACAAYATTTTTGTAAATCCTGGTCTTGAAGAGACATGCCACATCGCCCCTGTCTTTTGGCACCGACCGTTGGCGGCGCCTTGAGAGTAGATCACTTCCATATCTCTTCAGGTTTAAGATTTACAAAAAAGTTTTCAACTACAAAAGAAAGCTCTGGATTTGTTTAGTATACTTCAGAATTGTATTCAAAATCCAATTAGTTCTAGACACTTTTTTCACCTCTGAAAAATGGACATTAAACGAAAAAAATTGGAATTTCTCCTAGCAACTTGTTCGAGTGGAGTTCAAGGTTTGAAATGTTTTTTTTAGTTTTTTGAACTTTTTTTAAAAAATTTTTGACTTATTAGAAAGTTCGAGAATCTCTAGTTTTCTTTGTCATTGTAAAATCTTCGGCCACGGCCAACGGCATTTCTCTTCCACAGCTCCAATTTTTTGTACCAGACCCATAAGACCTCTTTGCCAAAATCCAAAGACGTTTTTCCAATCTCACACCAGTCACACTGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGACTTGTATTATTGCTCATTG</pcr_primer_p1>
		<pcr_primer_p2>TTAATGTCCATTTTTCAGAGGT</pcr_primer_p2>
		<pcr_amplicon_size>382</pcr_amplicon_size>
		<canonical_amplicon>TTGACTTGTATTATTGCTCATTGCTCAATTAGCAAGAAAAAATGACGATATGTTTTATTTTGGTGGCAGTGGTGAAAAGTCACACAACGACAACTACAGTAACCTAAAAATATTTTAAAAAATAGAGCCTAATGTTTGTAATTAACAACATTTTTGTAAATCCTGGTCTTGAAGAGACATGCCACATCGCCCCTGTCTTTTGGCACCGACCGTTGGCGGCGCCTTGAGAGTAGATCACTTCCATATCTCTTCAGGTTTAAGATTTACAAAAAAGTTTTCAACTACAAAAGAAAGCTCTGGATTTGTTTAGTATACTTCAGAATTGTATTCAAAATCCAATTAGTTCTAGACACTTTTTTCACCTCTGAAAAATGGACATTAA</canonical_amplicon>
		<polymorphic_amplicon>TTGACTTGTATTATTGCTCATTGCTCAATTAGCAAGAAAAAATGACGATATGTTTTATTTTGGTGGCAGTGGTGAAAAGTCACACAACGACAACTACAGTAACCTAAAAATATTTTAAAAAATAGAGCCTAATGTTTGTAATTAACAAYATTTTTGTAAATCCTGGTCTTGAAGAGACATGCCACATCGCCCCTGTCTTTTGGCACCGACCGTTGGCGGCGCCTTGAGAGTAGATCACTTCCATATCTCTTCAGGTTTAAGATTTACAAAAAAGTTTTCAACTACAAAAGAAAGCTCTGGATTTGTTTAGTATACTTCAGAATTGTATTCAAAATCCAATTAGTTCTAGACACTTTTTTCACCTCTGAAAAATGGACATTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34678</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>764866</contig_pos>
        <strand>+</strand>
        <context>AAACTTACCT[A/C]CCCAACCCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCAGATGTTTCCAATTCATTCAAAGTGACGAATTATTTCTAAACTTACCT</left_flank>
        <right_flank>CCCAACCCCAAGTACCCCCTGATTATCTGTTTCATCTCAAACACGCAATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAATTTCCATAACATTTACTGCTCAAACACCATTTTTTCTTGGAATAGAATCAAAAGTACTTGAGATTCCAGAATGCATCTCTCGAGTAGGCAACTGATTAGGAAGTTCAATTCCCAGTGAAACATTCTAGACAACATGAGTTCGAAACCATCTGCGTCACTCTAAACCCGCGAATGAGAGAAAAAAACCAGAATTTGGCTGTGTGTGTGGGAGGTGTCTCATTTTGTATGCACATTCGGACGGAAGTTCAATCGTTTTTCGTTTCAGTTTTTTGGAGTACACAGCTTTTCTCTCTGTCTCTTCTTCCCCATTTCAGACTTTTTGAGCTGTTCTTTTCCCCTATTCAAAGGGTTGTCCTAGTGAATCGTGTCCATATTGAATGGAGTTTCGTTTTTTGAAAACCAACAAAGTTTCTCTTGGTGAGAATAAAAGAGTCCCTAGTCCCCCCAGATGTTTCCAATTCATTCAAAGTGACGAATTATTTCTAAACTTACCTCCCCAACCCCAAGTACCCCCTGATTATCTGTTTCATCTCAAACACGCAATCTCTTCTTAAAATGAATCTTATACTCAGAAAAGGCAGTTTTGGTGCTAAGAGCGAGTATCGTTTTACACATGCCTTCCGTTATTTTCGTTATTTTCTGGGGATTTTTTGTGGGTTTTGAATGAAGACGACGAAGAAAATCGTTTCTCTTTGTCTTCTTTTCATTATTTTTCCATCCAGAATTTTTTGTTTTCTATTGCAATTTTGAATTCATTTTTCCATGGAAAACTCGTTCAGTTTTTTTTTCCAGGCAGATATTTTTGAATGTTGACTAGAATTAGACATTTCCTGAAAATCATACGACTGACCTCGAAAATGAGTAGGTCATGAGTGTATACCCTTGGTCACACTCTATTTAATTTTCATAAAAAATTTTAATGACTCAAAGATCAACTCGATGAATATAAATAGAATATATAGGGAAGAAGCTAAAACTAGACAACATAGAATTCC</canonical>
            <polymorphic>TTCAATTTCCATAACATTTACTGCTCAAACACCATTTTTTCTTGGAATAGAATCAAAAGTACTTGAGATTCCAGAATGCATCTCTCGAGTAGGCAACTGATTAGGAAGTTCAATTCCCAGTGAAACATTCTAGACAACATGAGTTCGAAACCATCTGCGTCACTCTAAACCCGCGAATGAGAGAAAAAAACCAGAATTTGGCTGTGTGTGTGGGAGGTGTCTCATTTTGTATGCACATTCGGACGGAAGTTCAATCGTTTTTCGTTTCAGTTTTTTGGAGTACACAGCTTTTCTCTCTGTCTCTTCTTCCCCATTTCAGACTTTTTGAGCTGTTCTTTTCCCCTATTCAAAGGGTTGTCCTAGTGAATCGTGTCCATATTGAATGGAGTTTCGTTTTTTGAAAACCAACAAAGTTTCTCTTGGTGAGAATAAAAGAGTCCCTAGTCCCCCCAGATGTTTCCAATTCATTCAAAGTGACGAATTATTTCTAAACTTACCTMCCCAACCCCAAGTACCCCCTGATTATCTGTTTCATCTCAAACACGCAATCTCTTCTTAAAATGAATCTTATACTCAGAAAAGGCAGTTTTGGTGCTAAGAGCGAGTATCGTTTTACACATGCCTTCCGTTATTTTCGTTATTTTCTGGGGATTTTTTGTGGGTTTTGAATGAAGACGACGAAGAAAATCGTTTCTCTTTGTCTTCTTTTCATTATTTTTCCATCCAGAATTTTTTGTTTTCTATTGCAATTTTGAATTCATTTTTCCATGGAAAACTCGTTCAGTTTTTTTTTCCAGGCAGATATTTTTGAATGTTGACTAGAATTAGACATTTCCTGAAAATCATACGACTGACCTCGAAAATGAGTAGGTCATGAGTGTATACCCTTGGTCACACTCTATTTAATTTTCATAAAAAATTTTAATGACTCAAAGATCAACTCGATGAATATAAATAGAATATATAGGGAAGAAGCTAAAACTAGACAACATAGAATTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAACCAACAAAGTTTCTCT</pcr_primer_p1>
		<pcr_primer_p2>CCAGAAAATAACGAAAATAACG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAAAACCAACAAAGTTTCTCTTGGTGAGAATAAAAGAGTCCCTAGTCCCCCCAGATGTTTCCAATTCATTCAAAGTGACGAATTATTTCTAAACTTACCTCCCCAACCCCAAGTACCCCCTGATTATCTGTTTCATCTCAAACACGCAATCTCTTCTTAAAATGAATCTTATACTCAGAAAAGGCAGTTTTGGTGCTAAGAGCGAGTATCGTTTTACACATGCCTTCCGTTATTTTCGTTATTTTCTGG</canonical_amplicon>
		<polymorphic_amplicon>TGAAAACCAACAAAGTTTCTCTTGGTGAGAATAAAAGAGTCCCTAGTCCCCCCAGATGTTTCCAATTCATTCAAAGTGACGAATTATTTCTAAACTTACCTMCCCAACCCCAAGTACCCCCTGATTATCTGTTTCATCTCAAACACGCAATCTCTTCTTAAAATGAATCTTATACTCAGAAAAGGCAGTTTTGGTGCTAAGAGCGAGTATCGTTTTACACATGCCTTCCGTTATTTTCGTTATTTTCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34679</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>772007</contig_pos>
        <strand></strand>
        <context>TTCTTCCTCT[A/T]TTTTTTTGCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTACATTTCTACACTTTTTGTAGCCCTATGAATGTCCGTTTCTTCCTCT</left_flank>
        <right_flank>TTTTTTTGCCCATGTATGTCAAGTTGAGAATGCCTATATCCTAGTATTTA</right_flank>
        <qual_score>50</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATTTCAGAAAAACAATCCCCAGATGGATGTGATACTCCTCTCCGTGGATCTGCCAAAACCTTGACAGCCAGAACAAACTAATTTATTATACTTTCTCGATTTAGAAACCCAAGTAGTCTTTTTTTCATAATTTATTTCCCATTTTTCCTCTCGAAAACAGTTCAAAACGATCTCCACCCCACCTGTATTTTAGCTGAAAGTGTACATTACACTGGTCTCTCCTTTTTCTGTGATTCATCTCATTTTTTTTCTTCAGACTCGTCCCGTTGTTCTCAATAAAAAAATTTCTGAATAATTTGCGTTTTTTTCTCGTTTACAAAAAGCCGAAAATGATGAATAGGCCTTTGTGATTCGAACTCTCGAACATCATCATCTTGTGTCGATCGGGCGCCCTTTCTCTCTCTTCTACAGCTAGTATAATTATGTAGATGAAGACGCAACTGGTAGTTACATTTCTACACTTTTTGTAGCCCTATGAATGTCCGTTTCTTCCTCTATTTTTTTGCCCATGTATGTCAAGTTGAGAATGCCTATATCCTAGTATTTATGGGTCGAAGGCACAAAAAACGATTTGGAGGCGGAGTCAATATATATTGGCAAGATGCCAATAGACTTTGCTTCTTCCCGCAAACCAGTAAAACCCATCACGGATCATTGGAGGACACTCCCGACGGTCACTTCTTATTCGCTTTTCACTTTTTTAGTTCTTTCCTCGGTTTTTTATTGTTTCTCCAGAAGTTTAGAATCTCCCCCAATTGTTTCACCTTCAGACAAAGTTTTTTCATACTTCTGAACATAAATCCACTTGGATTGTTTGCTGGTTGTGTCTTGCCCCACGTAACACTAAAGTGTTCATTTACTATTTGGTATTCAAAAGAATACACTCTATTCGCGGCCTTGTTTGAAAGCGTGTGTGATAATGTTGATTGGATTTAATTTATGAATGAAATCGTCACATTTAATCAGAATGCTACTTTATAGTACCTATCAAAAACTT</canonical>
            <polymorphic>TAAATTTCAGAAAAACAATCCCCAGATGGATGTGATACTCCTCTCCGTGGATCTGCCAAAACCTTGACAGCCAGAACAAACTAATTTATTATACTTTCTCGATTTAGAAACCCAAGTAGTCTTTTTTTCATAATTTATTTCCCATTTTTCCTCTCGAAAACAGTTCAAAACGATCTCCACCCCACCTGTATTTTAGCTGAAAGTGTACATTACACTGGTCTCTCCTTTTTCTGTGATTCATCTCATTTTTTTTCTTCAGACTCGTCCCGTTGTTCTCAATAAAAAAATTTCTGAATAATTTGCGTTTTTTTCTCGTTTACAAAAAGCCGAAAATGATGAATAGGCCTTTGTGATTCGAACTCTCGAACATCATCATCTTGTGTCGATCGGGCGCCCTTTCTCTCTCTTCTACAGCTAGTATAATTATGTAGATGAAGACGCAACTGGTAGTTACATTTCTACACTTTTTGTAGCCCTATGAATGTCCGTTTCTTCCTCTWTTTTTTTGCCCATGTATGTCAAGTTGAGAATGCCTATATCCTAGTATTTATGGGTCGAAGGCACAAAAAACGATTTGGAGGCGGAGTCAATATATATTGGCAAGATGCCAATAGACTTTGCTTCTTCCCGCAAACCAGTAAAACCCATCACGGATCATTGGAGGACACTCCCGACGGTCACTTCTTATTCGCTTTTCACTTTTTTAGTTCTTTCCTCGGTTTTTTATTGTTTCTCCAGAAGTTTAGAATCTCCCCCAATTGTTTCACCTTCAGACAAAGTTTTTTCATACTTCTGAACATAAATCCACTTGGATTGTTTGCTGGTTGTGTCTTGCCCCACGTAACACTAAAGTGTTCATTTACTATTTGGTATTCAAAAGAATACACTCTATTCGCGGCCTTGTTTGAAAGCGTGTGTGATAATGTTGATTGGATTTAATTTATGAATGAAATCGTCACATTTAATCAGAATGCTACTTTATAGTACCTATCAAAAACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTACAAAAAGCCGAAAATG</pcr_primer_p1>
		<pcr_primer_p2>GCCTTCGACCCATAAATACTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTACAAAAAGCCGAAAATGATGAATAGGCCTTTGTGATTCGAACTCTCGAACATCATCATCTTGTGTCGATCGGGCGCCCTTTCTCTCTCTTCTACAGCTAGTATAATTATGTAGATGAAGACGCAACTGGTAGTTACATTTCTACACTTTTTGTAGCCCTATGAATGTCCGTTTCTTCCTCTATTTTTTTGCCCATGTATGTCAAGTTGAGAATGCCTATATCCTAGTATTTATGGGTCGAAGGC</canonical_amplicon>
		<polymorphic_amplicon>TTTACAAAAAGCCGAAAATGATGAATAGGCCTTTGTGATTCGAACTCTCGAACATCATCATCTTGTGTCGATCGGGCGCCCTTTCTCTCTCTTCTACAGCTAGTATAATTATGTAGATGAAGACGCAACTGGTAGTTACATTTCTACACTTTTTGTAGCCCTATGAATGTCCGTTTCTTCCTCTWTTTTTTTGCCCATGTATGTCAAGTTGAGAATGCCTATATCCTAGTATTTATGGGTCGAAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34680</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>772046</contig_pos>
        <strand></strand>
        <context>AATGCCTATA[T/C]CCTAGTATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTCTTCCTCTATTTTTTTGCCCATGTATGTCAAGTTGAGAATGCCTATA</left_flank>
        <right_flank>CCTAGTATTTATGGGTCGAAGGCACAAAAAACGATTTGGAGGCGGAGTCA</right_flank>
        <qual_score>50</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCTCCGTGGATCTGCCAAAACCTTGACAGCCAGAACAAACTAATTTATTATACTTTCTCGATTTAGAAACCCAAGTAGTCTTTTTTTCATAATTTATTTCCCATTTTTCCTCTCGAAAACAGTTCAAAACGATCTCCACCCCACCTGTATTTTAGCTGAAAGTGTACATTACACTGGTCTCTCCTTTTTCTGTGATTCATCTCATTTTTTTTCTTCAGACTCGTCCCGTTGTTCTCAATAAAAAAATTTCTGAATAATTTGCGTTTTTTTCTCGTTTACAAAAAGCCGAAAATGATGAATAGGCCTTTGTGATTCGAACTCTCGAACATCATCATCTTGTGTCGATCGGGCGCCCTTTCTCTCTCTTCTACAGCTAGTATAATTATGTAGATGAAGACGCAACTGGTAGTTACATTTCTACACTTTTTGTAGCCCTATGAATGTCCGTTTCTTCCTCTATTTTTTTGCCCATGTATGTCAAGTTGAGAATGCCTATATCCTAGTATTTATGGGTCGAAGGCACAAAAAACGATTTGGAGGCGGAGTCAATATATATTGGCAAGATGCCAATAGACTTTGCTTCTTCCCGCAAACCAGTAAAACCCATCACGGATCATTGGAGGACACTCCCGACGGTCACTTCTTATTCGCTTTTCACTTTTTTAGTTCTTTCCTCGGTTTTTTATTGTTTCTCCAGAAGTTTAGAATCTCCCCCAATTGTTTCACCTTCAGACAAAGTTTTTTCATACTTCTGAACATAAATCCACTTGGATTGTTTGCTGGTTGTGTCTTGCCCCACGTAACACTAAAGTGTTCATTTACTATTTGGTATTCAAAAGAATACACTCTATTCGCGGCCTTGTTTGAAAGCGTGTGTGATAATGTTGATTGGATTTAATTTATGAATGAAATCGTCACATTTAATCAGAATGCTACTTTATAGTACCTATCAAAAACTTGCTAGATTCAATTCATTACTAGAATTTGAATTCTAGAAG</canonical>
            <polymorphic>CCTCTCCGTGGATCTGCCAAAACCTTGACAGCCAGAACAAACTAATTTATTATACTTTCTCGATTTAGAAACCCAAGTAGTCTTTTTTTCATAATTTATTTCCCATTTTTCCTCTCGAAAACAGTTCAAAACGATCTCCACCCCACCTGTATTTTAGCTGAAAGTGTACATTACACTGGTCTCTCCTTTTTCTGTGATTCATCTCATTTTTTTTCTTCAGACTCGTCCCGTTGTTCTCAATAAAAAAATTTCTGAATAATTTGCGTTTTTTTCTCGTTTACAAAAAGCCGAAAATGATGAATAGGCCTTTGTGATTCGAACTCTCGAACATCATCATCTTGTGTCGATCGGGCGCCCTTTCTCTCTCTTCTACAGCTAGTATAATTATGTAGATGAAGACGCAACTGGTAGTTACATTTCTACACTTTTTGTAGCCCTATGAATGTCCGTTTCTTCCTCTATTTTTTTGCCCATGTATGTCAAGTTGAGAATGCCTATAYCCTAGTATTTATGGGTCGAAGGCACAAAAAACGATTTGGAGGCGGAGTCAATATATATTGGCAAGATGCCAATAGACTTTGCTTCTTCCCGCAAACCAGTAAAACCCATCACGGATCATTGGAGGACACTCCCGACGGTCACTTCTTATTCGCTTTTCACTTTTTTAGTTCTTTCCTCGGTTTTTTATTGTTTCTCCAGAAGTTTAGAATCTCCCCCAATTGTTTCACCTTCAGACAAAGTTTTTTCATACTTCTGAACATAAATCCACTTGGATTGTTTGCTGGTTGTGTCTTGCCCCACGTAACACTAAAGTGTTCATTTACTATTTGGTATTCAAAAGAATACACTCTATTCGCGGCCTTGTTTGAAAGCGTGTGTGATAATGTTGATTGGATTTAATTTATGAATGAAATCGTCACATTTAATCAGAATGCTACTTTATAGTACCTATCAAAAACTTGCTAGATTCAATTCATTACTAGAATTTGAATTCTAGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTACACTTTTTGTAGCCCTATG</pcr_primer_p1>
		<pcr_primer_p2>AAAGTGAAAAGCGAATAAGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TCTACACTTTTTGTAGCCCTATGAATGTCCGTTTCTTCCTCTATTTTTTTGCCCATGTATGTCAAGTTGAGAATGCCTATATCCTAGTATTTATGGGTCGAAGGCACAAAAAACGATTTGGAGGCGGAGTCAATATATATTGGCAAGATGCCAATAGACTTTGCTTCTTCCCGCAAACCAGTAAAACCCATCACGGATCATTGGAGGACACTCCCGACGGTCACTTCTTATTCGCTTTTCACTTT</canonical_amplicon>
		<polymorphic_amplicon>TCTACACTTTTTGTAGCCCTATGAATGTCCGTTTCTTCCTCTATTTTTTTGCCCATGTATGTCAAGTTGAGAATGCCTATAYCCTAGTATTTATGGGTCGAAGGCACAAAAAACGATTTGGAGGCGGAGTCAATATATATTGGCAAGATGCCAATAGACTTTGCTTCTTCCCGCAAACCAGTAAAACCCATCACGGATCATTGGAGGACACTCCCGACGGTCACTTCTTATTCGCTTTTCACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34681</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>772305</contig_pos>
        <strand></strand>
        <context>TACTTCTGAA[C/T]ATAAATCCAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTCCCCCAATTGTTTCACCTTCAGACAAAGTTTTTTCATACTTCTGAA</left_flank>
        <right_flank>ATAAATCCACTTGGATTGTTTGCTGGTTGTGTCTTGCCCCACGTAACACT</right_flank>
        <qual_score>47</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGCGTTTTTTTCTCGTTTACAAAAAGCCGAAAATGATGAATAGGCCTTTGTGATTCGAACTCTCGAACATCATCATCTTGTGTCGATCGGGCGCCCTTTCTCTCTCTTCTACAGCTAGTATAATTATGTAGATGAAGACGCAACTGGTAGTTACATTTCTACACTTTTTGTAGCCCTATGAATGTCCGTTTCTTCCTCTATTTTTTTGCCCATGTATGTCAAGTTGAGAATGCCTATATCCTAGTATTTATGGGTCGAAGGCACAAAAAACGATTTGGAGGCGGAGTCAATATATATTGGCAAGATGCCAATAGACTTTGCTTCTTCCCGCAAACCAGTAAAACCCATCACGGATCATTGGAGGACACTCCCGACGGTCACTTCTTATTCGCTTTTCACTTTTTTAGTTCTTTCCTCGGTTTTTTATTGTTTCTCCAGAAGTTTAGAATCTCCCCCAATTGTTTCACCTTCAGACAAAGTTTTTTCATACTTCTGAACATAAATCCACTTGGATTGTTTGCTGGTTGTGTCTTGCCCCACGTAACACTAAAGTGTTCATTTACTATTTGGTATTCAAAAGAATACACTCTATTCGCGGCCTTGTTTGAAAGCGTGTGTGATAATGTTGATTGGATTTAATTTATGAATGAAATCGTCACATTTAATCAGAATGCTACTTTATAGTACCTATCAAAAACTTGCTAGATTCAATTCATTACTAGAATTTGAATTCTAGAAGGTTTTAATTTTTTTTCTCTCATTTTTTTCCTAGTGAATTTCCCTGTTCTACCTAATGTACCGGCACTCCTGTAGCTTTACCTTGGCTCCACCGCAGAACCTGTAATTGAAGAGCCCCCACACTATCAAATTTGAACTAATTTTTCTTGGTTGTTATCCAAAACTTCAAAAATGTGTCGAATGATAAAATGTTTGTGTCATGATAAACAATTTATCAGTTGACAACTTTTTTAAACCTTCCACTGGAACATAGGAAGATT</canonical>
            <polymorphic>TTTGCGTTTTTTTCTCGTTTACAAAAAGCCGAAAATGATGAATAGGCCTTTGTGATTCGAACTCTCGAACATCATCATCTTGTGTCGATCGGGCGCCCTTTCTCTCTCTTCTACAGCTAGTATAATTATGTAGATGAAGACGCAACTGGTAGTTACATTTCTACACTTTTTGTAGCCCTATGAATGTCCGTTTCTTCCTCTATTTTTTTGCCCATGTATGTCAAGTTGAGAATGCCTATATCCTAGTATTTATGGGTCGAAGGCACAAAAAACGATTTGGAGGCGGAGTCAATATATATTGGCAAGATGCCAATAGACTTTGCTTCTTCCCGCAAACCAGTAAAACCCATCACGGATCATTGGAGGACACTCCCGACGGTCACTTCTTATTCGCTTTTCACTTTTTTAGTTCTTTCCTCGGTTTTTTATTGTTTCTCCAGAAGTTTAGAATCTCCCCCAATTGTTTCACCTTCAGACAAAGTTTTTTCATACTTCTGAAYATAAATCCACTTGGATTGTTTGCTGGTTGTGTCTTGCCCCACGTAACACTAAAGTGTTCATTTACTATTTGGTATTCAAAAGAATACACTCTATTCGCGGCCTTGTTTGAAAGCGTGTGTGATAATGTTGATTGGATTTAATTTATGAATGAAATCGTCACATTTAATCAGAATGCTACTTTATAGTACCTATCAAAAACTTGCTAGATTCAATTCATTACTAGAATTTGAATTCTAGAAGGTTTTAATTTTTTTTCTCTCATTTTTTTCCTAGTGAATTTCCCTGTTCTACCTAATGTACCGGCACTCCTGTAGCTTTACCTTGGCTCCACCGCAGAACCTGTAATTGAAGAGCCCCCACACTATCAAATTTGAACTAATTTTTCTTGGTTGTTATCCAAAACTTCAAAAATGTGTCGAATGATAAAATGTTTGTGTCATGATAAACAATTTATCAGTTGACAACTTTTTTAAACCTTCCACTGGAACATAGGAAGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTATTGTTTCTCCAGAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>TAAATGTGACGATTTCATTCATA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTTTTATTGTTTCTCCAGAAGTTTAGAATCTCCCCCAATTGTTTCACCTTCAGACAAAGTTTTTTCATACTTCTGAACATAAATCCACTTGGATTGTTTGCTGGTTGTGTCTTGCCCCACGTAACACTAAAGTGTTCATTTACTATTTGGTATTCAAAAGAATACACTCTATTCGCGGCCTTGTTTGAAAGCGTGTGTGATAATGTTGATTGGATTTAATTTATGAATGAAATCGTCACATTTA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTATTGTTTCTCCAGAAGTTTAGAATCTCCCCCAATTGTTTCACCTTCAGACAAAGTTTTTTCATACTTCTGAAYATAAATCCACTTGGATTGTTTGCTGGTTGTGTCTTGCCCCACGTAACACTAAAGTGTTCATTTACTATTTGGTATTCAAAAGAATACACTCTATTCGCGGCCTTGTTTGAAAGCGTGTGTGATAATGTTGATTGGATTTAATTTATGAATGAAATCGTCACATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34682</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>800196</contig_pos>
        <strand>+</strand>
        <context>CTGATAGTTA[A/G]CCACATCATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCTCTCCATTCTTCTAGCATCTTGTTCCACTTTCCGCTTCTGATAGTTA</left_flank>
        <right_flank>CCACATCATCAGCTTGTTTTCGAGGAGAATTTTCTTGGAGTATATCCGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACTACTTTCGAAAACGTCATCCTCAAGCTCATTGTTTTCATAATCTTGAGACTTTCTGAAAGAGAAATATATTTGAAGTACAGAATGGATGTTTCACTTCGTTTGATCGCGTTGGCCGTTTTTCATTGGTGTTTTAACATCGATCCACTGCAAAGAATCGCCATTCTGTTCGGAATCGCTGGCGCGGATTCTACAAGTCAATTGACCAGTGGATGACCCATTTATTTTGTGCACAATTTGTTGGAATGTGACAGGGCGAGGTTGTCGTTGAAACGTTGAACTGTTAACGGCGGCGGTTCCATCGTTGTCTGTTTTCGAAGACTTTGACGCTAGACGGTCATCGGTCTCAGCCATGTCAAACTCTCTAGAACTGTTTTATTATTTTCATACTGTTTCATGAAGTACCTCTTCAGAGAAGCCCACGATCGATATCTTTTCTCCACGTGTCTCCTCTCCATTCTTCTAGCATCTTGTTCCACTTTCCGCTTCTGATAGTTAACCACATCATCAGCTTGTTTTCGAGGAGAATTTTCTTGGAGTATATCCGGAACCCTGCAAAAAAAGAATTGTCAAGCAACCAAATAAACAATATCTACCTATACGGTTTAGGATCTCTATAGAGTAGGGTGTCATCCTTTCTTCTTGTGAATCCGTCCGGAAGAGGTGGTTGTGATGAATCGGTGAACGCGTTCCAAAAATCGGCTTGAGAAGTTGCCAATCCACGTTCAAGTATGTTCTTAGAATAGGGACAGTTTGCAAAAACTGGAAGATCGTACATCGACATGGGCGGTGGAATTTTTCTGAGAGATATCAAAGTTTTGATGACAGCATCCTGAAGCTCAATGATTTCTTGTGGACTGAGCTCCTTACTAATATAGAACAAGGTACTGAAAATTAGAGGAGGATGTTAAAGTAATTCTAAACTCAATACCCTTGTTGCTCATCCTCTTCTGGTGGCTGCTTGCGAACTCTAATGCGTTTATTTGCGGCAATGTCGCG</canonical>
            <polymorphic>GACTACTTTCGAAAACGTCATCCTCAAGCTCATTGTTTTCATAATCTTGAGACTTTCTGAAAGAGAAATATATTTGAAGTACAGAATGGATGTTTCACTTCGTTTGATCGCGTTGGCCGTTTTTCATTGGTGTTTTAACATCGATCCACTGCAAAGAATCGCCATTCTGTTCGGAATCGCTGGCGCGGATTCTACAAGTCAATTGACCAGTGGATGACCCATTTATTTTGTGCACAATTTGTTGGAATGTGACAGGGCGAGGTTGTCGTTGAAACGTTGAACTGTTAACGGCGGCGGTTCCATCGTTGTCTGTTTTCGAAGACTTTGACGCTAGACGGTCATCGGTCTCAGCCATGTCAAACTCTCTAGAACTGTTTTATTATTTTCATACTGTTTCATGAAGTACCTCTTCAGAGAAGCCCACGATCGATATCTTTTCTCCACGTGTCTCCTCTCCATTCTTCTAGCATCTTGTTCCACTTTCCGCTTCTGATAGTTARCCACATCATCAGCTTGTTTTCGAGGAGAATTTTCTTGGAGTATATCCGGAACCCTGCAAAAAAAGAATTGTCAAGCAACCAAATAAACAATATCTACCTATACGGTTTAGGATCTCTATAGAGTAGGGTGTCATCCTTTCTTCTTGTGAATCCGTCCGGAAGAGGTGGTTGTGATGAATCGGTGAACGCGTTCCAAAAATCGGCTTGAGAAGTTGCCAATCCACGTTCAAGTATGTTCTTAGAATAGGGACAGTTTGCAAAAACTGGAAGATCGTACATCGACATGGGCGGTGGAATTTTTCTGAGAGATATCAAAGTTTTGATGACAGCATCCTGAAGCTCAATGATTTCTTGTGGACTGAGCTCCTTACTAATATAGAACAAGGTACTGAAAATTAGAGGAGGATGTTAAAGTAATTCTAAACTCAATACCCTTGTTGCTCATCCTCTTCTGGTGGCTGCTTGCGAACTCTAATGCGTTTATTTGCGGCAATGTCGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTTAAC</site>
                <isoschizomers>
                    <enzyme>BstHPI</enzyme>
                    <enzyme>HpaI</enzyme>
                    <enzyme>KspAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 286 212</canonical_bands>
                <polymorphic_bands>714 286</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>502 286 212</canonical_bands>
                <polymorphic_bands>714 286</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>232 212 186 172 144 54</canonical_bands>
                <polymorphic_bands>398 232 172 144 54</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>412 212 150 135 91</canonical_bands>
                <polymorphic_bands>624 150 135 91</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATGAAGTACCTCTTCAGAGAA</pcr_primer_p1>
		<pcr_primer_p2>GAAAGGATGACACCCTACTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TCATGAAGTACCTCTTCAGAGAAGCCCACGATCGATATCTTTTCTCCACGTGTCTCCTCTCCATTCTTCTAGCATCTTGTTCCACTTTCCGCTTCTGATAGTTAACCACATCATCAGCTTGTTTTCGAGGAGAATTTTCTTGGAGTATATCCGGAACCCTGCAAAAAAAGAATTGTCAAGCAACCAAATAAACAATATCTACCTATACGGTTTAGGATCTCTATAGAGTAGGGTGTCATCCTTTC</canonical_amplicon>
		<polymorphic_amplicon>TCATGAAGTACCTCTTCAGAGAAGCCCACGATCGATATCTTTTCTCCACGTGTCTCCTCTCCATTCTTCTAGCATCTTGTTCCACTTTCCGCTTCTGATAGTTARCCACATCATCAGCTTGTTTTCGAGGAGAATTTTCTTGGAGTATATCCGGAACCCTGCAAAAAAAGAATTGTCAAGCAACCAAATAAACAATATCTACCTATACGGTTTAGGATCTCTATAGAGTAGGGTGTCATCCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34683</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>825247</contig_pos>
        <strand>+</strand>
        <context>GAGAAAATTG[A/T]ACTTTAGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAAGGAACATGACAATGCTTTATTTTCTATCAGGACCCGAGAAAATTG</left_flank>
        <right_flank>ACTTTAGAAAGCCCAACTCTTCCTAAAGAACTTTCGGAGCACAGATCCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGACGGGCAGTGTTATATTACAGTTTTTCCGGTATAAACCGAATCTAATTGTTTTATGGGGAACATAATTCAACGTTTATGCGATTCGTTCCTAATTCCAACATTTGCTTATGGAAAAGTCAGCATATAACAAGTAGTGATTTTCAAAAGTTTTGATTTTGGGAAAAATATTCAGAAAGTGTTAATATTTTTGTTATATTTGTTGAAAAAACACGTTGCTCCCAAAAACTTAACGGCCCATCTTTTGGGAGATTCAAAAGATTCATGTGGCTCACAAAAATTTTTGAAATTTCAGTACTTTGATATGAAAATTAAAACTTTTGAAATTCACTACTTGTTATATACTGCCCAAAAAACTCAGAAAGTCTAGTTTCGTTGAATTCCAGCTCTTTGAATGCCAATTTTCAAAGCCCTTCTGAATACAGCTGAAAACGCCAAAATTCGGACTGAAAAGGAACATGACAATGCTTTATTTTCTATCAGGACCCGAGAAAATTGTACTTTAGAAAGCCCAACTCTTCCTAAAGAACTTTCGGAGCACAGATCCTGTTCACAAGAAAAGAAAGCAACGATTTCCTCAACTCGGCTCGTTTTCAATTCAAACTATTTTTTTTTTCTGCAAACACAAAAAGGAAATCGAATGCAGAGTTGCTCGAAAATTAATTGAAAAGTCCTATTTACGGGTGAGGGGGCTCTTGTCGTTCATAGAATGCAAAAACCAAGGTTTTTTGCTTTCTAGAAAACAAGCCATCTTAAGAGAATTCTGAAGACGTCAAATTGATAACGGGAGTCTGGCACGCGATTTTGAAAAATATACATTTCAAAACTCACTTTTTCTTGGTGAACATCCAACTGGATCTCTACTTCAAGAATTTTTTTCCGGTAACAAGTCGAAACAACCCGAACGAAATTCAAATTCCGTGCCAACACTCCATTTTTTTCTCGTTCTTCTTCTTTTTCTTCAGAAGACCCTTCTTCCTTTTTTGGGTGCCCCCGGAA</canonical>
            <polymorphic>TAGACGGGCAGTGTTATATTACAGTTTTTCCGGTATAAACCGAATCTAATTGTTTTATGGGGAACATAATTCAACGTTTATGCGATTCGTTCCTAATTCCAACATTTGCTTATGGAAAAGTCAGCATATAACAAGTAGTGATTTTCAAAAGTTTTGATTTTGGGAAAAATATTCAGAAAGTGTTAATATTTTTGTTATATTTGTTGAAAAAACACGTTGCTCCCAAAAACTTAACGGCCCATCTTTTGGGAGATTCAAAAGATTCATGTGGCTCACAAAAATTTTTGAAATTTCAGTACTTTGATATGAAAATTAAAACTTTTGAAATTCACTACTTGTTATATACTGCCCAAAAAACTCAGAAAGTCTAGTTTCGTTGAATTCCAGCTCTTTGAATGCCAATTTTCAAAGCCCTTCTGAATACAGCTGAAAACGCCAAAATTCGGACTGAAAAGGAACATGACAATGCTTTATTTTCTATCAGGACCCGAGAAAATTGWACTTTAGAAAGCCCAACTCTTCCTAAAGAACTTTCGGAGCACAGATCCTGTTCACAAGAAAAGAAAGCAACGATTTCCTCAACTCGGCTCGTTTTCAATTCAAACTATTTTTTTTTTCTGCAAACACAAAAAGGAAATCGAATGCAGAGTTGCTCGAAAATTAATTGAAAAGTCCTATTTACGGGTGAGGGGGCTCTTGTCGTTCATAGAATGCAAAAACCAAGGTTTTTTGCTTTCTAGAAAACAAGCCATCTTAAGAGAATTCTGAAGACGTCAAATTGATAACGGGAGTCTGGCACGCGATTTTGAAAAATATACATTTCAAAACTCACTTTTTCTTGGTGAACATCCAACTGGATCTCTACTTCAAGAATTTTTTTCCGGTAACAAGTCGAAACAACCCGAACGAAATTCAAATTCCGTGCCAACACTCCATTTTTTTCTCGTTCTTCTTCTTTTTCTTCAGAAGACCCTTCTTCCTTTTTTGGGTGCCCCCGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 297 203</canonical_bands>
                <polymorphic_bands>703 297</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>502 295 203</canonical_bands>
                <polymorphic_bands>705 295</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTGAAAAGGAACATGACAAT</pcr_primer_p1>
		<pcr_primer_p2>CCGTAAATAGGACTTTTCAATTA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GACTGAAAAGGAACATGACAATGCTTTATTTTCTATCAGGACCCGAGAAAATTGTACTTTAGAAAGCCCAACTCTTCCTAAAGAACTTTCGGAGCACAGATCCTGTTCACAAGAAAAGAAAGCAACGATTTCCTCAACTCGGCTCGTTTTCAATTCAAACTATTTTTTTTTTCTGCAAACACAAAAAGGAAATCGAATGCAGAGTTGCTCGAAAATTAATTGAAAAGTCCTATTTACGG</canonical_amplicon>
		<polymorphic_amplicon>GACTGAAAAGGAACATGACAATGCTTTATTTTCTATCAGGACCCGAGAAAATTGWACTTTAGAAAGCCCAACTCTTCCTAAAGAACTTTCGGAGCACAGATCCTGTTCACAAGAAAAGAAAGCAACGATTTCCTCAACTCGGCTCGTTTTCAATTCAAACTATTTTTTTTTTCTGCAAACACAAAAAGGAAATCGAATGCAGAGTTGCTCGAAAATTAATTGAAAAGTCCTATTTACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34684</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>830502</contig_pos>
        <strand>+</strand>
        <context>ggccCCTGAG[A/G]CGATGTAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGTGTTCGCTTCAGGATTGACGACTTTAAATACAACTTCGGCCCCTGAG</left_flank>
        <right_flank>CGATGTAAAAATTTTAATCTATACTTTAAAAATAATTGGGAAATGAGATG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTGTTAGATTCGGTAAAATAAATCGTAAGAAGTTATGCTCTTTTTTTCATGAGTTTGGGTCGGACTCCTGGACAAGGAATTGACAAGGGTTCGGAAACAATGATGGAAAAAAAACTAAAACATGTCCCCAGTTTTTCTACTGACATAGTTTTTTGAAACAAATGTGCAATACTGTGCTTTCATTATTATTCTTGGCCGGTTCGGTGAACCCTGTAGTCGAACATTTTTTAAAAGGCGCATCGTCGGTCCTGGAACGAAAACAGGGACATTTTTTGAATAAATGAATGCACTTCCGATACCGTATCACAAAATTAATTTACTTTGACCGACTTTTGTCAGTTTTTCTACTTTATATTAAAAATCAGCCGATCATTTTTAATAATCCATATAATTTCGATACAGTATCGAAGGCGCATTTTTTCAGATTTTTTATCTGACAAATTTTCATTGTGTTCGCTTCAGGATTGACGACTTTAAATACAACTTCGGCCCCTGAGGCGATGTAAAAATTTTAATCTATACTTTAAAAATAATTGGGAAATGAGATGGAGGCCTAATTAAGCTATGATATCGTTCATATTTTTGGTTGGTTTAGAAAAAAATCAAAGAGGAACGAAATCTTCGAATTACTGTCTCCATTTTTCATTCTAAACAATATACAGTAACCTTATGAATCATTTTCAGCTATATTTACAGACAAGTAGATCTAATAGCTGGAATTTCGTTTTTCTCTGGTTTGAGTACAAGGAAAAGCCCGGCGACACATCGTAAACTGCTTGTCGAATCTTTAACAGCTGGTGCCACATAAATGAAATGTCGTTCTTTTCTACTTTCTGTCTCTTTTCCCTCAATTTCGCTTCCGACAAAATCTGAGAATTGTTCGCAAAAAAAACTTGAAACAGGTGTCTTTCCCGTCGATCATTAGTTTATTTCTAATCCGTTCCCTTTGCTCCTATCTGCCTGTTGCTCGCCAGATCTTTTCTCTGCGTCTCCTTCTC</canonical>
            <polymorphic>TATTGTTAGATTCGGTAAAATAAATCGTAAGAAGTTATGCTCTTTTTTTCATGAGTTTGGGTCGGACTCCTGGACAAGGAATTGACAAGGGTTCGGAAACAATGATGGAAAAAAAACTAAAACATGTCCCCAGTTTTTCTACTGACATAGTTTTTTGAAACAAATGTGCAATACTGTGCTTTCATTATTATTCTTGGCCGGTTCGGTGAACCCTGTAGTCGAACATTTTTTAAAAGGCGCATCGTCGGTCCTGGAACGAAAACAGGGACATTTTTTGAATAAATGAATGCACTTCCGATACCGTATCACAAAATTAATTTACTTTGACCGACTTTTGTCAGTTTTTCTACTTTATATTAAAAATCAGCCGATCATTTTTAATAATCCATATAATTTCGATACAGTATCGAAGGCGCATTTTTTCAGATTTTTTATCTGACAAATTTTCATTGTGTTCGCTTCAGGATTGACGACTTTAAATACAACTTCGGCCCCTGAGRCGATGTAAAAATTTTAATCTATACTTTAAAAATAATTGGGAAATGAGATGGAGGCCTAATTAAGCTATGATATCGTTCATATTTTTGGTTGGTTTAGAAAAAAATCAAAGAGGAACGAAATCTTCGAATTACTGTCTCCATTTTTCATTCTAAACAATATACAGTAACCTTATGAATCATTTTCAGCTATATTTACAGACAAGTAGATCTAATAGCTGGAATTTCGTTTTTCTCTGGTTTGAGTACAAGGAAAAGCCCGGCGACACATCGTAAACTGCTTGTCGAATCTTTAACAGCTGGTGCCACATAAATGAAATGTCGTTCTTTTCTACTTTCTGTCTCTTTTCCCTCAATTTCGCTTCCGACAAAATCTGAGAATTGTTCGCAAAAAAAACTTGAAACAGGTGTCTTTCCCGTCGATCATTAGTTTATTTCTAATCCGTTCCCTTTGCTCCTATCTGCCTGTTGCTCGCCAGATCTTTTCTCTGCGTCTCCTTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCTNAGG</site>
                <isoschizomers>
                    <enzyme>AocI</enzyme>
                    <enzyme>AxyI</enzyme>
                    <enzyme>Bse21I</enzyme>
                    <enzyme>Bsu36I</enzyme>
                    <enzyme>CvnI</enzyme>
                    <enzyme>Eco81I</enzyme>
                    <enzyme>SauI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCCNNNNNGGC</site>
                <isoschizomers>
                    <enzyme>BglI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCAATACTGTGCTTTCATTAT</pcr_primer_p1>
		<pcr_primer_p2>TCCATCTCATTTCCCAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>386</pcr_amplicon_size>
		<canonical_amplicon>TGCAATACTGTGCTTTCATTATTATTCTTGGCCGGTTCGGTGAACCCTGTAGTCGAACATTTTTTAAAAGGCGCATCGTCGGTCCTGGAACGAAAACAGGGACATTTTTTGAATAAATGAATGCACTTCCGATACCGTATCACAAAATTAATTTACTTTGACCGACTTTTGTCAGTTTTTCTACTTTATATTAAAAATCAGCCGATCATTTTTAATAATCCATATAATTTCGATACAGTATCGAAGGCGCATTTTTTCAGATTTTTTATCTGACAAATTTTCATTGTGTTCGCTTCAGGATTGACGACTTTAAATACAACTTCGGCCCCTGAGGCGATGTAAAAATTTTAATCTATACTTTAAAAATAATTGGGAAATGAGATGGA</canonical_amplicon>
		<polymorphic_amplicon>TGCAATACTGTGCTTTCATTATTATTCTTGGCCGGTTCGGTGAACCCTGTAGTCGAACATTTTTTAAAAGGCGCATCGTCGGTCCTGGAACGAAAACAGGGACATTTTTTGAATAAATGAATGCACTTCCGATACCGTATCACAAAATTAATTTACTTTGACCGACTTTTGTCAGTTTTTCTACTTTATATTAAAAATCAGCCGATCATTTTTAATAATCCATATAATTTCGATACAGTATCGAAGGCGCATTTTTTCAGATTTTTTATCTGACAAATTTTCATTGTGTTCGCTTCAGGATTGACGACTTTAAATACAACTTCGGCCCCTGAGRCGATGTAAAAATTTTAATCTATACTTTAAAAATAATTGGGAAATGAGATGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34685</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>861306</contig_pos>
        <strand>+</strand>
        <context>AGGAAGTAGG[G/T]TAAATTGAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAAAATAAGAAAAAGAAGAAATAAGACACATCCCACAGACAGGAAGTAGG</left_flank>
        <right_flank>TAAATTGAAGGGCTCGATATGGGATGGAAAGGTTATTCCTAAAGAAAGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCGGTGTCGACTGAAGACAATCGAATCGAGGATGAGAGAAATGAACTGTGTGCATGACTTCCAAAAGAACAAAAATCTCGAAACTTTAGTCTGTTGTCTCTGAGAGAATATAAGAAGGGAAACGTGAAGTTTTCTGGTTGCCTCGGGCCATCTTCCAGGCGCACAAACAGACAAAATTCTTGAGCGATCCGCCCGTCCCGAGAAATCTCCTCCGAAAGAAAACTGGACAGACAAGAAGAGCAAAAGCAGAGCAGTGAGGTTTTTTCCAGGTTATTAGTGTATATATGGTGTGTGAAGAGATGTGGTGAGTGGGTCCGCCTATGTATGTGCGAGTGGGTGCTCCTCGGGTAGATGTCGGAGAAGGATGGGTCTTCTGAAGCCAGCAGCAGCACAAGTTCATCAAGAATGAAAGAAAATGAAAAATGAGAAAAAATGGGCAAGGGAGGAATAAAATAAGAAAAAGAAGAAATAAGACACATCCCACAGACAGGAAGTAGGTTAAATTGAAGGGCTCGATATGGGATGGAAAGGTTATTCCTAAAGAAAGATACAGAGAAAAGTGGGAATCTCCAGGATTACGGTACTTTTTCAGTTCCTCGAACTCTCTGGTATTTTTTAAGTTTTTCTCGGACAGACCAGCAACGTCCTCAGAGATGATCAGATTTCGGAATTCCTAAAATTCCGACCATTTTCTGAAATATTCTGATCGGAATATTTCCGGTTTTTTTCTCGGAATTGGAGCTTTATGGACTACGGTATTACAAAGACGCAGGAAAAAATCTCTGTGTGGGTCTCGAGTGTAATAACCGTAAACACTAATAAAAGGGCATTCGAACCGCCAACTTCGAGTCAATTTTTCTCAGTTGCTGTCAAAGATAGGAAGACATTGTAAACGGATAAAATGTTCGTCATAATATCAAAACCATTTTATCAGTTTGCTAGTTTTTGATATCTTTTTCAGGAATCGAGATGTATGGGCTCAAAGGTAATGGTTCGGGT</canonical>
            <polymorphic>CCCGGTGTCGACTGAAGACAATCGAATCGAGGATGAGAGAAATGAACTGTGTGCATGACTTCCAAAAGAACAAAAATCTCGAAACTTTAGTCTGTTGTCTCTGAGAGAATATAAGAAGGGAAACGTGAAGTTTTCTGGTTGCCTCGGGCCATCTTCCAGGCGCACAAACAGACAAAATTCTTGAGCGATCCGCCCGTCCCGAGAAATCTCCTCCGAAAGAAAACTGGACAGACAAGAAGAGCAAAAGCAGAGCAGTGAGGTTTTTTCCAGGTTATTAGTGTATATATGGTGTGTGAAGAGATGTGGTGAGTGGGTCCGCCTATGTATGTGCGAGTGGGTGCTCCTCGGGTAGATGTCGGAGAAGGATGGGTCTTCTGAAGCCAGCAGCAGCACAAGTTCATCAAGAATGAAAGAAAATGAAAAATGAGAAAAAATGGGCAAGGGAGGAATAAAATAAGAAAAAGAAGAAATAAGACACATCCCACAGACAGGAAGTAGGKTAAATTGAAGGGCTCGATATGGGATGGAAAGGTTATTCCTAAAGAAAGATACAGAGAAAAGTGGGAATCTCCAGGATTACGGTACTTTTTCAGTTCCTCGAACTCTCTGGTATTTTTTAAGTTTTTCTCGGACAGACCAGCAACGTCCTCAGAGATGATCAGATTTCGGAATTCCTAAAATTCCGACCATTTTCTGAAATATTCTGATCGGAATATTTCCGGTTTTTTTCTCGGAATTGGAGCTTTATGGACTACGGTATTACAAAGACGCAGGAAAAAATCTCTGTGTGGGTCTCGAGTGTAATAACCGTAAACACTAATAAAAGGGCATTCGAACCGCCAACTTCGAGTCAATTTTTCTCAGTTGCTGTCAAAGATAGGAAGACATTGTAAACGGATAAAATGTTCGTCATAATATCAAAACCATTTTATCAGTTTGCTAGTTTTTGATATCTTTTTCAGGAATCGAGATGTATGGGCTCAAAGGTAATGGTTCGGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>500 383 117</canonical_bands>
                <polymorphic_bands>617 383</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAGTTCATCAAGAATGAAAGA</pcr_primer_p1>
		<pcr_primer_p2>GTCTGTCCGAGAAAAACTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACAAGTTCATCAAGAATGAAAGAAAATGAAAAATGAGAAAAAATGGGCAAGGGAGGAATAAAATAAGAAAAAGAAGAAATAAGACACATCCCACAGACAGGAAGTAGGTTAAATTGAAGGGCTCGATATGGGATGGAAAGGTTATTCCTAAAGAAAGATACAGAGAAAAGTGGGAATCTCCAGGATTACGGTACTTTTTCAGTTCCTCGAACTCTCTGGTATTTTTTAAGTTTTTCTCGGACAGAC</canonical_amplicon>
		<polymorphic_amplicon>ACAAGTTCATCAAGAATGAAAGAAAATGAAAAATGAGAAAAAATGGGCAAGGGAGGAATAAAATAAGAAAAAGAAGAAATAAGACACATCCCACAGACAGGAAGTAGGKTAAATTGAAGGGCTCGATATGGGATGGAAAGGTTATTCCTAAAGAAAGATACAGAGAAAAGTGGGAATCTCCAGGATTACGGTACTTTTTCAGTTCCTCGAACTCTCTGGTATTTTTTAAGTTTTTCTCGGACAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34686</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>861339</contig_pos>
        <strand>+</strand>
        <context>GATGGAAAGG[G/T]TATTCCTAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CACAGACAGGAAGTAGGTTAAATTGAAGGGCTCGATATGGGATGGAAAGG</left_flank>
        <right_flank>TATTCCTAAAGAAAGATACAGAGAAAAGTGGGAATCTCCAGGATTACGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGAGAAATGAACTGTGTGCATGACTTCCAAAAGAACAAAAATCTCGAAACTTTAGTCTGTTGTCTCTGAGAGAATATAAGAAGGGAAACGTGAAGTTTTCTGGTTGCCTCGGGCCATCTTCCAGGCGCACAAACAGACAAAATTCTTGAGCGATCCGCCCGTCCCGAGAAATCTCCTCCGAAAGAAAACTGGACAGACAAGAAGAGCAAAAGCAGAGCAGTGAGGTTTTTTCCAGGTTATTAGTGTATATATGGTGTGTGAAGAGATGTGGTGAGTGGGTCCGCCTATGTATGTGCGAGTGGGTGCTCCTCGGGTAGATGTCGGAGAAGGATGGGTCTTCTGAAGCCAGCAGCAGCACAAGTTCATCAAGAATGAAAGAAAATGAAAAATGAGAAAAAATGGGCAAGGGAGGAATAAAATAAGAAAAAGAAGAAATAAGACACATCCCACAGACAGGAAGTAGGTTAAATTGAAGGGCTCGATATGGGATGGAAAGGTTATTCCTAAAGAAAGATACAGAGAAAAGTGGGAATCTCCAGGATTACGGTACTTTTTCAGTTCCTCGAACTCTCTGGTATTTTTTAAGTTTTTCTCGGACAGACCAGCAACGTCCTCAGAGATGATCAGATTTCGGAATTCCTAAAATTCCGACCATTTTCTGAAATATTCTGATCGGAATATTTCCGGTTTTTTTCTCGGAATTGGAGCTTTATGGACTACGGTATTACAAAGACGCAGGAAAAAATCTCTGTGTGGGTCTCGAGTGTAATAACCGTAAACACTAATAAAAGGGCATTCGAACCGCCAACTTCGAGTCAATTTTTCTCAGTTGCTGTCAAAGATAGGAAGACATTGTAAACGGATAAAATGTTCGTCATAATATCAAAACCATTTTATCAGTTTGCTAGTTTTTGATATCTTTTTCAGGAATCGAGATGTATGGGCTCAAAGGTAATGGTTCGGGTGGCCTTCTATTAGAGTGTTTACGGTAAATTAAT</canonical>
            <polymorphic>TGAGAGAAATGAACTGTGTGCATGACTTCCAAAAGAACAAAAATCTCGAAACTTTAGTCTGTTGTCTCTGAGAGAATATAAGAAGGGAAACGTGAAGTTTTCTGGTTGCCTCGGGCCATCTTCCAGGCGCACAAACAGACAAAATTCTTGAGCGATCCGCCCGTCCCGAGAAATCTCCTCCGAAAGAAAACTGGACAGACAAGAAGAGCAAAAGCAGAGCAGTGAGGTTTTTTCCAGGTTATTAGTGTATATATGGTGTGTGAAGAGATGTGGTGAGTGGGTCCGCCTATGTATGTGCGAGTGGGTGCTCCTCGGGTAGATGTCGGAGAAGGATGGGTCTTCTGAAGCCAGCAGCAGCACAAGTTCATCAAGAATGAAAGAAAATGAAAAATGAGAAAAAATGGGCAAGGGAGGAATAAAATAAGAAAAAGAAGAAATAAGACACATCCCACAGACAGGAAGTAGGTTAAATTGAAGGGCTCGATATGGGATGGAAAGGKTATTCCTAAAGAAAGATACAGAGAAAAGTGGGAATCTCCAGGATTACGGTACTTTTTCAGTTCCTCGAACTCTCTGGTATTTTTTAAGTTTTTCTCGGACAGACCAGCAACGTCCTCAGAGATGATCAGATTTCGGAATTCCTAAAATTCCGACCATTTTCTGAAATATTCTGATCGGAATATTTCCGGTTTTTTTCTCGGAATTGGAGCTTTATGGACTACGGTATTACAAAGACGCAGGAAAAAATCTCTGTGTGGGTCTCGAGTGTAATAACCGTAAACACTAATAAAAGGGCATTCGAACCGCCAACTTCGAGTCAATTTTTCTCAGTTGCTGTCAAAGATAGGAAGACATTGTAAACGGATAAAATGTTCGTCATAATATCAAAACCATTTTATCAGTTTGCTAGTTTTTGATATCTTTTTCAGGAATCGAGATGTATGGGCTCAAAGGTAATGGTTCGGGTGGCCTTCTATTAGAGTGTTTACGGTAAATTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAGTTCATCAAGAATGAAAGA</pcr_primer_p1>
		<pcr_primer_p2>GTCTGTCCGAGAAAAACTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACAAGTTCATCAAGAATGAAAGAAAATGAAAAATGAGAAAAAATGGGCAAGGGAGGAATAAAATAAGAAAAAGAAGAAATAAGACACATCCCACAGACAGGAAGTAGGTTAAATTGAAGGGCTCGATATGGGATGGAAAGGTTATTCCTAAAGAAAGATACAGAGAAAAGTGGGAATCTCCAGGATTACGGTACTTTTTCAGTTCCTCGAACTCTCTGGTATTTTTTAAGTTTTTCTCGGACAGAC</canonical_amplicon>
		<polymorphic_amplicon>ACAAGTTCATCAAGAATGAAAGAAAATGAAAAATGAGAAAAAATGGGCAAGGGAGGAATAAAATAAGAAAAAGAAGAAATAAGACACATCCCACAGACAGGAAGTAGGTTAAATTGAAGGGCTCGATATGGGATGGAAAGGKTATTCCTAAAGAAAGATACAGAGAAAAGTGGGAATCTCCAGGATTACGGTACTTTTTCAGTTCCTCGAACTCTCTGGTATTTTTTAAGTTTTTCTCGGACAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34687</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>864845</contig_pos>
        <strand>+</strand>
        <context>TTAAAAATTC[A/G]AAAAAAAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCTCTAATTTCGAAAGATTTTCGAAAAATCACTAAGTATTTAAAAATTC</left_flank>
        <right_flank>AAAAAAAAGAGACCTACAGTACCAATATTCAAAACTTTCAACTAGGACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCTAATGAAATTAACAAATCTTGTACAAGTTATCTGATAAACGACTTGTGATATTTAAAATAATGAAAAAACAAACCTAACAGAAATTACAGCCGCATACCGTATTCCTCTAATAGAAGCCACACAGACGATCAACTTTGAACTCAATTATCTCGATTCCTGTAAAAGATATCAAAACTTTGCCAACTGATAAAATAATGGGGACATTATGATAAACATTTTATCAGTTGACAAGTTATTGATATCTTTTACAGAAATTGAGATAATTGGGCTTAAAGTCAATGGTTTAGGATGGCTTCTATTACAGGAAGCATGGTAAATGGAATTTGAAAAAAAATTGTAATCGGAGAAAAAAAAAATCGTAAACCGCAAAGCATTTTTTCATTGGAAAACAACATTAATTACCCATTTTTTTACAAATTCACATACTTCGGAAATTACCGAATATCCTCTAATTTCGAAAGATTTTCGAAAAATCACTAAGTATTTAAAAATTCAAAAAAAAAGAGACCTACAGTACCAATATTCAAAACTTTCAACTAGGACTTTTATCACTTTTCTAAAAGCCTCTAAAACTGTCTTCCGTTTCGAAAAAAAAGTCAAACCATTATTATTCCTAGGTCGAAGCCTCCTCCTTCCACCACGTCTTCCAGGTCGCATCTCCGGTAACGTCTCCGTCCTTCGAAGCCCATTTGAATCTTTTCCATCTTCTTTCATACTCTGCCATCTTACAACTGGACGACGTACTCGTTCTTCGTACAGATCATCCAGTGGCTCCGGAGAGCTCTCCGTCATTTCTAAACTGTCAGATAAAAAAGGATTCGGATAATTTGGAAGTTGATAAGATATTCAAGAGTATGAGAAAGAGAATGAAAATCAAAAAAATTTTAAAATGGTTTCGTCATCATAGTTGACGACAAGAAATTCTCCTGCGGCTGGCCGTAGGGATAGGGAGGTACACGGGTATCTGTCTCGATTCCTCTGTCTCTGAGCTCTCT</canonical>
            <polymorphic>AATCTAATGAAATTAACAAATCTTGTACAAGTTATCTGATAAACGACTTGTGATATTTAAAATAATGAAAAAACAAACCTAACAGAAATTACAGCCGCATACCGTATTCCTCTAATAGAAGCCACACAGACGATCAACTTTGAACTCAATTATCTCGATTCCTGTAAAAGATATCAAAACTTTGCCAACTGATAAAATAATGGGGACATTATGATAAACATTTTATCAGTTGACAAGTTATTGATATCTTTTACAGAAATTGAGATAATTGGGCTTAAAGTCAATGGTTTAGGATGGCTTCTATTACAGGAAGCATGGTAAATGGAATTTGAAAAAAAATTGTAATCGGAGAAAAAAAAAATCGTAAACCGCAAAGCATTTTTTCATTGGAAAACAACATTAATTACCCATTTTTTTACAAATTCACATACTTCGGAAATTACCGAATATCCTCTAATTTCGAAAGATTTTCGAAAAATCACTAAGTATTTAAAAATTCRAAAAAAAAGAGACCTACAGTACCAATATTCAAAACTTTCAACTAGGACTTTTATCACTTTTCTAAAAGCCTCTAAAACTGTCTTCCGTTTCGAAAAAAAAGTCAAACCATTATTATTCCTAGGTCGAAGCCTCCTCCTTCCACCACGTCTTCCAGGTCGCATCTCCGGTAACGTCTCCGTCCTTCGAAGCCCATTTGAATCTTTTCCATCTTCTTTCATACTCTGCCATCTTACAACTGGACGACGTACTCGTTCTTCGTACAGATCATCCAGTGGCTCCGGAGAGCTCTCCGTCATTTCTAAACTGTCAGATAAAAAAGGATTCGGATAATTTGGAAGTTGATAAGATATTCAAGAGTATGAGAAAGAGAATGAAAATCAAAAAAATTTTAAAATGGTTTCGTCATCATAGTTGACGACAAGAAATTCTCCTGCGGCTGGCCGTAGGGATAGGGAGGTACACGGGTATCTGTCTCGATTCCTCTGTCTCTGAGCTCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTGTAATCGGAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAGACAGTTTTAGAGGCTTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTGTAATCGGAGAAAAAAAAAATCGTAAACCGCAAAGCATTTTTTCATTGGAAAACAACATTAATTACCCATTTTTTTACAAATTCACATACTTCGGAAATTACCGAATATCCTCTAATTTCGAAAGATTTTCGAAAAATCACTAAGTATTTAAAAATTCAAAAAAAAAGAGACCTACAGTACCAATATTCAAAACTTTCAACTAGGACTTTTATCACTTTTCTAAAAGCCTCTAAAACTGTCTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTGTAATCGGAGAAAAAAAAAATCGTAAACCGCAAAGCATTTTTTCATTGGAAAACAACATTAATTACCCATTTTTTTACAAATTCACATACTTCGGAAATTACCGAATATCCTCTAATTTCGAAAGATTTTCGAAAAATCACTAAGTATTTAAAAATTCRAAAAAAAAGAGACCTACAGTACCAATATTCAAAACTTTCAACTAGGACTTTTATCACTTTTCTAAAAGCCTCTAAAACTGTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34688</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>892257</contig_pos>
        <strand>+</strand>
        <context>AGCATTCCAT[A/G]GAGAAGACTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTGAGAAAGCAGTGCAAATCCTAATGCTGCATTCAAAGAGCATTCCAT</left_flank>
        <right_flank>GAGAAGACTCTAATTGCAATCACATACATACTACTCTCAACCGCCCGTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTCCCCCTCTTTTTTTTTGTAAAATTAGCAATCCGTTGTTGTACAATCTTTTCCGGTTCTTCTTATCTCCTTTCTCCCACATTTGCCATGATCGGTTTTTCGATGCATTTTCTATACCGTCTCTTTCCTCTACAAAAGTTCTAGAATTTATTTGTGAATTGAATCTCTCCTCATGCATTCAGGTGGCGAAGTGTTCACCCGATAGTTTTTATTTTAAAGTTTCATTTTTCTACTATTTGCAAATAAAGATTGTGTTGCTTCAATACTAGTAGAAACCAGAAAAAGTATCAAAAAGAAGAAGAAGGTCGATAACACTCAGGGGACCCGAAAAGCCACAGATAGCAAAATCATGATTTATGAGGGTCCGGAAAAGGAAAAGAAACCGACTAGTAGTAGGGGGACTCTTGAAACTTTTGTTTTTCGAGAAGGTCACATTTGACAAAATAACTTTGAGAAAGCAGTGCAAATCCTAATGCTGCATTCAAAGAGCATTCCATAGAGAAGACTCTAATTGCAATCACATACATACTACTCTCAACCGCCCGTCTGTCATCTAATCCGCTTTCTCTTGAAGTGCTCCCCCATCCGTTCGCCTGATTGCGCCACTAATTCGTTGCATAGACGTTCGTCTAGTTACTACGAGAATATGGAAGAAGGAGAAGAAGTGGAAGATTGAAGAGAAAGTAGTTGTCGATTGAATTTGAGAGACGATAAAATTAAGCTAACTTCGTTTTCTGGGATTTTCTTAGCGAAATTTCCACACATTCCCGTTCGAAATTGTGAACAATGCATAGGGAATAGGATGGATCTTGCCTGAAATTCAATGAAACAGATAGACGCAAGTTTGAAGCTTTAAAAATTTAATCTTAAAAATACTTTTCACTTTTAGTAAACTATAAAATTTACTTGAATTTAAGATTACTTGAATCTTTAAGATCAAACTTAAAATAATTATACACTGACCATGGATTGTTTTTGATAAACTTCCGGCATAATTT</canonical>
            <polymorphic>ATCTCCCCCTCTTTTTTTTTGTAAAATTAGCAATCCGTTGTTGTACAATCTTTTCCGGTTCTTCTTATCTCCTTTCTCCCACATTTGCCATGATCGGTTTTTCGATGCATTTTCTATACCGTCTCTTTCCTCTACAAAAGTTCTAGAATTTATTTGTGAATTGAATCTCTCCTCATGCATTCAGGTGGCGAAGTGTTCACCCGATAGTTTTTATTTTAAAGTTTCATTTTTCTACTATTTGCAAATAAAGATTGTGTTGCTTCAATACTAGTAGAAACCAGAAAAAGTATCAAAAAGAAGAAGAAGGTCGATAACACTCAGGGGACCCGAAAAGCCACAGATAGCAAAATCATGATTTATGAGGGTCCGGAAAAGGAAAAGAAACCGACTAGTAGTAGGGGGACTCTTGAAACTTTTGTTTTTCGAGAAGGTCACATTTGACAAAATAACTTTGAGAAAGCAGTGCAAATCCTAATGCTGCATTCAAAGAGCATTCCATRGAGAAGACTCTAATTGCAATCACATACATACTACTCTCAACCGCCCGTCTGTCATCTAATCCGCTTTCTCTTGAAGTGCTCCCCCATCCGTTCGCCTGATTGCGCCACTAATTCGTTGCATAGACGTTCGTCTAGTTACTACGAGAATATGGAAGAAGGAGAAGAAGTGGAAGATTGAAGAGAAAGTAGTTGTCGATTGAATTTGAGAGACGATAAAATTAAGCTAACTTCGTTTTCTGGGATTTTCTTAGCGAAATTTCCACACATTCCCGTTCGAAATTGTGAACAATGCATAGGGAATAGGATGGATCTTGCCTGAAATTCAATGAAACAGATAGACGCAAGTTTGAAGCTTTAAAAATTTAATCTTAAAAATACTTTTCACTTTTAGTAAACTATAAAATTTACTTGAATTTAAGATTACTTGAATCTTTAAGATCAAACTTAAAATAATTATACACTGACCATGGATTGTTTTTGATAAACTTCCGGCATAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGGTCACATTTGACAAAATA</pcr_primer_p1>
		<pcr_primer_p2>CTTCTTCTCCTTCTTCCATATTC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AGAAGGTCACATTTGACAAAATAACTTTGAGAAAGCAGTGCAAATCCTAATGCTGCATTCAAAGAGCATTCCATAGAGAAGACTCTAATTGCAATCACATACATACTACTCTCAACCGCCCGTCTGTCATCTAATCCGCTTTCTCTTGAAGTGCTCCCCCATCCGTTCGCCTGATTGCGCCACTAATTCGTTGCATAGACGTTCGTCTAGTTACTACGAGAATATGGAAGAAGGAGAAGAAG</canonical_amplicon>
		<polymorphic_amplicon>AGAAGGTCACATTTGACAAAATAACTTTGAGAAAGCAGTGCAAATCCTAATGCTGCATTCAAAGAGCATTCCATRGAGAAGACTCTAATTGCAATCACATACATACTACTCTCAACCGCCCGTCTGTCATCTAATCCGCTTTCTCTTGAAGTGCTCCCCCATCCGTTCGCCTGATTGCGCCACTAATTCGTTGCATAGACGTTCGTCTAGTTACTACGAGAATATGGAAGAAGGAGAAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34689</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>892426</contig_pos>
        <strand>+</strand>
        <context>GAGAAGAAGT[A/G]GAAGATTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATAGACGTTCGTCTAGTTACTACGAGAATATGGAAGAAGGAGAAGAAGT</left_flank>
        <right_flank>GAAGATTGAAGAGAAAGTAGTTGTCGATTGAATTTGAGAGACGATAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTCATGCATTCAGGTGGCGAAGTGTTCACCCGATAGTTTTTATTTTAAAGTTTCATTTTTCTACTATTTGCAAATAAAGATTGTGTTGCTTCAATACTAGTAGAAACCAGAAAAAGTATCAAAAAGAAGAAGAAGGTCGATAACACTCAGGGGACCCGAAAAGCCACAGATAGCAAAATCATGATTTATGAGGGTCCGGAAAAGGAAAAGAAACCGACTAGTAGTAGGGGGACTCTTGAAACTTTTGTTTTTCGAGAAGGTCACATTTGACAAAATAACTTTGAGAAAGCAGTGCAAATCCTAATGCTGCATTCAAAGAGCATTCCATAGAGAAGACTCTAATTGCAATCACATACATACTACTCTCAACCGCCCGTCTGTCATCTAATCCGCTTTCTCTTGAAGTGCTCCCCCATCCGTTCGCCTGATTGCGCCACTAATTCGTTGCATAGACGTTCGTCTAGTTACTACGAGAATATGGAAGAAGGAGAAGAAGTGGAAGATTGAAGAGAAAGTAGTTGTCGATTGAATTTGAGAGACGATAAAATTAAGCTAACTTCGTTTTCTGGGATTTTCTTAGCGAAATTTCCACACATTCCCGTTCGAAATTGTGAACAATGCATAGGGAATAGGATGGATCTTGCCTGAAATTCAATGAAACAGATAGACGCAAGTTTGAAGCTTTAAAAATTTAATCTTAAAAATACTTTTCACTTTTAGTAAACTATAAAATTTACTTGAATTTAAGATTACTTGAATCTTTAAGATCAAACTTAAAATAATTATACACTGACCATGGATTGTTTTTGATAAACTTCCGGCATAATTTCGTTTCCGTCAAATCCGGAAAACGACAAAACTTGAATATTTGGAATCGATGCATTAATTTGGTTAGAGTTCTTCAATGTCTATAACTTTTAATAACTTGGTCATCAGCTGGTAACTTCTGGTCAAAAAGACCGACCCATCGCCTAGAAGTTTCCTCCCGAGAAACTTGT</canonical>
            <polymorphic>TCCTCATGCATTCAGGTGGCGAAGTGTTCACCCGATAGTTTTTATTTTAAAGTTTCATTTTTCTACTATTTGCAAATAAAGATTGTGTTGCTTCAATACTAGTAGAAACCAGAAAAAGTATCAAAAAGAAGAAGAAGGTCGATAACACTCAGGGGACCCGAAAAGCCACAGATAGCAAAATCATGATTTATGAGGGTCCGGAAAAGGAAAAGAAACCGACTAGTAGTAGGGGGACTCTTGAAACTTTTGTTTTTCGAGAAGGTCACATTTGACAAAATAACTTTGAGAAAGCAGTGCAAATCCTAATGCTGCATTCAAAGAGCATTCCATAGAGAAGACTCTAATTGCAATCACATACATACTACTCTCAACCGCCCGTCTGTCATCTAATCCGCTTTCTCTTGAAGTGCTCCCCCATCCGTTCGCCTGATTGCGCCACTAATTCGTTGCATAGACGTTCGTCTAGTTACTACGAGAATATGGAAGAAGGAGAAGAAGTRGAAGATTGAAGAGAAAGTAGTTGTCGATTGAATTTGAGAGACGATAAAATTAAGCTAACTTCGTTTTCTGGGATTTTCTTAGCGAAATTTCCACACATTCCCGTTCGAAATTGTGAACAATGCATAGGGAATAGGATGGATCTTGCCTGAAATTCAATGAAACAGATAGACGCAAGTTTGAAGCTTTAAAAATTTAATCTTAAAAATACTTTTCACTTTTAGTAAACTATAAAATTTACTTGAATTTAAGATTACTTGAATCTTTAAGATCAAACTTAAAATAATTATACACTGACCATGGATTGTTTTTGATAAACTTCCGGCATAATTTCGTTTCCGTCAAATCCGGAAAACGACAAAACTTGAATATTTGGAATCGATGCATTAATTTGGTTAGAGTTCTTCAATGTCTATAACTTTTAATAACTTGGTCATCAGCTGGTAACTTCTGGTCAAAAAGACCGACCCATCGCCTAGAAGTTTCCTCCCGAGAAACTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>209 100 97 93 76 62 60 57 57 56 31 29 21 20 18 8 4 2</canonical_bands>
                <polymorphic_bands>209 155 100 97 76 60 57 57 56 31 29 21 20 18 8 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTCTAATTGCAATCACATACA</pcr_primer_p1>
		<pcr_primer_p2>GCTAAGAAAATCCCAGAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GACTCTAATTGCAATCACATACATACTACTCTCAACCGCCCGTCTGTCATCTAATCCGCTTTCTCTTGAAGTGCTCCCCCATCCGTTCGCCTGATTGCGCCACTAATTCGTTGCATAGACGTTCGTCTAGTTACTACGAGAATATGGAAGAAGGAGAAGAAGTGGAAGATTGAAGAGAAAGTAGTTGTCGATTGAATTTGAGAGACGATAAAATTAAGCTAACTTCGTTTTCTGGGATTTTCTTAGC</canonical_amplicon>
		<polymorphic_amplicon>GACTCTAATTGCAATCACATACATACTACTCTCAACCGCCCGTCTGTCATCTAATCCGCTTTCTCTTGAAGTGCTCCCCCATCCGTTCGCCTGATTGCGCCACTAATTCGTTGCATAGACGTTCGTCTAGTTACTACGAGAATATGGAAGAAGGAGAAGAAGTRGAAGATTGAAGAGAAAGTAGTTGTCGATTGAATTTGAGAGACGATAAAATTAAGCTAACTTCGTTTTCTGGGATTTTCTTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34690</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>922225</contig_pos>
        <strand></strand>
        <context>atttttgaaa[A/T]ttcagtactt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCTTTTGGGAGATTCAAAAGATTCACGTGGCTCACAAAAATTTTTGAAA</left_flank>
        <right_flank>TTCAGTACTTTGATGTGAAAATTAAAACTTTTGAAATTCACTACTTGTTA</right_flank>
        <qual_score>49</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACCGACTTTTGATCAAATGATTCTTGACCTAAACCCAGCAACACGTGGTTTCTATTCAGATGATAGTCTAGACGGATTCTAGAGACCAAGTAATGTACAACCTGTAATAGAACGGTCCACACATTGACAAAAAATTCTTAGAGTACAAGGGGGTTTAAAATAATTTAGTGGCACAAATTTCAGAGTTTTACAGGTATTTTTTTACTTCCGAATTAAAGATTTTGTACCTCTGAATAGCTTTGTACCCCAATGACCCCAAAATTGTTGCACCCTCCGAATTATTGCCCCACGCATTGTCAAGCTTGAGCGAATTTTTCTTGGCTCGCATGCAAGATATAACAAGTAGTGATTTTCAAAAGTTTTAATTTTGGGAAAAATATTCAGAAAGTGTTAATATTTCTGTTATATTTGTTGAAAAAACACGTTGCTCCCAAAAACTTAACGGTCCATCTTTTGGGAGATTCAAAAGATTCACGTGGCTCACAAAAATTTTTGAAAATTCAGTACTTTGATGTGAAAATTAAAACTTTTGAAATTCACTACTTGTTATTTGAAAAATATGTCAACGGATAAAATATTTGTGATATCATGATAAACAATTTCACAGCTTTCAACTTTTTCGTATCTTTCACAGGAACCGAGATAAATTAGTTCAAAGTGAACAGTGAAGGGGTGCCTTTCTATTACAGGTTTTATACTACTTATCTGACGGTTAATATTATTCTGATACAAAAATCGTAGTTGTGGAAGAGAAACGATGGTGGCCGCATCCGAAGGTCCTACAACGACAACTACAGTAACCTAGAATATGTTCACTTTCCGTATTTATTATCTCGATTTTCGTACGTTTTCAGTCAATTTTTTCACGGTCAAAATGTTTCCTTTGCATTGAAAAACGAGAAAATAAATTTGAAAAATAAAAATATTTTTAGGTTACCGTAGTTGCCGTTGGGGGACCTTCGGCCACGGCCACCGACATTTTTCTTCGACAGCTTCAAT</canonical>
            <polymorphic>CACCGACTTTTGATCAAATGATTCTTGACCTAAACCCAGCAACACGTGGTTTCTATTCAGATGATAGTCTAGACGGATTCTAGAGACCAAGTAATGTACAACCTGTAATAGAACGGTCCACACATTGACAAAAAATTCTTAGAGTACAAGGGGGTTTAAAATAATTTAGTGGCACAAATTTCAGAGTTTTACAGGTATTTTTTTACTTCCGAATTAAAGATTTTGTACCTCTGAATAGCTTTGTACCCCAATGACCCCAAAATTGTTGCACCCTCCGAATTATTGCCCCACGCATTGTCAAGCTTGAGCGAATTTTTCTTGGCTCGCATGCAAGATATAACAAGTAGTGATTTTCAAAAGTTTTAATTTTGGGAAAAATATTCAGAAAGTGTTAATATTTCTGTTATATTTGTTGAAAAAACACGTTGCTCCCAAAAACTTAACGGTCCATCTTTTGGGAGATTCAAAAGATTCACGTGGCTCACAAAAATTTTTGAAAWTTCAGTACTTTGATGTGAAAATTAAAACTTTTGAAATTCACTACTTGTTATTTGAAAAATATGTCAACGGATAAAATATTTGTGATATCATGATAAACAATTTCACAGCTTTCAACTTTTTCGTATCTTTCACAGGAACCGAGATAAATTAGTTCAAAGTGAACAGTGAAGGGGTGCCTTTCTATTACAGGTTTTATACTACTTATCTGACGGTTAATATTATTCTGATACAAAAATCGTAGTTGTGGAAGAGAAACGATGGTGGCCGCATCCGAAGGTCCTACAACGACAACTACAGTAACCTAGAATATGTTCACTTTCCGTATTTATTATCTCGATTTTCGTACGTTTTCAGTCAATTTTTTCACGGTCAAAATGTTTCCTTTGCATTGAAAAACGAGAAAATAAATTTGAAAAATAAAAATATTTTTAGGTTACCGTAGTTGCCGTTGGGGGACCTTCGGCCACGGCCACCGACATTTTTCTTCGACAGCTTCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>373 178 134 133 93 43 36 10</canonical_bands>
                <polymorphic_bands>373 178 134 133 93 46 43</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>211 133 124 93 64 54 50 49 48 35 33 29 21 17 15 14 10</canonical_bands>
                <polymorphic_bands>211 133 124 93 64 54 50 49 48 35 33 31 29 17 15 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCTTGAGCGAATTTTTCTT</pcr_primer_p1>
		<pcr_primer_p2>AATTGTTTGGTTCATTTTTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>732</pcr_amplicon_size>
		<canonical_amplicon>AGCTTGAGCGAATTTTTCTTGGCTCGCATGCAAGATATAACAAGTAGTGATTTTCAAAAGTTTTAATTTTGGGAAAAATATTCAGAAAGTGTTAATATTTCTGTTATATTTGTTGAAAAAACACGTTGCTCCCAAAAACTTAACGGTCCATCTTTTGGGAGATTCAAAAGATTCACGTGGCTCACAAAAATTTTTGAAAATTCAGTACTTTGATGTGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AGCTTGAGCGAATTTTTCTTGGCTCGCATGCAAGATATAACAAGTAGTGATTTTCAAAAGTTTTAATTTTGGGAAAAATATTCAGAAAGTGTTAATATTTCTGTTATATTTGTTGAAAAAACACGTTGCTCCCAAAAACTTAACGGTCCATCTTTTGGGAGATTCAAAAGATTCACGTGGCTCACAAAAATTTTTGAAAWTTCAGTACTTTGATGTGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34691</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>922266</contig_pos>
        <strand></strand>
        <context>ttgaaattca[C/G]tacttgttat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTTGAAAATTCAGTACTTTGATGTGAAAATTAAAACTTTTGAAATTCA</left_flank>
        <right_flank>TACTTGTTATTTGAAAAATATGTCAACGGATAAAATATTTGTGATATCAT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACGTGGTTTCTATTCAGATGATAGTCTAGACGGATTCTAGAGACCAAGTAATGTACAACCTGTAATAGAACGGTCCACACATTGACAAAAAATTCTTAGAGTACAAGGGGGTTTAAAATAATTTAGTGGCACAAATTTCAGAGTTTTACAGGTATTTTTTTACTTCCGAATTAAAGATTTTGTACCTCTGAATAGCTTTGTACCCCAATGACCCCAAAATTGTTGCACCCTCCGAATTATTGCCCCACGCATTGTCAAGCTTGAGCGAATTTTTCTTGGCTCGCATGCAAGATATAACAAGTAGTGATTTTCAAAAGTTTTAATTTTGGGAAAAATATTCAGAAAGTGTTAATATTTCTGTTATATTTGTTGAAAAAACACGTTGCTCCCAAAAACTTAACGGTCCATCTTTTGGGAGATTCAAAAGATTCACGTGGCTCACAAAAATTTTTGAAAATTCAGTACTTTGATGTGAAAATTAAAACTTTTGAAATTCACTACTTGTTATTTGAAAAATATGTCAACGGATAAAATATTTGTGATATCATGATAAACAATTTCACAGCTTTCAACTTTTTCGTATCTTTCACAGGAACCGAGATAAATTAGTTCAAAGTGAACAGTGAAGGGGTGCCTTTCTATTACAGGTTTTATACTACTTATCTGACGGTTAATATTATTCTGATACAAAAATCGTAGTTGTGGAAGAGAAACGATGGTGGCCGCATCCGAAGGTCCTACAACGACAACTACAGTAACCTAGAATATGTTCACTTTCCGTATTTATTATCTCGATTTTCGTACGTTTTCAGTCAATTTTTTCACGGTCAAAATGTTTCCTTTGCATTGAAAAACGAGAAAATAAATTTGAAAAATAAAAATATTTTTAGGTTACCGTAGTTGCCGTTGGGGGACCTTCGGCCACGGCCACCGACATTTTTCTTCGACAGCTTCAATTTTTTCGAATTAGAAAAATGAACCAAACAATTGACTTGACC</canonical>
            <polymorphic>ACACGTGGTTTCTATTCAGATGATAGTCTAGACGGATTCTAGAGACCAAGTAATGTACAACCTGTAATAGAACGGTCCACACATTGACAAAAAATTCTTAGAGTACAAGGGGGTTTAAAATAATTTAGTGGCACAAATTTCAGAGTTTTACAGGTATTTTTTTACTTCCGAATTAAAGATTTTGTACCTCTGAATAGCTTTGTACCCCAATGACCCCAAAATTGTTGCACCCTCCGAATTATTGCCCCACGCATTGTCAAGCTTGAGCGAATTTTTCTTGGCTCGCATGCAAGATATAACAAGTAGTGATTTTCAAAAGTTTTAATTTTGGGAAAAATATTCAGAAAGTGTTAATATTTCTGTTATATTTGTTGAAAAAACACGTTGCTCCCAAAAACTTAACGGTCCATCTTTTGGGAGATTCAAAAGATTCACGTGGCTCACAAAAATTTTTGAAAATTCAGTACTTTGATGTGAAAATTAAAACTTTTGAAATTCASTACTTGTTATTTGAAAAATATGTCAACGGATAAAATATTTGTGATATCATGATAAACAATTTCACAGCTTTCAACTTTTTCGTATCTTTCACAGGAACCGAGATAAATTAGTTCAAAGTGAACAGTGAAGGGGTGCCTTTCTATTACAGGTTTTATACTACTTATCTGACGGTTAATATTATTCTGATACAAAAATCGTAGTTGTGGAAGAGAAACGATGGTGGCCGCATCCGAAGGTCCTACAACGACAACTACAGTAACCTAGAATATGTTCACTTTCCGTATTTATTATCTCGATTTTCGTACGTTTTCAGTCAATTTTTTCACGGTCAAAATGTTTCCTTTGCATTGAAAAACGAGAAAATAAATTTGAAAAATAAAAATATTTTTAGGTTACCGTAGTTGCCGTTGGGGGACCTTCGGCCACGGCCACCGACATTTTTCTTCGACAGCTTCAATTTTTTCGAATTAGAAAAATGAACCAAACAATTGACTTGACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>100 96 72 71 68 59 52 52 51 49 44 42 33 32 29 27 23 21 20 17 8 7 6 5 4 4 3 3 2</canonical_bands>
                <polymorphic_bands>100 96 72 71 68 67 59 52 52 51 49 42 33 32 29 27 21 20 17 8 7 6 5 4 4 3 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCTTGAGCGAATTTTTCTT</pcr_primer_p1>
		<pcr_primer_p2>AATTGTTTGGTTCATTTTTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>732</pcr_amplicon_size>
		<canonical_amplicon>AGCTTGAGCGAATTTTTCTTGGCTCGCATGCAAGATATAACAAGTAGTGATTTTCAAAAGTTTTAATTTTGGGAAAAATATTCAGAAAGTGTTAATATTTCTGTTATATTTGTTGAAAAAACACGTTGCTCCCAAAAACTTAACGGTCCATCTTTTGGGAGATTCAAAAGATTCACGTGGCTCACAAAAATTTTTGAAAATTCAGTACTTTGATGTGAAAATTAAAACTTTTGAAATTCACTACTTGTTATTTGAAAAATATGTCAACGGATAAAATATTTGTGATATCATGATAAACAATTTCACAGCTTTCAACTTTTTCGTATCTTTCACAGGAACCGAGATAAATTAGTTCAAAGTGAACAGTGAAGGGGTGCCTTTCTATTACAGGTTTTATACTACTTATCTGACGGTTAATATTATTCTGATACAAAAATCGTAGTTGTGGAAGAGAAACGATGGTGGCCGCATCCGAAGGTCCTACAACGACAACTACAGTAACCTAGAATATGTTCACTTTCCGTATTTATTATCTCGATTTTCGTACGTTTTCAGTCAATTTTTTCACGGTCAAAATGTTTCCTTTGCATTGAAAAACGAGAAAATAAATTTGAAAAATAAAAATATTTTTAGGTTACCGTAGTTGCCGTTGGGGGACCTTCGGCCACGGCCACCGACATTTTTCTTCGACAGCTTCAATTTTTTCGAATTAGAAAAATGAACCAAACAATT</canonical_amplicon>
		<polymorphic_amplicon>AGCTTGAGCGAATTTTTCTTGGCTCGCATGCAAGATATAACAAGTAGTGATTTTCAAAAGTTTTAATTTTGGGAAAAATATTCAGAAAGTGTTAATATTTCTGTTATATTTGTTGAAAAAACACGTTGCTCCCAAAAACTTAACGGTCCATCTTTTGGGAGATTCAAAAGATTCACGTGGCTCACAAAAATTTTTGAAAATTCAGTACTTTGATGTGAAAATTAAAACTTTTGAAATTCASTACTTGTTATTTGAAAAATATGTCAACGGATAAAATATTTGTGATATCATGATAAACAATTTCACAGCTTTCAACTTTTTCGTATCTTTCACAGGAACCGAGATAAATTAGTTCAAAGTGAACAGTGAAGGGGTGCCTTTCTATTACAGGTTTTATACTACTTATCTGACGGTTAATATTATTCTGATACAAAAATCGTAGTTGTGGAAGAGAAACGATGGTGGCCGCATCCGAAGGTCCTACAACGACAACTACAGTAACCTAGAATATGTTCACTTTCCGTATTTATTATCTCGATTTTCGTACGTTTTCAGTCAATTTTTTCACGGTCAAAATGTTTCCTTTGCATTGAAAAACGAGAAAATAAATTTGAAAAATAAAAATATTTTTAGGTTACCGTAGTTGCCGTTGGGGGACCTTCGGCCACGGCCACCGACATTTTTCTTCGACAGCTTCAATTTTTTCGAATTAGAAAAATGAACCAAACAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34692</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>928681</contig_pos>
        <strand></strand>
        <context>agatatcaag[G/A]ttttgtcaac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AACCATCAAATTTGAGCTCAATTATCTCCATTACTGTGAAAGATATCAAG</left_flank>
        <right_flank>TTTTGTCAACCGGTAAAATATTGGTGATATTGTGATAAGTAATTTATCAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAGAAGAAAAATTCTATAGAACTACTTATATAGTTCAAATAAGTCAAGTTGGAGTGGCTTAAAAATGGTTATACCGTATTTCCTCTAATAGAAGCTCATCCAAACCGTATACTTTAAGTTCATTTATCTCGATTTCTTTGACAGGTATCAAAAACTTGTCAACAGATAAATTATTAATCATAATATCACCAATGTTATATTAGTTGACTCTTTTTCGATATCTCTTGCAGGAATCGAGATAATTGAGCTCAAAGAAGACGATTTGGGTGGGCTTCTACAAGAGGAAATACGGTATTTTTTGGGAAGACGATTCAAATAATGAGATTTTGGTGAATCATCAGAAAACGCCTTGACTGTTTTTTTTTCAATATTTGATATTCGAAATACAAAAAACTGGTATCAAAATGTATCGACCTACCGTATTTCTTCTACTTGGAAGCTCACCCAAACCATCAAATTTGAGCTCAATTATCTCCATTACTGTGAAAGATATCAAGGTTTTGTCAACCGGTAAAATATTGGTGATATTGTGATAAGTAATTTATCAGTTGACAAAATTTTGATATCTTTGACAAGAATCGAGATAAGTAGGCTCAAAGTTGACGGTTTGAGTGGGCTTCTACAAGAGGAAATACGGTGCATGAAGAGCCCCCATTTCGTATTTGAATACTTTTTCGTGCAAAATGTAGAAATTGAGGAGTTATCGACTTCATCTATCCAGTGTTAACTTTCAACTCCGTAGAATCTCCTCTTCGACACTAAACGTCCCGTCTAAGCTTAAGCGAGTACGGAACCATATCCCTATTTTTCGAAATTTTTTCAAGTCGTTTCTCTCTCATTACAGATACCTAAGCTTGAAAAATTTTAAAGGAAAAAAACTACTTTATCACATTCTGAGCGATCCCCACTGCGTACCGTATTTCTGTAGTTGTTACAAAAAATTGAGAAAACTTGAACTCTGCTCAGCTTCAGGATGAACCCGTTCCTATTTTATATGT</canonical>
            <polymorphic>TATAGAAGAAAAATTCTATAGAACTACTTATATAGTTCAAATAAGTCAAGTTGGAGTGGCTTAAAAATGGTTATACCGTATTTCCTCTAATAGAAGCTCATCCAAACCGTATACTTTAAGTTCATTTATCTCGATTTCTTTGACAGGTATCAAAAACTTGTCAACAGATAAATTATTAATCATAATATCACCAATGTTATATTAGTTGACTCTTTTTCGATATCTCTTGCAGGAATCGAGATAATTGAGCTCAAAGAAGACGATTTGGGTGGGCTTCTACAAGAGGAAATACGGTATTTTTTGGGAAGACGATTCAAATAATGAGATTTTGGTGAATCATCAGAAAACGCCTTGACTGTTTTTTTTTCAATATTTGATATTCGAAATACAAAAAACTGGTATCAAAATGTATCGACCTACCGTATTTCTTCTACTTGGAAGCTCACCCAAACCATCAAATTTGAGCTCAATTATCTCCATTACTGTGAAAGATATCAAGRTTTTGTCAACCGGTAAAATATTGGTGATATTGTGATAAGTAATTTATCAGTTGACAAAATTTTGATATCTTTGACAAGAATCGAGATAAGTAGGCTCAAAGTTGACGGTTTGAGTGGGCTTCTACAAGAGGAAATACGGTGCATGAAGAGCCCCCATTTCGTATTTGAATACTTTTTCGTGCAAAATGTAGAAATTGAGGAGTTATCGACTTCATCTATCCAGTGTTAACTTTCAACTCCGTAGAATCTCCTCTTCGACACTAAACGTCCCGTCTAAGCTTAAGCGAGTACGGAACCATATCCCTATTTTTCGAAATTTTTTCAAGTCGTTTCTCTCTCATTACAGATACCTAAGCTTGAAAAATTTTAAAGGAAAAAAACTACTTTATCACATTCTGAGCGATCCCCACTGCGTACCGTATTTCTGTAGTTGTTACAAAAAATTGAGAAAACTTGAACTCTGCTCAGCTTCAGGATGAACCCGTTCCTATTTTATATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATGTATCGACCTACCGTATT</pcr_primer_p1>
		<pcr_primer_p2>CTCTTCATGCACCGTATTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAATGTATCGACCTACCGTATTTCTTCTACTTGGAAGCTCACCCAAACCATCAAATTTGAGCTCAATTATCTCCATTACTGTGAAAGATATCAAGGTTTTGTCAACCGGTAAAATATTGGTGATATTGTGATAAGTAATTTATCAGTTGACAAAATTTTGATATCTTTGACAAGAATCGAGATAAGTAGGCTCAAAGTTGACGGTTTGAGTGGGCTTCTACAAGAGGAAATACGGTGCATGAAGAG</canonical_amplicon>
		<polymorphic_amplicon>AAAATGTATCGACCTACCGTATTTCTTCTACTTGGAAGCTCACCCAAACCATCAAATTTGAGCTCAATTATCTCCATTACTGTGAAAGATATCAAGRTTTTGTCAACCGGTAAAATATTGGTGATATTGTGATAAGTAATTTATCAGTTGACAAAATTTTGATATCTTTGACAAGAATCGAGATAAGTAGGCTCAAAGTTGACGGTTTGAGTGGGCTTCTACAAGAGGAAATACGGTGCATGAAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34693</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>928851</contig_pos>
        <strand>+</strand>
        <context>CGTATTTGAA[A/T]ACTTTTTCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCTACAAGAGGAAATACGGTGCATGAAGAGCCCCCATTTCGTATTTGAA</left_flank>
        <right_flank>ACTTTTTCGTGCAAAATGTAGAAATTGAGGAGTTATCGACTTCATCTATC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTATTAATCATAATATCACCAATGTTATATTAGTTGACTCTTTTTCGATATCTCTTGCAGGAATCGAGATAATTGAGCTCAAAGAAGACGATTTGGGTGGGCTTCTACAAGAGGAAATACGGTATTTTTTGGGAAGACGATTCAAATAATGAGATTTTGGTGAATCATCAGAAAACGCCTTGACTGTTTTTTTTTCAATATTTGATATTCGAAATACAAAAAACTGGTATCAAAATGTATCGACCTACCGTATTTCTTCTACTTGGAAGCTCACCCAAACCATCAAATTTGAGCTCAATTATCTCCATTACTGTGAAAGATATCAAGGTTTTGTCAACCGGTAAAATATTGGTGATATTGTGATAAGTAATTTATCAGTTGACAAAATTTTGATATCTTTGACAAGAATCGAGATAAGTAGGCTCAAAGTTGACGGTTTGAGTGGGCTTCTACAAGAGGAAATACGGTGCATGAAGAGCCCCCATTTCGTATTTGAATACTTTTTCGTGCAAAATGTAGAAATTGAGGAGTTATCGACTTCATCTATCCAGTGTTAACTTTCAACTCCGTAGAATCTCCTCTTCGACACTAAACGTCCCGTCTAAGCTTAAGCGAGTACGGAACCATATCCCTATTTTTCGAAATTTTTTCAAGTCGTTTCTCTCTCATTACAGATACCTAAGCTTGAAAAATTTTAAAGGAAAAAAACTACTTTATCACATTCTGAGCGATCCCCACTGCGTACCGTATTTCTGTAGTTGTTACAAAAAATTGAGAAAACTTGAACTCTGCTCAGCTTCAGGATGAACCCGTTCCTATTTTATATGTATTTCTATCTTGTCAACCCAATCCTATAGTTCCAGATGTGTCGCCCAATCTCTACTCTCCTTTTAATCTTTGTTCTCATTCACATCACCTCGTCATTCCTTCAACCTCAACCAACTTGTGACGGTTGTCCGACATGTCAGAATGCAAACGGATGTCCTGCTGCAGTAGGC</canonical>
            <polymorphic>AATTATTAATCATAATATCACCAATGTTATATTAGTTGACTCTTTTTCGATATCTCTTGCAGGAATCGAGATAATTGAGCTCAAAGAAGACGATTTGGGTGGGCTTCTACAAGAGGAAATACGGTATTTTTTGGGAAGACGATTCAAATAATGAGATTTTGGTGAATCATCAGAAAACGCCTTGACTGTTTTTTTTTCAATATTTGATATTCGAAATACAAAAAACTGGTATCAAAATGTATCGACCTACCGTATTTCTTCTACTTGGAAGCTCACCCAAACCATCAAATTTGAGCTCAATTATCTCCATTACTGTGAAAGATATCAAGGTTTTGTCAACCGGTAAAATATTGGTGATATTGTGATAAGTAATTTATCAGTTGACAAAATTTTGATATCTTTGACAAGAATCGAGATAAGTAGGCTCAAAGTTGACGGTTTGAGTGGGCTTCTACAAGAGGAAATACGGTGCATGAAGAGCCCCCATTTCGTATTTGAAWACTTTTTCGTGCAAAATGTAGAAATTGAGGAGTTATCGACTTCATCTATCCAGTGTTAACTTTCAACTCCGTAGAATCTCCTCTTCGACACTAAACGTCCCGTCTAAGCTTAAGCGAGTACGGAACCATATCCCTATTTTTCGAAATTTTTTCAAGTCGTTTCTCTCTCATTACAGATACCTAAGCTTGAAAAATTTTAAAGGAAAAAAACTACTTTATCACATTCTGAGCGATCCCCACTGCGTACCGTATTTCTGTAGTTGTTACAAAAAATTGAGAAAACTTGAACTCTGCTCAGCTTCAGGATGAACCCGTTCCTATTTTATATGTATTTCTATCTTGTCAACCCAATCCTATAGTTCCAGATGTGTCGCCCAATCTCTACTCTCCTTTTAATCTTTGTTCTCATTCACATCACCTCGTCATTCCTTCAACCTCAACCAACTTGTGACGGTTGTCCGACATGTCAGAATGCAAACGGATGTCCTGCTGCAGTAGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTATCGACCTACCGTATTTCT</pcr_primer_p1>
		<pcr_primer_p2>CACTGGATAGATGAAGTCGATAA</pcr_primer_p2>
		<pcr_amplicon_size>319</pcr_amplicon_size>
		<canonical_amplicon>ATGTATCGACCTACCGTATTTCTTCTACTTGGAAGCTCACCCAAACCATCAAATTTGAGCTCAATTATCTCCATTACTGTGAAAGATATCAAGGTTTTGTCAACCGGTAAAATATTGGTGATATTGTGATAAGTAATTTATCAGTTGACAAAATTTTGATATCTTTGACAAGAATCGAGATAAGTAGGCTCAAAGTTGACGGTTTGAGTGGGCTTCTACAAGAGGAAATACGGTGCATGAAGAGCCCCCATTTCGTATTTGAATACTTTTTCGTGCAAAATGTAGAAATTGAGGAGTTATCGACTTCATCTATCCAGTG</canonical_amplicon>
		<polymorphic_amplicon>ATGTATCGACCTACCGTATTTCTTCTACTTGGAAGCTCACCCAAACCATCAAATTTGAGCTCAATTATCTCCATTACTGTGAAAGATATCAAGGTTTTGTCAACCGGTAAAATATTGGTGATATTGTGATAAGTAATTTATCAGTTGACAAAATTTTGATATCTTTGACAAGAATCGAGATAAGTAGGCTCAAAGTTGACGGTTTGAGTGGGCTTCTACAAGAGGAAATACGGTGCATGAAGAGCCCCCATTTCGTATTTGAAWACTTTTTCGTGCAAAATGTAGAAATTGAGGAGTTATCGACTTCATCTATCCAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34694</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>928973</contig_pos>
        <strand>+</strand>
        <context>AAGCGAGTAC[A/G]GAACCATATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGAATCTCCTCTTCGACACTAAACGTCCCGTCTAAGCTTAAGCGAGTAC</left_flank>
        <right_flank>GAACCATATCCCTATTTTTCGAAATTTTTTCAAGTCGTTTCTCTCTCATT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTATTTTTTGGGAAGACGATTCAAATAATGAGATTTTGGTGAATCATCAGAAAACGCCTTGACTGTTTTTTTTTCAATATTTGATATTCGAAATACAAAAAACTGGTATCAAAATGTATCGACCTACCGTATTTCTTCTACTTGGAAGCTCACCCAAACCATCAAATTTGAGCTCAATTATCTCCATTACTGTGAAAGATATCAAGGTTTTGTCAACCGGTAAAATATTGGTGATATTGTGATAAGTAATTTATCAGTTGACAAAATTTTGATATCTTTGACAAGAATCGAGATAAGTAGGCTCAAAGTTGACGGTTTGAGTGGGCTTCTACAAGAGGAAATACGGTGCATGAAGAGCCCCCATTTCGTATTTGAATACTTTTTCGTGCAAAATGTAGAAATTGAGGAGTTATCGACTTCATCTATCCAGTGTTAACTTTCAACTCCGTAGAATCTCCTCTTCGACACTAAACGTCCCGTCTAAGCTTAAGCGAGTACGGAACCATATCCCTATTTTTCGAAATTTTTTCAAGTCGTTTCTCTCTCATTACAGATACCTAAGCTTGAAAAATTTTAAAGGAAAAAAACTACTTTATCACATTCTGAGCGATCCCCACTGCGTACCGTATTTCTGTAGTTGTTACAAAAAATTGAGAAAACTTGAACTCTGCTCAGCTTCAGGATGAACCCGTTCCTATTTTATATGTATTTCTATCTTGTCAACCCAATCCTATAGTTCCAGATGTGTCGCCCAATCTCTACTCTCCTTTTAATCTTTGTTCTCATTCACATCACCTCGTCATTCCTTCAACCTCAACCAACTTGTGACGGTTGTCCGACATGTCAGAATGCAAACGGATGTCCTGCTGCAGTAGGCGGTGGCGGGACAAGTGAAACTAAAACTGAGGTATCCATTTCATTGTGCTTTGACCGCAATGCTCTTTTTTCTTTAACCTATTTTTCTCCTGCAGTCCACAGCCGAATCGACAACTCTCGGAT</canonical>
            <polymorphic>GGTATTTTTTGGGAAGACGATTCAAATAATGAGATTTTGGTGAATCATCAGAAAACGCCTTGACTGTTTTTTTTTCAATATTTGATATTCGAAATACAAAAAACTGGTATCAAAATGTATCGACCTACCGTATTTCTTCTACTTGGAAGCTCACCCAAACCATCAAATTTGAGCTCAATTATCTCCATTACTGTGAAAGATATCAAGGTTTTGTCAACCGGTAAAATATTGGTGATATTGTGATAAGTAATTTATCAGTTGACAAAATTTTGATATCTTTGACAAGAATCGAGATAAGTAGGCTCAAAGTTGACGGTTTGAGTGGGCTTCTACAAGAGGAAATACGGTGCATGAAGAGCCCCCATTTCGTATTTGAATACTTTTTCGTGCAAAATGTAGAAATTGAGGAGTTATCGACTTCATCTATCCAGTGTTAACTTTCAACTCCGTAGAATCTCCTCTTCGACACTAAACGTCCCGTCTAAGCTTAAGCGAGTACRGAACCATATCCCTATTTTTCGAAATTTTTTCAAGTCGTTTCTCTCTCATTACAGATACCTAAGCTTGAAAAATTTTAAAGGAAAAAAACTACTTTATCACATTCTGAGCGATCCCCACTGCGTACCGTATTTCTGTAGTTGTTACAAAAAATTGAGAAAACTTGAACTCTGCTCAGCTTCAGGATGAACCCGTTCCTATTTTATATGTATTTCTATCTTGTCAACCCAATCCTATAGTTCCAGATGTGTCGCCCAATCTCTACTCTCCTTTTAATCTTTGTTCTCATTCACATCACCTCGTCATTCCTTCAACCTCAACCAACTTGTGACGGTTGTCCGACATGTCAGAATGCAAACGGATGTCCTGCTGCAGTAGGCGGTGGCGGGACAAGTGAAACTAAAACTGAGGTATCCATTTCATTGTGCTTTGACCGCAATGCTCTTTTTTCTTTAACCTATTTTTCTCCTGCAGTCCACAGCCGAATCGACAACTCTCGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTAGAAATTGAGGAGTTATCG</pcr_primer_p1>
		<pcr_primer_p2>AACAACTACAGAAATACGGTACG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGTAGAAATTGAGGAGTTATCGACTTCATCTATCCAGTGTTAACTTTCAACTCCGTAGAATCTCCTCTTCGACACTAAACGTCCCGTCTAAGCTTAAGCGAGTACGGAACCATATCCCTATTTTTCGAAATTTTTTCAAGTCGTTTCTCTCTCATTACAGATACCTAAGCTTGAAAAATTTTAAAGGAAAAAAACTACTTTATCACATTCTGAGCGATCCCCACTGCGTACCGTATTTCTGTAGTTGTT</canonical_amplicon>
		<polymorphic_amplicon>ATGTAGAAATTGAGGAGTTATCGACTTCATCTATCCAGTGTTAACTTTCAACTCCGTAGAATCTCCTCTTCGACACTAAACGTCCCGTCTAAGCTTAAGCGAGTACRGAACCATATCCCTATTTTTCGAAATTTTTTCAAGTCGTTTCTCTCTCATTACAGATACCTAAGCTTGAAAAATTTTAAAGGAAAAAAACTACTTTATCACATTCTGAGCGATCCCCACTGCGTACCGTATTTCTGTAGTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34695</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>929036</contig_pos>
        <strand>+</strand>
        <context>AGATACCTAA[A/G]CTTRAAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTTTTCGAAATTTTTTCAAGTCGTTTCTCTCTCATTACAGATACCTAA</left_flank>
        <right_flank>CTTGAAAAATTTTAAAGGAAAAAAACTACTTTATCACATTCTGAGCGATC</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTTTTTTTTTCAATATTTGATATTCGAAATACAAAAAACTGGTATCAAAATGTATCGACCTACCGTATTTCTTCTACTTGGAAGCTCACCCAAACCATCAAATTTGAGCTCAATTATCTCCATTACTGTGAAAGATATCAAGGTTTTGTCAACCGGTAAAATATTGGTGATATTGTGATAAGTAATTTATCAGTTGACAAAATTTTGATATCTTTGACAAGAATCGAGATAAGTAGGCTCAAAGTTGACGGTTTGAGTGGGCTTCTACAAGAGGAAATACGGTGCATGAAGAGCCCCCATTTCGTATTTGAATACTTTTTCGTGCAAAATGTAGAAATTGAGGAGTTATCGACTTCATCTATCCAGTGTTAACTTTCAACTCCGTAGAATCTCCTCTTCGACACTAAACGTCCCGTCTAAGCTTAAGCGAGTACGGAACCATATCCCTATTTTTCGAAATTTTTTCAAGTCGTTTCTCTCTCATTACAGATACCTAAGCTTGAAAAATTTTAAAGGAAAAAAACTACTTTATCACATTCTGAGCGATCCCCACTGCGTACCGTATTTCTGTAGTTGTTACAAAAAATTGAGAAAACTTGAACTCTGCTCAGCTTCAGGATGAACCCGTTCCTATTTTATATGTATTTCTATCTTGTCAACCCAATCCTATAGTTCCAGATGTGTCGCCCAATCTCTACTCTCCTTTTAATCTTTGTTCTCATTCACATCACCTCGTCATTCCTTCAACCTCAACCAACTTGTGACGGTTGTCCGACATGTCAGAATGCAAACGGATGTCCTGCTGCAGTAGGCGGTGGCGGGACAAGTGAAACTAAAACTGAGGTATCCATTTCATTGTGCTTTGACCGCAATGCTCTTTTTTCTTTAACCTATTTTTCTCCTGCAGTCCACAGCCGAATCGACAACTCTCGGATACTATGAACAGTATTGGCAGGGCAACGGATGGAAGACTGATGACGCTGGAAATGTATATGTAG</canonical>
            <polymorphic>CTGTTTTTTTTTCAATATTTGATATTCGAAATACAAAAAACTGGTATCAAAATGTATCGACCTACCGTATTTCTTCTACTTGGAAGCTCACCCAAACCATCAAATTTGAGCTCAATTATCTCCATTACTGTGAAAGATATCAAGGTTTTGTCAACCGGTAAAATATTGGTGATATTGTGATAAGTAATTTATCAGTTGACAAAATTTTGATATCTTTGACAAGAATCGAGATAAGTAGGCTCAAAGTTGACGGTTTGAGTGGGCTTCTACAAGAGGAAATACGGTGCATGAAGAGCCCCCATTTCGTATTTGAATACTTTTTCGTGCAAAATGTAGAAATTGAGGAGTTATCGACTTCATCTATCCAGTGTTAACTTTCAACTCCGTAGAATCTCCTCTTCGACACTAAACGTCCCGTCTAAGCTTAAGCGAGTACGGAACCATATCCCTATTTTTCGAAATTTTTTCAAGTCGTTTCTCTCTCATTACAGATACCTAARCTTGAAAAATTTTAAAGGAAAAAAACTACTTTATCACATTCTGAGCGATCCCCACTGCGTACCGTATTTCTGTAGTTGTTACAAAAAATTGAGAAAACTTGAACTCTGCTCAGCTTCAGGATGAACCCGTTCCTATTTTATATGTATTTCTATCTTGTCAACCCAATCCTATAGTTCCAGATGTGTCGCCCAATCTCTACTCTCCTTTTAATCTTTGTTCTCATTCACATCACCTCGTCATTCCTTCAACCTCAACCAACTTGTGACGGTTGTCCGACATGTCAGAATGCAAACGGATGTCCTGCTGCAGTAGGCGGTGGCGGGACAAGTGAAACTAAAACTGAGGTATCCATTTCATTGTGCTTTGACCGCAATGCTCTTTTTTCTTTAACCTATTTTTCTCCTGCAGTCCACAGCCGAATCGACAACTCTCGGATACTATGAACAGTATTGGCAGGGCAACGGATGGAAGACTGATGACGCTGGAAATGTATATGTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>387 313 113 86 77 24</canonical_bands>
                <polymorphic_bands>387 313 190 86 24</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>419 232 159 77 68 45</canonical_bands>
                <polymorphic_bands>419 232 159 122 68</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>303 129 128 113 86 84 77 32 24 24</canonical_bands>
                <polymorphic_bands>303 190 129 128 86 84 32 24 24</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 421 77</canonical_bands>
                <polymorphic_bands>579 421</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTAGAAATTGAGGAGTTATCG</pcr_primer_p1>
		<pcr_primer_p2>AACAACTACAGAAATACGGTACG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGTAGAAATTGAGGAGTTATCGACTTCATCTATCCAGTGTTAACTTTCAACTCCGTAGAATCTCCTCTTCGACACTAAACGTCCCGTCTAAGCTTAAGCGAGTACGGAACCATATCCCTATTTTTCGAAATTTTTTCAAGTCGTTTCTCTCTCATTACAGATACCTAAGCTTGAAAAATTTTAAAGGAAAAAAACTACTTTATCACATTCTGAGCGATCCCCACTGCGTACCGTATTTCTGTAGTTGTT</canonical_amplicon>
		<polymorphic_amplicon>ATGTAGAAATTGAGGAGTTATCGACTTCATCTATCCAGTGTTAACTTTCAACTCCGTAGAATCTCCTCTTCGACACTAAACGTCCCGTCTAAGCTTAAGCGAGTACGGAACCATATCCCTATTTTTCGAAATTTTTTCAAGTCGTTTCTCTCTCATTACAGATACCTAARCTTGAAAAATTTTAAAGGAAAAAAACTACTTTATCACATTCTGAGCGATCCCCACTGCGTACCGTATTTCTGTAGTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34696</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>929040</contig_pos>
        <strand>+</strand>
        <context>ACCTAARCTT[A/G]AAAAATTTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCGAAATTTTTTCAAGTCGTTTCTCTCTCATTACAGATACCTAAGCTT</left_flank>
        <right_flank>AAAAATTTTAAAGGAAAAAAACTACTTTATCACATTCTGAGCGATCCCCA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTTCAATATTTGATATTCGAAATACAAAAAACTGGTATCAAAATGTATCGACCTACCGTATTTCTTCTACTTGGAAGCTCACCCAAACCATCAAATTTGAGCTCAATTATCTCCATTACTGTGAAAGATATCAAGGTTTTGTCAACCGGTAAAATATTGGTGATATTGTGATAAGTAATTTATCAGTTGACAAAATTTTGATATCTTTGACAAGAATCGAGATAAGTAGGCTCAAAGTTGACGGTTTGAGTGGGCTTCTACAAGAGGAAATACGGTGCATGAAGAGCCCCCATTTCGTATTTGAATACTTTTTCGTGCAAAATGTAGAAATTGAGGAGTTATCGACTTCATCTATCCAGTGTTAACTTTCAACTCCGTAGAATCTCCTCTTCGACACTAAACGTCCCGTCTAAGCTTAAGCGAGTACGGAACCATATCCCTATTTTTCGAAATTTTTTCAAGTCGTTTCTCTCTCATTACAGATACCTAAGCTTGAAAAATTTTAAAGGAAAAAAACTACTTTATCACATTCTGAGCGATCCCCACTGCGTACCGTATTTCTGTAGTTGTTACAAAAAATTGAGAAAACTTGAACTCTGCTCAGCTTCAGGATGAACCCGTTCCTATTTTATATGTATTTCTATCTTGTCAACCCAATCCTATAGTTCCAGATGTGTCGCCCAATCTCTACTCTCCTTTTAATCTTTGTTCTCATTCACATCACCTCGTCATTCCTTCAACCTCAACCAACTTGTGACGGTTGTCCGACATGTCAGAATGCAAACGGATGTCCTGCTGCAGTAGGCGGTGGCGGGACAAGTGAAACTAAAACTGAGGTATCCATTTCATTGTGCTTTGACCGCAATGCTCTTTTTTCTTTAACCTATTTTTCTCCTGCAGTCCACAGCCGAATCGACAACTCTCGGATACTATGAACAGTATTGGCAGGGCAACGGATGGAAGACTGATGACGCTGGAAATGTATATGTAGGAGA</canonical>
            <polymorphic>TTTTTTTTCAATATTTGATATTCGAAATACAAAAAACTGGTATCAAAATGTATCGACCTACCGTATTTCTTCTACTTGGAAGCTCACCCAAACCATCAAATTTGAGCTCAATTATCTCCATTACTGTGAAAGATATCAAGGTTTTGTCAACCGGTAAAATATTGGTGATATTGTGATAAGTAATTTATCAGTTGACAAAATTTTGATATCTTTGACAAGAATCGAGATAAGTAGGCTCAAAGTTGACGGTTTGAGTGGGCTTCTACAAGAGGAAATACGGTGCATGAAGAGCCCCCATTTCGTATTTGAATACTTTTTCGTGCAAAATGTAGAAATTGAGGAGTTATCGACTTCATCTATCCAGTGTTAACTTTCAACTCCGTAGAATCTCCTCTTCGACACTAAACGTCCCGTCTAAGCTTAAGCGAGTACGGAACCATATCCCTATTTTTCGAAATTTTTTCAAGTCGTTTCTCTCTCATTACAGATACCTAAGCTTRAAAAATTTTAAAGGAAAAAAACTACTTTATCACATTCTGAGCGATCCCCACTGCGTACCGTATTTCTGTAGTTGTTACAAAAAATTGAGAAAACTTGAACTCTGCTCAGCTTCAGGATGAACCCGTTCCTATTTTATATGTATTTCTATCTTGTCAACCCAATCCTATAGTTCCAGATGTGTCGCCCAATCTCTACTCTCCTTTTAATCTTTGTTCTCATTCACATCACCTCGTCATTCCTTCAACCTCAACCAACTTGTGACGGTTGTCCGACATGTCAGAATGCAAACGGATGTCCTGCTGCAGTAGGCGGTGGCGGGACAAGTGAAACTAAAACTGAGGTATCCATTTCATTGTGCTTTGACCGCAATGCTCTTTTTTCTTTAACCTATTTTTCTCCTGCAGTCCACAGCCGAATCGACAACTCTCGGATACTATGAACAGTATTGGCAGGGCAACGGATGGAAGACTGATGACGCTGGAAATGTATATGTAGGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTAGAAATTGAGGAGTTATCG</pcr_primer_p1>
		<pcr_primer_p2>AACAACTACAGAAATACGGTACG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGTAGAAATTGAGGAGTTATCGACTTCATCTATCCAGTGTTAACTTTCAACTCCGTAGAATCTCCTCTTCGACACTAAACGTCCCGTCTAAGCTTAAGCGAGTACGGAACCATATCCCTATTTTTCGAAATTTTTTCAAGTCGTTTCTCTCTCATTACAGATACCTAAGCTTGAAAAATTTTAAAGGAAAAAAACTACTTTATCACATTCTGAGCGATCCCCACTGCGTACCGTATTTCTGTAGTTGTT</canonical_amplicon>
		<polymorphic_amplicon>ATGTAGAAATTGAGGAGTTATCGACTTCATCTATCCAGTGTTAACTTTCAACTCCGTAGAATCTCCTCTTCGACACTAAACGTCCCGTCTAAGCTTAAGCGAGTACGGAACCATATCCCTATTTTTCGAAATTTTTTCAAGTCGTTTCTCTCTCATTACAGATACCTAAGCTTRAAAAATTTTAAAGGAAAAAAACTACTTTATCACATTCTGAGCGATCCCCACTGCGTACCGTATTTCTGTAGTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34697</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>932620</contig_pos>
        <strand></strand>
        <context>ccaatttttt[A/G]aaccagaata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACCTCCGGCAACGGCCAACGGGCTTTCTCTTAGAAAGCTCCAATTTTTT</left_flank>
        <right_flank>AACCAGAATATTATTATTTTTCGTTTTTAAGATTTCCGATTTTCACGATG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTTTCAAGTGTCCTGTTTTCTATCCCTCATGGTCTTTCTTGGGTTTTTTTCGGTCAAAAATGTGTTTTGATTGATGCTCTTATAGACTCATTCCATTTTCTCACTTCACATTCATATTCCGCCTCTTTTTTTTTATTCTCTGGTCGTTTCAATTTTATTAGCTAGCCGATAGGCAATCTCAGATTTTTCTTCAACGAAAAATAGGTTTTTAAATCTTAAGAATATAATTCTGGTATCAAAAAAAATTGGAGCTGTGGAAGAGAAACGCCGGTGACCGTGGTCGAAGGTCCCACAACAAATACCATAACCTAATTTTTTTTTGAATCTCAGGATTTAGTTTCTCGTTTTCTATGATTTTTGTCAGTTTTCTGTTGTTTTTCCTCGAAAATAAACAAAAAAATGACGGAAAACGGACGAAAATCGAGGTTACGGTAGTTGTCATAGTGGGACCTCCGGCAACGGCCAACGGGCTTTCTCTTAGAAAGCTCCAATTTTTTAAACCAGAATATTATTATTTTTCGTTTTTAAGATTTCCGATTTTCACGATGTTCCTAGAAGACGTTCATAAGCTCGTATCCACATCATACTTGTGGAAAAGATGGCCGGGCCATGGCCGGGCTGAGATTTTTCTAAAAGCGGGCCGGGCCGGAAAAAATTACACACGGCCCGCCTTTGAAAATTTTGAAATTTTAGAGCGAATCATCATTTTTCAAGATGATTTTTCTTCTTAGTGAATGAAAGTCCACACTAGAGGCCGATACTGTCGACAAAAACTGTTTTGAAGTCGTAATTAGAAAAAAAGTTTCATCCTTGGCTTAATGAAGTTTGATTTTTCTTGCTAAAAATTCAATTAAATTGACTTTTTCGGATGGTTGTATGCATTTGGATTAATATTTGTGCCATTATAAATATTTTGGCACATTCGAAAAATAAAATTTTCGAAAAGTTGTCCTAGGCAAGACGAGCGGGCCGGCCATCCACATGTATGATCCACATAA</canonical>
            <polymorphic>ACTTTTCAAGTGTCCTGTTTTCTATCCCTCATGGTCTTTCTTGGGTTTTTTTCGGTCAAAAATGTGTTTTGATTGATGCTCTTATAGACTCATTCCATTTTCTCACTTCACATTCATATTCCGCCTCTTTTTTTTTATTCTCTGGTCGTTTCAATTTTATTAGCTAGCCGATAGGCAATCTCAGATTTTTCTTCAACGAAAAATAGGTTTTTAAATCTTAAGAATATAATTCTGGTATCAAAAAAAATTGGAGCTGTGGAAGAGAAACGCCGGTGACCGTGGTCGAAGGTCCCACAACAAATACCATAACCTAATTTTTTTTTGAATCTCAGGATTTAGTTTCTCGTTTTCTATGATTTTTGTCAGTTTTCTGTTGTTTTTCCTCGAAAATAAACAAAAAAATGACGGAAAACGGACGAAAATCGAGGTTACGGTAGTTGTCATAGTGGGACCTCCGGCAACGGCCAACGGGCTTTCTCTTAGAAAGCTCCAATTTTTTRAACCAGAATATTATTATTTTTCGTTTTTAAGATTTCCGATTTTCACGATGTTCCTAGAAGACGTTCATAAGCTCGTATCCACATCATACTTGTGGAAAAGATGGCCGGGCCATGGCCGGGCTGAGATTTTTCTAAAAGCGGGCCGGGCCGGAAAAAATTACACACGGCCCGCCTTTGAAAATTTTGAAATTTTAGAGCGAATCATCATTTTTCAAGATGATTTTTCTTCTTAGTGAATGAAAGTCCACACTAGAGGCCGATACTGTCGACAAAAACTGTTTTGAAGTCGTAATTAGAAAAAAAGTTTCATCCTTGGCTTAATGAAGTTTGATTTTTCTTGCTAAAAATTCAATTAAATTGACTTTTTCGGATGGTTGTATGCATTTGGATTAATATTTGTGCCATTATAAATATTTTGGCACATTCGAAAAATAAAATTTTCGAAAAGTTGTCCTAGGCAAGACGAGCGGGCCGGCCATCCACATGTATGATCCACATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 287 212</canonical_bands>
                <polymorphic_bands>788 212</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>291 280 211 110 37 35 29 7</canonical_bands>
                <polymorphic_bands>309 291 211 110 37 35 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTCAACGAAAAATAGGTT</pcr_primer_p1>
		<pcr_primer_p2>CTTCTAGGAACATCGTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>373</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTCAACGAAAAATAGGTTTTTAAATCTTAAGAATATAATTCTGGTATCAAAAAAAATTGGAGCTGTGGAAGAGAAACGCCGGTGACCGTGGTCGAAGGTCCCACAACAAATACCATAACCTAATTTTTTTTTGAATCTCAGGATTTAGTTTCTCGTTTTCTATGATTTTTGTCAGTTTTCTGTTGTTTTTCCTCGAAAATAAACAAAAAAATGACGGAAAACGGACGAAAATCGAGGTTACGGTAGTTGTCATAGTGGGACCTCCGGCAACGGCCAACGGGCTTTCTCTTAGAAAGCTCCAATTTTTTAAACCAGAATATTATTATTTTTCGTTTTTAAGATTTCCGATTTTCACGATGTTCCTAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTCAACGAAAAATAGGTTTTTAAATCTTAAGAATATAATTCTGGTATCAAAAAAAATTGGAGCTGTGGAAGAGAAACGCCGGTGACCGTGGTCGAAGGTCCCACAACAAATACCATAACCTAATTTTTTTTTGAATCTCAGGATTTAGTTTCTCGTTTTCTATGATTTTTGTCAGTTTTCTGTTGTTTTTCCTCGAAAATAAACAAAAAAATGACGGAAAACGGACGAAAATCGAGGTTACGGTAGTTGTCATAGTGGGACCTCCGGCAACGGCCAACGGGCTTTCTCTTAGAAAGCTCCAATTTTTTRAACCAGAATATTATTATTTTTCGTTTTTAAGATTTCCGATTTTCACGATGTTCCTAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34698</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>994957</contig_pos>
        <strand>+</strand>
        <context>CGACGTCTCA[C/T]GAGTCTGARA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTTGCTCTGGGGGGTTTGTTGGATCATTTCAAAGCTGCGACGTCTCA</left_flank>
        <right_flank>GAGTCTGAAAACTTTGGAAATTCAAAAAAAGGAATCACAGATTTTTGGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATCAGCAGGATCTAACAAGTCACCCAGCTCCAGATAGATCCCTCAAGGTTTATTGGCGAAAAATTGCAGATAGTGGGCAAGAGCCCGTCTTATGATACGAAAGAGTACCAAGGCGACGACCCTATGTGTCAGATGGGGCCGGAGGCACCCTCAGTTTCCAAGCGTCCGGCTGAATTGCCAAAATACAGTATCTGGGACTCAAAACGCCGGTACAAAATTCAAGAACTTTCTGCAGCTCTTATCAGTTGTACCACCCTTAAAAACTGAAGACAAAAACGACCCCGTCTCTGCTCGCTAAAGACTCATGAGTCTTAGGGAAGTTTAGGTTCAGTTTTTTTCCCGATAGTTCTGGTTTACACATTTCGAGGCAGACTGACACGGTTTGCCGGTGTGCGCCGACCACGACCAACTGACACAGACCCATATTTCAACGATTTCCGAGAATTCATTTTTGCTCTGGGGGGTTTGTTGGATCATTTCAAAGCTGCGACGTCTCATGAGTCTGAAAACTTTGGAAATTCAAAAAAAGGAATCACAGATTTTTGGAATTTCAGAATTTCATAATTTCAAAATTTCAGGATTTCGGAATCTTAAAATTTCAGAATTCCAAAATTTAAGAATTTCAGGATATCGGTATTATAACATTTCAGAATCTTAAAATTTCAGAATCTCAGAATTTAATTTTTTCAAATTTCTGAATTTCTGAAATTTAAATATTTCAGAGTTTCAGAACTTCACACATTCAGAACCTTTAAATTTCAAAATTTCAGACTTCCAGAATTTCAAAATTTCAGTAGTTTAGAATTTCAGGTTTTCAGATTTTCGAGTTTCCGGATTTCAGTATTTCCGGAATTAGAATTTCAGAATTTCAGATTTTCAGAACTTCAGAATTTCTTCAAAAAAGAAATTACCTTTTTCAAAACGGAGAGCGTTTTCTTTGAATTAGTTGGAATAAATTTAAATACTATTTTATTCATAACCACGTCATCAAAAAAAAT</canonical>
            <polymorphic>CTATCAGCAGGATCTAACAAGTCACCCAGCTCCAGATAGATCCCTCAAGGTTTATTGGCGAAAAATTGCAGATAGTGGGCAAGAGCCCGTCTTATGATACGAAAGAGTACCAAGGCGACGACCCTATGTGTCAGATGGGGCCGGAGGCACCCTCAGTTTCCAAGCGTCCGGCTGAATTGCCAAAATACAGTATCTGGGACTCAAAACGCCGGTACAAAATTCAAGAACTTTCTGCAGCTCTTATCAGTTGTACCACCCTTAAAAACTGAAGACAAAAACGACCCCGTCTCTGCTCGCTAAAGACTCATGAGTCTTAGGGAAGTTTAGGTTCAGTTTTTTTCCCGATAGTTCTGGTTTACACATTTCGAGGCAGACTGACACGGTTTGCCGGTGTGCGCCGACCACGACCAACTGACACAGACCCATATTTCAACGATTTCCGAGAATTCATTTTTGCTCTGGGGGGTTTGTTGGATCATTTCAAAGCTGCGACGTCTCAYGAGTCTGAAAACTTTGGAAATTCAAAAAAAGGAATCACAGATTTTTGGAATTTCAGAATTTCATAATTTCAAAATTTCAGGATTTCGGAATCTTAAAATTTCAGAATTCCAAAATTTAAGAATTTCAGGATATCGGTATTATAACATTTCAGAATCTTAAAATTTCAGAATCTCAGAATTTAATTTTTTCAAATTTCTGAATTTCTGAAATTTAAATATTTCAGAGTTTCAGAACTTCACACATTCAGAACCTTTAAATTTCAAAATTTCAGACTTCCAGAATTTCAAAATTTCAGTAGTTTAGAATTTCAGGTTTTCAGATTTTCGAGTTTCCGGATTTCAGTATTTCCGGAATTAGAATTTCAGAATTTCAGATTTTCAGAACTTCAGAATTTCTTCAAAAAAGAAATTACCTTTTTCAAAACGGAGAGCGTTTTCTTTGAATTAGTTGGAATAAATTTAAATACTATTTTATTCATAACCACGTCATCAAAAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>503 305 192</canonical_bands>
                <polymorphic_bands>695 305</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 306 192</canonical_bands>
                <polymorphic_bands>694 306</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAGAATTCATTTTTGCTCT</pcr_primer_p1>
		<pcr_primer_p2>CGTTTTGAAAAAGGTAATTTCT</pcr_primer_p2>
		<pcr_amplicon_size>486</pcr_amplicon_size>
		<canonical_amplicon>CGAGAATTCATTTTTGCTCTGGGGGGTTTGTTGGATCATTTCAAAGCTGCGACGTCTCATGAGTCTGAAAACTTTGGAAATTCAAAAAAAGGAATCACAGATTTTTGGAATTTCAGAATTTCATAATTTCAAAATTTCAGGATTTCGGAATCTTAAAATTTCAGAATTCCAAAATTTAAGAATTTCAGGATATCGGTATTATAACATTTCAGAATCTTAAAATTTCAGAATCTCAGAATTTAATTTTTTCAAATTTCTGAATTTCTGAAATTTAAATATTTCAGAGTTTCAGAACTTCACACATTCAGAACCTTTAAATTTCAAAATTTCAGACTTCCAGAATTTCAAAATTTCAGTAGTTTAGAATTTCAGGTTTTCAGATTTTCGAGTTTCCGGATTTCAGTATTTCCGGAATTAGAATTTCAGAATTTCAGATTTTCAGAACTTCAGAATTTCTTCAAAAAAGAAATTACCTTTTTCAAAACG</canonical_amplicon>
		<polymorphic_amplicon>CGAGAATTCATTTTTGCTCTGGGGGGTTTGTTGGATCATTTCAAAGCTGCGACGTCTCAYGAGTCTGAAAACTTTGGAAATTCAAAAAAAGGAATCACAGATTTTTGGAATTTCAGAATTTCATAATTTCAAAATTTCAGGATTTCGGAATCTTAAAATTTCAGAATTCCAAAATTTAAGAATTTCAGGATATCGGTATTATAACATTTCAGAATCTTAAAATTTCAGAATCTCAGAATTTAATTTTTTCAAATTTCTGAATTTCTGAAATTTAAATATTTCAGAGTTTCAGAACTTCACACATTCAGAACCTTTAAATTTCAAAATTTCAGACTTCCAGAATTTCAAAATTTCAGTAGTTTAGAATTTCAGGTTTTCAGATTTTCGAGTTTCCGGATTTCAGTATTTCCGGAATTAGAATTTCAGAATTTCAGATTTTCAGAACTTCAGAATTTCTTCAAAAAAGAAATTACCTTTTTCAAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34699</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>994966</contig_pos>
        <strand>+</strand>
        <context>AYGAGTCTGA[A/G]AACTTTGGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGGGGGGTTTGTTGGATCATTTCAAAGCTGCGACGTCTCATGAGTCTGA</left_flank>
        <right_flank>AACTTTGGAAATTCAAAAAAAGGAATCACAGATTTTTGGAATTTCAGAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATCTAACAAGTCACCCAGCTCCAGATAGATCCCTCAAGGTTTATTGGCGAAAAATTGCAGATAGTGGGCAAGAGCCCGTCTTATGATACGAAAGAGTACCAAGGCGACGACCCTATGTGTCAGATGGGGCCGGAGGCACCCTCAGTTTCCAAGCGTCCGGCTGAATTGCCAAAATACAGTATCTGGGACTCAAAACGCCGGTACAAAATTCAAGAACTTTCTGCAGCTCTTATCAGTTGTACCACCCTTAAAAACTGAAGACAAAAACGACCCCGTCTCTGCTCGCTAAAGACTCATGAGTCTTAGGGAAGTTTAGGTTCAGTTTTTTTCCCGATAGTTCTGGTTTACACATTTCGAGGCAGACTGACACGGTTTGCCGGTGTGCGCCGACCACGACCAACTGACACAGACCCATATTTCAACGATTTCCGAGAATTCATTTTTGCTCTGGGGGGTTTGTTGGATCATTTCAAAGCTGCGACGTCTCATGAGTCTGAAAACTTTGGAAATTCAAAAAAAGGAATCACAGATTTTTGGAATTTCAGAATTTCATAATTTCAAAATTTCAGGATTTCGGAATCTTAAAATTTCAGAATTCCAAAATTTAAGAATTTCAGGATATCGGTATTATAACATTTCAGAATCTTAAAATTTCAGAATCTCAGAATTTAATTTTTTCAAATTTCTGAATTTCTGAAATTTAAATATTTCAGAGTTTCAGAACTTCACACATTCAGAACCTTTAAATTTCAAAATTTCAGACTTCCAGAATTTCAAAATTTCAGTAGTTTAGAATTTCAGGTTTTCAGATTTTCGAGTTTCCGGATTTCAGTATTTCCGGAATTAGAATTTCAGAATTTCAGATTTTCAGAACTTCAGAATTTCTTCAAAAAAGAAATTACCTTTTTCAAAACGGAGAGCGTTTTCTTTGAATTAGTTGGAATAAATTTAAATACTATTTTATTCATAACCACGTCATCAAAAAAAATTGAAAAACT</canonical>
            <polymorphic>GGATCTAACAAGTCACCCAGCTCCAGATAGATCCCTCAAGGTTTATTGGCGAAAAATTGCAGATAGTGGGCAAGAGCCCGTCTTATGATACGAAAGAGTACCAAGGCGACGACCCTATGTGTCAGATGGGGCCGGAGGCACCCTCAGTTTCCAAGCGTCCGGCTGAATTGCCAAAATACAGTATCTGGGACTCAAAACGCCGGTACAAAATTCAAGAACTTTCTGCAGCTCTTATCAGTTGTACCACCCTTAAAAACTGAAGACAAAAACGACCCCGTCTCTGCTCGCTAAAGACTCATGAGTCTTAGGGAAGTTTAGGTTCAGTTTTTTTCCCGATAGTTCTGGTTTACACATTTCGAGGCAGACTGACACGGTTTGCCGGTGTGCGCCGACCACGACCAACTGACACAGACCCATATTTCAACGATTTCCGAGAATTCATTTTTGCTCTGGGGGGTTTGTTGGATCATTTCAAAGCTGCGACGTCTCATGAGTCTGARAACTTTGGAAATTCAAAAAAAGGAATCACAGATTTTTGGAATTTCAGAATTTCATAATTTCAAAATTTCAGGATTTCGGAATCTTAAAATTTCAGAATTCCAAAATTTAAGAATTTCAGGATATCGGTATTATAACATTTCAGAATCTTAAAATTTCAGAATCTCAGAATTTAATTTTTTCAAATTTCTGAATTTCTGAAATTTAAATATTTCAGAGTTTCAGAACTTCACACATTCAGAACCTTTAAATTTCAAAATTTCAGACTTCCAGAATTTCAAAATTTCAGTAGTTTAGAATTTCAGGTTTTCAGATTTTCGAGTTTCCGGATTTCAGTATTTCCGGAATTAGAATTTCAGAATTTCAGATTTTCAGAACTTCAGAATTTCTTCAAAAAAGAAATTACCTTTTTCAAAACGGAGAGCGTTTTCTTTGAATTAGTTGGAATAAATTTAAATACTATTTTATTCATAACCACGTCATCAAAAAAAATTGAAAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGAATTCATTTTTGCTCT</pcr_primer_p1>
		<pcr_primer_p2>CGTTTTGAAAAAGGTAATTTCT</pcr_primer_p2>
		<pcr_amplicon_size>486</pcr_amplicon_size>
		<canonical_amplicon>CGAGAATTCATTTTTGCTCTGGGGGGTTTGTTGGATCATTTCAAAGCTGCGACGTCTCATGAGTCTGAAAACTTTGGAAATTCAAAAAAAGGAATCACAGATTTTTGGAATTTCAGAATTTCATAATTTCAAAATTTCAGGATTTCGGAATCTTAAAATTTCAGAATTCCAAAATTTAAGAATTTCAGGATATCGGTATTATAACATTTCAGAATCTTAAAATTTCAGAATCTCAGAATTTAATTTTTTCAAATTTCTGAATTTCTGAAATTTAAATATTTCAGAGTTTCAGAACTTCACACATTCAGAACCTTTAAATTTCAAAATTTCAGACTTCCAGAATTTCAAAATTTCAGTAGTTTAGAATTTCAGGTTTTCAGATTTTCGAGTTTCCGGATTTCAGTATTTCCGGAATTAGAATTTCAGAATTTCAGATTTTCAGAACTTCAGAATTTCTTCAAAAAAGAAATTACCTTTTTCAAAACG</canonical_amplicon>
		<polymorphic_amplicon>CGAGAATTCATTTTTGCTCTGGGGGGTTTGTTGGATCATTTCAAAGCTGCGACGTCTCATGAGTCTGARAACTTTGGAAATTCAAAAAAAGGAATCACAGATTTTTGGAATTTCAGAATTTCATAATTTCAAAATTTCAGGATTTCGGAATCTTAAAATTTCAGAATTCCAAAATTTAAGAATTTCAGGATATCGGTATTATAACATTTCAGAATCTTAAAATTTCAGAATCTCAGAATTTAATTTTTTCAAATTTCTGAATTTCTGAAATTTAAATATTTCAGAGTTTCAGAACTTCACACATTCAGAACCTTTAAATTTCAAAATTTCAGACTTCCAGAATTTCAAAATTTCAGTAGTTTAGAATTTCAGGTTTTCAGATTTTCGAGTTTCCGGATTTCAGTATTTCCGGAATTAGAATTTCAGAATTTCAGATTTTCAGAACTTCAGAATTTCTTCAAAAAAGAAATTACCTTTTTCAAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34700</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>995089</contig_pos>
        <strand></strand>
        <context>atttcaggat[A/T]tcggtattat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTCGGAATCTTAAAATTTCAGAATTCCAAAATTTAAGAATTTCAGGAT</left_flank>
        <right_flank>TCGGTATTATAACATTTCAGAATCTTAAAATTTCAGAATCTCAGAATTTA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATGGGGCCGGAGGCACCCTCAGTTTCCAAGCGTCCGGCTGAATTGCCAAAATACAGTATCTGGGACTCAAAACGCCGGTACAAAATTCAAGAACTTTCTGCAGCTCTTATCAGTTGTACCACCCTTAAAAACTGAAGACAAAAACGACCCCGTCTCTGCTCGCTAAAGACTCATGAGTCTTAGGGAAGTTTAGGTTCAGTTTTTTTCCCGATAGTTCTGGTTTACACATTTCGAGGCAGACTGACACGGTTTGCCGGTGTGCGCCGACCACGACCAACTGACACAGACCCATATTTCAACGATTTCCGAGAATTCATTTTTGCTCTGGGGGGTTTGTTGGATCATTTCAAAGCTGCGACGTCTCATGAGTCTGAAAACTTTGGAAATTCAAAAAAAGGAATCACAGATTTTTGGAATTTCAGAATTTCATAATTTCAAAATTTCAGGATTTCGGAATCTTAAAATTTCAGAATTCCAAAATTTAAGAATTTCAGGATATCGGTATTATAACATTTCAGAATCTTAAAATTTCAGAATCTCAGAATTTAATTTTTTCAAATTTCTGAATTTCTGAAATTTAAATATTTCAGAGTTTCAGAACTTCACACATTCAGAACCTTTAAATTTCAAAATTTCAGACTTCCAGAATTTCAAAATTTCAGTAGTTTAGAATTTCAGGTTTTCAGATTTTCGAGTTTCCGGATTTCAGTATTTCCGGAATTAGAATTTCAGAATTTCAGATTTTCAGAACTTCAGAATTTCTTCAAAAAAGAAATTACCTTTTTCAAAACGGAGAGCGTTTTCTTTGAATTAGTTGGAATAAATTTAAATACTATTTTATTCATAACCACGTCATCAAAAAAAATTGAAAAACTAGGCGCTCACGTAGACATAACAATTCTTTTCACTTGAAAATTTTAAAATGTGAGAATTTGACCTATTTTTATGAAGGTCCATCTTTTCGACATTGGGTTTGAAATGTTTCAAGAAAAATTCTT</canonical>
            <polymorphic>AGATGGGGCCGGAGGCACCCTCAGTTTCCAAGCGTCCGGCTGAATTGCCAAAATACAGTATCTGGGACTCAAAACGCCGGTACAAAATTCAAGAACTTTCTGCAGCTCTTATCAGTTGTACCACCCTTAAAAACTGAAGACAAAAACGACCCCGTCTCTGCTCGCTAAAGACTCATGAGTCTTAGGGAAGTTTAGGTTCAGTTTTTTTCCCGATAGTTCTGGTTTACACATTTCGAGGCAGACTGACACGGTTTGCCGGTGTGCGCCGACCACGACCAACTGACACAGACCCATATTTCAACGATTTCCGAGAATTCATTTTTGCTCTGGGGGGTTTGTTGGATCATTTCAAAGCTGCGACGTCTCATGAGTCTGAAAACTTTGGAAATTCAAAAAAAGGAATCACAGATTTTTGGAATTTCAGAATTTCATAATTTCAAAATTTCAGGATTTCGGAATCTTAAAATTTCAGAATTCCAAAATTTAAGAATTTCAGGATWTCGGTATTATAACATTTCAGAATCTTAAAATTTCAGAATCTCAGAATTTAATTTTTTCAAATTTCTGAATTTCTGAAATTTAAATATTTCAGAGTTTCAGAACTTCACACATTCAGAACCTTTAAATTTCAAAATTTCAGACTTCCAGAATTTCAAAATTTCAGTAGTTTAGAATTTCAGGTTTTCAGATTTTCGAGTTTCCGGATTTCAGTATTTCCGGAATTAGAATTTCAGAATTTCAGATTTTCAGAACTTCAGAATTTCTTCAAAAAAGAAATTACCTTTTTCAAAACGGAGAGCGTTTTCTTTGAATTAGTTGGAATAAATTTAAATACTATTTTATTCATAACCACGTCATCAAAAAAAATTGAAAAACTAGGCGCTCACGTAGACATAACAATTCTTTTCACTTGAAAATTTTAAAATGTGAGAATTTGACCTATTTTTATGAAGGTCCATCTTTTCGACATTGGGTTTGAAATGTTTCAAGAAAAATTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTGTTGGATCATTTCAAAG</pcr_primer_p1>
		<pcr_primer_p2>CGTTTTGAAAAAGGTAATTTCT</pcr_primer_p2>
		<pcr_amplicon_size>461</pcr_amplicon_size>
		<canonical_amplicon>GTTTGTTGGATCATTTCAAAGCTGCGACGTCTCATGAGTCTGAAAACTTTGGAAATTCAAAAAAAGGAATCACAGATTTTTGGAATTTCAGAATTTCATAATTTCAAAATTTCAGGATTTCGGAATCTTAAAATTTCAGAATTCCAAAATTTAAGAATTTCAGGATATCGGTATTATAACATTTCAGAATCTTAAAATTTCAGAATCTCAGAATTTAATTTTTTCAAATTTCTGAATTTCTGAAATTTAAATATTTCAGAGTTTCAGAACTTCACACATTCAGAACCTTTAAATTTCAAAATTTCAGACTTCCAGAATTTCAAAATTTCAGTAGTTTAGAATTTCAGGTTTTCAGATTTTCGAGTTTCCGGATTTCAGTATTTCCGGAATTAGAATTTCAGAATTTCAGATTTTCAGAACTTCAGAATTTCTTCAAAAAAGAAATTACCTTTTTCAAAACG</canonical_amplicon>
		<polymorphic_amplicon>GTTTGTTGGATCATTTCAAAGCTGCGACGTCTCATGAGTCTGAAAACTTTGGAAATTCAAAAAAAGGAATCACAGATTTTTGGAATTTCAGAATTTCATAATTTCAAAATTTCAGGATTTCGGAATCTTAAAATTTCAGAATTCCAAAATTTAAGAATTTCAGGATWTCGGTATTATAACATTTCAGAATCTTAAAATTTCAGAATCTCAGAATTTAATTTTTTCAAATTTCTGAATTTCTGAAATTTAAATATTTCAGAGTTTCAGAACTTCACACATTCAGAACCTTTAAATTTCAAAATTTCAGACTTCCAGAATTTCAAAATTTCAGTAGTTTAGAATTTCAGGTTTTCAGATTTTCGAGTTTCCGGATTTCAGTATTTCCGGAATTAGAATTTCAGAATTTCAGATTTTCAGAACTTCAGAATTTCTTCAAAAAAGAAATTACCTTTTTCAAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34701</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>995139</contig_pos>
        <strand></strand>
        <context>ctcagaattt[A/C]attttttcaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCGGTATTATAACATTTCAGAATCTTAAAATTTCAGAATCTCAGAATTT</left_flank>
        <right_flank>ATTTTTTCAAATTTCTGAATTTCTGAAATTTAAATATTTCAGAGTTTCAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATACAGTATCTGGGACTCAAAACGCCGGTACAAAATTCAAGAACTTTCTGCAGCTCTTATCAGTTGTACCACCCTTAAAAACTGAAGACAAAAACGACCCCGTCTCTGCTCGCTAAAGACTCATGAGTCTTAGGGAAGTTTAGGTTCAGTTTTTTTCCCGATAGTTCTGGTTTACACATTTCGAGGCAGACTGACACGGTTTGCCGGTGTGCGCCGACCACGACCAACTGACACAGACCCATATTTCAACGATTTCCGAGAATTCATTTTTGCTCTGGGGGGTTTGTTGGATCATTTCAAAGCTGCGACGTCTCATGAGTCTGAAAACTTTGGAAATTCAAAAAAAGGAATCACAGATTTTTGGAATTTCAGAATTTCATAATTTCAAAATTTCAGGATTTCGGAATCTTAAAATTTCAGAATTCCAAAATTTAAGAATTTCAGGATATCGGTATTATAACATTTCAGAATCTTAAAATTTCAGAATCTCAGAATTTAATTTTTTCAAATTTCTGAATTTCTGAAATTTAAATATTTCAGAGTTTCAGAACTTCACACATTCAGAACCTTTAAATTTCAAAATTTCAGACTTCCAGAATTTCAAAATTTCAGTAGTTTAGAATTTCAGGTTTTCAGATTTTCGAGTTTCCGGATTTCAGTATTTCCGGAATTAGAATTTCAGAATTTCAGATTTTCAGAACTTCAGAATTTCTTCAAAAAAGAAATTACCTTTTTCAAAACGGAGAGCGTTTTCTTTGAATTAGTTGGAATAAATTTAAATACTATTTTATTCATAACCACGTCATCAAAAAAAATTGAAAAACTAGGCGCTCACGTAGACATAACAATTCTTTTCACTTGAAAATTTTAAAATGTGAGAATTTGACCTATTTTTATGAAGGTCCATCTTTTCGACATTGGGTTTGAAATGTTTCAAGAAAAATTCTTCTCGAAAACTTGGGTCATGCCACGAAAATTCGAAAATTCAAATTTCAAGA</canonical>
            <polymorphic>AAATACAGTATCTGGGACTCAAAACGCCGGTACAAAATTCAAGAACTTTCTGCAGCTCTTATCAGTTGTACCACCCTTAAAAACTGAAGACAAAAACGACCCCGTCTCTGCTCGCTAAAGACTCATGAGTCTTAGGGAAGTTTAGGTTCAGTTTTTTTCCCGATAGTTCTGGTTTACACATTTCGAGGCAGACTGACACGGTTTGCCGGTGTGCGCCGACCACGACCAACTGACACAGACCCATATTTCAACGATTTCCGAGAATTCATTTTTGCTCTGGGGGGTTTGTTGGATCATTTCAAAGCTGCGACGTCTCATGAGTCTGAAAACTTTGGAAATTCAAAAAAAGGAATCACAGATTTTTGGAATTTCAGAATTTCATAATTTCAAAATTTCAGGATTTCGGAATCTTAAAATTTCAGAATTCCAAAATTTAAGAATTTCAGGATATCGGTATTATAACATTTCAGAATCTTAAAATTTCAGAATCTCAGAATTTMATTTTTTCAAATTTCTGAATTTCTGAAATTTAAATATTTCAGAGTTTCAGAACTTCACACATTCAGAACCTTTAAATTTCAAAATTTCAGACTTCCAGAATTTCAAAATTTCAGTAGTTTAGAATTTCAGGTTTTCAGATTTTCGAGTTTCCGGATTTCAGTATTTCCGGAATTAGAATTTCAGAATTTCAGATTTTCAGAACTTCAGAATTTCTTCAAAAAAGAAATTACCTTTTTCAAAACGGAGAGCGTTTTCTTTGAATTAGTTGGAATAAATTTAAATACTATTTTATTCATAACCACGTCATCAAAAAAAATTGAAAAACTAGGCGCTCACGTAGACATAACAATTCTTTTCACTTGAAAATTTTAAAATGTGAGAATTTGACCTATTTTTATGAAGGTCCATCTTTTCGACATTGGGTTTGAAATGTTTCAAGAAAAATTCTTCTCGAAAACTTGGGTCATGCCACGAAAATTCGAAAATTCAAATTTCAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>334 206 130 92 77 42 41 32 23 23</canonical_bands>
                <polymorphic_bands>334 206 130 92 77 55 42 41 23</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>227 74 62 48 48 41 40 35 35 33 33 30 24 24 17 17 16 16 16 16 14 10 10 9 8 8 8 8 8 8 8 8 8 8 8 6 6 5</canonical_bands>
                <polymorphic_bands>227 74 62 48 48 41 40 35 35 33 33 30 24 24 17 17 16 16 16 16 15 14 10 9 8 8 8 8 8 8 8 8 8 8 8 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTGTTGGATCATTTCAAAG</pcr_primer_p1>
		<pcr_primer_p2>CGTTTTGAAAAAGGTAATTTCT</pcr_primer_p2>
		<pcr_amplicon_size>461</pcr_amplicon_size>
		<canonical_amplicon>GTTTGTTGGATCATTTCAAAGCTGCGACGTCTCATGAGTCTGAAAACTTTGGAAATTCAAAAAAAGGAATCACAGATTTTTGGAATTTCAGAATTTCATAATTTCAAAATTTCAGGATTTCGGAATCTTAAAATTTCAGAATTCCAAAATTTAAGAATTTCAGGATATCGGTATTATAACATTTCAGAATCTTAAAATTTCAGAATCTCAGAATTTAATTTTTTCAAATTTCTGAATTTCTGAAATTTAAATATTTCAGAGTTTCAGAACTTCACACATTCAGAACCTTTAAATTTCAAAATTTCAGACTTCCAGAATTTCAAAATTTCAGTAGTTTAGAATTTCAGGTTTTCAGATTTTCGAGTTTCCGGATTTCAGTATTTCCGGAATTAGAATTTCAGAATTTCAGATTTTCAGAACTTCAGAATTTCTTCAAAAAAGAAATTACCTTTTTCAAAACG</canonical_amplicon>
		<polymorphic_amplicon>GTTTGTTGGATCATTTCAAAGCTGCGACGTCTCATGAGTCTGAAAACTTTGGAAATTCAAAAAAAGGAATCACAGATTTTTGGAATTTCAGAATTTCATAATTTCAAAATTTCAGGATTTCGGAATCTTAAAATTTCAGAATTCCAAAATTTAAGAATTTCAGGATATCGGTATTATAACATTTCAGAATCTTAAAATTTCAGAATCTCAGAATTTMATTTTTTCAAATTTCTGAATTTCTGAAATTTAAATATTTCAGAGTTTCAGAACTTCACACATTCAGAACCTTTAAATTTCAAAATTTCAGACTTCCAGAATTTCAAAATTTCAGTAGTTTAGAATTTCAGGTTTTCAGATTTTCGAGTTTCCGGATTTCAGTATTTCCGGAATTAGAATTTCAGAATTTCAGATTTTCAGAACTTCAGAATTTCTTCAAAAAAGAAATTACCTTTTTCAAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34702</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>995197</contig_pos>
        <strand></strand>
        <context>cagaacttca[C/G]acattcagaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAAATTTCTGAATTTCTGAAATTTAAATATTTCAGAGTTTCAGAACTTCA</left_flank>
        <right_flank>ACATTCAGAACCTTTAAATTTCAAAATTTCAGACTTCCAGAATTTCAAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATCAGTTGTACCACCCTTAAAAACTGAAGACAAAAACGACCCCGTCTCTGCTCGCTAAAGACTCATGAGTCTTAGGGAAGTTTAGGTTCAGTTTTTTTCCCGATAGTTCTGGTTTACACATTTCGAGGCAGACTGACACGGTTTGCCGGTGTGCGCCGACCACGACCAACTGACACAGACCCATATTTCAACGATTTCCGAGAATTCATTTTTGCTCTGGGGGGTTTGTTGGATCATTTCAAAGCTGCGACGTCTCATGAGTCTGAAAACTTTGGAAATTCAAAAAAAGGAATCACAGATTTTTGGAATTTCAGAATTTCATAATTTCAAAATTTCAGGATTTCGGAATCTTAAAATTTCAGAATTCCAAAATTTAAGAATTTCAGGATATCGGTATTATAACATTTCAGAATCTTAAAATTTCAGAATCTCAGAATTTAATTTTTTCAAATTTCTGAATTTCTGAAATTTAAATATTTCAGAGTTTCAGAACTTCACACATTCAGAACCTTTAAATTTCAAAATTTCAGACTTCCAGAATTTCAAAATTTCAGTAGTTTAGAATTTCAGGTTTTCAGATTTTCGAGTTTCCGGATTTCAGTATTTCCGGAATTAGAATTTCAGAATTTCAGATTTTCAGAACTTCAGAATTTCTTCAAAAAAGAAATTACCTTTTTCAAAACGGAGAGCGTTTTCTTTGAATTAGTTGGAATAAATTTAAATACTATTTTATTCATAACCACGTCATCAAAAAAAATTGAAAAACTAGGCGCTCACGTAGACATAACAATTCTTTTCACTTGAAAATTTTAAAATGTGAGAATTTGACCTATTTTTATGAAGGTCCATCTTTTCGACATTGGGTTTGAAATGTTTCAAGAAAAATTCTTCTCGAAAACTTGGGTCATGCCACGAAAATTCGAAAATTCAAATTTCAAGAAAACTATTCATGTTTATGCTCGGTTTTAAGCACTTTTGAGCTGGGAAAATTTATACCC</canonical>
            <polymorphic>TTATCAGTTGTACCACCCTTAAAAACTGAAGACAAAAACGACCCCGTCTCTGCTCGCTAAAGACTCATGAGTCTTAGGGAAGTTTAGGTTCAGTTTTTTTCCCGATAGTTCTGGTTTACACATTTCGAGGCAGACTGACACGGTTTGCCGGTGTGCGCCGACCACGACCAACTGACACAGACCCATATTTCAACGATTTCCGAGAATTCATTTTTGCTCTGGGGGGTTTGTTGGATCATTTCAAAGCTGCGACGTCTCATGAGTCTGAAAACTTTGGAAATTCAAAAAAAGGAATCACAGATTTTTGGAATTTCAGAATTTCATAATTTCAAAATTTCAGGATTTCGGAATCTTAAAATTTCAGAATTCCAAAATTTAAGAATTTCAGGATATCGGTATTATAACATTTCAGAATCTTAAAATTTCAGAATCTCAGAATTTAATTTTTTCAAATTTCTGAATTTCTGAAATTTAAATATTTCAGAGTTTCAGAACTTCASACATTCAGAACCTTTAAATTTCAAAATTTCAGACTTCCAGAATTTCAAAATTTCAGTAGTTTAGAATTTCAGGTTTTCAGATTTTCGAGTTTCCGGATTTCAGTATTTCCGGAATTAGAATTTCAGAATTTCAGATTTTCAGAACTTCAGAATTTCTTCAAAAAAGAAATTACCTTTTTCAAAACGGAGAGCGTTTTCTTTGAATTAGTTGGAATAAATTTAAATACTATTTTATTCATAACCACGTCATCAAAAAAAATTGAAAAACTAGGCGCTCACGTAGACATAACAATTCTTTTCACTTGAAAATTTTAAAATGTGAGAATTTGACCTATTTTTATGAAGGTCCATCTTTTCGACATTGGGTTTGAAATGTTTCAAGAAAAATTCTTCTCGAAAACTTGGGTCATGCCACGAAAATTCGAAAATTCAAATTTCAAGAAAACTATTCATGTTTATGCTCGGTTTTAAGCACTTTTGAGCTGGGAAAATTTATACCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>243 202 120 105 93 60 34 26 23 20 20 15 13 13 9 2 2</canonical_bands>
                <polymorphic_bands>447 120 105 93 60 34 26 23 20 20 15 13 13 9 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTGTTGGATCATTTCAAAG</pcr_primer_p1>
		<pcr_primer_p2>CGTTTTGAAAAAGGTAATTTCT</pcr_primer_p2>
		<pcr_amplicon_size>461</pcr_amplicon_size>
		<canonical_amplicon>GTTTGTTGGATCATTTCAAAGCTGCGACGTCTCATGAGTCTGAAAACTTTGGAAATTCAAAAAAAGGAATCACAGATTTTTGGAATTTCAGAATTTCATAATTTCAAAATTTCAGGATTTCGGAATCTTAAAATTTCAGAATTCCAAAATTTAAGAATTTCAGGATATCGGTATTATAACATTTCAGAATCTTAAAATTTCAGAATCTCAGAATTTAATTTTTTCAAATTTCTGAATTTCTGAAATTTAAATATTTCAGAGTTTCAGAACTTCACACATTCAGAACCTTTAAATTTCAAAATTTCAGACTTCCAGAATTTCAAAATTTCAGTAGTTTAGAATTTCAGGTTTTCAGATTTTCGAGTTTCCGGATTTCAGTATTTCCGGAATTAGAATTTCAGAATTTCAGATTTTCAGAACTTCAGAATTTCTTCAAAAAAGAAATTACCTTTTTCAAAACG</canonical_amplicon>
		<polymorphic_amplicon>GTTTGTTGGATCATTTCAAAGCTGCGACGTCTCATGAGTCTGAAAACTTTGGAAATTCAAAAAAAGGAATCACAGATTTTTGGAATTTCAGAATTTCATAATTTCAAAATTTCAGGATTTCGGAATCTTAAAATTTCAGAATTCCAAAATTTAAGAATTTCAGGATATCGGTATTATAACATTTCAGAATCTTAAAATTTCAGAATCTCAGAATTTAATTTTTTCAAATTTCTGAATTTCTGAAATTTAAATATTTCAGAGTTTCAGAACTTCASACATTCAGAACCTTTAAATTTCAAAATTTCAGACTTCCAGAATTTCAAAATTTCAGTAGTTTAGAATTTCAGGTTTTCAGATTTTCGAGTTTCCGGATTTCAGTATTTCCGGAATTAGAATTTCAGAATTTCAGATTTTCAGAACTTCAGAATTTCTTCAAAAAAGAAATTACCTTTTTCAAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34703</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>996830</contig_pos>
        <strand></strand>
        <context>tccggaatgc[A/G]atcacagaac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGATTTTTCCAGAACGAAACAATATTTTTCTCGATTTTTCCGGAATGC</left_flank>
        <right_flank>ATCACAGAACTGCAAGACTCGGCAGTTCAATTGACACTTTTCGTGTTGAG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGATTTCCGACCTTCATCCCGAACAAAAAACAACAGAAGATGTCCTCGGATCTCCCCTGACAACTCATGCTGCGTCTCTCCATCCTATACGCTATTTCCATCGGCCCATTTCGTAACCGATTGCATGCGTCTCCAGCTCTTCTTCATCTCTCACTGACATCCGGAGCTGTCGTCCATGCGTGCGCGAATTCGTATGGTGTCTGGGTACTCACTCGGCCCGTTTTCTCCCCTCCCTCTAAAGCCATGAAACCTTTTTCCATTTGTCCTTTTCTTTCTATTTGTGCTCTCCCGCTTGGTGGTCCCGTTTTCTTTTATTTTTATTTCGCTTCATATATATCCTTCAGTTTGTATTAGTAGTTAAGATTGATCTGTTTTCAATGGGAAAACCGAATTTCTTAACATTACTTTTTGTTTCGAGTCTCGGTTAAAATCTTATTGTTAGCTACATTCTGATTTTTCCAGAACGAAACAATATTTTTCTCGATTTTTCCGGAATGCAATCACAGAACTGCAAGACTCGGCAGTTCAATTGACACTTTTCGTGTTGAGACCACTGCTAACTTGGTAAATCGGCATTCCAAAAAATAGCCGTGTAGCCACTTGGGTACAAGGCAACGGGTCAGAAATCGCGCCCCAGTAAACGTGAGATTTTAGAAAAAAATTCGCTGCTGAATTATTTGGCTGAGGATCAAACTTTTAAACGCTGCGCGAAAAAATGACGCGTTGCAACTCGTTGATTAAAATTAACTAGATCAAATCCACGTCAACTTTGAAATTATTAAATTTCTATTGGCCTAAAAGTTATTTGGGGCGCGTTTTTTGACCCGTTGTCTTGGACCCAAGTGTGTAGCTAATATACTGTAAACACTCTAATAGAAGGCCACCCTATGCTTCGCTTTGAGATCGAATATCTAAACTTCTATACGAGATCACAAAAATAGGTAAACTGATAAAATGTTTGTCATAATATCATCAACATTTAATCGGTTGACATATTTT</canonical>
            <polymorphic>GAGATTTCCGACCTTCATCCCGAACAAAAAACAACAGAAGATGTCCTCGGATCTCCCCTGACAACTCATGCTGCGTCTCTCCATCCTATACGCTATTTCCATCGGCCCATTTCGTAACCGATTGCATGCGTCTCCAGCTCTTCTTCATCTCTCACTGACATCCGGAGCTGTCGTCCATGCGTGCGCGAATTCGTATGGTGTCTGGGTACTCACTCGGCCCGTTTTCTCCCCTCCCTCTAAAGCCATGAAACCTTTTTCCATTTGTCCTTTTCTTTCTATTTGTGCTCTCCCGCTTGGTGGTCCCGTTTTCTTTTATTTTTATTTCGCTTCATATATATCCTTCAGTTTGTATTAGTAGTTAAGATTGATCTGTTTTCAATGGGAAAACCGAATTTCTTAACATTACTTTTTGTTTCGAGTCTCGGTTAAAATCTTATTGTTAGCTACATTCTGATTTTTCCAGAACGAAACAATATTTTTCTCGATTTTTCCGGAATGCRATCACAGAACTGCAAGACTCGGCAGTTCAATTGACACTTTTCGTGTTGAGACCACTGCTAACTTGGTAAATCGGCATTCCAAAAAATAGCCGTGTAGCCACTTGGGTACAAGGCAACGGGTCAGAAATCGCGCCCCAGTAAACGTGAGATTTTAGAAAAAAATTCGCTGCTGAATTATTTGGCTGAGGATCAAACTTTTAAACGCTGCGCGAAAAAATGACGCGTTGCAACTCGTTGATTAAAATTAACTAGATCAAATCCACGTCAACTTTGAAATTATTAAATTTCTATTGGCCTAAAAGTTATTTGGGGCGCGTTTTTTGACCCGTTGTCTTGGACCCAAGTGTGTAGCTAATATACTGTAAACACTCTAATAGAAGGCCACCCTATGCTTCGCTTTGAGATCGAATATCTAAACTTCTATACGAGATCACAAAAATAGGTAAACTGATAAAATGTTTGTCATAATATCATCAACATTTAATCGGTTGACATATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>374 273 215 124 14</canonical_bands>
                <polymorphic_bands>388 273 215 124</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGCTTCATATATATCCTTCAGTT</pcr_primer_p1>
		<pcr_primer_p2>AATGCCGATTTACCAAGTTAG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CGCTTCATATATATCCTTCAGTTTGTATTAGTAGTTAAGATTGATCTGTTTTCAATGGGAAAACCGAATTTCTTAACATTACTTTTTGTTTCGAGTCTCGGTTAAAATCTTATTGTTAGCTACATTCTGATTTTTCCAGAACGAAACAATATTTTTCTCGATTTTTCCGGAATGCAATCACAGAACTGCAAGACTCGGCAGTTCAATTGACACTTTTCGTGTTGAGACCACTGCTAACTTGGTAAATCGGCATT</canonical_amplicon>
		<polymorphic_amplicon>CGCTTCATATATATCCTTCAGTTTGTATTAGTAGTTAAGATTGATCTGTTTTCAATGGGAAAACCGAATTTCTTAACATTACTTTTTGTTTCGAGTCTCGGTTAAAATCTTATTGTTAGCTACATTCTGATTTTTCCAGAACGAAACAATATTTTTCTCGATTTTTCCGGAATGCRATCACAGAACTGCAAGACTCGGCAGTTCAATTGACACTTTTCGTGTTGAGACCACTGCTAACTTGGTAAATCGGCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34704</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>997083</contig_pos>
        <strand></strand>
        <context>aattaactag[A/G]tcaaatccac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCTGCGCGAAAAAATGACGCGTTGCAACTCGTTGATTAAAATTAACTAG</left_flank>
        <right_flank>TCAAATCCACGTCAACTTTGAAATTATTAAATTTCTATTGGCCTAAAAGT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCCATTTGTCCTTTTCTTTCTATTTGTGCTCTCCCGCTTGGTGGTCCCGTTTTCTTTTATTTTTATTTCGCTTCATATATATCCTTCAGTTTGTATTAGTAGTTAAGATTGATCTGTTTTCAATGGGAAAACCGAATTTCTTAACATTACTTTTTGTTTCGAGTCTCGGTTAAAATCTTATTGTTAGCTACATTCTGATTTTTCCAGAACGAAACAATATTTTTCTCGATTTTTCCGGAATGCAATCACAGAACTGCAAGACTCGGCAGTTCAATTGACACTTTTCGTGTTGAGACCACTGCTAACTTGGTAAATCGGCATTCCAAAAAATAGCCGTGTAGCCACTTGGGTACAAGGCAACGGGTCAGAAATCGCGCCCCAGTAAACGTGAGATTTTAGAAAAAAATTCGCTGCTGAATTATTTGGCTGAGGATCAAACTTTTAAACGCTGCGCGAAAAAATGACGCGTTGCAACTCGTTGATTAAAATTAACTAGATCAAATCCACGTCAACTTTGAAATTATTAAATTTCTATTGGCCTAAAAGTTATTTGGGGCGCGTTTTTTGACCCGTTGTCTTGGACCCAAGTGTGTAGCTAATATACTGTAAACACTCTAATAGAAGGCCACCCTATGCTTCGCTTTGAGATCGAATATCTAAACTTCTATACGAGATCACAAAAATAGGTAAACTGATAAAATGTTTGTCATAATATCATCAACATTTAATCGGTTGACATATTTTTGATATCTCTTATAGAAATTGAGATAATTCAGCTCAAAGTGTAAGTGTGCCTTCTATTAGAGTGTTTATGGTATATTAGCTCAAATATTAGTTTTCACAGAGAAATCTTCATATTTTTTTCAGTTCCCTCATTTCCTGTTAGATTCCTAGAATTTCATTTCCATCATCCTCCATTCTTTGTTCTCAGAAAATCTCTTTAAAAATAATAATCCCAACTCAAAAACCTCCTTTTCCATATTTCAGAGAACTCGTT</canonical>
            <polymorphic>TTTTCCATTTGTCCTTTTCTTTCTATTTGTGCTCTCCCGCTTGGTGGTCCCGTTTTCTTTTATTTTTATTTCGCTTCATATATATCCTTCAGTTTGTATTAGTAGTTAAGATTGATCTGTTTTCAATGGGAAAACCGAATTTCTTAACATTACTTTTTGTTTCGAGTCTCGGTTAAAATCTTATTGTTAGCTACATTCTGATTTTTCCAGAACGAAACAATATTTTTCTCGATTTTTCCGGAATGCAATCACAGAACTGCAAGACTCGGCAGTTCAATTGACACTTTTCGTGTTGAGACCACTGCTAACTTGGTAAATCGGCATTCCAAAAAATAGCCGTGTAGCCACTTGGGTACAAGGCAACGGGTCAGAAATCGCGCCCCAGTAAACGTGAGATTTTAGAAAAAAATTCGCTGCTGAATTATTTGGCTGAGGATCAAACTTTTAAACGCTGCGCGAAAAAATGACGCGTTGCAACTCGTTGATTAAAATTAACTAGRTCAAATCCACGTCAACTTTGAAATTATTAAATTTCTATTGGCCTAAAAGTTATTTGGGGCGCGTTTTTTGACCCGTTGTCTTGGACCCAAGTGTGTAGCTAATATACTGTAAACACTCTAATAGAAGGCCACCCTATGCTTCGCTTTGAGATCGAATATCTAAACTTCTATACGAGATCACAAAAATAGGTAAACTGATAAAATGTTTGTCATAATATCATCAACATTTAATCGGTTGACATATTTTTGATATCTCTTATAGAAATTGAGATAATTCAGCTCAAAGTGTAAGTGTGCCTTCTATTAGAGTGTTTATGGTATATTAGCTCAAATATTAGTTTTCACAGAGAAATCTTCATATTTTTTTCAGTTCCCTCATTTCCTGTTAGATTCCTAGAATTTCATTTCCATCATCCTCCATTCTTTGTTCTCAGAAAATCTCTTTAAAAATAATAATCCCAACTCAAAAACCTCCTTTTCCATATTTCAGAGAACTCGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>325 321 151 113 64 26</canonical_bands>
                <polymorphic_bands>325 321 215 113 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTCGGTTAAAATCTTATTGTTAG</pcr_primer_p1>
		<pcr_primer_p2>TCTGTGAAAACTAATATTTGAGCTA</pcr_primer_p2>
		<pcr_amplicon_size>683</pcr_amplicon_size>
		<canonical_amplicon>GTCTCGGTTAAAATCTTATTGTTAGCTACATTCTGATTTTTCCAGAACGAAACAATATTTTTCTCGATTTTTCCGGAATGCAATCACAGAACTGCAAGACTCGGCAGTTCAATTGACACTTTTCGTGTTGAGACCACTGCTAACTTGGTAAATCGGCATTCCAAAAAATAGCCGTGTAGCCACTTGGGTACAAGGCAACGGGTCAGAAATCGCGCCCCAGTAAACGTGAGATTTTAGAAAAAAATTCGCTGCTGAATTATTTGGCTGAGGATCAAACTTTTAAACGCTGCGCGAAAAAATGACGCGTTGCAACTCGTTGATTAAAATTAACTAGATCAAATCCACGTCAACTTTGAAATTATTAAATTTCTATTGGCCTAAAAGTTATTTGGGGCGCGTTTTTTGACCCGTTGTCTTGGACCCAAGTGTGTAGCTAATATACTGTAAACACTCTAATAGAAGGCCACCCTATGCTTCGCTTTGAGATCGAATATCTAAACTTCTATACGAGATCACAAAAATAGGTAAACTGATAAAATGTTTGTCATAATATCATCAACATTTAATCGGTTGACATATTTTTGATATCTCTTATAGAAATTGAGATAATTCAGCTCAAAGTGTAAGTGTGCCTTCTATTAGAGTGTTTATGGTATATTAGCTCAAATATTAGTTTTCACAGA</canonical_amplicon>
		<polymorphic_amplicon>GTCTCGGTTAAAATCTTATTGTTAGCTACATTCTGATTTTTCCAGAACGAAACAATATTTTTCTCGATTTTTCCGGAATGCAATCACAGAACTGCAAGACTCGGCAGTTCAATTGACACTTTTCGTGTTGAGACCACTGCTAACTTGGTAAATCGGCATTCCAAAAAATAGCCGTGTAGCCACTTGGGTACAAGGCAACGGGTCAGAAATCGCGCCCCAGTAAACGTGAGATTTTAGAAAAAAATTCGCTGCTGAATTATTTGGCTGAGGATCAAACTTTTAAACGCTGCGCGAAAAAATGACGCGTTGCAACTCGTTGATTAAAATTAACTAGRTCAAATCCACGTCAACTTTGAAATTATTAAATTTCTATTGGCCTAAAAGTTATTTGGGGCGCGTTTTTTGACCCGTTGTCTTGGACCCAAGTGTGTAGCTAATATACTGTAAACACTCTAATAGAAGGCCACCCTATGCTTCGCTTTGAGATCGAATATCTAAACTTCTATACGAGATCACAAAAATAGGTAAACTGATAAAATGTTTGTCATAATATCATCAACATTTAATCGGTTGACATATTTTTGATATCTCTTATAGAAATTGAGATAATTCAGCTCAAAGTGTAAGTGTGCCTTCTATTAGAGTGTTTATGGTATATTAGCTCAAATATTAGTTTTCACAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34705</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>1003884</contig_pos>
        <strand>+</strand>
        <context>TGCTTGGTAG[C/T]TGGAGATaga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCAAATAGTGAAGAGAGTGGAGACAGATAGTGTGGAGCGGTGCTTGGTAG</left_flank>
        <right_flank>TGGAGATAGAAGGGGAAGAATACGGAAAAGCGACAAAAAAATGACAGAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGGTGACAAATGGAAGCTCGAACTTTGGATTGTTAAGATCGAGAAGATCGGCTTCACTACGCTGAAAACATAAGTGAGCATAAAGATAGAAATCGATGAATTCGCTCACTCTTTTGGCTCTCACCGCTGCCGGCGCCGGAGCTTCAGCTGGTTGCTCGGCGACTGGAGCAGAATTTGGAGCAACGACTGGGGCAGAAGTTTTCGAAGACTTTTTCGGTACCATGTTGGAGTTTAGAAGCAACCGAAAATTAGTTTAATAGCGATAAGGAAATGTGGTTTTCTGCAAAAACGGTAAAGAGCGAGAGGGGTGTAACAGTATTCGAATTTCCGTTGTTTCGCGGGTCGCTGCGCCTATTCGAAAAACAGTGTTGACATAGACGCAGTTGGAGAAGAAGAAGTATGACGATCAGAGAGTGACCCGTGACAGAAAAAATAATCGATAGATAGAGCAAATAGTGAAGAGAGTGGAGACAGATAGTGTGGAGCGGTGCTTGGTAGCTGGAGATAGAAGGGGAAGAATACGGAAAAGCGACAAAAAAATGACAGAAGAAGAAAAAGAAGAAGGAGTGAAAAGTGATGGAAGGCAAGGAGAGAGTGGGAGTGAGGGAGAGAACATTTTTTGATAGTTGCTTAATAATATCGCATAGGCAGAAGGACAGGCATTCGTTCGCGAGAAACAGTATAAGGGAAAGGGAAATCGATTTTGAGATAACACGGGAAACAGAAGGATACCGTATCCAATGTTATCTTTAGAAAATGCGGATCATTGTTCGGTGTGATTTCTTGCAGAACCCGCCGGTTAATATGGTCATATGCGATTGTTTATCTTCTGTGAAGAAATGTTTATCATTTTTTCTGTTTTAGATATCTAGTCATTTCATTTAACAAGTTGTTTCTAATTGGTCAGTTAAGGACTTTTGGTACATTTAAAACACGGTAAGCACCTGTAATAGAAGGGCCCCTAACTTTAAGAAATGAAAAGGTTGTCAAGTAATAAAT</canonical>
            <polymorphic>TCGGTGACAAATGGAAGCTCGAACTTTGGATTGTTAAGATCGAGAAGATCGGCTTCACTACGCTGAAAACATAAGTGAGCATAAAGATAGAAATCGATGAATTCGCTCACTCTTTTGGCTCTCACCGCTGCCGGCGCCGGAGCTTCAGCTGGTTGCTCGGCGACTGGAGCAGAATTTGGAGCAACGACTGGGGCAGAAGTTTTCGAAGACTTTTTCGGTACCATGTTGGAGTTTAGAAGCAACCGAAAATTAGTTTAATAGCGATAAGGAAATGTGGTTTTCTGCAAAAACGGTAAAGAGCGAGAGGGGTGTAACAGTATTCGAATTTCCGTTGTTTCGCGGGTCGCTGCGCCTATTCGAAAAACAGTGTTGACATAGACGCAGTTGGAGAAGAAGAAGTATGACGATCAGAGAGTGACCCGTGACAGAAAAAATAATCGATAGATAGAGCAAATAGTGAAGAGAGTGGAGACAGATAGTGTGGAGCGGTGCTTGGTAGYTGGAGATAGAAGGGGAAGAATACGGAAAAGCGACAAAAAAATGACAGAAGAAGAAAAAGAAGAAGGAGTGAAAAGTGATGGAAGGCAAGGAGAGAGTGGGAGTGAGGGAGAGAACATTTTTTGATAGTTGCTTAATAATATCGCATAGGCAGAAGGACAGGCATTCGTTCGCGAGAAACAGTATAAGGGAAAGGGAAATCGATTTTGAGATAACACGGGAAACAGAAGGATACCGTATCCAATGTTATCTTTAGAAAATGCGGATCATTGTTCGGTGTGATTTCTTGCAGAACCCGCCGGTTAATATGGTCATATGCGATTGTTTATCTTCTGTGAAGAAATGTTTATCATTTTTTCTGTTTTAGATATCTAGTCATTTCATTTAACAAGTTGTTTCTAATTGGTCAGTTAAGGACTTTTGGTACATTTAAAACACGGTAAGCACCTGTAATAGAAGGGCCCCTAACTTTAAGAAATGAAAAGGTTGTCAAGTAATAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>501 351 125 17 6</canonical_bands>
                <polymorphic_bands>852 125 17 6</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>460 351 66 41 35 24 17 6</canonical_bands>
                <polymorphic_bands>811 66 41 35 24 17 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAGTATGACGATCAGAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>GCGATATTATTAAGCAACTATCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAGTATGACGATCAGAGAGTGACCCGTGACAGAAAAAATAATCGATAGATAGAGCAAATAGTGAAGAGAGTGGAGACAGATAGTGTGGAGCGGTGCTTGGTAGCTGGAGATAGAAGGGGAAGAATACGGAAAAGCGACAAAAAAATGACAGAAGAAGAAAAAGAAGAAGGAGTGAAAAGTGATGGAAGGCAAGGAGAGAGTGGGAGTGAGGGAGAGAACATTTTTTGATAGTTGCTTAATAATATCGC</canonical_amplicon>
		<polymorphic_amplicon>AGAAGTATGACGATCAGAGAGTGACCCGTGACAGAAAAAATAATCGATAGATAGAGCAAATAGTGAAGAGAGTGGAGACAGATAGTGTGGAGCGGTGCTTGGTAGYTGGAGATAGAAGGGGAAGAATACGGAAAAGCGACAAAAAAATGACAGAAGAAGAAAAAGAAGAAGGAGTGAAAAGTGATGGAAGGCAAGGAGAGAGTGGGAGTGAGGGAGAGAACATTTTTTGATAGTTGCTTAATAATATCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34706</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>1003929</contig_pos>
        <strand></strand>
        <context>aaaaaaatga[C/A]agaagaagaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GGTAGCTGGAGATAGAAGGGGAAGAATACGGAAAAGCGACAAAAAAATGA</left_flank>
        <right_flank>AGAAGAAGAAAAAGAAGAAGGAGTGAAAAGTGATGGAAGGCAAGGAGAGA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATCGGCTTCACTACGCTGAAAACATAAGTGAGCATAAAGATAGAAATCGATGAATTCGCTCACTCTTTTGGCTCTCACCGCTGCCGGCGCCGGAGCTTCAGCTGGTTGCTCGGCGACTGGAGCAGAATTTGGAGCAACGACTGGGGCAGAAGTTTTCGAAGACTTTTTCGGTACCATGTTGGAGTTTAGAAGCAACCGAAAATTAGTTTAATAGCGATAAGGAAATGTGGTTTTCTGCAAAAACGGTAAAGAGCGAGAGGGGTGTAACAGTATTCGAATTTCCGTTGTTTCGCGGGTCGCTGCGCCTATTCGAAAAACAGTGTTGACATAGACGCAGTTGGAGAAGAAGAAGTATGACGATCAGAGAGTGACCCGTGACAGAAAAAATAATCGATAGATAGAGCAAATAGTGAAGAGAGTGGAGACAGATAGTGTGGAGCGGTGCTTGGTAGCTGGAGATAGAAGGGGAAGAATACGGAAAAGCGACAAAAAAATGACAGAAGAAGAAAAAGAAGAAGGAGTGAAAAGTGATGGAAGGCAAGGAGAGAGTGGGAGTGAGGGAGAGAACATTTTTTGATAGTTGCTTAATAATATCGCATAGGCAGAAGGACAGGCATTCGTTCGCGAGAAACAGTATAAGGGAAAGGGAAATCGATTTTGAGATAACACGGGAAACAGAAGGATACCGTATCCAATGTTATCTTTAGAAAATGCGGATCATTGTTCGGTGTGATTTCTTGCAGAACCCGCCGGTTAATATGGTCATATGCGATTGTTTATCTTCTGTGAAGAAATGTTTATCATTTTTTCTGTTTTAGATATCTAGTCATTTCATTTAACAAGTTGTTTCTAATTGGTCAGTTAAGGACTTTTGGTACATTTAAAACACGGTAAGCACCTGTAATAGAAGGGCCCCTAACTTTAAGAAATGAAAAGGTTGTCAAGTAATAAATTGTTTATCGTAATATCGGAAGTTTGTTGTCAGTTGACAAATTTTT</canonical>
            <polymorphic>AGATCGGCTTCACTACGCTGAAAACATAAGTGAGCATAAAGATAGAAATCGATGAATTCGCTCACTCTTTTGGCTCTCACCGCTGCCGGCGCCGGAGCTTCAGCTGGTTGCTCGGCGACTGGAGCAGAATTTGGAGCAACGACTGGGGCAGAAGTTTTCGAAGACTTTTTCGGTACCATGTTGGAGTTTAGAAGCAACCGAAAATTAGTTTAATAGCGATAAGGAAATGTGGTTTTCTGCAAAAACGGTAAAGAGCGAGAGGGGTGTAACAGTATTCGAATTTCCGTTGTTTCGCGGGTCGCTGCGCCTATTCGAAAAACAGTGTTGACATAGACGCAGTTGGAGAAGAAGAAGTATGACGATCAGAGAGTGACCCGTGACAGAAAAAATAATCGATAGATAGAGCAAATAGTGAAGAGAGTGGAGACAGATAGTGTGGAGCGGTGCTTGGTAGCTGGAGATAGAAGGGGAAGAATACGGAAAAGCGACAAAAAAATGAMAGAAGAAGAAAAAGAAGAAGGAGTGAAAAGTGATGGAAGGCAAGGAGAGAGTGGGAGTGAGGGAGAGAACATTTTTTGATAGTTGCTTAATAATATCGCATAGGCAGAAGGACAGGCATTCGTTCGCGAGAAACAGTATAAGGGAAAGGGAAATCGATTTTGAGATAACACGGGAAACAGAAGGATACCGTATCCAATGTTATCTTTAGAAAATGCGGATCATTGTTCGGTGTGATTTCTTGCAGAACCCGCCGGTTAATATGGTCATATGCGATTGTTTATCTTCTGTGAAGAAATGTTTATCATTTTTTCTGTTTTAGATATCTAGTCATTTCATTTAACAAGTTGTTTCTAATTGGTCAGTTAAGGACTTTTGGTACATTTAAAACACGGTAAGCACCTGTAATAGAAGGGCCCCTAACTTTAAGAAATGAAAAGGTTGTCAAGTAATAAATTGTTTATCGTAATATCGGAAGTTTGTTGTCAGTTGACAAATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGTATGACGATCAGAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>GCGATATTATTAAGCAACTATCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAGTATGACGATCAGAGAGTGACCCGTGACAGAAAAAATAATCGATAGATAGAGCAAATAGTGAAGAGAGTGGAGACAGATAGTGTGGAGCGGTGCTTGGTAGCTGGAGATAGAAGGGGAAGAATACGGAAAAGCGACAAAAAAATGACAGAAGAAGAAAAAGAAGAAGGAGTGAAAAGTGATGGAAGGCAAGGAGAGAGTGGGAGTGAGGGAGAGAACATTTTTTGATAGTTGCTTAATAATATCGC</canonical_amplicon>
		<polymorphic_amplicon>AGAAGTATGACGATCAGAGAGTGACCCGTGACAGAAAAAATAATCGATAGATAGAGCAAATAGTGAAGAGAGTGGAGACAGATAGTGTGGAGCGGTGCTTGGTAGCTGGAGATAGAAGGGGAAGAATACGGAAAAGCGACAAAAAAATGAMAGAAGAAGAAAAAGAAGAAGGAGTGAAAAGTGATGGAAGGCAAGGAGAGAGTGGGAGTGAGGGAGAGAACATTTTTTGATAGTTGCTTAATAATATCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34707</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>1031038</contig_pos>
        <strand>+</strand>
        <context>AAATTTATTT[A/G]AGCATTGGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCATCAGCAGCTCATCGGTTTCACTGTTTGTTACAATCTGAAATTTATTT</left_flank>
        <right_flank>AGCATTGGTTGCTGAAGAAAGAGATTAATTTTTACCTGTAGCACTGTGAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAACTGAATCGGACGAAGAGAATTGAGAAAACAAAATTCAAGGAAAGGGGACAACTCGTACTAGACACTGTAGACTTATTGATGGGGATTATCAAGAATTCCATGGGAAAAAATAAGAAAAAAAATCTTCTTGATGCACGAAACAATGGCTTAACATAAAATAATCACTGGAAGAAAGCGAGGATAAGGATCCAATAGGATTTTTGGAAAATAAGGAATGACTGTAAAAATGGTATCCTAAGTTCAATTGAGTGGTTGTGACCGATGGAGAGAGAATTCGGGGAAGAATAGGAATGAAATGGATGTATAAATTAAGAGAAAAAACGGAAAAATATGGCAGTTTGTATGACTTTTTATCAATCATCAGAATCATCTCCTCCATCAATAAGCCTGTAGACGGAACATGATGGCTCTGGCTCCTGAGATACTTCAAACACAAAACAGAGGACCATCAGCAGCTCATCGGTTTCACTGTTTGTTACAATCTGAAATTTATTTGAGCATTGGTTGCTGAAGAAAGAGATTAATTTTTACCTGTAGCACTGTGAAGTTTTCTAGTACGTTGTTCATCGTTTCGATAGCATTCAGCTTCTTCAACTCAGCAATGAACTTCACCATGTAATCGCACATTGGCGAATTGTTGAGCATGAATGAGTATGATCCATCGACTTCGATTGGGAAGTATTGCTGAAAATTTATATAATGTTTCTATTCAGTAATTCATCGGCATTCGACTACAAACCTCAATCTTCTCAACAGCTTGTGAGCCAAATGAGCATGCCATCGTTGACACTTTCAACTGGAATTTCTCACGACTTGCGTACAAAGAATCCACAGCGTATTGGCAGTTTCTGAAAACTATCAGATGAGAAGAAAATTTGAGAGAAAAAAGTGTTTAAAAACTCACTGAACATCATCTGACACGTTGATATTCGCCCAGCACTTGGCCAAGAAGAAGACATCTTTCCTTTCAGCTTTTTCGAAAAGTTCGCGAAGCAG</canonical>
            <polymorphic>TGAACTGAATCGGACGAAGAGAATTGAGAAAACAAAATTCAAGGAAAGGGGACAACTCGTACTAGACACTGTAGACTTATTGATGGGGATTATCAAGAATTCCATGGGAAAAAATAAGAAAAAAAATCTTCTTGATGCACGAAACAATGGCTTAACATAAAATAATCACTGGAAGAAAGCGAGGATAAGGATCCAATAGGATTTTTGGAAAATAAGGAATGACTGTAAAAATGGTATCCTAAGTTCAATTGAGTGGTTGTGACCGATGGAGAGAGAATTCGGGGAAGAATAGGAATGAAATGGATGTATAAATTAAGAGAAAAAACGGAAAAATATGGCAGTTTGTATGACTTTTTATCAATCATCAGAATCATCTCCTCCATCAATAAGCCTGTAGACGGAACATGATGGCTCTGGCTCCTGAGATACTTCAAACACAAAACAGAGGACCATCAGCAGCTCATCGGTTTCACTGTTTGTTACAATCTGAAATTTATTTRAGCATTGGTTGCTGAAGAAAGAGATTAATTTTTACCTGTAGCACTGTGAAGTTTTCTAGTACGTTGTTCATCGTTTCGATAGCATTCAGCTTCTTCAACTCAGCAATGAACTTCACCATGTAATCGCACATTGGCGAATTGTTGAGCATGAATGAGTATGATCCATCGACTTCGATTGGGAAGTATTGCTGAAAATTTATATAATGTTTCTATTCAGTAATTCATCGGCATTCGACTACAAACCTCAATCTTCTCAACAGCTTGTGAGCCAAATGAGCATGCCATCGTTGACACTTTCAACTGGAATTTCTCACGACTTGCGTACAAAGAATCCACAGCGTATTGGCAGTTTCTGAAAACTATCAGATGAGAAGAAAATTTGAGAGAAAAAAGTGTTTAAAAACTCACTGAACATCATCTGACACGTTGATATTCGCCCAGCACTTGGCCAAGAAGAAGACATCTTTCCTTTCAGCTTTTTCGAAAAGTTCGCGAAGCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATATGGCAGTTTGTATGAC</pcr_primer_p1>
		<pcr_primer_p2>GAAACGATGAACAACGTACTAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAATATGGCAGTTTGTATGACTTTTTATCAATCATCAGAATCATCTCCTCCATCAATAAGCCTGTAGACGGAACATGATGGCTCTGGCTCCTGAGATACTTCAAACACAAAACAGAGGACCATCAGCAGCTCATCGGTTTCACTGTTTGTTACAATCTGAAATTTATTTGAGCATTGGTTGCTGAAGAAAGAGATTAATTTTTACCTGTAGCACTGTGAAGTTTTCTAGTACGTTGTTCATCGTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATATGGCAGTTTGTATGACTTTTTATCAATCATCAGAATCATCTCCTCCATCAATAAGCCTGTAGACGGAACATGATGGCTCTGGCTCCTGAGATACTTCAAACACAAAACAGAGGACCATCAGCAGCTCATCGGTTTCACTGTTTGTTACAATCTGAAATTTATTTRAGCATTGGTTGCTGAAGAAAGAGATTAATTTTTACCTGTAGCACTGTGAAGTTTTCTAGTACGTTGTTCATCGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34708</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>1039250</contig_pos>
        <strand></strand>
        <context>cactctaata[A/G]aatgccatcc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAAAAAAGGCCATATTCGTGAATGTGGAAGCTGCCGTAACACTCTAATA</left_flank>
        <right_flank>AATGCCATCCAAACATTAGCATTGAGCCTATATATCTCGGTTCTTGTAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCCTCTCATAACATGGAATTATTCTTCCGGGAACTGGTAAAAACGACCAAAAAGAGAGAAGAGAATAATGGAATGGTATGCAGAAAGAAGAAAAACAAGTGAAGAAATGCAGATGGCAGTAGTCCCTTCCCTTGCGGTCAATCCACCCCTCCGACCACAAACGGACAGATGGTTTTCGAATGGAGTGGATATTGGAAATAGTGTATGAAACGAAGGAGAATTAGACATTTTAGTGGGAGGGGGAGCACATGCTTGTGTATGTGCATAGGAAGGCATACAATCTATCACATTACTGTATTACCTCCCTTTCTGGGAAGCATCGGTCACGACCGGCCAATTCGGGTTCATGGTTCTTTGATAAACTGAATGAGGTGAGAATAAGAGGAAGGAGGGGAGAGGTAATAGGCATGAAGAAGCGGAAAATGGACTGTTTGTATGGTTCGGATGGCAAAAAAAGGCCATATTCGTGAATGTGGAAGCTGCCGTAACACTCTAATAAAATGCCATCCAAACATTAGCATTGAGCCTATATATCTCGGTTCTTGTAAAAGATATCAAAAATTGATTAACTGACAAAACATGTTTGATATTATGATAAAGATTTTGTCTGTTGGCTACTTTTGATATCTTTCACAGGAACCGAGATAAATTGGCTCAAAGTTAAAAATTTTGGGGGGGGGGGCTTCTATTGCCGGTTTCACGGTAAGTATACAATAAGTTTGAAAATGAATGCTGGAGTGTTGGTGGTTTCAAAATCATTTTTCGGTCCGGCTAGAGAGCGTTATCGACATTGTCGACAACTCTCAAGCTAACTTTAGTCTGAATCAAATTTCAAGAAATCTAAATTTCCCATTTTCAAAAAATGGCACTATCGGAATATTTTAGAAGTTCCTTTTAACTTTTCCTAATTACAAAGCTAAATATGATTTCGCCACACAAAGATCATTCAAAAGCGTATCAAAATTTGTCAGACACCTCCTACTACACATCTCATCAATT</canonical>
            <polymorphic>ACCCTCTCATAACATGGAATTATTCTTCCGGGAACTGGTAAAAACGACCAAAAAGAGAGAAGAGAATAATGGAATGGTATGCAGAAAGAAGAAAAACAAGTGAAGAAATGCAGATGGCAGTAGTCCCTTCCCTTGCGGTCAATCCACCCCTCCGACCACAAACGGACAGATGGTTTTCGAATGGAGTGGATATTGGAAATAGTGTATGAAACGAAGGAGAATTAGACATTTTAGTGGGAGGGGGAGCACATGCTTGTGTATGTGCATAGGAAGGCATACAATCTATCACATTACTGTATTACCTCCCTTTCTGGGAAGCATCGGTCACGACCGGCCAATTCGGGTTCATGGTTCTTTGATAAACTGAATGAGGTGAGAATAAGAGGAAGGAGGGGAGAGGTAATAGGCATGAAGAAGCGGAAAATGGACTGTTTGTATGGTTCGGATGGCAAAAAAAGGCCATATTCGTGAATGTGGAAGCTGCCGTAACACTCTAATARAATGCCATCCAAACATTAGCATTGAGCCTATATATCTCGGTTCTTGTAAAAGATATCAAAAATTGATTAACTGACAAAACATGTTTGATATTATGATAAAGATTTTGTCTGTTGGCTACTTTTGATATCTTTCACAGGAACCGAGATAAATTGGCTCAAAGTTAAAAATTTTGGGGGGGGGGGCTTCTATTGCCGGTTTCACGGTAAGTATACAATAAGTTTGAAAATGAATGCTGGAGTGTTGGTGGTTTCAAAATCATTTTTCGGTCCGGCTAGAGAGCGTTATCGACATTGTCGACAACTCTCAAGCTAACTTTAGTCTGAATCAAATTTCAAGAAATCTAAATTTCCCATTTTCAAAAAATGGCACTATCGGAATATTTTAGAAGTTCCTTTTAACTTTTCCTAATTACAAAGCTAAATATGATTTCGCCACACAAAGATCATTCAAAAGCGTATCAAAATTTGTCAGACACCTCCTACTACACATCTCATCAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGGACTGTTTGTATGGTTC</pcr_primer_p1>
		<pcr_primer_p2>GCATTCATTTTCAAACTTATTGTA</pcr_primer_p2>
		<pcr_amplicon_size>313</pcr_amplicon_size>
		<canonical_amplicon>AAATGGACTGTTTGTATGGTTCGGATGGCAAAAAAAGGCCATATTCGTGAATGTGGAAGCTGCCGTAACACTCTAATAAAATGCCATCCAAACATTAGCATTGAGCCTATATATCTCGGTTCTTGTAAAAGATATCAAAAATTGATTAACTGACAAAACATGTTTGATATTATGATAAAGATTTTGTCTGTTGGCTACTTTTGATATCTTTCACAGGAACCGAGATAAATTGGCTCAAAGTTAAAAATTTTGGGGGGGGGGGCTTCTATTGCCGGTTTCACGGTAAGTATACAATAAGTTTGAAAATGAATGC</canonical_amplicon>
		<polymorphic_amplicon>AAATGGACTGTTTGTATGGTTCGGATGGCAAAAAAAGGCCATATTCGTGAATGTGGAAGCTGCCGTAACACTCTAATARAATGCCATCCAAACATTAGCATTGAGCCTATATATCTCGGTTCTTGTAAAAGATATCAAAAATTGATTAACTGACAAAACATGTTTGATATTATGATAAAGATTTTGTCTGTTGGCTACTTTTGATATCTTTCACAGGAACCGAGATAAATTGGCTCAAAGTTAAAAATTTTGGGGGGGGGGGCTTCTATTGCCGGTTTCACGGTAAGTATACAATAAGTTTGAAAATGAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34709</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>1086390</contig_pos>
        <strand>+</strand>
        <context>AGGACAAAGA[A/T]CTACAACTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGATGTTAGTATTGAAAGGAAATCCAATATGTTCTACATAGGACAAAGA</left_flank>
        <right_flank>CTACAACTAAAATATTGGTCCATCATGTTGAAAAAAGATTCTGAATGTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTGGGAACCGATTTGAGATCATCGAAAACAACATTGGATTAGAGGAGAGATTAAATGGAATTGATTTGATTTGTGAAGAAGGAGAAAAAGAACTTTTTTATCAACAACTATGACAACACGACAAGGATAATAGCTTCCATACATTCCAGCCTTCCCAGAGAAACTAAAACTCACATCAATCAAATAATGTTCTTTTTGAAATTCTTCAATTTTGAATAGTGGTTAGTAGGATATAAAGAATGAAAGTGTGTGGAGGACGAGGCAACAAAAAATTGGAGGTGGAGAGAGTGGCGGATTGCGAAACCGAACTCTAAATCTCTCCTTTTATATTATTTCTCTTTTTTTAAGCTTCTCCTGCTCTGAGCCGTCCGTTTCTATAGAAACTCTTTGGAATGGGAAAAGAGCCAAACGGCTGAATGACGCACGTGCAAGAATGTAGTTCTATGATGATGTTAGTATTGAAAGGAAATCCAATATGTTCTACATAGGACAAAGAACTACAACTAAAATATTGGTCCATCATGTTGAAAAAAGATTCTGAATGTCATGTCATTTCATGTTCTGACAAGTTTCTCGTGCCACCTGAGCAGGAGGGCGGTGATAAAATGAGTGATAAGAGACGCAGCAGCTTCTCTCAAGAAATGAGTCAATTTTTCTTTTTTTTTTCAGAGGGGAAGGGGCGGAAAAGAAAGCACTTCATCATTTTTGACTCACAATGGAGCATTGAACGGTGTGCGCTTTTGTGAAAAATGCCGCGTCATGTTCAGAATCTTTGAAATTCAGAAAGTTCAAAATGATTCACTGGAAATGGTCGAAAATCTGTTTCACTATATATTGTGTCATTTGATACTCACACGAAGAGATAGAAATAGTGTGAAAACTGGCAAAAACAGATTAACGGATCACCGATATCGGGTGAAAAAGACAATGAAAAGAACAGAGGAAGTGGGTGTTGGAACTTTTGAAAAAGTAGATGAGTTTGGGAAACGAGTAATAT</canonical>
            <polymorphic>TAATTGGGAACCGATTTGAGATCATCGAAAACAACATTGGATTAGAGGAGAGATTAAATGGAATTGATTTGATTTGTGAAGAAGGAGAAAAAGAACTTTTTTATCAACAACTATGACAACACGACAAGGATAATAGCTTCCATACATTCCAGCCTTCCCAGAGAAACTAAAACTCACATCAATCAAATAATGTTCTTTTTGAAATTCTTCAATTTTGAATAGTGGTTAGTAGGATATAAAGAATGAAAGTGTGTGGAGGACGAGGCAACAAAAAATTGGAGGTGGAGAGAGTGGCGGATTGCGAAACCGAACTCTAAATCTCTCCTTTTATATTATTTCTCTTTTTTTAAGCTTCTCCTGCTCTGAGCCGTCCGTTTCTATAGAAACTCTTTGGAATGGGAAAAGAGCCAAACGGCTGAATGACGCACGTGCAAGAATGTAGTTCTATGATGATGTTAGTATTGAAAGGAAATCCAATATGTTCTACATAGGACAAAGAWCTACAACTAAAATATTGGTCCATCATGTTGAAAAAAGATTCTGAATGTCATGTCATTTCATGTTCTGACAAGTTTCTCGTGCCACCTGAGCAGGAGGGCGGTGATAAAATGAGTGATAAGAGACGCAGCAGCTTCTCTCAAGAAATGAGTCAATTTTTCTTTTTTTTTTCAGAGGGGAAGGGGCGGAAAAGAAAGCACTTCATCATTTTTGACTCACAATGGAGCATTGAACGGTGTGCGCTTTTGTGAAAAATGCCGCGTCATGTTCAGAATCTTTGAAATTCAGAAAGTTCAAAATGATTCACTGGAAATGGTCGAAAATCTGTTTCACTATATATTGTGTCATTTGATACTCACACGAAGAGATAGAAATAGTGTGAAAACTGGCAAAAACAGATTAACGGATCACCGATATCGGGTGAAAAAGACAATGAAAAGAACAGAGGAAGTGGGTGTTGGAACTTTTGAAAAAGTAGATGAGTTTGGGAAACGAGTAATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCGAACTCTAAATCTCTCCT</pcr_primer_p1>
		<pcr_primer_p2>GACATGACATTCAGAATCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACCGAACTCTAAATCTCTCCTTTTATATTATTTCTCTTTTTTTAAGCTTCTCCTGCTCTGAGCCGTCCGTTTCTATAGAAACTCTTTGGAATGGGAAAAGAGCCAAACGGCTGAATGACGCACGTGCAAGAATGTAGTTCTATGATGATGTTAGTATTGAAAGGAAATCCAATATGTTCTACATAGGACAAAGAACTACAACTAAAATATTGGTCCATCATGTTGAAAAAAGATTCTGAATGTCATGTC</canonical_amplicon>
		<polymorphic_amplicon>AACCGAACTCTAAATCTCTCCTTTTATATTATTTCTCTTTTTTTAAGCTTCTCCTGCTCTGAGCCGTCCGTTTCTATAGAAACTCTTTGGAATGGGAAAAGAGCCAAACGGCTGAATGACGCACGTGCAAGAATGTAGTTCTATGATGATGTTAGTATTGAAAGGAAATCCAATATGTTCTACATAGGACAAAGAWCTACAACTAAAATATTGGTCCATCATGTTGAAAAAAGATTCTGAATGTCATGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34710</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>1091210</contig_pos>
        <strand></strand>
        <context>gatatcaaaa[T/C]catttcaact</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCCCTAACTTCAAGCCATATTTTTCTCAGTTACTGTAGAAGATATCAAAA</left_flank>
        <right_flank>CATTTCAACTAAAAAAATGTTTATAATAATATCAAATATATTTTGTTAGT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAAGTGGGCGAAAAGTGGAAAATGAGTGGTAGGATGAGGCAGGATGAAGTATAATTTGAGGCGGATTGAGGACATTTATCCAAATTCCACTTTACGAAAAAAAAACATTTGACTTCTTTTCAGTTGAAGCAAAAGATAAATGTATCCTAGTACAAATGAAATGCGAACGTGTTGCTCTCGGAGACCGCCTTTTGTTGTTATGTGAACAAGGCTCAAGTTACTTGTACGGAAAGAGAAATAGTGTTGGAGACGAAGAGACGCAGATGAAATGTGCAGGTAGAAGACAAGATTCAATGTGTACTCGAGTGAACAGAGCATTAGATTGTATGGAGAATCGGAGGAAAATGAATAAAATATGAAATTGAATATATGTTTTATGTGTATGCAGATGACTCAACTTTTGGGAACTTTGTTACAATAACCCACTTATAACCTGTAATAGAAGTGCCCCTAACTTCAAGCCATATTTTTCTCAGTTACTGTAGAAGATATCAAAATCATTTCAACTAAAAAAATGTTTATAATAATATCAAATATATTTTGTTAGTTGAAAACTTTTCGATATCTGTCACAGGAACCGAGATAAATCCGCTCAAAGTTAAAAGTTAGGGTGCCCTTCTATTAGAGGTTTAAGGTATTTATTTTTCATATAGAAACATGAAAATTTACGTCTCGTTTCTAGGGGTCCCTAAACCAAATTCTGAAAAAATAAAACTGTTCAAAAGGACTGTAGAACATGAGCAAACATATACTACAGTTGTTTTCGTGTTATTTTTGAATTGCCACTCAAAAACACACCTTCCCAAAAATATCAGTTTAATCCGTCATGTAAATATGAACAGTGTTCCTCATTAGTTAGCCAAATATTAGCTTCAAAGTCAAAAAATATTTTGGTGAAGCCGAAAAAAAACTAAAAACACACCTCTCTGGCTGGCGACTCATACACGTCGGTCATGATGACGATGTCGCCGTGATACTGATGAATCTCGTCCTGGAAC</canonical>
            <polymorphic>ATGAAGTGGGCGAAAAGTGGAAAATGAGTGGTAGGATGAGGCAGGATGAAGTATAATTTGAGGCGGATTGAGGACATTTATCCAAATTCCACTTTACGAAAAAAAAACATTTGACTTCTTTTCAGTTGAAGCAAAAGATAAATGTATCCTAGTACAAATGAAATGCGAACGTGTTGCTCTCGGAGACCGCCTTTTGTTGTTATGTGAACAAGGCTCAAGTTACTTGTACGGAAAGAGAAATAGTGTTGGAGACGAAGAGACGCAGATGAAATGTGCAGGTAGAAGACAAGATTCAATGTGTACTCGAGTGAACAGAGCATTAGATTGTATGGAGAATCGGAGGAAAATGAATAAAATATGAAATTGAATATATGTTTTATGTGTATGCAGATGACTCAACTTTTGGGAACTTTGTTACAATAACCCACTTATAACCTGTAATAGAAGTGCCCCTAACTTCAAGCCATATTTTTCTCAGTTACTGTAGAAGATATCAAAAYCATTTCAACTAAAAAAATGTTTATAATAATATCAAATATATTTTGTTAGTTGAAAACTTTTCGATATCTGTCACAGGAACCGAGATAAATCCGCTCAAAGTTAAAAGTTAGGGTGCCCTTCTATTAGAGGTTTAAGGTATTTATTTTTCATATAGAAACATGAAAATTTACGTCTCGTTTCTAGGGGTCCCTAAACCAAATTCTGAAAAAATAAAACTGTTCAAAAGGACTGTAGAACATGAGCAAACATATACTACAGTTGTTTTCGTGTTATTTTTGAATTGCCACTCAAAAACACACCTTCCCAAAAATATCAGTTTAATCCGTCATGTAAATATGAACAGTGTTCCTCATTAGTTAGCCAAATATTAGCTTCAAAGTCAAAAAATATTTTGGTGAAGCCGAAAAAAAACTAAAAACACACCTCTCTGGCTGGCGACTCATACACGTCGGTCATGATGACGATGTCGCCGTGATACTGATGAATCTCGTCCTGGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTTTGTTACAATAACCCACTTAT</pcr_primer_p1>
		<pcr_primer_p2>GAGACGTAAATTTTCATGTTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>AACTTTGTTACAATAACCCACTTATAACCTGTAATAGAAGTGCCCCTAACTTCAAGCCATATTTTTCTCAGTTACTGTAGAAGATATCAAAATCATTTCAACTAAAAAAATGTTTATAATAATATCAAATATATTTTGTTAGTTGAAAACTTTTCGATATCTGTCACAGGAACCGAGATAAATCCGCTCAAAGTTAAAAGTTAGGGTGCCCTTCTATTAGAGGTTTAAGGTATTTATTTTTCATATAGAAACATGAAAATTTACGTCTC</canonical_amplicon>
		<polymorphic_amplicon>AACTTTGTTACAATAACCCACTTATAACCTGTAATAGAAGTGCCCCTAACTTCAAGCCATATTTTTCTCAGTTACTGTAGAAGATATCAAAAYCATTTCAACTAAAAAAATGTTTATAATAATATCAAATATATTTTGTTAGTTGAAAACTTTTCGATATCTGTCACAGGAACCGAGATAAATCCGCTCAAAGTTAAAAGTTAGGGTGCCCTTCTATTAGAGGTTTAAGGTATTTATTTTTCATATAGAAACATGAAAATTTACGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34711</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>1118629</contig_pos>
        <strand>+</strand>
        <context>CCTGAACTTT[C/T]AAAACTCCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAACAGGTACTGCAGATCAAAATTTCCAGGTACTCTGCTCCTGAACTTT</left_flank>
        <right_flank>AAAACTCCTGTTTTTCTCTTTTCGCTTTAATATCAAACCGCCCTATGCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATGGAAAGAATAGTATTGTAACATCCTTATTATCTAACTTTAAACACATTTCGTTTCGGTTCAGCTCGAAAATTATGACTTTTGATACAAATGACATGAATGGATAGAGCATTCAATTTAAAGTAATGTGTCAAAAAATGAACATTTTTTGAATAGTTGAGAAATTCTAGTTCAAAGTCGTTTTCCTCTAAAAAACAGGAAAGCTATTTACAAATGAGAAAAAGATTTTCAGTACATTTTCACGCTTCCATTTACCTTTTGGTAAATGATTCAGTTGATTTTTTGAGGGAATTTTCAAATAACTCTGTAAAAGCAAAGTTTTCAACCTAGATCTGTTTTACATCCTCCGCAATTTTCAGAGTGATCGGACACTTGTCCAGCTCCAGACTCCTGAAATTGTTCAAAATGACCGAAAATCAACTGAAAAATACGTTTTTGTATATCTCATAAACAGGTACTGCAGATCAAAATTTCCAGGTACTCTGCTCCTGAACTTTCAAAACTCCTGTTTTTCTCTTTTCGCTTTAATATCAAACCGCCCTATGCAAACATTTTGCAAGCAATAGTTTCGCTACTCACAAATAGAAATATTACGAATAGCATCCATCCATTTTTCATATTTCTCCGGATTCATTTTATGAATAGCCCATTTCCCCCATCTCCCAGCATTCCCACGAGCTCTATCAATTTCTTCATCGCCTTCTAGTCTTTTTTCACCCAATTTTTCATTCAATTTCCCTTCGTTTACCCTCCCCGCCCCATCCATTTTGCCAGATTAAAATCTATGCTCTTTTTCTCACTCGATTTTCCCTGGGTTGTGCATTCCTTAGCAGATCTTCTTCTGCTCCTTCGTTTTTTGCCGATTTCTCTGTTAGCATTTTAATTGAAAACAGATGCGCTTTGTTTTTTTGTTGAAAAGAAAATAGAAACATTTAAATTTAGTTGAACAATTTTTCAGTTGAAAGTTATGGTCTGAAAATCGTATTTTAAAACAAAAA</canonical>
            <polymorphic>GTATGGAAAGAATAGTATTGTAACATCCTTATTATCTAACTTTAAACACATTTCGTTTCGGTTCAGCTCGAAAATTATGACTTTTGATACAAATGACATGAATGGATAGAGCATTCAATTTAAAGTAATGTGTCAAAAAATGAACATTTTTTGAATAGTTGAGAAATTCTAGTTCAAAGTCGTTTTCCTCTAAAAAACAGGAAAGCTATTTACAAATGAGAAAAAGATTTTCAGTACATTTTCACGCTTCCATTTACCTTTTGGTAAATGATTCAGTTGATTTTTTGAGGGAATTTTCAAATAACTCTGTAAAAGCAAAGTTTTCAACCTAGATCTGTTTTACATCCTCCGCAATTTTCAGAGTGATCGGACACTTGTCCAGCTCCAGACTCCTGAAATTGTTCAAAATGACCGAAAATCAACTGAAAAATACGTTTTTGTATATCTCATAAACAGGTACTGCAGATCAAAATTTCCAGGTACTCTGCTCCTGAACTTTYAAAACTCCTGTTTTTCTCTTTTCGCTTTAATATCAAACCGCCCTATGCAAACATTTTGCAAGCAATAGTTTCGCTACTCACAAATAGAAATATTACGAATAGCATCCATCCATTTTTCATATTTCTCCGGATTCATTTTATGAATAGCCCATTTCCCCCATCTCCCAGCATTCCCACGAGCTCTATCAATTTCTTCATCGCCTTCTAGTCTTTTTTCACCCAATTTTTCATTCAATTTCCCTTCGTTTACCCTCCCCGCCCCATCCATTTTGCCAGATTAAAATCTATGCTCTTTTTCTCACTCGATTTTCCCTGGGTTGTGCATTCCTTAGCAGATCTTCTTCTGCTCCTTCGTTTTTTGCCGATTTCTCTGTTAGCATTTTAATTGAAAACAGATGCGCTTTGTTTTTTTGTTGAAAAGAAAATAGAAACATTTAAATTTAGTTGAACAATTTTTCAGTTGAAAGTTATGGTCTGAAAATCGTATTTTAAAACAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGAAATTCGAACATTCATATAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTGTGAGTAGCGAAACTATTG</pcr_primer_p2>
		<pcr_amplicon_size>919</pcr_amplicon_size>
		<canonical_amplicon>TCAAAACTCCTGTTTTTCTCTTTTCGCTTTAATATCAAACCGCCCTATGCAAACATTTTGCAAGCAATAGTTTCGCTACTCACAAAT</canonical_amplicon>
		<polymorphic_amplicon>TYAAAACTCCTGTTTTTCTCTTTTCGCTTTAATATCAAACCGCCCTATGCAAACATTTTGCAAGCAATAGTTTCGCTACTCACAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34712</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>1118640</contig_pos>
        <strand>+</strand>
        <context>AAAACTCCTG[A/C]TTTTCTCTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCAGATCAAAATTTCCAGGTACTCTGCTCCTGAACTTTCAAAACTCCTG</left_flank>
        <right_flank>TTTTCTCTTTTCGCTTTAATATCAAACCGCCCTATGCAAACATTTTGCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGTATTGTAACATCCTTATTATCTAACTTTAAACACATTTCGTTTCGGTTCAGCTCGAAAATTATGACTTTTGATACAAATGACATGAATGGATAGAGCATTCAATTTAAAGTAATGTGTCAAAAAATGAACATTTTTTGAATAGTTGAGAAATTCTAGTTCAAAGTCGTTTTCCTCTAAAAAACAGGAAAGCTATTTACAAATGAGAAAAAGATTTTCAGTACATTTTCACGCTTCCATTTACCTTTTGGTAAATGATTCAGTTGATTTTTTGAGGGAATTTTCAAATAACTCTGTAAAAGCAAAGTTTTCAACCTAGATCTGTTTTACATCCTCCGCAATTTTCAGAGTGATCGGACACTTGTCCAGCTCCAGACTCCTGAAATTGTTCAAAATGACCGAAAATCAACTGAAAAATACGTTTTTGTATATCTCATAAACAGGTACTGCAGATCAAAATTTCCAGGTACTCTGCTCCTGAACTTTCAAAACTCCTGTTTTTCTCTTTTCGCTTTAATATCAAACCGCCCTATGCAAACATTTTGCAAGCAATAGTTTCGCTACTCACAAATAGAAATATTACGAATAGCATCCATCCATTTTTCATATTTCTCCGGATTCATTTTATGAATAGCCCATTTCCCCCATCTCCCAGCATTCCCACGAGCTCTATCAATTTCTTCATCGCCTTCTAGTCTTTTTTCACCCAATTTTTCATTCAATTTCCCTTCGTTTACCCTCCCCGCCCCATCCATTTTGCCAGATTAAAATCTATGCTCTTTTTCTCACTCGATTTTCCCTGGGTTGTGCATTCCTTAGCAGATCTTCTTCTGCTCCTTCGTTTTTTGCCGATTTCTCTGTTAGCATTTTAATTGAAAACAGATGCGCTTTGTTTTTTTGTTGAAAAGAAAATAGAAACATTTAAATTTAGTTGAACAATTTTTCAGTTGAAAGTTATGGTCTGAAAATCGTATTTTAAAACAAAAATGGTTGGTGCA</canonical>
            <polymorphic>ATAGTATTGTAACATCCTTATTATCTAACTTTAAACACATTTCGTTTCGGTTCAGCTCGAAAATTATGACTTTTGATACAAATGACATGAATGGATAGAGCATTCAATTTAAAGTAATGTGTCAAAAAATGAACATTTTTTGAATAGTTGAGAAATTCTAGTTCAAAGTCGTTTTCCTCTAAAAAACAGGAAAGCTATTTACAAATGAGAAAAAGATTTTCAGTACATTTTCACGCTTCCATTTACCTTTTGGTAAATGATTCAGTTGATTTTTTGAGGGAATTTTCAAATAACTCTGTAAAAGCAAAGTTTTCAACCTAGATCTGTTTTACATCCTCCGCAATTTTCAGAGTGATCGGACACTTGTCCAGCTCCAGACTCCTGAAATTGTTCAAAATGACCGAAAATCAACTGAAAAATACGTTTTTGTATATCTCATAAACAGGTACTGCAGATCAAAATTTCCAGGTACTCTGCTCCTGAACTTTCAAAACTCCTGMTTTTCTCTTTTCGCTTTAATATCAAACCGCCCTATGCAAACATTTTGCAAGCAATAGTTTCGCTACTCACAAATAGAAATATTACGAATAGCATCCATCCATTTTTCATATTTCTCCGGATTCATTTTATGAATAGCCCATTTCCCCCATCTCCCAGCATTCCCACGAGCTCTATCAATTTCTTCATCGCCTTCTAGTCTTTTTTCACCCAATTTTTCATTCAATTTCCCTTCGTTTACCCTCCCCGCCCCATCCATTTTGCCAGATTAAAATCTATGCTCTTTTTCTCACTCGATTTTCCCTGGGTTGTGCATTCCTTAGCAGATCTTCTTCTGCTCCTTCGTTTTTTGCCGATTTCTCTGTTAGCATTTTAATTGAAAACAGATGCGCTTTGTTTTTTTGTTGAAAAGAAAATAGAAACATTTAAATTTAGTTGAACAATTTTTCAGTTGAAAGTTATGGTCTGAAAATCGTATTTTAAAACAAAAATGGTTGGTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGAAATTCGAACATTCATATAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTGTGAGTAGCGAAACTATTG</pcr_primer_p2>
		<pcr_amplicon_size>919</pcr_amplicon_size>
		<canonical_amplicon>GTTTTTCTCTTTTCGCTTTAATATCAAACCGCCCTATGCAAACATTTTGCAAGCAATAGTTTCGCTACTCACAAAT</canonical_amplicon>
		<polymorphic_amplicon>GMTTTTCTCTTTTCGCTTTAATATCAAACCGCCCTATGCAAACATTTTGCAAGCAATAGTTTCGCTACTCACAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34713</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>1129826</contig_pos>
        <strand>+</strand>
        <context>AGATCACTTC[A/G]TCTATTCCGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCTGGGCGGCTCCTTTGGCAAACTTCATTTTCCCATTCAAGATCACTTC</left_flank>
        <right_flank>TCTATTCCGGTTGCTGAAATACTAGTTAGCTTTATATTCGTTTTTCATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTGATCTGTTTCAATTTTCGGCCACTCACTTTGTTAAACATAAGATTAGGATATGCAGCTAGTGTTCGGAAATCTTCAATGCCTAAAAGACATATCGCATGACGAACCGTCTTCGATCCACATTTATCCGAATCTCCATATTTCCATTGTGACATTCTAGAGGTTTCATAACTTGTTTTAAGCTCGTAGGGCATTACAAACCTGGATACAAAGTCTGCTTTCTTTCCCTGCTTCAAACATTCATCTGTGAAATGACCAGGCATACCAAGATCTGAGCTAACTTGGAAACTCTGGATAAATTGCTCATCTACTCCGAATCCCTGGAAATAGCTTTTTTTTAGGATAACTACTTTGCGAATCGACTCACTCCTTTGTTCCATTGGTCGATATAAGTTGTCAAATCGGCGGTCCGTACCATCCAATCAACAGCAGCCCTCGATAGAGATCCCTGGGCGGCTCCTTTGGCAAACTTCATTTTCCCATTCAAGATCACTTCGTCTATTCCGGTTGCTGAAATACTAGTTAGCTTTATATTCGTTTTTCATAATCAACATTTTATGAAACCATACCATTTCTAAACATCTTCAATGACTTTGGATCCCATTTGAACTTGTTATCGAGTCTTCCTGCTTCTGGGGTAATCTCCACATCATTTGCCCCACCGAGCCATTCATATACCTGCTCTAACTCATATACGGATTTTGTGATGAGATCATGATTCTGGAGAAGAATCACATAGTTCCATCCAGGTTTATTGATCAGAACTCGCATGCAATTGTAGTGAGCAGAGTTGATATTATGGCCGGCTGAATCCACTGATTCTTCATCTGCAAGAAAAAAATTTCTAGAGAAAGTCGATTTCAAATTTACCAGGAAGTAGTAGAACATTTGGAAGACAAGCTGCCATTACTCTCAATCTCTCGTGGAATTGGGGCGGAGCTTTTTTGTCGATTGCGAAACAAAATGAATTTTGTGGGTGGTAGGACATTTGAATTTG</canonical>
            <polymorphic>AATTTGATCTGTTTCAATTTTCGGCCACTCACTTTGTTAAACATAAGATTAGGATATGCAGCTAGTGTTCGGAAATCTTCAATGCCTAAAAGACATATCGCATGACGAACCGTCTTCGATCCACATTTATCCGAATCTCCATATTTCCATTGTGACATTCTAGAGGTTTCATAACTTGTTTTAAGCTCGTAGGGCATTACAAACCTGGATACAAAGTCTGCTTTCTTTCCCTGCTTCAAACATTCATCTGTGAAATGACCAGGCATACCAAGATCTGAGCTAACTTGGAAACTCTGGATAAATTGCTCATCTACTCCGAATCCCTGGAAATAGCTTTTTTTTAGGATAACTACTTTGCGAATCGACTCACTCCTTTGTTCCATTGGTCGATATAAGTTGTCAAATCGGCGGTCCGTACCATCCAATCAACAGCAGCCCTCGATAGAGATCCCTGGGCGGCTCCTTTGGCAAACTTCATTTTCCCATTCAAGATCACTTCRTCTATTCCGGTTGCTGAAATACTAGTTAGCTTTATATTCGTTTTTCATAATCAACATTTTATGAAACCATACCATTTCTAAACATCTTCAATGACTTTGGATCCCATTTGAACTTGTTATCGAGTCTTCCTGCTTCTGGGGTAATCTCCACATCATTTGCCCCACCGAGCCATTCATATACCTGCTCTAACTCATATACGGATTTTGTGATGAGATCATGATTCTGGAGAAGAATCACATAGTTCCATCCAGGTTTATTGATCAGAACTCGCATGCAATTGTAGTGAGCAGAGTTGATATTATGGCCGGCTGAATCCACTGATTCTTCATCTGCAAGAAAAAAATTTCTAGAGAAAGTCGATTTCAAATTTACCAGGAAGTAGTAGAACATTTGGAAGACAAGCTGCCATTACTCTCAATCTCTCGTGGAATTGGGGCGGAGCTTTTTTGTCGATTGCGAAACAAAATGAATTTTGTGGGTGGTAGGACATTTGAATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGGTCGATATAAGTTGTCAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAGACTCGATAACAAGTTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTGGTCGATATAAGTTGTCAAATCGGCGGTCCGTACCATCCAATCAACAGCAGCCCTCGATAGAGATCCCTGGGCGGCTCCTTTGGCAAACTTCATTTTCCCATTCAAGATCACTTCGTCTATTCCGGTTGCTGAAATACTAGTTAGCTTTATATTCGTTTTTCATAATCAACATTTTATGAAACCATACCATTTCTAAACATCTTCAATGACTTTGGATCCCATTTGAACTTGTTATCGAGTCTTC</canonical_amplicon>
		<polymorphic_amplicon>ATTGGTCGATATAAGTTGTCAAATCGGCGGTCCGTACCATCCAATCAACAGCAGCCCTCGATAGAGATCCCTGGGCGGCTCCTTTGGCAAACTTCATTTTCCCATTCAAGATCACTTCRTCTATTCCGGTTGCTGAAATACTAGTTAGCTTTATATTCGTTTTTCATAATCAACATTTTATGAAACCATACCATTTCTAAACATCTTCAATGACTTTGGATCCCATTTGAACTTGTTATCGAGTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34714</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>1162279</contig_pos>
        <strand>+</strand>
        <context>TTAATCAATG[C/T]CGTGACACTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACTGGATAAAAATTGTTTGATTCTGCTTTGTCACCATTTTAATCAATG</left_flank>
        <right_flank>CGTGACACTCATTAGTTTGGAAAGAAAAGCAAAGAAATCACAGGAATCGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCATCAATAACCTCGCATTATCAGATCTTCCAATCCGTCAAATCCAAATTCTTCGAAATGAAGGCTGAAATCCTGAAAAGACGCGGATTCTACACTCCCGAATCTATTGAAAACCTGATGTCCCTCAGATGGCTTGTCGAGAACCTCGCTGATATTCCAATCCAGAGCTTGTAGTTTCTCAATGGACCGATTTTGCTGAAAAAATTCCACTTTGAGCAATATAACAGCTGCCGATGGTTTTGTGGCTTCCTTGACACCAATCTTCGATTTGAATTTCGCGGCTCACCAAGAAAAATGCTCAATCGCTTATGCAAGTTTTAAAGCACTCTTGATATTTGCAAATAAATTTTGGCTGCTGAAAAAGTCTCGTGAGTACCTTTTTTTTCAGAAAAATCAATCTAAAAATTGAATAATTTTCAGACAATTGACATTCTGGGATTACAATAAAAACTGGATAAAAATTGTTTGATTCTGCTTTGTCACCATTTTAATCAATGCCGTGACACTCATTAGTTTGGAAAGAAAAGCAAAGAAATCACAGGAATCGGAGGAATTGGAAGATTTCAATGAGAAATGAGAGGAGTTTGAGAAGAGAAAGAGAGGACAGTTTATGGGAACTTATTGAATTTTTGGTTTCTTTTTTTTTGGTAAATAAAGTTTTTTGTTTTCTTCATTTTTCATTTTTACTTACATCACAAAATAAGCAGTAAGTTGTTCCAGTTGTTCAGAATCATAAAAAAAAACAAATAAAACAAAAATTTAACGATTTTTTTTGTCTAGAGCTCTTTCAATCTTCCTATTTTTCCAACTTTCGGAATTTCTCATTTTCGGAGTTATTGGAAAACTTTAACTTCTTGAATTTATCAATTTTACAATATCTTGTACACTAAATAAATAAATTTAAACATACATATTACATGCTTTCTACAGTATTCAATATTATTGCTCTGATTTCTTATTCTAAACAAGTGAGAGTTTCAAAATGGGAAGTAATAAAT</canonical>
            <polymorphic>CTTCATCAATAACCTCGCATTATCAGATCTTCCAATCCGTCAAATCCAAATTCTTCGAAATGAAGGCTGAAATCCTGAAAAGACGCGGATTCTACACTCCCGAATCTATTGAAAACCTGATGTCCCTCAGATGGCTTGTCGAGAACCTCGCTGATATTCCAATCCAGAGCTTGTAGTTTCTCAATGGACCGATTTTGCTGAAAAAATTCCACTTTGAGCAATATAACAGCTGCCGATGGTTTTGTGGCTTCCTTGACACCAATCTTCGATTTGAATTTCGCGGCTCACCAAGAAAAATGCTCAATCGCTTATGCAAGTTTTAAAGCACTCTTGATATTTGCAAATAAATTTTGGCTGCTGAAAAAGTCTCGTGAGTACCTTTTTTTTCAGAAAAATCAATCTAAAAATTGAATAATTTTCAGACAATTGACATTCTGGGATTACAATAAAAACTGGATAAAAATTGTTTGATTCTGCTTTGTCACCATTTTAATCAATGYCGTGACACTCATTAGTTTGGAAAGAAAAGCAAAGAAATCACAGGAATCGGAGGAATTGGAAGATTTCAATGAGAAATGAGAGGAGTTTGAGAAGAGAAAGAGAGGACAGTTTATGGGAACTTATTGAATTTTTGGTTTCTTTTTTTTTGGTAAATAAAGTTTTTTGTTTTCTTCATTTTTCATTTTTACTTACATCACAAAATAAGCAGTAAGTTGTTCCAGTTGTTCAGAATCATAAAAAAAAACAAATAAAACAAAAATTTAACGATTTTTTTTGTCTAGAGCTCTTTCAATCTTCCTATTTTTCCAACTTTCGGAATTTCTCATTTTCGGAGTTATTGGAAAACTTTAACTTCTTGAATTTATCAATTTTACAATATCTTGTACACTAAATAAATAAATTTAAACATACATATTACATGCTTTCTACAGTATTCAATATTATTGCTCTGATTTCTTATTCTAAACAAGTGAGAGTTTCAAAATGGGAAGTAATAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAAAAAGTCTCGTGAGTACC</pcr_primer_p1>
		<pcr_primer_p2>GTCCTCTCTTTCTCTTCTCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAAAGTCTCGTGAGTACCTTTTTTTTCAGAAAAATCAATCTAAAAATTGAATAATTTTCAGACAATTGACATTCTGGGATTACAATAAAAACTGGATAAAAATTGTTTGATTCTGCTTTGTCACCATTTTAATCAATGCCGTGACACTCATTAGTTTGGAAAGAAAAGCAAAGAAATCACAGGAATCGGAGGAATTGGAAGATTTCAATGAGAAATGAGAGGAGTTTGAGAAGAGAAAGAGAGGAC</canonical_amplicon>
		<polymorphic_amplicon>CTGAAAAAGTCTCGTGAGTACCTTTTTTTTCAGAAAAATCAATCTAAAAATTGAATAATTTTCAGACAATTGACATTCTGGGATTACAATAAAAACTGGATAAAAATTGTTTGATTCTGCTTTGTCACCATTTTAATCAATGYCGTGACACTCATTAGTTTGGAAAGAAAAGCAAAGAAATCACAGGAATCGGAGGAATTGGAAGATTTCAATGAGAAATGAGAGGAGTTTGAGAAGAGAAAGAGAGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34715</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>1162358</contig_pos>
        <strand>+</strand>
        <context>ATGAGAAATG[A/G]GAGGAGTTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCAAAGAAATCACAGGAATCGGAGGAATTGGAAGATTTCAATGAGAAATG</left_flank>
        <right_flank>GAGGAGTTTGAGAAGAGAAAGAGAGGACAGTTTATGGGAACTTATTGAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGACGCGGATTCTACACTCCCGAATCTATTGAAAACCTGATGTCCCTCAGATGGCTTGTCGAGAACCTCGCTGATATTCCAATCCAGAGCTTGTAGTTTCTCAATGGACCGATTTTGCTGAAAAAATTCCACTTTGAGCAATATAACAGCTGCCGATGGTTTTGTGGCTTCCTTGACACCAATCTTCGATTTGAATTTCGCGGCTCACCAAGAAAAATGCTCAATCGCTTATGCAAGTTTTAAAGCACTCTTGATATTTGCAAATAAATTTTGGCTGCTGAAAAAGTCTCGTGAGTACCTTTTTTTTCAGAAAAATCAATCTAAAAATTGAATAATTTTCAGACAATTGACATTCTGGGATTACAATAAAAACTGGATAAAAATTGTTTGATTCTGCTTTGTCACCATTTTAATCAATGCCGTGACACTCATTAGTTTGGAAAGAAAAGCAAAGAAATCACAGGAATCGGAGGAATTGGAAGATTTCAATGAGAAATGAGAGGAGTTTGAGAAGAGAAAGAGAGGACAGTTTATGGGAACTTATTGAATTTTTGGTTTCTTTTTTTTTGGTAAATAAAGTTTTTTGTTTTCTTCATTTTTCATTTTTACTTACATCACAAAATAAGCAGTAAGTTGTTCCAGTTGTTCAGAATCATAAAAAAAAACAAATAAAACAAAAATTTAACGATTTTTTTTGTCTAGAGCTCTTTCAATCTTCCTATTTTTCCAACTTTCGGAATTTCTCATTTTCGGAGTTATTGGAAAACTTTAACTTCTTGAATTTATCAATTTTACAATATCTTGTACACTAAATAAATAAATTTAAACATACATATTACATGCTTTCTACAGTATTCAATATTATTGCTCTGATTTCTTATTCTAAACAAGTGAGAGTTTCAAAATGGGAAGTAATAAATAAATTATGTCGTAGACTTTGGCACAGGTTTTTGAAAATTTTGGGCAAAGTGCAGAAGATGACTGGCGATTGGGGGAAAC</canonical>
            <polymorphic>AAGACGCGGATTCTACACTCCCGAATCTATTGAAAACCTGATGTCCCTCAGATGGCTTGTCGAGAACCTCGCTGATATTCCAATCCAGAGCTTGTAGTTTCTCAATGGACCGATTTTGCTGAAAAAATTCCACTTTGAGCAATATAACAGCTGCCGATGGTTTTGTGGCTTCCTTGACACCAATCTTCGATTTGAATTTCGCGGCTCACCAAGAAAAATGCTCAATCGCTTATGCAAGTTTTAAAGCACTCTTGATATTTGCAAATAAATTTTGGCTGCTGAAAAAGTCTCGTGAGTACCTTTTTTTTCAGAAAAATCAATCTAAAAATTGAATAATTTTCAGACAATTGACATTCTGGGATTACAATAAAAACTGGATAAAAATTGTTTGATTCTGCTTTGTCACCATTTTAATCAATGCCGTGACACTCATTAGTTTGGAAAGAAAAGCAAAGAAATCACAGGAATCGGAGGAATTGGAAGATTTCAATGAGAAATGRGAGGAGTTTGAGAAGAGAAAGAGAGGACAGTTTATGGGAACTTATTGAATTTTTGGTTTCTTTTTTTTTGGTAAATAAAGTTTTTTGTTTTCTTCATTTTTCATTTTTACTTACATCACAAAATAAGCAGTAAGTTGTTCCAGTTGTTCAGAATCATAAAAAAAAACAAATAAAACAAAAATTTAACGATTTTTTTTGTCTAGAGCTCTTTCAATCTTCCTATTTTTCCAACTTTCGGAATTTCTCATTTTCGGAGTTATTGGAAAACTTTAACTTCTTGAATTTATCAATTTTACAATATCTTGTACACTAAATAAATAAATTTAAACATACATATTACATGCTTTCTACAGTATTCAATATTATTGCTCTGATTTCTTATTCTAAACAAGTGAGAGTTTCAAAATGGGAAGTAATAAATAAATTATGTCGTAGACTTTGGCACAGGTTTTTGAAAATTTTGGGCAAAGTGCAGAAGATGACTGGCGATTGGGGGAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTCACCATTTTAATCAATG</pcr_primer_p1>
		<pcr_primer_p2>TGGAACAACTTACTGCTTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTTGTCACCATTTTAATCAATGCCGTGACACTCATTAGTTTGGAAAGAAAAGCAAAGAAATCACAGGAATCGGAGGAATTGGAAGATTTCAATGAGAAATGAGAGGAGTTTGAGAAGAGAAAGAGAGGACAGTTTATGGGAACTTATTGAATTTTTGGTTTCTTTTTTTTTGGTAAATAAAGTTTTTTGTTTTCTTCATTTTTCATTTTTACTTACATCACAAAATAAGCAGTAAGTTGTTCCA</canonical_amplicon>
		<polymorphic_amplicon>TTTGTCACCATTTTAATCAATGCCGTGACACTCATTAGTTTGGAAAGAAAAGCAAAGAAATCACAGGAATCGGAGGAATTGGAAGATTTCAATGAGAAATGRGAGGAGTTTGAGAAGAGAAAGAGAGGACAGTTTATGGGAACTTATTGAATTTTTGGTTTCTTTTTTTTTGGTAAATAAAGTTTTTTGTTTTCTTCATTTTTCATTTTTACTTACATCACAAAATAAGCAGTAAGTTGTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34716</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>1162686</contig_pos>
        <strand>+</strand>
        <context>ATAAATTTAA[A/C]CATACATATW</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGAATTTATCAATTTTACAATATCTTGTACACTAAATAAATAAATTTAA</left_flank>
        <right_flank>CATACATATTACATGCTTTCTACAGTATTCAATATTATTGCTCTGATTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAATAATTTTCAGACAATTGACATTCTGGGATTACAATAAAAACTGGATAAAAATTGTTTGATTCTGCTTTGTCACCATTTTAATCAATGCCGTGACACTCATTAGTTTGGAAAGAAAAGCAAAGAAATCACAGGAATCGGAGGAATTGGAAGATTTCAATGAGAAATGAGAGGAGTTTGAGAAGAGAAAGAGAGGACAGTTTATGGGAACTTATTGAATTTTTGGTTTCTTTTTTTTTGGTAAATAAAGTTTTTTGTTTTCTTCATTTTTCATTTTTACTTACATCACAAAATAAGCAGTAAGTTGTTCCAGTTGTTCAGAATCATAAAAAAAAACAAATAAAACAAAAATTTAACGATTTTTTTTGTCTAGAGCTCTTTCAATCTTCCTATTTTTCCAACTTTCGGAATTTCTCATTTTCGGAGTTATTGGAAAACTTTAACTTCTTGAATTTATCAATTTTACAATATCTTGTACACTAAATAAATAAATTTAAACATACATATTACATGCTTTCTACAGTATTCAATATTATTGCTCTGATTTCTTATTCTAAACAAGTGAGAGTTTCAAAATGGGAAGTAATAAATAAATTATGTCGTAGACTTTGGCACAGGTTTTTGAAAATTTTGGGCAAAGTGCAGAAGATGACTGGCGATTGGGGGAAACATTTTGAGCTATATTACTATTCACTATTGTCTACAGATTAATTGAACGCTGATCCGAAATCAGCAAAGTTTGCGAATCCGGCTGGTTGGGATGCTTGGCCTTGAGATGGTCTGAAAATTTAAAATTAGATTTTATTACAAAATGGAATTGACATACGCAAAAGGATCGTTGACAGGTGTCTCCCGTGCAGACTTCGGAGGTGCTGGACGTGGTGGGGCGGGTTTAGCAGGAGCAGATGAATTGAATCCGGCGTCGGCAGGGAATCCTCCCTGAGCGAATGGATCAGTTGGAAACGCTGCGTCGAAATGACCAGAGGATCCAAATGGAT</canonical>
            <polymorphic>TTGAATAATTTTCAGACAATTGACATTCTGGGATTACAATAAAAACTGGATAAAAATTGTTTGATTCTGCTTTGTCACCATTTTAATCAATGCCGTGACACTCATTAGTTTGGAAAGAAAAGCAAAGAAATCACAGGAATCGGAGGAATTGGAAGATTTCAATGAGAAATGAGAGGAGTTTGAGAAGAGAAAGAGAGGACAGTTTATGGGAACTTATTGAATTTTTGGTTTCTTTTTTTTTGGTAAATAAAGTTTTTTGTTTTCTTCATTTTTCATTTTTACTTACATCACAAAATAAGCAGTAAGTTGTTCCAGTTGTTCAGAATCATAAAAAAAAACAAATAAAACAAAAATTTAACGATTTTTTTTGTCTAGAGCTCTTTCAATCTTCCTATTTTTCCAACTTTCGGAATTTCTCATTTTCGGAGTTATTGGAAAACTTTAACTTCTTGAATTTATCAATTTTACAATATCTTGTACACTAAATAAATAAATTTAAMCATACATATTACATGCTTTCTACAGTATTCAATATTATTGCTCTGATTTCTTATTCTAAACAAGTGAGAGTTTCAAAATGGGAAGTAATAAATAAATTATGTCGTAGACTTTGGCACAGGTTTTTGAAAATTTTGGGCAAAGTGCAGAAGATGACTGGCGATTGGGGGAAACATTTTGAGCTATATTACTATTCACTATTGTCTACAGATTAATTGAACGCTGATCCGAAATCAGCAAAGTTTGCGAATCCGGCTGGTTGGGATGCTTGGCCTTGAGATGGTCTGAAAATTTAAAATTAGATTTTATTACAAAATGGAATTGACATACGCAAAAGGATCGTTGACAGGTGTCTCCCGTGCAGACTTCGGAGGTGCTGGACGTGGTGGGGCGGGTTTAGCAGGAGCAGATGAATTGAATCCGGCGTCGGCAGGGAATCCTCCCTGAGCGAATGGATCAGTTGGAAACGCTGCGTCGAAATGACCAGAGGATCCAAATGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>497 295 208</canonical_bands>
                <polymorphic_bands>792 208</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGTCTAGAGCTCTTTCAATC</pcr_primer_p1>
		<pcr_primer_p2>GCCAAAGTCTACGACATAATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTGTCTAGAGCTCTTTCAATCTTCCTATTTTTCCAACTTTCGGAATTTCTCATTTTCGGAGTTATTGGAAAACTTTAACTTCTTGAATTTATCAATTTTACAATATCTTGTACACTAAATAAATAAATTTAAACATACATATTACATGCTTTCTACAGTATTCAATATTATTGCTCTGATTTCTTATTCTAAACAAGTGAGAGTTTCAAAATGGGAAGTAATAAATAAATTATGTCGTAGACTTTGGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGTCTAGAGCTCTTTCAATCTTCCTATTTTTCCAACTTTCGGAATTTCTCATTTTCGGAGTTATTGGAAAACTTTAACTTCTTGAATTTATCAATTTTACAATATCTTGTACACTAAATAAATAAATTTAAMCATACATATTACATGCTTTCTACAGTATTCAATATTATTGCTCTGATTTCTTATTCTAAACAAGTGAGAGTTTCAAAATGGGAAGTAATAAATAAATTATGTCGTAGACTTTGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34717</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>1162696</contig_pos>
        <strand>+</strand>
        <context>MCATACATAT[A/T]ACATGCTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAATTTTACAATATCTTGTACACTAAATAAATAAATTTAAACATACATAT</left_flank>
        <right_flank>ACATGCTTTCTACAGTATTCAATATTATTGCTCTGATTTCTTATTCTAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAGACAATTGACATTCTGGGATTACAATAAAAACTGGATAAAAATTGTTTGATTCTGCTTTGTCACCATTTTAATCAATGCCGTGACACTCATTAGTTTGGAAAGAAAAGCAAAGAAATCACAGGAATCGGAGGAATTGGAAGATTTCAATGAGAAATGAGAGGAGTTTGAGAAGAGAAAGAGAGGACAGTTTATGGGAACTTATTGAATTTTTGGTTTCTTTTTTTTTGGTAAATAAAGTTTTTTGTTTTCTTCATTTTTCATTTTTACTTACATCACAAAATAAGCAGTAAGTTGTTCCAGTTGTTCAGAATCATAAAAAAAAACAAATAAAACAAAAATTTAACGATTTTTTTTGTCTAGAGCTCTTTCAATCTTCCTATTTTTCCAACTTTCGGAATTTCTCATTTTCGGAGTTATTGGAAAACTTTAACTTCTTGAATTTATCAATTTTACAATATCTTGTACACTAAATAAATAAATTTAAACATACATATTACATGCTTTCTACAGTATTCAATATTATTGCTCTGATTTCTTATTCTAAACAAGTGAGAGTTTCAAAATGGGAAGTAATAAATAAATTATGTCGTAGACTTTGGCACAGGTTTTTGAAAATTTTGGGCAAAGTGCAGAAGATGACTGGCGATTGGGGGAAACATTTTGAGCTATATTACTATTCACTATTGTCTACAGATTAATTGAACGCTGATCCGAAATCAGCAAAGTTTGCGAATCCGGCTGGTTGGGATGCTTGGCCTTGAGATGGTCTGAAAATTTAAAATTAGATTTTATTACAAAATGGAATTGACATACGCAAAAGGATCGTTGACAGGTGTCTCCCGTGCAGACTTCGGAGGTGCTGGACGTGGTGGGGCGGGTTTAGCAGGAGCAGATGAATTGAATCCGGCGTCGGCAGGGAATCCTCCCTGAGCGAATGGATCAGTTGGAAACGCTGCGTCGAAATGACCAGAGGATCCAAATGGATCTCCTTGAGC</canonical>
            <polymorphic>TTCAGACAATTGACATTCTGGGATTACAATAAAAACTGGATAAAAATTGTTTGATTCTGCTTTGTCACCATTTTAATCAATGCCGTGACACTCATTAGTTTGGAAAGAAAAGCAAAGAAATCACAGGAATCGGAGGAATTGGAAGATTTCAATGAGAAATGAGAGGAGTTTGAGAAGAGAAAGAGAGGACAGTTTATGGGAACTTATTGAATTTTTGGTTTCTTTTTTTTTGGTAAATAAAGTTTTTTGTTTTCTTCATTTTTCATTTTTACTTACATCACAAAATAAGCAGTAAGTTGTTCCAGTTGTTCAGAATCATAAAAAAAAACAAATAAAACAAAAATTTAACGATTTTTTTTGTCTAGAGCTCTTTCAATCTTCCTATTTTTCCAACTTTCGGAATTTCTCATTTTCGGAGTTATTGGAAAACTTTAACTTCTTGAATTTATCAATTTTACAATATCTTGTACACTAAATAAATAAATTTAAACATACATATWACATGCTTTCTACAGTATTCAATATTATTGCTCTGATTTCTTATTCTAAACAAGTGAGAGTTTCAAAATGGGAAGTAATAAATAAATTATGTCGTAGACTTTGGCACAGGTTTTTGAAAATTTTGGGCAAAGTGCAGAAGATGACTGGCGATTGGGGGAAACATTTTGAGCTATATTACTATTCACTATTGTCTACAGATTAATTGAACGCTGATCCGAAATCAGCAAAGTTTGCGAATCCGGCTGGTTGGGATGCTTGGCCTTGAGATGGTCTGAAAATTTAAAATTAGATTTTATTACAAAATGGAATTGACATACGCAAAAGGATCGTTGACAGGTGTCTCCCGTGCAGACTTCGGAGGTGCTGGACGTGGTGGGGCGGGTTTAGCAGGAGCAGATGAATTGAATCCGGCGTCGGCAGGGAATCCTCCCTGAGCGAATGGATCAGTTGGAAACGCTGCGTCGAAATGACCAGAGGATCCAAATGGATCTCCTTGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGTCTAGAGCTCTTTCAATC</pcr_primer_p1>
		<pcr_primer_p2>GCCAAAGTCTACGACATAATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTGTCTAGAGCTCTTTCAATCTTCCTATTTTTCCAACTTTCGGAATTTCTCATTTTCGGAGTTATTGGAAAACTTTAACTTCTTGAATTTATCAATTTTACAATATCTTGTACACTAAATAAATAAATTTAAACATACATATTACATGCTTTCTACAGTATTCAATATTATTGCTCTGATTTCTTATTCTAAACAAGTGAGAGTTTCAAAATGGGAAGTAATAAATAAATTATGTCGTAGACTTTGGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGTCTAGAGCTCTTTCAATCTTCCTATTTTTCCAACTTTCGGAATTTCTCATTTTCGGAGTTATTGGAAAACTTTAACTTCTTGAATTTATCAATTTTACAATATCTTGTACACTAAATAAATAAATTTAAACATACATATWACATGCTTTCTACAGTATTCAATATTATTGCTCTGATTTCTTATTCTAAACAAGTGAGAGTTTCAAAATGGGAAGTAATAAATAAATTATGTCGTAGACTTTGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34718</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>1166558</contig_pos>
        <strand>+</strand>
        <context>GGATACAAAT[G/T]AAATGGATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACCAGATAATACTAAAAAAGGAAAACAACCAAATGAGTTGGGATACAAAT</left_flank>
        <right_flank>AAATGGATTTTGTAAATGAGATCAGAACAAGGCACTGACAACAGTAAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCATCAAATGCGAGTTTATTCATTCGTTGAAGTTGGAAACTCTCGAATCAAAATAAAGCAATTATTCGGTCAGTAAGCGACCAATCCTCGATGACTAATCGTCGCATTTCTCCGTCGCGGTGTTTACACAAATTTTATAGTGCTAACCTTATTTCGTCAAAGTCAATCTTTTTACATATCTCAGGTAAACGATTCTGAATTAGATCTGACTTCATTCGGAATTAGATCTGGGTTCGTTCGTAAATAGAAGTGGCATGATCTAATACAGAATTTAGCTGATCTAATTCCGAACGAACACCGAATGAACTACGAACGAATTAGATCTAATTCCGAACAGGCCGGCGGGATTTCGAAGATTCCTAGCGCGCGCTTTTCAAATTTTGTTTTCTTTTTTATCGCCGGTTGCTTCATTTATGATAAAATTTATTTTAAAAAAAAGGAGAAAAAAACCAGATAATACTAAAAAAGGAAAACAACCAAATGAGTTGGGATACAAATTAAATGGATTTTGTAAATGAGATCAGAACAAGGCACTGACAACAGTAAATGATGAGATAACAGGGAAAAGAATGAAAATGTGATTTAGGGGAAAAAGATAGAAAAAAAGTTGGAAAATGATTAACAAGGAGCCATTGGAGCCGGAGGAAAAGGGTAGAAGAGGGGAGACAAGAGTGGTCTAAGCATCATTGGGTCCACTGGTGCGCTGTTTGCCGATTCTTCGCATGTCTTCTCTTGATTTGTTCCTGAAATATAATTTTTCGGAGTGAATGTAGAATTTATTTTTTCATGTCTCAGTGCACAAGTCGTAGGTTTTTCAATTCAGGCAAGGCAAAACCATTCAGGGTTGATAAAGCATTTGAGACGAATAGTAATTTATTAGCTACGAGGCATCGCAATGATTATTGATAACCAACTTCCTGGAACTTTTTTCAATTTTCAGAAACTCACAATAAGTAGGCCACATGCGCACACCACATTGAGGCCACACTATCCCTAATG</canonical>
            <polymorphic>CTCATCAAATGCGAGTTTATTCATTCGTTGAAGTTGGAAACTCTCGAATCAAAATAAAGCAATTATTCGGTCAGTAAGCGACCAATCCTCGATGACTAATCGTCGCATTTCTCCGTCGCGGTGTTTACACAAATTTTATAGTGCTAACCTTATTTCGTCAAAGTCAATCTTTTTACATATCTCAGGTAAACGATTCTGAATTAGATCTGACTTCATTCGGAATTAGATCTGGGTTCGTTCGTAAATAGAAGTGGCATGATCTAATACAGAATTTAGCTGATCTAATTCCGAACGAACACCGAATGAACTACGAACGAATTAGATCTAATTCCGAACAGGCCGGCGGGATTTCGAAGATTCCTAGCGCGCGCTTTTCAAATTTTGTTTTCTTTTTTATCGCCGGTTGCTTCATTTATGATAAAATTTATTTTAAAAAAAAGGAGAAAAAAACCAGATAATACTAAAAAAGGAAAACAACCAAATGAGTTGGGATACAAATKAAATGGATTTTGTAAATGAGATCAGAACAAGGCACTGACAACAGTAAATGATGAGATAACAGGGAAAAGAATGAAAATGTGATTTAGGGGAAAAAGATAGAAAAAAAGTTGGAAAATGATTAACAAGGAGCCATTGGAGCCGGAGGAAAAGGGTAGAAGAGGGGAGACAAGAGTGGTCTAAGCATCATTGGGTCCACTGGTGCGCTGTTTGCCGATTCTTCGCATGTCTTCTCTTGATTTGTTCCTGAAATATAATTTTTCGGAGTGAATGTAGAATTTATTTTTTCATGTCTCAGTGCACAAGTCGTAGGTTTTTCAATTCAGGCAAGGCAAAACCATTCAGGGTTGATAAAGCATTTGAGACGAATAGTAATTTATTAGCTACGAGGCATCGCAATGATTATTGATAACCAACTTCCTGGAACTTTTTTCAATTTTCAGAAACTCACAATAAGTAGGCCACATGCGCACACCACATTGAGGCCACACTATCCCTAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>430 380 121 69</canonical_bands>
                <polymorphic_bands>430 380 190</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>257 75 71 68 67 61 60 54 51 49 44 43 33 22 21 14 10</canonical_bands>
                <polymorphic_bands>332 71 68 67 61 60 54 51 49 44 43 33 22 21 14 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATGAACTACGAACGAATTAGA</pcr_primer_p1>
		<pcr_primer_p2>CTCATCATTTACTGTTGTCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>GAATGAACTACGAACGAATTAGATCTAATTCCGAACAGGCCGGCGGGATTTCGAAGATTCCTAGCGCGCGCTTTTCAAATTTTGTTTTCTTTTTTATCGCCGGTTGCTTCATTTATGATAAAATTTATTTTAAAAAAAAGGAGAAAAAAACCAGATAATACTAAAAAAGGAAAACAACCAAATGAGTTGGGATACAAATTAAATGGATTTTGTAAATGAGATCAGAACAAGGCACTGACAACAGTAAATGATGAG</canonical_amplicon>
		<polymorphic_amplicon>GAATGAACTACGAACGAATTAGATCTAATTCCGAACAGGCCGGCGGGATTTCGAAGATTCCTAGCGCGCGCTTTTCAAATTTTGTTTTCTTTTTTATCGCCGGTTGCTTCATTTATGATAAAATTTATTTTAAAAAAAAGGAGAAAAAAACCAGATAATACTAAAAAAGGAAAACAACCAAATGAGTTGGGATACAAATKAAATGGATTTTGTAAATGAGATCAGAACAAGGCACTGACAACAGTAAATGATGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34719</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>1266974</contig_pos>
        <strand>+</strand>
        <context>ttattacagg[A/G]tttacggtAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTCGAGGAATCAAGATAACTGAGCTCAAACTTGACTTTTATTACAGG</left_flank>
        <right_flank>TTTACGGTAATTTGAAATTTCAAAATTCAACGCTTCGATAGTGTCAGTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAGTTTCGAAAGCTATTGGCTTTGAAATTCTCACGAAATAACTTTTACCGAAAGATCAAGATTAACACAAAATGAATCACAAAAAGCGCATTATTCCCTAAAGAGAACTTTGAACTCTTTTCAAAGCTTTTCAACCGGAAACCTATTTTGAATAGATGATATGCGAGTGTTAATTAGAAATTTTGAAAACTAAGAAAAATTTATAGAAGATAGCTAAAGACTGAACCTGGATTGAATACAGCTAACAGGGACTATACAAAATTTGTATTTCAAATCTGTTTGAACCGCGTTCTTCACGACATTTTTAATCCGGTATAGTACAGAATACGAAAAATTGTGGTATTCCTTTGTTTTCAAGAAGGGAAACAAATTTCACCCCTAAGACAAAGGATGCCGTGAAATCTGTAATACATAGAGGGACAATCTAACTTCTAACTTTGAGCCAATTTTTCGAGGAATCAAGATAACTGAGCTCAAACTTGACTTTTATTACAGGTTTTACGGTAATTTGAAATTTCAAAATTCAACGCTTCGATAGTGTCAGTGAATTTCAAACGGACGGATCAAAGCAACTGCAAAAAGCGGAACAAAAACGAATAGGACAGGAGGAAGGGACAGCTGATGAGAGAAAAGAAGAAGAAGGACGAAAAGATATATCTTTTCGGTTCAATCGAATTTTTCAAATTCTTTTACTCTTTGTATCGATTCGATCGGAAATTCGGTTAACTGAAAGAAAACAAATGAGAGCGAAAACACAAAAAATAGAAAAGAAAACAATGACACAATGAGATACTGGAATCGCAATTTAATTGACCCTAGTGCCAAAAGCGGAGAGAGAAAGAGAAATAGATTGAATGGTGTTGGGTACGAGAATAGGGATTGACATACAGACAGCAAAAATGGACGATGACGAGTGTCAGCGACCGGTTTCGGAACACACACATCGTCAACGCTACGTCCTCAAAACTTCTTCGTCTTTTTTTTCCATTTTTGCAAT</canonical>
            <polymorphic>TTTCAGTTTCGAAAGCTATTGGCTTTGAAATTCTCACGAAATAACTTTTACCGAAAGATCAAGATTAACACAAAATGAATCACAAAAAGCGCATTATTCCCTAAAGAGAACTTTGAACTCTTTTCAAAGCTTTTCAACCGGAAACCTATTTTGAATAGATGATATGCGAGTGTTAATTAGAAATTTTGAAAACTAAGAAAAATTTATAGAAGATAGCTAAAGACTGAACCTGGATTGAATACAGCTAACAGGGACTATACAAAATTTGTATTTCAAATCTGTTTGAACCGCGTTCTTCACGACATTTTTAATCCGGTATAGTACAGAATACGAAAAATTGTGGTATTCCTTTGTTTTCAAGAAGGGAAACAAATTTCACCCCTAAGACAAAGGATGCCGTGAAATCTGTAATACATAGAGGGACAATCTAACTTCTAACTTTGAGCCAATTTTTCGAGGAATCAAGATAACTGAGCTCAAACTTGACTTTTATTACAGGRTTTACGGTAATTTGAAATTTCAAAATTCAACGCTTCGATAGTGTCAGTGAATTTCAAACGGACGGATCAAAGCAACTGCAAAAAGCGGAACAAAAACGAATAGGACAGGAGGAAGGGACAGCTGATGAGAGAAAAGAAGAAGAAGGACGAAAAGATATATCTTTTCGGTTCAATCGAATTTTTCAAATTCTTTTACTCTTTGTATCGATTCGATCGGAAATTCGGTTAACTGAAAGAAAACAAATGAGAGCGAAAACACAAAAAATAGAAAAGAAAACAATGACACAATGAGATACTGGAATCGCAATTTAATTGACCCTAGTGCCAAAAGCGGAGAGAGAAAGAGAAATAGATTGAATGGTGTTGGGTACGAGAATAGGGATTGACATACAGACAGCAAAAATGGACGATGACGAGTGTCAGCGACCGGTTTCGGAACACACACATCGTCAACGCTACGTCCTCAAAACTTCTTCGTCTTTTTTTTCCATTTTTGCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTGTGGTATTCCTTTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTTGCAGTTGCTTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAATTGTGGTATTCCTTTGTTTTCAAGAAGGGAAACAAATTTCACCCCTAAGACAAAGGATGCCGTGAAATCTGTAATACATAGAGGGACAATCTAACTTCTAACTTTGAGCCAATTTTTCGAGGAATCAAGATAACTGAGCTCAAACTTGACTTTTATTACAGGTTTTACGGTAATTTGAAATTTCAAAATTCAACGCTTCGATAGTGTCAGTGAATTTCAAACGGACGGATCAAAGCAACTGCAAAAAG</canonical_amplicon>
		<polymorphic_amplicon>AAATTGTGGTATTCCTTTGTTTTCAAGAAGGGAAACAAATTTCACCCCTAAGACAAAGGATGCCGTGAAATCTGTAATACATAGAGGGACAATCTAACTTCTAACTTTGAGCCAATTTTTCGAGGAATCAAGATAACTGAGCTCAAACTTGACTTTTATTACAGGRTTTACGGTAATTTGAAATTTCAAAATTCAACGCTTCGATAGTGTCAGTGAATTTCAAACGGACGGATCAAAGCAACTGCAAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34720</snp_id>
        <super_contig>c009300659.Contig1</super_contig>
        <contig_pos>1267021</contig_pos>
        <strand></strand>
        <context>GATAGTGTCA[G/A]TGAATTTCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGGTTTTACGGTAATTTGAAATTTCAAAATTCAACGCTTCGATAGTGTCA</left_flank>
        <right_flank>TGAATTTCAAACGGACGGATCAAAGCAACTGCAAAAAGCGGAACAAAAAC</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACCGAAAGATCAAGATTAACACAAAATGAATCACAAAAAGCGCATTATTCCCTAAAGAGAACTTTGAACTCTTTTCAAAGCTTTTCAACCGGAAACCTATTTTGAATAGATGATATGCGAGTGTTAATTAGAAATTTTGAAAACTAAGAAAAATTTATAGAAGATAGCTAAAGACTGAACCTGGATTGAATACAGCTAACAGGGACTATACAAAATTTGTATTTCAAATCTGTTTGAACCGCGTTCTTCACGACATTTTTAATCCGGTATAGTACAGAATACGAAAAATTGTGGTATTCCTTTGTTTTCAAGAAGGGAAACAAATTTCACCCCTAAGACAAAGGATGCCGTGAAATCTGTAATACATAGAGGGACAATCTAACTTCTAACTTTGAGCCAATTTTTCGAGGAATCAAGATAACTGAGCTCAAACTTGACTTTTATTACAGGTTTTACGGTAATTTGAAATTTCAAAATTCAACGCTTCGATAGTGTCAGTGAATTTCAAACGGACGGATCAAAGCAACTGCAAAAAGCGGAACAAAAACGAATAGGACAGGAGGAAGGGACAGCTGATGAGAGAAAAGAAGAAGAAGGACGAAAAGATATATCTTTTCGGTTCAATCGAATTTTTCAAATTCTTTTACTCTTTGTATCGATTCGATCGGAAATTCGGTTAACTGAAAGAAAACAAATGAGAGCGAAAACACAAAAAATAGAAAAGAAAACAATGACACAATGAGATACTGGAATCGCAATTTAATTGACCCTAGTGCCAAAAGCGGAGAGAGAAAGAGAAATAGATTGAATGGTGTTGGGTACGAGAATAGGGATTGACATACAGACAGCAAAAATGGACGATGACGAGTGTCAGCGACCGGTTTCGGAACACACACATCGTCAACGCTACGTCCTCAAAACTTCTTCGTCTTTTTTTTCCATTTTTGCAATGTGTGTCCTTCCGAAATAATTTTGAATCGGAGAGAAATGGACGGCAG</canonical>
            <polymorphic>TTACCGAAAGATCAAGATTAACACAAAATGAATCACAAAAAGCGCATTATTCCCTAAAGAGAACTTTGAACTCTTTTCAAAGCTTTTCAACCGGAAACCTATTTTGAATAGATGATATGCGAGTGTTAATTAGAAATTTTGAAAACTAAGAAAAATTTATAGAAGATAGCTAAAGACTGAACCTGGATTGAATACAGCTAACAGGGACTATACAAAATTTGTATTTCAAATCTGTTTGAACCGCGTTCTTCACGACATTTTTAATCCGGTATAGTACAGAATACGAAAAATTGTGGTATTCCTTTGTTTTCAAGAAGGGAAACAAATTTCACCCCTAAGACAAAGGATGCCGTGAAATCTGTAATACATAGAGGGACAATCTAACTTCTAACTTTGAGCCAATTTTTCGAGGAATCAAGATAACTGAGCTCAAACTTGACTTTTATTACAGGTTTTACGGTAATTTGAAATTTCAAAATTCAACGCTTCGATAGTGTCARTGAATTTCAAACGGACGGATCAAAGCAACTGCAAAAAGCGGAACAAAAACGAATAGGACAGGAGGAAGGGACAGCTGATGAGAGAAAAGAAGAAGAAGGACGAAAAGATATATCTTTTCGGTTCAATCGAATTTTTCAAATTCTTTTACTCTTTGTATCGATTCGATCGGAAATTCGGTTAACTGAAAGAAAACAAATGAGAGCGAAAACACAAAAAATAGAAAAGAAAACAATGACACAATGAGATACTGGAATCGCAATTTAATTGACCCTAGTGCCAAAAGCGGAGAGAGAAAGAGAAATAGATTGAATGGTGTTGGGTACGAGAATAGGGATTGACATACAGACAGCAAAAATGGACGATGACGAGTGTCAGCGACCGGTTTCGGAACACACACATCGTCAACGCTACGTCCTCAAAACTTCTTCGTCTTTTTTTTCCATTTTTGCAATGTGTGTCCTTCCGAAATAATTTTGAATCGGAGAGAAATGGACGGCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>209 142 127 90 59 56 43 42 39 39 36 27 23 23 21 12 6 2 2 2</canonical_bands>
                <polymorphic_bands>215 142 127 90 59 56 43 42 39 39 36 27 23 23 21 12 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAACAAATTTCACCCCTAAG</pcr_primer_p1>
		<pcr_primer_p2>CCTGTCCTATTCGTTTTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GAAACAAATTTCACCCCTAAGACAAAGGATGCCGTGAAATCTGTAATACATAGAGGGACAATCTAACTTCTAACTTTGAGCCAATTTTTCGAGGAATCAAGATAACTGAGCTCAAACTTGACTTTTATTACAGGTTTTACGGTAATTTGAAATTTCAAAATTCAACGCTTCGATAGTGTCAGTGAATTTCAAACGGACGGATCAAAGCAACTGCAAAAAGCGGAACAAAAACGAATAGGACAGG</canonical_amplicon>
		<polymorphic_amplicon>GAAACAAATTTCACCCCTAAGACAAAGGATGCCGTGAAATCTGTAATACATAGAGGGACAATCTAACTTCTAACTTTGAGCCAATTTTTCGAGGAATCAAGATAACTGAGCTCAAACTTGACTTTTATTACAGGTTTTACGGTAATTTGAAATTTCAAAATTCAACGCTTCGATAGTGTCARTGAATTTCAAACGGACGGATCAAAGCAACTGCAAAAAGCGGAACAAAAACGAATAGGACAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34721</snp_id>
        <super_contig>c009300673.Contig1</super_contig>
        <contig_pos>17467</contig_pos>
        <strand>+</strand>
        <context>ACTTTCAAAA[A/T]TATARGRAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAACTTTCAAAA</left_flank>
        <right_flank>TATAGGAAATTTTGAATTTTCCCGTTTCGATAATCACAAAATAGCAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCAAAATTTCAGAATTTTTTATCTGATTTTGTGGAGTTCCAATATGATTCAAATAATTCTTTAAAAAATAATTAGTGGTTATAGATTCATGTATGGTCCTTTTCCGGAAGAAAAAATGTCAAAAATGGTCATTTTTGAAAGTTTTTTACAGAAAAAATNNNNNNNNNNNTGAGGTTTTTGAATTATAAAAAAAGTTTTATCAGACGAATTCAAAATTCATCCATAGAAAATGTAGAGAAAATAATTGCGGTTTTTTTGAGCTATCGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATGACCATTTTTGACATTTTTTCTTCCGGAAAAGGACCATAGATGAATCTATAACCACTAATTATTTTTTAAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAACTTTCAAAAATATAGGAAATTTTGAATTTTCCCGTTTCGATAATCACAAAATAGCAAAATTTCCCTTTAATTCTGTCCAAAAATCAGCTTTTCAGCACTTCTAGTAGCCGAGATATAGCGCGTTGAAGTTTGGAAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAGCATAATAAGCTTCAAATCGCTATATCTCGGGTTCTAGAGGGCCTAGAAAAGTGGTTTTTGGTGGGATTTCAAGGAAATTCGAGGTATTTTCAGAAGAGTCAAGCAACTTCAGAATTTTCAACGATTTTTGTTTTTGAATTTTTTTTTCCGAAGAATTTTCAAAACTCCATAAAATCGAAAATTGCCTTTTTTCTTTCCAAAATTCAATGTTTTTTTAAAAAAACGCTTTCAAACCCTTTCCAAACCTATTAGTATCAAAAAAAAAAGTGACTCAAAATTTCGAACGACTTTAAAGGGACACCGCCCACTCAATTATAACAAAAACGACTCAACTAA</canonical>
            <polymorphic>TCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCAAAATTTCAGAATTTTTTATCTGATTTTGTGGAGTTCCAATATGATTCAAATAATTCTTTAAAAAATAATTAGTGGTTATAGATTCATGTATGGTCCTTTTCCGGAAGAAAAAATGTCAAAAATGGTCATTTTTGAAAGTTTTTTACAGAAAAAATNNNNNNNNNNNTGAGGTTTTTGAATTATAAAAAAAGTTTTATCAGACGAATTCAAAATTCATCCATAGAAAATGTAGAGAAAATAATTGCGGTTTTTTTGAGCTATCGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATGACCATTTTTGACATTTTTTCTTCCGGAAAAGGACCATAGATGAATCTATAACCACTAATTATTTTTTAAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAACTTTCAAAAWTATAGGAAATTTTGAATTTTCCCGTTTCGATAATCACAAAATAGCAAAATTTCCCTTTAATTCTGTCCAAAAATCAGCTTTTCAGCACTTCTAGTAGCCGAGATATAGCGCGTTGAAGTTTGGAAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAGCATAATAAGCTTCAAATCGCTATATCTCGGGTTCTAGAGGGCCTAGAAAAGTGGTTTTTGGTGGGATTTCAAGGAAATTCGAGGTATTTTCAGAAGAGTCAAGCAACTTCAGAATTTTCAACGATTTTTGTTTTTGAATTTTTTTTTCCGAAGAATTTTCAAAACTCCATAAAATCGAAAATTGCCTTTTTTCTTTCCAAAATTCAATGTTTTTTTAAAAAAACGCTTTCAAACCCTTTCCAAACCTATTAGTATCAAAAAAAAAAGTGACTCAAAATTTCGAACGACTTTAAAGGGACACCGCCCACTCAATTATAACAAAAACGACTCAACTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAAGGACCATAGATGAAT</pcr_primer_p1>
		<pcr_primer_p2>GCTTGACTCTTCTGAAAATACCT</pcr_primer_p2>
		<pcr_amplicon_size>367</pcr_amplicon_size>
		<canonical_amplicon>GGAAAAGGACCATAGATGAATCTATAACCACTAATTATTTTTTAAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAACTTTCAAAAATATAGGAAATTTTGAATTTTCCCGTTTCGATAATCACAAAATAGCAAAATTTCCCTTTAATTCTGTCCAAAAATCAGCTTTTCAGCACTTCTAGTAGCCGAGATATAGCGCGTTGAAGTTTGGAAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAGCATAATAAGCTTCAAATCGCTATATCTCGGGTTCTAGAGGGCCTAGAAAAGTGGTTTTTGGTGGGATTTCAAGGAAATTCGAGGTATTTTCAGAAGAGTCAAGC</canonical_amplicon>
		<polymorphic_amplicon>GGAAAAGGACCATAGATGAATCTATAACCACTAATTATTTTTTAAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAACTTTCAAAAWTATAGGAAATTTTGAATTTTCCCGTTTCGATAATCACAAAATAGCAAAATTTCCCTTTAATTCTGTCCAAAAATCAGCTTTTCAGCACTTCTAGTAGCCGAGATATAGCGCGTTGAAGTTTGGAAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAGCATAATAAGCTTCAAATCGCTATATCTCGGGTTCTAGAGGGCCTAGAAAAGTGGTTTTTGGTGGGATTTCAAGGAAATTCGAGGTATTTTCAGAAGAGTCAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34722</snp_id>
        <super_contig>c009300673.Contig1</super_contig>
        <contig_pos>17472</contig_pos>
        <strand>+</strand>
        <context>CAAAAWTATA[A/G]GRAATTTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAATCATCTTGGAACTCCACAAAATCAGATAAAACTTTCAAAAATATA</left_flank>
        <right_flank>GAAATTTTGAATTTTCCCGTTTCGATAATCACAAAATAGCAAAATTTCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCAAAATTTCAGAATTTTTTATCTGATTTTGTGGAGTTCCAATATGATTCAAATAATTCTTTAAAAAATAATTAGTGGTTATAGATTCATGTATGGTCCTTTTCCGGAAGAAAAAATGTCAAAAATGGTCATTTTTGAAAGTTTTTTACAGAAAAAATNNNNNNNNNNNTGAGGTTTTTGAATTATAAAAAAAGTTTTATCAGACGAATTCAAAATTCATCCATAGAAAATGTAGAGAAAATAATTGCGGTTTTTTTGAGCTATCGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATGACCATTTTTGACATTTTTTCTTCCGGAAAAGGACCATAGATGAATCTATAACCACTAATTATTTTTTAAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAACTTTCAAAAATATAGGAAATTTTGAATTTTCCCGTTTCGATAATCACAAAATAGCAAAATTTCCCTTTAATTCTGTCCAAAAATCAGCTTTTCAGCACTTCTAGTAGCCGAGATATAGCGCGTTGAAGTTTGGAAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAGCATAATAAGCTTCAAATCGCTATATCTCGGGTTCTAGAGGGCCTAGAAAAGTGGTTTTTGGTGGGATTTCAAGGAAATTCGAGGTATTTTCAGAAGAGTCAAGCAACTTCAGAATTTTCAACGATTTTTGTTTTTGAATTTTTTTTTCCGAAGAATTTTCAAAACTCCATAAAATCGAAAATTGCCTTTTTTCTTTCCAAAATTCAATGTTTTTTTAAAAAAACGCTTTCAAACCCTTTCCAAACCTATTAGTATCAAAAAAAAAAGTGACTCAAAATTTCGAACGACTTTAAAGGGACACCGCCCACTCAATTATAACAAAAACGACTCAACTAATTCAG</canonical>
            <polymorphic>AGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCAAAATTTCAGAATTTTTTATCTGATTTTGTGGAGTTCCAATATGATTCAAATAATTCTTTAAAAAATAATTAGTGGTTATAGATTCATGTATGGTCCTTTTCCGGAAGAAAAAATGTCAAAAATGGTCATTTTTGAAAGTTTTTTACAGAAAAAATNNNNNNNNNNNTGAGGTTTTTGAATTATAAAAAAAGTTTTATCAGACGAATTCAAAATTCATCCATAGAAAATGTAGAGAAAATAATTGCGGTTTTTTTGAGCTATCGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATGACCATTTTTGACATTTTTTCTTCCGGAAAAGGACCATAGATGAATCTATAACCACTAATTATTTTTTAAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAACTTTCAAAAATATARGAAATTTTGAATTTTCCCGTTTCGATAATCACAAAATAGCAAAATTTCCCTTTAATTCTGTCCAAAAATCAGCTTTTCAGCACTTCTAGTAGCCGAGATATAGCGCGTTGAAGTTTGGAAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAGCATAATAAGCTTCAAATCGCTATATCTCGGGTTCTAGAGGGCCTAGAAAAGTGGTTTTTGGTGGGATTTCAAGGAAATTCGAGGTATTTTCAGAAGAGTCAAGCAACTTCAGAATTTTCAACGATTTTTGTTTTTGAATTTTTTTTTCCGAAGAATTTTCAAAACTCCATAAAATCGAAAATTGCCTTTTTTCTTTCCAAAATTCAATGTTTTTTTAAAAAAACGCTTTCAAACCCTTTCCAAACCTATTAGTATCAAAAAAAAAAGTGACTCAAAATTTCGAACGACTTTAAAGGGACACCGCCCACTCAATTATAACAAAAACGACTCAACTAATTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTGAATCATCTTGGAACTC</pcr_primer_p1>
		<pcr_primer_p2>GCTTGACTCTTCTGAAAATACCT</pcr_primer_p2>
		<pcr_amplicon_size>317</pcr_amplicon_size>
		<canonical_amplicon>CATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAACTTTCAAAAATATAGGAAATTTTGAATTTTCCCGTTTCGATAATCACAAAATAGCAAAATTTCCCTTTAATTCTGTCCAAAAATCAGCTTTTCAGCACTTCTAGTAGCCGAGATATAGCGCGTTGAAGTTTGGAAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAGCATAATAAGCTTCAAATCGCTATATCTCGGGTTCTAGAGGGCCTAGAAAAGTGGTTTTTGGTGGGATTTCAAGGAAATTCGAGGTATTTTCAGAAGAGTCAAGC</canonical_amplicon>
		<polymorphic_amplicon>CATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAACTTTCAAAAATATARGAAATTTTGAATTTTCCCGTTTCGATAATCACAAAATAGCAAAATTTCCCTTTAATTCTGTCCAAAAATCAGCTTTTCAGCACTTCTAGTAGCCGAGATATAGCGCGTTGAAGTTTGGAAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAGCATAATAAGCTTCAAATCGCTATATCTCGGGTTCTAGAGGGCCTAGAAAAGTGGTTTTTGGTGGGATTTCAAGGAAATTCGAGGTATTTTCAGAAGAGTCAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34723</snp_id>
        <super_contig>c009300673.Contig1</super_contig>
        <contig_pos>17474</contig_pos>
        <strand>+</strand>
        <context>AAAWTATARG[A/G]AATTTTGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATCATCTTGGAACTCCACAAAATCAGATAAAACTTTCAAAAATATAGG</left_flank>
        <right_flank>AATTTTGAATTTTCCCGTTTCGATAATCACAAAATAGCAAAATTTCCCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCAAAATTTCAGAATTTTTTATCTGATTTTGTGGAGTTCCAATATGATTCAAATAATTCTTTAAAAAATAATTAGTGGTTATAGATTCATGTATGGTCCTTTTCCGGAAGAAAAAATGTCAAAAATGGTCATTTTTGAAAGTTTTTTACAGAAAAAATNNNNNNNNNNNTGAGGTTTTTGAATTATAAAAAAAGTTTTATCAGACGAATTCAAAATTCATCCATAGAAAATGTAGAGAAAATAATTGCGGTTTTTTTGAGCTATCGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATGACCATTTTTGACATTTTTTCTTCCGGAAAAGGACCATAGATGAATCTATAACCACTAATTATTTTTTAAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAACTTTCAAAAATATAGGAAATTTTGAATTTTCCCGTTTCGATAATCACAAAATAGCAAAATTTCCCTTTAATTCTGTCCAAAAATCAGCTTTTCAGCACTTCTAGTAGCCGAGATATAGCGCGTTGAAGTTTGGAAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAGCATAATAAGCTTCAAATCGCTATATCTCGGGTTCTAGAGGGCCTAGAAAAGTGGTTTTTGGTGGGATTTCAAGGAAATTCGAGGTATTTTCAGAAGAGTCAAGCAACTTCAGAATTTTCAACGATTTTTGTTTTTGAATTTTTTTTTCCGAAGAATTTTCAAAACTCCATAAAATCGAAAATTGCCTTTTTTCTTTCCAAAATTCAATGTTTTTTTAAAAAAACGCTTTCAAACCCTTTCCAAACCTATTAGTATCAAAAAAAAAAGTGACTCAAAATTTCGAACGACTTTAAAGGGACACCGCCCACTCAATTATAACAAAAACGACTCAACTAATTCAGAT</canonical>
            <polymorphic>AAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCAAAATTTCAGAATTTTTTATCTGATTTTGTGGAGTTCCAATATGATTCAAATAATTCTTTAAAAAATAATTAGTGGTTATAGATTCATGTATGGTCCTTTTCCGGAAGAAAAAATGTCAAAAATGGTCATTTTTGAAAGTTTTTTACAGAAAAAATNNNNNNNNNNNTGAGGTTTTTGAATTATAAAAAAAGTTTTATCAGACGAATTCAAAATTCATCCATAGAAAATGTAGAGAAAATAATTGCGGTTTTTTTGAGCTATCGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATGACCATTTTTGACATTTTTTCTTCCGGAAAAGGACCATAGATGAATCTATAACCACTAATTATTTTTTAAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAACTTTCAAAAATATAGGRAATTTTGAATTTTCCCGTTTCGATAATCACAAAATAGCAAAATTTCCCTTTAATTCTGTCCAAAAATCAGCTTTTCAGCACTTCTAGTAGCCGAGATATAGCGCGTTGAAGTTTGGAAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAGCATAATAAGCTTCAAATCGCTATATCTCGGGTTCTAGAGGGCCTAGAAAAGTGGTTTTTGGTGGGATTTCAAGGAAATTCGAGGTATTTTCAGAAGAGTCAAGCAACTTCAGAATTTTCAACGATTTTTGTTTTTGAATTTTTTTTTCCGAAGAATTTTCAAAACTCCATAAAATCGAAAATTGCCTTTTTTCTTTCCAAAATTCAATGTTTTTTTAAAAAAACGCTTTCAAACCCTTTCCAAACCTATTAGTATCAAAAAAAAAAGTGACTCAAAATTTCGAACGACTTTAAAGGGACACCGCCCACTCAATTATAACAAAAACGACTCAACTAATTCAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>249 194 192 75 68 47 42 37 33 24 17 8 7 7</canonical_bands>
                <polymorphic_bands>256 194 192 75 68 47 42 37 33 24 17 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTTGAATCATCTTGGAACTC</pcr_primer_p1>
		<pcr_primer_p2>GCTTGACTCTTCTGAAAATACCT</pcr_primer_p2>
		<pcr_amplicon_size>317</pcr_amplicon_size>
		<canonical_amplicon>CATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAACTTTCAAAAATATAGGAAATTTTGAATTTTCCCGTTTCGATAATCACAAAATAGCAAAATTTCCCTTTAATTCTGTCCAAAAATCAGCTTTTCAGCACTTCTAGTAGCCGAGATATAGCGCGTTGAAGTTTGGAAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAGCATAATAAGCTTCAAATCGCTATATCTCGGGTTCTAGAGGGCCTAGAAAAGTGGTTTTTGGTGGGATTTCAAGGAAATTCGAGGTATTTTCAGAAGAGTCAAGC</canonical_amplicon>
		<polymorphic_amplicon>CATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAACTTTCAAAAATATAGGRAATTTTGAATTTTCCCGTTTCGATAATCACAAAATAGCAAAATTTCCCTTTAATTCTGTCCAAAAATCAGCTTTTCAGCACTTCTAGTAGCCGAGATATAGCGCGTTGAAGTTTGGAAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAGCATAATAAGCTTCAAATCGCTATATCTCGGGTTCTAGAGGGCCTAGAAAAGTGGTTTTTGGTGGGATTTCAAGGAAATTCGAGGTATTTTCAGAAGAGTCAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34724</snp_id>
        <super_contig>c009300673.Contig1</super_contig>
        <contig_pos>17490</contig_pos>
        <strand>+</strand>
        <context>TGAATTTTCC[C/T]GTTTCGATAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCACAAAATCAGATAAAACTTTCAAAAATATAGGAAATTTTGAATTTTCC</left_flank>
        <right_flank>GTTTCGATAATCACAAAATAGCAAAATTTCCCTTTAATTCTGTCCAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCACAATTGCAGGTCTAAAACCAAAATTTCAGAATTTTTTATCTGATTTTGTGGAGTTCCAATATGATTCAAATAATTCTTTAAAAAATAATTAGTGGTTATAGATTCATGTATGGTCCTTTTCCGGAAGAAAAAATGTCAAAAATGGTCATTTTTGAAAGTTTTTTACAGAAAAAATNNNNNNNNNNNTGAGGTTTTTGAATTATAAAAAAAGTTTTATCAGACGAATTCAAAATTCATCCATAGAAAATGTAGAGAAAATAATTGCGGTTTTTTTGAGCTATCGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATGACCATTTTTGACATTTTTTCTTCCGGAAAAGGACCATAGATGAATCTATAACCACTAATTATTTTTTAAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAACTTTCAAAAATATAGGAAATTTTGAATTTTCCCGTTTCGATAATCACAAAATAGCAAAATTTCCCTTTAATTCTGTCCAAAAATCAGCTTTTCAGCACTTCTAGTAGCCGAGATATAGCGCGTTGAAGTTTGGAAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAGCATAATAAGCTTCAAATCGCTATATCTCGGGTTCTAGAGGGCCTAGAAAAGTGGTTTTTGGTGGGATTTCAAGGAAATTCGAGGTATTTTCAGAAGAGTCAAGCAACTTCAGAATTTTCAACGATTTTTGTTTTTGAATTTTTTTTTCCGAAGAATTTTCAAAACTCCATAAAATCGAAAATTGCCTTTTTTCTTTCCAAAATTCAATGTTTTTTTAAAAAAACGCTTTCAAACCCTTTCCAAACCTATTAGTATCAAAAAAAAAAGTGACTCAAAATTTCGAACGACTTTAAAGGGACACCGCCCACTCAATTATAACAAAAACGACTCAACTAATTCAGATCAATTGGTGCCCCGGT</canonical>
            <polymorphic>GATCACAATTGCAGGTCTAAAACCAAAATTTCAGAATTTTTTATCTGATTTTGTGGAGTTCCAATATGATTCAAATAATTCTTTAAAAAATAATTAGTGGTTATAGATTCATGTATGGTCCTTTTCCGGAAGAAAAAATGTCAAAAATGGTCATTTTTGAAAGTTTTTTACAGAAAAAATNNNNNNNNNNNTGAGGTTTTTGAATTATAAAAAAAGTTTTATCAGACGAATTCAAAATTCATCCATAGAAAATGTAGAGAAAATAATTGCGGTTTTTTTGAGCTATCGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTGTAAAAAACTTTCAAAAATGACCATTTTTGACATTTTTTCTTCCGGAAAAGGACCATAGATGAATCTATAACCACTAATTATTTTTTAAAGAATCATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAACTTTCAAAAATATAGGAAATTTTGAATTTTCCYGTTTCGATAATCACAAAATAGCAAAATTTCCCTTTAATTCTGTCCAAAAATCAGCTTTTCAGCACTTCTAGTAGCCGAGATATAGCGCGTTGAAGTTTGGAAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAGCATAATAAGCTTCAAATCGCTATATCTCGGGTTCTAGAGGGCCTAGAAAAGTGGTTTTTGGTGGGATTTCAAGGAAATTCGAGGTATTTTCAGAAGAGTCAAGCAACTTCAGAATTTTCAACGATTTTTGTTTTTGAATTTTTTTTTCCGAAGAATTTTCAAAACTCCATAAAATCGAAAATTGCCTTTTTTCTTTCCAAAATTCAATGTTTTTTTAAAAAAACGCTTTCAAACCCTTTCCAAACCTATTAGTATCAAAAAAAAAAGTGACTCAAAATTTCGAACGACTTTAAAGGGACACCGCCCACTCAATTATAACAAAAACGACTCAACTAATTCAGATCAATTGGTGCCCCGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCACAAAATCAGATAAAACTT</pcr_primer_p1>
		<pcr_primer_p2>GCTTGACTCTTCTGAAAATACCT</pcr_primer_p2>
		<pcr_amplicon_size>298</pcr_amplicon_size>
		<canonical_amplicon>CTCCACAAAATCAGATAAAACTTTCAAAAATATAGGAAATTTTGAATTTTCCCGTTTCGATAATCACAAAATAGCAAAATTTCCCTTTAATTCTGTCCAAAAATCAGCTTTTCAGCACTTCTAGTAGCCGAGATATAGCGCGTTGAAGTTTGGAAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAGCATAATAAGCTTCAAATCGCTATATCTCGGGTTCTAGAGGGCCTAGAAAAGTGGTTTTTGGTGGGATTTCAAGGAAATTCGAGGTATTTTCAGAAGAGTCAAGC</canonical_amplicon>
		<polymorphic_amplicon>CTCCACAAAATCAGATAAAACTTTCAAAAATATAGGAAATTTTGAATTTTCCYGTTTCGATAATCACAAAATAGCAAAATTTCCCTTTAATTCTGTCCAAAAATCAGCTTTTCAGCACTTCTAGTAGCCGAGATATAGCGCGTTGAAGTTTGGAAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAGCATAATAAGCTTCAAATCGCTATATCTCGGGTTCTAGAGGGCCTAGAAAAGTGGTTTTTGGTGGGATTTCAAGGAAATTCGAGGTATTTTCAGAAGAGTCAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34725</snp_id>
        <super_contig>c009300673.Contig1</super_contig>
        <contig_pos>18038</contig_pos>
        <strand>+</strand>
        <context>GAAAAATCAC[A/G]AATCTCCAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTATAGAATCGGTCAATTTAAACCTATGACACCACAATGGAAAAATCAC</left_flank>
        <right_flank>AATCTCCAAAAAAAAAAGAAGCGAAAAACGAAAAACGATGGATGACTCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCAGCTTTTCAGCACTTCTAGTAGCCGAGATATAGCGCGTTGAAGTTTGGAAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAGCATAATAAGCTTCAAATCGCTATATCTCGGGTTCTAGAGGGCCTAGAAAAGTGGTTTTTGGTGGGATTTCAAGGAAATTCGAGGTATTTTCAGAAGAGTCAAGCAACTTCAGAATTTTCAACGATTTTTGTTTTTGAATTTTTTTTTCCGAAGAATTTTCAAAACTCCATAAAATCGAAAATTGCCTTTTTTCTTTCCAAAATTCAATGTTTTTTTAAAAAAACGCTTTCAAACCCTTTCCAAACCTATTAGTATCAAAAAAAAAAGTGACTCAAAATTTCGAACGACTTTAAAGGGACACCGCCCACTCAATTATAACAAAAACGACTCAACTAATTCAGATCAATTGGTGCCCCGGTATAGAATCGGTCAATTTAAACCTATGACACCACAATGGAAAAATCACGAATCTCCAAAAAAAAAAGAAGCGAAAAACGAAAAACGATGGATGACTCATCGGCGAAAGTTACACAACATAAATGCATCGAAATAGAGTACTTGCTTGAAGTATGCATGCCGTGTCCCTTTAAATTTCCTATACTGTAGTATGGGACATTATTAAAGGGACATGACATTCTCCATTATCACTACATACACTACAATGATAATCTAGAAAAAGGGGGAAAAAGAGAAATTGGATTTTTCTATATTTACGGGAGGAATGAAGAATAGAGAAAGAGAAGAGAAAGTTCACATATATCAATGGATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGCAGAGAAAGAGAGACTTGACCACCAGATTGATTCGTGAGAGATGGAGTGGTGCGGTTTGTATACAAGTCACTTTTACGCTGGTTCTAATAGAAGGGCACCCTATAAATCTTCATTTTATGATTTTCAGCGCTTTTTTTTGTTTTTTTCGACCGCGGTCGACGGCCCC</canonical>
            <polymorphic>AATCAGCTTTTCAGCACTTCTAGTAGCCGAGATATAGCGCGTTGAAGTTTGGAAGGCTAGAGACGCAGACGACGAGACACACTGCGTCTCTAGCATAATAAGCTTCAAATCGCTATATCTCGGGTTCTAGAGGGCCTAGAAAAGTGGTTTTTGGTGGGATTTCAAGGAAATTCGAGGTATTTTCAGAAGAGTCAAGCAACTTCAGAATTTTCAACGATTTTTGTTTTTGAATTTTTTTTTCCGAAGAATTTTCAAAACTCCATAAAATCGAAAATTGCCTTTTTTCTTTCCAAAATTCAATGTTTTTTTAAAAAAACGCTTTCAAACCCTTTCCAAACCTATTAGTATCAAAAAAAAAAGTGACTCAAAATTTCGAACGACTTTAAAGGGACACCGCCCACTCAATTATAACAAAAACGACTCAACTAATTCAGATCAATTGGTGCCCCGGTATAGAATCGGTCAATTTAAACCTATGACACCACAATGGAAAAATCACRAATCTCCAAAAAAAAAAGAAGCGAAAAACGAAAAACGATGGATGACTCATCGGCGAAAGTTACACAACATAAATGCATCGAAATAGAGTACTTGCTTGAAGTATGCATGCCGTGTCCCTTTAAATTTCCTATACTGTAGTATGGGACATTATTAAAGGGACATGACATTCTCCATTATCACTACATACACTACAATGATAATCTAGAAAAAGGGGGAAAAAGAGAAATTGGATTTTTCTATATTTACGGGAGGAATGAAGAATAGAGAAAGAGAAGAGAAAGTTCACATATATCAATGGATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGCAGAGAAAGAGAGACTTGACCACCAGATTGATTCGTGAGAGATGGAGTGGTGCGGTTTGTATACAAGTCACTTTTACGCTGGTTCTAATAGAAGGGCACCCTATAAATCTTCATTTTATGATTTTCAGCGCTTTTTTTTGTTTTTTTCGACCGCGGTCGACGGCCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>319 189 173 137 57 44 44 37</canonical_bands>
                <polymorphic_bands>319 189 173 137 88 57 37</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>370 206 164 133 127</canonical_bands>
                <polymorphic_bands>576 164 133 127</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>456 363 137 44</canonical_bands>
                <polymorphic_bands>456 407 137</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCTTTCCAAACCTATTAGTATC</pcr_primer_p1>
		<pcr_primer_p2>TGCATTTATGTTGTGTAACTTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCCTTTCCAAACCTATTAGTATCAAAAAAAAAAGTGACTCAAAATTTCGAACGACTTTAAAGGGACACCGCCCACTCAATTATAACAAAAACGACTCAACTAATTCAGATCAATTGGTGCCCCGGTATAGAATCGGTCAATTTAAACCTATGACACCACAATGGAAAAATCACGAATCTCCAAAAAAAAAAGAAGCGAAAAACGAAAAACGATGGATGACTCATCGGCGAAAGTTACACAACATAAATGCA</canonical_amplicon>
		<polymorphic_amplicon>CCCTTTCCAAACCTATTAGTATCAAAAAAAAAAGTGACTCAAAATTTCGAACGACTTTAAAGGGACACCGCCCACTCAATTATAACAAAAACGACTCAACTAATTCAGATCAATTGGTGCCCCGGTATAGAATCGGTCAATTTAAACCTATGACACCACAATGGAAAAATCACRAATCTCCAAAAAAAAAAGAAGCGAAAAACGAAAAACGATGGATGACTCATCGGCGAAAGTTACACAACATAAATGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34726</snp_id>
        <super_contig>c009300673.Contig1</super_contig>
        <contig_pos>18189</contig_pos>
        <strand>+</strand>
        <context>ATGGGACATT[A/T]TTAAAGGGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTATGCATGCCGTGTCCCTTTAAATTTCCTATACTGTAGTATGGGACATT</left_flank>
        <right_flank>TTAAAGGGACATGACATTCTCCATTATCACTACATACACTACAATGATAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTGGGATTTCAAGGAAATTCGAGGTATTTTCAGAAGAGTCAAGCAACTTCAGAATTTTCAACGATTTTTGTTTTTGAATTTTTTTTTCCGAAGAATTTTCAAAACTCCATAAAATCGAAAATTGCCTTTTTTCTTTCCAAAATTCAATGTTTTTTTAAAAAAACGCTTTCAAACCCTTTCCAAACCTATTAGTATCAAAAAAAAAAGTGACTCAAAATTTCGAACGACTTTAAAGGGACACCGCCCACTCAATTATAACAAAAACGACTCAACTAATTCAGATCAATTGGTGCCCCGGTATAGAATCGGTCAATTTAAACCTATGACACCACAATGGAAAAATCACGAATCTCCAAAAAAAAAAGAAGCGAAAAACGAAAAACGATGGATGACTCATCGGCGAAAGTTACACAACATAAATGCATCGAAATAGAGTACTTGCTTGAAGTATGCATGCCGTGTCCCTTTAAATTTCCTATACTGTAGTATGGGACATTATTAAAGGGACATGACATTCTCCATTATCACTACATACACTACAATGATAATCTAGAAAAAGGGGGAAAAAGAGAAATTGGATTTTTCTATATTTACGGGAGGAATGAAGAATAGAGAAAGAGAAGAGAAAGTTCACATATATCAATGGATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGCAGAGAAAGAGAGACTTGACCACCAGATTGATTCGTGAGAGATGGAGTGGTGCGGTTTGTATACAAGTCACTTTTACGCTGGTTCTAATAGAAGGGCACCCTATAAATCTTCATTTTATGATTTTCAGCGCTTTTTTTTGTTTTTTTCGACCGCGGTCGACGGCCCCGGCGGGCGGCTGGCTTATAGGATTCCATTCTATTGAAAATTAGAAATATAACTGACTCTGACTTGCATACAAACCACNNNNNNNNNNTCAACTGATAAAATGTTCATCATAATATCACCAACATTTTATCAGTTGATTAATTTTTCATATC</canonical>
            <polymorphic>TGGTGGGATTTCAAGGAAATTCGAGGTATTTTCAGAAGAGTCAAGCAACTTCAGAATTTTCAACGATTTTTGTTTTTGAATTTTTTTTTCCGAAGAATTTTCAAAACTCCATAAAATCGAAAATTGCCTTTTTTCTTTCCAAAATTCAATGTTTTTTTAAAAAAACGCTTTCAAACCCTTTCCAAACCTATTAGTATCAAAAAAAAAAGTGACTCAAAATTTCGAACGACTTTAAAGGGACACCGCCCACTCAATTATAACAAAAACGACTCAACTAATTCAGATCAATTGGTGCCCCGGTATAGAATCGGTCAATTTAAACCTATGACACCACAATGGAAAAATCACGAATCTCCAAAAAAAAAAGAAGCGAAAAACGAAAAACGATGGATGACTCATCGGCGAAAGTTACACAACATAAATGCATCGAAATAGAGTACTTGCTTGAAGTATGCATGCCGTGTCCCTTTAAATTTCCTATACTGTAGTATGGGACATTWTTAAAGGGACATGACATTCTCCATTATCACTACATACACTACAATGATAATCTAGAAAAAGGGGGAAAAAGAGAAATTGGATTTTTCTATATTTACGGGAGGAATGAAGAATAGAGAAAGAGAAGAGAAAGTTCACATATATCAATGGATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGCAGAGAAAGAGAGACTTGACCACCAGATTGATTCGTGAGAGATGGAGTGGTGCGGTTTGTATACAAGTCACTTTTACGCTGGTTCTAATAGAAGGGCACCCTATAAATCTTCATTTTATGATTTTCAGCGCTTTTTTTTGTTTTTTTCGACCGCGGTCGACGGCCCCGGCGGGCGGCTGGCTTATAGGATTCCATTCTATTGAAAATTAGAAATATAACTGACTCTGACTTGCATACAAACCACNNNNNNNNNNTCAACTGATAAAATGTTCATCATAATATCACCAACATTTTATCAGTTGATTAATTTTTCATATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTAAACCTATGACACCACAA</pcr_primer_p1>
		<pcr_primer_p2>CCCCTTTTTCTAGATTATCATTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATTTAAACCTATGACACCACAATGGAAAAATCACGAATCTCCAAAAAAAAAAGAAGCGAAAAACGAAAAACGATGGATGACTCATCGGCGAAAGTTACACAACATAAATGCATCGAAATAGAGTACTTGCTTGAAGTATGCATGCCGTGTCCCTTTAAATTTCCTATACTGTAGTATGGGACATTATTAAAGGGACATGACATTCTCCATTATCACTACATACACTACAATGATAATCTAGAAAAAGGGG</canonical_amplicon>
		<polymorphic_amplicon>AATTTAAACCTATGACACCACAATGGAAAAATCACGAATCTCCAAAAAAAAAAGAAGCGAAAAACGAAAAACGATGGATGACTCATCGGCGAAAGTTACACAACATAAATGCATCGAAATAGAGTACTTGCTTGAAGTATGCATGCCGTGTCCCTTTAAATTTCCTATACTGTAGTATGGGACATTWTTAAAGGGACATGACATTCTCCATTATCACTACATACACTACAATGATAATCTAGAAAAAGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34727</snp_id>
        <super_contig>c009300673.Contig1</super_contig>
        <contig_pos>18223</contig_pos>
        <strand>+</strand>
        <context>TTATCACTAC[A/T]TACACTACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTAGTATGGGACATTATTAAAGGGACATGACATTCTCCATTATCACTAC</left_flank>
        <right_flank>TACACTACAATGATAATCTAGAAAAAGGGGGAAAAAGAGAAATTGGATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGAGTCAAGCAACTTCAGAATTTTCAACGATTTTTGTTTTTGAATTTTTTTTTCCGAAGAATTTTCAAAACTCCATAAAATCGAAAATTGCCTTTTTTCTTTCCAAAATTCAATGTTTTTTTAAAAAAACGCTTTCAAACCCTTTCCAAACCTATTAGTATCAAAAAAAAAAGTGACTCAAAATTTCGAACGACTTTAAAGGGACACCGCCCACTCAATTATAACAAAAACGACTCAACTAATTCAGATCAATTGGTGCCCCGGTATAGAATCGGTCAATTTAAACCTATGACACCACAATGGAAAAATCACGAATCTCCAAAAAAAAAAGAAGCGAAAAACGAAAAACGATGGATGACTCATCGGCGAAAGTTACACAACATAAATGCATCGAAATAGAGTACTTGCTTGAAGTATGCATGCCGTGTCCCTTTAAATTTCCTATACTGTAGTATGGGACATTATTAAAGGGACATGACATTCTCCATTATCACTACATACACTACAATGATAATCTAGAAAAAGGGGGAAAAAGAGAAATTGGATTTTTCTATATTTACGGGAGGAATGAAGAATAGAGAAAGAGAAGAGAAAGTTCACATATATCAATGGATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGCAGAGAAAGAGAGACTTGACCACCAGATTGATTCGTGAGAGATGGAGTGGTGCGGTTTGTATACAAGTCACTTTTACGCTGGTTCTAATAGAAGGGCACCCTATAAATCTTCATTTTATGATTTTCAGCGCTTTTTTTTGTTTTTTTCGACCGCGGTCGACGGCCCCGGCGGGCGGCTGGCTTATAGGATTCCATTCTATTGAAAATTAGAAATATAACTGACTCTGACTTGCATACAAACCACNNNNNNNNNNTCAACTGATAAAATGTTCATCATAATATCACCAACATTTTATCAGTTGATTAATTTTTCATATCATTTATAGGGCTGCCCTTCTATTAGAGTGTGTTT</canonical>
            <polymorphic>GAAGAGTCAAGCAACTTCAGAATTTTCAACGATTTTTGTTTTTGAATTTTTTTTTCCGAAGAATTTTCAAAACTCCATAAAATCGAAAATTGCCTTTTTTCTTTCCAAAATTCAATGTTTTTTTAAAAAAACGCTTTCAAACCCTTTCCAAACCTATTAGTATCAAAAAAAAAAGTGACTCAAAATTTCGAACGACTTTAAAGGGACACCGCCCACTCAATTATAACAAAAACGACTCAACTAATTCAGATCAATTGGTGCCCCGGTATAGAATCGGTCAATTTAAACCTATGACACCACAATGGAAAAATCACGAATCTCCAAAAAAAAAAGAAGCGAAAAACGAAAAACGATGGATGACTCATCGGCGAAAGTTACACAACATAAATGCATCGAAATAGAGTACTTGCTTGAAGTATGCATGCCGTGTCCCTTTAAATTTCCTATACTGTAGTATGGGACATTATTAAAGGGACATGACATTCTCCATTATCACTACWTACACTACAATGATAATCTAGAAAAAGGGGGAAAAAGAGAAATTGGATTTTTCTATATTTACGGGAGGAATGAAGAATAGAGAAAGAGAAGAGAAAGTTCACATATATCAATGGATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGCAGAGAAAGAGAGACTTGACCACCAGATTGATTCGTGAGAGATGGAGTGGTGCGGTTTGTATACAAGTCACTTTTACGCTGGTTCTAATAGAAGGGCACCCTATAAATCTTCATTTTATGATTTTCAGCGCTTTTTTTTGTTTTTTTCGACCGCGGTCGACGGCCCCGGCGGGCGGCTGGCTTATAGGATTCCATTCTATTGAAAATTAGAAATATAACTGACTCTGACTTGCATACAAACCACNNNNNNNNNNTCAACTGATAAAATGTTCATCATAATATCACCAACATTTTATCAGTTGATTAATTTTTCATATCATTTATAGGGCTGCCCTTCTATTAGAGTGTGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACATAAATGCATCGAAATAGAG</pcr_primer_p1>
		<pcr_primer_p2>TCCATTGATATATGTGAACTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>AACATAAATGCATCGAAATAGAGTACTTGCTTGAAGTATGCATGCCGTGTCCCTTTAAATTTCCTATACTGTAGTATGGGACATTATTAAAGGGACATGACATTCTCCATTATCACTACATACACTACAATGATAATCTAGAAAAAGGGGGAAAAAGAGAAATTGGATTTTTCTATATTTACGGGAGGAATGAAGAATAGAGAAAGAGAAGAGAAAGTTCACATATATCAATGGA</canonical_amplicon>
		<polymorphic_amplicon>AACATAAATGCATCGAAATAGAGTACTTGCTTGAAGTATGCATGCCGTGTCCCTTTAAATTTCCTATACTGTAGTATGGGACATTATTAAAGGGACATGACATTCTCCATTATCACTACWTACACTACAATGATAATCTAGAAAAAGGGGGAAAAAGAGAAATTGGATTTTTCTATATTTACGGGAGGAATGAAGAATAGAGAAAGAGAAGAGAAAGTTCACATATATCAATGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34728</snp_id>
        <super_contig>c009300673.Contig1</super_contig>
        <contig_pos>18270</contig_pos>
        <strand>+</strand>
        <context>GAGAAATTGG[A/G]TTTTTCTATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACATACACTACAATGATAATCTAGAAAAAGGGGGAAAAAGAGAAATTGG</left_flank>
        <right_flank>TTTTTCTATATTTACGGGAGGAATGAAGAATAGAGAAAGAGAAGAGAAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTTCCGAAGAATTTTCAAAACTCCATAAAATCGAAAATTGCCTTTTTTCTTTCCAAAATTCAATGTTTTTTTAAAAAAACGCTTTCAAACCCTTTCCAAACCTATTAGTATCAAAAAAAAAAGTGACTCAAAATTTCGAACGACTTTAAAGGGACACCGCCCACTCAATTATAACAAAAACGACTCAACTAATTCAGATCAATTGGTGCCCCGGTATAGAATCGGTCAATTTAAACCTATGACACCACAATGGAAAAATCACGAATCTCCAAAAAAAAAAGAAGCGAAAAACGAAAAACGATGGATGACTCATCGGCGAAAGTTACACAACATAAATGCATCGAAATAGAGTACTTGCTTGAAGTATGCATGCCGTGTCCCTTTAAATTTCCTATACTGTAGTATGGGACATTATTAAAGGGACATGACATTCTCCATTATCACTACATACACTACAATGATAATCTAGAAAAAGGGGGAAAAAGAGAAATTGGATTTTTCTATATTTACGGGAGGAATGAAGAATAGAGAAAGAGAAGAGAAAGTTCACATATATCAATGGATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGCAGAGAAAGAGAGACTTGACCACCAGATTGATTCGTGAGAGATGGAGTGGTGCGGTTTGTATACAAGTCACTTTTACGCTGGTTCTAATAGAAGGGCACCCTATAAATCTTCATTTTATGATTTTCAGCGCTTTTTTTTGTTTTTTTCGACCGCGGTCGACGGCCCCGGCGGGCGGCTGGCTTATAGGATTCCATTCTATTGAAAATTAGAAATATAACTGACTCTGACTTGCATACAAACCACNNNNNNNNNNTCAACTGATAAAATGTTCATCATAATATCACCAACATTTTATCAGTTGATTAATTTTTCATATCATTTATAGGGCTGCCCTTCTATTAGAGTGTGTTTACTACCAGATTGATTCGTGAGAAAACTAGTGGTGGAGTGGTGCGGTT</canonical>
            <polymorphic>TTTTTTTTCCGAAGAATTTTCAAAACTCCATAAAATCGAAAATTGCCTTTTTTCTTTCCAAAATTCAATGTTTTTTTAAAAAAACGCTTTCAAACCCTTTCCAAACCTATTAGTATCAAAAAAAAAAGTGACTCAAAATTTCGAACGACTTTAAAGGGACACCGCCCACTCAATTATAACAAAAACGACTCAACTAATTCAGATCAATTGGTGCCCCGGTATAGAATCGGTCAATTTAAACCTATGACACCACAATGGAAAAATCACGAATCTCCAAAAAAAAAAGAAGCGAAAAACGAAAAACGATGGATGACTCATCGGCGAAAGTTACACAACATAAATGCATCGAAATAGAGTACTTGCTTGAAGTATGCATGCCGTGTCCCTTTAAATTTCCTATACTGTAGTATGGGACATTATTAAAGGGACATGACATTCTCCATTATCACTACATACACTACAATGATAATCTAGAAAAAGGGGGAAAAAGAGAAATTGGRTTTTTCTATATTTACGGGAGGAATGAAGAATAGAGAAAGAGAAGAGAAAGTTCACATATATCAATGGATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGCAGAGAAAGAGAGACTTGACCACCAGATTGATTCGTGAGAGATGGAGTGGTGCGGTTTGTATACAAGTCACTTTTACGCTGGTTCTAATAGAAGGGCACCCTATAAATCTTCATTTTATGATTTTCAGCGCTTTTTTTTGTTTTTTTCGACCGCGGTCGACGGCCCCGGCGGGCGGCTGGCTTATAGGATTCCATTCTATTGAAAATTAGAAATATAACTGACTCTGACTTGCATACAAACCACNNNNNNNNNNTCAACTGATAAAATGTTCATCATAATATCACCAACATTTTATCAGTTGATTAATTTTTCATATCATTTATAGGGCTGCCCTTCTATTAGAGTGTGTTTACTACCAGATTGATTCGTGAGAAAACTAGTGGTGGAGTGGTGCGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACATAAATGCATCGAAATAGAG</pcr_primer_p1>
		<pcr_primer_p2>TCCATTGATATATGTGAACTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>AACATAAATGCATCGAAATAGAGTACTTGCTTGAAGTATGCATGCCGTGTCCCTTTAAATTTCCTATACTGTAGTATGGGACATTATTAAAGGGACATGACATTCTCCATTATCACTACATACACTACAATGATAATCTAGAAAAAGGGGGAAAAAGAGAAATTGGATTTTTCTATATTTACGGGAGGAATGAAGAATAGAGAAAGAGAAGAGAAAGTTCACATATATCAATGGA</canonical_amplicon>
		<polymorphic_amplicon>AACATAAATGCATCGAAATAGAGTACTTGCTTGAAGTATGCATGCCGTGTCCCTTTAAATTTCCTATACTGTAGTATGGGACATTATTAAAGGGACATGACATTCTCCATTATCACTACATACACTACAATGATAATCTAGAAAAAGGGGGAAAAAGAGAAATTGGRTTTTTCTATATTTACGGGAGGAATGAAGAATAGAGAAAGAGAAGAGAAAGTTCACATATATCAATGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34729</snp_id>
        <super_contig>c009300673.Contig1</super_contig>
        <contig_pos>18454</contig_pos>
        <strand>+</strand>
        <context>TTTACGCTGG[A/T]TCTAATAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGTGAGAGATGGAGTGGTGCGGTTTGTATACAAGTCACTTTTACGCTGG</left_flank>
        <right_flank>TCTAATAGAAGGGCACCCTATAAATCTTCATTTTATGATTTTCAGCGCTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGACTCAACTAATTCAGATCAATTGGTGCCCCGGTATAGAATCGGTCAATTTAAACCTATGACACCACAATGGAAAAATCACGAATCTCCAAAAAAAAAAGAAGCGAAAAACGAAAAACGATGGATGACTCATCGGCGAAAGTTACACAACATAAATGCATCGAAATAGAGTACTTGCTTGAAGTATGCATGCCGTGTCCCTTTAAATTTCCTATACTGTAGTATGGGACATTATTAAAGGGACATGACATTCTCCATTATCACTACATACACTACAATGATAATCTAGAAAAAGGGGGAAAAAGAGAAATTGGATTTTTCTATATTTACGGGAGGAATGAAGAATAGAGAAAGAGAAGAGAAAGTTCACATATATCAATGGATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGCAGAGAAAGAGAGACTTGACCACCAGATTGATTCGTGAGAGATGGAGTGGTGCGGTTTGTATACAAGTCACTTTTACGCTGGTTCTAATAGAAGGGCACCCTATAAATCTTCATTTTATGATTTTCAGCGCTTTTTTTTGTTTTTTTCGACCGCGGTCGACGGCCCCGGCGGGCGGCTGGCTTATAGGATTCCATTCTATTGAAAATTAGAAATATAACTGACTCTGACTTGCATACAAACCACNNNNNNNNNNTCAACTGATAAAATGTTCATCATAATATCACCAACATTTTATCAGTTGATTAATTTTTCATATCATTTATAGGGCTGCCCTTCTATTAGAGTGTGTTTACTACCAGATTGATTCGTGAGAAAACTAGTGGTGGAGTGGTGCGGTTTGTATACAAGTCAGAGTCAGTTATACTTCTAATTTTCAATAGAATCGAATCCTATAAGCCAGCCGCCCGCCGGGGCCGTCGACCGCGGTCGAAAAAACAAAAAAAAGCGCTGAAAATCATAAAATGGTGATTTTTTTTATGTTCACTATTCGACACAAAAACAAAGCGAAAAAATCGAATTTTT</canonical>
            <polymorphic>ACGACTCAACTAATTCAGATCAATTGGTGCCCCGGTATAGAATCGGTCAATTTAAACCTATGACACCACAATGGAAAAATCACGAATCTCCAAAAAAAAAAGAAGCGAAAAACGAAAAACGATGGATGACTCATCGGCGAAAGTTACACAACATAAATGCATCGAAATAGAGTACTTGCTTGAAGTATGCATGCCGTGTCCCTTTAAATTTCCTATACTGTAGTATGGGACATTATTAAAGGGACATGACATTCTCCATTATCACTACATACACTACAATGATAATCTAGAAAAAGGGGGAAAAAGAGAAATTGGATTTTTCTATATTTACGGGAGGAATGAAGAATAGAGAAAGAGAAGAGAAAGTTCACATATATCAATGGATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGCAGAGAAAGAGAGACTTGACCACCAGATTGATTCGTGAGAGATGGAGTGGTGCGGTTTGTATACAAGTCACTTTTACGCTGGWTCTAATAGAAGGGCACCCTATAAATCTTCATTTTATGATTTTCAGCGCTTTTTTTTGTTTTTTTCGACCGCGGTCGACGGCCCCGGCGGGCGGCTGGCTTATAGGATTCCATTCTATTGAAAATTAGAAATATAACTGACTCTGACTTGCATACAAACCACNNNNNNNNNNTCAACTGATAAAATGTTCATCATAATATCACCAACATTTTATCAGTTGATTAATTTTTCATATCATTTATAGGGCTGCCCTTCTATTAGAGTGTGTTTACTACCAGATTGATTCGTGAGAAAACTAGTGGTGGAGTGGTGCGGTTTGTATACAAGTCAGAGTCAGTTATACTTCTAATTTTCAATAGAATCGAATCCTATAAGCCAGCCGCCCGCCGGGGCCGTCGACCGCGGTCGAAAAAACAAAAAAAAGCGCTGAAAATCATAAAATGGTGATTTTTTTTATGTTCACTATTCGACACAAAAACAAAGCGAAAAAATCGAATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTATATTTACGGGAGGA</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGCGCTGAAAATCATA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTATATTTACGGGAGGAATGAAGAATAGAGAAAGAGAAGAGAAAGTTCACATATATCAATGGATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGCAGAGAAAGAGAGACTTGACCACCAGATTGATTCGTGAGAGATGGAGTGGTGCGGTTTGTATACAAGTCACTTTTACGCTGGTTCTAATAGAAGGGCACCCTATAAATCTTCATTTTATGATTTTCAGCGCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTATATTTACGGGAGGAATGAAGAATAGAGAAAGAGAAGAGAAAGTTCACATATATCAATGGATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGCAGAGAAAGAGAGACTTGACCACCAGATTGATTCGTGAGAGATGGAGTGGTGCGGTTTGTATACAAGTCACTTTTACGCTGGWTCTAATAGAAGGGCACCCTATAAATCTTCATTTTATGATTTTCAGCGCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34730</snp_id>
        <super_contig>c009300673.Contig1</super_contig>
        <contig_pos>18564</contig_pos>
        <strand>+</strand>
        <context>TATAGGATTC[C/G]ATTCTATTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTTCGACCGCGGTCGACGGCCCCGGCGGGCGGCTGGCTTATAGGATTC</left_flank>
        <right_flank>ATTCTATTGAAAATTAGAAATATAACTGACTCTGACTTGCATACAAACCA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGAAAAACGATGGATGACTCATCGGCGAAAGTTACACAACATAAATGCATCGAAATAGAGTACTTGCTTGAAGTATGCATGCCGTGTCCCTTTAAATTTCCTATACTGTAGTATGGGACATTATTAAAGGGACATGACATTCTCCATTATCACTACATACACTACAATGATAATCTAGAAAAAGGGGGAAAAAGAGAAATTGGATTTTTCTATATTTACGGGAGGAATGAAGAATAGAGAAAGAGAAGAGAAAGTTCACATATATCAATGGATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGCAGAGAAAGAGAGACTTGACCACCAGATTGATTCGTGAGAGATGGAGTGGTGCGGTTTGTATACAAGTCACTTTTACGCTGGTTCTAATAGAAGGGCACCCTATAAATCTTCATTTTATGATTTTCAGCGCTTTTTTTTGTTTTTTTCGACCGCGGTCGACGGCCCCGGCGGGCGGCTGGCTTATAGGATTCCATTCTATTGAAAATTAGAAATATAACTGACTCTGACTTGCATACAAACCACNNNNNNNNNNTCAACTGATAAAATGTTCATCATAATATCACCAACATTTTATCAGTTGATTAATTTTTCATATCATTTATAGGGCTGCCCTTCTATTAGAGTGTGTTTACTACCAGATTGATTCGTGAGAAAACTAGTGGTGGAGTGGTGCGGTTTGTATACAAGTCAGAGTCAGTTATACTTCTAATTTTCAATAGAATCGAATCCTATAAGCCAGCCGCCCGCCGGGGCCGTCGACCGCGGTCGAAAAAACAAAAAAAAGCGCTGAAAATCATAAAATGGTGATTTTTTTTATGTTCACTATTCGACACAAAAACAAAGCGAAAAAATCGAATTTTTCGCCATTTTAAGATTGTCCAAAATATCGATTTTTTAGGCTTAAAATGTCCCCCAAAAATTCTAATTTCTTTCTTTTTTGTCTGTTGAACTAAATAAAACGAAAATTGGCC</canonical>
            <polymorphic>AACGAAAAACGATGGATGACTCATCGGCGAAAGTTACACAACATAAATGCATCGAAATAGAGTACTTGCTTGAAGTATGCATGCCGTGTCCCTTTAAATTTCCTATACTGTAGTATGGGACATTATTAAAGGGACATGACATTCTCCATTATCACTACATACACTACAATGATAATCTAGAAAAAGGGGGAAAAAGAGAAATTGGATTTTTCTATATTTACGGGAGGAATGAAGAATAGAGAAAGAGAAGAGAAAGTTCACATATATCAATGGATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGCAGAGAAAGAGAGACTTGACCACCAGATTGATTCGTGAGAGATGGAGTGGTGCGGTTTGTATACAAGTCACTTTTACGCTGGTTCTAATAGAAGGGCACCCTATAAATCTTCATTTTATGATTTTCAGCGCTTTTTTTTGTTTTTTTCGACCGCGGTCGACGGCCCCGGCGGGCGGCTGGCTTATAGGATTCSATTCTATTGAAAATTAGAAATATAACTGACTCTGACTTGCATACAAACCACNNNNNNNNNNTCAACTGATAAAATGTTCATCATAATATCACCAACATTTTATCAGTTGATTAATTTTTCATATCATTTATAGGGCTGCCCTTCTATTAGAGTGTGTTTACTACCAGATTGATTCGTGAGAAAACTAGTGGTGGAGTGGTGCGGTTTGTATACAAGTCAGAGTCAGTTATACTTCTAATTTTCAATAGAATCGAATCCTATAAGCCAGCCGCCCGCCGGGGCCGTCGACCGCGGTCGAAAAAACAAAAAAAAGCGCTGAAAATCATAAAATGGTGATTTTTTTTATGTTCACTATTCGACACAAAAACAAAGCGAAAAAATCGAATTTTTCGCCATTTTAAGATTGTCCAAAATATCGATTTTTTAGGCTTAAAATGTCCCCCAAAAATTCTAATTTCTTTCTTTTTTGTCTGTTGAACTAAATAAAACGAAAATTGGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATGATTTTCAGCGCTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCAATCTGGTAGTAAACACACTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTATGATTTTCAGCGCTTTTTTTTGTTTTTTTCGACCGCGGTCGACGGCCCCGGCGGGCGGCTGGCTTATAGGATTCCATTCTATTGAAAATTAGAAATATAACTGACTCTGACTTGCATACAAACCACNNNNNNNNNNTCAACTGATAAAATGTTCATCATAATATCACCAACATTTTATCAGTTGATTAATTTTTCATATCATTTATAGGGCTGCCCTTCTATTAGAGTGTGTTTACTACCAGATTGA</canonical_amplicon>
		<polymorphic_amplicon>TTATGATTTTCAGCGCTTTTTTTTGTTTTTTTCGACCGCGGTCGACGGCCCCGGCGGGCGGCTGGCTTATAGGATTCSATTCTATTGAAAATTAGAAATATAACTGACTCTGACTTGCATACAAACCACNNNNNNNNNNTCAACTGATAAAATGTTCATCATAATATCACCAACATTTTATCAGTTGATTAATTTTTCATATCATTTATAGGGCTGCCCTTCTATTAGAGTGTGTTTACTACCAGATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34731</snp_id>
        <super_contig>c009300673.Contig1</super_contig>
        <contig_pos>32512</contig_pos>
        <strand>+</strand>
        <context>GGAATTTTAG[A/G]TTTTTTTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAAATAGATATTTTTCATCATTTTAGGGCAAAAAATGCGGAATTTTAG</left_flank>
        <right_flank>TTTTTTTTGACTGAAGAATGGGAATTTTTGAGGATTTTGAGTCAAAAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGAAAAATAGGAATTTTTCGGGATTTTTAGGCCAAAAAAATGGAGAATTTTAGTGTTTTTTGACTGTAAATTTGGGATTTTTCGGCCGAAAAATTTTGAATTTTTATGTTTTTTTGGCTGAAAAATAGATATTTTTCATCATTTTCAGTCAAAAATAGCGAACTTTCATGATTTTTTGACTGAAAATGAGATTTTTAAGGGATTATTAGCGCAGAAAATGATGAATTTTGGGGTTTTTTGTTTTTTTGGGGTTTTTCTGAAAAATAGATATTTTTCATCATTTTAGAGCAAAAAATGCGGAATTTCAGTTTTTTTTGACTGAAAAATGGGATTTTTTGAGGATTTTTAGCGCAGAAAATGATGAATTTTGATGTTTTTCGGCTGAAAAATAGGAATTTTTAAGGGATTTTTAGGACAAAAAATGATGAAATTTGGGGTTTTTTGACTGAAAAATAGATATTTTTCATCATTTTAGGGCAAAAAATGCGGAATTTTAGTTTTTTTTTGACTGAAGAATGGGAATTTTTGAGGATTTTGAGTCAAAAATGAGAATTTTTGATTGAAATTTTGCAACTTTTTTGGGATTTTCGGCCAAAGAATGGTAAATGTTGGGTTTTTTTTCTGAAAAAATACGGTTTTTAAGGGACTTTTAGGGCAGAAAATGATGAATTTTGATATTTTTTGGTTGAAAAATGGGATTTTTTAGGGATTTTTTGGGGCGAAAAATAGTGAACTTCTAAGTTTTTTTGACGAAAAGTGGAAGATAATTTTTGGCCGAGAAACCCAATTTTTGAGTCAAAAATCGCAAATTTTTAATGTTTTTTGGCTGCAAATAGGGAATTTCAGGGAATTTTCAGTCAAAAAATCAGCATTTTTCATGATTTTTGATTCAATTTTCATGGTTTTGACCGAAAAATTTTGGATTTTCTGATTTTCTGTCTGGAAATCAGAGAAAAAATTCGAAAGTTTGAAAATTTAAGTGGATTTTTTTCAATTCC</canonical>
            <polymorphic>ACTGAAAAATAGGAATTTTTCGGGATTTTTAGGCCAAAAAAATGGAGAATTTTAGTGTTTTTTGACTGTAAATTTGGGATTTTTCGGCCGAAAAATTTTGAATTTTTATGTTTTTTTGGCTGAAAAATAGATATTTTTCATCATTTTCAGTCAAAAATAGCGAACTTTCATGATTTTTTGACTGAAAATGAGATTTTTAAGGGATTATTAGCGCAGAAAATGATGAATTTTGGGGTTTTTTGTTTTTTTGGGGTTTTTCTGAAAAATAGATATTTTTCATCATTTTAGAGCAAAAAATGCGGAATTTCAGTTTTTTTTGACTGAAAAATGGGATTTTTTGAGGATTTTTAGCGCAGAAAATGATGAATTTTGATGTTTTTCGGCTGAAAAATAGGAATTTTTAAGGGATTTTTAGGACAAAAAATGATGAAATTTGGGGTTTTTTGACTGAAAAATAGATATTTTTCATCATTTTAGGGCAAAAAATGCGGAATTTTAGRTTTTTTTTGACTGAAGAATGGGAATTTTTGAGGATTTTGAGTCAAAAATGAGAATTTTTGATTGAAATTTTGCAACTTTTTTGGGATTTTCGGCCAAAGAATGGTAAATGTTGGGTTTTTTTTCTGAAAAAATACGGTTTTTAAGGGACTTTTAGGGCAGAAAATGATGAATTTTGATATTTTTTGGTTGAAAAATGGGATTTTTTAGGGATTTTTTGGGGCGAAAAATAGTGAACTTCTAAGTTTTTTTGACGAAAAGTGGAAGATAATTTTTGGCCGAGAAACCCAATTTTTGAGTCAAAAATCGCAAATTTTTAATGTTTTTTGGCTGCAAATAGGGAATTTCAGGGAATTTTCAGTCAAAAAATCAGCATTTTTCATGATTTTTGATTCAATTTTCATGGTTTTGACCGAAAAATTTTGGATTTTCTGATTTTCTGTCTGGAAATCAGAGAAAAAATTCGAAAGTTTGAAAATTTAAGTGGATTTTTTTCAATTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGATGAATTTTGATGTTTTTC</pcr_primer_p1>
		<pcr_primer_p2>ACCCAACATTTACCATTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>AATGATGAATTTTGATGTTTTTCGGCTGAAAAATAGGAATTTTTAAGGGATTTTTAGGACAAAAAATGATGAAATTTGGGGTTTTTTGACTGAAAAATAGATATTTTTCATCATTTTAGGGCAAAAAATGCGGAATTTTAGTTTTTTTTTGACTGAAGAATGGGAATTTTTGAGGATTTTGAGTCAAAAATGAGAATTTTTGATTGAAATTTTGCAACTTTTTTGGGATTTTCGGCCAAAGAATGGTAAATGTTGGGT</canonical_amplicon>
		<polymorphic_amplicon>AATGATGAATTTTGATGTTTTTCGGCTGAAAAATAGGAATTTTTAAGGGATTTTTAGGACAAAAAATGATGAAATTTGGGGTTTTTTGACTGAAAAATAGATATTTTTCATCATTTTAGGGCAAAAAATGCGGAATTTTAGRTTTTTTTTGACTGAAGAATGGGAATTTTTGAGGATTTTGAGTCAAAAATGAGAATTTTTGATTGAAATTTTGCAACTTTTTTGGGATTTTCGGCCAAAGAATGGTAAATGTTGGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34732</snp_id>
        <super_contig>c009300673.Contig1</super_contig>
        <contig_pos>45326</contig_pos>
        <strand></strand>
        <context>ttctgaattt[T/C]tgattttctg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCTGAATTATGGAATTTCTGAATTTCTGAATTATGGAATTTCTGAATTT</left_flank>
        <right_flank>TGATTTTCTGAATTTCTGAATTTCTGATTTTCTGAATTTCTGAATTTCTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTGTCACATTGTGAAGCCCATTAAATTGACCACCATATGTCCCTTTAAAGGAACATAAAGAAACAAAAAAAGTTTTGCCGCTTAAGACAATCCAAGTGACACATATCTATACACATATATGTGTACATCAGCCGGTTCATTTCGCGCAACTGTTTTAAAAAGAGGGAGAAGGATTACTGTAGATTGTGGCCTTGAATGTGTGGGGGGAGAAGAAAAACTAATCATTTGAAAAGGGAATTCAAAGAAATAAGGGGAAGAATAAGATTGATGTAGTTTGAATTTGGAGAGGTAAGTGGGGATTGGATTGGTGTTGATTGGTGTTCAGAATGAAATATGTACTTTTATTTTCTTTTTTTGGTAGATCACTTTTTAGAAAATTCTAAAAACAGTAACTTTTTGAAAAAGGCCAAAAATGACCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTATGGAATTTCTGAATTTCTGAATTATGGAATTTCTGAATTTTTGATTTTCTGAATTTCTGAATTTCTGATTTTCTGAATTTCTGAATTTCTGAATTTCTGGATTTCTAAATTTCTGAATTTCTGAATTTCTGGATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGGATTTCTAAATTTTTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGATTTTCTGAATTTCTGAATTTCTGAATTTCTGGATTTCTAAATTTCTGAATTTCTGAATTTCTGGATTTCTAAATTTCTGAATTTCTGAATTTTCGAATTTTCGAATTTCTGAATTTTTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGATTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTCCTGAAATTTCTGAATTTCTGAATCGAAATTTCAAAAATTTGGAAAAAAAAAAATATAAAAACGAAAAGTCGGAAGCCCTTAATTTTCATGCAAAAATGAAGAAATTTCA</canonical>
            <polymorphic>GCTTGTCACATTGTGAAGCCCATTAAATTGACCACCATATGTCCCTTTAAAGGAACATAAAGAAACAAAAAAAGTTTTGCCGCTTAAGACAATCCAAGTGACACATATCTATACACATATATGTGTACATCAGCCGGTTCATTTCGCGCAACTGTTTTAAAAAGAGGGAGAAGGATTACTGTAGATTGTGGCCTTGAATGTGTGGGGGGAGAAGAAAAACTAATCATTTGAAAAGGGAATTCAAAGAAATAAGGGGAAGAATAAGATTGATGTAGTTTGAATTTGGAGAGGTAAGTGGGGATTGGATTGGTGTTGATTGGTGTTCAGAATGAAATATGTACTTTTATTTTCTTTTTTTGGTAGATCACTTTTTAGAAAATTCTAAAAACAGTAACTTTTTGAAAAAGGCCAAAAATGACCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTATGGAATTTCTGAATTTCTGAATTATGGAATTTCTGAATTTYTGATTTTCTGAATTTCTGAATTTCTGATTTTCTGAATTTCTGAATTTCTGAATTTCTGGATTTCTAAATTTCTGAATTTCTGAATTTCTGGATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGGATTTCTAAATTTTTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGATTTTCTGAATTTCTGAATTTCTGAATTTCTGGATTTCTAAATTTCTGAATTTCTGAATTTCTGGATTTCTAAATTTCTGAATTTCTGAATTTTCGAATTTTCGAATTTCTGAATTTTTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGATTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTCCTGAAATTTCTGAATTTCTGAATCGAAATTTCAAAAATTTGGAAAAAAAAAAATATAAAAACGAAAAGTCGGAAGCCCTTAATTTTCATGCAAAAATGAAGAAATTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGATTGGTGTTCAGAATGA</pcr_primer_p1>
		<pcr_primer_p2>AATTTCTTCATTTTTGCATGA</pcr_primer_p2>
		<pcr_amplicon_size>686</pcr_amplicon_size>
		<canonical_amplicon>GTTGATTGGTGTTCAGAATGAAATATGTACTTTTATTTTCTTTTTTTGGTAGATCACTTTTTAGAAAATTCTAAAAACAGTAACTTTTTGAAAAAGGCCAAAAATGACCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTATGGAATTTCTGAATTTCTGAATTATGGAATTTCTGAATTTTTGATTTTCTGAATTTCTGAATTTCTGATTTTCTGAATTTCTGAATTTCTGAATTTCTGGATTTCTAAATTTCTGAATTTCTGAATTTCTGGATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGGATTTCTAAATTTTTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGATTTTCTGAATTTCTGAATTTCTGAATTTCTGGATTTCTAAATTTCTGAATTTCTGAATTTCTGGATTTCTAAATTTCTGAATTTCTGAATTTTCGAATTTTCGAATTTCTGAATTTTTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGATTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTCCTGAAATTTCTGAATTTCTGAATCGAAATTTCAAAAATTTGGAAAAAAAAAAATATAAAAACGAAAAGTCGGAAGCCCTTAATTTTCATGCAAAAATGAAGAAATT</canonical_amplicon>
		<polymorphic_amplicon>GTTGATTGGTGTTCAGAATGAAATATGTACTTTTATTTTCTTTTTTTGGTAGATCACTTTTTAGAAAATTCTAAAAACAGTAACTTTTTGAAAAAGGCCAAAAATGACCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTATGGAATTTCTGAATTTCTGAATTATGGAATTTCTGAATTTYTGATTTTCTGAATTTCTGAATTTCTGATTTTCTGAATTTCTGAATTTCTGAATTTCTGGATTTCTAAATTTCTGAATTTCTGAATTTCTGGATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGGATTTCTAAATTTTTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGATTTTCTGAATTTCTGAATTTCTGAATTTCTGGATTTCTAAATTTCTGAATTTCTGAATTTCTGGATTTCTAAATTTCTGAATTTCTGAATTTTCGAATTTTCGAATTTCTGAATTTTTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGATTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTCCTGAAATTTCTGAATTTCTGAATCGAAATTTCAAAAATTTGGAAAAAAAAAAATATAAAAACGAAAAGTCGGAAGCCCTTAATTTTCATGCAAAAATGAAGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34733</snp_id>
        <super_contig>c009300673.Contig1</super_contig>
        <contig_pos>46925</contig_pos>
        <strand></strand>
        <context>ctttttgata[C/T]ctttcaaaak</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATATTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATA</left_flank>
        <right_flank>CTTTCAAAAGGAGTGAGATATATAGGCTCAAAGTGGACGGACAGGGTGGC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATCCGATTTTTTGAAATTTCTCGAATTTCGGAAATTTTGAATTTTTTCAAAAAAAAAGGTATTTTTTCAAAATCTCAATTTTTCCGTTTTTTTTTGTAAATTTTCATTTCCTGTGCCAAGAATTTTTTTCTGTCATCTTGTCTTTCTTCATTTCTTTTTGAGATTCGATTTATATATTTTTTTTCCTGTCAAATGCGCTCTAATGCACTTTTTTTAAAATTTATCATCCTTAAATATCTAAACCCTGGGAATTTACACCGTTGATTTTTTTTTGAAATTCGAATTTAATATTTTTCTGAAACATTCCACCAATTCTTTGTTGCATTCCGACAATTTTTCTTGTTCTTTGTAACAAATTCGCTCTATTGATAATCGCCTCATCGTCAAATTTGAGCCCATATATCTCATTTTCCGTGAGAGATATCAAAAAGTGGTCAACTGATAAAATATTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATACCTTTCAAAAGGAGTGAGATATATAGGCTCAAAGTGGACGGACAGGGTGGCGTTCTATTAGAGTGTTTACGGTGATTGAAATTGATTATCGATAGAGCGAATTTGCGCTGAAACTCATATTTCTTATTTTGTGATTTTCTATTCTATTCCTTTTCTGAAAATCTAATCTTTGTAAAAAAAAGTTCTGAAAATAAAAATTTTATTTAATTAGTTTTTAGGAAATTCAGGAAATTCAGTAAAATCAGGAACTCAGAAAATCAGAAATTCGAAAAATCAAAAATTCAGAAATTCAGAAATCCAGGAATTCAGAAATTCAGAAATTCAGAAATTCATTAATTCAGAAATTCAGAAATTCAGAATTTCAGAATTTCAGAAATTCAGAAATCCAGGAATTCAGAAATTCAGAAATTCAGAAATTCATTAATTCAGAAATTCAGAAATTCAGAATTTCAGAATTTCAGAAATTCAGAAATCCAGGAATTCAGAAATTCAGAAATTCAG</canonical>
            <polymorphic>AAAATCCGATTTTTTGAAATTTCTCGAATTTCGGAAATTTTGAATTTTTTCAAAAAAAAAGGTATTTTTTCAAAATCTCAATTTTTCCGTTTTTTTTTGTAAATTTTCATTTCCTGTGCCAAGAATTTTTTTCTGTCATCTTGTCTTTCTTCATTTCTTTTTGAGATTCGATTTATATATTTTTTTTCCTGTCAAATGCGCTCTAATGCACTTTTTTTAAAATTTATCATCCTTAAATATCTAAACCCTGGGAATTTACACCGTTGATTTTTTTTTGAAATTCGAATTTAATATTTTTCTGAAACATTCCACCAATTCTTTGTTGCATTCCGACAATTTTTCTTGTTCTTTGTAACAAATTCGCTCTATTGATAATCGCCTCATCGTCAAATTTGAGCCCATATATCTCATTTTCCGTGAGAGATATCAAAAAGTGGTCAACTGATAAAATATTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATAYCTTTCAAAAGGAGTGAGATATATAGGCTCAAAGTGGACGGACAGGGTGGCGTTCTATTAGAGTGTTTACGGTGATTGAAATTGATTATCGATAGAGCGAATTTGCGCTGAAACTCATATTTCTTATTTTGTGATTTTCTATTCTATTCCTTTTCTGAAAATCTAATCTTTGTAAAAAAAAGTTCTGAAAATAAAAATTTTATTTAATTAGTTTTTAGGAAATTCAGGAAATTCAGTAAAATCAGGAACTCAGAAAATCAGAAATTCGAAAAATCAAAAATTCAGAAATTCAGAAATCCAGGAATTCAGAAATTCAGAAATTCAGAAATTCATTAATTCAGAAATTCAGAAATTCAGAATTTCAGAATTTCAGAAATTCAGAAATCCAGGAATTCAGAAATTCAGAAATTCAGAAATTCATTAATTCAGAAATTCAGAAATTCAGAATTTCAGAATTTCAGAAATTCAGAAATCCAGGAATTCAGAAATTCAGAAATTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAATTTTTCTTGTTCTTTGTAA</pcr_primer_p1>
		<pcr_primer_p2>TCGCTCTATCGATAATCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>GACAATTTTTCTTGTTCTTTGTAACAAATTCGCTCTATTGATAATCGCCTCATCGTCAAATTTGAGCCCATATATCTCATTTTCCGTGAGAGATATCAAAAAGTGGTCAACTGATAAAATATTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATACCTTTCAAAAGGAGTGAGATATATAGGCTCAAAGTGGACGGACAGGGTGGCGTTCTATTAGAGTGTTTACGGTGATTGAAATTGATTATCGATAGAGCGA</canonical_amplicon>
		<polymorphic_amplicon>GACAATTTTTCTTGTTCTTTGTAACAAATTCGCTCTATTGATAATCGCCTCATCGTCAAATTTGAGCCCATATATCTCATTTTCCGTGAGAGATATCAAAAAGTGGTCAACTGATAAAATATTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATAYCTTTCAAAAGGAGTGAGATATATAGGCTCAAAGTGGACGGACAGGGTGGCGTTCTATTAGAGTGTTTACGGTGATTGAAATTGATTATCGATAGAGCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34734</snp_id>
        <super_contig>c009300673.Contig1</super_contig>
        <contig_pos>46935</contig_pos>
        <strand></strand>
        <context>yctttcaaaa[G/T]ragtgagata</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATCATGATAAACATTTTATCAGTTGACAACTTTTTGATACCTTTCAAAA</left_flank>
        <right_flank>GAGTGAGATATATAGGCTCAAAGTGGACGGACAGGGTGGCGTTCTATTAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGAAATTTCTCGAATTTCGGAAATTTTGAATTTTTTCAAAAAAAAAGGTATTTTTTCAAAATCTCAATTTTTCCGTTTTTTTTTGTAAATTTTCATTTCCTGTGCCAAGAATTTTTTTCTGTCATCTTGTCTTTCTTCATTTCTTTTTGAGATTCGATTTATATATTTTTTTTCCTGTCAAATGCGCTCTAATGCACTTTTTTTAAAATTTATCATCCTTAAATATCTAAACCCTGGGAATTTACACCGTTGATTTTTTTTTGAAATTCGAATTTAATATTTTTCTGAAACATTCCACCAATTCTTTGTTGCATTCCGACAATTTTTCTTGTTCTTTGTAACAAATTCGCTCTATTGATAATCGCCTCATCGTCAAATTTGAGCCCATATATCTCATTTTCCGTGAGAGATATCAAAAAGTGGTCAACTGATAAAATATTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATACCTTTCAAAAGGAGTGAGATATATAGGCTCAAAGTGGACGGACAGGGTGGCGTTCTATTAGAGTGTTTACGGTGATTGAAATTGATTATCGATAGAGCGAATTTGCGCTGAAACTCATATTTCTTATTTTGTGATTTTCTATTCTATTCCTTTTCTGAAAATCTAATCTTTGTAAAAAAAAGTTCTGAAAATAAAAATTTTATTTAATTAGTTTTTAGGAAATTCAGGAAATTCAGTAAAATCAGGAACTCAGAAAATCAGAAATTCGAAAAATCAAAAATTCAGAAATTCAGAAATCCAGGAATTCAGAAATTCAGAAATTCAGAAATTCATTAATTCAGAAATTCAGAAATTCAGAATTTCAGAATTTCAGAAATTCAGAAATCCAGGAATTCAGAAATTCAGAAATTCAGAAATTCATTAATTCAGAAATTCAGAAATTCAGAATTTCAGAATTTCAGAAATTCAGAAATCCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGAA</canonical>
            <polymorphic>TTTTTGAAATTTCTCGAATTTCGGAAATTTTGAATTTTTTCAAAAAAAAAGGTATTTTTTCAAAATCTCAATTTTTCCGTTTTTTTTTGTAAATTTTCATTTCCTGTGCCAAGAATTTTTTTCTGTCATCTTGTCTTTCTTCATTTCTTTTTGAGATTCGATTTATATATTTTTTTTCCTGTCAAATGCGCTCTAATGCACTTTTTTTAAAATTTATCATCCTTAAATATCTAAACCCTGGGAATTTACACCGTTGATTTTTTTTTGAAATTCGAATTTAATATTTTTCTGAAACATTCCACCAATTCTTTGTTGCATTCCGACAATTTTTCTTGTTCTTTGTAACAAATTCGCTCTATTGATAATCGCCTCATCGTCAAATTTGAGCCCATATATCTCATTTTCCGTGAGAGATATCAAAAAGTGGTCAACTGATAAAATATTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATACCTTTCAAAAKGAGTGAGATATATAGGCTCAAAGTGGACGGACAGGGTGGCGTTCTATTAGAGTGTTTACGGTGATTGAAATTGATTATCGATAGAGCGAATTTGCGCTGAAACTCATATTTCTTATTTTGTGATTTTCTATTCTATTCCTTTTCTGAAAATCTAATCTTTGTAAAAAAAAGTTCTGAAAATAAAAATTTTATTTAATTAGTTTTTAGGAAATTCAGGAAATTCAGTAAAATCAGGAACTCAGAAAATCAGAAATTCGAAAAATCAAAAATTCAGAAATTCAGAAATCCAGGAATTCAGAAATTCAGAAATTCAGAAATTCATTAATTCAGAAATTCAGAAATTCAGAATTTCAGAATTTCAGAAATTCAGAAATCCAGGAATTCAGAAATTCAGAAATTCAGAAATTCATTAATTCAGAAATTCAGAAATTCAGAATTTCAGAATTTCAGAAATTCAGAAATCCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAATTTTTCTTGTTCTTTGTAA</pcr_primer_p1>
		<pcr_primer_p2>TCGCTCTATCGATAATCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>GACAATTTTTCTTGTTCTTTGTAACAAATTCGCTCTATTGATAATCGCCTCATCGTCAAATTTGAGCCCATATATCTCATTTTCCGTGAGAGATATCAAAAAGTGGTCAACTGATAAAATATTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATACCTTTCAAAAGGAGTGAGATATATAGGCTCAAAGTGGACGGACAGGGTGGCGTTCTATTAGAGTGTTTACGGTGATTGAAATTGATTATCGATAGAGCGA</canonical_amplicon>
		<polymorphic_amplicon>GACAATTTTTCTTGTTCTTTGTAACAAATTCGCTCTATTGATAATCGCCTCATCGTCAAATTTGAGCCCATATATCTCATTTTCCGTGAGAGATATCAAAAAGTGGTCAACTGATAAAATATTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATACCTTTCAAAAKGAGTGAGATATATAGGCTCAAAGTGGACGGACAGGGTGGCGTTCTATTAGAGTGTTTACGGTGATTGAAATTGATTATCGATAGAGCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34735</snp_id>
        <super_contig>c009300673.Contig1</super_contig>
        <contig_pos>46936</contig_pos>
        <strand></strand>
        <context>ctttcaaaak[G/A]agtgagatat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATCATGATAAACATTTTATCAGTTGACAACTTTTTGATACCTTTCAAAAG</left_flank>
        <right_flank>AGTGAGATATATAGGCTCAAAGTGGACGGACAGGGTGGCGTTCTATTAGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGAAATTTCTCGAATTTCGGAAATTTTGAATTTTTTCAAAAAAAAAGGTATTTTTTCAAAATCTCAATTTTTCCGTTTTTTTTTGTAAATTTTCATTTCCTGTGCCAAGAATTTTTTTCTGTCATCTTGTCTTTCTTCATTTCTTTTTGAGATTCGATTTATATATTTTTTTTCCTGTCAAATGCGCTCTAATGCACTTTTTTTAAAATTTATCATCCTTAAATATCTAAACCCTGGGAATTTACACCGTTGATTTTTTTTTGAAATTCGAATTTAATATTTTTCTGAAACATTCCACCAATTCTTTGTTGCATTCCGACAATTTTTCTTGTTCTTTGTAACAAATTCGCTCTATTGATAATCGCCTCATCGTCAAATTTGAGCCCATATATCTCATTTTCCGTGAGAGATATCAAAAAGTGGTCAACTGATAAAATATTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATACCTTTCAAAAGGAGTGAGATATATAGGCTCAAAGTGGACGGACAGGGTGGCGTTCTATTAGAGTGTTTACGGTGATTGAAATTGATTATCGATAGAGCGAATTTGCGCTGAAACTCATATTTCTTATTTTGTGATTTTCTATTCTATTCCTTTTCTGAAAATCTAATCTTTGTAAAAAAAAGTTCTGAAAATAAAAATTTTATTTAATTAGTTTTTAGGAAATTCAGGAAATTCAGTAAAATCAGGAACTCAGAAAATCAGAAATTCGAAAAATCAAAAATTCAGAAATTCAGAAATCCAGGAATTCAGAAATTCAGAAATTCAGAAATTCATTAATTCAGAAATTCAGAAATTCAGAATTTCAGAATTTCAGAAATTCAGAAATCCAGGAATTCAGAAATTCAGAAATTCAGAAATTCATTAATTCAGAAATTCAGAAATTCAGAATTTCAGAATTTCAGAAATTCAGAAATCCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGAAA</canonical>
            <polymorphic>TTTTGAAATTTCTCGAATTTCGGAAATTTTGAATTTTTTCAAAAAAAAAGGTATTTTTTCAAAATCTCAATTTTTCCGTTTTTTTTTGTAAATTTTCATTTCCTGTGCCAAGAATTTTTTTCTGTCATCTTGTCTTTCTTCATTTCTTTTTGAGATTCGATTTATATATTTTTTTTCCTGTCAAATGCGCTCTAATGCACTTTTTTTAAAATTTATCATCCTTAAATATCTAAACCCTGGGAATTTACACCGTTGATTTTTTTTTGAAATTCGAATTTAATATTTTTCTGAAACATTCCACCAATTCTTTGTTGCATTCCGACAATTTTTCTTGTTCTTTGTAACAAATTCGCTCTATTGATAATCGCCTCATCGTCAAATTTGAGCCCATATATCTCATTTTCCGTGAGAGATATCAAAAAGTGGTCAACTGATAAAATATTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATACCTTTCAAAAGRAGTGAGATATATAGGCTCAAAGTGGACGGACAGGGTGGCGTTCTATTAGAGTGTTTACGGTGATTGAAATTGATTATCGATAGAGCGAATTTGCGCTGAAACTCATATTTCTTATTTTGTGATTTTCTATTCTATTCCTTTTCTGAAAATCTAATCTTTGTAAAAAAAAGTTCTGAAAATAAAAATTTTATTTAATTAGTTTTTAGGAAATTCAGGAAATTCAGTAAAATCAGGAACTCAGAAAATCAGAAATTCGAAAAATCAAAAATTCAGAAATTCAGAAATCCAGGAATTCAGAAATTCAGAAATTCAGAAATTCATTAATTCAGAAATTCAGAAATTCAGAATTTCAGAATTTCAGAAATTCAGAAATCCAGGAATTCAGAAATTCAGAAATTCAGAAATTCATTAATTCAGAAATTCAGAAATTCAGAATTTCAGAATTTCAGAAATTCAGAAATCCAGGAATTCAGAAATTCAGAAATTCAGAAATTCAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAATTTTTCTTGTTCTTTGTAA</pcr_primer_p1>
		<pcr_primer_p2>TCGCTCTATCGATAATCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>GACAATTTTTCTTGTTCTTTGTAACAAATTCGCTCTATTGATAATCGCCTCATCGTCAAATTTGAGCCCATATATCTCATTTTCCGTGAGAGATATCAAAAAGTGGTCAACTGATAAAATATTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATACCTTTCAAAAGGAGTGAGATATATAGGCTCAAAGTGGACGGACAGGGTGGCGTTCTATTAGAGTGTTTACGGTGATTGAAATTGATTATCGATAGAGCGA</canonical_amplicon>
		<polymorphic_amplicon>GACAATTTTTCTTGTTCTTTGTAACAAATTCGCTCTATTGATAATCGCCTCATCGTCAAATTTGAGCCCATATATCTCATTTTCCGTGAGAGATATCAAAAAGTGGTCAACTGATAAAATATTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATACCTTTCAAAAGRAGTGAGATATATAGGCTCAAAGTGGACGGACAGGGTGGCGTTCTATTAGAGTGTTTACGGTGATTGAAATTGATTATCGATAGAGCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34736</snp_id>
        <super_contig>c009401103.Contig1</super_contig>
        <contig_pos>3439</contig_pos>
        <strand></strand>
        <context>TTTTCGTGCT[T/C]TATAAATGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCAATATTTCTGAAAATTTATTATAGGTTTTAAATGATACTTTTCGTGCT</left_flank>
        <right_flank>TATAAATGGAACAAGTTGATTACAAAAAATTGGATAGGGATCAACTACGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTGATTGAGTATCCAGCATTACTTCTATCTGAATTATCTTGAAGATAACTTACAATTAGATTACTTACAACTTGAGGTGGAGAAGAACTAGGTAGAGAGGGAGGTAGGATTACTGAGGGTTGCTTAATGAGACTTTTACGATTTGTCTTTGGTGTCGNNNNNNNNNNNGAAGGAGATTTAAAGTTGTTGAGAGTTTCTACTATTTTATTCTTTTCATCAATTATTTCTTCTTGTAGTTTTTTGTGGATTCTAAAATAGGTTTAAATACTTCAATTCTATAATCTTCTACATGTTCTAAATCTGATCGCTCTTGTAAATTCTTGATTTTATGCTCTTTCCGATTTTTCAAAAAGTCTTGAACAATGAAATTTCGCTTTTTAGGGTCATATATCTCAACTACAGAATGCATTTATTACAGGAAATATCATCGATTTTAGGTTGATTTATTCAATATTTCTGAAAATTTATTATAGGTTTTAAATGATACTTTTCGTGCTTTATAAATGGAACAAGTTGATTACAAAAAATTGGATAGGGATCAACTACGAAAACTTGTAAGAAACAGAACTAACACAAGTAGAGATGATGTTAGAAATATGAGCGTGCCTGAAATGCGTAAAATACTCAAACAGCTGGATATAGATGAACTTAGCGAAAAGTCAAATCTTCAAATGATGAATCTATTTCCCTTCGATGAAACTGTCTTTAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTGGAAATTCTAAAACATTAGAATCCTTTTTAGATAAGAAAGGGCCTGATATTGTGAAAAAAATTTATGAAAATAGTGTGAAAATATATGTATCCTTAGAATGTGAAATGATAAAAGAAGGTACAGAAGATACCCAAGTAGCTCATTTGACTACAAAAAGTGTATTATTGAATCCAGGTGATAGTAGAATTGACTTCATGAAAAATATTAAATCTGATTTAGTAAATAGATTAGAACATTATCAA</canonical>
            <polymorphic>ACTTGATTGAGTATCCAGCATTACTTCTATCTGAATTATCTTGAAGATAACTTACAATTAGATTACTTACAACTTGAGGTGGAGAAGAACTAGGTAGAGAGGGAGGTAGGATTACTGAGGGTTGCTTAATGAGACTTTTACGATTTGTCTTTGGTGTCGNNNNNNNNNNNGAAGGAGATTTAAAGTTGTTGAGAGTTTCTACTATTTTATTCTTTTCATCAATTATTTCTTCTTGTAGTTTTTTGTGGATTCTAAAATAGGTTTAAATACTTCAATTCTATAATCTTCTACATGTTCTAAATCTGATCGCTCTTGTAAATTCTTGATTTTATGCTCTTTCCGATTTTTCAAAAAGTCTTGAACAATGAAATTTCGCTTTTTAGGGTCATATATCTCAACTACAGAATGCATTTATTACAGGAAATATCATCGATTTTAGGTTGATTTATTCAATATTTCTGAAAATTTATTATAGGTTTTAAATGATACTTTTCGTGCTYTATAAATGGAACAAGTTGATTACAAAAAATTGGATAGGGATCAACTACGAAAACTTGTAAGAAACAGAACTAACACAAGTAGAGATGATGTTAGAAATATGAGCGTGCCTGAAATGCGTAAAATACTCAAACAGCTGGATATAGATGAACTTAGCGAAAAGTCAAATCTTCAAATGATGAATCTATTTCCCTTCGATGAAACTGTCTTTAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTGGAAATTCTAAAACATTAGAATCCTTTTTAGATAAGAAAGGGCCTGATATTGTGAAAAAAATTTATGAAAATAGTGTGAAAATATATGTATCCTTAGAATGTGAAATGATAAAAGAAGGTACAGAAGATACCCAAGTAGCTCATTTGACTACAAAAAGTGTATTATTGAATCCAGGTGATAGTAGAATTGACTTCATGAAAAATATTAAATCTGATTTAGTAAATAGATTAGAACATTATCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTGTAAATTCTTGATTTTATGC</pcr_primer_p1>
		<pcr_primer_p2>TTACAAGTTTTCGTAGTTGATCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTGTAAATTCTTGATTTTATGCTCTTTCCGATTTTTCAAAAAGTCTTGAACAATGAAATTTCGCTTTTTAGGGTCATATATCTCAACTACAGAATGCATTTATTACAGGAAATATCATCGATTTTAGGTTGATTTATTCAATATTTCTGAAAATTTATTATAGGTTTTAAATGATACTTTTCGTGCTTTATAAATGGAACAAGTTGATTACAAAAAATTGGATAGGGATCAACTACGAAAACTTGTAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTGTAAATTCTTGATTTTATGCTCTTTCCGATTTTTCAAAAAGTCTTGAACAATGAAATTTCGCTTTTTAGGGTCATATATCTCAACTACAGAATGCATTTATTACAGGAAATATCATCGATTTTAGGTTGATTTATTCAATATTTCTGAAAATTTATTATAGGTTTTAAATGATACTTTTCGTGCTYTATAAATGGAACAAGTTGATTACAAAAAATTGGATAGGGATCAACTACGAAAACTTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34737</snp_id>
        <super_contig>c009401103.Contig1</super_contig>
        <contig_pos>3594</contig_pos>
        <strand></strand>
        <context>ATGAACTTAG[C/T]GAAAAGTCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGCCTGAAATGCGTAAAATACTCAAACAGCTGGATATAGATGAACTTAG</left_flank>
        <right_flank>GAAAAGTCAAATCTTCAAATGATGAATCTATTTCCCTTCGATGAAACTGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCGNNNNNNNNNNNGAAGGAGATTTAAAGTTGTTGAGAGTTTCTACTATTTTATTCTTTTCATCAATTATTTCTTCTTGTAGTTTTTTGTGGATTCTAAAATAGGTTTAAATACTTCAATTCTATAATCTTCTACATGTTCTAAATCTGATCGCTCTTGTAAATTCTTGATTTTATGCTCTTTCCGATTTTTCAAAAAGTCTTGAACAATGAAATTTCGCTTTTTAGGGTCATATATCTCAACTACAGAATGCATTTATTACAGGAAATATCATCGATTTTAGGTTGATTTATTCAATATTTCTGAAAATTTATTATAGGTTTTAAATGATACTTTTCGTGCTTTATAAATGGAACAAGTTGATTACAAAAAATTGGATAGGGATCAACTACGAAAACTTGTAAGAAACAGAACTAACACAAGTAGAGATGATGTTAGAAATATGAGCGTGCCTGAAATGCGTAAAATACTCAAACAGCTGGATATAGATGAACTTAGCGAAAAGTCAAATCTTCAAATGATGAATCTATTTCCCTTCGATGAAACTGTCTTTAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTGGAAATTCTAAAACATTAGAATCCTTTTTAGATAAGAAAGGGCCTGATATTGTGAAAAAAATTTATGAAAATAGTGTGAAAATATATGTATCCTTAGAATGTGAAATGATAAAAGAAGGTACAGAAGATACCCAAGTAGCTCATTTGACTACAAAAAGTGTATTATTGAATCCAGGTGATAGTAGAATTGACTTCATGAAAAATATTAAATCTGATTTAGTAAATAGATTAGAACATTATCAAAGCAGAGGATCAGGATTTAGATTGAATAGAATTATTGGCTTGAGAATGTCTCAAACTAAGATTATGCCATTATCAGGATCAAAATATATTGAATTACCAGATTGGATAAAAAATAAAAAAGCAGTAGTCAATGTTCAAAACAAAGATGAAAAATG</canonical>
            <polymorphic>GTCGNNNNNNNNNNNGAAGGAGATTTAAAGTTGTTGAGAGTTTCTACTATTTTATTCTTTTCATCAATTATTTCTTCTTGTAGTTTTTTGTGGATTCTAAAATAGGTTTAAATACTTCAATTCTATAATCTTCTACATGTTCTAAATCTGATCGCTCTTGTAAATTCTTGATTTTATGCTCTTTCCGATTTTTCAAAAAGTCTTGAACAATGAAATTTCGCTTTTTAGGGTCATATATCTCAACTACAGAATGCATTTATTACAGGAAATATCATCGATTTTAGGTTGATTTATTCAATATTTCTGAAAATTTATTATAGGTTTTAAATGATACTTTTCGTGCTTTATAAATGGAACAAGTTGATTACAAAAAATTGGATAGGGATCAACTACGAAAACTTGTAAGAAACAGAACTAACACAAGTAGAGATGATGTTAGAAATATGAGCGTGCCTGAAATGCGTAAAATACTCAAACAGCTGGATATAGATGAACTTAGYGAAAAGTCAAATCTTCAAATGATGAATCTATTTCCCTTCGATGAAACTGTCTTTAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTGGAAATTCTAAAACATTAGAATCCTTTTTAGATAAGAAAGGGCCTGATATTGTGAAAAAAATTTATGAAAATAGTGTGAAAATATATGTATCCTTAGAATGTGAAATGATAAAAGAAGGTACAGAAGATACCCAAGTAGCTCATTTGACTACAAAAAGTGTATTATTGAATCCAGGTGATAGTAGAATTGACTTCATGAAAAATATTAAATCTGATTTAGTAAATAGATTAGAACATTATCAAAGCAGAGGATCAGGATTTAGATTGAATAGAATTATTGGCTTGAGAATGTCTCAAACTAAGATTATGCCATTATCAGGATCAAAATATATTGAATTACCAGATTGGATAAAAAATAAAAAAGCAGTAGTCAATGTTCAAAACAAAGATGAAAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTGGATAGGGATCAACTAC</pcr_primer_p1>
		<pcr_primer_p2>ATGTTTTAGAATTTCCACTGTGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAATTGGATAGGGATCAACTACGAAAACTTGTAAGAAACAGAACTAACACAAGTAGAGATGATGTTAGAAATATGAGCGTGCCTGAAATGCGTAAAATACTCAAACAGCTGGATATAGATGAACTTAGCGAAAAGTCAAATCTTCAAATGATGAATCTATTTCCCTTCGATGAAACTGTCTTTAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTGGAAATTCTAAAACAT</canonical_amplicon>
		<polymorphic_amplicon>AAAATTGGATAGGGATCAACTACGAAAACTTGTAAGAAACAGAACTAACACAAGTAGAGATGATGTTAGAAATATGAGCGTGCCTGAAATGCGTAAAATACTCAAACAGCTGGATATAGATGAACTTAGYGAAAAGTCAAATCTTCAAATGATGAATCTATTTCCCTTCGATGAAACTGTCTTTAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTGGAAATTCTAAAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34738</snp_id>
        <super_contig>c009401103.Contig1</super_contig>
        <contig_pos>3617</contig_pos>
        <strand></strand>
        <context>CTTCAAATGA[T/G]GAATCTATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CAAACAGCTGGATATAGATGAACTTAGCGAAAAGTCAAATCTTCAAATGA</left_flank>
        <right_flank>GAATCTATTTCCCTTCGATGAAACTGTCTTTAGTGATTACAAAGAAGTTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAAAGTTGTTGAGAGTTTCTACTATTTTATTCTTTTCATCAATTATTTCTTCTTGTAGTTTTTTGTGGATTCTAAAATAGGTTTAAATACTTCAATTCTATAATCTTCTACATGTTCTAAATCTGATCGCTCTTGTAAATTCTTGATTTTATGCTCTTTCCGATTTTTCAAAAAGTCTTGAACAATGAAATTTCGCTTTTTAGGGTCATATATCTCAACTACAGAATGCATTTATTACAGGAAATATCATCGATTTTAGGTTGATTTATTCAATATTTCTGAAAATTTATTATAGGTTTTAAATGATACTTTTCGTGCTTTATAAATGGAACAAGTTGATTACAAAAAATTGGATAGGGATCAACTACGAAAACTTGTAAGAAACAGAACTAACACAAGTAGAGATGATGTTAGAAATATGAGCGTGCCTGAAATGCGTAAAATACTCAAACAGCTGGATATAGATGAACTTAGCGAAAAGTCAAATCTTCAAATGATGAATCTATTTCCCTTCGATGAAACTGTCTTTAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTGGAAATTCTAAAACATTAGAATCCTTTTTAGATAAGAAAGGGCCTGATATTGTGAAAAAAATTTATGAAAATAGTGTGAAAATATATGTATCCTTAGAATGTGAAATGATAAAAGAAGGTACAGAAGATACCCAAGTAGCTCATTTGACTACAAAAAGTGTATTATTGAATCCAGGTGATAGTAGAATTGACTTCATGAAAAATATTAAATCTGATTTAGTAAATAGATTAGAACATTATCAAAGCAGAGGATCAGGATTTAGATTGAATAGAATTATTGGCTTGAGAATGTCTCAAACTAAGATTATGCCATTATCAGGATCAAAATATATTGAATTACCAGATTGGATAAAAAATAAAAAAGCAGTAGTCAATGTTCAAAACAAAGATGAAAAATGTTTTATGTGGTGTATTCTAGCAC</canonical>
            <polymorphic>TTTAAAGTTGTTGAGAGTTTCTACTATTTTATTCTTTTCATCAATTATTTCTTCTTGTAGTTTTTTGTGGATTCTAAAATAGGTTTAAATACTTCAATTCTATAATCTTCTACATGTTCTAAATCTGATCGCTCTTGTAAATTCTTGATTTTATGCTCTTTCCGATTTTTCAAAAAGTCTTGAACAATGAAATTTCGCTTTTTAGGGTCATATATCTCAACTACAGAATGCATTTATTACAGGAAATATCATCGATTTTAGGTTGATTTATTCAATATTTCTGAAAATTTATTATAGGTTTTAAATGATACTTTTCGTGCTTTATAAATGGAACAAGTTGATTACAAAAAATTGGATAGGGATCAACTACGAAAACTTGTAAGAAACAGAACTAACACAAGTAGAGATGATGTTAGAAATATGAGCGTGCCTGAAATGCGTAAAATACTCAAACAGCTGGATATAGATGAACTTAGCGAAAAGTCAAATCTTCAAATGAKGAATCTATTTCCCTTCGATGAAACTGTCTTTAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTGGAAATTCTAAAACATTAGAATCCTTTTTAGATAAGAAAGGGCCTGATATTGTGAAAAAAATTTATGAAAATAGTGTGAAAATATATGTATCCTTAGAATGTGAAATGATAAAAGAAGGTACAGAAGATACCCAAGTAGCTCATTTGACTACAAAAAGTGTATTATTGAATCCAGGTGATAGTAGAATTGACTTCATGAAAAATATTAAATCTGATTTAGTAAATAGATTAGAACATTATCAAAGCAGAGGATCAGGATTTAGATTGAATAGAATTATTGGCTTGAGAATGTCTCAAACTAAGATTATGCCATTATCAGGATCAAAATATATTGAATTACCAGATTGGATAAAAAATAAAAAAGCAGTAGTCAATGTTCAAAACAAAGATGAAAAATGTTTTATGTGGTGTATTCTAGCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTGGATAGGGATCAACTAC</pcr_primer_p1>
		<pcr_primer_p2>ATGTTTTAGAATTTCCACTGTGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAATTGGATAGGGATCAACTACGAAAACTTGTAAGAAACAGAACTAACACAAGTAGAGATGATGTTAGAAATATGAGCGTGCCTGAAATGCGTAAAATACTCAAACAGCTGGATATAGATGAACTTAGCGAAAAGTCAAATCTTCAAATGATGAATCTATTTCCCTTCGATGAAACTGTCTTTAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTGGAAATTCTAAAACAT</canonical_amplicon>
		<polymorphic_amplicon>AAAATTGGATAGGGATCAACTACGAAAACTTGTAAGAAACAGAACTAACACAAGTAGAGATGATGTTAGAAATATGAGCGTGCCTGAAATGCGTAAAATACTCAAACAGCTGGATATAGATGAACTTAGCGAAAAGTCAAATCTTCAAATGAKGAATCTATTTCCCTTCGATGAAACTGTCTTTAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTGGAAATTCTAAAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34739</snp_id>
        <super_contig>c009401103.Contig1</super_contig>
        <contig_pos>3630</contig_pos>
        <strand></strand>
        <context>ATCTATTTCC[C/T]TTCGATGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAGATGAACTTAGCGAAAAGTCAAATCTTCAAATGATGAATCTATTTCC</left_flank>
        <right_flank>TTCGATGAAACTGTCTTTAGTGATTACAAAGAAGTTGGTGATACGTTGAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGTTTCTACTATTTTATTCTTTTCATCAATTATTTCTTCTTGTAGTTTTTTGTGGATTCTAAAATAGGTTTAAATACTTCAATTCTATAATCTTCTACATGTTCTAAATCTGATCGCTCTTGTAAATTCTTGATTTTATGCTCTTTCCGATTTTTCAAAAAGTCTTGAACAATGAAATTTCGCTTTTTAGGGTCATATATCTCAACTACAGAATGCATTTATTACAGGAAATATCATCGATTTTAGGTTGATTTATTCAATATTTCTGAAAATTTATTATAGGTTTTAAATGATACTTTTCGTGCTTTATAAATGGAACAAGTTGATTACAAAAAATTGGATAGGGATCAACTACGAAAACTTGTAAGAAACAGAACTAACACAAGTAGAGATGATGTTAGAAATATGAGCGTGCCTGAAATGCGTAAAATACTCAAACAGCTGGATATAGATGAACTTAGCGAAAAGTCAAATCTTCAAATGATGAATCTATTTCCCTTCGATGAAACTGTCTTTAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTGGAAATTCTAAAACATTAGAATCCTTTTTAGATAAGAAAGGGCCTGATATTGTGAAAAAAATTTATGAAAATAGTGTGAAAATATATGTATCCTTAGAATGTGAAATGATAAAAGAAGGTACAGAAGATACCCAAGTAGCTCATTTGACTACAAAAAGTGTATTATTGAATCCAGGTGATAGTAGAATTGACTTCATGAAAAATATTAAATCTGATTTAGTAAATAGATTAGAACATTATCAAAGCAGAGGATCAGGATTTAGATTGAATAGAATTATTGGCTTGAGAATGTCTCAAACTAAGATTATGCCATTATCAGGATCAAAATATATTGAATTACCAGATTGGATAAAAAATAAAAAAGCAGTAGTCAATGTTCAAAACAAAGATGAAAAATGTTTTATGTGGTGTATTCTAGCACACTTATATCCAGT</canonical>
            <polymorphic>AGAGTTTCTACTATTTTATTCTTTTCATCAATTATTTCTTCTTGTAGTTTTTTGTGGATTCTAAAATAGGTTTAAATACTTCAATTCTATAATCTTCTACATGTTCTAAATCTGATCGCTCTTGTAAATTCTTGATTTTATGCTCTTTCCGATTTTTCAAAAAGTCTTGAACAATGAAATTTCGCTTTTTAGGGTCATATATCTCAACTACAGAATGCATTTATTACAGGAAATATCATCGATTTTAGGTTGATTTATTCAATATTTCTGAAAATTTATTATAGGTTTTAAATGATACTTTTCGTGCTTTATAAATGGAACAAGTTGATTACAAAAAATTGGATAGGGATCAACTACGAAAACTTGTAAGAAACAGAACTAACACAAGTAGAGATGATGTTAGAAATATGAGCGTGCCTGAAATGCGTAAAATACTCAAACAGCTGGATATAGATGAACTTAGCGAAAAGTCAAATCTTCAAATGATGAATCTATTTCCYTTCGATGAAACTGTCTTTAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTGGAAATTCTAAAACATTAGAATCCTTTTTAGATAAGAAAGGGCCTGATATTGTGAAAAAAATTTATGAAAATAGTGTGAAAATATATGTATCCTTAGAATGTGAAATGATAAAAGAAGGTACAGAAGATACCCAAGTAGCTCATTTGACTACAAAAAGTGTATTATTGAATCCAGGTGATAGTAGAATTGACTTCATGAAAAATATTAAATCTGATTTAGTAAATAGATTAGAACATTATCAAAGCAGAGGATCAGGATTTAGATTGAATAGAATTATTGGCTTGAGAATGTCTCAAACTAAGATTATGCCATTATCAGGATCAAAATATATTGAATTACCAGATTGGATAAAAAATAAAAAAGCAGTAGTCAATGTTCAAAACAAAGATGAAAAATGTTTTATGTGGTGTATTCTAGCACACTTATATCCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTGGATAGGGATCAACTAC</pcr_primer_p1>
		<pcr_primer_p2>ATGTTTTAGAATTTCCACTGTGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAATTGGATAGGGATCAACTACGAAAACTTGTAAGAAACAGAACTAACACAAGTAGAGATGATGTTAGAAATATGAGCGTGCCTGAAATGCGTAAAATACTCAAACAGCTGGATATAGATGAACTTAGCGAAAAGTCAAATCTTCAAATGATGAATCTATTTCCCTTCGATGAAACTGTCTTTAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTGGAAATTCTAAAACAT</canonical_amplicon>
		<polymorphic_amplicon>AAAATTGGATAGGGATCAACTACGAAAACTTGTAAGAAACAGAACTAACACAAGTAGAGATGATGTTAGAAATATGAGCGTGCCTGAAATGCGTAAAATACTCAAACAGCTGGATATAGATGAACTTAGCGAAAAGTCAAATCTTCAAATGATGAATCTATTTCCYTTCGATGAAACTGTCTTTAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTGGAAATTCTAAAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34740</snp_id>
        <super_contig>c009401103.Contig1</super_contig>
        <contig_pos>3647</contig_pos>
        <strand></strand>
        <context>GAAACTGTCT[T/C]TAGTGATTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAGTCAAATCTTCAAATGATGAATCTATTTCCCTTCGATGAAACTGTCT</left_flank>
        <right_flank>TAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTTTTCATCAATTATTTCTTCTTGTAGTTTTTTGTGGATTCTAAAATAGGTTTAAATACTTCAATTCTATAATCTTCTACATGTTCTAAATCTGATCGCTCTTGTAAATTCTTGATTTTATGCTCTTTCCGATTTTTCAAAAAGTCTTGAACAATGAAATTTCGCTTTTTAGGGTCATATATCTCAACTACAGAATGCATTTATTACAGGAAATATCATCGATTTTAGGTTGATTTATTCAATATTTCTGAAAATTTATTATAGGTTTTAAATGATACTTTTCGTGCTTTATAAATGGAACAAGTTGATTACAAAAAATTGGATAGGGATCAACTACGAAAACTTGTAAGAAACAGAACTAACACAAGTAGAGATGATGTTAGAAATATGAGCGTGCCTGAAATGCGTAAAATACTCAAACAGCTGGATATAGATGAACTTAGCGAAAAGTCAAATCTTCAAATGATGAATCTATTTCCCTTCGATGAAACTGTCTTTAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTGGAAATTCTAAAACATTAGAATCCTTTTTAGATAAGAAAGGGCCTGATATTGTGAAAAAAATTTATGAAAATAGTGTGAAAATATATGTATCCTTAGAATGTGAAATGATAAAAGAAGGTACAGAAGATACCCAAGTAGCTCATTTGACTACAAAAAGTGTATTATTGAATCCAGGTGATAGTAGAATTGACTTCATGAAAAATATTAAATCTGATTTAGTAAATAGATTAGAACATTATCAAAGCAGAGGATCAGGATTTAGATTGAATAGAATTATTGGCTTGAGAATGTCTCAAACTAAGATTATGCCATTATCAGGATCAAAATATATTGAATTACCAGATTGGATAAAAAATAAAAAAGCAGTAGTCAATGTTCAAAACAAAGATGAAAAATGTTTTATGTGGTGTATTCTAGCACACTTATATCCAGTTGAAGAACATCCTGAAC</canonical>
            <polymorphic>ATTCTTTTCATCAATTATTTCTTCTTGTAGTTTTTTGTGGATTCTAAAATAGGTTTAAATACTTCAATTCTATAATCTTCTACATGTTCTAAATCTGATCGCTCTTGTAAATTCTTGATTTTATGCTCTTTCCGATTTTTCAAAAAGTCTTGAACAATGAAATTTCGCTTTTTAGGGTCATATATCTCAACTACAGAATGCATTTATTACAGGAAATATCATCGATTTTAGGTTGATTTATTCAATATTTCTGAAAATTTATTATAGGTTTTAAATGATACTTTTCGTGCTTTATAAATGGAACAAGTTGATTACAAAAAATTGGATAGGGATCAACTACGAAAACTTGTAAGAAACAGAACTAACACAAGTAGAGATGATGTTAGAAATATGAGCGTGCCTGAAATGCGTAAAATACTCAAACAGCTGGATATAGATGAACTTAGCGAAAAGTCAAATCTTCAAATGATGAATCTATTTCCCTTCGATGAAACTGTCTYTAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTGGAAATTCTAAAACATTAGAATCCTTTTTAGATAAGAAAGGGCCTGATATTGTGAAAAAAATTTATGAAAATAGTGTGAAAATATATGTATCCTTAGAATGTGAAATGATAAAAGAAGGTACAGAAGATACCCAAGTAGCTCATTTGACTACAAAAAGTGTATTATTGAATCCAGGTGATAGTAGAATTGACTTCATGAAAAATATTAAATCTGATTTAGTAAATAGATTAGAACATTATCAAAGCAGAGGATCAGGATTTAGATTGAATAGAATTATTGGCTTGAGAATGTCTCAAACTAAGATTATGCCATTATCAGGATCAAAATATATTGAATTACCAGATTGGATAAAAAATAAAAAAGCAGTAGTCAATGTTCAAAACAAAGATGAAAAATGTTTTATGTGGTGTATTCTAGCACACTTATATCCAGTTGAAGAACATCCTGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTGGATAGGGATCAACTAC</pcr_primer_p1>
		<pcr_primer_p2>ATGTTTTAGAATTTCCACTGTGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAATTGGATAGGGATCAACTACGAAAACTTGTAAGAAACAGAACTAACACAAGTAGAGATGATGTTAGAAATATGAGCGTGCCTGAAATGCGTAAAATACTCAAACAGCTGGATATAGATGAACTTAGCGAAAAGTCAAATCTTCAAATGATGAATCTATTTCCCTTCGATGAAACTGTCTTTAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTGGAAATTCTAAAACAT</canonical_amplicon>
		<polymorphic_amplicon>AAAATTGGATAGGGATCAACTACGAAAACTTGTAAGAAACAGAACTAACACAAGTAGAGATGATGTTAGAAATATGAGCGTGCCTGAAATGCGTAAAATACTCAAACAGCTGGATATAGATGAACTTAGCGAAAAGTCAAATCTTCAAATGATGAATCTATTTCCCTTCGATGAAACTGTCTYTAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTGGAAATTCTAAAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34741</snp_id>
        <super_contig>c009401103.Contig1</super_contig>
        <contig_pos>3754</contig_pos>
        <strand></strand>
        <context>TATTGTGAAA[A/G]WAATTTATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAAAACATTAGAATCCTTTTTAGATAAGAAAGGGCCTGATATTGTGAAA</left_flank>
        <right_flank>AAATTTATGAAAATAGTGTGAAAATATATGTATCCTTAGAATGTGAAATG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATTCTTGATTTTATGCTCTTTCCGATTTTTCAAAAAGTCTTGAACAATGAAATTTCGCTTTTTAGGGTCATATATCTCAACTACAGAATGCATTTATTACAGGAAATATCATCGATTTTAGGTTGATTTATTCAATATTTCTGAAAATTTATTATAGGTTTTAAATGATACTTTTCGTGCTTTATAAATGGAACAAGTTGATTACAAAAAATTGGATAGGGATCAACTACGAAAACTTGTAAGAAACAGAACTAACACAAGTAGAGATGATGTTAGAAATATGAGCGTGCCTGAAATGCGTAAAATACTCAAACAGCTGGATATAGATGAACTTAGCGAAAAGTCAAATCTTCAAATGATGAATCTATTTCCCTTCGATGAAACTGTCTTTAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTGGAAATTCTAAAACATTAGAATCCTTTTTAGATAAGAAAGGGCCTGATATTGTGAAAAAAATTTATGAAAATAGTGTGAAAATATATGTATCCTTAGAATGTGAAATGATAAAAGAAGGTACAGAAGATACCCAAGTAGCTCATTTGACTACAAAAAGTGTATTATTGAATCCAGGTGATAGTAGAATTGACTTCATGAAAAATATTAAATCTGATTTAGTAAATAGATTAGAACATTATCAAAGCAGAGGATCAGGATTTAGATTGAATAGAATTATTGGCTTGAGAATGTCTCAAACTAAGATTATGCCATTATCAGGATCAAAATATATTGAATTACCAGATTGGATAAAAAATAAAAAAGCAGTAGTCAATGTTCAAAACAAAGATGAAAAATGTTTTATGTGGTGTATTCTAGCACACTTATATCCAGTTGAAGAACATCCTGAACGAATAAGCAAATATAAAGAGCATGCTTCTAAAATTAATTTCGAAGGTTTCGAATTTCCTTTCCAAGTTAAAGATGTAGATAAGTTTGAGAAGAGAAATAACTTGGCT</canonical>
            <polymorphic>TAAATTCTTGATTTTATGCTCTTTCCGATTTTTCAAAAAGTCTTGAACAATGAAATTTCGCTTTTTAGGGTCATATATCTCAACTACAGAATGCATTTATTACAGGAAATATCATCGATTTTAGGTTGATTTATTCAATATTTCTGAAAATTTATTATAGGTTTTAAATGATACTTTTCGTGCTTTATAAATGGAACAAGTTGATTACAAAAAATTGGATAGGGATCAACTACGAAAACTTGTAAGAAACAGAACTAACACAAGTAGAGATGATGTTAGAAATATGAGCGTGCCTGAAATGCGTAAAATACTCAAACAGCTGGATATAGATGAACTTAGCGAAAAGTCAAATCTTCAAATGATGAATCTATTTCCCTTCGATGAAACTGTCTTTAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTGGAAATTCTAAAACATTAGAATCCTTTTTAGATAAGAAAGGGCCTGATATTGTGAAARAAATTTATGAAAATAGTGTGAAAATATATGTATCCTTAGAATGTGAAATGATAAAAGAAGGTACAGAAGATACCCAAGTAGCTCATTTGACTACAAAAAGTGTATTATTGAATCCAGGTGATAGTAGAATTGACTTCATGAAAAATATTAAATCTGATTTAGTAAATAGATTAGAACATTATCAAAGCAGAGGATCAGGATTTAGATTGAATAGAATTATTGGCTTGAGAATGTCTCAAACTAAGATTATGCCATTATCAGGATCAAAATATATTGAATTACCAGATTGGATAAAAAATAAAAAAGCAGTAGTCAATGTTCAAAACAAAGATGAAAAATGTTTTATGTGGTGTATTCTAGCACACTTATATCCAGTTGAAGAACATCCTGAACGAATAAGCAAATATAAAGAGCATGCTTCTAAAATTAATTTCGAAGGTTTCGAATTTCCTTTCCAAGTTAAAGATGTAGATAAGTTTGAGAAGAGAAATAACTTGGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAACAGCTGGATATAGATGAAC</pcr_primer_p1>
		<pcr_primer_p2>CCTTCTTTTATCATTTCACATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAACAGCTGGATATAGATGAACTTAGCGAAAAGTCAAATCTTCAAATGATGAATCTATTTCCCTTCGATGAAACTGTCTTTAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTGGAAATTCTAAAACATTAGAATCCTTTTTAGATAAGAAAGGGCCTGATATTGTGAAAAAAATTTATGAAAATAGTGTGAAAATATATGTATCCTTAGAATGTGAAATGATAAAAGAAGG</canonical_amplicon>
		<polymorphic_amplicon>CAAACAGCTGGATATAGATGAACTTAGCGAAAAGTCAAATCTTCAAATGATGAATCTATTTCCCTTCGATGAAACTGTCTTTAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTGGAAATTCTAAAACATTAGAATCCTTTTTAGATAAGAAAGGGCCTGATATTGTGAAARAAATTTATGAAAATAGTGTGAAAATATATGTATCCTTAGAATGTGAAATGATAAAAGAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34742</snp_id>
        <super_contig>c009401103.Contig1</super_contig>
        <contig_pos>3755</contig_pos>
        <strand></strand>
        <context>ATTGTGAAAR[A/T]AATTTATGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAAACATTAGAATCCTTTTTAGATAAGAAAGGGCCTGATATTGTGAAAA</left_flank>
        <right_flank>AATTTATGAAAATAGTGTGAAAATATATGTATCCTTAGAATGTGAAATGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTCTTGATTTTATGCTCTTTCCGATTTTTCAAAAAGTCTTGAACAATGAAATTTCGCTTTTTAGGGTCATATATCTCAACTACAGAATGCATTTATTACAGGAAATATCATCGATTTTAGGTTGATTTATTCAATATTTCTGAAAATTTATTATAGGTTTTAAATGATACTTTTCGTGCTTTATAAATGGAACAAGTTGATTACAAAAAATTGGATAGGGATCAACTACGAAAACTTGTAAGAAACAGAACTAACACAAGTAGAGATGATGTTAGAAATATGAGCGTGCCTGAAATGCGTAAAATACTCAAACAGCTGGATATAGATGAACTTAGCGAAAAGTCAAATCTTCAAATGATGAATCTATTTCCCTTCGATGAAACTGTCTTTAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTGGAAATTCTAAAACATTAGAATCCTTTTTAGATAAGAAAGGGCCTGATATTGTGAAAAAAATTTATGAAAATAGTGTGAAAATATATGTATCCTTAGAATGTGAAATGATAAAAGAAGGTACAGAAGATACCCAAGTAGCTCATTTGACTACAAAAAGTGTATTATTGAATCCAGGTGATAGTAGAATTGACTTCATGAAAAATATTAAATCTGATTTAGTAAATAGATTAGAACATTATCAAAGCAGAGGATCAGGATTTAGATTGAATAGAATTATTGGCTTGAGAATGTCTCAAACTAAGATTATGCCATTATCAGGATCAAAATATATTGAATTACCAGATTGGATAAAAAATAAAAAAGCAGTAGTCAATGTTCAAAACAAAGATGAAAAATGTTTTATGTGGTGTATTCTAGCACACTTATATCCAGTTGAAGAACATCCTGAACGAATAAGCAAATATAAAGAGCATGCTTCTAAAATTAATTTCGAAGGTTTCGAATTTCCTTTCCAAGTTAAAGATGTAGATAAGTTTGAGAAGAGAAATAACTTGGCTG</canonical>
            <polymorphic>AAATTCTTGATTTTATGCTCTTTCCGATTTTTCAAAAAGTCTTGAACAATGAAATTTCGCTTTTTAGGGTCATATATCTCAACTACAGAATGCATTTATTACAGGAAATATCATCGATTTTAGGTTGATTTATTCAATATTTCTGAAAATTTATTATAGGTTTTAAATGATACTTTTCGTGCTTTATAAATGGAACAAGTTGATTACAAAAAATTGGATAGGGATCAACTACGAAAACTTGTAAGAAACAGAACTAACACAAGTAGAGATGATGTTAGAAATATGAGCGTGCCTGAAATGCGTAAAATACTCAAACAGCTGGATATAGATGAACTTAGCGAAAAGTCAAATCTTCAAATGATGAATCTATTTCCCTTCGATGAAACTGTCTTTAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTGGAAATTCTAAAACATTAGAATCCTTTTTAGATAAGAAAGGGCCTGATATTGTGAAAAWAATTTATGAAAATAGTGTGAAAATATATGTATCCTTAGAATGTGAAATGATAAAAGAAGGTACAGAAGATACCCAAGTAGCTCATTTGACTACAAAAAGTGTATTATTGAATCCAGGTGATAGTAGAATTGACTTCATGAAAAATATTAAATCTGATTTAGTAAATAGATTAGAACATTATCAAAGCAGAGGATCAGGATTTAGATTGAATAGAATTATTGGCTTGAGAATGTCTCAAACTAAGATTATGCCATTATCAGGATCAAAATATATTGAATTACCAGATTGGATAAAAAATAAAAAAGCAGTAGTCAATGTTCAAAACAAAGATGAAAAATGTTTTATGTGGTGTATTCTAGCACACTTATATCCAGTTGAAGAACATCCTGAACGAATAAGCAAATATAAAGAGCATGCTTCTAAAATTAATTTCGAAGGTTTCGAATTTCCTTTCCAAGTTAAAGATGTAGATAAGTTTGAGAAGAGAAATAACTTGGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>443 297 95 57 56 51 1</canonical_bands>
                <polymorphic_bands>499 297 95 57 51 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAACAGCTGGATATAGATGAAC</pcr_primer_p1>
		<pcr_primer_p2>CCTTCTTTTATCATTTCACATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAACAGCTGGATATAGATGAACTTAGCGAAAAGTCAAATCTTCAAATGATGAATCTATTTCCCTTCGATGAAACTGTCTTTAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTGGAAATTCTAAAACATTAGAATCCTTTTTAGATAAGAAAGGGCCTGATATTGTGAAAAAAATTTATGAAAATAGTGTGAAAATATATGTATCCTTAGAATGTGAAATGATAAAAGAAGG</canonical_amplicon>
		<polymorphic_amplicon>CAAACAGCTGGATATAGATGAACTTAGCGAAAAGTCAAATCTTCAAATGATGAATCTATTTCCCTTCGATGAAACTGTCTTTAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTGGAAATTCTAAAACATTAGAATCCTTTTTAGATAAGAAAGGGCCTGATATTGTGAAAAWAATTTATGAAAATAGTGTGAAAATATATGTATCCTTAGAATGTGAAATGATAAAAGAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34743</snp_id>
        <super_contig>c009401103.Contig1</super_contig>
        <contig_pos>3843</contig_pos>
        <strand></strand>
        <context>TAGCTCATTT[G/A]ACTACAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAATGTGAAATGATAAAAGAAGGTACAGAAGATACCCAAGTAGCTCATTT</left_flank>
        <right_flank>ACTACAAAAAGTGTATTATTGAATCCAGGTGATAGTAGAATTGACTTCAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGCATTTATTACAGGAAATATCATCGATTTTAGGTTGATTTATTCAATATTTCTGAAAATTTATTATAGGTTTTAAATGATACTTTTCGTGCTTTATAAATGGAACAAGTTGATTACAAAAAATTGGATAGGGATCAACTACGAAAACTTGTAAGAAACAGAACTAACACAAGTAGAGATGATGTTAGAAATATGAGCGTGCCTGAAATGCGTAAAATACTCAAACAGCTGGATATAGATGAACTTAGCGAAAAGTCAAATCTTCAAATGATGAATCTATTTCCCTTCGATGAAACTGTCTTTAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTGGAAATTCTAAAACATTAGAATCCTTTTTAGATAAGAAAGGGCCTGATATTGTGAAAAAAATTTATGAAAATAGTGTGAAAATATATGTATCCTTAGAATGTGAAATGATAAAAGAAGGTACAGAAGATACCCAAGTAGCTCATTTGACTACAAAAAGTGTATTATTGAATCCAGGTGATAGTAGAATTGACTTCATGAAAAATATTAAATCTGATTTAGTAAATAGATTAGAACATTATCAAAGCAGAGGATCAGGATTTAGATTGAATAGAATTATTGGCTTGAGAATGTCTCAAACTAAGATTATGCCATTATCAGGATCAAAATATATTGAATTACCAGATTGGATAAAAAATAAAAAAGCAGTAGTCAATGTTCAAAACAAAGATGAAAAATGTTTTATGTGGTGTATTCTAGCACACTTATATCCAGTTGAAGAACATCCTGAACGAATAAGCAAATATAAAGAGCATGCTTCTAAAATTAATTTCGAAGGTTTCGAATTTCCTTTCCAAGTTAAAGATGTAGATAAGTTTGAGAAGAGAAATAACTTGGCTGTTAATATTGTAACTCATGATGTCTCAGGACCAGCAATAATTGAGTCATATAAAGTATCTAAAAACATCAACGTAGATTTAAGTAGAGT</canonical>
            <polymorphic>AATGCATTTATTACAGGAAATATCATCGATTTTAGGTTGATTTATTCAATATTTCTGAAAATTTATTATAGGTTTTAAATGATACTTTTCGTGCTTTATAAATGGAACAAGTTGATTACAAAAAATTGGATAGGGATCAACTACGAAAACTTGTAAGAAACAGAACTAACACAAGTAGAGATGATGTTAGAAATATGAGCGTGCCTGAAATGCGTAAAATACTCAAACAGCTGGATATAGATGAACTTAGCGAAAAGTCAAATCTTCAAATGATGAATCTATTTCCCTTCGATGAAACTGTCTTTAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTGGAAATTCTAAAACATTAGAATCCTTTTTAGATAAGAAAGGGCCTGATATTGTGAAAAAAATTTATGAAAATAGTGTGAAAATATATGTATCCTTAGAATGTGAAATGATAAAAGAAGGTACAGAAGATACCCAAGTAGCTCATTTRACTACAAAAAGTGTATTATTGAATCCAGGTGATAGTAGAATTGACTTCATGAAAAATATTAAATCTGATTTAGTAAATAGATTAGAACATTATCAAAGCAGAGGATCAGGATTTAGATTGAATAGAATTATTGGCTTGAGAATGTCTCAAACTAAGATTATGCCATTATCAGGATCAAAATATATTGAATTACCAGATTGGATAAAAAATAAAAAAGCAGTAGTCAATGTTCAAAACAAAGATGAAAAATGTTTTATGTGGTGTATTCTAGCACACTTATATCCAGTTGAAGAACATCCTGAACGAATAAGCAAATATAAAGAGCATGCTTCTAAAATTAATTTCGAAGGTTTCGAATTTCCTTTCCAAGTTAAAGATGTAGATAAGTTTGAGAAGAGAAATAACTTGGCTGTTAATATTGTAACTCATGATGTCTCAGGACCAGCAATAATTGAGTCATATAAAGTATCTAAAAACATCAACGTAGATTTAAGTAGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGATAAGAAAGGGCCTGATATT</pcr_primer_p1>
		<pcr_primer_p2>ATTCAATCTAAATCCTGATCCTC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TAGATAAGAAAGGGCCTGATATTGTGAAAAAAATTTATGAAAATAGTGTGAAAATATATGTATCCTTAGAATGTGAAATGATAAAAGAAGGTACAGAAGATACCCAAGTAGCTCATTTGACTACAAAAAGTGTATTATTGAATCCAGGTGATAGTAGAATTGACTTCATGAAAAATATTAAATCTGATTTAGTAAATAGATTAGAACATTATCAAAGCAGAGGATCAGGATTTAGATTGAAT</canonical_amplicon>
		<polymorphic_amplicon>TAGATAAGAAAGGGCCTGATATTGTGAAAAAAATTTATGAAAATAGTGTGAAAATATATGTATCCTTAGAATGTGAAATGATAAAAGAAGGTACAGAAGATACCCAAGTAGCTCATTTRACTACAAAAAGTGTATTATTGAATCCAGGTGATAGTAGAATTGACTTCATGAAAAATATTAAATCTGATTTAGTAAATAGATTAGAACATTATCAAAGCAGAGGATCAGGATTTAGATTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34744</snp_id>
        <super_contig>c009401103.Contig1</super_contig>
        <contig_pos>3856</contig_pos>
        <strand></strand>
        <context>TACAAAAAGT[G/A]TATTATTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAAAAGAAGGTACAGAAGATACCCAAGTAGCTCATTTGACTACAAAAAGT</left_flank>
        <right_flank>TATTATTGAATCCAGGTGATAGTAGAATTGACTTCATGAAAAATATTAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGGAAATATCATCGATTTTAGGTTGATTTATTCAATATTTCTGAAAATTTATTATAGGTTTTAAATGATACTTTTCGTGCTTTATAAATGGAACAAGTTGATTACAAAAAATTGGATAGGGATCAACTACGAAAACTTGTAAGAAACAGAACTAACACAAGTAGAGATGATGTTAGAAATATGAGCGTGCCTGAAATGCGTAAAATACTCAAACAGCTGGATATAGATGAACTTAGCGAAAAGTCAAATCTTCAAATGATGAATCTATTTCCCTTCGATGAAACTGTCTTTAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTGGAAATTCTAAAACATTAGAATCCTTTTTAGATAAGAAAGGGCCTGATATTGTGAAAAAAATTTATGAAAATAGTGTGAAAATATATGTATCCTTAGAATGTGAAATGATAAAAGAAGGTACAGAAGATACCCAAGTAGCTCATTTGACTACAAAAAGTGTATTATTGAATCCAGGTGATAGTAGAATTGACTTCATGAAAAATATTAAATCTGATTTAGTAAATAGATTAGAACATTATCAAAGCAGAGGATCAGGATTTAGATTGAATAGAATTATTGGCTTGAGAATGTCTCAAACTAAGATTATGCCATTATCAGGATCAAAATATATTGAATTACCAGATTGGATAAAAAATAAAAAAGCAGTAGTCAATGTTCAAAACAAAGATGAAAAATGTTTTATGTGGTGTATTCTAGCACACTTATATCCAGTTGAAGAACATCCTGAACGAATAAGCAAATATAAAGAGCATGCTTCTAAAATTAATTTCGAAGGTTTCGAATTTCCTTTCCAAGTTAAAGATGTAGATAAGTTTGAGAAGAGAAATAACTTGGCTGTTAATATTGTAACTCATGATGTCTCAGGACCAGCAATAATTGAGTCATATAAAGTATCTAAAAACATCAACGTAGATTTAAGTAGAGTGATAAACCTTTTG</canonical>
            <polymorphic>CAGGAAATATCATCGATTTTAGGTTGATTTATTCAATATTTCTGAAAATTTATTATAGGTTTTAAATGATACTTTTCGTGCTTTATAAATGGAACAAGTTGATTACAAAAAATTGGATAGGGATCAACTACGAAAACTTGTAAGAAACAGAACTAACACAAGTAGAGATGATGTTAGAAATATGAGCGTGCCTGAAATGCGTAAAATACTCAAACAGCTGGATATAGATGAACTTAGCGAAAAGTCAAATCTTCAAATGATGAATCTATTTCCCTTCGATGAAACTGTCTTTAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTGGAAATTCTAAAACATTAGAATCCTTTTTAGATAAGAAAGGGCCTGATATTGTGAAAAAAATTTATGAAAATAGTGTGAAAATATATGTATCCTTAGAATGTGAAATGATAAAAGAAGGTACAGAAGATACCCAAGTAGCTCATTTGACTACAAAAAGTRTATTATTGAATCCAGGTGATAGTAGAATTGACTTCATGAAAAATATTAAATCTGATTTAGTAAATAGATTAGAACATTATCAAAGCAGAGGATCAGGATTTAGATTGAATAGAATTATTGGCTTGAGAATGTCTCAAACTAAGATTATGCCATTATCAGGATCAAAATATATTGAATTACCAGATTGGATAAAAAATAAAAAAGCAGTAGTCAATGTTCAAAACAAAGATGAAAAATGTTTTATGTGGTGTATTCTAGCACACTTATATCCAGTTGAAGAACATCCTGAACGAATAAGCAAATATAAAGAGCATGCTTCTAAAATTAATTTCGAAGGTTTCGAATTTCCTTTCCAAGTTAAAGATGTAGATAAGTTTGAGAAGAGAAATAACTTGGCTGTTAATATTGTAACTCATGATGTCTCAGGACCAGCAATAATTGAGTCATATAAAGTATCTAAAAACATCAACGTAGATTTAAGTAGAGTGATAAACCTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>229 226 106 80 78 57 53 32 25 22 22 18 18 12 10 5 3 2 2</canonical_bands>
                <polymorphic_bands>229 226 106 80 78 75 53 32 25 22 22 18 12 10 5 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGATAAGAAAGGGCCTGATATT</pcr_primer_p1>
		<pcr_primer_p2>ATTCAATCTAAATCCTGATCCTC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TAGATAAGAAAGGGCCTGATATTGTGAAAAAAATTTATGAAAATAGTGTGAAAATATATGTATCCTTAGAATGTGAAATGATAAAAGAAGGTACAGAAGATACCCAAGTAGCTCATTTGACTACAAAAAGTGTATTATTGAATCCAGGTGATAGTAGAATTGACTTCATGAAAAATATTAAATCTGATTTAGTAAATAGATTAGAACATTATCAAAGCAGAGGATCAGGATTTAGATTGAAT</canonical_amplicon>
		<polymorphic_amplicon>TAGATAAGAAAGGGCCTGATATTGTGAAAAAAATTTATGAAAATAGTGTGAAAATATATGTATCCTTAGAATGTGAAATGATAAAAGAAGGTACAGAAGATACCCAAGTAGCTCATTTGACTACAAAAAGTRTATTATTGAATCCAGGTGATAGTAGAATTGACTTCATGAAAAATATTAAATCTGATTTAGTAAATAGATTAGAACATTATCAAAGCAGAGGATCAGGATTTAGATTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34745</snp_id>
        <super_contig>c009401103.Contig1</super_contig>
        <contig_pos>3976</contig_pos>
        <strand></strand>
        <context>TAGAATTATT[G/A]GCTTGAGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAGAACATTATCAAAGCAGAGGATCAGGATTTAGATTGAATAGAATTATT</left_flank>
        <right_flank>GCTTGAGAATGTCTCAAACTAAGATTATGCCATTATCAGGATCAAAATAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATCAACTACGAAAACTTGTAAGAAACAGAACTAACACAAGTAGAGATGATGTTAGAAATATGAGCGTGCCTGAAATGCGTAAAATACTCAAACAGCTGGATATAGATGAACTTAGCGAAAAGTCAAATCTTCAAATGATGAATCTATTTCCCTTCGATGAAACTGTCTTTAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTGGAAATTCTAAAACATTAGAATCCTTTTTAGATAAGAAAGGGCCTGATATTGTGAAAAAAATTTATGAAAATAGTGTGAAAATATATGTATCCTTAGAATGTGAAATGATAAAAGAAGGTACAGAAGATACCCAAGTAGCTCATTTGACTACAAAAAGTGTATTATTGAATCCAGGTGATAGTAGAATTGACTTCATGAAAAATATTAAATCTGATTTAGTAAATAGATTAGAACATTATCAAAGCAGAGGATCAGGATTTAGATTGAATAGAATTATTGGCTTGAGAATGTCTCAAACTAAGATTATGCCATTATCAGGATCAAAATATATTGAATTACCAGATTGGATAAAAAATAAAAAAGCAGTAGTCAATGTTCAAAACAAAGATGAAAAATGTTTTATGTGGTGTATTCTAGCACACTTATATCCAGTTGAAGAACATCCTGAACGAATAAGCAAATATAAAGAGCATGCTTCTAAAATTAATTTCGAAGGTTTCGAATTTCCTTTCCAAGTTAAAGATGTAGATAAGTTTGAGAAGAGAAATAACTTGGCTGTTAATATTGTAACTCATGATGTCTCAGGACCAGCAATAATTGAGTCATATAAAGTATCTAAAAACATCAACGTAGATTTAAGTAGAGTGATAAACCTTTTGTTAGTAACTGATGAATCTGGAGAAGGTCATTACTGTTTGATTAAAAATATTGATAGATTGATGAACACCCAAAATAGTAGAAGCAATAAATTTTGTATTAGATGTCATAATAACTTTTAC</canonical>
            <polymorphic>GGATCAACTACGAAAACTTGTAAGAAACAGAACTAACACAAGTAGAGATGATGTTAGAAATATGAGCGTGCCTGAAATGCGTAAAATACTCAAACAGCTGGATATAGATGAACTTAGCGAAAAGTCAAATCTTCAAATGATGAATCTATTTCCCTTCGATGAAACTGTCTTTAGTGATTACAAAGAAGTTGGTGATACGTTGAGAGATACTTTTCACAGTGGAAATTCTAAAACATTAGAATCCTTTTTAGATAAGAAAGGGCCTGATATTGTGAAAAAAATTTATGAAAATAGTGTGAAAATATATGTATCCTTAGAATGTGAAATGATAAAAGAAGGTACAGAAGATACCCAAGTAGCTCATTTGACTACAAAAAGTGTATTATTGAATCCAGGTGATAGTAGAATTGACTTCATGAAAAATATTAAATCTGATTTAGTAAATAGATTAGAACATTATCAAAGCAGAGGATCAGGATTTAGATTGAATAGAATTATTRGCTTGAGAATGTCTCAAACTAAGATTATGCCATTATCAGGATCAAAATATATTGAATTACCAGATTGGATAAAAAATAAAAAAGCAGTAGTCAATGTTCAAAACAAAGATGAAAAATGTTTTATGTGGTGTATTCTAGCACACTTATATCCAGTTGAAGAACATCCTGAACGAATAAGCAAATATAAAGAGCATGCTTCTAAAATTAATTTCGAAGGTTTCGAATTTCCTTTCCAAGTTAAAGATGTAGATAAGTTTGAGAAGAGAAATAACTTGGCTGTTAATATTGTAACTCATGATGTCTCAGGACCAGCAATAATTGAGTCATATAAAGTATCTAAAAACATCAACGTAGATTTAAGTAGAGTGATAAACCTTTTGTTAGTAACTGATGAATCTGGAGAAGGTCATTACTGTTTGATTAAAAATATTGATAGATTGATGAACACCCAAAATAGTAGAAGCAATAAATTTTGTATTAGATGTCATAATAACTTTTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>275 224 165 142 97 97</canonical_bands>
                <polymorphic_bands>417 224 165 97 97</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAGGTGATAGTAGAATTGACTT</pcr_primer_p1>
		<pcr_primer_p2>TGTGCTAGAATACACCACATAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCAGGTGATAGTAGAATTGACTTCATGAAAAATATTAAATCTGATTTAGTAAATAGATTAGAACATTATCAAAGCAGAGGATCAGGATTTAGATTGAATAGAATTATTGGCTTGAGAATGTCTCAAACTAAGATTATGCCATTATCAGGATCAAAATATATTGAATTACCAGATTGGATAAAAAATAAAAAAGCAGTAGTCAATGTTCAAAACAAAGATGAAAAATGTTTTATGTGGTGTATTCTAGCACA</canonical_amplicon>
		<polymorphic_amplicon>CCAGGTGATAGTAGAATTGACTTCATGAAAAATATTAAATCTGATTTAGTAAATAGATTAGAACATTATCAAAGCAGAGGATCAGGATTTAGATTGAATAGAATTATTRGCTTGAGAATGTCTCAAACTAAGATTATGCCATTATCAGGATCAAAATATATTGAATTACCAGATTGGATAAAAAATAAAAAAGCAGTAGTCAATGTTCAAAACAAAGATGAAAAATGTTTTATGTGGTGTATTCTAGCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34746</snp_id>
        <super_contig>c009401103.Contig1</super_contig>
        <contig_pos>11869</contig_pos>
        <strand>+</strand>
        <context>AAAGTGGTCC[A/G]AAAAGGATTY</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCC</left_flank>
        <right_flank>AAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATACTTAAAAACACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGGAAAAAAAAATTAGTGCCACAGGCGGGTTCCTCGGACCGAAGGTGAAATTTTGGACACACTTCCCAACATTTCCTATCCATGATGCAAAAATCAGAACATGTTTATCTCTTTTCTCAACTGAGTTATTACACGTCAAACAGTGGTGCGCGCTCGTCAAACAGTGCAAAGCCACAGTACATTAAAACTTAAAACGACCGTAACTTGCGTCAAAATGGTTGTAGAGGGATGGTAAAAAAACGAATCGATCAATGAACTCTACATTTTTGTTCCCCTTCATCTATACCCTATCTTTACGTTTAAGACCTCAAAATTGCCAAAAACCTCGAAAAAATGACGTTTTTTGTGTTTGACCGACTGTAGCTCGAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAACCGGTTTTTTCAAAATTTGGGGACTTTCCCACAATTATATGTGTTCACATACTATACTTAAAAAACGCGCAAGCCCAAGGCGGACCTTCAGTAAAAAAATTAGGAAATTCGTATAGAAGGTGTAGCTAAACGGTCAATTTGAAAGTTTAAAATCGACTTTTCGGGGGTCGGGGGGTCCAAAAAAAAAATTTTGTCTTGTTAAAAAAATGCGCCTTCCAAAGACGCATCGAATGGTCAAACTCCGAATTCATAAAATTAATCCGTTCAAAAGTTATATTAAAAAGAAAATTTTGAAATTTTGACTTTGGACCGTCATAGCGACG</canonical>
            <polymorphic>AATACTTAAAAACACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGGAAAAAAAAATTAGTGCCACAGGCGGGTTCCTCGGACCGAAGGTGAAATTTTGGACACACTTCCCAACATTTCCTATCCATGATGCAAAAATCAGAACATGTTTATCTCTTTTCTCAACTGAGTTATTACACGTCAAACAGTGGTGCGCGCTCGTCAAACAGTGCAAAGCCACAGTACATTAAAACTTAAAACGACCGTAACTTGCGTCAAAATGGTTGTAGAGGGATGGTAAAAAAACGAATCGATCAATGAACTCTACATTTTTGTTCCCCTTCATCTATACCCTATCTTTACGTTTAAGACCTCAAAATTGCCAAAAACCTCGAAAAAATGACGTTTTTTGTGTTTGACCGACTGTAGCTCGAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCRAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAACCGGTTTTTTCAAAATTTGGGGACTTTCCCACAATTATATGTGTTCACATACTATACTTAAAAAACGCGCAAGCCCAAGGCGGACCTTCAGTAAAAAAATTAGGAAATTCGTATAGAAGGTGTAGCTAAACGGTCAATTTGAAAGTTTAAAATCGACTTTTCGGGGGTCGGGGGGTCCAAAAAAAAAATTTTGTCTTGTTAAAAAAATGCGCCTTCCAAAGACGCATCGAATGGTCAAACTCCGAATTCATAAAATTAATCCGTTCAAAAGTTATATTAAAAAGAAAATTTTGAAATTTTGACTTTGGACCGTCATAGCGACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>349 272 149 90 80 60</canonical_bands>
                <polymorphic_bands>498 272 90 80 60</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAACGAACCGTTTAACAT</pcr_primer_p1>
		<pcr_primer_p2>CATATCTCGTTAACGGTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATG</canonical_amplicon>
		<polymorphic_amplicon>GAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCRAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34747</snp_id>
        <super_contig>c009401103.Contig1</super_contig>
        <contig_pos>11879</contig_pos>
        <strand>+</strand>
        <context>RAAAAGGATT[C/T]WAYWGACAGR</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATT</left_flank>
        <right_flank>TATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGGAAAAAAAAATTAGTGCCACAGGCGGGTTCCTCGGACCGAAGGTGAAATTTTGGACACACTTCCCAACATTTCCTATCCATGATGCAAAAATCAGAACATGTTTATCTCTTTTCTCAACTGAGTTATTACACGTCAAACAGTGGTGCGCGCTCGTCAAACAGTGCAAAGCCACAGTACATTAAAACTTAAAACGACCGTAACTTGCGTCAAAATGGTTGTAGAGGGATGGTAAAAAAACGAATCGATCAATGAACTCTACATTTTTGTTCCCCTTCATCTATACCCTATCTTTACGTTTAAGACCTCAAAATTGCCAAAAACCTCGAAAAAATGACGTTTTTTGTGTTTGACCGACTGTAGCTCGAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAACCGGTTTTTTCAAAATTTGGGGACTTTCCCACAATTATATGTGTTCACATACTATACTTAAAAAACGCGCAAGCCCAAGGCGGACCTTCAGTAAAAAAATTAGGAAATTCGTATAGAAGGTGTAGCTAAACGGTCAATTTGAAAGTTTAAAATCGACTTTTCGGGGGTCGGGGGGTCCAAAAAAAAAATTTTGTCTTGTTAAAAAAATGCGCCTTCCAAAGACGCATCGAATGGTCAAACTCCGAATTCATAAAATTAATCCGTTCAAAAGTTATATTAAAAAGAAAATTTTGAAATTTTGACTTTGGACCGTCATAGCGACGGTGCCCTTAG</canonical>
            <polymorphic>AACACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGGAAAAAAAAATTAGTGCCACAGGCGGGTTCCTCGGACCGAAGGTGAAATTTTGGACACACTTCCCAACATTTCCTATCCATGATGCAAAAATCAGAACATGTTTATCTCTTTTCTCAACTGAGTTATTACACGTCAAACAGTGGTGCGCGCTCGTCAAACAGTGCAAAGCCACAGTACATTAAAACTTAAAACGACCGTAACTTGCGTCAAAATGGTTGTAGAGGGATGGTAAAAAAACGAATCGATCAATGAACTCTACATTTTTGTTCCCCTTCATCTATACCCTATCTTTACGTTTAAGACCTCAAAATTGCCAAAAACCTCGAAAAAATGACGTTTTTTGTGTTTGACCGACTGTAGCTCGAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTYTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAACCGGTTTTTTCAAAATTTGGGGACTTTCCCACAATTATATGTGTTCACATACTATACTTAAAAAACGCGCAAGCCCAAGGCGGACCTTCAGTAAAAAAATTAGGAAATTCGTATAGAAGGTGTAGCTAAACGGTCAATTTGAAAGTTTAAAATCGACTTTTCGGGGGTCGGGGGGTCCAAAAAAAAAATTTTGTCTTGTTAAAAAAATGCGCCTTCCAAAGACGCATCGAATGGTCAAACTCCGAATTCATAAAATTAATCCGTTCAAAAGTTATATTAAAAAGAAAATTTTGAAATTTTGACTTTGGACCGTCATAGCGACGGTGCCCTTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 375 98 27</canonical_bands>
                <polymorphic_bands>598 375 27</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>504 286 210</canonical_bands>
                <polymorphic_bands>714 286</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>504 286 210</canonical_bands>
                <polymorphic_bands>714 286</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAACGAACCGTTTAACAT</pcr_primer_p1>
		<pcr_primer_p2>CATATCTCGTTAACGGTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATG</canonical_amplicon>
		<polymorphic_amplicon>GAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTYTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34748</snp_id>
        <super_contig>c009401103.Contig1</super_contig>
        <contig_pos>11880</contig_pos>
        <strand>+</strand>
        <context>AAAAGGATTY[A/T]AYWGACAGRT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTC</left_flank>
        <right_flank>ATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGGAAAAAAAAATTAGTGCCACAGGCGGGTTCCTCGGACCGAAGGTGAAATTTTGGACACACTTCCCAACATTTCCTATCCATGATGCAAAAATCAGAACATGTTTATCTCTTTTCTCAACTGAGTTATTACACGTCAAACAGTGGTGCGCGCTCGTCAAACAGTGCAAAGCCACAGTACATTAAAACTTAAAACGACCGTAACTTGCGTCAAAATGGTTGTAGAGGGATGGTAAAAAAACGAATCGATCAATGAACTCTACATTTTTGTTCCCCTTCATCTATACCCTATCTTTACGTTTAAGACCTCAAAATTGCCAAAAACCTCGAAAAAATGACGTTTTTTGTGTTTGACCGACTGTAGCTCGAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAACCGGTTTTTTCAAAATTTGGGGACTTTCCCACAATTATATGTGTTCACATACTATACTTAAAAAACGCGCAAGCCCAAGGCGGACCTTCAGTAAAAAAATTAGGAAATTCGTATAGAAGGTGTAGCTAAACGGTCAATTTGAAAGTTTAAAATCGACTTTTCGGGGGTCGGGGGGTCCAAAAAAAAAATTTTGTCTTGTTAAAAAAATGCGCCTTCCAAAGACGCATCGAATGGTCAAACTCCGAATTCATAAAATTAATCCGTTCAAAAGTTATATTAAAAAGAAAATTTTGAAATTTTGACTTTGGACCGTCATAGCGACGGTGCCCTTAGG</canonical>
            <polymorphic>ACACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGGAAAAAAAAATTAGTGCCACAGGCGGGTTCCTCGGACCGAAGGTGAAATTTTGGACACACTTCCCAACATTTCCTATCCATGATGCAAAAATCAGAACATGTTTATCTCTTTTCTCAACTGAGTTATTACACGTCAAACAGTGGTGCGCGCTCGTCAAACAGTGCAAAGCCACAGTACATTAAAACTTAAAACGACCGTAACTTGCGTCAAAATGGTTGTAGAGGGATGGTAAAAAAACGAATCGATCAATGAACTCTACATTTTTGTTCCCCTTCATCTATACCCTATCTTTACGTTTAAGACCTCAAAATTGCCAAAAACCTCGAAAAAATGACGTTTTTTGTGTTTGACCGACTGTAGCTCGAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCWATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAACCGGTTTTTTCAAAATTTGGGGACTTTCCCACAATTATATGTGTTCACATACTATACTTAAAAAACGCGCAAGCCCAAGGCGGACCTTCAGTAAAAAAATTAGGAAATTCGTATAGAAGGTGTAGCTAAACGGTCAATTTGAAAGTTTAAAATCGACTTTTCGGGGGTCGGGGGGTCCAAAAAAAAAATTTTGTCTTGTTAAAAAAATGCGCCTTCCAAAGACGCATCGAATGGTCAAACTCCGAATTCATAAAATTAATCCGTTCAAAAGTTATATTAAAAAGAAAATTTTGAAATTTTGACTTTGGACCGTCATAGCGACGGTGCCCTTAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 375 98 26</canonical_bands>
                <polymorphic_bands>599 375 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAACGAACCGTTTAACAT</pcr_primer_p1>
		<pcr_primer_p2>CATATCTCGTTAACGGTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATG</canonical_amplicon>
		<polymorphic_amplicon>GAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCWATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34749</snp_id>
        <super_contig>c009401103.Contig1</super_contig>
        <contig_pos>11882</contig_pos>
        <strand>+</strand>
        <context>AAGGATTYWA[C/T]WGACAGRTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTA</left_flank>
        <right_flank>AGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGGAAAAAAAAATTAGTGCCACAGGCGGGTTCCTCGGACCGAAGGTGAAATTTTGGACACACTTCCCAACATTTCCTATCCATGATGCAAAAATCAGAACATGTTTATCTCTTTTCTCAACTGAGTTATTACACGTCAAACAGTGGTGCGCGCTCGTCAAACAGTGCAAAGCCACAGTACATTAAAACTTAAAACGACCGTAACTTGCGTCAAAATGGTTGTAGAGGGATGGTAAAAAAACGAATCGATCAATGAACTCTACATTTTTGTTCCCCTTCATCTATACCCTATCTTTACGTTTAAGACCTCAAAATTGCCAAAAACCTCGAAAAAATGACGTTTTTTGTGTTTGACCGACTGTAGCTCGAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAACCGGTTTTTTCAAAATTTGGGGACTTTCCCACAATTATATGTGTTCACATACTATACTTAAAAAACGCGCAAGCCCAAGGCGGACCTTCAGTAAAAAAATTAGGAAATTCGTATAGAAGGTGTAGCTAAACGGTCAATTTGAAAGTTTAAAATCGACTTTTCGGGGGTCGGGGGGTCCAAAAAAAAAATTTTGTCTTGTTAAAAAAATGCGCCTTCCAAAGACGCATCGAATGGTCAAACTCCGAATTCATAAAATTAATCCGTTCAAAAGTTATATTAAAAAGAAAATTTTGAAATTTTGACTTTGGACCGTCATAGCGACGGTGCCCTTAGGTG</canonical>
            <polymorphic>ACTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGGAAAAAAAAATTAGTGCCACAGGCGGGTTCCTCGGACCGAAGGTGAAATTTTGGACACACTTCCCAACATTTCCTATCCATGATGCAAAAATCAGAACATGTTTATCTCTTTTCTCAACTGAGTTATTACACGTCAAACAGTGGTGCGCGCTCGTCAAACAGTGCAAAGCCACAGTACATTAAAACTTAAAACGACCGTAACTTGCGTCAAAATGGTTGTAGAGGGATGGTAAAAAAACGAATCGATCAATGAACTCTACATTTTTGTTCCCCTTCATCTATACCCTATCTTTACGTTTAAGACCTCAAAATTGCCAAAAACCTCGAAAAAATGACGTTTTTTGTGTTTGACCGACTGTAGCTCGAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTAYAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAACCGGTTTTTTCAAAATTTGGGGACTTTCCCACAATTATATGTGTTCACATACTATACTTAAAAAACGCGCAAGCCCAAGGCGGACCTTCAGTAAAAAAATTAGGAAATTCGTATAGAAGGTGTAGCTAAACGGTCAATTTGAAAGTTTAAAATCGACTTTTCGGGGGTCGGGGGGTCCAAAAAAAAAATTTTGTCTTGTTAAAAAAATGCGCCTTCCAAAGACGCATCGAATGGTCAAACTCCGAATTCATAAAATTAATCCGTTCAAAAGTTATATTAAAAAGAAAATTTTGAAATTTTGACTTTGGACCGTCATAGCGACGGTGCCCTTAGGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 375 98 24</canonical_bands>
                <polymorphic_bands>601 375 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAACGAACCGTTTAACAT</pcr_primer_p1>
		<pcr_primer_p2>CATATCTCGTTAACGGTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATG</canonical_amplicon>
		<polymorphic_amplicon>GAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTAYAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34750</snp_id>
        <super_contig>c009401103.Contig1</super_contig>
        <contig_pos>11883</contig_pos>
        <strand>+</strand>
        <context>AGGATTYWAY[A/T]GACAGRTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTAT</left_flank>
        <right_flank>GACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGGAAAAAAAAATTAGTGCCACAGGCGGGTTCCTCGGACCGAAGGTGAAATTTTGGACACACTTCCCAACATTTCCTATCCATGATGCAAAAATCAGAACATGTTTATCTCTTTTCTCAACTGAGTTATTACACGTCAAACAGTGGTGCGCGCTCGTCAAACAGTGCAAAGCCACAGTACATTAAAACTTAAAACGACCGTAACTTGCGTCAAAATGGTTGTAGAGGGATGGTAAAAAAACGAATCGATCAATGAACTCTACATTTTTGTTCCCCTTCATCTATACCCTATCTTTACGTTTAAGACCTCAAAATTGCCAAAAACCTCGAAAAAATGACGTTTTTTGTGTTTGACCGACTGTAGCTCGAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAACCGGTTTTTTCAAAATTTGGGGACTTTCCCACAATTATATGTGTTCACATACTATACTTAAAAAACGCGCAAGCCCAAGGCGGACCTTCAGTAAAAAAATTAGGAAATTCGTATAGAAGGTGTAGCTAAACGGTCAATTTGAAAGTTTAAAATCGACTTTTCGGGGGTCGGGGGGTCCAAAAAAAAAATTTTGTCTTGTTAAAAAAATGCGCCTTCCAAAGACGCATCGAATGGTCAAACTCCGAATTCATAAAATTAATCCGTTCAAAAGTTATATTAAAAAGAAAATTTTGAAATTTTGACTTTGGACCGTCATAGCGACGGTGCCCTTAGGTGA</canonical>
            <polymorphic>CTTAATTTACACTCAGGGACCCCTACAGTACTCGAAAAAATGGAAAAAAAAATTAGTGCCACAGGCGGGTTCCTCGGACCGAAGGTGAAATTTTGGACACACTTCCCAACATTTCCTATCCATGATGCAAAAATCAGAACATGTTTATCTCTTTTCTCAACTGAGTTATTACACGTCAAACAGTGGTGCGCGCTCGTCAAACAGTGCAAAGCCACAGTACATTAAAACTTAAAACGACCGTAACTTGCGTCAAAATGGTTGTAGAGGGATGGTAAAAAAACGAATCGATCAATGAACTCTACATTTTTGTTCCCCTTCATCTATACCCTATCTTTACGTTTAAGACCTCAAAATTGCCAAAAACCTCGAAAAAATGACGTTTTTTGTGTTTGACCGACTGTAGCTCGAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATWGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAACCGGTTTTTTCAAAATTTGGGGACTTTCCCACAATTATATGTGTTCACATACTATACTTAAAAAACGCGCAAGCCCAAGGCGGACCTTCAGTAAAAAAATTAGGAAATTCGTATAGAAGGTGTAGCTAAACGGTCAATTTGAAAGTTTAAAATCGACTTTTCGGGGGTCGGGGGGTCCAAAAAAAAAATTTTGTCTTGTTAAAAAAATGCGCCTTCCAAAGACGCATCGAATGGTCAAACTCCGAATTCATAAAATTAATCCGTTCAAAAGTTATATTAAAAAGAAAATTTTGAAATTTTGACTTTGGACCGTCATAGCGACGGTGCCCTTAGGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 375 98 23</canonical_bands>
                <polymorphic_bands>602 375 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAACGAACCGTTTAACAT</pcr_primer_p1>
		<pcr_primer_p2>CATATCTCGTTAACGGTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATG</canonical_amplicon>
		<polymorphic_amplicon>GAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATWGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34751</snp_id>
        <super_contig>c009401103.Contig1</super_contig>
        <contig_pos>11889</contig_pos>
        <strand>+</strand>
        <context>YWAYWGACAG[A/G]TTTTTAGCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAG</left_flank>
        <right_flank>TTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACACTCAGGGACCCCTACAGTACTCGAAAAAATGGAAAAAAAAATTAGTGCCACAGGCGGGTTCCTCGGACCGAAGGTGAAATTTTGGACACACTTCCCAACATTTCCTATCCATGATGCAAAAATCAGAACATGTTTATCTCTTTTCTCAACTGAGTTATTACACGTCAAACAGTGGTGCGCGCTCGTCAAACAGTGCAAAGCCACAGTACATTAAAACTTAAAACGACCGTAACTTGCGTCAAAATGGTTGTAGAGGGATGGTAAAAAAACGAATCGATCAATGAACTCTACATTTTTGTTCCCCTTCATCTATACCCTATCTTTACGTTTAAGACCTCAAAATTGCCAAAAACCTCGAAAAAATGACGTTTTTTGTGTTTGACCGACTGTAGCTCGAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAACCGGTTTTTTCAAAATTTGGGGACTTTCCCACAATTATATGTGTTCACATACTATACTTAAAAAACGCGCAAGCCCAAGGCGGACCTTCAGTAAAAAAATTAGGAAATTCGTATAGAAGGTGTAGCTAAACGGTCAATTTGAAAGTTTAAAATCGACTTTTCGGGGGTCGGGGGGTCCAAAAAAAAAATTTTGTCTTGTTAAAAAAATGCGCCTTCCAAAGACGCATCGAATGGTCAAACTCCGAATTCATAAAATTAATCCGTTCAAAAGTTATATTAAAAAGAAAATTTTGAAATTTTGACTTTGGACCGTCATAGCGACGGTGCCCTTAGGTGAAAAACT</canonical>
            <polymorphic>TTACACTCAGGGACCCCTACAGTACTCGAAAAAATGGAAAAAAAAATTAGTGCCACAGGCGGGTTCCTCGGACCGAAGGTGAAATTTTGGACACACTTCCCAACATTTCCTATCCATGATGCAAAAATCAGAACATGTTTATCTCTTTTCTCAACTGAGTTATTACACGTCAAACAGTGGTGCGCGCTCGTCAAACAGTGCAAAGCCACAGTACATTAAAACTTAAAACGACCGTAACTTGCGTCAAAATGGTTGTAGAGGGATGGTAAAAAAACGAATCGATCAATGAACTCTACATTTTTGTTCCCCTTCATCTATACCCTATCTTTACGTTTAAGACCTCAAAATTGCCAAAAACCTCGAAAAAATGACGTTTTTTGTGTTTGACCGACTGTAGCTCGAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGRTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAACCGGTTTTTTCAAAATTTGGGGACTTTCCCACAATTATATGTGTTCACATACTATACTTAAAAAACGCGCAAGCCCAAGGCGGACCTTCAGTAAAAAAATTAGGAAATTCGTATAGAAGGTGTAGCTAAACGGTCAATTTGAAAGTTTAAAATCGACTTTTCGGGGGTCGGGGGGTCCAAAAAAAAAATTTTGTCTTGTTAAAAAAATGCGCCTTCCAAAGACGCATCGAATGGTCAAACTCCGAATTCATAAAATTAATCCGTTCAAAAGTTATATTAAAAAGAAAATTTTGAAATTTTGACTTTGGACCGTCATAGCGACGGTGCCCTTAGGTGAAAAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>179 160 157 155 134 87 23 21 21 20 18 13 12</canonical_bands>
                <polymorphic_bands>221 179 160 157 155 23 21 21 20 18 13 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAACGAACCGTTTAACAT</pcr_primer_p1>
		<pcr_primer_p2>CATATCTCGTTAACGGTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATG</canonical_amplicon>
		<polymorphic_amplicon>GAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGRTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34752</snp_id>
        <super_contig>c009401103.Contig1</super_contig>
        <contig_pos>11900</contig_pos>
        <strand>+</strand>
        <context>TTTTTAGCAG[A/G]TTTTTTCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAG</left_flank>
        <right_flank>TTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACCCCTACAGTACTCGAAAAAATGGAAAAAAAAATTAGTGCCACAGGCGGGTTCCTCGGACCGAAGGTGAAATTTTGGACACACTTCCCAACATTTCCTATCCATGATGCAAAAATCAGAACATGTTTATCTCTTTTCTCAACTGAGTTATTACACGTCAAACAGTGGTGCGCGCTCGTCAAACAGTGCAAAGCCACAGTACATTAAAACTTAAAACGACCGTAACTTGCGTCAAAATGGTTGTAGAGGGATGGTAAAAAAACGAATCGATCAATGAACTCTACATTTTTGTTCCCCTTCATCTATACCCTATCTTTACGTTTAAGACCTCAAAATTGCCAAAAACCTCGAAAAAATGACGTTTTTTGTGTTTGACCGACTGTAGCTCGAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAACCGGTTTTTTCAAAATTTGGGGACTTTCCCACAATTATATGTGTTCACATACTATACTTAAAAAACGCGCAAGCCCAAGGCGGACCTTCAGTAAAAAAATTAGGAAATTCGTATAGAAGGTGTAGCTAAACGGTCAATTTGAAAGTTTAAAATCGACTTTTCGGGGGTCGGGGGGTCCAAAAAAAAAATTTTGTCTTGTTAAAAAAATGCGCCTTCCAAAGACGCATCGAATGGTCAAACTCCGAATTCATAAAATTAATCCGTTCAAAAGTTATATTAAAAAGAAAATTTTGAAATTTTGACTTTGGACCGTCATAGCGACGGTGCCCTTAGGTGAAAAACTAAGGATAGTAT</canonical>
            <polymorphic>GACCCCTACAGTACTCGAAAAAATGGAAAAAAAAATTAGTGCCACAGGCGGGTTCCTCGGACCGAAGGTGAAATTTTGGACACACTTCCCAACATTTCCTATCCATGATGCAAAAATCAGAACATGTTTATCTCTTTTCTCAACTGAGTTATTACACGTCAAACAGTGGTGCGCGCTCGTCAAACAGTGCAAAGCCACAGTACATTAAAACTTAAAACGACCGTAACTTGCGTCAAAATGGTTGTAGAGGGATGGTAAAAAAACGAATCGATCAATGAACTCTACATTTTTGTTCCCCTTCATCTATACCCTATCTTTACGTTTAAGACCTCAAAATTGCCAAAAACCTCGAAAAAATGACGTTTTTTGTGTTTGACCGACTGTAGCTCGAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGRTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAACCGGTTTTTTCAAAATTTGGGGACTTTCCCACAATTATATGTGTTCACATACTATACTTAAAAAACGCGCAAGCCCAAGGCGGACCTTCAGTAAAAAAATTAGGAAATTCGTATAGAAGGTGTAGCTAAACGGTCAATTTGAAAGTTTAAAATCGACTTTTCGGGGGTCGGGGGGTCCAAAAAAAAAATTTTGTCTTGTTAAAAAAATGCGCCTTCCAAAGACGCATCGAATGGTCAAACTCCGAATTCATAAAATTAATCCGTTCAAAAGTTATATTAAAAAGAAAATTTTGAAATTTTGACTTTGGACCGTCATAGCGACGGTGCCCTTAGGTGAAAAACTAAGGATAGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAACGAACCGTTTAACAT</pcr_primer_p1>
		<pcr_primer_p2>CATATCTCGTTAACGGTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATG</canonical_amplicon>
		<polymorphic_amplicon>GAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGRTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34753</snp_id>
        <super_contig>c009401103.Contig1</super_contig>
        <contig_pos>11946</contig_pos>
        <strand>+</strand>
        <context>CAAAAGTGAA[A/T]AYTTTTTTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAA</left_flank>
        <right_flank>ATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCGGGTTCCTCGGACCGAAGGTGAAATTTTGGACACACTTCCCAACATTTCCTATCCATGATGCAAAAATCAGAACATGTTTATCTCTTTTCTCAACTGAGTTATTACACGTCAAACAGTGGTGCGCGCTCGTCAAACAGTGCAAAGCCACAGTACATTAAAACTTAAAACGACCGTAACTTGCGTCAAAATGGTTGTAGAGGGATGGTAAAAAAACGAATCGATCAATGAACTCTACATTTTTGTTCCCCTTCATCTATACCCTATCTTTACGTTTAAGACCTCAAAATTGCCAAAAACCTCGAAAAAATGACGTTTTTTGTGTTTGACCGACTGTAGCTCGAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAACCGGTTTTTTCAAAATTTGGGGACTTTCCCACAATTATATGTGTTCACATACTATACTTAAAAAACGCGCAAGCCCAAGGCGGACCTTCAGTAAAAAAATTAGGAAATTCGTATAGAAGGTGTAGCTAAACGGTCAATTTGAAAGTTTAAAATCGACTTTTCGGGGGTCGGGGGGTCCAAAAAAAAAATTTTGTCTTGTTAAAAAAATGCGCCTTCCAAAGACGCATCGAATGGTCAAACTCCGAATTCATAAAATTAATCCGTTCAAAAGTTATATTAAAAAGAAAATTTTGAAATTTTGACTTTGGACCGTCATAGCGACGGTGCCCTTAGGTGAAAAACTAAGGATAGTATGTCCCTTTTTTTCGATGCTCTATCCAATGGTGAAAAAAAAACTTGA</canonical>
            <polymorphic>GGCGGGTTCCTCGGACCGAAGGTGAAATTTTGGACACACTTCCCAACATTTCCTATCCATGATGCAAAAATCAGAACATGTTTATCTCTTTTCTCAACTGAGTTATTACACGTCAAACAGTGGTGCGCGCTCGTCAAACAGTGCAAAGCCACAGTACATTAAAACTTAAAACGACCGTAACTTGCGTCAAAATGGTTGTAGAGGGATGGTAAAAAAACGAATCGATCAATGAACTCTACATTTTTGTTCCCCTTCATCTATACCCTATCTTTACGTTTAAGACCTCAAAATTGCCAAAAACCTCGAAAAAATGACGTTTTTTGTGTTTGACCGACTGTAGCTCGAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAWATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAACCGGTTTTTTCAAAATTTGGGGACTTTCCCACAATTATATGTGTTCACATACTATACTTAAAAAACGCGCAAGCCCAAGGCGGACCTTCAGTAAAAAAATTAGGAAATTCGTATAGAAGGTGTAGCTAAACGGTCAATTTGAAAGTTTAAAATCGACTTTTCGGGGGTCGGGGGGTCCAAAAAAAAAATTTTGTCTTGTTAAAAAAATGCGCCTTCCAAAGACGCATCGAATGGTCAAACTCCGAATTCATAAAATTAATCCGTTCAAAAGTTATATTAAAAAGAAAATTTTGAAATTTTGACTTTGGACCGTCATAGCGACGGTGCCCTTAGGTGAAAAACTAAGGATAGTATGTCCCTTTTTTTCGATGCTCTATCCAATGGTGAAAAAAAAACTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>474 114 106 92 81 58 42 25 8</canonical_bands>
                <polymorphic_bands>588 106 92 81 58 42 25 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>263 114 108 106 103 65 58 51 33 30 25 19 9 8 8</canonical_bands>
                <polymorphic_bands>263 217 108 106 65 58 51 33 30 25 19 9 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAACGAACCGTTTAACAT</pcr_primer_p1>
		<pcr_primer_p2>CATATCTCGTTAACGGTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATG</canonical_amplicon>
		<polymorphic_amplicon>GAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAWATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34754</snp_id>
        <super_contig>c009401103.Contig1</super_contig>
        <contig_pos>11948</contig_pos>
        <strand>+</strand>
        <context>AAAGTGAAWA[C/T]TTTTTTTGCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAA</left_flank>
        <right_flank>TTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGGTTCCTCGGACCGAAGGTGAAATTTTGGACACACTTCCCAACATTTCCTATCCATGATGCAAAAATCAGAACATGTTTATCTCTTTTCTCAACTGAGTTATTACACGTCAAACAGTGGTGCGCGCTCGTCAAACAGTGCAAAGCCACAGTACATTAAAACTTAAAACGACCGTAACTTGCGTCAAAATGGTTGTAGAGGGATGGTAAAAAAACGAATCGATCAATGAACTCTACATTTTTGTTCCCCTTCATCTATACCCTATCTTTACGTTTAAGACCTCAAAATTGCCAAAAACCTCGAAAAAATGACGTTTTTTGTGTTTGACCGACTGTAGCTCGAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAACCGGTTTTTTCAAAATTTGGGGACTTTCCCACAATTATATGTGTTCACATACTATACTTAAAAAACGCGCAAGCCCAAGGCGGACCTTCAGTAAAAAAATTAGGAAATTCGTATAGAAGGTGTAGCTAAACGGTCAATTTGAAAGTTTAAAATCGACTTTTCGGGGGTCGGGGGGTCCAAAAAAAAAATTTTGTCTTGTTAAAAAAATGCGCCTTCCAAAGACGCATCGAATGGTCAAACTCCGAATTCATAAAATTAATCCGTTCAAAAGTTATATTAAAAAGAAAATTTTGAAATTTTGACTTTGGACCGTCATAGCGACGGTGCCCTTAGGTGAAAAACTAAGGATAGTATGTCCCTTTTTTTCGATGCTCTATCCAATGGTGAAAAAAAAACTTGAAA</canonical>
            <polymorphic>CGGGTTCCTCGGACCGAAGGTGAAATTTTGGACACACTTCCCAACATTTCCTATCCATGATGCAAAAATCAGAACATGTTTATCTCTTTTCTCAACTGAGTTATTACACGTCAAACAGTGGTGCGCGCTCGTCAAACAGTGCAAAGCCACAGTACATTAAAACTTAAAACGACCGTAACTTGCGTCAAAATGGTTGTAGAGGGATGGTAAAAAAACGAATCGATCAATGAACTCTACATTTTTGTTCCCCTTCATCTATACCCTATCTTTACGTTTAAGACCTCAAAATTGCCAAAAACCTCGAAAAAATGACGTTTTTTGTGTTTGACCGACTGTAGCTCGAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAAYTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAACCGGTTTTTTCAAAATTTGGGGACTTTCCCACAATTATATGTGTTCACATACTATACTTAAAAAACGCGCAAGCCCAAGGCGGACCTTCAGTAAAAAAATTAGGAAATTCGTATAGAAGGTGTAGCTAAACGGTCAATTTGAAAGTTTAAAATCGACTTTTCGGGGGTCGGGGGGTCCAAAAAAAAAATTTTGTCTTGTTAAAAAAATGCGCCTTCCAAAGACGCATCGAATGGTCAAACTCCGAATTCATAAAATTAATCCGTTCAAAAGTTATATTAAAAAGAAAATTTTGAAATTTTGACTTTGGACCGTCATAGCGACGGTGCCCTTAGGTGAAAAACTAAGGATAGTATGTCCCTTTTTTTCGATGCTCTATCCAATGGTGAAAAAAAAACTTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>474 114 108 92 81 58 42 23 8</canonical_bands>
                <polymorphic_bands>588 108 92 81 58 42 23 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>263 114 108 108 103 65 58 51 33 30 23 19 9 8 8</canonical_bands>
                <polymorphic_bands>263 217 108 108 65 58 51 33 30 23 19 9 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAACGAACCGTTTAACAT</pcr_primer_p1>
		<pcr_primer_p2>CATATCTCGTTAACGGTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATG</canonical_amplicon>
		<polymorphic_amplicon>GAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAAYTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34755</snp_id>
        <super_contig>c009401103.Contig1</super_contig>
        <contig_pos>11996</contig_pos>
        <strand>+</strand>
        <context>AACTTTCCTT[C/T]TGTCGGTACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTT</left_flank>
        <right_flank>TGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTATCCATGATGCAAAAATCAGAACATGTTTATCTCTTTTCTCAACTGAGTTATTACACGTCAAACAGTGGTGCGCGCTCGTCAAACAGTGCAAAGCCACAGTACATTAAAACTTAAAACGACCGTAACTTGCGTCAAAATGGTTGTAGAGGGATGGTAAAAAAACGAATCGATCAATGAACTCTACATTTTTGTTCCCCTTCATCTATACCCTATCTTTACGTTTAAGACCTCAAAATTGCCAAAAACCTCGAAAAAATGACGTTTTTTGTGTTTGACCGACTGTAGCTCGAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAACCGGTTTTTTCAAAATTTGGGGACTTTCCCACAATTATATGTGTTCACATACTATACTTAAAAAACGCGCAAGCCCAAGGCGGACCTTCAGTAAAAAAATTAGGAAATTCGTATAGAAGGTGTAGCTAAACGGTCAATTTGAAAGTTTAAAATCGACTTTTCGGGGGTCGGGGGGTCCAAAAAAAAAATTTTGTCTTGTTAAAAAAATGCGCCTTCCAAAGACGCATCGAATGGTCAAACTCCGAATTCATAAAATTAATCCGTTCAAAAGTTATATTAAAAAGAAAATTTTGAAATTTTGACTTTGGACCGTCATAGCGACGGTGCCCTTAGGTGAAAAACTAAGGATAGTATGTCCCTTTTTTTCGATGCTCTATCCAATGGTGAAAAAAAAACTTGAAAATTCCAATTTCACCCCTCCGACCTCAGCCCAAATAGCGCAGGCTACGC</canonical>
            <polymorphic>TCCTATCCATGATGCAAAAATCAGAACATGTTTATCTCTTTTCTCAACTGAGTTATTACACGTCAAACAGTGGTGCGCGCTCGTCAAACAGTGCAAAGCCACAGTACATTAAAACTTAAAACGACCGTAACTTGCGTCAAAATGGTTGTAGAGGGATGGTAAAAAAACGAATCGATCAATGAACTCTACATTTTTGTTCCCCTTCATCTATACCCTATCTTTACGTTTAAGACCTCAAAATTGCCAAAAACCTCGAAAAAATGACGTTTTTTGTGTTTGACCGACTGTAGCTCGAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTYTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAACCGGTTTTTTCAAAATTTGGGGACTTTCCCACAATTATATGTGTTCACATACTATACTTAAAAAACGCGCAAGCCCAAGGCGGACCTTCAGTAAAAAAATTAGGAAATTCGTATAGAAGGTGTAGCTAAACGGTCAATTTGAAAGTTTAAAATCGACTTTTCGGGGGTCGGGGGGTCCAAAAAAAAAATTTTGTCTTGTTAAAAAAATGCGCCTTCCAAAGACGCATCGAATGGTCAAACTCCGAATTCATAAAATTAATCCGTTCAAAAGTTATATTAAAAAGAAAATTTTGAAATTTTGACTTTGGACCGTCATAGCGACGGTGCCCTTAGGTGAAAAACTAAGGATAGTATGTCCCTTTTTTTCGATGCTCTATCCAATGGTGAAAAAAAAACTTGAAAATTCCAATTTCACCCCTCCGACCTCAGCCCAAATAGCGCAGGCTACGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCTTAAATCGAGCTATTTTTC</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTGGGGTCCATATCTC</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>AACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>AACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTYTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34756</snp_id>
        <super_contig>c009401103.Contig1</super_contig>
        <contig_pos>12049</contig_pos>
        <strand>+</strand>
        <context>CCCAAAAACC[A/G]STTTTTTCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAACC</left_flank>
        <right_flank>GTTTTTTCAAAATTTGGGGACTTTCCCACAATTATATGTGTTCACATACT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTACACGTCAAACAGTGGTGCGCGCTCGTCAAACAGTGCAAAGCCACAGTACATTAAAACTTAAAACGACCGTAACTTGCGTCAAAATGGTTGTAGAGGGATGGTAAAAAAACGAATCGATCAATGAACTCTACATTTTTGTTCCCCTTCATCTATACCCTATCTTTACGTTTAAGACCTCAAAATTGCCAAAAACCTCGAAAAAATGACGTTTTTTGTGTTTGACCGACTGTAGCTCGAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAACCGGTTTTTTCAAAATTTGGGGACTTTCCCACAATTATATGTGTTCACATACTATACTTAAAAAACGCGCAAGCCCAAGGCGGACCTTCAGTAAAAAAATTAGGAAATTCGTATAGAAGGTGTAGCTAAACGGTCAATTTGAAAGTTTAAAATCGACTTTTCGGGGGTCGGGGGGTCCAAAAAAAAAATTTTGTCTTGTTAAAAAAATGCGCCTTCCAAAGACGCATCGAATGGTCAAACTCCGAATTCATAAAATTAATCCGTTCAAAAGTTATATTAAAAAGAAAATTTTGAAATTTTGACTTTGGACCGTCATAGCGACGGTGCCCTTAGGTGAAAAACTAAGGATAGTATGTCCCTTTTTTTCGATGCTCTATCCAATGGTGAAAAAAAAACTTGAAAATTCCAATTTCACCCCTCCGACCTCAGCCCAAATAGCGCAGGCTACGCCTGCGCCTGAGCCTAAGCGTAGCTGTTTTTTTTTCCAAAAAAAAATTCCAGAC</canonical>
            <polymorphic>TATTACACGTCAAACAGTGGTGCGCGCTCGTCAAACAGTGCAAAGCCACAGTACATTAAAACTTAAAACGACCGTAACTTGCGTCAAAATGGTTGTAGAGGGATGGTAAAAAAACGAATCGATCAATGAACTCTACATTTTTGTTCCCCTTCATCTATACCCTATCTTTACGTTTAAGACCTCAAAATTGCCAAAAACCTCGAAAAAATGACGTTTTTTGTGTTTGACCGACTGTAGCTCGAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAACCRGTTTTTTCAAAATTTGGGGACTTTCCCACAATTATATGTGTTCACATACTATACTTAAAAAACGCGCAAGCCCAAGGCGGACCTTCAGTAAAAAAATTAGGAAATTCGTATAGAAGGTGTAGCTAAACGGTCAATTTGAAAGTTTAAAATCGACTTTTCGGGGGTCGGGGGGTCCAAAAAAAAAATTTTGTCTTGTTAAAAAAATGCGCCTTCCAAAGACGCATCGAATGGTCAAACTCCGAATTCATAAAATTAATCCGTTCAAAAGTTATATTAAAAAGAAAATTTTGAAATTTTGACTTTGGACCGTCATAGCGACGGTGCCCTTAGGTGAAAAACTAAGGATAGTATGTCCCTTTTTTTCGATGCTCTATCCAATGGTGAAAAAAAAACTTGAAAATTCCAATTTCACCCCTCCGACCTCAGCCCAAATAGCGCAGGCTACGCCTGCGCCTGAGCCTAAGCGTAGCTGTTTTTTTTTCCAAAAAAAAATTCCAGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACCGGT</site>
                <isoschizomers>
                    <enzyme>AgeI</enzyme>
                    <enzyme>AsiAI</enzyme>
                    <enzyme>BshTI</enzyme>
                    <enzyme>CspAI</enzyme>
                    <enzyme>PinAI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>503 449 48</canonical_bands>
                <polymorphic_bands>551 449</polymorphic_bands>
            </assay>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 376 122</canonical_bands>
                <polymorphic_bands>624 376</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACCTCATTATGTACTACAACTTTC</pcr_primer_p1>
		<pcr_primer_p2>CGATTTTTGTCTGGAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>591</pcr_amplicon_size>
		<canonical_amplicon>AAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAACCGGTTTTTTCAAAATTTGGGGA</canonical_amplicon>
		<polymorphic_amplicon>AAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAACCRGTTTTTTCAAAATTTGGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34757</snp_id>
        <super_contig>c009401103.Contig1</super_contig>
        <contig_pos>12050</contig_pos>
        <strand>+</strand>
        <context>CCAAAAACCR[C/G]TTTTTTCAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAACCG</left_flank>
        <right_flank>TTTTTTCAAAATTTGGGGACTTTCCCACAATTATATGTGTTCACATACTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTACACGTCAAACAGTGGTGCGCGCTCGTCAAACAGTGCAAAGCCACAGTACATTAAAACTTAAAACGACCGTAACTTGCGTCAAAATGGTTGTAGAGGGATGGTAAAAAAACGAATCGATCAATGAACTCTACATTTTTGTTCCCCTTCATCTATACCCTATCTTTACGTTTAAGACCTCAAAATTGCCAAAAACCTCGAAAAAATGACGTTTTTTGTGTTTGACCGACTGTAGCTCGAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAACCGGTTTTTTCAAAATTTGGGGACTTTCCCACAATTATATGTGTTCACATACTATACTTAAAAAACGCGCAAGCCCAAGGCGGACCTTCAGTAAAAAAATTAGGAAATTCGTATAGAAGGTGTAGCTAAACGGTCAATTTGAAAGTTTAAAATCGACTTTTCGGGGGTCGGGGGGTCCAAAAAAAAAATTTTGTCTTGTTAAAAAAATGCGCCTTCCAAAGACGCATCGAATGGTCAAACTCCGAATTCATAAAATTAATCCGTTCAAAAGTTATATTAAAAAGAAAATTTTGAAATTTTGACTTTGGACCGTCATAGCGACGGTGCCCTTAGGTGAAAAACTAAGGATAGTATGTCCCTTTTTTTCGATGCTCTATCCAATGGTGAAAAAAAAACTTGAAAATTCCAATTTCACCCCTCCGACCTCAGCCCAAATAGCGCAGGCTACGCCTGCGCCTGAGCCTAAGCGTAGCTGTTTTTTTTTCCAAAAAAAAATTCCAGACA</canonical>
            <polymorphic>ATTACACGTCAAACAGTGGTGCGCGCTCGTCAAACAGTGCAAAGCCACAGTACATTAAAACTTAAAACGACCGTAACTTGCGTCAAAATGGTTGTAGAGGGATGGTAAAAAAACGAATCGATCAATGAACTCTACATTTTTGTTCCCCTTCATCTATACCCTATCTTTACGTTTAAGACCTCAAAATTGCCAAAAACCTCGAAAAAATGACGTTTTTTGTGTTTGACCGACTGTAGCTCGAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAACCGSTTTTTTCAAAATTTGGGGACTTTCCCACAATTATATGTGTTCACATACTATACTTAAAAAACGCGCAAGCCCAAGGCGGACCTTCAGTAAAAAAATTAGGAAATTCGTATAGAAGGTGTAGCTAAACGGTCAATTTGAAAGTTTAAAATCGACTTTTCGGGGGTCGGGGGGTCCAAAAAAAAAATTTTGTCTTGTTAAAAAAATGCGCCTTCCAAAGACGCATCGAATGGTCAAACTCCGAATTCATAAAATTAATCCGTTCAAAAGTTATATTAAAAAGAAAATTTTGAAATTTTGACTTTGGACCGTCATAGCGACGGTGCCCTTAGGTGAAAAACTAAGGATAGTATGTCCCTTTTTTTCGATGCTCTATCCAATGGTGAAAAAAAAACTTGAAAATTCCAATTTCACCCCTCCGACCTCAGCCCAAATAGCGCAGGCTACGCCTGCGCCTGAGCCTAAGCGTAGCTGTTTTTTTTTCCAAAAAAAAATTCCAGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACCGGT</site>
                <isoschizomers>
                    <enzyme>AgeI</enzyme>
                    <enzyme>AsiAI</enzyme>
                    <enzyme>BshTI</enzyme>
                    <enzyme>CspAI</enzyme>
                    <enzyme>PinAI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>504 448 48</canonical_bands>
                <polymorphic_bands>552 448</polymorphic_bands>
            </assay>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 375 122</canonical_bands>
                <polymorphic_bands>625 375</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACCTCATTATGTACTACAACTTTC</pcr_primer_p1>
		<pcr_primer_p2>CGATTTTTGTCTGGAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>591</pcr_amplicon_size>
		<canonical_amplicon>AAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAACCGGTTTTTTCAAAATTTGGGGAC</canonical_amplicon>
		<polymorphic_amplicon>AAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAACCGSTTTTTTCAAAATTTGGGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34758</snp_id>
        <super_contig>c009401103.Contig1</super_contig>
        <contig_pos>12070</contig_pos>
        <strand>+</strand>
        <context>AATTTGGGGA[A/C]TTTCCCACAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCGTTAACGAGATATGGACCCCAAAAACCGGTTTTTTCAAAATTTGGGGA</left_flank>
        <right_flank>TTTCCCACAATTATATGTGTTCACATACTATACTTAAAAAACGCGCAAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGCGCTCGTCAAACAGTGCAAAGCCACAGTACATTAAAACTTAAAACGACCGTAACTTGCGTCAAAATGGTTGTAGAGGGATGGTAAAAAAACGAATCGATCAATGAACTCTACATTTTTGTTCCCCTTCATCTATACCCTATCTTTACGTTTAAGACCTCAAAATTGCCAAAAACCTCGAAAAAATGACGTTTTTTGTGTTTGACCGACTGTAGCTCGAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAACCGGTTTTTTCAAAATTTGGGGACTTTCCCACAATTATATGTGTTCACATACTATACTTAAAAAACGCGCAAGCCCAAGGCGGACCTTCAGTAAAAAAATTAGGAAATTCGTATAGAAGGTGTAGCTAAACGGTCAATTTGAAAGTTTAAAATCGACTTTTCGGGGGTCGGGGGGTCCAAAAAAAAAATTTTGTCTTGTTAAAAAAATGCGCCTTCCAAAGACGCATCGAATGGTCAAACTCCGAATTCATAAAATTAATCCGTTCAAAAGTTATATTAAAAAGAAAATTTTGAAATTTTGACTTTGGACCGTCATAGCGACGGTGCCCTTAGGTGAAAAACTAAGGATAGTATGTCCCTTTTTTTCGATGCTCTATCCAATGGTGAAAAAAAAACTTGAAAATTCCAATTTCACCCCTCCGACCTCAGCCCAAATAGCGCAGGCTACGCCTGCGCCTGAGCCTAAGCGTAGCTGTTTTTTTTTCCAAAAAAAAATTCCAGACAAAAATCGATACGAAGCCGTT</canonical>
            <polymorphic>GCGCGCTCGTCAAACAGTGCAAAGCCACAGTACATTAAAACTTAAAACGACCGTAACTTGCGTCAAAATGGTTGTAGAGGGATGGTAAAAAAACGAATCGATCAATGAACTCTACATTTTTGTTCCCCTTCATCTATACCCTATCTTTACGTTTAAGACCTCAAAATTGCCAAAAACCTCGAAAAAATGACGTTTTTTGTGTTTGACCGACTGTAGCTCGAAAACGAACCGTTTAACATATTGTTTTAAAACCTTAAATCGAGCTATTTTTCAATTTCCAATCGATTAAAAGTGGTCCGAAAAGGATTCTATAGACAGTTTTTTAGCAGTTTTTTTCAAACGGCCATATCACACCCGGGTGGTCACAAAAGTGAAAATTTTTTTTGCCCATGATTTAAACCTCATTATGTACTACAACTTTCCTTCTGTCGGTACCATGCCGCCTCTGACCGTTAACGAGATATGGACCCCAAAAACCGGTTTTTTCAAAATTTGGGGAMTTTCCCACAATTATATGTGTTCACATACTATACTTAAAAAACGCGCAAGCCCAAGGCGGACCTTCAGTAAAAAAATTAGGAAATTCGTATAGAAGGTGTAGCTAAACGGTCAATTTGAAAGTTTAAAATCGACTTTTCGGGGGTCGGGGGGTCCAAAAAAAAAATTTTGTCTTGTTAAAAAAATGCGCCTTCCAAAGACGCATCGAATGGTCAAACTCCGAATTCATAAAATTAATCCGTTCAAAAGTTATATTAAAAAGAAAATTTTGAAATTTTGACTTTGGACCGTCATAGCGACGGTGCCCTTAGGTGAAAAACTAAGGATAGTATGTCCCTTTTTTTCGATGCTCTATCCAATGGTGAAAAAAAAACTTGAAAATTCCAATTTCACCCCTCCGACCTCAGCCCAAATAGCGCAGGCTACGCCTGCGCCTGAGCCTAAGCGTAGCTGTTTTTTTTTCCAAAAAAAAATTCCAGACAAAAATCGATACGAAGCCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCGTTAACGAGATATGGAC</pcr_primer_p1>
		<pcr_primer_p2>CGATTTTTGTCTGGAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>540</pcr_amplicon_size>
		<canonical_amplicon>GACCGTTAACGAGATATGGACCCCAAAAACCGGTTTTTTCAAAATTTGGGGACTTTCCCACAATTATATGTGTTCACATACTATACTTAAAAAACGCGCAAGCCCAAGGCGGACCTTCAGTAAAAAAATTAGGAAATTCGTATAGAAGGTGTAGCTAAACGGTCAATTTGAAAGTTTAAAATCGACTTTTCGGGGGTCGGGGGGTCCAAAAAAAAAATTTTGTCTTGTTAAAAAAATGCGCCTTCCAAAGACGCATCGAATGGTCAAACTCCGAATTCATAAAATTAATCCGTTCAAAAGTTATATTAAAAAGAAAATTTTGAAATTTTGACTTTGGACCGTCATAGCGACGGTGCCCTTAGGTGAAAAACTAAGGATAGTATGTCCCTTTTTTTCGATGCTCTATCCAATGGTGAAAAAAAAACTTGAAAATTCCAATTTCACCCCTCCGACCTCAGCCCAAATAGCGCAGGCTACGCCTGCGCCTGAGCCTAAGCGTAGCTGTTTTTTTTTCCAAAAAAAAATTCCAGACAAAAATCG</canonical_amplicon>
		<polymorphic_amplicon>GACCGTTAACGAGATATGGACCCCAAAAACCGGTTTTTTCAAAATTTGGGGAMTTTCCCACAATTATATGTGTTCACATACTATACTTAAAAAACGCGCAAGCCCAAGGCGGACCTTCAGTAAAAAAATTAGGAAATTCGTATAGAAGGTGTAGCTAAACGGTCAATTTGAAAGTTTAAAATCGACTTTTCGGGGGTCGGGGGGTCCAAAAAAAAAATTTTGTCTTGTTAAAAAAATGCGCCTTCCAAAGACGCATCGAATGGTCAAACTCCGAATTCATAAAATTAATCCGTTCAAAAGTTATATTAAAAAGAAAATTTTGAAATTTTGACTTTGGACCGTCATAGCGACGGTGCCCTTAGGTGAAAAACTAAGGATAGTATGTCCCTTTTTTTCGATGCTCTATCCAATGGTGAAAAAAAAACTTGAAAATTCCAATTTCACCCCTCCGACCTCAGCCCAAATAGCGCAGGCTACGCCTGCGCCTGAGCCTAAGCGTAGCTGTTTTTTTTTCCAAAAAAAAATTCCAGACAAAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34759</snp_id>
        <super_contig>c009401342.Contig1</super_contig>
        <contig_pos>11150</contig_pos>
        <strand></strand>
        <context>taggagcaga[G/A]atacttaaac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACCCTGCAATTCAGATTAAATTTGAAGTTTCTAGCTCATCTAGGAGCAGA</left_flank>
        <right_flank>ATACTTAAACTTGAAATTTAGAGAGACGCAGACAACGAGATACTCTAATT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACGAGATCTACAAAACTCCAAAACGCGGTATATCTAATAATTTTTGTACAGAAATGTAGGAAATGAAAAGTCCCACATTTCTAAACAAAAATCACATATCTAGCTAATCTAGAAGCCAAGATATAGGCATTTAAAGTTCAGAGAGACGCAGAAAGTTAGAACGTCTCGTTGCCTGCGTCTCTCTTTGAACAGATGTATCTCAGCTTCTAGATGAGCCAGCGACTTCAAAAAAATTTAGAATTGTAGAATTTGAAAATTCCCACATTTCTAGCAAACAATTACGTTTTTAGCTCATCTAGCAGCCAAGATATGAGCATTTGAAGTTTAGAGAGACGCAGACAATGAGACGATCTAATTGTCTGCGTCTCACTAAACTTCAAATGGGTATATATTGGCTTCTAGGAAACCTAGAAGTAGGATTTTTGTTCAGAAATGTAGAAAATTGAAAACCCTGCAATTCAGATTAAATTTGAAGTTTCTAGCTCATCTAGGAGCAGAGATACTTAAACTTGAAATTTAGAGAGACGCAGACAACGAGATACTCTAATTGTCTGCGTCTCTCTAAACTTCAAGCGGCGGTAGCTCGACTTTCAGATGAGCTAGAAATATGATTTTTGAACAAAAATAAAGCAAATTAAAAATTGTTTGATTCAACTCACCGTCGGCGGCCTCACCGCACTCAGCCATCTTTCCCGATCCGTCTCACTATCAGCTGATAACAAGAGCTCCGTCTGCTTCTCCCTGGCATTCCTCATCAACGTACACAAGAACAAATGGGGTCTTCCAACTAGATTGCTAACAGCACCCAATGGAATTTTCGGATTATCCGGCTCAATCGGTTGCATATCAACGAACCGCCTCGCCGCGTAGTCCTTACACACGAATGTCCCATTCAGCTTCTTCTTTGTGATCATGATCATATCGGAGAACAGGAAGACGTGAAGGGTTCGTGCTTTTTGCCGACTTTGGAGGATGTTTGAGGATCTTCGCTCCACTAGC</canonical>
            <polymorphic>TACGAGATCTACAAAACTCCAAAACGCGGTATATCTAATAATTTTTGTACAGAAATGTAGGAAATGAAAAGTCCCACATTTCTAAACAAAAATCACATATCTAGCTAATCTAGAAGCCAAGATATAGGCATTTAAAGTTCAGAGAGACGCAGAAAGTTAGAACGTCTCGTTGCCTGCGTCTCTCTTTGAACAGATGTATCTCAGCTTCTAGATGAGCCAGCGACTTCAAAAAAATTTAGAATTGTAGAATTTGAAAATTCCCACATTTCTAGCAAACAATTACGTTTTTAGCTCATCTAGCAGCCAAGATATGAGCATTTGAAGTTTAGAGAGACGCAGACAATGAGACGATCTAATTGTCTGCGTCTCACTAAACTTCAAATGGGTATATATTGGCTTCTAGGAAACCTAGAAGTAGGATTTTTGTTCAGAAATGTAGAAAATTGAAAACCCTGCAATTCAGATTAAATTTGAAGTTTCTAGCTCATCTAGGAGCAGARATACTTAAACTTGAAATTTAGAGAGACGCAGACAACGAGATACTCTAATTGTCTGCGTCTCTCTAAACTTCAAGCGGCGGTAGCTCGACTTTCAGATGAGCTAGAAATATGATTTTTGAACAAAAATAAAGCAAATTAAAAATTGTTTGATTCAACTCACCGTCGGCGGCCTCACCGCACTCAGCCATCTTTCCCGATCCGTCTCACTATCAGCTGATAACAAGAGCTCCGTCTGCTTCTCCCTGGCATTCCTCATCAACGTACACAAGAACAAATGGGGTCTTCCAACTAGATTGCTAACAGCACCCAATGGAATTTTCGGATTATCCGGCTCAATCGGTTGCATATCAACGAACCGCCTCGCCGCGTAGTCCTTACACACGAATGTCCCATTCAGCTTCTTCTTTGTGATCATGATCATATCGGAGAACAGGAAGACGTGAAGGGTTCGTGCTTTTTGCCGACTTTGGAGGATGTTTGAGGATCTTCGCTCCACTAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAACGCGGTATATCTAATAAT</pcr_primer_p1>
		<pcr_primer_p2>GGTGAGTTGAATCAAACAATTT</pcr_primer_p2>
		<pcr_amplicon_size>642</pcr_amplicon_size>
		<canonical_amplicon>CAAAACGCGGTATATCTAATAATTTTTGTACAGAAATGTAGGAAATGAAAAGTCCCACATTTCTAAACAAAAATCACATATCTAGCTAATCTAGAAGCCAAGATATAGGCATTTAAAGTTCAGAGAGACGCAGAAAGTTAGAACGTCTCGTTGCCTGCGTCTCTCTTTGAACAGATGTATCTCAGCTTCTAGATGAGCCAGCGACTTCAAAAAAATTTAGAATTGTAGAATTTGAAAATTCCCACATTTCTAGCAAACAATTACGTTTTTAGCTCATCTAGCAGCCAAGATATGAGCATTTGAAGTTTAGAGAGACGCAGACAATGAGACGATCTAATTGTCTGCGTCTCACTAAACTTCAAATGGGTATATATTGGCTTCTAGGAAACCTAGAAGTAGGATTTTTGTTCAGAAATGTAGAAAATTGAAAACCCTGCAATTCAGATTAAATTTGAAGTTTCTAGCTCATCTAGGAGCAGAGATACTTAAACTTGAAATTTAGAGAGACGCAGACAACGAGATACTCTAATTGTCTGCGTCTCTCTAAACTTCAAGCGGCGGTAGCTCGACTTTCAGATGAGCTAGAAATATGATTTTTGAACAAAAATAAAGCAAATTAAAAATTGTTTGATTCAACTCACC</canonical_amplicon>
		<polymorphic_amplicon>CAAAACGCGGTATATCTAATAATTTTTGTACAGAAATGTAGGAAATGAAAAGTCCCACATTTCTAAACAAAAATCACATATCTAGCTAATCTAGAAGCCAAGATATAGGCATTTAAAGTTCAGAGAGACGCAGAAAGTTAGAACGTCTCGTTGCCTGCGTCTCTCTTTGAACAGATGTATCTCAGCTTCTAGATGAGCCAGCGACTTCAAAAAAATTTAGAATTGTAGAATTTGAAAATTCCCACATTTCTAGCAAACAATTACGTTTTTAGCTCATCTAGCAGCCAAGATATGAGCATTTGAAGTTTAGAGAGACGCAGACAATGAGACGATCTAATTGTCTGCGTCTCACTAAACTTCAAATGGGTATATATTGGCTTCTAGGAAACCTAGAAGTAGGATTTTTGTTCAGAAATGTAGAAAATTGAAAACCCTGCAATTCAGATTAAATTTGAAGTTTCTAGCTCATCTAGGAGCAGARATACTTAAACTTGAAATTTAGAGAGACGCAGACAACGAGATACTCTAATTGTCTGCGTCTCTCTAAACTTCAAGCGGCGGTAGCTCGACTTTCAGATGAGCTAGAAATATGATTTTTGAACAAAAATAAAGCAAATTAAAAATTGTTTGATTCAACTCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34760</snp_id>
        <super_contig>c009401342.Contig1</super_contig>
        <contig_pos>26915</contig_pos>
        <strand></strand>
        <context>tcaaaatgat[T/A]tataaatcra</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAATGAAAAAAATTGGAAAATGTAGATTTTGAAAAGTTCTTCAAAATGAT</left_flank>
        <right_flank>TATAAATCGAATATATTGAAAAAGAAGTTTTTGATGTAACAATAGCAATA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTGATATCTCTCACAGGAGCTGAGATAATTATGGACAAAGTTTGACTAGCTTTGCAGCTCTAAAACTCACTTCAAAATTAATATTTTTAAATGAAAAAAATTGGAGAAAATGTAGATTCTTTGAAGCTCTACAAAATAATATAAAATTTCATTATTTTTAAAAGAACTATTTTTTTTACAGAAGGCGCTAAAGTAGACGCCCATTCTGCAGTTTCAAATATGATAAGGCGCGGTTTCAACCTTATAGCTCGCGTCAACCTTAATATTTTTACATGAAACAAATTGAAAAATGTAGATTTTAAAAAGTTCTACAAAATGATATAAAATTTGACTATATTTGAAAAACACATTTCTTTACAGAAGACGCTAAAGTAGACGCCCATTCTGCAGTTTCAAATATGGGGAAGCTTTTAGGCTCATAACTCCTTTCAAAATTAATATTTTTAAATGAAAAAAATTGGAAAATGTAGATTTTGAAAAGTTCTTCAAAATGATTTATAAATCGAATATATTGAAAAAGAAGTTTTTGATGTAACAATAGCAATAAAATATAGGCTCTCGACAACATAGCCAAACACTAGAGGGAGGGGGGAGAGGGGTTGTAAATCAATCAAATTTTATGAGTTATGAGGAATAGAGAATGTACTATTTTATGGGATCAGTGGCCTAGGAATTTGGTTTTAGAATAACACAGTGGCCTAGGACAGGGTGAAGCTAGGCCACGTCTTCTGGAAGAAGCTCTAGAATCTATAGAATCGGCTAAAATAAGGCCATATTTAGCAAAAAAAAAACTGTAGAAAACTATATATTAGCCTAGAAAAAAAATTAGAACATTCCGGAAAACTAGTTCATAAAAACGAAAAAAAAAACTAGTTCCACAGTTTCCAATGTACCTTTAATAACAAGTTGAACCCCATGACCATCTCCCTTGCCCACCTAACAGACAAATATTTGAGTTTTCTTTTCGAATGCAAGCCAACCGTAAACCCGTTTATT</canonical>
            <polymorphic>TTTTTTGATATCTCTCACAGGAGCTGAGATAATTATGGACAAAGTTTGACTAGCTTTGCAGCTCTAAAACTCACTTCAAAATTAATATTTTTAAATGAAAAAAATTGGAGAAAATGTAGATTCTTTGAAGCTCTACAAAATAATATAAAATTTCATTATTTTTAAAAGAACTATTTTTTTTACAGAAGGCGCTAAAGTAGACGCCCATTCTGCAGTTTCAAATATGATAAGGCGCGGTTTCAACCTTATAGCTCGCGTCAACCTTAATATTTTTACATGAAACAAATTGAAAAATGTAGATTTTAAAAAGTTCTACAAAATGATATAAAATTTGACTATATTTGAAAAACACATTTCTTTACAGAAGACGCTAAAGTAGACGCCCATTCTGCAGTTTCAAATATGGGGAAGCTTTTAGGCTCATAACTCCTTTCAAAATTAATATTTTTAAATGAAAAAAATTGGAAAATGTAGATTTTGAAAAGTTCTTCAAAATGATWTATAAATCGAATATATTGAAAAAGAAGTTTTTGATGTAACAATAGCAATAAAATATAGGCTCTCGACAACATAGCCAAACACTAGAGGGAGGGGGGAGAGGGGTTGTAAATCAATCAAATTTTATGAGTTATGAGGAATAGAGAATGTACTATTTTATGGGATCAGTGGCCTAGGAATTTGGTTTTAGAATAACACAGTGGCCTAGGACAGGGTGAAGCTAGGCCACGTCTTCTGGAAGAAGCTCTAGAATCTATAGAATCGGCTAAAATAAGGCCATATTTAGCAAAAAAAAAACTGTAGAAAACTATATATTAGCCTAGAAAAAAAATTAGAACATTCCGGAAAACTAGTTCATAAAAACGAAAAAAAAAACTAGTTCCACAGTTTCCAATGTACCTTTAATAACAAGTTGAACCCCATGACCATCTCCCTTGCCCACCTAACAGACAAATATTTGAGTTTTCTTTTCGAATGCAAGCCAACCGTAAACCCGTTTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTGGGCTCTCAATTAAATA</pcr_primer_p1>
		<pcr_primer_p2>GAGCCTATATTTTATTGCTATTGTT</pcr_primer_p2>
		<pcr_amplicon_size>650</pcr_amplicon_size>
		<canonical_amplicon>TTTATAAATCGAATATATTGAAAAAGAAGTTTTTGATGTAACAATAGCAATAAAATATAGGCTC</canonical_amplicon>
		<polymorphic_amplicon>TWTATAAATCGAATATATTGAAAAAGAAGTTTTTGATGTAACAATAGCAATAAAATATAGGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34761</snp_id>
        <super_contig>c009401342.Contig1</super_contig>
        <contig_pos>26924</contig_pos>
        <strand></strand>
        <context>twtataaatc[G/A]aatatattga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAATTGGAAAATGTAGATTTTGAAAAGTTCTTCAAAATGATTTATAAATC</left_flank>
        <right_flank>AATATATTGAAAAAGAAGTTTTTGATGTAACAATAGCAATAAAATATAGG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTCTCACAGGAGCTGAGATAATTATGGACAAAGTTTGACTAGCTTTGCAGCTCTAAAACTCACTTCAAAATTAATATTTTTAAATGAAAAAAATTGGAGAAAATGTAGATTCTTTGAAGCTCTACAAAATAATATAAAATTTCATTATTTTTAAAAGAACTATTTTTTTTACAGAAGGCGCTAAAGTAGACGCCCATTCTGCAGTTTCAAATATGATAAGGCGCGGTTTCAACCTTATAGCTCGCGTCAACCTTAATATTTTTACATGAAACAAATTGAAAAATGTAGATTTTAAAAAGTTCTACAAAATGATATAAAATTTGACTATATTTGAAAAACACATTTCTTTACAGAAGACGCTAAAGTAGACGCCCATTCTGCAGTTTCAAATATGGGGAAGCTTTTAGGCTCATAACTCCTTTCAAAATTAATATTTTTAAATGAAAAAAATTGGAAAATGTAGATTTTGAAAAGTTCTTCAAAATGATTTATAAATCGAATATATTGAAAAAGAAGTTTTTGATGTAACAATAGCAATAAAATATAGGCTCTCGACAACATAGCCAAACACTAGAGGGAGGGGGGAGAGGGGTTGTAAATCAATCAAATTTTATGAGTTATGAGGAATAGAGAATGTACTATTTTATGGGATCAGTGGCCTAGGAATTTGGTTTTAGAATAACACAGTGGCCTAGGACAGGGTGAAGCTAGGCCACGTCTTCTGGAAGAAGCTCTAGAATCTATAGAATCGGCTAAAATAAGGCCATATTTAGCAAAAAAAAAACTGTAGAAAACTATATATTAGCCTAGAAAAAAAATTAGAACATTCCGGAAAACTAGTTCATAAAAACGAAAAAAAAAACTAGTTCCACAGTTTCCAATGTACCTTTAATAACAAGTTGAACCCCATGACCATCTCCCTTGCCCACCTAACAGACAAATATTTGAGTTTTCTTTTCGAATGCAAGCCAACCGTAAACCCGTTTATTTACCGCACA</canonical>
            <polymorphic>ATCTCTCACAGGAGCTGAGATAATTATGGACAAAGTTTGACTAGCTTTGCAGCTCTAAAACTCACTTCAAAATTAATATTTTTAAATGAAAAAAATTGGAGAAAATGTAGATTCTTTGAAGCTCTACAAAATAATATAAAATTTCATTATTTTTAAAAGAACTATTTTTTTTACAGAAGGCGCTAAAGTAGACGCCCATTCTGCAGTTTCAAATATGATAAGGCGCGGTTTCAACCTTATAGCTCGCGTCAACCTTAATATTTTTACATGAAACAAATTGAAAAATGTAGATTTTAAAAAGTTCTACAAAATGATATAAAATTTGACTATATTTGAAAAACACATTTCTTTACAGAAGACGCTAAAGTAGACGCCCATTCTGCAGTTTCAAATATGGGGAAGCTTTTAGGCTCATAACTCCTTTCAAAATTAATATTTTTAAATGAAAAAAATTGGAAAATGTAGATTTTGAAAAGTTCTTCAAAATGATTTATAAATCRAATATATTGAAAAAGAAGTTTTTGATGTAACAATAGCAATAAAATATAGGCTCTCGACAACATAGCCAAACACTAGAGGGAGGGGGGAGAGGGGTTGTAAATCAATCAAATTTTATGAGTTATGAGGAATAGAGAATGTACTATTTTATGGGATCAGTGGCCTAGGAATTTGGTTTTAGAATAACACAGTGGCCTAGGACAGGGTGAAGCTAGGCCACGTCTTCTGGAAGAAGCTCTAGAATCTATAGAATCGGCTAAAATAAGGCCATATTTAGCAAAAAAAAAACTGTAGAAAACTATATATTAGCCTAGAAAAAAAATTAGAACATTCCGGAAAACTAGTTCATAAAAACGAAAAAAAAAACTAGTTCCACAGTTTCCAATGTACCTTTAATAACAAGTTGAACCCCATGACCATCTCCCTTGCCCACCTAACAGACAAATATTTGAGTTTTCTTTTCGAATGCAAGCCAACCGTAAACCCGTTTATTTACCGCACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 406 56 39</canonical_bands>
                <polymorphic_bands>555 406 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTGGGCTCTCAATTA</pcr_primer_p1>
		<pcr_primer_p2>CGAGAGCCTATATTTTATTGCTA</pcr_primer_p2>
		<pcr_amplicon_size>655</pcr_amplicon_size>
		<canonical_amplicon>CGAATATATTGAAAAAGAAGTTTTTGATGTAACAATAGCAATAAAATATAGGCTCTCG</canonical_amplicon>
		<polymorphic_amplicon>CRAATATATTGAAAAAGAAGTTTTTGATGTAACAATAGCAATAAAATATAGGCTCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34762</snp_id>
        <super_contig>c009401342.Contig1</super_contig>
        <contig_pos>26939</contig_pos>
        <strand></strand>
        <context>tattgaaaaa[G/A]AAGTTTTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GATTTTGAAAAGTTCTTCAAAATGATTTATAAATCGAATATATTGAAAAA</left_flank>
        <right_flank>AAGTTTTTGATGTAACAATAGCAATAAAATATAGGCTCTCGACAACATAG</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGATAATTATGGACAAAGTTTGACTAGCTTTGCAGCTCTAAAACTCACTTCAAAATTAATATTTTTAAATGAAAAAAATTGGAGAAAATGTAGATTCTTTGAAGCTCTACAAAATAATATAAAATTTCATTATTTTTAAAAGAACTATTTTTTTTACAGAAGGCGCTAAAGTAGACGCCCATTCTGCAGTTTCAAATATGATAAGGCGCGGTTTCAACCTTATAGCTCGCGTCAACCTTAATATTTTTACATGAAACAAATTGAAAAATGTAGATTTTAAAAAGTTCTACAAAATGATATAAAATTTGACTATATTTGAAAAACACATTTCTTTACAGAAGACGCTAAAGTAGACGCCCATTCTGCAGTTTCAAATATGGGGAAGCTTTTAGGCTCATAACTCCTTTCAAAATTAATATTTTTAAATGAAAAAAATTGGAAAATGTAGATTTTGAAAAGTTCTTCAAAATGATTTATAAATCGAATATATTGAAAAAGAAGTTTTTGATGTAACAATAGCAATAAAATATAGGCTCTCGACAACATAGCCAAACACTAGAGGGAGGGGGGAGAGGGGTTGTAAATCAATCAAATTTTATGAGTTATGAGGAATAGAGAATGTACTATTTTATGGGATCAGTGGCCTAGGAATTTGGTTTTAGAATAACACAGTGGCCTAGGACAGGGTGAAGCTAGGCCACGTCTTCTGGAAGAAGCTCTAGAATCTATAGAATCGGCTAAAATAAGGCCATATTTAGCAAAAAAAAAACTGTAGAAAACTATATATTAGCCTAGAAAAAAAATTAGAACATTCCGGAAAACTAGTTCATAAAAACGAAAAAAAAAACTAGTTCCACAGTTTCCAATGTACCTTTAATAACAAGTTGAACCCCATGACCATCTCCCTTGCCCACCTAACAGACAAATATTTGAGTTTTCTTTTCGAATGCAAGCCAACCGTAAACCCGTTTATTTACCGCACAGATCAAGAAAACGAT</canonical>
            <polymorphic>TGAGATAATTATGGACAAAGTTTGACTAGCTTTGCAGCTCTAAAACTCACTTCAAAATTAATATTTTTAAATGAAAAAAATTGGAGAAAATGTAGATTCTTTGAAGCTCTACAAAATAATATAAAATTTCATTATTTTTAAAAGAACTATTTTTTTTACAGAAGGCGCTAAAGTAGACGCCCATTCTGCAGTTTCAAATATGATAAGGCGCGGTTTCAACCTTATAGCTCGCGTCAACCTTAATATTTTTACATGAAACAAATTGAAAAATGTAGATTTTAAAAAGTTCTACAAAATGATATAAAATTTGACTATATTTGAAAAACACATTTCTTTACAGAAGACGCTAAAGTAGACGCCCATTCTGCAGTTTCAAATATGGGGAAGCTTTTAGGCTCATAACTCCTTTCAAAATTAATATTTTTAAATGAAAAAAATTGGAAAATGTAGATTTTGAAAAGTTCTTCAAAATGATTTATAAATCGAATATATTGAAAAARAAGTTTTTGATGTAACAATAGCAATAAAATATAGGCTCTCGACAACATAGCCAAACACTAGAGGGAGGGGGGAGAGGGGTTGTAAATCAATCAAATTTTATGAGTTATGAGGAATAGAGAATGTACTATTTTATGGGATCAGTGGCCTAGGAATTTGGTTTTAGAATAACACAGTGGCCTAGGACAGGGTGAAGCTAGGCCACGTCTTCTGGAAGAAGCTCTAGAATCTATAGAATCGGCTAAAATAAGGCCATATTTAGCAAAAAAAAAACTGTAGAAAACTATATATTAGCCTAGAAAAAAAATTAGAACATTCCGGAAAACTAGTTCATAAAAACGAAAAAAAAAACTAGTTCCACAGTTTCCAATGTACCTTTAATAACAAGTTGAACCCCATGACCATCTCCCTTGCCCACCTAACAGACAAATATTTGAGTTTTCTTTTCGAATGCAAGCCAACCGTAAACCCGTTTATTTACCGCACAGATCAAGAAAACGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTGGGCTCTCAATTAAATA</pcr_primer_p1>
		<pcr_primer_p2>CTCTAGTGTTTGGCTATGTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>675</pcr_amplicon_size>
		<canonical_amplicon>AGAAGTTTTTGATGTAACAATAGCAATAAAATATAGGCTCTCGACAACATAGCCAAACACTAGAG</canonical_amplicon>
		<polymorphic_amplicon>ARAAGTTTTTGATGTAACAATAGCAATAAAATATAGGCTCTCGACAACATAGCCAAACACTAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34763</snp_id>
        <super_contig>c009401342.Contig1</super_contig>
        <contig_pos>27272</contig_pos>
        <strand>+</strand>
        <context>ACTAGTTCAT[C/G]AAAACGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TATATATTAGCCTAGAAAAAAAATTAGAACATTCCGGAAAACTAGTTCAT</left_flank>
        <right_flank>AAAACGAAAAAAAAAACTAGTTCCACAGTTTCCAATGTACCTTTAATAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTACAGAAGACGCTAAAGTAGACGCCCATTCTGCAGTTTCAAATATGGGGAAGCTTTTAGGCTCATAACTCCTTTCAAAATTAATATTTTTAAATGAAAAAAATTGGAAAATGTAGATTTTGAAAAGTTCTTCAAAATGATTTATAAATCGAATATATTGAAAAAGAAGTTTTTGATGTAACAATAGCAATAAAATATAGGCTCTCGACAACATAGCCAAACACTAGAGGGAGGGGGGAGAGGGGTTGTAAATCAATCAAATTTTATGAGTTATGAGGAATAGAGAATGTACTATTTTATGGGATCAGTGGCCTAGGAATTTGGTTTTAGAATAACACAGTGGCCTAGGACAGGGTGAAGCTAGGCCACGTCTTCTGGAAGAAGCTCTAGAATCTATAGAATCGGCTAAAATAAGGCCATATTTAGCAAAAAAAAAACTGTAGAAAACTATATATTAGCCTAGAAAAAAAATTAGAACATTCCGGAAAACTAGTTCATAAAAACGAAAAAAAAAACTAGTTCCACAGTTTCCAATGTACCTTTAATAACAAGTTGAACCCCATGACCATCTCCCTTGCCCACCTAACAGACAAATATTTGAGTTTTCTTTTCGAATGCAAGCCAACCGTAAACCCGTTTATTTACCGCACAGATCAAGAAAACGATTCACACATTCTTGGAAGATTTCGAACGTTTTAAAGGGACAGAGTTCTAGGAGACAGCAATTTTGGAACCTTTTTCTTTGACTTTATTTATCTTGCTTCCTGTAAAAGATATCAAAAAATAGTTAACTGATAAAATGTTCATCATAAAATCAGCAACATTTTATCAGTTAACATAATTTTGATATCTTTTCTAGGAGCTAAGATAATCTACGTTTAAGATATAACACCCATAAAAAGAGAGGAAGGTGGTGGCTTAAATTAGACGTTGTATAGGCTTTGAGGATCTTCAGTTTCTAATTTGAATTTTAAAGAAAACCGGGAAAACTTCAAAAAG</canonical>
            <polymorphic>TTTACAGAAGACGCTAAAGTAGACGCCCATTCTGCAGTTTCAAATATGGGGAAGCTTTTAGGCTCATAACTCCTTTCAAAATTAATATTTTTAAATGAAAAAAATTGGAAAATGTAGATTTTGAAAAGTTCTTCAAAATGATTTATAAATCGAATATATTGAAAAAGAAGTTTTTGATGTAACAATAGCAATAAAATATAGGCTCTCGACAACATAGCCAAACACTAGAGGGAGGGGGGAGAGGGGTTGTAAATCAATCAAATTTTATGAGTTATGAGGAATAGAGAATGTACTATTTTATGGGATCAGTGGCCTAGGAATTTGGTTTTAGAATAACACAGTGGCCTAGGACAGGGTGAAGCTAGGCCACGTCTTCTGGAAGAAGCTCTAGAATCTATAGAATCGGCTAAAATAAGGCCATATTTAGCAAAAAAAAAACTGTAGAAAACTATATATTAGCCTAGAAAAAAAATTAGAACATTCCGGAAAACTAGTTCATSAAAACGAAAAAAAAAACTAGTTCCACAGTTTCCAATGTACCTTTAATAACAAGTTGAACCCCATGACCATCTCCCTTGCCCACCTAACAGACAAATATTTGAGTTTTCTTTTCGAATGCAAGCCAACCGTAAACCCGTTTATTTACCGCACAGATCAAGAAAACGATTCACACATTCTTGGAAGATTTCGAACGTTTTAAAGGGACAGAGTTCTAGGAGACAGCAATTTTGGAACCTTTTTCTTTGACTTTATTTATCTTGCTTCCTGTAAAAGATATCAAAAAATAGTTAACTGATAAAATGTTCATCATAAAATCAGCAACATTTTATCAGTTAACATAATTTTGATATCTTTTCTAGGAGCTAAGATAATCTACGTTTAAGATATAACACCCATAAAAAGAGAGGAAGGTGGTGGCTTAAATTAGACGTTGTATAGGCTTTGAGGATCTTCAGTTTCTAATTTGAATTTTAAAGAAAACCGGGAAAACTTCAAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTAGGAATTTGGTTTTAGAATAA</pcr_primer_p1>
		<pcr_primer_p2>GGGTTCAACTTGTTATTAAAGGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCTAGGAATTTGGTTTTAGAATAACACAGTGGCCTAGGACAGGGTGAAGCTAGGCCACGTCTTCTGGAAGAAGCTCTAGAATCTATAGAATCGGCTAAAATAAGGCCATATTTAGCAAAAAAAAAACTGTAGAAAACTATATATTAGCCTAGAAAAAAAATTAGAACATTCCGGAAAACTAGTTCATAAAAACGAAAAAAAAAACTAGTTCCACAGTTTCCAATGTACCTTTAATAACAAGTTGAACCC</canonical_amplicon>
		<polymorphic_amplicon>CCTAGGAATTTGGTTTTAGAATAACACAGTGGCCTAGGACAGGGTGAAGCTAGGCCACGTCTTCTGGAAGAAGCTCTAGAATCTATAGAATCGGCTAAAATAAGGCCATATTTAGCAAAAAAAAAACTGTAGAAAACTATATATTAGCCTAGAAAAAAAATTAGAACATTCCGGAAAACTAGTTCATSAAAACGAAAAAAAAAACTAGTTCCACAGTTTCCAATGTACCTTTAATAACAAGTTGAACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34764</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>12808</contig_pos>
        <strand>+</strand>
        <context>ACAACCTCTT[A/T]CTATATTATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACAATTCTCCAACTACCATGAAGGCACTCGGAATTTTGCTACAACCTCTT</left_flank>
        <right_flank>CTATATTATTAACAATAGTTCTGCTGGTTCTGATAATATTTGACGCGTAT</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAATTAAGGAACAGGAACCTGATTTTCTGAAACACAACATTCTATTTATTTTTTTGCCGAAACTGAGTGTTTGAATCTGGTCTGTTGCAATCTAATGCTCTTTATTCTCAACTTCTTGTTTCGAATTTTTTTTCACGTTCTCAGTTCACTTGTCTTTCTCTGATTTGTCATAACATTAGCAATACAAAGTTCTCGTCACTTGCTGGAAACGTTCACTGTTTGTACATCACAGAAAACTCATATAGAACACCAACGACAGATAGAAACATTCATATGCATAGAAGCAGTACCAAAACCATACACAATTCAGATGACTCATTTCTTAATAAAAAAGTGCACATTCATTGTTCAAGCACCTCCCACCGGTACCACCGCCAGTAGAGTCTTTTGTCACAAAACCAACTGATAGTTTTATTTGTACCAAACTCTTTCTTGTTCCCGTTTTTGCACAATTCTCCAACTACCATGAAGGCACTCGGAATTTTGCTACAACCTCTTACTATATTATTAACAATAGTTCTGCTGGTTCTGATAATATTTGACGCGTATTCATTTGGTGCGGTTCCTTTTTCATTTGAATAGAAAGAAAATTGAGAATCTTAAGCATGGACAACTGACGATTCGGGGATTTATACCAACAATGGAATCAGCCTATCTGCGTGTACACCTTGGAATATTTTGGGATGTCCAAATCTTTGGAATGTGAGTTGAAATGTATTTTTCCGTTTTCAATAATCTGTTTGTCATTTTTTGCGTTTTTGGTGAGTAAGAAAGGATTCTAGCAAAAAATTCGAATTTTGAACAGTTCTAAAGACTCCGGAATTCTGAAGTTTTCTGAATTGCAAATTATTTTGAAATTTTGTAATTCTAAAAATTAGAAACTCGGAACTTTTGACATTCCGAAAATTCCAAAAAAAGCCTTTCCAAATCCCTGAATTCGTCTGTGGCATATAGTAAATGCTTTATTAGAACGTCATCCTATATTCTCACTTTGAGCTG</canonical>
            <polymorphic>ATAATTAAGGAACAGGAACCTGATTTTCTGAAACACAACATTCTATTTATTTTTTTGCCGAAACTGAGTGTTTGAATCTGGTCTGTTGCAATCTAATGCTCTTTATTCTCAACTTCTTGTTTCGAATTTTTTTTCACGTTCTCAGTTCACTTGTCTTTCTCTGATTTGTCATAACATTAGCAATACAAAGTTCTCGTCACTTGCTGGAAACGTTCACTGTTTGTACATCACAGAAAACTCATATAGAACACCAACGACAGATAGAAACATTCATATGCATAGAAGCAGTACCAAAACCATACACAATTCAGATGACTCATTTCTTAATAAAAAAGTGCACATTCATTGTTCAAGCACCTCCCACCGGTACCACCGCCAGTAGAGTCTTTTGTCACAAAACCAACTGATAGTTTTATTTGTACCAAACTCTTTCTTGTTCCCGTTTTTGCACAATTCTCCAACTACCATGAAGGCACTCGGAATTTTGCTACAACCTCTTWCTATATTATTAACAATAGTTCTGCTGGTTCTGATAATATTTGACGCGTATTCATTTGGTGCGGTTCCTTTTTCATTTGAATAGAAAGAAAATTGAGAATCTTAAGCATGGACAACTGACGATTCGGGGATTTATACCAACAATGGAATCAGCCTATCTGCGTGTACACCTTGGAATATTTTGGGATGTCCAAATCTTTGGAATGTGAGTTGAAATGTATTTTTCCGTTTTCAATAATCTGTTTGTCATTTTTTGCGTTTTTGGTGAGTAAGAAAGGATTCTAGCAAAAAATTCGAATTTTGAACAGTTCTAAAGACTCCGGAATTCTGAAGTTTTCTGAATTGCAAATTATTTTGAAATTTTGTAATTCTAAAAATTAGAAACTCGGAACTTTTGACATTCCGAAAATTCCAAAAAAAGCCTTTCCAAATCCCTGAATTCGTCTGTGGCATATAGTAAATGCTTTATTAGAACGTCATCCTATATTCTCACTTTGAGCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAATTCAGATGACTCATTTCTT</pcr_primer_p1>
		<pcr_primer_p2>ATGAATACGCGTCAAATATTATC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACAATTCAGATGACTCATTTCTTAATAAAAAAGTGCACATTCATTGTTCAAGCACCTCCCACCGGTACCACCGCCAGTAGAGTCTTTTGTCACAAAACCAACTGATAGTTTTATTTGTACCAAACTCTTTCTTGTTCCCGTTTTTGCACAATTCTCCAACTACCATGAAGGCACTCGGAATTTTGCTACAACCTCTTACTATATTATTAACAATAGTTCTGCTGGTTCTGATAATATTTGACGCGTATTCAT</canonical_amplicon>
		<polymorphic_amplicon>ACAATTCAGATGACTCATTTCTTAATAAAAAAGTGCACATTCATTGTTCAAGCACCTCCCACCGGTACCACCGCCAGTAGAGTCTTTTGTCACAAAACCAACTGATAGTTTTATTTGTACCAAACTCTTTCTTGTTCCCGTTTTTGCACAATTCTCCAACTACCATGAAGGCACTCGGAATTTTGCTACAACCTCTTWCTATATTATTAACAATAGTTCTGCTGGTTCTGATAATATTTGACGCGTATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34765</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>12863</contig_pos>
        <strand>+</strand>
        <context>GCGTATTCAT[A/T]TGGTGCGGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTATTAACAATAGTTCTGCTGGTTCTGATAATATTTGACGCGTATTCAT</left_flank>
        <right_flank>TGGTGCGGTTCCTTTTTCATTTGAATAGAAAGAAAATTGAGAATCTTAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCCGAAACTGAGTGTTTGAATCTGGTCTGTTGCAATCTAATGCTCTTTATTCTCAACTTCTTGTTTCGAATTTTTTTTCACGTTCTCAGTTCACTTGTCTTTCTCTGATTTGTCATAACATTAGCAATACAAAGTTCTCGTCACTTGCTGGAAACGTTCACTGTTTGTACATCACAGAAAACTCATATAGAACACCAACGACAGATAGAAACATTCATATGCATAGAAGCAGTACCAAAACCATACACAATTCAGATGACTCATTTCTTAATAAAAAAGTGCACATTCATTGTTCAAGCACCTCCCACCGGTACCACCGCCAGTAGAGTCTTTTGTCACAAAACCAACTGATAGTTTTATTTGTACCAAACTCTTTCTTGTTCCCGTTTTTGCACAATTCTCCAACTACCATGAAGGCACTCGGAATTTTGCTACAACCTCTTACTATATTATTAACAATAGTTCTGCTGGTTCTGATAATATTTGACGCGTATTCATTTGGTGCGGTTCCTTTTTCATTTGAATAGAAAGAAAATTGAGAATCTTAAGCATGGACAACTGACGATTCGGGGATTTATACCAACAATGGAATCAGCCTATCTGCGTGTACACCTTGGAATATTTTGGGATGTCCAAATCTTTGGAATGTGAGTTGAAATGTATTTTTCCGTTTTCAATAATCTGTTTGTCATTTTTTGCGTTTTTGGTGAGTAAGAAAGGATTCTAGCAAAAAATTCGAATTTTGAACAGTTCTAAAGACTCCGGAATTCTGAAGTTTTCTGAATTGCAAATTATTTTGAAATTTTGTAATTCTAAAAATTAGAAACTCGGAACTTTTGACATTCCGAAAATTCCAAAAAAAGCCTTTCCAAATCCCTGAATTCGTCTGTGGCATATAGTAAATGCTTTATTAGAACGTCATCCTATATTCTCACTTTGAGCTGCATTATCTGTGTTCCTATGAGAGATTTTGAAATCCTGTCAACTGATAAAACGTTT</canonical>
            <polymorphic>TGCCGAAACTGAGTGTTTGAATCTGGTCTGTTGCAATCTAATGCTCTTTATTCTCAACTTCTTGTTTCGAATTTTTTTTCACGTTCTCAGTTCACTTGTCTTTCTCTGATTTGTCATAACATTAGCAATACAAAGTTCTCGTCACTTGCTGGAAACGTTCACTGTTTGTACATCACAGAAAACTCATATAGAACACCAACGACAGATAGAAACATTCATATGCATAGAAGCAGTACCAAAACCATACACAATTCAGATGACTCATTTCTTAATAAAAAAGTGCACATTCATTGTTCAAGCACCTCCCACCGGTACCACCGCCAGTAGAGTCTTTTGTCACAAAACCAACTGATAGTTTTATTTGTACCAAACTCTTTCTTGTTCCCGTTTTTGCACAATTCTCCAACTACCATGAAGGCACTCGGAATTTTGCTACAACCTCTTACTATATTATTAACAATAGTTCTGCTGGTTCTGATAATATTTGACGCGTATTCATWTGGTGCGGTTCCTTTTTCATTTGAATAGAAAGAAAATTGAGAATCTTAAGCATGGACAACTGACGATTCGGGGATTTATACCAACAATGGAATCAGCCTATCTGCGTGTACACCTTGGAATATTTTGGGATGTCCAAATCTTTGGAATGTGAGTTGAAATGTATTTTTCCGTTTTCAATAATCTGTTTGTCATTTTTTGCGTTTTTGGTGAGTAAGAAAGGATTCTAGCAAAAAATTCGAATTTTGAACAGTTCTAAAGACTCCGGAATTCTGAAGTTTTCTGAATTGCAAATTATTTTGAAATTTTGTAATTCTAAAAATTAGAAACTCGGAACTTTTGACATTCCGAAAATTCCAAAAAAAGCCTTTCCAAATCCCTGAATTCGTCTGTGGCATATAGTAAATGCTTTATTAGAACGTCATCCTATATTCTCACTTTGAGCTGCATTATCTGTGTTCCTATGAGAGATTTTGAAATCCTGTCAACTGATAAAACGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTACCAAACTCTTTCTTGTTC</pcr_primer_p1>
		<pcr_primer_p2>GTACACGCAGATAGGCTGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGTACCAAACTCTTTCTTGTTCCCGTTTTTGCACAATTCTCCAACTACCATGAAGGCACTCGGAATTTTGCTACAACCTCTTACTATATTATTAACAATAGTTCTGCTGGTTCTGATAATATTTGACGCGTATTCATTTGGTGCGGTTCCTTTTTCATTTGAATAGAAAGAAAATTGAGAATCTTAAGCATGGACAACTGACGATTCGGGGATTTATACCAACAATGGAATCAGCCTATCTGCGTGTAC</canonical_amplicon>
		<polymorphic_amplicon>TTGTACCAAACTCTTTCTTGTTCCCGTTTTTGCACAATTCTCCAACTACCATGAAGGCACTCGGAATTTTGCTACAACCTCTTACTATATTATTAACAATAGTTCTGCTGGTTCTGATAATATTTGACGCGTATTCATWTGGTGCGGTTCCTTTTTCATTTGAATAGAAAGAAAATTGAGAATCTTAAGCATGGACAACTGACGATTCGGGGATTTATACCAACAATGGAATCAGCCTATCTGCGTGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34766</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>66204</contig_pos>
        <strand>+</strand>
        <context>CATGGGACCA[A/G]AGCGCCTCGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTCGAGAGCTCATTCGAAGACCGCTGGATGTCCGTTGTACATGGGACCA</left_flank>
        <right_flank>AGCGCCTCGACCCGAACAATGATGACTCGTACGACATCAGAAGTGATGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGTTATCTGCATCTCTTTCGACTGTCCGTACATTGTCCGTTGTTACGGCTACTTCATCACTACGGTAAGCTAACTTCGAAGGCATTCTTCAACTACATAATCCAACTTATTTTCAGTACGACGTCCGTGTGTGTATGGAGTGTATGGCTACATGTCTTGATCGTCTGCTCGATCGCATCAAAAAGCCATTTCCAGAAAGAATTATCGGCAAGCTTAGCATCAGTATTATCAAGGCTCTGCATTACCTCAAAACAAAGCATGTAAGTGTCAAACATAAATACGTATTAGGGAGCACTTAAGCGAAAAAAGCTCATCAATCATCCTTACTAATCCGTTCTTATTGTTTCCAGCAAATCATGCATCGCGATGTCAAGCCATCCAACATCCTGCTCGATTGGAGTGGTGTCATCAAGCTCTGCGACTTTGGAATCGCTGGGCGCCTGATCGAGTCGAGAGCTCATTCGAAGACCGCTGGATGTCCGTTGTACATGGGACCAGAGCGCCTCGACCCGAACAATGATGACTCGTACGACATCAGAAGTGATGTGTGGTCGTTGGGACTCACGTTGGTCGAGTTGGCCACCGGACGCTACCCATTCGGTGGTTCGGAGTTCGAAATGATGTCCAAGATTATCCACGACGAACCACCACGTTTGGATCCCGTAAGTGAAAGGGTGTCTGAAATTAGATGGCTAGATGGCAGGAAAATAAAAATTATCTTACCAGGAAACATACCATTATTCTATTTTCAGACCATGTTCTCGGCTGAATTCTGCGACATCGTGACGTGCTGCCTCCAGCGTGACCCAACAAAACGCATGAACTACGACCAGCTTCTTCAGCACCCGTTCATCTTGAAGCACGAAGGGGTCGACACCGATGTTGAGGAGTGGTTTGCTGATGTCATGTGCGACAGCGAATAGGCATTGTTTGTTTTGTGATCCTTCCAATTGTGATACCAAAAACCGTCTCTTTCAAACACTTTCTAATTCTGGTCA</canonical>
            <polymorphic>GATGTTATCTGCATCTCTTTCGACTGTCCGTACATTGTCCGTTGTTACGGCTACTTCATCACTACGGTAAGCTAACTTCGAAGGCATTCTTCAACTACATAATCCAACTTATTTTCAGTACGACGTCCGTGTGTGTATGGAGTGTATGGCTACATGTCTTGATCGTCTGCTCGATCGCATCAAAAAGCCATTTCCAGAAAGAATTATCGGCAAGCTTAGCATCAGTATTATCAAGGCTCTGCATTACCTCAAAACAAAGCATGTAAGTGTCAAACATAAATACGTATTAGGGAGCACTTAAGCGAAAAAAGCTCATCAATCATCCTTACTAATCCGTTCTTATTGTTTCCAGCAAATCATGCATCGCGATGTCAAGCCATCCAACATCCTGCTCGATTGGAGTGGTGTCATCAAGCTCTGCGACTTTGGAATCGCTGGGCGCCTGATCGAGTCGAGAGCTCATTCGAAGACCGCTGGATGTCCGTTGTACATGGGACCARAGCGCCTCGACCCGAACAATGATGACTCGTACGACATCAGAAGTGATGTGTGGTCGTTGGGACTCACGTTGGTCGAGTTGGCCACCGGACGCTACCCATTCGGTGGTTCGGAGTTCGAAATGATGTCCAAGATTATCCACGACGAACCACCACGTTTGGATCCCGTAAGTGAAAGGGTGTCTGAAATTAGATGGCTAGATGGCAGGAAAATAAAAATTATCTTACCAGGAAACATACCATTATTCTATTTTCAGACCATGTTCTCGGCTGAATTCTGCGACATCGTGACGTGCTGCCTCCAGCGTGACCCAACAAAACGCATGAACTACGACCAGCTTCTTCAGCACCCGTTCATCTTGAAGCACGAAGGGGTCGACACCGATGTTGAGGAGTGGTTTGCTGATGTCATGTGCGACAGCGAATAGGCATTGTTTGTTTTGTGATCCTTCCAATTGTGATACCAAAAACCGTCTCTTTCAAACACTTTCTAATTCTGGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCTCATCAATCATCCTTACTA</pcr_primer_p1>
		<pcr_primer_p2>AACGACCACACATCACTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGCTCATCAATCATCCTTACTAATCCGTTCTTATTGTTTCCAGCAAATCATGCATCGCGATGTCAAGCCATCCAACATCCTGCTCGATTGGAGTGGTGTCATCAAGCTCTGCGACTTTGGAATCGCTGGGCGCCTGATCGAGTCGAGAGCTCATTCGAAGACCGCTGGATGTCCGTTGTACATGGGACCAGAGCGCCTCGACCCGAACAATGATGACTCGTACGACATCAGAAGTGATGTGTGGTCGTT</canonical_amplicon>
		<polymorphic_amplicon>AAGCTCATCAATCATCCTTACTAATCCGTTCTTATTGTTTCCAGCAAATCATGCATCGCGATGTCAAGCCATCCAACATCCTGCTCGATTGGAGTGGTGTCATCAAGCTCTGCGACTTTGGAATCGCTGGGCGCCTGATCGAGTCGAGAGCTCATTCGAAGACCGCTGGATGTCCGTTGTACATGGGACCARAGCGCCTCGACCCGAACAATGATGACTCGTACGACATCAGAAGTGATGTGTGGTCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34767</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>75261</contig_pos>
        <strand>+</strand>
        <context>GGCGCTCTTT[G/T]GGAGTGGCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGCGTCCATGGCTATGTTAATTGCGTTAACTCATTCAATGGGCGCTCTTT</left_flank>
        <right_flank>GGAGTGGCACAATGCGCAACAAACTATTGCAAAAAGTATACGGGGGGCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGTCCACATACCAGAAACCGTCAGAACTTGCCAATTATGTTTATGACTCAGATTGGGACAAACAAAATCGCTTTGTAGAGTTTGAAGCCTACTACTGTACCACTAAAAAGTTGGTTTTTCTTATTACAGTCTTTTCTAAAAATCTAATTTCAGGTACACTGGAAAATGTGATCCGCACAGTCTCGAGATGATTGCGTTTTTCAAGCGGAAAGGATGGAAGAAACGGCTGGATGATTGGGGCGAGATGATAGTTGTTTAGTGAACAAAACGAGGTAAAGGCACGCACATCGACAAATATATTGGAATGAATCATGTTATGGTCAGACGGGAAGAAGGGAAGAATACAAACAAGCTCCTCTCTTTTTACTCCATAGTTGTGAATCACACAAGCTATTTTTCATGAGCTCCAACATTCTTTTGGTTCTATTCTTATTTTTAATTACAAAAAGCGTCCATGGCTATGTTAATTGCGTTAACTCATTCAATGGGCGCTCTTTTGGAGTGGCACAATGCGCAACAAACTATTGCAAAAAGTATACGGGGGGCAGTGGAATTGTAAGTAGACGGAATAGTTAGTATGTCTGGGTCATTTCTATCAAAAATTTTGCAGGTTCAATTGTCATGCGACGATACGGGTGATTGTCAGCGCTCCTTCGAGAGAACATTTATCGGACCAGTCCAAATGTATGCTTGTATGTCGGACCAATCTACACGCCAAACTTGCTGTTGTAACTATGATTTCTGTAATGGTGCTTCTTCTTTAAAATCCCATAATATTTATTTAATTTCAATTTTTACGCTTCTAATTTATTCATTCCATGGCTTTCTTCCTCATTTGCCTCTGCTCTAGATTGTTTTTGCTTAGCTTTTGCATCTTTCAGTTTTTCCACAATATCATTGATATGCCTATCCTTGGTCTCCGGTAGATATAATATCAGCATTAGTATGCACACAGCTCCCGGTATCACAAAGAAAATGACCAATGTAATGGGACCTGA</canonical>
            <polymorphic>TGAGTCCACATACCAGAAACCGTCAGAACTTGCCAATTATGTTTATGACTCAGATTGGGACAAACAAAATCGCTTTGTAGAGTTTGAAGCCTACTACTGTACCACTAAAAAGTTGGTTTTTCTTATTACAGTCTTTTCTAAAAATCTAATTTCAGGTACACTGGAAAATGTGATCCGCACAGTCTCGAGATGATTGCGTTTTTCAAGCGGAAAGGATGGAAGAAACGGCTGGATGATTGGGGCGAGATGATAGTTGTTTAGTGAACAAAACGAGGTAAAGGCACGCACATCGACAAATATATTGGAATGAATCATGTTATGGTCAGACGGGAAGAAGGGAAGAATACAAACAAGCTCCTCTCTTTTTACTCCATAGTTGTGAATCACACAAGCTATTTTTCATGAGCTCCAACATTCTTTTGGTTCTATTCTTATTTTTAATTACAAAAAGCGTCCATGGCTATGTTAATTGCGTTAACTCATTCAATGGGCGCTCTTTKGGAGTGGCACAATGCGCAACAAACTATTGCAAAAAGTATACGGGGGGCAGTGGAATTGTAAGTAGACGGAATAGTTAGTATGTCTGGGTCATTTCTATCAAAAATTTTGCAGGTTCAATTGTCATGCGACGATACGGGTGATTGTCAGCGCTCCTTCGAGAGAACATTTATCGGACCAGTCCAAATGTATGCTTGTATGTCGGACCAATCTACACGCCAAACTTGCTGTTGTAACTATGATTTCTGTAATGGTGCTTCTTCTTTAAAATCCCATAATATTTATTTAATTTCAATTTTTACGCTTCTAATTTATTCATTCCATGGCTTTCTTCCTCATTTGCCTCTGCTCTAGATTGTTTTTGCTTAGCTTTTGCATCTTTCAGTTTTTCCACAATATCATTGATATGCCTATCCTTGGTCTCCGGTAGATATAATATCAGCATTAGTATGCACACAGCTCCCGGTATCACAAAGAAAATGACCAATGTAATGGGACCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTCCTCTCTTTTTACTCCATA</pcr_primer_p1>
		<pcr_primer_p2>TGATAGAAATGACCCAGACATAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGCTCCTCTCTTTTTACTCCATAGTTGTGAATCACACAAGCTATTTTTCATGAGCTCCAACATTCTTTTGGTTCTATTCTTATTTTTAATTACAAAAAGCGTCCATGGCTATGTTAATTGCGTTAACTCATTCAATGGGCGCTCTTTTGGAGTGGCACAATGCGCAACAAACTATTGCAAAAAGTATACGGGGGGCAGTGGAATTGTAAGTAGACGGAATAGTTAGTATGTCTGGGTCATTTCTATCA</canonical_amplicon>
		<polymorphic_amplicon>AGCTCCTCTCTTTTTACTCCATAGTTGTGAATCACACAAGCTATTTTTCATGAGCTCCAACATTCTTTTGGTTCTATTCTTATTTTTAATTACAAAAAGCGTCCATGGCTATGTTAATTGCGTTAACTCATTCAATGGGCGCTCTTTKGGAGTGGCACAATGCGCAACAAACTATTGCAAAAAGTATACGGGGGGCAGTGGAATTGTAAGTAGACGGAATAGTTAGTATGTCTGGGTCATTTCTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34768</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>100745</contig_pos>
        <strand>+</strand>
        <context>tatACAAACT[C/T]TGAACCTAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGGTCAAAAATAGCCGAAAATCCACTGATCAGTACTGTATATACAAACT</left_flank>
        <right_flank>TGAACCTAAAAAGAGGGACTGAAATTGGATAATTAGATATACAAATTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTGGTGGAACAATGGAGTCTTCTGGCCGGACAGGCGGACGATTTACAATCCCGACCAGGAAGCTGTGTTATTTGATATGCGAACACTTCTGGTCAATGGGTGGAGCTTTGCGAAGCGTGTCAGTCGGCTTTTTGCGGTAAAAAGAACTGTTTATAATAAATCATCAAAAGTTTTACAATGATCGGTTATCTAATCGGTCATCTGAAGAAATGCATTTTATCTGATTTTGCTCTCGGCTAGTATAACGATTCATATCAATTTTTGGCCCATTTTTGTACTGAAAAAGTGTAAAAAACAAGTGTCTTCCAGAAATCGGCAAATAGCTCAAAAACTACGAAGTTTCGAAAAAATTCATAAATGCAAAGTTCTCAATCTAGGTCTATTTTACACCCCACAAAATATTCAAAGTAGTCGGAAACCTGACAGTCGAGTTCCAGATTTTTGAAAATGGTCAAAAATAGCCGAAAATCCACTGATCAGTACTGTATATACAAACTCTGAACCTAAAAAGAGGGACTGAAATTGGATAATTAGATATACAAATTATTTATTCAGAAATATAAACAAAAATAATTATTGTAATTTAATAAAAATAATTATTGTAATTATCCATTTTGGAATAAAAAACTGAATAAACTCAGCTTGAAAAAGGTCACATGAAAAAGGAATTACATAAGGTAGAAGAAGGGGGATACAAAGAAGACGACGAAAATAAAAATATCAAGGTCCAAGGGCTACTGAAAAAATTTTTATGTTATATTAAAGGAAAACAAGAAATAATAAGACGAATCTGTTGGGTGGCGGCGGGGAAAAAATAATGCTTACAAGTGGACGAATCACCTATACAGCAGAGAAAAGTGTCTTTTAATACCTATAAAACTGTTTTCAAACCTGCTTAAGAATTCTCGAATTTGCTAAAATTTCAGTAGAAAATGGGCAATTTTCCAATTGGATTTTCTCCACTTTTAGGAGGTCTTAGGACTTGAAATTTTTTTCGG</canonical>
            <polymorphic>ATCTGGTGGAACAATGGAGTCTTCTGGCCGGACAGGCGGACGATTTACAATCCCGACCAGGAAGCTGTGTTATTTGATATGCGAACACTTCTGGTCAATGGGTGGAGCTTTGCGAAGCGTGTCAGTCGGCTTTTTGCGGTAAAAAGAACTGTTTATAATAAATCATCAAAAGTTTTACAATGATCGGTTATCTAATCGGTCATCTGAAGAAATGCATTTTATCTGATTTTGCTCTCGGCTAGTATAACGATTCATATCAATTTTTGGCCCATTTTTGTACTGAAAAAGTGTAAAAAACAAGTGTCTTCCAGAAATCGGCAAATAGCTCAAAAACTACGAAGTTTCGAAAAAATTCATAAATGCAAAGTTCTCAATCTAGGTCTATTTTACACCCCACAAAATATTCAAAGTAGTCGGAAACCTGACAGTCGAGTTCCAGATTTTTGAAAATGGTCAAAAATAGCCGAAAATCCACTGATCAGTACTGTATATACAAACTYTGAACCTAAAAAGAGGGACTGAAATTGGATAATTAGATATACAAATTATTTATTCAGAAATATAAACAAAAATAATTATTGTAATTTAATAAAAATAATTATTGTAATTATCCATTTTGGAATAAAAAACTGAATAAACTCAGCTTGAAAAAGGTCACATGAAAAAGGAATTACATAAGGTAGAAGAAGGGGGATACAAAGAAGACGACGAAAATAAAAATATCAAGGTCCAAGGGCTACTGAAAAAATTTTTATGTTATATTAAAGGAAAACAAGAAATAATAAGACGAATCTGTTGGGTGGCGGCGGGGAAAAAATAATGCTTACAAGTGGACGAATCACCTATACAGCAGAGAAAAGTGTCTTTTAATACCTATAAAACTGTTTTCAAACCTGCTTAAGAATTCTCGAATTTGCTAAAATTTCAGTAGAAAATGGGCAATTTTCCAATTGGATTTTCTCCACTTTTAGGAGGTCTTAGGACTTGAAATTTTTTTCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>444 205 192 85 55 19</canonical_bands>
                <polymorphic_bands>444 205 192 140 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGCTAGTATAACGATTCATATC</pcr_primer_p1>
		<pcr_primer_p2>ACCTTTTTCAAGCTGAGTTTATT</pcr_primer_p2>
		<pcr_amplicon_size>420</pcr_amplicon_size>
		<canonical_amplicon>CGGCTAGTATAACGATTCATATCAATTTTTGGCCCATTTTTGTACTGAAAAAGTGTAAAAAACAAGTGTCTTCCAGAAATCGGCAAATAGCTCAAAAACTACGAAGTTTCGAAAAAATTCATAAATGCAAAGTTCTCAATCTAGGTCTATTTTACACCCCACAAAATATTCAAAGTAGTCGGAAACCTGACAGTCGAGTTCCAGATTTTTGAAAATGGTCAAAAATAGCCGAAAATCCACTGATCAGTACTGTATATACAAACTCTGAACCTAAAAAGAGGGACTGAAATTGGATAATTAGATATACAAATTATTTATTCAGAAATATAAACAAAAATAATTATTGTAATTTAATAAAAATAATTATTGTAATTATCCATTTTGGAATAAAAAACTGAATAAACTCAGCTTGAAAAAGGT</canonical_amplicon>
		<polymorphic_amplicon>CGGCTAGTATAACGATTCATATCAATTTTTGGCCCATTTTTGTACTGAAAAAGTGTAAAAAACAAGTGTCTTCCAGAAATCGGCAAATAGCTCAAAAACTACGAAGTTTCGAAAAAATTCATAAATGCAAAGTTCTCAATCTAGGTCTATTTTACACCCCACAAAATATTCAAAGTAGTCGGAAACCTGACAGTCGAGTTCCAGATTTTTGAAAATGGTCAAAAATAGCCGAAAATCCACTGATCAGTACTGTATATACAAACTYTGAACCTAAAAAGAGGGACTGAAATTGGATAATTAGATATACAAATTATTTATTCAGAAATATAAACAAAAATAATTATTGTAATTTAATAAAAATAATTATTGTAATTATCCATTTTGGAATAAAAAACTGAATAAACTCAGCTTGAAAAAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34769</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>100835</contig_pos>
        <strand></strand>
        <context>tgtaatttaa[T/C]aaaaataaty</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TACAAATTATTTATTCAGAAATATAAACAAAAATAATTATTGTAATTTAA</left_flank>
        <right_flank>AAAAATAATTATTGTAATTATCCATTTTGGAATAAAAAACTGAATAAACT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGTCAATGGGTGGAGCTTTGCGAAGCGTGTCAGTCGGCTTTTTGCGGTAAAAAGAACTGTTTATAATAAATCATCAAAAGTTTTACAATGATCGGTTATCTAATCGGTCATCTGAAGAAATGCATTTTATCTGATTTTGCTCTCGGCTAGTATAACGATTCATATCAATTTTTGGCCCATTTTTGTACTGAAAAAGTGTAAAAAACAAGTGTCTTCCAGAAATCGGCAAATAGCTCAAAAACTACGAAGTTTCGAAAAAATTCATAAATGCAAAGTTCTCAATCTAGGTCTATTTTACACCCCACAAAATATTCAAAGTAGTCGGAAACCTGACAGTCGAGTTCCAGATTTTTGAAAATGGTCAAAAATAGCCGAAAATCCACTGATCAGTACTGTATATACAAACTCTGAACCTAAAAAGAGGGACTGAAATTGGATAATTAGATATACAAATTATTTATTCAGAAATATAAACAAAAATAATTATTGTAATTTAATAAAAATAATTATTGTAATTATCCATTTTGGAATAAAAAACTGAATAAACTCAGCTTGAAAAAGGTCACATGAAAAAGGAATTACATAAGGTAGAAGAAGGGGGATACAAAGAAGACGACGAAAATAAAAATATCAAGGTCCAAGGGCTACTGAAAAAATTTTTATGTTATATTAAAGGAAAACAAGAAATAATAAGACGAATCTGTTGGGTGGCGGCGGGGAAAAAATAATGCTTACAAGTGGACGAATCACCTATACAGCAGAGAAAAGTGTCTTTTAATACCTATAAAACTGTTTTCAAACCTGCTTAAGAATTCTCGAATTTGCTAAAATTTCAGTAGAAAATGGGCAATTTTCCAATTGGATTTTCTCCACTTTTAGGAGGTCTTAGGACTTGAAATTTTTTTCGGTATATTTAAAATTATGTGGGATTTTTATTTCACTTGATTTCCATGAAAAAAAACTCCGGGAAAATTATGGAAAATTTCAAAACTTGGCAA</canonical>
            <polymorphic>CTGGTCAATGGGTGGAGCTTTGCGAAGCGTGTCAGTCGGCTTTTTGCGGTAAAAAGAACTGTTTATAATAAATCATCAAAAGTTTTACAATGATCGGTTATCTAATCGGTCATCTGAAGAAATGCATTTTATCTGATTTTGCTCTCGGCTAGTATAACGATTCATATCAATTTTTGGCCCATTTTTGTACTGAAAAAGTGTAAAAAACAAGTGTCTTCCAGAAATCGGCAAATAGCTCAAAAACTACGAAGTTTCGAAAAAATTCATAAATGCAAAGTTCTCAATCTAGGTCTATTTTACACCCCACAAAATATTCAAAGTAGTCGGAAACCTGACAGTCGAGTTCCAGATTTTTGAAAATGGTCAAAAATAGCCGAAAATCCACTGATCAGTACTGTATATACAAACTCTGAACCTAAAAAGAGGGACTGAAATTGGATAATTAGATATACAAATTATTTATTCAGAAATATAAACAAAAATAATTATTGTAATTTAAYAAAAATAATTATTGTAATTATCCATTTTGGAATAAAAAACTGAATAAACTCAGCTTGAAAAAGGTCACATGAAAAAGGAATTACATAAGGTAGAAGAAGGGGGATACAAAGAAGACGACGAAAATAAAAATATCAAGGTCCAAGGGCTACTGAAAAAATTTTTATGTTATATTAAAGGAAAACAAGAAATAATAAGACGAATCTGTTGGGTGGCGGCGGGGAAAAAATAATGCTTACAAGTGGACGAATCACCTATACAGCAGAGAAAAGTGTCTTTTAATACCTATAAAACTGTTTTCAAACCTGCTTAAGAATTCTCGAATTTGCTAAAATTTCAGTAGAAAATGGGCAATTTTCCAATTGGATTTTCTCCACTTTTAGGAGGTCTTAGGACTTGAAATTTTTTTCGGTATATTTAAAATTATGTGGGATTTTTATTTCACTTGATTTCCATGAAAAAAAACTCCGGGAAAATTATGGAAAATTTCAAAACTTGGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTAAAAAGAGGGACTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCTTGGACCTTGATATTTTTATT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ACCTAAAAAGAGGGACTGAAATTGGATAATTAGATATACAAATTATTTATTCAGAAATATAAACAAAAATAATTATTGTAATTTAATAAAAATAATTATTGTAATTATCCATTTTGGAATAAAAAACTGAATAAACTCAGCTTGAAAAAGGTCACATGAAAAAGGAATTACATAAGGTAGAAGAAGGGGGATACAAAGAAGACGACGAAAATAAAAATATCAAGGTCCAAGG</canonical_amplicon>
		<polymorphic_amplicon>ACCTAAAAAGAGGGACTGAAATTGGATAATTAGATATACAAATTATTTATTCAGAAATATAAACAAAAATAATTATTGTAATTTAAYAAAAATAATTATTGTAATTATCCATTTTGGAATAAAAAACTGAATAAACTCAGCTTGAAAAAGGTCACATGAAAAAGGAATTACATAAGGTAGAAGAAGGGGGATACAAAGAAGACGACGAAAATAAAAATATCAAGGTCCAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34770</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>100845</contig_pos>
        <strand></strand>
        <context>yaaaaataat[T/C]attgtaatta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTATTCAGAAATATAAACAAAAATAATTATTGTAATTTAATAAAAATAAT</left_flank>
        <right_flank>ATTGTAATTATCCATTTTGGAATAAAAAACTGAATAAACTCAGCTTGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTGGAGCTTTGCGAAGCGTGTCAGTCGGCTTTTTGCGGTAAAAAGAACTGTTTATAATAAATCATCAAAAGTTTTACAATGATCGGTTATCTAATCGGTCATCTGAAGAAATGCATTTTATCTGATTTTGCTCTCGGCTAGTATAACGATTCATATCAATTTTTGGCCCATTTTTGTACTGAAAAAGTGTAAAAAACAAGTGTCTTCCAGAAATCGGCAAATAGCTCAAAAACTACGAAGTTTCGAAAAAATTCATAAATGCAAAGTTCTCAATCTAGGTCTATTTTACACCCCACAAAATATTCAAAGTAGTCGGAAACCTGACAGTCGAGTTCCAGATTTTTGAAAATGGTCAAAAATAGCCGAAAATCCACTGATCAGTACTGTATATACAAACTCTGAACCTAAAAAGAGGGACTGAAATTGGATAATTAGATATACAAATTATTTATTCAGAAATATAAACAAAAATAATTATTGTAATTTAATAAAAATAATTATTGTAATTATCCATTTTGGAATAAAAAACTGAATAAACTCAGCTTGAAAAAGGTCACATGAAAAAGGAATTACATAAGGTAGAAGAAGGGGGATACAAAGAAGACGACGAAAATAAAAATATCAAGGTCCAAGGGCTACTGAAAAAATTTTTATGTTATATTAAAGGAAAACAAGAAATAATAAGACGAATCTGTTGGGTGGCGGCGGGGAAAAAATAATGCTTACAAGTGGACGAATCACCTATACAGCAGAGAAAAGTGTCTTTTAATACCTATAAAACTGTTTTCAAACCTGCTTAAGAATTCTCGAATTTGCTAAAATTTCAGTAGAAAATGGGCAATTTTCCAATTGGATTTTCTCCACTTTTAGGAGGTCTTAGGACTTGAAATTTTTTTCGGTATATTTAAAATTATGTGGGATTTTTATTTCACTTGATTTCCATGAAAAAAAACTCCGGGAAAATTATGGAAAATTTCAAAACTTGGCAACACTTTGGGT</canonical>
            <polymorphic>GGTGGAGCTTTGCGAAGCGTGTCAGTCGGCTTTTTGCGGTAAAAAGAACTGTTTATAATAAATCATCAAAAGTTTTACAATGATCGGTTATCTAATCGGTCATCTGAAGAAATGCATTTTATCTGATTTTGCTCTCGGCTAGTATAACGATTCATATCAATTTTTGGCCCATTTTTGTACTGAAAAAGTGTAAAAAACAAGTGTCTTCCAGAAATCGGCAAATAGCTCAAAAACTACGAAGTTTCGAAAAAATTCATAAATGCAAAGTTCTCAATCTAGGTCTATTTTACACCCCACAAAATATTCAAAGTAGTCGGAAACCTGACAGTCGAGTTCCAGATTTTTGAAAATGGTCAAAAATAGCCGAAAATCCACTGATCAGTACTGTATATACAAACTCTGAACCTAAAAAGAGGGACTGAAATTGGATAATTAGATATACAAATTATTTATTCAGAAATATAAACAAAAATAATTATTGTAATTTAATAAAAATAATYATTGTAATTATCCATTTTGGAATAAAAAACTGAATAAACTCAGCTTGAAAAAGGTCACATGAAAAAGGAATTACATAAGGTAGAAGAAGGGGGATACAAAGAAGACGACGAAAATAAAAATATCAAGGTCCAAGGGCTACTGAAAAAATTTTTATGTTATATTAAAGGAAAACAAGAAATAATAAGACGAATCTGTTGGGTGGCGGCGGGGAAAAAATAATGCTTACAAGTGGACGAATCACCTATACAGCAGAGAAAAGTGTCTTTTAATACCTATAAAACTGTTTTCAAACCTGCTTAAGAATTCTCGAATTTGCTAAAATTTCAGTAGAAAATGGGCAATTTTCCAATTGGATTTTCTCCACTTTTAGGAGGTCTTAGGACTTGAAATTTTTTTCGGTATATTTAAAATTATGTGGGATTTTTATTTCACTTGATTTCCATGAAAAAAAACTCCGGGAAAATTATGGAAAATTTCAAAACTTGGCAACACTTTGGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>172 158 156 92 78 63 53 40 30 28 21 20 14 13 10 10 9 9 8 8 8</canonical_bands>
                <polymorphic_bands>172 158 156 92 78 63 53 40 30 28 23 21 20 13 10 10 9 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCTAAAAAGAGGGACTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCTTGGACCTTGATATTTTTATT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ACCTAAAAAGAGGGACTGAAATTGGATAATTAGATATACAAATTATTTATTCAGAAATATAAACAAAAATAATTATTGTAATTTAATAAAAATAATTATTGTAATTATCCATTTTGGAATAAAAAACTGAATAAACTCAGCTTGAAAAAGGTCACATGAAAAAGGAATTACATAAGGTAGAAGAAGGGGGATACAAAGAAGACGACGAAAATAAAAATATCAAGGTCCAAGG</canonical_amplicon>
		<polymorphic_amplicon>ACCTAAAAAGAGGGACTGAAATTGGATAATTAGATATACAAATTATTTATTCAGAAATATAAACAAAAATAATTATTGTAATTTAATAAAAATAATYATTGTAATTATCCATTTTGGAATAAAAAACTGAATAAACTCAGCTTGAAAAAGGTCACATGAAAAAGGAATTACATAAGGTAGAAGAAGGGGGATACAAAGAAGACGACGAAAATAAAAATATCAAGGTCCAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34771</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>157747</contig_pos>
        <strand>+</strand>
        <context>TTCGCGCCTG[A/G]AAAAATAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATCTCCAGCACGATCTTCTCCGTTTGCACTTGATTCTTTTCGCGCCTG</left_flank>
        <right_flank>AAAAATAAGAAAAACTTTTTTTTGTTTTACTGCAAACTTTTCAACCACAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTGTAAATCATAAATGCTCGGCATACTGCTACTCTTTCTCGCCGTTTTTCCATCTTCCAGAAAGTTCGAGTCCACGGAGCCACAGCCAGTCTTCTTTCGAACGGTCCGGCTAGAACTCACGCTTCGCATTATGAAAAATTGATATGATAGCTACAACTGTTGGGCAATGCACAATGGGGGTTATAGACCCCTGGAGGTTAGATATTCATGCGAGATGTTTTGTGCTGCTTTTGTGTGAAAGGAGAAAGAGGTGTGAAATGGAAAAATTAGATTTCGTTGAAAAAAAAAACTGCCGTCAAAGGATAGTTGTTCAGAATAAAATATAAGTCTGGAGTTATGAACTAGAAAGAAAGAAAACTAAAAAGGTGACGCAAGACATATCTTGTTTTAGAGATGCTGAAATGACGTAAAACTGCAAAAATACCTTCTTTTCGGTCTGAACTGGGAAGAATCTCCAGCACGATCTTCTCCGTTTGCACTTGATTCTTTTCGCGCCTGGAAAAATAAGAAAAACTTTTTTTTGTTTTACTGCAAACTTTTCAACCACATCTATAACTAGTCAGGAATGTTCAGAATGACCTATACTGAATTTCGGGAAATTCGAGAAATCCAATTTTCAAAATTTCGGAGTTTCCCGATTTTGAAAAAGTCGGGGAATTCCAATTTGGAAAAATTCATAATTTTGAAAGTTTCAAAACTGTTCAATATTCAAATTTTAAAATAGAAATCCTATTTTTCCTATTAAAAAGAGCCAAAAAATTATGACAAATTGACAAAAAAATTTCGGAACGAACAAAAAATTCAAGTGAATCTTCATAAGACCCGGCCGGAATATCATTCCAAACGTTTTCGAAATTTCCTGAATTCCAATTTTGGTTTCCAACATCCCTGCTGAATAGTGCAATAAATAAAGTATAGTAATCTTCCAAAATTTTTTGAAATTCTGAGATAAATCCTTATTTCAAAGTTTGTAAAGTTACGAATAACCTAGAACATACA</canonical>
            <polymorphic>GTTGTAAATCATAAATGCTCGGCATACTGCTACTCTTTCTCGCCGTTTTTCCATCTTCCAGAAAGTTCGAGTCCACGGAGCCACAGCCAGTCTTCTTTCGAACGGTCCGGCTAGAACTCACGCTTCGCATTATGAAAAATTGATATGATAGCTACAACTGTTGGGCAATGCACAATGGGGGTTATAGACCCCTGGAGGTTAGATATTCATGCGAGATGTTTTGTGCTGCTTTTGTGTGAAAGGAGAAAGAGGTGTGAAATGGAAAAATTAGATTTCGTTGAAAAAAAAAACTGCCGTCAAAGGATAGTTGTTCAGAATAAAATATAAGTCTGGAGTTATGAACTAGAAAGAAAGAAAACTAAAAAGGTGACGCAAGACATATCTTGTTTTAGAGATGCTGAAATGACGTAAAACTGCAAAAATACCTTCTTTTCGGTCTGAACTGGGAAGAATCTCCAGCACGATCTTCTCCGTTTGCACTTGATTCTTTTCGCGCCTGRAAAAATAAGAAAAACTTTTTTTTGTTTTACTGCAAACTTTTCAACCACATCTATAACTAGTCAGGAATGTTCAGAATGACCTATACTGAATTTCGGGAAATTCGAGAAATCCAATTTTCAAAATTTCGGAGTTTCCCGATTTTGAAAAAGTCGGGGAATTCCAATTTGGAAAAATTCATAATTTTGAAAGTTTCAAAACTGTTCAATATTCAAATTTTAAAATAGAAATCCTATTTTTCCTATTAAAAAGAGCCAAAAAATTATGACAAATTGACAAAAAAATTTCGGAACGAACAAAAAATTCAAGTGAATCTTCATAAGACCCGGCCGGAATATCATTCCAAACGTTTTCGAAATTTCCTGAATTCCAATTTTGGTTTCCAACATCCCTGCTGAATAGTGCAATAAATAAAGTATAGTAATCTTCCAAAATTTTTTGAAATTCTGAGATAAATCCTTATTTCAAAGTTTGTAAAGTTACGAATAACCTAGAACATACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>327 305 192 176</canonical_bands>
                <polymorphic_bands>632 192 176</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>503 305 192</canonical_bands>
                <polymorphic_bands>808 192</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTGGAGTTATGAACTAGAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TTATAGATGTGGTTGAAAAGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>GTCTGGAGTTATGAACTAGAAAGAAAGAAAACTAAAAAGGTGACGCAAGACATATCTTGTTTTAGAGATGCTGAAATGACGTAAAACTGCAAAAATACCTTCTTTTCGGTCTGAACTGGGAAGAATCTCCAGCACGATCTTCTCCGTTTGCACTTGATTCTTTTCGCGCCTGGAAAAATAAGAAAAACTTTTTTTTGTTTTACTGCAAACTTTTCAACCACATCTATAA</canonical_amplicon>
		<polymorphic_amplicon>GTCTGGAGTTATGAACTAGAAAGAAAGAAAACTAAAAAGGTGACGCAAGACATATCTTGTTTTAGAGATGCTGAAATGACGTAAAACTGCAAAAATACCTTCTTTTCGGTCTGAACTGGGAAGAATCTCCAGCACGATCTTCTCCGTTTGCACTTGATTCTTTTCGCGCCTGRAAAAATAAGAAAAACTTTTTTTTGTTTTACTGCAAACTTTTCAACCACATCTATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34772</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>200685</contig_pos>
        <strand>+</strand>
        <context>ATTATTCGTA[A/T]YCTATCTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTGGAACTGGTTTTAAAATTTTTAGAAATGATAAGATAGATTATTCGTA</left_flank>
        <right_flank>TCTATCTTGAAGTTTACATCAAAATATAAGTTTATATGGTGTTCAGGTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATCCGTATTTGAACTTTGCATAATGTTTGCATTCAACTGGTAGTAGTAGTCCAGTGTAATATTAGCCGTCTCCCGGTCGGACGGTCGTCATTCACGGGTGGTCGAGATGAAGCATCGTCTTCAACTGGTTCCACAACTTTTTAAATGTCACTTGGTATGTGTCGGAATTGTGGACAAACAAAATTGATATTGAAGAAGGAAAAGAACGAATAAGTAGGAAAAAGAGAAAAAGACTGAAAGATGGAAACAATAATGGAAGATGATGATGTTCCATGAAATTATTTGCTTTGTTAGAAAAGGGTTCAAAATACAAAGTACAAACTTGGAAATTTGAAAATTTCGTAAATGATCAAAAACCTCTCTTTTTCAGATTCTAGAAATTTTCTAGAAGTTGAGAACATCGCTTTTGAAAACCGCGGTCTTTGCTAATGAAACTGATATAACTGTACTGGAACTGGTTTTAAAATTTTTAGAAATGATAAGATAGATTATTCGTAATCTATCTTGAAGTTTACATCAAAATATAAGTTTATATGGTGTTCAGGTTAGGTTGCGAATTTTGATTTTATACAAGTTTTCAGAACGCCTATCACGTAAAATTATAGTCTCCAACCTGCACAAAATATAATGTTTCAGATGAAGTGAGTTCAACATTACACAATGAAACTCCTAAAAAAATTATTGCAACAACCTCTCAGTTTTCGTTAAACTGAAATTGATTTTTAACATACAAGATACAGATATTCTTTTTCTCGTAATTCTGACTTTTTTGTCTCATCAGAATCGAACTCAGCAAAGAAGTTATCAATTAAAAATTAAAAAATAATTTTTTTTATTTTCCTTTTTTCAGAGCAATTTGAATATTATGGAATACATTTTCTAAACTCCGAAGCGAACTACCAAAAATGCTTGAAAGCCCATACTATACGTAAACTGGGGACTCAATTATCTCCGTTCTTTCGAAAGATATCAAATATGTGATAAAAGATAAAATATTC</canonical>
            <polymorphic>GTATCCGTATTTGAACTTTGCATAATGTTTGCATTCAACTGGTAGTAGTAGTCCAGTGTAATATTAGCCGTCTCCCGGTCGGACGGTCGTCATTCACGGGTGGTCGAGATGAAGCATCGTCTTCAACTGGTTCCACAACTTTTTAAATGTCACTTGGTATGTGTCGGAATTGTGGACAAACAAAATTGATATTGAAGAAGGAAAAGAACGAATAAGTAGGAAAAAGAGAAAAAGACTGAAAGATGGAAACAATAATGGAAGATGATGATGTTCCATGAAATTATTTGCTTTGTTAGAAAAGGGTTCAAAATACAAAGTACAAACTTGGAAATTTGAAAATTTCGTAAATGATCAAAAACCTCTCTTTTTCAGATTCTAGAAATTTTCTAGAAGTTGAGAACATCGCTTTTGAAAACCGCGGTCTTTGCTAATGAAACTGATATAACTGTACTGGAACTGGTTTTAAAATTTTTAGAAATGATAAGATAGATTATTCGTAWTCTATCTTGAAGTTTACATCAAAATATAAGTTTATATGGTGTTCAGGTTAGGTTGCGAATTTTGATTTTATACAAGTTTTCAGAACGCCTATCACGTAAAATTATAGTCTCCAACCTGCACAAAATATAATGTTTCAGATGAAGTGAGTTCAACATTACACAATGAAACTCCTAAAAAAATTATTGCAACAACCTCTCAGTTTTCGTTAAACTGAAATTGATTTTTAACATACAAGATACAGATATTCTTTTTCTCGTAATTCTGACTTTTTTGTCTCATCAGAATCGAACTCAGCAAAGAAGTTATCAATTAAAAATTAAAAAATAATTTTTTTTATTTTCCTTTTTTCAGAGCAATTTGAATATTATGGAATACATTTTCTAAACTCCGAAGCGAACTACCAAAAATGCTTGAAAGCCCATACTATACGTAAACTGGGGACTCAATTATCTCCGTTCTTTCGAAAGATATCAAATATGTGATAAAAGATAAAATATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCTTTGCTAATGAAACTGATA</pcr_primer_p1>
		<pcr_primer_p2>TTTCATTGTGTAATGTTGAACTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTCTTTGCTAATGAAACTGATATAACTGTACTGGAACTGGTTTTAAAATTTTTAGAAATGATAAGATAGATTATTCGTAATCTATCTTGAAGTTTACATCAAAATATAAGTTTATATGGTGTTCAGGTTAGGTTGCGAATTTTGATTTTATACAAGTTTTCAGAACGCCTATCACGTAAAATTATAGTCTCCAACCTGCACAAAATATAATGTTTCAGATGAAGTGAGTTCAACATTACACAATGAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTCTTTGCTAATGAAACTGATATAACTGTACTGGAACTGGTTTTAAAATTTTTAGAAATGATAAGATAGATTATTCGTAWTCTATCTTGAAGTTTACATCAAAATATAAGTTTATATGGTGTTCAGGTTAGGTTGCGAATTTTGATTTTATACAAGTTTTCAGAACGCCTATCACGTAAAATTATAGTCTCCAACCTGCACAAAATATAATGTTTCAGATGAAGTGAGTTCAACATTACACAATGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34773</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>200686</contig_pos>
        <strand>+</strand>
        <context>TTATTCGTAW[C/T]CTATCTTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGGAACTGGTTTTAAAATTTTTAGAAATGATAAGATAGATTATTCGTAA</left_flank>
        <right_flank>CTATCTTGAAGTTTACATCAAAATATAAGTTTATATGGTGTTCAGGTTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCCGTATTTGAACTTTGCATAATGTTTGCATTCAACTGGTAGTAGTAGTCCAGTGTAATATTAGCCGTCTCCCGGTCGGACGGTCGTCATTCACGGGTGGTCGAGATGAAGCATCGTCTTCAACTGGTTCCACAACTTTTTAAATGTCACTTGGTATGTGTCGGAATTGTGGACAAACAAAATTGATATTGAAGAAGGAAAAGAACGAATAAGTAGGAAAAAGAGAAAAAGACTGAAAGATGGAAACAATAATGGAAGATGATGATGTTCCATGAAATTATTTGCTTTGTTAGAAAAGGGTTCAAAATACAAAGTACAAACTTGGAAATTTGAAAATTTCGTAAATGATCAAAAACCTCTCTTTTTCAGATTCTAGAAATTTTCTAGAAGTTGAGAACATCGCTTTTGAAAACCGCGGTCTTTGCTAATGAAACTGATATAACTGTACTGGAACTGGTTTTAAAATTTTTAGAAATGATAAGATAGATTATTCGTAATCTATCTTGAAGTTTACATCAAAATATAAGTTTATATGGTGTTCAGGTTAGGTTGCGAATTTTGATTTTATACAAGTTTTCAGAACGCCTATCACGTAAAATTATAGTCTCCAACCTGCACAAAATATAATGTTTCAGATGAAGTGAGTTCAACATTACACAATGAAACTCCTAAAAAAATTATTGCAACAACCTCTCAGTTTTCGTTAAACTGAAATTGATTTTTAACATACAAGATACAGATATTCTTTTTCTCGTAATTCTGACTTTTTTGTCTCATCAGAATCGAACTCAGCAAAGAAGTTATCAATTAAAAATTAAAAAATAATTTTTTTTATTTTCCTTTTTTCAGAGCAATTTGAATATTATGGAATACATTTTCTAAACTCCGAAGCGAACTACCAAAAATGCTTGAAAGCCCATACTATACGTAAACTGGGGACTCAATTATCTCCGTTCTTTCGAAAGATATCAAATATGTGATAAAAGATAAAATATTCA</canonical>
            <polymorphic>TATCCGTATTTGAACTTTGCATAATGTTTGCATTCAACTGGTAGTAGTAGTCCAGTGTAATATTAGCCGTCTCCCGGTCGGACGGTCGTCATTCACGGGTGGTCGAGATGAAGCATCGTCTTCAACTGGTTCCACAACTTTTTAAATGTCACTTGGTATGTGTCGGAATTGTGGACAAACAAAATTGATATTGAAGAAGGAAAAGAACGAATAAGTAGGAAAAAGAGAAAAAGACTGAAAGATGGAAACAATAATGGAAGATGATGATGTTCCATGAAATTATTTGCTTTGTTAGAAAAGGGTTCAAAATACAAAGTACAAACTTGGAAATTTGAAAATTTCGTAAATGATCAAAAACCTCTCTTTTTCAGATTCTAGAAATTTTCTAGAAGTTGAGAACATCGCTTTTGAAAACCGCGGTCTTTGCTAATGAAACTGATATAACTGTACTGGAACTGGTTTTAAAATTTTTAGAAATGATAAGATAGATTATTCGTAAYCTATCTTGAAGTTTACATCAAAATATAAGTTTATATGGTGTTCAGGTTAGGTTGCGAATTTTGATTTTATACAAGTTTTCAGAACGCCTATCACGTAAAATTATAGTCTCCAACCTGCACAAAATATAATGTTTCAGATGAAGTGAGTTCAACATTACACAATGAAACTCCTAAAAAAATTATTGCAACAACCTCTCAGTTTTCGTTAAACTGAAATTGATTTTTAACATACAAGATACAGATATTCTTTTTCTCGTAATTCTGACTTTTTTGTCTCATCAGAATCGAACTCAGCAAAGAAGTTATCAATTAAAAATTAAAAAATAATTTTTTTTATTTTCCTTTTTTCAGAGCAATTTGAATATTATGGAATACATTTTCTAAACTCCGAAGCGAACTACCAAAAATGCTTGAAAGCCCATACTATACGTAAACTGGGGACTCAATTATCTCCGTTCTTTCGAAAGATATCAAATATGTGATAAAAGATAAAATATTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCTTTGCTAATGAAACTGATA</pcr_primer_p1>
		<pcr_primer_p2>TTTCATTGTGTAATGTTGAACTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTCTTTGCTAATGAAACTGATATAACTGTACTGGAACTGGTTTTAAAATTTTTAGAAATGATAAGATAGATTATTCGTAATCTATCTTGAAGTTTACATCAAAATATAAGTTTATATGGTGTTCAGGTTAGGTTGCGAATTTTGATTTTATACAAGTTTTCAGAACGCCTATCACGTAAAATTATAGTCTCCAACCTGCACAAAATATAATGTTTCAGATGAAGTGAGTTCAACATTACACAATGAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTCTTTGCTAATGAAACTGATATAACTGTACTGGAACTGGTTTTAAAATTTTTAGAAATGATAAGATAGATTATTCGTAAYCTATCTTGAAGTTTACATCAAAATATAAGTTTATATGGTGTTCAGGTTAGGTTGCGAATTTTGATTTTATACAAGTTTTCAGAACGCCTATCACGTAAAATTATAGTCTCCAACCTGCACAAAATATAATGTTTCAGATGAAGTGAGTTCAACATTACACAATGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34774</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>223766</contig_pos>
        <strand>+</strand>
        <context>AAATCTATGG[A/T]GCTTCTGTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAGCGTCTCGAGAATGAGCAAAAAAGTAGAGAATGACAAAATCTATGG</left_flank>
        <right_flank>GCTTCTGTCGACTAAGAATTGGATAAATAAAGCTCCATTGAAAAAAAGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAAGAATAGGCGCAGAAAATTGCCCCAGAAAAAATTCGACGGTCCTGATGGAGAGAGAGTGAGAGAGCAAGCGCGCACTGGGAAGCAATGAAAACGTCCCATTGAAGGGAGTGGAGGACTTGGAAGAGCTTTAAAAGAGCTTCTTGAAAGAATGAAGGCGCTTTGAAGCAAGAAAGTCTCTTGGAAAGTTGCTGAGCGGGAAATGTGCCTTTTGCGAAAATAGCATTTTTTGAAAAGAGAAAAGGACGGTTAGGAGCGCGAAATGAAAGCAGATACACTTTAGGTTAAGCGGAAAATAATTTTTAAAGCCAAGAAGAGAAAACGAAAAAGAAATAAATAAAAAATTATAGGCTTACACAAAACAATATGTTCGTAACTGTGAGAATTTGGATATAAGAAATCTTATTAGAAGTCATGGAAACATGAGCTTTTTTGAATAGAAAAAAAAGAAAGCGTCTCGAGAATGAGCAAAAAAGTAGAGAATGACAAAATCTATGGGGCTTCTGTCGACTAAGAATTGGATAAATAAAGCTCCATTGAAAAAAAGATTACATCCTTGGGAAATGAAAAAGGTCTTTTTGAAATAAAAAGACTGGTTTTTTCTACATCCGTCTCATGATAATATCTTTCCGAAAAAACAATCTGGTAAAAAATATATTTTGTACTAGTTTGCTATTACATTTTGCTATTCTGCTATTGTCGGACGACTAATTCGAAAAAAACTAATTCTCAAGGGACCTGTGTTATAATAATATATGTTGAGAACTCCGTGATTTTCAGTTGCAACAAATTATCTATTCTTGTTCCTTTCAGTTTTCTTCGAAGATATTAAGCATTCAAATAATACAATCAAACAGAATTAGAGACATTGACGGCTTATACTTCAACGTTACGACTACAGAAGCCGAACAACTTCATGCATGTTTCGGCACACTCAGCGACAACGGCGGCAACGAATCCGACTGGAAGACAGTACCAGCTGACTGTTGATGGTGTTGG</canonical>
            <polymorphic>GGAAGAATAGGCGCAGAAAATTGCCCCAGAAAAAATTCGACGGTCCTGATGGAGAGAGAGTGAGAGAGCAAGCGCGCACTGGGAAGCAATGAAAACGTCCCATTGAAGGGAGTGGAGGACTTGGAAGAGCTTTAAAAGAGCTTCTTGAAAGAATGAAGGCGCTTTGAAGCAAGAAAGTCTCTTGGAAAGTTGCTGAGCGGGAAATGTGCCTTTTGCGAAAATAGCATTTTTTGAAAAGAGAAAAGGACGGTTAGGAGCGCGAAATGAAAGCAGATACACTTTAGGTTAAGCGGAAAATAATTTTTAAAGCCAAGAAGAGAAAACGAAAAAGAAATAAATAAAAAATTATAGGCTTACACAAAACAATATGTTCGTAACTGTGAGAATTTGGATATAAGAAATCTTATTAGAAGTCATGGAAACATGAGCTTTTTTGAATAGAAAAAAAAGAAAGCGTCTCGAGAATGAGCAAAAAAGTAGAGAATGACAAAATCTATGGWGCTTCTGTCGACTAAGAATTGGATAAATAAAGCTCCATTGAAAAAAAGATTACATCCTTGGGAAATGAAAAAGGTCTTTTTGAAATAAAAAGACTGGTTTTTTCTACATCCGTCTCATGATAATATCTTTCCGAAAAAACAATCTGGTAAAAAATATATTTTGTACTAGTTTGCTATTACATTTTGCTATTCTGCTATTGTCGGACGACTAATTCGAAAAAAACTAATTCTCAAGGGACCTGTGTTATAATAATATATGTTGAGAACTCCGTGATTTTCAGTTGCAACAAATTATCTATTCTTGTTCCTTTCAGTTTTCTTCGAAGATATTAAGCATTCAAATAATACAATCAAACAGAATTAGAGACATTGACGGCTTATACTTCAACGTTACGACTACAGAAGCCGAACAACTTCATGCATGTTTCGGCACACTCAGCGACAACGGCGGCAACGAATCCGACTGGAAGACAGTACCAGCTGACTGTTGATGGTGTTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>344 169 129 76 75 73 43 31 29 20 11</canonical_bands>
                <polymorphic_bands>344 169 129 104 76 75 43 29 20 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTGAGAATTTGGATATAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTATCATGAGACGGATGTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTGTGAGAATTTGGATATAAGAAATCTTATTAGAAGTCATGGAAACATGAGCTTTTTTGAATAGAAAAAAAAGAAAGCGTCTCGAGAATGAGCAAAAAAGTAGAGAATGACAAAATCTATGGGGCTTCTGTCGACTAAGAATTGGATAAATAAAGCTCCATTGAAAAAAAGATTACATCCTTGGGAAATGAAAAAGGTCTTTTTGAAATAAAAAGACTGGTTTTTTCTACATCCGTCTCATGATAAT</canonical_amplicon>
		<polymorphic_amplicon>CTGTGAGAATTTGGATATAAGAAATCTTATTAGAAGTCATGGAAACATGAGCTTTTTTGAATAGAAAAAAAAGAAAGCGTCTCGAGAATGAGCAAAAAAGTAGAGAATGACAAAATCTATGGWGCTTCTGTCGACTAAGAATTGGATAAATAAAGCTCCATTGAAAAAAAGATTACATCCTTGGGAAATGAAAAAGGTCTTTTTGAAATAAAAAGACTGGTTTTTTCTACATCCGTCTCATGATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34775</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>223802</contig_pos>
        <strand>+</strand>
        <context>AATAAAGCTC[C/T]ATTGRAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACAAAATCTATGGGGCTTCTGTCGACTAAGAATTGGATAAATAAAGCTC</left_flank>
        <right_flank>ATTGAAAAAAAGATTACATCCTTGGGAAATGAAAAAGGTCTTTTTGAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGACGGTCCTGATGGAGAGAGAGTGAGAGAGCAAGCGCGCACTGGGAAGCAATGAAAACGTCCCATTGAAGGGAGTGGAGGACTTGGAAGAGCTTTAAAAGAGCTTCTTGAAAGAATGAAGGCGCTTTGAAGCAAGAAAGTCTCTTGGAAAGTTGCTGAGCGGGAAATGTGCCTTTTGCGAAAATAGCATTTTTTGAAAAGAGAAAAGGACGGTTAGGAGCGCGAAATGAAAGCAGATACACTTTAGGTTAAGCGGAAAATAATTTTTAAAGCCAAGAAGAGAAAACGAAAAAGAAATAAATAAAAAATTATAGGCTTACACAAAACAATATGTTCGTAACTGTGAGAATTTGGATATAAGAAATCTTATTAGAAGTCATGGAAACATGAGCTTTTTTGAATAGAAAAAAAAGAAAGCGTCTCGAGAATGAGCAAAAAAGTAGAGAATGACAAAATCTATGGGGCTTCTGTCGACTAAGAATTGGATAAATAAAGCTCCATTGAAAAAAAGATTACATCCTTGGGAAATGAAAAAGGTCTTTTTGAAATAAAAAGACTGGTTTTTTCTACATCCGTCTCATGATAATATCTTTCCGAAAAAACAATCTGGTAAAAAATATATTTTGTACTAGTTTGCTATTACATTTTGCTATTCTGCTATTGTCGGACGACTAATTCGAAAAAAACTAATTCTCAAGGGACCTGTGTTATAATAATATATGTTGAGAACTCCGTGATTTTCAGTTGCAACAAATTATCTATTCTTGTTCCTTTCAGTTTTCTTCGAAGATATTAAGCATTCAAATAATACAATCAAACAGAATTAGAGACATTGACGGCTTATACTTCAACGTTACGACTACAGAAGCCGAACAACTTCATGCATGTTTCGGCACACTCAGCGACAACGGCGGCAACGAATCCGACTGGAAGACAGTACCAGCTGACTGTTGATGGTGTTGGGTCCTCCAACTGAAACGTCTCGTATCTGGAAAAATT</canonical>
            <polymorphic>TCGACGGTCCTGATGGAGAGAGAGTGAGAGAGCAAGCGCGCACTGGGAAGCAATGAAAACGTCCCATTGAAGGGAGTGGAGGACTTGGAAGAGCTTTAAAAGAGCTTCTTGAAAGAATGAAGGCGCTTTGAAGCAAGAAAGTCTCTTGGAAAGTTGCTGAGCGGGAAATGTGCCTTTTGCGAAAATAGCATTTTTTGAAAAGAGAAAAGGACGGTTAGGAGCGCGAAATGAAAGCAGATACACTTTAGGTTAAGCGGAAAATAATTTTTAAAGCCAAGAAGAGAAAACGAAAAAGAAATAAATAAAAAATTATAGGCTTACACAAAACAATATGTTCGTAACTGTGAGAATTTGGATATAAGAAATCTTATTAGAAGTCATGGAAACATGAGCTTTTTTGAATAGAAAAAAAAGAAAGCGTCTCGAGAATGAGCAAAAAAGTAGAGAATGACAAAATCTATGGGGCTTCTGTCGACTAAGAATTGGATAAATAAAGCTCYATTGAAAAAAAGATTACATCCTTGGGAAATGAAAAAGGTCTTTTTGAAATAAAAAGACTGGTTTTTTCTACATCCGTCTCATGATAATATCTTTCCGAAAAAACAATCTGGTAAAAAATATATTTTGTACTAGTTTGCTATTACATTTTGCTATTCTGCTATTGTCGGACGACTAATTCGAAAAAAACTAATTCTCAAGGGACCTGTGTTATAATAATATATGTTGAGAACTCCGTGATTTTCAGTTGCAACAAATTATCTATTCTTGTTCCTTTCAGTTTTCTTCGAAGATATTAAGCATTCAAATAATACAATCAAACAGAATTAGAGACATTGACGGCTTATACTTCAACGTTACGACTACAGAAGCCGAACAACTTCATGCATGTTTCGGCACACTCAGCGACAACGGCGGCAACGAATCCGACTGGAAGACAGTACCAGCTGACTGTTGATGGTGTTGGGTCCTCCAACTGAAACGTCTCGTATCTGGAAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTGAGAATTTGGATATAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTATCATGAGACGGATGTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTGTGAGAATTTGGATATAAGAAATCTTATTAGAAGTCATGGAAACATGAGCTTTTTTGAATAGAAAAAAAAGAAAGCGTCTCGAGAATGAGCAAAAAAGTAGAGAATGACAAAATCTATGGGGCTTCTGTCGACTAAGAATTGGATAAATAAAGCTCCATTGAAAAAAAGATTACATCCTTGGGAAATGAAAAAGGTCTTTTTGAAATAAAAAGACTGGTTTTTTCTACATCCGTCTCATGATAAT</canonical_amplicon>
		<polymorphic_amplicon>CTGTGAGAATTTGGATATAAGAAATCTTATTAGAAGTCATGGAAACATGAGCTTTTTTGAATAGAAAAAAAAGAAAGCGTCTCGAGAATGAGCAAAAAAGTAGAGAATGACAAAATCTATGGGGCTTCTGTCGACTAAGAATTGGATAAATAAAGCTCYATTGAAAAAAAGATTACATCCTTGGGAAATGAAAAAGGTCTTTTTGAAATAAAAAGACTGGTTTTTTCTACATCCGTCTCATGATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34776</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>223807</contig_pos>
        <strand>+</strand>
        <context>AGCTCYATTG[A/G]AAAAAAGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCTATGGGGCTTCTGTCGACTAAGAATTGGATAAATAAAGCTCCATTG</left_flank>
        <right_flank>AAAAAAGATTACATCCTTGGGAAATGAAAAAGGTCTTTTTGAAATAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTCCTGATGGAGAGAGAGTGAGAGAGCAAGCGCGCACTGGGAAGCAATGAAAACGTCCCATTGAAGGGAGTGGAGGACTTGGAAGAGCTTTAAAAGAGCTTCTTGAAAGAATGAAGGCGCTTTGAAGCAAGAAAGTCTCTTGGAAAGTTGCTGAGCGGGAAATGTGCCTTTTGCGAAAATAGCATTTTTTGAAAAGAGAAAAGGACGGTTAGGAGCGCGAAATGAAAGCAGATACACTTTAGGTTAAGCGGAAAATAATTTTTAAAGCCAAGAAGAGAAAACGAAAAAGAAATAAATAAAAAATTATAGGCTTACACAAAACAATATGTTCGTAACTGTGAGAATTTGGATATAAGAAATCTTATTAGAAGTCATGGAAACATGAGCTTTTTTGAATAGAAAAAAAAGAAAGCGTCTCGAGAATGAGCAAAAAAGTAGAGAATGACAAAATCTATGGGGCTTCTGTCGACTAAGAATTGGATAAATAAAGCTCCATTGAAAAAAAGATTACATCCTTGGGAAATGAAAAAGGTCTTTTTGAAATAAAAAGACTGGTTTTTTCTACATCCGTCTCATGATAATATCTTTCCGAAAAAACAATCTGGTAAAAAATATATTTTGTACTAGTTTGCTATTACATTTTGCTATTCTGCTATTGTCGGACGACTAATTCGAAAAAAACTAATTCTCAAGGGACCTGTGTTATAATAATATATGTTGAGAACTCCGTGATTTTCAGTTGCAACAAATTATCTATTCTTGTTCCTTTCAGTTTTCTTCGAAGATATTAAGCATTCAAATAATACAATCAAACAGAATTAGAGACATTGACGGCTTATACTTCAACGTTACGACTACAGAAGCCGAACAACTTCATGCATGTTTCGGCACACTCAGCGACAACGGCGGCAACGAATCCGACTGGAAGACAGTACCAGCTGACTGTTGATGGTGTTGGGTCCTCCAACTGAAACGTCTCGTATCTGGAAAAATTCAGAA</canonical>
            <polymorphic>GGTCCTGATGGAGAGAGAGTGAGAGAGCAAGCGCGCACTGGGAAGCAATGAAAACGTCCCATTGAAGGGAGTGGAGGACTTGGAAGAGCTTTAAAAGAGCTTCTTGAAAGAATGAAGGCGCTTTGAAGCAAGAAAGTCTCTTGGAAAGTTGCTGAGCGGGAAATGTGCCTTTTGCGAAAATAGCATTTTTTGAAAAGAGAAAAGGACGGTTAGGAGCGCGAAATGAAAGCAGATACACTTTAGGTTAAGCGGAAAATAATTTTTAAAGCCAAGAAGAGAAAACGAAAAAGAAATAAATAAAAAATTATAGGCTTACACAAAACAATATGTTCGTAACTGTGAGAATTTGGATATAAGAAATCTTATTAGAAGTCATGGAAACATGAGCTTTTTTGAATAGAAAAAAAAGAAAGCGTCTCGAGAATGAGCAAAAAAGTAGAGAATGACAAAATCTATGGGGCTTCTGTCGACTAAGAATTGGATAAATAAAGCTCCATTGRAAAAAAGATTACATCCTTGGGAAATGAAAAAGGTCTTTTTGAAATAAAAAGACTGGTTTTTTCTACATCCGTCTCATGATAATATCTTTCCGAAAAAACAATCTGGTAAAAAATATATTTTGTACTAGTTTGCTATTACATTTTGCTATTCTGCTATTGTCGGACGACTAATTCGAAAAAAACTAATTCTCAAGGGACCTGTGTTATAATAATATATGTTGAGAACTCCGTGATTTTCAGTTGCAACAAATTATCTATTCTTGTTCCTTTCAGTTTTCTTCGAAGATATTAAGCATTCAAATAATACAATCAAACAGAATTAGAGACATTGACGGCTTATACTTCAACGTTACGACTACAGAAGCCGAACAACTTCATGCATGTTTCGGCACACTCAGCGACAACGGCGGCAACGAATCCGACTGGAAGACAGTACCAGCTGACTGTTGATGGTGTTGGGTCCTCCAACTGAAACGTCTCGTATCTGGAAAAATTCAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTGAGAATTTGGATATAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTATCATGAGACGGATGTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTGTGAGAATTTGGATATAAGAAATCTTATTAGAAGTCATGGAAACATGAGCTTTTTTGAATAGAAAAAAAAGAAAGCGTCTCGAGAATGAGCAAAAAAGTAGAGAATGACAAAATCTATGGGGCTTCTGTCGACTAAGAATTGGATAAATAAAGCTCCATTGAAAAAAAGATTACATCCTTGGGAAATGAAAAAGGTCTTTTTGAAATAAAAAGACTGGTTTTTTCTACATCCGTCTCATGATAAT</canonical_amplicon>
		<polymorphic_amplicon>CTGTGAGAATTTGGATATAAGAAATCTTATTAGAAGTCATGGAAACATGAGCTTTTTTGAATAGAAAAAAAAGAAAGCGTCTCGAGAATGAGCAAAAAAGTAGAGAATGACAAAATCTATGGGGCTTCTGTCGACTAAGAATTGGATAAATAAAGCTCCATTGRAAAAAAGATTACATCCTTGGGAAATGAAAAAGGTCTTTTTGAAATAAAAAGACTGGTTTTTTCTACATCCGTCTCATGATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34777</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>223970</contig_pos>
        <strand>+</strand>
        <context>GCTATTGTCG[A/G]ACGACTAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATATTTTGTACTAGTTTGCTATTACATTTTGCTATTCTGCTATTGTCG</left_flank>
        <right_flank>ACGACTAATTCGAAAAAAACTAATTCTCAAGGGACCTGTGTTATAATAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGCCTTTTGCGAAAATAGCATTTTTTGAAAAGAGAAAAGGACGGTTAGGAGCGCGAAATGAAAGCAGATACACTTTAGGTTAAGCGGAAAATAATTTTTAAAGCCAAGAAGAGAAAACGAAAAAGAAATAAATAAAAAATTATAGGCTTACACAAAACAATATGTTCGTAACTGTGAGAATTTGGATATAAGAAATCTTATTAGAAGTCATGGAAACATGAGCTTTTTTGAATAGAAAAAAAAGAAAGCGTCTCGAGAATGAGCAAAAAAGTAGAGAATGACAAAATCTATGGGGCTTCTGTCGACTAAGAATTGGATAAATAAAGCTCCATTGAAAAAAAGATTACATCCTTGGGAAATGAAAAAGGTCTTTTTGAAATAAAAAGACTGGTTTTTTCTACATCCGTCTCATGATAATATCTTTCCGAAAAAACAATCTGGTAAAAAATATATTTTGTACTAGTTTGCTATTACATTTTGCTATTCTGCTATTGTCGGACGACTAATTCGAAAAAAACTAATTCTCAAGGGACCTGTGTTATAATAATATATGTTGAGAACTCCGTGATTTTCAGTTGCAACAAATTATCTATTCTTGTTCCTTTCAGTTTTCTTCGAAGATATTAAGCATTCAAATAATACAATCAAACAGAATTAGAGACATTGACGGCTTATACTTCAACGTTACGACTACAGAAGCCGAACAACTTCATGCATGTTTCGGCACACTCAGCGACAACGGCGGCAACGAATCCGACTGGAAGACAGTACCAGCTGACTGTTGATGGTGTTGGGTCCTCCAACTGAAACGTCTCGTATCTGGAAAAATTCAGAACTGGATCAGTGTGATACTTTGAGTTCTCTTGTTAGACTCAGAACTAGAAGTTGCAATCAAAAAAGCTTTTGAACTATTTACAAGGTGGGGCAAAAGTCTGGTAACCAAAAGAAAACGTCATAAATTCTCAGAAAATCAGCTTCAAATTTTAACAGAACGTCAT</canonical>
            <polymorphic>TGTGCCTTTTGCGAAAATAGCATTTTTTGAAAAGAGAAAAGGACGGTTAGGAGCGCGAAATGAAAGCAGATACACTTTAGGTTAAGCGGAAAATAATTTTTAAAGCCAAGAAGAGAAAACGAAAAAGAAATAAATAAAAAATTATAGGCTTACACAAAACAATATGTTCGTAACTGTGAGAATTTGGATATAAGAAATCTTATTAGAAGTCATGGAAACATGAGCTTTTTTGAATAGAAAAAAAAGAAAGCGTCTCGAGAATGAGCAAAAAAGTAGAGAATGACAAAATCTATGGGGCTTCTGTCGACTAAGAATTGGATAAATAAAGCTCCATTGAAAAAAAGATTACATCCTTGGGAAATGAAAAAGGTCTTTTTGAAATAAAAAGACTGGTTTTTTCTACATCCGTCTCATGATAATATCTTTCCGAAAAAACAATCTGGTAAAAAATATATTTTGTACTAGTTTGCTATTACATTTTGCTATTCTGCTATTGTCGRACGACTAATTCGAAAAAAACTAATTCTCAAGGGACCTGTGTTATAATAATATATGTTGAGAACTCCGTGATTTTCAGTTGCAACAAATTATCTATTCTTGTTCCTTTCAGTTTTCTTCGAAGATATTAAGCATTCAAATAATACAATCAAACAGAATTAGAGACATTGACGGCTTATACTTCAACGTTACGACTACAGAAGCCGAACAACTTCATGCATGTTTCGGCACACTCAGCGACAACGGCGGCAACGAATCCGACTGGAAGACAGTACCAGCTGACTGTTGATGGTGTTGGGTCCTCCAACTGAAACGTCTCGTATCTGGAAAAATTCAGAACTGGATCAGTGTGATACTTTGAGTTCTCTTGTTAGACTCAGAACTAGAAGTTGCAATCAAAAAAGCTTTTGAACTATTTACAAGGTGGGGCAAAAGTCTGGTAACCAAAAGAAAACGTCATAAATTCTCAGAAAATCAGCTTCAAATTTTAACAGAACGTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>428 258 90 77 71 43 33</canonical_bands>
                <polymorphic_bands>428 329 90 77 43 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGATTACATCCTTGGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATAATTTGTTGCAACTGAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAGATTACATCCTTGGGAAATGAAAAAGGTCTTTTTGAAATAAAAAGACTGGTTTTTTCTACATCCGTCTCATGATAATATCTTTCCGAAAAAACAATCTGGTAAAAAATATATTTTGTACTAGTTTGCTATTACATTTTGCTATTCTGCTATTGTCGGACGACTAATTCGAAAAAAACTAATTCTCAAGGGACCTGTGTTATAATAATATATGTTGAGAACTCCGTGATTTTCAGTTGCAACAAATTAT</canonical_amplicon>
		<polymorphic_amplicon>AAAGATTACATCCTTGGGAAATGAAAAAGGTCTTTTTGAAATAAAAAGACTGGTTTTTTCTACATCCGTCTCATGATAATATCTTTCCGAAAAAACAATCTGGTAAAAAATATATTTTGTACTAGTTTGCTATTACATTTTGCTATTCTGCTATTGTCGRACGACTAATTCGAAAAAAACTAATTCTCAAGGGACCTGTGTTATAATAATATATGTTGAGAACTCCGTGATTTTCAGTTGCAACAAATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34778</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>224148</contig_pos>
        <strand>+</strand>
        <context>GACGGCTTAT[A/G]CTTCAACGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGCATTCAAATAATACAATCAAACAGAATTAGAGACATTGACGGCTTAT</left_flank>
        <right_flank>CTTCAACGTTACGACTACAGAAGCCGAACAACTTCATGCATGTTTCGGCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATTTGGATATAAGAAATCTTATTAGAAGTCATGGAAACATGAGCTTTTTTGAATAGAAAAAAAAGAAAGCGTCTCGAGAATGAGCAAAAAAGTAGAGAATGACAAAATCTATGGGGCTTCTGTCGACTAAGAATTGGATAAATAAAGCTCCATTGAAAAAAAGATTACATCCTTGGGAAATGAAAAAGGTCTTTTTGAAATAAAAAGACTGGTTTTTTCTACATCCGTCTCATGATAATATCTTTCCGAAAAAACAATCTGGTAAAAAATATATTTTGTACTAGTTTGCTATTACATTTTGCTATTCTGCTATTGTCGGACGACTAATTCGAAAAAAACTAATTCTCAAGGGACCTGTGTTATAATAATATATGTTGAGAACTCCGTGATTTTCAGTTGCAACAAATTATCTATTCTTGTTCCTTTCAGTTTTCTTCGAAGATATTAAGCATTCAAATAATACAATCAAACAGAATTAGAGACATTGACGGCTTATACTTCAACGTTACGACTACAGAAGCCGAACAACTTCATGCATGTTTCGGCACACTCAGCGACAACGGCGGCAACGAATCCGACTGGAAGACAGTACCAGCTGACTGTTGATGGTGTTGGGTCCTCCAACTGAAACGTCTCGTATCTGGAAAAATTCAGAACTGGATCAGTGTGATACTTTGAGTTCTCTTGTTAGACTCAGAACTAGAAGTTGCAATCAAAAAAGCTTTTGAACTATTTACAAGGTGGGGCAAAAGTCTGGTAACCAAAAGAAAACGTCATAAATTCTCAGAAAATCAGCTTCAAATTTTAACAGAACGTCATTAAAGAGATTTGTCTTTCTTTGTTTCTGGAAGCTCTATTTCTCATGGCGAGGCTCAACTTCTTCGGGTAGCATCTATGGTCGCACGGGTGTAGTCTGTGGGCAAATTGTCCTATTCAGCCGGCAAAATAGTTCAGAGAGCACCCAAAATCTTGTGAAAACAAACATCAGCAAATTCTT</canonical>
            <polymorphic>AGAATTTGGATATAAGAAATCTTATTAGAAGTCATGGAAACATGAGCTTTTTTGAATAGAAAAAAAAGAAAGCGTCTCGAGAATGAGCAAAAAAGTAGAGAATGACAAAATCTATGGGGCTTCTGTCGACTAAGAATTGGATAAATAAAGCTCCATTGAAAAAAAGATTACATCCTTGGGAAATGAAAAAGGTCTTTTTGAAATAAAAAGACTGGTTTTTTCTACATCCGTCTCATGATAATATCTTTCCGAAAAAACAATCTGGTAAAAAATATATTTTGTACTAGTTTGCTATTACATTTTGCTATTCTGCTATTGTCGGACGACTAATTCGAAAAAAACTAATTCTCAAGGGACCTGTGTTATAATAATATATGTTGAGAACTCCGTGATTTTCAGTTGCAACAAATTATCTATTCTTGTTCCTTTCAGTTTTCTTCGAAGATATTAAGCATTCAAATAATACAATCAAACAGAATTAGAGACATTGACGGCTTATRCTTCAACGTTACGACTACAGAAGCCGAACAACTTCATGCATGTTTCGGCACACTCAGCGACAACGGCGGCAACGAATCCGACTGGAAGACAGTACCAGCTGACTGTTGATGGTGTTGGGTCCTCCAACTGAAACGTCTCGTATCTGGAAAAATTCAGAACTGGATCAGTGTGATACTTTGAGTTCTCTTGTTAGACTCAGAACTAGAAGTTGCAATCAAAAAAGCTTTTGAACTATTTACAAGGTGGGGCAAAAGTCTGGTAACCAAAAGAAAACGTCATAAATTCTCAGAAAATCAGCTTCAAATTTTAACAGAACGTCATTAAAGAGATTTGTCTTTCTTTGTTTCTGGAAGCTCTATTTCTCATGGCGAGGCTCAACTTCTTCGGGTAGCATCTATGGTCGCACGGGTGTAGTCTGTGGGCAAATTGTCCTATTCAGCCGGCAAAATAGTTCAGAGAGCACCCAAAATCTTGTGAAAACAAACATCAGCAAATTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCGAAGATATTAAGCATTCAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGTATCACACTGATCCAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTTCGAAGATATTAAGCATTCAAATAATACAATCAAACAGAATTAGAGACATTGACGGCTTATACTTCAACGTTACGACTACAGAAGCCGAACAACTTCATGCATGTTTCGGCACACTCAGCGACAACGGCGGCAACGAATCCGACTGGAAGACAGTACCAGCTGACTGTTGATGGTGTTGGGTCCTCCAACTGAAACGTCTCGTATCTGGAAAAATTCAGAACTGGATCAGTGTGATACTTT</canonical_amplicon>
		<polymorphic_amplicon>CTTCGAAGATATTAAGCATTCAAATAATACAATCAAACAGAATTAGAGACATTGACGGCTTATRCTTCAACGTTACGACTACAGAAGCCGAACAACTTCATGCATGTTTCGGCACACTCAGCGACAACGGCGGCAACGAATCCGACTGGAAGACAGTACCAGCTGACTGTTGATGGTGTTGGGTCCTCCAACTGAAACGTCTCGTATCTGGAAAAATTCAGAACTGGATCAGTGTGATACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34779</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>224160</contig_pos>
        <strand>+</strand>
        <context>TTCAACGTTA[C/T]GACTACAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATACAATCAAACAGAATTAGAGACATTGACGGCTTATACTTCAACGTTA</left_flank>
        <right_flank>GACTACAGAAGCCGAACAACTTCATGCATGTTTCGGCACACTCAGCGACA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAGAAATCTTATTAGAAGTCATGGAAACATGAGCTTTTTTGAATAGAAAAAAAAGAAAGCGTCTCGAGAATGAGCAAAAAAGTAGAGAATGACAAAATCTATGGGGCTTCTGTCGACTAAGAATTGGATAAATAAAGCTCCATTGAAAAAAAGATTACATCCTTGGGAAATGAAAAAGGTCTTTTTGAAATAAAAAGACTGGTTTTTTCTACATCCGTCTCATGATAATATCTTTCCGAAAAAACAATCTGGTAAAAAATATATTTTGTACTAGTTTGCTATTACATTTTGCTATTCTGCTATTGTCGGACGACTAATTCGAAAAAAACTAATTCTCAAGGGACCTGTGTTATAATAATATATGTTGAGAACTCCGTGATTTTCAGTTGCAACAAATTATCTATTCTTGTTCCTTTCAGTTTTCTTCGAAGATATTAAGCATTCAAATAATACAATCAAACAGAATTAGAGACATTGACGGCTTATACTTCAACGTTACGACTACAGAAGCCGAACAACTTCATGCATGTTTCGGCACACTCAGCGACAACGGCGGCAACGAATCCGACTGGAAGACAGTACCAGCTGACTGTTGATGGTGTTGGGTCCTCCAACTGAAACGTCTCGTATCTGGAAAAATTCAGAACTGGATCAGTGTGATACTTTGAGTTCTCTTGTTAGACTCAGAACTAGAAGTTGCAATCAAAAAAGCTTTTGAACTATTTACAAGGTGGGGCAAAAGTCTGGTAACCAAAAGAAAACGTCATAAATTCTCAGAAAATCAGCTTCAAATTTTAACAGAACGTCATTAAAGAGATTTGTCTTTCTTTGTTTCTGGAAGCTCTATTTCTCATGGCGAGGCTCAACTTCTTCGGGTAGCATCTATGGTCGCACGGGTGTAGTCTGTGGGCAAATTGTCCTATTCAGCCGGCAAAATAGTTCAGAGAGCACCCAAAATCTTGTGAAAACAAACATCAGCAAATTCTTTACACGTTTGCT</canonical>
            <polymorphic>TAAGAAATCTTATTAGAAGTCATGGAAACATGAGCTTTTTTGAATAGAAAAAAAAGAAAGCGTCTCGAGAATGAGCAAAAAAGTAGAGAATGACAAAATCTATGGGGCTTCTGTCGACTAAGAATTGGATAAATAAAGCTCCATTGAAAAAAAGATTACATCCTTGGGAAATGAAAAAGGTCTTTTTGAAATAAAAAGACTGGTTTTTTCTACATCCGTCTCATGATAATATCTTTCCGAAAAAACAATCTGGTAAAAAATATATTTTGTACTAGTTTGCTATTACATTTTGCTATTCTGCTATTGTCGGACGACTAATTCGAAAAAAACTAATTCTCAAGGGACCTGTGTTATAATAATATATGTTGAGAACTCCGTGATTTTCAGTTGCAACAAATTATCTATTCTTGTTCCTTTCAGTTTTCTTCGAAGATATTAAGCATTCAAATAATACAATCAAACAGAATTAGAGACATTGACGGCTTATACTTCAACGTTAYGACTACAGAAGCCGAACAACTTCATGCATGTTTCGGCACACTCAGCGACAACGGCGGCAACGAATCCGACTGGAAGACAGTACCAGCTGACTGTTGATGGTGTTGGGTCCTCCAACTGAAACGTCTCGTATCTGGAAAAATTCAGAACTGGATCAGTGTGATACTTTGAGTTCTCTTGTTAGACTCAGAACTAGAAGTTGCAATCAAAAAAGCTTTTGAACTATTTACAAGGTGGGGCAAAAGTCTGGTAACCAAAAGAAAACGTCATAAATTCTCAGAAAATCAGCTTCAAATTTTAACAGAACGTCATTAAAGAGATTTGTCTTTCTTTGTTTCTGGAAGCTCTATTTCTCATGGCGAGGCTCAACTTCTTCGGGTAGCATCTATGGTCGCACGGGTGTAGTCTGTGGGCAAATTGTCCTATTCAGCCGGCAAAATAGTTCAGAGAGCACCCAAAATCTTGTGAAAACAAACATCAGCAAATTCTTTACACGTTTGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>495 253 252</canonical_bands>
                <polymorphic_bands>747 253</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCGAAGATATTAAGCATTCAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGTATCACACTGATCCAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTTCGAAGATATTAAGCATTCAAATAATACAATCAAACAGAATTAGAGACATTGACGGCTTATACTTCAACGTTACGACTACAGAAGCCGAACAACTTCATGCATGTTTCGGCACACTCAGCGACAACGGCGGCAACGAATCCGACTGGAAGACAGTACCAGCTGACTGTTGATGGTGTTGGGTCCTCCAACTGAAACGTCTCGTATCTGGAAAAATTCAGAACTGGATCAGTGTGATACTTT</canonical_amplicon>
		<polymorphic_amplicon>CTTCGAAGATATTAAGCATTCAAATAATACAATCAAACAGAATTAGAGACATTGACGGCTTATACTTCAACGTTAYGACTACAGAAGCCGAACAACTTCATGCATGTTTCGGCACACTCAGCGACAACGGCGGCAACGAATCCGACTGGAAGACAGTACCAGCTGACTGTTGATGGTGTTGGGTCCTCCAACTGAAACGTCTCGTATCTGGAAAAATTCAGAACTGGATCAGTGTGATACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34780</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>351679</contig_pos>
        <strand></strand>
        <context>acattccgtt[C/T]gagacccaca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATCGAACGGTTTCGACAGAGAGCAAAAATATATATAAATACATTCCGTT</left_flank>
        <right_flank>GAGACCCACAAGCAAATTTTTCGCGCGCATTCGTCATACCGTAGTTCAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGAGAAATGGGTCCGCGTGGGGGAGAATTTTAGAACTAGAATTTAATTATTTTTTAGAGATCCCGTGTTTAGTCAATTGATCCAGGAATGCTCGGAATGGCTTTTTCGGCACTTCCGAAATGTCGAAAATTCGAGTTTTCAATAATTCGAACTTTCTGAATTTCGGACTATTCCGATTTTTGCAATTTCGCATATTTTCAGAATTTCAAAAACTCTGATTTTCAAAATTTCAAAATTTCAGAATGTCGAAATATTCCGTTTTCCAAATTTTGGAATTTTGACATATTCCGATTTTCAAAACTAAAGAATTTCGAAATATCCCGATTATCAAAGTTTCGGAATTTCGTAGTATTGCGATTTTGATATTCTCAGGATCTTTAAAAATTAAAACTTTATAGTAGAAATTACATTTCCCATCACAAAAATGCCGAAAACGGGTGAAAATTGATCGAACGGTTTCGACAGAGAGCAAAAATATATATAAATACATTCCGTTCGAGACCCACAAGCAAATTTTTCGCGCGCATTCGTCATACCGTAGTTCAAAATCTCTCAAACGTTTCGGAAACGTTCGGTTGGATATTAATTCCAAAATAGTCGGAATATACGGAATTCCGAATTCCGTTCTGAACATCCCTGAATTGATCTATAAATCAAAACTTTTCTAATGATAACAATTAAAGAGCCCATATTCCGATTCTTATTAGGAACGGAGATTAAGAAATTCTGGAATCGTTTTCACTATTTTTGAAATTATCCTTGTACAAATTCAATTCGTAAAATTATCAAATCACTTCTTAAAACGCTCTTTTGTCAGTTATATTAATTTTCACAGGACCCTTAGAACCTTTTCCACGCACATTCCTTTTGGTCCCTTTTTGCATTTTTTACACGACTACTCCTTTTTTATTTTCAAAGAACCAGCGTAGTAAAAAGAAGTGAGTGTTTGTAGTCTCCTCTAATCTACGCTTCGAAAGTCCAAAAAATTAAACTGGTC</canonical>
            <polymorphic>TTTTGAGAAATGGGTCCGCGTGGGGGAGAATTTTAGAACTAGAATTTAATTATTTTTTAGAGATCCCGTGTTTAGTCAATTGATCCAGGAATGCTCGGAATGGCTTTTTCGGCACTTCCGAAATGTCGAAAATTCGAGTTTTCAATAATTCGAACTTTCTGAATTTCGGACTATTCCGATTTTTGCAATTTCGCATATTTTCAGAATTTCAAAAACTCTGATTTTCAAAATTTCAAAATTTCAGAATGTCGAAATATTCCGTTTTCCAAATTTTGGAATTTTGACATATTCCGATTTTCAAAACTAAAGAATTTCGAAATATCCCGATTATCAAAGTTTCGGAATTTCGTAGTATTGCGATTTTGATATTCTCAGGATCTTTAAAAATTAAAACTTTATAGTAGAAATTACATTTCCCATCACAAAAATGCCGAAAACGGGTGAAAATTGATCGAACGGTTTCGACAGAGAGCAAAAATATATATAAATACATTCCGTTYGAGACCCACAAGCAAATTTTTCGCGCGCATTCGTCATACCGTAGTTCAAAATCTCTCAAACGTTTCGGAAACGTTCGGTTGGATATTAATTCCAAAATAGTCGGAATATACGGAATTCCGAATTCCGTTCTGAACATCCCTGAATTGATCTATAAATCAAAACTTTTCTAATGATAACAATTAAAGAGCCCATATTCCGATTCTTATTAGGAACGGAGATTAAGAAATTCTGGAATCGTTTTCACTATTTTTGAAATTATCCTTGTACAAATTCAATTCGTAAAATTATCAAATCACTTCTTAAAACGCTCTTTTGTCAGTTATATTAATTTTCACAGGACCCTTAGAACCTTTTCCACGCACATTCCTTTTGGTCCCTTTTTGCATTTTTTACACGACTACTCCTTTTTTATTTTCAAAGAACCAGCGTAGTAAAAAGAAGTGAGTGTTTGTAGTCTCCTCTAATCTACGCTTCGAAAGTCCAAAAAATTAAACTGGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>475 138 127 99 65 37 25 16 10 8</canonical_bands>
                <polymorphic_bands>512 138 127 99 65 25 16 10 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>323 270 230 127 50</canonical_bands>
                <polymorphic_bands>357 323 270 50</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGATCCCGTGTTTAGTCAAT</pcr_primer_p1>
		<pcr_primer_p2>ATGGGCTCTTTAATTGTTATCAT</pcr_primer_p2>
		<pcr_amplicon_size>634</pcr_amplicon_size>
		<canonical_amplicon>GAGATCCCGTGTTTAGTCAATTGATCCAGGAATGCTCGGAATGGCTTTTTCGGCACTTCCGAAATGTCGAAAATTCGAGTTTTCAATAATTCGAACTTTCTGAATTTCGGACTATTCCGATTTTTGCAATTTCGCATATTTTCAGAATTTCAAAAACTCTGATTTTCAAAATTTCAAAATTTCAGAATGTCGAAATATTCCGTTTTCCAAATTTTGGAATTTTGACATATTCCGATTTTCAAAACTAAAGAATTTCGAAATATCCCGATTATCAAAGTTTCGGAATTTCGTAGTATTGCGATTTTGATATTCTCAGGATCTTTAAAAATTAAAACTTTATAGTAGAAATTACATTTCCCATCACAAAAATGCCGAAAACGGGTGAAAATTGATCGAACGGTTTCGACAGAGAGCAAAAATATATATAAATACATTCCGTTCGAGACCCACAAGCAAATTTTTCGCGCGCATTCGTCATACCGTAGTTCAAAATCTCTCAAACGTTTCGGAAACGTTCGGTTGGATATTAATTCCAAAATAGTCGGAATATACGGAATTCCGAATTCCGTTCTGAACATCCCTGAATTGATCTATAAATCAAAACTTTTCTAATGATAACAATTAAAGAGCCCAT</canonical_amplicon>
		<polymorphic_amplicon>GAGATCCCGTGTTTAGTCAATTGATCCAGGAATGCTCGGAATGGCTTTTTCGGCACTTCCGAAATGTCGAAAATTCGAGTTTTCAATAATTCGAACTTTCTGAATTTCGGACTATTCCGATTTTTGCAATTTCGCATATTTTCAGAATTTCAAAAACTCTGATTTTCAAAATTTCAAAATTTCAGAATGTCGAAATATTCCGTTTTCCAAATTTTGGAATTTTGACATATTCCGATTTTCAAAACTAAAGAATTTCGAAATATCCCGATTATCAAAGTTTCGGAATTTCGTAGTATTGCGATTTTGATATTCTCAGGATCTTTAAAAATTAAAACTTTATAGTAGAAATTACATTTCCCATCACAAAAATGCCGAAAACGGGTGAAAATTGATCGAACGGTTTCGACAGAGAGCAAAAATATATATAAATACATTCCGTTYGAGACCCACAAGCAAATTTTTCGCGCGCATTCGTCATACCGTAGTTCAAAATCTCTCAAACGTTTCGGAAACGTTCGGTTGGATATTAATTCCAAAATAGTCGGAATATACGGAATTCCGAATTCCGTTCTGAACATCCCTGAATTGATCTATAAATCAAAACTTTTCTAATGATAACAATTAAAGAGCCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34781</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>412145</contig_pos>
        <strand>+</strand>
        <context>AGAATGTCCT[C/T]ATCGTCGCCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTGTATGATTTTTCGAGAAAAAACAAGAAAAAGAAACAGAATGTCCT</left_flank>
        <right_flank>ATCGTCGCCCACTGCTGGCCAGCAAACCAGGAGTTTGGCACGAAAAACAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATACTGTAACTGATGTAACTCGGCTGGAACTGGTGGGAGAATTCTAATATTCTCAAAAGCGTCTAGGTATTATATTCTTCACTGACTTTGGAATTTAATTCAAATCTTGGGTTTACAAGGTTTCTGAGATTTCTTCAACGTGTAGACTTACTTTGATATTTTGTGTCTCTTGATTTTGGGTGCTTTTTTGTGCCTTTGGTGCTTGGTTGACCATTTTGTCACACAGTTGTCTTTGATAACTGAAAATTCAACAGTTTTAAAACAATCGACAAACTTTGAGATCAAATAATAGAAAGAAATCGGAATAAGTGTTACAAAGAAAACTGTTTCTCAGACAGCGTAGCGATAAAAAGAGAAAAAAACATTGTAGGTAGAAGTTTTTAAAGAAGGAAAGGAGAAAGGGGCCTTCATCAAAACAATTTTAGTTTTAAAAATGTTTTCGGGAAGTATTTTGTATGATTTTTCGAGAAAAAACAAGAAAAAGAAACAGAATGTCCTTATCGTCGCCCACTGCTGGCCAGCAAACCAGGAGTTTGGCACGAAAAACACTGATAACGATTATAAGAATAGAGGGAAAAAAGTGAAAAGTATTAAAGAGCAACTGCGCGTCAATCAGACCTCCCATACGGATAACATACGTAGTAAAGTGTAAATTTTGATATAAGGAAAAAAATAGTGTGAGACTATCAAATTTATTTTTTTTTTGGAAGTGACAGCAAGATTTTCGAAAATGAGAAAAATTCATGAATGGAAAATATGCTAATGAACACGAAAAGGGTAACTAGCAAAATTTATGAATAAAAATAGTACTAGCTTCGATTGATTAGTAAATTCATTTATAACCAGTCGGTTCCCTTCTCGCTCTTGCTGACAATACCCGTAAAGTTACTAAAAAAATTTTTATACAGGAAAATTCTGAAACTCTAAAAATTTGAAGTTTAGGAATTCTAGAGTTTTGAAATTCAGAAAACCAATTATTTTAAAATTTTAAGATTGAAG</canonical>
            <polymorphic>GATACTGTAACTGATGTAACTCGGCTGGAACTGGTGGGAGAATTCTAATATTCTCAAAAGCGTCTAGGTATTATATTCTTCACTGACTTTGGAATTTAATTCAAATCTTGGGTTTACAAGGTTTCTGAGATTTCTTCAACGTGTAGACTTACTTTGATATTTTGTGTCTCTTGATTTTGGGTGCTTTTTTGTGCCTTTGGTGCTTGGTTGACCATTTTGTCACACAGTTGTCTTTGATAACTGAAAATTCAACAGTTTTAAAACAATCGACAAACTTTGAGATCAAATAATAGAAAGAAATCGGAATAAGTGTTACAAAGAAAACTGTTTCTCAGACAGCGTAGCGATAAAAAGAGAAAAAAACATTGTAGGTAGAAGTTTTTAAAGAAGGAAAGGAGAAAGGGGCCTTCATCAAAACAATTTTAGTTTTAAAAATGTTTTCGGGAAGTATTTTGTATGATTTTTCGAGAAAAAACAAGAAAAAGAAACAGAATGTCCTYATCGTCGCCCACTGCTGGCCAGCAAACCAGGAGTTTGGCACGAAAAACACTGATAACGATTATAAGAATAGAGGGAAAAAAGTGAAAAGTATTAAAGAGCAACTGCGCGTCAATCAGACCTCCCATACGGATAACATACGTAGTAAAGTGTAAATTTTGATATAAGGAAAAAAATAGTGTGAGACTATCAAATTTATTTTTTTTTTGGAAGTGACAGCAAGATTTTCGAAAATGAGAAAAATTCATGAATGGAAAATATGCTAATGAACACGAAAAGGGTAACTAGCAAAATTTATGAATAAAAATAGTACTAGCTTCGATTGATTAGTAAATTCATTTATAACCAGTCGGTTCCCTTCTCGCTCTTGCTGACAATACCCGTAAAGTTACTAAAAAAATTTTTATACAGGAAAATTCTGAAACTCTAAAAATTTGAAGTTTAGGAATTCTAGAGTTTTGAAATTCAGAAAACCAATTATTTTAAAATTTTAAGATTGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAACTGTTTCTCAGACAGC</pcr_primer_p1>
		<pcr_primer_p2>TCTTATAATCGTTATCAGTGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGAAAACTGTTTCTCAGACAGCGTAGCGATAAAAAGAGAAAAAAACATTGTAGGTAGAAGTTTTTAAAGAAGGAAAGGAGAAAGGGGCCTTCATCAAAACAATTTTAGTTTTAAAAATGTTTTCGGGAAGTATTTTGTATGATTTTTCGAGAAAAAACAAGAAAAAGAAACAGAATGTCCTTATCGTCGCCCACTGCTGGCCAGCAAACCAGGAGTTTGGCACGAAAAACACTGATAACGATTATAAGA</canonical_amplicon>
		<polymorphic_amplicon>AGAAAACTGTTTCTCAGACAGCGTAGCGATAAAAAGAGAAAAAAACATTGTAGGTAGAAGTTTTTAAAGAAGGAAAGGAGAAAGGGGCCTTCATCAAAACAATTTTAGTTTTAAAAATGTTTTCGGGAAGTATTTTGTATGATTTTTCGAGAAAAAACAAGAAAAAGAAACAGAATGTCCTYATCGTCGCCCACTGCTGGCCAGCAAACCAGGAGTTTGGCACGAAAAACACTGATAACGATTATAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34782</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>441546</contig_pos>
        <strand>+</strand>
        <context>GACTACAATG[G/T]ATAGTCAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTATGTCAAGGAAGACGTATTTAGCCAACACATTTAATTGACTACAATG</left_flank>
        <right_flank>ATAGTCAAAAATTCATATTTGAAAAAAGTTAATTCTTTACACAATCTCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTCGAAAAACTCTATAATCTGAACAATGTTCCACAGCTGCGATTCTCGTGTCATTCGGACTCATTCTTGCAATTTCCTGCTTCCTTCCTGACATTGGGGGGGGGGGGGGTCGATTCTGCATTTTTGACTTGATACGAATGTCTACTTAATCTCCATTTCTCGATTTTGAATTTTTGAAAAGCAGAACCTCATCGCATCAATTGGGCTACCATTAAGAATGTATAACCTGTTTTGAAAAGGTTTTTTTTAGTTTTTAATTAATTACAATTTGAAATGCTGTTTCGTAGAAGAATCTTTAAGGATGCGGGGCCTTCTGGCTCTTGTTTCCGTAATTTTAAATTTGCGTCAGTTCATCGGGGATTGAGGTTTAGTTGCCCATCCTGAACGACAAGCGTGTAAAAAGTTATTTGCAGGGTGGGTGAAAAAGGTTTTTGAAATCTGCTGAATTGTATGTCAAGGAAGACGTATTTAGCCAACACATTTAATTGACTACAATGTATAGTCAAAAATTCATATTTGAAAAAAGTTAATTCTTTACACAATCTCTAAAAAATTAACTTCACATCTTGAGCCAGGTTTAAATATCACTCTCTAACCTTGCACAAAAAACTATATTTTTGCTCCCGGTTTGCTGTGACATCCTTTAAACCTTTCTTCTTTTTCATCTTTTCTGTCAAATTTTGGGATTCTGTCTTTCCTCTTCCCTTCTTTTTTTTTGCCCCGTTTTTTGTGTGTTCTCCTTTTTTTCAGTTCTTCTGACGTTCTCATCTTTTCTTTCTGTGCGTTTCAGTTTTTTGTCAATCTCATGAGAATAGACTCTTTCTCTTGATGCATTTCTGTTTCCATTTCTGACTCTTCTTTTACAGCCGCTCATACTTGCCAGTTCAAAAATATGAATGTTGGTGAAGACATTTAGAGAAAAATAAGCCGGTACACGCAGAATTTGAAATTGGGTTATCAGGTATATCGAAAGTGTAATTACTTGAATATTTTATATT</canonical>
            <polymorphic>GAGTCGAAAAACTCTATAATCTGAACAATGTTCCACAGCTGCGATTCTCGTGTCATTCGGACTCATTCTTGCAATTTCCTGCTTCCTTCCTGACATTGGGGGGGGGGGGGGTCGATTCTGCATTTTTGACTTGATACGAATGTCTACTTAATCTCCATTTCTCGATTTTGAATTTTTGAAAAGCAGAACCTCATCGCATCAATTGGGCTACCATTAAGAATGTATAACCTGTTTTGAAAAGGTTTTTTTTAGTTTTTAATTAATTACAATTTGAAATGCTGTTTCGTAGAAGAATCTTTAAGGATGCGGGGCCTTCTGGCTCTTGTTTCCGTAATTTTAAATTTGCGTCAGTTCATCGGGGATTGAGGTTTAGTTGCCCATCCTGAACGACAAGCGTGTAAAAAGTTATTTGCAGGGTGGGTGAAAAAGGTTTTTGAAATCTGCTGAATTGTATGTCAAGGAAGACGTATTTAGCCAACACATTTAATTGACTACAATGKATAGTCAAAAATTCATATTTGAAAAAAGTTAATTCTTTACACAATCTCTAAAAAATTAACTTCACATCTTGAGCCAGGTTTAAATATCACTCTCTAACCTTGCACAAAAAACTATATTTTTGCTCCCGGTTTGCTGTGACATCCTTTAAACCTTTCTTCTTTTTCATCTTTTCTGTCAAATTTTGGGATTCTGTCTTTCCTCTTCCCTTCTTTTTTTTTGCCCCGTTTTTTGTGTGTTCTCCTTTTTTTCAGTTCTTCTGACGTTCTCATCTTTTCTTTCTGTGCGTTTCAGTTTTTTGTCAATCTCATGAGAATAGACTCTTTCTCTTGATGCATTTCTGTTTCCATTTCTGACTCTTCTTTTACAGCCGCTCATACTTGCCAGTTCAAAAATATGAATGTTGGTGAAGACATTTAGAGAAAAATAAGCCGGTACACGCAGAATTTGAAATTGGGTTATCAGGTATATCGAAAGTGTAATTACTTGAATATTTTATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAAATCTGCTGAATTGTAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTGACAGAAAAGATGAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAAATCTGCTGAATTGTATGTCAAGGAAGACGTATTTAGCCAACACATTTAATTGACTACAATGTATAGTCAAAAATTCATATTTGAAAAAAGTTAATTCTTTACACAATCTCTAAAAAATTAACTTCACATCTTGAGCCAGGTTTAAATATCACTCTCTAACCTTGCACAAAAAACTATATTTTTGCTCCCGGTTTGCTGTGACATCCTTTAAACCTTTCTTCTTTTTCATCTTTTCTGTCAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAAATCTGCTGAATTGTATGTCAAGGAAGACGTATTTAGCCAACACATTTAATTGACTACAATGKATAGTCAAAAATTCATATTTGAAAAAAGTTAATTCTTTACACAATCTCTAAAAAATTAACTTCACATCTTGAGCCAGGTTTAAATATCACTCTCTAACCTTGCACAAAAAACTATATTTTTGCTCCCGGTTTGCTGTGACATCCTTTAAACCTTTCTTCTTTTTCATCTTTTCTGTCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34783</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>441694</contig_pos>
        <strand>+</strand>
        <context>GACATCCTTT[A/G]AACCTTTCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTTGCACAAAAAACTATATTTTTGCTCCCGGTTTGCTGTGACATCCTTT</left_flank>
        <right_flank>AACCTTTCTTCTTTTTCATCTTTTCTGTCAAATTTTGGGATTCTGTCTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATCTCCATTTCTCGATTTTGAATTTTTGAAAAGCAGAACCTCATCGCATCAATTGGGCTACCATTAAGAATGTATAACCTGTTTTGAAAAGGTTTTTTTTAGTTTTTAATTAATTACAATTTGAAATGCTGTTTCGTAGAAGAATCTTTAAGGATGCGGGGCCTTCTGGCTCTTGTTTCCGTAATTTTAAATTTGCGTCAGTTCATCGGGGATTGAGGTTTAGTTGCCCATCCTGAACGACAAGCGTGTAAAAAGTTATTTGCAGGGTGGGTGAAAAAGGTTTTTGAAATCTGCTGAATTGTATGTCAAGGAAGACGTATTTAGCCAACACATTTAATTGACTACAATGTATAGTCAAAAATTCATATTTGAAAAAAGTTAATTCTTTACACAATCTCTAAAAAATTAACTTCACATCTTGAGCCAGGTTTAAATATCACTCTCTAACCTTGCACAAAAAACTATATTTTTGCTCCCGGTTTGCTGTGACATCCTTTAAACCTTTCTTCTTTTTCATCTTTTCTGTCAAATTTTGGGATTCTGTCTTTCCTCTTCCCTTCTTTTTTTTTGCCCCGTTTTTTGTGTGTTCTCCTTTTTTTCAGTTCTTCTGACGTTCTCATCTTTTCTTTCTGTGCGTTTCAGTTTTTTGTCAATCTCATGAGAATAGACTCTTTCTCTTGATGCATTTCTGTTTCCATTTCTGACTCTTCTTTTACAGCCGCTCATACTTGCCAGTTCAAAAATATGAATGTTGGTGAAGACATTTAGAGAAAAATAAGCCGGTACACGCAGAATTTGAAATTGGGTTATCAGGTATATCGAAAGTGTAATTACTTGAATATTTTATATTTTTGTATTCAAGCAATCGGATACCCTCTACAAACTTATTCATCTGGCAAAGCGTTCTGATGTTCCAATCAAGCTCTTCCATAATTCTAAAACTGTTTCTGAAGCTCAAAAGCTGCTTTCATCTGACAAAGAAGATGTCTCTAAACGAG</canonical>
            <polymorphic>TAATCTCCATTTCTCGATTTTGAATTTTTGAAAAGCAGAACCTCATCGCATCAATTGGGCTACCATTAAGAATGTATAACCTGTTTTGAAAAGGTTTTTTTTAGTTTTTAATTAATTACAATTTGAAATGCTGTTTCGTAGAAGAATCTTTAAGGATGCGGGGCCTTCTGGCTCTTGTTTCCGTAATTTTAAATTTGCGTCAGTTCATCGGGGATTGAGGTTTAGTTGCCCATCCTGAACGACAAGCGTGTAAAAAGTTATTTGCAGGGTGGGTGAAAAAGGTTTTTGAAATCTGCTGAATTGTATGTCAAGGAAGACGTATTTAGCCAACACATTTAATTGACTACAATGTATAGTCAAAAATTCATATTTGAAAAAAGTTAATTCTTTACACAATCTCTAAAAAATTAACTTCACATCTTGAGCCAGGTTTAAATATCACTCTCTAACCTTGCACAAAAAACTATATTTTTGCTCCCGGTTTGCTGTGACATCCTTTRAACCTTTCTTCTTTTTCATCTTTTCTGTCAAATTTTGGGATTCTGTCTTTCCTCTTCCCTTCTTTTTTTTTGCCCCGTTTTTTGTGTGTTCTCCTTTTTTTCAGTTCTTCTGACGTTCTCATCTTTTCTTTCTGTGCGTTTCAGTTTTTTGTCAATCTCATGAGAATAGACTCTTTCTCTTGATGCATTTCTGTTTCCATTTCTGACTCTTCTTTTACAGCCGCTCATACTTGCCAGTTCAAAAATATGAATGTTGGTGAAGACATTTAGAGAAAAATAAGCCGGTACACGCAGAATTTGAAATTGGGTTATCAGGTATATCGAAAGTGTAATTACTTGAATATTTTATATTTTTGTATTCAAGCAATCGGATACCCTCTACAAACTTATTCATCTGGCAAAGCGTTCTGATGTTCCAATCAAGCTCTTCCATAATTCTAAAACTGTTTCTGAAGCTCAAAAGCTGCTTTCATCTGACAAAGAAGATGTCTCTAAACGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 243 190 66</canonical_bands>
                <polymorphic_bands>567 243 190</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 147 66 66 45 42 39 38 27 24 4</canonical_bands>
                <polymorphic_bands>568 147 66 45 42 39 38 27 24 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCTCTAACCTTGCACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATGCATCAAGAGAAAGAGTCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTCTCTAACCTTGCACAAAAAACTATATTTTTGCTCCCGGTTTGCTGTGACATCCTTTAAACCTTTCTTCTTTTTCATCTTTTCTGTCAAATTTTGGGATTCTGTCTTTCCTCTTCCCTTCTTTTTTTTTGCCCCGTTTTTTGTGTGTTCTCCTTTTTTTCAGTTCTTCTGACGTTCTCATCTTTTCTTTCTGTGCGTTTCAGTTTTTTGTCAATCTCATGAGAATAGACTCTTTCTCTTGATGCATT</canonical_amplicon>
		<polymorphic_amplicon>ACTCTCTAACCTTGCACAAAAAACTATATTTTTGCTCCCGGTTTGCTGTGACATCCTTTRAACCTTTCTTCTTTTTCATCTTTTCTGTCAAATTTTGGGATTCTGTCTTTCCTCTTCCCTTCTTTTTTTTTGCCCCGTTTTTTGTGTGTTCTCCTTTTTTTCAGTTCTTCTGACGTTCTCATCTTTTCTTTCTGTGCGTTTCAGTTTTTTGTCAATCTCATGAGAATAGACTCTTTCTCTTGATGCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34784</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>467329</contig_pos>
        <strand></strand>
        <context>AGGTAGGAAG[A/C]TGCTCAGTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGGCTGAGCATTTCCAGGCTTGAGGTAGGGTGCACAGGAGAGGTAGGAAG</left_flank>
        <right_flank>TGCTCAGTACGAGGAAGGTACGGAACAATATTTGAAAACCAACCAAGAGG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGCACTCAATGATCCTTCAATCCCTTGGAATATTTTGGCTTGAGAGTGTGGCCACGGCTCTCAAATTCCTTCCAGGTGAAGGGGTAGTTGCACATGTTCTCGTAGCAATAGCAGAGCCAGATGTCCGAAGAGGGGACTCCCTTCAGATTGCTATCGACGTGCTAATAACAGAAAAGCCATTAAATTAAATGAAATTGAAGAATGTCGTTAAAATTTCAAACGCTCACCTGGAGGACGCAGTCGTCTCCCTTTGTCATGTTGACGATGTTAGGGATACGGGATGGGTGACGCAAGCCACCACCGAAAGATCCGATCCCGTCGGAGACTTCGTAGATGGCGGTGCAGAACTTCCGATGATGGACCGTCTCGACGACTGCAAAGTAGTCGTCGTATCCATAGCAGGAGAGGCCGACTACGGTAGAAGCCGCGAGGGAGAGAAGAAGGAAGTGGCTGAGCATTTCCAGGCTTGAGGTAGGGTGCACAGGAGAGGTAGGAAGATGCTCAGTACGAGGAAGGTACGGAACAATATTTGAAAACCAACCAAGAGGACTATTTATACTCCTCCCGTGACGGAATCGGCTCCTCCTTTTTTTATGAAGAACTTTGTTCCGTATAGGCTAAACTTATCTGATATCACCGTGTAAGCTCTGTTCTTTGTACCCAATGTTTATTTGGACTTGAATATGTACCAGCTTCTGTGCCTGGCACCATAAGCTTTATCCAGGGGATAAAAACAGATTTTGAGAAATTCTTCGCTCGTTTAATCCTGCTATGGTCTTATCCTTCTTACGTATCATTAACTTTGAGGAAAGTGTCACGTATTGTAACAAATAACAAAGTTCTATTCAAGTATATAAAATTTGAATAACAAGATTAACCTTATCACTAGAATCCGTACAAGCCGAAAACATTGATGATCTCATACATCTACATGATTGTTCAGAATTTCGAGGACTTTGGCTTTCATCCATTTCGATCGGAAATCTGTCCGTGACCTT</canonical>
            <polymorphic>GGAGCACTCAATGATCCTTCAATCCCTTGGAATATTTTGGCTTGAGAGTGTGGCCACGGCTCTCAAATTCCTTCCAGGTGAAGGGGTAGTTGCACATGTTCTCGTAGCAATAGCAGAGCCAGATGTCCGAAGAGGGGACTCCCTTCAGATTGCTATCGACGTGCTAATAACAGAAAAGCCATTAAATTAAATGAAATTGAAGAATGTCGTTAAAATTTCAAACGCTCACCTGGAGGACGCAGTCGTCTCCCTTTGTCATGTTGACGATGTTAGGGATACGGGATGGGTGACGCAAGCCACCACCGAAAGATCCGATCCCGTCGGAGACTTCGTAGATGGCGGTGCAGAACTTCCGATGATGGACCGTCTCGACGACTGCAAAGTAGTCGTCGTATCCATAGCAGGAGAGGCCGACTACGGTAGAAGCCGCGAGGGAGAGAAGAAGGAAGTGGCTGAGCATTTCCAGGCTTGAGGTAGGGTGCACAGGAGAGGTAGGAAGMTGCTCAGTACGAGGAAGGTACGGAACAATATTTGAAAACCAACCAAGAGGACTATTTATACTCCTCCCGTGACGGAATCGGCTCCTCCTTTTTTTATGAAGAACTTTGTTCCGTATAGGCTAAACTTATCTGATATCACCGTGTAAGCTCTGTTCTTTGTACCCAATGTTTATTTGGACTTGAATATGTACCAGCTTCTGTGCCTGGCACCATAAGCTTTATCCAGGGGATAAAAACAGATTTTGAGAAATTCTTCGCTCGTTTAATCCTGCTATGGTCTTATCCTTCTTACGTATCATTAACTTTGAGGAAAGTGTCACGTATTGTAACAAATAACAAAGTTCTATTCAAGTATATAAAATTTGAATAACAAGATTAACCTTATCACTAGAATCCGTACAAGCCGAAAACATTGATGATCTCATACATCTACATGATTGTTCAGAATTTCGAGGACTTTGGCTTTCATCCATTTCGATCGGAAATCTGTCCGTGACCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAGTAGTCGTCGTATCCATAG</pcr_primer_p1>
		<pcr_primer_p2>CTATACGGAACAAAGTTCTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CAAAGTAGTCGTCGTATCCATAGCAGGAGAGGCCGACTACGGTAGAAGCCGCGAGGGAGAGAAGAAGGAAGTGGCTGAGCATTTCCAGGCTTGAGGTAGGGTGCACAGGAGAGGTAGGAAGATGCTCAGTACGAGGAAGGTACGGAACAATATTTGAAAACCAACCAAGAGGACTATTTATACTCCTCCCGTGACGGAATCGGCTCCTCCTTTTTTTATGAAGAACTTTGTTCCGTATAG</canonical_amplicon>
		<polymorphic_amplicon>CAAAGTAGTCGTCGTATCCATAGCAGGAGAGGCCGACTACGGTAGAAGCCGCGAGGGAGAGAAGAAGGAAGTGGCTGAGCATTTCCAGGCTTGAGGTAGGGTGCACAGGAGAGGTAGGAAGMTGCTCAGTACGAGGAAGGTACGGAACAATATTTGAAAACCAACCAAGAGGACTATTTATACTCCTCCCGTGACGGAATCGGCTCCTCCTTTTTTTATGAAGAACTTTGTTCCGTATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34785</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>467359</contig_pos>
        <strand></strand>
        <context>ACGGAACAAT[A/G]TTTGAAAACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCACAGGAGAGGTAGGAAGATGCTCAGTACGAGGAAGGTACGGAACAAT</left_flank>
        <right_flank>TTTGAAAACCAACCAAGAGGACTATTTATACTCCTCCCGTGACGGAATCG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATATTTTGGCTTGAGAGTGTGGCCACGGCTCTCAAATTCCTTCCAGGTGAAGGGGTAGTTGCACATGTTCTCGTAGCAATAGCAGAGCCAGATGTCCGAAGAGGGGACTCCCTTCAGATTGCTATCGACGTGCTAATAACAGAAAAGCCATTAAATTAAATGAAATTGAAGAATGTCGTTAAAATTTCAAACGCTCACCTGGAGGACGCAGTCGTCTCCCTTTGTCATGTTGACGATGTTAGGGATACGGGATGGGTGACGCAAGCCACCACCGAAAGATCCGATCCCGTCGGAGACTTCGTAGATGGCGGTGCAGAACTTCCGATGATGGACCGTCTCGACGACTGCAAAGTAGTCGTCGTATCCATAGCAGGAGAGGCCGACTACGGTAGAAGCCGCGAGGGAGAGAAGAAGGAAGTGGCTGAGCATTTCCAGGCTTGAGGTAGGGTGCACAGGAGAGGTAGGAAGATGCTCAGTACGAGGAAGGTACGGAACAATATTTGAAAACCAACCAAGAGGACTATTTATACTCCTCCCGTGACGGAATCGGCTCCTCCTTTTTTTATGAAGAACTTTGTTCCGTATAGGCTAAACTTATCTGATATCACCGTGTAAGCTCTGTTCTTTGTACCCAATGTTTATTTGGACTTGAATATGTACCAGCTTCTGTGCCTGGCACCATAAGCTTTATCCAGGGGATAAAAACAGATTTTGAGAAATTCTTCGCTCGTTTAATCCTGCTATGGTCTTATCCTTCTTACGTATCATTAACTTTGAGGAAAGTGTCACGTATTGTAACAAATAACAAAGTTCTATTCAAGTATATAAAATTTGAATAACAAGATTAACCTTATCACTAGAATCCGTACAAGCCGAAAACATTGATGATCTCATACATCTACATGATTGTTCAGAATTTCGAGGACTTTGGCTTTCATCCATTTCGATCGGAAATCTGTCCGTGACCTTACATATGAAGTGAAGCAGGCTGAGAAAAAC</canonical>
            <polymorphic>AATATTTTGGCTTGAGAGTGTGGCCACGGCTCTCAAATTCCTTCCAGGTGAAGGGGTAGTTGCACATGTTCTCGTAGCAATAGCAGAGCCAGATGTCCGAAGAGGGGACTCCCTTCAGATTGCTATCGACGTGCTAATAACAGAAAAGCCATTAAATTAAATGAAATTGAAGAATGTCGTTAAAATTTCAAACGCTCACCTGGAGGACGCAGTCGTCTCCCTTTGTCATGTTGACGATGTTAGGGATACGGGATGGGTGACGCAAGCCACCACCGAAAGATCCGATCCCGTCGGAGACTTCGTAGATGGCGGTGCAGAACTTCCGATGATGGACCGTCTCGACGACTGCAAAGTAGTCGTCGTATCCATAGCAGGAGAGGCCGACTACGGTAGAAGCCGCGAGGGAGAGAAGAAGGAAGTGGCTGAGCATTTCCAGGCTTGAGGTAGGGTGCACAGGAGAGGTAGGAAGATGCTCAGTACGAGGAAGGTACGGAACAATRTTTGAAAACCAACCAAGAGGACTATTTATACTCCTCCCGTGACGGAATCGGCTCCTCCTTTTTTTATGAAGAACTTTGTTCCGTATAGGCTAAACTTATCTGATATCACCGTGTAAGCTCTGTTCTTTGTACCCAATGTTTATTTGGACTTGAATATGTACCAGCTTCTGTGCCTGGCACCATAAGCTTTATCCAGGGGATAAAAACAGATTTTGAGAAATTCTTCGCTCGTTTAATCCTGCTATGGTCTTATCCTTCTTACGTATCATTAACTTTGAGGAAAGTGTCACGTATTGTAACAAATAACAAAGTTCTATTCAAGTATATAAAATTTGAATAACAAGATTAACCTTATCACTAGAATCCGTACAAGCCGAAAACATTGATGATCTCATACATCTACATGATTGTTCAGAATTTCGAGGACTTTGGCTTTCATCCATTTCGATCGGAAATCTGTCCGTGACCTTACATATGAAGTGAAGCAGGCTGAGAAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 496 3</canonical_bands>
                <polymorphic_bands>997 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAGTAGTCGTCGTATCCATAG</pcr_primer_p1>
		<pcr_primer_p2>CTATACGGAACAAAGTTCTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CAAAGTAGTCGTCGTATCCATAGCAGGAGAGGCCGACTACGGTAGAAGCCGCGAGGGAGAGAAGAAGGAAGTGGCTGAGCATTTCCAGGCTTGAGGTAGGGTGCACAGGAGAGGTAGGAAGATGCTCAGTACGAGGAAGGTACGGAACAATATTTGAAAACCAACCAAGAGGACTATTTATACTCCTCCCGTGACGGAATCGGCTCCTCCTTTTTTTATGAAGAACTTTGTTCCGTATAG</canonical_amplicon>
		<polymorphic_amplicon>CAAAGTAGTCGTCGTATCCATAGCAGGAGAGGCCGACTACGGTAGAAGCCGCGAGGGAGAGAAGAAGGAAGTGGCTGAGCATTTCCAGGCTTGAGGTAGGGTGCACAGGAGAGGTAGGAAGATGCTCAGTACGAGGAAGGTACGGAACAATRTTTGAAAACCAACCAAGAGGACTATTTATACTCCTCCCGTGACGGAATCGGCTCCTCCTTTTTTTATGAAGAACTTTGTTCCGTATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34786</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>467450</contig_pos>
        <strand></strand>
        <context>CCGTATAGGC[T/G]AAACTTATCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GACGGAATCGGCTCCTCCTTTTTTTATGAAGAACTTTGTTCCGTATAGGC</left_flank>
        <right_flank>AAACTTATCTGATATCACCGTGTAAGCTCTGTTCTTTGTACCCAATGTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGTCCGAAGAGGGGACTCCCTTCAGATTGCTATCGACGTGCTAATAACAGAAAAGCCATTAAATTAAATGAAATTGAAGAATGTCGTTAAAATTTCAAACGCTCACCTGGAGGACGCAGTCGTCTCCCTTTGTCATGTTGACGATGTTAGGGATACGGGATGGGTGACGCAAGCCACCACCGAAAGATCCGATCCCGTCGGAGACTTCGTAGATGGCGGTGCAGAACTTCCGATGATGGACCGTCTCGACGACTGCAAAGTAGTCGTCGTATCCATAGCAGGAGAGGCCGACTACGGTAGAAGCCGCGAGGGAGAGAAGAAGGAAGTGGCTGAGCATTTCCAGGCTTGAGGTAGGGTGCACAGGAGAGGTAGGAAGATGCTCAGTACGAGGAAGGTACGGAACAATATTTGAAAACCAACCAAGAGGACTATTTATACTCCTCCCGTGACGGAATCGGCTCCTCCTTTTTTTATGAAGAACTTTGTTCCGTATAGGCTAAACTTATCTGATATCACCGTGTAAGCTCTGTTCTTTGTACCCAATGTTTATTTGGACTTGAATATGTACCAGCTTCTGTGCCTGGCACCATAAGCTTTATCCAGGGGATAAAAACAGATTTTGAGAAATTCTTCGCTCGTTTAATCCTGCTATGGTCTTATCCTTCTTACGTATCATTAACTTTGAGGAAAGTGTCACGTATTGTAACAAATAACAAAGTTCTATTCAAGTATATAAAATTTGAATAACAAGATTAACCTTATCACTAGAATCCGTACAAGCCGAAAACATTGATGATCTCATACATCTACATGATTGTTCAGAATTTCGAGGACTTTGGCTTTCATCCATTTCGATCGGAAATCTGTCCGTGACCTTACATATGAAGTGAAGCAGGCTGAGAAAAACACACGACGGTTTCTTGATGGTTTTTGTATGTTCTCACCGGCTGGAAACCGAGAAGCGCTACTCAGGAAGGAAGAAGCACTTCTCAGGAAGC</canonical>
            <polymorphic>GATGTCCGAAGAGGGGACTCCCTTCAGATTGCTATCGACGTGCTAATAACAGAAAAGCCATTAAATTAAATGAAATTGAAGAATGTCGTTAAAATTTCAAACGCTCACCTGGAGGACGCAGTCGTCTCCCTTTGTCATGTTGACGATGTTAGGGATACGGGATGGGTGACGCAAGCCACCACCGAAAGATCCGATCCCGTCGGAGACTTCGTAGATGGCGGTGCAGAACTTCCGATGATGGACCGTCTCGACGACTGCAAAGTAGTCGTCGTATCCATAGCAGGAGAGGCCGACTACGGTAGAAGCCGCGAGGGAGAGAAGAAGGAAGTGGCTGAGCATTTCCAGGCTTGAGGTAGGGTGCACAGGAGAGGTAGGAAGATGCTCAGTACGAGGAAGGTACGGAACAATATTTGAAAACCAACCAAGAGGACTATTTATACTCCTCCCGTGACGGAATCGGCTCCTCCTTTTTTTATGAAGAACTTTGTTCCGTATAGGCKAAACTTATCTGATATCACCGTGTAAGCTCTGTTCTTTGTACCCAATGTTTATTTGGACTTGAATATGTACCAGCTTCTGTGCCTGGCACCATAAGCTTTATCCAGGGGATAAAAACAGATTTTGAGAAATTCTTCGCTCGTTTAATCCTGCTATGGTCTTATCCTTCTTACGTATCATTAACTTTGAGGAAAGTGTCACGTATTGTAACAAATAACAAAGTTCTATTCAAGTATATAAAATTTGAATAACAAGATTAACCTTATCACTAGAATCCGTACAAGCCGAAAACATTGATGATCTCATACATCTACATGATTGTTCAGAATTTCGAGGACTTTGGCTTTCATCCATTTCGATCGGAAATCTGTCCGTGACCTTACATATGAAGTGAAGCAGGCTGAGAAAAACACACGACGGTTTCTTGATGGTTTTTGTATGTTCTCACCGGCTGGAAACCGAGAAGCGCTACTCAGGAAGGAAGAAGCACTTCTCAGGAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>187 118 114 114 59 57 57 51 51 47 38 28 26 22 16 15</canonical_bands>
                <polymorphic_bands>187 118 114 114 66 59 57 57 51 51 47 26 22 16 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACCAACCAAGAGGACTATTTAT</pcr_primer_p1>
		<pcr_primer_p2>AGGATAAGACCATAGCAGGATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACCAACCAAGAGGACTATTTATACTCCTCCCGTGACGGAATCGGCTCCTCCTTTTTTTATGAAGAACTTTGTTCCGTATAGGCTAAACTTATCTGATATCACCGTGTAAGCTCTGTTCTTTGTACCCAATGTTTATTTGGACTTGAATATGTACCAGCTTCTGTGCCTGGCACCATAAGCTTTATCCAGGGGATAAAAACAGATTTTGAGAAATTCTTCGCTCGTTTAATCCTGCTATGGTCTTATCCT</canonical_amplicon>
		<polymorphic_amplicon>AACCAACCAAGAGGACTATTTATACTCCTCCCGTGACGGAATCGGCTCCTCCTTTTTTTATGAAGAACTTTGTTCCGTATAGGCKAAACTTATCTGATATCACCGTGTAAGCTCTGTTCTTTGTACCCAATGTTTATTTGGACTTGAATATGTACCAGCTTCTGTGCCTGGCACCATAAGCTTTATCCAGGGGATAAAAACAGATTTTGAGAAATTCTTCGCTCGTTTAATCCTGCTATGGTCTTATCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34787</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>467508</contig_pos>
        <strand></strand>
        <context>TTTATTTGGA[C/G]TTGAATATGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCTGATATCACCGTGTAAGCTCTGTTCTTTGTACCCAATGTTTATTTGGA</left_flank>
        <right_flank>TTGAATATGTACCAGCTTCTGTGCCTGGCACCATAAGCTTTATCCAGGGG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTAAATTAAATGAAATTGAAGAATGTCGTTAAAATTTCAAACGCTCACCTGGAGGACGCAGTCGTCTCCCTTTGTCATGTTGACGATGTTAGGGATACGGGATGGGTGACGCAAGCCACCACCGAAAGATCCGATCCCGTCGGAGACTTCGTAGATGGCGGTGCAGAACTTCCGATGATGGACCGTCTCGACGACTGCAAAGTAGTCGTCGTATCCATAGCAGGAGAGGCCGACTACGGTAGAAGCCGCGAGGGAGAGAAGAAGGAAGTGGCTGAGCATTTCCAGGCTTGAGGTAGGGTGCACAGGAGAGGTAGGAAGATGCTCAGTACGAGGAAGGTACGGAACAATATTTGAAAACCAACCAAGAGGACTATTTATACTCCTCCCGTGACGGAATCGGCTCCTCCTTTTTTTATGAAGAACTTTGTTCCGTATAGGCTAAACTTATCTGATATCACCGTGTAAGCTCTGTTCTTTGTACCCAATGTTTATTTGGACTTGAATATGTACCAGCTTCTGTGCCTGGCACCATAAGCTTTATCCAGGGGATAAAAACAGATTTTGAGAAATTCTTCGCTCGTTTAATCCTGCTATGGTCTTATCCTTCTTACGTATCATTAACTTTGAGGAAAGTGTCACGTATTGTAACAAATAACAAAGTTCTATTCAAGTATATAAAATTTGAATAACAAGATTAACCTTATCACTAGAATCCGTACAAGCCGAAAACATTGATGATCTCATACATCTACATGATTGTTCAGAATTTCGAGGACTTTGGCTTTCATCCATTTCGATCGGAAATCTGTCCGTGACCTTACATATGAAGTGAAGCAGGCTGAGAAAAACACACGACGGTTTCTTGATGGTTTTTGTATGTTCTCACCGGCTGGAAACCGAGAAGCGCTACTCAGGAAGGAAGAAGCACTTCTCAGGAAGCAAAAGAAGAAGACGAAAACCATGGAAAATGGTTTTTCGTCGGTTGTTGAAAAATTAAG</canonical>
            <polymorphic>CATTAAATTAAATGAAATTGAAGAATGTCGTTAAAATTTCAAACGCTCACCTGGAGGACGCAGTCGTCTCCCTTTGTCATGTTGACGATGTTAGGGATACGGGATGGGTGACGCAAGCCACCACCGAAAGATCCGATCCCGTCGGAGACTTCGTAGATGGCGGTGCAGAACTTCCGATGATGGACCGTCTCGACGACTGCAAAGTAGTCGTCGTATCCATAGCAGGAGAGGCCGACTACGGTAGAAGCCGCGAGGGAGAGAAGAAGGAAGTGGCTGAGCATTTCCAGGCTTGAGGTAGGGTGCACAGGAGAGGTAGGAAGATGCTCAGTACGAGGAAGGTACGGAACAATATTTGAAAACCAACCAAGAGGACTATTTATACTCCTCCCGTGACGGAATCGGCTCCTCCTTTTTTTATGAAGAACTTTGTTCCGTATAGGCTAAACTTATCTGATATCACCGTGTAAGCTCTGTTCTTTGTACCCAATGTTTATTTGGASTTGAATATGTACCAGCTTCTGTGCCTGGCACCATAAGCTTTATCCAGGGGATAAAAACAGATTTTGAGAAATTCTTCGCTCGTTTAATCCTGCTATGGTCTTATCCTTCTTACGTATCATTAACTTTGAGGAAAGTGTCACGTATTGTAACAAATAACAAAGTTCTATTCAAGTATATAAAATTTGAATAACAAGATTAACCTTATCACTAGAATCCGTACAAGCCGAAAACATTGATGATCTCATACATCTACATGATTGTTCAGAATTTCGAGGACTTTGGCTTTCATCCATTTCGATCGGAAATCTGTCCGTGACCTTACATATGAAGTGAAGCAGGCTGAGAAAAACACACGACGGTTTCTTGATGGTTTTTGTATGTTCTCACCGGCTGGAAACCGAGAAGCGCTACTCAGGAAGGAAGAAGCACTTCTCAGGAAGCAAAAGAAGAAGACGAAAACCATGGAAAATGGTTTTTCGTCGGTTGTTGAAAAATTAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCAACCAAGAGGACTATTTAT</pcr_primer_p1>
		<pcr_primer_p2>AGGATAAGACCATAGCAGGATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACCAACCAAGAGGACTATTTATACTCCTCCCGTGACGGAATCGGCTCCTCCTTTTTTTATGAAGAACTTTGTTCCGTATAGGCTAAACTTATCTGATATCACCGTGTAAGCTCTGTTCTTTGTACCCAATGTTTATTTGGACTTGAATATGTACCAGCTTCTGTGCCTGGCACCATAAGCTTTATCCAGGGGATAAAAACAGATTTTGAGAAATTCTTCGCTCGTTTAATCCTGCTATGGTCTTATCCT</canonical_amplicon>
		<polymorphic_amplicon>AACCAACCAAGAGGACTATTTATACTCCTCCCGTGACGGAATCGGCTCCTCCTTTTTTTATGAAGAACTTTGTTCCGTATAGGCTAAACTTATCTGATATCACCGTGTAAGCTCTGTTCTTTGTACCCAATGTTTATTTGGASTTGAATATGTACCAGCTTCTGTGCCTGGCACCATAAGCTTTATCCAGGGGATAAAAACAGATTTTGAGAAATTCTTCGCTCGTTTAATCCTGCTATGGTCTTATCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34788</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>467681</contig_pos>
        <strand></strand>
        <context>TTCTATTCAA[G/A]TATATAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACTTTGAGGAAAGTGTCACGTATTGTAACAAATAACAAAGTTCTATTCAA</left_flank>
        <right_flank>TATATAAAATTTGAATAACAAGATTAACCTTATCACTAGAATCCGTACAA</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGATGATGGACCGTCTCGACGACTGCAAAGTAGTCGTCGTATCCATAGCAGGAGAGGCCGACTACGGTAGAAGCCGCGAGGGAGAGAAGAAGGAAGTGGCTGAGCATTTCCAGGCTTGAGGTAGGGTGCACAGGAGAGGTAGGAAGATGCTCAGTACGAGGAAGGTACGGAACAATATTTGAAAACCAACCAAGAGGACTATTTATACTCCTCCCGTGACGGAATCGGCTCCTCCTTTTTTTATGAAGAACTTTGTTCCGTATAGGCTAAACTTATCTGATATCACCGTGTAAGCTCTGTTCTTTGTACCCAATGTTTATTTGGACTTGAATATGTACCAGCTTCTGTGCCTGGCACCATAAGCTTTATCCAGGGGATAAAAACAGATTTTGAGAAATTCTTCGCTCGTTTAATCCTGCTATGGTCTTATCCTTCTTACGTATCATTAACTTTGAGGAAAGTGTCACGTATTGTAACAAATAACAAAGTTCTATTCAAGTATATAAAATTTGAATAACAAGATTAACCTTATCACTAGAATCCGTACAAGCCGAAAACATTGATGATCTCATACATCTACATGATTGTTCAGAATTTCGAGGACTTTGGCTTTCATCCATTTCGATCGGAAATCTGTCCGTGACCTTACATATGAAGTGAAGCAGGCTGAGAAAAACACACGACGGTTTCTTGATGGTTTTTGTATGTTCTCACCGGCTGGAAACCGAGAAGCGCTACTCAGGAAGGAAGAAGCACTTCTCAGGAAGCAAAAGAAGAAGACGAAAACCATGGAAAATGGTTTTTCGTCGGTTGTTGAAAAATTAAGTCGGTTTTTGACTCTTTCGGCTTCTTTAAGAGTGAAATTTACATTTTCCGGCCATTCTCGTCATCAATGAGACAATTATCAGGGGTTTGCAAAAGTAATGCGCGTTTTTGATGCAACTTCCTTTTATTGTAAAACCAAAACAAGATATCATCAATCAATAAGATATTCTCCAT</canonical>
            <polymorphic>CCGATGATGGACCGTCTCGACGACTGCAAAGTAGTCGTCGTATCCATAGCAGGAGAGGCCGACTACGGTAGAAGCCGCGAGGGAGAGAAGAAGGAAGTGGCTGAGCATTTCCAGGCTTGAGGTAGGGTGCACAGGAGAGGTAGGAAGATGCTCAGTACGAGGAAGGTACGGAACAATATTTGAAAACCAACCAAGAGGACTATTTATACTCCTCCCGTGACGGAATCGGCTCCTCCTTTTTTTATGAAGAACTTTGTTCCGTATAGGCTAAACTTATCTGATATCACCGTGTAAGCTCTGTTCTTTGTACCCAATGTTTATTTGGACTTGAATATGTACCAGCTTCTGTGCCTGGCACCATAAGCTTTATCCAGGGGATAAAAACAGATTTTGAGAAATTCTTCGCTCGTTTAATCCTGCTATGGTCTTATCCTTCTTACGTATCATTAACTTTGAGGAAAGTGTCACGTATTGTAACAAATAACAAAGTTCTATTCAARTATATAAAATTTGAATAACAAGATTAACCTTATCACTAGAATCCGTACAAGCCGAAAACATTGATGATCTCATACATCTACATGATTGTTCAGAATTTCGAGGACTTTGGCTTTCATCCATTTCGATCGGAAATCTGTCCGTGACCTTACATATGAAGTGAAGCAGGCTGAGAAAAACACACGACGGTTTCTTGATGGTTTTTGTATGTTCTCACCGGCTGGAAACCGAGAAGCGCTACTCAGGAAGGAAGAAGCACTTCTCAGGAAGCAAAAGAAGAAGACGAAAACCATGGAAAATGGTTTTTCGTCGGTTGTTGAAAAATTAAGTCGGTTTTTGACTCTTTCGGCTTCTTTAAGAGTGAAATTTACATTTTCCGGCCATTCTCGTCATCAATGAGACAATTATCAGGGGTTTGCAAAAGTAATGCGCGTTTTTGATGCAACTTCCTTTTATTGTAAAACCAAAACAAGATATCATCAATCAATAAGATATTCTCCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAATCCTGCTATGGTCTTATC</pcr_primer_p1>
		<pcr_primer_p2>ATATGTAAGGTCACGGACAGAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTAATCCTGCTATGGTCTTATCCTTCTTACGTATCATTAACTTTGAGGAAAGTGTCACGTATTGTAACAAATAACAAAGTTCTATTCAAGTATATAAAATTTGAATAACAAGATTAACCTTATCACTAGAATCCGTACAAGCCGAAAACATTGATGATCTCATACATCTACATGATTGTTCAGAATTTCGAGGACTTTGGCTTTCATCCATTTCGATCGGAAATCTGTCCGTGACCTTACATAT</canonical_amplicon>
		<polymorphic_amplicon>TTTAATCCTGCTATGGTCTTATCCTTCTTACGTATCATTAACTTTGAGGAAAGTGTCACGTATTGTAACAAATAACAAAGTTCTATTCAARTATATAAAATTTGAATAACAAGATTAACCTTATCACTAGAATCCGTACAAGCCGAAAACATTGATGATCTCATACATCTACATGATTGTTCAGAATTTCGAGGACTTTGGCTTTCATCCATTTCGATCGGAAATCTGTCCGTGACCTTACATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34789</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>472621</contig_pos>
        <strand>+</strand>
        <context>AATACCATGA[A/T]AAAAAATGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACAACATGGTATTTGTAGTACAACCGATGGTGCGACAACAATACCATGA</left_flank>
        <right_flank>AAAAAATGAATCCTGGATTGGGCTCCATGAATCCAATAATACGTGCTCCA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCAACCTAGACTTTTGCAACTACCAAGGCCGGGAACTCATCTTGTGGAGGTTCAAGTAATTATCATACTGACATTCGTGCCAATCAGTCCCAGAAAAAAAATTAATCTAATAATGAGAAGGCCAACATTGTTGCATTTCAATCACCAAAAATGAAAAAGCCGTAAGTTTATGTGGAAATGAAAAAATGGTATCTATAAACAATGAATTTTCAGTCACCACGGCTGCCACAGCTTGAAATGTTGCTCCTACTCTTTCTCCAATTGTGAAATCTGTTATTCTAGATCAGCTGGTCCGACAACTACACCATTGACGATGCTCAAAGTGCCAACACAACAAACTAACTATTATGCCAACGCCTACTGCTGTTGCTAAGATTCTGCAACTACCAAAGCTGGTTCAAAAAAACTGCCGACGCTTGGAATATTTCTCCAGCTCTTGCTCCAATTGAACAACATGGTATTTGTAGTACAACCGATGGTGCGACAACAATACCATGATAAAAAATGAATCCTGGATTGGGCTCCATGAATCCAATAATACGTGCTCCAGGAGCATGAGTAAGTTTTTCCAAAGCAGTTTTTCAAAAAAAAAAAAGAAGATTCTCAGCTTTCTGGAACCAACTAGAATTTCCTGATCCCGACTACTGTTGTGACCCATCGTTCGGCTGCTGTTGTCACTTCAGAAGGCCATGCCCACATGTCATGAAGGAGAAAATGTATCATTAGCTCGTACGTCAACAGACAGGGAAGGTGAGCCTAGAGAGCACCAGGAACGTCTTGTTCGTGAAGTTGAGAAGCGACAAGACGGAAAAACCCACATCGCTGAGCAGAAACAAATCCGTGAGGAGCAGGAACGACAAGTTAAAATCAATGCAACGCATCCGAAAAAAGAACAAAGGATTTTCAAAAGATCAAATCAACAAGTGAGTTTTCTTTGTTCCGAATTAAATTGACCCCGTTCCACCACGTTCAAGGTACTTCCTACTGATGCATCCGGGG</canonical>
            <polymorphic>GGCAACCTAGACTTTTGCAACTACCAAGGCCGGGAACTCATCTTGTGGAGGTTCAAGTAATTATCATACTGACATTCGTGCCAATCAGTCCCAGAAAAAAAATTAATCTAATAATGAGAAGGCCAACATTGTTGCATTTCAATCACCAAAAATGAAAAAGCCGTAAGTTTATGTGGAAATGAAAAAATGGTATCTATAAACAATGAATTTTCAGTCACCACGGCTGCCACAGCTTGAAATGTTGCTCCTACTCTTTCTCCAATTGTGAAATCTGTTATTCTAGATCAGCTGGTCCGACAACTACACCATTGACGATGCTCAAAGTGCCAACACAACAAACTAACTATTATGCCAACGCCTACTGCTGTTGCTAAGATTCTGCAACTACCAAAGCTGGTTCAAAAAAACTGCCGACGCTTGGAATATTTCTCCAGCTCTTGCTCCAATTGAACAACATGGTATTTGTAGTACAACCGATGGTGCGACAACAATACCATGAWAAAAAATGAATCCTGGATTGGGCTCCATGAATCCAATAATACGTGCTCCAGGAGCATGAGTAAGTTTTTCCAAAGCAGTTTTTCAAAAAAAAAAAAGAAGATTCTCAGCTTTCTGGAACCAACTAGAATTTCCTGATCCCGACTACTGTTGTGACCCATCGTTCGGCTGCTGTTGTCACTTCAGAAGGCCATGCCCACATGTCATGAAGGAGAAAATGTATCATTAGCTCGTACGTCAACAGACAGGGAAGGTGAGCCTAGAGAGCACCAGGAACGTCTTGTTCGTGAAGTTGAGAAGCGACAAGACGGAAAAACCCACATCGCTGAGCAGAAACAAATCCGTGAGGAGCAGGAACGACAAGTTAAAATCAATGCAACGCATCCGAAAAAAGAACAAAGGATTTTCAAAAGATCAAATCAACAAGTGAGTTTTCTTTGTTCCGAATTAAATTGACCCCGTTCCACCACGTTCAAGGTACTTCCTACTGATGCATCCGGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCAACACAACAAACTAACTATT</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTGGAAAAACTTACTCAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCCAACACAACAAACTAACTATTATGCCAACGCCTACTGCTGTTGCTAAGATTCTGCAACTACCAAAGCTGGTTCAAAAAAACTGCCGACGCTTGGAATATTTCTCCAGCTCTTGCTCCAATTGAACAACATGGTATTTGTAGTACAACCGATGGTGCGACAACAATACCATGATAAAAAATGAATCCTGGATTGGGCTCCATGAATCCAATAATACGTGCTCCAGGAGCATGAGTAAGTTTTTCCAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>GCCAACACAACAAACTAACTATTATGCCAACGCCTACTGCTGTTGCTAAGATTCTGCAACTACCAAAGCTGGTTCAAAAAAACTGCCGACGCTTGGAATATTTCTCCAGCTCTTGCTCCAATTGAACAACATGGTATTTGTAGTACAACCGATGGTGCGACAACAATACCATGAWAAAAAATGAATCCTGGATTGGGCTCCATGAATCCAATAATACGTGCTCCAGGAGCATGAGTAAGTTTTTCCAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34790</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>472706</contig_pos>
        <strand>+</strand>
        <context>GCAGTTTTTC[C/G]AAAAAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATAATACGTGCTCCAGGAGCATGAGTAAGTTTTTCCAAAGCAGTTTTTC</left_flank>
        <right_flank>AAAAAAAAAAAGAAGATTCTCAGCTTTCTGGAACCAACTAGAATTTCCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTCCCAGAAAAAAAATTAATCTAATAATGAGAAGGCCAACATTGTTGCATTTCAATCACCAAAAATGAAAAAGCCGTAAGTTTATGTGGAAATGAAAAAATGGTATCTATAAACAATGAATTTTCAGTCACCACGGCTGCCACAGCTTGAAATGTTGCTCCTACTCTTTCTCCAATTGTGAAATCTGTTATTCTAGATCAGCTGGTCCGACAACTACACCATTGACGATGCTCAAAGTGCCAACACAACAAACTAACTATTATGCCAACGCCTACTGCTGTTGCTAAGATTCTGCAACTACCAAAGCTGGTTCAAAAAAACTGCCGACGCTTGGAATATTTCTCCAGCTCTTGCTCCAATTGAACAACATGGTATTTGTAGTACAACCGATGGTGCGACAACAATACCATGATAAAAAATGAATCCTGGATTGGGCTCCATGAATCCAATAATACGTGCTCCAGGAGCATGAGTAAGTTTTTCCAAAGCAGTTTTTCAAAAAAAAAAAAGAAGATTCTCAGCTTTCTGGAACCAACTAGAATTTCCTGATCCCGACTACTGTTGTGACCCATCGTTCGGCTGCTGTTGTCACTTCAGAAGGCCATGCCCACATGTCATGAAGGAGAAAATGTATCATTAGCTCGTACGTCAACAGACAGGGAAGGTGAGCCTAGAGAGCACCAGGAACGTCTTGTTCGTGAAGTTGAGAAGCGACAAGACGGAAAAACCCACATCGCTGAGCAGAAACAAATCCGTGAGGAGCAGGAACGACAAGTTAAAATCAATGCAACGCATCCGAAAAAAGAACAAAGGATTTTCAAAAGATCAAATCAACAAGTGAGTTTTCTTTGTTCCGAATTAAATTGACCCCGTTCCACCACGTTCAAGGTACTTCCTACTGATGCATCCGGGGTACACGTCTACCCACAAATAGTGTCGGACGAAACAAGTACCGTCAAACCAATTCAAGCAGTGCATGGATCAGGTGGAATCAGCTG</canonical>
            <polymorphic>CAGTCCCAGAAAAAAAATTAATCTAATAATGAGAAGGCCAACATTGTTGCATTTCAATCACCAAAAATGAAAAAGCCGTAAGTTTATGTGGAAATGAAAAAATGGTATCTATAAACAATGAATTTTCAGTCACCACGGCTGCCACAGCTTGAAATGTTGCTCCTACTCTTTCTCCAATTGTGAAATCTGTTATTCTAGATCAGCTGGTCCGACAACTACACCATTGACGATGCTCAAAGTGCCAACACAACAAACTAACTATTATGCCAACGCCTACTGCTGTTGCTAAGATTCTGCAACTACCAAAGCTGGTTCAAAAAAACTGCCGACGCTTGGAATATTTCTCCAGCTCTTGCTCCAATTGAACAACATGGTATTTGTAGTACAACCGATGGTGCGACAACAATACCATGATAAAAAATGAATCCTGGATTGGGCTCCATGAATCCAATAATACGTGCTCCAGGAGCATGAGTAAGTTTTTCCAAAGCAGTTTTTCSAAAAAAAAAAAGAAGATTCTCAGCTTTCTGGAACCAACTAGAATTTCCTGATCCCGACTACTGTTGTGACCCATCGTTCGGCTGCTGTTGTCACTTCAGAAGGCCATGCCCACATGTCATGAAGGAGAAAATGTATCATTAGCTCGTACGTCAACAGACAGGGAAGGTGAGCCTAGAGAGCACCAGGAACGTCTTGTTCGTGAAGTTGAGAAGCGACAAGACGGAAAAACCCACATCGCTGAGCAGAAACAAATCCGTGAGGAGCAGGAACGACAAGTTAAAATCAATGCAACGCATCCGAAAAAAGAACAAAGGATTTTCAAAAGATCAAATCAACAAGTGAGTTTTCTTTGTTCCGAATTAAATTGACCCCGTTCCACCACGTTCAAGGTACTTCCTACTGATGCATCCGGGGTACACGTCTACCCACAAATAGTGTCGGACGAAACAAGTACCGTCAAACCAATTCAAGCAGTGCATGGATCAGGTGGAATCAGCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTGAACAACATGGTATTTG</pcr_primer_p1>
		<pcr_primer_p2>CCTTCTGAAGTGACAACAGC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CAATTGAACAACATGGTATTTGTAGTACAACCGATGGTGCGACAACAATACCATGATAAAAAATGAATCCTGGATTGGGCTCCATGAATCCAATAATACGTGCTCCAGGAGCATGAGTAAGTTTTTCCAAAGCAGTTTTTCAAAAAAAAAAAAGAAGATTCTCAGCTTTCTGGAACCAACTAGAATTTCCTGATCCCGACTACTGTTGTGACCCATCGTTCGGCTGCTGTTGTCACTTCAGAAGG</canonical_amplicon>
		<polymorphic_amplicon>CAATTGAACAACATGGTATTTGTAGTACAACCGATGGTGCGACAACAATACCATGATAAAAAATGAATCCTGGATTGGGCTCCATGAATCCAATAATACGTGCTCCAGGAGCATGAGTAAGTTTTTCCAAAGCAGTTTTTCSAAAAAAAAAAAGAAGATTCTCAGCTTTCTGGAACCAACTAGAATTTCCTGATCCCGACTACTGTTGTGACCCATCGTTCGGCTGCTGTTGTCACTTCAGAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34791</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>472725</contig_pos>
        <strand></strand>
        <context>AAAGAAGATT[C/T]TCAGCTTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCATGAGTAAGTTTTTCCAAAGCAGTTTTTCAAAAAAAAAAAAGAAGATT</left_flank>
        <right_flank>TCAGCTTTCTGGAACCAACTAGAATTTCCTGATCCCGACTACTGTTGTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCTAATAATGAGAAGGCCAACATTGTTGCATTTCAATCACCAAAAATGAAAAAGCCGTAAGTTTATGTGGAAATGAAAAAATGGTATCTATAAACAATGAATTTTCAGTCACCACGGCTGCCACAGCTTGAAATGTTGCTCCTACTCTTTCTCCAATTGTGAAATCTGTTATTCTAGATCAGCTGGTCCGACAACTACACCATTGACGATGCTCAAAGTGCCAACACAACAAACTAACTATTATGCCAACGCCTACTGCTGTTGCTAAGATTCTGCAACTACCAAAGCTGGTTCAAAAAAACTGCCGACGCTTGGAATATTTCTCCAGCTCTTGCTCCAATTGAACAACATGGTATTTGTAGTACAACCGATGGTGCGACAACAATACCATGATAAAAAATGAATCCTGGATTGGGCTCCATGAATCCAATAATACGTGCTCCAGGAGCATGAGTAAGTTTTTCCAAAGCAGTTTTTCAAAAAAAAAAAAGAAGATTCTCAGCTTTCTGGAACCAACTAGAATTTCCTGATCCCGACTACTGTTGTGACCCATCGTTCGGCTGCTGTTGTCACTTCAGAAGGCCATGCCCACATGTCATGAAGGAGAAAATGTATCATTAGCTCGTACGTCAACAGACAGGGAAGGTGAGCCTAGAGAGCACCAGGAACGTCTTGTTCGTGAAGTTGAGAAGCGACAAGACGGAAAAACCCACATCGCTGAGCAGAAACAAATCCGTGAGGAGCAGGAACGACAAGTTAAAATCAATGCAACGCATCCGAAAAAAGAACAAAGGATTTTCAAAAGATCAAATCAACAAGTGAGTTTTCTTTGTTCCGAATTAAATTGACCCCGTTCCACCACGTTCAAGGTACTTCCTACTGATGCATCCGGGGTACACGTCTACCCACAAATAGTGTCGGACGAAACAAGTACCGTCAAACCAATTCAAGCAGTGCATGGATCAGGTGGAATCAGCTGATGCTTCCGGAGCTGCTTC</canonical>
            <polymorphic>AATCTAATAATGAGAAGGCCAACATTGTTGCATTTCAATCACCAAAAATGAAAAAGCCGTAAGTTTATGTGGAAATGAAAAAATGGTATCTATAAACAATGAATTTTCAGTCACCACGGCTGCCACAGCTTGAAATGTTGCTCCTACTCTTTCTCCAATTGTGAAATCTGTTATTCTAGATCAGCTGGTCCGACAACTACACCATTGACGATGCTCAAAGTGCCAACACAACAAACTAACTATTATGCCAACGCCTACTGCTGTTGCTAAGATTCTGCAACTACCAAAGCTGGTTCAAAAAAACTGCCGACGCTTGGAATATTTCTCCAGCTCTTGCTCCAATTGAACAACATGGTATTTGTAGTACAACCGATGGTGCGACAACAATACCATGATAAAAAATGAATCCTGGATTGGGCTCCATGAATCCAATAATACGTGCTCCAGGAGCATGAGTAAGTTTTTCCAAAGCAGTTTTTCAAAAAAAAAAAAGAAGATTYTCAGCTTTCTGGAACCAACTAGAATTTCCTGATCCCGACTACTGTTGTGACCCATCGTTCGGCTGCTGTTGTCACTTCAGAAGGCCATGCCCACATGTCATGAAGGAGAAAATGTATCATTAGCTCGTACGTCAACAGACAGGGAAGGTGAGCCTAGAGAGCACCAGGAACGTCTTGTTCGTGAAGTTGAGAAGCGACAAGACGGAAAAACCCACATCGCTGAGCAGAAACAAATCCGTGAGGAGCAGGAACGACAAGTTAAAATCAATGCAACGCATCCGAAAAAAGAACAAAGGATTTTCAAAAGATCAAATCAACAAGTGAGTTTTCTTTGTTCCGAATTAAATTGACCCCGTTCCACCACGTTCAAGGTACTTCCTACTGATGCATCCGGGGTACACGTCTACCCACAAATAGTGTCGGACGAAACAAGTACCGTCAAACCAATTCAAGCAGTGCATGGATCAGGTGGAATCAGCTGATGCTTCCGGAGCTGCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>280 267 233 220</canonical_bands>
                <polymorphic_bands>453 280 267</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>476 271 133 71 28 21</canonical_bands>
                <polymorphic_bands>547 271 133 28 21</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>476 271 133 71 28 21</canonical_bands>
                <polymorphic_bands>547 271 133 28 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGGAGCATGAGTAAGTTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CTTCTCAACTTCACGAACAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGGAGCATGAGTAAGTTTTTCCAAAGCAGTTTTTCAAAAAAAAAAAAGAAGATTCTCAGCTTTCTGGAACCAACTAGAATTTCCTGATCCCGACTACTGTTGTGACCCATCGTTCGGCTGCTGTTGTCACTTCAGAAGGCCATGCCCACATGTCATGAAGGAGAAAATGTATCATTAGCTCGTACGTCAACAGACAGGGAAGGTGAGCCTAGAGAGCACCAGGAACGTCTTGTTCGTGAAGTTGAGAAG</canonical_amplicon>
		<polymorphic_amplicon>CAGGAGCATGAGTAAGTTTTTCCAAAGCAGTTTTTCAAAAAAAAAAAAGAAGATTYTCAGCTTTCTGGAACCAACTAGAATTTCCTGATCCCGACTACTGTTGTGACCCATCGTTCGGCTGCTGTTGTCACTTCAGAAGGCCATGCCCACATGTCATGAAGGAGAAAATGTATCATTAGCTCGTACGTCAACAGACAGGGAAGGTGAGCCTAGAGAGCACCAGGAACGTCTTGTTCGTGAAGTTGAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34792</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>472736</contig_pos>
        <strand></strand>
        <context>TCAGCTTTCT[G/C]GAACCAACTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TTTTTCCAAAGCAGTTTTTCAAAAAAAAAAAAGAAGATTCTCAGCTTTCT</left_flank>
        <right_flank>GAACCAACTAGAATTTCCTGATCCCGACTACTGTTGTGACCCATCGTTCG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAAGGCCAACATTGTTGCATTTCAATCACCAAAAATGAAAAAGCCGTAAGTTTATGTGGAAATGAAAAAATGGTATCTATAAACAATGAATTTTCAGTCACCACGGCTGCCACAGCTTGAAATGTTGCTCCTACTCTTTCTCCAATTGTGAAATCTGTTATTCTAGATCAGCTGGTCCGACAACTACACCATTGACGATGCTCAAAGTGCCAACACAACAAACTAACTATTATGCCAACGCCTACTGCTGTTGCTAAGATTCTGCAACTACCAAAGCTGGTTCAAAAAAACTGCCGACGCTTGGAATATTTCTCCAGCTCTTGCTCCAATTGAACAACATGGTATTTGTAGTACAACCGATGGTGCGACAACAATACCATGATAAAAAATGAATCCTGGATTGGGCTCCATGAATCCAATAATACGTGCTCCAGGAGCATGAGTAAGTTTTTCCAAAGCAGTTTTTCAAAAAAAAAAAAGAAGATTCTCAGCTTTCTGGAACCAACTAGAATTTCCTGATCCCGACTACTGTTGTGACCCATCGTTCGGCTGCTGTTGTCACTTCAGAAGGCCATGCCCACATGTCATGAAGGAGAAAATGTATCATTAGCTCGTACGTCAACAGACAGGGAAGGTGAGCCTAGAGAGCACCAGGAACGTCTTGTTCGTGAAGTTGAGAAGCGACAAGACGGAAAAACCCACATCGCTGAGCAGAAACAAATCCGTGAGGAGCAGGAACGACAAGTTAAAATCAATGCAACGCATCCGAAAAAAGAACAAAGGATTTTCAAAAGATCAAATCAACAAGTGAGTTTTCTTTGTTCCGAATTAAATTGACCCCGTTCCACCACGTTCAAGGTACTTCCTACTGATGCATCCGGGGTACACGTCTACCCACAAATAGTGTCGGACGAAACAAGTACCGTCAAACCAATTCAAGCAGTGCATGGATCAGGTGGAATCAGCTGATGCTTCCGGAGCTGCTTCAGGCATGACGG</canonical>
            <polymorphic>GAGAAGGCCAACATTGTTGCATTTCAATCACCAAAAATGAAAAAGCCGTAAGTTTATGTGGAAATGAAAAAATGGTATCTATAAACAATGAATTTTCAGTCACCACGGCTGCCACAGCTTGAAATGTTGCTCCTACTCTTTCTCCAATTGTGAAATCTGTTATTCTAGATCAGCTGGTCCGACAACTACACCATTGACGATGCTCAAAGTGCCAACACAACAAACTAACTATTATGCCAACGCCTACTGCTGTTGCTAAGATTCTGCAACTACCAAAGCTGGTTCAAAAAAACTGCCGACGCTTGGAATATTTCTCCAGCTCTTGCTCCAATTGAACAACATGGTATTTGTAGTACAACCGATGGTGCGACAACAATACCATGATAAAAAATGAATCCTGGATTGGGCTCCATGAATCCAATAATACGTGCTCCAGGAGCATGAGTAAGTTTTTCCAAAGCAGTTTTTCAAAAAAAAAAAAGAAGATTCTCAGCTTTCTSGAACCAACTAGAATTTCCTGATCCCGACTACTGTTGTGACCCATCGTTCGGCTGCTGTTGTCACTTCAGAAGGCCATGCCCACATGTCATGAAGGAGAAAATGTATCATTAGCTCGTACGTCAACAGACAGGGAAGGTGAGCCTAGAGAGCACCAGGAACGTCTTGTTCGTGAAGTTGAGAAGCGACAAGACGGAAAAACCCACATCGCTGAGCAGAAACAAATCCGTGAGGAGCAGGAACGACAAGTTAAAATCAATGCAACGCATCCGAAAAAAGAACAAAGGATTTTCAAAAGATCAAATCAACAAGTGAGTTTTCTTTGTTCCGAATTAAATTGACCCCGTTCCACCACGTTCAAGGTACTTCCTACTGATGCATCCGGGGTACACGTCTACCCACAAATAGTGTCGGACGAAACAAGTACCGTCAAACCAATTCAAGCAGTGCATGGATCAGGTGGAATCAGCTGATGCTTCCGGAGCTGCTTCAGGCATGACGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>498 408 94</canonical_bands>
                <polymorphic_bands>592 408</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGGAGCATGAGTAAGTTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CTTCTCAACTTCACGAACAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGGAGCATGAGTAAGTTTTTCCAAAGCAGTTTTTCAAAAAAAAAAAAGAAGATTCTCAGCTTTCTGGAACCAACTAGAATTTCCTGATCCCGACTACTGTTGTGACCCATCGTTCGGCTGCTGTTGTCACTTCAGAAGGCCATGCCCACATGTCATGAAGGAGAAAATGTATCATTAGCTCGTACGTCAACAGACAGGGAAGGTGAGCCTAGAGAGCACCAGGAACGTCTTGTTCGTGAAGTTGAGAAG</canonical_amplicon>
		<polymorphic_amplicon>CAGGAGCATGAGTAAGTTTTTCCAAAGCAGTTTTTCAAAAAAAAAAAAGAAGATTCTCAGCTTTCTSGAACCAACTAGAATTTCCTGATCCCGACTACTGTTGTGACCCATCGTTCGGCTGCTGTTGTCACTTCAGAAGGCCATGCCCACATGTCATGAAGGAGAAAATGTATCATTAGCTCGTACGTCAACAGACAGGGAAGGTGAGCCTAGAGAGCACCAGGAACGTCTTGTTCGTGAAGTTGAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34793</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>497053</contig_pos>
        <strand></strand>
        <context>tcatttccat[G/A]ccaagaaatc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTCGGTTTTAATGAAAAACAGATTCTAGAGATGCTAGCGATCATTTCCAT</left_flank>
        <right_flank>CCAAGAAATCTAAGTTTTGTTCAGAAAAAAATCACAGAAGTAAGTTTCGT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTGCAAAAACCACTATACAAAAATGCAGAAAAGTTCTGAAACATCGGGTTCTGAAACGTCGCGTTCTGAACTGTCGGGTTCTGAAACGTCGTGGTTCCGAAACGACGGGTTCTGAAACGTCCCGGAGCCCACACTGTCCTGTTTCAGTTGATTTACCGTCATTCCTAGGCAAGATATCAAAAAATATGTTAGCTGACAAAACACTTCTGACATTATAACAAACAATTTCAAAAGGTCACTCTATATTGTTTTGAGCTCAAATATCTCATTTTTTATAAGAAATATCAAACATTTGTCAACTAATGGAATGTTGGTGATATTGTCGAATTGAAAAAAAAACTGGGACCTGAGGATTTGGAAACCTCCTCTTTTTTTATCTGCGAAAAAGCGCGACAAAATTGTAATATTTCAGACTTTTGCCTCGTTCGAGCTACTTTCGCAACTAAGTTCGGTTTTAATGAAAAACAGATTCTAGAGATGCTAGCGATCATTTCCATGCCAAGAAATCTAAGTTTTGTTCAGAAAAAAATCACAGAAGTAAGTTTCGTTTACTACTGCAGTGATTTTTGGGCGAGGTTCCATAAATCGAAACGGAAGACAATAATATGAAACATATTTCATCTGTTGATAGATTTTCGTATCTTATATAAAAATCGAGATAATTGAACTCAAAGTTATAAAGTGGCTTTCTATTAAAGTATTCACGGTATATGAGATTTCTGATGGATGCAAAAGCAAGAAACCATAAACCCACAGTCTTATGTCCCTTCATAGTTTCTAGTTATAACCTGATGTCCCATAATTTTGTTAAGCTGTTCCAATGATCTCTTCTTCTTTTTTCTTTCATCATTTCGTACACCATTAGGGACCCCTTCTGAGAAGGTCAACGTTGGGTCAAAATGGGTGCAGACATAACAAAAAACTAATTTCCCTTTTTTCAGGCTGCTCAACTCTATGCGAAGTTTGTCCAAAAGCACCCATCGACAAATGTTAAGGTT</canonical>
            <polymorphic>TGGTGCAAAAACCACTATACAAAAATGCAGAAAAGTTCTGAAACATCGGGTTCTGAAACGTCGCGTTCTGAACTGTCGGGTTCTGAAACGTCGTGGTTCCGAAACGACGGGTTCTGAAACGTCCCGGAGCCCACACTGTCCTGTTTCAGTTGATTTACCGTCATTCCTAGGCAAGATATCAAAAAATATGTTAGCTGACAAAACACTTCTGACATTATAACAAACAATTTCAAAAGGTCACTCTATATTGTTTTGAGCTCAAATATCTCATTTTTTATAAGAAATATCAAACATTTGTCAACTAATGGAATGTTGGTGATATTGTCGAATTGAAAAAAAAACTGGGACCTGAGGATTTGGAAACCTCCTCTTTTTTTATCTGCGAAAAAGCGCGACAAAATTGTAATATTTCAGACTTTTGCCTCGTTCGAGCTACTTTCGCAACTAAGTTCGGTTTTAATGAAAAACAGATTCTAGAGATGCTAGCGATCATTTCCATRCCAAGAAATCTAAGTTTTGTTCAGAAAAAAATCACAGAAGTAAGTTTCGTTTACTACTGCAGTGATTTTTGGGCGAGGTTCCATAAATCGAAACGGAAGACAATAATATGAAACATATTTCATCTGTTGATAGATTTTCGTATCTTATATAAAAATCGAGATAATTGAACTCAAAGTTATAAAGTGGCTTTCTATTAAAGTATTCACGGTATATGAGATTTCTGATGGATGCAAAAGCAAGAAACCATAAACCCACAGTCTTATGTCCCTTCATAGTTTCTAGTTATAACCTGATGTCCCATAATTTTGTTAAGCTGTTCCAATGATCTCTTCTTCTTTTTTCTTTCATCATTTCGTACACCATTAGGGACCCCTTCTGAGAAGGTCAACGTTGGGTCAAAATGGGTGCAGACATAACAAAAAACTAATTTCCCTTTTTTCAGGCTGCTCAACTCTATGCGAAGTTTGTCCAAAAGCACCCATCGACAAATGTTAAGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCCCAGTGTGAACCTATTATT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGCATCCATCAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>836</pcr_amplicon_size>
		<canonical_amplicon>TGCCAAGAAATCTAAGTTTTGTTCAGAAAAAAATCACAGAAGTAAGTTTCGTTTACTACTGCAGTGATTTTTGGGCGAGGTTCCATAAATCGAAACGGAAGACAATAATATGAAACATATTTCATCTGTTGATAGATTTTCGTATCTTATATAAAAATCGAGATAATTGAACTCAAAGTTATAAAGTGGCTTTCTATTAAAGTATTCACGGTATATGAGATTTCTGATGGATGCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>TRCCAAGAAATCTAAGTTTTGTTCAGAAAAAAATCACAGAAGTAAGTTTCGTTTACTACTGCAGTGATTTTTGGGCGAGGTTCCATAAATCGAAACGGAAGACAATAATATGAAACATATTTCATCTGTTGATAGATTTTCGTATCTTATATAAAAATCGAGATAATTGAACTCAAAGTTATAAAGTGGCTTTCTATTAAAGTATTCACGGTATATGAGATTTCTGATGGATGCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34794</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>526164</contig_pos>
        <strand>+</strand>
        <context>AGAAGCGGTT[C/G]GAATTTATCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GATGACAGATCTGCTCTCATCCGGTTCAAAAGATGCTACAAGAAGCGGTT</left_flank>
        <right_flank>GAATTTATCGGATATTCTGAAAAAATAATTTTAATAATTTCTTGTTCATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGGGGGAGAGCATTCGAGTAACGTTTACAACTGAGGTGTTCCAACGTTTGAAAAGATTCTCCTGATTTCCATCTATTCACAAACTCTGTCAAATCTGAAGTTTCGTATTCGCGGCATCTTAAAATTGCTTGTTTCCCTTGAAAATGACGTAAAACAAAAGGAATAGTGCTATTGGGTTGAACTACTTCAACACATTCTGCCTGATAGGCTTTAGAATTCGGACTGAATGGTTCTGTGTATCCCAACGCGTAAAACATAATGTATTTCAAGTTTGGAGATTCTGAGAAAAAGTGTTCAAGGTTGGCGTAATCCGGGTCAATATCCATAACTTCAACACAAGCGAATATGTTTTGGAGCTGCGGAATAATATTCTCACAGTCGTCTGTTCTCCACAAATACTCCACAGAATTGCCGAATAGATGAAAATTATGATTGTGAATCGATTCGATGACAGATCTGCTCTCATCCGGTTCAAAAGATGCTACAAGAAGCGGTTCGAATTTATCGGATATTCTGAAAAAATAATTTTAATAATTTCTTGTTCATTGCAACTCACCTAAAATAAATAATTTTTCCAGATACGTTCAACGGAAAATAATCATTTTTAGTCGTCTGGCGTTCCACAATTTTTATCAAAACTTCTCTCCGACCCTGCTTAGGTGAAATATCAACAAACGGTTGTTTATTTGTATCATTACATGTATATCTGAGAGATCTGATATTTTTGAATCTATTGCTTTGAGTTAATTTGATCAACTTCTTCATTTTCGTCGAGACAAACGAAAGAAGAAATAGATTCTGATAATCGATGTTTTGGAGAATCTCTCTCTGGACCAAATAAGGATATTCGAAAAGTTTCATTTTGCAGTTCTGAAAATATAAAGCAGATTGCAGAGAAGAAAACAATTATTGGAAAGCGAGTGAAAGACATAAAGAGAGAGAGAGAGGACAACTTATCAAGAAAAAAGGTGTCTTCTGACGTGGCGAATAACCCAAA</canonical>
            <polymorphic>TTCTGGGGGAGAGCATTCGAGTAACGTTTACAACTGAGGTGTTCCAACGTTTGAAAAGATTCTCCTGATTTCCATCTATTCACAAACTCTGTCAAATCTGAAGTTTCGTATTCGCGGCATCTTAAAATTGCTTGTTTCCCTTGAAAATGACGTAAAACAAAAGGAATAGTGCTATTGGGTTGAACTACTTCAACACATTCTGCCTGATAGGCTTTAGAATTCGGACTGAATGGTTCTGTGTATCCCAACGCGTAAAACATAATGTATTTCAAGTTTGGAGATTCTGAGAAAAAGTGTTCAAGGTTGGCGTAATCCGGGTCAATATCCATAACTTCAACACAAGCGAATATGTTTTGGAGCTGCGGAATAATATTCTCACAGTCGTCTGTTCTCCACAAATACTCCACAGAATTGCCGAATAGATGAAAATTATGATTGTGAATCGATTCGATGACAGATCTGCTCTCATCCGGTTCAAAAGATGCTACAAGAAGCGGTTSGAATTTATCGGATATTCTGAAAAAATAATTTTAATAATTTCTTGTTCATTGCAACTCACCTAAAATAAATAATTTTTCCAGATACGTTCAACGGAAAATAATCATTTTTAGTCGTCTGGCGTTCCACAATTTTTATCAAAACTTCTCTCCGACCCTGCTTAGGTGAAATATCAACAAACGGTTGTTTATTTGTATCATTACATGTATATCTGAGAGATCTGATATTTTTGAATCTATTGCTTTGAGTTAATTTGATCAACTTCTTCATTTTCGTCGAGACAAACGAAAGAAGAAATAGATTCTGATAATCGATGTTTTGGAGAATCTCTCTCTGGACCAAATAAGGATATTCGAAAAGTTTCATTTTGCAGTTCTGAAAATATAAAGCAGATTGCAGAGAAGAAAACAATTATTGGAAAGCGAGTGAAAGACATAAAGAGAGAGAGAGAGGACAACTTATCAAGAAAAAAGGTGTCTTCTGACGTGGCGAATAACCCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>362 258 143 129 57 51</canonical_bands>
                <polymorphic_bands>413 258 143 129 57</polymorphic_bands>
            </assay>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>499 352 149</canonical_bands>
                <polymorphic_bands>851 149</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>426 275 148 51 42 35 18 5</canonical_bands>
                <polymorphic_bands>426 326 148 42 35 18 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATATCCATAACTTCAACACAA</pcr_primer_p1>
		<pcr_primer_p2>TTTATTTTAGGTGAGTTGCAATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAATATCCATAACTTCAACACAAGCGAATATGTTTTGGAGCTGCGGAATAATATTCTCACAGTCGTCTGTTCTCCACAAATACTCCACAGAATTGCCGAATAGATGAAAATTATGATTGTGAATCGATTCGATGACAGATCTGCTCTCATCCGGTTCAAAAGATGCTACAAGAAGCGGTTCGAATTTATCGGATATTCTGAAAAAATAATTTTAATAATTTCTTGTTCATTGCAACTCACCTAAAATAAA</canonical_amplicon>
		<polymorphic_amplicon>CAATATCCATAACTTCAACACAAGCGAATATGTTTTGGAGCTGCGGAATAATATTCTCACAGTCGTCTGTTCTCCACAAATACTCCACAGAATTGCCGAATAGATGAAAATTATGATTGTGAATCGATTCGATGACAGATCTGCTCTCATCCGGTTCAAAAGATGCTACAAGAAGCGGTTSGAATTTATCGGATATTCTGAAAAAATAATTTTAATAATTTCTTGTTCATTGCAACTCACCTAAAATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34795</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>526269</contig_pos>
        <strand>+</strand>
        <context>AAAATAATCA[C/T]TTTTAGTCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCACCTAAAATAAATAATTTTTCCAGATACGTTCAACGGAAAATAATCA</left_flank>
        <right_flank>TTTTAGTCGTCTGGCGTTCCACAATTTTTATCAAAACTTCTCTCCGACCC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTATTCGCGGCATCTTAAAATTGCTTGTTTCCCTTGAAAATGACGTAAAACAAAAGGAATAGTGCTATTGGGTTGAACTACTTCAACACATTCTGCCTGATAGGCTTTAGAATTCGGACTGAATGGTTCTGTGTATCCCAACGCGTAAAACATAATGTATTTCAAGTTTGGAGATTCTGAGAAAAAGTGTTCAAGGTTGGCGTAATCCGGGTCAATATCCATAACTTCAACACAAGCGAATATGTTTTGGAGCTGCGGAATAATATTCTCACAGTCGTCTGTTCTCCACAAATACTCCACAGAATTGCCGAATAGATGAAAATTATGATTGTGAATCGATTCGATGACAGATCTGCTCTCATCCGGTTCAAAAGATGCTACAAGAAGCGGTTCGAATTTATCGGATATTCTGAAAAAATAATTTTAATAATTTCTTGTTCATTGCAACTCACCTAAAATAAATAATTTTTCCAGATACGTTCAACGGAAAATAATCATTTTTAGTCGTCTGGCGTTCCACAATTTTTATCAAAACTTCTCTCCGACCCTGCTTAGGTGAAATATCAACAAACGGTTGTTTATTTGTATCATTACATGTATATCTGAGAGATCTGATATTTTTGAATCTATTGCTTTGAGTTAATTTGATCAACTTCTTCATTTTCGTCGAGACAAACGAAAGAAGAAATAGATTCTGATAATCGATGTTTTGGAGAATCTCTCTCTGGACCAAATAAGGATATTCGAAAAGTTTCATTTTGCAGTTCTGAAAATATAAAGCAGATTGCAGAGAAGAAAACAATTATTGGAAAGCGAGTGAAAGACATAAAGAGAGAGAGAGAGGACAACTTATCAAGAAAAAAGGTGTCTTCTGACGTGGCGAATAACCCAAAAGACACAGAGGAGGCAAAGAGAATGGTGGGTCCGAATCGAAGAGGGTGTATTGACTTTGACTAGTCAATAAGCAGTCTCTAGTGTCCCACAAAACCAACCCCTGG</canonical>
            <polymorphic>TCGTATTCGCGGCATCTTAAAATTGCTTGTTTCCCTTGAAAATGACGTAAAACAAAAGGAATAGTGCTATTGGGTTGAACTACTTCAACACATTCTGCCTGATAGGCTTTAGAATTCGGACTGAATGGTTCTGTGTATCCCAACGCGTAAAACATAATGTATTTCAAGTTTGGAGATTCTGAGAAAAAGTGTTCAAGGTTGGCGTAATCCGGGTCAATATCCATAACTTCAACACAAGCGAATATGTTTTGGAGCTGCGGAATAATATTCTCACAGTCGTCTGTTCTCCACAAATACTCCACAGAATTGCCGAATAGATGAAAATTATGATTGTGAATCGATTCGATGACAGATCTGCTCTCATCCGGTTCAAAAGATGCTACAAGAAGCGGTTCGAATTTATCGGATATTCTGAAAAAATAATTTTAATAATTTCTTGTTCATTGCAACTCACCTAAAATAAATAATTTTTCCAGATACGTTCAACGGAAAATAATCAYTTTTAGTCGTCTGGCGTTCCACAATTTTTATCAAAACTTCTCTCCGACCCTGCTTAGGTGAAATATCAACAAACGGTTGTTTATTTGTATCATTACATGTATATCTGAGAGATCTGATATTTTTGAATCTATTGCTTTGAGTTAATTTGATCAACTTCTTCATTTTCGTCGAGACAAACGAAAGAAGAAATAGATTCTGATAATCGATGTTTTGGAGAATCTCTCTCTGGACCAAATAAGGATATTCGAAAAGTTTCATTTTGCAGTTCTGAAAATATAAAGCAGATTGCAGAGAAGAAAACAATTATTGGAAAGCGAGTGAAAGACATAAAGAGAGAGAGAGAGGACAACTTATCAAGAAAAAAGGTGTCTTCTGACGTGGCGAATAACCCAAAAGACACAGAGGAGGCAAAGAGAATGGTGGGTCCGAATCGAAGAGGGTGTATTGACTTTGACTAGTCAATAAGCAGTCTCTAGTGTCCCACAAAACCAACCCCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTGCAACTCACCTAAAATAAA</pcr_primer_p1>
		<pcr_primer_p2>CTATTTCTTCTTTCGTTTGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CATTGCAACTCACCTAAAATAAATAATTTTTCCAGATACGTTCAACGGAAAATAATCATTTTTAGTCGTCTGGCGTTCCACAATTTTTATCAAAACTTCTCTCCGACCCTGCTTAGGTGAAATATCAACAAACGGTTGTTTATTTGTATCATTACATGTATATCTGAGAGATCTGATATTTTTGAATCTATTGCTTTGAGTTAATTTGATCAACTTCTTCATTTTCGTCGAGACAAACGAAAGAAGAAATAG</canonical_amplicon>
		<polymorphic_amplicon>CATTGCAACTCACCTAAAATAAATAATTTTTCCAGATACGTTCAACGGAAAATAATCAYTTTTAGTCGTCTGGCGTTCCACAATTTTTATCAAAACTTCTCTCCGACCCTGCTTAGGTGAAATATCAACAAACGGTTGTTTATTTGTATCATTACATGTATATCTGAGAGATCTGATATTTTTGAATCTATTGCTTTGAGTTAATTTGATCAACTTCTTCATTTTCGTCGAGACAAACGAAAGAAGAAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34796</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>533240</contig_pos>
        <strand>+</strand>
        <context>TTACATGGAA[A/T]TTGAGTCAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAGGGATAATCATATACGAGTTCAACCGTTCCCAGAGAATTACATGGAA</left_flank>
        <right_flank>TTGAGTCAATTCTGGAAAAAACATGATTTCCAAAAATTCTGAAGATTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGACTATCCGTGTATTTCTGAAATAAGTTTACATTCAACGCGAGCGTTTATACTATTATCCATCCCTTCTGTAAACATAGTCTACATTAGGCACCTGCTTTTTTTTTGAGATGATCTGGCTTTAACATGTCACCACCACCTGAGTGTGCTCACCCACTCCATCCCATTAATGTTTTGTAGAACGGAGGTCTGCACAGTGCGGGTAGATTGGACATTGTGTGTCCCATCTGCATATATTGATTGAGATTTATTCACGAAGACGAGCGCACCACCCAATCTAAGATGTGTCTGCCGCGAGTCGTAAATTACGCAACAGACAGGGATTGTTTCAATGCTACGTAGTGTGGTACGCGTACAGAAAATGATGAGAGATGAGAGATAAGAGGAAAAAGAGAGCTAAGGAAAATGCGCTAACTTTTGATAGGGAAGGTTACATTTACACAGTTATCAGGGATAATCATATACGAGTTCAACCGTTCCCAGAGAATTACATGGAATTTGAGTCAATTCTGGAAAAAACATGATTTCCAAAAATTCTGAAGATTTAAGAAAACTTTTTTCGTTCTCAGCCAACAAACTGGCTCAAGAAGCCCGTAGCTTATAACACATTGCATACATTATAAAAGTCTCACGTGCTTTTGAATTACTTAAGTTAAAGTCCGAGACAGACAGGCATACCAACAGACTAAAAGATTTTTCGGTAAATCTCCTTACCTGCTATTTATACTAACTCATGAGATTCGAATGCCCGTGAAGAACAATGAATTTTTCAACAACAATAAGAAGATCGTACAAATTAGTGAAAATATTTTGATCGGTTTTAAATTATTTTCTCCTTCTCAAAAGTAACTCTTTCTGAAATCTGTTTTGTCATATTACCGAACCATATCCCATTTTCAGATAATCAATCAAGCGACAATGTTGCGTTTGGATGCACTTTGTACTAAGAAAATCACCAACTTCTACTTGAACGGTACGAAATTATTATTTTTAGAAAA</canonical>
            <polymorphic>TGTGACTATCCGTGTATTTCTGAAATAAGTTTACATTCAACGCGAGCGTTTATACTATTATCCATCCCTTCTGTAAACATAGTCTACATTAGGCACCTGCTTTTTTTTTGAGATGATCTGGCTTTAACATGTCACCACCACCTGAGTGTGCTCACCCACTCCATCCCATTAATGTTTTGTAGAACGGAGGTCTGCACAGTGCGGGTAGATTGGACATTGTGTGTCCCATCTGCATATATTGATTGAGATTTATTCACGAAGACGAGCGCACCACCCAATCTAAGATGTGTCTGCCGCGAGTCGTAAATTACGCAACAGACAGGGATTGTTTCAATGCTACGTAGTGTGGTACGCGTACAGAAAATGATGAGAGATGAGAGATAAGAGGAAAAAGAGAGCTAAGGAAAATGCGCTAACTTTTGATAGGGAAGGTTACATTTACACAGTTATCAGGGATAATCATATACGAGTTCAACCGTTCCCAGAGAATTACATGGAAWTTGAGTCAATTCTGGAAAAAACATGATTTCCAAAAATTCTGAAGATTTAAGAAAACTTTTTTCGTTCTCAGCCAACAAACTGGCTCAAGAAGCCCGTAGCTTATAACACATTGCATACATTATAAAAGTCTCACGTGCTTTTGAATTACTTAAGTTAAAGTCCGAGACAGACAGGCATACCAACAGACTAAAAGATTTTTCGGTAAATCTCCTTACCTGCTATTTATACTAACTCATGAGATTCGAATGCCCGTGAAGAACAATGAATTTTTCAACAACAATAAGAAGATCGTACAAATTAGTGAAAATATTTTGATCGGTTTTAAATTATTTTCTCCTTCTCAAAAGTAACTCTTTCTGAAATCTGTTTTGTCATATTACCGAACCATATCCCATTTTCAGATAATCAATCAAGCGACAATGTTGCGTTTGGATGCACTTTGTACTAAGAAAATCACCAACTTCTACTTGAACGGTACGAAATTATTATTTTTAGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>497 235 231 37</canonical_bands>
                <polymorphic_bands>534 235 231</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>305 182 156 122 109 31 29 27 19 10 10</canonical_bands>
                <polymorphic_bands>305 182 156 122 109 31 29 27 20 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACACAGTTATCAGGGATAATCATA</pcr_primer_p1>
		<pcr_primer_p2>TTGAAAAATTCATTGTTCTTCAC</pcr_primer_p2>
		<pcr_amplicon_size>335</pcr_amplicon_size>
		<canonical_amplicon>ACACAGTTATCAGGGATAATCATATACGAGTTCAACCGTTCCCAGAGAATTACATGGAATTTGAGTCAATTCTGGAAAAAACATGATTTCCAAAAATTCTGAAGATTTAAGAAAACTTTTTTCGTTCTCAGCCAACAAACTGGCTCAAGAAGCCCGTAGCTTATAACACATTGCATACATTATAAAAGTCTCACGTGCTTTTGAATTACTTAAGTTAAAGTCCGAGACAGACAGGCATACCAACAGACTAAAAGATTTTTCGGTAAATCTCCTTACCTGCTATTTATACTAACTCATGAGATTCGAATGCCCGTGAAGAACAATGAATTTTTCAA</canonical_amplicon>
		<polymorphic_amplicon>ACACAGTTATCAGGGATAATCATATACGAGTTCAACCGTTCCCAGAGAATTACATGGAAWTTGAGTCAATTCTGGAAAAAACATGATTTCCAAAAATTCTGAAGATTTAAGAAAACTTTTTTCGTTCTCAGCCAACAAACTGGCTCAAGAAGCCCGTAGCTTATAACACATTGCATACATTATAAAAGTCTCACGTGCTTTTGAATTACTTAAGTTAAAGTCCGAGACAGACAGGCATACCAACAGACTAAAAGATTTTTCGGTAAATCTCCTTACCTGCTATTTATACTAACTCATGAGATTCGAATGCCCGTGAAGAACAATGAATTTTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34797</snp_id>
        <super_contig>c009500191.Contig3</super_contig>
        <contig_pos>533306</contig_pos>
        <strand>+</strand>
        <context>CTTTTTTCGT[A/T]CTCAGCCAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAAACATGATTTCCAAAAATTCTGAAGATTTAAGAAAACTTTTTTCGT</left_flank>
        <right_flank>CTCAGCCAACAAACTGGCTCAAGAAGCCCGTAGCTTATAACACATTGCAT</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTCTGTAAACATAGTCTACATTAGGCACCTGCTTTTTTTTTGAGATGATCTGGCTTTAACATGTCACCACCACCTGAGTGTGCTCACCCACTCCATCCCATTAATGTTTTGTAGAACGGAGGTCTGCACAGTGCGGGTAGATTGGACATTGTGTGTCCCATCTGCATATATTGATTGAGATTTATTCACGAAGACGAGCGCACCACCCAATCTAAGATGTGTCTGCCGCGAGTCGTAAATTACGCAACAGACAGGGATTGTTTCAATGCTACGTAGTGTGGTACGCGTACAGAAAATGATGAGAGATGAGAGATAAGAGGAAAAAGAGAGCTAAGGAAAATGCGCTAACTTTTGATAGGGAAGGTTACATTTACACAGTTATCAGGGATAATCATATACGAGTTCAACCGTTCCCAGAGAATTACATGGAATTTGAGTCAATTCTGGAAAAAACATGATTTCCAAAAATTCTGAAGATTTAAGAAAACTTTTTTCGTTCTCAGCCAACAAACTGGCTCAAGAAGCCCGTAGCTTATAACACATTGCATACATTATAAAAGTCTCACGTGCTTTTGAATTACTTAAGTTAAAGTCCGAGACAGACAGGCATACCAACAGACTAAAAGATTTTTCGGTAAATCTCCTTACCTGCTATTTATACTAACTCATGAGATTCGAATGCCCGTGAAGAACAATGAATTTTTCAACAACAATAAGAAGATCGTACAAATTAGTGAAAATATTTTGATCGGTTTTAAATTATTTTCTCCTTCTCAAAAGTAACTCTTTCTGAAATCTGTTTTGTCATATTACCGAACCATATCCCATTTTCAGATAATCAATCAAGCGACAATGTTGCGTTTGGATGCACTTTGTACTAAGAAAATCACCAACTTCTACTTGAACGGTACGAAATTATTATTTTTAGAAAAGTGTTTACCAAGCTATAGAAATGAATCTTAAGAATTCCAATCAACCGTTTTTAGGAAATATGAAAC</canonical>
            <polymorphic>CCTTCTGTAAACATAGTCTACATTAGGCACCTGCTTTTTTTTTGAGATGATCTGGCTTTAACATGTCACCACCACCTGAGTGTGCTCACCCACTCCATCCCATTAATGTTTTGTAGAACGGAGGTCTGCACAGTGCGGGTAGATTGGACATTGTGTGTCCCATCTGCATATATTGATTGAGATTTATTCACGAAGACGAGCGCACCACCCAATCTAAGATGTGTCTGCCGCGAGTCGTAAATTACGCAACAGACAGGGATTGTTTCAATGCTACGTAGTGTGGTACGCGTACAGAAAATGATGAGAGATGAGAGATAAGAGGAAAAAGAGAGCTAAGGAAAATGCGCTAACTTTTGATAGGGAAGGTTACATTTACACAGTTATCAGGGATAATCATATACGAGTTCAACCGTTCCCAGAGAATTACATGGAATTTGAGTCAATTCTGGAAAAAACATGATTTCCAAAAATTCTGAAGATTTAAGAAAACTTTTTTCGTWCTCAGCCAACAAACTGGCTCAAGAAGCCCGTAGCTTATAACACATTGCATACATTATAAAAGTCTCACGTGCTTTTGAATTACTTAAGTTAAAGTCCGAGACAGACAGGCATACCAACAGACTAAAAGATTTTTCGGTAAATCTCCTTACCTGCTATTTATACTAACTCATGAGATTCGAATGCCCGTGAAGAACAATGAATTTTTCAACAACAATAAGAAGATCGTACAAATTAGTGAAAATATTTTGATCGGTTTTAAATTATTTTCTCCTTCTCAAAAGTAACTCTTTCTGAAATCTGTTTTGTCATATTACCGAACCATATCCCATTTTCAGATAATCAATCAAGCGACAATGTTGCGTTTGGATGCACTTTGTACTAAGAAAATCACCAACTTCTACTTGAACGGTACGAAATTATTATTTTTAGAAAAGTGTTTACCAAGCTATAGAAATGAATCTTAAGAATTCCAATCAACCGTTTTTAGGAAATATGAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCGTTCCCAGAGAATTAC</pcr_primer_p1>
		<pcr_primer_p2>TTGAAAAATTCATTGTTCTTCAC</pcr_primer_p2>
		<pcr_amplicon_size>302</pcr_amplicon_size>
		<canonical_amplicon>AACCGTTCCCAGAGAATTACATGGAATTTGAGTCAATTCTGGAAAAAACATGATTTCCAAAAATTCTGAAGATTTAAGAAAACTTTTTTCGTTCTCAGCCAACAAACTGGCTCAAGAAGCCCGTAGCTTATAACACATTGCATACATTATAAAAGTCTCACGTGCTTTTGAATTACTTAAGTTAAAGTCCGAGACAGACAGGCATACCAACAGACTAAAAGATTTTTCGGTAAATCTCCTTACCTGCTATTTATACTAACTCATGAGATTCGAATGCCCGTGAAGAACAATGAATTTTTCAA</canonical_amplicon>
		<polymorphic_amplicon>AACCGTTCCCAGAGAATTACATGGAATTTGAGTCAATTCTGGAAAAAACATGATTTCCAAAAATTCTGAAGATTTAAGAAAACTTTTTTCGTWCTCAGCCAACAAACTGGCTCAAGAAGCCCGTAGCTTATAACACATTGCATACATTATAAAAGTCTCACGTGCTTTTGAATTACTTAAGTTAAAGTCCGAGACAGACAGGCATACCAACAGACTAAAAGATTTTTCGGTAAATCTCCTTACCTGCTATTTATACTAACTCATGAGATTCGAATGCCCGTGAAGAACAATGAATTTTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34798</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>16841</contig_pos>
        <strand>+</strand>
        <context>CTTTCTCTTT[A/C]TTTCGTTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGAGTTCCGTAAGAAGTGAGTTGTAAAGATTTTCAAACACTTTCTCTTT</left_flank>
        <right_flank>TTTCGTTTCTAAGGCGCGTTTCAGACTTTCGAACGAGTGAAGAAAAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACACCTACCGTAGCTCAATCACATCCAGACCATCTTTCAACAGAACTGTCACATCCAGCACTCAGAACTATGGAACCCCAGGATCCGGAAACCGTGTTCTCAAAATCGTTACTGAGATGTCATCGTCATCAGTAGCCAGTGGCCTCTCTCCATACGGTCAGAATGCCGCTTCAACAATTCGTGACAACCGTGAACGTGAGAAAAAAGAGATTATGGAGTTGAACGACCGTCTTGCTGGATACATCGAGAAGGTCAGATTTTTGGAGGCACAGAACAGAAAGTTGGGAGCTGATTTGCAAATGCTCCAAGGTAGATTCGGAAAGAGCACCGGATCTGTCAAAGTGATGTATGAGCTGGAGATCACAACTGCACAGACAGTTGTGAAACAGACTGGAAAGGACAAGGAAGAGGCTGAAAGAGAGATCCGCAAGTTACAAGATCAGTTGGATGAGTTCCGTAAGAAGTGAGTTGTAAAGATTTTCAAACACTTTCTCTTTATTTCGTTTCTAAGGCGCGTTTCAGACTTTCGAACGAGTGAAGAAAAATTTTGAAATTCGAAATTCGATTCTTACGTTTTTAGAGGTATATTTGAATAGTAATATTGAATTGTCAATGCAGAGAATTTTTTTCGTTTCAAAAAAAGATTCAGAATTTTCAGTAGCTTTATGACTATTGTCGGTCTCATTGTCTTATGACTTAAATTATGGTTTTCAGGTGGGAGGAAGCCAACAGCGGACGTGCCGAGGATCGCCTAAAGATTGATGAGCTCCTCGTAACACTTTCCGGACTGGAAGCCGAAATTAACCTTCTGAAGAGACGTATGCCCTTCTGGAGGAAGAAATTGCACGTCTCAGAAAAGAAAATGCTAGACTCCAAGCTGAACTTCAACGTGTCAGAGTTGTAAGTTCATTTTAGAATGTTTGCTTTTTACATTTGTTTTTACATTACGTTGACCCATTCACTCATCTGAATGTTTCAGCAACTCGACCAAGAGACCC</canonical>
            <polymorphic>CGACACCTACCGTAGCTCAATCACATCCAGACCATCTTTCAACAGAACTGTCACATCCAGCACTCAGAACTATGGAACCCCAGGATCCGGAAACCGTGTTCTCAAAATCGTTACTGAGATGTCATCGTCATCAGTAGCCAGTGGCCTCTCTCCATACGGTCAGAATGCCGCTTCAACAATTCGTGACAACCGTGAACGTGAGAAAAAAGAGATTATGGAGTTGAACGACCGTCTTGCTGGATACATCGAGAAGGTCAGATTTTTGGAGGCACAGAACAGAAAGTTGGGAGCTGATTTGCAAATGCTCCAAGGTAGATTCGGAAAGAGCACCGGATCTGTCAAAGTGATGTATGAGCTGGAGATCACAACTGCACAGACAGTTGTGAAACAGACTGGAAAGGACAAGGAAGAGGCTGAAAGAGAGATCCGCAAGTTACAAGATCAGTTGGATGAGTTCCGTAAGAAGTGAGTTGTAAAGATTTTCAAACACTTTCTCTTTMTTTCGTTTCTAAGGCGCGTTTCAGACTTTCGAACGAGTGAAGAAAAATTTTGAAATTCGAAATTCGATTCTTACGTTTTTAGAGGTATATTTGAATAGTAATATTGAATTGTCAATGCAGAGAATTTTTTTCGTTTCAAAAAAAGATTCAGAATTTTCAGTAGCTTTATGACTATTGTCGGTCTCATTGTCTTATGACTTAAATTATGGTTTTCAGGTGGGAGGAAGCCAACAGCGGACGTGCCGAGGATCGCCTAAAGATTGATGAGCTCCTCGTAACACTTTCCGGACTGGAAGCCGAAATTAACCTTCTGAAGAGACGTATGCCCTTCTGGAGGAAGAAATTGCACGTCTCAGAAAAGAAAATGCTAGACTCCAAGCTGAACTTCAACGTGTCAGAGTTGTAAGTTCATTTTAGAATGTTTGCTTTTTACATTTGTTTTTACATTACGTTGACCCATTCACTCATCTGAATGTTTCAGCAACTCGACCAAGAGACCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACAAGATCAGTTGGATGAGTT</pcr_primer_p1>
		<pcr_primer_p2>GACCGACAATAGTCATAAAGCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTACAAGATCAGTTGGATGAGTTCCGTAAGAAGTGAGTTGTAAAGATTTTCAAACACTTTCTCTTTATTTCGTTTCTAAGGCGCGTTTCAGACTTTCGAACGAGTGAAGAAAAATTTTGAAATTCGAAATTCGATTCTTACGTTTTTAGAGGTATATTTGAATAGTAATATTGAATTGTCAATGCAGAGAATTTTTTTCGTTTCAAAAAAAGATTCAGAATTTTCAGTAGCTTTATGACTATTGTCGGTC</canonical_amplicon>
		<polymorphic_amplicon>TTACAAGATCAGTTGGATGAGTTCCGTAAGAAGTGAGTTGTAAAGATTTTCAAACACTTTCTCTTTMTTTCGTTTCTAAGGCGCGTTTCAGACTTTCGAACGAGTGAAGAAAAATTTTGAAATTCGAAATTCGATTCTTACGTTTTTAGAGGTATATTTGAATAGTAATATTGAATTGTCAATGCAGAGAATTTTTTTCGTTTCAAAAAAAGATTCAGAATTTTCAGTAGCTTTATGACTATTGTCGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34799</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>35247</contig_pos>
        <strand>+</strand>
        <context>GTACCTCGAT[C/T]CAGCCAGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGCTCGTCAACGTCTTCTGGTTTTTCTTTGCCCAAGCGTGTACCTCGAT</left_flank>
        <right_flank>CAGCCAGTTTTTGCCGCGGCTCCTCTTCAAGAAACGCTCAGGGGCGCGCC</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCATTGAAACATCCCTTTCGGAAATTGGCCCCGGTTTTTCCCATCCTTCTTCCGATGCGAGTCCATGAAACGTAATAGCCACGTCCCCAAATGTTTTTTCGACACAAAGGCGCAAAGGCATGAATTGTCAAGAAGATGAGGAGCATCGTTCTAAGAAGCTTTTTGCGACTAAAAAGCAGGAGAAGTTGTTTTTTGTTTACGGCTTCCCACCCATATATTTTCTGTCTGGGCGGCTTGTTTTCTCCTTTCCTGGTCATAGCTTTTACGAGAGGAAAACCGAAAATAGGGTTCTGAATTATTTTTCGTATTTTTTGCGAAGTAGTGAACCTCTTTTAGGTGATTCTTTCTACGTTTACTATTTTTCTTCATTGTTTTAAAATAATCTCTTTTAAATTCTCATGAAGCAATAAAAAATTGGCTCTACTCTTCCTCGCCACTCATTCTTTTTTCTGCTCGTCAACGTCTTCTGGTTTTTCTTTGCCCAAGCGTGTACCTCGATTCAGCCAGTTTTTGCCGCGGCTCCTCTTCAAGAAACGCTCAGGGGCGCGCCCGGTGTCAGCTCCTTTTCGATATGGTCTCTTCACTTCCAGTTTTCTCTGATGCTTCTTCGTGCGGCTCGTCTATCGATTATAAGATGAGCAGCTTCCTCACGGCGCCACGGCGCGTAGGAAGAATTGTGAGCTCGGGTTTTTTTTGCGCTCTTCCTCCTTCCCAATTCTGTCCTCTTACCGATGCATAAGAAGAAAAGCACAAATGCTCTTTCTCTGTGTCGCATCGGAGCAGGAGAAGATTTGAAGAGAGAAAAAGCAAAAAAGGAAGAATACAAAGATTGAAAGCAATGAGTAGAACGGAGACATATATAGGAAGGGGGTGCACATTTTGCTCTCTCTCTCTTTTTTGCTCTCTCTTACAAGCAAACATTTGAACTCATTCTCATTTGTTATCCAAAATACTTACTCGAAAATTCTTGAAAAGAGCACTGAGGAGTTTGTACCAAAAA</canonical>
            <polymorphic>CCATTGAAACATCCCTTTCGGAAATTGGCCCCGGTTTTTCCCATCCTTCTTCCGATGCGAGTCCATGAAACGTAATAGCCACGTCCCCAAATGTTTTTTCGACACAAAGGCGCAAAGGCATGAATTGTCAAGAAGATGAGGAGCATCGTTCTAAGAAGCTTTTTGCGACTAAAAAGCAGGAGAAGTTGTTTTTTGTTTACGGCTTCCCACCCATATATTTTCTGTCTGGGCGGCTTGTTTTCTCCTTTCCTGGTCATAGCTTTTACGAGAGGAAAACCGAAAATAGGGTTCTGAATTATTTTTCGTATTTTTTGCGAAGTAGTGAACCTCTTTTAGGTGATTCTTTCTACGTTTACTATTTTTCTTCATTGTTTTAAAATAATCTCTTTTAAATTCTCATGAAGCAATAAAAAATTGGCTCTACTCTTCCTCGCCACTCATTCTTTTTTCTGCTCGTCAACGTCTTCTGGTTTTTCTTTGCCCAAGCGTGTACCTCGATYCAGCCAGTTTTTGCCGCGGCTCCTCTTCAAGAAACGCTCAGGGGCGCGCCCGGTGTCAGCTCCTTTTCGATATGGTCTCTTCACTTCCAGTTTTCTCTGATGCTTCTTCGTGCGGCTCGTCTATCGATTATAAGATGAGCAGCTTCCTCACGGCGCCACGGCGCGTAGGAAGAATTGTGAGCTCGGGTTTTTTTTGCGCTCTTCCTCCTTCCCAATTCTGTCCTCTTACCGATGCATAAGAAGAAAAGCACAAATGCTCTTTCTCTGTGTCGCATCGGAGCAGGAGAAGATTTGAAGAGAGAAAAAGCAAAAAAGGAAGAATACAAAGATTGAAAGCAATGAGTAGAACGGAGACATATATAGGAAGGGGGTGCACATTTTGCTCTCTCTCTCTTTTTTGCTCTCTCTTACAAGCAAACATTTGAACTCATTCTCATTTGTTATCCAAAATACTTACTCGAAAATTCTTGAAAAGAGCACTGAGGAGTTTGTACCAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>503 280 158 59</canonical_bands>
                <polymorphic_bands>661 280 59</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 339 158</canonical_bands>
                <polymorphic_bands>661 339</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTCTCATGAAGCAATAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GCTGCTCATCTTATAATCGATAG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAATTCTCATGAAGCAATAAAAAATTGGCTCTACTCTTCCTCGCCACTCATTCTTTTTTCTGCTCGTCAACGTCTTCTGGTTTTTCTTTGCCCAAGCGTGTACCTCGATTCAGCCAGTTTTTGCCGCGGCTCCTCTTCAAGAAACGCTCAGGGGCGCGCCCGGTGTCAGCTCCTTTTCGATATGGTCTCTTCACTTCCAGTTTTCTCTGATGCTTCTTCGTGCGGCTCGTCTATCGATTATAAGATGAGCAGC</canonical_amplicon>
		<polymorphic_amplicon>AAATTCTCATGAAGCAATAAAAAATTGGCTCTACTCTTCCTCGCCACTCATTCTTTTTTCTGCTCGTCAACGTCTTCTGGTTTTTCTTTGCCCAAGCGTGTACCTCGATYCAGCCAGTTTTTGCCGCGGCTCCTCTTCAAGAAACGCTCAGGGGCGCGCCCGGTGTCAGCTCCTTTTCGATATGGTCTCTTCACTTCCAGTTTTCTCTGATGCTTCTTCGTGCGGCTCGTCTATCGATTATAAGATGAGCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34800</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>35334</contig_pos>
        <strand>+</strand>
        <context>CTCTTCACTT[C/T]CAGTTTTCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCAGGGGCGCGCCCGGTGTCAGCTCCTTTTCGATATGGTCTCTTCACTT</left_flank>
        <right_flank>CAGTTTTCTCTGATGCTTCTTCGTGCGGCTCGTCTATCGATTATAAGATG</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATGTTTTTTCGACACAAAGGCGCAAAGGCATGAATTGTCAAGAAGATGAGGAGCATCGTTCTAAGAAGCTTTTTGCGACTAAAAAGCAGGAGAAGTTGTTTTTTGTTTACGGCTTCCCACCCATATATTTTCTGTCTGGGCGGCTTGTTTTCTCCTTTCCTGGTCATAGCTTTTACGAGAGGAAAACCGAAAATAGGGTTCTGAATTATTTTTCGTATTTTTTGCGAAGTAGTGAACCTCTTTTAGGTGATTCTTTCTACGTTTACTATTTTTCTTCATTGTTTTAAAATAATCTCTTTTAAATTCTCATGAAGCAATAAAAAATTGGCTCTACTCTTCCTCGCCACTCATTCTTTTTTCTGCTCGTCAACGTCTTCTGGTTTTTCTTTGCCCAAGCGTGTACCTCGATTCAGCCAGTTTTTGCCGCGGCTCCTCTTCAAGAAACGCTCAGGGGCGCGCCCGGTGTCAGCTCCTTTTCGATATGGTCTCTTCACTTCCAGTTTTCTCTGATGCTTCTTCGTGCGGCTCGTCTATCGATTATAAGATGAGCAGCTTCCTCACGGCGCCACGGCGCGTAGGAAGAATTGTGAGCTCGGGTTTTTTTTGCGCTCTTCCTCCTTCCCAATTCTGTCCTCTTACCGATGCATAAGAAGAAAAGCACAAATGCTCTTTCTCTGTGTCGCATCGGAGCAGGAGAAGATTTGAAGAGAGAAAAAGCAAAAAAGGAAGAATACAAAGATTGAAAGCAATGAGTAGAACGGAGACATATATAGGAAGGGGGTGCACATTTTGCTCTCTCTCTCTTTTTTGCTCTCTCTTACAAGCAAACATTTGAACTCATTCTCATTTGTTATCCAAAATACTTACTCGAAAATTCTTGAAAAGAGCACTGAGGAGTTTGTACCAAAAAAAAAATAACTGTCAATCAGTTCCAAAAGTGGTGCAAGCTGAAAATTGTCAGGTCACAATCATACAAATCTTGTATGCTTTACTCAGA</canonical>
            <polymorphic>CAAATGTTTTTTCGACACAAAGGCGCAAAGGCATGAATTGTCAAGAAGATGAGGAGCATCGTTCTAAGAAGCTTTTTGCGACTAAAAAGCAGGAGAAGTTGTTTTTTGTTTACGGCTTCCCACCCATATATTTTCTGTCTGGGCGGCTTGTTTTCTCCTTTCCTGGTCATAGCTTTTACGAGAGGAAAACCGAAAATAGGGTTCTGAATTATTTTTCGTATTTTTTGCGAAGTAGTGAACCTCTTTTAGGTGATTCTTTCTACGTTTACTATTTTTCTTCATTGTTTTAAAATAATCTCTTTTAAATTCTCATGAAGCAATAAAAAATTGGCTCTACTCTTCCTCGCCACTCATTCTTTTTTCTGCTCGTCAACGTCTTCTGGTTTTTCTTTGCCCAAGCGTGTACCTCGATTCAGCCAGTTTTTGCCGCGGCTCCTCTTCAAGAAACGCTCAGGGGCGCGCCCGGTGTCAGCTCCTTTTCGATATGGTCTCTTCACTTYCAGTTTTCTCTGATGCTTCTTCGTGCGGCTCGTCTATCGATTATAAGATGAGCAGCTTCCTCACGGCGCCACGGCGCGTAGGAAGAATTGTGAGCTCGGGTTTTTTTTGCGCTCTTCCTCCTTCCCAATTCTGTCCTCTTACCGATGCATAAGAAGAAAAGCACAAATGCTCTTTCTCTGTGTCGCATCGGAGCAGGAGAAGATTTGAAGAGAGAAAAAGCAAAAAAGGAAGAATACAAAGATTGAAAGCAATGAGTAGAACGGAGACATATATAGGAAGGGGGTGCACATTTTGCTCTCTCTCTCTTTTTTGCTCTCTCTTACAAGCAAACATTTGAACTCATTCTCATTTGTTATCCAAAATACTTACTCGAAAATTCTTGAAAAGAGCACTGAGGAGTTTGTACCAAAAAAAAAATAACTGTCAATCAGTTCCAAAAGTGGTGCAAGCTGAAAATTGTCAGGTCACAATCATACAAATCTTGTATGCTTTACTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCTCATGAAGCAATAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GCTGCTCATCTTATAATCGATAG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAATTCTCATGAAGCAATAAAAAATTGGCTCTACTCTTCCTCGCCACTCATTCTTTTTTCTGCTCGTCAACGTCTTCTGGTTTTTCTTTGCCCAAGCGTGTACCTCGATTCAGCCAGTTTTTGCCGCGGCTCCTCTTCAAGAAACGCTCAGGGGCGCGCCCGGTGTCAGCTCCTTTTCGATATGGTCTCTTCACTTCCAGTTTTCTCTGATGCTTCTTCGTGCGGCTCGTCTATCGATTATAAGATGAGCAGC</canonical_amplicon>
		<polymorphic_amplicon>AAATTCTCATGAAGCAATAAAAAATTGGCTCTACTCTTCCTCGCCACTCATTCTTTTTTCTGCTCGTCAACGTCTTCTGGTTTTTCTTTGCCCAAGCGTGTACCTCGATTCAGCCAGTTTTTGCCGCGGCTCCTCTTCAAGAAACGCTCAGGGGCGCGCCCGGTGTCAGCTCCTTTTCGATATGGTCTCTTCACTTYCAGTTTTCTCTGATGCTTCTTCGTGCGGCTCGTCTATCGATTATAAGATGAGCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34801</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>37162</contig_pos>
        <strand></strand>
        <context>TTTCTGATGC[G/A]TCTCCGATWT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGATCCATGACTACCTTTTTTTTCCGTTTTTTGTGGCGTTTTTCTGATGC</left_flank>
        <right_flank>TCTCCGATATTTATTCTTCATTTCAAACAAAAATCGTTTTCCAGGCTTGG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTAATTTTATGGAGATTCCCTCTGTGTTCTATTTGAATTTTACTTATTCGGTTTTCCACATCTAGCGTTAGTTACCACAAACCAAGTTTTGATATTTTTCAGTCATAGAAAAAATTGATTTCGTTTTTTTTGCTTCCGTTTTTTTTTCGGCTCTTCCGTTTTTCGACATGTGTACCAAAAGCTAATAAGACGGGCGGGCGCCTCCTCTGCAGAGCCCAATGAATCAGAGCCAATGAAATTTCGAATTTTCCTTTTTCTTTTCTCCAAATCACACATGTCCCTTCCTTTTTTTCAAGCCATTCTCGTTTTTTTTCTCAGAAAAAAATCACTTGATATCATAGCTTTTTTCGTATTATTTGTGGTCGAGAAAGAAAGCGACGACACAAATGGTTTAGCTGTCATCCCGATTTTTTATACGCTTTTCATATGGACATGAATATGCATATAGATCCATGACTACCTTTTTTTTCCGTTTTTTGTGGCGTTTTTCTGATGCGTCTCCGATATTTATTCTTCATTTCAAACAAAAATCGTTTTCCAGGCTTGGCTTCATTCTGTCATCATGAACCTTCAAATGGCAGGTATGTCGGGGGATTGAAACATTGAAAAACAGTATCAGTCCTCCTGATAAGCAGCCGTGACTGCCATAAGTAAAACCTGAAAAAATTCATTTTCTGGCACTGACAATGCATTTATGCATTCCTGAAATAAGTGGCCTGGTCTAGAGGCCGGCTCTCCTATCATATTAGGTTGGCGGGAAAGTCTTTGTCACTTTTTCAATAGTTTATTTCTCAAAGAAAAAATAACCGAATAATTAATTATATTGTCCATCATTATCAACAACATGTCTCCAACGTTCCCTCAATTTATGGATTCCATTGCGGTAGAATCCAGCCGGGCGTGAGGCAAAGTATTGTTTGAGTGCCGCTTCGACCGCTCCACGGGAATTGAAGCTTCTTCCTTCGAAGGCACGTGTCATATCGCCAAATAACCAATA</canonical>
            <polymorphic>TTTCTAATTTTATGGAGATTCCCTCTGTGTTCTATTTGAATTTTACTTATTCGGTTTTCCACATCTAGCGTTAGTTACCACAAACCAAGTTTTGATATTTTTCAGTCATAGAAAAAATTGATTTCGTTTTTTTTGCTTCCGTTTTTTTTTCGGCTCTTCCGTTTTTCGACATGTGTACCAAAAGCTAATAAGACGGGCGGGCGCCTCCTCTGCAGAGCCCAATGAATCAGAGCCAATGAAATTTCGAATTTTCCTTTTTCTTTTCTCCAAATCACACATGTCCCTTCCTTTTTTTCAAGCCATTCTCGTTTTTTTTCTCAGAAAAAAATCACTTGATATCATAGCTTTTTTCGTATTATTTGTGGTCGAGAAAGAAAGCGACGACACAAATGGTTTAGCTGTCATCCCGATTTTTTATACGCTTTTCATATGGACATGAATATGCATATAGATCCATGACTACCTTTTTTTTCCGTTTTTTGTGGCGTTTTTCTGATGCRTCTCCGATATTTATTCTTCATTTCAAACAAAAATCGTTTTCCAGGCTTGGCTTCATTCTGTCATCATGAACCTTCAAATGGCAGGTATGTCGGGGGATTGAAACATTGAAAAACAGTATCAGTCCTCCTGATAAGCAGCCGTGACTGCCATAAGTAAAACCTGAAAAAATTCATTTTCTGGCACTGACAATGCATTTATGCATTCCTGAAATAAGTGGCCTGGTCTAGAGGCCGGCTCTCCTATCATATTAGGTTGGCGGGAAAGTCTTTGTCACTTTTTCAATAGTTTATTTCTCAAAGAAAAAATAACCGAATAATTAATTATATTGTCCATCATTATCAACAACATGTCTCCAACGTTCCCTCAATTTATGGATTCCATTGCGGTAGAATCCAGCCGGGCGTGAGGCAAAGTATTGTTTGAGTGCCGCTTCGACCGCTCCACGGGAATTGAAGCTTCTTCCTTCGAAGGCACGTGTCATATCGCCAAATAACCAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACAAATGGTTTAGCTGTCAT</pcr_primer_p1>
		<pcr_primer_p2>TATCAGGAGGACTGATACTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACACAAATGGTTTAGCTGTCATCCCGATTTTTTATACGCTTTTCATATGGACATGAATATGCATATAGATCCATGACTACCTTTTTTTTCCGTTTTTTGTGGCGTTTTTCTGATGCGTCTCCGATATTTATTCTTCATTTCAAACAAAAATCGTTTTCCAGGCTTGGCTTCATTCTGTCATCATGAACCTTCAAATGGCAGGTATGTCGGGGGATTGAAACATTGAAAAACAGTATCAGTCCTCCTGATA</canonical_amplicon>
		<polymorphic_amplicon>ACACAAATGGTTTAGCTGTCATCCCGATTTTTTATACGCTTTTCATATGGACATGAATATGCATATAGATCCATGACTACCTTTTTTTTCCGTTTTTTGTGGCGTTTTTCTGATGCRTCTCCGATATTTATTCTTCATTTCAAACAAAAATCGTTTTCCAGGCTTGGCTTCATTCTGTCATCATGAACCTTCAAATGGCAGGTATGTCGGGGGATTGAAACATTGAAAAACAGTATCAGTCCTCCTGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34802</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>37171</contig_pos>
        <strand></strand>
        <context>CRTCTCCGAT[A/T]TTTATTCTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTACCTTTTTTTTCCGTTTTTTGTGGCGTTTTTCTGATGCGTCTCCGAT</left_flank>
        <right_flank>TTTATTCTTCATTTCAAACAAAAATCGTTTTCCAGGCTTGGCTTCATTCT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATGGAGATTCCCTCTGTGTTCTATTTGAATTTTACTTATTCGGTTTTCCACATCTAGCGTTAGTTACCACAAACCAAGTTTTGATATTTTTCAGTCATAGAAAAAATTGATTTCGTTTTTTTTGCTTCCGTTTTTTTTTCGGCTCTTCCGTTTTTCGACATGTGTACCAAAAGCTAATAAGACGGGCGGGCGCCTCCTCTGCAGAGCCCAATGAATCAGAGCCAATGAAATTTCGAATTTTCCTTTTTCTTTTCTCCAAATCACACATGTCCCTTCCTTTTTTTCAAGCCATTCTCGTTTTTTTTCTCAGAAAAAAATCACTTGATATCATAGCTTTTTTCGTATTATTTGTGGTCGAGAAAGAAAGCGACGACACAAATGGTTTAGCTGTCATCCCGATTTTTTATACGCTTTTCATATGGACATGAATATGCATATAGATCCATGACTACCTTTTTTTTCCGTTTTTTGTGGCGTTTTTCTGATGCGTCTCCGATATTTATTCTTCATTTCAAACAAAAATCGTTTTCCAGGCTTGGCTTCATTCTGTCATCATGAACCTTCAAATGGCAGGTATGTCGGGGGATTGAAACATTGAAAAACAGTATCAGTCCTCCTGATAAGCAGCCGTGACTGCCATAAGTAAAACCTGAAAAAATTCATTTTCTGGCACTGACAATGCATTTATGCATTCCTGAAATAAGTGGCCTGGTCTAGAGGCCGGCTCTCCTATCATATTAGGTTGGCGGGAAAGTCTTTGTCACTTTTTCAATAGTTTATTTCTCAAAGAAAAAATAACCGAATAATTAATTATATTGTCCATCATTATCAACAACATGTCTCCAACGTTCCCTCAATTTATGGATTCCATTGCGGTAGAATCCAGCCGGGCGTGAGGCAAAGTATTGTTTGAGTGCCGCTTCGACCGCTCCACGGGAATTGAAGCTTCTTCCTTCGAAGGCACGTGTCATATCGCCAAATAACCAATATCGGAAGGA</canonical>
            <polymorphic>TTATGGAGATTCCCTCTGTGTTCTATTTGAATTTTACTTATTCGGTTTTCCACATCTAGCGTTAGTTACCACAAACCAAGTTTTGATATTTTTCAGTCATAGAAAAAATTGATTTCGTTTTTTTTGCTTCCGTTTTTTTTTCGGCTCTTCCGTTTTTCGACATGTGTACCAAAAGCTAATAAGACGGGCGGGCGCCTCCTCTGCAGAGCCCAATGAATCAGAGCCAATGAAATTTCGAATTTTCCTTTTTCTTTTCTCCAAATCACACATGTCCCTTCCTTTTTTTCAAGCCATTCTCGTTTTTTTTCTCAGAAAAAAATCACTTGATATCATAGCTTTTTTCGTATTATTTGTGGTCGAGAAAGAAAGCGACGACACAAATGGTTTAGCTGTCATCCCGATTTTTTATACGCTTTTCATATGGACATGAATATGCATATAGATCCATGACTACCTTTTTTTTCCGTTTTTTGTGGCGTTTTTCTGATGCGTCTCCGATWTTTATTCTTCATTTCAAACAAAAATCGTTTTCCAGGCTTGGCTTCATTCTGTCATCATGAACCTTCAAATGGCAGGTATGTCGGGGGATTGAAACATTGAAAAACAGTATCAGTCCTCCTGATAAGCAGCCGTGACTGCCATAAGTAAAACCTGAAAAAATTCATTTTCTGGCACTGACAATGCATTTATGCATTCCTGAAATAAGTGGCCTGGTCTAGAGGCCGGCTCTCCTATCATATTAGGTTGGCGGGAAAGTCTTTGTCACTTTTTCAATAGTTTATTTCTCAAAGAAAAAATAACCGAATAATTAATTATATTGTCCATCATTATCAACAACATGTCTCCAACGTTCCCTCAATTTATGGATTCCATTGCGGTAGAATCCAGCCGGGCGTGAGGCAAAGTATTGTTTGAGTGCCGCTTCGACCGCTCCACGGGAATTGAAGCTTCTTCCTTCGAAGGCACGTGTCATATCGCCAAATAACCAATATCGGAAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACAAATGGTTTAGCTGTCAT</pcr_primer_p1>
		<pcr_primer_p2>TATCAGGAGGACTGATACTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACACAAATGGTTTAGCTGTCATCCCGATTTTTTATACGCTTTTCATATGGACATGAATATGCATATAGATCCATGACTACCTTTTTTTTCCGTTTTTTGTGGCGTTTTTCTGATGCGTCTCCGATATTTATTCTTCATTTCAAACAAAAATCGTTTTCCAGGCTTGGCTTCATTCTGTCATCATGAACCTTCAAATGGCAGGTATGTCGGGGGATTGAAACATTGAAAAACAGTATCAGTCCTCCTGATA</canonical_amplicon>
		<polymorphic_amplicon>ACACAAATGGTTTAGCTGTCATCCCGATTTTTTATACGCTTTTCATATGGACATGAATATGCATATAGATCCATGACTACCTTTTTTTTCCGTTTTTTGTGGCGTTTTTCTGATGCGTCTCCGATWTTTATTCTTCATTTCAAACAAAAATCGTTTTCCAGGCTTGGCTTCATTCTGTCATCATGAACCTTCAAATGGCAGGTATGTCGGGGGATTGAAACATTGAAAAACAGTATCAGTCCTCCTGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34803</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>38739</contig_pos>
        <strand>+</strand>
        <context>GTCTCGTTTG[A/G]GTGCTTTTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGTATAGAATCTGGAAAAAAGCATAAGGTTCGGCCTAGGTCTCGTTTG</left_flank>
        <right_flank>GTGCTTTTTAAGTATGCATCAAAAAACTTACAAAAATAGTATTGCAGTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGAAATGGATCCGATTGCAATGCGTGCTTCAGCTTGTCCAAATCCAACTCACGGGGTCTCCCAGAGCGATCCTTTTCATCGAGCGAGAAGTCATCTTTTTCGAAACGATGGAACCAATTGCGAATAGTATTGTAGTGAGGGGCATGTGTGTTGTACACATTCTTCAAGAAAGTTTCCGAATCCTTCATCGTGGTGTGAGATAGGAAGAGGTAAATCAAAACATGTCTGATGTGAATAGCAGTGGGAACAAACATATCGTTTCAATTACAGATGAGGAGCAGGGAAGGAAATGGGGACTTGTTTATATGGAAGGTTCTTATCACCTTGTTATTCACTAGAGTCGATATCATACACAGCCTCCATATACGAGAACAGTGATTAAACAAACAGAGTGACAAAGACTTTCCCGCCAACCTAATATTTACATATGTATTATACCTGGGTCAAAAAGTATAGAATCTGGAAAAAAGCATAAGGTTCGGCCTAGGTCTCGTTTGAGTGCTTTTTAAGTATGCATCAAAAAACTTACAAAAATAGTATTGCAGTGGATAGCGTTGAGCACGAGATGCTAGAGCTTTCACAACAACACGATGCCTTCAATCGGGATTTGAACGTAGACATGATCCAGGAAACTGACTATGCCTCACATCACGATTTGATGAGATTGATTGCTGCTCAAAATCCGGAGGCCGCTGAGGATATTTTGAGAAACCACAAAATCAAGCATCCATTGGCAATGGAGAAGCAGCGAGAGTTGTTCTCTCTTCGTCCCACAGTTTTCCAGTTTTTCGTCGAGATCGTTGTGAACAAGGACCACCCGTTCCATCGTTTGAAACAATACCAAACACTTCTGTCTCTCATGACTGACCTCTACCCATCAGTTATGGCTGACGCTGAGCATGTTCTCTTCTGGGAGCGATTGCTCGATGCTGCTGTTTTCAACTTTGCTAACTGTCAATGTGTCAATGAAGCTTTGAAAATTGAGGATCAACCACTTA</canonical>
            <polymorphic>ATTGAAATGGATCCGATTGCAATGCGTGCTTCAGCTTGTCCAAATCCAACTCACGGGGTCTCCCAGAGCGATCCTTTTCATCGAGCGAGAAGTCATCTTTTTCGAAACGATGGAACCAATTGCGAATAGTATTGTAGTGAGGGGCATGTGTGTTGTACACATTCTTCAAGAAAGTTTCCGAATCCTTCATCGTGGTGTGAGATAGGAAGAGGTAAATCAAAACATGTCTGATGTGAATAGCAGTGGGAACAAACATATCGTTTCAATTACAGATGAGGAGCAGGGAAGGAAATGGGGACTTGTTTATATGGAAGGTTCTTATCACCTTGTTATTCACTAGAGTCGATATCATACACAGCCTCCATATACGAGAACAGTGATTAAACAAACAGAGTGACAAAGACTTTCCCGCCAACCTAATATTTACATATGTATTATACCTGGGTCAAAAAGTATAGAATCTGGAAAAAAGCATAAGGTTCGGCCTAGGTCTCGTTTGRGTGCTTTTTAAGTATGCATCAAAAAACTTACAAAAATAGTATTGCAGTGGATAGCGTTGAGCACGAGATGCTAGAGCTTTCACAACAACACGATGCCTTCAATCGGGATTTGAACGTAGACATGATCCAGGAAACTGACTATGCCTCACATCACGATTTGATGAGATTGATTGCTGCTCAAAATCCGGAGGCCGCTGAGGATATTTTGAGAAACCACAAAATCAAGCATCCATTGGCAATGGAGAAGCAGCGAGAGTTGTTCTCTCTTCGTCCCACAGTTTTCCAGTTTTTCGTCGAGATCGTTGTGAACAAGGACCACCCGTTCCATCGTTTGAAACAATACCAAACACTTCTGTCTCTCATGACTGACCTCTACCCATCAGTTATGGCTGACGCTGAGCATGTTCTCTTCTGGGAGCGATTGCTCGATGCTGCTGTTTTCAACTTTGCTAACTGTCAATGTGTCAATGAAGCTTTGAAAATTGAGGATCAACCACTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATTATACCTGGGTCAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CAATCAATCTCATCAAATCGT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TGTATTATACCTGGGTCAAAAAGTATAGAATCTGGAAAAAAGCATAAGGTTCGGCCTAGGTCTCGTTTGAGTGCTTTTTAAGTATGCATCAAAAAACTTACAAAAATAGTATTGCAGTGGATAGCGTTGAGCACGAGATGCTAGAGCTTTCACAACAACACGATGCCTTCAATCGGGATTTGAACGTAGACATGATCCAGGAAACTGACTATGCCTCACATCACGATTTGATGAGATTGATTG</canonical_amplicon>
		<polymorphic_amplicon>TGTATTATACCTGGGTCAAAAAGTATAGAATCTGGAAAAAAGCATAAGGTTCGGCCTAGGTCTCGTTTGRGTGCTTTTTAAGTATGCATCAAAAAACTTACAAAAATAGTATTGCAGTGGATAGCGTTGAGCACGAGATGCTAGAGCTTTCACAACAACACGATGCCTTCAATCGGGATTTGAACGTAGACATGATCCAGGAAACTGACTATGCCTCACATCACGATTTGATGAGATTGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34804</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>68521</contig_pos>
        <strand>+</strand>
        <context>AATTATCTAT[G/T]TTTTGTTATT</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTTCGGCTAATTAGGGAATTTCATTTTCCACATTGCTGCAATTATCTAT</left_flank>
        <right_flank>TTTTGTTATTTTTTTTTGAAAATTGTTTTTTTGAAAAAACAAGGAGTGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACCTTGTCCTCTTTTTTTTCCACCTCCTACTCTTTTTCTACTTGTTCTTCTCATTTTCTCACCACTTTTCTTCTTCTTTATCTTCTACCACCAAAGATTTTCACTAGTCTTTTTTTTGTTTTTTAACACCCGTTTGTCCTTGTGCCCTTTGAGTTTGTAGGGCAAAAATATTTATAAAAATTGCCTCCCGGAAAACTCAAAATAAAATATAAGGCAGGGAGCGTGATGTCTTAACAACCGAATGTCCTCGATTTGAACTTCTAGTCCTGCTAAGTTGTTTAAAAAAGTTTTTATGATCCAACGATTTAGGTCGTAAAATTCAGCGTATTAGCCTAAATTGACCATTCAAAAACAAGCTTCTTTAAAGTTCATAACAGTTTGAAATTAACCTCTCTAGATTAGTTTTGGAATAGAAACCTAAAAAAGTGTAAATTACTGAATTCCAATCTTTCGGCTAATTAGGGAATTTCATTTTCCACATTGCTGCAATTATCTATATTTTGTTATTTTTTTTTGAAAATTGTTTTTTTGAAAAAACAAGGAGTGCTTTGTTCTCTTTCAGCAAACTCGTGCATTTCCAGTGCTTTCTTATCAAAACAAAAATATCTGCACTAATAGGAATTGCCCAGTGAACGTTTGTTTTTGTTTGATCTAGAAGTACCGTCTCTTTTCTGAATAATGTCAGAAACCACAACGTTTGAAAGTCTATTTAATCGAAAAATTTTAAATATGTAGTCGAAAAATTGTTCTTATAATCTAATGCAGATTATGCAATACAATCAAACAAAGTGCTCTCTTCCTTTTTGAAATCCAAGTATCCCTTTTTCTCATTCCCTAATCCGTTGTTGGATTTGAGCCAAAGGATCACAGAAGCATCCGTCTTGTACTCCCTTTTCAGTGAGAACTCCACTAATAATATATTCCATGCATACTTTCTTTTGTCCTTTTCCTGGAACTCTCTGGTCACGTCTTTGAACTACCATAACATTAGTCTAACG</canonical>
            <polymorphic>CCACCTTGTCCTCTTTTTTTTCCACCTCCTACTCTTTTTCTACTTGTTCTTCTCATTTTCTCACCACTTTTCTTCTTCTTTATCTTCTACCACCAAAGATTTTCACTAGTCTTTTTTTTGTTTTTTAACACCCGTTTGTCCTTGTGCCCTTTGAGTTTGTAGGGCAAAAATATTTATAAAAATTGCCTCCCGGAAAACTCAAAATAAAATATAAGGCAGGGAGCGTGATGTCTTAACAACCGAATGTCCTCGATTTGAACTTCTAGTCCTGCTAAGTTGTTTAAAAAAGTTTTTATGATCCAACGATTTAGGTCGTAAAATTCAGCGTATTAGCCTAAATTGACCATTCAAAAACAAGCTTCTTTAAAGTTCATAACAGTTTGAAATTAACCTCTCTAGATTAGTTTTGGAATAGAAACCTAAAAAAGTGTAAATTACTGAATTCCAATCTTTCGGCTAATTAGGGAATTTCATTTTCCACATTGCTGCAATTATCTATKTTTTGTTATTTTTTTTTGAAAATTGTTTTTTTGAAAAAACAAGGAGTGCTTTGTTCTCTTTCAGCAAACTCGTGCATTTCCAGTGCTTTCTTATCAAAACAAAAATATCTGCACTAATAGGAATTGCCCAGTGAACGTTTGTTTTTGTTTGATCTAGAAGTACCGTCTCTTTTCTGAATAATGTCAGAAACCACAACGTTTGAAAGTCTATTTAATCGAAAAATTTTAAATATGTAGTCGAAAAATTGTTCTTATAATCTAATGCAGATTATGCAATACAATCAAACAAAGTGCTCTCTTCCTTTTTGAAATCCAAGTATCCCTTTTTCTCATTCCCTAATCCGTTGTTGGATTTGAGCCAAAGGATCACAGAAGCATCCGTCTTGTACTCCCTTTTCAGTGAGAACTCCACTAATAATATATTCCATGCATACTTTCTTTTGTCCTTTTCCTGGAACTCTCTGGTCACGTCTTTGAACTACCATAACATTAGTCTAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGCTTCTTTAAAGTTCATAACAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTTTTGATAAGAAAGCACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAGCTTCTTTAAAGTTCATAACAGTTTGAAATTAACCTCTCTAGATTAGTTTTGGAATAGAAACCTAAAAAAGTGTAAATTACTGAATTCCAATCTTTCGGCTAATTAGGGAATTTCATTTTCCACATTGCTGCAATTATCTATATTTTGTTATTTTTTTTTGAAAATTGTTTTTTTGAAAAAACAAGGAGTGCTTTGTTCTCTTTCAGCAAACTCGTGCATTTCCAGTGCTTTCTTATCAAAACAAAA</canonical_amplicon>
		<polymorphic_amplicon>CAAGCTTCTTTAAAGTTCATAACAGTTTGAAATTAACCTCTCTAGATTAGTTTTGGAATAGAAACCTAAAAAAGTGTAAATTACTGAATTCCAATCTTTCGGCTAATTAGGGAATTTCATTTTCCACATTGCTGCAATTATCTATKTTTTGTTATTTTTTTTTGAAAATTGTTTTTTTGAAAAAACAAGGAGTGCTTTGTTCTCTTTCAGCAAACTCGTGCATTTCCAGTGCTTTCTTATCAAAACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34805</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>87217</contig_pos>
        <strand>+</strand>
        <context>TCTCATTTTT[C/T]CAGCAGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAACTTATGAGAGTATTTGTTTTATTTTTCATCGCTGATTCTCATTTTT</left_flank>
        <right_flank>CAGCAGAAAACCGTTTATAATTTATAAACTGTTTCGAATAAAACTTAGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAACTGAGCTTAATATCAGAATTATTTCGATGACCTTATATAGAAATAAAAAATAAGCGGAGCAAATTTATGTGCGTCAAAGTTTTTTTGAGTAGTGGTTGTCCACGTCAAAATACGGGGTGACCTAAGCCAATGAATTTTCACTACTTCTGTATAGTAACTTATGGGGTTATTCGGAAAGAATCAATTTTGCTGACTTGCTTCTTCACTGAATAACCCCATTGGGTTCAGACAAAGATAGTTCCTGTTAGAAGTTTTTGTGCAGGGTTTTTGTTTAAGTTGACAATCTTCACTATTAGTCTACCTTAAAAATTATTATGAATCAAACCGTAGCGGATTTTCTATTTGGAAAATAAAACTATTAAACTCTTCTTTCAGTGATGTACAGTATTTGAATTGATTTGCGTCACTGTTAAAAAAGTTTCCATGCAAATCAAACTTGAAACAAACTTATGAGAGTATTTGTTTTATTTTTCATCGCTGATTCTCATTTTTCCAGCAGAAAACCGTTTATAATTTATAAACTGTTTCGAATAAAACTTAGATTCATATGAGAAGGCTGAAACCAAAAAAAAAACGATTTTTCTTCGAAATCATTTTTATCTGAAAAAGTGTATAGATTTAATTACCACCTGCGCATTTTACTATTCCTATCTCAAAATAGAATTTTGATCTTTCAGCAGCAAGCTATAACTGATCATATTTCTACAGTCAACCTGTAATAAAACAGAGAATCGAGTTCTGAGCAAAACACATCAGCGAAAAACCGCTGACATAGAGTTTCTTAGTAGTACAAATCTAACAATTAGTTGACGTGTTTGTAGACACAAAAAAGAAACACACGGAAAAGAAGAGAGAAAATTGAATTACTAAAATTAGGGGAAGCAAGGTCAAGGTTTCATCCTGAGATTTGGTGTATGGTCATTCTTGGTTTTTCATTTCTAACAAGAAATTAAACAACAAGAGAAATTCAGAAATCTAGAGTGTTCAGTAGAC</canonical>
            <polymorphic>AAAAAAACTGAGCTTAATATCAGAATTATTTCGATGACCTTATATAGAAATAAAAAATAAGCGGAGCAAATTTATGTGCGTCAAAGTTTTTTTGAGTAGTGGTTGTCCACGTCAAAATACGGGGTGACCTAAGCCAATGAATTTTCACTACTTCTGTATAGTAACTTATGGGGTTATTCGGAAAGAATCAATTTTGCTGACTTGCTTCTTCACTGAATAACCCCATTGGGTTCAGACAAAGATAGTTCCTGTTAGAAGTTTTTGTGCAGGGTTTTTGTTTAAGTTGACAATCTTCACTATTAGTCTACCTTAAAAATTATTATGAATCAAACCGTAGCGGATTTTCTATTTGGAAAATAAAACTATTAAACTCTTCTTTCAGTGATGTACAGTATTTGAATTGATTTGCGTCACTGTTAAAAAAGTTTCCATGCAAATCAAACTTGAAACAAACTTATGAGAGTATTTGTTTTATTTTTCATCGCTGATTCTCATTTTTYCAGCAGAAAACCGTTTATAATTTATAAACTGTTTCGAATAAAACTTAGATTCATATGAGAAGGCTGAAACCAAAAAAAAAACGATTTTTCTTCGAAATCATTTTTATCTGAAAAAGTGTATAGATTTAATTACCACCTGCGCATTTTACTATTCCTATCTCAAAATAGAATTTTGATCTTTCAGCAGCAAGCTATAACTGATCATATTTCTACAGTCAACCTGTAATAAAACAGAGAATCGAGTTCTGAGCAAAACACATCAGCGAAAAACCGCTGACATAGAGTTTCTTAGTAGTACAAATCTAACAATTAGTTGACGTGTTTGTAGACACAAAAAAGAAACACACGGAAAAGAAGAGAGAAAATTGAATTACTAAAATTAGGGGAAGCAAGGTCAAGGTTTCATCCTGAGATTTGGTGTATGGTCATTCTTGGTTTTTCATTTCTAACAAGAAATTAAACAACAAGAGAAATTCAGAAATCTAGAGTGTTCAGTAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAATCAAACTTGAAACAAACTT</pcr_primer_p1>
		<pcr_primer_p2>TGCTGAAAGATCAAAATTCTATT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CAAATCAAACTTGAAACAAACTTATGAGAGTATTTGTTTTATTTTTCATCGCTGATTCTCATTTTTCCAGCAGAAAACCGTTTATAATTTATAAACTGTTTCGAATAAAACTTAGATTCATATGAGAAGGCTGAAACCAAAAAAAAAACGATTTTTCTTCGAAATCATTTTTATCTGAAAAAGTGTATAGATTTAATTACCACCTGCGCATTTTACTATTCCTATCTCAAAATAGAATTTTGATCTTTCAGCA</canonical_amplicon>
		<polymorphic_amplicon>CAAATCAAACTTGAAACAAACTTATGAGAGTATTTGTTTTATTTTTCATCGCTGATTCTCATTTTTYCAGCAGAAAACCGTTTATAATTTATAAACTGTTTCGAATAAAACTTAGATTCATATGAGAAGGCTGAAACCAAAAAAAAAACGATTTTTCTTCGAAATCATTTTTATCTGAAAAAGTGTATAGATTTAATTACCACCTGCGCATTTTACTATTCCTATCTCAAAATAGAATTTTGATCTTTCAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34806</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>114806</contig_pos>
        <strand></strand>
        <context>TTGAGCATTT[T/A]GGTTACTGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATTCAAAAAATATGTCCCGAAATACATCTATTCTAGAGAATTGAGCATTT</left_flank>
        <right_flank>GGTTACTGTAATAAAATAAATATAATGTTAAAATTCAAAAACCTTGTCTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGTTTCTCCATGATGTGTCACTTTGATGAAAAACCAAACTTTGACATTGCCTTCATCTATCTTGTTTCCACTTTGTTGCAAACTCCAAAAGGACGATGACATAGAAGAAGAACCCCATTGGTCTCTGGGGAGCCCGTAAGAAATAGAAGACGGGTAGAAGAAAAGTTGAACAAGACGTAGAAGAAGGCGTTACGCGAATAATAGAAGTAGTTTTGTCGACAAGTATTAGTTACGGATATGACCCAATTACCCATTGAAACGCACTTATTGTTAAAAGTGCAACATGGAATGGAAGGGAAGAGCAAGCAATTAGGATAGTTTGAAATGACTTAACAGTTGTTTTGAAATGACTTAACAATTGAACAGAAGATTTTTTATCCTGATCATTTTAACTCATGCGTGTTATTCGACTCTTAGCCTCAATCAGAAGCATGTCTTTTTTTGGTATTCAAAAAATATGTCCCGAAATACATCTATTCTAGAGAATTGAGCATTTTGGTTACTGTAATAAAATAAATATAATGTTAAAATTCAAAAACCTTGTCTTGTTTTTCAAATATAAAATCTCTACGCATCGATGCAATACAAATCAAGTATGTTTTTAAAAAGAGCTAAAAAGCGCGTTTTATTTCGGCGCAACAAAGAATAACAAGAACATACATTATTTTCTCCGATTATGCTTCTGGGGATATATCCATCGCTTCAAATACAAATACCAGGCGTCAAAAAGAGGATATGGGGTAAAAGAGGAAAGTCTGTGGAAACTCGAGAACAACCCCGACGGCGCTGGTGACGATGGGTTGAGGAATAGGTGCCATCATAAAAGTACGTATTGAGTGTCATAGAAAGCGAAGAGGAACCTATTCTCATCTCTGATGGCGTAGTGCCGACGCGAGTTCAAAGAGGAAGAGATGGGTAGAGGACTCTTAAAATGGCACACATGTGCGCAAAATGAGAAAAATGGTGCAATTGCACATTTCAGTTTTAATTTACAACA</canonical>
            <polymorphic>AATTGTTTCTCCATGATGTGTCACTTTGATGAAAAACCAAACTTTGACATTGCCTTCATCTATCTTGTTTCCACTTTGTTGCAAACTCCAAAAGGACGATGACATAGAAGAAGAACCCCATTGGTCTCTGGGGAGCCCGTAAGAAATAGAAGACGGGTAGAAGAAAAGTTGAACAAGACGTAGAAGAAGGCGTTACGCGAATAATAGAAGTAGTTTTGTCGACAAGTATTAGTTACGGATATGACCCAATTACCCATTGAAACGCACTTATTGTTAAAAGTGCAACATGGAATGGAAGGGAAGAGCAAGCAATTAGGATAGTTTGAAATGACTTAACAGTTGTTTTGAAATGACTTAACAATTGAACAGAAGATTTTTTATCCTGATCATTTTAACTCATGCGTGTTATTCGACTCTTAGCCTCAATCAGAAGCATGTCTTTTTTTGGTATTCAAAAAATATGTCCCGAAATACATCTATTCTAGAGAATTGAGCATTTWGGTTACTGTAATAAAATAAATATAATGTTAAAATTCAAAAACCTTGTCTTGTTTTTCAAATATAAAATCTCTACGCATCGATGCAATACAAATCAAGTATGTTTTTAAAAAGAGCTAAAAAGCGCGTTTTATTTCGGCGCAACAAAGAATAACAAGAACATACATTATTTTCTCCGATTATGCTTCTGGGGATATATCCATCGCTTCAAATACAAATACCAGGCGTCAAAAAGAGGATATGGGGTAAAAGAGGAAAGTCTGTGGAAACTCGAGAACAACCCCGACGGCGCTGGTGACGATGGGTTGAGGAATAGGTGCCATCATAAAAGTACGTATTGAGTGTCATAGAAAGCGAAGAGGAACCTATTCTCATCTCTGATGGCGTAGTGCCGACGCGAGTTCAAAGAGGAAGAGATGGGTAGAGGACTCTTAAAATGGCACACATGTGCGCAAAATGAGAAAAATGGTGCAATTGCACATTTCAGTTTTAATTTACAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAATTAGGATAGTTTGAAATGA</pcr_primer_p1>
		<pcr_primer_p2>AAAACAAGACAAGGTTTTTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GCAATTAGGATAGTTTGAAATGACTTAACAGTTGTTTTGAAATGACTTAACAATTGAACAGAAGATTTTTTATCCTGATCATTTTAACTCATGCGTGTTATTCGACTCTTAGCCTCAATCAGAAGCATGTCTTTTTTTGGTATTCAAAAAATATGTCCCGAAATACATCTATTCTAGAGAATTGAGCATTTTGGTTACTGTAATAAAATAAATATAATGTTAAAATTCAAAAACCTTGTCTTGTTTT</canonical_amplicon>
		<polymorphic_amplicon>GCAATTAGGATAGTTTGAAATGACTTAACAGTTGTTTTGAAATGACTTAACAATTGAACAGAAGATTTTTTATCCTGATCATTTTAACTCATGCGTGTTATTCGACTCTTAGCCTCAATCAGAAGCATGTCTTTTTTTGGTATTCAAAAAATATGTCCCGAAATACATCTATTCTAGAGAATTGAGCATTTWGGTTACTGTAATAAAATAAATATAATGTTAAAATTCAAAAACCTTGTCTTGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34807</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>115095</contig_pos>
        <strand></strand>
        <context>CCCCGACGGC[G/A]CTGGTGACGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATGGGGTAAAAGAGGAAAGTCTGTGGAAACTCGAGAACAACCCCGACGGC</left_flank>
        <right_flank>CTGGTGACGATGGGTTGAGGAATAGGTGCCATCATAAAAGTACGTATTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATGGAAGGGAAGAGCAAGCAATTAGGATAGTTTGAAATGACTTAACAGTTGTTTTGAAATGACTTAACAATTGAACAGAAGATTTTTTATCCTGATCATTTTAACTCATGCGTGTTATTCGACTCTTAGCCTCAATCAGAAGCATGTCTTTTTTTGGTATTCAAAAAATATGTCCCGAAATACATCTATTCTAGAGAATTGAGCATTTTGGTTACTGTAATAAAATAAATATAATGTTAAAATTCAAAAACCTTGTCTTGTTTTTCAAATATAAAATCTCTACGCATCGATGCAATACAAATCAAGTATGTTTTTAAAAAGAGCTAAAAAGCGCGTTTTATTTCGGCGCAACAAAGAATAACAAGAACATACATTATTTTCTCCGATTATGCTTCTGGGGATATATCCATCGCTTCAAATACAAATACCAGGCGTCAAAAAGAGGATATGGGGTAAAAGAGGAAAGTCTGTGGAAACTCGAGAACAACCCCGACGGCGCTGGTGACGATGGGTTGAGGAATAGGTGCCATCATAAAAGTACGTATTGAGTGTCATAGAAAGCGAAGAGGAACCTATTCTCATCTCTGATGGCGTAGTGCCGACGCGAGTTCAAAGAGGAAGAGATGGGTAGAGGACTCTTAAAATGGCACACATGTGCGCAAAATGAGAAAAATGGTGCAATTGCACATTTCAGTTTTAATTTACAACAAGGTGGAGCAGAGCCGAGGAGAAGAAAAAAGGGCTCTTTTCTAGTTTAGAGGTCCCAAAAAAATTTAGAGGTCCGAAAAAAAATTAGAGGTCTCAAAATAAAATAGAGGTCCGAAAAAAAATTAGAGGTCTCAAAAAAGTTTAGAGGTCCCAAGAAAAAATAGAGGTCCAAAATACGAAAAACGCGCAGATGTTGGAATATGGTACTAGTATTTGAACTGTGCGAGTAGTTTGAGTTTTAGGGTCTTATAGGATGACAAGACTACTCCTAACAATTTTAGCTCCAATTC</canonical>
            <polymorphic>GAATGGAAGGGAAGAGCAAGCAATTAGGATAGTTTGAAATGACTTAACAGTTGTTTTGAAATGACTTAACAATTGAACAGAAGATTTTTTATCCTGATCATTTTAACTCATGCGTGTTATTCGACTCTTAGCCTCAATCAGAAGCATGTCTTTTTTTGGTATTCAAAAAATATGTCCCGAAATACATCTATTCTAGAGAATTGAGCATTTTGGTTACTGTAATAAAATAAATATAATGTTAAAATTCAAAAACCTTGTCTTGTTTTTCAAATATAAAATCTCTACGCATCGATGCAATACAAATCAAGTATGTTTTTAAAAAGAGCTAAAAAGCGCGTTTTATTTCGGCGCAACAAAGAATAACAAGAACATACATTATTTTCTCCGATTATGCTTCTGGGGATATATCCATCGCTTCAAATACAAATACCAGGCGTCAAAAAGAGGATATGGGGTAAAAGAGGAAAGTCTGTGGAAACTCGAGAACAACCCCGACGGCRCTGGTGACGATGGGTTGAGGAATAGGTGCCATCATAAAAGTACGTATTGAGTGTCATAGAAAGCGAAGAGGAACCTATTCTCATCTCTGATGGCGTAGTGCCGACGCGAGTTCAAAGAGGAAGAGATGGGTAGAGGACTCTTAAAATGGCACACATGTGCGCAAAATGAGAAAAATGGTGCAATTGCACATTTCAGTTTTAATTTACAACAAGGTGGAGCAGAGCCGAGGAGAAGAAAAAAGGGCTCTTTTCTAGTTTAGAGGTCCCAAAAAAATTTAGAGGTCCGAAAAAAAATTAGAGGTCTCAAAATAAAATAGAGGTCCGAAAAAAAATTAGAGGTCTCAAAAAAGTTTAGAGGTCCCAAGAAAAAATAGAGGTCCAAAATACGAAAAACGCGCAGATGTTGGAATATGGTACTAGTATTTGAACTGTGCGAGTAGTTTGAGTTTTAGGGTCTTATAGGATGACAAGACTACTCCTAACAATTTTAGCTCCAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>335 236 161 150 103 15</canonical_bands>
                <polymorphic_bands>335 311 236 103 15</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATATCCATCGCTTCAAATACA</pcr_primer_p1>
		<pcr_primer_p2>GTGCCATTTTAAGAGTCCTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATATCCATCGCTTCAAATACAAATACCAGGCGTCAAAAAGAGGATATGGGGTAAAAGAGGAAAGTCTGTGGAAACTCGAGAACAACCCCGACGGCGCTGGTGACGATGGGTTGAGGAATAGGTGCCATCATAAAAGTACGTATTGAGTGTCATAGAAAGCGAAGAGGAACCTATTCTCATCTCTGATGGCGTAGTGCCGACGCGAGTTCAAAGAGGAAGAGATGGGTAGAGGACTCTTAAAATGGCAC</canonical_amplicon>
		<polymorphic_amplicon>ATATATCCATCGCTTCAAATACAAATACCAGGCGTCAAAAAGAGGATATGGGGTAAAAGAGGAAAGTCTGTGGAAACTCGAGAACAACCCCGACGGCRCTGGTGACGATGGGTTGAGGAATAGGTGCCATCATAAAAGTACGTATTGAGTGTCATAGAAAGCGAAGAGGAACCTATTCTCATCTCTGATGGCGTAGTGCCGACGCGAGTTCAAAGAGGAAGAGATGGGTAGAGGACTCTTAAAATGGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34808</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>115192</contig_pos>
        <strand></strand>
        <context>CTGATGGCGT[A/G]GTGCCGACGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAGTGTCATAGAAAGCGAAGAGGAACCTATTCTCATCTCTGATGGCGT</left_flank>
        <right_flank>GTGCCGACGCGAGTTCAAAGAGGAAGAGATGGGTAGAGGACTCTTAAAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATTTTAACTCATGCGTGTTATTCGACTCTTAGCCTCAATCAGAAGCATGTCTTTTTTTGGTATTCAAAAAATATGTCCCGAAATACATCTATTCTAGAGAATTGAGCATTTTGGTTACTGTAATAAAATAAATATAATGTTAAAATTCAAAAACCTTGTCTTGTTTTTCAAATATAAAATCTCTACGCATCGATGCAATACAAATCAAGTATGTTTTTAAAAAGAGCTAAAAAGCGCGTTTTATTTCGGCGCAACAAAGAATAACAAGAACATACATTATTTTCTCCGATTATGCTTCTGGGGATATATCCATCGCTTCAAATACAAATACCAGGCGTCAAAAAGAGGATATGGGGTAAAAGAGGAAAGTCTGTGGAAACTCGAGAACAACCCCGACGGCGCTGGTGACGATGGGTTGAGGAATAGGTGCCATCATAAAAGTACGTATTGAGTGTCATAGAAAGCGAAGAGGAACCTATTCTCATCTCTGATGGCGTAGTGCCGACGCGAGTTCAAAGAGGAAGAGATGGGTAGAGGACTCTTAAAATGGCACACATGTGCGCAAAATGAGAAAAATGGTGCAATTGCACATTTCAGTTTTAATTTACAACAAGGTGGAGCAGAGCCGAGGAGAAGAAAAAAGGGCTCTTTTCTAGTTTAGAGGTCCCAAAAAAATTTAGAGGTCCGAAAAAAAATTAGAGGTCTCAAAATAAAATAGAGGTCCGAAAAAAAATTAGAGGTCTCAAAAAAGTTTAGAGGTCCCAAGAAAAAATAGAGGTCCAAAATACGAAAAACGCGCAGATGTTGGAATATGGTACTAGTATTTGAACTGTGCGAGTAGTTTGAGTTTTAGGGTCTTATAGGATGACAAGACTACTCCTAACAATTTTAGCTCCAATTCTCTCGCATCTTGCCGATGAACCCCAATTTACATATGAGGAAAATTTGGGCAATACAGTAATCACACCGTGATTATGCTGTCTCTCAGGCTTAGATAA</canonical>
            <polymorphic>TCATTTTAACTCATGCGTGTTATTCGACTCTTAGCCTCAATCAGAAGCATGTCTTTTTTTGGTATTCAAAAAATATGTCCCGAAATACATCTATTCTAGAGAATTGAGCATTTTGGTTACTGTAATAAAATAAATATAATGTTAAAATTCAAAAACCTTGTCTTGTTTTTCAAATATAAAATCTCTACGCATCGATGCAATACAAATCAAGTATGTTTTTAAAAAGAGCTAAAAAGCGCGTTTTATTTCGGCGCAACAAAGAATAACAAGAACATACATTATTTTCTCCGATTATGCTTCTGGGGATATATCCATCGCTTCAAATACAAATACCAGGCGTCAAAAAGAGGATATGGGGTAAAAGAGGAAAGTCTGTGGAAACTCGAGAACAACCCCGACGGCGCTGGTGACGATGGGTTGAGGAATAGGTGCCATCATAAAAGTACGTATTGAGTGTCATAGAAAGCGAAGAGGAACCTATTCTCATCTCTGATGGCGTRGTGCCGACGCGAGTTCAAAGAGGAAGAGATGGGTAGAGGACTCTTAAAATGGCACACATGTGCGCAAAATGAGAAAAATGGTGCAATTGCACATTTCAGTTTTAATTTACAACAAGGTGGAGCAGAGCCGAGGAGAAGAAAAAAGGGCTCTTTTCTAGTTTAGAGGTCCCAAAAAAATTTAGAGGTCCGAAAAAAAATTAGAGGTCTCAAAATAAAATAGAGGTCCGAAAAAAAATTAGAGGTCTCAAAAAAGTTTAGAGGTCCCAAGAAAAAATAGAGGTCCAAAATACGAAAAACGCGCAGATGTTGGAATATGGTACTAGTATTTGAACTGTGCGAGTAGTTTGAGTTTTAGGGTCTTATAGGATGACAAGACTACTCCTAACAATTTTAGCTCCAATTCTCTCGCATCTTGCCGATGAACCCCAATTTACATATGAGGAAAATTTGGGCAATACAGTAATCACACCGTGATTATGCTGTCTCTCAGGCTTAGATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATATCCATCGCTTCAAATACA</pcr_primer_p1>
		<pcr_primer_p2>GTGCCATTTTAAGAGTCCTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATATCCATCGCTTCAAATACAAATACCAGGCGTCAAAAAGAGGATATGGGGTAAAAGAGGAAAGTCTGTGGAAACTCGAGAACAACCCCGACGGCGCTGGTGACGATGGGTTGAGGAATAGGTGCCATCATAAAAGTACGTATTGAGTGTCATAGAAAGCGAAGAGGAACCTATTCTCATCTCTGATGGCGTAGTGCCGACGCGAGTTCAAAGAGGAAGAGATGGGTAGAGGACTCTTAAAATGGCAC</canonical_amplicon>
		<polymorphic_amplicon>ATATATCCATCGCTTCAAATACAAATACCAGGCGTCAAAAAGAGGATATGGGGTAAAAGAGGAAAGTCTGTGGAAACTCGAGAACAACCCCGACGGCGCTGGTGACGATGGGTTGAGGAATAGGTGCCATCATAAAAGTACGTATTGAGTGTCATAGAAAGCGAAGAGGAACCTATTCTCATCTCTGATGGCGTRGTGCCGACGCGAGTTCAAAGAGGAAGAGATGGGTAGAGGACTCTTAAAATGGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34809</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>138244</contig_pos>
        <strand>+</strand>
        <context>AAAAAAGTAT[A/G]TACTGGGTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATATGCAAACCAAATAGATTGGTCACATACTCACCCACAAAAAAGTAT</left_flank>
        <right_flank>TACTGGGTGAAACAATAAGTTCAGTGGTCTGAAAGGGAATCCATTGTGTC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTTATCTTGAAGTTTGTAATTTCGTTTTTCAAAAATTAAACTTGTATGATGTCAACCTGTAATGACATAAATATATTTTACAAGAGTGTCACACTCATCGACTTCACAATATCAGAACGGTTTGACGATCTCTTTAGGACTCAGATTTTCTTTCTTTTTTGTTTATGCCCTTACCCTTCTGCCCCTCACCTTTTCATATTTAGAAAATTATACCAATTTTCACATATTTCTTCAATATGACGTGATTCCTTTAGTCCTTCTCACCATATTCTTTGACACTAGCTTTCTTCTTTGCCCTCCGCTCTCCTTTTCTTTCCAACTTCCACCCATAAATAATGATAATATGAGAAAACGTCCCTCAGTTCCCATCACTTCATTCATTCTCATTCATAGGCACTCGCTTTCCTTGGGTGATAACGTACCCTTCGAGGATTCCCGACTGGGAAAAAATATGCAAACCAAATAGATTGGTCACATACTCACCCACAAAAAAGTATATACTGGGTGAAACAATAAGTTCAGTGGTCTGAAAGGGAATCCATTGTGTCCCTTTAAAAAAATAAGTCGGAGCGCCCCCACGAGATCCCTGAGTAAAAAGTCTTAAAAAAATGACTATCTGTGACTTATTCAAAGGACACCAGGGTAGATTCAAGACATGCAGACAAGAATCCTTTTTCCATCATTTTCTGATTAAGAAAACCTAGCAAAAAATAAAAAAAAGTATTACCTGATGAATAAATCACAACATTTGAACACCTAGGATTCAAATATTCCGCCGTATGTTTTCCTTTTTTCTTAGTCTGAAGAGTTTTTCTGCAAGTTCCTGATTCTGACGTGACTAGGGAATTTTCAGAAGTCAGTTTCTTTTGCGAAAAACACAACTTGTTTTTTTTTTTGATAAATTTAAAATCTGGAAAAATTTAGGAAACATTTGATGACAATCGTATTTTCAAAAATGGAACGATTTGATTTTTTTTTGTCCTACTTTGTCATTTTTT</canonical>
            <polymorphic>TCTTTATCTTGAAGTTTGTAATTTCGTTTTTCAAAAATTAAACTTGTATGATGTCAACCTGTAATGACATAAATATATTTTACAAGAGTGTCACACTCATCGACTTCACAATATCAGAACGGTTTGACGATCTCTTTAGGACTCAGATTTTCTTTCTTTTTTGTTTATGCCCTTACCCTTCTGCCCCTCACCTTTTCATATTTAGAAAATTATACCAATTTTCACATATTTCTTCAATATGACGTGATTCCTTTAGTCCTTCTCACCATATTCTTTGACACTAGCTTTCTTCTTTGCCCTCCGCTCTCCTTTTCTTTCCAACTTCCACCCATAAATAATGATAATATGAGAAAACGTCCCTCAGTTCCCATCACTTCATTCATTCTCATTCATAGGCACTCGCTTTCCTTGGGTGATAACGTACCCTTCGAGGATTCCCGACTGGGAAAAAATATGCAAACCAAATAGATTGGTCACATACTCACCCACAAAAAAGTATRTACTGGGTGAAACAATAAGTTCAGTGGTCTGAAAGGGAATCCATTGTGTCCCTTTAAAAAAATAAGTCGGAGCGCCCCCACGAGATCCCTGAGTAAAAAGTCTTAAAAAAATGACTATCTGTGACTTATTCAAAGGACACCAGGGTAGATTCAAGACATGCAGACAAGAATCCTTTTTCCATCATTTTCTGATTAAGAAAACCTAGCAAAAAATAAAAAAAAGTATTACCTGATGAATAAATCACAACATTTGAACACCTAGGATTCAAATATTCCGCCGTATGTTTTCCTTTTTTCTTAGTCTGAAGAGTTTTTCTGCAAGTTCCTGATTCTGACGTGACTAGGGAATTTTCAGAAGTCAGTTTCTTTTGCGAAAAACACAACTTGTTTTTTTTTTTGATAAATTTAAAATCTGGAAAAATTTAGGAAACATTTGATGACAATCGTATTTTCAAAAATGGAACGATTTGATTTTTTTTTGTCCTACTTTGTCATTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCTTGGGTGATAACGTA</pcr_primer_p1>
		<pcr_primer_p2>TGTCCTTTGAATAAGTCACAGAT</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TTTCCTTGGGTGATAACGTACCCTTCGAGGATTCCCGACTGGGAAAAAATATGCAAACCAAATAGATTGGTCACATACTCACCCACAAAAAAGTATATACTGGGTGAAACAATAAGTTCAGTGGTCTGAAAGGGAATCCATTGTGTCCCTTTAAAAAAATAAGTCGGAGCGCCCCCACGAGATCCCTGAGTAAAAAGTCTTAAAAAAATGACTATCTGTGACTTATTCAAAGGACA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCTTGGGTGATAACGTACCCTTCGAGGATTCCCGACTGGGAAAAAATATGCAAACCAAATAGATTGGTCACATACTCACCCACAAAAAAGTATRTACTGGGTGAAACAATAAGTTCAGTGGTCTGAAAGGGAATCCATTGTGTCCCTTTAAAAAAATAAGTCGGAGCGCCCCCACGAGATCCCTGAGTAAAAAGTCTTAAAAAAATGACTATCTGTGACTTATTCAAAGGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34810</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>138344</contig_pos>
        <strand>+</strand>
        <context>TGAGTAAAAA[A/G]TCTTAAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCTTTAAAAAAATAAGTCGGAGCGCCCCCACGAGATCCCTGAGTAAAAA</left_flank>
        <right_flank>TCTTAAAAAAATGACTATCTGTGACTTATTCAAAGGACACCAGGGTAGAT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACTTCACAATATCAGAACGGTTTGACGATCTCTTTAGGACTCAGATTTTCTTTCTTTTTTGTTTATGCCCTTACCCTTCTGCCCCTCACCTTTTCATATTTAGAAAATTATACCAATTTTCACATATTTCTTCAATATGACGTGATTCCTTTAGTCCTTCTCACCATATTCTTTGACACTAGCTTTCTTCTTTGCCCTCCGCTCTCCTTTTCTTTCCAACTTCCACCCATAAATAATGATAATATGAGAAAACGTCCCTCAGTTCCCATCACTTCATTCATTCTCATTCATAGGCACTCGCTTTCCTTGGGTGATAACGTACCCTTCGAGGATTCCCGACTGGGAAAAAATATGCAAACCAAATAGATTGGTCACATACTCACCCACAAAAAAGTATATACTGGGTGAAACAATAAGTTCAGTGGTCTGAAAGGGAATCCATTGTGTCCCTTTAAAAAAATAAGTCGGAGCGCCCCCACGAGATCCCTGAGTAAAAAGTCTTAAAAAAATGACTATCTGTGACTTATTCAAAGGACACCAGGGTAGATTCAAGACATGCAGACAAGAATCCTTTTTCCATCATTTTCTGATTAAGAAAACCTAGCAAAAAATAAAAAAAAGTATTACCTGATGAATAAATCACAACATTTGAACACCTAGGATTCAAATATTCCGCCGTATGTTTTCCTTTTTTCTTAGTCTGAAGAGTTTTTCTGCAAGTTCCTGATTCTGACGTGACTAGGGAATTTTCAGAAGTCAGTTTCTTTTGCGAAAAACACAACTTGTTTTTTTTTTTGATAAATTTAAAATCTGGAAAAATTTAGGAAACATTTGATGACAATCGTATTTTCAAAAATGGAACGATTTGATTTTTTTTTGTCCTACTTTGTCATTTTTTTAGTCAAGTCAGAATTGCTTGAAATAGCTATTGAATATCATCGGATCATGAAAAAGCTTCAACAAGACATAAAAAACCTTCTGATTATTATTAGCTCAAT</canonical>
            <polymorphic>CGACTTCACAATATCAGAACGGTTTGACGATCTCTTTAGGACTCAGATTTTCTTTCTTTTTTGTTTATGCCCTTACCCTTCTGCCCCTCACCTTTTCATATTTAGAAAATTATACCAATTTTCACATATTTCTTCAATATGACGTGATTCCTTTAGTCCTTCTCACCATATTCTTTGACACTAGCTTTCTTCTTTGCCCTCCGCTCTCCTTTTCTTTCCAACTTCCACCCATAAATAATGATAATATGAGAAAACGTCCCTCAGTTCCCATCACTTCATTCATTCTCATTCATAGGCACTCGCTTTCCTTGGGTGATAACGTACCCTTCGAGGATTCCCGACTGGGAAAAAATATGCAAACCAAATAGATTGGTCACATACTCACCCACAAAAAAGTATATACTGGGTGAAACAATAAGTTCAGTGGTCTGAAAGGGAATCCATTGTGTCCCTTTAAAAAAATAAGTCGGAGCGCCCCCACGAGATCCCTGAGTAAAAARTCTTAAAAAAATGACTATCTGTGACTTATTCAAAGGACACCAGGGTAGATTCAAGACATGCAGACAAGAATCCTTTTTCCATCATTTTCTGATTAAGAAAACCTAGCAAAAAATAAAAAAAAGTATTACCTGATGAATAAATCACAACATTTGAACACCTAGGATTCAAATATTCCGCCGTATGTTTTCCTTTTTTCTTAGTCTGAAGAGTTTTTCTGCAAGTTCCTGATTCTGACGTGACTAGGGAATTTTCAGAAGTCAGTTTCTTTTGCGAAAAACACAACTTGTTTTTTTTTTTGATAAATTTAAAATCTGGAAAAATTTAGGAAACATTTGATGACAATCGTATTTTCAAAAATGGAACGATTTGATTTTTTTTTGTCCTACTTTGTCATTTTTTTAGTCAAGTCAGAATTGCTTGAAATAGCTATTGAATATCATCGGATCATGAAAAAGCTTCAACAAGACATAAAAAACCTTCTGATTATTATTAGCTCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAGATTGGTCACATACTCACC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGCTAGGTTTTCTTAATCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATAGATTGGTCACATACTCACCCACAAAAAAGTATATACTGGGTGAAACAATAAGTTCAGTGGTCTGAAAGGGAATCCATTGTGTCCCTTTAAAAAAATAAGTCGGAGCGCCCCCACGAGATCCCTGAGTAAAAAGTCTTAAAAAAATGACTATCTGTGACTTATTCAAAGGACACCAGGGTAGATTCAAGACATGCAGACAAGAATCCTTTTTCCATCATTTTCTGATTAAGAAAACCTAGCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AATAGATTGGTCACATACTCACCCACAAAAAAGTATATACTGGGTGAAACAATAAGTTCAGTGGTCTGAAAGGGAATCCATTGTGTCCCTTTAAAAAAATAAGTCGGAGCGCCCCCACGAGATCCCTGAGTAAAAARTCTTAAAAAAATGACTATCTGTGACTTATTCAAAGGACACCAGGGTAGATTCAAGACATGCAGACAAGAATCCTTTTTCCATCATTTTCTGATTAAGAAAACCTAGCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34811</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>148770</contig_pos>
        <strand>+</strand>
        <context>AAGAGTAAAT[G/T]ATTGCGGTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGTTCTGTCAGACGAATTAAAAATTCATCCATAAAAAATGAAGAGTAAAT</left_flank>
        <right_flank>ATTGCGGTTCTTTTGAGCTACAAAATTCCAAAATATGTCGAAAACTGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTATAAGAATGATAAAGGGTCTTTCTAGGCTTTTTGGTACAGGTTCTAATCATTAAATTACTTTTTTTTTTGAACTGAAACATTTTGCTAGTTCAGCTGAATTCCAATATACGTACAAATCAAAATTCGTCCCAAAGTTGGACACTACACGGCCTCCCACAAAACATTTCCGAACTGAAAATAAAATTTTTGATATACCGAAAAAAATTGGGCGCGATCACAATTGCAAGTCTAAAGCCATATTTTCAGCATTTTTTATCTGATTTTGTGGAGATTCAAGACGATTCTAATGCTTCTAAAAAATTAATTAATGGTTATAGAATCCTGTATGGTCCTTTTCCGGTAAAAAATAATTTTTAATTCGTCTGACAGAACTTTTTTATAATCAAATAACAACGCAAAAATGCGATTTCGTGCAATTTCGTGAGGTTTTTTTTAATATAAAAAAGTTCTGTCAGACGAATTAAAAATTCATCCATAAAAAATGAAGAGTAAATTATTGCGGTTCTTTTGAGCTACAAAATTCCAAAATATGTCGAAAACTGAAAGAGGAGATACATTTTTTCTGTGTCAAACCTTGAAAATCGGTCATTTTTCGAATATTTTCTTTCGGAAAAGGACCATACAGGATTCTATAGCCACTAACTAATGAAAATATGGCTTTAGGCTTGTAATAGTGTTTGCGCCAAATTTTTTTCGGTAGATCAAACATTTTATTTTCAGTTCGGAAATATTTTGTGGGACCCCGTGCACTACCTTTCAAATTTTTCCAAACATATTGAGTTCTAACGGAAACGATTAATAATCTCGCATTTTTTAATCTAACAAAATACTCATTTCCAAACATACTAGCAATTTTTTCACACATACACAATACTAGATTTTTTTTCTTCTTCTCGTTTCATAACTCGCTGTCGAGACCCCCCCCCGACGACATTTTTTTAAAGGAAATAACAAATTTATCCGGCTCGGTTTTCAGCTGTCGGAGTTTCTCAAAT</canonical>
            <polymorphic>TTTTATAAGAATGATAAAGGGTCTTTCTAGGCTTTTTGGTACAGGTTCTAATCATTAAATTACTTTTTTTTTTGAACTGAAACATTTTGCTAGTTCAGCTGAATTCCAATATACGTACAAATCAAAATTCGTCCCAAAGTTGGACACTACACGGCCTCCCACAAAACATTTCCGAACTGAAAATAAAATTTTTGATATACCGAAAAAAATTGGGCGCGATCACAATTGCAAGTCTAAAGCCATATTTTCAGCATTTTTTATCTGATTTTGTGGAGATTCAAGACGATTCTAATGCTTCTAAAAAATTAATTAATGGTTATAGAATCCTGTATGGTCCTTTTCCGGTAAAAAATAATTTTTAATTCGTCTGACAGAACTTTTTTATAATCAAATAACAACGCAAAAATGCGATTTCGTGCAATTTCGTGAGGTTTTTTTTAATATAAAAAAGTTCTGTCAGACGAATTAAAAATTCATCCATAAAAAATGAAGAGTAAATKATTGCGGTTCTTTTGAGCTACAAAATTCCAAAATATGTCGAAAACTGAAAGAGGAGATACATTTTTTCTGTGTCAAACCTTGAAAATCGGTCATTTTTCGAATATTTTCTTTCGGAAAAGGACCATACAGGATTCTATAGCCACTAACTAATGAAAATATGGCTTTAGGCTTGTAATAGTGTTTGCGCCAAATTTTTTTCGGTAGATCAAACATTTTATTTTCAGTTCGGAAATATTTTGTGGGACCCCGTGCACTACCTTTCAAATTTTTCCAAACATATTGAGTTCTAACGGAAACGATTAATAATCTCGCATTTTTTAATCTAACAAAATACTCATTTCCAAACATACTAGCAATTTTTTCACACATACACAATACTAGATTTTTTTTCTTCTTCTCGTTTCATAACTCGCTGTCGAGACCCCCCCCCGACGACATTTTTTTAAAGGAAATAACAAATTTATCCGGCTCGGTTTTCAGCTGTCGGAGTTTCTCAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>167 103 91 80 74 61 59 57 46 44 44 42 27 26 24 21 16 7 7 4</canonical_bands>
                <polymorphic_bands>167 103 91 80 74 61 59 57 53 46 44 44 42 24 21 16 7 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGTTATAGAATCCTGTATGGTC</pcr_primer_p1>
		<pcr_primer_p2>AATGTATCTCCTCTTTCAGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGGTTATAGAATCCTGTATGGTCCTTTTCCGGTAAAAAATAATTTTTAATTCGTCTGACAGAACTTTTTTATAATCAAATAACAACGCAAAAATGCGATTTCGTGCAATTTCGTGAGGTTTTTTTTAATATAAAAAAGTTCTGTCAGACGAATTAAAAATTCATCCATAAAAAATGAAGAGTAAATTATTGCGGTTCTTTTGAGCTACAAAATTCCAAAATATGTCGAAAACTGAAAGAGGAGATACATT</canonical_amplicon>
		<polymorphic_amplicon>TGGTTATAGAATCCTGTATGGTCCTTTTCCGGTAAAAAATAATTTTTAATTCGTCTGACAGAACTTTTTTATAATCAAATAACAACGCAAAAATGCGATTTCGTGCAATTTCGTGAGGTTTTTTTTAATATAAAAAAGTTCTGTCAGACGAATTAAAAATTCATCCATAAAAAATGAAGAGTAAATKATTGCGGTTCTTTTGAGCTACAAAATTCCAAAATATGTCGAAAACTGAAAGAGGAGATACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34812</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>182352</contig_pos>
        <strand></strand>
        <context>AAGTATAATT[G/A]AAACTTGTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GATTGTGAAAAAAAAAACCTAGACAACAATATTATTCAAAAAGTATAATT</left_flank>
        <right_flank>AAACTTGTCATCTTCAAAGCTCTAGCAACTACACTGAACAATAATTTGTA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGCAATGAAAATACTATCCTCGTTATCCTCTAATGGTTCGGACATACAAGTTGGCTGAGCACAGCCCAGCACTGGTGAGCCTAAAGAGGGAAACCCATCATGAAGTAGTGTGTTGAGATAAACAAACCGTCTGACAAAATTTCCAGACTGTACGGCACTCCATTCTCGCCACAATATGAGGTTTCGATTACATAAAGCTGCAGTAGAAGAAGAAAGGATGAAAGGATAAACGCTCCATGGCGCATTCTGAATTTTTCTGTTTTTTAGGAAAGAAAGACGTCAAAAAGTGATACGGAGGGCACAATTGAAATATGATTTTTTATGCAGCATGTTTGGCCAAAAATTCGGGGGGTACAATGATTCGGGGGTACAAGGGGGTACAACTTAACTCCAGGACAAAATTTGAAATCAAACCATGGGTGTTTAAGAAAAAATATAATTTTAAGAAGATTGTGAAAAAAAAAACCTAGACAACAATATTATTCAAAAAGTATAATTGAAACTTGTCATCTTCAAAGCTCTAGCAACTACACTGAACAATAATTTGTATCTATTGGCACAGAAAAGGGTATGGAGGAGAAAATTGAAGAATAAACTAAAAGTGGGCGCGGTCTACAGGGCTAATCTTGATGGCGGCGCTGTGTTGGGAAGAAGCGGGGGAGGCTTAGAGAAACGTGGAAGGACGGATGCATGGGAAGAAAATTAGATCTGGACAAGAAATGATGAAGAAGAAGGACTAGGAAGAAGAAAAAGCATAAGCCTGTGTGGTGGTAGTGGCGGACAGCGGTGGAAGATATCCATTGAGAGGAAGAAGAATGAGTAGAAGGGAGGGGGTGGTGTATACAGGCATTGCGTCTAACAACAAGCTTGCAACTTTCCTGTTTATCACCATTCCTCTCTTCTATCTGTATTCTCTTATCCTTTATATAGCCCTTCTGTTTCCTTTCTGCCAATTTTTACCGACCACCAAGTGAAGGAACAAAGAATTTAGGAGAAAAA</canonical>
            <polymorphic>TAGCAATGAAAATACTATCCTCGTTATCCTCTAATGGTTCGGACATACAAGTTGGCTGAGCACAGCCCAGCACTGGTGAGCCTAAAGAGGGAAACCCATCATGAAGTAGTGTGTTGAGATAAACAAACCGTCTGACAAAATTTCCAGACTGTACGGCACTCCATTCTCGCCACAATATGAGGTTTCGATTACATAAAGCTGCAGTAGAAGAAGAAAGGATGAAAGGATAAACGCTCCATGGCGCATTCTGAATTTTTCTGTTTTTTAGGAAAGAAAGACGTCAAAAAGTGATACGGAGGGCACAATTGAAATATGATTTTTTATGCAGCATGTTTGGCCAAAAATTCGGGGGGTACAATGATTCGGGGGTACAAGGGGGTACAACTTAACTCCAGGACAAAATTTGAAATCAAACCATGGGTGTTTAAGAAAAAATATAATTTTAAGAAGATTGTGAAAAAAAAAACCTAGACAACAATATTATTCAAAAAGTATAATTRAAACTTGTCATCTTCAAAGCTCTAGCAACTACACTGAACAATAATTTGTATCTATTGGCACAGAAAAGGGTATGGAGGAGAAAATTGAAGAATAAACTAAAAGTGGGCGCGGTCTACAGGGCTAATCTTGATGGCGGCGCTGTGTTGGGAAGAAGCGGGGGAGGCTTAGAGAAACGTGGAAGGACGGATGCATGGGAAGAAAATTAGATCTGGACAAGAAATGATGAAGAAGAAGGACTAGGAAGAAGAAAAAGCATAAGCCTGTGTGGTGGTAGTGGCGGACAGCGGTGGAAGATATCCATTGAGAGGAAGAAGAATGAGTAGAAGGGAGGGGGTGGTGTATACAGGCATTGCGTCTAACAACAAGCTTGCAACTTTCCTGTTTATCACCATTCCTCTCTTCTATCTGTATTCTCTTATCCTTTATATAGCCCTTCTGTTTCCTTTCTGCCAATTTTTACCGACCACCAAGTGAAGGAACAAAGAATTTAGGAGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACTTAACTCCAGGACAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CATCAAGATTAGCCCTGTAGAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAACTTAACTCCAGGACAAAATTTGAAATCAAACCATGGGTGTTTAAGAAAAAATATAATTTTAAGAAGATTGTGAAAAAAAAAACCTAGACAACAATATTATTCAAAAAGTATAATTGAAACTTGTCATCTTCAAAGCTCTAGCAACTACACTGAACAATAATTTGTATCTATTGGCACAGAAAAGGGTATGGAGGAGAAAATTGAAGAATAAACTAAAAGTGGGCGCGGTCTACAGGGCTAATCTTGATG</canonical_amplicon>
		<polymorphic_amplicon>CAACTTAACTCCAGGACAAAATTTGAAATCAAACCATGGGTGTTTAAGAAAAAATATAATTTTAAGAAGATTGTGAAAAAAAAAACCTAGACAACAATATTATTCAAAAAGTATAATTRAAACTTGTCATCTTCAAAGCTCTAGCAACTACACTGAACAATAATTTGTATCTATTGGCACAGAAAAGGGTATGGAGGAGAAAATTGAAGAATAAACTAAAAGTGGGCGCGGTCTACAGGGCTAATCTTGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34813</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>182382</contig_pos>
        <strand></strand>
        <context>CTCTAGCAAC[T/A]ACACTGAACA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATTATTCAAAAAGTATAATTGAAACTTGTCATCTTCAAAGCTCTAGCAAC</left_flank>
        <right_flank>ACACTGAACAATAATTTGTATCTATTGGCACAGAAAAGGGTATGGAGGAG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAATGGTTCGGACATACAAGTTGGCTGAGCACAGCCCAGCACTGGTGAGCCTAAAGAGGGAAACCCATCATGAAGTAGTGTGTTGAGATAAACAAACCGTCTGACAAAATTTCCAGACTGTACGGCACTCCATTCTCGCCACAATATGAGGTTTCGATTACATAAAGCTGCAGTAGAAGAAGAAAGGATGAAAGGATAAACGCTCCATGGCGCATTCTGAATTTTTCTGTTTTTTAGGAAAGAAAGACGTCAAAAAGTGATACGGAGGGCACAATTGAAATATGATTTTTTATGCAGCATGTTTGGCCAAAAATTCGGGGGGTACAATGATTCGGGGGTACAAGGGGGTACAACTTAACTCCAGGACAAAATTTGAAATCAAACCATGGGTGTTTAAGAAAAAATATAATTTTAAGAAGATTGTGAAAAAAAAAACCTAGACAACAATATTATTCAAAAAGTATAATTGAAACTTGTCATCTTCAAAGCTCTAGCAACTACACTGAACAATAATTTGTATCTATTGGCACAGAAAAGGGTATGGAGGAGAAAATTGAAGAATAAACTAAAAGTGGGCGCGGTCTACAGGGCTAATCTTGATGGCGGCGCTGTGTTGGGAAGAAGCGGGGGAGGCTTAGAGAAACGTGGAAGGACGGATGCATGGGAAGAAAATTAGATCTGGACAAGAAATGATGAAGAAGAAGGACTAGGAAGAAGAAAAAGCATAAGCCTGTGTGGTGGTAGTGGCGGACAGCGGTGGAAGATATCCATTGAGAGGAAGAAGAATGAGTAGAAGGGAGGGGGTGGTGTATACAGGCATTGCGTCTAACAACAAGCTTGCAACTTTCCTGTTTATCACCATTCCTCTCTTCTATCTGTATTCTCTTATCCTTTATATAGCCCTTCTGTTTCCTTTCTGCCAATTTTTACCGACCACCAAGTGAAGGAACAAAGAATTTAGGAGAAAAAAATTACTGAGAAATAATTGAATACAGTTTT</canonical>
            <polymorphic>CTAATGGTTCGGACATACAAGTTGGCTGAGCACAGCCCAGCACTGGTGAGCCTAAAGAGGGAAACCCATCATGAAGTAGTGTGTTGAGATAAACAAACCGTCTGACAAAATTTCCAGACTGTACGGCACTCCATTCTCGCCACAATATGAGGTTTCGATTACATAAAGCTGCAGTAGAAGAAGAAAGGATGAAAGGATAAACGCTCCATGGCGCATTCTGAATTTTTCTGTTTTTTAGGAAAGAAAGACGTCAAAAAGTGATACGGAGGGCACAATTGAAATATGATTTTTTATGCAGCATGTTTGGCCAAAAATTCGGGGGGTACAATGATTCGGGGGTACAAGGGGGTACAACTTAACTCCAGGACAAAATTTGAAATCAAACCATGGGTGTTTAAGAAAAAATATAATTTTAAGAAGATTGTGAAAAAAAAAACCTAGACAACAATATTATTCAAAAAGTATAATTGAAACTTGTCATCTTCAAAGCTCTAGCAACWACACTGAACAATAATTTGTATCTATTGGCACAGAAAAGGGTATGGAGGAGAAAATTGAAGAATAAACTAAAAGTGGGCGCGGTCTACAGGGCTAATCTTGATGGCGGCGCTGTGTTGGGAAGAAGCGGGGGAGGCTTAGAGAAACGTGGAAGGACGGATGCATGGGAAGAAAATTAGATCTGGACAAGAAATGATGAAGAAGAAGGACTAGGAAGAAGAAAAAGCATAAGCCTGTGTGGTGGTAGTGGCGGACAGCGGTGGAAGATATCCATTGAGAGGAAGAAGAATGAGTAGAAGGGAGGGGGTGGTGTATACAGGCATTGCGTCTAACAACAAGCTTGCAACTTTCCTGTTTATCACCATTCCTCTCTTCTATCTGTATTCTCTTATCCTTTATATAGCCCTTCTGTTTCCTTTCTGCCAATTTTTACCGACCACCAAGTGAAGGAACAAAGAATTTAGGAGAAAAAAATTACTGAGAAATAATTGAATACAGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACTTAACTCCAGGACAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CATCAAGATTAGCCCTGTAGAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAACTTAACTCCAGGACAAAATTTGAAATCAAACCATGGGTGTTTAAGAAAAAATATAATTTTAAGAAGATTGTGAAAAAAAAAACCTAGACAACAATATTATTCAAAAAGTATAATTGAAACTTGTCATCTTCAAAGCTCTAGCAACTACACTGAACAATAATTTGTATCTATTGGCACAGAAAAGGGTATGGAGGAGAAAATTGAAGAATAAACTAAAAGTGGGCGCGGTCTACAGGGCTAATCTTGATG</canonical_amplicon>
		<polymorphic_amplicon>CAACTTAACTCCAGGACAAAATTTGAAATCAAACCATGGGTGTTTAAGAAAAAATATAATTTTAAGAAGATTGTGAAAAAAAAAACCTAGACAACAATATTATTCAAAAAGTATAATTGAAACTTGTCATCTTCAAAGCTCTAGCAACWACACTGAACAATAATTTGTATCTATTGGCACAGAAAAGGGTATGGAGGAGAAAATTGAAGAATAAACTAAAAGTGGGCGCGGTCTACAGGGCTAATCTTGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34814</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>182556</contig_pos>
        <strand></strand>
        <context>GGGAAGAAAA[T/A]TAGATCTGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGCGGGGGAGGCTTAGAGAAACGTGGAAGGACGGATGCATGGGAAGAAAA</left_flank>
        <right_flank>TAGATCTGGACAAGAAATGATGAAGAAGAAGGACTAGGAAGAAGAAAAAG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGAAGAAGAAAGGATGAAAGGATAAACGCTCCATGGCGCATTCTGAATTTTTCTGTTTTTTAGGAAAGAAAGACGTCAAAAAGTGATACGGAGGGCACAATTGAAATATGATTTTTTATGCAGCATGTTTGGCCAAAAATTCGGGGGGTACAATGATTCGGGGGTACAAGGGGGTACAACTTAACTCCAGGACAAAATTTGAAATCAAACCATGGGTGTTTAAGAAAAAATATAATTTTAAGAAGATTGTGAAAAAAAAAACCTAGACAACAATATTATTCAAAAAGTATAATTGAAACTTGTCATCTTCAAAGCTCTAGCAACTACACTGAACAATAATTTGTATCTATTGGCACAGAAAAGGGTATGGAGGAGAAAATTGAAGAATAAACTAAAAGTGGGCGCGGTCTACAGGGCTAATCTTGATGGCGGCGCTGTGTTGGGAAGAAGCGGGGGAGGCTTAGAGAAACGTGGAAGGACGGATGCATGGGAAGAAAATTAGATCTGGACAAGAAATGATGAAGAAGAAGGACTAGGAAGAAGAAAAAGCATAAGCCTGTGTGGTGGTAGTGGCGGACAGCGGTGGAAGATATCCATTGAGAGGAAGAAGAATGAGTAGAAGGGAGGGGGTGGTGTATACAGGCATTGCGTCTAACAACAAGCTTGCAACTTTCCTGTTTATCACCATTCCTCTCTTCTATCTGTATTCTCTTATCCTTTATATAGCCCTTCTGTTTCCTTTCTGCCAATTTTTACCGACCACCAAGTGAAGGAACAAAGAATTTAGGAGAAAAAAATTACTGAGAAATAATTGAATACAGTTTTTTTTTCTAAATATCAAGTTTAGATTCCATAGTGTCAAGATCGCTCCTCGAATGTTTAAAATTGAGCTGTTTTCTTTATGATTTAAAAATAAAATTTATTTCACCATCAAACTTTGGGTACAGCAAACAAAAAGGCTTAAAGCTCTTGATAGTTGTTGGTTTTGCATTAGAATAT</canonical>
            <polymorphic>TAGAAGAAGAAAGGATGAAAGGATAAACGCTCCATGGCGCATTCTGAATTTTTCTGTTTTTTAGGAAAGAAAGACGTCAAAAAGTGATACGGAGGGCACAATTGAAATATGATTTTTTATGCAGCATGTTTGGCCAAAAATTCGGGGGGTACAATGATTCGGGGGTACAAGGGGGTACAACTTAACTCCAGGACAAAATTTGAAATCAAACCATGGGTGTTTAAGAAAAAATATAATTTTAAGAAGATTGTGAAAAAAAAAACCTAGACAACAATATTATTCAAAAAGTATAATTGAAACTTGTCATCTTCAAAGCTCTAGCAACTACACTGAACAATAATTTGTATCTATTGGCACAGAAAAGGGTATGGAGGAGAAAATTGAAGAATAAACTAAAAGTGGGCGCGGTCTACAGGGCTAATCTTGATGGCGGCGCTGTGTTGGGAAGAAGCGGGGGAGGCTTAGAGAAACGTGGAAGGACGGATGCATGGGAAGAAAAWTAGATCTGGACAAGAAATGATGAAGAAGAAGGACTAGGAAGAAGAAAAAGCATAAGCCTGTGTGGTGGTAGTGGCGGACAGCGGTGGAAGATATCCATTGAGAGGAAGAAGAATGAGTAGAAGGGAGGGGGTGGTGTATACAGGCATTGCGTCTAACAACAAGCTTGCAACTTTCCTGTTTATCACCATTCCTCTCTTCTATCTGTATTCTCTTATCCTTTATATAGCCCTTCTGTTTCCTTTCTGCCAATTTTTACCGACCACCAAGTGAAGGAACAAAGAATTTAGGAGAAAAAAATTACTGAGAAATAATTGAATACAGTTTTTTTTTCTAAATATCAAGTTTAGATTCCATAGTGTCAAGATCGCTCCTCGAATGTTTAAAATTGAGCTGTTTTCTTTATGATTTAAAAATAAAATTTATTTCACCATCAAACTTTGGGTACAGCAAACAAAAAGGCTTAAAGCTCTTGATAGTTGTTGGTTTTGCATTAGAATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>251 119 83 74 58 57 53 47 46 40 39 38 33 33 15 14</canonical_bands>
                <polymorphic_bands>370 83 74 58 57 53 47 46 40 39 38 33 33 15 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCATCTTCAAAGCTCTAGCA</pcr_primer_p1>
		<pcr_primer_p2>TTATGCTTTTTCTTCTTCCTAGTC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GTCATCTTCAAAGCTCTAGCAACTACACTGAACAATAATTTGTATCTATTGGCACAGAAAAGGGTATGGAGGAGAAAATTGAAGAATAAACTAAAAGTGGGCGCGGTCTACAGGGCTAATCTTGATGGCGGCGCTGTGTTGGGAAGAAGCGGGGGAGGCTTAGAGAAACGTGGAAGGACGGATGCATGGGAAGAAAATTAGATCTGGACAAGAAATGATGAAGAAGAAGGACTAGGAAGAAGAAAAAGCATAA</canonical_amplicon>
		<polymorphic_amplicon>GTCATCTTCAAAGCTCTAGCAACTACACTGAACAATAATTTGTATCTATTGGCACAGAAAAGGGTATGGAGGAGAAAATTGAAGAATAAACTAAAAGTGGGCGCGGTCTACAGGGCTAATCTTGATGGCGGCGCTGTGTTGGGAAGAAGCGGGGGAGGCTTAGAGAAACGTGGAAGGACGGATGCATGGGAAGAAAAWTAGATCTGGACAAGAAATGATGAAGAAGAAGGACTAGGAAGAAGAAAAAGCATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34815</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>182663</contig_pos>
        <strand></strand>
        <context>ATTGAGAGGA[A/G]GAAGAATGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTGTGTGGTGGTAGTGGCGGACAGCGGTGGAAGATATCCATTGAGAGGA</left_flank>
        <right_flank>GAAGAATGAGTAGAAGGGAGGGGGTGGTGTATACAGGCATTGCGTCTAAC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGATTTTTTATGCAGCATGTTTGGCCAAAAATTCGGGGGGTACAATGATTCGGGGGTACAAGGGGGTACAACTTAACTCCAGGACAAAATTTGAAATCAAACCATGGGTGTTTAAGAAAAAATATAATTTTAAGAAGATTGTGAAAAAAAAAACCTAGACAACAATATTATTCAAAAAGTATAATTGAAACTTGTCATCTTCAAAGCTCTAGCAACTACACTGAACAATAATTTGTATCTATTGGCACAGAAAAGGGTATGGAGGAGAAAATTGAAGAATAAACTAAAAGTGGGCGCGGTCTACAGGGCTAATCTTGATGGCGGCGCTGTGTTGGGAAGAAGCGGGGGAGGCTTAGAGAAACGTGGAAGGACGGATGCATGGGAAGAAAATTAGATCTGGACAAGAAATGATGAAGAAGAAGGACTAGGAAGAAGAAAAAGCATAAGCCTGTGTGGTGGTAGTGGCGGACAGCGGTGGAAGATATCCATTGAGAGGAAGAAGAATGAGTAGAAGGGAGGGGGTGGTGTATACAGGCATTGCGTCTAACAACAAGCTTGCAACTTTCCTGTTTATCACCATTCCTCTCTTCTATCTGTATTCTCTTATCCTTTATATAGCCCTTCTGTTTCCTTTCTGCCAATTTTTACCGACCACCAAGTGAAGGAACAAAGAATTTAGGAGAAAAAAATTACTGAGAAATAATTGAATACAGTTTTTTTTTCTAAATATCAAGTTTAGATTCCATAGTGTCAAGATCGCTCCTCGAATGTTTAAAATTGAGCTGTTTTCTTTATGATTTAAAAATAAAATTTATTTCACCATCAAACTTTGGGTACAGCAAACAAAAAGGCTTAAAGCTCTTGATAGTTGTTGGTTTTGCATTAGAATATATTAAAAAAAGAAAACGTGTGAAAATCAAGTGAGACAAAAAAGATCTGAGGAATATGTTTTGAGATGGTTAAATGAAAAATAACAACAAAAATCAGCTCTTCACTTA</canonical>
            <polymorphic>TATGATTTTTTATGCAGCATGTTTGGCCAAAAATTCGGGGGGTACAATGATTCGGGGGTACAAGGGGGTACAACTTAACTCCAGGACAAAATTTGAAATCAAACCATGGGTGTTTAAGAAAAAATATAATTTTAAGAAGATTGTGAAAAAAAAAACCTAGACAACAATATTATTCAAAAAGTATAATTGAAACTTGTCATCTTCAAAGCTCTAGCAACTACACTGAACAATAATTTGTATCTATTGGCACAGAAAAGGGTATGGAGGAGAAAATTGAAGAATAAACTAAAAGTGGGCGCGGTCTACAGGGCTAATCTTGATGGCGGCGCTGTGTTGGGAAGAAGCGGGGGAGGCTTAGAGAAACGTGGAAGGACGGATGCATGGGAAGAAAATTAGATCTGGACAAGAAATGATGAAGAAGAAGGACTAGGAAGAAGAAAAAGCATAAGCCTGTGTGGTGGTAGTGGCGGACAGCGGTGGAAGATATCCATTGAGAGGARGAAGAATGAGTAGAAGGGAGGGGGTGGTGTATACAGGCATTGCGTCTAACAACAAGCTTGCAACTTTCCTGTTTATCACCATTCCTCTCTTCTATCTGTATTCTCTTATCCTTTATATAGCCCTTCTGTTTCCTTTCTGCCAATTTTTACCGACCACCAAGTGAAGGAACAAAGAATTTAGGAGAAAAAAATTACTGAGAAATAATTGAATACAGTTTTTTTTTCTAAATATCAAGTTTAGATTCCATAGTGTCAAGATCGCTCCTCGAATGTTTAAAATTGAGCTGTTTTCTTTATGATTTAAAAATAAAATTTATTTCACCATCAAACTTTGGGTACAGCAAACAAAAAGGCTTAAAGCTCTTGATAGTTGTTGGTTTTGCATTAGAATATATTAAAAAAAGAAAACGTGTGAAAATCAAGTGAGACAAAAAAGATCTGAGGAATATGTTTTGAGATGGTTAAATGAAAAATAACAACAAAAATCAGCTCTTCACTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTAGAGAAACGTGGAAGGAC</pcr_primer_p1>
		<pcr_primer_p2>AGATAGAAGAGAGGAATGGTGAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CTTAGAGAAACGTGGAAGGACGGATGCATGGGAAGAAAATTAGATCTGGACAAGAAATGATGAAGAAGAAGGACTAGGAAGAAGAAAAAGCATAAGCCTGTGTGGTGGTAGTGGCGGACAGCGGTGGAAGATATCCATTGAGAGGAAGAAGAATGAGTAGAAGGGAGGGGGTGGTGTATACAGGCATTGCGTCTAACAACAAGCTTGCAACTTTCCTGTTTATCACCATTCCTCTCTTCTATCT</canonical_amplicon>
		<polymorphic_amplicon>CTTAGAGAAACGTGGAAGGACGGATGCATGGGAAGAAAATTAGATCTGGACAAGAAATGATGAAGAAGAAGGACTAGGAAGAAGAAAAAGCATAAGCCTGTGTGGTGGTAGTGGCGGACAGCGGTGGAAGATATCCATTGAGAGGARGAAGAATGAGTAGAAGGGAGGGGGTGGTGTATACAGGCATTGCGTCTAACAACAAGCTTGCAACTTTCCTGTTTATCACCATTCCTCTCTTCTATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34816</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>182824</contig_pos>
        <strand></strand>
        <context>CGACCACCAA[G/A]KGAAGRAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTTTATATAGCCCTTCTGTTTCCTTTCTGCCAATTTTTACCGACCACCAA</left_flank>
        <right_flank>TGAAGGAACAAAGAATTTAGGAGAAAAAAATTACTGAGAAATAATTGAAT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACAATATTATTCAAAAAGTATAATTGAAACTTGTCATCTTCAAAGCTCTAGCAACTACACTGAACAATAATTTGTATCTATTGGCACAGAAAAGGGTATGGAGGAGAAAATTGAAGAATAAACTAAAAGTGGGCGCGGTCTACAGGGCTAATCTTGATGGCGGCGCTGTGTTGGGAAGAAGCGGGGGAGGCTTAGAGAAACGTGGAAGGACGGATGCATGGGAAGAAAATTAGATCTGGACAAGAAATGATGAAGAAGAAGGACTAGGAAGAAGAAAAAGCATAAGCCTGTGTGGTGGTAGTGGCGGACAGCGGTGGAAGATATCCATTGAGAGGAAGAAGAATGAGTAGAAGGGAGGGGGTGGTGTATACAGGCATTGCGTCTAACAACAAGCTTGCAACTTTCCTGTTTATCACCATTCCTCTCTTCTATCTGTATTCTCTTATCCTTTATATAGCCCTTCTGTTTCCTTTCTGCCAATTTTTACCGACCACCAAGTGAAGGAACAAAGAATTTAGGAGAAAAAAATTACTGAGAAATAATTGAATACAGTTTTTTTTTCTAAATATCAAGTTTAGATTCCATAGTGTCAAGATCGCTCCTCGAATGTTTAAAATTGAGCTGTTTTCTTTATGATTTAAAAATAAAATTTATTTCACCATCAAACTTTGGGTACAGCAAACAAAAAGGCTTAAAGCTCTTGATAGTTGTTGGTTTTGCATTAGAATATATTAAAAAAAGAAAACGTGTGAAAATCAAGTGAGACAAAAAAGATCTGAGGAATATGTTTTGAGATGGTTAAATGAAAAATAACAACAAAAATCAGCTCTTCACTTACTTCTGAAAAAAAATAATTTTGGACTTTAGGGAAAAAAATTATCATGAAAAACAGTCGGGTGTTCAAGAATAGGAGTAGAAGTGTGAAGAAAAAACACGTTCAAGGTAAACTGTCCAAAAGTTTCTGAACTACTGATTGAGCTTCTGCATCATCCAAATTC</canonical>
            <polymorphic>CAACAATATTATTCAAAAAGTATAATTGAAACTTGTCATCTTCAAAGCTCTAGCAACTACACTGAACAATAATTTGTATCTATTGGCACAGAAAAGGGTATGGAGGAGAAAATTGAAGAATAAACTAAAAGTGGGCGCGGTCTACAGGGCTAATCTTGATGGCGGCGCTGTGTTGGGAAGAAGCGGGGGAGGCTTAGAGAAACGTGGAAGGACGGATGCATGGGAAGAAAATTAGATCTGGACAAGAAATGATGAAGAAGAAGGACTAGGAAGAAGAAAAAGCATAAGCCTGTGTGGTGGTAGTGGCGGACAGCGGTGGAAGATATCCATTGAGAGGAAGAAGAATGAGTAGAAGGGAGGGGGTGGTGTATACAGGCATTGCGTCTAACAACAAGCTTGCAACTTTCCTGTTTATCACCATTCCTCTCTTCTATCTGTATTCTCTTATCCTTTATATAGCCCTTCTGTTTCCTTTCTGCCAATTTTTACCGACCACCAARTGAAGGAACAAAGAATTTAGGAGAAAAAAATTACTGAGAAATAATTGAATACAGTTTTTTTTTCTAAATATCAAGTTTAGATTCCATAGTGTCAAGATCGCTCCTCGAATGTTTAAAATTGAGCTGTTTTCTTTATGATTTAAAAATAAAATTTATTTCACCATCAAACTTTGGGTACAGCAAACAAAAAGGCTTAAAGCTCTTGATAGTTGTTGGTTTTGCATTAGAATATATTAAAAAAAGAAAACGTGTGAAAATCAAGTGAGACAAAAAAGATCTGAGGAATATGTTTTGAGATGGTTAAATGAAAAATAACAACAAAAATCAGCTCTTCACTTACTTCTGAAAAAAAATAATTTTGGACTTTAGGGAAAAAAATTATCATGAAAAACAGTCGGGTGTTCAAGAATAGGAGTAGAAGTGTGAAGAAAAAACACGTTCAAGGTAAACTGTCCAAAAGTTTCTGAACTACTGATTGAGCTTCTGCATCATCCAAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACNNNGTG</site>
                <isoschizomers>
                    <enzyme>AdeI</enzyme>
                    <enzyme>DraIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>91 89 88 78 71 69 66 64 61 49 47 45 39 34 27 22 13 11 11 7 6 3 3 2 2 2</canonical_bands>
                <polymorphic_bands>96 91 88 78 71 69 66 64 61 49 47 45 39 34 27 22 13 11 11 6 3 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTTTATATAGCCCTTCTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TAAGCCTTTTTGTTTGCTGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCTTTATATAGCCCTTCTGTTTCCTTTCTGCCAATTTTTACCGACCACCAAGTGAAGGAACAAAGAATTTAGGAGAAAAAAATTACTGAGAAATAATTGAATACAGTTTTTTTTTCTAAATATCAAGTTTAGATTCCATAGTGTCAAGATCGCTCCTCGAATGTTTAAAATTGAGCTGTTTTCTTTATGATTTAAAAATAAAATTTATTTCACCATCAAACTTTGGGTACAGCAAACAAAAAGGCTTA</canonical_amplicon>
		<polymorphic_amplicon>TCCTTTATATAGCCCTTCTGTTTCCTTTCTGCCAATTTTTACCGACCACCAARTGAAGGAACAAAGAATTTAGGAGAAAAAAATTACTGAGAAATAATTGAATACAGTTTTTTTTTCTAAATATCAAGTTTAGATTCCATAGTGTCAAGATCGCTCCTCGAATGTTTAAAATTGAGCTGTTTTCTTTATGATTTAAAAATAAAATTTATTTCACCATCAAACTTTGGGTACAGCAAACAAAAAGGCTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34817</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>182825</contig_pos>
        <strand></strand>
        <context>GACCACCAAR[T/G]GAAGRAACAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTTATATAGCCCTTCTGTTTCCTTTCTGCCAATTTTTACCGACCACCAAG</left_flank>
        <right_flank>GAAGGAACAAAGAATTTAGGAGAAAAAAATTACTGAGAAATAATTGAATA</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAATATTATTCAAAAAGTATAATTGAAACTTGTCATCTTCAAAGCTCTAGCAACTACACTGAACAATAATTTGTATCTATTGGCACAGAAAAGGGTATGGAGGAGAAAATTGAAGAATAAACTAAAAGTGGGCGCGGTCTACAGGGCTAATCTTGATGGCGGCGCTGTGTTGGGAAGAAGCGGGGGAGGCTTAGAGAAACGTGGAAGGACGGATGCATGGGAAGAAAATTAGATCTGGACAAGAAATGATGAAGAAGAAGGACTAGGAAGAAGAAAAAGCATAAGCCTGTGTGGTGGTAGTGGCGGACAGCGGTGGAAGATATCCATTGAGAGGAAGAAGAATGAGTAGAAGGGAGGGGGTGGTGTATACAGGCATTGCGTCTAACAACAAGCTTGCAACTTTCCTGTTTATCACCATTCCTCTCTTCTATCTGTATTCTCTTATCCTTTATATAGCCCTTCTGTTTCCTTTCTGCCAATTTTTACCGACCACCAAGTGAAGGAACAAAGAATTTAGGAGAAAAAAATTACTGAGAAATAATTGAATACAGTTTTTTTTTCTAAATATCAAGTTTAGATTCCATAGTGTCAAGATCGCTCCTCGAATGTTTAAAATTGAGCTGTTTTCTTTATGATTTAAAAATAAAATTTATTTCACCATCAAACTTTGGGTACAGCAAACAAAAAGGCTTAAAGCTCTTGATAGTTGTTGGTTTTGCATTAGAATATATTAAAAAAAGAAAACGTGTGAAAATCAAGTGAGACAAAAAAGATCTGAGGAATATGTTTTGAGATGGTTAAATGAAAAATAACAACAAAAATCAGCTCTTCACTTACTTCTGAAAAAAAATAATTTTGGACTTTAGGGAAAAAAATTATCATGAAAAACAGTCGGGTGTTCAAGAATAGGAGTAGAAGTGTGAAGAAAAAACACGTTCAAGGTAAACTGTCCAAAAGTTTCTGAACTACTGATTGAGCTTCTGCATCATCCAAATTCT</canonical>
            <polymorphic>AACAATATTATTCAAAAAGTATAATTGAAACTTGTCATCTTCAAAGCTCTAGCAACTACACTGAACAATAATTTGTATCTATTGGCACAGAAAAGGGTATGGAGGAGAAAATTGAAGAATAAACTAAAAGTGGGCGCGGTCTACAGGGCTAATCTTGATGGCGGCGCTGTGTTGGGAAGAAGCGGGGGAGGCTTAGAGAAACGTGGAAGGACGGATGCATGGGAAGAAAATTAGATCTGGACAAGAAATGATGAAGAAGAAGGACTAGGAAGAAGAAAAAGCATAAGCCTGTGTGGTGGTAGTGGCGGACAGCGGTGGAAGATATCCATTGAGAGGAAGAAGAATGAGTAGAAGGGAGGGGGTGGTGTATACAGGCATTGCGTCTAACAACAAGCTTGCAACTTTCCTGTTTATCACCATTCCTCTCTTCTATCTGTATTCTCTTATCCTTTATATAGCCCTTCTGTTTCCTTTCTGCCAATTTTTACCGACCACCAAGKGAAGGAACAAAGAATTTAGGAGAAAAAAATTACTGAGAAATAATTGAATACAGTTTTTTTTTCTAAATATCAAGTTTAGATTCCATAGTGTCAAGATCGCTCCTCGAATGTTTAAAATTGAGCTGTTTTCTTTATGATTTAAAAATAAAATTTATTTCACCATCAAACTTTGGGTACAGCAAACAAAAAGGCTTAAAGCTCTTGATAGTTGTTGGTTTTGCATTAGAATATATTAAAAAAAGAAAACGTGTGAAAATCAAGTGAGACAAAAAAGATCTGAGGAATATGTTTTGAGATGGTTAAATGAAAAATAACAACAAAAATCAGCTCTTCACTTACTTCTGAAAAAAAATAATTTTGGACTTTAGGGAAAAAAATTATCATGAAAAACAGTCGGGTGTTCAAGAATAGGAGTAGAAGTGTGAAGAAAAAACACGTTCAAGGTAAACTGTCCAAAAGTTTCTGAACTACTGATTGAGCTTCTGCATCATCCAAATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACNNNGTG</site>
                <isoschizomers>
                    <enzyme>AdeI</enzyme>
                    <enzyme>DraIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>91 89 88 78 71 69 66 65 60 49 47 45 39 34 27 22 13 11 11 7 6 3 3 2 2 2</canonical_bands>
                <polymorphic_bands>96 91 88 78 71 69 66 65 60 49 47 45 39 34 27 22 13 11 11 6 3 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTTTATATAGCCCTTCTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TAAGCCTTTTTGTTTGCTGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCTTTATATAGCCCTTCTGTTTCCTTTCTGCCAATTTTTACCGACCACCAAGTGAAGGAACAAAGAATTTAGGAGAAAAAAATTACTGAGAAATAATTGAATACAGTTTTTTTTTCTAAATATCAAGTTTAGATTCCATAGTGTCAAGATCGCTCCTCGAATGTTTAAAATTGAGCTGTTTTCTTTATGATTTAAAAATAAAATTTATTTCACCATCAAACTTTGGGTACAGCAAACAAAAAGGCTTA</canonical_amplicon>
		<polymorphic_amplicon>TCCTTTATATAGCCCTTCTGTTTCCTTTCTGCCAATTTTTACCGACCACCAAGKGAAGGAACAAAGAATTTAGGAGAAAAAAATTACTGAGAAATAATTGAATACAGTTTTTTTTTCTAAATATCAAGTTTAGATTCCATAGTGTCAAGATCGCTCCTCGAATGTTTAAAATTGAGCTGTTTTCTTTATGATTTAAAAATAAAATTTATTTCACCATCAAACTTTGGGTACAGCAAACAAAAAGGCTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34818</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>182830</contig_pos>
        <strand></strand>
        <context>CCAARKGAAG[G/A]AACAAAGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATAGCCCTTCTGTTTCCTTTCTGCCAATTTTTACCGACCACCAAGTGAAG</left_flank>
        <right_flank>AACAAAGAATTTAGGAGAAAAAAATTACTGAGAAATAATTGAATACAGTT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTATTCAAAAAGTATAATTGAAACTTGTCATCTTCAAAGCTCTAGCAACTACACTGAACAATAATTTGTATCTATTGGCACAGAAAAGGGTATGGAGGAGAAAATTGAAGAATAAACTAAAAGTGGGCGCGGTCTACAGGGCTAATCTTGATGGCGGCGCTGTGTTGGGAAGAAGCGGGGGAGGCTTAGAGAAACGTGGAAGGACGGATGCATGGGAAGAAAATTAGATCTGGACAAGAAATGATGAAGAAGAAGGACTAGGAAGAAGAAAAAGCATAAGCCTGTGTGGTGGTAGTGGCGGACAGCGGTGGAAGATATCCATTGAGAGGAAGAAGAATGAGTAGAAGGGAGGGGGTGGTGTATACAGGCATTGCGTCTAACAACAAGCTTGCAACTTTCCTGTTTATCACCATTCCTCTCTTCTATCTGTATTCTCTTATCCTTTATATAGCCCTTCTGTTTCCTTTCTGCCAATTTTTACCGACCACCAAGTGAAGGAACAAAGAATTTAGGAGAAAAAAATTACTGAGAAATAATTGAATACAGTTTTTTTTTCTAAATATCAAGTTTAGATTCCATAGTGTCAAGATCGCTCCTCGAATGTTTAAAATTGAGCTGTTTTCTTTATGATTTAAAAATAAAATTTATTTCACCATCAAACTTTGGGTACAGCAAACAAAAAGGCTTAAAGCTCTTGATAGTTGTTGGTTTTGCATTAGAATATATTAAAAAAAGAAAACGTGTGAAAATCAAGTGAGACAAAAAAGATCTGAGGAATATGTTTTGAGATGGTTAAATGAAAAATAACAACAAAAATCAGCTCTTCACTTACTTCTGAAAAAAAATAATTTTGGACTTTAGGGAAAAAAATTATCATGAAAAACAGTCGGGTGTTCAAGAATAGGAGTAGAAGTGTGAAGAAAAAACACGTTCAAGGTAAACTGTCCAAAAGTTTCTGAACTACTGATTGAGCTTCTGCATCATCCAAATTCTGAGCG</canonical>
            <polymorphic>TATTATTCAAAAAGTATAATTGAAACTTGTCATCTTCAAAGCTCTAGCAACTACACTGAACAATAATTTGTATCTATTGGCACAGAAAAGGGTATGGAGGAGAAAATTGAAGAATAAACTAAAAGTGGGCGCGGTCTACAGGGCTAATCTTGATGGCGGCGCTGTGTTGGGAAGAAGCGGGGGAGGCTTAGAGAAACGTGGAAGGACGGATGCATGGGAAGAAAATTAGATCTGGACAAGAAATGATGAAGAAGAAGGACTAGGAAGAAGAAAAAGCATAAGCCTGTGTGGTGGTAGTGGCGGACAGCGGTGGAAGATATCCATTGAGAGGAAGAAGAATGAGTAGAAGGGAGGGGGTGGTGTATACAGGCATTGCGTCTAACAACAAGCTTGCAACTTTCCTGTTTATCACCATTCCTCTCTTCTATCTGTATTCTCTTATCCTTTATATAGCCCTTCTGTTTCCTTTCTGCCAATTTTTACCGACCACCAAGTGAAGRAACAAAGAATTTAGGAGAAAAAAATTACTGAGAAATAATTGAATACAGTTTTTTTTTCTAAATATCAAGTTTAGATTCCATAGTGTCAAGATCGCTCCTCGAATGTTTAAAATTGAGCTGTTTTCTTTATGATTTAAAAATAAAATTTATTTCACCATCAAACTTTGGGTACAGCAAACAAAAAGGCTTAAAGCTCTTGATAGTTGTTGGTTTTGCATTAGAATATATTAAAAAAAGAAAACGTGTGAAAATCAAGTGAGACAAAAAAGATCTGAGGAATATGTTTTGAGATGGTTAAATGAAAAATAACAACAAAAATCAGCTCTTCACTTACTTCTGAAAAAAAATAATTTTGGACTTTAGGGAAAAAAATTATCATGAAAAACAGTCGGGTGTTCAAGAATAGGAGTAGAAGTGTGAAGAAAAAACACGTTCAAGGTAAACTGTCCAAAAGTTTCTGAACTACTGATTGAGCTTCTGCATCATCCAAATTCTGAGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>504 327 169</canonical_bands>
                <polymorphic_bands>673 327</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTTTATATAGCCCTTCTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TAAGCCTTTTTGTTTGCTGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCTTTATATAGCCCTTCTGTTTCCTTTCTGCCAATTTTTACCGACCACCAAGTGAAGGAACAAAGAATTTAGGAGAAAAAAATTACTGAGAAATAATTGAATACAGTTTTTTTTTCTAAATATCAAGTTTAGATTCCATAGTGTCAAGATCGCTCCTCGAATGTTTAAAATTGAGCTGTTTTCTTTATGATTTAAAAATAAAATTTATTTCACCATCAAACTTTGGGTACAGCAAACAAAAAGGCTTA</canonical_amplicon>
		<polymorphic_amplicon>TCCTTTATATAGCCCTTCTGTTTCCTTTCTGCCAATTTTTACCGACCACCAAGTGAAGRAACAAAGAATTTAGGAGAAAAAAATTACTGAGAAATAATTGAATACAGTTTTTTTTTCTAAATATCAAGTTTAGATTCCATAGTGTCAAGATCGCTCCTCGAATGTTTAAAATTGAGCTGTTTTCTTTATGATTTAAAAATAAAATTTATTTCACCATCAAACTTTGGGTACAGCAAACAAAAAGGCTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34819</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>185970</contig_pos>
        <strand>+</strand>
        <context>AACAGCTGAT[G/T]TTGACAATAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTTTTTAAGGAAAATTTTTAAATGTCAAAATGGTCTCAAAACAGCTGAT</left_flank>
        <right_flank>TTGACAATATACACAACTATTGAACCCTCTATTCATGTTTCAAAAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTACGACTAGTGAACTAGGAGTTTCAGCTGCCGTAGATGAGACAGTAGTTACAGTGGAATGACTTTTTTCTGTGGATCCGGAAGAAACTACTGATGTTGTGAGATGAGAGAGGGTTGGGGTTGATGTAGAATGAGTGGAACCTGAATATTGTACTGAACTTAATATTTCAGATAATTTTATTAAACTAGGGGACGAAACCGAATGTGTTTAAAAAAAATGAACTACAACGCGCGTCATAATTATAGGCCCCCCCCCCTCGAAATGAGTAAACTGAAAAAACCAAAAATGCTAACAGAAATCTGTAAACGCAGTTTTATTCAGCTTGTAAAAAAACCTACGTGTATTAATTTTCAGCTCAATTGAGTCATTTTTAAGCTCAGAGGGCTCAAAAGTCACTTCTTAGGCCGCGTCATGATTATAAGACCCCCTGGGAAAGGAAAAATCTGAAGTTTTTTAAGGAAAATTTTTAAATGTCAAAATGGTCTCAAAACAGCTGATTTTGACAATATACACAACTATTGAACCCTCTATTCATGTTTCAAAAAAAAATTGCTTTCAGACATTTTCGTCATTTTCAGATTTTTTGGAATAAATCGTGAATAACTTTGCTCCTACTTAAGCTTATGAGCTGAAATTTGTGGGAAAAATTCTAAATGTAAAATGAAGCAAGAATACGAGAAAAATGAAAAAAAAAATTCTTAATGAGATTTCGACCAGAATATTCGCAGAGAAAGTTATTTTCAAAAGTTTGAGAGTTTCATTAATTGCTAATTTTTTGTTGGGATATAGTTTCTGATTTTGAGAGACCTAGAATGATCCGAAATTCCAAAAATTGAATGCTCAGAAACTTTAAAGTTGCTGCAGTTCCACTCCACACATCCAACAGCATATTGTTTTAAAACGTTTTTCTAACAACTAGTTGTACTAGAAGTGATAGTTTTGACAGTGGATAAAAAATCCGATCTTAAAGAATGGATTAGATAATAAATGATGAAAAAA</canonical>
            <polymorphic>TTACGACTAGTGAACTAGGAGTTTCAGCTGCCGTAGATGAGACAGTAGTTACAGTGGAATGACTTTTTTCTGTGGATCCGGAAGAAACTACTGATGTTGTGAGATGAGAGAGGGTTGGGGTTGATGTAGAATGAGTGGAACCTGAATATTGTACTGAACTTAATATTTCAGATAATTTTATTAAACTAGGGGACGAAACCGAATGTGTTTAAAAAAAATGAACTACAACGCGCGTCATAATTATAGGCCCCCCCCCCTCGAAATGAGTAAACTGAAAAAACCAAAAATGCTAACAGAAATCTGTAAACGCAGTTTTATTCAGCTTGTAAAAAAACCTACGTGTATTAATTTTCAGCTCAATTGAGTCATTTTTAAGCTCAGAGGGCTCAAAAGTCACTTCTTAGGCCGCGTCATGATTATAAGACCCCCTGGGAAAGGAAAAATCTGAAGTTTTTTAAGGAAAATTTTTAAATGTCAAAATGGTCTCAAAACAGCTGATKTTGACAATATACACAACTATTGAACCCTCTATTCATGTTTCAAAAAAAAATTGCTTTCAGACATTTTCGTCATTTTCAGATTTTTTGGAATAAATCGTGAATAACTTTGCTCCTACTTAAGCTTATGAGCTGAAATTTGTGGGAAAAATTCTAAATGTAAAATGAAGCAAGAATACGAGAAAAATGAAAAAAAAAATTCTTAATGAGATTTCGACCAGAATATTCGCAGAGAAAGTTATTTTCAAAAGTTTGAGAGTTTCATTAATTGCTAATTTTTTGTTGGGATATAGTTTCTGATTTTGAGAGACCTAGAATGATCCGAAATTCCAAAAATTGAATGCTCAGAAACTTTAAAGTTGCTGCAGTTCCACTCCACACATCCAACAGCATATTGTTTTAAAACGTTTTTCTAACAACTAGTTGTACTAGAAGTGATAGTTTTGACAGTGGATAAAAAATCCGATCTTAAAGAATGGATTAGATAATAAATGATGAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTCGAAATGAGTAAACTGAA</pcr_primer_p1>
		<pcr_primer_p2>AAATGACGAAAATGTCTGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>CCTCGAAATGAGTAAACTGAAAAAACCAAAAATGCTAACAGAAATCTGTAAACGCAGTTTTATTCAGCTTGTAAAAAAACCTACGTGTATTAATTTTCAGCTCAATTGAGTCATTTTTAAGCTCAGAGGGCTCAAAAGTCACTTCTTAGGCCGCGTCATGATTATAAGACCCCCTGGGAAAGGAAAAATCTGAAGTTTTTTAAGGAAAATTTTTAAATGTCAAAATGGTCTCAAAACAGCTGATTTTGACAATATACACAACTATTGAACCCTCTATTCATGTTTCAAAAAAAAATTGCTTTCAGACATTTTCGTCATTT</canonical_amplicon>
		<polymorphic_amplicon>CCTCGAAATGAGTAAACTGAAAAAACCAAAAATGCTAACAGAAATCTGTAAACGCAGTTTTATTCAGCTTGTAAAAAAACCTACGTGTATTAATTTTCAGCTCAATTGAGTCATTTTTAAGCTCAGAGGGCTCAAAAGTCACTTCTTAGGCCGCGTCATGATTATAAGACCCCCTGGGAAAGGAAAAATCTGAAGTTTTTTAAGGAAAATTTTTAAATGTCAAAATGGTCTCAAAACAGCTGATKTTGACAATATACACAACTATTGAACCCTCTATTCATGTTTCAAAAAAAAATTGCTTTCAGACATTTTCGTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34820</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>185987</contig_pos>
        <strand>+</strand>
        <context>ATATACACAA[C/T]TATTGAACCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTAAATGTCAAAATGGTCTCAAAACAGCTGATTTTGACAATATACACAA</left_flank>
        <right_flank>TATTGAACCCTCTATTCATGTTTCAAAAAAAAATTGCTTTCAGACATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGTTTCAGCTGCCGTAGATGAGACAGTAGTTACAGTGGAATGACTTTTTTCTGTGGATCCGGAAGAAACTACTGATGTTGTGAGATGAGAGAGGGTTGGGGTTGATGTAGAATGAGTGGAACCTGAATATTGTACTGAACTTAATATTTCAGATAATTTTATTAAACTAGGGGACGAAACCGAATGTGTTTAAAAAAAATGAACTACAACGCGCGTCATAATTATAGGCCCCCCCCCCTCGAAATGAGTAAACTGAAAAAACCAAAAATGCTAACAGAAATCTGTAAACGCAGTTTTATTCAGCTTGTAAAAAAACCTACGTGTATTAATTTTCAGCTCAATTGAGTCATTTTTAAGCTCAGAGGGCTCAAAAGTCACTTCTTAGGCCGCGTCATGATTATAAGACCCCCTGGGAAAGGAAAAATCTGAAGTTTTTTAAGGAAAATTTTTAAATGTCAAAATGGTCTCAAAACAGCTGATTTTGACAATATACACAACTATTGAACCCTCTATTCATGTTTCAAAAAAAAATTGCTTTCAGACATTTTCGTCATTTTCAGATTTTTTGGAATAAATCGTGAATAACTTTGCTCCTACTTAAGCTTATGAGCTGAAATTTGTGGGAAAAATTCTAAATGTAAAATGAAGCAAGAATACGAGAAAAATGAAAAAAAAAATTCTTAATGAGATTTCGACCAGAATATTCGCAGAGAAAGTTATTTTCAAAAGTTTGAGAGTTTCATTAATTGCTAATTTTTTGTTGGGATATAGTTTCTGATTTTGAGAGACCTAGAATGATCCGAAATTCCAAAAATTGAATGCTCAGAAACTTTAAAGTTGCTGCAGTTCCACTCCACACATCCAACAGCATATTGTTTTAAAACGTTTTTCTAACAACTAGTTGTACTAGAAGTGATAGTTTTGACAGTGGATAAAAAATCCGATCTTAAAGAATGGATTAGATAATAAATGATGAAAAAATGTTGTGTTGTTTTCGA</canonical>
            <polymorphic>GGAGTTTCAGCTGCCGTAGATGAGACAGTAGTTACAGTGGAATGACTTTTTTCTGTGGATCCGGAAGAAACTACTGATGTTGTGAGATGAGAGAGGGTTGGGGTTGATGTAGAATGAGTGGAACCTGAATATTGTACTGAACTTAATATTTCAGATAATTTTATTAAACTAGGGGACGAAACCGAATGTGTTTAAAAAAAATGAACTACAACGCGCGTCATAATTATAGGCCCCCCCCCCTCGAAATGAGTAAACTGAAAAAACCAAAAATGCTAACAGAAATCTGTAAACGCAGTTTTATTCAGCTTGTAAAAAAACCTACGTGTATTAATTTTCAGCTCAATTGAGTCATTTTTAAGCTCAGAGGGCTCAAAAGTCACTTCTTAGGCCGCGTCATGATTATAAGACCCCCTGGGAAAGGAAAAATCTGAAGTTTTTTAAGGAAAATTTTTAAATGTCAAAATGGTCTCAAAACAGCTGATTTTGACAATATACACAAYTATTGAACCCTCTATTCATGTTTCAAAAAAAAATTGCTTTCAGACATTTTCGTCATTTTCAGATTTTTTGGAATAAATCGTGAATAACTTTGCTCCTACTTAAGCTTATGAGCTGAAATTTGTGGGAAAAATTCTAAATGTAAAATGAAGCAAGAATACGAGAAAAATGAAAAAAAAAATTCTTAATGAGATTTCGACCAGAATATTCGCAGAGAAAGTTATTTTCAAAAGTTTGAGAGTTTCATTAATTGCTAATTTTTTGTTGGGATATAGTTTCTGATTTTGAGAGACCTAGAATGATCCGAAATTCCAAAAATTGAATGCTCAGAAACTTTAAAGTTGCTGCAGTTCCACTCCACACATCCAACAGCATATTGTTTTAAAACGTTTTTCTAACAACTAGTTGTACTAGAAGTGATAGTTTTGACAGTGGATAAAAAATCCGATCTTAAAGAATGGATTAGATAATAAATGATGAAAAAATGTTGTGTTGTTTTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTCGAAATGAGTAAACTGAA</pcr_primer_p1>
		<pcr_primer_p2>AAATGACGAAAATGTCTGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>CCTCGAAATGAGTAAACTGAAAAAACCAAAAATGCTAACAGAAATCTGTAAACGCAGTTTTATTCAGCTTGTAAAAAAACCTACGTGTATTAATTTTCAGCTCAATTGAGTCATTTTTAAGCTCAGAGGGCTCAAAAGTCACTTCTTAGGCCGCGTCATGATTATAAGACCCCCTGGGAAAGGAAAAATCTGAAGTTTTTTAAGGAAAATTTTTAAATGTCAAAATGGTCTCAAAACAGCTGATTTTGACAATATACACAACTATTGAACCCTCTATTCATGTTTCAAAAAAAAATTGCTTTCAGACATTTTCGTCATTT</canonical_amplicon>
		<polymorphic_amplicon>CCTCGAAATGAGTAAACTGAAAAAACCAAAAATGCTAACAGAAATCTGTAAACGCAGTTTTATTCAGCTTGTAAAAAAACCTACGTGTATTAATTTTCAGCTCAATTGAGTCATTTTTAAGCTCAGAGGGCTCAAAAGTCACTTCTTAGGCCGCGTCATGATTATAAGACCCCCTGGGAAAGGAAAAATCTGAAGTTTTTTAAGGAAAATTTTTAAATGTCAAAATGGTCTCAAAACAGCTGATTTTGACAATATACACAAYTATTGAACCCTCTATTCATGTTTCAAAAAAAAATTGCTTTCAGACATTTTCGTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34821</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>186012</contig_pos>
        <strand>+</strand>
        <context>TTCATGTTTC[A/T]AAAAAAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGCTGATTTTGACAATATACACAACTATTGAACCCTCTATTCATGTTTC</left_flank>
        <right_flank>AAAAAAAATTGCTTTCAGACATTTTCGTCATTTTCAGATTTTTTGGAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTAGTTACAGTGGAATGACTTTTTTCTGTGGATCCGGAAGAAACTACTGATGTTGTGAGATGAGAGAGGGTTGGGGTTGATGTAGAATGAGTGGAACCTGAATATTGTACTGAACTTAATATTTCAGATAATTTTATTAAACTAGGGGACGAAACCGAATGTGTTTAAAAAAAATGAACTACAACGCGCGTCATAATTATAGGCCCCCCCCCCTCGAAATGAGTAAACTGAAAAAACCAAAAATGCTAACAGAAATCTGTAAACGCAGTTTTATTCAGCTTGTAAAAAAACCTACGTGTATTAATTTTCAGCTCAATTGAGTCATTTTTAAGCTCAGAGGGCTCAAAAGTCACTTCTTAGGCCGCGTCATGATTATAAGACCCCCTGGGAAAGGAAAAATCTGAAGTTTTTTAAGGAAAATTTTTAAATGTCAAAATGGTCTCAAAACAGCTGATTTTGACAATATACACAACTATTGAACCCTCTATTCATGTTTCAAAAAAAAATTGCTTTCAGACATTTTCGTCATTTTCAGATTTTTTGGAATAAATCGTGAATAACTTTGCTCCTACTTAAGCTTATGAGCTGAAATTTGTGGGAAAAATTCTAAATGTAAAATGAAGCAAGAATACGAGAAAAATGAAAAAAAAAATTCTTAATGAGATTTCGACCAGAATATTCGCAGAGAAAGTTATTTTCAAAAGTTTGAGAGTTTCATTAATTGCTAATTTTTTGTTGGGATATAGTTTCTGATTTTGAGAGACCTAGAATGATCCGAAATTCCAAAAATTGAATGCTCAGAAACTTTAAAGTTGCTGCAGTTCCACTCCACACATCCAACAGCATATTGTTTTAAAACGTTTTTCTAACAACTAGTTGTACTAGAAGTGATAGTTTTGACAGTGGATAAAAAATCCGATCTTAAAGAATGGATTAGATAATAAATGATGAAAAAATGTTGTGTTGTTTTCGATGTCACTAAATTAAACACTTTGATT</canonical>
            <polymorphic>CAGTAGTTACAGTGGAATGACTTTTTTCTGTGGATCCGGAAGAAACTACTGATGTTGTGAGATGAGAGAGGGTTGGGGTTGATGTAGAATGAGTGGAACCTGAATATTGTACTGAACTTAATATTTCAGATAATTTTATTAAACTAGGGGACGAAACCGAATGTGTTTAAAAAAAATGAACTACAACGCGCGTCATAATTATAGGCCCCCCCCCCTCGAAATGAGTAAACTGAAAAAACCAAAAATGCTAACAGAAATCTGTAAACGCAGTTTTATTCAGCTTGTAAAAAAACCTACGTGTATTAATTTTCAGCTCAATTGAGTCATTTTTAAGCTCAGAGGGCTCAAAAGTCACTTCTTAGGCCGCGTCATGATTATAAGACCCCCTGGGAAAGGAAAAATCTGAAGTTTTTTAAGGAAAATTTTTAAATGTCAAAATGGTCTCAAAACAGCTGATTTTGACAATATACACAACTATTGAACCCTCTATTCATGTTTCWAAAAAAAATTGCTTTCAGACATTTTCGTCATTTTCAGATTTTTTGGAATAAATCGTGAATAACTTTGCTCCTACTTAAGCTTATGAGCTGAAATTTGTGGGAAAAATTCTAAATGTAAAATGAAGCAAGAATACGAGAAAAATGAAAAAAAAAATTCTTAATGAGATTTCGACCAGAATATTCGCAGAGAAAGTTATTTTCAAAAGTTTGAGAGTTTCATTAATTGCTAATTTTTTGTTGGGATATAGTTTCTGATTTTGAGAGACCTAGAATGATCCGAAATTCCAAAAATTGAATGCTCAGAAACTTTAAAGTTGCTGCAGTTCCACTCCACACATCCAACAGCATATTGTTTTAAAACGTTTTTCTAACAACTAGTTGTACTAGAAGTGATAGTTTTGACAGTGGATAAAAAATCCGATCTTAAAGAATGGATTAGATAATAAATGATGAAAAAATGTTGTGTTGTTTTCGATGTCACTAAATTAAACACTTTGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAAAATGGTCTCAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>ATATTCTGGTCGAAATCTCATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCAAAATGGTCTCAAAACAGCTGATTTTGACAATATACACAACTATTGAACCCTCTATTCATGTTTCAAAAAAAAATTGCTTTCAGACATTTTCGTCATTTTCAGATTTTTTGGAATAAATCGTGAATAACTTTGCTCCTACTTAAGCTTATGAGCTGAAATTTGTGGGAAAAATTCTAAATGTAAAATGAAGCAAGAATACGAGAAAAATGAAAAAAAAAATTCTTAATGAGATTTCGACCAGAATAT</canonical_amplicon>
		<polymorphic_amplicon>GTCAAAATGGTCTCAAAACAGCTGATTTTGACAATATACACAACTATTGAACCCTCTATTCATGTTTCWAAAAAAAATTGCTTTCAGACATTTTCGTCATTTTCAGATTTTTTGGAATAAATCGTGAATAACTTTGCTCCTACTTAAGCTTATGAGCTGAAATTTGTGGGAAAAATTCTAAATGTAAAATGAAGCAAGAATACGAGAAAAATGAAAAAAAAAATTCTTAATGAGATTTCGACCAGAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34822</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>186087</contig_pos>
        <strand>+</strand>
        <context>TTGCTCCTAC[G/T]TAAGCTTATG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGTCATTTTCAGATTTTTTGGAATAAATCGTGAATAACTTTGCTCCTAC</left_flank>
        <right_flank>TAAGCTTATGAGCTGAAATTTGTGGGAAAAATTCTAAATGTAAAATGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGTTGATGTAGAATGAGTGGAACCTGAATATTGTACTGAACTTAATATTTCAGATAATTTTATTAAACTAGGGGACGAAACCGAATGTGTTTAAAAAAAATGAACTACAACGCGCGTCATAATTATAGGCCCCCCCCCCTCGAAATGAGTAAACTGAAAAAACCAAAAATGCTAACAGAAATCTGTAAACGCAGTTTTATTCAGCTTGTAAAAAAACCTACGTGTATTAATTTTCAGCTCAATTGAGTCATTTTTAAGCTCAGAGGGCTCAAAAGTCACTTCTTAGGCCGCGTCATGATTATAAGACCCCCTGGGAAAGGAAAAATCTGAAGTTTTTTAAGGAAAATTTTTAAATGTCAAAATGGTCTCAAAACAGCTGATTTTGACAATATACACAACTATTGAACCCTCTATTCATGTTTCAAAAAAAAATTGCTTTCAGACATTTTCGTCATTTTCAGATTTTTTGGAATAAATCGTGAATAACTTTGCTCCTACTTAAGCTTATGAGCTGAAATTTGTGGGAAAAATTCTAAATGTAAAATGAAGCAAGAATACGAGAAAAATGAAAAAAAAAATTCTTAATGAGATTTCGACCAGAATATTCGCAGAGAAAGTTATTTTCAAAAGTTTGAGAGTTTCATTAATTGCTAATTTTTTGTTGGGATATAGTTTCTGATTTTGAGAGACCTAGAATGATCCGAAATTCCAAAAATTGAATGCTCAGAAACTTTAAAGTTGCTGCAGTTCCACTCCACACATCCAACAGCATATTGTTTTAAAACGTTTTTCTAACAACTAGTTGTACTAGAAGTGATAGTTTTGACAGTGGATAAAAAATCCGATCTTAAAGAATGGATTAGATAATAAATGATGAAAAAATGTTGTGTTGTTTTCGATGTCACTAAATTAAACACTTTGATTGTGATGTACTTACTTGGCTCAGTGGCTGCTGAAGAAGGGTTGCTCACTGTGGATCCCAAGGAGCTAGTTTTTCCA</canonical>
            <polymorphic>GGGTTGATGTAGAATGAGTGGAACCTGAATATTGTACTGAACTTAATATTTCAGATAATTTTATTAAACTAGGGGACGAAACCGAATGTGTTTAAAAAAAATGAACTACAACGCGCGTCATAATTATAGGCCCCCCCCCCTCGAAATGAGTAAACTGAAAAAACCAAAAATGCTAACAGAAATCTGTAAACGCAGTTTTATTCAGCTTGTAAAAAAACCTACGTGTATTAATTTTCAGCTCAATTGAGTCATTTTTAAGCTCAGAGGGCTCAAAAGTCACTTCTTAGGCCGCGTCATGATTATAAGACCCCCTGGGAAAGGAAAAATCTGAAGTTTTTTAAGGAAAATTTTTAAATGTCAAAATGGTCTCAAAACAGCTGATTTTGACAATATACACAACTATTGAACCCTCTATTCATGTTTCAAAAAAAAATTGCTTTCAGACATTTTCGTCATTTTCAGATTTTTTGGAATAAATCGTGAATAACTTTGCTCCTACKTAAGCTTATGAGCTGAAATTTGTGGGAAAAATTCTAAATGTAAAATGAAGCAAGAATACGAGAAAAATGAAAAAAAAAATTCTTAATGAGATTTCGACCAGAATATTCGCAGAGAAAGTTATTTTCAAAAGTTTGAGAGTTTCATTAATTGCTAATTTTTTGTTGGGATATAGTTTCTGATTTTGAGAGACCTAGAATGATCCGAAATTCCAAAAATTGAATGCTCAGAAACTTTAAAGTTGCTGCAGTTCCACTCCACACATCCAACAGCATATTGTTTTAAAACGTTTTTCTAACAACTAGTTGTACTAGAAGTGATAGTTTTGACAGTGGATAAAAAATCCGATCTTAAAGAATGGATTAGATAATAAATGATGAAAAAATGTTGTGTTGTTTTCGATGTCACTAAATTAAACACTTTGATTGTGATGTACTTACTTGGCTCAGTGGCTGCTGAAGAAGGGTTGCTCACTGTGGATCCCAAGGAGCTAGTTTTTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTTAAG</site>
                <isoschizomers>
                    <enzyme>AflII</enzyme>
                    <enzyme>BfrI</enzyme>
                    <enzyme>BspTI</enzyme>
                    <enzyme>Bst98I</enzyme>
                    <enzyme>MspCI</enzyme>
                    <enzyme>Vha464I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>149 136 89 89 83 83 69 62 62 46 43 28 27 21 13</canonical_bands>
                <polymorphic_bands>232 136 89 89 83 69 62 62 46 43 28 27 21 13</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTGAACCCTCTATTCATGTTT</pcr_primer_p1>
		<pcr_primer_p2>GCAATTAATGAAACTCTCAAACT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATTGAACCCTCTATTCATGTTTCAAAAAAAAATTGCTTTCAGACATTTTCGTCATTTTCAGATTTTTTGGAATAAATCGTGAATAACTTTGCTCCTACTTAAGCTTATGAGCTGAAATTTGTGGGAAAAATTCTAAATGTAAAATGAAGCAAGAATACGAGAAAAATGAAAAAAAAAATTCTTAATGAGATTTCGACCAGAATATTCGCAGAGAAAGTTATTTTCAAAAGTTTGAGAGTTTCATTAATTGC</canonical_amplicon>
		<polymorphic_amplicon>TATTGAACCCTCTATTCATGTTTCAAAAAAAAATTGCTTTCAGACATTTTCGTCATTTTCAGATTTTTTGGAATAAATCGTGAATAACTTTGCTCCTACKTAAGCTTATGAGCTGAAATTTGTGGGAAAAATTCTAAATGTAAAATGAAGCAAGAATACGAGAAAAATGAAAAAAAAAATTCTTAATGAGATTTCGACCAGAATATTCGCAGAGAAAGTTATTTTCAAAAGTTTGAGAGTTTCATTAATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34823</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>186304</contig_pos>
        <strand>+</strand>
        <context>ATTCCAAAAA[A/T]TGAATGCTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATATAGTTTCTGATTTTGAGAGACCTAGAATGATCCGAAATTCCAAAAA</left_flank>
        <right_flank>TGAATGCTCAGAAACTTTAAAGTTGCTGCAGTTCCACTCCACACATCCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTACGTGTATTAATTTTCAGCTCAATTGAGTCATTTTTAAGCTCAGAGGGCTCAAAAGTCACTTCTTAGGCCGCGTCATGATTATAAGACCCCCTGGGAAAGGAAAAATCTGAAGTTTTTTAAGGAAAATTTTTAAATGTCAAAATGGTCTCAAAACAGCTGATTTTGACAATATACACAACTATTGAACCCTCTATTCATGTTTCAAAAAAAAATTGCTTTCAGACATTTTCGTCATTTTCAGATTTTTTGGAATAAATCGTGAATAACTTTGCTCCTACTTAAGCTTATGAGCTGAAATTTGTGGGAAAAATTCTAAATGTAAAATGAAGCAAGAATACGAGAAAAATGAAAAAAAAAATTCTTAATGAGATTTCGACCAGAATATTCGCAGAGAAAGTTATTTTCAAAAGTTTGAGAGTTTCATTAATTGCTAATTTTTTGTTGGGATATAGTTTCTGATTTTGAGAGACCTAGAATGATCCGAAATTCCAAAAATTGAATGCTCAGAAACTTTAAAGTTGCTGCAGTTCCACTCCACACATCCAACAGCATATTGTTTTAAAACGTTTTTCTAACAACTAGTTGTACTAGAAGTGATAGTTTTGACAGTGGATAAAAAATCCGATCTTAAAGAATGGATTAGATAATAAATGATGAAAAAATGTTGTGTTGTTTTCGATGTCACTAAATTAAACACTTTGATTGTGATGTACTTACTTGGCTCAGTGGCTGCTGAAGAAGGGTTGCTCACTGTGGATCCCAAGGAGCTAGTTTTTCCAGGGGTTACAGATGAGACAGGAGTCAGGGTGGAGTGATCTGTTATTGTGGATCCCATGGAACTAGATGTTTCAGGTGTGATTGGTGGGACAGGAGATGAAGAAGAGGGTTTGGTTACTGTGGATCCCGCATAGCTAGATGATACGGCTGAGGTTGATGGTACATGAGATGAAGTAGAGGAGCCGGTTATTGTGGATCCCAAGAAAGTAGATGTTGAAG</canonical>
            <polymorphic>CCTACGTGTATTAATTTTCAGCTCAATTGAGTCATTTTTAAGCTCAGAGGGCTCAAAAGTCACTTCTTAGGCCGCGTCATGATTATAAGACCCCCTGGGAAAGGAAAAATCTGAAGTTTTTTAAGGAAAATTTTTAAATGTCAAAATGGTCTCAAAACAGCTGATTTTGACAATATACACAACTATTGAACCCTCTATTCATGTTTCAAAAAAAAATTGCTTTCAGACATTTTCGTCATTTTCAGATTTTTTGGAATAAATCGTGAATAACTTTGCTCCTACTTAAGCTTATGAGCTGAAATTTGTGGGAAAAATTCTAAATGTAAAATGAAGCAAGAATACGAGAAAAATGAAAAAAAAAATTCTTAATGAGATTTCGACCAGAATATTCGCAGAGAAAGTTATTTTCAAAAGTTTGAGAGTTTCATTAATTGCTAATTTTTTGTTGGGATATAGTTTCTGATTTTGAGAGACCTAGAATGATCCGAAATTCCAAAAAWTGAATGCTCAGAAACTTTAAAGTTGCTGCAGTTCCACTCCACACATCCAACAGCATATTGTTTTAAAACGTTTTTCTAACAACTAGTTGTACTAGAAGTGATAGTTTTGACAGTGGATAAAAAATCCGATCTTAAAGAATGGATTAGATAATAAATGATGAAAAAATGTTGTGTTGTTTTCGATGTCACTAAATTAAACACTTTGATTGTGATGTACTTACTTGGCTCAGTGGCTGCTGAAGAAGGGTTGCTCACTGTGGATCCCAAGGAGCTAGTTTTTCCAGGGGTTACAGATGAGACAGGAGTCAGGGTGGAGTGATCTGTTATTGTGGATCCCATGGAACTAGATGTTTCAGGTGTGATTGGTGGGACAGGAGATGAAGAAGAGGGTTTGGTTACTGTGGATCCCGCATAGCTAGATGATACGGCTGAGGTTGATGGTACATGAGATGAAGTAGAGGAGCCGGTTATTGTGGATCCCAAGAAAGTAGATGTTGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>309 194 104 86 85 69 52 48 13 12 12 9 7</canonical_bands>
                <polymorphic_bands>309 203 104 86 85 69 52 48 13 12 12 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGGATATAGTTTCTGATTTTG</pcr_primer_p1>
		<pcr_primer_p2>AATTTAGTGACATCGAAAACAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGGGATATAGTTTCTGATTTTGAGAGACCTAGAATGATCCGAAATTCCAAAAATTGAATGCTCAGAAACTTTAAAGTTGCTGCAGTTCCACTCCACACATCCAACAGCATATTGTTTTAAAACGTTTTTCTAACAACTAGTTGTACTAGAAGTGATAGTTTTGACAGTGGATAAAAAATCCGATCTTAAAGAATGGATTAGATAATAAATGATGAAAAAATGTTGTGTTGTTTTCGATGTCACTAAATT</canonical_amplicon>
		<polymorphic_amplicon>TTGGGATATAGTTTCTGATTTTGAGAGACCTAGAATGATCCGAAATTCCAAAAAWTGAATGCTCAGAAACTTTAAAGTTGCTGCAGTTCCACTCCACACATCCAACAGCATATTGTTTTAAAACGTTTTTCTAACAACTAGTTGTACTAGAAGTGATAGTTTTGACAGTGGATAAAAAATCCGATCTTAAAGAATGGATTAGATAATAAATGATGAAAAAATGTTGTGTTGTTTTCGATGTCACTAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34824</snp_id>
        <super_contig>c009500595.Contig1</super_contig>
        <contig_pos>186911</contig_pos>
        <strand></strand>
        <context>AAGTAAGGGA[A/G]CCGGTTACTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGCTGGATGATGCGGCTGTGGTAGATGGGACTGGAGATGAAGTAAGGGA</left_flank>
        <right_flank>CCGGTTACTGTGGATCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGG</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACAGTGGATAAAAAATCCGATCTTAAAGAATGGATTAGATAATAAATGATGAAAAAATGTTGTGTTGTTTTCGATGTCACTAAATTAAACACTTTGATTGTGATGTACTTACTTGGCTCAGTGGCTGCTGAAGAAGGGTTGCTCACTGTGGATCCCAAGGAGCTAGTTTTTCCAGGGGTTACAGATGAGACAGGAGTCAGGGTGGAGTGATCTGTTATTGTGGATCCCATGGAACTAGATGTTTCAGGTGTGATTGGTGGGACAGGAGATGAAGAAGAGGGTTTGGTTACTGTGGATCCCGCATAGCTAGATGATACGGCTGAGGTTGATGGTACATGAGATGAAGTAGAGGAGCCGGTTATTGTGGATCCCAAGAAAGTAGATGTTGAAGCTGTGTTAGTTGGGACAGAAGATGGACTAGAGGAGCCGACTACTGTGGATCCTATGGAGCTGGATGATGCGGCTGTGGTAGATGGGACTGGAGATGAAGTAAGGGAACCGGTTACTGTGGATCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGGTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAGAAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGGAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTAGATGTTGCCTGTGTGGTTGATGGGACAGCGGATAAAGAAGA</canonical>
            <polymorphic>TGACAGTGGATAAAAAATCCGATCTTAAAGAATGGATTAGATAATAAATGATGAAAAAATGTTGTGTTGTTTTCGATGTCACTAAATTAAACACTTTGATTGTGATGTACTTACTTGGCTCAGTGGCTGCTGAAGAAGGGTTGCTCACTGTGGATCCCAAGGAGCTAGTTTTTCCAGGGGTTACAGATGAGACAGGAGTCAGGGTGGAGTGATCTGTTATTGTGGATCCCATGGAACTAGATGTTTCAGGTGTGATTGGTGGGACAGGAGATGAAGAAGAGGGTTTGGTTACTGTGGATCCCGCATAGCTAGATGATACGGCTGAGGTTGATGGTACATGAGATGAAGTAGAGGAGCCGGTTATTGTGGATCCCAAGAAAGTAGATGTTGAAGCTGTGTTAGTTGGGACAGAAGATGGACTAGAGGAGCCGACTACTGTGGATCCTATGGAGCTGGATGATGCGGCTGTGGTAGATGGGACTGGAGATGAAGTAAGGGARCCGGTTACTGTGGATCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGCGCCTGAGCTGGATGGTACAGGAGATAAAGTAGAGGAGCCGGTTATTGTGGATCCCACGGAGCTAGATGTTACGGCGGCGGTAGATGGGACTGGAGATGAAGTAAGGGAGCCGGTTACTGTGGATCTCATGGAACTAGATGTTGGGGCTGTGGTAGTTGGGGCAAAAGATGGGCTAGAGGAAGCTGGTACTGTGGATCCCAAGGTGCTAGATGTTGAGGTTGTGGTAGTTGGGATAGGAGAAGGACTAGAGAAGCCAATGACTGTGGATCCCACGGAGCTAGATGTTGCGGGTGTGGTTGATGGGACAGGAGATGGAGAAGAAAAGTCGGTTACTGTGGAACCCTTAGAACTAGATGTTGCCTGTGTGGTTGATGGGACAGCGGATAAAGAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACCGGT</site>
                <isoschizomers>
                    <enzyme>AgeI</enzyme>
                    <enzyme>AsiAI</enzyme>
                    <enzyme>BshTI</enzyme>
                    <enzyme>CspAI</enzyme>
                    <enzyme>PinAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 428 72</canonical_bands>
                <polymorphic_bands>572 428</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>500 428 72</canonical_bands>
                <polymorphic_bands>572 428</polymorphic_bands>
            </assay>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>356 284 144 72 72 72</canonical_bands>
                <polymorphic_bands>356 284 216 72 72</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTGTGGATCCCAAGAAAGTA</pcr_primer_p1>
		<pcr_primer_p2>GCAACATCTAGCTCCATAGG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TATTGTGGATCCCAAGAAAGTAGATGTTGAAGCTGTGTTAGTTGGGACAGAAGATGGACTAGAGGAGCCGACTACTGTGGATCCTATGGAGCTGGATGATGCGGCTGTGGTAGATGGGACTGGAGATGAAGTAAGGGAACCGGTTACTGTGGATCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGC</canonical_amplicon>
		<polymorphic_amplicon>TATTGTGGATCCCAAGAAAGTAGATGTTGAAGCTGTGTTAGTTGGGACAGAAGATGGACTAGAGGAGCCGACTACTGTGGATCCTATGGAGCTGGATGATGCGGCTGTGGTAGATGGGACTGGAGATGAAGTAAGGGARCCGGTTACTGTGGATCCAAAGGAACTAGATGTTGAGGCTGTGGAAGTTGGGACAGAAGATGGACTAGAGGAACCGGTTACTGTGGATCCTATGGAGCTAGATGTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34825</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>6313</contig_pos>
        <strand>+</strand>
        <context>CAATTGCTGG[C/T]AAAAAAMACG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAACGATAAGGTGTTTATGGAATCATATGTCTCTAAACAATTGCTGG</left_flank>
        <right_flank>AAAAAAAACGTACGAGTGTTGTTTATCTTGAGCGCCGGGTTCTTTATCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAAAACATTTCGTCTGATGACAACTTTTTGATGCCTTTTACAGAAAACGAGACATATAGGCTCAACGTTGACGATTTGGAGAGGGGGAGAAGCATTATGTTAAAGTGATTACAGTTATTATGCCAGTATGTTAGCCACATCGTTTTGCACTATTTTCTTTTTTAACTCCTTGATGATGTTCACAAGGTCCAAAACTTCAAGATTAGTTTTCAGATTGGATGCGTTTCCTGAAATTTTTAATTAATTAACTCAAATTAAGCAGTAATTAATTAAACCATGAGTGAGGGTGATTTGGCGGCAATATGGGCAGTAAACGAATTGTTTGCCGTTCTGAAGCGAGAGGTTGTGAGCACAATCGGCGCATAGAGTGTGACCGCATTCAATCAATATTTTTGGGAGGAGTTTCTCGGAGTATTCAAAACTGCAGATATGACATTCTGACCTGAAAAAAAACGATAAGGTGTTTATGGAATCATATGTCTCTAAACAATTGCTGGAAAAAAAAACGTACGAGTGTTGTTTATCTTGAGCGCCGGGTTCTTTATCGACCGGTTGAATTGAAACCAAATTACTTCCCGGGAAAAATGTGCGTTGTTCCGCCAGAATATGAAGAAAGTCGAGGCTTGCAATGAAGGTGATTGGAGAGAAGATTCCTTGAACCATGATGATAGCAGCAAAATCCCATCCAGCAGTTATTTCATATGCGATCCGAATTGAAGCAACCAAGATCACAGCGTTTCCAACAAATACAAAAGAAACTACGTCTTCATTGTAGAAAATTTCAGTTGGGAATTGATAGCGGTTCAAGTAAAGAACCAAGTGTATGATGATGAGTGGAGCAATCACGAGGAGGATCAACATCTAAAATTCTGAGCTTGCCGTTTTTGCTGATGCACTTTGAGCTTAATTATCTAGGTTTCTGTGAGAGATATCAAAAATTGACCAACGGATGAATACCAGGTGATGTTATAATAAGTAATTCATCAGTAGAACATTTT</canonical>
            <polymorphic>TAAAAAACATTTCGTCTGATGACAACTTTTTGATGCCTTTTACAGAAAACGAGACATATAGGCTCAACGTTGACGATTTGGAGAGGGGGAGAAGCATTATGTTAAAGTGATTACAGTTATTATGCCAGTATGTTAGCCACATCGTTTTGCACTATTTTCTTTTTTAACTCCTTGATGATGTTCACAAGGTCCAAAACTTCAAGATTAGTTTTCAGATTGGATGCGTTTCCTGAAATTTTTAATTAATTAACTCAAATTAAGCAGTAATTAATTAAACCATGAGTGAGGGTGATTTGGCGGCAATATGGGCAGTAAACGAATTGTTTGCCGTTCTGAAGCGAGAGGTTGTGAGCACAATCGGCGCATAGAGTGTGACCGCATTCAATCAATATTTTTGGGAGGAGTTTCTCGGAGTATTCAAAACTGCAGATATGACATTCTGACCTGAAAAAAAACGATAAGGTGTTTATGGAATCATATGTCTCTAAACAATTGCTGGYAAAAAAAACGTACGAGTGTTGTTTATCTTGAGCGCCGGGTTCTTTATCGACCGGTTGAATTGAAACCAAATTACTTCCCGGGAAAAATGTGCGTTGTTCCGCCAGAATATGAAGAAAGTCGAGGCTTGCAATGAAGGTGATTGGAGAGAAGATTCCTTGAACCATGATGATAGCAGCAAAATCCCATCCAGCAGTTATTTCATATGCGATCCGAATTGAAGCAACCAAGATCACAGCGTTTCCAACAAATACAAAAGAAACTACGTCTTCATTGTAGAAAATTTCAGTTGGGAATTGATAGCGGTTCAAGTAAAGAACCAAGTGTATGATGATGAGTGGAGCAATCACGAGGAGGATCAACATCTAAAATTCTGAGCTTGCCGTTTTTGCTGATGCACTTTGAGCTTAATTATCTAGGTTTCTGTGAGAGATATCAAAAATTGACCAACGGATGAATACCAGGTGATGTTATAATAAGTAATTCATCAGTAGAACATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATATGACATTCTGACCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>CTGCTATCATCATGGTTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGATATGACATTCTGACCTGAAAAAAAACGATAAGGTGTTTATGGAATCATATGTCTCTAAACAATTGCTGGAAAAAAAAACGTACGAGTGTTGTTTATCTTGAGCGCCGGGTTCTTTATCGACCGGTTGAATTGAAACCAAATTACTTCCCGGGAAAAATGTGCGTTGTTCCGCCAGAATATGAAGAAAGTCGAGGCTTGCAATGAAGGTGATTGGAGAGAAGATTCCTTGAACCATGATGATAGCAG</canonical_amplicon>
		<polymorphic_amplicon>AGATATGACATTCTGACCTGAAAAAAAACGATAAGGTGTTTATGGAATCATATGTCTCTAAACAATTGCTGGYAAAAAAAACGTACGAGTGTTGTTTATCTTGAGCGCCGGGTTCTTTATCGACCGGTTGAATTGAAACCAAATTACTTCCCGGGAAAAATGTGCGTTGTTCCGCCAGAATATGAAGAAAGTCGAGGCTTGCAATGAAGGTGATTGGAGAGAAGATTCCTTGAACCATGATGATAGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34826</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>9067</contig_pos>
        <strand>+</strand>
        <context>GGATCCGATA[C/T]AAAAAATAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGATGGAACGATTCATCATGTCTTCATAACCTCAAAGCAGGATCCGATA</left_flank>
        <right_flank>AAAAAATAGCATCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAACCGCTATGCAACAATGCAGAAAAGTTCTGAAACGTCAGGTTCTGAATTGTCTAGTTCTGAAACGTCGGGGTTCTGAAACGTCGGGTGCTGAAACGTCCAAGATTCGATTTAGGCTTTTCGGAGCTTCCGAGAGCTCTCAACAAAAAAAAGAAAAAAAAAGAAAAGGAAATGATAAAATTAGTGATTATGTGAGCTTTTATACTCATTCAAATTTCACACTTTTGTTTCTCTGCGTCTTTCTTCTCTATCTCGTTACTAAGCGACCAGCTCGTGGTTGGCACTATAGGTTTACTAATTGCGGACTCCTGGGGCTAAATCAGGAAAAATTTTCTGCTGATAGAAGTCTCTTGAAAAGTTAAATTCGTATAGTTGGCTCTTGTTTTTCAAATGATCACTAGAATTGCTAGAAGGAGCATTCTGTTTGGATAGATAGGGAACATTTCTATGATGGAACGATTCATCATGTCTTCATAACCTCAAAGCAGGATCCGATAAAAAAAATAGCATCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTCTCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGCGCAAAAAAATTTTGCCAACGCATATAAGTTTATTTAGGCGTACTTTTAGTAATGACATCGTTTTCGAAATTATGAGCAAAATTTTCGTTTTTTTTTAAGTTTCCGACTGTGAGCTTAGCAATATTTGTAGTACGGTAGAGAAGAAAATAAATTTTTTTTAAACAAAAAACAACGAATTGGAATGAACAATGAGCGTTCGGTGTGTAAAACCGCTATGTAACAATGCAGAAAAGTTCTGAAACGTCGGGTTCTGAATCATCGAGTTTTGAAATGTTGAGTTCTGCAACGTCGGGGGCTTATACGTCCAGGATCCGATTTTCAACAGGCCTCTAAGAGCTTCCGAAAGCCTTCACCAGAGAAAGAAAAAAGTGAAAATGATAAAATT</canonical>
            <polymorphic>CAAAACCGCTATGCAACAATGCAGAAAAGTTCTGAAACGTCAGGTTCTGAATTGTCTAGTTCTGAAACGTCGGGGTTCTGAAACGTCGGGTGCTGAAACGTCCAAGATTCGATTTAGGCTTTTCGGAGCTTCCGAGAGCTCTCAACAAAAAAAAGAAAAAAAAAGAAAAGGAAATGATAAAATTAGTGATTATGTGAGCTTTTATACTCATTCAAATTTCACACTTTTGTTTCTCTGCGTCTTTCTTCTCTATCTCGTTACTAAGCGACCAGCTCGTGGTTGGCACTATAGGTTTACTAATTGCGGACTCCTGGGGCTAAATCAGGAAAAATTTTCTGCTGATAGAAGTCTCTTGAAAAGTTAAATTCGTATAGTTGGCTCTTGTTTTTCAAATGATCACTAGAATTGCTAGAAGGAGCATTCTGTTTGGATAGATAGGGAACATTTCTATGATGGAACGATTCATCATGTCTTCATAACCTCAAAGCAGGATCCGATAYAAAAAATAGCATCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTCTCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGCGCAAAAAAATTTTGCCAACGCATATAAGTTTATTTAGGCGTACTTTTAGTAATGACATCGTTTTCGAAATTATGAGCAAAATTTTCGTTTTTTTTTAAGTTTCCGACTGTGAGCTTAGCAATATTTGTAGTACGGTAGAGAAGAAAATAAATTTTTTTTAAACAAAAAACAACGAATTGGAATGAACAATGAGCGTTCGGTGTGTAAAACCGCTATGTAACAATGCAGAAAAGTTCTGAAACGTCGGGTTCTGAATCATCGAGTTTTGAAATGTTGAGTTCTGCAACGTCGGGGGCTTATACGTCCAGGATCCGATTTTCAACAGGCCTCTAAGAGCTTCCGAAAGCCTTCACCAGAGAAAGAAAAAAGTGAAAATGATAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATAGTTGGCTCTTGTTTTTCA</pcr_primer_p1>
		<pcr_primer_p2>GCACTTTTAGACATCGTTTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTATAGTTGGCTCTTGTTTTTCAAATGATCACTAGAATTGCTAGAAGGAGCATTCTGTTTGGATAGATAGGGAACATTTCTATGATGGAACGATTCATCATGTCTTCATAACCTCAAAGCAGGATCCGATAAAAAAAATAGCATCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTCTCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGC</canonical_amplicon>
		<polymorphic_amplicon>GTATAGTTGGCTCTTGTTTTTCAAATGATCACTAGAATTGCTAGAAGGAGCATTCTGTTTGGATAGATAGGGAACATTTCTATGATGGAACGATTCATCATGTCTTCATAACCTCAAAGCAGGATCCGATAYAAAAAATAGCATCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTCTCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34827</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>9078</contig_pos>
        <strand>+</strand>
        <context>AAAAAATAGC[C/T]TYTCTACATT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCATCATGTCTTCATAACCTCAAAGCAGGATCCGATAAAAAAAATAGC</left_flank>
        <right_flank>TCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCAACAATGCAGAAAAGTTCTGAAACGTCAGGTTCTGAATTGTCTAGTTCTGAAACGTCGGGGTTCTGAAACGTCGGGTGCTGAAACGTCCAAGATTCGATTTAGGCTTTTCGGAGCTTCCGAGAGCTCTCAACAAAAAAAAGAAAAAAAAAGAAAAGGAAATGATAAAATTAGTGATTATGTGAGCTTTTATACTCATTCAAATTTCACACTTTTGTTTCTCTGCGTCTTTCTTCTCTATCTCGTTACTAAGCGACCAGCTCGTGGTTGGCACTATAGGTTTACTAATTGCGGACTCCTGGGGCTAAATCAGGAAAAATTTTCTGCTGATAGAAGTCTCTTGAAAAGTTAAATTCGTATAGTTGGCTCTTGTTTTTCAAATGATCACTAGAATTGCTAGAAGGAGCATTCTGTTTGGATAGATAGGGAACATTTCTATGATGGAACGATTCATCATGTCTTCATAACCTCAAAGCAGGATCCGATAAAAAAAATAGCATCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTCTCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGCGCAAAAAAATTTTGCCAACGCATATAAGTTTATTTAGGCGTACTTTTAGTAATGACATCGTTTTCGAAATTATGAGCAAAATTTTCGTTTTTTTTTAAGTTTCCGACTGTGAGCTTAGCAATATTTGTAGTACGGTAGAGAAGAAAATAAATTTTTTTTAAACAAAAAACAACGAATTGGAATGAACAATGAGCGTTCGGTGTGTAAAACCGCTATGTAACAATGCAGAAAAGTTCTGAAACGTCGGGTTCTGAATCATCGAGTTTTGAAATGTTGAGTTCTGCAACGTCGGGGGCTTATACGTCCAGGATCCGATTTTCAACAGGCCTCTAAGAGCTTCCGAAAGCCTTCACCAGAGAAAGAAAAAAGTGAAAATGATAAAATTAGTGTTTATCG</canonical>
            <polymorphic>TGCAACAATGCAGAAAAGTTCTGAAACGTCAGGTTCTGAATTGTCTAGTTCTGAAACGTCGGGGTTCTGAAACGTCGGGTGCTGAAACGTCCAAGATTCGATTTAGGCTTTTCGGAGCTTCCGAGAGCTCTCAACAAAAAAAAGAAAAAAAAAGAAAAGGAAATGATAAAATTAGTGATTATGTGAGCTTTTATACTCATTCAAATTTCACACTTTTGTTTCTCTGCGTCTTTCTTCTCTATCTCGTTACTAAGCGACCAGCTCGTGGTTGGCACTATAGGTTTACTAATTGCGGACTCCTGGGGCTAAATCAGGAAAAATTTTCTGCTGATAGAAGTCTCTTGAAAAGTTAAATTCGTATAGTTGGCTCTTGTTTTTCAAATGATCACTAGAATTGCTAGAAGGAGCATTCTGTTTGGATAGATAGGGAACATTTCTATGATGGAACGATTCATCATGTCTTCATAACCTCAAAGCAGGATCCGATAAAAAAAATAGCYTCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTCTCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGCGCAAAAAAATTTTGCCAACGCATATAAGTTTATTTAGGCGTACTTTTAGTAATGACATCGTTTTCGAAATTATGAGCAAAATTTTCGTTTTTTTTTAAGTTTCCGACTGTGAGCTTAGCAATATTTGTAGTACGGTAGAGAAGAAAATAAATTTTTTTTAAACAAAAAACAACGAATTGGAATGAACAATGAGCGTTCGGTGTGTAAAACCGCTATGTAACAATGCAGAAAAGTTCTGAAACGTCGGGTTCTGAATCATCGAGTTTTGAAATGTTGAGTTCTGCAACGTCGGGGGCTTATACGTCCAGGATCCGATTTTCAACAGGCCTCTAAGAGCTTCCGAAAGCCTTCACCAGAGAAAGAAAAAAGTGAAAATGATAAAATTAGTGTTTATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATAGTTGGCTCTTGTTTTTCA</pcr_primer_p1>
		<pcr_primer_p2>GCACTTTTAGACATCGTTTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTATAGTTGGCTCTTGTTTTTCAAATGATCACTAGAATTGCTAGAAGGAGCATTCTGTTTGGATAGATAGGGAACATTTCTATGATGGAACGATTCATCATGTCTTCATAACCTCAAAGCAGGATCCGATAAAAAAAATAGCATCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTCTCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGC</canonical_amplicon>
		<polymorphic_amplicon>GTATAGTTGGCTCTTGTTTTTCAAATGATCACTAGAATTGCTAGAAGGAGCATTCTGTTTGGATAGATAGGGAACATTTCTATGATGGAACGATTCATCATGTCTTCATAACCTCAAAGCAGGATCCGATAAAAAAAATAGCYTCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTCTCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34828</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>9191</contig_pos>
        <strand>+</strand>
        <context>GCGCAAAAAA[A/T]TTTTGCCAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGCGCAAAAAA</left_flank>
        <right_flank>TTTTGCCAACGCATATAAGTTTATTTAGGCGTACTTTTAGTAATGACATC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGCTTCCGAGAGCTCTCAACAAAAAAAAGAAAAAAAAAGAAAAGGAAATGATAAAATTAGTGATTATGTGAGCTTTTATACTCATTCAAATTTCACACTTTTGTTTCTCTGCGTCTTTCTTCTCTATCTCGTTACTAAGCGACCAGCTCGTGGTTGGCACTATAGGTTTACTAATTGCGGACTCCTGGGGCTAAATCAGGAAAAATTTTCTGCTGATAGAAGTCTCTTGAAAAGTTAAATTCGTATAGTTGGCTCTTGTTTTTCAAATGATCACTAGAATTGCTAGAAGGAGCATTCTGTTTGGATAGATAGGGAACATTTCTATGATGGAACGATTCATCATGTCTTCATAACCTCAAAGCAGGATCCGATAAAAAAAATAGCATCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTCTCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGCGCAAAAAAATTTTGCCAACGCATATAAGTTTATTTAGGCGTACTTTTAGTAATGACATCGTTTTCGAAATTATGAGCAAAATTTTCGTTTTTTTTTAAGTTTCCGACTGTGAGCTTAGCAATATTTGTAGTACGGTAGAGAAGAAAATAAATTTTTTTTAAACAAAAAACAACGAATTGGAATGAACAATGAGCGTTCGGTGTGTAAAACCGCTATGTAACAATGCAGAAAAGTTCTGAAACGTCGGGTTCTGAATCATCGAGTTTTGAAATGTTGAGTTCTGCAACGTCGGGGGCTTATACGTCCAGGATCCGATTTTCAACAGGCCTCTAAGAGCTTCCGAAAGCCTTCACCAGAGAAAGAAAAAAGTGAAAATGATAAAATTAGTGTTTATCGGAGCTTTTATACTCATTCTAATTTCACACTTTTGTTTCTCTGCGTCTCTCTTCTCTCTCTCTCGTTGCTAAGCGACGAGCTCGTTGTTGGCACTATAGGTTAACTAATTGCAG</canonical>
            <polymorphic>GGAGCTTCCGAGAGCTCTCAACAAAAAAAAGAAAAAAAAAGAAAAGGAAATGATAAAATTAGTGATTATGTGAGCTTTTATACTCATTCAAATTTCACACTTTTGTTTCTCTGCGTCTTTCTTCTCTATCTCGTTACTAAGCGACCAGCTCGTGGTTGGCACTATAGGTTTACTAATTGCGGACTCCTGGGGCTAAATCAGGAAAAATTTTCTGCTGATAGAAGTCTCTTGAAAAGTTAAATTCGTATAGTTGGCTCTTGTTTTTCAAATGATCACTAGAATTGCTAGAAGGAGCATTCTGTTTGGATAGATAGGGAACATTTCTATGATGGAACGATTCATCATGTCTTCATAACCTCAAAGCAGGATCCGATAAAAAAAATAGCATCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTCTCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGCGCAAAAAAWTTTTGCCAACGCATATAAGTTTATTTAGGCGTACTTTTAGTAATGACATCGTTTTCGAAATTATGAGCAAAATTTTCGTTTTTTTTTAAGTTTCCGACTGTGAGCTTAGCAATATTTGTAGTACGGTAGAGAAGAAAATAAATTTTTTTTAAACAAAAAACAACGAATTGGAATGAACAATGAGCGTTCGGTGTGTAAAACCGCTATGTAACAATGCAGAAAAGTTCTGAAACGTCGGGTTCTGAATCATCGAGTTTTGAAATGTTGAGTTCTGCAACGTCGGGGGCTTATACGTCCAGGATCCGATTTTCAACAGGCCTCTAAGAGCTTCCGAAAGCCTTCACCAGAGAAAGAAAAAAGTGAAAATGATAAAATTAGTGTTTATCGGAGCTTTTATACTCATTCTAATTTCACACTTTTGTTTCTCTGCGTCTCTCTTCTCTCTCTCTCGTTGCTAAGCGACGAGCTCGTTGTTGGCACTATAGGTTAACTAATTGCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>360 194 115 90 72 70 37 34 28</canonical_bands>
                <polymorphic_bands>360 194 115 109 90 70 34 28</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>207 154 86 84 70 60 56 40 37 34 34 34 31 25 21 12 8 7</canonical_bands>
                <polymorphic_bands>207 154 97 86 84 70 56 40 34 34 34 31 25 21 12 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGATTCATCATGTCTTCATAAC</pcr_primer_p1>
		<pcr_primer_p2>AAAAACGAAAATTTTGCTCATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGATTCATCATGTCTTCATAACCTCAAAGCAGGATCCGATAAAAAAAATAGCATCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTCTCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGCGCAAAAAAATTTTGCCAACGCATATAAGTTTATTTAGGCGTACTTTTAGTAATGACATCGTTTTCGAAATTATGAGCAAAATTTTCGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>ACGATTCATCATGTCTTCATAACCTCAAAGCAGGATCCGATAAAAAAAATAGCATCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTCTCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGCGCAAAAAAWTTTTGCCAACGCATATAAGTTTATTTAGGCGTACTTTTAGTAATGACATCGTTTTCGAAATTATGAGCAAAATTTTCGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34829</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>9277</contig_pos>
        <strand>+</strand>
        <context>TCGTTTTTTT[A/T]TAAGTTTCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTAGTAATGACATCGTTTTCGAAATTATGAGCAAAATTTTCGTTTTTTT</left_flank>
        <right_flank>TAAGTTTCCGACTGTGAGCTTAGCAATATTTGTAGTACGGTAGAGAAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAAATTTCACACTTTTGTTTCTCTGCGTCTTTCTTCTCTATCTCGTTACTAAGCGACCAGCTCGTGGTTGGCACTATAGGTTTACTAATTGCGGACTCCTGGGGCTAAATCAGGAAAAATTTTCTGCTGATAGAAGTCTCTTGAAAAGTTAAATTCGTATAGTTGGCTCTTGTTTTTCAAATGATCACTAGAATTGCTAGAAGGAGCATTCTGTTTGGATAGATAGGGAACATTTCTATGATGGAACGATTCATCATGTCTTCATAACCTCAAAGCAGGATCCGATAAAAAAAATAGCATCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTCTCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGCGCAAAAAAATTTTGCCAACGCATATAAGTTTATTTAGGCGTACTTTTAGTAATGACATCGTTTTCGAAATTATGAGCAAAATTTTCGTTTTTTTTTAAGTTTCCGACTGTGAGCTTAGCAATATTTGTAGTACGGTAGAGAAGAAAATAAATTTTTTTTAAACAAAAAACAACGAATTGGAATGAACAATGAGCGTTCGGTGTGTAAAACCGCTATGTAACAATGCAGAAAAGTTCTGAAACGTCGGGTTCTGAATCATCGAGTTTTGAAATGTTGAGTTCTGCAACGTCGGGGGCTTATACGTCCAGGATCCGATTTTCAACAGGCCTCTAAGAGCTTCCGAAAGCCTTCACCAGAGAAAGAAAAAAGTGAAAATGATAAAATTAGTGTTTATCGGAGCTTTTATACTCATTCTAATTTCACACTTTTGTTTCTCTGCGTCTCTCTTCTCTCTCTCTCGTTGCTAAGCGACGAGCTCGTTGTTGGCACTATAGGTTAACTAATTGCAGACTCTTGGGACTTAATCAGGAAAAATTTCTGCCGAAAAGAAGTCGTCTGAAAAACAAAATCGTATAGTTGGGGCTTTTGAAGTGAT</canonical>
            <polymorphic>TTCAAATTTCACACTTTTGTTTCTCTGCGTCTTTCTTCTCTATCTCGTTACTAAGCGACCAGCTCGTGGTTGGCACTATAGGTTTACTAATTGCGGACTCCTGGGGCTAAATCAGGAAAAATTTTCTGCTGATAGAAGTCTCTTGAAAAGTTAAATTCGTATAGTTGGCTCTTGTTTTTCAAATGATCACTAGAATTGCTAGAAGGAGCATTCTGTTTGGATAGATAGGGAACATTTCTATGATGGAACGATTCATCATGTCTTCATAACCTCAAAGCAGGATCCGATAAAAAAAATAGCATCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTCTCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGCGCAAAAAAATTTTGCCAACGCATATAAGTTTATTTAGGCGTACTTTTAGTAATGACATCGTTTTCGAAATTATGAGCAAAATTTTCGTTTTTTTWTAAGTTTCCGACTGTGAGCTTAGCAATATTTGTAGTACGGTAGAGAAGAAAATAAATTTTTTTTAAACAAAAAACAACGAATTGGAATGAACAATGAGCGTTCGGTGTGTAAAACCGCTATGTAACAATGCAGAAAAGTTCTGAAACGTCGGGTTCTGAATCATCGAGTTTTGAAATGTTGAGTTCTGCAACGTCGGGGGCTTATACGTCCAGGATCCGATTTTCAACAGGCCTCTAAGAGCTTCCGAAAGCCTTCACCAGAGAAAGAAAAAAGTGAAAATGATAAAATTAGTGTTTATCGGAGCTTTTATACTCATTCTAATTTCACACTTTTGTTTCTCTGCGTCTCTCTTCTCTCTCTCTCGTTGCTAAGCGACGAGCTCGTTGTTGGCACTATAGGTTAACTAATTGCAGACTCTTGGGACTTAATCAGGAAAAATTTCTGCCGAAAAGAAGTCGTCTGAAAAACAAAATCGTATAGTTGGGGCTTTTGAAGTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>349 338 151 74 63 25</canonical_bands>
                <polymorphic_bands>412 338 151 74 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTTCAATAAAAACGATGTC</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTACATAGCGGTTTTACAC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AAAATTTCAATAAAAACGATGTCTAAAAGTGCGCAAAAAAATTTTGCCAACGCATATAAGTTTATTTAGGCGTACTTTTAGTAATGACATCGTTTTCGAAATTATGAGCAAAATTTTCGTTTTTTTTTAAGTTTCCGACTGTGAGCTTAGCAATATTTGTAGTACGGTAGAGAAGAAAATAAATTTTTTTTAAACAAAAAACAACGAATTGGAATGAACAATGAGCGTTCGGTGTGTAAAACCGCTATGTAACAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAATTTCAATAAAAACGATGTCTAAAAGTGCGCAAAAAAATTTTGCCAACGCATATAAGTTTATTTAGGCGTACTTTTAGTAATGACATCGTTTTCGAAATTATGAGCAAAATTTTCGTTTTTTTWTAAGTTTCCGACTGTGAGCTTAGCAATATTTGTAGTACGGTAGAGAAGAAAATAAATTTTTTTTAAACAAAAAACAACGAATTGGAATGAACAATGAGCGTTCGGTGTGTAAAACCGCTATGTAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34830</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>9431</contig_pos>
        <strand></strand>
        <context>aaacgtcggg[T/C]tytgaatcat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGTGTGTAAAACCGCTATGTAACAATGCAGAAAAGTTCTGAAACGTCGGG</left_flank>
        <right_flank>TCTGAATCATCGAGTTTTGAAATGTTGAGTTCTGCAACGTCGGGGGCTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCGTATAGTTGGCTCTTGTTTTTCAAATGATCACTAGAATTGCTAGAAGGAGCATTCTGTTTGGATAGATAGGGAACATTTCTATGATGGAACGATTCATCATGTCTTCATAACCTCAAAGCAGGATCCGATAAAAAAAATAGCATCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTCTCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGCGCAAAAAAATTTTGCCAACGCATATAAGTTTATTTAGGCGTACTTTTAGTAATGACATCGTTTTCGAAATTATGAGCAAAATTTTCGTTTTTTTTTAAGTTTCCGACTGTGAGCTTAGCAATATTTGTAGTACGGTAGAGAAGAAAATAAATTTTTTTTAAACAAAAAACAACGAATTGGAATGAACAATGAGCGTTCGGTGTGTAAAACCGCTATGTAACAATGCAGAAAAGTTCTGAAACGTCGGGTTCTGAATCATCGAGTTTTGAAATGTTGAGTTCTGCAACGTCGGGGGCTTATACGTCCAGGATCCGATTTTCAACAGGCCTCTAAGAGCTTCCGAAAGCCTTCACCAGAGAAAGAAAAAAGTGAAAATGATAAAATTAGTGTTTATCGGAGCTTTTATACTCATTCTAATTTCACACTTTTGTTTCTCTGCGTCTCTCTTCTCTCTCTCTCGTTGCTAAGCGACGAGCTCGTTGTTGGCACTATAGGTTAACTAATTGCAGACTCTTGGGACTTAATCAGGAAAAATTTCTGCCGAAAAGAAGTCGTCTGAAAAACAAAATCGTATAGTTGGGGCTTTTGAAGTGATCACATGGAAGTTTTTTGAGCGAGTTTTCGTTTTGATGGACAGGGTACAATAGGATACGAGGGTCCGATGGTGAAAAATCCTTCATGAAATTAGGCGATTCTCAGGACAGAAAGCGGATTTTTATAAAAACAGCTGTTCGGCGCTCATAGGTGTT</canonical>
            <polymorphic>ATTCGTATAGTTGGCTCTTGTTTTTCAAATGATCACTAGAATTGCTAGAAGGAGCATTCTGTTTGGATAGATAGGGAACATTTCTATGATGGAACGATTCATCATGTCTTCATAACCTCAAAGCAGGATCCGATAAAAAAAATAGCATCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTCTCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGCGCAAAAAAATTTTGCCAACGCATATAAGTTTATTTAGGCGTACTTTTAGTAATGACATCGTTTTCGAAATTATGAGCAAAATTTTCGTTTTTTTTTAAGTTTCCGACTGTGAGCTTAGCAATATTTGTAGTACGGTAGAGAAGAAAATAAATTTTTTTTAAACAAAAAACAACGAATTGGAATGAACAATGAGCGTTCGGTGTGTAAAACCGCTATGTAACAATGCAGAAAAGTTCTGAAACGTCGGGYTCTGAATCATCGAGTTTTGAAATGTTGAGTTCTGCAACGTCGGGGGCTTATACGTCCAGGATCCGATTTTCAACAGGCCTCTAAGAGCTTCCGAAAGCCTTCACCAGAGAAAGAAAAAAGTGAAAATGATAAAATTAGTGTTTATCGGAGCTTTTATACTCATTCTAATTTCACACTTTTGTTTCTCTGCGTCTCTCTTCTCTCTCTCTCGTTGCTAAGCGACGAGCTCGTTGTTGGCACTATAGGTTAACTAATTGCAGACTCTTGGGACTTAATCAGGAAAAATTTCTGCCGAAAAGAAGTCGTCTGAAAAACAAAATCGTATAGTTGGGGCTTTTGAAGTGATCACATGGAAGTTTTTTGAGCGAGTTTTCGTTTTGATGGACAGGGTACAATAGGATACGAGGGTCCGATGGTGAAAAATCCTTCATGAAATTAGGCGATTCTCAGGACAGAAAGCGGATTTTTATAAAAACAGCTGTTCGGCGCTCATAGGTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACAACGAATTGGAATG</pcr_primer_p1>
		<pcr_primer_p2>TGAGTATAAAAGCTCCGATAAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAAACAACGAATTGGAATGAACAATGAGCGTTCGGTGTGTAAAACCGCTATGTAACAATGCAGAAAAGTTCTGAAACGTCGGGTTCTGAATCATCGAGTTTTGAAATGTTGAGTTCTGCAACGTCGGGGGCTTATACGTCCAGGATCCGATTTTCAACAGGCCTCTAAGAGCTTCCGAAAGCCTTCACCAGAGAAAGAAAAAAGTGAAAATGATAAAATTAGTGTTTATCGGAGCTTTTATACTCA</canonical_amplicon>
		<polymorphic_amplicon>AAAAACAACGAATTGGAATGAACAATGAGCGTTCGGTGTGTAAAACCGCTATGTAACAATGCAGAAAAGTTCTGAAACGTCGGGYTCTGAATCATCGAGTTTTGAAATGTTGAGTTCTGCAACGTCGGGGGCTTATACGTCCAGGATCCGATTTTCAACAGGCCTCTAAGAGCTTCCGAAAGCCTTCACCAGAGAAAGAAAAAAGTGAAAATGATAAAATTAGTGTTTATCGGAGCTTTTATACTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34831</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>9433</contig_pos>
        <strand></strand>
        <context>acgtcgggyt[C/T]tgaatcatcg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTGTAAAACCGCTATGTAACAATGCAGAAAAGTTCTGAAACGTCGGGTT</left_flank>
        <right_flank>TGAATCATCGAGTTTTGAAATGTTGAGTTCTGCAACGTCGGGGGCTTATA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGTATAGTTGGCTCTTGTTTTTCAAATGATCACTAGAATTGCTAGAAGGAGCATTCTGTTTGGATAGATAGGGAACATTTCTATGATGGAACGATTCATCATGTCTTCATAACCTCAAAGCAGGATCCGATAAAAAAAATAGCATCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTCTCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGCGCAAAAAAATTTTGCCAACGCATATAAGTTTATTTAGGCGTACTTTTAGTAATGACATCGTTTTCGAAATTATGAGCAAAATTTTCGTTTTTTTTTAAGTTTCCGACTGTGAGCTTAGCAATATTTGTAGTACGGTAGAGAAGAAAATAAATTTTTTTTAAACAAAAAACAACGAATTGGAATGAACAATGAGCGTTCGGTGTGTAAAACCGCTATGTAACAATGCAGAAAAGTTCTGAAACGTCGGGTTCTGAATCATCGAGTTTTGAAATGTTGAGTTCTGCAACGTCGGGGGCTTATACGTCCAGGATCCGATTTTCAACAGGCCTCTAAGAGCTTCCGAAAGCCTTCACCAGAGAAAGAAAAAAGTGAAAATGATAAAATTAGTGTTTATCGGAGCTTTTATACTCATTCTAATTTCACACTTTTGTTTCTCTGCGTCTCTCTTCTCTCTCTCTCGTTGCTAAGCGACGAGCTCGTTGTTGGCACTATAGGTTAACTAATTGCAGACTCTTGGGACTTAATCAGGAAAAATTTCTGCCGAAAAGAAGTCGTCTGAAAAACAAAATCGTATAGTTGGGGCTTTTGAAGTGATCACATGGAAGTTTTTTGAGCGAGTTTTCGTTTTGATGGACAGGGTACAATAGGATACGAGGGTCCGATGGTGAAAAATCCTTCATGAAATTAGGCGATTCTCAGGACAGAAAGCGGATTTTTATAAAAACAGCTGTTCGGCGCTCATAGGTGTTGG</canonical>
            <polymorphic>TCGTATAGTTGGCTCTTGTTTTTCAAATGATCACTAGAATTGCTAGAAGGAGCATTCTGTTTGGATAGATAGGGAACATTTCTATGATGGAACGATTCATCATGTCTTCATAACCTCAAAGCAGGATCCGATAAAAAAAATAGCATCTCTACATTGTCCTTTTTCTCGATAGTGGTAGGTTCACACTCCAAAATTCTCAAAAAATAGAAAACAATTGAAAATTTCAATAAAAACGATGTCTAAAAGTGCGCAAAAAAATTTTGCCAACGCATATAAGTTTATTTAGGCGTACTTTTAGTAATGACATCGTTTTCGAAATTATGAGCAAAATTTTCGTTTTTTTTTAAGTTTCCGACTGTGAGCTTAGCAATATTTGTAGTACGGTAGAGAAGAAAATAAATTTTTTTTAAACAAAAAACAACGAATTGGAATGAACAATGAGCGTTCGGTGTGTAAAACCGCTATGTAACAATGCAGAAAAGTTCTGAAACGTCGGGTTYTGAATCATCGAGTTTTGAAATGTTGAGTTCTGCAACGTCGGGGGCTTATACGTCCAGGATCCGATTTTCAACAGGCCTCTAAGAGCTTCCGAAAGCCTTCACCAGAGAAAGAAAAAAGTGAAAATGATAAAATTAGTGTTTATCGGAGCTTTTATACTCATTCTAATTTCACACTTTTGTTTCTCTGCGTCTCTCTTCTCTCTCTCTCGTTGCTAAGCGACGAGCTCGTTGTTGGCACTATAGGTTAACTAATTGCAGACTCTTGGGACTTAATCAGGAAAAATTTCTGCCGAAAAGAAGTCGTCTGAAAAACAAAATCGTATAGTTGGGGCTTTTGAAGTGATCACATGGAAGTTTTTTGAGCGAGTTTTCGTTTTGATGGACAGGGTACAATAGGATACGAGGGTCCGATGGTGAAAAATCCTTCATGAAATTAGGCGATTCTCAGGACAGAAAGCGGATTTTTATAAAAACAGCTGTTCGGCGCTCATAGGTGTTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>224 161 133 129 103 91 61 55 28 15</canonical_bands>
                <polymorphic_bands>224 161 133 129 103 91 76 55 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACAACGAATTGGAATG</pcr_primer_p1>
		<pcr_primer_p2>TGAGTATAAAAGCTCCGATAAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAAACAACGAATTGGAATGAACAATGAGCGTTCGGTGTGTAAAACCGCTATGTAACAATGCAGAAAAGTTCTGAAACGTCGGGTTCTGAATCATCGAGTTTTGAAATGTTGAGTTCTGCAACGTCGGGGGCTTATACGTCCAGGATCCGATTTTCAACAGGCCTCTAAGAGCTTCCGAAAGCCTTCACCAGAGAAAGAAAAAAGTGAAAATGATAAAATTAGTGTTTATCGGAGCTTTTATACTCA</canonical_amplicon>
		<polymorphic_amplicon>AAAAACAACGAATTGGAATGAACAATGAGCGTTCGGTGTGTAAAACCGCTATGTAACAATGCAGAAAAGTTCTGAAACGTCGGGTTYTGAATCATCGAGTTTTGAAATGTTGAGTTCTGCAACGTCGGGGGCTTATACGTCCAGGATCCGATTTTCAACAGGCCTCTAAGAGCTTCCGAAAGCCTTCACCAGAGAAAGAAAAAAGTGAAAATGATAAAATTAGTGTTTATCGGAGCTTTTATACTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34832</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>19545</contig_pos>
        <strand></strand>
        <context>tctaatagaa[A/T]gccatccgat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCAATAGTTGCAATACACAATAGTAAATACCGTAATCACTCTAATAGAA</left_flank>
        <right_flank>GCCATCCGATTTGTCAAATTTGAGCCAATGTATCTCATTTTTTGTGCAAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTGCTAGCAAGCATTCAAGGTTGTCTGTTGCTGTCCAAATATCCACACTTGCAAAATCTCACCTTCCGAACTCTGCGTGTCTAATTGATCGACTTCACGCCTTCAATAACCACTACTTCATTTTTCATTGTGTATTTTTTATCGCTTATATGTTTGTTCATTCGTTCCACTCTCCCACATGAGGTATTTTTTAAAATTTGGGGGGGGGGGGGGAGGTTTCAAATTTCTAACTGGATAATTTAGAAACTGAAAATATTGAATTAATTTACATTGAAAATTGAAAATACCAAATTATGAGCTTATCTATAAAAACGAGTTTAATCAACTTCTGCGACCTCAAAAAACCCCAAATTCACAAAAAACCCAATGTGTGCTCACTCTTAATTTTTTGTTTCTGATTATGATTCTAAATGTCCTCCATGATTCCTCGTTATTTGTAAATCCCACTTCCAATAGTTGCAATACACAATAGTAAATACCGTAATCACTCTAATAGAAAGCCATCCGATTTGTCAAATTTGAGCCAATGTATCTCATTTTTTGTGCAAGATATCAAAAAGTTATTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAGTTTTTTGATATCTTCCAAAAGAAATGAGATATATAGGGTTAAAATGGACGGTCCGCGTGGCGTTCTATTAGAGTGTTTACAGTAAGTTCAGTAGGTTTTTTATAAGCGTTCGCATATATTAACAGAACAGAGTCTTAAAAATGATTTTGAAGGGGTATCACAAATTCCAACAAAACACTATCTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTTTTAAAAGATATCAAAAAGTGGTTAACTAGTAAAATGTTTATCAGGATATCAGCAACATTTTACTAGTTAGCCACTTTTTGATATCTTTCACAGAAAATGAGATATATAGGCTCAAATTTGACAAATCGGATGGCTT</canonical>
            <polymorphic>CGTGCTAGCAAGCATTCAAGGTTGTCTGTTGCTGTCCAAATATCCACACTTGCAAAATCTCACCTTCCGAACTCTGCGTGTCTAATTGATCGACTTCACGCCTTCAATAACCACTACTTCATTTTTCATTGTGTATTTTTTATCGCTTATATGTTTGTTCATTCGTTCCACTCTCCCACATGAGGTATTTTTTAAAATTTGGGGGGGGGGGGGGAGGTTTCAAATTTCTAACTGGATAATTTAGAAACTGAAAATATTGAATTAATTTACATTGAAAATTGAAAATACCAAATTATGAGCTTATCTATAAAAACGAGTTTAATCAACTTCTGCGACCTCAAAAAACCCCAAATTCACAAAAAACCCAATGTGTGCTCACTCTTAATTTTTTGTTTCTGATTATGATTCTAAATGTCCTCCATGATTCCTCGTTATTTGTAAATCCCACTTCCAATAGTTGCAATACACAATAGTAAATACCGTAATCACTCTAATAGAAWGCCATCCGATTTGTCAAATTTGAGCCAATGTATCTCATTTTTTGTGCAAGATATCAAAAAGTTATTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAGTTTTTTGATATCTTCCAAAAGAAATGAGATATATAGGGTTAAAATGGACGGTCCGCGTGGCGTTCTATTAGAGTGTTTACAGTAAGTTCAGTAGGTTTTTTATAAGCGTTCGCATATATTAACAGAACAGAGTCTTAAAAATGATTTTGAAGGGGTATCACAAATTCCAACAAAACACTATCTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTTTTAAAAGATATCAAAAAGTGGTTAACTAGTAAAATGTTTATCAGGATATCAGCAACATTTTACTAGTTAGCCACTTTTTGATATCTTTCACAGAAAATGAGATATATAGGCTCAAATTTGACAAATCGGATGGCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>321 299 202 89 40 23 23 3</canonical_bands>
                <polymorphic_bands>321 299 225 89 40 23 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCAATAGTTGCAATACACAA</pcr_primer_p1>
		<pcr_primer_p2>ATATGCGAACGCTTATAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>TTCCAATAGTTGCAATACACAATAGTAAATACCGTAATCACTCTAATAGAAAGCCATCCGATTTGTCAAATTTGAGCCAATGTATCTCATTTTTTGTGCAAGATATCAAAAAGTTATTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAGTTTTTTGATATCTTCCAAAAGAAATGAGATATATAGGGTTAAAATGGACGGTCCGCGTGGCGTTCTATTAGAGTGTTTACAGTAAGTTCAGTAGGTTTTTTATAAGCGTTCGCATAT</canonical_amplicon>
		<polymorphic_amplicon>TTCCAATAGTTGCAATACACAATAGTAAATACCGTAATCACTCTAATAGAAWGCCATCCGATTTGTCAAATTTGAGCCAATGTATCTCATTTTTTGTGCAAGATATCAAAAAGTTATTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAGTTTTTTGATATCTTCCAAAAGAAATGAGATATATAGGGTTAAAATGGACGGTCCGCGTGGCGTTCTATTAGAGTGTTTACAGTAAGTTCAGTAGGTTTTTTATAAGCGTTCGCATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34833</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>19571</contig_pos>
        <strand></strand>
        <context>aaatttgagc[C/T]matgtatctc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATACCGTAATCACTCTAATAGAAAGCCATCCGATTTGTCAAATTTGAGC</left_flank>
        <right_flank>AATGTATCTCATTTTTTGTGCAAGATATCAAAAAGTTATTAACTAATAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTGCTGTCCAAATATCCACACTTGCAAAATCTCACCTTCCGAACTCTGCGTGTCTAATTGATCGACTTCACGCCTTCAATAACCACTACTTCATTTTTCATTGTGTATTTTTTATCGCTTATATGTTTGTTCATTCGTTCCACTCTCCCACATGAGGTATTTTTTAAAATTTGGGGGGGGGGGGGGAGGTTTCAAATTTCTAACTGGATAATTTAGAAACTGAAAATATTGAATTAATTTACATTGAAAATTGAAAATACCAAATTATGAGCTTATCTATAAAAACGAGTTTAATCAACTTCTGCGACCTCAAAAAACCCCAAATTCACAAAAAACCCAATGTGTGCTCACTCTTAATTTTTTGTTTCTGATTATGATTCTAAATGTCCTCCATGATTCCTCGTTATTTGTAAATCCCACTTCCAATAGTTGCAATACACAATAGTAAATACCGTAATCACTCTAATAGAAAGCCATCCGATTTGTCAAATTTGAGCCAATGTATCTCATTTTTTGTGCAAGATATCAAAAAGTTATTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAGTTTTTTGATATCTTCCAAAAGAAATGAGATATATAGGGTTAAAATGGACGGTCCGCGTGGCGTTCTATTAGAGTGTTTACAGTAAGTTCAGTAGGTTTTTTATAAGCGTTCGCATATATTAACAGAACAGAGTCTTAAAAATGATTTTGAAGGGGTATCACAAATTCCAACAAAACACTATCTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTTTTAAAAGATATCAAAAAGTGGTTAACTAGTAAAATGTTTATCAGGATATCAGCAACATTTTACTAGTTAGCCACTTTTTGATATCTTTCACAGAAAATGAGATATATAGGCTCAAATTTGACAAATCGGATGGCTTTCTATTAGAGTGATTACGGTATTTAC</canonical>
            <polymorphic>TGTTGCTGTCCAAATATCCACACTTGCAAAATCTCACCTTCCGAACTCTGCGTGTCTAATTGATCGACTTCACGCCTTCAATAACCACTACTTCATTTTTCATTGTGTATTTTTTATCGCTTATATGTTTGTTCATTCGTTCCACTCTCCCACATGAGGTATTTTTTAAAATTTGGGGGGGGGGGGGGAGGTTTCAAATTTCTAACTGGATAATTTAGAAACTGAAAATATTGAATTAATTTACATTGAAAATTGAAAATACCAAATTATGAGCTTATCTATAAAAACGAGTTTAATCAACTTCTGCGACCTCAAAAAACCCCAAATTCACAAAAAACCCAATGTGTGCTCACTCTTAATTTTTTGTTTCTGATTATGATTCTAAATGTCCTCCATGATTCCTCGTTATTTGTAAATCCCACTTCCAATAGTTGCAATACACAATAGTAAATACCGTAATCACTCTAATAGAAAGCCATCCGATTTGTCAAATTTGAGCYAATGTATCTCATTTTTTGTGCAAGATATCAAAAAGTTATTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAGTTTTTTGATATCTTCCAAAAGAAATGAGATATATAGGGTTAAAATGGACGGTCCGCGTGGCGTTCTATTAGAGTGTTTACAGTAAGTTCAGTAGGTTTTTTATAAGCGTTCGCATATATTAACAGAACAGAGTCTTAAAAATGATTTTGAAGGGGTATCACAAATTCCAACAAAACACTATCTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTTTTAAAAGATATCAAAAAGTGGTTAACTAGTAAAATGTTTATCAGGATATCAGCAACATTTTACTAGTTAGCCACTTTTTGATATCTTTCACAGAAAATGAGATATATAGGCTCAAATTTGACAAATCGGATGGCTTTCTATTAGAGTGATTACGGTATTTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>321 273 202 89 40 29 23 23</canonical_bands>
                <polymorphic_bands>344 273 202 89 40 29 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCAATAGTTGCAATACACAATA</pcr_primer_p1>
		<pcr_primer_p2>ATATGCGAACGCTTATAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>TCCAATAGTTGCAATACACAATAGTAAATACCGTAATCACTCTAATAGAAAGCCATCCGATTTGTCAAATTTGAGCCAATGTATCTCATTTTTTGTGCAAGATATCAAAAAGTTATTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAGTTTTTTGATATCTTCCAAAAGAAATGAGATATATAGGGTTAAAATGGACGGTCCGCGTGGCGTTCTATTAGAGTGTTTACAGTAAGTTCAGTAGGTTTTTTATAAGCGTTCGCATAT</canonical_amplicon>
		<polymorphic_amplicon>TCCAATAGTTGCAATACACAATAGTAAATACCGTAATCACTCTAATAGAAAGCCATCCGATTTGTCAAATTTGAGCYAATGTATCTCATTTTTTGTGCAAGATATCAAAAAGTTATTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAGTTTTTTGATATCTTCCAAAAGAAATGAGATATATAGGGTTAAAATGGACGGTCCGCGTGGCGTTCTATTAGAGTGTTTACAGTAAGTTCAGTAGGTTTTTTATAAGCGTTCGCATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34834</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>19572</contig_pos>
        <strand></strand>
        <context>aatttgagcy[A/C]atgtatctca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATACCGTAATCACTCTAATAGAAAGCCATCCGATTTGTCAAATTTGAGCC</left_flank>
        <right_flank>ATGTATCTCATTTTTTGTGCAAGATATCAAAAAGTTATTAACTAATAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGCTGTCCAAATATCCACACTTGCAAAATCTCACCTTCCGAACTCTGCGTGTCTAATTGATCGACTTCACGCCTTCAATAACCACTACTTCATTTTTCATTGTGTATTTTTTATCGCTTATATGTTTGTTCATTCGTTCCACTCTCCCACATGAGGTATTTTTTAAAATTTGGGGGGGGGGGGGGAGGTTTCAAATTTCTAACTGGATAATTTAGAAACTGAAAATATTGAATTAATTTACATTGAAAATTGAAAATACCAAATTATGAGCTTATCTATAAAAACGAGTTTAATCAACTTCTGCGACCTCAAAAAACCCCAAATTCACAAAAAACCCAATGTGTGCTCACTCTTAATTTTTTGTTTCTGATTATGATTCTAAATGTCCTCCATGATTCCTCGTTATTTGTAAATCCCACTTCCAATAGTTGCAATACACAATAGTAAATACCGTAATCACTCTAATAGAAAGCCATCCGATTTGTCAAATTTGAGCCAATGTATCTCATTTTTTGTGCAAGATATCAAAAAGTTATTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAGTTTTTTGATATCTTCCAAAAGAAATGAGATATATAGGGTTAAAATGGACGGTCCGCGTGGCGTTCTATTAGAGTGTTTACAGTAAGTTCAGTAGGTTTTTTATAAGCGTTCGCATATATTAACAGAACAGAGTCTTAAAAATGATTTTGAAGGGGTATCACAAATTCCAACAAAACACTATCTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTTTTAAAAGATATCAAAAAGTGGTTAACTAGTAAAATGTTTATCAGGATATCAGCAACATTTTACTAGTTAGCCACTTTTTGATATCTTTCACAGAAAATGAGATATATAGGCTCAAATTTGACAAATCGGATGGCTTTCTATTAGAGTGATTACGGTATTTACT</canonical>
            <polymorphic>GTTGCTGTCCAAATATCCACACTTGCAAAATCTCACCTTCCGAACTCTGCGTGTCTAATTGATCGACTTCACGCCTTCAATAACCACTACTTCATTTTTCATTGTGTATTTTTTATCGCTTATATGTTTGTTCATTCGTTCCACTCTCCCACATGAGGTATTTTTTAAAATTTGGGGGGGGGGGGGGAGGTTTCAAATTTCTAACTGGATAATTTAGAAACTGAAAATATTGAATTAATTTACATTGAAAATTGAAAATACCAAATTATGAGCTTATCTATAAAAACGAGTTTAATCAACTTCTGCGACCTCAAAAAACCCCAAATTCACAAAAAACCCAATGTGTGCTCACTCTTAATTTTTTGTTTCTGATTATGATTCTAAATGTCCTCCATGATTCCTCGTTATTTGTAAATCCCACTTCCAATAGTTGCAATACACAATAGTAAATACCGTAATCACTCTAATAGAAAGCCATCCGATTTGTCAAATTTGAGCCMATGTATCTCATTTTTTGTGCAAGATATCAAAAAGTTATTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAGTTTTTTGATATCTTCCAAAAGAAATGAGATATATAGGGTTAAAATGGACGGTCCGCGTGGCGTTCTATTAGAGTGTTTACAGTAAGTTCAGTAGGTTTTTTATAAGCGTTCGCATATATTAACAGAACAGAGTCTTAAAAATGATTTTGAAGGGGTATCACAAATTCCAACAAAACACTATCTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTTTTAAAAGATATCAAAAAGTGGTTAACTAGTAAAATGTTTATCAGGATATCAGCAACATTTTACTAGTTAGCCACTTTTTGATATCTTTCACAGAAAATGAGATATATAGGCTCAAATTTGACAAATCGGATGGCTTTCTATTAGAGTGATTACGGTATTTACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAATAGTTGCAATACACAATA</pcr_primer_p1>
		<pcr_primer_p2>ATATGCGAACGCTTATAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>TCCAATAGTTGCAATACACAATAGTAAATACCGTAATCACTCTAATAGAAAGCCATCCGATTTGTCAAATTTGAGCCAATGTATCTCATTTTTTGTGCAAGATATCAAAAAGTTATTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAGTTTTTTGATATCTTCCAAAAGAAATGAGATATATAGGGTTAAAATGGACGGTCCGCGTGGCGTTCTATTAGAGTGTTTACAGTAAGTTCAGTAGGTTTTTTATAAGCGTTCGCATAT</canonical_amplicon>
		<polymorphic_amplicon>TCCAATAGTTGCAATACACAATAGTAAATACCGTAATCACTCTAATAGAAAGCCATCCGATTTGTCAAATTTGAGCCMATGTATCTCATTTTTTGTGCAAGATATCAAAAAGTTATTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAGTTTTTTGATATCTTCCAAAAGAAATGAGATATATAGGGTTAAAATGGACGGTCCGCGTGGCGTTCTATTAGAGTGTTTACAGTAAGTTCAGTAGGTTTTTTATAAGCGTTCGCATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34835</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>19661</contig_pos>
        <strand></strand>
        <context>ttagttgaca[G/A]ttttttgata</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACA</left_flank>
        <right_flank>TTTTTTGATATCTTCCAAAAGAAATGAGATATATAGGGTTAAAATGGACG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCATTTTTCATTGTGTATTTTTTATCGCTTATATGTTTGTTCATTCGTTCCACTCTCCCACATGAGGTATTTTTTAAAATTTGGGGGGGGGGGGGGAGGTTTCAAATTTCTAACTGGATAATTTAGAAACTGAAAATATTGAATTAATTTACATTGAAAATTGAAAATACCAAATTATGAGCTTATCTATAAAAACGAGTTTAATCAACTTCTGCGACCTCAAAAAACCCCAAATTCACAAAAAACCCAATGTGTGCTCACTCTTAATTTTTTGTTTCTGATTATGATTCTAAATGTCCTCCATGATTCCTCGTTATTTGTAAATCCCACTTCCAATAGTTGCAATACACAATAGTAAATACCGTAATCACTCTAATAGAAAGCCATCCGATTTGTCAAATTTGAGCCAATGTATCTCATTTTTTGTGCAAGATATCAAAAAGTTATTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAGTTTTTTGATATCTTCCAAAAGAAATGAGATATATAGGGTTAAAATGGACGGTCCGCGTGGCGTTCTATTAGAGTGTTTACAGTAAGTTCAGTAGGTTTTTTATAAGCGTTCGCATATATTAACAGAACAGAGTCTTAAAAATGATTTTGAAGGGGTATCACAAATTCCAACAAAACACTATCTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTTTTAAAAGATATCAAAAAGTGGTTAACTAGTAAAATGTTTATCAGGATATCAGCAACATTTTACTAGTTAGCCACTTTTTGATATCTTTCACAGAAAATGAGATATATAGGCTCAAATTTGACAAATCGGATGGCTTTCTATTAGAGTGATTACGGTATTTACTATTGTCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATATTGGCCTTCGGACAGTTGTCCTGTCCTCTATCTCTNNNNNNNNNNNNNNN</canonical>
            <polymorphic>CTTCATTTTTCATTGTGTATTTTTTATCGCTTATATGTTTGTTCATTCGTTCCACTCTCCCACATGAGGTATTTTTTAAAATTTGGGGGGGGGGGGGGAGGTTTCAAATTTCTAACTGGATAATTTAGAAACTGAAAATATTGAATTAATTTACATTGAAAATTGAAAATACCAAATTATGAGCTTATCTATAAAAACGAGTTTAATCAACTTCTGCGACCTCAAAAAACCCCAAATTCACAAAAAACCCAATGTGTGCTCACTCTTAATTTTTTGTTTCTGATTATGATTCTAAATGTCCTCCATGATTCCTCGTTATTTGTAAATCCCACTTCCAATAGTTGCAATACACAATAGTAAATACCGTAATCACTCTAATAGAAAGCCATCCGATTTGTCAAATTTGAGCCAATGTATCTCATTTTTTGTGCAAGATATCAAAAAGTTATTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACARTTTTTTGATATCTTCCAAAAGAAATGAGATATATAGGGTTAAAATGGACGGTCCGCGTGGCGTTCTATTAGAGTGTTTACAGTAAGTTCAGTAGGTTTTTTATAAGCGTTCGCATATATTAACAGAACAGAGTCTTAAAAATGATTTTGAAGGGGTATCACAAATTCCAACAAAACACTATCTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTTTTAAAAGATATCAAAAAGTGGTTAACTAGTAAAATGTTTATCAGGATATCAGCAACATTTTACTAGTTAGCCACTTTTTGATATCTTTCACAGAAAATGAGATATATAGGCTCAAATTTGACAAATCGGATGGCTTTCTATTAGAGTGATTACGGTATTTACTATTGTCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATATTGGCCTTCGGACAGTTGTCCTGTCCTCTATCTCTNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>365 216 134 105 51 43 36 31 19</canonical_bands>
                <polymorphic_bands>365 216 185 105 43 36 31 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCAATAGTTGCAATACACAATA</pcr_primer_p1>
		<pcr_primer_p2>ATATGCGAACGCTTATAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>TCCAATAGTTGCAATACACAATAGTAAATACCGTAATCACTCTAATAGAAAGCCATCCGATTTGTCAAATTTGAGCCAATGTATCTCATTTTTTGTGCAAGATATCAAAAAGTTATTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAGTTTTTTGATATCTTCCAAAAGAAATGAGATATATAGGGTTAAAATGGACGGTCCGCGTGGCGTTCTATTAGAGTGTTTACAGTAAGTTCAGTAGGTTTTTTATAAGCGTTCGCATAT</canonical_amplicon>
		<polymorphic_amplicon>TCCAATAGTTGCAATACACAATAGTAAATACCGTAATCACTCTAATAGAAAGCCATCCGATTTGTCAAATTTGAGCCAATGTATCTCATTTTTTGTGCAAGATATCAAAAAGTTATTAACTAATAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACARTTTTTTGATATCTTCCAAAAGAAATGAGATATATAGGGTTAAAATGGACGGTCCGCGTGGCGTTCTATTAGAGTGTTTACAGTAAGTTCAGTAGGTTTTTTATAAGCGTTCGCATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34838</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>21234</contig_pos>
        <strand>+</strand>
        <context>AAGTGTAACC[A/G]TGTCTATSGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATTTACTACTTGGCACTTTGCCAGGCAACGCACACAAAAAGTGTAACC</left_flank>
        <right_flank>TGTCTATCGTCTAGATGTTGTAACGGTACCAGATAAGAGAGTACGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTTCCCACTTTTATAATTCCAACAATAGGTTCTAAAAATGGGCTTCCAAATTGTGATCATAGGAGAACAGTTGTCCTGAGTTGAGATTTTTTATAATTACTTTGATAGGGAACTCATGACACACTATTTTCTGTAGTTTTGAGCCTGATTGGACCATTTTCAGGCAGGCGAGTTACGCAACGATTTCACTAGAAAAGACACAACACTTTTGTTGCCGAAAATTGCCGAAATTTTTTTTTCGGCATTTGCCGAGTTGCCGAACATTGCCAAAAAGCGTTCGGCAATTTGCCGAGTTGCCGAATTGCCGGAATTCTTTTGTTGCCGCACAGGCCTATATCCGAAACTTTTTTGAAAGAAGTATCCATAACCTCAATTTTTTCATAATCCATTTTTTCGCAGTCATTTACTACTTGGCACTTTGCCAGGCAACGCACACAAAAAGTGTAACCTTGTCTATCGTCTAGATGTTGTAACGGTACCAGATAAGAGAGTACGAAAAAAAATAGATTAGAAAAATAGAGGGACAGGCGTATGCAACAATTTCAGAATCTCAGATTTTCTAAATCTGAAAATCTGAAAATCTTGGAAGATCAGAATCATAGAACCTTCGAGTTTTACATAGAACCCTTTTAAATGAAGGTAGGAGTCAGCAGAAACCACTCGCAAAGATCGAAAGAGCATTGTCGAAAACCCTTAAATCCGTTTTCAAAGTCTGCTTACGAGACTTTTGAATTGCTGAAATTACCAAAAATCCCATTTTCAGTGTAAAATCGCAATTTCTAAATTTGATTTTCTCCACTTCTAGGAGGTTTTAGAACATGAAATATATTTTATTAGGCTTGAAATTATGTGGAATTTCATATTTCAGACATTTTCTAACGAAATTTTCAAACTCGGAAAAGAGAATTGTCTTGGGCCCACCGAAAATCTGGGCAATTTTTGATTTTTTG</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTTCCCACTTTTATAATTCCAACAATAGGTTCTAAAAATGGGCTTCCAAATTGTGATCATAGGAGAACAGTTGTCCTGAGTTGAGATTTTTTATAATTACTTTGATAGGGAACTCATGACACACTATTTTCTGTAGTTTTGAGCCTGATTGGACCATTTTCAGGCAGGCGAGTTACGCAACGATTTCACTAGAAAAGACACAACACTTTTGTTGCCGAAAATTGCCGAAATTTTTTTTTCGGCATTTGCCGAGTTGCCGAACATTGCCAAAAAGCGTTCGGCAATTTGCCGAGTTGCCGAATTGCCGGAATTCTTTTGTTGCCGCACAGGCCTATATCCGAAACTTTTTTGAAAGAAGTATCCATAACCTCAATTTTTTCATAATCCATTTTTTCGCAGTCATTTACTACTTGGCACTTTGCCAGGCAACGCACACAAAAAGTGTAACCRTGTCTATCGTCTAGATGTTGTAACGGTACCAGATAAGAGAGTACGAAAAAAAATAGATTAGAAAAATAGAGGGACAGGCGTATGCAACAATTTCAGAATCTCAGATTTTCTAAATCTGAAAATCTGAAAATCTTGGAAGATCAGAATCATAGAACCTTCGAGTTTTACATAGAACCCTTTTAAATGAAGGTAGGAGTCAGCAGAAACCACTCGCAAAGATCGAAAGAGCATTGTCGAAAACCCTTAAATCCGTTTTCAAAGTCTGCTTACGAGACTTTTGAATTGCTGAAATTACCAAAAATCCCATTTTCAGTGTAAAATCGCAATTTCTAAATTTGATTTTCTCCACTTCTAGGAGGTTTTAGAACATGAAATATATTTTATTAGGCTTGAAATTATGTGGAATTTCATATTTCAGACATTTTCTAACGAAATTTTCAAACTCGGAAAAGAGAATTGTCTTGGGCCCACCGAAAATCTGGGCAATTTTTGATTTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGAAGTATCCATAACCTCAA</pcr_primer_p1>
		<pcr_primer_p2>GATTCTGATCTTCCAAGATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAAGAAGTATCCATAACCTCAATTTTTTCATAATCCATTTTTTCGCAGTCATTTACTACTTGGCACTTTGCCAGGCAACGCACACAAAAAGTGTAACCTTGTCTATCGTCTAGATGTTGTAACGGTACCAGATAAGAGAGTACGAAAAAAAATAGATTAGAAAAATAGAGGGACAGGCGTATGCAACAATTTCAGAATCTCAGATTTTCTAAATCTGAAAATCTGAAAATCTTGGAAGATCAGAATC</canonical_amplicon>
		<polymorphic_amplicon>GAAAGAAGTATCCATAACCTCAATTTTTTCATAATCCATTTTTTCGCAGTCATTTACTACTTGGCACTTTGCCAGGCAACGCACACAAAAAGTGTAACCRTGTCTATCGTCTAGATGTTGTAACGGTACCAGATAAGAGAGTACGAAAAAAAATAGATTAGAAAAATAGAGGGACAGGCGTATGCAACAATTTCAGAATCTCAGATTTTCTAAATCTGAAAATCTGAAAATCTTGGAAGATCAGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34839</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>21242</contig_pos>
        <strand>+</strand>
        <context>CCRTGTCTAT[C/G]GTCTAGAYGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TACTTGGCACTTTGCCAGGCAACGCACACAAAAAGTGTAACCTTGTCTAT</left_flank>
        <right_flank>GTCTAGATGTTGTAACGGTACCAGATAAGAGAGTACGAAAAAAAATAGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTTCCCACTTTTATAATTCCAACAATAGGTTCTAAAAATGGGCTTCCAAATTGTGATCATAGGAGAACAGTTGTCCTGAGTTGAGATTTTTTATAATTACTTTGATAGGGAACTCATGACACACTATTTTCTGTAGTTTTGAGCCTGATTGGACCATTTTCAGGCAGGCGAGTTACGCAACGATTTCACTAGAAAAGACACAACACTTTTGTTGCCGAAAATTGCCGAAATTTTTTTTTCGGCATTTGCCGAGTTGCCGAACATTGCCAAAAAGCGTTCGGCAATTTGCCGAGTTGCCGAATTGCCGGAATTCTTTTGTTGCCGCACAGGCCTATATCCGAAACTTTTTTGAAAGAAGTATCCATAACCTCAATTTTTTCATAATCCATTTTTTCGCAGTCATTTACTACTTGGCACTTTGCCAGGCAACGCACACAAAAAGTGTAACCTTGTCTATCGTCTAGATGTTGTAACGGTACCAGATAAGAGAGTACGAAAAAAAATAGATTAGAAAAATAGAGGGACAGGCGTATGCAACAATTTCAGAATCTCAGATTTTCTAAATCTGAAAATCTGAAAATCTTGGAAGATCAGAATCATAGAACCTTCGAGTTTTACATAGAACCCTTTTAAATGAAGGTAGGAGTCAGCAGAAACCACTCGCAAAGATCGAAAGAGCATTGTCGAAAACCCTTAAATCCGTTTTCAAAGTCTGCTTACGAGACTTTTGAATTGCTGAAATTACCAAAAATCCCATTTTCAGTGTAAAATCGCAATTTCTAAATTTGATTTTCTCCACTTCTAGGAGGTTTTAGAACATGAAATATATTTTATTAGGCTTGAAATTATGTGGAATTTCATATTTCAGACATTTTCTAACGAAATTTTCAAACTCGGAAAAGAGAATTGTCTTGGGCCCACCGAAAATCTGGGCAATTTTTGATTTTTTGGTGCTGAA</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTTCCCACTTTTATAATTCCAACAATAGGTTCTAAAAATGGGCTTCCAAATTGTGATCATAGGAGAACAGTTGTCCTGAGTTGAGATTTTTTATAATTACTTTGATAGGGAACTCATGACACACTATTTTCTGTAGTTTTGAGCCTGATTGGACCATTTTCAGGCAGGCGAGTTACGCAACGATTTCACTAGAAAAGACACAACACTTTTGTTGCCGAAAATTGCCGAAATTTTTTTTTCGGCATTTGCCGAGTTGCCGAACATTGCCAAAAAGCGTTCGGCAATTTGCCGAGTTGCCGAATTGCCGGAATTCTTTTGTTGCCGCACAGGCCTATATCCGAAACTTTTTTGAAAGAAGTATCCATAACCTCAATTTTTTCATAATCCATTTTTTCGCAGTCATTTACTACTTGGCACTTTGCCAGGCAACGCACACAAAAAGTGTAACCTTGTCTATSGTCTAGATGTTGTAACGGTACCAGATAAGAGAGTACGAAAAAAAATAGATTAGAAAAATAGAGGGACAGGCGTATGCAACAATTTCAGAATCTCAGATTTTCTAAATCTGAAAATCTGAAAATCTTGGAAGATCAGAATCATAGAACCTTCGAGTTTTACATAGAACCCTTTTAAATGAAGGTAGGAGTCAGCAGAAACCACTCGCAAAGATCGAAAGAGCATTGTCGAAAACCCTTAAATCCGTTTTCAAAGTCTGCTTACGAGACTTTTGAATTGCTGAAATTACCAAAAATCCCATTTTCAGTGTAAAATCGCAATTTCTAAATTTGATTTTCTCCACTTCTAGGAGGTTTTAGAACATGAAATATATTTTATTAGGCTTGAAATTATGTGGAATTTCATATTTCAGACATTTTCTAACGAAATTTTCAAACTCGGAAAAGAGAATTGTCTTGGGCCCACCGAAAATCTGGGCAATTTTTGATTTTTTGGTGCTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGAAGTATCCATAACCTCAA</pcr_primer_p1>
		<pcr_primer_p2>GATTCTGATCTTCCAAGATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAAGAAGTATCCATAACCTCAATTTTTTCATAATCCATTTTTTCGCAGTCATTTACTACTTGGCACTTTGCCAGGCAACGCACACAAAAAGTGTAACCTTGTCTATCGTCTAGATGTTGTAACGGTACCAGATAAGAGAGTACGAAAAAAAATAGATTAGAAAAATAGAGGGACAGGCGTATGCAACAATTTCAGAATCTCAGATTTTCTAAATCTGAAAATCTGAAAATCTTGGAAGATCAGAATC</canonical_amplicon>
		<polymorphic_amplicon>GAAAGAAGTATCCATAACCTCAATTTTTTCATAATCCATTTTTTCGCAGTCATTTACTACTTGGCACTTTGCCAGGCAACGCACACAAAAAGTGTAACCTTGTCTATSGTCTAGATGTTGTAACGGTACCAGATAAGAGAGTACGAAAAAAAATAGATTAGAAAAATAGAGGGACAGGCGTATGCAACAATTTCAGAATCTCAGATTTTCTAAATCTGAAAATCTGAAAATCTTGGAAGATCAGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34840</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>21250</contig_pos>
        <strand>+</strand>
        <context>ATSGTCTAGA[C/T]GTTGTAACGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTTTGCCAGGCAACGCACACAAAAAGTGTAACCTTGTCTATCGTCTAGA</left_flank>
        <right_flank>GTTGTAACGGTACCAGATAAGAGAGTACGAAAAAAAATAGATTAGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTTCCCACTTTTATAATTCCAACAATAGGTTCTAAAAATGGGCTTCCAAATTGTGATCATAGGAGAACAGTTGTCCTGAGTTGAGATTTTTTATAATTACTTTGATAGGGAACTCATGACACACTATTTTCTGTAGTTTTGAGCCTGATTGGACCATTTTCAGGCAGGCGAGTTACGCAACGATTTCACTAGAAAAGACACAACACTTTTGTTGCCGAAAATTGCCGAAATTTTTTTTTCGGCATTTGCCGAGTTGCCGAACATTGCCAAAAAGCGTTCGGCAATTTGCCGAGTTGCCGAATTGCCGGAATTCTTTTGTTGCCGCACAGGCCTATATCCGAAACTTTTTTGAAAGAAGTATCCATAACCTCAATTTTTTCATAATCCATTTTTTCGCAGTCATTTACTACTTGGCACTTTGCCAGGCAACGCACACAAAAAGTGTAACCTTGTCTATCGTCTAGATGTTGTAACGGTACCAGATAAGAGAGTACGAAAAAAAATAGATTAGAAAAATAGAGGGACAGGCGTATGCAACAATTTCAGAATCTCAGATTTTCTAAATCTGAAAATCTGAAAATCTTGGAAGATCAGAATCATAGAACCTTCGAGTTTTACATAGAACCCTTTTAAATGAAGGTAGGAGTCAGCAGAAACCACTCGCAAAGATCGAAAGAGCATTGTCGAAAACCCTTAAATCCGTTTTCAAAGTCTGCTTACGAGACTTTTGAATTGCTGAAATTACCAAAAATCCCATTTTCAGTGTAAAATCGCAATTTCTAAATTTGATTTTCTCCACTTCTAGGAGGTTTTAGAACATGAAATATATTTTATTAGGCTTGAAATTATGTGGAATTTCATATTTCAGACATTTTCTAACGAAATTTTCAAACTCGGAAAAGAGAATTGTCTTGGGCCCACCGAAAATCTGGGCAATTTTTGATTTTTTGGTGCTGAAGCTGAAAT</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGTTCCCACTTTTATAATTCCAACAATAGGTTCTAAAAATGGGCTTCCAAATTGTGATCATAGGAGAACAGTTGTCCTGAGTTGAGATTTTTTATAATTACTTTGATAGGGAACTCATGACACACTATTTTCTGTAGTTTTGAGCCTGATTGGACCATTTTCAGGCAGGCGAGTTACGCAACGATTTCACTAGAAAAGACACAACACTTTTGTTGCCGAAAATTGCCGAAATTTTTTTTTCGGCATTTGCCGAGTTGCCGAACATTGCCAAAAAGCGTTCGGCAATTTGCCGAGTTGCCGAATTGCCGGAATTCTTTTGTTGCCGCACAGGCCTATATCCGAAACTTTTTTGAAAGAAGTATCCATAACCTCAATTTTTTCATAATCCATTTTTTCGCAGTCATTTACTACTTGGCACTTTGCCAGGCAACGCACACAAAAAGTGTAACCTTGTCTATCGTCTAGAYGTTGTAACGGTACCAGATAAGAGAGTACGAAAAAAAATAGATTAGAAAAATAGAGGGACAGGCGTATGCAACAATTTCAGAATCTCAGATTTTCTAAATCTGAAAATCTGAAAATCTTGGAAGATCAGAATCATAGAACCTTCGAGTTTTACATAGAACCCTTTTAAATGAAGGTAGGAGTCAGCAGAAACCACTCGCAAAGATCGAAAGAGCATTGTCGAAAACCCTTAAATCCGTTTTCAAAGTCTGCTTACGAGACTTTTGAATTGCTGAAATTACCAAAAATCCCATTTTCAGTGTAAAATCGCAATTTCTAAATTTGATTTTCTCCACTTCTAGGAGGTTTTAGAACATGAAATATATTTTATTAGGCTTGAAATTATGTGGAATTTCATATTTCAGACATTTTCTAACGAAATTTTCAAACTCGGAAAAGAGAATTGTCTTGGGCCCACCGAAAATCTGGGCAATTTTTGATTTTTTGGTGCTGAAGCTGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGAAGTATCCATAACCTCAA</pcr_primer_p1>
		<pcr_primer_p2>GATTCTGATCTTCCAAGATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAAGAAGTATCCATAACCTCAATTTTTTCATAATCCATTTTTTCGCAGTCATTTACTACTTGGCACTTTGCCAGGCAACGCACACAAAAAGTGTAACCTTGTCTATCGTCTAGATGTTGTAACGGTACCAGATAAGAGAGTACGAAAAAAAATAGATTAGAAAAATAGAGGGACAGGCGTATGCAACAATTTCAGAATCTCAGATTTTCTAAATCTGAAAATCTGAAAATCTTGGAAGATCAGAATC</canonical_amplicon>
		<polymorphic_amplicon>GAAAGAAGTATCCATAACCTCAATTTTTTCATAATCCATTTTTTCGCAGTCATTTACTACTTGGCACTTTGCCAGGCAACGCACACAAAAAGTGTAACCTTGTCTATCGTCTAGAYGTTGTAACGGTACCAGATAAGAGAGTACGAAAAAAAATAGATTAGAAAAATAGAGGGACAGGCGTATGCAACAATTTCAGAATCTCAGATTTTCTAAATCTGAAAATCTGAAAATCTTGGAAGATCAGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34841</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>21328</contig_pos>
        <strand>+</strand>
        <context>GCAACAATTT[C/G]AGAATCTCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGAAAAAAAATAGATTAGAAAAATAGAGGGACAGGCGTATGCAACAATTT</left_flank>
        <right_flank>AGAATCTCAGATTTTCTAAATCTGAAAATCTGAAAATCTTGGAAGATCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAAATTGTGATCATAGGAGAACAGTTGTCCTGAGTTGAGATTTTTTATAATTACTTTGATAGGGAACTCATGACACACTATTTTCTGTAGTTTTGAGCCTGATTGGACCATTTTCAGGCAGGCGAGTTACGCAACGATTTCACTAGAAAAGACACAACACTTTTGTTGCCGAAAATTGCCGAAATTTTTTTTTCGGCATTTGCCGAGTTGCCGAACATTGCCAAAAAGCGTTCGGCAATTTGCCGAGTTGCCGAATTGCCGGAATTCTTTTGTTGCCGCACAGGCCTATATCCGAAACTTTTTTGAAAGAAGTATCCATAACCTCAATTTTTTCATAATCCATTTTTTCGCAGTCATTTACTACTTGGCACTTTGCCAGGCAACGCACACAAAAAGTGTAACCTTGTCTATCGTCTAGATGTTGTAACGGTACCAGATAAGAGAGTACGAAAAAAAATAGATTAGAAAAATAGAGGGACAGGCGTATGCAACAATTTCAGAATCTCAGATTTTCTAAATCTGAAAATCTGAAAATCTTGGAAGATCAGAATCATAGAACCTTCGAGTTTTACATAGAACCCTTTTAAATGAAGGTAGGAGTCAGCAGAAACCACTCGCAAAGATCGAAAGAGCATTGTCGAAAACCCTTAAATCCGTTTTCAAAGTCTGCTTACGAGACTTTTGAATTGCTGAAATTACCAAAAATCCCATTTTCAGTGTAAAATCGCAATTTCTAAATTTGATTTTCTCCACTTCTAGGAGGTTTTAGAACATGAAATATATTTTATTAGGCTTGAAATTATGTGGAATTTCATATTTCAGACATTTTCTAACGAAATTTTCAAACTCGGAAAAGAGAATTGTCTTGGGCCCACCGAAAATCTGGGCAATTTTTGATTTTTTGGTGCTGAAGCTGAAATTTCAGCACTTCGAAGGTCTCGTAAGCAGACTTTGAAAACGCATTCAGAGGTTTTCAACCATGCTCTTTCGATCTATGC</canonical>
            <polymorphic>TCCAAATTGTGATCATAGGAGAACAGTTGTCCTGAGTTGAGATTTTTTATAATTACTTTGATAGGGAACTCATGACACACTATTTTCTGTAGTTTTGAGCCTGATTGGACCATTTTCAGGCAGGCGAGTTACGCAACGATTTCACTAGAAAAGACACAACACTTTTGTTGCCGAAAATTGCCGAAATTTTTTTTTCGGCATTTGCCGAGTTGCCGAACATTGCCAAAAAGCGTTCGGCAATTTGCCGAGTTGCCGAATTGCCGGAATTCTTTTGTTGCCGCACAGGCCTATATCCGAAACTTTTTTGAAAGAAGTATCCATAACCTCAATTTTTTCATAATCCATTTTTTCGCAGTCATTTACTACTTGGCACTTTGCCAGGCAACGCACACAAAAAGTGTAACCTTGTCTATCGTCTAGATGTTGTAACGGTACCAGATAAGAGAGTACGAAAAAAAATAGATTAGAAAAATAGAGGGACAGGCGTATGCAACAATTTSAGAATCTCAGATTTTCTAAATCTGAAAATCTGAAAATCTTGGAAGATCAGAATCATAGAACCTTCGAGTTTTACATAGAACCCTTTTAAATGAAGGTAGGAGTCAGCAGAAACCACTCGCAAAGATCGAAAGAGCATTGTCGAAAACCCTTAAATCCGTTTTCAAAGTCTGCTTACGAGACTTTTGAATTGCTGAAATTACCAAAAATCCCATTTTCAGTGTAAAATCGCAATTTCTAAATTTGATTTTCTCCACTTCTAGGAGGTTTTAGAACATGAAATATATTTTATTAGGCTTGAAATTATGTGGAATTTCATATTTCAGACATTTTCTAACGAAATTTTCAAACTCGGAAAAGAGAATTGTCTTGGGCCCACCGAAAATCTGGGCAATTTTTGATTTTTTGGTGCTGAAGCTGAAATTTCAGCACTTCGAAGGTCTCGTAAGCAGACTTTGAAAACGCATTCAGAGGTTTTCAACCATGCTCTTTCGATCTATGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>295 274 206 116 32 29 18 14 8 8</canonical_bands>
                <polymorphic_bands>295 274 214 116 32 29 18 14 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAGAAGTATCCATAACCTCAA</pcr_primer_p1>
		<pcr_primer_p2>GATTCTGATCTTCCAAGATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAAGAAGTATCCATAACCTCAATTTTTTCATAATCCATTTTTTCGCAGTCATTTACTACTTGGCACTTTGCCAGGCAACGCACACAAAAAGTGTAACCTTGTCTATCGTCTAGATGTTGTAACGGTACCAGATAAGAGAGTACGAAAAAAAATAGATTAGAAAAATAGAGGGACAGGCGTATGCAACAATTTCAGAATCTCAGATTTTCTAAATCTGAAAATCTGAAAATCTTGGAAGATCAGAATC</canonical_amplicon>
		<polymorphic_amplicon>GAAAGAAGTATCCATAACCTCAATTTTTTCATAATCCATTTTTTCGCAGTCATTTACTACTTGGCACTTTGCCAGGCAACGCACACAAAAAGTGTAACCTTGTCTATCGTCTAGATGTTGTAACGGTACCAGATAAGAGAGTACGAAAAAAAATAGATTAGAAAAATAGAGGGACAGGCGTATGCAACAATTTSAGAATCTCAGATTTTCTAAATCTGAAAATCTGAAAATCTTGGAAGATCAGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34842</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>52640</contig_pos>
        <strand></strand>
        <context>aactaatcgg[A/G]aacttgacag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCAATTTAGGTCTGTTTTACACCTTTCAAAATTTTCAAACTAATCGG</left_flank>
        <right_flank>AACTTGACAGACGAGCTTCAGACTCCGGAAGATGATCAAAATAGCTGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCCAAGCGAGGAACTGGATTTGTATGCAGCGATGAGTAGTTCATCTTGGTTTCCGGACGCTAGATCGATGATTTCCGGCAGGAATAGTAGGAAACGGTCTTTGAATTGCTGGAAATTATGAGGATTAGTATTTTAATGGCAATTTCGGATAGTTTTTACAGTGATTTCCTTTTATTTGCGGCCATTTTGACCATTTTCAGAAGTCTAGAGCTCGGCGGTCAAGTTTTCGATCACTTTGAACATTTTGGAGAGAGTAAAACAGACCTAAATTGAAAATTTAGCCTATTCAAATCTTTTGAAAATTCTATTTCTTCAGCTATTTGCCTGCTTCGGAAAACCCCTTGTTTTTGGCCCTTTTTTGAAATCAAAACGTAAAATACAAGTTTCTTGCAGAAATCGGCAAATAGCTGAAGAAATAGAACTTTTCGAAAATCCTGAAATTGCTAAATTTTCAATTTAGGTCTGTTTTACACCTTTCAAAATTTTCAAACTAATCGGAAACTTGACAGACGAGCTTCAGACTCCGGAAGATGATCAAAATAGCTGAAAATCCACGGAAATTCCTTTTTTAAAATATTTTTTTGACGGGTACTGTAGCTTCAGGCGCCTAAAAAACAAAAACCCACATTAAAATTGATGGCATGGTCGTTGCATAGCACTCTGTCAATTATACTACCGGCGAAAATGGATAAATTGAGCTTTTCGCATAAAATGAGCAATCCGTCCTTGTCCAATAATCCATTACGTTCAGAGTTGCATGAGTTGAATAACTGCAAAACACGGGATTACGGTCATCTGGTTGAAATTCTTTTTCTTCAAAGACTTTTAGTGCGTTTTTTGTCAAATCTTCTCATGTAAAATCTGATGTTTTAGTTGAAAATTCAAAAATCAATACACTCACCCTTTTAAGTTCCTTTACATGTACGTTTTCATCGCTCAAACCTTCATCTTGTTGAGCCATTGACTGCATTCAAATCATTTCGAGAATATTCCTGTAAA</canonical>
            <polymorphic>TGCCAAGCGAGGAACTGGATTTGTATGCAGCGATGAGTAGTTCATCTTGGTTTCCGGACGCTAGATCGATGATTTCCGGCAGGAATAGTAGGAAACGGTCTTTGAATTGCTGGAAATTATGAGGATTAGTATTTTAATGGCAATTTCGGATAGTTTTTACAGTGATTTCCTTTTATTTGCGGCCATTTTGACCATTTTCAGAAGTCTAGAGCTCGGCGGTCAAGTTTTCGATCACTTTGAACATTTTGGAGAGAGTAAAACAGACCTAAATTGAAAATTTAGCCTATTCAAATCTTTTGAAAATTCTATTTCTTCAGCTATTTGCCTGCTTCGGAAAACCCCTTGTTTTTGGCCCTTTTTTGAAATCAAAACGTAAAATACAAGTTTCTTGCAGAAATCGGCAAATAGCTGAAGAAATAGAACTTTTCGAAAATCCTGAAATTGCTAAATTTTCAATTTAGGTCTGTTTTACACCTTTCAAAATTTTCAAACTAATCGGRAACTTGACAGACGAGCTTCAGACTCCGGAAGATGATCAAAATAGCTGAAAATCCACGGAAATTCCTTTTTTAAAATATTTTTTTGACGGGTACTGTAGCTTCAGGCGCCTAAAAAACAAAAACCCACATTAAAATTGATGGCATGGTCGTTGCATAGCACTCTGTCAATTATACTACCGGCGAAAATGGATAAATTGAGCTTTTCGCATAAAATGAGCAATCCGTCCTTGTCCAATAATCCATTACGTTCAGAGTTGCATGAGTTGAATAACTGCAAAACACGGGATTACGGTCATCTGGTTGAAATTCTTTTTCTTCAAAGACTTTTAGTGCGTTTTTTGTCAAATCTTCTCATGTAAAATCTGATGTTTTAGTTGAAAATTCAAAAATCAATACACTCACCCTTTTAAGTTCCTTTACATGTACGTTTTCATCGCTCAAACCTTCATCTTGTTGAGCCATTGACTGCATTCAAATCATTTCGAGAATATTCCTGTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>231 165 148 136 133 113 52 22</canonical_bands>
                <polymorphic_bands>231 187 148 136 133 113 52</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCGGATAGTTTTTACAGTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTAATGTGGGTTTTTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>491</pcr_amplicon_size>
		<canonical_amplicon>ATTTCGGATAGTTTTTACAGTGATTTCCTTTTATTTGCGGCCATTTTGACCATTTTCAGAAGTCTAGAGCTCGGCGGTCAAGTTTTCGATCACTTTGAACATTTTGGAGAGAGTAAAACAGACCTAAATTGAAAATTTAGCCTATTCAAATCTTTTGAAAATTCTATTTCTTCAGCTATTTGCCTGCTTCGGAAAACCCCTTGTTTTTGGCCCTTTTTTGAAATCAAAACGTAAAATACAAGTTTCTTGCAGAAATCGGCAAATAGCTGAAGAAATAGAACTTTTCGAAAATCCTGAAATTGCTAAATTTTCAATTTAGGTCTGTTTTACACCTTTCAAAATTTTCAAACTAATCGGAAACTTGACAGACGAGCTTCAGACTCCGGAAGATGATCAAAATAGCTGAAAATCCACGGAAATTCCTTTTTTAAAATATTTTTTTGACGGGTACTGTAGCTTCAGGCGCCTAAAAAACAAAAACCCACATTAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTCGGATAGTTTTTACAGTGATTTCCTTTTATTTGCGGCCATTTTGACCATTTTCAGAAGTCTAGAGCTCGGCGGTCAAGTTTTCGATCACTTTGAACATTTTGGAGAGAGTAAAACAGACCTAAATTGAAAATTTAGCCTATTCAAATCTTTTGAAAATTCTATTTCTTCAGCTATTTGCCTGCTTCGGAAAACCCCTTGTTTTTGGCCCTTTTTTGAAATCAAAACGTAAAATACAAGTTTCTTGCAGAAATCGGCAAATAGCTGAAGAAATAGAACTTTTCGAAAATCCTGAAATTGCTAAATTTTCAATTTAGGTCTGTTTTACACCTTTCAAAATTTTCAAACTAATCGGRAACTTGACAGACGAGCTTCAGACTCCGGAAGATGATCAAAATAGCTGAAAATCCACGGAAATTCCTTTTTTAAAATATTTTTTTGACGGGTACTGTAGCTTCAGGCGCCTAAAAAACAAAAACCCACATTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34843</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>52696</contig_pos>
        <strand></strand>
        <context>tgaaaatcca[C/T]kgaaattcct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACAGACGAGCTTCAGACTCCGGAAGATGATCAAAATAGCTGAAAATCCA</left_flank>
        <right_flank>GGAAATTCCTTTTTTAAAATATTTTTTTGACGGGTACTGTAGCTTCAGGC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACGCTAGATCGATGATTTCCGGCAGGAATAGTAGGAAACGGTCTTTGAATTGCTGGAAATTATGAGGATTAGTATTTTAATGGCAATTTCGGATAGTTTTTACAGTGATTTCCTTTTATTTGCGGCCATTTTGACCATTTTCAGAAGTCTAGAGCTCGGCGGTCAAGTTTTCGATCACTTTGAACATTTTGGAGAGAGTAAAACAGACCTAAATTGAAAATTTAGCCTATTCAAATCTTTTGAAAATTCTATTTCTTCAGCTATTTGCCTGCTTCGGAAAACCCCTTGTTTTTGGCCCTTTTTTGAAATCAAAACGTAAAATACAAGTTTCTTGCAGAAATCGGCAAATAGCTGAAGAAATAGAACTTTTCGAAAATCCTGAAATTGCTAAATTTTCAATTTAGGTCTGTTTTACACCTTTCAAAATTTTCAAACTAATCGGAAACTTGACAGACGAGCTTCAGACTCCGGAAGATGATCAAAATAGCTGAAAATCCACGGAAATTCCTTTTTTAAAATATTTTTTTGACGGGTACTGTAGCTTCAGGCGCCTAAAAAACAAAAACCCACATTAAAATTGATGGCATGGTCGTTGCATAGCACTCTGTCAATTATACTACCGGCGAAAATGGATAAATTGAGCTTTTCGCATAAAATGAGCAATCCGTCCTTGTCCAATAATCCATTACGTTCAGAGTTGCATGAGTTGAATAACTGCAAAACACGGGATTACGGTCATCTGGTTGAAATTCTTTTTCTTCAAAGACTTTTAGTGCGTTTTTTGTCAAATCTTCTCATGTAAAATCTGATGTTTTAGTTGAAAATTCAAAAATCAATACACTCACCCTTTTAAGTTCCTTTACATGTACGTTTTCATCGCTCAAACCTTCATCTTGTTGAGCCATTGACTGCATTCAAATCATTTCGAGAATATTCCTGTAAAAAAGTGATTTTTATTTTCCAATAAACCATCAAAACGCCACGTTTTCAAAAAAAAAA</canonical>
            <polymorphic>GACGCTAGATCGATGATTTCCGGCAGGAATAGTAGGAAACGGTCTTTGAATTGCTGGAAATTATGAGGATTAGTATTTTAATGGCAATTTCGGATAGTTTTTACAGTGATTTCCTTTTATTTGCGGCCATTTTGACCATTTTCAGAAGTCTAGAGCTCGGCGGTCAAGTTTTCGATCACTTTGAACATTTTGGAGAGAGTAAAACAGACCTAAATTGAAAATTTAGCCTATTCAAATCTTTTGAAAATTCTATTTCTTCAGCTATTTGCCTGCTTCGGAAAACCCCTTGTTTTTGGCCCTTTTTTGAAATCAAAACGTAAAATACAAGTTTCTTGCAGAAATCGGCAAATAGCTGAAGAAATAGAACTTTTCGAAAATCCTGAAATTGCTAAATTTTCAATTTAGGTCTGTTTTACACCTTTCAAAATTTTCAAACTAATCGGAAACTTGACAGACGAGCTTCAGACTCCGGAAGATGATCAAAATAGCTGAAAATCCAYGGAAATTCCTTTTTTAAAATATTTTTTTGACGGGTACTGTAGCTTCAGGCGCCTAAAAAACAAAAACCCACATTAAAATTGATGGCATGGTCGTTGCATAGCACTCTGTCAATTATACTACCGGCGAAAATGGATAAATTGAGCTTTTCGCATAAAATGAGCAATCCGTCCTTGTCCAATAATCCATTACGTTCAGAGTTGCATGAGTTGAATAACTGCAAAACACGGGATTACGGTCATCTGGTTGAAATTCTTTTTCTTCAAAGACTTTTAGTGCGTTTTTTGTCAAATCTTCTCATGTAAAATCTGATGTTTTAGTTGAAAATTCAAAAATCAATACACTCACCCTTTTAAGTTCCTTTACATGTACGTTTTCATCGCTCAAACCTTCATCTTGTTGAGCCATTGACTGCATTCAAATCATTTCGAGAATATTCCTGTAAAAAAGTGATTTTTATTTTCCAATAAACCATCAAAACGCCACGTTTTCAAAAAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>239 122 108 105 82 71 70 65 51 33 33 17 4</canonical_bands>
                <polymorphic_bands>239 153 122 108 105 70 65 51 33 33 17 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCGGATAGTTTTTACAGTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTAATGTGGGTTTTTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>491</pcr_amplicon_size>
		<canonical_amplicon>ATTTCGGATAGTTTTTACAGTGATTTCCTTTTATTTGCGGCCATTTTGACCATTTTCAGAAGTCTAGAGCTCGGCGGTCAAGTTTTCGATCACTTTGAACATTTTGGAGAGAGTAAAACAGACCTAAATTGAAAATTTAGCCTATTCAAATCTTTTGAAAATTCTATTTCTTCAGCTATTTGCCTGCTTCGGAAAACCCCTTGTTTTTGGCCCTTTTTTGAAATCAAAACGTAAAATACAAGTTTCTTGCAGAAATCGGCAAATAGCTGAAGAAATAGAACTTTTCGAAAATCCTGAAATTGCTAAATTTTCAATTTAGGTCTGTTTTACACCTTTCAAAATTTTCAAACTAATCGGAAACTTGACAGACGAGCTTCAGACTCCGGAAGATGATCAAAATAGCTGAAAATCCACGGAAATTCCTTTTTTAAAATATTTTTTTGACGGGTACTGTAGCTTCAGGCGCCTAAAAAACAAAAACCCACATTAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTCGGATAGTTTTTACAGTGATTTCCTTTTATTTGCGGCCATTTTGACCATTTTCAGAAGTCTAGAGCTCGGCGGTCAAGTTTTCGATCACTTTGAACATTTTGGAGAGAGTAAAACAGACCTAAATTGAAAATTTAGCCTATTCAAATCTTTTGAAAATTCTATTTCTTCAGCTATTTGCCTGCTTCGGAAAACCCCTTGTTTTTGGCCCTTTTTTGAAATCAAAACGTAAAATACAAGTTTCTTGCAGAAATCGGCAAATAGCTGAAGAAATAGAACTTTTCGAAAATCCTGAAATTGCTAAATTTTCAATTTAGGTCTGTTTTACACCTTTCAAAATTTTCAAACTAATCGGAAACTTGACAGACGAGCTTCAGACTCCGGAAGATGATCAAAATAGCTGAAAATCCAYGGAAATTCCTTTTTTAAAATATTTTTTTGACGGGTACTGTAGCTTCAGGCGCCTAAAAAACAAAAACCCACATTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34844</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>52697</contig_pos>
        <strand></strand>
        <context>gaaaatccay[G/T]gaaattcctt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACAGACGAGCTTCAGACTCCGGAAGATGATCAAAATAGCTGAAAATCCAC</left_flank>
        <right_flank>GAAATTCCTTTTTTAAAATATTTTTTTGACGGGTACTGTAGCTTCAGGCG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGCTAGATCGATGATTTCCGGCAGGAATAGTAGGAAACGGTCTTTGAATTGCTGGAAATTATGAGGATTAGTATTTTAATGGCAATTTCGGATAGTTTTTACAGTGATTTCCTTTTATTTGCGGCCATTTTGACCATTTTCAGAAGTCTAGAGCTCGGCGGTCAAGTTTTCGATCACTTTGAACATTTTGGAGAGAGTAAAACAGACCTAAATTGAAAATTTAGCCTATTCAAATCTTTTGAAAATTCTATTTCTTCAGCTATTTGCCTGCTTCGGAAAACCCCTTGTTTTTGGCCCTTTTTTGAAATCAAAACGTAAAATACAAGTTTCTTGCAGAAATCGGCAAATAGCTGAAGAAATAGAACTTTTCGAAAATCCTGAAATTGCTAAATTTTCAATTTAGGTCTGTTTTACACCTTTCAAAATTTTCAAACTAATCGGAAACTTGACAGACGAGCTTCAGACTCCGGAAGATGATCAAAATAGCTGAAAATCCACGGAAATTCCTTTTTTAAAATATTTTTTTGACGGGTACTGTAGCTTCAGGCGCCTAAAAAACAAAAACCCACATTAAAATTGATGGCATGGTCGTTGCATAGCACTCTGTCAATTATACTACCGGCGAAAATGGATAAATTGAGCTTTTCGCATAAAATGAGCAATCCGTCCTTGTCCAATAATCCATTACGTTCAGAGTTGCATGAGTTGAATAACTGCAAAACACGGGATTACGGTCATCTGGTTGAAATTCTTTTTCTTCAAAGACTTTTAGTGCGTTTTTTGTCAAATCTTCTCATGTAAAATCTGATGTTTTAGTTGAAAATTCAAAAATCAATACACTCACCCTTTTAAGTTCCTTTACATGTACGTTTTCATCGCTCAAACCTTCATCTTGTTGAGCCATTGACTGCATTCAAATCATTTCGAGAATATTCCTGTAAAAAAGTGATTTTTATTTTCCAATAAACCATCAAAACGCCACGTTTTCAAAAAAAAAAA</canonical>
            <polymorphic>ACGCTAGATCGATGATTTCCGGCAGGAATAGTAGGAAACGGTCTTTGAATTGCTGGAAATTATGAGGATTAGTATTTTAATGGCAATTTCGGATAGTTTTTACAGTGATTTCCTTTTATTTGCGGCCATTTTGACCATTTTCAGAAGTCTAGAGCTCGGCGGTCAAGTTTTCGATCACTTTGAACATTTTGGAGAGAGTAAAACAGACCTAAATTGAAAATTTAGCCTATTCAAATCTTTTGAAAATTCTATTTCTTCAGCTATTTGCCTGCTTCGGAAAACCCCTTGTTTTTGGCCCTTTTTTGAAATCAAAACGTAAAATACAAGTTTCTTGCAGAAATCGGCAAATAGCTGAAGAAATAGAACTTTTCGAAAATCCTGAAATTGCTAAATTTTCAATTTAGGTCTGTTTTACACCTTTCAAAATTTTCAAACTAATCGGAAACTTGACAGACGAGCTTCAGACTCCGGAAGATGATCAAAATAGCTGAAAATCCACKGAAATTCCTTTTTTAAAATATTTTTTTGACGGGTACTGTAGCTTCAGGCGCCTAAAAAACAAAAACCCACATTAAAATTGATGGCATGGTCGTTGCATAGCACTCTGTCAATTATACTACCGGCGAAAATGGATAAATTGAGCTTTTCGCATAAAATGAGCAATCCGTCCTTGTCCAATAATCCATTACGTTCAGAGTTGCATGAGTTGAATAACTGCAAAACACGGGATTACGGTCATCTGGTTGAAATTCTTTTTCTTCAAAGACTTTTAGTGCGTTTTTTGTCAAATCTTCTCATGTAAAATCTGATGTTTTAGTTGAAAATTCAAAAATCAATACACTCACCCTTTTAAGTTCCTTTACATGTACGTTTTCATCGCTCAAACCTTCATCTTGTTGAGCCATTGACTGCATTCAAATCATTTCGAGAATATTCCTGTAAAAAAGTGATTTTTATTTTCCAATAAACCATCAAAACGCCACGTTTTCAAAAAAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCGGATAGTTTTTACAGTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTAATGTGGGTTTTTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>491</pcr_amplicon_size>
		<canonical_amplicon>ATTTCGGATAGTTTTTACAGTGATTTCCTTTTATTTGCGGCCATTTTGACCATTTTCAGAAGTCTAGAGCTCGGCGGTCAAGTTTTCGATCACTTTGAACATTTTGGAGAGAGTAAAACAGACCTAAATTGAAAATTTAGCCTATTCAAATCTTTTGAAAATTCTATTTCTTCAGCTATTTGCCTGCTTCGGAAAACCCCTTGTTTTTGGCCCTTTTTTGAAATCAAAACGTAAAATACAAGTTTCTTGCAGAAATCGGCAAATAGCTGAAGAAATAGAACTTTTCGAAAATCCTGAAATTGCTAAATTTTCAATTTAGGTCTGTTTTACACCTTTCAAAATTTTCAAACTAATCGGAAACTTGACAGACGAGCTTCAGACTCCGGAAGATGATCAAAATAGCTGAAAATCCACGGAAATTCCTTTTTTAAAATATTTTTTTGACGGGTACTGTAGCTTCAGGCGCCTAAAAAACAAAAACCCACATTAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTCGGATAGTTTTTACAGTGATTTCCTTTTATTTGCGGCCATTTTGACCATTTTCAGAAGTCTAGAGCTCGGCGGTCAAGTTTTCGATCACTTTGAACATTTTGGAGAGAGTAAAACAGACCTAAATTGAAAATTTAGCCTATTCAAATCTTTTGAAAATTCTATTTCTTCAGCTATTTGCCTGCTTCGGAAAACCCCTTGTTTTTGGCCCTTTTTTGAAATCAAAACGTAAAATACAAGTTTCTTGCAGAAATCGGCAAATAGCTGAAGAAATAGAACTTTTCGAAAATCCTGAAATTGCTAAATTTTCAATTTAGGTCTGTTTTACACCTTTCAAAATTTTCAAACTAATCGGAAACTTGACAGACGAGCTTCAGACTCCGGAAGATGATCAAAATAGCTGAAAATCCACKGAAATTCCTTTTTTAAAATATTTTTTTGACGGGTACTGTAGCTTCAGGCGCCTAAAAAACAAAAACCCACATTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34845</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>52712</contig_pos>
        <strand></strand>
        <context>ttcctttttt[A/T]aaatattttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTCCGGAAGATGATCAAAATAGCTGAAAATCCACGGAAATTCCTTTTTT</left_flank>
        <right_flank>AAATATTTTTTTGACGGGTACTGTAGCTTCAGGCGCCTAAAAAACAAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCCGGCAGGAATAGTAGGAAACGGTCTTTGAATTGCTGGAAATTATGAGGATTAGTATTTTAATGGCAATTTCGGATAGTTTTTACAGTGATTTCCTTTTATTTGCGGCCATTTTGACCATTTTCAGAAGTCTAGAGCTCGGCGGTCAAGTTTTCGATCACTTTGAACATTTTGGAGAGAGTAAAACAGACCTAAATTGAAAATTTAGCCTATTCAAATCTTTTGAAAATTCTATTTCTTCAGCTATTTGCCTGCTTCGGAAAACCCCTTGTTTTTGGCCCTTTTTTGAAATCAAAACGTAAAATACAAGTTTCTTGCAGAAATCGGCAAATAGCTGAAGAAATAGAACTTTTCGAAAATCCTGAAATTGCTAAATTTTCAATTTAGGTCTGTTTTACACCTTTCAAAATTTTCAAACTAATCGGAAACTTGACAGACGAGCTTCAGACTCCGGAAGATGATCAAAATAGCTGAAAATCCACGGAAATTCCTTTTTTAAAATATTTTTTTGACGGGTACTGTAGCTTCAGGCGCCTAAAAAACAAAAACCCACATTAAAATTGATGGCATGGTCGTTGCATAGCACTCTGTCAATTATACTACCGGCGAAAATGGATAAATTGAGCTTTTCGCATAAAATGAGCAATCCGTCCTTGTCCAATAATCCATTACGTTCAGAGTTGCATGAGTTGAATAACTGCAAAACACGGGATTACGGTCATCTGGTTGAAATTCTTTTTCTTCAAAGACTTTTAGTGCGTTTTTTGTCAAATCTTCTCATGTAAAATCTGATGTTTTAGTTGAAAATTCAAAAATCAATACACTCACCCTTTTAAGTTCCTTTACATGTACGTTTTCATCGCTCAAACCTTCATCTTGTTGAGCCATTGACTGCATTCAAATCATTTCGAGAATATTCCTGTAAAAAAGTGATTTTTATTTTCCAATAAACCATCAAAACGCCACGTTTTCAAAAAAAAAAACGAATTTACATAAAA</canonical>
            <polymorphic>TTTCCGGCAGGAATAGTAGGAAACGGTCTTTGAATTGCTGGAAATTATGAGGATTAGTATTTTAATGGCAATTTCGGATAGTTTTTACAGTGATTTCCTTTTATTTGCGGCCATTTTGACCATTTTCAGAAGTCTAGAGCTCGGCGGTCAAGTTTTCGATCACTTTGAACATTTTGGAGAGAGTAAAACAGACCTAAATTGAAAATTTAGCCTATTCAAATCTTTTGAAAATTCTATTTCTTCAGCTATTTGCCTGCTTCGGAAAACCCCTTGTTTTTGGCCCTTTTTTGAAATCAAAACGTAAAATACAAGTTTCTTGCAGAAATCGGCAAATAGCTGAAGAAATAGAACTTTTCGAAAATCCTGAAATTGCTAAATTTTCAATTTAGGTCTGTTTTACACCTTTCAAAATTTTCAAACTAATCGGAAACTTGACAGACGAGCTTCAGACTCCGGAAGATGATCAAAATAGCTGAAAATCCACGGAAATTCCTTTTTTWAAATATTTTTTTGACGGGTACTGTAGCTTCAGGCGCCTAAAAAACAAAAACCCACATTAAAATTGATGGCATGGTCGTTGCATAGCACTCTGTCAATTATACTACCGGCGAAAATGGATAAATTGAGCTTTTCGCATAAAATGAGCAATCCGTCCTTGTCCAATAATCCATTACGTTCAGAGTTGCATGAGTTGAATAACTGCAAAACACGGGATTACGGTCATCTGGTTGAAATTCTTTTTCTTCAAAGACTTTTAGTGCGTTTTTTGTCAAATCTTCTCATGTAAAATCTGATGTTTTAGTTGAAAATTCAAAAATCAATACACTCACCCTTTTAAGTTCCTTTACATGTACGTTTTCATCGCTCAAACCTTCATCTTGTTGAGCCATTGACTGCATTCAAATCATTTCGAGAATATTCCTGTAAAAAAGTGATTTTTATTTTCCAATAAACCATCAAAACGCCACGTTTTCAAAAAAAAAAACGAATTTACATAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>436 278 165 62 59</canonical_bands>
                <polymorphic_bands>495 278 165 62</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCGGATAGTTTTTACAGTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTAATGTGGGTTTTTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>491</pcr_amplicon_size>
		<canonical_amplicon>ATTTCGGATAGTTTTTACAGTGATTTCCTTTTATTTGCGGCCATTTTGACCATTTTCAGAAGTCTAGAGCTCGGCGGTCAAGTTTTCGATCACTTTGAACATTTTGGAGAGAGTAAAACAGACCTAAATTGAAAATTTAGCCTATTCAAATCTTTTGAAAATTCTATTTCTTCAGCTATTTGCCTGCTTCGGAAAACCCCTTGTTTTTGGCCCTTTTTTGAAATCAAAACGTAAAATACAAGTTTCTTGCAGAAATCGGCAAATAGCTGAAGAAATAGAACTTTTCGAAAATCCTGAAATTGCTAAATTTTCAATTTAGGTCTGTTTTACACCTTTCAAAATTTTCAAACTAATCGGAAACTTGACAGACGAGCTTCAGACTCCGGAAGATGATCAAAATAGCTGAAAATCCACGGAAATTCCTTTTTTAAAATATTTTTTTGACGGGTACTGTAGCTTCAGGCGCCTAAAAAACAAAAACCCACATTAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTCGGATAGTTTTTACAGTGATTTCCTTTTATTTGCGGCCATTTTGACCATTTTCAGAAGTCTAGAGCTCGGCGGTCAAGTTTTCGATCACTTTGAACATTTTGGAGAGAGTAAAACAGACCTAAATTGAAAATTTAGCCTATTCAAATCTTTTGAAAATTCTATTTCTTCAGCTATTTGCCTGCTTCGGAAAACCCCTTGTTTTTGGCCCTTTTTTGAAATCAAAACGTAAAATACAAGTTTCTTGCAGAAATCGGCAAATAGCTGAAGAAATAGAACTTTTCGAAAATCCTGAAATTGCTAAATTTTCAATTTAGGTCTGTTTTACACCTTTCAAAATTTTCAAACTAATCGGAAACTTGACAGACGAGCTTCAGACTCCGGAAGATGATCAAAATAGCTGAAAATCCACGGAAATTCCTTTTTTWAAATATTTTTTTGACGGGTACTGTAGCTTCAGGCGCCTAAAAAACAAAAACCCACATTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34846</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>60529</contig_pos>
        <strand>+</strand>
        <context>TAGTGAACAC[A/G]CCATCAGCGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGCACGAAACACTCTTATCATATTACATCATTCACAGCCTAGTGAACAC</left_flank>
        <right_flank>CCATCAGCGACAACATCTTGATTTTCGCCGTTTTCTCTGAATCGCTTGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTCGTCATATCACACGTGTGCCCCCGTCCTTTGATATATCCTCATTTTTTGAGTACTTTTTTAGTAAAATTCGTGGTCCTCTTTGCCTTTTTTCAAGATAATGAGGCGATTCTGAATTTTTGATGCAAACCTTGGCAATAATTCTCGCTTCTTAGATGTCGCGATGCAATCTTGTCAATTAATCTCAATTCATTTCTTCCGCCAAACCATTTTTTTAAAATTAGATTCAGACGATGCCCCTGCGACGATTGGCTTTTGATTTCTGTACTATTTTTCTTTTTTCGCTCTATTGCGTGGCAAATAGAGATAGCCAGACGTTTTCCACATTATCATTGTGGTGGTGGAGCGCACAATAGTTTTGCCGAAAGCATACATAGAAAAAACATAGTCTCCACGTGCTGTTATCTCTTTTTCTCTCTCTCTTTTTTCTCTTATTAATACCTTGAAGTGCACGAAACACTCTTATCATATTACATCATTCACAGCCTAGTGAACACGCCATCAGCGACAACATCTTGATTTTCGCCGTTTTCTCTGAATCGCTTGTTTCTTTTTTTTTTGTTTAAATTCTCATTTTTCAGTACTTCCTACAATGTCGGAACTCGTCAAAACGCTCGTCCTCCGTCCGGACATCTCCAAACCAAAATGGGATCAGTCGACATTTGAGGGAAGAGCCAAGGTATAGGAGATTATGATATTTGATTTTTTAGAAAAAAATTTGTCAGCATTTCTTTGCCATCACCAACCCGCTGAATCTGTTCTACGGTACAAATCAATTGGATGATTTCAAGAAGATTGTCGATGAATACAGGTTGGTATTCTAAGTTTGAAAATTATGAGTAAAATCCGCGGTCGGCCGTGACTTAGGCCGTGGGTAGGTTGCCGTGGACCGATTCTCAAAAAGAAGGTCAGCGACTCAGGGACCATTAAGTTCTCGAGGCCGCCGTAACCTACCTATCTCAAAAATACCCTAATCAGAAAGCTGCGACCGACCGTAG</canonical>
            <polymorphic>CACTCGTCATATCACACGTGTGCCCCCGTCCTTTGATATATCCTCATTTTTTGAGTACTTTTTTAGTAAAATTCGTGGTCCTCTTTGCCTTTTTTCAAGATAATGAGGCGATTCTGAATTTTTGATGCAAACCTTGGCAATAATTCTCGCTTCTTAGATGTCGCGATGCAATCTTGTCAATTAATCTCAATTCATTTCTTCCGCCAAACCATTTTTTTAAAATTAGATTCAGACGATGCCCCTGCGACGATTGGCTTTTGATTTCTGTACTATTTTTCTTTTTTCGCTCTATTGCGTGGCAAATAGAGATAGCCAGACGTTTTCCACATTATCATTGTGGTGGTGGAGCGCACAATAGTTTTGCCGAAAGCATACATAGAAAAAACATAGTCTCCACGTGCTGTTATCTCTTTTTCTCTCTCTCTTTTTTCTCTTATTAATACCTTGAAGTGCACGAAACACTCTTATCATATTACATCATTCACAGCCTAGTGAACACRCCATCAGCGACAACATCTTGATTTTCGCCGTTTTCTCTGAATCGCTTGTTTCTTTTTTTTTTGTTTAAATTCTCATTTTTCAGTACTTCCTACAATGTCGGAACTCGTCAAAACGCTCGTCCTCCGTCCGGACATCTCCAAACCAAAATGGGATCAGTCGACATTTGAGGGAAGAGCCAAGGTATAGGAGATTATGATATTTGATTTTTTAGAAAAAAATTTGTCAGCATTTCTTTGCCATCACCAACCCGCTGAATCTGTTCTACGGTACAAATCAATTGGATGATTTCAAGAAGATTGTCGATGAATACAGGTTGGTATTCTAAGTTTGAAAATTATGAGTAAAATCCGCGGTCGGCCGTGACTTAGGCCGTGGGTAGGTTGCCGTGGACCGATTCTCAAAAAGAAGGTCAGCGACTCAGGGACCATTAAGTTCTCGAGGCCGCCGTAACCTACCTATCTCAAAAATACCCTAATCAGAAAGCTGCGACCGACCGTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATAGAGATAGCCAGACGTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAACAAGCGATTCAGAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAATAGAGATAGCCAGACGTTTTCCACATTATCATTGTGGTGGTGGAGCGCACAATAGTTTTGCCGAAAGCATACATAGAAAAAACATAGTCTCCACGTGCTGTTATCTCTTTTTCTCTCTCTCTTTTTTCTCTTATTAATACCTTGAAGTGCACGAAACACTCTTATCATATTACATCATTCACAGCCTAGTGAACACGCCATCAGCGACAACATCTTGATTTTCGCCGTTTTCTCTGAATCGCTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>AAATAGAGATAGCCAGACGTTTTCCACATTATCATTGTGGTGGTGGAGCGCACAATAGTTTTGCCGAAAGCATACATAGAAAAAACATAGTCTCCACGTGCTGTTATCTCTTTTTCTCTCTCTCTTTTTTCTCTTATTAATACCTTGAAGTGCACGAAACACTCTTATCATATTACATCATTCACAGCCTAGTGAACACRCCATCAGCGACAACATCTTGATTTTCGCCGTTTTCTCTGAATCGCTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34847</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>60695</contig_pos>
        <strand>+</strand>
        <context>AGTCGACATT[C/T]GAGGGAAGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCGTCCTCCGTCCGGACATCTCCAAACCAAAATGGGATCAGTCGACATT</left_flank>
        <right_flank>GAGGGAAGAGCCAAGGTATAGGAGATTATGATATTTGATTTTTTAGAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCAATCTTGTCAATTAATCTCAATTCATTTCTTCCGCCAAACCATTTTTTTAAAATTAGATTCAGACGATGCCCCTGCGACGATTGGCTTTTGATTTCTGTACTATTTTTCTTTTTTCGCTCTATTGCGTGGCAAATAGAGATAGCCAGACGTTTTCCACATTATCATTGTGGTGGTGGAGCGCACAATAGTTTTGCCGAAAGCATACATAGAAAAAACATAGTCTCCACGTGCTGTTATCTCTTTTTCTCTCTCTCTTTTTTCTCTTATTAATACCTTGAAGTGCACGAAACACTCTTATCATATTACATCATTCACAGCCTAGTGAACACGCCATCAGCGACAACATCTTGATTTTCGCCGTTTTCTCTGAATCGCTTGTTTCTTTTTTTTTTGTTTAAATTCTCATTTTTCAGTACTTCCTACAATGTCGGAACTCGTCAAAACGCTCGTCCTCCGTCCGGACATCTCCAAACCAAAATGGGATCAGTCGACATTTGAGGGAAGAGCCAAGGTATAGGAGATTATGATATTTGATTTTTTAGAAAAAAATTTGTCAGCATTTCTTTGCCATCACCAACCCGCTGAATCTGTTCTACGGTACAAATCAATTGGATGATTTCAAGAAGATTGTCGATGAATACAGGTTGGTATTCTAAGTTTGAAAATTATGAGTAAAATCCGCGGTCGGCCGTGACTTAGGCCGTGGGTAGGTTGCCGTGGACCGATTCTCAAAAAGAAGGTCAGCGACTCAGGGACCATTAAGTTCTCGAGGCCGCCGTAACCTACCTATCTCAAAAATACCCTAATCAGAAAGCTGCGACCGACCGTAGCCTTGACTCATTGGCAAGATGTATCTTTCAAAATAACATAAAGTGCCAAATCCTACCCATCCTAAAAATAGCGTTACCAAAAAGATGAAGTCCTGCCTCTGGCAGCATTTGTCTAAATCTAAAGATTATGAATGGAATTTGACTTTGGAATCGGATTAAATGGATT</canonical>
            <polymorphic>TGCAATCTTGTCAATTAATCTCAATTCATTTCTTCCGCCAAACCATTTTTTTAAAATTAGATTCAGACGATGCCCCTGCGACGATTGGCTTTTGATTTCTGTACTATTTTTCTTTTTTCGCTCTATTGCGTGGCAAATAGAGATAGCCAGACGTTTTCCACATTATCATTGTGGTGGTGGAGCGCACAATAGTTTTGCCGAAAGCATACATAGAAAAAACATAGTCTCCACGTGCTGTTATCTCTTTTTCTCTCTCTCTTTTTTCTCTTATTAATACCTTGAAGTGCACGAAACACTCTTATCATATTACATCATTCACAGCCTAGTGAACACGCCATCAGCGACAACATCTTGATTTTCGCCGTTTTCTCTGAATCGCTTGTTTCTTTTTTTTTTGTTTAAATTCTCATTTTTCAGTACTTCCTACAATGTCGGAACTCGTCAAAACGCTCGTCCTCCGTCCGGACATCTCCAAACCAAAATGGGATCAGTCGACATTYGAGGGAAGAGCCAAGGTATAGGAGATTATGATATTTGATTTTTTAGAAAAAAATTTGTCAGCATTTCTTTGCCATCACCAACCCGCTGAATCTGTTCTACGGTACAAATCAATTGGATGATTTCAAGAAGATTGTCGATGAATACAGGTTGGTATTCTAAGTTTGAAAATTATGAGTAAAATCCGCGGTCGGCCGTGACTTAGGCCGTGGGTAGGTTGCCGTGGACCGATTCTCAAAAAGAAGGTCAGCGACTCAGGGACCATTAAGTTCTCGAGGCCGCCGTAACCTACCTATCTCAAAAATACCCTAATCAGAAAGCTGCGACCGACCGTAGCCTTGACTCATTGGCAAGATGTATCTTTCAAAATAACATAAAGTGCCAAATCCTACCCATCCTAAAAATAGCGTTACCAAAAAGATGAAGTCCTGCCTCTGGCAGCATTTGTCTAAATCTAAAGATTATGAATGGAATTTGACTTTGGAATCGGATTAAATGGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCATTTTTCAGTACTTCCTACA</pcr_primer_p1>
		<pcr_primer_p2>CTGTATTCATCGACAATCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TCTCATTTTTCAGTACTTCCTACAATGTCGGAACTCGTCAAAACGCTCGTCCTCCGTCCGGACATCTCCAAACCAAAATGGGATCAGTCGACATTTGAGGGAAGAGCCAAGGTATAGGAGATTATGATATTTGATTTTTTAGAAAAAAATTTGTCAGCATTTCTTTGCCATCACCAACCCGCTGAATCTGTTCTACGGTACAAATCAATTGGATGATTTCAAGAAGATTGTCGATGAATACAG</canonical_amplicon>
		<polymorphic_amplicon>TCTCATTTTTCAGTACTTCCTACAATGTCGGAACTCGTCAAAACGCTCGTCCTCCGTCCGGACATCTCCAAACCAAAATGGGATCAGTCGACATTYGAGGGAAGAGCCAAGGTATAGGAGATTATGATATTTGATTTTTTAGAAAAAAATTTGTCAGCATTTCTTTGCCATCACCAACCCGCTGAATCTGTTCTACGGTACAAATCAATTGGATGATTTCAAGAAGATTGTCGATGAATACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34848</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>60719</contig_pos>
        <strand>+</strand>
        <context>AGGTATAGGA[A/G]ATTATGATAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACCAAAATGGGATCAGTCGACATTTGAGGGAAGAGCCAAGGTATAGGA</left_flank>
        <right_flank>ATTATGATATTTGATTTTTTAGAAAAAAATTTGTCAGCATTTCTTTGCCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCATTTCTTCCGCCAAACCATTTTTTTAAAATTAGATTCAGACGATGCCCCTGCGACGATTGGCTTTTGATTTCTGTACTATTTTTCTTTTTTCGCTCTATTGCGTGGCAAATAGAGATAGCCAGACGTTTTCCACATTATCATTGTGGTGGTGGAGCGCACAATAGTTTTGCCGAAAGCATACATAGAAAAAACATAGTCTCCACGTGCTGTTATCTCTTTTTCTCTCTCTCTTTTTTCTCTTATTAATACCTTGAAGTGCACGAAACACTCTTATCATATTACATCATTCACAGCCTAGTGAACACGCCATCAGCGACAACATCTTGATTTTCGCCGTTTTCTCTGAATCGCTTGTTTCTTTTTTTTTTGTTTAAATTCTCATTTTTCAGTACTTCCTACAATGTCGGAACTCGTCAAAACGCTCGTCCTCCGTCCGGACATCTCCAAACCAAAATGGGATCAGTCGACATTTGAGGGAAGAGCCAAGGTATAGGAGATTATGATATTTGATTTTTTAGAAAAAAATTTGTCAGCATTTCTTTGCCATCACCAACCCGCTGAATCTGTTCTACGGTACAAATCAATTGGATGATTTCAAGAAGATTGTCGATGAATACAGGTTGGTATTCTAAGTTTGAAAATTATGAGTAAAATCCGCGGTCGGCCGTGACTTAGGCCGTGGGTAGGTTGCCGTGGACCGATTCTCAAAAAGAAGGTCAGCGACTCAGGGACCATTAAGTTCTCGAGGCCGCCGTAACCTACCTATCTCAAAAATACCCTAATCAGAAAGCTGCGACCGACCGTAGCCTTGACTCATTGGCAAGATGTATCTTTCAAAATAACATAAAGTGCCAAATCCTACCCATCCTAAAAATAGCGTTACCAAAAAGATGAAGTCCTGCCTCTGGCAGCATTTGTCTAAATCTAAAGATTATGAATGGAATTTGACTTTGGAATCGGATTAAATGGATTTTGCGGAAAGCATTACTGGTAGAT</canonical>
            <polymorphic>TTCATTTCTTCCGCCAAACCATTTTTTTAAAATTAGATTCAGACGATGCCCCTGCGACGATTGGCTTTTGATTTCTGTACTATTTTTCTTTTTTCGCTCTATTGCGTGGCAAATAGAGATAGCCAGACGTTTTCCACATTATCATTGTGGTGGTGGAGCGCACAATAGTTTTGCCGAAAGCATACATAGAAAAAACATAGTCTCCACGTGCTGTTATCTCTTTTTCTCTCTCTCTTTTTTCTCTTATTAATACCTTGAAGTGCACGAAACACTCTTATCATATTACATCATTCACAGCCTAGTGAACACGCCATCAGCGACAACATCTTGATTTTCGCCGTTTTCTCTGAATCGCTTGTTTCTTTTTTTTTTGTTTAAATTCTCATTTTTCAGTACTTCCTACAATGTCGGAACTCGTCAAAACGCTCGTCCTCCGTCCGGACATCTCCAAACCAAAATGGGATCAGTCGACATTTGAGGGAAGAGCCAAGGTATAGGARATTATGATATTTGATTTTTTAGAAAAAAATTTGTCAGCATTTCTTTGCCATCACCAACCCGCTGAATCTGTTCTACGGTACAAATCAATTGGATGATTTCAAGAAGATTGTCGATGAATACAGGTTGGTATTCTAAGTTTGAAAATTATGAGTAAAATCCGCGGTCGGCCGTGACTTAGGCCGTGGGTAGGTTGCCGTGGACCGATTCTCAAAAAGAAGGTCAGCGACTCAGGGACCATTAAGTTCTCGAGGCCGCCGTAACCTACCTATCTCAAAAATACCCTAATCAGAAAGCTGCGACCGACCGTAGCCTTGACTCATTGGCAAGATGTATCTTTCAAAATAACATAAAGTGCCAAATCCTACCCATCCTAAAAATAGCGTTACCAAAAAGATGAAGTCCTGCCTCTGGCAGCATTTGTCTAAATCTAAAGATTATGAATGGAATTTGACTTTGGAATCGGATTAAATGGATTTTGCGGAAAGCATTACTGGTAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCATTTTTCAGTACTTCCTACA</pcr_primer_p1>
		<pcr_primer_p2>CTGTATTCATCGACAATCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TCTCATTTTTCAGTACTTCCTACAATGTCGGAACTCGTCAAAACGCTCGTCCTCCGTCCGGACATCTCCAAACCAAAATGGGATCAGTCGACATTTGAGGGAAGAGCCAAGGTATAGGAGATTATGATATTTGATTTTTTAGAAAAAAATTTGTCAGCATTTCTTTGCCATCACCAACCCGCTGAATCTGTTCTACGGTACAAATCAATTGGATGATTTCAAGAAGATTGTCGATGAATACAG</canonical_amplicon>
		<polymorphic_amplicon>TCTCATTTTTCAGTACTTCCTACAATGTCGGAACTCGTCAAAACGCTCGTCCTCCGTCCGGACATCTCCAAACCAAAATGGGATCAGTCGACATTTGAGGGAAGAGCCAAGGTATAGGARATTATGATATTTGATTTTTTAGAAAAAAATTTGTCAGCATTTCTTTGCCATCACCAACCCGCTGAATCTGTTCTACGGTACAAATCAATTGGATGATTTCAAGAAGATTGTCGATGAATACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34849</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>60752</contig_pos>
        <strand>+</strand>
        <context>AAAAAAATTT[G/T]TCAGCATTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGAGCCAAGGTATAGGAGATTATGATATTTGATTTTTTAGAAAAAAATTT</left_flank>
        <right_flank>TCAGCATTTCTTTGCCATCACCAACCCGCTGAATCTGTTCTACGGTACAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGATTCAGACGATGCCCCTGCGACGATTGGCTTTTGATTTCTGTACTATTTTTCTTTTTTCGCTCTATTGCGTGGCAAATAGAGATAGCCAGACGTTTTCCACATTATCATTGTGGTGGTGGAGCGCACAATAGTTTTGCCGAAAGCATACATAGAAAAAACATAGTCTCCACGTGCTGTTATCTCTTTTTCTCTCTCTCTTTTTTCTCTTATTAATACCTTGAAGTGCACGAAACACTCTTATCATATTACATCATTCACAGCCTAGTGAACACGCCATCAGCGACAACATCTTGATTTTCGCCGTTTTCTCTGAATCGCTTGTTTCTTTTTTTTTTGTTTAAATTCTCATTTTTCAGTACTTCCTACAATGTCGGAACTCGTCAAAACGCTCGTCCTCCGTCCGGACATCTCCAAACCAAAATGGGATCAGTCGACATTTGAGGGAAGAGCCAAGGTATAGGAGATTATGATATTTGATTTTTTAGAAAAAAATTTGTCAGCATTTCTTTGCCATCACCAACCCGCTGAATCTGTTCTACGGTACAAATCAATTGGATGATTTCAAGAAGATTGTCGATGAATACAGGTTGGTATTCTAAGTTTGAAAATTATGAGTAAAATCCGCGGTCGGCCGTGACTTAGGCCGTGGGTAGGTTGCCGTGGACCGATTCTCAAAAAGAAGGTCAGCGACTCAGGGACCATTAAGTTCTCGAGGCCGCCGTAACCTACCTATCTCAAAAATACCCTAATCAGAAAGCTGCGACCGACCGTAGCCTTGACTCATTGGCAAGATGTATCTTTCAAAATAACATAAAGTGCCAAATCCTACCCATCCTAAAAATAGCGTTACCAAAAAGATGAAGTCCTGCCTCTGGCAGCATTTGTCTAAATCTAAAGATTATGAATGGAATTTGACTTTGGAATCGGATTAAATGGATTTTGCGGAAAGCATTACTGGTAGATTAACAGAACGCTGAACTAAAAAAACTGATCCAG</canonical>
            <polymorphic>TAGATTCAGACGATGCCCCTGCGACGATTGGCTTTTGATTTCTGTACTATTTTTCTTTTTTCGCTCTATTGCGTGGCAAATAGAGATAGCCAGACGTTTTCCACATTATCATTGTGGTGGTGGAGCGCACAATAGTTTTGCCGAAAGCATACATAGAAAAAACATAGTCTCCACGTGCTGTTATCTCTTTTTCTCTCTCTCTTTTTTCTCTTATTAATACCTTGAAGTGCACGAAACACTCTTATCATATTACATCATTCACAGCCTAGTGAACACGCCATCAGCGACAACATCTTGATTTTCGCCGTTTTCTCTGAATCGCTTGTTTCTTTTTTTTTTGTTTAAATTCTCATTTTTCAGTACTTCCTACAATGTCGGAACTCGTCAAAACGCTCGTCCTCCGTCCGGACATCTCCAAACCAAAATGGGATCAGTCGACATTTGAGGGAAGAGCCAAGGTATAGGAGATTATGATATTTGATTTTTTAGAAAAAAATTTKTCAGCATTTCTTTGCCATCACCAACCCGCTGAATCTGTTCTACGGTACAAATCAATTGGATGATTTCAAGAAGATTGTCGATGAATACAGGTTGGTATTCTAAGTTTGAAAATTATGAGTAAAATCCGCGGTCGGCCGTGACTTAGGCCGTGGGTAGGTTGCCGTGGACCGATTCTCAAAAAGAAGGTCAGCGACTCAGGGACCATTAAGTTCTCGAGGCCGCCGTAACCTACCTATCTCAAAAATACCCTAATCAGAAAGCTGCGACCGACCGTAGCCTTGACTCATTGGCAAGATGTATCTTTCAAAATAACATAAAGTGCCAAATCCTACCCATCCTAAAAATAGCGTTACCAAAAAGATGAAGTCCTGCCTCTGGCAGCATTTGTCTAAATCTAAAGATTATGAATGGAATTTGACTTTGGAATCGGATTAAATGGATTTTGCGGAAAGCATTACTGGTAGATTAACAGAACGCTGAACTAAAAAAACTGATCCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCATTTTTCAGTACTTCCTACA</pcr_primer_p1>
		<pcr_primer_p2>CTGTATTCATCGACAATCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TCTCATTTTTCAGTACTTCCTACAATGTCGGAACTCGTCAAAACGCTCGTCCTCCGTCCGGACATCTCCAAACCAAAATGGGATCAGTCGACATTTGAGGGAAGAGCCAAGGTATAGGAGATTATGATATTTGATTTTTTAGAAAAAAATTTGTCAGCATTTCTTTGCCATCACCAACCCGCTGAATCTGTTCTACGGTACAAATCAATTGGATGATTTCAAGAAGATTGTCGATGAATACAG</canonical_amplicon>
		<polymorphic_amplicon>TCTCATTTTTCAGTACTTCCTACAATGTCGGAACTCGTCAAAACGCTCGTCCTCCGTCCGGACATCTCCAAACCAAAATGGGATCAGTCGACATTTGAGGGAAGAGCCAAGGTATAGGAGATTATGATATTTGATTTTTTAGAAAAAAATTTKTCAGCATTTCTTTGCCATCACCAACCCGCTGAATCTGTTCTACGGTACAAATCAATTGGATGATTTCAAGAAGATTGTCGATGAATACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34850</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>60863</contig_pos>
        <strand>+</strand>
        <context>TAAGTTTGAA[A/G]ATTATGAGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATTTCAAGAAGATTGTCGATGAATACAGGTTGGTATTCTAAGTTTGAA</left_flank>
        <right_flank>ATTATGAGTAAAATCCGCGGTCGGCCGTGACTTAGGCCGTGGGTAGGTTG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTGGTGGTGGAGCGCACAATAGTTTTGCCGAAAGCATACATAGAAAAAACATAGTCTCCACGTGCTGTTATCTCTTTTTCTCTCTCTCTTTTTTCTCTTATTAATACCTTGAAGTGCACGAAACACTCTTATCATATTACATCATTCACAGCCTAGTGAACACGCCATCAGCGACAACATCTTGATTTTCGCCGTTTTCTCTGAATCGCTTGTTTCTTTTTTTTTTGTTTAAATTCTCATTTTTCAGTACTTCCTACAATGTCGGAACTCGTCAAAACGCTCGTCCTCCGTCCGGACATCTCCAAACCAAAATGGGATCAGTCGACATTTGAGGGAAGAGCCAAGGTATAGGAGATTATGATATTTGATTTTTTAGAAAAAAATTTGTCAGCATTTCTTTGCCATCACCAACCCGCTGAATCTGTTCTACGGTACAAATCAATTGGATGATTTCAAGAAGATTGTCGATGAATACAGGTTGGTATTCTAAGTTTGAAAATTATGAGTAAAATCCGCGGTCGGCCGTGACTTAGGCCGTGGGTAGGTTGCCGTGGACCGATTCTCAAAAAGAAGGTCAGCGACTCAGGGACCATTAAGTTCTCGAGGCCGCCGTAACCTACCTATCTCAAAAATACCCTAATCAGAAAGCTGCGACCGACCGTAGCCTTGACTCATTGGCAAGATGTATCTTTCAAAATAACATAAAGTGCCAAATCCTACCCATCCTAAAAATAGCGTTACCAAAAAGATGAAGTCCTGCCTCTGGCAGCATTTGTCTAAATCTAAAGATTATGAATGGAATTTGACTTTGGAATCGGATTAAATGGATTTTGCGGAAAGCATTACTGGTAGATTAACAGAACGCTGAACTAAAAAAACTGATCCAGACCCCTATTAAACAATCTTTCAGAAAGGGAACTGTCTCCAACGATCTCACTGTCAACCAGCTCTGGAAGGCGAAACACGTTGTCGATTCGGCATTCCACCCATCCACCGGC</canonical>
            <polymorphic>TTGTGGTGGTGGAGCGCACAATAGTTTTGCCGAAAGCATACATAGAAAAAACATAGTCTCCACGTGCTGTTATCTCTTTTTCTCTCTCTCTTTTTTCTCTTATTAATACCTTGAAGTGCACGAAACACTCTTATCATATTACATCATTCACAGCCTAGTGAACACGCCATCAGCGACAACATCTTGATTTTCGCCGTTTTCTCTGAATCGCTTGTTTCTTTTTTTTTTGTTTAAATTCTCATTTTTCAGTACTTCCTACAATGTCGGAACTCGTCAAAACGCTCGTCCTCCGTCCGGACATCTCCAAACCAAAATGGGATCAGTCGACATTTGAGGGAAGAGCCAAGGTATAGGAGATTATGATATTTGATTTTTTAGAAAAAAATTTGTCAGCATTTCTTTGCCATCACCAACCCGCTGAATCTGTTCTACGGTACAAATCAATTGGATGATTTCAAGAAGATTGTCGATGAATACAGGTTGGTATTCTAAGTTTGAARATTATGAGTAAAATCCGCGGTCGGCCGTGACTTAGGCCGTGGGTAGGTTGCCGTGGACCGATTCTCAAAAAGAAGGTCAGCGACTCAGGGACCATTAAGTTCTCGAGGCCGCCGTAACCTACCTATCTCAAAAATACCCTAATCAGAAAGCTGCGACCGACCGTAGCCTTGACTCATTGGCAAGATGTATCTTTCAAAATAACATAAAGTGCCAAATCCTACCCATCCTAAAAATAGCGTTACCAAAAAGATGAAGTCCTGCCTCTGGCAGCATTTGTCTAAATCTAAAGATTATGAATGGAATTTGACTTTGGAATCGGATTAAATGGATTTTGCGGAAAGCATTACTGGTAGATTAACAGAACGCTGAACTAAAAAAACTGATCCAGACCCCTATTAAACAATCTTTCAGAAAGGGAACTGTCTCCAACGATCTCACTGTCAACCAGCTCTGGAAGGCGAAACACGTTGTCGATTCGGCATTCCACCCATCCACCGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>302 233 199 150 59 57</canonical_bands>
                <polymorphic_bands>359 233 199 150 59</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGGATGATTTCAAGAAGATT</pcr_primer_p1>
		<pcr_primer_p2>AAAGATACATCTTGCCAATGAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AATTGGATGATTTCAAGAAGATTGTCGATGAATACAGGTTGGTATTCTAAGTTTGAAAATTATGAGTAAAATCCGCGGTCGGCCGTGACTTAGGCCGTGGGTAGGTTGCCGTGGACCGATTCTCAAAAAGAAGGTCAGCGACTCAGGGACCATTAAGTTCTCGAGGCCGCCGTAACCTACCTATCTCAAAAATACCCTAATCAGAAAGCTGCGACCGACCGTAGCCTTGACTCATTGGCAAGATGTATCTTT</canonical_amplicon>
		<polymorphic_amplicon>AATTGGATGATTTCAAGAAGATTGTCGATGAATACAGGTTGGTATTCTAAGTTTGAARATTATGAGTAAAATCCGCGGTCGGCCGTGACTTAGGCCGTGGGTAGGTTGCCGTGGACCGATTCTCAAAAAGAAGGTCAGCGACTCAGGGACCATTAAGTTCTCGAGGCCGCCGTAACCTACCTATCTCAAAAATACCCTAATCAGAAAGCTGCGACCGACCGTAGCCTTGACTCATTGGCAAGATGTATCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34851</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>60948</contig_pos>
        <strand></strand>
        <context>ggtcagcgac[T/C]cagggaccat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGCCGTGGGTAGGTTGCCGTGGACCGATTCTCAAAAAGAAGGTCAGCGAC</left_flank>
        <right_flank>CAGGGACCATTAAGTTCTCGAGGCCGCCGTAACCTACCTATCTCAAAAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTCTTTTTTCTCTTATTAATACCTTGAAGTGCACGAAACACTCTTATCATATTACATCATTCACAGCCTAGTGAACACGCCATCAGCGACAACATCTTGATTTTCGCCGTTTTCTCTGAATCGCTTGTTTCTTTTTTTTTTGTTTAAATTCTCATTTTTCAGTACTTCCTACAATGTCGGAACTCGTCAAAACGCTCGTCCTCCGTCCGGACATCTCCAAACCAAAATGGGATCAGTCGACATTTGAGGGAAGAGCCAAGGTATAGGAGATTATGATATTTGATTTTTTAGAAAAAAATTTGTCAGCATTTCTTTGCCATCACCAACCCGCTGAATCTGTTCTACGGTACAAATCAATTGGATGATTTCAAGAAGATTGTCGATGAATACAGGTTGGTATTCTAAGTTTGAAAATTATGAGTAAAATCCGCGGTCGGCCGTGACTTAGGCCGTGGGTAGGTTGCCGTGGACCGATTCTCAAAAAGAAGGTCAGCGACTCAGGGACCATTAAGTTCTCGAGGCCGCCGTAACCTACCTATCTCAAAAATACCCTAATCAGAAAGCTGCGACCGACCGTAGCCTTGACTCATTGGCAAGATGTATCTTTCAAAATAACATAAAGTGCCAAATCCTACCCATCCTAAAAATAGCGTTACCAAAAAGATGAAGTCCTGCCTCTGGCAGCATTTGTCTAAATCTAAAGATTATGAATGGAATTTGACTTTGGAATCGGATTAAATGGATTTTGCGGAAAGCATTACTGGTAGATTAACAGAACGCTGAACTAAAAAAACTGATCCAGACCCCTATTAAACAATCTTTCAGAAAGGGAACTGTCTCCAACGATCTCACTGTCAACCAGCTCTGGAAGGCGAAACACGTTGTCGATTCGGCATTCCACCCATCCACCGGCGAGAAAATGCTCATGGTTGGCCGCATGTCCGCCCAGGTTCCAATGAATATGGCCATCACCGGAGGAATGCTCACATTCTACAAAT</canonical>
            <polymorphic>CTCTCTTTTTTCTCTTATTAATACCTTGAAGTGCACGAAACACTCTTATCATATTACATCATTCACAGCCTAGTGAACACGCCATCAGCGACAACATCTTGATTTTCGCCGTTTTCTCTGAATCGCTTGTTTCTTTTTTTTTTGTTTAAATTCTCATTTTTCAGTACTTCCTACAATGTCGGAACTCGTCAAAACGCTCGTCCTCCGTCCGGACATCTCCAAACCAAAATGGGATCAGTCGACATTTGAGGGAAGAGCCAAGGTATAGGAGATTATGATATTTGATTTTTTAGAAAAAAATTTGTCAGCATTTCTTTGCCATCACCAACCCGCTGAATCTGTTCTACGGTACAAATCAATTGGATGATTTCAAGAAGATTGTCGATGAATACAGGTTGGTATTCTAAGTTTGAAAATTATGAGTAAAATCCGCGGTCGGCCGTGACTTAGGCCGTGGGTAGGTTGCCGTGGACCGATTCTCAAAAAGAAGGTCAGCGACYCAGGGACCATTAAGTTCTCGAGGCCGCCGTAACCTACCTATCTCAAAAATACCCTAATCAGAAAGCTGCGACCGACCGTAGCCTTGACTCATTGGCAAGATGTATCTTTCAAAATAACATAAAGTGCCAAATCCTACCCATCCTAAAAATAGCGTTACCAAAAAGATGAAGTCCTGCCTCTGGCAGCATTTGTCTAAATCTAAAGATTATGAATGGAATTTGACTTTGGAATCGGATTAAATGGATTTTGCGGAAAGCATTACTGGTAGATTAACAGAACGCTGAACTAAAAAAACTGATCCAGACCCCTATTAAACAATCTTTCAGAAAGGGAACTGTCTCCAACGATCTCACTGTCAACCAGCTCTGGAAGGCGAAACACGTTGTCGATTCGGCATTCCACCCATCCACCGGCGAGAAAATGCTCATGGTTGGCCGCATGTCCGCCCAGGTTCCAATGAATATGGCCATCACCGGAGGAATGCTCACATTCTACAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 404 53 42</canonical_bands>
                <polymorphic_bands>554 404 42</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>215 160 143 140 120 111 89 22</canonical_bands>
                <polymorphic_bands>215 160 143 140 120 111 111</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCGATGAATACAGGTTGGTAT</pcr_primer_p1>
		<pcr_primer_p2>GGCACTTTATGTTATTTTGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTCGATGAATACAGGTTGGTATTCTAAGTTTGAAAATTATGAGTAAAATCCGCGGTCGGCCGTGACTTAGGCCGTGGGTAGGTTGCCGTGGACCGATTCTCAAAAAGAAGGTCAGCGACTCAGGGACCATTAAGTTCTCGAGGCCGCCGTAACCTACCTATCTCAAAAATACCCTAATCAGAAAGCTGCGACCGACCGTAGCCTTGACTCATTGGCAAGATGTATCTTTCAAAATAACATAAAGTGCC</canonical_amplicon>
		<polymorphic_amplicon>GTCGATGAATACAGGTTGGTATTCTAAGTTTGAAAATTATGAGTAAAATCCGCGGTCGGCCGTGACTTAGGCCGTGGGTAGGTTGCCGTGGACCGATTCTCAAAAAGAAGGTCAGCGACYCAGGGACCATTAAGTTCTCGAGGCCGCCGTAACCTACCTATCTCAAAAATACCCTAATCAGAAAGCTGCGACCGACCGTAGCCTTGACTCATTGGCAAGATGTATCTTTCAAAATAACATAAAGTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34852</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>60981</contig_pos>
        <strand></strand>
        <context>gccgccgtaa[C/T]ctacctatct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAGAAGGTCAGCGACTCAGGGACCATTAAGTTCTCGAGGCCGCCGTAA</left_flank>
        <right_flank>CTACCTATCTCAAAAATACCCTAATCAGAAAGCTGCGACCGACCGTAGCC</right_flank>
        <qual_score>33</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACGAAACACTCTTATCATATTACATCATTCACAGCCTAGTGAACACGCCATCAGCGACAACATCTTGATTTTCGCCGTTTTCTCTGAATCGCTTGTTTCTTTTTTTTTTGTTTAAATTCTCATTTTTCAGTACTTCCTACAATGTCGGAACTCGTCAAAACGCTCGTCCTCCGTCCGGACATCTCCAAACCAAAATGGGATCAGTCGACATTTGAGGGAAGAGCCAAGGTATAGGAGATTATGATATTTGATTTTTTAGAAAAAAATTTGTCAGCATTTCTTTGCCATCACCAACCCGCTGAATCTGTTCTACGGTACAAATCAATTGGATGATTTCAAGAAGATTGTCGATGAATACAGGTTGGTATTCTAAGTTTGAAAATTATGAGTAAAATCCGCGGTCGGCCGTGACTTAGGCCGTGGGTAGGTTGCCGTGGACCGATTCTCAAAAAGAAGGTCAGCGACTCAGGGACCATTAAGTTCTCGAGGCCGCCGTAACCTACCTATCTCAAAAATACCCTAATCAGAAAGCTGCGACCGACCGTAGCCTTGACTCATTGGCAAGATGTATCTTTCAAAATAACATAAAGTGCCAAATCCTACCCATCCTAAAAATAGCGTTACCAAAAAGATGAAGTCCTGCCTCTGGCAGCATTTGTCTAAATCTAAAGATTATGAATGGAATTTGACTTTGGAATCGGATTAAATGGATTTTGCGGAAAGCATTACTGGTAGATTAACAGAACGCTGAACTAAAAAAACTGATCCAGACCCCTATTAAACAATCTTTCAGAAAGGGAACTGTCTCCAACGATCTCACTGTCAACCAGCTCTGGAAGGCGAAACACGTTGTCGATTCGGCATTCCACCCATCCACCGGCGAGAAAATGCTCATGGTTGGCCGCATGTCCGCCCAGGTTCCAATGAATATGGCCATCACCGGAGGAATGCTCACATTCTACAAATCGCCAATGGCCGTCATTTTCTGGCAATGGCTGA</canonical>
            <polymorphic>CACGAAACACTCTTATCATATTACATCATTCACAGCCTAGTGAACACGCCATCAGCGACAACATCTTGATTTTCGCCGTTTTCTCTGAATCGCTTGTTTCTTTTTTTTTTGTTTAAATTCTCATTTTTCAGTACTTCCTACAATGTCGGAACTCGTCAAAACGCTCGTCCTCCGTCCGGACATCTCCAAACCAAAATGGGATCAGTCGACATTTGAGGGAAGAGCCAAGGTATAGGAGATTATGATATTTGATTTTTTAGAAAAAAATTTGTCAGCATTTCTTTGCCATCACCAACCCGCTGAATCTGTTCTACGGTACAAATCAATTGGATGATTTCAAGAAGATTGTCGATGAATACAGGTTGGTATTCTAAGTTTGAAAATTATGAGTAAAATCCGCGGTCGGCCGTGACTTAGGCCGTGGGTAGGTTGCCGTGGACCGATTCTCAAAAAGAAGGTCAGCGACTCAGGGACCATTAAGTTCTCGAGGCCGCCGTAAYCTACCTATCTCAAAAATACCCTAATCAGAAAGCTGCGACCGACCGTAGCCTTGACTCATTGGCAAGATGTATCTTTCAAAATAACATAAAGTGCCAAATCCTACCCATCCTAAAAATAGCGTTACCAAAAAGATGAAGTCCTGCCTCTGGCAGCATTTGTCTAAATCTAAAGATTATGAATGGAATTTGACTTTGGAATCGGATTAAATGGATTTTGCGGAAAGCATTACTGGTAGATTAACAGAACGCTGAACTAAAAAAACTGATCCAGACCCCTATTAAACAATCTTTCAGAAAGGGAACTGTCTCCAACGATCTCACTGTCAACCAGCTCTGGAAGGCGAAACACGTTGTCGATTCGGCATTCCACCCATCCACCGGCGAGAAAATGCTCATGGTTGGCCGCATGTCCGCCCAGGTTCCAATGAATATGGCCATCACCGGAGGAATGCTCACATTCTACAAATCGCCAATGGCCGTCATTTTCTGGCAATGGCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>408 380 125 87</canonical_bands>
                <polymorphic_bands>408 380 212</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCGATGAATACAGGTTGGTAT</pcr_primer_p1>
		<pcr_primer_p2>GGCACTTTATGTTATTTTGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTCGATGAATACAGGTTGGTATTCTAAGTTTGAAAATTATGAGTAAAATCCGCGGTCGGCCGTGACTTAGGCCGTGGGTAGGTTGCCGTGGACCGATTCTCAAAAAGAAGGTCAGCGACTCAGGGACCATTAAGTTCTCGAGGCCGCCGTAACCTACCTATCTCAAAAATACCCTAATCAGAAAGCTGCGACCGACCGTAGCCTTGACTCATTGGCAAGATGTATCTTTCAAAATAACATAAAGTGCC</canonical_amplicon>
		<polymorphic_amplicon>GTCGATGAATACAGGTTGGTATTCTAAGTTTGAAAATTATGAGTAAAATCCGCGGTCGGCCGTGACTTAGGCCGTGGGTAGGTTGCCGTGGACCGATTCTCAAAAAGAAGGTCAGCGACTCAGGGACCATTAAGTTCTCGAGGCCGCCGTAAYCTACCTATCTCAAAAATACCCTAATCAGAAAGCTGCGACCGACCGTAGCCTTGACTCATTGGCAAGATGTATCTTTCAAAATAACATAAAGTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34853</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>61014</contig_pos>
        <strand></strand>
        <context>aatcagaaag[C/A]tgcgrccGAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TCTCGAGGCCGCCGTAACCTACCTATCTCAAAAATACCCTAATCAGAAAG</left_flank>
        <right_flank>TGCGACCGACCGTAGCCTTGACTCATTGGCAAGATGTATCTTTCAAAATA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCCTAGTGAACACGCCATCAGCGACAACATCTTGATTTTCGCCGTTTTCTCTGAATCGCTTGTTTCTTTTTTTTTTGTTTAAATTCTCATTTTTCAGTACTTCCTACAATGTCGGAACTCGTCAAAACGCTCGTCCTCCGTCCGGACATCTCCAAACCAAAATGGGATCAGTCGACATTTGAGGGAAGAGCCAAGGTATAGGAGATTATGATATTTGATTTTTTAGAAAAAAATTTGTCAGCATTTCTTTGCCATCACCAACCCGCTGAATCTGTTCTACGGTACAAATCAATTGGATGATTTCAAGAAGATTGTCGATGAATACAGGTTGGTATTCTAAGTTTGAAAATTATGAGTAAAATCCGCGGTCGGCCGTGACTTAGGCCGTGGGTAGGTTGCCGTGGACCGATTCTCAAAAAGAAGGTCAGCGACTCAGGGACCATTAAGTTCTCGAGGCCGCCGTAACCTACCTATCTCAAAAATACCCTAATCAGAAAGCTGCGACCGACCGTAGCCTTGACTCATTGGCAAGATGTATCTTTCAAAATAACATAAAGTGCCAAATCCTACCCATCCTAAAAATAGCGTTACCAAAAAGATGAAGTCCTGCCTCTGGCAGCATTTGTCTAAATCTAAAGATTATGAATGGAATTTGACTTTGGAATCGGATTAAATGGATTTTGCGGAAAGCATTACTGGTAGATTAACAGAACGCTGAACTAAAAAAACTGATCCAGACCCCTATTAAACAATCTTTCAGAAAGGGAACTGTCTCCAACGATCTCACTGTCAACCAGCTCTGGAAGGCGAAACACGTTGTCGATTCGGCATTCCACCCATCCACCGGCGAGAAAATGCTCATGGTTGGCCGCATGTCCGCCCAGGTTCCAATGAATATGGCCATCACCGGAGGAATGCTCACATTCTACAAATCGCCAATGGCCGTCATTTTCTGGCAATGGCTGAACCAGTCGTTCAACGCTGTGGTCAACTACACAA</canonical>
            <polymorphic>AGCCTAGTGAACACGCCATCAGCGACAACATCTTGATTTTCGCCGTTTTCTCTGAATCGCTTGTTTCTTTTTTTTTTGTTTAAATTCTCATTTTTCAGTACTTCCTACAATGTCGGAACTCGTCAAAACGCTCGTCCTCCGTCCGGACATCTCCAAACCAAAATGGGATCAGTCGACATTTGAGGGAAGAGCCAAGGTATAGGAGATTATGATATTTGATTTTTTAGAAAAAAATTTGTCAGCATTTCTTTGCCATCACCAACCCGCTGAATCTGTTCTACGGTACAAATCAATTGGATGATTTCAAGAAGATTGTCGATGAATACAGGTTGGTATTCTAAGTTTGAAAATTATGAGTAAAATCCGCGGTCGGCCGTGACTTAGGCCGTGGGTAGGTTGCCGTGGACCGATTCTCAAAAAGAAGGTCAGCGACTCAGGGACCATTAAGTTCTCGAGGCCGCCGTAACCTACCTATCTCAAAAATACCCTAATCAGAAAGMTGCGACCGACCGTAGCCTTGACTCATTGGCAAGATGTATCTTTCAAAATAACATAAAGTGCCAAATCCTACCCATCCTAAAAATAGCGTTACCAAAAAGATGAAGTCCTGCCTCTGGCAGCATTTGTCTAAATCTAAAGATTATGAATGGAATTTGACTTTGGAATCGGATTAAATGGATTTTGCGGAAAGCATTACTGGTAGATTAACAGAACGCTGAACTAAAAAAACTGATCCAGACCCCTATTAAACAATCTTTCAGAAAGGGAACTGTCTCCAACGATCTCACTGTCAACCAGCTCTGGAAGGCGAAACACGTTGTCGATTCGGCATTCCACCCATCCACCGGCGAGAAAATGCTCATGGTTGGCCGCATGTCCGCCCAGGTTCCAATGAATATGGCCATCACCGGAGGAATGCTCACATTCTACAAATCGCCAATGGCCGTCATTTTCTGGCAATGGCTGAACCAGTCGTTCAACGCTGTGGTCAACTACACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>499 299 202</canonical_bands>
                <polymorphic_bands>798 202</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>460 252 128 118 42</canonical_bands>
                <polymorphic_bands>460 252 160 128</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>283 189 182 72 71 42 42 37 32 20 16 12 2</canonical_bands>
                <polymorphic_bands>283 189 182 72 71 58 42 37 32 20 12 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>499 383 118</canonical_bands>
                <polymorphic_bands>617 383</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCGATGAATACAGGTTGGTAT</pcr_primer_p1>
		<pcr_primer_p2>GGCACTTTATGTTATTTTGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTCGATGAATACAGGTTGGTATTCTAAGTTTGAAAATTATGAGTAAAATCCGCGGTCGGCCGTGACTTAGGCCGTGGGTAGGTTGCCGTGGACCGATTCTCAAAAAGAAGGTCAGCGACTCAGGGACCATTAAGTTCTCGAGGCCGCCGTAACCTACCTATCTCAAAAATACCCTAATCAGAAAGCTGCGACCGACCGTAGCCTTGACTCATTGGCAAGATGTATCTTTCAAAATAACATAAAGTGCC</canonical_amplicon>
		<polymorphic_amplicon>GTCGATGAATACAGGTTGGTATTCTAAGTTTGAAAATTATGAGTAAAATCCGCGGTCGGCCGTGACTTAGGCCGTGGGTAGGTTGCCGTGGACCGATTCTCAAAAAGAAGGTCAGCGACTCAGGGACCATTAAGTTCTCGAGGCCGCCGTAACCTACCTATCTCAAAAATACCCTAATCAGAAAGMTGCGACCGACCGTAGCCTTGACTCATTGGCAAGATGTATCTTTCAAAATAACATAAAGTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34854</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>61019</contig_pos>
        <strand></strand>
        <context>gaaagmtgcg[A/G]ccGACCGTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGCCGCCGTAACCTACCTATCTCAAAAATACCCTAATCAGAAAGCTGCG</left_flank>
        <right_flank>CCGACCGTAGCCTTGACTCATTGGCAAGATGTATCTTTCAAAATAACATA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTGAACACGCCATCAGCGACAACATCTTGATTTTCGCCGTTTTCTCTGAATCGCTTGTTTCTTTTTTTTTTGTTTAAATTCTCATTTTTCAGTACTTCCTACAATGTCGGAACTCGTCAAAACGCTCGTCCTCCGTCCGGACATCTCCAAACCAAAATGGGATCAGTCGACATTTGAGGGAAGAGCCAAGGTATAGGAGATTATGATATTTGATTTTTTAGAAAAAAATTTGTCAGCATTTCTTTGCCATCACCAACCCGCTGAATCTGTTCTACGGTACAAATCAATTGGATGATTTCAAGAAGATTGTCGATGAATACAGGTTGGTATTCTAAGTTTGAAAATTATGAGTAAAATCCGCGGTCGGCCGTGACTTAGGCCGTGGGTAGGTTGCCGTGGACCGATTCTCAAAAAGAAGGTCAGCGACTCAGGGACCATTAAGTTCTCGAGGCCGCCGTAACCTACCTATCTCAAAAATACCCTAATCAGAAAGCTGCGACCGACCGTAGCCTTGACTCATTGGCAAGATGTATCTTTCAAAATAACATAAAGTGCCAAATCCTACCCATCCTAAAAATAGCGTTACCAAAAAGATGAAGTCCTGCCTCTGGCAGCATTTGTCTAAATCTAAAGATTATGAATGGAATTTGACTTTGGAATCGGATTAAATGGATTTTGCGGAAAGCATTACTGGTAGATTAACAGAACGCTGAACTAAAAAAACTGATCCAGACCCCTATTAAACAATCTTTCAGAAAGGGAACTGTCTCCAACGATCTCACTGTCAACCAGCTCTGGAAGGCGAAACACGTTGTCGATTCGGCATTCCACCCATCCACCGGCGAGAAAATGCTCATGGTTGGCCGCATGTCCGCCCAGGTTCCAATGAATATGGCCATCACCGGAGGAATGCTCACATTCTACAAATCGCCAATGGCCGTCATTTTCTGGCAATGGCTGAACCAGTCGTTCAACGCTGTGGTCAACTACACAAACCGC</canonical>
            <polymorphic>AGTGAACACGCCATCAGCGACAACATCTTGATTTTCGCCGTTTTCTCTGAATCGCTTGTTTCTTTTTTTTTTGTTTAAATTCTCATTTTTCAGTACTTCCTACAATGTCGGAACTCGTCAAAACGCTCGTCCTCCGTCCGGACATCTCCAAACCAAAATGGGATCAGTCGACATTTGAGGGAAGAGCCAAGGTATAGGAGATTATGATATTTGATTTTTTAGAAAAAAATTTGTCAGCATTTCTTTGCCATCACCAACCCGCTGAATCTGTTCTACGGTACAAATCAATTGGATGATTTCAAGAAGATTGTCGATGAATACAGGTTGGTATTCTAAGTTTGAAAATTATGAGTAAAATCCGCGGTCGGCCGTGACTTAGGCCGTGGGTAGGTTGCCGTGGACCGATTCTCAAAAAGAAGGTCAGCGACTCAGGGACCATTAAGTTCTCGAGGCCGCCGTAACCTACCTATCTCAAAAATACCCTAATCAGAAAGCTGCGRCCGACCGTAGCCTTGACTCATTGGCAAGATGTATCTTTCAAAATAACATAAAGTGCCAAATCCTACCCATCCTAAAAATAGCGTTACCAAAAAGATGAAGTCCTGCCTCTGGCAGCATTTGTCTAAATCTAAAGATTATGAATGGAATTTGACTTTGGAATCGGATTAAATGGATTTTGCGGAAAGCATTACTGGTAGATTAACAGAACGCTGAACTAAAAAAACTGATCCAGACCCCTATTAAACAATCTTTCAGAAAGGGAACTGTCTCCAACGATCTCACTGTCAACCAGCTCTGGAAGGCGAAACACGTTGTCGATTCGGCATTCCACCCATCCACCGGCGAGAAAATGCTCATGGTTGGCCGCATGTCCGCCCAGGTTCCAATGAATATGGCCATCACCGGAGGAATGCTCACATTCTACAAATCGCCAATGGCCGTCATTTTCTGGCAATGGCTGAACCAGTCGTTCAACGCTGTGGTCAACTACACAAACCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>499 365 132 4</canonical_bands>
                <polymorphic_bands>495 365 136 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCGATGAATACAGGTTGGTAT</pcr_primer_p1>
		<pcr_primer_p2>GGCACTTTATGTTATTTTGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTCGATGAATACAGGTTGGTATTCTAAGTTTGAAAATTATGAGTAAAATCCGCGGTCGGCCGTGACTTAGGCCGTGGGTAGGTTGCCGTGGACCGATTCTCAAAAAGAAGGTCAGCGACTCAGGGACCATTAAGTTCTCGAGGCCGCCGTAACCTACCTATCTCAAAAATACCCTAATCAGAAAGCTGCGACCGACCGTAGCCTTGACTCATTGGCAAGATGTATCTTTCAAAATAACATAAAGTGCC</canonical_amplicon>
		<polymorphic_amplicon>GTCGATGAATACAGGTTGGTATTCTAAGTTTGAAAATTATGAGTAAAATCCGCGGTCGGCCGTGACTTAGGCCGTGGGTAGGTTGCCGTGGACCGATTCTCAAAAAGAAGGTCAGCGACTCAGGGACCATTAAGTTCTCGAGGCCGCCGTAACCTACCTATCTCAAAAATACCCTAATCAGAAAGCTGCGRCCGACCGTAGCCTTGACTCATTGGCAAGATGTATCTTTCAAAATAACATAAAGTGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34855</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>61127</contig_pos>
        <strand>+</strand>
        <context>AAGTCCTGCC[C/T]CTGGCAGCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATCCTACCCATCCTAAAAATAGCGTTACCAAAAAGATGAAGTCCTGCC</left_flank>
        <right_flank>CTGGCAGCATTTGTCTAAATCTAAAGATTATGAATGGAATTTGACTTTGG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGAACTCGTCAAAACGCTCGTCCTCCGTCCGGACATCTCCAAACCAAAATGGGATCAGTCGACATTTGAGGGAAGAGCCAAGGTATAGGAGATTATGATATTTGATTTTTTAGAAAAAAATTTGTCAGCATTTCTTTGCCATCACCAACCCGCTGAATCTGTTCTACGGTACAAATCAATTGGATGATTTCAAGAAGATTGTCGATGAATACAGGTTGGTATTCTAAGTTTGAAAATTATGAGTAAAATCCGCGGTCGGCCGTGACTTAGGCCGTGGGTAGGTTGCCGTGGACCGATTCTCAAAAAGAAGGTCAGCGACTCAGGGACCATTAAGTTCTCGAGGCCGCCGTAACCTACCTATCTCAAAAATACCCTAATCAGAAAGCTGCGACCGACCGTAGCCTTGACTCATTGGCAAGATGTATCTTTCAAAATAACATAAAGTGCCAAATCCTACCCATCCTAAAAATAGCGTTACCAAAAAGATGAAGTCCTGCCTCTGGCAGCATTTGTCTAAATCTAAAGATTATGAATGGAATTTGACTTTGGAATCGGATTAAATGGATTTTGCGGAAAGCATTACTGGTAGATTAACAGAACGCTGAACTAAAAAAACTGATCCAGACCCCTATTAAACAATCTTTCAGAAAGGGAACTGTCTCCAACGATCTCACTGTCAACCAGCTCTGGAAGGCGAAACACGTTGTCGATTCGGCATTCCACCCATCCACCGGCGAGAAAATGCTCATGGTTGGCCGCATGTCCGCCCAGGTTCCAATGAATATGGCCATCACCGGAGGAATGCTCACATTCTACAAATCGCCAATGGCCGTCATTTTCTGGCAATGGCTGAACCAGTCGTTCAACGCTGTGGTCAACTACACAAACCGCTCTGGTGACGGTGGATCTGTCAGTCAGTTGCTCGTCTCGTACTGTTCCGCCACCGGAGGAGCACTCACCGCTGCTCTCGGATTGAACTCGCTGGTCAAGGTGAGAAAT</canonical>
            <polymorphic>CGGAACTCGTCAAAACGCTCGTCCTCCGTCCGGACATCTCCAAACCAAAATGGGATCAGTCGACATTTGAGGGAAGAGCCAAGGTATAGGAGATTATGATATTTGATTTTTTAGAAAAAAATTTGTCAGCATTTCTTTGCCATCACCAACCCGCTGAATCTGTTCTACGGTACAAATCAATTGGATGATTTCAAGAAGATTGTCGATGAATACAGGTTGGTATTCTAAGTTTGAAAATTATGAGTAAAATCCGCGGTCGGCCGTGACTTAGGCCGTGGGTAGGTTGCCGTGGACCGATTCTCAAAAAGAAGGTCAGCGACTCAGGGACCATTAAGTTCTCGAGGCCGCCGTAACCTACCTATCTCAAAAATACCCTAATCAGAAAGCTGCGACCGACCGTAGCCTTGACTCATTGGCAAGATGTATCTTTCAAAATAACATAAAGTGCCAAATCCTACCCATCCTAAAAATAGCGTTACCAAAAAGATGAAGTCCTGCCYCTGGCAGCATTTGTCTAAATCTAAAGATTATGAATGGAATTTGACTTTGGAATCGGATTAAATGGATTTTGCGGAAAGCATTACTGGTAGATTAACAGAACGCTGAACTAAAAAAACTGATCCAGACCCCTATTAAACAATCTTTCAGAAAGGGAACTGTCTCCAACGATCTCACTGTCAACCAGCTCTGGAAGGCGAAACACGTTGTCGATTCGGCATTCCACCCATCCACCGGCGAGAAAATGCTCATGGTTGGCCGCATGTCCGCCCAGGTTCCAATGAATATGGCCATCACCGGAGGAATGCTCACATTCTACAAATCGCCAATGGCCGTCATTTTCTGGCAATGGCTGAACCAGTCGTTCAACGCTGTGGTCAACTACACAAACCGCTCTGGTGACGGTGGATCTGTCAGTCAGTTGCTCGTCTCGTACTGTTCCGCCACCGGAGGAGCACTCACCGCTGCTCTCGGATTGAACTCGCTGGTCAAGGTGAGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACATAAAGTGCCAAATCCTAC</pcr_primer_p1>
		<pcr_primer_p2>CTGGTTGACAGTGAGATCGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAACATAAAGTGCCAAATCCTACCCATCCTAAAAATAGCGTTACCAAAAAGATGAAGTCCTGCCTCTGGCAGCATTTGTCTAAATCTAAAGATTATGAATGGAATTTGACTTTGGAATCGGATTAAATGGATTTTGCGGAAAGCATTACTGGTAGATTAACAGAACGCTGAACTAAAAAAACTGATCCAGACCCCTATTAAACAATCTTTCAGAAAGGGAACTGTCTCCAACGATCTCACTGTCAACCAG</canonical_amplicon>
		<polymorphic_amplicon>TAACATAAAGTGCCAAATCCTACCCATCCTAAAAATAGCGTTACCAAAAAGATGAAGTCCTGCCYCTGGCAGCATTTGTCTAAATCTAAAGATTATGAATGGAATTTGACTTTGGAATCGGATTAAATGGATTTTGCGGAAAGCATTACTGGTAGATTAACAGAACGCTGAACTAAAAAAACTGATCCAGACCCCTATTAAACAATCTTTCAGAAAGGGAACTGTCTCCAACGATCTCACTGTCAACCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34856</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>63319</contig_pos>
        <strand>+</strand>
        <context>TCGGCTATCA[C/G]CCAGGTCGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAACGGACAGGTGATTGGACAATCACCAGGTGTCGCCAAGTCGGCTATCA</left_flank>
        <right_flank>CCAGGTCGTCGTCTCTCGCGTCTTCATGGCAACCCCTACATTCGGTAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGATGTTGTACATTTCATTGGATGGTACTGTATCGACCATTCGAGCTACCTAATGTGAGCTTGGTTCAAGTCAGTAGCTCCAAAAAATCAACACTGTAAATCGAGTTTTTCAAGAAAAAAACCGCTTTGTAAAGACACATTCTGGCTTTTTAGCATCCTTTATTTCAAAAGAAAGTAATTGGAGGCTGCTAAATTTGTATTCAATTGGTGAAGTTTTTAATCTCTGTATTTTGAGCGTCAATATGGCATCTATAGCTTGAAGCATGAATAGCTTGAAACAGGGCTTTCTAATTTAAAGTTTTTTAGCTTAATGAAGGGTCTTACGTGAAGCAAGGTTCCTTAAGCCGATGTTTGACTCCAATGACCTTTGTTATTCTCCTTGAAATTCCAACCACTCAACTCCCGAATTTTCCAGCGAGCTCACCGACGGAATCGACATTCTTGACGAGAACGGACAGGTGATTGGACAATCACCAGGTGTCGCCAAGTCGGCTATCAGCCAGGTCGTCGTCTCTCGCGTCTTCATGGCAACCCCTACATTCGGTAAGAGAAAAAGATGAATTAAAAATTACAATGAACCCTAATTTTCTCTCCCTTTCAGCTTTCATTCCAGTCGTTGTGAATGCCCTCGAGAAGCGACCATACTTCAAGGCCAATCCGAAGATGTTCCTTCCTCTTCAGACCATCCTCTGCGGCCTTGTTCTCTCCGTGTCGACACCAGTCGGATGCGCGTTGTTCCCACAATTGACACCAGTCACTTTCGACCAAATCGAGCCAGAGCTTGCCGAGAAGCTCAAGAATTTGCCGAACCCGCCAAAGCAGCTTTATTGCAACAAAGGATTGTGAATGTGTATCAGTGATAAGCTCTTTCCTGTGTCTTATAAATAACTAAAGATAGCATTTGCCCCCCGGTTTTTATCATTTTTTGTCCTACGTGTGTGTTTATATTGCATTGAAAATAAATTGACGAGCTAGATTTTTTTCGGATGTCAAAATCAA</canonical>
            <polymorphic>AAGATGTTGTACATTTCATTGGATGGTACTGTATCGACCATTCGAGCTACCTAATGTGAGCTTGGTTCAAGTCAGTAGCTCCAAAAAATCAACACTGTAAATCGAGTTTTTCAAGAAAAAAACCGCTTTGTAAAGACACATTCTGGCTTTTTAGCATCCTTTATTTCAAAAGAAAGTAATTGGAGGCTGCTAAATTTGTATTCAATTGGTGAAGTTTTTAATCTCTGTATTTTGAGCGTCAATATGGCATCTATAGCTTGAAGCATGAATAGCTTGAAACAGGGCTTTCTAATTTAAAGTTTTTTAGCTTAATGAAGGGTCTTACGTGAAGCAAGGTTCCTTAAGCCGATGTTTGACTCCAATGACCTTTGTTATTCTCCTTGAAATTCCAACCACTCAACTCCCGAATTTTCCAGCGAGCTCACCGACGGAATCGACATTCTTGACGAGAACGGACAGGTGATTGGACAATCACCAGGTGTCGCCAAGTCGGCTATCASCCAGGTCGTCGTCTCTCGCGTCTTCATGGCAACCCCTACATTCGGTAAGAGAAAAAGATGAATTAAAAATTACAATGAACCCTAATTTTCTCTCCCTTTCAGCTTTCATTCCAGTCGTTGTGAATGCCCTCGAGAAGCGACCATACTTCAAGGCCAATCCGAAGATGTTCCTTCCTCTTCAGACCATCCTCTGCGGCCTTGTTCTCTCCGTGTCGACACCAGTCGGATGCGCGTTGTTCCCACAATTGACACCAGTCACTTTCGACCAAATCGAGCCAGAGCTTGCCGAGAAGCTCAAGAATTTGCCGAACCCGCCAAAGCAGCTTTATTGCAACAAAGGATTGTGAATGTGTATCAGTGATAAGCTCTTTCCTGTGTCTTATAAATAACTAAAGATAGCATTTGCCCCCCGGTTTTTATCATTTTTTGTCCTACGTGTGTGTTTATATTGCATTGAAAATAAATTGACGAGCTAGATTTTTTTCGGATGTCAAAATCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>107 102 79 75 73 70 68 51 46 43 42 40 38 30 28 23 18 16 14 12 12 7 6</canonical_bands>
                <polymorphic_bands>109 107 79 75 73 70 68 51 46 43 42 40 38 30 28 23 18 16 14 12 12 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGCTTAATGAAGGGTCTTACG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTCTTACCGAATGTAGG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAGCTTAATGAAGGGTCTTACGTGAAGCAAGGTTCCTTAAGCCGATGTTTGACTCCAATGACCTTTGTTATTCTCCTTGAAATTCCAACCACTCAACTCCCGAATTTTCCAGCGAGCTCACCGACGGAATCGACATTCTTGACGAGAACGGACAGGTGATTGGACAATCACCAGGTGTCGCCAAGTCGGCTATCAGCCAGGTCGTCGTCTCTCGCGTCTTCATGGCAACCCCTACATTCGGTAAGAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TAGCTTAATGAAGGGTCTTACGTGAAGCAAGGTTCCTTAAGCCGATGTTTGACTCCAATGACCTTTGTTATTCTCCTTGAAATTCCAACCACTCAACTCCCGAATTTTCCAGCGAGCTCACCGACGGAATCGACATTCTTGACGAGAACGGACAGGTGATTGGACAATCACCAGGTGTCGCCAAGTCGGCTATCASCCAGGTCGTCGTCTCTCGCGTCTTCATGGCAACCCCTACATTCGGTAAGAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34857</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>65320</contig_pos>
        <strand>+</strand>
        <context>TGTGTCTCTC[C/T]GAACACGCCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGAATGACAGAGAATGAAAAACGGGTTGGCATGGGACCTGTGTCTCTC</left_flank>
        <right_flank>GAACACGCCGTTCTCTTTCGTTTCGGAAACAGCAAGACGGCGAGAGTGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTCTGAAAGACACCTTTTTTTTGTGCTGATATTGTTAAAAAAAACCAGCACCTTTCCGAAATCAGCATCTAGCTTAAAAGCAAGAAAATTTATGCAAGTTCTGTAAATGCAGATATCTGTTTTACACCTTCCAGAAATTTCAAATTGATCAGAAACTTTGCACACGAGCTTCAGACTTCTGAAAATGGCCAAAATGACTGAAAACCGACATTAAAAAAATGTTTTATGTCTTATTGGCCGTTACGGTAATTCATGGAGCAGAAACGAATTCTTCAGTTTTGAAAAATGATTGGAAAGGAGCAAGCACATGAAAAGAAAAATGAAAAGGAGCGAAAAAAAATTGGTTGTGGTGTACTTCGTATGACAACAGCGGTTTGCTCTCAATGTGCCCCTTTCGCTTTTTGGAAGCCGTGTCTGTCTGGCACCTCTCCGTTCTCCATATAATCTAATGAATGACAGAGAATGAAAAACGGGTTGGCATGGGACCTGTGTCTCTCCGAACACGCCGTTCTCTTTCGTTTCGGAAACAGCAAGACGGCGAGAGTGGAGAAGCACAGGGTCCGCCCCACCGTCTTTTTCTAACAGATACCACGAGATGGAATTTATAGAGAACGGAGAGACAAGAAAAGCTGGAGCTTTTTTTCTCCATTTTCGCCGTGCTAGAAGACGTTTTGAGACGAATAAAGGAGAAGGGAAAATTGCTGTGGGTTTTTTGTTGCTTTCTCTGAAACGCAAAAGAAGCGAACCAAGAAAGAATCGGGTTGGAAAAAGAAGAACACTGCAGAGGAAAAACGAGGGAACAAAAATGAAAAAAGAAGAAGAAGAAGAGAGCGAGCGAGAGAAGGTTCACCCATATACAACGTACCGGAAATTTTGAATGGGGCTCATAAAAATGAAAGACGAGTGCGTTTTGTTTTTTAAAACGGGTTTTTGGGGGAAGAGAGTAACGAATGGAAGGGGTCATGAGGTTCAAAATTTGAAAGGTTTTGAGATTTTGC</canonical>
            <polymorphic>GTTTCTGAAAGACACCTTTTTTTTGTGCTGATATTGTTAAAAAAAACCAGCACCTTTCCGAAATCAGCATCTAGCTTAAAAGCAAGAAAATTTATGCAAGTTCTGTAAATGCAGATATCTGTTTTACACCTTCCAGAAATTTCAAATTGATCAGAAACTTTGCACACGAGCTTCAGACTTCTGAAAATGGCCAAAATGACTGAAAACCGACATTAAAAAAATGTTTTATGTCTTATTGGCCGTTACGGTAATTCATGGAGCAGAAACGAATTCTTCAGTTTTGAAAAATGATTGGAAAGGAGCAAGCACATGAAAAGAAAAATGAAAAGGAGCGAAAAAAAATTGGTTGTGGTGTACTTCGTATGACAACAGCGGTTTGCTCTCAATGTGCCCCTTTCGCTTTTTGGAAGCCGTGTCTGTCTGGCACCTCTCCGTTCTCCATATAATCTAATGAATGACAGAGAATGAAAAACGGGTTGGCATGGGACCTGTGTCTCTCYGAACACGCCGTTCTCTTTCGTTTCGGAAACAGCAAGACGGCGAGAGTGGAGAAGCACAGGGTCCGCCCCACCGTCTTTTTCTAACAGATACCACGAGATGGAATTTATAGAGAACGGAGAGACAAGAAAAGCTGGAGCTTTTTTTCTCCATTTTCGCCGTGCTAGAAGACGTTTTGAGACGAATAAAGGAGAAGGGAAAATTGCTGTGGGTTTTTTGTTGCTTTCTCTGAAACGCAAAAGAAGCGAACCAAGAAAGAATCGGGTTGGAAAAAGAAGAACACTGCAGAGGAAAAACGAGGGAACAAAAATGAAAAAAGAAGAAGAAGAAGAGAGCGAGCGAGAGAAGGTTCACCCATATACAACGTACCGGAAATTTTGAATGGGGCTCATAAAAATGAAAGACGAGTGCGTTTTGTTTTTTAAAACGGGTTTTTGGGGGAAGAGAGTAACGAATGGAAGGGGTCATGAGGTTCAAAATTTGAAAGGTTTTGAGATTTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGTGGTGTACTTCGTATGAC</pcr_primer_p1>
		<pcr_primer_p2>CGTGGTATCTGTTAGAAAAAGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTGTGGTGTACTTCGTATGACAACAGCGGTTTGCTCTCAATGTGCCCCTTTCGCTTTTTGGAAGCCGTGTCTGTCTGGCACCTCTCCGTTCTCCATATAATCTAATGAATGACAGAGAATGAAAAACGGGTTGGCATGGGACCTGTGTCTCTCCGAACACGCCGTTCTCTTTCGTTTCGGAAACAGCAAGACGGCGAGAGTGGAGAAGCACAGGGTCCGCCCCACCGTCTTTTTCTAACAGATACCACG</canonical_amplicon>
		<polymorphic_amplicon>GTTGTGGTGTACTTCGTATGACAACAGCGGTTTGCTCTCAATGTGCCCCTTTCGCTTTTTGGAAGCCGTGTCTGTCTGGCACCTCTCCGTTCTCCATATAATCTAATGAATGACAGAGAATGAAAAACGGGTTGGCATGGGACCTGTGTCTCTCYGAACACGCCGTTCTCTTTCGTTTCGGAAACAGCAAGACGGCGAGAGTGGAGAAGCACAGGGTCCGCCCCACCGTCTTTTTCTAACAGATACCACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34858</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>65422</contig_pos>
        <strand>+</strand>
        <context>CACGAGATGK[G/T]ATTTATAGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGCACAGGGTCCGCCCCACCGTCTTTTTCTAACAGATACCACGAGATGG</left_flank>
        <right_flank>ATTTATAGAGAACGGAGAGACAAGAAAAGCTGGAGCTTTTTTTCTCCATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTAAATGCAGATATCTGTTTTACACCTTCCAGAAATTTCAAATTGATCAGAAACTTTGCACACGAGCTTCAGACTTCTGAAAATGGCCAAAATGACTGAAAACCGACATTAAAAAAATGTTTTATGTCTTATTGGCCGTTACGGTAATTCATGGAGCAGAAACGAATTCTTCAGTTTTGAAAAATGATTGGAAAGGAGCAAGCACATGAAAAGAAAAATGAAAAGGAGCGAAAAAAAATTGGTTGTGGTGTACTTCGTATGACAACAGCGGTTTGCTCTCAATGTGCCCCTTTCGCTTTTTGGAAGCCGTGTCTGTCTGGCACCTCTCCGTTCTCCATATAATCTAATGAATGACAGAGAATGAAAAACGGGTTGGCATGGGACCTGTGTCTCTCCGAACACGCCGTTCTCTTTCGTTTCGGAAACAGCAAGACGGCGAGAGTGGAGAAGCACAGGGTCCGCCCCACCGTCTTTTTCTAACAGATACCACGAGATGGAATTTATAGAGAACGGAGAGACAAGAAAAGCTGGAGCTTTTTTTCTCCATTTTCGCCGTGCTAGAAGACGTTTTGAGACGAATAAAGGAGAAGGGAAAATTGCTGTGGGTTTTTTGTTGCTTTCTCTGAAACGCAAAAGAAGCGAACCAAGAAAGAATCGGGTTGGAAAAAGAAGAACACTGCAGAGGAAAAACGAGGGAACAAAAATGAAAAAAGAAGAAGAAGAAGAGAGCGAGCGAGAGAAGGTTCACCCATATACAACGTACCGGAAATTTTGAATGGGGCTCATAAAAATGAAAGACGAGTGCGTTTTGTTTTTTAAAACGGGTTTTTGGGGGAAGAGAGTAACGAATGGAAGGGGTCATGAGGTTCAAAATTTGAAAGGTTTTGAGATTTTGCAAGTGTTTCGGCCAGAGATTAGAAGCTGTGCTGTATTTTTCTATAGTTTGATGGTTTATAAGGCTCTTGGACATTTCGCCACAGTGGTAATACAGGCGGATG</canonical>
            <polymorphic>CTGTAAATGCAGATATCTGTTTTACACCTTCCAGAAATTTCAAATTGATCAGAAACTTTGCACACGAGCTTCAGACTTCTGAAAATGGCCAAAATGACTGAAAACCGACATTAAAAAAATGTTTTATGTCTTATTGGCCGTTACGGTAATTCATGGAGCAGAAACGAATTCTTCAGTTTTGAAAAATGATTGGAAAGGAGCAAGCACATGAAAAGAAAAATGAAAAGGAGCGAAAAAAAATTGGTTGTGGTGTACTTCGTATGACAACAGCGGTTTGCTCTCAATGTGCCCCTTTCGCTTTTTGGAAGCCGTGTCTGTCTGGCACCTCTCCGTTCTCCATATAATCTAATGAATGACAGAGAATGAAAAACGGGTTGGCATGGGACCTGTGTCTCTCCGAACACGCCGTTCTCTTTCGTTTCGGAAACAGCAAGACGGCGAGAGTGGAGAAGCACAGGGTCCGCCCCACCGTCTTTTTCTAACAGATACCACGAGATGGKATTTATAGAGAACGGAGAGACAAGAAAAGCTGGAGCTTTTTTTCTCCATTTTCGCCGTGCTAGAAGACGTTTTGAGACGAATAAAGGAGAAGGGAAAATTGCTGTGGGTTTTTTGTTGCTTTCTCTGAAACGCAAAAGAAGCGAACCAAGAAAGAATCGGGTTGGAAAAAGAAGAACACTGCAGAGGAAAAACGAGGGAACAAAAATGAAAAAAGAAGAAGAAGAAGAGAGCGAGCGAGAGAAGGTTCACCCATATACAACGTACCGGAAATTTTGAATGGGGCTCATAAAAATGAAAGACGAGTGCGTTTTGTTTTTTAAAACGGGTTTTTGGGGGAAGAGAGTAACGAATGGAAGGGGTCATGAGGTTCAAAATTTGAAAGGTTTTGAGATTTTGCAAGTGTTTCGGCCAGAGATTAGAAGCTGTGCTGTATTTTTCTATAGTTTGATGGTTTATAAGGCTCTTGGACATTTCGCCACAGTGGTAATACAGGCGGATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>333 270 131 127 104 35</canonical_bands>
                <polymorphic_bands>603 131 127 104 35</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>261 173 127 105 104 97 72 35 19 7</canonical_bands>
                <polymorphic_bands>358 173 127 105 104 72 35 19 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGAATGACAGAGAATGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTCTCCTTTATTCGTCTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATGAATGACAGAGAATGAAAAACGGGTTGGCATGGGACCTGTGTCTCTCCGAACACGCCGTTCTCTTTCGTTTCGGAAACAGCAAGACGGCGAGAGTGGAGAAGCACAGGGTCCGCCCCACCGTCTTTTTCTAACAGATACCACGAGATGGAATTTATAGAGAACGGAGAGACAAGAAAAGCTGGAGCTTTTTTTCTCCATTTTCGCCGTGCTAGAAGACGTTTTGAGACGAATAAAGGAGAAG</canonical_amplicon>
		<polymorphic_amplicon>AATGAATGACAGAGAATGAAAAACGGGTTGGCATGGGACCTGTGTCTCTCCGAACACGCCGTTCTCTTTCGTTTCGGAAACAGCAAGACGGCGAGAGTGGAGAAGCACAGGGTCCGCCCCACCGTCTTTTTCTAACAGATACCACGAGATGGKATTTATAGAGAACGGAGAGACAAGAAAAGCTGGAGCTTTTTTTCTCCATTTTCGCCGTGCTAGAAGACGTTTTGAGACGAATAAAGGAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34859</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>99685</contig_pos>
        <strand>+</strand>
        <context>TTGATTGCCA[A/T]TTTTTTGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAACCAATTATCATTCCGACCAGGAATTTCAGCTGAAAAATTGATTGCCA</left_flank>
        <right_flank>TTTTTTGTTTTTTTTAAATTTATTCTACGATCACTATTTCCAAAAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCATTTTGCTTCCAACACGACAGTGCGATAATGCCTTTGCTTCCAACACGACAGTGCGATAATGCCTGTCACCAGAGGCATCTGCCAAAAACTCATGTCGTTTGGCTGGACTTTTTTTTTTGCACCCATCGAATTTTCCGGGCCTTACCCTTCTGAATGAATAGTTGTTTGGATCTCTTTGACATCATCTTGATAGAAAAGACTCCGAGTGAAAAGATCACATAAAAATGGAGTTTACCCACGTTTTCAATCGCAGCCCTCCTCGTTCTGAGCCGATGGAATCAAAAAATTACCAGTGCGTTACCAGACAACTATCAATAGTCATGGACGTTACATTCGTTGATCTAATCCCCTCCGCTTCGAGAAAAATTCCATCAAAATTTTGCCAAAATCGAAAGAAACTTATGCACCAACCTAATACTTCCTTCAAAATTGCGTTTCTACTCTGAACCAATTATCATTCCGACCAGGAATTTCAGCTGAAAAATTGATTGCCATTTTTTTGTTTTTTTTAAATTTATTCTACGATCACTATTTCCAAAAAAAAATACCTCATTCCCATTTTGTTGACGCCAGAAATCTAAAAGTTTTTGATACTTTTTCCAAAGAATGCTCTTGGATCAGATCTGTTCTGTGAGTCATTCATTATTAGTTTTAGCTCCACTGATAATTATTAGTTTTAGCTCCACTGATAATAATTTTATTCAAAATGTTAATATTGTCATTGTTCCACATGAATATTATCATTGTTGCTACAATCCATCGCAAAAATCACCTTTTTCGCGAACAAAAAATCGCATAAAACTATTTTTTATGTTCCTCTTTTTGAAAGTTTTATGTTCAAATTTTAGTGTCGAAAAGTACCACACCGTTTGCCCCCACATGTCAATCGTACGTATGCCTTTTTCACTGTCGTATTAATATACATAAAACACTACTATTTATAAATGTCATTTCTGAAATTTACAGAAATCAAACCGGTTCCCCTTCTACTCTTT</canonical>
            <polymorphic>ATTCATTTTGCTTCCAACACGACAGTGCGATAATGCCTTTGCTTCCAACACGACAGTGCGATAATGCCTGTCACCAGAGGCATCTGCCAAAAACTCATGTCGTTTGGCTGGACTTTTTTTTTTGCACCCATCGAATTTTCCGGGCCTTACCCTTCTGAATGAATAGTTGTTTGGATCTCTTTGACATCATCTTGATAGAAAAGACTCCGAGTGAAAAGATCACATAAAAATGGAGTTTACCCACGTTTTCAATCGCAGCCCTCCTCGTTCTGAGCCGATGGAATCAAAAAATTACCAGTGCGTTACCAGACAACTATCAATAGTCATGGACGTTACATTCGTTGATCTAATCCCCTCCGCTTCGAGAAAAATTCCATCAAAATTTTGCCAAAATCGAAAGAAACTTATGCACCAACCTAATACTTCCTTCAAAATTGCGTTTCTACTCTGAACCAATTATCATTCCGACCAGGAATTTCAGCTGAAAAATTGATTGCCAWTTTTTTGTTTTTTTTAAATTTATTCTACGATCACTATTTCCAAAAAAAAATACCTCATTCCCATTTTGTTGACGCCAGAAATCTAAAAGTTTTTGATACTTTTTCCAAAGAATGCTCTTGGATCAGATCTGTTCTGTGAGTCATTCATTATTAGTTTTAGCTCCACTGATAATTATTAGTTTTAGCTCCACTGATAATAATTTTATTCAAAATGTTAATATTGTCATTGTTCCACATGAATATTATCATTGTTGCTACAATCCATCGCAAAAATCACCTTTTTCGCGAACAAAAAATCGCATAAAACTATTTTTTATGTTCCTCTTTTTGAAAGTTTTATGTTCAAATTTTAGTGTCGAAAAGTACCACACCGTTTGCCCCCACATGTCAATCGTACGTATGCCTTTTTCACTGTCGTATTAATATACATAAAACACTACTATTTATAAATGTCATTTCTGAAATTTACAGAAATCAAACCGGTTCCCCTTCTACTCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTGCGTTTCTACTCTGAAC</pcr_primer_p1>
		<pcr_primer_p2>TCAGTGGAGCTAAAACTAATAATG</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AAATTGCGTTTCTACTCTGAACCAATTATCATTCCGACCAGGAATTTCAGCTGAAAAATTGATTGCCATTTTTTTGTTTTTTTTAAATTTATTCTACGATCACTATTTCCAAAAAAAAATACCTCATTCCCATTTTGTTGACGCCAGAAATCTAAAAGTTTTTGATACTTTTTCCAAAGAATGCTCTTGGATCAGATCTGTTCTGTGAGTCATTCATTATTAGTTTTAGCTCCACTGA</canonical_amplicon>
		<polymorphic_amplicon>AAATTGCGTTTCTACTCTGAACCAATTATCATTCCGACCAGGAATTTCAGCTGAAAAATTGATTGCCAWTTTTTTGTTTTTTTTAAATTTATTCTACGATCACTATTTCCAAAAAAAAATACCTCATTCCCATTTTGTTGACGCCAGAAATCTAAAAGTTTTTGATACTTTTTCCAAAGAATGCTCTTGGATCAGATCTGTTCTGTGAGTCATTCATTATTAGTTTTAGCTCCACTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34860</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>118514</contig_pos>
        <strand></strand>
        <context>tacctcttta[T/A]aaagccgaga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CGTAAAATTACCAACAGTTAAGCAGTTTACAAAATTTTGATACCTCTTTA</left_flank>
        <right_flank>AAAGCCGAGATGATTGAGCTCAAAATTGACGGCTTGGGTGAGTTTCTAGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGACATCAAGACGTCGTCTGTTCGAATTTGTATATATGAGGAAAATAAGAAAATGTGGGGGAGGAAAAAAAACGGAAGTCTAGAAAAAATAAGCTAATTGCACAAAAAATGAAATTGGAAATTTCGCTTTTTTGAAAATTAATTTGAAGATCCATAAGATTTCGATAATTGAATCAAAATAAAGTAGAAACCTCATATCTGTGTTCCTTGAAAAGAGAACAAAAATTTGTCAACAGATGAAATGTTACTAGTAAAATTTGCAAAAATTTATCAGCTGACAAAATTTTGATATATCTTATATTCGTATAAATAATTGAACTTAAAGTACACGTGCGGATACCGCATTTGCTCTACATAATAGAAGAACACTTTATACATGCACTTTGAGCTCAATTATCTCGGTTCCTGTAAAAGATATCAAAGTTTTTTCAACTGATGAAATATTGCTCGTAAAATTACCAACAGTTAAGCAGTTTACAAAATTTTGATACCTCTTTATAAAGCCGAGATGATTGAGCTCAAAATTGACGGCTTGGGTGAGTTTCTAGCTGAGTAAATGAGTTATTTTCCATCTGTTTCTGAAACCCACTTCCGTTCTTTTGTGTTATAGAAGCGCACCCAAAACGTCAGCGTTGAGCTCAATTATCTCGGTTCCTTTCACAGATATCACAATTTTATCAACTAATAAAATGTGTGTTGTGAAATTACCAAAGTTTTATCAGTTTACCAGATTTTGATACCTCTTATGTTAACCGAGACAATTAAGCTTAAAGCGCACGTATGAAATGGTCTTCTATTATGTACAGAGTAATATATGGGCAATTGGAACTTACTTATCTTGATATCTGTAACAGATATCAAAAACTTGTTAACTGAGAAATCGATTATCATAATATCACCAACGTTTTATCTGTTGATCACTTTTTGATAACTTTTGAAAAAACCAAGATAATTGAACTCCAAGTTTGCGTCTAGGGTTGGCTTCTATTCAAGAAAATA</canonical>
            <polymorphic>GGGACATCAAGACGTCGTCTGTTCGAATTTGTATATATGAGGAAAATAAGAAAATGTGGGGGAGGAAAAAAAACGGAAGTCTAGAAAAAATAAGCTAATTGCACAAAAAATGAAATTGGAAATTTCGCTTTTTTGAAAATTAATTTGAAGATCCATAAGATTTCGATAATTGAATCAAAATAAAGTAGAAACCTCATATCTGTGTTCCTTGAAAAGAGAACAAAAATTTGTCAACAGATGAAATGTTACTAGTAAAATTTGCAAAAATTTATCAGCTGACAAAATTTTGATATATCTTATATTCGTATAAATAATTGAACTTAAAGTACACGTGCGGATACCGCATTTGCTCTACATAATAGAAGAACACTTTATACATGCACTTTGAGCTCAATTATCTCGGTTCCTGTAAAAGATATCAAAGTTTTTTCAACTGATGAAATATTGCTCGTAAAATTACCAACAGTTAAGCAGTTTACAAAATTTTGATACCTCTTTAWAAAGCCGAGATGATTGAGCTCAAAATTGACGGCTTGGGTGAGTTTCTAGCTGAGTAAATGAGTTATTTTCCATCTGTTTCTGAAACCCACTTCCGTTCTTTTGTGTTATAGAAGCGCACCCAAAACGTCAGCGTTGAGCTCAATTATCTCGGTTCCTTTCACAGATATCACAATTTTATCAACTAATAAAATGTGTGTTGTGAAATTACCAAAGTTTTATCAGTTTACCAGATTTTGATACCTCTTATGTTAACCGAGACAATTAAGCTTAAAGCGCACGTATGAAATGGTCTTCTATTATGTACAGAGTAATATATGGGCAATTGGAACTTACTTATCTTGATATCTGTAACAGATATCAAAAACTTGTTAACTGAGAAATCGATTATCATAATATCACCAACGTTTTATCTGTTGATCACTTTTTGATAACTTTTGAAAAAACCAAGATAATTGAACTCCAAGTTTGCGTCTAGGGTTGGCTTCTATTCAAGAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTAAAGTACACGTGCGGATA</pcr_primer_p1>
		<pcr_primer_p2>AGAAACAGATGGAAAATAACTCA</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>CTTAAAGTACACGTGCGGATACCGCATTTGCTCTACATAATAGAAGAACACTTTATACATGCACTTTGAGCTCAATTATCTCGGTTCCTGTAAAAGATATCAAAGTTTTTTCAACTGATGAAATATTGCTCGTAAAATTACCAACAGTTAAGCAGTTTACAAAATTTTGATACCTCTTTATAAAGCCGAGATGATTGAGCTCAAAATTGACGGCTTGGGTGAGTTTCTAGCTGAGTAAATGAGTTATTTTCCATCTGTTTCT</canonical_amplicon>
		<polymorphic_amplicon>CTTAAAGTACACGTGCGGATACCGCATTTGCTCTACATAATAGAAGAACACTTTATACATGCACTTTGAGCTCAATTATCTCGGTTCCTGTAAAAGATATCAAAGTTTTTTCAACTGATGAAATATTGCTCGTAAAATTACCAACAGTTAAGCAGTTTACAAAATTTTGATACCTCTTTAWAAAGCCGAGATGATTGAGCTCAAAATTGACGGCTTGGGTGAGTTTCTAGCTGAGTAAATGAGTTATTTTCCATCTGTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34861</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>118728</contig_pos>
        <strand></strand>
        <context>aattaccaaa[G/A]ttttatcagt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GATATCACAATTTTATCAACTAATAAAATGTGTGTTGTGAAATTACCAAA</left_flank>
        <right_flank>TTTTATCAGTTTACCAGATTTTGATACCTCTTATGTTAACCGAGACAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGAACAAAAATTTGTCAACAGATGAAATGTTACTAGTAAAATTTGCAAAAATTTATCAGCTGACAAAATTTTGATATATCTTATATTCGTATAAATAATTGAACTTAAAGTACACGTGCGGATACCGCATTTGCTCTACATAATAGAAGAACACTTTATACATGCACTTTGAGCTCAATTATCTCGGTTCCTGTAAAAGATATCAAAGTTTTTTCAACTGATGAAATATTGCTCGTAAAATTACCAACAGTTAAGCAGTTTACAAAATTTTGATACCTCTTTATAAAGCCGAGATGATTGAGCTCAAAATTGACGGCTTGGGTGAGTTTCTAGCTGAGTAAATGAGTTATTTTCCATCTGTTTCTGAAACCCACTTCCGTTCTTTTGTGTTATAGAAGCGCACCCAAAACGTCAGCGTTGAGCTCAATTATCTCGGTTCCTTTCACAGATATCACAATTTTATCAACTAATAAAATGTGTGTTGTGAAATTACCAAAGTTTTATCAGTTTACCAGATTTTGATACCTCTTATGTTAACCGAGACAATTAAGCTTAAAGCGCACGTATGAAATGGTCTTCTATTATGTACAGAGTAATATATGGGCAATTGGAACTTACTTATCTTGATATCTGTAACAGATATCAAAAACTTGTTAACTGAGAAATCGATTATCATAATATCACCAACGTTTTATCTGTTGATCACTTTTTGATAACTTTTGAAAAAACCAAGATAATTGAACTCCAAGTTTGCGTCTAGGGTTGGCTTCTATTCAAGAAAATATAAATAGTAACTGTGTATTGACGAAAAAAAGATAACACTGATTTTGTTTTTTCAATGAATCACCCAATTCCGAGAATTCGGAAACTTCAAGAATTTAGAAAACAATGAGCTAACATTATTTTATAGAAACGACAAAATTTTTTGAAACCAAATTATCCAAGCGACCATGGAAATGGCTCAAAGAAGTGAATAATTTCTGATCCAATTTAGAATA</canonical>
            <polymorphic>AGAGAACAAAAATTTGTCAACAGATGAAATGTTACTAGTAAAATTTGCAAAAATTTATCAGCTGACAAAATTTTGATATATCTTATATTCGTATAAATAATTGAACTTAAAGTACACGTGCGGATACCGCATTTGCTCTACATAATAGAAGAACACTTTATACATGCACTTTGAGCTCAATTATCTCGGTTCCTGTAAAAGATATCAAAGTTTTTTCAACTGATGAAATATTGCTCGTAAAATTACCAACAGTTAAGCAGTTTACAAAATTTTGATACCTCTTTATAAAGCCGAGATGATTGAGCTCAAAATTGACGGCTTGGGTGAGTTTCTAGCTGAGTAAATGAGTTATTTTCCATCTGTTTCTGAAACCCACTTCCGTTCTTTTGTGTTATAGAAGCGCACCCAAAACGTCAGCGTTGAGCTCAATTATCTCGGTTCCTTTCACAGATATCACAATTTTATCAACTAATAAAATGTGTGTTGTGAAATTACCAAARTTTTATCAGTTTACCAGATTTTGATACCTCTTATGTTAACCGAGACAATTAAGCTTAAAGCGCACGTATGAAATGGTCTTCTATTATGTACAGAGTAATATATGGGCAATTGGAACTTACTTATCTTGATATCTGTAACAGATATCAAAAACTTGTTAACTGAGAAATCGATTATCATAATATCACCAACGTTTTATCTGTTGATCACTTTTTGATAACTTTTGAAAAAACCAAGATAATTGAACTCCAAGTTTGCGTCTAGGGTTGGCTTCTATTCAAGAAAATATAAATAGTAACTGTGTATTGACGAAAAAAAGATAACACTGATTTTGTTTTTTCAATGAATCACCCAATTCCGAGAATTCGGAAACTTCAAGAATTTAGAAAACAATGAGCTAACATTATTTTATAGAAACGACAAAATTTTTTGAAACCAAATTATCCAAGCGACCATGGAAATGGCTCAAAGAAGTGAATAATTTCTGATCCAATTTAGAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTATTTTCCATCTGTTTCTGA</pcr_primer_p1>
		<pcr_primer_p2>GAATAGAAGCCAACCCTAGAC</pcr_primer_p2>
		<pcr_amplicon_size>431</pcr_amplicon_size>
		<canonical_amplicon>AGTTATTTTCCATCTGTTTCTGAAACCCACTTCCGTTCTTTTGTGTTATAGAAGCGCACCCAAAACGTCAGCGTTGAGCTCAATTATCTCGGTTCCTTTCACAGATATCACAATTTTATCAACTAATAAAATGTGTGTTGTGAAATTACCAAAGTTTTATCAGTTTACCAGATTTTGATACCTCTTATGTTAACCGAGACAATTAAGCTTAAAGCGCACGTATGAAATGGTCTTCTATTATGTACAGAGTAATATATGGGCAATTGGAACTTACTTATCTTGATATCTGTAACAGATATCAAAAACTTGTTAACTGAGAAATCGATTATCATAATATCACCAACGTTTTATCTGTTGATCACTTTTTGATAACTTTTGAAAAAACCAAGATAATTGAACTCCAAGTTTGCGTCTAGGGTTGGCTTCTATTC</canonical_amplicon>
		<polymorphic_amplicon>AGTTATTTTCCATCTGTTTCTGAAACCCACTTCCGTTCTTTTGTGTTATAGAAGCGCACCCAAAACGTCAGCGTTGAGCTCAATTATCTCGGTTCCTTTCACAGATATCACAATTTTATCAACTAATAAAATGTGTGTTGTGAAATTACCAAARTTTTATCAGTTTACCAGATTTTGATACCTCTTATGTTAACCGAGACAATTAAGCTTAAAGCGCACGTATGAAATGGTCTTCTATTATGTACAGAGTAATATATGGGCAATTGGAACTTACTTATCTTGATATCTGTAACAGATATCAAAAACTTGTTAACTGAGAAATCGATTATCATAATATCACCAACGTTTTATCTGTTGATCACTTTTTGATAACTTTTGAAAAAACCAAGATAATTGAACTCCAAGTTTGCGTCTAGGGTTGGCTTCTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34863</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>134727</contig_pos>
        <strand>+</strand>
        <context>AAGTTTCCCA[C/T]TTCTGACGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAACTCACCACTAGTTCATTACCTACGTCTGTTAAGGCAAGTTTCCCA</left_flank>
        <right_flank>TTCTGACGATAATAATCAAAATTCCAAGTTCGCAGGCAGTTTTCACTTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATCCTATAAAAAGATATTTAAAAACATTTTGTCGTCTCAAACGTAAGCCCACATATTATCCAAAGCGGTTAACCTGGCTTTCGATTACCGTTTTTCACCAAAAACTCGATAGTCAAAGGAAACATTGAAAAATTAGTTAAAGTTCGGTGGGGCGCGTTTGGAAAGCTTAGGCGCCAGATGCGAAATTTGAAAATTGATGAAATAATAAACGTTTTTGAGAGAGAAAAAAACGGAAATGATAATAGGAAACAATAAAAAGAACGGTCCTAAAATAGCTAAAGTATGAAAAATCTAAACCAAGCTGTCTTGTTGAATGGCTGAAACTCCACCGGAACAGAAGAATCCAACGAAATCGCTTTATTTCCTGACTAAGACTGGATTTGAACGGAAGATTTCGAATCAATGTGTATCTGGGCGTAGTGTCAGTTTCCGAAGCTACATCTGTTCTGAAACTCACCACTAGTTCATTACCTACGTCTGTTAAGGCAAGTTTCCCACTTCTGACGATAATAATCAAAATTCCAAGTTCGCAGGCAGTTTTCACTTCAGAAGCACTACTTCCATCAGCCAGCAATAGCTGTATTATCCGATGGAGCGTGTGAAGACAATACAACGCTTTGAAAATCGAAAATAATAAAGTGTTTAAAAAACACTATGTTGAAAGCCAAAAACCGTGTCATAACACAGAATTTATAGCAAATCAATCAATTTTCGGGTAGTTCTGGGCCCCAATGATCAACGTATTCTCCAAGGTACAGACTAATCCATGACGTGTTTCGAAGAAGATAATTTATGGATTTTCTTCCCAGTTCACTAAGTTTTTCTCTGTTTTCAGACTTCTCAATAGACATATCGTACCTTATTGCAAATCGGTACTCAACAACAGGTATCGAAGCATTTCAAGCTGCTCACAATGCTGATTTTGGTCCTGAGACACGTTTGTCAAGAGAATATACACCTGTTTCAAAAAGTCTTGCTTTAATCAAACCACATTCCTG</canonical>
            <polymorphic>AAATCCTATAAAAAGATATTTAAAAACATTTTGTCGTCTCAAACGTAAGCCCACATATTATCCAAAGCGGTTAACCTGGCTTTCGATTACCGTTTTTCACCAAAAACTCGATAGTCAAAGGAAACATTGAAAAATTAGTTAAAGTTCGGTGGGGCGCGTTTGGAAAGCTTAGGCGCCAGATGCGAAATTTGAAAATTGATGAAATAATAAACGTTTTTGAGAGAGAAAAAAACGGAAATGATAATAGGAAACAATAAAAAGAACGGTCCTAAAATAGCTAAAGTATGAAAAATCTAAACCAAGCTGTCTTGTTGAATGGCTGAAACTCCACCGGAACAGAAGAATCCAACGAAATCGCTTTATTTCCTGACTAAGACTGGATTTGAACGGAAGATTTCGAATCAATGTGTATCTGGGCGTAGTGTCAGTTTCCGAAGCTACATCTGTTCTGAAACTCACCACTAGTTCATTACCTACGTCTGTTAAGGCAAGTTTCCCAYTTCTGACGATAATAATCAAAATTCCAAGTTCGCAGGCAGTTTTCACTTCAGAAGCACTACTTCCATCAGCCAGCAATAGCTGTATTATCCGATGGAGCGTGTGAAGACAATACAACGCTTTGAAAATCGAAAATAATAAAGTGTTTAAAAAACACTATGTTGAAAGCCAAAAACCGTGTCATAACACAGAATTTATAGCAAATCAATCAATTTTCGGGTAGTTCTGGGCCCCAATGATCAACGTATTCTCCAAGGTACAGACTAATCCATGACGTGTTTCGAAGAAGATAATTTATGGATTTTCTTCCCAGTTCACTAAGTTTTTCTCTGTTTTCAGACTTCTCAATAGACATATCGTACCTTATTGCAAATCGGTACTCAACAACAGGTATCGAAGCATTTCAAGCTGCTCACAATGCTGATTTTGGTCCTGAGACACGTTTGTCAAGAGAATATACACCTGTTTCAAAAAGTCTTGCTTTAATCAAACCACATTCCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>179 98 90 79 53 52 46 46 45 40 39 38 34 33 25 24 21 15 11 11 8 8 3 2</canonical_bands>
                <polymorphic_bands>179 98 90 84 79 53 52 46 45 40 39 34 33 25 24 21 15 11 11 8 8 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTGTTCTGAAACTCACCACTA</pcr_primer_p1>
		<pcr_primer_p2>CTGTGTTATGACACGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATCTGTTCTGAAACTCACCACTAGTTCATTACCTACGTCTGTTAAGGCAAGTTTCCCACTTCTGACGATAATAATCAAAATTCCAAGTTCGCAGGCAGTTTTCACTTCAGAAGCACTACTTCCATCAGCCAGCAATAGCTGTATTATCCGATGGAGCGTGTGAAGACAATACAACGCTTTGAAAATCGAAAATAATAAAGTGTTTAAAAAACACTATGTTGAAAGCCAAAAACCGTGTCATAACACAG</canonical_amplicon>
		<polymorphic_amplicon>ATCTGTTCTGAAACTCACCACTAGTTCATTACCTACGTCTGTTAAGGCAAGTTTCCCAYTTCTGACGATAATAATCAAAATTCCAAGTTCGCAGGCAGTTTTCACTTCAGAAGCACTACTTCCATCAGCCAGCAATAGCTGTATTATCCGATGGAGCGTGTGAAGACAATACAACGCTTTGAAAATCGAAAATAATAAAGTGTTTAAAAAACACTATGTTGAAAGCCAAAAACCGTGTCATAACACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34864</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>137116</contig_pos>
        <strand></strand>
        <context>CTGCAATTAA[G/A]AAACTATACA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AACCGTATCTAACAGGAAAAAAATCAACACGTGTTTTTCCCTGCAATTAA</left_flank>
        <right_flank>AAACTATACAGAACTTCAGAAACTATGGGACATTTCAAAAACTATACGAC</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTCAAACACGAAGAGAGATAAAAATTAAAAAATATGCGATCTAATAGACACTAAACACAGCTCTCTAAAAAAAATGTTGGTCTGGTACACCATTTAGAAAACCAGAAATTTAGCCTTCAAAACAACACTGCGAAAAAGAAAGAAACTTTCGGTTCAACCTAATATTTGGAAAATTGTTGTTTTTTATCGGGATGTGTTCCATTCGAGAAATTATGCGTCTCCCACACATATTATATAATTTTTTTCACAGCGATGTAATCATCTCTATGTAATCATCATATCTCATTTTCTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTTAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAACCGTATCTAACAGGAAAAAAATCAACACGTGTTTTTCCCTGCAATTAAGAAACTATACAGAACTTCAGAAACTATGGGACATTTCAAAAACTATACGACACTATACGATACTAAACTGTGAGCCAATCAGATTGCTTTTTAAGGAGAGCACTCTCTTGTTTTTTTTCACAATTTCTAGTCATTGATCATCTACTTCAAGTCTTCTAATAACCGATTCTTCTGACAAGCGAGTTGGTTTTCAGTTTCATTATCAAAAGTCCAGCATGCTTTCTAATTTTATGCTCTCTTGAGAAATCGATGGTCTTTCTTATAGCTTTCTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTGCATCTTAGACACAATATGAGACTGTGAGAAATATAAAGACTAACGAACAACGGGACAATAGAAAAATTTGAATATTTGTGGGCGGAGGAGTTTAGCACATCACCATCTTCAGAATTTGGATGTATATAAAAGGATCGTTTCAGCCAAATAGAAACAATCTTCAAGTCAAATCGGAATACGTCGTTTCAAAGAATG</canonical>
            <polymorphic>TTCTCAAACACGAAGAGAGATAAAAATTAAAAAATATGCGATCTAATAGACACTAAACACAGCTCTCTAAAAAAAATGTTGGTCTGGTACACCATTTAGAAAACCAGAAATTTAGCCTTCAAAACAACACTGCGAAAAAGAAAGAAACTTTCGGTTCAACCTAATATTTGGAAAATTGTTGTTTTTTATCGGGATGTGTTCCATTCGAGAAATTATGCGTCTCCCACACATATTATATAATTTTTTTCACAGCGATGTAATCATCTCTATGTAATCATCATATCTCATTTTCTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTTAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAACCGTATCTAACAGGAAAAAAATCAACACGTGTTTTTCCCTGCAATTAARAAACTATACAGAACTTCAGAAACTATGGGACATTTCAAAAACTATACGACACTATACGATACTAAACTGTGAGCCAATCAGATTGCTTTTTAAGGAGAGCACTCTCTTGTTTTTTTTCACAATTTCTAGTCATTGATCATCTACTTCAAGTCTTCTAATAACCGATTCTTCTGACAAGCGAGTTGGTTTTCAGTTTCATTATCAAAAGTCCAGCATGCTTTCTAATTTTATGCTCTCTTGAGAAATCGATGGTCTTTCTTATAGCTTTCTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTGCATCTTAGACACAATATGAGACTGTGAGAAATATAAAGACTAACGAACAACGGGACAATAGAAAAATTTGAATATTTGTGGGCGGAGGAGTTTAGCACATCACCATCTTCAGAATTTGGATGTATATAAAAGGATCGTTTCAGCCAAATAGAAACAATCTTCAAGTCAAATCGGAATACGTCGTTTCAAAGAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGATGTAATCATCTCTATGTAATCA</pcr_primer_p1>
		<pcr_primer_p2>CGTATAGTGTCGTATAGTTTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>306</pcr_amplicon_size>
		<canonical_amplicon>CGATGTAATCATCTCTATGTAATCATCATATCTCATTTTCTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTTAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAACCGTATCTAACAGGAAAAAAATCAACACGTGTTTTTCCCTGCAATTAAGAAACTATACAGAACTTCAGAAACTATGGGACATTTCAAAAACTATACGACACTATACG</canonical_amplicon>
		<polymorphic_amplicon>CGATGTAATCATCTCTATGTAATCATCATATCTCATTTTCTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTTAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAACCGTATCTAACAGGAAAAAAATCAACACGTGTTTTTCCCTGCAATTAARAAACTATACAGAACTTCAGAAACTATGGGACATTTCAAAAACTATACGACACTATACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34865</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>137242</contig_pos>
        <strand></strand>
        <context>TTCACAATTT[C/T]TAGTCATTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCAGATTGCTTTTTAAGGAGAGCACTCTCTTGTTTTTTTTCACAATTT</left_flank>
        <right_flank>TAGTCATTGATCATCTACTTCAAGTCTTCTAATAACCGATTCTTCTGACA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACTGCGAAAAAGAAAGAAACTTTCGGTTCAACCTAATATTTGGAAAATTGTTGTTTTTTATCGGGATGTGTTCCATTCGAGAAATTATGCGTCTCCCACACATATTATATAATTTTTTTCACAGCGATGTAATCATCTCTATGTAATCATCATATCTCATTTTCTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTTAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAACCGTATCTAACAGGAAAAAAATCAACACGTGTTTTTCCCTGCAATTAAGAAACTATACAGAACTTCAGAAACTATGGGACATTTCAAAAACTATACGACACTATACGATACTAAACTGTGAGCCAATCAGATTGCTTTTTAAGGAGAGCACTCTCTTGTTTTTTTTCACAATTTCTAGTCATTGATCATCTACTTCAAGTCTTCTAATAACCGATTCTTCTGACAAGCGAGTTGGTTTTCAGTTTCATTATCAAAAGTCCAGCATGCTTTCTAATTTTATGCTCTCTTGAGAAATCGATGGTCTTTCTTATAGCTTTCTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTGCATCTTAGACACAATATGAGACTGTGAGAAATATAAAGACTAACGAACAACGGGACAATAGAAAAATTTGAATATTTGTGGGCGGAGGAGTTTAGCACATCACCATCTTCAGAATTTGGATGTATATAAAAGGATCGTTTCAGCCAAATAGAAACAATCTTCAAGTCAAATCGGAATACGTCGTTTCAAAGAATGTTTGAATGTTCGAGAAATTCTTGTTGTGGCATCCATATTCGCAATCGGGAACTATCTACTACCAACTCCGACCATTGAAGGTTAGTTTTTGACGAAGTTCTAGGAAAACAAAAAATGTAGTCGACG</canonical>
            <polymorphic>ACACTGCGAAAAAGAAAGAAACTTTCGGTTCAACCTAATATTTGGAAAATTGTTGTTTTTTATCGGGATGTGTTCCATTCGAGAAATTATGCGTCTCCCACACATATTATATAATTTTTTTCACAGCGATGTAATCATCTCTATGTAATCATCATATCTCATTTTCTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTTAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAACCGTATCTAACAGGAAAAAAATCAACACGTGTTTTTCCCTGCAATTAAGAAACTATACAGAACTTCAGAAACTATGGGACATTTCAAAAACTATACGACACTATACGATACTAAACTGTGAGCCAATCAGATTGCTTTTTAAGGAGAGCACTCTCTTGTTTTTTTTCACAATTTYTAGTCATTGATCATCTACTTCAAGTCTTCTAATAACCGATTCTTCTGACAAGCGAGTTGGTTTTCAGTTTCATTATCAAAAGTCCAGCATGCTTTCTAATTTTATGCTCTCTTGAGAAATCGATGGTCTTTCTTATAGCTTTCTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTGCATCTTAGACACAATATGAGACTGTGAGAAATATAAAGACTAACGAACAACGGGACAATAGAAAAATTTGAATATTTGTGGGCGGAGGAGTTTAGCACATCACCATCTTCAGAATTTGGATGTATATAAAAGGATCGTTTCAGCCAAATAGAAACAATCTTCAAGTCAAATCGGAATACGTCGTTTCAAAGAATGTTTGAATGTTCGAGAAATTCTTGTTGTGGCATCCATATTCGCAATCGGGAACTATCTACTACCAACTCCGACCATTGAAGGTTAGTTTTTGACGAAGTTCTAGGAAAACAAAAAATGTAGTCGACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>474 270 193 37 26</canonical_bands>
                <polymorphic_bands>744 193 37 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACTAAACTGTGAGCCAATCAG</pcr_primer_p1>
		<pcr_primer_p2>CAGAAGAATAGCACAAAGAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATACTAAACTGTGAGCCAATCAGATTGCTTTTTAAGGAGAGCACTCTCTTGTTTTTTTTCACAATTTCTAGTCATTGATCATCTACTTCAAGTCTTCTAATAACCGATTCTTCTGACAAGCGAGTTGGTTTTCAGTTTCATTATCAAAAGTCCAGCATGCTTTCTAATTTTATGCTCTCTTGAGAAATCGATGGTCTTTCTTATAGCTTTCTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTG</canonical_amplicon>
		<polymorphic_amplicon>ATACTAAACTGTGAGCCAATCAGATTGCTTTTTAAGGAGAGCACTCTCTTGTTTTTTTTCACAATTTYTAGTCATTGATCATCTACTTCAAGTCTTCTAATAACCGATTCTTCTGACAAGCGAGTTGGTTTTCAGTTTCATTATCAAAAGTCCAGCATGCTTTCTAATTTTATGCTCTCTTGAGAAATCGATGGTCTTTCTTATAGCTTTCTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34866</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>137255</contig_pos>
        <strand></strand>
        <context>GTCATTGATC[A/C]TCTACTTCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTAAGGAGAGCACTCTCTTGTTTTTTTTCACAATTTCTAGTCATTGATC</left_flank>
        <right_flank>TCTACTTCAAGTCTTCTAATAACCGATTCTTCTGACAAGCGAGTTGGTTT</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAGAAACTTTCGGTTCAACCTAATATTTGGAAAATTGTTGTTTTTTATCGGGATGTGTTCCATTCGAGAAATTATGCGTCTCCCACACATATTATATAATTTTTTTCACAGCGATGTAATCATCTCTATGTAATCATCATATCTCATTTTCTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTTAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAACCGTATCTAACAGGAAAAAAATCAACACGTGTTTTTCCCTGCAATTAAGAAACTATACAGAACTTCAGAAACTATGGGACATTTCAAAAACTATACGACACTATACGATACTAAACTGTGAGCCAATCAGATTGCTTTTTAAGGAGAGCACTCTCTTGTTTTTTTTCACAATTTCTAGTCATTGATCATCTACTTCAAGTCTTCTAATAACCGATTCTTCTGACAAGCGAGTTGGTTTTCAGTTTCATTATCAAAAGTCCAGCATGCTTTCTAATTTTATGCTCTCTTGAGAAATCGATGGTCTTTCTTATAGCTTTCTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTGCATCTTAGACACAATATGAGACTGTGAGAAATATAAAGACTAACGAACAACGGGACAATAGAAAAATTTGAATATTTGTGGGCGGAGGAGTTTAGCACATCACCATCTTCAGAATTTGGATGTATATAAAAGGATCGTTTCAGCCAAATAGAAACAATCTTCAAGTCAAATCGGAATACGTCGTTTCAAAGAATGTTTGAATGTTCGAGAAATTCTTGTTGTGGCATCCATATTCGCAATCGGGAACTATCTACTACCAACTCCGACCATTGAAGGTTAGTTTTTGACGAAGTTCTAGGAAAACAAAAAATGTAGTCGACGTCTCAGCTAAAAA</canonical>
            <polymorphic>GAAAGAAACTTTCGGTTCAACCTAATATTTGGAAAATTGTTGTTTTTTATCGGGATGTGTTCCATTCGAGAAATTATGCGTCTCCCACACATATTATATAATTTTTTTCACAGCGATGTAATCATCTCTATGTAATCATCATATCTCATTTTCTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTTAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAACCGTATCTAACAGGAAAAAAATCAACACGTGTTTTTCCCTGCAATTAAGAAACTATACAGAACTTCAGAAACTATGGGACATTTCAAAAACTATACGACACTATACGATACTAAACTGTGAGCCAATCAGATTGCTTTTTAAGGAGAGCACTCTCTTGTTTTTTTTCACAATTTCTAGTCATTGATCMTCTACTTCAAGTCTTCTAATAACCGATTCTTCTGACAAGCGAGTTGGTTTTCAGTTTCATTATCAAAAGTCCAGCATGCTTTCTAATTTTATGCTCTCTTGAGAAATCGATGGTCTTTCTTATAGCTTTCTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTGCATCTTAGACACAATATGAGACTGTGAGAAATATAAAGACTAACGAACAACGGGACAATAGAAAAATTTGAATATTTGTGGGCGGAGGAGTTTAGCACATCACCATCTTCAGAATTTGGATGTATATAAAAGGATCGTTTCAGCCAAATAGAAACAATCTTCAAGTCAAATCGGAATACGTCGTTTCAAAGAATGTTTGAATGTTCGAGAAATTCTTGTTGTGGCATCCATATTCGCAATCGGGAACTATCTACTACCAACTCCGACCATTGAAGGTTAGTTTTTGACGAAGTTCTAGGAAAACAAAAAATGTAGTCGACGTCTCAGCTAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACTAAACTGTGAGCCAATCAG</pcr_primer_p1>
		<pcr_primer_p2>CAGAAGAATAGCACAAAGAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATACTAAACTGTGAGCCAATCAGATTGCTTTTTAAGGAGAGCACTCTCTTGTTTTTTTTCACAATTTCTAGTCATTGATCATCTACTTCAAGTCTTCTAATAACCGATTCTTCTGACAAGCGAGTTGGTTTTCAGTTTCATTATCAAAAGTCCAGCATGCTTTCTAATTTTATGCTCTCTTGAGAAATCGATGGTCTTTCTTATAGCTTTCTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTG</canonical_amplicon>
		<polymorphic_amplicon>ATACTAAACTGTGAGCCAATCAGATTGCTTTTTAAGGAGAGCACTCTCTTGTTTTTTTTCACAATTTCTAGTCATTGATCMTCTACTTCAAGTCTTCTAATAACCGATTCTTCTGACAAGCGAGTTGGTTTTCAGTTTCATTATCAAAAGTCCAGCATGCTTTCTAATTTTATGCTCTCTTGAGAAATCGATGGTCTTTCTTATAGCTTTCTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34867</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>137340</contig_pos>
        <strand></strand>
        <context>CATGCTTTCT[A/G]ATTTTATGCY</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAAGCGAGTTGGTTTTCAGTTTCATTATCAAAAGTCCAGCATGCTTTCT</left_flank>
        <right_flank>ATTTTATGCTCTCTTGAGAAATCGATGGTCTTTCTTATAGCTTTCTATTC</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACACATATTATATAATTTTTTTCACAGCGATGTAATCATCTCTATGTAATCATCATATCTCATTTTCTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTTAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAACCGTATCTAACAGGAAAAAAATCAACACGTGTTTTTCCCTGCAATTAAGAAACTATACAGAACTTCAGAAACTATGGGACATTTCAAAAACTATACGACACTATACGATACTAAACTGTGAGCCAATCAGATTGCTTTTTAAGGAGAGCACTCTCTTGTTTTTTTTCACAATTTCTAGTCATTGATCATCTACTTCAAGTCTTCTAATAACCGATTCTTCTGACAAGCGAGTTGGTTTTCAGTTTCATTATCAAAAGTCCAGCATGCTTTCTAATTTTATGCTCTCTTGAGAAATCGATGGTCTTTCTTATAGCTTTCTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTGCATCTTAGACACAATATGAGACTGTGAGAAATATAAAGACTAACGAACAACGGGACAATAGAAAAATTTGAATATTTGTGGGCGGAGGAGTTTAGCACATCACCATCTTCAGAATTTGGATGTATATAAAAGGATCGTTTCAGCCAAATAGAAACAATCTTCAAGTCAAATCGGAATACGTCGTTTCAAAGAATGTTTGAATGTTCGAGAAATTCTTGTTGTGGCATCCATATTCGCAATCGGGAACTATCTACTACCAACTCCGACCATTGAAGGTTAGTTTTTGACGAAGTTCTAGGAAAACAAAAAATGTAGTCGACGTCTCAGCTAAAAAATGGCAGGGAGGTTGTTTATTACTTTGAGCCATAAATTTTTGTTCCAGAACTACCTCAAAACCCATAAAACAAAATTGAAGTAGC</canonical>
            <polymorphic>CACACATATTATATAATTTTTTTCACAGCGATGTAATCATCTCTATGTAATCATCATATCTCATTTTCTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTTAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAACCGTATCTAACAGGAAAAAAATCAACACGTGTTTTTCCCTGCAATTAAGAAACTATACAGAACTTCAGAAACTATGGGACATTTCAAAAACTATACGACACTATACGATACTAAACTGTGAGCCAATCAGATTGCTTTTTAAGGAGAGCACTCTCTTGTTTTTTTTCACAATTTCTAGTCATTGATCATCTACTTCAAGTCTTCTAATAACCGATTCTTCTGACAAGCGAGTTGGTTTTCAGTTTCATTATCAAAAGTCCAGCATGCTTTCTRATTTTATGCTCTCTTGAGAAATCGATGGTCTTTCTTATAGCTTTCTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTGCATCTTAGACACAATATGAGACTGTGAGAAATATAAAGACTAACGAACAACGGGACAATAGAAAAATTTGAATATTTGTGGGCGGAGGAGTTTAGCACATCACCATCTTCAGAATTTGGATGTATATAAAAGGATCGTTTCAGCCAAATAGAAACAATCTTCAAGTCAAATCGGAATACGTCGTTTCAAAGAATGTTTGAATGTTCGAGAAATTCTTGTTGTGGCATCCATATTCGCAATCGGGAACTATCTACTACCAACTCCGACCATTGAAGGTTAGTTTTTGACGAAGTTCTAGGAAAACAAAAAATGTAGTCGACGTCTCAGCTAAAAAATGGCAGGGAGGTTGTTTATTACTTTGAGCCATAAATTTTTGTTCCAGAACTACCTCAAAACCCATAAAACAAAATTGAAGTAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>255 158 146 127 103 98 48 39 14 12</canonical_bands>
                <polymorphic_bands>255 249 158 127 98 48 39 14 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACTAAACTGTGAGCCAATCAG</pcr_primer_p1>
		<pcr_primer_p2>CAGAAGAATAGCACAAAGAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATACTAAACTGTGAGCCAATCAGATTGCTTTTTAAGGAGAGCACTCTCTTGTTTTTTTTCACAATTTCTAGTCATTGATCATCTACTTCAAGTCTTCTAATAACCGATTCTTCTGACAAGCGAGTTGGTTTTCAGTTTCATTATCAAAAGTCCAGCATGCTTTCTAATTTTATGCTCTCTTGAGAAATCGATGGTCTTTCTTATAGCTTTCTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTG</canonical_amplicon>
		<polymorphic_amplicon>ATACTAAACTGTGAGCCAATCAGATTGCTTTTTAAGGAGAGCACTCTCTTGTTTTTTTTCACAATTTCTAGTCATTGATCATCTACTTCAAGTCTTCTAATAACCGATTCTTCTGACAAGCGAGTTGGTTTTCAGTTTCATTATCAAAAGTCCAGCATGCTTTCTRATTTTATGCTCTCTTGAGAAATCGATGGTCTTTCTTATAGCTTTCTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34868</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>137350</contig_pos>
        <strand></strand>
        <context>RATTTTATGC[T/C]CTCTTGAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGGTTTTCAGTTTCATTATCAAAAGTCCAGCATGCTTTCTAATTTTATGC</left_flank>
        <right_flank>CTCTTGAGAAATCGATGGTCTTTCTTATAGCTTTCTATTCAACGTCAGCT</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATAATTTTTTTCACAGCGATGTAATCATCTCTATGTAATCATCATATCTCATTTTCTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTTAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAACCGTATCTAACAGGAAAAAAATCAACACGTGTTTTTCCCTGCAATTAAGAAACTATACAGAACTTCAGAAACTATGGGACATTTCAAAAACTATACGACACTATACGATACTAAACTGTGAGCCAATCAGATTGCTTTTTAAGGAGAGCACTCTCTTGTTTTTTTTCACAATTTCTAGTCATTGATCATCTACTTCAAGTCTTCTAATAACCGATTCTTCTGACAAGCGAGTTGGTTTTCAGTTTCATTATCAAAAGTCCAGCATGCTTTCTAATTTTATGCTCTCTTGAGAAATCGATGGTCTTTCTTATAGCTTTCTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTGCATCTTAGACACAATATGAGACTGTGAGAAATATAAAGACTAACGAACAACGGGACAATAGAAAAATTTGAATATTTGTGGGCGGAGGAGTTTAGCACATCACCATCTTCAGAATTTGGATGTATATAAAAGGATCGTTTCAGCCAAATAGAAACAATCTTCAAGTCAAATCGGAATACGTCGTTTCAAAGAATGTTTGAATGTTCGAGAAATTCTTGTTGTGGCATCCATATTCGCAATCGGGAACTATCTACTACCAACTCCGACCATTGAAGGTTAGTTTTTGACGAAGTTCTAGGAAAACAAAAAATGTAGTCGACGTCTCAGCTAAAAAATGGCAGGGAGGTTGTTTATTACTTTGAGCCATAAATTTTTGTTCCAGAACTACCTCAAAACCCATAAAACAAAATTGAAGTAGCCGTCATTTTA</canonical>
            <polymorphic>ATATAATTTTTTTCACAGCGATGTAATCATCTCTATGTAATCATCATATCTCATTTTCTGTGAAAGATATCAAAAAGTGGCTAACTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTTAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAACCGTATCTAACAGGAAAAAAATCAACACGTGTTTTTCCCTGCAATTAAGAAACTATACAGAACTTCAGAAACTATGGGACATTTCAAAAACTATACGACACTATACGATACTAAACTGTGAGCCAATCAGATTGCTTTTTAAGGAGAGCACTCTCTTGTTTTTTTTCACAATTTCTAGTCATTGATCATCTACTTCAAGTCTTCTAATAACCGATTCTTCTGACAAGCGAGTTGGTTTTCAGTTTCATTATCAAAAGTCCAGCATGCTTTCTAATTTTATGCYCTCTTGAGAAATCGATGGTCTTTCTTATAGCTTTCTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTGCATCTTAGACACAATATGAGACTGTGAGAAATATAAAGACTAACGAACAACGGGACAATAGAAAAATTTGAATATTTGTGGGCGGAGGAGTTTAGCACATCACCATCTTCAGAATTTGGATGTATATAAAAGGATCGTTTCAGCCAAATAGAAACAATCTTCAAGTCAAATCGGAATACGTCGTTTCAAAGAATGTTTGAATGTTCGAGAAATTCTTGTTGTGGCATCCATATTCGCAATCGGGAACTATCTACTACCAACTCCGACCATTGAAGGTTAGTTTTTGACGAAGTTCTAGGAAAACAAAAAATGTAGTCGACGTCTCAGCTAAAAAATGGCAGGGAGGTTGTTTATTACTTTGAGCCATAAATTTTTGTTCCAGAACTACCTCAAAACCCATAAAACAAAATTGAAGTAGCCGTCATTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACTAAACTGTGAGCCAATCAG</pcr_primer_p1>
		<pcr_primer_p2>CAGAAGAATAGCACAAAGAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATACTAAACTGTGAGCCAATCAGATTGCTTTTTAAGGAGAGCACTCTCTTGTTTTTTTTCACAATTTCTAGTCATTGATCATCTACTTCAAGTCTTCTAATAACCGATTCTTCTGACAAGCGAGTTGGTTTTCAGTTTCATTATCAAAAGTCCAGCATGCTTTCTAATTTTATGCTCTCTTGAGAAATCGATGGTCTTTCTTATAGCTTTCTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTG</canonical_amplicon>
		<polymorphic_amplicon>ATACTAAACTGTGAGCCAATCAGATTGCTTTTTAAGGAGAGCACTCTCTTGTTTTTTTTCACAATTTCTAGTCATTGATCATCTACTTCAAGTCTTCTAATAACCGATTCTTCTGACAAGCGAGTTGGTTTTCAGTTTCATTATCAAAAGTCCAGCATGCTTTCTAATTTTATGCYCTCTTGAGAAATCGATGGTCTTTCTTATAGCTTTCTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34869</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>137443</contig_pos>
        <strand></strand>
        <context>CAATATGAGA[C/T]TGTGAGAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTCAGCTTTTCTTTGTGCTATTCTTCTGCATCTTAGACACAATATGAGA</left_flank>
        <right_flank>TGTGAGAAATATAAAGACTAACGAACAACGGGACAATAGAAAAATTTGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTTAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAACCGTATCTAACAGGAAAAAAATCAACACGTGTTTTTCCCTGCAATTAAGAAACTATACAGAACTTCAGAAACTATGGGACATTTCAAAAACTATACGACACTATACGATACTAAACTGTGAGCCAATCAGATTGCTTTTTAAGGAGAGCACTCTCTTGTTTTTTTTCACAATTTCTAGTCATTGATCATCTACTTCAAGTCTTCTAATAACCGATTCTTCTGACAAGCGAGTTGGTTTTCAGTTTCATTATCAAAAGTCCAGCATGCTTTCTAATTTTATGCTCTCTTGAGAAATCGATGGTCTTTCTTATAGCTTTCTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTGCATCTTAGACACAATATGAGACTGTGAGAAATATAAAGACTAACGAACAACGGGACAATAGAAAAATTTGAATATTTGTGGGCGGAGGAGTTTAGCACATCACCATCTTCAGAATTTGGATGTATATAAAAGGATCGTTTCAGCCAAATAGAAACAATCTTCAAGTCAAATCGGAATACGTCGTTTCAAAGAATGTTTGAATGTTCGAGAAATTCTTGTTGTGGCATCCATATTCGCAATCGGGAACTATCTACTACCAACTCCGACCATTGAAGGTTAGTTTTTGACGAAGTTCTAGGAAAACAAAAAATGTAGTCGACGTCTCAGCTAAAAAATGGCAGGGAGGTTGTTTATTACTTTGAGCCATAAATTTTTGTTCCAGAACTACCTCAAAACCCATAAAACAAAATTGAAGTAGCCGTCATTTTAATGTAACACATTTTCAGAACACCCGACGGAACACAAATGCTCCGTGATTCAGTACCGAACGGCTGCAAATATTACTCGTCCTTCTTGGAAAGC</canonical>
            <polymorphic>TGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTTAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAACCGTATCTAACAGGAAAAAAATCAACACGTGTTTTTCCCTGCAATTAAGAAACTATACAGAACTTCAGAAACTATGGGACATTTCAAAAACTATACGACACTATACGATACTAAACTGTGAGCCAATCAGATTGCTTTTTAAGGAGAGCACTCTCTTGTTTTTTTTCACAATTTCTAGTCATTGATCATCTACTTCAAGTCTTCTAATAACCGATTCTTCTGACAAGCGAGTTGGTTTTCAGTTTCATTATCAAAAGTCCAGCATGCTTTCTAATTTTATGCTCTCTTGAGAAATCGATGGTCTTTCTTATAGCTTTCTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTGCATCTTAGACACAATATGAGAYTGTGAGAAATATAAAGACTAACGAACAACGGGACAATAGAAAAATTTGAATATTTGTGGGCGGAGGAGTTTAGCACATCACCATCTTCAGAATTTGGATGTATATAAAAGGATCGTTTCAGCCAAATAGAAACAATCTTCAAGTCAAATCGGAATACGTCGTTTCAAAGAATGTTTGAATGTTCGAGAAATTCTTGTTGTGGCATCCATATTCGCAATCGGGAACTATCTACTACCAACTCCGACCATTGAAGGTTAGTTTTTGACGAAGTTCTAGGAAAACAAAAAATGTAGTCGACGTCTCAGCTAAAAAATGGCAGGGAGGTTGTTTATTACTTTGAGCCATAAATTTTTGTTCCAGAACTACCTCAAAACCCATAAAACAAAATTGAAGTAGCCGTCATTTTAATGTAACACATTTTCAGAACACCCGACGGAACACAAATGCTCCGTGATTCAGTACCGAACGGCTGCAAATATTACTCGTCCTTCTTGGAAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>499 260 120 115 6</canonical_bands>
                <polymorphic_bands>759 120 115 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTCAACGTCAGCTTTTCTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTCTCGAACATTCAAACATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTGCATCTTAGACACAATATGAGACTGTGAGAAATATAAAGACTAACGAACAACGGGACAATAGAAAAATTTGAATATTTGTGGGCGGAGGAGTTTAGCACATCACCATCTTCAGAATTTGGATGTATATAAAAGGATCGTTTCAGCCAAATAGAAACAATCTTCAAGTCAAATCGGAATACGTCGTTTCAAAGAATGTTTGAATGTTCGAGAAAT</canonical_amplicon>
		<polymorphic_amplicon>CTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTGCATCTTAGACACAATATGAGAYTGTGAGAAATATAAAGACTAACGAACAACGGGACAATAGAAAAATTTGAATATTTGTGGGCGGAGGAGTTTAGCACATCACCATCTTCAGAATTTGGATGTATATAAAAGGATCGTTTCAGCCAAATAGAAACAATCTTCAAGTCAAATCGGAATACGTCGTTTCAAAGAATGTTTGAATGTTCGAGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34870</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>137488</contig_pos>
        <strand></strand>
        <context>AATAGAAAAA[T/A]TTGAATATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGAGACTGTGAGAAATATAAAGACTAACGAACAACGGGACAATAGAAAAA</left_flank>
        <right_flank>TTGAATATTTGTGGGCGGAGGAGTTTAGCACATCACCATCTTCAGAATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATATCTTTTAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAACCGTATCTAACAGGAAAAAAATCAACACGTGTTTTTCCCTGCAATTAAGAAACTATACAGAACTTCAGAAACTATGGGACATTTCAAAAACTATACGACACTATACGATACTAAACTGTGAGCCAATCAGATTGCTTTTTAAGGAGAGCACTCTCTTGTTTTTTTTCACAATTTCTAGTCATTGATCATCTACTTCAAGTCTTCTAATAACCGATTCTTCTGACAAGCGAGTTGGTTTTCAGTTTCATTATCAAAAGTCCAGCATGCTTTCTAATTTTATGCTCTCTTGAGAAATCGATGGTCTTTCTTATAGCTTTCTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTGCATCTTAGACACAATATGAGACTGTGAGAAATATAAAGACTAACGAACAACGGGACAATAGAAAAATTTGAATATTTGTGGGCGGAGGAGTTTAGCACATCACCATCTTCAGAATTTGGATGTATATAAAAGGATCGTTTCAGCCAAATAGAAACAATCTTCAAGTCAAATCGGAATACGTCGTTTCAAAGAATGTTTGAATGTTCGAGAAATTCTTGTTGTGGCATCCATATTCGCAATCGGGAACTATCTACTACCAACTCCGACCATTGAAGGTTAGTTTTTGACGAAGTTCTAGGAAAACAAAAAATGTAGTCGACGTCTCAGCTAAAAAATGGCAGGGAGGTTGTTTATTACTTTGAGCCATAAATTTTTGTTCCAGAACTACCTCAAAACCCATAAAACAAAATTGAAGTAGCCGTCATTTTAATGTAACACATTTTCAGAACACCCGACGGAACACAAATGCTCCGTGATTCAGTACCGAACGGCTGCAAATATTACTCGTCCTTCTTGGAAAGCCCTTCTCATGACTCATAAACCAGAAATCCAAGTCGACAGTGTTGA</canonical>
            <polymorphic>GATATCTTTTAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAACCGTATCTAACAGGAAAAAAATCAACACGTGTTTTTCCCTGCAATTAAGAAACTATACAGAACTTCAGAAACTATGGGACATTTCAAAAACTATACGACACTATACGATACTAAACTGTGAGCCAATCAGATTGCTTTTTAAGGAGAGCACTCTCTTGTTTTTTTTCACAATTTCTAGTCATTGATCATCTACTTCAAGTCTTCTAATAACCGATTCTTCTGACAAGCGAGTTGGTTTTCAGTTTCATTATCAAAAGTCCAGCATGCTTTCTAATTTTATGCTCTCTTGAGAAATCGATGGTCTTTCTTATAGCTTTCTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTGCATCTTAGACACAATATGAGACTGTGAGAAATATAAAGACTAACGAACAACGGGACAATAGAAAAAWTTGAATATTTGTGGGCGGAGGAGTTTAGCACATCACCATCTTCAGAATTTGGATGTATATAAAAGGATCGTTTCAGCCAAATAGAAACAATCTTCAAGTCAAATCGGAATACGTCGTTTCAAAGAATGTTTGAATGTTCGAGAAATTCTTGTTGTGGCATCCATATTCGCAATCGGGAACTATCTACTACCAACTCCGACCATTGAAGGTTAGTTTTTGACGAAGTTCTAGGAAAACAAAAAATGTAGTCGACGTCTCAGCTAAAAAATGGCAGGGAGGTTGTTTATTACTTTGAGCCATAAATTTTTGTTCCAGAACTACCTCAAAACCCATAAAACAAAATTGAAGTAGCCGTCATTTTAATGTAACACATTTTCAGAACACCCGACGGAACACAAATGCTCCGTGATTCAGTACCGAACGGCTGCAAATATTACTCGTCCTTCTTGGAAAGCCCTTCTCATGACTCATAAACCAGAAATCCAAGTCGACAGTGTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>497 199 158 98 48</canonical_bands>
                <polymorphic_bands>545 199 158 98</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>160 158 146 127 121 103 98 48 39</canonical_bands>
                <polymorphic_bands>194 160 158 127 121 103 98 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTCAACGTCAGCTTTTCTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTCTCGAACATTCAAACATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTGCATCTTAGACACAATATGAGACTGTGAGAAATATAAAGACTAACGAACAACGGGACAATAGAAAAATTTGAATATTTGTGGGCGGAGGAGTTTAGCACATCACCATCTTCAGAATTTGGATGTATATAAAAGGATCGTTTCAGCCAAATAGAAACAATCTTCAAGTCAAATCGGAATACGTCGTTTCAAAGAATGTTTGAATGTTCGAGAAAT</canonical_amplicon>
		<polymorphic_amplicon>CTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTGCATCTTAGACACAATATGAGACTGTGAGAAATATAAAGACTAACGAACAACGGGACAATAGAAAAAWTTGAATATTTGTGGGCGGAGGAGTTTAGCACATCACCATCTTCAGAATTTGGATGTATATAAAAGGATCGTTTCAGCCAAATAGAAACAATCTTCAAGTCAAATCGGAATACGTCGTTTCAAAGAATGTTTGAATGTTCGAGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34871</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>137531</contig_pos>
        <strand></strand>
        <context>TCACCATCTT[C/T]AGAATTTGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAAAATTTGAATATTTGTGGGCGGAGGAGTTTAGCACATCACCATCTT</left_flank>
        <right_flank>AGAATTTGGATGTATATAAAAGGATCGTTTCAGCCAAATAGAAACAATCT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAACCGTATCTAACAGGAAAAAAATCAACACGTGTTTTTCCCTGCAATTAAGAAACTATACAGAACTTCAGAAACTATGGGACATTTCAAAAACTATACGACACTATACGATACTAAACTGTGAGCCAATCAGATTGCTTTTTAAGGAGAGCACTCTCTTGTTTTTTTTCACAATTTCTAGTCATTGATCATCTACTTCAAGTCTTCTAATAACCGATTCTTCTGACAAGCGAGTTGGTTTTCAGTTTCATTATCAAAAGTCCAGCATGCTTTCTAATTTTATGCTCTCTTGAGAAATCGATGGTCTTTCTTATAGCTTTCTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTGCATCTTAGACACAATATGAGACTGTGAGAAATATAAAGACTAACGAACAACGGGACAATAGAAAAATTTGAATATTTGTGGGCGGAGGAGTTTAGCACATCACCATCTTCAGAATTTGGATGTATATAAAAGGATCGTTTCAGCCAAATAGAAACAATCTTCAAGTCAAATCGGAATACGTCGTTTCAAAGAATGTTTGAATGTTCGAGAAATTCTTGTTGTGGCATCCATATTCGCAATCGGGAACTATCTACTACCAACTCCGACCATTGAAGGTTAGTTTTTGACGAAGTTCTAGGAAAACAAAAAATGTAGTCGACGTCTCAGCTAAAAAATGGCAGGGAGGTTGTTTATTACTTTGAGCCATAAATTTTTGTTCCAGAACTACCTCAAAACCCATAAAACAAAATTGAAGTAGCCGTCATTTTAATGTAACACATTTTCAGAACACCCGACGGAACACAAATGCTCCGTGATTCAGTACCGAACGGCTGCAAATATTACTCGTCCTTCTTGGAAAGCCCTTCTCATGACTCATAAACCAGAAATCCAAGTCGACAGTGTTGAAAACGGTGAAAACGTTTGCAGTTCTATTTTATGTTGTATGTCG</canonical>
            <polymorphic>GATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAACCGTATCTAACAGGAAAAAAATCAACACGTGTTTTTCCCTGCAATTAAGAAACTATACAGAACTTCAGAAACTATGGGACATTTCAAAAACTATACGACACTATACGATACTAAACTGTGAGCCAATCAGATTGCTTTTTAAGGAGAGCACTCTCTTGTTTTTTTTCACAATTTCTAGTCATTGATCATCTACTTCAAGTCTTCTAATAACCGATTCTTCTGACAAGCGAGTTGGTTTTCAGTTTCATTATCAAAAGTCCAGCATGCTTTCTAATTTTATGCTCTCTTGAGAAATCGATGGTCTTTCTTATAGCTTTCTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTGCATCTTAGACACAATATGAGACTGTGAGAAATATAAAGACTAACGAACAACGGGACAATAGAAAAATTTGAATATTTGTGGGCGGAGGAGTTTAGCACATCACCATCTTYAGAATTTGGATGTATATAAAAGGATCGTTTCAGCCAAATAGAAACAATCTTCAAGTCAAATCGGAATACGTCGTTTCAAAGAATGTTTGAATGTTCGAGAAATTCTTGTTGTGGCATCCATATTCGCAATCGGGAACTATCTACTACCAACTCCGACCATTGAAGGTTAGTTTTTGACGAAGTTCTAGGAAAACAAAAAATGTAGTCGACGTCTCAGCTAAAAAATGGCAGGGAGGTTGTTTATTACTTTGAGCCATAAATTTTTGTTCCAGAACTACCTCAAAACCCATAAAACAAAATTGAAGTAGCCGTCATTTTAATGTAACACATTTTCAGAACACCCGACGGAACACAAATGCTCCGTGATTCAGTACCGAACGGCTGCAAATATTACTCGTCCTTCTTGGAAAGCCCTTCTCATGACTCATAAACCAGAAATCCAAGTCGACAGTGTTGAAAACGGTGAAAACGTTTGCAGTTCTATTTTATGTTGTATGTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>244 181 165 103 92 91 62 62</canonical_bands>
                <polymorphic_bands>306 181 165 103 92 91 62</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTCAACGTCAGCTTTTCTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTCTCGAACATTCAAACATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTGCATCTTAGACACAATATGAGACTGTGAGAAATATAAAGACTAACGAACAACGGGACAATAGAAAAATTTGAATATTTGTGGGCGGAGGAGTTTAGCACATCACCATCTTCAGAATTTGGATGTATATAAAAGGATCGTTTCAGCCAAATAGAAACAATCTTCAAGTCAAATCGGAATACGTCGTTTCAAAGAATGTTTGAATGTTCGAGAAAT</canonical_amplicon>
		<polymorphic_amplicon>CTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTGCATCTTAGACACAATATGAGACTGTGAGAAATATAAAGACTAACGAACAACGGGACAATAGAAAAATTTGAATATTTGTGGGCGGAGGAGTTTAGCACATCACCATCTTYAGAATTTGGATGTATATAAAAGGATCGTTTCAGCCAAATAGAAACAATCTTCAAGTCAAATCGGAATACGTCGTTTCAAAGAATGTTTGAATGTTCGAGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34872</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>137599</contig_pos>
        <strand></strand>
        <context>AAATCGGAAT[A/G]CGTCGTTTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAGGATCGTTTCAGCCAAATAGAAACAATCTTCAAGTCAAATCGGAAT</left_flank>
        <right_flank>CGTCGTTTCAAAGAATGTTTGAATGTTCGAGAAATTCTTGTTGTGGCATC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCCCTGCAATTAAGAAACTATACAGAACTTCAGAAACTATGGGACATTTCAAAAACTATACGACACTATACGATACTAAACTGTGAGCCAATCAGATTGCTTTTTAAGGAGAGCACTCTCTTGTTTTTTTTCACAATTTCTAGTCATTGATCATCTACTTCAAGTCTTCTAATAACCGATTCTTCTGACAAGCGAGTTGGTTTTCAGTTTCATTATCAAAAGTCCAGCATGCTTTCTAATTTTATGCTCTCTTGAGAAATCGATGGTCTTTCTTATAGCTTTCTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTGCATCTTAGACACAATATGAGACTGTGAGAAATATAAAGACTAACGAACAACGGGACAATAGAAAAATTTGAATATTTGTGGGCGGAGGAGTTTAGCACATCACCATCTTCAGAATTTGGATGTATATAAAAGGATCGTTTCAGCCAAATAGAAACAATCTTCAAGTCAAATCGGAATACGTCGTTTCAAAGAATGTTTGAATGTTCGAGAAATTCTTGTTGTGGCATCCATATTCGCAATCGGGAACTATCTACTACCAACTCCGACCATTGAAGGTTAGTTTTTGACGAAGTTCTAGGAAAACAAAAAATGTAGTCGACGTCTCAGCTAAAAAATGGCAGGGAGGTTGTTTATTACTTTGAGCCATAAATTTTTGTTCCAGAACTACCTCAAAACCCATAAAACAAAATTGAAGTAGCCGTCATTTTAATGTAACACATTTTCAGAACACCCGACGGAACACAAATGCTCCGTGATTCAGTACCGAACGGCTGCAAATATTACTCGTCCTTCTTGGAAAGCCCTTCTCATGACTCATAAACCAGAAATCCAAGTCGACAGTGTTGAAAACGGTGAAAACGTTTGCAGTTCTATTTTATGTTGTATGTCGTGAATTTCAGAACATCGCCCATTTCACGGGGTACATTTTCATTCAAAACCAAGGAAGTTTTGTTCTTC</canonical>
            <polymorphic>TTTTCCCTGCAATTAAGAAACTATACAGAACTTCAGAAACTATGGGACATTTCAAAAACTATACGACACTATACGATACTAAACTGTGAGCCAATCAGATTGCTTTTTAAGGAGAGCACTCTCTTGTTTTTTTTCACAATTTCTAGTCATTGATCATCTACTTCAAGTCTTCTAATAACCGATTCTTCTGACAAGCGAGTTGGTTTTCAGTTTCATTATCAAAAGTCCAGCATGCTTTCTAATTTTATGCTCTCTTGAGAAATCGATGGTCTTTCTTATAGCTTTCTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTGCATCTTAGACACAATATGAGACTGTGAGAAATATAAAGACTAACGAACAACGGGACAATAGAAAAATTTGAATATTTGTGGGCGGAGGAGTTTAGCACATCACCATCTTCAGAATTTGGATGTATATAAAAGGATCGTTTCAGCCAAATAGAAACAATCTTCAAGTCAAATCGGAATRCGTCGTTTCAAAGAATGTTTGAATGTTCGAGAAATTCTTGTTGTGGCATCCATATTCGCAATCGGGAACTATCTACTACCAACTCCGACCATTGAAGGTTAGTTTTTGACGAAGTTCTAGGAAAACAAAAAATGTAGTCGACGTCTCAGCTAAAAAATGGCAGGGAGGTTGTTTATTACTTTGAGCCATAAATTTTTGTTCCAGAACTACCTCAAAACCCATAAAACAAAATTGAAGTAGCCGTCATTTTAATGTAACACATTTTCAGAACACCCGACGGAACACAAATGCTCCGTGATTCAGTACCGAACGGCTGCAAATATTACTCGTCCTTCTTGGAAAGCCCTTCTCATGACTCATAAACCAGAAATCCAAGTCGACAGTGTTGAAAACGGTGAAAACGTTTGCAGTTCTATTTTATGTTGTATGTCGTGAATTTCAGAACATCGCCCATTTCACGGGGTACATTTTCATTCAAAACCAAGGAAGTTTTGTTCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>293 260 207 141 99</canonical_bands>
                <polymorphic_bands>348 293 260 99</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGAAATATAAAGACTAACGAACA</pcr_primer_p1>
		<pcr_primer_p2>GGTCGGAGTTGGTAGTAGATAGT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TGAGAAATATAAAGACTAACGAACAACGGGACAATAGAAAAATTTGAATATTTGTGGGCGGAGGAGTTTAGCACATCACCATCTTCAGAATTTGGATGTATATAAAAGGATCGTTTCAGCCAAATAGAAACAATCTTCAAGTCAAATCGGAATACGTCGTTTCAAAGAATGTTTGAATGTTCGAGAAATTCTTGTTGTGGCATCCATATTCGCAATCGGGAACTATCTACTACCAACTCCGACC</canonical_amplicon>
		<polymorphic_amplicon>TGAGAAATATAAAGACTAACGAACAACGGGACAATAGAAAAATTTGAATATTTGTGGGCGGAGGAGTTTAGCACATCACCATCTTCAGAATTTGGATGTATATAAAAGGATCGTTTCAGCCAAATAGAAACAATCTTCAAGTCAAATCGGAATRCGTCGTTTCAAAGAATGTTTGAATGTTCGAGAAATTCTTGTTGTGGCATCCATATTCGCAATCGGGAACTATCTACTACCAACTCCGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34873</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>137713</contig_pos>
        <strand></strand>
        <context>TTTTGACGAA[G/T]TTCTAGGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGGAACTATCTACTACCAACTCCGACCATTGAAGGTTAGTTTTTGACGAA</left_flank>
        <right_flank>TTCTAGGAAAACAAAAAATGTAGTCGACGTCTCAGCTAAAAAATGGCAGG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCACTCTCTTGTTTTTTTTCACAATTTCTAGTCATTGATCATCTACTTCAAGTCTTCTAATAACCGATTCTTCTGACAAGCGAGTTGGTTTTCAGTTTCATTATCAAAAGTCCAGCATGCTTTCTAATTTTATGCTCTCTTGAGAAATCGATGGTCTTTCTTATAGCTTTCTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTGCATCTTAGACACAATATGAGACTGTGAGAAATATAAAGACTAACGAACAACGGGACAATAGAAAAATTTGAATATTTGTGGGCGGAGGAGTTTAGCACATCACCATCTTCAGAATTTGGATGTATATAAAAGGATCGTTTCAGCCAAATAGAAACAATCTTCAAGTCAAATCGGAATACGTCGTTTCAAAGAATGTTTGAATGTTCGAGAAATTCTTGTTGTGGCATCCATATTCGCAATCGGGAACTATCTACTACCAACTCCGACCATTGAAGGTTAGTTTTTGACGAAGTTCTAGGAAAACAAAAAATGTAGTCGACGTCTCAGCTAAAAAATGGCAGGGAGGTTGTTTATTACTTTGAGCCATAAATTTTTGTTCCAGAACTACCTCAAAACCCATAAAACAAAATTGAAGTAGCCGTCATTTTAATGTAACACATTTTCAGAACACCCGACGGAACACAAATGCTCCGTGATTCAGTACCGAACGGCTGCAAATATTACTCGTCCTTCTTGGAAAGCCCTTCTCATGACTCATAAACCAGAAATCCAAGTCGACAGTGTTGAAAACGGTGAAAACGTTTGCAGTTCTATTTTATGTTGTATGTCGTGAATTTCAGAACATCGCCCATTTCACGGGGTACATTTTCATTCAAAACCAAGGAAGTTTTGTTCTTCTCCTCCCACTGAAGGTTTATTCGATTTCCGTTGCTCTGGTAATAAAAAATTGTTAATTTGCAGATTCTGGTCGGACAAAGAACTACCCTCTCTTGAACTCCCAGAAGGTTAATG</canonical>
            <polymorphic>AGCACTCTCTTGTTTTTTTTCACAATTTCTAGTCATTGATCATCTACTTCAAGTCTTCTAATAACCGATTCTTCTGACAAGCGAGTTGGTTTTCAGTTTCATTATCAAAAGTCCAGCATGCTTTCTAATTTTATGCTCTCTTGAGAAATCGATGGTCTTTCTTATAGCTTTCTATTCAACGTCAGCTTTTCTTTGTGCTATTCTTCTGCATCTTAGACACAATATGAGACTGTGAGAAATATAAAGACTAACGAACAACGGGACAATAGAAAAATTTGAATATTTGTGGGCGGAGGAGTTTAGCACATCACCATCTTCAGAATTTGGATGTATATAAAAGGATCGTTTCAGCCAAATAGAAACAATCTTCAAGTCAAATCGGAATACGTCGTTTCAAAGAATGTTTGAATGTTCGAGAAATTCTTGTTGTGGCATCCATATTCGCAATCGGGAACTATCTACTACCAACTCCGACCATTGAAGGTTAGTTTTTGACGAAKTTCTAGGAAAACAAAAAATGTAGTCGACGTCTCAGCTAAAAAATGGCAGGGAGGTTGTTTATTACTTTGAGCCATAAATTTTTGTTCCAGAACTACCTCAAAACCCATAAAACAAAATTGAAGTAGCCGTCATTTTAATGTAACACATTTTCAGAACACCCGACGGAACACAAATGCTCCGTGATTCAGTACCGAACGGCTGCAAATATTACTCGTCCTTCTTGGAAAGCCCTTCTCATGACTCATAAACCAGAAATCCAAGTCGACAGTGTTGAAAACGGTGAAAACGTTTGCAGTTCTATTTTATGTTGTATGTCGTGAATTTCAGAACATCGCCCATTTCACGGGGTACATTTTCATTCAAAACCAAGGAAGTTTTGTTCTTCTCCTCCCACTGAAGGTTTATTCGATTTCCGTTGCTCTGGTAATAAAAAATTGTTAATTTGCAGATTCTGGTCGGACAAAGAACTACCCTCTCTTGAACTCCCAGAAGGTTAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTCAGCCAAATAGAAACAAT</pcr_primer_p1>
		<pcr_primer_p2>ACAAAAATTTATGGCTCAAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GTTTCAGCCAAATAGAAACAATCTTCAAGTCAAATCGGAATACGTCGTTTCAAAGAATGTTTGAATGTTCGAGAAATTCTTGTTGTGGCATCCATATTCGCAATCGGGAACTATCTACTACCAACTCCGACCATTGAAGGTTAGTTTTTGACGAAGTTCTAGGAAAACAAAAAATGTAGTCGACGTCTCAGCTAAAAAATGGCAGGGAGGTTGTTTATTACTTTGAGCCATAAATTTTTGT</canonical_amplicon>
		<polymorphic_amplicon>GTTTCAGCCAAATAGAAACAATCTTCAAGTCAAATCGGAATACGTCGTTTCAAAGAATGTTTGAATGTTCGAGAAATTCTTGTTGTGGCATCCATATTCGCAATCGGGAACTATCTACTACCAACTCCGACCATTGAAGGTTAGTTTTTGACGAAKTTCTAGGAAAACAAAAAATGTAGTCGACGTCTCAGCTAAAAAATGGCAGGGAGGTTGTTTATTACTTTGAGCCATAAATTTTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34874</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>139646</contig_pos>
        <strand>-</strand>
        <context>TTCTAGAAAT[G/T]GAAAACAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTAAATACCCAGAAAATTATCTAAAACTCACTCAAAACCTTCTAGAAAT</left_flank>
        <right_flank>GAAAACAACAAACATTTGCGACTCTTCCTTCTCAGAATCGTGTCATATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGAGGTATCGTTGCTTCTTCGATTGTTTTTCGGGTAAAAACAGTTTACACATCAGCTTTTGCAAAAAAGCAAACTGTTATGCAACGTTCAATATGTAAAACACCTCATTTTATATGTGAGAAAACCAACACATAAGATTTTGCAGAAAACCGTATATAAGGGGACCGAGAGGCAACGATGTGTACAGCAAATACGATATGAAGGACTTTTTTATCCTTGTCGTGGCGACCGTCTGTATTTCCCATTATATGGGCCCAAGCGACAATTTCGACGTCTGTCGCTCGTCGCTCGACAAGGATGGATAGTTTATCTTTGGAAAACTATGATTCTACTATAGTGGCATTTTTCACAGAGAATGCACACCCCACCCACCCCCCGAAACAACTCTGATCTTGAAAAGAAGCCGCTGTCGGAATACATGAATTCGGAATTCAACAGCCGAAACAGTCTAAATACCCAGAAAATTATCTAAAACTCACTCAAAACCTTCTAGAAATAGAAAACAACAAACATTTGCGACTCTTCCTTCTCAGAATCGTGTCATATTCTTCTCGCCATGAATTTTGACAGATTTAGGGGTCGATTATTGTAATTTACGGAGGAATAATAAAATGACATGACCGACAGTCGAAAAAAGATGAGATAACGAGTAGAATGCGAGATGACGATCTGCCAAAACCCACTCATAAATTTTTCGCGCCTTTAGAGATGTCTATCTATGGTCCACATTTGGCCGACGTTAAACTTTCGACAGAAAATAGGAAATTCTACGTGGGGAACATAAAGAATACGTGGCAAAANNNNNNNNNNACCCGGCTCACCTAGGGCGGGCGGTGACTGCCCCAATGGAAGGCGGGGGTAAGTTTATTTTCCCACGACAATGTTTGCAACTATACAGTTGTTTTCAGGCAAAAAAGAAACCACCGCCTACACCACAACCGCCCGCCCCGACACCCCGCCCGCCCATTTTCAACGTGTCACCGCTTCCTCCCGTTCGA</canonical>
            <polymorphic>GTTGAGGTATCGTTGCTTCTTCGATTGTTTTTCGGGTAAAAACAGTTTACACATCAGCTTTTGCAAAAAAGCAAACTGTTATGCAACGTTCAATATGTAAAACACCTCATTTTATATGTGAGAAAACCAACACATAAGATTTTGCAGAAAACCGTATATAAGGGGACCGAGAGGCAACGATGTGTACAGCAAATACGATATGAAGGACTTTTTTATCCTTGTCGTGGCGACCGTCTGTATTTCCCATTATATGGGCCCAAGCGACAATTTCGACGTCTGTCGCTCGTCGCTCGACAAGGATGGATAGTTTATCTTTGGAAAACTATGATTCTACTATAGTGGCATTTTTCACAGAGAATGCACACCCCACCCACCCCCCGAAACAACTCTGATCTTGAAAAGAAGCCGCTGTCGGAATACATGAATTCGGAATTCAACAGCCGAAACAGTCTAAATACCCAGAAAATTATCTAAAACTCACTCAAAACCTTCTAGAAATKGAAAACAACAAACATTTGCGACTCTTCCTTCTCAGAATCGTGTCATATTCTTCTCGCCATGAATTTTGACAGATTTAGGGGTCGATTATTGTAATTTACGGAGGAATAATAAAATGACATGACCGACAGTCGAAAAAAGATGAGATAACGAGTAGAATGCGAGATGACGATCTGCCAAAACCCACTCATAAATTTTTCGCGCCTTTAGAGATGTCTATCTATGGTCCACATTTGGCCGACGTTAAACTTTCGACAGAAAATAGGAAATTCTACGTGGGGAACATAAAGAATACGTGGCAAAANNNNNNNNNNACCCGGCTCACCTAGGGCGGGCGGTGACTGCCCCAATGGAAGGCGGGGGTAAGTTTATTTTCCCACGACAATGTTTGCAACTATACAGTTGTTTTCAGGCAAAAAAGAAACCACCGCCTACACCACAACCGCCCGCCCCGACACCCCGCCCGCCCATTTTCAACGTGTCACCGCTTCCTCCCGTTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTACTATAGTGGCATTTTTCACA</pcr_primer_p1>
		<pcr_primer_p2>CCCTAAATCTGTCAAAATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTACTATAGTGGCATTTTTCACAGAGAATGCACACCCCACCCACCCCCCGAAACAACTCTGATCTTGAAAAGAAGCCGCTGTCGGAATACATGAATTCGGAATTCAACAGCCGAAACAGTCTAAATACCCAGAAAATTATCTAAAACTCACTCAAAACCTTCTAGAAATAGAAAACAACAAACATTTGCGACTCTTCCTTCTCAGAATCGTGTCATATTCTTCTCGCCATGAATTTTGACAGATTTAGGG</canonical_amplicon>
		<polymorphic_amplicon>TCTACTATAGTGGCATTTTTCACAGAGAATGCACACCCCACCCACCCCCCGAAACAACTCTGATCTTGAAAAGAAGCCGCTGTCGGAATACATGAATTCGGAATTCAACAGCCGAAACAGTCTAAATACCCAGAAAATTATCTAAAACTCACTCAAAACCTTCTAGAAATKGAAAACAACAAACATTTGCGACTCTTCCTTCTCAGAATCGTGTCATATTCTTCTCGCCATGAATTTTGACAGATTTAGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34875</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>139693</contig_pos>
        <strand>-</strand>
        <context>ATCGTGTCAT[G/T]TTCTTCTCGC</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATAGAAAACAACAAACATTTGCGACTCTTCCTTCTCAGAATCGTGTCAT</left_flank>
        <right_flank>TTCTTCTCGCCATGAATTTTGACAGATTTAGGGGTCGATTATTGTAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACACATCAGCTTTTGCAAAAAAGCAAACTGTTATGCAACGTTCAATATGTAAAACACCTCATTTTATATGTGAGAAAACCAACACATAAGATTTTGCAGAAAACCGTATATAAGGGGACCGAGAGGCAACGATGTGTACAGCAAATACGATATGAAGGACTTTTTTATCCTTGTCGTGGCGACCGTCTGTATTTCCCATTATATGGGCCCAAGCGACAATTTCGACGTCTGTCGCTCGTCGCTCGACAAGGATGGATAGTTTATCTTTGGAAAACTATGATTCTACTATAGTGGCATTTTTCACAGAGAATGCACACCCCACCCACCCCCCGAAACAACTCTGATCTTGAAAAGAAGCCGCTGTCGGAATACATGAATTCGGAATTCAACAGCCGAAACAGTCTAAATACCCAGAAAATTATCTAAAACTCACTCAAAACCTTCTAGAAATAGAAAACAACAAACATTTGCGACTCTTCCTTCTCAGAATCGTGTCATATTCTTCTCGCCATGAATTTTGACAGATTTAGGGGTCGATTATTGTAATTTACGGAGGAATAATAAAATGACATGACCGACAGTCGAAAAAAGATGAGATAACGAGTAGAATGCGAGATGACGATCTGCCAAAACCCACTCATAAATTTTTCGCGCCTTTAGAGATGTCTATCTATGGTCCACATTTGGCCGACGTTAAACTTTCGACAGAAAATAGGAAATTCTACGTGGGGAACATAAAGAATACGTGGCAAAANNNNNNNNNNACCCGGCTCACCTAGGGCGGGCGGTGACTGCCCCAATGGAAGGCGGGGGTAAGTTTATTTTCCCACGACAATGTTTGCAACTATACAGTTGTTTTCAGGCAAAAAAGAAACCACCGCCTACACCACAACCGCCCGCCCCGACACCCCGCCCGCCCATTTTCAACGTGTCACCGCTTCCTCCCGTTCGATGAACGGTTAGTTTTTTATTCCAATTTTTCAGAATTTTAAACCACGA</canonical>
            <polymorphic>TACACATCAGCTTTTGCAAAAAAGCAAACTGTTATGCAACGTTCAATATGTAAAACACCTCATTTTATATGTGAGAAAACCAACACATAAGATTTTGCAGAAAACCGTATATAAGGGGACCGAGAGGCAACGATGTGTACAGCAAATACGATATGAAGGACTTTTTTATCCTTGTCGTGGCGACCGTCTGTATTTCCCATTATATGGGCCCAAGCGACAATTTCGACGTCTGTCGCTCGTCGCTCGACAAGGATGGATAGTTTATCTTTGGAAAACTATGATTCTACTATAGTGGCATTTTTCACAGAGAATGCACACCCCACCCACCCCCCGAAACAACTCTGATCTTGAAAAGAAGCCGCTGTCGGAATACATGAATTCGGAATTCAACAGCCGAAACAGTCTAAATACCCAGAAAATTATCTAAAACTCACTCAAAACCTTCTAGAAATAGAAAACAACAAACATTTGCGACTCTTCCTTCTCAGAATCGTGTCATKTTCTTCTCGCCATGAATTTTGACAGATTTAGGGGTCGATTATTGTAATTTACGGAGGAATAATAAAATGACATGACCGACAGTCGAAAAAAGATGAGATAACGAGTAGAATGCGAGATGACGATCTGCCAAAACCCACTCATAAATTTTTCGCGCCTTTAGAGATGTCTATCTATGGTCCACATTTGGCCGACGTTAAACTTTCGACAGAAAATAGGAAATTCTACGTGGGGAACATAAAGAATACGTGGCAAAANNNNNNNNNNACCCGGCTCACCTAGGGCGGGCGGTGACTGCCCCAATGGAAGGCGGGGGTAAGTTTATTTTCCCACGACAATGTTTGCAACTATACAGTTGTTTTCAGGCAAAAAAGAAACCACCGCCTACACCACAACCGCCCGCCCCGACACCCCGCCCGCCCATTTTCAACGTGTCACCGCTTCCTCCCGTTCGATGAACGGTTAGTTTTTTATTCCAATTTTTCAGAATTTTAAACCACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAACTCTGATCTTGAAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>GACTGTCGGTCATGTCATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACAACTCTGATCTTGAAAAGAAGCCGCTGTCGGAATACATGAATTCGGAATTCAACAGCCGAAACAGTCTAAATACCCAGAAAATTATCTAAAACTCACTCAAAACCTTCTAGAAATAGAAAACAACAAACATTTGCGACTCTTCCTTCTCAGAATCGTGTCATATTCTTCTCGCCATGAATTTTGACAGATTTAGGGGTCGATTATTGTAATTTACGGAGGAATAATAAAATGACATGACCGACAGTC</canonical_amplicon>
		<polymorphic_amplicon>AACAACTCTGATCTTGAAAAGAAGCCGCTGTCGGAATACATGAATTCGGAATTCAACAGCCGAAACAGTCTAAATACCCAGAAAATTATCTAAAACTCACTCAAAACCTTCTAGAAATAGAAAACAACAAACATTTGCGACTCTTCCTTCTCAGAATCGTGTCATKTTCTTCTCGCCATGAATTTTGACAGATTTAGGGGTCGATTATTGTAATTTACGGAGGAATAATAAAATGACATGACCGACAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34876</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>139757</contig_pos>
        <strand>-</strand>
        <context>GAGGAATAAT[C/T]AAATGACATG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAATTTTGACAGATTTAGGGGTCGATTATTGTAATTTACGGAGGAATAAT</left_flank>
        <right_flank>AAATGACATGACCGACAGTCGAAAAAAGATGAGATAACGAGTAGAATGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATATGTGAGAAAACCAACACATAAGATTTTGCAGAAAACCGTATATAAGGGGACCGAGAGGCAACGATGTGTACAGCAAATACGATATGAAGGACTTTTTTATCCTTGTCGTGGCGACCGTCTGTATTTCCCATTATATGGGCCCAAGCGACAATTTCGACGTCTGTCGCTCGTCGCTCGACAAGGATGGATAGTTTATCTTTGGAAAACTATGATTCTACTATAGTGGCATTTTTCACAGAGAATGCACACCCCACCCACCCCCCGAAACAACTCTGATCTTGAAAAGAAGCCGCTGTCGGAATACATGAATTCGGAATTCAACAGCCGAAACAGTCTAAATACCCAGAAAATTATCTAAAACTCACTCAAAACCTTCTAGAAATAGAAAACAACAAACATTTGCGACTCTTCCTTCTCAGAATCGTGTCATATTCTTCTCGCCATGAATTTTGACAGATTTAGGGGTCGATTATTGTAATTTACGGAGGAATAATAAAATGACATGACCGACAGTCGAAAAAAGATGAGATAACGAGTAGAATGCGAGATGACGATCTGCCAAAACCCACTCATAAATTTTTCGCGCCTTTAGAGATGTCTATCTATGGTCCACATTTGGCCGACGTTAAACTTTCGACAGAAAATAGGAAATTCTACGTGGGGAACATAAAGAATACGTGGCAAAANNNNNNNNNNACCCGGCTCACCTAGGGCGGGCGGTGACTGCCCCAATGGAAGGCGGGGGTAAGTTTATTTTCCCACGACAATGTTTGCAACTATACAGTTGTTTTCAGGCAAAAAAGAAACCACCGCCTACACCACAACCGCCCGCCCCGACACCCCGCCCGCCCATTTTCAACGTGTCACCGCTTCCTCCCGTTCGATGAACGGTTAGTTTTTTATTCCAATTTTTCAGAATTTTAAACCACGAAATTACCTGCTATATGCTCAAAAATCAAATTTTAAATGGCAACTTAGACAAAATCGTTCAGCAT</canonical>
            <polymorphic>TTATATGTGAGAAAACCAACACATAAGATTTTGCAGAAAACCGTATATAAGGGGACCGAGAGGCAACGATGTGTACAGCAAATACGATATGAAGGACTTTTTTATCCTTGTCGTGGCGACCGTCTGTATTTCCCATTATATGGGCCCAAGCGACAATTTCGACGTCTGTCGCTCGTCGCTCGACAAGGATGGATAGTTTATCTTTGGAAAACTATGATTCTACTATAGTGGCATTTTTCACAGAGAATGCACACCCCACCCACCCCCCGAAACAACTCTGATCTTGAAAAGAAGCCGCTGTCGGAATACATGAATTCGGAATTCAACAGCCGAAACAGTCTAAATACCCAGAAAATTATCTAAAACTCACTCAAAACCTTCTAGAAATAGAAAACAACAAACATTTGCGACTCTTCCTTCTCAGAATCGTGTCATATTCTTCTCGCCATGAATTTTGACAGATTTAGGGGTCGATTATTGTAATTTACGGAGGAATAATYAAATGACATGACCGACAGTCGAAAAAAGATGAGATAACGAGTAGAATGCGAGATGACGATCTGCCAAAACCCACTCATAAATTTTTCGCGCCTTTAGAGATGTCTATCTATGGTCCACATTTGGCCGACGTTAAACTTTCGACAGAAAATAGGAAATTCTACGTGGGGAACATAAAGAATACGTGGCAAAANNNNNNNNNNACCCGGCTCACCTAGGGCGGGCGGTGACTGCCCCAATGGAAGGCGGGGGTAAGTTTATTTTCCCACGACAATGTTTGCAACTATACAGTTGTTTTCAGGCAAAAAAGAAACCACCGCCTACACCACAACCGCCCGCCCCGACACCCCGCCCGCCCATTTTCAACGTGTCACCGCTTCCTCCCGTTCGATGAACGGTTAGTTTTTTATTCCAATTTTTCAGAATTTTAAACCACGAAATTACCTGCTATATGCTCAAAAATCAAATTTTAAATGGCAACTTAGACAAAATCGTTCAGCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGACTCTTCCTTCTCAGAATC</pcr_primer_p1>
		<pcr_primer_p2>TCCTATTTTCTGTCGAAAGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CGACTCTTCCTTCTCAGAATCGTGTCATATTCTTCTCGCCATGAATTTTGACAGATTTAGGGGTCGATTATTGTAATTTACGGAGGAATAATAAAATGACATGACCGACAGTCGAAAAAAGATGAGATAACGAGTAGAATGCGAGATGACGATCTGCCAAAACCCACTCATAAATTTTTCGCGCCTTTAGAGATGTCTATCTATGGTCCACATTTGGCCGACGTTAAACTTTCGACAGAAAATAGGA</canonical_amplicon>
		<polymorphic_amplicon>CGACTCTTCCTTCTCAGAATCGTGTCATATTCTTCTCGCCATGAATTTTGACAGATTTAGGGGTCGATTATTGTAATTTACGGAGGAATAATYAAATGACATGACCGACAGTCGAAAAAAGATGAGATAACGAGTAGAATGCGAGATGACGATCTGCCAAAACCCACTCATAAATTTTTCGCGCCTTTAGAGATGTCTATCTATGGTCCACATTTGGCCGACGTTAAACTTTCGACAGAAAATAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34877</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>144036</contig_pos>
        <strand></strand>
        <context>atttttgcct[A/G]ttctgactat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGCACGGAGAATATATATTAAAACGTTATAGTAGTTGATTTTTGCCT</left_flank>
        <right_flank>TTCTGACTATTTCCAGAAATCTGATGCTCGTCTCTCTACTTTCAGCTCAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTTTTTTCGAAATTAGTTGTGGTCAACTTCTTCACTTTGCTTTTCTGTCTTTTGCCACGTATTCTTTATGTTCCCCACGTAGAATTTCCTATTTTCTGTCGAAAGTTTAACGTCGGCCAAATGTGGACCATAGATAGACATCTCTAAAGGCGCGAAAAATTTATGAGTGGGTTTTGGCAGATCGTCATCTCGCATTCTACTCGTTATCTCATCTTTTTTCGACTGTCGGTCATGTCATTTTATTATTCCTCCGTAAATTACAATAATCGACCCCTAAATCTGTCAAAATTCATGGCGAGAAGAATATGACACGATTCTGAGAAGGAAGAGTCGCAAATGTTTGTTGTTTTCTATTTCTAGAAGGTTTTGAGTGAGTTTTAGATAATTTTCTGGGTATTTAGACTGTTTCGGCTGTTGAATTCCGAATTCATGTATTTCGGGTAGCATTTTGCACGGAGAATATATATTAAAACGTTATAGTAGTTGATTTTTGCCTATTCTGACTATTTCCAGAAATCTGATGCTCGTCTCTCTACTTTCAGCTCACTATGAAAATTTCGGAAGGTGTAAAACATACCTAGATTCGTTCTAGAATTTGTTCATATTTTGCGAAATTCGAATTGAGCTATTGTTACCTTCAACCAAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTACCGTTTCAGATTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGAACTATCTCGATTCGTGTGAAAGATATCAAAAATGGGTCAACTGATAAAAGACAAGCATTTTATCAGTTGACAGTTTTTTGATACCTTTGACAGGGACCGAGATAATTTAGGTCAAAGTTGAAAGTTAAGTGTTTCTTCTTATACT</canonical>
            <polymorphic>TTCTTTTTTTCGAAATTAGTTGTGGTCAACTTCTTCACTTTGCTTTTCTGTCTTTTGCCACGTATTCTTTATGTTCCCCACGTAGAATTTCCTATTTTCTGTCGAAAGTTTAACGTCGGCCAAATGTGGACCATAGATAGACATCTCTAAAGGCGCGAAAAATTTATGAGTGGGTTTTGGCAGATCGTCATCTCGCATTCTACTCGTTATCTCATCTTTTTTCGACTGTCGGTCATGTCATTTTATTATTCCTCCGTAAATTACAATAATCGACCCCTAAATCTGTCAAAATTCATGGCGAGAAGAATATGACACGATTCTGAGAAGGAAGAGTCGCAAATGTTTGTTGTTTTCTATTTCTAGAAGGTTTTGAGTGAGTTTTAGATAATTTTCTGGGTATTTAGACTGTTTCGGCTGTTGAATTCCGAATTCATGTATTTCGGGTAGCATTTTGCACGGAGAATATATATTAAAACGTTATAGTAGTTGATTTTTGCCTRTTCTGACTATTTCCAGAAATCTGATGCTCGTCTCTCTACTTTCAGCTCACTATGAAAATTTCGGAAGGTGTAAAACATACCTAGATTCGTTCTAGAATTTGTTCATATTTTGCGAAATTCGAATTGAGCTATTGTTACCTTCAACCAAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTACCGTTTCAGATTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGAACTATCTCGATTCGTGTGAAAGATATCAAAAATGGGTCAACTGATAAAAGACAAGCATTTTATCAGTTGACAGTTTTTTGATACCTTTGACAGGGACCGAGATAATTTAGGTCAAAGTTGAAAGTTAAGTGTTTCTTCTTATACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATTTAGACTGTTTCGGCTGT</pcr_primer_p1>
		<pcr_primer_p2>TGAAGGTAACAATAGCTCAATTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTATTTAGACTGTTTCGGCTGTTGAATTCCGAATTCATGTATTTCGGGTAGCATTTTGCACGGAGAATATATATTAAAACGTTATAGTAGTTGATTTTTGCCTATTCTGACTATTTCCAGAAATCTGATGCTCGTCTCTCTACTTTCAGCTCACTATGAAAATTTCGGAAGGTGTAAAACATACCTAGATTCGTTCTAGAATTTGTTCATATTTTGCGAAATTCGAATTGAGCTATTGTTACCTTCA</canonical_amplicon>
		<polymorphic_amplicon>GTATTTAGACTGTTTCGGCTGTTGAATTCCGAATTCATGTATTTCGGGTAGCATTTTGCACGGAGAATATATATTAAAACGTTATAGTAGTTGATTTTTGCCTRTTCTGACTATTTCCAGAAATCTGATGCTCGTCTCTCTACTTTCAGCTCACTATGAAAATTTCGGAAGGTGTAAAACATACCTAGATTCGTTCTAGAATTTGTTCATATTTTGCGAAATTCGAATTGAGCTATTGTTACCTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34878</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>144081</contig_pos>
        <strand></strand>
        <context>tctactttca[G/C]ctcactatga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TGCCTATTCTGACTATTTCCAGAAATCTGATGCTCGTCTCTCTACTTTCA</left_flank>
        <right_flank>CTCACTATGAAAATTTCGGAAGGTGTAAAACATACCTAGATTCGTTCTAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGTCTTTTGCCACGTATTCTTTATGTTCCCCACGTAGAATTTCCTATTTTCTGTCGAAAGTTTAACGTCGGCCAAATGTGGACCATAGATAGACATCTCTAAAGGCGCGAAAAATTTATGAGTGGGTTTTGGCAGATCGTCATCTCGCATTCTACTCGTTATCTCATCTTTTTTCGACTGTCGGTCATGTCATTTTATTATTCCTCCGTAAATTACAATAATCGACCCCTAAATCTGTCAAAATTCATGGCGAGAAGAATATGACACGATTCTGAGAAGGAAGAGTCGCAAATGTTTGTTGTTTTCTATTTCTAGAAGGTTTTGAGTGAGTTTTAGATAATTTTCTGGGTATTTAGACTGTTTCGGCTGTTGAATTCCGAATTCATGTATTTCGGGTAGCATTTTGCACGGAGAATATATATTAAAACGTTATAGTAGTTGATTTTTGCCTATTCTGACTATTTCCAGAAATCTGATGCTCGTCTCTCTACTTTCAGCTCACTATGAAAATTTCGGAAGGTGTAAAACATACCTAGATTCGTTCTAGAATTTGTTCATATTTTGCGAAATTCGAATTGAGCTATTGTTACCTTCAACCAAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTACCGTTTCAGATTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGAACTATCTCGATTCGTGTGAAAGATATCAAAAATGGGTCAACTGATAAAAGACAAGCATTTTATCAGTTGACAGTTTTTTGATACCTTTGACAGGGACCGAGATAATTTAGGTCAAAGTTGAAAGTTAAGTGTTTCTTCTTATACTGGGTATACGTTATAAAGACATTTTGATATCAGTCTCCACGGATAG</canonical>
            <polymorphic>TTCTGTCTTTTGCCACGTATTCTTTATGTTCCCCACGTAGAATTTCCTATTTTCTGTCGAAAGTTTAACGTCGGCCAAATGTGGACCATAGATAGACATCTCTAAAGGCGCGAAAAATTTATGAGTGGGTTTTGGCAGATCGTCATCTCGCATTCTACTCGTTATCTCATCTTTTTTCGACTGTCGGTCATGTCATTTTATTATTCCTCCGTAAATTACAATAATCGACCCCTAAATCTGTCAAAATTCATGGCGAGAAGAATATGACACGATTCTGAGAAGGAAGAGTCGCAAATGTTTGTTGTTTTCTATTTCTAGAAGGTTTTGAGTGAGTTTTAGATAATTTTCTGGGTATTTAGACTGTTTCGGCTGTTGAATTCCGAATTCATGTATTTCGGGTAGCATTTTGCACGGAGAATATATATTAAAACGTTATAGTAGTTGATTTTTGCCTATTCTGACTATTTCCAGAAATCTGATGCTCGTCTCTCTACTTTCASCTCACTATGAAAATTTCGGAAGGTGTAAAACATACCTAGATTCGTTCTAGAATTTGTTCATATTTTGCGAAATTCGAATTGAGCTATTGTTACCTTCAACCAAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTACCGTTTCAGATTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGAACTATCTCGATTCGTGTGAAAGATATCAAAAATGGGTCAACTGATAAAAGACAAGCATTTTATCAGTTGACAGTTTTTTGATACCTTTGACAGGGACCGAGATAATTTAGGTCAAAGTTGAAAGTTAAGTGTTTCTTCTTATACTGGGTATACGTTATAAAGACATTTTGATATCAGTCTCCACGGATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>500 194 131 92 83</canonical_bands>
                <polymorphic_bands>583 194 131 92</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>295 194 131 131 83 74 68 24</canonical_bands>
                <polymorphic_bands>295 214 194 131 74 68 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATTTAGACTGTTTCGGCTGT</pcr_primer_p1>
		<pcr_primer_p2>TGAAGGTAACAATAGCTCAATTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTATTTAGACTGTTTCGGCTGTTGAATTCCGAATTCATGTATTTCGGGTAGCATTTTGCACGGAGAATATATATTAAAACGTTATAGTAGTTGATTTTTGCCTATTCTGACTATTTCCAGAAATCTGATGCTCGTCTCTCTACTTTCAGCTCACTATGAAAATTTCGGAAGGTGTAAAACATACCTAGATTCGTTCTAGAATTTGTTCATATTTTGCGAAATTCGAATTGAGCTATTGTTACCTTCA</canonical_amplicon>
		<polymorphic_amplicon>GTATTTAGACTGTTTCGGCTGTTGAATTCCGAATTCATGTATTTCGGGTAGCATTTTGCACGGAGAATATATATTAAAACGTTATAGTAGTTGATTTTTGCCTATTCTGACTATTTCCAGAAATCTGATGCTCGTCTCTCTACTTTCASCTCACTATGAAAATTTCGGAAGGTGTAAAACATACCTAGATTCGTTCTAGAATTTGTTCATATTTTGCGAAATTCGAATTGAGCTATTGTTACCTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34879</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>144233</contig_pos>
        <strand>+</strand>
        <context>MGTTTCAGAW[C/T]TTTTTTTCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTACCGTTTCAGAT</left_flank>
        <right_flank>TTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTACTCGTTATCTCATCTTTTTTCGACTGTCGGTCATGTCATTTTATTATTCCTCCGTAAATTACAATAATCGACCCCTAAATCTGTCAAAATTCATGGCGAGAAGAATATGACACGATTCTGAGAAGGAAGAGTCGCAAATGTTTGTTGTTTTCTATTTCTAGAAGGTTTTGAGTGAGTTTTAGATAATTTTCTGGGTATTTAGACTGTTTCGGCTGTTGAATTCCGAATTCATGTATTTCGGGTAGCATTTTGCACGGAGAATATATATTAAAACGTTATAGTAGTTGATTTTTGCCTATTCTGACTATTTCCAGAAATCTGATGCTCGTCTCTCTACTTTCAGCTCACTATGAAAATTTCGGAAGGTGTAAAACATACCTAGATTCGTTCTAGAATTTGTTCATATTTTGCGAAATTCGAATTGAGCTATTGTTACCTTCAACCAAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTACCGTTTCAGATTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGAACTATCTCGATTCGTGTGAAAGATATCAAAAATGGGTCAACTGATAAAAGACAAGCATTTTATCAGTTGACAGTTTTTTGATACCTTTGACAGGGACCGAGATAATTTAGGTCAAAGTTGAAAGTTAAGTGTTTCTTCTTATACTGGGTATACGTTATAAAGACATTTTGATATCAGTCTCCACGGATAGAAAATTTCTAGAAACATCATTTTCTAGAATTCCCTATTCAGCTCTAACCAAGCTTTCACCATACTTTCTCTCCTCCACGGATACTGTCACTTGTTTTCGATTTCTTGTTTCTCATCCCCAATGCCCCTAATTATTCGTCCCCCTTCTCTCTC</canonical>
            <polymorphic>TTCTACTCGTTATCTCATCTTTTTTCGACTGTCGGTCATGTCATTTTATTATTCCTCCGTAAATTACAATAATCGACCCCTAAATCTGTCAAAATTCATGGCGAGAAGAATATGACACGATTCTGAGAAGGAAGAGTCGCAAATGTTTGTTGTTTTCTATTTCTAGAAGGTTTTGAGTGAGTTTTAGATAATTTTCTGGGTATTTAGACTGTTTCGGCTGTTGAATTCCGAATTCATGTATTTCGGGTAGCATTTTGCACGGAGAATATATATTAAAACGTTATAGTAGTTGATTTTTGCCTATTCTGACTATTTCCAGAAATCTGATGCTCGTCTCTCTACTTTCAGCTCACTATGAAAATTTCGGAAGGTGTAAAACATACCTAGATTCGTTCTAGAATTTGTTCATATTTTGCGAAATTCGAATTGAGCTATTGTTACCTTCAACCAAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTACCGTTTCAGATYTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGAACTATCTCGATTCGTGTGAAAGATATCAAAAATGGGTCAACTGATAAAAGACAAGCATTTTATCAGTTGACAGTTTTTTGATACCTTTGACAGGGACCGAGATAATTTAGGTCAAAGTTGAAAGTTAAGTGTTTCTTCTTATACTGGGTATACGTTATAAAGACATTTTGATATCAGTCTCCACGGATAGAAAATTTCTAGAAACATCATTTTCTAGAATTCCCTATTCAGCTCTAACCAAGCTTTCACCATACTTTCTCTCCTCCACGGATACTGTCACTTGTTTTCGATTTCTTGTTTCTCATCCCCAATGCCCCTAATTATTCGTCCCCCTTCTCTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCAAAATTTGATTAATGTGCT</pcr_primer_p1>
		<pcr_primer_p2>TGGAGACTGATATCAAAATGTCT</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>ACCAAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTACCGTTTCAGATTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGAACTATCTCGATTCGTGTGAAAGATATCAAAAATGGGTCAACTGATAAAAGACAAGCATTTTATCAGTTGACAGTTTTTTGATACCTTTGACAGGGACCGAGATAATTTAGGTCAAAGTTGAAAGTTAAGTGTTTCTTCTTATACTGGGTATACGTTATAAAGACATTTTGATATCAGTCTCCA</canonical_amplicon>
		<polymorphic_amplicon>ACCAAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTACCGTTTCAGATYTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGAACTATCTCGATTCGTGTGAAAGATATCAAAAATGGGTCAACTGATAAAAGACAAGCATTTTATCAGTTGACAGTTTTTTGATACCTTTGACAGGGACCGAGATAATTTAGGTCAAAGTTGAAAGTTAAGTGTTTCTTCTTATACTGGGTATACGTTATAAAGACATTTTGATATCAGTCTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34880</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>144285</contig_pos>
        <strand>+</strand>
        <context>GATTAARCAA[A/G]TTTCGATAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAA</left_flank>
        <right_flank>TTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATT</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTCCGTAAATTACAATAATCGACCCCTAAATCTGTCAAAATTCATGGCGAGAAGAATATGACACGATTCTGAGAAGGAAGAGTCGCAAATGTTTGTTGTTTTCTATTTCTAGAAGGTTTTGAGTGAGTTTTAGATAATTTTCTGGGTATTTAGACTGTTTCGGCTGTTGAATTCCGAATTCATGTATTTCGGGTAGCATTTTGCACGGAGAATATATATTAAAACGTTATAGTAGTTGATTTTTGCCTATTCTGACTATTTCCAGAAATCTGATGCTCGTCTCTCTACTTTCAGCTCACTATGAAAATTTCGGAAGGTGTAAAACATACCTAGATTCGTTCTAGAATTTGTTCATATTTTGCGAAATTCGAATTGAGCTATTGTTACCTTCAACCAAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTACCGTTTCAGATTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGAACTATCTCGATTCGTGTGAAAGATATCAAAAATGGGTCAACTGATAAAAGACAAGCATTTTATCAGTTGACAGTTTTTTGATACCTTTGACAGGGACCGAGATAATTTAGGTCAAAGTTGAAAGTTAAGTGTTTCTTCTTATACTGGGTATACGTTATAAAGACATTTTGATATCAGTCTCCACGGATAGAAAATTTCTAGAAACATCATTTTCTAGAATTCCCTATTCAGCTCTAACCAAGCTTTCACCATACTTTCTCTCCTCCACGGATACTGTCACTTGTTTTCGATTTCTTGTTTCTCATCCCCAATGCCCCTAATTATTCGTCCCCCTTCTCTCTCCCTACTAGCTTACCGTGAAATGACGATATTGTCGTTCTAGCAAATTTGTCTC</canonical>
            <polymorphic>TCCTCCGTAAATTACAATAATCGACCCCTAAATCTGTCAAAATTCATGGCGAGAAGAATATGACACGATTCTGAGAAGGAAGAGTCGCAAATGTTTGTTGTTTTCTATTTCTAGAAGGTTTTGAGTGAGTTTTAGATAATTTTCTGGGTATTTAGACTGTTTCGGCTGTTGAATTCCGAATTCATGTATTTCGGGTAGCATTTTGCACGGAGAATATATATTAAAACGTTATAGTAGTTGATTTTTGCCTATTCTGACTATTTCCAGAAATCTGATGCTCGTCTCTCTACTTTCAGCTCACTATGAAAATTTCGGAAGGTGTAAAACATACCTAGATTCGTTCTAGAATTTGTTCATATTTTGCGAAATTCGAATTGAGCTATTGTTACCTTCAACCAAAATTTGATTAATGTGCTTGTAACGGATTCACAATCTACCGTTTCAGATTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAARTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGAACTATCTCGATTCGTGTGAAAGATATCAAAAATGGGTCAACTGATAAAAGACAAGCATTTTATCAGTTGACAGTTTTTTGATACCTTTGACAGGGACCGAGATAATTTAGGTCAAAGTTGAAAGTTAAGTGTTTCTTCTTATACTGGGTATACGTTATAAAGACATTTTGATATCAGTCTCCACGGATAGAAAATTTCTAGAAACATCATTTTCTAGAATTCCCTATTCAGCTCTAACCAAGCTTTCACCATACTTTCTCTCCTCCACGGATACTGTCACTTGTTTTCGATTTCTTGTTTCTCATCCCCAATGCCCCTAATTATTCGTCCCCCTTCTCTCTCCCTACTAGCTTACCGTGAAATGACGATATTGTCGTTCTAGCAAATTTGTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGTAACGGATTCACAATCTAC</pcr_primer_p1>
		<pcr_primer_p2>TGGAGACTGATATCAAAATGTCT</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>CTTGTAACGGATTCACAATCTACCGTTTCAGATTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAAGTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGAACTATCTCGATTCGTGTGAAAGATATCAAAAATGGGTCAACTGATAAAAGACAAGCATTTTATCAGTTGACAGTTTTTTGATACCTTTGACAGGGACCGAGATAATTTAGGTCAAAGTTGAAAGTTAAGTGTTTCTTCTTATACTGGGTATACGTTATAAAGACATTTTGATATCAGTCTCCA</canonical_amplicon>
		<polymorphic_amplicon>CTTGTAACGGATTCACAATCTACCGTTTCAGATTTTTTTTTCGATTCTCGTACAATTCATTTCCCAACTCAAATAGATTAAACAARTTTCGATAAGCTTATCATTGAATATATTGTAAATTTTGCATATTGAAATTGAAAAAAACCTAATTGGTCTGACAGAAGCCCGCCCTTTACGTGCAGTTTAAGCTGAACTATCTCGATTCGTGTGAAAGATATCAAAAATGGGTCAACTGATAAAAGACAAGCATTTTATCAGTTGACAGTTTTTTGATACCTTTGACAGGGACCGAGATAATTTAGGTCAAAGTTGAAAGTTAAGTGTTTCTTCTTATACTGGGTATACGTTATAAAGACATTTTGATATCAGTCTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34881</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>181970</contig_pos>
        <strand></strand>
        <context>tacgtctaca[A/T]tacaaaaacg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATATGCGGCCAAATTCACGGAATTTTCTTGTATACATTTTTACGTCTACA</left_flank>
        <right_flank>TACAAAAACGGACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGGATATGAAAAAGTTGTCAACTAATAAATTGTTTATCACAATATCATAAGTGTTTTGTCAGTTGACACATTTATAATATCTTGTATGAGAATTGAGACAATTGAGCTCAAGTTTGACAGTGTGGGCTTATAGTAAATCACTACGAAATTTTCAAATGTTCATCTAGATTTTGTCTGAATGGGAATGAACATAATAATTAGTGAACAAACAAAAAAACAGAAACTGAAATAATTTTCAGCAAATTGAAGTAAACAAATAACGGATGTCATTCTTTCTTTTTGACCTAGAGAAAAGTTGTTGAATTCCAAATTTTTTAGATATCAAAAATATAATTTCGATTTTAATTACTGTTGAAAAAGGGAAGAACCTACAGCTGTTCAATATAACCCAATATTTGAGCTTATGGGTTGAACACTTCTTTAAAATTTTTCCAAGAAAAGGATATCATATGCGGCCAAATTCACGGAATTTTCTTGTATACATTTTTACGTCTACAATACAAAAACGGACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTGAAAAACTAGGAATTTATTAGAAGTTCTGCACATTCAAAGTTATCCATCTATGTATGCTTCACACTCTCTAAAATTTTCAAATTATTCGGAAATTTGACATCCGAGGTCCAGACCCTTGAAAATGGTCAACATGACCGAAAATCAAATGAAAAATACGTTTATGTAGGTATATCTTATGTTTACTGTACATCATTCGAATTTAGACACAAAATCTCATTGGAAACTATATTTTGCAGAATAAAAACTTTCTGAAACTAATATACAATACAATTCCTATTGAAGTGGATTACTAAAAATTCTTCTTTTCCAATGCTGGTTTCTTTTAAAAATTGCATTGTTCCCAAACAATGTTATTCTCAAGAATGAGAAGAAAAATTGAAAAACTCGGTTATGTTTAACACGTTCTCCCGTTTTTTTTACATCTCTCCCATCGCCGACAAAGATGCGAAA</canonical>
            <polymorphic>CAAGGATATGAAAAAGTTGTCAACTAATAAATTGTTTATCACAATATCATAAGTGTTTTGTCAGTTGACACATTTATAATATCTTGTATGAGAATTGAGACAATTGAGCTCAAGTTTGACAGTGTGGGCTTATAGTAAATCACTACGAAATTTTCAAATGTTCATCTAGATTTTGTCTGAATGGGAATGAACATAATAATTAGTGAACAAACAAAAAAACAGAAACTGAAATAATTTTCAGCAAATTGAAGTAAACAAATAACGGATGTCATTCTTTCTTTTTGACCTAGAGAAAAGTTGTTGAATTCCAAATTTTTTAGATATCAAAAATATAATTTCGATTTTAATTACTGTTGAAAAAGGGAAGAACCTACAGCTGTTCAATATAACCCAATATTTGAGCTTATGGGTTGAACACTTCTTTAAAATTTTTCCAAGAAAAGGATATCATATGCGGCCAAATTCACGGAATTTTCTTGTATACATTTTTACGTCTACAWTACAAAAACGGACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTGAAAAACTAGGAATTTATTAGAAGTTCTGCACATTCAAAGTTATCCATCTATGTATGCTTCACACTCTCTAAAATTTTCAAATTATTCGGAAATTTGACATCCGAGGTCCAGACCCTTGAAAATGGTCAACATGACCGAAAATCAAATGAAAAATACGTTTATGTAGGTATATCTTATGTTTACTGTACATCATTCGAATTTAGACACAAAATCTCATTGGAAACTATATTTTGCAGAATAAAAACTTTCTGAAACTAATATACAATACAATTCCTATTGAAGTGGATTACTAAAAATTCTTCTTTTCCAATGCTGGTTTCTTTTAAAAATTGCATTGTTCCCAAACAATGTTATTCTCAAGAATGAGAAGAAAAATTGAAAAACTCGGTTATGTTTAACACGTTCTCCCGTTTTTTTTACATCTCTCCCATCGCCGACAAAGATGCGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTTTTCCAAGAAAAGGATA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCGAATGATGTACAGTAAAC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>AAAATTTTTCCAAGAAAAGGATATCATATGCGGCCAAATTCACGGAATTTTCTTGTATACATTTTTACGTCTACAATACAAAAACGGACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTGAAAAACTAGGAATTTATTAGAAGTTCTGCACATTCAAAGTTATCCATCTATGTATGCTTCACACTCTCTAAAATTTTCAAATTATTCGGAAATTTGACATCCGAGGTCCAGACCCTTGAAAATGGTCAACATGACCGAAAATCAAATGAAAAATACGTTTATGTAGGTATATCTTATGTTTACTGTACATCATTCGAATTT</canonical_amplicon>
		<polymorphic_amplicon>AAAATTTTTCCAAGAAAAGGATATCATATGCGGCCAAATTCACGGAATTTTCTTGTATACATTTTTACGTCTACAWTACAAAAACGGACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTGAAAAACTAGGAATTTATTAGAAGTTCTGCACATTCAAAGTTATCCATCTATGTATGCTTCACACTCTCTAAAATTTTCAAATTATTCGGAAATTTGACATCCGAGGTCCAGACCCTTGAAAATGGTCAACATGACCGAAAATCAAATGAAAAATACGTTTATGTAGGTATATCTTATGTTTACTGTACATCATTCGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34882</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>181981</contig_pos>
        <strand></strand>
        <context>tacaaaaacg[G/T]accaaaagaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTCACGGAATTTTCTTGTATACATTTTTACGTCTACAATACAAAAACG</left_flank>
        <right_flank>ACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTGAAAAACTAGGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAGTTGTCAACTAATAAATTGTTTATCACAATATCATAAGTGTTTTGTCAGTTGACACATTTATAATATCTTGTATGAGAATTGAGACAATTGAGCTCAAGTTTGACAGTGTGGGCTTATAGTAAATCACTACGAAATTTTCAAATGTTCATCTAGATTTTGTCTGAATGGGAATGAACATAATAATTAGTGAACAAACAAAAAAACAGAAACTGAAATAATTTTCAGCAAATTGAAGTAAACAAATAACGGATGTCATTCTTTCTTTTTGACCTAGAGAAAAGTTGTTGAATTCCAAATTTTTTAGATATCAAAAATATAATTTCGATTTTAATTACTGTTGAAAAAGGGAAGAACCTACAGCTGTTCAATATAACCCAATATTTGAGCTTATGGGTTGAACACTTCTTTAAAATTTTTCCAAGAAAAGGATATCATATGCGGCCAAATTCACGGAATTTTCTTGTATACATTTTTACGTCTACAATACAAAAACGGACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTGAAAAACTAGGAATTTATTAGAAGTTCTGCACATTCAAAGTTATCCATCTATGTATGCTTCACACTCTCTAAAATTTTCAAATTATTCGGAAATTTGACATCCGAGGTCCAGACCCTTGAAAATGGTCAACATGACCGAAAATCAAATGAAAAATACGTTTATGTAGGTATATCTTATGTTTACTGTACATCATTCGAATTTAGACACAAAATCTCATTGGAAACTATATTTTGCAGAATAAAAACTTTCTGAAACTAATATACAATACAATTCCTATTGAAGTGGATTACTAAAAATTCTTCTTTTCCAATGCTGGTTTCTTTTAAAAATTGCATTGTTCCCAAACAATGTTATTCTCAAGAATGAGAAGAAAAATTGAAAAACTCGGTTATGTTTAACACGTTCTCCCGTTTTTTTTACATCTCTCCCATCGCCGACAAAGATGCGAAAATAGGCGTGAG</canonical>
            <polymorphic>AAAAGTTGTCAACTAATAAATTGTTTATCACAATATCATAAGTGTTTTGTCAGTTGACACATTTATAATATCTTGTATGAGAATTGAGACAATTGAGCTCAAGTTTGACAGTGTGGGCTTATAGTAAATCACTACGAAATTTTCAAATGTTCATCTAGATTTTGTCTGAATGGGAATGAACATAATAATTAGTGAACAAACAAAAAAACAGAAACTGAAATAATTTTCAGCAAATTGAAGTAAACAAATAACGGATGTCATTCTTTCTTTTTGACCTAGAGAAAAGTTGTTGAATTCCAAATTTTTTAGATATCAAAAATATAATTTCGATTTTAATTACTGTTGAAAAAGGGAAGAACCTACAGCTGTTCAATATAACCCAATATTTGAGCTTATGGGTTGAACACTTCTTTAAAATTTTTCCAAGAAAAGGATATCATATGCGGCCAAATTCACGGAATTTTCTTGTATACATTTTTACGTCTACAATACAAAAACGKACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTGAAAAACTAGGAATTTATTAGAAGTTCTGCACATTCAAAGTTATCCATCTATGTATGCTTCACACTCTCTAAAATTTTCAAATTATTCGGAAATTTGACATCCGAGGTCCAGACCCTTGAAAATGGTCAACATGACCGAAAATCAAATGAAAAATACGTTTATGTAGGTATATCTTATGTTTACTGTACATCATTCGAATTTAGACACAAAATCTCATTGGAAACTATATTTTGCAGAATAAAAACTTTCTGAAACTAATATACAATACAATTCCTATTGAAGTGGATTACTAAAAATTCTTCTTTTCCAATGCTGGTTTCTTTTAAAAATTGCATTGTTCCCAAACAATGTTATTCTCAAGAATGAGAAGAAAAATTGAAAAACTCGGTTATGTTTAACACGTTCTCCCGTTTTTTTTACATCTCTCCCATCGCCGACAAAGATGCGAAAATAGGCGTGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>499 356 145</canonical_bands>
                <polymorphic_bands>644 356</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>499 356 145</canonical_bands>
                <polymorphic_bands>644 356</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTTTTCCAAGAAAAGGATA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCGAATGATGTACAGTAAAC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>AAAATTTTTCCAAGAAAAGGATATCATATGCGGCCAAATTCACGGAATTTTCTTGTATACATTTTTACGTCTACAATACAAAAACGGACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTGAAAAACTAGGAATTTATTAGAAGTTCTGCACATTCAAAGTTATCCATCTATGTATGCTTCACACTCTCTAAAATTTTCAAATTATTCGGAAATTTGACATCCGAGGTCCAGACCCTTGAAAATGGTCAACATGACCGAAAATCAAATGAAAAATACGTTTATGTAGGTATATCTTATGTTTACTGTACATCATTCGAATTT</canonical_amplicon>
		<polymorphic_amplicon>AAAATTTTTCCAAGAAAAGGATATCATATGCGGCCAAATTCACGGAATTTTCTTGTATACATTTTTACGTCTACAATACAAAAACGKACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTGAAAAACTAGGAATTTATTAGAAGTTCTGCACATTCAAAGTTATCCATCTATGTATGCTTCACACTCTCTAAAATTTTCAAATTATTCGGAAATTTGACATCCGAGGTCCAGACCCTTGAAAATGGTCAACATGACCGAAAATCAAATGAAAAATACGTTTATGTAGGTATATCTTATGTTTACTGTACATCATTCGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34883</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>182020</contig_pos>
        <strand></strand>
        <context>cggcaatact[G/A]aaaaactagr</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATACAAAAACGGACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACT</left_flank>
        <right_flank>AAAAACTAGGAATTTATTAGAAGTTCTGCACATTCAAAGTTATCCATCTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTGTTTTGTCAGTTGACACATTTATAATATCTTGTATGAGAATTGAGACAATTGAGCTCAAGTTTGACAGTGTGGGCTTATAGTAAATCACTACGAAATTTTCAAATGTTCATCTAGATTTTGTCTGAATGGGAATGAACATAATAATTAGTGAACAAACAAAAAAACAGAAACTGAAATAATTTTCAGCAAATTGAAGTAAACAAATAACGGATGTCATTCTTTCTTTTTGACCTAGAGAAAAGTTGTTGAATTCCAAATTTTTTAGATATCAAAAATATAATTTCGATTTTAATTACTGTTGAAAAAGGGAAGAACCTACAGCTGTTCAATATAACCCAATATTTGAGCTTATGGGTTGAACACTTCTTTAAAATTTTTCCAAGAAAAGGATATCATATGCGGCCAAATTCACGGAATTTTCTTGTATACATTTTTACGTCTACAATACAAAAACGGACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTGAAAAACTAGGAATTTATTAGAAGTTCTGCACATTCAAAGTTATCCATCTATGTATGCTTCACACTCTCTAAAATTTTCAAATTATTCGGAAATTTGACATCCGAGGTCCAGACCCTTGAAAATGGTCAACATGACCGAAAATCAAATGAAAAATACGTTTATGTAGGTATATCTTATGTTTACTGTACATCATTCGAATTTAGACACAAAATCTCATTGGAAACTATATTTTGCAGAATAAAAACTTTCTGAAACTAATATACAATACAATTCCTATTGAAGTGGATTACTAAAAATTCTTCTTTTCCAATGCTGGTTTCTTTTAAAAATTGCATTGTTCCCAAACAATGTTATTCTCAAGAATGAGAAGAAAAATTGAAAAACTCGGTTATGTTTAACACGTTCTCCCGTTTTTTTTACATCTCTCCCATCGCCGACAAAGATGCGAAAATAGGCGTGAGCCATTCAGAAATAATAGAGATGCGCGGTCCCGCCGCAGC</canonical>
            <polymorphic>AAGTGTTTTGTCAGTTGACACATTTATAATATCTTGTATGAGAATTGAGACAATTGAGCTCAAGTTTGACAGTGTGGGCTTATAGTAAATCACTACGAAATTTTCAAATGTTCATCTAGATTTTGTCTGAATGGGAATGAACATAATAATTAGTGAACAAACAAAAAAACAGAAACTGAAATAATTTTCAGCAAATTGAAGTAAACAAATAACGGATGTCATTCTTTCTTTTTGACCTAGAGAAAAGTTGTTGAATTCCAAATTTTTTAGATATCAAAAATATAATTTCGATTTTAATTACTGTTGAAAAAGGGAAGAACCTACAGCTGTTCAATATAACCCAATATTTGAGCTTATGGGTTGAACACTTCTTTAAAATTTTTCCAAGAAAAGGATATCATATGCGGCCAAATTCACGGAATTTTCTTGTATACATTTTTACGTCTACAATACAAAAACGGACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTRAAAAACTAGGAATTTATTAGAAGTTCTGCACATTCAAAGTTATCCATCTATGTATGCTTCACACTCTCTAAAATTTTCAAATTATTCGGAAATTTGACATCCGAGGTCCAGACCCTTGAAAATGGTCAACATGACCGAAAATCAAATGAAAAATACGTTTATGTAGGTATATCTTATGTTTACTGTACATCATTCGAATTTAGACACAAAATCTCATTGGAAACTATATTTTGCAGAATAAAAACTTTCTGAAACTAATATACAATACAATTCCTATTGAAGTGGATTACTAAAAATTCTTCTTTTCCAATGCTGGTTTCTTTTAAAAATTGCATTGTTCCCAAACAATGTTATTCTCAAGAATGAGAAGAAAAATTGAAAAACTCGGTTATGTTTAACACGTTCTCCCGTTTTTTTTACATCTCTCCCATCGCCGACAAAGATGCGAAAATAGGCGTGAGCCATTCAGAAATAATAGAGATGCGCGGTCCCGCCGCAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTTTTCCAAGAAAAGGATA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCGAATGATGTACAGTAAAC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>AAAATTTTTCCAAGAAAAGGATATCATATGCGGCCAAATTCACGGAATTTTCTTGTATACATTTTTACGTCTACAATACAAAAACGGACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTGAAAAACTAGGAATTTATTAGAAGTTCTGCACATTCAAAGTTATCCATCTATGTATGCTTCACACTCTCTAAAATTTTCAAATTATTCGGAAATTTGACATCCGAGGTCCAGACCCTTGAAAATGGTCAACATGACCGAAAATCAAATGAAAAATACGTTTATGTAGGTATATCTTATGTTTACTGTACATCATTCGAATTT</canonical_amplicon>
		<polymorphic_amplicon>AAAATTTTTCCAAGAAAAGGATATCATATGCGGCCAAATTCACGGAATTTTCTTGTATACATTTTTACGTCTACAATACAAAAACGGACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTRAAAAACTAGGAATTTATTAGAAGTTCTGCACATTCAAAGTTATCCATCTATGTATGCTTCACACTCTCTAAAATTTTCAAATTATTCGGAAATTTGACATCCGAGGTCCAGACCCTTGAAAATGGTCAACATGACCGAAAATCAAATGAAAAATACGTTTATGTAGGTATATCTTATGTTTACTGTACATCATTCGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34884</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>182030</contig_pos>
        <strand></strand>
        <context>raaaaactag[G/A]aatttattag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTGAAAAACTAG</left_flank>
        <right_flank>AATTTATTAGAAGTTCTGCACATTCAAAGTTATCCATCTATGTATGCTTC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGTTGACACATTTATAATATCTTGTATGAGAATTGAGACAATTGAGCTCAAGTTTGACAGTGTGGGCTTATAGTAAATCACTACGAAATTTTCAAATGTTCATCTAGATTTTGTCTGAATGGGAATGAACATAATAATTAGTGAACAAACAAAAAAACAGAAACTGAAATAATTTTCAGCAAATTGAAGTAAACAAATAACGGATGTCATTCTTTCTTTTTGACCTAGAGAAAAGTTGTTGAATTCCAAATTTTTTAGATATCAAAAATATAATTTCGATTTTAATTACTGTTGAAAAAGGGAAGAACCTACAGCTGTTCAATATAACCCAATATTTGAGCTTATGGGTTGAACACTTCTTTAAAATTTTTCCAAGAAAAGGATATCATATGCGGCCAAATTCACGGAATTTTCTTGTATACATTTTTACGTCTACAATACAAAAACGGACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTGAAAAACTAGGAATTTATTAGAAGTTCTGCACATTCAAAGTTATCCATCTATGTATGCTTCACACTCTCTAAAATTTTCAAATTATTCGGAAATTTGACATCCGAGGTCCAGACCCTTGAAAATGGTCAACATGACCGAAAATCAAATGAAAAATACGTTTATGTAGGTATATCTTATGTTTACTGTACATCATTCGAATTTAGACACAAAATCTCATTGGAAACTATATTTTGCAGAATAAAAACTTTCTGAAACTAATATACAATACAATTCCTATTGAAGTGGATTACTAAAAATTCTTCTTTTCCAATGCTGGTTTCTTTTAAAAATTGCATTGTTCCCAAACAATGTTATTCTCAAGAATGAGAAGAAAAATTGAAAAACTCGGTTATGTTTAACACGTTCTCCCGTTTTTTTTACATCTCTCCCATCGCCGACAAAGATGCGAAAATAGGCGTGAGCCATTCAGAAATAATAGAGATGCGCGGTCCCGCCGCAGCTCTGCGCCGG</canonical>
            <polymorphic>TCAGTTGACACATTTATAATATCTTGTATGAGAATTGAGACAATTGAGCTCAAGTTTGACAGTGTGGGCTTATAGTAAATCACTACGAAATTTTCAAATGTTCATCTAGATTTTGTCTGAATGGGAATGAACATAATAATTAGTGAACAAACAAAAAAACAGAAACTGAAATAATTTTCAGCAAATTGAAGTAAACAAATAACGGATGTCATTCTTTCTTTTTGACCTAGAGAAAAGTTGTTGAATTCCAAATTTTTTAGATATCAAAAATATAATTTCGATTTTAATTACTGTTGAAAAAGGGAAGAACCTACAGCTGTTCAATATAACCCAATATTTGAGCTTATGGGTTGAACACTTCTTTAAAATTTTTCCAAGAAAAGGATATCATATGCGGCCAAATTCACGGAATTTTCTTGTATACATTTTTACGTCTACAATACAAAAACGGACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTGAAAAACTAGRAATTTATTAGAAGTTCTGCACATTCAAAGTTATCCATCTATGTATGCTTCACACTCTCTAAAATTTTCAAATTATTCGGAAATTTGACATCCGAGGTCCAGACCCTTGAAAATGGTCAACATGACCGAAAATCAAATGAAAAATACGTTTATGTAGGTATATCTTATGTTTACTGTACATCATTCGAATTTAGACACAAAATCTCATTGGAAACTATATTTTGCAGAATAAAAACTTTCTGAAACTAATATACAATACAATTCCTATTGAAGTGGATTACTAAAAATTCTTCTTTTCCAATGCTGGTTTCTTTTAAAAATTGCATTGTTCCCAAACAATGTTATTCTCAAGAATGAGAAGAAAAATTGAAAAACTCGGTTATGTTTAACACGTTCTCCCGTTTTTTTTACATCTCTCCCATCGCCGACAAAGATGCGAAAATAGGCGTGAGCCATTCAGAAATAATAGAGATGCGCGGTCCCGCCGCAGCTCTGCGCCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>216 155 116 106 98 91 88 61 34 19 9 7</canonical_bands>
                <polymorphic_bands>216 155 152 116 106 98 88 34 19 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTTTTCCAAGAAAAGGATA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCGAATGATGTACAGTAAAC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>AAAATTTTTCCAAGAAAAGGATATCATATGCGGCCAAATTCACGGAATTTTCTTGTATACATTTTTACGTCTACAATACAAAAACGGACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTGAAAAACTAGGAATTTATTAGAAGTTCTGCACATTCAAAGTTATCCATCTATGTATGCTTCACACTCTCTAAAATTTTCAAATTATTCGGAAATTTGACATCCGAGGTCCAGACCCTTGAAAATGGTCAACATGACCGAAAATCAAATGAAAAATACGTTTATGTAGGTATATCTTATGTTTACTGTACATCATTCGAATTT</canonical_amplicon>
		<polymorphic_amplicon>AAAATTTTTCCAAGAAAAGGATATCATATGCGGCCAAATTCACGGAATTTTCTTGTATACATTTTTACGTCTACAATACAAAAACGGACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTGAAAAACTAGRAATTTATTAGAAGTTCTGCACATTCAAAGTTATCCATCTATGTATGCTTCACACTCTCTAAAATTTTCAAATTATTCGGAAATTTGACATCCGAGGTCCAGACCCTTGAAAATGGTCAACATGACCGAAAATCAAATGAAAAATACGTTTATGTAGGTATATCTTATGTTTACTGTACATCATTCGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34885</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>182065</contig_pos>
        <strand></strand>
        <context>caaagttatc[C/A]atctatgtat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATACTGAAAAACTAGGAATTTATTAGAAGTTCTGCACATTCAAAGTTATC</left_flank>
        <right_flank>ATCTATGTATGCTTCACACTCTCTAAAATTTTCAAATTATTCGGAAATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGACAATTGAGCTCAAGTTTGACAGTGTGGGCTTATAGTAAATCACTACGAAATTTTCAAATGTTCATCTAGATTTTGTCTGAATGGGAATGAACATAATAATTAGTGAACAAACAAAAAAACAGAAACTGAAATAATTTTCAGCAAATTGAAGTAAACAAATAACGGATGTCATTCTTTCTTTTTGACCTAGAGAAAAGTTGTTGAATTCCAAATTTTTTAGATATCAAAAATATAATTTCGATTTTAATTACTGTTGAAAAAGGGAAGAACCTACAGCTGTTCAATATAACCCAATATTTGAGCTTATGGGTTGAACACTTCTTTAAAATTTTTCCAAGAAAAGGATATCATATGCGGCCAAATTCACGGAATTTTCTTGTATACATTTTTACGTCTACAATACAAAAACGGACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTGAAAAACTAGGAATTTATTAGAAGTTCTGCACATTCAAAGTTATCCATCTATGTATGCTTCACACTCTCTAAAATTTTCAAATTATTCGGAAATTTGACATCCGAGGTCCAGACCCTTGAAAATGGTCAACATGACCGAAAATCAAATGAAAAATACGTTTATGTAGGTATATCTTATGTTTACTGTACATCATTCGAATTTAGACACAAAATCTCATTGGAAACTATATTTTGCAGAATAAAAACTTTCTGAAACTAATATACAATACAATTCCTATTGAAGTGGATTACTAAAAATTCTTCTTTTCCAATGCTGGTTTCTTTTAAAAATTGCATTGTTCCCAAACAATGTTATTCTCAAGAATGAGAAGAAAAATTGAAAAACTCGGTTATGTTTAACACGTTCTCCCGTTTTTTTTACATCTCTCCCATCGCCGACAAAGATGCGAAAATAGGCGTGAGCCATTCAGAAATAATAGAGATGCGCGGTCCCGCCGCAGCTCTGCGCCGGACAGCAAGATGACCACAAAAGTAAAGCTTATAGGG</canonical>
            <polymorphic>TGAGACAATTGAGCTCAAGTTTGACAGTGTGGGCTTATAGTAAATCACTACGAAATTTTCAAATGTTCATCTAGATTTTGTCTGAATGGGAATGAACATAATAATTAGTGAACAAACAAAAAAACAGAAACTGAAATAATTTTCAGCAAATTGAAGTAAACAAATAACGGATGTCATTCTTTCTTTTTGACCTAGAGAAAAGTTGTTGAATTCCAAATTTTTTAGATATCAAAAATATAATTTCGATTTTAATTACTGTTGAAAAAGGGAAGAACCTACAGCTGTTCAATATAACCCAATATTTGAGCTTATGGGTTGAACACTTCTTTAAAATTTTTCCAAGAAAAGGATATCATATGCGGCCAAATTCACGGAATTTTCTTGTATACATTTTTACGTCTACAATACAAAAACGGACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTGAAAAACTAGGAATTTATTAGAAGTTCTGCACATTCAAAGTTATCMATCTATGTATGCTTCACACTCTCTAAAATTTTCAAATTATTCGGAAATTTGACATCCGAGGTCCAGACCCTTGAAAATGGTCAACATGACCGAAAATCAAATGAAAAATACGTTTATGTAGGTATATCTTATGTTTACTGTACATCATTCGAATTTAGACACAAAATCTCATTGGAAACTATATTTTGCAGAATAAAAACTTTCTGAAACTAATATACAATACAATTCCTATTGAAGTGGATTACTAAAAATTCTTCTTTTCCAATGCTGGTTTCTTTTAAAAATTGCATTGTTCCCAAACAATGTTATTCTCAAGAATGAGAAGAAAAATTGAAAAACTCGGTTATGTTTAACACGTTCTCCCGTTTTTTTTACATCTCTCCCATCGCCGACAAAGATGCGAAAATAGGCGTGAGCCATTCAGAAATAATAGAGATGCGCGGTCCCGCCGCAGCTCTGCGCCGGACAGCAAGATGACCACAAAAGTAAAGCTTATAGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTTTTCCAAGAAAAGGATA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCGAATGATGTACAGTAAAC</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>AAAATTTTTCCAAGAAAAGGATATCATATGCGGCCAAATTCACGGAATTTTCTTGTATACATTTTTACGTCTACAATACAAAAACGGACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTGAAAAACTAGGAATTTATTAGAAGTTCTGCACATTCAAAGTTATCCATCTATGTATGCTTCACACTCTCTAAAATTTTCAAATTATTCGGAAATTTGACATCCGAGGTCCAGACCCTTGAAAATGGTCAACATGACCGAAAATCAAATGAAAAATACGTTTATGTAGGTATATCTTATGTTTACTGTACATCATTCGAATTT</canonical_amplicon>
		<polymorphic_amplicon>AAAATTTTTCCAAGAAAAGGATATCATATGCGGCCAAATTCACGGAATTTTCTTGTATACATTTTTACGTCTACAATACAAAAACGGACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTGAAAAACTAGGAATTTATTAGAAGTTCTGCACATTCAAAGTTATCMATCTATGTATGCTTCACACTCTCTAAAATTTTCAAATTATTCGGAAATTTGACATCCGAGGTCCAGACCCTTGAAAATGGTCAACATGACCGAAAATCAAATGAAAAATACGTTTATGTAGGTATATCTTATGTTTACTGTACATCATTCGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34886</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>182382</contig_pos>
        <strand>+</strand>
        <context>TATTCTCAAG[A/G]ATGAGAARAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTGGTTTCTTTTAAAAATTGCATTGTTCCCAAACAATGTTATTCTCAAG</left_flank>
        <right_flank>ATGAGAAGAAAAATTGAAAAACTCGGTTATGTTTAACACGTTCTCCCGTT</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACACTTCTTTAAAATTTTTCCAAGAAAAGGATATCATATGCGGCCAAATTCACGGAATTTTCTTGTATACATTTTTACGTCTACAATACAAAAACGGACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTGAAAAACTAGGAATTTATTAGAAGTTCTGCACATTCAAAGTTATCCATCTATGTATGCTTCACACTCTCTAAAATTTTCAAATTATTCGGAAATTTGACATCCGAGGTCCAGACCCTTGAAAATGGTCAACATGACCGAAAATCAAATGAAAAATACGTTTATGTAGGTATATCTTATGTTTACTGTACATCATTCGAATTTAGACACAAAATCTCATTGGAAACTATATTTTGCAGAATAAAAACTTTCTGAAACTAATATACAATACAATTCCTATTGAAGTGGATTACTAAAAATTCTTCTTTTCCAATGCTGGTTTCTTTTAAAAATTGCATTGTTCCCAAACAATGTTATTCTCAAGAATGAGAAGAAAAATTGAAAAACTCGGTTATGTTTAACACGTTCTCCCGTTTTTTTTACATCTCTCCCATCGCCGACAAAGATGCGAAAATAGGCGTGAGCCATTCAGAAATAATAGAGATGCGCGGTCCCGCCGCAGCTCTGCGCCGGACAGCAAGATGACCACAAAAGTAAAGCTTATAGGGACCACAAAAATCGAAAGAAGTGTAGAAGAAGAAAACGAAGAAAAAAGGAGCAAGAAAAAAAATAGGAGAGATGTAGACGAAGAGCAAAATAGGGATGAGAAGAGAAGGCGAAGGCCTGGGGGTGGCCGCCATGCTTTTTCGTTTCGCACTTCTTTTTTTTCGCTCCTCATTCCTCCTAGAAGAAAGTGCCCCACCCTTTCTTCTGCCCGTAATAGGAATGAAATGTGGAATAGTATGCAAAAAGTTTTGGGGAAGTGCATAAATTGATGTGAATACGCGGAGGAGAGGGGCGTGGTCCCATCCACTCTTCTTTTCTT</canonical>
            <polymorphic>GAACACTTCTTTAAAATTTTTCCAAGAAAAGGATATCATATGCGGCCAAATTCACGGAATTTTCTTGTATACATTTTTACGTCTACAATACAAAAACGGACCAAAAGAAGGGGTGTCCTTCAGAAATCGGCAATACTGAAAAACTAGGAATTTATTAGAAGTTCTGCACATTCAAAGTTATCCATCTATGTATGCTTCACACTCTCTAAAATTTTCAAATTATTCGGAAATTTGACATCCGAGGTCCAGACCCTTGAAAATGGTCAACATGACCGAAAATCAAATGAAAAATACGTTTATGTAGGTATATCTTATGTTTACTGTACATCATTCGAATTTAGACACAAAATCTCATTGGAAACTATATTTTGCAGAATAAAAACTTTCTGAAACTAATATACAATACAATTCCTATTGAAGTGGATTACTAAAAATTCTTCTTTTCCAATGCTGGTTTCTTTTAAAAATTGCATTGTTCCCAAACAATGTTATTCTCAAGRATGAGAAGAAAAATTGAAAAACTCGGTTATGTTTAACACGTTCTCCCGTTTTTTTTACATCTCTCCCATCGCCGACAAAGATGCGAAAATAGGCGTGAGCCATTCAGAAATAATAGAGATGCGCGGTCCCGCCGCAGCTCTGCGCCGGACAGCAAGATGACCACAAAAGTAAAGCTTATAGGGACCACAAAAATCGAAAGAAGTGTAGAAGAAGAAAACGAAGAAAAAAGGAGCAAGAAAAAAAATAGGAGAGATGTAGACGAAGAGCAAAATAGGGATGAGAAGAGAAGGCGAAGGCCTGGGGGTGGCCGCCATGCTTTTTCGTTTCGCACTTCTTTTTTTTCGCTCCTCATTCCTCCTAGAAGAAAGTGCCCCACCCTTTCTTCTGCCCGTAATAGGAATGAAATGTGGAATAGTATGCAAAAAGTTTTGGGGAAGTGCATAAATTGATGTGAATACGCGGAGGAGAGGGGCGTGGTCCCATCCACTCTTCTTTTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>504 250 246</canonical_bands>
                <polymorphic_bands>754 246</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAAAAATTCTTCTTTTCCAATG</pcr_primer_p1>
		<pcr_primer_p2>TAAGCTTTACTTTTGTGGTCATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTAAAAATTCTTCTTTTCCAATGCTGGTTTCTTTTAAAAATTGCATTGTTCCCAAACAATGTTATTCTCAAGAATGAGAAGAAAAATTGAAAAACTCGGTTATGTTTAACACGTTCTCCCGTTTTTTTTACATCTCTCCCATCGCCGACAAAGATGCGAAAATAGGCGTGAGCCATTCAGAAATAATAGAGATGCGCGGTCCCGCCGCAGCTCTGCGCCGGACAGCAAGATGACCACAAAAGTAAAGCTTA</canonical_amplicon>
		<polymorphic_amplicon>CTAAAAATTCTTCTTTTCCAATGCTGGTTTCTTTTAAAAATTGCATTGTTCCCAAACAATGTTATTCTCAAGRATGAGAAGAAAAATTGAAAAACTCGGTTATGTTTAACACGTTCTCCCGTTTTTTTTACATCTCTCCCATCGCCGACAAAGATGCGAAAATAGGCGTGAGCCATTCAGAAATAATAGAGATGCGCGGTCCCGCCGCAGCTCTGCGCCGGACAGCAAGATGACCACAAAAGTAAAGCTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34887</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>184102</contig_pos>
        <strand></strand>
        <context>gaggagctac[C/A]aktttygaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TGAGAATGAGACATTTTCAAATATGTGTTCTGATTTTGCTGAGGAGCTAC</left_flank>
        <right_flank>AGTTTTGAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAAATG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCGGATGAGAAGAGGATGAAACATGACACTGGACATGGATATAGGAAGAGATGGAGGAAGGAAGGATGACGATGGGGTTAACAAGTGCTTGAATAAATAGGTCTGTCTGGGATTTTGGAATTTTTTGAAATTTGTGAAACTATATCGAGAGGTTGAAAAATCGAAATTTTGAAGTCTCTGACTATTTATTGAAGCATATGACTATAATTTCCTAAAAACCGTATTCCTTACAACAGAACGTCAATCTCATAGAATTTGCATCACAAGATTAATTATTTCTAAAAGATTTTCTATCCGGAAAATACTGATGGTATTTTGCCAAAAAGATTTCCATTTGACAAACTCTGTGTATCTTTTACAGGATGTGAGATACAGTACCGTTCACTAACTAGGGAAGGTTGTAATTGGGGGGTGGAACTTCGGTATGAGACCTATATCATTCGAAAGCTGAGAATGAGACATTTTCAAATATGTGTTCTGATTTTGCTGAGGAGCTACCAGTTTTGAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAAATGGGGACCCCATGGTGATTTTTTTTGCGAAATTAAAAAAAAAACTTGAAAACTTTATGGGATCATTTTCTTTTATTCAAAACTTATCTATATCTACTAGGCTGACGCTATAATAGAGGGAATTCGGTGAATTTCACTGAACCAGATATTGAGAGAATGTTTAATAATAATAATCGGTTCCAAACAAATTTCAGGTTCAAAATTTACCAAAAATCTATGTTTTCTGGATCTTCTATTTTTAAAAACACGATTTTCTAATGCTTGTAAATGTTTGAAGTTCAAAAAATATGAAAATATAAAATTTGTACTATTAGGTTGGAAGGAAAGTAACTGTCCATTTTTTAAATAACACAAAAACAAGAATTATCCAAGATTGGAGTATGCATCGTCGTGGTCCAGGACATGCTGGCAACAGTCACGAAACTCGTGGATACCATACCTCCTAAAGCCTCC</canonical>
            <polymorphic>GGCGGATGAGAAGAGGATGAAACATGACACTGGACATGGATATAGGAAGAGATGGAGGAAGGAAGGATGACGATGGGGTTAACAAGTGCTTGAATAAATAGGTCTGTCTGGGATTTTGGAATTTTTTGAAATTTGTGAAACTATATCGAGAGGTTGAAAAATCGAAATTTTGAAGTCTCTGACTATTTATTGAAGCATATGACTATAATTTCCTAAAAACCGTATTCCTTACAACAGAACGTCAATCTCATAGAATTTGCATCACAAGATTAATTATTTCTAAAAGATTTTCTATCCGGAAAATACTGATGGTATTTTGCCAAAAAGATTTCCATTTGACAAACTCTGTGTATCTTTTACAGGATGTGAGATACAGTACCGTTCACTAACTAGGGAAGGTTGTAATTGGGGGGTGGAACTTCGGTATGAGACCTATATCATTCGAAAGCTGAGAATGAGACATTTTCAAATATGTGTTCTGATTTTGCTGAGGAGCTACMAGTTTTGAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAAATGGGGACCCCATGGTGATTTTTTTTGCGAAATTAAAAAAAAAACTTGAAAACTTTATGGGATCATTTTCTTTTATTCAAAACTTATCTATATCTACTAGGCTGACGCTATAATAGAGGGAATTCGGTGAATTTCACTGAACCAGATATTGAGAGAATGTTTAATAATAATAATCGGTTCCAAACAAATTTCAGGTTCAAAATTTACCAAAAATCTATGTTTTCTGGATCTTCTATTTTTAAAAACACGATTTTCTAATGCTTGTAAATGTTTGAAGTTCAAAAAATATGAAAATATAAAATTTGTACTATTAGGTTGGAAGGAAAGTAACTGTCCATTTTTTAAATAACACAAAAACAAGAATTATCCAAGATTGGAGTATGCATCGTCGTGGTCCAGGACATGCTGGCAACAGTCACGAAACTCGTGGATACCATACCTCCTAAAGCCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTACAGGATGTGAGATACAG</pcr_primer_p1>
		<pcr_primer_p2>CTATTATAGCGTCAGCCTAGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTACAGGATGTGAGATACAGTACCGTTCACTAACTAGGGAAGGTTGTAATTGGGGGGTGGAACTTCGGTATGAGACCTATATCATTCGAAAGCTGAGAATGAGACATTTTCAAATATGTGTTCTGATTTTGCTGAGGAGCTACCAGTTTTGAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAAATGGGGACCCCATGGTGATTTTTTTTGCGAAATTAAAAAAAAAACTTGAAAACTTTATGGGATCATTTTCTTTTATTCAAAACTTATCTATATCTACTAGGCTGACGCTATAATAG</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTACAGGATGTGAGATACAGTACCGTTCACTAACTAGGGAAGGTTGTAATTGGGGGGTGGAACTTCGGTATGAGACCTATATCATTCGAAAGCTGAGAATGAGACATTTTCAAATATGTGTTCTGATTTTGCTGAGGAGCTACMAGTTTTGAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAAATGGGGACCCCATGGTGATTTTTTTTGCGAAATTAAAAAAAAAACTTGAAAACTTTATGGGATCATTTTCTTTTATTCAAAACTTATCTATATCTACTAGGCTGACGCTATAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34888</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>184104</contig_pos>
        <strand></strand>
        <context>ggagctacma[G/T]tttygaaaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGAATGAGACATTTTCAAATATGTGTTCTGATTTTGCTGAGGAGCTACCA</left_flank>
        <right_flank>TTTTGAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAAATGGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGATGAGAAGAGGATGAAACATGACACTGGACATGGATATAGGAAGAGATGGAGGAAGGAAGGATGACGATGGGGTTAACAAGTGCTTGAATAAATAGGTCTGTCTGGGATTTTGGAATTTTTTGAAATTTGTGAAACTATATCGAGAGGTTGAAAAATCGAAATTTTGAAGTCTCTGACTATTTATTGAAGCATATGACTATAATTTCCTAAAAACCGTATTCCTTACAACAGAACGTCAATCTCATAGAATTTGCATCACAAGATTAATTATTTCTAAAAGATTTTCTATCCGGAAAATACTGATGGTATTTTGCCAAAAAGATTTCCATTTGACAAACTCTGTGTATCTTTTACAGGATGTGAGATACAGTACCGTTCACTAACTAGGGAAGGTTGTAATTGGGGGGTGGAACTTCGGTATGAGACCTATATCATTCGAAAGCTGAGAATGAGACATTTTCAAATATGTGTTCTGATTTTGCTGAGGAGCTACCAGTTTTGAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAAATGGGGACCCCATGGTGATTTTTTTTGCGAAATTAAAAAAAAAACTTGAAAACTTTATGGGATCATTTTCTTTTATTCAAAACTTATCTATATCTACTAGGCTGACGCTATAATAGAGGGAATTCGGTGAATTTCACTGAACCAGATATTGAGAGAATGTTTAATAATAATAATCGGTTCCAAACAAATTTCAGGTTCAAAATTTACCAAAAATCTATGTTTTCTGGATCTTCTATTTTTAAAAACACGATTTTCTAATGCTTGTAAATGTTTGAAGTTCAAAAAATATGAAAATATAAAATTTGTACTATTAGGTTGGAAGGAAAGTAACTGTCCATTTTTTAAATAACACAAAAACAAGAATTATCCAAGATTGGAGTATGCATCGTCGTGGTCCAGGACATGCTGGCAACAGTCACGAAACTCGTGGATACCATACCTCCTAAAGCCTCCTA</canonical>
            <polymorphic>CGGATGAGAAGAGGATGAAACATGACACTGGACATGGATATAGGAAGAGATGGAGGAAGGAAGGATGACGATGGGGTTAACAAGTGCTTGAATAAATAGGTCTGTCTGGGATTTTGGAATTTTTTGAAATTTGTGAAACTATATCGAGAGGTTGAAAAATCGAAATTTTGAAGTCTCTGACTATTTATTGAAGCATATGACTATAATTTCCTAAAAACCGTATTCCTTACAACAGAACGTCAATCTCATAGAATTTGCATCACAAGATTAATTATTTCTAAAAGATTTTCTATCCGGAAAATACTGATGGTATTTTGCCAAAAAGATTTCCATTTGACAAACTCTGTGTATCTTTTACAGGATGTGAGATACAGTACCGTTCACTAACTAGGGAAGGTTGTAATTGGGGGGTGGAACTTCGGTATGAGACCTATATCATTCGAAAGCTGAGAATGAGACATTTTCAAATATGTGTTCTGATTTTGCTGAGGAGCTACCAKTTTTGAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAAATGGGGACCCCATGGTGATTTTTTTTGCGAAATTAAAAAAAAAACTTGAAAACTTTATGGGATCATTTTCTTTTATTCAAAACTTATCTATATCTACTAGGCTGACGCTATAATAGAGGGAATTCGGTGAATTTCACTGAACCAGATATTGAGAGAATGTTTAATAATAATAATCGGTTCCAAACAAATTTCAGGTTCAAAATTTACCAAAAATCTATGTTTTCTGGATCTTCTATTTTTAAAAACACGATTTTCTAATGCTTGTAAATGTTTGAAGTTCAAAAAATATGAAAATATAAAATTTGTACTATTAGGTTGGAAGGAAAGTAACTGTCCATTTTTTAAATAACACAAAAACAAGAATTATCCAAGATTGGAGTATGCATCGTCGTGGTCCAGGACATGCTGGCAACAGTCACGAAACTCGTGGATACCATACCTCCTAAAGCCTCCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTACAGGATGTGAGATACAG</pcr_primer_p1>
		<pcr_primer_p2>CTATTATAGCGTCAGCCTAGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTACAGGATGTGAGATACAGTACCGTTCACTAACTAGGGAAGGTTGTAATTGGGGGGTGGAACTTCGGTATGAGACCTATATCATTCGAAAGCTGAGAATGAGACATTTTCAAATATGTGTTCTGATTTTGCTGAGGAGCTACCAGTTTTGAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAAATGGGGACCCCATGGTGATTTTTTTTGCGAAATTAAAAAAAAAACTTGAAAACTTTATGGGATCATTTTCTTTTATTCAAAACTTATCTATATCTACTAGGCTGACGCTATAATAG</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTACAGGATGTGAGATACAGTACCGTTCACTAACTAGGGAAGGTTGTAATTGGGGGGTGGAACTTCGGTATGAGACCTATATCATTCGAAAGCTGAGAATGAGACATTTTCAAATATGTGTTCTGATTTTGCTGAGGAGCTACCAKTTTTGAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAAATGGGGACCCCATGGTGATTTTTTTTGCGAAATTAAAAAAAAAACTTGAAAACTTTATGGGATCATTTTCTTTTATTCAAAACTTATCTATATCTACTAGGCTGACGCTATAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34889</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>184108</contig_pos>
        <strand></strand>
        <context>ctacmakttt[T/C]gaaaaaatcg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGAGACATTTTCAAATATGTGTTCTGATTTTGCTGAGGAGCTACCAGTTT</left_flank>
        <right_flank>GAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAAATGGGGACC</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGAAGAGGATGAAACATGACACTGGACATGGATATAGGAAGAGATGGAGGAAGGAAGGATGACGATGGGGTTAACAAGTGCTTGAATAAATAGGTCTGTCTGGGATTTTGGAATTTTTTGAAATTTGTGAAACTATATCGAGAGGTTGAAAAATCGAAATTTTGAAGTCTCTGACTATTTATTGAAGCATATGACTATAATTTCCTAAAAACCGTATTCCTTACAACAGAACGTCAATCTCATAGAATTTGCATCACAAGATTAATTATTTCTAAAAGATTTTCTATCCGGAAAATACTGATGGTATTTTGCCAAAAAGATTTCCATTTGACAAACTCTGTGTATCTTTTACAGGATGTGAGATACAGTACCGTTCACTAACTAGGGAAGGTTGTAATTGGGGGGTGGAACTTCGGTATGAGACCTATATCATTCGAAAGCTGAGAATGAGACATTTTCAAATATGTGTTCTGATTTTGCTGAGGAGCTACCAGTTTTGAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAAATGGGGACCCCATGGTGATTTTTTTTGCGAAATTAAAAAAAAAACTTGAAAACTTTATGGGATCATTTTCTTTTATTCAAAACTTATCTATATCTACTAGGCTGACGCTATAATAGAGGGAATTCGGTGAATTTCACTGAACCAGATATTGAGAGAATGTTTAATAATAATAATCGGTTCCAAACAAATTTCAGGTTCAAAATTTACCAAAAATCTATGTTTTCTGGATCTTCTATTTTTAAAAACACGATTTTCTAATGCTTGTAAATGTTTGAAGTTCAAAAAATATGAAAATATAAAATTTGTACTATTAGGTTGGAAGGAAAGTAACTGTCCATTTTTTAAATAACACAAAAACAAGAATTATCCAAGATTGGAGTATGCATCGTCGTGGTCCAGGACATGCTGGCAACAGTCACGAAACTCGTGGATACCATACCTCCTAAAGCCTCCTAAATC</canonical>
            <polymorphic>TGAGAAGAGGATGAAACATGACACTGGACATGGATATAGGAAGAGATGGAGGAAGGAAGGATGACGATGGGGTTAACAAGTGCTTGAATAAATAGGTCTGTCTGGGATTTTGGAATTTTTTGAAATTTGTGAAACTATATCGAGAGGTTGAAAAATCGAAATTTTGAAGTCTCTGACTATTTATTGAAGCATATGACTATAATTTCCTAAAAACCGTATTCCTTACAACAGAACGTCAATCTCATAGAATTTGCATCACAAGATTAATTATTTCTAAAAGATTTTCTATCCGGAAAATACTGATGGTATTTTGCCAAAAAGATTTCCATTTGACAAACTCTGTGTATCTTTTACAGGATGTGAGATACAGTACCGTTCACTAACTAGGGAAGGTTGTAATTGGGGGGTGGAACTTCGGTATGAGACCTATATCATTCGAAAGCTGAGAATGAGACATTTTCAAATATGTGTTCTGATTTTGCTGAGGAGCTACCAGTTTYGAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAAATGGGGACCCCATGGTGATTTTTTTTGCGAAATTAAAAAAAAAACTTGAAAACTTTATGGGATCATTTTCTTTTATTCAAAACTTATCTATATCTACTAGGCTGACGCTATAATAGAGGGAATTCGGTGAATTTCACTGAACCAGATATTGAGAGAATGTTTAATAATAATAATCGGTTCCAAACAAATTTCAGGTTCAAAATTTACCAAAAATCTATGTTTTCTGGATCTTCTATTTTTAAAAACACGATTTTCTAATGCTTGTAAATGTTTGAAGTTCAAAAAATATGAAAATATAAAATTTGTACTATTAGGTTGGAAGGAAAGTAACTGTCCATTTTTTAAATAACACAAAAACAAGAATTATCCAAGATTGGAGTATGCATCGTCGTGGTCCAGGACATGCTGGCAACAGTCACGAAACTCGTGGATACCATACCTCCTAAAGCCTCCTAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTACAGGATGTGAGATACAG</pcr_primer_p1>
		<pcr_primer_p2>CTATTATAGCGTCAGCCTAGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTACAGGATGTGAGATACAGTACCGTTCACTAACTAGGGAAGGTTGTAATTGGGGGGTGGAACTTCGGTATGAGACCTATATCATTCGAAAGCTGAGAATGAGACATTTTCAAATATGTGTTCTGATTTTGCTGAGGAGCTACCAGTTTTGAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAAATGGGGACCCCATGGTGATTTTTTTTGCGAAATTAAAAAAAAAACTTGAAAACTTTATGGGATCATTTTCTTTTATTCAAAACTTATCTATATCTACTAGGCTGACGCTATAATAG</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTACAGGATGTGAGATACAGTACCGTTCACTAACTAGGGAAGGTTGTAATTGGGGGGTGGAACTTCGGTATGAGACCTATATCATTCGAAAGCTGAGAATGAGACATTTTCAAATATGTGTTCTGATTTTGCTGAGGAGCTACCAGTTTYGAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAAATGGGGACCCCATGGTGATTTTTTTTGCGAAATTAAAAAAAAAACTTGAAAACTTTATGGGATCATTTTCTTTTATTCAAAACTTATCTATATCTACTAGGCTGACGCTATAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34890</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>184150</contig_pos>
        <strand></strand>
        <context>caaatgcaaa[A/G]kggggacccc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCAGTTTTGAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAA</left_flank>
        <right_flank>TGGGGACCCCATGGTGATTTTTTTTGCGAAATTAAAAAAAAAACTTGAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGATGGAGGAAGGAAGGATGACGATGGGGTTAACAAGTGCTTGAATAAATAGGTCTGTCTGGGATTTTGGAATTTTTTGAAATTTGTGAAACTATATCGAGAGGTTGAAAAATCGAAATTTTGAAGTCTCTGACTATTTATTGAAGCATATGACTATAATTTCCTAAAAACCGTATTCCTTACAACAGAACGTCAATCTCATAGAATTTGCATCACAAGATTAATTATTTCTAAAAGATTTTCTATCCGGAAAATACTGATGGTATTTTGCCAAAAAGATTTCCATTTGACAAACTCTGTGTATCTTTTACAGGATGTGAGATACAGTACCGTTCACTAACTAGGGAAGGTTGTAATTGGGGGGTGGAACTTCGGTATGAGACCTATATCATTCGAAAGCTGAGAATGAGACATTTTCAAATATGTGTTCTGATTTTGCTGAGGAGCTACCAGTTTTGAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAAATGGGGACCCCATGGTGATTTTTTTTGCGAAATTAAAAAAAAAACTTGAAAACTTTATGGGATCATTTTCTTTTATTCAAAACTTATCTATATCTACTAGGCTGACGCTATAATAGAGGGAATTCGGTGAATTTCACTGAACCAGATATTGAGAGAATGTTTAATAATAATAATCGGTTCCAAACAAATTTCAGGTTCAAAATTTACCAAAAATCTATGTTTTCTGGATCTTCTATTTTTAAAAACACGATTTTCTAATGCTTGTAAATGTTTGAAGTTCAAAAAATATGAAAATATAAAATTTGTACTATTAGGTTGGAAGGAAAGTAACTGTCCATTTTTTAAATAACACAAAAACAAGAATTATCCAAGATTGGAGTATGCATCGTCGTGGTCCAGGACATGCTGGCAACAGTCACGAAACTCGTGGATACCATACCTCCTAAAGCCTCCTAAATCTCCTAAACATCAATAATAAAAGGACCAAATCAGGAGTTTGAG</canonical>
            <polymorphic>GAGATGGAGGAAGGAAGGATGACGATGGGGTTAACAAGTGCTTGAATAAATAGGTCTGTCTGGGATTTTGGAATTTTTTGAAATTTGTGAAACTATATCGAGAGGTTGAAAAATCGAAATTTTGAAGTCTCTGACTATTTATTGAAGCATATGACTATAATTTCCTAAAAACCGTATTCCTTACAACAGAACGTCAATCTCATAGAATTTGCATCACAAGATTAATTATTTCTAAAAGATTTTCTATCCGGAAAATACTGATGGTATTTTGCCAAAAAGATTTCCATTTGACAAACTCTGTGTATCTTTTACAGGATGTGAGATACAGTACCGTTCACTAACTAGGGAAGGTTGTAATTGGGGGGTGGAACTTCGGTATGAGACCTATATCATTCGAAAGCTGAGAATGAGACATTTTCAAATATGTGTTCTGATTTTGCTGAGGAGCTACCAGTTTTGAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAARTGGGGACCCCATGGTGATTTTTTTTGCGAAATTAAAAAAAAAACTTGAAAACTTTATGGGATCATTTTCTTTTATTCAAAACTTATCTATATCTACTAGGCTGACGCTATAATAGAGGGAATTCGGTGAATTTCACTGAACCAGATATTGAGAGAATGTTTAATAATAATAATCGGTTCCAAACAAATTTCAGGTTCAAAATTTACCAAAAATCTATGTTTTCTGGATCTTCTATTTTTAAAAACACGATTTTCTAATGCTTGTAAATGTTTGAAGTTCAAAAAATATGAAAATATAAAATTTGTACTATTAGGTTGGAAGGAAAGTAACTGTCCATTTTTTAAATAACACAAAAACAAGAATTATCCAAGATTGGAGTATGCATCGTCGTGGTCCAGGACATGCTGGCAACAGTCACGAAACTCGTGGATACCATACCTCCTAAAGCCTCCTAAATCTCCTAAACATCAATAATAAAAGGACCAAATCAGGAGTTTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTACAGGATGTGAGATACAG</pcr_primer_p1>
		<pcr_primer_p2>CTATTATAGCGTCAGCCTAGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTACAGGATGTGAGATACAGTACCGTTCACTAACTAGGGAAGGTTGTAATTGGGGGGTGGAACTTCGGTATGAGACCTATATCATTCGAAAGCTGAGAATGAGACATTTTCAAATATGTGTTCTGATTTTGCTGAGGAGCTACCAGTTTTGAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAAATGGGGACCCCATGGTGATTTTTTTTGCGAAATTAAAAAAAAAACTTGAAAACTTTATGGGATCATTTTCTTTTATTCAAAACTTATCTATATCTACTAGGCTGACGCTATAATAG</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTACAGGATGTGAGATACAGTACCGTTCACTAACTAGGGAAGGTTGTAATTGGGGGGTGGAACTTCGGTATGAGACCTATATCATTCGAAAGCTGAGAATGAGACATTTTCAAATATGTGTTCTGATTTTGCTGAGGAGCTACCAGTTTTGAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAARTGGGGACCCCATGGTGATTTTTTTTGCGAAATTAAAAAAAAAACTTGAAAACTTTATGGGATCATTTTCTTTTATTCAAAACTTATCTATATCTACTAGGCTGACGCTATAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34891</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>184151</contig_pos>
        <strand></strand>
        <context>aaatgcaaar[T/G]ggggacccca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CCAGTTTTGAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAAA</left_flank>
        <right_flank>GGGGACCCCATGGTGATTTTTTTTGCGAAATTAAAAAAAAAACTTGAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATGGAGGAAGGAAGGATGACGATGGGGTTAACAAGTGCTTGAATAAATAGGTCTGTCTGGGATTTTGGAATTTTTTGAAATTTGTGAAACTATATCGAGAGGTTGAAAAATCGAAATTTTGAAGTCTCTGACTATTTATTGAAGCATATGACTATAATTTCCTAAAAACCGTATTCCTTACAACAGAACGTCAATCTCATAGAATTTGCATCACAAGATTAATTATTTCTAAAAGATTTTCTATCCGGAAAATACTGATGGTATTTTGCCAAAAAGATTTCCATTTGACAAACTCTGTGTATCTTTTACAGGATGTGAGATACAGTACCGTTCACTAACTAGGGAAGGTTGTAATTGGGGGGTGGAACTTCGGTATGAGACCTATATCATTCGAAAGCTGAGAATGAGACATTTTCAAATATGTGTTCTGATTTTGCTGAGGAGCTACCAGTTTTGAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAAATGGGGACCCCATGGTGATTTTTTTTGCGAAATTAAAAAAAAAACTTGAAAACTTTATGGGATCATTTTCTTTTATTCAAAACTTATCTATATCTACTAGGCTGACGCTATAATAGAGGGAATTCGGTGAATTTCACTGAACCAGATATTGAGAGAATGTTTAATAATAATAATCGGTTCCAAACAAATTTCAGGTTCAAAATTTACCAAAAATCTATGTTTTCTGGATCTTCTATTTTTAAAAACACGATTTTCTAATGCTTGTAAATGTTTGAAGTTCAAAAAATATGAAAATATAAAATTTGTACTATTAGGTTGGAAGGAAAGTAACTGTCCATTTTTTAAATAACACAAAAACAAGAATTATCCAAGATTGGAGTATGCATCGTCGTGGTCCAGGACATGCTGGCAACAGTCACGAAACTCGTGGATACCATACCTCCTAAAGCCTCCTAAATCTCCTAAACATCAATAATAAAAGGACCAAATCAGGAGTTTGAGA</canonical>
            <polymorphic>AGATGGAGGAAGGAAGGATGACGATGGGGTTAACAAGTGCTTGAATAAATAGGTCTGTCTGGGATTTTGGAATTTTTTGAAATTTGTGAAACTATATCGAGAGGTTGAAAAATCGAAATTTTGAAGTCTCTGACTATTTATTGAAGCATATGACTATAATTTCCTAAAAACCGTATTCCTTACAACAGAACGTCAATCTCATAGAATTTGCATCACAAGATTAATTATTTCTAAAAGATTTTCTATCCGGAAAATACTGATGGTATTTTGCCAAAAAGATTTCCATTTGACAAACTCTGTGTATCTTTTACAGGATGTGAGATACAGTACCGTTCACTAACTAGGGAAGGTTGTAATTGGGGGGTGGAACTTCGGTATGAGACCTATATCATTCGAAAGCTGAGAATGAGACATTTTCAAATATGTGTTCTGATTTTGCTGAGGAGCTACCAGTTTTGAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAAAKGGGGACCCCATGGTGATTTTTTTTGCGAAATTAAAAAAAAAACTTGAAAACTTTATGGGATCATTTTCTTTTATTCAAAACTTATCTATATCTACTAGGCTGACGCTATAATAGAGGGAATTCGGTGAATTTCACTGAACCAGATATTGAGAGAATGTTTAATAATAATAATCGGTTCCAAACAAATTTCAGGTTCAAAATTTACCAAAAATCTATGTTTTCTGGATCTTCTATTTTTAAAAACACGATTTTCTAATGCTTGTAAATGTTTGAAGTTCAAAAAATATGAAAATATAAAATTTGTACTATTAGGTTGGAAGGAAAGTAACTGTCCATTTTTTAAATAACACAAAAACAAGAATTATCCAAGATTGGAGTATGCATCGTCGTGGTCCAGGACATGCTGGCAACAGTCACGAAACTCGTGGATACCATACCTCCTAAAGCCTCCTAAATCTCCTAAACATCAATAATAAAAGGACCAAATCAGGAGTTTGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTACAGGATGTGAGATACAG</pcr_primer_p1>
		<pcr_primer_p2>CTATTATAGCGTCAGCCTAGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTACAGGATGTGAGATACAGTACCGTTCACTAACTAGGGAAGGTTGTAATTGGGGGGTGGAACTTCGGTATGAGACCTATATCATTCGAAAGCTGAGAATGAGACATTTTCAAATATGTGTTCTGATTTTGCTGAGGAGCTACCAGTTTTGAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAAATGGGGACCCCATGGTGATTTTTTTTGCGAAATTAAAAAAAAAACTTGAAAACTTTATGGGATCATTTTCTTTTATTCAAAACTTATCTATATCTACTAGGCTGACGCTATAATAG</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTACAGGATGTGAGATACAGTACCGTTCACTAACTAGGGAAGGTTGTAATTGGGGGGTGGAACTTCGGTATGAGACCTATATCATTCGAAAGCTGAGAATGAGACATTTTCAAATATGTGTTCTGATTTTGCTGAGGAGCTACCAGTTTTGAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAAAKGGGGACCCCATGGTGATTTTTTTTGCGAAATTAAAAAAAAAACTTGAAAACTTTATGGGATCATTTTCTTTTATTCAAAACTTATCTATATCTACTAGGCTGACGCTATAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34892</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>184216</contig_pos>
        <strand></strand>
        <context>atgggatcat[T/A]ytcttttatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GATTTTTTTTGCGAAATTAAAAAAAAAACTTGAAAACTTTATGGGATCAT</left_flank>
        <right_flank>TTCTTTTATTCAAAACTTATCTATATCTACTAGGCTGACGCTATAATAGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGAATTTTTTGAAATTTGTGAAACTATATCGAGAGGTTGAAAAATCGAAATTTTGAAGTCTCTGACTATTTATTGAAGCATATGACTATAATTTCCTAAAAACCGTATTCCTTACAACAGAACGTCAATCTCATAGAATTTGCATCACAAGATTAATTATTTCTAAAAGATTTTCTATCCGGAAAATACTGATGGTATTTTGCCAAAAAGATTTCCATTTGACAAACTCTGTGTATCTTTTACAGGATGTGAGATACAGTACCGTTCACTAACTAGGGAAGGTTGTAATTGGGGGGTGGAACTTCGGTATGAGACCTATATCATTCGAAAGCTGAGAATGAGACATTTTCAAATATGTGTTCTGATTTTGCTGAGGAGCTACCAGTTTTGAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAAATGGGGACCCCATGGTGATTTTTTTTGCGAAATTAAAAAAAAAACTTGAAAACTTTATGGGATCATTTTCTTTTATTCAAAACTTATCTATATCTACTAGGCTGACGCTATAATAGAGGGAATTCGGTGAATTTCACTGAACCAGATATTGAGAGAATGTTTAATAATAATAATCGGTTCCAAACAAATTTCAGGTTCAAAATTTACCAAAAATCTATGTTTTCTGGATCTTCTATTTTTAAAAACACGATTTTCTAATGCTTGTAAATGTTTGAAGTTCAAAAAATATGAAAATATAAAATTTGTACTATTAGGTTGGAAGGAAAGTAACTGTCCATTTTTTAAATAACACAAAAACAAGAATTATCCAAGATTGGAGTATGCATCGTCGTGGTCCAGGACATGCTGGCAACAGTCACGAAACTCGTGGATACCATACCTCCTAAAGCCTCCTAAATCTCCTAAACATCAATAATAAAAGGACCAAATCAGGAGTTTGAGAGAGGCGTAAAGAAAAACCGACCAGCTGAAGCGGCTCATACCTTACTTGACTTTCCGTGGAACATA</canonical>
            <polymorphic>TTTGGAATTTTTTGAAATTTGTGAAACTATATCGAGAGGTTGAAAAATCGAAATTTTGAAGTCTCTGACTATTTATTGAAGCATATGACTATAATTTCCTAAAAACCGTATTCCTTACAACAGAACGTCAATCTCATAGAATTTGCATCACAAGATTAATTATTTCTAAAAGATTTTCTATCCGGAAAATACTGATGGTATTTTGCCAAAAAGATTTCCATTTGACAAACTCTGTGTATCTTTTACAGGATGTGAGATACAGTACCGTTCACTAACTAGGGAAGGTTGTAATTGGGGGGTGGAACTTCGGTATGAGACCTATATCATTCGAAAGCTGAGAATGAGACATTTTCAAATATGTGTTCTGATTTTGCTGAGGAGCTACCAGTTTTGAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAAATGGGGACCCCATGGTGATTTTTTTTGCGAAATTAAAAAAAAAACTTGAAAACTTTATGGGATCATWTTCTTTTATTCAAAACTTATCTATATCTACTAGGCTGACGCTATAATAGAGGGAATTCGGTGAATTTCACTGAACCAGATATTGAGAGAATGTTTAATAATAATAATCGGTTCCAAACAAATTTCAGGTTCAAAATTTACCAAAAATCTATGTTTTCTGGATCTTCTATTTTTAAAAACACGATTTTCTAATGCTTGTAAATGTTTGAAGTTCAAAAAATATGAAAATATAAAATTTGTACTATTAGGTTGGAAGGAAAGTAACTGTCCATTTTTTAAATAACACAAAAACAAGAATTATCCAAGATTGGAGTATGCATCGTCGTGGTCCAGGACATGCTGGCAACAGTCACGAAACTCGTGGATACCATACCTCCTAAAGCCTCCTAAATCTCCTAAACATCAATAATAAAAGGACCAAATCAGGAGTTTGAGAGAGGCGTAAAGAAAAACCGACCAGCTGAAGCGGCTCATACCTTACTTGACTTTCCGTGGAACATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTACAGGATGTGAGATACAG</pcr_primer_p1>
		<pcr_primer_p2>AATTCCCTCTATTATAGCGTCAG</pcr_primer_p2>
		<pcr_amplicon_size>319</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTACAGGATGTGAGATACAGTACCGTTCACTAACTAGGGAAGGTTGTAATTGGGGGGTGGAACTTCGGTATGAGACCTATATCATTCGAAAGCTGAGAATGAGACATTTTCAAATATGTGTTCTGATTTTGCTGAGGAGCTACCAGTTTTGAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAAATGGGGACCCCATGGTGATTTTTTTTGCGAAATTAAAAAAAAAACTTGAAAACTTTATGGGATCATTTTCTTTTATTCAAAACTTATCTATATCTACTAGGCTGACGCTATAATAGAGGGAATT</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTACAGGATGTGAGATACAGTACCGTTCACTAACTAGGGAAGGTTGTAATTGGGGGGTGGAACTTCGGTATGAGACCTATATCATTCGAAAGCTGAGAATGAGACATTTTCAAATATGTGTTCTGATTTTGCTGAGGAGCTACCAGTTTTGAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAAATGGGGACCCCATGGTGATTTTTTTTGCGAAATTAAAAAAAAAACTTGAAAACTTTATGGGATCATWTTCTTTTATTCAAAACTTATCTATATCTACTAGGCTGACGCTATAATAGAGGGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34893</snp_id>
        <super_contig>c009500791.Contig1</super_contig>
        <contig_pos>184217</contig_pos>
        <strand></strand>
        <context>tgggatcatw[T/C]tcttttattc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTTTTTTTGCGAAATTAAAAAAAAAACTTGAAAACTTTATGGGATCATT</left_flank>
        <right_flank>TCTTTTATTCAAAACTTATCTATATCTACTAGGCTGACGCTATAATAGAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGAATTTTTTGAAATTTGTGAAACTATATCGAGAGGTTGAAAAATCGAAATTTTGAAGTCTCTGACTATTTATTGAAGCATATGACTATAATTTCCTAAAAACCGTATTCCTTACAACAGAACGTCAATCTCATAGAATTTGCATCACAAGATTAATTATTTCTAAAAGATTTTCTATCCGGAAAATACTGATGGTATTTTGCCAAAAAGATTTCCATTTGACAAACTCTGTGTATCTTTTACAGGATGTGAGATACAGTACCGTTCACTAACTAGGGAAGGTTGTAATTGGGGGGTGGAACTTCGGTATGAGACCTATATCATTCGAAAGCTGAGAATGAGACATTTTCAAATATGTGTTCTGATTTTGCTGAGGAGCTACCAGTTTTGAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAAATGGGGACCCCATGGTGATTTTTTTTGCGAAATTAAAAAAAAAACTTGAAAACTTTATGGGATCATTTTCTTTTATTCAAAACTTATCTATATCTACTAGGCTGACGCTATAATAGAGGGAATTCGGTGAATTTCACTGAACCAGATATTGAGAGAATGTTTAATAATAATAATCGGTTCCAAACAAATTTCAGGTTCAAAATTTACCAAAAATCTATGTTTTCTGGATCTTCTATTTTTAAAAACACGATTTTCTAATGCTTGTAAATGTTTGAAGTTCAAAAAATATGAAAATATAAAATTTGTACTATTAGGTTGGAAGGAAAGTAACTGTCCATTTTTTAAATAACACAAAAACAAGAATTATCCAAGATTGGAGTATGCATCGTCGTGGTCCAGGACATGCTGGCAACAGTCACGAAACTCGTGGATACCATACCTCCTAAAGCCTCCTAAATCTCCTAAACATCAATAATAAAAGGACCAAATCAGGAGTTTGAGAGAGGCGTAAAGAAAAACCGACCAGCTGAAGCGGCTCATACCTTACTTGACTTTCCGTGGAACATAC</canonical>
            <polymorphic>TTGGAATTTTTTGAAATTTGTGAAACTATATCGAGAGGTTGAAAAATCGAAATTTTGAAGTCTCTGACTATTTATTGAAGCATATGACTATAATTTCCTAAAAACCGTATTCCTTACAACAGAACGTCAATCTCATAGAATTTGCATCACAAGATTAATTATTTCTAAAAGATTTTCTATCCGGAAAATACTGATGGTATTTTGCCAAAAAGATTTCCATTTGACAAACTCTGTGTATCTTTTACAGGATGTGAGATACAGTACCGTTCACTAACTAGGGAAGGTTGTAATTGGGGGGTGGAACTTCGGTATGAGACCTATATCATTCGAAAGCTGAGAATGAGACATTTTCAAATATGTGTTCTGATTTTGCTGAGGAGCTACCAGTTTTGAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAAATGGGGACCCCATGGTGATTTTTTTTGCGAAATTAAAAAAAAAACTTGAAAACTTTATGGGATCATTYTCTTTTATTCAAAACTTATCTATATCTACTAGGCTGACGCTATAATAGAGGGAATTCGGTGAATTTCACTGAACCAGATATTGAGAGAATGTTTAATAATAATAATCGGTTCCAAACAAATTTCAGGTTCAAAATTTACCAAAAATCTATGTTTTCTGGATCTTCTATTTTTAAAAACACGATTTTCTAATGCTTGTAAATGTTTGAAGTTCAAAAAATATGAAAATATAAAATTTGTACTATTAGGTTGGAAGGAAAGTAACTGTCCATTTTTTAAATAACACAAAAACAAGAATTATCCAAGATTGGAGTATGCATCGTCGTGGTCCAGGACATGCTGGCAACAGTCACGAAACTCGTGGATACCATACCTCCTAAAGCCTCCTAAATCTCCTAAACATCAATAATAAAAGGACCAAATCAGGAGTTTGAGAGAGGCGTAAAGAAAAACCGACCAGCTGAAGCGGCTCATACCTTACTTGACTTTCCGTGGAACATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTACAGGATGTGAGATACAG</pcr_primer_p1>
		<pcr_primer_p2>AATTCCCTCTATTATAGCGTCAG</pcr_primer_p2>
		<pcr_amplicon_size>319</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTACAGGATGTGAGATACAGTACCGTTCACTAACTAGGGAAGGTTGTAATTGGGGGGTGGAACTTCGGTATGAGACCTATATCATTCGAAAGCTGAGAATGAGACATTTTCAAATATGTGTTCTGATTTTGCTGAGGAGCTACCAGTTTTGAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAAATGGGGACCCCATGGTGATTTTTTTTGCGAAATTAAAAAAAAAACTTGAAAACTTTATGGGATCATTTTCTTTTATTCAAAACTTATCTATATCTACTAGGCTGACGCTATAATAGAGGGAATT</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTACAGGATGTGAGATACAGTACCGTTCACTAACTAGGGAAGGTTGTAATTGGGGGGTGGAACTTCGGTATGAGACCTATATCATTCGAAAGCTGAGAATGAGACATTTTCAAATATGTGTTCTGATTTTGCTGAGGAGCTACCAGTTTTGAAAAAATCGGGTTCAAAATCTGAGAAATTGCAAATGCAAAATGGGGACCCCATGGTGATTTTTTTTGCGAAATTAAAAAAAAAACTTGAAAACTTTATGGGATCATTYTCTTTTATTCAAAACTTATCTATATCTACTAGGCTGACGCTATAATAGAGGGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34894</snp_id>
        <super_contig>c009500792.Contig1</super_contig>
        <contig_pos>7229</contig_pos>
        <strand>+</strand>
        <context>ATTTTCCAAC[A/G]AAAAAAAGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCCTAAATTTGATTCAAGTACCATTTTTTAGAATCCAAGATTTTCCAAC</left_flank>
        <right_flank>AAAAAAAGTCTTATACCTGCTCAACGAACAACGAAAAAGGAGACGAACTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGGTCCCTTTATTCGTTCCAGGGACCCCATAATTACATATACCCTTTTTCCCCTTTTGGCCCCAAACCTCAATTTTTATGTCTCCCACACAACAAAACATATTTTTCTCAAAATGTTTTTTTTTCTCACGGGATTTTCCTCCAAAATCTGCTGAATCTTGTCGTACTCGTGCCGNNNNNNNNNNCCCCCCCCCCCCCCCCCCGAGAGGAGTTTGGAAAAATAGAAGGGCCCTGTAATAGAAGGGCCCTCGTAATAGAAGGGCCCCATGTAAAGAAGGACCCCCTTCAAAATAGTCATGAAATAAAAAAATTTCCGCACTTTTTTAATGAAAAATGTTCCGGGAATTCTAAAATTTAATAGAAATCTGTTGGAAAACAACTTTTTTGCTCAAAAACTTAATTAATTTTGGTGAAATTGACAGATTTTCATGACTTTTGAACGAAAATTCGCCTAAATTTGATTCAAGTACCATTTTTTAGAATCCAAGATTTTCCAACAAAAAAAAGTCTTATACCTGCTCAACGAACAACGAAAAAGGAGACGAACTCTTTTTTTTTCATTGCTCAGCTTTGTGGAAAAAAGGGGAAATGGTGTCGTACTATTGTTCAAAGAGTACACACACACACATCATGAAAAGGAAGGTCCTTCTCGAAGAAAAGGGGAACAGAATGGAGATGAAAAAGAGGAGAAATTTTGCTGGTTTCCATGGAGACCAGCAAAATAAGAGGACGAGGAGGCAAAAACCAAAGTTTTTTCGTTTCCCATGAGTACTAGGGAGACTCTCCCTGGCGTGTGTAATGGATTGCGTGTCAAATTATTAATGTGTATATCTAGAAGGGGGGGGGGGTGAATCTCAAACTTTATAGGATCTTTATTACTGGTACTCTTTTTTTGACTTGAATGAATTTTTAAACGATTTTTCTGAAAATTAGAAATGATTTTCTAGATCTGGGTCTATTCTATTTTTTATATTTATTTTGNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>TATGGTCCCTTTATTCGTTCCAGGGACCCCATAATTACATATACCCTTTTTCCCCTTTTGGCCCCAAACCTCAATTTTTATGTCTCCCACACAACAAAACATATTTTTCTCAAAATGTTTTTTTTTCTCACGGGATTTTCCTCCAAAATCTGCTGAATCTTGTCGTACTCGTGCCGNNNNNNNNNNCCCCCCCCCCCCCCCCCCGAGAGGAGTTTGGAAAAATAGAAGGGCCCTGTAATAGAAGGGCCCTCGTAATAGAAGGGCCCCATGTAAAGAAGGACCCCCTTCAAAATAGTCATGAAATAAAAAAATTTCCGCACTTTTTTAATGAAAAATGTTCCGGGAATTCTAAAATTTAATAGAAATCTGTTGGAAAACAACTTTTTTGCTCAAAAACTTAATTAATTTTGGTGAAATTGACAGATTTTCATGACTTTTGAACGAAAATTCGCCTAAATTTGATTCAAGTACCATTTTTTAGAATCCAAGATTTTCCAACRAAAAAAAGTCTTATACCTGCTCAACGAACAACGAAAAAGGAGACGAACTCTTTTTTTTTCATTGCTCAGCTTTGTGGAAAAAAGGGGAAATGGTGTCGTACTATTGTTCAAAGAGTACACACACACACATCATGAAAAGGAAGGTCCTTCTCGAAGAAAAGGGGAACAGAATGGAGATGAAAAAGAGGAGAAATTTTGCTGGTTTCCATGGAGACCAGCAAAATAAGAGGACGAGGAGGCAAAAACCAAAGTTTTTTCGTTTCCCATGAGTACTAGGGAGACTCTCCCTGGCGTGTGTAATGGATTGCGTGTCAAATTATTAATGTGTATATCTAGAAGGGGGGGGGGGTGAATCTCAAACTTTATAGGATCTTTATTACTGGTACTCTTTTTTTGACTTGAATGAATTTTTAAACGATTTTTCTGAAAATTAGAAATGATTTTCTAGATCTGGGTCTATTCTATTTTTTATATTTATTTTGNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAAATCTGTTGGAAAACAACT</pcr_primer_p1>
		<pcr_primer_p2>GAACAATAGTACGACACCATTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGAAATCTGTTGGAAAACAACTTTTTTGCTCAAAAACTTAATTAATTTTGGTGAAATTGACAGATTTTCATGACTTTTGAACGAAAATTCGCCTAAATTTGATTCAAGTACCATTTTTTAGAATCCAAGATTTTCCAACAAAAAAAAGTCTTATACCTGCTCAACGAACAACGAAAAAGGAGACGAACTCTTTTTTTTTCATTGCTCAGCTTTGTGGAAAAAAGGGGAAATGGTGTCGTACTATTGTTC</canonical_amplicon>
		<polymorphic_amplicon>TAGAAATCTGTTGGAAAACAACTTTTTTGCTCAAAAACTTAATTAATTTTGGTGAAATTGACAGATTTTCATGACTTTTGAACGAAAATTCGCCTAAATTTGATTCAAGTACCATTTTTTAGAATCCAAGATTTTCCAACRAAAAAAAGTCTTATACCTGCTCAACGAACAACGAAAAAGGAGACGAACTCTTTTTTTTTCATTGCTCAGCTTTGTGGAAAAAAGGGGAAATGGTGTCGTACTATTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34895</snp_id>
        <super_contig>c009500792.Contig1</super_contig>
        <contig_pos>7280</contig_pos>
        <strand>+</strand>
        <context>AGACGAACTC[A/G]TTTTTTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAAAGTCTTATACCTGCTCAACGAACAACGAAAAAGGAGACGAACTC</left_flank>
        <right_flank>TTTTTTTTCATTGCTCAGCTTTGTGGAAAAAAGGGGAAATGGTGTCGTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCCTTTTGGCCCCAAACCTCAATTTTTATGTCTCCCACACAACAAAACATATTTTTCTCAAAATGTTTTTTTTTCTCACGGGATTTTCCTCCAAAATCTGCTGAATCTTGTCGTACTCGTGCCGNNNNNNNNNNCCCCCCCCCCCCCCCCCCGAGAGGAGTTTGGAAAAATAGAAGGGCCCTGTAATAGAAGGGCCCTCGTAATAGAAGGGCCCCATGTAAAGAAGGACCCCCTTCAAAATAGTCATGAAATAAAAAAATTTCCGCACTTTTTTAATGAAAAATGTTCCGGGAATTCTAAAATTTAATAGAAATCTGTTGGAAAACAACTTTTTTGCTCAAAAACTTAATTAATTTTGGTGAAATTGACAGATTTTCATGACTTTTGAACGAAAATTCGCCTAAATTTGATTCAAGTACCATTTTTTAGAATCCAAGATTTTCCAACAAAAAAAAGTCTTATACCTGCTCAACGAACAACGAAAAAGGAGACGAACTCTTTTTTTTTCATTGCTCAGCTTTGTGGAAAAAAGGGGAAATGGTGTCGTACTATTGTTCAAAGAGTACACACACACACATCATGAAAAGGAAGGTCCTTCTCGAAGAAAAGGGGAACAGAATGGAGATGAAAAAGAGGAGAAATTTTGCTGGTTTCCATGGAGACCAGCAAAATAAGAGGACGAGGAGGCAAAAACCAAAGTTTTTTCGTTTCCCATGAGTACTAGGGAGACTCTCCCTGGCGTGTGTAATGGATTGCGTGTCAAATTATTAATGTGTATATCTAGAAGGGGGGGGGGGTGAATCTCAAACTTTATAGGATCTTTATTACTGGTACTCTTTTTTTGACTTGAATGAATTTTTAAACGATTTTTCTGAAAATTAGAAATGATTTTCTAGATCTGGGTCTATTCTATTTTTTATATTTATTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>CCCCTTTTGGCCCCAAACCTCAATTTTTATGTCTCCCACACAACAAAACATATTTTTCTCAAAATGTTTTTTTTTCTCACGGGATTTTCCTCCAAAATCTGCTGAATCTTGTCGTACTCGTGCCGNNNNNNNNNNCCCCCCCCCCCCCCCCCCGAGAGGAGTTTGGAAAAATAGAAGGGCCCTGTAATAGAAGGGCCCTCGTAATAGAAGGGCCCCATGTAAAGAAGGACCCCCTTCAAAATAGTCATGAAATAAAAAAATTTCCGCACTTTTTTAATGAAAAATGTTCCGGGAATTCTAAAATTTAATAGAAATCTGTTGGAAAACAACTTTTTTGCTCAAAAACTTAATTAATTTTGGTGAAATTGACAGATTTTCATGACTTTTGAACGAAAATTCGCCTAAATTTGATTCAAGTACCATTTTTTAGAATCCAAGATTTTCCAACAAAAAAAAGTCTTATACCTGCTCAACGAACAACGAAAAAGGAGACGAACTCRTTTTTTTTCATTGCTCAGCTTTGTGGAAAAAAGGGGAAATGGTGTCGTACTATTGTTCAAAGAGTACACACACACACATCATGAAAAGGAAGGTCCTTCTCGAAGAAAAGGGGAACAGAATGGAGATGAAAAAGAGGAGAAATTTTGCTGGTTTCCATGGAGACCAGCAAAATAAGAGGACGAGGAGGCAAAAACCAAAGTTTTTTCGTTTCCCATGAGTACTAGGGAGACTCTCCCTGGCGTGTGTAATGGATTGCGTGTCAAATTATTAATGTGTATATCTAGAAGGGGGGGGGGGTGAATCTCAAACTTTATAGGATCTTTATTACTGGTACTCTTTTTTTGACTTGAATGAATTTTTAAACGATTTTTCTGAAAATTAGAAATGATTTTCTAGATCTGGGTCTATTCTATTTTTTATATTTATTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAAATCTGTTGGAAAACAACT</pcr_primer_p1>
		<pcr_primer_p2>GAACAATAGTACGACACCATTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGAAATCTGTTGGAAAACAACTTTTTTGCTCAAAAACTTAATTAATTTTGGTGAAATTGACAGATTTTCATGACTTTTGAACGAAAATTCGCCTAAATTTGATTCAAGTACCATTTTTTAGAATCCAAGATTTTCCAACAAAAAAAAGTCTTATACCTGCTCAACGAACAACGAAAAAGGAGACGAACTCTTTTTTTTTCATTGCTCAGCTTTGTGGAAAAAAGGGGAAATGGTGTCGTACTATTGTTC</canonical_amplicon>
		<polymorphic_amplicon>TAGAAATCTGTTGGAAAACAACTTTTTTGCTCAAAAACTTAATTAATTTTGGTGAAATTGACAGATTTTCATGACTTTTGAACGAAAATTCGCCTAAATTTGATTCAAGTACCATTTTTTAGAATCCAAGATTTTCCAACAAAAAAAAGTCTTATACCTGCTCAACGAACAACGAAAAAGGAGACGAACTCRTTTTTTTTCATTGCTCAGCTTTGTGGAAAAAAGGGGAAATGGTGTCGTACTATTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34896</snp_id>
        <super_contig>c009500792.Contig1</super_contig>
        <contig_pos>7343</contig_pos>
        <strand>+</strand>
        <context>TTGTTCAAAG[A/T]GTACACACAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTCAGCTTTGTGGAAAAAAGGGGAAATGGTGTCGTACTATTGTTCAAAG</left_flank>
        <right_flank>GTACACACACACACATCATGAAAAGGAAGGTCCTTCTCGAAGAAAAGGGG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTTTTTTTTTCTCACGGGATTTTCCTCCAAAATCTGCTGAATCTTGTCGTACTCGTGCCGNNNNNNNNNNCCCCCCCCCCCCCCCCCCGAGAGGAGTTTGGAAAAATAGAAGGGCCCTGTAATAGAAGGGCCCTCGTAATAGAAGGGCCCCATGTAAAGAAGGACCCCCTTCAAAATAGTCATGAAATAAAAAAATTTCCGCACTTTTTTAATGAAAAATGTTCCGGGAATTCTAAAATTTAATAGAAATCTGTTGGAAAACAACTTTTTTGCTCAAAAACTTAATTAATTTTGGTGAAATTGACAGATTTTCATGACTTTTGAACGAAAATTCGCCTAAATTTGATTCAAGTACCATTTTTTAGAATCCAAGATTTTCCAACAAAAAAAAGTCTTATACCTGCTCAACGAACAACGAAAAAGGAGACGAACTCTTTTTTTTTCATTGCTCAGCTTTGTGGAAAAAAGGGGAAATGGTGTCGTACTATTGTTCAAAGAGTACACACACACACATCATGAAAAGGAAGGTCCTTCTCGAAGAAAAGGGGAACAGAATGGAGATGAAAAAGAGGAGAAATTTTGCTGGTTTCCATGGAGACCAGCAAAATAAGAGGACGAGGAGGCAAAAACCAAAGTTTTTTCGTTTCCCATGAGTACTAGGGAGACTCTCCCTGGCGTGTGTAATGGATTGCGTGTCAAATTATTAATGTGTATATCTAGAAGGGGGGGGGGGTGAATCTCAAACTTTATAGGATCTTTATTACTGGTACTCTTTTTTTGACTTGAATGAATTTTTAAACGATTTTTCTGAAAATTAGAAATGATTTTCTAGATCTGGGTCTATTCTATTTTTTATATTTATTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>ATGTTTTTTTTTCTCACGGGATTTTCCTCCAAAATCTGCTGAATCTTGTCGTACTCGTGCCGNNNNNNNNNNCCCCCCCCCCCCCCCCCCGAGAGGAGTTTGGAAAAATAGAAGGGCCCTGTAATAGAAGGGCCCTCGTAATAGAAGGGCCCCATGTAAAGAAGGACCCCCTTCAAAATAGTCATGAAATAAAAAAATTTCCGCACTTTTTTAATGAAAAATGTTCCGGGAATTCTAAAATTTAATAGAAATCTGTTGGAAAACAACTTTTTTGCTCAAAAACTTAATTAATTTTGGTGAAATTGACAGATTTTCATGACTTTTGAACGAAAATTCGCCTAAATTTGATTCAAGTACCATTTTTTAGAATCCAAGATTTTCCAACAAAAAAAAGTCTTATACCTGCTCAACGAACAACGAAAAAGGAGACGAACTCTTTTTTTTTCATTGCTCAGCTTTGTGGAAAAAAGGGGAAATGGTGTCGTACTATTGTTCAAAGWGTACACACACACACATCATGAAAAGGAAGGTCCTTCTCGAAGAAAAGGGGAACAGAATGGAGATGAAAAAGAGGAGAAATTTTGCTGGTTTCCATGGAGACCAGCAAAATAAGAGGACGAGGAGGCAAAAACCAAAGTTTTTTCGTTTCCCATGAGTACTAGGGAGACTCTCCCTGGCGTGTGTAATGGATTGCGTGTCAAATTATTAATGTGTATATCTAGAAGGGGGGGGGGGTGAATCTCAAACTTTATAGGATCTTTATTACTGGTACTCTTTTTTTGACTTGAATGAATTTTTAAACGATTTTTCTGAAAATTAGAAATGATTTTCTAGATCTGGGTCTATTCTATTTTTTATATTTATTTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 345 155</canonical_bands>
                <polymorphic_bands>655 345</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTAAATTTGATTCAAGTACCAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTCTCCTCTTTTTCATCTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CCTAAATTTGATTCAAGTACCATTTTTTAGAATCCAAGATTTTCCAACAAAAAAAAGTCTTATACCTGCTCAACGAACAACGAAAAAGGAGACGAACTCTTTTTTTTTCATTGCTCAGCTTTGTGGAAAAAAGGGGAAATGGTGTCGTACTATTGTTCAAAGAGTACACACACACACATCATGAAAAGGAAGGTCCTTCTCGAAGAAAAGGGGAACAGAATGGAGATGAAAAAGAGGAGAAATTT</canonical_amplicon>
		<polymorphic_amplicon>CCTAAATTTGATTCAAGTACCATTTTTTAGAATCCAAGATTTTCCAACAAAAAAAAGTCTTATACCTGCTCAACGAACAACGAAAAAGGAGACGAACTCTTTTTTTTTCATTGCTCAGCTTTGTGGAAAAAAGGGGAAATGGTGTCGTACTATTGTTCAAAGWGTACACACACACACATCATGAAAAGGAAGGTCCTTCTCGAAGAAAAGGGGAACAGAATGGAGATGAAAAAGAGGAGAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34897</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>4790</contig_pos>
        <strand>+</strand>
        <context>TCCAATTTTC[A/T]CGAATTGAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCAAGTTGCTCATCGCCATCGACATTTTCAGCTCGTTGGCTCCAATTTTC</left_flank>
        <right_flank>CGAATTGAAGATTCCGCCACGACGACGTCATCTGATGACATCTTCTGATA</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGCGGGCATACGGTAGACGATGATAGGTAAGCAAACACCGCGGCGGCAAAGTGCACAGAATGAAAGGTTGTGTGATTTTTTTCAGGTTTTTCAAACGGATTTTGAGGGGAATTAGCTGAAAAATAGCAAAAACACAGGAGAGGACACATTAGAGAATTTCTTGCAATTAGAAACATTCCAGAATTTTTTGATAATCATACCTAACAACACATCAGCACATATTCCTTCTAAATCCCTTTTTCTCGCATTCGTAATATCTTTCTCTGCCACAATGCAAAGCGTCGGAAGGACAATTTGAAAGGTATTCTGGTCAACGAGTCGCATGTGTCTGAAATTCAGTCATTCAGAATATTAAGAAAAAAAAAATCATTAAGTACGCCAGATAATCCGCAAGTTGCTCATCGCCATCGACATTTTCAGCTCGTTGGCTCCAATTTTCTCGAATTGAAGATTCCGCCACGACGACGTCATCTGATGACATCTTCTGATAATATGATCGGTTTTATAAAAATTTAGCTGTATTATGCTTGTCTGAGAAAAAAAAGGTTGAGACGCAGAGAAAAAGTGTCTGCGTCTCCACCGTTTGTGTGCTATTTAGGCTCTCCGCTTCGATATCTCTACCGTATTCAGACTGCAAAAAATACTCTTAACGTTTTTTTTCTCAGACAAGCATAATAAAAACGATATTCAATTGGTTTCCGTAGATTCCAAAAAAAGTAGAGAAAAAAGAGATAATGGGTGAAATCCTAATCACTAAAAACAACTTTATATTCTATCAATAAAAAAACAAAACAAAACGAAAAGTTTGCAGAAAAAGGAAGAAAAATTAGGCAAAAGAATGAGGTCTGATTGGTTTGAGCGGATCGAACAACTTTGGATCTCTAGCGTATTTTGGATCTTTCACAAAGATTGGCATGAATCCGGCACGTCGAGATTTCTG</canonical>
            <polymorphic>ATTGGGGTCCGATTTTTAGCTGCAAATTTATGGAATTTTGTAAAATTAGAAGAAATGAAGGGCGGGCATACGGTAGACGATGATAGGTAAGCAAACACCGCGGCGGCAAAGTGCACAGAATGAAAGGTTGTGTGATTTTTTTCAGGTTTTTCAAACGGATTTTGAGGGGAATTAGCTGAAAAATAGCAAAAACACAGGAGAGGACACATTAGAGAATTTCTTGCAATTAGAAACATTCCAGAATTTTTTGATAATCATACCTAACAACACATCAGCACATATTCCTTCTAAATCCCTTTTTCTCGCATTCGTAATATCTTTCTCTGCCACAATGCAAAGCGTCGGAAGGACAATTTGAAAGGTATTCTGGTCAACGAGTCGCATGTGTCTGAAATTCAGTCATTCAGAATATTAAGAAAAAAAAAATCATTAAGTACGCCAGATAATCCGCAAGTTGCTCATCGCCATCGACATTTTCAGCTCGTTGGCTCCAATTTTCWCGAATTGAAGATTCCGCCACGACGACGTCATCTGATGACATCTTCTGATAATATGATCGGTTTTATAAAAATTTAGCTGTATTATGCTTGTCTGAGAAAAAAAAGGTTGAGACGCAGAGAAAAAGTGTCTGCGTCTCCACCGTTTGTGTGCTATTTAGGCTCTCCGCTTCGATATCTCTACCGTATTCAGACTGCAAAAAATACTCTTAACGTTTTTTTTCTCAGACAAGCATAATAAAAACGATATTCAATTGGTTTCCGTAGATTCCAAAAAAAGTAGAGAAAAAAGAGATAATGGGTGAAATCCTAATCACTAAAAACAACTTTATATTCTATCAATAAAAAAACAAAACAAAACGAAAAGTTTGCAGAAAAAGGAAGAAAAATTAGGCAAAAGAATGAGGTCTGATTGGTTTGAGCGGATCGAACAACTTTGGATCTCTAGCGTATTTTGGATCTTTCACAAAGATTGGCATGAATCCGGCACGTCGAGATTTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>469 255 169 65 32 10</canonical_bands>
                <polymorphic_bands>469 255 201 65 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGACAATTTGAAAGGTATTCT</pcr_primer_p1>
		<pcr_primer_p2>AAAACCGATCATATTATCAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>219</pcr_amplicon_size>
		<canonical_amplicon>AAGGACAATTTGAAAGGTATTCTGGTCAACGAGTCGCATGTGTCTGAAATTCAGTCATTCAGAATATTAAGAAAAAAAAAATCATTAAGTACGCCAGATAATCCGCAAGTTGCTCATCGCCATCGACATTTTCAGCTCGTTGGCTCCAATTTTCTCGAATTGAAGATTCCGCCACGACGACGTCATCTGATGACATCTTCTGATAATATGATCGGTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAGGACAATTTGAAAGGTATTCTGGTCAACGAGTCGCATGTGTCTGAAATTCAGTCATTCAGAATATTAAGAAAAAAAAAATCATTAAGTACGCCAGATAATCCGCAAGTTGCTCATCGCCATCGACATTTTCAGCTCGTTGGCTCCAATTTTCWCGAATTGAAGATTCCGCCACGACGACGTCATCTGATGACATCTTCTGATAATATGATCGGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34898</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>6784</contig_pos>
        <strand>+</strand>
        <context>TCGGTTTTTC[A/G]AACAACGTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATCATTCAAGCCATGGACACTGATCACCATCAAGGCCTTCGGTTTTTC</left_flank>
        <right_flank>AACAACGTACTAGACGATAGCTTTTGACCAACTGCAAAAAATGCAATGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATTCGAATTTTCTCGGCCTCTTTCACAGGACTTTCGTGTGTATAAATCTCTGCAACTACGTTTCCATTTGTGACATTTTTGATGGCTTCTTGCAGCGAGTCGATGCCTCGCTTGATATTTTCGGCGAGCTGATTCTTTTCCATATCAGTCCGTGCGTTGGAAACGTCGAGATGAATGCGGTAATAGTCGATGACGTTGGCTTGTTTTCGATCTTTTACCCGAATAATTGCCGTCAGTTTATCCATGTTTTGAATGTCTTGGTAATTTGGTTCGATCTCGATTTCGTCATCAGAAGGGGACTCTCTCTTGAAATTAGGTGAACCGAAAATGCCCGAGGAGTTCACTTCAGCATGATACATGCTATCCCCGAAGAGTTTTTCCAAGCTATCCTTAATTTCCAGCAAATCGAATTTGTCGGTAAAGTTGAAGGTACGACCATCATAATTGAAATCATTCAAGCCATGGACACTGATCACCATCAAGGCCTTCGGTTTTTCAAACAACGTACTAGACGATAGCTTTTGACCAACTGCAAAAAATGCAATGCAATTCCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAAAATTCAACAAAGACTTGGAATCGAATTCTGAATTTTCTAAGTCAAGTGGCGGTGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGAAAATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAGAAATTGCGGCGAATTAGAAATTTTTTCCCGACAGGCAGATGGAAGAGGTTTCGCAGCGCAAACGCTAGGTCGCCGAGTAAGTAAAAGCGCGCGCGTTTGAAAATCAGTTTCTAAATAAAAGAAGAAAGGAAGAAGGAAATCACGAAATAGGAACAAATAAGCTCAAATGTTAGAAAATTTATACTAAGAAACAC</canonical>
            <polymorphic>TGATTCGAATTTTCTCGGCCTCTTTCACAGGACTTTCGTGTGTATAAATCTCTGCAACTACGTTTCCATTTGTGACATTTTTGATGGCTTCTTGCAGCGAGTCGATGCCTCGCTTGATATTTTCGGCGAGCTGATTCTTTTCCATATCAGTCCGTGCGTTGGAAACGTCGAGATGAATGCGGTAATAGTCGATGACGTTGGCTTGTTTTCGATCTTTTACCCGAATAATTGCCGTCAGTTTATCCATGTTTTGAATGTCTTGGTAATTTGGTTCGATCTCGATTTCGTCATCAGAAGGGGACTCTCTCTTGAAATTAGGTGAACCGAAAATGCCCGAGGAGTTCACTTCAGCATGATACATGCTATCCCCGAAGAGTTTTTCCAAGCTATCCTTAATTTCCAGCAAATCGAATTTGTCGGTAAAGTTGAAGGTACGACCATCATAATTGAAATCATTCAAGCCATGGACACTGATCACCATCAAGGCCTTCGGTTTTTCRAACAACGTACTAGACGATAGCTTTTGACCAACTGCAAAAAATGCAATGCAATTCCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAAAATTCAACAAAGACTTGGAATCGAATTCTGAATTTTCTAAGTCAAGTGGCGGTGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGAAAATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAGAAATTGCGGCGAATTAGAAATTTTTTCCCGACAGGCAGATGGAAGAGGTTTCGCAGCGCAAACGCTAGGTCGCCGAGTAAGTAAAAGCGCGCGCGTTTGAAAATCAGTTTCTAAATAAAAGAAGAAAGGAAGAAGGAAATCACGAAATAGGAACAAATAAGCTCAAATGTTAGAAAATTTATACTAAGAAACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGTTTTTCCAAGCTATCCTTA</pcr_primer_p1>
		<pcr_primer_p2>TTAACAAGCAAGTATTTGGAATC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAGTTTTTCCAAGCTATCCTTAATTTCCAGCAAATCGAATTTGTCGGTAAAGTTGAAGGTACGACCATCATAATTGAAATCATTCAAGCCATGGACACTGATCACCATCAAGGCCTTCGGTTTTTCAAACAACGTACTAGACGATAGCTTTTGACCAACTGCAAAAAATGCAATGCAATTCCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAA</canonical_amplicon>
		<polymorphic_amplicon>AGAGTTTTTCCAAGCTATCCTTAATTTCCAGCAAATCGAATTTGTCGGTAAAGTTGAAGGTACGACCATCATAATTGAAATCATTCAAGCCATGGACACTGATCACCATCAAGGCCTTCGGTTTTTCRAACAACGTACTAGACGATAGCTTTTGACCAACTGCAAAAAATGCAATGCAATTCCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34899</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>6802</contig_pos>
        <strand>+</strand>
        <context>TACTAGACGA[A/T]AGCTTTTGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACACTGATCACCATCAAGGCCTTCGGTTTTTCAAACAACGTACTAGACGA</left_flank>
        <right_flank>AGCTTTTGACCAACTGCAAAAAATGCAATGCAATTCCGATGATTTTATGA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCTTTCACAGGACTTTCGTGTGTATAAATCTCTGCAACTACGTTTCCATTTGTGACATTTTTGATGGCTTCTTGCAGCGAGTCGATGCCTCGCTTGATATTTTCGGCGAGCTGATTCTTTTCCATATCAGTCCGTGCGTTGGAAACGTCGAGATGAATGCGGTAATAGTCGATGACGTTGGCTTGTTTTCGATCTTTTACCCGAATAATTGCCGTCAGTTTATCCATGTTTTGAATGTCTTGGTAATTTGGTTCGATCTCGATTTCGTCATCAGAAGGGGACTCTCTCTTGAAATTAGGTGAACCGAAAATGCCCGAGGAGTTCACTTCAGCATGATACATGCTATCCCCGAAGAGTTTTTCCAAGCTATCCTTAATTTCCAGCAAATCGAATTTGTCGGTAAAGTTGAAGGTACGACCATCATAATTGAAATCATTCAAGCCATGGACACTGATCACCATCAAGGCCTTCGGTTTTTCAAACAACGTACTAGACGATAGCTTTTGACCAACTGCAAAAAATGCAATGCAATTCCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAAAATTCAACAAAGACTTGGAATCGAATTCTGAATTTTCTAAGTCAAGTGGCGGTGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGAAAATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAGAAATTGCGGCGAATTAGAAATTTTTTCCCGACAGGCAGATGGAAGAGGTTTCGCAGCGCAAACGCTAGGTCGCCGAGTAAGTAAAAGCGCGCGCGTTTGAAAATCAGTTTCTAAATAAAAGAAGAAAGGAAGAAGGAAATCACGAAATAGGAACAAATAAGCTCAAATGTTAGAAAATTTATACTAAGAAACACAAATATAATTAAGACTGT</canonical>
            <polymorphic>CCTCTTTCACAGGACTTTCGTGTGTATAAATCTCTGCAACTACGTTTCCATTTGTGACATTTTTGATGGCTTCTTGCAGCGAGTCGATGCCTCGCTTGATATTTTCGGCGAGCTGATTCTTTTCCATATCAGTCCGTGCGTTGGAAACGTCGAGATGAATGCGGTAATAGTCGATGACGTTGGCTTGTTTTCGATCTTTTACCCGAATAATTGCCGTCAGTTTATCCATGTTTTGAATGTCTTGGTAATTTGGTTCGATCTCGATTTCGTCATCAGAAGGGGACTCTCTCTTGAAATTAGGTGAACCGAAAATGCCCGAGGAGTTCACTTCAGCATGATACATGCTATCCCCGAAGAGTTTTTCCAAGCTATCCTTAATTTCCAGCAAATCGAATTTGTCGGTAAAGTTGAAGGTACGACCATCATAATTGAAATCATTCAAGCCATGGACACTGATCACCATCAAGGCCTTCGGTTTTTCAAACAACGTACTAGACGAWAGCTTTTGACCAACTGCAAAAAATGCAATGCAATTCCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAAAATTCAACAAAGACTTGGAATCGAATTCTGAATTTTCTAAGTCAAGTGGCGGTGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGAAAATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAGAAATTGCGGCGAATTAGAAATTTTTTCCCGACAGGCAGATGGAAGAGGTTTCGCAGCGCAAACGCTAGGTCGCCGAGTAAGTAAAAGCGCGCGCGTTTGAAAATCAGTTTCTAAATAAAAGAAGAAAGGAAGAAGGAAATCACGAAATAGGAACAAATAAGCTCAAATGTTAGAAAATTTATACTAAGAAACACAAATATAATTAAGACTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGTTTTTCCAAGCTATCCTTA</pcr_primer_p1>
		<pcr_primer_p2>TTAACAAGCAAGTATTTGGAATC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAGTTTTTCCAAGCTATCCTTAATTTCCAGCAAATCGAATTTGTCGGTAAAGTTGAAGGTACGACCATCATAATTGAAATCATTCAAGCCATGGACACTGATCACCATCAAGGCCTTCGGTTTTTCAAACAACGTACTAGACGATAGCTTTTGACCAACTGCAAAAAATGCAATGCAATTCCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAA</canonical_amplicon>
		<polymorphic_amplicon>AGAGTTTTTCCAAGCTATCCTTAATTTCCAGCAAATCGAATTTGTCGGTAAAGTTGAAGGTACGACCATCATAATTGAAATCATTCAAGCCATGGACACTGATCACCATCAAGGCCTTCGGTTTTTCAAACAACGTACTAGACGAWAGCTTTTGACCAACTGCAAAAAATGCAATGCAATTCCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34900</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>7019</contig_pos>
        <strand>+</strand>
        <context>AATTTTAGAG[A/G]AWATTTTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAG</left_flank>
        <right_flank>AAATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTTTATCCATGTTTTGAATGTCTTGGTAATTTGGTTCGATCTCGATTTCGTCATCAGAAGGGGACTCTCTCTTGAAATTAGGTGAACCGAAAATGCCCGAGGAGTTCACTTCAGCATGATACATGCTATCCCCGAAGAGTTTTTCCAAGCTATCCTTAATTTCCAGCAAATCGAATTTGTCGGTAAAGTTGAAGGTACGACCATCATAATTGAAATCATTCAAGCCATGGACACTGATCACCATCAAGGCCTTCGGTTTTTCAAACAACGTACTAGACGATAGCTTTTGACCAACTGCAAAAAATGCAATGCAATTCCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAAAATTCAACAAAGACTTGGAATCGAATTCTGAATTTTCTAAGTCAAGTGGCGGTGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGAAAATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAGAAATTGCGGCGAATTAGAAATTTTTTCCCGACAGGCAGATGGAAGAGGTTTCGCAGCGCAAACGCTAGGTCGCCGAGTAAGTAAAAGCGCGCGCGTTTGAAAATCAGTTTCTAAATAAAAGAAGAAAGGAAGAAGGAAATCACGAAATAGGAACAAATAAGCTCAAATGTTAGAAAATTTATACTAAGAAACACAAATATAATTAAGACTGTAAATCAAGTTAAAAAGGTTTAAAATGACAAGGAAGTTGGAAAACCAGTATCAAACAATTTCACTTTTTTCTTCTCCTTGACCAAAACGGATGGCGTCTATCCAATATGATAGCGTGATCGCAATTTGTTCCGGTCGAATTTATCAATTCTTCTGATATCTAATTGTATTCAGGAATCGAATGTTTAAACAACAAATGCGGATAATTCAACGGTAAAC</canonical>
            <polymorphic>CAGTTTATCCATGTTTTGAATGTCTTGGTAATTTGGTTCGATCTCGATTTCGTCATCAGAAGGGGACTCTCTCTTGAAATTAGGTGAACCGAAAATGCCCGAGGAGTTCACTTCAGCATGATACATGCTATCCCCGAAGAGTTTTTCCAAGCTATCCTTAATTTCCAGCAAATCGAATTTGTCGGTAAAGTTGAAGGTACGACCATCATAATTGAAATCATTCAAGCCATGGACACTGATCACCATCAAGGCCTTCGGTTTTTCAAACAACGTACTAGACGATAGCTTTTGACCAACTGCAAAAAATGCAATGCAATTCCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAAAATTCAACAAAGACTTGGAATCGAATTCTGAATTTTCTAAGTCAAGTGGCGGTGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGRAAATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAGAAATTGCGGCGAATTAGAAATTTTTTCCCGACAGGCAGATGGAAGAGGTTTCGCAGCGCAAACGCTAGGTCGCCGAGTAAGTAAAAGCGCGCGCGTTTGAAAATCAGTTTCTAAATAAAAGAAGAAAGGAAGAAGGAAATCACGAAATAGGAACAAATAAGCTCAAATGTTAGAAAATTTATACTAAGAAACACAAATATAATTAAGACTGTAAATCAAGTTAAAAAGGTTTAAAATGACAAGGAAGTTGGAAAACCAGTATCAAACAATTTCACTTTTTTCTTCTCCTTGACCAAAACGGATGGCGTCTATCCAATATGATAGCGTGATCGCAATTTGTTCCGGTCGAATTTATCAATTCTTCTGATATCTAATTGTATTCAGGAATCGAATGTTTAAACAACAAATGCGGATAATTCAACGGTAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGATGATTTTATGAAACAAATA</pcr_primer_p1>
		<pcr_primer_p2>CTAGCGTTTATGTTGTTGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAAAATTCAACAAAGACTTGGAATCGAATTCTGAATTTTCTAAGTCAAGTGGCGGTGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGAAAATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAG</canonical_amplicon>
		<polymorphic_amplicon>CCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAAAATTCAACAAAGACTTGGAATCGAATTCTGAATTTTCTAAGTCAAGTGGCGGTGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGRAAATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34901</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>7021</contig_pos>
        <strand>+</strand>
        <context>TTTTAGAGRA[A/T]ATTTTTGAAR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGAA</left_flank>
        <right_flank>ATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTATCCATGTTTTGAATGTCTTGGTAATTTGGTTCGATCTCGATTTCGTCATCAGAAGGGGACTCTCTCTTGAAATTAGGTGAACCGAAAATGCCCGAGGAGTTCACTTCAGCATGATACATGCTATCCCCGAAGAGTTTTTCCAAGCTATCCTTAATTTCCAGCAAATCGAATTTGTCGGTAAAGTTGAAGGTACGACCATCATAATTGAAATCATTCAAGCCATGGACACTGATCACCATCAAGGCCTTCGGTTTTTCAAACAACGTACTAGACGATAGCTTTTGACCAACTGCAAAAAATGCAATGCAATTCCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAAAATTCAACAAAGACTTGGAATCGAATTCTGAATTTTCTAAGTCAAGTGGCGGTGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGAAAATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAGAAATTGCGGCGAATTAGAAATTTTTTCCCGACAGGCAGATGGAAGAGGTTTCGCAGCGCAAACGCTAGGTCGCCGAGTAAGTAAAAGCGCGCGCGTTTGAAAATCAGTTTCTAAATAAAAGAAGAAAGGAAGAAGGAAATCACGAAATAGGAACAAATAAGCTCAAATGTTAGAAAATTTATACTAAGAAACACAAATATAATTAAGACTGTAAATCAAGTTAAAAAGGTTTAAAATGACAAGGAAGTTGGAAAACCAGTATCAAACAATTTCACTTTTTTCTTCTCCTTGACCAAAACGGATGGCGTCTATCCAATATGATAGCGTGATCGCAATTTGTTCCGGTCGAATTTATCAATTCTTCTGATATCTAATTGTATTCAGGAATCGAATGTTTAAACAACAAATGCGGATAATTCAACGGTAAACTT</canonical>
            <polymorphic>GTTTATCCATGTTTTGAATGTCTTGGTAATTTGGTTCGATCTCGATTTCGTCATCAGAAGGGGACTCTCTCTTGAAATTAGGTGAACCGAAAATGCCCGAGGAGTTCACTTCAGCATGATACATGCTATCCCCGAAGAGTTTTTCCAAGCTATCCTTAATTTCCAGCAAATCGAATTTGTCGGTAAAGTTGAAGGTACGACCATCATAATTGAAATCATTCAAGCCATGGACACTGATCACCATCAAGGCCTTCGGTTTTTCAAACAACGTACTAGACGATAGCTTTTGACCAACTGCAAAAAATGCAATGCAATTCCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAAAATTCAACAAAGACTTGGAATCGAATTCTGAATTTTCTAAGTCAAGTGGCGGTGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGAAWATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAGAAATTGCGGCGAATTAGAAATTTTTTCCCGACAGGCAGATGGAAGAGGTTTCGCAGCGCAAACGCTAGGTCGCCGAGTAAGTAAAAGCGCGCGCGTTTGAAAATCAGTTTCTAAATAAAAGAAGAAAGGAAGAAGGAAATCACGAAATAGGAACAAATAAGCTCAAATGTTAGAAAATTTATACTAAGAAACACAAATATAATTAAGACTGTAAATCAAGTTAAAAAGGTTTAAAATGACAAGGAAGTTGGAAAACCAGTATCAAACAATTTCACTTTTTTCTTCTCCTTGACCAAAACGGATGGCGTCTATCCAATATGATAGCGTGATCGCAATTTGTTCCGGTCGAATTTATCAATTCTTCTGATATCTAATTGTATTCAGGAATCGAATGTTTAAACAACAAATGCGGATAATTCAACGGTAAACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>208 173 173 157 83 72 71 23 17 16 7</canonical_bands>
                <polymorphic_bands>208 173 173 157 83 72 71 33 23 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>157 105 82 71 69 67 66 55 48 42 34 27 25 23 17 16 16 16 15 12 10 8 7 7 5</canonical_bands>
                <polymorphic_bands>157 105 82 71 69 67 66 55 48 42 34 28 27 25 23 17 16 16 15 10 8 7 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGATGATTTTATGAAACAAATA</pcr_primer_p1>
		<pcr_primer_p2>CTAGCGTTTATGTTGTTGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAAAATTCAACAAAGACTTGGAATCGAATTCTGAATTTTCTAAGTCAAGTGGCGGTGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGAAAATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAG</canonical_amplicon>
		<polymorphic_amplicon>CCGATGATTTTATGAAACAAATATACAATCGCTACTACTTCCGATTCCAAATACTTGCTTGTTAAAATTCAACAAAGACTTGGAATCGAATTCTGAATTTTCTAAGTCAAGTGGCGGTGCATCGTCCGGTAAGATGATTTGCAGACGTCCAGCGGAACAGGCTGTAAATTTAATTTTAGAGAAWATTTTTGAAGAGAAAAATTTTACCTTGTAAGCCAAAGAGAAACAAGAAAATCAACAACATAAACGCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34902</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>9520</contig_pos>
        <strand>+</strand>
        <context>rrattaatta[A/G]cttacagttg</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGATTTCTGCGAAAGTTTCTGATATTTTTCACAGGAATCGAAATTAATTA</left_flank>
        <right_flank>CTTACAGTTGGCGGGTTGGTTGGGCATTACAGGAAATACGTTAAGTGGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAGATTCAGCTGGTCATAATATGAACTTGGCTCATTACAAATGTATGGAAAAGATGATAAAACTTGCAAACTGGGACTACTTTGTTCTGATGCAGGTAAACCATTTGAATTGGGGGGGGGGGTTCAAAATTGAAAAAAAATGTATTTAAAAAAATTTGGTCGGAGTCCCCTCCTCAAAGGATCTCTGGTCCTACTTTTTCGATTCTCAGAATCACGACGTCATTGGAAAAACGGTCTACGAAATTTCACGGATTTTCGAGATCCTTGATGGAGCCAATGATATTGATATTGATAAGGAATTCGGTAGAGTTGAGGAGAGATTCGAATGGGATCTGAAGAAACTTCGACTGTTTCGAGATGGTTTGTATTTTTTTTTCATATTTTCCAATTACCGTATTCTCTTTAATCGAAGCCCATCCAAACGGTATATTTTGAGCTCAATTATCTCGATTTCTGCGAAAGTTTCTGATATTTTTCACAGGAATCGAAATTAATTAGCTTACAGTTGGCGGGTTGGTTGGGCATTACAGGAAATACGTTAAGTGGTTTTATTGTAGAATCAAGTCTTTCTTCCGGTTTTCTGAACCACACGCTAAGACTATCAAAAGGATCAGTTCAAGGATCTTTATCGCGAGAAGCAGTGGAATGGATGGTGAAGACAGTAAATCCAAAGAAGTATCTGGATCAATGGAATGAGGGGGTGAGTCTACTGACTTTAAAGCGAATTTACCGTATTTCCTGTATTGAGGCTCATTCGAACACTCACCTTTGAGCTCGAATACCTAAATTTCTATAAAAGATAAGAAAACACTGTAAACTGAAAAAATATTCATCATAATTCCACTAATATTTCATCAGTTGACAAATTTTGGACATATCTTATGGGAATCGAGATAATTGAGTTCAAAGTTGACGGATTGTGAGCTTCAATCAGAGAGAATACGGTAGGTGGTTTCAGTCTTACGGCGTCGACGAGCAATGGATTTCAACATTTCAAG</canonical>
            <polymorphic>AATAGATTCAGCTGGTCATAATATGAACTTGGCTCATTACAAATGTATGGAAAAGATGATAAAACTTGCAAACTGGGACTACTTTGTTCTGATGCAGGTAAACCATTTGAATTGGGGGGGGGGGTTCAAAATTGAAAAAAAATGTATTTAAAAAAATTTGGTCGGAGTCCCCTCCTCAAAGGATCTCTGGTCCTACTTTTTCGATTCTCAGAATCACGACGTCATTGGAAAAACGGTCTACGAAATTTCACGGATTTTCGAGATCCTTGATGGAGCCAATGATATTGATATTGATAAGGAATTCGGTAGAGTTGAGGAGAGATTCGAATGGGATCTGAAGAAACTTCGACTGTTTCGAGATGGTTTGTATTTTTTTTTCATATTTTCCAATTACCGTATTCTCTTTAATCGAAGCCCATCCAAACGGTATATTTTGAGCTCAATTATCTCGATTTCTGCGAAAGTTTCTGATATTTTTCACAGGAATCGAAATTAATTARCTTACAGTTGGCGGGTTGGTTGGGCATTACAGGAAATACGTTAAGTGGTTTTATTGTAGAATCAAGTCTTTCTTCCGGTTTTCTGAACCACACGCTAAGACTATCAAAAGGATCAGTTCAAGGATCTTTATCGCGAGAAGCAGTGGAATGGATGGTGAAGACAGTAAATCCAAAGAAGTATCTGGATCAATGGAATGAGGGGGTGAGTCTACTGACTTTAAAGCGAATTTACCGTATTTCCTGTATTGAGGCTCATTCGAACACTCACCTTTGAGCTCGAATACCTAAATTTCTATAAAAGATAAGAAAACACTGTAAACTGAAAAAATATTCATCATAATTCCACTAATATTTCATCAGTTGACAAATTTTGGACATATCTTATGGGAATCGAGATAATTGAGTTCAAAGTTGACGGATTGTGAGCTTCAATCAGAGAGAATACGGTAGGTGGTTTCAGTCTTACGGCGTCGACGAGCAATGGATTTCAACATTTCAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>427 275 151 74 62 11</canonical_bands>
                <polymorphic_bands>427 337 151 74 11</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>251 243 151 139 74 62 24 24 21 11</canonical_bands>
                <polymorphic_bands>313 243 151 139 74 24 24 21 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCCAATTACCGTATTCTCT</pcr_primer_p1>
		<pcr_primer_p2>GATAAAGATCCTTGAACTGATCC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCCAATTACCGTATTCTCTTTAATCGAAGCCCATCCAAACGGTATATTTTGAGCTCAATTATCTCGATTTCTGCGAAAGTTTCTGATATTTTTCACAGGAATCGAAATTAATTAGCTTACAGTTGGCGGGTTGGTTGGGCATTACAGGAAATACGTTAAGTGGTTTTATTGTAGAATCAAGTCTTTCTTCCGGTTTTCTGAACCACACGCTAAGACTATCAAAAGGATCAGTTCAAGGATCTTTATC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCCAATTACCGTATTCTCTTTAATCGAAGCCCATCCAAACGGTATATTTTGAGCTCAATTATCTCGATTTCTGCGAAAGTTTCTGATATTTTTCACAGGAATCGAAATTAATTARCTTACAGTTGGCGGGTTGGTTGGGCATTACAGGAAATACGTTAAGTGGTTTTATTGTAGAATCAAGTCTTTCTTCCGGTTTTCTGAACCACACGCTAAGACTATCAAAAGGATCAGTTCAAGGATCTTTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34903</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>9718</contig_pos>
        <strand>+</strand>
        <context>CAATGGAATG[A/C]GGGGGTGAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGGATGGTGAAGACAGTAAATCCAAAGAAGTATCTGGATCAATGGAATG</left_flank>
        <right_flank>GGGGGTGAGTCTACTGACTTTAAAGCGAATTTACCGTATTTCCTGTATTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGATTCTCAGAATCACGACGTCATTGGAAAAACGGTCTACGAAATTTCACGGATTTTCGAGATCCTTGATGGAGCCAATGATATTGATATTGATAAGGAATTCGGTAGAGTTGAGGAGAGATTCGAATGGGATCTGAAGAAACTTCGACTGTTTCGAGATGGTTTGTATTTTTTTTTCATATTTTCCAATTACCGTATTCTCTTTAATCGAAGCCCATCCAAACGGTATATTTTGAGCTCAATTATCTCGATTTCTGCGAAAGTTTCTGATATTTTTCACAGGAATCGAAATTAATTAGCTTACAGTTGGCGGGTTGGTTGGGCATTACAGGAAATACGTTAAGTGGTTTTATTGTAGAATCAAGTCTTTCTTCCGGTTTTCTGAACCACACGCTAAGACTATCAAAAGGATCAGTTCAAGGATCTTTATCGCGAGAAGCAGTGGAATGGATGGTGAAGACAGTAAATCCAAAGAAGTATCTGGATCAATGGAATGAGGGGGTGAGTCTACTGACTTTAAAGCGAATTTACCGTATTTCCTGTATTGAGGCTCATTCGAACACTCACCTTTGAGCTCGAATACCTAAATTTCTATAAAAGATAAGAAAACACTGTAAACTGAAAAAATATTCATCATAATTCCACTAATATTTCATCAGTTGACAAATTTTGGACATATCTTATGGGAATCGAGATAATTGAGTTCAAAGTTGACGGATTGTGAGCTTCAATCAGAGAGAATACGGTAGGTGGTTTCAGTCTTACGGCGTCGACGAGCAATGGATTTCAACATTTCAAGCCAATGAGTTTTTGAAGATGCCTGGTCATTTCACGGATAAGTGTTTGGTTGAAACTGGAAACAAAATTGATTTTATCACAAGGTATACCGTATAACCTGTAACAGAAGGACCGCCAGAATTTGAGCCAATTTATCTTGATCCCTGTGGAAGCTATCGAAACTAGTCAACTGATTAAATATTGATGTTGTTGTGATAAA</canonical>
            <polymorphic>TTTCGATTCTCAGAATCACGACGTCATTGGAAAAACGGTCTACGAAATTTCACGGATTTTCGAGATCCTTGATGGAGCCAATGATATTGATATTGATAAGGAATTCGGTAGAGTTGAGGAGAGATTCGAATGGGATCTGAAGAAACTTCGACTGTTTCGAGATGGTTTGTATTTTTTTTTCATATTTTCCAATTACCGTATTCTCTTTAATCGAAGCCCATCCAAACGGTATATTTTGAGCTCAATTATCTCGATTTCTGCGAAAGTTTCTGATATTTTTCACAGGAATCGAAATTAATTAGCTTACAGTTGGCGGGTTGGTTGGGCATTACAGGAAATACGTTAAGTGGTTTTATTGTAGAATCAAGTCTTTCTTCCGGTTTTCTGAACCACACGCTAAGACTATCAAAAGGATCAGTTCAAGGATCTTTATCGCGAGAAGCAGTGGAATGGATGGTGAAGACAGTAAATCCAAAGAAGTATCTGGATCAATGGAATGMGGGGGTGAGTCTACTGACTTTAAAGCGAATTTACCGTATTTCCTGTATTGAGGCTCATTCGAACACTCACCTTTGAGCTCGAATACCTAAATTTCTATAAAAGATAAGAAAACACTGTAAACTGAAAAAATATTCATCATAATTCCACTAATATTTCATCAGTTGACAAATTTTGGACATATCTTATGGGAATCGAGATAATTGAGTTCAAAGTTGACGGATTGTGAGCTTCAATCAGAGAGAATACGGTAGGTGGTTTCAGTCTTACGGCGTCGACGAGCAATGGATTTCAACATTTCAAGCCAATGAGTTTTTGAAGATGCCTGGTCATTTCACGGATAAGTGTTTGGTTGAAACTGGAAACAAAATTGATTTTATCACAAGGTATACCGTATAACCTGTAACAGAAGGACCGCCAGAATTTGAGCCAATTTATCTTGATCCCTGTGGAAGCTATCGAAACTAGTCAACTGATTAAATATTGATGTTGTTGTGATAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGGGCATTACAGGAAATA</pcr_primer_p1>
		<pcr_primer_p2>ATGAGCCTCAATACAGGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>GTTGGGCATTACAGGAAATACGTTAAGTGGTTTTATTGTAGAATCAAGTCTTTCTTCCGGTTTTCTGAACCACACGCTAAGACTATCAAAAGGATCAGTTCAAGGATCTTTATCGCGAGAAGCAGTGGAATGGATGGTGAAGACAGTAAATCCAAAGAAGTATCTGGATCAATGGAATGAGGGGGTGAGTCTACTGACTTTAAAGCGAATTTACCGTATTTCCTGTATTGAGGCTCAT</canonical_amplicon>
		<polymorphic_amplicon>GTTGGGCATTACAGGAAATACGTTAAGTGGTTTTATTGTAGAATCAAGTCTTTCTTCCGGTTTTCTGAACCACACGCTAAGACTATCAAAAGGATCAGTTCAAGGATCTTTATCGCGAGAAGCAGTGGAATGGATGGTGAAGACAGTAAATCCAAAGAAGTATCTGGATCAATGGAATGMGGGGGTGAGTCTACTGACTTTAAAGCGAATTTACCGTATTTCCTGTATTGAGGCTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34904</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>11652</contig_pos>
        <strand></strand>
        <context>tcccgtcttc[A/T]gtccaaaaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCGGCTCTCAAGTTTCCGATCACTTTGAAGCCTGTTTTTTCCCGTCTTC</left_flank>
        <right_flank>GTCCAAAAAAATGGCCTAAATGGGATGTTTGTTAGAGATCGGCAAATAGC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAACAACATTATATTTGAAAAAATAGATAAATTTAGGTACATTATCATAAGCATCATATGGAGCCAGACTACGTGTTGAATTGTACACCGGGTTATGAAATTTGGAGATCTAGGAAATACCCATTATGATTTTTGTTGTAATTTGTGATTTTGAATGAATTTATAAATTTATAAATTTTTGGGTTTTTTTTTTTTGGATTTTTAGCCTCAAACTTTACCGTAATTCCAAAGGGCATTGTCGGAAAAGCGGAAATTTTAAAATAGTCACTCGGCTGTCGGAGCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACATTATTTTATGTATTAGCTAAGGCTTGTGGGAGGCTTGGCCAAGACTTGTAAAGTCATGAAATTGGTCGGCACTCGCAGCCGAGCATTTTGATTTTGATCATTTTGAGGAGTCCGGAGCTCGGCTCTCAAGTTTCCGATCACTTTGAAGCCTGTTTTTTCCCGTCTTCAGTCCAAAAAAATGGCCTAAATGGGATGTTTGTTAGAGATCGGCAAATAGCTGAAAAACTAGGAATTTTCGAAAAAATTCTGTGAATGCAAAATTTTCAATTTGGGCCTGTTTTGCACCGTGTAAAGTTTTCCAGACTCCTGAAAATTGTCAAAATGGTCGAAAATCAACTGAGAACCACATTTGTGTATATCTAATTGACCGATACTGTATTTTCACTAATTTTTAGGGTAACTGCCGACTGGTAGAGTCTGAAAATCATATAACTGCGAATGATTCGTTTTCTGAGCTATTAGATAATGACGACGAAAGAATAAAAAAGATAAGAAACTACAAAAAGCATAAAATAGTTTGTCATTTAAGTTTGTGTACATATCATGAAGAATACTTCTTTGAAATGGTTCATTGAAATACACAAAAATTACAAATGACAAATGATTCGAGAAATTTGATCAGCCACCCATTGCGAATTGGATTCAGTTGCAGTGAAATACCAATCCTC</canonical>
            <polymorphic>GTAACAACATTATATTTGAAAAAATAGATAAATTTAGGTACATTATCATAAGCATCATATGGAGCCAGACTACGTGTTGAATTGTACACCGGGTTATGAAATTTGGAGATCTAGGAAATACCCATTATGATTTTTGTTGTAATTTGTGATTTTGAATGAATTTATAAATTTATAAATTTTTGGGTTTTTTTTTTTTGGATTTTTAGCCTCAAACTTTACCGTAATTCCAAAGGGCATTGTCGGAAAAGCGGAAATTTTAAAATAGTCACTCGGCTGTCGGAGCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACATTATTTTATGTATTAGCTAAGGCTTGTGGGAGGCTTGGCCAAGACTTGTAAAGTCATGAAATTGGTCGGCACTCGCAGCCGAGCATTTTGATTTTGATCATTTTGAGGAGTCCGGAGCTCGGCTCTCAAGTTTCCGATCACTTTGAAGCCTGTTTTTTCCCGTCTTCWGTCCAAAAAAATGGCCTAAATGGGATGTTTGTTAGAGATCGGCAAATAGCTGAAAAACTAGGAATTTTCGAAAAAATTCTGTGAATGCAAAATTTTCAATTTGGGCCTGTTTTGCACCGTGTAAAGTTTTCCAGACTCCTGAAAATTGTCAAAATGGTCGAAAATCAACTGAGAACCACATTTGTGTATATCTAATTGACCGATACTGTATTTTCACTAATTTTTAGGGTAACTGCCGACTGGTAGAGTCTGAAAATCATATAACTGCGAATGATTCGTTTTCTGAGCTATTAGATAATGACGACGAAAGAATAAAAAAGATAAGAAACTACAAAAAGCATAAAATAGTTTGTCATTTAAGTTTGTGTACATATCATGAAGAATACTTCTTTGAAATGGTTCATTGAAATACACAAAAATTACAAATGACAAATGATTCGAGAAATTTGATCAGCCACCCATTGCGAATTGGATTCAGTTGCAGTGAAATACCAATCCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAAAATAGTCACTCGGCTGTC</pcr_primer_p1>
		<pcr_primer_p2>GCAGTTACCCTAAAAATTAGTGA</pcr_primer_p2>
		<pcr_amplicon_size>480</pcr_amplicon_size>
		<canonical_amplicon>TTAAAATAGTCACTCGGCTGTCGGAGCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACATTATTTTATGTATTAGCTAAGGCTTGTGGGAGGCTTGGCCAAGACTTGTAAAGTCATGAAATTGGTCGGCACTCGCAGCCGAGCATTTTGATTTTGATCATTTTGAGGAGTCCGGAGCTCGGCTCTCAAGTTTCCGATCACTTTGAAGCCTGTTTTTTCCCGTCTTCAGTCCAAAAAAATGGCCTAAATGGGATGTTTGTTAGAGATCGGCAAATAGCTGAAAAACTAGGAATTTTCGAAAAAATTCTGTGAATGCAAAATTTTCAATTTGGGCCTGTTTTGCACCGTGTAAAGTTTTCCAGACTCCTGAAAATTGTCAAAATGGTCGAAAATCAACTGAGAACCACATTTGTGTATATCTAATTGACCGATACTGTATTTTCACTAATTTTTAGGGTAACTGC</canonical_amplicon>
		<polymorphic_amplicon>TTAAAATAGTCACTCGGCTGTCGGAGCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACATTATTTTATGTATTAGCTAAGGCTTGTGGGAGGCTTGGCCAAGACTTGTAAAGTCATGAAATTGGTCGGCACTCGCAGCCGAGCATTTTGATTTTGATCATTTTGAGGAGTCCGGAGCTCGGCTCTCAAGTTTCCGATCACTTTGAAGCCTGTTTTTTCCCGTCTTCWGTCCAAAAAAATGGCCTAAATGGGATGTTTGTTAGAGATCGGCAAATAGCTGAAAAACTAGGAATTTTCGAAAAAATTCTGTGAATGCAAAATTTTCAATTTGGGCCTGTTTTGCACCGTGTAAAGTTTTCCAGACTCCTGAAAATTGTCAAAATGGTCGAAAATCAACTGAGAACCACATTTGTGTATATCTAATTGACCGATACTGTATTTTCACTAATTTTTAGGGTAACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34905</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>11736</contig_pos>
        <strand></strand>
        <context>aaattctgtg[A/G]atgcaaaatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAGATCGGCAAATAGCTGAAAAACTAGGAATTTTCGAAAAAATTCTGTG</left_flank>
        <right_flank>ATGCAAAATTTTCAATTTGGGCCTGTTTTGCACCGTGTAAAGTTTTCCAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACACCGGGTTATGAAATTTGGAGATCTAGGAAATACCCATTATGATTTTTGTTGTAATTTGTGATTTTGAATGAATTTATAAATTTATAAATTTTTGGGTTTTTTTTTTTTGGATTTTTAGCCTCAAACTTTACCGTAATTCCAAAGGGCATTGTCGGAAAAGCGGAAATTTTAAAATAGTCACTCGGCTGTCGGAGCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACATTATTTTATGTATTAGCTAAGGCTTGTGGGAGGCTTGGCCAAGACTTGTAAAGTCATGAAATTGGTCGGCACTCGCAGCCGAGCATTTTGATTTTGATCATTTTGAGGAGTCCGGAGCTCGGCTCTCAAGTTTCCGATCACTTTGAAGCCTGTTTTTTCCCGTCTTCAGTCCAAAAAAATGGCCTAAATGGGATGTTTGTTAGAGATCGGCAAATAGCTGAAAAACTAGGAATTTTCGAAAAAATTCTGTGAATGCAAAATTTTCAATTTGGGCCTGTTTTGCACCGTGTAAAGTTTTCCAGACTCCTGAAAATTGTCAAAATGGTCGAAAATCAACTGAGAACCACATTTGTGTATATCTAATTGACCGATACTGTATTTTCACTAATTTTTAGGGTAACTGCCGACTGGTAGAGTCTGAAAATCATATAACTGCGAATGATTCGTTTTCTGAGCTATTAGATAATGACGACGAAAGAATAAAAAAGATAAGAAACTACAAAAAGCATAAAATAGTTTGTCATTTAAGTTTGTGTACATATCATGAAGAATACTTCTTTGAAATGGTTCATTGAAATACACAAAAATTACAAATGACAAATGATTCGAGAAATTTGATCAGCCACCCATTGCGAATTGGATTCAGTTGCAGTGAAATACCAATCCTCACTCTCTGCCAAATCTCCAAAATAGTTTGGCTGAGGTCCGATAGAGACTGCGATCGCACGGAACCCATATGTTGATTGCAATTG</canonical>
            <polymorphic>TACACCGGGTTATGAAATTTGGAGATCTAGGAAATACCCATTATGATTTTTGTTGTAATTTGTGATTTTGAATGAATTTATAAATTTATAAATTTTTGGGTTTTTTTTTTTTGGATTTTTAGCCTCAAACTTTACCGTAATTCCAAAGGGCATTGTCGGAAAAGCGGAAATTTTAAAATAGTCACTCGGCTGTCGGAGCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACATTATTTTATGTATTAGCTAAGGCTTGTGGGAGGCTTGGCCAAGACTTGTAAAGTCATGAAATTGGTCGGCACTCGCAGCCGAGCATTTTGATTTTGATCATTTTGAGGAGTCCGGAGCTCGGCTCTCAAGTTTCCGATCACTTTGAAGCCTGTTTTTTCCCGTCTTCAGTCCAAAAAAATGGCCTAAATGGGATGTTTGTTAGAGATCGGCAAATAGCTGAAAAACTAGGAATTTTCGAAAAAATTCTGTGRATGCAAAATTTTCAATTTGGGCCTGTTTTGCACCGTGTAAAGTTTTCCAGACTCCTGAAAATTGTCAAAATGGTCGAAAATCAACTGAGAACCACATTTGTGTATATCTAATTGACCGATACTGTATTTTCACTAATTTTTAGGGTAACTGCCGACTGGTAGAGTCTGAAAATCATATAACTGCGAATGATTCGTTTTCTGAGCTATTAGATAATGACGACGAAAGAATAAAAAAGATAAGAAACTACAAAAAGCATAAAATAGTTTGTCATTTAAGTTTGTGTACATATCATGAAGAATACTTCTTTGAAATGGTTCATTGAAATACACAAAAATTACAAATGACAAATGATTCGAGAAATTTGATCAGCCACCCATTGCGAATTGGATTCAGTTGCAGTGAAATACCAATCCTCACTCTCTGCCAAATCTCCAAAATAGTTTGGCTGAGGTCCGATAGAGACTGCGATCGCACGGAACCCATATGTTGATTGCAATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAAAATAGTCACTCGGCTGTC</pcr_primer_p1>
		<pcr_primer_p2>GCAGTTACCCTAAAAATTAGTGA</pcr_primer_p2>
		<pcr_amplicon_size>480</pcr_amplicon_size>
		<canonical_amplicon>TTAAAATAGTCACTCGGCTGTCGGAGCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACATTATTTTATGTATTAGCTAAGGCTTGTGGGAGGCTTGGCCAAGACTTGTAAAGTCATGAAATTGGTCGGCACTCGCAGCCGAGCATTTTGATTTTGATCATTTTGAGGAGTCCGGAGCTCGGCTCTCAAGTTTCCGATCACTTTGAAGCCTGTTTTTTCCCGTCTTCAGTCCAAAAAAATGGCCTAAATGGGATGTTTGTTAGAGATCGGCAAATAGCTGAAAAACTAGGAATTTTCGAAAAAATTCTGTGAATGCAAAATTTTCAATTTGGGCCTGTTTTGCACCGTGTAAAGTTTTCCAGACTCCTGAAAATTGTCAAAATGGTCGAAAATCAACTGAGAACCACATTTGTGTATATCTAATTGACCGATACTGTATTTTCACTAATTTTTAGGGTAACTGC</canonical_amplicon>
		<polymorphic_amplicon>TTAAAATAGTCACTCGGCTGTCGGAGCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACATTATTTTATGTATTAGCTAAGGCTTGTGGGAGGCTTGGCCAAGACTTGTAAAGTCATGAAATTGGTCGGCACTCGCAGCCGAGCATTTTGATTTTGATCATTTTGAGGAGTCCGGAGCTCGGCTCTCAAGTTTCCGATCACTTTGAAGCCTGTTTTTTCCCGTCTTCAGTCCAAAAAAATGGCCTAAATGGGATGTTTGTTAGAGATCGGCAAATAGCTGAAAAACTAGGAATTTTCGAAAAAATTCTGTGRATGCAAAATTTTCAATTTGGGCCTGTTTTGCACCGTGTAAAGTTTTCCAGACTCCTGAAAATTGTCAAAATGGTCGAAAATCAACTGAGAACCACATTTGTGTATATCTAATTGACCGATACTGTATTTTCACTAATTTTTAGGGTAACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34906</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>11799</contig_pos>
        <strand></strand>
        <context>tcctgaaaat[T/G]gtcaaaatgg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CAATTTGGGCCTGTTTTGCACCGTGTAAAGTTTTCCAGACTCCTGAAAAT</left_flank>
        <right_flank>GTCAAAATGGTCGAAAATCAACTGAGAACCACATTTGTGTATATCTAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTTGAATGAATTTATAAATTTATAAATTTTTGGGTTTTTTTTTTTTGGATTTTTAGCCTCAAACTTTACCGTAATTCCAAAGGGCATTGTCGGAAAAGCGGAAATTTTAAAATAGTCACTCGGCTGTCGGAGCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACATTATTTTATGTATTAGCTAAGGCTTGTGGGAGGCTTGGCCAAGACTTGTAAAGTCATGAAATTGGTCGGCACTCGCAGCCGAGCATTTTGATTTTGATCATTTTGAGGAGTCCGGAGCTCGGCTCTCAAGTTTCCGATCACTTTGAAGCCTGTTTTTTCCCGTCTTCAGTCCAAAAAAATGGCCTAAATGGGATGTTTGTTAGAGATCGGCAAATAGCTGAAAAACTAGGAATTTTCGAAAAAATTCTGTGAATGCAAAATTTTCAATTTGGGCCTGTTTTGCACCGTGTAAAGTTTTCCAGACTCCTGAAAATTGTCAAAATGGTCGAAAATCAACTGAGAACCACATTTGTGTATATCTAATTGACCGATACTGTATTTTCACTAATTTTTAGGGTAACTGCCGACTGGTAGAGTCTGAAAATCATATAACTGCGAATGATTCGTTTTCTGAGCTATTAGATAATGACGACGAAAGAATAAAAAAGATAAGAAACTACAAAAAGCATAAAATAGTTTGTCATTTAAGTTTGTGTACATATCATGAAGAATACTTCTTTGAAATGGTTCATTGAAATACACAAAAATTACAAATGACAAATGATTCGAGAAATTTGATCAGCCACCCATTGCGAATTGGATTCAGTTGCAGTGAAATACCAATCCTCACTCTCTGCCAAATCTCCAAAATAGTTTGGCTGAGGTCCGATAGAGACTGCGATCGCACGGAACCCATATGTTGATTGCAATTGGTGGAGGTAGCTTGTGGCACTTCCATCGAACACTGCTCCATCACTGAAATGTACTTGATATCT</canonical>
            <polymorphic>GATTTTGAATGAATTTATAAATTTATAAATTTTTGGGTTTTTTTTTTTTGGATTTTTAGCCTCAAACTTTACCGTAATTCCAAAGGGCATTGTCGGAAAAGCGGAAATTTTAAAATAGTCACTCGGCTGTCGGAGCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACATTATTTTATGTATTAGCTAAGGCTTGTGGGAGGCTTGGCCAAGACTTGTAAAGTCATGAAATTGGTCGGCACTCGCAGCCGAGCATTTTGATTTTGATCATTTTGAGGAGTCCGGAGCTCGGCTCTCAAGTTTCCGATCACTTTGAAGCCTGTTTTTTCCCGTCTTCAGTCCAAAAAAATGGCCTAAATGGGATGTTTGTTAGAGATCGGCAAATAGCTGAAAAACTAGGAATTTTCGAAAAAATTCTGTGAATGCAAAATTTTCAATTTGGGCCTGTTTTGCACCGTGTAAAGTTTTCCAGACTCCTGAAAATKGTCAAAATGGTCGAAAATCAACTGAGAACCACATTTGTGTATATCTAATTGACCGATACTGTATTTTCACTAATTTTTAGGGTAACTGCCGACTGGTAGAGTCTGAAAATCATATAACTGCGAATGATTCGTTTTCTGAGCTATTAGATAATGACGACGAAAGAATAAAAAAGATAAGAAACTACAAAAAGCATAAAATAGTTTGTCATTTAAGTTTGTGTACATATCATGAAGAATACTTCTTTGAAATGGTTCATTGAAATACACAAAAATTACAAATGACAAATGATTCGAGAAATTTGATCAGCCACCCATTGCGAATTGGATTCAGTTGCAGTGAAATACCAATCCTCACTCTCTGCCAAATCTCCAAAATAGTTTGGCTGAGGTCCGATAGAGACTGCGATCGCACGGAACCCATATGTTGATTGCAATTGGTGGAGGTAGCTTGTGGCACTTCCATCGAACACTGCTCCATCACTGAAATGTACTTGATATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>199 171 139 113 68 50 48 46 30 26 25 23 16 12 11 8 8 7</canonical_bands>
                <polymorphic_bands>199 171 139 113 96 68 48 30 26 25 23 16 12 11 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAAAATAGTCACTCGGCTGTC</pcr_primer_p1>
		<pcr_primer_p2>GCAGTTACCCTAAAAATTAGTGA</pcr_primer_p2>
		<pcr_amplicon_size>480</pcr_amplicon_size>
		<canonical_amplicon>TTAAAATAGTCACTCGGCTGTCGGAGCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACATTATTTTATGTATTAGCTAAGGCTTGTGGGAGGCTTGGCCAAGACTTGTAAAGTCATGAAATTGGTCGGCACTCGCAGCCGAGCATTTTGATTTTGATCATTTTGAGGAGTCCGGAGCTCGGCTCTCAAGTTTCCGATCACTTTGAAGCCTGTTTTTTCCCGTCTTCAGTCCAAAAAAATGGCCTAAATGGGATGTTTGTTAGAGATCGGCAAATAGCTGAAAAACTAGGAATTTTCGAAAAAATTCTGTGAATGCAAAATTTTCAATTTGGGCCTGTTTTGCACCGTGTAAAGTTTTCCAGACTCCTGAAAATTGTCAAAATGGTCGAAAATCAACTGAGAACCACATTTGTGTATATCTAATTGACCGATACTGTATTTTCACTAATTTTTAGGGTAACTGC</canonical_amplicon>
		<polymorphic_amplicon>TTAAAATAGTCACTCGGCTGTCGGAGCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACATTATTTTATGTATTAGCTAAGGCTTGTGGGAGGCTTGGCCAAGACTTGTAAAGTCATGAAATTGGTCGGCACTCGCAGCCGAGCATTTTGATTTTGATCATTTTGAGGAGTCCGGAGCTCGGCTCTCAAGTTTCCGATCACTTTGAAGCCTGTTTTTTCCCGTCTTCAGTCCAAAAAAATGGCCTAAATGGGATGTTTGTTAGAGATCGGCAAATAGCTGAAAAACTAGGAATTTTCGAAAAAATTCTGTGAATGCAAAATTTTCAATTTGGGCCTGTTTTGCACCGTGTAAAGTTTTCCAGACTCCTGAAAATKGTCAAAATGGTCGAAAATCAACTGAGAACCACATTTGTGTATATCTAATTGACCGATACTGTATTTTCACTAATTTTTAGGGTAACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34907</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>11838</contig_pos>
        <strand></strand>
        <context>ccacatttgt[G/A]tatatctaat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTCCTGAAAATTGTCAAAATGGTCGAAAATCAACTGAGAACCACATTTGT</left_flank>
        <right_flank>TATATCTAATTGACCGATACTGTATTTTCACTAATTTTTAGGGTAACTGC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTTTTTGGATTTTTAGCCTCAAACTTTACCGTAATTCCAAAGGGCATTGTCGGAAAAGCGGAAATTTTAAAATAGTCACTCGGCTGTCGGAGCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACATTATTTTATGTATTAGCTAAGGCTTGTGGGAGGCTTGGCCAAGACTTGTAAAGTCATGAAATTGGTCGGCACTCGCAGCCGAGCATTTTGATTTTGATCATTTTGAGGAGTCCGGAGCTCGGCTCTCAAGTTTCCGATCACTTTGAAGCCTGTTTTTTCCCGTCTTCAGTCCAAAAAAATGGCCTAAATGGGATGTTTGTTAGAGATCGGCAAATAGCTGAAAAACTAGGAATTTTCGAAAAAATTCTGTGAATGCAAAATTTTCAATTTGGGCCTGTTTTGCACCGTGTAAAGTTTTCCAGACTCCTGAAAATTGTCAAAATGGTCGAAAATCAACTGAGAACCACATTTGTGTATATCTAATTGACCGATACTGTATTTTCACTAATTTTTAGGGTAACTGCCGACTGGTAGAGTCTGAAAATCATATAACTGCGAATGATTCGTTTTCTGAGCTATTAGATAATGACGACGAAAGAATAAAAAAGATAAGAAACTACAAAAAGCATAAAATAGTTTGTCATTTAAGTTTGTGTACATATCATGAAGAATACTTCTTTGAAATGGTTCATTGAAATACACAAAAATTACAAATGACAAATGATTCGAGAAATTTGATCAGCCACCCATTGCGAATTGGATTCAGTTGCAGTGAAATACCAATCCTCACTCTCTGCCAAATCTCCAAAATAGTTTGGCTGAGGTCCGATAGAGACTGCGATCGCACGGAACCCATATGTTGATTGCAATTGGTGGAGGTAGCTTGTGGCACTTCCATCGAACACTGCTCCATCACTGAAATGTACTTGATATCTTTGAATTTTTCTTTCTTCAGACTCACTCAACACCAACAG</canonical>
            <polymorphic>TTTTTTTTTTGGATTTTTAGCCTCAAACTTTACCGTAATTCCAAAGGGCATTGTCGGAAAAGCGGAAATTTTAAAATAGTCACTCGGCTGTCGGAGCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACATTATTTTATGTATTAGCTAAGGCTTGTGGGAGGCTTGGCCAAGACTTGTAAAGTCATGAAATTGGTCGGCACTCGCAGCCGAGCATTTTGATTTTGATCATTTTGAGGAGTCCGGAGCTCGGCTCTCAAGTTTCCGATCACTTTGAAGCCTGTTTTTTCCCGTCTTCAGTCCAAAAAAATGGCCTAAATGGGATGTTTGTTAGAGATCGGCAAATAGCTGAAAAACTAGGAATTTTCGAAAAAATTCTGTGAATGCAAAATTTTCAATTTGGGCCTGTTTTGCACCGTGTAAAGTTTTCCAGACTCCTGAAAATTGTCAAAATGGTCGAAAATCAACTGAGAACCACATTTGTRTATATCTAATTGACCGATACTGTATTTTCACTAATTTTTAGGGTAACTGCCGACTGGTAGAGTCTGAAAATCATATAACTGCGAATGATTCGTTTTCTGAGCTATTAGATAATGACGACGAAAGAATAAAAAAGATAAGAAACTACAAAAAGCATAAAATAGTTTGTCATTTAAGTTTGTGTACATATCATGAAGAATACTTCTTTGAAATGGTTCATTGAAATACACAAAAATTACAAATGACAAATGATTCGAGAAATTTGATCAGCCACCCATTGCGAATTGGATTCAGTTGCAGTGAAATACCAATCCTCACTCTCTGCCAAATCTCCAAAATAGTTTGGCTGAGGTCCGATAGAGACTGCGATCGCACGGAACCCATATGTTGATTGCAATTGGTGGAGGTAGCTTGTGGCACTTCCATCGAACACTGCTCCATCACTGAAATGTACTTGATATCTTTGAATTTTTCTTTCTTCAGACTCACTCAACACCAACAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACNNNNGTG</site>
                <isoschizomers>
                    <enzyme>AleI</enzyme>
                    <enzyme>OliI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>151 111 82 69 57 57 46 45 44 43 37 33 30 30 29 29 15 14 13 13 11 11 8 7 7 5 3</canonical_bands>
                <polymorphic_bands>151 111 82 69 57 57 46 45 44 43 38 37 33 30 29 29 15 14 13 13 11 11 7 7 5 3</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>495 449 56</canonical_bands>
                <polymorphic_bands>944 56</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAAAATAGTCACTCGGCTGTC</pcr_primer_p1>
		<pcr_primer_p2>CGGCAGTTACCCTAAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>482</pcr_amplicon_size>
		<canonical_amplicon>TTAAAATAGTCACTCGGCTGTCGGAGCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACATTATTTTATGTATTAGCTAAGGCTTGTGGGAGGCTTGGCCAAGACTTGTAAAGTCATGAAATTGGTCGGCACTCGCAGCCGAGCATTTTGATTTTGATCATTTTGAGGAGTCCGGAGCTCGGCTCTCAAGTTTCCGATCACTTTGAAGCCTGTTTTTTCCCGTCTTCAGTCCAAAAAAATGGCCTAAATGGGATGTTTGTTAGAGATCGGCAAATAGCTGAAAAACTAGGAATTTTCGAAAAAATTCTGTGAATGCAAAATTTTCAATTTGGGCCTGTTTTGCACCGTGTAAAGTTTTCCAGACTCCTGAAAATTGTCAAAATGGTCGAAAATCAACTGAGAACCACATTTGTGTATATCTAATTGACCGATACTGTATTTTCACTAATTTTTAGGGTAACTGCCG</canonical_amplicon>
		<polymorphic_amplicon>TTAAAATAGTCACTCGGCTGTCGGAGCCAATACTTGGCCAGACCTCCCACAAGTCTAGCACAAGTCTCCGAGCACATTATTTTATGTATTAGCTAAGGCTTGTGGGAGGCTTGGCCAAGACTTGTAAAGTCATGAAATTGGTCGGCACTCGCAGCCGAGCATTTTGATTTTGATCATTTTGAGGAGTCCGGAGCTCGGCTCTCAAGTTTCCGATCACTTTGAAGCCTGTTTTTTCCCGTCTTCAGTCCAAAAAAATGGCCTAAATGGGATGTTTGTTAGAGATCGGCAAATAGCTGAAAAACTAGGAATTTTCGAAAAAATTCTGTGAATGCAAAATTTTCAATTTGGGCCTGTTTTGCACCGTGTAAAGTTTTCCAGACTCCTGAAAATTGTCAAAATGGTCGAAAATCAACTGAGAACCACATTTGTRTATATCTAATTGACCGATACTGTATTTTCACTAATTTTTAGGGTAACTGCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34908</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>34126</contig_pos>
        <strand></strand>
        <context>catcagtaga[G/C]tggccaagtt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AGCTCAAATTTGAACTGCTAATTGTAAGTTTTAAATGATTCATCAGTAGA</left_flank>
        <right_flank>TGGCCAAGTTTCAAGTTATTAGATCGACTTGGAGTTGAGTTATCGCTTGG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCAACAACGATTCTTCTCAAGTCTCCACGAAGGATTTTACTGCTACTTTTTGTTCTTCACAATTTCTTTTATTCTAACAGTTCGATTCGATGAAAAACTACCGAAGAAGGGAGTTTCAGAAGTTGTAGAAGTTTCAAAAGAAGCTGAAAAAGAGAAAAAAGATAATTGAAAAAATAGAATGTACAAGCTTTTGATAATTTTTTCGGGTATATATTTTTTAATAGCTAATATAATAAACTTTTCGAAATTATGAGGTTTTGTCAACTTCCAAAATGATATCAAAATTATTGTTAGTTATCATAAGAAACTTTTAAAACAGTTTTTTCTCCAATTTGCTAAATGTCATCGGTTCAAAAGAACTAATTAATCCCAGCTGACACTTTGCAAGGTTACCCGATCTAAAGCTTGTACTAGCATAAAACTTTGATGAATCGTTGTACTGATTGTGAGCTCAAATTTGAACTGCTAATTGTAAGTTTTAAATGATTCATCAGTAGAGTGGCCAAGTTTCAAGTTATTAGATCGACTTGGAGTTGAGTTATCGCTTGGCAAAGTTGCTTCATCTCATGAAAATCACAACGGCGTGCAAGAAACATTTCGTCCTTGGACAGTCATAACACCATCTACATTTGAAGAATCCCTTTGAAAATTTCAGTAGCTTTGAATCAAACGTAAAATTATGTTTCTACTAATTATCGAACTTCCAAGGTACTTATGTCTAAAGATATACCCGCTTTTATCAATTGTCCGCCACCATGTAACTCAAAAACTGTCGTTTTGAATAACTCCACCACTTTCATCAACACAGTAATACAAAAAATTATGCATTTTGGGAACTCCCCACCCAGGAAAAAATATTCGAAATTTTTTCCGGTTTCCTCTTTGCTCGGTAAAGCAACAACGTGACTTCCAATCGTTGACCGGAGTGCATGTTGACATTCTTCTCTCTCCGGCTACTATCATAGACCGTTTGGCAATTAAAATATGTTTAATGTCGAG</canonical>
            <polymorphic>TGCAACAACGATTCTTCTCAAGTCTCCACGAAGGATTTTACTGCTACTTTTTGTTCTTCACAATTTCTTTTATTCTAACAGTTCGATTCGATGAAAAACTACCGAAGAAGGGAGTTTCAGAAGTTGTAGAAGTTTCAAAAGAAGCTGAAAAAGAGAAAAAAGATAATTGAAAAAATAGAATGTACAAGCTTTTGATAATTTTTTCGGGTATATATTTTTTAATAGCTAATATAATAAACTTTTCGAAATTATGAGGTTTTGTCAACTTCCAAAATGATATCAAAATTATTGTTAGTTATCATAAGAAACTTTTAAAACAGTTTTTTCTCCAATTTGCTAAATGTCATCGGTTCAAAAGAACTAATTAATCCCAGCTGACACTTTGCAAGGTTACCCGATCTAAAGCTTGTACTAGCATAAAACTTTGATGAATCGTTGTACTGATTGTGAGCTCAAATTTGAACTGCTAATTGTAAGTTTTAAATGATTCATCAGTAGASTGGCCAAGTTTCAAGTTATTAGATCGACTTGGAGTTGAGTTATCGCTTGGCAAAGTTGCTTCATCTCATGAAAATCACAACGGCGTGCAAGAAACATTTCGTCCTTGGACAGTCATAACACCATCTACATTTGAAGAATCCCTTTGAAAATTTCAGTAGCTTTGAATCAAACGTAAAATTATGTTTCTACTAATTATCGAACTTCCAAGGTACTTATGTCTAAAGATATACCCGCTTTTATCAATTGTCCGCCACCATGTAACTCAAAAACTGTCGTTTTGAATAACTCCACCACTTTCATCAACACAGTAATACAAAAAATTATGCATTTTGGGAACTCCCCACCCAGGAAAAAATATTCGAAATTTTTTCCGGTTTCCTCTTTGCTCGGTAAAGCAACAACGTGACTTCCAATCGTTGACCGGAGTGCATGTTGACATTCTTCTCTCTCCGGCTACTATCATAGACCGTTTGGCAATTAAAATATGTTTAATGTCGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>320 134 75 71 69 62 53 38 37 33 32 28 23 12 10 3</canonical_bands>
                <polymorphic_bands>320 134 128 71 69 62 38 37 33 32 28 23 12 10 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTAATCCCAGCTGACACTTT</pcr_primer_p1>
		<pcr_primer_p2>AAACGACAGTTTTTGAGTTACAT</pcr_primer_p2>
		<pcr_amplicon_size>416</pcr_amplicon_size>
		<canonical_amplicon>ATTAATCCCAGCTGACACTTTGCAAGGTTACCCGATCTAAAGCTTGTACTAGCATAAAACTTTGATGAATCGTTGTACTGATTGTGAGCTCAAATTTGAACTGCTAATTGTAAGTTTTAAATGATTCATCAGTAGAGTGGCCAAGTTTCAAGTTATTAGATCGACTTGGAGTTGAGTTATCGCTTGGCAAAGTTGCTTCATCTCATGAAAATCACAACGGCGTGCAAGAAACATTTCGTCCTTGGACAGTCATAACACCATCTACATTTGAAGAATCCCTTTGAAAATTTCAGTAGCTTTGAATCAAACGTAAAATTATGTTTCTACTAATTATCGAACTTCCAAGGTACTTATGTCTAAAGATATACCCGCTTTTATCAATTGTCCGCCACCATGTAACTCAAAAACTGTCGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTAATCCCAGCTGACACTTTGCAAGGTTACCCGATCTAAAGCTTGTACTAGCATAAAACTTTGATGAATCGTTGTACTGATTGTGAGCTCAAATTTGAACTGCTAATTGTAAGTTTTAAATGATTCATCAGTAGASTGGCCAAGTTTCAAGTTATTAGATCGACTTGGAGTTGAGTTATCGCTTGGCAAAGTTGCTTCATCTCATGAAAATCACAACGGCGTGCAAGAAACATTTCGTCCTTGGACAGTCATAACACCATCTACATTTGAAGAATCCCTTTGAAAATTTCAGTAGCTTTGAATCAAACGTAAAATTATGTTTCTACTAATTATCGAACTTCCAAGGTACTTATGTCTAAAGATATACCCGCTTTTATCAATTGTCCGCCACCATGTAACTCAAAAACTGTCGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34909</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>34373</contig_pos>
        <strand>+</strand>
        <context>tttatcaatt[C/T]tccgccaccA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGAACTTCCAAGGTACTTATGTCTAAAGATATACCCGCTTTTATCAATT</left_flank>
        <right_flank>TCCGCCACCATGTAACTCAAAAACTGTCGTTTTGAATAACTCCACCACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTATGAGGTTTTGTCAACTTCCAAAATGATATCAAAATTATTGTTAGTTATCATAAGAAACTTTTAAAACAGTTTTTTCTCCAATTTGCTAAATGTCATCGGTTCAAAAGAACTAATTAATCCCAGCTGACACTTTGCAAGGTTACCCGATCTAAAGCTTGTACTAGCATAAAACTTTGATGAATCGTTGTACTGATTGTGAGCTCAAATTTGAACTGCTAATTGTAAGTTTTAAATGATTCATCAGTAGAGTGGCCAAGTTTCAAGTTATTAGATCGACTTGGAGTTGAGTTATCGCTTGGCAAAGTTGCTTCATCTCATGAAAATCACAACGGCGTGCAAGAAACATTTCGTCCTTGGACAGTCATAACACCATCTACATTTGAAGAATCCCTTTGAAAATTTCAGTAGCTTTGAATCAAACGTAAAATTATGTTTCTACTAATTATCGAACTTCCAAGGTACTTATGTCTAAAGATATACCCGCTTTTATCAATTGTCCGCCACCATGTAACTCAAAAACTGTCGTTTTGAATAACTCCACCACTTTCATCAACACAGTAATACAAAAAATTATGCATTTTGGGAACTCCCCACCCAGGAAAAAATATTCGAAATTTTTTCCGGTTTCCTCTTTGCTCGGTAAAGCAACAACGTGACTTCCAATCGTTGACCGGAGTGCATGTTGACATTCTTCTCTCTCCGGCTACTATCATAGACCGTTTGGCAATTAAAATATGTTTAATGTCGAGATTTAATTACCTCAATTCGACGTGTTTTACGTATCATCACTTATCACTCTTCTATTGTGCAGCTTCTTGTCATTTCATTCATTCTGTAATTAATTTTCAAACTTTTTTCTAGGTCATTTATTTTCCAGGTTAAACCAAAAGAATGCAGCTCAATAATCAAGATAAAACGTTCCTGGGAGCTTCCCTGGCAACTGCTGTGAGTCAGGGTTACTGTAGTTTTAAAACGTGTTTATTCTTCTAGATTATT</canonical>
            <polymorphic>ATTATGAGGTTTTGTCAACTTCCAAAATGATATCAAAATTATTGTTAGTTATCATAAGAAACTTTTAAAACAGTTTTTTCTCCAATTTGCTAAATGTCATCGGTTCAAAAGAACTAATTAATCCCAGCTGACACTTTGCAAGGTTACCCGATCTAAAGCTTGTACTAGCATAAAACTTTGATGAATCGTTGTACTGATTGTGAGCTCAAATTTGAACTGCTAATTGTAAGTTTTAAATGATTCATCAGTAGAGTGGCCAAGTTTCAAGTTATTAGATCGACTTGGAGTTGAGTTATCGCTTGGCAAAGTTGCTTCATCTCATGAAAATCACAACGGCGTGCAAGAAACATTTCGTCCTTGGACAGTCATAACACCATCTACATTTGAAGAATCCCTTTGAAAATTTCAGTAGCTTTGAATCAAACGTAAAATTATGTTTCTACTAATTATCGAACTTCCAAGGTACTTATGTCTAAAGATATACCCGCTTTTATCAATTYTCCGCCACCATGTAACTCAAAAACTGTCGTTTTGAATAACTCCACCACTTTCATCAACACAGTAATACAAAAAATTATGCATTTTGGGAACTCCCCACCCAGGAAAAAATATTCGAAATTTTTTCCGGTTTCCTCTTTGCTCGGTAAAGCAACAACGTGACTTCCAATCGTTGACCGGAGTGCATGTTGACATTCTTCTCTCTCCGGCTACTATCATAGACCGTTTGGCAATTAAAATATGTTTAATGTCGAGATTTAATTACCTCAATTCGACGTGTTTTACGTATCATCACTTATCACTCTTCTATTGTGCAGCTTCTTGTCATTTCATTCATTCTGTAATTAATTTTCAAACTTTTTTCTAGGTCATTTATTTTCCAGGTTAAACCAAAAGAATGCAGCTCAATAATCAAGATAAAACGTTCCTGGGAGCTTCCCTGGCAACTGCTGTGAGTCAGGGTTACTGTAGTTTTAAAACGTGTTTATTCTTCTAGATTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTAATCCCAGCTGACACTTT</pcr_primer_p1>
		<pcr_primer_p2>GATGAAAGTGGTGGAGTTATTC</pcr_primer_p2>
		<pcr_amplicon_size>439</pcr_amplicon_size>
		<canonical_amplicon>ATTAATCCCAGCTGACACTTTGCAAGGTTACCCGATCTAAAGCTTGTACTAGCATAAAACTTTGATGAATCGTTGTACTGATTGTGAGCTCAAATTTGAACTGCTAATTGTAAGTTTTAAATGATTCATCAGTAGAGTGGCCAAGTTTCAAGTTATTAGATCGACTTGGAGTTGAGTTATCGCTTGGCAAAGTTGCTTCATCTCATGAAAATCACAACGGCGTGCAAGAAACATTTCGTCCTTGGACAGTCATAACACCATCTACATTTGAAGAATCCCTTTGAAAATTTCAGTAGCTTTGAATCAAACGTAAAATTATGTTTCTACTAATTATCGAACTTCCAAGGTACTTATGTCTAAAGATATACCCGCTTTTATCAATTGTCCGCCACCATGTAACTCAAAAACTGTCGTTTTGAATAACTCCACCACTTTCATC</canonical_amplicon>
		<polymorphic_amplicon>ATTAATCCCAGCTGACACTTTGCAAGGTTACCCGATCTAAAGCTTGTACTAGCATAAAACTTTGATGAATCGTTGTACTGATTGTGAGCTCAAATTTGAACTGCTAATTGTAAGTTTTAAATGATTCATCAGTAGAGTGGCCAAGTTTCAAGTTATTAGATCGACTTGGAGTTGAGTTATCGCTTGGCAAAGTTGCTTCATCTCATGAAAATCACAACGGCGTGCAAGAAACATTTCGTCCTTGGACAGTCATAACACCATCTACATTTGAAGAATCCCTTTGAAAATTTCAGTAGCTTTGAATCAAACGTAAAATTATGTTTCTACTAATTATCGAACTTCCAAGGTACTTATGTCTAAAGATATACCCGCTTTTATCAATTYTCCGCCACCATGTAACTCAAAAACTGTCGTTTTGAATAACTCCACCACTTTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34910</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>44333</contig_pos>
        <strand></strand>
        <context>tgagagctca[G/A]ttatctcggt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTGAGACCTGTAATAGAAGGGCCCTCACACTGGCAAGTTTGAGAGCTCA</left_flank>
        <right_flank>TTATCTCGGTTTCTATGAAAGTCATAAAAAATGTGTGAACTGATAAAATG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAAACATTAGGGTTTGTTGGAGCGGTCATGAGATATACAAAAACGTATTTTCCGGCTGGTTTTCGGCCATTTTGACAATTTTAAGGATTCTGGAGCTCGGGATTTTCAGATCACTTTTAAATTTTGGAGGATGTAAAACAGATATAGATTGAAAAATTGGCATTCACAGAATTTTCTGAAAATCCCTAGTTTTTCCTGCTTTTCGTCGATTTCTGAAAGACACCCATTTGTTGCCCGTTTTTGCACTGACAACATGAAAAAACAGGTGTCATTTAGAAATCGCTAATAGCTGAAAAGCTTTGTATTTTCAAAAAATTCTGCGAATGCGAAGTTGTGAAGTCTGTTTTACACTCTATAAAATGTTCAAATTGATCGGAAACTTAACAGACGGGCTTCAGACTTTTAAAAATGTGCCAAAACGGCCGAAAATTAACTGAAAAATAGATTTTTGAGACCTGTAATAGAAGGGCCCTCACACTGGCAAGTTTGAGAGCTCAGTTATCTCGGTTTCTATGAAAGTCATAAAAAATGTGTGAACTGATAAAATGTTTATGATGATACGATAAAAAATTTGTCAGTTGACAACTTTTTGATATCTGTGGCAGGCATTGAGATAAGTTAGCTAAAAGTCAAAAGTTACGGGTCCCTTCTATTACAGTTTTTACGGTATCATATGGACCGGTACTGTATTACGGTTTGGGATTTGATTATATGACCAATTAAAGGCTGGTAGACCGTATCAAGTCAGAAAGAAGTTCCCAGTGACTTCAAAATGAAACAGTTTTGTGACGAAAGCCACATCAAAAATGGAACGAAACAAAAATTATTTTTTCAGGCTGGTATGCAAAAATCTGAGCTGTGGAAGAGAAAATCTGGTTGCCGCGACCACGACTCAACTACCGTCGTTATCAAAAAAATTTCTCAACTTTCGTCCGTTTTCCGGCAATTTTTTAGGTTTAGAAAAATTTCATTCTCCGACTTGTTTGGAGGTTTTCAAC</canonical>
            <polymorphic>TCAAAACATTAGGGTTTGTTGGAGCGGTCATGAGATATACAAAAACGTATTTTCCGGCTGGTTTTCGGCCATTTTGACAATTTTAAGGATTCTGGAGCTCGGGATTTTCAGATCACTTTTAAATTTTGGAGGATGTAAAACAGATATAGATTGAAAAATTGGCATTCACAGAATTTTCTGAAAATCCCTAGTTTTTCCTGCTTTTCGTCGATTTCTGAAAGACACCCATTTGTTGCCCGTTTTTGCACTGACAACATGAAAAAACAGGTGTCATTTAGAAATCGCTAATAGCTGAAAAGCTTTGTATTTTCAAAAAATTCTGCGAATGCGAAGTTGTGAAGTCTGTTTTACACTCTATAAAATGTTCAAATTGATCGGAAACTTAACAGACGGGCTTCAGACTTTTAAAAATGTGCCAAAACGGCCGAAAATTAACTGAAAAATAGATTTTTGAGACCTGTAATAGAAGGGCCCTCACACTGGCAAGTTTGAGAGCTCARTTATCTCGGTTTCTATGAAAGTCATAAAAAATGTGTGAACTGATAAAATGTTTATGATGATACGATAAAAAATTTGTCAGTTGACAACTTTTTGATATCTGTGGCAGGCATTGAGATAAGTTAGCTAAAAGTCAAAAGTTACGGGTCCCTTCTATTACAGTTTTTACGGTATCATATGGACCGGTACTGTATTACGGTTTGGGATTTGATTATATGACCAATTAAAGGCTGGTAGACCGTATCAAGTCAGAAAGAAGTTCCCAGTGACTTCAAAATGAAACAGTTTTGTGACGAAAGCCACATCAAAAATGGAACGAAACAAAAATTATTTTTTCAGGCTGGTATGCAAAAATCTGAGCTGTGGAAGAGAAAATCTGGTTGCCGCGACCACGACTCAACTACCGTCGTTATCAAAAAAATTTCTCAACTTTCGTCCGTTTTCCGGCAATTTTTTAGGTTTAGAAAAATTTCATTCTCCGACTTGTTTGGAGGTTTTCAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>496 358 146</canonical_bands>
                <polymorphic_bands>854 146</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTGAGAGATCAAAACATTAGG</pcr_primer_p1>
		<pcr_primer_p2>CCCAAACCGTAATACAGTACC</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>AGTTATCTCGGTTTCTATGAAAGTCATAAAAAATGTGTGAACTGATAAAATGTTTATGATGATACGATAAAAAATTTGTCAGTTGACAACTTTTTGATATCTGTGGCAGGCATTGAGATAAGTTAGCTAAAAGTCAAAAGTTACGGGTCCCTTCTATTACAGTTTTTACGGTATCATATGGACCGGTACTGTATTACGGTTTGGG</canonical_amplicon>
		<polymorphic_amplicon>ARTTATCTCGGTTTCTATGAAAGTCATAAAAAATGTGTGAACTGATAAAATGTTTATGATGATACGATAAAAAATTTGTCAGTTGACAACTTTTTGATATCTGTGGCAGGCATTGAGATAAGTTAGCTAAAAGTCAAAAGTTACGGGTCCCTTCTATTACAGTTTTTACGGTATCATATGGACCGGTACTGTATTACGGTTTGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34911</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>44399</contig_pos>
        <strand></strand>
        <context>gatgatacga[T/A]aaaaaatttg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGAAAGTCATAAAAAATGTGTGAACTGATAAAATGTTTATGATGATACGA</left_flank>
        <right_flank>AAAAAATTTGTCAGTTGACAACTTTTTGATATCTGTGGCAGGCATTGAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCCATTTTGACAATTTTAAGGATTCTGGAGCTCGGGATTTTCAGATCACTTTTAAATTTTGGAGGATGTAAAACAGATATAGATTGAAAAATTGGCATTCACAGAATTTTCTGAAAATCCCTAGTTTTTCCTGCTTTTCGTCGATTTCTGAAAGACACCCATTTGTTGCCCGTTTTTGCACTGACAACATGAAAAAACAGGTGTCATTTAGAAATCGCTAATAGCTGAAAAGCTTTGTATTTTCAAAAAATTCTGCGAATGCGAAGTTGTGAAGTCTGTTTTACACTCTATAAAATGTTCAAATTGATCGGAAACTTAACAGACGGGCTTCAGACTTTTAAAAATGTGCCAAAACGGCCGAAAATTAACTGAAAAATAGATTTTTGAGACCTGTAATAGAAGGGCCCTCACACTGGCAAGTTTGAGAGCTCAGTTATCTCGGTTTCTATGAAAGTCATAAAAAATGTGTGAACTGATAAAATGTTTATGATGATACGATAAAAAATTTGTCAGTTGACAACTTTTTGATATCTGTGGCAGGCATTGAGATAAGTTAGCTAAAAGTCAAAAGTTACGGGTCCCTTCTATTACAGTTTTTACGGTATCATATGGACCGGTACTGTATTACGGTTTGGGATTTGATTATATGACCAATTAAAGGCTGGTAGACCGTATCAAGTCAGAAAGAAGTTCCCAGTGACTTCAAAATGAAACAGTTTTGTGACGAAAGCCACATCAAAAATGGAACGAAACAAAAATTATTTTTTCAGGCTGGTATGCAAAAATCTGAGCTGTGGAAGAGAAAATCTGGTTGCCGCGACCACGACTCAACTACCGTCGTTATCAAAAAAATTTCTCAACTTTCGTCCGTTTTCCGGCAATTTTTTAGGTTTAGAAAAATTTCATTCTCCGACTTGTTTGGAGGTTTTCAACACATCGTTACCCTTCAGTTCAACTAGTAGAAAAACTGAAAATTTCAAGTTTTTTTCTAGGATGTTA</canonical>
            <polymorphic>GGCCATTTTGACAATTTTAAGGATTCTGGAGCTCGGGATTTTCAGATCACTTTTAAATTTTGGAGGATGTAAAACAGATATAGATTGAAAAATTGGCATTCACAGAATTTTCTGAAAATCCCTAGTTTTTCCTGCTTTTCGTCGATTTCTGAAAGACACCCATTTGTTGCCCGTTTTTGCACTGACAACATGAAAAAACAGGTGTCATTTAGAAATCGCTAATAGCTGAAAAGCTTTGTATTTTCAAAAAATTCTGCGAATGCGAAGTTGTGAAGTCTGTTTTACACTCTATAAAATGTTCAAATTGATCGGAAACTTAACAGACGGGCTTCAGACTTTTAAAAATGTGCCAAAACGGCCGAAAATTAACTGAAAAATAGATTTTTGAGACCTGTAATAGAAGGGCCCTCACACTGGCAAGTTTGAGAGCTCAGTTATCTCGGTTTCTATGAAAGTCATAAAAAATGTGTGAACTGATAAAATGTTTATGATGATACGAWAAAAAATTTGTCAGTTGACAACTTTTTGATATCTGTGGCAGGCATTGAGATAAGTTAGCTAAAAGTCAAAAGTTACGGGTCCCTTCTATTACAGTTTTTACGGTATCATATGGACCGGTACTGTATTACGGTTTGGGATTTGATTATATGACCAATTAAAGGCTGGTAGACCGTATCAAGTCAGAAAGAAGTTCCCAGTGACTTCAAAATGAAACAGTTTTGTGACGAAAGCCACATCAAAAATGGAACGAAACAAAAATTATTTTTTCAGGCTGGTATGCAAAAATCTGAGCTGTGGAAGAGAAAATCTGGTTGCCGCGACCACGACTCAACTACCGTCGTTATCAAAAAAATTTCTCAACTTTCGTCCGTTTTCCGGCAATTTTTTAGGTTTAGAAAAATTTCATTCTCCGACTTGTTTGGAGGTTTTCAACACATCGTTACCCTTCAGTTCAACTAGTAGAAAAACTGAAAATTTCAAGTTTTTTTCTAGGATGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTGAGAGATCAAAACATTAGG</pcr_primer_p1>
		<pcr_primer_p2>CCCAAACCGTAATACAGTACC</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>ATAAAAAATTTGTCAGTTGACAACTTTTTGATATCTGTGGCAGGCATTGAGATAAGTTAGCTAAAAGTCAAAAGTTACGGGTCCCTTCTATTACAGTTTTTACGGTATCATATGGACCGGTACTGTATTACGGTTTGGG</canonical_amplicon>
		<polymorphic_amplicon>AWAAAAAATTTGTCAGTTGACAACTTTTTGATATCTGTGGCAGGCATTGAGATAAGTTAGCTAAAAGTCAAAAGTTACGGGTCCCTTCTATTACAGTTTTTACGGTATCATATGGACCGGTACTGTATTACGGTTTGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34912</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>44427</contig_pos>
        <strand></strand>
        <context>acaacttttt[G/T]atatctgtgg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAAAATGTTTATGATGATACGATAAAAAATTTGTCAGTTGACAACTTTTT</left_flank>
        <right_flank>ATATCTGTGGCAGGCATTGAGATAAGTTAGCTAAAAGTCAAAAGTTACGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGCTCGGGATTTTCAGATCACTTTTAAATTTTGGAGGATGTAAAACAGATATAGATTGAAAAATTGGCATTCACAGAATTTTCTGAAAATCCCTAGTTTTTCCTGCTTTTCGTCGATTTCTGAAAGACACCCATTTGTTGCCCGTTTTTGCACTGACAACATGAAAAAACAGGTGTCATTTAGAAATCGCTAATAGCTGAAAAGCTTTGTATTTTCAAAAAATTCTGCGAATGCGAAGTTGTGAAGTCTGTTTTACACTCTATAAAATGTTCAAATTGATCGGAAACTTAACAGACGGGCTTCAGACTTTTAAAAATGTGCCAAAACGGCCGAAAATTAACTGAAAAATAGATTTTTGAGACCTGTAATAGAAGGGCCCTCACACTGGCAAGTTTGAGAGCTCAGTTATCTCGGTTTCTATGAAAGTCATAAAAAATGTGTGAACTGATAAAATGTTTATGATGATACGATAAAAAATTTGTCAGTTGACAACTTTTTGATATCTGTGGCAGGCATTGAGATAAGTTAGCTAAAAGTCAAAAGTTACGGGTCCCTTCTATTACAGTTTTTACGGTATCATATGGACCGGTACTGTATTACGGTTTGGGATTTGATTATATGACCAATTAAAGGCTGGTAGACCGTATCAAGTCAGAAAGAAGTTCCCAGTGACTTCAAAATGAAACAGTTTTGTGACGAAAGCCACATCAAAAATGGAACGAAACAAAAATTATTTTTTCAGGCTGGTATGCAAAAATCTGAGCTGTGGAAGAGAAAATCTGGTTGCCGCGACCACGACTCAACTACCGTCGTTATCAAAAAAATTTCTCAACTTTCGTCCGTTTTCCGGCAATTTTTTAGGTTTAGAAAAATTTCATTCTCCGACTTGTTTGGAGGTTTTCAACACATCGTTACCCTTCAGTTCAACTAGTAGAAAAACTGAAAATTTCAAGTTTTTTTCTAGGATGTTATGACTCTCCTTGTTCTTTTTCATGAATC</canonical>
            <polymorphic>GAGCTCGGGATTTTCAGATCACTTTTAAATTTTGGAGGATGTAAAACAGATATAGATTGAAAAATTGGCATTCACAGAATTTTCTGAAAATCCCTAGTTTTTCCTGCTTTTCGTCGATTTCTGAAAGACACCCATTTGTTGCCCGTTTTTGCACTGACAACATGAAAAAACAGGTGTCATTTAGAAATCGCTAATAGCTGAAAAGCTTTGTATTTTCAAAAAATTCTGCGAATGCGAAGTTGTGAAGTCTGTTTTACACTCTATAAAATGTTCAAATTGATCGGAAACTTAACAGACGGGCTTCAGACTTTTAAAAATGTGCCAAAACGGCCGAAAATTAACTGAAAAATAGATTTTTGAGACCTGTAATAGAAGGGCCCTCACACTGGCAAGTTTGAGAGCTCAGTTATCTCGGTTTCTATGAAAGTCATAAAAAATGTGTGAACTGATAAAATGTTTATGATGATACGATAAAAAATTTGTCAGTTGACAACTTTTTKATATCTGTGGCAGGCATTGAGATAAGTTAGCTAAAAGTCAAAAGTTACGGGTCCCTTCTATTACAGTTTTTACGGTATCATATGGACCGGTACTGTATTACGGTTTGGGATTTGATTATATGACCAATTAAAGGCTGGTAGACCGTATCAAGTCAGAAAGAAGTTCCCAGTGACTTCAAAATGAAACAGTTTTGTGACGAAAGCCACATCAAAAATGGAACGAAACAAAAATTATTTTTTCAGGCTGGTATGCAAAAATCTGAGCTGTGGAAGAGAAAATCTGGTTGCCGCGACCACGACTCAACTACCGTCGTTATCAAAAAAATTTCTCAACTTTCGTCCGTTTTCCGGCAATTTTTTAGGTTTAGAAAAATTTCATTCTCCGACTTGTTTGGAGGTTTTCAACACATCGTTACCCTTCAGTTCAACTAGTAGAAAAACTGAAAATTTCAAGTTTTTTTCTAGGATGTTATGACTCTCCTTGTTCTTTTTCATGAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTGAGAGATCAAAACATTAGG</pcr_primer_p1>
		<pcr_primer_p2>CCCAAACCGTAATACAGTACC</pcr_primer_p2>
		<pcr_amplicon_size>713</pcr_amplicon_size>
		<canonical_amplicon>TGATATCTGTGGCAGGCATTGAGATAAGTTAGCTAAAAGTCAAAAGTTACGGGTCCCTTCTATTACAGTTTTTACGGTATCATATGGACCGGTACTGTATTACGGTTTGGG</canonical_amplicon>
		<polymorphic_amplicon>TKATATCTGTGGCAGGCATTGAGATAAGTTAGCTAAAAGTCAAAAGTTACGGGTCCCTTCTATTACAGTTTTTACGGTATCATATGGACCGGTACTGTATTACGGTTTGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34913</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>44494</contig_pos>
        <strand></strand>
        <context>tctattacag[T/G]ttttacggtA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTGAGATAAGTTAGCTAAAAGTCAAAAGTTACGGGTCCCTTCTATTACAG</left_flank>
        <right_flank>TTTTACGGTATCATATGGACCGGTACTGTATTACGGTTTGGGATTTGATT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCATTCACAGAATTTTCTGAAAATCCCTAGTTTTTCCTGCTTTTCGTCGATTTCTGAAAGACACCCATTTGTTGCCCGTTTTTGCACTGACAACATGAAAAAACAGGTGTCATTTAGAAATCGCTAATAGCTGAAAAGCTTTGTATTTTCAAAAAATTCTGCGAATGCGAAGTTGTGAAGTCTGTTTTACACTCTATAAAATGTTCAAATTGATCGGAAACTTAACAGACGGGCTTCAGACTTTTAAAAATGTGCCAAAACGGCCGAAAATTAACTGAAAAATAGATTTTTGAGACCTGTAATAGAAGGGCCCTCACACTGGCAAGTTTGAGAGCTCAGTTATCTCGGTTTCTATGAAAGTCATAAAAAATGTGTGAACTGATAAAATGTTTATGATGATACGATAAAAAATTTGTCAGTTGACAACTTTTTGATATCTGTGGCAGGCATTGAGATAAGTTAGCTAAAAGTCAAAAGTTACGGGTCCCTTCTATTACAGTTTTTACGGTATCATATGGACCGGTACTGTATTACGGTTTGGGATTTGATTATATGACCAATTAAAGGCTGGTAGACCGTATCAAGTCAGAAAGAAGTTCCCAGTGACTTCAAAATGAAACAGTTTTGTGACGAAAGCCACATCAAAAATGGAACGAAACAAAAATTATTTTTTCAGGCTGGTATGCAAAAATCTGAGCTGTGGAAGAGAAAATCTGGTTGCCGCGACCACGACTCAACTACCGTCGTTATCAAAAAAATTTCTCAACTTTCGTCCGTTTTCCGGCAATTTTTTAGGTTTAGAAAAATTTCATTCTCCGACTTGTTTGGAGGTTTTCAACACATCGTTACCCTTCAGTTCAACTAGTAGAAAAACTGAAAATTTCAAGTTTTTTTCTAGGATGTTATGACTCTCCTTGTTCTTTTTCATGAATCTGAAAGTGAATTCAAAAAATAACACAAAATATGAAACCACCAAGAAAAAATTCTGAACAACAACCAC</canonical>
            <polymorphic>GCATTCACAGAATTTTCTGAAAATCCCTAGTTTTTCCTGCTTTTCGTCGATTTCTGAAAGACACCCATTTGTTGCCCGTTTTTGCACTGACAACATGAAAAAACAGGTGTCATTTAGAAATCGCTAATAGCTGAAAAGCTTTGTATTTTCAAAAAATTCTGCGAATGCGAAGTTGTGAAGTCTGTTTTACACTCTATAAAATGTTCAAATTGATCGGAAACTTAACAGACGGGCTTCAGACTTTTAAAAATGTGCCAAAACGGCCGAAAATTAACTGAAAAATAGATTTTTGAGACCTGTAATAGAAGGGCCCTCACACTGGCAAGTTTGAGAGCTCAGTTATCTCGGTTTCTATGAAAGTCATAAAAAATGTGTGAACTGATAAAATGTTTATGATGATACGATAAAAAATTTGTCAGTTGACAACTTTTTGATATCTGTGGCAGGCATTGAGATAAGTTAGCTAAAAGTCAAAAGTTACGGGTCCCTTCTATTACAGKTTTTACGGTATCATATGGACCGGTACTGTATTACGGTTTGGGATTTGATTATATGACCAATTAAAGGCTGGTAGACCGTATCAAGTCAGAAAGAAGTTCCCAGTGACTTCAAAATGAAACAGTTTTGTGACGAAAGCCACATCAAAAATGGAACGAAACAAAAATTATTTTTTCAGGCTGGTATGCAAAAATCTGAGCTGTGGAAGAGAAAATCTGGTTGCCGCGACCACGACTCAACTACCGTCGTTATCAAAAAAATTTCTCAACTTTCGTCCGTTTTCCGGCAATTTTTTAGGTTTAGAAAAATTTCATTCTCCGACTTGTTTGGAGGTTTTCAACACATCGTTACCCTTCAGTTCAACTAGTAGAAAAACTGAAAATTTCAAGTTTTTTTCTAGGATGTTATGACTCTCCTTGTTCTTTTTCATGAATCTGAAAGTGAATTCAAAAAATAACACAAAATATGAAACCACCAAGAAAAAATTCTGAACAACAACCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>498 258 121 44 42 20 9 8</canonical_bands>
                <polymorphic_bands>507 258 121 44 42 20 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAAAACATTAGGGTTTGTTG</pcr_primer_p1>
		<pcr_primer_p2>CAGCCTTTAATTGGTCATATAAT</pcr_primer_p2>
		<pcr_amplicon_size>732</pcr_amplicon_size>
		<canonical_amplicon>GTTTTTACGGTATCATATGGACCGGTACTGTATTACGGTTTGGGATTTGATTATATGACCAATTAAAGGCTG</canonical_amplicon>
		<polymorphic_amplicon>GKTTTTACGGTATCATATGGACCGGTACTGTATTACGGTTTGGGATTTGATTATATGACCAATTAAAGGCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34914</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>44515</contig_pos>
        <strand></strand>
        <context>TCATATGGAC[C/A]GGTACTGTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TCAAAAGTTACGGGTCCCTTCTATTACAGTTTTTACGGTATCATATGGAC</left_flank>
        <right_flank>GGTACTGTATTACGGTTTGGGATTTGATTATATGACCAATTAAAGGCTGG</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCCCTAGTTTTTCCTGCTTTTCGTCGATTTCTGAAAGACACCCATTTGTTGCCCGTTTTTGCACTGACAACATGAAAAAACAGGTGTCATTTAGAAATCGCTAATAGCTGAAAAGCTTTGTATTTTCAAAAAATTCTGCGAATGCGAAGTTGTGAAGTCTGTTTTACACTCTATAAAATGTTCAAATTGATCGGAAACTTAACAGACGGGCTTCAGACTTTTAAAAATGTGCCAAAACGGCCGAAAATTAACTGAAAAATAGATTTTTGAGACCTGTAATAGAAGGGCCCTCACACTGGCAAGTTTGAGAGCTCAGTTATCTCGGTTTCTATGAAAGTCATAAAAAATGTGTGAACTGATAAAATGTTTATGATGATACGATAAAAAATTTGTCAGTTGACAACTTTTTGATATCTGTGGCAGGCATTGAGATAAGTTAGCTAAAAGTCAAAAGTTACGGGTCCCTTCTATTACAGTTTTTACGGTATCATATGGACCGGTACTGTATTACGGTTTGGGATTTGATTATATGACCAATTAAAGGCTGGTAGACCGTATCAAGTCAGAAAGAAGTTCCCAGTGACTTCAAAATGAAACAGTTTTGTGACGAAAGCCACATCAAAAATGGAACGAAACAAAAATTATTTTTTCAGGCTGGTATGCAAAAATCTGAGCTGTGGAAGAGAAAATCTGGTTGCCGCGACCACGACTCAACTACCGTCGTTATCAAAAAAATTTCTCAACTTTCGTCCGTTTTCCGGCAATTTTTTAGGTTTAGAAAAATTTCATTCTCCGACTTGTTTGGAGGTTTTCAACACATCGTTACCCTTCAGTTCAACTAGTAGAAAAACTGAAAATTTCAAGTTTTTTTCTAGGATGTTATGACTCTCCTTGTTCTTTTTCATGAATCTGAAAGTGAATTCAAAAAATAACACAAAATATGAAACCACCAAGAAAAAATTCTGAACAACAACCACCTCTTCGTATCCAGACAGAAT</canonical>
            <polymorphic>AATCCCTAGTTTTTCCTGCTTTTCGTCGATTTCTGAAAGACACCCATTTGTTGCCCGTTTTTGCACTGACAACATGAAAAAACAGGTGTCATTTAGAAATCGCTAATAGCTGAAAAGCTTTGTATTTTCAAAAAATTCTGCGAATGCGAAGTTGTGAAGTCTGTTTTACACTCTATAAAATGTTCAAATTGATCGGAAACTTAACAGACGGGCTTCAGACTTTTAAAAATGTGCCAAAACGGCCGAAAATTAACTGAAAAATAGATTTTTGAGACCTGTAATAGAAGGGCCCTCACACTGGCAAGTTTGAGAGCTCAGTTATCTCGGTTTCTATGAAAGTCATAAAAAATGTGTGAACTGATAAAATGTTTATGATGATACGATAAAAAATTTGTCAGTTGACAACTTTTTGATATCTGTGGCAGGCATTGAGATAAGTTAGCTAAAAGTCAAAAGTTACGGGTCCCTTCTATTACAGTTTTTACGGTATCATATGGACMGGTACTGTATTACGGTTTGGGATTTGATTATATGACCAATTAAAGGCTGGTAGACCGTATCAAGTCAGAAAGAAGTTCCCAGTGACTTCAAAATGAAACAGTTTTGTGACGAAAGCCACATCAAAAATGGAACGAAACAAAAATTATTTTTTCAGGCTGGTATGCAAAAATCTGAGCTGTGGAAGAGAAAATCTGGTTGCCGCGACCACGACTCAACTACCGTCGTTATCAAAAAAATTTCTCAACTTTCGTCCGTTTTCCGGCAATTTTTTAGGTTTAGAAAAATTTCATTCTCCGACTTGTTTGGAGGTTTTCAACACATCGTTACCCTTCAGTTCAACTAGTAGAAAAACTGAAAATTTCAAGTTTTTTTCTAGGATGTTATGACTCTCCTTGTTCTTTTTCATGAATCTGAAAGTGAATTCAAAAAATAACACAAAATATGAAACCACCAAGAAAAAATTCTGAACAACAACCACCTCTTCGTATCCAGACAGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>504 462 34</canonical_bands>
                <polymorphic_bands>538 462</polymorphic_bands>
            </assay>
            <assay>
                <site>ACCGGT</site>
                <isoschizomers>
                    <enzyme>AgeI</enzyme>
                    <enzyme>AsiAI</enzyme>
                    <enzyme>BshTI</enzyme>
                    <enzyme>CspAI</enzyme>
                    <enzyme>PinAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 261 240</canonical_bands>
                <polymorphic_bands>760 240</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>501 290 175 34</canonical_bands>
                <polymorphic_bands>535 290 175</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAAAACATTAGGGTTTGTTG</pcr_primer_p1>
		<pcr_primer_p2>TACCAGCCTTTAATTGGTCAT</pcr_primer_p2>
		<pcr_amplicon_size>735</pcr_amplicon_size>
		<canonical_amplicon>CCGGTACTGTATTACGGTTTGGGATTTGATTATATGACCAATTAAAGGCTGGTA</canonical_amplicon>
		<polymorphic_amplicon>CMGGTACTGTATTACGGTTTGGGATTTGATTATATGACCAATTAAAGGCTGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34915</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>73666</contig_pos>
        <strand></strand>
        <context>GCTACTATGT[A/G]ATAGAACCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTCAATTATGATGTGATAGAAACAAAAAATCAATTTTAGCTACTATGT</left_flank>
        <right_flank>ATAGAACCAAAAATTGTTCAATTTCAATCGCCGTTTAAGTTTCAAGTGGT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACAACTACCGTAATTATAAAAATTTGATTTTCCAGATTTATTTTCTTGATTTTCGTTTTCAGTTACTATCAAAATTTTCATTTTGGTTTGGGGAAAAACGACAGAAAACTCGACGGCTAAAAGCAGTGAAAAAACGAGAAAATAAATCCTGAAGATTAAAATATTTTAGGCTACGGTAGTTGTCGTTGTGGGACCGTCGGCCACAGCCACCGGTATTTTTCGTCTACAGCTTCATGTTTTTAACCAGAATACGCTGCTAATATACTAATTTTGATAGTGTCAAACGAAGTCTAAAAATATCCAACTGATAACCATTCCTTCGTTTTCAGTGATAAGCTGACAGAATCCAAAATAGAACGCGTATCAAAGAAAGGTTTGGTCTCTCTGAATGACCCAAAATAGGCGAGTTTCGAAACTAAGTGATGATGACAGTGTGAATAATGGAGGAAGTCAATTATGATGTGATAGAAACAAAAAATCAATTTTAGCTACTATGTAATAGAACCAAAAATTGTTCAATTTCAATCGCCGTTTAAGTTTCAAGTGGTGATTAAGACGAAGGAATTATTAAACACGAAAAAATTGAATTTCCTGGAAAATCACGAAAGAGAAGATCCTGGAAAGAGGTTTTCATTGAAAATGGAGAGAATGAAAGAAAACACACTTCGTTGAGAAGAGCAAGTTTTCGGGATAGCAGATTATCCCGACACTAATCTGCGTTTCGTTGAATTGTGCATCAAATTCTGAGAAAAATAACTCGAAAATCAACTATGTAGTCACTTATTTTCCAAGAATCAATTACCAGTAGCAAAGTGTTCAAAAGTGCTAGAAACGAATGAGGCGAAAATGAAATTGTTGGTGGTGCGAATGGCATCCATTTCCCGTTGCGGAAGACTTTTGTTTGCAAAGAAGGGAATCCAAAAATAGACAAAACGACGACGAAGGAGACGAGGGAGAGAGGGAGAGAACCAATAAATGAAAAAGGCATTGGCTATATA</canonical>
            <polymorphic>CGACAACTACCGTAATTATAAAAATTTGATTTTCCAGATTTATTTTCTTGATTTTCGTTTTCAGTTACTATCAAAATTTTCATTTTGGTTTGGGGAAAAACGACAGAAAACTCGACGGCTAAAAGCAGTGAAAAAACGAGAAAATAAATCCTGAAGATTAAAATATTTTAGGCTACGGTAGTTGTCGTTGTGGGACCGTCGGCCACAGCCACCGGTATTTTTCGTCTACAGCTTCATGTTTTTAACCAGAATACGCTGCTAATATACTAATTTTGATAGTGTCAAACGAAGTCTAAAAATATCCAACTGATAACCATTCCTTCGTTTTCAGTGATAAGCTGACAGAATCCAAAATAGAACGCGTATCAAAGAAAGGTTTGGTCTCTCTGAATGACCCAAAATAGGCGAGTTTCGAAACTAAGTGATGATGACAGTGTGAATAATGGAGGAAGTCAATTATGATGTGATAGAAACAAAAAATCAATTTTAGCTACTATGTRATAGAACCAAAAATTGTTCAATTTCAATCGCCGTTTAAGTTTCAAGTGGTGATTAAGACGAAGGAATTATTAAACACGAAAAAATTGAATTTCCTGGAAAATCACGAAAGAGAAGATCCTGGAAAGAGGTTTTCATTGAAAATGGAGAGAATGAAAGAAAACACACTTCGTTGAGAAGAGCAAGTTTTCGGGATAGCAGATTATCCCGACACTAATCTGCGTTTCGTTGAATTGTGCATCAAATTCTGAGAAAAATAACTCGAAAATCAACTATGTAGTCACTTATTTTCCAAGAATCAATTACCAGTAGCAAAGTGTTCAAAAGTGCTAGAAACGAATGAGGCGAAAATGAAATTGTTGGTGGTGCGAATGGCATCCATTTCCCGTTGCGGAAGACTTTTGTTTGCAAAGAAGGGAATCCAAAAATAGACAAAACGACGACGAAGGAGACGAGGGAGAGAGGGAGAGAACCAATAAATGAAAAAGGCATTGGCTATATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAAACTAAGTGATGATGACAGT</pcr_primer_p1>
		<pcr_primer_p2>GTTTTCTTTCATTCTCTCCATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGAAACTAAGTGATGATGACAGTGTGAATAATGGAGGAAGTCAATTATGATGTGATAGAAACAAAAAATCAATTTTAGCTACTATGTAATAGAACCAAAAATTGTTCAATTTCAATCGCCGTTTAAGTTTCAAGTGGTGATTAAGACGAAGGAATTATTAAACACGAAAAAATTGAATTTCCTGGAAAATCACGAAAGAGAAGATCCTGGAAAGAGGTTTTCATTGAAAATGGAGAGAATGAAAGAAAAC</canonical_amplicon>
		<polymorphic_amplicon>CGAAACTAAGTGATGATGACAGTGTGAATAATGGAGGAAGTCAATTATGATGTGATAGAAACAAAAAATCAATTTTAGCTACTATGTRATAGAACCAAAAATTGTTCAATTTCAATCGCCGTTTAAGTTTCAAGTGGTGATTAAGACGAAGGAATTATTAAACACGAAAAAATTGAATTTCCTGGAAAATCACGAAAGAGAAGATCCTGGAAAGAGGTTTTCATTGAAAATGGAGAGAATGAAAGAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34916</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>73722</contig_pos>
        <strand></strand>
        <context>GTGGTGATTA[A/T]GACGAAGGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCAAAAATTGTTCAATTTCAATCGCCGTTTAAGTTTCAAGTGGTGATTA</left_flank>
        <right_flank>GACGAAGGAATTATTAAACACGAAAAAATTGAATTTCCTGGAAAATCACG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTCAGTTACTATCAAAATTTTCATTTTGGTTTGGGGAAAAACGACAGAAAACTCGACGGCTAAAAGCAGTGAAAAAACGAGAAAATAAATCCTGAAGATTAAAATATTTTAGGCTACGGTAGTTGTCGTTGTGGGACCGTCGGCCACAGCCACCGGTATTTTTCGTCTACAGCTTCATGTTTTTAACCAGAATACGCTGCTAATATACTAATTTTGATAGTGTCAAACGAAGTCTAAAAATATCCAACTGATAACCATTCCTTCGTTTTCAGTGATAAGCTGACAGAATCCAAAATAGAACGCGTATCAAAGAAAGGTTTGGTCTCTCTGAATGACCCAAAATAGGCGAGTTTCGAAACTAAGTGATGATGACAGTGTGAATAATGGAGGAAGTCAATTATGATGTGATAGAAACAAAAAATCAATTTTAGCTACTATGTAATAGAACCAAAAATTGTTCAATTTCAATCGCCGTTTAAGTTTCAAGTGGTGATTAAGACGAAGGAATTATTAAACACGAAAAAATTGAATTTCCTGGAAAATCACGAAAGAGAAGATCCTGGAAAGAGGTTTTCATTGAAAATGGAGAGAATGAAAGAAAACACACTTCGTTGAGAAGAGCAAGTTTTCGGGATAGCAGATTATCCCGACACTAATCTGCGTTTCGTTGAATTGTGCATCAAATTCTGAGAAAAATAACTCGAAAATCAACTATGTAGTCACTTATTTTCCAAGAATCAATTACCAGTAGCAAAGTGTTCAAAAGTGCTAGAAACGAATGAGGCGAAAATGAAATTGTTGGTGGTGCGAATGGCATCCATTTCCCGTTGCGGAAGACTTTTGTTTGCAAAGAAGGGAATCCAAAAATAGACAAAACGACGACGAAGGAGACGAGGGAGAGAGGGAGAGAACCAATAAATGAAAAAGGCATTGGCTATATAGCAGCAAACCGAACTGCCGAGAAGAAGAATTATGTTTTGTATATGGATGGATTCTT</canonical>
            <polymorphic>GTTTTCAGTTACTATCAAAATTTTCATTTTGGTTTGGGGAAAAACGACAGAAAACTCGACGGCTAAAAGCAGTGAAAAAACGAGAAAATAAATCCTGAAGATTAAAATATTTTAGGCTACGGTAGTTGTCGTTGTGGGACCGTCGGCCACAGCCACCGGTATTTTTCGTCTACAGCTTCATGTTTTTAACCAGAATACGCTGCTAATATACTAATTTTGATAGTGTCAAACGAAGTCTAAAAATATCCAACTGATAACCATTCCTTCGTTTTCAGTGATAAGCTGACAGAATCCAAAATAGAACGCGTATCAAAGAAAGGTTTGGTCTCTCTGAATGACCCAAAATAGGCGAGTTTCGAAACTAAGTGATGATGACAGTGTGAATAATGGAGGAAGTCAATTATGATGTGATAGAAACAAAAAATCAATTTTAGCTACTATGTAATAGAACCAAAAATTGTTCAATTTCAATCGCCGTTTAAGTTTCAAGTGGTGATTAWGACGAAGGAATTATTAAACACGAAAAAATTGAATTTCCTGGAAAATCACGAAAGAGAAGATCCTGGAAAGAGGTTTTCATTGAAAATGGAGAGAATGAAAGAAAACACACTTCGTTGAGAAGAGCAAGTTTTCGGGATAGCAGATTATCCCGACACTAATCTGCGTTTCGTTGAATTGTGCATCAAATTCTGAGAAAAATAACTCGAAAATCAACTATGTAGTCACTTATTTTCCAAGAATCAATTACCAGTAGCAAAGTGTTCAAAAGTGCTAGAAACGAATGAGGCGAAAATGAAATTGTTGGTGGTGCGAATGGCATCCATTTCCCGTTGCGGAAGACTTTTGTTTGCAAAGAAGGGAATCCAAAAATAGACAAAACGACGACGAAGGAGACGAGGGAGAGAGGGAGAGAACCAATAAATGAAAAAGGCATTGGCTATATAGCAGCAAACCGAACTGCCGAGAAGAAGAATTATGTTTTGTATATGGATGGATTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>486 293 102 84 18 17</canonical_bands>
                <polymorphic_bands>486 293 102 84 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAAACTAAGTGATGATGACAGT</pcr_primer_p1>
		<pcr_primer_p2>GTTTTCTTTCATTCTCTCCATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGAAACTAAGTGATGATGACAGTGTGAATAATGGAGGAAGTCAATTATGATGTGATAGAAACAAAAAATCAATTTTAGCTACTATGTAATAGAACCAAAAATTGTTCAATTTCAATCGCCGTTTAAGTTTCAAGTGGTGATTAAGACGAAGGAATTATTAAACACGAAAAAATTGAATTTCCTGGAAAATCACGAAAGAGAAGATCCTGGAAAGAGGTTTTCATTGAAAATGGAGAGAATGAAAGAAAAC</canonical_amplicon>
		<polymorphic_amplicon>CGAAACTAAGTGATGATGACAGTGTGAATAATGGAGGAAGTCAATTATGATGTGATAGAAACAAAAAATCAATTTTAGCTACTATGTAATAGAACCAAAAATTGTTCAATTTCAATCGCCGTTTAAGTTTCAAGTGGTGATTAWGACGAAGGAATTATTAAACACGAAAAAATTGAATTTCCTGGAAAATCACGAAAGAGAAGATCCTGGAAAGAGGTTTTCATTGAAAATGGAGAGAATGAAAGAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34917</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>73738</contig_pos>
        <strand></strand>
        <context>AGGAATTATT[A/C]AACACGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCAATCGCCGTTTAAGTTTCAAGTGGTGATTAAGACGAAGGAATTATT</left_flank>
        <right_flank>AACACGAAAAAATTGAATTTCCTGGAAAATCACGAAAGAGAAGATCCTGG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATTTTCATTTTGGTTTGGGGAAAAACGACAGAAAACTCGACGGCTAAAAGCAGTGAAAAAACGAGAAAATAAATCCTGAAGATTAAAATATTTTAGGCTACGGTAGTTGTCGTTGTGGGACCGTCGGCCACAGCCACCGGTATTTTTCGTCTACAGCTTCATGTTTTTAACCAGAATACGCTGCTAATATACTAATTTTGATAGTGTCAAACGAAGTCTAAAAATATCCAACTGATAACCATTCCTTCGTTTTCAGTGATAAGCTGACAGAATCCAAAATAGAACGCGTATCAAAGAAAGGTTTGGTCTCTCTGAATGACCCAAAATAGGCGAGTTTCGAAACTAAGTGATGATGACAGTGTGAATAATGGAGGAAGTCAATTATGATGTGATAGAAACAAAAAATCAATTTTAGCTACTATGTAATAGAACCAAAAATTGTTCAATTTCAATCGCCGTTTAAGTTTCAAGTGGTGATTAAGACGAAGGAATTATTAAACACGAAAAAATTGAATTTCCTGGAAAATCACGAAAGAGAAGATCCTGGAAAGAGGTTTTCATTGAAAATGGAGAGAATGAAAGAAAACACACTTCGTTGAGAAGAGCAAGTTTTCGGGATAGCAGATTATCCCGACACTAATCTGCGTTTCGTTGAATTGTGCATCAAATTCTGAGAAAAATAACTCGAAAATCAACTATGTAGTCACTTATTTTCCAAGAATCAATTACCAGTAGCAAAGTGTTCAAAAGTGCTAGAAACGAATGAGGCGAAAATGAAATTGTTGGTGGTGCGAATGGCATCCATTTCCCGTTGCGGAAGACTTTTGTTTGCAAAGAAGGGAATCCAAAAATAGACAAAACGACGACGAAGGAGACGAGGGAGAGAGGGAGAGAACCAATAAATGAAAAAGGCATTGGCTATATAGCAGCAAACCGAACTGCCGAGAAGAAGAATTATGTTTTGTATATGGATGGATTCTTGCAGAGAAAATTTGAG</canonical>
            <polymorphic>AAAATTTTCATTTTGGTTTGGGGAAAAACGACAGAAAACTCGACGGCTAAAAGCAGTGAAAAAACGAGAAAATAAATCCTGAAGATTAAAATATTTTAGGCTACGGTAGTTGTCGTTGTGGGACCGTCGGCCACAGCCACCGGTATTTTTCGTCTACAGCTTCATGTTTTTAACCAGAATACGCTGCTAATATACTAATTTTGATAGTGTCAAACGAAGTCTAAAAATATCCAACTGATAACCATTCCTTCGTTTTCAGTGATAAGCTGACAGAATCCAAAATAGAACGCGTATCAAAGAAAGGTTTGGTCTCTCTGAATGACCCAAAATAGGCGAGTTTCGAAACTAAGTGATGATGACAGTGTGAATAATGGAGGAAGTCAATTATGATGTGATAGAAACAAAAAATCAATTTTAGCTACTATGTAATAGAACCAAAAATTGTTCAATTTCAATCGCCGTTTAAGTTTCAAGTGGTGATTAAGACGAAGGAATTATTMAACACGAAAAAATTGAATTTCCTGGAAAATCACGAAAGAGAAGATCCTGGAAAGAGGTTTTCATTGAAAATGGAGAGAATGAAAGAAAACACACTTCGTTGAGAAGAGCAAGTTTTCGGGATAGCAGATTATCCCGACACTAATCTGCGTTTCGTTGAATTGTGCATCAAATTCTGAGAAAAATAACTCGAAAATCAACTATGTAGTCACTTATTTTCCAAGAATCAATTACCAGTAGCAAAGTGTTCAAAAGTGCTAGAAACGAATGAGGCGAAAATGAAATTGTTGGTGGTGCGAATGGCATCCATTTCCCGTTGCGGAAGACTTTTGTTTGCAAAGAAGGGAATCCAAAAATAGACAAAACGACGACGAAGGAGACGAGGGAGAGAGGGAGAGAACCAATAAATGAAAAAGGCATTGGCTATATAGCAGCAAACCGAACTGCCGAGAAGAAGAATTATGTTTTGTATATGGATGGATTCTTGCAGAGAAAATTTGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 293 86 84 18 17</canonical_bands>
                <polymorphic_bands>519 293 86 84 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAAACTAAGTGATGATGACAGT</pcr_primer_p1>
		<pcr_primer_p2>GTTTTCTTTCATTCTCTCCATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGAAACTAAGTGATGATGACAGTGTGAATAATGGAGGAAGTCAATTATGATGTGATAGAAACAAAAAATCAATTTTAGCTACTATGTAATAGAACCAAAAATTGTTCAATTTCAATCGCCGTTTAAGTTTCAAGTGGTGATTAAGACGAAGGAATTATTAAACACGAAAAAATTGAATTTCCTGGAAAATCACGAAAGAGAAGATCCTGGAAAGAGGTTTTCATTGAAAATGGAGAGAATGAAAGAAAAC</canonical_amplicon>
		<polymorphic_amplicon>CGAAACTAAGTGATGATGACAGTGTGAATAATGGAGGAAGTCAATTATGATGTGATAGAAACAAAAAATCAATTTTAGCTACTATGTAATAGAACCAAAAATTGTTCAATTTCAATCGCCGTTTAAGTTTCAAGTGGTGATTAAGACGAAGGAATTATTMAACACGAAAAAATTGAATTTCCTGGAAAATCACGAAAGAGAAGATCCTGGAAAGAGGTTTTCATTGAAAATGGAGAGAATGAAAGAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34918</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>73832</contig_pos>
        <strand></strand>
        <context>AGAAAACACA[C/T]TTCGTTGAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCCTGGAAAGAGGTTTTCATTGAAAATGGAGAGAATGAAAGAAAACACA</left_flank>
        <right_flank>TTCGTTGAGAAGAGCAAGTTTTCGGGATAGCAGATTATCCCGACACTAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAGGCTACGGTAGTTGTCGTTGTGGGACCGTCGGCCACAGCCACCGGTATTTTTCGTCTACAGCTTCATGTTTTTAACCAGAATACGCTGCTAATATACTAATTTTGATAGTGTCAAACGAAGTCTAAAAATATCCAACTGATAACCATTCCTTCGTTTTCAGTGATAAGCTGACAGAATCCAAAATAGAACGCGTATCAAAGAAAGGTTTGGTCTCTCTGAATGACCCAAAATAGGCGAGTTTCGAAACTAAGTGATGATGACAGTGTGAATAATGGAGGAAGTCAATTATGATGTGATAGAAACAAAAAATCAATTTTAGCTACTATGTAATAGAACCAAAAATTGTTCAATTTCAATCGCCGTTTAAGTTTCAAGTGGTGATTAAGACGAAGGAATTATTAAACACGAAAAAATTGAATTTCCTGGAAAATCACGAAAGAGAAGATCCTGGAAAGAGGTTTTCATTGAAAATGGAGAGAATGAAAGAAAACACACTTCGTTGAGAAGAGCAAGTTTTCGGGATAGCAGATTATCCCGACACTAATCTGCGTTTCGTTGAATTGTGCATCAAATTCTGAGAAAAATAACTCGAAAATCAACTATGTAGTCACTTATTTTCCAAGAATCAATTACCAGTAGCAAAGTGTTCAAAAGTGCTAGAAACGAATGAGGCGAAAATGAAATTGTTGGTGGTGCGAATGGCATCCATTTCCCGTTGCGGAAGACTTTTGTTTGCAAAGAAGGGAATCCAAAAATAGACAAAACGACGACGAAGGAGACGAGGGAGAGAGGGAGAGAACCAATAAATGAAAAAGGCATTGGCTATATAGCAGCAAACCGAACTGCCGAGAAGAAGAATTATGTTTTGTATATGGATGGATTCTTGCAGAGAAAATTTGAGGATATAGCAGAAAAACAGAAGAAGCACAACAACAGCGACAACGAATACACTACTAACTGCTACTGCTACTGGTTGAAGTGTGTGCGTTTGTTGG</canonical>
            <polymorphic>TTTAGGCTACGGTAGTTGTCGTTGTGGGACCGTCGGCCACAGCCACCGGTATTTTTCGTCTACAGCTTCATGTTTTTAACCAGAATACGCTGCTAATATACTAATTTTGATAGTGTCAAACGAAGTCTAAAAATATCCAACTGATAACCATTCCTTCGTTTTCAGTGATAAGCTGACAGAATCCAAAATAGAACGCGTATCAAAGAAAGGTTTGGTCTCTCTGAATGACCCAAAATAGGCGAGTTTCGAAACTAAGTGATGATGACAGTGTGAATAATGGAGGAAGTCAATTATGATGTGATAGAAACAAAAAATCAATTTTAGCTACTATGTAATAGAACCAAAAATTGTTCAATTTCAATCGCCGTTTAAGTTTCAAGTGGTGATTAAGACGAAGGAATTATTAAACACGAAAAAATTGAATTTCCTGGAAAATCACGAAAGAGAAGATCCTGGAAAGAGGTTTTCATTGAAAATGGAGAGAATGAAAGAAAACACAYTTCGTTGAGAAGAGCAAGTTTTCGGGATAGCAGATTATCCCGACACTAATCTGCGTTTCGTTGAATTGTGCATCAAATTCTGAGAAAAATAACTCGAAAATCAACTATGTAGTCACTTATTTTCCAAGAATCAATTACCAGTAGCAAAGTGTTCAAAAGTGCTAGAAACGAATGAGGCGAAAATGAAATTGTTGGTGGTGCGAATGGCATCCATTTCCCGTTGCGGAAGACTTTTGTTTGCAAAGAAGGGAATCCAAAAATAGACAAAACGACGACGAAGGAGACGAGGGAGAGAGGGAGAGAACCAATAAATGAAAAAGGCATTGGCTATATAGCAGCAAACCGAACTGCCGAGAAGAAGAATTATGTTTTGTATATGGATGGATTCTTGCAGAGAAAATTTGAGGATATAGCAGAAAAACAGAAGAAGCACAACAACAGCGACAACGAATACACTACTAACTGCTACTGCTACTGGTTGAAGTGTGTGCGTTTGTTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>232 91 82 70 59 52 46 45 36 36 31 28 28 26 25 25 23 13 12 10 10 6 3 3 2 2 2 2</canonical_bands>
                <polymorphic_bands>232 91 82 70 59 52 48 45 36 36 31 28 28 26 25 25 23 13 12 10 10 6 3 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTTTAAGTTTCAAGTGGTGAT</pcr_primer_p1>
		<pcr_primer_p2>TTGATTTTCGAGTTATTTTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CGTTTAAGTTTCAAGTGGTGATTAAGACGAAGGAATTATTAAACACGAAAAAATTGAATTTCCTGGAAAATCACGAAAGAGAAGATCCTGGAAAGAGGTTTTCATTGAAAATGGAGAGAATGAAAGAAAACACACTTCGTTGAGAAGAGCAAGTTTTCGGGATAGCAGATTATCCCGACACTAATCTGCGTTTCGTTGAATTGTGCATCAAATTCTGAGAAAAATAACTCGAAAATCAA</canonical_amplicon>
		<polymorphic_amplicon>CGTTTAAGTTTCAAGTGGTGATTAAGACGAAGGAATTATTAAACACGAAAAAATTGAATTTCCTGGAAAATCACGAAAGAGAAGATCCTGGAAAGAGGTTTTCATTGAAAATGGAGAGAATGAAAGAAAACACAYTTCGTTGAGAAGAGCAAGTTTTCGGGATAGCAGATTATCCCGACACTAATCTGCGTTTCGTTGAATTGTGCATCAAATTCTGAGAAAAATAACTCGAAAATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34919</snp_id>
        <super_contig>c009600860.Contig1</super_contig>
        <contig_pos>73851</contig_pos>
        <strand></strand>
        <context>GAAGAGCAAG[T/A]TTTCGGGATA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATTGAAAATGGAGAGAATGAAAGAAAACACACTTCGTTGAGAAGAGCAAG</left_flank>
        <right_flank>TTTCGGGATAGCAGATTATCCCGACACTAATCTGCGTTTCGTTGAATTGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTTGTGGGACCGTCGGCCACAGCCACCGGTATTTTTCGTCTACAGCTTCATGTTTTTAACCAGAATACGCTGCTAATATACTAATTTTGATAGTGTCAAACGAAGTCTAAAAATATCCAACTGATAACCATTCCTTCGTTTTCAGTGATAAGCTGACAGAATCCAAAATAGAACGCGTATCAAAGAAAGGTTTGGTCTCTCTGAATGACCCAAAATAGGCGAGTTTCGAAACTAAGTGATGATGACAGTGTGAATAATGGAGGAAGTCAATTATGATGTGATAGAAACAAAAAATCAATTTTAGCTACTATGTAATAGAACCAAAAATTGTTCAATTTCAATCGCCGTTTAAGTTTCAAGTGGTGATTAAGACGAAGGAATTATTAAACACGAAAAAATTGAATTTCCTGGAAAATCACGAAAGAGAAGATCCTGGAAAGAGGTTTTCATTGAAAATGGAGAGAATGAAAGAAAACACACTTCGTTGAGAAGAGCAAGTTTTCGGGATAGCAGATTATCCCGACACTAATCTGCGTTTCGTTGAATTGTGCATCAAATTCTGAGAAAAATAACTCGAAAATCAACTATGTAGTCACTTATTTTCCAAGAATCAATTACCAGTAGCAAAGTGTTCAAAAGTGCTAGAAACGAATGAGGCGAAAATGAAATTGTTGGTGGTGCGAATGGCATCCATTTCCCGTTGCGGAAGACTTTTGTTTGCAAAGAAGGGAATCCAAAAATAGACAAAACGACGACGAAGGAGACGAGGGAGAGAGGGAGAGAACCAATAAATGAAAAAGGCATTGGCTATATAGCAGCAAACCGAACTGCCGAGAAGAAGAATTATGTTTTGTATATGGATGGATTCTTGCAGAGAAAATTTGAGGATATAGCAGAAAAACAGAAGAAGCACAACAACAGCGACAACGAATACACTACTAACTGCTACTGCTACTGGTTGAAGTGTGTGCGTTTGTTGGCATCCATCGAAAACAAGCG</canonical>
            <polymorphic>CGTTGTGGGACCGTCGGCCACAGCCACCGGTATTTTTCGTCTACAGCTTCATGTTTTTAACCAGAATACGCTGCTAATATACTAATTTTGATAGTGTCAAACGAAGTCTAAAAATATCCAACTGATAACCATTCCTTCGTTTTCAGTGATAAGCTGACAGAATCCAAAATAGAACGCGTATCAAAGAAAGGTTTGGTCTCTCTGAATGACCCAAAATAGGCGAGTTTCGAAACTAAGTGATGATGACAGTGTGAATAATGGAGGAAGTCAATTATGATGTGATAGAAACAAAAAATCAATTTTAGCTACTATGTAATAGAACCAAAAATTGTTCAATTTCAATCGCCGTTTAAGTTTCAAGTGGTGATTAAGACGAAGGAATTATTAAACACGAAAAAATTGAATTTCCTGGAAAATCACGAAAGAGAAGATCCTGGAAAGAGGTTTTCATTGAAAATGGAGAGAATGAAAGAAAACACACTTCGTTGAGAAGAGCAAGWTTTCGGGATAGCAGATTATCCCGACACTAATCTGCGTTTCGTTGAATTGTGCATCAAATTCTGAGAAAAATAACTCGAAAATCAACTATGTAGTCACTTATTTTCCAAGAATCAATTACCAGTAGCAAAGTGTTCAAAAGTGCTAGAAACGAATGAGGCGAAAATGAAATTGTTGGTGGTGCGAATGGCATCCATTTCCCGTTGCGGAAGACTTTTGTTTGCAAAGAAGGGAATCCAAAAATAGACAAAACGACGACGAAGGAGACGAGGGAGAGAGGGAGAGAACCAATAAATGAAAAAGGCATTGGCTATATAGCAGCAAACCGAACTGCCGAGAAGAAGAATTATGTTTTGTATATGGATGGATTCTTGCAGAGAAAATTTGAGGATATAGCAGAAAAACAGAAGAAGCACAACAACAGCGACAACGAATACACTACTAACTGCTACTGCTACTGGTTGAAGTGTGTGCGTTTGTTGGCATCCATCGAAAACAAGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTTAAGTTTCAAGTGGTGAT</pcr_primer_p1>
		<pcr_primer_p2>TTGATTTTCGAGTTATTTTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CGTTTAAGTTTCAAGTGGTGATTAAGACGAAGGAATTATTAAACACGAAAAAATTGAATTTCCTGGAAAATCACGAAAGAGAAGATCCTGGAAAGAGGTTTTCATTGAAAATGGAGAGAATGAAAGAAAACACACTTCGTTGAGAAGAGCAAGTTTTCGGGATAGCAGATTATCCCGACACTAATCTGCGTTTCGTTGAATTGTGCATCAAATTCTGAGAAAAATAACTCGAAAATCAA</canonical_amplicon>
		<polymorphic_amplicon>CGTTTAAGTTTCAAGTGGTGATTAAGACGAAGGAATTATTAAACACGAAAAAATTGAATTTCCTGGAAAATCACGAAAGAGAAGATCCTGGAAAGAGGTTTTCATTGAAAATGGAGAGAATGAAAGAAAACACACTTCGTTGAGAAGAGCAAGWTTTCGGGATAGCAGATTATCCCGACACTAATCTGCGTTTCGTTGAATTGTGCATCAAATTCTGAGAAAAATAACTCGAAAATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34920</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>33775</contig_pos>
        <strand>+</strand>
        <context>TAAGCACTCT[A/T]ATAAAAcccc</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCCGTTGAAAATATTCGTGGACCTGTAACAACCAAAAAATAAGCACTCT</left_flank>
        <right_flank>ATAAAACCCCGCTATCTTTGCGCCAATATAACTCGGTTCTTGTAGAAGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAAAATAGACGTTTAATATTTTTGAGTTTAATATGGTTTTGTAGCTATTGTGAAACTTCAGGTTTTCTAAGTGTGAACTAAGTGATTCGCTGTCTTTTAGTCTGCCTGGGTAGATCCGGTTGGAATATGTTTATTATAAATTTTACAGCGAATCAGGAAGCAAAACTCACTTTGTCAATTTCTTCACTACTCCCAGTCAGTTTATTATTGCTTGGTCCACCAGCACAACCGTCACCATTGTCCGGAGTTAATTTCACATCGTGATTAGAGCACCTTGAAACAGCAAACTCGTTGCAATGAAAATTTAGTGGTGCCTGAAAATATTCTGGTTCAGATAGAAAATATTTCAGAAATCTTACCGTAATCTTCTCTTGAACATCATCCTTCTGAGAATTACCTTCTGCTACCTTGTCTCCTTTCATTGATGTCTCTTCTTGTCCAAGATGTTCCCGTTGAAAATATTCGTGGACCTGTAACAACCAAAAAATAAGCACTCTTATAAAACCCCGCTATCTTTGCGCCAATATAACTCGGTTCTTGTAGAAGATACCAAAAAGAAGTCAACTAACAAAATATTTTTGCAATTATGATAAACATTTTATCTGTTGATTACTTTTTGATATCATTCACTGGAAGTGAGATATTTGGGCTCAAACTTACCCAGTCTTTCCTCTCTGGCATCTTTTCCTCAAGGTCAGAACTAAATTTGTATTTCTCCAACGCCTCCTTTAAATCCAAATCAATAGAATTCAAAAATCCCTGGCGAACTAAACTCTCCAATTTCTTCTTCTCCTCTAGAAAACCTTTCTTCTGTGACTCTGTGACAAATTTCCCGCCTTTAAATTTCCATCCCAATGGGGTCCGTAATGTTTGATCGTTCGTAGTGATAAGAATTTCCTTTTGCTCATCAGTTAGTGTGCTCCAGAATGGTAACGTCTGAAAAACATTATCAATAGAGCGAACTTTCATAAACCTTGCTTACCTCTGCTACACAGTCG</canonical>
            <polymorphic>TGGAAAATAGACGTTTAATATTTTTGAGTTTAATATGGTTTTGTAGCTATTGTGAAACTTCAGGTTTTCTAAGTGTGAACTAAGTGATTCGCTGTCTTTTAGTCTGCCTGGGTAGATCCGGTTGGAATATGTTTATTATAAATTTTACAGCGAATCAGGAAGCAAAACTCACTTTGTCAATTTCTTCACTACTCCCAGTCAGTTTATTATTGCTTGGTCCACCAGCACAACCGTCACCATTGTCCGGAGTTAATTTCACATCGTGATTAGAGCACCTTGAAACAGCAAACTCGTTGCAATGAAAATTTAGTGGTGCCTGAAAATATTCTGGTTCAGATAGAAAATATTTCAGAAATCTTACCGTAATCTTCTCTTGAACATCATCCTTCTGAGAATTACCTTCTGCTACCTTGTCTCCTTTCATTGATGTCTCTTCTTGTCCAAGATGTTCCCGTTGAAAATATTCGTGGACCTGTAACAACCAAAAAATAAGCACTCTWATAAAACCCCGCTATCTTTGCGCCAATATAACTCGGTTCTTGTAGAAGATACCAAAAAGAAGTCAACTAACAAAATATTTTTGCAATTATGATAAACATTTTATCTGTTGATTACTTTTTGATATCATTCACTGGAAGTGAGATATTTGGGCTCAAACTTACCCAGTCTTTCCTCTCTGGCATCTTTTCCTCAAGGTCAGAACTAAATTTGTATTTCTCCAACGCCTCCTTTAAATCCAAATCAATAGAATTCAAAAATCCCTGGCGAACTAAACTCTCCAATTTCTTCTTCTCCTCTAGAAAACCTTTCTTCTGTGACTCTGTGACAAATTTCCCGCCTTTAAATTTCCATCCCAATGGGGTCCGTAATGTTTGATCGTTCGTAGTGATAAGAATTTCCTTTTGCTCATCAGTTAGTGTGCTCCAGAATGGTAACGTCTGAAAAACATTATCAATAGAGCGAACTTTCATAAACCTTGCTTACCTCTGCTACACAGTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>499 363 138</canonical_bands>
                <polymorphic_bands>862 138</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGATGTTCCCGTTGAAAATA</pcr_primer_p1>
		<pcr_primer_p2>AAAGATGCCAGAGAGGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAGATGTTCCCGTTGAAAATATTCGTGGACCTGTAACAACCAAAAAATAAGCACTCTTATAAAACCCCGCTATCTTTGCGCCAATATAACTCGGTTCTTGTAGAAGATACCAAAAAGAAGTCAACTAACAAAATATTTTTGCAATTATGATAAACATTTTATCTGTTGATTACTTTTTGATATCATTCACTGGAAGTGAGATATTTGGGCTCAAACTTACCCAGTCTTTCCTCTCTGGCATCTTT</canonical_amplicon>
		<polymorphic_amplicon>AAGATGTTCCCGTTGAAAATATTCGTGGACCTGTAACAACCAAAAAATAAGCACTCTWATAAAACCCCGCTATCTTTGCGCCAATATAACTCGGTTCTTGTAGAAGATACCAAAAAGAAGTCAACTAACAAAATATTTTTGCAATTATGATAAACATTTTATCTGTTGATTACTTTTTGATATCATTCACTGGAAGTGAGATATTTGGGCTCAAACTTACCCAGTCTTTCCTCTCTGGCATCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34921</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>33887</contig_pos>
        <strand></strand>
        <context>tatctgttga[T/C]yactttttga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTCAACTAACAAAATATTTTTGCAATTATGATAAACATTTTATCTGTTGA</left_flank>
        <right_flank>TACTTTTTGATATCATTCACTGGAAGTGAGATATTTGGGCTCAAACTTAC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGATCCGGTTGGAATATGTTTATTATAAATTTTACAGCGAATCAGGAAGCAAAACTCACTTTGTCAATTTCTTCACTACTCCCAGTCAGTTTATTATTGCTTGGTCCACCAGCACAACCGTCACCATTGTCCGGAGTTAATTTCACATCGTGATTAGAGCACCTTGAAACAGCAAACTCGTTGCAATGAAAATTTAGTGGTGCCTGAAAATATTCTGGTTCAGATAGAAAATATTTCAGAAATCTTACCGTAATCTTCTCTTGAACATCATCCTTCTGAGAATTACCTTCTGCTACCTTGTCTCCTTTCATTGATGTCTCTTCTTGTCCAAGATGTTCCCGTTGAAAATATTCGTGGACCTGTAACAACCAAAAAATAAGCACTCTTATAAAACCCCGCTATCTTTGCGCCAATATAACTCGGTTCTTGTAGAAGATACCAAAAAGAAGTCAACTAACAAAATATTTTTGCAATTATGATAAACATTTTATCTGTTGATTACTTTTTGATATCATTCACTGGAAGTGAGATATTTGGGCTCAAACTTACCCAGTCTTTCCTCTCTGGCATCTTTTCCTCAAGGTCAGAACTAAATTTGTATTTCTCCAACGCCTCCTTTAAATCCAAATCAATAGAATTCAAAAATCCCTGGCGAACTAAACTCTCCAATTTCTTCTTCTCCTCTAGAAAACCTTTCTTCTGTGACTCTGTGACAAATTTCCCGCCTTTAAATTTCCATCCCAATGGGGTCCGTAATGTTTGATCGTTCGTAGTGATAAGAATTTCCTTTTGCTCATCAGTTAGTGTGCTCCAGAATGGTAACGTCTGAAAAACATTATCAATAGAGCGAACTTTCATAAACCTTGCTTACCTCTGCTACACAGTCGTATACCTTTATTCTAGCGTCTGAACTGCAAAACCTGTCAAACTCTCTATCGAATTTGTCGTTGAGCCCCTGACGAGTTTGATCCTGTAAAAATGTATCAATTTTGGAATATT</canonical>
            <polymorphic>TAGATCCGGTTGGAATATGTTTATTATAAATTTTACAGCGAATCAGGAAGCAAAACTCACTTTGTCAATTTCTTCACTACTCCCAGTCAGTTTATTATTGCTTGGTCCACCAGCACAACCGTCACCATTGTCCGGAGTTAATTTCACATCGTGATTAGAGCACCTTGAAACAGCAAACTCGTTGCAATGAAAATTTAGTGGTGCCTGAAAATATTCTGGTTCAGATAGAAAATATTTCAGAAATCTTACCGTAATCTTCTCTTGAACATCATCCTTCTGAGAATTACCTTCTGCTACCTTGTCTCCTTTCATTGATGTCTCTTCTTGTCCAAGATGTTCCCGTTGAAAATATTCGTGGACCTGTAACAACCAAAAAATAAGCACTCTTATAAAACCCCGCTATCTTTGCGCCAATATAACTCGGTTCTTGTAGAAGATACCAAAAAGAAGTCAACTAACAAAATATTTTTGCAATTATGATAAACATTTTATCTGTTGAYTACTTTTTGATATCATTCACTGGAAGTGAGATATTTGGGCTCAAACTTACCCAGTCTTTCCTCTCTGGCATCTTTTCCTCAAGGTCAGAACTAAATTTGTATTTCTCCAACGCCTCCTTTAAATCCAAATCAATAGAATTCAAAAATCCCTGGCGAACTAAACTCTCCAATTTCTTCTTCTCCTCTAGAAAACCTTTCTTCTGTGACTCTGTGACAAATTTCCCGCCTTTAAATTTCCATCCCAATGGGGTCCGTAATGTTTGATCGTTCGTAGTGATAAGAATTTCCTTTTGCTCATCAGTTAGTGTGCTCCAGAATGGTAACGTCTGAAAAACATTATCAATAGAGCGAACTTTCATAAACCTTGCTTACCTCTGCTACACAGTCGTATACCTTTATTCTAGCGTCTGAACTGCAAAACCTGTCAAACTCTCTATCGAATTTGTCGTTGAGCCCCTGACGAGTTTGATCCTGTAAAAATGTATCAATTTTGGAATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTCGTGGACCTGTAACAAC</pcr_primer_p1>
		<pcr_primer_p2>AAATTTAGTTCTGACCTTGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATTCGTGGACCTGTAACAACCAAAAAATAAGCACTCTTATAAAACCCCGCTATCTTTGCGCCAATATAACTCGGTTCTTGTAGAAGATACCAAAAAGAAGTCAACTAACAAAATATTTTTGCAATTATGATAAACATTTTATCTGTTGATTACTTTTTGATATCATTCACTGGAAGTGAGATATTTGGGCTCAAACTTACCCAGTCTTTCCTCTCTGGCATCTTTTCCTCAAGGTCAGAACTAAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATATTCGTGGACCTGTAACAACCAAAAAATAAGCACTCTTATAAAACCCCGCTATCTTTGCGCCAATATAACTCGGTTCTTGTAGAAGATACCAAAAAGAAGTCAACTAACAAAATATTTTTGCAATTATGATAAACATTTTATCTGTTGAYTACTTTTTGATATCATTCACTGGAAGTGAGATATTTGGGCTCAAACTTACCCAGTCTTTCCTCTCTGGCATCTTTTCCTCAAGGTCAGAACTAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34922</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>33888</contig_pos>
        <strand></strand>
        <context>atctgttgay[T/C]actttttgat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCAACTAACAAAATATTTTTGCAATTATGATAAACATTTTATCTGTTGAT</left_flank>
        <right_flank>ACTTTTTGATATCATTCACTGGAAGTGAGATATTTGGGCTCAAACTTACC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATCCGGTTGGAATATGTTTATTATAAATTTTACAGCGAATCAGGAAGCAAAACTCACTTTGTCAATTTCTTCACTACTCCCAGTCAGTTTATTATTGCTTGGTCCACCAGCACAACCGTCACCATTGTCCGGAGTTAATTTCACATCGTGATTAGAGCACCTTGAAACAGCAAACTCGTTGCAATGAAAATTTAGTGGTGCCTGAAAATATTCTGGTTCAGATAGAAAATATTTCAGAAATCTTACCGTAATCTTCTCTTGAACATCATCCTTCTGAGAATTACCTTCTGCTACCTTGTCTCCTTTCATTGATGTCTCTTCTTGTCCAAGATGTTCCCGTTGAAAATATTCGTGGACCTGTAACAACCAAAAAATAAGCACTCTTATAAAACCCCGCTATCTTTGCGCCAATATAACTCGGTTCTTGTAGAAGATACCAAAAAGAAGTCAACTAACAAAATATTTTTGCAATTATGATAAACATTTTATCTGTTGATTACTTTTTGATATCATTCACTGGAAGTGAGATATTTGGGCTCAAACTTACCCAGTCTTTCCTCTCTGGCATCTTTTCCTCAAGGTCAGAACTAAATTTGTATTTCTCCAACGCCTCCTTTAAATCCAAATCAATAGAATTCAAAAATCCCTGGCGAACTAAACTCTCCAATTTCTTCTTCTCCTCTAGAAAACCTTTCTTCTGTGACTCTGTGACAAATTTCCCGCCTTTAAATTTCCATCCCAATGGGGTCCGTAATGTTTGATCGTTCGTAGTGATAAGAATTTCCTTTTGCTCATCAGTTAGTGTGCTCCAGAATGGTAACGTCTGAAAAACATTATCAATAGAGCGAACTTTCATAAACCTTGCTTACCTCTGCTACACAGTCGTATACCTTTATTCTAGCGTCTGAACTGCAAAACCTGTCAAACTCTCTATCGAATTTGTCGTTGAGCCCCTGACGAGTTTGATCCTGTAAAAATGTATCAATTTTGGAATATTT</canonical>
            <polymorphic>AGATCCGGTTGGAATATGTTTATTATAAATTTTACAGCGAATCAGGAAGCAAAACTCACTTTGTCAATTTCTTCACTACTCCCAGTCAGTTTATTATTGCTTGGTCCACCAGCACAACCGTCACCATTGTCCGGAGTTAATTTCACATCGTGATTAGAGCACCTTGAAACAGCAAACTCGTTGCAATGAAAATTTAGTGGTGCCTGAAAATATTCTGGTTCAGATAGAAAATATTTCAGAAATCTTACCGTAATCTTCTCTTGAACATCATCCTTCTGAGAATTACCTTCTGCTACCTTGTCTCCTTTCATTGATGTCTCTTCTTGTCCAAGATGTTCCCGTTGAAAATATTCGTGGACCTGTAACAACCAAAAAATAAGCACTCTTATAAAACCCCGCTATCTTTGCGCCAATATAACTCGGTTCTTGTAGAAGATACCAAAAAGAAGTCAACTAACAAAATATTTTTGCAATTATGATAAACATTTTATCTGTTGATYACTTTTTGATATCATTCACTGGAAGTGAGATATTTGGGCTCAAACTTACCCAGTCTTTCCTCTCTGGCATCTTTTCCTCAAGGTCAGAACTAAATTTGTATTTCTCCAACGCCTCCTTTAAATCCAAATCAATAGAATTCAAAAATCCCTGGCGAACTAAACTCTCCAATTTCTTCTTCTCCTCTAGAAAACCTTTCTTCTGTGACTCTGTGACAAATTTCCCGCCTTTAAATTTCCATCCCAATGGGGTCCGTAATGTTTGATCGTTCGTAGTGATAAGAATTTCCTTTTGCTCATCAGTTAGTGTGCTCCAGAATGGTAACGTCTGAAAAACATTATCAATAGAGCGAACTTTCATAAACCTTGCTTACCTCTGCTACACAGTCGTATACCTTTATTCTAGCGTCTGAACTGCAAAACCTGTCAAACTCTCTATCGAATTTGTCGTTGAGCCCCTGACGAGTTTGATCCTGTAAAAATGTATCAATTTTGGAATATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTCGTGGACCTGTAACAAC</pcr_primer_p1>
		<pcr_primer_p2>AAATTTAGTTCTGACCTTGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATTCGTGGACCTGTAACAACCAAAAAATAAGCACTCTTATAAAACCCCGCTATCTTTGCGCCAATATAACTCGGTTCTTGTAGAAGATACCAAAAAGAAGTCAACTAACAAAATATTTTTGCAATTATGATAAACATTTTATCTGTTGATTACTTTTTGATATCATTCACTGGAAGTGAGATATTTGGGCTCAAACTTACCCAGTCTTTCCTCTCTGGCATCTTTTCCTCAAGGTCAGAACTAAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATATTCGTGGACCTGTAACAACCAAAAAATAAGCACTCTTATAAAACCCCGCTATCTTTGCGCCAATATAACTCGGTTCTTGTAGAAGATACCAAAAAGAAGTCAACTAACAAAATATTTTTGCAATTATGATAAACATTTTATCTGTTGATYACTTTTTGATATCATTCACTGGAAGTGAGATATTTGGGCTCAAACTTACCCAGTCTTTCCTCTCTGGCATCTTTTCCTCAAGGTCAGAACTAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34923</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>49824</contig_pos>
        <strand></strand>
        <context>CGGCGAAGAG[A/G]GCAAACAGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAGCGGAGGTCTTTCGCAACAATTCAAAAAGTGTGCGCGCGGCGAAGAG</left_flank>
        <right_flank>GCAAACAGGGTGGTGAGAGAAAAGAGGCATTTGAAACTTTGGACAACGTT</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAAAATGTGGTTAACCAAAAAATGGATTTCTTGCAACAGTCGATTTTTTTCGAAATTTCTGAATCAATTGATTACGACAAAGTCAGCCTATTTGAAAACCCAAGAAACCGATTTTCAGGCTTTCCTTGCAAAAATTCCGGAATGAAAATACAACATTTTTTTCGAAACGAATTCCTTATCAATTTTTCTCATTTTATTAAAATTTGTCTAGTTAGTGATAAAAACGCTTTAAAAACTTTAAAAGTTCACAGCTTTCCCGGTACAAACCAAGAAAAAAACAGCCGGAAAAATCCGAAAAAAAACAACGCAAAAACAAGATAAACAAAAATTTCTTTTCTTATTTTCGTACACATGCACTAGACGATGCAAGTGCGCGCCAGACAAGAGTTTTCTTCTTTTTTCTATCTTTTCGCAGAGGAATTTACGCGCGATATTCGAATATTGAGAGAGCGGAGGTCTTTCGCAACAATTCAAAAAGTGTGCGCGCGGCGAAGAGAGCAAACAGGGTGGTGAGAGAAAAGAGGCATTTGAAACTTTGGACAACGTTTTCTCAGGCGTGAGAAAATCAAGAGTAATCATGTTTTATATAATTCTGTAGGGTTTTTCAAGAGCTACAATTTGAATGTTGATACATAAAAAACTAATAAGTTTGAAGAAAGTTATTCCCCTTATAATGTCAAAGGGAAGTAAGGTTTTGACTTGAAGGGTGTAACTCGGAAGCTAGACAATCAAACAAAGGGGTTTTCAGTGATTGTCTAGGGCTTGTTAAGAACTACAATTTGAACCCTGATTCGTAGGAAATTAATGAGCTTGAAGAAAGTTATACGTCTTTTAATGTCAACATGGAGAATAGTTTTGGTTTAAAGGAGGCCAGACACCAAAAAAAAAAGGTTTCCTGGTATTTTGCATAGAGAACCCCCATGGGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGC</canonical>
            <polymorphic>TTTCAAAATGTGGTTAACCAAAAAATGGATTTCTTGCAACAGTCGATTTTTTTCGAAATTTCTGAATCAATTGATTACGACAAAGTCAGCCTATTTGAAAACCCAAGAAACCGATTTTCAGGCTTTCCTTGCAAAAATTCCGGAATGAAAATACAACATTTTTTTCGAAACGAATTCCTTATCAATTTTTCTCATTTTATTAAAATTTGTCTAGTTAGTGATAAAAACGCTTTAAAAACTTTAAAAGTTCACAGCTTTCCCGGTACAAACCAAGAAAAAAACAGCCGGAAAAATCCGAAAAAAAACAACGCAAAAACAAGATAAACAAAAATTTCTTTTCTTATTTTCGTACACATGCACTAGACGATGCAAGTGCGCGCCAGACAAGAGTTTTCTTCTTTTTTCTATCTTTTCGCAGAGGAATTTACGCGCGATATTCGAATATTGAGAGAGCGGAGGTCTTTCGCAACAATTCAAAAAGTGTGCGCGCGGCGAAGAGRGCAAACAGGGTGGTGAGAGAAAAGAGGCATTTGAAACTTTGGACAACGTTTTCTCAGGCGTGAGAAAATCAAGAGTAATCATGTTTTATATAATTCTGTAGGGTTTTTCAAGAGCTACAATTTGAATGTTGATACATAAAAAACTAATAAGTTTGAAGAAAGTTATTCCCCTTATAATGTCAAAGGGAAGTAAGGTTTTGACTTGAAGGGTGTAACTCGGAAGCTAGACAATCAAACAAAGGGGTTTTCAGTGATTGTCTAGGGCTTGTTAAGAACTACAATTTGAACCCTGATTCGTAGGAAATTAATGAGCTTGAAGAAAGTTATACGTCTTTTAATGTCAACATGGAGAATAGTTTTGGTTTAAAGGAGGCCAGACACCAAAAAAAAAAGGTTTCCTGGTATTTTGCATAGAGAACCCCCATGGGGGGTTGAACTCATGACAGGCAGCTCAGGGGTACAGCGCCGCTACCGGCTGAGCTACGGGGGCGCGAAGGCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGACAAGAGTTTTCTTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>AACATTCAAATTGTAGCTCTTGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCAGACAAGAGTTTTCTTCTTTTTTCTATCTTTTCGCAGAGGAATTTACGCGCGATATTCGAATATTGAGAGAGCGGAGGTCTTTCGCAACAATTCAAAAAGTGTGCGCGCGGCGAAGAGAGCAAACAGGGTGGTGAGAGAAAAGAGGCATTTGAAACTTTGGACAACGTTTTCTCAGGCGTGAGAAAATCAAGAGTAATCATGTTTTATATAATTCTGTAGGGTTTTTCAAGAGCTACAATTTGAATGTT</canonical_amplicon>
		<polymorphic_amplicon>CCAGACAAGAGTTTTCTTCTTTTTTCTATCTTTTCGCAGAGGAATTTACGCGCGATATTCGAATATTGAGAGAGCGGAGGTCTTTCGCAACAATTCAAAAAGTGTGCGCGCGGCGAAGAGRGCAAACAGGGTGGTGAGAGAAAAGAGGCATTTGAAACTTTGGACAACGTTTTCTCAGGCGTGAGAAAATCAAGAGTAATCATGTTTTATATAATTCTGTAGGGTTTTTCAAGAGCTACAATTTGAATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34924</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>51019</contig_pos>
        <strand></strand>
        <context>CAAAAGTTTG[G/A]CAATAAGACA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTATTTTTTTCATGTCCCCCCACCTTTAAAGAGTATAACTCAAAAGTTTG</left_flank>
        <right_flank>CAATAAGACATAGGGGTTTTTAGTGGTTGGACAGATCTTGATAGAAGCTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAAATTTCGGAAAATGCGAGCAATTGAGCCAAAAGTAGCAACTGAGTCATAGCAACTGGGAAAATAGCAACTGGGAAAATAGAAACTGAGACAAAAGTAGCAACTGGTCAGGAAGCAACTGATCCTGTAGCAACTGAGTATTTGCCATAAGCGCGGCGCGATTTCGTCCCCCGAACTGCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAGGTCAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGACTGCTTTTTCTTTGCCCGTGTAGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCCAACAAGTTTAACTCCTCGAGGGGCATATTTAAACGAAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAGAGTATAACTCAAAAGTTTGGCAATAAGACATAGGGGTTTTTAGTGGTTGGACAGATCTTGATAGAAGCTTCATGTTCAAATTTGAATTGTAAGAAACCATTGAGTTTGAAGTCAATTGTAAGTCTTCACAAGTTAGAGTAAGATATTGTTCCTGGGATTTTTAAAACGTTTAACACAACTGGTCAGTTGTGATCGTTATTGAGTTTTAACTGGAACAGCAGAAATTTCGTTTTGAAAACTTATTTTTTGAGTTTCCTTCGTTTCAAACAATAGTGATTCTTGAAACATGAAAAACCTCACTCATCTTTAAAAATAATTTACGAGAAAAATTGAACACGATCCTGAAATTCTTTTTTTTCCAAACAAAAAACAATGGAATTAGTAAAAATTTTTCAAAATCTCTTACTCTTTATGATATTCAAAATCAGCATATTCGAAAATCCAAAGCTCATTTCAAAACGTTCCTTGCAGAAATTACAGAAAAAACTTGTTTTTTCTACACAAACATCTTATCAATTTA</canonical>
            <polymorphic>TTTGAAATTTCGGAAAATGCGAGCAATTGAGCCAAAAGTAGCAACTGAGTCATAGCAACTGGGAAAATAGCAACTGGGAAAATAGAAACTGAGACAAAAGTAGCAACTGGTCAGGAAGCAACTGATCCTGTAGCAACTGAGTATTTGCCATAAGCGCGGCGCGATTTCGTCCCCCGAACTGCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAGGTCAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGACTGCTTTTTCTTTGCCCGTGTAGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCCAACAAGTTTAACTCCTCGAGGGGCATATTTAAACGAAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAGAGTATAACTCAAAAGTTTGRCAATAAGACATAGGGGTTTTTAGTGGTTGGACAGATCTTGATAGAAGCTTCATGTTCAAATTTGAATTGTAAGAAACCATTGAGTTTGAAGTCAATTGTAAGTCTTCACAAGTTAGAGTAAGATATTGTTCCTGGGATTTTTAAAACGTTTAACACAACTGGTCAGTTGTGATCGTTATTGAGTTTTAACTGGAACAGCAGAAATTTCGTTTTGAAAACTTATTTTTTGAGTTTCCTTCGTTTCAAACAATAGTGATTCTTGAAACATGAAAAACCTCACTCATCTTTAAAAATAATTTACGAGAAAAATTGAACACGATCCTGAAATTCTTTTTTTTCCAAACAAAAAACAATGGAATTAGTAAAAATTTTTCAAAATCTCTTACTCTTTATGATATTCAAAATCAGCATATTCGAAAATCCAAAGCTCATTTCAAAACGTTCCTTGCAGAAATTACAGAAAAAACTTGTTTTTTCTACACAAACATCTTATCAATTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGCCTTTATGTATGCAATC</pcr_primer_p1>
		<pcr_primer_p2>ACTTCAAACTCAATGGTTTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>280</pcr_amplicon_size>
		<canonical_amplicon>TCGCCTTTATGTATGCAATCGGGCGACTGCTTTTTCTTTGCCCGTGTAGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCCAACAAGTTTAACTCCTCGAGGGGCATATTTAAACGAAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAGAGTATAACTCAAAAGTTTGGCAATAAGACATAGGGGTTTTTAGTGGTTGGACAGATCTTGATAGAAGCTTCATGTTCAAATTTGAATTGTAAGAAACCATTGAGTTTGAAGT</canonical_amplicon>
		<polymorphic_amplicon>TCGCCTTTATGTATGCAATCGGGCGACTGCTTTTTCTTTGCCCGTGTAGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCCAACAAGTTTAACTCCTCGAGGGGCATATTTAAACGAAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAGAGTATAACTCAAAAGTTTGRCAATAAGACATAGGGGTTTTTAGTGGTTGGACAGATCTTGATAGAAGCTTCATGTTCAAATTTGAATTGTAAGAAACCATTGAGTTTGAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34925</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>51045</contig_pos>
        <strand></strand>
        <context>GTTTTTAGTG[G/A]TTGGACAGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAAAGAGTATAACTCAAAAGTTTGGCAATAAGACATAGGGGTTTTTAGTG</left_flank>
        <right_flank>TTGGACAGATCTTGATAGAAGCTTCATGTTCAAATTTGAATTGTAAGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAGCCAAAAGTAGCAACTGAGTCATAGCAACTGGGAAAATAGCAACTGGGAAAATAGAAACTGAGACAAAAGTAGCAACTGGTCAGGAAGCAACTGATCCTGTAGCAACTGAGTATTTGCCATAAGCGCGGCGCGATTTCGTCCCCCGAACTGCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAGGTCAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGACTGCTTTTTCTTTGCCCGTGTAGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCCAACAAGTTTAACTCCTCGAGGGGCATATTTAAACGAAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAGAGTATAACTCAAAAGTTTGGCAATAAGACATAGGGGTTTTTAGTGGTTGGACAGATCTTGATAGAAGCTTCATGTTCAAATTTGAATTGTAAGAAACCATTGAGTTTGAAGTCAATTGTAAGTCTTCACAAGTTAGAGTAAGATATTGTTCCTGGGATTTTTAAAACGTTTAACACAACTGGTCAGTTGTGATCGTTATTGAGTTTTAACTGGAACAGCAGAAATTTCGTTTTGAAAACTTATTTTTTGAGTTTCCTTCGTTTCAAACAATAGTGATTCTTGAAACATGAAAAACCTCACTCATCTTTAAAAATAATTTACGAGAAAAATTGAACACGATCCTGAAATTCTTTTTTTTCCAAACAAAAAACAATGGAATTAGTAAAAATTTTTCAAAATCTCTTACTCTTTATGATATTCAAAATCAGCATATTCGAAAATCCAAAGCTCATTTCAAAACGTTCCTTGCAGAAATTACAGAAAAAACTTGTTTTTTCTACACAAACATCTTATCAATTTATCTATTCTCTCAGACTTTATCCAGTT</canonical>
            <polymorphic>TTGAGCCAAAAGTAGCAACTGAGTCATAGCAACTGGGAAAATAGCAACTGGGAAAATAGAAACTGAGACAAAAGTAGCAACTGGTCAGGAAGCAACTGATCCTGTAGCAACTGAGTATTTGCCATAAGCGCGGCGCGATTTCGTCCCCCGAACTGCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAGGTCAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGACTGCTTTTTCTTTGCCCGTGTAGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCCAACAAGTTTAACTCCTCGAGGGGCATATTTAAACGAAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAGAGTATAACTCAAAAGTTTGGCAATAAGACATAGGGGTTTTTAGTGRTTGGACAGATCTTGATAGAAGCTTCATGTTCAAATTTGAATTGTAAGAAACCATTGAGTTTGAAGTCAATTGTAAGTCTTCACAAGTTAGAGTAAGATATTGTTCCTGGGATTTTTAAAACGTTTAACACAACTGGTCAGTTGTGATCGTTATTGAGTTTTAACTGGAACAGCAGAAATTTCGTTTTGAAAACTTATTTTTTGAGTTTCCTTCGTTTCAAACAATAGTGATTCTTGAAACATGAAAAACCTCACTCATCTTTAAAAATAATTTACGAGAAAAATTGAACACGATCCTGAAATTCTTTTTTTTCCAAACAAAAAACAATGGAATTAGTAAAAATTTTTCAAAATCTCTTACTCTTTATGATATTCAAAATCAGCATATTCGAAAATCCAAAGCTCATTTCAAAACGTTCCTTGCAGAAATTACAGAAAAAACTTGTTTTTTCTACACAAACATCTTATCAATTTATCTATTCTCTCAGACTTTATCCAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACCTTTAAAGAGTATAACTCAAA</pcr_primer_p1>
		<pcr_primer_p2>AAACGAAATTTCTGCTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CCACCTTTAAAGAGTATAACTCAAAAGTTTGGCAATAAGACATAGGGGTTTTTAGTGGTTGGACAGATCTTGATAGAAGCTTCATGTTCAAATTTGAATTGTAAGAAACCATTGAGTTTGAAGTCAATTGTAAGTCTTCACAAGTTAGAGTAAGATATTGTTCCTGGGATTTTTAAAACGTTTAACACAACTGGTCAGTTGTGATCGTTATTGAGTTTTAACTGGAACAGCAGAAATTTCGTTT</canonical_amplicon>
		<polymorphic_amplicon>CCACCTTTAAAGAGTATAACTCAAAAGTTTGGCAATAAGACATAGGGGTTTTTAGTGRTTGGACAGATCTTGATAGAAGCTTCATGTTCAAATTTGAATTGTAAGAAACCATTGAGTTTGAAGTCAATTGTAAGTCTTCACAAGTTAGAGTAAGATATTGTTCCTGGGATTTTTAAAACGTTTAACACAACTGGTCAGTTGTGATCGTTATTGAGTTTTAACTGGAACAGCAGAAATTTCGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34926</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>51056</contig_pos>
        <strand></strand>
        <context>TTGGACAGAT[C/A]TTGATAGAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ACTCAAAAGTTTGGCAATAAGACATAGGGGTTTTTAGTGGTTGGACAGAT</left_flank>
        <right_flank>TTGATAGAAGCTTCATGTTCAAATTTGAATTGTAAGAAACCATTGAGTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAGCAACTGAGTCATAGCAACTGGGAAAATAGCAACTGGGAAAATAGAAACTGAGACAAAAGTAGCAACTGGTCAGGAAGCAACTGATCCTGTAGCAACTGAGTATTTGCCATAAGCGCGGCGCGATTTCGTCCCCCGAACTGCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAGGTCAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGACTGCTTTTTCTTTGCCCGTGTAGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCCAACAAGTTTAACTCCTCGAGGGGCATATTTAAACGAAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAGAGTATAACTCAAAAGTTTGGCAATAAGACATAGGGGTTTTTAGTGGTTGGACAGATCTTGATAGAAGCTTCATGTTCAAATTTGAATTGTAAGAAACCATTGAGTTTGAAGTCAATTGTAAGTCTTCACAAGTTAGAGTAAGATATTGTTCCTGGGATTTTTAAAACGTTTAACACAACTGGTCAGTTGTGATCGTTATTGAGTTTTAACTGGAACAGCAGAAATTTCGTTTTGAAAACTTATTTTTTGAGTTTCCTTCGTTTCAAACAATAGTGATTCTTGAAACATGAAAAACCTCACTCATCTTTAAAAATAATTTACGAGAAAAATTGAACACGATCCTGAAATTCTTTTTTTTCCAAACAAAAAACAATGGAATTAGTAAAAATTTTTCAAAATCTCTTACTCTTTATGATATTCAAAATCAGCATATTCGAAAATCCAAAGCTCATTTCAAAACGTTCCTTGCAGAAATTACAGAAAAAACTTGTTTTTTCTACACAAACATCTTATCAATTTATCTATTCTCTCAGACTTTATCCAGTTAGAAGTGAAAT</canonical>
            <polymorphic>GTAGCAACTGAGTCATAGCAACTGGGAAAATAGCAACTGGGAAAATAGAAACTGAGACAAAAGTAGCAACTGGTCAGGAAGCAACTGATCCTGTAGCAACTGAGTATTTGCCATAAGCGCGGCGCGATTTCGTCCCCCGAACTGCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAGGTCAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGACTGCTTTTTCTTTGCCCGTGTAGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCCAACAAGTTTAACTCCTCGAGGGGCATATTTAAACGAAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAGAGTATAACTCAAAAGTTTGGCAATAAGACATAGGGGTTTTTAGTGGTTGGACAGATMTTGATAGAAGCTTCATGTTCAAATTTGAATTGTAAGAAACCATTGAGTTTGAAGTCAATTGTAAGTCTTCACAAGTTAGAGTAAGATATTGTTCCTGGGATTTTTAAAACGTTTAACACAACTGGTCAGTTGTGATCGTTATTGAGTTTTAACTGGAACAGCAGAAATTTCGTTTTGAAAACTTATTTTTTGAGTTTCCTTCGTTTCAAACAATAGTGATTCTTGAAACATGAAAAACCTCACTCATCTTTAAAAATAATTTACGAGAAAAATTGAACACGATCCTGAAATTCTTTTTTTTCCAAACAAAAAACAATGGAATTAGTAAAAATTTTTCAAAATCTCTTACTCTTTATGATATTCAAAATCAGCATATTCGAAAATCCAAAGCTCATTTCAAAACGTTCCTTGCAGAAATTACAGAAAAAACTTGTTTTTTCTACACAAACATCTTATCAATTTATCTATTCTCTCAGACTTTATCCAGTTAGAAGTGAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>410 220 147 137 86</canonical_bands>
                <polymorphic_bands>547 220 147 86</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>223 222 216 107 95 75 62</canonical_bands>
                <polymorphic_bands>317 223 216 107 75 62</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACCTTTAAAGAGTATAACTCAAA</pcr_primer_p1>
		<pcr_primer_p2>AAACGAAATTTCTGCTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CCACCTTTAAAGAGTATAACTCAAAAGTTTGGCAATAAGACATAGGGGTTTTTAGTGGTTGGACAGATCTTGATAGAAGCTTCATGTTCAAATTTGAATTGTAAGAAACCATTGAGTTTGAAGTCAATTGTAAGTCTTCACAAGTTAGAGTAAGATATTGTTCCTGGGATTTTTAAAACGTTTAACACAACTGGTCAGTTGTGATCGTTATTGAGTTTTAACTGGAACAGCAGAAATTTCGTTT</canonical_amplicon>
		<polymorphic_amplicon>CCACCTTTAAAGAGTATAACTCAAAAGTTTGGCAATAAGACATAGGGGTTTTTAGTGGTTGGACAGATMTTGATAGAAGCTTCATGTTCAAATTTGAATTGTAAGAAACCATTGAGTTTGAAGTCAATTGTAAGTCTTCACAAGTTAGAGTAAGATATTGTTCCTGGGATTTTTAAAACGTTTAACACAACTGGTCAGTTGTGATCGTTATTGAGTTTTAACTGGAACAGCAGAAATTTCGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34927</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>51087</contig_pos>
        <strand></strand>
        <context>AAATTTGAAT[T/C]GTAAGAAACC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTAGTGGTTGGACAGATCTTGATAGAAGCTTCATGTTCAAATTTGAAT</left_flank>
        <right_flank>GTAAGAAACCATTGAGTTTGAAGTCAATTGTAAGTCTTCACAAGTTAGAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCAACTGGGAAAATAGAAACTGAGACAAAAGTAGCAACTGGTCAGGAAGCAACTGATCCTGTAGCAACTGAGTATTTGCCATAAGCGCGGCGCGATTTCGTCCCCCGAACTGCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAGGTCAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGACTGCTTTTTCTTTGCCCGTGTAGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCCAACAAGTTTAACTCCTCGAGGGGCATATTTAAACGAAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAGAGTATAACTCAAAAGTTTGGCAATAAGACATAGGGGTTTTTAGTGGTTGGACAGATCTTGATAGAAGCTTCATGTTCAAATTTGAATTGTAAGAAACCATTGAGTTTGAAGTCAATTGTAAGTCTTCACAAGTTAGAGTAAGATATTGTTCCTGGGATTTTTAAAACGTTTAACACAACTGGTCAGTTGTGATCGTTATTGAGTTTTAACTGGAACAGCAGAAATTTCGTTTTGAAAACTTATTTTTTGAGTTTCCTTCGTTTCAAACAATAGTGATTCTTGAAACATGAAAAACCTCACTCATCTTTAAAAATAATTTACGAGAAAAATTGAACACGATCCTGAAATTCTTTTTTTTCCAAACAAAAAACAATGGAATTAGTAAAAATTTTTCAAAATCTCTTACTCTTTATGATATTCAAAATCAGCATATTCGAAAATCCAAAGCTCATTTCAAAACGTTCCTTGCAGAAATTACAGAAAAAACTTGTTTTTTCTACACAAACATCTTATCAATTTATCTATTCTCTCAGACTTTATCCAGTTAGAAGTGAAATCTCTGAAACTTTAAAAGTTCGTGGTTTTTCG</canonical>
            <polymorphic>AGCAACTGGGAAAATAGAAACTGAGACAAAAGTAGCAACTGGTCAGGAAGCAACTGATCCTGTAGCAACTGAGTATTTGCCATAAGCGCGGCGCGATTTCGTCCCCCGAACTGCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAGGTCAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGACTGCTTTTTCTTTGCCCGTGTAGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCCAACAAGTTTAACTCCTCGAGGGGCATATTTAAACGAAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAGAGTATAACTCAAAAGTTTGGCAATAAGACATAGGGGTTTTTAGTGGTTGGACAGATCTTGATAGAAGCTTCATGTTCAAATTTGAATYGTAAGAAACCATTGAGTTTGAAGTCAATTGTAAGTCTTCACAAGTTAGAGTAAGATATTGTTCCTGGGATTTTTAAAACGTTTAACACAACTGGTCAGTTGTGATCGTTATTGAGTTTTAACTGGAACAGCAGAAATTTCGTTTTGAAAACTTATTTTTTGAGTTTCCTTCGTTTCAAACAATAGTGATTCTTGAAACATGAAAAACCTCACTCATCTTTAAAAATAATTTACGAGAAAAATTGAACACGATCCTGAAATTCTTTTTTTTCCAAACAAAAAACAATGGAATTAGTAAAAATTTTTCAAAATCTCTTACTCTTTATGATATTCAAAATCAGCATATTCGAAAATCCAAAGCTCATTTCAAAACGTTCCTTGCAGAAATTACAGAAAAAACTTGTTTTTTCTACACAAACATCTTATCAATTTATCTATTCTCTCAGACTTTATCCAGTTAGAAGTGAAATCTCTGAAACTTTAAAAGTTCGTGGTTTTTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>248 122 120 109 92 86 74 42 31 29 18 13 10 6</canonical_bands>
                <polymorphic_bands>248 122 120 109 92 86 74 42 35 31 18 13 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAAGACATAGGGGTTTTTAGTG</pcr_primer_p1>
		<pcr_primer_p2>TATTGTTTGAAACGAAGGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATAAGACATAGGGGTTTTTAGTGGTTGGACAGATCTTGATAGAAGCTTCATGTTCAAATTTGAATTGTAAGAAACCATTGAGTTTGAAGTCAATTGTAAGTCTTCACAAGTTAGAGTAAGATATTGTTCCTGGGATTTTTAAAACGTTTAACACAACTGGTCAGTTGTGATCGTTATTGAGTTTTAACTGGAACAGCAGAAATTTCGTTTTGAAAACTTATTTTTTGAGTTTCCTTCGTTTCAAACAATA</canonical_amplicon>
		<polymorphic_amplicon>AATAAGACATAGGGGTTTTTAGTGGTTGGACAGATCTTGATAGAAGCTTCATGTTCAAATTTGAATYGTAAGAAACCATTGAGTTTGAAGTCAATTGTAAGTCTTCACAAGTTAGAGTAAGATATTGTTCCTGGGATTTTTAAAACGTTTAACACAACTGGTCAGTTGTGATCGTTATTGAGTTTTAACTGGAACAGCAGAAATTTCGTTTTGAAAACTTATTTTTTGAGTTTCCTTCGTTTCAAACAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34928</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>51177</contig_pos>
        <strand></strand>
        <context>GTTTAACACA[A/T]CTGGTCAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACAAGTTAGAGTAAGATATTGTTCCTGGGATTTTTAAAACGTTTAACACA</left_flank>
        <right_flank>CTGGTCAGTTGTGATCGTTATTGAGTTTTAACTGGAACAGCAGAAATTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGCGATTTCGTCCCCCGAACTGCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAGGTCAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGACTGCTTTTTCTTTGCCCGTGTAGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCCAACAAGTTTAACTCCTCGAGGGGCATATTTAAACGAAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAGAGTATAACTCAAAAGTTTGGCAATAAGACATAGGGGTTTTTAGTGGTTGGACAGATCTTGATAGAAGCTTCATGTTCAAATTTGAATTGTAAGAAACCATTGAGTTTGAAGTCAATTGTAAGTCTTCACAAGTTAGAGTAAGATATTGTTCCTGGGATTTTTAAAACGTTTAACACAACTGGTCAGTTGTGATCGTTATTGAGTTTTAACTGGAACAGCAGAAATTTCGTTTTGAAAACTTATTTTTTGAGTTTCCTTCGTTTCAAACAATAGTGATTCTTGAAACATGAAAAACCTCACTCATCTTTAAAAATAATTTACGAGAAAAATTGAACACGATCCTGAAATTCTTTTTTTTCCAAACAAAAAACAATGGAATTAGTAAAAATTTTTCAAAATCTCTTACTCTTTATGATATTCAAAATCAGCATATTCGAAAATCCAAAGCTCATTTCAAAACGTTCCTTGCAGAAATTACAGAAAAAACTTGTTTTTTCTACACAAACATCTTATCAATTTATCTATTCTCTCAGACTTTATCCAGTTAGAAGTGAAATCTCTGAAACTTTAAAAGTTCGTGGTTTTTCGGTTAAATACCGAGTTGACCGCTGGAAATAACTGAAAACCAAAACTTCAGAAAGTAACTTTTTCCAATTGGTTCACTTTTATTCTGTTTCA</canonical>
            <polymorphic>GCGCGATTTCGTCCCCCGAACTGCCCCCGAAATTTTTGCTGTCTCGCCTCCTTTAAAGGTCAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGACTGCTTTTTCTTTGCCCGTGTAGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCCAACAAGTTTAACTCCTCGAGGGGCATATTTAAACGAAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAGAGTATAACTCAAAAGTTTGGCAATAAGACATAGGGGTTTTTAGTGGTTGGACAGATCTTGATAGAAGCTTCATGTTCAAATTTGAATTGTAAGAAACCATTGAGTTTGAAGTCAATTGTAAGTCTTCACAAGTTAGAGTAAGATATTGTTCCTGGGATTTTTAAAACGTTTAACACAWCTGGTCAGTTGTGATCGTTATTGAGTTTTAACTGGAACAGCAGAAATTTCGTTTTGAAAACTTATTTTTTGAGTTTCCTTCGTTTCAAACAATAGTGATTCTTGAAACATGAAAAACCTCACTCATCTTTAAAAATAATTTACGAGAAAAATTGAACACGATCCTGAAATTCTTTTTTTTCCAAACAAAAAACAATGGAATTAGTAAAAATTTTTCAAAATCTCTTACTCTTTATGATATTCAAAATCAGCATATTCGAAAATCCAAAGCTCATTTCAAAACGTTCCTTGCAGAAATTACAGAAAAAACTTGTTTTTTCTACACAAACATCTTATCAATTTATCTATTCTCTCAGACTTTATCCAGTTAGAAGTGAAATCTCTGAAACTTTAAAAGTTCGTGGTTTTTCGGTTAAATACCGAGTTGACCGCTGGAAATAACTGAAAACCAAAACTTCAGAAAGTAACTTTTTCCAATTGGTTCACTTTTATTCTGTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATAGAAGCTTCATGTTCAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGATGAGTGAGGTTTTTCATGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGATAGAAGCTTCATGTTCAAATTTGAATTGTAAGAAACCATTGAGTTTGAAGTCAATTGTAAGTCTTCACAAGTTAGAGTAAGATATTGTTCCTGGGATTTTTAAAACGTTTAACACAACTGGTCAGTTGTGATCGTTATTGAGTTTTAACTGGAACAGCAGAAATTTCGTTTTGAAAACTTATTTTTTGAGTTTCCTTCGTTTCAAACAATAGTGATTCTTGAAACATGAAAAACCTCACTCATCT</canonical_amplicon>
		<polymorphic_amplicon>TGATAGAAGCTTCATGTTCAAATTTGAATTGTAAGAAACCATTGAGTTTGAAGTCAATTGTAAGTCTTCACAAGTTAGAGTAAGATATTGTTCCTGGGATTTTTAAAACGTTTAACACAWCTGGTCAGTTGTGATCGTTATTGAGTTTTAACTGGAACAGCAGAAATTTCGTTTTGAAAACTTATTTTTTGAGTTTCCTTCGTTTCAAACAATAGTGATTCTTGAAACATGAAAAACCTCACTCATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34929</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>51307</contig_pos>
        <strand></strand>
        <context>CACTCATCTT[T/A]AAAAATAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCGTTTCAAACAATAGTGATTCTTGAAACATGAAAAACCTCACTCATCTT</left_flank>
        <right_flank>AAAAATAATTTACGAGAAAAATTGAACACGATCCTGAAATTCTTTTTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGACTGCTTTTTCTTTGCCCGTGTAGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCCAACAAGTTTAACTCCTCGAGGGGCATATTTAAACGAAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAGAGTATAACTCAAAAGTTTGGCAATAAGACATAGGGGTTTTTAGTGGTTGGACAGATCTTGATAGAAGCTTCATGTTCAAATTTGAATTGTAAGAAACCATTGAGTTTGAAGTCAATTGTAAGTCTTCACAAGTTAGAGTAAGATATTGTTCCTGGGATTTTTAAAACGTTTAACACAACTGGTCAGTTGTGATCGTTATTGAGTTTTAACTGGAACAGCAGAAATTTCGTTTTGAAAACTTATTTTTTGAGTTTCCTTCGTTTCAAACAATAGTGATTCTTGAAACATGAAAAACCTCACTCATCTTTAAAAATAATTTACGAGAAAAATTGAACACGATCCTGAAATTCTTTTTTTTCCAAACAAAAAACAATGGAATTAGTAAAAATTTTTCAAAATCTCTTACTCTTTATGATATTCAAAATCAGCATATTCGAAAATCCAAAGCTCATTTCAAAACGTTCCTTGCAGAAATTACAGAAAAAACTTGTTTTTTCTACACAAACATCTTATCAATTTATCTATTCTCTCAGACTTTATCCAGTTAGAAGTGAAATCTCTGAAACTTTAAAAGTTCGTGGTTTTTCGGTTAAATACCGAGTTGACCGCTGGAAATAACTGAAAACCAAAACTTCAGAAAGTAACTTTTTCCAATTGGTTCACTTTTATTCTGTTTCATTTATTTTATAAGAACGTTAGAGGAGACTTATTCCGTTAATAAATCCAAACTAACAAAAATTATATGCGTAATTGAAACTCTAGTTTTCAATTATTAAAGCATTTTCAAAGAGCTGGGAAATTGTAATTG</canonical>
            <polymorphic>TCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGACTGCTTTTTCTTTGCCCGTGTAGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCATCGCCCCAACAAGTTTAACTCCTCGAGGGGCATATTTAAACGAAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAGAGTATAACTCAAAAGTTTGGCAATAAGACATAGGGGTTTTTAGTGGTTGGACAGATCTTGATAGAAGCTTCATGTTCAAATTTGAATTGTAAGAAACCATTGAGTTTGAAGTCAATTGTAAGTCTTCACAAGTTAGAGTAAGATATTGTTCCTGGGATTTTTAAAACGTTTAACACAACTGGTCAGTTGTGATCGTTATTGAGTTTTAACTGGAACAGCAGAAATTTCGTTTTGAAAACTTATTTTTTGAGTTTCCTTCGTTTCAAACAATAGTGATTCTTGAAACATGAAAAACCTCACTCATCTTWAAAAATAATTTACGAGAAAAATTGAACACGATCCTGAAATTCTTTTTTTTCCAAACAAAAAACAATGGAATTAGTAAAAATTTTTCAAAATCTCTTACTCTTTATGATATTCAAAATCAGCATATTCGAAAATCCAAAGCTCATTTCAAAACGTTCCTTGCAGAAATTACAGAAAAAACTTGTTTTTTCTACACAAACATCTTATCAATTTATCTATTCTCTCAGACTTTATCCAGTTAGAAGTGAAATCTCTGAAACTTTAAAAGTTCGTGGTTTTTCGGTTAAATACCGAGTTGACCGCTGGAAATAACTGAAAACCAAAACTTCAGAAAGTAACTTTTTCCAATTGGTTCACTTTTATTCTGTTTCATTTATTTTATAAGAACGTTAGAGGAGACTTATTCCGTTAATAAATCCAAACTAACAAAAATTATATGCGTAATTGAAACTCTAGTTTTCAATTATTAAAGCATTTTCAAAGAGCTGGGAAATTGTAATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>261 239 166 146 142 46</canonical_bands>
                <polymorphic_bands>407 239 166 142 46</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>261 166 125 120 101 58 46 36 35 22 21 9</canonical_bands>
                <polymorphic_bands>362 166 125 120 58 46 36 35 22 21 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTTATTGAGTTTTAACTGGAAC</pcr_primer_p1>
		<pcr_primer_p2>GATTTTCGAATATGCTGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGTTATTGAGTTTTAACTGGAACAGCAGAAATTTCGTTTTGAAAACTTATTTTTTGAGTTTCCTTCGTTTCAAACAATAGTGATTCTTGAAACATGAAAAACCTCACTCATCTTTAAAAATAATTTACGAGAAAAATTGAACACGATCCTGAAATTCTTTTTTTTCCAAACAAAAAACAATGGAATTAGTAAAAATTTTTCAAAATCTCTTACTCTTTATGATATTCAAAATCAGCATATTCGAAAATC</canonical_amplicon>
		<polymorphic_amplicon>CGTTATTGAGTTTTAACTGGAACAGCAGAAATTTCGTTTTGAAAACTTATTTTTTGAGTTTCCTTCGTTTCAAACAATAGTGATTCTTGAAACATGAAAAACCTCACTCATCTTWAAAAATAATTTACGAGAAAAATTGAACACGATCCTGAAATTCTTTTTTTTCCAAACAAAAAACAATGGAATTAGTAAAAATTTTTCAAAATCTCTTACTCTTTATGATATTCAAAATCAGCATATTCGAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34930</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>53728</contig_pos>
        <strand>+</strand>
        <context>ATTTAGGCTA[A/G]CTATAAGCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTCTTCTACGAATTTCACGCTGAGATATGCATTTTCCAATTTAGGCTA</left_flank>
        <right_flank>CTATAAGCAGTTTCGTTCGTTCCAGGATGAACGGTCCTAGTGTGGGTCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAGAAATGAGATGCCGCGGGGTGTGACTTTTTGCCTGTTTCAAACTCTTTCTGTATATTCCGTACTATTTTTACACCCCTGATTTCATTTTTTTTACCATTCAATAAACAAATTGATTCTCTATACGAATCTCATGAAAAAGAGAAGAAACCTGATATTTTAATAAACGGCCAGTCACCCTCCTAATATTGAGGACTTCCCTTCTGCCCACGTGGTCGATTGATAAGAGAAAATATTAGACATCTTCTCCTATATATTCACATCTTGTTTCCAATTAGAAATATTTCGTCTTGTACATATTGTGACATATTTTCTATTTTGATTGTTTTGTTGAATATGTTTTGGATGTTATATGTAGTAGGTTTGAATCGTGTGAAATGATAATAATGTGTATTCGAGTTTTCCAGTTTCAGTTAGTTTACAAAATAACTGTCTGAGCTTGGTTGTTGTTCTTCTACGAATTTCACGCTGAGATATGCATTTTCCAATTTAGGCTAGCTATAAGCAGTTTCGTTCGTTCCAGGATGAACGGTCCTAGTGTGGGTCCTGGGGTTTGGTAAGTTAGGATCGTGAACATTGGGAATTTGTTGGGATCAGCGGTCCATCGTGATACCGCTCTTCTCGGAAAGAGCGAGCATTATTAGTGCATTTGAAGTTTCCAGGAATCAATTTCTATATTGTCGACTTCTCATTAGATGAGAAGTATATATTAGGTTGGCAGGAAAGTAACTGTCCCTTGTTTTATTTGTGAATAATACAAAAGCAGGATTAATCCAAGATTAGCAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGTTTTTTAATTTTGTTCCTTATTCCTTCTTCCTTCTTCCTGATTTTTTTTTGTTATTCCTTTTCAAAACTTTAAACGTTCTAAATTGCCGCGTAACATTTTATTTGCACGGTTTTTCGGAAATTT</canonical>
            <polymorphic>GAGAGAAATGAGATGCCGCGGGGTGTGACTTTTTGCCTGTTTCAAACTCTTTCTGTATATTCCGTACTATTTTTACACCCCTGATTTCATTTTTTTTACCATTCAATAAACAAATTGATTCTCTATACGAATCTCATGAAAAAGAGAAGAAACCTGATATTTTAATAAACGGCCAGTCACCCTCCTAATATTGAGGACTTCCCTTCTGCCCACGTGGTCGATTGATAAGAGAAAATATTAGACATCTTCTCCTATATATTCACATCTTGTTTCCAATTAGAAATATTTCGTCTTGTACATATTGTGACATATTTTCTATTTTGATTGTTTTGTTGAATATGTTTTGGATGTTATATGTAGTAGGTTTGAATCGTGTGAAATGATAATAATGTGTATTCGAGTTTTCCAGTTTCAGTTAGTTTACAAAATAACTGTCTGAGCTTGGTTGTTGTTCTTCTACGAATTTCACGCTGAGATATGCATTTTCCAATTTAGGCTARCTATAAGCAGTTTCGTTCGTTCCAGGATGAACGGTCCTAGTGTGGGTCCTGGGGTTTGGTAAGTTAGGATCGTGAACATTGGGAATTTGTTGGGATCAGCGGTCCATCGTGATACCGCTCTTCTCGGAAAGAGCGAGCATTATTAGTGCATTTGAAGTTTCCAGGAATCAATTTCTATATTGTCGACTTCTCATTAGATGAGAAGTATATATTAGGTTGGCAGGAAAGTAACTGTCCCTTGTTTTATTTGTGAATAATACAAAAGCAGGATTAATCCAAGATTAGCAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGTTTTTTAATTTTGTTCCTTATTCCTTCTTCCTTCTTCCTGATTTTTTTTTGTTATTCCTTTTCAAAACTTTAAACGTTCTAAATTGCCGCGTAACATTTTATTTGCACGGTTTTTCGGAAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>500 440 60</canonical_bands>
                <polymorphic_bands>560 440</polymorphic_bands>
            </assay>
            <assay>
                <site>GCTAGC</site>
                <isoschizomers>
                    <enzyme>AsuNHI</enzyme>
                    <enzyme>BmtI</enzyme>
                    <enzyme>NheI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>497 463 40</canonical_bands>
                <polymorphic_bands>537 463</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 365 137</canonical_bands>
                <polymorphic_bands>635 365</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>500 268 172 56 4</canonical_bands>
                <polymorphic_bands>504 268 172 56</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTGAATATGTTTTGGATGTTAT</pcr_primer_p1>
		<pcr_primer_p2>CAATGTTCACGATCCTAACTTAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGTTGAATATGTTTTGGATGTTATATGTAGTAGGTTTGAATCGTGTGAAATGATAATAATGTGTATTCGAGTTTTCCAGTTTCAGTTAGTTTACAAAATAACTGTCTGAGCTTGGTTGTTGTTCTTCTACGAATTTCACGCTGAGATATGCATTTTCCAATTTAGGCTAGCTATAAGCAGTTTCGTTCGTTCCAGGATGAACGGTCCTAGTGTGGGTCCTGGGGTTTGGTAAGTTAGGATCGTGAACATTG</canonical_amplicon>
		<polymorphic_amplicon>TGTTGAATATGTTTTGGATGTTATATGTAGTAGGTTTGAATCGTGTGAAATGATAATAATGTGTATTCGAGTTTTCCAGTTTCAGTTAGTTTACAAAATAACTGTCTGAGCTTGGTTGTTGTTCTTCTACGAATTTCACGCTGAGATATGCATTTTCCAATTTAGGCTARCTATAAGCAGTTTCGTTCGTTCCAGGATGAACGGTCCTAGTGTGGGTCCTGGGGTTTGGTAAGTTAGGATCGTGAACATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34931</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>53865</contig_pos>
        <strand>+</strand>
        <context>GAAAGAGCGR[A/G]CATTATTAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGTTGGGATCAGCGGTCCATCGTGATACCGCTCTTCTCGGAAAGAGCGA</left_flank>
        <right_flank>CATTATTAGTGCATTTGAAGTTTCCAGGAATCAATTTCTATATTGTCGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAAGAGAAGAAACCTGATATTTTAATAAACGGCCAGTCACCCTCCTAATATTGAGGACTTCCCTTCTGCCCACGTGGTCGATTGATAAGAGAAAATATTAGACATCTTCTCCTATATATTCACATCTTGTTTCCAATTAGAAATATTTCGTCTTGTACATATTGTGACATATTTTCTATTTTGATTGTTTTGTTGAATATGTTTTGGATGTTATATGTAGTAGGTTTGAATCGTGTGAAATGATAATAATGTGTATTCGAGTTTTCCAGTTTCAGTTAGTTTACAAAATAACTGTCTGAGCTTGGTTGTTGTTCTTCTACGAATTTCACGCTGAGATATGCATTTTCCAATTTAGGCTAGCTATAAGCAGTTTCGTTCGTTCCAGGATGAACGGTCCTAGTGTGGGTCCTGGGGTTTGGTAAGTTAGGATCGTGAACATTGGGAATTTGTTGGGATCAGCGGTCCATCGTGATACCGCTCTTCTCGGAAAGAGCGAGCATTATTAGTGCATTTGAAGTTTCCAGGAATCAATTTCTATATTGTCGACTTCTCATTAGATGAGAAGTATATATTAGGTTGGCAGGAAAGTAACTGTCCCTTGTTTTATTTGTGAATAATACAAAAGCAGGATTAATCCAAGATTAGCAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGTTTTTTAATTTTGTTCCTTATTCCTTCTTCCTTCTTCCTGATTTTTTTTTGTTATTCCTTTTCAAAACTTTAAACGTTCTAAATTGCCGCGTAACATTTTATTTGCACGGTTTTTCGGAAATTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTGTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGACAAATTAACTTTTTGTTCACTCAATTTGAAAAATTGTGGCCTTAAAAACTGATAATTCACA</canonical>
            <polymorphic>GAAAAAGAGAAGAAACCTGATATTTTAATAAACGGCCAGTCACCCTCCTAATATTGAGGACTTCCCTTCTGCCCACGTGGTCGATTGATAAGAGAAAATATTAGACATCTTCTCCTATATATTCACATCTTGTTTCCAATTAGAAATATTTCGTCTTGTACATATTGTGACATATTTTCTATTTTGATTGTTTTGTTGAATATGTTTTGGATGTTATATGTAGTAGGTTTGAATCGTGTGAAATGATAATAATGTGTATTCGAGTTTTCCAGTTTCAGTTAGTTTACAAAATAACTGTCTGAGCTTGGTTGTTGTTCTTCTACGAATTTCACGCTGAGATATGCATTTTCCAATTTAGGCTAGCTATAAGCAGTTTCGTTCGTTCCAGGATGAACGGTCCTAGTGTGGGTCCTGGGGTTTGGTAAGTTAGGATCGTGAACATTGGGAATTTGTTGGGATCAGCGGTCCATCGTGATACCGCTCTTCTCGGAAAGAGCGARCATTATTAGTGCATTTGAAGTTTCCAGGAATCAATTTCTATATTGTCGACTTCTCATTAGATGAGAAGTATATATTAGGTTGGCAGGAAAGTAACTGTCCCTTGTTTTATTTGTGAATAATACAAAAGCAGGATTAATCCAAGATTAGCAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGTTTTTTAATTTTGTTCCTTATTCCTTCTTCCTTCTTCCTGATTTTTTTTTGTTATTCCTTTTCAAAACTTTAAACGTTCTAAATTGCCGCGTAACATTTTATTTGCACGGTTTTTCGGAAATTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTGTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGACAAATTAACTTTTTGTTCACTCAATTTGAAAAATTGTGGCCTTAAAAACTGATAATTCACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 361 137</canonical_bands>
                <polymorphic_bands>639 361</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTGTTCTTCTACGAATTTCAC</pcr_primer_p1>
		<pcr_primer_p2>AATGAGAAGTCGACAATATAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTTGTTCTTCTACGAATTTCACGCTGAGATATGCATTTTCCAATTTAGGCTAGCTATAAGCAGTTTCGTTCGTTCCAGGATGAACGGTCCTAGTGTGGGTCCTGGGGTTTGGTAAGTTAGGATCGTGAACATTGGGAATTTGTTGGGATCAGCGGTCCATCGTGATACCGCTCTTCTCGGAAAGAGCGAGCATTATTAGTGCATTTGAAGTTTCCAGGAATCAATTTCTATATTGTCGACTTCTCATT</canonical_amplicon>
		<polymorphic_amplicon>TGTTGTTCTTCTACGAATTTCACGCTGAGATATGCATTTTCCAATTTAGGCTAGCTATAAGCAGTTTCGTTCGTTCCAGGATGAACGGTCCTAGTGTGGGTCCTGGGGTTTGGTAAGTTAGGATCGTGAACATTGGGAATTTGTTGGGATCAGCGGTCCATCGTGATACCGCTCTTCTCGGAAAGAGCGARCATTATTAGTGCATTTGAAGTTTCCAGGAATCAATTTCTATATTGTCGACTTCTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34932</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>54003</contig_pos>
        <strand></strand>
        <context>gcaggattaa[T/A]ccaagattag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAAGTAACTGTCCCTTGTTTTATTTGTGAATAATACAAAAGCAGGATTAA</left_flank>
        <right_flank>CCAAGATTAGCAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTAT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTAGAAATATTTCGTCTTGTACATATTGTGACATATTTTCTATTTTGATTGTTTTGTTGAATATGTTTTGGATGTTATATGTAGTAGGTTTGAATCGTGTGAAATGATAATAATGTGTATTCGAGTTTTCCAGTTTCAGTTAGTTTACAAAATAACTGTCTGAGCTTGGTTGTTGTTCTTCTACGAATTTCACGCTGAGATATGCATTTTCCAATTTAGGCTAGCTATAAGCAGTTTCGTTCGTTCCAGGATGAACGGTCCTAGTGTGGGTCCTGGGGTTTGGTAAGTTAGGATCGTGAACATTGGGAATTTGTTGGGATCAGCGGTCCATCGTGATACCGCTCTTCTCGGAAAGAGCGAGCATTATTAGTGCATTTGAAGTTTCCAGGAATCAATTTCTATATTGTCGACTTCTCATTAGATGAGAAGTATATATTAGGTTGGCAGGAAAGTAACTGTCCCTTGTTTTATTTGTGAATAATACAAAAGCAGGATTAATCCAAGATTAGCAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGTTTTTTAATTTTGTTCCTTATTCCTTCTTCCTTCTTCCTGATTTTTTTTTGTTATTCCTTTTCAAAACTTTAAACGTTCTAAATTGCCGCGTAACATTTTATTTGCACGGTTTTTCGGAAATTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTGTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGACAAATTAACTTTTTGTTCACTCAATTTGAAAAATTGTGGCCTTAAAAACTGATAATTCACAATTATGATTTTGTTTTTTAGTTTTTAATTTCTAGTTTGAGAGTTCCCTCTCCATTTTTCTTGTTTGTGTCTCGGTTTGTGAGTTCTCTCTTCGTTGTTCGTGTTTTAAAATAAACAGTGTTTTTCAAGACAAAAAGAA</canonical>
            <polymorphic>ATTAGAAATATTTCGTCTTGTACATATTGTGACATATTTTCTATTTTGATTGTTTTGTTGAATATGTTTTGGATGTTATATGTAGTAGGTTTGAATCGTGTGAAATGATAATAATGTGTATTCGAGTTTTCCAGTTTCAGTTAGTTTACAAAATAACTGTCTGAGCTTGGTTGTTGTTCTTCTACGAATTTCACGCTGAGATATGCATTTTCCAATTTAGGCTAGCTATAAGCAGTTTCGTTCGTTCCAGGATGAACGGTCCTAGTGTGGGTCCTGGGGTTTGGTAAGTTAGGATCGTGAACATTGGGAATTTGTTGGGATCAGCGGTCCATCGTGATACCGCTCTTCTCGGAAAGAGCGAGCATTATTAGTGCATTTGAAGTTTCCAGGAATCAATTTCTATATTGTCGACTTCTCATTAGATGAGAAGTATATATTAGGTTGGCAGGAAAGTAACTGTCCCTTGTTTTATTTGTGAATAATACAAAAGCAGGATTAAWCCAAGATTAGCAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGTTTTTTAATTTTGTTCCTTATTCCTTCTTCCTTCTTCCTGATTTTTTTTTGTTATTCCTTTTCAAAACTTTAAACGTTCTAAATTGCCGCGTAACATTTTATTTGCACGGTTTTTCGGAAATTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTGTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGACAAATTAACTTTTTGTTCACTCAATTTGAAAAATTGTGGCCTTAAAAACTGATAATTCACAATTATGATTTTGTTTTTTAGTTTTTAATTTCTAGTTTGAGAGTTCCCTCTCCATTTTTCTTGTTTGTGTCTCGGTTTGTGAGTTCTCTCTTCGTTGTTCGTGTTTTAAAATAAACAGTGTTTTTCAAGACAAAAAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTATATTGTCGACTTCTCATTA</pcr_primer_p1>
		<pcr_primer_p2>CGTGCAAATAAAATGTTACG</pcr_primer_p2>
		<pcr_amplicon_size>314</pcr_amplicon_size>
		<canonical_amplicon>TTTCTATATTGTCGACTTCTCATTAGATGAGAAGTATATATTAGGTTGGCAGGAAAGTAACTGTCCCTTGTTTTATTTGTGAATAATACAAAAGCAGGATTAATCCAAGATTAGCAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGTTTTTTAATTTTGTTCCTTATTCCTTCTTCCTTCTTCCTGATTTTTTTTTGTTATTCCTTTTCAAAACTTTAAACGTTCTAAATTGCCGCGTAACATTTTATTTGCACG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTATATTGTCGACTTCTCATTAGATGAGAAGTATATATTAGGTTGGCAGGAAAGTAACTGTCCCTTGTTTTATTTGTGAATAATACAAAAGCAGGATTAAWCCAAGATTAGCAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGTTTTTTAATTTTGTTCCTTATTCCTTCTTCCTTCTTCCTGATTTTTTTTTGTTATTCCTTTTCAAAACTTTAAACGTTCTAAATTGCCGCGTAACATTTTATTTGCACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34933</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>54120</contig_pos>
        <strand></strand>
        <context>taattttgtt[C/T]cttattcctt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGTTTTTTAATTTTGTT</left_flank>
        <right_flank>CTTATTCCTTCTTCCTTCTTCCTGATTTTTTTTTGTTATTCCTTTTCAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATTCGAGTTTTCCAGTTTCAGTTAGTTTACAAAATAACTGTCTGAGCTTGGTTGTTGTTCTTCTACGAATTTCACGCTGAGATATGCATTTTCCAATTTAGGCTAGCTATAAGCAGTTTCGTTCGTTCCAGGATGAACGGTCCTAGTGTGGGTCCTGGGGTTTGGTAAGTTAGGATCGTGAACATTGGGAATTTGTTGGGATCAGCGGTCCATCGTGATACCGCTCTTCTCGGAAAGAGCGAGCATTATTAGTGCATTTGAAGTTTCCAGGAATCAATTTCTATATTGTCGACTTCTCATTAGATGAGAAGTATATATTAGGTTGGCAGGAAAGTAACTGTCCCTTGTTTTATTTGTGAATAATACAAAAGCAGGATTAATCCAAGATTAGCAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGTTTTTTAATTTTGTTCCTTATTCCTTCTTCCTTCTTCCTGATTTTTTTTTGTTATTCCTTTTCAAAACTTTAAACGTTCTAAATTGCCGCGTAACATTTTATTTGCACGGTTTTTCGGAAATTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTGTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGACAAATTAACTTTTTGTTCACTCAATTTGAAAAATTGTGGCCTTAAAAACTGATAATTCACAATTATGATTTTGTTTTTTAGTTTTTAATTTCTAGTTTGAGAGTTCCCTCTCCATTTTTCTTGTTTGTGTCTCGGTTTGTGAGTTCTCTCTTCGTTGTTCGTGTTTTAAAATAAACAGTGTTTTTCAAGACAAAAAGAAATCTTCCTTCGTTCGGAAATTCTTTCGTTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCCATTCCTTATTCCTTATTCCTTATTCCGGATTTTCAAAATTTTTAT</canonical>
            <polymorphic>GTATTCGAGTTTTCCAGTTTCAGTTAGTTTACAAAATAACTGTCTGAGCTTGGTTGTTGTTCTTCTACGAATTTCACGCTGAGATATGCATTTTCCAATTTAGGCTAGCTATAAGCAGTTTCGTTCGTTCCAGGATGAACGGTCCTAGTGTGGGTCCTGGGGTTTGGTAAGTTAGGATCGTGAACATTGGGAATTTGTTGGGATCAGCGGTCCATCGTGATACCGCTCTTCTCGGAAAGAGCGAGCATTATTAGTGCATTTGAAGTTTCCAGGAATCAATTTCTATATTGTCGACTTCTCATTAGATGAGAAGTATATATTAGGTTGGCAGGAAAGTAACTGTCCCTTGTTTTATTTGTGAATAATACAAAAGCAGGATTAATCCAAGATTAGCAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGTTTTTTAATTTTGTTYCTTATTCCTTCTTCCTTCTTCCTGATTTTTTTTTGTTATTCCTTTTCAAAACTTTAAACGTTCTAAATTGCCGCGTAACATTTTATTTGCACGGTTTTTCGGAAATTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTGTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGACAAATTAACTTTTTGTTCACTCAATTTGAAAAATTGTGGCCTTAAAAACTGATAATTCACAATTATGATTTTGTTTTTTAGTTTTTAATTTCTAGTTTGAGAGTTCCCTCTCCATTTTTCTTGTTTGTGTCTCGGTTTGTGAGTTCTCTCTTCGTTGTTCGTGTTTTAAAATAAACAGTGTTTTTCAAGACAAAAAGAAATCTTCCTTCGTTCGGAAATTCTTTCGTTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCCATTCCTTATTCCTTATTCCTTATTCCGGATTTTCAAAATTTTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTATATTGTCGACTTCTCATTA</pcr_primer_p1>
		<pcr_primer_p2>CGTGCAAATAAAATGTTACG</pcr_primer_p2>
		<pcr_amplicon_size>314</pcr_amplicon_size>
		<canonical_amplicon>TTTCTATATTGTCGACTTCTCATTAGATGAGAAGTATATATTAGGTTGGCAGGAAAGTAACTGTCCCTTGTTTTATTTGTGAATAATACAAAAGCAGGATTAATCCAAGATTAGCAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGTTTTTTAATTTTGTTCCTTATTCCTTCTTCCTTCTTCCTGATTTTTTTTTGTTATTCCTTTTCAAAACTTTAAACGTTCTAAATTGCCGCGTAACATTTTATTTGCACG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTATATTGTCGACTTCTCATTAGATGAGAAGTATATATTAGGTTGGCAGGAAAGTAACTGTCCCTTGTTTTATTTGTGAATAATACAAAAGCAGGATTAATCCAAGATTAGCAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGTTTTTTAATTTTGTTYCTTATTCCTTCTTCCTTCTTCCTGATTTTTTTTTGTTATTCCTTTTCAAAACTTTAAACGTTCTAAATTGCCGCGTAACATTTTATTTGCACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34934</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>54164</contig_pos>
        <strand></strand>
        <context>tgttattccT[T/C]TTCAAAACTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTGTTCCTTATTCCTTCTTCCTTCTTCCTGATTTTTTTTTGTTATTCCT</left_flank>
        <right_flank>TTCAAAACTTTAAACGTTCTAAATTGCCGCGTAACATTTTATTTGCACGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGCTTGGTTGTTGTTCTTCTACGAATTTCACGCTGAGATATGCATTTTCCAATTTAGGCTAGCTATAAGCAGTTTCGTTCGTTCCAGGATGAACGGTCCTAGTGTGGGTCCTGGGGTTTGGTAAGTTAGGATCGTGAACATTGGGAATTTGTTGGGATCAGCGGTCCATCGTGATACCGCTCTTCTCGGAAAGAGCGAGCATTATTAGTGCATTTGAAGTTTCCAGGAATCAATTTCTATATTGTCGACTTCTCATTAGATGAGAAGTATATATTAGGTTGGCAGGAAAGTAACTGTCCCTTGTTTTATTTGTGAATAATACAAAAGCAGGATTAATCCAAGATTAGCAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGTTTTTTAATTTTGTTCCTTATTCCTTCTTCCTTCTTCCTGATTTTTTTTTGTTATTCCTTTTCAAAACTTTAAACGTTCTAAATTGCCGCGTAACATTTTATTTGCACGGTTTTTCGGAAATTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTGTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGACAAATTAACTTTTTGTTCACTCAATTTGAAAAATTGTGGCCTTAAAAACTGATAATTCACAATTATGATTTTGTTTTTTAGTTTTTAATTTCTAGTTTGAGAGTTCCCTCTCCATTTTTCTTGTTTGTGTCTCGGTTTGTGAGTTCTCTCTTCGTTGTTCGTGTTTTAAAATAAACAGTGTTTTTCAAGACAAAAAGAAATCTTCCTTCGTTCGGAAATTCTTTCGTTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCCATTCCTTATTCCTTATTCCTTATTCCGGATTTTCAAAATTTTTATTCCGCTCATGTCTGATTAGCAGTATGCACCGTCGTGGTCCACGA</canonical>
            <polymorphic>TGAGCTTGGTTGTTGTTCTTCTACGAATTTCACGCTGAGATATGCATTTTCCAATTTAGGCTAGCTATAAGCAGTTTCGTTCGTTCCAGGATGAACGGTCCTAGTGTGGGTCCTGGGGTTTGGTAAGTTAGGATCGTGAACATTGGGAATTTGTTGGGATCAGCGGTCCATCGTGATACCGCTCTTCTCGGAAAGAGCGAGCATTATTAGTGCATTTGAAGTTTCCAGGAATCAATTTCTATATTGTCGACTTCTCATTAGATGAGAAGTATATATTAGGTTGGCAGGAAAGTAACTGTCCCTTGTTTTATTTGTGAATAATACAAAAGCAGGATTAATCCAAGATTAGCAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGTTTTTTAATTTTGTTCCTTATTCCTTCTTCCTTCTTCCTGATTTTTTTTTGTTATTCCTYTTCAAAACTTTAAACGTTCTAAATTGCCGCGTAACATTTTATTTGCACGGTTTTTCGGAAATTTTTTTTTGGAAATCTTGGAAAAGTTATGCGTTTTTCTGTACCCCGAAAAGAAGCCGATTGAATAACGACACTGTTGACAAATTAACTTTTTGTTCACTCAATTTGAAAAATTGTGGCCTTAAAAACTGATAATTCACAATTATGATTTTGTTTTTTAGTTTTTAATTTCTAGTTTGAGAGTTCCCTCTCCATTTTTCTTGTTTGTGTCTCGGTTTGTGAGTTCTCTCTTCGTTGTTCGTGTTTTAAAATAAACAGTGTTTTTCAAGACAAAAAGAAATCTTCCTTCGTTCGGAAATTCTTTCGTTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCCATTCCTTATTCCTTATTCCTTATTCCGGATTTTCAAAATTTTTATTCCGCTCATGTCTGATTAGCAGTATGCACCGTCGTGGTCCACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTATATTGTCGACTTCTCATTA</pcr_primer_p1>
		<pcr_primer_p2>AAACCGTGCAAATAAAATGT</pcr_primer_p2>
		<pcr_amplicon_size>318</pcr_amplicon_size>
		<canonical_amplicon>TTTCTATATTGTCGACTTCTCATTAGATGAGAAGTATATATTAGGTTGGCAGGAAAGTAACTGTCCCTTGTTTTATTTGTGAATAATACAAAAGCAGGATTAATCCAAGATTAGCAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGTTTTTTAATTTTGTTCCTTATTCCTTCTTCCTTCTTCCTGATTTTTTTTTGTTATTCCTTTTCAAAACTTTAAACGTTCTAAATTGCCGCGTAACATTTTATTTGCACGGTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTATATTGTCGACTTCTCATTAGATGAGAAGTATATATTAGGTTGGCAGGAAAGTAACTGTCCCTTGTTTTATTTGTGAATAATACAAAAGCAGGATTAATCCAAGATTAGCAGCAGACATGAGCGGAATTCCTTATTCCTTATTCCTTATTCCTTATTCCGGGTGTTTTTTCTATTCCTTATTCCTTATTCCTTCTTCCGGTTTTTTAATTTTGTTCCTTATTCCTTCTTCCTTCTTCCTGATTTTTTTTTGTTATTCCTYTTCAAAACTTTAAACGTTCTAAATTGCCGCGTAACATTTTATTTGCACGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34935</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>118797</contig_pos>
        <strand>+</strand>
        <context>AAAAATTTTT[A/G]GATTCAATCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCAAAACGACATCCGACGACTCTTTTGCCACGTCATCAGAAAAATTTTT</left_flank>
        <right_flank>GATTCAATCTGCATTATTCCAGTCGTTTCACTGATTCTCACTCGAACTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGTGGAGTTTTAGATAATCATAATTGTTTTTATGACATTCAGGTTTTTTGAAATTTCAAAAATTGTCTGAAAATTGTGATTTTTTGAAAATTTGTCAAATTCCGAGAAAAACAAACTTTTCCAGAACTTTGAAGTTTCATACAATTAGATTTGTAGAAAAGCCCGTTTGGATGAAAATTACAATTTCTGAAAAAATCGAAATTGGTTAAATTTCGAAAACTGCATTTTCACAAATTTCGAATTTTCGAATTTCTAATTTCCTTACCTTCAACCACTGAAATTCCATAAACAAGCTCCAAAAACATTTGAAAAACATTCGGATCGATATCCTTCAATTCGATTTCCGACTTTCCAGATTCCGAGAAGTTTCCATTAAAAAGAGATTTGAAATATGTCGAATGAAAGCTGAGCAACATTTTGGAGACGAAAAACTTCTGGTCCCCAACCACCAAAACGACATCCGACGACTCTTTTGCCACGTCATCAGAAAAATTTTTGGATTCAATCTGCATTATTCCAGTCGTTTCACTGATTCTCACTCGAACTTCCACTGTTGCCGTTTTATTGATTTCATAGTTTGAAAATTCGTTTTTCGAAATGTGCATTGAATAAAAATTCTTCTCATCTTGAGTGAACAAATACGATCCAGTTCGGAATGATTGTCCCCCAACGAGTATATCGAAATTGGTTTTAATTGACCAATCATGAGATTGGAATTTCTCGCAGTTCAGTCCAATGCGTAGATCACCATCTTGATACTTGTACAATTTCACAGCCCTTAAATAAGACTTTTGACTTAATTCGAGGTTAAGGGTCTCAAGAAATTATAAGGAGGCGAGGCATGAGAATTGAGCTCACAACTTCAACTCGTCAAGGGGCTTACCTACAGTACCGGTCAATGAGATATACAAGAACTATTTTTCAGTAGATTTTCGGCAATTTCGATCATTTCAGGAGTCATTAAAAACTTTGCACGGATTTTTTGAAATCTCCTAGTT</canonical>
            <polymorphic>ATTGTGGAGTTTTAGATAATCATAATTGTTTTTATGACATTCAGGTTTTTTGAAATTTCAAAAATTGTCTGAAAATTGTGATTTTTTGAAAATTTGTCAAATTCCGAGAAAAACAAACTTTTCCAGAACTTTGAAGTTTCATACAATTAGATTTGTAGAAAAGCCCGTTTGGATGAAAATTACAATTTCTGAAAAAATCGAAATTGGTTAAATTTCGAAAACTGCATTTTCACAAATTTCGAATTTTCGAATTTCTAATTTCCTTACCTTCAACCACTGAAATTCCATAAACAAGCTCCAAAAACATTTGAAAAACATTCGGATCGATATCCTTCAATTCGATTTCCGACTTTCCAGATTCCGAGAAGTTTCCATTAAAAAGAGATTTGAAATATGTCGAATGAAAGCTGAGCAACATTTTGGAGACGAAAAACTTCTGGTCCCCAACCACCAAAACGACATCCGACGACTCTTTTGCCACGTCATCAGAAAAATTTTTRGATTCAATCTGCATTATTCCAGTCGTTTCACTGATTCTCACTCGAACTTCCACTGTTGCCGTTTTATTGATTTCATAGTTTGAAAATTCGTTTTTCGAAATGTGCATTGAATAAAAATTCTTCTCATCTTGAGTGAACAAATACGATCCAGTTCGGAATGATTGTCCCCCAACGAGTATATCGAAATTGGTTTTAATTGACCAATCATGAGATTGGAATTTCTCGCAGTTCAGTCCAATGCGTAGATCACCATCTTGATACTTGTACAATTTCACAGCCCTTAAATAAGACTTTTGACTTAATTCGAGGTTAAGGGTCTCAAGAAATTATAAGGAGGCGAGGCATGAGAATTGAGCTCACAACTTCAACTCGTCAAGGGGCTTACCTACAGTACCGGTCAATGAGATATACAAGAACTATTTTTCAGTAGATTTTCGGCAATTTCGATCATTTCAGGAGTCATTAAAAACTTTGCACGGATTTTTTGAAATCTCCTAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATGTCGAATGAAAGCTGAG</pcr_primer_p1>
		<pcr_primer_p2>TGTTCACTCAAGATGAGAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATATGTCGAATGAAAGCTGAGCAACATTTTGGAGACGAAAAACTTCTGGTCCCCAACCACCAAAACGACATCCGACGACTCTTTTGCCACGTCATCAGAAAAATTTTTGGATTCAATCTGCATTATTCCAGTCGTTTCACTGATTCTCACTCGAACTTCCACTGTTGCCGTTTTATTGATTTCATAGTTTGAAAATTCGTTTTTCGAAATGTGCATTGAATAAAAATTCTTCTCATCTTGAGTGAACA</canonical_amplicon>
		<polymorphic_amplicon>AATATGTCGAATGAAAGCTGAGCAACATTTTGGAGACGAAAAACTTCTGGTCCCCAACCACCAAAACGACATCCGACGACTCTTTTGCCACGTCATCAGAAAAATTTTTRGATTCAATCTGCATTATTCCAGTCGTTTCACTGATTCTCACTCGAACTTCCACTGTTGCCGTTTTATTGATTTCATAGTTTGAAAATTCGTTTTTCGAAATGTGCATTGAATAAAAATTCTTCTCATCTTGAGTGAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34936</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>118812</contig_pos>
        <strand>+</strand>
        <context>CAATCTGCAT[G/T]ATTCCAGTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GACGACTCTTTTGCCACGTCATCAGAAAAATTTTTGGATTCAATCTGCAT</left_flank>
        <right_flank>ATTCCAGTCGTTTCACTGATTCTCACTCGAACTTCCACTGTTGCCGTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAATCATAATTGTTTTTATGACATTCAGGTTTTTTGAAATTTCAAAAATTGTCTGAAAATTGTGATTTTTTGAAAATTTGTCAAATTCCGAGAAAAACAAACTTTTCCAGAACTTTGAAGTTTCATACAATTAGATTTGTAGAAAAGCCCGTTTGGATGAAAATTACAATTTCTGAAAAAATCGAAATTGGTTAAATTTCGAAAACTGCATTTTCACAAATTTCGAATTTTCGAATTTCTAATTTCCTTACCTTCAACCACTGAAATTCCATAAACAAGCTCCAAAAACATTTGAAAAACATTCGGATCGATATCCTTCAATTCGATTTCCGACTTTCCAGATTCCGAGAAGTTTCCATTAAAAAGAGATTTGAAATATGTCGAATGAAAGCTGAGCAACATTTTGGAGACGAAAAACTTCTGGTCCCCAACCACCAAAACGACATCCGACGACTCTTTTGCCACGTCATCAGAAAAATTTTTGGATTCAATCTGCATTATTCCAGTCGTTTCACTGATTCTCACTCGAACTTCCACTGTTGCCGTTTTATTGATTTCATAGTTTGAAAATTCGTTTTTCGAAATGTGCATTGAATAAAAATTCTTCTCATCTTGAGTGAACAAATACGATCCAGTTCGGAATGATTGTCCCCCAACGAGTATATCGAAATTGGTTTTAATTGACCAATCATGAGATTGGAATTTCTCGCAGTTCAGTCCAATGCGTAGATCACCATCTTGATACTTGTACAATTTCACAGCCCTTAAATAAGACTTTTGACTTAATTCGAGGTTAAGGGTCTCAAGAAATTATAAGGAGGCGAGGCATGAGAATTGAGCTCACAACTTCAACTCGTCAAGGGGCTTACCTACAGTACCGGTCAATGAGATATACAAGAACTATTTTTCAGTAGATTTTCGGCAATTTCGATCATTTCAGGAGTCATTAAAAACTTTGCACGGATTTTTTGAAATCTCCTAGTTTTTCAGCTATTTGCC</canonical>
            <polymorphic>ATAATCATAATTGTTTTTATGACATTCAGGTTTTTTGAAATTTCAAAAATTGTCTGAAAATTGTGATTTTTTGAAAATTTGTCAAATTCCGAGAAAAACAAACTTTTCCAGAACTTTGAAGTTTCATACAATTAGATTTGTAGAAAAGCCCGTTTGGATGAAAATTACAATTTCTGAAAAAATCGAAATTGGTTAAATTTCGAAAACTGCATTTTCACAAATTTCGAATTTTCGAATTTCTAATTTCCTTACCTTCAACCACTGAAATTCCATAAACAAGCTCCAAAAACATTTGAAAAACATTCGGATCGATATCCTTCAATTCGATTTCCGACTTTCCAGATTCCGAGAAGTTTCCATTAAAAAGAGATTTGAAATATGTCGAATGAAAGCTGAGCAACATTTTGGAGACGAAAAACTTCTGGTCCCCAACCACCAAAACGACATCCGACGACTCTTTTGCCACGTCATCAGAAAAATTTTTGGATTCAATCTGCATKATTCCAGTCGTTTCACTGATTCTCACTCGAACTTCCACTGTTGCCGTTTTATTGATTTCATAGTTTGAAAATTCGTTTTTCGAAATGTGCATTGAATAAAAATTCTTCTCATCTTGAGTGAACAAATACGATCCAGTTCGGAATGATTGTCCCCCAACGAGTATATCGAAATTGGTTTTAATTGACCAATCATGAGATTGGAATTTCTCGCAGTTCAGTCCAATGCGTAGATCACCATCTTGATACTTGTACAATTTCACAGCCCTTAAATAAGACTTTTGACTTAATTCGAGGTTAAGGGTCTCAAGAAATTATAAGGAGGCGAGGCATGAGAATTGAGCTCACAACTTCAACTCGTCAAGGGGCTTACCTACAGTACCGGTCAATGAGATATACAAGAACTATTTTTCAGTAGATTTTCGGCAATTTCGATCATTTCAGGAGTCATTAAAAACTTTGCACGGATTTTTTGAAATCTCCTAGTTTTTCAGCTATTTGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATGTCGAATGAAAGCTGAG</pcr_primer_p1>
		<pcr_primer_p2>TGTTCACTCAAGATGAGAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATATGTCGAATGAAAGCTGAGCAACATTTTGGAGACGAAAAACTTCTGGTCCCCAACCACCAAAACGACATCCGACGACTCTTTTGCCACGTCATCAGAAAAATTTTTGGATTCAATCTGCATTATTCCAGTCGTTTCACTGATTCTCACTCGAACTTCCACTGTTGCCGTTTTATTGATTTCATAGTTTGAAAATTCGTTTTTCGAAATGTGCATTGAATAAAAATTCTTCTCATCTTGAGTGAACA</canonical_amplicon>
		<polymorphic_amplicon>AATATGTCGAATGAAAGCTGAGCAACATTTTGGAGACGAAAAACTTCTGGTCCCCAACCACCAAAACGACATCCGACGACTCTTTTGCCACGTCATCAGAAAAATTTTTGGATTCAATCTGCATKATTCCAGTCGTTTCACTGATTCTCACTCGAACTTCCACTGTTGCCGTTTTATTGATTTCATAGTTTGAAAATTCGTTTTTCGAAATGTGCATTGAATAAAAATTCTTCTCATCTTGAGTGAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34937</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>118861</contig_pos>
        <strand>+</strand>
        <context>TGTTGCCGTT[C/T]YATTGATTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATTCCAGTCGTTTCACTGATTCTCACTCGAACTTCCACTGTTGCCGTT</left_flank>
        <right_flank>TATTGATTTCATAGTTTGAAAATTCGTTTTTCGAAATGTGCATTGAATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTCTGAAAATTGTGATTTTTTGAAAATTTGTCAAATTCCGAGAAAAACAAACTTTTCCAGAACTTTGAAGTTTCATACAATTAGATTTGTAGAAAAGCCCGTTTGGATGAAAATTACAATTTCTGAAAAAATCGAAATTGGTTAAATTTCGAAAACTGCATTTTCACAAATTTCGAATTTTCGAATTTCTAATTTCCTTACCTTCAACCACTGAAATTCCATAAACAAGCTCCAAAAACATTTGAAAAACATTCGGATCGATATCCTTCAATTCGATTTCCGACTTTCCAGATTCCGAGAAGTTTCCATTAAAAAGAGATTTGAAATATGTCGAATGAAAGCTGAGCAACATTTTGGAGACGAAAAACTTCTGGTCCCCAACCACCAAAACGACATCCGACGACTCTTTTGCCACGTCATCAGAAAAATTTTTGGATTCAATCTGCATTATTCCAGTCGTTTCACTGATTCTCACTCGAACTTCCACTGTTGCCGTTTTATTGATTTCATAGTTTGAAAATTCGTTTTTCGAAATGTGCATTGAATAAAAATTCTTCTCATCTTGAGTGAACAAATACGATCCAGTTCGGAATGATTGTCCCCCAACGAGTATATCGAAATTGGTTTTAATTGACCAATCATGAGATTGGAATTTCTCGCAGTTCAGTCCAATGCGTAGATCACCATCTTGATACTTGTACAATTTCACAGCCCTTAAATAAGACTTTTGACTTAATTCGAGGTTAAGGGTCTCAAGAAATTATAAGGAGGCGAGGCATGAGAATTGAGCTCACAACTTCAACTCGTCAAGGGGCTTACCTACAGTACCGGTCAATGAGATATACAAGAACTATTTTTCAGTAGATTTTCGGCAATTTCGATCATTTCAGGAGTCATTAAAAACTTTGCACGGATTTTTTGAAATCTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAAACAACTGCTTTTCCACGTTTTTCAGTACAATAGCGAG</canonical>
            <polymorphic>TTGTCTGAAAATTGTGATTTTTTGAAAATTTGTCAAATTCCGAGAAAAACAAACTTTTCCAGAACTTTGAAGTTTCATACAATTAGATTTGTAGAAAAGCCCGTTTGGATGAAAATTACAATTTCTGAAAAAATCGAAATTGGTTAAATTTCGAAAACTGCATTTTCACAAATTTCGAATTTTCGAATTTCTAATTTCCTTACCTTCAACCACTGAAATTCCATAAACAAGCTCCAAAAACATTTGAAAAACATTCGGATCGATATCCTTCAATTCGATTTCCGACTTTCCAGATTCCGAGAAGTTTCCATTAAAAAGAGATTTGAAATATGTCGAATGAAAGCTGAGCAACATTTTGGAGACGAAAAACTTCTGGTCCCCAACCACCAAAACGACATCCGACGACTCTTTTGCCACGTCATCAGAAAAATTTTTGGATTCAATCTGCATTATTCCAGTCGTTTCACTGATTCTCACTCGAACTTCCACTGTTGCCGTTYTATTGATTTCATAGTTTGAAAATTCGTTTTTCGAAATGTGCATTGAATAAAAATTCTTCTCATCTTGAGTGAACAAATACGATCCAGTTCGGAATGATTGTCCCCCAACGAGTATATCGAAATTGGTTTTAATTGACCAATCATGAGATTGGAATTTCTCGCAGTTCAGTCCAATGCGTAGATCACCATCTTGATACTTGTACAATTTCACAGCCCTTAAATAAGACTTTTGACTTAATTCGAGGTTAAGGGTCTCAAGAAATTATAAGGAGGCGAGGCATGAGAATTGAGCTCACAACTTCAACTCGTCAAGGGGCTTACCTACAGTACCGGTCAATGAGATATACAAGAACTATTTTTCAGTAGATTTTCGGCAATTTCGATCATTTCAGGAGTCATTAAAAACTTTGCACGGATTTTTTGAAATCTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAAACAACTGCTTTTCCACGTTTTTCAGTACAATAGCGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATGTCGAATGAAAGCTGAG</pcr_primer_p1>
		<pcr_primer_p2>TGTTCACTCAAGATGAGAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATATGTCGAATGAAAGCTGAGCAACATTTTGGAGACGAAAAACTTCTGGTCCCCAACCACCAAAACGACATCCGACGACTCTTTTGCCACGTCATCAGAAAAATTTTTGGATTCAATCTGCATTATTCCAGTCGTTTCACTGATTCTCACTCGAACTTCCACTGTTGCCGTTTTATTGATTTCATAGTTTGAAAATTCGTTTTTCGAAATGTGCATTGAATAAAAATTCTTCTCATCTTGAGTGAACA</canonical_amplicon>
		<polymorphic_amplicon>AATATGTCGAATGAAAGCTGAGCAACATTTTGGAGACGAAAAACTTCTGGTCCCCAACCACCAAAACGACATCCGACGACTCTTTTGCCACGTCATCAGAAAAATTTTTGGATTCAATCTGCATTATTCCAGTCGTTTCACTGATTCTCACTCGAACTTCCACTGTTGCCGTTYTATTGATTTCATAGTTTGAAAATTCGTTTTTCGAAATGTGCATTGAATAAAAATTCTTCTCATCTTGAGTGAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34938</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>118862</contig_pos>
        <strand>+</strand>
        <context>GTTGCCGTTY[C/T]ATTGATTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTCCAGTCGTTTCACTGATTCTCACTCGAACTTCCACTGTTGCCGTTT</left_flank>
        <right_flank>ATTGATTTCATAGTTTGAAAATTCGTTTTTCGAAATGTGCATTGAATAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCTGAAAATTGTGATTTTTTGAAAATTTGTCAAATTCCGAGAAAAACAAACTTTTCCAGAACTTTGAAGTTTCATACAATTAGATTTGTAGAAAAGCCCGTTTGGATGAAAATTACAATTTCTGAAAAAATCGAAATTGGTTAAATTTCGAAAACTGCATTTTCACAAATTTCGAATTTTCGAATTTCTAATTTCCTTACCTTCAACCACTGAAATTCCATAAACAAGCTCCAAAAACATTTGAAAAACATTCGGATCGATATCCTTCAATTCGATTTCCGACTTTCCAGATTCCGAGAAGTTTCCATTAAAAAGAGATTTGAAATATGTCGAATGAAAGCTGAGCAACATTTTGGAGACGAAAAACTTCTGGTCCCCAACCACCAAAACGACATCCGACGACTCTTTTGCCACGTCATCAGAAAAATTTTTGGATTCAATCTGCATTATTCCAGTCGTTTCACTGATTCTCACTCGAACTTCCACTGTTGCCGTTTTATTGATTTCATAGTTTGAAAATTCGTTTTTCGAAATGTGCATTGAATAAAAATTCTTCTCATCTTGAGTGAACAAATACGATCCAGTTCGGAATGATTGTCCCCCAACGAGTATATCGAAATTGGTTTTAATTGACCAATCATGAGATTGGAATTTCTCGCAGTTCAGTCCAATGCGTAGATCACCATCTTGATACTTGTACAATTTCACAGCCCTTAAATAAGACTTTTGACTTAATTCGAGGTTAAGGGTCTCAAGAAATTATAAGGAGGCGAGGCATGAGAATTGAGCTCACAACTTCAACTCGTCAAGGGGCTTACCTACAGTACCGGTCAATGAGATATACAAGAACTATTTTTCAGTAGATTTTCGGCAATTTCGATCATTTCAGGAGTCATTAAAAACTTTGCACGGATTTTTTGAAATCTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAAACAACTGCTTTTCCACGTTTTTCAGTACAATAGCGAGC</canonical>
            <polymorphic>TGTCTGAAAATTGTGATTTTTTGAAAATTTGTCAAATTCCGAGAAAAACAAACTTTTCCAGAACTTTGAAGTTTCATACAATTAGATTTGTAGAAAAGCCCGTTTGGATGAAAATTACAATTTCTGAAAAAATCGAAATTGGTTAAATTTCGAAAACTGCATTTTCACAAATTTCGAATTTTCGAATTTCTAATTTCCTTACCTTCAACCACTGAAATTCCATAAACAAGCTCCAAAAACATTTGAAAAACATTCGGATCGATATCCTTCAATTCGATTTCCGACTTTCCAGATTCCGAGAAGTTTCCATTAAAAAGAGATTTGAAATATGTCGAATGAAAGCTGAGCAACATTTTGGAGACGAAAAACTTCTGGTCCCCAACCACCAAAACGACATCCGACGACTCTTTTGCCACGTCATCAGAAAAATTTTTGGATTCAATCTGCATTATTCCAGTCGTTTCACTGATTCTCACTCGAACTTCCACTGTTGCCGTTTYATTGATTTCATAGTTTGAAAATTCGTTTTTCGAAATGTGCATTGAATAAAAATTCTTCTCATCTTGAGTGAACAAATACGATCCAGTTCGGAATGATTGTCCCCCAACGAGTATATCGAAATTGGTTTTAATTGACCAATCATGAGATTGGAATTTCTCGCAGTTCAGTCCAATGCGTAGATCACCATCTTGATACTTGTACAATTTCACAGCCCTTAAATAAGACTTTTGACTTAATTCGAGGTTAAGGGTCTCAAGAAATTATAAGGAGGCGAGGCATGAGAATTGAGCTCACAACTTCAACTCGTCAAGGGGCTTACCTACAGTACCGGTCAATGAGATATACAAGAACTATTTTTCAGTAGATTTTCGGCAATTTCGATCATTTCAGGAGTCATTAAAAACTTTGCACGGATTTTTTGAAATCTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAAACAACTGCTTTTCCACGTTTTTCAGTACAATAGCGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATGTCGAATGAAAGCTGAG</pcr_primer_p1>
		<pcr_primer_p2>TGTTCACTCAAGATGAGAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATATGTCGAATGAAAGCTGAGCAACATTTTGGAGACGAAAAACTTCTGGTCCCCAACCACCAAAACGACATCCGACGACTCTTTTGCCACGTCATCAGAAAAATTTTTGGATTCAATCTGCATTATTCCAGTCGTTTCACTGATTCTCACTCGAACTTCCACTGTTGCCGTTTTATTGATTTCATAGTTTGAAAATTCGTTTTTCGAAATGTGCATTGAATAAAAATTCTTCTCATCTTGAGTGAACA</canonical_amplicon>
		<polymorphic_amplicon>AATATGTCGAATGAAAGCTGAGCAACATTTTGGAGACGAAAAACTTCTGGTCCCCAACCACCAAAACGACATCCGACGACTCTTTTGCCACGTCATCAGAAAAATTTTTGGATTCAATCTGCATTATTCCAGTCGTTTCACTGATTCTCACTCGAACTTCCACTGTTGCCGTTTYATTGATTTCATAGTTTGAAAATTCGTTTTTCGAAATGTGCATTGAATAAAAATTCTTCTCATCTTGAGTGAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34939</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>118965</contig_pos>
        <strand>+</strand>
        <context>ATGATTGTCC[A/C]CCAACGAGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCTTCTCATCTTGAGTGAACAAATACGATCCAGTTCGGAATGATTGTCC</left_flank>
        <right_flank>CCAACGAGTATATCGAAATTGGTTTTAATTGACCAATCATGAGATTGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGATGAAAATTACAATTTCTGAAAAAATCGAAATTGGTTAAATTTCGAAAACTGCATTTTCACAAATTTCGAATTTTCGAATTTCTAATTTCCTTACCTTCAACCACTGAAATTCCATAAACAAGCTCCAAAAACATTTGAAAAACATTCGGATCGATATCCTTCAATTCGATTTCCGACTTTCCAGATTCCGAGAAGTTTCCATTAAAAAGAGATTTGAAATATGTCGAATGAAAGCTGAGCAACATTTTGGAGACGAAAAACTTCTGGTCCCCAACCACCAAAACGACATCCGACGACTCTTTTGCCACGTCATCAGAAAAATTTTTGGATTCAATCTGCATTATTCCAGTCGTTTCACTGATTCTCACTCGAACTTCCACTGTTGCCGTTTTATTGATTTCATAGTTTGAAAATTCGTTTTTCGAAATGTGCATTGAATAAAAATTCTTCTCATCTTGAGTGAACAAATACGATCCAGTTCGGAATGATTGTCCCCCAACGAGTATATCGAAATTGGTTTTAATTGACCAATCATGAGATTGGAATTTCTCGCAGTTCAGTCCAATGCGTAGATCACCATCTTGATACTTGTACAATTTCACAGCCCTTAAATAAGACTTTTGACTTAATTCGAGGTTAAGGGTCTCAAGAAATTATAAGGAGGCGAGGCATGAGAATTGAGCTCACAACTTCAACTCGTCAAGGGGCTTACCTACAGTACCGGTCAATGAGATATACAAGAACTATTTTTCAGTAGATTTTCGGCAATTTCGATCATTTCAGGAGTCATTAAAAACTTTGCACGGATTTTTTGAAATCTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAAACAACTGCTTTTCCACGTTTTTCAGTACAATAGCGAGCCAAAAAAGGTGTACGTCTGAAATCGGAAAATTGCTGAAAAGCTAGAAACTTTCGAAAAGTTTTGTAAATGCAAAGTTCCCAGTGTGGATCTGATTCACACCCT</canonical>
            <polymorphic>TTGGATGAAAATTACAATTTCTGAAAAAATCGAAATTGGTTAAATTTCGAAAACTGCATTTTCACAAATTTCGAATTTTCGAATTTCTAATTTCCTTACCTTCAACCACTGAAATTCCATAAACAAGCTCCAAAAACATTTGAAAAACATTCGGATCGATATCCTTCAATTCGATTTCCGACTTTCCAGATTCCGAGAAGTTTCCATTAAAAAGAGATTTGAAATATGTCGAATGAAAGCTGAGCAACATTTTGGAGACGAAAAACTTCTGGTCCCCAACCACCAAAACGACATCCGACGACTCTTTTGCCACGTCATCAGAAAAATTTTTGGATTCAATCTGCATTATTCCAGTCGTTTCACTGATTCTCACTCGAACTTCCACTGTTGCCGTTTTATTGATTTCATAGTTTGAAAATTCGTTTTTCGAAATGTGCATTGAATAAAAATTCTTCTCATCTTGAGTGAACAAATACGATCCAGTTCGGAATGATTGTCCMCCAACGAGTATATCGAAATTGGTTTTAATTGACCAATCATGAGATTGGAATTTCTCGCAGTTCAGTCCAATGCGTAGATCACCATCTTGATACTTGTACAATTTCACAGCCCTTAAATAAGACTTTTGACTTAATTCGAGGTTAAGGGTCTCAAGAAATTATAAGGAGGCGAGGCATGAGAATTGAGCTCACAACTTCAACTCGTCAAGGGGCTTACCTACAGTACCGGTCAATGAGATATACAAGAACTATTTTTCAGTAGATTTTCGGCAATTTCGATCATTTCAGGAGTCATTAAAAACTTTGCACGGATTTTTTGAAATCTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAAACAACTGCTTTTCCACGTTTTTCAGTACAATAGCGAGCCAAAAAAGGTGTACGTCTGAAATCGGAAAATTGCTGAAAAGCTAGAAACTTTCGAAAAGTTTTGTAAATGCAAAGTTCCCAGTGTGGATCTGATTCACACCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCTTCTCATCTTGAGTGAAC</pcr_primer_p1>
		<pcr_primer_p2>AAGTTGTGAGCTCAATTCTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTCTTCTCATCTTGAGTGAACAAATACGATCCAGTTCGGAATGATTGTCCCCCAACGAGTATATCGAAATTGGTTTTAATTGACCAATCATGAGATTGGAATTTCTCGCAGTTCAGTCCAATGCGTAGATCACCATCTTGATACTTGTACAATTTCACAGCCCTTAAATAAGACTTTTGACTTAATTCGAGGTTAAGGGTCTCAAGAAATTATAAGGAGGCGAGGCATGAGAATTGAGCTCACAACTT</canonical_amplicon>
		<polymorphic_amplicon>AATTCTTCTCATCTTGAGTGAACAAATACGATCCAGTTCGGAATGATTGTCCMCCAACGAGTATATCGAAATTGGTTTTAATTGACCAATCATGAGATTGGAATTTCTCGCAGTTCAGTCCAATGCGTAGATCACCATCTTGATACTTGTACAATTTCACAGCCCTTAAATAAGACTTTTGACTTAATTCGAGGTTAAGGGTCTCAAGAAATTATAAGGAGGCGAGGCATGAGAATTGAGCTCACAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34940</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>119053</contig_pos>
        <strand>+</strand>
        <context>ATCACCATCT[A/T]GATACTTGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATGAGATTGGAATTTCTCGCAGTTCAGTCCAATGCGTAGATCACCATCT</left_flank>
        <right_flank>GATACTTGTACAATTTCACAGCCCTTAAATAAGACTTTTGACTTAATTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTCCTTACCTTCAACCACTGAAATTCCATAAACAAGCTCCAAAAACATTTGAAAAACATTCGGATCGATATCCTTCAATTCGATTTCCGACTTTCCAGATTCCGAGAAGTTTCCATTAAAAAGAGATTTGAAATATGTCGAATGAAAGCTGAGCAACATTTTGGAGACGAAAAACTTCTGGTCCCCAACCACCAAAACGACATCCGACGACTCTTTTGCCACGTCATCAGAAAAATTTTTGGATTCAATCTGCATTATTCCAGTCGTTTCACTGATTCTCACTCGAACTTCCACTGTTGCCGTTTTATTGATTTCATAGTTTGAAAATTCGTTTTTCGAAATGTGCATTGAATAAAAATTCTTCTCATCTTGAGTGAACAAATACGATCCAGTTCGGAATGATTGTCCCCCAACGAGTATATCGAAATTGGTTTTAATTGACCAATCATGAGATTGGAATTTCTCGCAGTTCAGTCCAATGCGTAGATCACCATCTTGATACTTGTACAATTTCACAGCCCTTAAATAAGACTTTTGACTTAATTCGAGGTTAAGGGTCTCAAGAAATTATAAGGAGGCGAGGCATGAGAATTGAGCTCACAACTTCAACTCGTCAAGGGGCTTACCTACAGTACCGGTCAATGAGATATACAAGAACTATTTTTCAGTAGATTTTCGGCAATTTCGATCATTTCAGGAGTCATTAAAAACTTTGCACGGATTTTTTGAAATCTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAAACAACTGCTTTTCCACGTTTTTCAGTACAATAGCGAGCCAAAAAAGGTGTACGTCTGAAATCGGAAAATTGCTGAAAAGCTAGAAACTTTCGAAAAGTTTTGTAAATGCAAAGTTCCCAGTGTGGATCTGATTCACACCCTCCAAAATTTTTAAAAGGATTGGAAACTTGACAGACTAGTTCCAGACTCCTGAAAATGGTCGAAACAACTTTTCTGGACTATTAATCTG</canonical>
            <polymorphic>AATTTCCTTACCTTCAACCACTGAAATTCCATAAACAAGCTCCAAAAACATTTGAAAAACATTCGGATCGATATCCTTCAATTCGATTTCCGACTTTCCAGATTCCGAGAAGTTTCCATTAAAAAGAGATTTGAAATATGTCGAATGAAAGCTGAGCAACATTTTGGAGACGAAAAACTTCTGGTCCCCAACCACCAAAACGACATCCGACGACTCTTTTGCCACGTCATCAGAAAAATTTTTGGATTCAATCTGCATTATTCCAGTCGTTTCACTGATTCTCACTCGAACTTCCACTGTTGCCGTTTTATTGATTTCATAGTTTGAAAATTCGTTTTTCGAAATGTGCATTGAATAAAAATTCTTCTCATCTTGAGTGAACAAATACGATCCAGTTCGGAATGATTGTCCCCCAACGAGTATATCGAAATTGGTTTTAATTGACCAATCATGAGATTGGAATTTCTCGCAGTTCAGTCCAATGCGTAGATCACCATCTWGATACTTGTACAATTTCACAGCCCTTAAATAAGACTTTTGACTTAATTCGAGGTTAAGGGTCTCAAGAAATTATAAGGAGGCGAGGCATGAGAATTGAGCTCACAACTTCAACTCGTCAAGGGGCTTACCTACAGTACCGGTCAATGAGATATACAAGAACTATTTTTCAGTAGATTTTCGGCAATTTCGATCATTTCAGGAGTCATTAAAAACTTTGCACGGATTTTTTGAAATCTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAAACAACTGCTTTTCCACGTTTTTCAGTACAATAGCGAGCCAAAAAAGGTGTACGTCTGAAATCGGAAAATTGCTGAAAAGCTAGAAACTTTCGAAAAGTTTTGTAAATGCAAAGTTCCCAGTGTGGATCTGATTCACACCCTCCAAAATTTTTAAAAGGATTGGAAACTTGACAGACTAGTTCCAGACTCCTGAAAATGGTCGAAACAACTTTTCTGGACTATTAATCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTCATCTTGAGTGAACAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTGTGAGCTCAATTCTCAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTTCTCATCTTGAGTGAACAAATACGATCCAGTTCGGAATGATTGTCCCCCAACGAGTATATCGAAATTGGTTTTAATTGACCAATCATGAGATTGGAATTTCTCGCAGTTCAGTCCAATGCGTAGATCACCATCTTGATACTTGTACAATTTCACAGCCCTTAAATAAGACTTTTGACTTAATTCGAGGTTAAGGGTCTCAAGAAATTATAAGGAGGCGAGGCATGAGAATTGAGCTCACAACTT</canonical_amplicon>
		<polymorphic_amplicon>CTTCTCATCTTGAGTGAACAAATACGATCCAGTTCGGAATGATTGTCCCCCAACGAGTATATCGAAATTGGTTTTAATTGACCAATCATGAGATTGGAATTTCTCGCAGTTCAGTCCAATGCGTAGATCACCATCTWGATACTTGTACAATTTCACAGCCCTTAAATAAGACTTTTGACTTAATTCGAGGTTAAGGGTCTCAAGAAATTATAAGGAGGCGAGGCATGAGAATTGAGCTCACAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34941</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>119088</contig_pos>
        <strand>+</strand>
        <context>TTAAATAAGA[C/T]TTTTGACTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTAGATCACCATCTTGATACTTGTACAATTTCACAGCCCTTAAATAAGA</left_flank>
        <right_flank>TTTTGACTTAATTCGAGGTTAAGGGTCTCAAGAAATTATAAGGAGGCGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGCTCCAAAAACATTTGAAAAACATTCGGATCGATATCCTTCAATTCGATTTCCGACTTTCCAGATTCCGAGAAGTTTCCATTAAAAAGAGATTTGAAATATGTCGAATGAAAGCTGAGCAACATTTTGGAGACGAAAAACTTCTGGTCCCCAACCACCAAAACGACATCCGACGACTCTTTTGCCACGTCATCAGAAAAATTTTTGGATTCAATCTGCATTATTCCAGTCGTTTCACTGATTCTCACTCGAACTTCCACTGTTGCCGTTTTATTGATTTCATAGTTTGAAAATTCGTTTTTCGAAATGTGCATTGAATAAAAATTCTTCTCATCTTGAGTGAACAAATACGATCCAGTTCGGAATGATTGTCCCCCAACGAGTATATCGAAATTGGTTTTAATTGACCAATCATGAGATTGGAATTTCTCGCAGTTCAGTCCAATGCGTAGATCACCATCTTGATACTTGTACAATTTCACAGCCCTTAAATAAGACTTTTGACTTAATTCGAGGTTAAGGGTCTCAAGAAATTATAAGGAGGCGAGGCATGAGAATTGAGCTCACAACTTCAACTCGTCAAGGGGCTTACCTACAGTACCGGTCAATGAGATATACAAGAACTATTTTTCAGTAGATTTTCGGCAATTTCGATCATTTCAGGAGTCATTAAAAACTTTGCACGGATTTTTTGAAATCTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAAACAACTGCTTTTCCACGTTTTTCAGTACAATAGCGAGCCAAAAAAGGTGTACGTCTGAAATCGGAAAATTGCTGAAAAGCTAGAAACTTTCGAAAAGTTTTGTAAATGCAAAGTTCCCAGTGTGGATCTGATTCACACCCTCCAAAATTTTTAAAAGGATTGGAAACTTGACAGACTAGTTCCAGACTCCTGAAAATGGTCGAAACAACTTTTCTGGACTATTAATCTGGTATAGGGCGATTTTTTTGAATTTCAAATAGTAAA</canonical>
            <polymorphic>CAAGCTCCAAAAACATTTGAAAAACATTCGGATCGATATCCTTCAATTCGATTTCCGACTTTCCAGATTCCGAGAAGTTTCCATTAAAAAGAGATTTGAAATATGTCGAATGAAAGCTGAGCAACATTTTGGAGACGAAAAACTTCTGGTCCCCAACCACCAAAACGACATCCGACGACTCTTTTGCCACGTCATCAGAAAAATTTTTGGATTCAATCTGCATTATTCCAGTCGTTTCACTGATTCTCACTCGAACTTCCACTGTTGCCGTTTTATTGATTTCATAGTTTGAAAATTCGTTTTTCGAAATGTGCATTGAATAAAAATTCTTCTCATCTTGAGTGAACAAATACGATCCAGTTCGGAATGATTGTCCCCCAACGAGTATATCGAAATTGGTTTTAATTGACCAATCATGAGATTGGAATTTCTCGCAGTTCAGTCCAATGCGTAGATCACCATCTTGATACTTGTACAATTTCACAGCCCTTAAATAAGAYTTTTGACTTAATTCGAGGTTAAGGGTCTCAAGAAATTATAAGGAGGCGAGGCATGAGAATTGAGCTCACAACTTCAACTCGTCAAGGGGCTTACCTACAGTACCGGTCAATGAGATATACAAGAACTATTTTTCAGTAGATTTTCGGCAATTTCGATCATTTCAGGAGTCATTAAAAACTTTGCACGGATTTTTTGAAATCTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAAACAACTGCTTTTCCACGTTTTTCAGTACAATAGCGAGCCAAAAAAGGTGTACGTCTGAAATCGGAAAATTGCTGAAAAGCTAGAAACTTTCGAAAAGTTTTGTAAATGCAAAGTTCCCAGTGTGGATCTGATTCACACCCTCCAAAATTTTTAAAAGGATTGGAAACTTGACAGACTAGTTCCAGACTCCTGAAAATGGTCGAAACAACTTTTCTGGACTATTAATCTGGTATAGGGCGATTTTTTTGAATTTCAAATAGTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTCATCTTGAGTGAACAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTGTGAGCTCAATTCTCAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTTCTCATCTTGAGTGAACAAATACGATCCAGTTCGGAATGATTGTCCCCCAACGAGTATATCGAAATTGGTTTTAATTGACCAATCATGAGATTGGAATTTCTCGCAGTTCAGTCCAATGCGTAGATCACCATCTTGATACTTGTACAATTTCACAGCCCTTAAATAAGACTTTTGACTTAATTCGAGGTTAAGGGTCTCAAGAAATTATAAGGAGGCGAGGCATGAGAATTGAGCTCACAACTT</canonical_amplicon>
		<polymorphic_amplicon>CTTCTCATCTTGAGTGAACAAATACGATCCAGTTCGGAATGATTGTCCCCCAACGAGTATATCGAAATTGGTTTTAATTGACCAATCATGAGATTGGAATTTCTCGCAGTTCAGTCCAATGCGTAGATCACCATCTTGATACTTGTACAATTTCACAGCCCTTAAATAAGAYTTTTGACTTAATTCGAGGTTAAGGGTCTCAAGAAATTATAAGGAGGCGAGGCATGAGAATTGAGCTCACAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34942</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>121293</contig_pos>
        <strand>+</strand>
        <context>AAGAAATTGA[G/T]AAAAAAWTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCAATAGATAGTTTAGCGTTAGAATTTTCTCATGAAGCTAAGAAATTGA</left_flank>
        <right_flank>AAAAAATTGTGGTTTTTTAAAACAATATTTGACTTTTAACATAATATCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAGAACAAATTGTTTCTCAACTTTTATTCAATCAACAGTATACATTCCTTCACAAAATAGCCAAATTGTCTTCAAATTCGAACGAAATTTGGGGAAAAATTACCAAAAAATGGCTTGAATAAAAAACCATGAAAAAACTGTGCGGCGCCTTTGCACGCCCACAAAACCGCGCCTCAAAAAGGGGCGGAGCGTCTCGACAGGTTGTTTACTTCTTTGTATGTGCGTTCATCCGCGCGATTGTTTTGAATTGACAATAGTAAACAGCACGTTTGAAGGTGACGAGAAGGAAAAATTAAAAAAATGAGAAAACATTTTTTAAAGTTTAAAACTAAAAATGTGATAACATGTGAAAGTTGAAAATCAGAAATTGGATTCAGGAAGTCCTTGTATTGATAAAGTGATAGTGGTTTTCAATAATTCACACAAATTTTGATTTTGAGTTTTGTTCTCAATAGATAGTTTAGCGTTAGAATTTTCTCATGAAGCTAAGAAATTGAAAAAAAATTGTGGTTTTTTAAAACAATATTTGACTTTTAACATAATATCAGAAAAGGTTTAGATGCCGCATAAATAAGAACATTTGTCATCCATTTCTGGAAACTTCCGGGTTTTGAAAAATGTCTTCAATTTCCTCCAAAATGGACACTTTTTTGTTTTCAGAACTATTCTGTAGGTGGTCTAGAAATGGCGGGAACTCAAAAACACGTCTTCTAGACATTTCTAGATTATCAAAGTTTACTCGACAAACAGTGACAGTAGTCGACAGCAAAATGGTGTCAGCAGCGGTAGTGTGGATGAATATTGAGTAGTTTGCAAATCAGTTTGCGCATCAATAATAAAACTGTCAGAAACAATAAAACAGATCAAATGAAGTAACTATAACAAAACAGATCAAATGAAGTAACTGCAAAAGTCATTTGTTTTTGCAAAAGTCATTTGTTTTCAGAATTTTCAAAAAATTCAGGATGGCATACACTTCATACTTTGAAGCACTGGAA</canonical>
            <polymorphic>ATCAGAACAAATTGTTTCTCAACTTTTATTCAATCAACAGTATACATTCCTTCACAAAATAGCCAAATTGTCTTCAAATTCGAACGAAATTTGGGGAAAAATTACCAAAAAATGGCTTGAATAAAAAACCATGAAAAAACTGTGCGGCGCCTTTGCACGCCCACAAAACCGCGCCTCAAAAAGGGGCGGAGCGTCTCGACAGGTTGTTTACTTCTTTGTATGTGCGTTCATCCGCGCGATTGTTTTGAATTGACAATAGTAAACAGCACGTTTGAAGGTGACGAGAAGGAAAAATTAAAAAAATGAGAAAACATTTTTTAAAGTTTAAAACTAAAAATGTGATAACATGTGAAAGTTGAAAATCAGAAATTGGATTCAGGAAGTCCTTGTATTGATAAAGTGATAGTGGTTTTCAATAATTCACACAAATTTTGATTTTGAGTTTTGTTCTCAATAGATAGTTTAGCGTTAGAATTTTCTCATGAAGCTAAGAAATTGAKAAAAAATTGTGGTTTTTTAAAACAATATTTGACTTTTAACATAATATCAGAAAAGGTTTAGATGCCGCATAAATAAGAACATTTGTCATCCATTTCTGGAAACTTCCGGGTTTTGAAAAATGTCTTCAATTTCCTCCAAAATGGACACTTTTTTGTTTTCAGAACTATTCTGTAGGTGGTCTAGAAATGGCGGGAACTCAAAAACACGTCTTCTAGACATTTCTAGATTATCAAAGTTTACTCGACAAACAGTGACAGTAGTCGACAGCAAAATGGTGTCAGCAGCGGTAGTGTGGATGAATATTGAGTAGTTTGCAAATCAGTTTGCGCATCAATAATAAAACTGTCAGAAACAATAAAACAGATCAAATGAAGTAACTATAACAAAACAGATCAAATGAAGTAACTGCAAAAGTCATTTGTTTTTGCAAAAGTCATTTGTTTTCAGAATTTTCAAAAAATTCAGGATGGCATACACTTCATACTTTGAAGCACTGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTGAAAGTTGAAAATCAGAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAATGGATGACAAATGTTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGTGAAAGTTGAAAATCAGAAATTGGATTCAGGAAGTCCTTGTATTGATAAAGTGATAGTGGTTTTCAATAATTCACACAAATTTTGATTTTGAGTTTTGTTCTCAATAGATAGTTTAGCGTTAGAATTTTCTCATGAAGCTAAGAAATTGAAAAAAAATTGTGGTTTTTTAAAACAATATTTGACTTTTAACATAATATCAGAAAAGGTTTAGATGCCGCATAAATAAGAACATTTGTCATCCATTTC</canonical_amplicon>
		<polymorphic_amplicon>ATGTGAAAGTTGAAAATCAGAAATTGGATTCAGGAAGTCCTTGTATTGATAAAGTGATAGTGGTTTTCAATAATTCACACAAATTTTGATTTTGAGTTTTGTTCTCAATAGATAGTTTAGCGTTAGAATTTTCTCATGAAGCTAAGAAATTGAKAAAAAATTGTGGTTTTTTAAAACAATATTTGACTTTTAACATAATATCAGAAAAGGTTTAGATGCCGCATAAATAAGAACATTTGTCATCCATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34943</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>121300</contig_pos>
        <strand>+</strand>
        <context>TGAKAAAAAA[A/T]TGTGGTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATAGTTTAGCGTTAGAATTTTCTCATGAAGCTAAGAAATTGAAAAAAAA</left_flank>
        <right_flank>TGTGGTTTTTTAAAACAATATTTGACTTTTAACATAATATCAGAAAAGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAATTGTTTCTCAACTTTTATTCAATCAACAGTATACATTCCTTCACAAAATAGCCAAATTGTCTTCAAATTCGAACGAAATTTGGGGAAAAATTACCAAAAAATGGCTTGAATAAAAAACCATGAAAAAACTGTGCGGCGCCTTTGCACGCCCACAAAACCGCGCCTCAAAAAGGGGCGGAGCGTCTCGACAGGTTGTTTACTTCTTTGTATGTGCGTTCATCCGCGCGATTGTTTTGAATTGACAATAGTAAACAGCACGTTTGAAGGTGACGAGAAGGAAAAATTAAAAAAATGAGAAAACATTTTTTAAAGTTTAAAACTAAAAATGTGATAACATGTGAAAGTTGAAAATCAGAAATTGGATTCAGGAAGTCCTTGTATTGATAAAGTGATAGTGGTTTTCAATAATTCACACAAATTTTGATTTTGAGTTTTGTTCTCAATAGATAGTTTAGCGTTAGAATTTTCTCATGAAGCTAAGAAATTGAAAAAAAATTGTGGTTTTTTAAAACAATATTTGACTTTTAACATAATATCAGAAAAGGTTTAGATGCCGCATAAATAAGAACATTTGTCATCCATTTCTGGAAACTTCCGGGTTTTGAAAAATGTCTTCAATTTCCTCCAAAATGGACACTTTTTTGTTTTCAGAACTATTCTGTAGGTGGTCTAGAAATGGCGGGAACTCAAAAACACGTCTTCTAGACATTTCTAGATTATCAAAGTTTACTCGACAAACAGTGACAGTAGTCGACAGCAAAATGGTGTCAGCAGCGGTAGTGTGGATGAATATTGAGTAGTTTGCAAATCAGTTTGCGCATCAATAATAAAACTGTCAGAAACAATAAAACAGATCAAATGAAGTAACTATAACAAAACAGATCAAATGAAGTAACTGCAAAAGTCATTTGTTTTTGCAAAAGTCATTTGTTTTCAGAATTTTCAAAAAATTCAGGATGGCATACACTTCATACTTTGAAGCACTGGAAGAATGTC</canonical>
            <polymorphic>CAAATTGTTTCTCAACTTTTATTCAATCAACAGTATACATTCCTTCACAAAATAGCCAAATTGTCTTCAAATTCGAACGAAATTTGGGGAAAAATTACCAAAAAATGGCTTGAATAAAAAACCATGAAAAAACTGTGCGGCGCCTTTGCACGCCCACAAAACCGCGCCTCAAAAAGGGGCGGAGCGTCTCGACAGGTTGTTTACTTCTTTGTATGTGCGTTCATCCGCGCGATTGTTTTGAATTGACAATAGTAAACAGCACGTTTGAAGGTGACGAGAAGGAAAAATTAAAAAAATGAGAAAACATTTTTTAAAGTTTAAAACTAAAAATGTGATAACATGTGAAAGTTGAAAATCAGAAATTGGATTCAGGAAGTCCTTGTATTGATAAAGTGATAGTGGTTTTCAATAATTCACACAAATTTTGATTTTGAGTTTTGTTCTCAATAGATAGTTTAGCGTTAGAATTTTCTCATGAAGCTAAGAAATTGAAAAAAAAWTGTGGTTTTTTAAAACAATATTTGACTTTTAACATAATATCAGAAAAGGTTTAGATGCCGCATAAATAAGAACATTTGTCATCCATTTCTGGAAACTTCCGGGTTTTGAAAAATGTCTTCAATTTCCTCCAAAATGGACACTTTTTTGTTTTCAGAACTATTCTGTAGGTGGTCTAGAAATGGCGGGAACTCAAAAACACGTCTTCTAGACATTTCTAGATTATCAAAGTTTACTCGACAAACAGTGACAGTAGTCGACAGCAAAATGGTGTCAGCAGCGGTAGTGTGGATGAATATTGAGTAGTTTGCAAATCAGTTTGCGCATCAATAATAAAACTGTCAGAAACAATAAAACAGATCAAATGAAGTAACTATAACAAAACAGATCAAATGAAGTAACTGCAAAAGTCATTTGTTTTTGCAAAAGTCATTTGTTTTCAGAATTTTCAAAAAATTCAGGATGGCATACACTTCATACTTTGAAGCACTGGAAGAATGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>321 148 123 75 56 50 48 45 45 21 12 11 11 11 11 10 2</canonical_bands>
                <polymorphic_bands>321 148 134 75 56 50 48 45 45 21 12 11 11 11 10 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTGAAAGTTGAAAATCAGAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAATGGATGACAAATGTTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGTGAAAGTTGAAAATCAGAAATTGGATTCAGGAAGTCCTTGTATTGATAAAGTGATAGTGGTTTTCAATAATTCACACAAATTTTGATTTTGAGTTTTGTTCTCAATAGATAGTTTAGCGTTAGAATTTTCTCATGAAGCTAAGAAATTGAAAAAAAATTGTGGTTTTTTAAAACAATATTTGACTTTTAACATAATATCAGAAAAGGTTTAGATGCCGCATAAATAAGAACATTTGTCATCCATTTC</canonical_amplicon>
		<polymorphic_amplicon>ATGTGAAAGTTGAAAATCAGAAATTGGATTCAGGAAGTCCTTGTATTGATAAAGTGATAGTGGTTTTCAATAATTCACACAAATTTTGATTTTGAGTTTTGTTCTCAATAGATAGTTTAGCGTTAGAATTTTCTCATGAAGCTAAGAAATTGAAAAAAAAWTGTGGTTTTTTAAAACAATATTTGACTTTTAACATAATATCAGAAAAGGTTTAGATGCCGCATAAATAAGAACATTTGTCATCCATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34944</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>121338</contig_pos>
        <strand></strand>
        <context>TTTAACATAA[T/C]YTCAGAAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTGAAAAAAAATTGTGGTTTTTTAAAACAATATTTGACTTTTAACATAA</left_flank>
        <right_flank>ATCAGAAAAGGTTTAGATGCCGCATAAATAAGAACATTTGTCATCCATTT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCCTTCACAAAATAGCCAAATTGTCTTCAAATTCGAACGAAATTTGGGGAAAAATTACCAAAAAATGGCTTGAATAAAAAACCATGAAAAAACTGTGCGGCGCCTTTGCACGCCCACAAAACCGCGCCTCAAAAAGGGGCGGAGCGTCTCGACAGGTTGTTTACTTCTTTGTATGTGCGTTCATCCGCGCGATTGTTTTGAATTGACAATAGTAAACAGCACGTTTGAAGGTGACGAGAAGGAAAAATTAAAAAAATGAGAAAACATTTTTTAAAGTTTAAAACTAAAAATGTGATAACATGTGAAAGTTGAAAATCAGAAATTGGATTCAGGAAGTCCTTGTATTGATAAAGTGATAGTGGTTTTCAATAATTCACACAAATTTTGATTTTGAGTTTTGTTCTCAATAGATAGTTTAGCGTTAGAATTTTCTCATGAAGCTAAGAAATTGAAAAAAAATTGTGGTTTTTTAAAACAATATTTGACTTTTAACATAATATCAGAAAAGGTTTAGATGCCGCATAAATAAGAACATTTGTCATCCATTTCTGGAAACTTCCGGGTTTTGAAAAATGTCTTCAATTTCCTCCAAAATGGACACTTTTTTGTTTTCAGAACTATTCTGTAGGTGGTCTAGAAATGGCGGGAACTCAAAAACACGTCTTCTAGACATTTCTAGATTATCAAAGTTTACTCGACAAACAGTGACAGTAGTCGACAGCAAAATGGTGTCAGCAGCGGTAGTGTGGATGAATATTGAGTAGTTTGCAAATCAGTTTGCGCATCAATAATAAAACTGTCAGAAACAATAAAACAGATCAAATGAAGTAACTATAACAAAACAGATCAAATGAAGTAACTGCAAAAGTCATTTGTTTTTGCAAAAGTCATTTGTTTTCAGAATTTTCAAAAAATTCAGGATGGCATACACTTCATACTTTGAAGCACTGGAAGAATGTCAGCTAAGTTCCTTGGAGTATCGCAGGCTCTATAATGAT</canonical>
            <polymorphic>ATTCCTTCACAAAATAGCCAAATTGTCTTCAAATTCGAACGAAATTTGGGGAAAAATTACCAAAAAATGGCTTGAATAAAAAACCATGAAAAAACTGTGCGGCGCCTTTGCACGCCCACAAAACCGCGCCTCAAAAAGGGGCGGAGCGTCTCGACAGGTTGTTTACTTCTTTGTATGTGCGTTCATCCGCGCGATTGTTTTGAATTGACAATAGTAAACAGCACGTTTGAAGGTGACGAGAAGGAAAAATTAAAAAAATGAGAAAACATTTTTTAAAGTTTAAAACTAAAAATGTGATAACATGTGAAAGTTGAAAATCAGAAATTGGATTCAGGAAGTCCTTGTATTGATAAAGTGATAGTGGTTTTCAATAATTCACACAAATTTTGATTTTGAGTTTTGTTCTCAATAGATAGTTTAGCGTTAGAATTTTCTCATGAAGCTAAGAAATTGAAAAAAAATTGTGGTTTTTTAAAACAATATTTGACTTTTAACATAAYATCAGAAAAGGTTTAGATGCCGCATAAATAAGAACATTTGTCATCCATTTCTGGAAACTTCCGGGTTTTGAAAAATGTCTTCAATTTCCTCCAAAATGGACACTTTTTTGTTTTCAGAACTATTCTGTAGGTGGTCTAGAAATGGCGGGAACTCAAAAACACGTCTTCTAGACATTTCTAGATTATCAAAGTTTACTCGACAAACAGTGACAGTAGTCGACAGCAAAATGGTGTCAGCAGCGGTAGTGTGGATGAATATTGAGTAGTTTGCAAATCAGTTTGCGCATCAATAATAAAACTGTCAGAAACAATAAAACAGATCAAATGAAGTAACTATAACAAAACAGATCAAATGAAGTAACTGCAAAAGTCATTTGTTTTTGCAAAAGTCATTTGTTTTCAGAATTTTCAAAAAATTCAGGATGGCATACACTTCATACTTTGAAGCACTGGAAGAATGTCAGCTAAGTTCCTTGGAGTATCGCAGGCTCTATAATGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTTTCTCATGAAGCTAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCTAGAAGACGTGTTTTTGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAATTTTCTCATGAAGCTAAGAAATTGAAAAAAAATTGTGGTTTTTTAAAACAATATTTGACTTTTAACATAATATCAGAAAAGGTTTAGATGCCGCATAAATAAGAACATTTGTCATCCATTTCTGGAAACTTCCGGGTTTTGAAAAATGTCTTCAATTTCCTCCAAAATGGACACTTTTTTGTTTTCAGAACTATTCTGTAGGTGGTCTAGAAATGGCGGGAACTCAAAAACACGTCTTCTAGA</canonical_amplicon>
		<polymorphic_amplicon>GAATTTTCTCATGAAGCTAAGAAATTGAAAAAAAATTGTGGTTTTTTAAAACAATATTTGACTTTTAACATAAYATCAGAAAAGGTTTAGATGCCGCATAAATAAGAACATTTGTCATCCATTTCTGGAAACTTCCGGGTTTTGAAAAATGTCTTCAATTTCCTCCAAAATGGACACTTTTTTGTTTTCAGAACTATTCTGTAGGTGGTCTAGAAATGGCGGGAACTCAAAAACACGTCTTCTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34945</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>121339</contig_pos>
        <strand>+</strand>
        <context>TTAACATAAY[C/T]TCAGAAAAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGAAAAAAAATTGTGGTTTTTTAAAACAATATTTGACTTTTAACATAAT</left_flank>
        <right_flank>TCAGAAAAGGTTTAGATGCCGCATAAATAAGAACATTTGTCATCCATTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCTTCACAAAATAGCCAAATTGTCTTCAAATTCGAACGAAATTTGGGGAAAAATTACCAAAAAATGGCTTGAATAAAAAACCATGAAAAAACTGTGCGGCGCCTTTGCACGCCCACAAAACCGCGCCTCAAAAAGGGGCGGAGCGTCTCGACAGGTTGTTTACTTCTTTGTATGTGCGTTCATCCGCGCGATTGTTTTGAATTGACAATAGTAAACAGCACGTTTGAAGGTGACGAGAAGGAAAAATTAAAAAAATGAGAAAACATTTTTTAAAGTTTAAAACTAAAAATGTGATAACATGTGAAAGTTGAAAATCAGAAATTGGATTCAGGAAGTCCTTGTATTGATAAAGTGATAGTGGTTTTCAATAATTCACACAAATTTTGATTTTGAGTTTTGTTCTCAATAGATAGTTTAGCGTTAGAATTTTCTCATGAAGCTAAGAAATTGAAAAAAAATTGTGGTTTTTTAAAACAATATTTGACTTTTAACATAATATCAGAAAAGGTTTAGATGCCGCATAAATAAGAACATTTGTCATCCATTTCTGGAAACTTCCGGGTTTTGAAAAATGTCTTCAATTTCCTCCAAAATGGACACTTTTTTGTTTTCAGAACTATTCTGTAGGTGGTCTAGAAATGGCGGGAACTCAAAAACACGTCTTCTAGACATTTCTAGATTATCAAAGTTTACTCGACAAACAGTGACAGTAGTCGACAGCAAAATGGTGTCAGCAGCGGTAGTGTGGATGAATATTGAGTAGTTTGCAAATCAGTTTGCGCATCAATAATAAAACTGTCAGAAACAATAAAACAGATCAAATGAAGTAACTATAACAAAACAGATCAAATGAAGTAACTGCAAAAGTCATTTGTTTTTGCAAAAGTCATTTGTTTTCAGAATTTTCAAAAAATTCAGGATGGCATACACTTCATACTTTGAAGCACTGGAAGAATGTCAGCTAAGTTCCTTGGAGTATCGCAGGCTCTATAATGATT</canonical>
            <polymorphic>TTCCTTCACAAAATAGCCAAATTGTCTTCAAATTCGAACGAAATTTGGGGAAAAATTACCAAAAAATGGCTTGAATAAAAAACCATGAAAAAACTGTGCGGCGCCTTTGCACGCCCACAAAACCGCGCCTCAAAAAGGGGCGGAGCGTCTCGACAGGTTGTTTACTTCTTTGTATGTGCGTTCATCCGCGCGATTGTTTTGAATTGACAATAGTAAACAGCACGTTTGAAGGTGACGAGAAGGAAAAATTAAAAAAATGAGAAAACATTTTTTAAAGTTTAAAACTAAAAATGTGATAACATGTGAAAGTTGAAAATCAGAAATTGGATTCAGGAAGTCCTTGTATTGATAAAGTGATAGTGGTTTTCAATAATTCACACAAATTTTGATTTTGAGTTTTGTTCTCAATAGATAGTTTAGCGTTAGAATTTTCTCATGAAGCTAAGAAATTGAAAAAAAATTGTGGTTTTTTAAAACAATATTTGACTTTTAACATAATYTCAGAAAAGGTTTAGATGCCGCATAAATAAGAACATTTGTCATCCATTTCTGGAAACTTCCGGGTTTTGAAAAATGTCTTCAATTTCCTCCAAAATGGACACTTTTTTGTTTTCAGAACTATTCTGTAGGTGGTCTAGAAATGGCGGGAACTCAAAAACACGTCTTCTAGACATTTCTAGATTATCAAAGTTTACTCGACAAACAGTGACAGTAGTCGACAGCAAAATGGTGTCAGCAGCGGTAGTGTGGATGAATATTGAGTAGTTTGCAAATCAGTTTGCGCATCAATAATAAAACTGTCAGAAACAATAAAACAGATCAAATGAAGTAACTATAACAAAACAGATCAAATGAAGTAACTGCAAAAGTCATTTGTTTTTGCAAAAGTCATTTGTTTTCAGAATTTTCAAAAAATTCAGGATGGCATACACTTCATACTTTGAAGCACTGGAAGAATGTCAGCTAAGTTCCTTGGAGTATCGCAGGCTCTATAATGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTTTCTCATGAAGCTAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCTAGAAGACGTGTTTTTGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAATTTTCTCATGAAGCTAAGAAATTGAAAAAAAATTGTGGTTTTTTAAAACAATATTTGACTTTTAACATAATATCAGAAAAGGTTTAGATGCCGCATAAATAAGAACATTTGTCATCCATTTCTGGAAACTTCCGGGTTTTGAAAAATGTCTTCAATTTCCTCCAAAATGGACACTTTTTTGTTTTCAGAACTATTCTGTAGGTGGTCTAGAAATGGCGGGAACTCAAAAACACGTCTTCTAGA</canonical_amplicon>
		<polymorphic_amplicon>GAATTTTCTCATGAAGCTAAGAAATTGAAAAAAAATTGTGGTTTTTTAAAACAATATTTGACTTTTAACATAATYTCAGAAAAGGTTTAGATGCCGCATAAATAAGAACATTTGTCATCCATTTCTGGAAACTTCCGGGTTTTGAAAAATGTCTTCAATTTCCTCCAAAATGGACACTTTTTTGTTTTCAGAACTATTCTGTAGGTGGTCTAGAAATGGCGGGAACTCAAAAACACGTCTTCTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34946</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>121401</contig_pos>
        <strand>+</strand>
        <context>GGAAACTTCC[A/G]GGTTTTGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAGATGCCGCATAAATAAGAACATTTGTCATCCATTTCTGGAAACTTCC</left_flank>
        <right_flank>GGTTTTGAAAAATGTCTTCAATTTCCTCCAAAATGGACACTTTTTTGTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATGGCTTGAATAAAAAACCATGAAAAAACTGTGCGGCGCCTTTGCACGCCCACAAAACCGCGCCTCAAAAAGGGGCGGAGCGTCTCGACAGGTTGTTTACTTCTTTGTATGTGCGTTCATCCGCGCGATTGTTTTGAATTGACAATAGTAAACAGCACGTTTGAAGGTGACGAGAAGGAAAAATTAAAAAAATGAGAAAACATTTTTTAAAGTTTAAAACTAAAAATGTGATAACATGTGAAAGTTGAAAATCAGAAATTGGATTCAGGAAGTCCTTGTATTGATAAAGTGATAGTGGTTTTCAATAATTCACACAAATTTTGATTTTGAGTTTTGTTCTCAATAGATAGTTTAGCGTTAGAATTTTCTCATGAAGCTAAGAAATTGAAAAAAAATTGTGGTTTTTTAAAACAATATTTGACTTTTAACATAATATCAGAAAAGGTTTAGATGCCGCATAAATAAGAACATTTGTCATCCATTTCTGGAAACTTCCGGGTTTTGAAAAATGTCTTCAATTTCCTCCAAAATGGACACTTTTTTGTTTTCAGAACTATTCTGTAGGTGGTCTAGAAATGGCGGGAACTCAAAAACACGTCTTCTAGACATTTCTAGATTATCAAAGTTTACTCGACAAACAGTGACAGTAGTCGACAGCAAAATGGTGTCAGCAGCGGTAGTGTGGATGAATATTGAGTAGTTTGCAAATCAGTTTGCGCATCAATAATAAAACTGTCAGAAACAATAAAACAGATCAAATGAAGTAACTATAACAAAACAGATCAAATGAAGTAACTGCAAAAGTCATTTGTTTTTGCAAAAGTCATTTGTTTTCAGAATTTTCAAAAAATTCAGGATGGCATACACTTCATACTTTGAAGCACTGGAAGAATGTCAGCTAAGTTCCTTGGAGTATCGCAGGCTCTATAATGATTTGGTCTACACGTATAAAATTATTGTTTCCAAAGAAATTATCATGGAGGTTCCAATTTTCGAA</canonical>
            <polymorphic>AAAATGGCTTGAATAAAAAACCATGAAAAAACTGTGCGGCGCCTTTGCACGCCCACAAAACCGCGCCTCAAAAAGGGGCGGAGCGTCTCGACAGGTTGTTTACTTCTTTGTATGTGCGTTCATCCGCGCGATTGTTTTGAATTGACAATAGTAAACAGCACGTTTGAAGGTGACGAGAAGGAAAAATTAAAAAAATGAGAAAACATTTTTTAAAGTTTAAAACTAAAAATGTGATAACATGTGAAAGTTGAAAATCAGAAATTGGATTCAGGAAGTCCTTGTATTGATAAAGTGATAGTGGTTTTCAATAATTCACACAAATTTTGATTTTGAGTTTTGTTCTCAATAGATAGTTTAGCGTTAGAATTTTCTCATGAAGCTAAGAAATTGAAAAAAAATTGTGGTTTTTTAAAACAATATTTGACTTTTAACATAATATCAGAAAAGGTTTAGATGCCGCATAAATAAGAACATTTGTCATCCATTTCTGGAAACTTCCRGGTTTTGAAAAATGTCTTCAATTTCCTCCAAAATGGACACTTTTTTGTTTTCAGAACTATTCTGTAGGTGGTCTAGAAATGGCGGGAACTCAAAAACACGTCTTCTAGACATTTCTAGATTATCAAAGTTTACTCGACAAACAGTGACAGTAGTCGACAGCAAAATGGTGTCAGCAGCGGTAGTGTGGATGAATATTGAGTAGTTTGCAAATCAGTTTGCGCATCAATAATAAAACTGTCAGAAACAATAAAACAGATCAAATGAAGTAACTATAACAAAACAGATCAAATGAAGTAACTGCAAAAGTCATTTGTTTTTGCAAAAGTCATTTGTTTTCAGAATTTTCAAAAAATTCAGGATGGCATACACTTCATACTTTGAAGCACTGGAAGAATGTCAGCTAAGTTCCTTGGAGTATCGCAGGCTCTATAATGATTTGGTCTACACGTATAAAATTATTGTTTCCAAAGAAATTATCATGGAGGTTCCAATTTTCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTTTCTCATGAAGCTAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCTAGAAGACGTGTTTTTGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAATTTTCTCATGAAGCTAAGAAATTGAAAAAAAATTGTGGTTTTTTAAAACAATATTTGACTTTTAACATAATATCAGAAAAGGTTTAGATGCCGCATAAATAAGAACATTTGTCATCCATTTCTGGAAACTTCCGGGTTTTGAAAAATGTCTTCAATTTCCTCCAAAATGGACACTTTTTTGTTTTCAGAACTATTCTGTAGGTGGTCTAGAAATGGCGGGAACTCAAAAACACGTCTTCTAGA</canonical_amplicon>
		<polymorphic_amplicon>GAATTTTCTCATGAAGCTAAGAAATTGAAAAAAAATTGTGGTTTTTTAAAACAATATTTGACTTTTAACATAATATCAGAAAAGGTTTAGATGCCGCATAAATAAGAACATTTGTCATCCATTTCTGGAAACTTCCRGGTTTTGAAAAATGTCTTCAATTTCCTCCAAAATGGACACTTTTTTGTTTTCAGAACTATTCTGTAGGTGGTCTAGAAATGGCGGGAACTCAAAAACACGTCTTCTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34947</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>121670</contig_pos>
        <strand></strand>
        <context>CAAATGAAGT[A/T]WCTRRAACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCGCATCAATAATAAAACTGTCAGAAACAATAAAACAGATCAAATGAAGT</left_flank>
        <right_flank>ACTATAACAAAACAGATCAAATGAAGTAACTGCAAAAGTCATTTGTTTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGAAGTCCTTGTATTGATAAAGTGATAGTGGTTTTCAATAATTCACACAAATTTTGATTTTGAGTTTTGTTCTCAATAGATAGTTTAGCGTTAGAATTTTCTCATGAAGCTAAGAAATTGAAAAAAAATTGTGGTTTTTTAAAACAATATTTGACTTTTAACATAATATCAGAAAAGGTTTAGATGCCGCATAAATAAGAACATTTGTCATCCATTTCTGGAAACTTCCGGGTTTTGAAAAATGTCTTCAATTTCCTCCAAAATGGACACTTTTTTGTTTTCAGAACTATTCTGTAGGTGGTCTAGAAATGGCGGGAACTCAAAAACACGTCTTCTAGACATTTCTAGATTATCAAAGTTTACTCGACAAACAGTGACAGTAGTCGACAGCAAAATGGTGTCAGCAGCGGTAGTGTGGATGAATATTGAGTAGTTTGCAAATCAGTTTGCGCATCAATAATAAAACTGTCAGAAACAATAAAACAGATCAAATGAAGTAACTATAACAAAACAGATCAAATGAAGTAACTGCAAAAGTCATTTGTTTTTGCAAAAGTCATTTGTTTTCAGAATTTTCAAAAAATTCAGGATGGCATACACTTCATACTTTGAAGCACTGGAAGAATGTCAGCTAAGTTCCTTGGAGTATCGCAGGCTCTATAATGATTTGGTCTACACGTATAAAATTATTGTTTCCAAAGAAATTATCATGGAGGTTCCAATTTTCGAAATATTTAATTATGTTGGATCATTGCGACGTCGCAAATACTATCTCAAATCACTTATCAAAAACTCAACAAAAATATCTTCTCAATTTCTCTCTAATAGAGTAATCAGATGTTGGAACTCTTTACCCGCCAATGTGTTTCCGGTGAAGCCCTCGTCAGCGGCTTTCAAAAATCGACTATTATCCTGTGATCTAAAACATTTCCTTGTCTTGAATTCAACTAATTACTAACTCGGTTTTTCCTTCATCTCCCAATTACTACAAATGTATGT</canonical>
            <polymorphic>AGGAAGTCCTTGTATTGATAAAGTGATAGTGGTTTTCAATAATTCACACAAATTTTGATTTTGAGTTTTGTTCTCAATAGATAGTTTAGCGTTAGAATTTTCTCATGAAGCTAAGAAATTGAAAAAAAATTGTGGTTTTTTAAAACAATATTTGACTTTTAACATAATATCAGAAAAGGTTTAGATGCCGCATAAATAAGAACATTTGTCATCCATTTCTGGAAACTTCCGGGTTTTGAAAAATGTCTTCAATTTCCTCCAAAATGGACACTTTTTTGTTTTCAGAACTATTCTGTAGGTGGTCTAGAAATGGCGGGAACTCAAAAACACGTCTTCTAGACATTTCTAGATTATCAAAGTTTACTCGACAAACAGTGACAGTAGTCGACAGCAAAATGGTGTCAGCAGCGGTAGTGTGGATGAATATTGAGTAGTTTGCAAATCAGTTTGCGCATCAATAATAAAACTGTCAGAAACAATAAAACAGATCAAATGAAGTWACTATAACAAAACAGATCAAATGAAGTAACTGCAAAAGTCATTTGTTTTTGCAAAAGTCATTTGTTTTCAGAATTTTCAAAAAATTCAGGATGGCATACACTTCATACTTTGAAGCACTGGAAGAATGTCAGCTAAGTTCCTTGGAGTATCGCAGGCTCTATAATGATTTGGTCTACACGTATAAAATTATTGTTTCCAAAGAAATTATCATGGAGGTTCCAATTTTCGAAATATTTAATTATGTTGGATCATTGCGACGTCGCAAATACTATCTCAAATCACTTATCAAAAACTCAACAAAAATATCTTCTCAATTTCTCTCTAATAGAGTAATCAGATGTTGGAACTCTTTACCCGCCAATGTGTTTCCGGTGAAGCCCTCGTCAGCGGCTTTCAAAAATCGACTATTATCCTGTGATCTAAAACATTTCCTTGTCTTGAATTCAACTAATTACTAACTCGGTTTTTCCTTCATCTCCCAATTACTACAAATGTATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACTCGACAAACAGTGACAGTA</pcr_primer_p1>
		<pcr_primer_p2>AGTATGAAGTGTATGCCATCCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTACTCGACAAACAGTGACAGTAGTCGACAGCAAAATGGTGTCAGCAGCGGTAGTGTGGATGAATATTGAGTAGTTTGCAAATCAGTTTGCGCATCAATAATAAAACTGTCAGAAACAATAAAACAGATCAAATGAAGTAACTATAACAAAACAGATCAAATGAAGTAACTGCAAAAGTCATTTGTTTTTGCAAAAGTCATTTGTTTTCAGAATTTTCAAAAAATTCAGGATGGCATACACTTCATACT</canonical_amplicon>
		<polymorphic_amplicon>TTACTCGACAAACAGTGACAGTAGTCGACAGCAAAATGGTGTCAGCAGCGGTAGTGTGGATGAATATTGAGTAGTTTGCAAATCAGTTTGCGCATCAATAATAAAACTGTCAGAAACAATAAAACAGATCAAATGAAGTWACTATAACAAAACAGATCAAATGAAGTAACTGCAAAAGTCATTTGTTTTTGCAAAAGTCATTTGTTTTCAGAATTTTCAAAAAATTCAGGATGGCATACACTTCATACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34948</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>121671</contig_pos>
        <strand>+</strand>
        <context>AAATGAAGTW[A/T]CTRRAACAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGCATCAATAATAAAACTGTCAGAAACAATAAAACAGATCAAATGAAGTA</left_flank>
        <right_flank>CTATAACAAAACAGATCAAATGAAGTAACTGCAAAAGTCATTTGTTTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAAGTCCTTGTATTGATAAAGTGATAGTGGTTTTCAATAATTCACACAAATTTTGATTTTGAGTTTTGTTCTCAATAGATAGTTTAGCGTTAGAATTTTCTCATGAAGCTAAGAAATTGAAAAAAAATTGTGGTTTTTTAAAACAATATTTGACTTTTAACATAATATCAGAAAAGGTTTAGATGCCGCATAAATAAGAACATTTGTCATCCATTTCTGGAAACTTCCGGGTTTTGAAAAATGTCTTCAATTTCCTCCAAAATGGACACTTTTTTGTTTTCAGAACTATTCTGTAGGTGGTCTAGAAATGGCGGGAACTCAAAAACACGTCTTCTAGACATTTCTAGATTATCAAAGTTTACTCGACAAACAGTGACAGTAGTCGACAGCAAAATGGTGTCAGCAGCGGTAGTGTGGATGAATATTGAGTAGTTTGCAAATCAGTTTGCGCATCAATAATAAAACTGTCAGAAACAATAAAACAGATCAAATGAAGTAACTATAACAAAACAGATCAAATGAAGTAACTGCAAAAGTCATTTGTTTTTGCAAAAGTCATTTGTTTTCAGAATTTTCAAAAAATTCAGGATGGCATACACTTCATACTTTGAAGCACTGGAAGAATGTCAGCTAAGTTCCTTGGAGTATCGCAGGCTCTATAATGATTTGGTCTACACGTATAAAATTATTGTTTCCAAAGAAATTATCATGGAGGTTCCAATTTTCGAAATATTTAATTATGTTGGATCATTGCGACGTCGCAAATACTATCTCAAATCACTTATCAAAAACTCAACAAAAATATCTTCTCAATTTCTCTCTAATAGAGTAATCAGATGTTGGAACTCTTTACCCGCCAATGTGTTTCCGGTGAAGCCCTCGTCAGCGGCTTTCAAAAATCGACTATTATCCTGTGATCTAAAACATTTCCTTGTCTTGAATTCAACTAATTACTAACTCGGTTTTTCCTTCATCTCCCAATTACTACAAATGTATGTC</canonical>
            <polymorphic>GGAAGTCCTTGTATTGATAAAGTGATAGTGGTTTTCAATAATTCACACAAATTTTGATTTTGAGTTTTGTTCTCAATAGATAGTTTAGCGTTAGAATTTTCTCATGAAGCTAAGAAATTGAAAAAAAATTGTGGTTTTTTAAAACAATATTTGACTTTTAACATAATATCAGAAAAGGTTTAGATGCCGCATAAATAAGAACATTTGTCATCCATTTCTGGAAACTTCCGGGTTTTGAAAAATGTCTTCAATTTCCTCCAAAATGGACACTTTTTTGTTTTCAGAACTATTCTGTAGGTGGTCTAGAAATGGCGGGAACTCAAAAACACGTCTTCTAGACATTTCTAGATTATCAAAGTTTACTCGACAAACAGTGACAGTAGTCGACAGCAAAATGGTGTCAGCAGCGGTAGTGTGGATGAATATTGAGTAGTTTGCAAATCAGTTTGCGCATCAATAATAAAACTGTCAGAAACAATAAAACAGATCAAATGAAGTAWCTATAACAAAACAGATCAAATGAAGTAACTGCAAAAGTCATTTGTTTTTGCAAAAGTCATTTGTTTTCAGAATTTTCAAAAAATTCAGGATGGCATACACTTCATACTTTGAAGCACTGGAAGAATGTCAGCTAAGTTCCTTGGAGTATCGCAGGCTCTATAATGATTTGGTCTACACGTATAAAATTATTGTTTCCAAAGAAATTATCATGGAGGTTCCAATTTTCGAAATATTTAATTATGTTGGATCATTGCGACGTCGCAAATACTATCTCAAATCACTTATCAAAAACTCAACAAAAATATCTTCTCAATTTCTCTCTAATAGAGTAATCAGATGTTGGAACTCTTTACCCGCCAATGTGTTTCCGGTGAAGCCCTCGTCAGCGGCTTTCAAAAATCGACTATTATCCTGTGATCTAAAACATTTCCTTGTCTTGAATTCAACTAATTACTAACTCGGTTTTTCCTTCATCTCCCAATTACTACAAATGTATGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>476 373 123 28</canonical_bands>
                <polymorphic_bands>476 373 151</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACTCGACAAACAGTGACAGTA</pcr_primer_p1>
		<pcr_primer_p2>AGTATGAAGTGTATGCCATCCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTACTCGACAAACAGTGACAGTAGTCGACAGCAAAATGGTGTCAGCAGCGGTAGTGTGGATGAATATTGAGTAGTTTGCAAATCAGTTTGCGCATCAATAATAAAACTGTCAGAAACAATAAAACAGATCAAATGAAGTAACTATAACAAAACAGATCAAATGAAGTAACTGCAAAAGTCATTTGTTTTTGCAAAAGTCATTTGTTTTCAGAATTTTCAAAAAATTCAGGATGGCATACACTTCATACT</canonical_amplicon>
		<polymorphic_amplicon>TTACTCGACAAACAGTGACAGTAGTCGACAGCAAAATGGTGTCAGCAGCGGTAGTGTGGATGAATATTGAGTAGTTTGCAAATCAGTTTGCGCATCAATAATAAAACTGTCAGAAACAATAAAACAGATCAAATGAAGTAWCTATAACAAAACAGATCAAATGAAGTAACTGCAAAAGTCATTTGTTTTTGCAAAAGTCATTTGTTTTCAGAATTTTCAAAAAATTCAGGATGGCATACACTTCATACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34949</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>121674</contig_pos>
        <strand></strand>
        <context>TGAAGTWWCT[A/G]RAACAAAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCAATAATAAAACTGTCAGAAACAATAAAACAGATCAAATGAAGTAACT</left_flank>
        <right_flank>TAACAAAACAGATCAAATGAAGTAACTGCAAAAGTCATTTGTTTTTGCAA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCCTTGTATTGATAAAGTGATAGTGGTTTTCAATAATTCACACAAATTTTGATTTTGAGTTTTGTTCTCAATAGATAGTTTAGCGTTAGAATTTTCTCATGAAGCTAAGAAATTGAAAAAAAATTGTGGTTTTTTAAAACAATATTTGACTTTTAACATAATATCAGAAAAGGTTTAGATGCCGCATAAATAAGAACATTTGTCATCCATTTCTGGAAACTTCCGGGTTTTGAAAAATGTCTTCAATTTCCTCCAAAATGGACACTTTTTTGTTTTCAGAACTATTCTGTAGGTGGTCTAGAAATGGCGGGAACTCAAAAACACGTCTTCTAGACATTTCTAGATTATCAAAGTTTACTCGACAAACAGTGACAGTAGTCGACAGCAAAATGGTGTCAGCAGCGGTAGTGTGGATGAATATTGAGTAGTTTGCAAATCAGTTTGCGCATCAATAATAAAACTGTCAGAAACAATAAAACAGATCAAATGAAGTAACTATAACAAAACAGATCAAATGAAGTAACTGCAAAAGTCATTTGTTTTTGCAAAAGTCATTTGTTTTCAGAATTTTCAAAAAATTCAGGATGGCATACACTTCATACTTTGAAGCACTGGAAGAATGTCAGCTAAGTTCCTTGGAGTATCGCAGGCTCTATAATGATTTGGTCTACACGTATAAAATTATTGTTTCCAAAGAAATTATCATGGAGGTTCCAATTTTCGAAATATTTAATTATGTTGGATCATTGCGACGTCGCAAATACTATCTCAAATCACTTATCAAAAACTCAACAAAAATATCTTCTCAATTTCTCTCTAATAGAGTAATCAGATGTTGGAACTCTTTACCCGCCAATGTGTTTCCGGTGAAGCCCTCGTCAGCGGCTTTCAAAAATCGACTATTATCCTGTGATCTAAAACATTTCCTTGTCTTGAATTCAACTAATTACTAACTCGGTTTTTCCTTCATCTCCCAATTACTACAAATGTATGTCCCT</canonical>
            <polymorphic>AGTCCTTGTATTGATAAAGTGATAGTGGTTTTCAATAATTCACACAAATTTTGATTTTGAGTTTTGTTCTCAATAGATAGTTTAGCGTTAGAATTTTCTCATGAAGCTAAGAAATTGAAAAAAAATTGTGGTTTTTTAAAACAATATTTGACTTTTAACATAATATCAGAAAAGGTTTAGATGCCGCATAAATAAGAACATTTGTCATCCATTTCTGGAAACTTCCGGGTTTTGAAAAATGTCTTCAATTTCCTCCAAAATGGACACTTTTTTGTTTTCAGAACTATTCTGTAGGTGGTCTAGAAATGGCGGGAACTCAAAAACACGTCTTCTAGACATTTCTAGATTATCAAAGTTTACTCGACAAACAGTGACAGTAGTCGACAGCAAAATGGTGTCAGCAGCGGTAGTGTGGATGAATATTGAGTAGTTTGCAAATCAGTTTGCGCATCAATAATAAAACTGTCAGAAACAATAAAACAGATCAAATGAAGTAACTRTAACAAAACAGATCAAATGAAGTAACTGCAAAAGTCATTTGTTTTTGCAAAAGTCATTTGTTTTCAGAATTTTCAAAAAATTCAGGATGGCATACACTTCATACTTTGAAGCACTGGAAGAATGTCAGCTAAGTTCCTTGGAGTATCGCAGGCTCTATAATGATTTGGTCTACACGTATAAAATTATTGTTTCCAAAGAAATTATCATGGAGGTTCCAATTTTCGAAATATTTAATTATGTTGGATCATTGCGACGTCGCAAATACTATCTCAAATCACTTATCAAAAACTCAACAAAAATATCTTCTCAATTTCTCTCTAATAGAGTAATCAGATGTTGGAACTCTTTACCCGCCAATGTGTTTCCGGTGAAGCCCTCGTCAGCGGCTTTCAAAAATCGACTATTATCCTGTGATCTAAAACATTTCCTTGTCTTGAATTCAACTAATTACTAACTCGGTTTTTCCTTCATCTCCCAATTACTACAAATGTATGTCCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACTCGACAAACAGTGACAGTA</pcr_primer_p1>
		<pcr_primer_p2>AGTATGAAGTGTATGCCATCCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTACTCGACAAACAGTGACAGTAGTCGACAGCAAAATGGTGTCAGCAGCGGTAGTGTGGATGAATATTGAGTAGTTTGCAAATCAGTTTGCGCATCAATAATAAAACTGTCAGAAACAATAAAACAGATCAAATGAAGTAACTATAACAAAACAGATCAAATGAAGTAACTGCAAAAGTCATTTGTTTTTGCAAAAGTCATTTGTTTTCAGAATTTTCAAAAAATTCAGGATGGCATACACTTCATACT</canonical_amplicon>
		<polymorphic_amplicon>TTACTCGACAAACAGTGACAGTAGTCGACAGCAAAATGGTGTCAGCAGCGGTAGTGTGGATGAATATTGAGTAGTTTGCAAATCAGTTTGCGCATCAATAATAAAACTGTCAGAAACAATAAAACAGATCAAATGAAGTAACTRTAACAAAACAGATCAAATGAAGTAACTGCAAAAGTCATTTGTTTTTGCAAAAGTCATTTGTTTTCAGAATTTTCAAAAAATTCAGGATGGCATACACTTCATACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34950</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>121675</contig_pos>
        <strand>+</strand>
        <context>GAAGTWWCTR[A/G]AACAAAACAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAATAATAAAACTGTCAGAAACAATAAAACAGATCAAATGAAGTAACTA</left_flank>
        <right_flank>AACAAAACAGATCAAATGAAGTAACTGCAAAAGTCATTTGTTTTTGCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCTTGTATTGATAAAGTGATAGTGGTTTTCAATAATTCACACAAATTTTGATTTTGAGTTTTGTTCTCAATAGATAGTTTAGCGTTAGAATTTTCTCATGAAGCTAAGAAATTGAAAAAAAATTGTGGTTTTTTAAAACAATATTTGACTTTTAACATAATATCAGAAAAGGTTTAGATGCCGCATAAATAAGAACATTTGTCATCCATTTCTGGAAACTTCCGGGTTTTGAAAAATGTCTTCAATTTCCTCCAAAATGGACACTTTTTTGTTTTCAGAACTATTCTGTAGGTGGTCTAGAAATGGCGGGAACTCAAAAACACGTCTTCTAGACATTTCTAGATTATCAAAGTTTACTCGACAAACAGTGACAGTAGTCGACAGCAAAATGGTGTCAGCAGCGGTAGTGTGGATGAATATTGAGTAGTTTGCAAATCAGTTTGCGCATCAATAATAAAACTGTCAGAAACAATAAAACAGATCAAATGAAGTAACTATAACAAAACAGATCAAATGAAGTAACTGCAAAAGTCATTTGTTTTTGCAAAAGTCATTTGTTTTCAGAATTTTCAAAAAATTCAGGATGGCATACACTTCATACTTTGAAGCACTGGAAGAATGTCAGCTAAGTTCCTTGGAGTATCGCAGGCTCTATAATGATTTGGTCTACACGTATAAAATTATTGTTTCCAAAGAAATTATCATGGAGGTTCCAATTTTCGAAATATTTAATTATGTTGGATCATTGCGACGTCGCAAATACTATCTCAAATCACTTATCAAAAACTCAACAAAAATATCTTCTCAATTTCTCTCTAATAGAGTAATCAGATGTTGGAACTCTTTACCCGCCAATGTGTTTCCGGTGAAGCCCTCGTCAGCGGCTTTCAAAAATCGACTATTATCCTGTGATCTAAAACATTTCCTTGTCTTGAATTCAACTAATTACTAACTCGGTTTTTCCTTCATCTCCCAATTACTACAAATGTATGTCCCTG</canonical>
            <polymorphic>GTCCTTGTATTGATAAAGTGATAGTGGTTTTCAATAATTCACACAAATTTTGATTTTGAGTTTTGTTCTCAATAGATAGTTTAGCGTTAGAATTTTCTCATGAAGCTAAGAAATTGAAAAAAAATTGTGGTTTTTTAAAACAATATTTGACTTTTAACATAATATCAGAAAAGGTTTAGATGCCGCATAAATAAGAACATTTGTCATCCATTTCTGGAAACTTCCGGGTTTTGAAAAATGTCTTCAATTTCCTCCAAAATGGACACTTTTTTGTTTTCAGAACTATTCTGTAGGTGGTCTAGAAATGGCGGGAACTCAAAAACACGTCTTCTAGACATTTCTAGATTATCAAAGTTTACTCGACAAACAGTGACAGTAGTCGACAGCAAAATGGTGTCAGCAGCGGTAGTGTGGATGAATATTGAGTAGTTTGCAAATCAGTTTGCGCATCAATAATAAAACTGTCAGAAACAATAAAACAGATCAAATGAAGTAACTARAACAAAACAGATCAAATGAAGTAACTGCAAAAGTCATTTGTTTTTGCAAAAGTCATTTGTTTTCAGAATTTTCAAAAAATTCAGGATGGCATACACTTCATACTTTGAAGCACTGGAAGAATGTCAGCTAAGTTCCTTGGAGTATCGCAGGCTCTATAATGATTTGGTCTACACGTATAAAATTATTGTTTCCAAAGAAATTATCATGGAGGTTCCAATTTTCGAAATATTTAATTATGTTGGATCATTGCGACGTCGCAAATACTATCTCAAATCACTTATCAAAAACTCAACAAAAATATCTTCTCAATTTCTCTCTAATAGAGTAATCAGATGTTGGAACTCTTTACCCGCCAATGTGTTTCCGGTGAAGCCCTCGTCAGCGGCTTTCAAAAATCGACTATTATCCTGTGATCTAAAACATTTCCTTGTCTTGAATTCAACTAATTACTAACTCGGTTTTTCCTTCATCTCCCAATTACTACAAATGTATGTCCCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACTCGACAAACAGTGACAGTA</pcr_primer_p1>
		<pcr_primer_p2>AGTATGAAGTGTATGCCATCCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTACTCGACAAACAGTGACAGTAGTCGACAGCAAAATGGTGTCAGCAGCGGTAGTGTGGATGAATATTGAGTAGTTTGCAAATCAGTTTGCGCATCAATAATAAAACTGTCAGAAACAATAAAACAGATCAAATGAAGTAACTATAACAAAACAGATCAAATGAAGTAACTGCAAAAGTCATTTGTTTTTGCAAAAGTCATTTGTTTTCAGAATTTTCAAAAAATTCAGGATGGCATACACTTCATACT</canonical_amplicon>
		<polymorphic_amplicon>TTACTCGACAAACAGTGACAGTAGTCGACAGCAAAATGGTGTCAGCAGCGGTAGTGTGGATGAATATTGAGTAGTTTGCAAATCAGTTTGCGCATCAATAATAAAACTGTCAGAAACAATAAAACAGATCAAATGAAGTAACTARAACAAAACAGATCAAATGAAGTAACTGCAAAAGTCATTTGTTTTTGCAAAAGTCATTTGTTTTCAGAATTTTCAAAAAATTCAGGATGGCATACACTTCATACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34951</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>122919</contig_pos>
        <strand></strand>
        <context>CGAATAAAAC[T/A]RATCATATAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAAC</left_flank>
        <right_flank>AATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTCGATTTTTTGAACTAATTTCCTAAAATTTTTCGTAAGTTATAAATGACTCAAAAACCAAACTAATATGCATTTTCTGTAAAACATACAAATAACTGAATAGAAAATGATATCTCCTAAAAAATTTTATGACAGACATGTATTTGTTTGATCACTATTTTTTGTAGTGTTACAGATTTGGAATCCAGTGCAATGTCTGAAAAATTATGAACATCCCTTGTCGCATTTTTGATGTAGACAGACGCATTGTAGAATTGGTAAATGCCACAGAGACGTATTGATTGAAAAAAATTTAGTGTTTCAAATCTTCATTTTGAAACTGGCTTCTTCTCAAAAACTTTAATGATACTATGTAACCCATGGCTTTATTGAAACAGAAATACAGGTTATTTGTTCTGAAAACATTTCAGTTTGATAAATTTCATTAACTTAAAAAATTAATATAATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACTAATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACATTCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGTGGGCTTGAAACAGAAAAGAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGAGAATTCATTGCATTTTTGGGCGTCGCCGGTCACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCCGGCAAAGGCATTCGGAAGCCGACCAAGCCT</canonical>
            <polymorphic>ATTTTTCGATTTTTTGAACTAATTTCCTAAAATTTTTCGTAAGTTATAAATGACTCAAAAACCAAACTAATATGCATTTTCTGTAAAACATACAAATAACTGAATAGAAAATGATATCTCCTAAAAAATTTTATGACAGACATGTATTTGTTTGATCACTATTTTTTGTAGTGTTACAGATTTGGAATCCAGTGCAATGTCTGAAAAATTATGAACATCCCTTGTCGCATTTTTGATGTAGACAGACGCATTGTAGAATTGGTAAATGCCACAGAGACGTATTGATTGAAAAAAATTTAGTGTTTCAAATCTTCATTTTGAAACTGGCTTCTTCTCAAAAACTTTAATGATACTATGTAACCCATGGCTTTATTGAAACAGAAATACAGGTTATTTGTTCTGAAAACATTTCAGTTTGATAAATTTCATTAACTTAAAAAATTAATATAATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACWAATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACATTCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGTGGGCTTGAAACAGAAAAGAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGAGAATTCATTGCATTTTTGGGCGTCGCCGGTCACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCCGGCAAAGGCATTCGGAAGCCGACCAAGCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGCTTTATTGAAACAGAAATAC</pcr_primer_p1>
		<pcr_primer_p2>ACTGACTCTCAAATTCCTTGATT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TGGCTTTATTGAAACAGAAATACAGGTTATTTGTTCTGAAAACATTTCAGTTTGATAAATTTCATTAACTTAAAAAATTAATATAATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACTAATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACATTCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGT</canonical_amplicon>
		<polymorphic_amplicon>TGGCTTTATTGAAACAGAAATACAGGTTATTTGTTCTGAAAACATTTCAGTTTGATAAATTTCATTAACTTAAAAAATTAATATAATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACWAATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACATTCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34952</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>122920</contig_pos>
        <strand></strand>
        <context>GAATAAAACW[A/G]ATCATATAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACT</left_flank>
        <right_flank>ATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAAT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCGATTTTTTGAACTAATTTCCTAAAATTTTTCGTAAGTTATAAATGACTCAAAAACCAAACTAATATGCATTTTCTGTAAAACATACAAATAACTGAATAGAAAATGATATCTCCTAAAAAATTTTATGACAGACATGTATTTGTTTGATCACTATTTTTTGTAGTGTTACAGATTTGGAATCCAGTGCAATGTCTGAAAAATTATGAACATCCCTTGTCGCATTTTTGATGTAGACAGACGCATTGTAGAATTGGTAAATGCCACAGAGACGTATTGATTGAAAAAAATTTAGTGTTTCAAATCTTCATTTTGAAACTGGCTTCTTCTCAAAAACTTTAATGATACTATGTAACCCATGGCTTTATTGAAACAGAAATACAGGTTATTTGTTCTGAAAACATTTCAGTTTGATAAATTTCATTAACTTAAAAAATTAATATAATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACTAATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACATTCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGTGGGCTTGAAACAGAAAAGAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGAGAATTCATTGCATTTTTGGGCGTCGCCGGTCACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCCGGCAAAGGCATTCGGAAGCCGACCAAGCCTC</canonical>
            <polymorphic>TTTTTCGATTTTTTGAACTAATTTCCTAAAATTTTTCGTAAGTTATAAATGACTCAAAAACCAAACTAATATGCATTTTCTGTAAAACATACAAATAACTGAATAGAAAATGATATCTCCTAAAAAATTTTATGACAGACATGTATTTGTTTGATCACTATTTTTTGTAGTGTTACAGATTTGGAATCCAGTGCAATGTCTGAAAAATTATGAACATCCCTTGTCGCATTTTTGATGTAGACAGACGCATTGTAGAATTGGTAAATGCCACAGAGACGTATTGATTGAAAAAAATTTAGTGTTTCAAATCTTCATTTTGAAACTGGCTTCTTCTCAAAAACTTTAATGATACTATGTAACCCATGGCTTTATTGAAACAGAAATACAGGTTATTTGTTCTGAAAACATTTCAGTTTGATAAATTTCATTAACTTAAAAAATTAATATAATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACTRATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACATTCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGTGGGCTTGAAACAGAAAAGAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGAGAATTCATTGCATTTTTGGGCGTCGCCGGTCACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCCGGCAAAGGCATTCGGAAGCCGACCAAGCCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGCTTTATTGAAACAGAAATAC</pcr_primer_p1>
		<pcr_primer_p2>ACTGACTCTCAAATTCCTTGATT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TGGCTTTATTGAAACAGAAATACAGGTTATTTGTTCTGAAAACATTTCAGTTTGATAAATTTCATTAACTTAAAAAATTAATATAATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACTAATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACATTCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGT</canonical_amplicon>
		<polymorphic_amplicon>TGGCTTTATTGAAACAGAAATACAGGTTATTTGTTCTGAAAACATTTCAGTTTGATAAATTTCATTAACTTAAAAAATTAATATAATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACTRATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACATTCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34953</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>122988</contig_pos>
        <strand></strand>
        <context>AAAACTACAT[T/C]CTTTAAGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACAT</left_flank>
        <right_flank>CTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGTGGGCTTGAAACAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATGCATTTTCTGTAAAACATACAAATAACTGAATAGAAAATGATATCTCCTAAAAAATTTTATGACAGACATGTATTTGTTTGATCACTATTTTTTGTAGTGTTACAGATTTGGAATCCAGTGCAATGTCTGAAAAATTATGAACATCCCTTGTCGCATTTTTGATGTAGACAGACGCATTGTAGAATTGGTAAATGCCACAGAGACGTATTGATTGAAAAAAATTTAGTGTTTCAAATCTTCATTTTGAAACTGGCTTCTTCTCAAAAACTTTAATGATACTATGTAACCCATGGCTTTATTGAAACAGAAATACAGGTTATTTGTTCTGAAAACATTTCAGTTTGATAAATTTCATTAACTTAAAAAATTAATATAATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACTAATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACATTCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGTGGGCTTGAAACAGAAAAGAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGAGAATTCATTGCATTTTTGGGCGTCGCCGGTCACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCCGGCAAAGGCATTCGGAAGCCGACCAAGCCTCGATCGGAAGCCGACCAAGCCTCGACAAACTTCCGGCCAACTTCGGACCTCATAACAGCAGGGGCCGGT</canonical>
            <polymorphic>ATATGCATTTTCTGTAAAACATACAAATAACTGAATAGAAAATGATATCTCCTAAAAAATTTTATGACAGACATGTATTTGTTTGATCACTATTTTTTGTAGTGTTACAGATTTGGAATCCAGTGCAATGTCTGAAAAATTATGAACATCCCTTGTCGCATTTTTGATGTAGACAGACGCATTGTAGAATTGGTAAATGCCACAGAGACGTATTGATTGAAAAAAATTTAGTGTTTCAAATCTTCATTTTGAAACTGGCTTCTTCTCAAAAACTTTAATGATACTATGTAACCCATGGCTTTATTGAAACAGAAATACAGGTTATTTGTTCTGAAAACATTTCAGTTTGATAAATTTCATTAACTTAAAAAATTAATATAATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACTAATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACATYCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGTGGGCTTGAAACAGAAAAGAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGAGAATTCATTGCATTTTTGGGCGTCGCCGGTCACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCCGGCAAAGGCATTCGGAAGCCGACCAAGCCTCGATCGGAAGCCGACCAAGCCTCGACAAACTTCCGGCCAACTTCGGACCTCATAACAGCAGGGGCCGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATACAGGTTATTTGTTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAATACGACAATTCATTTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>266</pcr_amplicon_size>
		<canonical_amplicon>GAAATACAGGTTATTTGTTCTGAAAACATTTCAGTTTGATAAATTTCATTAACTTAAAAAATTAATATAATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACTAATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACATTCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGTGGGCTTGAAACAGAAAAGAAGAAATGAATTGTCGTATTTC</canonical_amplicon>
		<polymorphic_amplicon>GAAATACAGGTTATTTGTTCTGAAAACATTTCAGTTTGATAAATTTCATTAACTTAAAAAATTAATATAATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACTAATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACATYCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGTGGGCTTGAAACAGAAAAGAAGAAATGAATTGTCGTATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34954</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>123042</contig_pos>
        <strand></strand>
        <context>GAAACAGAAA[A/G]GAAGAAATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGTGGGCTTGAAACAGAAA</left_flank>
        <right_flank>GAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATTTTATGACAGACATGTATTTGTTTGATCACTATTTTTTGTAGTGTTACAGATTTGGAATCCAGTGCAATGTCTGAAAAATTATGAACATCCCTTGTCGCATTTTTGATGTAGACAGACGCATTGTAGAATTGGTAAATGCCACAGAGACGTATTGATTGAAAAAAATTTAGTGTTTCAAATCTTCATTTTGAAACTGGCTTCTTCTCAAAAACTTTAATGATACTATGTAACCCATGGCTTTATTGAAACAGAAATACAGGTTATTTGTTCTGAAAACATTTCAGTTTGATAAATTTCATTAACTTAAAAAATTAATATAATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACTAATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACATTCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGTGGGCTTGAAACAGAAAAGAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGAGAATTCATTGCATTTTTGGGCGTCGCCGGTCACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCCGGCAAAGGCATTCGGAAGCCGACCAAGCCTCGATCGGAAGCCGACCAAGCCTCGACAAACTTCCGGCCAACTTCGGACCTCATAACAGCAGGGGCCGGTTTTCTTCGCGCTTTTTCTCATGTTTTATAGTAAAACAGTACATCGTATTGTATT</canonical>
            <polymorphic>AAAAATTTTATGACAGACATGTATTTGTTTGATCACTATTTTTTGTAGTGTTACAGATTTGGAATCCAGTGCAATGTCTGAAAAATTATGAACATCCCTTGTCGCATTTTTGATGTAGACAGACGCATTGTAGAATTGGTAAATGCCACAGAGACGTATTGATTGAAAAAAATTTAGTGTTTCAAATCTTCATTTTGAAACTGGCTTCTTCTCAAAAACTTTAATGATACTATGTAACCCATGGCTTTATTGAAACAGAAATACAGGTTATTTGTTCTGAAAACATTTCAGTTTGATAAATTTCATTAACTTAAAAAATTAATATAATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACTAATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACATTCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGTGGGCTTGAAACAGAAARGAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGAGAATTCATTGCATTTTTGGGCGTCGCCGGTCACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCCGGCAAAGGCATTCGGAAGCCGACCAAGCCTCGATCGGAAGCCGACCAAGCCTCGACAAACTTCCGGCCAACTTCGGACCTCATAACAGCAGGGGCCGGTTTTCTTCGCGCTTTTTCTCATGTTTTATAGTAAAACAGTACATCGTATTGTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTGATTTATAGAAAATGAGACAAA</pcr_primer_p1>
		<pcr_primer_p2>CATTTTAATTTCAGACAACACACT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GAGTGATTTATAGAAAATGAGACAAAAAACTACATTCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGTGGGCTTGAAACAGAAAAGAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATG</canonical_amplicon>
		<polymorphic_amplicon>GAGTGATTTATAGAAAATGAGACAAAAAACTACATTCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGTGGGCTTGAAACAGAAARGAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34955</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>123117</contig_pos>
        <strand></strand>
        <context>CAAGGCCCTT[A/C]TAGTAGAAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTT</left_flank>
        <right_flank>TAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTGAAAAATTATGAACATCCCTTGTCGCATTTTTGATGTAGACAGACGCATTGTAGAATTGGTAAATGCCACAGAGACGTATTGATTGAAAAAAATTTAGTGTTTCAAATCTTCATTTTGAAACTGGCTTCTTCTCAAAAACTTTAATGATACTATGTAACCCATGGCTTTATTGAAACAGAAATACAGGTTATTTGTTCTGAAAACATTTCAGTTTGATAAATTTCATTAACTTAAAAAATTAATATAATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACTAATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACATTCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGTGGGCTTGAAACAGAAAAGAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGAGAATTCATTGCATTTTTGGGCGTCGCCGGTCACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCCGGCAAAGGCATTCGGAAGCCGACCAAGCCTCGATCGGAAGCCGACCAAGCCTCGACAAACTTCCGGCCAACTTCGGACCTCATAACAGCAGGGGCCGGTTTTCTTCGCGCTTTTTCTCATGTTTTATAGTAAAACAGTACATCGTATTGTATTTTATTTATTACAAAAAATAATACATATAAGGGGGATTTAGAAAAAAATTACGAAAGTCGGAACATCATCACACAA</canonical>
            <polymorphic>GTCTGAAAAATTATGAACATCCCTTGTCGCATTTTTGATGTAGACAGACGCATTGTAGAATTGGTAAATGCCACAGAGACGTATTGATTGAAAAAAATTTAGTGTTTCAAATCTTCATTTTGAAACTGGCTTCTTCTCAAAAACTTTAATGATACTATGTAACCCATGGCTTTATTGAAACAGAAATACAGGTTATTTGTTCTGAAAACATTTCAGTTTGATAAATTTCATTAACTTAAAAAATTAATATAATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACTAATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACATTCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGTGGGCTTGAAACAGAAAAGAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTMTAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGAGAATTCATTGCATTTTTGGGCGTCGCCGGTCACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCCGGCAAAGGCATTCGGAAGCCGACCAAGCCTCGATCGGAAGCCGACCAAGCCTCGACAAACTTCCGGCCAACTTCGGACCTCATAACAGCAGGGGCCGGTTTTCTTCGCGCTTTTTCTCATGTTTTATAGTAAAACAGTACATCGTATTGTATTTTATTTATTACAAAAAATAATACATATAAGGGGGATTTAGAAAAAAATTACGAAAGTCGGAACATCATCACACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGAAATGAATTGTCGTATTTC</pcr_primer_p1>
		<pcr_primer_p2>AATCTATCAACTTCACAACATTGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATT</canonical_amplicon>
		<polymorphic_amplicon>GAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTMTAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34956</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>123145</contig_pos>
        <strand></strand>
        <context>CATTAGAGGA[G/A]CCCTGTGATR</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGA</left_flank>
        <right_flank>CCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCATTTTTGATGTAGACAGACGCATTGTAGAATTGGTAAATGCCACAGAGACGTATTGATTGAAAAAAATTTAGTGTTTCAAATCTTCATTTTGAAACTGGCTTCTTCTCAAAAACTTTAATGATACTATGTAACCCATGGCTTTATTGAAACAGAAATACAGGTTATTTGTTCTGAAAACATTTCAGTTTGATAAATTTCATTAACTTAAAAAATTAATATAATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACTAATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACATTCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGTGGGCTTGAAACAGAAAAGAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGAGAATTCATTGCATTTTTGGGCGTCGCCGGTCACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCCGGCAAAGGCATTCGGAAGCCGACCAAGCCTCGATCGGAAGCCGACCAAGCCTCGACAAACTTCCGGCCAACTTCGGACCTCATAACAGCAGGGGCCGGTTTTCTTCGCGCTTTTTCTCATGTTTTATAGTAAAACAGTACATCGTATTGTATTTTATTTATTACAAAAAATAATACATATAAGGGGGATTTAGAAAAAAATTACGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCCCGGAA</canonical>
            <polymorphic>GCATTTTTGATGTAGACAGACGCATTGTAGAATTGGTAAATGCCACAGAGACGTATTGATTGAAAAAAATTTAGTGTTTCAAATCTTCATTTTGAAACTGGCTTCTTCTCAAAAACTTTAATGATACTATGTAACCCATGGCTTTATTGAAACAGAAATACAGGTTATTTGTTCTGAAAACATTTCAGTTTGATAAATTTCATTAACTTAAAAAATTAATATAATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACTAATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACATTCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGTGGGCTTGAAACAGAAAAGAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGARCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGAGAATTCATTGCATTTTTGGGCGTCGCCGGTCACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCCGGCAAAGGCATTCGGAAGCCGACCAAGCCTCGATCGGAAGCCGACCAAGCCTCGACAAACTTCCGGCCAACTTCGGACCTCATAACAGCAGGGGCCGGTTTTCTTCGCGCTTTTTCTCATGTTTTATAGTAAAACAGTACATCGTATTGTATTTTATTTATTACAAAAAATAATACATATAAGGGGGATTTAGAAAAAAATTACGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCCCGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>485 481 17 17</canonical_bands>
                <polymorphic_bands>485 481 34</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>485 481 17 17</canonical_bands>
                <polymorphic_bands>485 481 34</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>242 185 155 101 66 45 40 28 17 17 17 17 17 15 13 9 9 7</canonical_bands>
                <polymorphic_bands>242 185 155 101 66 45 40 34 28 17 17 17 15 13 9 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGAAATGAATTGTCGTATTTC</pcr_primer_p1>
		<pcr_primer_p2>AATCTATCAACTTCACAACATTGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATT</canonical_amplicon>
		<polymorphic_amplicon>GAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGARCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34957</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>123155</contig_pos>
        <strand></strand>
        <context>RCCCTGTGAT[G/A]AAAGGASCCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGAT</left_flank>
        <right_flank>AAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTAGACAGACGCATTGTAGAATTGGTAAATGCCACAGAGACGTATTGATTGAAAAAAATTTAGTGTTTCAAATCTTCATTTTGAAACTGGCTTCTTCTCAAAAACTTTAATGATACTATGTAACCCATGGCTTTATTGAAACAGAAATACAGGTTATTTGTTCTGAAAACATTTCAGTTTGATAAATTTCATTAACTTAAAAAATTAATATAATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACTAATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACATTCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGTGGGCTTGAAACAGAAAAGAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGAGAATTCATTGCATTTTTGGGCGTCGCCGGTCACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCCGGCAAAGGCATTCGGAAGCCGACCAAGCCTCGATCGGAAGCCGACCAAGCCTCGACAAACTTCCGGCCAACTTCGGACCTCATAACAGCAGGGGCCGGTTTTCTTCGCGCTTTTTCTCATGTTTTATAGTAAAACAGTACATCGTATTGTATTTTATTTATTACAAAAAATAATACATATAAGGGGGATTTAGAAAAAAATTACGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCCCGGAAAACTAACTTC</canonical>
            <polymorphic>TGTAGACAGACGCATTGTAGAATTGGTAAATGCCACAGAGACGTATTGATTGAAAAAAATTTAGTGTTTCAAATCTTCATTTTGAAACTGGCTTCTTCTCAAAAACTTTAATGATACTATGTAACCCATGGCTTTATTGAAACAGAAATACAGGTTATTTGTTCTGAAAACATTTCAGTTTGATAAATTTCATTAACTTAAAAAATTAATATAATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACTAATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACATTCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGTGGGCTTGAAACAGAAAAGAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATRAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGAGAATTCATTGCATTTTTGGGCGTCGCCGGTCACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCCGGCAAAGGCATTCGGAAGCCGACCAAGCCTCGATCGGAAGCCGACCAAGCCTCGACAAACTTCCGGCCAACTTCGGACCTCATAACAGCAGGGGCCGGTTTTCTTCGCGCTTTTTCTCATGTTTTATAGTAAAACAGTACATCGTATTGTATTTTATTTATTACAAAAAATAATACATATAAGGGGGATTTAGAAAAAAATTACGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCCCGGAAAACTAACTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGAAATGAATTGTCGTATTTC</pcr_primer_p1>
		<pcr_primer_p2>AATCTATCAACTTCACAACATTGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATT</canonical_amplicon>
		<polymorphic_amplicon>GAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATRAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34958</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>123162</contig_pos>
        <strand></strand>
        <context>GATRAAAGGA[G/C]CCCCTTCAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGA</left_flank>
        <right_flank>CCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGACGCATTGTAGAATTGGTAAATGCCACAGAGACGTATTGATTGAAAAAAATTTAGTGTTTCAAATCTTCATTTTGAAACTGGCTTCTTCTCAAAAACTTTAATGATACTATGTAACCCATGGCTTTATTGAAACAGAAATACAGGTTATTTGTTCTGAAAACATTTCAGTTTGATAAATTTCATTAACTTAAAAAATTAATATAATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACTAATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACATTCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGTGGGCTTGAAACAGAAAAGAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGAGAATTCATTGCATTTTTGGGCGTCGCCGGTCACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCCGGCAAAGGCATTCGGAAGCCGACCAAGCCTCGATCGGAAGCCGACCAAGCCTCGACAAACTTCCGGCCAACTTCGGACCTCATAACAGCAGGGGCCGGTTTTCTTCGCGCTTTTTCTCATGTTTTATAGTAAAACAGTACATCGTATTGTATTTTATTTATTACAAAAAATAATACATATAAGGGGGATTTAGAAAAAAATTACGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCCCGGAAAACTAACTTCATGTTCT</canonical>
            <polymorphic>AGACGCATTGTAGAATTGGTAAATGCCACAGAGACGTATTGATTGAAAAAAATTTAGTGTTTCAAATCTTCATTTTGAAACTGGCTTCTTCTCAAAAACTTTAATGATACTATGTAACCCATGGCTTTATTGAAACAGAAATACAGGTTATTTGTTCTGAAAACATTTCAGTTTGATAAATTTCATTAACTTAAAAAATTAATATAATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACTAATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACATTCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGTGGGCTTGAAACAGAAAAGAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGASCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGAGAATTCATTGCATTTTTGGGCGTCGCCGGTCACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCCGGCAAAGGCATTCGGAAGCCGACCAAGCCTCGATCGGAAGCCGACCAAGCCTCGACAAACTTCCGGCCAACTTCGGACCTCATAACAGCAGGGGCCGGTTTTCTTCGCGCTTTTTCTCATGTTTTATAGTAAAACAGTACATCGTATTGTATTTTATTTATTACAAAAAATAATACATATAAGGGGGATTTAGAAAAAAATTACGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCCCGGAAAACTAACTTCATGTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>498 468 17 17</canonical_bands>
                <polymorphic_bands>515 468 17</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>498 468 17 17</canonical_bands>
                <polymorphic_bands>515 468 17</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>242 185 155 84 66 45 40 28 24 17 17 17 17 17 15 13 9 9</canonical_bands>
                <polymorphic_bands>242 202 155 84 66 45 40 28 24 17 17 17 17 15 13 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGAAATGAATTGTCGTATTTC</pcr_primer_p1>
		<pcr_primer_p2>AATCTATCAACTTCACAACATTGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATT</canonical_amplicon>
		<polymorphic_amplicon>GAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGASCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34959</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>123196</contig_pos>
        <strand></strand>
        <context>AATTAAAATG[T/C]TCCWTACGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATG</left_flank>
        <right_flank>TCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTATTGATTGAAAAAAATTTAGTGTTTCAAATCTTCATTTTGAAACTGGCTTCTTCTCAAAAACTTTAATGATACTATGTAACCCATGGCTTTATTGAAACAGAAATACAGGTTATTTGTTCTGAAAACATTTCAGTTTGATAAATTTCATTAACTTAAAAAATTAATATAATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACTAATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACATTCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGTGGGCTTGAAACAGAAAAGAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGAGAATTCATTGCATTTTTGGGCGTCGCCGGTCACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCCGGCAAAGGCATTCGGAAGCCGACCAAGCCTCGATCGGAAGCCGACCAAGCCTCGACAAACTTCCGGCCAACTTCGGACCTCATAACAGCAGGGGCCGGTTTTCTTCGCGCTTTTTCTCATGTTTTATAGTAAAACAGTACATCGTATTGTATTTTATTTATTACAAAAAATAATACATATAAGGGGGATTTAGAAAAAAATTACGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCCCGGAAAACTAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTACTTTTC</canonical>
            <polymorphic>CGTATTGATTGAAAAAAATTTAGTGTTTCAAATCTTCATTTTGAAACTGGCTTCTTCTCAAAAACTTTAATGATACTATGTAACCCATGGCTTTATTGAAACAGAAATACAGGTTATTTGTTCTGAAAACATTTCAGTTTGATAAATTTCATTAACTTAAAAAATTAATATAATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACTAATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACATTCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGTGGGCTTGAAACAGAAAAGAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGYTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGAGAATTCATTGCATTTTTGGGCGTCGCCGGTCACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCCGGCAAAGGCATTCGGAAGCCGACCAAGCCTCGATCGGAAGCCGACCAAGCCTCGACAAACTTCCGGCCAACTTCGGACCTCATAACAGCAGGGGCCGGTTTTCTTCGCGCTTTTTCTCATGTTTTATAGTAAAACAGTACATCGTATTGTATTTTATTTATTACAAAAAATAATACATATAAGGGGGATTTAGAAAAAAATTACGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCCCGGAAAACTAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTACTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGAAATGAATTGTCGTATTTC</pcr_primer_p1>
		<pcr_primer_p2>AATCTATCAACTTCACAACATTGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATT</canonical_amplicon>
		<polymorphic_amplicon>GAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGYTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34960</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>123200</contig_pos>
        <strand></strand>
        <context>AAAATGYTCC[T/A]TACGTTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCC</left_flank>
        <right_flank>TACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGATTGAAAAAAATTTAGTGTTTCAAATCTTCATTTTGAAACTGGCTTCTTCTCAAAAACTTTAATGATACTATGTAACCCATGGCTTTATTGAAACAGAAATACAGGTTATTTGTTCTGAAAACATTTCAGTTTGATAAATTTCATTAACTTAAAAAATTAATATAATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACTAATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACATTCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGTGGGCTTGAAACAGAAAAGAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGAGAATTCATTGCATTTTTGGGCGTCGCCGGTCACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCCGGCAAAGGCATTCGGAAGCCGACCAAGCCTCGATCGGAAGCCGACCAAGCCTCGACAAACTTCCGGCCAACTTCGGACCTCATAACAGCAGGGGCCGGTTTTCTTCGCGCTTTTTCTCATGTTTTATAGTAAAACAGTACATCGTATTGTATTTTATTTATTACAAAAAATAATACATATAAGGGGGATTTAGAAAAAAATTACGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCCCGGAAAACTAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTACTTTTCAAAC</canonical>
            <polymorphic>TTGATTGAAAAAAATTTAGTGTTTCAAATCTTCATTTTGAAACTGGCTTCTTCTCAAAAACTTTAATGATACTATGTAACCCATGGCTTTATTGAAACAGAAATACAGGTTATTTGTTCTGAAAACATTTCAGTTTGATAAATTTCATTAACTTAAAAAATTAATATAATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACTAATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACATTCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGTGGGCTTGAAACAGAAAAGAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCWTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGAGAATTCATTGCATTTTTGGGCGTCGCCGGTCACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCCGGCAAAGGCATTCGGAAGCCGACCAAGCCTCGATCGGAAGCCGACCAAGCCTCGACAAACTTCCGGCCAACTTCGGACCTCATAACAGCAGGGGCCGGTTTTCTTCGCGCTTTTTCTCATGTTTTATAGTAAAACAGTACATCGTATTGTATTTTATTTATTACAAAAAATAATACATATAAGGGGGATTTAGAAAAAAATTACGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCCCGGAAAACTAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTACTTTTCAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGAAATGAATTGTCGTATTTC</pcr_primer_p1>
		<pcr_primer_p2>AATCTATCAACTTCACAACATTGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATT</canonical_amplicon>
		<polymorphic_amplicon>GAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCWTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34961</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>123308</contig_pos>
        <strand></strand>
        <context>ATGTTTTAGG[A/G]GAATTCATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGG</left_flank>
        <right_flank>GAATTCATTGCATTTTTGGGCGTCGCCGGTCACTTCTGGCCGGCGTTTGG</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTATTTGTTCTGAAAACATTTCAGTTTGATAAATTTCATTAACTTAAAAAATTAATATAATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACTAATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACATTCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGTGGGCTTGAAACAGAAAAGAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGAGAATTCATTGCATTTTTGGGCGTCGCCGGTCACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCCGGCAAAGGCATTCGGAAGCCGACCAAGCCTCGATCGGAAGCCGACCAAGCCTCGACAAACTTCCGGCCAACTTCGGACCTCATAACAGCAGGGGCCGGTTTTCTTCGCGCTTTTTCTCATGTTTTATAGTAAAACAGTACATCGTATTGTATTTTATTTATTACAAAAAATAATACATATAAGGGGGATTTAGAAAAAAATTACGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCCCGGAAAACTAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTACTTTTCAAACACCGCCGATCCCTCAGATGGCATGTACAAAAGCTCATGATAGATGGAACTGGTGAGTCGACGAACTATTATAGAACGATCGGGTTCATGTGGGCTATGTACTTGCCGT</canonical>
            <polymorphic>GTTATTTGTTCTGAAAACATTTCAGTTTGATAAATTTCATTAACTTAAAAAATTAATATAATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACTAATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACATTCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGTGGGCTTGAAACAGAAAAGAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGRGAATTCATTGCATTTTTGGGCGTCGCCGGTCACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCCGGCAAAGGCATTCGGAAGCCGACCAAGCCTCGATCGGAAGCCGACCAAGCCTCGACAAACTTCCGGCCAACTTCGGACCTCATAACAGCAGGGGCCGGTTTTCTTCGCGCTTTTTCTCATGTTTTATAGTAAAACAGTACATCGTATTGTATTTTATTTATTACAAAAAATAATACATATAAGGGGGATTTAGAAAAAAATTACGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCCCGGAAAACTAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTACTTTTCAAACACCGCCGATCCCTCAGATGGCATGTACAAAAGCTCATGATAGATGGAACTGGTGAGTCGACGAACTATTATAGAACGATCGGGTTCATGTGGGCTATGTACTTGCCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGTGTTGTCTGAAATTAAAATG</pcr_primer_p1>
		<pcr_primer_p2>TGTTATGAGGTCCGAAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>305</pcr_amplicon_size>
		<canonical_amplicon>AGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGAGAATTCATTGCATTTTTGGGCGTCGCCGGTCACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCCGGCAAAGGCATTCGGAAGCCGACCAAGCCTCGATCGGAAGCCGACCAAGCCTCGACAAACTTCCGGCCAACTTCGGACCTCATAACA</canonical_amplicon>
		<polymorphic_amplicon>AGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGRGAATTCATTGCATTTTTGGGCGTCGCCGGTCACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCCGGCAAAGGCATTCGGAAGCCGACCAAGCCTCGATCGGAAGCCGACCAAGCCTCGACAAACTTCCGGCCAACTTCGGACCTCATAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34962</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>123323</contig_pos>
        <strand></strand>
        <context>TCATTGCATT[T/C]TTGGGCGTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGAGAATTCATTGCATT</left_flank>
        <right_flank>TTGGGCGTCGCCGGTCACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACATTTCAGTTTGATAAATTTCATTAACTTAAAAAATTAATATAATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACTAATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACATTCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGTGGGCTTGAAACAGAAAAGAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGAGAATTCATTGCATTTTTGGGCGTCGCCGGTCACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCCGGCAAAGGCATTCGGAAGCCGACCAAGCCTCGATCGGAAGCCGACCAAGCCTCGACAAACTTCCGGCCAACTTCGGACCTCATAACAGCAGGGGCCGGTTTTCTTCGCGCTTTTTCTCATGTTTTATAGTAAAACAGTACATCGTATTGTATTTTATTTATTACAAAAAATAATACATATAAGGGGGATTTAGAAAAAAATTACGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCCCGGAAAACTAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTACTTTTCAAACACCGCCGATCCCTCAGATGGCATGTACAAAAGCTCATGATAGATGGAACTGGTGAGTCGACGAACTATTATAGAACGATCGGGTTCATGTGGGCTATGTACTTGCCGTCGGCGCCGTTTAGGC</canonical>
            <polymorphic>AACATTTCAGTTTGATAAATTTCATTAACTTAAAAAATTAATATAATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACTAATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACATTCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGTGGGCTTGAAACAGAAAAGAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGAGAATTCATTGCATTYTTGGGCGTCGCCGGTCACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCCGGCAAAGGCATTCGGAAGCCGACCAAGCCTCGATCGGAAGCCGACCAAGCCTCGACAAACTTCCGGCCAACTTCGGACCTCATAACAGCAGGGGCCGGTTTTCTTCGCGCTTTTTCTCATGTTTTATAGTAAAACAGTACATCGTATTGTATTTTATTTATTACAAAAAATAATACATATAAGGGGGATTTAGAAAAAAATTACGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCCCGGAAAACTAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTACTTTTCAAACACCGCCGATCCCTCAGATGGCATGTACAAAAGCTCATGATAGATGGAACTGGTGAGTCGACGAACTATTATAGAACGATCGGGTTCATGTGGGCTATGTACTTGCCGTCGGCGCCGTTTAGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTACTCAATGTTGTGAAGTTGA</pcr_primer_p1>
		<pcr_primer_p2>TGTTATGAGGTCCGAAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>216</pcr_amplicon_size>
		<canonical_amplicon>AATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGAGAATTCATTGCATTTTTGGGCGTCGCCGGTCACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCCGGCAAAGGCATTCGGAAGCCGACCAAGCCTCGATCGGAAGCCGACCAAGCCTCGACAAACTTCCGGCCAACTTCGGACCTCATAACA</canonical_amplicon>
		<polymorphic_amplicon>AATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGAGAATTCATTGCATTYTTGGGCGTCGCCGGTCACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCCGGCAAAGGCATTCGGAAGCCGACCAAGCCTCGATCGGAAGCCGACCAAGCCTCGACAAACTTCCGGCCAACTTCGGACCTCATAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34963</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>123339</contig_pos>
        <strand></strand>
        <context>CGTCGCCGGT[C/A]ACTTCTGGCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTTCATTAATGTTTTAGGAGAATTCATTGCATTTTTGGGCGTCGCCGGT</left_flank>
        <right_flank>ACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTCATTAACTTAAAAAATTAATATAATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACTAATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACATTCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGTGGGCTTGAAACAGAAAAGAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGAGAATTCATTGCATTTTTGGGCGTCGCCGGTCACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCCGGCAAAGGCATTCGGAAGCCGACCAAGCCTCGATCGGAAGCCGACCAAGCCTCGACAAACTTCCGGCCAACTTCGGACCTCATAACAGCAGGGGCCGGTTTTCTTCGCGCTTTTTCTCATGTTTTATAGTAAAACAGTACATCGTATTGTATTTTATTTATTACAAAAAATAATACATATAAGGGGGATTTAGAAAAAAATTACGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCCCGGAAAACTAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTACTTTTCAAACACCGCCGATCCCTCAGATGGCATGTACAAAAGCTCATGATAGATGGAACTGGTGAGTCGACGAACTATTATAGAACGATCGGGTTCATGTGGGCTATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGAC</canonical>
            <polymorphic>AAATTTCATTAACTTAAAAAATTAATATAATTAATGTAGTATACAAGCACACATCCGAACGATCGCACACGAATAAAACTAATCATATAAGGTTTCTATAGCAGTAAAATTTAGAGTGATTTATAGAAAATGAGACAAAAAACTACATTCTTTAAGTTTGAGAAATCAAGGAATTTGAGAGTCAGTGGGCTTGAAACAGAAAAGAAGAAATGAATTGTCGTATTTCCAAGTACAGTAAAACATGTATCAGAAGGGCCTCTTTAATAACAAGGCCCTTATAGTAGAAGGGCCCCTGCATTAGAGGAGCCCTGTGATGAAAGGAGCCCCTTCAAAGTGTGTTGTCTGAAATTAAAATGTTCCTTACGTTTTCAGTAAAAACATATTCCGGAAGTCCCAAAAAAATTGGAAAGTACTTCGAAAAAATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGAGAATTCATTGCATTTTTGGGCGTCGCCGGTMACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCCGGCAAAGGCATTCGGAAGCCGACCAAGCCTCGATCGGAAGCCGACCAAGCCTCGACAAACTTCCGGCCAACTTCGGACCTCATAACAGCAGGGGCCGGTTTTCTTCGCGCTTTTTCTCATGTTTTATAGTAAAACAGTACATCGTATTGTATTTTATTTATTACAAAAAATAATACATATAAGGGGGATTTAGAAAAAAATTACGAAAGTCGGAACATCATCACACAAGACACGCTGGTGAGAAGTTGGCCCGGAAAACTAACTTCATGTTCTTGTTCAACGCATATTGGCCATCTATCTACTTTTCAAACACCGCCGATCCCTCAGATGGCATGTACAAAAGCTCATGATAGATGGAACTGGTGAGTCGACGAACTATTATAGAACGATCGGGTTCATGTGGGCTATGTACTTGCCGTCGGCGCCGTTTAGGCTGTCCGGTTCGCAGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>272 126 100 72 69 63 53 49 49 48 37 23 16 8 7 2 2 2 2</canonical_bands>
                <polymorphic_bands>335 126 100 72 69 53 49 49 48 37 23 16 8 7 2 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTACTCAATGTTGTGAAGTTGA</pcr_primer_p1>
		<pcr_primer_p2>TGTTATGAGGTCCGAAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>216</pcr_amplicon_size>
		<canonical_amplicon>AATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGAGAATTCATTGCATTTTTGGGCGTCGCCGGTCACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCCGGCAAAGGCATTCGGAAGCCGACCAAGCCTCGATCGGAAGCCGACCAAGCCTCGACAAACTTCCGGCCAACTTCGGACCTCATAACA</canonical_amplicon>
		<polymorphic_amplicon>AATTACTCAATGTTGTGAAGTTGATAGATTTTCATTAATGTTTTAGGAGAATTCATTGCATTTTTGGGCGTCGCCGGTMACTTCTGGCCGGCGTTTGGTCGGCTTCTGGACGGAGGTTGGTCAGATTCCGGCAAAGGCATTCGGAAGCCGACCAAGCCTCGATCGGAAGCCGACCAAGCCTCGACAAACTTCCGGCCAACTTCGGACCTCATAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34964</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>129438</contig_pos>
        <strand></strand>
        <context>tctgtaagag[A/G]tataaacatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACTTTTTCTGAAGACAATTGGAGCTCAATTATCCCAACTTCTGTAAGAG</left_flank>
        <right_flank>TATAAACATTTTGTCAACTGATAAAATAATTGTGATATTATGATAAACAG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTATAGGCCTCTTATTTTTATATCATATCCAATAAAATTAATTTGAGATAATCGAGTTTGAAGGAAGTTCTGACTCACCTTGTGGCATCATTCCACTGGTGACACACTTTAAGAACCGACAGAACCGGCAGCTTCCTCCTCGCTTTGTTGGATCTGAATCGTTTCCTCCTTGAGTTTGAAGACGTCAACCTGACTTACCATGAGTAATATTGCACTGTCTGTTAGAGCACGAATACACCTTTTGGTCAGAAACACTTCTTCGGAAAAATGCTCCACAAGCCGCGCAACTGATGGCACCAAAATGATAACCCTCGGCTTTGTCCGAGCAAATTGAGCAGATCATTTCTTGAGGTGGAGCGCTGGAAAAAAGAAGTTTTCGGTGCAACAAGGTTCGAAGGTTAGGTATTAAGATTCTAAGATCCTAAGTTAGGACGTCTAGCAATTGGGTACTTTTTCTGAAGACAATTGGAGCTCAATTATCCCAACTTCTGTAAGAGATATAAACATTTTGTCAACTGATAAAATAATTGTGATATTATGATAAACAGTTTATCAGTTGACAACTTTTTGATATCTCATATAGGAACCAAGACAATTTAGCTCAAAGTGGAAAACTACTCTGTTGAAAACTGGGGTGCAGTACAATTTGATCCCCAGGAAATCTGCATTAGAAGTCATCCGATTAGACTAAAAATATTCTGGGTGCACTAAAGAAAACTAGAGCTTTAATTTTGCAGTTGAGACCTTTTTGTACAAATTCATTCAAATGATATATATCAAAATGTTTGTGACATTTTACAAAGCATTTTATCAGTTAACGGATTTTTTATATTTCTTATTGGAACCGAGATGATTGAGTGGAAAGTTGACGGGGTCGCTATTATCTCGGTGTTTTCCTGTTTCATAATGGCAATGAATACAGTTGAAGTATATTTTTTCACTGTAGCCATTCTTTGAGCTATTTTCAGTTTCACGCGCTCCAATTATTTCAGACCTTT</canonical>
            <polymorphic>TTTTATAGGCCTCTTATTTTTATATCATATCCAATAAAATTAATTTGAGATAATCGAGTTTGAAGGAAGTTCTGACTCACCTTGTGGCATCATTCCACTGGTGACACACTTTAAGAACCGACAGAACCGGCAGCTTCCTCCTCGCTTTGTTGGATCTGAATCGTTTCCTCCTTGAGTTTGAAGACGTCAACCTGACTTACCATGAGTAATATTGCACTGTCTGTTAGAGCACGAATACACCTTTTGGTCAGAAACACTTCTTCGGAAAAATGCTCCACAAGCCGCGCAACTGATGGCACCAAAATGATAACCCTCGGCTTTGTCCGAGCAAATTGAGCAGATCATTTCTTGAGGTGGAGCGCTGGAAAAAAGAAGTTTTCGGTGCAACAAGGTTCGAAGGTTAGGTATTAAGATTCTAAGATCCTAAGTTAGGACGTCTAGCAATTGGGTACTTTTTCTGAAGACAATTGGAGCTCAATTATCCCAACTTCTGTAAGAGRTATAAACATTTTGTCAACTGATAAAATAATTGTGATATTATGATAAACAGTTTATCAGTTGACAACTTTTTGATATCTCATATAGGAACCAAGACAATTTAGCTCAAAGTGGAAAACTACTCTGTTGAAAACTGGGGTGCAGTACAATTTGATCCCCAGGAAATCTGCATTAGAAGTCATCCGATTAGACTAAAAATATTCTGGGTGCACTAAAGAAAACTAGAGCTTTAATTTTGCAGTTGAGACCTTTTTGTACAAATTCATTCAAATGATATATATCAAAATGTTTGTGACATTTTACAAAGCATTTTATCAGTTAACGGATTTTTTATATTTCTTATTGGAACCGAGATGATTGAGTGGAAAGTTGACGGGGTCGCTATTATCTCGGTGTTTTCCTGTTTCATAATGGCAATGAATACAGTTGAAGTATATTTTTTCACTGTAGCCATTCTTTGAGCTATTTTCAGTTTCACGCGCTCCAATTATTTCAGACCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTAGCAATTGGGTACTTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CTGGGGATCAAATTGTACTG</pcr_primer_p2>
		<pcr_amplicon_size>224</pcr_amplicon_size>
		<canonical_amplicon>GTCTAGCAATTGGGTACTTTTTCTGAAGACAATTGGAGCTCAATTATCCCAACTTCTGTAAGAGATATAAACATTTTGTCAACTGATAAAATAATTGTGATATTATGATAAACAGTTTATCAGTTGACAACTTTTTGATATCTCATATAGGAACCAAGACAATTTAGCTCAAAGTGGAAAACTACTCTGTTGAAAACTGGGGTGCAGTACAATTTGATCCCCAG</canonical_amplicon>
		<polymorphic_amplicon>GTCTAGCAATTGGGTACTTTTTCTGAAGACAATTGGAGCTCAATTATCCCAACTTCTGTAAGAGRTATAAACATTTTGTCAACTGATAAAATAATTGTGATATTATGATAAACAGTTTATCAGTTGACAACTTTTTGATATCTCATATAGGAACCAAGACAATTTAGCTCAAAGTGGAAAACTACTCTGTTGAAAACTGGGGTGCAGTACAATTTGATCCCCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34965</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>130039</contig_pos>
        <strand></strand>
        <context>AATTGGGGAA[C/A]AATGAATTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATCGCATAAAAATTTCTTTCTGTTTCAAAAGGCCCATAAAAATTGGGGAA</left_flank>
        <right_flank>AATGAATTGTTTAATAGTATCATCTTGGTTAGTGATATTCTTTCTAAACA</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCAAAGTGGAAAACTACTCTGTTGAAAACTGGGGTGCAGTACAATTTGATCCCCAGGAAATCTGCATTAGAAGTCATCCGATTAGACTAAAAATATTCTGGGTGCACTAAAGAAAACTAGAGCTTTAATTTTGCAGTTGAGACCTTTTTGTACAAATTCATTCAAATGATATATATCAAAATGTTTGTGACATTTTACAAAGCATTTTATCAGTTAACGGATTTTTTATATTTCTTATTGGAACCGAGATGATTGAGTGGAAAGTTGACGGGGTCGCTATTATCTCGGTGTTTTCCTGTTTCATAATGGCAATGAATACAGTTGAAGTATATTTTTTCACTGTAGCCATTCTTTGAGCTATTTTCAGTTTCACGCGCTCCAATTATTTCAGACCTTTTGACTAATAAAAATCAAGTTATTTTTCAATTCAAAATGGGTCAATTTAGCATCGCATAAAAATTTCTTTCTGTTTCAAAAGGCCCATAAAAATTGGGGAACAATGAATTGTTTAATAGTATCATCTTGGTTAGTGATATTCTTTCTAAACAATCTACAGTAACCCACTTACCTGCTCCAAACCGCTGGGCTGTAGTCCATTGTCCAATAGCACTGGCTACTACTATTCCAATCAGTACTTGTCGAATAAAGATTCATGAATAAAAGGAGGCGGGGTTACCTTTTCCAGAATTCCAGGACAGGTATGGGATATACAAAAAAACACACTCTCTCTCGACGCGACTTGACAAATTTTTATACTAGTTTACAAGACTTTAATCCTTAAAGGGGAGGGGTGGGAGAAAAAAGGTTCCAGTTGTCTCCCCCTCGGATTATCCTCACCCCGAGGAGAGGTATCGATAGGCCGAGTTGATAAGAGGGGAAATCCATCTTCATTGGGAATGATACACTGATTTGGCACAAGAGGATGATGAAAATCGGTGTGACTTCTTCTTGTGACGTTGCGGCTTGTTGTCGTAGGGAATGAGTCAGGAGACGTCTCG</canonical>
            <polymorphic>GCTCAAAGTGGAAAACTACTCTGTTGAAAACTGGGGTGCAGTACAATTTGATCCCCAGGAAATCTGCATTAGAAGTCATCCGATTAGACTAAAAATATTCTGGGTGCACTAAAGAAAACTAGAGCTTTAATTTTGCAGTTGAGACCTTTTTGTACAAATTCATTCAAATGATATATATCAAAATGTTTGTGACATTTTACAAAGCATTTTATCAGTTAACGGATTTTTTATATTTCTTATTGGAACCGAGATGATTGAGTGGAAAGTTGACGGGGTCGCTATTATCTCGGTGTTTTCCTGTTTCATAATGGCAATGAATACAGTTGAAGTATATTTTTTCACTGTAGCCATTCTTTGAGCTATTTTCAGTTTCACGCGCTCCAATTATTTCAGACCTTTTGACTAATAAAAATCAAGTTATTTTTCAATTCAAAATGGGTCAATTTAGCATCGCATAAAAATTTCTTTCTGTTTCAAAAGGCCCATAAAAATTGGGGAAMAATGAATTGTTTAATAGTATCATCTTGGTTAGTGATATTCTTTCTAAACAATCTACAGTAACCCACTTACCTGCTCCAAACCGCTGGGCTGTAGTCCATTGTCCAATAGCACTGGCTACTACTATTCCAATCAGTACTTGTCGAATAAAGATTCATGAATAAAAGGAGGCGGGGTTACCTTTTCCAGAATTCCAGGACAGGTATGGGATATACAAAAAAACACACTCTCTCTCGACGCGACTTGACAAATTTTTATACTAGTTTACAAGACTTTAATCCTTAAAGGGGAGGGGTGGGAGAAAAAAGGTTCCAGTTGTCTCCCCCTCGGATTATCCTCACCCCGAGGAGAGGTATCGATAGGCCGAGTTGATAAGAGGGGAAATCCATCTTCATTGGGAATGATACACTGATTTGGCACAAGAGGATGATGAAAATCGGTGTGACTTCTTCTTGTGACGTTGCGGCTTGTTGTCGTAGGGAATGAGTCAGGAGACGTCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTATTTCAGACCTTTTGACT</pcr_primer_p1>
		<pcr_primer_p2>GATTGGAATAGTAGTAGCCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAATTATTTCAGACCTTTTGACTAATAAAAATCAAGTTATTTTTCAATTCAAAATGGGTCAATTTAGCATCGCATAAAAATTTCTTTCTGTTTCAAAAGGCCCATAAAAATTGGGGAACAATGAATTGTTTAATAGTATCATCTTGGTTAGTGATATTCTTTCTAAACAATCTACAGTAACCCACTTACCTGCTCCAAACCGCTGGGCTGTAGTCCATTGTCCAATAGCACTGGCTACTACTATTCCAATC</canonical_amplicon>
		<polymorphic_amplicon>CAATTATTTCAGACCTTTTGACTAATAAAAATCAAGTTATTTTTCAATTCAAAATGGGTCAATTTAGCATCGCATAAAAATTTCTTTCTGTTTCAAAAGGCCCATAAAAATTGGGGAAMAATGAATTGTTTAATAGTATCATCTTGGTTAGTGATATTCTTTCTAAACAATCTACAGTAACCCACTTACCTGCTCCAAACCGCTGGGCTGTAGTCCATTGTCCAATAGCACTGGCTACTACTATTCCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34966</snp_id>
        <super_contig>c009600893.Contig1</super_contig>
        <contig_pos>138229</contig_pos>
        <strand>+</strand>
        <context>AAATTCTATA[A/T]TACCGTAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGACAGAGCGTTCCATTTTTCAAGTTTGTCACTATTTTCAAAATTCTATA</left_flank>
        <right_flank>TACCGTAAAACCTGTATTGGAAGTCTTATCAAGTGTTTGGAACAGTAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTATTGATGAAGAAGTGAATTTATGGGTGAACAAAAGTTACAAAACATTTTTCAGATTCCGAATTTTTAATCATATTCCAACGACTTCTGAAAACTTACTAGACCGAATTCACTTGAAAAGGGAATATTCTAACACGTGATTTAAAAAAAACTATCGAAATAAAATTTGTCAATCTTATTTTTGTAAAATCCTATCAGTGGAAGGATCATACGTATTCAGATTTAAACAAATACTAAAATTTCATAGGTCTCCGAAATTATAAAACTACACAAAAATAGTGATCGAAGAAATACATATTCGTCATAAAATGTTTTGGGAGGTTTTATTTCCTAGTTCACTTTTTTTTCGTGTTACAGGAGTTTTATAAGGTTAGTGTAGTTTAGATAGTTTAGTTTAGATATCATTACATGTTGAGGATGCCTGGTGGAACTGATTTGAAAAATTTCAGACAGAGCGTTCCATTTTTCAAGTTTGTCACTATTTTCAAAATTCTATAATACCGTAAAACCTGTATTGGAAGTCTTATCAAGTGTTTGGAACAGTAAAAAATAAATTTTACATTGAAACACTTGTTTAGAAAAAATTATATTATAGATCTTTCATTTTCTCTATTATTGAATCGGCTTGTATATAGTTTCTCCTAAAGCTTTCGAACTTTTGGCTGAAACTTTTGGCTTTTGGCTGAAAATCTTGAAGATTTTGGACTTTGGGTTATATCTAGATGTAGAATTATTCTACTCATTGTAAATTGAAGTTTTATTATATAAAACATGGTTAGTGGCGTTGTTTATCTTTGCGACGGAACAAGAGCTTACCTGAGAGTTTTAAAGATTATATAGAGTTTTAGATGGTTGAAATTTTTGTTTTCCTGGGAAGAACGGTCCCGAAAACAGGATCTCCGGTGCCATCATAGGACCACCGGTCCCAAGAATTTCGACAACGGTCCCATTGTTTTGACAACGGTCTCATTGTTCCGATAACAGTCCCAAAGTTCCGA</canonical>
            <polymorphic>TTTTATTGATGAAGAAGTGAATTTATGGGTGAACAAAAGTTACAAAACATTTTTCAGATTCCGAATTTTTAATCATATTCCAACGACTTCTGAAAACTTACTAGACCGAATTCACTTGAAAAGGGAATATTCTAACACGTGATTTAAAAAAAACTATCGAAATAAAATTTGTCAATCTTATTTTTGTAAAATCCTATCAGTGGAAGGATCATACGTATTCAGATTTAAACAAATACTAAAATTTCATAGGTCTCCGAAATTATAAAACTACACAAAAATAGTGATCGAAGAAATACATATTCGTCATAAAATGTTTTGGGAGGTTTTATTTCCTAGTTCACTTTTTTTTCGTGTTACAGGAGTTTTATAAGGTTAGTGTAGTTTAGATAGTTTAGTTTAGATATCATTACATGTTGAGGATGCCTGGTGGAACTGATTTGAAAAATTTCAGACAGAGCGTTCCATTTTTCAAGTTTGTCACTATTTTCAAAATTCTATAWTACCGTAAAACCTGTATTGGAAGTCTTATCAAGTGTTTGGAACAGTAAAAAATAAATTTTACATTGAAACACTTGTTTAGAAAAAATTATATTATAGATCTTTCATTTTCTCTATTATTGAATCGGCTTGTATATAGTTTCTCCTAAAGCTTTCGAACTTTTGGCTGAAACTTTTGGCTTTTGGCTGAAAATCTTGAAGATTTTGGACTTTGGGTTATATCTAGATGTAGAATTATTCTACTCATTGTAAATTGAAGTTTTATTATATAAAACATGGTTAGTGGCGTTGTTTATCTTTGCGACGGAACAAGAGCTTACCTGAGAGTTTTAAAGATTATATAGAGTTTTAGATGGTTGAAATTTTTGTTTTCCTGGGAAGAACGGTCCCGAAAACAGGATCTCCGGTGCCATCATAGGACCACCGGTCCCAAGAATTTCGACAACGGTCCCATTGTTTTGACAACGGTCTCATTGTTCCGATAACAGTCCCAAAGTTCCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCGTGTTACAGGAGTTTTAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTAAACAAGTGTTTCAATG</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TTTTCGTGTTACAGGAGTTTTATAAGGTTAGTGTAGTTTAGATAGTTTAGTTTAGATATCATTACATGTTGAGGATGCCTGGTGGAACTGATTTGAAAAATTTCAGACAGAGCGTTCCATTTTTCAAGTTTGTCACTATTTTCAAAATTCTATAATACCGTAAAACCTGTATTGGAAGTCTTATCAAGTGTTTGGAACAGTAAAAAATAAATTTTACATTGAAACACTTGTTTAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCGTGTTACAGGAGTTTTATAAGGTTAGTGTAGTTTAGATAGTTTAGTTTAGATATCATTACATGTTGAGGATGCCTGGTGGAACTGATTTGAAAAATTTCAGACAGAGCGTTCCATTTTTCAAGTTTGTCACTATTTTCAAAATTCTATAWTACCGTAAAACCTGTATTGGAAGTCTTATCAAGTGTTTGGAACAGTAAAAAATAAATTTTACATTGAAACACTTGTTTAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34967</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>43517</contig_pos>
        <strand>+</strand>
        <context>TTCGATTTCT[A/G]AGGAATGTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCTGATCGCTGCGTTGGGCATTCACTCATTCTCCAACTATTCGATTTCT</left_flank>
        <right_flank>AGGAATGTCACGAGGAGCTATCATTTTTGGGTTACGGTATGATTGACGTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGAAGGACCGGACAGTTGGCGCCAGCTTCGATTTTTAGGCAAAAAAGCTTTTTTTTTTTGGAAAAAAAAGTTGTTTTTATCATCTAATTTTAAGCTAAATTGTAAATATTGAATTTGTAAATGGTTAAATAAAATTTTGAAGAAATTTTGCTGAATTTTTTCCGGAGGTGGGATCGGACGGAAAATTGCATTTTTGAAGCAAAATAACTTTTTTCTGAAAAACTAATTTTTTTGTTAAAAAATTCTCAAAAAGTAATCAAAAAAAAATTTTTTTTTGATAAATTTCGACCAAAAAATACCCATCCGGGCCTTCAAAACTTTTCAAGGCCCGACCCGGCCCGGCCTTCAACGATTTTCGCAAGTATGGAAAAAATTGGGAATAATCCGGATGTTTCGAGAATCCAGAATCGAAACATTTCAATTTTTAAGGAAAAATACAAAACCAGCGATCTGATCGCTGCGTTGGGCATTCACTCATTCTCCAACTATTCGATTTCTGAGGAATGTCACGAGGAGCTATCATTTTTGGGTTACGGTATGATTGACGTGGCTCGCCACGTCAGACATCACACAACAATGGCGCCGTCGACGATGAGCGAGCAGGAGAGAAGAAAGTATTTGATACCAAGTGAGAGATTATAGTGGTGGCCTAGGCTTCGACCAGTCGGATGCTAGGCCAGAGAGTGTTGGAAGGTGGCCTGGGTCATGACCTAGAATTTCGAAAAACAAACACTCCGGTTTCAAATAGAATGGCCTAACTTTCTCAACGTGGTTTTTTAGTCCACCGGAGTTGATCGTCCAGAAGATGTCTTATTGTAACATGTACCTGATGTGTTTCTTAGGTCTTTAACATGGTGGCCTAACTTTCGCAAGTTAAGTTTTCTAGGCCACCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>CGGAAGGACCGGACAGTTGGCGCCAGCTTCGATTTTTAGGCAAAAAAGCTTTTTTTTTTTGGAAAAAAAAGTTGTTTTTATCATCTAATTTTAAGCTAAATTGTAAATATTGAATTTGTAAATGGTTAAATAAAATTTTGAAGAAATTTTGCTGAATTTTTTCCGGAGGTGGGATCGGACGGAAAATTGCATTTTTGAAGCAAAATAACTTTTTTCTGAAAAACTAATTTTTTTGTTAAAAAATTCTCAAAAAGTAATCAAAAAAAAATTTTTTTTTGATAAATTTCGACCAAAAAATACCCATCCGGGCCTTCAAAACTTTTCAAGGCCCGACCCGGCCCGGCCTTCAACGATTTTCGCAAGTATGGAAAAAATTGGGAATAATCCGGATGTTTCGAGAATCCAGAATCGAAACATTTCAATTTTTAAGGAAAAATACAAAACCAGCGATCTGATCGCTGCGTTGGGCATTCACTCATTCTCCAACTATTCGATTTCTRAGGAATGTCACGAGGAGCTATCATTTTTGGGTTACGGTATGATTGACGTGGCTCGCCACGTCAGACATCACACAACAATGGCGCCGTCGACGATGAGCGAGCAGGAGAGAAGAAAGTATTTGATACCAAGTGAGAGATTATAGTGGTGGCCTAGGCTTCGACCAGTCGGATGCTAGGCCAGAGAGTGTTGGAAGGTGGCCTGGGTCATGACCTAGAATTTCGAAAAACAAACACTCCGGTTTCAAATAGAATGGCCTAACTTTCTCAACGTGGTTTTTTAGTCCACCGGAGTTGATCGTCCAGAAGATGTCTTATTGTAACATGTACCTGATGTGTTTCTTAGGTCTTTAACATGGTGGCCTAACTTTCGCAAGTTAAGTTTTCTAGGCCACCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>332 236 177 105 64 46 40</canonical_bands>
                <polymorphic_bands>332 236 177 110 105 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAATCCAGAATCGAAACATT</pcr_primer_p1>
		<pcr_primer_p2>CCACCACTATAATCTCTCACTTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGAATCCAGAATCGAAACATTTCAATTTTTAAGGAAAAATACAAAACCAGCGATCTGATCGCTGCGTTGGGCATTCACTCATTCTCCAACTATTCGATTTCTGAGGAATGTCACGAGGAGCTATCATTTTTGGGTTACGGTATGATTGACGTGGCTCGCCACGTCAGACATCACACAACAATGGCGCCGTCGACGATGAGCGAGCAGGAGAGAAGAAAGTATTTGATACCAAGTGAGAGATTATAGTGGTGG</canonical_amplicon>
		<polymorphic_amplicon>AGAATCCAGAATCGAAACATTTCAATTTTTAAGGAAAAATACAAAACCAGCGATCTGATCGCTGCGTTGGGCATTCACTCATTCTCCAACTATTCGATTTCTRAGGAATGTCACGAGGAGCTATCATTTTTGGGTTACGGTATGATTGACGTGGCTCGCCACGTCAGACATCACACAACAATGGCGCCGTCGACGATGAGCGAGCAGGAGAGAAGAAAGTATTTGATACCAAGTGAGAGATTATAGTGGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34968</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>77936</contig_pos>
        <strand></strand>
        <context>CGCAAAAAAA[T/A]GATATTATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAGGATTGACGAATTTCGTAATGTATCTAGTCCCATTTGTCGCAAAAAAA</left_flank>
        <right_flank>GATATTATTTTTTCATTTTGAAAATGAAAAATAAGTCATTTTTGGGATTC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTCCTCTCTCTAAATTTCAAAAACCAATACCTCCAGTTGTATAAATCCAATTTTCACATAAAATTTTTTCCCCCAATTCCCTGGAAATCTCTCTTTATTAACATTTCGCAACTAACACAATCAGCTGCTCTCCCTCTCCTAGTTTTTCCCATAAACAGGTGTGTTTCATAATTTTTATTTTGCTCATTTTCTGAAACCTACAAATCGGATATTAGCCCTGAAAAAAGTTTATCTGAAAAAAAGTTAATTCACATTAAGAAATCATATAATCGGTTTAAGATGTCACGAGTGCATTTCTAAATTTTCAGAGGAAAAATCTTCGAAAAGAAAATGTTCGATAAATTTGAAAATTCTCGAATTTTGAAATTTTTTTACGCAAAATTTCAGATTTCAAAAAAAAATTTTTTCAACATTTCAGAAATCTATTTTGGGATTCATTTTCAGACAAGGATTGACGAATTTCGTAATGTATCTAGTCCCATTTGTCGCAAAAAAATGATATTATTTTTTCATTTTGAAAATGAAAAATAAGTCATTTTTGGGATTCATTCAGATTTTTGCAAAGTTTTGAAAAATCGAAAATTTTGTTTTTTGAATTTCTGAAATGATTGAAATTCGGAAGTTCTGTAACTTTGAGATTCTGAATGTCACAGAATGAAAACTTCAGAAGCTCAGCAATCGGGATATTCAGAAATCCAAAAGTAGAGAAAATCTGAAATTCCGAGATTATGTGATTTTAATAGTCTACTGAAATTTGAAAATTCGAACAGTCTGTAAGTTTTTCAGATTTTCAGATATTTTTAAATCTGAAATTCTGAAATCGTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTTTCGAAAATTTCCAATTGCCAAAACC</canonical>
            <polymorphic>CTTTTCCTCTCTCTAAATTTCAAAAACCAATACCTCCAGTTGTATAAATCCAATTTTCACATAAAATTTTTTCCCCCAATTCCCTGGAAATCTCTCTTTATTAACATTTCGCAACTAACACAATCAGCTGCTCTCCCTCTCCTAGTTTTTCCCATAAACAGGTGTGTTTCATAATTTTTATTTTGCTCATTTTCTGAAACCTACAAATCGGATATTAGCCCTGAAAAAAGTTTATCTGAAAAAAAGTTAATTCACATTAAGAAATCATATAATCGGTTTAAGATGTCACGAGTGCATTTCTAAATTTTCAGAGGAAAAATCTTCGAAAAGAAAATGTTCGATAAATTTGAAAATTCTCGAATTTTGAAATTTTTTTACGCAAAATTTCAGATTTCAAAAAAAAATTTTTTCAACATTTCAGAAATCTATTTTGGGATTCATTTTCAGACAAGGATTGACGAATTTCGTAATGTATCTAGTCCCATTTGTCGCAAAAAAAWGATATTATTTTTTCATTTTGAAAATGAAAAATAAGTCATTTTTGGGATTCATTCAGATTTTTGCAAAGTTTTGAAAAATCGAAAATTTTGTTTTTTGAATTTCTGAAATGATTGAAATTCGGAAGTTCTGTAACTTTGAGATTCTGAATGTCACAGAATGAAAACTTCAGAAGCTCAGCAATCGGGATATTCAGAAATCCAAAAGTAGAGAAAATCTGAAATTCCGAGATTATGTGATTTTAATAGTCTACTGAAATTTGAAAATTCGAACAGTCTGTAAGTTTTTCAGATTTTCAGATATTTTTAAATCTGAAATTCTGAAATCGTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTTTCGAAAATTTCCAATTGCCAAAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAATCTATTTTGGGATTCATT</pcr_primer_p1>
		<pcr_primer_p2>GAAGTTTTCATTCTGTGACATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGAAATCTATTTTGGGATTCATTTTCAGACAAGGATTGACGAATTTCGTAATGTATCTAGTCCCATTTGTCGCAAAAAAATGATATTATTTTTTCATTTTGAAAATGAAAAATAAGTCATTTTTGGGATTCATTCAGATTTTTGCAAAGTTTTGAAAAATCGAAAATTTTGTTTTTTGAATTTCTGAAATGATTGAAATTCGGAAGTTCTGTAACTTTGAGATTCTGAATGTCACAGAATGAAAACTTC</canonical_amplicon>
		<polymorphic_amplicon>AGAAATCTATTTTGGGATTCATTTTCAGACAAGGATTGACGAATTTCGTAATGTATCTAGTCCCATTTGTCGCAAAAAAAWGATATTATTTTTTCATTTTGAAAATGAAAAATAAGTCATTTTTGGGATTCATTCAGATTTTTGCAAAGTTTTGAAAAATCGAAAATTTTGTTTTTTGAATTTCTGAAATGATTGAAATTCGGAAGTTCTGTAACTTTGAGATTCTGAATGTCACAGAATGAAAACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34969</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>78176</contig_pos>
        <strand></strand>
        <context>TTATGTGATT[T/C]TAATAGTCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCAGAAATCCAAAAGTAGAGAAAATCTGAAATTCCGAGATTATGTGATT</left_flank>
        <right_flank>TAATAGTCTACTGAAATTTGAAAATTCGAACAGTCTGTAAGTTTTTCAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAGTTAATTCACATTAAGAAATCATATAATCGGTTTAAGATGTCACGAGTGCATTTCTAAATTTTCAGAGGAAAAATCTTCGAAAAGAAAATGTTCGATAAATTTGAAAATTCTCGAATTTTGAAATTTTTTTACGCAAAATTTCAGATTTCAAAAAAAAATTTTTTCAACATTTCAGAAATCTATTTTGGGATTCATTTTCAGACAAGGATTGACGAATTTCGTAATGTATCTAGTCCCATTTGTCGCAAAAAAATGATATTATTTTTTCATTTTGAAAATGAAAAATAAGTCATTTTTGGGATTCATTCAGATTTTTGCAAAGTTTTGAAAAATCGAAAATTTTGTTTTTTGAATTTCTGAAATGATTGAAATTCGGAAGTTCTGTAACTTTGAGATTCTGAATGTCACAGAATGAAAACTTCAGAAGCTCAGCAATCGGGATATTCAGAAATCCAAAAGTAGAGAAAATCTGAAATTCCGAGATTATGTGATTTTAATAGTCTACTGAAATTTGAAAATTCGAACAGTCTGTAAGTTTTTCAGATTTTCAGATATTTTTAAATCTGAAATTCTGAAATCGTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTTTCGAAAATTTCCAATTGCCAAAACCCTGAAATTATGCTCCAAGTGTAACTTTTCTAGATGGGTGATCCATAGAAAAAAAGTTTTTCTTGTCTTTGACACCCTGTGAGATGTCTAAAAAGTGTCCATTATTGATGACCTCTATCAATGAAAAATGAATAGAAATTGAAGCGTCTTTTTCCCTTTTTCCCCTTTTTCTTCGTTTTTTTTTTGCTCGGTAGTGTTTTTCTTGAAATTCAGGAATTTCAGAATTTTCAGAATTTCCGGA</canonical>
            <polymorphic>AAAAAGTTAATTCACATTAAGAAATCATATAATCGGTTTAAGATGTCACGAGTGCATTTCTAAATTTTCAGAGGAAAAATCTTCGAAAAGAAAATGTTCGATAAATTTGAAAATTCTCGAATTTTGAAATTTTTTTACGCAAAATTTCAGATTTCAAAAAAAAATTTTTTCAACATTTCAGAAATCTATTTTGGGATTCATTTTCAGACAAGGATTGACGAATTTCGTAATGTATCTAGTCCCATTTGTCGCAAAAAAATGATATTATTTTTTCATTTTGAAAATGAAAAATAAGTCATTTTTGGGATTCATTCAGATTTTTGCAAAGTTTTGAAAAATCGAAAATTTTGTTTTTTGAATTTCTGAAATGATTGAAATTCGGAAGTTCTGTAACTTTGAGATTCTGAATGTCACAGAATGAAAACTTCAGAAGCTCAGCAATCGGGATATTCAGAAATCCAAAAGTAGAGAAAATCTGAAATTCCGAGATTATGTGATTYTAATAGTCTACTGAAATTTGAAAATTCGAACAGTCTGTAAGTTTTTCAGATTTTCAGATATTTTTAAATCTGAAATTCTGAAATCGTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTTTCGAAAATTTCCAATTGCCAAAACCCTGAAATTATGCTCCAAGTGTAACTTTTCTAGATGGGTGATCCATAGAAAAAAAGTTTTTCTTGTCTTTGACACCCTGTGAGATGTCTAAAAAGTGTCCATTATTGATGACCTCTATCAATGAAAAATGAATAGAAATTGAAGCGTCTTTTTCCCTTTTTCCCCTTTTTCTTCGTTTTTTTTTTGCTCGGTAGTGTTTTTCTTGAAATTCAGGAATTTCAGAATTTTCAGAATTTCCGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>462 436 64 21 10 7</canonical_bands>
                <polymorphic_bands>526 436 21 10 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATATTCAGAAATCCAAAAGTAGAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAACGAGAATTGGAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>290</pcr_amplicon_size>
		<canonical_amplicon>GATATTCAGAAATCCAAAAGTAGAGAAAATCTGAAATTCCGAGATTATGTGATTTTAATAGTCTACTGAAATTTGAAAATTCGAACAGTCTGTAAGTTTTTCAGATTTTCAGATATTTTTAAATCTGAAATTCTGAAATCGTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GATATTCAGAAATCCAAAAGTAGAGAAAATCTGAAATTCCGAGATTATGTGATTYTAATAGTCTACTGAAATTTGAAAATTCGAACAGTCTGTAAGTTTTTCAGATTTTCAGATATTTTTAAATCTGAAATTCTGAAATCGTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34970</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>78207</contig_pos>
        <strand></strand>
        <context>AAAATTCGAA[C/A]AGTCTGTAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATTCCGAGATTATGTGATTTTAATAGTCTACTGAAATTTGAAAATTCGAA</left_flank>
        <right_flank>AGTCTGTAAGTTTTTCAGATTTTCAGATATTTTTAAATCTGAAATTCTGA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGGTTTAAGATGTCACGAGTGCATTTCTAAATTTTCAGAGGAAAAATCTTCGAAAAGAAAATGTTCGATAAATTTGAAAATTCTCGAATTTTGAAATTTTTTTACGCAAAATTTCAGATTTCAAAAAAAAATTTTTTCAACATTTCAGAAATCTATTTTGGGATTCATTTTCAGACAAGGATTGACGAATTTCGTAATGTATCTAGTCCCATTTGTCGCAAAAAAATGATATTATTTTTTCATTTTGAAAATGAAAAATAAGTCATTTTTGGGATTCATTCAGATTTTTGCAAAGTTTTGAAAAATCGAAAATTTTGTTTTTTGAATTTCTGAAATGATTGAAATTCGGAAGTTCTGTAACTTTGAGATTCTGAATGTCACAGAATGAAAACTTCAGAAGCTCAGCAATCGGGATATTCAGAAATCCAAAAGTAGAGAAAATCTGAAATTCCGAGATTATGTGATTTTAATAGTCTACTGAAATTTGAAAATTCGAACAGTCTGTAAGTTTTTCAGATTTTCAGATATTTTTAAATCTGAAATTCTGAAATCGTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTTTCGAAAATTTCCAATTGCCAAAACCCTGAAATTATGCTCCAAGTGTAACTTTTCTAGATGGGTGATCCATAGAAAAAAAGTTTTTCTTGTCTTTGACACCCTGTGAGATGTCTAAAAAGTGTCCATTATTGATGACCTCTATCAATGAAAAATGAATAGAAATTGAAGCGTCTTTTTCCCTTTTTCCCCTTTTTCTTCGTTTTTTTTTTGCTCGGTAGTGTTTTTCTTGAAATTCAGGAATTTCAGAATTTTCAGAATTTCCGGATTCTTTGATTTCAAAAATAAAGTTTTAGAAA</canonical>
            <polymorphic>ATCGGTTTAAGATGTCACGAGTGCATTTCTAAATTTTCAGAGGAAAAATCTTCGAAAAGAAAATGTTCGATAAATTTGAAAATTCTCGAATTTTGAAATTTTTTTACGCAAAATTTCAGATTTCAAAAAAAAATTTTTTCAACATTTCAGAAATCTATTTTGGGATTCATTTTCAGACAAGGATTGACGAATTTCGTAATGTATCTAGTCCCATTTGTCGCAAAAAAATGATATTATTTTTTCATTTTGAAAATGAAAAATAAGTCATTTTTGGGATTCATTCAGATTTTTGCAAAGTTTTGAAAAATCGAAAATTTTGTTTTTTGAATTTCTGAAATGATTGAAATTCGGAAGTTCTGTAACTTTGAGATTCTGAATGTCACAGAATGAAAACTTCAGAAGCTCAGCAATCGGGATATTCAGAAATCCAAAAGTAGAGAAAATCTGAAATTCCGAGATTATGTGATTTTAATAGTCTACTGAAATTTGAAAATTCGAAMAGTCTGTAAGTTTTTCAGATTTTCAGATATTTTTAAATCTGAAATTCTGAAATCGTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTTTCGAAAATTTCCAATTGCCAAAACCCTGAAATTATGCTCCAAGTGTAACTTTTCTAGATGGGTGATCCATAGAAAAAAAGTTTTTCTTGTCTTTGACACCCTGTGAGATGTCTAAAAAGTGTCCATTATTGATGACCTCTATCAATGAAAAATGAATAGAAATTGAAGCGTCTTTTTCCCTTTTTCCCCTTTTTCTTCGTTTTTTTTTTGCTCGGTAGTGTTTTTCTTGAAATTCAGGAATTTCAGAATTTTCAGAATTTCCGGATTCTTTGATTTCAAAAATAAAGTTTTAGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATTCCGAGATTATGTGATT</pcr_primer_p1>
		<pcr_primer_p2>AAAAACGAGAATTGGAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>GAAATTCCGAGATTATGTGATTTTAATAGTCTACTGAAATTTGAAAATTCGAACAGTCTGTAAGTTTTTCAGATTTTCAGATATTTTTAAATCTGAAATTCTGAAATCGTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAAATTCCGAGATTATGTGATTTTAATAGTCTACTGAAATTTGAAAATTCGAAMAGTCTGTAAGTTTTTCAGATTTTCAGATATTTTTAAATCTGAAATTCTGAAATCGTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34971</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>78233</contig_pos>
        <strand></strand>
        <context>CAGATTTTCA[G/A]ATATTTTTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCTACTGAAATTTGAAAATTCGAACAGTCTGTAAGTTTTTCAGATTTTCA</left_flank>
        <right_flank>ATATTTTTAAATCTGAAATTCTGAAATCGTGAGGTTCTGAATTTCTGAAG</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTAAATTTTCAGAGGAAAAATCTTCGAAAAGAAAATGTTCGATAAATTTGAAAATTCTCGAATTTTGAAATTTTTTTACGCAAAATTTCAGATTTCAAAAAAAAATTTTTTCAACATTTCAGAAATCTATTTTGGGATTCATTTTCAGACAAGGATTGACGAATTTCGTAATGTATCTAGTCCCATTTGTCGCAAAAAAATGATATTATTTTTTCATTTTGAAAATGAAAAATAAGTCATTTTTGGGATTCATTCAGATTTTTGCAAAGTTTTGAAAAATCGAAAATTTTGTTTTTTGAATTTCTGAAATGATTGAAATTCGGAAGTTCTGTAACTTTGAGATTCTGAATGTCACAGAATGAAAACTTCAGAAGCTCAGCAATCGGGATATTCAGAAATCCAAAAGTAGAGAAAATCTGAAATTCCGAGATTATGTGATTTTAATAGTCTACTGAAATTTGAAAATTCGAACAGTCTGTAAGTTTTTCAGATTTTCAGATATTTTTAAATCTGAAATTCTGAAATCGTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTTTCGAAAATTTCCAATTGCCAAAACCCTGAAATTATGCTCCAAGTGTAACTTTTCTAGATGGGTGATCCATAGAAAAAAAGTTTTTCTTGTCTTTGACACCCTGTGAGATGTCTAAAAAGTGTCCATTATTGATGACCTCTATCAATGAAAAATGAATAGAAATTGAAGCGTCTTTTTCCCTTTTTCCCCTTTTTCTTCGTTTTTTTTTTGCTCGGTAGTGTTTTTCTTGAAATTCAGGAATTTCAGAATTTTCAGAATTTCCGGATTCTTTGATTTCAAAAATAAAGTTTTAGAAAAAATCGAACTTTCGAAAGTCTAAAAA</canonical>
            <polymorphic>TTCTAAATTTTCAGAGGAAAAATCTTCGAAAAGAAAATGTTCGATAAATTTGAAAATTCTCGAATTTTGAAATTTTTTTACGCAAAATTTCAGATTTCAAAAAAAAATTTTTTCAACATTTCAGAAATCTATTTTGGGATTCATTTTCAGACAAGGATTGACGAATTTCGTAATGTATCTAGTCCCATTTGTCGCAAAAAAATGATATTATTTTTTCATTTTGAAAATGAAAAATAAGTCATTTTTGGGATTCATTCAGATTTTTGCAAAGTTTTGAAAAATCGAAAATTTTGTTTTTTGAATTTCTGAAATGATTGAAATTCGGAAGTTCTGTAACTTTGAGATTCTGAATGTCACAGAATGAAAACTTCAGAAGCTCAGCAATCGGGATATTCAGAAATCCAAAAGTAGAGAAAATCTGAAATTCCGAGATTATGTGATTTTAATAGTCTACTGAAATTTGAAAATTCGAACAGTCTGTAAGTTTTTCAGATTTTCARATATTTTTAAATCTGAAATTCTGAAATCGTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTTTCGAAAATTTCCAATTGCCAAAACCCTGAAATTATGCTCCAAGTGTAACTTTTCTAGATGGGTGATCCATAGAAAAAAAGTTTTTCTTGTCTTTGACACCCTGTGAGATGTCTAAAAAGTGTCCATTATTGATGACCTCTATCAATGAAAAATGAATAGAAATTGAAGCGTCTTTTTCCCTTTTTCCCCTTTTTCTTCGTTTTTTTTTTGCTCGGTAGTGTTTTTCTTGAAATTCAGGAATTTCAGAATTTTCAGAATTTCCGGATTCTTTGATTTCAAAAATAAAGTTTTAGAAAAAATCGAACTTTCGAAAGTCTAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>306 109 79 68 63 49 31 28 27 26 24 24 24 24 17 16 15 13 9 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>306 109 79 68 63 49 31 28 27 26 24 24 24 24 23 17 16 13 9 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATTCCGAGATTATGTGATT</pcr_primer_p1>
		<pcr_primer_p2>AAAAACGAGAATTGGAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>GAAATTCCGAGATTATGTGATTTTAATAGTCTACTGAAATTTGAAAATTCGAACAGTCTGTAAGTTTTTCAGATTTTCAGATATTTTTAAATCTGAAATTCTGAAATCGTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAAATTCCGAGATTATGTGATTTTAATAGTCTACTGAAATTTGAAAATTCGAACAGTCTGTAAGTTTTTCAGATTTTCARATATTTTTAAATCTGAAATTCTGAAATCGTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34972</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>78247</contig_pos>
        <strand></strand>
        <context>TTTTTAAATC[T/G]GAAATTCTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AAAATTCGAACAGTCTGTAAGTTTTTCAGATTTTCAGATATTTTTAAATC</left_flank>
        <right_flank>GAAATTCTGAAATCGTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGAAAAATCTTCGAAAAGAAAATGTTCGATAAATTTGAAAATTCTCGAATTTTGAAATTTTTTTACGCAAAATTTCAGATTTCAAAAAAAAATTTTTTCAACATTTCAGAAATCTATTTTGGGATTCATTTTCAGACAAGGATTGACGAATTTCGTAATGTATCTAGTCCCATTTGTCGCAAAAAAATGATATTATTTTTTCATTTTGAAAATGAAAAATAAGTCATTTTTGGGATTCATTCAGATTTTTGCAAAGTTTTGAAAAATCGAAAATTTTGTTTTTTGAATTTCTGAAATGATTGAAATTCGGAAGTTCTGTAACTTTGAGATTCTGAATGTCACAGAATGAAAACTTCAGAAGCTCAGCAATCGGGATATTCAGAAATCCAAAAGTAGAGAAAATCTGAAATTCCGAGATTATGTGATTTTAATAGTCTACTGAAATTTGAAAATTCGAACAGTCTGTAAGTTTTTCAGATTTTCAGATATTTTTAAATCTGAAATTCTGAAATCGTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTTTCGAAAATTTCCAATTGCCAAAACCCTGAAATTATGCTCCAAGTGTAACTTTTCTAGATGGGTGATCCATAGAAAAAAAGTTTTTCTTGTCTTTGACACCCTGTGAGATGTCTAAAAAGTGTCCATTATTGATGACCTCTATCAATGAAAAATGAATAGAAATTGAAGCGTCTTTTTCCCTTTTTCCCCTTTTTCTTCGTTTTTTTTTTGCTCGGTAGTGTTTTTCTTGAAATTCAGGAATTTCAGAATTTTCAGAATTTCCGGATTCTTTGATTTCAAAAATAAAGTTTTAGAAAAAATCGAACTTTCGAAAGTCTAAAAAATTCAAAAACTATA</canonical>
            <polymorphic>AGGAAAAATCTTCGAAAAGAAAATGTTCGATAAATTTGAAAATTCTCGAATTTTGAAATTTTTTTACGCAAAATTTCAGATTTCAAAAAAAAATTTTTTCAACATTTCAGAAATCTATTTTGGGATTCATTTTCAGACAAGGATTGACGAATTTCGTAATGTATCTAGTCCCATTTGTCGCAAAAAAATGATATTATTTTTTCATTTTGAAAATGAAAAATAAGTCATTTTTGGGATTCATTCAGATTTTTGCAAAGTTTTGAAAAATCGAAAATTTTGTTTTTTGAATTTCTGAAATGATTGAAATTCGGAAGTTCTGTAACTTTGAGATTCTGAATGTCACAGAATGAAAACTTCAGAAGCTCAGCAATCGGGATATTCAGAAATCCAAAAGTAGAGAAAATCTGAAATTCCGAGATTATGTGATTTTAATAGTCTACTGAAATTTGAAAATTCGAACAGTCTGTAAGTTTTTCAGATTTTCAGATATTTTTAAATCKGAAATTCTGAAATCGTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTTTCGAAAATTTCCAATTGCCAAAACCCTGAAATTATGCTCCAAGTGTAACTTTTCTAGATGGGTGATCCATAGAAAAAAAGTTTTTCTTGTCTTTGACACCCTGTGAGATGTCTAAAAAGTGTCCATTATTGATGACCTCTATCAATGAAAAATGAATAGAAATTGAAGCGTCTTTTTCCCTTTTTCCCCTTTTTCTTCGTTTTTTTTTTGCTCGGTAGTGTTTTTCTTGAAATTCAGGAATTTCAGAATTTTCAGAATTTCCGGATTCTTTGATTTCAAAAATAAAGTTTTAGAAAAAATCGAACTTTCGAAAGTCTAAAAAATTCAAAAACTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATTCCGAGATTATGTGATT</pcr_primer_p1>
		<pcr_primer_p2>AAAAACGAGAATTGGAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>GAAATTCCGAGATTATGTGATTTTAATAGTCTACTGAAATTTGAAAATTCGAACAGTCTGTAAGTTTTTCAGATTTTCAGATATTTTTAAATCTGAAATTCTGAAATCGTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAAATTCCGAGATTATGTGATTTTAATAGTCTACTGAAATTTGAAAATTCGAACAGTCTGTAAGTTTTTCAGATTTTCAGATATTTTTAAATCKGAAATTCTGAAATCGTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34973</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>78262</contig_pos>
        <strand></strand>
        <context>TTCTGAAATC[G/A]TGAGGTTCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGTAAGTTTTTCAGATTTTCAGATATTTTTAAATCTGAAATTCTGAAATC</left_flank>
        <right_flank>TGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGAAAATGTTCGATAAATTTGAAAATTCTCGAATTTTGAAATTTTTTTACGCAAAATTTCAGATTTCAAAAAAAAATTTTTTCAACATTTCAGAAATCTATTTTGGGATTCATTTTCAGACAAGGATTGACGAATTTCGTAATGTATCTAGTCCCATTTGTCGCAAAAAAATGATATTATTTTTTCATTTTGAAAATGAAAAATAAGTCATTTTTGGGATTCATTCAGATTTTTGCAAAGTTTTGAAAAATCGAAAATTTTGTTTTTTGAATTTCTGAAATGATTGAAATTCGGAAGTTCTGTAACTTTGAGATTCTGAATGTCACAGAATGAAAACTTCAGAAGCTCAGCAATCGGGATATTCAGAAATCCAAAAGTAGAGAAAATCTGAAATTCCGAGATTATGTGATTTTAATAGTCTACTGAAATTTGAAAATTCGAACAGTCTGTAAGTTTTTCAGATTTTCAGATATTTTTAAATCTGAAATTCTGAAATCGTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTTTCGAAAATTTCCAATTGCCAAAACCCTGAAATTATGCTCCAAGTGTAACTTTTCTAGATGGGTGATCCATAGAAAAAAAGTTTTTCTTGTCTTTGACACCCTGTGAGATGTCTAAAAAGTGTCCATTATTGATGACCTCTATCAATGAAAAATGAATAGAAATTGAAGCGTCTTTTTCCCTTTTTCCCCTTTTTCTTCGTTTTTTTTTTGCTCGGTAGTGTTTTTCTTGAAATTCAGGAATTTCAGAATTTTCAGAATTTCCGGATTCTTTGATTTCAAAAATAAAGTTTTAGAAAAAATCGAACTTTCGAAAGTCTAAAAAATTCAAAAACTATAACAAAATTTTCAAAA</canonical>
            <polymorphic>AAAGAAAATGTTCGATAAATTTGAAAATTCTCGAATTTTGAAATTTTTTTACGCAAAATTTCAGATTTCAAAAAAAAATTTTTTCAACATTTCAGAAATCTATTTTGGGATTCATTTTCAGACAAGGATTGACGAATTTCGTAATGTATCTAGTCCCATTTGTCGCAAAAAAATGATATTATTTTTTCATTTTGAAAATGAAAAATAAGTCATTTTTGGGATTCATTCAGATTTTTGCAAAGTTTTGAAAAATCGAAAATTTTGTTTTTTGAATTTCTGAAATGATTGAAATTCGGAAGTTCTGTAACTTTGAGATTCTGAATGTCACAGAATGAAAACTTCAGAAGCTCAGCAATCGGGATATTCAGAAATCCAAAAGTAGAGAAAATCTGAAATTCCGAGATTATGTGATTTTAATAGTCTACTGAAATTTGAAAATTCGAACAGTCTGTAAGTTTTTCAGATTTTCAGATATTTTTAAATCTGAAATTCTGAAATCRTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTTTCGAAAATTTCCAATTGCCAAAACCCTGAAATTATGCTCCAAGTGTAACTTTTCTAGATGGGTGATCCATAGAAAAAAAGTTTTTCTTGTCTTTGACACCCTGTGAGATGTCTAAAAAGTGTCCATTATTGATGACCTCTATCAATGAAAAATGAATAGAAATTGAAGCGTCTTTTTCCCTTTTTCCCCTTTTTCTTCGTTTTTTTTTTGCTCGGTAGTGTTTTTCTTGAAATTCAGGAATTTCAGAATTTTCAGAATTTCCGGATTCTTTGATTTCAAAAATAAAGTTTTAGAAAAAATCGAACTTTCGAAAGTCTAAAAAATTCAAAAACTATAACAAAATTTTCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>327 192 131 99 92 83 34 19 16 7</canonical_bands>
                <polymorphic_bands>327 284 131 99 83 34 19 16 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTGTAAGTTTTTCAGATTTTCA</pcr_primer_p1>
		<pcr_primer_p2>TTACACTTGGAGCATAATTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTCTGTAAGTTTTTCAGATTTTCAGATATTTTTAAATCTGAAATTCTGAAATCGTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTTTCGAAAATTTCCAATTGCCAAAACCCTGAAATTATGCTCCAAGTGTAA</canonical_amplicon>
		<polymorphic_amplicon>GTCTGTAAGTTTTTCAGATTTTCAGATATTTTTAAATCTGAAATTCTGAAATCRTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTTTCGAAAATTTCCAATTGCCAAAACCCTGAAATTATGCTCCAAGTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34974</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>78300</contig_pos>
        <strand></strand>
        <context>ATCATTTGAC[A/G]TTCCGCTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTCTGAAATCGTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGAC</left_flank>
        <right_flank>TTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAATTTTTTTACGCAAAATTTCAGATTTCAAAAAAAAATTTTTTCAACATTTCAGAAATCTATTTTGGGATTCATTTTCAGACAAGGATTGACGAATTTCGTAATGTATCTAGTCCCATTTGTCGCAAAAAAATGATATTATTTTTTCATTTTGAAAATGAAAAATAAGTCATTTTTGGGATTCATTCAGATTTTTGCAAAGTTTTGAAAAATCGAAAATTTTGTTTTTTGAATTTCTGAAATGATTGAAATTCGGAAGTTCTGTAACTTTGAGATTCTGAATGTCACAGAATGAAAACTTCAGAAGCTCAGCAATCGGGATATTCAGAAATCCAAAAGTAGAGAAAATCTGAAATTCCGAGATTATGTGATTTTAATAGTCTACTGAAATTTGAAAATTCGAACAGTCTGTAAGTTTTTCAGATTTTCAGATATTTTTAAATCTGAAATTCTGAAATCGTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTTTCGAAAATTTCCAATTGCCAAAACCCTGAAATTATGCTCCAAGTGTAACTTTTCTAGATGGGTGATCCATAGAAAAAAAGTTTTTCTTGTCTTTGACACCCTGTGAGATGTCTAAAAAGTGTCCATTATTGATGACCTCTATCAATGAAAAATGAATAGAAATTGAAGCGTCTTTTTCCCTTTTTCCCCTTTTTCTTCGTTTTTTTTTTGCTCGGTAGTGTTTTTCTTGAAATTCAGGAATTTCAGAATTTTCAGAATTTCCGGATTCTTTGATTTCAAAAATAAAGTTTTAGAAAAAATCGAACTTTCGAAAGTCTAAAAAATTCAAAAACTATAACAAAATTTTCAAAATAGATTAAAACTTTTCCCTCATTTTGTTTCTCATCCCC</canonical>
            <polymorphic>TGAAATTTTTTTACGCAAAATTTCAGATTTCAAAAAAAAATTTTTTCAACATTTCAGAAATCTATTTTGGGATTCATTTTCAGACAAGGATTGACGAATTTCGTAATGTATCTAGTCCCATTTGTCGCAAAAAAATGATATTATTTTTTCATTTTGAAAATGAAAAATAAGTCATTTTTGGGATTCATTCAGATTTTTGCAAAGTTTTGAAAAATCGAAAATTTTGTTTTTTGAATTTCTGAAATGATTGAAATTCGGAAGTTCTGTAACTTTGAGATTCTGAATGTCACAGAATGAAAACTTCAGAAGCTCAGCAATCGGGATATTCAGAAATCCAAAAGTAGAGAAAATCTGAAATTCCGAGATTATGTGATTTTAATAGTCTACTGAAATTTGAAAATTCGAACAGTCTGTAAGTTTTTCAGATTTTCAGATATTTTTAAATCTGAAATTCTGAAATCGTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACRTTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTTTCGAAAATTTCCAATTGCCAAAACCCTGAAATTATGCTCCAAGTGTAACTTTTCTAGATGGGTGATCCATAGAAAAAAAGTTTTTCTTGTCTTTGACACCCTGTGAGATGTCTAAAAAGTGTCCATTATTGATGACCTCTATCAATGAAAAATGAATAGAAATTGAAGCGTCTTTTTCCCTTTTTCCCCTTTTTCTTCGTTTTTTTTTTGCTCGGTAGTGTTTTTCTTGAAATTCAGGAATTTCAGAATTTTCAGAATTTCCGGATTCTTTGATTTCAAAAATAAAGTTTTAGAAAAAATCGAACTTTCGAAAGTCTAAAAAATTCAAAAACTATAACAAAATTTTCAAAATAGATTAAAACTTTTCCCTCATTTTGTTTCTCATCCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTGTAAGTTTTTCAGATTTTCA</pcr_primer_p1>
		<pcr_primer_p2>TTACACTTGGAGCATAATTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTCTGTAAGTTTTTCAGATTTTCAGATATTTTTAAATCTGAAATTCTGAAATCGTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTTTCGAAAATTTCCAATTGCCAAAACCCTGAAATTATGCTCCAAGTGTAA</canonical_amplicon>
		<polymorphic_amplicon>GTCTGTAAGTTTTTCAGATTTTCAGATATTTTTAAATCTGAAATTCTGAAATCGTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACRTTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTTTCGAAAATTTCCAATTGCCAAAACCCTGAAATTATGCTCCAAGTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34975</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>78382</contig_pos>
        <strand></strand>
        <context>AGTCAAACAA[A/G]TTTCCTAGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAA</left_flank>
        <right_flank>TTTCCTAGGATCCTCCAATTCTCGTTTTTTCGAAAATTTCCAATTGCCAA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACAAGGATTGACGAATTTCGTAATGTATCTAGTCCCATTTGTCGCAAAAAAATGATATTATTTTTTCATTTTGAAAATGAAAAATAAGTCATTTTTGGGATTCATTCAGATTTTTGCAAAGTTTTGAAAAATCGAAAATTTTGTTTTTTGAATTTCTGAAATGATTGAAATTCGGAAGTTCTGTAACTTTGAGATTCTGAATGTCACAGAATGAAAACTTCAGAAGCTCAGCAATCGGGATATTCAGAAATCCAAAAGTAGAGAAAATCTGAAATTCCGAGATTATGTGATTTTAATAGTCTACTGAAATTTGAAAATTCGAACAGTCTGTAAGTTTTTCAGATTTTCAGATATTTTTAAATCTGAAATTCTGAAATCGTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTTTCGAAAATTTCCAATTGCCAAAACCCTGAAATTATGCTCCAAGTGTAACTTTTCTAGATGGGTGATCCATAGAAAAAAAGTTTTTCTTGTCTTTGACACCCTGTGAGATGTCTAAAAAGTGTCCATTATTGATGACCTCTATCAATGAAAAATGAATAGAAATTGAAGCGTCTTTTTCCCTTTTTCCCCTTTTTCTTCGTTTTTTTTTTGCTCGGTAGTGTTTTTCTTGAAATTCAGGAATTTCAGAATTTTCAGAATTTCCGGATTCTTTGATTTCAAAAATAAAGTTTTAGAAAAAATCGAACTTTCGAAAGTCTAAAAAATTCAAAAACTATAACAAAATTTTCAAAATAGATTAAAACTTTTCCCTCATTTTGTTTCTCATCCCCACATCTTCAGAAGACGTATAACGTAAACGACGACAAAAAAGGGCAAAGAAAATCCCCAAGAGAATTTCGGACCCACTTTTTT</canonical>
            <polymorphic>GACAAGGATTGACGAATTTCGTAATGTATCTAGTCCCATTTGTCGCAAAAAAATGATATTATTTTTTCATTTTGAAAATGAAAAATAAGTCATTTTTGGGATTCATTCAGATTTTTGCAAAGTTTTGAAAAATCGAAAATTTTGTTTTTTGAATTTCTGAAATGATTGAAATTCGGAAGTTCTGTAACTTTGAGATTCTGAATGTCACAGAATGAAAACTTCAGAAGCTCAGCAATCGGGATATTCAGAAATCCAAAAGTAGAGAAAATCTGAAATTCCGAGATTATGTGATTTTAATAGTCTACTGAAATTTGAAAATTCGAACAGTCTGTAAGTTTTTCAGATTTTCAGATATTTTTAAATCTGAAATTCTGAAATCGTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAARTTTCCTAGGATCCTCCAATTCTCGTTTTTTCGAAAATTTCCAATTGCCAAAACCCTGAAATTATGCTCCAAGTGTAACTTTTCTAGATGGGTGATCCATAGAAAAAAAGTTTTTCTTGTCTTTGACACCCTGTGAGATGTCTAAAAAGTGTCCATTATTGATGACCTCTATCAATGAAAAATGAATAGAAATTGAAGCGTCTTTTTCCCTTTTTCCCCTTTTTCTTCGTTTTTTTTTTGCTCGGTAGTGTTTTTCTTGAAATTCAGGAATTTCAGAATTTTCAGAATTTCCGGATTCTTTGATTTCAAAAATAAAGTTTTAGAAAAAATCGAACTTTCGAAAGTCTAAAAAATTCAAAAACTATAACAAAATTTTCAAAATAGATTAAAACTTTTCCCTCATTTTGTTTCTCATCCCCACATCTTCAGAAGACGTATAACGTAAACGACGACAAAAAAGGGCAAAGAAAATCCCCAAGAGAATTTCGGACCCACTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>225 123 111 104 66 63 51 36 35 23 20 19 18 15 14 14 14 9 9 8 8 8 7</canonical_bands>
                <polymorphic_bands>225 123 111 104 66 63 51 50 35 23 20 19 18 15 14 14 9 9 8 8 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>131 123 111 104 70 66 63 51 35 23 20 19 18 18 18 17 15 14 14 14 9 9 8 8 8 7 7</canonical_bands>
                <polymorphic_bands>131 123 111 104 70 66 63 51 35 32 23 20 19 18 18 17 15 14 14 9 9 8 8 8 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTGTAAGTTTTTCAGATTTTCA</pcr_primer_p1>
		<pcr_primer_p2>TTACACTTGGAGCATAATTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTCTGTAAGTTTTTCAGATTTTCAGATATTTTTAAATCTGAAATTCTGAAATCGTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTTTCGAAAATTTCCAATTGCCAAAACCCTGAAATTATGCTCCAAGTGTAA</canonical_amplicon>
		<polymorphic_amplicon>GTCTGTAAGTTTTTCAGATTTTCAGATATTTTTAAATCTGAAATTCTGAAATCGTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAARTTTCCTAGGATCCTCCAATTCTCGTTTTTTCGAAAATTTCCAATTGCCAAAACCCTGAAATTATGCTCCAAGTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34976</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>78414</contig_pos>
        <strand></strand>
        <context>TCGTTTTTTC[G/A]AAAATTTCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTTTC</left_flank>
        <right_flank>AAAATTTCCAATTGCCAAAACCCTGAAATTATGCTCCAAGTGTAACTTTT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCCCATTTGTCGCAAAAAAATGATATTATTTTTTCATTTTGAAAATGAAAAATAAGTCATTTTTGGGATTCATTCAGATTTTTGCAAAGTTTTGAAAAATCGAAAATTTTGTTTTTTGAATTTCTGAAATGATTGAAATTCGGAAGTTCTGTAACTTTGAGATTCTGAATGTCACAGAATGAAAACTTCAGAAGCTCAGCAATCGGGATATTCAGAAATCCAAAAGTAGAGAAAATCTGAAATTCCGAGATTATGTGATTTTAATAGTCTACTGAAATTTGAAAATTCGAACAGTCTGTAAGTTTTTCAGATTTTCAGATATTTTTAAATCTGAAATTCTGAAATCGTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTTTCGAAAATTTCCAATTGCCAAAACCCTGAAATTATGCTCCAAGTGTAACTTTTCTAGATGGGTGATCCATAGAAAAAAAGTTTTTCTTGTCTTTGACACCCTGTGAGATGTCTAAAAAGTGTCCATTATTGATGACCTCTATCAATGAAAAATGAATAGAAATTGAAGCGTCTTTTTCCCTTTTTCCCCTTTTTCTTCGTTTTTTTTTTGCTCGGTAGTGTTTTTCTTGAAATTCAGGAATTTCAGAATTTTCAGAATTTCCGGATTCTTTGATTTCAAAAATAAAGTTTTAGAAAAAATCGAACTTTCGAAAGTCTAAAAAATTCAAAAACTATAACAAAATTTTCAAAATAGATTAAAACTTTTCCCTCATTTTGTTTCTCATCCCCACATCTTCAGAAGACGTATAACGTAAACGACGACAAAAAAGGGCAAAGAAAATCCCCAAGAGAATTTCGGACCCACTTTTTTTTCATTATCCTAGGATCTTTATTTTTCTTGTC</canonical>
            <polymorphic>GTCCCATTTGTCGCAAAAAAATGATATTATTTTTTCATTTTGAAAATGAAAAATAAGTCATTTTTGGGATTCATTCAGATTTTTGCAAAGTTTTGAAAAATCGAAAATTTTGTTTTTTGAATTTCTGAAATGATTGAAATTCGGAAGTTCTGTAACTTTGAGATTCTGAATGTCACAGAATGAAAACTTCAGAAGCTCAGCAATCGGGATATTCAGAAATCCAAAAGTAGAGAAAATCTGAAATTCCGAGATTATGTGATTTTAATAGTCTACTGAAATTTGAAAATTCGAACAGTCTGTAAGTTTTTCAGATTTTCAGATATTTTTAAATCTGAAATTCTGAAATCGTGAGGTTCTGAATTTCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTTTCRAAAATTTCCAATTGCCAAAACCCTGAAATTATGCTCCAAGTGTAACTTTTCTAGATGGGTGATCCATAGAAAAAAAGTTTTTCTTGTCTTTGACACCCTGTGAGATGTCTAAAAAGTGTCCATTATTGATGACCTCTATCAATGAAAAATGAATAGAAATTGAAGCGTCTTTTTCCCTTTTTCCCCTTTTTCTTCGTTTTTTTTTTGCTCGGTAGTGTTTTTCTTGAAATTCAGGAATTTCAGAATTTTCAGAATTTCCGGATTCTTTGATTTCAAAAATAAAGTTTTAGAAAAAATCGAACTTTCGAAAGTCTAAAAAATTCAAAAACTATAACAAAATTTTCAAAATAGATTAAAACTTTTCCCTCATTTTGTTTCTCATCCCCACATCTTCAGAAGACGTATAACGTAAACGACGACAAAAAAGGGCAAAGAAAATCCCCAAGAGAATTTCGGACCCACTTTTTTTTCATTATCCTAGGATCTTTATTTTTCTTGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>307 288 210 195</canonical_bands>
                <polymorphic_bands>517 288 195</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>299 210 194 187 102 8</canonical_bands>
                <polymorphic_bands>509 194 187 102 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGAAGTTCCGAATCATTT</pcr_primer_p1>
		<pcr_primer_p2>TTAGACATCTCACAGGGTGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTTTCGAAAATTTCCAATTGCCAAAACCCTGAAATTATGCTCCAAGTGTAACTTTTCTAGATGGGTGATCCATAGAAAAAAAGTTTTTCTTGTCTTTGACACCCTGTGAGATGTCTAA</canonical_amplicon>
		<polymorphic_amplicon>TCTGAAGTTCCGAATCATTTGACATTCCGCTTTTTTCCGATTTTCCGATTTTTTTTTTGAATTTTTGAAATTCAGAATTTTTTTTTCTAAAATTTAGTCAAACAAATTTCCTAGGATCCTCCAATTCTCGTTTTTTCRAAAATTTCCAATTGCCAAAACCCTGAAATTATGCTCCAAGTGTAACTTTTCTAGATGGGTGATCCATAGAAAAAAAGTTTTTCTTGTCTTTGACACCCTGTGAGATGTCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34977</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>80590</contig_pos>
        <strand></strand>
        <context>aattcgtgag[C/T]tttgaatttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAG</left_flank>
        <right_flank>TTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTCATATTTGAGAACTTAGGGTCCCAGTCCGTTGACAGTATTACAATTTCCACCTTAACCAAGATGCCAAACCGAATTCTCATCACCTGATATATAAATCCATCAAAATCGATGATGAGCTACGCGGTCGCAATTCTCCGTTTTTGGCGCACAGTGGGTGGTGACGGCGAAAAAGAGGGAGAAAGATGATGATGATTAAATGAGAAGAAAAATGTGAAAATACACACGCCATATAAGACAATGTCCTTTTCCTTTGAACATCTGCCTCTAAACCCATCATCGCCTTTTTGAAATTCCACTTTTTTTAGGTGACACCCTCTTAAGAATCCGCTTAGTACGCCCTTCTCCAGAGGGAGGTCCGAAAGGGGTGGCTGAATCAATTAAACCTTATTTATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAAAATTCAGGACTACAAAACTTCTGACATTCCGAATTTCTGTTTTCTGAGTTTTTGAATATCTAAATTTCCCAACTTCAAAGGTTCTGAATATCTGAATTTCCTGAGATTTCCAAAACTTTGAATTATCTGAAATTAATAAAATCTGAATTATTCAATTTCTAAAGTTGTGAAATTATTGATTCTATTTTTTCAAAAGATTTTCCAATTTTCTAAAATTTCCTATTTCTCGGGTTTCCTTTTGGATTTGAGTTTTTTTTTTGAATTTTGAGTTTCTGGAATTTTGTTCAAAATTTTGAATTTTTGACTTTTTCAAAGTTTTGGATTTTATAATTCTTTGGAATTTTAAGTTTCAGGAATTTTTTAA</canonical>
            <polymorphic>GATTTCATATTTGAGAACTTAGGGTCCCAGTCCGTTGACAGTATTACAATTTCCACCTTAACCAAGATGCCAAACCGAATTCTCATCACCTGATATATAAATCCATCAAAATCGATGATGAGCTACGCGGTCGCAATTCTCCGTTTTTGGCGCACAGTGGGTGGTGACGGCGAAAAAGAGGGAGAAAGATGATGATGATTAAATGAGAAGAAAAATGTGAAAATACACACGCCATATAAGACAATGTCCTTTTCCTTTGAACATCTGCCTCTAAACCCATCATCGCCTTTTTGAAATTCCACTTTTTTTAGGTGACACCCTCTTAAGAATCCGCTTAGTACGCCCTTCTCCAGAGGGAGGTCCGAAAGGGGTGGCTGAATCAATTAAACCTTATTTATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGYTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAAAATTCAGGACTACAAAACTTCTGACATTCCGAATTTCTGTTTTCTGAGTTTTTGAATATCTAAATTTCCCAACTTCAAAGGTTCTGAATATCTGAATTTCCTGAGATTTCCAAAACTTTGAATTATCTGAAATTAATAAAATCTGAATTATTCAATTTCTAAAGTTGTGAAATTATTGATTCTATTTTTTCAAAAGATTTTCCAATTTTCTAAAATTTCCTATTTCTCGGGTTTCCTTTTGGATTTGAGTTTTTTTTTTGAATTTTGAGTTTCTGGAATTTTGTTCAAAATTTTGAATTTTTGACTTTTTCAAAGTTTTGGATTTTATAATTCTTTGGAATTTTAAGTTTCAGGAATTTTTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>501 377 122</canonical_bands>
                <polymorphic_bands>878 122</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>501 252 125 122</canonical_bands>
                <polymorphic_bands>626 252 122</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGGAAATTTTTCTCTTTTTGT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAATCATTTGCAACTTT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>ATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>ATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGYTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34978</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>80612</contig_pos>
        <strand></strand>
        <context>gaaatttgaa[G/A]tccaraaatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAA</left_flank>
        <right_flank>TCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTCCCAGTCCGTTGACAGTATTACAATTTCCACCTTAACCAAGATGCCAAACCGAATTCTCATCACCTGATATATAAATCCATCAAAATCGATGATGAGCTACGCGGTCGCAATTCTCCGTTTTTGGCGCACAGTGGGTGGTGACGGCGAAAAAGAGGGAGAAAGATGATGATGATTAAATGAGAAGAAAAATGTGAAAATACACACGCCATATAAGACAATGTCCTTTTCCTTTGAACATCTGCCTCTAAACCCATCATCGCCTTTTTGAAATTCCACTTTTTTTAGGTGACACCCTCTTAAGAATCCGCTTAGTACGCCCTTCTCCAGAGGGAGGTCCGAAAGGGGTGGCTGAATCAATTAAACCTTATTTATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAAAATTCAGGACTACAAAACTTCTGACATTCCGAATTTCTGTTTTCTGAGTTTTTGAATATCTAAATTTCCCAACTTCAAAGGTTCTGAATATCTGAATTTCCTGAGATTTCCAAAACTTTGAATTATCTGAAATTAATAAAATCTGAATTATTCAATTTCTAAAGTTGTGAAATTATTGATTCTATTTTTTCAAAAGATTTTCCAATTTTCTAAAATTTCCTATTTCTCGGGTTTCCTTTTGGATTTGAGTTTTTTTTTTGAATTTTGAGTTTCTGGAATTTTGTTCAAAATTTTGAATTTTTGACTTTTTCAAAGTTTTGGATTTTATAATTCTTTGGAATTTTAAGTTTCAGGAATTTTTTAAAGTTCCAGAATTTCCTGGTTTT</canonical>
            <polymorphic>GGTCCCAGTCCGTTGACAGTATTACAATTTCCACCTTAACCAAGATGCCAAACCGAATTCTCATCACCTGATATATAAATCCATCAAAATCGATGATGAGCTACGCGGTCGCAATTCTCCGTTTTTGGCGCACAGTGGGTGGTGACGGCGAAAAAGAGGGAGAAAGATGATGATGATTAAATGAGAAGAAAAATGTGAAAATACACACGCCATATAAGACAATGTCCTTTTCCTTTGAACATCTGCCTCTAAACCCATCATCGCCTTTTTGAAATTCCACTTTTTTTAGGTGACACCCTCTTAAGAATCCGCTTAGTACGCCCTTCTCCAGAGGGAGGTCCGAAAGGGGTGGCTGAATCAATTAAACCTTATTTATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAARTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAAAATTCAGGACTACAAAACTTCTGACATTCCGAATTTCTGTTTTCTGAGTTTTTGAATATCTAAATTTCCCAACTTCAAAGGTTCTGAATATCTGAATTTCCTGAGATTTCCAAAACTTTGAATTATCTGAAATTAATAAAATCTGAATTATTCAATTTCTAAAGTTGTGAAATTATTGATTCTATTTTTTCAAAAGATTTTCCAATTTTCTAAAATTTCCTATTTCTCGGGTTTCCTTTTGGATTTGAGTTTTTTTTTTGAATTTTGAGTTTCTGGAATTTTGTTCAAAATTTTGAATTTTTGACTTTTTCAAAGTTTTGGATTTTATAATTCTTTGGAATTTTAAGTTTCAGGAATTTTTTAAAGTTCCAGAATTTCCTGGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGGAAATTTTTCTCTTTTTGT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAATCATTTGCAACTTT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>ATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>ATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAARTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34979</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>80617</contig_pos>
        <strand></strand>
        <context>ttgaartcca[A/G]aaattcgaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCA</left_flank>
        <right_flank>AAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTCCGTTGACAGTATTACAATTTCCACCTTAACCAAGATGCCAAACCGAATTCTCATCACCTGATATATAAATCCATCAAAATCGATGATGAGCTACGCGGTCGCAATTCTCCGTTTTTGGCGCACAGTGGGTGGTGACGGCGAAAAAGAGGGAGAAAGATGATGATGATTAAATGAGAAGAAAAATGTGAAAATACACACGCCATATAAGACAATGTCCTTTTCCTTTGAACATCTGCCTCTAAACCCATCATCGCCTTTTTGAAATTCCACTTTTTTTAGGTGACACCCTCTTAAGAATCCGCTTAGTACGCCCTTCTCCAGAGGGAGGTCCGAAAGGGGTGGCTGAATCAATTAAACCTTATTTATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAAAATTCAGGACTACAAAACTTCTGACATTCCGAATTTCTGTTTTCTGAGTTTTTGAATATCTAAATTTCCCAACTTCAAAGGTTCTGAATATCTGAATTTCCTGAGATTTCCAAAACTTTGAATTATCTGAAATTAATAAAATCTGAATTATTCAATTTCTAAAGTTGTGAAATTATTGATTCTATTTTTTCAAAAGATTTTCCAATTTTCTAAAATTTCCTATTTCTCGGGTTTCCTTTTGGATTTGAGTTTTTTTTTTGAATTTTGAGTTTCTGGAATTTTGTTCAAAATTTTGAATTTTTGACTTTTTCAAAGTTTTGGATTTTATAATTCTTTGGAATTTTAAGTTTCAGGAATTTTTTAAAGTTCCAGAATTTCCTGGTTTTTTTTA</canonical>
            <polymorphic>CAGTCCGTTGACAGTATTACAATTTCCACCTTAACCAAGATGCCAAACCGAATTCTCATCACCTGATATATAAATCCATCAAAATCGATGATGAGCTACGCGGTCGCAATTCTCCGTTTTTGGCGCACAGTGGGTGGTGACGGCGAAAAAGAGGGAGAAAGATGATGATGATTAAATGAGAAGAAAAATGTGAAAATACACACGCCATATAAGACAATGTCCTTTTCCTTTGAACATCTGCCTCTAAACCCATCATCGCCTTTTTGAAATTCCACTTTTTTTAGGTGACACCCTCTTAAGAATCCGCTTAGTACGCCCTTCTCCAGAGGGAGGTCCGAAAGGGGTGGCTGAATCAATTAAACCTTATTTATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCARAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAAAATTCAGGACTACAAAACTTCTGACATTCCGAATTTCTGTTTTCTGAGTTTTTGAATATCTAAATTTCCCAACTTCAAAGGTTCTGAATATCTGAATTTCCTGAGATTTCCAAAACTTTGAATTATCTGAAATTAATAAAATCTGAATTATTCAATTTCTAAAGTTGTGAAATTATTGATTCTATTTTTTCAAAAGATTTTCCAATTTTCTAAAATTTCCTATTTCTCGGGTTTCCTTTTGGATTTGAGTTTTTTTTTTGAATTTTGAGTTTCTGGAATTTTGTTCAAAATTTTGAATTTTTGACTTTTTCAAAGTTTTGGATTTTATAATTCTTTGGAATTTTAAGTTTCAGGAATTTTTTAAAGTTCCAGAATTTCCTGGTTTTTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGGAAATTTTTCTCTTTTTGT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAATCATTTGCAACTTT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>ATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>ATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCARAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34980</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>80639</contig_pos>
        <strand></strand>
        <context>tttcggaaat[C/T]tcgaaattGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAAT</left_flank>
        <right_flank>TCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCCACCTTAACCAAGATGCCAAACCGAATTCTCATCACCTGATATATAAATCCATCAAAATCGATGATGAGCTACGCGGTCGCAATTCTCCGTTTTTGGCGCACAGTGGGTGGTGACGGCGAAAAAGAGGGAGAAAGATGATGATGATTAAATGAGAAGAAAAATGTGAAAATACACACGCCATATAAGACAATGTCCTTTTCCTTTGAACATCTGCCTCTAAACCCATCATCGCCTTTTTGAAATTCCACTTTTTTTAGGTGACACCCTCTTAAGAATCCGCTTAGTACGCCCTTCTCCAGAGGGAGGTCCGAAAGGGGTGGCTGAATCAATTAAACCTTATTTATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAAAATTCAGGACTACAAAACTTCTGACATTCCGAATTTCTGTTTTCTGAGTTTTTGAATATCTAAATTTCCCAACTTCAAAGGTTCTGAATATCTGAATTTCCTGAGATTTCCAAAACTTTGAATTATCTGAAATTAATAAAATCTGAATTATTCAATTTCTAAAGTTGTGAAATTATTGATTCTATTTTTTCAAAAGATTTTCCAATTTTCTAAAATTTCCTATTTCTCGGGTTTCCTTTTGGATTTGAGTTTTTTTTTTGAATTTTGAGTTTCTGGAATTTTGTTCAAAATTTTGAATTTTTGACTTTTTCAAAGTTTTGGATTTTATAATTCTTTGGAATTTTAAGTTTCAGGAATTTTTTAAAGTTCCAGAATTTCCTGGTTTTTTTTAAATTTTTAAATTTTTCCCAATT</canonical>
            <polymorphic>TTTCCACCTTAACCAAGATGCCAAACCGAATTCTCATCACCTGATATATAAATCCATCAAAATCGATGATGAGCTACGCGGTCGCAATTCTCCGTTTTTGGCGCACAGTGGGTGGTGACGGCGAAAAAGAGGGAGAAAGATGATGATGATTAAATGAGAAGAAAAATGTGAAAATACACACGCCATATAAGACAATGTCCTTTTCCTTTGAACATCTGCCTCTAAACCCATCATCGCCTTTTTGAAATTCCACTTTTTTTAGGTGACACCCTCTTAAGAATCCGCTTAGTACGCCCTTCTCCAGAGGGAGGTCCGAAAGGGGTGGCTGAATCAATTAAACCTTATTTATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATYTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAAAATTCAGGACTACAAAACTTCTGACATTCCGAATTTCTGTTTTCTGAGTTTTTGAATATCTAAATTTCCCAACTTCAAAGGTTCTGAATATCTGAATTTCCTGAGATTTCCAAAACTTTGAATTATCTGAAATTAATAAAATCTGAATTATTCAATTTCTAAAGTTGTGAAATTATTGATTCTATTTTTTCAAAAGATTTTCCAATTTTCTAAAATTTCCTATTTCTCGGGTTTCCTTTTGGATTTGAGTTTTTTTTTTGAATTTTGAGTTTCTGGAATTTTGTTCAAAATTTTGAATTTTTGACTTTTTCAAAGTTTTGGATTTTATAATTCTTTGGAATTTTAAGTTTCAGGAATTTTTTAAAGTTCCAGAATTTCCTGGTTTTTTTTAAATTTTTAAATTTTTCCCAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>301 173 144 95 92 78 55 44 18</canonical_bands>
                <polymorphic_bands>301 173 147 144 95 78 44 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGGAAATTTTTCTCTTTTTGT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAATCATTTGCAACTTT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>ATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>ATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATYTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34981</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>80697</contig_pos>
        <strand>+</strand>
        <context>CTGAAATATT[A/T]ATTTTTTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATT</left_flank>
        <right_flank>ATTTTTTCAAAGTTGCAAATGATTTTGAAAATTCAGGACTACAAAACTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATCGATGATGAGCTACGCGGTCGCAATTCTCCGTTTTTGGCGCACAGTGGGTGGTGACGGCGAAAAAGAGGGAGAAAGATGATGATGATTAAATGAGAAGAAAAATGTGAAAATACACACGCCATATAAGACAATGTCCTTTTCCTTTGAACATCTGCCTCTAAACCCATCATCGCCTTTTTGAAATTCCACTTTTTTTAGGTGACACCCTCTTAAGAATCCGCTTAGTACGCCCTTCTCCAGAGGGAGGTCCGAAAGGGGTGGCTGAATCAATTAAACCTTATTTATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAAAATTCAGGACTACAAAACTTCTGACATTCCGAATTTCTGTTTTCTGAGTTTTTGAATATCTAAATTTCCCAACTTCAAAGGTTCTGAATATCTGAATTTCCTGAGATTTCCAAAACTTTGAATTATCTGAAATTAATAAAATCTGAATTATTCAATTTCTAAAGTTGTGAAATTATTGATTCTATTTTTTCAAAAGATTTTCCAATTTTCTAAAATTTCCTATTTCTCGGGTTTCCTTTTGGATTTGAGTTTTTTTTTTGAATTTTGAGTTTCTGGAATTTTGTTCAAAATTTTGAATTTTTGACTTTTTCAAAGTTTTGGATTTTATAATTCTTTGGAATTTTAAGTTTCAGGAATTTTTTAAAGTTCCAGAATTTCCTGGTTTTTTTTAAATTTTTAAATTTTTCCCAATTTCTAATTTTTCCGAATTTTTTAGAATATTAATTTTCAAAGATTTCGAATTTGTGGAAT</canonical>
            <polymorphic>AAAATCGATGATGAGCTACGCGGTCGCAATTCTCCGTTTTTGGCGCACAGTGGGTGGTGACGGCGAAAAAGAGGGAGAAAGATGATGATGATTAAATGAGAAGAAAAATGTGAAAATACACACGCCATATAAGACAATGTCCTTTTCCTTTGAACATCTGCCTCTAAACCCATCATCGCCTTTTTGAAATTCCACTTTTTTTAGGTGACACCCTCTTAAGAATCCGCTTAGTACGCCCTTCTCCAGAGGGAGGTCCGAAAGGGGTGGCTGAATCAATTAAACCTTATTTATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTWATTTTTTCAAAGTTGCAAATGATTTTGAAAATTCAGGACTACAAAACTTCTGACATTCCGAATTTCTGTTTTCTGAGTTTTTGAATATCTAAATTTCCCAACTTCAAAGGTTCTGAATATCTGAATTTCCTGAGATTTCCAAAACTTTGAATTATCTGAAATTAATAAAATCTGAATTATTCAATTTCTAAAGTTGTGAAATTATTGATTCTATTTTTTCAAAAGATTTTCCAATTTTCTAAAATTTCCTATTTCTCGGGTTTCCTTTTGGATTTGAGTTTTTTTTTTGAATTTTGAGTTTCTGGAATTTTGTTCAAAATTTTGAATTTTTGACTTTTTCAAAGTTTTGGATTTTATAATTCTTTGGAATTTTAAGTTTCAGGAATTTTTTAAAGTTCCAGAATTTCCTGGTTTTTTTTAAATTTTTAAATTTTTCCCAATTTCTAATTTTTCCGAATTTTTTAGAATATTAATTTTCAAAGATTTCGAATTTGTGGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAATTTTTCTCTTTTTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>CGGAATGTCAGAAGTTTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>GGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAAAATTCAGGACTACAAAACTTCTGACATTCCG</canonical_amplicon>
		<polymorphic_amplicon>GGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTWATTTTTTCAAAGTTGCAAATGATTTTGAAAATTCAGGACTACAAAACTTCTGACATTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34982</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>80734</contig_pos>
        <strand></strand>
        <context>GAAAATTCAG[G/A]ACTACAAAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAAAATTCAG</left_flank>
        <right_flank>ACTACAAAACTTCTGACATTCCGAATTTCTGTTTTCTGAGTTTTTGAATA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGGCGCACAGTGGGTGGTGACGGCGAAAAAGAGGGAGAAAGATGATGATGATTAAATGAGAAGAAAAATGTGAAAATACACACGCCATATAAGACAATGTCCTTTTCCTTTGAACATCTGCCTCTAAACCCATCATCGCCTTTTTGAAATTCCACTTTTTTTAGGTGACACCCTCTTAAGAATCCGCTTAGTACGCCCTTCTCCAGAGGGAGGTCCGAAAGGGGTGGCTGAATCAATTAAACCTTATTTATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAAAATTCAGGACTACAAAACTTCTGACATTCCGAATTTCTGTTTTCTGAGTTTTTGAATATCTAAATTTCCCAACTTCAAAGGTTCTGAATATCTGAATTTCCTGAGATTTCCAAAACTTTGAATTATCTGAAATTAATAAAATCTGAATTATTCAATTTCTAAAGTTGTGAAATTATTGATTCTATTTTTTCAAAAGATTTTCCAATTTTCTAAAATTTCCTATTTCTCGGGTTTCCTTTTGGATTTGAGTTTTTTTTTTGAATTTTGAGTTTCTGGAATTTTGTTCAAAATTTTGAATTTTTGACTTTTTCAAAGTTTTGGATTTTATAATTCTTTGGAATTTTAAGTTTCAGGAATTTTTTAAAGTTCCAGAATTTCCTGGTTTTTTTTAAATTTTTAAATTTTTCCCAATTTCTAATTTTTCCGAATTTTTTAGAATATTAATTTTCAAAGATTTCGAATTTGTGGAATTTTCGAATTTCTTAAAAAATCTTGAATTTCCAAATGA</canonical>
            <polymorphic>TTTTGGCGCACAGTGGGTGGTGACGGCGAAAAAGAGGGAGAAAGATGATGATGATTAAATGAGAAGAAAAATGTGAAAATACACACGCCATATAAGACAATGTCCTTTTCCTTTGAACATCTGCCTCTAAACCCATCATCGCCTTTTTGAAATTCCACTTTTTTTAGGTGACACCCTCTTAAGAATCCGCTTAGTACGCCCTTCTCCAGAGGGAGGTCCGAAAGGGGTGGCTGAATCAATTAAACCTTATTTATTGGAAATTTTTCTCTTTTTGTTTTGCGGCAAGATGCTGATTTATGGTCATGTTCGAGGTCTAGGAATTTAAGTTTTTCCAAGAAGTTCACAAATTCGTGAGCTTTGAATTTTAGAAATTTGAAGTCCAAAAATTCGAAAATTTCGGAAATCTCGAAATTGTAGTATCTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAAAATTCAGRACTACAAAACTTCTGACATTCCGAATTTCTGTTTTCTGAGTTTTTGAATATCTAAATTTCCCAACTTCAAAGGTTCTGAATATCTGAATTTCCTGAGATTTCCAAAACTTTGAATTATCTGAAATTAATAAAATCTGAATTATTCAATTTCTAAAGTTGTGAAATTATTGATTCTATTTTTTCAAAAGATTTTCCAATTTTCTAAAATTTCCTATTTCTCGGGTTTCCTTTTGGATTTGAGTTTTTTTTTTGAATTTTGAGTTTCTGGAATTTTGTTCAAAATTTTGAATTTTTGACTTTTTCAAAGTTTTGGATTTTATAATTCTTTGGAATTTTAAGTTTCAGGAATTTTTTAAAGTTCCAGAATTTCCTGGTTTTTTTTAAATTTTTAAATTTTTCCCAATTTCTAATTTTTCCGAATTTTTTAGAATATTAATTTTCAAAGATTTCGAATTTGTGGAATTTTCGAATTTCTTAAAAAATCTTGAATTTCCAAATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>206 173 144 123 95 92 78 55 18 16</canonical_bands>
                <polymorphic_bands>206 187 173 144 123 78 55 18 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTAAAATTTCAACATTCCAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGAATCAATAATTTCACAACTTTAGA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAAAATTCAGGACTACAAAACTTCTGACATTCCGAATTTCTGTTTTCTGAGTTTTTGAATATCTAAATTTCCCAACTTCAAAGGTTCTGAATATCTGAATTTCCTGAGATTTCCAAAACTTTGAATTATCTGAAATTAATAAAATCTGAATTATTCAATTTCTAAAGTTGTGAAATTATTGATTCT</canonical_amplicon>
		<polymorphic_amplicon>CTTAAAATTTCAACATTCCAAAATATTTTAATCTGAAATATTTATTTTTTCAAAGTTGCAAATGATTTTGAAAATTCAGRACTACAAAACTTCTGACATTCCGAATTTCTGTTTTCTGAGTTTTTGAATATCTAAATTTCCCAACTTCAAAGGTTCTGAATATCTGAATTTCCTGAGATTTCCAAAACTTTGAATTATCTGAAATTAATAAAATCTGAATTATTCAATTTCTAAAGTTGTGAAATTATTGATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34983</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>120271</contig_pos>
        <strand>+</strand>
        <context>GAAAATTTTA[A/G]KATGAGGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTA</left_flank>
        <right_flank>GATGAGGAATCAGGATGAATGGTAAATTTTTAAAAAAAATTCAATTTTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGGATTTTTTTCGAATTTTCTCCGGGTCCGCTTTTCCCAAAACCGCCTCAATTTCCATTTTCATCTCTTCATCGATTTTCGGCGCGATTTTTCGTGAATAATTCAGAAGACGTTCGACGTCAACGTCGTCTCCCTCTTCTTCAGAATCCTCCACGTCATCAGAATCTTTCACATGAATCGCCTTCTGGTTCGATGTCAATTTCACTAGAATCTTCTCTCCAGACGCTGTCTCCACCGTCTTTTTCGCCTTTTTCAGTGATAGGTATTCCGAATTTTCTGGATCCAAAATGTTGGGCAACGTCTTCTGAATGATGTCTGAAGGCGTGGTGGCGATGAGGGAGTGGAGTTTGGCGGGGAATTTGAAATTGCGGCCGGATTTTCGATCCATGTAGAGGATGAAGACTTCGATTGCGGCTTGCAGCAGACGACGTGCCGTTGTTGCGCGTTTTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTAAGATGAGGAATCAGGATGAATGGTAAATTTTTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAATTTTTTAAAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGTTTCAGATTTTTTTTTCAAATTGTTTCAATGTCTTTCCAGATTTTCGAAATTCTTACCAAGATCCATTTGACACACTTCTTGTTTTTGAGGAATTTCTTCGTCAAATCAGACGCCAACGGATTGGCGAGCTCTGCTTCCAGAACGGCTTCGTAGCGATTTTTATCTGAAAACATTTGGACGCTTTAAAAATTGTTTTCTCGGTATTTTTGTCATTTTGAGGTGGTGGCCGAACTTTGCAAATTTGGTTTTCCAAGCCACCACTTCAAAATGACCTAAAAATGGCCTGAAATGCGCCTGGTGTGTTTTCTATGCCATTTTGAAGTGATGGCCTAACTTTTGCAAGTTCGATTTTCTAGTCCACCACTTCAAAGTGA</canonical>
            <polymorphic>TTTGGATTTTTTTCGAATTTTCTCCGGGTCCGCTTTTCCCAAAACCGCCTCAATTTCCATTTTCATCTCTTCATCGATTTTCGGCGCGATTTTTCGTGAATAATTCAGAAGACGTTCGACGTCAACGTCGTCTCCCTCTTCTTCAGAATCCTCCACGTCATCAGAATCTTTCACATGAATCGCCTTCTGGTTCGATGTCAATTTCACTAGAATCTTCTCTCCAGACGCTGTCTCCACCGTCTTTTTCGCCTTTTTCAGTGATAGGTATTCCGAATTTTCTGGATCCAAAATGTTGGGCAACGTCTTCTGAATGATGTCTGAAGGCGTGGTGGCGATGAGGGAGTGGAGTTTGGCGGGGAATTTGAAATTGCGGCCGGATTTTCGATCCATGTAGAGGATGAAGACTTCGATTGCGGCTTGCAGCAGACGACGTGCCGTTGTTGCGCGTTTTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTARGATGAGGAATCAGGATGAATGGTAAATTTTTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAATTTTTTAAAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGTTTCAGATTTTTTTTTCAAATTGTTTCAATGTCTTTCCAGATTTTCGAAATTCTTACCAAGATCCATTTGACACACTTCTTGTTTTTGAGGAATTTCTTCGTCAAATCAGACGCCAACGGATTGGCGAGCTCTGCTTCCAGAACGGCTTCGTAGCGATTTTTATCTGAAAACATTTGGACGCTTTAAAAATTGTTTTCTCGGTATTTTTGTCATTTTGAGGTGGTGGCCGAACTTTGCAAATTTGGTTTTCCAAGCCACCACTTCAAAATGACCTAAAAATGGCCTGAAATGCGCCTGGTGTGTTTTCTATGCCATTTTGAAGTGATGGCCTAACTTTTGCAAGTTCGATTTTCTAGTCCACCACTTCAAAGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>497 209 191 33 32 19 11 8</canonical_bands>
                <polymorphic_bands>530 209 191 32 19 11 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGTTTTGAAGACGTTAGAC</pcr_primer_p1>
		<pcr_primer_p2>TCAAATGGATCTTGGTAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCGTTTTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTAAGATGAGGAATCAGGATGAATGGTAAATTTTTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAATTTTTTAAAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGTTTCAGATTTTTTTTTCAAATTGTTTCAATGTCTTTCCAGATTTTCGAAATTCTTACCAAGATCCATTTGA</canonical_amplicon>
		<polymorphic_amplicon>GCGTTTTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTARGATGAGGAATCAGGATGAATGGTAAATTTTTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAATTTTTTAAAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGTTTCAGATTTTTTTTTCAAATTGTTTCAATGTCTTTCCAGATTTTCGAAATTCTTACCAAGATCCATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34984</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>120272</contig_pos>
        <strand>+</strand>
        <context>AAAATTTTAR[G/T]ATGAGGAATC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTAA</left_flank>
        <right_flank>ATGAGGAATCAGGATGAATGGTAAATTTTTAAAAAAAATTCAATTTTTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGATTTTTTTCGAATTTTCTCCGGGTCCGCTTTTCCCAAAACCGCCTCAATTTCCATTTTCATCTCTTCATCGATTTTCGGCGCGATTTTTCGTGAATAATTCAGAAGACGTTCGACGTCAACGTCGTCTCCCTCTTCTTCAGAATCCTCCACGTCATCAGAATCTTTCACATGAATCGCCTTCTGGTTCGATGTCAATTTCACTAGAATCTTCTCTCCAGACGCTGTCTCCACCGTCTTTTTCGCCTTTTTCAGTGATAGGTATTCCGAATTTTCTGGATCCAAAATGTTGGGCAACGTCTTCTGAATGATGTCTGAAGGCGTGGTGGCGATGAGGGAGTGGAGTTTGGCGGGGAATTTGAAATTGCGGCCGGATTTTCGATCCATGTAGAGGATGAAGACTTCGATTGCGGCTTGCAGCAGACGACGTGCCGTTGTTGCGCGTTTTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTAAGATGAGGAATCAGGATGAATGGTAAATTTTTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAATTTTTTAAAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGTTTCAGATTTTTTTTTCAAATTGTTTCAATGTCTTTCCAGATTTTCGAAATTCTTACCAAGATCCATTTGACACACTTCTTGTTTTTGAGGAATTTCTTCGTCAAATCAGACGCCAACGGATTGGCGAGCTCTGCTTCCAGAACGGCTTCGTAGCGATTTTTATCTGAAAACATTTGGACGCTTTAAAAATTGTTTTCTCGGTATTTTTGTCATTTTGAGGTGGTGGCCGAACTTTGCAAATTTGGTTTTCCAAGCCACCACTTCAAAATGACCTAAAAATGGCCTGAAATGCGCCTGGTGTGTTTTCTATGCCATTTTGAAGTGATGGCCTAACTTTTGCAAGTTCGATTTTCTAGTCCACCACTTCAAAGTGAC</canonical>
            <polymorphic>TTGGATTTTTTTCGAATTTTCTCCGGGTCCGCTTTTCCCAAAACCGCCTCAATTTCCATTTTCATCTCTTCATCGATTTTCGGCGCGATTTTTCGTGAATAATTCAGAAGACGTTCGACGTCAACGTCGTCTCCCTCTTCTTCAGAATCCTCCACGTCATCAGAATCTTTCACATGAATCGCCTTCTGGTTCGATGTCAATTTCACTAGAATCTTCTCTCCAGACGCTGTCTCCACCGTCTTTTTCGCCTTTTTCAGTGATAGGTATTCCGAATTTTCTGGATCCAAAATGTTGGGCAACGTCTTCTGAATGATGTCTGAAGGCGTGGTGGCGATGAGGGAGTGGAGTTTGGCGGGGAATTTGAAATTGCGGCCGGATTTTCGATCCATGTAGAGGATGAAGACTTCGATTGCGGCTTGCAGCAGACGACGTGCCGTTGTTGCGCGTTTTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTAAKATGAGGAATCAGGATGAATGGTAAATTTTTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAATTTTTTAAAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGTTTCAGATTTTTTTTTCAAATTGTTTCAATGTCTTTCCAGATTTTCGAAATTCTTACCAAGATCCATTTGACACACTTCTTGTTTTTGAGGAATTTCTTCGTCAAATCAGACGCCAACGGATTGGCGAGCTCTGCTTCCAGAACGGCTTCGTAGCGATTTTTATCTGAAAACATTTGGACGCTTTAAAAATTGTTTTCTCGGTATTTTTGTCATTTTGAGGTGGTGGCCGAACTTTGCAAATTTGGTTTTCCAAGCCACCACTTCAAAATGACCTAAAAATGGCCTGAAATGCGCCTGGTGTGTTTTCTATGCCATTTTGAAGTGATGGCCTAACTTTTGCAAGTTCGATTTTCTAGTCCACCACTTCAAAGTGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGTTTTGAAGACGTTAGAC</pcr_primer_p1>
		<pcr_primer_p2>TCAAATGGATCTTGGTAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCGTTTTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTAAGATGAGGAATCAGGATGAATGGTAAATTTTTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAATTTTTTAAAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGTTTCAGATTTTTTTTTCAAATTGTTTCAATGTCTTTCCAGATTTTCGAAATTCTTACCAAGATCCATTTGA</canonical_amplicon>
		<polymorphic_amplicon>GCGTTTTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTAAKATGAGGAATCAGGATGAATGGTAAATTTTTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAATTTTTTAAAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGTTTCAGATTTTTTTTTCAAATTGTTTCAATGTCTTTCCAGATTTTCGAAATTCTTACCAAGATCCATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34985</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>120301</contig_pos>
        <strand></strand>
        <context>TGGtaaattt[T/A]waaaaaaaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAGAAGGGATGAAAATTTTAAGATGAGGAATCAGGATGAATGGTAAATTT</left_flank>
        <right_flank>TAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAATTTTTTAAAATTTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCTTTTCCCAAAACCGCCTCAATTTCCATTTTCATCTCTTCATCGATTTTCGGCGCGATTTTTCGTGAATAATTCAGAAGACGTTCGACGTCAACGTCGTCTCCCTCTTCTTCAGAATCCTCCACGTCATCAGAATCTTTCACATGAATCGCCTTCTGGTTCGATGTCAATTTCACTAGAATCTTCTCTCCAGACGCTGTCTCCACCGTCTTTTTCGCCTTTTTCAGTGATAGGTATTCCGAATTTTCTGGATCCAAAATGTTGGGCAACGTCTTCTGAATGATGTCTGAAGGCGTGGTGGCGATGAGGGAGTGGAGTTTGGCGGGGAATTTGAAATTGCGGCCGGATTTTCGATCCATGTAGAGGATGAAGACTTCGATTGCGGCTTGCAGCAGACGACGTGCCGTTGTTGCGCGTTTTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTAAGATGAGGAATCAGGATGAATGGTAAATTTTTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAATTTTTTAAAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGTTTCAGATTTTTTTTTCAAATTGTTTCAATGTCTTTCCAGATTTTCGAAATTCTTACCAAGATCCATTTGACACACTTCTTGTTTTTGAGGAATTTCTTCGTCAAATCAGACGCCAACGGATTGGCGAGCTCTGCTTCCAGAACGGCTTCGTAGCGATTTTTATCTGAAAACATTTGGACGCTTTAAAAATTGTTTTCTCGGTATTTTTGTCATTTTGAGGTGGTGGCCGAACTTTGCAAATTTGGTTTTCCAAGCCACCACTTCAAAATGACCTAAAAATGGCCTGAAATGCGCCTGGTGTGTTTTCTATGCCATTTTGAAGTGATGGCCTAACTTTTGCAAGTTCGATTTTCTAGTCCACCACTTCAAAGTGACAAATTGGCCGGACATGCAGTGATGGGAGG</canonical>
            <polymorphic>CGCTTTTCCCAAAACCGCCTCAATTTCCATTTTCATCTCTTCATCGATTTTCGGCGCGATTTTTCGTGAATAATTCAGAAGACGTTCGACGTCAACGTCGTCTCCCTCTTCTTCAGAATCCTCCACGTCATCAGAATCTTTCACATGAATCGCCTTCTGGTTCGATGTCAATTTCACTAGAATCTTCTCTCCAGACGCTGTCTCCACCGTCTTTTTCGCCTTTTTCAGTGATAGGTATTCCGAATTTTCTGGATCCAAAATGTTGGGCAACGTCTTCTGAATGATGTCTGAAGGCGTGGTGGCGATGAGGGAGTGGAGTTTGGCGGGGAATTTGAAATTGCGGCCGGATTTTCGATCCATGTAGAGGATGAAGACTTCGATTGCGGCTTGCAGCAGACGACGTGCCGTTGTTGCGCGTTTTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTAAGATGAGGAATCAGGATGAATGGTAAATTTWTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAATTTTTTAAAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGTTTCAGATTTTTTTTTCAAATTGTTTCAATGTCTTTCCAGATTTTCGAAATTCTTACCAAGATCCATTTGACACACTTCTTGTTTTTGAGGAATTTCTTCGTCAAATCAGACGCCAACGGATTGGCGAGCTCTGCTTCCAGAACGGCTTCGTAGCGATTTTTATCTGAAAACATTTGGACGCTTTAAAAATTGTTTTCTCGGTATTTTTGTCATTTTGAGGTGGTGGCCGAACTTTGCAAATTTGGTTTTCCAAGCCACCACTTCAAAATGACCTAAAAATGGCCTGAAATGCGCCTGGTGTGTTTTCTATGCCATTTTGAAGTGATGGCCTAACTTTTGCAAGTTCGATTTTCTAGTCCACCACTTCAAAGTGACAAATTGGCCGGACATGCAGTGATGGGAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 220 220 40 19</canonical_bands>
                <polymorphic_bands>541 220 220 19</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>467 221 209 33 32 19 11 8</canonical_bands>
                <polymorphic_bands>467 221 209 65 19 11 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGTTTTGAAGACGTTAGAC</pcr_primer_p1>
		<pcr_primer_p2>TCAAATGGATCTTGGTAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCGTTTTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTAAGATGAGGAATCAGGATGAATGGTAAATTTTTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAATTTTTTAAAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGTTTCAGATTTTTTTTTCAAATTGTTTCAATGTCTTTCCAGATTTTCGAAATTCTTACCAAGATCCATTTGA</canonical_amplicon>
		<polymorphic_amplicon>GCGTTTTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTAAGATGAGGAATCAGGATGAATGGTAAATTTWTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAATTTTTTAAAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGTTTCAGATTTTTTTTTCAAATTGTTTCAATGTCTTTCCAGATTTTCGAAATTCTTACCAAGATCCATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34986</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>120302</contig_pos>
        <strand></strand>
        <context>GGtaaatttw[T/A]aaaaaaaatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGAAGGGATGAAAATTTTAAGATGAGGAATCAGGATGAATGGTAAATTTT</left_flank>
        <right_flank>AAAAAAAATTCAATTTTTTTCAATTTTTTTTTAATTTTTTAAAATTTTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTTTTCCCAAAACCGCCTCAATTTCCATTTTCATCTCTTCATCGATTTTCGGCGCGATTTTTCGTGAATAATTCAGAAGACGTTCGACGTCAACGTCGTCTCCCTCTTCTTCAGAATCCTCCACGTCATCAGAATCTTTCACATGAATCGCCTTCTGGTTCGATGTCAATTTCACTAGAATCTTCTCTCCAGACGCTGTCTCCACCGTCTTTTTCGCCTTTTTCAGTGATAGGTATTCCGAATTTTCTGGATCCAAAATGTTGGGCAACGTCTTCTGAATGATGTCTGAAGGCGTGGTGGCGATGAGGGAGTGGAGTTTGGCGGGGAATTTGAAATTGCGGCCGGATTTTCGATCCATGTAGAGGATGAAGACTTCGATTGCGGCTTGCAGCAGACGACGTGCCGTTGTTGCGCGTTTTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTAAGATGAGGAATCAGGATGAATGGTAAATTTTTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAATTTTTTAAAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGTTTCAGATTTTTTTTTCAAATTGTTTCAATGTCTTTCCAGATTTTCGAAATTCTTACCAAGATCCATTTGACACACTTCTTGTTTTTGAGGAATTTCTTCGTCAAATCAGACGCCAACGGATTGGCGAGCTCTGCTTCCAGAACGGCTTCGTAGCGATTTTTATCTGAAAACATTTGGACGCTTTAAAAATTGTTTTCTCGGTATTTTTGTCATTTTGAGGTGGTGGCCGAACTTTGCAAATTTGGTTTTCCAAGCCACCACTTCAAAATGACCTAAAAATGGCCTGAAATGCGCCTGGTGTGTTTTCTATGCCATTTTGAAGTGATGGCCTAACTTTTGCAAGTTCGATTTTCTAGTCCACCACTTCAAAGTGACAAATTGGCCGGACATGCAGTGATGGGAGGA</canonical>
            <polymorphic>GCTTTTCCCAAAACCGCCTCAATTTCCATTTTCATCTCTTCATCGATTTTCGGCGCGATTTTTCGTGAATAATTCAGAAGACGTTCGACGTCAACGTCGTCTCCCTCTTCTTCAGAATCCTCCACGTCATCAGAATCTTTCACATGAATCGCCTTCTGGTTCGATGTCAATTTCACTAGAATCTTCTCTCCAGACGCTGTCTCCACCGTCTTTTTCGCCTTTTTCAGTGATAGGTATTCCGAATTTTCTGGATCCAAAATGTTGGGCAACGTCTTCTGAATGATGTCTGAAGGCGTGGTGGCGATGAGGGAGTGGAGTTTGGCGGGGAATTTGAAATTGCGGCCGGATTTTCGATCCATGTAGAGGATGAAGACTTCGATTGCGGCTTGCAGCAGACGACGTGCCGTTGTTGCGCGTTTTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTAAGATGAGGAATCAGGATGAATGGTAAATTTTWAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAATTTTTTAAAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGTTTCAGATTTTTTTTTCAAATTGTTTCAATGTCTTTCCAGATTTTCGAAATTCTTACCAAGATCCATTTGACACACTTCTTGTTTTTGAGGAATTTCTTCGTCAAATCAGACGCCAACGGATTGGCGAGCTCTGCTTCCAGAACGGCTTCGTAGCGATTTTTATCTGAAAACATTTGGACGCTTTAAAAATTGTTTTCTCGGTATTTTTGTCATTTTGAGGTGGTGGCCGAACTTTGCAAATTTGGTTTTCCAAGCCACCACTTCAAAATGACCTAAAAATGGCCTGAAATGCGCCTGGTGTGTTTTCTATGCCATTTTGAAGTGATGGCCTAACTTTTGCAAGTTCGATTTTCTAGTCCACCACTTCAAAGTGACAAATTGGCCGGACATGCAGTGATGGGAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 221 220 40 19</canonical_bands>
                <polymorphic_bands>540 221 220 19</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>466 222 209 33 32 19 11 8</canonical_bands>
                <polymorphic_bands>466 222 209 65 19 11 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGTTTTGAAGACGTTAGAC</pcr_primer_p1>
		<pcr_primer_p2>TCAAATGGATCTTGGTAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCGTTTTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTAAGATGAGGAATCAGGATGAATGGTAAATTTTTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAATTTTTTAAAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGTTTCAGATTTTTTTTTCAAATTGTTTCAATGTCTTTCCAGATTTTCGAAATTCTTACCAAGATCCATTTGA</canonical_amplicon>
		<polymorphic_amplicon>GCGTTTTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTAAGATGAGGAATCAGGATGAATGGTAAATTTTWAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAATTTTTTAAAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGTTTCAGATTTTTTTTTCAAATTGTTTCAATGTCTTTCCAGATTTTCGAAATTCTTACCAAGATCCATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34987</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>120335</contig_pos>
        <strand></strand>
        <context>attttttttt[A/T]awtttttwaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATGAATGGTAAATTTTTAAAAAAAATTCAATTTTTTTCAATTTTTTTTT</left_flank>
        <right_flank>ATTTTTTAAAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAAT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTCTTCATCGATTTTCGGCGCGATTTTTCGTGAATAATTCAGAAGACGTTCGACGTCAACGTCGTCTCCCTCTTCTTCAGAATCCTCCACGTCATCAGAATCTTTCACATGAATCGCCTTCTGGTTCGATGTCAATTTCACTAGAATCTTCTCTCCAGACGCTGTCTCCACCGTCTTTTTCGCCTTTTTCAGTGATAGGTATTCCGAATTTTCTGGATCCAAAATGTTGGGCAACGTCTTCTGAATGATGTCTGAAGGCGTGGTGGCGATGAGGGAGTGGAGTTTGGCGGGGAATTTGAAATTGCGGCCGGATTTTCGATCCATGTAGAGGATGAAGACTTCGATTGCGGCTTGCAGCAGACGACGTGCCGTTGTTGCGCGTTTTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTAAGATGAGGAATCAGGATGAATGGTAAATTTTTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAATTTTTTAAAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGTTTCAGATTTTTTTTTCAAATTGTTTCAATGTCTTTCCAGATTTTCGAAATTCTTACCAAGATCCATTTGACACACTTCTTGTTTTTGAGGAATTTCTTCGTCAAATCAGACGCCAACGGATTGGCGAGCTCTGCTTCCAGAACGGCTTCGTAGCGATTTTTATCTGAAAACATTTGGACGCTTTAAAAATTGTTTTCTCGGTATTTTTGTCATTTTGAGGTGGTGGCCGAACTTTGCAAATTTGGTTTTCCAAGCCACCACTTCAAAATGACCTAAAAATGGCCTGAAATGCGCCTGGTGTGTTTTCTATGCCATTTTGAAGTGATGGCCTAACTTTTGCAAGTTCGATTTTCTAGTCCACCACTTCAAAGTGACAAATTGGCCGGACATGCAGTGATGGGAGGAAACGCATTTTCTCGAAATACGGAAATGGAATCG</canonical>
            <polymorphic>ATCTCTTCATCGATTTTCGGCGCGATTTTTCGTGAATAATTCAGAAGACGTTCGACGTCAACGTCGTCTCCCTCTTCTTCAGAATCCTCCACGTCATCAGAATCTTTCACATGAATCGCCTTCTGGTTCGATGTCAATTTCACTAGAATCTTCTCTCCAGACGCTGTCTCCACCGTCTTTTTCGCCTTTTTCAGTGATAGGTATTCCGAATTTTCTGGATCCAAAATGTTGGGCAACGTCTTCTGAATGATGTCTGAAGGCGTGGTGGCGATGAGGGAGTGGAGTTTGGCGGGGAATTTGAAATTGCGGCCGGATTTTCGATCCATGTAGAGGATGAAGACTTCGATTGCGGCTTGCAGCAGACGACGTGCCGTTGTTGCGCGTTTTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTAAGATGAGGAATCAGGATGAATGGTAAATTTTTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTWATTTTTTAAAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGTTTCAGATTTTTTTTTCAAATTGTTTCAATGTCTTTCCAGATTTTCGAAATTCTTACCAAGATCCATTTGACACACTTCTTGTTTTTGAGGAATTTCTTCGTCAAATCAGACGCCAACGGATTGGCGAGCTCTGCTTCCAGAACGGCTTCGTAGCGATTTTTATCTGAAAACATTTGGACGCTTTAAAAATTGTTTTCTCGGTATTTTTGTCATTTTGAGGTGGTGGCCGAACTTTGCAAATTTGGTTTTCCAAGCCACCACTTCAAAATGACCTAAAAATGGCCTGAAATGCGCCTGGTGTGTTTTCTATGCCATTTTGAAGTGATGGCCTAACTTTTGCAAGTTCGATTTTCTAGTCCACCACTTCAAAGTGACAAATTGGCCGGACATGCAGTGATGGGAGGAAACGCATTTTCTCGAAATACGGAAATGGAATCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>433 255 209 33 32 19 11 8</canonical_bands>
                <polymorphic_bands>433 255 209 40 33 19 11</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>138 127 98 97 86 73 62 51 43 37 32 32 30 16 13 12 11 10 10 10 7 5</canonical_bands>
                <polymorphic_bands>138 127 98 97 86 73 62 51 43 37 32 32 30 21 16 13 12 10 10 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGTTTTGAAGACGTTAGAC</pcr_primer_p1>
		<pcr_primer_p2>TCAAATGGATCTTGGTAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCGTTTTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTAAGATGAGGAATCAGGATGAATGGTAAATTTTTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAATTTTTTAAAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGTTTCAGATTTTTTTTTCAAATTGTTTCAATGTCTTTCCAGATTTTCGAAATTCTTACCAAGATCCATTTGA</canonical_amplicon>
		<polymorphic_amplicon>GCGTTTTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTAAGATGAGGAATCAGGATGAATGGTAAATTTTTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTWATTTTTTAAAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGTTTCAGATTTTTTTTTCAAATTGTTTCAATGTCTTTCCAGATTTTCGAAATTCTTACCAAGATCCATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34988</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>120337</contig_pos>
        <strand></strand>
        <context>ttttttttwa[T/A]tttttwaaaw</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGAATGGTAAATTTTTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAA</left_flank>
        <right_flank>TTTTTAAAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTTCATCGATTTTCGGCGCGATTTTTCGTGAATAATTCAGAAGACGTTCGACGTCAACGTCGTCTCCCTCTTCTTCAGAATCCTCCACGTCATCAGAATCTTTCACATGAATCGCCTTCTGGTTCGATGTCAATTTCACTAGAATCTTCTCTCCAGACGCTGTCTCCACCGTCTTTTTCGCCTTTTTCAGTGATAGGTATTCCGAATTTTCTGGATCCAAAATGTTGGGCAACGTCTTCTGAATGATGTCTGAAGGCGTGGTGGCGATGAGGGAGTGGAGTTTGGCGGGGAATTTGAAATTGCGGCCGGATTTTCGATCCATGTAGAGGATGAAGACTTCGATTGCGGCTTGCAGCAGACGACGTGCCGTTGTTGCGCGTTTTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTAAGATGAGGAATCAGGATGAATGGTAAATTTTTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAATTTTTTAAAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGTTTCAGATTTTTTTTTCAAATTGTTTCAATGTCTTTCCAGATTTTCGAAATTCTTACCAAGATCCATTTGACACACTTCTTGTTTTTGAGGAATTTCTTCGTCAAATCAGACGCCAACGGATTGGCGAGCTCTGCTTCCAGAACGGCTTCGTAGCGATTTTTATCTGAAAACATTTGGACGCTTTAAAAATTGTTTTCTCGGTATTTTTGTCATTTTGAGGTGGTGGCCGAACTTTGCAAATTTGGTTTTCCAAGCCACCACTTCAAAATGACCTAAAAATGGCCTGAAATGCGCCTGGTGTGTTTTCTATGCCATTTTGAAGTGATGGCCTAACTTTTGCAAGTTCGATTTTCTAGTCCACCACTTCAAAGTGACAAATTGGCCGGACATGCAGTGATGGGAGGAAACGCATTTTCTCGAAATACGGAAATGGAATCGTT</canonical>
            <polymorphic>CTCTTCATCGATTTTCGGCGCGATTTTTCGTGAATAATTCAGAAGACGTTCGACGTCAACGTCGTCTCCCTCTTCTTCAGAATCCTCCACGTCATCAGAATCTTTCACATGAATCGCCTTCTGGTTCGATGTCAATTTCACTAGAATCTTCTCTCCAGACGCTGTCTCCACCGTCTTTTTCGCCTTTTTCAGTGATAGGTATTCCGAATTTTCTGGATCCAAAATGTTGGGCAACGTCTTCTGAATGATGTCTGAAGGCGTGGTGGCGATGAGGGAGTGGAGTTTGGCGGGGAATTTGAAATTGCGGCCGGATTTTCGATCCATGTAGAGGATGAAGACTTCGATTGCGGCTTGCAGCAGACGACGTGCCGTTGTTGCGCGTTTTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTAAGATGAGGAATCAGGATGAATGGTAAATTTTTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAAWTTTTTAAAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGTTTCAGATTTTTTTTTCAAATTGTTTCAATGTCTTTCCAGATTTTCGAAATTCTTACCAAGATCCATTTGACACACTTCTTGTTTTTGAGGAATTTCTTCGTCAAATCAGACGCCAACGGATTGGCGAGCTCTGCTTCCAGAACGGCTTCGTAGCGATTTTTATCTGAAAACATTTGGACGCTTTAAAAATTGTTTTCTCGGTATTTTTGTCATTTTGAGGTGGTGGCCGAACTTTGCAAATTTGGTTTTCCAAGCCACCACTTCAAAATGACCTAAAAATGGCCTGAAATGCGCCTGGTGTGTTTTCTATGCCATTTTGAAGTGATGGCCTAACTTTTGCAAGTTCGATTTTCTAGTCCACCACTTCAAAGTGACAAATTGGCCGGACATGCAGTGATGGGAGGAAACGCATTTTCTCGAAATACGGAAATGGAATCGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>138 127 98 97 86 73 64 51 43 35 32 32 30 16 13 12 11 10 10 10 7 5</canonical_bands>
                <polymorphic_bands>138 127 98 97 86 73 64 51 43 35 32 32 30 21 16 13 12 10 10 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGTTTTGAAGACGTTAGAC</pcr_primer_p1>
		<pcr_primer_p2>TCAAATGGATCTTGGTAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCGTTTTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTAAGATGAGGAATCAGGATGAATGGTAAATTTTTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAATTTTTTAAAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGTTTCAGATTTTTTTTTCAAATTGTTTCAATGTCTTTCCAGATTTTCGAAATTCTTACCAAGATCCATTTGA</canonical_amplicon>
		<polymorphic_amplicon>GCGTTTTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTAAGATGAGGAATCAGGATGAATGGTAAATTTTTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAAWTTTTTAAAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGTTTCAGATTTTTTTTTCAAATTGTTTCAATGTCTTTCCAGATTTTCGAAATTCTTACCAAGATCCATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34989</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>120343</contig_pos>
        <strand></strand>
        <context>ttwawttttt[A/T]aaawtttttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTAAATTTTTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAATTTTTT</left_flank>
        <right_flank>AAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGATTTTCGGCGCGATTTTTCGTGAATAATTCAGAAGACGTTCGACGTCAACGTCGTCTCCCTCTTCTTCAGAATCCTCCACGTCATCAGAATCTTTCACATGAATCGCCTTCTGGTTCGATGTCAATTTCACTAGAATCTTCTCTCCAGACGCTGTCTCCACCGTCTTTTTCGCCTTTTTCAGTGATAGGTATTCCGAATTTTCTGGATCCAAAATGTTGGGCAACGTCTTCTGAATGATGTCTGAAGGCGTGGTGGCGATGAGGGAGTGGAGTTTGGCGGGGAATTTGAAATTGCGGCCGGATTTTCGATCCATGTAGAGGATGAAGACTTCGATTGCGGCTTGCAGCAGACGACGTGCCGTTGTTGCGCGTTTTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTAAGATGAGGAATCAGGATGAATGGTAAATTTTTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAATTTTTTAAAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGTTTCAGATTTTTTTTTCAAATTGTTTCAATGTCTTTCCAGATTTTCGAAATTCTTACCAAGATCCATTTGACACACTTCTTGTTTTTGAGGAATTTCTTCGTCAAATCAGACGCCAACGGATTGGCGAGCTCTGCTTCCAGAACGGCTTCGTAGCGATTTTTATCTGAAAACATTTGGACGCTTTAAAAATTGTTTTCTCGGTATTTTTGTCATTTTGAGGTGGTGGCCGAACTTTGCAAATTTGGTTTTCCAAGCCACCACTTCAAAATGACCTAAAAATGGCCTGAAATGCGCCTGGTGTGTTTTCTATGCCATTTTGAAGTGATGGCCTAACTTTTGCAAGTTCGATTTTCTAGTCCACCACTTCAAAGTGACAAATTGGCCGGACATGCAGTGATGGGAGGAAACGCATTTTCTCGAAATACGGAAATGGAATCGTTCATTTT</canonical>
            <polymorphic>ATCGATTTTCGGCGCGATTTTTCGTGAATAATTCAGAAGACGTTCGACGTCAACGTCGTCTCCCTCTTCTTCAGAATCCTCCACGTCATCAGAATCTTTCACATGAATCGCCTTCTGGTTCGATGTCAATTTCACTAGAATCTTCTCTCCAGACGCTGTCTCCACCGTCTTTTTCGCCTTTTTCAGTGATAGGTATTCCGAATTTTCTGGATCCAAAATGTTGGGCAACGTCTTCTGAATGATGTCTGAAGGCGTGGTGGCGATGAGGGAGTGGAGTTTGGCGGGGAATTTGAAATTGCGGCCGGATTTTCGATCCATGTAGAGGATGAAGACTTCGATTGCGGCTTGCAGCAGACGACGTGCCGTTGTTGCGCGTTTTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTAAGATGAGGAATCAGGATGAATGGTAAATTTTTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAATTTTTTWAAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGTTTCAGATTTTTTTTTCAAATTGTTTCAATGTCTTTCCAGATTTTCGAAATTCTTACCAAGATCCATTTGACACACTTCTTGTTTTTGAGGAATTTCTTCGTCAAATCAGACGCCAACGGATTGGCGAGCTCTGCTTCCAGAACGGCTTCGTAGCGATTTTTATCTGAAAACATTTGGACGCTTTAAAAATTGTTTTCTCGGTATTTTTGTCATTTTGAGGTGGTGGCCGAACTTTGCAAATTTGGTTTTCCAAGCCACCACTTCAAAATGACCTAAAAATGGCCTGAAATGCGCCTGGTGTGTTTTCTATGCCATTTTGAAGTGATGGCCTAACTTTTGCAAGTTCGATTTTCTAGTCCACCACTTCAAAGTGACAAATTGGCCGGACATGCAGTGATGGGAGGAAACGCATTTTCTCGAAATACGGAAATGGAATCGTTCATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>459 262 220 40 19</canonical_bands>
                <polymorphic_bands>459 262 220 59</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>425 263 209 33 32 19 11 8</canonical_bands>
                <polymorphic_bands>425 263 209 33 32 27 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGTTTTGAAGACGTTAGAC</pcr_primer_p1>
		<pcr_primer_p2>TCAAATGGATCTTGGTAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCGTTTTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTAAGATGAGGAATCAGGATGAATGGTAAATTTTTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAATTTTTTAAAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGTTTCAGATTTTTTTTTCAAATTGTTTCAATGTCTTTCCAGATTTTCGAAATTCTTACCAAGATCCATTTGA</canonical_amplicon>
		<polymorphic_amplicon>GCGTTTTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTAAGATGAGGAATCAGGATGAATGGTAAATTTTTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAATTTTTTWAAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGTTTCAGATTTTTTTTTCAAATTGTTTCAATGTCTTTCCAGATTTTCGAAATTCTTACCAAGATCCATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34990</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>120347</contig_pos>
        <strand></strand>
        <context>wtttttwaaa[T/A]ttttttttca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATTTTTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAATTTTTTAAAA</left_flank>
        <right_flank>TTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTCGGCGCGATTTTTCGTGAATAATTCAGAAGACGTTCGACGTCAACGTCGTCTCCCTCTTCTTCAGAATCCTCCACGTCATCAGAATCTTTCACATGAATCGCCTTCTGGTTCGATGTCAATTTCACTAGAATCTTCTCTCCAGACGCTGTCTCCACCGTCTTTTTCGCCTTTTTCAGTGATAGGTATTCCGAATTTTCTGGATCCAAAATGTTGGGCAACGTCTTCTGAATGATGTCTGAAGGCGTGGTGGCGATGAGGGAGTGGAGTTTGGCGGGGAATTTGAAATTGCGGCCGGATTTTCGATCCATGTAGAGGATGAAGACTTCGATTGCGGCTTGCAGCAGACGACGTGCCGTTGTTGCGCGTTTTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTAAGATGAGGAATCAGGATGAATGGTAAATTTTTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAATTTTTTAAAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGTTTCAGATTTTTTTTTCAAATTGTTTCAATGTCTTTCCAGATTTTCGAAATTCTTACCAAGATCCATTTGACACACTTCTTGTTTTTGAGGAATTTCTTCGTCAAATCAGACGCCAACGGATTGGCGAGCTCTGCTTCCAGAACGGCTTCGTAGCGATTTTTATCTGAAAACATTTGGACGCTTTAAAAATTGTTTTCTCGGTATTTTTGTCATTTTGAGGTGGTGGCCGAACTTTGCAAATTTGGTTTTCCAAGCCACCACTTCAAAATGACCTAAAAATGGCCTGAAATGCGCCTGGTGTGTTTTCTATGCCATTTTGAAGTGATGGCCTAACTTTTGCAAGTTCGATTTTCTAGTCCACCACTTCAAAGTGACAAATTGGCCGGACATGCAGTGATGGGAGGAAACGCATTTTCTCGAAATACGGAAATGGAATCGTTCATTTTTCCT</canonical>
            <polymorphic>ATTTTCGGCGCGATTTTTCGTGAATAATTCAGAAGACGTTCGACGTCAACGTCGTCTCCCTCTTCTTCAGAATCCTCCACGTCATCAGAATCTTTCACATGAATCGCCTTCTGGTTCGATGTCAATTTCACTAGAATCTTCTCTCCAGACGCTGTCTCCACCGTCTTTTTCGCCTTTTTCAGTGATAGGTATTCCGAATTTTCTGGATCCAAAATGTTGGGCAACGTCTTCTGAATGATGTCTGAAGGCGTGGTGGCGATGAGGGAGTGGAGTTTGGCGGGGAATTTGAAATTGCGGCCGGATTTTCGATCCATGTAGAGGATGAAGACTTCGATTGCGGCTTGCAGCAGACGACGTGCCGTTGTTGCGCGTTTTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTAAGATGAGGAATCAGGATGAATGGTAAATTTTTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAATTTTTTAAAAWTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGTTTCAGATTTTTTTTTCAAATTGTTTCAATGTCTTTCCAGATTTTCGAAATTCTTACCAAGATCCATTTGACACACTTCTTGTTTTTGAGGAATTTCTTCGTCAAATCAGACGCCAACGGATTGGCGAGCTCTGCTTCCAGAACGGCTTCGTAGCGATTTTTATCTGAAAACATTTGGACGCTTTAAAAATTGTTTTCTCGGTATTTTTGTCATTTTGAGGTGGTGGCCGAACTTTGCAAATTTGGTTTTCCAAGCCACCACTTCAAAATGACCTAAAAATGGCCTGAAATGCGCCTGGTGTGTTTTCTATGCCATTTTGAAGTGATGGCCTAACTTTTGCAAGTTCGATTTTCTAGTCCACCACTTCAAAGTGACAAATTGGCCGGACATGCAGTGATGGGAGGAAACGCATTTTCTCGAAATACGGAAATGGAATCGTTCATTTTTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>212 196 148 134 86 62 43 38 36 32 13</canonical_bands>
                <polymorphic_bands>212 196 148 134 86 74 62 43 32 13</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>138 127 98 97 86 74 73 51 43 32 32 30 25 16 13 12 11 10 10 10 7 5</canonical_bands>
                <polymorphic_bands>138 127 98 97 86 74 73 51 43 32 32 30 25 22 16 13 11 10 10 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGTTTTGAAGACGTTAGAC</pcr_primer_p1>
		<pcr_primer_p2>TCAAATGGATCTTGGTAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCGTTTTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTAAGATGAGGAATCAGGATGAATGGTAAATTTTTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAATTTTTTAAAATTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGTTTCAGATTTTTTTTTCAAATTGTTTCAATGTCTTTCCAGATTTTCGAAATTCTTACCAAGATCCATTTGA</canonical_amplicon>
		<polymorphic_amplicon>GCGTTTTGAAGACGTTAGACGGGATTCCTGGAAAAAAGAAGGGATGAAAATTTTAAGATGAGGAATCAGGATGAATGGTAAATTTTTAAAAAAAATTCAATTTTTTTCAATTTTTTTTTAATTTTTTAAAAWTTTTTTTTCAATTTAAAAAAGTTTTAATTTTTCAAAATTTTTTCAAAAGTTTCAGATTTTTTTTTCAAATTGTTTCAATGTCTTTCCAGATTTTCGAAATTCTTACCAAGATCCATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34991</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>121994</contig_pos>
        <strand></strand>
        <context>TTTCCAAAAA[G/C]TTAAAAAATA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TTTTCCAAAATTTTGCAAATTTCAAAAAAATGTATTTTTTTTTCCAAAAA</left_flank>
        <right_flank>TTAAAAAATAAAAGAATCTCACTTCTTCGCTCCTTTTCTTTCCTTTTTCA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAAAAAGTCAGAAAAAAAACATTTTCAGAATAATTTCTTATTTTTAAAAATTGAAAATTTTCTCAAAAAAAAAGTCTTACGGCATCATCATATCGTAGAAAATCTTATTGGGAATGAGCTNNNNNNNNNNATTTTGAAAATTGTTATTTTACGAAAATTTGAAAAATCGGAAAAAAATCTAAAAATTTCCGGAAATTTTTAAAAAATTGAAAATTTTGGAGAAATTTTAAAAAATCTCAAAGTTTACTAAAATTCAAAAAAACTTTGGAAAATTTCAAAATTTTGAATTTTTGGAGAATTTTCGAAAAATCGAATTTTTAGAAAATCGAAAATATTGCTGAAATTTTAATAAAAAATCACGAAAAAATGGAACAAATTTTTGAGGGAAAAGGTCAAAAACTTTTAAAAAATGGCGAAAAATTAGGAAAAAATTTTTTTTCGAGAAATTTTTCCAAAATTTTGCAAATTTCAAAAAAATGTATTTTTTTTTCCAAAAAGTTAAAAAATAAAAGAATCTCACTTCTTCGCTCCTTTTCTTTCCTTTTTCATCGTTACCGGCGTATCGTCTTTATCAATTTTGTGGCAAAAAATTTCCAGCGCCTTGAGAACTTGGTGCTCTTCAATTGGAGGTTTCGAGGTGGACATCTGGAAATGGGGAAACATAACTATGCAGAAATTCAAAAATTTTCAGGCGAAAATAAGTATTTGAAAATTAGGAAAAATTCAAAAAAAATTCAAAAAAAAAATTTTTTTTTGAATTTTTTTTTTCTAAAACTTCCAAAAAAAAAATTTTTCTCTAGAAAATCAAAATTTGAGCCCAAAAGCGCAATTTTTCACCTCTCCAATAGCCACATTCCATGCAAGCTCCGCCTCCAGCTCATCCTTCTCTCGAACTTCTCGAAACTTATCCAAAATAATTTTAAGCACTAGTTTCAGCAATTCTTCGCATCGTTCTTCGGAAATTTTCAGCCTAAAATTCAGCTGGTCGATTTTGACAT</canonical>
            <polymorphic>TCCAAAAAGTCAGAAAAAAAACATTTTCAGAATAATTTCTTATTTTTAAAAATTGAAAATTTTCTCAAAAAAAAAGTCTTACGGCATCATCATATCGTAGAAAATCTTATTGGGAATGAGCTNNNNNNNNNNATTTTGAAAATTGTTATTTTACGAAAATTTGAAAAATCGGAAAAAAATCTAAAAATTTCCGGAAATTTTTAAAAAATTGAAAATTTTGGAGAAATTTTAAAAAATCTCAAAGTTTACTAAAATTCAAAAAAACTTTGGAAAATTTCAAAATTTTGAATTTTTGGAGAATTTTCGAAAAATCGAATTTTTAGAAAATCGAAAATATTGCTGAAATTTTAATAAAAAATCACGAAAAAATGGAACAAATTTTTGAGGGAAAAGGTCAAAAACTTTTAAAAAATGGCGAAAAATTAGGAAAAAATTTTTTTTCGAGAAATTTTTCCAAAATTTTGCAAATTTCAAAAAAATGTATTTTTTTTTCCAAAAASTTAAAAAATAAAAGAATCTCACTTCTTCGCTCCTTTTCTTTCCTTTTTCATCGTTACCGGCGTATCGTCTTTATCAATTTTGTGGCAAAAAATTTCCAGCGCCTTGAGAACTTGGTGCTCTTCAATTGGAGGTTTCGAGGTGGACATCTGGAAATGGGGAAACATAACTATGCAGAAATTCAAAAATTTTCAGGCGAAAATAAGTATTTGAAAATTAGGAAAAATTCAAAAAAAATTCAAAAAAAAAATTTTTTTTTGAATTTTTTTTTTCTAAAACTTCCAAAAAAAAAATTTTTCTCTAGAAAATCAAAATTTGAGCCCAAAAGCGCAATTTTTCACCTCTCCAATAGCCACATTCCATGCAAGCTCCGCCTCCAGCTCATCCTTCTCTCGAACTTCTCGAAACTTATCCAAAATAATTTTAAGCACTAGTTTCAGCAATTCTTCGCATCGTTCTTCGGAAATTTTCAGCCTAAAATTCAGCTGGTCGATTTTGACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAAATTTTTGAGGGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>AAGAGCACCAAGTTCTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACAAATTTTTGAGGGAAAAGGTCAAAAACTTTTAAAAAATGGCGAAAAATTAGGAAAAAATTTTTTTTCGAGAAATTTTTCCAAAATTTTGCAAATTTCAAAAAAATGTATTTTTTTTTCCAAAAAGTTAAAAAATAAAAGAATCTCACTTCTTCGCTCCTTTTCTTTCCTTTTTCATCGTTACCGGCGTATCGTCTTTATCAATTTTGTGGCAAAAAATTTCCAGCGCCTTGAGAACTTGGTGCTCTT</canonical_amplicon>
		<polymorphic_amplicon>AACAAATTTTTGAGGGAAAAGGTCAAAAACTTTTAAAAAATGGCGAAAAATTAGGAAAAAATTTTTTTTCGAGAAATTTTTCCAAAATTTTGCAAATTTCAAAAAAATGTATTTTTTTTTCCAAAAASTTAAAAAATAAAAGAATCTCACTTCTTCGCTCCTTTTCTTTCCTTTTTCATCGTTACCGGCGTATCGTCTTTATCAATTTTGTGGCAAAAAATTTCCAGCGCCTTGAGAACTTGGTGCTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34992</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>145565</contig_pos>
        <strand>+</strand>
        <context>ATTTATTAGA[C/T]TTTTTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTCGATTTTCAAAAATTTCAATATTTCAGCTTCTTCTGATTTATTAGA</left_flank>
        <right_flank>TTTTTTTTTGATTTTCTAGATTTTTCCTAATTTCAACCAAACTTCCCGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGGGGGGGGGGGGGGGGNNNNNNNNNNGGGGGGGGGGGGGCTCCTATTAGAGGGAACACGATGTTACAAACTTCAAAATTAAACGTTTTCGATGGTTTCTATATTTGAAACAACAAAAATTATTTATTATTATTACGGATTGTTATTCAATGAGATTTGAATCTCAAATTATCTGATTTTTTACGAAAGTCTCTTTTCTGTGGATTTTTGTGTATAAATCTGGGAAATGTTTTTTTTTCAAAATTGTATCAAATTCCAATAGTTTCTATGAAAACTCTCTATTTTCAGGTTTTTTTTGAAAAAAAATCTTTTTCGGCATCCAAAAGTTTAAAAAATTCAAAACCTTTGATCTCTAGTTTTCGGATGTTCGAGGCTTGCAAAACCAACAAAAAAAACAATTCCGTCTGTCTGTATGTATCTGTTTGTCCAAAAAAAGAAATGAGTTTCCATTTCGATTTTCAAAAATTTCAATATTTCAGCTTCTTCTGATTTATTAGATTTTTTTTTTGATTTTCTAGATTTTTCCTAATTTCAACCAAACTTCCCGACTTTTCCCAACCAAAGATTTGAAAAGTTGACAATACTCGATTTCAAAAAATCAATCGACTTTTTGATTTTCTACCCTTCTCGTCTCAAATTTTCAAAATCCCAAAGGTTCCCAAATTTCCAGTCCTTCTCAAGCTTGTCCCAAATATCCCCAAAAAAGGAGATGAAGTCACCGGGAGCGGTGATATCACTCTATATTCGACGATTTTTCCGATGGACCGGCGTACAAGTGTATCAGTGAGTCATTTCTTCGTCTTTTTAATGCAAATTTTCACCTCGTTTTCACTTTTTTGTTGTTCCCGAAATGTCATTTTCAAGGTACATACACTAAAGTGCAAATAGGGTGTGAAAAGTTAAAAAAAATGGTTTAAAACATTTTCAAAACTCCGTGCACCTTTAAGGTTTCCAGATTTCTCGAAGTAGTGTTTTAAAGCCTGATTTTCTTATTTTTAT</canonical>
            <polymorphic>GGGGGGGGGGGGGGGGGGNNNNNNNNNNGGGGGGGGGGGGGCTCCTATTAGAGGGAACACGATGTTACAAACTTCAAAATTAAACGTTTTCGATGGTTTCTATATTTGAAACAACAAAAATTATTTATTATTATTACGGATTGTTATTCAATGAGATTTGAATCTCAAATTATCTGATTTTTTACGAAAGTCTCTTTTCTGTGGATTTTTGTGTATAAATCTGGGAAATGTTTTTTTTTCAAAATTGTATCAAATTCCAATAGTTTCTATGAAAACTCTCTATTTTCAGGTTTTTTTTGAAAAAAAATCTTTTTCGGCATCCAAAAGTTTAAAAAATTCAAAACCTTTGATCTCTAGTTTTCGGATGTTCGAGGCTTGCAAAACCAACAAAAAAAACAATTCCGTCTGTCTGTATGTATCTGTTTGTCCAAAAAAAGAAATGAGTTTCCATTTCGATTTTCAAAAATTTCAATATTTCAGCTTCTTCTGATTTATTAGAYTTTTTTTTTGATTTTCTAGATTTTTCCTAATTTCAACCAAACTTCCCGACTTTTCCCAACCAAAGATTTGAAAAGTTGACAATACTCGATTTCAAAAAATCAATCGACTTTTTGATTTTCTACCCTTCTCGTCTCAAATTTTCAAAATCCCAAAGGTTCCCAAATTTCCAGTCCTTCTCAAGCTTGTCCCAAATATCCCCAAAAAAGGAGATGAAGTCACCGGGAGCGGTGATATCACTCTATATTCGACGATTTTTCCGATGGACCGGCGTACAAGTGTATCAGTGAGTCATTTCTTCGTCTTTTTAATGCAAATTTTCACCTCGTTTTCACTTTTTTGTTGTTCCCGAAATGTCATTTTCAAGGTACATACACTAAAGTGCAAATAGGGTGTGAAAAGTTAAAAAAAATGGTTTAAAACATTTTCAAAACTCCGTGCACCTTTAAGGTTTCCAGATTTCTCGAAGTAGTGTTTTAAAGCCTGATTTTCTTATTTTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGATCTCTAGTTTTCGGATGT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAATCGAGTATTGTCAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGATCTCTAGTTTTCGGATGTTCGAGGCTTGCAAAACCAACAAAAAAAACAATTCCGTCTGTCTGTATGTATCTGTTTGTCCAAAAAAAGAAATGAGTTTCCATTTCGATTTTCAAAAATTTCAATATTTCAGCTTCTTCTGATTTATTAGATTTTTTTTTTGATTTTCTAGATTTTTCCTAATTTCAACCAAACTTCCCGACTTTTCCCAACCAAAGATTTGAAAAGTTGACAATACTCGATTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>TTGATCTCTAGTTTTCGGATGTTCGAGGCTTGCAAAACCAACAAAAAAAACAATTCCGTCTGTCTGTATGTATCTGTTTGTCCAAAAAAAGAAATGAGTTTCCATTTCGATTTTCAAAAATTTCAATATTTCAGCTTCTTCTGATTTATTAGAYTTTTTTTTTGATTTTCTAGATTTTTCCTAATTTCAACCAAACTTCCCGACTTTTCCCAACCAAAGATTTGAAAAGTTGACAATACTCGATTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34993</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>147638</contig_pos>
        <strand></strand>
        <context>aacacttgtt[T/C]ttgagatgtg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGTAGATCAAATATATACAGAAAAAATTAGGGTGTTTTGAAACACTTGTT</left_flank>
        <right_flank>TTGAGATGTGCTCACTGGAGCATAAAAGGTATGGTTTTGGAGTTTGGCTA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACTTCCATCAATCCTTCTGTCTTCCAATCACTACACTCATCATCCATTTTATCAATTGAATCATTATTAACGAATTGCATCAATACCTGCTTCTTCTTCCTATTCTCCTCTTTTTCCTAAATGTTTTAAGCAGATAAGCTGGTTTTTTTGTATGTATGGTCTGGCGAGGTGACTATTGGGATAAGAGAAATAGTCACGGATTGGAGACGAAGGACAAGGGATTTATCATTGTATTGTGTAATACATGACACAATGCCGTAAAAGCTAGACAATGGCAAAAGAAGCGAAAAAAAATCCCAGGGGTTTTTTGTGGTTTGAAATGATGAAAGACACAATCACTTTTTTTGCCTTCTGAATCTTCTCAGACGTGACGATGACTCCAGAAGAAAAAAACAATTTTCCGTTAGAATTTTTTAAAAGATTGGCTTTGTGATGAAACATATTTTGTGTAGATCAAATATATACAGAAAAAATTAGGGTGTTTTGAAACACTTGTTTTTGAGATGTGCTCACTGGAGCATAAAAGGTATGGTTTTGGAGTTTGGCTATAACTCGGCTCAAAATGAGTAATTTTAAATTTCATATAATGGTAAAAAAAACTGAAGACATCGAACGTTTTAATTTAGTTGAAATTCTAGAATTTTTCGGTTTAGCAAAAGTAAAAAAAAACCAAAAATGTATATTTTTTCAAAATTTGAAACATTTTAGCAGCGGAAGGAATATATTCGATTTTCAATTATCAGAATCTCAGAATAATCATAACCAAAGAAATTCAGAAGCTTAGAACCTTAGAATCAACATTCTCGATGCTTTAATCACCTAAACTTCAAAGAGAGAAATATGTCTTATATCGTTATTGAACGCAACGGTCTGGTGACAAGATTATTCGTATTGTTGATGTTGGAAGTGGTCCTAACACTTGCCCCGATTTTTATCTTCTGTTGTTTTGAGTATCGAGCATCGAAGAAGAAGAGTATGAAGACCACGACGACTACAGA</canonical>
            <polymorphic>CGACTTCCATCAATCCTTCTGTCTTCCAATCACTACACTCATCATCCATTTTATCAATTGAATCATTATTAACGAATTGCATCAATACCTGCTTCTTCTTCCTATTCTCCTCTTTTTCCTAAATGTTTTAAGCAGATAAGCTGGTTTTTTTGTATGTATGGTCTGGCGAGGTGACTATTGGGATAAGAGAAATAGTCACGGATTGGAGACGAAGGACAAGGGATTTATCATTGTATTGTGTAATACATGACACAATGCCGTAAAAGCTAGACAATGGCAAAAGAAGCGAAAAAAAATCCCAGGGGTTTTTTGTGGTTTGAAATGATGAAAGACACAATCACTTTTTTTGCCTTCTGAATCTTCTCAGACGTGACGATGACTCCAGAAGAAAAAAACAATTTTCCGTTAGAATTTTTTAAAAGATTGGCTTTGTGATGAAACATATTTTGTGTAGATCAAATATATACAGAAAAAATTAGGGTGTTTTGAAACACTTGTTYTTGAGATGTGCTCACTGGAGCATAAAAGGTATGGTTTTGGAGTTTGGCTATAACTCGGCTCAAAATGAGTAATTTTAAATTTCATATAATGGTAAAAAAAACTGAAGACATCGAACGTTTTAATTTAGTTGAAATTCTAGAATTTTTCGGTTTAGCAAAAGTAAAAAAAAACCAAAAATGTATATTTTTTCAAAATTTGAAACATTTTAGCAGCGGAAGGAATATATTCGATTTTCAATTATCAGAATCTCAGAATAATCATAACCAAAGAAATTCAGAAGCTTAGAACCTTAGAATCAACATTCTCGATGCTTTAATCACCTAAACTTCAAAGAGAGAAATATGTCTTATATCGTTATTGAACGCAACGGTCTGGTGACAAGATTATTCGTATTGTTGATGTTGGAAGTGGTCCTAACACTTGCCCCGATTTTTATCTTCTGTTGTTTTGAGTATCGAGCATCGAAGAAGAAGAGTATGAAGACCACGACGACTACAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTGGTTTGAAATGATGAA</pcr_primer_p1>
		<pcr_primer_p2>CGTTCGATGTCTTCAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>308</pcr_amplicon_size>
		<canonical_amplicon>TTGTGGTTTGAAATGATGAAAGACACAATCACTTTTTTTGCCTTCTGAATCTTCTCAGACGTGACGATGACTCCAGAAGAAAAAAACAATTTTCCGTTAGAATTTTTTAAAAGATTGGCTTTGTGATGAAACATATTTTGTGTAGATCAAATATATACAGAAAAAATTAGGGTGTTTTGAAACACTTGTTTTTGAGATGTGCTCACTGGAGCATAAAAGGTATGGTTTTGGAGTTTGGCTATAACTCGGCTCAAAATGAGTAATTTTAAATTTCATATAATGGTAAAAAAAACTGAAGACATCGAACG</canonical_amplicon>
		<polymorphic_amplicon>TTGTGGTTTGAAATGATGAAAGACACAATCACTTTTTTTGCCTTCTGAATCTTCTCAGACGTGACGATGACTCCAGAAGAAAAAAACAATTTTCCGTTAGAATTTTTTAAAAGATTGGCTTTGTGATGAAACATATTTTGTGTAGATCAAATATATACAGAAAAAATTAGGGTGTTTTGAAACACTTGTTYTTGAGATGTGCTCACTGGAGCATAAAAGGTATGGTTTTGGAGTTTGGCTATAACTCGGCTCAAAATGAGTAATTTTAAATTTCATATAATGGTAAAAAAAACTGAAGACATCGAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34994</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>149490</contig_pos>
        <strand>+</strand>
        <context>cagtattcca[G/T]aattccagaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGAATCTCAGAATCTCAGAATCCCAGAATCCCAGAATCCCAGTATTCCA</left_flank>
        <right_flank>AATTCCAGAATTCCAGAATTTCAGTATCCTAGAATCTAGGAAGGAGAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAACTTTGAAAGTTTCAAAAGTTCTTCGTGATCGAATGTTAAAGATTTTGAAATTTTGAGAAATTCTAAGATTTCGCTATTCTGAATTGTTTTTGGAAAACTTAAACTCCTGAAAATCAATATTCTCCTTTCTTTACAATTCTTCTGTATTCCCATGATCAATGTCACAAGAATTGACTCCATTTTCTCTTCTTATCTCAAAATTATTTTCTCTCTTTCTCTAACCCCTCCAATCACTCTTTGATCTATTACGGCATCCCCTCAGGACAGGTATCCCGAGCGGTTCGAAGAAAAAAAACTGGATAAAAAATCCCGAACATTTTTTTGCCGTCTGTCTTGCGCAATTTCATTTTGTATAAACGCAACCTGTTCAAAATTACAAAAGATTTTTTTTGCAAAAAAATCGGACCTAAGAGAGAATCTCAGAATCTCAGAATCTCAGAATCCAAGAATCTCAGAATCTCAGAATCCCAGAATCCCAGAATCCCAGTATTCCAGAATTCCAGAATTCCAGAATTTCAGTATCCTAGAATCTAGGAAGGAGAATCAGAAACTCAAAATCTCAGAATCTCAAAATCTCAAAATCTCAAAATTTCAAAACTTCAAAATTGTCTCGATGAAGAAAAATCTCGATAAAGAGTTTAAAACAACGTTGTAAAATTTTTTGAACATTCTAATCTTTAAAAAACCAGGTCTTACTGTACGAAACAAAAAAGTGTTACAGTAATCATTTGGAGGTAATTATGACGTCAATAAGTGTGTATAAATGACCAGAACTAATCTGCCCTGCCAAGCGGAAAGATGATGATGTGAAGGAGAGAAAACAAAACGATAATCTGAATAAAAAAGAGGAAAAATGAGGGATTTTTGAAATTCCAAATTTATCGAAAAATTATATTTTTCGGGAAAGACATCTTCAGAACTTGAAAATTCGAGAAGCTCATATTTAAAACTAACTATTAATTTTGAGCCAATTTATCTCGGTTCCTGTCAAAGAT</canonical>
            <polymorphic>TGGAACTTTGAAAGTTTCAAAAGTTCTTCGTGATCGAATGTTAAAGATTTTGAAATTTTGAGAAATTCTAAGATTTCGCTATTCTGAATTGTTTTTGGAAAACTTAAACTCCTGAAAATCAATATTCTCCTTTCTTTACAATTCTTCTGTATTCCCATGATCAATGTCACAAGAATTGACTCCATTTTCTCTTCTTATCTCAAAATTATTTTCTCTCTTTCTCTAACCCCTCCAATCACTCTTTGATCTATTACGGCATCCCCTCAGGACAGGTATCCCGAGCGGTTCGAAGAAAAAAAACTGGATAAAAAATCCCGAACATTTTTTTGCCGTCTGTCTTGCGCAATTTCATTTTGTATAAACGCAACCTGTTCAAAATTACAAAAGATTTTTTTTGCAAAAAAATCGGACCTAAGAGAGAATCTCAGAATCTCAGAATCTCAGAATCCAAGAATCTCAGAATCTCAGAATCCCAGAATCCCAGAATCCCAGTATTCCAKAATTCCAGAATTCCAGAATTTCAGTATCCTAGAATCTAGGAAGGAGAATCAGAAACTCAAAATCTCAGAATCTCAAAATCTCAAAATCTCAAAATTTCAAAACTTCAAAATTGTCTCGATGAAGAAAAATCTCGATAAAGAGTTTAAAACAACGTTGTAAAATTTTTTGAACATTCTAATCTTTAAAAAACCAGGTCTTACTGTACGAAACAAAAAAGTGTTACAGTAATCATTTGGAGGTAATTATGACGTCAATAAGTGTGTATAAATGACCAGAACTAATCTGCCCTGCCAAGCGGAAAGATGATGATGTGAAGGAGAGAAAACAAAACGATAATCTGAATAAAAAAGAGGAAAAATGAGGGATTTTTGAAATTCCAAATTTATCGAAAAATTATATTTTTCGGGAAAGACATCTTCAGAACTTGAAAATTCGAGAAGCTCATATTTAAAACTAACTATTAATTTTGAGCCAATTTATCTCGGTTCCTGTCAAAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>437 213 76 70 68 53 50 10 8 8 7</canonical_bands>
                <polymorphic_bands>445 213 76 70 68 53 50 10 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>500 492 8</canonical_bands>
                <polymorphic_bands>508 492</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>274 183 154 102 82 65 37 30 29 16 12 8 8</canonical_bands>
                <polymorphic_bands>274 191 154 102 82 65 37 30 29 16 12 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGTATAAACGCAACCTGT</pcr_primer_p1>
		<pcr_primer_p2>TTGAAATTTTGAGATTTTGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGTATAAACGCAACCTGTTCAAAATTACAAAAGATTTTTTTTGCAAAAAAATCGGACCTAAGAGAGAATCTCAGAATCTCAGAATCTCAGAATCCAAGAATCTCAGAATCTCAGAATCCCAGAATCCCAGAATCCCAGTATTCCAGAATTCCAGAATTCCAGAATTTCAGTATCCTAGAATCTAGGAAGGAGAATCAGAAACTCAAAATCTCAGAATCTCAAAATCTCAAAATCTCAAAATTTCAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGTATAAACGCAACCTGTTCAAAATTACAAAAGATTTTTTTTGCAAAAAAATCGGACCTAAGAGAGAATCTCAGAATCTCAGAATCTCAGAATCCAAGAATCTCAGAATCTCAGAATCCCAGAATCCCAGAATCCCAGTATTCCAKAATTCCAGAATTCCAGAATTTCAGTATCCTAGAATCTAGGAAGGAGAATCAGAAACTCAAAATCTCAGAATCTCAAAATCTCAAAATCTCAAAATTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34995</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>150409</contig_pos>
        <strand>+</strand>
        <context>AGGAAAAGTC[G/T]CTGGGAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAGGACCGGTCGAAAGTTTGTTCGAATGGCAGATTCGTTAGGAAAAGTC</left_flank>
        <right_flank>CTGGGAAAAAGCGAAAAAAATCGGATGAATTCGAAAAGATGATGATGGCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAACTTGAAAATTCGAGAAGCTCATATTTAAAACTAACTATTAATTTTGAGCCAATTTATCTCGGTTCCTGTCAAAGATATGCAGAAGTGGCAAACTAATAAAATGTTTAATATAATATCACAAACATTTTATCAGTTGACAGTTTTTTGATATCTCTTACAGGAATTGAAATAACTGAGCTCATACTTGACAATGTGGGGGACCTTGTACTACATGTTTTACCGTATTCCATTCCGGAATCTCAGAACTTCAAACACCCACAGTTTGAGAGGTTTAGAACTTTTATCTGAAAACCTAAGAATCCTAAAGTCATTACTACCACTTTTCATTTTCCCTTTCCTTTATTTTCTTTCTGCTTCTTCGTTCCATTGAACACCATTCGACGCTTTTCATTTTTAAAGAAGAAGAGGGAGAAAATCGAATGAAAAAAGAAGAAAAAAGTGAGTGAAGGACCGGTCGAAAGTTTGTTCGAATGGCAGATTCGTTAGGAAAAGTCGCTGGGAAAAAGCGAAAAAAATCGGATGAATTCGAAAAGATGATGATGGCAAGATATGGTTTTTGGTGTGTGTCACTTTGGTTTTTGTTTCGCCAAAATGGATTTGAAAAAGAATATAGTGGAGACATCTGGATACAGGGAAACTCGGAGATTCTAAAATTCCTAAATTCTTAAATGCCATAAACACTCTGATAAAAAGCCATCATATACTTGCACTTTGAGCTCGATTATCTCCATTTTCATAAGCGATAACAAAAATGTGTTAACTGATAGAACGTTGGTAATATTATGACAAAAATTATATCAGTTGTAGAAAATTCTGATATCTCACACGGAAATTGAGATAATTGAGCTCAAAGTGCACATACAAACCGTATTTCCTTTAATAGCAACGCACTAAACTTCGAGCTCAATTTTTTCGGTTCTATGAAAAATACCACAAATATTTTAACTGATTAATTAGGAACATCCACTTTGAGCCTATATATCTCACTGCTTTCG</canonical>
            <polymorphic>CAGAACTTGAAAATTCGAGAAGCTCATATTTAAAACTAACTATTAATTTTGAGCCAATTTATCTCGGTTCCTGTCAAAGATATGCAGAAGTGGCAAACTAATAAAATGTTTAATATAATATCACAAACATTTTATCAGTTGACAGTTTTTTGATATCTCTTACAGGAATTGAAATAACTGAGCTCATACTTGACAATGTGGGGGACCTTGTACTACATGTTTTACCGTATTCCATTCCGGAATCTCAGAACTTCAAACACCCACAGTTTGAGAGGTTTAGAACTTTTATCTGAAAACCTAAGAATCCTAAAGTCATTACTACCACTTTTCATTTTCCCTTTCCTTTATTTTCTTTCTGCTTCTTCGTTCCATTGAACACCATTCGACGCTTTTCATTTTTAAAGAAGAAGAGGGAGAAAATCGAATGAAAAAAGAAGAAAAAAGTGAGTGAAGGACCGGTCGAAAGTTTGTTCGAATGGCAGATTCGTTAGGAAAAGTCKCTGGGAAAAAGCGAAAAAAATCGGATGAATTCGAAAAGATGATGATGGCAAGATATGGTTTTTGGTGTGTGTCACTTTGGTTTTTGTTTCGCCAAAATGGATTTGAAAAAGAATATAGTGGAGACATCTGGATACAGGGAAACTCGGAGATTCTAAAATTCCTAAATTCTTAAATGCCATAAACACTCTGATAAAAAGCCATCATATACTTGCACTTTGAGCTCGATTATCTCCATTTTCATAAGCGATAACAAAAATGTGTTAACTGATAGAACGTTGGTAATATTATGACAAAAATTATATCAGTTGTAGAAAATTCTGATATCTCACACGGAAATTGAGATAATTGAGCTCAAAGTGCACATACAAACCGTATTTCCTTTAATAGCAACGCACTAAACTTCGAGCTCAATTTTTTCGGTTCTATGAAAAATACCACAAATATTTTAACTGATTAATTAGGAACATCCACTTTGAGCCTATATATCTCACTGCTTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTAAAGAAGAAGAGGGAGA</pcr_primer_p1>
		<pcr_primer_p2>AGTTTCCCTGTATCCAGATGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTAAAGAAGAAGAGGGAGAAAATCGAATGAAAAAAGAAGAAAAAAGTGAGTGAAGGACCGGTCGAAAGTTTGTTCGAATGGCAGATTCGTTAGGAAAAGTCGCTGGGAAAAAGCGAAAAAAATCGGATGAATTCGAAAAGATGATGATGGCAAGATATGGTTTTTGGTGTGTGTCACTTTGGTTTTTGTTTCGCCAAAATGGATTTGAAAAAGAATATAGTGGAGACATCTGGATACAGGGAAACT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTAAAGAAGAAGAGGGAGAAAATCGAATGAAAAAAGAAGAAAAAAGTGAGTGAAGGACCGGTCGAAAGTTTGTTCGAATGGCAGATTCGTTAGGAAAAGTCKCTGGGAAAAAGCGAAAAAAATCGGATGAATTCGAAAAGATGATGATGGCAAGATATGGTTTTTGGTGTGTGTCACTTTGGTTTTTGTTTCGCCAAAATGGATTTGAAAAAGAATATAGTGGAGACATCTGGATACAGGGAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34996</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>151082</contig_pos>
        <strand>+</strand>
        <context>AAAGGTGGGG[C/G]GACATGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCGGATGCCGTGCTATTAGAGTGTTTACGGTAATATCATTAAAGGTGGGG</left_flank>
        <right_flank>GACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCTCTCGA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCCATAAACACTCTGATAAAAAGCCATCATATACTTGCACTTTGAGCTCGATTATCTCCATTTTCATAAGCGATAACAAAAATGTGTTAACTGATAGAACGTTGGTAATATTATGACAAAAATTATATCAGTTGTAGAAAATTCTGATATCTCACACGGAAATTGAGATAATTGAGCTCAAAGTGCACATACAAACCGTATTTCCTTTAATAGCAACGCACTAAACTTCGAGCTCAATTTTTTCGGTTCTATGAAAAATACCACAAATATTTTAACTGATTAATTAGGAACATCCACTTTGAGCCTATATATCTCACTGCTTTCGAAAGAAATCAACAAGTTGTTAACTAATGAAATGCTTATCATAATATCAGCAACATTTTATTAGTTGATCACTTTTTGATATCTCTCACAGAAAATGAGATACATGGGCTCAAATTCGACGATTCGGATGCCGTGCTATTAGAGTGTTTACGGTAATATCATTAAAGGTGGGGCGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCTCTCGAGGAATTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAAAAAGCGGTCGCCCGATTGCATACATAAAGGCGAGGAAGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGTATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAATCTCACAGGAGCCGAGATAATTGAGCTAAAAATTGACTTTGACAAGTGAATGTGAAAAAAAGTGAAAGTGGAAAAATAAAAAAGTGGAAAAAAGTGAAGACATGAAACAATAATTTTCTCAAAACTCTGTTTGAGAAATTCTAACAAGAACCGAAACACTTATAATTAAAAAAAATTTCATTTCCAGGTAACAATAACCGCAAAAGACATGGACAATCTACTGCGACGGGATTATTT</canonical>
            <polymorphic>ATGCCATAAACACTCTGATAAAAAGCCATCATATACTTGCACTTTGAGCTCGATTATCTCCATTTTCATAAGCGATAACAAAAATGTGTTAACTGATAGAACGTTGGTAATATTATGACAAAAATTATATCAGTTGTAGAAAATTCTGATATCTCACACGGAAATTGAGATAATTGAGCTCAAAGTGCACATACAAACCGTATTTCCTTTAATAGCAACGCACTAAACTTCGAGCTCAATTTTTTCGGTTCTATGAAAAATACCACAAATATTTTAACTGATTAATTAGGAACATCCACTTTGAGCCTATATATCTCACTGCTTTCGAAAGAAATCAACAAGTTGTTAACTAATGAAATGCTTATCATAATATCAGCAACATTTTATTAGTTGATCACTTTTTGATATCTCTCACAGAAAATGAGATACATGGGCTCAAATTCGACGATTCGGATGCCGTGCTATTAGAGTGTTTACGGTAATATCATTAAAGGTGGGGSGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCTCTCGAGGAATTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAAAAAGCGGTCGCCCGATTGCATACATAAAGGCGAGGAAGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGTATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAATCTCACAGGAGCCGAGATAATTGAGCTAAAAATTGACTTTGACAAGTGAATGTGAAAAAAAGTGAAAGTGGAAAAATAAAAAAGTGGAAAAAAGTGAAGACATGAAACAATAATTTTCTCAAAACTCTGTTTGAGAAATTCTAACAAGAACCGAAACACTTATAATTAAAAAAAATTTCATTTCCAGGTAACAATAACCGCAAAAGACATGGACAATCTACTGCGACGGGATTATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAATACCACAAATATTTTAACTG</pcr_primer_p1>
		<pcr_primer_p2>CCTCACAAGTTCAATTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>314</pcr_amplicon_size>
		<canonical_amplicon>GAAAAATACCACAAATATTTTAACTGATTAATTAGGAACATCCACTTTGAGCCTATATATCTCACTGCTTTCGAAAGAAATCAACAAGTTGTTAACTAATGAAATGCTTATCATAATATCAGCAACATTTTATTAGTTGATCACTTTTTGATATCTCTCACAGAAAATGAGATACATGGGCTCAAATTCGACGATTCGGATGCCGTGCTATTAGAGTGTTTACGGTAATATCATTAAAGGTGGGGCGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCTCTCGAGGAATTGAACTTGTGAGG</canonical_amplicon>
		<polymorphic_amplicon>GAAAAATACCACAAATATTTTAACTGATTAATTAGGAACATCCACTTTGAGCCTATATATCTCACTGCTTTCGAAAGAAATCAACAAGTTGTTAACTAATGAAATGCTTATCATAATATCAGCAACATTTTATTAGTTGATCACTTTTTGATATCTCTCACAGAAAATGAGATACATGGGCTCAAATTCGACGATTCGGATGCCGTGCTATTAGAGTGTTTACGGTAATATCATTAAAGGTGGGGSGACATGAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCTCTCGAGGAATTGAACTTGTGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34997</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>154560</contig_pos>
        <strand>+</strand>
        <context>TTTTAAAATT[C/T]AGAAATTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGGAATTATATTTTTGCCTGCGTTGTTGCTAACGGTGAGTTTTAAAATT</left_flank>
        <right_flank>AGAAATTTCGGCGAAAAAAAAACCCGGAGTCATCGGCCGGGTTCTGAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTGACCAATTAGACTCAATTGGCGGCACAACAATGTCTACAGTAATCTGGGCCGCTATAACCATGGATTTGGCTTGCCTTCTGATGATTCCTGGAATCAATTCGATCCTAACAAGCACAATCGCAATGATGTCTATAAATGTGGGCGTTTTTGGATTACTGTCAGTTTGGAATGTCAATCTGGACCCGATTACAATGTGCACCACTTTGATGTCAATTGGATTTTCCGTGGATTTCACTGCTCATATATCCTATCACTACTACCGTAATCCGACGAGTTGGACTACCGACGAACGACTGGCAGACGCATTGAAATCGATTGGATGGCCGATGATCCAAGCGGCCACTTCTACCGTACTCTGCATAGTTCCTTTGATGTTTAATTCGAGTTATATGGTTTGGGTATTTGTCAAAACCATTTTGTTGGTTACGGTTCTCGGAATTCTACATGGAATTATATTTTTGCCTGCGTTGTTGCTAACGGTGAGTTTTAAAATTTAGAAATTTCGGCGAAAAAAAAACCCGGAGTCATCGGCCGGGTTCTGAAAATTCGAAAATTCAGAAAATTTCATGAAAAAGTTTGATTTTTTGCAGTCCGGTGACCTGTCTCGATTATTTGGAGGATCGAGTGATTCCAAAATACAACCTGAAAAAAAGGAAAAATTGGGAGAGATCTCCCAAGCTTCTAGCTTTTCCAGCACGAATAGTGAGACGGTACTTGTCAAAAAAGGTATTTAAAAAATTTTTTTTTGGAATATAGAAATTCAAAAATTCCGGAATTCGGAAGTTCAGAAAAATTGACATCCGGGAATCGAAAAAATCAGAAATTCAGAAATCTGAAATTCGGGAGTTTAGATCAATTTTCAAACTTGAAAAATTCCAACATTTTAATACTCCTAAATTCAAATGTTCTGGATTTCCAGAATAAAAATCTCGAAAATGTCAGAAATTCTGATTTTCAGGATTTCAGGAAATCTACAATTTAGGAGCTAAAACGCA</canonical>
            <polymorphic>CATTGACCAATTAGACTCAATTGGCGGCACAACAATGTCTACAGTAATCTGGGCCGCTATAACCATGGATTTGGCTTGCCTTCTGATGATTCCTGGAATCAATTCGATCCTAACAAGCACAATCGCAATGATGTCTATAAATGTGGGCGTTTTTGGATTACTGTCAGTTTGGAATGTCAATCTGGACCCGATTACAATGTGCACCACTTTGATGTCAATTGGATTTTCCGTGGATTTCACTGCTCATATATCCTATCACTACTACCGTAATCCGACGAGTTGGACTACCGACGAACGACTGGCAGACGCATTGAAATCGATTGGATGGCCGATGATCCAAGCGGCCACTTCTACCGTACTCTGCATAGTTCCTTTGATGTTTAATTCGAGTTATATGGTTTGGGTATTTGTCAAAACCATTTTGTTGGTTACGGTTCTCGGAATTCTACATGGAATTATATTTTTGCCTGCGTTGTTGCTAACGGTGAGTTTTAAAATTYAGAAATTTCGGCGAAAAAAAAACCCGGAGTCATCGGCCGGGTTCTGAAAATTCGAAAATTCAGAAAATTTCATGAAAAAGTTTGATTTTTTGCAGTCCGGTGACCTGTCTCGATTATTTGGAGGATCGAGTGATTCCAAAATACAACCTGAAAAAAAGGAAAAATTGGGAGAGATCTCCCAAGCTTCTAGCTTTTCCAGCACGAATAGTGAGACGGTACTTGTCAAAAAAGGTATTTAAAAAATTTTTTTTTGGAATATAGAAATTCAAAAATTCCGGAATTCGGAAGTTCAGAAAAATTGACATCCGGGAATCGAAAAAATCAGAAATTCAGAAATCTGAAATTCGGGAGTTTAGATCAATTTTCAAACTTGAAAAATTCCAACATTTTAATACTCCTAAATTCAAATGTTCTGGATTTCCAGAATAAAAATCTCGAAAATGTCAGAAATTCTGATTTTCAGGATTTCAGGAAATCTACAATTTAGGAGCTAAAACGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>441 176 54 52 48 48 45 35 24 21 15 9 8 8 8 8</canonical_bands>
                <polymorphic_bands>441 176 62 52 48 48 45 35 24 21 15 9 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATGTTTAATTCGAGTTATATGG</pcr_primer_p1>
		<pcr_primer_p2>CTCCAAATAATCGAGACAGGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGATGTTTAATTCGAGTTATATGGTTTGGGTATTTGTCAAAACCATTTTGTTGGTTACGGTTCTCGGAATTCTACATGGAATTATATTTTTGCCTGCGTTGTTGCTAACGGTGAGTTTTAAAATTTAGAAATTTCGGCGAAAAAAAAACCCGGAGTCATCGGCCGGGTTCTGAAAATTCGAAAATTCAGAAAATTTCATGAAAAAGTTTGATTTTTTGCAGTCCGGTGACCTGTCTCGATTATTTGGAG</canonical_amplicon>
		<polymorphic_amplicon>TGATGTTTAATTCGAGTTATATGGTTTGGGTATTTGTCAAAACCATTTTGTTGGTTACGGTTCTCGGAATTCTACATGGAATTATATTTTTGCCTGCGTTGTTGCTAACGGTGAGTTTTAAAATTYAGAAATTTCGGCGAAAAAAAAACCCGGAGTCATCGGCCGGGTTCTGAAAATTCGAAAATTCAGAAAATTTCATGAAAAAGTTTGATTTTTTGCAGTCCGGTGACCTGTCTCGATTATTTGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34998</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>154574</contig_pos>
        <strand>+</strand>
        <context>AATTTCGGCG[C/T]AAAAAAAACC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGCCTGCGTTGTTGCTAACGGTGAGTTTTAAAATTTAGAAATTTCGGCG</left_flank>
        <right_flank>AAAAAAAACCCGGAGTCATCGGCCGGGTTCTGAAAATTCGAAAATTCAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCAATTGGCGGCACAACAATGTCTACAGTAATCTGGGCCGCTATAACCATGGATTTGGCTTGCCTTCTGATGATTCCTGGAATCAATTCGATCCTAACAAGCACAATCGCAATGATGTCTATAAATGTGGGCGTTTTTGGATTACTGTCAGTTTGGAATGTCAATCTGGACCCGATTACAATGTGCACCACTTTGATGTCAATTGGATTTTCCGTGGATTTCACTGCTCATATATCCTATCACTACTACCGTAATCCGACGAGTTGGACTACCGACGAACGACTGGCAGACGCATTGAAATCGATTGGATGGCCGATGATCCAAGCGGCCACTTCTACCGTACTCTGCATAGTTCCTTTGATGTTTAATTCGAGTTATATGGTTTGGGTATTTGTCAAAACCATTTTGTTGGTTACGGTTCTCGGAATTCTACATGGAATTATATTTTTGCCTGCGTTGTTGCTAACGGTGAGTTTTAAAATTTAGAAATTTCGGCGAAAAAAAAACCCGGAGTCATCGGCCGGGTTCTGAAAATTCGAAAATTCAGAAAATTTCATGAAAAAGTTTGATTTTTTGCAGTCCGGTGACCTGTCTCGATTATTTGGAGGATCGAGTGATTCCAAAATACAACCTGAAAAAAAGGAAAAATTGGGAGAGATCTCCCAAGCTTCTAGCTTTTCCAGCACGAATAGTGAGACGGTACTTGTCAAAAAAGGTATTTAAAAAATTTTTTTTTGGAATATAGAAATTCAAAAATTCCGGAATTCGGAAGTTCAGAAAAATTGACATCCGGGAATCGAAAAAATCAGAAATTCAGAAATCTGAAATTCGGGAGTTTAGATCAATTTTCAAACTTGAAAAATTCCAACATTTTAATACTCCTAAATTCAAATGTTCTGGATTTCCAGAATAAAAATCTCGAAAATGTCAGAAATTCTGATTTTCAGGATTTCAGGAAATCTACAATTTAGGAGCTAAAACGCATACTTGCAAAATCA</canonical>
            <polymorphic>ACTCAATTGGCGGCACAACAATGTCTACAGTAATCTGGGCCGCTATAACCATGGATTTGGCTTGCCTTCTGATGATTCCTGGAATCAATTCGATCCTAACAAGCACAATCGCAATGATGTCTATAAATGTGGGCGTTTTTGGATTACTGTCAGTTTGGAATGTCAATCTGGACCCGATTACAATGTGCACCACTTTGATGTCAATTGGATTTTCCGTGGATTTCACTGCTCATATATCCTATCACTACTACCGTAATCCGACGAGTTGGACTACCGACGAACGACTGGCAGACGCATTGAAATCGATTGGATGGCCGATGATCCAAGCGGCCACTTCTACCGTACTCTGCATAGTTCCTTTGATGTTTAATTCGAGTTATATGGTTTGGGTATTTGTCAAAACCATTTTGTTGGTTACGGTTCTCGGAATTCTACATGGAATTATATTTTTGCCTGCGTTGTTGCTAACGGTGAGTTTTAAAATTTAGAAATTTCGGCGYAAAAAAAACCCGGAGTCATCGGCCGGGTTCTGAAAATTCGAAAATTCAGAAAATTTCATGAAAAAGTTTGATTTTTTGCAGTCCGGTGACCTGTCTCGATTATTTGGAGGATCGAGTGATTCCAAAATACAACCTGAAAAAAAGGAAAAATTGGGAGAGATCTCCCAAGCTTCTAGCTTTTCCAGCACGAATAGTGAGACGGTACTTGTCAAAAAAGGTATTTAAAAAATTTTTTTTTGGAATATAGAAATTCAAAAATTCCGGAATTCGGAAGTTCAGAAAAATTGACATCCGGGAATCGAAAAAATCAGAAATTCAGAAATCTGAAATTCGGGAGTTTAGATCAATTTTCAAACTTGAAAAATTCCAACATTTTAATACTCCTAAATTCAAATGTTCTGGATTTCCAGAATAAAAATCTCGAAAATGTCAGAAATTCTGATTTTCAGGATTTCAGGAAATCTACAATTTAGGAGCTAAAACGCATACTTGCAAAATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATGTTTAATTCGAGTTATATGG</pcr_primer_p1>
		<pcr_primer_p2>CTCCAAATAATCGAGACAGGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGATGTTTAATTCGAGTTATATGGTTTGGGTATTTGTCAAAACCATTTTGTTGGTTACGGTTCTCGGAATTCTACATGGAATTATATTTTTGCCTGCGTTGTTGCTAACGGTGAGTTTTAAAATTTAGAAATTTCGGCGAAAAAAAAACCCGGAGTCATCGGCCGGGTTCTGAAAATTCGAAAATTCAGAAAATTTCATGAAAAAGTTTGATTTTTTGCAGTCCGGTGACCTGTCTCGATTATTTGGAG</canonical_amplicon>
		<polymorphic_amplicon>TGATGTTTAATTCGAGTTATATGGTTTGGGTATTTGTCAAAACCATTTTGTTGGTTACGGTTCTCGGAATTCTACATGGAATTATATTTTTGCCTGCGTTGTTGCTAACGGTGAGTTTTAAAATTTAGAAATTTCGGCGYAAAAAAAACCCGGAGTCATCGGCCGGGTTCTGAAAATTCGAAAATTCAGAAAATTTCATGAAAAAGTTTGATTTTTTGCAGTCCGGTGACCTGTCTCGATTATTTGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb34999</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>154590</contig_pos>
        <strand></strand>
        <context>AAACCCGGAG[T/C]CATCGGCCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAACGGTGAGTTTTAAAATTTAGAAATTTCGGCGAAAAAAAAACCCGGAG</left_flank>
        <right_flank>CATCGGCCGGGTTCTGAAAATTCGAAAATTCAGAAAATTTCATGAAAAAG</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAATGTCTACAGTAATCTGGGCCGCTATAACCATGGATTTGGCTTGCCTTCTGATGATTCCTGGAATCAATTCGATCCTAACAAGCACAATCGCAATGATGTCTATAAATGTGGGCGTTTTTGGATTACTGTCAGTTTGGAATGTCAATCTGGACCCGATTACAATGTGCACCACTTTGATGTCAATTGGATTTTCCGTGGATTTCACTGCTCATATATCCTATCACTACTACCGTAATCCGACGAGTTGGACTACCGACGAACGACTGGCAGACGCATTGAAATCGATTGGATGGCCGATGATCCAAGCGGCCACTTCTACCGTACTCTGCATAGTTCCTTTGATGTTTAATTCGAGTTATATGGTTTGGGTATTTGTCAAAACCATTTTGTTGGTTACGGTTCTCGGAATTCTACATGGAATTATATTTTTGCCTGCGTTGTTGCTAACGGTGAGTTTTAAAATTTAGAAATTTCGGCGAAAAAAAAACCCGGAGTCATCGGCCGGGTTCTGAAAATTCGAAAATTCAGAAAATTTCATGAAAAAGTTTGATTTTTTGCAGTCCGGTGACCTGTCTCGATTATTTGGAGGATCGAGTGATTCCAAAATACAACCTGAAAAAAAGGAAAAATTGGGAGAGATCTCCCAAGCTTCTAGCTTTTCCAGCACGAATAGTGAGACGGTACTTGTCAAAAAAGGTATTTAAAAAATTTTTTTTTGGAATATAGAAATTCAAAAATTCCGGAATTCGGAAGTTCAGAAAAATTGACATCCGGGAATCGAAAAAATCAGAAATTCAGAAATCTGAAATTCGGGAGTTTAGATCAATTTTCAAACTTGAAAAATTCCAACATTTTAATACTCCTAAATTCAAATGTTCTGGATTTCCAGAATAAAAATCTCGAAAATGTCAGAAATTCTGATTTTCAGGATTTCAGGAAATCTACAATTTAGGAGCTAAAACGCATACTTGCAAAATCAGGGCCCGGTCCGGCTA</canonical>
            <polymorphic>AACAATGTCTACAGTAATCTGGGCCGCTATAACCATGGATTTGGCTTGCCTTCTGATGATTCCTGGAATCAATTCGATCCTAACAAGCACAATCGCAATGATGTCTATAAATGTGGGCGTTTTTGGATTACTGTCAGTTTGGAATGTCAATCTGGACCCGATTACAATGTGCACCACTTTGATGTCAATTGGATTTTCCGTGGATTTCACTGCTCATATATCCTATCACTACTACCGTAATCCGACGAGTTGGACTACCGACGAACGACTGGCAGACGCATTGAAATCGATTGGATGGCCGATGATCCAAGCGGCCACTTCTACCGTACTCTGCATAGTTCCTTTGATGTTTAATTCGAGTTATATGGTTTGGGTATTTGTCAAAACCATTTTGTTGGTTACGGTTCTCGGAATTCTACATGGAATTATATTTTTGCCTGCGTTGTTGCTAACGGTGAGTTTTAAAATTTAGAAATTTCGGCGAAAAAAAAACCCGGAGYCATCGGCCGGGTTCTGAAAATTCGAAAATTCAGAAAATTTCATGAAAAAGTTTGATTTTTTGCAGTCCGGTGACCTGTCTCGATTATTTGGAGGATCGAGTGATTCCAAAATACAACCTGAAAAAAAGGAAAAATTGGGAGAGATCTCCCAAGCTTCTAGCTTTTCCAGCACGAATAGTGAGACGGTACTTGTCAAAAAAGGTATTTAAAAAATTTTTTTTTGGAATATAGAAATTCAAAAATTCCGGAATTCGGAAGTTCAGAAAAATTGACATCCGGGAATCGAAAAAATCAGAAATTCAGAAATCTGAAATTCGGGAGTTTAGATCAATTTTCAAACTTGAAAAATTCCAACATTTTAATACTCCTAAATTCAAATGTTCTGGATTTCCAGAATAAAAATCTCGAAAATGTCAGAAATTCTGATTTTCAGGATTTCAGGAAATCTACAATTTAGGAGCTAAAACGCATACTTGCAAAATCAGGGCCCGGTCCGGCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>431 220 178 105 58 8</canonical_bands>
                <polymorphic_bands>536 220 178 58 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATGTTTAATTCGAGTTATATGG</pcr_primer_p1>
		<pcr_primer_p2>CTCCAAATAATCGAGACAGGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGATGTTTAATTCGAGTTATATGGTTTGGGTATTTGTCAAAACCATTTTGTTGGTTACGGTTCTCGGAATTCTACATGGAATTATATTTTTGCCTGCGTTGTTGCTAACGGTGAGTTTTAAAATTTAGAAATTTCGGCGAAAAAAAAACCCGGAGTCATCGGCCGGGTTCTGAAAATTCGAAAATTCAGAAAATTTCATGAAAAAGTTTGATTTTTTGCAGTCCGGTGACCTGTCTCGATTATTTGGAG</canonical_amplicon>
		<polymorphic_amplicon>TGATGTTTAATTCGAGTTATATGGTTTGGGTATTTGTCAAAACCATTTTGTTGGTTACGGTTCTCGGAATTCTACATGGAATTATATTTTTGCCTGCGTTGTTGCTAACGGTGAGTTTTAAAATTTAGAAATTTCGGCGAAAAAAAAACCCGGAGYCATCGGCCGGGTTCTGAAAATTCGAAAATTCAGAAAATTTCATGAAAAAGTTTGATTTTTTGCAGTCCGGTGACCTGTCTCGATTATTTGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35000</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>154631</contig_pos>
        <strand></strand>
        <context>CAGAAAATTT[C/T]ATGAAAAAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACCCGGAGTCATCGGCCGGGTTCTGAAAATTCGAAAATTCAGAAAATTT</left_flank>
        <right_flank>ATGAAAAAGTTTGATTTTTTGCAGTCCGGTGACCTGTCTCGATTATTTGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGCTTGCCTTCTGATGATTCCTGGAATCAATTCGATCCTAACAAGCACAATCGCAATGATGTCTATAAATGTGGGCGTTTTTGGATTACTGTCAGTTTGGAATGTCAATCTGGACCCGATTACAATGTGCACCACTTTGATGTCAATTGGATTTTCCGTGGATTTCACTGCTCATATATCCTATCACTACTACCGTAATCCGACGAGTTGGACTACCGACGAACGACTGGCAGACGCATTGAAATCGATTGGATGGCCGATGATCCAAGCGGCCACTTCTACCGTACTCTGCATAGTTCCTTTGATGTTTAATTCGAGTTATATGGTTTGGGTATTTGTCAAAACCATTTTGTTGGTTACGGTTCTCGGAATTCTACATGGAATTATATTTTTGCCTGCGTTGTTGCTAACGGTGAGTTTTAAAATTTAGAAATTTCGGCGAAAAAAAAACCCGGAGTCATCGGCCGGGTTCTGAAAATTCGAAAATTCAGAAAATTTCATGAAAAAGTTTGATTTTTTGCAGTCCGGTGACCTGTCTCGATTATTTGGAGGATCGAGTGATTCCAAAATACAACCTGAAAAAAAGGAAAAATTGGGAGAGATCTCCCAAGCTTCTAGCTTTTCCAGCACGAATAGTGAGACGGTACTTGTCAAAAAAGGTATTTAAAAAATTTTTTTTTGGAATATAGAAATTCAAAAATTCCGGAATTCGGAAGTTCAGAAAAATTGACATCCGGGAATCGAAAAAATCAGAAATTCAGAAATCTGAAATTCGGGAGTTTAGATCAATTTTCAAACTTGAAAAATTCCAACATTTTAATACTCCTAAATTCAAATGTTCTGGATTTCCAGAATAAAAATCTCGAAAATGTCAGAAATTCTGATTTTCAGGATTTCAGGAAATCTACAATTTAGGAGCTAAAACGCATACTTGCAAAATCAGGGCCCGGTCCGGCTAGGCGGGCCCGGATTCTCCAAATTTGAAAAAATTGAAATTTC</canonical>
            <polymorphic>TGGCTTGCCTTCTGATGATTCCTGGAATCAATTCGATCCTAACAAGCACAATCGCAATGATGTCTATAAATGTGGGCGTTTTTGGATTACTGTCAGTTTGGAATGTCAATCTGGACCCGATTACAATGTGCACCACTTTGATGTCAATTGGATTTTCCGTGGATTTCACTGCTCATATATCCTATCACTACTACCGTAATCCGACGAGTTGGACTACCGACGAACGACTGGCAGACGCATTGAAATCGATTGGATGGCCGATGATCCAAGCGGCCACTTCTACCGTACTCTGCATAGTTCCTTTGATGTTTAATTCGAGTTATATGGTTTGGGTATTTGTCAAAACCATTTTGTTGGTTACGGTTCTCGGAATTCTACATGGAATTATATTTTTGCCTGCGTTGTTGCTAACGGTGAGTTTTAAAATTTAGAAATTTCGGCGAAAAAAAAACCCGGAGTCATCGGCCGGGTTCTGAAAATTCGAAAATTCAGAAAATTTYATGAAAAAGTTTGATTTTTTGCAGTCCGGTGACCTGTCTCGATTATTTGGAGGATCGAGTGATTCCAAAATACAACCTGAAAAAAAGGAAAAATTGGGAGAGATCTCCCAAGCTTCTAGCTTTTCCAGCACGAATAGTGAGACGGTACTTGTCAAAAAAGGTATTTAAAAAATTTTTTTTTGGAATATAGAAATTCAAAAATTCCGGAATTCGGAAGTTCAGAAAAATTGACATCCGGGAATCGAAAAAATCAGAAATTCAGAAATCTGAAATTCGGGAGTTTAGATCAATTTTCAAACTTGAAAAATTCCAACATTTTAATACTCCTAAATTCAAATGTTCTGGATTTCCAGAATAAAAATCTCGAAAATGTCAGAAATTCTGATTTTCAGGATTTCAGGAAATCTACAATTTAGGAGCTAAAACGCATACTTGCAAAATCAGGGCCCGGTCCGGCTAGGCGGGCCCGGATTCTCCAAATTTGAAAAAATTGAAATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 378 122</canonical_bands>
                <polymorphic_bands>622 378</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>389 166 111 102 71 67 38 27 13 8 8</canonical_bands>
                <polymorphic_bands>427 166 111 102 71 67 27 13 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATGTTTAATTCGAGTTATATGG</pcr_primer_p1>
		<pcr_primer_p2>CTCCAAATAATCGAGACAGGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGATGTTTAATTCGAGTTATATGGTTTGGGTATTTGTCAAAACCATTTTGTTGGTTACGGTTCTCGGAATTCTACATGGAATTATATTTTTGCCTGCGTTGTTGCTAACGGTGAGTTTTAAAATTTAGAAATTTCGGCGAAAAAAAAACCCGGAGTCATCGGCCGGGTTCTGAAAATTCGAAAATTCAGAAAATTTCATGAAAAAGTTTGATTTTTTGCAGTCCGGTGACCTGTCTCGATTATTTGGAG</canonical_amplicon>
		<polymorphic_amplicon>TGATGTTTAATTCGAGTTATATGGTTTGGGTATTTGTCAAAACCATTTTGTTGGTTACGGTTCTCGGAATTCTACATGGAATTATATTTTTGCCTGCGTTGTTGCTAACGGTGAGTTTTAAAATTTAGAAATTTCGGCGAAAAAAAAACCCGGAGTCATCGGCCGGGTTCTGAAAATTCGAAAATTCAGAAAATTTYATGAAAAAGTTTGATTTTTTGCAGTCCGGTGACCTGTCTCGATTATTTGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35001</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>235165</contig_pos>
        <strand>+</strand>
        <context>GTAGCGGCGC[A/C]GCAYCCTCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCGGGCGGCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGC</left_flank>
        <right_flank>GCATCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGACAAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCTTGGGACCGATGGTCCGATGATGGGACCGGCGGTCCCGTTTTGGGACCATTCTTCCCGGAAAGAGCCGAGTTTTTTCCTGAAAAATGTGAAAATATGCATTTAATATAGTTTTATTATCCCAAACTTTGACCTCAGTGGGTTACAAATTGAATCAAGAATAAATATGTAATATAAATTTGATTGATTGAACTAGACAAATATTATTTTCCGCAATTTCCCAGTCTAGTGTTTTTCTTCACAATTTATACATTTTATGTTGACCTGGAAAAATTGAGATCTCTGTAATTACAGCTATTTTTTTCAAAAGGCTATTTCCTTAAAGGTGGGGGGACAGGAGATTTTTCGGGGATTTTTTTTTGAGCTAGGGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCAGCATCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGACAAATTTGAACGGAATTTCGAGAACATTAACTTTTTCATGTCCCCCCACCTTTAAAATTCCCAATAAACCTTTCTTACGGTCTTGTGATTTTACGGTTCTGTGATTTTCAATGTGACATACCAGAGACGTTTTGTGAACATTGAGAATGCTCAACAAAACATTTCTCTGACCTCATTATTCAAATTTCAAACATGATAACACAAAAAATAGTGATTCATAAAAACGTATTTTCAAGATAACTGTTTTTTAAAAAATTGTTTTCTTTTAATCTAAAAGAGATCTGAAACTTAATAAACAAAAATATTGAAATTGAAAAACAATTTTCGACAAAAAGCATAATTTTTTGTACAAATAATTAAATGATTTCTGATTTTTTTTTCATCTGCTTTCTCATAAAAATTGTCTTCTGATCTGGAAATCGAAAATCAGATTTTTTTCGATTTTCAGTCTGAAAAG</canonical>
            <polymorphic>ATTCTTGGGACCGATGGTCCGATGATGGGACCGGCGGTCCCGTTTTGGGACCATTCTTCCCGGAAAGAGCCGAGTTTTTTCCTGAAAAATGTGAAAATATGCATTTAATATAGTTTTATTATCCCAAACTTTGACCTCAGTGGGTTACAAATTGAATCAAGAATAAATATGTAATATAAATTTGATTGATTGAACTAGACAAATATTATTTTCCGCAATTTCCCAGTCTAGTGTTTTTCTTCACAATTTATACATTTTATGTTGACCTGGAAAAATTGAGATCTCTGTAATTACAGCTATTTTTTTCAAAAGGCTATTTCCTTAAAGGTGGGGGGACAGGAGATTTTTCGGGGATTTTTTTTTGAGCTAGGGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCMGCATCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGACAAATTTGAACGGAATTTCGAGAACATTAACTTTTTCATGTCCCCCCACCTTTAAAATTCCCAATAAACCTTTCTTACGGTCTTGTGATTTTACGGTTCTGTGATTTTCAATGTGACATACCAGAGACGTTTTGTGAACATTGAGAATGCTCAACAAAACATTTCTCTGACCTCATTATTCAAATTTCAAACATGATAACACAAAAAATAGTGATTCATAAAAACGTATTTTCAAGATAACTGTTTTTTAAAAAATTGTTTTCTTTTAATCTAAAAGAGATCTGAAACTTAATAAACAAAAATATTGAAATTGAAAAACAATTTTCGACAAAAAGCATAATTTTTTGTACAAATAATTAAATGATTTCTGATTTTTTTTTCATCTGCTTTCTCATAAAAATTGTCTTCTGATCTGGAAATCGAAAATCAGATTTTTTTCGATTTTCAGTCTGAAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTACAACGCTTAATGTCACTC</pcr_primer_p1>
		<pcr_primer_p2>GTAAAATCACAAGACCGTAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCAGCATCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGACAAATTTGAACGGAATTTCGAGAACATTAACTTTTTCATGTCCCCCCACCTTTAAAATTCCCAATAAACCTTTCTTACGGTCTTGTGATTTTAC</canonical_amplicon>
		<polymorphic_amplicon>TGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCMGCATCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGACAAATTTGAACGGAATTTCGAGAACATTAACTTTTTCATGTCCCCCCACCTTTAAAATTCCCAATAAACCTTTCTTACGGTCTTGTGATTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35002</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>235169</contig_pos>
        <strand>+</strand>
        <context>CGGCGCMGCA[C/T]CCTCAATCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCGGCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCAGCA</left_flank>
        <right_flank>CCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGACAAATTTGAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGGACCGATGGTCCGATGATGGGACCGGCGGTCCCGTTTTGGGACCATTCTTCCCGGAAAGAGCCGAGTTTTTTCCTGAAAAATGTGAAAATATGCATTTAATATAGTTTTATTATCCCAAACTTTGACCTCAGTGGGTTACAAATTGAATCAAGAATAAATATGTAATATAAATTTGATTGATTGAACTAGACAAATATTATTTTCCGCAATTTCCCAGTCTAGTGTTTTTCTTCACAATTTATACATTTTATGTTGACCTGGAAAAATTGAGATCTCTGTAATTACAGCTATTTTTTTCAAAAGGCTATTTCCTTAAAGGTGGGGGGACAGGAGATTTTTCGGGGATTTTTTTTTGAGCTAGGGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCAGCATCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGACAAATTTGAACGGAATTTCGAGAACATTAACTTTTTCATGTCCCCCCACCTTTAAAATTCCCAATAAACCTTTCTTACGGTCTTGTGATTTTACGGTTCTGTGATTTTCAATGTGACATACCAGAGACGTTTTGTGAACATTGAGAATGCTCAACAAAACATTTCTCTGACCTCATTATTCAAATTTCAAACATGATAACACAAAAAATAGTGATTCATAAAAACGTATTTTCAAGATAACTGTTTTTTAAAAAATTGTTTTCTTTTAATCTAAAAGAGATCTGAAACTTAATAAACAAAAATATTGAAATTGAAAAACAATTTTCGACAAAAAGCATAATTTTTTGTACAAATAATTAAATGATTTCTGATTTTTTTTTCATCTGCTTTCTCATAAAAATTGTCTTCTGATCTGGAAATCGAAAATCAGATTTTTTTCGATTTTCAGTCTGAAAAGTGTC</canonical>
            <polymorphic>TTGGGACCGATGGTCCGATGATGGGACCGGCGGTCCCGTTTTGGGACCATTCTTCCCGGAAAGAGCCGAGTTTTTTCCTGAAAAATGTGAAAATATGCATTTAATATAGTTTTATTATCCCAAACTTTGACCTCAGTGGGTTACAAATTGAATCAAGAATAAATATGTAATATAAATTTGATTGATTGAACTAGACAAATATTATTTTCCGCAATTTCCCAGTCTAGTGTTTTTCTTCACAATTTATACATTTTATGTTGACCTGGAAAAATTGAGATCTCTGTAATTACAGCTATTTTTTTCAAAAGGCTATTTCCTTAAAGGTGGGGGGACAGGAGATTTTTCGGGGATTTTTTTTTGAGCTAGGGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCAGCAYCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGACAAATTTGAACGGAATTTCGAGAACATTAACTTTTTCATGTCCCCCCACCTTTAAAATTCCCAATAAACCTTTCTTACGGTCTTGTGATTTTACGGTTCTGTGATTTTCAATGTGACATACCAGAGACGTTTTGTGAACATTGAGAATGCTCAACAAAACATTTCTCTGACCTCATTATTCAAATTTCAAACATGATAACACAAAAAATAGTGATTCATAAAAACGTATTTTCAAGATAACTGTTTTTTAAAAAATTGTTTTCTTTTAATCTAAAAGAGATCTGAAACTTAATAAACAAAAATATTGAAATTGAAAAACAATTTTCGACAAAAAGCATAATTTTTTGTACAAATAATTAAATGATTTCTGATTTTTTTTTCATCTGCTTTCTCATAAAAATTGTCTTCTGATCTGGAAATCGAAAATCAGATTTTTTTCGATTTTCAGTCTGAAAAGTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTACAACGCTTAATGTCACTC</pcr_primer_p1>
		<pcr_primer_p2>GTAAAATCACAAGACCGTAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCAGCATCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGACAAATTTGAACGGAATTTCGAGAACATTAACTTTTTCATGTCCCCCCACCTTTAAAATTCCCAATAAACCTTTCTTACGGTCTTGTGATTTTAC</canonical_amplicon>
		<polymorphic_amplicon>TGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCAGCAYCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGACAAATTTGAACGGAATTTCGAGAACATTAACTTTTTCATGTCCCCCCACCTTTAAAATTCCCAATAAACCTTTCTTACGGTCTTGTGATTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35003</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>235205</contig_pos>
        <strand>+</strand>
        <context>AACTCCTCGA[A/G]GGRCAWATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAGCGGCGCAGCATCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGA</left_flank>
        <right_flank>GGACAAATTTGAACGGAATTTCGAGAACATTAACTTTTTCATGTCCCCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTTTGGGACCATTCTTCCCGGAAAGAGCCGAGTTTTTTCCTGAAAAATGTGAAAATATGCATTTAATATAGTTTTATTATCCCAAACTTTGACCTCAGTGGGTTACAAATTGAATCAAGAATAAATATGTAATATAAATTTGATTGATTGAACTAGACAAATATTATTTTCCGCAATTTCCCAGTCTAGTGTTTTTCTTCACAATTTATACATTTTATGTTGACCTGGAAAAATTGAGATCTCTGTAATTACAGCTATTTTTTTCAAAAGGCTATTTCCTTAAAGGTGGGGGGACAGGAGATTTTTCGGGGATTTTTTTTTGAGCTAGGGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCAGCATCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGACAAATTTGAACGGAATTTCGAGAACATTAACTTTTTCATGTCCCCCCACCTTTAAAATTCCCAATAAACCTTTCTTACGGTCTTGTGATTTTACGGTTCTGTGATTTTCAATGTGACATACCAGAGACGTTTTGTGAACATTGAGAATGCTCAACAAAACATTTCTCTGACCTCATTATTCAAATTTCAAACATGATAACACAAAAAATAGTGATTCATAAAAACGTATTTTCAAGATAACTGTTTTTTAAAAAATTGTTTTCTTTTAATCTAAAAGAGATCTGAAACTTAATAAACAAAAATATTGAAATTGAAAAACAATTTTCGACAAAAAGCATAATTTTTTGTACAAATAATTAAATGATTTCTGATTTTTTTTTCATCTGCTTTCTCATAAAAATTGTCTTCTGATCTGGAAATCGAAAATCAGATTTTTTTCGATTTTCAGTCTGAAAAGTGTCTGAAAAATTTCGTCGTCTCCTTTTTAGGTGTTATAA</canonical>
            <polymorphic>CGTTTTGGGACCATTCTTCCCGGAAAGAGCCGAGTTTTTTCCTGAAAAATGTGAAAATATGCATTTAATATAGTTTTATTATCCCAAACTTTGACCTCAGTGGGTTACAAATTGAATCAAGAATAAATATGTAATATAAATTTGATTGATTGAACTAGACAAATATTATTTTCCGCAATTTCCCAGTCTAGTGTTTTTCTTCACAATTTATACATTTTATGTTGACCTGGAAAAATTGAGATCTCTGTAATTACAGCTATTTTTTTCAAAAGGCTATTTCCTTAAAGGTGGGGGGACAGGAGATTTTTCGGGGATTTTTTTTTGAGCTAGGGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCAGCATCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGARGGACAAATTTGAACGGAATTTCGAGAACATTAACTTTTTCATGTCCCCCCACCTTTAAAATTCCCAATAAACCTTTCTTACGGTCTTGTGATTTTACGGTTCTGTGATTTTCAATGTGACATACCAGAGACGTTTTGTGAACATTGAGAATGCTCAACAAAACATTTCTCTGACCTCATTATTCAAATTTCAAACATGATAACACAAAAAATAGTGATTCATAAAAACGTATTTTCAAGATAACTGTTTTTTAAAAAATTGTTTTCTTTTAATCTAAAAGAGATCTGAAACTTAATAAACAAAAATATTGAAATTGAAAAACAATTTTCGACAAAAAGCATAATTTTTTGTACAAATAATTAAATGATTTCTGATTTTTTTTTCATCTGCTTTCTCATAAAAATTGTCTTCTGATCTGGAAATCGAAAATCAGATTTTTTTCGATTTTCAGTCTGAAAAGTGTCTGAAAAATTTCGTCGTCTCCTTTTTAGGTGTTATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTCGAG</site>
                <isoschizomers>
                    <enzyme>BssHI</enzyme>
                    <enzyme>PaeR7I</enzyme>
                    <enzyme>SciI</enzyme>
                    <enzyme>Sfr274I</enzyme>
                    <enzyme>SlaI</enzyme>
                    <enzyme>TliI</enzyme>
                    <enzyme>XhoI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTACAACGCTTAATGTCACTC</pcr_primer_p1>
		<pcr_primer_p2>GTAAAATCACAAGACCGTAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCAGCATCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGACAAATTTGAACGGAATTTCGAGAACATTAACTTTTTCATGTCCCCCCACCTTTAAAATTCCCAATAAACCTTTCTTACGGTCTTGTGATTTTAC</canonical_amplicon>
		<polymorphic_amplicon>TGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCAGCATCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGARGGACAAATTTGAACGGAATTTCGAGAACATTAACTTTTTCATGTCCCCCCACCTTTAAAATTCCCAATAAACCTTTCTTACGGTCTTGTGATTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35004</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>235208</contig_pos>
        <strand>+</strand>
        <context>TCCTCGARGG[A/G]CAWATTTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCGGCGCAGCATCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGG</left_flank>
        <right_flank>CAAATTTGAACGGAATTTCGAGAACATTAACTTTTTCATGTCCCCCCACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGGACCATTCTTCCCGGAAAGAGCCGAGTTTTTTCCTGAAAAATGTGAAAATATGCATTTAATATAGTTTTATTATCCCAAACTTTGACCTCAGTGGGTTACAAATTGAATCAAGAATAAATATGTAATATAAATTTGATTGATTGAACTAGACAAATATTATTTTCCGCAATTTCCCAGTCTAGTGTTTTTCTTCACAATTTATACATTTTATGTTGACCTGGAAAAATTGAGATCTCTGTAATTACAGCTATTTTTTTCAAAAGGCTATTTCCTTAAAGGTGGGGGGACAGGAGATTTTTCGGGGATTTTTTTTTGAGCTAGGGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCAGCATCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGACAAATTTGAACGGAATTTCGAGAACATTAACTTTTTCATGTCCCCCCACCTTTAAAATTCCCAATAAACCTTTCTTACGGTCTTGTGATTTTACGGTTCTGTGATTTTCAATGTGACATACCAGAGACGTTTTGTGAACATTGAGAATGCTCAACAAAACATTTCTCTGACCTCATTATTCAAATTTCAAACATGATAACACAAAAAATAGTGATTCATAAAAACGTATTTTCAAGATAACTGTTTTTTAAAAAATTGTTTTCTTTTAATCTAAAAGAGATCTGAAACTTAATAAACAAAAATATTGAAATTGAAAAACAATTTTCGACAAAAAGCATAATTTTTTGTACAAATAATTAAATGATTTCTGATTTTTTTTTCATCTGCTTTCTCATAAAAATTGTCTTCTGATCTGGAAATCGAAAATCAGATTTTTTTCGATTTTCAGTCTGAAAAGTGTCTGAAAAATTTCGTCGTCTCCTTTTTAGGTGTTATAATAT</canonical>
            <polymorphic>TTTGGGACCATTCTTCCCGGAAAGAGCCGAGTTTTTTCCTGAAAAATGTGAAAATATGCATTTAATATAGTTTTATTATCCCAAACTTTGACCTCAGTGGGTTACAAATTGAATCAAGAATAAATATGTAATATAAATTTGATTGATTGAACTAGACAAATATTATTTTCCGCAATTTCCCAGTCTAGTGTTTTTCTTCACAATTTATACATTTTATGTTGACCTGGAAAAATTGAGATCTCTGTAATTACAGCTATTTTTTTCAAAAGGCTATTTCCTTAAAGGTGGGGGGACAGGAGATTTTTCGGGGATTTTTTTTTGAGCTAGGGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCAGCATCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGRCAAATTTGAACGGAATTTCGAGAACATTAACTTTTTCATGTCCCCCCACCTTTAAAATTCCCAATAAACCTTTCTTACGGTCTTGTGATTTTACGGTTCTGTGATTTTCAATGTGACATACCAGAGACGTTTTGTGAACATTGAGAATGCTCAACAAAACATTTCTCTGACCTCATTATTCAAATTTCAAACATGATAACACAAAAAATAGTGATTCATAAAAACGTATTTTCAAGATAACTGTTTTTTAAAAAATTGTTTTCTTTTAATCTAAAAGAGATCTGAAACTTAATAAACAAAAATATTGAAATTGAAAAACAATTTTCGACAAAAAGCATAATTTTTTGTACAAATAATTAAATGATTTCTGATTTTTTTTTCATCTGCTTTCTCATAAAAATTGTCTTCTGATCTGGAAATCGAAAATCAGATTTTTTTCGATTTTCAGTCTGAAAAGTGTCTGAAAAATTTCGTCGTCTCCTTTTTAGGTGTTATAATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTACAACGCTTAATGTCACTC</pcr_primer_p1>
		<pcr_primer_p2>GTAAAATCACAAGACCGTAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCAGCATCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGACAAATTTGAACGGAATTTCGAGAACATTAACTTTTTCATGTCCCCCCACCTTTAAAATTCCCAATAAACCTTTCTTACGGTCTTGTGATTTTAC</canonical_amplicon>
		<polymorphic_amplicon>TGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCAGCATCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGRCAAATTTGAACGGAATTTCGAGAACATTAACTTTTTCATGTCCCCCCACCTTTAAAATTCCCAATAAACCTTTCTTACGGTCTTGTGATTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35005</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>235211</contig_pos>
        <strand>+</strand>
        <context>TCGARGGRCA[A/T]ATTTGAACGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCGCAGCATCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGACA</left_flank>
        <right_flank>ATTTGAACGGAATTTCGAGAACATTAACTTTTTCATGTCCCCCCACCTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGACCATTCTTCCCGGAAAGAGCCGAGTTTTTTCCTGAAAAATGTGAAAATATGCATTTAATATAGTTTTATTATCCCAAACTTTGACCTCAGTGGGTTACAAATTGAATCAAGAATAAATATGTAATATAAATTTGATTGATTGAACTAGACAAATATTATTTTCCGCAATTTCCCAGTCTAGTGTTTTTCTTCACAATTTATACATTTTATGTTGACCTGGAAAAATTGAGATCTCTGTAATTACAGCTATTTTTTTCAAAAGGCTATTTCCTTAAAGGTGGGGGGACAGGAGATTTTTCGGGGATTTTTTTTTGAGCTAGGGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCAGCATCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGACAAATTTGAACGGAATTTCGAGAACATTAACTTTTTCATGTCCCCCCACCTTTAAAATTCCCAATAAACCTTTCTTACGGTCTTGTGATTTTACGGTTCTGTGATTTTCAATGTGACATACCAGAGACGTTTTGTGAACATTGAGAATGCTCAACAAAACATTTCTCTGACCTCATTATTCAAATTTCAAACATGATAACACAAAAAATAGTGATTCATAAAAACGTATTTTCAAGATAACTGTTTTTTAAAAAATTGTTTTCTTTTAATCTAAAAGAGATCTGAAACTTAATAAACAAAAATATTGAAATTGAAAAACAATTTTCGACAAAAAGCATAATTTTTTGTACAAATAATTAAATGATTTCTGATTTTTTTTTCATCTGCTTTCTCATAAAAATTGTCTTCTGATCTGGAAATCGAAAATCAGATTTTTTTCGATTTTCAGTCTGAAAAGTGTCTGAAAAATTTCGTCGTCTCCTTTTTAGGTGTTATAATATTCT</canonical>
            <polymorphic>GGGACCATTCTTCCCGGAAAGAGCCGAGTTTTTTCCTGAAAAATGTGAAAATATGCATTTAATATAGTTTTATTATCCCAAACTTTGACCTCAGTGGGTTACAAATTGAATCAAGAATAAATATGTAATATAAATTTGATTGATTGAACTAGACAAATATTATTTTCCGCAATTTCCCAGTCTAGTGTTTTTCTTCACAATTTATACATTTTATGTTGACCTGGAAAAATTGAGATCTCTGTAATTACAGCTATTTTTTTCAAAAGGCTATTTCCTTAAAGGTGGGGGGACAGGAGATTTTTCGGGGATTTTTTTTTGAGCTAGGGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCAGCATCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGACAWATTTGAACGGAATTTCGAGAACATTAACTTTTTCATGTCCCCCCACCTTTAAAATTCCCAATAAACCTTTCTTACGGTCTTGTGATTTTACGGTTCTGTGATTTTCAATGTGACATACCAGAGACGTTTTGTGAACATTGAGAATGCTCAACAAAACATTTCTCTGACCTCATTATTCAAATTTCAAACATGATAACACAAAAAATAGTGATTCATAAAAACGTATTTTCAAGATAACTGTTTTTTAAAAAATTGTTTTCTTTTAATCTAAAAGAGATCTGAAACTTAATAAACAAAAATATTGAAATTGAAAAACAATTTTCGACAAAAAGCATAATTTTTTGTACAAATAATTAAATGATTTCTGATTTTTTTTTCATCTGCTTTCTCATAAAAATTGTCTTCTGATCTGGAAATCGAAAATCAGATTTTTTTCGATTTTCAGTCTGAAAAGTGTCTGAAAAATTTCGTCGTCTCCTTTTTAGGTGTTATAATATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>367 284 132 127 42 37 11</canonical_bands>
                <polymorphic_bands>378 284 132 127 42 37</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>257 127 103 71 68 55 44 42 38 37 29 29 28 19 16 15 11 11</canonical_bands>
                <polymorphic_bands>268 127 103 71 68 55 44 42 38 37 29 29 28 19 16 15 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTACAACGCTTAATGTCACTC</pcr_primer_p1>
		<pcr_primer_p2>GTAAAATCACAAGACCGTAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCAGCATCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGACAAATTTGAACGGAATTTCGAGAACATTAACTTTTTCATGTCCCCCCACCTTTAAAATTCCCAATAAACCTTTCTTACGGTCTTGTGATTTTAC</canonical_amplicon>
		<polymorphic_amplicon>TGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCAGCATCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGACAWATTTGAACGGAATTTCGAGAACATTAACTTTTTCATGTCCCCCCACCTTTAAAATTCCCAATAAACCTTTCTTACGGTCTTGTGATTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35006</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>235329</contig_pos>
        <strand>+</strand>
        <context>ATGTGACATA[C/T]CAGAGACGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCTTACGGTCTTGTGATTTTACGGTTCTGTGATTTTCAATGTGACATA</left_flank>
        <right_flank>CAGAGACGTTTTGTGAACATTGAGAATGCTCAACAAAACATTTCTCTGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATATGTAATATAAATTTGATTGATTGAACTAGACAAATATTATTTTCCGCAATTTCCCAGTCTAGTGTTTTTCTTCACAATTTATACATTTTATGTTGACCTGGAAAAATTGAGATCTCTGTAATTACAGCTATTTTTTTCAAAAGGCTATTTCCTTAAAGGTGGGGGGACAGGAGATTTTTCGGGGATTTTTTTTTGAGCTAGGGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCAGCATCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGACAAATTTGAACGGAATTTCGAGAACATTAACTTTTTCATGTCCCCCCACCTTTAAAATTCCCAATAAACCTTTCTTACGGTCTTGTGATTTTACGGTTCTGTGATTTTCAATGTGACATACCAGAGACGTTTTGTGAACATTGAGAATGCTCAACAAAACATTTCTCTGACCTCATTATTCAAATTTCAAACATGATAACACAAAAAATAGTGATTCATAAAAACGTATTTTCAAGATAACTGTTTTTTAAAAAATTGTTTTCTTTTAATCTAAAAGAGATCTGAAACTTAATAAACAAAAATATTGAAATTGAAAAACAATTTTCGACAAAAAGCATAATTTTTTGTACAAATAATTAAATGATTTCTGATTTTTTTTTCATCTGCTTTCTCATAAAAATTGTCTTCTGATCTGGAAATCGAAAATCAGATTTTTTTCGATTTTCAGTCTGAAAAGTGTCTGAAAAATTTCGTCGTCTCCTTTTTAGGTGTTATAATATTCTCAATCATCTCAGCTTGTCATTTCAGGCATTTTTAACTTTCCAATTTTTTTTCTTCTATTTTTCTAATAAATTCAAATTTCCAGAATATGCCTCCAACTTGCCCCAATGACTTCCAAAA</canonical>
            <polymorphic>AAATATGTAATATAAATTTGATTGATTGAACTAGACAAATATTATTTTCCGCAATTTCCCAGTCTAGTGTTTTTCTTCACAATTTATACATTTTATGTTGACCTGGAAAAATTGAGATCTCTGTAATTACAGCTATTTTTTTCAAAAGGCTATTTCCTTAAAGGTGGGGGGACAGGAGATTTTTCGGGGATTTTTTTTTGAGCTAGGGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCAGCATCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGACAAATTTGAACGGAATTTCGAGAACATTAACTTTTTCATGTCCCCCCACCTTTAAAATTCCCAATAAACCTTTCTTACGGTCTTGTGATTTTACGGTTCTGTGATTTTCAATGTGACATAYCAGAGACGTTTTGTGAACATTGAGAATGCTCAACAAAACATTTCTCTGACCTCATTATTCAAATTTCAAACATGATAACACAAAAAATAGTGATTCATAAAAACGTATTTTCAAGATAACTGTTTTTTAAAAAATTGTTTTCTTTTAATCTAAAAGAGATCTGAAACTTAATAAACAAAAATATTGAAATTGAAAAACAATTTTCGACAAAAAGCATAATTTTTTGTACAAATAATTAAATGATTTCTGATTTTTTTTTCATCTGCTTTCTCATAAAAATTGTCTTCTGATCTGGAAATCGAAAATCAGATTTTTTTCGATTTTCAGTCTGAAAAGTGTCTGAAAAATTTCGTCGTCTCCTTTTTAGGTGTTATAATATTCTCAATCATCTCAGCTTGTCATTTCAGGCATTTTTAACTTTCCAATTTTTTTTCTTCTATTTTTCTAATAAATTCAAATTTCCAGAATATGCCTCCAACTTGCCCCAATGACTTCCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTAAAATTCCCAATAAACCTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTTTATTAAGTTTCAGATCTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTAAAATTCCCAATAAACCTTTCTTACGGTCTTGTGATTTTACGGTTCTGTGATTTTCAATGTGACATACCAGAGACGTTTTGTGAACATTGAGAATGCTCAACAAAACATTTCTCTGACCTCATTATTCAAATTTCAAACATGATAACACAAAAAATAGTGATTCATAAAAACGTATTTTCAAGATAACTGTTTTTTAAAAAATTGTTTTCTTTTAATCTAAAAGAGATCTGAAACTTAATAAACAA</canonical_amplicon>
		<polymorphic_amplicon>CTTTAAAATTCCCAATAAACCTTTCTTACGGTCTTGTGATTTTACGGTTCTGTGATTTTCAATGTGACATAYCAGAGACGTTTTGTGAACATTGAGAATGCTCAACAAAACATTTCTCTGACCTCATTATTCAAATTTCAAACATGATAACACAAAAAATAGTGATTCATAAAAACGTATTTTCAAGATAACTGTTTTTTAAAAAATTGTTTTCTTTTAATCTAAAAGAGATCTGAAACTTAATAAACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35007</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>235451</contig_pos>
        <strand>+</strand>
        <context>CAAGATAACT[A/G]TTTTTTAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGATAACACAAAAAATAGTGATTCATAAAAACGTATTTTCAAGATAACT</left_flank>
        <right_flank>TTTTTTAAAAAATTGTTTTCTTTTAATCTAAAAGAGATCTGAAACTTAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAATTACAGCTATTTTTTTCAAAAGGCTATTTCCTTAAAGGTGGGGGGACAGGAGATTTTTCGGGGATTTTTTTTTGAGCTAGGGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCAGCATCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGACAAATTTGAACGGAATTTCGAGAACATTAACTTTTTCATGTCCCCCCACCTTTAAAATTCCCAATAAACCTTTCTTACGGTCTTGTGATTTTACGGTTCTGTGATTTTCAATGTGACATACCAGAGACGTTTTGTGAACATTGAGAATGCTCAACAAAACATTTCTCTGACCTCATTATTCAAATTTCAAACATGATAACACAAAAAATAGTGATTCATAAAAACGTATTTTCAAGATAACTGTTTTTTAAAAAATTGTTTTCTTTTAATCTAAAAGAGATCTGAAACTTAATAAACAAAAATATTGAAATTGAAAAACAATTTTCGACAAAAAGCATAATTTTTTGTACAAATAATTAAATGATTTCTGATTTTTTTTTCATCTGCTTTCTCATAAAAATTGTCTTCTGATCTGGAAATCGAAAATCAGATTTTTTTCGATTTTCAGTCTGAAAAGTGTCTGAAAAATTTCGTCGTCTCCTTTTTAGGTGTTATAATATTCTCAATCATCTCAGCTTGTCATTTCAGGCATTTTTAACTTTCCAATTTTTTTTCTTCTATTTTTCTAATAAATTCAAATTTCCAGAATATGCCTCCAACTTGCCCCAATGACTTCCAAAATCAATTGGATTCTCCAGAAACTGTCCGTCTGTTCTCCTATCTAAAAGACACAATTGTCCTTCCATTACACCTATTTGGAGCATACTGTATTTTGAAAAAGACCCCAAATAATATGCATTCTG</canonical>
            <polymorphic>GTAATTACAGCTATTTTTTTCAAAAGGCTATTTCCTTAAAGGTGGGGGGACAGGAGATTTTTCGGGGATTTTTTTTTGAGCTAGGGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGGCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCAGCATCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGACAAATTTGAACGGAATTTCGAGAACATTAACTTTTTCATGTCCCCCCACCTTTAAAATTCCCAATAAACCTTTCTTACGGTCTTGTGATTTTACGGTTCTGTGATTTTCAATGTGACATACCAGAGACGTTTTGTGAACATTGAGAATGCTCAACAAAACATTTCTCTGACCTCATTATTCAAATTTCAAACATGATAACACAAAAAATAGTGATTCATAAAAACGTATTTTCAAGATAACTRTTTTTTAAAAAATTGTTTTCTTTTAATCTAAAAGAGATCTGAAACTTAATAAACAAAAATATTGAAATTGAAAAACAATTTTCGACAAAAAGCATAATTTTTTGTACAAATAATTAAATGATTTCTGATTTTTTTTTCATCTGCTTTCTCATAAAAATTGTCTTCTGATCTGGAAATCGAAAATCAGATTTTTTTCGATTTTCAGTCTGAAAAGTGTCTGAAAAATTTCGTCGTCTCCTTTTTAGGTGTTATAATATTCTCAATCATCTCAGCTTGTCATTTCAGGCATTTTTAACTTTCCAATTTTTTTTCTTCTATTTTTCTAATAAATTCAAATTTCCAGAATATGCCTCCAACTTGCCCCAATGACTTCCAAAATCAATTGGATTCTCCAGAAACTGTCCGTCTGTTCTCCTATCTAAAAGACACAATTGTCCTTCCATTACACCTATTTGGAGCATACTGTATTTTGAAAAAGACCCCAAATAATATGCATTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>401 231 147 99 64 36 16 6</canonical_bands>
                <polymorphic_bands>548 231 99 64 36 16 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACATTTCTCTGACCTCATTA</pcr_primer_p1>
		<pcr_primer_p2>AATTTTTATGAGAAAGCAGATGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAACATTTCTCTGACCTCATTATTCAAATTTCAAACATGATAACACAAAAAATAGTGATTCATAAAAACGTATTTTCAAGATAACTGTTTTTTAAAAAATTGTTTTCTTTTAATCTAAAAGAGATCTGAAACTTAATAAACAAAAATATTGAAATTGAAAAACAATTTTCGACAAAAAGCATAATTTTTTGTACAAATAATTAAATGATTTCTGATTTTTTTTTCATCTGCTTTCTCATAAAAATT</canonical_amplicon>
		<polymorphic_amplicon>AAAACATTTCTCTGACCTCATTATTCAAATTTCAAACATGATAACACAAAAAATAGTGATTCATAAAAACGTATTTTCAAGATAACTRTTTTTTAAAAAATTGTTTTCTTTTAATCTAAAAGAGATCTGAAACTTAATAAACAAAAATATTGAAATTGAAAAACAATTTTCGACAAAAAGCATAATTTTTTGTACAAATAATTAAATGATTTCTGATTTTTTTTTCATCTGCTTTCTCATAAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35010</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>238831</contig_pos>
        <strand></strand>
        <context>TTATTGTGTG[C/T]AATGCTGGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCAGTGGACCATTCTCTTCCTGTTCATCACTGGTATCATTATTGTGTG</left_flank>
        <right_flank>AATGCTGGATTCCCATTCATCACAAAATCAGAAGCAGCGGATTACACGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAAATAAAGGTACCACTATAATTGCTGCTTTGCATAGTTCCGAATTAGAAGATTAAACTTGGCAGTCGACTCAAAACAAGTAGAAAAAACCAAAGATCAATTCCAGCGCGACAATGCGAGATCGCCTATGACTAGAGGGATAAGCCAAAAATTCATGTCGCTTGGCTGAACTATTCTTTTACACCCGCCGTATTTTCCAGATTTTGCTTTTTCTGATGTATGGTTGTTTGAGGCTCTTAAACGTTATATTGATAGAAAAGACTTCAAGTGAAAAGATGACACCAAAAAGTAGTGGGCTCACTTTTTCAACCGCAGCTCTCGTCGTTCAGGGCCGATGGAATTGAGAAATTACCGGAGCGTTGTCAGACAATTACTGATGCCCGGATAATACTTCTGACCAGGTAAAAATTCACAAATTTTTTCTCGCATTTTCACCTTTATCAATATTTTTCAGTGGACCATTCTCTTCCTGTTCATCACTGGTATCATTATTGTGTGCAATGCTGGATTCCCATTCATCACAAAATCAGAAGCAGCGGATTACACGAAACCGAAGGATCGTACAATTGAAAAATATTAATTTTTTGAAAATTTGAAAATTTTTGTTTTTTGTGAAAACTCTGAAAAATCGTTCATTTCTTGTGTATACATGTTTTGGTTTTGTTTCCGAAAATTGTTTTTTTTTGAATAAAGAAAAAAAATTGTCTCAAAAATCCAAATTTTTCAATTGAATGCTCATTAATATTTATTAAGAATAAAAAATGGACTTTTTTTCAAACAAGCTTCTTAAAGCCACCATCCAGGGAGGTTATTGTAAATCTTGTTGCATCCGGTACGCTTGAATTCCTGAGTCTTGGTTGGTGTGGTCTTCATACAGCATCTGAATCCATTTCCGGTCATGCACGATCCCTCGTAAACAGTGGCACAGTTATGCACGCAGAGGTTGTAACAAGTCTTGTTTTGATGGGTTTCGTAGCTGTTCCATGGAGCGCAGTTGTC</canonical>
            <polymorphic>TTAAATAAAGGTACCACTATAATTGCTGCTTTGCATAGTTCCGAATTAGAAGATTAAACTTGGCAGTCGACTCAAAACAAGTAGAAAAAACCAAAGATCAATTCCAGCGCGACAATGCGAGATCGCCTATGACTAGAGGGATAAGCCAAAAATTCATGTCGCTTGGCTGAACTATTCTTTTACACCCGCCGTATTTTCCAGATTTTGCTTTTTCTGATGTATGGTTGTTTGAGGCTCTTAAACGTTATATTGATAGAAAAGACTTCAAGTGAAAAGATGACACCAAAAAGTAGTGGGCTCACTTTTTCAACCGCAGCTCTCGTCGTTCAGGGCCGATGGAATTGAGAAATTACCGGAGCGTTGTCAGACAATTACTGATGCCCGGATAATACTTCTGACCAGGTAAAAATTCACAAATTTTTTCTCGCATTTTCACCTTTATCAATATTTTTCAGTGGACCATTCTCTTCCTGTTCATCACTGGTATCATTATTGTGTGYAATGCTGGATTCCCATTCATCACAAAATCAGAAGCAGCGGATTACACGAAACCGAAGGATCGTACAATTGAAAAATATTAATTTTTTGAAAATTTGAAAATTTTTGTTTTTTGTGAAAACTCTGAAAAATCGTTCATTTCTTGTGTATACATGTTTTGGTTTTGTTTCCGAAAATTGTTTTTTTTTGAATAAAGAAAAAAAATTGTCTCAAAAATCCAAATTTTTCAATTGAATGCTCATTAATATTTATTAAGAATAAAAAATGGACTTTTTTTCAAACAAGCTTCTTAAAGCCACCATCCAGGGAGGTTATTGTAAATCTTGTTGCATCCGGTACGCTTGAATTCCTGAGTCTTGGTTGGTGTGGTCTTCATACAGCATCTGAATCCATTTCCGGTCATGCACGATCCCTCGTAAACAGTGGCACAGTTATGCACGCAGAGGTTGTAACAAGTCTTGTTTTGATGGGTTTCGTAGCTGTTCCATGGAGCGCAGTTGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>466 328 75 66 33 32</canonical_bands>
                <polymorphic_bands>794 75 66 33 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACCAGGTAAAAATTCACAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATACACAAGAAATGAACGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GACCAGGTAAAAATTCACAAATTTTTTCTCGCATTTTCACCTTTATCAATATTTTTCAGTGGACCATTCTCTTCCTGTTCATCACTGGTATCATTATTGTGTGCAATGCTGGATTCCCATTCATCACAAAATCAGAAGCAGCGGATTACACGAAACCGAAGGATCGTACAATTGAAAAATATTAATTTTTTGAAAATTTGAAAATTTTTGTTTTTTGTGAAAACTCTGAAAAATCGTTCATTTCTTGTGTAT</canonical_amplicon>
		<polymorphic_amplicon>GACCAGGTAAAAATTCACAAATTTTTTCTCGCATTTTCACCTTTATCAATATTTTTCAGTGGACCATTCTCTTCCTGTTCATCACTGGTATCATTATTGTGTGYAATGCTGGATTCCCATTCATCACAAAATCAGAAGCAGCGGATTACACGAAACCGAAGGATCGTACAATTGAAAAATATTAATTTTTTGAAAATTTGAAAATTTTTGTTTTTTGTGAAAACTCTGAAAAATCGTTCATTTCTTGTGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35011</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>238879</contig_pos>
        <strand></strand>
        <context>CGGATTACAC[G/A]AAACCGAAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGCAATGCTGGATTCCCATTCATCACAAAATCAGAAGCAGCGGATTACAC</left_flank>
        <right_flank>AAACCGAAGGATCGTACAATTGAAAAATATTAATTTTTTGAAAATTTGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGATTAAACTTGGCAGTCGACTCAAAACAAGTAGAAAAAACCAAAGATCAATTCCAGCGCGACAATGCGAGATCGCCTATGACTAGAGGGATAAGCCAAAAATTCATGTCGCTTGGCTGAACTATTCTTTTACACCCGCCGTATTTTCCAGATTTTGCTTTTTCTGATGTATGGTTGTTTGAGGCTCTTAAACGTTATATTGATAGAAAAGACTTCAAGTGAAAAGATGACACCAAAAAGTAGTGGGCTCACTTTTTCAACCGCAGCTCTCGTCGTTCAGGGCCGATGGAATTGAGAAATTACCGGAGCGTTGTCAGACAATTACTGATGCCCGGATAATACTTCTGACCAGGTAAAAATTCACAAATTTTTTCTCGCATTTTCACCTTTATCAATATTTTTCAGTGGACCATTCTCTTCCTGTTCATCACTGGTATCATTATTGTGTGCAATGCTGGATTCCCATTCATCACAAAATCAGAAGCAGCGGATTACACGAAACCGAAGGATCGTACAATTGAAAAATATTAATTTTTTGAAAATTTGAAAATTTTTGTTTTTTGTGAAAACTCTGAAAAATCGTTCATTTCTTGTGTATACATGTTTTGGTTTTGTTTCCGAAAATTGTTTTTTTTTGAATAAAGAAAAAAAATTGTCTCAAAAATCCAAATTTTTCAATTGAATGCTCATTAATATTTATTAAGAATAAAAAATGGACTTTTTTTCAAACAAGCTTCTTAAAGCCACCATCCAGGGAGGTTATTGTAAATCTTGTTGCATCCGGTACGCTTGAATTCCTGAGTCTTGGTTGGTGTGGTCTTCATACAGCATCTGAATCCATTTCCGGTCATGCACGATCCCTCGTAAACAGTGGCACAGTTATGCACGCAGAGGTTGTAACAAGTCTTGTTTTGATGGGTTTCGTAGCTGTTCCATGGAGCGCAGTTGTCATAAGAAATCGATCCTTGAATTGATGCACAGTATTGCATACAGATGGC</canonical>
            <polymorphic>GAAGATTAAACTTGGCAGTCGACTCAAAACAAGTAGAAAAAACCAAAGATCAATTCCAGCGCGACAATGCGAGATCGCCTATGACTAGAGGGATAAGCCAAAAATTCATGTCGCTTGGCTGAACTATTCTTTTACACCCGCCGTATTTTCCAGATTTTGCTTTTTCTGATGTATGGTTGTTTGAGGCTCTTAAACGTTATATTGATAGAAAAGACTTCAAGTGAAAAGATGACACCAAAAAGTAGTGGGCTCACTTTTTCAACCGCAGCTCTCGTCGTTCAGGGCCGATGGAATTGAGAAATTACCGGAGCGTTGTCAGACAATTACTGATGCCCGGATAATACTTCTGACCAGGTAAAAATTCACAAATTTTTTCTCGCATTTTCACCTTTATCAATATTTTTCAGTGGACCATTCTCTTCCTGTTCATCACTGGTATCATTATTGTGTGCAATGCTGGATTCCCATTCATCACAAAATCAGAAGCAGCGGATTACACRAAACCGAAGGATCGTACAATTGAAAAATATTAATTTTTTGAAAATTTGAAAATTTTTGTTTTTTGTGAAAACTCTGAAAAATCGTTCATTTCTTGTGTATACATGTTTTGGTTTTGTTTCCGAAAATTGTTTTTTTTTGAATAAAGAAAAAAAATTGTCTCAAAAATCCAAATTTTTCAATTGAATGCTCATTAATATTTATTAAGAATAAAAAATGGACTTTTTTTCAAACAAGCTTCTTAAAGCCACCATCCAGGGAGGTTATTGTAAATCTTGTTGCATCCGGTACGCTTGAATTCCTGAGTCTTGGTTGGTGTGGTCTTCATACAGCATCTGAATCCATTTCCGGTCATGCACGATCCCTCGTAAACAGTGGCACAGTTATGCACGCAGAGGTTGTAACAAGTCTTGTTTTGATGGGTTTCGTAGCTGTTCCATGGAGCGCAGTTGTCATAAGAAATCGATCCTTGAATTGATGCACAGTATTGCATACAGATGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATCACTGGTATCATTATTGTG</pcr_primer_p1>
		<pcr_primer_p2>AATTTGGATTTTTGAGACAATTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCATCACTGGTATCATTATTGTGTGCAATGCTGGATTCCCATTCATCACAAAATCAGAAGCAGCGGATTACACGAAACCGAAGGATCGTACAATTGAAAAATATTAATTTTTTGAAAATTTGAAAATTTTTGTTTTTTGTGAAAACTCTGAAAAATCGTTCATTTCTTGTGTATACATGTTTTGGTTTTGTTTCCGAAAATTGTTTTTTTTTGAATAAAGAAAAAAAATTGTCTCAAAAATCCAAATT</canonical_amplicon>
		<polymorphic_amplicon>TCATCACTGGTATCATTATTGTGTGCAATGCTGGATTCCCATTCATCACAAAATCAGAAGCAGCGGATTACACRAAACCGAAGGATCGTACAATTGAAAAATATTAATTTTTTGAAAATTTGAAAATTTTTGTTTTTTGTGAAAACTCTGAAAAATCGTTCATTTCTTGTGTATACATGTTTTGGTTTTGTTTCCGAAAATTGTTTTTTTTTGAATAAAGAAAAAAAATTGTCTCAAAAATCCAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35012</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>238918</contig_pos>
        <strand></strand>
        <context>attaattttt[T/C]gaaaatttga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCGGATTACACGAAACCGAAGGATCGTACAATTGAAAAATATTAATTTTT</left_flank>
        <right_flank>GAAAATTTGAAAATTTTTGTTTTTTGTGAAAACTCTGAAAAATCGTTCAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACCAAAGATCAATTCCAGCGCGACAATGCGAGATCGCCTATGACTAGAGGGATAAGCCAAAAATTCATGTCGCTTGGCTGAACTATTCTTTTACACCCGCCGTATTTTCCAGATTTTGCTTTTTCTGATGTATGGTTGTTTGAGGCTCTTAAACGTTATATTGATAGAAAAGACTTCAAGTGAAAAGATGACACCAAAAAGTAGTGGGCTCACTTTTTCAACCGCAGCTCTCGTCGTTCAGGGCCGATGGAATTGAGAAATTACCGGAGCGTTGTCAGACAATTACTGATGCCCGGATAATACTTCTGACCAGGTAAAAATTCACAAATTTTTTCTCGCATTTTCACCTTTATCAATATTTTTCAGTGGACCATTCTCTTCCTGTTCATCACTGGTATCATTATTGTGTGCAATGCTGGATTCCCATTCATCACAAAATCAGAAGCAGCGGATTACACGAAACCGAAGGATCGTACAATTGAAAAATATTAATTTTTTGAAAATTTGAAAATTTTTGTTTTTTGTGAAAACTCTGAAAAATCGTTCATTTCTTGTGTATACATGTTTTGGTTTTGTTTCCGAAAATTGTTTTTTTTTGAATAAAGAAAAAAAATTGTCTCAAAAATCCAAATTTTTCAATTGAATGCTCATTAATATTTATTAAGAATAAAAAATGGACTTTTTTTCAAACAAGCTTCTTAAAGCCACCATCCAGGGAGGTTATTGTAAATCTTGTTGCATCCGGTACGCTTGAATTCCTGAGTCTTGGTTGGTGTGGTCTTCATACAGCATCTGAATCCATTTCCGGTCATGCACGATCCCTCGTAAACAGTGGCACAGTTATGCACGCAGAGGTTGTAACAAGTCTTGTTTTGATGGGTTTCGTAGCTGTTCCATGGAGCGCAGTTGTCATAAGAAATCGATCCTTGAATTGATGCACAGTATTGCATACAGATGGCCATAAGGCCTTGCGAATTGGCGGCGACAACCAAGATAGT</canonical>
            <polymorphic>AAACCAAAGATCAATTCCAGCGCGACAATGCGAGATCGCCTATGACTAGAGGGATAAGCCAAAAATTCATGTCGCTTGGCTGAACTATTCTTTTACACCCGCCGTATTTTCCAGATTTTGCTTTTTCTGATGTATGGTTGTTTGAGGCTCTTAAACGTTATATTGATAGAAAAGACTTCAAGTGAAAAGATGACACCAAAAAGTAGTGGGCTCACTTTTTCAACCGCAGCTCTCGTCGTTCAGGGCCGATGGAATTGAGAAATTACCGGAGCGTTGTCAGACAATTACTGATGCCCGGATAATACTTCTGACCAGGTAAAAATTCACAAATTTTTTCTCGCATTTTCACCTTTATCAATATTTTTCAGTGGACCATTCTCTTCCTGTTCATCACTGGTATCATTATTGTGTGCAATGCTGGATTCCCATTCATCACAAAATCAGAAGCAGCGGATTACACGAAACCGAAGGATCGTACAATTGAAAAATATTAATTTTTYGAAAATTTGAAAATTTTTGTTTTTTGTGAAAACTCTGAAAAATCGTTCATTTCTTGTGTATACATGTTTTGGTTTTGTTTCCGAAAATTGTTTTTTTTTGAATAAAGAAAAAAAATTGTCTCAAAAATCCAAATTTTTCAATTGAATGCTCATTAATATTTATTAAGAATAAAAAATGGACTTTTTTTCAAACAAGCTTCTTAAAGCCACCATCCAGGGAGGTTATTGTAAATCTTGTTGCATCCGGTACGCTTGAATTCCTGAGTCTTGGTTGGTGTGGTCTTCATACAGCATCTGAATCCATTTCCGGTCATGCACGATCCCTCGTAAACAGTGGCACAGTTATGCACGCAGAGGTTGTAACAAGTCTTGTTTTGATGGGTTTCGTAGCTGTTCCATGGAGCGCAGTTGTCATAAGAAATCGATCCTTGAATTGATGCACAGTATTGCATACAGATGGCCATAAGGCCTTGCGAATTGGCGGCGACAACCAAGATAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATCACTGGTATCATTATTGTG</pcr_primer_p1>
		<pcr_primer_p2>AATTTGGATTTTTGAGACAATTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCATCACTGGTATCATTATTGTGTGCAATGCTGGATTCCCATTCATCACAAAATCAGAAGCAGCGGATTACACGAAACCGAAGGATCGTACAATTGAAAAATATTAATTTTTTGAAAATTTGAAAATTTTTGTTTTTTGTGAAAACTCTGAAAAATCGTTCATTTCTTGTGTATACATGTTTTGGTTTTGTTTCCGAAAATTGTTTTTTTTTGAATAAAGAAAAAAAATTGTCTCAAAAATCCAAATT</canonical_amplicon>
		<polymorphic_amplicon>TCATCACTGGTATCATTATTGTGTGCAATGCTGGATTCCCATTCATCACAAAATCAGAAGCAGCGGATTACACGAAACCGAAGGATCGTACAATTGAAAAATATTAATTTTTYGAAAATTTGAAAATTTTTGTTTTTTGTGAAAACTCTGAAAAATCGTTCATTTCTTGTGTATACATGTTTTGGTTTTGTTTCCGAAAATTGTTTTTTTTTGAATAAAGAAAAAAAATTGTCTCAAAAATCCAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35013</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>238989</contig_pos>
        <strand></strand>
        <context>TACATGTTTT[G/T]GTTTTGTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTTGTGAAAACTCTGAAAAATCGTTCATTTCTTGTGTATACATGTTTT</left_flank>
        <right_flank>GTTTTGTTTCCGAAAATTGTTTTTTTTTGAATAAAGAAAAAAAATTGTCT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGCTTGGCTGAACTATTCTTTTACACCCGCCGTATTTTCCAGATTTTGCTTTTTCTGATGTATGGTTGTTTGAGGCTCTTAAACGTTATATTGATAGAAAAGACTTCAAGTGAAAAGATGACACCAAAAAGTAGTGGGCTCACTTTTTCAACCGCAGCTCTCGTCGTTCAGGGCCGATGGAATTGAGAAATTACCGGAGCGTTGTCAGACAATTACTGATGCCCGGATAATACTTCTGACCAGGTAAAAATTCACAAATTTTTTCTCGCATTTTCACCTTTATCAATATTTTTCAGTGGACCATTCTCTTCCTGTTCATCACTGGTATCATTATTGTGTGCAATGCTGGATTCCCATTCATCACAAAATCAGAAGCAGCGGATTACACGAAACCGAAGGATCGTACAATTGAAAAATATTAATTTTTTGAAAATTTGAAAATTTTTGTTTTTTGTGAAAACTCTGAAAAATCGTTCATTTCTTGTGTATACATGTTTTGGTTTTGTTTCCGAAAATTGTTTTTTTTTGAATAAAGAAAAAAAATTGTCTCAAAAATCCAAATTTTTCAATTGAATGCTCATTAATATTTATTAAGAATAAAAAATGGACTTTTTTTCAAACAAGCTTCTTAAAGCCACCATCCAGGGAGGTTATTGTAAATCTTGTTGCATCCGGTACGCTTGAATTCCTGAGTCTTGGTTGGTGTGGTCTTCATACAGCATCTGAATCCATTTCCGGTCATGCACGATCCCTCGTAAACAGTGGCACAGTTATGCACGCAGAGGTTGTAACAAGTCTTGTTTTGATGGGTTTCGTAGCTGTTCCATGGAGCGCAGTTGTCATAAGAAATCGATCCTTGAATTGATGCACAGTATTGCATACAGATGGCCATAAGGCCTTGCGAATTGGCGGCGACAACCAAGATAGTGGCGGCGAGAAGAAGACGGAACAACTGGAAATTAATTATTGATTTTTTGAAATATTCAGAAGAGCCAACTC</canonical>
            <polymorphic>TCGCTTGGCTGAACTATTCTTTTACACCCGCCGTATTTTCCAGATTTTGCTTTTTCTGATGTATGGTTGTTTGAGGCTCTTAAACGTTATATTGATAGAAAAGACTTCAAGTGAAAAGATGACACCAAAAAGTAGTGGGCTCACTTTTTCAACCGCAGCTCTCGTCGTTCAGGGCCGATGGAATTGAGAAATTACCGGAGCGTTGTCAGACAATTACTGATGCCCGGATAATACTTCTGACCAGGTAAAAATTCACAAATTTTTTCTCGCATTTTCACCTTTATCAATATTTTTCAGTGGACCATTCTCTTCCTGTTCATCACTGGTATCATTATTGTGTGCAATGCTGGATTCCCATTCATCACAAAATCAGAAGCAGCGGATTACACGAAACCGAAGGATCGTACAATTGAAAAATATTAATTTTTTGAAAATTTGAAAATTTTTGTTTTTTGTGAAAACTCTGAAAAATCGTTCATTTCTTGTGTATACATGTTTTKGTTTTGTTTCCGAAAATTGTTTTTTTTTGAATAAAGAAAAAAAATTGTCTCAAAAATCCAAATTTTTCAATTGAATGCTCATTAATATTTATTAAGAATAAAAAATGGACTTTTTTTCAAACAAGCTTCTTAAAGCCACCATCCAGGGAGGTTATTGTAAATCTTGTTGCATCCGGTACGCTTGAATTCCTGAGTCTTGGTTGGTGTGGTCTTCATACAGCATCTGAATCCATTTCCGGTCATGCACGATCCCTCGTAAACAGTGGCACAGTTATGCACGCAGAGGTTGTAACAAGTCTTGTTTTGATGGGTTTCGTAGCTGTTCCATGGAGCGCAGTTGTCATAAGAAATCGATCCTTGAATTGATGCACAGTATTGCATACAGATGGCCATAAGGCCTTGCGAATTGGCGGCGACAACCAAGATAGTGGCGGCGAGAAGAAGACGGAACAACTGGAAATTAATTATTGATTTTTTGAAATATTCAGAAGAGCCAACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATCACTGGTATCATTATTGTG</pcr_primer_p1>
		<pcr_primer_p2>AATTTGGATTTTTGAGACAATTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCATCACTGGTATCATTATTGTGTGCAATGCTGGATTCCCATTCATCACAAAATCAGAAGCAGCGGATTACACGAAACCGAAGGATCGTACAATTGAAAAATATTAATTTTTTGAAAATTTGAAAATTTTTGTTTTTTGTGAAAACTCTGAAAAATCGTTCATTTCTTGTGTATACATGTTTTGGTTTTGTTTCCGAAAATTGTTTTTTTTTGAATAAAGAAAAAAAATTGTCTCAAAAATCCAAATT</canonical_amplicon>
		<polymorphic_amplicon>TCATCACTGGTATCATTATTGTGTGCAATGCTGGATTCCCATTCATCACAAAATCAGAAGCAGCGGATTACACGAAACCGAAGGATCGTACAATTGAAAAATATTAATTTTTTGAAAATTTGAAAATTTTTGTTTTTTGTGAAAACTCTGAAAAATCGTTCATTTCTTGTGTATACATGTTTTKGTTTTGTTTCCGAAAATTGTTTTTTTTTGAATAAAGAAAAAAAATTGTCTCAAAAATCCAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35014</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>259825</contig_pos>
        <strand>+</strand>
        <context>ATAAGGAGTC[A/G]RTTCCCTACC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAGAGTTGAGCCTTATCTTGCAAGATAAGACCACAACTCATAAGGAGTC</left_flank>
        <right_flank>GTTCCCTACCTAGCCATCTGCAAGGATCCATGCGTCCTAGTGACCTGGCT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATGCATCGAGTTGGCGTGCGTAAGGTTTTGAGCATTTGTGGTGTCTTCTCAATTATTGGAACCGTTCTTTTCCCGTTGGCAGTGGAATGGAATTTCGCTAGTGTGCTCGTAGTGAGGTTTCTGCAGGGGCTGGGCATCAGTATGGTGTTCACCGTGCTTGGCTCGGTGCCAATCGCCTGGGCCCCAAACAACGAATCCAGCACTTTTTTGGCAGTCTTGTCGTGCGCTTTTCAGGTGAGGCTTCAGGGAAGTTTGAAATTTATTCCAAAAAATCCAAACTTCTAGATGAGTAACGTTATCTGCATGCCTATCTCCGGCTTCCTCTGCGAGTCCTCCCTTGGCTGGCGTTCCATCTACTACCTTTTCGGAATCATCACCACCATCTGCTTCCTCATCTTCTACTTCTTCTACACCGACTCTCCAAAAGACCATCGCAATGTGTCGAACCAAGAGTTGAGCCTTATCTTGCAAGATAAGACCACAACTCATAAGGAGTCGGTTCCCTACCTAGCCATCTGCAAGGATCCATGCGTCCTAGTGACCTGGCTGTCCAACGTCGGTGGAAATCTCGGATTCCTCACACTGGTGCTCTATGGACCAACCTATCTTCGCGAAGTGCTCCACTTCGAAGTCCGTGGCACCGGATTCGCCAGCGCGTTGCCTTTCCTACTCTCGGCCGCCGTTAAATCCATCGCTGGACAGCTTTCAGATCGGTGTAATTTTGTCTCGGAGCGAGTTAGATTCACCATCTGTGGAATCATCTCCAGACTGGGTCTAGCAGTCGGTTATATCGGAATGGCCACCACGTCGAGCACCCTTGTAGCTCAGATCGCGTTCACATTCTCTATTGCAGTTTCCGGGTTGAATATCATGGGAACCGTAAAGTGTCTTCAGCTGGTAAGTATAACGGCTATCAAGTAGCTTATTTACCCTTCTGATTAACCTCTCTTGCCCTTTTTTCAGCGCTGCAAACAACATGTGCACTTTGCCGTCTCCAC</canonical>
            <polymorphic>TGATGCATCGAGTTGGCGTGCGTAAGGTTTTGAGCATTTGTGGTGTCTTCTCAATTATTGGAACCGTTCTTTTCCCGTTGGCAGTGGAATGGAATTTCGCTAGTGTGCTCGTAGTGAGGTTTCTGCAGGGGCTGGGCATCAGTATGGTGTTCACCGTGCTTGGCTCGGTGCCAATCGCCTGGGCCCCAAACAACGAATCCAGCACTTTTTTGGCAGTCTTGTCGTGCGCTTTTCAGGTGAGGCTTCAGGGAAGTTTGAAATTTATTCCAAAAAATCCAAACTTCTAGATGAGTAACGTTATCTGCATGCCTATCTCCGGCTTCCTCTGCGAGTCCTCCCTTGGCTGGCGTTCCATCTACTACCTTTTCGGAATCATCACCACCATCTGCTTCCTCATCTTCTACTTCTTCTACACCGACTCTCCAAAAGACCATCGCAATGTGTCGAACCAAGAGTTGAGCCTTATCTTGCAAGATAAGACCACAACTCATAAGGAGTCRGTTCCCTACCTAGCCATCTGCAAGGATCCATGCGTCCTAGTGACCTGGCTGTCCAACGTCGGTGGAAATCTCGGATTCCTCACACTGGTGCTCTATGGACCAACCTATCTTCGCGAAGTGCTCCACTTCGAAGTCCGTGGCACCGGATTCGCCAGCGCGTTGCCTTTCCTACTCTCGGCCGCCGTTAAATCCATCGCTGGACAGCTTTCAGATCGGTGTAATTTTGTCTCGGAGCGAGTTAGATTCACCATCTGTGGAATCATCTCCAGACTGGGTCTAGCAGTCGGTTATATCGGAATGGCCACCACGTCGAGCACCCTTGTAGCTCAGATCGCGTTCACATTCTCTATTGCAGTTTCCGGGTTGAATATCATGGGAACCGTAAAGTGTCTTCAGCTGGTAAGTATAACGGCTATCAAGTAGCTTATTTACCCTTCTGATTAACCTCTCTTGCCCTTTTTTCAGCGCTGCAAACAACATGTGCACTTTGCCGTCTCCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>319 237 122 115 107 62 24 14</canonical_bands>
                <polymorphic_bands>343 237 122 115 107 62 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTACTACCTTTTCGGAATCAT</pcr_primer_p1>
		<pcr_primer_p2>ATAGAGCACCAGTGTGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATCTACTACCTTTTCGGAATCATCACCACCATCTGCTTCCTCATCTTCTACTTCTTCTACACCGACTCTCCAAAAGACCATCGCAATGTGTCGAACCAAGAGTTGAGCCTTATCTTGCAAGATAAGACCACAACTCATAAGGAGTCGGTTCCCTACCTAGCCATCTGCAAGGATCCATGCGTCCTAGTGACCTGGCTGTCCAACGTCGGTGGAAATCTCGGATTCCTCACACTGGTGCTCTAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTACTACCTTTTCGGAATCATCACCACCATCTGCTTCCTCATCTTCTACTTCTTCTACACCGACTCTCCAAAAGACCATCGCAATGTGTCGAACCAAGAGTTGAGCCTTATCTTGCAAGATAAGACCACAACTCATAAGGAGTCRGTTCCCTACCTAGCCATCTGCAAGGATCCATGCGTCCTAGTGACCTGGCTGTCCAACGTCGGTGGAAATCTCGGATTCCTCACACTGGTGCTCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35015</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>259826</contig_pos>
        <strand>+</strand>
        <context>TAAGGAGTCR[A/G]TTCCCTACCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGAGTTGAGCCTTATCTTGCAAGATAAGACCACAACTCATAAGGAGTCG</left_flank>
        <right_flank>TTCCCTACCTAGCCATCTGCAAGGATCCATGCGTCCTAGTGACCTGGCTG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGCATCGAGTTGGCGTGCGTAAGGTTTTGAGCATTTGTGGTGTCTTCTCAATTATTGGAACCGTTCTTTTCCCGTTGGCAGTGGAATGGAATTTCGCTAGTGTGCTCGTAGTGAGGTTTCTGCAGGGGCTGGGCATCAGTATGGTGTTCACCGTGCTTGGCTCGGTGCCAATCGCCTGGGCCCCAAACAACGAATCCAGCACTTTTTTGGCAGTCTTGTCGTGCGCTTTTCAGGTGAGGCTTCAGGGAAGTTTGAAATTTATTCCAAAAAATCCAAACTTCTAGATGAGTAACGTTATCTGCATGCCTATCTCCGGCTTCCTCTGCGAGTCCTCCCTTGGCTGGCGTTCCATCTACTACCTTTTCGGAATCATCACCACCATCTGCTTCCTCATCTTCTACTTCTTCTACACCGACTCTCCAAAAGACCATCGCAATGTGTCGAACCAAGAGTTGAGCCTTATCTTGCAAGATAAGACCACAACTCATAAGGAGTCGGTTCCCTACCTAGCCATCTGCAAGGATCCATGCGTCCTAGTGACCTGGCTGTCCAACGTCGGTGGAAATCTCGGATTCCTCACACTGGTGCTCTATGGACCAACCTATCTTCGCGAAGTGCTCCACTTCGAAGTCCGTGGCACCGGATTCGCCAGCGCGTTGCCTTTCCTACTCTCGGCCGCCGTTAAATCCATCGCTGGACAGCTTTCAGATCGGTGTAATTTTGTCTCGGAGCGAGTTAGATTCACCATCTGTGGAATCATCTCCAGACTGGGTCTAGCAGTCGGTTATATCGGAATGGCCACCACGTCGAGCACCCTTGTAGCTCAGATCGCGTTCACATTCTCTATTGCAGTTTCCGGGTTGAATATCATGGGAACCGTAAAGTGTCTTCAGCTGGTAAGTATAACGGCTATCAAGTAGCTTATTTACCCTTCTGATTAACCTCTCTTGCCCTTTTTTCAGCGCTGCAAACAACATGTGCACTTTGCCGTCTCCACC</canonical>
            <polymorphic>GATGCATCGAGTTGGCGTGCGTAAGGTTTTGAGCATTTGTGGTGTCTTCTCAATTATTGGAACCGTTCTTTTCCCGTTGGCAGTGGAATGGAATTTCGCTAGTGTGCTCGTAGTGAGGTTTCTGCAGGGGCTGGGCATCAGTATGGTGTTCACCGTGCTTGGCTCGGTGCCAATCGCCTGGGCCCCAAACAACGAATCCAGCACTTTTTTGGCAGTCTTGTCGTGCGCTTTTCAGGTGAGGCTTCAGGGAAGTTTGAAATTTATTCCAAAAAATCCAAACTTCTAGATGAGTAACGTTATCTGCATGCCTATCTCCGGCTTCCTCTGCGAGTCCTCCCTTGGCTGGCGTTCCATCTACTACCTTTTCGGAATCATCACCACCATCTGCTTCCTCATCTTCTACTTCTTCTACACCGACTCTCCAAAAGACCATCGCAATGTGTCGAACCAAGAGTTGAGCCTTATCTTGCAAGATAAGACCACAACTCATAAGGAGTCGRTTCCCTACCTAGCCATCTGCAAGGATCCATGCGTCCTAGTGACCTGGCTGTCCAACGTCGGTGGAAATCTCGGATTCCTCACACTGGTGCTCTATGGACCAACCTATCTTCGCGAAGTGCTCCACTTCGAAGTCCGTGGCACCGGATTCGCCAGCGCGTTGCCTTTCCTACTCTCGGCCGCCGTTAAATCCATCGCTGGACAGCTTTCAGATCGGTGTAATTTTGTCTCGGAGCGAGTTAGATTCACCATCTGTGGAATCATCTCCAGACTGGGTCTAGCAGTCGGTTATATCGGAATGGCCACCACGTCGAGCACCCTTGTAGCTCAGATCGCGTTCACATTCTCTATTGCAGTTTCCGGGTTGAATATCATGGGAACCGTAAAGTGTCTTCAGCTGGTAAGTATAACGGCTATCAAGTAGCTTATTTACCCTTCTGATTAACCTCTCTTGCCCTTTTTTCAGCGCTGCAAACAACATGTGCACTTTGCCGTCTCCACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>319 237 123 115 107 61 24 14</canonical_bands>
                <polymorphic_bands>343 237 123 115 107 61 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTACTACCTTTTCGGAATCAT</pcr_primer_p1>
		<pcr_primer_p2>ATAGAGCACCAGTGTGAGGA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATCTACTACCTTTTCGGAATCATCACCACCATCTGCTTCCTCATCTTCTACTTCTTCTACACCGACTCTCCAAAAGACCATCGCAATGTGTCGAACCAAGAGTTGAGCCTTATCTTGCAAGATAAGACCACAACTCATAAGGAGTCGGTTCCCTACCTAGCCATCTGCAAGGATCCATGCGTCCTAGTGACCTGGCTGTCCAACGTCGGTGGAAATCTCGGATTCCTCACACTGGTGCTCTAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTACTACCTTTTCGGAATCATCACCACCATCTGCTTCCTCATCTTCTACTTCTTCTACACCGACTCTCCAAAAGACCATCGCAATGTGTCGAACCAAGAGTTGAGCCTTATCTTGCAAGATAAGACCACAACTCATAAGGAGTCGRTTCCCTACCTAGCCATCTGCAAGGATCCATGCGTCCTAGTGACCTGGCTGTCCAACGTCGGTGGAAATCTCGGATTCCTCACACTGGTGCTCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35016</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>259955</contig_pos>
        <strand>+</strand>
        <context>GCTCCACTTC[A/G]AAGTCCGTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCACACTGGTGCTCTATGGACCAACCTATCTTCGCGAAGTGCTCCACTTC</left_flank>
        <right_flank>AAGTCCGTGGCACCGGATTCGCCAGCGCGTTGCCTTTCCTACTCTCGGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTGGGCATCAGTATGGTGTTCACCGTGCTTGGCTCGGTGCCAATCGCCTGGGCCCCAAACAACGAATCCAGCACTTTTTTGGCAGTCTTGTCGTGCGCTTTTCAGGTGAGGCTTCAGGGAAGTTTGAAATTTATTCCAAAAAATCCAAACTTCTAGATGAGTAACGTTATCTGCATGCCTATCTCCGGCTTCCTCTGCGAGTCCTCCCTTGGCTGGCGTTCCATCTACTACCTTTTCGGAATCATCACCACCATCTGCTTCCTCATCTTCTACTTCTTCTACACCGACTCTCCAAAAGACCATCGCAATGTGTCGAACCAAGAGTTGAGCCTTATCTTGCAAGATAAGACCACAACTCATAAGGAGTCGGTTCCCTACCTAGCCATCTGCAAGGATCCATGCGTCCTAGTGACCTGGCTGTCCAACGTCGGTGGAAATCTCGGATTCCTCACACTGGTGCTCTATGGACCAACCTATCTTCGCGAAGTGCTCCACTTCGAAGTCCGTGGCACCGGATTCGCCAGCGCGTTGCCTTTCCTACTCTCGGCCGCCGTTAAATCCATCGCTGGACAGCTTTCAGATCGGTGTAATTTTGTCTCGGAGCGAGTTAGATTCACCATCTGTGGAATCATCTCCAGACTGGGTCTAGCAGTCGGTTATATCGGAATGGCCACCACGTCGAGCACCCTTGTAGCTCAGATCGCGTTCACATTCTCTATTGCAGTTTCCGGGTTGAATATCATGGGAACCGTAAAGTGTCTTCAGCTGGTAAGTATAACGGCTATCAAGTAGCTTATTTACCCTTCTGATTAACCTCTCTTGCCCTTTTTTCAGCGCTGCAAACAACATGTGCACTTTGCCGTCTCCACCATCGCTCTCATGGCCTATGTGATTCAATTCGGCGCTCCGATCCTTGTCGGTATCATTTGTCCGGATAACACGCCCGAACAGTGGGGATGGCTATTCATGATCATCGGAGTGATCGTATTCGCCACCAGC</canonical>
            <polymorphic>GCTGGGCATCAGTATGGTGTTCACCGTGCTTGGCTCGGTGCCAATCGCCTGGGCCCCAAACAACGAATCCAGCACTTTTTTGGCAGTCTTGTCGTGCGCTTTTCAGGTGAGGCTTCAGGGAAGTTTGAAATTTATTCCAAAAAATCCAAACTTCTAGATGAGTAACGTTATCTGCATGCCTATCTCCGGCTTCCTCTGCGAGTCCTCCCTTGGCTGGCGTTCCATCTACTACCTTTTCGGAATCATCACCACCATCTGCTTCCTCATCTTCTACTTCTTCTACACCGACTCTCCAAAAGACCATCGCAATGTGTCGAACCAAGAGTTGAGCCTTATCTTGCAAGATAAGACCACAACTCATAAGGAGTCGGTTCCCTACCTAGCCATCTGCAAGGATCCATGCGTCCTAGTGACCTGGCTGTCCAACGTCGGTGGAAATCTCGGATTCCTCACACTGGTGCTCTATGGACCAACCTATCTTCGCGAAGTGCTCCACTTCRAAGTCCGTGGCACCGGATTCGCCAGCGCGTTGCCTTTCCTACTCTCGGCCGCCGTTAAATCCATCGCTGGACAGCTTTCAGATCGGTGTAATTTTGTCTCGGAGCGAGTTAGATTCACCATCTGTGGAATCATCTCCAGACTGGGTCTAGCAGTCGGTTATATCGGAATGGCCACCACGTCGAGCACCCTTGTAGCTCAGATCGCGTTCACATTCTCTATTGCAGTTTCCGGGTTGAATATCATGGGAACCGTAAAGTGTCTTCAGCTGGTAAGTATAACGGCTATCAAGTAGCTTATTTACCCTTCTGATTAACCTCTCTTGCCCTTTTTTCAGCGCTGCAAACAACATGTGCACTTTGCCGTCTCCACCATCGCTCTCATGGCCTATGTGATTCAATTCGGCGCTCCGATCCTTGTCGGTATCATTTGTCCGGATAACACGCCCGAACAGTGGGGATGGCTATTCATGATCATCGGAGTGATCGTATTCGCCACCAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>319 315 184 182</canonical_bands>
                <polymorphic_bands>366 319 315</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATAAGACCACAACTCATAAGG</pcr_primer_p1>
		<pcr_primer_p2>CAAAATTACACCGATCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AGATAAGACCACAACTCATAAGGAGTCGGTTCCCTACCTAGCCATCTGCAAGGATCCATGCGTCCTAGTGACCTGGCTGTCCAACGTCGGTGGAAATCTCGGATTCCTCACACTGGTGCTCTATGGACCAACCTATCTTCGCGAAGTGCTCCACTTCGAAGTCCGTGGCACCGGATTCGCCAGCGCGTTGCCTTTCCTACTCTCGGCCGCCGTTAAATCCATCGCTGGACAGCTTTCAGATCGGTGTAATTTTG</canonical_amplicon>
		<polymorphic_amplicon>AGATAAGACCACAACTCATAAGGAGTCGGTTCCCTACCTAGCCATCTGCAAGGATCCATGCGTCCTAGTGACCTGGCTGTCCAACGTCGGTGGAAATCTCGGATTCCTCACACTGGTGCTCTATGGACCAACCTATCTTCGCGAAGTGCTCCACTTCRAAGTCCGTGGCACCGGATTCGCCAGCGCGTTGCCTTTCCTACTCTCGGCCGCCGTTAAATCCATCGCTGGACAGCTTTCAGATCGGTGTAATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35017</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>311267</contig_pos>
        <strand></strand>
        <context>AATAACGGAG[A/C]AAACTGATAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCTGAAAAATCGAAATGTTCACCGACCATTTGAAACGAAAATAACGGAG</left_flank>
        <right_flank>AAACTGATACAAAATATGCCTTCGAAATTTCCTATAATTTTCTAATCGTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTGGAGGAATCAAAAAAGCAATGATGATCAGATATAATCAGTTTGCCGGCTGAGCAAGCTTGAATTTTTTTTTGAAATGTTTATCTTTTTCAAATTCTTGTGATCATTGAAATATAAAATTTTTTTTAGTATCTATAAATTGTCATTCGTATTCTTTTCAGTTAAAAACAGTTTATAAATTAGTTCCAAGTGCATTTTCTAGTTGTCTAGATCTTCTTCTGAAAACCAAACGAATGCTTTGTACATTTTCTCTCGATGCAATATATGAAATAGACACTATAATTGGTATCCATGGCGTTAAAAGAAAATAGAACAACGTCAAAAAAGCAAAAGTTTCCCGGCGAAATTCACGAACAATTAGGTCTGTAATTGTAGCGATACTGTGGACCTGTAATCTAATAAAATTATTTGAAAAATCCGAAGAAAATCGGCGATTCTGAGCGACGATTCTGAAAAATCGAAATGTTCACCGACCATTTGAAACGAAAATAACGGAGAAAACTGATACAAAATATGCCTTCGAAATTTCCTATAATTTTCTAATCGTCCCAAAATTCGATACACAAAAATATAAAATCCATGAGATATAAAAGTGAGAAATATGAAAAATAAATTGTAAAAAATGTCGAGTTCTTGAAATTTAGCGTTTTCACAATTGGGTTTGTAGAAATTGAAACCGCATTTATCTGAAAACGTTTTTTGGGGAAGTTTTTGAAAATTGGAACAAAAAAGTTACAAAAAACAAACGCCCGGTGAGCCAAACATATATAAGTGAAGATAATCTGAACTTTCAGCCAAAAACTGTAAATTTTCAACTTTTCCTATATTAAAAACATATATCTCTAATTACCCGGTAATCAAAAATTTGAATTTTGGCATTTTAACAATCACAATTTTTTGTAAAACTGCTAAAAATGAAAAAGCAGTTATTGAAGAAAAAACAACTTCTAGTAATTGCCCGAAATACGATTCCAGAAGCATCAGAATAACAACAAAAA</canonical>
            <polymorphic>GACTGGAGGAATCAAAAAAGCAATGATGATCAGATATAATCAGTTTGCCGGCTGAGCAAGCTTGAATTTTTTTTTGAAATGTTTATCTTTTTCAAATTCTTGTGATCATTGAAATATAAAATTTTTTTTAGTATCTATAAATTGTCATTCGTATTCTTTTCAGTTAAAAACAGTTTATAAATTAGTTCCAAGTGCATTTTCTAGTTGTCTAGATCTTCTTCTGAAAACCAAACGAATGCTTTGTACATTTTCTCTCGATGCAATATATGAAATAGACACTATAATTGGTATCCATGGCGTTAAAAGAAAATAGAACAACGTCAAAAAAGCAAAAGTTTCCCGGCGAAATTCACGAACAATTAGGTCTGTAATTGTAGCGATACTGTGGACCTGTAATCTAATAAAATTATTTGAAAAATCCGAAGAAAATCGGCGATTCTGAGCGACGATTCTGAAAAATCGAAATGTTCACCGACCATTTGAAACGAAAATAACGGAGMAAACTGATACAAAATATGCCTTCGAAATTTCCTATAATTTTCTAATCGTCCCAAAATTCGATACACAAAAATATAAAATCCATGAGATATAAAAGTGAGAAATATGAAAAATAAATTGTAAAAAATGTCGAGTTCTTGAAATTTAGCGTTTTCACAATTGGGTTTGTAGAAATTGAAACCGCATTTATCTGAAAACGTTTTTTGGGGAAGTTTTTGAAAATTGGAACAAAAAAGTTACAAAAAACAAACGCCCGGTGAGCCAAACATATATAAGTGAAGATAATCTGAACTTTCAGCCAAAAACTGTAAATTTTCAACTTTTCCTATATTAAAAACATATATCTCTAATTACCCGGTAATCAAAAATTTGAATTTTGGCATTTTAACAATCACAATTTTTTGTAAAACTGCTAAAAATGAAAAAGCAGTTATTGAAGAAAAAACAACTTCTAGTAATTGCCCGAAATACGATTCCAGAAGCATCAGAATAACAACAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAATAGAACAACGTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGGGACGATTAGAAAATTATAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAAATAGAACAACGTCAAAAAAGCAAAAGTTTCCCGGCGAAATTCACGAACAATTAGGTCTGTAATTGTAGCGATACTGTGGACCTGTAATCTAATAAAATTATTTGAAAAATCCGAAGAAAATCGGCGATTCTGAGCGACGATTCTGAAAAATCGAAATGTTCACCGACCATTTGAAACGAAAATAACGGAGAAAACTGATACAAAATATGCCTTCGAAATTTCCTATAATTTTCTAATCGTCCCAA</canonical_amplicon>
		<polymorphic_amplicon>AGAAAATAGAACAACGTCAAAAAAGCAAAAGTTTCCCGGCGAAATTCACGAACAATTAGGTCTGTAATTGTAGCGATACTGTGGACCTGTAATCTAATAAAATTATTTGAAAAATCCGAAGAAAATCGGCGATTCTGAGCGACGATTCTGAAAAATCGAAATGTTCACCGACCATTTGAAACGAAAATAACGGAGMAAACTGATACAAAATATGCCTTCGAAATTTCCTATAATTTTCTAATCGTCCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35018</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>311355</contig_pos>
        <strand></strand>
        <context>ATCCATGAGA[T/A]ATAAAAGTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTTCTAATCGTCCCAAAATTCGATACACAAAAATATAAAATCCATGAGA</left_flank>
        <right_flank>ATAAAAGTGAGAAATATGAAAAATAAATTGTAAAAAATGTCGAGTTCTTG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCAAATTCTTGTGATCATTGAAATATAAAATTTTTTTTAGTATCTATAAATTGTCATTCGTATTCTTTTCAGTTAAAAACAGTTTATAAATTAGTTCCAAGTGCATTTTCTAGTTGTCTAGATCTTCTTCTGAAAACCAAACGAATGCTTTGTACATTTTCTCTCGATGCAATATATGAAATAGACACTATAATTGGTATCCATGGCGTTAAAAGAAAATAGAACAACGTCAAAAAAGCAAAAGTTTCCCGGCGAAATTCACGAACAATTAGGTCTGTAATTGTAGCGATACTGTGGACCTGTAATCTAATAAAATTATTTGAAAAATCCGAAGAAAATCGGCGATTCTGAGCGACGATTCTGAAAAATCGAAATGTTCACCGACCATTTGAAACGAAAATAACGGAGAAAACTGATACAAAATATGCCTTCGAAATTTCCTATAATTTTCTAATCGTCCCAAAATTCGATACACAAAAATATAAAATCCATGAGATATAAAAGTGAGAAATATGAAAAATAAATTGTAAAAAATGTCGAGTTCTTGAAATTTAGCGTTTTCACAATTGGGTTTGTAGAAATTGAAACCGCATTTATCTGAAAACGTTTTTTGGGGAAGTTTTTGAAAATTGGAACAAAAAAGTTACAAAAAACAAACGCCCGGTGAGCCAAACATATATAAGTGAAGATAATCTGAACTTTCAGCCAAAAACTGTAAATTTTCAACTTTTCCTATATTAAAAACATATATCTCTAATTACCCGGTAATCAAAAATTTGAATTTTGGCATTTTAACAATCACAATTTTTTGTAAAACTGCTAAAAATGAAAAAGCAGTTATTGAAGAAAAAACAACTTCTAGTAATTGCCCGAAATACGATTCCAGAAGCATCAGAATAACAACAAAAAACATCAAAGTCGTGTCTTCACTGGCTGGATCTCCAATAAAACGTAATAAGATACATAGGTCAAAAACAGCTAAAGTGAATAGTGATAT</canonical>
            <polymorphic>TTTTCAAATTCTTGTGATCATTGAAATATAAAATTTTTTTTAGTATCTATAAATTGTCATTCGTATTCTTTTCAGTTAAAAACAGTTTATAAATTAGTTCCAAGTGCATTTTCTAGTTGTCTAGATCTTCTTCTGAAAACCAAACGAATGCTTTGTACATTTTCTCTCGATGCAATATATGAAATAGACACTATAATTGGTATCCATGGCGTTAAAAGAAAATAGAACAACGTCAAAAAAGCAAAAGTTTCCCGGCGAAATTCACGAACAATTAGGTCTGTAATTGTAGCGATACTGTGGACCTGTAATCTAATAAAATTATTTGAAAAATCCGAAGAAAATCGGCGATTCTGAGCGACGATTCTGAAAAATCGAAATGTTCACCGACCATTTGAAACGAAAATAACGGAGAAAACTGATACAAAATATGCCTTCGAAATTTCCTATAATTTTCTAATCGTCCCAAAATTCGATACACAAAAATATAAAATCCATGAGAWATAAAAGTGAGAAATATGAAAAATAAATTGTAAAAAATGTCGAGTTCTTGAAATTTAGCGTTTTCACAATTGGGTTTGTAGAAATTGAAACCGCATTTATCTGAAAACGTTTTTTGGGGAAGTTTTTGAAAATTGGAACAAAAAAGTTACAAAAAACAAACGCCCGGTGAGCCAAACATATATAAGTGAAGATAATCTGAACTTTCAGCCAAAAACTGTAAATTTTCAACTTTTCCTATATTAAAAACATATATCTCTAATTACCCGGTAATCAAAAATTTGAATTTTGGCATTTTAACAATCACAATTTTTTGTAAAACTGCTAAAAATGAAAAAGCAGTTATTGAAGAAAAAACAACTTCTAGTAATTGCCCGAAATACGATTCCAGAAGCATCAGAATAACAACAAAAAACATCAAAGTCGTGTCTTCACTGGCTGGATCTCCAATAAAACGTAATAAGATACATAGGTCAAAAACAGCTAAAGTGAATAGTGATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTATTTGAAAAATCCGAAGA</pcr_primer_p1>
		<pcr_primer_p2>AAAACGCTAAATTTCAAGAACTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATTATTTGAAAAATCCGAAGAAAATCGGCGATTCTGAGCGACGATTCTGAAAAATCGAAATGTTCACCGACCATTTGAAACGAAAATAACGGAGAAAACTGATACAAAATATGCCTTCGAAATTTCCTATAATTTTCTAATCGTCCCAAAATTCGATACACAAAAATATAAAATCCATGAGATATAAAAGTGAGAAATATGAAAAATAAATTGTAAAAAATGTCGAGTTCTTGAAATTTAGCGTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAATTATTTGAAAAATCCGAAGAAAATCGGCGATTCTGAGCGACGATTCTGAAAAATCGAAATGTTCACCGACCATTTGAAACGAAAATAACGGAGAAAACTGATACAAAATATGCCTTCGAAATTTCCTATAATTTTCTAATCGTCCCAAAATTCGATACACAAAAATATAAAATCCATGAGAWATAAAAGTGAGAAATATGAAAAATAAATTGTAAAAAATGTCGAGTTCTTGAAATTTAGCGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35019</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>311481</contig_pos>
        <strand></strand>
        <context>GGGGAAGTTT[T/A]TGAAAATTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTGTAGAAATTGAAACCGCATTTATCTGAAAACGTTTTTTGGGGAAGTTT</left_flank>
        <right_flank>TGAAAATTGGAACAAAAAAGTTACAAAAAACAAACGCCCGGTGAGCCAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCTTCTGAAAACCAAACGAATGCTTTGTACATTTTCTCTCGATGCAATATATGAAATAGACACTATAATTGGTATCCATGGCGTTAAAAGAAAATAGAACAACGTCAAAAAAGCAAAAGTTTCCCGGCGAAATTCACGAACAATTAGGTCTGTAATTGTAGCGATACTGTGGACCTGTAATCTAATAAAATTATTTGAAAAATCCGAAGAAAATCGGCGATTCTGAGCGACGATTCTGAAAAATCGAAATGTTCACCGACCATTTGAAACGAAAATAACGGAGAAAACTGATACAAAATATGCCTTCGAAATTTCCTATAATTTTCTAATCGTCCCAAAATTCGATACACAAAAATATAAAATCCATGAGATATAAAAGTGAGAAATATGAAAAATAAATTGTAAAAAATGTCGAGTTCTTGAAATTTAGCGTTTTCACAATTGGGTTTGTAGAAATTGAAACCGCATTTATCTGAAAACGTTTTTTGGGGAAGTTTTTGAAAATTGGAACAAAAAAGTTACAAAAAACAAACGCCCGGTGAGCCAAACATATATAAGTGAAGATAATCTGAACTTTCAGCCAAAAACTGTAAATTTTCAACTTTTCCTATATTAAAAACATATATCTCTAATTACCCGGTAATCAAAAATTTGAATTTTGGCATTTTAACAATCACAATTTTTTGTAAAACTGCTAAAAATGAAAAAGCAGTTATTGAAGAAAAAACAACTTCTAGTAATTGCCCGAAATACGATTCCAGAAGCATCAGAATAACAACAAAAAACATCAAAGTCGTGTCTTCACTGGCTGGATCTCCAATAAAACGTAATAAGATACATAGGTCAAAAACAGCTAAAGTGAATAGTGATATATAAAATAATTGATCAAAAATCATCTTTTCAAATTCAATGAAATTTTCATTTTTTGTTTTTCCAGCCAGTTTTGAAATTCTATAAAAAATGAGAAGAGCAAAAAGCGTATTGCTCAGAATTGCGGT</canonical>
            <polymorphic>CTTCTTCTGAAAACCAAACGAATGCTTTGTACATTTTCTCTCGATGCAATATATGAAATAGACACTATAATTGGTATCCATGGCGTTAAAAGAAAATAGAACAACGTCAAAAAAGCAAAAGTTTCCCGGCGAAATTCACGAACAATTAGGTCTGTAATTGTAGCGATACTGTGGACCTGTAATCTAATAAAATTATTTGAAAAATCCGAAGAAAATCGGCGATTCTGAGCGACGATTCTGAAAAATCGAAATGTTCACCGACCATTTGAAACGAAAATAACGGAGAAAACTGATACAAAATATGCCTTCGAAATTTCCTATAATTTTCTAATCGTCCCAAAATTCGATACACAAAAATATAAAATCCATGAGATATAAAAGTGAGAAATATGAAAAATAAATTGTAAAAAATGTCGAGTTCTTGAAATTTAGCGTTTTCACAATTGGGTTTGTAGAAATTGAAACCGCATTTATCTGAAAACGTTTTTTGGGGAAGTTTWTGAAAATTGGAACAAAAAAGTTACAAAAAACAAACGCCCGGTGAGCCAAACATATATAAGTGAAGATAATCTGAACTTTCAGCCAAAAACTGTAAATTTTCAACTTTTCCTATATTAAAAACATATATCTCTAATTACCCGGTAATCAAAAATTTGAATTTTGGCATTTTAACAATCACAATTTTTTGTAAAACTGCTAAAAATGAAAAAGCAGTTATTGAAGAAAAAACAACTTCTAGTAATTGCCCGAAATACGATTCCAGAAGCATCAGAATAACAACAAAAAACATCAAAGTCGTGTCTTCACTGGCTGGATCTCCAATAAAACGTAATAAGATACATAGGTCAAAAACAGCTAAAGTGAATAGTGATATATAAAATAATTGATCAAAAATCATCTTTTCAAATTCAATGAAATTTTCATTTTTTGTTTTTCCAGCCAGTTTTGAAATTCTATAAAAAATGAGAAGAGCAAAAAGCGTATTGCTCAGAATTGCGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACAAAAATATAAAATCCATGAG</pcr_primer_p1>
		<pcr_primer_p2>AAATTTACAGTTTTTGGCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACACAAAAATATAAAATCCATGAGATATAAAAGTGAGAAATATGAAAAATAAATTGTAAAAAATGTCGAGTTCTTGAAATTTAGCGTTTTCACAATTGGGTTTGTAGAAATTGAAACCGCATTTATCTGAAAACGTTTTTTGGGGAAGTTTTTGAAAATTGGAACAAAAAAGTTACAAAAAACAAACGCCCGGTGAGCCAAACATATATAAGTGAAGATAATCTGAACTTTCAGCCAAAAACTGTAAATTT</canonical_amplicon>
		<polymorphic_amplicon>ACACAAAAATATAAAATCCATGAGATATAAAAGTGAGAAATATGAAAAATAAATTGTAAAAAATGTCGAGTTCTTGAAATTTAGCGTTTTCACAATTGGGTTTGTAGAAATTGAAACCGCATTTATCTGAAAACGTTTTTTGGGGAAGTTTWTGAAAATTGGAACAAAAAAGTTACAAAAAACAAACGCCCGGTGAGCCAAACATATATAAGTGAAGATAATCTGAACTTTCAGCCAAAAACTGTAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35020</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>311543</contig_pos>
        <strand></strand>
        <context>ATATATAAGT[G/A]AAGATAATCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACAAAAAAGTTACAAAAAACAAACGCCCGGTGAGCCAAACATATATAAGT</left_flank>
        <right_flank>AAGATAATCTGAACTTTCAGCCAAAAACTGTAAATTTTCAACTTTTCCTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACTATAATTGGTATCCATGGCGTTAAAAGAAAATAGAACAACGTCAAAAAAGCAAAAGTTTCCCGGCGAAATTCACGAACAATTAGGTCTGTAATTGTAGCGATACTGTGGACCTGTAATCTAATAAAATTATTTGAAAAATCCGAAGAAAATCGGCGATTCTGAGCGACGATTCTGAAAAATCGAAATGTTCACCGACCATTTGAAACGAAAATAACGGAGAAAACTGATACAAAATATGCCTTCGAAATTTCCTATAATTTTCTAATCGTCCCAAAATTCGATACACAAAAATATAAAATCCATGAGATATAAAAGTGAGAAATATGAAAAATAAATTGTAAAAAATGTCGAGTTCTTGAAATTTAGCGTTTTCACAATTGGGTTTGTAGAAATTGAAACCGCATTTATCTGAAAACGTTTTTTGGGGAAGTTTTTGAAAATTGGAACAAAAAAGTTACAAAAAACAAACGCCCGGTGAGCCAAACATATATAAGTGAAGATAATCTGAACTTTCAGCCAAAAACTGTAAATTTTCAACTTTTCCTATATTAAAAACATATATCTCTAATTACCCGGTAATCAAAAATTTGAATTTTGGCATTTTAACAATCACAATTTTTTGTAAAACTGCTAAAAATGAAAAAGCAGTTATTGAAGAAAAAACAACTTCTAGTAATTGCCCGAAATACGATTCCAGAAGCATCAGAATAACAACAAAAAACATCAAAGTCGTGTCTTCACTGGCTGGATCTCCAATAAAACGTAATAAGATACATAGGTCAAAAACAGCTAAAGTGAATAGTGATATATAAAATAATTGATCAAAAATCATCTTTTCAAATTCAATGAAATTTTCATTTTTTGTTTTTCCAGCCAGTTTTGAAATTCTATAAAAAATGAGAAGAGCAAAAAGCGTATTGCTCAGAATTGCGGTTATTATTGAATACTCTTCGTATAATAATAATTCTGTATTAGAGATTTTCAATTTTTTTCCAG</canonical>
            <polymorphic>CACTATAATTGGTATCCATGGCGTTAAAAGAAAATAGAACAACGTCAAAAAAGCAAAAGTTTCCCGGCGAAATTCACGAACAATTAGGTCTGTAATTGTAGCGATACTGTGGACCTGTAATCTAATAAAATTATTTGAAAAATCCGAAGAAAATCGGCGATTCTGAGCGACGATTCTGAAAAATCGAAATGTTCACCGACCATTTGAAACGAAAATAACGGAGAAAACTGATACAAAATATGCCTTCGAAATTTCCTATAATTTTCTAATCGTCCCAAAATTCGATACACAAAAATATAAAATCCATGAGATATAAAAGTGAGAAATATGAAAAATAAATTGTAAAAAATGTCGAGTTCTTGAAATTTAGCGTTTTCACAATTGGGTTTGTAGAAATTGAAACCGCATTTATCTGAAAACGTTTTTTGGGGAAGTTTTTGAAAATTGGAACAAAAAAGTTACAAAAAACAAACGCCCGGTGAGCCAAACATATATAAGTRAAGATAATCTGAACTTTCAGCCAAAAACTGTAAATTTTCAACTTTTCCTATATTAAAAACATATATCTCTAATTACCCGGTAATCAAAAATTTGAATTTTGGCATTTTAACAATCACAATTTTTTGTAAAACTGCTAAAAATGAAAAAGCAGTTATTGAAGAAAAAACAACTTCTAGTAATTGCCCGAAATACGATTCCAGAAGCATCAGAATAACAACAAAAAACATCAAAGTCGTGTCTTCACTGGCTGGATCTCCAATAAAACGTAATAAGATACATAGGTCAAAAACAGCTAAAGTGAATAGTGATATATAAAATAATTGATCAAAAATCATCTTTTCAAATTCAATGAAATTTTCATTTTTTGTTTTTCCAGCCAGTTTTGAAATTCTATAAAAAATGAGAAGAGCAAAAAGCGTATTGCTCAGAATTGCGGTTATTATTGAATACTCTTCGTATAATAATAATTCTGTATTAGAGATTTTCAATTTTTTTCCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>192 122 116 103 94 84 74 57 57 35 32 19 7 6 2</canonical_bands>
                <polymorphic_bands>192 135 122 103 94 84 74 57 57 35 32 7 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCACAATTGGGTTTGTAG</pcr_primer_p1>
		<pcr_primer_p2>GTGATTGTTAAAATGCCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCACAATTGGGTTTGTAGAAATTGAAACCGCATTTATCTGAAAACGTTTTTTGGGGAAGTTTTTGAAAATTGGAACAAAAAAGTTACAAAAAACAAACGCCCGGTGAGCCAAACATATATAAGTGAAGATAATCTGAACTTTCAGCCAAAAACTGTAAATTTTCAACTTTTCCTATATTAAAAACATATATCTCTAATTACCCGGTAATCAAAAATTTGAATTTTGGCATTTTAACAATCAC</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCACAATTGGGTTTGTAGAAATTGAAACCGCATTTATCTGAAAACGTTTTTTGGGGAAGTTTTTGAAAATTGGAACAAAAAAGTTACAAAAAACAAACGCCCGGTGAGCCAAACATATATAAGTRAAGATAATCTGAACTTTCAGCCAAAAACTGTAAATTTTCAACTTTTCCTATATTAAAAACATATATCTCTAATTACCCGGTAATCAAAAATTTGAATTTTGGCATTTTAACAATCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35021</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>311557</contig_pos>
        <strand></strand>
        <context>ATAATCTGAA[C/T]TTTCAGCCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAACAAACGCCCGGTGAGCCAAACATATATAAGTGAAGATAATCTGAA</left_flank>
        <right_flank>TTTCAGCCAAAAACTGTAAATTTTCAACTTTTCCTATATTAAAAACATAT</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCATGGCGTTAAAAGAAAATAGAACAACGTCAAAAAAGCAAAAGTTTCCCGGCGAAATTCACGAACAATTAGGTCTGTAATTGTAGCGATACTGTGGACCTGTAATCTAATAAAATTATTTGAAAAATCCGAAGAAAATCGGCGATTCTGAGCGACGATTCTGAAAAATCGAAATGTTCACCGACCATTTGAAACGAAAATAACGGAGAAAACTGATACAAAATATGCCTTCGAAATTTCCTATAATTTTCTAATCGTCCCAAAATTCGATACACAAAAATATAAAATCCATGAGATATAAAAGTGAGAAATATGAAAAATAAATTGTAAAAAATGTCGAGTTCTTGAAATTTAGCGTTTTCACAATTGGGTTTGTAGAAATTGAAACCGCATTTATCTGAAAACGTTTTTTGGGGAAGTTTTTGAAAATTGGAACAAAAAAGTTACAAAAAACAAACGCCCGGTGAGCCAAACATATATAAGTGAAGATAATCTGAACTTTCAGCCAAAAACTGTAAATTTTCAACTTTTCCTATATTAAAAACATATATCTCTAATTACCCGGTAATCAAAAATTTGAATTTTGGCATTTTAACAATCACAATTTTTTGTAAAACTGCTAAAAATGAAAAAGCAGTTATTGAAGAAAAAACAACTTCTAGTAATTGCCCGAAATACGATTCCAGAAGCATCAGAATAACAACAAAAAACATCAAAGTCGTGTCTTCACTGGCTGGATCTCCAATAAAACGTAATAAGATACATAGGTCAAAAACAGCTAAAGTGAATAGTGATATATAAAATAATTGATCAAAAATCATCTTTTCAAATTCAATGAAATTTTCATTTTTTGTTTTTCCAGCCAGTTTTGAAATTCTATAAAAAATGAGAAGAGCAAAAAGCGTATTGCTCAGAATTGCGGTTATTATTGAATACTCTTCGTATAATAATAATTCTGTATTAGAGATTTTCAATTTTTTTCCAGAAAAAAAGTTAGGT</canonical>
            <polymorphic>TCCATGGCGTTAAAAGAAAATAGAACAACGTCAAAAAAGCAAAAGTTTCCCGGCGAAATTCACGAACAATTAGGTCTGTAATTGTAGCGATACTGTGGACCTGTAATCTAATAAAATTATTTGAAAAATCCGAAGAAAATCGGCGATTCTGAGCGACGATTCTGAAAAATCGAAATGTTCACCGACCATTTGAAACGAAAATAACGGAGAAAACTGATACAAAATATGCCTTCGAAATTTCCTATAATTTTCTAATCGTCCCAAAATTCGATACACAAAAATATAAAATCCATGAGATATAAAAGTGAGAAATATGAAAAATAAATTGTAAAAAATGTCGAGTTCTTGAAATTTAGCGTTTTCACAATTGGGTTTGTAGAAATTGAAACCGCATTTATCTGAAAACGTTTTTTGGGGAAGTTTTTGAAAATTGGAACAAAAAAGTTACAAAAAACAAACGCCCGGTGAGCCAAACATATATAAGTGAAGATAATCTGAAYTTTCAGCCAAAAACTGTAAATTTTCAACTTTTCCTATATTAAAAACATATATCTCTAATTACCCGGTAATCAAAAATTTGAATTTTGGCATTTTAACAATCACAATTTTTTGTAAAACTGCTAAAAATGAAAAAGCAGTTATTGAAGAAAAAACAACTTCTAGTAATTGCCCGAAATACGATTCCAGAAGCATCAGAATAACAACAAAAAACATCAAAGTCGTGTCTTCACTGGCTGGATCTCCAATAAAACGTAATAAGATACATAGGTCAAAAACAGCTAAAGTGAATAGTGATATATAAAATAATTGATCAAAAATCATCTTTTCAAATTCAATGAAATTTTCATTTTTTGTTTTTCCAGCCAGTTTTGAAATTCTATAAAAAATGAGAAGAGCAAAAAGCGTATTGCTCAGAATTGCGGTTATTATTGAATACTCTTCGTATAATAATAATTCTGTATTAGAGATTTTCAATTTTTTTCCAGAAAAAAAGTTAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCACAATTGGGTTTGTAG</pcr_primer_p1>
		<pcr_primer_p2>GTGATTGTTAAAATGCCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCACAATTGGGTTTGTAGAAATTGAAACCGCATTTATCTGAAAACGTTTTTTGGGGAAGTTTTTGAAAATTGGAACAAAAAAGTTACAAAAAACAAACGCCCGGTGAGCCAAACATATATAAGTGAAGATAATCTGAACTTTCAGCCAAAAACTGTAAATTTTCAACTTTTCCTATATTAAAAACATATATCTCTAATTACCCGGTAATCAAAAATTTGAATTTTGGCATTTTAACAATCAC</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCACAATTGGGTTTGTAGAAATTGAAACCGCATTTATCTGAAAACGTTTTTTGGGGAAGTTTTTGAAAATTGGAACAAAAAAGTTACAAAAAACAAACGCCCGGTGAGCCAAACATATATAAGTGAAGATAATCTGAAYTTTCAGCCAAAAACTGTAAATTTTCAACTTTTCCTATATTAAAAACATATATCTCTAATTACCCGGTAATCAAAAATTTGAATTTTGGCATTTTAACAATCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35022</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>311618</contig_pos>
        <strand></strand>
        <context>ATCTCTAATT[A/T]CCCGGTAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAACTGTAAATTTTCAACTTTTCCTATATTAAAAACATATATCTCTAATT</left_flank>
        <right_flank>CCCGGTAATCAAAAATTTGAATTTTGGCATTTTAACAATCACAATTTTTT</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGAACAATTAGGTCTGTAATTGTAGCGATACTGTGGACCTGTAATCTAATAAAATTATTTGAAAAATCCGAAGAAAATCGGCGATTCTGAGCGACGATTCTGAAAAATCGAAATGTTCACCGACCATTTGAAACGAAAATAACGGAGAAAACTGATACAAAATATGCCTTCGAAATTTCCTATAATTTTCTAATCGTCCCAAAATTCGATACACAAAAATATAAAATCCATGAGATATAAAAGTGAGAAATATGAAAAATAAATTGTAAAAAATGTCGAGTTCTTGAAATTTAGCGTTTTCACAATTGGGTTTGTAGAAATTGAAACCGCATTTATCTGAAAACGTTTTTTGGGGAAGTTTTTGAAAATTGGAACAAAAAAGTTACAAAAAACAAACGCCCGGTGAGCCAAACATATATAAGTGAAGATAATCTGAACTTTCAGCCAAAAACTGTAAATTTTCAACTTTTCCTATATTAAAAACATATATCTCTAATTACCCGGTAATCAAAAATTTGAATTTTGGCATTTTAACAATCACAATTTTTTGTAAAACTGCTAAAAATGAAAAAGCAGTTATTGAAGAAAAAACAACTTCTAGTAATTGCCCGAAATACGATTCCAGAAGCATCAGAATAACAACAAAAAACATCAAAGTCGTGTCTTCACTGGCTGGATCTCCAATAAAACGTAATAAGATACATAGGTCAAAAACAGCTAAAGTGAATAGTGATATATAAAATAATTGATCAAAAATCATCTTTTCAAATTCAATGAAATTTTCATTTTTTGTTTTTCCAGCCAGTTTTGAAATTCTATAAAAAATGAGAAGAGCAAAAAGCGTATTGCTCAGAATTGCGGTTATTATTGAATACTCTTCGTATAATAATAATTCTGTATTAGAGATTTTCAATTTTTTTCCAGAAAAAAAGTTAGGTTGAGACTTTCAACTTGATAAAAACAGCGCACAGGTGAAAAATTTAATGCTTGATTTTATAT</canonical>
            <polymorphic>ACGAACAATTAGGTCTGTAATTGTAGCGATACTGTGGACCTGTAATCTAATAAAATTATTTGAAAAATCCGAAGAAAATCGGCGATTCTGAGCGACGATTCTGAAAAATCGAAATGTTCACCGACCATTTGAAACGAAAATAACGGAGAAAACTGATACAAAATATGCCTTCGAAATTTCCTATAATTTTCTAATCGTCCCAAAATTCGATACACAAAAATATAAAATCCATGAGATATAAAAGTGAGAAATATGAAAAATAAATTGTAAAAAATGTCGAGTTCTTGAAATTTAGCGTTTTCACAATTGGGTTTGTAGAAATTGAAACCGCATTTATCTGAAAACGTTTTTTGGGGAAGTTTTTGAAAATTGGAACAAAAAAGTTACAAAAAACAAACGCCCGGTGAGCCAAACATATATAAGTGAAGATAATCTGAACTTTCAGCCAAAAACTGTAAATTTTCAACTTTTCCTATATTAAAAACATATATCTCTAATTWCCCGGTAATCAAAAATTTGAATTTTGGCATTTTAACAATCACAATTTTTTGTAAAACTGCTAAAAATGAAAAAGCAGTTATTGAAGAAAAAACAACTTCTAGTAATTGCCCGAAATACGATTCCAGAAGCATCAGAATAACAACAAAAAACATCAAAGTCGTGTCTTCACTGGCTGGATCTCCAATAAAACGTAATAAGATACATAGGTCAAAAACAGCTAAAGTGAATAGTGATATATAAAATAATTGATCAAAAATCATCTTTTCAAATTCAATGAAATTTTCATTTTTTGTTTTTCCAGCCAGTTTTGAAATTCTATAAAAAATGAGAAGAGCAAAAAGCGTATTGCTCAGAATTGCGGTTATTATTGAATACTCTTCGTATAATAATAATTCTGTATTAGAGATTTTCAATTTTTTTCCAGAAAAAAAGTTAGGTTGAGACTTTCAACTTGATAAAAACAGCGCACAGGTGAAAAATTTAATGCTTGATTTTATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGAAACCGCATTTATCTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCATTTTTAGCAGTTTTACA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ATTGAAACCGCATTTATCTGAAAACGTTTTTTGGGGAAGTTTTTGAAAATTGGAACAAAAAAGTTACAAAAAACAAACGCCCGGTGAGCCAAACATATATAAGTGAAGATAATCTGAACTTTCAGCCAAAAACTGTAAATTTTCAACTTTTCCTATATTAAAAACATATATCTCTAATTACCCGGTAATCAAAAATTTGAATTTTGGCATTTTAACAATCACAATTTTTTGTAAAACTGCTAAAAATGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTGAAACCGCATTTATCTGAAAACGTTTTTTGGGGAAGTTTTTGAAAATTGGAACAAAAAAGTTACAAAAAACAAACGCCCGGTGAGCCAAACATATATAAGTGAAGATAATCTGAACTTTCAGCCAAAAACTGTAAATTTTCAACTTTTCCTATATTAAAAACATATATCTCTAATTWCCCGGTAATCAAAAATTTGAATTTTGGCATTTTAACAATCACAATTTTTTGTAAAACTGCTAAAAATGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35035</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>335682</contig_pos>
        <strand></strand>
        <context>ATTATCTTCC[G/A]GAAATTTCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAGTTGATCAAATTTTAATTTCCTTGCTGAATATTTTCAATTATCTTCC</left_flank>
        <right_flank>GAAATTTCTTTGCCATTTTTATTAGTTTGTGAGAATTTAAGACAATGGAA</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTATAATTTATACGAATAAAATTATACGAGTTTATACAACGGCATCGGGTTTTATTGATTACGGTATGGAAGATGGATACAGACAGGTAGGAAAAAACGGAAATTCAGGAATCCAAAAATTCAAAAATGAAAATCTGAAAATTCAAAATTTCCATTTTTTATATTTTTCAGATTATAAACCGTATATTCTATTTATTCCCGTTTGCTGCTGTTCTCTGTTATGTAATTCTGTTCTGGTATTTACGCCGAAAAAATCGAAAAAATTCAATTTTTGAAAATCCCCGGAATCCAAAAAATCGAGGCGACCAAAAAGTGGTTGTCCAGTTATTATTTACCTCTCTTTTTTATACGGTATTTTTTTTCTAATTCTGAAAATTTCCAGAAAATTGAAATTTTAGATAATGTCAATTCTAGTCGAGCTTATGGAATTTGTATACTTTTCTCCGAAAGTTGATCAAATTTTAATTTCCTTGCTGAATATTTTCAATTATCTTCCGGAAATTTCTTTGCCATTTTTATTAGTTTGTGAGAATTTAAGACAATGGAAAAGGGTAAATGTGCTGAACATACCCAGCCAAAGTTTGAATCAAAATTCTGGAAGGGGTAATTGAACAATTATCATTGATTATTATCGATTTTTTTCTCATTGAAATAAAATTCTGAAATTTTTTATAGTTGATTGAAAAAAATTGCCAAGGTGTTAATTGAAATTATTTATCAAATTAAAATTCCAAAAAAAATAAGATTTAAAAATAATTAAAAATAAATATTGCAAAACAAAATATCCTCTGGAAACACCAATTTCACATCTTGTCTCCCATTTTTGAAGCATGGAAATCCAGTTCTCAAAACAACAAAATTTTGTCGAGTAATCAAAAGAGAAATGCTGTTGAATGGATCATTTCGTTTTGAGAATTGCCAGAATTTCCCGTAATATCCGAATTTTTCGAAGTGTGAGAAAAATTCTCGGTAGAGAGGGCTGAAAAAAAGTTATTTT</canonical>
            <polymorphic>AAATTATAATTTATACGAATAAAATTATACGAGTTTATACAACGGCATCGGGTTTTATTGATTACGGTATGGAAGATGGATACAGACAGGTAGGAAAAAACGGAAATTCAGGAATCCAAAAATTCAAAAATGAAAATCTGAAAATTCAAAATTTCCATTTTTTATATTTTTCAGATTATAAACCGTATATTCTATTTATTCCCGTTTGCTGCTGTTCTCTGTTATGTAATTCTGTTCTGGTATTTACGCCGAAAAAATCGAAAAAATTCAATTTTTGAAAATCCCCGGAATCCAAAAAATCGAGGCGACCAAAAAGTGGTTGTCCAGTTATTATTTACCTCTCTTTTTTATACGGTATTTTTTTTCTAATTCTGAAAATTTCCAGAAAATTGAAATTTTAGATAATGTCAATTCTAGTCGAGCTTATGGAATTTGTATACTTTTCTCCGAAAGTTGATCAAATTTTAATTTCCTTGCTGAATATTTTCAATTATCTTCCRGAAATTTCTTTGCCATTTTTATTAGTTTGTGAGAATTTAAGACAATGGAAAAGGGTAAATGTGCTGAACATACCCAGCCAAAGTTTGAATCAAAATTCTGGAAGGGGTAATTGAACAATTATCATTGATTATTATCGATTTTTTTCTCATTGAAATAAAATTCTGAAATTTTTTATAGTTGATTGAAAAAAATTGCCAAGGTGTTAATTGAAATTATTTATCAAATTAAAATTCCAAAAAAAATAAGATTTAAAAATAATTAAAAATAAATATTGCAAAACAAAATATCCTCTGGAAACACCAATTTCACATCTTGTCTCCCATTTTTGAAGCATGGAAATCCAGTTCTCAAAACAACAAAATTTTGTCGAGTAATCAAAAGAGAAATGCTGTTGAATGGATCATTTCGTTTTGAGAATTGCCAGAATTTCCCGTAATATCCGAATTTTTCGAAGTGTGAGAAAAATTCTCGGTAGAGAGGGCTGAAAAAAAGTTATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCCGGA</site>
                <isoschizomers>
                    <enzyme>AccIII</enzyme>
                    <enzyme>BseAI</enzyme>
                    <enzyme>BsiMI</enzyme>
                    <enzyme>Bsp13I</enzyme>
                    <enzyme>BspEI</enzyme>
                    <enzyme>BspMII</enzyme>
                    <enzyme>Kpn2I</enzyme>
                    <enzyme>MroI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 285 213</canonical_bands>
                <polymorphic_bands>715 285</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGTGGTTGTCCAGTTATTATT</pcr_primer_p1>
		<pcr_primer_p2>ATTTACCCTTTTCCATTGTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAGTGGTTGTCCAGTTATTATTTACCTCTCTTTTTTATACGGTATTTTTTTTCTAATTCTGAAAATTTCCAGAAAATTGAAATTTTAGATAATGTCAATTCTAGTCGAGCTTATGGAATTTGTATACTTTTCTCCGAAAGTTGATCAAATTTTAATTTCCTTGCTGAATATTTTCAATTATCTTCCGGAAATTTCTTTGCCATTTTTATTAGTTTGTGAGAATTTAAGACAATGGAAAAGGGTAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGTGGTTGTCCAGTTATTATTTACCTCTCTTTTTTATACGGTATTTTTTTTCTAATTCTGAAAATTTCCAGAAAATTGAAATTTTAGATAATGTCAATTCTAGTCGAGCTTATGGAATTTGTATACTTTTCTCCGAAAGTTGATCAAATTTTAATTTCCTTGCTGAATATTTTCAATTATCTTCCRGAAATTTCTTTGCCATTTTTATTAGTTTGTGAGAATTTAAGACAATGGAAAAGGGTAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35036</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>335786</contig_pos>
        <strand></strand>
        <context>AATTCTGGAA[G/A]GGGTAATTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGTAAATGTGCTGAACATACCCAGCCAAAGTTTGAATCAAAATTCTGGAA</left_flank>
        <right_flank>GGGTAATTGAACAATTATCATTGATTATTATCGATTTTTTTCTCATTGAA</right_flank>
        <qual_score>35</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCAGGAATCCAAAAATTCAAAAATGAAAATCTGAAAATTCAAAATTTCCATTTTTTATATTTTTCAGATTATAAACCGTATATTCTATTTATTCCCGTTTGCTGCTGTTCTCTGTTATGTAATTCTGTTCTGGTATTTACGCCGAAAAAATCGAAAAAATTCAATTTTTGAAAATCCCCGGAATCCAAAAAATCGAGGCGACCAAAAAGTGGTTGTCCAGTTATTATTTACCTCTCTTTTTTATACGGTATTTTTTTTCTAATTCTGAAAATTTCCAGAAAATTGAAATTTTAGATAATGTCAATTCTAGTCGAGCTTATGGAATTTGTATACTTTTCTCCGAAAGTTGATCAAATTTTAATTTCCTTGCTGAATATTTTCAATTATCTTCCGGAAATTTCTTTGCCATTTTTATTAGTTTGTGAGAATTTAAGACAATGGAAAAGGGTAAATGTGCTGAACATACCCAGCCAAAGTTTGAATCAAAATTCTGGAAGGGGTAATTGAACAATTATCATTGATTATTATCGATTTTTTTCTCATTGAAATAAAATTCTGAAATTTTTTATAGTTGATTGAAAAAAATTGCCAAGGTGTTAATTGAAATTATTTATCAAATTAAAATTCCAAAAAAAATAAGATTTAAAAATAATTAAAAATAAATATTGCAAAACAAAATATCCTCTGGAAACACCAATTTCACATCTTGTCTCCCATTTTTGAAGCATGGAAATCCAGTTCTCAAAACAACAAAATTTTGTCGAGTAATCAAAAGAGAAATGCTGTTGAATGGATCATTTCGTTTTGAGAATTGCCAGAATTTCCCGTAATATCCGAATTTTTCGAAGTGTGAGAAAAATTCTCGGTAGAGAGGGCTGAAAAAAAGTTATTTTTGATTTTGGCAATTTTTTGAATTCTCGAATTTCTGAAATTTTGATAATTCTGATTCGCCGAATTTCTCGAATTTCCGGAAGTTTGAATACTTTCAGTTTTTTTT</canonical>
            <polymorphic>AATTCAGGAATCCAAAAATTCAAAAATGAAAATCTGAAAATTCAAAATTTCCATTTTTTATATTTTTCAGATTATAAACCGTATATTCTATTTATTCCCGTTTGCTGCTGTTCTCTGTTATGTAATTCTGTTCTGGTATTTACGCCGAAAAAATCGAAAAAATTCAATTTTTGAAAATCCCCGGAATCCAAAAAATCGAGGCGACCAAAAAGTGGTTGTCCAGTTATTATTTACCTCTCTTTTTTATACGGTATTTTTTTTCTAATTCTGAAAATTTCCAGAAAATTGAAATTTTAGATAATGTCAATTCTAGTCGAGCTTATGGAATTTGTATACTTTTCTCCGAAAGTTGATCAAATTTTAATTTCCTTGCTGAATATTTTCAATTATCTTCCGGAAATTTCTTTGCCATTTTTATTAGTTTGTGAGAATTTAAGACAATGGAAAAGGGTAAATGTGCTGAACATACCCAGCCAAAGTTTGAATCAAAATTCTGGAARGGGTAATTGAACAATTATCATTGATTATTATCGATTTTTTTCTCATTGAAATAAAATTCTGAAATTTTTTATAGTTGATTGAAAAAAATTGCCAAGGTGTTAATTGAAATTATTTATCAAATTAAAATTCCAAAAAAAATAAGATTTAAAAATAATTAAAAATAAATATTGCAAAACAAAATATCCTCTGGAAACACCAATTTCACATCTTGTCTCCCATTTTTGAAGCATGGAAATCCAGTTCTCAAAACAACAAAATTTTGTCGAGTAATCAAAAGAGAAATGCTGTTGAATGGATCATTTCGTTTTGAGAATTGCCAGAATTTCCCGTAATATCCGAATTTTTCGAAGTGTGAGAAAAATTCTCGGTAGAGAGGGCTGAAAAAAAGTTATTTTTGATTTTGGCAATTTTTTGAATTCTCGAATTTCTGAAATTTTGATAATTCTGATTCGCCGAATTTCTCGAATTTCCGGAAGTTTGAATACTTTCAGTTTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGGTAAATGTGCTGAACATAC</pcr_primer_p1>
		<pcr_primer_p2>GTTTCCAGAGGATATTTTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGGGTAAATGTGCTGAACATACCCAGCCAAAGTTTGAATCAAAATTCTGGAAGGGGTAATTGAACAATTATCATTGATTATTATCGATTTTTTTCTCATTGAAATAAAATTCTGAAATTTTTTATAGTTGATTGAAAAAAATTGCCAAGGTGTTAATTGAAATTATTTATCAAATTAAAATTCCAAAAAAAATAAGATTTAAAAATAATTAAAAATAAATATTGCAAAACAAAATATCCTCTGGAAAC</canonical_amplicon>
		<polymorphic_amplicon>AGGGTAAATGTGCTGAACATACCCAGCCAAAGTTTGAATCAAAATTCTGGAARGGGTAATTGAACAATTATCATTGATTATTATCGATTTTTTTCTCATTGAAATAAAATTCTGAAATTTTTTATAGTTGATTGAAAAAAATTGCCAAGGTGTTAATTGAAATTATTTATCAAATTAAAATTCCAAAAAAAATAAGATTTAAAAATAATTAAAAATAAATATTGCAAAACAAAATATCCTCTGGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35037</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>341405</contig_pos>
        <strand></strand>
        <context>GTTtttccat[C/T]tgggtgggtg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCACCGCTGGTTTGTCTGAAAATTTTTATTTTCTTTGACAGTTTTTCCAT</left_flank>
        <right_flank>TGGGTGGGTGAAGAAGCGGGCTACCCGCTACCCGTCTGGACGGCTCCCAC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCTACCCAAAATATCTGAAAAATTTCGGAAAACCTTTCAACAAAATTTAGAAGGGCTTAATCGGAAAATTCTAAAACAAAACAAAACATTTTGAAGTCCTCGAAATTCTTAAGTTTTAAAGGTTCAAAAAATTCTAAAAGTTCAAAAAATTCTAAAAGTTCTAAAAATTCTAAATAACTTGGCTATATAAGCCAGATAAATTATTTTAAAGACTTTAAATTCGATTTTTATCGAAATTTCTGAAATTCAAATTTACCACAACTGAAACCATCAAACTTCGGTGCCCAATCTGATAATCCAAGTGATTTTCTGATCTCATAGCAATAAGTGGAATTAAGTGTAAAAATTGGGTTAACATTCTCGAATTCCATAGTATATGAAGAATCCGATTTGACTCTTTTCAACTTTGGAAATGTTACATTCATTAAGTTCGGGATGTTTTCGATTACCACCGCTGGTTTGTCTGAAAATTTTTATTTTCTTTGACAGTTTTTCCATCTGGGTGGGTGAAGAAGCGGGCTACCCGCTACCCGTCTGGACGGCTCCCACCCGCGGCCCCGCAGGGGCTCCCGCAATCATGTACGTGTGAATTTTGAATCGCCCTCTAAATGGAAACCCTATTCTGTAAAACGGTTTTCAGTGTTCAAAAAATAAAGCTTACGCTCCAATTGTGCCACATATTTCAGATTTTCCAGAAAACTGAAATCCGTGATATTCGTCCCAGAAATAGTGATTCCTCCGAAAATCGCCTCCACTGATTTCATATTTTCTAAATCACAATTCGTTGTGATTTTGACGTCTCCAAGGATCCAAATACAATTTTTTGAGAGTTTAGTGCAAATCGTGTCCATTTTACAATAACTATCCGCATAAATTTGATCTACTCCGGCTGTTGGAATTTCCAAAAAATTGTACATTTCTAGGGGAGAAATGCAAAAAGAGTTAGAGTTATCGGCGATTCCTACATACACTTCTTTGTTTGGTTTTGTCGGATTTTTC</canonical>
            <polymorphic>GCCTACCCAAAATATCTGAAAAATTTCGGAAAACCTTTCAACAAAATTTAGAAGGGCTTAATCGGAAAATTCTAAAACAAAACAAAACATTTTGAAGTCCTCGAAATTCTTAAGTTTTAAAGGTTCAAAAAATTCTAAAAGTTCAAAAAATTCTAAAAGTTCTAAAAATTCTAAATAACTTGGCTATATAAGCCAGATAAATTATTTTAAAGACTTTAAATTCGATTTTTATCGAAATTTCTGAAATTCAAATTTACCACAACTGAAACCATCAAACTTCGGTGCCCAATCTGATAATCCAAGTGATTTTCTGATCTCATAGCAATAAGTGGAATTAAGTGTAAAAATTGGGTTAACATTCTCGAATTCCATAGTATATGAAGAATCCGATTTGACTCTTTTCAACTTTGGAAATGTTACATTCATTAAGTTCGGGATGTTTTCGATTACCACCGCTGGTTTGTCTGAAAATTTTTATTTTCTTTGACAGTTTTTCCATYTGGGTGGGTGAAGAAGCGGGCTACCCGCTACCCGTCTGGACGGCTCCCACCCGCGGCCCCGCAGGGGCTCCCGCAATCATGTACGTGTGAATTTTGAATCGCCCTCTAAATGGAAACCCTATTCTGTAAAACGGTTTTCAGTGTTCAAAAAATAAAGCTTACGCTCCAATTGTGCCACATATTTCAGATTTTCCAGAAAACTGAAATCCGTGATATTCGTCCCAGAAATAGTGATTCCTCCGAAAATCGCCTCCACTGATTTCATATTTTCTAAATCACAATTCGTTGTGATTTTGACGTCTCCAAGGATCCAAATACAATTTTTTGAGAGTTTAGTGCAAATCGTGTCCATTTTACAATAACTATCCGCATAAATTTGATCTACTCCGGCTGTTGGAATTTCCAAAAAATTGTACATTTCTAGGGGAGAAATGCAAAAAGAGTTAGAGTTATCGGCGATTCCTACATACACTTCTTTGTTTGGTTTTGTCGGATTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATATGAAGAATCCGATTTGACT</pcr_primer_p1>
		<pcr_primer_p2>GAATAGGGTTTCCATTTAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATATGAAGAATCCGATTTGACTCTTTTCAACTTTGGAAATGTTACATTCATTAAGTTCGGGATGTTTTCGATTACCACCGCTGGTTTGTCTGAAAATTTTTATTTTCTTTGACAGTTTTTCCATCTGGGTGGGTGAAGAAGCGGGCTACCCGCTACCCGTCTGGACGGCTCCCACCCGCGGCCCCGCAGGGGCTCCCGCAATCATGTACGTGTGAATTTTGAATCGCCCTCTAAATGGAAACCCTATTC</canonical_amplicon>
		<polymorphic_amplicon>TATATGAAGAATCCGATTTGACTCTTTTCAACTTTGGAAATGTTACATTCATTAAGTTCGGGATGTTTTCGATTACCACCGCTGGTTTGTCTGAAAATTTTTATTTTCTTTGACAGTTTTTCCATYTGGGTGGGTGAAGAAGCGGGCTACCCGCTACCCGTCTGGACGGCTCCCACCCGCGGCCCCGCAGGGGCTCCCGCAATCATGTACGTGTGAATTTTGAATCGCCCTCTAAATGGAAACCCTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35038</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>341448</contig_pos>
        <strand></strand>
        <context>cgtctggacg[G/T]ctcccrcccg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCCATCTGGGTGGGTGAAGAAGCGGGCTACCCGCTACCCGTCTGGACG</left_flank>
        <right_flank>CTCCCACCCGCGGCCCCGCAGGGGCTCCCGCAATCATGTACGTGTGAATT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTAGAAGGGCTTAATCGGAAAATTCTAAAACAAAACAAAACATTTTGAAGTCCTCGAAATTCTTAAGTTTTAAAGGTTCAAAAAATTCTAAAAGTTCAAAAAATTCTAAAAGTTCTAAAAATTCTAAATAACTTGGCTATATAAGCCAGATAAATTATTTTAAAGACTTTAAATTCGATTTTTATCGAAATTTCTGAAATTCAAATTTACCACAACTGAAACCATCAAACTTCGGTGCCCAATCTGATAATCCAAGTGATTTTCTGATCTCATAGCAATAAGTGGAATTAAGTGTAAAAATTGGGTTAACATTCTCGAATTCCATAGTATATGAAGAATCCGATTTGACTCTTTTCAACTTTGGAAATGTTACATTCATTAAGTTCGGGATGTTTTCGATTACCACCGCTGGTTTGTCTGAAAATTTTTATTTTCTTTGACAGTTTTTCCATCTGGGTGGGTGAAGAAGCGGGCTACCCGCTACCCGTCTGGACGGCTCCCACCCGCGGCCCCGCAGGGGCTCCCGCAATCATGTACGTGTGAATTTTGAATCGCCCTCTAAATGGAAACCCTATTCTGTAAAACGGTTTTCAGTGTTCAAAAAATAAAGCTTACGCTCCAATTGTGCCACATATTTCAGATTTTCCAGAAAACTGAAATCCGTGATATTCGTCCCAGAAATAGTGATTCCTCCGAAAATCGCCTCCACTGATTTCATATTTTCTAAATCACAATTCGTTGTGATTTTGACGTCTCCAAGGATCCAAATACAATTTTTTGAGAGTTTAGTGCAAATCGTGTCCATTTTACAATAACTATCCGCATAAATTTGATCTACTCCGGCTGTTGGAATTTCCAAAAAATTGTACATTTCTAGGGGAGAAATGCAAAAAGAGTTAGAGTTATCGGCGATTCCTACATACACTTCTTTGTTTGGTTTTGTCGGATTTTTCATTTTCTGAAAATATGAGATTTCACTTTCGAAAAGTTGAATTT</canonical>
            <polymorphic>AAATTTAGAAGGGCTTAATCGGAAAATTCTAAAACAAAACAAAACATTTTGAAGTCCTCGAAATTCTTAAGTTTTAAAGGTTCAAAAAATTCTAAAAGTTCAAAAAATTCTAAAAGTTCTAAAAATTCTAAATAACTTGGCTATATAAGCCAGATAAATTATTTTAAAGACTTTAAATTCGATTTTTATCGAAATTTCTGAAATTCAAATTTACCACAACTGAAACCATCAAACTTCGGTGCCCAATCTGATAATCCAAGTGATTTTCTGATCTCATAGCAATAAGTGGAATTAAGTGTAAAAATTGGGTTAACATTCTCGAATTCCATAGTATATGAAGAATCCGATTTGACTCTTTTCAACTTTGGAAATGTTACATTCATTAAGTTCGGGATGTTTTCGATTACCACCGCTGGTTTGTCTGAAAATTTTTATTTTCTTTGACAGTTTTTCCATCTGGGTGGGTGAAGAAGCGGGCTACCCGCTACCCGTCTGGACGKCTCCCACCCGCGGCCCCGCAGGGGCTCCCGCAATCATGTACGTGTGAATTTTGAATCGCCCTCTAAATGGAAACCCTATTCTGTAAAACGGTTTTCAGTGTTCAAAAAATAAAGCTTACGCTCCAATTGTGCCACATATTTCAGATTTTCCAGAAAACTGAAATCCGTGATATTCGTCCCAGAAATAGTGATTCCTCCGAAAATCGCCTCCACTGATTTCATATTTTCTAAATCACAATTCGTTGTGATTTTGACGTCTCCAAGGATCCAAATACAATTTTTTGAGAGTTTAGTGCAAATCGTGTCCATTTTACAATAACTATCCGCATAAATTTGATCTACTCCGGCTGTTGGAATTTCCAAAAAATTGTACATTTCTAGGGGAGAAATGCAAAAAGAGTTAGAGTTATCGGCGATTCCTACATACACTTCTTTGTTTGGTTTTGTCGGATTTTTCATTTTCTGAAAATATGAGATTTCACTTTCGAAAAGTTGAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>261 241 240 234 13 11</canonical_bands>
                <polymorphic_bands>274 241 240 234 11</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>328 233 153 127 90 23 13 13 11 9</canonical_bands>
                <polymorphic_bands>328 233 153 127 90 36 13 11 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATATGAAGAATCCGATTTGACT</pcr_primer_p1>
		<pcr_primer_p2>GAATAGGGTTTCCATTTAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATATGAAGAATCCGATTTGACTCTTTTCAACTTTGGAAATGTTACATTCATTAAGTTCGGGATGTTTTCGATTACCACCGCTGGTTTGTCTGAAAATTTTTATTTTCTTTGACAGTTTTTCCATCTGGGTGGGTGAAGAAGCGGGCTACCCGCTACCCGTCTGGACGGCTCCCACCCGCGGCCCCGCAGGGGCTCCCGCAATCATGTACGTGTGAATTTTGAATCGCCCTCTAAATGGAAACCCTATTC</canonical_amplicon>
		<polymorphic_amplicon>TATATGAAGAATCCGATTTGACTCTTTTCAACTTTGGAAATGTTACATTCATTAAGTTCGGGATGTTTTCGATTACCACCGCTGGTTTGTCTGAAAATTTTTATTTTCTTTGACAGTTTTTCCATCTGGGTGGGTGAAGAAGCGGGCTACCCGCTACCCGTCTGGACGKCTCCCACCCGCGGCCCCGCAGGGGCTCCCGCAATCATGTACGTGTGAATTTTGAATCGCCCTCTAAATGGAAACCCTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35039</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>341454</contig_pos>
        <strand></strand>
        <context>gacgkctccc[A/G]cccgcggccc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGGGTGGGTGAAGAAGCGGGCTACCCGCTACCCGTCTGGACGGCTCCC</left_flank>
        <right_flank>CCCGCGGCCCCGCAGGGGCTCCCGCAATCATGTACGTGTGAATTTTGAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAGGGCTTAATCGGAAAATTCTAAAACAAAACAAAACATTTTGAAGTCCTCGAAATTCTTAAGTTTTAAAGGTTCAAAAAATTCTAAAAGTTCAAAAAATTCTAAAAGTTCTAAAAATTCTAAATAACTTGGCTATATAAGCCAGATAAATTATTTTAAAGACTTTAAATTCGATTTTTATCGAAATTTCTGAAATTCAAATTTACCACAACTGAAACCATCAAACTTCGGTGCCCAATCTGATAATCCAAGTGATTTTCTGATCTCATAGCAATAAGTGGAATTAAGTGTAAAAATTGGGTTAACATTCTCGAATTCCATAGTATATGAAGAATCCGATTTGACTCTTTTCAACTTTGGAAATGTTACATTCATTAAGTTCGGGATGTTTTCGATTACCACCGCTGGTTTGTCTGAAAATTTTTATTTTCTTTGACAGTTTTTCCATCTGGGTGGGTGAAGAAGCGGGCTACCCGCTACCCGTCTGGACGGCTCCCACCCGCGGCCCCGCAGGGGCTCCCGCAATCATGTACGTGTGAATTTTGAATCGCCCTCTAAATGGAAACCCTATTCTGTAAAACGGTTTTCAGTGTTCAAAAAATAAAGCTTACGCTCCAATTGTGCCACATATTTCAGATTTTCCAGAAAACTGAAATCCGTGATATTCGTCCCAGAAATAGTGATTCCTCCGAAAATCGCCTCCACTGATTTCATATTTTCTAAATCACAATTCGTTGTGATTTTGACGTCTCCAAGGATCCAAATACAATTTTTTGAGAGTTTAGTGCAAATCGTGTCCATTTTACAATAACTATCCGCATAAATTTGATCTACTCCGGCTGTTGGAATTTCCAAAAAATTGTACATTTCTAGGGGAGAAATGCAAAAAGAGTTAGAGTTATCGGCGATTCCTACATACACTTCTTTGTTTGGTTTTGTCGGATTTTTCATTTTCTGAAAATATGAGATTTCACTTTCGAAAAGTTGAATTTCTGAAT</canonical>
            <polymorphic>AGAAGGGCTTAATCGGAAAATTCTAAAACAAAACAAAACATTTTGAAGTCCTCGAAATTCTTAAGTTTTAAAGGTTCAAAAAATTCTAAAAGTTCAAAAAATTCTAAAAGTTCTAAAAATTCTAAATAACTTGGCTATATAAGCCAGATAAATTATTTTAAAGACTTTAAATTCGATTTTTATCGAAATTTCTGAAATTCAAATTTACCACAACTGAAACCATCAAACTTCGGTGCCCAATCTGATAATCCAAGTGATTTTCTGATCTCATAGCAATAAGTGGAATTAAGTGTAAAAATTGGGTTAACATTCTCGAATTCCATAGTATATGAAGAATCCGATTTGACTCTTTTCAACTTTGGAAATGTTACATTCATTAAGTTCGGGATGTTTTCGATTACCACCGCTGGTTTGTCTGAAAATTTTTATTTTCTTTGACAGTTTTTCCATCTGGGTGGGTGAAGAAGCGGGCTACCCGCTACCCGTCTGGACGGCTCCCRCCCGCGGCCCCGCAGGGGCTCCCGCAATCATGTACGTGTGAATTTTGAATCGCCCTCTAAATGGAAACCCTATTCTGTAAAACGGTTTTCAGTGTTCAAAAAATAAAGCTTACGCTCCAATTGTGCCACATATTTCAGATTTTCCAGAAAACTGAAATCCGTGATATTCGTCCCAGAAATAGTGATTCCTCCGAAAATCGCCTCCACTGATTTCATATTTTCTAAATCACAATTCGTTGTGATTTTGACGTCTCCAAGGATCCAAATACAATTTTTTGAGAGTTTAGTGCAAATCGTGTCCATTTTACAATAACTATCCGCATAAATTTGATCTACTCCGGCTGTTGGAATTTCCAAAAAATTGTACATTTCTAGGGGAGAAATGCAAAAAGAGTTAGAGTTATCGGCGATTCCTACATACACTTCTTTGTTTGGTTTTGTCGGATTTTTCATTTTCTGAAAATATGAGATTTCACTTTCGAAAAGTTGAATTTCTGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>210 124 111 54 54 53 48 39 38 35 31 26 25 25 23 22 21 21 12 10 9 4 3 2</canonical_bands>
                <polymorphic_bands>210 124 111 77 54 54 53 48 35 31 26 25 25 23 22 21 21 12 10 9 4 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATATGAAGAATCCGATTTGACT</pcr_primer_p1>
		<pcr_primer_p2>GAATAGGGTTTCCATTTAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATATGAAGAATCCGATTTGACTCTTTTCAACTTTGGAAATGTTACATTCATTAAGTTCGGGATGTTTTCGATTACCACCGCTGGTTTGTCTGAAAATTTTTATTTTCTTTGACAGTTTTTCCATCTGGGTGGGTGAAGAAGCGGGCTACCCGCTACCCGTCTGGACGGCTCCCACCCGCGGCCCCGCAGGGGCTCCCGCAATCATGTACGTGTGAATTTTGAATCGCCCTCTAAATGGAAACCCTATTC</canonical_amplicon>
		<polymorphic_amplicon>TATATGAAGAATCCGATTTGACTCTTTTCAACTTTGGAAATGTTACATTCATTAAGTTCGGGATGTTTTCGATTACCACCGCTGGTTTGTCTGAAAATTTTTATTTTCTTTGACAGTTTTTCCATCTGGGTGGGTGAAGAAGCGGGCTACCCGCTACCCGTCTGGACGGCTCCCRCCCGCGGCCCCGCAGGGGCTCCCGCAATCATGTACGTGTGAATTTTGAATCGCCCTCTAAATGGAAACCCTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35040</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>341666</contig_pos>
        <strand>+</strand>
        <context>CTCCACTGAT[A/T]TCATATTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGATATTCGTCCCAGAAATAGTGATTCCTCCGAAAATCGCCTCCACTGAT</left_flank>
        <right_flank>TCATATTTTCTAAATCACAATTCGTTGTGATTTTGACGTCTCCAAGGATC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGAAACCATCAAACTTCGGTGCCCAATCTGATAATCCAAGTGATTTTCTGATCTCATAGCAATAAGTGGAATTAAGTGTAAAAATTGGGTTAACATTCTCGAATTCCATAGTATATGAAGAATCCGATTTGACTCTTTTCAACTTTGGAAATGTTACATTCATTAAGTTCGGGATGTTTTCGATTACCACCGCTGGTTTGTCTGAAAATTTTTATTTTCTTTGACAGTTTTTCCATCTGGGTGGGTGAAGAAGCGGGCTACCCGCTACCCGTCTGGACGGCTCCCACCCGCGGCCCCGCAGGGGCTCCCGCAATCATGTACGTGTGAATTTTGAATCGCCCTCTAAATGGAAACCCTATTCTGTAAAACGGTTTTCAGTGTTCAAAAAATAAAGCTTACGCTCCAATTGTGCCACATATTTCAGATTTTCCAGAAAACTGAAATCCGTGATATTCGTCCCAGAAATAGTGATTCCTCCGAAAATCGCCTCCACTGATTTCATATTTTCTAAATCACAATTCGTTGTGATTTTGACGTCTCCAAGGATCCAAATACAATTTTTTGAGAGTTTAGTGCAAATCGTGTCCATTTTACAATAACTATCCGCATAAATTTGATCTACTCCGGCTGTTGGAATTTCCAAAAAATTGTACATTTCTAGGGGAGAAATGCAAAAAGAGTTAGAGTTATCGGCGATTCCTACATACACTTCTTTGTTTGGTTTTGTCGGATTTTTCATTTTCTGAAAATATGAGATTTCACTTTCGAAAAGTTGAATTTCTGAATTTCCGATATTATAAATTGATTTGTTCCCTCCTTACCTTAATATCTGGCATATTGAGAATTTTAAGTTTTTCGTTAACTTTTACAGAAAATCCATCACAATTAACTTCTGTTAAACTGCCCAATCCAAGTTCTGTCATTTCATAATTCAACAAAATTGAAACTTCAGAATCATCAAAACATTCCACAGCTTCCAATCCTTCCAAAAATTTCAA</canonical>
            <polymorphic>ACTGAAACCATCAAACTTCGGTGCCCAATCTGATAATCCAAGTGATTTTCTGATCTCATAGCAATAAGTGGAATTAAGTGTAAAAATTGGGTTAACATTCTCGAATTCCATAGTATATGAAGAATCCGATTTGACTCTTTTCAACTTTGGAAATGTTACATTCATTAAGTTCGGGATGTTTTCGATTACCACCGCTGGTTTGTCTGAAAATTTTTATTTTCTTTGACAGTTTTTCCATCTGGGTGGGTGAAGAAGCGGGCTACCCGCTACCCGTCTGGACGGCTCCCACCCGCGGCCCCGCAGGGGCTCCCGCAATCATGTACGTGTGAATTTTGAATCGCCCTCTAAATGGAAACCCTATTCTGTAAAACGGTTTTCAGTGTTCAAAAAATAAAGCTTACGCTCCAATTGTGCCACATATTTCAGATTTTCCAGAAAACTGAAATCCGTGATATTCGTCCCAGAAATAGTGATTCCTCCGAAAATCGCCTCCACTGATWTCATATTTTCTAAATCACAATTCGTTGTGATTTTGACGTCTCCAAGGATCCAAATACAATTTTTTGAGAGTTTAGTGCAAATCGTGTCCATTTTACAATAACTATCCGCATAAATTTGATCTACTCCGGCTGTTGGAATTTCCAAAAAATTGTACATTTCTAGGGGAGAAATGCAAAAAGAGTTAGAGTTATCGGCGATTCCTACATACACTTCTTTGTTTGGTTTTGTCGGATTTTTCATTTTCTGAAAATATGAGATTTCACTTTCGAAAAGTTGAATTTCTGAATTTCCGATATTATAAATTGATTTGTTCCCTCCTTACCTTAATATCTGGCATATTGAGAATTTTAAGTTTTTCGTTAACTTTTACAGAAAATCCATCACAATTAACTTCTGTTAAACTGCCCAATCCAAGTTCTGTCATTTCATAATTCAACAAAATTGAAACTTCAGAATCATCAAAACATTCCACAGCTTCCAATCCTTCCAAAAATTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTAAATGGAAACCCTATTCTG</pcr_primer_p1>
		<pcr_primer_p2>GATTTGCACTAAACTCTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CTCTAAATGGAAACCCTATTCTGTAAAACGGTTTTCAGTGTTCAAAAAATAAAGCTTACGCTCCAATTGTGCCACATATTTCAGATTTTCCAGAAAACTGAAATCCGTGATATTCGTCCCAGAAATAGTGATTCCTCCGAAAATCGCCTCCACTGATTTCATATTTTCTAAATCACAATTCGTTGTGATTTTGACGTCTCCAAGGATCCAAATACAATTTTTTGAGAGTTTAGTGCAAATC</canonical_amplicon>
		<polymorphic_amplicon>CTCTAAATGGAAACCCTATTCTGTAAAACGGTTTTCAGTGTTCAAAAAATAAAGCTTACGCTCCAATTGTGCCACATATTTCAGATTTTCCAGAAAACTGAAATCCGTGATATTCGTCCCAGAAATAGTGATTCCTCCGAAAATCGCCTCCACTGATWTCATATTTTCTAAATCACAATTCGTTGTGATTTTGACGTCTCCAAGGATCCAAATACAATTTTTTGAGAGTTTAGTGCAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35041</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>341848</contig_pos>
        <strand>+</strand>
        <context>TGCAAAAAGA[G/T]TTAGAGTTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTGGAATTTCCAAAAAATTGTACATTTCTAGGGGAGAAATGCAAAAAGA</left_flank>
        <right_flank>TTAGAGTTATCGGCGATTCCTACATACACTTCTTTGTTTGGTTTTGTCGG</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATTACCACCGCTGGTTTGTCTGAAAATTTTTATTTTCTTTGACAGTTTTTCCATCTGGGTGGGTGAAGAAGCGGGCTACCCGCTACCCGTCTGGACGGCTCCCACCCGCGGCCCCGCAGGGGCTCCCGCAATCATGTACGTGTGAATTTTGAATCGCCCTCTAAATGGAAACCCTATTCTGTAAAACGGTTTTCAGTGTTCAAAAAATAAAGCTTACGCTCCAATTGTGCCACATATTTCAGATTTTCCAGAAAACTGAAATCCGTGATATTCGTCCCAGAAATAGTGATTCCTCCGAAAATCGCCTCCACTGATTTCATATTTTCTAAATCACAATTCGTTGTGATTTTGACGTCTCCAAGGATCCAAATACAATTTTTTGAGAGTTTAGTGCAAATCGTGTCCATTTTACAATAACTATCCGCATAAATTTGATCTACTCCGGCTGTTGGAATTTCCAAAAAATTGTACATTTCTAGGGGAGAAATGCAAAAAGAGTTAGAGTTATCGGCGATTCCTACATACACTTCTTTGTTTGGTTTTGTCGGATTTTTCATTTTCTGAAAATATGAGATTTCACTTTCGAAAAGTTGAATTTCTGAATTTCCGATATTATAAATTGATTTGTTCCCTCCTTACCTTAATATCTGGCATATTGAGAATTTTAAGTTTTTCGTTAACTTTTACAGAAAATCCATCACAATTAACTTCTGTTAAACTGCCCAATCCAAGTTCTGTCATTTCATAATTCAACAAAATTGAAACTTCAGAATCATCAAAACATTCCACAGCTTCCAATCCTTCCAAAAATTTCAAATTGGCGTAATTTGTACTAATTATGTTCAAAATTCCAATTATTGATTTTACATTTTGAAACAGAAAAATTAATTCTTGCTCTGATAAATCCGTTTTATCATTCAAAGAAATTTCAGCACAAATTTGATTACAAGATTTTGGAAAAAAATGCATATTGCTTTTTGTCAAATTGGTTGAATTGA</canonical>
            <polymorphic>CGATTACCACCGCTGGTTTGTCTGAAAATTTTTATTTTCTTTGACAGTTTTTCCATCTGGGTGGGTGAAGAAGCGGGCTACCCGCTACCCGTCTGGACGGCTCCCACCCGCGGCCCCGCAGGGGCTCCCGCAATCATGTACGTGTGAATTTTGAATCGCCCTCTAAATGGAAACCCTATTCTGTAAAACGGTTTTCAGTGTTCAAAAAATAAAGCTTACGCTCCAATTGTGCCACATATTTCAGATTTTCCAGAAAACTGAAATCCGTGATATTCGTCCCAGAAATAGTGATTCCTCCGAAAATCGCCTCCACTGATTTCATATTTTCTAAATCACAATTCGTTGTGATTTTGACGTCTCCAAGGATCCAAATACAATTTTTTGAGAGTTTAGTGCAAATCGTGTCCATTTTACAATAACTATCCGCATAAATTTGATCTACTCCGGCTGTTGGAATTTCCAAAAAATTGTACATTTCTAGGGGAGAAATGCAAAAAGAKTTAGAGTTATCGGCGATTCCTACATACACTTCTTTGTTTGGTTTTGTCGGATTTTTCATTTTCTGAAAATATGAGATTTCACTTTCGAAAAGTTGAATTTCTGAATTTCCGATATTATAAATTGATTTGTTCCCTCCTTACCTTAATATCTGGCATATTGAGAATTTTAAGTTTTTCGTTAACTTTTACAGAAAATCCATCACAATTAACTTCTGTTAAACTGCCCAATCCAAGTTCTGTCATTTCATAATTCAACAAAATTGAAACTTCAGAATCATCAAAACATTCCACAGCTTCCAATCCTTCCAAAAATTTCAAATTGGCGTAATTTGTACTAATTATGTTCAAAATTCCAATTATTGATTTTACATTTTGAAACAGAAAAATTAATTCTTGCTCTGATAAATCCGTTTTATCATTCAAAGAAATTTCAGCACAAATTTGATTACAAGATTTTGGAAAAAAATGCATATTGCTTTTTGTCAAATTGGTTGAATTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGTGTCCATTTTACAATAACT</pcr_primer_p1>
		<pcr_primer_p2>TATTAAGGTAAGGAGGGAACAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCGTGTCCATTTTACAATAACTATCCGCATAAATTTGATCTACTCCGGCTGTTGGAATTTCCAAAAAATTGTACATTTCTAGGGGAGAAATGCAAAAAGAGTTAGAGTTATCGGCGATTCCTACATACACTTCTTTGTTTGGTTTTGTCGGATTTTTCATTTTCTGAAAATATGAGATTTCACTTTCGAAAAGTTGAATTTCTGAATTTCCGATATTATAAATTGATTTGTTCCCTCCTTACCTTAATA</canonical_amplicon>
		<polymorphic_amplicon>ATCGTGTCCATTTTACAATAACTATCCGCATAAATTTGATCTACTCCGGCTGTTGGAATTTCCAAAAAATTGTACATTTCTAGGGGAGAAATGCAAAAAGAKTTAGAGTTATCGGCGATTCCTACATACACTTCTTTGTTTGGTTTTGTCGGATTTTTCATTTTCTGAAAATATGAGATTTCACTTTCGAAAAGTTGAATTTCTGAATTTCCGATATTATAAATTGATTTGTTCCCTCCTTACCTTAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35042</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>342715</contig_pos>
        <strand>+</strand>
        <context>ACAAACTAGA[C/T]TAGAAAYTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAAATTGGATTTTCTTCTCAAATCCCGTCATGCAGAAGGACAAACTAGA</left_flank>
        <right_flank>TAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATTTTGAAACAGAAAAATTAATTCTTGCTCTGATAAATCCGTTTTATCATTCAAAGAAATTTCAGCACAAATTTGATTACAAGATTTTGGAAAAAAATGCATATTGCTTTTTGTCAAATTGGTTGAATTGAAGGTGCATTTTGGGTCTGGAAATGCGAAATTTCGGAAAATATGTAAACTTTTAAAAAATTAAGAAATTCTTGCTCACCACAATTCTTTTCCTTGAAAAATTCCTGAATATCCTTAGCCTTTTTCGATGATGAAATCACAAAAATTACAGAGAATAGTATGAAAATTTCGTGAATTTTCATTTAAAAGGTGTTAAGTGAAGTTTTTTGAAAAATAAAAGTTTCTCGAAAATTTCAGCTGTGACATTTTCAGCAATTCTGGGGACAGGTGCAAACATAAAAGTTTTTATAATTACATGGTCACAAACCGCAGAAAAAAATAAATTGGATTTTCTTCTCAAATCCCGTCATGCAGAAGGACAAACTAGATTAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGTACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTTGAACTACATGGTGCGCCCAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACTTTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGT</canonical>
            <polymorphic>ACATTTTGAAACAGAAAAATTAATTCTTGCTCTGATAAATCCGTTTTATCATTCAAAGAAATTTCAGCACAAATTTGATTACAAGATTTTGGAAAAAAATGCATATTGCTTTTTGTCAAATTGGTTGAATTGAAGGTGCATTTTGGGTCTGGAAATGCGAAATTTCGGAAAATATGTAAACTTTTAAAAAATTAAGAAATTCTTGCTCACCACAATTCTTTTCCTTGAAAAATTCCTGAATATCCTTAGCCTTTTTCGATGATGAAATCACAAAAATTACAGAGAATAGTATGAAAATTTCGTGAATTTTCATTTAAAAGGTGTTAAGTGAAGTTTTTTGAAAAATAAAAGTTTCTCGAAAATTTCAGCTGTGACATTTTCAGCAATTCTGGGGACAGGTGCAAACATAAAAGTTTTTATAATTACATGGTCACAAACCGCAGAAAAAAATAAATTGGATTTTCTTCTCAAATCCCGTCATGCAGAAGGACAAACTAGAYTAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGTACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTTGAACTACATGGTGCGCCCAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACTTTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATTTTCATTTAAAAGGTGTT</pcr_primer_p1>
		<pcr_primer_p2>AAACTCCTAGGTATCTCGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TGAATTTTCATTTAAAAGGTGTTAAGTGAAGTTTTTTGAAAAATAAAAGTTTCTCGAAAATTTCAGCTGTGACATTTTCAGCAATTCTGGGGACAGGTGCAAACATAAAAGTTTTTATAATTACATGGTCACAAACCGCAGAAAAAAATAAATTGGATTTTCTTCTCAAATCCCGTCATGCAGAAGGACAAACTAGATTAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTT</canonical_amplicon>
		<polymorphic_amplicon>TGAATTTTCATTTAAAAGGTGTTAAGTGAAGTTTTTTGAAAAATAAAAGTTTCTCGAAAATTTCAGCTGTGACATTTTCAGCAATTCTGGGGACAGGTGCAAACATAAAAGTTTTTATAATTACATGGTCACAAACCGCAGAAAAAAATAAATTGGATTTTCTTCTCAAATCCCGTCATGCAGAAGGACAAACTAGAYTAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35043</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>342722</contig_pos>
        <strand>+</strand>
        <context>AGAYTAGAAA[C/T]TTTTTTTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGATTTTCTTCTCAAATCCCGTCATGCAGAAGGACAAACTAGATTAGAAA</left_flank>
        <right_flank>TTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAACAGAAAAATTAATTCTTGCTCTGATAAATCCGTTTTATCATTCAAAGAAATTTCAGCACAAATTTGATTACAAGATTTTGGAAAAAAATGCATATTGCTTTTTGTCAAATTGGTTGAATTGAAGGTGCATTTTGGGTCTGGAAATGCGAAATTTCGGAAAATATGTAAACTTTTAAAAAATTAAGAAATTCTTGCTCACCACAATTCTTTTCCTTGAAAAATTCCTGAATATCCTTAGCCTTTTTCGATGATGAAATCACAAAAATTACAGAGAATAGTATGAAAATTTCGTGAATTTTCATTTAAAAGGTGTTAAGTGAAGTTTTTTGAAAAATAAAAGTTTCTCGAAAATTTCAGCTGTGACATTTTCAGCAATTCTGGGGACAGGTGCAAACATAAAAGTTTTTATAATTACATGGTCACAAACCGCAGAAAAAAATAAATTGGATTTTCTTCTCAAATCCCGTCATGCAGAAGGACAAACTAGATTAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGTACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTTGAACTACATGGTGCGCCCAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACTTTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTT</canonical>
            <polymorphic>GAAACAGAAAAATTAATTCTTGCTCTGATAAATCCGTTTTATCATTCAAAGAAATTTCAGCACAAATTTGATTACAAGATTTTGGAAAAAAATGCATATTGCTTTTTGTCAAATTGGTTGAATTGAAGGTGCATTTTGGGTCTGGAAATGCGAAATTTCGGAAAATATGTAAACTTTTAAAAAATTAAGAAATTCTTGCTCACCACAATTCTTTTCCTTGAAAAATTCCTGAATATCCTTAGCCTTTTTCGATGATGAAATCACAAAAATTACAGAGAATAGTATGAAAATTTCGTGAATTTTCATTTAAAAGGTGTTAAGTGAAGTTTTTTGAAAAATAAAAGTTTCTCGAAAATTTCAGCTGTGACATTTTCAGCAATTCTGGGGACAGGTGCAAACATAAAAGTTTTTATAATTACATGGTCACAAACCGCAGAAAAAAATAAATTGGATTTTCTTCTCAAATCCCGTCATGCAGAAGGACAAACTAGATTAGAAAYTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGTACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTTGAACTACATGGTGCGCCCAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACTTTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>320 144 89 86 81 65 56 52 37 33 16 12 9</canonical_bands>
                <polymorphic_bands>320 225 89 86 65 56 52 37 33 16 12 9</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>252 81 68 56 52 51 47 44 38 36 33 32 29 28 24 21 17 16 16 12 10 9 9 8 7 4</canonical_bands>
                <polymorphic_bands>252 133 68 56 51 47 44 38 36 33 32 29 28 24 21 17 16 16 12 10 9 9 8 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTGACATTTTCAGCAATTC</pcr_primer_p1>
		<pcr_primer_p2>TTAATTGGAAATTTCAAGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTGTGACATTTTCAGCAATTCTGGGGACAGGTGCAAACATAAAAGTTTTTATAATTACATGGTCACAAACCGCAGAAAAAAATAAATTGGATTTTCTTCTCAAATCCCGTCATGCAGAAGGACAAACTAGATTAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGTACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAA</canonical_amplicon>
		<polymorphic_amplicon>CTGTGACATTTTCAGCAATTCTGGGGACAGGTGCAAACATAAAAGTTTTTATAATTACATGGTCACAAACCGCAGAAAAAAATAAATTGGATTTTCTTCTCAAATCCCGTCATGCAGAAGGACAAACTAGATTAGAAAYTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGTACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35044</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>342783</contig_pos>
        <strand>+</strand>
        <context>AGTTCAGACG[A/T]RCAAGAGGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACG</left_flank>
        <right_flank>ACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAAATTTGATTACAAGATTTTGGAAAAAAATGCATATTGCTTTTTGTCAAATTGGTTGAATTGAAGGTGCATTTTGGGTCTGGAAATGCGAAATTTCGGAAAATATGTAAACTTTTAAAAAATTAAGAAATTCTTGCTCACCACAATTCTTTTCCTTGAAAAATTCCTGAATATCCTTAGCCTTTTTCGATGATGAAATCACAAAAATTACAGAGAATAGTATGAAAATTTCGTGAATTTTCATTTAAAAGGTGTTAAGTGAAGTTTTTTGAAAAATAAAAGTTTCTCGAAAATTTCAGCTGTGACATTTTCAGCAATTCTGGGGACAGGTGCAAACATAAAAGTTTTTATAATTACATGGTCACAAACCGCAGAAAAAAATAAATTGGATTTTCTTCTCAAATCCCGTCATGCAGAAGGACAAACTAGATTAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGTACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTTGAACTACATGGTGCGCCCAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACTTTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTGCAAAATAACAATGATGAAAAACAAATTATTGGCTTGTTAATATTCTCG</canonical>
            <polymorphic>ACAAATTTGATTACAAGATTTTGGAAAAAAATGCATATTGCTTTTTGTCAAATTGGTTGAATTGAAGGTGCATTTTGGGTCTGGAAATGCGAAATTTCGGAAAATATGTAAACTTTTAAAAAATTAAGAAATTCTTGCTCACCACAATTCTTTTCCTTGAAAAATTCCTGAATATCCTTAGCCTTTTTCGATGATGAAATCACAAAAATTACAGAGAATAGTATGAAAATTTCGTGAATTTTCATTTAAAAGGTGTTAAGTGAAGTTTTTTGAAAAATAAAAGTTTCTCGAAAATTTCAGCTGTGACATTTTCAGCAATTCTGGGGACAGGTGCAAACATAAAAGTTTTTATAATTACATGGTCACAAACCGCAGAAAAAAATAAATTGGATTTTCTTCTCAAATCCCGTCATGCAGAAGGACAAACTAGATTAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGWACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTTGAACTACATGGTGCGCCCAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACTTTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTGCAAAATAACAATGATGAAAAACAAATTATTGGCTTGTTAATATTCTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 366 134</canonical_bands>
                <polymorphic_bands>866 134</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCATGCAGAAGGACAAACTA</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGAAATCTGGGAATCAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCATGCAGAAGGACAAACTAGATTAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGTACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GTCATGCAGAAGGACAAACTAGATTAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGWACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35045</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>342784</contig_pos>
        <strand>+</strand>
        <context>GTTCAGACGW[A/G]CAAGAGGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGT</left_flank>
        <right_flank>CAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAATTTGATTACAAGATTTTGGAAAAAAATGCATATTGCTTTTTGTCAAATTGGTTGAATTGAAGGTGCATTTTGGGTCTGGAAATGCGAAATTTCGGAAAATATGTAAACTTTTAAAAAATTAAGAAATTCTTGCTCACCACAATTCTTTTCCTTGAAAAATTCCTGAATATCCTTAGCCTTTTTCGATGATGAAATCACAAAAATTACAGAGAATAGTATGAAAATTTCGTGAATTTTCATTTAAAAGGTGTTAAGTGAAGTTTTTTGAAAAATAAAAGTTTCTCGAAAATTTCAGCTGTGACATTTTCAGCAATTCTGGGGACAGGTGCAAACATAAAAGTTTTTATAATTACATGGTCACAAACCGCAGAAAAAAATAAATTGGATTTTCTTCTCAAATCCCGTCATGCAGAAGGACAAACTAGATTAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGTACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTTGAACTACATGGTGCGCCCAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACTTTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTGCAAAATAACAATGATGAAAAACAAATTATTGGCTTGTTAATATTCTCGG</canonical>
            <polymorphic>CAAATTTGATTACAAGATTTTGGAAAAAAATGCATATTGCTTTTTGTCAAATTGGTTGAATTGAAGGTGCATTTTGGGTCTGGAAATGCGAAATTTCGGAAAATATGTAAACTTTTAAAAAATTAAGAAATTCTTGCTCACCACAATTCTTTTCCTTGAAAAATTCCTGAATATCCTTAGCCTTTTTCGATGATGAAATCACAAAAATTACAGAGAATAGTATGAAAATTTCGTGAATTTTCATTTAAAAGGTGTTAAGTGAAGTTTTTTGAAAAATAAAAGTTTCTCGAAAATTTCAGCTGTGACATTTTCAGCAATTCTGGGGACAGGTGCAAACATAAAAGTTTTTATAATTACATGGTCACAAACCGCAGAAAAAAATAAATTGGATTTTCTTCTCAAATCCCGTCATGCAGAAGGACAAACTAGATTAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGTRCAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTTGAACTACATGGTGCGCCCAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACTTTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTGCAAAATAACAATGATGAAAAACAAATTATTGGCTTGTTAATATTCTCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 366 135</canonical_bands>
                <polymorphic_bands>865 135</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCATGCAGAAGGACAAACTA</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGAAATCTGGGAATCAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCATGCAGAAGGACAAACTAGATTAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGTACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GTCATGCAGAAGGACAAACTAGATTAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGTRCAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35046</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>342888</contig_pos>
        <strand>+</strand>
        <context>TAGAAGCATG[C/T]CAAATATTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATG</left_flank>
        <right_flank>CAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTAAACTTTTAAAAAATTAAGAAATTCTTGCTCACCACAATTCTTTTCCTTGAAAAATTCCTGAATATCCTTAGCCTTTTTCGATGATGAAATCACAAAAATTACAGAGAATAGTATGAAAATTTCGTGAATTTTCATTTAAAAGGTGTTAAGTGAAGTTTTTTGAAAAATAAAAGTTTCTCGAAAATTTCAGCTGTGACATTTTCAGCAATTCTGGGGACAGGTGCAAACATAAAAGTTTTTATAATTACATGGTCACAAACCGCAGAAAAAAATAAATTGGATTTTCTTCTCAAATCCCGTCATGCAGAAGGACAAACTAGATTAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGTACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTTGAACTACATGGTGCGCCCAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACTTTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTGCAAAATAACAATGATGAAAAACAAATTATTGGCTTGTTAATATTCTCGGTGGTATTTTGATACTTGTCAAAGAAAGGTGCTGAACCTCGAGATTCCGTTGATTTTTTCAAAAATCGGCTTTGCCACCAGTGTTTTGATAAATTCATTTTTCAA</canonical>
            <polymorphic>ATGTAAACTTTTAAAAAATTAAGAAATTCTTGCTCACCACAATTCTTTTCCTTGAAAAATTCCTGAATATCCTTAGCCTTTTTCGATGATGAAATCACAAAAATTACAGAGAATAGTATGAAAATTTCGTGAATTTTCATTTAAAAGGTGTTAAGTGAAGTTTTTTGAAAAATAAAAGTTTCTCGAAAATTTCAGCTGTGACATTTTCAGCAATTCTGGGGACAGGTGCAAACATAAAAGTTTTTATAATTACATGGTCACAAACCGCAGAAAAAAATAAATTGGATTTTCTTCTCAAATCCCGTCATGCAGAAGGACAAACTAGATTAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGTACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGYCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTTGAACTACATGGTGCGCCCAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACTTTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTGCAAAATAACAATGATGAAAAACAAATTATTGGCTTGTTAATATTCTCGGTGGTATTTTGATACTTGTCAAAGAAAGGTGCTGAACCTCGAGATTCCGTTGATTTTTTCAAAAATCGGCTTTGCCACCAGTGTTTTGATAAATTCATTTTTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCATGC</site>
                <isoschizomers>
                    <enzyme>BbuI</enzyme>
                    <enzyme>PaeI</enzyme>
                    <enzyme>SpaHI</enzyme>
                    <enzyme>SphI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCATGCAGAAGGACAAACTA</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGAAATCTGGGAATCAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCATGCAGAAGGACAAACTAGATTAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGTACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GTCATGCAGAAGGACAAACTAGATTAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGTACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGYCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35047</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>342948</contig_pos>
        <strand>+</strand>
        <context>TTTCTGGTTT[C/T]GAACTACAKG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTT</left_flank>
        <right_flank>GAACTACATGGTGCGCCCAAAGTATGGTAACACATTCAAAGTGTTGTAAC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTGAATATCCTTAGCCTTTTTCGATGATGAAATCACAAAAATTACAGAGAATAGTATGAAAATTTCGTGAATTTTCATTTAAAAGGTGTTAAGTGAAGTTTTTTGAAAAATAAAAGTTTCTCGAAAATTTCAGCTGTGACATTTTCAGCAATTCTGGGGACAGGTGCAAACATAAAAGTTTTTATAATTACATGGTCACAAACCGCAGAAAAAAATAAATTGGATTTTCTTCTCAAATCCCGTCATGCAGAAGGACAAACTAGATTAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGTACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTTGAACTACATGGTGCGCCCAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACTTTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTGCAAAATAACAATGATGAAAAACAAATTATTGGCTTGTTAATATTCTCGGTGGTATTTTGATACTTGTCAAAGAAAGGTGCTGAACCTCGAGATTCCGTTGATTTTTTCAAAAATCGGCTTTGCCACCAGTGTTTTGATAAATTCATTTTTCAAACATCTCACTATTTTTCGAATAAAACAAATCGACAAAACTTATAAAAAATTGATGATTTT</canonical>
            <polymorphic>TCCTGAATATCCTTAGCCTTTTTCGATGATGAAATCACAAAAATTACAGAGAATAGTATGAAAATTTCGTGAATTTTCATTTAAAAGGTGTTAAGTGAAGTTTTTTGAAAAATAAAAGTTTCTCGAAAATTTCAGCTGTGACATTTTCAGCAATTCTGGGGACAGGTGCAAACATAAAAGTTTTTATAATTACATGGTCACAAACCGCAGAAAAAAATAAATTGGATTTTCTTCTCAAATCCCGTCATGCAGAAGGACAAACTAGATTAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGTACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTYGAACTACATGGTGCGCCCAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACTTTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTGCAAAATAACAATGATGAAAAACAAATTATTGGCTTGTTAATATTCTCGGTGGTATTTTGATACTTGTCAAAGAAAGGTGCTGAACCTCGAGATTCCGTTGATTTTTTCAAAAATCGGCTTTGCCACCAGTGTTTTGATAAATTCATTTTTCAAACATCTCACTATTTTTCGAATAAAACAAATCGACAAAACTTATAAAAAATTGATGATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGAAATATGAAAATTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TATTCGAGTATTTTCGGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>GAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTTGAACTACATGGTGCGCCCAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGAATA</canonical_amplicon>
		<polymorphic_amplicon>GAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTYGAACTACATGGTGCGCCCAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35048</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>342957</contig_pos>
        <strand>+</strand>
        <context>TYGAACTACA[G/T]GGTGCGCCMA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTTGAACTACA</left_flank>
        <right_flank>GGTGCGCCCAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTTAGCCTTTTTCGATGATGAAATCACAAAAATTACAGAGAATAGTATGAAAATTTCGTGAATTTTCATTTAAAAGGTGTTAAGTGAAGTTTTTTGAAAAATAAAAGTTTCTCGAAAATTTCAGCTGTGACATTTTCAGCAATTCTGGGGACAGGTGCAAACATAAAAGTTTTTATAATTACATGGTCACAAACCGCAGAAAAAAATAAATTGGATTTTCTTCTCAAATCCCGTCATGCAGAAGGACAAACTAGATTAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGTACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTTGAACTACATGGTGCGCCCAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACTTTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTGCAAAATAACAATGATGAAAAACAAATTATTGGCTTGTTAATATTCTCGGTGGTATTTTGATACTTGTCAAAGAAAGGTGCTGAACCTCGAGATTCCGTTGATTTTTTCAAAAATCGGCTTTGCCACCAGTGTTTTGATAAATTCATTTTTCAAACATCTCACTATTTTTCGAATAAAACAAATCGACAAAACTTATAAAAAATTGATGATTTTTTTTGCTAT</canonical>
            <polymorphic>TCCTTAGCCTTTTTCGATGATGAAATCACAAAAATTACAGAGAATAGTATGAAAATTTCGTGAATTTTCATTTAAAAGGTGTTAAGTGAAGTTTTTTGAAAAATAAAAGTTTCTCGAAAATTTCAGCTGTGACATTTTCAGCAATTCTGGGGACAGGTGCAAACATAAAAGTTTTTATAATTACATGGTCACAAACCGCAGAAAAAAATAAATTGGATTTTCTTCTCAAATCCCGTCATGCAGAAGGACAAACTAGATTAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGTACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTTGAACTACAKGGTGCGCCCAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACTTTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTGCAAAATAACAATGATGAAAAACAAATTATTGGCTTGTTAATATTCTCGGTGGTATTTTGATACTTGTCAAAGAAAGGTGCTGAACCTCGAGATTCCGTTGATTTTTTCAAAAATCGGCTTTGCCACCAGTGTTTTGATAAATTCATTTTTCAAACATCTCACTATTTTTCGAATAAAACAAATCGACAAAACTTATAAAAAATTGATGATTTTTTTTGCTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 190 184 71 53</canonical_bands>
                <polymorphic_bands>573 190 184 53</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGAAATATGAAAATTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TATTCGAGTATTTTCGGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>GAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTTGAACTACATGGTGCGCCCAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGAATA</canonical_amplicon>
		<polymorphic_amplicon>GAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTTGAACTACAKGGTGCGCCCAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35049</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>342966</contig_pos>
        <strand>+</strand>
        <context>AKGGTGCGCC[A/C]AAAGTATGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGTTTTGATTCCCAGATTTCTTTTTCTGGTTTTGAACTACATGGTGCGCC</left_flank>
        <right_flank>AAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTCGATGATGAAATCACAAAAATTACAGAGAATAGTATGAAAATTTCGTGAATTTTCATTTAAAAGGTGTTAAGTGAAGTTTTTTGAAAAATAAAAGTTTCTCGAAAATTTCAGCTGTGACATTTTCAGCAATTCTGGGGACAGGTGCAAACATAAAAGTTTTTATAATTACATGGTCACAAACCGCAGAAAAAAATAAATTGGATTTTCTTCTCAAATCCCGTCATGCAGAAGGACAAACTAGATTAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGTACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTTGAACTACATGGTGCGCCCAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACTTTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTGCAAAATAACAATGATGAAAAACAAATTATTGGCTTGTTAATATTCTCGGTGGTATTTTGATACTTGTCAAAGAAAGGTGCTGAACCTCGAGATTCCGTTGATTTTTTCAAAAATCGGCTTTGCCACCAGTGTTTTGATAAATTCATTTTTCAAACATCTCACTATTTTTCGAATAAAACAAATCGACAAAACTTATAAAAAATTGATGATTTTTTTTGCTATAATCGGAAT</canonical>
            <polymorphic>TTTTTCGATGATGAAATCACAAAAATTACAGAGAATAGTATGAAAATTTCGTGAATTTTCATTTAAAAGGTGTTAAGTGAAGTTTTTTGAAAAATAAAAGTTTCTCGAAAATTTCAGCTGTGACATTTTCAGCAATTCTGGGGACAGGTGCAAACATAAAAGTTTTTATAATTACATGGTCACAAACCGCAGAAAAAAATAAATTGGATTTTCTTCTCAAATCCCGTCATGCAGAAGGACAAACTAGATTAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGTACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTTGAACTACATGGTGCGCCMAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACTTTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTGCAAAATAACAATGATGAAAAACAAATTATTGGCTTGTTAATATTCTCGGTGGTATTTTGATACTTGTCAAAGAAAGGTGCTGAACCTCGAGATTCCGTTGATTTTTTCAAAAATCGGCTTTGCCACCAGTGTTTTGATAAATTCATTTTTCAAACATCTCACTATTTTTCGAATAAAACAAATCGACAAAACTTATAAAAAATTGATGATTTTTTTTGCTATAATCGGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNTGG</site>
                <isoschizomers>
                    <enzyme>AccB7I</enzyme>
                    <enzyme>PflBI</enzyme>
                    <enzyme>PflMI</enzyme>
                    <enzyme>Van91I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGAAATATGAAAATTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TATTCGAGTATTTTCGGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>GAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTTGAACTACATGGTGCGCCCAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGAATA</canonical_amplicon>
		<polymorphic_amplicon>GAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTTGAACTACATGGTGCGCCMAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35050</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>343069</contig_pos>
        <strand>+</strand>
        <context>AAAATAAAAT[A/T]ATGAAAGTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAAT</left_flank>
        <right_flank>ATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGAAAATTTCAGCTGTGACATTTTCAGCAATTCTGGGGACAGGTGCAAACATAAAAGTTTTTATAATTACATGGTCACAAACCGCAGAAAAAAATAAATTGGATTTTCTTCTCAAATCCCGTCATGCAGAAGGACAAACTAGATTAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGTACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTTGAACTACATGGTGCGCCCAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACTTTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTGCAAAATAACAATGATGAAAAACAAATTATTGGCTTGTTAATATTCTCGGTGGTATTTTGATACTTGTCAAAGAAAGGTGCTGAACCTCGAGATTCCGTTGATTTTTTCAAAAATCGGCTTTGCCACCAGTGTTTTGATAAATTCATTTTTCAAACATCTCACTATTTTTCGAATAAAACAAATCGACAAAACTTATAAAAAATTGATGATTTTTTTTGCTATAATCGGAATTTTGTTCTCTGGATTGGAAGTTTTCACAAAGCCATTTGCTCATAATTTCAACAATTCTCTATTTTATTTCAGTTTGAATGATTCTGGAATTTCAGCAGATACA</canonical>
            <polymorphic>CTCGAAAATTTCAGCTGTGACATTTTCAGCAATTCTGGGGACAGGTGCAAACATAAAAGTTTTTATAATTACATGGTCACAAACCGCAGAAAAAAATAAATTGGATTTTCTTCTCAAATCCCGTCATGCAGAAGGACAAACTAGATTAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGTACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTTGAACTACATGGTGCGCCCAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATWATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACTTTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTGCAAAATAACAATGATGAAAAACAAATTATTGGCTTGTTAATATTCTCGGTGGTATTTTGATACTTGTCAAAGAAAGGTGCTGAACCTCGAGATTCCGTTGATTTTTTCAAAAATCGGCTTTGCCACCAGTGTTTTGATAAATTCATTTTTCAAACATCTCACTATTTTTCGAATAAAACAAATCGACAAAACTTATAAAAAATTGATGATTTTTTTTGCTATAATCGGAATTTTGTTCTCTGGATTGGAAGTTTTCACAAAGCCATTTGCTCATAATTTCAACAATTCTCTATTTTATTTCAGTTTGAATGATTCTGGAATTTCAGCAGATACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATAGACTTGAAAACTTGAAA</pcr_primer_p1>
		<pcr_primer_p2>CAATAATTTGTTTTTCATCATTGT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACTTTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTGCAAAATAACAATGATGAAAAACAAATTATTG</canonical_amplicon>
		<polymorphic_amplicon>CGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATWATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACTTTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTGCAAAATAACAATGATGAAAAACAAATTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35051</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>343118</contig_pos>
        <strand>+</strand>
        <context>AGATTCGTTT[A/G]TGTCCAAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTT</left_flank>
        <right_flank>TGTCCAAAACTTTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACATAAAAGTTTTTATAATTACATGGTCACAAACCGCAGAAAAAAATAAATTGGATTTTCTTCTCAAATCCCGTCATGCAGAAGGACAAACTAGATTAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGTACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTTGAACTACATGGTGCGCCCAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACTTTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTGCAAAATAACAATGATGAAAAACAAATTATTGGCTTGTTAATATTCTCGGTGGTATTTTGATACTTGTCAAAGAAAGGTGCTGAACCTCGAGATTCCGTTGATTTTTTCAAAAATCGGCTTTGCCACCAGTGTTTTGATAAATTCATTTTTCAAACATCTCACTATTTTTCGAATAAAACAAATCGACAAAACTTATAAAAAATTGATGATTTTTTTTGCTATAATCGGAATTTTGTTCTCTGGATTGGAAGTTTTCACAAAGCCATTTGCTCATAATTTCAACAATTCTCTATTTTATTTCAGTTTGAATGATTCTGGAATTTCAGCAGATACAGTGCGTCCAATAATGATAAGACACCCCCCATTTTGGACCATAACTCGAG</canonical>
            <polymorphic>AACATAAAAGTTTTTATAATTACATGGTCACAAACCGCAGAAAAAAATAAATTGGATTTTCTTCTCAAATCCCGTCATGCAGAAGGACAAACTAGATTAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGTACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTTGAACTACATGGTGCGCCCAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTRTGTCCAAAACTTTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTGCAAAATAACAATGATGAAAAACAAATTATTGGCTTGTTAATATTCTCGGTGGTATTTTGATACTTGTCAAAGAAAGGTGCTGAACCTCGAGATTCCGTTGATTTTTTCAAAAATCGGCTTTGCCACCAGTGTTTTGATAAATTCATTTTTCAAACATCTCACTATTTTTCGAATAAAACAAATCGACAAAACTTATAAAAAATTGATGATTTTTTTTGCTATAATCGGAATTTTGTTCTCTGGATTGGAAGTTTTCACAAAGCCATTTGCTCATAATTTCAACAATTCTCTATTTTATTTCAGTTTGAATGATTCTGGAATTTCAGCAGATACAGTGCGTCCAATAATGATAAGACACCCCCCATTTTGGACCATAACTCGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATAGACTTGAAAACTTGAAA</pcr_primer_p1>
		<pcr_primer_p2>CAATAATTTGTTTTTCATCATTGT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACTTTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTGCAAAATAACAATGATGAAAAACAAATTATTG</canonical_amplicon>
		<polymorphic_amplicon>CGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTRTGTCCAAAACTTTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTGCAAAATAACAATGATGAAAAACAAATTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35052</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>343130</contig_pos>
        <strand>+</strand>
        <context>GTCCAAAACT[C/T]TTGATTCCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACT</left_flank>
        <right_flank>TTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATAATTACATGGTCACAAACCGCAGAAAAAAATAAATTGGATTTTCTTCTCAAATCCCGTCATGCAGAAGGACAAACTAGATTAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGTACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTTGAACTACATGGTGCGCCCAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACTTTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTGCAAAATAACAATGATGAAAAACAAATTATTGGCTTGTTAATATTCTCGGTGGTATTTTGATACTTGTCAAAGAAAGGTGCTGAACCTCGAGATTCCGTTGATTTTTTCAAAAATCGGCTTTGCCACCAGTGTTTTGATAAATTCATTTTTCAAACATCTCACTATTTTTCGAATAAAACAAATCGACAAAACTTATAAAAAATTGATGATTTTTTTTGCTATAATCGGAATTTTGTTCTCTGGATTGGAAGTTTTCACAAAGCCATTTGCTCATAATTTCAACAATTCTCTATTTTATTTCAGTTTGAATGATTCTGGAATTTCAGCAGATACAGTGCGTCCAATAATGATAAGACACCCCCCATTTTGGACCATAACTCGAGAACGAAAAAAGA</canonical>
            <polymorphic>TTTATAATTACATGGTCACAAACCGCAGAAAAAAATAAATTGGATTTTCTTCTCAAATCCCGTCATGCAGAAGGACAAACTAGATTAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGTACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTTGAACTACATGGTGCGCCCAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACTYTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTGCAAAATAACAATGATGAAAAACAAATTATTGGCTTGTTAATATTCTCGGTGGTATTTTGATACTTGTCAAAGAAAGGTGCTGAACCTCGAGATTCCGTTGATTTTTTCAAAAATCGGCTTTGCCACCAGTGTTTTGATAAATTCATTTTTCAAACATCTCACTATTTTTCGAATAAAACAAATCGACAAAACTTATAAAAAATTGATGATTTTTTTTGCTATAATCGGAATTTTGTTCTCTGGATTGGAAGTTTTCACAAAGCCATTTGCTCATAATTTCAACAATTCTCTATTTTATTTCAGTTTGAATGATTCTGGAATTTCAGCAGATACAGTGCGTCCAATAATGATAAGACACCCCCCATTTTGGACCATAACTCGAGAACGAAAAAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATAGACTTGAAAACTTGAAA</pcr_primer_p1>
		<pcr_primer_p2>CAATAATTTGTTTTTCATCATTGT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACTTTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTGCAAAATAACAATGATGAAAAACAAATTATTG</canonical_amplicon>
		<polymorphic_amplicon>CGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACTYTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTGCAAAATAACAATGATGAAAAACAAATTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35053</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>343149</contig_pos>
        <strand>+</strand>
        <context>TCATTTCCGG[A/T]ACAAAAATTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCTTCACAAGATTCGTTTATGTCCAAAACTTTTGATTCCTCATTTCCGG</left_flank>
        <right_flank>ACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACCGCAGAAAAAAATAAATTGGATTTTCTTCTCAAATCCCGTCATGCAGAAGGACAAACTAGATTAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGTACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTTGAACTACATGGTGCGCCCAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACTTTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTGCAAAATAACAATGATGAAAAACAAATTATTGGCTTGTTAATATTCTCGGTGGTATTTTGATACTTGTCAAAGAAAGGTGCTGAACCTCGAGATTCCGTTGATTTTTTCAAAAATCGGCTTTGCCACCAGTGTTTTGATAAATTCATTTTTCAAACATCTCACTATTTTTCGAATAAAACAAATCGACAAAACTTATAAAAAATTGATGATTTTTTTTGCTATAATCGGAATTTTGTTCTCTGGATTGGAAGTTTTCACAAAGCCATTTGCTCATAATTTCAACAATTCTCTATTTTATTTCAGTTTGAATGATTCTGGAATTTCAGCAGATACAGTGCGTCCAATAATGATAAGACACCCCCCATTTTGGACCATAACTCGAGAACGAAAAAAGATATTGAAAAACTGCAAACG</canonical>
            <polymorphic>AAACCGCAGAAAAAAATAAATTGGATTTTCTTCTCAAATCCCGTCATGCAGAAGGACAAACTAGATTAGAAATTTTTTTTTGAAATATGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGTACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTTGAACTACATGGTGCGCCCAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACTTTTGATTCCTCATTTCCGGWACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTGCAAAATAACAATGATGAAAAACAAATTATTGGCTTGTTAATATTCTCGGTGGTATTTTGATACTTGTCAAAGAAAGGTGCTGAACCTCGAGATTCCGTTGATTTTTTCAAAAATCGGCTTTGCCACCAGTGTTTTGATAAATTCATTTTTCAAACATCTCACTATTTTTCGAATAAAACAAATCGACAAAACTTATAAAAAATTGATGATTTTTTTTGCTATAATCGGAATTTTGTTCTCTGGATTGGAAGTTTTCACAAAGCCATTTGCTCATAATTTCAACAATTCTCTATTTTATTTCAGTTTGAATGATTCTGGAATTTCAGCAGATACAGTGCGTCCAATAATGATAAGACACCCCCCATTTTGGACCATAACTCGAGAACGAAAAAAGATATTGAAAAACTGCAAACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 366 134</canonical_bands>
                <polymorphic_bands>866 134</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAATAGACTTGAAAACTTGAAA</pcr_primer_p1>
		<pcr_primer_p2>CAATAATTTGTTTTTCATCATTGT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACTTTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTGCAAAATAACAATGATGAAAAACAAATTATTG</canonical_amplicon>
		<polymorphic_amplicon>CGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACTTTTGATTCCTCATTTCCGGWACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTGCAAAATAACAATGATGAAAAACAAATTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35054</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>343236</contig_pos>
        <strand>+</strand>
        <context>TACTTCTCTG[C/T]AAAATAACAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTG</left_flank>
        <right_flank>AAAATAACAATGATGAAAAACAAATTATTGGCTTGTTAATATTCTCGGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGTACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTTGAACTACATGGTGCGCCCAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACTTTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTGCAAAATAACAATGATGAAAAACAAATTATTGGCTTGTTAATATTCTCGGTGGTATTTTGATACTTGTCAAAGAAAGGTGCTGAACCTCGAGATTCCGTTGATTTTTTCAAAAATCGGCTTTGCCACCAGTGTTTTGATAAATTCATTTTTCAAACATCTCACTATTTTTCGAATAAAACAAATCGACAAAACTTATAAAAAATTGATGATTTTTTTTGCTATAATCGGAATTTTGTTCTCTGGATTGGAAGTTTTCACAAAGCCATTTGCTCATAATTTCAACAATTCTCTATTTTATTTCAGTTTGAATGATTCTGGAATTTCAGCAGATACAGTGCGTCCAATAATGATAAGACACCCCCCATTTTGGACCATAACTCGAGAACGAAAAAAGATATTGAAAAACTGCAAACGCCAATCGTCTTAAAATTGAAAAATACTCTAGGACAACAGTTATTAGTTTGGTCCGTGCGGTGAGACCCTCGGATGCTGTCCGTGTTG</canonical>
            <polymorphic>TGAATATTTCGAAATCGAGATACCTAGGAGTTTATAAGTTCAGACGTACAAGAGGAAATATGAAAATTCAAAAACCTTGAAATTTCCAATTAAAAAAAACAGTATGAAACTTTATTTCCTGAAAAAACCTAAAAATCAAATTAGAAGCATGCCAAATATTATAAAAAATTCTCCGTTTTGGTTTTGATTCCCAGATTTCTTTTTCTGGTTTTGAACTACATGGTGCGCCCAAAGTATGGTAACACATTCAAAGTGTTGTAACTTCTCCGAAAATACTCGAATAGACTTGAAAACTTGAAAATAGTTTAATGAATACTTTCTAAAAATAAAATAATGAAAGTTGTTCGATGCGATTGCCCTTGATCTTCACAAGATTCGTTTATGTCCAAAACTTTTGATTCCTCATTTCCGGTACAAAAATTGTATTTTTTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTGYAAAATAACAATGATGAAAAACAAATTATTGGCTTGTTAATATTCTCGGTGGTATTTTGATACTTGTCAAAGAAAGGTGCTGAACCTCGAGATTCCGTTGATTTTTTCAAAAATCGGCTTTGCCACCAGTGTTTTGATAAATTCATTTTTCAAACATCTCACTATTTTTCGAATAAAACAAATCGACAAAACTTATAAAAAATTGATGATTTTTTTTGCTATAATCGGAATTTTGTTCTCTGGATTGGAAGTTTTCACAAAGCCATTTGCTCATAATTTCAACAATTCTCTATTTTATTTCAGTTTGAATGATTCTGGAATTTCAGCAGATACAGTGCGTCCAATAATGATAAGACACCCCCCATTTTGGACCATAACTCGAGAACGAAAAAAGATATTGAAAAACTGCAAACGCCAATCGTCTTAAAATTGAAAAATACTCTAGGACAACAGTTATTAGTTTGGTCCGTGCGGTGAGACCCTCGGATGCTGTCCGTGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>499 408 93</canonical_bands>
                <polymorphic_bands>907 93</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTTATTCGAGACACATAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTTATTCGAAAAATAGTGAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTGCAAAATAACAATGATGAAAAACAAATTATTGGCTTGTTAATATTCTCGGTGGTATTTTGATACTTGTCAAAGAAAGGTGCTGAACCTCGAGATTCCGTTGATTTTTTCAAAAATCGGCTTTGCCACCAGTGTTTTGATAAATTCATTTTTCAAACATCTCACTATTTTTCGAATAAAACA</canonical_amplicon>
		<polymorphic_amplicon>TTGTTATTCGAGACACATAAAAATGTATTGTTCATTCACTTTTTTCTGGTTCCATTTTTTTACTTCTCTGYAAAATAACAATGATGAAAAACAAATTATTGGCTTGTTAATATTCTCGGTGGTATTTTGATACTTGTCAAAGAAAGGTGCTGAACCTCGAGATTCCGTTGATTTTTTCAAAAATCGGCTTTGCCACCAGTGTTTTGATAAATTCATTTTTCAAACATCTCACTATTTTTCGAATAAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35055</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>382919</contig_pos>
        <strand>+</strand>
        <context>TCATGGGAGR[A/G]ACTGCGAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAATAGGATTCAAGAAGCGAAGAACTCCATAAAAATTTATCATGGGAGG</left_flank>
        <right_flank>ACTGCGAAATTGGTTGGTTGCCTTGGGTCGTAAAAATATCAAAGTACCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCAGAATTGCTATAACCCTTCTTGTTGGATCGTGCCAATTTTTAGCAGCAGTTTTCCAAGCTTCAGAAGTTTTTCTTTTGGGACAGATGATTTTAGGATCACATTATTCTATACGCCACTTCACGAGCATTATGTATATTTTGGAGTGTACACCGGACAATTGTAGAGGTATCAAATCACTTTTGAAGCTATAGAAACCCCGATTTCCAGGATTCGCTGGAACGTTTCTCGTGTTCGATTATGTTTTAGCAAAACTGTTCATGTTCACTGCAGCGTCTCCAAGTTTACTCGGAACAACATCTTCCTGGTTCATTTTCCCGCTCGTCACAATGATAAGGTGATAATGTGATAGGTACAAAACCTACATCTTTTTTCTGTTATCAGTTCTGTTGCTGTTCTATTCTTTTTACTTCGTTTCCCAGAATCGCCGAAATGGCTTGTTCAGCAGAATAGGATTCAAGAAGCGAAGAACTCCATAAAAATTTATCATGGGAGGAACTGCGAAATTGGTTGGTTGCCTTGGGTCGTAAAAATATCAAAGTACCAGTTTAGAGCAAGTTGTGACGTCCATGATAAAAGAGAAGAATTTGACTGATGAGGAAAAACTAACTCTACGCCAAATTTGGGAAAATGAGACTTTGCGGCAGGTAGAGTTAGCTTTTTTGTGGAGATGTATACATGTCAGGATACAGGCATTTAAAATTTTGATGGCTTTGCTGATTTTCAATGTTTTTGACACAACTATGGTTCTATCAGTTTATACAATTCTCCTCCATAAGGAAGCTGGATTCACTGTGCAGATGGTGGGTGTGTGCGGGTTTGATTGTGATTACGGTAATTGTACAAAACCTTTCCAGACTATGAATATCACTCTAATCCTGACTTTCATAACGGTCCCGACCAAATTCTTTGGTACTTTTATGTTGGATGGTTTGGGAAGACGACCGACACTTTTAATTGCTGGTGTTATGGAATATATGAAATCGAGTTTACTCTT</canonical>
            <polymorphic>TTTTCAGAATTGCTATAACCCTTCTTGTTGGATCGTGCCAATTTTTAGCAGCAGTTTTCCAAGCTTCAGAAGTTTTTCTTTTGGGACAGATGATTTTAGGATCACATTATTCTATACGCCACTTCACGAGCATTATGTATATTTTGGAGTGTACACCGGACAATTGTAGAGGTATCAAATCACTTTTGAAGCTATAGAAACCCCGATTTCCAGGATTCGCTGGAACGTTTCTCGTGTTCGATTATGTTTTAGCAAAACTGTTCATGTTCACTGCAGCGTCTCCAAGTTTACTCGGAACAACATCTTCCTGGTTCATTTTCCCGCTCGTCACAATGATAAGGTGATAATGTGATAGGTACAAAACCTACATCTTTTTTCTGTTATCAGTTCTGTTGCTGTTCTATTCTTTTTACTTCGTTTCCCAGAATCGCCGAAATGGCTTGTTCAGCAGAATAGGATTCAAGAAGCGAAGAACTCCATAAAAATTTATCATGGGAGGRACTGCGAAATTGGTTGGTTGCCTTGGGTCGTAAAAATATCAAAGTACCAGTTTAGAGCAAGTTGTGACGTCCATGATAAAAGAGAAGAATTTGACTGATGAGGAAAAACTAACTCTACGCCAAATTTGGGAAAATGAGACTTTGCGGCAGGTAGAGTTAGCTTTTTTGTGGAGATGTATACATGTCAGGATACAGGCATTTAAAATTTTGATGGCTTTGCTGATTTTCAATGTTTTTGACACAACTATGGTTCTATCAGTTTATACAATTCTCCTCCATAAGGAAGCTGGATTCACTGTGCAGATGGTGGGTGTGTGCGGGTTTGATTGTGATTACGGTAATTGTACAAAACCTTTCCAGACTATGAATATCACTCTAATCCTGACTTTCATAACGGTCCCGACCAAATTCTTTGGTACTTTTATGTTGGATGGTTTGGGAAGACGACCGACACTTTTAATTGCTGGTGTTATGGAATATATGAAATCGAGTTTACTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTATCAGTTCTGTTGCTGTTCT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTGGCGTAGAGTTAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTATCAGTTCTGTTGCTGTTCTATTCTTTTTACTTCGTTTCCCAGAATCGCCGAAATGGCTTGTTCAGCAGAATAGGATTCAAGAAGCGAAGAACTCCATAAAAATTTATCATGGGAGGAACTGCGAAATTGGTTGGTTGCCTTGGGTCGTAAAAATATCAAAGTACCAGTTTAGAGCAAGTTGTGACGTCCATGATAAAAGAGAAGAATTTGACTGATGAGGAAAAACTAACTCTACGCCAAATTT</canonical_amplicon>
		<polymorphic_amplicon>GTTATCAGTTCTGTTGCTGTTCTATTCTTTTTACTTCGTTTCCCAGAATCGCCGAAATGGCTTGTTCAGCAGAATAGGATTCAAGAAGCGAAGAACTCCATAAAAATTTATCATGGGAGGRACTGCGAAATTGGTTGGTTGCCTTGGGTCGTAAAAATATCAAAGTACCAGTTTAGAGCAAGTTGTGACGTCCATGATAAAAGAGAAGAATTTGACTGATGAGGAAAAACTAACTCTACGCCAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35056</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>383281</contig_pos>
        <strand>+</strand>
        <context>CCTTTCCAGR[A/G]TATGAATATC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTGTGCGGGTTTGATTGTGATTACGGTAATTGTACAAAACCTTTCCAGA</left_flank>
        <right_flank>TATGAATATCACTCTAATCCTGACTTTCATAACGGTCCCGACCAAATTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTACATCTTTTTTCTGTTATCAGTTCTGTTGCTGTTCTATTCTTTTTACTTCGTTTCCCAGAATCGCCGAAATGGCTTGTTCAGCAGAATAGGATTCAAGAAGCGAAGAACTCCATAAAAATTTATCATGGGAGGAACTGCGAAATTGGTTGGTTGCCTTGGGTCGTAAAAATATCAAAGTACCAGTTTAGAGCAAGTTGTGACGTCCATGATAAAAGAGAAGAATTTGACTGATGAGGAAAAACTAACTCTACGCCAAATTTGGGAAAATGAGACTTTGCGGCAGGTAGAGTTAGCTTTTTTGTGGAGATGTATACATGTCAGGATACAGGCATTTAAAATTTTGATGGCTTTGCTGATTTTCAATGTTTTTGACACAACTATGGTTCTATCAGTTTATACAATTCTCCTCCATAAGGAAGCTGGATTCACTGTGCAGATGGTGGGTGTGTGCGGGTTTGATTGTGATTACGGTAATTGTACAAAACCTTTCCAGACTATGAATATCACTCTAATCCTGACTTTCATAACGGTCCCGACCAAATTCTTTGGTACTTTTATGTTGGATGGTTTGGGAAGACGACCGACACTTTTAATTGCTGGTGTTATGGAATATATGAAATCGAGTTTACTCTTGACGACTCAAACTATAATATATTTTGTTGGCTCAAGTCTACTAACTCAAATTTTGTGTAAGCTCAAAATTTCGGTTACAGCAAAAAAATTTTTTTTTTCAGATGTGATTTCCGAATTTCTAAATGCAATCGTTCCTGCAACCGGCGTTCACACTATTCGCATACTCTTTGTGACCGAGCTGTTCCCACCGAGCGCACGGACTGCAGTTGCACAGGTAACAATCAATTTTACATGAAAAACATTTAAAATCCTAAATTTTAGGCGTTAATGTTTGGTGGTATGATTCTGAGCACTCCAATCACCACATTGTTCCCAATAATAGACTCTATATTTCCGCCAATTTATTATTTTCCATTTGTAAT</canonical>
            <polymorphic>ACCTACATCTTTTTTCTGTTATCAGTTCTGTTGCTGTTCTATTCTTTTTACTTCGTTTCCCAGAATCGCCGAAATGGCTTGTTCAGCAGAATAGGATTCAAGAAGCGAAGAACTCCATAAAAATTTATCATGGGAGGAACTGCGAAATTGGTTGGTTGCCTTGGGTCGTAAAAATATCAAAGTACCAGTTTAGAGCAAGTTGTGACGTCCATGATAAAAGAGAAGAATTTGACTGATGAGGAAAAACTAACTCTACGCCAAATTTGGGAAAATGAGACTTTGCGGCAGGTAGAGTTAGCTTTTTTGTGGAGATGTATACATGTCAGGATACAGGCATTTAAAATTTTGATGGCTTTGCTGATTTTCAATGTTTTTGACACAACTATGGTTCTATCAGTTTATACAATTCTCCTCCATAAGGAAGCTGGATTCACTGTGCAGATGGTGGGTGTGTGCGGGTTTGATTGTGATTACGGTAATTGTACAAAACCTTTCCAGARTATGAATATCACTCTAATCCTGACTTTCATAACGGTCCCGACCAAATTCTTTGGTACTTTTATGTTGGATGGTTTGGGAAGACGACCGACACTTTTAATTGCTGGTGTTATGGAATATATGAAATCGAGTTTACTCTTGACGACTCAAACTATAATATATTTTGTTGGCTCAAGTCTACTAACTCAAATTTTGTGTAAGCTCAAAATTTCGGTTACAGCAAAAAAATTTTTTTTTTCAGATGTGATTTCCGAATTTCTAAATGCAATCGTTCCTGCAACCGGCGTTCACACTATTCGCATACTCTTTGTGACCGAGCTGTTCCCACCGAGCGCACGGACTGCAGTTGCACAGGTAACAATCAATTTTACATGAAAAACATTTAAAATCCTAAATTTTAGGCGTTAATGTTTGGTGGTATGATTCTGAGCACTCCAATCACCACATTGTTCCCAATAATAGACTCTATATTTCCGCCAATTTATTATTTTCCATTTGTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCAATGTTTTTGACACAAC</pcr_primer_p1>
		<pcr_primer_p2>TAACACCAGCAATTAAAAGTGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCAATGTTTTTGACACAACTATGGTTCTATCAGTTTATACAATTCTCCTCCATAAGGAAGCTGGATTCACTGTGCAGATGGTGGGTGTGTGCGGGTTTGATTGTGATTACGGTAATTGTACAAAACCTTTCCAGACTATGAATATCACTCTAATCCTGACTTTCATAACGGTCCCGACCAAATTCTTTGGTACTTTTATGTTGGATGGTTTGGGAAGACGACCGACACTTTTAATTGCTGGTGTTA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCAATGTTTTTGACACAACTATGGTTCTATCAGTTTATACAATTCTCCTCCATAAGGAAGCTGGATTCACTGTGCAGATGGTGGGTGTGTGCGGGTTTGATTGTGATTACGGTAATTGTACAAAACCTTTCCAGARTATGAATATCACTCTAATCCTGACTTTCATAACGGTCCCGACCAAATTCTTTGGTACTTTTATGTTGGATGGTTTGGGAAGACGACCGACACTTTTAATTGCTGGTGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35057</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>398457</contig_pos>
        <strand></strand>
        <context>ttggaatttt[T/C]aTGAAAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGAGTGTTTATACTCATTTGGAAGCTCTCAATCTAACAAATTGGAATTTT</left_flank>
        <right_flank>ATGAAAAATTTAAGGTACCTGAATGTATAAAGCTCGCAGAAACTTTTTCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCCAAGATATTTAAAAAATAAATACATTTCTAGGCGACAAGAGAAGAAAAGTCAACAGCTGCACTACTGATGGTTTCTCGGCACATGGTCCATTATAATTATTTTTCATTTATACTACCACATTCAAAATGTTCACATTATACTGAATTCGGATATTCACAGTAGACGGCATATTAGTGGTTGTTTTTCCCTCAAACATGCTCTTCCTACGGTCGGTGCCAACATTGCTCAGCCGCCTACAGAAGATATTTTGAATGACCGCCCTATAGGGTTTGTGAAGCCAGATCATGACAATTGTAGATGAGACACCATGTAGGGAGTATATAATAAAGGTAATGTTGTTGGCTGCCTGGTTATAATAATGAAGAGGAACAGCCACACCAAGGTAGAACAATGGGACGCCCATGTTCAGAAGTATCATTAGAATCTGAAGTAAAAATCAAAGTATGGAGTGTTTATACTCATTTGGAAGCTCTCAATCTAACAAATTGGAATTTTTATGAAAAATTTAAGGTACCTGAATGTATAAAGCTCGCAGAAACTTTTTCTGAATTATCACACAGTTGATTGACACTGTTCTCTCCCTTAACGCTTTCGACGCTCCCAGAAATATCAAAACCACAAAGGCCAACGCCTCGGCTACAATCAACACTCCCATAAGTACAACCGAACCAATAACCAGTGAGAAATCAATAGCAACCACATAAATAGGCATTCTTCTGATTCTTTCTGGGAGCTCTGGTAGGTTTTCATGAAGTTTTTGTAGTCCGGTAGCTTGATCAGGAGCGTTGAGATAGGCGGGAAGGAATATTAAGAAGGCAAGGAAGTAGTTGAATAGCATGCATGGGATACGGAAGTGGCGCCAGCAAGAATTTTTACCGAACGATAGGTAATATCGGTTTTCGAAGATGGAAACAATGGCGGCACAAACGACTGTAACTTATTTTTTCTTGGTTGGCTATGGAGCAAAATGGGAAGATTCCCTCCGAGATAATTGCG</canonical>
            <polymorphic>TGCCAAGATATTTAAAAAATAAATACATTTCTAGGCGACAAGAGAAGAAAAGTCAACAGCTGCACTACTGATGGTTTCTCGGCACATGGTCCATTATAATTATTTTTCATTTATACTACCACATTCAAAATGTTCACATTATACTGAATTCGGATATTCACAGTAGACGGCATATTAGTGGTTGTTTTTCCCTCAAACATGCTCTTCCTACGGTCGGTGCCAACATTGCTCAGCCGCCTACAGAAGATATTTTGAATGACCGCCCTATAGGGTTTGTGAAGCCAGATCATGACAATTGTAGATGAGACACCATGTAGGGAGTATATAATAAAGGTAATGTTGTTGGCTGCCTGGTTATAATAATGAAGAGGAACAGCCACACCAAGGTAGAACAATGGGACGCCCATGTTCAGAAGTATCATTAGAATCTGAAGTAAAAATCAAAGTATGGAGTGTTTATACTCATTTGGAAGCTCTCAATCTAACAAATTGGAATTTTYATGAAAAATTTAAGGTACCTGAATGTATAAAGCTCGCAGAAACTTTTTCTGAATTATCACACAGTTGATTGACACTGTTCTCTCCCTTAACGCTTTCGACGCTCCCAGAAATATCAAAACCACAAAGGCCAACGCCTCGGCTACAATCAACACTCCCATAAGTACAACCGAACCAATAACCAGTGAGAAATCAATAGCAACCACATAAATAGGCATTCTTCTGATTCTTTCTGGGAGCTCTGGTAGGTTTTCATGAAGTTTTTGTAGTCCGGTAGCTTGATCAGGAGCGTTGAGATAGGCGGGAAGGAATATTAAGAAGGCAAGGAAGTAGTTGAATAGCATGCATGGGATACGGAAGTGGCGCCAGCAAGAATTTTTACCGAACGATAGGTAATATCGGTTTTCGAAGATGGAAACAATGGCGGCACAAACGACTGTAACTTATTTTTTCTTGGTTGGCTATGGAGCAAAATGGGAAGATTCCCTCCGAGATAATTGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGCCTGGTTATAATAATGAAGA</pcr_primer_p1>
		<pcr_primer_p2>GGAGAGAACAGTGTCAATCAAC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CTGCCTGGTTATAATAATGAAGAGGAACAGCCACACCAAGGTAGAACAATGGGACGCCCATGTTCAGAAGTATCATTAGAATCTGAAGTAAAAATCAAAGTATGGAGTGTTTATACTCATTTGGAAGCTCTCAATCTAACAAATTGGAATTTTTATGAAAAATTTAAGGTACCTGAATGTATAAAGCTCGCAGAAACTTTTTCTGAATTATCACACAGTTGATTGACACTGTTCTCTCC</canonical_amplicon>
		<polymorphic_amplicon>CTGCCTGGTTATAATAATGAAGAGGAACAGCCACACCAAGGTAGAACAATGGGACGCCCATGTTCAGAAGTATCATTAGAATCTGAAGTAAAAATCAAAGTATGGAGTGTTTATACTCATTTGGAAGCTCTCAATCTAACAAATTGGAATTTTYATGAAAAATTTAAGGTACCTGAATGTATAAAGCTCGCAGAAACTTTTTCTGAATTATCACACAGTTGATTGACACTGTTCTCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35058</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>398468</contig_pos>
        <strand>+</strand>
        <context>aTGAAAAATT[C/T]AAGGTACCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTCATTTGGAAGCTCTCAATCTAACAAATTGGAATTTTTATGAAAAATT</left_flank>
        <right_flank>AAGGTACCTGAATGTATAAAGCTCGCAGAAACTTTTTCTGAATTATCACA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAAAAAATAAATACATTTCTAGGCGACAAGAGAAGAAAAGTCAACAGCTGCACTACTGATGGTTTCTCGGCACATGGTCCATTATAATTATTTTTCATTTATACTACCACATTCAAAATGTTCACATTATACTGAATTCGGATATTCACAGTAGACGGCATATTAGTGGTTGTTTTTCCCTCAAACATGCTCTTCCTACGGTCGGTGCCAACATTGCTCAGCCGCCTACAGAAGATATTTTGAATGACCGCCCTATAGGGTTTGTGAAGCCAGATCATGACAATTGTAGATGAGACACCATGTAGGGAGTATATAATAAAGGTAATGTTGTTGGCTGCCTGGTTATAATAATGAAGAGGAACAGCCACACCAAGGTAGAACAATGGGACGCCCATGTTCAGAAGTATCATTAGAATCTGAAGTAAAAATCAAAGTATGGAGTGTTTATACTCATTTGGAAGCTCTCAATCTAACAAATTGGAATTTTTATGAAAAATTTAAGGTACCTGAATGTATAAAGCTCGCAGAAACTTTTTCTGAATTATCACACAGTTGATTGACACTGTTCTCTCCCTTAACGCTTTCGACGCTCCCAGAAATATCAAAACCACAAAGGCCAACGCCTCGGCTACAATCAACACTCCCATAAGTACAACCGAACCAATAACCAGTGAGAAATCAATAGCAACCACATAAATAGGCATTCTTCTGATTCTTTCTGGGAGCTCTGGTAGGTTTTCATGAAGTTTTTGTAGTCCGGTAGCTTGATCAGGAGCGTTGAGATAGGCGGGAAGGAATATTAAGAAGGCAAGGAAGTAGTTGAATAGCATGCATGGGATACGGAAGTGGCGCCAGCAAGAATTTTTACCGAACGATAGGTAATATCGGTTTTCGAAGATGGAAACAATGGCGGCACAAACGACTGTAACTTATTTTTTCTTGGTTGGCTATGGAGCAAAATGGGAAGATTCCCTCCGAGATAATTGCGAAAATTTTATT</canonical>
            <polymorphic>TTAAAAAATAAATACATTTCTAGGCGACAAGAGAAGAAAAGTCAACAGCTGCACTACTGATGGTTTCTCGGCACATGGTCCATTATAATTATTTTTCATTTATACTACCACATTCAAAATGTTCACATTATACTGAATTCGGATATTCACAGTAGACGGCATATTAGTGGTTGTTTTTCCCTCAAACATGCTCTTCCTACGGTCGGTGCCAACATTGCTCAGCCGCCTACAGAAGATATTTTGAATGACCGCCCTATAGGGTTTGTGAAGCCAGATCATGACAATTGTAGATGAGACACCATGTAGGGAGTATATAATAAAGGTAATGTTGTTGGCTGCCTGGTTATAATAATGAAGAGGAACAGCCACACCAAGGTAGAACAATGGGACGCCCATGTTCAGAAGTATCATTAGAATCTGAAGTAAAAATCAAAGTATGGAGTGTTTATACTCATTTGGAAGCTCTCAATCTAACAAATTGGAATTTTTATGAAAAATTYAAGGTACCTGAATGTATAAAGCTCGCAGAAACTTTTTCTGAATTATCACACAGTTGATTGACACTGTTCTCTCCCTTAACGCTTTCGACGCTCCCAGAAATATCAAAACCACAAAGGCCAACGCCTCGGCTACAATCAACACTCCCATAAGTACAACCGAACCAATAACCAGTGAGAAATCAATAGCAACCACATAAATAGGCATTCTTCTGATTCTTTCTGGGAGCTCTGGTAGGTTTTCATGAAGTTTTTGTAGTCCGGTAGCTTGATCAGGAGCGTTGAGATAGGCGGGAAGGAATATTAAGAAGGCAAGGAAGTAGTTGAATAGCATGCATGGGATACGGAAGTGGCGCCAGCAAGAATTTTTACCGAACGATAGGTAATATCGGTTTTCGAAGATGGAAACAATGGCGGCACAAACGACTGTAACTTATTTTTTCTTGGTTGGCTATGGAGCAAAATGGGAAGATTCCCTCCGAGATAATTGCGAAAATTTTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>365 347 135 131 13 9</canonical_bands>
                <polymorphic_bands>378 347 135 131 9</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>498 225 199 77 1</canonical_bands>
                <polymorphic_bands>575 225 199 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGCCTGGTTATAATAATGAAGA</pcr_primer_p1>
		<pcr_primer_p2>GGAGAGAACAGTGTCAATCAAC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CTGCCTGGTTATAATAATGAAGAGGAACAGCCACACCAAGGTAGAACAATGGGACGCCCATGTTCAGAAGTATCATTAGAATCTGAAGTAAAAATCAAAGTATGGAGTGTTTATACTCATTTGGAAGCTCTCAATCTAACAAATTGGAATTTTTATGAAAAATTTAAGGTACCTGAATGTATAAAGCTCGCAGAAACTTTTTCTGAATTATCACACAGTTGATTGACACTGTTCTCTCC</canonical_amplicon>
		<polymorphic_amplicon>CTGCCTGGTTATAATAATGAAGAGGAACAGCCACACCAAGGTAGAACAATGGGACGCCCATGTTCAGAAGTATCATTAGAATCTGAAGTAAAAATCAAAGTATGGAGTGTTTATACTCATTTGGAAGCTCTCAATCTAACAAATTGGAATTTTTATGAAAAATTYAAGGTACCTGAATGTATAAAGCTCGCAGAAACTTTTTCTGAATTATCACACAGTTGATTGACACTGTTCTCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35059</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>405361</contig_pos>
        <strand></strand>
        <context>aataattaat[T/G]tatatttttG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GAGGAGGCGAAAGAAGAACAAGATGCCGAAGGAAATAATCAATAATTAAT</left_flank>
        <right_flank>TATATTTTTGTCAGTAATTTTTGAATTTTATTTTCCTGTAACTAATGGTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACGACGACGATTCAGATGACGTTTCTCTCCAAAACGCTGATGATCAAGCGGACGCCCAAGATATTTGCTTAATAATGGGGAATCCACCGAAGCTGAGCGACGTCATCGAGGAGTTCCTGGAACGTCTTCGCCCGATGAAACAGCTTGGATTCATTCGACCACAACGATCGGTTTACTGTCTCGTGTGTCTGAAATACGTCAAATCGTTCCATGAGTGCAATTGGAAGCATACGTTTAGCGAGGAGCGAATCGCTGAGATGTGGTATAGGTGAGGAGAGATGCCATGTGGCAAATAATGCTTTCATTTTGGCCGGTCGGCAAAAGTCAATTTTTTTGGATTTTTCAAAATTTGCAATTTTATTATTTAGAAGATTCGGGAAATCTCGCCCCAATGGCAAGCATCAGCTGATGAAGGAGCTTCTCGAAATCAAGGAACTCATTTTGAGCGAGGAGGCGAAAGAAGAACAAGATGCCGAAGGAAATAATCAATAATTAATTTATATTTTTGTCAGTAATTTTTGAATTTTATTTTCCTGTAACTAATGGTTGTGCTTAAAGATCTTGCCAAATAAATCATGTCTCCATATATGGTCGCTGGTGTCTTATCAGCAGTTTTTGCACTTCAGTTCAGGAAAATGACGGATTATAAACGGCAGGGGTGACGGAGGAAATAGTGCGTATAAATGGGACATTTGTTGGGGAACTGGAAAAATAACTAATGTTCTTATCAGTGAAAATTTACAATTTTTGGGGTTTTCTTTTTTTTTGTTGTTAAAAACTTACTTTTTTCAGAAAGTTTGATTTTTTAGGTACATATATTTCTAAAAATGGAGCAATGGAAAGTGATGGTACTAATTTGTCTATACGGCGCTGTTAAAGAATTCCGGCCCACTGAACCGTACATGTATGAATATCAGCATACAGTGTTGAATATGTCGGAGCACACGCTGAATAGTCAGGTAAGTGTGCAGTAGAGCGTATTTGCTTTTTTAACGCTC</canonical>
            <polymorphic>CAACGACGACGATTCAGATGACGTTTCTCTCCAAAACGCTGATGATCAAGCGGACGCCCAAGATATTTGCTTAATAATGGGGAATCCACCGAAGCTGAGCGACGTCATCGAGGAGTTCCTGGAACGTCTTCGCCCGATGAAACAGCTTGGATTCATTCGACCACAACGATCGGTTTACTGTCTCGTGTGTCTGAAATACGTCAAATCGTTCCATGAGTGCAATTGGAAGCATACGTTTAGCGAGGAGCGAATCGCTGAGATGTGGTATAGGTGAGGAGAGATGCCATGTGGCAAATAATGCTTTCATTTTGGCCGGTCGGCAAAAGTCAATTTTTTTGGATTTTTCAAAATTTGCAATTTTATTATTTAGAAGATTCGGGAAATCTCGCCCCAATGGCAAGCATCAGCTGATGAAGGAGCTTCTCGAAATCAAGGAACTCATTTTGAGCGAGGAGGCGAAAGAAGAACAAGATGCCGAAGGAAATAATCAATAATTAATKTATATTTTTGTCAGTAATTTTTGAATTTTATTTTCCTGTAACTAATGGTTGTGCTTAAAGATCTTGCCAAATAAATCATGTCTCCATATATGGTCGCTGGTGTCTTATCAGCAGTTTTTGCACTTCAGTTCAGGAAAATGACGGATTATAAACGGCAGGGGTGACGGAGGAAATAGTGCGTATAAATGGGACATTTGTTGGGGAACTGGAAAAATAACTAATGTTCTTATCAGTGAAAATTTACAATTTTTGGGGTTTTCTTTTTTTTTGTTGTTAAAAACTTACTTTTTTCAGAAAGTTTGATTTTTTAGGTACATATATTTCTAAAAATGGAGCAATGGAAAGTGATGGTACTAATTTGTCTATACGGCGCTGTTAAAGAATTCCGGCCCACTGAACCGTACATGTATGAATATCAGCATACAGTGTTGAATATGTCGGAGCACACGCTGAATAGTCAGGTAAGTGTGCAGTAGAGCGTATTTGCTTTTTTAACGCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>220 214 137 119 111 108 26 20 19 8 7 7 4</canonical_bands>
                <polymorphic_bands>220 214 137 119 111 108 26 23 20 8 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTATTTAGAAGATTCGGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAACTGCTGATAAGACACCAG</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>ATTATTTAGAAGATTCGGGAAATCTCGCCCCAATGGCAAGCATCAGCTGATGAAGGAGCTTCTCGAAATCAAGGAACTCATTTTGAGCGAGGAGGCGAAAGAAGAACAAGATGCCGAAGGAAATAATCAATAATTAATTTATATTTTTGTCAGTAATTTTTGAATTTTATTTTCCTGTAACTAATGGTTGTGCTTAAAGATCTTGCCAAATAAATCATGTCTCCATATATGGTCGCTGGTGTCTTATCAGCAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTATTTAGAAGATTCGGGAAATCTCGCCCCAATGGCAAGCATCAGCTGATGAAGGAGCTTCTCGAAATCAAGGAACTCATTTTGAGCGAGGAGGCGAAAGAAGAACAAGATGCCGAAGGAAATAATCAATAATTAATKTATATTTTTGTCAGTAATTTTTGAATTTTATTTTCCTGTAACTAATGGTTGTGCTTAAAGATCTTGCCAAATAAATCATGTCTCCATATATGGTCGCTGGTGTCTTATCAGCAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35060</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>405418</contig_pos>
        <strand>+</strand>
        <context>GGTTGTGCTT[A/G]AAGATCTTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGTCAGTAATTTTTGAATTTTATTTTCCTGTAACTAATGGTTGTGCTT</left_flank>
        <right_flank>AAGATCTTGCCAAATAAATCATGTCTCCATATATGGTCGCTGGTGTCTTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAGATATTTGCTTAATAATGGGGAATCCACCGAAGCTGAGCGACGTCATCGAGGAGTTCCTGGAACGTCTTCGCCCGATGAAACAGCTTGGATTCATTCGACCACAACGATCGGTTTACTGTCTCGTGTGTCTGAAATACGTCAAATCGTTCCATGAGTGCAATTGGAAGCATACGTTTAGCGAGGAGCGAATCGCTGAGATGTGGTATAGGTGAGGAGAGATGCCATGTGGCAAATAATGCTTTCATTTTGGCCGGTCGGCAAAAGTCAATTTTTTTGGATTTTTCAAAATTTGCAATTTTATTATTTAGAAGATTCGGGAAATCTCGCCCCAATGGCAAGCATCAGCTGATGAAGGAGCTTCTCGAAATCAAGGAACTCATTTTGAGCGAGGAGGCGAAAGAAGAACAAGATGCCGAAGGAAATAATCAATAATTAATTTATATTTTTGTCAGTAATTTTTGAATTTTATTTTCCTGTAACTAATGGTTGTGCTTAAAGATCTTGCCAAATAAATCATGTCTCCATATATGGTCGCTGGTGTCTTATCAGCAGTTTTTGCACTTCAGTTCAGGAAAATGACGGATTATAAACGGCAGGGGTGACGGAGGAAATAGTGCGTATAAATGGGACATTTGTTGGGGAACTGGAAAAATAACTAATGTTCTTATCAGTGAAAATTTACAATTTTTGGGGTTTTCTTTTTTTTTGTTGTTAAAAACTTACTTTTTTCAGAAAGTTTGATTTTTTAGGTACATATATTTCTAAAAATGGAGCAATGGAAAGTGATGGTACTAATTTGTCTATACGGCGCTGTTAAAGAATTCCGGCCCACTGAACCGTACATGTATGAATATCAGCATACAGTGTTGAATATGTCGGAGCACACGCTGAATAGTCAGGTAAGTGTGCAGTAGAGCGTATTTGCTTTTTTAACGCTCTACGCCACTAAATTCAAATTTGAAGCTGCAGAATTTTTGTTCGGCGGAGCGCGGTTG</canonical>
            <polymorphic>CCAAGATATTTGCTTAATAATGGGGAATCCACCGAAGCTGAGCGACGTCATCGAGGAGTTCCTGGAACGTCTTCGCCCGATGAAACAGCTTGGATTCATTCGACCACAACGATCGGTTTACTGTCTCGTGTGTCTGAAATACGTCAAATCGTTCCATGAGTGCAATTGGAAGCATACGTTTAGCGAGGAGCGAATCGCTGAGATGTGGTATAGGTGAGGAGAGATGCCATGTGGCAAATAATGCTTTCATTTTGGCCGGTCGGCAAAAGTCAATTTTTTTGGATTTTTCAAAATTTGCAATTTTATTATTTAGAAGATTCGGGAAATCTCGCCCCAATGGCAAGCATCAGCTGATGAAGGAGCTTCTCGAAATCAAGGAACTCATTTTGAGCGAGGAGGCGAAAGAAGAACAAGATGCCGAAGGAAATAATCAATAATTAATTTATATTTTTGTCAGTAATTTTTGAATTTTATTTTCCTGTAACTAATGGTTGTGCTTRAAGATCTTGCCAAATAAATCATGTCTCCATATATGGTCGCTGGTGTCTTATCAGCAGTTTTTGCACTTCAGTTCAGGAAAATGACGGATTATAAACGGCAGGGGTGACGGAGGAAATAGTGCGTATAAATGGGACATTTGTTGGGGAACTGGAAAAATAACTAATGTTCTTATCAGTGAAAATTTACAATTTTTGGGGTTTTCTTTTTTTTTGTTGTTAAAAACTTACTTTTTTCAGAAAGTTTGATTTTTTAGGTACATATATTTCTAAAAATGGAGCAATGGAAAGTGATGGTACTAATTTGTCTATACGGCGCTGTTAAAGAATTCCGGCCCACTGAACCGTACATGTATGAATATCAGCATACAGTGTTGAATATGTCGGAGCACACGCTGAATAGTCAGGTAAGTGTGCAGTAGAGCGTATTTGCTTTTTTAACGCTCTACGCCACTAAATTCAAATTTGAAGCTGCAGAATTTTTGTTCGGCGGAGCGCGGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>424 219 116 102 65 60 14</canonical_bands>
                <polymorphic_bands>424 279 116 102 65 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGCGAAAGAAGAACAAGAT</pcr_primer_p1>
		<pcr_primer_p2>CCAACAAATGTCCCATTTATAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGGCGAAAGAAGAACAAGATGCCGAAGGAAATAATCAATAATTAATTTATATTTTTGTCAGTAATTTTTGAATTTTATTTTCCTGTAACTAATGGTTGTGCTTAAAGATCTTGCCAAATAAATCATGTCTCCATATATGGTCGCTGGTGTCTTATCAGCAGTTTTTGCACTTCAGTTCAGGAAAATGACGGATTATAAACGGCAGGGGTGACGGAGGAAATAGTGCGTATAAATGGGACATTTGTTGG</canonical_amplicon>
		<polymorphic_amplicon>AGGCGAAAGAAGAACAAGATGCCGAAGGAAATAATCAATAATTAATTTATATTTTTGTCAGTAATTTTTGAATTTTATTTTCCTGTAACTAATGGTTGTGCTTRAAGATCTTGCCAAATAAATCATGTCTCCATATATGGTCGCTGGTGTCTTATCAGCAGTTTTTGCACTTCAGTTCAGGAAAATGACGGATTATAAACGGCAGGGGTGACGGAGGAAATAGTGCGTATAAATGGGACATTTGTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35061</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>405457</contig_pos>
        <strand>+</strand>
        <context>ATATATGGTC[A/G]CTGGTGTCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGTTGTGCTTAAAGATCTTGCCAAATAAATCATGTCTCCATATATGGTC</left_flank>
        <right_flank>CTGGTGTCTTATCAGCAGTTTTTGCACTTCAGTTCAGGAAAATGACGGAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCGACGTCATCGAGGAGTTCCTGGAACGTCTTCGCCCGATGAAACAGCTTGGATTCATTCGACCACAACGATCGGTTTACTGTCTCGTGTGTCTGAAATACGTCAAATCGTTCCATGAGTGCAATTGGAAGCATACGTTTAGCGAGGAGCGAATCGCTGAGATGTGGTATAGGTGAGGAGAGATGCCATGTGGCAAATAATGCTTTCATTTTGGCCGGTCGGCAAAAGTCAATTTTTTTGGATTTTTCAAAATTTGCAATTTTATTATTTAGAAGATTCGGGAAATCTCGCCCCAATGGCAAGCATCAGCTGATGAAGGAGCTTCTCGAAATCAAGGAACTCATTTTGAGCGAGGAGGCGAAAGAAGAACAAGATGCCGAAGGAAATAATCAATAATTAATTTATATTTTTGTCAGTAATTTTTGAATTTTATTTTCCTGTAACTAATGGTTGTGCTTAAAGATCTTGCCAAATAAATCATGTCTCCATATATGGTCGCTGGTGTCTTATCAGCAGTTTTTGCACTTCAGTTCAGGAAAATGACGGATTATAAACGGCAGGGGTGACGGAGGAAATAGTGCGTATAAATGGGACATTTGTTGGGGAACTGGAAAAATAACTAATGTTCTTATCAGTGAAAATTTACAATTTTTGGGGTTTTCTTTTTTTTTGTTGTTAAAAACTTACTTTTTTCAGAAAGTTTGATTTTTTAGGTACATATATTTCTAAAAATGGAGCAATGGAAAGTGATGGTACTAATTTGTCTATACGGCGCTGTTAAAGAATTCCGGCCCACTGAACCGTACATGTATGAATATCAGCATACAGTGTTGAATATGTCGGAGCACACGCTGAATAGTCAGGTAAGTGTGCAGTAGAGCGTATTTGCTTTTTTAACGCTCTACGCCACTAAATTCAAATTTGAAGCTGCAGAATTTTTGTTCGGCGGAGCGCGGTTGACGAATAAAAAAGTTTTTTGGCCGAATTTAGGTGATATT</canonical>
            <polymorphic>GAGCGACGTCATCGAGGAGTTCCTGGAACGTCTTCGCCCGATGAAACAGCTTGGATTCATTCGACCACAACGATCGGTTTACTGTCTCGTGTGTCTGAAATACGTCAAATCGTTCCATGAGTGCAATTGGAAGCATACGTTTAGCGAGGAGCGAATCGCTGAGATGTGGTATAGGTGAGGAGAGATGCCATGTGGCAAATAATGCTTTCATTTTGGCCGGTCGGCAAAAGTCAATTTTTTTGGATTTTTCAAAATTTGCAATTTTATTATTTAGAAGATTCGGGAAATCTCGCCCCAATGGCAAGCATCAGCTGATGAAGGAGCTTCTCGAAATCAAGGAACTCATTTTGAGCGAGGAGGCGAAAGAAGAACAAGATGCCGAAGGAAATAATCAATAATTAATTTATATTTTTGTCAGTAATTTTTGAATTTTATTTTCCTGTAACTAATGGTTGTGCTTAAAGATCTTGCCAAATAAATCATGTCTCCATATATGGTCRCTGGTGTCTTATCAGCAGTTTTTGCACTTCAGTTCAGGAAAATGACGGATTATAAACGGCAGGGGTGACGGAGGAAATAGTGCGTATAAATGGGACATTTGTTGGGGAACTGGAAAAATAACTAATGTTCTTATCAGTGAAAATTTACAATTTTTGGGGTTTTCTTTTTTTTTGTTGTTAAAAACTTACTTTTTTCAGAAAGTTTGATTTTTTAGGTACATATATTTCTAAAAATGGAGCAATGGAAAGTGATGGTACTAATTTGTCTATACGGCGCTGTTAAAGAATTCCGGCCCACTGAACCGTACATGTATGAATATCAGCATACAGTGTTGAATATGTCGGAGCACACGCTGAATAGTCAGGTAAGTGTGCAGTAGAGCGTATTTGCTTTTTTAACGCTCTACGCCACTAAATTCAAATTTGAAGCTGCAGAATTTTTGTTCGGCGGAGCGCGGTTGACGAATAAAAAAGTTTTTTGGCCGAATTTAGGTGATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGAATTTTATTTTCCTGTAAC</pcr_primer_p1>
		<pcr_primer_p2>AAGAAAACCCCAAAAATTGTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGAATTTTATTTTCCTGTAACTAATGGTTGTGCTTAAAGATCTTGCCAAATAAATCATGTCTCCATATATGGTCGCTGGTGTCTTATCAGCAGTTTTTGCACTTCAGTTCAGGAAAATGACGGATTATAAACGGCAGGGGTGACGGAGGAAATAGTGCGTATAAATGGGACATTTGTTGGGGAACTGGAAAAATAACTAATGTTCTTATCAGTGAAAATTTACAATTTTTGGGGTTTTCTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGAATTTTATTTTCCTGTAACTAATGGTTGTGCTTAAAGATCTTGCCAAATAAATCATGTCTCCATATATGGTCRCTGGTGTCTTATCAGCAGTTTTTGCACTTCAGTTCAGGAAAATGACGGATTATAAACGGCAGGGGTGACGGAGGAAATAGTGCGTATAAATGGGACATTTGTTGGGGAACTGGAAAAATAACTAATGTTCTTATCAGTGAAAATTTACAATTTTTGGGGTTTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35062</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>405511</contig_pos>
        <strand>+</strand>
        <context>GACGGATTAT[A/T]AACGGCAGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGTCTTATCAGCAGTTTTTGCACTTCAGTTCAGGAAAATGACGGATTAT</left_flank>
        <right_flank>AACGGCAGGGGTGACGGAGGAAATAGTGCGTATAAATGGGACATTTGTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCATTCGACCACAACGATCGGTTTACTGTCTCGTGTGTCTGAAATACGTCAAATCGTTCCATGAGTGCAATTGGAAGCATACGTTTAGCGAGGAGCGAATCGCTGAGATGTGGTATAGGTGAGGAGAGATGCCATGTGGCAAATAATGCTTTCATTTTGGCCGGTCGGCAAAAGTCAATTTTTTTGGATTTTTCAAAATTTGCAATTTTATTATTTAGAAGATTCGGGAAATCTCGCCCCAATGGCAAGCATCAGCTGATGAAGGAGCTTCTCGAAATCAAGGAACTCATTTTGAGCGAGGAGGCGAAAGAAGAACAAGATGCCGAAGGAAATAATCAATAATTAATTTATATTTTTGTCAGTAATTTTTGAATTTTATTTTCCTGTAACTAATGGTTGTGCTTAAAGATCTTGCCAAATAAATCATGTCTCCATATATGGTCGCTGGTGTCTTATCAGCAGTTTTTGCACTTCAGTTCAGGAAAATGACGGATTATAAACGGCAGGGGTGACGGAGGAAATAGTGCGTATAAATGGGACATTTGTTGGGGAACTGGAAAAATAACTAATGTTCTTATCAGTGAAAATTTACAATTTTTGGGGTTTTCTTTTTTTTTGTTGTTAAAAACTTACTTTTTTCAGAAAGTTTGATTTTTTAGGTACATATATTTCTAAAAATGGAGCAATGGAAAGTGATGGTACTAATTTGTCTATACGGCGCTGTTAAAGAATTCCGGCCCACTGAACCGTACATGTATGAATATCAGCATACAGTGTTGAATATGTCGGAGCACACGCTGAATAGTCAGGTAAGTGTGCAGTAGAGCGTATTTGCTTTTTTAACGCTCTACGCCACTAAATTCAAATTTGAAGCTGCAGAATTTTTGTTCGGCGGAGCGCGGTTGACGAATAAAAAAGTTTTTTGGCCGAATTTAGGTGATATTTAGATTTGTATTTAAATACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCAATCT</canonical>
            <polymorphic>ATTCATTCGACCACAACGATCGGTTTACTGTCTCGTGTGTCTGAAATACGTCAAATCGTTCCATGAGTGCAATTGGAAGCATACGTTTAGCGAGGAGCGAATCGCTGAGATGTGGTATAGGTGAGGAGAGATGCCATGTGGCAAATAATGCTTTCATTTTGGCCGGTCGGCAAAAGTCAATTTTTTTGGATTTTTCAAAATTTGCAATTTTATTATTTAGAAGATTCGGGAAATCTCGCCCCAATGGCAAGCATCAGCTGATGAAGGAGCTTCTCGAAATCAAGGAACTCATTTTGAGCGAGGAGGCGAAAGAAGAACAAGATGCCGAAGGAAATAATCAATAATTAATTTATATTTTTGTCAGTAATTTTTGAATTTTATTTTCCTGTAACTAATGGTTGTGCTTAAAGATCTTGCCAAATAAATCATGTCTCCATATATGGTCGCTGGTGTCTTATCAGCAGTTTTTGCACTTCAGTTCAGGAAAATGACGGATTATWAACGGCAGGGGTGACGGAGGAAATAGTGCGTATAAATGGGACATTTGTTGGGGAACTGGAAAAATAACTAATGTTCTTATCAGTGAAAATTTACAATTTTTGGGGTTTTCTTTTTTTTTGTTGTTAAAAACTTACTTTTTTCAGAAAGTTTGATTTTTTAGGTACATATATTTCTAAAAATGGAGCAATGGAAAGTGATGGTACTAATTTGTCTATACGGCGCTGTTAAAGAATTCCGGCCCACTGAACCGTACATGTATGAATATCAGCATACAGTGTTGAATATGTCGGAGCACACGCTGAATAGTCAGGTAAGTGTGCAGTAGAGCGTATTTGCTTTTTTAACGCTCTACGCCACTAAATTCAAATTTGAAGCTGCAGAATTTTTGTTCGGCGGAGCGCGGTTGACGAATAAAAAAGTTTTTTGGCCGAATTTAGGTGATATTTAGATTTGTATTTAAATACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCAATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGAATTTTATTTTCCTGTAAC</pcr_primer_p1>
		<pcr_primer_p2>AAGAAAACCCCAAAAATTGTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGAATTTTATTTTCCTGTAACTAATGGTTGTGCTTAAAGATCTTGCCAAATAAATCATGTCTCCATATATGGTCGCTGGTGTCTTATCAGCAGTTTTTGCACTTCAGTTCAGGAAAATGACGGATTATAAACGGCAGGGGTGACGGAGGAAATAGTGCGTATAAATGGGACATTTGTTGGGGAACTGGAAAAATAACTAATGTTCTTATCAGTGAAAATTTACAATTTTTGGGGTTTTCTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGAATTTTATTTTCCTGTAACTAATGGTTGTGCTTAAAGATCTTGCCAAATAAATCATGTCTCCATATATGGTCGCTGGTGTCTTATCAGCAGTTTTTGCACTTCAGTTCAGGAAAATGACGGATTATWAACGGCAGGGGTGACGGAGGAAATAGTGCGTATAAATGGGACATTTGTTGGGGAACTGGAAAAATAACTAATGTTCTTATCAGTGAAAATTTACAATTTTTGGGGTTTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35063</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>405526</contig_pos>
        <strand>+</strand>
        <context>GCAGGGGTGA[C/T]GGAGGAAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTGCACTTCAGTTCAGGAAAATGACGGATTATAAACGGCAGGGGTGA</left_flank>
        <right_flank>GGAGGAAATAGTGCGTATAAATGGGACATTTGTTGGGGAACTGGAAAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGATCGGTTTACTGTCTCGTGTGTCTGAAATACGTCAAATCGTTCCATGAGTGCAATTGGAAGCATACGTTTAGCGAGGAGCGAATCGCTGAGATGTGGTATAGGTGAGGAGAGATGCCATGTGGCAAATAATGCTTTCATTTTGGCCGGTCGGCAAAAGTCAATTTTTTTGGATTTTTCAAAATTTGCAATTTTATTATTTAGAAGATTCGGGAAATCTCGCCCCAATGGCAAGCATCAGCTGATGAAGGAGCTTCTCGAAATCAAGGAACTCATTTTGAGCGAGGAGGCGAAAGAAGAACAAGATGCCGAAGGAAATAATCAATAATTAATTTATATTTTTGTCAGTAATTTTTGAATTTTATTTTCCTGTAACTAATGGTTGTGCTTAAAGATCTTGCCAAATAAATCATGTCTCCATATATGGTCGCTGGTGTCTTATCAGCAGTTTTTGCACTTCAGTTCAGGAAAATGACGGATTATAAACGGCAGGGGTGACGGAGGAAATAGTGCGTATAAATGGGACATTTGTTGGGGAACTGGAAAAATAACTAATGTTCTTATCAGTGAAAATTTACAATTTTTGGGGTTTTCTTTTTTTTTGTTGTTAAAAACTTACTTTTTTCAGAAAGTTTGATTTTTTAGGTACATATATTTCTAAAAATGGAGCAATGGAAAGTGATGGTACTAATTTGTCTATACGGCGCTGTTAAAGAATTCCGGCCCACTGAACCGTACATGTATGAATATCAGCATACAGTGTTGAATATGTCGGAGCACACGCTGAATAGTCAGGTAAGTGTGCAGTAGAGCGTATTTGCTTTTTTAACGCTCTACGCCACTAAATTCAAATTTGAAGCTGCAGAATTTTTGTTCGGCGGAGCGCGGTTGACGAATAAAAAAGTTTTTTGGCCGAATTTAGGTGATATTTAGATTTGTATTTAAATACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCAATCTATTTTTTCAAATGTT</canonical>
            <polymorphic>ACGATCGGTTTACTGTCTCGTGTGTCTGAAATACGTCAAATCGTTCCATGAGTGCAATTGGAAGCATACGTTTAGCGAGGAGCGAATCGCTGAGATGTGGTATAGGTGAGGAGAGATGCCATGTGGCAAATAATGCTTTCATTTTGGCCGGTCGGCAAAAGTCAATTTTTTTGGATTTTTCAAAATTTGCAATTTTATTATTTAGAAGATTCGGGAAATCTCGCCCCAATGGCAAGCATCAGCTGATGAAGGAGCTTCTCGAAATCAAGGAACTCATTTTGAGCGAGGAGGCGAAAGAAGAACAAGATGCCGAAGGAAATAATCAATAATTAATTTATATTTTTGTCAGTAATTTTTGAATTTTATTTTCCTGTAACTAATGGTTGTGCTTAAAGATCTTGCCAAATAAATCATGTCTCCATATATGGTCGCTGGTGTCTTATCAGCAGTTTTTGCACTTCAGTTCAGGAAAATGACGGATTATAAACGGCAGGGGTGAYGGAGGAAATAGTGCGTATAAATGGGACATTTGTTGGGGAACTGGAAAAATAACTAATGTTCTTATCAGTGAAAATTTACAATTTTTGGGGTTTTCTTTTTTTTTGTTGTTAAAAACTTACTTTTTTCAGAAAGTTTGATTTTTTAGGTACATATATTTCTAAAAATGGAGCAATGGAAAGTGATGGTACTAATTTGTCTATACGGCGCTGTTAAAGAATTCCGGCCCACTGAACCGTACATGTATGAATATCAGCATACAGTGTTGAATATGTCGGAGCACACGCTGAATAGTCAGGTAAGTGTGCAGTAGAGCGTATTTGCTTTTTTAACGCTCTACGCCACTAAATTCAAATTTGAAGCTGCAGAATTTTTGTTCGGCGGAGCGCGGTTGACGAATAAAAAAGTTTTTTGGCCGAATTTAGGTGATATTTAGATTTGTATTTAAATACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCAATCTATTTTTTCAAATGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 372 123</canonical_bands>
                <polymorphic_bands>628 372</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAGTTTTTGCACTTCAGTT</pcr_primer_p1>
		<pcr_primer_p2>ATTAGTACCATCACTTTCCATTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCAGTTTTTGCACTTCAGTTCAGGAAAATGACGGATTATAAACGGCAGGGGTGACGGAGGAAATAGTGCGTATAAATGGGACATTTGTTGGGGAACTGGAAAAATAACTAATGTTCTTATCAGTGAAAATTTACAATTTTTGGGGTTTTCTTTTTTTTTGTTGTTAAAAACTTACTTTTTTCAGAAAGTTTGATTTTTTAGGTACATATATTTCTAAAAATGGAGCAATGGAAAGTGATGGTACTAAT</canonical_amplicon>
		<polymorphic_amplicon>GCAGTTTTTGCACTTCAGTTCAGGAAAATGACGGATTATAAACGGCAGGGGTGAYGGAGGAAATAGTGCGTATAAATGGGACATTTGTTGGGGAACTGGAAAAATAACTAATGTTCTTATCAGTGAAAATTTACAATTTTTGGGGTTTTCTTTTTTTTTGTTGTTAAAAACTTACTTTTTTCAGAAAGTTTGATTTTTTAGGTACATATATTTCTAAAAATGGAGCAATGGAAAGTGATGGTACTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35064</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>405585</contig_pos>
        <strand>+</strand>
        <context>ATAACTAATG[A/G]TCTTATCAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGTGCGTATAAATGGGACATTTGTTGGGGAACTGGAAAAATAACTAATG</left_flank>
        <right_flank>TCTTATCAGTGAAAATTTACAATTTTTGGGGTTTTCTTTTTTTTTGTTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAGCATACGTTTAGCGAGGAGCGAATCGCTGAGATGTGGTATAGGTGAGGAGAGATGCCATGTGGCAAATAATGCTTTCATTTTGGCCGGTCGGCAAAAGTCAATTTTTTTGGATTTTTCAAAATTTGCAATTTTATTATTTAGAAGATTCGGGAAATCTCGCCCCAATGGCAAGCATCAGCTGATGAAGGAGCTTCTCGAAATCAAGGAACTCATTTTGAGCGAGGAGGCGAAAGAAGAACAAGATGCCGAAGGAAATAATCAATAATTAATTTATATTTTTGTCAGTAATTTTTGAATTTTATTTTCCTGTAACTAATGGTTGTGCTTAAAGATCTTGCCAAATAAATCATGTCTCCATATATGGTCGCTGGTGTCTTATCAGCAGTTTTTGCACTTCAGTTCAGGAAAATGACGGATTATAAACGGCAGGGGTGACGGAGGAAATAGTGCGTATAAATGGGACATTTGTTGGGGAACTGGAAAAATAACTAATGTTCTTATCAGTGAAAATTTACAATTTTTGGGGTTTTCTTTTTTTTTGTTGTTAAAAACTTACTTTTTTCAGAAAGTTTGATTTTTTAGGTACATATATTTCTAAAAATGGAGCAATGGAAAGTGATGGTACTAATTTGTCTATACGGCGCTGTTAAAGAATTCCGGCCCACTGAACCGTACATGTATGAATATCAGCATACAGTGTTGAATATGTCGGAGCACACGCTGAATAGTCAGGTAAGTGTGCAGTAGAGCGTATTTGCTTTTTTAACGCTCTACGCCACTAAATTCAAATTTGAAGCTGCAGAATTTTTGTTCGGCGGAGCGCGGTTGACGAATAAAAAAGTTTTTTGGCCGAATTTAGGTGATATTTAGATTTGTATTTAAATACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCAATCTATTTTTTCAAATGTTCGTCGCTTCGTTTCTCACTTTTCCTAAATAAAAGGGGCAAGTATTATTGTTGTGCGAAA</canonical>
            <polymorphic>GGAAGCATACGTTTAGCGAGGAGCGAATCGCTGAGATGTGGTATAGGTGAGGAGAGATGCCATGTGGCAAATAATGCTTTCATTTTGGCCGGTCGGCAAAAGTCAATTTTTTTGGATTTTTCAAAATTTGCAATTTTATTATTTAGAAGATTCGGGAAATCTCGCCCCAATGGCAAGCATCAGCTGATGAAGGAGCTTCTCGAAATCAAGGAACTCATTTTGAGCGAGGAGGCGAAAGAAGAACAAGATGCCGAAGGAAATAATCAATAATTAATTTATATTTTTGTCAGTAATTTTTGAATTTTATTTTCCTGTAACTAATGGTTGTGCTTAAAGATCTTGCCAAATAAATCATGTCTCCATATATGGTCGCTGGTGTCTTATCAGCAGTTTTTGCACTTCAGTTCAGGAAAATGACGGATTATAAACGGCAGGGGTGACGGAGGAAATAGTGCGTATAAATGGGACATTTGTTGGGGAACTGGAAAAATAACTAATGRTCTTATCAGTGAAAATTTACAATTTTTGGGGTTTTCTTTTTTTTTGTTGTTAAAAACTTACTTTTTTCAGAAAGTTTGATTTTTTAGGTACATATATTTCTAAAAATGGAGCAATGGAAAGTGATGGTACTAATTTGTCTATACGGCGCTGTTAAAGAATTCCGGCCCACTGAACCGTACATGTATGAATATCAGCATACAGTGTTGAATATGTCGGAGCACACGCTGAATAGTCAGGTAAGTGTGCAGTAGAGCGTATTTGCTTTTTTAACGCTCTACGCCACTAAATTCAAATTTGAAGCTGCAGAATTTTTGTTCGGCGGAGCGCGGTTGACGAATAAAAAAGTTTTTTGGCCGAATTTAGGTGATATTTAGATTTGTATTTAAATACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCAATCTATTTTTTCAAATGTTCGTCGCTTCGTTTCTCACTTTTCCTAAATAAAAGGGGCAAGTATTATTGTTGTGCGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGTGCGTATAAATGGGACAT</pcr_primer_p1>
		<pcr_primer_p2>GATATTCATACATGTACGGTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATAGTGCGTATAAATGGGACATTTGTTGGGGAACTGGAAAAATAACTAATGTTCTTATCAGTGAAAATTTACAATTTTTGGGGTTTTCTTTTTTTTTGTTGTTAAAAACTTACTTTTTTCAGAAAGTTTGATTTTTTAGGTACATATATTTCTAAAAATGGAGCAATGGAAAGTGATGGTACTAATTTGTCTATACGGCGCTGTTAAAGAATTCCGGCCCACTGAACCGTACATGTATGAATATC</canonical_amplicon>
		<polymorphic_amplicon>ATAGTGCGTATAAATGGGACATTTGTTGGGGAACTGGAAAAATAACTAATGRTCTTATCAGTGAAAATTTACAATTTTTGGGGTTTTCTTTTTTTTTGTTGTTAAAAACTTACTTTTTTCAGAAAGTTTGATTTTTTAGGTACATATATTTCTAAAAATGGAGCAATGGAAAGTGATGGTACTAATTTGTCTATACGGCGCTGTTAAAGAATTCCGGCCCACTGAACCGTACATGTATGAATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35065</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>405680</contig_pos>
        <strand>+</strand>
        <context>TAGGTACATA[G/T]ATTTCTAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTTGTTAAAAACTTACTTTTTTCAGAAAGTTTGATTTTTTAGGTACATA</left_flank>
        <right_flank>ATTTCTAAAAATGGAGCAATGGAAAGTGATGGTACTAATTTGTCTATACG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAAAAGTCAATTTTTTTGGATTTTTCAAAATTTGCAATTTTATTATTTAGAAGATTCGGGAAATCTCGCCCCAATGGCAAGCATCAGCTGATGAAGGAGCTTCTCGAAATCAAGGAACTCATTTTGAGCGAGGAGGCGAAAGAAGAACAAGATGCCGAAGGAAATAATCAATAATTAATTTATATTTTTGTCAGTAATTTTTGAATTTTATTTTCCTGTAACTAATGGTTGTGCTTAAAGATCTTGCCAAATAAATCATGTCTCCATATATGGTCGCTGGTGTCTTATCAGCAGTTTTTGCACTTCAGTTCAGGAAAATGACGGATTATAAACGGCAGGGGTGACGGAGGAAATAGTGCGTATAAATGGGACATTTGTTGGGGAACTGGAAAAATAACTAATGTTCTTATCAGTGAAAATTTACAATTTTTGGGGTTTTCTTTTTTTTTGTTGTTAAAAACTTACTTTTTTCAGAAAGTTTGATTTTTTAGGTACATATATTTCTAAAAATGGAGCAATGGAAAGTGATGGTACTAATTTGTCTATACGGCGCTGTTAAAGAATTCCGGCCCACTGAACCGTACATGTATGAATATCAGCATACAGTGTTGAATATGTCGGAGCACACGCTGAATAGTCAGGTAAGTGTGCAGTAGAGCGTATTTGCTTTTTTAACGCTCTACGCCACTAAATTCAAATTTGAAGCTGCAGAATTTTTGTTCGGCGGAGCGCGGTTGACGAATAAAAAAGTTTTTTGGCCGAATTTAGGTGATATTTAGATTTGTATTTAAATACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCAATCTATTTTTTCAAATGTTCGTCGCTTCGTTTCTCACTTTTCCTAAATAAAAGGGGCAAGTATTATTGTTGTGCGAAAAAATTGGAGTCGAGACGCAGACAGTCGAACAAAAAATGTATCTGCGTCTCCACCGAGTATGTGCTATTTAGGCTTGCCGCTTCGCGGTGCATACC</canonical>
            <polymorphic>GCAAAAGTCAATTTTTTTGGATTTTTCAAAATTTGCAATTTTATTATTTAGAAGATTCGGGAAATCTCGCCCCAATGGCAAGCATCAGCTGATGAAGGAGCTTCTCGAAATCAAGGAACTCATTTTGAGCGAGGAGGCGAAAGAAGAACAAGATGCCGAAGGAAATAATCAATAATTAATTTATATTTTTGTCAGTAATTTTTGAATTTTATTTTCCTGTAACTAATGGTTGTGCTTAAAGATCTTGCCAAATAAATCATGTCTCCATATATGGTCGCTGGTGTCTTATCAGCAGTTTTTGCACTTCAGTTCAGGAAAATGACGGATTATAAACGGCAGGGGTGACGGAGGAAATAGTGCGTATAAATGGGACATTTGTTGGGGAACTGGAAAAATAACTAATGTTCTTATCAGTGAAAATTTACAATTTTTGGGGTTTTCTTTTTTTTTGTTGTTAAAAACTTACTTTTTTCAGAAAGTTTGATTTTTTAGGTACATAKATTTCTAAAAATGGAGCAATGGAAAGTGATGGTACTAATTTGTCTATACGGCGCTGTTAAAGAATTCCGGCCCACTGAACCGTACATGTATGAATATCAGCATACAGTGTTGAATATGTCGGAGCACACGCTGAATAGTCAGGTAAGTGTGCAGTAGAGCGTATTTGCTTTTTTAACGCTCTACGCCACTAAATTCAAATTTGAAGCTGCAGAATTTTTGTTCGGCGGAGCGCGGTTGACGAATAAAAAAGTTTTTTGGCCGAATTTAGGTGATATTTAGATTTGTATTTAAATACCAGCAAGCTGGTGCGCCTTCGGCGCGATTCAATCTATTTTTTCAAATGTTCGTCGCTTCGTTTCTCACTTTTCCTAAATAAAAGGGGCAAGTATTATTGTTGTGCGAAAAAATTGGAGTCGAGACGCAGACAGTCGAACAAAAAATGTATCTGCGTCTCCACCGAGTATGTGCTATTTAGGCTTGCCGCTTCGCGGTGCATACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTACAATTTTTGGGGTTTT</pcr_primer_p1>
		<pcr_primer_p2>AATACGCTCTACTGCACACTTAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATTTACAATTTTTGGGGTTTTCTTTTTTTTTGTTGTTAAAAACTTACTTTTTTCAGAAAGTTTGATTTTTTAGGTACATATATTTCTAAAAATGGAGCAATGGAAAGTGATGGTACTAATTTGTCTATACGGCGCTGTTAAAGAATTCCGGCCCACTGAACCGTACATGTATGAATATCAGCATACAGTGTTGAATATGTCGGAGCACACGCTGAATAGTCAGGTAAGTGTGCAGTAGAGCGTATT</canonical_amplicon>
		<polymorphic_amplicon>AATTTACAATTTTTGGGGTTTTCTTTTTTTTTGTTGTTAAAAACTTACTTTTTTCAGAAAGTTTGATTTTTTAGGTACATAKATTTCTAAAAATGGAGCAATGGAAAGTGATGGTACTAATTTGTCTATACGGCGCTGTTAAAGAATTCCGGCCCACTGAACCGTACATGTATGAATATCAGCATACAGTGTTGAATATGTCGGAGCACACGCTGAATAGTCAGGTAAGTGTGCAGTAGAGCGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35066</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>440729</contig_pos>
        <strand></strand>
        <context>GGTACTTAAT[C/T]CTTGTGGATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCTGCTGGTATAGTCCGATGTTTGGAATTCAGTTGCCTAGGTACTTAAT</left_flank>
        <right_flank>CTTGTGGATTTTCGTTAGAAATTTGGTTTTAGAAGTTTCAACTACTTCGA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTATGCCGTAAGTGCTTGAAGTTCTTTGGAGTAACGCTAAAGTTGCCACTCCAGATTTGCTACTTTCCGGGACAGGCCAATATGGAGATCCGAGAATACATTCGTGAGGAATTTCGAAAGATCTACGGAAACGACTCGATGGACTTTAACATTCTGGGTGCTCTTTTCAATGAGGGGTCCGATGAAACTAGATTCAGATCTTGGTTGGCTGTCTTGCTTTGGACTGGCGTCTCTACCGTATCCATCATAATGTTTTTCGCATTGGCGATTACTGTAAGTTACATTATGATAAGTATTTTTAACACAAGATGTTTACAGATAGTGACACATTTGAAGAATATGACGAGAAGCGCAAGCAAAAAGACTTCCAAGTTCCAAGTCGACCTGCTTCGAGCTCTTGTTGTCCAAACGATTATCCCCATTGTTATTAGCTTCTCTCCGTGTCTTCTCTGCTGGTATAGTCCGATGTTTGGAATTCAGTTGCCTAGGTACTTAATCCTTGTGGATTTTCGTTAGAAATTTGGTTTTAGAAGTTTCAACTACTTCGAAGCCAGCGCTTTGGGAGTCTTTGCTTTTGTGGATCCGGTGGCTATCACTTTGAGCCTTCCGATTTTTCGTAAACGAATCTTCTTAGTCTGTCGTCATCCAACTACGATGTTTACGGCGGGAAAGTCCAGTACGGACCATGCCACTCATTGAAAAAATGTTGAATTTTGATACCTGTTTGGAGAATAAACGTTTCTAAAAGCTAACTTATTTTGAAAGCGATTTTTAAGGCGGACTTCAACTCCTCTTTTAAGATGTATCCTCGGCATAGAGCGGCGCGGAACTCTTATCACTGTAACAACATGTCCTAAAAGACTTCTTAGGCGAATTTAATGAGAAACATCAAAAGAAAAATTAATTTCATAATCTAAGTGTGTCTGCATGTAGCAGTCATGGGATTCCGTTATTTTCTCTCTATAAAAACACCGCGCACAAAAACAAATCCATCTATT</canonical>
            <polymorphic>TGGTATGCCGTAAGTGCTTGAAGTTCTTTGGAGTAACGCTAAAGTTGCCACTCCAGATTTGCTACTTTCCGGGACAGGCCAATATGGAGATCCGAGAATACATTCGTGAGGAATTTCGAAAGATCTACGGAAACGACTCGATGGACTTTAACATTCTGGGTGCTCTTTTCAATGAGGGGTCCGATGAAACTAGATTCAGATCTTGGTTGGCTGTCTTGCTTTGGACTGGCGTCTCTACCGTATCCATCATAATGTTTTTCGCATTGGCGATTACTGTAAGTTACATTATGATAAGTATTTTTAACACAAGATGTTTACAGATAGTGACACATTTGAAGAATATGACGAGAAGCGCAAGCAAAAAGACTTCCAAGTTCCAAGTCGACCTGCTTCGAGCTCTTGTTGTCCAAACGATTATCCCCATTGTTATTAGCTTCTCTCCGTGTCTTCTCTGCTGGTATAGTCCGATGTTTGGAATTCAGTTGCCTAGGTACTTAATYCTTGTGGATTTTCGTTAGAAATTTGGTTTTAGAAGTTTCAACTACTTCGAAGCCAGCGCTTTGGGAGTCTTTGCTTTTGTGGATCCGGTGGCTATCACTTTGAGCCTTCCGATTTTTCGTAAACGAATCTTCTTAGTCTGTCGTCATCCAACTACGATGTTTACGGCGGGAAAGTCCAGTACGGACCATGCCACTCATTGAAAAAATGTTGAATTTTGATACCTGTTTGGAGAATAAACGTTTCTAAAAGCTAACTTATTTTGAAAGCGATTTTTAAGGCGGACTTCAACTCCTCTTTTAAGATGTATCCTCGGCATAGAGCGGCGCGGAACTCTTATCACTGTAACAACATGTCCTAAAAGACTTCTTAGGCGAATTTAATGAGAAACATCAAAAGAAAAATTAATTTCATAATCTAAGTGTGTCTGCATGTAGCAGTCATGGGATTCCGTTATTTTCTCTCTATAAAAACACCGCGCACAAAAACAAATCCATCTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGATTATCCCCATTGTTATTA</pcr_primer_p1>
		<pcr_primer_p2>GTAGTTGGATGACGACAGACTAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACGATTATCCCCATTGTTATTAGCTTCTCTCCGTGTCTTCTCTGCTGGTATAGTCCGATGTTTGGAATTCAGTTGCCTAGGTACTTAATCCTTGTGGATTTTCGTTAGAAATTTGGTTTTAGAAGTTTCAACTACTTCGAAGCCAGCGCTTTGGGAGTCTTTGCTTTTGTGGATCCGGTGGCTATCACTTTGAGCCTTCCGATTTTTCGTAAACGAATCTTCTTAGTCTGTCGTCATCCAACTAC</canonical_amplicon>
		<polymorphic_amplicon>ACGATTATCCCCATTGTTATTAGCTTCTCTCCGTGTCTTCTCTGCTGGTATAGTCCGATGTTTGGAATTCAGTTGCCTAGGTACTTAATYCTTGTGGATTTTCGTTAGAAATTTGGTTTTAGAAGTTTCAACTACTTCGAAGCCAGCGCTTTGGGAGTCTTTGCTTTTGTGGATCCGGTGGCTATCACTTTGAGCCTTCCGATTTTTCGTAAACGAATCTTCTTAGTCTGTCGTCATCCAACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35067</snp_id>
        <super_contig>c009601072.Contig1</super_contig>
        <contig_pos>444151</contig_pos>
        <strand>+</strand>
        <context>GAAAAGTTTG[C/G]AAAACGGTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGGACCAAACACAGTGTGTGTTTTTCGACAGACATTTTTAGAAAAGTTTG</left_flank>
        <right_flank>AAAACGGTTAATTAAAAAAAATTTTCAAACGTTCGGTCCACTAAACTGGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAATTTTGATGTATTTCTTAATTACTCATTTGGTGAGCCATTTTTCCACTTTTCTAGTGAAATCTAACGTTTTTAGATAACTAAAAAACTGAACGAAATTTCAACACAATCTAGTAAAAAATCCGCAAAATTCCAATTCGAACTTCTTCGAGCGTTAGTTATCCAAACATTTATTCCAATTGTTGTTAGCTTTTTTCCATGTCTACTTTGCTGGTTTACTCCAATGTTTGGAATCAAGTTAGCGAGGTTTCTGGATTCTTTTATCGTTCCAATTTTGTATCCATCTTTTTCAGAGAATTCAACTATGTGGAGGTTATTGCTCTCGGGTTGTTCGCCTTCGTGGACCCGATCGCTATTATCTTGTGTGTTCCTGTTTTTCGAAAACGTTTTTATCGTAAATTTTCTGTTACTGATACTGTTTATAAGCAGTAAAAACTATGAATATCTGTGGACCAAACACAGTGTGTGTTTTTCGACAGACATTTTTAGAAAAGTTTGCAAAACGGTTAATTAAAAAAAATTTTCAAACGTTCGGTCCACTAAACTGGGCACATTGCGTTATTTCGGAGTGTCGTAGTATTTTTCGGGGGATTTTTTGAGTAATATTCACCAGATATGTTGCCTTGCCCATTCGGTTGCCTAGAATACTCAAAGGTTAGGCCACCATGTTAAAATGACATAGAAAACTTGCCTGGCGAATGTTAGGTCACTATGTTAAAATGAACTAGAAATCACAATAGGTCCGTTTTAGGTCATTTCTTGGCCACAAGAGTTGGTGACCTCGAATAATCAACTTGCGAAAGTTAGGCCATCATGTTACTACAACCTAGAAAACACACAAAGTGAATATCAGGTCATATCTAGTTCATAAAAGTTGGTGGCCTAGAAAAATCAACTTGATAAAGTTAGGTCACTCTATTCCACACATGAAACCGGAGTTTGTGATTAACGACATCCATCAGAAAAAAAAATTTAGAAATTAGGTTGACTCCATTTCCC</canonical>
            <polymorphic>TCAATTTTGATGTATTTCTTAATTACTCATTTGGTGAGCCATTTTTCCACTTTTCTAGTGAAATCTAACGTTTTTAGATAACTAAAAAACTGAACGAAATTTCAACACAATCTAGTAAAAAATCCGCAAAATTCCAATTCGAACTTCTTCGAGCGTTAGTTATCCAAACATTTATTCCAATTGTTGTTAGCTTTTTTCCATGTCTACTTTGCTGGTTTACTCCAATGTTTGGAATCAAGTTAGCGAGGTTTCTGGATTCTTTTATCGTTCCAATTTTGTATCCATCTTTTTCAGAGAATTCAACTATGTGGAGGTTATTGCTCTCGGGTTGTTCGCCTTCGTGGACCCGATCGCTATTATCTTGTGTGTTCCTGTTTTTCGAAAACGTTTTTATCGTAAATTTTCTGTTACTGATACTGTTTATAAGCAGTAAAAACTATGAATATCTGTGGACCAAACACAGTGTGTGTTTTTCGACAGACATTTTTAGAAAAGTTTGSAAAACGGTTAATTAAAAAAAATTTTCAAACGTTCGGTCCACTAAACTGGGCACATTGCGTTATTTCGGAGTGTCGTAGTATTTTTCGGGGGATTTTTTGAGTAATATTCACCAGATATGTTGCCTTGCCCATTCGGTTGCCTAGAATACTCAAAGGTTAGGCCACCATGTTAAAATGACATAGAAAACTTGCCTGGCGAATGTTAGGTCACTATGTTAAAATGAACTAGAAATCACAATAGGTCCGTTTTAGGTCATTTCTTGGCCACAAGAGTTGGTGACCTCGAATAATCAACTTGCGAAAGTTAGGCCATCATGTTACTACAACCTAGAAAACACACAAAGTGAATATCAGGTCATATCTAGTTCATAAAAGTTGGTGGCCTAGAAAAATCAACTTGATAAAGTTAGGTCACTCTATTCCACACATGAAACCGGAGTTTGTGATTAACGACATCCATCAGAAAAAAAAATTTAGAAATTAGGTTGACTCCATTTCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCGCTATTATCTTGTGTGTTC</pcr_primer_p1>
		<pcr_primer_p2>AAATCCCCCGAAAAATACTAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GATCGCTATTATCTTGTGTGTTCCTGTTTTTCGAAAACGTTTTTATCGTAAATTTTCTGTTACTGATACTGTTTATAAGCAGTAAAAACTATGAATATCTGTGGACCAAACACAGTGTGTGTTTTTCGACAGACATTTTTAGAAAAGTTTGCAAAACGGTTAATTAAAAAAAATTTTCAAACGTTCGGTCCACTAAACTGGGCACATTGCGTTATTTCGGAGTGTCGTAGTATTTTTCGGGGGATTT</canonical_amplicon>
		<polymorphic_amplicon>GATCGCTATTATCTTGTGTGTTCCTGTTTTTCGAAAACGTTTTTATCGTAAATTTTCTGTTACTGATACTGTTTATAAGCAGTAAAAACTATGAATATCTGTGGACCAAACACAGTGTGTGTTTTTCGACAGACATTTTTAGAAAAGTTTGSAAAACGGTTAATTAAAAAAAATTTTCAAACGTTCGGTCCACTAAACTGGGCACATTGCGTTATTTCGGAGTGTCGTAGTATTTTTCGGGGGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35068</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>2429</contig_pos>
        <strand></strand>
        <context>AAATCAAAAT[G/T]TTAGGAATCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAACTTTGGAAATTGAAATCTGAAAATCGAAAAAAACCGGAAATCAAAAT</left_flank>
        <right_flank>TTAGGAATCCGAAAATTAAAAAAAAAGGCGAAAACAGGGCTGGGCGAGCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAACTAGTGTGAGTTTTGAAAAAGAAGCTTTAACTTTGAATTCAGAATACAAAGTTTTTCAGATTCGTCACCAGAAGACTATCCGTATTCTTCATCGTTCTATTAGAGGTTTTACGGTAAATACAATACAATACAAAAATTTGAATTTCGGAAAATTCAAAAATCCCAAAAATGCCAAAAAATAGAAAAATTCAGGAATTCAGAAAAAAATTTTGGTCTGAAATATTTTGTAATTCTAGCCTTTGAATTATTGAATCAGACAAGCTAACAAACCCAAAATTTATTCACTTCCCTGGAGAAAATATATGGGTTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGCTCCTTTCGGAGGGCCCTTTTATTAGAGGGGCCCTTCTAATACAGGCTTTACGATTCAGGGATTGTTAAAAAAATAGTTCATTCCAAAAAAACCAAAAACTCAAAACTTTGGAAATTGAAATCTGAAAATCGAAAAAAACCGGAAATCAAAATGTTAGGAATCCGAAAATTAAAAAAAAAGGCGAAAACAGGGCTGGGCGAGCAATCGGATTCGTGGAAAACGAAATGCAAAACACACGCAATTCGAGAAAAAAAGTGGTCGGAGCCATCGCACACACAAAGTATAGTGGACGGCGGAACCCGGGAAGTGTCGGCCGCTGCGAAGAGCGACTAGCCGGCGGCGCGTAGTTGAAAAATAAATCAAACTTCAAATTCCCGCCAGTTTCGTGTCGATACCCGTCGGCGAAATTGCGTGCGCCTTTCATCTCGAATGGCACAACAAGCGCAGAAAATTTGCAAAACGTGAAGGTTTTTCTCCCGTCCTTACCCACCCCTGGGCGAAAATCAGAAAAATTCAAACAAAACTCAATAAACTTTATTGAAATTTTTCAATAAAAAGTTGGCGTTTTGAAGTAGATGATTGATATTTGGATGGTTCCATTTATGAAGCAGGGGCTCCTGGAGCCGGAGCCGGAGCAGCTGGAGCACTTGGAG</canonical>
            <polymorphic>ATAAACTAGTGTGAGTTTTGAAAAAGAAGCTTTAACTTTGAATTCAGAATACAAAGTTTTTCAGATTCGTCACCAGAAGACTATCCGTATTCTTCATCGTTCTATTAGAGGTTTTACGGTAAATACAATACAATACAAAAATTTGAATTTCGGAAAATTCAAAAATCCCAAAAATGCCAAAAAATAGAAAAATTCAGGAATTCAGAAAAAAATTTTGGTCTGAAATATTTTGTAATTCTAGCCTTTGAATTATTGAATCAGACAAGCTAACAAACCCAAAATTTATTCACTTCCCTGGAGAAAATATATGGGTTATTAGAAGGGCCGGCCCTTCTATTGTTCCAAGCTCCTTTCGGAGGGCCCTTTTATTAGAGGGGCCCTTCTAATACAGGCTTTACGATTCAGGGATTGTTAAAAAAATAGTTCATTCCAAAAAAACCAAAAACTCAAAACTTTGGAAATTGAAATCTGAAAATCGAAAAAAACCGGAAATCAAAATKTTAGGAATCCGAAAATTAAAAAAAAAGGCGAAAACAGGGCTGGGCGAGCAATCGGATTCGTGGAAAACGAAATGCAAAACACACGCAATTCGAGAAAAAAAGTGGTCGGAGCCATCGCACACACAAAGTATAGTGGACGGCGGAACCCGGGAAGTGTCGGCCGCTGCGAAGAGCGACTAGCCGGCGGCGCGTAGTTGAAAAATAAATCAAACTTCAAATTCCCGCCAGTTTCGTGTCGATACCCGTCGGCGAAATTGCGTGCGCCTTTCATCTCGAATGGCACAACAAGCGCAGAAAATTTGCAAAACGTGAAGGTTTTTCTCCCGTCCTTACCCACCCCTGGGCGAAAATCAGAAAAATTCAAACAAAACTCAATAAACTTTATTGAAATTTTTCAATAAAAAGTTGGCGTTTTGAAGTAGATGATTGATATTTGGATGGTTCCATTTATGAAGCAGGGGCTCCTGGAGCCGGAGCCGGAGCAGCTGGAGCACTTGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAACTTTGGAAATTGAAATC</pcr_primer_p1>
		<pcr_primer_p2>GAGTTTTGTTTGAATTTTTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>426</pcr_amplicon_size>
		<canonical_amplicon>CAAAACTTTGGAAATTGAAATCTGAAAATCGAAAAAAACCGGAAATCAAAATGTTAGGAATCCGAAAATTAAAAAAAAAGGCGAAAACAGGGCTGGGCGAGCAATCGGATTCGTGGAAAACGAAATGCAAAACACACGCAATTCGAGAAAAAAAGTGGTCGGAGCCATCGCACACACAAAGTATAGTGGACGGCGGAACCCGGGAAGTGTCGGCCGCTGCGAAGAGCGACTAGCCGGCGGCGCGTAGTTGAAAAATAAATCAAACTTCAAATTCCCGCCAGTTTCGTGTCGATACCCGTCGGCGAAATTGCGTGCGCCTTTCATCTCGAATGGCACAACAAGCGCAGAAAATTTGCAAAACGTGAAGGTTTTTCTCCCGTCCTTACCCACCCCTGGGCGAAAATCAGAAAAATTCAAACAAAACTC</canonical_amplicon>
		<polymorphic_amplicon>CAAAACTTTGGAAATTGAAATCTGAAAATCGAAAAAAACCGGAAATCAAAATKTTAGGAATCCGAAAATTAAAAAAAAAGGCGAAAACAGGGCTGGGCGAGCAATCGGATTCGTGGAAAACGAAATGCAAAACACACGCAATTCGAGAAAAAAAGTGGTCGGAGCCATCGCACACACAAAGTATAGTGGACGGCGGAACCCGGGAAGTGTCGGCCGCTGCGAAGAGCGACTAGCCGGCGGCGCGTAGTTGAAAAATAAATCAAACTTCAAATTCCCGCCAGTTTCGTGTCGATACCCGTCGGCGAAATTGCGTGCGCCTTTCATCTCGAATGGCACAACAAGCGCAGAAAATTTGCAAAACGTGAAGGTTTTTCTCCCGTCCTTACCCACCCCTGGGCGAAAATCAGAAAAATTCAAACAAAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35070</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>229410</contig_pos>
        <strand></strand>
        <context>tatttttcag[C/G]tattttcagc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAG</left_flank>
        <right_flank>TATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGACTCCATCAGTGGATTCCACCCATCGATATTTTTGATTCGAACCGGTGCATTATTGGCCAACAACATCGCAATCGCTTCTCGATGTCCCAACATTGTGGCGATGTGCAGAGCCGTGTTTCCGTGCATATCCTTCTCGGATAGACTCCTTCCAGCGCGTAGTAACTGCAAAAATAGTGAATTTCGGAGGTTATTGGGTCAGAAATAGGCATTTTTCAGTGATTTTCAGCAATTTTCAGCCAGAAAATGCCCTTAGGAGCTTTCTGGATCAACACAGTTCATTTCACCCGTTTTTAAGCTATTCTCAAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCC</canonical>
            <polymorphic>CCGACTCCATCAGTGGATTCCACCCATCGATATTTTTGATTCGAACCGGTGCATTATTGGCCAACAACATCGCAATCGCTTCTCGATGTCCCAACATTGTGGCGATGTGCAGAGCCGTGTTTCCGTGCATATCCTTCTCGGATAGACTCCTTCCAGCGCGTAGTAACTGCAAAAATAGTGAATTTCGGAGGTTATTGGGTCAGAAATAGGCATTTTTCAGTGATTTTCAGCAATTTTCAGCCAGAAAATGCCCTTAGGAGCTTTCTGGATCAACACAGTTCATTTCACCCGTTTTTAAGCTATTCTCAAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGSTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>260 108 71 61 53 40 39 39 34 32 32 31 31 22 22 14 11 11 11 11 11 11 10 10 10 8 7</canonical_bands>
                <polymorphic_bands>260 108 71 61 53 44 40 39 39 32 32 31 31 22 22 14 11 11 11 11 11 11 10 10 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>126 86 60 54 44 39 32 32 31 31 29 29 29 23 22 21 20 20 20 19 14 13 11 11 11 11 11 11 11 11 11 11 11 11 11 10 10 10 9 9 8 7</canonical_bands>
                <polymorphic_bands>126 86 60 54 44 39 33 32 32 31 31 29 29 29 22 21 20 20 20 19 14 13 11 11 11 11 11 11 11 11 11 11 11 11 11 10 10 9 9 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTCCATAGTCAAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>CAATAATAGCCGAGAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>973</pcr_amplicon_size>
		<canonical_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCT</canonical_amplicon>
		<polymorphic_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGSTATTTTCAGCTATTTTCCAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35071</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>229606</contig_pos>
        <strand>+</strand>
        <context>gaagcttcca[A/T]ggtyaaaaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCA</left_flank>
        <right_flank>GGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGTCAGAAATAGGCATTTTTCAGTGATTTTCAGCAATTTTCAGCCAGAAAATGCCCTTAGGAGCTTTCTGGATCAACACAGTTCATTTCACCCGTTTTTAAGCTATTCTCAAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTT</canonical>
            <polymorphic>GGGTCAGAAATAGGCATTTTTCAGTGATTTTCAGCAATTTTCAGCCAGAAAATGCCCTTAGGAGCTTTCTGGATCAACACAGTTCATTTCACCCGTTTTTAAGCTATTCTCAAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAWGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTCCATAGTCAAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>CAATAATAGCCGAGAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>973</pcr_amplicon_size>
		<canonical_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAG</canonical_amplicon>
		<polymorphic_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAWGGTTAAAAATAGTCATTTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35072</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>229610</contig_pos>
        <strand>+</strand>
        <context>cttccawggt[C/T]aaaaatagtc</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGT</left_flank>
        <right_flank>AAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAAATAGGCATTTTTCAGTGATTTTCAGCAATTTTCAGCCAGAAAATGCCCTTAGGAGCTTTCTGGATCAACACAGTTCATTTCACCCGTTTTTAAGCTATTCTCAAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTT</canonical>
            <polymorphic>CAGAAATAGGCATTTTTCAGTGATTTTCAGCAATTTTCAGCCAGAAAATGCCCTTAGGAGCTTTCTGGATCAACACAGTTCATTTCACCCGTTTTTAAGCTATTCTCAAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTYAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>446 404 95 55</canonical_bands>
                <polymorphic_bands>459 446 95</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTCCATAGTCAAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>CAATAATAGCCGAGAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>973</pcr_amplicon_size>
		<canonical_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAA</canonical_amplicon>
		<polymorphic_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTYAAAAATAGTCATTTTCAGCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35073</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>229629</contig_pos>
        <strand>+</strand>
        <context>tcattttcag[C/T]caattttttc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAG</left_flank>
        <right_flank>CAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGATTTTCAGCAATTTTCAGCCAGAAAATGCCCTTAGGAGCTTTCTGGATCAACACAGTTCATTTCACCCGTTTTTAAGCTATTCTCAAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCAT</canonical>
            <polymorphic>GTGATTTTCAGCAATTTTCAGCCAGAAAATGCCCTTAGGAGCTTTCTGGATCAACACAGTTCATTTCACCCGTTTTTAAGCTATTCTCAAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGYCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>86 54 44 42 39 36 32 32 31 31 29 29 29 23 22 22 22 21 21 21 20 20 20 19 14 13 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 10 10 10 9 9 8 7</canonical_bands>
                <polymorphic_bands>86 54 44 42 42 39 36 32 32 31 31 29 29 23 22 22 22 21 21 21 20 20 20 19 14 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 10 10 10 9 9 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTCCATAGTCAAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>CAATAATAGCCGAGAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>973</pcr_amplicon_size>
		<canonical_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGYCAATTTTTTCAGCCAGAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35074</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>229645</contig_pos>
        <strand>+</strand>
        <context>ttttcagcca[A/G]aaaaacctyy</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCA</left_flank>
        <right_flank>AAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAGCCAGAAAATGCCCTTAGGAGCTTTCTGGATCAACACAGTTCATTTCACCCGTTTTTAAGCTATTCTCAAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTT</canonical>
            <polymorphic>TTCAGCCAGAAAATGCCCTTAGGAGCTTTCTGGATCAACACAGTTCATTTCACCCGTTTTTAAGCTATTCTCAAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCARAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTCCATAGTCAAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>CAATAATAGCCGAGAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>973</pcr_amplicon_size>
		<canonical_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAA</canonical_amplicon>
		<polymorphic_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCARAAAAACCTTTAGATGCTCTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35075</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>229654</contig_pos>
        <strand>+</strand>
        <context>araaaaacct[C/T]yagatgctct</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCT</left_flank>
        <right_flank>TAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATGCCCTTAGGAGCTTTCTGGATCAACACAGTTCATTTCACCCGTTTTTAAGCTATTCTCAAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTT</canonical>
            <polymorphic>AAAATGCCCTTAGGAGCTTTCTGGATCAACACAGTTCATTTCACCCGTTTTTAAGCTATTCTCAAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTYTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTCCATAGTCAAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>CAATAATAGCCGAGAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>973</pcr_amplicon_size>
		<canonical_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTYTAGATGCTCTTAAAAGCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35076</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>229655</contig_pos>
        <strand>+</strand>
        <context>raaaaaccty[C/T]agatgctctt</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTT</left_flank>
        <right_flank>AGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGCCCTTAGGAGCTTTCTGGATCAACACAGTTCATTTCACCCGTTTTTAAGCTATTCTCAAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTT</canonical>
            <polymorphic>AAATGCCCTTAGGAGCTTTCTGGATCAACACAGTTCATTTCACCCGTTTTTAAGCTATTCTCAAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTYAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTCCATAGTCAAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>CAATAATAGCCGAGAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>973</pcr_amplicon_size>
		<canonical_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAG</canonical_amplicon>
		<polymorphic_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTYAGATGCTCTTAAAAGCTTCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35077</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>229677</contig_pos>
        <strand>+</strand>
        <context>aaagcttcaa[G/T]sttyyagsgt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAA</left_flank>
        <right_flank>CTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATCAACACAGTTCATTTCACCCGTTTTTAAGCTATTCTCAAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTC</canonical>
            <polymorphic>GATCAACACAGTTCATTTCACCCGTTTTTAAGCTATTCTCAAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAKCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>109 108 105 71 61 40 39 34 33 32 32 32 32 31 31 22 22 22 19 14 11 11 11 11 11 11 10 10 10 8 7</canonical_bands>
                <polymorphic_bands>109 108 105 71 61 47 39 34 33 32 32 32 32 31 31 22 22 22 19 14 11 11 11 11 11 11 10 10 10 8</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>86 65 54 44 42 32 32 32 31 31 29 29 29 23 22 22 22 21 21 20 20 19 19 14 13 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 10 10 10 9 9 8 7</canonical_bands>
                <polymorphic_bands>86 65 54 44 42 36 32 32 32 31 31 29 29 23 22 22 22 21 21 20 20 19 19 14 13 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 10 10 10 9 9 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>359 322 180 71 61 7</canonical_bands>
                <polymorphic_bands>359 322 187 71 61</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTCCATAGTCAAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>CAATAATAGCCGAGAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>973</pcr_amplicon_size>
		<canonical_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCA</canonical_amplicon>
		<polymorphic_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAKCTTCCAGCGTCAAAAATAGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35078</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>229678</contig_pos>
        <strand>+</strand>
        <context>aagcttcaak[C/G]ttyyagsgtc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAG</left_flank>
        <right_flank>TTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAACACAGTTCATTTCACCCGTTTTTAAGCTATTCTCAAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCA</canonical>
            <polymorphic>ATCAACACAGTTCATTTCACCCGTTTTTAAGCTATTCTCAAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGSTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>109 108 105 71 61 40 39 34 33 32 32 32 31 31 31 22 22 22 20 14 11 11 11 11 11 11 10 10 10 8 7</canonical_bands>
                <polymorphic_bands>109 108 105 71 61 47 39 34 33 32 32 32 31 31 31 22 22 22 20 14 11 11 11 11 11 11 10 10 10 8</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>86 65 54 44 42 32 32 31 31 31 29 29 29 23 22 22 22 21 21 20 20 20 19 14 13 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 10 10 10 9 9 8 7</canonical_bands>
                <polymorphic_bands>86 65 54 44 42 36 32 32 31 31 31 29 29 23 22 22 22 21 21 20 20 20 19 14 13 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 10 10 10 9 9 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>359 323 180 71 60 7</canonical_bands>
                <polymorphic_bands>359 323 187 71 60</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTCCATAGTCAAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>CAATAATAGCCGAGAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>973</pcr_amplicon_size>
		<canonical_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCAT</canonical_amplicon>
		<polymorphic_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGSTTCCAGCGTCAAAAATAGTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35079</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>229681</contig_pos>
        <strand>+</strand>
        <context>cttcaakstt[C/T]yagsgtcraa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTT</left_flank>
        <right_flank>CAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACACAGTTCATTTCACCCGTTTTTAAGCTATTCTCAAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCC</canonical>
            <polymorphic>AACACAGTTCATTTCACCCGTTTTTAAGCTATTCTCAAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTYCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTCCATAGTCAAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>CAATAATAGCCGAGAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>973</pcr_amplicon_size>
		<canonical_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTT</canonical_amplicon>
		<polymorphic_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTYCAGCGTCAAAAATAGTCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35080</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>229682</contig_pos>
        <strand>+</strand>
        <context>ttcaakstty[C/T]agsgtcraaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTC</left_flank>
        <right_flank>AGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACAGTTCATTTCACCCGTTTTTAAGCTATTCTCAAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCA</canonical>
            <polymorphic>ACACAGTTCATTTCACCCGTTTTTAAGCTATTCTCAAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCYAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTCCATAGTCAAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>CAATAATAGCCGAGAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>973</pcr_amplicon_size>
		<canonical_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCYAGCGTCAAAAATAGTCATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35081</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>229685</contig_pos>
        <strand>+</strand>
        <context>aaksttyyag[C/G]gtcraaaatw</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAG</left_flank>
        <right_flank>GTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTTCATTTCACCCGTTTTTAAGCTATTCTCAAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTT</canonical>
            <polymorphic>CAGTTCATTTCACCCGTTTTTAAGCTATTCTCAAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGSGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTCCATAGTCAAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>CAATAATAGCCGAGAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>973</pcr_amplicon_size>
		<canonical_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGC</canonical_amplicon>
		<polymorphic_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGSGTCAAAAATAGTCATTTTCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35082</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>229689</contig_pos>
        <strand>+</strand>
        <context>ttyyagsgtc[A/G]aaaatwgtca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTC</left_flank>
        <right_flank>AAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATTTCACCCGTTTTTAAGCTATTCTCAAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCA</canonical>
            <polymorphic>TCATTTCACCCGTTTTTAAGCTATTCTCAAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCRAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTCCATAGTCAAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>CAATAATAGCCGAGAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>973</pcr_amplicon_size>
		<canonical_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATT</canonical_amplicon>
		<polymorphic_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCRAAAATAGTCATTTTCAGCCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35083</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>229695</contig_pos>
        <strand>+</strand>
        <context>sgtcraaaat[A/T]gtcattttca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAAT</left_flank>
        <right_flank>GTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACCCGTTTTTAAGCTATTCTCAAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTT</canonical>
            <polymorphic>CACCCGTTTTTAAGCTATTCTCAAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATWGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTCCATAGTCAAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>CAATAATAGCCGAGAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>973</pcr_amplicon_size>
		<canonical_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAG</canonical_amplicon>
		<polymorphic_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATWGTCATTTTCAGCCATTTTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35084</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>229711</contig_pos>
        <strand>+</strand>
        <context>tttcagccat[G/T]tttcrkctat</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCAT</left_flank>
        <right_flank>TTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTCAAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTGC</canonical>
            <polymorphic>ATTCTCAAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATKTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTCCATAGTCAAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>CAATAATAGCCGAGAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>973</pcr_amplicon_size>
		<canonical_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATKTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTG</canonical_amplicon>
		<polymorphic_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATKTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35085</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>229716</contig_pos>
        <strand>+</strand>
        <context>gccatktttc[A/G]kctatwtttc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTC</left_flank>
        <right_flank>GCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTGCAGTAT</canonical>
            <polymorphic>CAAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCRGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTGCAGTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>109 108 105 71 61 58 40 39 34 33 32 32 32 31 24 22 22 22 14 11 11 11 11 11 11 10 10 10 8 7</canonical_bands>
                <polymorphic_bands>109 108 105 71 61 58 54 40 39 34 33 32 32 31 24 22 22 14 11 11 11 11 11 11 10 10 10 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>86 65 54 44 42 32 32 31 29 29 29 24 23 22 22 22 22 21 21 21 20 20 19 15 14 13 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 10 10 10 9 9 8 7</canonical_bands>
                <polymorphic_bands>86 65 54 44 42 32 32 31 29 29 29 24 23 22 22 22 22 22 21 21 21 20 20 19 15 14 13 11 11 11 11 11 11 11 11 11 11 11 11 11 10 10 10 9 9 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTCCATAGTCAAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>CAATAATAGCCGAGAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>973</pcr_amplicon_size>
		<canonical_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCRGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTG</canonical_amplicon>
		<polymorphic_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCRGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35086</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>229717</contig_pos>
        <strand>+</strand>
        <context>ccatktttcr[G/T]ctatwtttca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCA</left_flank>
        <right_flank>CTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTGCAGTATT</canonical>
            <polymorphic>AAACGACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAKCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTGCAGTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>109 108 105 71 61 59 40 39 34 33 32 32 32 31 23 22 22 22 14 11 11 11 11 11 11 10 10 10 8 7</canonical_bands>
                <polymorphic_bands>109 108 105 71 61 59 51 39 34 33 32 32 32 31 23 22 22 22 14 11 11 11 11 11 10 10 10 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>86 65 54 44 42 32 32 31 29 29 29 23 23 22 22 22 22 21 21 21 20 20 19 16 14 13 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 10 10 10 9 9 8 7</canonical_bands>
                <polymorphic_bands>86 65 54 44 42 32 32 31 29 29 29 23 23 22 22 22 22 22 21 21 21 20 20 19 16 14 13 11 11 11 11 11 11 11 11 11 11 11 11 11 10 10 10 9 9 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTCCATAGTCAAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>CAATAATAGCCGAGAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>973</pcr_amplicon_size>
		<canonical_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTG</canonical_amplicon>
		<polymorphic_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAKCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35087</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>229722</contig_pos>
        <strand>+</strand>
        <context>tttcrkctat[A/T]tttcagctat</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTAT</left_flank>
        <right_flank>TTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTGCAGTATTTAAAA</canonical>
            <polymorphic>ACCATATTCGCTCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATWTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTGCAGTATTTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTCCATAGTCAAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>CAATAATAGCCGAGAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>973</pcr_amplicon_size>
		<canonical_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATWTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTG</canonical_amplicon>
		<polymorphic_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATWTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35088</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>229733</contig_pos>
        <strand>+</strand>
        <context>tttcagctat[G/T]tttcagytay</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTAT</left_flank>
        <right_flank>TTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTGCAGTATTTAAAAAAGCCTCCAGA</canonical>
            <polymorphic>TCAGAAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATKTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTGCAGTATTTAAAAAAGCCTCCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTCCATAGTCAAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>CAATAATAGCCGAGAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>973</pcr_amplicon_size>
		<canonical_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTG</canonical_amplicon>
		<polymorphic_amplicon>AAGCTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATKTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35089</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>229740</contig_pos>
        <strand>+</strand>
        <context>tatktttcag[C/T]tayttccagc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAG</left_flank>
        <right_flank>TACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTGCAGTATTTAAAAAAGCCTCCAGATGCTTGC</canonical>
            <polymorphic>CTTCCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGYTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTGCAGTATTTAAAAAAGCCTCCAGATGCTTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>109 108 105 82 71 61 40 39 34 33 32 32 32 31 22 22 22 14 11 11 11 11 11 11 10 10 10 8 7</canonical_bands>
                <polymorphic_bands>109 108 105 82 71 61 40 39 34 33 32 32 32 31 22 22 22 21 14 11 11 11 11 11 10 10 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>86 65 54 44 42 32 32 31 29 29 29 24 23 22 22 22 22 21 21 21 20 20 19 15 14 13 11 11 11 11 11 11 11 11 11 11 11 11 11 11 11 10 10 10 9 9 8 7</canonical_bands>
                <polymorphic_bands>86 65 54 44 42 32 32 31 29 29 29 24 23 22 22 22 22 21 21 21 21 20 20 19 15 14 13 11 11 11 11 11 11 11 11 11 11 11 11 11 11 10 10 9 9 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTCCATAGTCAAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>CAATAATAGCCGAGAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>973</pcr_amplicon_size>
		<canonical_amplicon>GCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTG</canonical_amplicon>
		<polymorphic_amplicon>GYTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35090</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>229743</contig_pos>
        <strand>+</strand>
        <context>ktttcagyta[C/T]ttccagctrt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTA</left_flank>
        <right_flank>TTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTGCAGTATTTAAAAAAGCCTCCAGATGCTTGCGGA</canonical>
            <polymorphic>CCATAGTCAAAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTAYTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTGCAGTATTTAAAAAAGCCTCCAGATGCTTGCGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTCCATAGTCAAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>CAATAATAGCCGAGAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>973</pcr_amplicon_size>
		<canonical_amplicon>ACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTG</canonical_amplicon>
		<polymorphic_amplicon>AYTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35091</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>229752</contig_pos>
        <strand>+</strand>
        <context>ayttccagct[A/G]tttttcagtc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCT</left_flank>
        <right_flank>TTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTGCAGTATTTAAAAAAGCCTCCAGATGCTTGCGGAAGGGGCTTC</canonical>
            <polymorphic>AAAACAGCCATTTTCAGTTATTTTCAGCTATTTTCAGTCATTTATTGCTATTTTCAAGCTATATTTCGTCAGCTTTTCAGCTATTTTTCAGCCATTTTTCAGCTTTTTTTCAGCTTTTTTCAGCTATTTTTCAGCCATTTTTCGTCCTATTTTTCAGCTATTTTCAGCTATTTTCCAGCTATTTTCAGGAAATTTTCAGCAATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTATTTTCAGATTTTTTTCAGCCATTTTTCAGCTATTTTTCGGCTATTTTTCAGCTGCTTTTTGGATATTTTCCGGGAATTTTCGGCCAAAAAAGCCTCCTGACGCCCTCAGAAGCTTCCAAGGTTAAAAATAGTCATTTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTRTTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTGCAGTATTTAAAAAAGCCTCCAGATGCTTGCGGAAGGGGCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTCCATAGTCAAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>CAATAATAGCCGAGAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>973</pcr_amplicon_size>
		<canonical_amplicon>TATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTG</canonical_amplicon>
		<polymorphic_amplicon>TRTTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35092</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>230122</contig_pos>
        <strand></strand>
        <context>ccacggtttt[A/T]aaaccataat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTT</left_flank>
        <right_flank>AAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTGCAGTATTTAAAAAAGCCTCCAGATGCTTGCGGAAGGGGCTTCCATGGTCAAAAATAGTCATTTTCAGTCATTTTTTCAGCCAAAAAAACCTCCAGATGCTCTTAAAAGCTTCAATGTTTTAGGGTCGAAAATTGTCATTTTTCAGCCATTTTTCGTCCTATATTTCAGCATGTTTCAGTTATTTTCAGCTGTTTTTTTTAAACCATGGTTTTTAAGCCATTTTTCAGCCATTTTCAGCTAATAAAAAAAACCTCCATTACCTGAACAATGGAATGTGTATCATTGAAGAATGCTGCCTTGTGCAGCGGATAGGCTTCATGGTCGAGACGGGCGGCCATCCGTTGGCCAATGATCCACGCGTCTTCGGTTCGAAATTTCGATGACATCATGATGGTGTTGAGGATCGAATGGG</canonical>
            <polymorphic>TTTCAGCCAATTTTTTCAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTWAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTGCAGTATTTAAAAAAGCCTCCAGATGCTTGCGGAAGGGGCTTCCATGGTCAAAAATAGTCATTTTCAGTCATTTTTTCAGCCAAAAAAACCTCCAGATGCTCTTAAAAGCTTCAATGTTTTAGGGTCGAAAATTGTCATTTTTCAGCCATTTTTCGTCCTATATTTCAGCATGTTTCAGTTATTTTCAGCTGTTTTTTTTAAACCATGGTTTTTAAGCCATTTTTCAGCCATTTTCAGCTAATAAAAAAAACCTCCATTACCTGAACAATGGAATGTGTATCATTGAAGAATGCTGCCTTGTGCAGCGGATAGGCTTCATGGTCGAGACGGGCGGCCATCCGTTGGCCAATGATCCACGCGTCTTCGGTTCGAAATTTCGATGACATCATGATGGTGTTGAGGATCGAATGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 213 191 97</canonical_bands>
                <polymorphic_bands>596 213 191</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>456 200 96 95 85 42 14 12</canonical_bands>
                <polymorphic_bands>468 200 96 95 85 42 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTCCATAGTCAAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>CAATAATAGCCGAGAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>973</pcr_amplicon_size>
		<canonical_amplicon>TAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTG</canonical_amplicon>
		<polymorphic_amplicon>TWAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35093</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>230138</contig_pos>
        <strand></strand>
        <context>ataattaagc[A/C]attttttcag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGC</left_flank>
        <right_flank>ATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTGCAGTATTTAAAAAAGCCTCCAGATGCTTGCGGAAGGGGCTTCCATGGTCAAAAATAGTCATTTTCAGTCATTTTTTCAGCCAAAAAAACCTCCAGATGCTCTTAAAAGCTTCAATGTTTTAGGGTCGAAAATTGTCATTTTTCAGCCATTTTTCGTCCTATATTTCAGCATGTTTCAGTTATTTTCAGCTGTTTTTTTTAAACCATGGTTTTTAAGCCATTTTTCAGCCATTTTCAGCTAATAAAAAAAACCTCCATTACCTGAACAATGGAATGTGTATCATTGAAGAATGCTGCCTTGTGCAGCGGATAGGCTTCATGGTCGAGACGGGCGGCCATCCGTTGGCCAATGATCCACGCGTCTTCGGTTCGAAATTTCGATGACATCATGATGGTGTTGAGGATCGAATGGGTCTAAAACCCGGAGGT</canonical>
            <polymorphic>CAGCCAGAAAAACCTTTAGATGCTCTTAAAAGCTTCAAGCTTCCAGCGTCAAAAATAGTCATTTTCAGCCATTTTTCAGCTATTTTTCAGCTATTTTTCAGCTACTTCCAGCTATTTTTCAGTCAGTTTTCAGCCAATTTAGTCATTTTTCTGCCATTTTCAGCGTTTTTTTCGGTTTTTTATTTACTGCTATAAAAAACGCTCAGATACTCTTAGAAGCTTCCAGAGCCCAATATAGTCGCTTTCCACTATTTTTCGGTCATTTTTCCGCCACTCTTTCGGCCACTTGCCAGTTATATTACGGTCATTTTTAGGTCGTCTCAGCTATTTTTCAGCCATTTTTCAGGTATTTGTCAGCTATTTTTCAGTCATTTTTCAGCTATTTTTCAGTCATTTTTAGCCACTTTTCAGCTATTTTGCAGTTATTTTCAATCATTTTTCGTCCTACATTTCAGCCATTTTTCAGTTATTTTCCACGGTTTTAAAACCATAATTAAGCMATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTGCAGTATTTAAAAAAGCCTCCAGATGCTTGCGGAAGGGGCTTCCATGGTCAAAAATAGTCATTTTCAGTCATTTTTTCAGCCAAAAAAACCTCCAGATGCTCTTAAAAGCTTCAATGTTTTAGGGTCGAAAATTGTCATTTTTCAGCCATTTTTCGTCCTATATTTCAGCATGTTTCAGTTATTTTCAGCTGTTTTTTTTAAACCATGGTTTTTAAGCCATTTTTCAGCCATTTTCAGCTAATAAAAAAAACCTCCATTACCTGAACAATGGAATGTGTATCATTGAAGAATGCTGCCTTGTGCAGCGGATAGGCTTCATGGTCGAGACGGGCGGCCATCCGTTGGCCAATGATCCACGCGTCTTCGGTTCGAAATTTCGATGACATCATGATGGTGTTGAGGATCGAATGGGTCTAAAACCCGGAGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>356 243 202 135 56 8</canonical_bands>
                <polymorphic_bands>356 243 210 135 56</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCTTCCATAGTCAAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>CAATAATAGCCGAGAAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>973</pcr_amplicon_size>
		<canonical_amplicon>CAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTG</canonical_amplicon>
		<polymorphic_amplicon>CMATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35094</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>230607</contig_pos>
        <strand>+</strand>
        <context>CATGATGGTG[C/T]TGAGGATCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATGATCCACGCGTCTTCGGTTCGAAATTTCGATGACATCATGATGGTG</left_flank>
        <right_flank>TGAGGATCGAATGGGTCTAAAACCCGGAGGTTGCTGAACCTGGAATAATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTGCAGTATTTAAAAAAGCCTCCAGATGCTTGCGGAAGGGGCTTCCATGGTCAAAAATAGTCATTTTCAGTCATTTTTTCAGCCAAAAAAACCTCCAGATGCTCTTAAAAGCTTCAATGTTTTAGGGTCGAAAATTGTCATTTTTCAGCCATTTTTCGTCCTATATTTCAGCATGTTTCAGTTATTTTCAGCTGTTTTTTTTAAACCATGGTTTTTAAGCCATTTTTCAGCCATTTTCAGCTAATAAAAAAAACCTCCATTACCTGAACAATGGAATGTGTATCATTGAAGAATGCTGCCTTGTGCAGCGGATAGGCTTCATGGTCGAGACGGGCGGCCATCCGTTGGCCAATGATCCACGCGTCTTCGGTTCGAAATTTCGATGACATCATGATGGTGTTGAGGATCGAATGGGTCTAAAACCCGGAGGTTGCTGAACCTGGAATAATTGGAATTTAGGATCTAGAACTTCGACGAAATAATGGGAAAACGAAAAAAATGAAGGAAAACCCTCTAATAATATGGCATAGGGAAAAATTGAGGGAAAAGACACAAAAACGCACAAAGGATACTGTAATTTTAGCCCAACTTATCTCTGCACCTATAAAAGATATCAAAAATCTGTCAACTGATGAAATGTTTATCATATTATCAGGCACATTTTGTCAATTGACCACTTTTTGATATCTTTTATAGAAAACGAGATAAATTGGCTCAAAGTTTATACTATGTGGACTTCTGTAAAAGCTACTCGGAAAACTGTGTTTATTAGATTCAAAATCGAAATTTTTAAATTATCTCAAGTTCTAACTTCCAGGAAAAGAAGTTTTAAAACAGCTAGAGCACTCAACTCTGGCTTTAAACACTTCCCTACGTCAGAAGAACCACATGGAAAAGTCA</canonical>
            <polymorphic>TTTTCCACGGTTTTAAAACCATAATTAAGCAATTTTTTCAGTCATTTTCAGCTTTTTTCTAGTCATTTTCAGCCATTTTTCATATTTTTCTCGGCTATTATTGCAGTATTTAAAAAAGCCTCCAGATGCTTGCGGAAGGGGCTTCCATGGTCAAAAATAGTCATTTTCAGTCATTTTTTCAGCCAAAAAAACCTCCAGATGCTCTTAAAAGCTTCAATGTTTTAGGGTCGAAAATTGTCATTTTTCAGCCATTTTTCGTCCTATATTTCAGCATGTTTCAGTTATTTTCAGCTGTTTTTTTTAAACCATGGTTTTTAAGCCATTTTTCAGCCATTTTCAGCTAATAAAAAAAACCTCCATTACCTGAACAATGGAATGTGTATCATTGAAGAATGCTGCCTTGTGCAGCGGATAGGCTTCATGGTCGAGACGGGCGGCCATCCGTTGGCCAATGATCCACGCGTCTTCGGTTCGAAATTTCGATGACATCATGATGGTGYTGAGGATCGAATGGGTCTAAAACCCGGAGGTTGCTGAACCTGGAATAATTGGAATTTAGGATCTAGAACTTCGACGAAATAATGGGAAAACGAAAAAAATGAAGGAAAACCCTCTAATAATATGGCATAGGGAAAAATTGAGGGAAAAGACACAAAAACGCACAAAGGATACTGTAATTTTAGCCCAACTTATCTCTGCACCTATAAAAGATATCAAAAATCTGTCAACTGATGAAATGTTTATCATATTATCAGGCACATTTTGTCAATTGACCACTTTTTGATATCTTTTATAGAAAACGAGATAAATTGGCTCAAAGTTTATACTATGTGGACTTCTGTAAAAGCTACTCGGAAAACTGTGTTTATTAGATTCAAAATCGAAATTTTTAAATTATCTCAAGTTCTAACTTCCAGGAAAAGAAGTTTTAAAACAGCTAGAGCACTCAACTCTGGCTTTAAACACTTCCCTACGTCAGAAGAACCACATGGAAAAGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGGAATGTGTATCATTGAAGA</pcr_primer_p1>
		<pcr_primer_p2>TATTAGAGGGTTTTCCTTCATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATGGAATGTGTATCATTGAAGAATGCTGCCTTGTGCAGCGGATAGGCTTCATGGTCGAGACGGGCGGCCATCCGTTGGCCAATGATCCACGCGTCTTCGGTTCGAAATTTCGATGACATCATGATGGTGTTGAGGATCGAATGGGTCTAAAACCCGGAGGTTGCTGAACCTGGAATAATTGGAATTTAGGATCTAGAACTTCGACGAAATAATGGGAAAACGAAAAAAATGAAGGAAAACCCTCTAATA</canonical_amplicon>
		<polymorphic_amplicon>AATGGAATGTGTATCATTGAAGAATGCTGCCTTGTGCAGCGGATAGGCTTCATGGTCGAGACGGGCGGCCATCCGTTGGCCAATGATCCACGCGTCTTCGGTTCGAAATTTCGATGACATCATGATGGTGYTGAGGATCGAATGGGTCTAAAACCCGGAGGTTGCTGAACCTGGAATAATTGGAATTTAGGATCTAGAACTTCGACGAAATAATGGGAAAACGAAAAAAATGAAGGAAAACCCTCTAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35095</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>230698</contig_pos>
        <strand>+</strand>
        <context>AATGGGAAAA[C/T]GAAAAAAATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGAATAATTGGAATTTAGGATCTAGAACTTCGACGAAATAATGGGAAAA</left_flank>
        <right_flank>GAAAAAAATGAAGGAAAACCCTCTAATAATATGGCATAGGGAAAAATTGA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGCTATTATTGCAGTATTTAAAAAAGCCTCCAGATGCTTGCGGAAGGGGCTTCCATGGTCAAAAATAGTCATTTTCAGTCATTTTTTCAGCCAAAAAAACCTCCAGATGCTCTTAAAAGCTTCAATGTTTTAGGGTCGAAAATTGTCATTTTTCAGCCATTTTTCGTCCTATATTTCAGCATGTTTCAGTTATTTTCAGCTGTTTTTTTTAAACCATGGTTTTTAAGCCATTTTTCAGCCATTTTCAGCTAATAAAAAAAACCTCCATTACCTGAACAATGGAATGTGTATCATTGAAGAATGCTGCCTTGTGCAGCGGATAGGCTTCATGGTCGAGACGGGCGGCCATCCGTTGGCCAATGATCCACGCGTCTTCGGTTCGAAATTTCGATGACATCATGATGGTGTTGAGGATCGAATGGGTCTAAAACCCGGAGGTTGCTGAACCTGGAATAATTGGAATTTAGGATCTAGAACTTCGACGAAATAATGGGAAAACGAAAAAAATGAAGGAAAACCCTCTAATAATATGGCATAGGGAAAAATTGAGGGAAAAGACACAAAAACGCACAAAGGATACTGTAATTTTAGCCCAACTTATCTCTGCACCTATAAAAGATATCAAAAATCTGTCAACTGATGAAATGTTTATCATATTATCAGGCACATTTTGTCAATTGACCACTTTTTGATATCTTTTATAGAAAACGAGATAAATTGGCTCAAAGTTTATACTATGTGGACTTCTGTAAAAGCTACTCGGAAAACTGTGTTTATTAGATTCAAAATCGAAATTTTTAAATTATCTCAAGTTCTAACTTCCAGGAAAAGAAGTTTTAAAACAGCTAGAGCACTCAACTCTGGCTTTAAACACTTCCCTACGTCAGAAGAACCACATGGAAAAGTCATAGAACACATGTTTATGAGCTGAAGAAAGAGTAAAGTGTGTTAAAAGCCACACTTTGAGCATTCCAATGCGATTTTTCTTGAACGTTTTCT</canonical>
            <polymorphic>CGGCTATTATTGCAGTATTTAAAAAAGCCTCCAGATGCTTGCGGAAGGGGCTTCCATGGTCAAAAATAGTCATTTTCAGTCATTTTTTCAGCCAAAAAAACCTCCAGATGCTCTTAAAAGCTTCAATGTTTTAGGGTCGAAAATTGTCATTTTTCAGCCATTTTTCGTCCTATATTTCAGCATGTTTCAGTTATTTTCAGCTGTTTTTTTTAAACCATGGTTTTTAAGCCATTTTTCAGCCATTTTCAGCTAATAAAAAAAACCTCCATTACCTGAACAATGGAATGTGTATCATTGAAGAATGCTGCCTTGTGCAGCGGATAGGCTTCATGGTCGAGACGGGCGGCCATCCGTTGGCCAATGATCCACGCGTCTTCGGTTCGAAATTTCGATGACATCATGATGGTGTTGAGGATCGAATGGGTCTAAAACCCGGAGGTTGCTGAACCTGGAATAATTGGAATTTAGGATCTAGAACTTCGACGAAATAATGGGAAAAYGAAAAAAATGAAGGAAAACCCTCTAATAATATGGCATAGGGAAAAATTGAGGGAAAAGACACAAAAACGCACAAAGGATACTGTAATTTTAGCCCAACTTATCTCTGCACCTATAAAAGATATCAAAAATCTGTCAACTGATGAAATGTTTATCATATTATCAGGCACATTTTGTCAATTGACCACTTTTTGATATCTTTTATAGAAAACGAGATAAATTGGCTCAAAGTTTATACTATGTGGACTTCTGTAAAAGCTACTCGGAAAACTGTGTTTATTAGATTCAAAATCGAAATTTTTAAATTATCTCAAGTTCTAACTTCCAGGAAAAGAAGTTTTAAAACAGCTAGAGCACTCAACTCTGGCTTTAAACACTTCCCTACGTCAGAAGAACCACATGGAAAAGTCATAGAACACATGTTTATGAGCTGAAGAAAGAGTAAAGTGTGTTAAAAGCCACACTTTGAGCATTCCAATGCGATTTTTCTTGAACGTTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGGAATGTGTATCATTGAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTCCCTCAATTTTTCCCTAT</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>AATGGAATGTGTATCATTGAAGAATGCTGCCTTGTGCAGCGGATAGGCTTCATGGTCGAGACGGGCGGCCATCCGTTGGCCAATGATCCACGCGTCTTCGGTTCGAAATTTCGATGACATCATGATGGTGTTGAGGATCGAATGGGTCTAAAACCCGGAGGTTGCTGAACCTGGAATAATTGGAATTTAGGATCTAGAACTTCGACGAAATAATGGGAAAACGAAAAAAATGAAGGAAAACCCTCTAATAATATGGCATAGGGAAAAATTGAGGGAA</canonical_amplicon>
		<polymorphic_amplicon>AATGGAATGTGTATCATTGAAGAATGCTGCCTTGTGCAGCGGATAGGCTTCATGGTCGAGACGGGCGGCCATCCGTTGGCCAATGATCCACGCGTCTTCGGTTCGAAATTTCGATGACATCATGATGGTGTTGAGGATCGAATGGGTCTAAAACCCGGAGGTTGCTGAACCTGGAATAATTGGAATTTAGGATCTAGAACTTCGACGAAATAATGGGAAAAYGAAAAAAATGAAGGAAAACCCTCTAATAATATGGCATAGGGAAAAATTGAGGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35096</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>230768</contig_pos>
        <strand>+</strand>
        <context>CACAAAAACG[C/T]ACAAAGGATa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTCTAATAATATGGCATAGGGAAAAATTGAGGGAAAAGACACAAAAACG</left_flank>
        <right_flank>ACAAAGGATACTGTAATTTTAGCCCAACTTATCTCTGCACCTATAAAAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTTCAGTCATTTTTTCAGCCAAAAAAACCTCCAGATGCTCTTAAAAGCTTCAATGTTTTAGGGTCGAAAATTGTCATTTTTCAGCCATTTTTCGTCCTATATTTCAGCATGTTTCAGTTATTTTCAGCTGTTTTTTTTAAACCATGGTTTTTAAGCCATTTTTCAGCCATTTTCAGCTAATAAAAAAAACCTCCATTACCTGAACAATGGAATGTGTATCATTGAAGAATGCTGCCTTGTGCAGCGGATAGGCTTCATGGTCGAGACGGGCGGCCATCCGTTGGCCAATGATCCACGCGTCTTCGGTTCGAAATTTCGATGACATCATGATGGTGTTGAGGATCGAATGGGTCTAAAACCCGGAGGTTGCTGAACCTGGAATAATTGGAATTTAGGATCTAGAACTTCGACGAAATAATGGGAAAACGAAAAAAATGAAGGAAAACCCTCTAATAATATGGCATAGGGAAAAATTGAGGGAAAAGACACAAAAACGCACAAAGGATACTGTAATTTTAGCCCAACTTATCTCTGCACCTATAAAAGATATCAAAAATCTGTCAACTGATGAAATGTTTATCATATTATCAGGCACATTTTGTCAATTGACCACTTTTTGATATCTTTTATAGAAAACGAGATAAATTGGCTCAAAGTTTATACTATGTGGACTTCTGTAAAAGCTACTCGGAAAACTGTGTTTATTAGATTCAAAATCGAAATTTTTAAATTATCTCAAGTTCTAACTTCCAGGAAAAGAAGTTTTAAAACAGCTAGAGCACTCAACTCTGGCTTTAAACACTTCCCTACGTCAGAAGAACCACATGGAAAAGTCATAGAACACATGTTTATGAGCTGAAGAAAGAGTAAAGTGTGTTAAAAGCCACACTTTGAGCATTCCAATGCGATTTTTCTTGAACGTTTTCTAAATTAATACCTTTTTCGAAGGAATGTAGCTACAAATGATCTACAGTAGGATTTAGTTTGTCTAGTGTGC</canonical>
            <polymorphic>CATTTTCAGTCATTTTTTCAGCCAAAAAAACCTCCAGATGCTCTTAAAAGCTTCAATGTTTTAGGGTCGAAAATTGTCATTTTTCAGCCATTTTTCGTCCTATATTTCAGCATGTTTCAGTTATTTTCAGCTGTTTTTTTTAAACCATGGTTTTTAAGCCATTTTTCAGCCATTTTCAGCTAATAAAAAAAACCTCCATTACCTGAACAATGGAATGTGTATCATTGAAGAATGCTGCCTTGTGCAGCGGATAGGCTTCATGGTCGAGACGGGCGGCCATCCGTTGGCCAATGATCCACGCGTCTTCGGTTCGAAATTTCGATGACATCATGATGGTGTTGAGGATCGAATGGGTCTAAAACCCGGAGGTTGCTGAACCTGGAATAATTGGAATTTAGGATCTAGAACTTCGACGAAATAATGGGAAAACGAAAAAAATGAAGGAAAACCCTCTAATAATATGGCATAGGGAAAAATTGAGGGAAAAGACACAAAAACGYACAAAGGATACTGTAATTTTAGCCCAACTTATCTCTGCACCTATAAAAGATATCAAAAATCTGTCAACTGATGAAATGTTTATCATATTATCAGGCACATTTTGTCAATTGACCACTTTTTGATATCTTTTATAGAAAACGAGATAAATTGGCTCAAAGTTTATACTATGTGGACTTCTGTAAAAGCTACTCGGAAAACTGTGTTTATTAGATTCAAAATCGAAATTTTTAAATTATCTCAAGTTCTAACTTCCAGGAAAAGAAGTTTTAAAACAGCTAGAGCACTCAACTCTGGCTTTAAACACTTCCCTACGTCAGAAGAACCACATGGAAAAGTCATAGAACACATGTTTATGAGCTGAAGAAAGAGTAAAGTGTGTTAAAAGCCACACTTTGAGCATTCCAATGCGATTTTTCTTGAACGTTTTCTAAATTAATACCTTTTTCGAAGGAATGTAGCTACAAATGATCTACAGTAGGATTTAGTTTGTCTAGTGTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>219 153 106 81 58 57 54 40 38 31 31 25 22 20 20 18 10 10 2 2 2 1</canonical_bands>
                <polymorphic_bands>219 153 106 81 58 57 54 48 40 31 31 25 22 20 20 18 10 2 2 2 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGAAGGAAAACCCTCTAATAA</pcr_primer_p1>
		<pcr_primer_p2>GCTTTTACAGAAGTCCACATAGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATGAAGGAAAACCCTCTAATAATATGGCATAGGGAAAAATTGAGGGAAAAGACACAAAAACGCACAAAGGATACTGTAATTTTAGCCCAACTTATCTCTGCACCTATAAAAGATATCAAAAATCTGTCAACTGATGAAATGTTTATCATATTATCAGGCACATTTTGTCAATTGACCACTTTTTGATATCTTTTATAGAAAACGAGATAAATTGGCTCAAAGTTTATACTATGTGGACTTCTGTAAAAGC</canonical_amplicon>
		<polymorphic_amplicon>AATGAAGGAAAACCCTCTAATAATATGGCATAGGGAAAAATTGAGGGAAAAGACACAAAAACGYACAAAGGATACTGTAATTTTAGCCCAACTTATCTCTGCACCTATAAAAGATATCAAAAATCTGTCAACTGATGAAATGTTTATCATATTATCAGGCACATTTTGTCAATTGACCACTTTTTGATATCTTTTATAGAAAACGAGATAAATTGGCTCAAAGTTTATACTATGTGGACTTCTGTAAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35097</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>230791</contig_pos>
        <strand></strand>
        <context>gtaattttag[C/G]ccaacttatc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAATTGAGGGAAAAGACACAAAAACGCACAAAGGATACTGTAATTTTAG</left_flank>
        <right_flank>CCAACTTATCTCTGCACCTATAAAAGATATCAAAAATCTGTCAACTGATG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAACCTCCAGATGCTCTTAAAAGCTTCAATGTTTTAGGGTCGAAAATTGTCATTTTTCAGCCATTTTTCGTCCTATATTTCAGCATGTTTCAGTTATTTTCAGCTGTTTTTTTTAAACCATGGTTTTTAAGCCATTTTTCAGCCATTTTCAGCTAATAAAAAAAACCTCCATTACCTGAACAATGGAATGTGTATCATTGAAGAATGCTGCCTTGTGCAGCGGATAGGCTTCATGGTCGAGACGGGCGGCCATCCGTTGGCCAATGATCCACGCGTCTTCGGTTCGAAATTTCGATGACATCATGATGGTGTTGAGGATCGAATGGGTCTAAAACCCGGAGGTTGCTGAACCTGGAATAATTGGAATTTAGGATCTAGAACTTCGACGAAATAATGGGAAAACGAAAAAAATGAAGGAAAACCCTCTAATAATATGGCATAGGGAAAAATTGAGGGAAAAGACACAAAAACGCACAAAGGATACTGTAATTTTAGCCCAACTTATCTCTGCACCTATAAAAGATATCAAAAATCTGTCAACTGATGAAATGTTTATCATATTATCAGGCACATTTTGTCAATTGACCACTTTTTGATATCTTTTATAGAAAACGAGATAAATTGGCTCAAAGTTTATACTATGTGGACTTCTGTAAAAGCTACTCGGAAAACTGTGTTTATTAGATTCAAAATCGAAATTTTTAAATTATCTCAAGTTCTAACTTCCAGGAAAAGAAGTTTTAAAACAGCTAGAGCACTCAACTCTGGCTTTAAACACTTCCCTACGTCAGAAGAACCACATGGAAAAGTCATAGAACACATGTTTATGAGCTGAAGAAAGAGTAAAGTGTGTTAAAAGCCACACTTTGAGCATTCCAATGCGATTTTTCTTGAACGTTTTCTAAATTAATACCTTTTTCGAAGGAATGTAGCTACAAATGATCTACAGTAGGATTTAGTTTGTCTAGTGTGCTGTTATCTACGTTATCTGATCAG</canonical>
            <polymorphic>AAAAAAACCTCCAGATGCTCTTAAAAGCTTCAATGTTTTAGGGTCGAAAATTGTCATTTTTCAGCCATTTTTCGTCCTATATTTCAGCATGTTTCAGTTATTTTCAGCTGTTTTTTTTAAACCATGGTTTTTAAGCCATTTTTCAGCCATTTTCAGCTAATAAAAAAAACCTCCATTACCTGAACAATGGAATGTGTATCATTGAAGAATGCTGCCTTGTGCAGCGGATAGGCTTCATGGTCGAGACGGGCGGCCATCCGTTGGCCAATGATCCACGCGTCTTCGGTTCGAAATTTCGATGACATCATGATGGTGTTGAGGATCGAATGGGTCTAAAACCCGGAGGTTGCTGAACCTGGAATAATTGGAATTTAGGATCTAGAACTTCGACGAAATAATGGGAAAACGAAAAAAATGAAGGAAAACCCTCTAATAATATGGCATAGGGAAAAATTGAGGGAAAAGACACAAAAACGCACAAAGGATACTGTAATTTTAGSCCAACTTATCTCTGCACCTATAAAAGATATCAAAAATCTGTCAACTGATGAAATGTTTATCATATTATCAGGCACATTTTGTCAATTGACCACTTTTTGATATCTTTTATAGAAAACGAGATAAATTGGCTCAAAGTTTATACTATGTGGACTTCTGTAAAAGCTACTCGGAAAACTGTGTTTATTAGATTCAAAATCGAAATTTTTAAATTATCTCAAGTTCTAACTTCCAGGAAAAGAAGTTTTAAAACAGCTAGAGCACTCAACTCTGGCTTTAAACACTTCCCTACGTCAGAAGAACCACATGGAAAAGTCATAGAACACATGTTTATGAGCTGAAGAAAGAGTAAAGTGTGTTAAAAGCCACACTTTGAGCATTCCAATGCGATTTTTCTTGAACGTTTTCTAAATTAATACCTTTTTCGAAGGAATGTAGCTACAAATGATCTACAGTAGGATTTAGTTTGTCTAGTGTGCTGTTATCTACGTTATCTGATCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>235 130 90 76 73 64 63 43 37 34 28 28 27 21 19 11 11 10</canonical_bands>
                <polymorphic_bands>365 90 76 73 64 63 43 37 34 28 28 27 21 19 11 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAATATGGCATAGGGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>ACAGTTTTCCGAGTAGCTTTTAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATAATATGGCATAGGGAAAAATTGAGGGAAAAGACACAAAAACGCACAAAGGATACTGTAATTTTAGCCCAACTTATCTCTGCACCTATAAAAGATATCAAAAATCTGTCAACTGATGAAATGTTTATCATATTATCAGGCACATTTTGTCAATTGACCACTTTTTGATATCTTTTATAGAAAACGAGATAAATTGGCTCAAAGTTTATACTATGTGGACTTCTGTAAAAGCTACTCGGAAAACTGT</canonical_amplicon>
		<polymorphic_amplicon>AATAATATGGCATAGGGAAAAATTGAGGGAAAAGACACAAAAACGCACAAAGGATACTGTAATTTTAGSCCAACTTATCTCTGCACCTATAAAAGATATCAAAAATCTGTCAACTGATGAAATGTTTATCATATTATCAGGCACATTTTGTCAATTGACCACTTTTTGATATCTTTTATAGAAAACGAGATAAATTGGCTCAAAGTTTATACTATGTGGACTTCTGTAAAAGCTACTCGGAAAACTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35098</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>253799</contig_pos>
        <strand>+</strand>
        <context>GTTGTGATGG[A/C]CTAGSTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TACAATTTCGTCGTTTTTCAACCGCATTCTTTACCAGCCTGTTGTGATGG</left_flank>
        <right_flank>CTAGCTTTTTCTATGCCACATTGACTGGGTTTGTGGCCTAGAAGCTCGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTGGACGGGGGAAGTGATGCCAAAAAGCCGAAAACTGCTGCGAAATTCGAGGAGGGGCTTAACGAGGAGACTGTGAGAAGATATCTTCGTCGCAAACCACATACCACCAAGGTAGGTTGTGGCCTAGCTGTTTCTAGGCCGCGCTGGCTGGGAATGGAAGAATCCATGTTGGTGGCCTAGAAACTCCTAAAAACTGGGCCACCACGTAATAGGAACCGATTTTTCGTAGTTCAAATTGCGTTCTATGATGACCTAGCTTTTTCTAGGCCACATTGACTGGGTTAGCCCCTTAAAATTAGCAAAAACTAGGCCACGGGATAGTGACTGTTTATAATAAGTTAAATTGCGTCTGTATGGCCTAGAGTTTTCTAGGTCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTCGGCAATTACAATTTCGTCGTTTTTCAACCGCATTCTTTACCAGCCTGTTGTGATGGCCTAGCTTTTTCTATGCCACATTGACTGGGTTTGTGGCCTAGAAGCTCGTAAAACTAGGCCAACAATATAGGGTCTAAGCTTAAATTGCGTCTGTTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGAATACAAATCAAGGATAGGGTGGCCTAGAAACTCACTAGAAAAAACTAGGCCACCAATATCGGGACTAGCTTTTGTAATTTAATTTTAGTTTCCTAAGACCTCTGTATTGATGGCCTAGCTTTTTCCTAGGCCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTTTGGAATTAACATTACGTCGTTTTTTGACCACATTCTTTACCAGCCTGTTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGTATACAAATCAAGCATAGGTGGTCTAGAAGCCCGGAAAAACTAGGCTGCGTAATACGAATTTTTTTGTTTTTAAAATTTA</canonical>
            <polymorphic>AGTGGACGGGGGAAGTGATGCCAAAAAGCCGAAAACTGCTGCGAAATTCGAGGAGGGGCTTAACGAGGAGACTGTGAGAAGATATCTTCGTCGCAAACCACATACCACCAAGGTAGGTTGTGGCCTAGCTGTTTCTAGGCCGCGCTGGCTGGGAATGGAAGAATCCATGTTGGTGGCCTAGAAACTCCTAAAAACTGGGCCACCACGTAATAGGAACCGATTTTTCGTAGTTCAAATTGCGTTCTATGATGACCTAGCTTTTTCTAGGCCACATTGACTGGGTTAGCCCCTTAAAATTAGCAAAAACTAGGCCACGGGATAGTGACTGTTTATAATAAGTTAAATTGCGTCTGTATGGCCTAGAGTTTTCTAGGTCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTCGGCAATTACAATTTCGTCGTTTTTCAACCGCATTCTTTACCAGCCTGTTGTGATGGMCTAGCTTTTTCTATGCCACATTGACTGGGTTTGTGGCCTAGAAGCTCGTAAAACTAGGCCAACAATATAGGGTCTAAGCTTAAATTGCGTCTGTTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGAATACAAATCAAGGATAGGGTGGCCTAGAAACTCACTAGAAAAAACTAGGCCACCAATATCGGGACTAGCTTTTGTAATTTAATTTTAGTTTCCTAAGACCTCTGTATTGATGGCCTAGCTTTTTCCTAGGCCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTTTGGAATTAACATTACGTCGTTTTTTGACCACATTCTTTACCAGCCTGTTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGTATACAAATCAAGCATAGGTGGTCTAGAAGCCCGGAAAAACTAGGCTGCGTAATACGAATTTTTTTGTTTTTAAAATTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>123 98 95 82 69 64 60 47 43 38 37 37 37 27 23 22 22 22 21 17 16</canonical_bands>
                <polymorphic_bands>123 119 98 95 69 64 60 47 43 38 37 37 27 23 22 22 22 21 17 16</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>69 69 65 58 47 45 36 35 32 30 29 29 28 28 27 25 25 23 22 22 20 19 18 18 15 14 13 12 12 12 11 11 11 11 9 9 9 9 8 5 5 5</canonical_bands>
                <polymorphic_bands>69 69 65 58 47 45 36 35 32 30 29 29 28 28 27 25 25 23 22 22 20 19 18 18 18 15 14 12 12 12 11 11 11 11 9 9 9 9 8 5 5</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>123 98 95 92 82 64 60 53 47 43 38 37 37 27 22 22 22 21 17</canonical_bands>
                <polymorphic_bands>123 119 98 95 92 64 60 53 47 43 38 37 27 22 22 22 21 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTGTATGGCCTAGAGTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>ACAACAGACGCAATTTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCTGTATGGCCTAGAGTTTTCTAGGTCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTCGGCAATTACAATTTCGTCGTTTTTCAACCGCATTCTTTACCAGCCTGTTGTGATGGCCTAGCTTTTTCTATGCCACATTGACTGGGTTTGTGGCCTAGAAGCTCGTAAAACTAGGCCAACAATATAGGGTCTAAGCTTAAATTGCGTCTGTTGT</canonical_amplicon>
		<polymorphic_amplicon>GTCTGTATGGCCTAGAGTTTTCTAGGTCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTCGGCAATTACAATTTCGTCGTTTTTCAACCGCATTCTTTACCAGCCTGTTGTGATGGMCTAGCTTTTTCTATGCCACATTGACTGGGTTTGTGGCCTAGAAGCTCGTAAAACTAGGCCAACAATATAGGGTCTAAGCTTAAATTGCGTCTGTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35099</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>253804</contig_pos>
        <strand>+</strand>
        <context>GATGGMCTAG[C/G]TTTTTCTATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTCGTCGTTTTTCAACCGCATTCTTTACCAGCCTGTTGTGATGGCCTAG</left_flank>
        <right_flank>TTTTTCTATGCCACATTGACTGGGTTTGTGGCCTAGAAGCTCGTAAAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGGGGGAAGTGATGCCAAAAAGCCGAAAACTGCTGCGAAATTCGAGGAGGGGCTTAACGAGGAGACTGTGAGAAGATATCTTCGTCGCAAACCACATACCACCAAGGTAGGTTGTGGCCTAGCTGTTTCTAGGCCGCGCTGGCTGGGAATGGAAGAATCCATGTTGGTGGCCTAGAAACTCCTAAAAACTGGGCCACCACGTAATAGGAACCGATTTTTCGTAGTTCAAATTGCGTTCTATGATGACCTAGCTTTTTCTAGGCCACATTGACTGGGTTAGCCCCTTAAAATTAGCAAAAACTAGGCCACGGGATAGTGACTGTTTATAATAAGTTAAATTGCGTCTGTATGGCCTAGAGTTTTCTAGGTCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTCGGCAATTACAATTTCGTCGTTTTTCAACCGCATTCTTTACCAGCCTGTTGTGATGGCCTAGCTTTTTCTATGCCACATTGACTGGGTTTGTGGCCTAGAAGCTCGTAAAACTAGGCCAACAATATAGGGTCTAAGCTTAAATTGCGTCTGTTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGAATACAAATCAAGGATAGGGTGGCCTAGAAACTCACTAGAAAAAACTAGGCCACCAATATCGGGACTAGCTTTTGTAATTTAATTTTAGTTTCCTAAGACCTCTGTATTGATGGCCTAGCTTTTTCCTAGGCCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTTTGGAATTAACATTACGTCGTTTTTTGACCACATTCTTTACCAGCCTGTTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGTATACAAATCAAGCATAGGTGGTCTAGAAGCCCGGAAAAACTAGGCTGCGTAATACGAATTTTTTTGTTTTTAAAATTTAGATTA</canonical>
            <polymorphic>ACGGGGGAAGTGATGCCAAAAAGCCGAAAACTGCTGCGAAATTCGAGGAGGGGCTTAACGAGGAGACTGTGAGAAGATATCTTCGTCGCAAACCACATACCACCAAGGTAGGTTGTGGCCTAGCTGTTTCTAGGCCGCGCTGGCTGGGAATGGAAGAATCCATGTTGGTGGCCTAGAAACTCCTAAAAACTGGGCCACCACGTAATAGGAACCGATTTTTCGTAGTTCAAATTGCGTTCTATGATGACCTAGCTTTTTCTAGGCCACATTGACTGGGTTAGCCCCTTAAAATTAGCAAAAACTAGGCCACGGGATAGTGACTGTTTATAATAAGTTAAATTGCGTCTGTATGGCCTAGAGTTTTCTAGGTCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTCGGCAATTACAATTTCGTCGTTTTTCAACCGCATTCTTTACCAGCCTGTTGTGATGGCCTAGSTTTTTCTATGCCACATTGACTGGGTTTGTGGCCTAGAAGCTCGTAAAACTAGGCCAACAATATAGGGTCTAAGCTTAAATTGCGTCTGTTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGAATACAAATCAAGGATAGGGTGGCCTAGAAACTCACTAGAAAAAACTAGGCCACCAATATCGGGACTAGCTTTTGTAATTTAATTTTAGTTTCCTAAGACCTCTGTATTGATGGCCTAGCTTTTTCCTAGGCCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTTTGGAATTAACATTACGTCGTTTTTTGACCACATTCTTTACCAGCCTGTTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGTATACAAATCAAGCATAGGTGGTCTAGAAGCCCGGAAAAACTAGGCTGCGTAATACGAATTTTTTTGTTTTTAAAATTTAGATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>247 142 129 123 111 95 50 40 34 29</canonical_bands>
                <polymorphic_bands>287 142 129 123 111 95 50 34 29</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>69 69 65 58 47 45 40 36 32 30 29 29 28 27 25 25 23 23 22 22 20 19 18 18 15 14 13 12 12 12 11 11 11 11 9 9 9 9 8 5 5 5</canonical_bands>
                <polymorphic_bands>69 69 65 58 47 45 40 37 36 30 29 29 28 27 25 25 23 23 22 22 20 19 18 18 15 14 13 12 12 12 11 11 11 11 9 9 9 9 8 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTGTATGGCCTAGAGTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>ACAACAGACGCAATTTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCTGTATGGCCTAGAGTTTTCTAGGTCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTCGGCAATTACAATTTCGTCGTTTTTCAACCGCATTCTTTACCAGCCTGTTGTGATGGCCTAGCTTTTTCTATGCCACATTGACTGGGTTTGTGGCCTAGAAGCTCGTAAAACTAGGCCAACAATATAGGGTCTAAGCTTAAATTGCGTCTGTTGT</canonical_amplicon>
		<polymorphic_amplicon>GTCTGTATGGCCTAGAGTTTTCTAGGTCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTCGGCAATTACAATTTCGTCGTTTTTCAACCGCATTCTTTACCAGCCTGTTGTGATGGCCTAGSTTTTTCTATGCCACATTGACTGGGTTTGTGGCCTAGAAGCTCGTAAAACTAGGCCAACAATATAGGGTCTAAGCTTAAATTGCGTCTGTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35100</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>253960</contig_pos>
        <strand>+</strand>
        <context>Gggtggccta[A/C]aaactcacta</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCTAGGCCACGTTGGCTATTGAATACAAATCAAGGATAGGGTGGCCTA</left_flank>
        <right_flank>AAACTCACTAGAAAAAACTAGGCCACCAATATCGGGACTAGCTTTTGTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCCATGTTGGTGGCCTAGAAACTCCTAAAAACTGGGCCACCACGTAATAGGAACCGATTTTTCGTAGTTCAAATTGCGTTCTATGATGACCTAGCTTTTTCTAGGCCACATTGACTGGGTTAGCCCCTTAAAATTAGCAAAAACTAGGCCACGGGATAGTGACTGTTTATAATAAGTTAAATTGCGTCTGTATGGCCTAGAGTTTTCTAGGTCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTCGGCAATTACAATTTCGTCGTTTTTCAACCGCATTCTTTACCAGCCTGTTGTGATGGCCTAGCTTTTTCTATGCCACATTGACTGGGTTTGTGGCCTAGAAGCTCGTAAAACTAGGCCAACAATATAGGGTCTAAGCTTAAATTGCGTCTGTTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGAATACAAATCAAGGATAGGGTGGCCTAGAAACTCACTAGAAAAAACTAGGCCACCAATATCGGGACTAGCTTTTGTAATTTAATTTTAGTTTCCTAAGACCTCTGTATTGATGGCCTAGCTTTTTCCTAGGCCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTTTGGAATTAACATTACGTCGTTTTTTGACCACATTCTTTACCAGCCTGTTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGTATACAAATCAAGCATAGGTGGTCTAGAAGCCCGGAAAAACTAGGCTGCGTAATACGAATTTTTTTGTTTTTAAAATTTAGATTATGATGGCCTAGATTTTCCTAGGTCACTGGGGAATACGGATTCCAGGATAATGGCCTAGAAGCTCAGAAAACTAGGTCGCCAATATTGGGGTCTTTTTTTTGTAATTCCAATTTTGATGGCCTAGCTTTTTCTAGGCCAAGTTGGCTGGAAAGAGAG</canonical>
            <polymorphic>AATCCATGTTGGTGGCCTAGAAACTCCTAAAAACTGGGCCACCACGTAATAGGAACCGATTTTTCGTAGTTCAAATTGCGTTCTATGATGACCTAGCTTTTTCTAGGCCACATTGACTGGGTTAGCCCCTTAAAATTAGCAAAAACTAGGCCACGGGATAGTGACTGTTTATAATAAGTTAAATTGCGTCTGTATGGCCTAGAGTTTTCTAGGTCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTCGGCAATTACAATTTCGTCGTTTTTCAACCGCATTCTTTACCAGCCTGTTGTGATGGCCTAGCTTTTTCTATGCCACATTGACTGGGTTTGTGGCCTAGAAGCTCGTAAAACTAGGCCAACAATATAGGGTCTAAGCTTAAATTGCGTCTGTTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGAATACAAATCAAGGATAGGGTGGCCTAMAAACTCACTAGAAAAAACTAGGCCACCAATATCGGGACTAGCTTTTGTAATTTAATTTTAGTTTCCTAAGACCTCTGTATTGATGGCCTAGCTTTTTCCTAGGCCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTTTGGAATTAACATTACGTCGTTTTTTGACCACATTCTTTACCAGCCTGTTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGTATACAAATCAAGCATAGGTGGTCTAGAAGCCCGGAAAAACTAGGCTGCGTAATACGAATTTTTTTGTTTTTAAAATTTAGATTATGATGGCCTAGATTTTCCTAGGTCACTGGGGAATACGGATTCCAGGATAATGGCCTAGAAGCTCAGAAAACTAGGTCGCCAATATTGGGGTCTTTTTTTTGTAATTCCAATTTTGATGGCCTAGCTTTTTCTAGGCCAAGTTGGCTGGAAAGAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>88 88 76 53 52 50 50 50 44 43 43 37 37 27 27 25 20 17 17 16 16 16 16 11 11 10 10 10 10 10 10 10</canonical_bands>
                <polymorphic_bands>88 88 76 55 53 52 50 50 50 43 43 37 37 27 27 25 20 17 17 16 16 16 16 11 10 10 10 10 10 10 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTGATGACCTAGCTTTTTCTA</pcr_primer_p1>
		<pcr_primer_p2>TTCCAAAATTAATCCCTATTACA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGAATACAAATCAAGGATAGGGTGGCCTAGAAACTCACTAGAAAAAACTAGGCCACCAATATCGGGACTAGCTTTTGTAATTTAATTTTAGTTTCCTAAGACCTCTGTATTGATGGCCTAGCTTTTTCCTAGGCCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTTTGGAA</canonical_amplicon>
		<polymorphic_amplicon>TTGTGATGACCTAGCTTTTTCTAGGCCACGTTGGCTATTGAATACAAATCAAGGATAGGGTGGCCTAMAAACTCACTAGAAAAAACTAGGCCACCAATATCGGGACTAGCTTTTGTAATTTAATTTTAGTTTCCTAAGACCTCTGTATTGATGGCCTAGCTTTTTCCTAGGCCACGTTGGCTGGGATGGTGGCCTAGGAACTCAGTAAACTAGGCCACCAATTGTAATAGGGATTAATTTTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35101</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>258420</contig_pos>
        <strand></strand>
        <context>ACGCCATAAA[A/G]GGTGAGCCGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAATTGTCGCTTACCCATTCCATTTCCACTTTTGTAATTACGCCATAAA</left_flank>
        <right_flank>GGTGAGCCGTACCTCTCGGTACCTGTCTAGACTTCCCCCTTCTCTCCGCT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGCGCCGCACCCTCAATCCTCGTCCCACACGTTCAACTCCTCGAGAGGCATATTTAAACGAAATTTCGAGAAAATTATTTTTTTCATGTCCCCCCACCTTTAAGGAACTTATGAAACACATTTTCTGTAGTTCTGAGCCTGATAGAAGCATTTTCATGTGAGTTACGTATCGATTTTAATTAAAAAAAAGACACAAAACTTTTGTTGCCGAAAGTTGCCGAAATTGCCGAATTTTTGTTTCGGCAAATTGCCGAGTTGCCGAATTGCCGAAAAAATTTTGTTGCTGCACAGGCCTGATTTGCATTCATTTACAAAATTCGGAAACTCTTTTGCTGAAAATCAAACTCTCAAACTCCAAAATTTCCGAATTTTTCATAGTTTCAATTTCTCATAGTTATTAAATAAGTCCCGCCCCCTTACCCTTAAACTGTGATTTTTCAATTTTTATTCAATTGTCGCTTACCCATTCCATTTCCACTTTTGTAATTACGCCATAAAAGGTGAGCCGTACCTCTCGGTACCTGTCTAGACTTCCCCCTTCTCTCCGCTCTCTTATCCTTGTATAGTTTCTCTTATTTTTCTTCTTCTTCTTTCTCATTTCTTTTCCTCACTTTCTTATTGTAACACATGACTTACATCACACTTTTACCGAATATTATAATAACATTTTTCTCGCTTTTATCATTTCAATGAAAGTTTAATTTTTCATGATCTCCACATCAGGGATGTTTGGAATGACCTTGTTGGATTTTTTCGGAATGTCGAATATTCCGATTTCAAAATTTTCGGAATTTAAGAAGTTTTTTTTAAATACTCATGTTTTGAAGTAGAAATTACATTTTACCATCACAAAAACGACGAATAGGTGAAAAATTGGCAAAAAGAGTTCGAAAACGCGAAAAATGGGAAGCACACCTCTAATAGAAGCCCATGAGTTTCTATTTTTACTATTAACAATCACCAAATTCTGTCTGTGTGTCCGTTTGTTCCCGGTTCCAC</canonical>
            <polymorphic>CGGCGCCGCACCCTCAATCCTCGTCCCACACGTTCAACTCCTCGAGAGGCATATTTAAACGAAATTTCGAGAAAATTATTTTTTTCATGTCCCCCCACCTTTAAGGAACTTATGAAACACATTTTCTGTAGTTCTGAGCCTGATAGAAGCATTTTCATGTGAGTTACGTATCGATTTTAATTAAAAAAAAGACACAAAACTTTTGTTGCCGAAAGTTGCCGAAATTGCCGAATTTTTGTTTCGGCAAATTGCCGAGTTGCCGAATTGCCGAAAAAATTTTGTTGCTGCACAGGCCTGATTTGCATTCATTTACAAAATTCGGAAACTCTTTTGCTGAAAATCAAACTCTCAAACTCCAAAATTTCCGAATTTTTCATAGTTTCAATTTCTCATAGTTATTAAATAAGTCCCGCCCCCTTACCCTTAAACTGTGATTTTTCAATTTTTATTCAATTGTCGCTTACCCATTCCATTTCCACTTTTGTAATTACGCCATAAARGGTGAGCCGTACCTCTCGGTACCTGTCTAGACTTCCCCCTTCTCTCCGCTCTCTTATCCTTGTATAGTTTCTCTTATTTTTCTTCTTCTTCTTTCTCATTTCTTTTCCTCACTTTCTTATTGTAACACATGACTTACATCACACTTTTACCGAATATTATAATAACATTTTTCTCGCTTTTATCATTTCAATGAAAGTTTAATTTTTCATGATCTCCACATCAGGGATGTTTGGAATGACCTTGTTGGATTTTTTCGGAATGTCGAATATTCCGATTTCAAAATTTTCGGAATTTAAGAAGTTTTTTTTAAATACTCATGTTTTGAAGTAGAAATTACATTTTACCATCACAAAAACGACGAATAGGTGAAAAATTGGCAAAAAGAGTTCGAAAACGCGAAAAATGGGAAGCACACCTCTAATAGAAGCCCATGAGTTTCTATTTTTACTATTAACAATCACCAAATTCTGTCTGTGTGTCCGTTTGTTCCCGGTTCCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTTATTCAATTGTCGCTTA</pcr_primer_p1>
		<pcr_primer_p2>GAAATGATAAAAGCGAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTTTTATTCAATTGTCGCTTACCCATTCCATTTCCACTTTTGTAATTACGCCATAAAAGGTGAGCCGTACCTCTCGGTACCTGTCTAGACTTCCCCCTTCTCTCCGCTCTCTTATCCTTGTATAGTTTCTCTTATTTTTCTTCTTCTTCTTTCTCATTTCTTTTCCTCACTTTCTTATTGTAACACATGACTTACATCACACTTTTACCGAATATTATAATAACATTTTTCTCGCTTTTATCATTTC</canonical_amplicon>
		<polymorphic_amplicon>AATTTTTATTCAATTGTCGCTTACCCATTCCATTTCCACTTTTGTAATTACGCCATAAARGGTGAGCCGTACCTCTCGGTACCTGTCTAGACTTCCCCCTTCTCTCCGCTCTCTTATCCTTGTATAGTTTCTCTTATTTTTCTTCTTCTTCTTTCTCATTTCTTTTCCTCACTTTCTTATTGTAACACATGACTTACATCACACTTTTACCGAATATTATAATAACATTTTTCTCGCTTTTATCATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35102</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>258685</contig_pos>
        <strand></strand>
        <context>tcggaatgtc[G/A]aatattccga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCCACATCAGGGATGTTTGGAATGACCTTGTTGGATTTTTTCGGAATGTC</left_flank>
        <right_flank>AATATTCCGATTTCAAAATTTTCGGAATTTAAGAAGTTTTTTTTAAATAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCCGAAAAAATTTTGTTGCTGCACAGGCCTGATTTGCATTCATTTACAAAATTCGGAAACTCTTTTGCTGAAAATCAAACTCTCAAACTCCAAAATTTCCGAATTTTTCATAGTTTCAATTTCTCATAGTTATTAAATAAGTCCCGCCCCCTTACCCTTAAACTGTGATTTTTCAATTTTTATTCAATTGTCGCTTACCCATTCCATTTCCACTTTTGTAATTACGCCATAAAAGGTGAGCCGTACCTCTCGGTACCTGTCTAGACTTCCCCCTTCTCTCCGCTCTCTTATCCTTGTATAGTTTCTCTTATTTTTCTTCTTCTTCTTTCTCATTTCTTTTCCTCACTTTCTTATTGTAACACATGACTTACATCACACTTTTACCGAATATTATAATAACATTTTTCTCGCTTTTATCATTTCAATGAAAGTTTAATTTTTCATGATCTCCACATCAGGGATGTTTGGAATGACCTTGTTGGATTTTTTCGGAATGTCGAATATTCCGATTTCAAAATTTTCGGAATTTAAGAAGTTTTTTTTAAATACTCATGTTTTGAAGTAGAAATTACATTTTACCATCACAAAAACGACGAATAGGTGAAAAATTGGCAAAAAGAGTTCGAAAACGCGAAAAATGGGAAGCACACCTCTAATAGAAGCCCATGAGTTTCTATTTTTACTATTAACAATCACCAAATTCTGTCTGTGTGTCCGTTTGTTCCCGGTTCCACGACCCTAGCGAAGTCCCCAGTAGTCCAAAATTCTCAAATTTTCACAGATTATCAGAAATAGCAGCGAGATGTTGCCCGTCTATTTTTCATTTTGAAATTTTGTTTCTGACGTCATCTGGAGACGTTACTCCATTCCTTCAGTGCAACTCTTTAGAAAATTATTTTCACGTCACTTCCGTCCAACCTCTCTATTTCCTTTTCTTATCCACACTATATCTGATAAAAAAGTGATTTTGTGAAAATAATTATTTAGTCTTAATTTTGA</canonical>
            <polymorphic>TGCCGAAAAAATTTTGTTGCTGCACAGGCCTGATTTGCATTCATTTACAAAATTCGGAAACTCTTTTGCTGAAAATCAAACTCTCAAACTCCAAAATTTCCGAATTTTTCATAGTTTCAATTTCTCATAGTTATTAAATAAGTCCCGCCCCCTTACCCTTAAACTGTGATTTTTCAATTTTTATTCAATTGTCGCTTACCCATTCCATTTCCACTTTTGTAATTACGCCATAAAAGGTGAGCCGTACCTCTCGGTACCTGTCTAGACTTCCCCCTTCTCTCCGCTCTCTTATCCTTGTATAGTTTCTCTTATTTTTCTTCTTCTTCTTTCTCATTTCTTTTCCTCACTTTCTTATTGTAACACATGACTTACATCACACTTTTACCGAATATTATAATAACATTTTTCTCGCTTTTATCATTTCAATGAAAGTTTAATTTTTCATGATCTCCACATCAGGGATGTTTGGAATGACCTTGTTGGATTTTTTCGGAATGTCRAATATTCCGATTTCAAAATTTTCGGAATTTAAGAAGTTTTTTTTAAATACTCATGTTTTGAAGTAGAAATTACATTTTACCATCACAAAAACGACGAATAGGTGAAAAATTGGCAAAAAGAGTTCGAAAACGCGAAAAATGGGAAGCACACCTCTAATAGAAGCCCATGAGTTTCTATTTTTACTATTAACAATCACCAAATTCTGTCTGTGTGTCCGTTTGTTCCCGGTTCCACGACCCTAGCGAAGTCCCCAGTAGTCCAAAATTCTCAAATTTTCACAGATTATCAGAAATAGCAGCGAGATGTTGCCCGTCTATTTTTCATTTTGAAATTTTGTTTCTGACGTCATCTGGAGACGTTACTCCATTCCTTCAGTGCAACTCTTTAGAAAATTATTTTCACGTCACTTCCGTCCAACCTCTCTATTTCCTTTTCTTATCCACACTATATCTGATAAAAAAGTGATTTTGTGAAAATAATTATTTAGTCTTAATTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 375 126</canonical_bands>
                <polymorphic_bands>625 375</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTCGCTTTTATCATTTCAA</pcr_primer_p1>
		<pcr_primer_p2>TCAGAATTTTAAAGGTTACTGAACT</pcr_primer_p2>
		<pcr_amplicon_size>638</pcr_amplicon_size>
		<canonical_amplicon>TTCTCGCTTTTATCATTTCAATGAAAGTTTAATTTTTCATGATCTCCACATCAGGGATGTTTGGAATGACCTTGTTGGATTTTTTCGGAATGTCGAATATTCCGATTTCAAAATTTTCG</canonical_amplicon>
		<polymorphic_amplicon>TTCTCGCTTTTATCATTTCAATGAAAGTTTAATTTTTCATGATCTCCACATCAGGGATGTTTGGAATGACCTTGTTGGATTTTTTCGGAATGTCRAATATTCCGATTTCAAAATTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35103</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>266009</contig_pos>
        <strand></strand>
        <context>atgtttaaaa[C/T]cwrgaataaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAAAAAAGTCAGAGAAAAATTCTTGCAAATTAACGAATATGTTTAAAA</left_flank>
        <right_flank>CTGGAATAAAACATTTTCCCGGAATCCGGAATACGGAATACAAAATCCGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAGTTCATTTAAAAGGGTCCAAGTGAGAATTTGCATTTTATAAATTTCATCTTTCTCAGTGTCTTCAATTTCCCATTTGTTAAATGTTAACAAGCACAAATAATGAAGAATTGTGGATTTGCACTCACCAAAATCTTTCTGGGATCTGGAAAATTATACTAGTGCCGTTTTGATAATTTTTGTTTTGAAAGTCTAAGAAAACCAGAGATGTCCGGAATGACTTTTGAAAGACGGAATCAGAAATCCGAAATCCGGAATAAAGATATTTTCACGGAATCCGGAATCCGGACAAATTAAAATTTCCCGGAATTCGGAATACGGAATGAAACTAATTTTCCGGAATACGGAATGCGGAATACGGAATCCTGAATTTTGAGTACTCCAAATGGGTAGAAAAGTTCTAAAAATGCATATCGTGCTATATTTTTGCATTTTTAGCCGCAGAAGTTCAAAAAAGTCAGAGAAAAATTCTTGCAAATTAACGAATATGTTTAAAACCTGGAATAAAACATTTTCCCGGAATCCGGAATACGGAATACAAAATCCGGAATCCGGACGCCTCTGAAGAAAGCACGGAATGTTATGCTAAAAATCTCGATTTTTGAAAGTTCCGGAAGTTTCAAAAAAATACGAAAATTTCCACGAATTCTGAATTTTTACCTAAATTTGATTATTTTCTTTTTAAACCGTTCTAAACGTGCCTTCGAAACTTGAATATATACCATAAAACCTGAAATAGAAGGTCCCTCTAACTTTTAACTTCGACACAATTTATCTCAATTCCTGTTAAAGATATAAAAAAGATGTCAACTGACAAGTTGTTTATCATAATATGATCAACACTTTATCAGTTGACAGACTTTTGATATCTCTGATAGAAATCGAGATAATGGAGCTCAAAATTAACAGTTCTGGAGCCCTTCTATCACAGTTTTTACAGTAAAACCTGTAATAGAAGGGTCCCCTAATTTTTGACTTTCAGCTAATTAAATATTGGC</canonical>
            <polymorphic>TCCAGTTCATTTAAAAGGGTCCAAGTGAGAATTTGCATTTTATAAATTTCATCTTTCTCAGTGTCTTCAATTTCCCATTTGTTAAATGTTAACAAGCACAAATAATGAAGAATTGTGGATTTGCACTCACCAAAATCTTTCTGGGATCTGGAAAATTATACTAGTGCCGTTTTGATAATTTTTGTTTTGAAAGTCTAAGAAAACCAGAGATGTCCGGAATGACTTTTGAAAGACGGAATCAGAAATCCGAAATCCGGAATAAAGATATTTTCACGGAATCCGGAATCCGGACAAATTAAAATTTCCCGGAATTCGGAATACGGAATGAAACTAATTTTCCGGAATACGGAATGCGGAATACGGAATCCTGAATTTTGAGTACTCCAAATGGGTAGAAAAGTTCTAAAAATGCATATCGTGCTATATTTTTGCATTTTTAGCCGCAGAAGTTCAAAAAAGTCAGAGAAAAATTCTTGCAAATTAACGAATATGTTTAAAAYCTGGAATAAAACATTTTCCCGGAATCCGGAATACGGAATACAAAATCCGGAATCCGGACGCCTCTGAAGAAAGCACGGAATGTTATGCTAAAAATCTCGATTTTTGAAAGTTCCGGAAGTTTCAAAAAAATACGAAAATTTCCACGAATTCTGAATTTTTACCTAAATTTGATTATTTTCTTTTTAAACCGTTCTAAACGTGCCTTCGAAACTTGAATATATACCATAAAACCTGAAATAGAAGGTCCCTCTAACTTTTAACTTCGACACAATTTATCTCAATTCCTGTTAAAGATATAAAAAAGATGTCAACTGACAAGTTGTTTATCATAATATGATCAACACTTTATCAGTTGACAGACTTTTGATATCTCTGATAGAAATCGAGATAATGGAGCTCAAAATTAACAGTTCTGGAGCCCTTCTATCACAGTTTTTACAGTAAAACCTGTAATAGAAGGGTCCCCTAATTTTTGACTTTCAGCTAATTAAATATTGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>481 306 195 18</canonical_bands>
                <polymorphic_bands>481 306 213</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATAATTTTTGTTTTGAAAGTCT</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTTAGATTTTTGGAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>860</pcr_amplicon_size>
		<canonical_amplicon>TGATAATTTTTGTTTTGAAAGTCTAAGAAAACCAGAGATGTCCGGAATGACTTTTGAAAGACGGAATCAGAAATCCGAAATCCGGAATAAAGATATTTTCACGGAATCCGGAATCCGGACAAATTAAAATTTCCCGGAATTCGGAATACGGAATGAAACTAATTTTCCGGAATACGGAATGCGGAATACGGAATCCTGAATTTTGAGTACTCCAAATGGGTAGAAAAGTTCTAAAAATGCATATCGTGCTATATTTTTGCATTTTTAGCCGCAGAAGTTCAAAAAAGTCAGAGAAAAATTCTTGCAAATTAACGAATATGTTTAAAACCTGGAATAAAACATTTTCCCGG</canonical_amplicon>
		<polymorphic_amplicon>TGATAATTTTTGTTTTGAAAGTCTAAGAAAACCAGAGATGTCCGGAATGACTTTTGAAAGACGGAATCAGAAATCCGAAATCCGGAATAAAGATATTTTCACGGAATCCGGAATCCGGACAAATTAAAATTTCCCGGAATTCGGAATACGGAATGAAACTAATTTTCCGGAATACGGAATGCGGAATACGGAATCCTGAATTTTGAGTACTCCAAATGGGTAGAAAAGTTCTAAAAATGCATATCGTGCTATATTTTTGCATTTTTAGCCGCAGAAGTTCAAAAAAGTCAGAGAAAAATTCTTGCAAATTAACGAATATGTTTAAAAYCTGGAATAAAACATTTTCCCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35104</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>266011</contig_pos>
        <strand></strand>
        <context>gtttaaaayc[T/A]rgaataaaac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CAAAAAAGTCAGAGAAAAATTCTTGCAAATTAACGAATATGTTTAAAACC</left_flank>
        <right_flank>GGAATAAAACATTTTCCCGGAATCCGGAATACGGAATACAAAATCCGGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTTCATTTAAAAGGGTCCAAGTGAGAATTTGCATTTTATAAATTTCATCTTTCTCAGTGTCTTCAATTTCCCATTTGTTAAATGTTAACAAGCACAAATAATGAAGAATTGTGGATTTGCACTCACCAAAATCTTTCTGGGATCTGGAAAATTATACTAGTGCCGTTTTGATAATTTTTGTTTTGAAAGTCTAAGAAAACCAGAGATGTCCGGAATGACTTTTGAAAGACGGAATCAGAAATCCGAAATCCGGAATAAAGATATTTTCACGGAATCCGGAATCCGGACAAATTAAAATTTCCCGGAATTCGGAATACGGAATGAAACTAATTTTCCGGAATACGGAATGCGGAATACGGAATCCTGAATTTTGAGTACTCCAAATGGGTAGAAAAGTTCTAAAAATGCATATCGTGCTATATTTTTGCATTTTTAGCCGCAGAAGTTCAAAAAAGTCAGAGAAAAATTCTTGCAAATTAACGAATATGTTTAAAACCTGGAATAAAACATTTTCCCGGAATCCGGAATACGGAATACAAAATCCGGAATCCGGACGCCTCTGAAGAAAGCACGGAATGTTATGCTAAAAATCTCGATTTTTGAAAGTTCCGGAAGTTTCAAAAAAATACGAAAATTTCCACGAATTCTGAATTTTTACCTAAATTTGATTATTTTCTTTTTAAACCGTTCTAAACGTGCCTTCGAAACTTGAATATATACCATAAAACCTGAAATAGAAGGTCCCTCTAACTTTTAACTTCGACACAATTTATCTCAATTCCTGTTAAAGATATAAAAAAGATGTCAACTGACAAGTTGTTTATCATAATATGATCAACACTTTATCAGTTGACAGACTTTTGATATCTCTGATAGAAATCGAGATAATGGAGCTCAAAATTAACAGTTCTGGAGCCCTTCTATCACAGTTTTTACAGTAAAACCTGTAATAGAAGGGTCCCCTAATTTTTGACTTTCAGCTAATTAAATATTGGCAA</canonical>
            <polymorphic>CAGTTCATTTAAAAGGGTCCAAGTGAGAATTTGCATTTTATAAATTTCATCTTTCTCAGTGTCTTCAATTTCCCATTTGTTAAATGTTAACAAGCACAAATAATGAAGAATTGTGGATTTGCACTCACCAAAATCTTTCTGGGATCTGGAAAATTATACTAGTGCCGTTTTGATAATTTTTGTTTTGAAAGTCTAAGAAAACCAGAGATGTCCGGAATGACTTTTGAAAGACGGAATCAGAAATCCGAAATCCGGAATAAAGATATTTTCACGGAATCCGGAATCCGGACAAATTAAAATTTCCCGGAATTCGGAATACGGAATGAAACTAATTTTCCGGAATACGGAATGCGGAATACGGAATCCTGAATTTTGAGTACTCCAAATGGGTAGAAAAGTTCTAAAAATGCATATCGTGCTATATTTTTGCATTTTTAGCCGCAGAAGTTCAAAAAAGTCAGAGAAAAATTCTTGCAAATTAACGAATATGTTTAAAACCWGGAATAAAACATTTTCCCGGAATCCGGAATACGGAATACAAAATCCGGAATCCGGACGCCTCTGAAGAAAGCACGGAATGTTATGCTAAAAATCTCGATTTTTGAAAGTTCCGGAAGTTTCAAAAAAATACGAAAATTTCCACGAATTCTGAATTTTTACCTAAATTTGATTATTTTCTTTTTAAACCGTTCTAAACGTGCCTTCGAAACTTGAATATATACCATAAAACCTGAAATAGAAGGTCCCTCTAACTTTTAACTTCGACACAATTTATCTCAATTCCTGTTAAAGATATAAAAAAGATGTCAACTGACAAGTTGTTTATCATAATATGATCAACACTTTATCAGTTGACAGACTTTTGATATCTCTGATAGAAATCGAGATAATGGAGCTCAAAATTAACAGTTCTGGAGCCCTTCTATCACAGTTTTTACAGTAAAACCTGTAATAGAAGGGTCCCCTAATTTTTGACTTTCAGCTAATTAAATATTGGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATAATTTTTGTTTTGAAAGTCT</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTTAGATTTTTGGAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>860</pcr_amplicon_size>
		<canonical_amplicon>TGATAATTTTTGTTTTGAAAGTCTAAGAAAACCAGAGATGTCCGGAATGACTTTTGAAAGACGGAATCAGAAATCCGAAATCCGGAATAAAGATATTTTCACGGAATCCGGAATCCGGACAAATTAAAATTTCCCGGAATTCGGAATACGGAATGAAACTAATTTTCCGGAATACGGAATGCGGAATACGGAATCCTGAATTTTGAGTACTCCAAATGGGTAGAAAAGTTCTAAAAATGCATATCGTGCTATATTTTTGCATTTTTAGCCGCAGAAGTTCAAAAAAGTCAGAGAAAAATTCTTGCAAATTAACGAATATGTTTAAAACCTGGAATAAAACATTTTCCCGGAA</canonical_amplicon>
		<polymorphic_amplicon>TGATAATTTTTGTTTTGAAAGTCTAAGAAAACCAGAGATGTCCGGAATGACTTTTGAAAGACGGAATCAGAAATCCGAAATCCGGAATAAAGATATTTTCACGGAATCCGGAATCCGGACAAATTAAAATTTCCCGGAATTCGGAATACGGAATGAAACTAATTTTCCGGAATACGGAATGCGGAATACGGAATCCTGAATTTTGAGTACTCCAAATGGGTAGAAAAGTTCTAAAAATGCATATCGTGCTATATTTTTGCATTTTTAGCCGCAGAAGTTCAAAAAAGTCAGAGAAAAATTCTTGCAAATTAACGAATATGTTTAAAACCWGGAATAAAACATTTTCCCGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35105</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>266012</contig_pos>
        <strand></strand>
        <context>tttaaaaycw[G/A]gaataaaaca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAAAAGTCAGAGAAAAATTCTTGCAAATTAACGAATATGTTTAAAACCT</left_flank>
        <right_flank>GAATAAAACATTTTCCCGGAATCCGGAATACGGAATACAAAATCCGGAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTCATTTAAAAGGGTCCAAGTGAGAATTTGCATTTTATAAATTTCATCTTTCTCAGTGTCTTCAATTTCCCATTTGTTAAATGTTAACAAGCACAAATAATGAAGAATTGTGGATTTGCACTCACCAAAATCTTTCTGGGATCTGGAAAATTATACTAGTGCCGTTTTGATAATTTTTGTTTTGAAAGTCTAAGAAAACCAGAGATGTCCGGAATGACTTTTGAAAGACGGAATCAGAAATCCGAAATCCGGAATAAAGATATTTTCACGGAATCCGGAATCCGGACAAATTAAAATTTCCCGGAATTCGGAATACGGAATGAAACTAATTTTCCGGAATACGGAATGCGGAATACGGAATCCTGAATTTTGAGTACTCCAAATGGGTAGAAAAGTTCTAAAAATGCATATCGTGCTATATTTTTGCATTTTTAGCCGCAGAAGTTCAAAAAAGTCAGAGAAAAATTCTTGCAAATTAACGAATATGTTTAAAACCTGGAATAAAACATTTTCCCGGAATCCGGAATACGGAATACAAAATCCGGAATCCGGACGCCTCTGAAGAAAGCACGGAATGTTATGCTAAAAATCTCGATTTTTGAAAGTTCCGGAAGTTTCAAAAAAATACGAAAATTTCCACGAATTCTGAATTTTTACCTAAATTTGATTATTTTCTTTTTAAACCGTTCTAAACGTGCCTTCGAAACTTGAATATATACCATAAAACCTGAAATAGAAGGTCCCTCTAACTTTTAACTTCGACACAATTTATCTCAATTCCTGTTAAAGATATAAAAAAGATGTCAACTGACAAGTTGTTTATCATAATATGATCAACACTTTATCAGTTGACAGACTTTTGATATCTCTGATAGAAATCGAGATAATGGAGCTCAAAATTAACAGTTCTGGAGCCCTTCTATCACAGTTTTTACAGTAAAACCTGTAATAGAAGGGTCCCCTAATTTTTGACTTTCAGCTAATTAAATATTGGCAAT</canonical>
            <polymorphic>AGTTCATTTAAAAGGGTCCAAGTGAGAATTTGCATTTTATAAATTTCATCTTTCTCAGTGTCTTCAATTTCCCATTTGTTAAATGTTAACAAGCACAAATAATGAAGAATTGTGGATTTGCACTCACCAAAATCTTTCTGGGATCTGGAAAATTATACTAGTGCCGTTTTGATAATTTTTGTTTTGAAAGTCTAAGAAAACCAGAGATGTCCGGAATGACTTTTGAAAGACGGAATCAGAAATCCGAAATCCGGAATAAAGATATTTTCACGGAATCCGGAATCCGGACAAATTAAAATTTCCCGGAATTCGGAATACGGAATGAAACTAATTTTCCGGAATACGGAATGCGGAATACGGAATCCTGAATTTTGAGTACTCCAAATGGGTAGAAAAGTTCTAAAAATGCATATCGTGCTATATTTTTGCATTTTTAGCCGCAGAAGTTCAAAAAAGTCAGAGAAAAATTCTTGCAAATTAACGAATATGTTTAAAACCTRGAATAAAACATTTTCCCGGAATCCGGAATACGGAATACAAAATCCGGAATCCGGACGCCTCTGAAGAAAGCACGGAATGTTATGCTAAAAATCTCGATTTTTGAAAGTTCCGGAAGTTTCAAAAAAATACGAAAATTTCCACGAATTCTGAATTTTTACCTAAATTTGATTATTTTCTTTTTAAACCGTTCTAAACGTGCCTTCGAAACTTGAATATATACCATAAAACCTGAAATAGAAGGTCCCTCTAACTTTTAACTTCGACACAATTTATCTCAATTCCTGTTAAAGATATAAAAAAGATGTCAACTGACAAGTTGTTTATCATAATATGATCAACACTTTATCAGTTGACAGACTTTTGATATCTCTGATAGAAATCGAGATAATGGAGCTCAAAATTAACAGTTCTGGAGCCCTTCTATCACAGTTTTTACAGTAAAACCTGTAATAGAAGGGTCCCCTAATTTTTGACTTTCAGCTAATTAAATATTGGCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>484 303 195 18</canonical_bands>
                <polymorphic_bands>484 303 213</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATAATTTTTGTTTTGAAAGTCT</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTTAGATTTTTGGAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>860</pcr_amplicon_size>
		<canonical_amplicon>TGATAATTTTTGTTTTGAAAGTCTAAGAAAACCAGAGATGTCCGGAATGACTTTTGAAAGACGGAATCAGAAATCCGAAATCCGGAATAAAGATATTTTCACGGAATCCGGAATCCGGACAAATTAAAATTTCCCGGAATTCGGAATACGGAATGAAACTAATTTTCCGGAATACGGAATGCGGAATACGGAATCCTGAATTTTGAGTACTCCAAATGGGTAGAAAAGTTCTAAAAATGCATATCGTGCTATATTTTTGCATTTTTAGCCGCAGAAGTTCAAAAAAGTCAGAGAAAAATTCTTGCAAATTAACGAATATGTTTAAAACCTGGAATAAAACATTTTCCCGGAAT</canonical_amplicon>
		<polymorphic_amplicon>TGATAATTTTTGTTTTGAAAGTCTAAGAAAACCAGAGATGTCCGGAATGACTTTTGAAAGACGGAATCAGAAATCCGAAATCCGGAATAAAGATATTTTCACGGAATCCGGAATCCGGACAAATTAAAATTTCCCGGAATTCGGAATACGGAATGAAACTAATTTTCCGGAATACGGAATGCGGAATACGGAATCCTGAATTTTGAGTACTCCAAATGGGTAGAAAAGTTCTAAAAATGCATATCGTGCTATATTTTTGCATTTTTAGCCGCAGAAGTTCAAAAAAGTCAGAGAAAAATTCTTGCAAATTAACGAATATGTTTAAAACCTRGAATAAAACATTTTCCCGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35106</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>266025</contig_pos>
        <strand></strand>
        <context>ataaaacatt[T/C]tcccggaatc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAAATTCTTGCAAATTAACGAATATGTTTAAAACCTGGAATAAAACATT</left_flank>
        <right_flank>TCCCGGAATCCGGAATACGGAATACAAAATCCGGAATCCGGACGCCTCTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGTCCAAGTGAGAATTTGCATTTTATAAATTTCATCTTTCTCAGTGTCTTCAATTTCCCATTTGTTAAATGTTAACAAGCACAAATAATGAAGAATTGTGGATTTGCACTCACCAAAATCTTTCTGGGATCTGGAAAATTATACTAGTGCCGTTTTGATAATTTTTGTTTTGAAAGTCTAAGAAAACCAGAGATGTCCGGAATGACTTTTGAAAGACGGAATCAGAAATCCGAAATCCGGAATAAAGATATTTTCACGGAATCCGGAATCCGGACAAATTAAAATTTCCCGGAATTCGGAATACGGAATGAAACTAATTTTCCGGAATACGGAATGCGGAATACGGAATCCTGAATTTTGAGTACTCCAAATGGGTAGAAAAGTTCTAAAAATGCATATCGTGCTATATTTTTGCATTTTTAGCCGCAGAAGTTCAAAAAAGTCAGAGAAAAATTCTTGCAAATTAACGAATATGTTTAAAACCTGGAATAAAACATTTTCCCGGAATCCGGAATACGGAATACAAAATCCGGAATCCGGACGCCTCTGAAGAAAGCACGGAATGTTATGCTAAAAATCTCGATTTTTGAAAGTTCCGGAAGTTTCAAAAAAATACGAAAATTTCCACGAATTCTGAATTTTTACCTAAATTTGATTATTTTCTTTTTAAACCGTTCTAAACGTGCCTTCGAAACTTGAATATATACCATAAAACCTGAAATAGAAGGTCCCTCTAACTTTTAACTTCGACACAATTTATCTCAATTCCTGTTAAAGATATAAAAAAGATGTCAACTGACAAGTTGTTTATCATAATATGATCAACACTTTATCAGTTGACAGACTTTTGATATCTCTGATAGAAATCGAGATAATGGAGCTCAAAATTAACAGTTCTGGAGCCCTTCTATCACAGTTTTTACAGTAAAACCTGTAATAGAAGGGTCCCCTAATTTTTGACTTTCAGCTAATTAAATATTGGCAATATTCCGAAAATTC</canonical>
            <polymorphic>GGGTCCAAGTGAGAATTTGCATTTTATAAATTTCATCTTTCTCAGTGTCTTCAATTTCCCATTTGTTAAATGTTAACAAGCACAAATAATGAAGAATTGTGGATTTGCACTCACCAAAATCTTTCTGGGATCTGGAAAATTATACTAGTGCCGTTTTGATAATTTTTGTTTTGAAAGTCTAAGAAAACCAGAGATGTCCGGAATGACTTTTGAAAGACGGAATCAGAAATCCGAAATCCGGAATAAAGATATTTTCACGGAATCCGGAATCCGGACAAATTAAAATTTCCCGGAATTCGGAATACGGAATGAAACTAATTTTCCGGAATACGGAATGCGGAATACGGAATCCTGAATTTTGAGTACTCCAAATGGGTAGAAAAGTTCTAAAAATGCATATCGTGCTATATTTTTGCATTTTTAGCCGCAGAAGTTCAAAAAAGTCAGAGAAAAATTCTTGCAAATTAACGAATATGTTTAAAACCTGGAATAAAACATTYTCCCGGAATCCGGAATACGGAATACAAAATCCGGAATCCGGACGCCTCTGAAGAAAGCACGGAATGTTATGCTAAAAATCTCGATTTTTGAAAGTTCCGGAAGTTTCAAAAAAATACGAAAATTTCCACGAATTCTGAATTTTTACCTAAATTTGATTATTTTCTTTTTAAACCGTTCTAAACGTGCCTTCGAAACTTGAATATATACCATAAAACCTGAAATAGAAGGTCCCTCTAACTTTTAACTTCGACACAATTTATCTCAATTCCTGTTAAAGATATAAAAAAGATGTCAACTGACAAGTTGTTTATCATAATATGATCAACACTTTATCAGTTGACAGACTTTTGATATCTCTGATAGAAATCGAGATAATGGAGCTCAAAATTAACAGTTCTGGAGCCCTTCTATCACAGTTTTTACAGTAAAACCTGTAATAGAAGGGTCCCCTAATTTTTGACTTTCAGCTAATTAAATATTGGCAATATTCCGAAAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATAATTTTTGTTTTGAAAGTCT</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTTAGATTTTTGGAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>860</pcr_amplicon_size>
		<canonical_amplicon>TGATAATTTTTGTTTTGAAAGTCTAAGAAAACCAGAGATGTCCGGAATGACTTTTGAAAGACGGAATCAGAAATCCGAAATCCGGAATAAAGATATTTTCACGGAATCCGGAATCCGGACAAATTAAAATTTCCCGGAATTCGGAATACGGAATGAAACTAATTTTCCGGAATACGGAATGCGGAATACGGAATCCTGAATTTTGAGTACTCCAAATGGGTAGAAAAGTTCTAAAAATGCATATCGTGCTATATTTTTGCATTTTTAGCCGCAGAAGTTCAAAAAAGTCAGAGAAAAATTCTTGCAAATTAACGAATATGTTTAAAACCTGGAATAAAACATTTTCCCGGAATCCGGAATACGGAA</canonical_amplicon>
		<polymorphic_amplicon>TGATAATTTTTGTTTTGAAAGTCTAAGAAAACCAGAGATGTCCGGAATGACTTTTGAAAGACGGAATCAGAAATCCGAAATCCGGAATAAAGATATTTTCACGGAATCCGGAATCCGGACAAATTAAAATTTCCCGGAATTCGGAATACGGAATGAAACTAATTTTCCGGAATACGGAATGCGGAATACGGAATCCTGAATTTTGAGTACTCCAAATGGGTAGAAAAGTTCTAAAAATGCATATCGTGCTATATTTTTGCATTTTTAGCCGCAGAAGTTCAAAAAAGTCAGAGAAAAATTCTTGCAAATTAACGAATATGTTTAAAACCTGGAATAAAACATTYTCCCGGAATCCGGAATACGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35107</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>266175</contig_pos>
        <strand></strand>
        <context>TTTTTACCTA[A/T]ATTTGATTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAGTTTCAAAAAAATACGAAAATTTCCACGAATTCTGAATTTTTACCTA</left_flank>
        <right_flank>ATTTGATTATTTTCTTTTTAAACCGTTCTAAACGTGCCTTCGAAACTTGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGTTTTGATAATTTTTGTTTTGAAAGTCTAAGAAAACCAGAGATGTCCGGAATGACTTTTGAAAGACGGAATCAGAAATCCGAAATCCGGAATAAAGATATTTTCACGGAATCCGGAATCCGGACAAATTAAAATTTCCCGGAATTCGGAATACGGAATGAAACTAATTTTCCGGAATACGGAATGCGGAATACGGAATCCTGAATTTTGAGTACTCCAAATGGGTAGAAAAGTTCTAAAAATGCATATCGTGCTATATTTTTGCATTTTTAGCCGCAGAAGTTCAAAAAAGTCAGAGAAAAATTCTTGCAAATTAACGAATATGTTTAAAACCTGGAATAAAACATTTTCCCGGAATCCGGAATACGGAATACAAAATCCGGAATCCGGACGCCTCTGAAGAAAGCACGGAATGTTATGCTAAAAATCTCGATTTTTGAAAGTTCCGGAAGTTTCAAAAAAATACGAAAATTTCCACGAATTCTGAATTTTTACCTAAATTTGATTATTTTCTTTTTAAACCGTTCTAAACGTGCCTTCGAAACTTGAATATATACCATAAAACCTGAAATAGAAGGTCCCTCTAACTTTTAACTTCGACACAATTTATCTCAATTCCTGTTAAAGATATAAAAAAGATGTCAACTGACAAGTTGTTTATCATAATATGATCAACACTTTATCAGTTGACAGACTTTTGATATCTCTGATAGAAATCGAGATAATGGAGCTCAAAATTAACAGTTCTGGAGCCCTTCTATCACAGTTTTTACAGTAAAACCTGTAATAGAAGGGTCCCCTAATTTTTGACTTTCAGCTAATTAAATATTGGCAATATTCCGAAAATTCCAAAAATCTAAAAAGGTTAGAGTTTGCATTTTCAGAATTTTGGTTTTTCGATGGTTCTGATTTTCGAGGTTCCAAAACTCTAATCATTAAAACTGGAGTTCTTTTTTCGCATTTCAAATATCATGTAAGCTCTAAAACACTGTTTTTTCG</canonical>
            <polymorphic>CCGTTTTGATAATTTTTGTTTTGAAAGTCTAAGAAAACCAGAGATGTCCGGAATGACTTTTGAAAGACGGAATCAGAAATCCGAAATCCGGAATAAAGATATTTTCACGGAATCCGGAATCCGGACAAATTAAAATTTCCCGGAATTCGGAATACGGAATGAAACTAATTTTCCGGAATACGGAATGCGGAATACGGAATCCTGAATTTTGAGTACTCCAAATGGGTAGAAAAGTTCTAAAAATGCATATCGTGCTATATTTTTGCATTTTTAGCCGCAGAAGTTCAAAAAAGTCAGAGAAAAATTCTTGCAAATTAACGAATATGTTTAAAACCTGGAATAAAACATTTTCCCGGAATCCGGAATACGGAATACAAAATCCGGAATCCGGACGCCTCTGAAGAAAGCACGGAATGTTATGCTAAAAATCTCGATTTTTGAAAGTTCCGGAAGTTTCAAAAAAATACGAAAATTTCCACGAATTCTGAATTTTTACCTAWATTTGATTATTTTCTTTTTAAACCGTTCTAAACGTGCCTTCGAAACTTGAATATATACCATAAAACCTGAAATAGAAGGTCCCTCTAACTTTTAACTTCGACACAATTTATCTCAATTCCTGTTAAAGATATAAAAAAGATGTCAACTGACAAGTTGTTTATCATAATATGATCAACACTTTATCAGTTGACAGACTTTTGATATCTCTGATAGAAATCGAGATAATGGAGCTCAAAATTAACAGTTCTGGAGCCCTTCTATCACAGTTTTTACAGTAAAACCTGTAATAGAAGGGTCCCCTAATTTTTGACTTTCAGCTAATTAAATATTGGCAATATTCCGAAAATTCCAAAAATCTAAAAAGGTTAGAGTTTGCATTTTCAGAATTTTGGTTTTTCGATGGTTCTGATTTTCGAGGTTCCAAAACTCTAATCATTAAAACTGGAGTTCTTTTTTCGCATTTCAAATATCATGTAAGCTCTAAAACACTGTTTTTTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>346 168 133 115 98 61 40 12 10 10 7</canonical_bands>
                <polymorphic_bands>358 168 133 115 98 61 40 10 10 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>158 122 117 115 105 98 66 40 38 25 23 18 12 10 10 10 10 10 7 6</canonical_bands>
                <polymorphic_bands>158 122 117 117 115 98 66 40 38 25 23 18 10 10 10 10 10 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATAATTTTTGTTTTGAAAGTCT</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTTAGATTTTTGGAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>860</pcr_amplicon_size>
		<canonical_amplicon>TGATAATTTTTGTTTTGAAAGTCTAAGAAAACCAGAGATGTCCGGAATGACTTTTGAAAGACGGAATCAGAAATCCGAAATCCGGAATAAAGATATTTTCACGGAATCCGGAATCCGGACAAATTAAAATTTCCCGGAATTCGGAATACGGAATGAAACTAATTTTCCGGAATACGGAATGCGGAATACGGAATCCTGAATTTTGAGTACTCCAAATGGGTAGAAAAGTTCTAAAAATGCATATCGTGCTATATTTTTGCATTTTTAGCCGCAGAAGTTCAAAAAAGTCAGAGAAAAATTCTTGCAAATTAACGAATATGTTTAAAACCTGGAATAAAACATTTTCCCGGAATCCGGAATACGGAATACAAAATCCGGAATCCGGACGCCTCTGAAGAAAGCACGGAATGTTATGCTAAAAATCTCGATTTTTGAAAGTTCCGGAAGTTTCAAAAAAATACGAAAATTTCCACGAATTCTGAATTTTTACCTAAATTTGATTATTTTCTTTTTAAACCGTTCTAAACGTGCCTTCGAAACTTGAATATATACCATAAAACCTGAAATAGAAGGTCCCTCTAACTTTTAACTTCGACACAATTTATCTCAATTCCTGTTAAAGATATAAAAAAGATGTCAACTGACAAGTTGTTTATCATAATATGATCAACACTTTATCAGTTGACAGACTTTTGATATCTCTGATAGAAATCGAGATAATGGAGCTCAAAATTAACAGTTCTGGAGCCCTTCTATCACAGTTTTTACAGTAAAACCTGTAATAGAAGGGTCCCCTAATTTTTGACTTTCAGCTAATTAAATATTGGCAATATTCCGAAAATTCCAAAAATCTAAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>TGATAATTTTTGTTTTGAAAGTCTAAGAAAACCAGAGATGTCCGGAATGACTTTTGAAAGACGGAATCAGAAATCCGAAATCCGGAATAAAGATATTTTCACGGAATCCGGAATCCGGACAAATTAAAATTTCCCGGAATTCGGAATACGGAATGAAACTAATTTTCCGGAATACGGAATGCGGAATACGGAATCCTGAATTTTGAGTACTCCAAATGGGTAGAAAAGTTCTAAAAATGCATATCGTGCTATATTTTTGCATTTTTAGCCGCAGAAGTTCAAAAAAGTCAGAGAAAAATTCTTGCAAATTAACGAATATGTTTAAAACCTGGAATAAAACATTTTCCCGGAATCCGGAATACGGAATACAAAATCCGGAATCCGGACGCCTCTGAAGAAAGCACGGAATGTTATGCTAAAAATCTCGATTTTTGAAAGTTCCGGAAGTTTCAAAAAAATACGAAAATTTCCACGAATTCTGAATTTTTACCTAWATTTGATTATTTTCTTTTTAAACCGTTCTAAACGTGCCTTCGAAACTTGAATATATACCATAAAACCTGAAATAGAAGGTCCCTCTAACTTTTAACTTCGACACAATTTATCTCAATTCCTGTTAAAGATATAAAAAAGATGTCAACTGACAAGTTGTTTATCATAATATGATCAACACTTTATCAGTTGACAGACTTTTGATATCTCTGATAGAAATCGAGATAATGGAGCTCAAAATTAACAGTTCTGGAGCCCTTCTATCACAGTTTTTACAGTAAAACCTGTAATAGAAGGGTCCCCTAATTTTTGACTTTCAGCTAATTAAATATTGGCAATATTCCGAAAATTCCAAAAATCTAAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35108</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>266197</contig_pos>
        <strand></strand>
        <context>TTCTTTTTAA[A/T]CCGTTCTAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTCCACGAATTCTGAATTTTTACCTAAATTTGATTATTTTCTTTTTAA</left_flank>
        <right_flank>CCGTTCTAAACGTGCCTTCGAAACTTGAATATATACCATAAAACCTGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAGTCTAAGAAAACCAGAGATGTCCGGAATGACTTTTGAAAGACGGAATCAGAAATCCGAAATCCGGAATAAAGATATTTTCACGGAATCCGGAATCCGGACAAATTAAAATTTCCCGGAATTCGGAATACGGAATGAAACTAATTTTCCGGAATACGGAATGCGGAATACGGAATCCTGAATTTTGAGTACTCCAAATGGGTAGAAAAGTTCTAAAAATGCATATCGTGCTATATTTTTGCATTTTTAGCCGCAGAAGTTCAAAAAAGTCAGAGAAAAATTCTTGCAAATTAACGAATATGTTTAAAACCTGGAATAAAACATTTTCCCGGAATCCGGAATACGGAATACAAAATCCGGAATCCGGACGCCTCTGAAGAAAGCACGGAATGTTATGCTAAAAATCTCGATTTTTGAAAGTTCCGGAAGTTTCAAAAAAATACGAAAATTTCCACGAATTCTGAATTTTTACCTAAATTTGATTATTTTCTTTTTAAACCGTTCTAAACGTGCCTTCGAAACTTGAATATATACCATAAAACCTGAAATAGAAGGTCCCTCTAACTTTTAACTTCGACACAATTTATCTCAATTCCTGTTAAAGATATAAAAAAGATGTCAACTGACAAGTTGTTTATCATAATATGATCAACACTTTATCAGTTGACAGACTTTTGATATCTCTGATAGAAATCGAGATAATGGAGCTCAAAATTAACAGTTCTGGAGCCCTTCTATCACAGTTTTTACAGTAAAACCTGTAATAGAAGGGTCCCCTAATTTTTGACTTTCAGCTAATTAAATATTGGCAATATTCCGAAAATTCCAAAAATCTAAAAAGGTTAGAGTTTGCATTTTCAGAATTTTGGTTTTTCGATGGTTCTGATTTTCGAGGTTCCAAAACTCTAATCATTAAAACTGGAGTTCTTTTTTCGCATTTCAAATATCATGTAAGCTCTAAAACACTGTTTTTTCGGAACTCCGAAAATATAAAAACA</canonical>
            <polymorphic>GAAAGTCTAAGAAAACCAGAGATGTCCGGAATGACTTTTGAAAGACGGAATCAGAAATCCGAAATCCGGAATAAAGATATTTTCACGGAATCCGGAATCCGGACAAATTAAAATTTCCCGGAATTCGGAATACGGAATGAAACTAATTTTCCGGAATACGGAATGCGGAATACGGAATCCTGAATTTTGAGTACTCCAAATGGGTAGAAAAGTTCTAAAAATGCATATCGTGCTATATTTTTGCATTTTTAGCCGCAGAAGTTCAAAAAAGTCAGAGAAAAATTCTTGCAAATTAACGAATATGTTTAAAACCTGGAATAAAACATTTTCCCGGAATCCGGAATACGGAATACAAAATCCGGAATCCGGACGCCTCTGAAGAAAGCACGGAATGTTATGCTAAAAATCTCGATTTTTGAAAGTTCCGGAAGTTTCAAAAAAATACGAAAATTTCCACGAATTCTGAATTTTTACCTAAATTTGATTATTTTCTTTTTAAWCCGTTCTAAACGTGCCTTCGAAACTTGAATATATACCATAAAACCTGAAATAGAAGGTCCCTCTAACTTTTAACTTCGACACAATTTATCTCAATTCCTGTTAAAGATATAAAAAAGATGTCAACTGACAAGTTGTTTATCATAATATGATCAACACTTTATCAGTTGACAGACTTTTGATATCTCTGATAGAAATCGAGATAATGGAGCTCAAAATTAACAGTTCTGGAGCCCTTCTATCACAGTTTTTACAGTAAAACCTGTAATAGAAGGGTCCCCTAATTTTTGACTTTCAGCTAATTAAATATTGGCAATATTCCGAAAATTCCAAAAATCTAAAAAGGTTAGAGTTTGCATTTTCAGAATTTTGGTTTTTCGATGGTTCTGATTTTCGAGGTTCCAAAACTCTAATCATTAAAACTGGAGTTCTTTTTTCGCATTTCAAATATCATGTAAGCTCTAAAACACTGTTTTTTCGGAACTCCGAAAATATAAAAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>503 307 190</canonical_bands>
                <polymorphic_bands>693 307</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>502 220 216 31 22 9</canonical_bands>
                <polymorphic_bands>722 216 31 22 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATAATTTTTGTTTTGAAAGTCT</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTTAGATTTTTGGAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>860</pcr_amplicon_size>
		<canonical_amplicon>AACCGTTCTAAACGTGCCTTCGAAACTTGAATATATACCATAAAACCTGAAATAGAAGGTCCCTCTAACTTTTAACTTCGACACAATTTATCTCAATTCCTGTTAAAGATATAAAAAAGATGTCAACTGACAAGTTGTTTATCATAATATGATCAACACTTTATCAGTTGACAGACTTTTGATATCTCTGATAGAAATCGAGATAATGGAGCTCAAAATTAACAGTTCTGGAGCCCTTCTATCACAGTTTTTACAGTAAAACCTGTAATAGAAGGGTCCCCTAATTTTTGACTTTCAGCTAATTAAATATTGGCAATATTCCGAAAATTCCAAAAATCTAAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>AWCCGTTCTAAACGTGCCTTCGAAACTTGAATATATACCATAAAACCTGAAATAGAAGGTCCCTCTAACTTTTAACTTCGACACAATTTATCTCAATTCCTGTTAAAGATATAAAAAAGATGTCAACTGACAAGTTGTTTATCATAATATGATCAACACTTTATCAGTTGACAGACTTTTGATATCTCTGATAGAAATCGAGATAATGGAGCTCAAAATTAACAGTTCTGGAGCCCTTCTATCACAGTTTTTACAGTAAAACCTGTAATAGAAGGGTCCCCTAATTTTTGACTTTCAGCTAATTAAATATTGGCAATATTCCGAAAATTCCAAAAATCTAAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35109</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>266209</contig_pos>
        <strand></strand>
        <context>CGTTCTAAAC[G/A]TGCCTTCGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCTGAATTTTTACCTAAATTTGATTATTTTCTTTTTAAACCGTTCTAAAC</left_flank>
        <right_flank>TGCCTTCGAAACTTGAATATATACCATAAAACCTGAAATAGAAGGTCCCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACCAGAGATGTCCGGAATGACTTTTGAAAGACGGAATCAGAAATCCGAAATCCGGAATAAAGATATTTTCACGGAATCCGGAATCCGGACAAATTAAAATTTCCCGGAATTCGGAATACGGAATGAAACTAATTTTCCGGAATACGGAATGCGGAATACGGAATCCTGAATTTTGAGTACTCCAAATGGGTAGAAAAGTTCTAAAAATGCATATCGTGCTATATTTTTGCATTTTTAGCCGCAGAAGTTCAAAAAAGTCAGAGAAAAATTCTTGCAAATTAACGAATATGTTTAAAACCTGGAATAAAACATTTTCCCGGAATCCGGAATACGGAATACAAAATCCGGAATCCGGACGCCTCTGAAGAAAGCACGGAATGTTATGCTAAAAATCTCGATTTTTGAAAGTTCCGGAAGTTTCAAAAAAATACGAAAATTTCCACGAATTCTGAATTTTTACCTAAATTTGATTATTTTCTTTTTAAACCGTTCTAAACGTGCCTTCGAAACTTGAATATATACCATAAAACCTGAAATAGAAGGTCCCTCTAACTTTTAACTTCGACACAATTTATCTCAATTCCTGTTAAAGATATAAAAAAGATGTCAACTGACAAGTTGTTTATCATAATATGATCAACACTTTATCAGTTGACAGACTTTTGATATCTCTGATAGAAATCGAGATAATGGAGCTCAAAATTAACAGTTCTGGAGCCCTTCTATCACAGTTTTTACAGTAAAACCTGTAATAGAAGGGTCCCCTAATTTTTGACTTTCAGCTAATTAAATATTGGCAATATTCCGAAAATTCCAAAAATCTAAAAAGGTTAGAGTTTGCATTTTCAGAATTTTGGTTTTTCGATGGTTCTGATTTTCGAGGTTCCAAAACTCTAATCATTAAAACTGGAGTTCTTTTTTCGCATTTCAAATATCATGTAAGCTCTAAAACACTGTTTTTTCGGAACTCCGAAAATATAAAAACAAAAAAAATTCTG</canonical>
            <polymorphic>AAACCAGAGATGTCCGGAATGACTTTTGAAAGACGGAATCAGAAATCCGAAATCCGGAATAAAGATATTTTCACGGAATCCGGAATCCGGACAAATTAAAATTTCCCGGAATTCGGAATACGGAATGAAACTAATTTTCCGGAATACGGAATGCGGAATACGGAATCCTGAATTTTGAGTACTCCAAATGGGTAGAAAAGTTCTAAAAATGCATATCGTGCTATATTTTTGCATTTTTAGCCGCAGAAGTTCAAAAAAGTCAGAGAAAAATTCTTGCAAATTAACGAATATGTTTAAAACCTGGAATAAAACATTTTCCCGGAATCCGGAATACGGAATACAAAATCCGGAATCCGGACGCCTCTGAAGAAAGCACGGAATGTTATGCTAAAAATCTCGATTTTTGAAAGTTCCGGAAGTTTCAAAAAAATACGAAAATTTCCACGAATTCTGAATTTTTACCTAAATTTGATTATTTTCTTTTTAAACCGTTCTAAACRTGCCTTCGAAACTTGAATATATACCATAAAACCTGAAATAGAAGGTCCCTCTAACTTTTAACTTCGACACAATTTATCTCAATTCCTGTTAAAGATATAAAAAAGATGTCAACTGACAAGTTGTTTATCATAATATGATCAACACTTTATCAGTTGACAGACTTTTGATATCTCTGATAGAAATCGAGATAATGGAGCTCAAAATTAACAGTTCTGGAGCCCTTCTATCACAGTTTTTACAGTAAAACCTGTAATAGAAGGGTCCCCTAATTTTTGACTTTCAGCTAATTAAATATTGGCAATATTCCGAAAATTCCAAAAATCTAAAAAGGTTAGAGTTTGCATTTTCAGAATTTTGGTTTTTCGATGGTTCTGATTTTCGAGGTTCCAAAACTCTAATCATTAAAACTGGAGTTCTTTTTTCGCATTTCAAATATCATGTAAGCTCTAAAACACTGTTTTTTCGGAACTCCGAAAATATAAAAACAAAAAAAATTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>225 155 147 86 75 73 69 67 58 45</canonical_bands>
                <polymorphic_bands>225 155 147 125 86 75 73 69 45</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATAATTTTTGTTTTGAAAGTCT</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTTAGATTTTTGGAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>860</pcr_amplicon_size>
		<canonical_amplicon>CGTGCCTTCGAAACTTGAATATATACCATAAAACCTGAAATAGAAGGTCCCTCTAACTTTTAACTTCGACACAATTTATCTCAATTCCTGTTAAAGATATAAAAAAGATGTCAACTGACAAGTTGTTTATCATAATATGATCAACACTTTATCAGTTGACAGACTTTTGATATCTCTGATAGAAATCGAGATAATGGAGCTCAAAATTAACAGTTCTGGAGCCCTTCTATCACAGTTTTTACAGTAAAACCTGTAATAGAAGGGTCCCCTAATTTTTGACTTTCAGCTAATTAAATATTGGCAATATTCCGAAAATTCCAAAAATCTAAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>CRTGCCTTCGAAACTTGAATATATACCATAAAACCTGAAATAGAAGGTCCCTCTAACTTTTAACTTCGACACAATTTATCTCAATTCCTGTTAAAGATATAAAAAAGATGTCAACTGACAAGTTGTTTATCATAATATGATCAACACTTTATCAGTTGACAGACTTTTGATATCTCTGATAGAAATCGAGATAATGGAGCTCAAAATTAACAGTTCTGGAGCCCTTCTATCACAGTTTTTACAGTAAAACCTGTAATAGAAGGGTCCCCTAATTTTTGACTTTCAGCTAATTAAATATTGGCAATATTCCGAAAATTCCAAAAATCTAAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35110</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>266235</contig_pos>
        <strand></strand>
        <context>aatatatacc[A/G]taaaacctga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCTTTTTAAACCGTTCTAAACGTGCCTTCGAAACTTGAATATATACC</left_flank>
        <right_flank>TAAAACCTGAAATAGAAGGTCCCTCTAACTTTTAACTTCGACACAATTTA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAGACGGAATCAGAAATCCGAAATCCGGAATAAAGATATTTTCACGGAATCCGGAATCCGGACAAATTAAAATTTCCCGGAATTCGGAATACGGAATGAAACTAATTTTCCGGAATACGGAATGCGGAATACGGAATCCTGAATTTTGAGTACTCCAAATGGGTAGAAAAGTTCTAAAAATGCATATCGTGCTATATTTTTGCATTTTTAGCCGCAGAAGTTCAAAAAAGTCAGAGAAAAATTCTTGCAAATTAACGAATATGTTTAAAACCTGGAATAAAACATTTTCCCGGAATCCGGAATACGGAATACAAAATCCGGAATCCGGACGCCTCTGAAGAAAGCACGGAATGTTATGCTAAAAATCTCGATTTTTGAAAGTTCCGGAAGTTTCAAAAAAATACGAAAATTTCCACGAATTCTGAATTTTTACCTAAATTTGATTATTTTCTTTTTAAACCGTTCTAAACGTGCCTTCGAAACTTGAATATATACCATAAAACCTGAAATAGAAGGTCCCTCTAACTTTTAACTTCGACACAATTTATCTCAATTCCTGTTAAAGATATAAAAAAGATGTCAACTGACAAGTTGTTTATCATAATATGATCAACACTTTATCAGTTGACAGACTTTTGATATCTCTGATAGAAATCGAGATAATGGAGCTCAAAATTAACAGTTCTGGAGCCCTTCTATCACAGTTTTTACAGTAAAACCTGTAATAGAAGGGTCCCCTAATTTTTGACTTTCAGCTAATTAAATATTGGCAATATTCCGAAAATTCCAAAAATCTAAAAAGGTTAGAGTTTGCATTTTCAGAATTTTGGTTTTTCGATGGTTCTGATTTTCGAGGTTCCAAAACTCTAATCATTAAAACTGGAGTTCTTTTTTCGCATTTCAAATATCATGTAAGCTCTAAAACACTGTTTTTTCGGAACTCCGAAAATATAAAAACAAAAAAAATTCTGAAAAAACTGACCTGTAAACATACAAA</canonical>
            <polymorphic>TGAAAGACGGAATCAGAAATCCGAAATCCGGAATAAAGATATTTTCACGGAATCCGGAATCCGGACAAATTAAAATTTCCCGGAATTCGGAATACGGAATGAAACTAATTTTCCGGAATACGGAATGCGGAATACGGAATCCTGAATTTTGAGTACTCCAAATGGGTAGAAAAGTTCTAAAAATGCATATCGTGCTATATTTTTGCATTTTTAGCCGCAGAAGTTCAAAAAAGTCAGAGAAAAATTCTTGCAAATTAACGAATATGTTTAAAACCTGGAATAAAACATTTTCCCGGAATCCGGAATACGGAATACAAAATCCGGAATCCGGACGCCTCTGAAGAAAGCACGGAATGTTATGCTAAAAATCTCGATTTTTGAAAGTTCCGGAAGTTTCAAAAAAATACGAAAATTTCCACGAATTCTGAATTTTTACCTAAATTTGATTATTTTCTTTTTAAACCGTTCTAAACGTGCCTTCGAAACTTGAATATATACCRTAAAACCTGAAATAGAAGGTCCCTCTAACTTTTAACTTCGACACAATTTATCTCAATTCCTGTTAAAGATATAAAAAAGATGTCAACTGACAAGTTGTTTATCATAATATGATCAACACTTTATCAGTTGACAGACTTTTGATATCTCTGATAGAAATCGAGATAATGGAGCTCAAAATTAACAGTTCTGGAGCCCTTCTATCACAGTTTTTACAGTAAAACCTGTAATAGAAGGGTCCCCTAATTTTTGACTTTCAGCTAATTAAATATTGGCAATATTCCGAAAATTCCAAAAATCTAAAAAGGTTAGAGTTTGCATTTTCAGAATTTTGGTTTTTCGATGGTTCTGATTTTCGAGGTTCCAAAACTCTAATCATTAAAACTGGAGTTCTTTTTTCGCATTTCAAATATCATGTAAGCTCTAAAACACTGTTTTTTCGGAACTCCGAAAATATAAAAACAAAAAAAATTCTGAAAAAACTGACCTGTAAACATACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATAATTTTTGTTTTGAAAGTCT</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTTAGATTTTTGGAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>860</pcr_amplicon_size>
		<canonical_amplicon>CATAAAACCTGAAATAGAAGGTCCCTCTAACTTTTAACTTCGACACAATTTATCTCAATTCCTGTTAAAGATATAAAAAAGATGTCAACTGACAAGTTGTTTATCATAATATGATCAACACTTTATCAGTTGACAGACTTTTGATATCTCTGATAGAAATCGAGATAATGGAGCTCAAAATTAACAGTTCTGGAGCCCTTCTATCACAGTTTTTACAGTAAAACCTGTAATAGAAGGGTCCCCTAATTTTTGACTTTCAGCTAATTAAATATTGGCAATATTCCGAAAATTCCAAAAATCTAAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>CRTAAAACCTGAAATAGAAGGTCCCTCTAACTTTTAACTTCGACACAATTTATCTCAATTCCTGTTAAAGATATAAAAAAGATGTCAACTGACAAGTTGTTTATCATAATATGATCAACACTTTATCAGTTGACAGACTTTTGATATCTCTGATAGAAATCGAGATAATGGAGCTCAAAATTAACAGTTCTGGAGCCCTTCTATCACAGTTTTTACAGTAAAACCTGTAATAGAAGGGTCCCCTAATTTTTGACTTTCAGCTAATTAAATATTGGCAATATTCCGAAAATTCCAAAAATCTAAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35111</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>266255</contig_pos>
        <strand></strand>
        <context>aaatagaagg[T/G]ccctctaact</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AAACGTGCCTTCGAAACTTGAATATATACCATAAAACCTGAAATAGAAGG</left_flank>
        <right_flank>CCCTCTAACTTTTAACTTCGACACAATTTATCTCAATTCCTGTTAAAGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGAAATCCGGAATAAAGATATTTTCACGGAATCCGGAATCCGGACAAATTAAAATTTCCCGGAATTCGGAATACGGAATGAAACTAATTTTCCGGAATACGGAATGCGGAATACGGAATCCTGAATTTTGAGTACTCCAAATGGGTAGAAAAGTTCTAAAAATGCATATCGTGCTATATTTTTGCATTTTTAGCCGCAGAAGTTCAAAAAAGTCAGAGAAAAATTCTTGCAAATTAACGAATATGTTTAAAACCTGGAATAAAACATTTTCCCGGAATCCGGAATACGGAATACAAAATCCGGAATCCGGACGCCTCTGAAGAAAGCACGGAATGTTATGCTAAAAATCTCGATTTTTGAAAGTTCCGGAAGTTTCAAAAAAATACGAAAATTTCCACGAATTCTGAATTTTTACCTAAATTTGATTATTTTCTTTTTAAACCGTTCTAAACGTGCCTTCGAAACTTGAATATATACCATAAAACCTGAAATAGAAGGTCCCTCTAACTTTTAACTTCGACACAATTTATCTCAATTCCTGTTAAAGATATAAAAAAGATGTCAACTGACAAGTTGTTTATCATAATATGATCAACACTTTATCAGTTGACAGACTTTTGATATCTCTGATAGAAATCGAGATAATGGAGCTCAAAATTAACAGTTCTGGAGCCCTTCTATCACAGTTTTTACAGTAAAACCTGTAATAGAAGGGTCCCCTAATTTTTGACTTTCAGCTAATTAAATATTGGCAATATTCCGAAAATTCCAAAAATCTAAAAAGGTTAGAGTTTGCATTTTCAGAATTTTGGTTTTTCGATGGTTCTGATTTTCGAGGTTCCAAAACTCTAATCATTAAAACTGGAGTTCTTTTTTCGCATTTCAAATATCATGTAAGCTCTAAAACACTGTTTTTTCGGAACTCCGAAAATATAAAAACAAAAAAAATTCTGAAAAAACTGACCTGTAAACATACAAAAGACAACGAACACATTGTGT</canonical>
            <polymorphic>CCGAAATCCGGAATAAAGATATTTTCACGGAATCCGGAATCCGGACAAATTAAAATTTCCCGGAATTCGGAATACGGAATGAAACTAATTTTCCGGAATACGGAATGCGGAATACGGAATCCTGAATTTTGAGTACTCCAAATGGGTAGAAAAGTTCTAAAAATGCATATCGTGCTATATTTTTGCATTTTTAGCCGCAGAAGTTCAAAAAAGTCAGAGAAAAATTCTTGCAAATTAACGAATATGTTTAAAACCTGGAATAAAACATTTTCCCGGAATCCGGAATACGGAATACAAAATCCGGAATCCGGACGCCTCTGAAGAAAGCACGGAATGTTATGCTAAAAATCTCGATTTTTGAAAGTTCCGGAAGTTTCAAAAAAATACGAAAATTTCCACGAATTCTGAATTTTTACCTAAATTTGATTATTTTCTTTTTAAACCGTTCTAAACGTGCCTTCGAAACTTGAATATATACCATAAAACCTGAAATAGAAGGKCCCTCTAACTTTTAACTTCGACACAATTTATCTCAATTCCTGTTAAAGATATAAAAAAGATGTCAACTGACAAGTTGTTTATCATAATATGATCAACACTTTATCAGTTGACAGACTTTTGATATCTCTGATAGAAATCGAGATAATGGAGCTCAAAATTAACAGTTCTGGAGCCCTTCTATCACAGTTTTTACAGTAAAACCTGTAATAGAAGGGTCCCCTAATTTTTGACTTTCAGCTAATTAAATATTGGCAATATTCCGAAAATTCCAAAAATCTAAAAAGGTTAGAGTTTGCATTTTCAGAATTTTGGTTTTTCGATGGTTCTGATTTTCGAGGTTCCAAAACTCTAATCATTAAAACTGGAGTTCTTTTTTCGCATTTCAAATATCATGTAAGCTCTAAAACACTGTTTTTTCGGAACTCCGAAAATATAAAAACAAAAAAAATTCTGAAAAAACTGACCTGTAAACATACAAAAGACAACGAACACATTGTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>498 285 217</canonical_bands>
                <polymorphic_bands>715 285</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>498 285 217</canonical_bands>
                <polymorphic_bands>715 285</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATAATTTTTGTTTTGAAAGTCT</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTTAGATTTTTGGAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>860</pcr_amplicon_size>
		<canonical_amplicon>GTCCCTCTAACTTTTAACTTCGACACAATTTATCTCAATTCCTGTTAAAGATATAAAAAAGATGTCAACTGACAAGTTGTTTATCATAATATGATCAACACTTTATCAGTTGACAGACTTTTGATATCTCTGATAGAAATCGAGATAATGGAGCTCAAAATTAACAGTTCTGGAGCCCTTCTATCACAGTTTTTACAGTAAAACCTGTAATAGAAGGGTCCCCTAATTTTTGACTTTCAGCTAATTAAATATTGGCAATATTCCGAAAATTCCAAAAATCTAAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>GKCCCTCTAACTTTTAACTTCGACACAATTTATCTCAATTCCTGTTAAAGATATAAAAAAGATGTCAACTGACAAGTTGTTTATCATAATATGATCAACACTTTATCAGTTGACAGACTTTTGATATCTCTGATAGAAATCGAGATAATGGAGCTCAAAATTAACAGTTCTGGAGCCCTTCTATCACAGTTTTTACAGTAAAACCTGTAATAGAAGGGTCCCCTAATTTTTGACTTTCAGCTAATTAAATATTGGCAATATTCCGAAAATTCCAAAAATCTAAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35112</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>266862</contig_pos>
        <strand></strand>
        <context>aattagaaat[T/C]aaagttttga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGTTTTTTCTTGTCAAGTTCTACATTTTCGCTTTAAAATTAATTAGAAAT</left_flank>
        <right_flank>AAAGTTTTGAGCCGAGTTACGGGTCGGACAATGAACGTCCAGGTTGGCTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGACAGACTTTTGATATCTCTGATAGAAATCGAGATAATGGAGCTCAAAATTAACAGTTCTGGAGCCCTTCTATCACAGTTTTTACAGTAAAACCTGTAATAGAAGGGTCCCCTAATTTTTGACTTTCAGCTAATTAAATATTGGCAATATTCCGAAAATTCCAAAAATCTAAAAAGGTTAGAGTTTGCATTTTCAGAATTTTGGTTTTTCGATGGTTCTGATTTTCGAGGTTCCAAAACTCTAATCATTAAAACTGGAGTTCTTTTTTCGCATTTCAAATATCATGTAAGCTCTAAAACACTGTTTTTTCGGAACTCCGAAAATATAAAAACAAAAAAAATTCTGAAAAAACTGACCTGTAAACATACAAAAGACAACGAACACATTGTGTCTCAAAATAGGGCATATGCAGATGTTGTTTTTTAATTTTGAATATAATATTCCAGAAGTTTTTTCTTGTCAAGTTCTACATTTTCGCTTTAAAATTAATTAGAAATTAAAGTTTTGAGCCGAGTTACGGGTCGGACAATGAACGTCCAGGTTGGCTTATCACCCTCGTCGGTGCATAAATCGGCTCAAAATAGAAACTTTTGATTGAATCAAAAAAAGAGATGGTGGAACTCAATGAGATCTATACTCACCTACTAATCCAACGCATGTTAAGGTTGGATGGCTCGTCAATATATCATATATCATTTGAGGAGTCGCCAAGTTTCGACTTAAATCTAGCATTTGAAGGTTCGGCAAGACTTTTCTGCACTTCCAGAAATGCTCCACATTTTTCAAATTGTATTTTCTGAAAAAAGATTACATAGTTTATATAAAACGACACCTGGTAAGTTTCAAGGTGAGCTAACTTTTGTCGTGAATGTTCTAACGCACTCTGAGTTCAATAATCTTAGCTCTTTTGAGATTTTTGCATAATATCACTAATATTTTGACAGTTTACGAACGTTTGATATGCTATGTTTAAGCCGAGATAATTGAGCTCAAAAAGC</canonical>
            <polymorphic>TTGACAGACTTTTGATATCTCTGATAGAAATCGAGATAATGGAGCTCAAAATTAACAGTTCTGGAGCCCTTCTATCACAGTTTTTACAGTAAAACCTGTAATAGAAGGGTCCCCTAATTTTTGACTTTCAGCTAATTAAATATTGGCAATATTCCGAAAATTCCAAAAATCTAAAAAGGTTAGAGTTTGCATTTTCAGAATTTTGGTTTTTCGATGGTTCTGATTTTCGAGGTTCCAAAACTCTAATCATTAAAACTGGAGTTCTTTTTTCGCATTTCAAATATCATGTAAGCTCTAAAACACTGTTTTTTCGGAACTCCGAAAATATAAAAACAAAAAAAATTCTGAAAAAACTGACCTGTAAACATACAAAAGACAACGAACACATTGTGTCTCAAAATAGGGCATATGCAGATGTTGTTTTTTAATTTTGAATATAATATTCCAGAAGTTTTTTCTTGTCAAGTTCTACATTTTCGCTTTAAAATTAATTAGAAATYAAAGTTTTGAGCCGAGTTACGGGTCGGACAATGAACGTCCAGGTTGGCTTATCACCCTCGTCGGTGCATAAATCGGCTCAAAATAGAAACTTTTGATTGAATCAAAAAAAGAGATGGTGGAACTCAATGAGATCTATACTCACCTACTAATCCAACGCATGTTAAGGTTGGATGGCTCGTCAATATATCATATATCATTTGAGGAGTCGCCAAGTTTCGACTTAAATCTAGCATTTGAAGGTTCGGCAAGACTTTTCTGCACTTCCAGAAATGCTCCACATTTTTCAAATTGTATTTTCTGAAAAAAGATTACATAGTTTATATAAAACGACACCTGGTAAGTTTCAAGGTGAGCTAACTTTTGTCGTGAATGTTCTAACGCACTCTGAGTTCAATAATCTTAGCTCTTTTGAGATTTTTGCATAATATCACTAATATTTTGACAGTTTACGAACGTTTGATATGCTATGTTTAAGCCGAGATAATTGAGCTCAAAAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>250 175 163 114 84 60 57 52 28 11 6</canonical_bands>
                <polymorphic_bands>250 175 174 114 84 60 57 52 28 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>291 196 142 86 66 59 49 40 25 18 17 7 4</canonical_bands>
                <polymorphic_bands>298 196 142 86 66 59 49 40 25 18 17 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCATATGCAGATGTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTAACATGCGTTGGATTAGTA</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>GGCATATGCAGATGTTGTTTTTTAATTTTGAATATAATATTCCAGAAGTTTTTTCTTGTCAAGTTCTACATTTTCGCTTTAAAATTAATTAGAAATTAAAGTTTTGAGCCGAGTTACGGGTCGGACAATGAACGTCCAGGTTGGCTTATCACCCTCGTCGGTGCATAAATCGGCTCAAAATAGAAACTTTTGATTGAATCAAAAAAAGAGATGGTGGAACTCAATGAGATCTATACTCACCTACTAATCCAACGCATGTTAAG</canonical_amplicon>
		<polymorphic_amplicon>GGCATATGCAGATGTTGTTTTTTAATTTTGAATATAATATTCCAGAAGTTTTTTCTTGTCAAGTTCTACATTTTCGCTTTAAAATTAATTAGAAATYAAAGTTTTGAGCCGAGTTACGGGTCGGACAATGAACGTCCAGGTTGGCTTATCACCCTCGTCGGTGCATAAATCGGCTCAAAATAGAAACTTTTGATTGAATCAAAAAAAGAGATGGTGGAACTCAATGAGATCTATACTCACCTACTAATCCAACGCATGTTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35113</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>266903</contig_pos>
        <strand>+</strand>
        <context>ATGAACGTCC[A/T]GGTTGGCTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTAGAAATTAAAGTTTTGAGCCGAGTTACGGGTCGGACAATGAACGTCC</left_flank>
        <right_flank>GGTTGGCTTATCACCCTCGTCGGTGCATAAATCGGCTCAAAATAGAAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGCTCAAAATTAACAGTTCTGGAGCCCTTCTATCACAGTTTTTACAGTAAAACCTGTAATAGAAGGGTCCCCTAATTTTTGACTTTCAGCTAATTAAATATTGGCAATATTCCGAAAATTCCAAAAATCTAAAAAGGTTAGAGTTTGCATTTTCAGAATTTTGGTTTTTCGATGGTTCTGATTTTCGAGGTTCCAAAACTCTAATCATTAAAACTGGAGTTCTTTTTTCGCATTTCAAATATCATGTAAGCTCTAAAACACTGTTTTTTCGGAACTCCGAAAATATAAAAACAAAAAAAATTCTGAAAAAACTGACCTGTAAACATACAAAAGACAACGAACACATTGTGTCTCAAAATAGGGCATATGCAGATGTTGTTTTTTAATTTTGAATATAATATTCCAGAAGTTTTTTCTTGTCAAGTTCTACATTTTCGCTTTAAAATTAATTAGAAATTAAAGTTTTGAGCCGAGTTACGGGTCGGACAATGAACGTCCAGGTTGGCTTATCACCCTCGTCGGTGCATAAATCGGCTCAAAATAGAAACTTTTGATTGAATCAAAAAAAGAGATGGTGGAACTCAATGAGATCTATACTCACCTACTAATCCAACGCATGTTAAGGTTGGATGGCTCGTCAATATATCATATATCATTTGAGGAGTCGCCAAGTTTCGACTTAAATCTAGCATTTGAAGGTTCGGCAAGACTTTTCTGCACTTCCAGAAATGCTCCACATTTTTCAAATTGTATTTTCTGAAAAAAGATTACATAGTTTATATAAAACGACACCTGGTAAGTTTCAAGGTGAGCTAACTTTTGTCGTGAATGTTCTAACGCACTCTGAGTTCAATAATCTTAGCTCTTTTGAGATTTTTGCATAATATCACTAATATTTTGACAGTTTACGAACGTTTGATATGCTATGTTTAAGCCGAGATAATTGAGCTCAAAAAGCAGCAACGCGCGAAACGCGCCATGCTACAAGAAAAGCGCAAA</canonical>
            <polymorphic>GAGCTCAAAATTAACAGTTCTGGAGCCCTTCTATCACAGTTTTTACAGTAAAACCTGTAATAGAAGGGTCCCCTAATTTTTGACTTTCAGCTAATTAAATATTGGCAATATTCCGAAAATTCCAAAAATCTAAAAAGGTTAGAGTTTGCATTTTCAGAATTTTGGTTTTTCGATGGTTCTGATTTTCGAGGTTCCAAAACTCTAATCATTAAAACTGGAGTTCTTTTTTCGCATTTCAAATATCATGTAAGCTCTAAAACACTGTTTTTTCGGAACTCCGAAAATATAAAAACAAAAAAAATTCTGAAAAAACTGACCTGTAAACATACAAAAGACAACGAACACATTGTGTCTCAAAATAGGGCATATGCAGATGTTGTTTTTTAATTTTGAATATAATATTCCAGAAGTTTTTTCTTGTCAAGTTCTACATTTTCGCTTTAAAATTAATTAGAAATTAAAGTTTTGAGCCGAGTTACGGGTCGGACAATGAACGTCCWGGTTGGCTTATCACCCTCGTCGGTGCATAAATCGGCTCAAAATAGAAACTTTTGATTGAATCAAAAAAAGAGATGGTGGAACTCAATGAGATCTATACTCACCTACTAATCCAACGCATGTTAAGGTTGGATGGCTCGTCAATATATCATATATCATTTGAGGAGTCGCCAAGTTTCGACTTAAATCTAGCATTTGAAGGTTCGGCAAGACTTTTCTGCACTTCCAGAAATGCTCCACATTTTTCAAATTGTATTTTCTGAAAAAAGATTACATAGTTTATATAAAACGACACCTGGTAAGTTTCAAGGTGAGCTAACTTTTGTCGTGAATGTTCTAACGCACTCTGAGTTCAATAATCTTAGCTCTTTTGAGATTTTTGCATAATATCACTAATATTTTGACAGTTTACGAACGTTTGATATGCTATGTTTAAGCCGAGATAATTGAGCTCAAAAAGCAGCAACGCGCGAAACGCGCCATGCTACAAGAAAAGCGCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>499 295 206</canonical_bands>
                <polymorphic_bands>794 206</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCATATGCAGATGTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTAACATGCGTTGGATTAGTA</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>GGCATATGCAGATGTTGTTTTTTAATTTTGAATATAATATTCCAGAAGTTTTTTCTTGTCAAGTTCTACATTTTCGCTTTAAAATTAATTAGAAATTAAAGTTTTGAGCCGAGTTACGGGTCGGACAATGAACGTCCAGGTTGGCTTATCACCCTCGTCGGTGCATAAATCGGCTCAAAATAGAAACTTTTGATTGAATCAAAAAAAGAGATGGTGGAACTCAATGAGATCTATACTCACCTACTAATCCAACGCATGTTAAG</canonical_amplicon>
		<polymorphic_amplicon>GGCATATGCAGATGTTGTTTTTTAATTTTGAATATAATATTCCAGAAGTTTTTTCTTGTCAAGTTCTACATTTTCGCTTTAAAATTAATTAGAAATTAAAGTTTTGAGCCGAGTTACGGGTCGGACAATGAACGTCCWGGTTGGCTTATCACCCTCGTCGGTGCATAAATCGGCTCAAAATAGAAACTTTTGATTGAATCAAAAAAAGAGATGGTGGAACTCAATGAGATCTATACTCACCTACTAATCCAACGCATGTTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35114</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>267005</contig_pos>
        <strand>+</strand>
        <context>tctataCTCA[C/G]YTACTAATCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTGATTGAATCAAAAAAAGAGATGGTGGAACTCAATGAGATCTATACTCA</left_flank>
        <right_flank>CTACTAATCCAACGCATGTTAAGGTTGGATGGCTCGTCAATATATCATAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGCAATATTCCGAAAATTCCAAAAATCTAAAAAGGTTAGAGTTTGCATTTTCAGAATTTTGGTTTTTCGATGGTTCTGATTTTCGAGGTTCCAAAACTCTAATCATTAAAACTGGAGTTCTTTTTTCGCATTTCAAATATCATGTAAGCTCTAAAACACTGTTTTTTCGGAACTCCGAAAATATAAAAACAAAAAAAATTCTGAAAAAACTGACCTGTAAACATACAAAAGACAACGAACACATTGTGTCTCAAAATAGGGCATATGCAGATGTTGTTTTTTAATTTTGAATATAATATTCCAGAAGTTTTTTCTTGTCAAGTTCTACATTTTCGCTTTAAAATTAATTAGAAATTAAAGTTTTGAGCCGAGTTACGGGTCGGACAATGAACGTCCAGGTTGGCTTATCACCCTCGTCGGTGCATAAATCGGCTCAAAATAGAAACTTTTGATTGAATCAAAAAAAGAGATGGTGGAACTCAATGAGATCTATACTCACCTACTAATCCAACGCATGTTAAGGTTGGATGGCTCGTCAATATATCATATATCATTTGAGGAGTCGCCAAGTTTCGACTTAAATCTAGCATTTGAAGGTTCGGCAAGACTTTTCTGCACTTCCAGAAATGCTCCACATTTTTCAAATTGTATTTTCTGAAAAAAGATTACATAGTTTATATAAAACGACACCTGGTAAGTTTCAAGGTGAGCTAACTTTTGTCGTGAATGTTCTAACGCACTCTGAGTTCAATAATCTTAGCTCTTTTGAGATTTTTGCATAATATCACTAATATTTTGACAGTTTACGAACGTTTGATATGCTATGTTTAAGCCGAGATAATTGAGCTCAAAAAGCAGCAACGCGCGAAACGCGCCATGCTACAAGAAAAGCGCAAACGACTCACCGATCACCAGAAATGTCCAAAACACGAAGGTTCTTCAAATCAAACACGTCTTCAATATCTTCCTAACTGGCTAGCTCCAAATCACAAGCCATCA</canonical>
            <polymorphic>TGGCAATATTCCGAAAATTCCAAAAATCTAAAAAGGTTAGAGTTTGCATTTTCAGAATTTTGGTTTTTCGATGGTTCTGATTTTCGAGGTTCCAAAACTCTAATCATTAAAACTGGAGTTCTTTTTTCGCATTTCAAATATCATGTAAGCTCTAAAACACTGTTTTTTCGGAACTCCGAAAATATAAAAACAAAAAAAATTCTGAAAAAACTGACCTGTAAACATACAAAAGACAACGAACACATTGTGTCTCAAAATAGGGCATATGCAGATGTTGTTTTTTAATTTTGAATATAATATTCCAGAAGTTTTTTCTTGTCAAGTTCTACATTTTCGCTTTAAAATTAATTAGAAATTAAAGTTTTGAGCCGAGTTACGGGTCGGACAATGAACGTCCAGGTTGGCTTATCACCCTCGTCGGTGCATAAATCGGCTCAAAATAGAAACTTTTGATTGAATCAAAAAAAGAGATGGTGGAACTCAATGAGATCTATACTCASCTACTAATCCAACGCATGTTAAGGTTGGATGGCTCGTCAATATATCATATATCATTTGAGGAGTCGCCAAGTTTCGACTTAAATCTAGCATTTGAAGGTTCGGCAAGACTTTTCTGCACTTCCAGAAATGCTCCACATTTTTCAAATTGTATTTTCTGAAAAAAGATTACATAGTTTATATAAAACGACACCTGGTAAGTTTCAAGGTGAGCTAACTTTTGTCGTGAATGTTCTAACGCACTCTGAGTTCAATAATCTTAGCTCTTTTGAGATTTTTGCATAATATCACTAATATTTTGACAGTTTACGAACGTTTGATATGCTATGTTTAAGCCGAGATAATTGAGCTCAAAAAGCAGCAACGCGCGAAACGCGCCATGCTACAAGAAAAGCGCAAACGACTCACCGATCACCAGAAATGTCCAAAACACGAAGGTTCTTCAAATCAAACACGTCTTCAATATCTTCCTAACTGGCTAGCTCCAAATCACAAGCCATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>162 159 119 117 83 55 53 48 38 23 22 19 18 17 17 14 12 10 7 7</canonical_bands>
                <polymorphic_bands>162 159 142 117 83 55 53 48 38 22 19 18 17 17 14 12 10 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCATATGCAGATGTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TGCTAGATTTAAGTCGAAACTTG</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>GGCATATGCAGATGTTGTTTTTTAATTTTGAATATAATATTCCAGAAGTTTTTTCTTGTCAAGTTCTACATTTTCGCTTTAAAATTAATTAGAAATTAAAGTTTTGAGCCGAGTTACGGGTCGGACAATGAACGTCCAGGTTGGCTTATCACCCTCGTCGGTGCATAAATCGGCTCAAAATAGAAACTTTTGATTGAATCAAAAAAAGAGATGGTGGAACTCAATGAGATCTATACTCACCTACTAATCCAACGCATGTTAAGGTTGGATGGCTCGTCAATATATCATATATCATTTGAGGAGTCGCCAAGTTTCGACTTAAATCTAGCA</canonical_amplicon>
		<polymorphic_amplicon>GGCATATGCAGATGTTGTTTTTTAATTTTGAATATAATATTCCAGAAGTTTTTTCTTGTCAAGTTCTACATTTTCGCTTTAAAATTAATTAGAAATTAAAGTTTTGAGCCGAGTTACGGGTCGGACAATGAACGTCCAGGTTGGCTTATCACCCTCGTCGGTGCATAAATCGGCTCAAAATAGAAACTTTTGATTGAATCAAAAAAAGAGATGGTGGAACTCAATGAGATCTATACTCASCTACTAATCCAACGCATGTTAAGGTTGGATGGCTCGTCAATATATCATATATCATTTGAGGAGTCGCCAAGTTTCGACTTAAATCTAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35115</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>267006</contig_pos>
        <strand>+</strand>
        <context>ctataCTCAS[C/T]TACTAATCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGATTGAATCAAAAAAAGAGATGGTGGAACTCAATGAGATCTATACTCAC</left_flank>
        <right_flank>TACTAATCCAACGCATGTTAAGGTTGGATGGCTCGTCAATATATCATATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCAATATTCCGAAAATTCCAAAAATCTAAAAAGGTTAGAGTTTGCATTTTCAGAATTTTGGTTTTTCGATGGTTCTGATTTTCGAGGTTCCAAAACTCTAATCATTAAAACTGGAGTTCTTTTTTCGCATTTCAAATATCATGTAAGCTCTAAAACACTGTTTTTTCGGAACTCCGAAAATATAAAAACAAAAAAAATTCTGAAAAAACTGACCTGTAAACATACAAAAGACAACGAACACATTGTGTCTCAAAATAGGGCATATGCAGATGTTGTTTTTTAATTTTGAATATAATATTCCAGAAGTTTTTTCTTGTCAAGTTCTACATTTTCGCTTTAAAATTAATTAGAAATTAAAGTTTTGAGCCGAGTTACGGGTCGGACAATGAACGTCCAGGTTGGCTTATCACCCTCGTCGGTGCATAAATCGGCTCAAAATAGAAACTTTTGATTGAATCAAAAAAAGAGATGGTGGAACTCAATGAGATCTATACTCACCTACTAATCCAACGCATGTTAAGGTTGGATGGCTCGTCAATATATCATATATCATTTGAGGAGTCGCCAAGTTTCGACTTAAATCTAGCATTTGAAGGTTCGGCAAGACTTTTCTGCACTTCCAGAAATGCTCCACATTTTTCAAATTGTATTTTCTGAAAAAAGATTACATAGTTTATATAAAACGACACCTGGTAAGTTTCAAGGTGAGCTAACTTTTGTCGTGAATGTTCTAACGCACTCTGAGTTCAATAATCTTAGCTCTTTTGAGATTTTTGCATAATATCACTAATATTTTGACAGTTTACGAACGTTTGATATGCTATGTTTAAGCCGAGATAATTGAGCTCAAAAAGCAGCAACGCGCGAAACGCGCCATGCTACAAGAAAAGCGCAAACGACTCACCGATCACCAGAAATGTCCAAAACACGAAGGTTCTTCAAATCAAACACGTCTTCAATATCTTCCTAACTGGCTAGCTCCAAATCACAAGCCATCAA</canonical>
            <polymorphic>GGCAATATTCCGAAAATTCCAAAAATCTAAAAAGGTTAGAGTTTGCATTTTCAGAATTTTGGTTTTTCGATGGTTCTGATTTTCGAGGTTCCAAAACTCTAATCATTAAAACTGGAGTTCTTTTTTCGCATTTCAAATATCATGTAAGCTCTAAAACACTGTTTTTTCGGAACTCCGAAAATATAAAAACAAAAAAAATTCTGAAAAAACTGACCTGTAAACATACAAAAGACAACGAACACATTGTGTCTCAAAATAGGGCATATGCAGATGTTGTTTTTTAATTTTGAATATAATATTCCAGAAGTTTTTTCTTGTCAAGTTCTACATTTTCGCTTTAAAATTAATTAGAAATTAAAGTTTTGAGCCGAGTTACGGGTCGGACAATGAACGTCCAGGTTGGCTTATCACCCTCGTCGGTGCATAAATCGGCTCAAAATAGAAACTTTTGATTGAATCAAAAAAAGAGATGGTGGAACTCAATGAGATCTATACTCACYTACTAATCCAACGCATGTTAAGGTTGGATGGCTCGTCAATATATCATATATCATTTGAGGAGTCGCCAAGTTTCGACTTAAATCTAGCATTTGAAGGTTCGGCAAGACTTTTCTGCACTTCCAGAAATGCTCCACATTTTTCAAATTGTATTTTCTGAAAAAAGATTACATAGTTTATATAAAACGACACCTGGTAAGTTTCAAGGTGAGCTAACTTTTGTCGTGAATGTTCTAACGCACTCTGAGTTCAATAATCTTAGCTCTTTTGAGATTTTTGCATAATATCACTAATATTTTGACAGTTTACGAACGTTTGATATGCTATGTTTAAGCCGAGATAATTGAGCTCAAAAAGCAGCAACGCGCGAAACGCGCCATGCTACAAGAAAAGCGCAAACGACTCACCGATCACCAGAAATGTCCAAAACACGAAGGTTCTTCAAATCAAACACGTCTTCAATATCTTCCTAACTGGCTAGCTCCAAATCACAAGCCATCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCATATGCAGATGTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TGCTAGATTTAAGTCGAAACTTG</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>GGCATATGCAGATGTTGTTTTTTAATTTTGAATATAATATTCCAGAAGTTTTTTCTTGTCAAGTTCTACATTTTCGCTTTAAAATTAATTAGAAATTAAAGTTTTGAGCCGAGTTACGGGTCGGACAATGAACGTCCAGGTTGGCTTATCACCCTCGTCGGTGCATAAATCGGCTCAAAATAGAAACTTTTGATTGAATCAAAAAAAGAGATGGTGGAACTCAATGAGATCTATACTCACCTACTAATCCAACGCATGTTAAGGTTGGATGGCTCGTCAATATATCATATATCATTTGAGGAGTCGCCAAGTTTCGACTTAAATCTAGCA</canonical_amplicon>
		<polymorphic_amplicon>GGCATATGCAGATGTTGTTTTTTAATTTTGAATATAATATTCCAGAAGTTTTTTCTTGTCAAGTTCTACATTTTCGCTTTAAAATTAATTAGAAATTAAAGTTTTGAGCCGAGTTACGGGTCGGACAATGAACGTCCAGGTTGGCTTATCACCCTCGTCGGTGCATAAATCGGCTCAAAATAGAAACTTTTGATTGAATCAAAAAAAGAGATGGTGGAACTCAATGAGATCTATACTCACYTACTAATCCAACGCATGTTAAGGTTGGATGGCTCGTCAATATATCATATATCATTTGAGGAGTCGCCAAGTTTCGACTTAAATCTAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35116</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>276205</contig_pos>
        <strand></strand>
        <context>GAATGCAGAT[C/T]TCATAGAGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGAGGCCGGCGGCGATGACACAGAGGATGATGATGGTTGGAATGCAGAT</left_flank>
        <right_flank>TCATAGAGGAAGTACTTGATGGTGTGGTCCATTGTTTGGGTTGGCTTGGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCATCACATTGTCACCAATATTTTATCAGTTAAAAAATTTTTGATATCTCTTATGGGTACCGAGATACCTGCGGTTAAAGATCGTACTGGCTCTTATACGTGCAGCTCAATTATCTTGGTCCCTGTGAAATATATCAAAAAGCGATCAACTAATGAAATGTTTATCACATTATCACCAATACTTTATCAATTGACAAAATTTTTATATCTCTGATAGGAACCGAGATAACCCAGAAACCAAAAAAATATTCCCAACTCACCTCCAACGTCAACGGAAAACAAAAGCTCTGATGAGGAATCTGCAGGACCACCGGTTTGTAACTATTCCAGAACAACGACACTCCGATCACAATGCTGGTCCATGTATCCGACAAGGCGAGAGAGTAGGTCAACTCGAGAGACGCAGACTTCATCTTACAGTAACCCCGCGAAATGAACACCATGATGTTGAGGCCGGCGGCGATGACACAGAGGATGATGATGGTTGGAATGCAGATCTCATAGAGGAAGTACTTGATGGTGTGGTCCATTGTTTGGGTTGGCTTGGGCTTGGCTTGGGCTAGGGACTGTTGAGGAGGATTCTGGAAATTTCAGATAAATTAGAAAAAAACATTTTTTTGGAGAAAATGAAGAAGTCAGAAAGGCTCTGAAGAGTCAAAAATGATAAAAAAATGTCCGGAAAAAAAGTACGGAAAAAGGACCAAAGATAAGGAATCACATCAAGAAACATTCTTATAAAAAACCAAGAAATTGTTTTCCTGTTGACGTAAATCCCGAATAATATGAATGGGATCATAATGAGAAGAAGAAACTAGAAACTACGATAGGCTGATTTTAGATGTTTTATGAGAGAAAAAAAAACATTTTTTGGGAAGTAGTAGTTTTTAGAGATTCTGAGTCATAGGGAATCAACAATCAGGGGAAATTATAGCAAAAAAAAAATCAAAATTGGCTGAAACTTCTGAAAATTTTTTAAACGAAATTAGCATAATTGAAAG</canonical>
            <polymorphic>GTTCATCACATTGTCACCAATATTTTATCAGTTAAAAAATTTTTGATATCTCTTATGGGTACCGAGATACCTGCGGTTAAAGATCGTACTGGCTCTTATACGTGCAGCTCAATTATCTTGGTCCCTGTGAAATATATCAAAAAGCGATCAACTAATGAAATGTTTATCACATTATCACCAATACTTTATCAATTGACAAAATTTTTATATCTCTGATAGGAACCGAGATAACCCAGAAACCAAAAAAATATTCCCAACTCACCTCCAACGTCAACGGAAAACAAAAGCTCTGATGAGGAATCTGCAGGACCACCGGTTTGTAACTATTCCAGAACAACGACACTCCGATCACAATGCTGGTCCATGTATCCGACAAGGCGAGAGAGTAGGTCAACTCGAGAGACGCAGACTTCATCTTACAGTAACCCCGCGAAATGAACACCATGATGTTGAGGCCGGCGGCGATGACACAGAGGATGATGATGGTTGGAATGCAGATYTCATAGAGGAAGTACTTGATGGTGTGGTCCATTGTTTGGGTTGGCTTGGGCTTGGCTTGGGCTAGGGACTGTTGAGGAGGATTCTGGAAATTTCAGATAAATTAGAAAAAAACATTTTTTTGGAGAAAATGAAGAAGTCAGAAAGGCTCTGAAGAGTCAAAAATGATAAAAAAATGTCCGGAAAAAAAGTACGGAAAAAGGACCAAAGATAAGGAATCACATCAAGAAACATTCTTATAAAAAACCAAGAAATTGTTTTCCTGTTGACGTAAATCCCGAATAATATGAATGGGATCATAATGAGAAGAAGAAACTAGAAACTACGATAGGCTGATTTTAGATGTTTTATGAGAGAAAAAAAAACATTTTTTGGGAAGTAGTAGTTTTTAGAGATTCTGAGTCATAGGGAATCAACAATCAGGGGAAATTATAGCAAAAAAAAAATCAAAATTGGCTGAAACTTCTGAAAATTTTTTAAACGAAATTAGCATAATTGAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>296 208 201 150 81 64</canonical_bands>
                <polymorphic_bands>446 208 201 81 64</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTCCAGAACAACGACACTC</pcr_primer_p1>
		<pcr_primer_p2>AGAATCCTCCTCAACAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>TATTCCAGAACAACGACACTCCGATCACAATGCTGGTCCATGTATCCGACAAGGCGAGAGAGTAGGTCAACTCGAGAGACGCAGACTTCATCTTACAGTAACCCCGCGAAATGAACACCATGATGTTGAGGCCGGCGGCGATGACACAGAGGATGATGATGGTTGGAATGCAGATCTCATAGAGGAAGTACTTGATGGTGTGGTCCATTGTTTGGGTTGGCTTGGGCTTGGCTTGGGCTAGGGACTGTTGAGGAGGATTCT</canonical_amplicon>
		<polymorphic_amplicon>TATTCCAGAACAACGACACTCCGATCACAATGCTGGTCCATGTATCCGACAAGGCGAGAGAGTAGGTCAACTCGAGAGACGCAGACTTCATCTTACAGTAACCCCGCGAAATGAACACCATGATGTTGAGGCCGGCGGCGATGACACAGAGGATGATGATGGTTGGAATGCAGATYTCATAGAGGAAGTACTTGATGGTGTGGTCCATTGTTTGGGTTGGCTTGGGCTTGGCTTGGGCTAGGGACTGTTGAGGAGGATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35117</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>276327</contig_pos>
        <strand></strand>
        <context>ACATTTTTTT[G/T]SAGAAAATGR</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGAGGAGGATTCTGGAAATTTCAGATAAATTAGAAAAAAACATTTTTTT</left_flank>
        <right_flank>GAGAAAATGAAGAAGTCAGAAAGGCTCTGAAGAGTCAAAAATGATAAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCTGTGAAATATATCAAAAAGCGATCAACTAATGAAATGTTTATCACATTATCACCAATACTTTATCAATTGACAAAATTTTTATATCTCTGATAGGAACCGAGATAACCCAGAAACCAAAAAAATATTCCCAACTCACCTCCAACGTCAACGGAAAACAAAAGCTCTGATGAGGAATCTGCAGGACCACCGGTTTGTAACTATTCCAGAACAACGACACTCCGATCACAATGCTGGTCCATGTATCCGACAAGGCGAGAGAGTAGGTCAACTCGAGAGACGCAGACTTCATCTTACAGTAACCCCGCGAAATGAACACCATGATGTTGAGGCCGGCGGCGATGACACAGAGGATGATGATGGTTGGAATGCAGATCTCATAGAGGAAGTACTTGATGGTGTGGTCCATTGTTTGGGTTGGCTTGGGCTTGGCTTGGGCTAGGGACTGTTGAGGAGGATTCTGGAAATTTCAGATAAATTAGAAAAAAACATTTTTTTGGAGAAAATGAAGAAGTCAGAAAGGCTCTGAAGAGTCAAAAATGATAAAAAAATGTCCGGAAAAAAAGTACGGAAAAAGGACCAAAGATAAGGAATCACATCAAGAAACATTCTTATAAAAAACCAAGAAATTGTTTTCCTGTTGACGTAAATCCCGAATAATATGAATGGGATCATAATGAGAAGAAGAAACTAGAAACTACGATAGGCTGATTTTAGATGTTTTATGAGAGAAAAAAAAACATTTTTTGGGAAGTAGTAGTTTTTAGAGATTCTGAGTCATAGGGAATCAACAATCAGGGGAAATTATAGCAAAAAAAAAATCAAAATTGGCTGAAACTTCTGAAAATTTTTTAAACGAAATTAGCATAATTGAAAGGCACAAAACGGGTCTTACCGTAGTTTCTTTTAGAATCGAAATTTGTGGACTATGTAAGTTTTGTATTAAATAGTATAAATAGAGCTCCATTTTTGTAGTTAACAACTTTTTCGTAGTTTTTC</canonical>
            <polymorphic>CCCTGTGAAATATATCAAAAAGCGATCAACTAATGAAATGTTTATCACATTATCACCAATACTTTATCAATTGACAAAATTTTTATATCTCTGATAGGAACCGAGATAACCCAGAAACCAAAAAAATATTCCCAACTCACCTCCAACGTCAACGGAAAACAAAAGCTCTGATGAGGAATCTGCAGGACCACCGGTTTGTAACTATTCCAGAACAACGACACTCCGATCACAATGCTGGTCCATGTATCCGACAAGGCGAGAGAGTAGGTCAACTCGAGAGACGCAGACTTCATCTTACAGTAACCCCGCGAAATGAACACCATGATGTTGAGGCCGGCGGCGATGACACAGAGGATGATGATGGTTGGAATGCAGATCTCATAGAGGAAGTACTTGATGGTGTGGTCCATTGTTTGGGTTGGCTTGGGCTTGGCTTGGGCTAGGGACTGTTGAGGAGGATTCTGGAAATTTCAGATAAATTAGAAAAAAACATTTTTTTKGAGAAAATGAAGAAGTCAGAAAGGCTCTGAAGAGTCAAAAATGATAAAAAAATGTCCGGAAAAAAAGTACGGAAAAAGGACCAAAGATAAGGAATCACATCAAGAAACATTCTTATAAAAAACCAAGAAATTGTTTTCCTGTTGACGTAAATCCCGAATAATATGAATGGGATCATAATGAGAAGAAGAAACTAGAAACTACGATAGGCTGATTTTAGATGTTTTATGAGAGAAAAAAAAACATTTTTTGGGAAGTAGTAGTTTTTAGAGATTCTGAGTCATAGGGAATCAACAATCAGGGGAAATTATAGCAAAAAAAAAATCAAAATTGGCTGAAACTTCTGAAAATTTTTTAAACGAAATTAGCATAATTGAAAGGCACAAAACGGGTCTTACCGTAGTTTCTTTTAGAATCGAAATTTGTGGACTATGTAAGTTTTGTATTAAATAGTATAAATAGAGCTCCATTTTTGTAGTTAACAACTTTTTCGTAGTTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACAGAGGATGATGATGGT</pcr_primer_p1>
		<pcr_primer_p2>ATTCCTTATCTTTGGTCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACACAGAGGATGATGATGGTTGGAATGCAGATCTCATAGAGGAAGTACTTGATGGTGTGGTCCATTGTTTGGGTTGGCTTGGGCTTGGCTTGGGCTAGGGACTGTTGAGGAGGATTCTGGAAATTTCAGATAAATTAGAAAAAAACATTTTTTTGGAGAAAATGAAGAAGTCAGAAAGGCTCTGAAGAGTCAAAAATGATAAAAAAATGTCCGGAAAAAAAGTACGGAAAAAGGACCAAAGATAAGGAAT</canonical_amplicon>
		<polymorphic_amplicon>ACACAGAGGATGATGATGGTTGGAATGCAGATCTCATAGAGGAAGTACTTGATGGTGTGGTCCATTGTTTGGGTTGGCTTGGGCTTGGCTTGGGCTAGGGACTGTTGAGGAGGATTCTGGAAATTTCAGATAAATTAGAAAAAAACATTTTTTTKGAGAAAATGAAGAAGTCAGAAAGGCTCTGAAGAGTCAAAAATGATAAAAAAATGTCCGGAAAAAAAGTACGGAAAAAGGACCAAAGATAAGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35118</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>276328</contig_pos>
        <strand></strand>
        <context>CATTTTTTTK[G/C]AGAAAATGRA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TGAGGAGGATTCTGGAAATTTCAGATAAATTAGAAAAAAACATTTTTTTG</left_flank>
        <right_flank>AGAAAATGAAGAAGTCAGAAAGGCTCTGAAGAGTCAAAAATGATAAAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGTGAAATATATCAAAAAGCGATCAACTAATGAAATGTTTATCACATTATCACCAATACTTTATCAATTGACAAAATTTTTATATCTCTGATAGGAACCGAGATAACCCAGAAACCAAAAAAATATTCCCAACTCACCTCCAACGTCAACGGAAAACAAAAGCTCTGATGAGGAATCTGCAGGACCACCGGTTTGTAACTATTCCAGAACAACGACACTCCGATCACAATGCTGGTCCATGTATCCGACAAGGCGAGAGAGTAGGTCAACTCGAGAGACGCAGACTTCATCTTACAGTAACCCCGCGAAATGAACACCATGATGTTGAGGCCGGCGGCGATGACACAGAGGATGATGATGGTTGGAATGCAGATCTCATAGAGGAAGTACTTGATGGTGTGGTCCATTGTTTGGGTTGGCTTGGGCTTGGCTTGGGCTAGGGACTGTTGAGGAGGATTCTGGAAATTTCAGATAAATTAGAAAAAAACATTTTTTTGGAGAAAATGAAGAAGTCAGAAAGGCTCTGAAGAGTCAAAAATGATAAAAAAATGTCCGGAAAAAAAGTACGGAAAAAGGACCAAAGATAAGGAATCACATCAAGAAACATTCTTATAAAAAACCAAGAAATTGTTTTCCTGTTGACGTAAATCCCGAATAATATGAATGGGATCATAATGAGAAGAAGAAACTAGAAACTACGATAGGCTGATTTTAGATGTTTTATGAGAGAAAAAAAAACATTTTTTGGGAAGTAGTAGTTTTTAGAGATTCTGAGTCATAGGGAATCAACAATCAGGGGAAATTATAGCAAAAAAAAAATCAAAATTGGCTGAAACTTCTGAAAATTTTTTAAACGAAATTAGCATAATTGAAAGGCACAAAACGGGTCTTACCGTAGTTTCTTTTAGAATCGAAATTTGTGGACTATGTAAGTTTTGTATTAAATAGTATAAATAGAGCTCCATTTTTGTAGTTAACAACTTTTTCGTAGTTTTTCT</canonical>
            <polymorphic>CCTGTGAAATATATCAAAAAGCGATCAACTAATGAAATGTTTATCACATTATCACCAATACTTTATCAATTGACAAAATTTTTATATCTCTGATAGGAACCGAGATAACCCAGAAACCAAAAAAATATTCCCAACTCACCTCCAACGTCAACGGAAAACAAAAGCTCTGATGAGGAATCTGCAGGACCACCGGTTTGTAACTATTCCAGAACAACGACACTCCGATCACAATGCTGGTCCATGTATCCGACAAGGCGAGAGAGTAGGTCAACTCGAGAGACGCAGACTTCATCTTACAGTAACCCCGCGAAATGAACACCATGATGTTGAGGCCGGCGGCGATGACACAGAGGATGATGATGGTTGGAATGCAGATCTCATAGAGGAAGTACTTGATGGTGTGGTCCATTGTTTGGGTTGGCTTGGGCTTGGCTTGGGCTAGGGACTGTTGAGGAGGATTCTGGAAATTTCAGATAAATTAGAAAAAAACATTTTTTTGSAGAAAATGAAGAAGTCAGAAAGGCTCTGAAGAGTCAAAAATGATAAAAAAATGTCCGGAAAAAAAGTACGGAAAAAGGACCAAAGATAAGGAATCACATCAAGAAACATTCTTATAAAAAACCAAGAAATTGTTTTCCTGTTGACGTAAATCCCGAATAATATGAATGGGATCATAATGAGAAGAAGAAACTAGAAACTACGATAGGCTGATTTTAGATGTTTTATGAGAGAAAAAAAAACATTTTTTGGGAAGTAGTAGTTTTTAGAGATTCTGAGTCATAGGGAATCAACAATCAGGGGAAATTATAGCAAAAAAAAAATCAAAATTGGCTGAAACTTCTGAAAATTTTTTAAACGAAATTAGCATAATTGAAAGGCACAAAACGGGTCTTACCGTAGTTTCTTTTAGAATCGAAATTTGTGGACTATGTAAGTTTTGTATTAAATAGTATAAATAGAGCTCCATTTTTGTAGTTAACAACTTTTTCGTAGTTTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACAGAGGATGATGATGGT</pcr_primer_p1>
		<pcr_primer_p2>ATTCCTTATCTTTGGTCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACACAGAGGATGATGATGGTTGGAATGCAGATCTCATAGAGGAAGTACTTGATGGTGTGGTCCATTGTTTGGGTTGGCTTGGGCTTGGCTTGGGCTAGGGACTGTTGAGGAGGATTCTGGAAATTTCAGATAAATTAGAAAAAAACATTTTTTTGGAGAAAATGAAGAAGTCAGAAAGGCTCTGAAGAGTCAAAAATGATAAAAAAATGTCCGGAAAAAAAGTACGGAAAAAGGACCAAAGATAAGGAAT</canonical_amplicon>
		<polymorphic_amplicon>ACACAGAGGATGATGATGGTTGGAATGCAGATCTCATAGAGGAAGTACTTGATGGTGTGGTCCATTGTTTGGGTTGGCTTGGGCTTGGCTTGGGCTAGGGACTGTTGAGGAGGATTCTGGAAATTTCAGATAAATTAGAAAAAAACATTTTTTTGSAGAAAATGAAGAAGTCAGAAAGGCTCTGAAGAGTCAAAAATGATAAAAAAATGTCCGGAAAAAAAGTACGGAAAAAGGACCAAAGATAAGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35119</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>276337</contig_pos>
        <strand></strand>
        <context>KSAGAAAATG[A/G]AGAAGYCAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTGGAAATTTCAGATAAATTAGAAAAAAACATTTTTTTGGAGAAAATG</left_flank>
        <right_flank>AGAAGTCAGAAAGGCTCTGAAGAGTCAAAAATGATAAAAAAATGTCCGGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATATCAAAAAGCGATCAACTAATGAAATGTTTATCACATTATCACCAATACTTTATCAATTGACAAAATTTTTATATCTCTGATAGGAACCGAGATAACCCAGAAACCAAAAAAATATTCCCAACTCACCTCCAACGTCAACGGAAAACAAAAGCTCTGATGAGGAATCTGCAGGACCACCGGTTTGTAACTATTCCAGAACAACGACACTCCGATCACAATGCTGGTCCATGTATCCGACAAGGCGAGAGAGTAGGTCAACTCGAGAGACGCAGACTTCATCTTACAGTAACCCCGCGAAATGAACACCATGATGTTGAGGCCGGCGGCGATGACACAGAGGATGATGATGGTTGGAATGCAGATCTCATAGAGGAAGTACTTGATGGTGTGGTCCATTGTTTGGGTTGGCTTGGGCTTGGCTTGGGCTAGGGACTGTTGAGGAGGATTCTGGAAATTTCAGATAAATTAGAAAAAAACATTTTTTTGGAGAAAATGAAGAAGTCAGAAAGGCTCTGAAGAGTCAAAAATGATAAAAAAATGTCCGGAAAAAAAGTACGGAAAAAGGACCAAAGATAAGGAATCACATCAAGAAACATTCTTATAAAAAACCAAGAAATTGTTTTCCTGTTGACGTAAATCCCGAATAATATGAATGGGATCATAATGAGAAGAAGAAACTAGAAACTACGATAGGCTGATTTTAGATGTTTTATGAGAGAAAAAAAAACATTTTTTGGGAAGTAGTAGTTTTTAGAGATTCTGAGTCATAGGGAATCAACAATCAGGGGAAATTATAGCAAAAAAAAAATCAAAATTGGCTGAAACTTCTGAAAATTTTTTAAACGAAATTAGCATAATTGAAAGGCACAAAACGGGTCTTACCGTAGTTTCTTTTAGAATCGAAATTTGTGGACTATGTAAGTTTTGTATTAAATAGTATAAATAGAGCTCCATTTTTGTAGTTAACAACTTTTTCGTAGTTTTTCTAGTTTTTGA</canonical>
            <polymorphic>TATATCAAAAAGCGATCAACTAATGAAATGTTTATCACATTATCACCAATACTTTATCAATTGACAAAATTTTTATATCTCTGATAGGAACCGAGATAACCCAGAAACCAAAAAAATATTCCCAACTCACCTCCAACGTCAACGGAAAACAAAAGCTCTGATGAGGAATCTGCAGGACCACCGGTTTGTAACTATTCCAGAACAACGACACTCCGATCACAATGCTGGTCCATGTATCCGACAAGGCGAGAGAGTAGGTCAACTCGAGAGACGCAGACTTCATCTTACAGTAACCCCGCGAAATGAACACCATGATGTTGAGGCCGGCGGCGATGACACAGAGGATGATGATGGTTGGAATGCAGATCTCATAGAGGAAGTACTTGATGGTGTGGTCCATTGTTTGGGTTGGCTTGGGCTTGGCTTGGGCTAGGGACTGTTGAGGAGGATTCTGGAAATTTCAGATAAATTAGAAAAAAACATTTTTTTGGAGAAAATGRAGAAGTCAGAAAGGCTCTGAAGAGTCAAAAATGATAAAAAAATGTCCGGAAAAAAAGTACGGAAAAAGGACCAAAGATAAGGAATCACATCAAGAAACATTCTTATAAAAAACCAAGAAATTGTTTTCCTGTTGACGTAAATCCCGAATAATATGAATGGGATCATAATGAGAAGAAGAAACTAGAAACTACGATAGGCTGATTTTAGATGTTTTATGAGAGAAAAAAAAACATTTTTTGGGAAGTAGTAGTTTTTAGAGATTCTGAGTCATAGGGAATCAACAATCAGGGGAAATTATAGCAAAAAAAAAATCAAAATTGGCTGAAACTTCTGAAAATTTTTTAAACGAAATTAGCATAATTGAAAGGCACAAAACGGGTCTTACCGTAGTTTCTTTTAGAATCGAAATTTGTGGACTATGTAAGTTTTGTATTAAATAGTATAAATAGAGCTCCATTTTTGTAGTTAACAACTTTTTCGTAGTTTTTCTAGTTTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACAGAGGATGATGATGGT</pcr_primer_p1>
		<pcr_primer_p2>ATTCCTTATCTTTGGTCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACACAGAGGATGATGATGGTTGGAATGCAGATCTCATAGAGGAAGTACTTGATGGTGTGGTCCATTGTTTGGGTTGGCTTGGGCTTGGCTTGGGCTAGGGACTGTTGAGGAGGATTCTGGAAATTTCAGATAAATTAGAAAAAAACATTTTTTTGGAGAAAATGAAGAAGTCAGAAAGGCTCTGAAGAGTCAAAAATGATAAAAAAATGTCCGGAAAAAAAGTACGGAAAAAGGACCAAAGATAAGGAAT</canonical_amplicon>
		<polymorphic_amplicon>ACACAGAGGATGATGATGGTTGGAATGCAGATCTCATAGAGGAAGTACTTGATGGTGTGGTCCATTGTTTGGGTTGGCTTGGGCTTGGCTTGGGCTAGGGACTGTTGAGGAGGATTCTGGAAATTTCAGATAAATTAGAAAAAAACATTTTTTTGGAGAAAATGRAGAAGTCAGAAAGGCTCTGAAGAGTCAAAAATGATAAAAAAATGTCCGGAAAAAAAGTACGGAAAAAGGACCAAAGATAAGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35120</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>276343</contig_pos>
        <strand></strand>
        <context>AATGRAGAAG[T/C]CAGAAAGGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAATTTCAGATAAATTAGAAAAAAACATTTTTTTGGAGAAAATGAAGAAG</left_flank>
        <right_flank>CAGAAAGGCTCTGAAGAGTCAAAAATGATAAAAAAATGTCCGGAAAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAGCGATCAACTAATGAAATGTTTATCACATTATCACCAATACTTTATCAATTGACAAAATTTTTATATCTCTGATAGGAACCGAGATAACCCAGAAACCAAAAAAATATTCCCAACTCACCTCCAACGTCAACGGAAAACAAAAGCTCTGATGAGGAATCTGCAGGACCACCGGTTTGTAACTATTCCAGAACAACGACACTCCGATCACAATGCTGGTCCATGTATCCGACAAGGCGAGAGAGTAGGTCAACTCGAGAGACGCAGACTTCATCTTACAGTAACCCCGCGAAATGAACACCATGATGTTGAGGCCGGCGGCGATGACACAGAGGATGATGATGGTTGGAATGCAGATCTCATAGAGGAAGTACTTGATGGTGTGGTCCATTGTTTGGGTTGGCTTGGGCTTGGCTTGGGCTAGGGACTGTTGAGGAGGATTCTGGAAATTTCAGATAAATTAGAAAAAAACATTTTTTTGGAGAAAATGAAGAAGTCAGAAAGGCTCTGAAGAGTCAAAAATGATAAAAAAATGTCCGGAAAAAAAGTACGGAAAAAGGACCAAAGATAAGGAATCACATCAAGAAACATTCTTATAAAAAACCAAGAAATTGTTTTCCTGTTGACGTAAATCCCGAATAATATGAATGGGATCATAATGAGAAGAAGAAACTAGAAACTACGATAGGCTGATTTTAGATGTTTTATGAGAGAAAAAAAAACATTTTTTGGGAAGTAGTAGTTTTTAGAGATTCTGAGTCATAGGGAATCAACAATCAGGGGAAATTATAGCAAAAAAAAAATCAAAATTGGCTGAAACTTCTGAAAATTTTTTAAACGAAATTAGCATAATTGAAAGGCACAAAACGGGTCTTACCGTAGTTTCTTTTAGAATCGAAATTTGTGGACTATGTAAGTTTTGTATTAAATAGTATAAATAGAGCTCCATTTTTGTAGTTAACAACTTTTTCGTAGTTTTTCTAGTTTTTGAGATATG</canonical>
            <polymorphic>AAAAAGCGATCAACTAATGAAATGTTTATCACATTATCACCAATACTTTATCAATTGACAAAATTTTTATATCTCTGATAGGAACCGAGATAACCCAGAAACCAAAAAAATATTCCCAACTCACCTCCAACGTCAACGGAAAACAAAAGCTCTGATGAGGAATCTGCAGGACCACCGGTTTGTAACTATTCCAGAACAACGACACTCCGATCACAATGCTGGTCCATGTATCCGACAAGGCGAGAGAGTAGGTCAACTCGAGAGACGCAGACTTCATCTTACAGTAACCCCGCGAAATGAACACCATGATGTTGAGGCCGGCGGCGATGACACAGAGGATGATGATGGTTGGAATGCAGATCTCATAGAGGAAGTACTTGATGGTGTGGTCCATTGTTTGGGTTGGCTTGGGCTTGGCTTGGGCTAGGGACTGTTGAGGAGGATTCTGGAAATTTCAGATAAATTAGAAAAAAACATTTTTTTGGAGAAAATGAAGAAGYCAGAAAGGCTCTGAAGAGTCAAAAATGATAAAAAAATGTCCGGAAAAAAAGTACGGAAAAAGGACCAAAGATAAGGAATCACATCAAGAAACATTCTTATAAAAAACCAAGAAATTGTTTTCCTGTTGACGTAAATCCCGAATAATATGAATGGGATCATAATGAGAAGAAGAAACTAGAAACTACGATAGGCTGATTTTAGATGTTTTATGAGAGAAAAAAAAACATTTTTTGGGAAGTAGTAGTTTTTAGAGATTCTGAGTCATAGGGAATCAACAATCAGGGGAAATTATAGCAAAAAAAAAATCAAAATTGGCTGAAACTTCTGAAAATTTTTTAAACGAAATTAGCATAATTGAAAGGCACAAAACGGGTCTTACCGTAGTTTCTTTTAGAATCGAAATTTGTGGACTATGTAAGTTTTGTATTAAATAGTATAAATAGAGCTCCATTTTTGTAGTTAACAACTTTTTCGTAGTTTTTCTAGTTTTTGAGATATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>247 224 173 77 76 68 55 45 25 10</canonical_bands>
                <polymorphic_bands>247 224 173 77 76 68 55 55 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACACAGAGGATGATGATGGT</pcr_primer_p1>
		<pcr_primer_p2>ATTCCTTATCTTTGGTCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACACAGAGGATGATGATGGTTGGAATGCAGATCTCATAGAGGAAGTACTTGATGGTGTGGTCCATTGTTTGGGTTGGCTTGGGCTTGGCTTGGGCTAGGGACTGTTGAGGAGGATTCTGGAAATTTCAGATAAATTAGAAAAAAACATTTTTTTGGAGAAAATGAAGAAGTCAGAAAGGCTCTGAAGAGTCAAAAATGATAAAAAAATGTCCGGAAAAAAAGTACGGAAAAAGGACCAAAGATAAGGAAT</canonical_amplicon>
		<polymorphic_amplicon>ACACAGAGGATGATGATGGTTGGAATGCAGATCTCATAGAGGAAGTACTTGATGGTGTGGTCCATTGTTTGGGTTGGCTTGGGCTTGGCTTGGGCTAGGGACTGTTGAGGAGGATTCTGGAAATTTCAGATAAATTAGAAAAAAACATTTTTTTGGAGAAAATGAAGAAGYCAGAAAGGCTCTGAAGAGTCAAAAATGATAAAAAAATGTCCGGAAAAAAAGTACGGAAAAAGGACCAAAGATAAGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35121</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>276362</contig_pos>
        <strand></strand>
        <context>CTCTGAAGAG[T/C]CAAAAATGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAAAACATTTTTTTGGAGAAAATGAAGAAGTCAGAAAGGCTCTGAAGAG</left_flank>
        <right_flank>CAAAAATGATAAAAAAATGTCCGGAAAAAAAGTACGGAAAAAGGACCAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATGTTTATCACATTATCACCAATACTTTATCAATTGACAAAATTTTTATATCTCTGATAGGAACCGAGATAACCCAGAAACCAAAAAAATATTCCCAACTCACCTCCAACGTCAACGGAAAACAAAAGCTCTGATGAGGAATCTGCAGGACCACCGGTTTGTAACTATTCCAGAACAACGACACTCCGATCACAATGCTGGTCCATGTATCCGACAAGGCGAGAGAGTAGGTCAACTCGAGAGACGCAGACTTCATCTTACAGTAACCCCGCGAAATGAACACCATGATGTTGAGGCCGGCGGCGATGACACAGAGGATGATGATGGTTGGAATGCAGATCTCATAGAGGAAGTACTTGATGGTGTGGTCCATTGTTTGGGTTGGCTTGGGCTTGGCTTGGGCTAGGGACTGTTGAGGAGGATTCTGGAAATTTCAGATAAATTAGAAAAAAACATTTTTTTGGAGAAAATGAAGAAGTCAGAAAGGCTCTGAAGAGTCAAAAATGATAAAAAAATGTCCGGAAAAAAAGTACGGAAAAAGGACCAAAGATAAGGAATCACATCAAGAAACATTCTTATAAAAAACCAAGAAATTGTTTTCCTGTTGACGTAAATCCCGAATAATATGAATGGGATCATAATGAGAAGAAGAAACTAGAAACTACGATAGGCTGATTTTAGATGTTTTATGAGAGAAAAAAAAACATTTTTTGGGAAGTAGTAGTTTTTAGAGATTCTGAGTCATAGGGAATCAACAATCAGGGGAAATTATAGCAAAAAAAAAATCAAAATTGGCTGAAACTTCTGAAAATTTTTTAAACGAAATTAGCATAATTGAAAGGCACAAAACGGGTCTTACCGTAGTTTCTTTTAGAATCGAAATTTGTGGACTATGTAAGTTTTGTATTAAATAGTATAAATAGAGCTCCATTTTTGTAGTTAACAACTTTTTCGTAGTTTTTCTAGTTTTTGAGATATGTGCCTTTAAAGATACCAAC</canonical>
            <polymorphic>AAATGTTTATCACATTATCACCAATACTTTATCAATTGACAAAATTTTTATATCTCTGATAGGAACCGAGATAACCCAGAAACCAAAAAAATATTCCCAACTCACCTCCAACGTCAACGGAAAACAAAAGCTCTGATGAGGAATCTGCAGGACCACCGGTTTGTAACTATTCCAGAACAACGACACTCCGATCACAATGCTGGTCCATGTATCCGACAAGGCGAGAGAGTAGGTCAACTCGAGAGACGCAGACTTCATCTTACAGTAACCCCGCGAAATGAACACCATGATGTTGAGGCCGGCGGCGATGACACAGAGGATGATGATGGTTGGAATGCAGATCTCATAGAGGAAGTACTTGATGGTGTGGTCCATTGTTTGGGTTGGCTTGGGCTTGGCTTGGGCTAGGGACTGTTGAGGAGGATTCTGGAAATTTCAGATAAATTAGAAAAAAACATTTTTTTGGAGAAAATGAAGAAGTCAGAAAGGCTCTGAAGAGYCAAAAATGATAAAAAAATGTCCGGAAAAAAAGTACGGAAAAAGGACCAAAGATAAGGAATCACATCAAGAAACATTCTTATAAAAAACCAAGAAATTGTTTTCCTGTTGACGTAAATCCCGAATAATATGAATGGGATCATAATGAGAAGAAGAAACTAGAAACTACGATAGGCTGATTTTAGATGTTTTATGAGAGAAAAAAAAACATTTTTTGGGAAGTAGTAGTTTTTAGAGATTCTGAGTCATAGGGAATCAACAATCAGGGGAAATTATAGCAAAAAAAAAATCAAAATTGGCTGAAACTTCTGAAAATTTTTTAAACGAAATTAGCATAATTGAAAGGCACAAAACGGGTCTTACCGTAGTTTCTTTTAGAATCGAAATTTGTGGACTATGTAAGTTTTGTATTAAATAGTATAAATAGAGCTCCATTTTTGTAGTTAACAACTTTTTCGTAGTTTTTCTAGTTTTTGAGATATGTGCCTTTAAAGATACCAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>282 178 141 125 124 74 60 10 6</canonical_bands>
                <polymorphic_bands>282 178 141 134 125 124 10 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACACAGAGGATGATGATGGT</pcr_primer_p1>
		<pcr_primer_p2>ATTCCTTATCTTTGGTCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACACAGAGGATGATGATGGTTGGAATGCAGATCTCATAGAGGAAGTACTTGATGGTGTGGTCCATTGTTTGGGTTGGCTTGGGCTTGGCTTGGGCTAGGGACTGTTGAGGAGGATTCTGGAAATTTCAGATAAATTAGAAAAAAACATTTTTTTGGAGAAAATGAAGAAGTCAGAAAGGCTCTGAAGAGTCAAAAATGATAAAAAAATGTCCGGAAAAAAAGTACGGAAAAAGGACCAAAGATAAGGAAT</canonical_amplicon>
		<polymorphic_amplicon>ACACAGAGGATGATGATGGTTGGAATGCAGATCTCATAGAGGAAGTACTTGATGGTGTGGTCCATTGTTTGGGTTGGCTTGGGCTTGGCTTGGGCTAGGGACTGTTGAGGAGGATTCTGGAAATTTCAGATAAATTAGAAAAAAACATTTTTTTGGAGAAAATGAAGAAGTCAGAAAGGCTCTGAAGAGYCAAAAATGATAAAAAAATGTCCGGAAAAAAAGTACGGAAAAAGGACCAAAGATAAGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35122</snp_id>
        <super_contig>c009701346.Contig1</super_contig>
        <contig_pos>276440</contig_pos>
        <strand></strand>
        <context>AGAAACATTC[T/A]TATAAAAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAAAGTACGGAAAAAGGACCAAAGATAAGGAATCACATCAAGAAACATTC</left_flank>
        <right_flank>TATAAAAAACCAAGAAATTGTTTTCCTGTTGACGTAAATCCCGAATAATA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAACCAAAAAAATATTCCCAACTCACCTCCAACGTCAACGGAAAACAAAAGCTCTGATGAGGAATCTGCAGGACCACCGGTTTGTAACTATTCCAGAACAACGACACTCCGATCACAATGCTGGTCCATGTATCCGACAAGGCGAGAGAGTAGGTCAACTCGAGAGACGCAGACTTCATCTTACAGTAACCCCGCGAAATGAACACCATGATGTTGAGGCCGGCGGCGATGACACAGAGGATGATGATGGTTGGAATGCAGATCTCATAGAGGAAGTACTTGATGGTGTGGTCCATTGTTTGGGTTGGCTTGGGCTTGGCTTGGGCTAGGGACTGTTGAGGAGGATTCTGGAAATTTCAGATAAATTAGAAAAAAACATTTTTTTGGAGAAAATGAAGAAGTCAGAAAGGCTCTGAAGAGTCAAAAATGATAAAAAAATGTCCGGAAAAAAAGTACGGAAAAAGGACCAAAGATAAGGAATCACATCAAGAAACATTCTTATAAAAAACCAAGAAATTGTTTTCCTGTTGACGTAAATCCCGAATAATATGAATGGGATCATAATGAGAAGAAGAAACTAGAAACTACGATAGGCTGATTTTAGATGTTTTATGAGAGAAAAAAAAACATTTTTTGGGAAGTAGTAGTTTTTAGAGATTCTGAGTCATAGGGAATCAACAATCAGGGGAAATTATAGCAAAAAAAAAATCAAAATTGGCTGAAACTTCTGAAAATTTTTTAAACGAAATTAGCATAATTGAAAGGCACAAAACGGGTCTTACCGTAGTTTCTTTTAGAATCGAAATTTGTGGACTATGTAAGTTTTGTATTAAATAGTATAAATAGAGCTCCATTTTTGTAGTTAACAACTTTTTCGTAGTTTTTCTAGTTTTTGAGATATGTGCCTTTAAAGATACCAACTCCTCCCGTCCCCTCACCTGGAGGGGTAGGGAGGGTTGTACTTTTTAAAAGCGTATATCTTGAAAACGAAAATTTTTA</canonical>
            <polymorphic>GAAACCAAAAAAATATTCCCAACTCACCTCCAACGTCAACGGAAAACAAAAGCTCTGATGAGGAATCTGCAGGACCACCGGTTTGTAACTATTCCAGAACAACGACACTCCGATCACAATGCTGGTCCATGTATCCGACAAGGCGAGAGAGTAGGTCAACTCGAGAGACGCAGACTTCATCTTACAGTAACCCCGCGAAATGAACACCATGATGTTGAGGCCGGCGGCGATGACACAGAGGATGATGATGGTTGGAATGCAGATCTCATAGAGGAAGTACTTGATGGTGTGGTCCATTGTTTGGGTTGGCTTGGGCTTGGCTTGGGCTAGGGACTGTTGAGGAGGATTCTGGAAATTTCAGATAAATTAGAAAAAAACATTTTTTTGGAGAAAATGAAGAAGTCAGAAAGGCTCTGAAGAGTCAAAAATGATAAAAAAATGTCCGGAAAAAAAGTACGGAAAAAGGACCAAAGATAAGGAATCACATCAAGAAACATTCWTATAAAAAACCAAGAAATTGTTTTCCTGTTGACGTAAATCCCGAATAATATGAATGGGATCATAATGAGAAGAAGAAACTAGAAACTACGATAGGCTGATTTTAGATGTTTTATGAGAGAAAAAAAAACATTTTTTGGGAAGTAGTAGTTTTTAGAGATTCTGAGTCATAGGGAATCAACAATCAGGGGAAATTATAGCAAAAAAAAAATCAAAATTGGCTGAAACTTCTGAAAATTTTTTAAACGAAATTAGCATAATTGAAAGGCACAAAACGGGTCTTACCGTAGTTTCTTTTAGAATCGAAATTTGTGGACTATGTAAGTTTTGTATTAAATAGTATAAATAGAGCTCCATTTTTGTAGTTAACAACTTTTTCGTAGTTTTTCTAGTTTTTGAGATATGTGCCTTTAAAGATACCAACTCCTCCCGTCCCCTCACCTGGAGGGGTAGGGAGGGTTGTACTTTTTAAAAGCGTATATCTTGAAAACGAAAATTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAATTTCAGATAAATTAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAATCAGCCTATCGTAGTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GGAAATTTCAGATAAATTAGAAAAAAACATTTTTTTGGAGAAAATGAAGAAGTCAGAAAGGCTCTGAAGAGTCAAAAATGATAAAAAAATGTCCGGAAAAAAAGTACGGAAAAAGGACCAAAGATAAGGAATCACATCAAGAAACATTCTTATAAAAAACCAAGAAATTGTTTTCCTGTTGACGTAAATCCCGAATAATATGAATGGGATCATAATGAGAAGAAGAAACTAGAAACTACGATAGGCTGATTTT</canonical_amplicon>
		<polymorphic_amplicon>GGAAATTTCAGATAAATTAGAAAAAAACATTTTTTTGGAGAAAATGAAGAAGTCAGAAAGGCTCTGAAGAGTCAAAAATGATAAAAAAATGTCCGGAAAAAAAGTACGGAAAAAGGACCAAAGATAAGGAATCACATCAAGAAACATTCWTATAAAAAACCAAGAAATTGTTTTCCTGTTGACGTAAATCCCGAATAATATGAATGGGATCATAATGAGAAGAAGAAACTAGAAACTACGATAGGCTGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35123</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>2899</contig_pos>
        <strand></strand>
        <context>AATTATATTC[G/T]CCAAAACTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATCTTGGATTTATCAAAAAGTTCTCAAGAATCAAAAAAAAATTATATTC</left_flank>
        <right_flank>CCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGATACGTGCAATTAGAGCTCAATTATCTCTGTTCTTTCAAAAGATATCAAATTTTTTTTCAACTGATAAACTTTCTATCATTTCATCACCAATATTTAAATAGTTGACAGATTTTTGATATCTCTGATAGGAACCGAGATGATTGAGCTCAAAATGCACGTATATGCTGTGCTTCTATTAGAGAAAATATGGTAAATTTCAAATACCAGTTTAAGGGTTTTTGAAAGTAAAAAAACTGAGACCTTTTTTTTAAGAAGGAGAAGAATACGACAAAATAAGCAAGACCACTAAAAATCACTTCAAAATGTCAATGTCTGGAAAGTTCTAGGAAGAGGTTCTAGAATTTTCGAAGTTTCCAGAGATTGGCCACTTCTAAGAATTTCAATGATTTTGCAGTTCAGCTACCGTACTTTCTGTAACAACCACACATGTGGCTTTGTTGCCAATTATCTTGGATTTATCAAAAAGTTCTCAAGAATCAAAAAAAAATTATATTCGCCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAACGTGTTAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTTTCCAAAATTCTAAAAAAAGGGAGTTCAGAACTAAATATATGAAAATTCGTGTCCGAAACACTGGTGACTATTTCATCAGAACATCGGAACGAAAATCAAAAACTCGTCATCATCATCATCATCATCATCATCATCATCCGACGTGTCGTTTCTATCTCATTTCTTCTCAGGAAGAAGAAAAGTGTGCAATATATGTTACACACACTTTTGCCATACATCCGTA</canonical>
            <polymorphic>CTGATACGTGCAATTAGAGCTCAATTATCTCTGTTCTTTCAAAAGATATCAAATTTTTTTTCAACTGATAAACTTTCTATCATTTCATCACCAATATTTAAATAGTTGACAGATTTTTGATATCTCTGATAGGAACCGAGATGATTGAGCTCAAAATGCACGTATATGCTGTGCTTCTATTAGAGAAAATATGGTAAATTTCAAATACCAGTTTAAGGGTTTTTGAAAGTAAAAAAACTGAGACCTTTTTTTTAAGAAGGAGAAGAATACGACAAAATAAGCAAGACCACTAAAAATCACTTCAAAATGTCAATGTCTGGAAAGTTCTAGGAAGAGGTTCTAGAATTTTCGAAGTTTCCAGAGATTGGCCACTTCTAAGAATTTCAATGATTTTGCAGTTCAGCTACCGTACTTTCTGTAACAACCACACATGTGGCTTTGTTGCCAATTATCTTGGATTTATCAAAAAGTTCTCAAGAATCAAAAAAAAATTATATTCKCCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAACGTGTTAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTTTCCAAAATTCTAAAAAAAGGGAGTTCAGAACTAAATATATGAAAATTCGTGTCCGAAACACTGGTGACTATTTCATCAGAACATCGGAACGAAAATCAAAAACTCGTCATCATCATCATCATCATCATCATCATCATCCGACGTGTCGTTTCTATCTCATTTCTTCTCAGGAAGAAGAAAAGTGTGCAATATATGTTACACACACTTTTGCCATACATCCGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTTTCGAAGTTTCCAGAG</pcr_primer_p1>
		<pcr_primer_p2>ATAATTCAATCACTCCCAACTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATTTTCGAAGTTTCCAGAGATTGGCCACTTCTAAGAATTTCAATGATTTTGCAGTTCAGCTACCGTACTTTCTGTAACAACCACACATGTGGCTTTGTTGCCAATTATCTTGGATTTATCAAAAAGTTCTCAAGAATCAAAAAAAAATTATATTCGCCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAACGTGTTAAGTTGGGAGTGATTGAATTAT</canonical_amplicon>
		<polymorphic_amplicon>GAATTTTCGAAGTTTCCAGAGATTGGCCACTTCTAAGAATTTCAATGATTTTGCAGTTCAGCTACCGTACTTTCTGTAACAACCACACATGTGGCTTTGTTGCCAATTATCTTGGATTTATCAAAAAGTTCTCAAGAATCAAAAAAAAATTATATTCKCCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAACGTGTTAAGTTGGGAGTGATTGAATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35124</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>2964</contig_pos>
        <strand></strand>
        <context>TCAGAGGAAA[C/A]RTGTTAAGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAA</left_flank>
        <right_flank>GTGTTAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATAAACTTTCTATCATTTCATCACCAATATTTAAATAGTTGACAGATTTTTGATATCTCTGATAGGAACCGAGATGATTGAGCTCAAAATGCACGTATATGCTGTGCTTCTATTAGAGAAAATATGGTAAATTTCAAATACCAGTTTAAGGGTTTTTGAAAGTAAAAAAACTGAGACCTTTTTTTTAAGAAGGAGAAGAATACGACAAAATAAGCAAGACCACTAAAAATCACTTCAAAATGTCAATGTCTGGAAAGTTCTAGGAAGAGGTTCTAGAATTTTCGAAGTTTCCAGAGATTGGCCACTTCTAAGAATTTCAATGATTTTGCAGTTCAGCTACCGTACTTTCTGTAACAACCACACATGTGGCTTTGTTGCCAATTATCTTGGATTTATCAAAAAGTTCTCAAGAATCAAAAAAAAATTATATTCGCCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAACGTGTTAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTTTCCAAAATTCTAAAAAAAGGGAGTTCAGAACTAAATATATGAAAATTCGTGTCCGAAACACTGGTGACTATTTCATCAGAACATCGGAACGAAAATCAAAAACTCGTCATCATCATCATCATCATCATCATCATCATCCGACGTGTCGTTTCTATCTCATTTCTTCTCAGGAAGAAGAAAAGTGTGCAATATATGTTACACACACTTTTGCCATACATCCGTATTTCTTGTGCTCTTTCTCTCTCATTTCTGCCATTGAAAATCTTGTCTTCAGAGAGAGCCCTAGTG</canonical>
            <polymorphic>TGATAAACTTTCTATCATTTCATCACCAATATTTAAATAGTTGACAGATTTTTGATATCTCTGATAGGAACCGAGATGATTGAGCTCAAAATGCACGTATATGCTGTGCTTCTATTAGAGAAAATATGGTAAATTTCAAATACCAGTTTAAGGGTTTTTGAAAGTAAAAAAACTGAGACCTTTTTTTTAAGAAGGAGAAGAATACGACAAAATAAGCAAGACCACTAAAAATCACTTCAAAATGTCAATGTCTGGAAAGTTCTAGGAAGAGGTTCTAGAATTTTCGAAGTTTCCAGAGATTGGCCACTTCTAAGAATTTCAATGATTTTGCAGTTCAGCTACCGTACTTTCTGTAACAACCACACATGTGGCTTTGTTGCCAATTATCTTGGATTTATCAAAAAGTTCTCAAGAATCAAAAAAAAATTATATTCGCCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAAMGTGTTAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTTTCCAAAATTCTAAAAAAAGGGAGTTCAGAACTAAATATATGAAAATTCGTGTCCGAAACACTGGTGACTATTTCATCAGAACATCGGAACGAAAATCAAAAACTCGTCATCATCATCATCATCATCATCATCATCATCCGACGTGTCGTTTCTATCTCATTTCTTCTCAGGAAGAAGAAAAGTGTGCAATATATGTTACACACACTTTTGCCATACATCCGTATTTCTTGTGCTCTTTCTCTCTCATTTCTGCCATTGAAAATCTTGTCTTCAGAGAGAGCCCTAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>364 354 147 135</canonical_bands>
                <polymorphic_bands>489 364 147</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>404 354 147 95</canonical_bands>
                <polymorphic_bands>758 147 95</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAAACTTTGACATCTTCTGTA</pcr_primer_p1>
		<pcr_primer_p2>CAATCCAATAGACTGTAGTCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAACGTGTTAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTG</canonical_amplicon>
		<polymorphic_amplicon>CCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAAMGTGTTAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35125</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>2965</contig_pos>
        <strand></strand>
        <context>CAGAGGAAAM[G/A]TGTTAAGTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAAC</left_flank>
        <right_flank>TGTTAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATAAACTTTCTATCATTTCATCACCAATATTTAAATAGTTGACAGATTTTTGATATCTCTGATAGGAACCGAGATGATTGAGCTCAAAATGCACGTATATGCTGTGCTTCTATTAGAGAAAATATGGTAAATTTCAAATACCAGTTTAAGGGTTTTTGAAAGTAAAAAAACTGAGACCTTTTTTTTAAGAAGGAGAAGAATACGACAAAATAAGCAAGACCACTAAAAATCACTTCAAAATGTCAATGTCTGGAAAGTTCTAGGAAGAGGTTCTAGAATTTTCGAAGTTTCCAGAGATTGGCCACTTCTAAGAATTTCAATGATTTTGCAGTTCAGCTACCGTACTTTCTGTAACAACCACACATGTGGCTTTGTTGCCAATTATCTTGGATTTATCAAAAAGTTCTCAAGAATCAAAAAAAAATTATATTCGCCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAACGTGTTAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTTTCCAAAATTCTAAAAAAAGGGAGTTCAGAACTAAATATATGAAAATTCGTGTCCGAAACACTGGTGACTATTTCATCAGAACATCGGAACGAAAATCAAAAACTCGTCATCATCATCATCATCATCATCATCATCATCCGACGTGTCGTTTCTATCTCATTTCTTCTCAGGAAGAAGAAAAGTGTGCAATATATGTTACACACACTTTTGCCATACATCCGTATTTCTTGTGCTCTTTCTCTCTCATTTCTGCCATTGAAAATCTTGTCTTCAGAGAGAGCCCTAGTGT</canonical>
            <polymorphic>GATAAACTTTCTATCATTTCATCACCAATATTTAAATAGTTGACAGATTTTTGATATCTCTGATAGGAACCGAGATGATTGAGCTCAAAATGCACGTATATGCTGTGCTTCTATTAGAGAAAATATGGTAAATTTCAAATACCAGTTTAAGGGTTTTTGAAAGTAAAAAAACTGAGACCTTTTTTTTAAGAAGGAGAAGAATACGACAAAATAAGCAAGACCACTAAAAATCACTTCAAAATGTCAATGTCTGGAAAGTTCTAGGAAGAGGTTCTAGAATTTTCGAAGTTTCCAGAGATTGGCCACTTCTAAGAATTTCAATGATTTTGCAGTTCAGCTACCGTACTTTCTGTAACAACCACACATGTGGCTTTGTTGCCAATTATCTTGGATTTATCAAAAAGTTCTCAAGAATCAAAAAAAAATTATATTCGCCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAACRTGTTAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTTTCCAAAATTCTAAAAAAAGGGAGTTCAGAACTAAATATATGAAAATTCGTGTCCGAAACACTGGTGACTATTTCATCAGAACATCGGAACGAAAATCAAAAACTCGTCATCATCATCATCATCATCATCATCATCATCCGACGTGTCGTTTCTATCTCATTTCTTCTCAGGAAGAAGAAAAGTGTGCAATATATGTTACACACACTTTTGCCATACATCCGTATTTCTTGTGCTCTTTCTCTCTCATTTCTGCCATTGAAAATCTTGTCTTCAGAGAGAGCCCTAGTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>363 354 148 135</canonical_bands>
                <polymorphic_bands>489 363 148</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>137 116 109 95 79 72 70 56 56 39 38 28 24 14 14 13 10 9 6 6 2 2 2 2 1</canonical_bands>
                <polymorphic_bands>137 116 109 95 79 72 70 56 56 52 39 28 24 14 13 10 9 6 6 2 2 2 2 1</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>404 354 148 94</canonical_bands>
                <polymorphic_bands>758 148 94</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAAACTTTGACATCTTCTGTA</pcr_primer_p1>
		<pcr_primer_p2>CAATCCAATAGACTGTAGTCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAACGTGTTAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTG</canonical_amplicon>
		<polymorphic_amplicon>CCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAACRTGTTAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35126</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>2998</contig_pos>
        <strand></strand>
        <context>TTATTGGCTA[C/G]GGTCTATTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGCATTTCAGAGGAAACGTGTTAAGTTGGGAGTGATTGAATTATTGGCTA</left_flank>
        <right_flank>GGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATAGTTGACAGATTTTTGATATCTCTGATAGGAACCGAGATGATTGAGCTCAAAATGCACGTATATGCTGTGCTTCTATTAGAGAAAATATGGTAAATTTCAAATACCAGTTTAAGGGTTTTTGAAAGTAAAAAAACTGAGACCTTTTTTTTAAGAAGGAGAAGAATACGACAAAATAAGCAAGACCACTAAAAATCACTTCAAAATGTCAATGTCTGGAAAGTTCTAGGAAGAGGTTCTAGAATTTTCGAAGTTTCCAGAGATTGGCCACTTCTAAGAATTTCAATGATTTTGCAGTTCAGCTACCGTACTTTCTGTAACAACCACACATGTGGCTTTGTTGCCAATTATCTTGGATTTATCAAAAAGTTCTCAAGAATCAAAAAAAAATTATATTCGCCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAACGTGTTAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTTTCCAAAATTCTAAAAAAAGGGAGTTCAGAACTAAATATATGAAAATTCGTGTCCGAAACACTGGTGACTATTTCATCAGAACATCGGAACGAAAATCAAAAACTCGTCATCATCATCATCATCATCATCATCATCATCCGACGTGTCGTTTCTATCTCATTTCTTCTCAGGAAGAAGAAAAGTGTGCAATATATGTTACACACACTTTTGCCATACATCCGTATTTCTTGTGCTCTTTCTCTCTCATTTCTGCCATTGAAAATCTTGTCTTCAGAGAGAGCCCTAGTGTCTCTTTTTCCTCTTTTTTGTCGTCGTGTTGCCC</canonical>
            <polymorphic>AAATAGTTGACAGATTTTTGATATCTCTGATAGGAACCGAGATGATTGAGCTCAAAATGCACGTATATGCTGTGCTTCTATTAGAGAAAATATGGTAAATTTCAAATACCAGTTTAAGGGTTTTTGAAAGTAAAAAAACTGAGACCTTTTTTTTAAGAAGGAGAAGAATACGACAAAATAAGCAAGACCACTAAAAATCACTTCAAAATGTCAATGTCTGGAAAGTTCTAGGAAGAGGTTCTAGAATTTTCGAAGTTTCCAGAGATTGGCCACTTCTAAGAATTTCAATGATTTTGCAGTTCAGCTACCGTACTTTCTGTAACAACCACACATGTGGCTTTGTTGCCAATTATCTTGGATTTATCAAAAAGTTCTCAAGAATCAAAAAAAAATTATATTCGCCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAACGTGTTAAGTTGGGAGTGATTGAATTATTGGCTASGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTTTCCAAAATTCTAAAAAAAGGGAGTTCAGAACTAAATATATGAAAATTCGTGTCCGAAACACTGGTGACTATTTCATCAGAACATCGGAACGAAAATCAAAAACTCGTCATCATCATCATCATCATCATCATCATCATCCGACGTGTCGTTTCTATCTCATTTCTTCTCAGGAAGAAGAAAAGTGTGCAATATATGTTACACACACTTTTGCCATACATCCGTATTTCTTGTGCTCTTTCTCTCTCATTTCTGCCATTGAAAATCTTGTCTTCAGAGAGAGCCCTAGTGTCTCTTTTTCCTCTTTTTTGTCGTCGTGTTGCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>358 309 192 141</canonical_bands>
                <polymorphic_bands>358 333 309</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAAACTTTGACATCTTCTGTA</pcr_primer_p1>
		<pcr_primer_p2>CAATCCAATAGACTGTAGTCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAACGTGTTAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTG</canonical_amplicon>
		<polymorphic_amplicon>CCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAACGTGTTAAGTTGGGAGTGATTGAATTATTGGCTASGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35127</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>3077</contig_pos>
        <strand></strand>
        <context>tcaaaatttt[T/C]ctatatctct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTT</left_flank>
        <right_flank>CTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAGAGAAAATATGGTAAATTTCAAATACCAGTTTAAGGGTTTTTGAAAGTAAAAAAACTGAGACCTTTTTTTTAAGAAGGAGAAGAATACGACAAAATAAGCAAGACCACTAAAAATCACTTCAAAATGTCAATGTCTGGAAAGTTCTAGGAAGAGGTTCTAGAATTTTCGAAGTTTCCAGAGATTGGCCACTTCTAAGAATTTCAATGATTTTGCAGTTCAGCTACCGTACTTTCTGTAACAACCACACATGTGGCTTTGTTGCCAATTATCTTGGATTTATCAAAAAGTTCTCAAGAATCAAAAAAAAATTATATTCGCCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAACGTGTTAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTTTCCAAAATTCTAAAAAAAGGGAGTTCAGAACTAAATATATGAAAATTCGTGTCCGAAACACTGGTGACTATTTCATCAGAACATCGGAACGAAAATCAAAAACTCGTCATCATCATCATCATCATCATCATCATCATCCGACGTGTCGTTTCTATCTCATTTCTTCTCAGGAAGAAGAAAAGTGTGCAATATATGTTACACACACTTTTGCCATACATCCGTATTTCTTGTGCTCTTTCTCTCTCATTTCTGCCATTGAAAATCTTGTCTTCAGAGAGAGCCCTAGTGTCTCTTTTTCCTCTTTTTTGTCGTCGTGTTGCCCGAGATCAGCAGTCATTGATGAACAATCCTGGAGATGAGAGACGCAGACAAAAGATTTTAGGTCTAAGAATTCATGGATT</canonical>
            <polymorphic>ATTAGAGAAAATATGGTAAATTTCAAATACCAGTTTAAGGGTTTTTGAAAGTAAAAAAACTGAGACCTTTTTTTTAAGAAGGAGAAGAATACGACAAAATAAGCAAGACCACTAAAAATCACTTCAAAATGTCAATGTCTGGAAAGTTCTAGGAAGAGGTTCTAGAATTTTCGAAGTTTCCAGAGATTGGCCACTTCTAAGAATTTCAATGATTTTGCAGTTCAGCTACCGTACTTTCTGTAACAACCACACATGTGGCTTTGTTGCCAATTATCTTGGATTTATCAAAAAGTTCTCAAGAATCAAAAAAAAATTATATTCGCCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAACGTGTTAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTYCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTTTCCAAAATTCTAAAAAAAGGGAGTTCAGAACTAAATATATGAAAATTCGTGTCCGAAACACTGGTGACTATTTCATCAGAACATCGGAACGAAAATCAAAAACTCGTCATCATCATCATCATCATCATCATCATCATCCGACGTGTCGTTTCTATCTCATTTCTTCTCAGGAAGAAGAAAAGTGTGCAATATATGTTACACACACTTTTGCCATACATCCGTATTTCTTGTGCTCTTTCTCTCTCATTTCTGCCATTGAAAATCTTGTCTTCAGAGAGAGCCCTAGTGTCTCTTTTTCCTCTTTTTTGTCGTCGTGTTGCCCGAGATCAGCAGTCATTGATGAACAATCCTGGAGATGAGAGACGCAGACAAAAGATTTTAGGTCTAAGAATTCATGGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAAACTTTGACATCTTCTGTA</pcr_primer_p1>
		<pcr_primer_p2>CAATCCAATAGACTGTAGTCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAACGTGTTAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTG</canonical_amplicon>
		<polymorphic_amplicon>CCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAACGTGTTAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTYCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35128</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>3122</contig_pos>
        <strand></strand>
        <context>caaagtGCAT[T/G]TTCWAAGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCAT</left_flank>
        <right_flank>TTCAAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAGTAAAAAAACTGAGACCTTTTTTTTAAGAAGGAGAAGAATACGACAAAATAAGCAAGACCACTAAAAATCACTTCAAAATGTCAATGTCTGGAAAGTTCTAGGAAGAGGTTCTAGAATTTTCGAAGTTTCCAGAGATTGGCCACTTCTAAGAATTTCAATGATTTTGCAGTTCAGCTACCGTACTTTCTGTAACAACCACACATGTGGCTTTGTTGCCAATTATCTTGGATTTATCAAAAAGTTCTCAAGAATCAAAAAAAAATTATATTCGCCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAACGTGTTAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTTTCCAAAATTCTAAAAAAAGGGAGTTCAGAACTAAATATATGAAAATTCGTGTCCGAAACACTGGTGACTATTTCATCAGAACATCGGAACGAAAATCAAAAACTCGTCATCATCATCATCATCATCATCATCATCATCCGACGTGTCGTTTCTATCTCATTTCTTCTCAGGAAGAAGAAAAGTGTGCAATATATGTTACACACACTTTTGCCATACATCCGTATTTCTTGTGCTCTTTCTCTCTCATTTCTGCCATTGAAAATCTTGTCTTCAGAGAGAGCCCTAGTGTCTCTTTTTCCTCTTTTTTGTCGTCGTGTTGCCCGAGATCAGCAGTCATTGATGAACAATCCTGGAGATGAGAGACGCAGACAAAAGATTTTAGGTCTAAGAATTCATGGATTCATCTGGAAACACGAAAGATCTACCGTAGGGTTCTAGAGACAATT</canonical>
            <polymorphic>TGAAAGTAAAAAAACTGAGACCTTTTTTTTAAGAAGGAGAAGAATACGACAAAATAAGCAAGACCACTAAAAATCACTTCAAAATGTCAATGTCTGGAAAGTTCTAGGAAGAGGTTCTAGAATTTTCGAAGTTTCCAGAGATTGGCCACTTCTAAGAATTTCAATGATTTTGCAGTTCAGCTACCGTACTTTCTGTAACAACCACACATGTGGCTTTGTTGCCAATTATCTTGGATTTATCAAAAAGTTCTCAAGAATCAAAAAAAAATTATATTCGCCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAACGTGTTAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATKTTCAAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTTTCCAAAATTCTAAAAAAAGGGAGTTCAGAACTAAATATATGAAAATTCGTGTCCGAAACACTGGTGACTATTTCATCAGAACATCGGAACGAAAATCAAAAACTCGTCATCATCATCATCATCATCATCATCATCATCCGACGTGTCGTTTCTATCTCATTTCTTCTCAGGAAGAAGAAAAGTGTGCAATATATGTTACACACACTTTTGCCATACATCCGTATTTCTTGTGCTCTTTCTCTCTCATTTCTGCCATTGAAAATCTTGTCTTCAGAGAGAGCCCTAGTGTCTCTTTTTCCTCTTTTTTGTCGTCGTGTTGCCCGAGATCAGCAGTCATTGATGAACAATCCTGGAGATGAGAGACGCAGACAAAAGATTTTAGGTCTAAGAATTCATGGATTCATCTGGAAACACGAAAGATCTACCGTAGGGTTCTAGAGACAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGTTGGGAGTGATTGAATTAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGGAAAAATTGCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>216</pcr_amplicon_size>
		<canonical_amplicon>TAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTTTCCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATKTTCAAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTTTCCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35129</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>3126</contig_pos>
        <strand></strand>
        <context>gtGCATKTTC[A/T]AAGTTTTGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTC</left_flank>
        <right_flank>AAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTAAAAAAACTGAGACCTTTTTTTTAAGAAGGAGAAGAATACGACAAAATAAGCAAGACCACTAAAAATCACTTCAAAATGTCAATGTCTGGAAAGTTCTAGGAAGAGGTTCTAGAATTTTCGAAGTTTCCAGAGATTGGCCACTTCTAAGAATTTCAATGATTTTGCAGTTCAGCTACCGTACTTTCTGTAACAACCACACATGTGGCTTTGTTGCCAATTATCTTGGATTTATCAAAAAGTTCTCAAGAATCAAAAAAAAATTATATTCGCCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAACGTGTTAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTTTCCAAAATTCTAAAAAAAGGGAGTTCAGAACTAAATATATGAAAATTCGTGTCCGAAACACTGGTGACTATTTCATCAGAACATCGGAACGAAAATCAAAAACTCGTCATCATCATCATCATCATCATCATCATCATCCGACGTGTCGTTTCTATCTCATTTCTTCTCAGGAAGAAGAAAAGTGTGCAATATATGTTACACACACTTTTGCCATACATCCGTATTTCTTGTGCTCTTTCTCTCTCATTTCTGCCATTGAAAATCTTGTCTTCAGAGAGAGCCCTAGTGTCTCTTTTTCCTCTTTTTTGTCGTCGTGTTGCCCGAGATCAGCAGTCATTGATGAACAATCCTGGAGATGAGAGACGCAGACAAAAGATTTTAGGTCTAAGAATTCATGGATTCATCTGGAAACACGAAAGATCTACCGTAGGGTTCTAGAGACAATTGGCA</canonical>
            <polymorphic>AGTAAAAAAACTGAGACCTTTTTTTTAAGAAGGAGAAGAATACGACAAAATAAGCAAGACCACTAAAAATCACTTCAAAATGTCAATGTCTGGAAAGTTCTAGGAAGAGGTTCTAGAATTTTCGAAGTTTCCAGAGATTGGCCACTTCTAAGAATTTCAATGATTTTGCAGTTCAGCTACCGTACTTTCTGTAACAACCACACATGTGGCTTTGTTGCCAATTATCTTGGATTTATCAAAAAGTTCTCAAGAATCAAAAAAAAATTATATTCGCCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAACGTGTTAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCWAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTTTCCAAAATTCTAAAAAAAGGGAGTTCAGAACTAAATATATGAAAATTCGTGTCCGAAACACTGGTGACTATTTCATCAGAACATCGGAACGAAAATCAAAAACTCGTCATCATCATCATCATCATCATCATCATCATCCGACGTGTCGTTTCTATCTCATTTCTTCTCAGGAAGAAGAAAAGTGTGCAATATATGTTACACACACTTTTGCCATACATCCGTATTTCTTGTGCTCTTTCTCTCTCATTTCTGCCATTGAAAATCTTGTCTTCAGAGAGAGCCCTAGTGTCTCTTTTTCCTCTTTTTTGTCGTCGTGTTGCCCGAGATCAGCAGTCATTGATGAACAATCCTGGAGATGAGAGACGCAGACAAAAGATTTTAGGTCTAAGAATTCATGGATTCATCTGGAAACACGAAAGATCTACCGTAGGGTTCTAGAGACAATTGGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGTTGGGAGTGATTGAATTAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGGAAAAATTGCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>216</pcr_amplicon_size>
		<canonical_amplicon>TAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTTTCCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCWAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTTTCCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35130</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>3209</contig_pos>
        <strand></strand>
        <context>GTTCAGAACT[A/G]AATATATGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAATTTTCAGCAATTTTTCCAAAATTCTAAAAAAAGGGAGTTCAGAACT</left_flank>
        <right_flank>AATATATGAAAATTCGTGTCCGAAACACTGGTGACTATTTCATCAGAACA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATGTCTGGAAAGTTCTAGGAAGAGGTTCTAGAATTTTCGAAGTTTCCAGAGATTGGCCACTTCTAAGAATTTCAATGATTTTGCAGTTCAGCTACCGTACTTTCTGTAACAACCACACATGTGGCTTTGTTGCCAATTATCTTGGATTTATCAAAAAGTTCTCAAGAATCAAAAAAAAATTATATTCGCCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAACGTGTTAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTTTCCAAAATTCTAAAAAAAGGGAGTTCAGAACTAAATATATGAAAATTCGTGTCCGAAACACTGGTGACTATTTCATCAGAACATCGGAACGAAAATCAAAAACTCGTCATCATCATCATCATCATCATCATCATCATCCGACGTGTCGTTTCTATCTCATTTCTTCTCAGGAAGAAGAAAAGTGTGCAATATATGTTACACACACTTTTGCCATACATCCGTATTTCTTGTGCTCTTTCTCTCTCATTTCTGCCATTGAAAATCTTGTCTTCAGAGAGAGCCCTAGTGTCTCTTTTTCCTCTTTTTTGTCGTCGTGTTGCCCGAGATCAGCAGTCATTGATGAACAATCCTGGAGATGAGAGACGCAGACAAAAGATTTTAGGTCTAAGAATTCATGGATTCATCTGGAAACACGAAAGATCTACCGTAGGGTTCTAGAGACAATTGGCAGTTTTCTAGAGAAAAAACACATGTGCTCGCTCATAGGATCACGATATAAGTTTCGGGTGTGTTCGGAGACGAATACCAGATGT</canonical>
            <polymorphic>CAATGTCTGGAAAGTTCTAGGAAGAGGTTCTAGAATTTTCGAAGTTTCCAGAGATTGGCCACTTCTAAGAATTTCAATGATTTTGCAGTTCAGCTACCGTACTTTCTGTAACAACCACACATGTGGCTTTGTTGCCAATTATCTTGGATTTATCAAAAAGTTCTCAAGAATCAAAAAAAAATTATATTCGCCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAACGTGTTAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTTTCCAAAATTCTAAAAAAAGGGAGTTCAGAACTRAATATATGAAAATTCGTGTCCGAAACACTGGTGACTATTTCATCAGAACATCGGAACGAAAATCAAAAACTCGTCATCATCATCATCATCATCATCATCATCATCCGACGTGTCGTTTCTATCTCATTTCTTCTCAGGAAGAAGAAAAGTGTGCAATATATGTTACACACACTTTTGCCATACATCCGTATTTCTTGTGCTCTTTCTCTCTCATTTCTGCCATTGAAAATCTTGTCTTCAGAGAGAGCCCTAGTGTCTCTTTTTCCTCTTTTTTGTCGTCGTGTTGCCCGAGATCAGCAGTCATTGATGAACAATCCTGGAGATGAGAGACGCAGACAAAAGATTTTAGGTCTAAGAATTCATGGATTCATCTGGAAACACGAAAGATCTACCGTAGGGTTCTAGAGACAATTGGCAGTTTTCTAGAGAAAAAACACATGTGCTCGCTCATAGGATCACGATATAAGTTTCGGGTGTGTTCGGAGACGAATACCAGATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGGAGTGATTGAATTATTG</pcr_primer_p1>
		<pcr_primer_p2>CGATGTTCTGATGAAATAGTCA</pcr_primer_p2>
		<pcr_amplicon_size>290</pcr_amplicon_size>
		<canonical_amplicon>TTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTTTCCAAAATTCTAAAAAAAGGGAGTTCAGAACTAAATATATGAAAATTCGTGTCCGAAACACTGGTGACTATTTCATCAGAACATCG</canonical_amplicon>
		<polymorphic_amplicon>TTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTTTCCAAAATTCTAAAAAAAGGGAGTTCAGAACTRAATATATGAAAATTCGTGTCCGAAACACTGGTGACTATTTCATCAGAACATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35131</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>3239</contig_pos>
        <strand></strand>
        <context>CCGAAACACT[G/A]RTGACTATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAAAAGGGAGTTCAGAACTAAATATATGAAAATTCGTGTCCGAAACACT</left_flank>
        <right_flank>GTGACTATTTCATCAGAACATCGGAACGAAAATCAAAAACTCGTCATCAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAATTTTCGAAGTTTCCAGAGATTGGCCACTTCTAAGAATTTCAATGATTTTGCAGTTCAGCTACCGTACTTTCTGTAACAACCACACATGTGGCTTTGTTGCCAATTATCTTGGATTTATCAAAAAGTTCTCAAGAATCAAAAAAAAATTATATTCGCCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAACGTGTTAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTTTCCAAAATTCTAAAAAAAGGGAGTTCAGAACTAAATATATGAAAATTCGTGTCCGAAACACTGGTGACTATTTCATCAGAACATCGGAACGAAAATCAAAAACTCGTCATCATCATCATCATCATCATCATCATCATCCGACGTGTCGTTTCTATCTCATTTCTTCTCAGGAAGAAGAAAAGTGTGCAATATATGTTACACACACTTTTGCCATACATCCGTATTTCTTGTGCTCTTTCTCTCTCATTTCTGCCATTGAAAATCTTGTCTTCAGAGAGAGCCCTAGTGTCTCTTTTTCCTCTTTTTTGTCGTCGTGTTGCCCGAGATCAGCAGTCATTGATGAACAATCCTGGAGATGAGAGACGCAGACAAAAGATTTTAGGTCTAAGAATTCATGGATTCATCTGGAAACACGAAAGATCTACCGTAGGGTTCTAGAGACAATTGGCAGTTTTCTAGAGAAAAAACACATGTGCTCGCTCATAGGATCACGATATAAGTTTCGGGTGTGTTCGGAGACGAATACCAGATGTGGGAGGTTTTAAAGGGACATGGGAAACTAA</canonical>
            <polymorphic>TAGAATTTTCGAAGTTTCCAGAGATTGGCCACTTCTAAGAATTTCAATGATTTTGCAGTTCAGCTACCGTACTTTCTGTAACAACCACACATGTGGCTTTGTTGCCAATTATCTTGGATTTATCAAAAAGTTCTCAAGAATCAAAAAAAAATTATATTCGCCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAACGTGTTAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTTTCCAAAATTCTAAAAAAAGGGAGTTCAGAACTAAATATATGAAAATTCGTGTCCGAAACACTRGTGACTATTTCATCAGAACATCGGAACGAAAATCAAAAACTCGTCATCATCATCATCATCATCATCATCATCATCCGACGTGTCGTTTCTATCTCATTTCTTCTCAGGAAGAAGAAAAGTGTGCAATATATGTTACACACACTTTTGCCATACATCCGTATTTCTTGTGCTCTTTCTCTCTCATTTCTGCCATTGAAAATCTTGTCTTCAGAGAGAGCCCTAGTGTCTCTTTTTCCTCTTTTTTGTCGTCGTGTTGCCCGAGATCAGCAGTCATTGATGAACAATCCTGGAGATGAGAGACGCAGACAAAAGATTTTAGGTCTAAGAATTCATGGATTCATCTGGAAACACGAAAGATCTACCGTAGGGTTCTAGAGACAATTGGCAGTTTTCTAGAGAAAAAACACATGTGCTCGCTCATAGGATCACGATATAAGTTTCGGGTGTGTTCGGAGACGAATACCAGATGTGGGAGGTTTTAAAGGGACATGGGAAACTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGGAGTGATTGAATTATTG</pcr_primer_p1>
		<pcr_primer_p2>CACACTTTTCTTCTTCCTGAGA</pcr_primer_p2>
		<pcr_amplicon_size>390</pcr_amplicon_size>
		<canonical_amplicon>TTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTTTCCAAAATTCTAAAAAAAGGGAGTTCAGAACTAAATATATGAAAATTCGTGTCCGAAACACTGGTGACTATTTCATCAGAACATCGGAACGAAAATCAAAAACTCGTCATCATCATCATCATCATCATCATCATCATCCGACGTGTCGTTTCTATCTCATTTCTTCTCAGGAAGAAGAAAAGTGTG</canonical_amplicon>
		<polymorphic_amplicon>TTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTTTCCAAAATTCTAAAAAAAGGGAGTTCAGAACTAAATATATGAAAATTCGTGTCCGAAACACTRGTGACTATTTCATCAGAACATCGGAACGAAAATCAAAAACTCGTCATCATCATCATCATCATCATCATCATCATCCGACGTGTCGTTTCTATCTCATTTCTTCTCAGGAAGAAGAAAAGTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35132</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>3240</contig_pos>
        <strand></strand>
        <context>CGAAACACTR[G/A]TGACTATTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAAAGGGAGTTCAGAACTAAATATATGAAAATTCGTGTCCGAAACACTG</left_flank>
        <right_flank>TGACTATTTCATCAGAACATCGGAACGAAAATCAAAAACTCGTCATCATC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAATTTTCGAAGTTTCCAGAGATTGGCCACTTCTAAGAATTTCAATGATTTTGCAGTTCAGCTACCGTACTTTCTGTAACAACCACACATGTGGCTTTGTTGCCAATTATCTTGGATTTATCAAAAAGTTCTCAAGAATCAAAAAAAAATTATATTCGCCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAACGTGTTAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTTTCCAAAATTCTAAAAAAAGGGAGTTCAGAACTAAATATATGAAAATTCGTGTCCGAAACACTGGTGACTATTTCATCAGAACATCGGAACGAAAATCAAAAACTCGTCATCATCATCATCATCATCATCATCATCATCCGACGTGTCGTTTCTATCTCATTTCTTCTCAGGAAGAAGAAAAGTGTGCAATATATGTTACACACACTTTTGCCATACATCCGTATTTCTTGTGCTCTTTCTCTCTCATTTCTGCCATTGAAAATCTTGTCTTCAGAGAGAGCCCTAGTGTCTCTTTTTCCTCTTTTTTGTCGTCGTGTTGCCCGAGATCAGCAGTCATTGATGAACAATCCTGGAGATGAGAGACGCAGACAAAAGATTTTAGGTCTAAGAATTCATGGATTCATCTGGAAACACGAAAGATCTACCGTAGGGTTCTAGAGACAATTGGCAGTTTTCTAGAGAAAAAACACATGTGCTCGCTCATAGGATCACGATATAAGTTTCGGGTGTGTTCGGAGACGAATACCAGATGTGGGAGGTTTTAAAGGGACATGGGAAACTAAA</canonical>
            <polymorphic>AGAATTTTCGAAGTTTCCAGAGATTGGCCACTTCTAAGAATTTCAATGATTTTGCAGTTCAGCTACCGTACTTTCTGTAACAACCACACATGTGGCTTTGTTGCCAATTATCTTGGATTTATCAAAAAGTTCTCAAGAATCAAAAAAAAATTATATTCGCCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAACGTGTTAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTTTCCAAAATTCTAAAAAAAGGGAGTTCAGAACTAAATATATGAAAATTCGTGTCCGAAACACTGRTGACTATTTCATCAGAACATCGGAACGAAAATCAAAAACTCGTCATCATCATCATCATCATCATCATCATCATCCGACGTGTCGTTTCTATCTCATTTCTTCTCAGGAAGAAGAAAAGTGTGCAATATATGTTACACACACTTTTGCCATACATCCGTATTTCTTGTGCTCTTTCTCTCTCATTTCTGCCATTGAAAATCTTGTCTTCAGAGAGAGCCCTAGTGTCTCTTTTTCCTCTTTTTTGTCGTCGTGTTGCCCGAGATCAGCAGTCATTGATGAACAATCCTGGAGATGAGAGACGCAGACAAAAGATTTTAGGTCTAAGAATTCATGGATTCATCTGGAAACACGAAAGATCTACCGTAGGGTTCTAGAGACAATTGGCAGTTTTCTAGAGAAAAAACACATGTGCTCGCTCATAGGATCACGATATAAGTTTCGGGTGTGTTCGGAGACGAATACCAGATGTGGGAGGTTTTAAAGGGACATGGGAAACTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>137 109 97 95 79 56 56 56 39 38 30 30 28 28 23 18 16 14 14 9 6 6 6 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>137 109 97 95 85 56 56 56 39 38 30 30 28 28 23 18 16 14 14 9 6 6 2 2 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>423 370 131 76</canonical_bands>
                <polymorphic_bands>554 370 76</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGGAGTGATTGAATTATTG</pcr_primer_p1>
		<pcr_primer_p2>CACACTTTTCTTCTTCCTGAGA</pcr_primer_p2>
		<pcr_amplicon_size>390</pcr_amplicon_size>
		<canonical_amplicon>TTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTTTCCAAAATTCTAAAAAAAGGGAGTTCAGAACTAAATATATGAAAATTCGTGTCCGAAACACTGGTGACTATTTCATCAGAACATCGGAACGAAAATCAAAAACTCGTCATCATCATCATCATCATCATCATCATCATCCGACGTGTCGTTTCTATCTCATTTCTTCTCAGGAAGAAGAAAAGTGTG</canonical_amplicon>
		<polymorphic_amplicon>TTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTTTCCAAAATTCTAAAAAAAGGGAGTTCAGAACTAAATATATGAAAATTCGTGTCCGAAACACTGRTGACTATTTCATCAGAACATCGGAACGAAAATCAAAAACTCGTCATCATCATCATCATCATCATCATCATCATCCGACGTGTCGTTTCTATCTCATTTCTTCTCAGGAAGAAGAAAAGTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35133</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>3332</contig_pos>
        <strand></strand>
        <context>TCGTTTCTAT[C/T]TCATTTCTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCATCATCATCATCATCATCATCATCATCATCCGACGTGTCGTTTCTAT</left_flank>
        <right_flank>TCATTTCTTCTCAGGAAGAAGAAAAGTGTGCAATATATGTTACACACACT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCTTTGTTGCCAATTATCTTGGATTTATCAAAAAGTTCTCAAGAATCAAAAAAAAATTATATTCGCCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAACGTGTTAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTTTCCAAAATTCTAAAAAAAGGGAGTTCAGAACTAAATATATGAAAATTCGTGTCCGAAACACTGGTGACTATTTCATCAGAACATCGGAACGAAAATCAAAAACTCGTCATCATCATCATCATCATCATCATCATCATCCGACGTGTCGTTTCTATCTCATTTCTTCTCAGGAAGAAGAAAAGTGTGCAATATATGTTACACACACTTTTGCCATACATCCGTATTTCTTGTGCTCTTTCTCTCTCATTTCTGCCATTGAAAATCTTGTCTTCAGAGAGAGCCCTAGTGTCTCTTTTTCCTCTTTTTTGTCGTCGTGTTGCCCGAGATCAGCAGTCATTGATGAACAATCCTGGAGATGAGAGACGCAGACAAAAGATTTTAGGTCTAAGAATTCATGGATTCATCTGGAAACACGAAAGATCTACCGTAGGGTTCTAGAGACAATTGGCAGTTTTCTAGAGAAAAAACACATGTGCTCGCTCATAGGATCACGATATAAGTTTCGGGTGTGTTCGGAGACGAATACCAGATGTGGGAGGTTTTAAAGGGACATGGGAAACTAAAGGATTCGAGAAAAATAATCAACTCTGAGCAACATCGGAGGAACTACTACATAAGAAAAGGGATGAAAGCAGAAGAAGAAGGGATTCGAAAAA</canonical>
            <polymorphic>TGGCTTTGTTGCCAATTATCTTGGATTTATCAAAAAGTTCTCAAGAATCAAAAAAAAATTATATTCGCCAAAACTTTGACATCTTCTGTATAAAGTGCCTAAAACTTTAAAAAATCGCATTTCAGAGGAAACGTGTTAAGTTGGGAGTGATTGAATTATTGGCTACGGTCTATTAAATTCTGTAATTTATTTTAAGTTTTTTTTTTCAAATAATATGATAAATAATTTATCAGTTCAAAATTTTTCTATATCTCTCATAGGAACCGAGATAATTGAGCTCAAAGTGCATTTTCAAAGTTTTGACTACAGTCTATTGGATTGTAAATTAAATTTTCAGCAATTTTTCCAAAATTCTAAAAAAAGGGAGTTCAGAACTAAATATATGAAAATTCGTGTCCGAAACACTGGTGACTATTTCATCAGAACATCGGAACGAAAATCAAAAACTCGTCATCATCATCATCATCATCATCATCATCATCCGACGTGTCGTTTCTATYTCATTTCTTCTCAGGAAGAAGAAAAGTGTGCAATATATGTTACACACACTTTTGCCATACATCCGTATTTCTTGTGCTCTTTCTCTCTCATTTCTGCCATTGAAAATCTTGTCTTCAGAGAGAGCCCTAGTGTCTCTTTTTCCTCTTTTTTGTCGTCGTGTTGCCCGAGATCAGCAGTCATTGATGAACAATCCTGGAGATGAGAGACGCAGACAAAAGATTTTAGGTCTAAGAATTCATGGATTCATCTGGAAACACGAAAGATCTACCGTAGGGTTCTAGAGACAATTGGCAGTTTTCTAGAGAAAAAACACATGTGCTCGCTCATAGGATCACGATATAAGTTTCGGGTGTGTTCGGAGACGAATACCAGATGTGGGAGGTTTTAAAGGGACATGGGAAACTAAAGGATTCGAGAAAAATAATCAACTCTGAGCAACATCGGAGGAACTACTACATAAGAAAAGGGATGAAAGCAGAAGAAGAAGGGATTCGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCATCAGAACATCGGAAC</pcr_primer_p1>
		<pcr_primer_p2>AAAGAGGAAAAAGAGACACTAGG</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>TTTCATCAGAACATCGGAACGAAAATCAAAAACTCGTCATCATCATCATCATCATCATCATCATCATCCGACGTGTCGTTTCTATCTCATTTCTTCTCAGGAAGAAGAAAAGTGTGCAATATATGTTACACACACTTTTGCCATACATCCGTATTTCTTGTGCTCTTTCTCTCTCATTTCTGCCATTGAAAATCTTGTCTTCAGAGAGAGCCCTAGTGTCTCTTTTTCCTCTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCATCAGAACATCGGAACGAAAATCAAAAACTCGTCATCATCATCATCATCATCATCATCATCATCCGACGTGTCGTTTCTATYTCATTTCTTCTCAGGAAGAAGAAAAGTGTGCAATATATGTTACACACACTTTTGCCATACATCCGTATTTCTTGTGCTCTTTCTCTCTCATTTCTGCCATTGAAAATCTTGTCTTCAGAGAGAGCCCTAGTGTCTCTTTTTCCTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35134</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>23912</contig_pos>
        <strand></strand>
        <context>tctgaaaatg[G/A]ccgaaaatca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTTCAAAGTGATCGTAAACTTGACAGCCGGGCTCCAGACTTCTGAAAATG</left_flank>
        <right_flank>CCGAAAATCAACGACAGGTACTGTATGAATCTTAGAGTCTCCAGAATTTT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATCTCGAAACATACAGTACCGGTCACTAAACCTTTTTGAAACTTTTAGGCTCATATTCGAAATTATACGCGGCTCTAATTAATGGGTGTGGTTCCATTTTTAGGGCATACCATACCTTTCAATAGGATATGCAAAAAAAAGGTGGGTTTTCGGCCATTTTGGCCATTTTTTAAATTTTGGACCTCGGATGCCATCTGTCCGATCACTTTGACAATTTTGGAGGGTGTAAAACAGATCTAGATTGGNTACTTTGCATTTGCAGAATTTTTTGAAAATTCCTAATTTTCCAGTTATTCATTGATTTTTGAAAGACACCCGTTTTCGTGCTGAAATGTGAAAAAACATGACACTTTTAGAAATCGGCAAATAGCTGAAAAACTAGGAATTTTCTGAAAGTTTTGTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACACCCTCCAAAATGTTCAAAGTGATCGTAAACTTGACAGCCGGGCTCCAGACTTCTGAAAATGGCCGAAAATCAACGACAGGTACTGTATGAATCTTAGAGTCTCCAGAATTTTCTAACCCTTTTTGAAACCGATAACATTTCTTAGAATTTATTTTAGACATTCTAGATGATTATAACCTGTCCTTCTGATTATCCGATTTTCGTCGTTTTCCGAATCCCGACATCACGTCTAGAGGCTTTTTCCTATTTTCTTCCACTTTTGTACTCCTCTTTCCATGTTTCCTCCGTCATCCATCATCCATTTTTTTCGGCTCCACAATCATCCCGTCAAACGGAGCCCAAACCAAAGGCACGTCTTCTTTTTTTCTTCCAGTCGATCGGACACGTCGATCTGTCAATCCACCTCATCATTATCTACCTCACAAATCGTTCCTCTTCTCCGTTGGGACGGCGACAAAAGGAACCGCCCATAAAAATCCCAGTCTTTCTTTTTCTTTTTTTTTGTTATTTGGAGGTGGGCTCTTTTTCTCCTTTTTCCTTTTCTTCTTCTTTTTCAACCGGT</canonical>
            <polymorphic>GAATCTCGAAACATACAGTACCGGTCACTAAACCTTTTTGAAACTTTTAGGCTCATATTCGAAATTATACGCGGCTCTAATTAATGGGTGTGGTTCCATTTTTAGGGCATACCATACCTTTCAATAGGATATGCAAAAAAAAGGTGGGTTTTCGGCCATTTTGGCCATTTTTTAAATTTTGGACCTCGGATGCCATCTGTCCGATCACTTTGACAATTTTGGAGGGTGTAAAACAGATCTAGATTGGNTACTTTGCATTTGCAGAATTTTTTGAAAATTCCTAATTTTCCAGTTATTCATTGATTTTTGAAAGACACCCGTTTTCGTGCTGAAATGTGAAAAAACATGACACTTTTAGAAATCGGCAAATAGCTGAAAAACTAGGAATTTTCTGAAAGTTTTGTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACACCCTCCAAAATGTTCAAAGTGATCGTAAACTTGACAGCCGGGCTCCAGACTTCTGAAAATGRCCGAAAATCAACGACAGGTACTGTATGAATCTTAGAGTCTCCAGAATTTTCTAACCCTTTTTGAAACCGATAACATTTCTTAGAATTTATTTTAGACATTCTAGATGATTATAACCTGTCCTTCTGATTATCCGATTTTCGTCGTTTTCCGAATCCCGACATCACGTCTAGAGGCTTTTTCCTATTTTCTTCCACTTTTGTACTCCTCTTTCCATGTTTCCTCCGTCATCCATCATCCATTTTTTTCGGCTCCACAATCATCCCGTCAAACGGAGCCCAAACCAAAGGCACGTCTTCTTTTTTTCTTCCAGTCGATCGGACACGTCGATCTGTCAATCCACCTCATCATTATCTACCTCACAAATCGTTCCTCTTCTCCGTTGGGACGGCGACAAAAGGAACCGCCCATAAAAATCCCAGTCTTTCTTTTTCTTTTTTTTTGTTATTTGGAGGTGGGCTCTTTTTCTCCTTTTTCCTTTTCTTCTTCTTTTTCAACCGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 336 155 9</canonical_bands>
                <polymorphic_bands>836 155 9</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 336 153 9</canonical_bands>
                <polymorphic_bands>838 153 9</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>208 182 174 103 81 75 51 43 26 23 20 9 5</canonical_bands>
                <polymorphic_bands>208 194 182 103 81 75 51 43 26 23 9 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTAATTAATGGGTGTGGTTC</pcr_primer_p1>
		<pcr_primer_p2>GAAATGTTATCGGTTTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>505</pcr_amplicon_size>
		<canonical_amplicon>CTCTAATTAATGGGTGTGGTTCCATTTTTAGGGCATACCATACCTTTCAATAGGATATGCAAAAAAAAGGTGGGTTTTCGGCCATTTTGGCCATTTTTTAAATTTTGGACCTCGGATGCCATCTGTCCGATCACTTTGACAATTTTGGAGGGTGTAAAACAGATCTAGATTGGNTACTTTGCATTTGCAGAATTTTTTGAAAATTCCTAATTTTCCAGTTATTCATTGATTTTTGAAAGACACCCGTTTTCGTGCTGAAATGTGAAAAAACATGACACTTTTAGAAATCGGCAAATAGCTGAAAAACTAGGAATTTTCTGAAAGTTTTGTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACACCCTCCAAAATGTTCAAAGTGATCGTAAACTTGACAGCCGGGCTCCAGACTTCTGAAAATGGCCGAAAATCAACGACAGGTACTGTATGAATCTTAGAGTCTCCAGAATTTTCTAACCCTTTTTGAAACCGATAACATTTC</canonical_amplicon>
		<polymorphic_amplicon>CTCTAATTAATGGGTGTGGTTCCATTTTTAGGGCATACCATACCTTTCAATAGGATATGCAAAAAAAAGGTGGGTTTTCGGCCATTTTGGCCATTTTTTAAATTTTGGACCTCGGATGCCATCTGTCCGATCACTTTGACAATTTTGGAGGGTGTAAAACAGATCTAGATTGGNTACTTTGCATTTGCAGAATTTTTTGAAAATTCCTAATTTTCCAGTTATTCATTGATTTTTGAAAGACACCCGTTTTCGTGCTGAAATGTGAAAAAACATGACACTTTTAGAAATCGGCAAATAGCTGAAAAACTAGGAATTTTCTGAAAGTTTTGTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACACCCTCCAAAATGTTCAAAGTGATCGTAAACTTGACAGCCGGGCTCCAGACTTCTGAAAATGRCCGAAAATCAACGACAGGTACTGTATGAATCTTAGAGTCTCCAGAATTTTCTAACCCTTTTTGAAACCGATAACATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35135</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>23969</contig_pos>
        <strand></strand>
        <context>TTTTCTAACC[C/T]TTTTTGAAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCAACGACAGGTACTGTATGAATCTTAGAGTCTCCAGAATTTTCTAACC</left_flank>
        <right_flank>TTTTTGAAACCGATAACATTTCTTAGAATTTATTTTAGACATTCTAGATG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGAAATTATACGCGGCTCTAATTAATGGGTGTGGTTCCATTTTTAGGGCATACCATACCTTTCAATAGGATATGCAAAAAAAAGGTGGGTTTTCGGCCATTTTGGCCATTTTTTAAATTTTGGACCTCGGATGCCATCTGTCCGATCACTTTGACAATTTTGGAGGGTGTAAAACAGATCTAGATTGGNTACTTTGCATTTGCAGAATTTTTTGAAAATTCCTAATTTTCCAGTTATTCATTGATTTTTGAAAGACACCCGTTTTCGTGCTGAAATGTGAAAAAACATGACACTTTTAGAAATCGGCAAATAGCTGAAAAACTAGGAATTTTCTGAAAGTTTTGTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACACCCTCCAAAATGTTCAAAGTGATCGTAAACTTGACAGCCGGGCTCCAGACTTCTGAAAATGGCCGAAAATCAACGACAGGTACTGTATGAATCTTAGAGTCTCCAGAATTTTCTAACCCTTTTTGAAACCGATAACATTTCTTAGAATTTATTTTAGACATTCTAGATGATTATAACCTGTCCTTCTGATTATCCGATTTTCGTCGTTTTCCGAATCCCGACATCACGTCTAGAGGCTTTTTCCTATTTTCTTCCACTTTTGTACTCCTCTTTCCATGTTTCCTCCGTCATCCATCATCCATTTTTTTCGGCTCCACAATCATCCCGTCAAACGGAGCCCAAACCAAAGGCACGTCTTCTTTTTTTCTTCCAGTCGATCGGACACGTCGATCTGTCAATCCACCTCATCATTATCTACCTCACAAATCGTTCCTCTTCTCCGTTGGGACGGCGACAAAAGGAACCGCCCATAAAAATCCCAGTCTTTCTTTTTCTTTTTTTTTGTTATTTGGAGGTGGGCTCTTTTTCTCCTTTTTCCTTTTCTTCTTCTTTTTCAACCGGTGCCTCCTGGAGATTTTTGTGTGTTCACTCCAAAGGTCCATGGCTCTTCCCACACATT</canonical>
            <polymorphic>TTCGAAATTATACGCGGCTCTAATTAATGGGTGTGGTTCCATTTTTAGGGCATACCATACCTTTCAATAGGATATGCAAAAAAAAGGTGGGTTTTCGGCCATTTTGGCCATTTTTTAAATTTTGGACCTCGGATGCCATCTGTCCGATCACTTTGACAATTTTGGAGGGTGTAAAACAGATCTAGATTGGNTACTTTGCATTTGCAGAATTTTTTGAAAATTCCTAATTTTCCAGTTATTCATTGATTTTTGAAAGACACCCGTTTTCGTGCTGAAATGTGAAAAAACATGACACTTTTAGAAATCGGCAAATAGCTGAAAAACTAGGAATTTTCTGAAAGTTTTGTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACACCCTCCAAAATGTTCAAAGTGATCGTAAACTTGACAGCCGGGCTCCAGACTTCTGAAAATGGCCGAAAATCAACGACAGGTACTGTATGAATCTTAGAGTCTCCAGAATTTTCTAACCYTTTTTGAAACCGATAACATTTCTTAGAATTTATTTTAGACATTCTAGATGATTATAACCTGTCCTTCTGATTATCCGATTTTCGTCGTTTTCCGAATCCCGACATCACGTCTAGAGGCTTTTTCCTATTTTCTTCCACTTTTGTACTCCTCTTTCCATGTTTCCTCCGTCATCCATCATCCATTTTTTTCGGCTCCACAATCATCCCGTCAAACGGAGCCCAAACCAAAGGCACGTCTTCTTTTTTTCTTCCAGTCGATCGGACACGTCGATCTGTCAATCCACCTCATCATTATCTACCTCACAAATCGTTCCTCTTCTCCGTTGGGACGGCGACAAAAGGAACCGCCCATAAAAATCCCAGTCTTTCTTTTTCTTTTTTTTTGTTATTTGGAGGTGGGCTCTTTTTCTCCTTTTTCCTTTTCTTCTTCTTTTTCAACCGGTGCCTCCTGGAGATTTTTGTGTGTTCACTCCAAAGGTCCATGGCTCTTCCCACACATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTAATTAATGGGTGTGGTTC</pcr_primer_p1>
		<pcr_primer_p2>GGATAATCAGAAGGACAGGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>559</pcr_amplicon_size>
		<canonical_amplicon>CTCTAATTAATGGGTGTGGTTCCATTTTTAGGGCATACCATACCTTTCAATAGGATATGCAAAAAAAAGGTGGGTTTTCGGCCATTTTGGCCATTTTTTAAATTTTGGACCTCGGATGCCATCTGTCCGATCACTTTGACAATTTTGGAGGGTGTAAAACAGATCTAGATTGGNTACTTTGCATTTGCAGAATTTTTTGAAAATTCCTAATTTTCCAGTTATTCATTGATTTTTGAAAGACACCCGTTTTCGTGCTGAAATGTGAAAAAACATGACACTTTTAGAAATCGGCAAATAGCTGAAAAACTAGGAATTTTCTGAAAGTTTTGTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACACCCTCCAAAATGTTCAAAGTGATCGTAAACTTGACAGCCGGGCTCCAGACTTCTGAAAATGGCCGAAAATCAACGACAGGTACTGTATGAATCTTAGAGTCTCCAGAATTTTCTAACCCTTTTTGAAACCGATAACATTTCTTAGAATTTATTTTAGACATTCTAGATGATTATAACCTGTCCTTCTGATTATCC</canonical_amplicon>
		<polymorphic_amplicon>CTCTAATTAATGGGTGTGGTTCCATTTTTAGGGCATACCATACCTTTCAATAGGATATGCAAAAAAAAGGTGGGTTTTCGGCCATTTTGGCCATTTTTTAAATTTTGGACCTCGGATGCCATCTGTCCGATCACTTTGACAATTTTGGAGGGTGTAAAACAGATCTAGATTGGNTACTTTGCATTTGCAGAATTTTTTGAAAATTCCTAATTTTCCAGTTATTCATTGATTTTTGAAAGACACCCGTTTTCGTGCTGAAATGTGAAAAAACATGACACTTTTAGAAATCGGCAAATAGCTGAAAAACTAGGAATTTTCTGAAAGTTTTGTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACACCCTCCAAAATGTTCAAAGTGATCGTAAACTTGACAGCCGGGCTCCAGACTTCTGAAAATGGCCGAAAATCAACGACAGGTACTGTATGAATCTTAGAGTCTCCAGAATTTTCTAACCYTTTTTGAAACCGATAACATTTCTTAGAATTTATTTTAGACATTCTAGATGATTATAACCTGTCCTTCTGATTATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35136</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>24009</contig_pos>
        <strand></strand>
        <context>TTATTTTAGA[C/T]ATTCTAGATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCTAACCCTTTTTGAAACCGATAACATTTCTTAGAATTTATTTTAGA</left_flank>
        <right_flank>ATTCTAGATGATTATAACCTGTCCTTCTGATTATCCGATTTTCGTCGTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTAGGGCATACCATACCTTTCAATAGGATATGCAAAAAAAAGGTGGGTTTTCGGCCATTTTGGCCATTTTTTAAATTTTGGACCTCGGATGCCATCTGTCCGATCACTTTGACAATTTTGGAGGGTGTAAAACAGATCTAGATTGGNTACTTTGCATTTGCAGAATTTTTTGAAAATTCCTAATTTTCCAGTTATTCATTGATTTTTGAAAGACACCCGTTTTCGTGCTGAAATGTGAAAAAACATGACACTTTTAGAAATCGGCAAATAGCTGAAAAACTAGGAATTTTCTGAAAGTTTTGTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACACCCTCCAAAATGTTCAAAGTGATCGTAAACTTGACAGCCGGGCTCCAGACTTCTGAAAATGGCCGAAAATCAACGACAGGTACTGTATGAATCTTAGAGTCTCCAGAATTTTCTAACCCTTTTTGAAACCGATAACATTTCTTAGAATTTATTTTAGACATTCTAGATGATTATAACCTGTCCTTCTGATTATCCGATTTTCGTCGTTTTCCGAATCCCGACATCACGTCTAGAGGCTTTTTCCTATTTTCTTCCACTTTTGTACTCCTCTTTCCATGTTTCCTCCGTCATCCATCATCCATTTTTTTCGGCTCCACAATCATCCCGTCAAACGGAGCCCAAACCAAAGGCACGTCTTCTTTTTTTCTTCCAGTCGATCGGACACGTCGATCTGTCAATCCACCTCATCATTATCTACCTCACAAATCGTTCCTCTTCTCCGTTGGGACGGCGACAAAAGGAACCGCCCATAAAAATCCCAGTCTTTCTTTTTCTTTTTTTTTGTTATTTGGAGGTGGGCTCTTTTTCTCCTTTTTCCTTTTCTTCTTCTTTTTCAACCGGTGCCTCCTGGAGATTTTTGTGTGTTCACTCCAAAGGTCCATGGCTCTTCCCACACATTTCTTCCCTTCTTCTTTTCTTCTTTTTTCTGTTACTCTGGT</canonical>
            <polymorphic>ATTTTTAGGGCATACCATACCTTTCAATAGGATATGCAAAAAAAAGGTGGGTTTTCGGCCATTTTGGCCATTTTTTAAATTTTGGACCTCGGATGCCATCTGTCCGATCACTTTGACAATTTTGGAGGGTGTAAAACAGATCTAGATTGGNTACTTTGCATTTGCAGAATTTTTTGAAAATTCCTAATTTTCCAGTTATTCATTGATTTTTGAAAGACACCCGTTTTCGTGCTGAAATGTGAAAAAACATGACACTTTTAGAAATCGGCAAATAGCTGAAAAACTAGGAATTTTCTGAAAGTTTTGTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACACCCTCCAAAATGTTCAAAGTGATCGTAAACTTGACAGCCGGGCTCCAGACTTCTGAAAATGGCCGAAAATCAACGACAGGTACTGTATGAATCTTAGAGTCTCCAGAATTTTCTAACCCTTTTTGAAACCGATAACATTTCTTAGAATTTATTTTAGAYATTCTAGATGATTATAACCTGTCCTTCTGATTATCCGATTTTCGTCGTTTTCCGAATCCCGACATCACGTCTAGAGGCTTTTTCCTATTTTCTTCCACTTTTGTACTCCTCTTTCCATGTTTCCTCCGTCATCCATCATCCATTTTTTTCGGCTCCACAATCATCCCGTCAAACGGAGCCCAAACCAAAGGCACGTCTTCTTTTTTTCTTCCAGTCGATCGGACACGTCGATCTGTCAATCCACCTCATCATTATCTACCTCACAAATCGTTCCTCTTCTCCGTTGGGACGGCGACAAAAGGAACCGCCCATAAAAATCCCAGTCTTTCTTTTTCTTTTTTTTTGTTATTTGGAGGTGGGCTCTTTTTCTCCTTTTTCCTTTTCTTCTTCTTTTTCAACCGGTGCCTCCTGGAGATTTTTGTGTGTTCACTCCAAAGGTCCATGGCTCTTCCCACACATTTCTTCCCTTCTTCTTTTCTTCTTTTTTCTGTTACTCTGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTAATTAATGGGTGTGGTTC</pcr_primer_p1>
		<pcr_primer_p2>AAGAAAATAGGAAAAAGCCTCTA</pcr_primer_p2>
		<pcr_amplicon_size>617</pcr_amplicon_size>
		<canonical_amplicon>ACATTCTAGATGATTATAACCTGTCCTTCTGATTATCCGATTTTCGTCGTTTTCCGAATCCCGACATCACGTCTAGAGGCTTTTTCCTATTTTCTT</canonical_amplicon>
		<polymorphic_amplicon>AYATTCTAGATGATTATAACCTGTCCTTCTGATTATCCGATTTTCGTCGTTTTCCGAATCCCGACATCACGTCTAGAGGCTTTTTCCTATTTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35137</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>24021</contig_pos>
        <strand></strand>
        <context>TTCTAGATGA[T/C]TATAACCTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTGAAACCGATAACATTTCTTAGAATTTATTTTAGACATTCTAGATGA</left_flank>
        <right_flank>TATAACCTGTCCTTCTGATTATCCGATTTTCGTCGTTTTCCGAATCCCGA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACCATACCTTTCAATAGGATATGCAAAAAAAAGGTGGGTTTTCGGCCATTTTGGCCATTTTTTAAATTTTGGACCTCGGATGCCATCTGTCCGATCACTTTGACAATTTTGGAGGGTGTAAAACAGATCTAGATTGGNTACTTTGCATTTGCAGAATTTTTTGAAAATTCCTAATTTTCCAGTTATTCATTGATTTTTGAAAGACACCCGTTTTCGTGCTGAAATGTGAAAAAACATGACACTTTTAGAAATCGGCAAATAGCTGAAAAACTAGGAATTTTCTGAAAGTTTTGTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACACCCTCCAAAATGTTCAAAGTGATCGTAAACTTGACAGCCGGGCTCCAGACTTCTGAAAATGGCCGAAAATCAACGACAGGTACTGTATGAATCTTAGAGTCTCCAGAATTTTCTAACCCTTTTTGAAACCGATAACATTTCTTAGAATTTATTTTAGACATTCTAGATGATTATAACCTGTCCTTCTGATTATCCGATTTTCGTCGTTTTCCGAATCCCGACATCACGTCTAGAGGCTTTTTCCTATTTTCTTCCACTTTTGTACTCCTCTTTCCATGTTTCCTCCGTCATCCATCATCCATTTTTTTCGGCTCCACAATCATCCCGTCAAACGGAGCCCAAACCAAAGGCACGTCTTCTTTTTTTCTTCCAGTCGATCGGACACGTCGATCTGTCAATCCACCTCATCATTATCTACCTCACAAATCGTTCCTCTTCTCCGTTGGGACGGCGACAAAAGGAACCGCCCATAAAAATCCCAGTCTTTCTTTTTCTTTTTTTTTGTTATTTGGAGGTGGGCTCTTTTTCTCCTTTTTCCTTTTCTTCTTCTTTTTCAACCGGTGCCTCCTGGAGATTTTTGTGTGTTCACTCCAAAGGTCCATGGCTCTTCCCACACATTTCTTCCCTTCTTCTTTTCTTCTTTTTTCTGTTACTCTGGTTTTTGATCGACC</canonical>
            <polymorphic>TACCATACCTTTCAATAGGATATGCAAAAAAAAGGTGGGTTTTCGGCCATTTTGGCCATTTTTTAAATTTTGGACCTCGGATGCCATCTGTCCGATCACTTTGACAATTTTGGAGGGTGTAAAACAGATCTAGATTGGNTACTTTGCATTTGCAGAATTTTTTGAAAATTCCTAATTTTCCAGTTATTCATTGATTTTTGAAAGACACCCGTTTTCGTGCTGAAATGTGAAAAAACATGACACTTTTAGAAATCGGCAAATAGCTGAAAAACTAGGAATTTTCTGAAAGTTTTGTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACACCCTCCAAAATGTTCAAAGTGATCGTAAACTTGACAGCCGGGCTCCAGACTTCTGAAAATGGCCGAAAATCAACGACAGGTACTGTATGAATCTTAGAGTCTCCAGAATTTTCTAACCCTTTTTGAAACCGATAACATTTCTTAGAATTTATTTTAGACATTCTAGATGAYTATAACCTGTCCTTCTGATTATCCGATTTTCGTCGTTTTCCGAATCCCGACATCACGTCTAGAGGCTTTTTCCTATTTTCTTCCACTTTTGTACTCCTCTTTCCATGTTTCCTCCGTCATCCATCATCCATTTTTTTCGGCTCCACAATCATCCCGTCAAACGGAGCCCAAACCAAAGGCACGTCTTCTTTTTTTCTTCCAGTCGATCGGACACGTCGATCTGTCAATCCACCTCATCATTATCTACCTCACAAATCGTTCCTCTTCTCCGTTGGGACGGCGACAAAAGGAACCGCCCATAAAAATCCCAGTCTTTCTTTTTCTTTTTTTTTGTTATTTGGAGGTGGGCTCTTTTTCTCCTTTTTCCTTTTCTTCTTCTTTTTCAACCGGTGCCTCCTGGAGATTTTTGTGTGTTCACTCCAAAGGTCCATGGCTCTTCCCACACATTTCTTCCCTTCTTCTTTTCTTCTTTTTTCTGTTACTCTGGTTTTTGATCGACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTAATTAATGGGTGTGGTTC</pcr_primer_p1>
		<pcr_primer_p2>AAGAAAATAGGAAAAAGCCTCTA</pcr_primer_p2>
		<pcr_amplicon_size>617</pcr_amplicon_size>
		<canonical_amplicon>ATTATAACCTGTCCTTCTGATTATCCGATTTTCGTCGTTTTCCGAATCCCGACATCACGTCTAGAGGCTTTTTCCTATTTTCTT</canonical_amplicon>
		<polymorphic_amplicon>AYTATAACCTGTCCTTCTGATTATCCGATTTTCGTCGTTTTCCGAATCCCGACATCACGTCTAGAGGCTTTTTCCTATTTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35138</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>24052</contig_pos>
        <strand></strand>
        <context>ATCCGATTTT[C/G]GTCGTTTTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTAGACATTCTAGATGATTATAACCTGTCCTTCTGATTATCCGATTTT</left_flank>
        <right_flank>GTCGTTTTCCGAATCCCGACATCACGTCTAGAGGCTTTTTCCTATTTTCT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGGTGGGTTTTCGGCCATTTTGGCCATTTTTTAAATTTTGGACCTCGGATGCCATCTGTCCGATCACTTTGACAATTTTGGAGGGTGTAAAACAGATCTAGATTGGNTACTTTGCATTTGCAGAATTTTTTGAAAATTCCTAATTTTCCAGTTATTCATTGATTTTTGAAAGACACCCGTTTTCGTGCTGAAATGTGAAAAAACATGACACTTTTAGAAATCGGCAAATAGCTGAAAAACTAGGAATTTTCTGAAAGTTTTGTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACACCCTCCAAAATGTTCAAAGTGATCGTAAACTTGACAGCCGGGCTCCAGACTTCTGAAAATGGCCGAAAATCAACGACAGGTACTGTATGAATCTTAGAGTCTCCAGAATTTTCTAACCCTTTTTGAAACCGATAACATTTCTTAGAATTTATTTTAGACATTCTAGATGATTATAACCTGTCCTTCTGATTATCCGATTTTCGTCGTTTTCCGAATCCCGACATCACGTCTAGAGGCTTTTTCCTATTTTCTTCCACTTTTGTACTCCTCTTTCCATGTTTCCTCCGTCATCCATCATCCATTTTTTTCGGCTCCACAATCATCCCGTCAAACGGAGCCCAAACCAAAGGCACGTCTTCTTTTTTTCTTCCAGTCGATCGGACACGTCGATCTGTCAATCCACCTCATCATTATCTACCTCACAAATCGTTCCTCTTCTCCGTTGGGACGGCGACAAAAGGAACCGCCCATAAAAATCCCAGTCTTTCTTTTTCTTTTTTTTTGTTATTTGGAGGTGGGCTCTTTTTCTCCTTTTTCCTTTTCTTCTTCTTTTTCAACCGGTGCCTCCTGGAGATTTTTGTGTGTTCACTCCAAAGGTCCATGGCTCTTCCCACACATTTCTTCCCTTCTTCTTTTCTTCTTTTTTCTGTTACTCTGGTTTTTGATCGACCAAAGAGAATGGGAAGAATAGGATTAACTTTT</canonical>
            <polymorphic>AAGGTGGGTTTTCGGCCATTTTGGCCATTTTTTAAATTTTGGACCTCGGATGCCATCTGTCCGATCACTTTGACAATTTTGGAGGGTGTAAAACAGATCTAGATTGGNTACTTTGCATTTGCAGAATTTTTTGAAAATTCCTAATTTTCCAGTTATTCATTGATTTTTGAAAGACACCCGTTTTCGTGCTGAAATGTGAAAAAACATGACACTTTTAGAAATCGGCAAATAGCTGAAAAACTAGGAATTTTCTGAAAGTTTTGTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACACCCTCCAAAATGTTCAAAGTGATCGTAAACTTGACAGCCGGGCTCCAGACTTCTGAAAATGGCCGAAAATCAACGACAGGTACTGTATGAATCTTAGAGTCTCCAGAATTTTCTAACCCTTTTTGAAACCGATAACATTTCTTAGAATTTATTTTAGACATTCTAGATGATTATAACCTGTCCTTCTGATTATCCGATTTTSGTCGTTTTCCGAATCCCGACATCACGTCTAGAGGCTTTTTCCTATTTTCTTCCACTTTTGTACTCCTCTTTCCATGTTTCCTCCGTCATCCATCATCCATTTTTTTCGGCTCCACAATCATCCCGTCAAACGGAGCCCAAACCAAAGGCACGTCTTCTTTTTTTCTTCCAGTCGATCGGACACGTCGATCTGTCAATCCACCTCATCATTATCTACCTCACAAATCGTTCCTCTTCTCCGTTGGGACGGCGACAAAAGGAACCGCCCATAAAAATCCCAGTCTTTCTTTTTCTTTTTTTTTGTTATTTGGAGGTGGGCTCTTTTTCTCCTTTTTCCTTTTCTTCTTCTTTTTCAACCGGTGCCTCCTGGAGATTTTTGTGTGTTCACTCCAAAGGTCCATGGCTCTTCCCACACATTTCTTCCCTTCTTCTTTTCTTCTTTTTTCTGTTACTCTGGTTTTTGATCGACCAAAGAGAATGGGAAGAATAGGATTAACTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>504 313 183</canonical_bands>
                <polymorphic_bands>687 313</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAAACCGATAACATTTCTTAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAATGGATGATGGATGAC</pcr_primer_p2>
		<pcr_amplicon_size>184</pcr_amplicon_size>
		<canonical_amplicon>TTGAAACCGATAACATTTCTTAGAATTTATTTTAGACATTCTAGATGATTATAACCTGTCCTTCTGATTATCCGATTTTCGTCGTTTTCCGAATCCCGACATCACGTCTAGAGGCTTTTTCCTATTTTCTTCCACTTTTGTACTCCTCTTTCCATGTTTCCTCCGTCATCCATCATCCATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGAAACCGATAACATTTCTTAGAATTTATTTTAGACATTCTAGATGATTATAACCTGTCCTTCTGATTATCCGATTTTSGTCGTTTTCCGAATCCCGACATCACGTCTAGAGGCTTTTTCCTATTTTCTTCCACTTTTGTACTCCTCTTTCCATGTTTCCTCCGTCATCCATCATCCATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35139</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>24077</contig_pos>
        <strand></strand>
        <context>CCCGACATCA[C/T]GTCTAGAGGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTGTCCTTCTGATTATCCGATTTTCGTCGTTTTCCGAATCCCGACATCA</left_flank>
        <right_flank>GTCTAGAGGCTTTTTCCTATTTTCTTCCACTTTTGTACTCCTCTTTCCAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTTTTAAATTTTGGACCTCGGATGCCATCTGTCCGATCACTTTGACAATTTTGGAGGGTGTAAAACAGATCTAGATTGGNTACTTTGCATTTGCAGAATTTTTTGAAAATTCCTAATTTTCCAGTTATTCATTGATTTTTGAAAGACACCCGTTTTCGTGCTGAAATGTGAAAAAACATGACACTTTTAGAAATCGGCAAATAGCTGAAAAACTAGGAATTTTCTGAAAGTTTTGTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACACCCTCCAAAATGTTCAAAGTGATCGTAAACTTGACAGCCGGGCTCCAGACTTCTGAAAATGGCCGAAAATCAACGACAGGTACTGTATGAATCTTAGAGTCTCCAGAATTTTCTAACCCTTTTTGAAACCGATAACATTTCTTAGAATTTATTTTAGACATTCTAGATGATTATAACCTGTCCTTCTGATTATCCGATTTTCGTCGTTTTCCGAATCCCGACATCACGTCTAGAGGCTTTTTCCTATTTTCTTCCACTTTTGTACTCCTCTTTCCATGTTTCCTCCGTCATCCATCATCCATTTTTTTCGGCTCCACAATCATCCCGTCAAACGGAGCCCAAACCAAAGGCACGTCTTCTTTTTTTCTTCCAGTCGATCGGACACGTCGATCTGTCAATCCACCTCATCATTATCTACCTCACAAATCGTTCCTCTTCTCCGTTGGGACGGCGACAAAAGGAACCGCCCATAAAAATCCCAGTCTTTCTTTTTCTTTTTTTTTGTTATTTGGAGGTGGGCTCTTTTTCTCCTTTTTCCTTTTCTTCTTCTTTTTCAACCGGTGCCTCCTGGAGATTTTTGTGTGTTCACTCCAAAGGTCCATGGCTCTTCCCACACATTTCTTCCCTTCTTCTTTTCTTCTTTTTTCTGTTACTCTGGTTTTTGATCGACCAAAGAGAATGGGAAGAATAGGATTAACTTTTGGAGAAAAAAGAAAATAAAGAAGGT</canonical>
            <polymorphic>CATTTTTTAAATTTTGGACCTCGGATGCCATCTGTCCGATCACTTTGACAATTTTGGAGGGTGTAAAACAGATCTAGATTGGNTACTTTGCATTTGCAGAATTTTTTGAAAATTCCTAATTTTCCAGTTATTCATTGATTTTTGAAAGACACCCGTTTTCGTGCTGAAATGTGAAAAAACATGACACTTTTAGAAATCGGCAAATAGCTGAAAAACTAGGAATTTTCTGAAAGTTTTGTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACACCCTCCAAAATGTTCAAAGTGATCGTAAACTTGACAGCCGGGCTCCAGACTTCTGAAAATGGCCGAAAATCAACGACAGGTACTGTATGAATCTTAGAGTCTCCAGAATTTTCTAACCCTTTTTGAAACCGATAACATTTCTTAGAATTTATTTTAGACATTCTAGATGATTATAACCTGTCCTTCTGATTATCCGATTTTCGTCGTTTTCCGAATCCCGACATCAYGTCTAGAGGCTTTTTCCTATTTTCTTCCACTTTTGTACTCCTCTTTCCATGTTTCCTCCGTCATCCATCATCCATTTTTTTCGGCTCCACAATCATCCCGTCAAACGGAGCCCAAACCAAAGGCACGTCTTCTTTTTTTCTTCCAGTCGATCGGACACGTCGATCTGTCAATCCACCTCATCATTATCTACCTCACAAATCGTTCCTCTTCTCCGTTGGGACGGCGACAAAAGGAACCGCCCATAAAAATCCCAGTCTTTCTTTTTCTTTTTTTTTGTTATTTGGAGGTGGGCTCTTTTTCTCCTTTTTCCTTTTCTTCTTCTTTTTCAACCGGTGCCTCCTGGAGATTTTTGTGTGTTCACTCCAAAGGTCCATGGCTCTTCCCACACATTTCTTCCCTTCTTCTTTTCTTCTTTTTTCTGTTACTCTGGTTTTTGATCGACCAAAGAGAATGGGAAGAATAGGATTAACTTTTGGAGAAAAAAGAAAATAAAGAAGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>205 112 95 88 60 54 46 42 36 33 32 30 25 21 21 20 19 18 13 12 10 4 2 2</canonical_bands>
                <polymorphic_bands>235 112 95 88 60 54 46 42 36 33 32 25 21 21 20 19 18 13 12 10 4 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>499 343 126 32</canonical_bands>
                <polymorphic_bands>625 343 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAACCTGTCCTTCTGATTATCC</pcr_primer_p1>
		<pcr_primer_p2>GTAGATAATGATGAGGTGGATTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATAACCTGTCCTTCTGATTATCCGATTTTCGTCGTTTTCCGAATCCCGACATCACGTCTAGAGGCTTTTTCCTATTTTCTTCCACTTTTGTACTCCTCTTTCCATGTTTCCTCCGTCATCCATCATCCATTTTTTTCGGCTCCACAATCATCCCGTCAAACGGAGCCCAAACCAAAGGCACGTCTTCTTTTTTTCTTCCAGTCGATCGGACACGTCGATCTGTCAATCCACCTCATCATTATCTAC</canonical_amplicon>
		<polymorphic_amplicon>ATAACCTGTCCTTCTGATTATCCGATTTTCGTCGTTTTCCGAATCCCGACATCAYGTCTAGAGGCTTTTTCCTATTTTCTTCCACTTTTGTACTCCTCTTTCCATGTTTCCTCCGTCATCCATCATCCATTTTTTTCGGCTCCACAATCATCCCGTCAAACGGAGCCCAAACCAAAGGCACGTCTTCTTTTTTTCTTCCAGTCGATCGGACACGTCGATCTGTCAATCCACCTCATCATTATCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35140</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>24285</contig_pos>
        <strand></strand>
        <context>AATCGTTCCT[C/T]TTCTCCGTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTCGATCTGTCAATCCACCTCATCATTATCTACCTCACAAATCGTTCCT</left_flank>
        <right_flank>TTCTCCGTTGGGACGGCGACAAAAGGAACCGCCCATAAAAATCCCAGTCT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAAACTAGGAATTTTCTGAAAGTTTTGTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACACCCTCCAAAATGTTCAAAGTGATCGTAAACTTGACAGCCGGGCTCCAGACTTCTGAAAATGGCCGAAAATCAACGACAGGTACTGTATGAATCTTAGAGTCTCCAGAATTTTCTAACCCTTTTTGAAACCGATAACATTTCTTAGAATTTATTTTAGACATTCTAGATGATTATAACCTGTCCTTCTGATTATCCGATTTTCGTCGTTTTCCGAATCCCGACATCACGTCTAGAGGCTTTTTCCTATTTTCTTCCACTTTTGTACTCCTCTTTCCATGTTTCCTCCGTCATCCATCATCCATTTTTTTCGGCTCCACAATCATCCCGTCAAACGGAGCCCAAACCAAAGGCACGTCTTCTTTTTTTCTTCCAGTCGATCGGACACGTCGATCTGTCAATCCACCTCATCATTATCTACCTCACAAATCGTTCCTCTTCTCCGTTGGGACGGCGACAAAAGGAACCGCCCATAAAAATCCCAGTCTTTCTTTTTCTTTTTTTTTGTTATTTGGAGGTGGGCTCTTTTTCTCCTTTTTCCTTTTCTTCTTCTTTTTCAACCGGTGCCTCCTGGAGATTTTTGTGTGTTCACTCCAAAGGTCCATGGCTCTTCCCACACATTTCTTCCCTTCTTCTTTTCTTCTTTTTTCTGTTACTCTGGTTTTTGATCGACCAAAGAGAATGGGAAGAATAGGATTAACTTTTGGAGAAAAAAGAAAATAAAGAAGGTCCAATTTTCATTTTTCAAGGTCCAAAGCTTTCTGAATTTATTACCTTGTTTGTTTCTTTGGAGTACTGTTATTTTTCGCAGGATTATAATGTTTTCGTCTGGAAATTCCAGACTAGAATACGGTAATAACAGATTTGTGGGGTTTAGAAAGGTTTAAGAAAGGTCTCTGGTAATAGAGGGGTTTTTTGAGTTTTGAATTTGCGAACTT</canonical>
            <polymorphic>TGAAAAACTAGGAATTTTCTGAAAGTTTTGTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACACCCTCCAAAATGTTCAAAGTGATCGTAAACTTGACAGCCGGGCTCCAGACTTCTGAAAATGGCCGAAAATCAACGACAGGTACTGTATGAATCTTAGAGTCTCCAGAATTTTCTAACCCTTTTTGAAACCGATAACATTTCTTAGAATTTATTTTAGACATTCTAGATGATTATAACCTGTCCTTCTGATTATCCGATTTTCGTCGTTTTCCGAATCCCGACATCACGTCTAGAGGCTTTTTCCTATTTTCTTCCACTTTTGTACTCCTCTTTCCATGTTTCCTCCGTCATCCATCATCCATTTTTTTCGGCTCCACAATCATCCCGTCAAACGGAGCCCAAACCAAAGGCACGTCTTCTTTTTTTCTTCCAGTCGATCGGACACGTCGATCTGTCAATCCACCTCATCATTATCTACCTCACAAATCGTTCCTYTTCTCCGTTGGGACGGCGACAAAAGGAACCGCCCATAAAAATCCCAGTCTTTCTTTTTCTTTTTTTTTGTTATTTGGAGGTGGGCTCTTTTTCTCCTTTTTCCTTTTCTTCTTCTTTTTCAACCGGTGCCTCCTGGAGATTTTTGTGTGTTCACTCCAAAGGTCCATGGCTCTTCCCACACATTTCTTCCCTTCTTCTTTTCTTCTTTTTTCTGTTACTCTGGTTTTTGATCGACCAAAGAGAATGGGAAGAATAGGATTAACTTTTGGAGAAAAAAGAAAATAAAGAAGGTCCAATTTTCATTTTTCAAGGTCCAAAGCTTTCTGAATTTATTACCTTGTTTGTTTCTTTGGAGTACTGTTATTTTTCGCAGGATTATAATGTTTTCGTCTGGAAATTCCAGACTAGAATACGGTAATAACAGATTTGTGGGGTTTAGAAAGGTTTAAGAAAGGTCTCTGGTAATAGAGGGGTTTTTTGAGTTTTGAATTTGCGAACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTATTTTCTTCCACTTTTGTA</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAAGACTGGGATTTTTATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCTATTTTCTTCCACTTTTGTACTCCTCTTTCCATGTTTCCTCCGTCATCCATCATCCATTTTTTTCGGCTCCACAATCATCCCGTCAAACGGAGCCCAAACCAAAGGCACGTCTTCTTTTTTTCTTCCAGTCGATCGGACACGTCGATCTGTCAATCCACCTCATCATTATCTACCTCACAAATCGTTCCTCTTCTCCGTTGGGACGGCGACAAAAGGAACCGCCCATAAAAATCCCAGTCTTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>TCCTATTTTCTTCCACTTTTGTACTCCTCTTTCCATGTTTCCTCCGTCATCCATCATCCATTTTTTTCGGCTCCACAATCATCCCGTCAAACGGAGCCCAAACCAAAGGCACGTCTTCTTTTTTTCTTCCAGTCGATCGGACACGTCGATCTGTCAATCCACCTCATCATTATCTACCTCACAAATCGTTCCTYTTCTCCGTTGGGACGGCGACAAAAGGAACCGCCCATAAAAATCCCAGTCTTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35141</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>24304</contig_pos>
        <strand></strand>
        <context>TGGGACGGCG[A/C]CAAAAGGAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTCATCATTATCTACCTCACAAATCGTTCCTCTTCTCCGTTGGGACGGCG</left_flank>
        <right_flank>CAAAAGGAACCGCCCATAAAAATCCCAGTCTTTCTTTTTCTTTTTTTTTG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAGTTTTGTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACACCCTCCAAAATGTTCAAAGTGATCGTAAACTTGACAGCCGGGCTCCAGACTTCTGAAAATGGCCGAAAATCAACGACAGGTACTGTATGAATCTTAGAGTCTCCAGAATTTTCTAACCCTTTTTGAAACCGATAACATTTCTTAGAATTTATTTTAGACATTCTAGATGATTATAACCTGTCCTTCTGATTATCCGATTTTCGTCGTTTTCCGAATCCCGACATCACGTCTAGAGGCTTTTTCCTATTTTCTTCCACTTTTGTACTCCTCTTTCCATGTTTCCTCCGTCATCCATCATCCATTTTTTTCGGCTCCACAATCATCCCGTCAAACGGAGCCCAAACCAAAGGCACGTCTTCTTTTTTTCTTCCAGTCGATCGGACACGTCGATCTGTCAATCCACCTCATCATTATCTACCTCACAAATCGTTCCTCTTCTCCGTTGGGACGGCGACAAAAGGAACCGCCCATAAAAATCCCAGTCTTTCTTTTTCTTTTTTTTTGTTATTTGGAGGTGGGCTCTTTTTCTCCTTTTTCCTTTTCTTCTTCTTTTTCAACCGGTGCCTCCTGGAGATTTTTGTGTGTTCACTCCAAAGGTCCATGGCTCTTCCCACACATTTCTTCCCTTCTTCTTTTCTTCTTTTTTCTGTTACTCTGGTTTTTGATCGACCAAAGAGAATGGGAAGAATAGGATTAACTTTTGGAGAAAAAAGAAAATAAAGAAGGTCCAATTTTCATTTTTCAAGGTCCAAAGCTTTCTGAATTTATTACCTTGTTTGTTTCTTTGGAGTACTGTTATTTTTCGCAGGATTATAATGTTTTCGTCTGGAAATTCCAGACTAGAATACGGTAATAACAGATTTGTGGGGTTTAGAAAGGTTTAAGAAAGGTCTCTGGTAATAGAGGGGTTTTTTGAGTTTTGAATTTGCGAACTTCCGAAAATCTGAGATCTTG</canonical>
            <polymorphic>TGAAAGTTTTGTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACACCCTCCAAAATGTTCAAAGTGATCGTAAACTTGACAGCCGGGCTCCAGACTTCTGAAAATGGCCGAAAATCAACGACAGGTACTGTATGAATCTTAGAGTCTCCAGAATTTTCTAACCCTTTTTGAAACCGATAACATTTCTTAGAATTTATTTTAGACATTCTAGATGATTATAACCTGTCCTTCTGATTATCCGATTTTCGTCGTTTTCCGAATCCCGACATCACGTCTAGAGGCTTTTTCCTATTTTCTTCCACTTTTGTACTCCTCTTTCCATGTTTCCTCCGTCATCCATCATCCATTTTTTTCGGCTCCACAATCATCCCGTCAAACGGAGCCCAAACCAAAGGCACGTCTTCTTTTTTTCTTCCAGTCGATCGGACACGTCGATCTGTCAATCCACCTCATCATTATCTACCTCACAAATCGTTCCTCTTCTCCGTTGGGACGGCGMCAAAAGGAACCGCCCATAAAAATCCCAGTCTTTCTTTTTCTTTTTTTTTGTTATTTGGAGGTGGGCTCTTTTTCTCCTTTTTCCTTTTCTTCTTCTTTTTCAACCGGTGCCTCCTGGAGATTTTTGTGTGTTCACTCCAAAGGTCCATGGCTCTTCCCACACATTTCTTCCCTTCTTCTTTTCTTCTTTTTTCTGTTACTCTGGTTTTTGATCGACCAAAGAGAATGGGAAGAATAGGATTAACTTTTGGAGAAAAAAGAAAATAAAGAAGGTCCAATTTTCATTTTTCAAGGTCCAAAGCTTTCTGAATTTATTACCTTGTTTGTTTCTTTGGAGTACTGTTATTTTTCGCAGGATTATAATGTTTTCGTCTGGAAATTCCAGACTAGAATACGGTAATAACAGATTTGTGGGGTTTAGAAAGGTTTAAGAAAGGTCTCTGGTAATAGAGGGGTTTTTTGAGTTTTGAATTTGCGAACTTCCGAAAATCTGAGATCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATCCACCTCATCATTATCTAC</pcr_primer_p1>
		<pcr_primer_p2>AAGAAAAGAAGAAGGGAAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAATCCACCTCATCATTATCTACCTCACAAATCGTTCCTCTTCTCCGTTGGGACGGCGACAAAAGGAACCGCCCATAAAAATCCCAGTCTTTCTTTTTCTTTTTTTTTGTTATTTGGAGGTGGGCTCTTTTTCTCCTTTTTCCTTTTCTTCTTCTTTTTCAACCGGTGCCTCCTGGAGATTTTTGTGTGTTCACTCCAAAGGTCCATGGCTCTTCCCACACATTTCTTCCCTTCTTCTTTTCTT</canonical_amplicon>
		<polymorphic_amplicon>CAATCCACCTCATCATTATCTACCTCACAAATCGTTCCTCTTCTCCGTTGGGACGGCGMCAAAAGGAACCGCCCATAAAAATCCCAGTCTTTCTTTTTCTTTTTTTTTGTTATTTGGAGGTGGGCTCTTTTTCTCCTTTTTCCTTTTCTTCTTCTTTTTCAACCGGTGCCTCCTGGAGATTTTTGTGTGTTCACTCCAAAGGTCCATGGCTCTTCCCACACATTTCTTCCCTTCTTCTTTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35142</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>24375</contig_pos>
        <strand></strand>
        <context>GTGGGCtctt[T/C]ttctcctttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATCCCAGTCTTTCTTTTTCTTTTTTTTTGTTATTTGGAGGTGGGCTCTT</left_flank>
        <right_flank>TTCTCCTTTTTCCTTTTCTTCTTCTTTTTCAACCGGTGCCTCCTGGAGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAACTTGACAGCCGGGCTCCAGACTTCTGAAAATGGCCGAAAATCAACGACAGGTACTGTATGAATCTTAGAGTCTCCAGAATTTTCTAACCCTTTTTGAAACCGATAACATTTCTTAGAATTTATTTTAGACATTCTAGATGATTATAACCTGTCCTTCTGATTATCCGATTTTCGTCGTTTTCCGAATCCCGACATCACGTCTAGAGGCTTTTTCCTATTTTCTTCCACTTTTGTACTCCTCTTTCCATGTTTCCTCCGTCATCCATCATCCATTTTTTTCGGCTCCACAATCATCCCGTCAAACGGAGCCCAAACCAAAGGCACGTCTTCTTTTTTTCTTCCAGTCGATCGGACACGTCGATCTGTCAATCCACCTCATCATTATCTACCTCACAAATCGTTCCTCTTCTCCGTTGGGACGGCGACAAAAGGAACCGCCCATAAAAATCCCAGTCTTTCTTTTTCTTTTTTTTTGTTATTTGGAGGTGGGCTCTTTTTCTCCTTTTTCCTTTTCTTCTTCTTTTTCAACCGGTGCCTCCTGGAGATTTTTGTGTGTTCACTCCAAAGGTCCATGGCTCTTCCCACACATTTCTTCCCTTCTTCTTTTCTTCTTTTTTCTGTTACTCTGGTTTTTGATCGACCAAAGAGAATGGGAAGAATAGGATTAACTTTTGGAGAAAAAAGAAAATAAAGAAGGTCCAATTTTCATTTTTCAAGGTCCAAAGCTTTCTGAATTTATTACCTTGTTTGTTTCTTTGGAGTACTGTTATTTTTCGCAGGATTATAATGTTTTCGTCTGGAAATTCCAGACTAGAATACGGTAATAACAGATTTGTGGGGTTTAGAAAGGTTTAAGAAAGGTCTCTGGTAATAGAGGGGTTTTTTGAGTTTTGAATTTGCGAACTTCCGAAAATCTGAGATCTTGAGATTCTGAGATTTTGGGACTTTGAAATTCTGAGATTCTGAGAGTTTGAGATTCTGAGACTCCGATGTTTC</canonical>
            <polymorphic>TAAACTTGACAGCCGGGCTCCAGACTTCTGAAAATGGCCGAAAATCAACGACAGGTACTGTATGAATCTTAGAGTCTCCAGAATTTTCTAACCCTTTTTGAAACCGATAACATTTCTTAGAATTTATTTTAGACATTCTAGATGATTATAACCTGTCCTTCTGATTATCCGATTTTCGTCGTTTTCCGAATCCCGACATCACGTCTAGAGGCTTTTTCCTATTTTCTTCCACTTTTGTACTCCTCTTTCCATGTTTCCTCCGTCATCCATCATCCATTTTTTTCGGCTCCACAATCATCCCGTCAAACGGAGCCCAAACCAAAGGCACGTCTTCTTTTTTTCTTCCAGTCGATCGGACACGTCGATCTGTCAATCCACCTCATCATTATCTACCTCACAAATCGTTCCTCTTCTCCGTTGGGACGGCGACAAAAGGAACCGCCCATAAAAATCCCAGTCTTTCTTTTTCTTTTTTTTTGTTATTTGGAGGTGGGCTCTTYTTCTCCTTTTTCCTTTTCTTCTTCTTTTTCAACCGGTGCCTCCTGGAGATTTTTGTGTGTTCACTCCAAAGGTCCATGGCTCTTCCCACACATTTCTTCCCTTCTTCTTTTCTTCTTTTTTCTGTTACTCTGGTTTTTGATCGACCAAAGAGAATGGGAAGAATAGGATTAACTTTTGGAGAAAAAAGAAAATAAAGAAGGTCCAATTTTCATTTTTCAAGGTCCAAAGCTTTCTGAATTTATTACCTTGTTTGTTTCTTTGGAGTACTGTTATTTTTCGCAGGATTATAATGTTTTCGTCTGGAAATTCCAGACTAGAATACGGTAATAACAGATTTGTGGGGTTTAGAAAGGTTTAAGAAAGGTCTCTGGTAATAGAGGGGTTTTTTGAGTTTTGAATTTGCGAACTTCCGAAAATCTGAGATCTTGAGATTCTGAGATTTTGGGACTTTGAAATTCTGAGATTCTGAGAGTTTGAGATTCTGAGACTCCGATGTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATCCACCTCATCATTATCTAC</pcr_primer_p1>
		<pcr_primer_p2>AAGAAAAGAAGAAGGGAAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAATCCACCTCATCATTATCTACCTCACAAATCGTTCCTCTTCTCCGTTGGGACGGCGACAAAAGGAACCGCCCATAAAAATCCCAGTCTTTCTTTTTCTTTTTTTTTGTTATTTGGAGGTGGGCTCTTTTTCTCCTTTTTCCTTTTCTTCTTCTTTTTCAACCGGTGCCTCCTGGAGATTTTTGTGTGTTCACTCCAAAGGTCCATGGCTCTTCCCACACATTTCTTCCCTTCTTCTTTTCTT</canonical_amplicon>
		<polymorphic_amplicon>CAATCCACCTCATCATTATCTACCTCACAAATCGTTCCTCTTCTCCGTTGGGACGGCGACAAAAGGAACCGCCCATAAAAATCCCAGTCTTTCTTTTTCTTTTTTTTTGTTATTTGGAGGTGGGCTCTTYTTCTCCTTTTTCCTTTTCTTCTTCTTTTTCAACCGGTGCCTCCTGGAGATTTTTGTGTGTTCACTCCAAAGGTCCATGGCTCTTCCCACACATTTCTTCCCTTCTTCTTTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35143</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>45466</contig_pos>
        <strand>+</strand>
        <context>TTTGACGTCT[C/T]CTGACACACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATATTTTCTGACTTCTTCCTTTTTTGTGACTCATCATTTTTGACGTCT</left_flank>
        <right_flank>CTGACACACAAAAGAAGTATCTTAAAACAAAAACGCCTTCCTAATCTGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATACTAAACCACCAAATTCCATGCACTCCAATTTTCGAACTTCAAAAATTGCACTTTCAAAATCTTCTACCGTAAAGCCTAGCCTTAAGAGAACCCTAACTTTCCACTTTGAGCTAAATTAGCTCGGTTCCTGTAAACGGTATAAACAAGTTGTCAACTGATAAATTATTTATTATAATATCACAAACATTTTATCAGTTGATAACTTTTTGGTATCTCCAGCAGGAACCAAGATAATTGATCTCAAAGTGAAAAGTAGAGGACCCTTCTATTACAGGTTTCACCGTGTCGCAGGGAAGGCAAAGGCGCCAGAATAATGTTAACAAAAAATTCAAAAATCCAGAAAGCTAAACTACTGAATTCCAAAAATCCAGTTTTCGAACTTTTTTTTTTAATTTAAAATTTTCAAAAACTTTAGATTGTATCCTTTTTTTTAAGTTTTAACCACCAATATTTTCTGACTTCTTCCTTTTTTGTGACTCATCATTTTTGACGTCTTCTGACACACAAAAGAAGTATCTTAAAACAAAAACGCCTTCCTAATCTGAAACCGATATGACGTCACCCAAAATTAGCCCCCCCCCCCCCCGCCCTTGAGGGGGAAAAATCCAATAGACTAAATCCTTGTATGAAAATTCGCCACTTGAGAAAAGGATATATTTCCATTCAAGGAAAGGATGCCAATGTCTAGAATTACACCCCCATATTCCAAAAAAAATGGAGCTCAGACACCAGAGAATTTTGACCTTTTGCTTTTTTTTCAACACCCACTGAAGTCATCTGGGATACCTAGCCGGGGATTAACACATCTAACTGGCTCTTCAATAGTCTATTTTTGAGAAATTGAAGAGCTTCTGGAAGAGTGGTGTGACAATTGACGTCAATACTGTGGGAGACTGAACTTTTGGTTTTAAAGAACTTGGAATTTCAAAATAATGATTTTCAGAAAAAAATCTTAGATCGGGCTCTTGTGATATAAACTGATATCCAAGTTTCCAG</canonical>
            <polymorphic>AATACTAAACCACCAAATTCCATGCACTCCAATTTTCGAACTTCAAAAATTGCACTTTCAAAATCTTCTACCGTAAAGCCTAGCCTTAAGAGAACCCTAACTTTCCACTTTGAGCTAAATTAGCTCGGTTCCTGTAAACGGTATAAACAAGTTGTCAACTGATAAATTATTTATTATAATATCACAAACATTTTATCAGTTGATAACTTTTTGGTATCTCCAGCAGGAACCAAGATAATTGATCTCAAAGTGAAAAGTAGAGGACCCTTCTATTACAGGTTTCACCGTGTCGCAGGGAAGGCAAAGGCGCCAGAATAATGTTAACAAAAAATTCAAAAATCCAGAAAGCTAAACTACTGAATTCCAAAAATCCAGTTTTCGAACTTTTTTTTTTAATTTAAAATTTTCAAAAACTTTAGATTGTATCCTTTTTTTTAAGTTTTAACCACCAATATTTTCTGACTTCTTCCTTTTTTGTGACTCATCATTTTTGACGTCTYCTGACACACAAAAGAAGTATCTTAAAACAAAAACGCCTTCCTAATCTGAAACCGATATGACGTCACCCAAAATTAGCCCCCCCCCCCCCCGCCCTTGAGGGGGAAAAATCCAATAGACTAAATCCTTGTATGAAAATTCGCCACTTGAGAAAAGGATATATTTCCATTCAAGGAAAGGATGCCAATGTCTAGAATTACACCCCCATATTCCAAAAAAAATGGAGCTCAGACACCAGAGAATTTTGACCTTTTGCTTTTTTTTCAACACCCACTGAAGTCATCTGGGATACCTAGCCGGGGATTAACACATCTAACTGGCTCTTCAATAGTCTATTTTTGAGAAATTGAAGAGCTTCTGGAAGAGTGGTGTGACAATTGACGTCAATACTGTGGGAGACTGAACTTTTGGTTTTAAAGAACTTGGAATTTCAAAATAATGATTTTCAGAAAAAAATCTTAGATCGGGCTCTTGTGATATAAACTGATATCCAAGTTTCCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>460 218 181 54 45 42</canonical_bands>
                <polymorphic_bands>460 218 181 87 54</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACCAATATTTTCTGACTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>TAATTCTAGACATTGGCATCCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CACCAATATTTTCTGACTTCTTCCTTTTTTGTGACTCATCATTTTTGACGTCTTCTGACACACAAAAGAAGTATCTTAAAACAAAAACGCCTTCCTAATCTGAAACCGATATGACGTCACCCAAAATTAGCCCCCCCCCCCCCCGCCCTTGAGGGGGAAAAATCCAATAGACTAAATCCTTGTATGAAAATTCGCCACTTGAGAAAAGGATATATTTCCATTCAAGGAAAGGATGCCAATGTCTAGAATTA</canonical_amplicon>
		<polymorphic_amplicon>CACCAATATTTTCTGACTTCTTCCTTTTTTGTGACTCATCATTTTTGACGTCTYCTGACACACAAAAGAAGTATCTTAAAACAAAAACGCCTTCCTAATCTGAAACCGATATGACGTCACCCAAAATTAGCCCCCCCCCCCCCCGCCCTTGAGGGGGAAAAATCCAATAGACTAAATCCTTGTATGAAAATTCGCCACTTGAGAAAAGGATATATTTCCATTCAAGGAAAGGATGCCAATGTCTAGAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35144</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>45480</contig_pos>
        <strand>+</strand>
        <context>ACACACAAAA[A/G]AAGTATCTYA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTTCCTTTTTTGTGACTCATCATTTTTGACGTCTTCTGACACACAAAA</left_flank>
        <right_flank>AAGTATCTTAAAACAAAAACGCCTTCCTAATCTGAAACCGATATGACGTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTCCATGCACTCCAATTTTCGAACTTCAAAAATTGCACTTTCAAAATCTTCTACCGTAAAGCCTAGCCTTAAGAGAACCCTAACTTTCCACTTTGAGCTAAATTAGCTCGGTTCCTGTAAACGGTATAAACAAGTTGTCAACTGATAAATTATTTATTATAATATCACAAACATTTTATCAGTTGATAACTTTTTGGTATCTCCAGCAGGAACCAAGATAATTGATCTCAAAGTGAAAAGTAGAGGACCCTTCTATTACAGGTTTCACCGTGTCGCAGGGAAGGCAAAGGCGCCAGAATAATGTTAACAAAAAATTCAAAAATCCAGAAAGCTAAACTACTGAATTCCAAAAATCCAGTTTTCGAACTTTTTTTTTTAATTTAAAATTTTCAAAAACTTTAGATTGTATCCTTTTTTTTAAGTTTTAACCACCAATATTTTCTGACTTCTTCCTTTTTTGTGACTCATCATTTTTGACGTCTTCTGACACACAAAAGAAGTATCTTAAAACAAAAACGCCTTCCTAATCTGAAACCGATATGACGTCACCCAAAATTAGCCCCCCCCCCCCCCGCCCTTGAGGGGGAAAAATCCAATAGACTAAATCCTTGTATGAAAATTCGCCACTTGAGAAAAGGATATATTTCCATTCAAGGAAAGGATGCCAATGTCTAGAATTACACCCCCATATTCCAAAAAAAATGGAGCTCAGACACCAGAGAATTTTGACCTTTTGCTTTTTTTTCAACACCCACTGAAGTCATCTGGGATACCTAGCCGGGGATTAACACATCTAACTGGCTCTTCAATAGTCTATTTTTGAGAAATTGAAGAGCTTCTGGAAGAGTGGTGTGACAATTGACGTCAATACTGTGGGAGACTGAACTTTTGGTTTTAAAGAACTTGGAATTTCAAAATAATGATTTTCAGAAAAAAATCTTAGATCGGGCTCTTGTGATATAAACTGATATCCAAGTTTCCAGAGAACCCCCTGAGA</canonical>
            <polymorphic>AAATTCCATGCACTCCAATTTTCGAACTTCAAAAATTGCACTTTCAAAATCTTCTACCGTAAAGCCTAGCCTTAAGAGAACCCTAACTTTCCACTTTGAGCTAAATTAGCTCGGTTCCTGTAAACGGTATAAACAAGTTGTCAACTGATAAATTATTTATTATAATATCACAAACATTTTATCAGTTGATAACTTTTTGGTATCTCCAGCAGGAACCAAGATAATTGATCTCAAAGTGAAAAGTAGAGGACCCTTCTATTACAGGTTTCACCGTGTCGCAGGGAAGGCAAAGGCGCCAGAATAATGTTAACAAAAAATTCAAAAATCCAGAAAGCTAAACTACTGAATTCCAAAAATCCAGTTTTCGAACTTTTTTTTTTAATTTAAAATTTTCAAAAACTTTAGATTGTATCCTTTTTTTTAAGTTTTAACCACCAATATTTTCTGACTTCTTCCTTTTTTGTGACTCATCATTTTTGACGTCTTCTGACACACAAAARAAGTATCTTAAAACAAAAACGCCTTCCTAATCTGAAACCGATATGACGTCACCCAAAATTAGCCCCCCCCCCCCCCGCCCTTGAGGGGGAAAAATCCAATAGACTAAATCCTTGTATGAAAATTCGCCACTTGAGAAAAGGATATATTTCCATTCAAGGAAAGGATGCCAATGTCTAGAATTACACCCCCATATTCCAAAAAAAATGGAGCTCAGACACCAGAGAATTTTGACCTTTTGCTTTTTTTTCAACACCCACTGAAGTCATCTGGGATACCTAGCCGGGGATTAACACATCTAACTGGCTCTTCAATAGTCTATTTTTGAGAAATTGAAGAGCTTCTGGAAGAGTGGTGTGACAATTGACGTCAATACTGTGGGAGACTGAACTTTTGGTTTTAAAGAACTTGGAATTTCAAAATAATGATTTTCAGAAAAAAATCTTAGATCGGGCTCTTGTGATATAAACTGATATCCAAGTTTCCAGAGAACCCCCTGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCAATATTTTCTGACTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>TAATTCTAGACATTGGCATCCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CACCAATATTTTCTGACTTCTTCCTTTTTTGTGACTCATCATTTTTGACGTCTTCTGACACACAAAAGAAGTATCTTAAAACAAAAACGCCTTCCTAATCTGAAACCGATATGACGTCACCCAAAATTAGCCCCCCCCCCCCCCGCCCTTGAGGGGGAAAAATCCAATAGACTAAATCCTTGTATGAAAATTCGCCACTTGAGAAAAGGATATATTTCCATTCAAGGAAAGGATGCCAATGTCTAGAATTA</canonical_amplicon>
		<polymorphic_amplicon>CACCAATATTTTCTGACTTCTTCCTTTTTTGTGACTCATCATTTTTGACGTCTTCTGACACACAAAARAAGTATCTTAAAACAAAAACGCCTTCCTAATCTGAAACCGATATGACGTCACCCAAAATTAGCCCCCCCCCCCCCCGCCCTTGAGGGGGAAAAATCCAATAGACTAAATCCTTGTATGAAAATTCGCCACTTGAGAAAAGGATATATTTCCATTCAAGGAAAGGATGCCAATGTCTAGAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35145</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>45489</contig_pos>
        <strand>+</strand>
        <context>ARAAGTATCT[C/T]AAAACAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGTGACTCATCATTTTTGACGTCTTCTGACACACAAAAGAAGTATCT</left_flank>
        <right_flank>AAAACAAAAACGCCTTCCTAATCTGAAACCGATATGACGTCACCCAAAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCACTCCAATTTTCGAACTTCAAAAATTGCACTTTCAAAATCTTCTACCGTAAAGCCTAGCCTTAAGAGAACCCTAACTTTCCACTTTGAGCTAAATTAGCTCGGTTCCTGTAAACGGTATAAACAAGTTGTCAACTGATAAATTATTTATTATAATATCACAAACATTTTATCAGTTGATAACTTTTTGGTATCTCCAGCAGGAACCAAGATAATTGATCTCAAAGTGAAAAGTAGAGGACCCTTCTATTACAGGTTTCACCGTGTCGCAGGGAAGGCAAAGGCGCCAGAATAATGTTAACAAAAAATTCAAAAATCCAGAAAGCTAAACTACTGAATTCCAAAAATCCAGTTTTCGAACTTTTTTTTTTAATTTAAAATTTTCAAAAACTTTAGATTGTATCCTTTTTTTTAAGTTTTAACCACCAATATTTTCTGACTTCTTCCTTTTTTGTGACTCATCATTTTTGACGTCTTCTGACACACAAAAGAAGTATCTTAAAACAAAAACGCCTTCCTAATCTGAAACCGATATGACGTCACCCAAAATTAGCCCCCCCCCCCCCCGCCCTTGAGGGGGAAAAATCCAATAGACTAAATCCTTGTATGAAAATTCGCCACTTGAGAAAAGGATATATTTCCATTCAAGGAAAGGATGCCAATGTCTAGAATTACACCCCCATATTCCAAAAAAAATGGAGCTCAGACACCAGAGAATTTTGACCTTTTGCTTTTTTTTCAACACCCACTGAAGTCATCTGGGATACCTAGCCGGGGATTAACACATCTAACTGGCTCTTCAATAGTCTATTTTTGAGAAATTGAAGAGCTTCTGGAAGAGTGGTGTGACAATTGACGTCAATACTGTGGGAGACTGAACTTTTGGTTTTAAAGAACTTGGAATTTCAAAATAATGATTTTCAGAAAAAAATCTTAGATCGGGCTCTTGTGATATAAACTGATATCCAAGTTTCCAGAGAACCCCCTGAGAGCTTAAGCT</canonical>
            <polymorphic>GCACTCCAATTTTCGAACTTCAAAAATTGCACTTTCAAAATCTTCTACCGTAAAGCCTAGCCTTAAGAGAACCCTAACTTTCCACTTTGAGCTAAATTAGCTCGGTTCCTGTAAACGGTATAAACAAGTTGTCAACTGATAAATTATTTATTATAATATCACAAACATTTTATCAGTTGATAACTTTTTGGTATCTCCAGCAGGAACCAAGATAATTGATCTCAAAGTGAAAAGTAGAGGACCCTTCTATTACAGGTTTCACCGTGTCGCAGGGAAGGCAAAGGCGCCAGAATAATGTTAACAAAAAATTCAAAAATCCAGAAAGCTAAACTACTGAATTCCAAAAATCCAGTTTTCGAACTTTTTTTTTTAATTTAAAATTTTCAAAAACTTTAGATTGTATCCTTTTTTTTAAGTTTTAACCACCAATATTTTCTGACTTCTTCCTTTTTTGTGACTCATCATTTTTGACGTCTTCTGACACACAAAAGAAGTATCTYAAAACAAAAACGCCTTCCTAATCTGAAACCGATATGACGTCACCCAAAATTAGCCCCCCCCCCCCCCGCCCTTGAGGGGGAAAAATCCAATAGACTAAATCCTTGTATGAAAATTCGCCACTTGAGAAAAGGATATATTTCCATTCAAGGAAAGGATGCCAATGTCTAGAATTACACCCCCATATTCCAAAAAAAATGGAGCTCAGACACCAGAGAATTTTGACCTTTTGCTTTTTTTTCAACACCCACTGAAGTCATCTGGGATACCTAGCCGGGGATTAACACATCTAACTGGCTCTTCAATAGTCTATTTTTGAGAAATTGAAGAGCTTCTGGAAGAGTGGTGTGACAATTGACGTCAATACTGTGGGAGACTGAACTTTTGGTTTTAAAGAACTTGGAATTTCAAAATAATGATTTTCAGAAAAAAATCTTAGATCGGGCTCTTGTGATATAAACTGATATCCAAGTTTCCAGAGAACCCCCTGAGAGCTTAAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>280 235 110 105 80 72 63 37 7 6 5</canonical_bands>
                <polymorphic_bands>360 235 110 105 72 63 37 7 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACCAATATTTTCTGACTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>TAATTCTAGACATTGGCATCCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CACCAATATTTTCTGACTTCTTCCTTTTTTGTGACTCATCATTTTTGACGTCTTCTGACACACAAAAGAAGTATCTTAAAACAAAAACGCCTTCCTAATCTGAAACCGATATGACGTCACCCAAAATTAGCCCCCCCCCCCCCCGCCCTTGAGGGGGAAAAATCCAATAGACTAAATCCTTGTATGAAAATTCGCCACTTGAGAAAAGGATATATTTCCATTCAAGGAAAGGATGCCAATGTCTAGAATTA</canonical_amplicon>
		<polymorphic_amplicon>CACCAATATTTTCTGACTTCTTCCTTTTTTGTGACTCATCATTTTTGACGTCTTCTGACACACAAAAGAAGTATCTYAAAACAAAAACGCCTTCCTAATCTGAAACCGATATGACGTCACCCAAAATTAGCCCCCCCCCCCCCCGCCCTTGAGGGGGAAAAATCCAATAGACTAAATCCTTGTATGAAAATTCGCCACTTGAGAAAAGGATATATTTCCATTCAAGGAAAGGATGCCAATGTCTAGAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35146</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>45591</contig_pos>
        <strand>+</strand>
        <context>AGACTAAATC[C/T]TTGWATGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCCCCCCCCCCCCCCGCCCTTGAGGGGGAAAAATCCAATAGACTAAATC</left_flank>
        <right_flank>TTGTATGAAAATTCGCCACTTGAGAAAAGGATATATTTCCATTCAAGGAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGTTCCTGTAAACGGTATAAACAAGTTGTCAACTGATAAATTATTTATTATAATATCACAAACATTTTATCAGTTGATAACTTTTTGGTATCTCCAGCAGGAACCAAGATAATTGATCTCAAAGTGAAAAGTAGAGGACCCTTCTATTACAGGTTTCACCGTGTCGCAGGGAAGGCAAAGGCGCCAGAATAATGTTAACAAAAAATTCAAAAATCCAGAAAGCTAAACTACTGAATTCCAAAAATCCAGTTTTCGAACTTTTTTTTTTAATTTAAAATTTTCAAAAACTTTAGATTGTATCCTTTTTTTTAAGTTTTAACCACCAATATTTTCTGACTTCTTCCTTTTTTGTGACTCATCATTTTTGACGTCTTCTGACACACAAAAGAAGTATCTTAAAACAAAAACGCCTTCCTAATCTGAAACCGATATGACGTCACCCAAAATTAGCCCCCCCCCCCCCCGCCCTTGAGGGGGAAAAATCCAATAGACTAAATCCTTGTATGAAAATTCGCCACTTGAGAAAAGGATATATTTCCATTCAAGGAAAGGATGCCAATGTCTAGAATTACACCCCCATATTCCAAAAAAAATGGAGCTCAGACACCAGAGAATTTTGACCTTTTGCTTTTTTTTCAACACCCACTGAAGTCATCTGGGATACCTAGCCGGGGATTAACACATCTAACTGGCTCTTCAATAGTCTATTTTTGAGAAATTGAAGAGCTTCTGGAAGAGTGGTGTGACAATTGACGTCAATACTGTGGGAGACTGAACTTTTGGTTTTAAAGAACTTGGAATTTCAAAATAATGATTTTCAGAAAAAAATCTTAGATCGGGCTCTTGTGATATAAACTGATATCCAAGTTTCCAGAGAACCCCCTGAGAGCTTAAGCTCATTAGCCATCTTTCCCTTCCTCCCCCACCTTGTTTTTCTCTTGCTTACTCATCCGAGCAGAAGAAAAGAGAAAATGCTAGAATATGAGATTACATCTGATG</canonical>
            <polymorphic>CGGTTCCTGTAAACGGTATAAACAAGTTGTCAACTGATAAATTATTTATTATAATATCACAAACATTTTATCAGTTGATAACTTTTTGGTATCTCCAGCAGGAACCAAGATAATTGATCTCAAAGTGAAAAGTAGAGGACCCTTCTATTACAGGTTTCACCGTGTCGCAGGGAAGGCAAAGGCGCCAGAATAATGTTAACAAAAAATTCAAAAATCCAGAAAGCTAAACTACTGAATTCCAAAAATCCAGTTTTCGAACTTTTTTTTTTAATTTAAAATTTTCAAAAACTTTAGATTGTATCCTTTTTTTTAAGTTTTAACCACCAATATTTTCTGACTTCTTCCTTTTTTGTGACTCATCATTTTTGACGTCTTCTGACACACAAAAGAAGTATCTTAAAACAAAAACGCCTTCCTAATCTGAAACCGATATGACGTCACCCAAAATTAGCCCCCCCCCCCCCCGCCCTTGAGGGGGAAAAATCCAATAGACTAAATCYTTGTATGAAAATTCGCCACTTGAGAAAAGGATATATTTCCATTCAAGGAAAGGATGCCAATGTCTAGAATTACACCCCCATATTCCAAAAAAAATGGAGCTCAGACACCAGAGAATTTTGACCTTTTGCTTTTTTTTCAACACCCACTGAAGTCATCTGGGATACCTAGCCGGGGATTAACACATCTAACTGGCTCTTCAATAGTCTATTTTTGAGAAATTGAAGAGCTTCTGGAAGAGTGGTGTGACAATTGACGTCAATACTGTGGGAGACTGAACTTTTGGTTTTAAAGAACTTGGAATTTCAAAATAATGATTTTCAGAAAAAAATCTTAGATCGGGCTCTTGTGATATAAACTGATATCCAAGTTTCCAGAGAACCCCCTGAGAGCTTAAGCTCATTAGCCATCTTTCCCTTCCTCCCCCACCTTGTTTTTCTCTTGCTTACTCATCCGAGCAGAAGAAAAGAGAAAATGCTAGAATATGAGATTACATCTGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCAATATTTTCTGACTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>TAATTCTAGACATTGGCATCCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CACCAATATTTTCTGACTTCTTCCTTTTTTGTGACTCATCATTTTTGACGTCTTCTGACACACAAAAGAAGTATCTTAAAACAAAAACGCCTTCCTAATCTGAAACCGATATGACGTCACCCAAAATTAGCCCCCCCCCCCCCCGCCCTTGAGGGGGAAAAATCCAATAGACTAAATCCTTGTATGAAAATTCGCCACTTGAGAAAAGGATATATTTCCATTCAAGGAAAGGATGCCAATGTCTAGAATTA</canonical_amplicon>
		<polymorphic_amplicon>CACCAATATTTTCTGACTTCTTCCTTTTTTGTGACTCATCATTTTTGACGTCTTCTGACACACAAAAGAAGTATCTTAAAACAAAAACGCCTTCCTAATCTGAAACCGATATGACGTCACCCAAAATTAGCCCCCCCCCCCCCCGCCCTTGAGGGGGAAAAATCCAATAGACTAAATCYTTGTATGAAAATTCGCCACTTGAGAAAAGGATATATTTCCATTCAAGGAAAGGATGCCAATGTCTAGAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35147</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>45595</contig_pos>
        <strand>+</strand>
        <context>TAAATCYTTG[A/T]ATGAAAATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCCCCCCCCCCCGCCCTTGAGGGGGAAAAATCCAATAGACTAAATCCTTG</left_flank>
        <right_flank>ATGAAAATTCGCCACTTGAGAAAAGGATATATTTCCATTCAAGGAAAGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTGTAAACGGTATAAACAAGTTGTCAACTGATAAATTATTTATTATAATATCACAAACATTTTATCAGTTGATAACTTTTTGGTATCTCCAGCAGGAACCAAGATAATTGATCTCAAAGTGAAAAGTAGAGGACCCTTCTATTACAGGTTTCACCGTGTCGCAGGGAAGGCAAAGGCGCCAGAATAATGTTAACAAAAAATTCAAAAATCCAGAAAGCTAAACTACTGAATTCCAAAAATCCAGTTTTCGAACTTTTTTTTTTAATTTAAAATTTTCAAAAACTTTAGATTGTATCCTTTTTTTTAAGTTTTAACCACCAATATTTTCTGACTTCTTCCTTTTTTGTGACTCATCATTTTTGACGTCTTCTGACACACAAAAGAAGTATCTTAAAACAAAAACGCCTTCCTAATCTGAAACCGATATGACGTCACCCAAAATTAGCCCCCCCCCCCCCCGCCCTTGAGGGGGAAAAATCCAATAGACTAAATCCTTGTATGAAAATTCGCCACTTGAGAAAAGGATATATTTCCATTCAAGGAAAGGATGCCAATGTCTAGAATTACACCCCCATATTCCAAAAAAAATGGAGCTCAGACACCAGAGAATTTTGACCTTTTGCTTTTTTTTCAACACCCACTGAAGTCATCTGGGATACCTAGCCGGGGATTAACACATCTAACTGGCTCTTCAATAGTCTATTTTTGAGAAATTGAAGAGCTTCTGGAAGAGTGGTGTGACAATTGACGTCAATACTGTGGGAGACTGAACTTTTGGTTTTAAAGAACTTGGAATTTCAAAATAATGATTTTCAGAAAAAAATCTTAGATCGGGCTCTTGTGATATAAACTGATATCCAAGTTTCCAGAGAACCCCCTGAGAGCTTAAGCTCATTAGCCATCTTTCCCTTCCTCCCCCACCTTGTTTTTCTCTTGCTTACTCATCCGAGCAGAAGAAAAGAGAAAATGCTAGAATATGAGATTACATCTGATGACCT</canonical>
            <polymorphic>TCCTGTAAACGGTATAAACAAGTTGTCAACTGATAAATTATTTATTATAATATCACAAACATTTTATCAGTTGATAACTTTTTGGTATCTCCAGCAGGAACCAAGATAATTGATCTCAAAGTGAAAAGTAGAGGACCCTTCTATTACAGGTTTCACCGTGTCGCAGGGAAGGCAAAGGCGCCAGAATAATGTTAACAAAAAATTCAAAAATCCAGAAAGCTAAACTACTGAATTCCAAAAATCCAGTTTTCGAACTTTTTTTTTTAATTTAAAATTTTCAAAAACTTTAGATTGTATCCTTTTTTTTAAGTTTTAACCACCAATATTTTCTGACTTCTTCCTTTTTTGTGACTCATCATTTTTGACGTCTTCTGACACACAAAAGAAGTATCTTAAAACAAAAACGCCTTCCTAATCTGAAACCGATATGACGTCACCCAAAATTAGCCCCCCCCCCCCCCGCCCTTGAGGGGGAAAAATCCAATAGACTAAATCCTTGWATGAAAATTCGCCACTTGAGAAAAGGATATATTTCCATTCAAGGAAAGGATGCCAATGTCTAGAATTACACCCCCATATTCCAAAAAAAATGGAGCTCAGACACCAGAGAATTTTGACCTTTTGCTTTTTTTTCAACACCCACTGAAGTCATCTGGGATACCTAGCCGGGGATTAACACATCTAACTGGCTCTTCAATAGTCTATTTTTGAGAAATTGAAGAGCTTCTGGAAGAGTGGTGTGACAATTGACGTCAATACTGTGGGAGACTGAACTTTTGGTTTTAAAGAACTTGGAATTTCAAAATAATGATTTTCAGAAAAAAATCTTAGATCGGGCTCTTGTGATATAAACTGATATCCAAGTTTCCAGAGAACCCCCTGAGAGCTTAAGCTCATTAGCCATCTTTCCCTTCCTCCCCCACCTTGTTTTTCTCTTGCTTACTCATCCGAGCAGAAGAAAAGAGAAAATGCTAGAATATGAGATTACATCTGATGACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCAATATTTTCTGACTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>TAATTCTAGACATTGGCATCCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CACCAATATTTTCTGACTTCTTCCTTTTTTGTGACTCATCATTTTTGACGTCTTCTGACACACAAAAGAAGTATCTTAAAACAAAAACGCCTTCCTAATCTGAAACCGATATGACGTCACCCAAAATTAGCCCCCCCCCCCCCCGCCCTTGAGGGGGAAAAATCCAATAGACTAAATCCTTGTATGAAAATTCGCCACTTGAGAAAAGGATATATTTCCATTCAAGGAAAGGATGCCAATGTCTAGAATTA</canonical_amplicon>
		<polymorphic_amplicon>CACCAATATTTTCTGACTTCTTCCTTTTTTGTGACTCATCATTTTTGACGTCTTCTGACACACAAAAGAAGTATCTTAAAACAAAAACGCCTTCCTAATCTGAAACCGATATGACGTCACCCAAAATTAGCCCCCCCCCCCCCCGCCCTTGAGGGGGAAAAATCCAATAGACTAAATCCTTGWATGAAAATTCGCCACTTGAGAAAAGGATATATTTCCATTCAAGGAAAGGATGCCAATGTCTAGAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35148</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>45678</contig_pos>
        <strand>+</strand>
        <context>CCCATATTCC[G/T]AAAAAAATGG</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCCATTCAAGGAAAGGATGCCAATGTCTAGAATTACACCCCCATATTCC</left_flank>
        <right_flank>AAAAAAATGGAGCTCAGACACCAGAGAATTTTGACCTTTTGCTTTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTATCTCCAGCAGGAACCAAGATAATTGATCTCAAAGTGAAAAGTAGAGGACCCTTCTATTACAGGTTTCACCGTGTCGCAGGGAAGGCAAAGGCGCCAGAATAATGTTAACAAAAAATTCAAAAATCCAGAAAGCTAAACTACTGAATTCCAAAAATCCAGTTTTCGAACTTTTTTTTTTAATTTAAAATTTTCAAAAACTTTAGATTGTATCCTTTTTTTTAAGTTTTAACCACCAATATTTTCTGACTTCTTCCTTTTTTGTGACTCATCATTTTTGACGTCTTCTGACACACAAAAGAAGTATCTTAAAACAAAAACGCCTTCCTAATCTGAAACCGATATGACGTCACCCAAAATTAGCCCCCCCCCCCCCCGCCCTTGAGGGGGAAAAATCCAATAGACTAAATCCTTGTATGAAAATTCGCCACTTGAGAAAAGGATATATTTCCATTCAAGGAAAGGATGCCAATGTCTAGAATTACACCCCCATATTCCAAAAAAAATGGAGCTCAGACACCAGAGAATTTTGACCTTTTGCTTTTTTTTCAACACCCACTGAAGTCATCTGGGATACCTAGCCGGGGATTAACACATCTAACTGGCTCTTCAATAGTCTATTTTTGAGAAATTGAAGAGCTTCTGGAAGAGTGGTGTGACAATTGACGTCAATACTGTGGGAGACTGAACTTTTGGTTTTAAAGAACTTGGAATTTCAAAATAATGATTTTCAGAAAAAAATCTTAGATCGGGCTCTTGTGATATAAACTGATATCCAAGTTTCCAGAGAACCCCCTGAGAGCTTAAGCTCATTAGCCATCTTTCCCTTCCTCCCCCACCTTGTTTTTCTCTTGCTTACTCATCCGAGCAGAAGAAAAGAGAAAATGCTAGAATATGAGATTACATCTGATGACCTTTGAAATTAATTCCAGATCACCACCCTCTATGAAATCGGACAATCTGTCGAAGGACGCTCTTTGGTTGTCATCCAATTCTCAA</canonical>
            <polymorphic>GGTATCTCCAGCAGGAACCAAGATAATTGATCTCAAAGTGAAAAGTAGAGGACCCTTCTATTACAGGTTTCACCGTGTCGCAGGGAAGGCAAAGGCGCCAGAATAATGTTAACAAAAAATTCAAAAATCCAGAAAGCTAAACTACTGAATTCCAAAAATCCAGTTTTCGAACTTTTTTTTTTAATTTAAAATTTTCAAAAACTTTAGATTGTATCCTTTTTTTTAAGTTTTAACCACCAATATTTTCTGACTTCTTCCTTTTTTGTGACTCATCATTTTTGACGTCTTCTGACACACAAAAGAAGTATCTTAAAACAAAAACGCCTTCCTAATCTGAAACCGATATGACGTCACCCAAAATTAGCCCCCCCCCCCCCCGCCCTTGAGGGGGAAAAATCCAATAGACTAAATCCTTGTATGAAAATTCGCCACTTGAGAAAAGGATATATTTCCATTCAAGGAAAGGATGCCAATGTCTAGAATTACACCCCCATATTCCKAAAAAAATGGAGCTCAGACACCAGAGAATTTTGACCTTTTGCTTTTTTTTCAACACCCACTGAAGTCATCTGGGATACCTAGCCGGGGATTAACACATCTAACTGGCTCTTCAATAGTCTATTTTTGAGAAATTGAAGAGCTTCTGGAAGAGTGGTGTGACAATTGACGTCAATACTGTGGGAGACTGAACTTTTGGTTTTAAAGAACTTGGAATTTCAAAATAATGATTTTCAGAAAAAAATCTTAGATCGGGCTCTTGTGATATAAACTGATATCCAAGTTTCCAGAGAACCCCCTGAGAGCTTAAGCTCATTAGCCATCTTTCCCTTCCTCCCCCACCTTGTTTTTCTCTTGCTTACTCATCCGAGCAGAAGAAAAGAGAAAATGCTAGAATATGAGATTACATCTGATGACCTTTGAAATTAATTCCAGATCACCACCCTCTATGAAATCGGACAATCTGTCGAAGGACGCTCTTTGGTTGTCATCCAATTCTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTAATCTGAAACCGATATGAC</pcr_primer_p1>
		<pcr_primer_p2>GTATCCCAGATGACTTCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCTAATCTGAAACCGATATGACGTCACCCAAAATTAGCCCCCCCCCCCCCCGCCCTTGAGGGGGAAAAATCCAATAGACTAAATCCTTGTATGAAAATTCGCCACTTGAGAAAAGGATATATTTCCATTCAAGGAAAGGATGCCAATGTCTAGAATTACACCCCCATATTCCAAAAAAAATGGAGCTCAGACACCAGAGAATTTTGACCTTTTGCTTTTTTTTCAACACCCACTGAAGTCATCTGGGATAC</canonical_amplicon>
		<polymorphic_amplicon>CCTAATCTGAAACCGATATGACGTCACCCAAAATTAGCCCCCCCCCCCCCCGCCCTTGAGGGGGAAAAATCCAATAGACTAAATCCTTGTATGAAAATTCGCCACTTGAGAAAAGGATATATTTCCATTCAAGGAAAGGATGCCAATGTCTAGAATTACACCCCCATATTCCKAAAAAAATGGAGCTCAGACACCAGAGAATTTTGACCTTTTGCTTTTTTTTCAACACCCACTGAAGTCATCTGGGATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35149</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>45711</contig_pos>
        <strand></strand>
        <context>AGAGAATTTT[G/T]ACCWTTTGCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTACACCCCCATATTCCAAAAAAAATGGAGCTCAGACACCAGAGAATTTT</left_flank>
        <right_flank>ACCTTTTGCTTTTTTTTCAACACCCACTGAAGTCATCTGGGATACCTAGC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAGTGAAAAGTAGAGGACCCTTCTATTACAGGTTTCACCGTGTCGCAGGGAAGGCAAAGGCGCCAGAATAATGTTAACAAAAAATTCAAAAATCCAGAAAGCTAAACTACTGAATTCCAAAAATCCAGTTTTCGAACTTTTTTTTTTAATTTAAAATTTTCAAAAACTTTAGATTGTATCCTTTTTTTTAAGTTTTAACCACCAATATTTTCTGACTTCTTCCTTTTTTGTGACTCATCATTTTTGACGTCTTCTGACACACAAAAGAAGTATCTTAAAACAAAAACGCCTTCCTAATCTGAAACCGATATGACGTCACCCAAAATTAGCCCCCCCCCCCCCCGCCCTTGAGGGGGAAAAATCCAATAGACTAAATCCTTGTATGAAAATTCGCCACTTGAGAAAAGGATATATTTCCATTCAAGGAAAGGATGCCAATGTCTAGAATTACACCCCCATATTCCAAAAAAAATGGAGCTCAGACACCAGAGAATTTTGACCTTTTGCTTTTTTTTCAACACCCACTGAAGTCATCTGGGATACCTAGCCGGGGATTAACACATCTAACTGGCTCTTCAATAGTCTATTTTTGAGAAATTGAAGAGCTTCTGGAAGAGTGGTGTGACAATTGACGTCAATACTGTGGGAGACTGAACTTTTGGTTTTAAAGAACTTGGAATTTCAAAATAATGATTTTCAGAAAAAAATCTTAGATCGGGCTCTTGTGATATAAACTGATATCCAAGTTTCCAGAGAACCCCCTGAGAGCTTAAGCTCATTAGCCATCTTTCCCTTCCTCCCCCACCTTGTTTTTCTCTTGCTTACTCATCCGAGCAGAAGAAAAGAGAAAATGCTAGAATATGAGATTACATCTGATGACCTTTGAAATTAATTCCAGATCACCACCCTCTATGAAATCGGACAATCTGTCGAAGGACGCTCTTTGGTTGTCATCCAATTCTCAACCACCCCCGGAGAGCATGTCCCAACGAAGCCAG</canonical>
            <polymorphic>CAAAGTGAAAAGTAGAGGACCCTTCTATTACAGGTTTCACCGTGTCGCAGGGAAGGCAAAGGCGCCAGAATAATGTTAACAAAAAATTCAAAAATCCAGAAAGCTAAACTACTGAATTCCAAAAATCCAGTTTTCGAACTTTTTTTTTTAATTTAAAATTTTCAAAAACTTTAGATTGTATCCTTTTTTTTAAGTTTTAACCACCAATATTTTCTGACTTCTTCCTTTTTTGTGACTCATCATTTTTGACGTCTTCTGACACACAAAAGAAGTATCTTAAAACAAAAACGCCTTCCTAATCTGAAACCGATATGACGTCACCCAAAATTAGCCCCCCCCCCCCCCGCCCTTGAGGGGGAAAAATCCAATAGACTAAATCCTTGTATGAAAATTCGCCACTTGAGAAAAGGATATATTTCCATTCAAGGAAAGGATGCCAATGTCTAGAATTACACCCCCATATTCCAAAAAAAATGGAGCTCAGACACCAGAGAATTTTKACCTTTTGCTTTTTTTTCAACACCCACTGAAGTCATCTGGGATACCTAGCCGGGGATTAACACATCTAACTGGCTCTTCAATAGTCTATTTTTGAGAAATTGAAGAGCTTCTGGAAGAGTGGTGTGACAATTGACGTCAATACTGTGGGAGACTGAACTTTTGGTTTTAAAGAACTTGGAATTTCAAAATAATGATTTTCAGAAAAAAATCTTAGATCGGGCTCTTGTGATATAAACTGATATCCAAGTTTCCAGAGAACCCCCTGAGAGCTTAAGCTCATTAGCCATCTTTCCCTTCCTCCCCCACCTTGTTTTTCTCTTGCTTACTCATCCGAGCAGAAGAAAAGAGAAAATGCTAGAATATGAGATTACATCTGATGACCTTTGAAATTAATTCCAGATCACCACCCTCTATGAAATCGGACAATCTGTCGAAGGACGCTCTTTGGTTGTCATCCAATTCTCAACCACCCCCGGAGAGCATGTCCCAACGAAGCCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTAGAATTACACCCCCATATT</pcr_primer_p1>
		<pcr_primer_p2>TTATTTTGAAATTCCAAGTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTCTAGAATTACACCCCCATATTCCAAAAAAAATGGAGCTCAGACACCAGAGAATTTTGACCTTTTGCTTTTTTTTCAACACCCACTGAAGTCATCTGGGATACCTAGCCGGGGATTAACACATCTAACTGGCTCTTCAATAGTCTATTTTTGAGAAATTGAAGAGCTTCTGGAAGAGTGGTGTGACAATTGACGTCAATACTGTGGGAGACTGAACTTTTGGTTTTAAAGAACTTGGAATTTCAAAATAA</canonical_amplicon>
		<polymorphic_amplicon>GTCTAGAATTACACCCCCATATTCCAAAAAAAATGGAGCTCAGACACCAGAGAATTTTKACCTTTTGCTTTTTTTTCAACACCCACTGAAGTCATCTGGGATACCTAGCCGGGGATTAACACATCTAACTGGCTCTTCAATAGTCTATTTTTGAGAAATTGAAGAGCTTCTGGAAGAGTGGTGTGACAATTGACGTCAATACTGTGGGAGACTGAACTTTTGGTTTTAAAGAACTTGGAATTTCAAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35150</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>45715</contig_pos>
        <strand>+</strand>
        <context>AATTTTKACC[A/T]TTTGCTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCCCCATATTCCAAAAAAAATGGAGCTCAGACACCAGAGAATTTTGACC</left_flank>
        <right_flank>TTTGCTTTTTTTTCAACACCCACTGAAGTCATCTGGGATACCTAGCCGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGAAAAGTAGAGGACCCTTCTATTACAGGTTTCACCGTGTCGCAGGGAAGGCAAAGGCGCCAGAATAATGTTAACAAAAAATTCAAAAATCCAGAAAGCTAAACTACTGAATTCCAAAAATCCAGTTTTCGAACTTTTTTTTTTAATTTAAAATTTTCAAAAACTTTAGATTGTATCCTTTTTTTTAAGTTTTAACCACCAATATTTTCTGACTTCTTCCTTTTTTGTGACTCATCATTTTTGACGTCTTCTGACACACAAAAGAAGTATCTTAAAACAAAAACGCCTTCCTAATCTGAAACCGATATGACGTCACCCAAAATTAGCCCCCCCCCCCCCCGCCCTTGAGGGGGAAAAATCCAATAGACTAAATCCTTGTATGAAAATTCGCCACTTGAGAAAAGGATATATTTCCATTCAAGGAAAGGATGCCAATGTCTAGAATTACACCCCCATATTCCAAAAAAAATGGAGCTCAGACACCAGAGAATTTTGACCTTTTGCTTTTTTTTCAACACCCACTGAAGTCATCTGGGATACCTAGCCGGGGATTAACACATCTAACTGGCTCTTCAATAGTCTATTTTTGAGAAATTGAAGAGCTTCTGGAAGAGTGGTGTGACAATTGACGTCAATACTGTGGGAGACTGAACTTTTGGTTTTAAAGAACTTGGAATTTCAAAATAATGATTTTCAGAAAAAAATCTTAGATCGGGCTCTTGTGATATAAACTGATATCCAAGTTTCCAGAGAACCCCCTGAGAGCTTAAGCTCATTAGCCATCTTTCCCTTCCTCCCCCACCTTGTTTTTCTCTTGCTTACTCATCCGAGCAGAAGAAAAGAGAAAATGCTAGAATATGAGATTACATCTGATGACCTTTGAAATTAATTCCAGATCACCACCCTCTATGAAATCGGACAATCTGTCGAAGGACGCTCTTTGGTTGTCATCCAATTCTCAACCACCCCCGGAGAGCATGTCCCAACGAAGCCAGAAGT</canonical>
            <polymorphic>GTGAAAAGTAGAGGACCCTTCTATTACAGGTTTCACCGTGTCGCAGGGAAGGCAAAGGCGCCAGAATAATGTTAACAAAAAATTCAAAAATCCAGAAAGCTAAACTACTGAATTCCAAAAATCCAGTTTTCGAACTTTTTTTTTTAATTTAAAATTTTCAAAAACTTTAGATTGTATCCTTTTTTTTAAGTTTTAACCACCAATATTTTCTGACTTCTTCCTTTTTTGTGACTCATCATTTTTGACGTCTTCTGACACACAAAAGAAGTATCTTAAAACAAAAACGCCTTCCTAATCTGAAACCGATATGACGTCACCCAAAATTAGCCCCCCCCCCCCCCGCCCTTGAGGGGGAAAAATCCAATAGACTAAATCCTTGTATGAAAATTCGCCACTTGAGAAAAGGATATATTTCCATTCAAGGAAAGGATGCCAATGTCTAGAATTACACCCCCATATTCCAAAAAAAATGGAGCTCAGACACCAGAGAATTTTGACCWTTTGCTTTTTTTTCAACACCCACTGAAGTCATCTGGGATACCTAGCCGGGGATTAACACATCTAACTGGCTCTTCAATAGTCTATTTTTGAGAAATTGAAGAGCTTCTGGAAGAGTGGTGTGACAATTGACGTCAATACTGTGGGAGACTGAACTTTTGGTTTTAAAGAACTTGGAATTTCAAAATAATGATTTTCAGAAAAAAATCTTAGATCGGGCTCTTGTGATATAAACTGATATCCAAGTTTCCAGAGAACCCCCTGAGAGCTTAAGCTCATTAGCCATCTTTCCCTTCCTCCCCCACCTTGTTTTTCTCTTGCTTACTCATCCGAGCAGAAGAAAAGAGAAAATGCTAGAATATGAGATTACATCTGATGACCTTTGAAATTAATTCCAGATCACCACCCTCTATGAAATCGGACAATCTGTCGAAGGACGCTCTTTGGTTGTCATCCAATTCTCAACCACCCCCGGAGAGCATGTCCCAACGAAGCCAGAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTAGAATTACACCCCCATATT</pcr_primer_p1>
		<pcr_primer_p2>TTATTTTGAAATTCCAAGTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTCTAGAATTACACCCCCATATTCCAAAAAAAATGGAGCTCAGACACCAGAGAATTTTGACCTTTTGCTTTTTTTTCAACACCCACTGAAGTCATCTGGGATACCTAGCCGGGGATTAACACATCTAACTGGCTCTTCAATAGTCTATTTTTGAGAAATTGAAGAGCTTCTGGAAGAGTGGTGTGACAATTGACGTCAATACTGTGGGAGACTGAACTTTTGGTTTTAAAGAACTTGGAATTTCAAAATAA</canonical_amplicon>
		<polymorphic_amplicon>GTCTAGAATTACACCCCCATATTCCAAAAAAAATGGAGCTCAGACACCAGAGAATTTTGACCWTTTGCTTTTTTTTCAACACCCACTGAAGTCATCTGGGATACCTAGCCGGGGATTAACACATCTAACTGGCTCTTCAATAGTCTATTTTTGAGAAATTGAAGAGCTTCTGGAAGAGTGGTGTGACAATTGACGTCAATACTGTGGGAGACTGAACTTTTGGTTTTAAAGAACTTGGAATTTCAAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35151</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>45759</contig_pos>
        <strand></strand>
        <context>TGGGATACCT[A/T]GCCGGGGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGACCTTTTGCTTTTTTTTCAACACCCACTGAAGTCATCTGGGATACCT</left_flank>
        <right_flank>GCCGGGGATTAACACATCTAACTGGCTCTTCAATAGTCTATTTTTGAGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGGAAGGCAAAGGCGCCAGAATAATGTTAACAAAAAATTCAAAAATCCAGAAAGCTAAACTACTGAATTCCAAAAATCCAGTTTTCGAACTTTTTTTTTTAATTTAAAATTTTCAAAAACTTTAGATTGTATCCTTTTTTTTAAGTTTTAACCACCAATATTTTCTGACTTCTTCCTTTTTTGTGACTCATCATTTTTGACGTCTTCTGACACACAAAAGAAGTATCTTAAAACAAAAACGCCTTCCTAATCTGAAACCGATATGACGTCACCCAAAATTAGCCCCCCCCCCCCCCGCCCTTGAGGGGGAAAAATCCAATAGACTAAATCCTTGTATGAAAATTCGCCACTTGAGAAAAGGATATATTTCCATTCAAGGAAAGGATGCCAATGTCTAGAATTACACCCCCATATTCCAAAAAAAATGGAGCTCAGACACCAGAGAATTTTGACCTTTTGCTTTTTTTTCAACACCCACTGAAGTCATCTGGGATACCTAGCCGGGGATTAACACATCTAACTGGCTCTTCAATAGTCTATTTTTGAGAAATTGAAGAGCTTCTGGAAGAGTGGTGTGACAATTGACGTCAATACTGTGGGAGACTGAACTTTTGGTTTTAAAGAACTTGGAATTTCAAAATAATGATTTTCAGAAAAAAATCTTAGATCGGGCTCTTGTGATATAAACTGATATCCAAGTTTCCAGAGAACCCCCTGAGAGCTTAAGCTCATTAGCCATCTTTCCCTTCCTCCCCCACCTTGTTTTTCTCTTGCTTACTCATCCGAGCAGAAGAAAAGAGAAAATGCTAGAATATGAGATTACATCTGATGACCTTTGAAATTAATTCCAGATCACCACCCTCTATGAAATCGGACAATCTGTCGAAGGACGCTCTTTGGTTGTCATCCAATTCTCAACCACCCCCGGAGAGCATGTCCCAACGAAGCCAGAAGTCAAGTTGATTGGAAACATGCATGGAAACGAGCCGATCGGACGCG</canonical>
            <polymorphic>AGGGAAGGCAAAGGCGCCAGAATAATGTTAACAAAAAATTCAAAAATCCAGAAAGCTAAACTACTGAATTCCAAAAATCCAGTTTTCGAACTTTTTTTTTTAATTTAAAATTTTCAAAAACTTTAGATTGTATCCTTTTTTTTAAGTTTTAACCACCAATATTTTCTGACTTCTTCCTTTTTTGTGACTCATCATTTTTGACGTCTTCTGACACACAAAAGAAGTATCTTAAAACAAAAACGCCTTCCTAATCTGAAACCGATATGACGTCACCCAAAATTAGCCCCCCCCCCCCCCGCCCTTGAGGGGGAAAAATCCAATAGACTAAATCCTTGTATGAAAATTCGCCACTTGAGAAAAGGATATATTTCCATTCAAGGAAAGGATGCCAATGTCTAGAATTACACCCCCATATTCCAAAAAAAATGGAGCTCAGACACCAGAGAATTTTGACCTTTTGCTTTTTTTTCAACACCCACTGAAGTCATCTGGGATACCTWGCCGGGGATTAACACATCTAACTGGCTCTTCAATAGTCTATTTTTGAGAAATTGAAGAGCTTCTGGAAGAGTGGTGTGACAATTGACGTCAATACTGTGGGAGACTGAACTTTTGGTTTTAAAGAACTTGGAATTTCAAAATAATGATTTTCAGAAAAAAATCTTAGATCGGGCTCTTGTGATATAAACTGATATCCAAGTTTCCAGAGAACCCCCTGAGAGCTTAAGCTCATTAGCCATCTTTCCCTTCCTCCCCCACCTTGTTTTTCTCTTGCTTACTCATCCGAGCAGAAGAAAAGAGAAAATGCTAGAATATGAGATTACATCTGATGACCTTTGAAATTAATTCCAGATCACCACCCTCTATGAAATCGGACAATCTGTCGAAGGACGCTCTTTGGTTGTCATCCAATTCTCAACCACCCCCGGAGAGCATGTCCCAACGAAGCCAGAAGTCAAGTTGATTGGAAACATGCATGGAAACGAGCCGATCGGACGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>396 310 192 102</canonical_bands>
                <polymorphic_bands>412 396 192</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>228 212 148 114 70 55 49 39 34 24 13 8 6</canonical_bands>
                <polymorphic_bands>228 212 148 114 94 55 49 39 34 13 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTAGAATTACACCCCCATATT</pcr_primer_p1>
		<pcr_primer_p2>TTATTTTGAAATTCCAAGTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GTCTAGAATTACACCCCCATATTCCAAAAAAAATGGAGCTCAGACACCAGAGAATTTTGACCTTTTGCTTTTTTTTCAACACCCACTGAAGTCATCTGGGATACCTAGCCGGGGATTAACACATCTAACTGGCTCTTCAATAGTCTATTTTTGAGAAATTGAAGAGCTTCTGGAAGAGTGGTGTGACAATTGACGTCAATACTGTGGGAGACTGAACTTTTGGTTTTAAAGAACTTGGAATTTCAAAATAA</canonical_amplicon>
		<polymorphic_amplicon>GTCTAGAATTACACCCCCATATTCCAAAAAAAATGGAGCTCAGACACCAGAGAATTTTGACCTTTTGCTTTTTTTTCAACACCCACTGAAGTCATCTGGGATACCTWGCCGGGGATTAACACATCTAACTGGCTCTTCAATAGTCTATTTTTGAGAAATTGAAGAGCTTCTGGAAGAGTGGTGTGACAATTGACGTCAATACTGTGGGAGACTGAACTTTTGGTTTTAAAGAACTTGGAATTTCAAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35152</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>125256</contig_pos>
        <strand>+</strand>
        <context>TTCTGGACTA[A/G]GGTCAGGTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCACTTTTTGGTGGCCTGACTTTTTTCTTGCTCCAGAATCTTCTGGACTA</left_flank>
        <right_flank>GGTCAGGTGTTCCTGGGACACGCCAACTGGCTCTATGTGTCAATTTTGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCGCCTCTATCTCTCAATGACCCTTTTTTATTGCGCATAATACCGTATTCCGCTGGTTTTATAGGCGAGAGTTTCACGTGAAACGTGATAGTTTTCTGATGCCTATACCGTATATTTTTTCTTTCCCTTTTTTCAAAGAAAGGATAGAAGATTAGGTGATCGGATCATTTTCTGAACTTCCACTTGTAGGAGACGGTTTTGGTCATTAAGGACACGAATGGAACGGGTTTTAAGGTGATATCATGTTTTGATAGGAAATTAGAACTCTATTGGTAAGCCTAGGTTACTGTACCCCGTGGGTACTGTAGACGCACAGTCTCATCAAGAGCTTCAACTAGAATATGAGCATCTAGGGTGTTACTATAACTCGAAAATCACTGCTCCAAAGAACACGCACCCCCAATTGAGCCTCTCTCTCCCGCTTCTTTTTTTCGAAAACAAACCCCGCCCACTTTTTGGTGGCCTGACTTTTTTCTTGCTCCAGAATCTTCTGGACTAGGGTCAGGTGTTCCTGGGACACGCCAACTGGCTCTATGTGTCAATTTTGCGACATCCACCTCGAAAATATTTTTGGATCAAAGTTGAGATTGAAGAGCTAGATTGGATGCACGTGAAGTCAATTTTTCAGAACGAGAAGGGGGAGAGGGGAAGCCCTGTGTGAAGTACCAGATGGCACAAAACACATGTGGCCGAGTTACAGCTGGCCTAAGAAAATCGGGTCACGAATTACGAGTGTTCAGTTGAACATTTTCTGTGAAGTCGGATCAGGTCTAAATATGGTTATTTACGATGGCCTAGGTTTCATTGGTGTGGCCTAGAAATTTGTAGCGAGCTCCTAAAAATCTTAGCTCCGCCGGCAACCAAAATTGGTTCATTTGGAGCAGATGCTGAGAAATTTCAAGCTTTGTGGTTTGAGAATATCCGGTCTAGATTGAAGCCAAGATCTGAAGACCCTTCAAATCTGGTGCAAGTTTTATAATAAAGCGAATTTCTTGGAAA</canonical>
            <polymorphic>GGCGCCTCTATCTCTCAATGACCCTTTTTTATTGCGCATAATACCGTATTCCGCTGGTTTTATAGGCGAGAGTTTCACGTGAAACGTGATAGTTTTCTGATGCCTATACCGTATATTTTTTCTTTCCCTTTTTTCAAAGAAAGGATAGAAGATTAGGTGATCGGATCATTTTCTGAACTTCCACTTGTAGGAGACGGTTTTGGTCATTAAGGACACGAATGGAACGGGTTTTAAGGTGATATCATGTTTTGATAGGAAATTAGAACTCTATTGGTAAGCCTAGGTTACTGTACCCCGTGGGTACTGTAGACGCACAGTCTCATCAAGAGCTTCAACTAGAATATGAGCATCTAGGGTGTTACTATAACTCGAAAATCACTGCTCCAAAGAACACGCACCCCCAATTGAGCCTCTCTCTCCCGCTTCTTTTTTTCGAAAACAAACCCCGCCCACTTTTTGGTGGCCTGACTTTTTTCTTGCTCCAGAATCTTCTGGACTARGGTCAGGTGTTCCTGGGACACGCCAACTGGCTCTATGTGTCAATTTTGCGACATCCACCTCGAAAATATTTTTGGATCAAAGTTGAGATTGAAGAGCTAGATTGGATGCACGTGAAGTCAATTTTTCAGAACGAGAAGGGGGAGAGGGGAAGCCCTGTGTGAAGTACCAGATGGCACAAAACACATGTGGCCGAGTTACAGCTGGCCTAAGAAAATCGGGTCACGAATTACGAGTGTTCAGTTGAACATTTTCTGTGAAGTCGGATCAGGTCTAAATATGGTTATTTACGATGGCCTAGGTTTCATTGGTGTGGCCTAGAAATTTGTAGCGAGCTCCTAAAAATCTTAGCTCCGCCGGCAACCAAAATTGGTTCATTTGGAGCAGATGCTGAGAAATTTCAAGCTTTGTGGTTTGAGAATATCCGGTCTAGATTGAAGCCAAGATCTGAAGACCCTTCAAATCTGGTGCAAGTTTTATAATAAAGCGAATTTCTTGGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>280 199 146 112 100 72 56 20 15</canonical_bands>
                <polymorphic_bands>280 246 199 112 72 56 20 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATATGAGCATCTAGGGTGTTA</pcr_primer_p1>
		<pcr_primer_p2>ATCTCAACTTTGATCCAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAATATGAGCATCTAGGGTGTTACTATAACTCGAAAATCACTGCTCCAAAGAACACGCACCCCCAATTGAGCCTCTCTCTCCCGCTTCTTTTTTTCGAAAACAAACCCCGCCCACTTTTTGGTGGCCTGACTTTTTTCTTGCTCCAGAATCTTCTGGACTAGGGTCAGGTGTTCCTGGGACACGCCAACTGGCTCTATGTGTCAATTTTGCGACATCCACCTCGAAAATATTTTTGGATCAAAGTTGAGAT</canonical_amplicon>
		<polymorphic_amplicon>GAATATGAGCATCTAGGGTGTTACTATAACTCGAAAATCACTGCTCCAAAGAACACGCACCCCCAATTGAGCCTCTCTCTCCCGCTTCTTTTTTTCGAAAACAAACCCCGCCCACTTTTTGGTGGCCTGACTTTTTTCTTGCTCCAGAATCTTCTGGACTARGGTCAGGTGTTCCTGGGACACGCCAACTGGCTCTATGTGTCAATTTTGCGACATCCACCTCGAAAATATTTTTGGATCAAAGTTGAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35153</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>125555</contig_pos>
        <strand>+</strand>
        <context>CGATGGCCTA[A/G]GTTTCATTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCTGTGAAGTCGGATCAGGTCTAAATATGGTTATTTACGATGGCCTA</left_flank>
        <right_flank>GTTTCATTGGTGTGGCCTAGAAATTTGTAGCGAGCTCCTAAAAATCTTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTACTGTAGACGCACAGTCTCATCAAGAGCTTCAACTAGAATATGAGCATCTAGGGTGTTACTATAACTCGAAAATCACTGCTCCAAAGAACACGCACCCCCAATTGAGCCTCTCTCTCCCGCTTCTTTTTTTCGAAAACAAACCCCGCCCACTTTTTGGTGGCCTGACTTTTTTCTTGCTCCAGAATCTTCTGGACTAGGGTCAGGTGTTCCTGGGACACGCCAACTGGCTCTATGTGTCAATTTTGCGACATCCACCTCGAAAATATTTTTGGATCAAAGTTGAGATTGAAGAGCTAGATTGGATGCACGTGAAGTCAATTTTTCAGAACGAGAAGGGGGAGAGGGGAAGCCCTGTGTGAAGTACCAGATGGCACAAAACACATGTGGCCGAGTTACAGCTGGCCTAAGAAAATCGGGTCACGAATTACGAGTGTTCAGTTGAACATTTTCTGTGAAGTCGGATCAGGTCTAAATATGGTTATTTACGATGGCCTAGGTTTCATTGGTGTGGCCTAGAAATTTGTAGCGAGCTCCTAAAAATCTTAGCTCCGCCGGCAACCAAAATTGGTTCATTTGGAGCAGATGCTGAGAAATTTCAAGCTTTGTGGTTTGAGAATATCCGGTCTAGATTGAAGCCAAGATCTGAAGACCCTTCAAATCTGGTGCAAGTTTTATAATAAAGCGAATTTCTTGGAAATACTGTAAAACCTCTATTAAAAGGGCCTCACTAACAGAGGAGACCTTCGGAAATGCCTCGGAGCAATACGTCCGACTCTTCTAATACGGGTTCTATGGTAGCTACAGAATTAAGCTCTGTTCTTGAATTTCCGCAAGATTAAGCCTTGTTTTATACTACTAGAAAACGAGGTTTTGTGTTCCCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCTCTCTCTCTCCTCTCCTTTACTTCTGCTTTTTGCTATCTAAAGCTTCTGTTCCTACTACTTCAGCAACTTCAGCT</canonical>
            <polymorphic>GGTACTGTAGACGCACAGTCTCATCAAGAGCTTCAACTAGAATATGAGCATCTAGGGTGTTACTATAACTCGAAAATCACTGCTCCAAAGAACACGCACCCCCAATTGAGCCTCTCTCTCCCGCTTCTTTTTTTCGAAAACAAACCCCGCCCACTTTTTGGTGGCCTGACTTTTTTCTTGCTCCAGAATCTTCTGGACTAGGGTCAGGTGTTCCTGGGACACGCCAACTGGCTCTATGTGTCAATTTTGCGACATCCACCTCGAAAATATTTTTGGATCAAAGTTGAGATTGAAGAGCTAGATTGGATGCACGTGAAGTCAATTTTTCAGAACGAGAAGGGGGAGAGGGGAAGCCCTGTGTGAAGTACCAGATGGCACAAAACACATGTGGCCGAGTTACAGCTGGCCTAAGAAAATCGGGTCACGAATTACGAGTGTTCAGTTGAACATTTTCTGTGAAGTCGGATCAGGTCTAAATATGGTTATTTACGATGGCCTARGTTTCATTGGTGTGGCCTAGAAATTTGTAGCGAGCTCCTAAAAATCTTAGCTCCGCCGGCAACCAAAATTGGTTCATTTGGAGCAGATGCTGAGAAATTTCAAGCTTTGTGGTTTGAGAATATCCGGTCTAGATTGAAGCCAAGATCTGAAGACCCTTCAAATCTGGTGCAAGTTTTATAATAAAGCGAATTTCTTGGAAATACTGTAAAACCTCTATTAAAAGGGCCTCACTAACAGAGGAGACCTTCGGAAATGCCTCGGAGCAATACGTCCGACTCTTCTAATACGGGTTCTATGGTAGCTACAGAATTAAGCTCTGTTCTTGAATTTCCGCAAGATTAAGCCTTGTTTTATACTACTAGAAAACGAGGTTTTGTGTTCCCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCTCTCTCTCTCCTCTCCTTTACTTCTGCTTTTTGCTATCTAAAGCTTCTGTTCCTACTACTTCAGCAACTTCAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCTAGG</site>
                <isoschizomers>
                    <enzyme>AvrII</enzyme>
                    <enzyme>BlnI</enzyme>
                    <enzyme>BspA2I</enzyme>
                    <enzyme>XmaJI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>231 199 146 140 112 100 37 20 15</canonical_bands>
                <polymorphic_bands>231 219 146 140 112 100 37 15</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>283 261 243 213</canonical_bands>
                <polymorphic_bands>544 243 213</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTACAGCTGGCCTAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTCAATCTAGACCGGATATTCT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGTTACAGCTGGCCTAAGAAAATCGGGTCACGAATTACGAGTGTTCAGTTGAACATTTTCTGTGAAGTCGGATCAGGTCTAAATATGGTTATTTACGATGGCCTAGGTTTCATTGGTGTGGCCTAGAAATTTGTAGCGAGCTCCTAAAAATCTTAGCTCCGCCGGCAACCAAAATTGGTTCATTTGGAGCAGATGCTGAGAAATTTCAAGCTTTGTGGTTTGAGAATATCCGGTCTAGATTGAAG</canonical_amplicon>
		<polymorphic_amplicon>AGTTACAGCTGGCCTAAGAAAATCGGGTCACGAATTACGAGTGTTCAGTTGAACATTTTCTGTGAAGTCGGATCAGGTCTAAATATGGTTATTTACGATGGCCTARGTTTCATTGGTGTGGCCTAGAAATTTGTAGCGAGCTCCTAAAAATCTTAGCTCCGCCGGCAACCAAAATTGGTTCATTTGGAGCAGATGCTGAGAAATTTCAAGCTTTGTGGTTTGAGAATATCCGGTCTAGATTGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35154</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>125670</contig_pos>
        <strand>+</strand>
        <context>CTTTGTGGTT[C/T]GAGAATATCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATTGGTTCATTTGGAGCAGATGCTGAGAAATTTCAAGCTTTGTGGTT</left_flank>
        <right_flank>GAGAATATCCGGTCTAGATTGAAGCCAAGATCTGAAGACCCTTCAAATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTCCCGCTTCTTTTTTTCGAAAACAAACCCCGCCCACTTTTTGGTGGCCTGACTTTTTTCTTGCTCCAGAATCTTCTGGACTAGGGTCAGGTGTTCCTGGGACACGCCAACTGGCTCTATGTGTCAATTTTGCGACATCCACCTCGAAAATATTTTTGGATCAAAGTTGAGATTGAAGAGCTAGATTGGATGCACGTGAAGTCAATTTTTCAGAACGAGAAGGGGGAGAGGGGAAGCCCTGTGTGAAGTACCAGATGGCACAAAACACATGTGGCCGAGTTACAGCTGGCCTAAGAAAATCGGGTCACGAATTACGAGTGTTCAGTTGAACATTTTCTGTGAAGTCGGATCAGGTCTAAATATGGTTATTTACGATGGCCTAGGTTTCATTGGTGTGGCCTAGAAATTTGTAGCGAGCTCCTAAAAATCTTAGCTCCGCCGGCAACCAAAATTGGTTCATTTGGAGCAGATGCTGAGAAATTTCAAGCTTTGTGGTTTGAGAATATCCGGTCTAGATTGAAGCCAAGATCTGAAGACCCTTCAAATCTGGTGCAAGTTTTATAATAAAGCGAATTTCTTGGAAATACTGTAAAACCTCTATTAAAAGGGCCTCACTAACAGAGGAGACCTTCGGAAATGCCTCGGAGCAATACGTCCGACTCTTCTAATACGGGTTCTATGGTAGCTACAGAATTAAGCTCTGTTCTTGAATTTCCGCAAGATTAAGCCTTGTTTTATACTACTAGAAAACGAGGTTTTGTGTTCCCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCTCTCTCTCTCCTCTCCTTTACTTCTGCTTTTTGCTATCTAAAGCTTCTGTTCCTACTACTTCAGCAACTTCAGCTCCCCTTTCTCCTTATCATAATACTCCCCACTCCCGAGGGTTACTGTACCTAATGATTTCATCCCACATCACACTTCCTCTACGCTGACCACCACCATCACCATAACATTCAACAT</canonical>
            <polymorphic>CTCTCCCGCTTCTTTTTTTCGAAAACAAACCCCGCCCACTTTTTGGTGGCCTGACTTTTTTCTTGCTCCAGAATCTTCTGGACTAGGGTCAGGTGTTCCTGGGACACGCCAACTGGCTCTATGTGTCAATTTTGCGACATCCACCTCGAAAATATTTTTGGATCAAAGTTGAGATTGAAGAGCTAGATTGGATGCACGTGAAGTCAATTTTTCAGAACGAGAAGGGGGAGAGGGGAAGCCCTGTGTGAAGTACCAGATGGCACAAAACACATGTGGCCGAGTTACAGCTGGCCTAAGAAAATCGGGTCACGAATTACGAGTGTTCAGTTGAACATTTTCTGTGAAGTCGGATCAGGTCTAAATATGGTTATTTACGATGGCCTAGGTTTCATTGGTGTGGCCTAGAAATTTGTAGCGAGCTCCTAAAAATCTTAGCTCCGCCGGCAACCAAAATTGGTTCATTTGGAGCAGATGCTGAGAAATTTCAAGCTTTGTGGTTYGAGAATATCCGGTCTAGATTGAAGCCAAGATCTGAAGACCCTTCAAATCTGGTGCAAGTTTTATAATAAAGCGAATTTCTTGGAAATACTGTAAAACCTCTATTAAAAGGGCCTCACTAACAGAGGAGACCTTCGGAAATGCCTCGGAGCAATACGTCCGACTCTTCTAATACGGGTTCTATGGTAGCTACAGAATTAAGCTCTGTTCTTGAATTTCCGCAAGATTAAGCCTTGTTTTATACTACTAGAAAACGAGGTTTTGTGTTCCCCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCTCTCTCTCTCCTCTCCTTTACTTCTGCTTTTTGCTATCTAAAGCTTCTGTTCCTACTACTTCAGCAACTTCAGCTCCCCTTTCTCCTTATCATAATACTCCCCACTCCCGAGGGTTACTGTACCTAATGATTTCATCCCACATCACACTTCCTCTACGCTGACCACCACCATCACCATAACATTCAACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTCGGATCAGGTCTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TATTTCCAAGAAATTCGCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAGTCGGATCAGGTCTAAATATGGTTATTTACGATGGCCTAGGTTTCATTGGTGTGGCCTAGAAATTTGTAGCGAGCTCCTAAAAATCTTAGCTCCGCCGGCAACCAAAATTGGTTCATTTGGAGCAGATGCTGAGAAATTTCAAGCTTTGTGGTTTGAGAATATCCGGTCTAGATTGAAGCCAAGATCTGAAGACCCTTCAAATCTGGTGCAAGTTTTATAATAAAGCGAATTTCTTGGAAATA</canonical_amplicon>
		<polymorphic_amplicon>GAAGTCGGATCAGGTCTAAATATGGTTATTTACGATGGCCTAGGTTTCATTGGTGTGGCCTAGAAATTTGTAGCGAGCTCCTAAAAATCTTAGCTCCGCCGGCAACCAAAATTGGTTCATTTGGAGCAGATGCTGAGAAATTTCAAGCTTTGTGGTTYGAGAATATCCGGTCTAGATTGAAGCCAAGATCTGAAGACCCTTCAAATCTGGTGCAAGTTTTATAATAAAGCGAATTTCTTGGAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35155</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>129508</contig_pos>
        <strand>+</strand>
        <context>GTCGAAAATC[C/G]GCGMCCGCCG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CATTAAGAACCAAATTGAAATAAATCATAAGGCGTCCATGGTCGAAAATC</left_flank>
        <right_flank>GCGACCGCCGACCGATCGCCGACCACGCTGGCCGAATTTTTGTATTGTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTCCTGTATAAACAGTGTCTGTTTTATCAGGAGAAGAAGAAGGTGGCTGTTCTTCTTCTTCTTATTCTTTTGATAGTGATATACTGTAGCTGATTTCTTCTTCTTCTTCTTTTATTCTTCAAAGACATCTTTCTCATTTTCTTCTCTTTCATCTATTTCTTGTCCTTTTCTCTCCATTTACGTGACTTCCCTCATCTTCTTCTTTTCAGCACCCCACTCTCTGGAAATGCTCCTCGCCAGCAGCAGCCCAAATCCACGTGGCGCCATGAAGCTGCTCCTCGAGCCAGTGTGCTCCAATGACAACAATAACAAATCCACATATTTCGACGATTCGTGCTGCTCCGAACCCAACTCACCGGATTCCGGATTCTCATCAGATGATAGTATTGCATCCGACGTCTCGTTCTGTGAAAGACTGTGAGTTTGGGGATACTGTAGATTGCTCAGCATTAAGAACCAAATTGAAATAAATCATAAGGCGTCCATGGTCGAAAATCGGCGACCGCCGACCGATCGCCGACCACGCTGGCCGAATTTTTGTATTGTGATTCACGAAACGCGTCGTAAAATAAAATATTGCTTACGCAAACACTGGAATATGGAAATGCAAAAAATCGGCCGGCTTGGTCGGCGGACGGTCGGCGCGGTCGGTCGGCGCGGACCGTCAATGGTCCGTCGATGGTCCGTCGGTGATCCATCGGTGATCCGTCGTTGGTCCCTCATTGGTCCGTCGTTGGTCCGTCGGTGGTCCGCCGGCGGTCCGTCGGCGGTCGCTCGGTCGGCTGTCGGTCGGCTAAGTTTCATCCCTCTTCTCATCTTCTATTTTCTTCCTCTTTTTCTCCCGAATCACCTAGAAACTACGGGTGTTATCAACCGCGCATCACCCCTCTATCACTTTGTGGTACTTGTTTACCCTACCTTACATAGAAAGAATCGGAAACCATATGATTTATTGCCTTATCTCTCCTCCCCATGTCTTCTAAAAAAACTTTGCTTTC</canonical>
            <polymorphic>ACCTCCTGTATAAACAGTGTCTGTTTTATCAGGAGAAGAAGAAGGTGGCTGTTCTTCTTCTTCTTATTCTTTTGATAGTGATATACTGTAGCTGATTTCTTCTTCTTCTTCTTTTATTCTTCAAAGACATCTTTCTCATTTTCTTCTCTTTCATCTATTTCTTGTCCTTTTCTCTCCATTTACGTGACTTCCCTCATCTTCTTCTTTTCAGCACCCCACTCTCTGGAAATGCTCCTCGCCAGCAGCAGCCCAAATCCACGTGGCGCCATGAAGCTGCTCCTCGAGCCAGTGTGCTCCAATGACAACAATAACAAATCCACATATTTCGACGATTCGTGCTGCTCCGAACCCAACTCACCGGATTCCGGATTCTCATCAGATGATAGTATTGCATCCGACGTCTCGTTCTGTGAAAGACTGTGAGTTTGGGGATACTGTAGATTGCTCAGCATTAAGAACCAAATTGAAATAAATCATAAGGCGTCCATGGTCGAAAATCSGCGACCGCCGACCGATCGCCGACCACGCTGGCCGAATTTTTGTATTGTGATTCACGAAACGCGTCGTAAAATAAAATATTGCTTACGCAAACACTGGAATATGGAAATGCAAAAAATCGGCCGGCTTGGTCGGCGGACGGTCGGCGCGGTCGGTCGGCGCGGACCGTCAATGGTCCGTCGATGGTCCGTCGGTGATCCATCGGTGATCCGTCGTTGGTCCCTCATTGGTCCGTCGTTGGTCCGTCGGTGGTCCGCCGGCGGTCCGTCGGCGGTCGCTCGGTCGGCTGTCGGTCGGCTAAGTTTCATCCCTCTTCTCATCTTCTATTTTCTTCCTCTTTTTCTCCCGAATCACCTAGAAACTACGGGTGTTATCAACCGCGCATCACCCCTCTATCACTTTGTGGTACTTGTTTACCCTACCTTACATAGAAAGAATCGGAAACCATATGATTTATTGCCTTATCTCTCCTCCCCATGTCTTCTAAAAAAACTTTGCTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCCACATATTTCGACGAT</pcr_primer_p1>
		<pcr_primer_p2>TTTCGTGAATCACAATACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATCCACATATTTCGACGATTCGTGCTGCTCCGAACCCAACTCACCGGATTCCGGATTCTCATCAGATGATAGTATTGCATCCGACGTCTCGTTCTGTGAAAGACTGTGAGTTTGGGGATACTGTAGATTGCTCAGCATTAAGAACCAAATTGAAATAAATCATAAGGCGTCCATGGTCGAAAATCGGCGACCGCCGACCGATCGCCGACCACGCTGGCCGAATTTTTGTATTGTGATTCACGAAA</canonical_amplicon>
		<polymorphic_amplicon>AAATCCACATATTTCGACGATTCGTGCTGCTCCGAACCCAACTCACCGGATTCCGGATTCTCATCAGATGATAGTATTGCATCCGACGTCTCGTTCTGTGAAAGACTGTGAGTTTGGGGATACTGTAGATTGCTCAGCATTAAGAACCAAATTGAAATAAATCATAAGGCGTCCATGGTCGAAAATCSGCGACCGCCGACCGATCGCCGACCACGCTGGCCGAATTTTTGTATTGTGATTCACGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35156</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>129512</contig_pos>
        <strand>+</strand>
        <context>AAAATCSGCG[A/C]CCGCCGACCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGAACCAAATTGAAATAAATCATAAGGCGTCCATGGTCGAAAATCGGCG</left_flank>
        <right_flank>CCGCCGACCGATCGCCGACCACGCTGGCCGAATTTTTGTATTGTGATTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTGTATAAACAGTGTCTGTTTTATCAGGAGAAGAAGAAGGTGGCTGTTCTTCTTCTTCTTATTCTTTTGATAGTGATATACTGTAGCTGATTTCTTCTTCTTCTTCTTTTATTCTTCAAAGACATCTTTCTCATTTTCTTCTCTTTCATCTATTTCTTGTCCTTTTCTCTCCATTTACGTGACTTCCCTCATCTTCTTCTTTTCAGCACCCCACTCTCTGGAAATGCTCCTCGCCAGCAGCAGCCCAAATCCACGTGGCGCCATGAAGCTGCTCCTCGAGCCAGTGTGCTCCAATGACAACAATAACAAATCCACATATTTCGACGATTCGTGCTGCTCCGAACCCAACTCACCGGATTCCGGATTCTCATCAGATGATAGTATTGCATCCGACGTCTCGTTCTGTGAAAGACTGTGAGTTTGGGGATACTGTAGATTGCTCAGCATTAAGAACCAAATTGAAATAAATCATAAGGCGTCCATGGTCGAAAATCGGCGACCGCCGACCGATCGCCGACCACGCTGGCCGAATTTTTGTATTGTGATTCACGAAACGCGTCGTAAAATAAAATATTGCTTACGCAAACACTGGAATATGGAAATGCAAAAAATCGGCCGGCTTGGTCGGCGGACGGTCGGCGCGGTCGGTCGGCGCGGACCGTCAATGGTCCGTCGATGGTCCGTCGGTGATCCATCGGTGATCCGTCGTTGGTCCCTCATTGGTCCGTCGTTGGTCCGTCGGTGGTCCGCCGGCGGTCCGTCGGCGGTCGCTCGGTCGGCTGTCGGTCGGCTAAGTTTCATCCCTCTTCTCATCTTCTATTTTCTTCCTCTTTTTCTCCCGAATCACCTAGAAACTACGGGTGTTATCAACCGCGCATCACCCCTCTATCACTTTGTGGTACTTGTTTACCCTACCTTACATAGAAAGAATCGGAAACCATATGATTTATTGCCTTATCTCTCCTCCCCATGTCTTCTAAAAAAACTTTGCTTTCTGTG</canonical>
            <polymorphic>CCTGTATAAACAGTGTCTGTTTTATCAGGAGAAGAAGAAGGTGGCTGTTCTTCTTCTTCTTATTCTTTTGATAGTGATATACTGTAGCTGATTTCTTCTTCTTCTTCTTTTATTCTTCAAAGACATCTTTCTCATTTTCTTCTCTTTCATCTATTTCTTGTCCTTTTCTCTCCATTTACGTGACTTCCCTCATCTTCTTCTTTTCAGCACCCCACTCTCTGGAAATGCTCCTCGCCAGCAGCAGCCCAAATCCACGTGGCGCCATGAAGCTGCTCCTCGAGCCAGTGTGCTCCAATGACAACAATAACAAATCCACATATTTCGACGATTCGTGCTGCTCCGAACCCAACTCACCGGATTCCGGATTCTCATCAGATGATAGTATTGCATCCGACGTCTCGTTCTGTGAAAGACTGTGAGTTTGGGGATACTGTAGATTGCTCAGCATTAAGAACCAAATTGAAATAAATCATAAGGCGTCCATGGTCGAAAATCGGCGMCCGCCGACCGATCGCCGACCACGCTGGCCGAATTTTTGTATTGTGATTCACGAAACGCGTCGTAAAATAAAATATTGCTTACGCAAACACTGGAATATGGAAATGCAAAAAATCGGCCGGCTTGGTCGGCGGACGGTCGGCGCGGTCGGTCGGCGCGGACCGTCAATGGTCCGTCGATGGTCCGTCGGTGATCCATCGGTGATCCGTCGTTGGTCCCTCATTGGTCCGTCGTTGGTCCGTCGGTGGTCCGCCGGCGGTCCGTCGGCGGTCGCTCGGTCGGCTGTCGGTCGGCTAAGTTTCATCCCTCTTCTCATCTTCTATTTTCTTCCTCTTTTTCTCCCGAATCACCTAGAAACTACGGGTGTTATCAACCGCGCATCACCCCTCTATCACTTTGTGGTACTTGTTTACCCTACCTTACATAGAAAGAATCGGAAACCATATGATTTATTGCCTTATCTCTCCTCCCCATGTCTTCTAAAAAAACTTTGCTTTCTGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>501 212 119 105 20 11 9 8 7 4 4</canonical_bands>
                <polymorphic_bands>508 212 119 105 20 11 9 8 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCCACATATTTCGACGAT</pcr_primer_p1>
		<pcr_primer_p2>TTTCGTGAATCACAATACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATCCACATATTTCGACGATTCGTGCTGCTCCGAACCCAACTCACCGGATTCCGGATTCTCATCAGATGATAGTATTGCATCCGACGTCTCGTTCTGTGAAAGACTGTGAGTTTGGGGATACTGTAGATTGCTCAGCATTAAGAACCAAATTGAAATAAATCATAAGGCGTCCATGGTCGAAAATCGGCGACCGCCGACCGATCGCCGACCACGCTGGCCGAATTTTTGTATTGTGATTCACGAAA</canonical_amplicon>
		<polymorphic_amplicon>AAATCCACATATTTCGACGATTCGTGCTGCTCCGAACCCAACTCACCGGATTCCGGATTCTCATCAGATGATAGTATTGCATCCGACGTCTCGTTCTGTGAAAGACTGTGAGTTTGGGGATACTGTAGATTGCTCAGCATTAAGAACCAAATTGAAATAAATCATAAGGCGTCCATGGTCGAAAATCGGCGMCCGCCGACCGATCGCCGACCACGCTGGCCGAATTTTTGTATTGTGATTCACGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35157</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>143153</contig_pos>
        <strand>+</strand>
        <context>GGTTGGAGTC[A/G]GTTTCATCGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCACTACCAGCTTCGTTCTTGATTGAGTGATCGGAGGAGGGGTTGGAGTC</left_flank>
        <right_flank>GTTTCATCGGTGCTGGAATATGAGGATTTGGGTTATTCAAGTAGTTATAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACGGTTCTGTTGACTCGTCAACTTCTCCCTTTTCAGGAGAAAAAGTCAGAAAACAAAAAACTTCAGGAAATGCTCAATAGCTTAGCCCCCTCAGATTTTTGATCTCTCAAAAAAATCAAAACTTACAATGGAGTCAATCCCTCAGTCAACGAAACTCGATTCCTCTTCGCCGGCGGTCCTTGCAGTCCATTATTTGAAGCTGATGACGTGGCAGATGGAGAAGGTGTCACCGCCATGGGAATAGGCAAAGGGGGCGGAGTCACAACGTTACCATCGGCTCTTTCTTGGGATGTAGCTCCGCCGGTTTTCGAGGAGGAGCTAGAAGCGGTGGAAGCAGAGCTGGAATCCACATCGGTTGAGGATTTTGATGAATGAGTTTCTTGGGTTCGAATCAATTCATTTTCGATGAATGACATGGCTGCTTCCATTGGAGACACGTGGCCTGGACCACTACCAGCTTCGTTCTTGATTGAGTGATCGGAGGAGGGGTTGGAGTCGGTTTCATCGGTGCTGGAATATGAGGATTTGGGTTATTCAAGTAGTTATAGAGGTCTGAAAAACTAGTTTTGCATAATCAGGTTGTCCGTAAAACCTGTAATAGAAGGACCCCCTGTCTTTCAACTTTGAGCCAATTTATCTCGGTTTCTGACAAAGATTTACAAAAGTTGTCAACTGATAAACTGTTCATCATAATATTAGAAGTGTTCTGTCAGTTGATACATTTTTGATATCTTTCACAGGAAGCTAATGTTAAATTGTTTTCTGAATTTCTAGTTTTTGATCTTTGTTTCTTTGATACAGATATTTTAGAACTTCGAGAAAATGAGTTTAGGAAGTTTTCCATTTGTCCAAAACTTCACGATGACAACATGTTAACCTTGAAGTCCCTGAACAGTTGTTCAACATTTTCCGATTTGTTTGAAAATTCTAGATCATACTAAACCAGAAAAAGATCTTTAATTTACAAATTGACAACTTCTTTTCAGGCTCATCGGAAT</canonical>
            <polymorphic>GAACGGTTCTGTTGACTCGTCAACTTCTCCCTTTTCAGGAGAAAAAGTCAGAAAACAAAAAACTTCAGGAAATGCTCAATAGCTTAGCCCCCTCAGATTTTTGATCTCTCAAAAAAATCAAAACTTACAATGGAGTCAATCCCTCAGTCAACGAAACTCGATTCCTCTTCGCCGGCGGTCCTTGCAGTCCATTATTTGAAGCTGATGACGTGGCAGATGGAGAAGGTGTCACCGCCATGGGAATAGGCAAAGGGGGCGGAGTCACAACGTTACCATCGGCTCTTTCTTGGGATGTAGCTCCGCCGGTTTTCGAGGAGGAGCTAGAAGCGGTGGAAGCAGAGCTGGAATCCACATCGGTTGAGGATTTTGATGAATGAGTTTCTTGGGTTCGAATCAATTCATTTTCGATGAATGACATGGCTGCTTCCATTGGAGACACGTGGCCTGGACCACTACCAGCTTCGTTCTTGATTGAGTGATCGGAGGAGGGGTTGGAGTCRGTTTCATCGGTGCTGGAATATGAGGATTTGGGTTATTCAAGTAGTTATAGAGGTCTGAAAAACTAGTTTTGCATAATCAGGTTGTCCGTAAAACCTGTAATAGAAGGACCCCCTGTCTTTCAACTTTGAGCCAATTTATCTCGGTTTCTGACAAAGATTTACAAAAGTTGTCAACTGATAAACTGTTCATCATAATATTAGAAGTGTTCTGTCAGTTGATACATTTTTGATATCTTTCACAGGAAGCTAATGTTAAATTGTTTTCTGAATTTCTAGTTTTTGATCTTTGTTTCTTTGATACAGATATTTTAGAACTTCGAGAAAATGAGTTTAGGAAGTTTTCCATTTGTCCAAAACTTCACGATGACAACATGTTAACCTTGAAGTCCCTGAACAGTTGTTCAACATTTTCCGATTTGTTTGAAAATTCTAGATCATACTAAACCAGAAAAAGATCTTTAATTTACAAATTGACAACTTCTTTTCAGGCTCATCGGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTACCAGCTTCGTTCTTG</pcr_primer_p1>
		<pcr_primer_p2>GATCAAAAACTAGAAATTCAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>335</pcr_amplicon_size>
		<canonical_amplicon>CACTACCAGCTTCGTTCTTGATTGAGTGATCGGAGGAGGGGTTGGAGTCGGTTTCATCGGTGCTGGAATATGAGGATTTGGGTTATTCAAGTAGTTATAGAGGTCTGAAAAACTAGTTTTGCATAATCAGGTTGTCCGTAAAACCTGTAATAGAAGGACCCCCTGTCTTTCAACTTTGAGCCAATTTATCTCGGTTTCTGACAAAGATTTACAAAAGTTGTCAACTGATAAACTGTTCATCATAATATTAGAAGTGTTCTGTCAGTTGATACATTTTTGATATCTTTCACAGGAAGCTAATGTTAAATTGTTTTCTGAATTTCTAGTTTTTGATC</canonical_amplicon>
		<polymorphic_amplicon>CACTACCAGCTTCGTTCTTGATTGAGTGATCGGAGGAGGGGTTGGAGTCRGTTTCATCGGTGCTGGAATATGAGGATTTGGGTTATTCAAGTAGTTATAGAGGTCTGAAAAACTAGTTTTGCATAATCAGGTTGTCCGTAAAACCTGTAATAGAAGGACCCCCTGTCTTTCAACTTTGAGCCAATTTATCTCGGTTTCTGACAAAGATTTACAAAAGTTGTCAACTGATAAACTGTTCATCATAATATTAGAAGTGTTCTGTCAGTTGATACATTTTTGATATCTTTCACAGGAAGCTAATGTTAAATTGTTTTCTGAATTTCTAGTTTTTGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35158</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>143197</contig_pos>
        <strand>+</strand>
        <context>TATTCAAGTA[A/G]TTATAGAGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAGTCGGTTTCATCGGTGCTGGAATATGAGGATTTGGGTTATTCAAGTA</left_flank>
        <right_flank>TTATAGAGGTCTGAAAAACTAGTTTTGCATAATCAGGTTGTCCGTAAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTCAGAAAACAAAAAACTTCAGGAAATGCTCAATAGCTTAGCCCCCTCAGATTTTTGATCTCTCAAAAAAATCAAAACTTACAATGGAGTCAATCCCTCAGTCAACGAAACTCGATTCCTCTTCGCCGGCGGTCCTTGCAGTCCATTATTTGAAGCTGATGACGTGGCAGATGGAGAAGGTGTCACCGCCATGGGAATAGGCAAAGGGGGCGGAGTCACAACGTTACCATCGGCTCTTTCTTGGGATGTAGCTCCGCCGGTTTTCGAGGAGGAGCTAGAAGCGGTGGAAGCAGAGCTGGAATCCACATCGGTTGAGGATTTTGATGAATGAGTTTCTTGGGTTCGAATCAATTCATTTTCGATGAATGACATGGCTGCTTCCATTGGAGACACGTGGCCTGGACCACTACCAGCTTCGTTCTTGATTGAGTGATCGGAGGAGGGGTTGGAGTCGGTTTCATCGGTGCTGGAATATGAGGATTTGGGTTATTCAAGTAGTTATAGAGGTCTGAAAAACTAGTTTTGCATAATCAGGTTGTCCGTAAAACCTGTAATAGAAGGACCCCCTGTCTTTCAACTTTGAGCCAATTTATCTCGGTTTCTGACAAAGATTTACAAAAGTTGTCAACTGATAAACTGTTCATCATAATATTAGAAGTGTTCTGTCAGTTGATACATTTTTGATATCTTTCACAGGAAGCTAATGTTAAATTGTTTTCTGAATTTCTAGTTTTTGATCTTTGTTTCTTTGATACAGATATTTTAGAACTTCGAGAAAATGAGTTTAGGAAGTTTTCCATTTGTCCAAAACTTCACGATGACAACATGTTAACCTTGAAGTCCCTGAACAGTTGTTCAACATTTTCCGATTTGTTTGAAAATTCTAGATCATACTAAACCAGAAAAAGATCTTTAATTTACAAATTGACAACTTCTTTTCAGGCTCATCGGAATTGATTGACTATATTTTTTAGACAACGGAACATAATATTTTCAAC</canonical>
            <polymorphic>AAGTCAGAAAACAAAAAACTTCAGGAAATGCTCAATAGCTTAGCCCCCTCAGATTTTTGATCTCTCAAAAAAATCAAAACTTACAATGGAGTCAATCCCTCAGTCAACGAAACTCGATTCCTCTTCGCCGGCGGTCCTTGCAGTCCATTATTTGAAGCTGATGACGTGGCAGATGGAGAAGGTGTCACCGCCATGGGAATAGGCAAAGGGGGCGGAGTCACAACGTTACCATCGGCTCTTTCTTGGGATGTAGCTCCGCCGGTTTTCGAGGAGGAGCTAGAAGCGGTGGAAGCAGAGCTGGAATCCACATCGGTTGAGGATTTTGATGAATGAGTTTCTTGGGTTCGAATCAATTCATTTTCGATGAATGACATGGCTGCTTCCATTGGAGACACGTGGCCTGGACCACTACCAGCTTCGTTCTTGATTGAGTGATCGGAGGAGGGGTTGGAGTCGGTTTCATCGGTGCTGGAATATGAGGATTTGGGTTATTCAAGTARTTATAGAGGTCTGAAAAACTAGTTTTGCATAATCAGGTTGTCCGTAAAACCTGTAATAGAAGGACCCCCTGTCTTTCAACTTTGAGCCAATTTATCTCGGTTTCTGACAAAGATTTACAAAAGTTGTCAACTGATAAACTGTTCATCATAATATTAGAAGTGTTCTGTCAGTTGATACATTTTTGATATCTTTCACAGGAAGCTAATGTTAAATTGTTTTCTGAATTTCTAGTTTTTGATCTTTGTTTCTTTGATACAGATATTTTAGAACTTCGAGAAAATGAGTTTAGGAAGTTTTCCATTTGTCCAAAACTTCACGATGACAACATGTTAACCTTGAAGTCCCTGAACAGTTGTTCAACATTTTCCGATTTGTTTGAAAATTCTAGATCATACTAAACCAGAAAAAGATCTTTAATTTACAAATTGACAACTTCTTTTCAGGCTCATCGGAATTGATTGACTATATTTTTTAGACAACGGAACATAATATTTTCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCGTTCTTGATTGAGTGAT</pcr_primer_p1>
		<pcr_primer_p2>GATCAAAAACTAGAAATTCAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>326</pcr_amplicon_size>
		<canonical_amplicon>CTTCGTTCTTGATTGAGTGATCGGAGGAGGGGTTGGAGTCGGTTTCATCGGTGCTGGAATATGAGGATTTGGGTTATTCAAGTAGTTATAGAGGTCTGAAAAACTAGTTTTGCATAATCAGGTTGTCCGTAAAACCTGTAATAGAAGGACCCCCTGTCTTTCAACTTTGAGCCAATTTATCTCGGTTTCTGACAAAGATTTACAAAAGTTGTCAACTGATAAACTGTTCATCATAATATTAGAAGTGTTCTGTCAGTTGATACATTTTTGATATCTTTCACAGGAAGCTAATGTTAAATTGTTTTCTGAATTTCTAGTTTTTGATC</canonical_amplicon>
		<polymorphic_amplicon>CTTCGTTCTTGATTGAGTGATCGGAGGAGGGGTTGGAGTCGGTTTCATCGGTGCTGGAATATGAGGATTTGGGTTATTCAAGTARTTATAGAGGTCTGAAAAACTAGTTTTGCATAATCAGGTTGTCCGTAAAACCTGTAATAGAAGGACCCCCTGTCTTTCAACTTTGAGCCAATTTATCTCGGTTTCTGACAAAGATTTACAAAAGTTGTCAACTGATAAACTGTTCATCATAATATTAGAAGTGTTCTGTCAGTTGATACATTTTTGATATCTTTCACAGGAAGCTAATGTTAAATTGTTTTCTGAATTTCTAGTTTTTGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35159</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>146865</contig_pos>
        <strand>+</strand>
        <context>CAACTCTGGA[A/G]CCTGGAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGCACATAGGGTAATTAACAATTGAAGAACATATGTTGTCAACTCTGGA</left_flank>
        <right_flank>CCTGGAAAATCTATTTTTCACAATCAAATTATTTTGGAATTCTAAAACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAATTTCAGATTTTTGGAAGCTTCAGAATACCGGAAATGATCTAGTAGAAGCCCACCCTATAGCCCCCTCTGAAATTCATTCAAGCACATTTGAAGGATAGACAGTAAGTGGGAATTGGAAACTTTAATAGAGGCCCACCCCCGTTTGAGCTCAATTATCTCGGTTTCTGTAACAGATATCAAAAATCTGTCAACTGATAAAATAATGGCGACGTTATGATAAACATTTTACCAGTTGACCACTTTTTGATATATTTTAAAAGAACGCAGTAAATTCAGATCAAGCGCGCATATAGGGAAGGTTTCTATTAGAGCTTCTCCTCTACGTGCTCTATAATATTGTTGATTTTATGATAAAAATTTTATCAGTTGAAAACTTTTTGATATTTTCCGAAGAAACCAAGATAATTGAGCTCAAAGTGTATGTATAGGGTAGGCTTCTTATTGAGCACATAGGGTAATTAACAATTGAAGAACATATGTTGTCAACTCTGGAACCTGGAAAATCTATTTTTCACAATCAAATTATTTTGGAATTCTAAAACAAATCTATTGCGAAAGTTTTCAGAACATCGATTTTCGGCAACGGAAAATTCAAAAATAAAAACTGTCGAAATACCGTAACTCAATCAGTTTTGCTTTAAACTCAACAAAATTTGAATATATCAATTTCTCATCATGCGAGCTTCAAATTGAGTATAAACACGCCTAGGCTCCGCCCATTTTCAAAATTCGGAACCCATTGTGCATTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTAGTGCAAAGCCATTTTTGAATATGGAAACTATAACAGATGCAGATGAAAATTGCCTTACAAATTTTGTCAGAAAAATTGGAAAAAATTGAGAATTTTCGAAAACTCGTTTTTAAAGTTTGAAAAAATTGTTATTTACGGAATTATAATTATTATAACATGGAAGAAAAGTTTTAAAAATTTAAGGATGG</canonical>
            <polymorphic>TTTGAATTTCAGATTTTTGGAAGCTTCAGAATACCGGAAATGATCTAGTAGAAGCCCACCCTATAGCCCCCTCTGAAATTCATTCAAGCACATTTGAAGGATAGACAGTAAGTGGGAATTGGAAACTTTAATAGAGGCCCACCCCCGTTTGAGCTCAATTATCTCGGTTTCTGTAACAGATATCAAAAATCTGTCAACTGATAAAATAATGGCGACGTTATGATAAACATTTTACCAGTTGACCACTTTTTGATATATTTTAAAAGAACGCAGTAAATTCAGATCAAGCGCGCATATAGGGAAGGTTTCTATTAGAGCTTCTCCTCTACGTGCTCTATAATATTGTTGATTTTATGATAAAAATTTTATCAGTTGAAAACTTTTTGATATTTTCCGAAGAAACCAAGATAATTGAGCTCAAAGTGTATGTATAGGGTAGGCTTCTTATTGAGCACATAGGGTAATTAACAATTGAAGAACATATGTTGTCAACTCTGGARCCTGGAAAATCTATTTTTCACAATCAAATTATTTTGGAATTCTAAAACAAATCTATTGCGAAAGTTTTCAGAACATCGATTTTCGGCAACGGAAAATTCAAAAATAAAAACTGTCGAAATACCGTAACTCAATCAGTTTTGCTTTAAACTCAACAAAATTTGAATATATCAATTTCTCATCATGCGAGCTTCAAATTGAGTATAAACACGCCTAGGCTCCGCCCATTTTCAAAATTCGGAACCCATTGTGCATTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTAGTGCAAAGCCATTTTTGAATATGGAAACTATAACAGATGCAGATGAAAATTGCCTTACAAATTTTGTCAGAAAAATTGGAAAAAATTGAGAATTTTCGAAAACTCGTTTTTAAAGTTTGAAAAAATTGTTATTTACGGAATTATAATTATTATAACATGGAAGAAAAGTTTTAAAAATTTAAGGATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATAGGGTAGGCTTCTTATTG</pcr_primer_p1>
		<pcr_primer_p2>CGACAGTTTTTATTTTTGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>189</pcr_amplicon_size>
		<canonical_amplicon>TGTATAGGGTAGGCTTCTTATTGAGCACATAGGGTAATTAACAATTGAAGAACATATGTTGTCAACTCTGGAACCTGGAAAATCTATTTTTCACAATCAAATTATTTTGGAATTCTAAAACAAATCTATTGCGAAAGTTTTCAGAACATCGATTTTCGGCAACGGAAAATTCAAAAATAAAAACTGTCG</canonical_amplicon>
		<polymorphic_amplicon>TGTATAGGGTAGGCTTCTTATTGAGCACATAGGGTAATTAACAATTGAAGAACATATGTTGTCAACTCTGGARCCTGGAAAATCTATTTTTCACAATCAAATTATTTTGGAATTCTAAAACAAATCTATTGCGAAAGTTTTCAGAACATCGATTTTCGGCAACGGAAAATTCAAAAATAAAAACTGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35160</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>147027</contig_pos>
        <strand></strand>
        <context>aacaaaattt[G/A]aatatatcaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGTCGAAATACCGTAACTCAATCAGTTTTGCTTTAAACTCAACAAAATTT</left_flank>
        <right_flank>AATATATCAATTTCTCATCATGCGAGCTTCAAATTGAGTATAAACACGCC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGGTTTCTGTAACAGATATCAAAAATCTGTCAACTGATAAAATAATGGCGACGTTATGATAAACATTTTACCAGTTGACCACTTTTTGATATATTTTAAAAGAACGCAGTAAATTCAGATCAAGCGCGCATATAGGGAAGGTTTCTATTAGAGCTTCTCCTCTACGTGCTCTATAATATTGTTGATTTTATGATAAAAATTTTATCAGTTGAAAACTTTTTGATATTTTCCGAAGAAACCAAGATAATTGAGCTCAAAGTGTATGTATAGGGTAGGCTTCTTATTGAGCACATAGGGTAATTAACAATTGAAGAACATATGTTGTCAACTCTGGAACCTGGAAAATCTATTTTTCACAATCAAATTATTTTGGAATTCTAAAACAAATCTATTGCGAAAGTTTTCAGAACATCGATTTTCGGCAACGGAAAATTCAAAAATAAAAACTGTCGAAATACCGTAACTCAATCAGTTTTGCTTTAAACTCAACAAAATTTGAATATATCAATTTCTCATCATGCGAGCTTCAAATTGAGTATAAACACGCCTAGGCTCCGCCCATTTTCAAAATTCGGAACCCATTGTGCATTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTAGTGCAAAGCCATTTTTGAATATGGAAACTATAACAGATGCAGATGAAAATTGCCTTACAAATTTTGTCAGAAAAATTGGAAAAAATTGAGAATTTTCGAAAACTCGTTTTTAAAGTTTGAAAAAATTGTTATTTACGGAATTATAATTATTATAACATGGAAGAAAAGTTTTAAAAATTTAAGGATGGGGTTGTGTTTTTACAAACGACAGTGATGACATATGGACACAGATACAGATATAACATACCGTTAAACCTGTAATAGAAGGGTCCCCGAACTTTGAGCCAATTTATCTCGGTTCCCGTTAAAGATATAAAAAAGTAGTCAACTAATAAAACATTTTTGATGTT</canonical>
            <polymorphic>CTCGGTTTCTGTAACAGATATCAAAAATCTGTCAACTGATAAAATAATGGCGACGTTATGATAAACATTTTACCAGTTGACCACTTTTTGATATATTTTAAAAGAACGCAGTAAATTCAGATCAAGCGCGCATATAGGGAAGGTTTCTATTAGAGCTTCTCCTCTACGTGCTCTATAATATTGTTGATTTTATGATAAAAATTTTATCAGTTGAAAACTTTTTGATATTTTCCGAAGAAACCAAGATAATTGAGCTCAAAGTGTATGTATAGGGTAGGCTTCTTATTGAGCACATAGGGTAATTAACAATTGAAGAACATATGTTGTCAACTCTGGAACCTGGAAAATCTATTTTTCACAATCAAATTATTTTGGAATTCTAAAACAAATCTATTGCGAAAGTTTTCAGAACATCGATTTTCGGCAACGGAAAATTCAAAAATAAAAACTGTCGAAATACCGTAACTCAATCAGTTTTGCTTTAAACTCAACAAAATTTRAATATATCAATTTCTCATCATGCGAGCTTCAAATTGAGTATAAACACGCCTAGGCTCCGCCCATTTTCAAAATTCGGAACCCATTGTGCATTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTAGTGCAAAGCCATTTTTGAATATGGAAACTATAACAGATGCAGATGAAAATTGCCTTACAAATTTTGTCAGAAAAATTGGAAAAAATTGAGAATTTTCGAAAACTCGTTTTTAAAGTTTGAAAAAATTGTTATTTACGGAATTATAATTATTATAACATGGAAGAAAAGTTTTAAAAATTTAAGGATGGGGTTGTGTTTTTACAAACGACAGTGATGACATATGGACACAGATACAGATATAACATACCGTTAAACCTGTAATAGAAGGGTCCCCGAACTTTGAGCCAATTTATCTCGGTTCCCGTTAAAGATATAAAAAAGTAGTCAACTAATAAAACATTTTTGATGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGGAAAATTCAAAAATAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TCTGTTATAGTTTCCATATTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>ACGGAAAATTCAAAAATAAAAACTGTCGAAATACCGTAACTCAATCAGTTTTGCTTTAAACTCAACAAAATTTGAATATATCAATTTCTCATCATGCGAGCTTCAAATTGAGTATAAACACGCCTAGGCTCCGCCCATTTTCAAAATTCGGAACCCATTGTGCATTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTAGTGCAAAGCCATTTTTGAATATGGAAACTATAACAGA</canonical_amplicon>
		<polymorphic_amplicon>ACGGAAAATTCAAAAATAAAAACTGTCGAAATACCGTAACTCAATCAGTTTTGCTTTAAACTCAACAAAATTTRAATATATCAATTTCTCATCATGCGAGCTTCAAATTGAGTATAAACACGCCTAGGCTCCGCCCATTTTCAAAATTCGGAACCCATTGTGCATTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTAGTGCAAAGCCATTTTTGAATATGGAAACTATAACAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35161</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>147091</contig_pos>
        <strand></strand>
        <context>gctccgccca[T/C]tttcaaaatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTCATCATGCGAGCTTCAAATTGAGTATAAACACGCCTAGGCTCCGCCCA</left_flank>
        <right_flank>TTTCAAAATTCGGAACCCATTGTGCATTTAAACCCAAACTTCGAAATGGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATTTTACCAGTTGACCACTTTTTGATATATTTTAAAAGAACGCAGTAAATTCAGATCAAGCGCGCATATAGGGAAGGTTTCTATTAGAGCTTCTCCTCTACGTGCTCTATAATATTGTTGATTTTATGATAAAAATTTTATCAGTTGAAAACTTTTTGATATTTTCCGAAGAAACCAAGATAATTGAGCTCAAAGTGTATGTATAGGGTAGGCTTCTTATTGAGCACATAGGGTAATTAACAATTGAAGAACATATGTTGTCAACTCTGGAACCTGGAAAATCTATTTTTCACAATCAAATTATTTTGGAATTCTAAAACAAATCTATTGCGAAAGTTTTCAGAACATCGATTTTCGGCAACGGAAAATTCAAAAATAAAAACTGTCGAAATACCGTAACTCAATCAGTTTTGCTTTAAACTCAACAAAATTTGAATATATCAATTTCTCATCATGCGAGCTTCAAATTGAGTATAAACACGCCTAGGCTCCGCCCATTTTCAAAATTCGGAACCCATTGTGCATTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTAGTGCAAAGCCATTTTTGAATATGGAAACTATAACAGATGCAGATGAAAATTGCCTTACAAATTTTGTCAGAAAAATTGGAAAAAATTGAGAATTTTCGAAAACTCGTTTTTAAAGTTTGAAAAAATTGTTATTTACGGAATTATAATTATTATAACATGGAAGAAAAGTTTTAAAAATTTAAGGATGGGGTTGTGTTTTTACAAACGACAGTGATGACATATGGACACAGATACAGATATAACATACCGTTAAACCTGTAATAGAAGGGTCCCCGAACTTTGAGCCAATTTATCTCGGTTCCCGTTAAAGATATAAAAAAGTAGTCAACTAATAAAACATTTTTGATGTTGTGATAAACATTTTTGTAGTTGACAACTTTTTGATATACTTTATAGGAAATAAGATTAATTAGC</canonical>
            <polymorphic>ACATTTTACCAGTTGACCACTTTTTGATATATTTTAAAAGAACGCAGTAAATTCAGATCAAGCGCGCATATAGGGAAGGTTTCTATTAGAGCTTCTCCTCTACGTGCTCTATAATATTGTTGATTTTATGATAAAAATTTTATCAGTTGAAAACTTTTTGATATTTTCCGAAGAAACCAAGATAATTGAGCTCAAAGTGTATGTATAGGGTAGGCTTCTTATTGAGCACATAGGGTAATTAACAATTGAAGAACATATGTTGTCAACTCTGGAACCTGGAAAATCTATTTTTCACAATCAAATTATTTTGGAATTCTAAAACAAATCTATTGCGAAAGTTTTCAGAACATCGATTTTCGGCAACGGAAAATTCAAAAATAAAAACTGTCGAAATACCGTAACTCAATCAGTTTTGCTTTAAACTCAACAAAATTTGAATATATCAATTTCTCATCATGCGAGCTTCAAATTGAGTATAAACACGCCTAGGCTCCGCCCAYTTTCAAAATTCGGAACCCATTGTGCATTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTAGTGCAAAGCCATTTTTGAATATGGAAACTATAACAGATGCAGATGAAAATTGCCTTACAAATTTTGTCAGAAAAATTGGAAAAAATTGAGAATTTTCGAAAACTCGTTTTTAAAGTTTGAAAAAATTGTTATTTACGGAATTATAATTATTATAACATGGAAGAAAAGTTTTAAAAATTTAAGGATGGGGTTGTGTTTTTACAAACGACAGTGATGACATATGGACACAGATACAGATATAACATACCGTTAAACCTGTAATAGAAGGGTCCCCGAACTTTGAGCCAATTTATCTCGGTTCCCGTTAAAGATATAAAAAAGTAGTCAACTAATAAAACATTTTTGATGTTGTGATAAACATTTTTGTAGTTGACAACTTTTTGATATACTTTATAGGAAATAAGATTAATTAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGGAAAATTCAAAAATAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TCTGTTATAGTTTCCATATTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>ACGGAAAATTCAAAAATAAAAACTGTCGAAATACCGTAACTCAATCAGTTTTGCTTTAAACTCAACAAAATTTGAATATATCAATTTCTCATCATGCGAGCTTCAAATTGAGTATAAACACGCCTAGGCTCCGCCCATTTTCAAAATTCGGAACCCATTGTGCATTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTAGTGCAAAGCCATTTTTGAATATGGAAACTATAACAGA</canonical_amplicon>
		<polymorphic_amplicon>ACGGAAAATTCAAAAATAAAAACTGTCGAAATACCGTAACTCAATCAGTTTTGCTTTAAACTCAACAAAATTTGAATATATCAATTTCTCATCATGCGAGCTTCAAATTGAGTATAAACACGCCTAGGCTCCGCCCAYTTTCAAAATTCGGAACCCATTGTGCATTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTAGTGCAAAGCCATTTTTGAATATGGAAACTATAACAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35162</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>147117</contig_pos>
        <strand></strand>
        <context>cccattgtgc[A/C]tttaaaccca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATAAACACGCCTAGGCTCCGCCCATTTTCAAAATTCGGAACCCATTGTGC</left_flank>
        <right_flank>TTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATACTCAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATATTTTAAAAGAACGCAGTAAATTCAGATCAAGCGCGCATATAGGGAAGGTTTCTATTAGAGCTTCTCCTCTACGTGCTCTATAATATTGTTGATTTTATGATAAAAATTTTATCAGTTGAAAACTTTTTGATATTTTCCGAAGAAACCAAGATAATTGAGCTCAAAGTGTATGTATAGGGTAGGCTTCTTATTGAGCACATAGGGTAATTAACAATTGAAGAACATATGTTGTCAACTCTGGAACCTGGAAAATCTATTTTTCACAATCAAATTATTTTGGAATTCTAAAACAAATCTATTGCGAAAGTTTTCAGAACATCGATTTTCGGCAACGGAAAATTCAAAAATAAAAACTGTCGAAATACCGTAACTCAATCAGTTTTGCTTTAAACTCAACAAAATTTGAATATATCAATTTCTCATCATGCGAGCTTCAAATTGAGTATAAACACGCCTAGGCTCCGCCCATTTTCAAAATTCGGAACCCATTGTGCATTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTAGTGCAAAGCCATTTTTGAATATGGAAACTATAACAGATGCAGATGAAAATTGCCTTACAAATTTTGTCAGAAAAATTGGAAAAAATTGAGAATTTTCGAAAACTCGTTTTTAAAGTTTGAAAAAATTGTTATTTACGGAATTATAATTATTATAACATGGAAGAAAAGTTTTAAAAATTTAAGGATGGGGTTGTGTTTTTACAAACGACAGTGATGACATATGGACACAGATACAGATATAACATACCGTTAAACCTGTAATAGAAGGGTCCCCGAACTTTGAGCCAATTTATCTCGGTTCCCGTTAAAGATATAAAAAAGTAGTCAACTAATAAAACATTTTTGATGTTGTGATAAACATTTTTGTAGTTGACAACTTTTTGATATACTTTATAGGAAATAAGATTAATTAGCTCAAACTTGAGAGTGAAAGCCAAGAG</canonical>
            <polymorphic>ATATATTTTAAAAGAACGCAGTAAATTCAGATCAAGCGCGCATATAGGGAAGGTTTCTATTAGAGCTTCTCCTCTACGTGCTCTATAATATTGTTGATTTTATGATAAAAATTTTATCAGTTGAAAACTTTTTGATATTTTCCGAAGAAACCAAGATAATTGAGCTCAAAGTGTATGTATAGGGTAGGCTTCTTATTGAGCACATAGGGTAATTAACAATTGAAGAACATATGTTGTCAACTCTGGAACCTGGAAAATCTATTTTTCACAATCAAATTATTTTGGAATTCTAAAACAAATCTATTGCGAAAGTTTTCAGAACATCGATTTTCGGCAACGGAAAATTCAAAAATAAAAACTGTCGAAATACCGTAACTCAATCAGTTTTGCTTTAAACTCAACAAAATTTGAATATATCAATTTCTCATCATGCGAGCTTCAAATTGAGTATAAACACGCCTAGGCTCCGCCCATTTTCAAAATTCGGAACCCATTGTGCMTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTAGTGCAAAGCCATTTTTGAATATGGAAACTATAACAGATGCAGATGAAAATTGCCTTACAAATTTTGTCAGAAAAATTGGAAAAAATTGAGAATTTTCGAAAACTCGTTTTTAAAGTTTGAAAAAATTGTTATTTACGGAATTATAATTATTATAACATGGAAGAAAAGTTTTAAAAATTTAAGGATGGGGTTGTGTTTTTACAAACGACAGTGATGACATATGGACACAGATACAGATATAACATACCGTTAAACCTGTAATAGAAGGGTCCCCGAACTTTGAGCCAATTTATCTCGGTTCCCGTTAAAGATATAAAAAAGTAGTCAACTAATAAAACATTTTTGATGTTGTGATAAACATTTTTGTAGTTGACAACTTTTTGATATACTTTATAGGAAATAAGATTAATTAGCTCAAACTTGAGAGTGAAAGCCAAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>498 401 65 36</canonical_bands>
                <polymorphic_bands>563 401 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGGAAAATTCAAAAATAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TCTGTTATAGTTTCCATATTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>ACGGAAAATTCAAAAATAAAAACTGTCGAAATACCGTAACTCAATCAGTTTTGCTTTAAACTCAACAAAATTTGAATATATCAATTTCTCATCATGCGAGCTTCAAATTGAGTATAAACACGCCTAGGCTCCGCCCATTTTCAAAATTCGGAACCCATTGTGCATTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTAGTGCAAAGCCATTTTTGAATATGGAAACTATAACAGA</canonical_amplicon>
		<polymorphic_amplicon>ACGGAAAATTCAAAAATAAAAACTGTCGAAATACCGTAACTCAATCAGTTTTGCTTTAAACTCAACAAAATTTGAATATATCAATTTCTCATCATGCGAGCTTCAAATTGAGTATAAACACGCCTAGGCTCCGCCCATTTTCAAAATTCGGAACCCATTGTGCMTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTAGTGCAAAGCCATTTTTGAATATGGAAACTATAACAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35163</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>147182</contig_pos>
        <strand></strand>
        <context>aagctagtgc[A/C]aagscaTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCGAAATGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTAGTGC</left_flank>
        <right_flank>AAGCCATTTTTGAATATGGAAACTATAACAGATGCAGATGAAAATTGCCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCTCCTCTACGTGCTCTATAATATTGTTGATTTTATGATAAAAATTTTATCAGTTGAAAACTTTTTGATATTTTCCGAAGAAACCAAGATAATTGAGCTCAAAGTGTATGTATAGGGTAGGCTTCTTATTGAGCACATAGGGTAATTAACAATTGAAGAACATATGTTGTCAACTCTGGAACCTGGAAAATCTATTTTTCACAATCAAATTATTTTGGAATTCTAAAACAAATCTATTGCGAAAGTTTTCAGAACATCGATTTTCGGCAACGGAAAATTCAAAAATAAAAACTGTCGAAATACCGTAACTCAATCAGTTTTGCTTTAAACTCAACAAAATTTGAATATATCAATTTCTCATCATGCGAGCTTCAAATTGAGTATAAACACGCCTAGGCTCCGCCCATTTTCAAAATTCGGAACCCATTGTGCATTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTAGTGCAAAGCCATTTTTGAATATGGAAACTATAACAGATGCAGATGAAAATTGCCTTACAAATTTTGTCAGAAAAATTGGAAAAAATTGAGAATTTTCGAAAACTCGTTTTTAAAGTTTGAAAAAATTGTTATTTACGGAATTATAATTATTATAACATGGAAGAAAAGTTTTAAAAATTTAAGGATGGGGTTGTGTTTTTACAAACGACAGTGATGACATATGGACACAGATACAGATATAACATACCGTTAAACCTGTAATAGAAGGGTCCCCGAACTTTGAGCCAATTTATCTCGGTTCCCGTTAAAGATATAAAAAAGTAGTCAACTAATAAAACATTTTTGATGTTGTGATAAACATTTTTGTAGTTGACAACTTTTTGATATACTTTATAGGAAATAAGATTAATTAGCTCAAACTTGAGAGTGAAAGCCAAGAGAGCCAAGACGAAATTTTTTCCAGGAAAAAAACGTAGTATTTAATACTACGTTATTATGTTTTTTC</canonical>
            <polymorphic>CTTCTCCTCTACGTGCTCTATAATATTGTTGATTTTATGATAAAAATTTTATCAGTTGAAAACTTTTTGATATTTTCCGAAGAAACCAAGATAATTGAGCTCAAAGTGTATGTATAGGGTAGGCTTCTTATTGAGCACATAGGGTAATTAACAATTGAAGAACATATGTTGTCAACTCTGGAACCTGGAAAATCTATTTTTCACAATCAAATTATTTTGGAATTCTAAAACAAATCTATTGCGAAAGTTTTCAGAACATCGATTTTCGGCAACGGAAAATTCAAAAATAAAAACTGTCGAAATACCGTAACTCAATCAGTTTTGCTTTAAACTCAACAAAATTTGAATATATCAATTTCTCATCATGCGAGCTTCAAATTGAGTATAAACACGCCTAGGCTCCGCCCATTTTCAAAATTCGGAACCCATTGTGCATTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTAGTGCMAAGCCATTTTTGAATATGGAAACTATAACAGATGCAGATGAAAATTGCCTTACAAATTTTGTCAGAAAAATTGGAAAAAATTGAGAATTTTCGAAAACTCGTTTTTAAAGTTTGAAAAAATTGTTATTTACGGAATTATAATTATTATAACATGGAAGAAAAGTTTTAAAAATTTAAGGATGGGGTTGTGTTTTTACAAACGACAGTGATGACATATGGACACAGATACAGATATAACATACCGTTAAACCTGTAATAGAAGGGTCCCCGAACTTTGAGCCAATTTATCTCGGTTCCCGTTAAAGATATAAAAAAGTAGTCAACTAATAAAACATTTTTGATGTTGTGATAAACATTTTTGTAGTTGACAACTTTTTGATATACTTTATAGGAAATAAGATTAATTAGCTCAAACTTGAGAGTGAAAGCCAAGAGAGCCAAGACGAAATTTTTTCCAGGAAAAAAACGTAGTATTTAATACTACGTTATTATGTTTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>466 433 65 36</canonical_bands>
                <polymorphic_bands>466 433 101</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGGAAAATTCAAAAATAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTGTAAGGCAATTTTCATCTG</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>ACGGAAAATTCAAAAATAAAAACTGTCGAAATACCGTAACTCAATCAGTTTTGCTTTAAACTCAACAAAATTTGAATATATCAATTTCTCATCATGCGAGCTTCAAATTGAGTATAAACACGCCTAGGCTCCGCCCATTTTCAAAATTCGGAACCCATTGTGCATTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTAGTGCAAAGCCATTTTTGAATATGGAAACTATAACAGATGCAGATGAAAATTGCCTTACAA</canonical_amplicon>
		<polymorphic_amplicon>ACGGAAAATTCAAAAATAAAAACTGTCGAAATACCGTAACTCAATCAGTTTTGCTTTAAACTCAACAAAATTTGAATATATCAATTTCTCATCATGCGAGCTTCAAATTGAGTATAAACACGCCTAGGCTCCGCCCATTTTCAAAATTCGGAACCCATTGTGCATTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTAGTGCMAAGCCATTTTTGAATATGGAAACTATAACAGATGCAGATGAAAATTGCCTTACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35164</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>147186</contig_pos>
        <strand></strand>
        <context>tagtgcmaag[C/G]caTTTTTGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTAGTGCAAAG</left_flank>
        <right_flank>CATTTTTGAATATGGAAACTATAACAGATGCAGATGAAAATTGCCTTACA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTCTACGTGCTCTATAATATTGTTGATTTTATGATAAAAATTTTATCAGTTGAAAACTTTTTGATATTTTCCGAAGAAACCAAGATAATTGAGCTCAAAGTGTATGTATAGGGTAGGCTTCTTATTGAGCACATAGGGTAATTAACAATTGAAGAACATATGTTGTCAACTCTGGAACCTGGAAAATCTATTTTTCACAATCAAATTATTTTGGAATTCTAAAACAAATCTATTGCGAAAGTTTTCAGAACATCGATTTTCGGCAACGGAAAATTCAAAAATAAAAACTGTCGAAATACCGTAACTCAATCAGTTTTGCTTTAAACTCAACAAAATTTGAATATATCAATTTCTCATCATGCGAGCTTCAAATTGAGTATAAACACGCCTAGGCTCCGCCCATTTTCAAAATTCGGAACCCATTGTGCATTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTAGTGCAAAGCCATTTTTGAATATGGAAACTATAACAGATGCAGATGAAAATTGCCTTACAAATTTTGTCAGAAAAATTGGAAAAAATTGAGAATTTTCGAAAACTCGTTTTTAAAGTTTGAAAAAATTGTTATTTACGGAATTATAATTATTATAACATGGAAGAAAAGTTTTAAAAATTTAAGGATGGGGTTGTGTTTTTACAAACGACAGTGATGACATATGGACACAGATACAGATATAACATACCGTTAAACCTGTAATAGAAGGGTCCCCGAACTTTGAGCCAATTTATCTCGGTTCCCGTTAAAGATATAAAAAAGTAGTCAACTAATAAAACATTTTTGATGTTGTGATAAACATTTTTGTAGTTGACAACTTTTTGATATACTTTATAGGAAATAAGATTAATTAGCTCAAACTTGAGAGTGAAAGCCAAGAGAGCCAAGACGAAATTTTTTCCAGGAAAAAAACGTAGTATTTAATACTACGTTATTATGTTTTTTCTTTC</canonical>
            <polymorphic>TCCTCTACGTGCTCTATAATATTGTTGATTTTATGATAAAAATTTTATCAGTTGAAAACTTTTTGATATTTTCCGAAGAAACCAAGATAATTGAGCTCAAAGTGTATGTATAGGGTAGGCTTCTTATTGAGCACATAGGGTAATTAACAATTGAAGAACATATGTTGTCAACTCTGGAACCTGGAAAATCTATTTTTCACAATCAAATTATTTTGGAATTCTAAAACAAATCTATTGCGAAAGTTTTCAGAACATCGATTTTCGGCAACGGAAAATTCAAAAATAAAAACTGTCGAAATACCGTAACTCAATCAGTTTTGCTTTAAACTCAACAAAATTTGAATATATCAATTTCTCATCATGCGAGCTTCAAATTGAGTATAAACACGCCTAGGCTCCGCCCATTTTCAAAATTCGGAACCCATTGTGCATTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTAGTGCAAAGSCATTTTTGAATATGGAAACTATAACAGATGCAGATGAAAATTGCCTTACAAATTTTGTCAGAAAAATTGGAAAAAATTGAGAATTTTCGAAAACTCGTTTTTAAAGTTTGAAAAAATTGTTATTTACGGAATTATAATTATTATAACATGGAAGAAAAGTTTTAAAAATTTAAGGATGGGGTTGTGTTTTTACAAACGACAGTGATGACATATGGACACAGATACAGATATAACATACCGTTAAACCTGTAATAGAAGGGTCCCCGAACTTTGAGCCAATTTATCTCGGTTCCCGTTAAAGATATAAAAAAGTAGTCAACTAATAAAACATTTTTGATGTTGTGATAAACATTTTTGTAGTTGACAACTTTTTGATATACTTTATAGGAAATAAGATTAATTAGCTCAAACTTGAGAGTGAAAGCCAAGAGAGCCAAGACGAAATTTTTTCCAGGAAAAAAACGTAGTATTTAATACTACGTTATTATGTTTTTTCTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>276 248 129 95 67 65 28 28 24 20 11 9</canonical_bands>
                <polymorphic_bands>287 248 129 95 67 65 28 28 24 20 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGGAAAATTCAAAAATAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>AATTTGTAAGGCAATTTTCATC</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>ACGGAAAATTCAAAAATAAAAACTGTCGAAATACCGTAACTCAATCAGTTTTGCTTTAAACTCAACAAAATTTGAATATATCAATTTCTCATCATGCGAGCTTCAAATTGAGTATAAACACGCCTAGGCTCCGCCCATTTTCAAAATTCGGAACCCATTGTGCATTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTAGTGCAAAGCCATTTTTGAATATGGAAACTATAACAGATGCAGATGAAAATTGCCTTACAAATT</canonical_amplicon>
		<polymorphic_amplicon>ACGGAAAATTCAAAAATAAAAACTGTCGAAATACCGTAACTCAATCAGTTTTGCTTTAAACTCAACAAAATTTGAATATATCAATTTCTCATCATGCGAGCTTCAAATTGAGTATAAACACGCCTAGGCTCCGCCCATTTTCAAAATTCGGAACCCATTGTGCATTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTAGTGCAAAGSCATTTTTGAATATGGAAACTATAACAGATGCAGATGAAAATTGCCTTACAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35165</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>155279</contig_pos>
        <strand></strand>
        <context>cctatctctt[T/C]tcaaagtttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTGATCATTTTCAGAAGTCGTTAGCTTACCTGTCAAGTTTCCTATCTCTT</left_flank>
        <right_flank>TCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCCAAAATCCTCCTCCTCTTCCTCTATTCGTACTTGGAAATATATCCATCCACATCCCCCCTCTTTTTCCCTATCCCACTATAATTCCTTTCGAAAATTCCATGATTCTTTTTTTCTCGAAAAATCCGTCTTCTTCTTTCGTTTCGTCGCTCCAATTTATTCGTCAATCTTTGCCAATGCGAAGTCAAACGGACGGTGAGAAGATTGAGCGCGAAAAATGGTGTGGGACGTCTTCTTCTTCTTTTTTGGGATAGATGGAAATTGGGAAAAAGGGGAGGAGAAGGAGGTTTGGTCGGAAATTTTAGAAGTCATCCTCAGAATGGAAAGAGGTTTCAAAATATTCAGAGTTCCATGGTTCTTACCGAGGTTTCATGAGATTCGTAGAATCTTTAAGCTGTCCGTAGCATACTGCCGCCCAGGCCCCTCTTGGCTGGATTTTCGGCGATTTTGATCATTTTCAGAAGTCGTTAGCTTACCTGTCAAGTTTCCTATCTCTTTTCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTATAGAATCTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTGTTTACGGTACTGTAAGTTTTTGGAATTTTGTAATATAGAAAACTTTCTAAGTTTTTCTACCCTTAAGCTGGTTTCAAAACTTTTTGAAACTCTCAAAAATTTTCAAAAATGCCAGAAAATGTCAAAAAATGCCGAAATTTCAAATTTTGAGAATATGACTCGAGACCGGAGAATTTTCTACTTCGACCGTTACCGTGATTTTTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATAT</canonical>
            <polymorphic>GCTCCAAAATCCTCCTCCTCTTCCTCTATTCGTACTTGGAAATATATCCATCCACATCCCCCCTCTTTTTCCCTATCCCACTATAATTCCTTTCGAAAATTCCATGATTCTTTTTTTCTCGAAAAATCCGTCTTCTTCTTTCGTTTCGTCGCTCCAATTTATTCGTCAATCTTTGCCAATGCGAAGTCAAACGGACGGTGAGAAGATTGAGCGCGAAAAATGGTGTGGGACGTCTTCTTCTTCTTTTTTGGGATAGATGGAAATTGGGAAAAAGGGGAGGAGAAGGAGGTTTGGTCGGAAATTTTAGAAGTCATCCTCAGAATGGAAAGAGGTTTCAAAATATTCAGAGTTCCATGGTTCTTACCGAGGTTTCATGAGATTCGTAGAATCTTTAAGCTGTCCGTAGCATACTGCCGCCCAGGCCCCTCTTGGCTGGATTTTCGGCGATTTTGATCATTTTCAGAAGTCGTTAGCTTACCTGTCAAGTTTCCTATCTCTTYTCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTATAGAATCTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTGTTTACGGTACTGTAAGTTTTTGGAATTTTGTAATATAGAAAACTTTCTAAGTTTTTCTACCCTTAAGCTGGTTTCAAAACTTTTTGAAACTCTCAAAAATTTTCAAAAATGCCAGAAAATGTCAAAAAATGCCGAAATTTCAAATTTTGAGAATATGACTCGAGACCGGAGAATTTTCTACTTCGACCGTTACCGTGATTTTTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTAAGCTGTCCGTAGCATA</pcr_primer_p1>
		<pcr_primer_p2>CAACTACGTATTCTTTTGGTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CTTTAAGCTGTCCGTAGCATACTGCCGCCCAGGCCCCTCTTGGCTGGATTTTCGGCGATTTTGATCATTTTCAGAAGTCGTTAGCTTACCTGTCAAGTTTCCTATCTCTTTTCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTATAGAATCTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTG</canonical_amplicon>
		<polymorphic_amplicon>CTTTAAGCTGTCCGTAGCATACTGCCGCCCAGGCCCCTCTTGGCTGGATTTTCGGCGATTTTGATCATTTTCAGAAGTCGTTAGCTTACCTGTCAAGTTTCCTATCTCTTYTCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTATAGAATCTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35166</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>155330</contig_pos>
        <strand></strand>
        <context>cattgcattt[A/T]trgaatcttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTT</left_flank>
        <right_flank>TAGAATCTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACATCCCCCCTCTTTTTCCCTATCCCACTATAATTCCTTTCGAAAATTCCATGATTCTTTTTTTCTCGAAAAATCCGTCTTCTTCTTTCGTTTCGTCGCTCCAATTTATTCGTCAATCTTTGCCAATGCGAAGTCAAACGGACGGTGAGAAGATTGAGCGCGAAAAATGGTGTGGGACGTCTTCTTCTTCTTTTTTGGGATAGATGGAAATTGGGAAAAAGGGGAGGAGAAGGAGGTTTGGTCGGAAATTTTAGAAGTCATCCTCAGAATGGAAAGAGGTTTCAAAATATTCAGAGTTCCATGGTTCTTACCGAGGTTTCATGAGATTCGTAGAATCTTTAAGCTGTCCGTAGCATACTGCCGCCCAGGCCCCTCTTGGCTGGATTTTCGGCGATTTTGATCATTTTCAGAAGTCGTTAGCTTACCTGTCAAGTTTCCTATCTCTTTTCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTATAGAATCTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTGTTTACGGTACTGTAAGTTTTTGGAATTTTGTAATATAGAAAACTTTCTAAGTTTTTCTACCCTTAAGCTGGTTTCAAAACTTTTTGAAACTCTCAAAAATTTTCAAAAATGCCAGAAAATGTCAAAAAATGCCGAAATTTCAAATTTTGAGAATATGACTCGAGACCGGAGAATTTTCTACTTCGACCGTTACCGTGATTTTTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCC</canonical>
            <polymorphic>CCACATCCCCCCTCTTTTTCCCTATCCCACTATAATTCCTTTCGAAAATTCCATGATTCTTTTTTTCTCGAAAAATCCGTCTTCTTCTTTCGTTTCGTCGCTCCAATTTATTCGTCAATCTTTGCCAATGCGAAGTCAAACGGACGGTGAGAAGATTGAGCGCGAAAAATGGTGTGGGACGTCTTCTTCTTCTTTTTTGGGATAGATGGAAATTGGGAAAAAGGGGAGGAGAAGGAGGTTTGGTCGGAAATTTTAGAAGTCATCCTCAGAATGGAAAGAGGTTTCAAAATATTCAGAGTTCCATGGTTCTTACCGAGGTTTCATGAGATTCGTAGAATCTTTAAGCTGTCCGTAGCATACTGCCGCCCAGGCCCCTCTTGGCTGGATTTTCGGCGATTTTGATCATTTTCAGAAGTCGTTAGCTTACCTGTCAAGTTTCCTATCTCTTTTCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTWTAGAATCTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTGTTTACGGTACTGTAAGTTTTTGGAATTTTGTAATATAGAAAACTTTCTAAGTTTTTCTACCCTTAAGCTGGTTTCAAAACTTTTTGAAACTCTCAAAAATTTTCAAAAATGCCAGAAAATGTCAAAAAATGCCGAAATTTCAAATTTTGAGAATATGACTCGAGACCGGAGAATTTTCTACTTCGACCGTTACCGTGATTTTTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTAAGCTGTCCGTAGCATA</pcr_primer_p1>
		<pcr_primer_p2>CAACTACGTATTCTTTTGGTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CTTTAAGCTGTCCGTAGCATACTGCCGCCCAGGCCCCTCTTGGCTGGATTTTCGGCGATTTTGATCATTTTCAGAAGTCGTTAGCTTACCTGTCAAGTTTCCTATCTCTTTTCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTATAGAATCTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTG</canonical_amplicon>
		<polymorphic_amplicon>CTTTAAGCTGTCCGTAGCATACTGCCGCCCAGGCCCCTCTTGGCTGGATTTTCGGCGATTTTGATCATTTTCAGAAGTCGTTAGCTTACCTGTCAAGTTTCCTATCTCTTTTCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTWTAGAATCTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35167</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>155332</contig_pos>
        <strand></strand>
        <context>ttgcatttwt[A/G]gaatcttttg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTAT</left_flank>
        <right_flank>GAATCTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATCCCCCCTCTTTTTCCCTATCCCACTATAATTCCTTTCGAAAATTCCATGATTCTTTTTTTCTCGAAAAATCCGTCTTCTTCTTTCGTTTCGTCGCTCCAATTTATTCGTCAATCTTTGCCAATGCGAAGTCAAACGGACGGTGAGAAGATTGAGCGCGAAAAATGGTGTGGGACGTCTTCTTCTTCTTTTTTGGGATAGATGGAAATTGGGAAAAAGGGGAGGAGAAGGAGGTTTGGTCGGAAATTTTAGAAGTCATCCTCAGAATGGAAAGAGGTTTCAAAATATTCAGAGTTCCATGGTTCTTACCGAGGTTTCATGAGATTCGTAGAATCTTTAAGCTGTCCGTAGCATACTGCCGCCCAGGCCCCTCTTGGCTGGATTTTCGGCGATTTTGATCATTTTCAGAAGTCGTTAGCTTACCTGTCAAGTTTCCTATCTCTTTTCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTATAGAATCTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTGTTTACGGTACTGTAAGTTTTTGGAATTTTGTAATATAGAAAACTTTCTAAGTTTTTCTACCCTTAAGCTGGTTTCAAAACTTTTTGAAACTCTCAAAAATTTTCAAAAATGCCAGAAAATGTCAAAAAATGCCGAAATTTCAAATTTTGAGAATATGACTCGAGACCGGAGAATTTTCTACTTCGACCGTTACCGTGATTTTTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAG</canonical>
            <polymorphic>ACATCCCCCCTCTTTTTCCCTATCCCACTATAATTCCTTTCGAAAATTCCATGATTCTTTTTTTCTCGAAAAATCCGTCTTCTTCTTTCGTTTCGTCGCTCCAATTTATTCGTCAATCTTTGCCAATGCGAAGTCAAACGGACGGTGAGAAGATTGAGCGCGAAAAATGGTGTGGGACGTCTTCTTCTTCTTTTTTGGGATAGATGGAAATTGGGAAAAAGGGGAGGAGAAGGAGGTTTGGTCGGAAATTTTAGAAGTCATCCTCAGAATGGAAAGAGGTTTCAAAATATTCAGAGTTCCATGGTTCTTACCGAGGTTTCATGAGATTCGTAGAATCTTTAAGCTGTCCGTAGCATACTGCCGCCCAGGCCCCTCTTGGCTGGATTTTCGGCGATTTTGATCATTTTCAGAAGTCGTTAGCTTACCTGTCAAGTTTCCTATCTCTTTTCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTATRGAATCTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTGTTTACGGTACTGTAAGTTTTTGGAATTTTGTAATATAGAAAACTTTCTAAGTTTTTCTACCCTTAAGCTGGTTTCAAAACTTTTTGAAACTCTCAAAAATTTTCAAAAATGCCAGAAAATGTCAAAAAATGCCGAAATTTCAAATTTTGAGAATATGACTCGAGACCGGAGAATTTTCTACTTCGACCGTTACCGTGATTTTTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTAAGCTGTCCGTAGCATA</pcr_primer_p1>
		<pcr_primer_p2>CAACTACGTATTCTTTTGGTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CTTTAAGCTGTCCGTAGCATACTGCCGCCCAGGCCCCTCTTGGCTGGATTTTCGGCGATTTTGATCATTTTCAGAAGTCGTTAGCTTACCTGTCAAGTTTCCTATCTCTTTTCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTATAGAATCTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTG</canonical_amplicon>
		<polymorphic_amplicon>CTTTAAGCTGTCCGTAGCATACTGCCGCCCAGGCCCCTCTTGGCTGGATTTTCGGCGATTTTGATCATTTTCAGAAGTCGTTAGCTTACCTGTCAAGTTTCCTATCTCTTTTCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTATRGAATCTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35168</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>155350</contig_pos>
        <strand></strand>
        <context>ttgaaaattc[C/G]tagtttttca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGACAGATCTAGATTGAAAACATTGCATTTATAGAATCTTTTGAAAATTC</left_flank>
        <right_flank>TAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTATCCCACTATAATTCCTTTCGAAAATTCCATGATTCTTTTTTTCTCGAAAAATCCGTCTTCTTCTTTCGTTTCGTCGCTCCAATTTATTCGTCAATCTTTGCCAATGCGAAGTCAAACGGACGGTGAGAAGATTGAGCGCGAAAAATGGTGTGGGACGTCTTCTTCTTCTTTTTTGGGATAGATGGAAATTGGGAAAAAGGGGAGGAGAAGGAGGTTTGGTCGGAAATTTTAGAAGTCATCCTCAGAATGGAAAGAGGTTTCAAAATATTCAGAGTTCCATGGTTCTTACCGAGGTTTCATGAGATTCGTAGAATCTTTAAGCTGTCCGTAGCATACTGCCGCCCAGGCCCCTCTTGGCTGGATTTTCGGCGATTTTGATCATTTTCAGAAGTCGTTAGCTTACCTGTCAAGTTTCCTATCTCTTTTCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTATAGAATCTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTGTTTACGGTACTGTAAGTTTTTGGAATTTTGTAATATAGAAAACTTTCTAAGTTTTTCTACCCTTAAGCTGGTTTCAAAACTTTTTGAAACTCTCAAAAATTTTCAAAAATGCCAGAAAATGTCAAAAAATGCCGAAATTTCAAATTTTGAGAATATGACTCGAGACCGGAGAATTTTCTACTTCGACCGTTACCGTGATTTTTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAGGAGCAAGATTATTCAGAG</canonical>
            <polymorphic>CCTATCCCACTATAATTCCTTTCGAAAATTCCATGATTCTTTTTTTCTCGAAAAATCCGTCTTCTTCTTTCGTTTCGTCGCTCCAATTTATTCGTCAATCTTTGCCAATGCGAAGTCAAACGGACGGTGAGAAGATTGAGCGCGAAAAATGGTGTGGGACGTCTTCTTCTTCTTTTTTGGGATAGATGGAAATTGGGAAAAAGGGGAGGAGAAGGAGGTTTGGTCGGAAATTTTAGAAGTCATCCTCAGAATGGAAAGAGGTTTCAAAATATTCAGAGTTCCATGGTTCTTACCGAGGTTTCATGAGATTCGTAGAATCTTTAAGCTGTCCGTAGCATACTGCCGCCCAGGCCCCTCTTGGCTGGATTTTCGGCGATTTTGATCATTTTCAGAAGTCGTTAGCTTACCTGTCAAGTTTCCTATCTCTTTTCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTATAGAATCTTTTGAAAATTCSTAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTGTTTACGGTACTGTAAGTTTTTGGAATTTTGTAATATAGAAAACTTTCTAAGTTTTTCTACCCTTAAGCTGGTTTCAAAACTTTTTGAAACTCTCAAAAATTTTCAAAAATGCCAGAAAATGTCAAAAAATGCCGAAATTTCAAATTTTGAGAATATGACTCGAGACCGGAGAATTTTCTACTTCGACCGTTACCGTGATTTTTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAGGAGCAAGATTATTCAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 458 42</canonical_bands>
                <polymorphic_bands>542 458</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTAAGCTGTCCGTAGCATA</pcr_primer_p1>
		<pcr_primer_p2>CAACTACGTATTCTTTTGGTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CTTTAAGCTGTCCGTAGCATACTGCCGCCCAGGCCCCTCTTGGCTGGATTTTCGGCGATTTTGATCATTTTCAGAAGTCGTTAGCTTACCTGTCAAGTTTCCTATCTCTTTTCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTATAGAATCTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTG</canonical_amplicon>
		<polymorphic_amplicon>CTTTAAGCTGTCCGTAGCATACTGCCGCCCAGGCCCCTCTTGGCTGGATTTTCGGCGATTTTGATCATTTTCAGAAGTCGTTAGCTTACCTGTCAAGTTTCCTATCTCTTTTCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTATAGAATCTTTTGAAAATTCSTAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35169</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>155475</contig_pos>
        <strand></strand>
        <context>actttctaag[T/A]ttttctaccc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTACGGTACTGTAAGTTTTTGGAATTTTGTAATATAGAAAACTTTCTAAG</left_flank>
        <right_flank>TTTTCTACCCTTAAGCTGGTTTCAAAACTTTTTGAAACTCTCAAAAATTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGAGAAGATTGAGCGCGAAAAATGGTGTGGGACGTCTTCTTCTTCTTTTTTGGGATAGATGGAAATTGGGAAAAAGGGGAGGAGAAGGAGGTTTGGTCGGAAATTTTAGAAGTCATCCTCAGAATGGAAAGAGGTTTCAAAATATTCAGAGTTCCATGGTTCTTACCGAGGTTTCATGAGATTCGTAGAATCTTTAAGCTGTCCGTAGCATACTGCCGCCCAGGCCCCTCTTGGCTGGATTTTCGGCGATTTTGATCATTTTCAGAAGTCGTTAGCTTACCTGTCAAGTTTCCTATCTCTTTTCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTATAGAATCTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTGTTTACGGTACTGTAAGTTTTTGGAATTTTGTAATATAGAAAACTTTCTAAGTTTTTCTACCCTTAAGCTGGTTTCAAAACTTTTTGAAACTCTCAAAAATTTTCAAAAATGCCAGAAAATGTCAAAAAATGCCGAAATTTCAAATTTTGAGAATATGACTCGAGACCGGAGAATTTTCTACTTCGACCGTTACCGTGATTTTTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAGGAGCAAGATTATTCAGAGTATGAATCGAACTCCACAGGATTTTGGGCTTCTGGTATTCTGTTGTAGCTCAAAAAACTCTAAAATCGATTTTGTCCTTTTGCTCTGGCTCTCCGGATCCTGGCATTCTGGTATAGCTCTGTTCT</canonical>
            <polymorphic>GGTGAGAAGATTGAGCGCGAAAAATGGTGTGGGACGTCTTCTTCTTCTTTTTTGGGATAGATGGAAATTGGGAAAAAGGGGAGGAGAAGGAGGTTTGGTCGGAAATTTTAGAAGTCATCCTCAGAATGGAAAGAGGTTTCAAAATATTCAGAGTTCCATGGTTCTTACCGAGGTTTCATGAGATTCGTAGAATCTTTAAGCTGTCCGTAGCATACTGCCGCCCAGGCCCCTCTTGGCTGGATTTTCGGCGATTTTGATCATTTTCAGAAGTCGTTAGCTTACCTGTCAAGTTTCCTATCTCTTTTCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTATAGAATCTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTGTTTACGGTACTGTAAGTTTTTGGAATTTTGTAATATAGAAAACTTTCTAAGWTTTTCTACCCTTAAGCTGGTTTCAAAACTTTTTGAAACTCTCAAAAATTTTCAAAAATGCCAGAAAATGTCAAAAAATGCCGAAATTTCAAATTTTGAGAATATGACTCGAGACCGGAGAATTTTCTACTTCGACCGTTACCGTGATTTTTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAGGAGCAAGATTATTCAGAGTATGAATCGAACTCCACAGGATTTTGGGCTTCTGGTATTCTGTTGTAGCTCAAAAAACTCTAAAATCGATTTTGTCCTTTTGCTCTGGCTCTCCGGATCCTGGCATTCTGGTATAGCTCTGTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAATACGTAGTTGTTTACGGTACT</pcr_primer_p1>
		<pcr_primer_p2>TAAGTCTTCCTTGGCACTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>AGAATACGTAGTTGTTTACGGTACTGTAAGTTTTTGGAATTTTGTAATATAGAAAACTTTCTAAGTTTTTCTACCCTTAAGCTGGTTTCAAAACTTTTTGAAACTCTCAAAAATTTTCAAAAATGCCAGAAAATGTCAAAAAATGCCGAAATTTCAAATTTTGAGAATATGACTCGAGACCGGAGAATTTTCTACTTCGACCGTTACCGTGATTTTTTAAGTGCCAAGGAAGACTTA</canonical_amplicon>
		<polymorphic_amplicon>AGAATACGTAGTTGTTTACGGTACTGTAAGTTTTTGGAATTTTGTAATATAGAAAACTTTCTAAGWTTTTCTACCCTTAAGCTGGTTTCAAAACTTTTTGAAACTCTCAAAAATTTTCAAAAATGCCAGAAAATGTCAAAAAATGCCGAAATTTCAAATTTTGAGAATATGACTCGAGACCGGAGAATTTTCTACTTCGACCGTTACCGTGATTTTTTAAGTGCCAAGGAAGACTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35170</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>155615</contig_pos>
        <strand>+</strand>
        <context>ttcgaccGTT[A/T]CCGTGATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATTTTGAGAATATGACTCGAGACCGGAGAATTTTCTACTTCGACCGTT</left_flank>
        <right_flank>CCGTGATTTTTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATATTCAGAGTTCCATGGTTCTTACCGAGGTTTCATGAGATTCGTAGAATCTTTAAGCTGTCCGTAGCATACTGCCGCCCAGGCCCCTCTTGGCTGGATTTTCGGCGATTTTGATCATTTTCAGAAGTCGTTAGCTTACCTGTCAAGTTTCCTATCTCTTTTCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTATAGAATCTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTGTTTACGGTACTGTAAGTTTTTGGAATTTTGTAATATAGAAAACTTTCTAAGTTTTTCTACCCTTAAGCTGGTTTCAAAACTTTTTGAAACTCTCAAAAATTTTCAAAAATGCCAGAAAATGTCAAAAAATGCCGAAATTTCAAATTTTGAGAATATGACTCGAGACCGGAGAATTTTCTACTTCGACCGTTACCGTGATTTTTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAGGAGCAAGATTATTCAGAGTATGAATCGAACTCCACAGGATTTTGGGCTTCTGGTATTCTGTTGTAGCTCAAAAAACTCTAAAATCGATTTTGTCCTTTTGCTCTGGCTCTCCGGATCCTGGCATTCTGGTATAGCTCTGTTCTTCCCTGACTTCTTGATTCTTCGATTCCCCAAATAACGAAAAACAATCGTCCTCCTCCGCACCTTGCCATCAGATTTCCACTACTCTCTCTATAATTTTCCAGTGTGAAAATATCGAATTCGAGCTCTCCTCTCTGTCTTC</canonical>
            <polymorphic>AAAATATTCAGAGTTCCATGGTTCTTACCGAGGTTTCATGAGATTCGTAGAATCTTTAAGCTGTCCGTAGCATACTGCCGCCCAGGCCCCTCTTGGCTGGATTTTCGGCGATTTTGATCATTTTCAGAAGTCGTTAGCTTACCTGTCAAGTTTCCTATCTCTTTTCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTATAGAATCTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTGTTTACGGTACTGTAAGTTTTTGGAATTTTGTAATATAGAAAACTTTCTAAGTTTTTCTACCCTTAAGCTGGTTTCAAAACTTTTTGAAACTCTCAAAAATTTTCAAAAATGCCAGAAAATGTCAAAAAATGCCGAAATTTCAAATTTTGAGAATATGACTCGAGACCGGAGAATTTTCTACTTCGACCGTTWCCGTGATTTTTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAGGAGCAAGATTATTCAGAGTATGAATCGAACTCCACAGGATTTTGGGCTTCTGGTATTCTGTTGTAGCTCAAAAAACTCTAAAATCGATTTTGTCCTTTTGCTCTGGCTCTCCGGATCCTGGCATTCTGGTATAGCTCTGTTCTTCCCTGACTTCTTGATTCTTCGATTCCCCAAATAACGAAAAACAATCGTCCTCCTCCGCACCTTGCCATCAGATTTCCACTACTCTCTCTATAATTTTCCAGTGTGAAAATATCGAATTCGAGCTCTCCTCTCTGTCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>498 314 177 6 5</canonical_bands>
                <polymorphic_bands>504 314 177 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTACTGTAAGTTTTTGGAATTTT</pcr_primer_p1>
		<pcr_primer_p2>CAAGCTTAGGGCATATTGAC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GGTACTGTAAGTTTTTGGAATTTTGTAATATAGAAAACTTTCTAAGTTTTTCTACCCTTAAGCTGGTTTCAAAACTTTTTGAAACTCTCAAAAATTTTCAAAAATGCCAGAAAATGTCAAAAAATGCCGAAATTTCAAATTTTGAGAATATGACTCGAGACCGGAGAATTTTCTACTTCGACCGTTACCGTGATTTTTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTG</canonical_amplicon>
		<polymorphic_amplicon>GGTACTGTAAGTTTTTGGAATTTTGTAATATAGAAAACTTTCTAAGTTTTTCTACCCTTAAGCTGGTTTCAAAACTTTTTGAAACTCTCAAAAATTTTCAAAAATGCCAGAAAATGTCAAAAAATGCCGAAATTTCAAATTTTGAGAATATGACTCGAGACCGGAGAATTTTCTACTTCGACCGTTWCCGTGATTTTTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35171</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>155686</contig_pos>
        <strand>+</strand>
        <context>AGATCCGCTA[C/T]CYCAATAGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTA</left_flank>
        <right_flank>CCCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATACTGCCGCCCAGGCCCCTCTTGGCTGGATTTTCGGCGATTTTGATCATTTTCAGAAGTCGTTAGCTTACCTGTCAAGTTTCCTATCTCTTTTCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTATAGAATCTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTGTTTACGGTACTGTAAGTTTTTGGAATTTTGTAATATAGAAAACTTTCTAAGTTTTTCTACCCTTAAGCTGGTTTCAAAACTTTTTGAAACTCTCAAAAATTTTCAAAAATGCCAGAAAATGTCAAAAAATGCCGAAATTTCAAATTTTGAGAATATGACTCGAGACCGGAGAATTTTCTACTTCGACCGTTACCGTGATTTTTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAGGAGCAAGATTATTCAGAGTATGAATCGAACTCCACAGGATTTTGGGCTTCTGGTATTCTGTTGTAGCTCAAAAAACTCTAAAATCGATTTTGTCCTTTTGCTCTGGCTCTCCGGATCCTGGCATTCTGGTATAGCTCTGTTCTTCCCTGACTTCTTGATTCTTCGATTCCCCAAATAACGAAAAACAATCGTCCTCCTCCGCACCTTGCCATCAGATTTCCACTACTCTCTCTATAATTTTCCAGTGTGAAAATATCGAATTCGAGCTCTCCTCTCTGTCTTCTTTTCCCGCTATTTTTTCCTTCTAGAACTCCTAATTACAGGCCTTGTTTGAGTCCTGTTGGCTCCTTCCCT</canonical>
            <polymorphic>ATACTGCCGCCCAGGCCCCTCTTGGCTGGATTTTCGGCGATTTTGATCATTTTCAGAAGTCGTTAGCTTACCTGTCAAGTTTCCTATCTCTTTTCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTATAGAATCTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTGTTTACGGTACTGTAAGTTTTTGGAATTTTGTAATATAGAAAACTTTCTAAGTTTTTCTACCCTTAAGCTGGTTTCAAAACTTTTTGAAACTCTCAAAAATTTTCAAAAATGCCAGAAAATGTCAAAAAATGCCGAAATTTCAAATTTTGAGAATATGACTCGAGACCGGAGAATTTTCTACTTCGACCGTTACCGTGATTTTTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTAYCCCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAGGAGCAAGATTATTCAGAGTATGAATCGAACTCCACAGGATTTTGGGCTTCTGGTATTCTGTTGTAGCTCAAAAAACTCTAAAATCGATTTTGTCCTTTTGCTCTGGCTCTCCGGATCCTGGCATTCTGGTATAGCTCTGTTCTTCCCTGACTTCTTGATTCTTCGATTCCCCAAATAACGAAAAACAATCGTCCTCCTCCGCACCTTGCCATCAGATTTCCACTACTCTCTCTATAATTTTCCAGTGTGAAAATATCGAATTCGAGCTCTCCTCTCTGTCTTCTTTTCCCGCTATTTTTTCCTTCTAGAACTCCTAATTACAGGCCTTGTTTGAGTCCTGTTGGCTCCTTCCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAAGTGCCAAGGAAGACTTA</pcr_primer_p1>
		<pcr_primer_p2>TGGAGTTCGATTCATACTCTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAGGAGCAAGATTATTCAGAGTATGAATCGAACTCCA</canonical_amplicon>
		<polymorphic_amplicon>TTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTAYCCCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAGGAGCAAGATTATTCAGAGTATGAATCGAACTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35172</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>155688</contig_pos>
        <strand>+</strand>
        <context>ATCCGCTAYC[C/T]CAATAGATAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATC</left_flank>
        <right_flank>CAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGCCGCCCAGGCCCCTCTTGGCTGGATTTTCGGCGATTTTGATCATTTTCAGAAGTCGTTAGCTTACCTGTCAAGTTTCCTATCTCTTTTCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTATAGAATCTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTGTTTACGGTACTGTAAGTTTTTGGAATTTTGTAATATAGAAAACTTTCTAAGTTTTTCTACCCTTAAGCTGGTTTCAAAACTTTTTGAAACTCTCAAAAATTTTCAAAAATGCCAGAAAATGTCAAAAAATGCCGAAATTTCAAATTTTGAGAATATGACTCGAGACCGGAGAATTTTCTACTTCGACCGTTACCGTGATTTTTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAGGAGCAAGATTATTCAGAGTATGAATCGAACTCCACAGGATTTTGGGCTTCTGGTATTCTGTTGTAGCTCAAAAAACTCTAAAATCGATTTTGTCCTTTTGCTCTGGCTCTCCGGATCCTGGCATTCTGGTATAGCTCTGTTCTTCCCTGACTTCTTGATTCTTCGATTCCCCAAATAACGAAAAACAATCGTCCTCCTCCGCACCTTGCCATCAGATTTCCACTACTCTCTCTATAATTTTCCAGTGTGAAAATATCGAATTCGAGCTCTCCTCTCTGTCTTCTTTTCCCGCTATTTTTTCCTTCTAGAACTCCTAATTACAGGCCTTGTTTGAGTCCTGTTGGCTCCTTCCCTCT</canonical>
            <polymorphic>ACTGCCGCCCAGGCCCCTCTTGGCTGGATTTTCGGCGATTTTGATCATTTTCAGAAGTCGTTAGCTTACCTGTCAAGTTTCCTATCTCTTTTCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTATAGAATCTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTGTTTACGGTACTGTAAGTTTTTGGAATTTTGTAATATAGAAAACTTTCTAAGTTTTTCTACCCTTAAGCTGGTTTCAAAACTTTTTGAAACTCTCAAAAATTTTCAAAAATGCCAGAAAATGTCAAAAAATGCCGAAATTTCAAATTTTGAGAATATGACTCGAGACCGGAGAATTTTCTACTTCGACCGTTACCGTGATTTTTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCYCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAGGAGCAAGATTATTCAGAGTATGAATCGAACTCCACAGGATTTTGGGCTTCTGGTATTCTGTTGTAGCTCAAAAAACTCTAAAATCGATTTTGTCCTTTTGCTCTGGCTCTCCGGATCCTGGCATTCTGGTATAGCTCTGTTCTTCCCTGACTTCTTGATTCTTCGATTCCCCAAATAACGAAAAACAATCGTCCTCCTCCGCACCTTGCCATCAGATTTCCACTACTCTCTCTATAATTTTCCAGTGTGAAAATATCGAATTCGAGCTCTCCTCTCTGTCTTCTTTTCCCGCTATTTTTTCCTTCTAGAACTCCTAATTACAGGCCTTGTTTGAGTCCTGTTGGCTCCTTCCCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAAGTGCCAAGGAAGACTTA</pcr_primer_p1>
		<pcr_primer_p2>TGGAGTTCGATTCATACTCTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAGGAGCAAGATTATTCAGAGTATGAATCGAACTCCA</canonical_amplicon>
		<polymorphic_amplicon>TTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCYCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAGGAGCAAGATTATTCAGAGTATGAATCGAACTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35173</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>155701</contig_pos>
        <strand>+</strand>
        <context>ATAGATATAA[A/C]CTATCRATGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAA</left_flank>
        <right_flank>CTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCCTCTTGGCTGGATTTTCGGCGATTTTGATCATTTTCAGAAGTCGTTAGCTTACCTGTCAAGTTTCCTATCTCTTTTCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTATAGAATCTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTGTTTACGGTACTGTAAGTTTTTGGAATTTTGTAATATAGAAAACTTTCTAAGTTTTTCTACCCTTAAGCTGGTTTCAAAACTTTTTGAAACTCTCAAAAATTTTCAAAAATGCCAGAAAATGTCAAAAAATGCCGAAATTTCAAATTTTGAGAATATGACTCGAGACCGGAGAATTTTCTACTTCGACCGTTACCGTGATTTTTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAGGAGCAAGATTATTCAGAGTATGAATCGAACTCCACAGGATTTTGGGCTTCTGGTATTCTGTTGTAGCTCAAAAAACTCTAAAATCGATTTTGTCCTTTTGCTCTGGCTCTCCGGATCCTGGCATTCTGGTATAGCTCTGTTCTTCCCTGACTTCTTGATTCTTCGATTCCCCAAATAACGAAAAACAATCGTCCTCCTCCGCACCTTGCCATCAGATTTCCACTACTCTCTCTATAATTTTCCAGTGTGAAAATATCGAATTCGAGCTCTCCTCTCTGTCTTCTTTTCCCGCTATTTTTTCCTTCTAGAACTCCTAATTACAGGCCTTGTTTGAGTCCTGTTGGCTCCTTCCCTCTCTCTTTCGAGCTC</canonical>
            <polymorphic>CCCCTCTTGGCTGGATTTTCGGCGATTTTGATCATTTTCAGAAGTCGTTAGCTTACCTGTCAAGTTTCCTATCTCTTTTCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTATAGAATCTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTGTTTACGGTACTGTAAGTTTTTGGAATTTTGTAATATAGAAAACTTTCTAAGTTTTTCTACCCTTAAGCTGGTTTCAAAACTTTTTGAAACTCTCAAAAATTTTCAAAAATGCCAGAAAATGTCAAAAAATGCCGAAATTTCAAATTTTGAGAATATGACTCGAGACCGGAGAATTTTCTACTTCGACCGTTACCGTGATTTTTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAAMCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAGGAGCAAGATTATTCAGAGTATGAATCGAACTCCACAGGATTTTGGGCTTCTGGTATTCTGTTGTAGCTCAAAAAACTCTAAAATCGATTTTGTCCTTTTGCTCTGGCTCTCCGGATCCTGGCATTCTGGTATAGCTCTGTTCTTCCCTGACTTCTTGATTCTTCGATTCCCCAAATAACGAAAAACAATCGTCCTCCTCCGCACCTTGCCATCAGATTTCCACTACTCTCTCTATAATTTTCCAGTGTGAAAATATCGAATTCGAGCTCTCCTCTCTGTCTTCTTTTCCCGCTATTTTTTCCTTCTAGAACTCCTAATTACAGGCCTTGTTTGAGTCCTGTTGGCTCCTTCCCTCTCTCTTTCGAGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAAGTGCCAAGGAAGACTTA</pcr_primer_p1>
		<pcr_primer_p2>TGGAGTTCGATTCATACTCTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAGGAGCAAGATTATTCAGAGTATGAATCGAACTCCA</canonical_amplicon>
		<polymorphic_amplicon>TTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAAMCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAGGAGCAAGATTATTCAGAGTATGAATCGAACTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35174</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>155707</contig_pos>
        <strand>+</strand>
        <context>ATAAMCTATC[A/G]ATGATTTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATC</left_flank>
        <right_flank>ATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGCTGGATTTTCGGCGATTTTGATCATTTTCAGAAGTCGTTAGCTTACCTGTCAAGTTTCCTATCTCTTTTCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTATAGAATCTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTGTTTACGGTACTGTAAGTTTTTGGAATTTTGTAATATAGAAAACTTTCTAAGTTTTTCTACCCTTAAGCTGGTTTCAAAACTTTTTGAAACTCTCAAAAATTTTCAAAAATGCCAGAAAATGTCAAAAAATGCCGAAATTTCAAATTTTGAGAATATGACTCGAGACCGGAGAATTTTCTACTTCGACCGTTACCGTGATTTTTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAGGAGCAAGATTATTCAGAGTATGAATCGAACTCCACAGGATTTTGGGCTTCTGGTATTCTGTTGTAGCTCAAAAAACTCTAAAATCGATTTTGTCCTTTTGCTCTGGCTCTCCGGATCCTGGCATTCTGGTATAGCTCTGTTCTTCCCTGACTTCTTGATTCTTCGATTCCCCAAATAACGAAAAACAATCGTCCTCCTCCGCACCTTGCCATCAGATTTCCACTACTCTCTCTATAATTTTCCAGTGTGAAAATATCGAATTCGAGCTCTCCTCTCTGTCTTCTTTTCCCGCTATTTTTTCCTTCTAGAACTCCTAATTACAGGCCTTGTTTGAGTCCTGTTGGCTCCTTCCCTCTCTCTTTCGAGCTCTTTCGA</canonical>
            <polymorphic>TTGGCTGGATTTTCGGCGATTTTGATCATTTTCAGAAGTCGTTAGCTTACCTGTCAAGTTTCCTATCTCTTTTCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTATAGAATCTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTGTTTACGGTACTGTAAGTTTTTGGAATTTTGTAATATAGAAAACTTTCTAAGTTTTTCTACCCTTAAGCTGGTTTCAAAACTTTTTGAAACTCTCAAAAATTTTCAAAAATGCCAGAAAATGTCAAAAAATGCCGAAATTTCAAATTTTGAGAATATGACTCGAGACCGGAGAATTTTCTACTTCGACCGTTACCGTGATTTTTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATCRATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAGGAGCAAGATTATTCAGAGTATGAATCGAACTCCACAGGATTTTGGGCTTCTGGTATTCTGTTGTAGCTCAAAAAACTCTAAAATCGATTTTGTCCTTTTGCTCTGGCTCTCCGGATCCTGGCATTCTGGTATAGCTCTGTTCTTCCCTGACTTCTTGATTCTTCGATTCCCCAAATAACGAAAAACAATCGTCCTCCTCCGCACCTTGCCATCAGATTTCCACTACTCTCTCTATAATTTTCCAGTGTGAAAATATCGAATTCGAGCTCTCCTCTCTGTCTTCTTTTCCCGCTATTTTTTCCTTCTAGAACTCCTAATTACAGGCCTTGTTTGAGTCCTGTTGGCTCCTTCCCTCTCTCTTTCGAGCTCTTTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>498 291 211</canonical_bands>
                <polymorphic_bands>709 291</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>377 152 100 99 93 79 59 23 10 6 2</canonical_bands>
                <polymorphic_bands>377 251 100 93 79 59 23 10 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAAGTGCCAAGGAAGACTTA</pcr_primer_p1>
		<pcr_primer_p2>TGGAGTTCGATTCATACTCTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAGGAGCAAGATTATTCAGAGTATGAATCGAACTCCA</canonical_amplicon>
		<polymorphic_amplicon>TTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATCRATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAGGAGCAAGATTATTCAGAGTATGAATCGAACTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35175</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>155723</contig_pos>
        <strand>+</strand>
        <context>TTTTCCCCAT[A/G]TTTCTTGATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAAGATCCGCTATCCCAATAGATATAACCTATCGATGATTTTTCCCCAT</left_flank>
        <right_flank>TTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATTTTGATCATTTTCAGAAGTCGTTAGCTTACCTGTCAAGTTTCCTATCTCTTTTCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTATAGAATCTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTGTTTACGGTACTGTAAGTTTTTGGAATTTTGTAATATAGAAAACTTTCTAAGTTTTTCTACCCTTAAGCTGGTTTCAAAACTTTTTGAAACTCTCAAAAATTTTCAAAAATGCCAGAAAATGTCAAAAAATGCCGAAATTTCAAATTTTGAGAATATGACTCGAGACCGGAGAATTTTCTACTTCGACCGTTACCGTGATTTTTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAGGAGCAAGATTATTCAGAGTATGAATCGAACTCCACAGGATTTTGGGCTTCTGGTATTCTGTTGTAGCTCAAAAAACTCTAAAATCGATTTTGTCCTTTTGCTCTGGCTCTCCGGATCCTGGCATTCTGGTATAGCTCTGTTCTTCCCTGACTTCTTGATTCTTCGATTCCCCAAATAACGAAAAACAATCGTCCTCCTCCGCACCTTGCCATCAGATTTCCACTACTCTCTCTATAATTTTCCAGTGTGAAAATATCGAATTCGAGCTCTCCTCTCTGTCTTCTTTTCCCGCTATTTTTTCCTTCTAGAACTCCTAATTACAGGCCTTGTTTGAGTCCTGTTGGCTCCTTCCCTCTCTCTTTCGAGCTCTTTCGAGCTTCTCCTCTAACCA</canonical>
            <polymorphic>CGATTTTGATCATTTTCAGAAGTCGTTAGCTTACCTGTCAAGTTTCCTATCTCTTTTCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTATAGAATCTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTGTTTACGGTACTGTAAGTTTTTGGAATTTTGTAATATAGAAAACTTTCTAAGTTTTTCTACCCTTAAGCTGGTTTCAAAACTTTTTGAAACTCTCAAAAATTTTCAAAAATGCCAGAAAATGTCAAAAAATGCCGAAATTTCAAATTTTGAGAATATGACTCGAGACCGGAGAATTTTCTACTTCGACCGTTACCGTGATTTTTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATCGATGATTTTTCCCCATRTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAGGAGCAAGATTATTCAGAGTATGAATCGAACTCCACAGGATTTTGGGCTTCTGGTATTCTGTTGTAGCTCAAAAAACTCTAAAATCGATTTTGTCCTTTTGCTCTGGCTCTCCGGATCCTGGCATTCTGGTATAGCTCTGTTCTTCCCTGACTTCTTGATTCTTCGATTCCCCAAATAACGAAAAACAATCGTCCTCCTCCGCACCTTGCCATCAGATTTCCACTACTCTCTCTATAATTTTCCAGTGTGAAAATATCGAATTCGAGCTCTCCTCTCTGTCTTCTTTTCCCGCTATTTTTTCCTTCTAGAACTCCTAATTACAGGCCTTGTTTGAGTCCTGTTGGCTCCTTCCCTCTCTCTTTCGAGCTCTTTCGAGCTTCTCCTCTAACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>497 412 51 40</canonical_bands>
                <polymorphic_bands>537 412 51</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAAGTGCCAAGGAAGACTTA</pcr_primer_p1>
		<pcr_primer_p2>TGGAGTTCGATTCATACTCTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAGGAGCAAGATTATTCAGAGTATGAATCGAACTCCA</canonical_amplicon>
		<polymorphic_amplicon>TTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATCGATGATTTTTCCCCATRTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAGGAGCAAGATTATTCAGAGTATGAATCGAACTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35176</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>155759</contig_pos>
        <strand>+</strand>
        <context>CGGTTAGAAT[C/T]CATGTAAATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAAT</left_flank>
        <right_flank>CATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCAAGTTTCCTATCTCTTTTCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTATAGAATCTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTGTTTACGGTACTGTAAGTTTTTGGAATTTTGTAATATAGAAAACTTTCTAAGTTTTTCTACCCTTAAGCTGGTTTCAAAACTTTTTGAAACTCTCAAAAATTTTCAAAAATGCCAGAAAATGTCAAAAAATGCCGAAATTTCAAATTTTGAGAATATGACTCGAGACCGGAGAATTTTCTACTTCGACCGTTACCGTGATTTTTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAGGAGCAAGATTATTCAGAGTATGAATCGAACTCCACAGGATTTTGGGCTTCTGGTATTCTGTTGTAGCTCAAAAAACTCTAAAATCGATTTTGTCCTTTTGCTCTGGCTCTCCGGATCCTGGCATTCTGGTATAGCTCTGTTCTTCCCTGACTTCTTGATTCTTCGATTCCCCAAATAACGAAAAACAATCGTCCTCCTCCGCACCTTGCCATCAGATTTCCACTACTCTCTCTATAATTTTCCAGTGTGAAAATATCGAATTCGAGCTCTCCTCTCTGTCTTCTTTTCCCGCTATTTTTTCCTTCTAGAACTCCTAATTACAGGCCTTGTTTGAGTCCTGTTGGCTCCTTCCCTCTCTCTTTCGAGCTCTTTCGAGCTTCTCCTCTAACCAATTATTAAGAATCTATACACGAATCTCCCCTCCTTC</canonical>
            <polymorphic>GTCAAGTTTCCTATCTCTTTTCAAAGTTTTGAAGAACGTAAGACAGATCTAGATTGAAAACATTGCATTTATAGAATCTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCCGATTTCTGAAAGACACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTGTTTACGGTACTGTAAGTTTTTGGAATTTTGTAATATAGAAAACTTTCTAAGTTTTTCTACCCTTAAGCTGGTTTCAAAACTTTTTGAAACTCTCAAAAATTTTCAAAAATGCCAGAAAATGTCAAAAAATGCCGAAATTTCAAATTTTGAGAATATGACTCGAGACCGGAGAATTTTCTACTTCGACCGTTACCGTGATTTTTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATYCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAGGAGCAAGATTATTCAGAGTATGAATCGAACTCCACAGGATTTTGGGCTTCTGGTATTCTGTTGTAGCTCAAAAAACTCTAAAATCGATTTTGTCCTTTTGCTCTGGCTCTCCGGATCCTGGCATTCTGGTATAGCTCTGTTCTTCCCTGACTTCTTGATTCTTCGATTCCCCAAATAACGAAAAACAATCGTCCTCCTCCGCACCTTGCCATCAGATTTCCACTACTCTCTCTATAATTTTCCAGTGTGAAAATATCGAATTCGAGCTCTCCTCTCTGTCTTCTTTTCCCGCTATTTTTTCCTTCTAGAACTCCTAATTACAGGCCTTGTTTGAGTCCTGTTGGCTCCTTCCCTCTCTCTTTCGAGCTCTTTCGAGCTTCTCCTCTAACCAATTATTAAGAATCTATACACGAATCTCCCCTCCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>247 175 168 135 99 74 67 15 12 8</canonical_bands>
                <polymorphic_bands>274 247 168 135 74 67 15 12 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>422 235 135 99 74 15 12 8</canonical_bands>
                <polymorphic_bands>521 235 135 74 15 12 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAAGTGCCAAGGAAGACTTA</pcr_primer_p1>
		<pcr_primer_p2>TGGAGTTCGATTCATACTCTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAGGAGCAAGATTATTCAGAGTATGAATCGAACTCCA</canonical_amplicon>
		<polymorphic_amplicon>TTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATYCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAGGAGCAAGATTATTCAGAGTATGAATCGAACTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35177</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>155884</contig_pos>
        <strand>+</strand>
        <context>TTGGGCTTCT[A/G]GTATTCTGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCAAGATTATTCAGAGTATGAATCGAACTCCACAGGATTTTGGGCTTCT</left_flank>
        <right_flank>GTATTCTGTTGTAGCTCAAAAAACTCTAAAATCGATTTTGTCCTTTTGCT</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTGTTTACGGTACTGTAAGTTTTTGGAATTTTGTAATATAGAAAACTTTCTAAGTTTTTCTACCCTTAAGCTGGTTTCAAAACTTTTTGAAACTCTCAAAAATTTTCAAAAATGCCAGAAAATGTCAAAAAATGCCGAAATTTCAAATTTTGAGAATATGACTCGAGACCGGAGAATTTTCTACTTCGACCGTTACCGTGATTTTTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAGGAGCAAGATTATTCAGAGTATGAATCGAACTCCACAGGATTTTGGGCTTCTGGTATTCTGTTGTAGCTCAAAAAACTCTAAAATCGATTTTGTCCTTTTGCTCTGGCTCTCCGGATCCTGGCATTCTGGTATAGCTCTGTTCTTCCCTGACTTCTTGATTCTTCGATTCCCCAAATAACGAAAAACAATCGTCCTCCTCCGCACCTTGCCATCAGATTTCCACTACTCTCTCTATAATTTTCCAGTGTGAAAATATCGAATTCGAGCTCTCCTCTCTGTCTTCTTTTCCCGCTATTTTTTCCTTCTAGAACTCCTAATTACAGGCCTTGTTTGAGTCCTGTTGGCTCCTTCCCTCTCTCTTTCGAGCTCTTTCGAGCTTCTCCTCTAACCAATTATTAAGAATCTATACACGAATCTCCCCTCCTTCTTCTTTCCCGTTTTTCGTCTTCTTCGTTTTTTTTTTCATCTTGATTTTGTATTAGACGAAAAATATGAGAATCGGAGTGTGTGAAAACCCTTCTCTCCGATATCAAGCCTATGGTTCTCATGATT</canonical>
            <polymorphic>ACCTCTTTTTTGCCAAATTACCAAAAGAATACGTAGTTGTTTACGGTACTGTAAGTTTTTGGAATTTTGTAATATAGAAAACTTTCTAAGTTTTTCTACCCTTAAGCTGGTTTCAAAACTTTTTGAAACTCTCAAAAATTTTCAAAAATGCCAGAAAATGTCAAAAAATGCCGAAATTTCAAATTTTGAGAATATGACTCGAGACCGGAGAATTTTCTACTTCGACCGTTACCGTGATTTTTTAAGTGCCAAGGAAGACTTACGTAGGTCAATATGCCCTAAGCTTGCCCAAGATCCGCTATCCCAATAGATATAACCTATCGATGATTTTTCCCCATGTTTCTTGATATTTTTGATCCCCAATCGGTTAGAATCCATGTAAATGTTGTACATATCAAGGGACAAAGTTGGCCAGAATTTAGATAACATGCCCAAAACCTGGCTCCAGGAGCAAGATTATTCAGAGTATGAATCGAACTCCACAGGATTTTGGGCTTCTRGTATTCTGTTGTAGCTCAAAAAACTCTAAAATCGATTTTGTCCTTTTGCTCTGGCTCTCCGGATCCTGGCATTCTGGTATAGCTCTGTTCTTCCCTGACTTCTTGATTCTTCGATTCCCCAAATAACGAAAAACAATCGTCCTCCTCCGCACCTTGCCATCAGATTTCCACTACTCTCTCTATAATTTTCCAGTGTGAAAATATCGAATTCGAGCTCTCCTCTCTGTCTTCTTTTCCCGCTATTTTTTCCTTCTAGAACTCCTAATTACAGGCCTTGTTTGAGTCCTGTTGGCTCCTTCCCTCTCTCTTTCGAGCTCTTTCGAGCTTCTCCTCTAACCAATTATTAAGAATCTATACACGAATCTCCCCTCCTTCTTCTTTCCCGTTTTTCGTCTTCTTCGTTTTTTTTTTCATCTTGATTTTGTATTAGACGAAAAATATGAGAATCGGAGTGTGTGAAAACCCTTCTCTCCGATATCAAGCCTATGGTTCTCATGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGCAAGATTATTCAGAGTATG</pcr_primer_p1>
		<pcr_primer_p2>CACACTGGAAAATTATAGAGAGAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAGCAAGATTATTCAGAGTATGAATCGAACTCCACAGGATTTTGGGCTTCTGGTATTCTGTTGTAGCTCAAAAAACTCTAAAATCGATTTTGTCCTTTTGCTCTGGCTCTCCGGATCCTGGCATTCTGGTATAGCTCTGTTCTTCCCTGACTTCTTGATTCTTCGATTCCCCAAATAACGAAAAACAATCGTCCTCCTCCGCACCTTGCCATCAGATTTCCACTACTCTCTCTATAATTTTCCAGTGTG</canonical_amplicon>
		<polymorphic_amplicon>GGAGCAAGATTATTCAGAGTATGAATCGAACTCCACAGGATTTTGGGCTTCTRGTATTCTGTTGTAGCTCAAAAAACTCTAAAATCGATTTTGTCCTTTTGCTCTGGCTCTCCGGATCCTGGCATTCTGGTATAGCTCTGTTCTTCCCTGACTTCTTGATTCTTCGATTCCCCAAATAACGAAAAACAATCGTCCTCCTCCGCACCTTGCCATCAGATTTCCACTACTCTCTCTATAATTTTCCAGTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35178</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>158119</contig_pos>
        <strand></strand>
        <context>tatctaaaat[C/T]tgtcaactra</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAAT</left_flank>
        <right_flank>TGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGTGACGTGGACCTTTTCGCTTCTCTCGATTTTTTCACAACTTTGGGCTTCGGAATCCCGAGATAGACGGGAAGGGAAAAAAGTTGGGAAGGCGGATCGAAACGATCCCCGGGGAGTATTACATTTATACAAAGAAGAAAGAAGGAATAGAAGAAGAAAGACTCATCCTCGGCTATCACTCTCTTCTTTTTCTCGTTTGGTTTTCCAAAAATTTCGTATTTGGAAGTTGGCTGAATTCGTCATGTTTTTGAATTTTTGAAGGTCAAAATAAGAATTTTGAGCCACTTTCGGGTTATTTTCCAAGAATTATCTTTCCCAGCTGAGCTAGGCTAGATCTCAGAAAGTCATAAGGGTCCTAAACCTAGATAGGTCAGATTCTAGAACTATCCAATCTATCTGGAGCTCAGGTTGGCTGGCCTTATTTGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGGGGGGATACGGTATGAACCTTCCTAGATTTTCCAATTTCTGGAGGTCTAACCTTTTAGCCTCTGAAAGTTCAAAAATCCAGACGACACAACCATCTTTTTTTTCTAACACCACCTTATTTTTTGTCTTCGAAAGTTTTCTTTTGTATGCACTCACTCTTACTTAAAAATTCTCCGTTTTTT</canonical>
            <polymorphic>CAAGTGACGTGGACCTTTTCGCTTCTCTCGATTTTTTCACAACTTTGGGCTTCGGAATCCCGAGATAGACGGGAAGGGAAAAAAGTTGGGAAGGCGGATCGAAACGATCCCCGGGGAGTATTACATTTATACAAAGAAGAAAGAAGGAATAGAAGAAGAAAGACTCATCCTCGGCTATCACTCTCTTCTTTTTCTCGTTTGGTTTTCCAAAAATTTCGTATTTGGAAGTTGGCTGAATTCGTCATGTTTTTGAATTTTTGAAGGTCAAAATAAGAATTTTGAGCCACTTTCGGGTTATTTTCCAAGAATTATCTTTCCCAGCTGAGCTAGGCTAGATCTCAGAAAGTCATAAGGGTCCTAAACCTAGATAGGTCAGATTCTAGAACTATCCAATCTATCTGGAGCTCAGGTTGGCTGGCCTTATTTGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATYTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGGGGGGATACGGTATGAACCTTCCTAGATTTTCCAATTTCTGGAGGTCTAACCTTTTAGCCTCTGAAAGTTCAAAAATCCAGACGACACAACCATCTTTTTTTTCTAACACCACCTTATTTTTTGTCTTCGAAAGTTTTCTTTTGTATGCACTCACTCTTACTTAAAAATTCTCCGTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTCTTATAGCAGCCTACTG</pcr_primer_p1>
		<pcr_primer_p2>CCTCCCATCCCTTCTAATAA</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>TGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGG</canonical_amplicon>
		<polymorphic_amplicon>TGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATYTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35179</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>158128</contig_pos>
        <strand></strand>
        <context>tytgtcaact[G/A]ataaattgtt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACT</left_flank>
        <right_flank>ATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGACCTTTTCGCTTCTCTCGATTTTTTCACAACTTTGGGCTTCGGAATCCCGAGATAGACGGGAAGGGAAAAAAGTTGGGAAGGCGGATCGAAACGATCCCCGGGGAGTATTACATTTATACAAAGAAGAAAGAAGGAATAGAAGAAGAAAGACTCATCCTCGGCTATCACTCTCTTCTTTTTCTCGTTTGGTTTTCCAAAAATTTCGTATTTGGAAGTTGGCTGAATTCGTCATGTTTTTGAATTTTTGAAGGTCAAAATAAGAATTTTGAGCCACTTTCGGGTTATTTTCCAAGAATTATCTTTCCCAGCTGAGCTAGGCTAGATCTCAGAAAGTCATAAGGGTCCTAAACCTAGATAGGTCAGATTCTAGAACTATCCAATCTATCTGGAGCTCAGGTTGGCTGGCCTTATTTGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGGGGGGATACGGTATGAACCTTCCTAGATTTTCCAATTTCTGGAGGTCTAACCTTTTAGCCTCTGAAAGTTCAAAAATCCAGACGACACAACCATCTTTTTTTTCTAACACCACCTTATTTTTTGTCTTCGAAAGTTTTCTTTTGTATGCACTCACTCTTACTTAAAAATTCTCCGTTTTTTCGGAAAACT</canonical>
            <polymorphic>TGGACCTTTTCGCTTCTCTCGATTTTTTCACAACTTTGGGCTTCGGAATCCCGAGATAGACGGGAAGGGAAAAAAGTTGGGAAGGCGGATCGAAACGATCCCCGGGGAGTATTACATTTATACAAAGAAGAAAGAAGGAATAGAAGAAGAAAGACTCATCCTCGGCTATCACTCTCTTCTTTTTCTCGTTTGGTTTTCCAAAAATTTCGTATTTGGAAGTTGGCTGAATTCGTCATGTTTTTGAATTTTTGAAGGTCAAAATAAGAATTTTGAGCCACTTTCGGGTTATTTTCCAAGAATTATCTTTCCCAGCTGAGCTAGGCTAGATCTCAGAAAGTCATAAGGGTCCTAAACCTAGATAGGTCAGATTCTAGAACTATCCAATCTATCTGGAGCTCAGGTTGGCTGGCCTTATTTGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTRATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGGGGGGATACGGTATGAACCTTCCTAGATTTTCCAATTTCTGGAGGTCTAACCTTTTAGCCTCTGAAAGTTCAAAAATCCAGACGACACAACCATCTTTTTTTTCTAACACCACCTTATTTTTTGTCTTCGAAAGTTTTCTTTTGTATGCACTCACTCTTACTTAAAAATTCTCCGTTTTTTCGGAAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTCTTATAGCAGCCTACTG</pcr_primer_p1>
		<pcr_primer_p2>CCTCCCATCCCTTCTAATAA</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>TGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGG</canonical_amplicon>
		<polymorphic_amplicon>TGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTRATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35180</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>158174</contig_pos>
        <strand></strand>
        <context>cagttgacag[G/T]ttcttcatat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAG</left_flank>
        <right_flank>TTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCCCGAGATAGACGGGAAGGGAAAAAAGTTGGGAAGGCGGATCGAAACGATCCCCGGGGAGTATTACATTTATACAAAGAAGAAAGAAGGAATAGAAGAAGAAAGACTCATCCTCGGCTATCACTCTCTTCTTTTTCTCGTTTGGTTTTCCAAAAATTTCGTATTTGGAAGTTGGCTGAATTCGTCATGTTTTTGAATTTTTGAAGGTCAAAATAAGAATTTTGAGCCACTTTCGGGTTATTTTCCAAGAATTATCTTTCCCAGCTGAGCTAGGCTAGATCTCAGAAAGTCATAAGGGTCCTAAACCTAGATAGGTCAGATTCTAGAACTATCCAATCTATCTGGAGCTCAGGTTGGCTGGCCTTATTTGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGGGGGGATACGGTATGAACCTTCCTAGATTTTCCAATTTCTGGAGGTCTAACCTTTTAGCCTCTGAAAGTTCAAAAATCCAGACGACACAACCATCTTTTTTTTCTAACACCACCTTATTTTTTGTCTTCGAAAGTTTTCTTTTGTATGCACTCACTCTTACTTAAAAATTCTCCGTTTTTTCGGAAAACTTGAAAATTCGAAAAAAAAAGAAGATATAGTAGAAGAGGTGGTTGGT</canonical>
            <polymorphic>AATCCCGAGATAGACGGGAAGGGAAAAAAGTTGGGAAGGCGGATCGAAACGATCCCCGGGGAGTATTACATTTATACAAAGAAGAAAGAAGGAATAGAAGAAGAAAGACTCATCCTCGGCTATCACTCTCTTCTTTTTCTCGTTTGGTTTTCCAAAAATTTCGTATTTGGAAGTTGGCTGAATTCGTCATGTTTTTGAATTTTTGAAGGTCAAAATAAGAATTTTGAGCCACTTTCGGGTTATTTTCCAAGAATTATCTTTCCCAGCTGAGCTAGGCTAGATCTCAGAAAGTCATAAGGGTCCTAAACCTAGATAGGTCAGATTCTAGAACTATCCAATCTATCTGGAGCTCAGGTTGGCTGGCCTTATTTGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGKTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGGGGGGATACGGTATGAACCTTCCTAGATTTTCCAATTTCTGGAGGTCTAACCTTTTAGCCTCTGAAAGTTCAAAAATCCAGACGACACAACCATCTTTTTTTTCTAACACCACCTTATTTTTTGTCTTCGAAAGTTTTCTTTTGTATGCACTCACTCTTACTTAAAAATTCTCCGTTTTTTCGGAAAACTTGAAAATTCGAAAAAAAAAGAAGATATAGTAGAAGAGGTGGTTGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTCTTATAGCAGCCTACTG</pcr_primer_p1>
		<pcr_primer_p2>CCTCCCATCCCTTCTAATAA</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>TGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGG</canonical_amplicon>
		<polymorphic_amplicon>TGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGKTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35181</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>158301</contig_pos>
        <strand></strand>
        <context>tatcaaaaac[C/T]kgtcarctga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAAC</left_flank>
        <right_flank>TGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTTCTTTTTCTCGTTTGGTTTTCCAAAAATTTCGTATTTGGAAGTTGGCTGAATTCGTCATGTTTTTGAATTTTTGAAGGTCAAAATAAGAATTTTGAGCCACTTTCGGGTTATTTTCCAAGAATTATCTTTCCCAGCTGAGCTAGGCTAGATCTCAGAAAGTCATAAGGGTCCTAAACCTAGATAGGTCAGATTCTAGAACTATCCAATCTATCTGGAGCTCAGGTTGGCTGGCCTTATTTGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGGGGGGATACGGTATGAACCTTCCTAGATTTTCCAATTTCTGGAGGTCTAACCTTTTAGCCTCTGAAAGTTCAAAAATCCAGACGACACAACCATCTTTTTTTTCTAACACCACCTTATTTTTTGTCTTCGAAAGTTTTCTTTTGTATGCACTCACTCTTACTTAAAAATTCTCCGTTTTTTCGGAAAACTTGAAAATTCGAAAAAAAAAGAAGATATAGTAGAAGAGGTGGTTGGTGGGAAGAAGAAGAAGAAGAAGACGTCGCACTCTTTTCTCTTCTGGAAGTCGGCGTCTGACGACATCCTCACGAAAATCTGAGCAAAGTTAGAGAGAGCGCTGGAATCGAGGAGACGCCGACGCTAAC</canonical>
            <polymorphic>CTCTTCTTTTTCTCGTTTGGTTTTCCAAAAATTTCGTATTTGGAAGTTGGCTGAATTCGTCATGTTTTTGAATTTTTGAAGGTCAAAATAAGAATTTTGAGCCACTTTCGGGTTATTTTCCAAGAATTATCTTTCCCAGCTGAGCTAGGCTAGATCTCAGAAAGTCATAAGGGTCCTAAACCTAGATAGGTCAGATTCTAGAACTATCCAATCTATCTGGAGCTCAGGTTGGCTGGCCTTATTTGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACYTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGGGGGGATACGGTATGAACCTTCCTAGATTTTCCAATTTCTGGAGGTCTAACCTTTTAGCCTCTGAAAGTTCAAAAATCCAGACGACACAACCATCTTTTTTTTCTAACACCACCTTATTTTTTGTCTTCGAAAGTTTTCTTTTGTATGCACTCACTCTTACTTAAAAATTCTCCGTTTTTTCGGAAAACTTGAAAATTCGAAAAAAAAAGAAGATATAGTAGAAGAGGTGGTTGGTGGGAAGAAGAAGAAGAAGAAGACGTCGCACTCTTTTCTCTTCTGGAAGTCGGCGTCTGACGACATCCTCACGAAAATCTGAGCAAAGTTAGAGAGAGCGCTGGAATCGAGGAGACGCCGACGCTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTCTTATAGCAGCCTACTG</pcr_primer_p1>
		<pcr_primer_p2>CCTCCCATCCCTTCTAATAA</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>TGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGG</canonical_amplicon>
		<polymorphic_amplicon>TGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACYTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35182</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>158302</contig_pos>
        <strand></strand>
        <context>atcaaaaacy[T/G]gtcarctgat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACC</left_flank>
        <right_flank>GTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCTTTTTCTCGTTTGGTTTTCCAAAAATTTCGTATTTGGAAGTTGGCTGAATTCGTCATGTTTTTGAATTTTTGAAGGTCAAAATAAGAATTTTGAGCCACTTTCGGGTTATTTTCCAAGAATTATCTTTCCCAGCTGAGCTAGGCTAGATCTCAGAAAGTCATAAGGGTCCTAAACCTAGATAGGTCAGATTCTAGAACTATCCAATCTATCTGGAGCTCAGGTTGGCTGGCCTTATTTGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGGGGGGATACGGTATGAACCTTCCTAGATTTTCCAATTTCTGGAGGTCTAACCTTTTAGCCTCTGAAAGTTCAAAAATCCAGACGACACAACCATCTTTTTTTTCTAACACCACCTTATTTTTTGTCTTCGAAAGTTTTCTTTTGTATGCACTCACTCTTACTTAAAAATTCTCCGTTTTTTCGGAAAACTTGAAAATTCGAAAAAAAAAGAAGATATAGTAGAAGAGGTGGTTGGTGGGAAGAAGAAGAAGAAGAAGACGTCGCACTCTTTTCTCTTCTGGAAGTCGGCGTCTGACGACATCCTCACGAAAATCTGAGCAAAGTTAGAGAGAGCGCTGGAATCGAGGAGACGCCGACGCTAACT</canonical>
            <polymorphic>TCTTCTTTTTCTCGTTTGGTTTTCCAAAAATTTCGTATTTGGAAGTTGGCTGAATTCGTCATGTTTTTGAATTTTTGAAGGTCAAAATAAGAATTTTGAGCCACTTTCGGGTTATTTTCCAAGAATTATCTTTCCCAGCTGAGCTAGGCTAGATCTCAGAAAGTCATAAGGGTCCTAAACCTAGATAGGTCAGATTCTAGAACTATCCAATCTATCTGGAGCTCAGGTTGGCTGGCCTTATTTGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCKGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGGGGGGATACGGTATGAACCTTCCTAGATTTTCCAATTTCTGGAGGTCTAACCTTTTAGCCTCTGAAAGTTCAAAAATCCAGACGACACAACCATCTTTTTTTTCTAACACCACCTTATTTTTTGTCTTCGAAAGTTTTCTTTTGTATGCACTCACTCTTACTTAAAAATTCTCCGTTTTTTCGGAAAACTTGAAAATTCGAAAAAAAAAGAAGATATAGTAGAAGAGGTGGTTGGTGGGAAGAAGAAGAAGAAGAAGACGTCGCACTCTTTTCTCTTCTGGAAGTCGGCGTCTGACGACATCCTCACGAAAATCTGAGCAAAGTTAGAGAGAGCGCTGGAATCGAGGAGACGCCGACGCTAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTCTTATAGCAGCCTACTG</pcr_primer_p1>
		<pcr_primer_p2>CCTCCCATCCCTTCTAATAA</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>TGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGG</canonical_amplicon>
		<polymorphic_amplicon>TGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCKGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35183</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>158307</contig_pos>
        <strand></strand>
        <context>aaacykgtca[A/G]ctgataaaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCA</left_flank>
        <right_flank>CTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAAT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTCTCGTTTGGTTTTCCAAAAATTTCGTATTTGGAAGTTGGCTGAATTCGTCATGTTTTTGAATTTTTGAAGGTCAAAATAAGAATTTTGAGCCACTTTCGGGTTATTTTCCAAGAATTATCTTTCCCAGCTGAGCTAGGCTAGATCTCAGAAAGTCATAAGGGTCCTAAACCTAGATAGGTCAGATTCTAGAACTATCCAATCTATCTGGAGCTCAGGTTGGCTGGCCTTATTTGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGGGGGGATACGGTATGAACCTTCCTAGATTTTCCAATTTCTGGAGGTCTAACCTTTTAGCCTCTGAAAGTTCAAAAATCCAGACGACACAACCATCTTTTTTTTCTAACACCACCTTATTTTTTGTCTTCGAAAGTTTTCTTTTGTATGCACTCACTCTTACTTAAAAATTCTCCGTTTTTTCGGAAAACTTGAAAATTCGAAAAAAAAAGAAGATATAGTAGAAGAGGTGGTTGGTGGGAAGAAGAAGAAGAAGAAGACGTCGCACTCTTTTCTCTTCTGGAAGTCGGCGTCTGACGACATCCTCACGAAAATCTGAGCAAAGTTAGAGAGAGCGCTGGAATCGAGGAGACGCCGACGCTAACTCAGTT</canonical>
            <polymorphic>TTTTTCTCGTTTGGTTTTCCAAAAATTTCGTATTTGGAAGTTGGCTGAATTCGTCATGTTTTTGAATTTTTGAAGGTCAAAATAAGAATTTTGAGCCACTTTCGGGTTATTTTCCAAGAATTATCTTTCCCAGCTGAGCTAGGCTAGATCTCAGAAAGTCATAAGGGTCCTAAACCTAGATAGGTCAGATTCTAGAACTATCCAATCTATCTGGAGCTCAGGTTGGCTGGCCTTATTTGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCARCTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGGGGGGATACGGTATGAACCTTCCTAGATTTTCCAATTTCTGGAGGTCTAACCTTTTAGCCTCTGAAAGTTCAAAAATCCAGACGACACAACCATCTTTTTTTTCTAACACCACCTTATTTTTTGTCTTCGAAAGTTTTCTTTTGTATGCACTCACTCTTACTTAAAAATTCTCCGTTTTTTCGGAAAACTTGAAAATTCGAAAAAAAAAGAAGATATAGTAGAAGAGGTGGTTGGTGGGAAGAAGAAGAAGAAGAAGACGTCGCACTCTTTTCTCTTCTGGAAGTCGGCGTCTGACGACATCCTCACGAAAATCTGAGCAAAGTTAGAGAGAGCGCTGGAATCGAGGAGACGCCGACGCTAACTCAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>502 316 137 45</canonical_bands>
                <polymorphic_bands>639 316 45</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>400 316 137 102 30 15</canonical_bands>
                <polymorphic_bands>400 316 239 30 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCTCTTATAGCAGCCTACTG</pcr_primer_p1>
		<pcr_primer_p2>CCTCCCATCCCTTCTAATAA</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>TGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGG</canonical_amplicon>
		<polymorphic_amplicon>TGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCARCTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35184</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>158363</contig_pos>
        <strand></strand>
        <context>caaatttttg[G/T]taggtctcmt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTG</left_flank>
        <right_flank>TAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAAC</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTTTGAATTTTTGAAGGTCAAAATAAGAATTTTGAGCCACTTTCGGGTTATTTTCCAAGAATTATCTTTCCCAGCTGAGCTAGGCTAGATCTCAGAAAGTCATAAGGGTCCTAAACCTAGATAGGTCAGATTCTAGAACTATCCAATCTATCTGGAGCTCAGGTTGGCTGGCCTTATTTGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGGGGGGATACGGTATGAACCTTCCTAGATTTTCCAATTTCTGGAGGTCTAACCTTTTAGCCTCTGAAAGTTCAAAAATCCAGACGACACAACCATCTTTTTTTTCTAACACCACCTTATTTTTTGTCTTCGAAAGTTTTCTTTTGTATGCACTCACTCTTACTTAAAAATTCTCCGTTTTTTCGGAAAACTTGAAAATTCGAAAAAAAAAGAAGATATAGTAGAAGAGGTGGTTGGTGGGAAGAAGAAGAAGAAGAAGACGTCGCACTCTTTTCTCTTCTGGAAGTCGGCGTCTGACGACATCCTCACGAAAATCTGAGCAAAGTTAGAGAGAGCGCTGGAATCGAGGAGACGCCGACGCTAACTCAGTTTCCGCGAACAATCCCAATCAGTGCCGACGTCTTCTTAGGAAGAAGGCGAAAACTTC</canonical>
            <polymorphic>TGTTTTTGAATTTTTGAAGGTCAAAATAAGAATTTTGAGCCACTTTCGGGTTATTTTCCAAGAATTATCTTTCCCAGCTGAGCTAGGCTAGATCTCAGAAAGTCATAAGGGTCCTAAACCTAGATAGGTCAGATTCTAGAACTATCCAATCTATCTGGAGCTCAGGTTGGCTGGCCTTATTTGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGKTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGGGGGGATACGGTATGAACCTTCCTAGATTTTCCAATTTCTGGAGGTCTAACCTTTTAGCCTCTGAAAGTTCAAAAATCCAGACGACACAACCATCTTTTTTTTCTAACACCACCTTATTTTTTGTCTTCGAAAGTTTTCTTTTGTATGCACTCACTCTTACTTAAAAATTCTCCGTTTTTTCGGAAAACTTGAAAATTCGAAAAAAAAAGAAGATATAGTAGAAGAGGTGGTTGGTGGGAAGAAGAAGAAGAAGAAGACGTCGCACTCTTTTCTCTTCTGGAAGTCGGCGTCTGACGACATCCTCACGAAAATCTGAGCAAAGTTAGAGAGAGCGCTGGAATCGAGGAGACGCCGACGCTAACTCAGTTTCCGCGAACAATCCCAATCAGTGCCGACGTCTTCTTAGGAAGAAGGCGAAAACTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTCTTATAGCAGCCTACTG</pcr_primer_p1>
		<pcr_primer_p2>CCTCCCATCCCTTCTAATAA</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>TGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGG</canonical_amplicon>
		<polymorphic_amplicon>TGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGKTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35185</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>158372</contig_pos>
        <strand>+</strand>
        <context>gktaggtctc[A/C]tgggaaccga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTC</left_flank>
        <right_flank>TGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTGAAGGTCAAAATAAGAATTTTGAGCCACTTTCGGGTTATTTTCCAAGAATTATCTTTCCCAGCTGAGCTAGGCTAGATCTCAGAAAGTCATAAGGGTCCTAAACCTAGATAGGTCAGATTCTAGAACTATCCAATCTATCTGGAGCTCAGGTTGGCTGGCCTTATTTGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGGGGGGATACGGTATGAACCTTCCTAGATTTTCCAATTTCTGGAGGTCTAACCTTTTAGCCTCTGAAAGTTCAAAAATCCAGACGACACAACCATCTTTTTTTTCTAACACCACCTTATTTTTTGTCTTCGAAAGTTTTCTTTTGTATGCACTCACTCTTACTTAAAAATTCTCCGTTTTTTCGGAAAACTTGAAAATTCGAAAAAAAAAGAAGATATAGTAGAAGAGGTGGTTGGTGGGAAGAAGAAGAAGAAGAAGACGTCGCACTCTTTTCTCTTCTGGAAGTCGGCGTCTGACGACATCCTCACGAAAATCTGAGCAAAGTTAGAGAGAGCGCTGGAATCGAGGAGACGCCGACGCTAACTCAGTTTCCGCGAACAATCCCAATCAGTGCCGACGTCTTCTTAGGAAGAAGGCGAAAACTTCGAAACAGAA</canonical>
            <polymorphic>ATTTTTGAAGGTCAAAATAAGAATTTTGAGCCACTTTCGGGTTATTTTCCAAGAATTATCTTTCCCAGCTGAGCTAGGCTAGATCTCAGAAAGTCATAAGGGTCCTAAACCTAGATAGGTCAGATTCTAGAACTATCCAATCTATCTGGAGCTCAGGTTGGCTGGCCTTATTTGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCMTGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGGGGGGATACGGTATGAACCTTCCTAGATTTTCCAATTTCTGGAGGTCTAACCTTTTAGCCTCTGAAAGTTCAAAAATCCAGACGACACAACCATCTTTTTTTTCTAACACCACCTTATTTTTTGTCTTCGAAAGTTTTCTTTTGTATGCACTCACTCTTACTTAAAAATTCTCCGTTTTTTCGGAAAACTTGAAAATTCGAAAAAAAAAGAAGATATAGTAGAAGAGGTGGTTGGTGGGAAGAAGAAGAAGAAGAAGACGTCGCACTCTTTTCTCTTCTGGAAGTCGGCGTCTGACGACATCCTCACGAAAATCTGAGCAAAGTTAGAGAGAGCGCTGGAATCGAGGAGACGCCGACGCTAACTCAGTTTCCGCGAACAATCCCAATCAGTGCCGACGTCTTCTTAGGAAGAAGGCGAAAACTTCGAAACAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 452 47</canonical_bands>
                <polymorphic_bands>548 452</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCTCTTATAGCAGCCTACTG</pcr_primer_p1>
		<pcr_primer_p2>CCTCCCATCCCTTCTAATAA</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>TGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGG</canonical_amplicon>
		<polymorphic_amplicon>TGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCMTGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35186</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>158407</contig_pos>
        <strand></strand>
        <context>aagAGCACGT[A/G]TACAACGGGM</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGT</left_flank>
        <right_flank>TACAACGGGATTTTATTAGAAGGGATGGGAGGGGGGATACGGTATGAACC</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGGGTTATTTTCCAAGAATTATCTTTCCCAGCTGAGCTAGGCTAGATCTCAGAAAGTCATAAGGGTCCTAAACCTAGATAGGTCAGATTCTAGAACTATCCAATCTATCTGGAGCTCAGGTTGGCTGGCCTTATTTGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGGGGGGATACGGTATGAACCTTCCTAGATTTTCCAATTTCTGGAGGTCTAACCTTTTAGCCTCTGAAAGTTCAAAAATCCAGACGACACAACCATCTTTTTTTTCTAACACCACCTTATTTTTTGTCTTCGAAAGTTTTCTTTTGTATGCACTCACTCTTACTTAAAAATTCTCCGTTTTTTCGGAAAACTTGAAAATTCGAAAAAAAAAGAAGATATAGTAGAAGAGGTGGTTGGTGGGAAGAAGAAGAAGAAGAAGACGTCGCACTCTTTTCTCTTCTGGAAGTCGGCGTCTGACGACATCCTCACGAAAATCTGAGCAAAGTTAGAGAGAGCGCTGGAATCGAGGAGACGCCGACGCTAACTCAGTTTCCGCGAACAATCCCAATCAGTGCCGACGTCTTCTTAGGAAGAAGGCGAAAACTTCGAAACAGAATAAAACGTCGTCTTCCCTTCCCTCGCAACGTCTTC</canonical>
            <polymorphic>TTCGGGTTATTTTCCAAGAATTATCTTTCCCAGCTGAGCTAGGCTAGATCTCAGAAAGTCATAAGGGTCCTAAACCTAGATAGGTCAGATTCTAGAACTATCCAATCTATCTGGAGCTCAGGTTGGCTGGCCTTATTTGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTRTACAACGGGATTTTATTAGAAGGGATGGGAGGGGGGATACGGTATGAACCTTCCTAGATTTTCCAATTTCTGGAGGTCTAACCTTTTAGCCTCTGAAAGTTCAAAAATCCAGACGACACAACCATCTTTTTTTTCTAACACCACCTTATTTTTTGTCTTCGAAAGTTTTCTTTTGTATGCACTCACTCTTACTTAAAAATTCTCCGTTTTTTCGGAAAACTTGAAAATTCGAAAAAAAAAGAAGATATAGTAGAAGAGGTGGTTGGTGGGAAGAAGAAGAAGAAGAAGACGTCGCACTCTTTTCTCTTCTGGAAGTCGGCGTCTGACGACATCCTCACGAAAATCTGAGCAAAGTTAGAGAGAGCGCTGGAATCGAGGAGACGCCGACGCTAACTCAGTTTCCGCGAACAATCCCAATCAGTGCCGACGTCTTCTTAGGAAGAAGGCGAAAACTTCGAAACAGAATAAAACGTCGTCTTCCCTTCCCTCGCAACGTCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTATAC</site>
                <isoschizomers>
                    <enzyme>BssNAI</enzyme>
                    <enzyme>Bst1107I</enzyme>
                    <enzyme>BstZ17I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCTCTTATAGCAGCCTACTG</pcr_primer_p1>
		<pcr_primer_p2>GGAAGGTTCATACCGTATCC</pcr_primer_p2>
		<pcr_amplicon_size>417</pcr_amplicon_size>
		<canonical_amplicon>TGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTATACAACGGGATTTTATTAGAAGGGATGGGAGGGGGGATACGGTATGAACCTTCC</canonical_amplicon>
		<polymorphic_amplicon>TGCTCTTATAGCAGCCTACTGTAATTTTTACTTTGAGCTCGATTATCTCGGTCCCTATGAGAGATATCTAAAATCTGTCAACTGATAAATTGTTTACCATAATATTGCCAATACTTTGTCAGTTGACAGGTTCTTCATATCTTTGACAAGAACCGAGATAAGTTGAATCAAAGTTAAGGGATCTCCTAATAGATGCCCACCCCATATGAGCATTTTGAGCTCAATTATCTCGGTCCCTGTGAAAGATATCAAAAACCTGTCAACTGATAAAATATTTATCATGACATCACTCATATTTTATCAATTGACAAATTTTTGGTAGGTCTCATGGGAACCGAGATAATTGAGCTCGAAGAGCACGTRTACAACGGGATTTTATTAGAAGGGATGGGAGGGGGGATACGGTATGAACCTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35187</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>160097</contig_pos>
        <strand></strand>
        <context>AAAATCCAAT[C/A]TTTTTTCTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CTGCCAAGTCTTCATCGAAAAACTGCCAAGTCTTCAGCGAAAAATCCAAT</left_flank>
        <right_flank>TTTTTTCTTGCATCCCCCTCCCACTTCTCTACCAATCAATCATGCGCATT</right_flank>
        <qual_score>35</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCTTGTCTCAGTTTTGCAAAAGTTATGGTACAGTCGGTTTTCTTCTATTTTCCATCATAATTGCATTAAACTTGTCCGTGAAGGCTAGCTAATTTAGCTCTAAGAGAAGCCCACCCAAACTGCCAACTTTGAGCTCAATTATCTGAATTCATATGAGAGGTATCAAAAATTTGTCAGCTGATAAAATATTGGTGATATCAGGATAAATAATTTTTCAGTTAAAAGATTTTTGATATTTCTTATAGGAACCGAGATTTGAGTTCAAAGGAAACGTACCTCCTTCGTTCGGCCGTCTCAGCGTGCGCAACCGTAGCTCAGATGGTACCAACGCCTCACCTGCAATTGTTCGCCCACAAGTTAAATTTCCCAAAAGACTTATATGAACGGAATTCCGAGAAAATAACTGTTCATGTCCCCCACCTTTAAAGCCTTCACAGTAACTCCAAACTGCCAAGTCTTCATCGAAAAACTGCCAAGTCTTCAGCGAAAAATCCAATCTTTTTTCTTGCATCCCCCTCCCACTTCTCTACCAATCAATCATGCGCATTTCCAATTGGCGCCAAGGCGATCCTTCCGAAATAACAATAGAATACGAAACCCCGTCCGAGTCTTCTCAAATACACATGTCATCTCTCACTTCTTCTTTTTTGCTTTTTTGGCTCAGATTAATTTTTTTTTCTTGAAGTCTTTTTTTTTTGTTCTTTGGAAAACTTATAGGTTTTTTGTAGGGTAATTGTTGGAATGTTTTGAAGTGTTCGAAGTTGAATCAGCTGCGTCTACGGTAACCTGTTAGTGATCAAGGTGAGTCTGGAAGTTTTTGAAAAATGAGAATTTAAACTGATTTTGGGAGGACTGGGATCTGGAATGGGTGAAGACTGGAATCAATCTTTTTTAATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAAC</canonical>
            <polymorphic>AATCTTGTCTCAGTTTTGCAAAAGTTATGGTACAGTCGGTTTTCTTCTATTTTCCATCATAATTGCATTAAACTTGTCCGTGAAGGCTAGCTAATTTAGCTCTAAGAGAAGCCCACCCAAACTGCCAACTTTGAGCTCAATTATCTGAATTCATATGAGAGGTATCAAAAATTTGTCAGCTGATAAAATATTGGTGATATCAGGATAAATAATTTTTCAGTTAAAAGATTTTTGATATTTCTTATAGGAACCGAGATTTGAGTTCAAAGGAAACGTACCTCCTTCGTTCGGCCGTCTCAGCGTGCGCAACCGTAGCTCAGATGGTACCAACGCCTCACCTGCAATTGTTCGCCCACAAGTTAAATTTCCCAAAAGACTTATATGAACGGAATTCCGAGAAAATAACTGTTCATGTCCCCCACCTTTAAAGCCTTCACAGTAACTCCAAACTGCCAAGTCTTCATCGAAAAACTGCCAAGTCTTCAGCGAAAAATCCAATMTTTTTTCTTGCATCCCCCTCCCACTTCTCTACCAATCAATCATGCGCATTTCCAATTGGCGCCAAGGCGATCCTTCCGAAATAACAATAGAATACGAAACCCCGTCCGAGTCTTCTCAAATACACATGTCATCTCTCACTTCTTCTTTTTTGCTTTTTTGGCTCAGATTAATTTTTTTTTCTTGAAGTCTTTTTTTTTTGTTCTTTGGAAAACTTATAGGTTTTTTGTAGGGTAATTGTTGGAATGTTTTGAAGTGTTCGAAGTTGAATCAGCTGCGTCTACGGTAACCTGTTAGTGATCAAGGTGAGTCTGGAAGTTTTTGAAAAATGAGAATTTAAACTGATTTTGGGAGGACTGGGATCTGGAATGGGTGAAGACTGGAATCAATCTTTTTTAATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAGTTAAATTTCCCAAAAGAC</pcr_primer_p1>
		<pcr_primer_p2>GGGGTTTCGTATTCTATTGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAAGTTAAATTTCCCAAAAGACTTATATGAACGGAATTCCGAGAAAATAACTGTTCATGTCCCCCACCTTTAAAGCCTTCACAGTAACTCCAAACTGCCAAGTCTTCATCGAAAAACTGCCAAGTCTTCAGCGAAAAATCCAATCTTTTTTCTTGCATCCCCCTCCCACTTCTCTACCAATCAATCATGCGCATTTCCAATTGGCGCCAAGGCGATCCTTCCGAAATAACAATAGAATACGAAACCCC</canonical_amplicon>
		<polymorphic_amplicon>ACAAGTTAAATTTCCCAAAAGACTTATATGAACGGAATTCCGAGAAAATAACTGTTCATGTCCCCCACCTTTAAAGCCTTCACAGTAACTCCAAACTGCCAAGTCTTCATCGAAAAACTGCCAAGTCTTCAGCGAAAAATCCAATMTTTTTTCTTGCATCCCCCTCCCACTTCTCTACCAATCAATCATGCGCATTTCCAATTGGCGCCAAGGCGATCCTTCCGAAATAACAATAGAATACGAAACCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35188</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>160113</contig_pos>
        <strand></strand>
        <context>TCTTGCATCC[C/T]CCTCCCACTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAAACTGCCAAGTCTTCAGCGAAAAATCCAATCTTTTTTCTTGCATCC</left_flank>
        <right_flank>CCTCCCACTTCTCTACCAATCAATCATGCGCATTTCCAATTGGCGCCAAG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCAAAAGTTATGGTACAGTCGGTTTTCTTCTATTTTCCATCATAATTGCATTAAACTTGTCCGTGAAGGCTAGCTAATTTAGCTCTAAGAGAAGCCCACCCAAACTGCCAACTTTGAGCTCAATTATCTGAATTCATATGAGAGGTATCAAAAATTTGTCAGCTGATAAAATATTGGTGATATCAGGATAAATAATTTTTCAGTTAAAAGATTTTTGATATTTCTTATAGGAACCGAGATTTGAGTTCAAAGGAAACGTACCTCCTTCGTTCGGCCGTCTCAGCGTGCGCAACCGTAGCTCAGATGGTACCAACGCCTCACCTGCAATTGTTCGCCCACAAGTTAAATTTCCCAAAAGACTTATATGAACGGAATTCCGAGAAAATAACTGTTCATGTCCCCCACCTTTAAAGCCTTCACAGTAACTCCAAACTGCCAAGTCTTCATCGAAAAACTGCCAAGTCTTCAGCGAAAAATCCAATCTTTTTTCTTGCATCCCCCTCCCACTTCTCTACCAATCAATCATGCGCATTTCCAATTGGCGCCAAGGCGATCCTTCCGAAATAACAATAGAATACGAAACCCCGTCCGAGTCTTCTCAAATACACATGTCATCTCTCACTTCTTCTTTTTTGCTTTTTTGGCTCAGATTAATTTTTTTTTCTTGAAGTCTTTTTTTTTTGTTCTTTGGAAAACTTATAGGTTTTTTGTAGGGTAATTGTTGGAATGTTTTGAAGTGTTCGAAGTTGAATCAGCTGCGTCTACGGTAACCTGTTAGTGATCAAGGTGAGTCTGGAAGTTTTTGAAAAATGAGAATTTAAACTGATTTTGGGAGGACTGGGATCTGGAATGGGTGAAGACTGGAATCAATCTTTTTTAATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAAT</canonical>
            <polymorphic>TGCAAAAGTTATGGTACAGTCGGTTTTCTTCTATTTTCCATCATAATTGCATTAAACTTGTCCGTGAAGGCTAGCTAATTTAGCTCTAAGAGAAGCCCACCCAAACTGCCAACTTTGAGCTCAATTATCTGAATTCATATGAGAGGTATCAAAAATTTGTCAGCTGATAAAATATTGGTGATATCAGGATAAATAATTTTTCAGTTAAAAGATTTTTGATATTTCTTATAGGAACCGAGATTTGAGTTCAAAGGAAACGTACCTCCTTCGTTCGGCCGTCTCAGCGTGCGCAACCGTAGCTCAGATGGTACCAACGCCTCACCTGCAATTGTTCGCCCACAAGTTAAATTTCCCAAAAGACTTATATGAACGGAATTCCGAGAAAATAACTGTTCATGTCCCCCACCTTTAAAGCCTTCACAGTAACTCCAAACTGCCAAGTCTTCATCGAAAAACTGCCAAGTCTTCAGCGAAAAATCCAATCTTTTTTCTTGCATCCYCCTCCCACTTCTCTACCAATCAATCATGCGCATTTCCAATTGGCGCCAAGGCGATCCTTCCGAAATAACAATAGAATACGAAACCCCGTCCGAGTCTTCTCAAATACACATGTCATCTCTCACTTCTTCTTTTTTGCTTTTTTGGCTCAGATTAATTTTTTTTTCTTGAAGTCTTTTTTTTTTGTTCTTTGGAAAACTTATAGGTTTTTTGTAGGGTAATTGTTGGAATGTTTTGAAGTGTTCGAAGTTGAATCAGCTGCGTCTACGGTAACCTGTTAGTGATCAAGGTGAGTCTGGAAGTTTTTGAAAAATGAGAATTTAAACTGATTTTGGGAGGACTGGGATCTGGAATGGGTGAAGACTGGAATCAATCTTTTTTAATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAGTTAAATTTCCCAAAAGAC</pcr_primer_p1>
		<pcr_primer_p2>GGGGTTTCGTATTCTATTGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAAGTTAAATTTCCCAAAAGACTTATATGAACGGAATTCCGAGAAAATAACTGTTCATGTCCCCCACCTTTAAAGCCTTCACAGTAACTCCAAACTGCCAAGTCTTCATCGAAAAACTGCCAAGTCTTCAGCGAAAAATCCAATCTTTTTTCTTGCATCCCCCTCCCACTTCTCTACCAATCAATCATGCGCATTTCCAATTGGCGCCAAGGCGATCCTTCCGAAATAACAATAGAATACGAAACCCC</canonical_amplicon>
		<polymorphic_amplicon>ACAAGTTAAATTTCCCAAAAGACTTATATGAACGGAATTCCGAGAAAATAACTGTTCATGTCCCCCACCTTTAAAGCCTTCACAGTAACTCCAAACTGCCAAGTCTTCATCGAAAAACTGCCAAGTCTTCAGCGAAAAATCCAATCTTTTTTCTTGCATCCYCCTCCCACTTCTCTACCAATCAATCATGCGCATTTCCAATTGGCGCCAAGGCGATCCTTCCGAAATAACAATAGAATACGAAACCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35189</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>160523</contig_pos>
        <strand>+</strand>
        <context>TAGAAGCCCT[A/G]YTGCGTTGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACTGGAATCAATCTTTTTTAATGAAATATTTTGCTTGAATAGAAGCCCT</left_flank>
        <right_flank>CTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGCCTTCACAGTAACTCCAAACTGCCAAGTCTTCATCGAAAAACTGCCAAGTCTTCAGCGAAAAATCCAATCTTTTTTCTTGCATCCCCCTCCCACTTCTCTACCAATCAATCATGCGCATTTCCAATTGGCGCCAAGGCGATCCTTCCGAAATAACAATAGAATACGAAACCCCGTCCGAGTCTTCTCAAATACACATGTCATCTCTCACTTCTTCTTTTTTGCTTTTTTGGCTCAGATTAATTTTTTTTTCTTGAAGTCTTTTTTTTTTGTTCTTTGGAAAACTTATAGGTTTTTTGTAGGGTAATTGTTGGAATGTTTTGAAGTGTTCGAAGTTGAATCAGCTGCGTCTACGGTAACCTGTTAGTGATCAAGGTGAGTCTGGAAGTTTTTGAAAAATGAGAATTTAAACTGATTTTGGGAGGACTGGGATCTGGAATGGGTGAAGACTGGAATCAATCTTTTTTAATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACGGAAGAATTATGCAAGCATTTGAAAAAAATGCGAGATTTTTCCTATACGTGCATTTGAGCTCAATTATCTCAGTCCCTATAAGAGATATCAAAAATTTGTAAACTGATAAAATGTTTATCATAATATGACCAATATTTTATCAATTGACAAATTTTTGATATCTTTAAAAAAACTGACATAAATTGGCCCGAAGTTTGAAGCCAATCG</canonical>
            <polymorphic>AAAGCCTTCACAGTAACTCCAAACTGCCAAGTCTTCATCGAAAAACTGCCAAGTCTTCAGCGAAAAATCCAATCTTTTTTCTTGCATCCCCCTCCCACTTCTCTACCAATCAATCATGCGCATTTCCAATTGGCGCCAAGGCGATCCTTCCGAAATAACAATAGAATACGAAACCCCGTCCGAGTCTTCTCAAATACACATGTCATCTCTCACTTCTTCTTTTTTGCTTTTTTGGCTCAGATTAATTTTTTTTTCTTGAAGTCTTTTTTTTTTGTTCTTTGGAAAACTTATAGGTTTTTTGTAGGGTAATTGTTGGAATGTTTTGAAGTGTTCGAAGTTGAATCAGCTGCGTCTACGGTAACCTGTTAGTGATCAAGGTGAGTCTGGAAGTTTTTGAAAAATGAGAATTTAAACTGATTTTGGGAGGACTGGGATCTGGAATGGGTGAAGACTGGAATCAATCTTTTTTAATGAAATATTTTGCTTGAATAGAAGCCCTRCTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACGGAAGAATTATGCAAGCATTTGAAAAAAATGCGAGATTTTTCCTATACGTGCATTTGAGCTCAATTATCTCAGTCCCTATAAGAGATATCAAAAATTTGTAAACTGATAAAATGTTTATCATAATATGACCAATATTTTATCAATTGACAAATTTTTGATATCTTTAAAAAAACTGACATAAATTGGCCCGAAGTTTGAAGCCAATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGACTGGAATCAATCTTTT</pcr_primer_p1>
		<pcr_primer_p2>CGTCAGTGTTCATCTAAACTTGT</pcr_primer_p2>
		<pcr_amplicon_size>348</pcr_amplicon_size>
		<canonical_amplicon>TGAAGACTGGAATCAATCTTTTTTAATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACG</canonical_amplicon>
		<polymorphic_amplicon>TGAAGACTGGAATCAATCTTTTTTAATGAAATATTTTGCTTGAATAGAAGCCCTRCTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35190</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>160524</contig_pos>
        <strand>+</strand>
        <context>AGAAGCCCTR[C/T]TGCGTTGATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTGGAATCAATCTTTTTTAATGAAATATTTTGCTTGAATAGAAGCCCTA</left_flank>
        <right_flank>TGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCCTTCACAGTAACTCCAAACTGCCAAGTCTTCATCGAAAAACTGCCAAGTCTTCAGCGAAAAATCCAATCTTTTTTCTTGCATCCCCCTCCCACTTCTCTACCAATCAATCATGCGCATTTCCAATTGGCGCCAAGGCGATCCTTCCGAAATAACAATAGAATACGAAACCCCGTCCGAGTCTTCTCAAATACACATGTCATCTCTCACTTCTTCTTTTTTGCTTTTTTGGCTCAGATTAATTTTTTTTTCTTGAAGTCTTTTTTTTTTGTTCTTTGGAAAACTTATAGGTTTTTTGTAGGGTAATTGTTGGAATGTTTTGAAGTGTTCGAAGTTGAATCAGCTGCGTCTACGGTAACCTGTTAGTGATCAAGGTGAGTCTGGAAGTTTTTGAAAAATGAGAATTTAAACTGATTTTGGGAGGACTGGGATCTGGAATGGGTGAAGACTGGAATCAATCTTTTTTAATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACGGAAGAATTATGCAAGCATTTGAAAAAAATGCGAGATTTTTCCTATACGTGCATTTGAGCTCAATTATCTCAGTCCCTATAAGAGATATCAAAAATTTGTAAACTGATAAAATGTTTATCATAATATGACCAATATTTTATCAATTGACAAATTTTTGATATCTTTAAAAAAACTGACATAAATTGGCCCGAAGTTTGAAGCCAATCGG</canonical>
            <polymorphic>AAGCCTTCACAGTAACTCCAAACTGCCAAGTCTTCATCGAAAAACTGCCAAGTCTTCAGCGAAAAATCCAATCTTTTTTCTTGCATCCCCCTCCCACTTCTCTACCAATCAATCATGCGCATTTCCAATTGGCGCCAAGGCGATCCTTCCGAAATAACAATAGAATACGAAACCCCGTCCGAGTCTTCTCAAATACACATGTCATCTCTCACTTCTTCTTTTTTGCTTTTTTGGCTCAGATTAATTTTTTTTTCTTGAAGTCTTTTTTTTTTGTTCTTTGGAAAACTTATAGGTTTTTTGTAGGGTAATTGTTGGAATGTTTTGAAGTGTTCGAAGTTGAATCAGCTGCGTCTACGGTAACCTGTTAGTGATCAAGGTGAGTCTGGAAGTTTTTGAAAAATGAGAATTTAAACTGATTTTGGGAGGACTGGGATCTGGAATGGGTGAAGACTGGAATCAATCTTTTTTAATGAAATATTTTGCTTGAATAGAAGCCCTAYTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACGGAAGAATTATGCAAGCATTTGAAAAAAATGCGAGATTTTTCCTATACGTGCATTTGAGCTCAATTATCTCAGTCCCTATAAGAGATATCAAAAATTTGTAAACTGATAAAATGTTTATCATAATATGACCAATATTTTATCAATTGACAAATTTTTGATATCTTTAAAAAAACTGACATAAATTGGCCCGAAGTTTGAAGCCAATCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGACTGGAATCAATCTTTT</pcr_primer_p1>
		<pcr_primer_p2>CGTCAGTGTTCATCTAAACTTGT</pcr_primer_p2>
		<pcr_amplicon_size>348</pcr_amplicon_size>
		<canonical_amplicon>TGAAGACTGGAATCAATCTTTTTTAATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACG</canonical_amplicon>
		<polymorphic_amplicon>TGAAGACTGGAATCAATCTTTTTTAATGAAATATTTTGCTTGAATAGAAGCCCTAYTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35191</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>160698</contig_pos>
        <strand></strand>
        <context>gaacccattg[T/C]gcctttraac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTG</left_flank>
        <right_flank>GCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGTCCGAGTCTTCTCAAATACACATGTCATCTCTCACTTCTTCTTTTTTGCTTTTTTGGCTCAGATTAATTTTTTTTTCTTGAAGTCTTTTTTTTTTGTTCTTTGGAAAACTTATAGGTTTTTTGTAGGGTAATTGTTGGAATGTTTTGAAGTGTTCGAAGTTGAATCAGCTGCGTCTACGGTAACCTGTTAGTGATCAAGGTGAGTCTGGAAGTTTTTGAAAAATGAGAATTTAAACTGATTTTGGGAGGACTGGGATCTGGAATGGGTGAAGACTGGAATCAATCTTTTTTAATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACGGAAGAATTATGCAAGCATTTGAAAAAAATGCGAGATTTTTCCTATACGTGCATTTGAGCTCAATTATCTCAGTCCCTATAAGAGATATCAAAAATTTGTAAACTGATAAAATGTTTATCATAATATGACCAATATTTTATCAATTGACAAATTTTTGATATCTTTAAAAAAACTGACATAAATTGGCCCGAAGTTTGAAGCCAATCGGCTCGAAAATTAGAGTTTTTACGGTATTTCACAATTTCTAAACTAAAATCTTAAGACTAGAAAATTCGTGACATATAATATTCTAATATTTAATACGATCTAAACTTTTGATATACAGGGTGCGGCAAAAGTATGGTAACACAAGTTTCGCGCAAGCTGGTGGGCGCAGGCGCAC</canonical>
            <polymorphic>CCGTCCGAGTCTTCTCAAATACACATGTCATCTCTCACTTCTTCTTTTTTGCTTTTTTGGCTCAGATTAATTTTTTTTTCTTGAAGTCTTTTTTTTTTGTTCTTTGGAAAACTTATAGGTTTTTTGTAGGGTAATTGTTGGAATGTTTTGAAGTGTTCGAAGTTGAATCAGCTGCGTCTACGGTAACCTGTTAGTGATCAAGGTGAGTCTGGAAGTTTTTGAAAAATGAGAATTTAAACTGATTTTGGGAGGACTGGGATCTGGAATGGGTGAAGACTGGAATCAATCTTTTTTAATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGYGCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACGGAAGAATTATGCAAGCATTTGAAAAAAATGCGAGATTTTTCCTATACGTGCATTTGAGCTCAATTATCTCAGTCCCTATAAGAGATATCAAAAATTTGTAAACTGATAAAATGTTTATCATAATATGACCAATATTTTATCAATTGACAAATTTTTGATATCTTTAAAAAAACTGACATAAATTGGCCCGAAGTTTGAAGCCAATCGGCTCGAAAATTAGAGTTTTTACGGTATTTCACAATTTCTAAACTAAAATCTTAAGACTAGAAAATTCGTGACATATAATATTCTAATATTTAATACGATCTAAACTTTTGATATACAGGGTGCGGCAAAAGTATGGTAACACAAGTTTCGCGCAAGCTGGTGGGCGCAGGCGCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>196 188 118 70 67 56 52 41 41 39 26 23 21 19 14 12 9 7 1</canonical_bands>
                <polymorphic_bands>196 188 118 70 67 67 56 52 41 39 23 21 19 14 12 9 7 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAAATATTTTGCTTGAATAGAA</pcr_primer_p1>
		<pcr_primer_p2>CGTCAGTGTTCATCTAAACTTGT</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>ATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACG</canonical_amplicon>
		<polymorphic_amplicon>ATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGYGCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35192</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>160705</contig_pos>
        <strand></strand>
        <context>ttgygccttt[A/G]aacccaawyt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTT</left_flank>
        <right_flank>AACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTG</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTCTTCTCAAATACACATGTCATCTCTCACTTCTTCTTTTTTGCTTTTTTGGCTCAGATTAATTTTTTTTTCTTGAAGTCTTTTTTTTTTGTTCTTTGGAAAACTTATAGGTTTTTTGTAGGGTAATTGTTGGAATGTTTTGAAGTGTTCGAAGTTGAATCAGCTGCGTCTACGGTAACCTGTTAGTGATCAAGGTGAGTCTGGAAGTTTTTGAAAAATGAGAATTTAAACTGATTTTGGGAGGACTGGGATCTGGAATGGGTGAAGACTGGAATCAATCTTTTTTAATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACGGAAGAATTATGCAAGCATTTGAAAAAAATGCGAGATTTTTCCTATACGTGCATTTGAGCTCAATTATCTCAGTCCCTATAAGAGATATCAAAAATTTGTAAACTGATAAAATGTTTATCATAATATGACCAATATTTTATCAATTGACAAATTTTTGATATCTTTAAAAAAACTGACATAAATTGGCCCGAAGTTTGAAGCCAATCGGCTCGAAAATTAGAGTTTTTACGGTATTTCACAATTTCTAAACTAAAATCTTAAGACTAGAAAATTCGTGACATATAATATTCTAATATTTAATACGATCTAAACTTTTGATATACAGGGTGCGGCAAAAGTATGGTAACACAAGTTTCGCGCAAGCTGGTGGGCGCAGGCGCACTTTTAGT</canonical>
            <polymorphic>AGTCTTCTCAAATACACATGTCATCTCTCACTTCTTCTTTTTTGCTTTTTTGGCTCAGATTAATTTTTTTTTCTTGAAGTCTTTTTTTTTTGTTCTTTGGAAAACTTATAGGTTTTTTGTAGGGTAATTGTTGGAATGTTTTGAAGTGTTCGAAGTTGAATCAGCTGCGTCTACGGTAACCTGTTAGTGATCAAGGTGAGTCTGGAAGTTTTTGAAAAATGAGAATTTAAACTGATTTTGGGAGGACTGGGATCTGGAATGGGTGAAGACTGGAATCAATCTTTTTTAATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTRAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACGGAAGAATTATGCAAGCATTTGAAAAAAATGCGAGATTTTTCCTATACGTGCATTTGAGCTCAATTATCTCAGTCCCTATAAGAGATATCAAAAATTTGTAAACTGATAAAATGTTTATCATAATATGACCAATATTTTATCAATTGACAAATTTTTGATATCTTTAAAAAAACTGACATAAATTGGCCCGAAGTTTGAAGCCAATCGGCTCGAAAATTAGAGTTTTTACGGTATTTCACAATTTCTAAACTAAAATCTTAAGACTAGAAAATTCGTGACATATAATATTCTAATATTTAATACGATCTAAACTTTTGATATACAGGGTGCGGCAAAAGTATGGTAACACAAGTTTCGCGCAAGCTGGTGGGCGCAGGCGCACTTTTAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>228 224 190 165 106 87</canonical_bands>
                <polymorphic_bands>252 228 224 190 106</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>190 167 165 94 92 87 60 59 47 39</canonical_bands>
                <polymorphic_bands>252 190 167 94 92 60 59 47 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAAATATTTTGCTTGAATAGAA</pcr_primer_p1>
		<pcr_primer_p2>CGTCAGTGTTCATCTAAACTTGT</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>ATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACG</canonical_amplicon>
		<polymorphic_amplicon>ATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTRAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35193</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>160713</contig_pos>
        <strand></strand>
        <context>ttraacccaa[A/T]yttckaaatg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAA</left_flank>
        <right_flank>CTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATACACATGTCATCTCTCACTTCTTCTTTTTTGCTTTTTTGGCTCAGATTAATTTTTTTTTCTTGAAGTCTTTTTTTTTTGTTCTTTGGAAAACTTATAGGTTTTTTGTAGGGTAATTGTTGGAATGTTTTGAAGTGTTCGAAGTTGAATCAGCTGCGTCTACGGTAACCTGTTAGTGATCAAGGTGAGTCTGGAAGTTTTTGAAAAATGAGAATTTAAACTGATTTTGGGAGGACTGGGATCTGGAATGGGTGAAGACTGGAATCAATCTTTTTTAATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACGGAAGAATTATGCAAGCATTTGAAAAAAATGCGAGATTTTTCCTATACGTGCATTTGAGCTCAATTATCTCAGTCCCTATAAGAGATATCAAAAATTTGTAAACTGATAAAATGTTTATCATAATATGACCAATATTTTATCAATTGACAAATTTTTGATATCTTTAAAAAAACTGACATAAATTGGCCCGAAGTTTGAAGCCAATCGGCTCGAAAATTAGAGTTTTTACGGTATTTCACAATTTCTAAACTAAAATCTTAAGACTAGAAAATTCGTGACATATAATATTCTAATATTTAATACGATCTAAACTTTTGATATACAGGGTGCGGCAAAAGTATGGTAACACAAGTTTCGCGCAAGCTGGTGGGCGCAGGCGCACTTTTAGTGTCCTGAA</canonical>
            <polymorphic>CAAATACACATGTCATCTCTCACTTCTTCTTTTTTGCTTTTTTGGCTCAGATTAATTTTTTTTTCTTGAAGTCTTTTTTTTTTGTTCTTTGGAAAACTTATAGGTTTTTTGTAGGGTAATTGTTGGAATGTTTTGAAGTGTTCGAAGTTGAATCAGCTGCGTCTACGGTAACCTGTTAGTGATCAAGGTGAGTCTGGAAGTTTTTGAAAAATGAGAATTTAAACTGATTTTGGGAGGACTGGGATCTGGAATGGGTGAAGACTGGAATCAATCTTTTTTAATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAWCTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACGGAAGAATTATGCAAGCATTTGAAAAAAATGCGAGATTTTTCCTATACGTGCATTTGAGCTCAATTATCTCAGTCCCTATAAGAGATATCAAAAATTTGTAAACTGATAAAATGTTTATCATAATATGACCAATATTTTATCAATTGACAAATTTTTGATATCTTTAAAAAAACTGACATAAATTGGCCCGAAGTTTGAAGCCAATCGGCTCGAAAATTAGAGTTTTTACGGTATTTCACAATTTCTAAACTAAAATCTTAAGACTAGAAAATTCGTGACATATAATATTCTAATATTTAATACGATCTAAACTTTTGATATACAGGGTGCGGCAAAAGTATGGTAACACAAGTTTCGCGCAAGCTGGTGGGCGCAGGCGCACTTTTAGTGTCCTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAAATATTTTGCTTGAATAGAA</pcr_primer_p1>
		<pcr_primer_p2>CGTCAGTGTTCATCTAAACTTGT</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>ATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACG</canonical_amplicon>
		<polymorphic_amplicon>ATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAWCTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35194</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>160714</contig_pos>
        <strand></strand>
        <context>traacccaaw[C/T]ttckaaatgg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAA</left_flank>
        <right_flank>TTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATACACATGTCATCTCTCACTTCTTCTTTTTTGCTTTTTTGGCTCAGATTAATTTTTTTTTCTTGAAGTCTTTTTTTTTTGTTCTTTGGAAAACTTATAGGTTTTTTGTAGGGTAATTGTTGGAATGTTTTGAAGTGTTCGAAGTTGAATCAGCTGCGTCTACGGTAACCTGTTAGTGATCAAGGTGAGTCTGGAAGTTTTTGAAAAATGAGAATTTAAACTGATTTTGGGAGGACTGGGATCTGGAATGGGTGAAGACTGGAATCAATCTTTTTTAATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACGGAAGAATTATGCAAGCATTTGAAAAAAATGCGAGATTTTTCCTATACGTGCATTTGAGCTCAATTATCTCAGTCCCTATAAGAGATATCAAAAATTTGTAAACTGATAAAATGTTTATCATAATATGACCAATATTTTATCAATTGACAAATTTTTGATATCTTTAAAAAAACTGACATAAATTGGCCCGAAGTTTGAAGCCAATCGGCTCGAAAATTAGAGTTTTTACGGTATTTCACAATTTCTAAACTAAAATCTTAAGACTAGAAAATTCGTGACATATAATATTCTAATATTTAATACGATCTAAACTTTTGATATACAGGGTGCGGCAAAAGTATGGTAACACAAGTTTCGCGCAAGCTGGTGGGCGCAGGCGCACTTTTAGTGTCCTGAAT</canonical>
            <polymorphic>AAATACACATGTCATCTCTCACTTCTTCTTTTTTGCTTTTTTGGCTCAGATTAATTTTTTTTTCTTGAAGTCTTTTTTTTTTGTTCTTTGGAAAACTTATAGGTTTTTTGTAGGGTAATTGTTGGAATGTTTTGAAGTGTTCGAAGTTGAATCAGCTGCGTCTACGGTAACCTGTTAGTGATCAAGGTGAGTCTGGAAGTTTTTGAAAAATGAGAATTTAAACTGATTTTGGGAGGACTGGGATCTGGAATGGGTGAAGACTGGAATCAATCTTTTTTAATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAAYTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACGGAAGAATTATGCAAGCATTTGAAAAAAATGCGAGATTTTTCCTATACGTGCATTTGAGCTCAATTATCTCAGTCCCTATAAGAGATATCAAAAATTTGTAAACTGATAAAATGTTTATCATAATATGACCAATATTTTATCAATTGACAAATTTTTGATATCTTTAAAAAAACTGACATAAATTGGCCCGAAGTTTGAAGCCAATCGGCTCGAAAATTAGAGTTTTTACGGTATTTCACAATTTCTAAACTAAAATCTTAAGACTAGAAAATTCGTGACATATAATATTCTAATATTTAATACGATCTAAACTTTTGATATACAGGGTGCGGCAAAAGTATGGTAACACAAGTTTCGCGCAAGCTGGTGGGCGCAGGCGCACTTTTAGTGTCCTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAAATATTTTGCTTGAATAGAA</pcr_primer_p1>
		<pcr_primer_p2>CGTCAGTGTTCATCTAAACTTGT</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>ATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACG</canonical_amplicon>
		<polymorphic_amplicon>ATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAAYTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35195</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>160718</contig_pos>
        <strand></strand>
        <context>cccaawyttc[G/T]aaatgggygg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTC</left_flank>
        <right_flank>AAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACATGTCATCTCTCACTTCTTCTTTTTTGCTTTTTTGGCTCAGATTAATTTTTTTTTCTTGAAGTCTTTTTTTTTTGTTCTTTGGAAAACTTATAGGTTTTTTGTAGGGTAATTGTTGGAATGTTTTGAAGTGTTCGAAGTTGAATCAGCTGCGTCTACGGTAACCTGTTAGTGATCAAGGTGAGTCTGGAAGTTTTTGAAAAATGAGAATTTAAACTGATTTTGGGAGGACTGGGATCTGGAATGGGTGAAGACTGGAATCAATCTTTTTTAATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACGGAAGAATTATGCAAGCATTTGAAAAAAATGCGAGATTTTTCCTATACGTGCATTTGAGCTCAATTATCTCAGTCCCTATAAGAGATATCAAAAATTTGTAAACTGATAAAATGTTTATCATAATATGACCAATATTTTATCAATTGACAAATTTTTGATATCTTTAAAAAAACTGACATAAATTGGCCCGAAGTTTGAAGCCAATCGGCTCGAAAATTAGAGTTTTTACGGTATTTCACAATTTCTAAACTAAAATCTTAAGACTAGAAAATTCGTGACATATAATATTCTAATATTTAATACGATCTAAACTTTTGATATACAGGGTGCGGCAAAAGTATGGTAACACAAGTTTCGCGCAAGCTGGTGGGCGCAGGCGCACTTTTAGTGTCCTGAATTTAT</canonical>
            <polymorphic>ACACATGTCATCTCTCACTTCTTCTTTTTTGCTTTTTTGGCTCAGATTAATTTTTTTTTCTTGAAGTCTTTTTTTTTTGTTCTTTGGAAAACTTATAGGTTTTTTGTAGGGTAATTGTTGGAATGTTTTGAAGTGTTCGAAGTTGAATCAGCTGCGTCTACGGTAACCTGTTAGTGATCAAGGTGAGTCTGGAAGTTTTTGAAAAATGAGAATTTAAACTGATTTTGGGAGGACTGGGATCTGGAATGGGTGAAGACTGGAATCAATCTTTTTTAATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCKAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACGGAAGAATTATGCAAGCATTTGAAAAAAATGCGAGATTTTTCCTATACGTGCATTTGAGCTCAATTATCTCAGTCCCTATAAGAGATATCAAAAATTTGTAAACTGATAAAATGTTTATCATAATATGACCAATATTTTATCAATTGACAAATTTTTGATATCTTTAAAAAAACTGACATAAATTGGCCCGAAGTTTGAAGCCAATCGGCTCGAAAATTAGAGTTTTTACGGTATTTCACAATTTCTAAACTAAAATCTTAAGACTAGAAAATTCGTGACATATAATATTCTAATATTTAATACGATCTAAACTTTTGATATACAGGGTGCGGCAAAAGTATGGTAACACAAGTTTCGCGCAAGCTGGTGGGCGCAGGCGCACTTTTAGTGTCCTGAATTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 361 137</canonical_bands>
                <polymorphic_bands>863 137</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>310 262 191 138 99</canonical_bands>
                <polymorphic_bands>409 262 191 138</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAAATATTTTGCTTGAATAGAA</pcr_primer_p1>
		<pcr_primer_p2>CGTCAGTGTTCATCTAAACTTGT</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>ATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACG</canonical_amplicon>
		<polymorphic_amplicon>ATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCKAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35196</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>160726</contig_pos>
        <strand></strand>
        <context>tckaaatggg[C/T]ggagcctagy</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCGAAATGGG</left_flank>
        <right_flank>GGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCTCTCACTTCTTCTTTTTTGCTTTTTTGGCTCAGATTAATTTTTTTTTCTTGAAGTCTTTTTTTTTTGTTCTTTGGAAAACTTATAGGTTTTTTGTAGGGTAATTGTTGGAATGTTTTGAAGTGTTCGAAGTTGAATCAGCTGCGTCTACGGTAACCTGTTAGTGATCAAGGTGAGTCTGGAAGTTTTTGAAAAATGAGAATTTAAACTGATTTTGGGAGGACTGGGATCTGGAATGGGTGAAGACTGGAATCAATCTTTTTTAATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACGGAAGAATTATGCAAGCATTTGAAAAAAATGCGAGATTTTTCCTATACGTGCATTTGAGCTCAATTATCTCAGTCCCTATAAGAGATATCAAAAATTTGTAAACTGATAAAATGTTTATCATAATATGACCAATATTTTATCAATTGACAAATTTTTGATATCTTTAAAAAAACTGACATAAATTGGCCCGAAGTTTGAAGCCAATCGGCTCGAAAATTAGAGTTTTTACGGTATTTCACAATTTCTAAACTAAAATCTTAAGACTAGAAAATTCGTGACATATAATATTCTAATATTTAATACGATCTAAACTTTTGATATACAGGGTGCGGCAAAAGTATGGTAACACAAGTTTCGCGCAAGCTGGTGGGCGCAGGCGCACTTTTAGTGTCCTGAATTTATATTCATTA</canonical>
            <polymorphic>CATCTCTCACTTCTTCTTTTTTGCTTTTTTGGCTCAGATTAATTTTTTTTTCTTGAAGTCTTTTTTTTTTGTTCTTTGGAAAACTTATAGGTTTTTTGTAGGGTAATTGTTGGAATGTTTTGAAGTGTTCGAAGTTGAATCAGCTGCGTCTACGGTAACCTGTTAGTGATCAAGGTGAGTCTGGAAGTTTTTGAAAAATGAGAATTTAAACTGATTTTGGGAGGACTGGGATCTGGAATGGGTGAAGACTGGAATCAATCTTTTTTAATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCGAAATGGGYGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACGGAAGAATTATGCAAGCATTTGAAAAAAATGCGAGATTTTTCCTATACGTGCATTTGAGCTCAATTATCTCAGTCCCTATAAGAGATATCAAAAATTTGTAAACTGATAAAATGTTTATCATAATATGACCAATATTTTATCAATTGACAAATTTTTGATATCTTTAAAAAAACTGACATAAATTGGCCCGAAGTTTGAAGCCAATCGGCTCGAAAATTAGAGTTTTTACGGTATTTCACAATTTCTAAACTAAAATCTTAAGACTAGAAAATTCGTGACATATAATATTCTAATATTTAATACGATCTAAACTTTTGATATACAGGGTGCGGCAAAAGTATGGTAACACAAGTTTCGCGCAAGCTGGTGGGCGCAGGCGCACTTTTAGTGTCCTGAATTTATATTCATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>502 441 57</canonical_bands>
                <polymorphic_bands>559 441</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAAATATTTTGCTTGAATAGAA</pcr_primer_p1>
		<pcr_primer_p2>CGTCAGTGTTCATCTAAACTTGT</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>ATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACG</canonical_amplicon>
		<polymorphic_amplicon>ATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCGAAATGGGYGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35197</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>160736</contig_pos>
        <strand></strand>
        <context>yggagcctag[T/C]cgtgtttata</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CGGAACCCATTGTGCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAG</left_flank>
        <right_flank>CGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTCTTTTTTGCTTTTTTGGCTCAGATTAATTTTTTTTTCTTGAAGTCTTTTTTTTTTGTTCTTTGGAAAACTTATAGGTTTTTTGTAGGGTAATTGTTGGAATGTTTTGAAGTGTTCGAAGTTGAATCAGCTGCGTCTACGGTAACCTGTTAGTGATCAAGGTGAGTCTGGAAGTTTTTGAAAAATGAGAATTTAAACTGATTTTGGGAGGACTGGGATCTGGAATGGGTGAAGACTGGAATCAATCTTTTTTAATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACGGAAGAATTATGCAAGCATTTGAAAAAAATGCGAGATTTTTCCTATACGTGCATTTGAGCTCAATTATCTCAGTCCCTATAAGAGATATCAAAAATTTGTAAACTGATAAAATGTTTATCATAATATGACCAATATTTTATCAATTGACAAATTTTTGATATCTTTAAAAAAACTGACATAAATTGGCCCGAAGTTTGAAGCCAATCGGCTCGAAAATTAGAGTTTTTACGGTATTTCACAATTTCTAAACTAAAATCTTAAGACTAGAAAATTCGTGACATATAATATTCTAATATTTAATACGATCTAAACTTTTGATATACAGGGTGCGGCAAAAGTATGGTAACACAAGTTTCGCGCAAGCTGGTGGGCGCAGGCGCACTTTTAGTGTCCTGAATTTATATTCATTATTTTCAGCAT</canonical>
            <polymorphic>TTCTTCTTTTTTGCTTTTTTGGCTCAGATTAATTTTTTTTTCTTGAAGTCTTTTTTTTTTGTTCTTTGGAAAACTTATAGGTTTTTTGTAGGGTAATTGTTGGAATGTTTTGAAGTGTTCGAAGTTGAATCAGCTGCGTCTACGGTAACCTGTTAGTGATCAAGGTGAGTCTGGAAGTTTTTGAAAAATGAGAATTTAAACTGATTTTGGGAGGACTGGGATCTGGAATGGGTGAAGACTGGAATCAATCTTTTTTAATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGYCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACGGAAGAATTATGCAAGCATTTGAAAAAAATGCGAGATTTTTCCTATACGTGCATTTGAGCTCAATTATCTCAGTCCCTATAAGAGATATCAAAAATTTGTAAACTGATAAAATGTTTATCATAATATGACCAATATTTTATCAATTGACAAATTTTTGATATCTTTAAAAAAACTGACATAAATTGGCCCGAAGTTTGAAGCCAATCGGCTCGAAAATTAGAGTTTTTACGGTATTTCACAATTTCTAAACTAAAATCTTAAGACTAGAAAATTCGTGACATATAATATTCTAATATTTAATACGATCTAAACTTTTGATATACAGGGTGCGGCAAAAGTATGGTAACACAAGTTTCGCGCAAGCTGGTGGGCGCAGGCGCACTTTTAGTGTCCTGAATTTATATTCATTATTTTCAGCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAAATATTTTGCTTGAATAGAA</pcr_primer_p1>
		<pcr_primer_p2>CGTCAGTGTTCATCTAAACTTGT</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>ATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACG</canonical_amplicon>
		<polymorphic_amplicon>ATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGYCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35198</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>160747</contig_pos>
        <strand></strand>
        <context>cgtgtttata[T/C]tcattttgta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTGCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATA</left_flank>
        <right_flank>TCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTTTTTTGGCTCAGATTAATTTTTTTTTCTTGAAGTCTTTTTTTTTTGTTCTTTGGAAAACTTATAGGTTTTTTGTAGGGTAATTGTTGGAATGTTTTGAAGTGTTCGAAGTTGAATCAGCTGCGTCTACGGTAACCTGTTAGTGATCAAGGTGAGTCTGGAAGTTTTTGAAAAATGAGAATTTAAACTGATTTTGGGAGGACTGGGATCTGGAATGGGTGAAGACTGGAATCAATCTTTTTTAATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACGGAAGAATTATGCAAGCATTTGAAAAAAATGCGAGATTTTTCCTATACGTGCATTTGAGCTCAATTATCTCAGTCCCTATAAGAGATATCAAAAATTTGTAAACTGATAAAATGTTTATCATAATATGACCAATATTTTATCAATTGACAAATTTTTGATATCTTTAAAAAAACTGACATAAATTGGCCCGAAGTTTGAAGCCAATCGGCTCGAAAATTAGAGTTTTTACGGTATTTCACAATTTCTAAACTAAAATCTTAAGACTAGAAAATTCGTGACATATAATATTCTAATATTTAATACGATCTAAACTTTTGATATACAGGGTGCGGCAAAAGTATGGTAACACAAGTTTCGCGCAAGCTGGTGGGCGCAGGCGCACTTTTAGTGTCCTGAATTTATATTCATTATTTTCAGCATGTCTTAATTAC</canonical>
            <polymorphic>TGCTTTTTTGGCTCAGATTAATTTTTTTTTCTTGAAGTCTTTTTTTTTTGTTCTTTGGAAAACTTATAGGTTTTTTGTAGGGTAATTGTTGGAATGTTTTGAAGTGTTCGAAGTTGAATCAGCTGCGTCTACGGTAACCTGTTAGTGATCAAGGTGAGTCTGGAAGTTTTTGAAAAATGAGAATTTAAACTGATTTTGGGAGGACTGGGATCTGGAATGGGTGAAGACTGGAATCAATCTTTTTTAATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATAYTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACGGAAGAATTATGCAAGCATTTGAAAAAAATGCGAGATTTTTCCTATACGTGCATTTGAGCTCAATTATCTCAGTCCCTATAAGAGATATCAAAAATTTGTAAACTGATAAAATGTTTATCATAATATGACCAATATTTTATCAATTGACAAATTTTTGATATCTTTAAAAAAACTGACATAAATTGGCCCGAAGTTTGAAGCCAATCGGCTCGAAAATTAGAGTTTTTACGGTATTTCACAATTTCTAAACTAAAATCTTAAGACTAGAAAATTCGTGACATATAATATTCTAATATTTAATACGATCTAAACTTTTGATATACAGGGTGCGGCAAAAGTATGGTAACACAAGTTTCGCGCAAGCTGGTGGGCGCAGGCGCACTTTTAGTGTCCTGAATTTATATTCATTATTTTCAGCATGTCTTAATTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAAATATTTTGCTTGAATAGAA</pcr_primer_p1>
		<pcr_primer_p2>CGTCAGTGTTCATCTAAACTTGT</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>ATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATATTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACG</canonical_amplicon>
		<polymorphic_amplicon>ATGAAATATTTTGCTTGAATAGAAGCCCTACTGCGTTGATTTTTTTAAAGAAATTTTTATCAAAATTGTAAAAATACCGTAACTCAGTCAGTTTTGATTCAAACCCGACAATATAGAAATATATCGATTTCTCATCATGTAGTCTTCAAAATGCGTATAAATACGCCTAGGCACCGCCCACTTTGAAAAATTCGGAACCCATTGTGCCTTTAAACCCAAACTTCGAAATGGGCGGAGCCTAGTCGTGTTTATAYTCATTTTGTAGCCAGGGATAAAATATATTTGAAAATAAAAGTTTAAACAAGTTTAGATGAACACTGACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35209</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>221801</contig_pos>
        <strand>+</strand>
        <context>ccacttggcc[A/T]acaggactct</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCCCATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCACTTGGCC</left_flank>
        <right_flank>ACAGGACTCTAGTCGGCCCGCCTGGTCATTTTACTTTTTTATTTGTACAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAAATGCCGGATTTTCTGGAATAACTTACTTTGCATTCATTATCGTCCTCGTCCGGATCGCTGGTTTGGTCTTCGCGTTCGCTGAGGTCCATCTGGAAGAAAAGAATTTGTAGGGTGTTTGCTATTTGAACGGAAAAATGGAGGAGGAGAAGCTAACAAAACACGCAACGACACTCAAAATCAATAGATTGGTTCGGCTAGCTTGTTTTGATGAGCGCGAGGAGGAGGAGACGGCGCAGCGAAAACCACGAGACGCGCCGTTCGTTTCTAGCCGCCAGGGAGCGGAAACAATAACGAAAAAACAAAACATATCGGAATACATAACACGAAAATAAATAGTTTTTTTGAATTATGACTGGTGAGGAGGAGTGAAAAAAGGGATTCATGTCAAAAATTGGTTTATGAGATTTATAGAATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCACTTGGCCTACAGGACTCTAGTCGGCCCGCCTGGTCATTTTACTTTTTTATTTGTACAGGTCCCATTTCTTGCCAAATTATCTATCGATTTCCCCCCATGCATTGCAAATAAATATATTATTATTATTATTATTACAGTGGGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAATTTGATAACAAAGAAAGCGCTTTCAAAGACGAAACAATCAACAAATTAGTTTATTATTAATTTGGGACCTTCAGATTCCCTTTTTCGTTGTTTTTCCTGAAGGATCGCTTTCTAGCATGAAATTCATGTTGAAATAATTGAAAATATGGTAAAAACAACCGGAAAAACTGAAATTTGCATCAAAAAATAAAACAATATTGTTTTGAAAATCTCAGTTTACCGCAAACACCGCCCACTCATAGTGCACTATTTCGCAACACTTTCCAAAAAGTCCGCAAGTTTGGGTGGCGGTATTTGCAGACCTAGTAGAAAATATATGTTTTT</canonical>
            <polymorphic>TAAAAATGCCGGATTTTCTGGAATAACTTACTTTGCATTCATTATCGTCCTCGTCCGGATCGCTGGTTTGGTCTTCGCGTTCGCTGAGGTCCATCTGGAAGAAAAGAATTTGTAGGGTGTTTGCTATTTGAACGGAAAAATGGAGGAGGAGAAGCTAACAAAACACGCAACGACACTCAAAATCAATAGATTGGTTCGGCTAGCTTGTTTTGATGAGCGCGAGGAGGAGGAGACGGCGCAGCGAAAACCACGAGACGCGCCGTTCGTTTCTAGCCGCCAGGGAGCGGAAACAATAACGAAAAAACAAAACATATCGGAATACATAACACGAAAATAAATAGTTTTTTTGAATTATGACTGGTGAGGAGGAGTGAAAAAAGGGATTCATGTCAAAAATTGGTTTATGAGATTTATAGAATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCACTTGGCCWACAGGACTCTAGTCGGCCCGCCTGGTCATTTTACTTTTTTATTTGTACAGGTCCCATTTCTTGCCAAATTATCTATCGATTTCCCCCCATGCATTGCAAATAAATATATTATTATTATTATTATTACAGTGGGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAATTTGATAACAAAGAAAGCGCTTTCAAAGACGAAACAATCAACAAATTAGTTTATTATTAATTTGGGACCTTCAGATTCCCTTTTTCGTTGTTTTTCCTGAAGGATCGCTTTCTAGCATGAAATTCATGTTGAAATAATTGAAAATATGGTAAAAACAACCGGAAAAACTGAAATTTGCATCAAAAAATAAAACAATATTGTTTTGAAAATCTCAGTTTACCGCAAACACCGCCCACTCATAGTGCACTATTTCGCAACACTTTCCAAAAAGTCCGCAAGTTTGGGTGGCGGTATTTGCAGACCTAGTAGAAAATATATGTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGGGATTCATGTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCATATAATACGGAATTTGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>AAAAGGGATTCATGTCAAAAATTGGTTTATGAGATTTATAGAATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCACTTGGCCTACAGGACTCTAGTCGGCCCGCCTGGTCATTTTACTTTTTTATTTGTACAGGTCCCATTTCTTGCCAAATTATCTATCGATTTCCCCCCATGCATTGCAAATAAATATATTATTATTATTATTATTACAGTGGGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAGGGATTCATGTCAAAAATTGGTTTATGAGATTTATAGAATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCACTTGGCCWACAGGACTCTAGTCGGCCCGCCTGGTCATTTTACTTTTTTATTTGTACAGGTCCCATTTCTTGCCAAATTATCTATCGATTTCCCCCCATGCATTGCAAATAAATATATTATTATTATTATTATTACAGTGGGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35210</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>221953</contig_pos>
        <strand>+</strand>
        <context>TGAAACAAAG[A/G]TGAACAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATATATTATTATTATTATTATTACAGTGGGTGGACTCATGAAACAAAG</left_flank>
        <right_flank>TGAACAAATTCCGTATTATATGAATTTGATAACAAAGAAAGCGCTTTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTAACAAAACACGCAACGACACTCAAAATCAATAGATTGGTTCGGCTAGCTTGTTTTGATGAGCGCGAGGAGGAGGAGACGGCGCAGCGAAAACCACGAGACGCGCCGTTCGTTTCTAGCCGCCAGGGAGCGGAAACAATAACGAAAAAACAAAACATATCGGAATACATAACACGAAAATAAATAGTTTTTTTGAATTATGACTGGTGAGGAGGAGTGAAAAAAGGGATTCATGTCAAAAATTGGTTTATGAGATTTATAGAATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCACTTGGCCTACAGGACTCTAGTCGGCCCGCCTGGTCATTTTACTTTTTTATTTGTACAGGTCCCATTTCTTGCCAAATTATCTATCGATTTCCCCCCATGCATTGCAAATAAATATATTATTATTATTATTATTACAGTGGGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAATTTGATAACAAAGAAAGCGCTTTCAAAGACGAAACAATCAACAAATTAGTTTATTATTAATTTGGGACCTTCAGATTCCCTTTTTCGTTGTTTTTCCTGAAGGATCGCTTTCTAGCATGAAATTCATGTTGAAATAATTGAAAATATGGTAAAAACAACCGGAAAAACTGAAATTTGCATCAAAAAATAAAACAATATTGTTTTGAAAATCTCAGTTTACCGCAAACACCGCCCACTCATAGTGCACTATTTCGCAACACTTTCCAAAAAGTCCGCAAGTTTGGGTGGCGGTATTTGCAGACCTAGTAGAAAATATATGTTTTTTTTCGCAAATAAATATTTTGTTTCCAAAAAATACATGTTCTAGGTTCCGAAAATGTATAAATTGACACAAGAGGAGTATGAAAAGCACCGAGGCGCACTCTTCAGACATTTTTTGCCAGATGAGCCGGGGACAAGCAGAGATGGTTGAAAAG</canonical>
            <polymorphic>AGCTAACAAAACACGCAACGACACTCAAAATCAATAGATTGGTTCGGCTAGCTTGTTTTGATGAGCGCGAGGAGGAGGAGACGGCGCAGCGAAAACCACGAGACGCGCCGTTCGTTTCTAGCCGCCAGGGAGCGGAAACAATAACGAAAAAACAAAACATATCGGAATACATAACACGAAAATAAATAGTTTTTTTGAATTATGACTGGTGAGGAGGAGTGAAAAAAGGGATTCATGTCAAAAATTGGTTTATGAGATTTATAGAATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCACTTGGCCTACAGGACTCTAGTCGGCCCGCCTGGTCATTTTACTTTTTTATTTGTACAGGTCCCATTTCTTGCCAAATTATCTATCGATTTCCCCCCATGCATTGCAAATAAATATATTATTATTATTATTATTACAGTGGGTGGACTCATGAAACAAAGRTGAACAAATTCCGTATTATATGAATTTGATAACAAAGAAAGCGCTTTCAAAGACGAAACAATCAACAAATTAGTTTATTATTAATTTGGGACCTTCAGATTCCCTTTTTCGTTGTTTTTCCTGAAGGATCGCTTTCTAGCATGAAATTCATGTTGAAATAATTGAAAATATGGTAAAAACAACCGGAAAAACTGAAATTTGCATCAAAAAATAAAACAATATTGTTTTGAAAATCTCAGTTTACCGCAAACACCGCCCACTCATAGTGCACTATTTCGCAACACTTTCCAAAAAGTCCGCAAGTTTGGGTGGCGGTATTTGCAGACCTAGTAGAAAATATATGTTTTTTTTCGCAAATAAATATTTTGTTTCCAAAAAATACATGTTCTAGGTTCCGAAAATGTATAAATTGACACAAGAGGAGTATGAAAAGCACCGAGGCGCACTCTTCAGACATTTTTTGCCAGATGAGCCGGGGACAAGCAGAGATGGTTGAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGATTCATGTCAAAAATTG</pcr_primer_p1>
		<pcr_primer_p2>GAATCTGAAGGTCCCAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>GGGATTCATGTCAAAAATTGGTTTATGAGATTTATAGAATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCACTTGGCCTACAGGACTCTAGTCGGCCCGCCTGGTCATTTTACTTTTTTATTTGTACAGGTCCCATTTCTTGCCAAATTATCTATCGATTTCCCCCCATGCATTGCAAATAAATATATTATTATTATTATTATTACAGTGGGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAATTTGATAACAAAGAAAGCGCTTTCAAAGACGAAACAATCAACAAATTAGTTTATTATTAATTTGGGACCTTCAGATTC</canonical_amplicon>
		<polymorphic_amplicon>GGGATTCATGTCAAAAATTGGTTTATGAGATTTATAGAATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCACTTGGCCTACAGGACTCTAGTCGGCCCGCCTGGTCATTTTACTTTTTTATTTGTACAGGTCCCATTTCTTGCCAAATTATCTATCGATTTCCCCCCATGCATTGCAAATAAATATATTATTATTATTATTATTACAGTGGGTGGACTCATGAAACAAAGRTGAACAAATTCCGTATTATATGAATTTGATAACAAAGAAAGCGCTTTCAAAGACGAAACAATCAACAAATTAGTTTATTATTAATTTGGGACCTTCAGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35211</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>222071</contig_pos>
        <strand>+</strand>
        <context>TTCGTTGTTT[G/T]TCCTGYAGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTAGTTTATTATTAATTTGGGACCTTCAGATTCCCTTTTTCGTTGTTT</left_flank>
        <right_flank>TCCTGAAGGATCGCTTTCTAGCATGAAATTCATGTTGAAATAATTGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGCCGCCAGGGAGCGGAAACAATAACGAAAAAACAAAACATATCGGAATACATAACACGAAAATAAATAGTTTTTTTGAATTATGACTGGTGAGGAGGAGTGAAAAAAGGGATTCATGTCAAAAATTGGTTTATGAGATTTATAGAATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCACTTGGCCTACAGGACTCTAGTCGGCCCGCCTGGTCATTTTACTTTTTTATTTGTACAGGTCCCATTTCTTGCCAAATTATCTATCGATTTCCCCCCATGCATTGCAAATAAATATATTATTATTATTATTATTACAGTGGGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAATTTGATAACAAAGAAAGCGCTTTCAAAGACGAAACAATCAACAAATTAGTTTATTATTAATTTGGGACCTTCAGATTCCCTTTTTCGTTGTTTTTCCTGAAGGATCGCTTTCTAGCATGAAATTCATGTTGAAATAATTGAAAATATGGTAAAAACAACCGGAAAAACTGAAATTTGCATCAAAAAATAAAACAATATTGTTTTGAAAATCTCAGTTTACCGCAAACACCGCCCACTCATAGTGCACTATTTCGCAACACTTTCCAAAAAGTCCGCAAGTTTGGGTGGCGGTATTTGCAGACCTAGTAGAAAATATATGTTTTTTTTCGCAAATAAATATTTTGTTTCCAAAAAATACATGTTCTAGGTTCCGAAAATGTATAAATTGACACAAGAGGAGTATGAAAAGCACCGAGGCGCACTCTTCAGACATTTTTTGCCAGATGAGCCGGGGACAAGCAGAGATGGTTGAAAAGAAACTGAACAAAATAAATATTGAAAAATGTTGGAAATTCAGGAAACCGGGGAGGAATCAAGACAGCGGCGCAAGAATTGATAGAAACGAAAAGGAAATCTATTGAGAGCTATTTCAGT</canonical>
            <polymorphic>TAGCCGCCAGGGAGCGGAAACAATAACGAAAAAACAAAACATATCGGAATACATAACACGAAAATAAATAGTTTTTTTGAATTATGACTGGTGAGGAGGAGTGAAAAAAGGGATTCATGTCAAAAATTGGTTTATGAGATTTATAGAATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCACTTGGCCTACAGGACTCTAGTCGGCCCGCCTGGTCATTTTACTTTTTTATTTGTACAGGTCCCATTTCTTGCCAAATTATCTATCGATTTCCCCCCATGCATTGCAAATAAATATATTATTATTATTATTATTACAGTGGGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAATTTGATAACAAAGAAAGCGCTTTCAAAGACGAAACAATCAACAAATTAGTTTATTATTAATTTGGGACCTTCAGATTCCCTTTTTCGTTGTTTKTCCTGAAGGATCGCTTTCTAGCATGAAATTCATGTTGAAATAATTGAAAATATGGTAAAAACAACCGGAAAAACTGAAATTTGCATCAAAAAATAAAACAATATTGTTTTGAAAATCTCAGTTTACCGCAAACACCGCCCACTCATAGTGCACTATTTCGCAACACTTTCCAAAAAGTCCGCAAGTTTGGGTGGCGGTATTTGCAGACCTAGTAGAAAATATATGTTTTTTTTCGCAAATAAATATTTTGTTTCCAAAAAATACATGTTCTAGGTTCCGAAAATGTATAAATTGACACAAGAGGAGTATGAAAAGCACCGAGGCGCACTCTTCAGACATTTTTTGCCAGATGAGCCGGGGACAAGCAGAGATGGTTGAAAAGAAACTGAACAAAATAAATATTGAAAAATGTTGGAAATTCAGGAAACCGGGGAGGAATCAAGACAGCGGCGCAAGAATTGATAGAAACGAAAAGGAAATCTATTGAGAGCTATTTCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGGACTCATGAAACAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGATGCAAATTTCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>GGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAATTTGATAACAAAGAAAGCGCTTTCAAAGACGAAACAATCAACAAATTAGTTTATTATTAATTTGGGACCTTCAGATTCCCTTTTTCGTTGTTTTTCCTGAAGGATCGCTTTCTAGCATGAAATTCATGTTGAAATAATTGAAAATATGGTAAAAACAACCGGAAAAACTGAAATTTGCATCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAATTTGATAACAAAGAAAGCGCTTTCAAAGACGAAACAATCAACAAATTAGTTTATTATTAATTTGGGACCTTCAGATTCCCTTTTTCGTTGTTTKTCCTGAAGGATCGCTTTCTAGCATGAAATTCATGTTGAAATAATTGAAAATATGGTAAAAACAACCGGAAAAACTGAAATTTGCATCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35212</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>222077</contig_pos>
        <strand>+</strand>
        <context>GTTTKTCCTG[C/T]AGGATCGCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTATTATTAATTTGGGACCTTCAGATTCCCTTTTTCGTTGTTTTTCCTG</left_flank>
        <right_flank>AGGATCGCTTTCTAGCATGAAATTCATGTTGAAATAATTGAAAATATGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGGGAGCGGAAACAATAACGAAAAAACAAAACATATCGGAATACATAACACGAAAATAAATAGTTTTTTTGAATTATGACTGGTGAGGAGGAGTGAAAAAAGGGATTCATGTCAAAAATTGGTTTATGAGATTTATAGAATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCACTTGGCCTACAGGACTCTAGTCGGCCCGCCTGGTCATTTTACTTTTTTATTTGTACAGGTCCCATTTCTTGCCAAATTATCTATCGATTTCCCCCCATGCATTGCAAATAAATATATTATTATTATTATTATTACAGTGGGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAATTTGATAACAAAGAAAGCGCTTTCAAAGACGAAACAATCAACAAATTAGTTTATTATTAATTTGGGACCTTCAGATTCCCTTTTTCGTTGTTTTTCCTGAAGGATCGCTTTCTAGCATGAAATTCATGTTGAAATAATTGAAAATATGGTAAAAACAACCGGAAAAACTGAAATTTGCATCAAAAAATAAAACAATATTGTTTTGAAAATCTCAGTTTACCGCAAACACCGCCCACTCATAGTGCACTATTTCGCAACACTTTCCAAAAAGTCCGCAAGTTTGGGTGGCGGTATTTGCAGACCTAGTAGAAAATATATGTTTTTTTTCGCAAATAAATATTTTGTTTCCAAAAAATACATGTTCTAGGTTCCGAAAATGTATAAATTGACACAAGAGGAGTATGAAAAGCACCGAGGCGCACTCTTCAGACATTTTTTGCCAGATGAGCCGGGGACAAGCAGAGATGGTTGAAAAGAAACTGAACAAAATAAATATTGAAAAATGTTGGAAATTCAGGAAACCGGGGAGGAATCAAGACAGCGGCGCAAGAATTGATAGAAACGAAAAGGAAATCTATTGAGAGCTATTTCAGTCGATTT</canonical>
            <polymorphic>CCAGGGAGCGGAAACAATAACGAAAAAACAAAACATATCGGAATACATAACACGAAAATAAATAGTTTTTTTGAATTATGACTGGTGAGGAGGAGTGAAAAAAGGGATTCATGTCAAAAATTGGTTTATGAGATTTATAGAATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCATTCACAGTTGCTGCATATTGCAATGCAAGCAGTCCCACTTGGCCTACAGGACTCTAGTCGGCCCGCCTGGTCATTTTACTTTTTTATTTGTACAGGTCCCATTTCTTGCCAAATTATCTATCGATTTCCCCCCATGCATTGCAAATAAATATATTATTATTATTATTATTACAGTGGGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAATTTGATAACAAAGAAAGCGCTTTCAAAGACGAAACAATCAACAAATTAGTTTATTATTAATTTGGGACCTTCAGATTCCCTTTTTCGTTGTTTTTCCTGYAGGATCGCTTTCTAGCATGAAATTCATGTTGAAATAATTGAAAATATGGTAAAAACAACCGGAAAAACTGAAATTTGCATCAAAAAATAAAACAATATTGTTTTGAAAATCTCAGTTTACCGCAAACACCGCCCACTCATAGTGCACTATTTCGCAACACTTTCCAAAAAGTCCGCAAGTTTGGGTGGCGGTATTTGCAGACCTAGTAGAAAATATATGTTTTTTTTCGCAAATAAATATTTTGTTTCCAAAAAATACATGTTCTAGGTTCCGAAAATGTATAAATTGACACAAGAGGAGTATGAAAAGCACCGAGGCGCACTCTTCAGACATTTTTTGCCAGATGAGCCGGGGACAAGCAGAGATGGTTGAAAAGAAACTGAACAAAATAAATATTGAAAAATGTTGGAAATTCAGGAAACCGGGGAGGAATCAAGACAGCGGCGCAAGAATTGATAGAAACGAAAAGGAAATCTATTGAGAGCTATTTCAGTCGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>419 364 132 66 19</canonical_bands>
                <polymorphic_bands>551 364 66 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGGACTCATGAAACAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGATGCAAATTTCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>GGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAATTTGATAACAAAGAAAGCGCTTTCAAAGACGAAACAATCAACAAATTAGTTTATTATTAATTTGGGACCTTCAGATTCCCTTTTTCGTTGTTTTTCCTGAAGGATCGCTTTCTAGCATGAAATTCATGTTGAAATAATTGAAAATATGGTAAAAACAACCGGAAAAACTGAAATTTGCATCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTGGACTCATGAAACAAAGTTGAACAAATTCCGTATTATATGAATTTGATAACAAAGAAAGCGCTTTCAAAGACGAAACAATCAACAAATTAGTTTATTATTAATTTGGGACCTTCAGATTCCCTTTTTCGTTGTTTTTCCTGYAGGATCGCTTTCTAGCATGAAATTCATGTTGAAATAATTGAAAATATGGTAAAAACAACCGGAAAAACTGAAATTTGCATCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35213</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>235175</contig_pos>
        <strand></strand>
        <context>acttttgacc[A/G]agttctgctt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCGTCCGTTTTTGAGCCGCCGATCATCCGGTTTTCCTAACTTTTGACC</left_flank>
        <right_flank>AGTTCTGCTTTTTTAAACTACATTAAATTTTATTGTATCAGGCTAAAAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCATCCGTTTCAAATAGTTAACTTTTTGTGGACCACCTGTACAACGATTTTGAAGTTCCTGGGGCACAAGGGGTACTAAACCCTCAATTTAGATATACAAAACAATTGAAAAAGTTAAATTTAGTTCTTCAGTACCTATCAGATTTATGTCACTGGCTGGTAATTAGCACATCATGTCAGAAACCATTTTTCTTTGAGTAAACCGACCTAATTGCTCTCTTTAATTGATTTTTTTTCATTCTCTTACCCTGTCTTTTCCTGTCATATTGGTCCGACAGCGTGAGCCGCTCATCGTCCGTTTTTAACAATTTCAAACTGAATACGTCCGAATAGTGGTAGATACATATTTAATTGTGTTATTTATCACTTTTATTAGCAAAATTATTATATACAGGACAGAACAAACTTTTAAATAAATTTACCAACTTCCCGTTTTACTGAAATTGCGTTTCGTCCGTTTTTGAGCCGCCGATCATCCGGTTTTCCTAACTTTTGACCAAGTTCTGCTTTTTTAAACTACATTAAATTTTATTGTATCAGGCTAAAAAATTTAAACCCCACTGAACAAAAATATAGAGCTTCGATTTCGTAGTTGACAACTTTTTCGTAATAATGCATCCAACTGGAATATCTTTTGTCTGGTACAGTAGGTCAGCTACCCATTTTTGGAAAGCGGACCAGCGACATGAGATGCATTGCTTGAAAGCAACCAAATGCCAAAACTTCCTAAAAATGGTACTGTAGGTTAGATACCGATTCTTAGTATGCAGAAAATTTTTGTTCTCTATGATACCTGCTGGGCAGCTGCCCTCACCCATTTATGACTGACAAAAAAGACCAATTAGCCCCTCCTACCTTGCCACGTCACAACTACCCCTGCCTTCTTCTTTTTCCTATGTCTTATCGTTGCTTCGTTCGCTATTAAACATCCTATCCATGGTTCTCTGAAAATGCGATCTTTCCAACCTTTTCCTCCTGTCTCATTGTCCAATTCCTTAT</canonical>
            <polymorphic>ATCATCCGTTTCAAATAGTTAACTTTTTGTGGACCACCTGTACAACGATTTTGAAGTTCCTGGGGCACAAGGGGTACTAAACCCTCAATTTAGATATACAAAACAATTGAAAAAGTTAAATTTAGTTCTTCAGTACCTATCAGATTTATGTCACTGGCTGGTAATTAGCACATCATGTCAGAAACCATTTTTCTTTGAGTAAACCGACCTAATTGCTCTCTTTAATTGATTTTTTTTCATTCTCTTACCCTGTCTTTTCCTGTCATATTGGTCCGACAGCGTGAGCCGCTCATCGTCCGTTTTTAACAATTTCAAACTGAATACGTCCGAATAGTGGTAGATACATATTTAATTGTGTTATTTATCACTTTTATTAGCAAAATTATTATATACAGGACAGAACAAACTTTTAAATAAATTTACCAACTTCCCGTTTTACTGAAATTGCGTTTCGTCCGTTTTTGAGCCGCCGATCATCCGGTTTTCCTAACTTTTGACCRAGTTCTGCTTTTTTAAACTACATTAAATTTTATTGTATCAGGCTAAAAAATTTAAACCCCACTGAACAAAAATATAGAGCTTCGATTTCGTAGTTGACAACTTTTTCGTAATAATGCATCCAACTGGAATATCTTTTGTCTGGTACAGTAGGTCAGCTACCCATTTTTGGAAAGCGGACCAGCGACATGAGATGCATTGCTTGAAAGCAACCAAATGCCAAAACTTCCTAAAAATGGTACTGTAGGTTAGATACCGATTCTTAGTATGCAGAAAATTTTTGTTCTCTATGATACCTGCTGGGCAGCTGCCCTCACCCATTTATGACTGACAAAAAAGACCAATTAGCCCCTCCTACCTTGCCACGTCACAACTACCCCTGCCTTCTTCTTTTTCCTATGTCTTATCGTTGCTTCGTTCGCTATTAAACATCCTATCCATGGTTCTCTGAAAATGCGATCTTTCCAACCTTTTCCTCCTGTCTCATTGTCCAATTCCTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCCGTTTTACTGAAATTG</pcr_primer_p1>
		<pcr_primer_p2>CTGACCTACTGTACCAGACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>TTCCCGTTTTACTGAAATTGCGTTTCGTCCGTTTTTGAGCCGCCGATCATCCGGTTTTCCTAACTTTTGACCAAGTTCTGCTTTTTTAAACTACATTAAATTTTATTGTATCAGGCTAAAAAATTTAAACCCCACTGAACAAAAATATAGAGCTTCGATTTCGTAGTTGACAACTTTTTCGTAATAATGCATCCAACTGGAATATCTTTTGTCTGGTACAGTAGGTCAG</canonical_amplicon>
		<polymorphic_amplicon>TTCCCGTTTTACTGAAATTGCGTTTCGTCCGTTTTTGAGCCGCCGATCATCCGGTTTTCCTAACTTTTGACCRAGTTCTGCTTTTTTAAACTACATTAAATTTTATTGTATCAGGCTAAAAAATTTAAACCCCACTGAACAAAAATATAGAGCTTCGATTTCGTAGTTGACAACTTTTTCGTAATAATGCATCCAACTGGAATATCTTTTGTCTGGTACAGTAGGTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35214</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>235211</contig_pos>
        <strand></strand>
        <context>aattttattg[T/G]atcaggctaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CCTAACTTTTGACCAAGTTCTGCTTTTTTAAACTACATTAAATTTTATTG</left_flank>
        <right_flank>ATCAGGCTAAAAAATTTAAACCCCACTGAACAAAAATATAGAGCTTCGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGTACAACGATTTTGAAGTTCCTGGGGCACAAGGGGTACTAAACCCTCAATTTAGATATACAAAACAATTGAAAAAGTTAAATTTAGTTCTTCAGTACCTATCAGATTTATGTCACTGGCTGGTAATTAGCACATCATGTCAGAAACCATTTTTCTTTGAGTAAACCGACCTAATTGCTCTCTTTAATTGATTTTTTTTCATTCTCTTACCCTGTCTTTTCCTGTCATATTGGTCCGACAGCGTGAGCCGCTCATCGTCCGTTTTTAACAATTTCAAACTGAATACGTCCGAATAGTGGTAGATACATATTTAATTGTGTTATTTATCACTTTTATTAGCAAAATTATTATATACAGGACAGAACAAACTTTTAAATAAATTTACCAACTTCCCGTTTTACTGAAATTGCGTTTCGTCCGTTTTTGAGCCGCCGATCATCCGGTTTTCCTAACTTTTGACCAAGTTCTGCTTTTTTAAACTACATTAAATTTTATTGTATCAGGCTAAAAAATTTAAACCCCACTGAACAAAAATATAGAGCTTCGATTTCGTAGTTGACAACTTTTTCGTAATAATGCATCCAACTGGAATATCTTTTGTCTGGTACAGTAGGTCAGCTACCCATTTTTGGAAAGCGGACCAGCGACATGAGATGCATTGCTTGAAAGCAACCAAATGCCAAAACTTCCTAAAAATGGTACTGTAGGTTAGATACCGATTCTTAGTATGCAGAAAATTTTTGTTCTCTATGATACCTGCTGGGCAGCTGCCCTCACCCATTTATGACTGACAAAAAAGACCAATTAGCCCCTCCTACCTTGCCACGTCACAACTACCCCTGCCTTCTTCTTTTTCCTATGTCTTATCGTTGCTTCGTTCGCTATTAAACATCCTATCCATGGTTCTCTGAAAATGCGATCTTTCCAACCTTTTCCTCCTGTCTCATTGTCCAATTCCTTATTTCATGCTTCCCCTTCGTTACTCGTTCCATCTACAA</canonical>
            <polymorphic>CCTGTACAACGATTTTGAAGTTCCTGGGGCACAAGGGGTACTAAACCCTCAATTTAGATATACAAAACAATTGAAAAAGTTAAATTTAGTTCTTCAGTACCTATCAGATTTATGTCACTGGCTGGTAATTAGCACATCATGTCAGAAACCATTTTTCTTTGAGTAAACCGACCTAATTGCTCTCTTTAATTGATTTTTTTTCATTCTCTTACCCTGTCTTTTCCTGTCATATTGGTCCGACAGCGTGAGCCGCTCATCGTCCGTTTTTAACAATTTCAAACTGAATACGTCCGAATAGTGGTAGATACATATTTAATTGTGTTATTTATCACTTTTATTAGCAAAATTATTATATACAGGACAGAACAAACTTTTAAATAAATTTACCAACTTCCCGTTTTACTGAAATTGCGTTTCGTCCGTTTTTGAGCCGCCGATCATCCGGTTTTCCTAACTTTTGACCAAGTTCTGCTTTTTTAAACTACATTAAATTTTATTGKATCAGGCTAAAAAATTTAAACCCCACTGAACAAAAATATAGAGCTTCGATTTCGTAGTTGACAACTTTTTCGTAATAATGCATCCAACTGGAATATCTTTTGTCTGGTACAGTAGGTCAGCTACCCATTTTTGGAAAGCGGACCAGCGACATGAGATGCATTGCTTGAAAGCAACCAAATGCCAAAACTTCCTAAAAATGGTACTGTAGGTTAGATACCGATTCTTAGTATGCAGAAAATTTTTGTTCTCTATGATACCTGCTGGGCAGCTGCCCTCACCCATTTATGACTGACAAAAAAGACCAATTAGCCCCTCCTACCTTGCCACGTCACAACTACCCCTGCCTTCTTCTTTTTCCTATGTCTTATCGTTGCTTCGTTCGCTATTAAACATCCTATCCATGGTTCTCTGAAAATGCGATCTTTCCAACCTTTTCCTCCTGTCTCATTGTCCAATTCCTTATTTCATGCTTCCCCTTCGTTACTCGTTCCATCTACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCCGTTTTACTGAAATTG</pcr_primer_p1>
		<pcr_primer_p2>CTGACCTACTGTACCAGACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>TTCCCGTTTTACTGAAATTGCGTTTCGTCCGTTTTTGAGCCGCCGATCATCCGGTTTTCCTAACTTTTGACCAAGTTCTGCTTTTTTAAACTACATTAAATTTTATTGTATCAGGCTAAAAAATTTAAACCCCACTGAACAAAAATATAGAGCTTCGATTTCGTAGTTGACAACTTTTTCGTAATAATGCATCCAACTGGAATATCTTTTGTCTGGTACAGTAGGTCAG</canonical_amplicon>
		<polymorphic_amplicon>TTCCCGTTTTACTGAAATTGCGTTTCGTCCGTTTTTGAGCCGCCGATCATCCGGTTTTCCTAACTTTTGACCAAGTTCTGCTTTTTTAAACTACATTAAATTTTATTGKATCAGGCTAAAAAATTTAAACCCCACTGAACAAAAATATAGAGCTTCGATTTCGTAGTTGACAACTTTTTCGTAATAATGCATCCAACTGGAATATCTTTTGTCTGGTACAGTAGGTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35215</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>235307</contig_pos>
        <strand></strand>
        <context>AACTGGAATA[T/C]CTTTTGTCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCGATTTCGTAGTTGACAACTTTTTCGTAATAATGCATCCAACTGGAATA</left_flank>
        <right_flank>CTTTTGTCTGGTACAGTAGGTCAGCTACCCATTTTTGGAAAGCGGACCAG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACCTATCAGATTTATGTCACTGGCTGGTAATTAGCACATCATGTCAGAAACCATTTTTCTTTGAGTAAACCGACCTAATTGCTCTCTTTAATTGATTTTTTTTCATTCTCTTACCCTGTCTTTTCCTGTCATATTGGTCCGACAGCGTGAGCCGCTCATCGTCCGTTTTTAACAATTTCAAACTGAATACGTCCGAATAGTGGTAGATACATATTTAATTGTGTTATTTATCACTTTTATTAGCAAAATTATTATATACAGGACAGAACAAACTTTTAAATAAATTTACCAACTTCCCGTTTTACTGAAATTGCGTTTCGTCCGTTTTTGAGCCGCCGATCATCCGGTTTTCCTAACTTTTGACCAAGTTCTGCTTTTTTAAACTACATTAAATTTTATTGTATCAGGCTAAAAAATTTAAACCCCACTGAACAAAAATATAGAGCTTCGATTTCGTAGTTGACAACTTTTTCGTAATAATGCATCCAACTGGAATATCTTTTGTCTGGTACAGTAGGTCAGCTACCCATTTTTGGAAAGCGGACCAGCGACATGAGATGCATTGCTTGAAAGCAACCAAATGCCAAAACTTCCTAAAAATGGTACTGTAGGTTAGATACCGATTCTTAGTATGCAGAAAATTTTTGTTCTCTATGATACCTGCTGGGCAGCTGCCCTCACCCATTTATGACTGACAAAAAAGACCAATTAGCCCCTCCTACCTTGCCACGTCACAACTACCCCTGCCTTCTTCTTTTTCCTATGTCTTATCGTTGCTTCGTTCGCTATTAAACATCCTATCCATGGTTCTCTGAAAATGCGATCTTTCCAACCTTTTCCTCCTGTCTCATTGTCCAATTCCTTATTTCATGCTTCCCCTTCGTTACTCGTTCCATCTACAACCCTCAACATTAATCAATAACCATTTATTTCCAGAGACGACGGGAAGACGACGGCATCAATCTACAAACAACCATCCGCTATCATCGTCGTCATCC</canonical>
            <polymorphic>GTACCTATCAGATTTATGTCACTGGCTGGTAATTAGCACATCATGTCAGAAACCATTTTTCTTTGAGTAAACCGACCTAATTGCTCTCTTTAATTGATTTTTTTTCATTCTCTTACCCTGTCTTTTCCTGTCATATTGGTCCGACAGCGTGAGCCGCTCATCGTCCGTTTTTAACAATTTCAAACTGAATACGTCCGAATAGTGGTAGATACATATTTAATTGTGTTATTTATCACTTTTATTAGCAAAATTATTATATACAGGACAGAACAAACTTTTAAATAAATTTACCAACTTCCCGTTTTACTGAAATTGCGTTTCGTCCGTTTTTGAGCCGCCGATCATCCGGTTTTCCTAACTTTTGACCAAGTTCTGCTTTTTTAAACTACATTAAATTTTATTGTATCAGGCTAAAAAATTTAAACCCCACTGAACAAAAATATAGAGCTTCGATTTCGTAGTTGACAACTTTTTCGTAATAATGCATCCAACTGGAATAYCTTTTGTCTGGTACAGTAGGTCAGCTACCCATTTTTGGAAAGCGGACCAGCGACATGAGATGCATTGCTTGAAAGCAACCAAATGCCAAAACTTCCTAAAAATGGTACTGTAGGTTAGATACCGATTCTTAGTATGCAGAAAATTTTTGTTCTCTATGATACCTGCTGGGCAGCTGCCCTCACCCATTTATGACTGACAAAAAAGACCAATTAGCCCCTCCTACCTTGCCACGTCACAACTACCCCTGCCTTCTTCTTTTTCCTATGTCTTATCGTTGCTTCGTTCGCTATTAAACATCCTATCCATGGTTCTCTGAAAATGCGATCTTTCCAACCTTTTCCTCCTGTCTCATTGTCCAATTCCTTATTTCATGCTTCCCCTTCGTTACTCGTTCCATCTACAACCCTCAACATTAATCAATAACCATTTATTTCCAGAGACGACGGGAAGACGACGGCATCAATCTACAAACAACCATCCGCTATCATCGTCGTCATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCCGTTTTACTGAAATTG</pcr_primer_p1>
		<pcr_primer_p2>TTAGGAAGTTTTGGCATTTG</pcr_primer_p2>
		<pcr_amplicon_size>304</pcr_amplicon_size>
		<canonical_amplicon>TTCCCGTTTTACTGAAATTGCGTTTCGTCCGTTTTTGAGCCGCCGATCATCCGGTTTTCCTAACTTTTGACCAAGTTCTGCTTTTTTAAACTACATTAAATTTTATTGTATCAGGCTAAAAAATTTAAACCCCACTGAACAAAAATATAGAGCTTCGATTTCGTAGTTGACAACTTTTTCGTAATAATGCATCCAACTGGAATATCTTTTGTCTGGTACAGTAGGTCAGCTACCCATTTTTGGAAAGCGGACCAGCGACATGAGATGCATTGCTTGAAAGCAACCAAATGCCAAAACTTCCTAA</canonical_amplicon>
		<polymorphic_amplicon>TTCCCGTTTTACTGAAATTGCGTTTCGTCCGTTTTTGAGCCGCCGATCATCCGGTTTTCCTAACTTTTGACCAAGTTCTGCTTTTTTAAACTACATTAAATTTTATTGTATCAGGCTAAAAAATTTAAACCCCACTGAACAAAAATATAGAGCTTCGATTTCGTAGTTGACAACTTTTTCGTAATAATGCATCCAACTGGAATAYCTTTTGTCTGGTACAGTAGGTCAGCTACCCATTTTTGGAAAGCGGACCAGCGACATGAGATGCATTGCTTGAAAGCAACCAAATGCCAAAACTTCCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35216</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>236654</contig_pos>
        <strand></strand>
        <context>gaagctagat[G/C]atctagcttc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CTGTGAGGGGGAGGGAGCGAGGGCTAGTAAGAGACGCAGAGAAGCTAGAT</left_flank>
        <right_flank>ATCTAGCTTCTCAGTGTCTCCGATTAGAAAGAGCAGGTAGCTGTCTAGAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAGCCTAGGGACCCTTCTCATTTAAAATTGACATACAAACCACTTGGATCCTTCTAAAAGGTATACATAATCCATTCTCCGCGTGCTCCGCAGTCATTAAGCTCCCAGCTCTCTCTTGGTACCCTTTCATCCGGAATACACCAAACCCCCACATGTACATTTGACTGACTAAACGACACCAATTAGGAGCCGAAGCGGACGCAAATCGCTTTCTTTTGTTTCCCACTTTAAGGAACTACAAATGACCATTTTGACAGATTTTGTTCGGAGAAGCTCATGCTTGCACTTTGAGCCAATTTATCTCAGTTCCTATAACAGATATCCTGAAGTGTCAATTAACAAAATGTTTATTATAATATCAGAAACATTTTGTCAGTTGACTACTTTTTGATATCTTTCACAGGAACCGAGGTAAATTAGCTGAAAGTAAAAGTATAGGTTGACCTTCTGTGAGGGGGAGGGAGCGAGGGCTAGTAAGAGACGCAGAGAAGCTAGATGATCTAGCTTCTCAGTGTCTCCGATTAGAAAGAGCAGGTAGCTGTCTAGAAATATTTGACTCATAATCGACATATGTATCCGTAAATTTTATTGCACCTCCGCCGTTTTTTGAACCACGCGCCGTATGTTCCGATCTCTCATGAGCTGCTTCTTTTTGTCTTCTTTTGCTTTCTTCATGATTATAAAACACTCCGGAGCTTTCTCTTTTCTTCCACCCCCATCTCCATGAGATCCAAATGTTGTCTACCAAGTATTTCACTAATTGAGTCTCTAATTGCTTGGACCAACCGTAATCACCCTTATCTGCTAATCTGCTTTCTATAACTCCAAATTTGCAGGCAACACACCATCGGTGACAATCCCGAGTCAGTGTCAAGTGATGACACCCCGAATATCATCGCCATCATCTGTGATGGCACCGTCGGTTACAGTAACCTCGGGAACCGTACAACAAGGGAAGACGTTCGCCAGAATTCAAGGAAGCTCGCCGAGTAATACAA</canonical>
            <polymorphic>AAAAGCCTAGGGACCCTTCTCATTTAAAATTGACATACAAACCACTTGGATCCTTCTAAAAGGTATACATAATCCATTCTCCGCGTGCTCCGCAGTCATTAAGCTCCCAGCTCTCTCTTGGTACCCTTTCATCCGGAATACACCAAACCCCCACATGTACATTTGACTGACTAAACGACACCAATTAGGAGCCGAAGCGGACGCAAATCGCTTTCTTTTGTTTCCCACTTTAAGGAACTACAAATGACCATTTTGACAGATTTTGTTCGGAGAAGCTCATGCTTGCACTTTGAGCCAATTTATCTCAGTTCCTATAACAGATATCCTGAAGTGTCAATTAACAAAATGTTTATTATAATATCAGAAACATTTTGTCAGTTGACTACTTTTTGATATCTTTCACAGGAACCGAGGTAAATTAGCTGAAAGTAAAAGTATAGGTTGACCTTCTGTGAGGGGGAGGGAGCGAGGGCTAGTAAGAGACGCAGAGAAGCTAGATSATCTAGCTTCTCAGTGTCTCCGATTAGAAAGAGCAGGTAGCTGTCTAGAAATATTTGACTCATAATCGACATATGTATCCGTAAATTTTATTGCACCTCCGCCGTTTTTTGAACCACGCGCCGTATGTTCCGATCTCTCATGAGCTGCTTCTTTTTGTCTTCTTTTGCTTTCTTCATGATTATAAAACACTCCGGAGCTTTCTCTTTTCTTCCACCCCCATCTCCATGAGATCCAAATGTTGTCTACCAAGTATTTCACTAATTGAGTCTCTAATTGCTTGGACCAACCGTAATCACCCTTATCTGCTAATCTGCTTTCTATAACTCCAAATTTGCAGGCAACACACCATCGGTGACAATCCCGAGTCAGTGTCAAGTGATGACACCCCGAATATCATCGCCATCATCTGTGATGGCACCGTCGGTTACAGTAACCTCGGGAACCGTACAACAAGGGAAGACGTTCGCCAGAATTCAAGGAAGCTCGCCGAGTAATACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>451 271 132 98 48</canonical_bands>
                <polymorphic_bands>583 271 98 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGATTTTGTTCGGAGAAG</pcr_primer_p1>
		<pcr_primer_p2>AGTCAAATATTTCTAGACAGCTACC</pcr_primer_p2>
		<pcr_amplicon_size>305</pcr_amplicon_size>
		<canonical_amplicon>ACAGATTTTGTTCGGAGAAGCTCATGCTTGCACTTTGAGCCAATTTATCTCAGTTCCTATAACAGATATCCTGAAGTGTCAATTAACAAAATGTTTATTATAATATCAGAAACATTTTGTCAGTTGACTACTTTTTGATATCTTTCACAGGAACCGAGGTAAATTAGCTGAAAGTAAAAGTATAGGTTGACCTTCTGTGAGGGGGAGGGAGCGAGGGCTAGTAAGAGACGCAGAGAAGCTAGATGATCTAGCTTCTCAGTGTCTCCGATTAGAAAGAGCAGGTAGCTGTCTAGAAATATTTGACT</canonical_amplicon>
		<polymorphic_amplicon>ACAGATTTTGTTCGGAGAAGCTCATGCTTGCACTTTGAGCCAATTTATCTCAGTTCCTATAACAGATATCCTGAAGTGTCAATTAACAAAATGTTTATTATAATATCAGAAACATTTTGTCAGTTGACTACTTTTTGATATCTTTCACAGGAACCGAGGTAAATTAGCTGAAAGTAAAAGTATAGGTTGACCTTCTGTGAGGGGGAGGGAGCGAGGGCTAGTAAGAGACGCAGAGAAGCTAGATSATCTAGCTTCTCAGTGTCTCCGATTAGAAAGAGCAGGTAGCTGTCTAGAAATATTTGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35217</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>239753</contig_pos>
        <strand>+</strand>
        <context>aacttGAGTC[A/G]TTTGACTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCCCAGTACAACGCAATTCTTAAATTTTATGCTAGCACAAACTTGAGTC</left_flank>
        <right_flank>TTTGACTTCTACATCCATTGGGCCATGAAATCATTGAAAGCCAAATTGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTCAATCCATGACTTCCCCATCTTTGTGGATAATGGATTTAAAACTTTTTTCTTTAAAATTTTAATTTTGATGATGTTGATGACACTACGGCTTTCTTCTTTTCCCACCACAGTTTTTTCTTATCCTTTAATTTTTTGCAGCTCTTTTCTCCCACATTTTTTTCTCATATGAGCTTTCCAGTGTTGTTTTTTTTTTGAAAATTGTGTAGATTCCTTTCTTCTTCTATTCAATTTCCCTTTTCAACAACATAGCCATGTTTGAGTTCAGAAAGTTATTTTTTGCAAATAATCCAAAAAAAAATTAAGTGTAAAAATAAATAAATCGTTCCCCAGATAAATGAAATGTTGTTTTTGAAAGCGAAAATACTATGAAACAAAGTTGATCAAATAATTTGAAACTTGACCAGTTTACCGACAAAATATTTGAGCTTTTGCACTGCGAGTTTGAGCCCAGTACAACGCAATTCTTAAATTTTATGCTAGCACAAACTTGAGTCGTTTGACTTCTACATCCATTGGGCCATGAAATCATTGAAAGCCAAATTGTAAGATCACAAGCTACTGATTCTTCCAGATTCGATTATTTCAAAATTTTAGAGTTCTTGCGTTTGGAGCTCGTTGATCCCATAACTTTAAAATTCTGATTTGTTAAATCTATCTAAATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATTGACTGTTACCGCTGAAAAAGGCGCAAGATAGCAGTAAAAATTTGACAGTTATAAACTTTGTAGTATAAAATCACAAGCATTTAATTGGTGGAAAGTTTTTTTTGATATTTCTTTCCGGAACAAAGACACCGTATTTGCTCTAGAAGCCCGCTGAAAAAGTCAACTTTGAACTTAATTATCTCGATTCCTGTGAAAAATATAAAAAAGTATCCAATTAGCTAAATATTGCTGATATCATGATAAAA</canonical>
            <polymorphic>TCCTCAATCCATGACTTCCCCATCTTTGTGGATAATGGATTTAAAACTTTTTTCTTTAAAATTTTAATTTTGATGATGTTGATGACACTACGGCTTTCTTCTTTTCCCACCACAGTTTTTTCTTATCCTTTAATTTTTTGCAGCTCTTTTCTCCCACATTTTTTTCTCATATGAGCTTTCCAGTGTTGTTTTTTTTTTGAAAATTGTGTAGATTCCTTTCTTCTTCTATTCAATTTCCCTTTTCAACAACATAGCCATGTTTGAGTTCAGAAAGTTATTTTTTGCAAATAATCCAAAAAAAAATTAAGTGTAAAAATAAATAAATCGTTCCCCAGATAAATGAAATGTTGTTTTTGAAAGCGAAAATACTATGAAACAAAGTTGATCAAATAATTTGAAACTTGACCAGTTTACCGACAAAATATTTGAGCTTTTGCACTGCGAGTTTGAGCCCAGTACAACGCAATTCTTAAATTTTATGCTAGCACAAACTTGAGTCRTTTGACTTCTACATCCATTGGGCCATGAAATCATTGAAAGCCAAATTGTAAGATCACAAGCTACTGATTCTTCCAGATTCGATTATTTCAAAATTTTAGAGTTCTTGCGTTTGGAGCTCGTTGATCCCATAACTTTAAAATTCTGATTTGTTAAATCTATCTAAATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATTGACTGTTACCGCTGAAAAAGGCGCAAGATAGCAGTAAAAATTTGACAGTTATAAACTTTGTAGTATAAAATCACAAGCATTTAATTGGTGGAAAGTTTTTTTTGATATTTCTTTCCGGAACAAAGACACCGTATTTGCTCTAGAAGCCCGCTGAAAAAGTCAACTTTGAACTTAATTATCTCGATTCCTGTGAAAAATATAAAAAAGTATCCAATTAGCTAAATATTGCTGATATCATGATAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGAAATGTTGTTTTTGAAAG</pcr_primer_p1>
		<pcr_primer_p2>ATAATCGAATCTGGAAGAATCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATGAAATGTTGTTTTTGAAAGCGAAAATACTATGAAACAAAGTTGATCAAATAATTTGAAACTTGACCAGTTTACCGACAAAATATTTGAGCTTTTGCACTGCGAGTTTGAGCCCAGTACAACGCAATTCTTAAATTTTATGCTAGCACAAACTTGAGTCGTTTGACTTCTACATCCATTGGGCCATGAAATCATTGAAAGCCAAATTGTAAGATCACAAGCTACTGATTCTTCCAGATTCGATTAT</canonical_amplicon>
		<polymorphic_amplicon>AAATGAAATGTTGTTTTTGAAAGCGAAAATACTATGAAACAAAGTTGATCAAATAATTTGAAACTTGACCAGTTTACCGACAAAATATTTGAGCTTTTGCACTGCGAGTTTGAGCCCAGTACAACGCAATTCTTAAATTTTATGCTAGCACAAACTTGAGTCRTTTGACTTCTACATCCATTGGGCCATGAAATCATTGAAAGCCAAATTGTAAGATCACAAGCTACTGATTCTTCCAGATTCGATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35218</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>239896</contig_pos>
        <strand>+</strand>
        <context>CTTTWAAATT[G/T]TGATTTGTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTTAGAGTTCTTGCGTTTGGAGCTCGTTGATCCCATAACTTTAAAATT</left_flank>
        <right_flank>TGATTTGTTAAATCTATCTAAATGAATTGTATGGATATTTTAATCTTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTTTTCTCCCACATTTTTTTCTCATATGAGCTTTCCAGTGTTGTTTTTTTTTTGAAAATTGTGTAGATTCCTTTCTTCTTCTATTCAATTTCCCTTTTCAACAACATAGCCATGTTTGAGTTCAGAAAGTTATTTTTTGCAAATAATCCAAAAAAAAATTAAGTGTAAAAATAAATAAATCGTTCCCCAGATAAATGAAATGTTGTTTTTGAAAGCGAAAATACTATGAAACAAAGTTGATCAAATAATTTGAAACTTGACCAGTTTACCGACAAAATATTTGAGCTTTTGCACTGCGAGTTTGAGCCCAGTACAACGCAATTCTTAAATTTTATGCTAGCACAAACTTGAGTCGTTTGACTTCTACATCCATTGGGCCATGAAATCATTGAAAGCCAAATTGTAAGATCACAAGCTACTGATTCTTCCAGATTCGATTATTTCAAAATTTTAGAGTTCTTGCGTTTGGAGCTCGTTGATCCCATAACTTTAAAATTCTGATTTGTTAAATCTATCTAAATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATTGACTGTTACCGCTGAAAAAGGCGCAAGATAGCAGTAAAAATTTGACAGTTATAAACTTTGTAGTATAAAATCACAAGCATTTAATTGGTGGAAAGTTTTTTTTGATATTTCTTTCCGGAACAAAGACACCGTATTTGCTCTAGAAGCCCGCTGAAAAAGTCAACTTTGAACTTAATTATCTCGATTCCTGTGAAAAATATAAAAAAGTATCCAATTAGCTAAATATTGCTGATATCATGATAAAAATTTTATCAGTTGAGATTTTTTTATATCTTTTACAGGATCCGAGAAAAACTGACTTTAAGTTTCTTCATTTTTGTTCACATTTGGCTCAAGTGAATCTTAGCATTCTTTTCGAAAGCCGGGCCGGCCCTGGCAGAGTCAAAAT</canonical>
            <polymorphic>CTCTTTTCTCCCACATTTTTTTCTCATATGAGCTTTCCAGTGTTGTTTTTTTTTTGAAAATTGTGTAGATTCCTTTCTTCTTCTATTCAATTTCCCTTTTCAACAACATAGCCATGTTTGAGTTCAGAAAGTTATTTTTTGCAAATAATCCAAAAAAAAATTAAGTGTAAAAATAAATAAATCGTTCCCCAGATAAATGAAATGTTGTTTTTGAAAGCGAAAATACTATGAAACAAAGTTGATCAAATAATTTGAAACTTGACCAGTTTACCGACAAAATATTTGAGCTTTTGCACTGCGAGTTTGAGCCCAGTACAACGCAATTCTTAAATTTTATGCTAGCACAAACTTGAGTCGTTTGACTTCTACATCCATTGGGCCATGAAATCATTGAAAGCCAAATTGTAAGATCACAAGCTACTGATTCTTCCAGATTCGATTATTTCAAAATTTTAGAGTTCTTGCGTTTGGAGCTCGTTGATCCCATAACTTTAAAATTKTGATTTGTTAAATCTATCTAAATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATTGACTGTTACCGCTGAAAAAGGCGCAAGATAGCAGTAAAAATTTGACAGTTATAAACTTTGTAGTATAAAATCACAAGCATTTAATTGGTGGAAAGTTTTTTTTGATATTTCTTTCCGGAACAAAGACACCGTATTTGCTCTAGAAGCCCGCTGAAAAAGTCAACTTTGAACTTAATTATCTCGATTCCTGTGAAAAATATAAAAAAGTATCCAATTAGCTAAATATTGCTGATATCATGATAAAAATTTTATCAGTTGAGATTTTTTTATATCTTTTACAGGATCCGAGAAAAACTGACTTTAAGTTTCTTCATTTTTGTTCACATTTGGCTCAAGTGAATCTTAGCATTCTTTTCGAAAGCCGGGCCGGCCCTGGCAGAGTCAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>329 206 155 144 119 47</canonical_bands>
                <polymorphic_bands>329 206 202 144 119</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>375 313 126 102 84</canonical_bands>
                <polymorphic_bands>459 313 126 102</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTTAGAGTTCTTGCGTTTG</pcr_primer_p1>
		<pcr_primer_p2>CCAATTAAATGCTTGTGATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AATTTTAGAGTTCTTGCGTTTGGAGCTCGTTGATCCCATAACTTTAAAATTCTGATTTGTTAAATCTATCTAAATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATTGACTGTTACCGCTGAAAAAGGCGCAAGATAGCAGTAAAAATTTGACAGTTATAAACTTTGTAGTATAAAATCACAAGCATTTAATTGG</canonical_amplicon>
		<polymorphic_amplicon>AATTTTAGAGTTCTTGCGTTTGGAGCTCGTTGATCCCATAACTTTAAAATTKTGATTTGTTAAATCTATCTAAATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATTGACTGTTACCGCTGAAAAAGGCGCAAGATAGCAGTAAAAATTTGACAGTTATAAACTTTGTAGTATAAAATCACAAGCATTTAATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35219</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>240142</contig_pos>
        <strand>+</strand>
        <context>AGACACCGTA[A/G]WTGCTCTAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGGTGGAAAGTTTTTTTTGATATTTCTTTCCGGAACAAAGACACCGTA</left_flank>
        <right_flank>TTGCTCTAGAAGCCCGCTGAAAAAGTCAACTTTGAACTTAATTATCTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAATTTGAAACTTGACCAGTTTACCGACAAAATATTTGAGCTTTTGCACTGCGAGTTTGAGCCCAGTACAACGCAATTCTTAAATTTTATGCTAGCACAAACTTGAGTCGTTTGACTTCTACATCCATTGGGCCATGAAATCATTGAAAGCCAAATTGTAAGATCACAAGCTACTGATTCTTCCAGATTCGATTATTTCAAAATTTTAGAGTTCTTGCGTTTGGAGCTCGTTGATCCCATAACTTTAAAATTCTGATTTGTTAAATCTATCTAAATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATTGACTGTTACCGCTGAAAAAGGCGCAAGATAGCAGTAAAAATTTGACAGTTATAAACTTTGTAGTATAAAATCACAAGCATTTAATTGGTGGAAAGTTTTTTTTGATATTTCTTTCCGGAACAAAGACACCGTATTTGCTCTAGAAGCCCGCTGAAAAAGTCAACTTTGAACTTAATTATCTCGATTCCTGTGAAAAATATAAAAAAGTATCCAATTAGCTAAATATTGCTGATATCATGATAAAAATTTTATCAGTTGAGATTTTTTTATATCTTTTACAGGATCCGAGAAAAACTGACTTTAAGTTTCTTCATTTTTGTTCACATTTGGCTCAAGTGAATCTTAGCATTCTTTTCGAAAGCCGGGCCGGCCCTGGCAGAGTCAAAATGAAAAATTCTTCGGCCCAGTTCCGATTTCGAAATTTCAAAATTTTTTGAAGGACTCATTGAAGAAAAATTTGAAAATTTCAAAGTTTCGACACTGTTTAAAGGGCAGAATATTTTAGGAACACTTTTTTTTGAGGTTTCACTGAACAAATTTTTATCAAGAGTTTTTCAAAAACCAGCGAGAAGAATTTTTCGACTTAATGTTGCATTCTATACATACTTTCATAAGTTTTATATTTGATCTACTT</canonical>
            <polymorphic>ATAATTTGAAACTTGACCAGTTTACCGACAAAATATTTGAGCTTTTGCACTGCGAGTTTGAGCCCAGTACAACGCAATTCTTAAATTTTATGCTAGCACAAACTTGAGTCGTTTGACTTCTACATCCATTGGGCCATGAAATCATTGAAAGCCAAATTGTAAGATCACAAGCTACTGATTCTTCCAGATTCGATTATTTCAAAATTTTAGAGTTCTTGCGTTTGGAGCTCGTTGATCCCATAACTTTAAAATTCTGATTTGTTAAATCTATCTAAATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATTGACTGTTACCGCTGAAAAAGGCGCAAGATAGCAGTAAAAATTTGACAGTTATAAACTTTGTAGTATAAAATCACAAGCATTTAATTGGTGGAAAGTTTTTTTTGATATTTCTTTCCGGAACAAAGACACCGTARTTGCTCTAGAAGCCCGCTGAAAAAGTCAACTTTGAACTTAATTATCTCGATTCCTGTGAAAAATATAAAAAAGTATCCAATTAGCTAAATATTGCTGATATCATGATAAAAATTTTATCAGTTGAGATTTTTTTATATCTTTTACAGGATCCGAGAAAAACTGACTTTAAGTTTCTTCATTTTTGTTCACATTTGGCTCAAGTGAATCTTAGCATTCTTTTCGAAAGCCGGGCCGGCCCTGGCAGAGTCAAAATGAAAAATTCTTCGGCCCAGTTCCGATTTCGAAATTTCAAAATTTTTTGAAGGACTCATTGAAGAAAAATTTGAAAATTTCAAAGTTTCGACACTGTTTAAAGGGCAGAATATTTTAGGAACACTTTTTTTTGAGGTTTCACTGAACAAATTTTTATCAAGAGTTTTTCAAAAACCAGCGAGAAGAATTTTTCGACTTAATGTTGCATTCTATACATACTTTCATAAGTTTTATATTTGATCTACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCATTTAATTGGTGGAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>CAAATGTGAACAAAAATGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GCATTTAATTGGTGGAAAGTTTTTTTTGATATTTCTTTCCGGAACAAAGACACCGTATTTGCTCTAGAAGCCCGCTGAAAAAGTCAACTTTGAACTTAATTATCTCGATTCCTGTGAAAAATATAAAAAAGTATCCAATTAGCTAAATATTGCTGATATCATGATAAAAATTTTATCAGTTGAGATTTTTTTATATCTTTTACAGGATCCGAGAAAAACTGACTTTAAGTTTCTTCATTTTTGTTCACATTTG</canonical_amplicon>
		<polymorphic_amplicon>GCATTTAATTGGTGGAAAGTTTTTTTTGATATTTCTTTCCGGAACAAAGACACCGTARTTGCTCTAGAAGCCCGCTGAAAAAGTCAACTTTGAACTTAATTATCTCGATTCCTGTGAAAAATATAAAAAAGTATCCAATTAGCTAAATATTGCTGATATCATGATAAAAATTTTATCAGTTGAGATTTTTTTATATCTTTTACAGGATCCGAGAAAAACTGACTTTAAGTTTCTTCATTTTTGTTCACATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35220</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>240143</contig_pos>
        <strand>+</strand>
        <context>GACACCGTAR[A/T]TGCTCTAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGGTGGAAAGTTTTTTTTGATATTTCTTTCCGGAACAAAGACACCGTAT</left_flank>
        <right_flank>TGCTCTAGAAGCCCGCTGAAAAAGTCAACTTTGAACTTAATTATCTCGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTTGAAACTTGACCAGTTTACCGACAAAATATTTGAGCTTTTGCACTGCGAGTTTGAGCCCAGTACAACGCAATTCTTAAATTTTATGCTAGCACAAACTTGAGTCGTTTGACTTCTACATCCATTGGGCCATGAAATCATTGAAAGCCAAATTGTAAGATCACAAGCTACTGATTCTTCCAGATTCGATTATTTCAAAATTTTAGAGTTCTTGCGTTTGGAGCTCGTTGATCCCATAACTTTAAAATTCTGATTTGTTAAATCTATCTAAATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATTGACTGTTACCGCTGAAAAAGGCGCAAGATAGCAGTAAAAATTTGACAGTTATAAACTTTGTAGTATAAAATCACAAGCATTTAATTGGTGGAAAGTTTTTTTTGATATTTCTTTCCGGAACAAAGACACCGTATTTGCTCTAGAAGCCCGCTGAAAAAGTCAACTTTGAACTTAATTATCTCGATTCCTGTGAAAAATATAAAAAAGTATCCAATTAGCTAAATATTGCTGATATCATGATAAAAATTTTATCAGTTGAGATTTTTTTATATCTTTTACAGGATCCGAGAAAAACTGACTTTAAGTTTCTTCATTTTTGTTCACATTTGGCTCAAGTGAATCTTAGCATTCTTTTCGAAAGCCGGGCCGGCCCTGGCAGAGTCAAAATGAAAAATTCTTCGGCCCAGTTCCGATTTCGAAATTTCAAAATTTTTTGAAGGACTCATTGAAGAAAAATTTGAAAATTTCAAAGTTTCGACACTGTTTAAAGGGCAGAATATTTTAGGAACACTTTTTTTTGAGGTTTCACTGAACAAATTTTTATCAAGAGTTTTTCAAAAACCAGCGAGAAGAATTTTTCGACTTAATGTTGCATTCTATACATACTTTCATAAGTTTTATATTTGATCTACTTT</canonical>
            <polymorphic>TAATTTGAAACTTGACCAGTTTACCGACAAAATATTTGAGCTTTTGCACTGCGAGTTTGAGCCCAGTACAACGCAATTCTTAAATTTTATGCTAGCACAAACTTGAGTCGTTTGACTTCTACATCCATTGGGCCATGAAATCATTGAAAGCCAAATTGTAAGATCACAAGCTACTGATTCTTCCAGATTCGATTATTTCAAAATTTTAGAGTTCTTGCGTTTGGAGCTCGTTGATCCCATAACTTTAAAATTCTGATTTGTTAAATCTATCTAAATGAATTGTATGGATATTTTAATCTTTCATCTTTTTAAAGTGCTGTTTTTGGCATATCTCATCAGAATGAAGATTTCCAAAGTCCAAAATTGACTGTTACCGCTGAAAAAGGCGCAAGATAGCAGTAAAAATTTGACAGTTATAAACTTTGTAGTATAAAATCACAAGCATTTAATTGGTGGAAAGTTTTTTTTGATATTTCTTTCCGGAACAAAGACACCGTATWTGCTCTAGAAGCCCGCTGAAAAAGTCAACTTTGAACTTAATTATCTCGATTCCTGTGAAAAATATAAAAAAGTATCCAATTAGCTAAATATTGCTGATATCATGATAAAAATTTTATCAGTTGAGATTTTTTTATATCTTTTACAGGATCCGAGAAAAACTGACTTTAAGTTTCTTCATTTTTGTTCACATTTGGCTCAAGTGAATCTTAGCATTCTTTTCGAAAGCCGGGCCGGCCCTGGCAGAGTCAAAATGAAAAATTCTTCGGCCCAGTTCCGATTTCGAAATTTCAAAATTTTTTGAAGGACTCATTGAAGAAAAATTTGAAAATTTCAAAGTTTCGACACTGTTTAAAGGGCAGAATATTTTAGGAACACTTTTTTTTGAGGTTTCACTGAACAAATTTTTATCAAGAGTTTTTCAAAAACCAGCGAGAAGAATTTTTCGACTTAATGTTGCATTCTATACATACTTTCATAAGTTTTATATTTGATCTACTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCATTTAATTGGTGGAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>CAAATGTGAACAAAAATGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GCATTTAATTGGTGGAAAGTTTTTTTTGATATTTCTTTCCGGAACAAAGACACCGTATTTGCTCTAGAAGCCCGCTGAAAAAGTCAACTTTGAACTTAATTATCTCGATTCCTGTGAAAAATATAAAAAAGTATCCAATTAGCTAAATATTGCTGATATCATGATAAAAATTTTATCAGTTGAGATTTTTTTATATCTTTTACAGGATCCGAGAAAAACTGACTTTAAGTTTCTTCATTTTTGTTCACATTTG</canonical_amplicon>
		<polymorphic_amplicon>GCATTTAATTGGTGGAAAGTTTTTTTTGATATTTCTTTCCGGAACAAAGACACCGTATWTGCTCTAGAAGCCCGCTGAAAAAGTCAACTTTGAACTTAATTATCTCGATTCCTGTGAAAAATATAAAAAAGTATCCAATTAGCTAAATATTGCTGATATCATGATAAAAATTTTATCAGTTGAGATTTTTTTATATCTTTTACAGGATCCGAGAAAAACTGACTTTAAGTTTCTTCATTTTTGTTCACATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35221</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>260591</contig_pos>
        <strand>+</strand>
        <context>ATCGTGAAAA[C/T]CCTGAAGCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGGATAGTGATAGAAGACGGGCCCCAAATTGTGCCTGCTATCGTGAAAA</left_flank>
        <right_flank>CCTGAAGCGAACCAATCTACCGTATATCTATATGGCGCATAAGACAGCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTAGTTCCCGTGAAAAATTTTGAAAATCAAATTAAATTTTATTCATATATCTAATTCGTGGCTTCCTAAAACTGAAGCTGAAATGACGAATCTGGATGGTGAGCTACCTGGAATTGTTTTTTTGTATTCTCTAATTTTCAGAAAAATCAAAATTAAAAAAAATTCTAGAAAATGGGTTTTATGTACTTTTGTTTATATTGTTTGTGACAGCAGTTTGTTTTCTGTACCTGTAAGTGCCAAGTAGGATTTTCCAAAAAAACTACAGTAGTACTTTTGCAGTCTTCCCACAAAACAACCAATGATAATTGTGGTGACACCCACTTACAAACGACTCACCAGAATTCCTGATTTGTTACGGTAAAGACTTTTCAGAGATTTCTAGAGCTTTCCAACCCCCCTCAAAATTTTCCAGAATGGCCAACACCCTGGCCCATGTCAAAGATCTTCACTGGATAGTGATAGAAGACGGGCCCCAAATTGTGCCTGCTATCGTGAAAATCCTGAAGCGAACCAATCTACCGTATATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCA</canonical>
            <polymorphic>CCTAGTTCCCGTGAAAAATTTTGAAAATCAAATTAAATTTTATTCATATATCTAATTCGTGGCTTCCTAAAACTGAAGCTGAAATGACGAATCTGGATGGTGAGCTACCTGGAATTGTTTTTTTGTATTCTCTAATTTTCAGAAAAATCAAAATTAAAAAAAATTCTAGAAAATGGGTTTTATGTACTTTTGTTTATATTGTTTGTGACAGCAGTTTGTTTTCTGTACCTGTAAGTGCCAAGTAGGATTTTCCAAAAAAACTACAGTAGTACTTTTGCAGTCTTCCCACAAAACAACCAATGATAATTGTGGTGACACCCACTTACAAACGACTCACCAGAATTCCTGATTTGTTACGGTAAAGACTTTTCAGAGATTTCTAGAGCTTTCCAACCCCCCTCAAAATTTTCCAGAATGGCCAACACCCTGGCCCATGTCAAAGATCTTCACTGGATAGTGATAGAAGACGGGCCCCAAATTGTGCCTGCTATCGTGAAAAYCCTGAAGCGAACCAATCTACCGTATATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>326 179 173 93 82 73 35 30 9</canonical_bands>
                <polymorphic_bands>335 179 173 93 82 73 35 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTCAAAGATCTTCACTGGATA</pcr_primer_p1>
		<pcr_primer_p2>TCATACGAATTATCATCATCTCC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATGTCAAAGATCTTCACTGGATAGTGATAGAAGACGGGCCCCAAATTGTGCCTGCTATCGTGAAAATCCTGAAGCGAACCAATCTACCGTATATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGA</canonical_amplicon>
		<polymorphic_amplicon>ATGTCAAAGATCTTCACTGGATAGTGATAGAAGACGGGCCCCAAATTGTGCCTGCTATCGTGAAAAYCCTGAAGCGAACCAATCTACCGTATATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35222</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>260611</contig_pos>
        <strand>+</strand>
        <context>AACCAATCTA[C/T]CGTATATCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCCCCAAATTGTGCCTGCTATCGTGAAAATCCTGAAGCGAACCAATCTA</left_flank>
        <right_flank>CGTATATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAAAATCAAATTAAATTTTATTCATATATCTAATTCGTGGCTTCCTAAAACTGAAGCTGAAATGACGAATCTGGATGGTGAGCTACCTGGAATTGTTTTTTTGTATTCTCTAATTTTCAGAAAAATCAAAATTAAAAAAAATTCTAGAAAATGGGTTTTATGTACTTTTGTTTATATTGTTTGTGACAGCAGTTTGTTTTCTGTACCTGTAAGTGCCAAGTAGGATTTTCCAAAAAAACTACAGTAGTACTTTTGCAGTCTTCCCACAAAACAACCAATGATAATTGTGGTGACACCCACTTACAAACGACTCACCAGAATTCCTGATTTGTTACGGTAAAGACTTTTCAGAGATTTCTAGAGCTTTCCAACCCCCCTCAAAATTTTCCAGAATGGCCAACACCCTGGCCCATGTCAAAGATCTTCACTGGATAGTGATAGAAGACGGGCCCCAAATTGTGCCTGCTATCGTGAAAATCCTGAAGCGAACCAATCTACCGTATATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCATATTGAGAAAATTAGGCCAT</canonical>
            <polymorphic>TTGAAAATCAAATTAAATTTTATTCATATATCTAATTCGTGGCTTCCTAAAACTGAAGCTGAAATGACGAATCTGGATGGTGAGCTACCTGGAATTGTTTTTTTGTATTCTCTAATTTTCAGAAAAATCAAAATTAAAAAAAATTCTAGAAAATGGGTTTTATGTACTTTTGTTTATATTGTTTGTGACAGCAGTTTGTTTTCTGTACCTGTAAGTGCCAAGTAGGATTTTCCAAAAAAACTACAGTAGTACTTTTGCAGTCTTCCCACAAAACAACCAATGATAATTGTGGTGACACCCACTTACAAACGACTCACCAGAATTCCTGATTTGTTACGGTAAAGACTTTTCAGAGATTTCTAGAGCTTTCCAACCCCCCTCAAAATTTTCCAGAATGGCCAACACCCTGGCCCATGTCAAAGATCTTCACTGGATAGTGATAGAAGACGGGCCCCAAATTGTGCCTGCTATCGTGAAAATCCTGAAGCGAACCAATCTAYCGTATATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCATATTGAGAAAATTAGGCCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>499 245 163 93</canonical_bands>
                <polymorphic_bands>662 245 93</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTCAAAGATCTTCACTGGATA</pcr_primer_p1>
		<pcr_primer_p2>TCATACGAATTATCATCATCTCC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATGTCAAAGATCTTCACTGGATAGTGATAGAAGACGGGCCCCAAATTGTGCCTGCTATCGTGAAAATCCTGAAGCGAACCAATCTACCGTATATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGA</canonical_amplicon>
		<polymorphic_amplicon>ATGTCAAAGATCTTCACTGGATAGTGATAGAAGACGGGCCCCAAATTGTGCCTGCTATCGTGAAAATCCTGAAGCGAACCAATCTAYCGTATATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35223</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>260736</contig_pos>
        <strand>+</strand>
        <context>ATACAGAAAG[A/G]GTACTATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAG</left_flank>
        <right_flank>GTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATTACGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCAAAATTAAAAAAAATTCTAGAAAATGGGTTTTATGTACTTTTGTTTATATTGTTTGTGACAGCAGTTTGTTTTCTGTACCTGTAAGTGCCAAGTAGGATTTTCCAAAAAAACTACAGTAGTACTTTTGCAGTCTTCCCACAAAACAACCAATGATAATTGTGGTGACACCCACTTACAAACGACTCACCAGAATTCCTGATTTGTTACGGTAAAGACTTTTCAGAGATTTCTAGAGCTTTCCAACCCCCCTCAAAATTTTCCAGAATGGCCAACACCCTGGCCCATGTCAAAGATCTTCACTGGATAGTGATAGAAGACGGGCCCCAAATTGTGCCTGCTATCGTGAAAATCCTGAAGCGAACCAATCTACCGTATATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCATATTGAGAAAATTAGGCCATTGTATTCCTCACATCCCATTTTCAGGACTAATGTACGACGTCCTCGTGGAAGCACCAAAAGTCACAAATGGAACTGTCACTGGATATAACGTTATATGGCATCCTACTCGGAAATTCGCAGTTGA</canonical>
            <polymorphic>AATCAAAATTAAAAAAAATTCTAGAAAATGGGTTTTATGTACTTTTGTTTATATTGTTTGTGACAGCAGTTTGTTTTCTGTACCTGTAAGTGCCAAGTAGGATTTTCCAAAAAAACTACAGTAGTACTTTTGCAGTCTTCCCACAAAACAACCAATGATAATTGTGGTGACACCCACTTACAAACGACTCACCAGAATTCCTGATTTGTTACGGTAAAGACTTTTCAGAGATTTCTAGAGCTTTCCAACCCCCCTCAAAATTTTCCAGAATGGCCAACACCCTGGCCCATGTCAAAGATCTTCACTGGATAGTGATAGAAGACGGGCCCCAAATTGTGCCTGCTATCGTGAAAATCCTGAAGCGAACCAATCTACCGTATATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGRGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCATATTGAGAAAATTAGGCCATTGTATTCCTCACATCCCATTTTCAGGACTAATGTACGACGTCCTCGTGGAAGCACCAAAAGTCACAAATGGAACTGTCACTGGATATAACGTTATATGGCATCCTACTCGGAAATTCGCAGTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGTACT</site>
                <isoschizomers>
                    <enzyme>Acc113I</enzyme>
                    <enzyme>ScaI</enzyme>
                </isoschizomers>
                <canonical_bands>498 377 125</canonical_bands>
                <polymorphic_bands>875 125</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 377 85 38</canonical_bands>
                <polymorphic_bands>877 85 38</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTATATGGCGCATAAGACAG</pcr_primer_p1>
		<pcr_primer_p2>CTGACCTGTAATTCTCACCTACT</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>ATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAG</canonical_amplicon>
		<polymorphic_amplicon>ATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGRGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35224</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>260781</contig_pos>
        <strand>+</strand>
        <context>TATCGATTTA[A/T]WACGGATTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTA</left_flank>
        <right_flank>TACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTATATTGTTTGTGACAGCAGTTTGTTTTCTGTACCTGTAAGTGCCAAGTAGGATTTTCCAAAAAAACTACAGTAGTACTTTTGCAGTCTTCCCACAAAACAACCAATGATAATTGTGGTGACACCCACTTACAAACGACTCACCAGAATTCCTGATTTGTTACGGTAAAGACTTTTCAGAGATTTCTAGAGCTTTCCAACCCCCCTCAAAATTTTCCAGAATGGCCAACACCCTGGCCCATGTCAAAGATCTTCACTGGATAGTGATAGAAGACGGGCCCCAAATTGTGCCTGCTATCGTGAAAATCCTGAAGCGAACCAATCTACCGTATATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCATATTGAGAAAATTAGGCCATTGTATTCCTCACATCCCATTTTCAGGACTAATGTACGACGTCCTCGTGGAAGCACCAAAAGTCACAAATGGAACTGTCACTGGATATAACGTTATATGGCATCCTACTCGGAAATTCGCAGTTGACATGGCTGGATATGCAGTCAATCTGAAAGTGATCCTCAACTCGAC</canonical>
            <polymorphic>TGTTTATATTGTTTGTGACAGCAGTTTGTTTTCTGTACCTGTAAGTGCCAAGTAGGATTTTCCAAAAAAACTACAGTAGTACTTTTGCAGTCTTCCCACAAAACAACCAATGATAATTGTGGTGACACCCACTTACAAACGACTCACCAGAATTCCTGATTTGTTACGGTAAAGACTTTTCAGAGATTTCTAGAGCTTTCCAACCCCCCTCAAAATTTTCCAGAATGGCCAACACCCTGGCCCATGTCAAAGATCTTCACTGGATAGTGATAGAAGACGGGCCCCAAATTGTGCCTGCTATCGTGAAAATCCTGAAGCGAACCAATCTACCGTATATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTAWTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCATATTGAGAAAATTAGGCCATTGTATTCCTCACATCCCATTTTCAGGACTAATGTACGACGTCCTCGTGGAAGCACCAAAAGTCACAAATGGAACTGTCACTGGATATAACGTTATATGGCATCCTACTCGGAAATTCGCAGTTGACATGGCTGGATATGCAGTCAATCTGAAAGTGATCCTCAACTCGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTATATGGCGCATAAGACAG</pcr_primer_p1>
		<pcr_primer_p2>CTGACCTGTAATTCTCACCTACT</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>ATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAG</canonical_amplicon>
		<polymorphic_amplicon>ATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTAWTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35225</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>260782</contig_pos>
        <strand>+</strand>
        <context>ATCGATTTAW[A/T]ACGGATTATA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTAT</left_flank>
        <right_flank>ACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTATATTGTTTGTGACAGCAGTTTGTTTTCTGTACCTGTAAGTGCCAAGTAGGATTTTCCAAAAAAACTACAGTAGTACTTTTGCAGTCTTCCCACAAAACAACCAATGATAATTGTGGTGACACCCACTTACAAACGACTCACCAGAATTCCTGATTTGTTACGGTAAAGACTTTTCAGAGATTTCTAGAGCTTTCCAACCCCCCTCAAAATTTTCCAGAATGGCCAACACCCTGGCCCATGTCAAAGATCTTCACTGGATAGTGATAGAAGACGGGCCCCAAATTGTGCCTGCTATCGTGAAAATCCTGAAGCGAACCAATCTACCGTATATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCATATTGAGAAAATTAGGCCATTGTATTCCTCACATCCCATTTTCAGGACTAATGTACGACGTCCTCGTGGAAGCACCAAAAGTCACAAATGGAACTGTCACTGGATATAACGTTATATGGCATCCTACTCGGAAATTCGCAGTTGACATGGCTGGATATGCAGTCAATCTGAAAGTGATCCTCAACTCGACA</canonical>
            <polymorphic>GTTTATATTGTTTGTGACAGCAGTTTGTTTTCTGTACCTGTAAGTGCCAAGTAGGATTTTCCAAAAAAACTACAGTAGTACTTTTGCAGTCTTCCCACAAAACAACCAATGATAATTGTGGTGACACCCACTTACAAACGACTCACCAGAATTCCTGATTTGTTACGGTAAAGACTTTTCAGAGATTTCTAGAGCTTTCCAACCCCCCTCAAAATTTTCCAGAATGGCCAACACCCTGGCCCATGTCAAAGATCTTCACTGGATAGTGATAGAAGACGGGCCCCAAATTGTGCCTGCTATCGTGAAAATCCTGAAGCGAACCAATCTACCGTATATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATWACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCATATTGAGAAAATTAGGCCATTGTATTCCTCACATCCCATTTTCAGGACTAATGTACGACGTCCTCGTGGAAGCACCAAAAGTCACAAATGGAACTGTCACTGGATATAACGTTATATGGCATCCTACTCGGAAATTCGCAGTTGACATGGCTGGATATGCAGTCAATCTGAAAGTGATCCTCAACTCGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTATATGGCGCATAAGACAG</pcr_primer_p1>
		<pcr_primer_p2>CTGACCTGTAATTCTCACCTACT</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>ATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAG</canonical_amplicon>
		<polymorphic_amplicon>ATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATWACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35226</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>260798</contig_pos>
        <strand></strand>
        <context>TTATATCAGG[C/A]MTGTRRAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGG</left_flank>
        <right_flank>ATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGCAGTTTGTTTTCTGTACCTGTAAGTGCCAAGTAGGATTTTCCAAAAAAACTACAGTAGTACTTTTGCAGTCTTCCCACAAAACAACCAATGATAATTGTGGTGACACCCACTTACAAACGACTCACCAGAATTCCTGATTTGTTACGGTAAAGACTTTTCAGAGATTTCTAGAGCTTTCCAACCCCCCTCAAAATTTTCCAGAATGGCCAACACCCTGGCCCATGTCAAAGATCTTCACTGGATAGTGATAGAAGACGGGCCCCAAATTGTGCCTGCTATCGTGAAAATCCTGAAGCGAACCAATCTACCGTATATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCATATTGAGAAAATTAGGCCATTGTATTCCTCACATCCCATTTTCAGGACTAATGTACGACGTCCTCGTGGAAGCACCAAAAGTCACAAATGGAACTGTCACTGGATATAACGTTATATGGCATCCTACTCGGAAATTCGCAGTTGACATGGCTGGATATGCAGTCAATCTGAAAGTGATCCTCAACTCGACAGCTGTTTTTGGAACTT</canonical>
            <polymorphic>ACAGCAGTTTGTTTTCTGTACCTGTAAGTGCCAAGTAGGATTTTCCAAAAAAACTACAGTAGTACTTTTGCAGTCTTCCCACAAAACAACCAATGATAATTGTGGTGACACCCACTTACAAACGACTCACCAGAATTCCTGATTTGTTACGGTAAAGACTTTTCAGAGATTTCTAGAGCTTTCCAACCCCCCTCAAAATTTTCCAGAATGGCCAACACCCTGGCCCATGTCAAAGATCTTCACTGGATAGTGATAGAAGACGGGCCCCAAATTGTGCCTGCTATCGTGAAAATCCTGAAGCGAACCAATCTACCGTATATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGMATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCATATTGAGAAAATTAGGCCATTGTATTCCTCACATCCCATTTTCAGGACTAATGTACGACGTCCTCGTGGAAGCACCAAAAGTCACAAATGGAACTGTCACTGGATATAACGTTATATGGCATCCTACTCGGAAATTCGCAGTTGACATGGCTGGATATGCAGTCAATCTGAAAGTGATCCTCAACTCGACAGCTGTTTTTGGAACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>332 274 226 107 61</canonical_bands>
                <polymorphic_bands>381 332 226 61</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTATATGGCGCATAAGACAG</pcr_primer_p1>
		<pcr_primer_p2>AGCAAGCTGACCTGTAATTCT</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>ATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCT</canonical_amplicon>
		<polymorphic_amplicon>ATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGMATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35227</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>260799</contig_pos>
        <strand>+</strand>
        <context>TATATCAGGM[A/C]TGTRRAGAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGC</left_flank>
        <right_flank>TGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGCAGTTTGTTTTCTGTACCTGTAAGTGCCAAGTAGGATTTTCCAAAAAAACTACAGTAGTACTTTTGCAGTCTTCCCACAAAACAACCAATGATAATTGTGGTGACACCCACTTACAAACGACTCACCAGAATTCCTGATTTGTTACGGTAAAGACTTTTCAGAGATTTCTAGAGCTTTCCAACCCCCCTCAAAATTTTCCAGAATGGCCAACACCCTGGCCCATGTCAAAGATCTTCACTGGATAGTGATAGAAGACGGGCCCCAAATTGTGCCTGCTATCGTGAAAATCCTGAAGCGAACCAATCTACCGTATATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCATATTGAGAAAATTAGGCCATTGTATTCCTCACATCCCATTTTCAGGACTAATGTACGACGTCCTCGTGGAAGCACCAAAAGTCACAAATGGAACTGTCACTGGATATAACGTTATATGGCATCCTACTCGGAAATTCGCAGTTGACATGGCTGGATATGCAGTCAATCTGAAAGTGATCCTCAACTCGACAGCTGTTTTTGGAACTTC</canonical>
            <polymorphic>CAGCAGTTTGTTTTCTGTACCTGTAAGTGCCAAGTAGGATTTTCCAAAAAAACTACAGTAGTACTTTTGCAGTCTTCCCACAAAACAACCAATGATAATTGTGGTGACACCCACTTACAAACGACTCACCAGAATTCCTGATTTGTTACGGTAAAGACTTTTCAGAGATTTCTAGAGCTTTCCAACCCCCCTCAAAATTTTCCAGAATGGCCAACACCCTGGCCCATGTCAAAGATCTTCACTGGATAGTGATAGAAGACGGGCCCCAAATTGTGCCTGCTATCGTGAAAATCCTGAAGCGAACCAATCTACCGTATATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCMTGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCATATTGAGAAAATTAGGCCATTGTATTCCTCACATCCCATTTTCAGGACTAATGTACGACGTCCTCGTGGAAGCACCAAAAGTCACAAATGGAACTGTCACTGGATATAACGTTATATGGCATCCTACTCGGAAATTCGCAGTTGACATGGCTGGATATGCAGTCAATCTGAAAGTGATCCTCAACTCGACAGCTGTTTTTGGAACTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>332 274 225 107 62</canonical_bands>
                <polymorphic_bands>381 332 225 62</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTATATGGCGCATAAGACAG</pcr_primer_p1>
		<pcr_primer_p2>AGCAAGCTGACCTGTAATTCT</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>ATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCT</canonical_amplicon>
		<polymorphic_amplicon>ATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCMTGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35228</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>260803</contig_pos>
        <strand></strand>
        <context>TCAGGMMTGT[G/A]RAGAAGCTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGT</left_flank>
        <right_flank>AAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTTGTTTTCTGTACCTGTAAGTGCCAAGTAGGATTTTCCAAAAAAACTACAGTAGTACTTTTGCAGTCTTCCCACAAAACAACCAATGATAATTGTGGTGACACCCACTTACAAACGACTCACCAGAATTCCTGATTTGTTACGGTAAAGACTTTTCAGAGATTTCTAGAGCTTTCCAACCCCCCTCAAAATTTTCCAGAATGGCCAACACCCTGGCCCATGTCAAAGATCTTCACTGGATAGTGATAGAAGACGGGCCCCAAATTGTGCCTGCTATCGTGAAAATCCTGAAGCGAACCAATCTACCGTATATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCATATTGAGAAAATTAGGCCATTGTATTCCTCACATCCCATTTTCAGGACTAATGTACGACGTCCTCGTGGAAGCACCAAAAGTCACAAATGGAACTGTCACTGGATATAACGTTATATGGCATCCTACTCGGAAATTCGCAGTTGACATGGCTGGATATGCAGTCAATCTGAAAGTGATCCTCAACTCGACAGCTGTTTTTGGAACTTCTTGC</canonical>
            <polymorphic>AGTTTGTTTTCTGTACCTGTAAGTGCCAAGTAGGATTTTCCAAAAAAACTACAGTAGTACTTTTGCAGTCTTCCCACAAAACAACCAATGATAATTGTGGTGACACCCACTTACAAACGACTCACCAGAATTCCTGATTTGTTACGGTAAAGACTTTTCAGAGATTTCTAGAGCTTTCCAACCCCCCTCAAAATTTTCCAGAATGGCCAACACCCTGGCCCATGTCAAAGATCTTCACTGGATAGTGATAGAAGACGGGCCCCAAATTGTGCCTGCTATCGTGAAAATCCTGAAGCGAACCAATCTACCGTATATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTRAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCATATTGAGAAAATTAGGCCATTGTATTCCTCACATCCCATTTTCAGGACTAATGTACGACGTCCTCGTGGAAGCACCAAAAGTCACAAATGGAACTGTCACTGGATATAACGTTATATGGCATCCTACTCGGAAATTCGCAGTTGACATGGCTGGATATGCAGTCAATCTGAAAGTGATCCTCAACTCGACAGCTGTTTTTGGAACTTCTTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>140 88 77 77 72 66 51 50 37 36 33 25 25 25 24 23 18 18 17 15 15 12 11 10 10 7 6 4 3 3 2</canonical_bands>
                <polymorphic_bands>157 88 77 77 72 66 51 50 37 36 33 25 25 25 24 23 18 18 15 15 12 11 10 10 7 6 4 3 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGAGATGATGATAATTCGTA</pcr_primer_p1>
		<pcr_primer_p2>ATGGGATGTGAGGAATACAA</pcr_primer_p2>
		<pcr_amplicon_size>385</pcr_amplicon_size>
		<canonical_amplicon>TTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCATATTGAGAAAATTAGGCCATTGTATTCCTCACATCCCAT</canonical_amplicon>
		<polymorphic_amplicon>TTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTRAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCATATTGAGAAAATTAGGCCATTGTATTCCTCACATCCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35229</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>260804</contig_pos>
        <strand>+</strand>
        <context>CAGGMMTGTR[A/G]AGAAGCTGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTG</left_flank>
        <right_flank>AGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTGTTTTCTGTACCTGTAAGTGCCAAGTAGGATTTTCCAAAAAAACTACAGTAGTACTTTTGCAGTCTTCCCACAAAACAACCAATGATAATTGTGGTGACACCCACTTACAAACGACTCACCAGAATTCCTGATTTGTTACGGTAAAGACTTTTCAGAGATTTCTAGAGCTTTCCAACCCCCCTCAAAATTTTCCAGAATGGCCAACACCCTGGCCCATGTCAAAGATCTTCACTGGATAGTGATAGAAGACGGGCCCCAAATTGTGCCTGCTATCGTGAAAATCCTGAAGCGAACCAATCTACCGTATATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCATATTGAGAAAATTAGGCCATTGTATTCCTCACATCCCATTTTCAGGACTAATGTACGACGTCCTCGTGGAAGCACCAAAAGTCACAAATGGAACTGTCACTGGATATAACGTTATATGGCATCCTACTCGGAAATTCGCAGTTGACATGGCTGGATATGCAGTCAATCTGAAAGTGATCCTCAACTCGACAGCTGTTTTTGGAACTTCTTGCA</canonical>
            <polymorphic>GTTTGTTTTCTGTACCTGTAAGTGCCAAGTAGGATTTTCCAAAAAAACTACAGTAGTACTTTTGCAGTCTTCCCACAAAACAACCAATGATAATTGTGGTGACACCCACTTACAAACGACTCACCAGAATTCCTGATTTGTTACGGTAAAGACTTTTCAGAGATTTCTAGAGCTTTCCAACCCCCCTCAAAATTTTCCAGAATGGCCAACACCCTGGCCCATGTCAAAGATCTTCACTGGATAGTGATAGAAGACGGGCCCCAAATTGTGCCTGCTATCGTGAAAATCCTGAAGCGAACCAATCTACCGTATATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTGRAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCATATTGAGAAAATTAGGCCATTGTATTCCTCACATCCCATTTTCAGGACTAATGTACGACGTCCTCGTGGAAGCACCAAAAGTCACAAATGGAACTGTCACTGGATATAACGTTATATGGCATCCTACTCGGAAATTCGCAGTTGACATGGCTGGATATGCAGTCAATCTGAAAGTGATCCTCAACTCGACAGCTGTTTTTGGAACTTCTTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGAGATGATGATAATTCGTA</pcr_primer_p1>
		<pcr_primer_p2>ATGGGATGTGAGGAATACAA</pcr_primer_p2>
		<pcr_amplicon_size>385</pcr_amplicon_size>
		<canonical_amplicon>TTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCATATTGAGAAAATTAGGCCATTGTATTCCTCACATCCCAT</canonical_amplicon>
		<polymorphic_amplicon>TTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTGRAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCATATTGAGAAAATTAGGCCATTGTATTCCTCACATCCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35230</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>260822</contig_pos>
        <strand>+</strand>
        <context>GGGAATGTGG[C/G]CAGTAGGTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATCGATTTATTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGG</left_flank>
        <right_flank>CAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAGTGCCAAGTAGGATTTTCCAAAAAAACTACAGTAGTACTTTTGCAGTCTTCCCACAAAACAACCAATGATAATTGTGGTGACACCCACTTACAAACGACTCACCAGAATTCCTGATTTGTTACGGTAAAGACTTTTCAGAGATTTCTAGAGCTTTCCAACCCCCCTCAAAATTTTCCAGAATGGCCAACACCCTGGCCCATGTCAAAGATCTTCACTGGATAGTGATAGAAGACGGGCCCCAAATTGTGCCTGCTATCGTGAAAATCCTGAAGCGAACCAATCTACCGTATATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCATATTGAGAAAATTAGGCCATTGTATTCCTCACATCCCATTTTCAGGACTAATGTACGACGTCCTCGTGGAAGCACCAAAAGTCACAAATGGAACTGTCACTGGATATAACGTTATATGGCATCCTACTCGGAAATTCGCAGTTGACATGGCTGGATATGCAGTCAATCTGAAAGTGATCCTCAACTCGACAGCTGTTTTTGGAACTTCTTGCAACGTGGAAAAGGATCTCC</canonical>
            <polymorphic>TAAGTGCCAAGTAGGATTTTCCAAAAAAACTACAGTAGTACTTTTGCAGTCTTCCCACAAAACAACCAATGATAATTGTGGTGACACCCACTTACAAACGACTCACCAGAATTCCTGATTTGTTACGGTAAAGACTTTTCAGAGATTTCTAGAGCTTTCCAACCCCCCTCAAAATTTTCCAGAATGGCCAACACCCTGGCCCATGTCAAAGATCTTCACTGGATAGTGATAGAAGACGGGCCCCAAATTGTGCCTGCTATCGTGAAAATCCTGAAGCGAACCAATCTACCGTATATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGSCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCATATTGAGAAAATTAGGCCATTGTATTCCTCACATCCCATTTTCAGGACTAATGTACGACGTCCTCGTGGAAGCACCAAAAGTCACAAATGGAACTGTCACTGGATATAACGTTATATGGCATCCTACTCGGAAATTCGCAGTTGACATGGCTGGATATGCAGTCAATCTGAAAGTGATCCTCAACTCGACAGCTGTTTTTGGAACTTCTTGCAACGTGGAAAAGGATCTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGGCCA</site>
                <isoschizomers>
                    <enzyme>BalI</enzyme>
                    <enzyme>MlsI</enzyme>
                    <enzyme>MluNI</enzyme>
                    <enzyme>MscI</enzyme>
                    <enzyme>Msp20I</enzyme>
                </isoschizomers>
                <canonical_bands>501 312 187</canonical_bands>
                <polymorphic_bands>813 187</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>286 259 215 187 41 12</canonical_bands>
                <polymorphic_bands>545 215 187 41 12</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 312 185</canonical_bands>
                <polymorphic_bands>815 185</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>261 154 134 129 76 42 42 41 39 33 25 12 12</canonical_bands>
                <polymorphic_bands>261 154 134 129 76 42 42 41 39 37 33 12</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>312 286 215 187</canonical_bands>
                <polymorphic_bands>598 215 187</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGAGATGATGATAATTCGTA</pcr_primer_p1>
		<pcr_primer_p2>ATGGGATGTGAGGAATACAA</pcr_primer_p2>
		<pcr_amplicon_size>385</pcr_amplicon_size>
		<canonical_amplicon>TTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCATATTGAGAAAATTAGGCCATTGTATTCCTCACATCCCAT</canonical_amplicon>
		<polymorphic_amplicon>TTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGSCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCATATTGAGAAAATTAGGCCATTGTATTCCTCACATCCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35231</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>260864</contig_pos>
        <strand></strand>
        <context>agaccattct[A/G]acattatgac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCT</left_flank>
        <right_flank>ACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAAT</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGCAGTCTTCCCACAAAACAACCAATGATAATTGTGGTGACACCCACTTACAAACGACTCACCAGAATTCCTGATTTGTTACGGTAAAGACTTTTCAGAGATTTCTAGAGCTTTCCAACCCCCCTCAAAATTTTCCAGAATGGCCAACACCCTGGCCCATGTCAAAGATCTTCACTGGATAGTGATAGAAGACGGGCCCCAAATTGTGCCTGCTATCGTGAAAATCCTGAAGCGAACCAATCTACCGTATATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCATATTGAGAAAATTAGGCCATTGTATTCCTCACATCCCATTTTCAGGACTAATGTACGACGTCCTCGTGGAAGCACCAAAAGTCACAAATGGAACTGTCACTGGATATAACGTTATATGGCATCCTACTCGGAAATTCGCAGTTGACATGGCTGGATATGCAGTCAATCTGAAAGTGATCCTCAACTCGACAGCTGTTTTTGGAACTTCTTGCAACGTGGAAAAGGATCTCCTGAGACGTTTTTTTTGGATGATTTGGGTCTAGAAAGAGAGGA</canonical>
            <polymorphic>TTTGCAGTCTTCCCACAAAACAACCAATGATAATTGTGGTGACACCCACTTACAAACGACTCACCAGAATTCCTGATTTGTTACGGTAAAGACTTTTCAGAGATTTCTAGAGCTTTCCAACCCCCCTCAAAATTTTCCAGAATGGCCAACACCCTGGCCCATGTCAAAGATCTTCACTGGATAGTGATAGAAGACGGGCCCCAAATTGTGCCTGCTATCGTGAAAATCCTGAAGCGAACCAATCTACCGTATATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTRACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCATATTGAGAAAATTAGGCCATTGTATTCCTCACATCCCATTTTCAGGACTAATGTACGACGTCCTCGTGGAAGCACCAAAAGTCACAAATGGAACTGTCACTGGATATAACGTTATATGGCATCCTACTCGGAAATTCGCAGTTGACATGGCTGGATATGCAGTCAATCTGAAAGTGATCCTCAACTCGACAGCTGTTTTTGGAACTTCTTGCAACGTGGAAAAGGATCTCCTGAGACGTTTTTTTTGGATGATTTGGGTCTAGAAAGAGAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGAGATGATGATAATTCGTA</pcr_primer_p1>
		<pcr_primer_p2>ATGGGATGTGAGGAATACAA</pcr_primer_p2>
		<pcr_amplicon_size>385</pcr_amplicon_size>
		<canonical_amplicon>TTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCATATTGAGAAAATTAGGCCATTGTATTCCTCACATCCCAT</canonical_amplicon>
		<polymorphic_amplicon>TTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTRACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCATATTGAGAAAATTAGGCCATTGTATTCCTCACATCCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35232</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>260878</contig_pos>
        <strand></strand>
        <context>ttatgaccta[C/A]ttccccaaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTA</left_flank>
        <right_flank>TTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATAT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAAACAACCAATGATAATTGTGGTGACACCCACTTACAAACGACTCACCAGAATTCCTGATTTGTTACGGTAAAGACTTTTCAGAGATTTCTAGAGCTTTCCAACCCCCCTCAAAATTTTCCAGAATGGCCAACACCCTGGCCCATGTCAAAGATCTTCACTGGATAGTGATAGAAGACGGGCCCCAAATTGTGCCTGCTATCGTGAAAATCCTGAAGCGAACCAATCTACCGTATATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCATATTGAGAAAATTAGGCCATTGTATTCCTCACATCCCATTTTCAGGACTAATGTACGACGTCCTCGTGGAAGCACCAAAAGTCACAAATGGAACTGTCACTGGATATAACGTTATATGGCATCCTACTCGGAAATTCGCAGTTGACATGGCTGGATATGCAGTCAATCTGAAAGTGATCCTCAACTCGACAGCTGTTTTTGGAACTTCTTGCAACGTGGAAAAGGATCTCCTGAGACGTTTTTTTTGGATGATTTGGGTCTAGAAAGAGAGGATATCGAACCGTTTG</canonical>
            <polymorphic>ACAAAACAACCAATGATAATTGTGGTGACACCCACTTACAAACGACTCACCAGAATTCCTGATTTGTTACGGTAAAGACTTTTCAGAGATTTCTAGAGCTTTCCAACCCCCCTCAAAATTTTCCAGAATGGCCAACACCCTGGCCCATGTCAAAGATCTTCACTGGATAGTGATAGAAGACGGGCCCCAAATTGTGCCTGCTATCGTGAAAATCCTGAAGCGAACCAATCTACCGTATATCTATATGGCGCATAAGACAGCTGTANGATATCCGAAGAGAGGGTGGTATCAACGGACGATGGCTTTGAGGTCATTAGGTCTATTGGGAAGAAATGCTGGATCGGAGCATACAGAAAGAGTACTATTTTTGGAGATGATGATAATTCGTATGATATCGATTTATTACGGATTATATCAGGCATGTGAAGAAGCTGGGAATGTGGCCAGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTAMTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCATATTGAGAAAATTAGGCCATTGTATTCCTCACATCCCATTTTCAGGACTAATGTACGACGTCCTCGTGGAAGCACCAAAAGTCACAAATGGAACTGTCACTGGATATAACGTTATATGGCATCCTACTCGGAAATTCGCAGTTGACATGGCTGGATATGCAGTCAATCTGAAAGTGATCCTCAACTCGACAGCTGTTTTTGGAACTTCTTGCAACGTGGAAAAGGATCTCCTGAGACGTTTTTTTTGGATGATTTGGGTCTAGAAAGAGAGGATATCGAACCGTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTAGGTGAGAATTACAGGTCAG</pcr_primer_p1>
		<pcr_primer_p2>ATGGGATGTGAGGAATACAA</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>AGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTACTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCATATTGAGAAAATTAGGCCATTGTATTCCTCACATCCCAT</canonical_amplicon>
		<polymorphic_amplicon>AGTAGGTGAGAATTACAGGTCAGCTTGCTTAGACCATTCTAACATTATGACCTAMTTCCCCAAATGATTTTTCCAGNCCACCATGGTAAATGGTCTAGAAAATATACTAGGTGAATATCAAGTCCATACTAGGACGTTTACCATTGTCGCCTAGAGAACTCCACTGGCAAATGTTAGGACACTATGTTAGAAAGACCTAAAAAACACACGAGGTGAATATCAGACAATTTGTGGACCATCAACTACATATGGTCGCCGAGAAAAACCATATTGAGAAAATTAGGCCATTGTATTCCTCACATCCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35233</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>269461</contig_pos>
        <strand>+</strand>
        <context>TAAGATTTCA[A/C]AWTTTCAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTTTCTCAAATTTTAAATTTCGCAATTTTTAAAATCTTTAAGATTTCA</left_flank>
        <right_flank>ATTTTCAGAATATCTGAACCTCGATGATTACCGTAAAACCTGTAATAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGGATAGTTTCAAGAAACGAAATTTCACAGAAATAGACCCATCCCAAAAAATGAGGATATTATACGACCACATAAAACACATAGTAACAGAGAACACCGGAAAACGGTGGGGAGGATATAATTGGATTGAAAGTAGACGAATATATAAAAAACGAGAAGGGGGTCTCACAAACAAAAAAGTGAGAGGAGAAAAGTAAAACGTAGAACATGATGGATAAGTTACAGAGGAGCGATATGAAGAGGGATTTTTAGATTTTCGAGATTTCAAAATTTCGGAATTTTCAATTTTTAACAAATCCTTAGAAATATCAGAATTTCCAATATTTGGAAAAATCGCAAAAACTCGGAACTCACAGAATTTGGAATTTCGAAACATCGAAACTCTAAAAATTCTGAAATTTTGAAAAAGATTTTGAGATTCAGAACGCCGGAAATTAATATAATTGTATTTTTCTCAAATTTTAAATTTCGCAATTTTTAAAATCTTTAAGATTTCAAATTTTCAGAATATCTGAACCTCGATGATTACCGTAAAACCTGTAATAGAAGGGCTCCCAGACTGTCAAGTTAGAGCTCAATTATCTCGGTTTCTATTCAAGATATAAAAAAAGTGCCCACTAATTAAATATTGGTGCTGTCATGATAAACAATTTATCAGTTGATAACTTTTTGATATCTTCGACAGCAACCGAGATAAATTGGCTCAATTATAGGTTTTACGTTATTCAAAACTGCAAGTTTCAAATCAGGAATTTTCGATGAACTCCAAAATAATAAAAATACAAACTTGGGAATTCCCACTTCCTAGTCCAAAAATCTAATCCTATTCCTTGAGGAGACAATGGAAAATGCGGGATGGAATAGAAATAGGGTTAGAGATTATGAATGGAAAATGAAAAATGTAGGTATCCCCTTCATAATCCCCTGGCACCCTAGACTACTGGATTCTTGGATTTTACGATTTCTCAAAATGTACCTTTAATCTTGTCATCGTCAGA</canonical>
            <polymorphic>AGAGGATAGTTTCAAGAAACGAAATTTCACAGAAATAGACCCATCCCAAAAAATGAGGATATTATACGACCACATAAAACACATAGTAACAGAGAACACCGGAAAACGGTGGGGAGGATATAATTGGATTGAAAGTAGACGAATATATAAAAAACGAGAAGGGGGTCTCACAAACAAAAAAGTGAGAGGAGAAAAGTAAAACGTAGAACATGATGGATAAGTTACAGAGGAGCGATATGAAGAGGGATTTTTAGATTTTCGAGATTTCAAAATTTCGGAATTTTCAATTTTTAACAAATCCTTAGAAATATCAGAATTTCCAATATTTGGAAAAATCGCAAAAACTCGGAACTCACAGAATTTGGAATTTCGAAACATCGAAACTCTAAAAATTCTGAAATTTTGAAAAAGATTTTGAGATTCAGAACGCCGGAAATTAATATAATTGTATTTTTCTCAAATTTTAAATTTCGCAATTTTTAAAATCTTTAAGATTTCAMATTTTCAGAATATCTGAACCTCGATGATTACCGTAAAACCTGTAATAGAAGGGCTCCCAGACTGTCAAGTTAGAGCTCAATTATCTCGGTTTCTATTCAAGATATAAAAAAAGTGCCCACTAATTAAATATTGGTGCTGTCATGATAAACAATTTATCAGTTGATAACTTTTTGATATCTTCGACAGCAACCGAGATAAATTGGCTCAATTATAGGTTTTACGTTATTCAAAACTGCAAGTTTCAAATCAGGAATTTTCGATGAACTCCAAAATAATAAAAATACAAACTTGGGAATTCCCACTTCCTAGTCCAAAAATCTAATCCTATTCCTTGAGGAGACAATGGAAAATGCGGGATGGAATAGAAATAGGGTTAGAGATTATGAATGGAAAATGAAAAATGTAGGTATCCCCTTCATAATCCCCTGGCACCCTAGACTACTGGATTCTTGGATTTTACGATTTCTCAAAATGTACCTTTAATCTTGTCATCGTCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>253 248 206 61 44 42 36 33 25 22 8 8 7 7</canonical_bands>
                <polymorphic_bands>286 248 206 61 44 42 36 25 22 8 8 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>206 149 99 79 48 45 44 43 42 36 29 29 25 25 22 16 9 9 8 8 8 7 7 7</canonical_bands>
                <polymorphic_bands>206 149 104 99 48 45 44 43 42 36 29 29 25 22 16 9 9 8 8 8 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAAAAAGATTTTGAGATTCAG</pcr_primer_p1>
		<pcr_primer_p2>CAGTTTTGAATAACGTAAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>334</pcr_amplicon_size>
		<canonical_amplicon>TTGAAAAAGATTTTGAGATTCAGAACGCCGGAAATTAATATAATTGTATTTTTCTCAAATTTTAAATTTCGCAATTTTTAAAATCTTTAAGATTTCAAATTTTCAGAATATCTGAACCTCGATGATTACCGTAAAACCTGTAATAGAAGGGCTCCCAGACTGTCAAGTTAGAGCTCAATTATCTCGGTTTCTATTCAAGATATAAAAAAAGTGCCCACTAATTAAATATTGGTGCTGTCATGATAAACAATTTATCAGTTGATAACTTTTTGATATCTTCGACAGCAACCGAGATAAATTGGCTCAATTATAGGTTTTACGTTATTCAAAACTG</canonical_amplicon>
		<polymorphic_amplicon>TTGAAAAAGATTTTGAGATTCAGAACGCCGGAAATTAATATAATTGTATTTTTCTCAAATTTTAAATTTCGCAATTTTTAAAATCTTTAAGATTTCAMATTTTCAGAATATCTGAACCTCGATGATTACCGTAAAACCTGTAATAGAAGGGCTCCCAGACTGTCAAGTTAGAGCTCAATTATCTCGGTTTCTATTCAAGATATAAAAAAAGTGCCCACTAATTAAATATTGGTGCTGTCATGATAAACAATTTATCAGTTGATAACTTTTTGATATCTTCGACAGCAACCGAGATAAATTGGCTCAATTATAGGTTTTACGTTATTCAAAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35234</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>269463</contig_pos>
        <strand>+</strand>
        <context>AGATTTCAMA[A/T]TTTCAGAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTCTCAAATTTTAAATTTCGCAATTTTTAAAATCTTTAAGATTTCAAA</left_flank>
        <right_flank>TTTCAGAATATCTGAACCTCGATGATTACCGTAAAACCTGTAATAGAAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGATAGTTTCAAGAAACGAAATTTCACAGAAATAGACCCATCCCAAAAAATGAGGATATTATACGACCACATAAAACACATAGTAACAGAGAACACCGGAAAACGGTGGGGAGGATATAATTGGATTGAAAGTAGACGAATATATAAAAAACGAGAAGGGGGTCTCACAAACAAAAAAGTGAGAGGAGAAAAGTAAAACGTAGAACATGATGGATAAGTTACAGAGGAGCGATATGAAGAGGGATTTTTAGATTTTCGAGATTTCAAAATTTCGGAATTTTCAATTTTTAACAAATCCTTAGAAATATCAGAATTTCCAATATTTGGAAAAATCGCAAAAACTCGGAACTCACAGAATTTGGAATTTCGAAACATCGAAACTCTAAAAATTCTGAAATTTTGAAAAAGATTTTGAGATTCAGAACGCCGGAAATTAATATAATTGTATTTTTCTCAAATTTTAAATTTCGCAATTTTTAAAATCTTTAAGATTTCAAATTTTCAGAATATCTGAACCTCGATGATTACCGTAAAACCTGTAATAGAAGGGCTCCCAGACTGTCAAGTTAGAGCTCAATTATCTCGGTTTCTATTCAAGATATAAAAAAAGTGCCCACTAATTAAATATTGGTGCTGTCATGATAAACAATTTATCAGTTGATAACTTTTTGATATCTTCGACAGCAACCGAGATAAATTGGCTCAATTATAGGTTTTACGTTATTCAAAACTGCAAGTTTCAAATCAGGAATTTTCGATGAACTCCAAAATAATAAAAATACAAACTTGGGAATTCCCACTTCCTAGTCCAAAAATCTAATCCTATTCCTTGAGGAGACAATGGAAAATGCGGGATGGAATAGAAATAGGGTTAGAGATTATGAATGGAAAATGAAAAATGTAGGTATCCCCTTCATAATCCCCTGGCACCCTAGACTACTGGATTCTTGGATTTTACGATTTCTCAAAATGTACCTTTAATCTTGTCATCGTCAGAAG</canonical>
            <polymorphic>AGGATAGTTTCAAGAAACGAAATTTCACAGAAATAGACCCATCCCAAAAAATGAGGATATTATACGACCACATAAAACACATAGTAACAGAGAACACCGGAAAACGGTGGGGAGGATATAATTGGATTGAAAGTAGACGAATATATAAAAAACGAGAAGGGGGTCTCACAAACAAAAAAGTGAGAGGAGAAAAGTAAAACGTAGAACATGATGGATAAGTTACAGAGGAGCGATATGAAGAGGGATTTTTAGATTTTCGAGATTTCAAAATTTCGGAATTTTCAATTTTTAACAAATCCTTAGAAATATCAGAATTTCCAATATTTGGAAAAATCGCAAAAACTCGGAACTCACAGAATTTGGAATTTCGAAACATCGAAACTCTAAAAATTCTGAAATTTTGAAAAAGATTTTGAGATTCAGAACGCCGGAAATTAATATAATTGTATTTTTCTCAAATTTTAAATTTCGCAATTTTTAAAATCTTTAAGATTTCAAAWTTTCAGAATATCTGAACCTCGATGATTACCGTAAAACCTGTAATAGAAGGGCTCCCAGACTGTCAAGTTAGAGCTCAATTATCTCGGTTTCTATTCAAGATATAAAAAAAGTGCCCACTAATTAAATATTGGTGCTGTCATGATAAACAATTTATCAGTTGATAACTTTTTGATATCTTCGACAGCAACCGAGATAAATTGGCTCAATTATAGGTTTTACGTTATTCAAAACTGCAAGTTTCAAATCAGGAATTTTCGATGAACTCCAAAATAATAAAAATACAAACTTGGGAATTCCCACTTCCTAGTCCAAAAATCTAATCCTATTCCTTGAGGAGACAATGGAAAATGCGGGATGGAATAGAAATAGGGTTAGAGATTATGAATGGAAAATGAAAAATGTAGGTATCCCCTTCATAATCCCCTGGCACCCTAGACTACTGGATTCTTGGATTTTACGATTTCTCAAAATGTACCTTTAATCTTGTCATCGTCAGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>253 248 208 61 44 42 36 33 25 20 8 8 7 7</canonical_bands>
                <polymorphic_bands>286 248 208 61 44 42 36 25 20 8 8 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>208 149 99 79 48 45 44 43 42 36 29 29 25 25 20 16 9 9 8 8 8 7 7 7</canonical_bands>
                <polymorphic_bands>208 149 104 99 48 45 44 43 42 36 29 29 25 20 16 9 9 8 8 8 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAAAAAGATTTTGAGATTCAG</pcr_primer_p1>
		<pcr_primer_p2>CAGTTTTGAATAACGTAAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>334</pcr_amplicon_size>
		<canonical_amplicon>TTGAAAAAGATTTTGAGATTCAGAACGCCGGAAATTAATATAATTGTATTTTTCTCAAATTTTAAATTTCGCAATTTTTAAAATCTTTAAGATTTCAAATTTTCAGAATATCTGAACCTCGATGATTACCGTAAAACCTGTAATAGAAGGGCTCCCAGACTGTCAAGTTAGAGCTCAATTATCTCGGTTTCTATTCAAGATATAAAAAAAGTGCCCACTAATTAAATATTGGTGCTGTCATGATAAACAATTTATCAGTTGATAACTTTTTGATATCTTCGACAGCAACCGAGATAAATTGGCTCAATTATAGGTTTTACGTTATTCAAAACTG</canonical_amplicon>
		<polymorphic_amplicon>TTGAAAAAGATTTTGAGATTCAGAACGCCGGAAATTAATATAATTGTATTTTTCTCAAATTTTAAATTTCGCAATTTTTAAAATCTTTAAGATTTCAAAWTTTCAGAATATCTGAACCTCGATGATTACCGTAAAACCTGTAATAGAAGGGCTCCCAGACTGTCAAGTTAGAGCTCAATTATCTCGGTTTCTATTCAAGATATAAAAAAAGTGCCCACTAATTAAATATTGGTGCTGTCATGATAAACAATTTATCAGTTGATAACTTTTTGATATCTTCGACAGCAACCGAGATAAATTGGCTCAATTATAGGTTTTACGTTATTCAAAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35235</snp_id>
        <super_contig>c009701382.Contig1</super_contig>
        <contig_pos>270452</contig_pos>
        <strand>+</strand>
        <context>GTTGACTTTC[A/G]AAATACAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTTTTATACTCGCAAGAAGCAACATGAATCATGTTTTTGTTGACTTTC</left_flank>
        <right_flank>AAATACAATTTTTGAAGATGTCATTCAAAAACATAAAATAGACAGACATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGTCAGAAGATTTGGAAGACATTTTTGGAATGATCAAGAAGAAAATGAAAATCGTTAACCTATACGACGCCTACTGTTCAGCAACATTTCGAAGATAAGCGGGAAACCAAAAATAGACAGGTGAGCAAACTTCTCAATCAGTTGACTATAAGTTACAGAGTCAACTGATTTTTGATAATTGAAAAAGTCGATAATCAATTAACAAAACTAGTGATAAACATAGGTTTGGTTTTTTGTTCCAAACATTTATGAGTCATTAAAGTTTTGCGAATTTTGAGAAATTTTTTTGGTTCCAAGAGCCTCAATAGATTTCAGCCTTATAAAATTGCGAAAAATGGTTTATCATTCCAAAAAATTAATGAACCAAATTTCAAAATTTTGAAATCTTCATTGTTTCGAACCTCAACTGAATTCTGAGATCCAATGAATTCAAAAAATGAGTTCGTACATTTTTATACTCGCAAGAAGCAACATGAATCATGTTTTTGTTGACTTTCGAAATACAATTTTTGAAGATGTCATTCAAAAACATAAAATAGACAGACATTCAAAATATATTAGGAAGTAGAGAATTTTCGGATTTTCCTCATGTCTGAGAGATACCGTATTTTCTATATGTAAACTTTGAGCTCAATTATCTCGGTTCTTATAAGAGATATCAAAAAGTTTTTAACTGATAAAATATTTGTGATATTATGTTAAATAATTTATTAGTCAACAACTTTCCATATCTTTGACAAGAATTGAGATAAATGAGCTCAAAATTAGGTGGGCTTCTGTTATCGAAAATACGGTAGTTCAACTTTGAAGTCCTGAAAAAGTAACCTAGAAACGTTCAATTAAAATGAAACTTTTCAAATTTTCTAAACGGAAATAGAGCTTCATTTTGATAATTGACAAGTTTTTTGTACGAATACAAAAAAGCGAGGAAGTTGTCAATTACAAAAGTTCACATAGTTGTATGTTTCGTAAATCCTGGCATTTTCAGACAAATCATA</canonical>
            <polymorphic>ATCGTCAGAAGATTTGGAAGACATTTTTGGAATGATCAAGAAGAAAATGAAAATCGTTAACCTATACGACGCCTACTGTTCAGCAACATTTCGAAGATAAGCGGGAAACCAAAAATAGACAGGTGAGCAAACTTCTCAATCAGTTGACTATAAGTTACAGAGTCAACTGATTTTTGATAATTGAAAAAGTCGATAATCAATTAACAAAACTAGTGATAAACATAGGTTTGGTTTTTTGTTCCAAACATTTATGAGTCATTAAAGTTTTGCGAATTTTGAGAAATTTTTTTGGTTCCAAGAGCCTCAATAGATTTCAGCCTTATAAAATTGCGAAAAATGGTTTATCATTCCAAAAAATTAATGAACCAAATTTCAAAATTTTGAAATCTTCATTGTTTCGAACCTCAACTGAATTCTGAGATCCAATGAATTCAAAAAATGAGTTCGTACATTTTTATACTCGCAAGAAGCAACATGAATCATGTTTTTGTTGACTTTCRAAATACAATTTTTGAAGATGTCATTCAAAAACATAAAATAGACAGACATTCAAAATATATTAGGAAGTAGAGAATTTTCGGATTTTCCTCATGTCTGAGAGATACCGTATTTTCTATATGTAAACTTTGAGCTCAATTATCTCGGTTCTTATAAGAGATATCAAAAAGTTTTTAACTGATAAAATATTTGTGATATTATGTTAAATAATTTATTAGTCAACAACTTTCCATATCTTTGACAAGAATTGAGATAAATGAGCTCAAAATTAGGTGGGCTTCTGTTATCGAAAATACGGTAGTTCAACTTTGAAGTCCTGAAAAAGTAACCTAGAAACGTTCAATTAAAATGAAACTTTTCAAATTTTCTAAACGGAAATAGAGCTTCATTTTGATAATTGACAAGTTTTTTGTACGAATACAAAAAAGCGAGGAAGTTGTCAATTACAAAAGTTCACATAGTTGTATGTTTCGTAAATCCTGGCATTTTCAGACAAATCATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 307 100 91</canonical_bands>
                <polymorphic_bands>602 307 91</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>287 214 208 100 99 92</canonical_bands>
                <polymorphic_bands>387 214 208 99 92</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATGGTTTATCATTCCAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATCCGAAAATTCTCTACTTCCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATGGTTTATCATTCCAAAAAATTAATGAACCAAATTTCAAAATTTTGAAATCTTCATTGTTTCGAACCTCAACTGAATTCTGAGATCCAATGAATTCAAAAAATGAGTTCGTACATTTTTATACTCGCAAGAAGCAACATGAATCATGTTTTTGTTGACTTTCGAAATACAATTTTTGAAGATGTCATTCAAAAACATAAAATAGACAGACATTCAAAATATATTAGGAAGTAGAGAATTTTCGGAT</canonical_amplicon>
		<polymorphic_amplicon>AAAATGGTTTATCATTCCAAAAAATTAATGAACCAAATTTCAAAATTTTGAAATCTTCATTGTTTCGAACCTCAACTGAATTCTGAGATCCAATGAATTCAAAAAATGAGTTCGTACATTTTTATACTCGCAAGAAGCAACATGAATCATGTTTTTGTTGACTTTCRAAATACAATTTTTGAAGATGTCATTCAAAAACATAAAATAGACAGACATTCAAAATATATTAGGAAGTAGAGAATTTTCGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35236</snp_id>
        <super_contig>c009701410.Contig1</super_contig>
        <contig_pos>12613</contig_pos>
        <strand></strand>
        <context>TTGAATTCTT[G/T]TTCTAGAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGAATTTGTATTTTCGAAATAATCATCATTCGTCTCCGTTTTGAATTCTT</left_flank>
        <right_flank>TTCTAGAAGATATTCTGGTTTTTGTTCAATTTCTTCTTGTTTCACTTCGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATCATAAAATTCAGAATGCGGTTTATTCATGTGACAAACTTGGCAATTTTGTCGTCGTGATTTCCTCACTTTCCTGAAAATTGTAATCATTAATTTGATGGACCTTTTTTGGTGACTTGCATAATTGTTTTGTTTTTTTTAATAAATGAGCGCAAAACTCTCTCAAATGAAGTTCTTGCTAACTTCAATTTTCCGTCATAATCATCAATAATTGCTTGAATATGAGAATAACAAACATATGTCGGATTTATTTCGCCAAACCCTTCAACTTTGAAAATTTCAGACAGAACAGTTTTGTCCTCTTCCGATTTGATCATTTTTAAAAGTTTTCTTGACAACATCTTCTGACAAATTTCGCATTGAAAATCGCCGGCTTCTTTGGGCACCTTCTCAAAAGGAGAATCACTTTCTTTTGGCTCCGGTTTGATGTCTTCAGGAAATTCATCCGAATTTGTATTTTCGAAATAATCATCATTCGTCTCCGTTTTGAATTCTTGTTCTAGAAGATATTCTGGTTTTTGTTCAATTTCTTCTTGTTTCACTTCGACGAATTCGCCATTTCTGAACGTAAAATTGAAATCTTCTTCGATGACTCTATCTTTGATAACCGCTTCGTTCATCTGAAAATTTTTGAAAGTTCAAATGTAAAAATTGATTTTTTTTTGCTGTCGAATTGTTCCGAATTCGAGAATTTTTCTAGAAAATGACGCAAAAATGCAACTGTTCATTCGAAATAGTCAAAAAATTGAGACCGTACAAATCGGAAAGACTTTAAGTCCGAAAGAAAAAGGAAGGGGTTTATCTGAATTGAACGAGAGATTTCTCGATTGAAAGAGATTTAGAGAAAACTCTGCACTTTTTTGAACTTCGATTCGGATTTCACAGTAGATCACTTTTCCGCGCATTCCACTTTATATGAAAAAAAAACAAAAAAAGTTCCAAACGGTACGTAGATTTTGTTTTTGTTTTGTTCTCACAAAACTTCTTTGCATAATAG</canonical>
            <polymorphic>AATATCATAAAATTCAGAATGCGGTTTATTCATGTGACAAACTTGGCAATTTTGTCGTCGTGATTTCCTCACTTTCCTGAAAATTGTAATCATTAATTTGATGGACCTTTTTTGGTGACTTGCATAATTGTTTTGTTTTTTTTAATAAATGAGCGCAAAACTCTCTCAAATGAAGTTCTTGCTAACTTCAATTTTCCGTCATAATCATCAATAATTGCTTGAATATGAGAATAACAAACATATGTCGGATTTATTTCGCCAAACCCTTCAACTTTGAAAATTTCAGACAGAACAGTTTTGTCCTCTTCCGATTTGATCATTTTTAAAAGTTTTCTTGACAACATCTTCTGACAAATTTCGCATTGAAAATCGCCGGCTTCTTTGGGCACCTTCTCAAAAGGAGAATCACTTTCTTTTGGCTCCGGTTTGATGTCTTCAGGAAATTCATCCGAATTTGTATTTTCGAAATAATCATCATTCGTCTCCGTTTTGAATTCTTKTTCTAGAAGATATTCTGGTTTTTGTTCAATTTCTTCTTGTTTCACTTCGACGAATTCGCCATTTCTGAACGTAAAATTGAAATCTTCTTCGATGACTCTATCTTTGATAACCGCTTCGTTCATCTGAAAATTTTTGAAAGTTCAAATGTAAAAATTGATTTTTTTTTGCTGTCGAATTGTTCCGAATTCGAGAATTTTTCTAGAAAATGACGCAAAAATGCAACTGTTCATTCGAAATAGTCAAAAAATTGAGACCGTACAAATCGGAAAGACTTTAAGTCCGAAAGAAAAAGGAAGGGGTTTATCTGAATTGAACGAGAGATTTCTCGATTGAAAGAGATTTAGAGAAAACTCTGCACTTTTTTGAACTTCGATTCGGATTTCACAGTAGATCACTTTTCCGCGCATTCCACTTTATATGAAAAAAAAACAAAAAAAGTTCCAAACGGTACGTAGATTTTGTTTTTGTTTTGTTCTCACAAAACTTCTTTGCATAATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGACAACATCTTCTGACAAAT</pcr_primer_p1>
		<pcr_primer_p2>GATTTCAATTTTACGTTCAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTTGACAACATCTTCTGACAAATTTCGCATTGAAAATCGCCGGCTTCTTTGGGCACCTTCTCAAAAGGAGAATCACTTTCTTTTGGCTCCGGTTTGATGTCTTCAGGAAATTCATCCGAATTTGTATTTTCGAAATAATCATCATTCGTCTCCGTTTTGAATTCTTGTTCTAGAAGATATTCTGGTTTTTGTTCAATTTCTTCTTGTTTCACTTCGACGAATTCGCCATTTCTGAACGTAAAATTGAAATC</canonical_amplicon>
		<polymorphic_amplicon>CTTGACAACATCTTCTGACAAATTTCGCATTGAAAATCGCCGGCTTCTTTGGGCACCTTCTCAAAAGGAGAATCACTTTCTTTTGGCTCCGGTTTGATGTCTTCAGGAAATTCATCCGAATTTGTATTTTCGAAATAATCATCATTCGTCTCCGTTTTGAATTCTTKTTCTAGAAGATATTCTGGTTTTTGTTCAATTTCTTCTTGTTTCACTTCGACGAATTCGCCATTTCTGAACGTAAAATTGAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35237</snp_id>
        <super_contig>c009701410.Contig1</super_contig>
        <contig_pos>12711</contig_pos>
        <strand></strand>
        <context>TTCGATGACT[C/T]YATYTTTGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGACGAATTCGCCATTTCTGAACGTAAAATTGAAATCTTCTTCGATGACT</left_flank>
        <right_flank>TATCTTTGATAACCGCTTCGTTCATCTGAAAATTTTTGAAAGTTCAAATG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATGGACCTTTTTTGGTGACTTGCATAATTGTTTTGTTTTTTTTAATAAATGAGCGCAAAACTCTCTCAAATGAAGTTCTTGCTAACTTCAATTTTCCGTCATAATCATCAATAATTGCTTGAATATGAGAATAACAAACATATGTCGGATTTATTTCGCCAAACCCTTCAACTTTGAAAATTTCAGACAGAACAGTTTTGTCCTCTTCCGATTTGATCATTTTTAAAAGTTTTCTTGACAACATCTTCTGACAAATTTCGCATTGAAAATCGCCGGCTTCTTTGGGCACCTTCTCAAAAGGAGAATCACTTTCTTTTGGCTCCGGTTTGATGTCTTCAGGAAATTCATCCGAATTTGTATTTTCGAAATAATCATCATTCGTCTCCGTTTTGAATTCTTGTTCTAGAAGATATTCTGGTTTTTGTTCAATTTCTTCTTGTTTCACTTCGACGAATTCGCCATTTCTGAACGTAAAATTGAAATCTTCTTCGATGACTCTATCTTTGATAACCGCTTCGTTCATCTGAAAATTTTTGAAAGTTCAAATGTAAAAATTGATTTTTTTTTGCTGTCGAATTGTTCCGAATTCGAGAATTTTTCTAGAAAATGACGCAAAAATGCAACTGTTCATTCGAAATAGTCAAAAAATTGAGACCGTACAAATCGGAAAGACTTTAAGTCCGAAAGAAAAAGGAAGGGGTTTATCTGAATTGAACGAGAGATTTCTCGATTGAAAGAGATTTAGAGAAAACTCTGCACTTTTTTGAACTTCGATTCGGATTTCACAGTAGATCACTTTTCCGCGCATTCCACTTTATATGAAAAAAAAACAAAAAAAGTTCCAAACGGTACGTAGATTTTGTTTTTGTTTTGTTCTCACAAAACTTCTTTGCATAATAGAAAATTCTGGATTTTTTTCTTTGTTTCTCAATGAAGTTTCTTTGAGCCTAATTTGCAACCCTGGCCCTGTNCGGCAAACCGGCCATCGATGTTCTGGG</canonical>
            <polymorphic>TGATGGACCTTTTTTGGTGACTTGCATAATTGTTTTGTTTTTTTTAATAAATGAGCGCAAAACTCTCTCAAATGAAGTTCTTGCTAACTTCAATTTTCCGTCATAATCATCAATAATTGCTTGAATATGAGAATAACAAACATATGTCGGATTTATTTCGCCAAACCCTTCAACTTTGAAAATTTCAGACAGAACAGTTTTGTCCTCTTCCGATTTGATCATTTTTAAAAGTTTTCTTGACAACATCTTCTGACAAATTTCGCATTGAAAATCGCCGGCTTCTTTGGGCACCTTCTCAAAAGGAGAATCACTTTCTTTTGGCTCCGGTTTGATGTCTTCAGGAAATTCATCCGAATTTGTATTTTCGAAATAATCATCATTCGTCTCCGTTTTGAATTCTTGTTCTAGAAGATATTCTGGTTTTTGTTCAATTTCTTCTTGTTTCACTTCGACGAATTCGCCATTTCTGAACGTAAAATTGAAATCTTCTTCGATGACTYTATCTTTGATAACCGCTTCGTTCATCTGAAAATTTTTGAAAGTTCAAATGTAAAAATTGATTTTTTTTTGCTGTCGAATTGTTCCGAATTCGAGAATTTTTCTAGAAAATGACGCAAAAATGCAACTGTTCATTCGAAATAGTCAAAAAATTGAGACCGTACAAATCGGAAAGACTTTAAGTCCGAAAGAAAAAGGAAGGGGTTTATCTGAATTGAACGAGAGATTTCTCGATTGAAAGAGATTTAGAGAAAACTCTGCACTTTTTTGAACTTCGATTCGGATTTCACAGTAGATCACTTTTCCGCGCATTCCACTTTATATGAAAAAAAAACAAAAAAAGTTCCAAACGGTACGTAGATTTTGTTTTTGTTTTGTTCTCACAAAACTTCTTTGCATAATAGAAAATTCTGGATTTTTTTCTTTGTTTCTCAATGAAGTTTCTTTGAGCCTAATTTGCAACCCTGGCCCTGTNCGGCAAACCGGCCATCGATGTTCTGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>305 279 225 191</canonical_bands>
                <polymorphic_bands>470 305 225</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTCTGGTTTTTGTTCAATTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTGACTATTTCGAATGAACAGT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>TATTCTGGTTTTTGTTCAATTTCTTCTTGTTTCACTTCGACGAATTCGCCATTTCTGAACGTAAAATTGAAATCTTCTTCGATGACTCTATCTTTGATAACCGCTTCGTTCATCTGAAAATTTTTGAAAGTTCAAATGTAAAAATTGATTTTTTTTTGCTGTCGAATTGTTCCGAATTCGAGAATTTTTCTAGAAAATGACGCAAAAATGCAACTGTTCATTCGAAATAGTCAAA</canonical_amplicon>
		<polymorphic_amplicon>TATTCTGGTTTTTGTTCAATTTCTTCTTGTTTCACTTCGACGAATTCGCCATTTCTGAACGTAAAATTGAAATCTTCTTCGATGACTYTATCTTTGATAACCGCTTCGTTCATCTGAAAATTTTTGAAAGTTCAAATGTAAAAATTGATTTTTTTTTGCTGTCGAATTGTTCCGAATTCGAGAATTTTTCTAGAAAATGACGCAAAAATGCAACTGTTCATTCGAAATAGTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35238</snp_id>
        <super_contig>c009701410.Contig1</super_contig>
        <contig_pos>12712</contig_pos>
        <strand></strand>
        <context>TCGATGACTY[T/C]ATYTTTGATA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GACGAATTCGCCATTTCTGAACGTAAAATTGAAATCTTCTTCGATGACTC</left_flank>
        <right_flank>ATCTTTGATAACCGCTTCGTTCATCTGAAAATTTTTGAAAGTTCAAATGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGGACCTTTTTTGGTGACTTGCATAATTGTTTTGTTTTTTTTAATAAATGAGCGCAAAACTCTCTCAAATGAAGTTCTTGCTAACTTCAATTTTCCGTCATAATCATCAATAATTGCTTGAATATGAGAATAACAAACATATGTCGGATTTATTTCGCCAAACCCTTCAACTTTGAAAATTTCAGACAGAACAGTTTTGTCCTCTTCCGATTTGATCATTTTTAAAAGTTTTCTTGACAACATCTTCTGACAAATTTCGCATTGAAAATCGCCGGCTTCTTTGGGCACCTTCTCAAAAGGAGAATCACTTTCTTTTGGCTCCGGTTTGATGTCTTCAGGAAATTCATCCGAATTTGTATTTTCGAAATAATCATCATTCGTCTCCGTTTTGAATTCTTGTTCTAGAAGATATTCTGGTTTTTGTTCAATTTCTTCTTGTTTCACTTCGACGAATTCGCCATTTCTGAACGTAAAATTGAAATCTTCTTCGATGACTCTATCTTTGATAACCGCTTCGTTCATCTGAAAATTTTTGAAAGTTCAAATGTAAAAATTGATTTTTTTTTGCTGTCGAATTGTTCCGAATTCGAGAATTTTTCTAGAAAATGACGCAAAAATGCAACTGTTCATTCGAAATAGTCAAAAAATTGAGACCGTACAAATCGGAAAGACTTTAAGTCCGAAAGAAAAAGGAAGGGGTTTATCTGAATTGAACGAGAGATTTCTCGATTGAAAGAGATTTAGAGAAAACTCTGCACTTTTTTGAACTTCGATTCGGATTTCACAGTAGATCACTTTTCCGCGCATTCCACTTTATATGAAAAAAAAACAAAAAAAGTTCCAAACGGTACGTAGATTTTGTTTTTGTTTTGTTCTCACAAAACTTCTTTGCATAATAGAAAATTCTGGATTTTTTTCTTTGTTTCTCAATGAAGTTTCTTTGAGCCTAATTTGCAACCCTGGCCCTGTNCGGCAAACCGGCCATCGATGTTCTGGGA</canonical>
            <polymorphic>GATGGACCTTTTTTGGTGACTTGCATAATTGTTTTGTTTTTTTTAATAAATGAGCGCAAAACTCTCTCAAATGAAGTTCTTGCTAACTTCAATTTTCCGTCATAATCATCAATAATTGCTTGAATATGAGAATAACAAACATATGTCGGATTTATTTCGCCAAACCCTTCAACTTTGAAAATTTCAGACAGAACAGTTTTGTCCTCTTCCGATTTGATCATTTTTAAAAGTTTTCTTGACAACATCTTCTGACAAATTTCGCATTGAAAATCGCCGGCTTCTTTGGGCACCTTCTCAAAAGGAGAATCACTTTCTTTTGGCTCCGGTTTGATGTCTTCAGGAAATTCATCCGAATTTGTATTTTCGAAATAATCATCATTCGTCTCCGTTTTGAATTCTTGTTCTAGAAGATATTCTGGTTTTTGTTCAATTTCTTCTTGTTTCACTTCGACGAATTCGCCATTTCTGAACGTAAAATTGAAATCTTCTTCGATGACTCYATCTTTGATAACCGCTTCGTTCATCTGAAAATTTTTGAAAGTTCAAATGTAAAAATTGATTTTTTTTTGCTGTCGAATTGTTCCGAATTCGAGAATTTTTCTAGAAAATGACGCAAAAATGCAACTGTTCATTCGAAATAGTCAAAAAATTGAGACCGTACAAATCGGAAAGACTTTAAGTCCGAAAGAAAAAGGAAGGGGTTTATCTGAATTGAACGAGAGATTTCTCGATTGAAAGAGATTTAGAGAAAACTCTGCACTTTTTTGAACTTCGATTCGGATTTCACAGTAGATCACTTTTCCGCGCATTCCACTTTATATGAAAAAAAAACAAAAAAAGTTCCAAACGGTACGTAGATTTTGTTTTTGTTTTGTTCTCACAAAACTTCTTTGCATAATAGAAAATTCTGGATTTTTTTCTTTGTTTCTCAATGAAGTTTCTTTGAGCCTAATTTGCAACCCTGGCCCTGTNCGGCAAACCGGCCATCGATGTTCTGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTCTGGTTTTTGTTCAATTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTGACTATTTCGAATGAACAGT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>TATTCTGGTTTTTGTTCAATTTCTTCTTGTTTCACTTCGACGAATTCGCCATTTCTGAACGTAAAATTGAAATCTTCTTCGATGACTCTATCTTTGATAACCGCTTCGTTCATCTGAAAATTTTTGAAAGTTCAAATGTAAAAATTGATTTTTTTTTGCTGTCGAATTGTTCCGAATTCGAGAATTTTTCTAGAAAATGACGCAAAAATGCAACTGTTCATTCGAAATAGTCAAA</canonical_amplicon>
		<polymorphic_amplicon>TATTCTGGTTTTTGTTCAATTTCTTCTTGTTTCACTTCGACGAATTCGCCATTTCTGAACGTAAAATTGAAATCTTCTTCGATGACTCYATCTTTGATAACCGCTTCGTTCATCTGAAAATTTTTGAAAGTTCAAATGTAAAAATTGATTTTTTTTTGCTGTCGAATTGTTCCGAATTCGAGAATTTTTCTAGAAAATGACGCAAAAATGCAACTGTTCATTCGAAATAGTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35239</snp_id>
        <super_contig>c009701410.Contig1</super_contig>
        <contig_pos>12715</contig_pos>
        <strand></strand>
        <context>ATGACTYYAT[C/T]TTTGATAACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAATTCGCCATTTCTGAACGTAAAATTGAAATCTTCTTCGATGACTCTAT</left_flank>
        <right_flank>TTTGATAACCGCTTCGTTCATCTGAAAATTTTTGAAAGTTCAAATGTAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGACCTTTTTTGGTGACTTGCATAATTGTTTTGTTTTTTTTAATAAATGAGCGCAAAACTCTCTCAAATGAAGTTCTTGCTAACTTCAATTTTCCGTCATAATCATCAATAATTGCTTGAATATGAGAATAACAAACATATGTCGGATTTATTTCGCCAAACCCTTCAACTTTGAAAATTTCAGACAGAACAGTTTTGTCCTCTTCCGATTTGATCATTTTTAAAAGTTTTCTTGACAACATCTTCTGACAAATTTCGCATTGAAAATCGCCGGCTTCTTTGGGCACCTTCTCAAAAGGAGAATCACTTTCTTTTGGCTCCGGTTTGATGTCTTCAGGAAATTCATCCGAATTTGTATTTTCGAAATAATCATCATTCGTCTCCGTTTTGAATTCTTGTTCTAGAAGATATTCTGGTTTTTGTTCAATTTCTTCTTGTTTCACTTCGACGAATTCGCCATTTCTGAACGTAAAATTGAAATCTTCTTCGATGACTCTATCTTTGATAACCGCTTCGTTCATCTGAAAATTTTTGAAAGTTCAAATGTAAAAATTGATTTTTTTTTGCTGTCGAATTGTTCCGAATTCGAGAATTTTTCTAGAAAATGACGCAAAAATGCAACTGTTCATTCGAAATAGTCAAAAAATTGAGACCGTACAAATCGGAAAGACTTTAAGTCCGAAAGAAAAAGGAAGGGGTTTATCTGAATTGAACGAGAGATTTCTCGATTGAAAGAGATTTAGAGAAAACTCTGCACTTTTTTGAACTTCGATTCGGATTTCACAGTAGATCACTTTTCCGCGCATTCCACTTTATATGAAAAAAAAACAAAAAAAGTTCCAAACGGTACGTAGATTTTGTTTTTGTTTTGTTCTCACAAAACTTCTTTGCATAATAGAAAATTCTGGATTTTTTTCTTTGTTTCTCAATGAAGTTTCTTTGAGCCTAATTTGCAACCCTGGCCCTGTNCGGCAAACCGGCCATCGATGTTCTGGGACAC</canonical>
            <polymorphic>GGACCTTTTTTGGTGACTTGCATAATTGTTTTGTTTTTTTTAATAAATGAGCGCAAAACTCTCTCAAATGAAGTTCTTGCTAACTTCAATTTTCCGTCATAATCATCAATAATTGCTTGAATATGAGAATAACAAACATATGTCGGATTTATTTCGCCAAACCCTTCAACTTTGAAAATTTCAGACAGAACAGTTTTGTCCTCTTCCGATTTGATCATTTTTAAAAGTTTTCTTGACAACATCTTCTGACAAATTTCGCATTGAAAATCGCCGGCTTCTTTGGGCACCTTCTCAAAAGGAGAATCACTTTCTTTTGGCTCCGGTTTGATGTCTTCAGGAAATTCATCCGAATTTGTATTTTCGAAATAATCATCATTCGTCTCCGTTTTGAATTCTTGTTCTAGAAGATATTCTGGTTTTTGTTCAATTTCTTCTTGTTTCACTTCGACGAATTCGCCATTTCTGAACGTAAAATTGAAATCTTCTTCGATGACTCTATYTTTGATAACCGCTTCGTTCATCTGAAAATTTTTGAAAGTTCAAATGTAAAAATTGATTTTTTTTTGCTGTCGAATTGTTCCGAATTCGAGAATTTTTCTAGAAAATGACGCAAAAATGCAACTGTTCATTCGAAATAGTCAAAAAATTGAGACCGTACAAATCGGAAAGACTTTAAGTCCGAAAGAAAAAGGAAGGGGTTTATCTGAATTGAACGAGAGATTTCTCGATTGAAAGAGATTTAGAGAAAACTCTGCACTTTTTTGAACTTCGATTCGGATTTCACAGTAGATCACTTTTCCGCGCATTCCACTTTATATGAAAAAAAAACAAAAAAAGTTCCAAACGGTACGTAGATTTTGTTTTTGTTTTGTTCTCACAAAACTTCTTTGCATAATAGAAAATTCTGGATTTTTTTCTTTGTTTCTCAATGAAGTTTCTTTGAGCCTAATTTGCAACCCTGGCCCTGTNCGGCAAACCGGCCATCGATGTTCTGGGACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTCTGGTTTTTGTTCAATTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTGACTATTTCGAATGAACAGT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>TATTCTGGTTTTTGTTCAATTTCTTCTTGTTTCACTTCGACGAATTCGCCATTTCTGAACGTAAAATTGAAATCTTCTTCGATGACTCTATCTTTGATAACCGCTTCGTTCATCTGAAAATTTTTGAAAGTTCAAATGTAAAAATTGATTTTTTTTTGCTGTCGAATTGTTCCGAATTCGAGAATTTTTCTAGAAAATGACGCAAAAATGCAACTGTTCATTCGAAATAGTCAAA</canonical_amplicon>
		<polymorphic_amplicon>TATTCTGGTTTTTGTTCAATTTCTTCTTGTTTCACTTCGACGAATTCGCCATTTCTGAACGTAAAATTGAAATCTTCTTCGATGACTCTATYTTTGATAACCGCTTCGTTCATCTGAAAATTTTTGAAAGTTCAAATGTAAAAATTGATTTTTTTTTGCTGTCGAATTGTTCCGAATTCGAGAATTTTTCTAGAAAATGACGCAAAAATGCAACTGTTCATTCGAAATAGTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35240</snp_id>
        <super_contig>c009701410.Contig1</super_contig>
        <contig_pos>12748</contig_pos>
        <strand></strand>
        <context>TGAAAATTTT[T/A]GAAAGTTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTCTTCGATGACTCTATCTTTGATAACCGCTTCGTTCATCTGAAAATTTT</left_flank>
        <right_flank>GAAAGTTCAAATGTAAAAATTGATTTTTTTTTGCTGTCGAATTGTTCCGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTTAATAAATGAGCGCAAAACTCTCTCAAATGAAGTTCTTGCTAACTTCAATTTTCCGTCATAATCATCAATAATTGCTTGAATATGAGAATAACAAACATATGTCGGATTTATTTCGCCAAACCCTTCAACTTTGAAAATTTCAGACAGAACAGTTTTGTCCTCTTCCGATTTGATCATTTTTAAAAGTTTTCTTGACAACATCTTCTGACAAATTTCGCATTGAAAATCGCCGGCTTCTTTGGGCACCTTCTCAAAAGGAGAATCACTTTCTTTTGGCTCCGGTTTGATGTCTTCAGGAAATTCATCCGAATTTGTATTTTCGAAATAATCATCATTCGTCTCCGTTTTGAATTCTTGTTCTAGAAGATATTCTGGTTTTTGTTCAATTTCTTCTTGTTTCACTTCGACGAATTCGCCATTTCTGAACGTAAAATTGAAATCTTCTTCGATGACTCTATCTTTGATAACCGCTTCGTTCATCTGAAAATTTTTGAAAGTTCAAATGTAAAAATTGATTTTTTTTTGCTGTCGAATTGTTCCGAATTCGAGAATTTTTCTAGAAAATGACGCAAAAATGCAACTGTTCATTCGAAATAGTCAAAAAATTGAGACCGTACAAATCGGAAAGACTTTAAGTCCGAAAGAAAAAGGAAGGGGTTTATCTGAATTGAACGAGAGATTTCTCGATTGAAAGAGATTTAGAGAAAACTCTGCACTTTTTTGAACTTCGATTCGGATTTCACAGTAGATCACTTTTCCGCGCATTCCACTTTATATGAAAAAAAAACAAAAAAAGTTCCAAACGGTACGTAGATTTTGTTTTTGTTTTGTTCTCACAAAACTTCTTTGCATAATAGAAAATTCTGGATTTTTTTCTTTGTTTCTCAATGAAGTTTCTTTGAGCCTAATTTGCAACCCTGGCCCTGTNCGGCAAACCGGCCATCGATGTTCTGGGACACCCTAAAAACTCCTGAATACCACTGATTCCCAGA</canonical>
            <polymorphic>TTTTTTTTAATAAATGAGCGCAAAACTCTCTCAAATGAAGTTCTTGCTAACTTCAATTTTCCGTCATAATCATCAATAATTGCTTGAATATGAGAATAACAAACATATGTCGGATTTATTTCGCCAAACCCTTCAACTTTGAAAATTTCAGACAGAACAGTTTTGTCCTCTTCCGATTTGATCATTTTTAAAAGTTTTCTTGACAACATCTTCTGACAAATTTCGCATTGAAAATCGCCGGCTTCTTTGGGCACCTTCTCAAAAGGAGAATCACTTTCTTTTGGCTCCGGTTTGATGTCTTCAGGAAATTCATCCGAATTTGTATTTTCGAAATAATCATCATTCGTCTCCGTTTTGAATTCTTGTTCTAGAAGATATTCTGGTTTTTGTTCAATTTCTTCTTGTTTCACTTCGACGAATTCGCCATTTCTGAACGTAAAATTGAAATCTTCTTCGATGACTCTATCTTTGATAACCGCTTCGTTCATCTGAAAATTTTWGAAAGTTCAAATGTAAAAATTGATTTTTTTTTGCTGTCGAATTGTTCCGAATTCGAGAATTTTTCTAGAAAATGACGCAAAAATGCAACTGTTCATTCGAAATAGTCAAAAAATTGAGACCGTACAAATCGGAAAGACTTTAAGTCCGAAAGAAAAAGGAAGGGGTTTATCTGAATTGAACGAGAGATTTCTCGATTGAAAGAGATTTAGAGAAAACTCTGCACTTTTTTGAACTTCGATTCGGATTTCACAGTAGATCACTTTTCCGCGCATTCCACTTTATATGAAAAAAAAACAAAAAAAGTTCCAAACGGTACGTAGATTTTGTTTTTGTTTTGTTCTCACAAAACTTCTTTGCATAATAGAAAATTCTGGATTTTTTTCTTTGTTTCTCAATGAAGTTTCTTTGAGCCTAATTTGCAACCCTGGCCCTGTNCGGCAAACCGGCCATCGATGTTCTGGGACACCCTAAAAACTCCTGAATACCACTGATTCCCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTCTGGTTTTTGTTCAATTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTGACTATTTCGAATGAACAGT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>TATTCTGGTTTTTGTTCAATTTCTTCTTGTTTCACTTCGACGAATTCGCCATTTCTGAACGTAAAATTGAAATCTTCTTCGATGACTCTATCTTTGATAACCGCTTCGTTCATCTGAAAATTTTTGAAAGTTCAAATGTAAAAATTGATTTTTTTTTGCTGTCGAATTGTTCCGAATTCGAGAATTTTTCTAGAAAATGACGCAAAAATGCAACTGTTCATTCGAAATAGTCAAA</canonical_amplicon>
		<polymorphic_amplicon>TATTCTGGTTTTTGTTCAATTTCTTCTTGTTTCACTTCGACGAATTCGCCATTTCTGAACGTAAAATTGAAATCTTCTTCGATGACTCTATCTTTGATAACCGCTTCGTTCATCTGAAAATTTTWGAAAGTTCAAATGTAAAAATTGATTTTTTTTTGCTGTCGAATTGTTCCGAATTCGAGAATTTTTCTAGAAAATGACGCAAAAATGCAACTGTTCATTCGAAATAGTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35241</snp_id>
        <super_contig>c009701410.Contig1</super_contig>
        <contig_pos>12794</contig_pos>
        <strand></strand>
        <context>GTCGAATTGT[T/C]CCGAATTCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTTGAAAGTTCAAATGTAAAAATTGATTTTTTTTTGCTGTCGAATTGT</left_flank>
        <right_flank>CCGAATTCGAGAATTTTTCTAGAAAATGACGCAAAAATGCAACTGTTCAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAACTTCAATTTTCCGTCATAATCATCAATAATTGCTTGAATATGAGAATAACAAACATATGTCGGATTTATTTCGCCAAACCCTTCAACTTTGAAAATTTCAGACAGAACAGTTTTGTCCTCTTCCGATTTGATCATTTTTAAAAGTTTTCTTGACAACATCTTCTGACAAATTTCGCATTGAAAATCGCCGGCTTCTTTGGGCACCTTCTCAAAAGGAGAATCACTTTCTTTTGGCTCCGGTTTGATGTCTTCAGGAAATTCATCCGAATTTGTATTTTCGAAATAATCATCATTCGTCTCCGTTTTGAATTCTTGTTCTAGAAGATATTCTGGTTTTTGTTCAATTTCTTCTTGTTTCACTTCGACGAATTCGCCATTTCTGAACGTAAAATTGAAATCTTCTTCGATGACTCTATCTTTGATAACCGCTTCGTTCATCTGAAAATTTTTGAAAGTTCAAATGTAAAAATTGATTTTTTTTTGCTGTCGAATTGTTCCGAATTCGAGAATTTTTCTAGAAAATGACGCAAAAATGCAACTGTTCATTCGAAATAGTCAAAAAATTGAGACCGTACAAATCGGAAAGACTTTAAGTCCGAAAGAAAAAGGAAGGGGTTTATCTGAATTGAACGAGAGATTTCTCGATTGAAAGAGATTTAGAGAAAACTCTGCACTTTTTTGAACTTCGATTCGGATTTCACAGTAGATCACTTTTCCGCGCATTCCACTTTATATGAAAAAAAAACAAAAAAAGTTCCAAACGGTACGTAGATTTTGTTTTTGTTTTGTTCTCACAAAACTTCTTTGCATAATAGAAAATTCTGGATTTTTTTCTTTGTTTCTCAATGAAGTTTCTTTGAGCCTAATTTGCAACCCTGGCCCTGTNCGGCAAACCGGCCATCGATGTTCTGGGACACCCTAAAAACTCCTGAATACCACTGATTCCCAGATGCTCGAAAATTATGTCAATTGTCTCTTTGCGATGTGAATAACAAG</canonical>
            <polymorphic>CTAACTTCAATTTTCCGTCATAATCATCAATAATTGCTTGAATATGAGAATAACAAACATATGTCGGATTTATTTCGCCAAACCCTTCAACTTTGAAAATTTCAGACAGAACAGTTTTGTCCTCTTCCGATTTGATCATTTTTAAAAGTTTTCTTGACAACATCTTCTGACAAATTTCGCATTGAAAATCGCCGGCTTCTTTGGGCACCTTCTCAAAAGGAGAATCACTTTCTTTTGGCTCCGGTTTGATGTCTTCAGGAAATTCATCCGAATTTGTATTTTCGAAATAATCATCATTCGTCTCCGTTTTGAATTCTTGTTCTAGAAGATATTCTGGTTTTTGTTCAATTTCTTCTTGTTTCACTTCGACGAATTCGCCATTTCTGAACGTAAAATTGAAATCTTCTTCGATGACTCTATCTTTGATAACCGCTTCGTTCATCTGAAAATTTTTGAAAGTTCAAATGTAAAAATTGATTTTTTTTTGCTGTCGAATTGTYCCGAATTCGAGAATTTTTCTAGAAAATGACGCAAAAATGCAACTGTTCATTCGAAATAGTCAAAAAATTGAGACCGTACAAATCGGAAAGACTTTAAGTCCGAAAGAAAAAGGAAGGGGTTTATCTGAATTGAACGAGAGATTTCTCGATTGAAAGAGATTTAGAGAAAACTCTGCACTTTTTTGAACTTCGATTCGGATTTCACAGTAGATCACTTTTCCGCGCATTCCACTTTATATGAAAAAAAAACAAAAAAAGTTCCAAACGGTACGTAGATTTTGTTTTTGTTTTGTTCTCACAAAACTTCTTTGCATAATAGAAAATTCTGGATTTTTTTCTTTGTTTCTCAATGAAGTTTCTTTGAGCCTAATTTGCAACCCTGGCCCTGTNCGGCAAACCGGCCATCGATGTTCTGGGACACCCTAAAAACTCCTGAATACCACTGATTCCCAGATGCTCGAAAATTATGTCAATTGTCTCTTTGCGATGTGAATAACAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>303 116 101 83 71 66 59 58 40 38 25 24 16</canonical_bands>
                <polymorphic_bands>303 141 116 101 71 66 59 40 38 25 24 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTCTGGTTTTTGTTCAATTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTGACTATTTCGAATGAACAGT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>TATTCTGGTTTTTGTTCAATTTCTTCTTGTTTCACTTCGACGAATTCGCCATTTCTGAACGTAAAATTGAAATCTTCTTCGATGACTCTATCTTTGATAACCGCTTCGTTCATCTGAAAATTTTTGAAAGTTCAAATGTAAAAATTGATTTTTTTTTGCTGTCGAATTGTTCCGAATTCGAGAATTTTTCTAGAAAATGACGCAAAAATGCAACTGTTCATTCGAAATAGTCAAA</canonical_amplicon>
		<polymorphic_amplicon>TATTCTGGTTTTTGTTCAATTTCTTCTTGTTTCACTTCGACGAATTCGCCATTTCTGAACGTAAAATTGAAATCTTCTTCGATGACTCTATCTTTGATAACCGCTTCGTTCATCTGAAAATTTTTGAAAGTTCAAATGTAAAAATTGATTTTTTTTTGCTGTCGAATTGTYCCGAATTCGAGAATTTTTCTAGAAAATGACGCAAAAATGCAACTGTTCATTCGAAATAGTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35244</snp_id>
        <super_contig>c009701473.Contig1</super_contig>
        <contig_pos>15401</contig_pos>
        <strand></strand>
        <context>aacacttttc[A/G]taattttttg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCAGTTTTGTGATCGTTTCCATTAAAATTTCGAACTTTGAACACTTTTC</left_flank>
        <right_flank>TAATTTTTTGAAAATATCAGTTTATGTCATTTTTTGCATATTTTTTGTCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAAAGAAGACAAAGAAAAGTCGAGTGTTTCTCAAAATCGAAAACCTTCGGAACAAACGAAAGAAGACACGACGAATCTGACGACGTGCCAAGAGCTGAAACCCAAATCCAGGCCAAAATCGAGCAGAGTTCCAGTGGAAGAAAGTACAAAAAGAAAGGATGAAGGGAAGGAGAAGGAACAGCAAGTTTCTGAAAAAGGGGAAAAGAAGTTCAATATGCATTTGGCACAGCTCTTTTTCAAACGGATGATGGAGGCACAGAAAACGAAGAAGACTCCGAATAAGAATCAAGATGAGGTGGGCTTTTGGTTCAATTAACTCGGTTCCTATGAGACTTATCAAACATCAATAAATCAATAAAATATTTGGCTCTTTATGACAAGCGGGGGAAAAGGGGGGGGGGGGCCCAAGTGGAAAAATTATGCCTGAGTTGATATTTACCGATTTTTTCCAGTTTTGTGATCGTTTCCATTAAAATTTCGAACTTTGAACACTTTTCATAATTTTTTGAAAATATCAGTTTATGTCATTTTTTGCATATTTTTTGTCTATTTTTTTGTTACTAAGCCTGAAAAAATCTGAAACTAGCTGAATAACTTCAAATTACACAGCTGCAATGGAAAAATTCGTATTGTTCATGAAAAAAACCGGCCTAAACTGAAATTTTTTGAAGTGACAAATTTTTGTGGAAACAAGCGCAAAGTACGAAATTTTTATAGAAACATTTGAAAAACTTGAAAAAATTGGTAAATCTTAACTTAGTCCACATTTTTACCTATGCCCCCCCCCTTTTGATTTGGCCCCCCCCCCCTTTTCTCATGGGCCCCCTTGTCATAAAGAGCCAAATATTTGTCATAAAATCATCAACATTTTATCAGTTGACAGATTTTTGATATATCTTATAGGAAGCGGGATAATTTAATTGAGCTTAAAGTGTGCAAGTATAGTGGTGACGCAACCTGCCGACCGAGTTGTTGAGCTCAATTATCTCGTTTCCTGT</canonical>
            <polymorphic>GATAAAGAAGACAAAGAAAAGTCGAGTGTTTCTCAAAATCGAAAACCTTCGGAACAAACGAAAGAAGACACGACGAATCTGACGACGTGCCAAGAGCTGAAACCCAAATCCAGGCCAAAATCGAGCAGAGTTCCAGTGGAAGAAAGTACAAAAAGAAAGGATGAAGGGAAGGAGAAGGAACAGCAAGTTTCTGAAAAAGGGGAAAAGAAGTTCAATATGCATTTGGCACAGCTCTTTTTCAAACGGATGATGGAGGCACAGAAAACGAAGAAGACTCCGAATAAGAATCAAGATGAGGTGGGCTTTTGGTTCAATTAACTCGGTTCCTATGAGACTTATCAAACATCAATAAATCAATAAAATATTTGGCTCTTTATGACAAGCGGGGGAAAAGGGGGGGGGGGGCCCAAGTGGAAAAATTATGCCTGAGTTGATATTTACCGATTTTTTCCAGTTTTGTGATCGTTTCCATTAAAATTTCGAACTTTGAACACTTTTCRTAATTTTTTGAAAATATCAGTTTATGTCATTTTTTGCATATTTTTTGTCTATTTTTTTGTTACTAAGCCTGAAAAAATCTGAAACTAGCTGAATAACTTCAAATTACACAGCTGCAATGGAAAAATTCGTATTGTTCATGAAAAAAACCGGCCTAAACTGAAATTTTTTGAAGTGACAAATTTTTGTGGAAACAAGCGCAAAGTACGAAATTTTTATAGAAACATTTGAAAAACTTGAAAAAATTGGTAAATCTTAACTTAGTCCACATTTTTACCTATGCCCCCCCCCTTTTGATTTGGCCCCCCCCCCCTTTTCTCATGGGCCCCCTTGTCATAAAGAGCCAAATATTTGTCATAAAATCATCAACATTTTATCAGTTGACAGATTTTTGATATATCTTATAGGAAGCGGGATAATTTAATTGAGCTTAAAGTGTGCAAGTATAGTGGTGACGCAACCTGCCGACCGAGTTGTTGAGCTCAATTATCTCGTTTCCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATTTGGCTCTTTATGACAAG</pcr_primer_p1>
		<pcr_primer_p2>AATGCTCTAAACACCGTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>777</pcr_amplicon_size>
		<canonical_amplicon>AATATTTGGCTCTTTATGACAAGCGGGGGAAAAGGGGGGGGGGGGCCCAAGTGGAAAAATTATGCCTGAGTTGATATTTACCGATTTTTTCCAGTTTTGTGATCGTTTCCATTAAAATTTCGAACTTTGAACACTTTTCATAATTTTTTGAAAATATCAG</canonical_amplicon>
		<polymorphic_amplicon>AATATTTGGCTCTTTATGACAAGCGGGGGAAAAGGGGGGGGGGGGCCCAAGTGGAAAAATTATGCCTGAGTTGATATTTACCGATTTTTTCCAGTTTTGTGATCGTTTCCATTAAAATTTCGAACTTTGAACACTTTTCRTAATTTTTTGAAAATATCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35245</snp_id>
        <super_contig>c009801367.Contig1</super_contig>
        <contig_pos>18803</contig_pos>
        <strand>+</strand>
        <context>CTGCGTCAAT[G/T]CGAACTTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTCTCAATATTGAAGCCACTTGTCGGATGTGGAGCCATCACTGCGTCAAT</left_flank>
        <right_flank>CGAACTTTCTTTAGACGGCGGACAATAGAGGTTTTGCCGGAACCGTCTAG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATATTTTATACAGGACATGTGCCATTCAAACGACTCAAGCAAACAGTTATCTGATCCAGTATTTGATCTATTCCTGATCCTTGTGCCGCATCGCAAAAATGAAGTTCATGTTGGAAGGGAAGCGCCTCCAACTGTGACATGAGTACATCCATGTGCCCATTCAAAGAGGAAGCGCCGCTGAAAATTTCAATCCTATTTTATAAAAACTAAAATTGTAAAACTGACCCTTTCCTGTTGATTGCCACAATTACTGGACAAGAAATCAGCAACGGATCACTCATAACCTTATTTAACTCTTTGATTGCTTCATTGAATCTTTCCACTGCATGCCCATCGATAACATAAAAAATAGCCTGAGCATTTGAATAATAATGCTTCCAGAGATTCCGTAATTTAGGAAGACCTCCGACGTCCCAAACATTCAATCGATAGTTTTTATAATGGATTGTCTCAATATTGAAGCCACTTGTCGGATGTGGAGCCATCACTGCGTCAATGCGAACTTTCTTTAGACGGCGGACAATAGAGGTTTTGCCGGAACCGTCTAGTCCTGAAACTTAAATTTCTACTAAGTGAAAACCTTTTTTATCTCACCCAATAAGACCACTCGAGCTTCAATAAAATCTCCAATATGCAATTTTCGATCATTTGAAAATGAGAACGCAATTCTAGTCCTCAATTGTGATCGATCAGGAACTTCAGTCGGTTCGGCATTAGTTGACTCAGCCAAAGCCAACAAATCATCTTTTCTATCCAGAATATTGTCCTTCTCCAAAACTAAAGCCTTTTGAAGAGTGATGCACGTGGACCCAATTTTTGTAGAAACAGCTTCTAGTCGATCTTTTTGAGCTTGAAGACTTTCGAGTCTGTTTCGCGCGTAGCGGTCTAAAGTCTCAAGTGCATGGATTTCATCTTGATCAAGGGTAGAATGGAGGCGGTAGAAATGGTTGCGAATCTGAAACAATAGACATTTAGAATACTTCAACCTTTTATATTAA</canonical>
            <polymorphic>GTATATTTTATACAGGACATGTGCCATTCAAACGACTCAAGCAAACAGTTATCTGATCCAGTATTTGATCTATTCCTGATCCTTGTGCCGCATCGCAAAAATGAAGTTCATGTTGGAAGGGAAGCGCCTCCAACTGTGACATGAGTACATCCATGTGCCCATTCAAAGAGGAAGCGCCGCTGAAAATTTCAATCCTATTTTATAAAAACTAAAATTGTAAAACTGACCCTTTCCTGTTGATTGCCACAATTACTGGACAAGAAATCAGCAACGGATCACTCATAACCTTATTTAACTCTTTGATTGCTTCATTGAATCTTTCCACTGCATGCCCATCGATAACATAAAAAATAGCCTGAGCATTTGAATAATAATGCTTCCAGAGATTCCGTAATTTAGGAAGACCTCCGACGTCCCAAACATTCAATCGATAGTTTTTATAATGGATTGTCTCAATATTGAAGCCACTTGTCGGATGTGGAGCCATCACTGCGTCAATKCGAACTTTCTTTAGACGGCGGACAATAGAGGTTTTGCCGGAACCGTCTAGTCCTGAAACTTAAATTTCTACTAAGTGAAAACCTTTTTTATCTCACCCAATAAGACCACTCGAGCTTCAATAAAATCTCCAATATGCAATTTTCGATCATTTGAAAATGAGAACGCAATTCTAGTCCTCAATTGTGATCGATCAGGAACTTCAGTCGGTTCGGCATTAGTTGACTCAGCCAAAGCCAACAAATCATCTTTTCTATCCAGAATATTGTCCTTCTCCAAAACTAAAGCCTTTTGAAGAGTGATGCACGTGGACCCAATTTTTGTAGAAACAGCTTCTAGTCGATCTTTTTGAGCTTGAAGACTTTCGAGTCTGTTTCGCGCGTAGCGGTCTAAAGTCTCAAGTGCATGGATTTCATCTTGATCAAGGGTAGAATGGAGGCGGTAGAAATGGTTGCGAATCTGAAACAATAGACATTTAGAATACTTCAACCTTTTATATTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAATAATAATGCTTCCAGAG</pcr_primer_p1>
		<pcr_primer_p2>AGTGGTCTTATTGGGTGAGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTGAATAATAATGCTTCCAGAGATTCCGTAATTTAGGAAGACCTCCGACGTCCCAAACATTCAATCGATAGTTTTTATAATGGATTGTCTCAATATTGAAGCCACTTGTCGGATGTGGAGCCATCACTGCGTCAATGCGAACTTTCTTTAGACGGCGGACAATAGAGGTTTTGCCGGAACCGTCTAGTCCTGAAACTTAAATTTCTACTAAGTGAAAACCTTTTTTATCTCACCCAATAAGACCACT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAATAATAATGCTTCCAGAGATTCCGTAATTTAGGAAGACCTCCGACGTCCCAAACATTCAATCGATAGTTTTTATAATGGATTGTCTCAATATTGAAGCCACTTGTCGGATGTGGAGCCATCACTGCGTCAATKCGAACTTTCTTTAGACGGCGGACAATAGAGGTTTTGCCGGAACCGTCTAGTCCTGAAACTTAAATTTCTACTAAGTGAAAACCTTTTTTATCTCACCCAATAAGACCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35246</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>8710</contig_pos>
        <strand>-</strand>
        <context>AAGACGCGGC[A/G]GAAAAATRTR</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGC</left_flank>
        <right_flank>GAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGGTGCTTGTGAAAAAATTGTTCTCGGCTTGCGGTGAACTATTTTTCGGCTTGATATCTATTTCTGGCAATAATTAAGGAAATAGCAAAACCAATACTACGCGCCCCCATCCTGTGTCAAGGTGCGCACACAAAAGACGTCAGTGAAGAAAATTGTGCGCACATTGGGTTCTCTAAAAAAAAACAGTGAACGGGTACGGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTC</canonical>
            <polymorphic>GATGGTGCTTGTGAAAAAATTGTTCTCGGCTTGCGGTGAACTATTTTTCGGCTTGATATCTATTTCTGGCAATAATTAAGGAAATAGCAAAACCAATACTACGCGCCCCCATCCTGTGTCAAGGTGCGCACACAAAAGACGTCAGTGAAGAAAATTGTGCGCACATTGGGTTCTCTAAAAAAAAACAGTGAACGGGTACGGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCRGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>499 426 75</canonical_bands>
                <polymorphic_bands>925 75</polymorphic_bands>
            </assay>
            <assay>
                <site>CGGCCG</site>
                <isoschizomers>
                    <enzyme>BseX3I</enzyme>
                    <enzyme>BstZI</enzyme>
                    <enzyme>EagI</enzyme>
                    <enzyme>EclXI</enzyme>
                    <enzyme>Eco52I</enzyme>
                    <enzyme>XmaIII</enzyme>
                </isoschizomers>
                <canonical_bands>496 426 78</canonical_bands>
                <polymorphic_bands>922 78</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>498 426 76</canonical_bands>
                <polymorphic_bands>924 76</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>496 426 78</canonical_bands>
                <polymorphic_bands>922 78</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>188 142 122 94 76 69 68 65 37 35 29 25 22 19 9</canonical_bands>
                <polymorphic_bands>188 142 122 94 87 76 69 65 37 35 29 25 22 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAGCTATAGAATCAGTTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATTAAAAATCCGGAATAACG</pcr_primer_p2>
		<pcr_amplicon_size>290</pcr_amplicon_size>
		<canonical_amplicon>TGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATT</canonical_amplicon>
		<polymorphic_amplicon>TGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCRGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35247</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>8718</contig_pos>
        <strand>-</strand>
        <context>GCRGAAAAAT[A/G]TRGTRTGSTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAAT</left_flank>
        <right_flank>TCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTGAAAAAATTGTTCTCGGCTTGCGGTGAACTATTTTTCGGCTTGATATCTATTTCTGGCAATAATTAAGGAAATAGCAAAACCAATACTACGCGCCCCCATCCTGTGTCAAGGTGCGCACACAAAAGACGTCAGTGAAGAAAATTGTGCGCACATTGGGTTCTCTAAAAAAAAACAGTGAACGGGTACGGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAA</canonical>
            <polymorphic>TTGTGAAAAAATTGTTCTCGGCTTGCGGTGAACTATTTTTCGGCTTGATATCTATTTCTGGCAATAATTAAGGAAATAGCAAAACCAATACTACGCGCCCCCATCCTGTGTCAAGGTGCGCACACAAAAGACGTCAGTGAAGAAAATTGTGCGCACATTGGGTTCTCTAAAAAAAAACAGTGAACGGGTACGGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATRTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAGAAGTTTTTGACGAAGATA</pcr_primer_p1>
		<pcr_primer_p2>AAACTGTCGGATGACTGGTA</pcr_primer_p2>
		<pcr_amplicon_size>182</pcr_amplicon_size>
		<canonical_amplicon>AACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTT</canonical_amplicon>
		<polymorphic_amplicon>AACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATRTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35248</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>8720</contig_pos>
        <strand>-</strand>
        <context>RGAAAAATRT[A/G]GTRTGSTAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCT</left_flank>
        <right_flank>GTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGAAAAAATTGTTCTCGGCTTGCGGTGAACTATTTTTCGGCTTGATATCTATTTCTGGCAATAATTAAGGAAATAGCAAAACCAATACTACGCGCCCCCATCCTGTGTCAAGGTGCGCACACAAAAGACGTCAGTGAAGAAAATTGTGCGCACATTGGGTTCTCTAAAAAAAAACAGTGAACGGGTACGGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAG</canonical>
            <polymorphic>GTGAAAAAATTGTTCTCGGCTTGCGGTGAACTATTTTTCGGCTTGATATCTATTTCTGGCAATAATTAAGGAAATAGCAAAACCAATACTACGCGCCCCCATCCTGTGTCAAGGTGCGCACACAAAAGACGTCAGTGAAGAAAATTGTGCGCACATTGGGTTCTCTAAAAAAAAACAGTGAACGGGTACGGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTRGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAGAAGTTTTTGACGAAGATA</pcr_primer_p1>
		<pcr_primer_p2>AAACTGTCGGATGACTGGTA</pcr_primer_p2>
		<pcr_amplicon_size>182</pcr_amplicon_size>
		<canonical_amplicon>AACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTT</canonical_amplicon>
		<polymorphic_amplicon>AACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTRGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35249</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>8723</contig_pos>
        <strand>-</strand>
        <context>AAAATRTRGT[A/G]TGSTAAAGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGT</left_flank>
        <right_flank>TGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAATTGTTCTCGGCTTGCGGTGAACTATTTTTCGGCTTGATATCTATTTCTGGCAATAATTAAGGAAATAGCAAAACCAATACTACGCGCCCCCATCCTGTGTCAAGGTGCGCACACAAAAGACGTCAGTGAAGAAAATTGTGCGCACATTGGGTTCTCTAAAAAAAAACAGTGAACGGGTACGGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATA</canonical>
            <polymorphic>AAAAAATTGTTCTCGGCTTGCGGTGAACTATTTTTCGGCTTGATATCTATTTCTGGCAATAATTAAGGAAATAGCAAAACCAATACTACGCGCCCCCATCCTGTGTCAAGGTGCGCACACAAAAGACGTCAGTGAAGAAAATTGTGCGCACATTGGGTTCTCTAAAAAAAAACAGTGAACGGGTACGGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTRTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAGAAGTTTTTGACGAAGATA</pcr_primer_p1>
		<pcr_primer_p2>AAACTGTCGGATGACTGGTA</pcr_primer_p2>
		<pcr_amplicon_size>182</pcr_amplicon_size>
		<canonical_amplicon>AACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTT</canonical_amplicon>
		<polymorphic_amplicon>AACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTRTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35250</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>8726</contig_pos>
        <strand>-</strand>
        <context>ATRTRGTRTG[C/G]TAAAGAGTGR</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTG</left_flank>
        <right_flank>TAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTGTTCTCGGCTTGCGGTGAACTATTTTTCGGCTTGATATCTATTTCTGGCAATAATTAAGGAAATAGCAAAACCAATACTACGCGCCCCCATCCTGTGTCAAGGTGCGCACACAAAAGACGTCAGTGAAGAAAATTGTGCGCACATTGGGTTCTCTAAAAAAAAACAGTGAACGGGTACGGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATT</canonical>
            <polymorphic>AAATTGTTCTCGGCTTGCGGTGAACTATTTTTCGGCTTGATATCTATTTCTGGCAATAATTAAGGAAATAGCAAAACCAATACTACGCGCCCCCATCCTGTGTCAAGGTGCGCACACAAAAGACGTCAGTGAAGAAAATTGTGCGCACATTGGGTTCTCTAAAAAAAAACAGTGAACGGGTACGGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGSTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAGAAGTTTTTGACGAAGATA</pcr_primer_p1>
		<pcr_primer_p2>AAACTGTCGGATGACTGGTA</pcr_primer_p2>
		<pcr_amplicon_size>182</pcr_amplicon_size>
		<canonical_amplicon>AACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTT</canonical_amplicon>
		<polymorphic_amplicon>AACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGSTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35251</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>8736</contig_pos>
        <strand>-</strand>
        <context>STAAAGAGTG[A/G]CCTCCCCCCC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTG</left_flank>
        <right_flank>CCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGCTTGCGGTGAACTATTTTTCGGCTTGATATCTATTTCTGGCAATAATTAAGGAAATAGCAAAACCAATACTACGCGCCCCCATCCTGTGTCAAGGTGCGCACACAAAAGACGTCAGTGAAGAAAATTGTGCGCACATTGGGTTCTCTAAAAAAAAACAGTGAACGGGTACGGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATTTCTCTAATTG</canonical>
            <polymorphic>CGGCTTGCGGTGAACTATTTTTCGGCTTGATATCTATTTCTGGCAATAATTAAGGAAATAGCAAAACCAATACTACGCGCCCCCATCCTGTGTCAAGGTGCGCACACAAAAGACGTCAGTGAAGAAAATTGTGCGCACATTGGGTTCTCTAAAAAAAAACAGTGAACGGGTACGGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGRCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATTTCTCTAATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>501 378 121</canonical_bands>
                <polymorphic_bands>879 121</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 378 121</canonical_bands>
                <polymorphic_bands>879 121</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAGAAGTTTTTGACGAAGATA</pcr_primer_p1>
		<pcr_primer_p2>AAACTGTCGGATGACTGGTA</pcr_primer_p2>
		<pcr_amplicon_size>182</pcr_amplicon_size>
		<canonical_amplicon>AACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTT</canonical_amplicon>
		<polymorphic_amplicon>AACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGRCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35252</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>8777</contig_pos>
        <strand></strand>
        <context>TAATTTAAAG[C/T]TTGTCGTTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAG</left_flank>
        <right_flank>TTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCAATAATTAAGGAAATAGCAAAACCAATACTACGCGCCCCCATCCTGTGTCAAGGTGCGCACACAAAAGACGTCAGTGAAGAAAATTGTGCGCACATTGGGTTCTCTAAAAAAAAACAGTGAACGGGTACGGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATTTCTCTAATTGCTCATTAGACACTCAAAGATTCACGAAAGGCCTCCGCAAGA</canonical>
            <polymorphic>GGCAATAATTAAGGAAATAGCAAAACCAATACTACGCGCCCCCATCCTGTGTCAAGGTGCGCACACAAAAGACGTCAGTGAAGAAAATTGTGCGCACATTGGGTTCTCTAAAAAAAAACAGTGAACGGGTACGGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGYTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATTTCTCTAATTGCTCATTAGACACTCAAAGATTCACGAAAGGCCTCCGCAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>501 209 103 87 65 35</canonical_bands>
                <polymorphic_bands>588 209 103 65 35</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>172 142 132 122 94 69 68 65 37 35 25 19 11 9</canonical_bands>
                <polymorphic_bands>172 162 142 132 122 69 65 37 35 25 19 11 9</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 255 242</canonical_bands>
                <polymorphic_bands>758 242</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAGAAGTTTTTGACGAAGATA</pcr_primer_p1>
		<pcr_primer_p2>AAACTGTCGGATGACTGGTA</pcr_primer_p2>
		<pcr_amplicon_size>182</pcr_amplicon_size>
		<canonical_amplicon>AACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTT</canonical_amplicon>
		<polymorphic_amplicon>AACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGYTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35253</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>8797</contig_pos>
        <strand>-</strand>
        <context>GATCCGAAAT[A/C/T/G]TTCCCACATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C/T/G</alleles>
        <left_flank>CCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAAT</left_flank>
        <right_flank>TTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAACCAATACTACGCGCCCCCATCCTGTGTCAAGGTGCGCACACAAAAGACGTCAGTGAAGAAAATTGTGCGCACATTGGGTTCTCTAAAAAAAAACAGTGAACGGGTACGGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATTTCTCTAATTGCTCATTAGACACTCAAAGATTCACGAAAGGCCTCCGCAAGAAGACGCCAAAAATCGATAAT</canonical>
            <polymorphic>CAAAACCAATACTACGCGCCCCCATCCTGTGTCAAGGTGCGCACACAAAAGACGTCAGTGAAGAAAATTGTGCGCACATTGGGTTCTCTAAAAAAAAACAGTGAACGGGTACGGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATMTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATTTCTCTAATTGCTCATTAGACACTCAAAGATTCACGAAAGGCCTCCGCAAGAAGACGCCAAAAATCGATAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>375 360 144 121</canonical_bands>
                <polymorphic_bands>735 144 121</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>308 218 131 69 66 65 56 52 26 9</canonical_bands>
                <polymorphic_bands>334 218 131 69 66 65 56 52 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGATAAAGCTGAAATCAGAAGAC</pcr_primer_p1>
		<pcr_primer_p2>GTCAGTTGCAAATATTGTGATG</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>AAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGAC</canonical_amplicon>
		<polymorphic_amplicon>AAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATMTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35254</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>8852</contig_pos>
        <strand>-</strand>
        <context>GTTTTCCATC[C/T]AAATACAGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATC</left_flank>
        <right_flank>AAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTGAAGAAAATTGTGCGCACATTGGGTTCTCTAAAAAAAAACAGTGAACGGGTACGGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATTTCTCTAATTGCTCATTAGACACTCAAAGATTCACGAAAGGCCTCCGCAAGAAGACGCCAAAAATCGATAATCTTCAATGCTATTCATAGTATGGTCTTTTCTCGAACAGGCGATATGACGACGCTC</canonical>
            <polymorphic>CAGTGAAGAAAATTGTGCGCACATTGGGTTCTCTAAAAAAAAACAGTGAACGGGTACGGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCYAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATTTCTCTAATTGCTCATTAGACACTCAAAGATTCACGAAAGGCCTCCGCAAGAAGACGCCAAAAATCGATAATCTTCAATGCTATTCATAGTATGGTCTTTTCTCGAACAGGCGATATGACGACGCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 440 38 23</canonical_bands>
                <polymorphic_bands>939 38 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGATAAAGCTGAAATCAGAAGAC</pcr_primer_p1>
		<pcr_primer_p2>GTCAGTTGCAAATATTGTGATG</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>AAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGAC</canonical_amplicon>
		<polymorphic_amplicon>AAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCYAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35255</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>8868</contig_pos>
        <strand></strand>
        <context>CAGCAATGTT[T/A]WGCCCTRYKT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTT</left_flank>
        <right_flank>AGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGCACATTGGGTTCTCTAAAAAAAAACAGTGAACGGGTACGGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATTTCTCTAATTGCTCATTAGACACTCAAAGATTCACGAAAGGCCTCCGCAAGAAGACGCCAAAAATCGATAATCTTCAATGCTATTCATAGTATGGTCTTTTCTCGAACAGGCGATATGACGACGCTCTTGTTGGAAATCTTGA</canonical>
            <polymorphic>GCGCACATTGGGTTCTCTAAAAAAAAACAGTGAACGGGTACGGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTWAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATTTCTCTAATTGCTCATTAGACACTCAAAGATTCACGAAAGGCCTCCGCAAGAAGACGCCAAAAATCGATAATCTTCAATGCTATTCATAGTATGGTCTTTTCTCGAACAGGCGATATGACGACGCTCTTGTTGGAAATCTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTGCTTGTTACCAGTCATC</pcr_primer_p1>
		<pcr_primer_p2>AGAACTTTTTGATGCGAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCT</canonical_amplicon>
		<polymorphic_amplicon>CCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTWAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35256</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>8869</contig_pos>
        <strand>-</strand>
        <context>AGCAATGTTW[A/T]GCCCTRYKTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTT</left_flank>
        <right_flank>GCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCACATTGGGTTCTCTAAAAAAAAACAGTGAACGGGTACGGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATTTCTCTAATTGCTCATTAGACACTCAAAGATTCACGAAAGGCCTCCGCAAGAAGACGCCAAAAATCGATAATCTTCAATGCTATTCATAGTATGGTCTTTTCTCGAACAGGCGATATGACGACGCTCTTGTTGGAAATCTTGAA</canonical>
            <polymorphic>CGCACATTGGGTTCTCTAAAAAAAAACAGTGAACGGGTACGGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTWGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATTTCTCTAATTGCTCATTAGACACTCAAAGATTCACGAAAGGCCTCCGCAAGAAGACGCCAAAAATCGATAATCTTCAATGCTATTCATAGTATGGTCTTTTCTCGAACAGGCGATATGACGACGCTCTTGTTGGAAATCTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>142 132 122 103 94 80 69 68 65 37 35 25 19 9</canonical_bands>
                <polymorphic_bands>236 132 122 103 80 69 68 65 37 35 25 19 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTGCTTGTTACCAGTCATC</pcr_primer_p1>
		<pcr_primer_p2>AGAACTTTTTGATGCGAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCT</canonical_amplicon>
		<polymorphic_amplicon>CCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTWGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35257</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>8875</contig_pos>
        <strand></strand>
        <context>GTTWWGCCCT[A/G]YKTCCTTCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCT</left_flank>
        <right_flank>CGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGAT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGGTTCTCTAAAAAAAAACAGTGAACGGGTACGGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATTTCTCTAATTGCTCATTAGACACTCAAAGATTCACGAAAGGCCTCCGCAAGAAGACGCCAAAAATCGATAATCTTCAATGCTATTCATAGTATGGTCTTTTCTCGAACAGGCGATATGACGACGCTCTTGTTGGAAATCTTGAATTTTGC</canonical>
            <polymorphic>TTGGGTTCTCTAAAAAAAAACAGTGAACGGGTACGGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTRCGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATTTCTCTAATTGCTCATTAGACACTCAAAGATTCACGAAAGGCCTCCGCAAGAAGACGCCAAAAATCGATAATCTTCAATGCTATTCATAGTATGGTCTTTTCTCGAACAGGCGATATGACGACGCTCTTGTTGGAAATCTTGAATTTTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>500 406 94</canonical_bands>
                <polymorphic_bands>594 406</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTGCTTGTTACCAGTCATC</pcr_primer_p1>
		<pcr_primer_p2>AGAACTTTTTGATGCGAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCT</canonical_amplicon>
		<polymorphic_amplicon>CCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTRCGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35258</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>8876</contig_pos>
        <strand>-</strand>
        <context>TTWWGCCCTR[C/T/A]KTCCTTCTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T/A</alleles>
        <left_flank>TACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTA</left_flank>
        <right_flank>GTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGGTTCTCTAAAAAAAAACAGTGAACGGGTACGGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATTTCTCTAATTGCTCATTAGACACTCAAAGATTCACGAAAGGCCTCCGCAAGAAGACGCCAAAAATCGATAATCTTCAATGCTATTCATAGTATGGTCTTTTCTCGAACAGGCGATATGACGACGCTCTTGTTGGAAATCTTGAATTTTGCC</canonical>
            <polymorphic>TGGGTTCTCTAAAAAAAAACAGTGAACGGGTACGGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTAYGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATTTCTCTAATTGCTCATTAGACACTCAAAGATTCACGAAAGGCCTCCGCAAGAAGACGCCAAAAATCGATAATCTTCAATGCTATTCATAGTATGGTCTTTTCTCGAACAGGCGATATGACGACGCTCTTGTTGGAAATCTTGAATTTTGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>499 407 94</canonical_bands>
                <polymorphic_bands>593 407</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTGCTTGTTACCAGTCATC</pcr_primer_p1>
		<pcr_primer_p2>AGAACTTTTTGATGCGAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCT</canonical_amplicon>
		<polymorphic_amplicon>CCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTAYGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35259</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>8877</contig_pos>
        <strand>-</strand>
        <context>TWWGCCCTRY[G/T]TCCTTCTGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTAC</left_flank>
        <right_flank>TCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGTTCTCTAAAAAAAAACAGTGAACGGGTACGGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATTTCTCTAATTGCTCATTAGACACTCAAAGATTCACGAAAGGCCTCCGCAAGAAGACGCCAAAAATCGATAATCTTCAATGCTATTCATAGTATGGTCTTTTCTCGAACAGGCGATATGACGACGCTCTTGTTGGAAATCTTGAATTTTGCCA</canonical>
            <polymorphic>GGGTTCTCTAAAAAAAAACAGTGAACGGGTACGGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACKTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATTTCTCTAATTGCTCATTAGACACTCAAAGATTCACGAAAGGCCTCCGCAAGAAGACGCCAAAAATCGATAATCTTCAATGCTATTCATAGTATGGTCTTTTCTCGAACAGGCGATATGACGACGCTCTTGTTGGAAATCTTGAATTTTGCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>498 408 94</canonical_bands>
                <polymorphic_bands>592 408</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTGCTTGTTACCAGTCATC</pcr_primer_p1>
		<pcr_primer_p2>AGAACTTTTTGATGCGAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCT</canonical_amplicon>
		<polymorphic_amplicon>CCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACKTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35260</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>8898</contig_pos>
        <strand></strand>
        <context>GCATCCCGTT[A/T]WTGAATCGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTT</left_flank>
        <right_flank>TTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAACGGGTACGGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATTTCTCTAATTGCTCATTAGACACTCAAAGATTCACGAAAGGCCTCCGCAAGAAGACGCCAAAAATCGATAATCTTCAATGCTATTCATAGTATGGTCTTTTCTCGAACAGGCGATATGACGACGCTCTTGTTGGAAATCTTGAATTTTGCCAGTTTCCAATAGTCGATGTGAT</canonical>
            <polymorphic>TGAACGGGTACGGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTWTTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATTTCTCTAATTGCTCATTAGACACTCAAAGATTCACGAAAGGCCTCCGCAAGAAGACGCCAAAAATCGATAATCTTCAATGCTATTCATAGTATGGTCTTTTCTCGAACAGGCGATATGACGACGCTCTTGTTGGAAATCTTGAATTTTGCCAGTTTCCAATAGTCGATGTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTGCTTGTTACCAGTCATC</pcr_primer_p1>
		<pcr_primer_p2>AGAACTTTTTGATGCGAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCT</canonical_amplicon>
		<polymorphic_amplicon>CCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTWTTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35261</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>8899</contig_pos>
        <strand>-</strand>
        <context>CATCCCGTTW[A/T]TGAATCGTCR</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTA</left_flank>
        <right_flank>TGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACGGGTACGGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATTTCTCTAATTGCTCATTAGACACTCAAAGATTCACGAAAGGCCTCCGCAAGAAGACGCCAAAAATCGATAATCTTCAATGCTATTCATAGTATGGTCTTTTCTCGAACAGGCGATATGACGACGCTCTTGTTGGAAATCTTGAATTTTGCCAGTTTCCAATAGTCGATGTGATC</canonical>
            <polymorphic>GAACGGGTACGGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTAWTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATTTCTCTAATTGCTCATTAGACACTCAAAGATTCACGAAAGGCCTCCGCAAGAAGACGCCAAAAATCGATAATCTTCAATGCTATTCATAGTATGGTCTTTTCTCGAACAGGCGATATGACGACGCTCTTGTTGGAAATCTTGAATTTTGCCAGTTTCCAATAGTCGATGTGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTGCTTGTTACCAGTCATC</pcr_primer_p1>
		<pcr_primer_p2>AGAACTTTTTGATGCGAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCT</canonical_amplicon>
		<polymorphic_amplicon>CCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTAWTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35262</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>8909</contig_pos>
        <strand>-</strand>
        <context>WTGAATCGTC[A/G/T/C]ACCACAAATG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G/T/C</alleles>
        <left_flank>AGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTC</left_flank>
        <right_flank>ACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTG</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATTTCTCTAATTGCTCATTAGACACTCAAAGATTCACGAAAGGCCTCCGCAAGAAGACGCCAAAAATCGATAATCTTCAATGCTATTCATAGTATGGTCTTTTCTCGAACAGGCGATATGACGACGCTCTTGTTGGAAATCTTGAATTTTGCCAGTTTCCAATAGTCGATGTGATCGTAGATGTTA</canonical>
            <polymorphic>GGTTTGCAAAATTCGGAGTAAAAATAAACAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCRACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATTTCTCTAATTGCTCATTAGACACTCAAAGATTCACGAAAGGCCTCCGCAAGAAGACGCCAAAAATCGATAATCTTCAATGCTATTCATAGTATGGTCTTTTCTCGAACAGGCGATATGACGACGCTCTTGTTGGAAATCTTGAATTTTGCCAGTTTCCAATAGTCGATGTGATCGTAGATGTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>498 282 220</canonical_bands>
                <polymorphic_bands>718 282</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTGCTTGTTACCAGTCATC</pcr_primer_p1>
		<pcr_primer_p2>AGAACTTTTTGATGCGAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCT</canonical_amplicon>
		<polymorphic_amplicon>CCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCRACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35263</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>8937</contig_pos>
        <strand>-</strand>
        <context>GCAAGATTAC[A/T]TGTAATGCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTAC</left_flank>
        <right_flank>TGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATTTCTCTAATTGCTCATTAGACACTCAAAGATTCACGAAAGGCCTCCGCAAGAAGACGCCAAAAATCGATAATCTTCAATGCTATTCATAGTATGGTCTTTTCTCGAACAGGCGATATGACGACGCTCTTGTTGGAAATCTTGAATTTTGCCAGTTTCCAATAGTCGATGTGATCGTAGATGTTATAATGATGATACAGCGATATTTTTTTTG</canonical>
            <polymorphic>CAGAAACAGAAGCCTCTAGTTGTAAGAAAAATGAAAAATGACATTGAAGCTATAGAATCAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACWTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATTTCTCTAATTGCTCATTAGACACTCAAAGATTCACGAAAGGCCTCCGCAAGAAGACGCCAAAAATCGATAATCTTCAATGCTATTCATAGTATGGTCTTTTCTCGAACAGGCGATATGACGACGCTCTTGTTGGAAATCTTGAATTTTGCCAGTTTCCAATAGTCGATGTGATCGTAGATGTTATAATGATGATACAGCGATATTTTTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTGCTTGTTACCAGTCATC</pcr_primer_p1>
		<pcr_primer_p2>AGAACTTTTTGATGCGAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCT</canonical_amplicon>
		<polymorphic_amplicon>CCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACWTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35264</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>8995</contig_pos>
        <strand>-</strand>
        <context>GCAGATGAAG[G/T/A/C]TACTGTGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T/A/C</alleles>
        <left_flank>CCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAG</left_flank>
        <right_flank>TACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATTTCTCTAATTGCTCATTAGACACTCAAAGATTCACGAAAGGCCTCCGCAAGAAGACGCCAAAAATCGATAATCTTCAATGCTATTCATAGTATGGTCTTTTCTCGAACAGGCGATATGACGACGCTCTTGTTGGAAATCTTGAATTTTGCCAGTTTCCAATAGTCGATGTGATCGTAGATGTTATAATGATGATACAGCGATATTTTTTTTGTCCAAGAACTACCGTTAATTCTGCACCGATAACGGCGATGTCCGATCATTACGAAACG</canonical>
            <polymorphic>CAGTTCAAAACGCATTGACCAAAAAGCTTTTCAGCAGGCAACTAGGAAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGKTACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATTTCTCTAATTGCTCATTAGACACTCAAAGATTCACGAAAGGCCTCCGCAAGAAGACGCCAAAAATCGATAATCTTCAATGCTATTCATAGTATGGTCTTTTCTCGAACAGGCGATATGACGACGCTCTTGTTGGAAATCTTGAATTTTGCCAGTTTCCAATAGTCGATGTGATCGTAGATGTTATAATGATGATACAGCGATATTTTTTTTGTCCAAGAACTACCGTTAATTCTGCACCGATAACGGCGATGTCCGATCATTACGAAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTGCTTGTTACCAGTCATC</pcr_primer_p1>
		<pcr_primer_p2>AGAACTTTTTGATGCGAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCT</canonical_amplicon>
		<polymorphic_amplicon>CCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGKTACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35265</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>9041</contig_pos>
        <strand>-</strand>
        <context>AGTAGAATAA[A/G]AGCAAACTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAA</left_flank>
        <right_flank>AGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATTTCTCTAATTGCTCATTAGACACTCAAAGATTCACGAAAGGCCTCCGCAAGAAGACGCCAAAAATCGATAATCTTCAATGCTATTCATAGTATGGTCTTTTCTCGAACAGGCGATATGACGACGCTCTTGTTGGAAATCTTGAATTTTGCCAGTTTCCAATAGTCGATGTGATCGTAGATGTTATAATGATGATACAGCGATATTTTTTTTGTCCAAGAACTACCGTTAATTCTGCACCGATAACGGCGATGTCCGATCATTACGAAACGGTTGTGACTTACAGTGGCGACATAATTCCCTTTTCCTTCAATGAAA</canonical>
            <polymorphic>AAGGTTCATTAGAACTGATGATTCGTGCCAACAATACACATCCAGCTGCTCCAGCCGACAACAAAAATATTTGGAACGGCTGTCGTGCGGTTTCCAATTATTTGAGAACAGCAATGGAAAGAAACAGAAGTTTTTGACGAAGATAAAGCTGAAATCAGAAGACGCGGCCGAAAAATCTCGTCTGCTAAAGAGTGCCCTCCCCCCCCCCCCGTTATTCCGGATTTTTAATTTAAAGCTTGTCGTTGGATCCGAAATTTTCCCACATTTACATCTTTCCTGCTTGTTACCAGTCATCCGACAGTTTTCCATCGAAATACAGCAATGTTTAGCCCTACGTCCTTCTGTGGCATCCCGTTATTGAATCGTCTACCACAAATGTCGGATGGCAAGATTACTTGTAATGCCATCACAATATTTGCAACTGACGACGTTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAARAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATTTCTCTAATTGCTCATTAGACACTCAAAGATTCACGAAAGGCCTCCGCAAGAAGACGCCAAAAATCGATAATCTTCAATGCTATTCATAGTATGGTCTTTTCTCGAACAGGCGATATGACGACGCTCTTGTTGGAAATCTTGAATTTTGCCAGTTTCCAATAGTCGATGTGATCGTAGATGTTATAATGATGATACAGCGATATTTTTTTTGTCCAAGAACTACCGTTAATTCTGCACCGATAACGGCGATGTCCGATCATTACGAAACGGTTGTGACTTACAGTGGCGACATAATTCCCTTTTCCTTCAATGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCATTTATCAAGCAGATGAAG</pcr_primer_p1>
		<pcr_primer_p2>TAACGGTAGTTCTTGGACAAA</pcr_primer_p2>
		<pcr_amplicon_size>483</pcr_amplicon_size>
		<canonical_amplicon>TTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAACAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATTTCTCTAATTGCTCATTAGACACTCAAAGATTCACGAAAGGCCTCCGCAAGAAGACGCCAAAAATCGATAATCTTCAATGCTATTCATAGTATGGTCTTTTCTCGAACAGGCGATATGACGACGCTCTTGTTGGAAATCTTGAATTTTGCCAGTTTCCAATAGTCGATGTGATCGTAGATGTTATAATGATGATACAGCGATATTTTTTTTGTCCAAGAACTACCGTTA</canonical_amplicon>
		<polymorphic_amplicon>TTTCATTTATCAAGCAGATGAAGATACTGTGAAAAATACAGCCTCCAGATGCTATCCATAGTAGAATAARAGCAAACTTCGCATCAAAAAGTTCTTATGCCGATGGGATAACGATGGAAAGCGTTGTAGGAATTGGTGTGTGCCCAGAATGACGGTAGACCGGCCGAGAAATATTCGTTGTAAATTTTCATTGAGCGATGATCAATCAGTATTTCGTACTCTGCTGTGCAGTCGTAGTCTATCTAAAAGATAATTTCTCTAATTGCTCATTAGACACTCAAAGATTCACGAAAGGCCTCCGCAAGAAGACGCCAAAAATCGATAATCTTCAATGCTATTCATAGTATGGTCTTTTCTCGAACAGGCGATATGACGACGCTCTTGTTGGAAATCTTGAATTTTGCCAGTTTCCAATAGTCGATGTGATCGTAGATGTTATAATGATGATACAGCGATATTTTTTTTGTCCAAGAACTACCGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35266</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>11040</contig_pos>
        <strand>-</strand>
        <context>GATTTCAGTT[A/T]TCAACCCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGCAAAGATATCTTCTCCTGGTGAGTAGTTTCGCTGAATCGATTTCAGTT</left_flank>
        <right_flank>TCAACCCAAAAAGTTTGTAGCTAGTAACTCTAGTCTTGGCGAACTGAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGCTACTGGAAATGGCGATGGAGAGGAGGTGGCGTTGATGGATGTCAATGTGCTGCTCATGCTACTGGATGTCCAGCTAGACCACCAGGACCACCGGGAGATATTGGATTTGATTGAGATCAACAACACGCTGGACAAGATGGACAACCATTGGTTGATTCCGGAAGTGCTGGAGAACAATGCATCGCATGCCCAGCTAAACCAACAGGATCCCCACGACCAGATGAAAATGCTTGCTGAACCAACTGGATCCTTAGAAATGCCAGGACCAGACTAACAAGTTGGAGGTGCACCACAACGAGGACCGCCTAAACCACCAGGAGCACCAGGAAACGAACGACGGACAGGCAGAGCACCGGGACAAGATGGACAATCGGGACAAGACGGAATACGTGGAGTTCCTCAAACAGGACCACCACATCCATCAGGACCCTCAAACAACAACCTTCGCAAAGATATCTTCTCCTGGTGAGTAGTTTCGCTGAATCGATTTCAGTTTTCAACCCAAAAAGTTTGTAGCTAGTAACTCTAGTCTTGGCGAACTGAGAATGACTTTTCCGTGCCAAGAGACGATACGTTACAAACAGTGAAGATGTTCTGGAGGAAGCGGTTTATATGCGGCTGGTGGAGGGGCGGGTGTAGGTGGCTGCGGCGGATGCCAATGTACTGTTCAAGCTTTTGAATGCCCAGCTGGAACACCAGGACCACCGGAAGCGGCTGGACCTGATGAAGAACCAGGACAAGCTGACCAAGATAGACAGCCAGGGTCCGCTGGACTTTCCGGAACTGCGAAAGTGCTGTAAAACAATGCAACACATGCCCAGCTGGACCTTAGTTGATCATGCAGTACCACGAGGAAACAAGGGACAACCAGAAGGACCAGGACAATCAGAGGGCCATGAACTGACTGTGTAGCAAATGAAGTGGAGCAAAGTAAGCAAAGCGACGTAAGAGCGAATAGACTGGATGTGGAGCGAATAATGAATAAAGCGAGGTGAG</canonical>
            <polymorphic>ACGCTACTGGAAATGGCGATGGAGAGGAGGTGGCGTTGATGGATGTCAATGTGCTGCTCATGCTACTGGATGTCCAGCTAGACCACCAGGACCACCGGGAGATATTGGATTTGATTGAGATCAACAACACGCTGGACAAGATGGACAACCATTGGTTGATTCCGGAAGTGCTGGAGAACAATGCATCGCATGCCCAGCTAAACCAACAGGATCCCCACGACCAGATGAAAATGCTTGCTGAACCAACTGGATCCTTAGAAATGCCAGGACCAGACTAACAAGTTGGAGGTGCACCACAACGAGGACCGCCTAAACCACCAGGAGCACCAGGAAACGAACGACGGACAGGCAGAGCACCGGGACAAGATGGACAATCGGGACAAGACGGAATACGTGGAGTTCCTCAAACAGGACCACCACATCCATCAGGACCCTCAAACAACAACCTTCGCAAAGATATCTTCTCCTGGTGAGTAGTTTCGCTGAATCGATTTCAGTTWTCAACCCAAAAAGTTTGTAGCTAGTAACTCTAGTCTTGGCGAACTGAGAATGACTTTTCCGTGCCAAGAGACGATACGTTACAAACAGTGAAGATGTTCTGGAGGAAGCGGTTTATATGCGGCTGGTGGAGGGGCGGGTGTAGGTGGCTGCGGCGGATGCCAATGTACTGTTCAAGCTTTTGAATGCCCAGCTGGAACACCAGGACCACCGGAAGCGGCTGGACCTGATGAAGAACCAGGACAAGCTGACCAAGATAGACAGCCAGGGTCCGCTGGACTTTCCGGAACTGCGAAAGTGCTGTAAAACAATGCAACACATGCCCAGCTGGACCTTAGTTGATCATGCAGTACCACGAGGAAACAAGGGACAACCAGAAGGACCAGGACAATCAGAGGGCCATGAACTGACTGTGTAGCAAATGAAGTGGAGCAAAGTAAGCAAAGCGACGTAAGAGCGAATAGACTGGATGTGGAGCGAATAATGAATAAAGCGAGGTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATACGTGGAGTTCCTCAAAC</pcr_primer_p1>
		<pcr_primer_p2>CAGAACATCTTCACTGTTTGTAA</pcr_primer_p2>
		<pcr_amplicon_size>213</pcr_amplicon_size>
		<canonical_amplicon>AATACGTGGAGTTCCTCAAACAGGACCACCACATCCATCAGGACCCTCAAACAACAACCTTCGCAAAGATATCTTCTCCTGGTGAGTAGTTTCGCTGAATCGATTTCAGTTTTCAACCCAAAAAGTTTGTAGCTAGTAACTCTAGTCTTGGCGAACTGAGAATGACTTTTCCGTGCCAAGAGACGATACGTTACAAACAGTGAAGATGTTCTG</canonical_amplicon>
		<polymorphic_amplicon>AATACGTGGAGTTCCTCAAACAGGACCACCACATCCATCAGGACCCTCAAACAACAACCTTCGCAAAGATATCTTCTCCTGGTGAGTAGTTTCGCTGAATCGATTTCAGTTWTCAACCCAAAAAGTTTGTAGCTAGTAACTCTAGTCTTGGCGAACTGAGAATGACTTTTCCGTGCCAAGAGACGATACGTTACAAACAGTGAAGATGTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35267</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>11373</contig_pos>
        <strand>-</strand>
        <context>CAGCTGGACC[A/C/T/G]MAGTTGATCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C/T/G</alleles>
        <left_flank>CGGAACTGCGAAAGTGCTGTAAAACAATGCAACACATGCCCAGCTGGACC</left_flank>
        <right_flank>TAGTTGATCATGCAGTACCACGAGGAAACAAGGGACAACCAGAAGGACCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGAACGACGGACAGGCAGAGCACCGGGACAAGATGGACAATCGGGACAAGACGGAATACGTGGAGTTCCTCAAACAGGACCACCACATCCATCAGGACCCTCAAACAACAACCTTCGCAAAGATATCTTCTCCTGGTGAGTAGTTTCGCTGAATCGATTTCAGTTTTCAACCCAAAAAGTTTGTAGCTAGTAACTCTAGTCTTGGCGAACTGAGAATGACTTTTCCGTGCCAAGAGACGATACGTTACAAACAGTGAAGATGTTCTGGAGGAAGCGGTTTATATGCGGCTGGTGGAGGGGCGGGTGTAGGTGGCTGCGGCGGATGCCAATGTACTGTTCAAGCTTTTGAATGCCCAGCTGGAACACCAGGACCACCGGAAGCGGCTGGACCTGATGAAGAACCAGGACAAGCTGACCAAGATAGACAGCCAGGGTCCGCTGGACTTTCCGGAACTGCGAAAGTGCTGTAAAACAATGCAACACATGCCCAGCTGGACCTTAGTTGATCATGCAGTACCACGAGGAAACAAGGGACAACCAGAAGGACCAGGACAATCAGAGGGCCATGAACTGACTGTGTAGCAAATGAAGTGGAGCAAAGTAAGCAAAGCGACGTAAGAGCGAATAGACTGGATGTGGAGCGAATAATGAATAAAGCGAGGTGAGTATTTTTGTTTGACATTTGTTGAAAGAAAATCAGTATCTACTTCAATTAGTTTTCATTAAAAAGTTTCATAGCTCAAAAAATCATTTTCAACCTAACATCAATCTAAATGTAAGTGAAACAATTTGCAAATGATTAAATCCTTTGCAGGTCTTCACGATTCAAACGCTCTTGGTTTGGCAAACTGAGAAAGTCGCATTCGAAGGACTTTTCCGTGTCAACAGAGTACGGTACCGAGGGTGAAGATGAATATACTGTGAGAGGCGGAGGAGGGGATGGATACAAAAGTACTGCTCAAGCTTCTGGACGTTCAATTGGACCATAAAGACCACCGG</canonical>
            <polymorphic>ACGAACGACGGACAGGCAGAGCACCGGGACAAGATGGACAATCGGGACAAGACGGAATACGTGGAGTTCCTCAAACAGGACCACCACATCCATCAGGACCCTCAAACAACAACCTTCGCAAAGATATCTTCTCCTGGTGAGTAGTTTCGCTGAATCGATTTCAGTTTTCAACCCAAAAAGTTTGTAGCTAGTAACTCTAGTCTTGGCGAACTGAGAATGACTTTTCCGTGCCAAGAGACGATACGTTACAAACAGTGAAGATGTTCTGGAGGAAGCGGTTTATATGCGGCTGGTGGAGGGGCGGGTGTAGGTGGCTGCGGCGGATGCCAATGTACTGTTCAAGCTTTTGAATGCCCAGCTGGAACACCAGGACCACCGGAAGCGGCTGGACCTGATGAAGAACCAGGACAAGCTGACCAAGATAGACAGCCAGGGTCCGCTGGACTTTCCGGAACTGCGAAAGTGCTGTAAAACAATGCAACACATGCCCAGCTGGACCMTAGTTGATCATGCAGTACCACGAGGAAACAAGGGACAACCAGAAGGACCAGGACAATCAGAGGGCCATGAACTGACTGTGTAGCAAATGAAGTGGAGCAAAGTAAGCAAAGCGACGTAAGAGCGAATAGACTGGATGTGGAGCGAATAATGAATAAAGCGAGGTGAGTATTTTTGTTTGACATTTGTTGAAAGAAAATCAGTATCTACTTCAATTAGTTTTCATTAAAAAGTTTCATAGCTCAAAAAATCATTTTCAACCTAACATCAATCTAAATGTAAGTGAAACAATTTGCAAATGATTAAATCCTTTGCAGGTCTTCACGATTCAAACGCTCTTGGTTTGGCAAACTGAGAAAGTCGCATTCGAAGGACTTTTCCGTGTCAACAGAGTACGGTACCGAGGGTGAAGATGAATATACTGTGAGAGGCGGAGGAGGGGATGGATACAAAAGTACTGCTCAAGCTTCTGGACGTTCAATTGGACCATAAAGACCACCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>351 288 211 150</canonical_bands>
                <polymorphic_bands>639 211 150</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGCTGACCAAGATAGACAG</pcr_primer_p1>
		<pcr_primer_p2>CTTTATTCATTATTCGCTCCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAGCTGACCAAGATAGACAGCCAGGGTCCGCTGGACTTTCCGGAACTGCGAAAGTGCTGTAAAACAATGCAACACATGCCCAGCTGGACCTTAGTTGATCATGCAGTACCACGAGGAAACAAGGGACAACCAGAAGGACCAGGACAATCAGAGGGCCATGAACTGACTGTGTAGCAAATGAAGTGGAGCAAAGTAAGCAAAGCGACGTAAGAGCGAATAGACTGGATGTGGAGCGAATAATGAATAAAG</canonical_amplicon>
		<polymorphic_amplicon>CAAGCTGACCAAGATAGACAGCCAGGGTCCGCTGGACTTTCCGGAACTGCGAAAGTGCTGTAAAACAATGCAACACATGCCCAGCTGGACCMTAGTTGATCATGCAGTACCACGAGGAAACAAGGGACAACCAGAAGGACCAGGACAATCAGAGGGCCATGAACTGACTGTGTAGCAAATGAAGTGGAGCAAAGTAAGCAAAGCGACGTAAGAGCGAATAGACTGGATGTGGAGCGAATAATGAATAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35268</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>11374</contig_pos>
        <strand>-</strand>
        <context>AGCTGGACCM[A/C/T/G]AGTTGATCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C/T/G</alleles>
        <left_flank>GGAACTGCGAAAGTGCTGTAAAACAATGCAACACATGCCCAGCTGGACCT</left_flank>
        <right_flank>AGTTGATCATGCAGTACCACGAGGAAACAAGGGACAACCAGAAGGACCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAACGACGGACAGGCAGAGCACCGGGACAAGATGGACAATCGGGACAAGACGGAATACGTGGAGTTCCTCAAACAGGACCACCACATCCATCAGGACCCTCAAACAACAACCTTCGCAAAGATATCTTCTCCTGGTGAGTAGTTTCGCTGAATCGATTTCAGTTTTCAACCCAAAAAGTTTGTAGCTAGTAACTCTAGTCTTGGCGAACTGAGAATGACTTTTCCGTGCCAAGAGACGATACGTTACAAACAGTGAAGATGTTCTGGAGGAAGCGGTTTATATGCGGCTGGTGGAGGGGCGGGTGTAGGTGGCTGCGGCGGATGCCAATGTACTGTTCAAGCTTTTGAATGCCCAGCTGGAACACCAGGACCACCGGAAGCGGCTGGACCTGATGAAGAACCAGGACAAGCTGACCAAGATAGACAGCCAGGGTCCGCTGGACTTTCCGGAACTGCGAAAGTGCTGTAAAACAATGCAACACATGCCCAGCTGGACCTTAGTTGATCATGCAGTACCACGAGGAAACAAGGGACAACCAGAAGGACCAGGACAATCAGAGGGCCATGAACTGACTGTGTAGCAAATGAAGTGGAGCAAAGTAAGCAAAGCGACGTAAGAGCGAATAGACTGGATGTGGAGCGAATAATGAATAAAGCGAGGTGAGTATTTTTGTTTGACATTTGTTGAAAGAAAATCAGTATCTACTTCAATTAGTTTTCATTAAAAAGTTTCATAGCTCAAAAAATCATTTTCAACCTAACATCAATCTAAATGTAAGTGAAACAATTTGCAAATGATTAAATCCTTTGCAGGTCTTCACGATTCAAACGCTCTTGGTTTGGCAAACTGAGAAAGTCGCATTCGAAGGACTTTTCCGTGTCAACAGAGTACGGTACCGAGGGTGAAGATGAATATACTGTGAGAGGCGGAGGAGGGGATGGATACAAAAGTACTGCTCAAGCTTCTGGACGTTCAATTGGACCATAAAGACCACCGGG</canonical>
            <polymorphic>CGAACGACGGACAGGCAGAGCACCGGGACAAGATGGACAATCGGGACAAGACGGAATACGTGGAGTTCCTCAAACAGGACCACCACATCCATCAGGACCCTCAAACAACAACCTTCGCAAAGATATCTTCTCCTGGTGAGTAGTTTCGCTGAATCGATTTCAGTTTTCAACCCAAAAAGTTTGTAGCTAGTAACTCTAGTCTTGGCGAACTGAGAATGACTTTTCCGTGCCAAGAGACGATACGTTACAAACAGTGAAGATGTTCTGGAGGAAGCGGTTTATATGCGGCTGGTGGAGGGGCGGGTGTAGGTGGCTGCGGCGGATGCCAATGTACTGTTCAAGCTTTTGAATGCCCAGCTGGAACACCAGGACCACCGGAAGCGGCTGGACCTGATGAAGAACCAGGACAAGCTGACCAAGATAGACAGCCAGGGTCCGCTGGACTTTCCGGAACTGCGAAAGTGCTGTAAAACAATGCAACACATGCCCAGCTGGACCTMAGTTGATCATGCAGTACCACGAGGAAACAAGGGACAACCAGAAGGACCAGGACAATCAGAGGGCCATGAACTGACTGTGTAGCAAATGAAGTGGAGCAAAGTAAGCAAAGCGACGTAAGAGCGAATAGACTGGATGTGGAGCGAATAATGAATAAAGCGAGGTGAGTATTTTTGTTTGACATTTGTTGAAAGAAAATCAGTATCTACTTCAATTAGTTTTCATTAAAAAGTTTCATAGCTCAAAAAATCATTTTCAACCTAACATCAATCTAAATGTAAGTGAAACAATTTGCAAATGATTAAATCCTTTGCAGGTCTTCACGATTCAAACGCTCTTGGTTTGGCAAACTGAGAAAGTCGCATTCGAAGGACTTTTCCGTGTCAACAGAGTACGGTACCGAGGGTGAAGATGAATATACTGTGAGAGGCGGAGGAGGGGATGGATACAAAAGTACTGCTCAAGCTTCTGGACGTTCAATTGGACCATAAAGACCACCGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGCTGACCAAGATAGACAG</pcr_primer_p1>
		<pcr_primer_p2>CTTTATTCATTATTCGCTCCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAGCTGACCAAGATAGACAGCCAGGGTCCGCTGGACTTTCCGGAACTGCGAAAGTGCTGTAAAACAATGCAACACATGCCCAGCTGGACCTTAGTTGATCATGCAGTACCACGAGGAAACAAGGGACAACCAGAAGGACCAGGACAATCAGAGGGCCATGAACTGACTGTGTAGCAAATGAAGTGGAGCAAAGTAAGCAAAGCGACGTAAGAGCGAATAGACTGGATGTGGAGCGAATAATGAATAAAG</canonical_amplicon>
		<polymorphic_amplicon>CAAGCTGACCAAGATAGACAGCCAGGGTCCGCTGGACTTTCCGGAACTGCGAAAGTGCTGTAAAACAATGCAACACATGCCCAGCTGGACCTMAGTTGATCATGCAGTACCACGAGGAAACAAGGGACAACCAGAAGGACCAGGACAATCAGAGGGCCATGAACTGACTGTGTAGCAAATGAAGTGGAGCAAAGTAAGCAAAGCGACGTAAGAGCGAATAGACTGGATGTGGAGCGAATAATGAATAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35269</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>11568</contig_pos>
        <strand>-</strand>
        <context>TGTTGAAAGA[C/T/A/G]AATCAGTATC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T/A/G</alleles>
        <left_flank>AATAATGAATAAAGCGAGGTGAGTATTTTTGTTTGACATTTGTTGAAAGA</left_flank>
        <right_flank>AATCAGTATCTACTTCAATTAGTTTTCATTAAAAAGTTTCATAGCTCAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAGTCTTGGCGAACTGAGAATGACTTTTCCGTGCCAAGAGACGATACGTTACAAACAGTGAAGATGTTCTGGAGGAAGCGGTTTATATGCGGCTGGTGGAGGGGCGGGTGTAGGTGGCTGCGGCGGATGCCAATGTACTGTTCAAGCTTTTGAATGCCCAGCTGGAACACCAGGACCACCGGAAGCGGCTGGACCTGATGAAGAACCAGGACAAGCTGACCAAGATAGACAGCCAGGGTCCGCTGGACTTTCCGGAACTGCGAAAGTGCTGTAAAACAATGCAACACATGCCCAGCTGGACCTTAGTTGATCATGCAGTACCACGAGGAAACAAGGGACAACCAGAAGGACCAGGACAATCAGAGGGCCATGAACTGACTGTGTAGCAAATGAAGTGGAGCAAAGTAAGCAAAGCGACGTAAGAGCGAATAGACTGGATGTGGAGCGAATAATGAATAAAGCGAGGTGAGTATTTTTGTTTGACATTTGTTGAAAGAAAATCAGTATCTACTTCAATTAGTTTTCATTAAAAAGTTTCATAGCTCAAAAAATCATTTTCAACCTAACATCAATCTAAATGTAAGTGAAACAATTTGCAAATGATTAAATCCTTTGCAGGTCTTCACGATTCAAACGCTCTTGGTTTGGCAAACTGAGAAAGTCGCATTCGAAGGACTTTTCCGTGTCAACAGAGTACGGTACCGAGGGTGAAGATGAATATACTGTGAGAGGCGGAGGAGGGGATGGATACAAAAGTACTGCTCAAGCTTCTGGACGTTCAATTGGACCATAAAGACCACCGGGAGAAGCTGGGTCTGATGGAGGACCAGGACAAGCTGCACAAGAAGGACCACCAGGCTCTGCCGGACAAGCTGATTCCGGAAATGCTAAACAACAATTTATCCCATGCTCAGCTGGACCACCAGGACCACCAAGACCAGATGTATCCCCAGGAATGCCAGGACCAGACGGACAAGCTGGAGGTGCACCACCACCAG</canonical>
            <polymorphic>TCTAGTCTTGGCGAACTGAGAATGACTTTTCCGTGCCAAGAGACGATACGTTACAAACAGTGAAGATGTTCTGGAGGAAGCGGTTTATATGCGGCTGGTGGAGGGGCGGGTGTAGGTGGCTGCGGCGGATGCCAATGTACTGTTCAAGCTTTTGAATGCCCAGCTGGAACACCAGGACCACCGGAAGCGGCTGGACCTGATGAAGAACCAGGACAAGCTGACCAAGATAGACAGCCAGGGTCCGCTGGACTTTCCGGAACTGCGAAAGTGCTGTAAAACAATGCAACACATGCCCAGCTGGACCTTAGTTGATCATGCAGTACCACGAGGAAACAAGGGACAACCAGAAGGACCAGGACAATCAGAGGGCCATGAACTGACTGTGTAGCAAATGAAGTGGAGCAAAGTAAGCAAAGCGACGTAAGAGCGAATAGACTGGATGTGGAGCGAATAATGAATAAAGCGAGGTGAGTATTTTTGTTTGACATTTGTTGAAAGAYAATCAGTATCTACTTCAATTAGTTTTCATTAAAAAGTTTCATAGCTCAAAAAATCATTTTCAACCTAACATCAATCTAAATGTAAGTGAAACAATTTGCAAATGATTAAATCCTTTGCAGGTCTTCACGATTCAAACGCTCTTGGTTTGGCAAACTGAGAAAGTCGCATTCGAAGGACTTTTCCGTGTCAACAGAGTACGGTACCGAGGGTGAAGATGAATATACTGTGAGAGGCGGAGGAGGGGATGGATACAAAAGTACTGCTCAAGCTTCTGGACGTTCAATTGGACCATAAAGACCACCGGGAGAAGCTGGGTCTGATGGAGGACCAGGACAAGCTGCACAAGAAGGACCACCAGGCTCTGCCGGACAAGCTGATTCCGGAAATGCTAAACAACAATTTATCCCATGCTCAGCTGGACCACCAGGACCACCAAGACCAGATGTATCCCCAGGAATGCCAGGACCAGACGGACAAGCTGGAGGTGCACCACCACCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATAATGAATAAAGCGAGGTG</pcr_primer_p1>
		<pcr_primer_p2>TACTCTGTTGACACGGAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATAATGAATAAAGCGAGGTGAGTATTTTTGTTTGACATTTGTTGAAAGAAAATCAGTATCTACTTCAATTAGTTTTCATTAAAAAGTTTCATAGCTCAAAAAATCATTTTCAACCTAACATCAATCTAAATGTAAGTGAAACAATTTGCAAATGATTAAATCCTTTGCAGGTCTTCACGATTCAAACGCTCTTGGTTTGGCAAACTGAGAAAGTCGCATTCGAAGGACTTTTCCGTGTCAACAGAGTA</canonical_amplicon>
		<polymorphic_amplicon>GAATAATGAATAAAGCGAGGTGAGTATTTTTGTTTGACATTTGTTGAAAGAYAATCAGTATCTACTTCAATTAGTTTTCATTAAAAAGTTTCATAGCTCAAAAAATCATTTTCAACCTAACATCAATCTAAATGTAAGTGAAACAATTTGCAAATGATTAAATCCTTTGCAGGTCTTCACGATTCAAACGCTCTTGGTTTGGCAAACTGAGAAAGTCGCATTCGAAGGACTTTTCCGTGTCAACAGAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35270</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>11590</contig_pos>
        <strand></strand>
        <context>ACTTCAATTA[G/A]TTTTCATTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTATTTTTGTTTGACATTTGTTGAAAGAAAATCAGTATCTACTTCAATTA</left_flank>
        <right_flank>TTTTCATTAAAAAGTTTCATAGCTCAAAAAATCATTTTCAACCTAACATC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACTTTTCCGTGCCAAGAGACGATACGTTACAAACAGTGAAGATGTTCTGGAGGAAGCGGTTTATATGCGGCTGGTGGAGGGGCGGGTGTAGGTGGCTGCGGCGGATGCCAATGTACTGTTCAAGCTTTTGAATGCCCAGCTGGAACACCAGGACCACCGGAAGCGGCTGGACCTGATGAAGAACCAGGACAAGCTGACCAAGATAGACAGCCAGGGTCCGCTGGACTTTCCGGAACTGCGAAAGTGCTGTAAAACAATGCAACACATGCCCAGCTGGACCTTAGTTGATCATGCAGTACCACGAGGAAACAAGGGACAACCAGAAGGACCAGGACAATCAGAGGGCCATGAACTGACTGTGTAGCAAATGAAGTGGAGCAAAGTAAGCAAAGCGACGTAAGAGCGAATAGACTGGATGTGGAGCGAATAATGAATAAAGCGAGGTGAGTATTTTTGTTTGACATTTGTTGAAAGAAAATCAGTATCTACTTCAATTAGTTTTCATTAAAAAGTTTCATAGCTCAAAAAATCATTTTCAACCTAACATCAATCTAAATGTAAGTGAAACAATTTGCAAATGATTAAATCCTTTGCAGGTCTTCACGATTCAAACGCTCTTGGTTTGGCAAACTGAGAAAGTCGCATTCGAAGGACTTTTCCGTGTCAACAGAGTACGGTACCGAGGGTGAAGATGAATATACTGTGAGAGGCGGAGGAGGGGATGGATACAAAAGTACTGCTCAAGCTTCTGGACGTTCAATTGGACCATAAAGACCACCGGGAGAAGCTGGGTCTGATGGAGGACCAGGACAAGCTGCACAAGAAGGACCACCAGGCTCTGCCGGACAAGCTGATTCCGGAAATGCTAAACAACAATTTATCCCATGCTCAGCTGGACCACCAGGACCACCAAGACCAGATGTATCCCCAGGAATGCCAGGACCAGACGGACAAGCTGGAGGTGCACCACCACCAGAACCGCCTGGACCACCAGTAGC</canonical>
            <polymorphic>TGACTTTTCCGTGCCAAGAGACGATACGTTACAAACAGTGAAGATGTTCTGGAGGAAGCGGTTTATATGCGGCTGGTGGAGGGGCGGGTGTAGGTGGCTGCGGCGGATGCCAATGTACTGTTCAAGCTTTTGAATGCCCAGCTGGAACACCAGGACCACCGGAAGCGGCTGGACCTGATGAAGAACCAGGACAAGCTGACCAAGATAGACAGCCAGGGTCCGCTGGACTTTCCGGAACTGCGAAAGTGCTGTAAAACAATGCAACACATGCCCAGCTGGACCTTAGTTGATCATGCAGTACCACGAGGAAACAAGGGACAACCAGAAGGACCAGGACAATCAGAGGGCCATGAACTGACTGTGTAGCAAATGAAGTGGAGCAAAGTAAGCAAAGCGACGTAAGAGCGAATAGACTGGATGTGGAGCGAATAATGAATAAAGCGAGGTGAGTATTTTTGTTTGACATTTGTTGAAAGAAAATCAGTATCTACTTCAATTARTTTTCATTAAAAAGTTTCATAGCTCAAAAAATCATTTTCAACCTAACATCAATCTAAATGTAAGTGAAACAATTTGCAAATGATTAAATCCTTTGCAGGTCTTCACGATTCAAACGCTCTTGGTTTGGCAAACTGAGAAAGTCGCATTCGAAGGACTTTTCCGTGTCAACAGAGTACGGTACCGAGGGTGAAGATGAATATACTGTGAGAGGCGGAGGAGGGGATGGATACAAAAGTACTGCTCAAGCTTCTGGACGTTCAATTGGACCATAAAGACCACCGGGAGAAGCTGGGTCTGATGGAGGACCAGGACAAGCTGCACAAGAAGGACCACCAGGCTCTGCCGGACAAGCTGATTCCGGAAATGCTAAACAACAATTTATCCCATGCTCAGCTGGACCACCAGGACCACCAAGACCAGATGTATCCCCAGGAATGCCAGGACCAGACGGACAAGCTGGAGGTGCACCACCACCAGAACCGCCTGGACCACCAGTAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATGAATAAAGCGAGGTGAGTA</pcr_primer_p1>
		<pcr_primer_p2>GTACTCTGTTGACACGGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TAATGAATAAAGCGAGGTGAGTATTTTTGTTTGACATTTGTTGAAAGAAAATCAGTATCTACTTCAATTAGTTTTCATTAAAAAGTTTCATAGCTCAAAAAATCATTTTCAACCTAACATCAATCTAAATGTAAGTGAAACAATTTGCAAATGATTAAATCCTTTGCAGGTCTTCACGATTCAAACGCTCTTGGTTTGGCAAACTGAGAAAGTCGCATTCGAAGGACTTTTCCGTGTCAACAGAGTAC</canonical_amplicon>
		<polymorphic_amplicon>TAATGAATAAAGCGAGGTGAGTATTTTTGTTTGACATTTGTTGAAAGAAAATCAGTATCTACTTCAATTARTTTTCATTAAAAAGTTTCATAGCTCAAAAAATCATTTTCAACCTAACATCAATCTAAATGTAAGTGAAACAATTTGCAAATGATTAAATCCTTTGCAGGTCTTCACGATTCAAACGCTCTTGGTTTGGCAAACTGAGAAAGTCGCATTCGAAGGACTTTTCCGTGTCAACAGAGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35271</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>22331</contig_pos>
        <strand>+</strand>
        <context>GTTTCTCACA[A/G]CTTTATCGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTTTCTAGTCATTTCCTTCTATGTCTTCACCGTGGACATGTTTCTCACA</left_flank>
        <right_flank>CTTTATCGGTTGCCAATTGCACCATCTTAAACTTCCAACCATTCATAGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCAGGCTTCTTATTATGAAGAGAATATTACTGAAAGTTTCAGGGTCGAGAAAATATTTATATGATCCTAACTCCTTACCTGACAGTTGTCACAGGAGTCAATGTCTACATGAACATCTCCTCGTATAGAAAAATGATCAAATTGGCTAAGTAAGTGGTGAACCTACCTTCCAAAACACAGGACTATGAACTAGAATTCTAGTGGCATATAGTTCTGCACTTCCTCCTTTTTCTTCTTTTTCAGTTTTCATAAGTCTTTTTTATATTTGTGAAAGACGTCAACCCCACTAATTAGCACCCCGGGACAGAAGTCCAAGTAAAATCTACTTTCTTTACTTTTGATTAGTAAGCGACATTTCTGGAGTCATCAAAACGTTAACATTTGATCTGACTACCGTAATTATGATGCAGTAACTTTTCAGCTCAGGATTCTCAGTACCCGATAAAAGGTTTCTAGTCATTTCCTTCTATGTCTTCACCGTGGACATGTTTCTCACAACTTTATCGGTTGCCAATTGCACCATCTTAAACTTCCAACCATTCATAGACAATTTGACTGTGCTCAGCTGGATAGCGTTTTGCACACCATTTGCCAGCGATGCTCTCACTTTCTGTTCTCCTCTTCTCACTTTCACAATGTGTCATTCGGTAAGCGTGGCTGCTAGTAATTTAGACAAGAAACGATTTCAGCTCCGCGTGAAATTTATCGAGTGCCTGCCGTCATGTCTCAGGCAAGTGGGGTATCGATTTTGTGTGAGAACAAGTGATTCCTACACCGTGTCTTCAGTCAGTCACCAAGTGCAAAACTAAATTTCTCTCTTGCTCTTTCTGTTTTTCAATGTTCTTTTGTCTAAATTTTTTTTGTAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGATCATCTAACATT</canonical>
            <polymorphic>ATCCAGGCTTCTTATTATGAAGAGAATATTACTGAAAGTTTCAGGGTCGAGAAAATATTTATATGATCCTAACTCCTTACCTGACAGTTGTCACAGGAGTCAATGTCTACATGAACATCTCCTCGTATAGAAAAATGATCAAATTGGCTAAGTAAGTGGTGAACCTACCTTCCAAAACACAGGACTATGAACTAGAATTCTAGTGGCATATAGTTCTGCACTTCCTCCTTTTTCTTCTTTTTCAGTTTTCATAAGTCTTTTTTATATTTGTGAAAGACGTCAACCCCACTAATTAGCACCCCGGGACAGAAGTCCAAGTAAAATCTACTTTCTTTACTTTTGATTAGTAAGCGACATTTCTGGAGTCATCAAAACGTTAACATTTGATCTGACTACCGTAATTATGATGCAGTAACTTTTCAGCTCAGGATTCTCAGTACCCGATAAAAGGTTTCTAGTCATTTCCTTCTATGTCTTCACCGTGGACATGTTTCTCACARCTTTATCGGTTGCCAATTGCACCATCTTAAACTTCCAACCATTCATAGACAATTTGACTGTGCTCAGCTGGATAGCGTTTTGCACACCATTTGCCAGCGATGCTCTCACTTTCTGTTCTCCTCTTCTCACTTTCACAATGTGTCATTCGGTAAGCGTGGCTGCTAGTAATTTAGACAAGAAACGATTTCAGCTCCGCGTGAAATTTATCGAGTGCCTGCCGTCATGTCTCAGGCAAGTGGGGTATCGATTTTGTGTGAGAACAAGTGATTCCTACACCGTGTCTTCAGTCAGTCACCAAGTGCAAAACTAAATTTCTCTCTTGCTCTTTCTGTTTTTCAATGTTCTTTTGTCTAAATTTTTTTTGTAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGATCATCTAACATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACATTTGATCTGACTACCGTAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAGAGGAGAACAGAAAGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACATTTGATCTGACTACCGTAATTATGATGCAGTAACTTTTCAGCTCAGGATTCTCAGTACCCGATAAAAGGTTTCTAGTCATTTCCTTCTATGTCTTCACCGTGGACATGTTTCTCACAACTTTATCGGTTGCCAATTGCACCATCTTAAACTTCCAACCATTCATAGACAATTTGACTGTGCTCAGCTGGATAGCGTTTTGCACACCATTTGCCAGCGATGCTCTCACTTTCTGTTCTCCTCTTCT</canonical_amplicon>
		<polymorphic_amplicon>AACATTTGATCTGACTACCGTAATTATGATGCAGTAACTTTTCAGCTCAGGATTCTCAGTACCCGATAAAAGGTTTCTAGTCATTTCCTTCTATGTCTTCACCGTGGACATGTTTCTCACARCTTTATCGGTTGCCAATTGCACCATCTTAAACTTCCAACCATTCATAGACAATTTGACTGTGCTCAGCTGGATAGCGTTTTGCACACCATTTGCCAGCGATGCTCTCACTTTCTGTTCTCCTCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35272</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>22434</contig_pos>
        <strand>+</strand>
        <context>GCCAGCGATG[C/T]TCTCACTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGACTGTGCTCAGCTGGATAGCGTTTTGCACACCATTTGCCAGCGATG</left_flank>
        <right_flank>TCTCACTTTCTGTTCTCCTCTTCTCACTTTCACAATGTGTCATTCGGTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTCTACATGAACATCTCCTCGTATAGAAAAATGATCAAATTGGCTAAGTAAGTGGTGAACCTACCTTCCAAAACACAGGACTATGAACTAGAATTCTAGTGGCATATAGTTCTGCACTTCCTCCTTTTTCTTCTTTTTCAGTTTTCATAAGTCTTTTTTATATTTGTGAAAGACGTCAACCCCACTAATTAGCACCCCGGGACAGAAGTCCAAGTAAAATCTACTTTCTTTACTTTTGATTAGTAAGCGACATTTCTGGAGTCATCAAAACGTTAACATTTGATCTGACTACCGTAATTATGATGCAGTAACTTTTCAGCTCAGGATTCTCAGTACCCGATAAAAGGTTTCTAGTCATTTCCTTCTATGTCTTCACCGTGGACATGTTTCTCACAACTTTATCGGTTGCCAATTGCACCATCTTAAACTTCCAACCATTCATAGACAATTTGACTGTGCTCAGCTGGATAGCGTTTTGCACACCATTTGCCAGCGATGCTCTCACTTTCTGTTCTCCTCTTCTCACTTTCACAATGTGTCATTCGGTAAGCGTGGCTGCTAGTAATTTAGACAAGAAACGATTTCAGCTCCGCGTGAAATTTATCGAGTGCCTGCCGTCATGTCTCAGGCAAGTGGGGTATCGATTTTGTGTGAGAACAAGTGATTCCTACACCGTGTCTTCAGTCAGTCACCAAGTGCAAAACTAAATTTCTCTCTTGCTCTTTCTGTTTTTCAATGTTCTTTTGTCTAAATTTTTTTTGTAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGTGATATTCGAAATGACCAGAAAGCCAAAGAACGTATATAAAACGATGAAAATCAATTCT</canonical>
            <polymorphic>TGTCTACATGAACATCTCCTCGTATAGAAAAATGATCAAATTGGCTAAGTAAGTGGTGAACCTACCTTCCAAAACACAGGACTATGAACTAGAATTCTAGTGGCATATAGTTCTGCACTTCCTCCTTTTTCTTCTTTTTCAGTTTTCATAAGTCTTTTTTATATTTGTGAAAGACGTCAACCCCACTAATTAGCACCCCGGGACAGAAGTCCAAGTAAAATCTACTTTCTTTACTTTTGATTAGTAAGCGACATTTCTGGAGTCATCAAAACGTTAACATTTGATCTGACTACCGTAATTATGATGCAGTAACTTTTCAGCTCAGGATTCTCAGTACCCGATAAAAGGTTTCTAGTCATTTCCTTCTATGTCTTCACCGTGGACATGTTTCTCACAACTTTATCGGTTGCCAATTGCACCATCTTAAACTTCCAACCATTCATAGACAATTTGACTGTGCTCAGCTGGATAGCGTTTTGCACACCATTTGCCAGCGATGYTCTCACTTTCTGTTCTCCTCTTCTCACTTTCACAATGTGTCATTCGGTAAGCGTGGCTGCTAGTAATTTAGACAAGAAACGATTTCAGCTCCGCGTGAAATTTATCGAGTGCCTGCCGTCATGTCTCAGGCAAGTGGGGTATCGATTTTGTGTGAGAACAAGTGATTCCTACACCGTGTCTTCAGTCAGTCACCAAGTGCAAAACTAAATTTCTCTCTTGCTCTTTCTGTTTTTCAATGTTCTTTTGTCTAAATTTTTTTTGTAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGTGATATTCGAAATGACCAGAAAGCCAAAGAACGTATATAAAACGATGAAAATCAATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGATAAAAGGTTTCTAGTCATT</pcr_primer_p1>
		<pcr_primer_p2>CTGAAATCGTTTCTTGTCTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCGATAAAAGGTTTCTAGTCATTTCCTTCTATGTCTTCACCGTGGACATGTTTCTCACAACTTTATCGGTTGCCAATTGCACCATCTTAAACTTCCAACCATTCATAGACAATTTGACTGTGCTCAGCTGGATAGCGTTTTGCACACCATTTGCCAGCGATGCTCTCACTTTCTGTTCTCCTCTTCTCACTTTCACAATGTGTCATTCGGTAAGCGTGGCTGCTAGTAATTTAGACAAGAAACGATTTCAG</canonical_amplicon>
		<polymorphic_amplicon>CCGATAAAAGGTTTCTAGTCATTTCCTTCTATGTCTTCACCGTGGACATGTTTCTCACAACTTTATCGGTTGCCAATTGCACCATCTTAAACTTCCAACCATTCATAGACAATTTGACTGTGCTCAGCTGGATAGCGTTTTGCACACCATTTGCCAGCGATGYTCTCACTTTCTGTTCTCCTCTTCTCACTTTCACAATGTGTCATTCGGTAAGCGTGGCTGCTAGTAATTTAGACAAGAAACGATTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35273</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>22584</contig_pos>
        <strand>+</strand>
        <context>TATCGATTTT[G/T]TGTGAGAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTATCGAGTGCCTGCCGTCATGTCTCAGGCAAGTGGGGTATCGATTTT</left_flank>
        <right_flank>TGTGAGAACAAGTGATTCCTACACCGTGTCTTCAGTCAGTCACCAAGTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTCTTTTTTATATTTGTGAAAGACGTCAACCCCACTAATTAGCACCCCGGGACAGAAGTCCAAGTAAAATCTACTTTCTTTACTTTTGATTAGTAAGCGACATTTCTGGAGTCATCAAAACGTTAACATTTGATCTGACTACCGTAATTATGATGCAGTAACTTTTCAGCTCAGGATTCTCAGTACCCGATAAAAGGTTTCTAGTCATTTCCTTCTATGTCTTCACCGTGGACATGTTTCTCACAACTTTATCGGTTGCCAATTGCACCATCTTAAACTTCCAACCATTCATAGACAATTTGACTGTGCTCAGCTGGATAGCGTTTTGCACACCATTTGCCAGCGATGCTCTCACTTTCTGTTCTCCTCTTCTCACTTTCACAATGTGTCATTCGGTAAGCGTGGCTGCTAGTAATTTAGACAAGAAACGATTTCAGCTCCGCGTGAAATTTATCGAGTGCCTGCCGTCATGTCTCAGGCAAGTGGGGTATCGATTTTGTGTGAGAACAAGTGATTCCTACACCGTGTCTTCAGTCAGTCACCAAGTGCAAAACTAAATTTCTCTCTTGCTCTTTCTGTTTTTCAATGTTCTTTTGTCTAAATTTTTTTTGTAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGTGATATTCGAAATGACCAGAAAGCCAAAGAACGTATATAAAACGATGAAAATCAATTCTGTCTAAAGCAGCATGTTGGCTGAAAATGTTGGAATGAGCCATGTTCCTCGGAATCCGGACAAAAATACATTTTTGAACGGCTGACATGAGAAAAAGCGTCACAGATTCACCCTTTATATTTAAATTCTAATATTGAAAAAGATAAACTTA</canonical>
            <polymorphic>AGTCTTTTTTATATTTGTGAAAGACGTCAACCCCACTAATTAGCACCCCGGGACAGAAGTCCAAGTAAAATCTACTTTCTTTACTTTTGATTAGTAAGCGACATTTCTGGAGTCATCAAAACGTTAACATTTGATCTGACTACCGTAATTATGATGCAGTAACTTTTCAGCTCAGGATTCTCAGTACCCGATAAAAGGTTTCTAGTCATTTCCTTCTATGTCTTCACCGTGGACATGTTTCTCACAACTTTATCGGTTGCCAATTGCACCATCTTAAACTTCCAACCATTCATAGACAATTTGACTGTGCTCAGCTGGATAGCGTTTTGCACACCATTTGCCAGCGATGCTCTCACTTTCTGTTCTCCTCTTCTCACTTTCACAATGTGTCATTCGGTAAGCGTGGCTGCTAGTAATTTAGACAAGAAACGATTTCAGCTCCGCGTGAAATTTATCGAGTGCCTGCCGTCATGTCTCAGGCAAGTGGGGTATCGATTTTKTGTGAGAACAAGTGATTCCTACACCGTGTCTTCAGTCAGTCACCAAGTGCAAAACTAAATTTCTCTCTTGCTCTTTCTGTTTTTCAATGTTCTTTTGTCTAAATTTTTTTTGTAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGTGATATTCGAAATGACCAGAAAGCCAAAGAACGTATATAAAACGATGAAAATCAATTCTGTCTAAAGCAGCATGTTGGCTGAAAATGTTGGAATGAGCCATGTTCCTCGGAATCCGGACAAAAATACATTTTTGAACGGCTGACATGAGAAAAAGCGTCACAGATTCACCCTTTATATTTAAATTCTAATATTGAAAAAGATAAACTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>181 158 100 97 45 42 41 41 25 24 22 22 21 19 16 16 16 14 14 13 10 10 9 8 7 7 6 5 5 2 2 2</canonical_bands>
                <polymorphic_bands>181 158 100 97 45 42 41 41 25 24 22 22 21 19 18 16 16 14 14 13 10 10 9 8 7 7 6 5 5 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCACTTTCTGTTCTCCTCTT</pcr_primer_p1>
		<pcr_primer_p2>AGACAAAAGAACATTGAAAAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTCACTTTCTGTTCTCCTCTTCTCACTTTCACAATGTGTCATTCGGTAAGCGTGGCTGCTAGTAATTTAGACAAGAAACGATTTCAGCTCCGCGTGAAATTTATCGAGTGCCTGCCGTCATGTCTCAGGCAAGTGGGGTATCGATTTTGTGTGAGAACAAGTGATTCCTACACCGTGTCTTCAGTCAGTCACCAAGTGCAAAACTAAATTTCTCTCTTGCTCTTTCTGTTTTTCAATGTTCTTTTGTCT</canonical_amplicon>
		<polymorphic_amplicon>TCTCACTTTCTGTTCTCCTCTTCTCACTTTCACAATGTGTCATTCGGTAAGCGTGGCTGCTAGTAATTTAGACAAGAAACGATTTCAGCTCCGCGTGAAATTTATCGAGTGCCTGCCGTCATGTCTCAGGCAAGTGGGGTATCGATTTTKTGTGAGAACAAGTGATTCCTACACCGTGTCTTCAGTCAGTCACCAAGTGCAAAACTAAATTTCTCTCTTGCTCTTTCTGTTTTTCAATGTTCTTTTGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35274</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>22688</contig_pos>
        <strand>+</strand>
        <context>TTTGTCTAAA[G/T]TTTTTTTGRA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTAAATTTCTCTCTTGCTCTTTCTGTTTTTCAATGTTCTTTTGTCTAAA</left_flank>
        <right_flank>TTTTTTTGTAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGGAGTCATCAAAACGTTAACATTTGATCTGACTACCGTAATTATGATGCAGTAACTTTTCAGCTCAGGATTCTCAGTACCCGATAAAAGGTTTCTAGTCATTTCCTTCTATGTCTTCACCGTGGACATGTTTCTCACAACTTTATCGGTTGCCAATTGCACCATCTTAAACTTCCAACCATTCATAGACAATTTGACTGTGCTCAGCTGGATAGCGTTTTGCACACCATTTGCCAGCGATGCTCTCACTTTCTGTTCTCCTCTTCTCACTTTCACAATGTGTCATTCGGTAAGCGTGGCTGCTAGTAATTTAGACAAGAAACGATTTCAGCTCCGCGTGAAATTTATCGAGTGCCTGCCGTCATGTCTCAGGCAAGTGGGGTATCGATTTTGTGTGAGAACAAGTGATTCCTACACCGTGTCTTCAGTCAGTCACCAAGTGCAAAACTAAATTTCTCTCTTGCTCTTTCTGTTTTTCAATGTTCTTTTGTCTAAATTTTTTTTGTAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGTGATATTCGAAATGACCAGAAAGCCAAAGAACGTATATAAAACGATGAAAATCAATTCTGTCTAAAGCAGCATGTTGGCTGAAAATGTTGGAATGAGCCATGTTCCTCGGAATCCGGACAAAAATACATTTTTGAACGGCTGACATGAGAAAAAGCGTCACAGATTCACCCTTTATATTTAAATTCTAATATTGAAAAAGATAAACTTAAAATGAATAGAAAAATATGTTTTTAATAATGTTCACAAGAGAACATCGGTTCCAGAAAAAGAAAGATGATTGGACAAGAAGGGTACTAAATTAGTGATTCGAGG</canonical>
            <polymorphic>TTCTGGAGTCATCAAAACGTTAACATTTGATCTGACTACCGTAATTATGATGCAGTAACTTTTCAGCTCAGGATTCTCAGTACCCGATAAAAGGTTTCTAGTCATTTCCTTCTATGTCTTCACCGTGGACATGTTTCTCACAACTTTATCGGTTGCCAATTGCACCATCTTAAACTTCCAACCATTCATAGACAATTTGACTGTGCTCAGCTGGATAGCGTTTTGCACACCATTTGCCAGCGATGCTCTCACTTTCTGTTCTCCTCTTCTCACTTTCACAATGTGTCATTCGGTAAGCGTGGCTGCTAGTAATTTAGACAAGAAACGATTTCAGCTCCGCGTGAAATTTATCGAGTGCCTGCCGTCATGTCTCAGGCAAGTGGGGTATCGATTTTGTGTGAGAACAAGTGATTCCTACACCGTGTCTTCAGTCAGTCACCAAGTGCAAAACTAAATTTCTCTCTTGCTCTTTCTGTTTTTCAATGTTCTTTTGTCTAAAKTTTTTTTGTAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGTGATATTCGAAATGACCAGAAAGCCAAAGAACGTATATAAAACGATGAAAATCAATTCTGTCTAAAGCAGCATGTTGGCTGAAAATGTTGGAATGAGCCATGTTCCTCGGAATCCGGACAAAAATACATTTTTGAACGGCTGACATGAGAAAAAGCGTCACAGATTCACCCTTTATATTTAAATTCTAATATTGAAAAAGATAAACTTAAAATGAATAGAAAAATATGTTTTTAATAATGTTCACAAGAGAACATCGGTTCCAGAAAAAGAAAGATGATTGGACAAGAAGGGTACTAAATTAGTGATTCGAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>344 317 132 109 54 44</canonical_bands>
                <polymorphic_bands>344 317 132 109 98</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>128 125 117 116 115 109 64 54 44 42 36 34 16</canonical_bands>
                <polymorphic_bands>128 125 117 116 115 109 98 64 42 36 34 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAGTGCAAAACTAAATTTCT</pcr_primer_p1>
		<pcr_primer_p2>ACACGAATCATTTCGAATATCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAAGTGCAAAACTAAATTTCTCTCTTGCTCTTTCTGTTTTTCAATGTTCTTTTGTCTAAATTTTTTTTGTAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGT</canonical_amplicon>
		<polymorphic_amplicon>CCAAGTGCAAAACTAAATTTCTCTCTTGCTCTTTCTGTTTTTCAATGTTCTTTTGTCTAAAKTTTTTTTGTAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35275</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>22697</contig_pos>
        <strand>+</strand>
        <context>AKTTTTTTTG[A/G]AAACCTCTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCTCTTGCTCTTTCTGTTTTTCAATGTTCTTTTGTCTAAATTTTTTTTG</left_flank>
        <right_flank>AAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCAAAACGTTAACATTTGATCTGACTACCGTAATTATGATGCAGTAACTTTTCAGCTCAGGATTCTCAGTACCCGATAAAAGGTTTCTAGTCATTTCCTTCTATGTCTTCACCGTGGACATGTTTCTCACAACTTTATCGGTTGCCAATTGCACCATCTTAAACTTCCAACCATTCATAGACAATTTGACTGTGCTCAGCTGGATAGCGTTTTGCACACCATTTGCCAGCGATGCTCTCACTTTCTGTTCTCCTCTTCTCACTTTCACAATGTGTCATTCGGTAAGCGTGGCTGCTAGTAATTTAGACAAGAAACGATTTCAGCTCCGCGTGAAATTTATCGAGTGCCTGCCGTCATGTCTCAGGCAAGTGGGGTATCGATTTTGTGTGAGAACAAGTGATTCCTACACCGTGTCTTCAGTCAGTCACCAAGTGCAAAACTAAATTTCTCTCTTGCTCTTTCTGTTTTTCAATGTTCTTTTGTCTAAATTTTTTTTGTAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGTGATATTCGAAATGACCAGAAAGCCAAAGAACGTATATAAAACGATGAAAATCAATTCTGTCTAAAGCAGCATGTTGGCTGAAAATGTTGGAATGAGCCATGTTCCTCGGAATCCGGACAAAAATACATTTTTGAACGGCTGACATGAGAAAAAGCGTCACAGATTCACCCTTTATATTTAAATTCTAATATTGAAAAAGATAAACTTAAAATGAATAGAAAAATATGTTTTTAATAATGTTCACAAGAGAACATCGGTTCCAGAAAAAGAAAGATGATTGGACAAGAAGGGTACTAAATTAGTGATTCGAGGATACAAAAT</canonical>
            <polymorphic>CATCAAAACGTTAACATTTGATCTGACTACCGTAATTATGATGCAGTAACTTTTCAGCTCAGGATTCTCAGTACCCGATAAAAGGTTTCTAGTCATTTCCTTCTATGTCTTCACCGTGGACATGTTTCTCACAACTTTATCGGTTGCCAATTGCACCATCTTAAACTTCCAACCATTCATAGACAATTTGACTGTGCTCAGCTGGATAGCGTTTTGCACACCATTTGCCAGCGATGCTCTCACTTTCTGTTCTCCTCTTCTCACTTTCACAATGTGTCATTCGGTAAGCGTGGCTGCTAGTAATTTAGACAAGAAACGATTTCAGCTCCGCGTGAAATTTATCGAGTGCCTGCCGTCATGTCTCAGGCAAGTGGGGTATCGATTTTGTGTGAGAACAAGTGATTCCTACACCGTGTCTTCAGTCAGTCACCAAGTGCAAAACTAAATTTCTCTCTTGCTCTTTCTGTTTTTCAATGTTCTTTTGTCTAAATTTTTTTTGRAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGTGATATTCGAAATGACCAGAAAGCCAAAGAACGTATATAAAACGATGAAAATCAATTCTGTCTAAAGCAGCATGTTGGCTGAAAATGTTGGAATGAGCCATGTTCCTCGGAATCCGGACAAAAATACATTTTTGAACGGCTGACATGAGAAAAAGCGTCACAGATTCACCCTTTATATTTAAATTCTAATATTGAAAAAGATAAACTTAAAATGAATAGAAAAATATGTTTTTAATAATGTTCACAAGAGAACATCGGTTCCAGAAAAAGAAAGATGATTGGACAAGAAGGGTACTAAATTAGTGATTCGAGGATACAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>419 383 106 80 12</canonical_bands>
                <polymorphic_bands>802 106 80 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAGTGCAAAACTAAATTTCT</pcr_primer_p1>
		<pcr_primer_p2>ACACGAATCATTTCGAATATCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAAGTGCAAAACTAAATTTCTCTCTTGCTCTTTCTGTTTTTCAATGTTCTTTTGTCTAAATTTTTTTTGTAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGT</canonical_amplicon>
		<polymorphic_amplicon>CCAAGTGCAAAACTAAATTTCTCTCTTGCTCTTTCTGTTTTTCAATGTTCTTTTGTCTAAATTTTTTTTGRAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35276</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>22799</contig_pos>
        <strand>+</strand>
        <context>ACATTTTGAA[A/T]CAAAAATTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAA</left_flank>
        <right_flank>CAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGT</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATGTCTTCACCGTGGACATGTTTCTCACAACTTTATCGGTTGCCAATTGCACCATCTTAAACTTCCAACCATTCATAGACAATTTGACTGTGCTCAGCTGGATAGCGTTTTGCACACCATTTGCCAGCGATGCTCTCACTTTCTGTTCTCCTCTTCTCACTTTCACAATGTGTCATTCGGTAAGCGTGGCTGCTAGTAATTTAGACAAGAAACGATTTCAGCTCCGCGTGAAATTTATCGAGTGCCTGCCGTCATGTCTCAGGCAAGTGGGGTATCGATTTTGTGTGAGAACAAGTGATTCCTACACCGTGTCTTCAGTCAGTCACCAAGTGCAAAACTAAATTTCTCTCTTGCTCTTTCTGTTTTTCAATGTTCTTTTGTCTAAATTTTTTTTGTAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGTGATATTCGAAATGACCAGAAAGCCAAAGAACGTATATAAAACGATGAAAATCAATTCTGTCTAAAGCAGCATGTTGGCTGAAAATGTTGGAATGAGCCATGTTCCTCGGAATCCGGACAAAAATACATTTTTGAACGGCTGACATGAGAAAAAGCGTCACAGATTCACCCTTTATATTTAAATTCTAATATTGAAAAAGATAAACTTAAAATGAATAGAAAAATATGTTTTTAATAATGTTCACAAGAGAACATCGGTTCCAGAAAAAGAAAGATGATTGGACAAGAAGGGTACTAAATTAGTGATTCGAGGATACAAAATGAAAGCTGCACAACATTTGAAAACAAATTTTCAATTCTGGGAAAAGAAATATACTACTTGCTCAAAAATTTTGTACCCCCGAATCATACTTCTTCATAAGAA</canonical>
            <polymorphic>CTATGTCTTCACCGTGGACATGTTTCTCACAACTTTATCGGTTGCCAATTGCACCATCTTAAACTTCCAACCATTCATAGACAATTTGACTGTGCTCAGCTGGATAGCGTTTTGCACACCATTTGCCAGCGATGCTCTCACTTTCTGTTCTCCTCTTCTCACTTTCACAATGTGTCATTCGGTAAGCGTGGCTGCTAGTAATTTAGACAAGAAACGATTTCAGCTCCGCGTGAAATTTATCGAGTGCCTGCCGTCATGTCTCAGGCAAGTGGGGTATCGATTTTGTGTGAGAACAAGTGATTCCTACACCGTGTCTTCAGTCAGTCACCAAGTGCAAAACTAAATTTCTCTCTTGCTCTTTCTGTTTTTCAATGTTCTTTTGTCTAAATTTTTTTTGTAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAWCAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGTGATATTCGAAATGACCAGAAAGCCAAAGAACGTATATAAAACGATGAAAATCAATTCTGTCTAAAGCAGCATGTTGGCTGAAAATGTTGGAATGAGCCATGTTCCTCGGAATCCGGACAAAAATACATTTTTGAACGGCTGACATGAGAAAAAGCGTCACAGATTCACCCTTTATATTTAAATTCTAATATTGAAAAAGATAAACTTAAAATGAATAGAAAAATATGTTTTTAATAATGTTCACAAGAGAACATCGGTTCCAGAAAAAGAAAGATGATTGGACAAGAAGGGTACTAAATTAGTGATTCGAGGATACAAAATGAAAGCTGCACAACATTTGAAAACAAATTTTCAATTCTGGGAAAAGAAATATACTACTTGCTCAAAAATTTTGTACCCCCGAATCATACTTCTTCATAAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTTTCAATGTTCTTTTGTCT</pcr_primer_p1>
		<pcr_primer_p2>TATATACGTTCTTTGGCTTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TGTTTTTCAATGTTCTTTTGTCTAAATTTTTTTTGTAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGTGATATTCGAAATGACCAGAAAGCCAAAGAACGTATATA</canonical_amplicon>
		<polymorphic_amplicon>TGTTTTTCAATGTTCTTTTGTCTAAATTTTTTTTGTAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAWCAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGTGATATTCGAAATGACCAGAAAGCCAAAGAACGTATATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35277</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>22820</contig_pos>
        <strand>+</strand>
        <context>ATTTTTCTGA[C/T]CATCTAACAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGA</left_flank>
        <right_flank>CATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTCTCACAACTTTATCGGTTGCCAATTGCACCATCTTAAACTTCCAACCATTCATAGACAATTTGACTGTGCTCAGCTGGATAGCGTTTTGCACACCATTTGCCAGCGATGCTCTCACTTTCTGTTCTCCTCTTCTCACTTTCACAATGTGTCATTCGGTAAGCGTGGCTGCTAGTAATTTAGACAAGAAACGATTTCAGCTCCGCGTGAAATTTATCGAGTGCCTGCCGTCATGTCTCAGGCAAGTGGGGTATCGATTTTGTGTGAGAACAAGTGATTCCTACACCGTGTCTTCAGTCAGTCACCAAGTGCAAAACTAAATTTCTCTCTTGCTCTTTCTGTTTTTCAATGTTCTTTTGTCTAAATTTTTTTTGTAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGTGATATTCGAAATGACCAGAAAGCCAAAGAACGTATATAAAACGATGAAAATCAATTCTGTCTAAAGCAGCATGTTGGCTGAAAATGTTGGAATGAGCCATGTTCCTCGGAATCCGGACAAAAATACATTTTTGAACGGCTGACATGAGAAAAAGCGTCACAGATTCACCCTTTATATTTAAATTCTAATATTGAAAAAGATAAACTTAAAATGAATAGAAAAATATGTTTTTAATAATGTTCACAAGAGAACATCGGTTCCAGAAAAAGAAAGATGATTGGACAAGAAGGGTACTAAATTAGTGATTCGAGGATACAAAATGAAAGCTGCACAACATTTGAAAACAAATTTTCAATTCTGGGAAAAGAAATATACTACTTGCTCAAAAATTTTGTACCCCCGAATCATACTTCTTCATAAGAACATTGTTCATTCAGGACAAAA</canonical>
            <polymorphic>GTTTCTCACAACTTTATCGGTTGCCAATTGCACCATCTTAAACTTCCAACCATTCATAGACAATTTGACTGTGCTCAGCTGGATAGCGTTTTGCACACCATTTGCCAGCGATGCTCTCACTTTCTGTTCTCCTCTTCTCACTTTCACAATGTGTCATTCGGTAAGCGTGGCTGCTAGTAATTTAGACAAGAAACGATTTCAGCTCCGCGTGAAATTTATCGAGTGCCTGCCGTCATGTCTCAGGCAAGTGGGGTATCGATTTTGTGTGAGAACAAGTGATTCCTACACCGTGTCTTCAGTCAGTCACCAAGTGCAAAACTAAATTTCTCTCTTGCTCTTTCTGTTTTTCAATGTTCTTTTGTCTAAATTTTTTTTGTAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGAYCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGTGATATTCGAAATGACCAGAAAGCCAAAGAACGTATATAAAACGATGAAAATCAATTCTGTCTAAAGCAGCATGTTGGCTGAAAATGTTGGAATGAGCCATGTTCCTCGGAATCCGGACAAAAATACATTTTTGAACGGCTGACATGAGAAAAAGCGTCACAGATTCACCCTTTATATTTAAATTCTAATATTGAAAAAGATAAACTTAAAATGAATAGAAAAATATGTTTTTAATAATGTTCACAAGAGAACATCGGTTCCAGAAAAAGAAAGATGATTGGACAAGAAGGGTACTAAATTAGTGATTCGAGGATACAAAATGAAAGCTGCACAACATTTGAAAACAAATTTTCAATTCTGGGAAAAGAAATATACTACTTGCTCAAAAATTTTGTACCCCCGAATCATACTTCTTCATAAGAACATTGTTCATTCAGGACAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>503 434 63</canonical_bands>
                <polymorphic_bands>566 434</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTTTTCAATGTTCTTTTGTCT</pcr_primer_p1>
		<pcr_primer_p2>TATATACGTTCTTTGGCTTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TGTTTTTCAATGTTCTTTTGTCTAAATTTTTTTTGTAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGTGATATTCGAAATGACCAGAAAGCCAAAGAACGTATATA</canonical_amplicon>
		<polymorphic_amplicon>TGTTTTTCAATGTTCTTTTGTCTAAATTTTTTTTGTAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGAYCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGTGATATTCGAAATGACCAGAAAGCCAAAGAACGTATATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35278</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>22883</contig_pos>
        <strand>+</strand>
        <context>GTGTGATATT[C/G]GAAATGACCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGTGATATT</left_flank>
        <right_flank>GAAATGACCAGAAAGCCAAAGAACGTATATAAAACGATGAAAATCAATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGACTGTGCTCAGCTGGATAGCGTTTTGCACACCATTTGCCAGCGATGCTCTCACTTTCTGTTCTCCTCTTCTCACTTTCACAATGTGTCATTCGGTAAGCGTGGCTGCTAGTAATTTAGACAAGAAACGATTTCAGCTCCGCGTGAAATTTATCGAGTGCCTGCCGTCATGTCTCAGGCAAGTGGGGTATCGATTTTGTGTGAGAACAAGTGATTCCTACACCGTGTCTTCAGTCAGTCACCAAGTGCAAAACTAAATTTCTCTCTTGCTCTTTCTGTTTTTCAATGTTCTTTTGTCTAAATTTTTTTTGTAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGTGATATTCGAAATGACCAGAAAGCCAAAGAACGTATATAAAACGATGAAAATCAATTCTGTCTAAAGCAGCATGTTGGCTGAAAATGTTGGAATGAGCCATGTTCCTCGGAATCCGGACAAAAATACATTTTTGAACGGCTGACATGAGAAAAAGCGTCACAGATTCACCCTTTATATTTAAATTCTAATATTGAAAAAGATAAACTTAAAATGAATAGAAAAATATGTTTTTAATAATGTTCACAAGAGAACATCGGTTCCAGAAAAAGAAAGATGATTGGACAAGAAGGGTACTAAATTAGTGATTCGAGGATACAAAATGAAAGCTGCACAACATTTGAAAACAAATTTTCAATTCTGGGAAAAGAAATATACTACTTGCTCAAAAATTTTGTACCCCCGAATCATACTTCTTCATAAGAACATTGTTCATTCAGGACAAAACAAGGGTTTGAAAATTTAAGAACCGAGCTATTCTATATCATTTGGTGGCCTCGTTTCCATTTG</canonical>
            <polymorphic>TTTGACTGTGCTCAGCTGGATAGCGTTTTGCACACCATTTGCCAGCGATGCTCTCACTTTCTGTTCTCCTCTTCTCACTTTCACAATGTGTCATTCGGTAAGCGTGGCTGCTAGTAATTTAGACAAGAAACGATTTCAGCTCCGCGTGAAATTTATCGAGTGCCTGCCGTCATGTCTCAGGCAAGTGGGGTATCGATTTTGTGTGAGAACAAGTGATTCCTACACCGTGTCTTCAGTCAGTCACCAAGTGCAAAACTAAATTTCTCTCTTGCTCTTTCTGTTTTTCAATGTTCTTTTGTCTAAATTTTTTTTGTAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGTGATATTSGAAATGACCAGAAAGCCAAAGAACGTATATAAAACGATGAAAATCAATTCTGTCTAAAGCAGCATGTTGGCTGAAAATGTTGGAATGAGCCATGTTCCTCGGAATCCGGACAAAAATACATTTTTGAACGGCTGACATGAGAAAAAGCGTCACAGATTCACCCTTTATATTTAAATTCTAATATTGAAAAAGATAAACTTAAAATGAATAGAAAAATATGTTTTTAATAATGTTCACAAGAGAACATCGGTTCCAGAAAAAGAAAGATGATTGGACAAGAAGGGTACTAAATTAGTGATTCGAGGATACAAAATGAAAGCTGCACAACATTTGAAAACAAATTTTCAATTCTGGGAAAAGAAATATACTACTTGCTCAAAAATTTTGTACCCCCGAATCATACTTCTTCATAAGAACATTGTTCATTCAGGACAAAACAAGGGTTTGAAAATTTAAGAACCGAGCTATTCTATATCATTTGGTGGCCTCGTTTCCATTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 478 21</canonical_bands>
                <polymorphic_bands>522 478</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>301 285 199 157 37 21</canonical_bands>
                <polymorphic_bands>322 285 199 157 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTTCGTCTGATTTGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGCTTTAGACAGAATTGATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGTGATATTCGAAATGACCAGAAAGCCAAAGAACGTATATAAAACGATGAAAATCAATTCTGTCTAAAGCA</canonical_amplicon>
		<polymorphic_amplicon>CTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGTGATATTSGAAATGACCAGAAAGCCAAAGAACGTATATAAAACGATGAAAATCAATTCTGTCTAAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35279</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>22950</contig_pos>
        <strand>+</strand>
        <context>AAGCAGCATG[A/T]TGGCTGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAAGAACGTATATAAAACGATGAAAATCAATTCTGTCTAAAGCAGCATG</left_flank>
        <right_flank>TGGCTGAAAATGTTGGAATGAGCCATGTTCCTCGGAATCCGGACAAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTCTTCTCACTTTCACAATGTGTCATTCGGTAAGCGTGGCTGCTAGTAATTTAGACAAGAAACGATTTCAGCTCCGCGTGAAATTTATCGAGTGCCTGCCGTCATGTCTCAGGCAAGTGGGGTATCGATTTTGTGTGAGAACAAGTGATTCCTACACCGTGTCTTCAGTCAGTCACCAAGTGCAAAACTAAATTTCTCTCTTGCTCTTTCTGTTTTTCAATGTTCTTTTGTCTAAATTTTTTTTGTAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGTGATATTCGAAATGACCAGAAAGCCAAAGAACGTATATAAAACGATGAAAATCAATTCTGTCTAAAGCAGCATGTTGGCTGAAAATGTTGGAATGAGCCATGTTCCTCGGAATCCGGACAAAAATACATTTTTGAACGGCTGACATGAGAAAAAGCGTCACAGATTCACCCTTTATATTTAAATTCTAATATTGAAAAAGATAAACTTAAAATGAATAGAAAAATATGTTTTTAATAATGTTCACAAGAGAACATCGGTTCCAGAAAAAGAAAGATGATTGGACAAGAAGGGTACTAAATTAGTGATTCGAGGATACAAAATGAAAGCTGCACAACATTTGAAAACAAATTTTCAATTCTGGGAAAAGAAATATACTACTTGCTCAAAAATTTTGTACCCCCGAATCATACTTCTTCATAAGAACATTGTTCATTCAGGACAAAACAAGGGTTTGAAAATTTAAGAACCGAGCTATTCTATATCATTTGGTGGCCTCGTTTCCATTTGTCCACTATTCTTGACAGAACTTCCGCGTTTTTGATAGATGATTTAATTGAGGTCTTTTTTGGTGTCT</canonical>
            <polymorphic>CCTCTTCTCACTTTCACAATGTGTCATTCGGTAAGCGTGGCTGCTAGTAATTTAGACAAGAAACGATTTCAGCTCCGCGTGAAATTTATCGAGTGCCTGCCGTCATGTCTCAGGCAAGTGGGGTATCGATTTTGTGTGAGAACAAGTGATTCCTACACCGTGTCTTCAGTCAGTCACCAAGTGCAAAACTAAATTTCTCTCTTGCTCTTTCTGTTTTTCAATGTTCTTTTGTCTAAATTTTTTTTGTAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGTGATATTCGAAATGACCAGAAAGCCAAAGAACGTATATAAAACGATGAAAATCAATTCTGTCTAAAGCAGCATGWTGGCTGAAAATGTTGGAATGAGCCATGTTCCTCGGAATCCGGACAAAAATACATTTTTGAACGGCTGACATGAGAAAAAGCGTCACAGATTCACCCTTTATATTTAAATTCTAATATTGAAAAAGATAAACTTAAAATGAATAGAAAAATATGTTTTTAATAATGTTCACAAGAGAACATCGGTTCCAGAAAAAGAAAGATGATTGGACAAGAAGGGTACTAAATTAGTGATTCGAGGATACAAAATGAAAGCTGCACAACATTTGAAAACAAATTTTCAATTCTGGGAAAAGAAATATACTACTTGCTCAAAAATTTTGTACCCCCGAATCATACTTCTTCATAAGAACATTGTTCATTCAGGACAAAACAAGGGTTTGAAAATTTAAGAACCGAGCTATTCTATATCATTTGGTGGCCTCGTTTCCATTTGTCCACTATTCTTGACAGAACTTCCGCGTTTTTGATAGATGATTTAATTGAGGTCTTTTTTGGTGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCAAAATATGATTCACGAAAG</pcr_primer_p1>
		<pcr_primer_p2>AATGTATTTTTGTCCGGATTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGTGATATTCGAAATGACCAGAAAGCCAAAGAACGTATATAAAACGATGAAAATCAATTCTGTCTAAAGCAGCATGTTGGCTGAAAATGTTGGAATGAGCCATGTTCCTCGGAATCCGGACAAAAATACATT</canonical_amplicon>
		<polymorphic_amplicon>CTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGTGATATTCGAAATGACCAGAAAGCCAAAGAACGTATATAAAACGATGAAAATCAATTCTGTCTAAAGCAGCATGWTGGCTGAAAATGTTGGAATGAGCCATGTTCCTCGGAATCCGGACAAAAATACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35280</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>22980</contig_pos>
        <strand>+</strand>
        <context>GAGCCATGTT[C/T]CTCGGAATCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCTGTCTAAAGCAGCATGTTGGCTGAAAATGTTGGAATGAGCCATGTT</left_flank>
        <right_flank>CTCGGAATCCGGACAAAAATACATTTTTGAACGGCTGACATGAGAAAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAAGCGTGGCTGCTAGTAATTTAGACAAGAAACGATTTCAGCTCCGCGTGAAATTTATCGAGTGCCTGCCGTCATGTCTCAGGCAAGTGGGGTATCGATTTTGTGTGAGAACAAGTGATTCCTACACCGTGTCTTCAGTCAGTCACCAAGTGCAAAACTAAATTTCTCTCTTGCTCTTTCTGTTTTTCAATGTTCTTTTGTCTAAATTTTTTTTGTAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGTGATATTCGAAATGACCAGAAAGCCAAAGAACGTATATAAAACGATGAAAATCAATTCTGTCTAAAGCAGCATGTTGGCTGAAAATGTTGGAATGAGCCATGTTCCTCGGAATCCGGACAAAAATACATTTTTGAACGGCTGACATGAGAAAAAGCGTCACAGATTCACCCTTTATATTTAAATTCTAATATTGAAAAAGATAAACTTAAAATGAATAGAAAAATATGTTTTTAATAATGTTCACAAGAGAACATCGGTTCCAGAAAAAGAAAGATGATTGGACAAGAAGGGTACTAAATTAGTGATTCGAGGATACAAAATGAAAGCTGCACAACATTTGAAAACAAATTTTCAATTCTGGGAAAAGAAATATACTACTTGCTCAAAAATTTTGTACCCCCGAATCATACTTCTTCATAAGAACATTGTTCATTCAGGACAAAACAAGGGTTTGAAAATTTAAGAACCGAGCTATTCTATATCATTTGGTGGCCTCGTTTCCATTTGTCCACTATTCTTGACAGAACTTCCGCGTTTTTGATAGATGATTTAATTGAGGTCTTTTTTGGTGTCTTCAACGAGGTCTTGGGAGCTTTGCCAGGTT</canonical>
            <polymorphic>GTAAGCGTGGCTGCTAGTAATTTAGACAAGAAACGATTTCAGCTCCGCGTGAAATTTATCGAGTGCCTGCCGTCATGTCTCAGGCAAGTGGGGTATCGATTTTGTGTGAGAACAAGTGATTCCTACACCGTGTCTTCAGTCAGTCACCAAGTGCAAAACTAAATTTCTCTCTTGCTCTTTCTGTTTTTCAATGTTCTTTTGTCTAAATTTTTTTTGTAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGTGATATTCGAAATGACCAGAAAGCCAAAGAACGTATATAAAACGATGAAAATCAATTCTGTCTAAAGCAGCATGTTGGCTGAAAATGTTGGAATGAGCCATGTTYCTCGGAATCCGGACAAAAATACATTTTTGAACGGCTGACATGAGAAAAAGCGTCACAGATTCACCCTTTATATTTAAATTCTAATATTGAAAAAGATAAACTTAAAATGAATAGAAAAATATGTTTTTAATAATGTTCACAAGAGAACATCGGTTCCAGAAAAAGAAAGATGATTGGACAAGAAGGGTACTAAATTAGTGATTCGAGGATACAAAATGAAAGCTGCACAACATTTGAAAACAAATTTTCAATTCTGGGAAAAGAAATATACTACTTGCTCAAAAATTTTGTACCCCCGAATCATACTTCTTCATAAGAACATTGTTCATTCAGGACAAAACAAGGGTTTGAAAATTTAAGAACCGAGCTATTCTATATCATTTGGTGGCCTCGTTTCCATTTGTCCACTATTCTTGACAGAACTTCCGCGTTTTTGATAGATGATTTAATTGAGGTCTTTTTTGGTGTCTTCAACGAGGTCTTGGGAGCTTTGCCAGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGATGAAAATCAATTCTGTCTA</pcr_primer_p1>
		<pcr_primer_p2>CTTCTTGTCCAATCATCTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACGATGAAAATCAATTCTGTCTAAAGCAGCATGTTGGCTGAAAATGTTGGAATGAGCCATGTTCCTCGGAATCCGGACAAAAATACATTTTTGAACGGCTGACATGAGAAAAAGCGTCACAGATTCACCCTTTATATTTAAATTCTAATATTGAAAAAGATAAACTTAAAATGAATAGAAAAATATGTTTTTAATAATGTTCACAAGAGAACATCGGTTCCAGAAAAAGAAAGATGATTGGACAAGAAG</canonical_amplicon>
		<polymorphic_amplicon>ACGATGAAAATCAATTCTGTCTAAAGCAGCATGTTGGCTGAAAATGTTGGAATGAGCCATGTTYCTCGGAATCCGGACAAAAATACATTTTTGAACGGCTGACATGAGAAAAAGCGTCACAGATTCACCCTTTATATTTAAATTCTAATATTGAAAAAGATAAACTTAAAATGAATAGAAAAATATGTTTTTAATAATGTTCACAAGAGAACATCGGTTCCAGAAAAAGAAAGATGATTGGACAAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35281</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>23025</contig_pos>
        <strand>+</strand>
        <context>CTGACATGAG[A/C]AAAAGCGTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGTTCCTCGGAATCCGGACAAAAATACATTTTTGAACGGCTGACATGAG</left_flank>
        <right_flank>AAAAGCGTCACAGATTCACCCTTTATATTTAAATTCTAATATTGAAAAAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCGTGAAATTTATCGAGTGCCTGCCGTCATGTCTCAGGCAAGTGGGGTATCGATTTTGTGTGAGAACAAGTGATTCCTACACCGTGTCTTCAGTCAGTCACCAAGTGCAAAACTAAATTTCTCTCTTGCTCTTTCTGTTTTTCAATGTTCTTTTGTCTAAATTTTTTTTGTAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGTGATATTCGAAATGACCAGAAAGCCAAAGAACGTATATAAAACGATGAAAATCAATTCTGTCTAAAGCAGCATGTTGGCTGAAAATGTTGGAATGAGCCATGTTCCTCGGAATCCGGACAAAAATACATTTTTGAACGGCTGACATGAGAAAAAGCGTCACAGATTCACCCTTTATATTTAAATTCTAATATTGAAAAAGATAAACTTAAAATGAATAGAAAAATATGTTTTTAATAATGTTCACAAGAGAACATCGGTTCCAGAAAAAGAAAGATGATTGGACAAGAAGGGTACTAAATTAGTGATTCGAGGATACAAAATGAAAGCTGCACAACATTTGAAAACAAATTTTCAATTCTGGGAAAAGAAATATACTACTTGCTCAAAAATTTTGTACCCCCGAATCATACTTCTTCATAAGAACATTGTTCATTCAGGACAAAACAAGGGTTTGAAAATTTAAGAACCGAGCTATTCTATATCATTTGGTGGCCTCGTTTCCATTTGTCCACTATTCTTGACAGAACTTCCGCGTTTTTGATAGATGATTTAATTGAGGTCTTTTTTGGTGTCTTCAACGAGGTCTTGGGAGCTTTGCCAGGTTGACTTTCAGCAACTCCGTAGCCAAGACCAGTAGTTTGAAAGACCC</canonical>
            <polymorphic>CGCGTGAAATTTATCGAGTGCCTGCCGTCATGTCTCAGGCAAGTGGGGTATCGATTTTGTGTGAGAACAAGTGATTCCTACACCGTGTCTTCAGTCAGTCACCAAGTGCAAAACTAAATTTCTCTCTTGCTCTTTCTGTTTTTCAATGTTCTTTTGTCTAAATTTTTTTTGTAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGTGATATTCGAAATGACCAGAAAGCCAAAGAACGTATATAAAACGATGAAAATCAATTCTGTCTAAAGCAGCATGTTGGCTGAAAATGTTGGAATGAGCCATGTTCCTCGGAATCCGGACAAAAATACATTTTTGAACGGCTGACATGAGMAAAAGCGTCACAGATTCACCCTTTATATTTAAATTCTAATATTGAAAAAGATAAACTTAAAATGAATAGAAAAATATGTTTTTAATAATGTTCACAAGAGAACATCGGTTCCAGAAAAAGAAAGATGATTGGACAAGAAGGGTACTAAATTAGTGATTCGAGGATACAAAATGAAAGCTGCACAACATTTGAAAACAAATTTTCAATTCTGGGAAAAGAAATATACTACTTGCTCAAAAATTTTGTACCCCCGAATCATACTTCTTCATAAGAACATTGTTCATTCAGGACAAAACAAGGGTTTGAAAATTTAAGAACCGAGCTATTCTATATCATTTGGTGGCCTCGTTTCCATTTGTCCACTATTCTTGACAGAACTTCCGCGTTTTTGATAGATGATTTAATTGAGGTCTTTTTTGGTGTCTTCAACGAGGTCTTGGGAGCTTTGCCAGGTTGACTTTCAGCAACTCCGTAGCCAAGACCAGTAGTTTGAAAGACCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGATGAAAATCAATTCTGTCTA</pcr_primer_p1>
		<pcr_primer_p2>CTTCTTGTCCAATCATCTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACGATGAAAATCAATTCTGTCTAAAGCAGCATGTTGGCTGAAAATGTTGGAATGAGCCATGTTCCTCGGAATCCGGACAAAAATACATTTTTGAACGGCTGACATGAGAAAAAGCGTCACAGATTCACCCTTTATATTTAAATTCTAATATTGAAAAAGATAAACTTAAAATGAATAGAAAAATATGTTTTTAATAATGTTCACAAGAGAACATCGGTTCCAGAAAAAGAAAGATGATTGGACAAGAAG</canonical_amplicon>
		<polymorphic_amplicon>ACGATGAAAATCAATTCTGTCTAAAGCAGCATGTTGGCTGAAAATGTTGGAATGAGCCATGTTCCTCGGAATCCGGACAAAAATACATTTTTGAACGGCTGACATGAGMAAAAGCGTCACAGATTCACCCTTTATATTTAAATTCTAATATTGAAAAAGATAAACTTAAAATGAATAGAAAAATATGTTTTTAATAATGTTCACAAGAGAACATCGGTTCCAGAAAAAGAAAGATGATTGGACAAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35282</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>23056</contig_pos>
        <strand>+</strand>
        <context>CTTTATATTT[A/G]AATTCTAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGAACGGCTGACATGAGAAAAAGCGTCACAGATTCACCCTTTATATTT</left_flank>
        <right_flank>AATTCTAATATTGAAAAAGATAAACTTAAAATGAATAGAAAAATATGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCTCAGGCAAGTGGGGTATCGATTTTGTGTGAGAACAAGTGATTCCTACACCGTGTCTTCAGTCAGTCACCAAGTGCAAAACTAAATTTCTCTCTTGCTCTTTCTGTTTTTCAATGTTCTTTTGTCTAAATTTTTTTTGTAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGTGATATTCGAAATGACCAGAAAGCCAAAGAACGTATATAAAACGATGAAAATCAATTCTGTCTAAAGCAGCATGTTGGCTGAAAATGTTGGAATGAGCCATGTTCCTCGGAATCCGGACAAAAATACATTTTTGAACGGCTGACATGAGAAAAAGCGTCACAGATTCACCCTTTATATTTAAATTCTAATATTGAAAAAGATAAACTTAAAATGAATAGAAAAATATGTTTTTAATAATGTTCACAAGAGAACATCGGTTCCAGAAAAAGAAAGATGATTGGACAAGAAGGGTACTAAATTAGTGATTCGAGGATACAAAATGAAAGCTGCACAACATTTGAAAACAAATTTTCAATTCTGGGAAAAGAAATATACTACTTGCTCAAAAATTTTGTACCCCCGAATCATACTTCTTCATAAGAACATTGTTCATTCAGGACAAAACAAGGGTTTGAAAATTTAAGAACCGAGCTATTCTATATCATTTGGTGGCCTCGTTTCCATTTGTCCACTATTCTTGACAGAACTTCCGCGTTTTTGATAGATGATTTAATTGAGGTCTTTTTTGGTGTCTTCAACGAGGTCTTGGGAGCTTTGCCAGGTTGACTTTCAGCAACTCCGTAGCCAAGACCAGTAGTTTGAAAGACCCTGGAGAAACATAAATAAAAACGCTTTCGAAT</canonical>
            <polymorphic>GTCTCAGGCAAGTGGGGTATCGATTTTGTGTGAGAACAAGTGATTCCTACACCGTGTCTTCAGTCAGTCACCAAGTGCAAAACTAAATTTCTCTCTTGCTCTTTCTGTTTTTCAATGTTCTTTTGTCTAAATTTTTTTTGTAAACCTCTTCGTCTGATTTGATTTTTGAACGTGCCATGAGAGAATTCCATTCATCCAGATCCTTCAAAATATGATTCACGAAAGAAAGGATACATTTTGAAACAAAAATTATATTTTTCTGATCATCTAACATTTTATATTTAGAATGTAGTTCTTGAGATATTCGAAATGATTCGTGTGATATTCGAAATGACCAGAAAGCCAAAGAACGTATATAAAACGATGAAAATCAATTCTGTCTAAAGCAGCATGTTGGCTGAAAATGTTGGAATGAGCCATGTTCCTCGGAATCCGGACAAAAATACATTTTTGAACGGCTGACATGAGAAAAAGCGTCACAGATTCACCCTTTATATTTRAATTCTAATATTGAAAAAGATAAACTTAAAATGAATAGAAAAATATGTTTTTAATAATGTTCACAAGAGAACATCGGTTCCAGAAAAAGAAAGATGATTGGACAAGAAGGGTACTAAATTAGTGATTCGAGGATACAAAATGAAAGCTGCACAACATTTGAAAACAAATTTTCAATTCTGGGAAAAGAAATATACTACTTGCTCAAAAATTTTGTACCCCCGAATCATACTTCTTCATAAGAACATTGTTCATTCAGGACAAAACAAGGGTTTGAAAATTTAAGAACCGAGCTATTCTATATCATTTGGTGGCCTCGTTTCCATTTGTCCACTATTCTTGACAGAACTTCCGCGTTTTTGATAGATGATTTAATTGAGGTCTTTTTTGGTGTCTTCAACGAGGTCTTGGGAGCTTTGCCAGGTTGACTTTCAGCAACTCCGTAGCCAAGACCAGTAGTTTGAAAGACCCTGGAGAAACATAAATAAAAACGCTTTCGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>317 224 166 85 69 54 44 41</canonical_bands>
                <polymorphic_bands>483 224 85 69 54 44 41</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>498 229 130 90 28 25</canonical_bands>
                <polymorphic_bands>526 229 130 90 25</polymorphic_bands>
            </assay>
            <assay>
                <site>ATTTAAAT</site>
                <isoschizomers>
                    <enzyme>SmiI</enzyme>
                    <enzyme>SwaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGATGAAAATCAATTCTGTCTA</pcr_primer_p1>
		<pcr_primer_p2>CTTCTTGTCCAATCATCTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACGATGAAAATCAATTCTGTCTAAAGCAGCATGTTGGCTGAAAATGTTGGAATGAGCCATGTTCCTCGGAATCCGGACAAAAATACATTTTTGAACGGCTGACATGAGAAAAAGCGTCACAGATTCACCCTTTATATTTAAATTCTAATATTGAAAAAGATAAACTTAAAATGAATAGAAAAATATGTTTTTAATAATGTTCACAAGAGAACATCGGTTCCAGAAAAAGAAAGATGATTGGACAAGAAG</canonical_amplicon>
		<polymorphic_amplicon>ACGATGAAAATCAATTCTGTCTAAAGCAGCATGTTGGCTGAAAATGTTGGAATGAGCCATGTTCCTCGGAATCCGGACAAAAATACATTTTTGAACGGCTGACATGAGAAAAAGCGTCACAGATTCACCCTTTATATTTRAATTCTAATATTGAAAAAGATAAACTTAAAATGAATAGAAAAATATGTTTTTAATAATGTTCACAAGAGAACATCGGTTCCAGAAAAAGAAAGATGATTGGACAAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35283</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>27723</contig_pos>
        <strand>+</strand>
        <context>TCAGAAACAG[C/G]AGCRCAGACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCAGAGCAACGCCCTTTAAAAGATCTTCTCCTGACCTGCATCAGAAACAG</left_flank>
        <right_flank>AGCACAGACACCGAGGCAAACGCCTCGAATCGAATCACCCACCTGAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGGTTGAAAGTTCGTTCTGATAAATATCGAGTTTTCGACTTGTTTCTTATTGCCATTTTCAGTACAATAAGCTCCTTCAAAAAAACTTCAAAAAATCTATCAGTCCATAAAACTACGAAAAATGGTAGTTTTCAAATAAATACAGACAAAAAAAAACAAAAAAAATGGTGCGGTTTATAGCAAAATATCATCCAGTGGAAAACTACACTATTTTTGATTAATGTACCCTAAGAACTTTTCGATGTACCCTGGGATCCTTTCTCTGATGTACCCTTAGAACCACCATGAGATGTACCCCTTGAACCTACCACCCAGATGTACCCTAAGATCTGATGTACCCTCTGATCCAATGTACCCTAAGATCCCGATGTACCCTTTTTCGATGTACCCTTGGATACTGAGCCTCCATACCAGTATTCCACAAAACAGAAACAGGTAACACTTCTATCAGAGCAACGCCCTTTAAAAGATCTTCTCCTGACCTGCATCAGAAACAGTAGCACAGACACCGAGGCAAACGCCTCGAATCGAATCACCCACCTGAAAATACAGTGTGGTCAATATCTAGAGATATATGACTTGTCTAACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGAGAACAACCCAACGCTTGGCGAATTTTGCTTCGAAATGATAGGAAGAGCCGAGATCAGAAGATCAAAAAGCAACGTTGCAGCAGACGCTTGGCTGCGACAAGCCAGTTACAACTGTGGTACTCGACGAACGGTTAGAGATATCGAAATTCTGACACCGCCATTCGATTCAGCATGAAAAGTTACCCTAGGGTACAAGTTTCCATGATTTCGCCAACTTCCGTACATGAGCACCACCCCTGACAATAGTAAGTCTCTCGATTTGATTGAGACGTAACACACCGGGGGGCAGTGAAGGCACACAGAAGCGGAGGCTGATAACGTGGGGCGAGACTCTCGTAAGCTCTTGTGGCACTTTTATTGATATAACTCGTA</canonical>
            <polymorphic>TTTGGTTGAAAGTTCGTTCTGATAAATATCGAGTTTTCGACTTGTTTCTTATTGCCATTTTCAGTACAATAAGCTCCTTCAAAAAAACTTCAAAAAATCTATCAGTCCATAAAACTACGAAAAATGGTAGTTTTCAAATAAATACAGACAAAAAAAAACAAAAAAAATGGTGCGGTTTATAGCAAAATATCATCCAGTGGAAAACTACACTATTTTTGATTAATGTACCCTAAGAACTTTTCGATGTACCCTGGGATCCTTTCTCTGATGTACCCTTAGAACCACCATGAGATGTACCCCTTGAACCTACCACCCAGATGTACCCTAAGATCTGATGTACCCTCTGATCCAATGTACCCTAAGATCCCGATGTACCCTTTTTCGATGTACCCTTGGATACTGAGCCTCCATACCAGTATTCCACAAAACAGAAACAGGTAACACTTCTATCAGAGCAACGCCCTTTAAAAGATCTTCTCCTGACCTGCATCAGAAACAGSAGCACAGACACCGAGGCAAACGCCTCGAATCGAATCACCCACCTGAAAATACAGTGTGGTCAATATCTAGAGATATATGACTTGTCTAACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGAGAACAACCCAACGCTTGGCGAATTTTGCTTCGAAATGATAGGAAGAGCCGAGATCAGAAGATCAAAAAGCAACGTTGCAGCAGACGCTTGGCTGCGACAAGCCAGTTACAACTGTGGTACTCGACGAACGGTTAGAGATATCGAAATTCTGACACCGCCATTCGATTCAGCATGAAAAGTTACCCTAGGGTACAAGTTTCCATGATTTCGCCAACTTCCGTACATGAGCACCACCCCTGACAATAGTAAGTCTCTCGATTTGATTGAGACGTAACACACCGGGGGGCAGTGAAGGCACACAGAAGCGGAGGCTGATAACGTGGGGCGAGACTCTCGTAAGCTCTTGTGGCACTTTTATTGATATAACTCGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>498 242 147 55 41 17</canonical_bands>
                <polymorphic_bands>553 242 147 41 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAACAGAAACAGGTAACACTT</pcr_primer_p1>
		<pcr_primer_p2>CTATCATTTCGAAGCAAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAAAACAGAAACAGGTAACACTTCTATCAGAGCAACGCCCTTTAAAAGATCTTCTCCTGACCTGCATCAGAAACAGTAGCACAGACACCGAGGCAAACGCCTCGAATCGAATCACCCACCTGAAAATACAGTGTGGTCAATATCTAGAGATATATGACTTGTCTAACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGAGAACAACCCAACGCTTGGCGAATTTTGCTTCGAAATGATAG</canonical_amplicon>
		<polymorphic_amplicon>CAAAACAGAAACAGGTAACACTTCTATCAGAGCAACGCCCTTTAAAAGATCTTCTCCTGACCTGCATCAGAAACAGSAGCACAGACACCGAGGCAAACGCCTCGAATCGAATCACCCACCTGAAAATACAGTGTGGTCAATATCTAGAGATATATGACTTGTCTAACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGAGAACAACCCAACGCTTGGCGAATTTTGCTTCGAAATGATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35284</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>27727</contig_pos>
        <strand>+</strand>
        <context>AAACAGSAGC[A/G]CAGACACCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCAACGCCCTTTAAAAGATCTTCTCCTGACCTGCATCAGAAACAGTAGC</left_flank>
        <right_flank>CAGACACCGAGGCAAACGCCTCGAATCGAATCACCCACCTGAAAATACAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTGAAAGTTCGTTCTGATAAATATCGAGTTTTCGACTTGTTTCTTATTGCCATTTTCAGTACAATAAGCTCCTTCAAAAAAACTTCAAAAAATCTATCAGTCCATAAAACTACGAAAAATGGTAGTTTTCAAATAAATACAGACAAAAAAAAACAAAAAAAATGGTGCGGTTTATAGCAAAATATCATCCAGTGGAAAACTACACTATTTTTGATTAATGTACCCTAAGAACTTTTCGATGTACCCTGGGATCCTTTCTCTGATGTACCCTTAGAACCACCATGAGATGTACCCCTTGAACCTACCACCCAGATGTACCCTAAGATCTGATGTACCCTCTGATCCAATGTACCCTAAGATCCCGATGTACCCTTTTTCGATGTACCCTTGGATACTGAGCCTCCATACCAGTATTCCACAAAACAGAAACAGGTAACACTTCTATCAGAGCAACGCCCTTTAAAAGATCTTCTCCTGACCTGCATCAGAAACAGTAGCACAGACACCGAGGCAAACGCCTCGAATCGAATCACCCACCTGAAAATACAGTGTGGTCAATATCTAGAGATATATGACTTGTCTAACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGAGAACAACCCAACGCTTGGCGAATTTTGCTTCGAAATGATAGGAAGAGCCGAGATCAGAAGATCAAAAAGCAACGTTGCAGCAGACGCTTGGCTGCGACAAGCCAGTTACAACTGTGGTACTCGACGAACGGTTAGAGATATCGAAATTCTGACACCGCCATTCGATTCAGCATGAAAAGTTACCCTAGGGTACAAGTTTCCATGATTTCGCCAACTTCCGTACATGAGCACCACCCCTGACAATAGTAAGTCTCTCGATTTGATTGAGACGTAACACACCGGGGGGCAGTGAAGGCACACAGAAGCGGAGGCTGATAACGTGGGGCGAGACTCTCGTAAGCTCTTGTGGCACTTTTATTGATATAACTCGTAAATG</canonical>
            <polymorphic>GTTGAAAGTTCGTTCTGATAAATATCGAGTTTTCGACTTGTTTCTTATTGCCATTTTCAGTACAATAAGCTCCTTCAAAAAAACTTCAAAAAATCTATCAGTCCATAAAACTACGAAAAATGGTAGTTTTCAAATAAATACAGACAAAAAAAAACAAAAAAAATGGTGCGGTTTATAGCAAAATATCATCCAGTGGAAAACTACACTATTTTTGATTAATGTACCCTAAGAACTTTTCGATGTACCCTGGGATCCTTTCTCTGATGTACCCTTAGAACCACCATGAGATGTACCCCTTGAACCTACCACCCAGATGTACCCTAAGATCTGATGTACCCTCTGATCCAATGTACCCTAAGATCCCGATGTACCCTTTTTCGATGTACCCTTGGATACTGAGCCTCCATACCAGTATTCCACAAAACAGAAACAGGTAACACTTCTATCAGAGCAACGCCCTTTAAAAGATCTTCTCCTGACCTGCATCAGAAACAGTAGCRCAGACACCGAGGCAAACGCCTCGAATCGAATCACCCACCTGAAAATACAGTGTGGTCAATATCTAGAGATATATGACTTGTCTAACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGAGAACAACCCAACGCTTGGCGAATTTTGCTTCGAAATGATAGGAAGAGCCGAGATCAGAAGATCAAAAAGCAACGTTGCAGCAGACGCTTGGCTGCGACAAGCCAGTTACAACTGTGGTACTCGACGAACGGTTAGAGATATCGAAATTCTGACACCGCCATTCGATTCAGCATGAAAAGTTACCCTAGGGTACAAGTTTCCATGATTTCGCCAACTTCCGTACATGAGCACCACCCCTGACAATAGTAAGTCTCTCGATTTGATTGAGACGTAACACACCGGGGGGCAGTGAAGGCACACAGAAGCGGAGGCTGATAACGTGGGGCGAGACTCTCGTAAGCTCTTGTGGCACTTTTATTGATATAACTCGTAAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>168 119 111 76 75 61 52 43 38 28 27 27 26 25 23 20 15 15 13 10 6 6 4 3 3 2 2 2</canonical_bands>
                <polymorphic_bands>168 119 111 76 75 67 52 43 38 28 27 27 26 25 23 20 15 15 13 10 6 4 3 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAACAGAAACAGGTAACACTT</pcr_primer_p1>
		<pcr_primer_p2>CTATCATTTCGAAGCAAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAAAACAGAAACAGGTAACACTTCTATCAGAGCAACGCCCTTTAAAAGATCTTCTCCTGACCTGCATCAGAAACAGTAGCACAGACACCGAGGCAAACGCCTCGAATCGAATCACCCACCTGAAAATACAGTGTGGTCAATATCTAGAGATATATGACTTGTCTAACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGAGAACAACCCAACGCTTGGCGAATTTTGCTTCGAAATGATAG</canonical_amplicon>
		<polymorphic_amplicon>CAAAACAGAAACAGGTAACACTTCTATCAGAGCAACGCCCTTTAAAAGATCTTCTCCTGACCTGCATCAGAAACAGTAGCRCAGACACCGAGGCAAACGCCTCGAATCGAATCACCCACCTGAAAATACAGTGTGGTCAATATCTAGAGATATATGACTTGTCTAACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGAGAACAACCCAACGCTTGGCGAATTTTGCTTCGAAATGATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35285</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>27739</contig_pos>
        <strand>+</strand>
        <context>AGACACCGAG[A/G]CAAACGCCTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAAAGATCTTCTCCTGACCTGCATCAGAAACAGTAGCACAGACACCGAG</left_flank>
        <right_flank>CAAACGCCTCGAATCGAATCACCCACCTGAAAATACAGTGTGGTCAATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGATAAATATCGAGTTTTCGACTTGTTTCTTATTGCCATTTTCAGTACAATAAGCTCCTTCAAAAAAACTTCAAAAAATCTATCAGTCCATAAAACTACGAAAAATGGTAGTTTTCAAATAAATACAGACAAAAAAAAACAAAAAAAATGGTGCGGTTTATAGCAAAATATCATCCAGTGGAAAACTACACTATTTTTGATTAATGTACCCTAAGAACTTTTCGATGTACCCTGGGATCCTTTCTCTGATGTACCCTTAGAACCACCATGAGATGTACCCCTTGAACCTACCACCCAGATGTACCCTAAGATCTGATGTACCCTCTGATCCAATGTACCCTAAGATCCCGATGTACCCTTTTTCGATGTACCCTTGGATACTGAGCCTCCATACCAGTATTCCACAAAACAGAAACAGGTAACACTTCTATCAGAGCAACGCCCTTTAAAAGATCTTCTCCTGACCTGCATCAGAAACAGTAGCACAGACACCGAGGCAAACGCCTCGAATCGAATCACCCACCTGAAAATACAGTGTGGTCAATATCTAGAGATATATGACTTGTCTAACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGAGAACAACCCAACGCTTGGCGAATTTTGCTTCGAAATGATAGGAAGAGCCGAGATCAGAAGATCAAAAAGCAACGTTGCAGCAGACGCTTGGCTGCGACAAGCCAGTTACAACTGTGGTACTCGACGAACGGTTAGAGATATCGAAATTCTGACACCGCCATTCGATTCAGCATGAAAAGTTACCCTAGGGTACAAGTTTCCATGATTTCGCCAACTTCCGTACATGAGCACCACCCCTGACAATAGTAAGTCTCTCGATTTGATTGAGACGTAACACACCGGGGGGCAGTGAAGGCACACAGAAGCGGAGGCTGATAACGTGGGGCGAGACTCTCGTAAGCTCTTGTGGCACTTTTATTGATATAACTCGTAAATGACGGCCTTAATC</canonical>
            <polymorphic>TTCTGATAAATATCGAGTTTTCGACTTGTTTCTTATTGCCATTTTCAGTACAATAAGCTCCTTCAAAAAAACTTCAAAAAATCTATCAGTCCATAAAACTACGAAAAATGGTAGTTTTCAAATAAATACAGACAAAAAAAAACAAAAAAAATGGTGCGGTTTATAGCAAAATATCATCCAGTGGAAAACTACACTATTTTTGATTAATGTACCCTAAGAACTTTTCGATGTACCCTGGGATCCTTTCTCTGATGTACCCTTAGAACCACCATGAGATGTACCCCTTGAACCTACCACCCAGATGTACCCTAAGATCTGATGTACCCTCTGATCCAATGTACCCTAAGATCCCGATGTACCCTTTTTCGATGTACCCTTGGATACTGAGCCTCCATACCAGTATTCCACAAAACAGAAACAGGTAACACTTCTATCAGAGCAACGCCCTTTAAAAGATCTTCTCCTGACCTGCATCAGAAACAGTAGCACAGACACCGAGRCAAACGCCTCGAATCGAATCACCCACCTGAAAATACAGTGTGGTCAATATCTAGAGATATATGACTTGTCTAACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGAGAACAACCCAACGCTTGGCGAATTTTGCTTCGAAATGATAGGAAGAGCCGAGATCAGAAGATCAAAAAGCAACGTTGCAGCAGACGCTTGGCTGCGACAAGCCAGTTACAACTGTGGTACTCGACGAACGGTTAGAGATATCGAAATTCTGACACCGCCATTCGATTCAGCATGAAAAGTTACCCTAGGGTACAAGTTTCCATGATTTCGCCAACTTCCGTACATGAGCACCACCCCTGACAATAGTAAGTCTCTCGATTTGATTGAGACGTAACACACCGGGGGGCAGTGAAGGCACACAGAAGCGGAGGCTGATAACGTGGGGCGAGACTCTCGTAAGCTCTTGTGGCACTTTTATTGATATAACTCGTAAATGACGGCCTTAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>301 233 141 120 109 95 1</canonical_bands>
                <polymorphic_bands>421 233 141 109 95 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAACAGAAACAGGTAACACTT</pcr_primer_p1>
		<pcr_primer_p2>CTATCATTTCGAAGCAAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAAAACAGAAACAGGTAACACTTCTATCAGAGCAACGCCCTTTAAAAGATCTTCTCCTGACCTGCATCAGAAACAGTAGCACAGACACCGAGGCAAACGCCTCGAATCGAATCACCCACCTGAAAATACAGTGTGGTCAATATCTAGAGATATATGACTTGTCTAACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGAGAACAACCCAACGCTTGGCGAATTTTGCTTCGAAATGATAG</canonical_amplicon>
		<polymorphic_amplicon>CAAAACAGAAACAGGTAACACTTCTATCAGAGCAACGCCCTTTAAAAGATCTTCTCCTGACCTGCATCAGAAACAGTAGCACAGACACCGAGRCAAACGCCTCGAATCGAATCACCCACCTGAAAATACAGTGTGGTCAATATCTAGAGATATATGACTTGTCTAACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGAGAACAACCCAACGCTTGGCGAATTTTGCTTCGAAATGATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35286</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>27766</contig_pos>
        <strand>+</strand>
        <context>AATCACCCAC[A/C]TGAAAMTACA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAACAGTAGCACAGACACCGAGGCAAACGCCTCGAATCGAATCACCCAC</left_flank>
        <right_flank>TGAAAATACAGTGTGGTCAATATCTAGAGATATATGACTTGTCTAACGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTCTTATTGCCATTTTCAGTACAATAAGCTCCTTCAAAAAAACTTCAAAAAATCTATCAGTCCATAAAACTACGAAAAATGGTAGTTTTCAAATAAATACAGACAAAAAAAAACAAAAAAAATGGTGCGGTTTATAGCAAAATATCATCCAGTGGAAAACTACACTATTTTTGATTAATGTACCCTAAGAACTTTTCGATGTACCCTGGGATCCTTTCTCTGATGTACCCTTAGAACCACCATGAGATGTACCCCTTGAACCTACCACCCAGATGTACCCTAAGATCTGATGTACCCTCTGATCCAATGTACCCTAAGATCCCGATGTACCCTTTTTCGATGTACCCTTGGATACTGAGCCTCCATACCAGTATTCCACAAAACAGAAACAGGTAACACTTCTATCAGAGCAACGCCCTTTAAAAGATCTTCTCCTGACCTGCATCAGAAACAGTAGCACAGACACCGAGGCAAACGCCTCGAATCGAATCACCCACCTGAAAATACAGTGTGGTCAATATCTAGAGATATATGACTTGTCTAACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGAGAACAACCCAACGCTTGGCGAATTTTGCTTCGAAATGATAGGAAGAGCCGAGATCAGAAGATCAAAAAGCAACGTTGCAGCAGACGCTTGGCTGCGACAAGCCAGTTACAACTGTGGTACTCGACGAACGGTTAGAGATATCGAAATTCTGACACCGCCATTCGATTCAGCATGAAAAGTTACCCTAGGGTACAAGTTTCCATGATTTCGCCAACTTCCGTACATGAGCACCACCCCTGACAATAGTAAGTCTCTCGATTTGATTGAGACGTAACACACCGGGGGGCAGTGAAGGCACACAGAAGCGGAGGCTGATAACGTGGGGCGAGACTCTCGTAAGCTCTTGTGGCACTTTTATTGATATAACTCGTAAATGACGGCCTTAATCAAAAAATTCATCATAGTAAATGTTGTA</canonical>
            <polymorphic>GTTTCTTATTGCCATTTTCAGTACAATAAGCTCCTTCAAAAAAACTTCAAAAAATCTATCAGTCCATAAAACTACGAAAAATGGTAGTTTTCAAATAAATACAGACAAAAAAAAACAAAAAAAATGGTGCGGTTTATAGCAAAATATCATCCAGTGGAAAACTACACTATTTTTGATTAATGTACCCTAAGAACTTTTCGATGTACCCTGGGATCCTTTCTCTGATGTACCCTTAGAACCACCATGAGATGTACCCCTTGAACCTACCACCCAGATGTACCCTAAGATCTGATGTACCCTCTGATCCAATGTACCCTAAGATCCCGATGTACCCTTTTTCGATGTACCCTTGGATACTGAGCCTCCATACCAGTATTCCACAAAACAGAAACAGGTAACACTTCTATCAGAGCAACGCCCTTTAAAAGATCTTCTCCTGACCTGCATCAGAAACAGTAGCACAGACACCGAGGCAAACGCCTCGAATCGAATCACCCACMTGAAAATACAGTGTGGTCAATATCTAGAGATATATGACTTGTCTAACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGAGAACAACCCAACGCTTGGCGAATTTTGCTTCGAAATGATAGGAAGAGCCGAGATCAGAAGATCAAAAAGCAACGTTGCAGCAGACGCTTGGCTGCGACAAGCCAGTTACAACTGTGGTACTCGACGAACGGTTAGAGATATCGAAATTCTGACACCGCCATTCGATTCAGCATGAAAAGTTACCCTAGGGTACAAGTTTCCATGATTTCGCCAACTTCCGTACATGAGCACCACCCCTGACAATAGTAAGTCTCTCGATTTGATTGAGACGTAACACACCGGGGGGCAGTGAAGGCACACAGAAGCGGAGGCTGATAACGTGGGGCGAGACTCTCGTAAGCTCTTGTGGCACTTTTATTGATATAACTCGTAAATGACGGCCTTAATCAAAAAATTCATCATAGTAAATGTTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAACAGAAACAGGTAACACTT</pcr_primer_p1>
		<pcr_primer_p2>CTATCATTTCGAAGCAAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAAAACAGAAACAGGTAACACTTCTATCAGAGCAACGCCCTTTAAAAGATCTTCTCCTGACCTGCATCAGAAACAGTAGCACAGACACCGAGGCAAACGCCTCGAATCGAATCACCCACCTGAAAATACAGTGTGGTCAATATCTAGAGATATATGACTTGTCTAACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGAGAACAACCCAACGCTTGGCGAATTTTGCTTCGAAATGATAG</canonical_amplicon>
		<polymorphic_amplicon>CAAAACAGAAACAGGTAACACTTCTATCAGAGCAACGCCCTTTAAAAGATCTTCTCCTGACCTGCATCAGAAACAGTAGCACAGACACCGAGGCAAACGCCTCGAATCGAATCACCCACMTGAAAATACAGTGTGGTCAATATCTAGAGATATATGACTTGTCTAACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGAGAACAACCCAACGCTTGGCGAATTTTGCTTCGAAATGATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35287</snp_id>
        <super_contig>c009801394.Contig1</super_contig>
        <contig_pos>27772</contig_pos>
        <strand>+</strand>
        <context>CCACMTGAAA[A/C]TACAGTGTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTAGCACAGACACCGAGGCAAACGCCTCGAATCGAATCACCCACCTGAAA</left_flank>
        <right_flank>TACAGTGTGGTCAATATCTAGAGATATATGACTTGTCTAACGACGGTCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTGCCATTTTCAGTACAATAAGCTCCTTCAAAAAAACTTCAAAAAATCTATCAGTCCATAAAACTACGAAAAATGGTAGTTTTCAAATAAATACAGACAAAAAAAAACAAAAAAAATGGTGCGGTTTATAGCAAAATATCATCCAGTGGAAAACTACACTATTTTTGATTAATGTACCCTAAGAACTTTTCGATGTACCCTGGGATCCTTTCTCTGATGTACCCTTAGAACCACCATGAGATGTACCCCTTGAACCTACCACCCAGATGTACCCTAAGATCTGATGTACCCTCTGATCCAATGTACCCTAAGATCCCGATGTACCCTTTTTCGATGTACCCTTGGATACTGAGCCTCCATACCAGTATTCCACAAAACAGAAACAGGTAACACTTCTATCAGAGCAACGCCCTTTAAAAGATCTTCTCCTGACCTGCATCAGAAACAGTAGCACAGACACCGAGGCAAACGCCTCGAATCGAATCACCCACCTGAAAATACAGTGTGGTCAATATCTAGAGATATATGACTTGTCTAACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGAGAACAACCCAACGCTTGGCGAATTTTGCTTCGAAATGATAGGAAGAGCCGAGATCAGAAGATCAAAAAGCAACGTTGCAGCAGACGCTTGGCTGCGACAAGCCAGTTACAACTGTGGTACTCGACGAACGGTTAGAGATATCGAAATTCTGACACCGCCATTCGATTCAGCATGAAAAGTTACCCTAGGGTACAAGTTTCCATGATTTCGCCAACTTCCGTACATGAGCACCACCCCTGACAATAGTAAGTCTCTCGATTTGATTGAGACGTAACACACCGGGGGGCAGTGAAGGCACACAGAAGCGGAGGCTGATAACGTGGGGCGAGACTCTCGTAAGCTCTTGTGGCACTTTTATTGATATAACTCGTAAATGACGGCCTTAATCAAAAAATTCATCATAGTAAATGTTGTAGGGTTT</canonical>
            <polymorphic>TATTGCCATTTTCAGTACAATAAGCTCCTTCAAAAAAACTTCAAAAAATCTATCAGTCCATAAAACTACGAAAAATGGTAGTTTTCAAATAAATACAGACAAAAAAAAACAAAAAAAATGGTGCGGTTTATAGCAAAATATCATCCAGTGGAAAACTACACTATTTTTGATTAATGTACCCTAAGAACTTTTCGATGTACCCTGGGATCCTTTCTCTGATGTACCCTTAGAACCACCATGAGATGTACCCCTTGAACCTACCACCCAGATGTACCCTAAGATCTGATGTACCCTCTGATCCAATGTACCCTAAGATCCCGATGTACCCTTTTTCGATGTACCCTTGGATACTGAGCCTCCATACCAGTATTCCACAAAACAGAAACAGGTAACACTTCTATCAGAGCAACGCCCTTTAAAAGATCTTCTCCTGACCTGCATCAGAAACAGTAGCACAGACACCGAGGCAAACGCCTCGAATCGAATCACCCACCTGAAAMTACAGTGTGGTCAATATCTAGAGATATATGACTTGTCTAACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGAGAACAACCCAACGCTTGGCGAATTTTGCTTCGAAATGATAGGAAGAGCCGAGATCAGAAGATCAAAAAGCAACGTTGCAGCAGACGCTTGGCTGCGACAAGCCAGTTACAACTGTGGTACTCGACGAACGGTTAGAGATATCGAAATTCTGACACCGCCATTCGATTCAGCATGAAAAGTTACCCTAGGGTACAAGTTTCCATGATTTCGCCAACTTCCGTACATGAGCACCACCCCTGACAATAGTAAGTCTCTCGATTTGATTGAGACGTAACACACCGGGGGGCAGTGAAGGCACACAGAAGCGGAGGCTGATAACGTGGGGCGAGACTCTCGTAAGCTCTTGTGGCACTTTTATTGATATAACTCGTAAATGACGGCCTTAATCAAAAAATTCATCATAGTAAATGTTGTAGGGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAACAGAAACAGGTAACACTT</pcr_primer_p1>
		<pcr_primer_p2>CTATCATTTCGAAGCAAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAAAACAGAAACAGGTAACACTTCTATCAGAGCAACGCCCTTTAAAAGATCTTCTCCTGACCTGCATCAGAAACAGTAGCACAGACACCGAGGCAAACGCCTCGAATCGAATCACCCACCTGAAAATACAGTGTGGTCAATATCTAGAGATATATGACTTGTCTAACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGAGAACAACCCAACGCTTGGCGAATTTTGCTTCGAAATGATAG</canonical_amplicon>
		<polymorphic_amplicon>CAAAACAGAAACAGGTAACACTTCTATCAGAGCAACGCCCTTTAAAAGATCTTCTCCTGACCTGCATCAGAAACAGTAGCACAGACACCGAGGCAAACGCCTCGAATCGAATCACCCACCTGAAAMTACAGTGTGGTCAATATCTAGAGATATATGACTTGTCTAACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGAGAACAACCCAACGCTTGGCGAATTTTGCTTCGAAATGATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35288</snp_id>
        <super_contig>c009801720.Contig1</super_contig>
        <contig_pos>2098</contig_pos>
        <strand></strand>
        <context>TCCATATGTC[T/A]TGACTCTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTC</left_flank>
        <right_flank>TGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGT</right_flank>
        <qual_score>35</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTTCCTAAAAAATCCAGACACCAGGAAGAAATTTTTAACTACATACCAATTTCCCTTCTAAACTAGACTTGCGTTTTCCAATCACAAAGTTCCCAATAAATAACAAAATCCCCAACAACCAAAGGTTGCCTTGTTTTCAATATTCTTTCAGCACACACACACAACATCATTTTAAATTCTACCAAGAATCAAATATTTTCAAAATATCAGAAGACAGAAACATTTGTCTGTGTCTCTTCATCACTCCATCTTCCGCTTGACAACATTTCTCAAAACTTTTCAAAAAGGCCTGCAATTATCTTGACAGCTGAAATTTCTTGAATTTTCTGTGAGCGTTTTAGACTTCTTATTTTTCTGAAACGACGATTTTTTCCATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATC</canonical>
            <polymorphic>TCTTTCCTAAAAAATCCAGACACCAGGAAGAAATTTTTAACTACATACCAATTTCCCTTCTAAACTAGACTTGCGTTTTCCAATCACAAAGTTCCCAATAAATAACAAAATCCCCAACAACCAAAGGTTGCCTTGTTTTCAATATTCTTTCAGCACACACACACAACATCATTTTAAATTCTACCAAGAATCAAATATTTTCAAAATATCAGAAGACAGAAACATTTGTCTGTGTCTCTTCATCACTCCATCTTCCGCTTGACAACATTTCTCAAAACTTTTCAAAAAGGCCTGCAATTATCTTGACAGCTGAAATTTCTTGAATTTTCTGTGAGCGTTTTAGACTTCTTATTTTTCTGAAACGACGATTTTTTCCATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCWTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCTGAAACTTCTCAACTGATT</pcr_primer_p1>
		<pcr_primer_p2>TTGACAGAGTTGGAAAATTAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAA</canonical_amplicon>
		<polymorphic_amplicon>CATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCWTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35289</snp_id>
        <super_contig>c009801720.Contig1</super_contig>
        <contig_pos>2111</contig_pos>
        <strand></strand>
        <context>ACTCTTGACA[C/T]CTCYATATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACA</left_flank>
        <right_flank>CTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCA</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCAGACACCAGGAAGAAATTTTTAACTACATACCAATTTCCCTTCTAAACTAGACTTGCGTTTTCCAATCACAAAGTTCCCAATAAATAACAAAATCCCCAACAACCAAAGGTTGCCTTGTTTTCAATATTCTTTCAGCACACACACACAACATCATTTTAAATTCTACCAAGAATCAAATATTTTCAAAATATCAGAAGACAGAAACATTTGTCTGTGTCTCTTCATCACTCCATCTTCCGCTTGACAACATTTCTCAAAACTTTTCAAAAAGGCCTGCAATTATCTTGACAGCTGAAATTTCTTGAATTTTCTGTGAGCGTTTTAGACTTCTTATTTTTCTGAAACGACGATTTTTTCCATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAG</canonical>
            <polymorphic>ATCCAGACACCAGGAAGAAATTTTTAACTACATACCAATTTCCCTTCTAAACTAGACTTGCGTTTTCCAATCACAAAGTTCCCAATAAATAACAAAATCCCCAACAACCAAAGGTTGCCTTGTTTTCAATATTCTTTCAGCACACACACACAACATCATTTTAAATTCTACCAAGAATCAAATATTTTCAAAATATCAGAAGACAGAAACATTTGTCTGTGTCTCTTCATCACTCCATCTTCCGCTTGACAACATTTCTCAAAACTTTTCAAAAAGGCCTGCAATTATCTTGACAGCTGAAATTTCTTGAATTTTCTGTGAGCGTTTTAGACTTCTTATTTTTCTGAAACGACGATTTTTTCCATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACAYCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>172 145 112 88 71 69 64 62 36 31 31 30 22 21 18 11 9 2 2 2 2</canonical_bands>
                <polymorphic_bands>172 145 112 88 71 69 64 62 54 31 31 30 22 21 11 9 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATCTGAAACTTCTCAACTGATT</pcr_primer_p1>
		<pcr_primer_p2>TTGACAGAGTTGGAAAATTAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAA</canonical_amplicon>
		<polymorphic_amplicon>CATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACAYCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35290</snp_id>
        <super_contig>c009801720.Contig1</super_contig>
        <contig_pos>2115</contig_pos>
        <strand></strand>
        <context>TTGACAYCTC[C/T]ATATTTATAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTC</left_flank>
        <right_flank>ATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCG</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACACCAGGAAGAAATTTTTAACTACATACCAATTTCCCTTCTAAACTAGACTTGCGTTTTCCAATCACAAAGTTCCCAATAAATAACAAAATCCCCAACAACCAAAGGTTGCCTTGTTTTCAATATTCTTTCAGCACACACACACAACATCATTTTAAATTCTACCAAGAATCAAATATTTTCAAAATATCAGAAGACAGAAACATTTGTCTGTGTCTCTTCATCACTCCATCTTCCGCTTGACAACATTTCTCAAAACTTTTCAAAAAGGCCTGCAATTATCTTGACAGCTGAAATTTCTTGAATTTTCTGTGAGCGTTTTAGACTTCTTATTTTTCTGAAACGACGATTTTTTCCATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGA</canonical>
            <polymorphic>AGACACCAGGAAGAAATTTTTAACTACATACCAATTTCCCTTCTAAACTAGACTTGCGTTTTCCAATCACAAAGTTCCCAATAAATAACAAAATCCCCAACAACCAAAGGTTGCCTTGTTTTCAATATTCTTTCAGCACACACACACAACATCATTTTAAATTCTACCAAGAATCAAATATTTTCAAAATATCAGAAGACAGAAACATTTGTCTGTGTCTCTTCATCACTCCATCTTCCGCTTGACAACATTTCTCAAAACTTTTCAAAAAGGCCTGCAATTATCTTGACAGCTGAAATTTCTTGAATTTTCTGTGAGCGTTTTAGACTTCTTATTTTTCTGAAACGACGATTTTTTCCATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCYATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCTGAAACTTCTCAACTGATT</pcr_primer_p1>
		<pcr_primer_p2>TTGACAGAGTTGGAAAATTAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAA</canonical_amplicon>
		<polymorphic_amplicon>CATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCYATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35291</snp_id>
        <super_contig>c009801720.Contig1</super_contig>
        <contig_pos>2157</contig_pos>
        <strand></strand>
        <context>GTGCTGTCTC[A/G]ATCATTCRAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTC</left_flank>
        <right_flank>ATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAAACTAGACTTGCGTTTTCCAATCACAAAGTTCCCAATAAATAACAAAATCCCCAACAACCAAAGGTTGCCTTGTTTTCAATATTCTTTCAGCACACACACACAACATCATTTTAAATTCTACCAAGAATCAAATATTTTCAAAATATCAGAAGACAGAAACATTTGTCTGTGTCTCTTCATCACTCCATCTTCCGCTTGACAACATTTCTCAAAACTTTTCAAAAAGGCCTGCAATTATCTTGACAGCTGAAATTTCTTGAATTTTCTGTGAGCGTTTTAGACTTCTTATTTTTCTGAAACGACGATTTTTTCCATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAGAGAGCACATACATAAAATAAGAAGCAAA</canonical>
            <polymorphic>CTAAACTAGACTTGCGTTTTCCAATCACAAAGTTCCCAATAAATAACAAAATCCCCAACAACCAAAGGTTGCCTTGTTTTCAATATTCTTTCAGCACACACACACAACATCATTTTAAATTCTACCAAGAATCAAATATTTTCAAAATATCAGAAGACAGAAACATTTGTCTGTGTCTCTTCATCACTCCATCTTCCGCTTGACAACATTTCTCAAAACTTTTCAAAAAGGCCTGCAATTATCTTGACAGCTGAAATTTCTTGAATTTTCTGTGAGCGTTTTAGACTTCTTATTTTTCTGAAACGACGATTTTTTCCATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCRATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAGAGAGCACATACATAAAATAAGAAGCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCTGAAACTTCTCAACTGATT</pcr_primer_p1>
		<pcr_primer_p2>TTGACAGAGTTGGAAAATTAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAA</canonical_amplicon>
		<polymorphic_amplicon>CATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCRATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35292</snp_id>
        <super_contig>c009801720.Contig1</super_contig>
        <contig_pos>2165</contig_pos>
        <strand></strand>
        <context>TCRATCATTC[G/A]AACATCAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTC</left_flank>
        <right_flank>AACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAAC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACTTGCGTTTTCCAATCACAAAGTTCCCAATAAATAACAAAATCCCCAACAACCAAAGGTTGCCTTGTTTTCAATATTCTTTCAGCACACACACACAACATCATTTTAAATTCTACCAAGAATCAAATATTTTCAAAATATCAGAAGACAGAAACATTTGTCTGTGTCTCTTCATCACTCCATCTTCCGCTTGACAACATTTCTCAAAACTTTTCAAAAAGGCCTGCAATTATCTTGACAGCTGAAATTTCTTGAATTTTCTGTGAGCGTTTTAGACTTCTTATTTTTCTGAAACGACGATTTTTTCCATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAGAGAGCACATACATAAAATAAGAAGCAAAAATTTTGA</canonical>
            <polymorphic>GACTTGCGTTTTCCAATCACAAAGTTCCCAATAAATAACAAAATCCCCAACAACCAAAGGTTGCCTTGTTTTCAATATTCTTTCAGCACACACACACAACATCATTTTAAATTCTACCAAGAATCAAATATTTTCAAAATATCAGAAGACAGAAACATTTGTCTGTGTCTCTTCATCACTCCATCTTCCGCTTGACAACATTTCTCAAAACTTTTCAAAAAGGCCTGCAATTATCTTGACAGCTGAAATTTCTTGAATTTTCTGTGAGCGTTTTAGACTTCTTATTTTTCTGAAACGACGATTTTTTCCATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCRAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAGAGAGCACATACATAAAATAAGAAGCAAAAATTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 387 114</canonical_bands>
                <polymorphic_bands>613 387</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATCTGAAACTTCTCAACTGATT</pcr_primer_p1>
		<pcr_primer_p2>TTGACAGAGTTGGAAAATTAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAA</canonical_amplicon>
		<polymorphic_amplicon>CATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCRAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35293</snp_id>
        <super_contig>c009801720.Contig1</super_contig>
        <contig_pos>2177</contig_pos>
        <strand></strand>
        <context>ACATCAAAAT[C/T]YTTCCATATM</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAAT</left_flank>
        <right_flank>CTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGG</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAATCACAAAGTTCCCAATAAATAACAAAATCCCCAACAACCAAAGGTTGCCTTGTTTTCAATATTCTTTCAGCACACACACACAACATCATTTTAAATTCTACCAAGAATCAAATATTTTCAAAATATCAGAAGACAGAAACATTTGTCTGTGTCTCTTCATCACTCCATCTTCCGCTTGACAACATTTCTCAAAACTTTTCAAAAAGGCCTGCAATTATCTTGACAGCTGAAATTTCTTGAATTTTCTGTGAGCGTTTTAGACTTCTTATTTTTCTGAAACGACGATTTTTTCCATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAGAGAGCACATACATAAAATAAGAAGCAAAAATTTTGAAAACCTCTAAAT</canonical>
            <polymorphic>CCAATCACAAAGTTCCCAATAAATAACAAAATCCCCAACAACCAAAGGTTGCCTTGTTTTCAATATTCTTTCAGCACACACACACAACATCATTTTAAATTCTACCAAGAATCAAATATTTTCAAAATATCAGAAGACAGAAACATTTGTCTGTGTCTCTTCATCACTCCATCTTCCGCTTGACAACATTTCTCAAAACTTTTCAAAAAGGCCTGCAATTATCTTGACAGCTGAAATTTCTTGAATTTTCTGTGAGCGTTTTAGACTTCTTATTTTTCTGAAACGACGATTTTTTCCATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATYCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAGAGAGCACATACATAAAATAAGAAGCAAAAATTTTGAAAACCTCTAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATGGAACTTATGAGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>GAGATATGGGAATAGGAAGTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTC</canonical_amplicon>
		<polymorphic_amplicon>CAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATYCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35294</snp_id>
        <super_contig>c009801720.Contig1</super_contig>
        <contig_pos>2178</contig_pos>
        <strand></strand>
        <context>CATCAAAATY[C/T]TTCCATATMA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATC</left_flank>
        <right_flank>TTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATCACAAAGTTCCCAATAAATAACAAAATCCCCAACAACCAAAGGTTGCCTTGTTTTCAATATTCTTTCAGCACACACACACAACATCATTTTAAATTCTACCAAGAATCAAATATTTTCAAAATATCAGAAGACAGAAACATTTGTCTGTGTCTCTTCATCACTCCATCTTCCGCTTGACAACATTTCTCAAAACTTTTCAAAAAGGCCTGCAATTATCTTGACAGCTGAAATTTCTTGAATTTTCTGTGAGCGTTTTAGACTTCTTATTTTTCTGAAACGACGATTTTTTCCATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAGAGAGCACATACATAAAATAAGAAGCAAAAATTTTGAAAACCTCTAAATC</canonical>
            <polymorphic>CAATCACAAAGTTCCCAATAAATAACAAAATCCCCAACAACCAAAGGTTGCCTTGTTTTCAATATTCTTTCAGCACACACACACAACATCATTTTAAATTCTACCAAGAATCAAATATTTTCAAAATATCAGAAGACAGAAACATTTGTCTGTGTCTCTTCATCACTCCATCTTCCGCTTGACAACATTTCTCAAAACTTTTCAAAAAGGCCTGCAATTATCTTGACAGCTGAAATTTCTTGAATTTTCTGTGAGCGTTTTAGACTTCTTATTTTTCTGAAACGACGATTTTTTCCATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCYTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAGAGAGCACATACATAAAATAAGAAGCAAAAATTTTGAAAACCTCTAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATGGAACTTATGAGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>GAGATATGGGAATAGGAAGTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTC</canonical_amplicon>
		<polymorphic_amplicon>CAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCYTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35295</snp_id>
        <super_contig>c009801720.Contig1</super_contig>
        <contig_pos>2187</contig_pos>
        <strand></strand>
        <context>YYTTCCATAT[A/C]AATCTCCGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATAT</left_flank>
        <right_flank>AATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTCCCAATAAATAACAAAATCCCCAACAACCAAAGGTTGCCTTGTTTTCAATATTCTTTCAGCACACACACACAACATCATTTTAAATTCTACCAAGAATCAAATATTTTCAAAATATCAGAAGACAGAAACATTTGTCTGTGTCTCTTCATCACTCCATCTTCCGCTTGACAACATTTCTCAAAACTTTTCAAAAAGGCCTGCAATTATCTTGACAGCTGAAATTTCTTGAATTTTCTGTGAGCGTTTTAGACTTCTTATTTTTCTGAAACGACGATTTTTTCCATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAGAGAGCACATACATAAAATAAGAAGCAAAAATTTTGAAAACCTCTAAATCTCTTTGTAC</canonical>
            <polymorphic>AGTTCCCAATAAATAACAAAATCCCCAACAACCAAAGGTTGCCTTGTTTTCAATATTCTTTCAGCACACACACACAACATCATTTTAAATTCTACCAAGAATCAAATATTTTCAAAATATCAGAAGACAGAAACATTTGTCTGTGTCTCTTCATCACTCCATCTTCCGCTTGACAACATTTCTCAAAACTTTTCAAAAAGGCCTGCAATTATCTTGACAGCTGAAATTTCTTGAATTTTCTGTGAGCGTTTTAGACTTCTTATTTTTCTGAAACGACGATTTTTTCCATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATMAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAGAGAGCACATACATAAAATAAGAAGCAAAAATTTTGAAAACCTCTAAATCTCTTTGTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATGGAACTTATGAGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>GAGATATGGGAATAGGAAGTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTC</canonical_amplicon>
		<polymorphic_amplicon>CAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATMAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35296</snp_id>
        <super_contig>c009801720.Contig1</super_contig>
        <contig_pos>2199</contig_pos>
        <strand></strand>
        <context>ATCTCCGAAT[A/T]ATCCTAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAAT</left_flank>
        <right_flank>ATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTA</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAACAAAATCCCCAACAACCAAAGGTTGCCTTGTTTTCAATATTCTTTCAGCACACACACACAACATCATTTTAAATTCTACCAAGAATCAAATATTTTCAAAATATCAGAAGACAGAAACATTTGTCTGTGTCTCTTCATCACTCCATCTTCCGCTTGACAACATTTCTCAAAACTTTTCAAAAAGGCCTGCAATTATCTTGACAGCTGAAATTTCTTGAATTTTCTGTGAGCGTTTTAGACTTCTTATTTTTCTGAAACGACGATTTTTTCCATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAGAGAGCACATACATAAAATAAGAAGCAAAAATTTTGAAAACCTCTAAATCTCTTTGTACTAATGCAAATTC</canonical>
            <polymorphic>ATAACAAAATCCCCAACAACCAAAGGTTGCCTTGTTTTCAATATTCTTTCAGCACACACACACAACATCATTTTAAATTCTACCAAGAATCAAATATTTTCAAAATATCAGAAGACAGAAACATTTGTCTGTGTCTCTTCATCACTCCATCTTCCGCTTGACAACATTTCTCAAAACTTTTCAAAAAGGCCTGCAATTATCTTGACAGCTGAAATTTCTTGAATTTTCTGTGAGCGTTTTAGACTTCTTATTTTTCTGAAACGACGATTTTTTCCATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATWATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAGAGAGCACATACATAAAATAAGAAGCAAAAATTTTGAAAACCTCTAAATCTCTTTGTACTAATGCAAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATGGAACTTATGAGCTTTG</pcr_primer_p1>
		<pcr_primer_p2>GAGATATGGGAATAGGAAGTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTC</canonical_amplicon>
		<polymorphic_amplicon>CAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATWATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35297</snp_id>
        <super_contig>c009801720.Contig1</super_contig>
        <contig_pos>2302</contig_pos>
        <strand></strand>
        <context>TCACCGTAAA[C/A]TTTATCATCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAA</left_flank>
        <right_flank>TTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATATCAGAAGACAGAAACATTTGTCTGTGTCTCTTCATCACTCCATCTTCCGCTTGACAACATTTCTCAAAACTTTTCAAAAAGGCCTGCAATTATCTTGACAGCTGAAATTTCTTGAATTTTCTGTGAGCGTTTTAGACTTCTTATTTTTCTGAAACGACGATTTTTTCCATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAGAGAGCACATACATAAAATAAGAAGCAAAAATTTTGAAAACCTCTAAATCTCTTTGTACTAATGCAAATTCTCTAATAATAACCCAAAAATTGAATTTTTAGTTGAATTACCAAATTTGCTCTAGAATGTCACCCTATACTTTGAGCTCAATTATTTCGGTTCCTATATATATA</canonical>
            <polymorphic>AATATCAGAAGACAGAAACATTTGTCTGTGTCTCTTCATCACTCCATCTTCCGCTTGACAACATTTCTCAAAACTTTTCAAAAAGGCCTGCAATTATCTTGACAGCTGAAATTTCTTGAATTTTCTGTGAGCGTTTTAGACTTCTTATTTTTCTGAAACGACGATTTTTTCCATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAAMTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAGAGAGCACATACATAAAATAAGAAGCAAAAATTTTGAAAACCTCTAAATCTCTTTGTACTAATGCAAATTCTCTAATAATAACCCAAAAATTGAATTTTTAGTTGAATTACCAAATTTGCTCTAGAATGTCACCCTATACTTTGAGCTCAATTATTTCGGTTCCTATATATATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>497 310 97 96</canonical_bands>
                <polymorphic_bands>594 310 96</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTACTTCCTATTCCCATATCTC</pcr_primer_p1>
		<pcr_primer_p2>CGTCAACCTTAAGGATATTTACC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACG</canonical_amplicon>
		<polymorphic_amplicon>GCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAAMTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35298</snp_id>
        <super_contig>c009801720.Contig1</super_contig>
        <contig_pos>2379</contig_pos>
        <strand></strand>
        <context>GGCCATTGTT[C/T]TTTGGTGGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTT</left_flank>
        <right_flank>TTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAAAGGCCTGCAATTATCTTGACAGCTGAAATTTCTTGAATTTTCTGTGAGCGTTTTAGACTTCTTATTTTTCTGAAACGACGATTTTTTCCATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAGAGAGCACATACATAAAATAAGAAGCAAAAATTTTGAAAACCTCTAAATCTCTTTGTACTAATGCAAATTCTCTAATAATAACCCAAAAATTGAATTTTTAGTTGAATTACCAAATTTGCTCTAGAATGTCACCCTATACTTTGAGCTCAATTATTTCGGTTCCTATATATATATCAAAAATTTGTCAAATTTTAAAATGTTGGTGATATTATAAAAAAATCTTTTGTCAGTTAACAGGGTTTTTGATATC</canonical>
            <polymorphic>TCAAAAAGGCCTGCAATTATCTTGACAGCTGAAATTTCTTGAATTTTCTGTGAGCGTTTTAGACTTCTTATTTTTCTGAAACGACGATTTTTTCCATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTYTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAGAGAGCACATACATAAAATAAGAAGCAAAAATTTTGAAAACCTCTAAATCTCTTTGTACTAATGCAAATTCTCTAATAATAACCCAAAAATTGAATTTTTAGTTGAATTACCAAATTTGCTCTAGAATGTCACCCTATACTTTGAGCTCAATTATTTCGGTTCCTATATATATATCAAAAATTTGTCAAATTTTAAAATGTTGGTGATATTATAAAAAAATCTTTTGTCAGTTAACAGGGTTTTTGATATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTACTTCCTATTCCCATATCTC</pcr_primer_p1>
		<pcr_primer_p2>CGTCAACCTTAAGGATATTTACC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACG</canonical_amplicon>
		<polymorphic_amplicon>GCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTYTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35299</snp_id>
        <super_contig>c009801720.Contig1</super_contig>
        <contig_pos>2472</contig_pos>
        <strand></strand>
        <context>CATTTTATTT[G/A]AGGTAAATAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTT</left_flank>
        <right_flank>AGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAGAGAGCACATACATAAAATAAGAAGCAAAAATTTTGAAAACCTCTAAATCTCTTTGTACTAATGCAAATTCTCTAATAATAACCCAAAAATTGAATTTTTAGTTGAATTACCAAATTTGCTCTAGAATGTCACCCTATACTTTGAGCTCAATTATTTCGGTTCCTATATATATATCAAAAATTTGTCAAATTTTAAAATGTTGGTGATATTATAAAAAAATCTTTTGTCAGTTAACAGGGTTTTTGATATCTTTTACAGAAGCTGAGATAATTGAGTTCAAAGTGTAATGCTCTAATACAAGCCCACCCTATACGTGCACTTGGAGGCTAATTATCTCGGTTCC</canonical>
            <polymorphic>CCATCTGAAACTTCTCAACTGATTAAGATAAAATGATATTCCTTATCAATGGAACTTATGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTRAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAGAGAGCACATACATAAAATAAGAAGCAAAAATTTTGAAAACCTCTAAATCTCTTTGTACTAATGCAAATTCTCTAATAATAACCCAAAAATTGAATTTTTAGTTGAATTACCAAATTTGCTCTAGAATGTCACCCTATACTTTGAGCTCAATTATTTCGGTTCCTATATATATATCAAAAATTTGTCAAATTTTAAAATGTTGGTGATATTATAAAAAAATCTTTTGTCAGTTAACAGGGTTTTTGATATCTTTTACAGAAGCTGAGATAATTGAGTTCAAAGTGTAATGCTCTAATACAAGCCCACCCTATACGTGCACTTGGAGGCTAATTATCTCGGTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTGGATTTTTGTATACTCAT</pcr_primer_p1>
		<pcr_primer_p2>CTAACAGCTGATTTTCCACTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAG</canonical_amplicon>
		<polymorphic_amplicon>TTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTRAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35300</snp_id>
        <super_contig>c009801720.Contig1</super_contig>
        <contig_pos>2530</contig_pos>
        <strand></strand>
        <context>GGGTTTTCAT[G/A]GAGGAAGTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCAT</left_flank>
        <right_flank>GAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAGAGAGCACATACATAAAATAAGAAGCAAAAATTTTGAAAACCTCTAAATCTCTTTGTACTAATGCAAATTCTCTAATAATAACCCAAAAATTGAATTTTTAGTTGAATTACCAAATTTGCTCTAGAATGTCACCCTATACTTTGAGCTCAATTATTTCGGTTCCTATATATATATCAAAAATTTGTCAAATTTTAAAATGTTGGTGATATTATAAAAAAATCTTTTGTCAGTTAACAGGGTTTTTGATATCTTTTACAGAAGCTGAGATAATTGAGTTCAAAGTGTAATGCTCTAATACAAGCCCACCCTATACGTGCACTTGGAGGCTAATTATCTCGGTTCCTATCAGGGATATAAAAAATTTGCCAACGGATAAACTAGTGATAATGTTTAGAGAAACA</canonical>
            <polymorphic>TGAGCTTTGGGTGGCGATTCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATRGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAGAGAGCACATACATAAAATAAGAAGCAAAAATTTTGAAAACCTCTAAATCTCTTTGTACTAATGCAAATTCTCTAATAATAACCCAAAAATTGAATTTTTAGTTGAATTACCAAATTTGCTCTAGAATGTCACCCTATACTTTGAGCTCAATTATTTCGGTTCCTATATATATATCAAAAATTTGTCAAATTTTAAAATGTTGGTGATATTATAAAAAAATCTTTTGTCAGTTAACAGGGTTTTTGATATCTTTTACAGAAGCTGAGATAATTGAGTTCAAAGTGTAATGCTCTAATACAAGCCCACCCTATACGTGCACTTGGAGGCTAATTATCTCGGTTCCTATCAGGGATATAAAAAATTTGCCAACGGATAAACTAGTGATAATGTTTAGAGAAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>485 209 176 112 18</canonical_bands>
                <polymorphic_bands>485 209 194 112</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGTGGATTTTTGTATACTCAT</pcr_primer_p1>
		<pcr_primer_p2>CTAACAGCTGATTTTCCACTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAG</canonical_amplicon>
		<polymorphic_amplicon>TTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATRGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35301</snp_id>
        <super_contig>c009801720.Contig1</super_contig>
        <contig_pos>2548</contig_pos>
        <strand></strand>
        <context>TAATTTTCAT[G/T]TATTGATCTY</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCAT</left_flank>
        <right_flank>TATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAGAGAGCACATACATAAAATAAGAAGCAAAAATTTTGAAAACCTCTAAATCTCTTTGTACTAATGCAAATTCTCTAATAATAACCCAAAAATTGAATTTTTAGTTGAATTACCAAATTTGCTCTAGAATGTCACCCTATACTTTGAGCTCAATTATTTCGGTTCCTATATATATATCAAAAATTTGTCAAATTTTAAAATGTTGGTGATATTATAAAAAAATCTTTTGTCAGTTAACAGGGTTTTTGATATCTTTTACAGAAGCTGAGATAATTGAGTTCAAAGTGTAATGCTCTAATACAAGCCCACCCTATACGTGCACTTGGAGGCTAATTATCTCGGTTCCTATCAGGGATATAAAAAATTTGCCAACGGATAAACTAGTGATAATGTTTAGAGAAACATTTTATCAGTTAACTGAT</canonical>
            <polymorphic>TCCAATCCTAAACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATKTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAGAGAGCACATACATAAAATAAGAAGCAAAAATTTTGAAAACCTCTAAATCTCTTTGTACTAATGCAAATTCTCTAATAATAACCCAAAAATTGAATTTTTAGTTGAATTACCAAATTTGCTCTAGAATGTCACCCTATACTTTGAGCTCAATTATTTCGGTTCCTATATATATATCAAAAATTTGTCAAATTTTAAAATGTTGGTGATATTATAAAAAAATCTTTTGTCAGTTAACAGGGTTTTTGATATCTTTTACAGAAGCTGAGATAATTGAGTTCAAAGTGTAATGCTCTAATACAAGCCCACCCTATACGTGCACTTGGAGGCTAATTATCTCGGTTCCTATCAGGGATATAAAAAATTTGCCAACGGATAAACTAGTGATAATGTTTAGAGAAACATTTTATCAGTTAACTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 209 176 94 18</canonical_bands>
                <polymorphic_bands>521 209 176 94</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGTGGATTTTTGTATACTCAT</pcr_primer_p1>
		<pcr_primer_p2>CTAACAGCTGATTTTCCACTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAG</canonical_amplicon>
		<polymorphic_amplicon>TTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATKTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35302</snp_id>
        <super_contig>c009801720.Contig1</super_contig>
        <contig_pos>2558</contig_pos>
        <strand></strand>
        <context>KTATTGATCT[T/C]GWTCATTATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCT</left_flank>
        <right_flank>GTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGA</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAGAGAGCACATACATAAAATAAGAAGCAAAAATTTTGAAAACCTCTAAATCTCTTTGTACTAATGCAAATTCTCTAATAATAACCCAAAAATTGAATTTTTAGTTGAATTACCAAATTTGCTCTAGAATGTCACCCTATACTTTGAGCTCAATTATTTCGGTTCCTATATATATATCAAAAATTTGTCAAATTTTAAAATGTTGGTGATATTATAAAAAAATCTTTTGTCAGTTAACAGGGTTTTTGATATCTTTTACAGAAGCTGAGATAATTGAGTTCAAAGTGTAATGCTCTAATACAAGCCCACCCTATACGTGCACTTGGAGGCTAATTATCTCGGTTCCTATCAGGGATATAAAAAATTTGCCAACGGATAAACTAGTGATAATGTTTAGAGAAACATTTTATCAGTTAACTGATTTTTGATATT</canonical>
            <polymorphic>AACAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTYGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAGAGAGCACATACATAAAATAAGAAGCAAAAATTTTGAAAACCTCTAAATCTCTTTGTACTAATGCAAATTCTCTAATAATAACCCAAAAATTGAATTTTTAGTTGAATTACCAAATTTGCTCTAGAATGTCACCCTATACTTTGAGCTCAATTATTTCGGTTCCTATATATATATCAAAAATTTGTCAAATTTTAAAATGTTGGTGATATTATAAAAAAATCTTTTGTCAGTTAACAGGGTTTTTGATATCTTTTACAGAAGCTGAGATAATTGAGTTCAAAGTGTAATGCTCTAATACAAGCCCACCCTATACGTGCACTTGGAGGCTAATTATCTCGGTTCCTATCAGGGATATAAAAAATTTGCCAACGGATAAACTAGTGATAATGTTTAGAGAAACATTTTATCAGTTAACTGATTTTTGATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTGGATTTTTGTATACTCAT</pcr_primer_p1>
		<pcr_primer_p2>CTAACAGCTGATTTTCCACTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAG</canonical_amplicon>
		<polymorphic_amplicon>TTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTYGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35303</snp_id>
        <super_contig>c009801720.Contig1</super_contig>
        <contig_pos>2560</contig_pos>
        <strand></strand>
        <context>ATTGATCTYG[T/A]TCATTATTKR</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTG</left_flank>
        <right_flank>TCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGA</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAGAGAGCACATACATAAAATAAGAAGCAAAAATTTTGAAAACCTCTAAATCTCTTTGTACTAATGCAAATTCTCTAATAATAACCCAAAAATTGAATTTTTAGTTGAATTACCAAATTTGCTCTAGAATGTCACCCTATACTTTGAGCTCAATTATTTCGGTTCCTATATATATATCAAAAATTTGTCAAATTTTAAAATGTTGGTGATATTATAAAAAAATCTTTTGTCAGTTAACAGGGTTTTTGATATCTTTTACAGAAGCTGAGATAATTGAGTTCAAAGTGTAATGCTCTAATACAAGCCCACCCTATACGTGCACTTGGAGGCTAATTATCTCGGTTCCTATCAGGGATATAAAAAATTTGCCAACGGATAAACTAGTGATAATGTTTAGAGAAACATTTTATCAGTTAACTGATTTTTGATATTTC</canonical>
            <polymorphic>CAAATCTCTCTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGWTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAGAGAGCACATACATAAAATAAGAAGCAAAAATTTTGAAAACCTCTAAATCTCTTTGTACTAATGCAAATTCTCTAATAATAACCCAAAAATTGAATTTTTAGTTGAATTACCAAATTTGCTCTAGAATGTCACCCTATACTTTGAGCTCAATTATTTCGGTTCCTATATATATATCAAAAATTTGTCAAATTTTAAAATGTTGGTGATATTATAAAAAAATCTTTTGTCAGTTAACAGGGTTTTTGATATCTTTTACAGAAGCTGAGATAATTGAGTTCAAAGTGTAATGCTCTAATACAAGCCCACCCTATACGTGCACTTGGAGGCTAATTATCTCGGTTCCTATCAGGGATATAAAAAATTTGCCAACGGATAAACTAGTGATAATGTTTAGAGAAACATTTTATCAGTTAACTGATTTTTGATATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTGGATTTTTGTATACTCAT</pcr_primer_p1>
		<pcr_primer_p2>CTAACAGCTGATTTTCCACTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAG</canonical_amplicon>
		<polymorphic_amplicon>TTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGWTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35304</snp_id>
        <super_contig>c009801720.Contig1</super_contig>
        <contig_pos>2569</contig_pos>
        <strand></strand>
        <context>GWTCATTATT[G/T]RAGAACTACG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATT</left_flank>
        <right_flank>AAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAGAGAGCACATACATAAAATAAGAAGCAAAAATTTTGAAAACCTCTAAATCTCTTTGTACTAATGCAAATTCTCTAATAATAACCCAAAAATTGAATTTTTAGTTGAATTACCAAATTTGCTCTAGAATGTCACCCTATACTTTGAGCTCAATTATTTCGGTTCCTATATATATATCAAAAATTTGTCAAATTTTAAAATGTTGGTGATATTATAAAAAAATCTTTTGTCAGTTAACAGGGTTTTTGATATCTTTTACAGAAGCTGAGATAATTGAGTTCAAAGTGTAATGCTCTAATACAAGCCCACCCTATACGTGCACTTGGAGGCTAATTATCTCGGTTCCTATCAGGGATATAAAAAATTTGCCAACGGATAAACTAGTGATAATGTTTAGAGAAACATTTTATCAGTTAACTGATTTTTGATATTTCTCACAGAAA</canonical>
            <polymorphic>CTACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTKAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAGAGAGCACATACATAAAATAAGAAGCAAAAATTTTGAAAACCTCTAAATCTCTTTGTACTAATGCAAATTCTCTAATAATAACCCAAAAATTGAATTTTTAGTTGAATTACCAAATTTGCTCTAGAATGTCACCCTATACTTTGAGCTCAATTATTTCGGTTCCTATATATATATCAAAAATTTGTCAAATTTTAAAATGTTGGTGATATTATAAAAAAATCTTTTGTCAGTTAACAGGGTTTTTGATATCTTTTACAGAAGCTGAGATAATTGAGTTCAAAGTGTAATGCTCTAATACAAGCCCACCCTATACGTGCACTTGGAGGCTAATTATCTCGGTTCCTATCAGGGATATAAAAAATTTGCCAACGGATAAACTAGTGATAATGTTTAGAGAAACATTTTATCAGTTAACTGATTTTTGATATTTCTCACAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTGGATTTTTGTATACTCAT</pcr_primer_p1>
		<pcr_primer_p2>CTAACAGCTGATTTTCCACTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAG</canonical_amplicon>
		<polymorphic_amplicon>TTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTKAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35305</snp_id>
        <super_contig>c009801720.Contig1</super_contig>
        <contig_pos>2570</contig_pos>
        <strand></strand>
        <context>WTCATTATTK[A/G]AGAACTACGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTG</left_flank>
        <right_flank>AGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAGAGAGCACATACATAAAATAAGAAGCAAAAATTTTGAAAACCTCTAAATCTCTTTGTACTAATGCAAATTCTCTAATAATAACCCAAAAATTGAATTTTTAGTTGAATTACCAAATTTGCTCTAGAATGTCACCCTATACTTTGAGCTCAATTATTTCGGTTCCTATATATATATCAAAAATTTGTCAAATTTTAAAATGTTGGTGATATTATAAAAAAATCTTTTGTCAGTTAACAGGGTTTTTGATATCTTTTACAGAAGCTGAGATAATTGAGTTCAAAGTGTAATGCTCTAATACAAGCCCACCCTATACGTGCACTTGGAGGCTAATTATCTCGGTTCCTATCAGGGATATAAAAAATTTGCCAACGGATAAACTAGTGATAATGTTTAGAGAAACATTTTATCAGTTAACTGATTTTTGATATTTCTCACAGAAAT</canonical>
            <polymorphic>TACACTTCTTGGAAATATCCATATGTCTTGACTCTTGACACCTCCATATTTATAATCACTATTCTCCTTGTCATGCGTGCTGTCTCAATCATTCGAACATCAAAATCCTTCCATATAAATCTCCGAATAATCCTAATTTTCCAACTCTGTCAATGGGTTCAAATCTTGCTCGCCCGCTACTTCCTATTCCCATATCTCGTTGGATATCGATTTCTTGGAGATCACCGTAAACTTTATCATCATTTTTGGACAGATAGTCTAGAGGAAACTGTTCCCATTCCATGTGTTATTGAGGAATGGCCATTGTTCTTTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGRAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAGAGAGCACATACATAAAATAAGAAGCAAAAATTTTGAAAACCTCTAAATCTCTTTGTACTAATGCAAATTCTCTAATAATAACCCAAAAATTGAATTTTTAGTTGAATTACCAAATTTGCTCTAGAATGTCACCCTATACTTTGAGCTCAATTATTTCGGTTCCTATATATATATCAAAAATTTGTCAAATTTTAAAATGTTGGTGATATTATAAAAAAATCTTTTGTCAGTTAACAGGGTTTTTGATATCTTTTACAGAAGCTGAGATAATTGAGTTCAAAGTGTAATGCTCTAATACAAGCCCACCCTATACGTGCACTTGGAGGCTAATTATCTCGGTTCCTATCAGGGATATAAAAAATTTGCCAACGGATAAACTAGTGATAATGTTTAGAGAAACATTTTATCAGTTAACTGATTTTTGATATTTCTCACAGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTGGATTTTTGTATACTCAT</pcr_primer_p1>
		<pcr_primer_p2>CTAACAGCTGATTTTCCACTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGAAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAG</canonical_amplicon>
		<polymorphic_amplicon>TTGGTGGATTTTTGTATACTCATCATTTTGCCTCGTGCATATTTTTCCTGTTCTCGGTGTCTGCTGAAAGGGCAATAGCGTCATTTTATTTGAGGTAAATATCCTTAAGGTTGACGATGAAGATGTTTTGCGTTTAAGGGGGTTTTCATGGAGGAAGTAATTTTCATGTATTGATCTTGTTCATTATTGRAGAACTACGTAATAGATACGAAAAAATCAGCTGTTAGAGAGTGGAAAATCAGCTGTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35306</snp_id>
        <super_contig>c009801781.Contig1</super_contig>
        <contig_pos>13456</contig_pos>
        <strand></strand>
        <context>TTCTCCTGGT[T/G]CCAAGGCTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATTTCCGAAATTTCGGAAAAGAATTCCCTCCAATTTGAATTTCTCCTGGT</left_flank>
        <right_flank>CCAAGGCTTCTCTGGATGATTTATCCTTGATTTGTTCCTGATTTTCTAGA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGAGCCATAGTTCTTCGTCGTCTTCCTCGTCTTCTTCATCAGAATCATCGTCAGAATCTAAATTCTCAGAATCCTCATCATGAACTCCCCAAATTTCCACATTCTGTGCTGTTCGAAAAACTAGATTATGGAGATTATGGAGCTGCGCATTTTCCAGTTTCAAAGTCTCCAATGGCAAACATGAGGGATCTAGAATTGGAAGAATCTCTTCGAAATCCGTCCTCTCGGAGTTAAGAGTTTTAACCCAGATTTTCAGATTCTCAGGGAGTCTTAAAATATCTCCCTTCTTCAAATCCAACACCAACTCATCTGCCACTTTAATAGGGGTTTTTCGTCCACCCAGTAAGAAGTTGAACAACTTTTTCAAAGCCATATGGATTTCTAGGTTCTGCGGAAGCTTTCGAACAGTTTCATCTCCAAATTCATTTACAATTCGAAGTTTAACAAATTTCCGAAATTTCGGAAAAGAATTCCCTCCAATTTGAATTTCTCCTGGTTCCAAGGCTTCTCTGGATGATTTATCCTTGATTTGTTCCTGATTTTCTAGATATTTTTGTTTACAATGGCTTAGGATGTAGTAGGTGTCGTTGATTTGGATACTGTTGGTCCGGAATTCTAGAAAAGCTAGGCGAAGTGTTGTAGATTTGTCGATGGCATGGAGAGAGGGGCATCGGGAGGTTAGATCGATTCTGAAAATCACATTTTTGAGCTTCAAATCAAGTTTAAGTACGCGAGAATAGCTGGAAACTTGAAATTTTCGATATTCGGGAAATCAAGTGTTATGCCAAAACTCAAAACTGAATGATTTTTCAAGATCGACGTTAATATTTTTAGATTTATCATGTTTTCGGCTTTAAAATAAGCCTAATCATGCCTAGAATCGGTCAACTTTCAAATTTGTTGCCTAACACGCGACGCACGACCGCGTCGCACCCCAAAAAAGAAGGAGAGCAAATCTAGCCGTGTTTAGGCTCATTCTGAAGCTCTAAACGTAAGGA</canonical>
            <polymorphic>CGAGAGCCATAGTTCTTCGTCGTCTTCCTCGTCTTCTTCATCAGAATCATCGTCAGAATCTAAATTCTCAGAATCCTCATCATGAACTCCCCAAATTTCCACATTCTGTGCTGTTCGAAAAACTAGATTATGGAGATTATGGAGCTGCGCATTTTCCAGTTTCAAAGTCTCCAATGGCAAACATGAGGGATCTAGAATTGGAAGAATCTCTTCGAAATCCGTCCTCTCGGAGTTAAGAGTTTTAACCCAGATTTTCAGATTCTCAGGGAGTCTTAAAATATCTCCCTTCTTCAAATCCAACACCAACTCATCTGCCACTTTAATAGGGGTTTTTCGTCCACCCAGTAAGAAGTTGAACAACTTTTTCAAAGCCATATGGATTTCTAGGTTCTGCGGAAGCTTTCGAACAGTTTCATCTCCAAATTCATTTACAATTCGAAGTTTAACAAATTTCCGAAATTTCGGAAAAGAATTCCCTCCAATTTGAATTTCTCCTGGTKCCAAGGCTTCTCTGGATGATTTATCCTTGATTTGTTCCTGATTTTCTAGATATTTTTGTTTACAATGGCTTAGGATGTAGTAGGTGTCGTTGATTTGGATACTGTTGGTCCGGAATTCTAGAAAAGCTAGGCGAAGTGTTGTAGATTTGTCGATGGCATGGAGAGAGGGGCATCGGGAGGTTAGATCGATTCTGAAAATCACATTTTTGAGCTTCAAATCAAGTTTAAGTACGCGAGAATAGCTGGAAACTTGAAATTTTCGATATTCGGGAAATCAAGTGTTATGCCAAAACTCAAAACTGAATGATTTTTCAAGATCGACGTTAATATTTTTAGATTTATCATGTTTTCGGCTTTAAAATAAGCCTAATCATGCCTAGAATCGGTCAACTTTCAAATTTGTTGCCTAACACGCGACGCACGACCGCGTCGCACCCCAAAAAAGAAGGAGAGCAAATCTAGCCGTGTTTAGGCTCATTCTGAAGCTCTAAACGTAAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGTTTCATCTCCAAATTCAT</pcr_primer_p1>
		<pcr_primer_p2>CATCGACAAATCTACAACACTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAGTTTCATCTCCAAATTCATTTACAATTCGAAGTTTAACAAATTTCCGAAATTTCGGAAAAGAATTCCCTCCAATTTGAATTTCTCCTGGTTCCAAGGCTTCTCTGGATGATTTATCCTTGATTTGTTCCTGATTTTCTAGATATTTTTGTTTACAATGGCTTAGGATGTAGTAGGTGTCGTTGATTTGGATACTGTTGGTCCGGAATTCTAGAAAAGCTAGGCGAAGTGTTGTAGATTTGTCGATG</canonical_amplicon>
		<polymorphic_amplicon>ACAGTTTCATCTCCAAATTCATTTACAATTCGAAGTTTAACAAATTTCCGAAATTTCGGAAAAGAATTCCCTCCAATTTGAATTTCTCCTGGTKCCAAGGCTTCTCTGGATGATTTATCCTTGATTTGTTCCTGATTTTCTAGATATTTTTGTTTACAATGGCTTAGGATGTAGTAGGTGTCGTTGATTTGGATACTGTTGGTCCGGAATTCTAGAAAAGCTAGGCGAAGTGTTGTAGATTTGTCGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35307</snp_id>
        <super_contig>c009801781.Contig1</super_contig>
        <contig_pos>13559</contig_pos>
        <strand></strand>
        <context>ATTTGGATAC[T/G]GTTGGTCCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTTTTGTTTACAATGGCTTAGGATGTAGTAGGTGTCGTTGATTTGGATAC</left_flank>
        <right_flank>GTTGGTCCGGAATTCTAGAAAAGCTAGGCGAAGTGTTGTAGATTTGTCGA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGTGCTGTTCGAAAAACTAGATTATGGAGATTATGGAGCTGCGCATTTTCCAGTTTCAAAGTCTCCAATGGCAAACATGAGGGATCTAGAATTGGAAGAATCTCTTCGAAATCCGTCCTCTCGGAGTTAAGAGTTTTAACCCAGATTTTCAGATTCTCAGGGAGTCTTAAAATATCTCCCTTCTTCAAATCCAACACCAACTCATCTGCCACTTTAATAGGGGTTTTTCGTCCACCCAGTAAGAAGTTGAACAACTTTTTCAAAGCCATATGGATTTCTAGGTTCTGCGGAAGCTTTCGAACAGTTTCATCTCCAAATTCATTTACAATTCGAAGTTTAACAAATTTCCGAAATTTCGGAAAAGAATTCCCTCCAATTTGAATTTCTCCTGGTTCCAAGGCTTCTCTGGATGATTTATCCTTGATTTGTTCCTGATTTTCTAGATATTTTTGTTTACAATGGCTTAGGATGTAGTAGGTGTCGTTGATTTGGATACTGTTGGTCCGGAATTCTAGAAAAGCTAGGCGAAGTGTTGTAGATTTGTCGATGGCATGGAGAGAGGGGCATCGGGAGGTTAGATCGATTCTGAAAATCACATTTTTGAGCTTCAAATCAAGTTTAAGTACGCGAGAATAGCTGGAAACTTGAAATTTTCGATATTCGGGAAATCAAGTGTTATGCCAAAACTCAAAACTGAATGATTTTTCAAGATCGACGTTAATATTTTTAGATTTATCATGTTTTCGGCTTTAAAATAAGCCTAATCATGCCTAGAATCGGTCAACTTTCAAATTTGTTGCCTAACACGCGACGCACGACCGCGTCGCACCCCAAAAAAGAAGGAGAGCAAATCTAGCCGTGTTTAGGCTCATTCTGAAGCTCTAAACGTAAGGAGCTCAAATATTCACATTTCATGAAATATGGTTGAGCTTGCTAAGAAATATTTGAGATTTCCAAAACTCGGGAAATCTAGTTTCATGCCTAAACTTAGAACAAA</canonical>
            <polymorphic>TTCTGTGCTGTTCGAAAAACTAGATTATGGAGATTATGGAGCTGCGCATTTTCCAGTTTCAAAGTCTCCAATGGCAAACATGAGGGATCTAGAATTGGAAGAATCTCTTCGAAATCCGTCCTCTCGGAGTTAAGAGTTTTAACCCAGATTTTCAGATTCTCAGGGAGTCTTAAAATATCTCCCTTCTTCAAATCCAACACCAACTCATCTGCCACTTTAATAGGGGTTTTTCGTCCACCCAGTAAGAAGTTGAACAACTTTTTCAAAGCCATATGGATTTCTAGGTTCTGCGGAAGCTTTCGAACAGTTTCATCTCCAAATTCATTTACAATTCGAAGTTTAACAAATTTCCGAAATTTCGGAAAAGAATTCCCTCCAATTTGAATTTCTCCTGGTTCCAAGGCTTCTCTGGATGATTTATCCTTGATTTGTTCCTGATTTTCTAGATATTTTTGTTTACAATGGCTTAGGATGTAGTAGGTGTCGTTGATTTGGATACKGTTGGTCCGGAATTCTAGAAAAGCTAGGCGAAGTGTTGTAGATTTGTCGATGGCATGGAGAGAGGGGCATCGGGAGGTTAGATCGATTCTGAAAATCACATTTTTGAGCTTCAAATCAAGTTTAAGTACGCGAGAATAGCTGGAAACTTGAAATTTTCGATATTCGGGAAATCAAGTGTTATGCCAAAACTCAAAACTGAATGATTTTTCAAGATCGACGTTAATATTTTTAGATTTATCATGTTTTCGGCTTTAAAATAAGCCTAATCATGCCTAGAATCGGTCAACTTTCAAATTTGTTGCCTAACACGCGACGCACGACCGCGTCGCACCCCAAAAAAGAAGGAGAGCAAATCTAGCCGTGTTTAGGCTCATTCTGAAGCTCTAAACGTAAGGAGCTCAAATATTCACATTTCATGAAATATGGTTGAGCTTGCTAAGAAATATTTGAGATTTCCAAAACTCGGGAAATCTAGTTTCATGCCTAAACTTAGAACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGTTTCATCTCCAAATTCAT</pcr_primer_p1>
		<pcr_primer_p2>CCATCGACAAATCTACAACAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACAGTTTCATCTCCAAATTCATTTACAATTCGAAGTTTAACAAATTTCCGAAATTTCGGAAAAGAATTCCCTCCAATTTGAATTTCTCCTGGTTCCAAGGCTTCTCTGGATGATTTATCCTTGATTTGTTCCTGATTTTCTAGATATTTTTGTTTACAATGGCTTAGGATGTAGTAGGTGTCGTTGATTTGGATACTGTTGGTCCGGAATTCTAGAAAAGCTAGGCGAAGTGTTGTAGATTTGTCGATGG</canonical_amplicon>
		<polymorphic_amplicon>ACAGTTTCATCTCCAAATTCATTTACAATTCGAAGTTTAACAAATTTCCGAAATTTCGGAAAAGAATTCCCTCCAATTTGAATTTCTCCTGGTTCCAAGGCTTCTCTGGATGATTTATCCTTGATTTGTTCCTGATTTTCTAGATATTTTTGTTTACAATGGCTTAGGATGTAGTAGGTGTCGTTGATTTGGATACKGTTGGTCCGGAATTCTAGAAAAGCTAGGCGAAGTGTTGTAGATTTGTCGATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35308</snp_id>
        <super_contig>c009801781.Contig1</super_contig>
        <contig_pos>13643</contig_pos>
        <strand></strand>
        <context>GAGGTTAGAT[C/G]GATTCTGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGTTGTAGATTTGTCGATGGCATGGAGAGAGGGGCATCGGGAGGTTAGAT</left_flank>
        <right_flank>GATTCTGAAAATCACATTTTTGAGCTTCAAATCAAGTTTAAGTACGCGAG</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATCTAGAATTGGAAGAATCTCTTCGAAATCCGTCCTCTCGGAGTTAAGAGTTTTAACCCAGATTTTCAGATTCTCAGGGAGTCTTAAAATATCTCCCTTCTTCAAATCCAACACCAACTCATCTGCCACTTTAATAGGGGTTTTTCGTCCACCCAGTAAGAAGTTGAACAACTTTTTCAAAGCCATATGGATTTCTAGGTTCTGCGGAAGCTTTCGAACAGTTTCATCTCCAAATTCATTTACAATTCGAAGTTTAACAAATTTCCGAAATTTCGGAAAAGAATTCCCTCCAATTTGAATTTCTCCTGGTTCCAAGGCTTCTCTGGATGATTTATCCTTGATTTGTTCCTGATTTTCTAGATATTTTTGTTTACAATGGCTTAGGATGTAGTAGGTGTCGTTGATTTGGATACTGTTGGTCCGGAATTCTAGAAAAGCTAGGCGAAGTGTTGTAGATTTGTCGATGGCATGGAGAGAGGGGCATCGGGAGGTTAGATCGATTCTGAAAATCACATTTTTGAGCTTCAAATCAAGTTTAAGTACGCGAGAATAGCTGGAAACTTGAAATTTTCGATATTCGGGAAATCAAGTGTTATGCCAAAACTCAAAACTGAATGATTTTTCAAGATCGACGTTAATATTTTTAGATTTATCATGTTTTCGGCTTTAAAATAAGCCTAATCATGCCTAGAATCGGTCAACTTTCAAATTTGTTGCCTAACACGCGACGCACGACCGCGTCGCACCCCAAAAAAGAAGGAGAGCAAATCTAGCCGTGTTTAGGCTCATTCTGAAGCTCTAAACGTAAGGAGCTCAAATATTCACATTTCATGAAATATGGTTGAGCTTGCTAAGAAATATTTGAGATTTCCAAAACTCGGGAAATCTAGTTTCATGCCTAAACTTAGAACAAAATAATCTAAACTAGACAATTTTAGACTCATTTCAAAGCCATCGTTCTCTAAAACTCAAAAGTTTCTTTTTCAACACCTCAAACT</canonical>
            <polymorphic>GGATCTAGAATTGGAAGAATCTCTTCGAAATCCGTCCTCTCGGAGTTAAGAGTTTTAACCCAGATTTTCAGATTCTCAGGGAGTCTTAAAATATCTCCCTTCTTCAAATCCAACACCAACTCATCTGCCACTTTAATAGGGGTTTTTCGTCCACCCAGTAAGAAGTTGAACAACTTTTTCAAAGCCATATGGATTTCTAGGTTCTGCGGAAGCTTTCGAACAGTTTCATCTCCAAATTCATTTACAATTCGAAGTTTAACAAATTTCCGAAATTTCGGAAAAGAATTCCCTCCAATTTGAATTTCTCCTGGTTCCAAGGCTTCTCTGGATGATTTATCCTTGATTTGTTCCTGATTTTCTAGATATTTTTGTTTACAATGGCTTAGGATGTAGTAGGTGTCGTTGATTTGGATACTGTTGGTCCGGAATTCTAGAAAAGCTAGGCGAAGTGTTGTAGATTTGTCGATGGCATGGAGAGAGGGGCATCGGGAGGTTAGATSGATTCTGAAAATCACATTTTTGAGCTTCAAATCAAGTTTAAGTACGCGAGAATAGCTGGAAACTTGAAATTTTCGATATTCGGGAAATCAAGTGTTATGCCAAAACTCAAAACTGAATGATTTTTCAAGATCGACGTTAATATTTTTAGATTTATCATGTTTTCGGCTTTAAAATAAGCCTAATCATGCCTAGAATCGGTCAACTTTCAAATTTGTTGCCTAACACGCGACGCACGACCGCGTCGCACCCCAAAAAAGAAGGAGAGCAAATCTAGCCGTGTTTAGGCTCATTCTGAAGCTCTAAACGTAAGGAGCTCAAATATTCACATTTCATGAAATATGGTTGAGCTTGCTAAGAAATATTTGAGATTTCCAAAACTCGGGAAATCTAGTTTCATGCCTAAACTTAGAACAAAATAATCTAAACTAGACAATTTTAGACTCATTTCAAAGCCATCGTTCTCTAAAACTCAAAAGTTTCTTTTTCAACACCTCAAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>495 372 132 1</canonical_bands>
                <polymorphic_bands>627 372 1</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>368 214 191 74 58 36 33 26</canonical_bands>
                <polymorphic_bands>368 214 191 110 58 33 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGCTTCTCTGGATGATTTAT</pcr_primer_p1>
		<pcr_primer_p2>ATTCTCGCGTACTTAAACTTGA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AAGGCTTCTCTGGATGATTTATCCTTGATTTGTTCCTGATTTTCTAGATATTTTTGTTTACAATGGCTTAGGATGTAGTAGGTGTCGTTGATTTGGATACTGTTGGTCCGGAATTCTAGAAAAGCTAGGCGAAGTGTTGTAGATTTGTCGATGGCATGGAGAGAGGGGCATCGGGAGGTTAGATCGATTCTGAAAATCACATTTTTGAGCTTCAAATCAAGTTTAAGTACGCGAGAAT</canonical_amplicon>
		<polymorphic_amplicon>AAGGCTTCTCTGGATGATTTATCCTTGATTTGTTCCTGATTTTCTAGATATTTTTGTTTACAATGGCTTAGGATGTAGTAGGTGTCGTTGATTTGGATACTGTTGGTCCGGAATTCTAGAAAAGCTAGGCGAAGTGTTGTAGATTTGTCGATGGCATGGAGAGAGGGGCATCGGGAGGTTAGATSGATTCTGAAAATCACATTTTTGAGCTTCAAATCAAGTTTAAGTACGCGAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35309</snp_id>
        <super_contig>c009801781.Contig1</super_contig>
        <contig_pos>13697</contig_pos>
        <strand></strand>
        <context>ACGCGAGAAT[A/G]GCTGgaaact</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGAAAATCACATTTTTGAGCTTCAAATCAAGTTTAAGTACGCGAGAAT</left_flank>
        <right_flank>GCTGGAAACTTGAAATTTTCGATATTCGGGAAATCAAGTGTTATGCCAAA</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAACCCAGATTTTCAGATTCTCAGGGAGTCTTAAAATATCTCCCTTCTTCAAATCCAACACCAACTCATCTGCCACTTTAATAGGGGTTTTTCGTCCACCCAGTAAGAAGTTGAACAACTTTTTCAAAGCCATATGGATTTCTAGGTTCTGCGGAAGCTTTCGAACAGTTTCATCTCCAAATTCATTTACAATTCGAAGTTTAACAAATTTCCGAAATTTCGGAAAAGAATTCCCTCCAATTTGAATTTCTCCTGGTTCCAAGGCTTCTCTGGATGATTTATCCTTGATTTGTTCCTGATTTTCTAGATATTTTTGTTTACAATGGCTTAGGATGTAGTAGGTGTCGTTGATTTGGATACTGTTGGTCCGGAATTCTAGAAAAGCTAGGCGAAGTGTTGTAGATTTGTCGATGGCATGGAGAGAGGGGCATCGGGAGGTTAGATCGATTCTGAAAATCACATTTTTGAGCTTCAAATCAAGTTTAAGTACGCGAGAATAGCTGGAAACTTGAAATTTTCGATATTCGGGAAATCAAGTGTTATGCCAAAACTCAAAACTGAATGATTTTTCAAGATCGACGTTAATATTTTTAGATTTATCATGTTTTCGGCTTTAAAATAAGCCTAATCATGCCTAGAATCGGTCAACTTTCAAATTTGTTGCCTAACACGCGACGCACGACCGCGTCGCACCCCAAAAAAGAAGGAGAGCAAATCTAGCCGTGTTTAGGCTCATTCTGAAGCTCTAAACGTAAGGAGCTCAAATATTCACATTTCATGAAATATGGTTGAGCTTGCTAAGAAATATTTGAGATTTCCAAAACTCGGGAAATCTAGTTTCATGCCTAAACTTAGAACAAAATAATCTAAACTAGACAATTTTAGACTCATTTCAAAGCCATCGTTCTCTAAAACTCAAAAGTTTCTTTTTCAACACCTCAAACTCAAAACCTCACCTCTTATTCGCTTCCATAAACTCTAAAATCGGTCCCATTGCTG</canonical>
            <polymorphic>TTAACCCAGATTTTCAGATTCTCAGGGAGTCTTAAAATATCTCCCTTCTTCAAATCCAACACCAACTCATCTGCCACTTTAATAGGGGTTTTTCGTCCACCCAGTAAGAAGTTGAACAACTTTTTCAAAGCCATATGGATTTCTAGGTTCTGCGGAAGCTTTCGAACAGTTTCATCTCCAAATTCATTTACAATTCGAAGTTTAACAAATTTCCGAAATTTCGGAAAAGAATTCCCTCCAATTTGAATTTCTCCTGGTTCCAAGGCTTCTCTGGATGATTTATCCTTGATTTGTTCCTGATTTTCTAGATATTTTTGTTTACAATGGCTTAGGATGTAGTAGGTGTCGTTGATTTGGATACTGTTGGTCCGGAATTCTAGAAAAGCTAGGCGAAGTGTTGTAGATTTGTCGATGGCATGGAGAGAGGGGCATCGGGAGGTTAGATCGATTCTGAAAATCACATTTTTGAGCTTCAAATCAAGTTTAAGTACGCGAGAATRGCTGGAAACTTGAAATTTTCGATATTCGGGAAATCAAGTGTTATGCCAAAACTCAAAACTGAATGATTTTTCAAGATCGACGTTAATATTTTTAGATTTATCATGTTTTCGGCTTTAAAATAAGCCTAATCATGCCTAGAATCGGTCAACTTTCAAATTTGTTGCCTAACACGCGACGCACGACCGCGTCGCACCCCAAAAAAGAAGGAGAGCAAATCTAGCCGTGTTTAGGCTCATTCTGAAGCTCTAAACGTAAGGAGCTCAAATATTCACATTTCATGAAATATGGTTGAGCTTGCTAAGAAATATTTGAGATTTCCAAAACTCGGGAAATCTAGTTTCATGCCTAAACTTAGAACAAAATAATCTAAACTAGACAATTTTAGACTCATTTCAAAGCCATCGTTCTCTAAAACTCAAAAGTTTCTTTTTCAACACCTCAAACTCAAAACCTCACCTCTTATTCGCTTCCATAAACTCTAAAATCGGTCCCATTGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>243 227 206 158 85 34 31 16</canonical_bands>
                <polymorphic_bands>274 227 206 158 85 34 16</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>130 111 107 105 101 97 85 62 58 34 31 28 16 12 12 11</canonical_bands>
                <polymorphic_bands>142 130 107 105 101 97 85 62 58 34 28 16 12 12 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGAAGTGTTGTAGATTTGTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTTCTAAGTTTAGGCATGA</pcr_primer_p2>
		<pcr_amplicon_size>474</pcr_amplicon_size>
		<canonical_amplicon>GCGAAGTGTTGTAGATTTGTCGATGGCATGGAGAGAGGGGCATCGGGAGGTTAGATCGATTCTGAAAATCACATTTTTGAGCTTCAAATCAAGTTTAAGTACGCGAGAATAGCTGGAAACTTGAAATTTTCGATATTCGGGAAATCAAGTGTTATGCCAAAACTCAAAACTGAATGATTTTTCAAGATCGACGTTAATATTTTTAGATTTATCATGTTTTCGGCTTTAAAATAAGCCTAATCATGCCTAGAATCGGTCAACTTTCAAATTTGTTGCCTAACACGCGACGCACGACCGCGTCGCACCCCAAAAAAGAAGGAGAGCAAATCTAGCCGTGTTTAGGCTCATTCTGAAGCTCTAAACGTAAGGAGCTCAAATATTCACATTTCATGAAATATGGTTGAGCTTGCTAAGAAATATTTGAGATTTCCAAAACTCGGGAAATCTAGTTTCATGCCTAAACTTAGAACAAAA</canonical_amplicon>
		<polymorphic_amplicon>GCGAAGTGTTGTAGATTTGTCGATGGCATGGAGAGAGGGGCATCGGGAGGTTAGATCGATTCTGAAAATCACATTTTTGAGCTTCAAATCAAGTTTAAGTACGCGAGAATRGCTGGAAACTTGAAATTTTCGATATTCGGGAAATCAAGTGTTATGCCAAAACTCAAAACTGAATGATTTTTCAAGATCGACGTTAATATTTTTAGATTTATCATGTTTTCGGCTTTAAAATAAGCCTAATCATGCCTAGAATCGGTCAACTTTCAAATTTGTTGCCTAACACGCGACGCACGACCGCGTCGCACCCCAAAAAAGAAGGAGAGCAAATCTAGCCGTGTTTAGGCTCATTCTGAAGCTCTAAACGTAAGGAGCTCAAATATTCACATTTCATGAAATATGGTTGAGCTTGCTAAGAAATATTTGAGATTTCCAAAACTCGGGAAATCTAGTTTCATGCCTAAACTTAGAACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35310</snp_id>
        <super_contig>c009801795.Contig1</super_contig>
        <contig_pos>3901</contig_pos>
        <strand>+</strand>
        <context>CTGAAAATAA[A/G]GATTACGGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCACTATGTGCTGAGCAATCGGATTCTGCGTCGGAGTCACTGAAAATAA</left_flank>
        <right_flank>GATTACGGTAATTTTGGAAAGCTGAGATTCTAGAAAAGGGCATTGCTCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGAATTTTTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTCACTCACCACAGTTTCTTGTGGCACACTGCCAGGCTCCAAAATTGACGAATTGAAGTTCTCCAGTGCCTCCCGAAGACGATCCGACACTTCGAATGGGGCGGCTGGAAAAATTTCGAAACTACAGTAATCCAATATATCTACAGTACTCCCTTACCATCAAACACATCATCATTCACTTCAAACGTCGCGTCACTATGTGCTGAGCAATCGGATTCTGCGTCGGAGTCACTGAAAATAAGGATTACGGTAATTTTGGAAAGCTGAGATTCTAGAAAAGGGCATTGCTCATCCTTAGACGATTCCATTTTATCATTTCTGAACTCTGTGAAAAAGAAAAAAAAGATTTGATCTCAGTGGGGTTTGAACCCGGGTCTTGAGATTGGTAGAAAACCCGTGGAAAATCCCACTGAGCCATTTGCGCACTTTTTTCGAAAATGCTAAAAAATAGTAACTTTCGATAGTTTTTATGGTTCATAAGGCCAAATTTTGTGTTTTTCATAAGTTTTAACACTAGAAACAATTAAAAACATGTCAAAAAAGTAAATAAATTCAAAAATTCAACCAAAATTGAGCCACTTTCAGTCGAAATTAAAATTTCCAGTTTTTCTTGAAAACCAGAAGTCCTAGCAAAAAGTTGTTAACTAGAAAAATGTAGAACTTAAAATTTGACACAAAATCAACACATTTTTTACAATTGAAAATTAGCGTCCTACTCGAAAAATTCAAATTTCCGGAGTGG</canonical>
            <polymorphic>TTCTGAATTTTTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTCACTCACCACAGTTTCTTGTGGCACACTGCCAGGCTCCAAAATTGACGAATTGAAGTTCTCCAGTGCCTCCCGAAGACGATCCGACACTTCGAATGGGGCGGCTGGAAAAATTTCGAAACTACAGTAATCCAATATATCTACAGTACTCCCTTACCATCAAACACATCATCATTCACTTCAAACGTCGCGTCACTATGTGCTGAGCAATCGGATTCTGCGTCGGAGTCACTGAAAATAARGATTACGGTAATTTTGGAAAGCTGAGATTCTAGAAAAGGGCATTGCTCATCCTTAGACGATTCCATTTTATCATTTCTGAACTCTGTGAAAAAGAAAAAAAAGATTTGATCTCAGTGGGGTTTGAACCCGGGTCTTGAGATTGGTAGAAAACCCGTGGAAAATCCCACTGAGCCATTTGCGCACTTTTTTCGAAAATGCTAAAAAATAGTAACTTTCGATAGTTTTTATGGTTCATAAGGCCAAATTTTGTGTTTTTCATAAGTTTTAACACTAGAAACAATTAAAAACATGTCAAAAAAGTAAATAAATTCAAAAATTCAACCAAAATTGAGCCACTTTCAGTCGAAATTAAAATTTCCAGTTTTTCTTGAAAACCAGAAGTCCTAGCAAAAAGTTGTTAACTAGAAAAATGTAGAACTTAAAATTTGACACAAAATCAACACATTTTTTACAATTGAAAATTAGCGTCCTACTCGAAAAATTCAAATTTCCGGAGTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATTGAAGTTCTCCAGTG</pcr_primer_p1>
		<pcr_primer_p2>TGGAATCGTCTAAGGATGAG</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>CGAATTGAAGTTCTCCAGTGCCTCCCGAAGACGATCCGACACTTCGAATGGGGCGGCTGGAAAAATTTCGAAACTACAGTAATCCAATATATCTACAGTACTCCCTTACCATCAAACACATCATCATTCACTTCAAACGTCGCGTCACTATGTGCTGAGCAATCGGATTCTGCGTCGGAGTCACTGAAAATAAGGATTACGGTAATTTTGGAAAGCTGAGATTCTAGAAAAGGGCATTGCTCATCCTTAGACGATTCCA</canonical_amplicon>
		<polymorphic_amplicon>CGAATTGAAGTTCTCCAGTGCCTCCCGAAGACGATCCGACACTTCGAATGGGGCGGCTGGAAAAATTTCGAAACTACAGTAATCCAATATATCTACAGTACTCCCTTACCATCAAACACATCATCATTCACTTCAAACGTCGCGTCACTATGTGCTGAGCAATCGGATTCTGCGTCGGAGTCACTGAAAATAARGATTACGGTAATTTTGGAAAGCTGAGATTCTAGAAAAGGGCATTGCTCATCCTTAGACGATTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35311</snp_id>
        <super_contig>c009801795.Contig1</super_contig>
        <contig_pos>3916</contig_pos>
        <strand>+</strand>
        <context>ACGGTAATTT[A/T]GGAAAGCTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCAATCGGATTCTGCGTCGGAGTCACTGAAAATAAGGATTACGGTAATTT</left_flank>
        <right_flank>GGAAAGCTGAGATTCTAGAAAAGGGCATTGCTCATCCTTAGACGATTCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTCACTCACCACAGTTTCTTGTGGCACACTGCCAGGCTCCAAAATTGACGAATTGAAGTTCTCCAGTGCCTCCCGAAGACGATCCGACACTTCGAATGGGGCGGCTGGAAAAATTTCGAAACTACAGTAATCCAATATATCTACAGTACTCCCTTACCATCAAACACATCATCATTCACTTCAAACGTCGCGTCACTATGTGCTGAGCAATCGGATTCTGCGTCGGAGTCACTGAAAATAAGGATTACGGTAATTTTGGAAAGCTGAGATTCTAGAAAAGGGCATTGCTCATCCTTAGACGATTCCATTTTATCATTTCTGAACTCTGTGAAAAAGAAAAAAAAGATTTGATCTCAGTGGGGTTTGAACCCGGGTCTTGAGATTGGTAGAAAACCCGTGGAAAATCCCACTGAGCCATTTGCGCACTTTTTTCGAAAATGCTAAAAAATAGTAACTTTCGATAGTTTTTATGGTTCATAAGGCCAAATTTTGTGTTTTTCATAAGTTTTAACACTAGAAACAATTAAAAACATGTCAAAAAAGTAAATAAATTCAAAAATTCAACCAAAATTGAGCCACTTTCAGTCGAAATTAAAATTTCCAGTTTTTCTTGAAAACCAGAAGTCCTAGCAAAAAGTTGTTAACTAGAAAAATGTAGAACTTAAAATTTGACACAAAATCAACACATTTTTTACAATTGAAAATTAGCGTCCTACTCGAAAAATTCAAATTTCCGGAGTGGTCGATGCACCATGTC</canonical>
            <polymorphic>TTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTCACTCACCACAGTTTCTTGTGGCACACTGCCAGGCTCCAAAATTGACGAATTGAAGTTCTCCAGTGCCTCCCGAAGACGATCCGACACTTCGAATGGGGCGGCTGGAAAAATTTCGAAACTACAGTAATCCAATATATCTACAGTACTCCCTTACCATCAAACACATCATCATTCACTTCAAACGTCGCGTCACTATGTGCTGAGCAATCGGATTCTGCGTCGGAGTCACTGAAAATAAGGATTACGGTAATTTWGGAAAGCTGAGATTCTAGAAAAGGGCATTGCTCATCCTTAGACGATTCCATTTTATCATTTCTGAACTCTGTGAAAAAGAAAAAAAAGATTTGATCTCAGTGGGGTTTGAACCCGGGTCTTGAGATTGGTAGAAAACCCGTGGAAAATCCCACTGAGCCATTTGCGCACTTTTTTCGAAAATGCTAAAAAATAGTAACTTTCGATAGTTTTTATGGTTCATAAGGCCAAATTTTGTGTTTTTCATAAGTTTTAACACTAGAAACAATTAAAAACATGTCAAAAAAGTAAATAAATTCAAAAATTCAACCAAAATTGAGCCACTTTCAGTCGAAATTAAAATTTCCAGTTTTTCTTGAAAACCAGAAGTCCTAGCAAAAAGTTGTTAACTAGAAAAATGTAGAACTTAAAATTTGACACAAAATCAACACATTTTTTACAATTGAAAATTAGCGTCCTACTCGAAAAATTCAAATTTCCGGAGTGGTCGATGCACCATGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATCATTCACTTCAAACGTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGACATGTTTTTAATTGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>372</pcr_amplicon_size>
		<canonical_amplicon>TCATCATTCACTTCAAACGTCGCGTCACTATGTGCTGAGCAATCGGATTCTGCGTCGGAGTCACTGAAAATAAGGATTACGGTAATTTTGGAAAGCTGAGATTCTAGAAAAGGGCATTGCTCATCCTTAGACGATTCCATTTTATCATTTCTGAACTCTGTGAAAAAGAAAAAAAAGATTTGATCTCAGTGGGGTTTGAACCCGGGTCTTGAGATTGGTAGAAAACCCGTGGAAAATCCCACTGAGCCATTTGCGCACTTTTTTCGAAAATGCTAAAAAATAGTAACTTTCGATAGTTTTTATGGTTCATAAGGCCAAATTTTGTGTTTTTCATAAGTTTTAACACTAGAAACAATTAAAAACATGTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCATCATTCACTTCAAACGTCGCGTCACTATGTGCTGAGCAATCGGATTCTGCGTCGGAGTCACTGAAAATAAGGATTACGGTAATTTWGGAAAGCTGAGATTCTAGAAAAGGGCATTGCTCATCCTTAGACGATTCCATTTTATCATTTCTGAACTCTGTGAAAAAGAAAAAAAAGATTTGATCTCAGTGGGGTTTGAACCCGGGTCTTGAGATTGGTAGAAAACCCGTGGAAAATCCCACTGAGCCATTTGCGCACTTTTTTCGAAAATGCTAAAAAATAGTAACTTTCGATAGTTTTTATGGTTCATAAGGCCAAATTTTGTGTTTTTCATAAGTTTTAACACTAGAAACAATTAAAAACATGTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35312</snp_id>
        <super_contig>c009801795.Contig1</super_contig>
        <contig_pos>3967</contig_pos>
        <strand>+</strand>
        <context>GACGATTCCA[A/T]Tttatcattt</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAAAGCTGAGATTCTAGAAAAGGGCATTGCTCATCCTTAGACGATTCCA</left_flank>
        <right_flank>TTTATCATTTCTGAACTCTGTGAAAAAGAAAAAAAAGATTTGATCTCAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTCACTCACCACAGTTTCTTGTGGCACACTGCCAGGCTCCAAAATTGACGAATTGAAGTTCTCCAGTGCCTCCCGAAGACGATCCGACACTTCGAATGGGGCGGCTGGAAAAATTTCGAAACTACAGTAATCCAATATATCTACAGTACTCCCTTACCATCAAACACATCATCATTCACTTCAAACGTCGCGTCACTATGTGCTGAGCAATCGGATTCTGCGTCGGAGTCACTGAAAATAAGGATTACGGTAATTTTGGAAAGCTGAGATTCTAGAAAAGGGCATTGCTCATCCTTAGACGATTCCATTTTATCATTTCTGAACTCTGTGAAAAAGAAAAAAAAGATTTGATCTCAGTGGGGTTTGAACCCGGGTCTTGAGATTGGTAGAAAACCCGTGGAAAATCCCACTGAGCCATTTGCGCACTTTTTTCGAAAATGCTAAAAAATAGTAACTTTCGATAGTTTTTATGGTTCATAAGGCCAAATTTTGTGTTTTTCATAAGTTTTAACACTAGAAACAATTAAAAACATGTCAAAAAAGTAAATAAATTCAAAAATTCAACCAAAATTGAGCCACTTTCAGTCGAAATTAAAATTTCCAGTTTTTCTTGAAAACCAGAAGTCCTAGCAAAAAGTTGTTAACTAGAAAAATGTAGAACTTAAAATTTGACACAAAATCAACACATTTTTTACAATTGAAAATTAGCGTCCTACTCGAAAAATTCAAATTTCCGGAGTGGTCGATGCACCATGTCGCCTATACCCATTTGGTTTTTGGGGTATATCTCAAAAACTAGAGGTTCCAG</canonical>
            <polymorphic>TTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTCACTCACCACAGTTTCTTGTGGCACACTGCCAGGCTCCAAAATTGACGAATTGAAGTTCTCCAGTGCCTCCCGAAGACGATCCGACACTTCGAATGGGGCGGCTGGAAAAATTTCGAAACTACAGTAATCCAATATATCTACAGTACTCCCTTACCATCAAACACATCATCATTCACTTCAAACGTCGCGTCACTATGTGCTGAGCAATCGGATTCTGCGTCGGAGTCACTGAAAATAAGGATTACGGTAATTTTGGAAAGCTGAGATTCTAGAAAAGGGCATTGCTCATCCTTAGACGATTCCAWTTTATCATTTCTGAACTCTGTGAAAAAGAAAAAAAAGATTTGATCTCAGTGGGGTTTGAACCCGGGTCTTGAGATTGGTAGAAAACCCGTGGAAAATCCCACTGAGCCATTTGCGCACTTTTTTCGAAAATGCTAAAAAATAGTAACTTTCGATAGTTTTTATGGTTCATAAGGCCAAATTTTGTGTTTTTCATAAGTTTTAACACTAGAAACAATTAAAAACATGTCAAAAAAGTAAATAAATTCAAAAATTCAACCAAAATTGAGCCACTTTCAGTCGAAATTAAAATTTCCAGTTTTTCTTGAAAACCAGAAGTCCTAGCAAAAAGTTGTTAACTAGAAAAATGTAGAACTTAAAATTTGACACAAAATCAACACATTTTTTACAATTGAAAATTAGCGTCCTACTCGAAAAATTCAAATTTCCGGAGTGGTCGATGCACCATGTCGCCTATACCCATTTGGTTTTTGGGGTATATCTCAAAAACTAGAGGTTCCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTCGGAGTCACTGAAAATA</pcr_primer_p1>
		<pcr_primer_p2>CAATTTTGGTTGAATTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>353</pcr_amplicon_size>
		<canonical_amplicon>CGTCGGAGTCACTGAAAATAAGGATTACGGTAATTTTGGAAAGCTGAGATTCTAGAAAAGGGCATTGCTCATCCTTAGACGATTCCATTTTATCATTTCTGAACTCTGTGAAAAAGAAAAAAAAGATTTGATCTCAGTGGGGTTTGAACCCGGGTCTTGAGATTGGTAGAAAACCCGTGGAAAATCCCACTGAGCCATTTGCGCACTTTTTTCGAAAATGCTAAAAAATAGTAACTTTCGATAGTTTTTATGGTTCATAAGGCCAAATTTTGTGTTTTTCATAAGTTTTAACACTAGAAACAATTAAAAACATGTCAAAAAAGTAAATAAATTCAAAAATTCAACCAAAATTG</canonical_amplicon>
		<polymorphic_amplicon>CGTCGGAGTCACTGAAAATAAGGATTACGGTAATTTTGGAAAGCTGAGATTCTAGAAAAGGGCATTGCTCATCCTTAGACGATTCCAWTTTATCATTTCTGAACTCTGTGAAAAAGAAAAAAAAGATTTGATCTCAGTGGGGTTTGAACCCGGGTCTTGAGATTGGTAGAAAACCCGTGGAAAATCCCACTGAGCCATTTGCGCACTTTTTTCGAAAATGCTAAAAAATAGTAACTTTCGATAGTTTTTATGGTTCATAAGGCCAAATTTTGTGTTTTTCATAAGTTTTAACACTAGAAACAATTAAAAACATGTCAAAAAAGTAAATAAATTCAAAAATTCAACCAAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35313</snp_id>
        <super_contig>c009801795.Contig1</super_contig>
        <contig_pos>4160</contig_pos>
        <strand>+</strand>
        <context>tgtgtttttc[A/T]taagttttaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTAACTTTCGATAGTTTTTATGGTTCATAAGGCCAAATTTTGTGTTTTTC</left_flank>
        <right_flank>TAAGTTTTAACACTAGAAACAATTAAAAACATGTCAAAAAAGTAAATAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACTCACCACAGTTTCTTGTGGCACACTGCCAGGCTCCAAAATTGACGAATTGAAGTTCTCCAGTGCCTCCCGAAGACGATCCGACACTTCGAATGGGGCGGCTGGAAAAATTTCGAAACTACAGTAATCCAATATATCTACAGTACTCCCTTACCATCAAACACATCATCATTCACTTCAAACGTCGCGTCACTATGTGCTGAGCAATCGGATTCTGCGTCGGAGTCACTGAAAATAAGGATTACGGTAATTTTGGAAAGCTGAGATTCTAGAAAAGGGCATTGCTCATCCTTAGACGATTCCATTTTATCATTTCTGAACTCTGTGAAAAAGAAAAAAAAGATTTGATCTCAGTGGGGTTTGAACCCGGGTCTTGAGATTGGTAGAAAACCCGTGGAAAATCCCACTGAGCCATTTGCGCACTTTTTTCGAAAATGCTAAAAAATAGTAACTTTCGATAGTTTTTATGGTTCATAAGGCCAAATTTTGTGTTTTTCATAAGTTTTAACACTAGAAACAATTAAAAACATGTCAAAAAAGTAAATAAATTCAAAAATTCAACCAAAATTGAGCCACTTTCAGTCGAAATTAAAATTTCCAGTTTTTCTTGAAAACCAGAAGTCCTAGCAAAAAGTTGTTAACTAGAAAAATGTAGAACTTAAAATTTGACACAAAATCAACACATTTTTTACAATTGAAAATTAGCGTCCTACTCGAAAAATTCAAATTTCCGGAGTGGTCGATGCACCATGTCGCCTATACCCATTTGGTTTTTGGGGTATATCTCAAAAACTAGAGGTTCCAGCAAAAAGTGCCTAATTAAAAAAATGTAGAGCATAAAATTGTACACAAGGAAAAAATTTGAAAATTTTAGAAAATTTGCTCCAAAACATTTTGATGAGCTCTGAAAGTTGAAAACTTTTTTTGACGCTATAAATCCCTGAAAACCTCAAATTTCACCTTTCAAGCTTCATATCCACATTTGTGAGCTCAGCAAA</canonical>
            <polymorphic>TCACTCACCACAGTTTCTTGTGGCACACTGCCAGGCTCCAAAATTGACGAATTGAAGTTCTCCAGTGCCTCCCGAAGACGATCCGACACTTCGAATGGGGCGGCTGGAAAAATTTCGAAACTACAGTAATCCAATATATCTACAGTACTCCCTTACCATCAAACACATCATCATTCACTTCAAACGTCGCGTCACTATGTGCTGAGCAATCGGATTCTGCGTCGGAGTCACTGAAAATAAGGATTACGGTAATTTTGGAAAGCTGAGATTCTAGAAAAGGGCATTGCTCATCCTTAGACGATTCCATTTTATCATTTCTGAACTCTGTGAAAAAGAAAAAAAAGATTTGATCTCAGTGGGGTTTGAACCCGGGTCTTGAGATTGGTAGAAAACCCGTGGAAAATCCCACTGAGCCATTTGCGCACTTTTTTCGAAAATGCTAAAAAATAGTAACTTTCGATAGTTTTTATGGTTCATAAGGCCAAATTTTGTGTTTTTCWTAAGTTTTAACACTAGAAACAATTAAAAACATGTCAAAAAAGTAAATAAATTCAAAAATTCAACCAAAATTGAGCCACTTTCAGTCGAAATTAAAATTTCCAGTTTTTCTTGAAAACCAGAAGTCCTAGCAAAAAGTTGTTAACTAGAAAAATGTAGAACTTAAAATTTGACACAAAATCAACACATTTTTTACAATTGAAAATTAGCGTCCTACTCGAAAAATTCAAATTTCCGGAGTGGTCGATGCACCATGTCGCCTATACCCATTTGGTTTTTGGGGTATATCTCAAAAACTAGAGGTTCCAGCAAAAAGTGCCTAATTAAAAAAATGTAGAGCATAAAATTGTACACAAGGAAAAAATTTGAAAATTTTAGAAAATTTGCTCCAAAACATTTTGATGAGCTCTGAAAGTTGAAAACTTTTTTTGACGCTATAAATCCCTGAAAACCTCAAATTTCACCTTTCAAGCTTCATATCCACATTTGTGAGCTCAGCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTCATCCTTAGACGATTC</pcr_primer_p1>
		<pcr_primer_p2>GGTTGAATTTTTGAATTTATTTACT</pcr_primer_p2>
		<pcr_amplicon_size>281</pcr_amplicon_size>
		<canonical_amplicon>TGCTCATCCTTAGACGATTCCATTTTATCATTTCTGAACTCTGTGAAAAAGAAAAAAAAGATTTGATCTCAGTGGGGTTTGAACCCGGGTCTTGAGATTGGTAGAAAACCCGTGGAAAATCCCACTGAGCCATTTGCGCACTTTTTTCGAAAATGCTAAAAAATAGTAACTTTCGATAGTTTTTATGGTTCATAAGGCCAAATTTTGTGTTTTTCATAAGTTTTAACACTAGAAACAATTAAAAACATGTCAAAAAAGTAAATAAATTCAAAAATTCAACC</canonical_amplicon>
		<polymorphic_amplicon>TGCTCATCCTTAGACGATTCCATTTTATCATTTCTGAACTCTGTGAAAAAGAAAAAAAAGATTTGATCTCAGTGGGGTTTGAACCCGGGTCTTGAGATTGGTAGAAAACCCGTGGAAAATCCCACTGAGCCATTTGCGCACTTTTTTCGAAAATGCTAAAAAATAGTAACTTTCGATAGTTTTTATGGTTCATAAGGCCAAATTTTGTGTTTTTCWTAAGTTTTAACACTAGAAACAATTAAAAACATGTCAAAAAAGTAAATAAATTCAAAAATTCAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35314</snp_id>
        <super_contig>c009801795.Contig1</super_contig>
        <contig_pos>22906</contig_pos>
        <strand>+</strand>
        <context>ATCAGAAAAA[C/G]GAGAGAGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTGTGTGACGGGTGGAGGGGTCAAACTTTACACTAAATCAATCAGAAAAA</left_flank>
        <right_flank>GAGAGAGAGAGAGAGACGGGTGACGTGTGCACAACATATACACTTGTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAGCTCTGGATTGTCGTTTTTGAGCATTGCAACAAAATCAAAAAATAATTAGCCTCAGTGGGGTTTGAACCCGGGTCGTGAGATTGATAGAAAATTCATGAAAAAACCCACTGAGCCATTTGAGCACTTTTTCCAAAATTGTTCTAAAAATTGTTTTTTACGGTTTTCAGGGTCAAATTTTGTGTTTTTTGACAATTTTCAAAATTCCCAGGGCACAATTCTGCCTGTTAAGAAAGTTTTTGACACTTAAAAAACGTAAAAAACCGCTCTATGTTATCAAAAATTTCCTTAAAAATAGTACTAAACAAAGCCGCTTCAAAATACAAGAAACAGCTTGAGAAAAGAGGATTTCGATGTAATTTTTTTTGCAAAATTTGCCGAACTAAATCACAGAAAAAAACCGAGAACCGCCAGACACCTTCTCTCCTAACTATAAGATGTGTTCACCTGTGTGACGGGTGGAGGGGTCAAACTTTACACTAAATCAATCAGAAAAAAGAGAGAGAGAGAGAGACGGGTGACGTGTGCACAACATATACACTTGTTGACCAATAATACATTCTTCCTACCTTTATGTACCTATTCCAACTGTTAGATGGGGAGAGAAGAGGCGTTTTTCTTTCGTTTTTACACTGAAATCTTCGTTTTTGCCTGGTAGCGTGCTCAAAAAACTAACAATTTTTGGCTAAAAATAGCCAAAAATAGCTTCGAAATAGTTGAAAAATGGCCCAAGTGTGACTCAAAAATAGCTCAAAAGTCCCAAAAAATTAGGTAAAATCCATGGAAAAAAATGATCAAAAAACAGCTCAAAAATGGCACAAAATGACCTTTCTAGCTTCCAAATTTGTGCCAATTTATCTCAATTTCCATAAAAGATATCAAAAAGTGGGGAACTGATAAAATGTTTATCATGTTAACAACTACATTTTAACAGTTGACCACTTTCTGATATCTTTTACAGAAACCGAGATAAATTGGCTCAAAATTAGAAGCCATTT</canonical>
            <polymorphic>TCAAGCTCTGGATTGTCGTTTTTGAGCATTGCAACAAAATCAAAAAATAATTAGCCTCAGTGGGGTTTGAACCCGGGTCGTGAGATTGATAGAAAATTCATGAAAAAACCCACTGAGCCATTTGAGCACTTTTTCCAAAATTGTTCTAAAAATTGTTTTTTACGGTTTTCAGGGTCAAATTTTGTGTTTTTTGACAATTTTCAAAATTCCCAGGGCACAATTCTGCCTGTTAAGAAAGTTTTTGACACTTAAAAAACGTAAAAAACCGCTCTATGTTATCAAAAATTTCCTTAAAAATAGTACTAAACAAAGCCGCTTCAAAATACAAGAAACAGCTTGAGAAAAGAGGATTTCGATGTAATTTTTTTTGCAAAATTTGCCGAACTAAATCACAGAAAAAAACCGAGAACCGCCAGACACCTTCTCTCCTAACTATAAGATGTGTTCACCTGTGTGACGGGTGGAGGGGTCAAACTTTACACTAAATCAATCAGAAAAASGAGAGAGAGAGAGAGACGGGTGACGTGTGCACAACATATACACTTGTTGACCAATAATACATTCTTCCTACCTTTATGTACCTATTCCAACTGTTAGATGGGGAGAGAAGAGGCGTTTTTCTTTCGTTTTTACACTGAAATCTTCGTTTTTGCCTGGTAGCGTGCTCAAAAAACTAACAATTTTTGGCTAAAAATAGCCAAAAATAGCTTCGAAATAGTTGAAAAATGGCCCAAGTGTGACTCAAAAATAGCTCAAAAGTCCCAAAAAATTAGGTAAAATCCATGGAAAAAAATGATCAAAAAACAGCTCAAAAATGGCACAAAATGACCTTTCTAGCTTCCAAATTTGTGCCAATTTATCTCAATTTCCATAAAAGATATCAAAAAGTGGGGAACTGATAAAATGTTTATCATGTTAACAACTACATTTTAACAGTTGACCACTTTCTGATATCTTTTACAGAAACCGAGATAAATTGGCTCAAAATTAGAAGCCATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATACAAGAAACAGCTTGAGA</pcr_primer_p1>
		<pcr_primer_p2>GGAAGAATGTATTATTGGTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAATACAAGAAACAGCTTGAGAAAAGAGGATTTCGATGTAATTTTTTTTGCAAAATTTGCCGAACTAAATCACAGAAAAAAACCGAGAACCGCCAGACACCTTCTCTCCTAACTATAAGATGTGTTCACCTGTGTGACGGGTGGAGGGGTCAAACTTTACACTAAATCAATCAGAAAAAAGAGAGAGAGAGAGAGACGGGTGACGTGTGCACAACATATACACTTGTTGACCAATAATACATTCTTCC</canonical_amplicon>
		<polymorphic_amplicon>AAAATACAAGAAACAGCTTGAGAAAAGAGGATTTCGATGTAATTTTTTTTGCAAAATTTGCCGAACTAAATCACAGAAAAAAACCGAGAACCGCCAGACACCTTCTCTCCTAACTATAAGATGTGTTCACCTGTGTGACGGGTGGAGGGGTCAAACTTTACACTAAATCAATCAGAAAAASGAGAGAGAGAGAGAGACGGGTGACGTGTGCACAACATATACACTTGTTGACCAATAATACATTCTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35315</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>49222</contig_pos>
        <strand>+</strand>
        <context>GTTCAGTATA[A/G]GAGAAGAGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATA</left_flank>
        <right_flank>GAGAAGAGCACTATTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTACATCTCCCGGGAATCTCATTTTTTCTATCCGGAATTCTCTTCTTGAACTTCCTTTCTCTTCGTGAAGTCTTTTGTCATCTCCACCACCTGTGTTCTTTTGCCTTCTGTCTTTTGTCTCCTGTTTTCTGAATCATATATTTTCTTACTCGACGTCAATCTGTTCACCGACAAATTGCATATTTTCCCAGGCTCTCTGATCACAAGAAAGTTCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTACTTTGCTGCATATATCCCAGAAAATGCAGAATGCCCAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTAGAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACTATTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAAACTAAAAATACATGTTCCAAAAAATATGTGATAGAGACCAATTTTGAGATCAAGGAAGTAGAAAAAAAAACAAGATTTGCAAAACCAGCTGATTCATTGTCTTTAATAAATCTTGTCTCATTCTTAATTCTCCAGACTAATCCTTTTCACTTTGATTTTCACTTTGACTTACCCTTATTAATTTGATCTCTCTATGTCTCTTTTTTGAGCCTTTTGCAAATATCTGCGTCTCTACCTTCGGGACACATTGTCTACAACTCTCTCGTTCCTCTATAACTTCACTGGGTCTCTTGCCCTTCCCACTATCTAATTTCTCGAGACAAACTCTCGTATTGGCATCC</canonical>
            <polymorphic>ATGTACATCTCCCGGGAATCTCATTTTTTCTATCCGGAATTCTCTTCTTGAACTTCCTTTCTCTTCGTGAAGTCTTTTGTCATCTCCACCACCTGTGTTCTTTTGCCTTCTGTCTTTTGTCTCCTGTTTTCTGAATCATATATTTTCTTACTCGACGTCAATCTGTTCACCGACAAATTGCATATTTTCCCAGGCTCTCTGATCACAAGAAAGTTCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTACTTTGCTGCATATATCCCAGAAAATGCAGAATGCCCAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTAGAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATARGAGAAGAGCACTATTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAAACTAAAAATACATGTTCCAAAAAATATGTGATAGAGACCAATTTTGAGATCAAGGAAGTAGAAAAAAAAACAAGATTTGCAAAACCAGCTGATTCATTGTCTTTAATAAATCTTGTCTCATTCTTAATTCTCCAGACTAATCCTTTTCACTTTGATTTTCACTTTGACTTACCCTTATTAATTTGATCTCTCTATGTCTCTTTTTTGAGCCTTTTGCAAATATCTGCGTCTCTACCTTCGGGACACATTGTCTACAACTCTCTCGTTCCTCTATAACTTCACTGGGTCTCTTGCCCTTCCCACTATCTAATTTCTCGAGACAAACTCTCGTATTGGCATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATCTTTTTCAGTCTACTTGATG</pcr_primer_p1>
		<pcr_primer_p2>TTCCAAAAATTTTAGTGTTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACTATTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAA</canonical_amplicon>
		<polymorphic_amplicon>TGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATARGAGAAGAGCACTATTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35316</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>49312</contig_pos>
        <strand>+</strand>
        <context>TGTTCTCTTG[C/T]TTTTTTTTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTG</left_flank>
        <right_flank>TTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTGTGTTCTTTTGCCTTCTGTCTTTTGTCTCCTGTTTTCTGAATCATATATTTTCTTACTCGACGTCAATCTGTTCACCGACAAATTGCATATTTTCCCAGGCTCTCTGATCACAAGAAAGTTCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTACTTTGCTGCATATATCCCAGAAAATGCAGAATGCCCAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTAGAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACTATTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAAACTAAAAATACATGTTCCAAAAAATATGTGATAGAGACCAATTTTGAGATCAAGGAAGTAGAAAAAAAAACAAGATTTGCAAAACCAGCTGATTCATTGTCTTTAATAAATCTTGTCTCATTCTTAATTCTCCAGACTAATCCTTTTCACTTTGATTTTCACTTTGACTTACCCTTATTAATTTGATCTCTCTATGTCTCTTTTTTGAGCCTTTTGCAAATATCTGCGTCTCTACCTTCGGGACACATTGTCTACAACTCTCTCGTTCCTCTATAACTTCACTGGGTCTCTTGCCCTTCCCACTATCTAATTTCTCGAGACAAACTCTCGTATTGGCATCCCCGTGGTTACTCTCTCTTCCTTCACATTTCGGTCTCTGTCTCTTTCCATCTCTCGTCATCGTCCCCCACCTTTCCAACCTTTCATTTCTT</canonical>
            <polymorphic>ACCTGTGTTCTTTTGCCTTCTGTCTTTTGTCTCCTGTTTTCTGAATCATATATTTTCTTACTCGACGTCAATCTGTTCACCGACAAATTGCATATTTTCCCAGGCTCTCTGATCACAAGAAAGTTCATTGAAACTACACATTTCCTCATTTTTTTTTTGAGACATTTGTGACTTATTTCTCTCCACCTACTCCTATTTCTACTTTGCTGCATATATCCCAGAAAATGCAGAATGCCCAATCTCTCTTTTGGTACACACTTTGTACTGGATTGCAAAGTTAGAAAAAAAAATGGATTAGCCATAAAGAAATTAGATTTCTGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACTATTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGYTTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAAACTAAAAATACATGTTCCAAAAAATATGTGATAGAGACCAATTTTGAGATCAAGGAAGTAGAAAAAAAAACAAGATTTGCAAAACCAGCTGATTCATTGTCTTTAATAAATCTTGTCTCATTCTTAATTCTCCAGACTAATCCTTTTCACTTTGATTTTCACTTTGACTTACCCTTATTAATTTGATCTCTCTATGTCTCTTTTTTGAGCCTTTTGCAAATATCTGCGTCTCTACCTTCGGGACACATTGTCTACAACTCTCTCGTTCCTCTATAACTTCACTGGGTCTCTTGCCCTTCCCACTATCTAATTTCTCGAGACAAACTCTCGTATTGGCATCCCCGTGGTTACTCTCTCTTCCTTCACATTTCGGTCTCTGTCTCTTTCCATCTCTCGTCATCGTCCCCCACCTTTCCAACCTTTCATTTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATCTTTTTCAGTCTACTTGATG</pcr_primer_p1>
		<pcr_primer_p2>TTCCAAAAATTTTAGTGTTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACTATTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGTTTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAA</canonical_amplicon>
		<polymorphic_amplicon>TGATCTTTTTCAGTCTACTTGATGACTATTTTCTTAAAACGGATTAGTCTTGTAGAACTTCTCTCGCTTCGAAAAATGCACGTTCAGTATAGGAGAAGAGCACTATTGGTGTGACTTCTTGTGTCTAATATTTGAGACAGCTGCAAATAGATATTATAACTCGTTGATTTTTGTTCTCTTGYTTTTTTTTGCATATTCTGTTTATAAATATAGCCAGAAATGTATACTAGAAAACACTAAAATTTTTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35317</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>52750</contig_pos>
        <strand>+</strand>
        <context>ATTTAGTTTT[C/T]TGTTGTTTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACAGAGTCAGATATTTGAAATTTTTAAAAATACTCTTTCATTTAGTTTT</left_flank>
        <right_flank>TGTTGTTTAACCTGTCGATATTCATCCATCATAGTGCCTTTTCTTCAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGATAGAACTCCAGAGCCAACAAGACCATTAGGATTTAACAAGAAGAAGTATCAAATGCTGGATCAACTTTTGAAACCAATGAGAACAATGGAAATTGATATGACTGAGTTTGCTGCATTCAAAGCAATTTTCTTCCTCAATCCAGATGCAGATGACGTTGATGCAAATGCCAAGAAAATGTTGAGTGATGGCAGAAGCGCCATTACTAATGCTCTTTATCGCTATATGGTCAAGAAGAAGGGGCCAGAAGATGCCGGCGATCGGTAAGAGATACAAAATCGTAACAATTCATTCAATTATAAGTTTTGAAGATTTGGTCGACTCCTTCTTCTGGGAACTGTACTTGCAACAATGGCTGTGGAGATGAAAGAAGCTGTTTTGGTTGCTGATTTCTTTGATCAAATTCAATTTTCTACTTTCGCAAAACAACTTTTATTTGGAATCAAAACAGAGTCAGATATTTGAAATTTTTAAAAATACTCTTTCATTTAGTTTTCTGTTGTTTAACCTGTCGATATTCATCCATCATAGTGCCTTTTCTTCAAAAATCAGTGATATACCAAACCACCTTCCGATTGTAATTTAACTAAAAAATATTGTTCCGAACGGGTATTTGTTATCAGTTAATAGTATCCGTTATTCTCCCAAAAACTGTCACCTCATTACCATTTTCAGCCAAATTTGTCGTCTAGATTCTGTCCCAATATATGATCTGCCTCTTTTGATACTTTATTCATGTTTGATATTAAATAAAAATGTATATTTCAATAAAAAGAGTTAATTAAAAGAAATATTGATAAAGATTACTCTAACAAAAGATGTACAATAACTAAGGAATTTGGAATCCGGAATTCGGACAAAAATCTTTTTCACGGAATCCGGAATTAAAAAATAACACACACACAGAATCCGAAATACTGAAACCGGAAACAGAACATCTCTGGTTTACACTAGTAATAAGTATTTGTACACCGTTACGTCAGAATAGATACCGTAA</canonical>
            <polymorphic>TTCGATAGAACTCCAGAGCCAACAAGACCATTAGGATTTAACAAGAAGAAGTATCAAATGCTGGATCAACTTTTGAAACCAATGAGAACAATGGAAATTGATATGACTGAGTTTGCTGCATTCAAAGCAATTTTCTTCCTCAATCCAGATGCAGATGACGTTGATGCAAATGCCAAGAAAATGTTGAGTGATGGCAGAAGCGCCATTACTAATGCTCTTTATCGCTATATGGTCAAGAAGAAGGGGCCAGAAGATGCCGGCGATCGGTAAGAGATACAAAATCGTAACAATTCATTCAATTATAAGTTTTGAAGATTTGGTCGACTCCTTCTTCTGGGAACTGTACTTGCAACAATGGCTGTGGAGATGAAAGAAGCTGTTTTGGTTGCTGATTTCTTTGATCAAATTCAATTTTCTACTTTCGCAAAACAACTTTTATTTGGAATCAAAACAGAGTCAGATATTTGAAATTTTTAAAAATACTCTTTCATTTAGTTTTYTGTTGTTTAACCTGTCGATATTCATCCATCATAGTGCCTTTTCTTCAAAAATCAGTGATATACCAAACCACCTTCCGATTGTAATTTAACTAAAAAATATTGTTCCGAACGGGTATTTGTTATCAGTTAATAGTATCCGTTATTCTCCCAAAAACTGTCACCTCATTACCATTTTCAGCCAAATTTGTCGTCTAGATTCTGTCCCAATATATGATCTGCCTCTTTTGATACTTTATTCATGTTTGATATTAAATAAAAATGTATATTTCAATAAAAAGAGTTAATTAAAAGAAATATTGATAAAGATTACTCTAACAAAAGATGTACAATAACTAAGGAATTTGGAATCCGGAATTCGGACAAAAATCTTTTTCACGGAATCCGGAATTAAAAAATAACACACACACAGAATCCGAAATACTGAAACCGGAAACAGAACATCTCTGGTTTACACTAGTAATAAGTATTTGTACACCGTTACGTCAGAATAGATACCGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAACAACTTTTATTTGGAATC</pcr_primer_p1>
		<pcr_primer_p2>AAATGGTAATGAGGTGACAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAACAACTTTTATTTGGAATCAAAACAGAGTCAGATATTTGAAATTTTTAAAAATACTCTTTCATTTAGTTTTCTGTTGTTTAACCTGTCGATATTCATCCATCATAGTGCCTTTTCTTCAAAAATCAGTGATATACCAAACCACCTTCCGATTGTAATTTAACTAAAAAATATTGTTCCGAACGGGTATTTGTTATCAGTTAATAGTATCCGTTATTCTCCCAAAAACTGTCACCTCATTACCATTT</canonical_amplicon>
		<polymorphic_amplicon>CAAAACAACTTTTATTTGGAATCAAAACAGAGTCAGATATTTGAAATTTTTAAAAATACTCTTTCATTTAGTTTTYTGTTGTTTAACCTGTCGATATTCATCCATCATAGTGCCTTTTCTTCAAAAATCAGTGATATACCAAACCACCTTCCGATTGTAATTTAACTAAAAAATATTGTTCCGAACGGGTATTTGTTATCAGTTAATAGTATCCGTTATTCTCCCAAAAACTGTCACCTCATTACCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35318</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>52793</contig_pos>
        <strand>+</strand>
        <context>AGTGCCTTTT[C/T]TTCAAAAATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGTTTTCTGTTGTTTAACCTGTCGATATTCATCCATCATAGTGCCTTTT</left_flank>
        <right_flank>TTCAAAAATCAGTGATATACCAAACCACCTTCCGATTGTAATTTAACTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAGAAGTATCAAATGCTGGATCAACTTTTGAAACCAATGAGAACAATGGAAATTGATATGACTGAGTTTGCTGCATTCAAAGCAATTTTCTTCCTCAATCCAGATGCAGATGACGTTGATGCAAATGCCAAGAAAATGTTGAGTGATGGCAGAAGCGCCATTACTAATGCTCTTTATCGCTATATGGTCAAGAAGAAGGGGCCAGAAGATGCCGGCGATCGGTAAGAGATACAAAATCGTAACAATTCATTCAATTATAAGTTTTGAAGATTTGGTCGACTCCTTCTTCTGGGAACTGTACTTGCAACAATGGCTGTGGAGATGAAAGAAGCTGTTTTGGTTGCTGATTTCTTTGATCAAATTCAATTTTCTACTTTCGCAAAACAACTTTTATTTGGAATCAAAACAGAGTCAGATATTTGAAATTTTTAAAAATACTCTTTCATTTAGTTTTCTGTTGTTTAACCTGTCGATATTCATCCATCATAGTGCCTTTTCTTCAAAAATCAGTGATATACCAAACCACCTTCCGATTGTAATTTAACTAAAAAATATTGTTCCGAACGGGTATTTGTTATCAGTTAATAGTATCCGTTATTCTCCCAAAAACTGTCACCTCATTACCATTTTCAGCCAAATTTGTCGTCTAGATTCTGTCCCAATATATGATCTGCCTCTTTTGATACTTTATTCATGTTTGATATTAAATAAAAATGTATATTTCAATAAAAAGAGTTAATTAAAAGAAATATTGATAAAGATTACTCTAACAAAAGATGTACAATAACTAAGGAATTTGGAATCCGGAATTCGGACAAAAATCTTTTTCACGGAATCCGGAATTAAAAAATAACACACACACAGAATCCGAAATACTGAAACCGGAAACAGAACATCTCTGGTTTACACTAGTAATAAGTATTTGTACACCGTTACGTCAGAATAGATACCGTAACTCCAAAAACGAAACATTTCCTGCCCCGCCTCCTTCAATCAAG</canonical>
            <polymorphic>AGAAGAAGTATCAAATGCTGGATCAACTTTTGAAACCAATGAGAACAATGGAAATTGATATGACTGAGTTTGCTGCATTCAAAGCAATTTTCTTCCTCAATCCAGATGCAGATGACGTTGATGCAAATGCCAAGAAAATGTTGAGTGATGGCAGAAGCGCCATTACTAATGCTCTTTATCGCTATATGGTCAAGAAGAAGGGGCCAGAAGATGCCGGCGATCGGTAAGAGATACAAAATCGTAACAATTCATTCAATTATAAGTTTTGAAGATTTGGTCGACTCCTTCTTCTGGGAACTGTACTTGCAACAATGGCTGTGGAGATGAAAGAAGCTGTTTTGGTTGCTGATTTCTTTGATCAAATTCAATTTTCTACTTTCGCAAAACAACTTTTATTTGGAATCAAAACAGAGTCAGATATTTGAAATTTTTAAAAATACTCTTTCATTTAGTTTTCTGTTGTTTAACCTGTCGATATTCATCCATCATAGTGCCTTTTYTTCAAAAATCAGTGATATACCAAACCACCTTCCGATTGTAATTTAACTAAAAAATATTGTTCCGAACGGGTATTTGTTATCAGTTAATAGTATCCGTTATTCTCCCAAAAACTGTCACCTCATTACCATTTTCAGCCAAATTTGTCGTCTAGATTCTGTCCCAATATATGATCTGCCTCTTTTGATACTTTATTCATGTTTGATATTAAATAAAAATGTATATTTCAATAAAAAGAGTTAATTAAAAGAAATATTGATAAAGATTACTCTAACAAAAGATGTACAATAACTAAGGAATTTGGAATCCGGAATTCGGACAAAAATCTTTTTCACGGAATCCGGAATTAAAAAATAACACACACACAGAATCCGAAATACTGAAACCGGAAACAGAACATCTCTGGTTTACACTAGTAATAAGTATTTGTACACCGTTACGTCAGAATAGATACCGTAACTCCAAAAACGAAACATTTCCTGCCCCGCCTCCTTCAATCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAACAACTTTTATTTGGAATC</pcr_primer_p1>
		<pcr_primer_p2>AAATGGTAATGAGGTGACAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAACAACTTTTATTTGGAATCAAAACAGAGTCAGATATTTGAAATTTTTAAAAATACTCTTTCATTTAGTTTTCTGTTGTTTAACCTGTCGATATTCATCCATCATAGTGCCTTTTCTTCAAAAATCAGTGATATACCAAACCACCTTCCGATTGTAATTTAACTAAAAAATATTGTTCCGAACGGGTATTTGTTATCAGTTAATAGTATCCGTTATTCTCCCAAAAACTGTCACCTCATTACCATTT</canonical_amplicon>
		<polymorphic_amplicon>CAAAACAACTTTTATTTGGAATCAAAACAGAGTCAGATATTTGAAATTTTTAAAAATACTCTTTCATTTAGTTTTCTGTTGTTTAACCTGTCGATATTCATCCATCATAGTGCCTTTTYTTCAAAAATCAGTGATATACCAAACCACCTTCCGATTGTAATTTAACTAAAAAATATTGTTCCGAACGGGTATTTGTTATCAGTTAATAGTATCCGTTATTCTCCCAAAAACTGTCACCTCATTACCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35319</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>53134</contig_pos>
        <strand></strand>
        <context>cacggaatcc[G/A]gaattaaaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAAGGAATTTGGAATCCGGAATTCGGACAAAAATCTTTTTCACGGAATCC</left_flank>
        <right_flank>GAATTAAAAAATAACACACACACAGAATCCGAAATACTGAAACCGGAAAC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTGCTGATTTCTTTGATCAAATTCAATTTTCTACTTTCGCAAAACAACTTTTATTTGGAATCAAAACAGAGTCAGATATTTGAAATTTTTAAAAATACTCTTTCATTTAGTTTTCTGTTGTTTAACCTGTCGATATTCATCCATCATAGTGCCTTTTCTTCAAAAATCAGTGATATACCAAACCACCTTCCGATTGTAATTTAACTAAAAAATATTGTTCCGAACGGGTATTTGTTATCAGTTAATAGTATCCGTTATTCTCCCAAAAACTGTCACCTCATTACCATTTTCAGCCAAATTTGTCGTCTAGATTCTGTCCCAATATATGATCTGCCTCTTTTGATACTTTATTCATGTTTGATATTAAATAAAAATGTATATTTCAATAAAAAGAGTTAATTAAAAGAAATATTGATAAAGATTACTCTAACAAAAGATGTACAATAACTAAGGAATTTGGAATCCGGAATTCGGACAAAAATCTTTTTCACGGAATCCGGAATTAAAAAATAACACACACACAGAATCCGAAATACTGAAACCGGAAACAGAACATCTCTGGTTTACACTAGTAATAAGTATTTGTACACCGTTACGTCAGAATAGATACCGTAACTCCAAAAACGAAACATTTCCTGCCCCGCCTCCTTCAATCAAGAAGACCGGGCGCTGCGTGATGTAAAACCCATTGAAATTCGAAAAAATAAACATTTAGCAAATATTGACCTGTATATATATATGTACTCATTTCCCAAAATAAATCGATTCTTATTTTTTTTCTGTATAATCATCTTCTTCTGTTTTTCGTTTGTGTTTTTCCATGCTGATTTTTCTGACCACTGCCTCTGGAAAGCTGTCCAAATAGTTCGTAAAGCAACACCTCGCATTAAAATACTACAGTAACCGGAGAGACAACAGACTAATCCCACTATATAATGCTCTGTGGAAAACAGGAATTCCATATCATAATTTTATACAGTTCTCATTTTTCAATAAATA</canonical>
            <polymorphic>GTTGCTGATTTCTTTGATCAAATTCAATTTTCTACTTTCGCAAAACAACTTTTATTTGGAATCAAAACAGAGTCAGATATTTGAAATTTTTAAAAATACTCTTTCATTTAGTTTTCTGTTGTTTAACCTGTCGATATTCATCCATCATAGTGCCTTTTCTTCAAAAATCAGTGATATACCAAACCACCTTCCGATTGTAATTTAACTAAAAAATATTGTTCCGAACGGGTATTTGTTATCAGTTAATAGTATCCGTTATTCTCCCAAAAACTGTCACCTCATTACCATTTTCAGCCAAATTTGTCGTCTAGATTCTGTCCCAATATATGATCTGCCTCTTTTGATACTTTATTCATGTTTGATATTAAATAAAAATGTATATTTCAATAAAAAGAGTTAATTAAAAGAAATATTGATAAAGATTACTCTAACAAAAGATGTACAATAACTAAGGAATTTGGAATCCGGAATTCGGACAAAAATCTTTTTCACGGAATCCRGAATTAAAAAATAACACACACACAGAATCCGAAATACTGAAACCGGAAACAGAACATCTCTGGTTTACACTAGTAATAAGTATTTGTACACCGTTACGTCAGAATAGATACCGTAACTCCAAAAACGAAACATTTCCTGCCCCGCCTCCTTCAATCAAGAAGACCGGGCGCTGCGTGATGTAAAACCCATTGAAATTCGAAAAAATAAACATTTAGCAAATATTGACCTGTATATATATATGTACTCATTTCCCAAAATAAATCGATTCTTATTTTTTTTCTGTATAATCATCTTCTTCTGTTTTTCGTTTGTGTTTTTCCATGCTGATTTTTCTGACCACTGCCTCTGGAAAGCTGTCCAAATAGTTCGTAAAGCAACACCTCGCATTAAAATACTACAGTAACCGGAGAGACAACAGACTAATCCCACTATATAATGCTCTGTGGAAAACAGGAATTCCATATCATAATTTTATACAGTTCTCATTTTTCAATAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCCGGA</site>
                <isoschizomers>
                    <enzyme>AccIII</enzyme>
                    <enzyme>BseAI</enzyme>
                    <enzyme>BsiMI</enzyme>
                    <enzyme>Bsp13I</enzyme>
                    <enzyme>BspEI</enzyme>
                    <enzyme>BspMII</enzyme>
                    <enzyme>Kpn2I</enzyme>
                    <enzyme>MroI</enzyme>
                </isoschizomers>
                <canonical_bands>503 464 33</canonical_bands>
                <polymorphic_bands>536 464</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>464 362 96 45 33</canonical_bands>
                <polymorphic_bands>464 362 96 78</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>465 241 121 95 45 33</canonical_bands>
                <polymorphic_bands>465 241 121 95 78</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATGATCTGCCTCTTTTGATACT</pcr_primer_p1>
		<pcr_primer_p2>TTACTAGTGTAAACCAGAGATGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATGATCTGCCTCTTTTGATACTTTATTCATGTTTGATATTAAATAAAAATGTATATTTCAATAAAAAGAGTTAATTAAAAGAAATATTGATAAAGATTACTCTAACAAAAGATGTACAATAACTAAGGAATTTGGAATCCGGAATTCGGACAAAAATCTTTTTCACGGAATCCGGAATTAAAAAATAACACACACACAGAATCCGAAATACTGAAACCGGAAACAGAACATCTCTGGTTTACACTAGTAA</canonical_amplicon>
		<polymorphic_amplicon>TATGATCTGCCTCTTTTGATACTTTATTCATGTTTGATATTAAATAAAAATGTATATTTCAATAAAAAGAGTTAATTAAAAGAAATATTGATAAAGATTACTCTAACAAAAGATGTACAATAACTAAGGAATTTGGAATCCGGAATTCGGACAAAAATCTTTTTCACGGAATCCRGAATTAAAAAATAACACACACACAGAATCCGAAATACTGAAACCGGAAACAGAACATCTCTGGTTTACACTAGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35320</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>57529</contig_pos>
        <strand>+</strand>
        <context>ACTTTTCAAG[C/T]CCATCAAACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTTTCCCTGTGTTGAAAACATCTCCGAATTCTTTTTGTAACTTTTCAAG</left_flank>
        <right_flank>CCATCAAACATTGAAATAAAGTTTCGAAATACTTTATAACCATGTAGTTG</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTTCGCACAAAATCATTTGAATTATTCGTTCGTATGATGTTACTGACAACTGGATTGTATTTTGTAGATTTCAGAAGTTGTTCTTTCTTCTCATACGCTTTTGCCATTTCATGAATCATACTTACTCCTCGGCTAAAACTAACTGATACTTCCTTTGATTTTTGAAACTTCAAAACAGGATTATCTTCTGATGGTTTTATATTTTGTCCGATTTCTTTGATATGTTTCTCAACACCGGTTAAGTATTTTCTCATCTCCAAGAACTGTTTGAACAGTTTTTTAGTCCCTTCGAAATGGTTTGTATCCAGAGCAGGTGCCACATATTTCATTGCCTCATTTATAGAATGTGTAGCGAATTTCCCATCTTTGAGACAGGACGAAAAGTTCATGTAATTGGATGTACCCAAATTTTTGAAAACTTTTTCGAATTCCTCTTTTGCATTATCTGCTTTCCCTGTGTTGAAAACATCTCCGAATTCTTTTTGTAACTTTTCAAGTCCATCAAACATTGAAATAAAGTTTCGAAATACTTTATAACCATGTAGTTGTGCAACTTCTTGGACCATTTCACTAACATCCTTTGTAGAGAACGTATGGCTGTTTAAATCATCAAGAAAATGATTGATAACATCAGGATCTATGGTGAGAACCACTTTGTCAACCCAATTCTGGACGTCATGGACCAATGTATTCATTTTCTCGAATACCAATTTCTCAATATCGAAATTTGTGAAGTTCCGATTTCCGGGTTCCAAGGTCACATTAGCATAACAAGAACTGACAGTGTTATTGAGACTATGCAACGCATCGACATCAATATGTTGTGAGCGATCTTCTACTACTATCAGCATCTTTGCGGTGATTTCCAATTCATCACTCGATGCACTGAACTCGGCTTGAAAGTTCTTCCATCGTTCCCTCAGTTTGACCATTCTCTCTCCAAACTCGAAAAATCCATGAAGACTCTTTTCCAGTTCTTCTGTACTTTTTCCTCTAGA</canonical>
            <polymorphic>AGGTTCGCACAAAATCATTTGAATTATTCGTTCGTATGATGTTACTGACAACTGGATTGTATTTTGTAGATTTCAGAAGTTGTTCTTTCTTCTCATACGCTTTTGCCATTTCATGAATCATACTTACTCCTCGGCTAAAACTAACTGATACTTCCTTTGATTTTTGAAACTTCAAAACAGGATTATCTTCTGATGGTTTTATATTTTGTCCGATTTCTTTGATATGTTTCTCAACACCGGTTAAGTATTTTCTCATCTCCAAGAACTGTTTGAACAGTTTTTTAGTCCCTTCGAAATGGTTTGTATCCAGAGCAGGTGCCACATATTTCATTGCCTCATTTATAGAATGTGTAGCGAATTTCCCATCTTTGAGACAGGACGAAAAGTTCATGTAATTGGATGTACCCAAATTTTTGAAAACTTTTTCGAATTCCTCTTTTGCATTATCTGCTTTCCCTGTGTTGAAAACATCTCCGAATTCTTTTTGTAACTTTTCAAGYCCATCAAACATTGAAATAAAGTTTCGAAATACTTTATAACCATGTAGTTGTGCAACTTCTTGGACCATTTCACTAACATCCTTTGTAGAGAACGTATGGCTGTTTAAATCATCAAGAAAATGATTGATAACATCAGGATCTATGGTGAGAACCACTTTGTCAACCCAATTCTGGACGTCATGGACCAATGTATTCATTTTCTCGAATACCAATTTCTCAATATCGAAATTTGTGAAGTTCCGATTTCCGGGTTCCAAGGTCACATTAGCATAACAAGAACTGACAGTGTTATTGAGACTATGCAACGCATCGACATCAATATGTTGTGAGCGATCTTCTACTACTATCAGCATCTTTGCGGTGATTTCCAATTCATCACTCGATGCACTGAACTCGGCTTGAAAGTTCTTCCATCGTTCCCTCAGTTTGACCATTCTCTCTCCAAACTCGAAAAATCCATGAAGACTCTTTTCCAGTTCTTCTGTACTTTTTCCTCTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCTCATTTATAGAATGTGTAGC</pcr_primer_p1>
		<pcr_primer_p2>GTTAGTGAAATGGTCCAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GCCTCATTTATAGAATGTGTAGCGAATTTCCCATCTTTGAGACAGGACGAAAAGTTCATGTAATTGGATGTACCCAAATTTTTGAAAACTTTTTCGAATTCCTCTTTTGCATTATCTGCTTTCCCTGTGTTGAAAACATCTCCGAATTCTTTTTGTAACTTTTCAAGTCCATCAAACATTGAAATAAAGTTTCGAAATACTTTATAACCATGTAGTTGTGCAACTTCTTGGACCATTTCACTAAC</canonical_amplicon>
		<polymorphic_amplicon>GCCTCATTTATAGAATGTGTAGCGAATTTCCCATCTTTGAGACAGGACGAAAAGTTCATGTAATTGGATGTACCCAAATTTTTGAAAACTTTTTCGAATTCCTCTTTTGCATTATCTGCTTTCCCTGTGTTGAAAACATCTCCGAATTCTTTTTGTAACTTTTCAAGYCCATCAAACATTGAAATAAAGTTTCGAAATACTTTATAACCATGTAGTTGTGCAACTTCTTGGACCATTTCACTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35321</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>59328</contig_pos>
        <strand>+</strand>
        <context>GAAGACGTGA[A/G]ACGAATTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAGATATTATGTCGAACAACTGAAGGGAAGAAATCTCCAGAAGACGTGA</left_flank>
        <right_flank>ACGAATTTGAAGTTCTTCATGTATCCCATCGGGTTGCAAATCAAGAAAAC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTTTGGATAGAAGACGATTGGAGAGCGATAGCATTGACGATTCGACTCAATGTAGCGAGTTTGTTATAGACGATGAGAAGTTCTGAGTCTGAAACGTTTCAATTTTTGAATCGCGTCATCAAAATTCCTAACAAACCTCCAGATGATCTTTCATCACGAACCAGCTCAGTTCTCAGACTTTGTTTCGACTTGATACATAAAATGACAAAAATGATGCCTGTTTGAGTCCACATTTGACAGTTTTAAAGTTGAAACAATCTTGTGACTCTTAAATTGTATTTCGATGATTTGTTTCAGATTCTTTTAAACTTACATTGCCACTTATGAACTGTTACATTGCCACTTATGAACTCGTGGATGGCTCTTCGGCGGTTTTTCTATGAGAACCAGTGTGACATAAAAAATCACGTTATATATTTTTGTTTCATCGTGAACTAAAGTGGTAGGTAGATATTATGTCGAACAACTGAAGGGAAGAAATCTCCAGAAGACGTGAGACGAATTTGAAGTTCTTCATGTATCCCATCGGGTTGCAAATCAAGAAAACTTCCTTCTTGAAGATCACAAGCCAAAAAACTATGGAATATGAAAACTGACGCTGATTAACTTGAATCTGAACAACAAAGATGTGTTAAGAAGATACTTTGTTATGTCCTTCTGGTGGCTATGAGACGAGGGATAAACTACTAGTTTATTTACATAGAGAGAACCATTTAATACAGAGTTCAATAAGCTTATATAGCAGTTGCTATCGCCACGTAGATCTGAGGGTTGACGTCATCCAGACAGTTCACGTCACAACACCTCCCCTTCTTCACAAAAAGTCCCTTGTCTACTGCCAATGATCTTCCACGAAGTACCACGACAGCTGCTGCTCAGACTCCACAGCTTTCCTTTTGACTGGATACATCTCAGTCGTTGTTGCATCGATTTTGATATGATCTCCATCTCAAGGGCAACCAGCACGTCGTCCATGAATCCGGTTTTCCTGCAGGTA</canonical>
            <polymorphic>GTTTTTTGGATAGAAGACGATTGGAGAGCGATAGCATTGACGATTCGACTCAATGTAGCGAGTTTGTTATAGACGATGAGAAGTTCTGAGTCTGAAACGTTTCAATTTTTGAATCGCGTCATCAAAATTCCTAACAAACCTCCAGATGATCTTTCATCACGAACCAGCTCAGTTCTCAGACTTTGTTTCGACTTGATACATAAAATGACAAAAATGATGCCTGTTTGAGTCCACATTTGACAGTTTTAAAGTTGAAACAATCTTGTGACTCTTAAATTGTATTTCGATGATTTGTTTCAGATTCTTTTAAACTTACATTGCCACTTATGAACTGTTACATTGCCACTTATGAACTCGTGGATGGCTCTTCGGCGGTTTTTCTATGAGAACCAGTGTGACATAAAAAATCACGTTATATATTTTTGTTTCATCGTGAACTAAAGTGGTAGGTAGATATTATGTCGAACAACTGAAGGGAAGAAATCTCCAGAAGACGTGARACGAATTTGAAGTTCTTCATGTATCCCATCGGGTTGCAAATCAAGAAAACTTCCTTCTTGAAGATCACAAGCCAAAAAACTATGGAATATGAAAACTGACGCTGATTAACTTGAATCTGAACAACAAAGATGTGTTAAGAAGATACTTTGTTATGTCCTTCTGGTGGCTATGAGACGAGGGATAAACTACTAGTTTATTTACATAGAGAGAACCATTTAATACAGAGTTCAATAAGCTTATATAGCAGTTGCTATCGCCACGTAGATCTGAGGGTTGACGTCATCCAGACAGTTCACGTCACAACACCTCCCCTTCTTCACAAAAAGTCCCTTGTCTACTGCCAATGATCTTCCACGAAGTACCACGACAGCTGCTGCTCAGACTCCACAGCTTTCCTTTTGACTGGATACATCTCAGTCGTTGTTGCATCGATTTTGATATGATCTCCATCTCAAGGGCAACCAGCACGTCGTCCATGAATCCGGTTTTCCTGCAGGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTTACATTGCCACTTATGAAC</pcr_primer_p1>
		<pcr_primer_p2>AAGAAGGAAGTTTTCTTGATTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACTTACATTGCCACTTATGAACTGTTACATTGCCACTTATGAACTCGTGGATGGCTCTTCGGCGGTTTTTCTATGAGAACCAGTGTGACATAAAAAATCACGTTATATATTTTTGTTTCATCGTGAACTAAAGTGGTAGGTAGATATTATGTCGAACAACTGAAGGGAAGAAATCTCCAGAAGACGTGAGACGAATTTGAAGTTCTTCATGTATCCCATCGGGTTGCAAATCAAGAAAACTTCCTTCTT</canonical_amplicon>
		<polymorphic_amplicon>AACTTACATTGCCACTTATGAACTGTTACATTGCCACTTATGAACTCGTGGATGGCTCTTCGGCGGTTTTTCTATGAGAACCAGTGTGACATAAAAAATCACGTTATATATTTTTGTTTCATCGTGAACTAAAGTGGTAGGTAGATATTATGTCGAACAACTGAAGGGAAGAAATCTCCAGAAGACGTGARACGAATTTGAAGTTCTTCATGTATCCCATCGGGTTGCAAATCAAGAAAACTTCCTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35322</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>59652</contig_pos>
        <strand>+</strand>
        <context>TTCTTCACAA[A/G]AAGTCCCTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTGACGTCATCCAGACAGTTCACGTCACAACACCTCCCCTTCTTCACAA</left_flank>
        <right_flank>AAGTCCCTTGTCTACTGCCAATGATCTTCCACGAAGTACCACGACAGCTG</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATGAACTGTTACATTGCCACTTATGAACTCGTGGATGGCTCTTCGGCGGTTTTTCTATGAGAACCAGTGTGACATAAAAAATCACGTTATATATTTTTGTTTCATCGTGAACTAAAGTGGTAGGTAGATATTATGTCGAACAACTGAAGGGAAGAAATCTCCAGAAGACGTGAGACGAATTTGAAGTTCTTCATGTATCCCATCGGGTTGCAAATCAAGAAAACTTCCTTCTTGAAGATCACAAGCCAAAAAACTATGGAATATGAAAACTGACGCTGATTAACTTGAATCTGAACAACAAAGATGTGTTAAGAAGATACTTTGTTATGTCCTTCTGGTGGCTATGAGACGAGGGATAAACTACTAGTTTATTTACATAGAGAGAACCATTTAATACAGAGTTCAATAAGCTTATATAGCAGTTGCTATCGCCACGTAGATCTGAGGGTTGACGTCATCCAGACAGTTCACGTCACAACACCTCCCCTTCTTCACAAAAAGTCCCTTGTCTACTGCCAATGATCTTCCACGAAGTACCACGACAGCTGCTGCTCAGACTCCACAGCTTTCCTTTTGACTGGATACATCTCAGTCGTTGTTGCATCGATTTTGATATGATCTCCATCTCAAGGGCAACCAGCACGTCGTCCATGAATCCGGTTTTCCTGCAGGTACTTATGCCTGCTTACCAGTCCATACAGAGCATCCATCCGTTGCTGAATTTTGGAATTTATGTGGAACAGTATACTTTACTAGTATCCACGACCATTTGTCAGAAGTTCATCGATCCTTATTGATCTTCACTCGCGGTTCTTCGATCTTCACTCATTTTTGCTTCGTCGATCTTCACCTCCAACGGCGCTCCCGGCTTTCTGAATGTGATCCCAAGATCTCCATCCACCACGACGGTTTTTTCGATGCCGAATCCACGAACACCGGGGAACTTCTCTTTCCTCTTCCTCGCTCCGCTTCCCACCAGACATCATTGTTCGATGGAT</canonical>
            <polymorphic>TTATGAACTGTTACATTGCCACTTATGAACTCGTGGATGGCTCTTCGGCGGTTTTTCTATGAGAACCAGTGTGACATAAAAAATCACGTTATATATTTTTGTTTCATCGTGAACTAAAGTGGTAGGTAGATATTATGTCGAACAACTGAAGGGAAGAAATCTCCAGAAGACGTGAGACGAATTTGAAGTTCTTCATGTATCCCATCGGGTTGCAAATCAAGAAAACTTCCTTCTTGAAGATCACAAGCCAAAAAACTATGGAATATGAAAACTGACGCTGATTAACTTGAATCTGAACAACAAAGATGTGTTAAGAAGATACTTTGTTATGTCCTTCTGGTGGCTATGAGACGAGGGATAAACTACTAGTTTATTTACATAGAGAGAACCATTTAATACAGAGTTCAATAAGCTTATATAGCAGTTGCTATCGCCACGTAGATCTGAGGGTTGACGTCATCCAGACAGTTCACGTCACAACACCTCCCCTTCTTCACAARAAGTCCCTTGTCTACTGCCAATGATCTTCCACGAAGTACCACGACAGCTGCTGCTCAGACTCCACAGCTTTCCTTTTGACTGGATACATCTCAGTCGTTGTTGCATCGATTTTGATATGATCTCCATCTCAAGGGCAACCAGCACGTCGTCCATGAATCCGGTTTTCCTGCAGGTACTTATGCCTGCTTACCAGTCCATACAGAGCATCCATCCGTTGCTGAATTTTGGAATTTATGTGGAACAGTATACTTTACTAGTATCCACGACCATTTGTCAGAAGTTCATCGATCCTTATTGATCTTCACTCGCGGTTCTTCGATCTTCACTCATTTTTGCTTCGTCGATCTTCACCTCCAACGGCGCTCCCGGCTTTCTGAATGTGATCCCAAGATCTCCATCCACCACGACGGTTTTTTCGATGCCGAATCCACGAACACCGGGGAACTTCTCTTTCCTCTTCCTCGCTCCGCTTCCCACCAGACATCATTGTTCGATGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAACAAAGATGTGTTAAGAAGA</pcr_primer_p1>
		<pcr_primer_p2>AAAGGAAAGCTGTGGAGTCT</pcr_primer_p2>
		<pcr_amplicon_size>281</pcr_amplicon_size>
		<canonical_amplicon>AACAACAAAGATGTGTTAAGAAGATACTTTGTTATGTCCTTCTGGTGGCTATGAGACGAGGGATAAACTACTAGTTTATTTACATAGAGAGAACCATTTAATACAGAGTTCAATAAGCTTATATAGCAGTTGCTATCGCCACGTAGATCTGAGGGTTGACGTCATCCAGACAGTTCACGTCACAACACCTCCCCTTCTTCACAAAAAGTCCCTTGTCTACTGCCAATGATCTTCCACGAAGTACCACGACAGCTGCTGCTCAGACTCCACAGCTTTCCTTT</canonical_amplicon>
		<polymorphic_amplicon>AACAACAAAGATGTGTTAAGAAGATACTTTGTTATGTCCTTCTGGTGGCTATGAGACGAGGGATAAACTACTAGTTTATTTACATAGAGAGAACCATTTAATACAGAGTTCAATAAGCTTATATAGCAGTTGCTATCGCCACGTAGATCTGAGGGTTGACGTCATCCAGACAGTTCACGTCACAACACCTCCCCTTCTTCACAARAAGTCCCTTGTCTACTGCCAATGATCTTCCACGAAGTACCACGACAGCTGCTGCTCAGACTCCACAGCTTTCCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35323</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>59697</contig_pos>
        <strand>+</strand>
        <context>AGTACCACGA[C/T]AGCTGCTGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACAAAAAGTCCCTTGTCTACTGCCAATGATCTTCCACGAAGTACCACGA</left_flank>
        <right_flank>AGCTGCTGCTCAGACTCCACAGCTTTCCTTTTGACTGGATACATCTCAGT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGCGGTTTTTCTATGAGAACCAGTGTGACATAAAAAATCACGTTATATATTTTTGTTTCATCGTGAACTAAAGTGGTAGGTAGATATTATGTCGAACAACTGAAGGGAAGAAATCTCCAGAAGACGTGAGACGAATTTGAAGTTCTTCATGTATCCCATCGGGTTGCAAATCAAGAAAACTTCCTTCTTGAAGATCACAAGCCAAAAAACTATGGAATATGAAAACTGACGCTGATTAACTTGAATCTGAACAACAAAGATGTGTTAAGAAGATACTTTGTTATGTCCTTCTGGTGGCTATGAGACGAGGGATAAACTACTAGTTTATTTACATAGAGAGAACCATTTAATACAGAGTTCAATAAGCTTATATAGCAGTTGCTATCGCCACGTAGATCTGAGGGTTGACGTCATCCAGACAGTTCACGTCACAACACCTCCCCTTCTTCACAAAAAGTCCCTTGTCTACTGCCAATGATCTTCCACGAAGTACCACGACAGCTGCTGCTCAGACTCCACAGCTTTCCTTTTGACTGGATACATCTCAGTCGTTGTTGCATCGATTTTGATATGATCTCCATCTCAAGGGCAACCAGCACGTCGTCCATGAATCCGGTTTTCCTGCAGGTACTTATGCCTGCTTACCAGTCCATACAGAGCATCCATCCGTTGCTGAATTTTGGAATTTATGTGGAACAGTATACTTTACTAGTATCCACGACCATTTGTCAGAAGTTCATCGATCCTTATTGATCTTCACTCGCGGTTCTTCGATCTTCACTCATTTTTGCTTCGTCGATCTTCACCTCCAACGGCGCTCCCGGCTTTCTGAATGTGATCCCAAGATCTCCATCCACCACGACGGTTTTTTCGATGCCGAATCCACGAACACCGGGGAACTTCTCTTTCCTCTTCCTCGCTCCGCTTCCCACCAGACATCATTGTTCGATGGATCCAGCTTCCATCATCTCATTCTGATCGCCACTGTTATGTCCTTAT</canonical>
            <polymorphic>CGGCGGTTTTTCTATGAGAACCAGTGTGACATAAAAAATCACGTTATATATTTTTGTTTCATCGTGAACTAAAGTGGTAGGTAGATATTATGTCGAACAACTGAAGGGAAGAAATCTCCAGAAGACGTGAGACGAATTTGAAGTTCTTCATGTATCCCATCGGGTTGCAAATCAAGAAAACTTCCTTCTTGAAGATCACAAGCCAAAAAACTATGGAATATGAAAACTGACGCTGATTAACTTGAATCTGAACAACAAAGATGTGTTAAGAAGATACTTTGTTATGTCCTTCTGGTGGCTATGAGACGAGGGATAAACTACTAGTTTATTTACATAGAGAGAACCATTTAATACAGAGTTCAATAAGCTTATATAGCAGTTGCTATCGCCACGTAGATCTGAGGGTTGACGTCATCCAGACAGTTCACGTCACAACACCTCCCCTTCTTCACAAAAAGTCCCTTGTCTACTGCCAATGATCTTCCACGAAGTACCACGAYAGCTGCTGCTCAGACTCCACAGCTTTCCTTTTGACTGGATACATCTCAGTCGTTGTTGCATCGATTTTGATATGATCTCCATCTCAAGGGCAACCAGCACGTCGTCCATGAATCCGGTTTTCCTGCAGGTACTTATGCCTGCTTACCAGTCCATACAGAGCATCCATCCGTTGCTGAATTTTGGAATTTATGTGGAACAGTATACTTTACTAGTATCCACGACCATTTGTCAGAAGTTCATCGATCCTTATTGATCTTCACTCGCGGTTCTTCGATCTTCACTCATTTTTGCTTCGTCGATCTTCACCTCCAACGGCGCTCCCGGCTTTCTGAATGTGATCCCAAGATCTCCATCCACCACGACGGTTTTTTCGATGCCGAATCCACGAACACCGGGGAACTTCTCTTTCCTCTTCCTCGCTCCGCTTCCCACCAGACATCATTGTTCGATGGATCCAGCTTCCATCATCTCATTCTGATCGCCACTGTTATGTCCTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAGNNNCTG</site>
                <isoschizomers>
                    <enzyme>AlwNI</enzyme>
                    <enzyme>CaiI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAACAAAGATGTGTTAAGAAGA</pcr_primer_p1>
		<pcr_primer_p2>GCAACAACGACTGAGATGTAT</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>AACAACAAAGATGTGTTAAGAAGATACTTTGTTATGTCCTTCTGGTGGCTATGAGACGAGGGATAAACTACTAGTTTATTTACATAGAGAGAACCATTTAATACAGAGTTCAATAAGCTTATATAGCAGTTGCTATCGCCACGTAGATCTGAGGGTTGACGTCATCCAGACAGTTCACGTCACAACACCTCCCCTTCTTCACAAAAAGTCCCTTGTCTACTGCCAATGATCTTCCACGAAGTACCACGACAGCTGCTGCTCAGACTCCACAGCTTTCCTTTTGACTGGATACATCTCAGTCGTTGTTGC</canonical_amplicon>
		<polymorphic_amplicon>AACAACAAAGATGTGTTAAGAAGATACTTTGTTATGTCCTTCTGGTGGCTATGAGACGAGGGATAAACTACTAGTTTATTTACATAGAGAGAACCATTTAATACAGAGTTCAATAAGCTTATATAGCAGTTGCTATCGCCACGTAGATCTGAGGGTTGACGTCATCCAGACAGTTCACGTCACAACACCTCCCCTTCTTCACAAAAAGTCCCTTGTCTACTGCCAATGATCTTCCACGAAGTACCACGAYAGCTGCTGCTCAGACTCCACAGCTTTCCTTTTGACTGGATACATCTCAGTCGTTGTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35324</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>61476</contig_pos>
        <strand>+</strand>
        <context>ACCTGGAAGA[C/T]GTTATCAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAACTGGAGCACCCGGAGAGTTGCTACCAGGAAATGGCATACCTGGAAGA</left_flank>
        <right_flank>GTTATCAATAGAATAAAGAAGTGAACGGTATGCAAAAAAAACGGTCAACC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGATTTGGTGAACTTTCGGTTGCAATACTTGCAAATGAACTCCTTCTTTGGACGGGTGCGTGGAATATGGTCTGGGCGATGGGGTGGTTTCAGAAACCTGGAAAATAAAACTTCAGATAACGTATCCAGAAACTTTCAACATTTAACTACCGTAGCCTTTTAAAAATCACTTACCACGGCGTGTCGAATTGCTTGAAGAGCTGTGCTTGGATTTGGAATTGAAGCATGTTCTCAACAGTAAGTGGAAGTGGTACAGAAGGTGATGAGACACTTGGTGTTGGAGATGGAGTTGAGGATGGACTCAAATTCAAAGAGTTCAGCCATGCTACGAGGTCAGCCGATTGATAGTTCTCTTCCGGTGCTGGGGTCTGTTGACGTAAGAAGTTTTGGAAAACCATTTTCTGTTGCTCCAACATCAACATACGAAAGACTTCCTCTGTTGATGGGACAACTGGAGCACCCGGAGAGTTGCTACCAGGAAATGGCATACCTGGAAGATGTTATCAATAGAATAAAGAAGTGAACGGTATGCAAAAAAAACGGTCAACCGAGAGCACACAGAACAGAGTATATTCAAATGATGGGACCCAGAAGGTCATAGAGAGTGTGATGAAACATGGAGAGTAGAAAATATGATAAGGAATTGCTGATAAGTCTAAGAAAGGAACTTGATCAGAGAAATAGCGGGTAATGAGAAGATAAGCAGAGAGTTGGTAGGTGCGACACTGTGCCACCTGTTGACGATTTATGGAGAGTCAATGGGTCTGGAAGGAAGAAGAAAATAGGTTAGGAGAGAGAAAGAGAGAAGGGAAGAAGACTATTTTTGGGTTTTCTCAGAAAATATAGAAAATAGCTATTTCGAAAGATGGAGTTATAAACTACAGTACCGGTCAATAGGATATACAAAAAAAATAGTTTTCAGTTGATTTTCGGCCATTTTGACCATTTTCCGGAGTCTGGAGCTCGACTGTCAAGTTTCCGATCACTTTCAAAATTTTG</canonical>
            <polymorphic>AGGATTTGGTGAACTTTCGGTTGCAATACTTGCAAATGAACTCCTTCTTTGGACGGGTGCGTGGAATATGGTCTGGGCGATGGGGTGGTTTCAGAAACCTGGAAAATAAAACTTCAGATAACGTATCCAGAAACTTTCAACATTTAACTACCGTAGCCTTTTAAAAATCACTTACCACGGCGTGTCGAATTGCTTGAAGAGCTGTGCTTGGATTTGGAATTGAAGCATGTTCTCAACAGTAAGTGGAAGTGGTACAGAAGGTGATGAGACACTTGGTGTTGGAGATGGAGTTGAGGATGGACTCAAATTCAAAGAGTTCAGCCATGCTACGAGGTCAGCCGATTGATAGTTCTCTTCCGGTGCTGGGGTCTGTTGACGTAAGAAGTTTTGGAAAACCATTTTCTGTTGCTCCAACATCAACATACGAAAGACTTCCTCTGTTGATGGGACAACTGGAGCACCCGGAGAGTTGCTACCAGGAAATGGCATACCTGGAAGAYGTTATCAATAGAATAAAGAAGTGAACGGTATGCAAAAAAAACGGTCAACCGAGAGCACACAGAACAGAGTATATTCAAATGATGGGACCCAGAAGGTCATAGAGAGTGTGATGAAACATGGAGAGTAGAAAATATGATAAGGAATTGCTGATAAGTCTAAGAAAGGAACTTGATCAGAGAAATAGCGGGTAATGAGAAGATAAGCAGAGAGTTGGTAGGTGCGACACTGTGCCACCTGTTGACGATTTATGGAGAGTCAATGGGTCTGGAAGGAAGAAGAAAATAGGTTAGGAGAGAGAAAGAGAGAAGGGAAGAAGACTATTTTTGGGTTTTCTCAGAAAATATAGAAAATAGCTATTTCGAAAGATGGAGTTATAAACTACAGTACCGGTCAATAGGATATACAAAAAAAATAGTTTTCAGTTGATTTTCGGCCATTTTGACCATTTTCCGGAGTCTGGAGCTCGACTGTCAAGTTTCCGATCACTTTCAAAATTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTGTTGACGTAAGAAGTTTTG</pcr_primer_p1>
		<pcr_primer_p2>GTTTCATCACACTCTCTATGACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCTGTTGACGTAAGAAGTTTTGGAAAACCATTTTCTGTTGCTCCAACATCAACATACGAAAGACTTCCTCTGTTGATGGGACAACTGGAGCACCCGGAGAGTTGCTACCAGGAAATGGCATACCTGGAAGATGTTATCAATAGAATAAAGAAGTGAACGGTATGCAAAAAAAACGGTCAACCGAGAGCACACAGAACAGAGTATATTCAAATGATGGGACCCAGAAGGTCATAGAGAGTGTGATGAAAC</canonical_amplicon>
		<polymorphic_amplicon>GTCTGTTGACGTAAGAAGTTTTGGAAAACCATTTTCTGTTGCTCCAACATCAACATACGAAAGACTTCCTCTGTTGATGGGACAACTGGAGCACCCGGAGAGTTGCTACCAGGAAATGGCATACCTGGAAGAYGTTATCAATAGAATAAAGAAGTGAACGGTATGCAAAAAAAACGGTCAACCGAGAGCACACAGAACAGAGTATATTCAAATGATGGGACCCAGAAGGTCATAGAGAGTGTGATGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35325</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>87058</contig_pos>
        <strand>+</strand>
        <context>TTTTCTATTT[C/T]CCTCTTCCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCAACTGATGAAATTTTCTTTTTTGCTTCTTCTGTTTTTTTCTATTT</left_flank>
        <right_flank>CCTCTTCCTAAAAAACGTCTAGACCCGTTCGAAGTAATTAGTTTTTGAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCCCACATTTACCGAGTAATTTCAATGCGCGTTGCGGCCGAAAATTCGACAATAGGCGGAGCTAAGGTCCGGTAGCCAAATTCTCAAATGCACATTTAAAATTAATCACCGTTCGTAATTATTTTCTAGCCGATTTTTTTTCGATTTTTCCATAAATTTCATTGATTTTTAACTTTTTTAATCCGACAAATCACAGAAAAATTCATTAAACAATGAAATCCAGTGAAAATCAGATAAAATTTAAAAAAATGAGAAAAAAGTCTTATTCTGAGCTTGAAAATTACACTAAGGATTCCAAAATGAAGACTCTAAACAACGCGAAAATTCGTTTTCCAATATATATTCCAAAATGTGGTATGAATCTCATTCGAAAAACGCGGAACTTGTGCTCTTCAAATAAATTTTGTCACAACATCCCAACCAATTTTCCGTAGCCCGAGGGCGTTTTTTTCAACTGATGAAATTTTCTTTTTTGCTTCTTCTGTTTTTTTCTATTTTCCTCTTCCTAAAAAACGTCTAGACCCGTTCGAAGTAATTAGTTTTTGAACAATATCCTGGTAAACCATAAATCATGCTGCTCCGAAATTCGGGTGTTGCTCGAAATGAGTGGAAAAGAATGAGAAAAAAGGTAGAAAGGACCGAAAAGTTTTGGCCGGATAAAGTGTGTAGGGTAAAAGCCAATGAGGCGAATGAAAATGAAAAAGAAATGACGAGGAGTCGTAGAATGGGTGGGAGAGCAAAAAAATGAAATAGGGAAAGGCGAACAAAAAAGAACGTTCAGAGATGAAATTTTGAGATGAGAAGGAGCGCTAAGAAAAAAAGAAGACACGATTTTTCTCTCTGAAAATCTTCTTGTGATGTGAAAGAGAAGTTGTGTGTATGTGACTGAGTTTGAAAGGAACATGTCAAATGGATTCAAGCAAAACATCTGAGTGTGTATGTGTTATGGAATGAATTTTCAGATAAAAAATTCAAGAATTTTCAGTTTTAAATTTGTG</canonical>
            <polymorphic>TTGCCCACATTTACCGAGTAATTTCAATGCGCGTTGCGGCCGAAAATTCGACAATAGGCGGAGCTAAGGTCCGGTAGCCAAATTCTCAAATGCACATTTAAAATTAATCACCGTTCGTAATTATTTTCTAGCCGATTTTTTTTCGATTTTTCCATAAATTTCATTGATTTTTAACTTTTTTAATCCGACAAATCACAGAAAAATTCATTAAACAATGAAATCCAGTGAAAATCAGATAAAATTTAAAAAAATGAGAAAAAAGTCTTATTCTGAGCTTGAAAATTACACTAAGGATTCCAAAATGAAGACTCTAAACAACGCGAAAATTCGTTTTCCAATATATATTCCAAAATGTGGTATGAATCTCATTCGAAAAACGCGGAACTTGTGCTCTTCAAATAAATTTTGTCACAACATCCCAACCAATTTTCCGTAGCCCGAGGGCGTTTTTTTCAACTGATGAAATTTTCTTTTTTGCTTCTTCTGTTTTTTTCTATTTYCCTCTTCCTAAAAAACGTCTAGACCCGTTCGAAGTAATTAGTTTTTGAACAATATCCTGGTAAACCATAAATCATGCTGCTCCGAAATTCGGGTGTTGCTCGAAATGAGTGGAAAAGAATGAGAAAAAAGGTAGAAAGGACCGAAAAGTTTTGGCCGGATAAAGTGTGTAGGGTAAAAGCCAATGAGGCGAATGAAAATGAAAAAGAAATGACGAGGAGTCGTAGAATGGGTGGGAGAGCAAAAAAATGAAATAGGGAAAGGCGAACAAAAAAGAACGTTCAGAGATGAAATTTTGAGATGAGAAGGAGCGCTAAGAAAAAAAGAAGACACGATTTTTCTCTCTGAAAATCTTCTTGTGATGTGAAAGAGAAGTTGTGTGTATGTGACTGAGTTTGAAAGGAACATGTCAAATGGATTCAAGCAAAACATCTGAGTGTGTATGTGTTATGGAATGAATTTTCAGATAAAAAATTCAAGAATTTTCAGTTTTAAATTTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTTGTGCTCTTCAAATAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTCATTCTTTTCCACTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAACTTGTGCTCTTCAAATAAATTTTGTCACAACATCCCAACCAATTTTCCGTAGCCCGAGGGCGTTTTTTTCAACTGATGAAATTTTCTTTTTTGCTTCTTCTGTTTTTTTCTATTTTCCTCTTCCTAAAAAACGTCTAGACCCGTTCGAAGTAATTAGTTTTTGAACAATATCCTGGTAAACCATAAATCATGCTGCTCCGAAATTCGGGTGTTGCTCGAAATGAGTGGAAAAGAATGAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAACTTGTGCTCTTCAAATAAATTTTGTCACAACATCCCAACCAATTTTCCGTAGCCCGAGGGCGTTTTTTTCAACTGATGAAATTTTCTTTTTTGCTTCTTCTGTTTTTTTCTATTTYCCTCTTCCTAAAAAACGTCTAGACCCGTTCGAAGTAATTAGTTTTTGAACAATATCCTGGTAAACCATAAATCATGCTGCTCCGAAATTCGGGTGTTGCTCGAAATGAGTGGAAAAGAATGAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35326</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>172899</contig_pos>
        <strand>+</strand>
        <context>TTCCAACTAC[C/T]ACTCATTGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTCTGTTTCATTTATTTTTCAGACATCTCATGAACCACTTCCAACTAC</left_flank>
        <right_flank>ACTCATTGTATCGTGAAAACAGATGAGAATGGGATTTTAGAGTCTGATGA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCAATAATAAGTATTCGGAGCATACTGTTTTCATTTTCAGAGTTTGGAAATACTGGCCTGCATGTGGCAACTAAACGAGGTCACTATCAACTGGTGGATATTCTCATTCGACATGGAGCTGATCGCACACTTTTGAACGCTGAGAACAAGACTCCGGAGCAGATGATCAAAGTGATGAATACAACAATCAAAAATGAAGAAGAGAAAGAACAAGTGGATAAGTACAAGAAAGTCGAAATGATCTATAATAAGTATCGAAAGAAGAAATTTGGAAAACGTAAGGATGTGAATGAAGATATACATCGTTTCTTTGTCAATGTTTAGGTGTACCGAATACGTTTCCAACCACATCTTTCCATATTTACATTGACGATCGGACCGAGGAGAAAGTCACCTATAAGTTCATGGTCAAATTTGAATCTATTGTATGTTCTGAAAATTTCTTATTTATTCTGTTTCATTTATTTTTCAGACATCTCATGAACCACTTCCAACTACTACTCATTGTATCGTGAAAACAGATGAGAATGGGATTTTAGAGTCTGATGATTTCAATCTGCTCTCTTGGATTTTCAATGGGGTGATAATAGTGAAAGAATCCTGGATGACTGATTGTTTGCAAAATCAGAATCTGATTTCTAAAGACATTGACTATTTGGTGAATACGGTAAAATACAATGGTGTAGTCTACGATAACGCTATTCTCCCTTGGAGTTTAGCAATGGCAAAAGGAACGATGCCATATTTGTACGGTGTTCAAGTAGCAGTGGTTATGAAGGACTATCCTAATTGTAAGATAGATTTAAAATTGAATAATAATTTTGCTTCTTTTCCAGTATTCACTCTTGCTGCAGTGGTTTCCAATCTTGGCGGCTTCATGCTGAATCAGTTTCCAGAGAAGGATCAATTCAACAAAGGTTCACACCCCTATCTTCATGAGAACCTGGGCCCAATTTTTCTGCTTCATGATGGAACTGTAAGAGTTCTTCAGAGTTCTAT</canonical>
            <polymorphic>TGCAATAATAAGTATTCGGAGCATACTGTTTTCATTTTCAGAGTTTGGAAATACTGGCCTGCATGTGGCAACTAAACGAGGTCACTATCAACTGGTGGATATTCTCATTCGACATGGAGCTGATCGCACACTTTTGAACGCTGAGAACAAGACTCCGGAGCAGATGATCAAAGTGATGAATACAACAATCAAAAATGAAGAAGAGAAAGAACAAGTGGATAAGTACAAGAAAGTCGAAATGATCTATAATAAGTATCGAAAGAAGAAATTTGGAAAACGTAAGGATGTGAATGAAGATATACATCGTTTCTTTGTCAATGTTTAGGTGTACCGAATACGTTTCCAACCACATCTTTCCATATTTACATTGACGATCGGACCGAGGAGAAAGTCACCTATAAGTTCATGGTCAAATTTGAATCTATTGTATGTTCTGAAAATTTCTTATTTATTCTGTTTCATTTATTTTTCAGACATCTCATGAACCACTTCCAACTACYACTCATTGTATCGTGAAAACAGATGAGAATGGGATTTTAGAGTCTGATGATTTCAATCTGCTCTCTTGGATTTTCAATGGGGTGATAATAGTGAAAGAATCCTGGATGACTGATTGTTTGCAAAATCAGAATCTGATTTCTAAAGACATTGACTATTTGGTGAATACGGTAAAATACAATGGTGTAGTCTACGATAACGCTATTCTCCCTTGGAGTTTAGCAATGGCAAAAGGAACGATGCCATATTTGTACGGTGTTCAAGTAGCAGTGGTTATGAAGGACTATCCTAATTGTAAGATAGATTTAAAATTGAATAATAATTTTGCTTCTTTTCCAGTATTCACTCTTGCTGCAGTGGTTTCCAATCTTGGCGGCTTCATGCTGAATCAGTTTCCAGAGAAGGATCAATTCAACAAAGGTTCACACCCCTATCTTCATGAGAACCTGGGCCCAATTTTTCTGCTTCATGATGGAACTGTAAGAGTTCTTCAGAGTTCTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACCACATCTTTCCATATTTAC</pcr_primer_p1>
		<pcr_primer_p2>ACTATTATCACCCCATTGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAACCACATCTTTCCATATTTACATTGACGATCGGACCGAGGAGAAAGTCACCTATAAGTTCATGGTCAAATTTGAATCTATTGTATGTTCTGAAAATTTCTTATTTATTCTGTTTCATTTATTTTTCAGACATCTCATGAACCACTTCCAACTACTACTCATTGTATCGTGAAAACAGATGAGAATGGGATTTTAGAGTCTGATGATTTCAATCTGCTCTCTTGGATTTTCAATGGGGTGATAATAGT</canonical_amplicon>
		<polymorphic_amplicon>CAACCACATCTTTCCATATTTACATTGACGATCGGACCGAGGAGAAAGTCACCTATAAGTTCATGGTCAAATTTGAATCTATTGTATGTTCTGAAAATTTCTTATTTATTCTGTTTCATTTATTTTTCAGACATCTCATGAACCACTTCCAACTACYACTCATTGTATCGTGAAAACAGATGAGAATGGGATTTTAGAGTCTGATGATTTCAATCTGCTCTCTTGGATTTTCAATGGGGTGATAATAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35327</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>184285</contig_pos>
        <strand>+</strand>
        <context>GGGGAAAAGM[A/C]TTTTAATGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATCTTGACGGTCATTATGAGATCGTTGAGCCAAAGTTCTGGGGAAAAGC</left_flank>
        <right_flank>TTTTAATGGACACTTTGAAAGCTATAAATAAATTTATCCTTTTTTCAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGCATTCCCAGAATAGAGCATAGTCGTTCTTGTTGGCAGAAGCAACTTTTAATAGTTCGGTCCATTTTGAAAGCCTGATCGTAGAATCTGATGTACTTCGACTCGCAACCACCTCCACAGTTGTATGGATTACAGTCTCCATCGATTGGTCCTTTACACCATTTTGAATTGTATTCGTATTTCCTTGGTTGGCTGAAACAATACCGTTCAAAGGTCAATGCAAGTGTAACCGGATCTGAGATTGTCAACTACGATATCCCTGATATTTTACACTTTTTTTGCTACAACTCTCCCACTTTTTTCTCATTTTCCCAACACACTCATCGACCTTTTTGGAATCCCTAAATGTAACATTTTATTTAGTTGCGAGTGTGATCATCACATCTGGTTGACGGCAAGCGGGGGAGACCGAAAGACCGCCCGTATCGCTTGAAAAAAAGAGGAAGAGATCTTGACGGTCATTATGAGATCGTTGAGCCAAAGTTCTGGGGAAAAGCATTTTAATGGACACTTTGAAAGCTATAAATAAATTTATCCTTTTTTCAAAAATGTCAAGGTTTTCATGTGAAGTGTCAATCAGAGTTATCAGTTGAAATAAGCTTTCTTCTTTTATGTCCAATGTTTGGAATGACGTATTTGTATAACTGAATTTCAAGTTTACTTCTGACTGCAAAAGGTTGTTGGTCAGCGACCTCAAAGTGTTTCGGACTACAGTAATCTTGTCTTTAAGATCTTTTTATTACCACCAAAACATGAATTCAAAAGTCTGAATTCATTAAACAGTACCTGGACAAACTGTTTGAAGATGTTTCAACTATTTCCAACTGCTTGAAAAGTAATACCAAAGTGAGAAGTAGGTTCCTGATTGATAGTGTCATCAGTAGTTGTTGATCTCTGAAGATTAAATGATACTGATAAGAAAAAAGAGCAAGGGAGTGAAATGAAGATGGGGGACTCCAAGGAAGACGAAGAAGCTTGACAACTGACACTGGTCAGAA</canonical>
            <polymorphic>CATGCATTCCCAGAATAGAGCATAGTCGTTCTTGTTGGCAGAAGCAACTTTTAATAGTTCGGTCCATTTTGAAAGCCTGATCGTAGAATCTGATGTACTTCGACTCGCAACCACCTCCACAGTTGTATGGATTACAGTCTCCATCGATTGGTCCTTTACACCATTTTGAATTGTATTCGTATTTCCTTGGTTGGCTGAAACAATACCGTTCAAAGGTCAATGCAAGTGTAACCGGATCTGAGATTGTCAACTACGATATCCCTGATATTTTACACTTTTTTTGCTACAACTCTCCCACTTTTTTCTCATTTTCCCAACACACTCATCGACCTTTTTGGAATCCCTAAATGTAACATTTTATTTAGTTGCGAGTGTGATCATCACATCTGGTTGACGGCAAGCGGGGGAGACCGAAAGACCGCCCGTATCGCTTGAAAAAAAGAGGAAGAGATCTTGACGGTCATTATGAGATCGTTGAGCCAAAGTTCTGGGGAAAAGCMTTTTAATGGACACTTTGAAAGCTATAAATAAATTTATCCTTTTTTCAAAAATGTCAAGGTTTTCATGTGAAGTGTCAATCAGAGTTATCAGTTGAAATAAGCTTTCTTCTTTTATGTCCAATGTTTGGAATGACGTATTTGTATAACTGAATTTCAAGTTTACTTCTGACTGCAAAAGGTTGTTGGTCAGCGACCTCAAAGTGTTTCGGACTACAGTAATCTTGTCTTTAAGATCTTTTTATTACCACCAAAACATGAATTCAAAAGTCTGAATTCATTAAACAGTACCTGGACAAACTGTTTGAAGATGTTTCAACTATTTCCAACTGCTTGAAAAGTAATACCAAAGTGAGAAGTAGGTTCCTGATTGATAGTGTCATCAGTAGTTGTTGATCTCTGAAGATTAAATGATACTGATAAGAAAAAAGAGCAAGGGAGTGAAATGAAGATGGGGGACTCCAAGGAAGACGAAGAAGCTTGACAACTGACACTGGTCAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACATTTTATTTAGTTGCGAGTG</pcr_primer_p1>
		<pcr_primer_p2>TCAACTGATAACTCTGATTGACA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AACATTTTATTTAGTTGCGAGTGTGATCATCACATCTGGTTGACGGCAAGCGGGGGAGACCGAAAGACCGCCCGTATCGCTTGAAAAAAAGAGGAAGAGATCTTGACGGTCATTATGAGATCGTTGAGCCAAAGTTCTGGGGAAAAGCATTTTAATGGACACTTTGAAAGCTATAAATAAATTTATCCTTTTTTCAAAAATGTCAAGGTTTTCATGTGAAGTGTCAATCAGAGTTATCAGTTGA</canonical_amplicon>
		<polymorphic_amplicon>AACATTTTATTTAGTTGCGAGTGTGATCATCACATCTGGTTGACGGCAAGCGGGGGAGACCGAAAGACCGCCCGTATCGCTTGAAAAAAAGAGGAAGAGATCTTGACGGTCATTATGAGATCGTTGAGCCAAAGTTCTGGGGAAAAGCMTTTTAATGGACACTTTGAAAGCTATAAATAAATTTATCCTTTTTTCAAAAATGTCAAGGTTTTCATGTGAAGTGTCAATCAGAGTTATCAGTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35328</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>189430</contig_pos>
        <strand>+</strand>
        <context>AGAAGGAAGA[C/T]ATGGAAAGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGA</left_flank>
        <right_flank>ATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACGACTCCTTCCCAAAAAATTTAATAAAGTTGAGTGTTAGATGTGGGATGTTTGTCCGTTGCAACGAATGGTAGCTCCTGTGACGAAGGAACTGAGGTCTTTGGCAGATTGGGCAAAGCTGGAAGAAAACATATGAGACTACCATTTTTTTTGAAAGGAAACTTACAGCTGAGCAATTCCACAATCGGCATCAGTGAACATGTATTTGAGAACACTTGCTCCTTCGAATCCAGTGGTCACTTGTCGATGGGCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAGCCCTTTTATACCAGTTCAAGTGTTGACTGACCATTTCACTTTTTATATGACTCTATTGTTAAGGTTGTTTGATATTAACACATTTACTGTAGTCGTCCTGATCAAATAGTACTACTGTTTGATGACACTAGGAAATTTGTTGGTTGGAAAAATGCAAATCATGTTGTGGTTTCTAAGAGATATTATTCTCGTACAGAAAAATCGGAGCTGTGGAAGAGATACTTCGGTAGGCCGAAGCTCCCACAACGAAAACTACGGTAGTTTATTTTTCGAATTTTTTCGCTCGTTTTTCGCCGAGTTTTCCGTTTTTTTTCTCAAAAAAATCGGAAAATAAAAATTTTCGACAATGAAAAAAAGACGGAAAAAATACGAAAATCGGGAAAATTAATCCAGAAAATTAAACTATTTTAGATTACTGTAGTTGTCTTCGG</canonical>
            <polymorphic>AAACGACTCCTTCCCAAAAAATTTAATAAAGTTGAGTGTTAGATGTGGGATGTTTGTCCGTTGCAACGAATGGTAGCTCCTGTGACGAAGGAACTGAGGTCTTTGGCAGATTGGGCAAAGCTGGAAGAAAACATATGAGACTACCATTTTTTTTGAAAGGAAACTTACAGCTGAGCAATTCCACAATCGGCATCAGTGAACATGTATTTGAGAACACTTGCTCCTTCGAATCCAGTGGTCACTTGTCGATGGGCTTTGTCTAGAAGTTTTTGGTACTCCTCGGTGAGCTCGTTCTCGATTTTCGAGAATTCCACTTCACCAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGAYATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAGCCCTTTTATACCAGTTCAAGTGTTGACTGACCATTTCACTTTTTATATGACTCTATTGTTAAGGTTGTTTGATATTAACACATTTACTGTAGTCGTCCTGATCAAATAGTACTACTGTTTGATGACACTAGGAAATTTGTTGGTTGGAAAAATGCAAATCATGTTGTGGTTTCTAAGAGATATTATTCTCGTACAGAAAAATCGGAGCTGTGGAAGAGATACTTCGGTAGGCCGAAGCTCCCACAACGAAAACTACGGTAGTTTATTTTTCGAATTTTTTCGCTCGTTTTTCGCCGAGTTTTCCGTTTTTTTTCTCAAAAAAATCGGAAAATAAAAATTTTCGACAATGAAAAAAAGACGGAAAAAATACGAAAATCGGGAAAATTAATCCAGAAAATTAAACTATTTTAGATTACTGTAGTTGTCTTCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>299 271 229 201</canonical_bands>
                <polymorphic_bands>528 271 201</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGCAGATGTCAAAGTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>CTGAATAAAATCTTCAAAGCATAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGACATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAG</canonical_amplicon>
		<polymorphic_amplicon>CAGCAGATGTCAAAGTTGTTTGAAGTTCAATGTGCACGATGGTGGATCCTCCCGCTGAACGACGTTTACGATCACCGGGGGGTTTGTGTGAAGAAGTATCCACAGTAGCTGGAGTCTCGGTGCTGTGCAAGTTGCCGCACATTTCAGCCATTCCAACGAAAGCAGCGAACAGAAGGAAGAYATGGAAAGCAGCAGACATTGTTGAGTAGTGGAGAAGTTGAGAAACTTATGCTTTGAAGATTTTATTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35329</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>233009</contig_pos>
        <strand></strand>
        <context>GCAGTAGGAC[C/T]AGATGGACAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTCCTGCCAACCGATGCTGACGGAAACTACATCTACCCAGCAGTAGGAC</left_flank>
        <right_flank>AGATGGACAAGTCCTACCAACAGACGATTCTGGAAAACCTGTGTACCCAG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTTGGACCAGACGGACAAGTATTGCCAACTGATTCCACTGGAAAGACTGTTCATCCAGTTCGCGGACCAGATGGAACACCGCTTCCAACTGATGCTTCTGGAGCAGTTATTGGACCAGACGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAAGATGGATCCCCATTACCAACTGATAACGAAGGAAATTACGTTCTTGTTCCAACAGAAGACGATTCAGCGAAGGCTCTTCCAACTGATGATTCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACACCACTTGGAACTGATGCTTCAGGAAACTTTGTTACCGATGAAGGGGAGAGCATTGACAAGAATGAGGATGGCAAACCAACTGGACCAGATGGGCAGGTAAACATCATTTCTGAAAACTATTTGTGGAACACATTTAATTTGAATATTTCAGGTCCTGCCAACCGATGCTGACGGAAACTACATCTACCCAGCAGTAGGACCAGATGGACAAGTCCTACCAACAGACGATTCTGGAAAACCTGTGTACCCAGTTCACCGATCTGACGGTGCTCCACTTCCAACTGATGCTTCGGGAGCTGTTATTGGACCAGACGGAGAACCAATCCCAACGGATGCCAGCGGCAAACCACTTGCCAAAGATGGATCTCCATTGCTAACTGATGCTTCCGGCAACTACATCCTTGTTCCGTCCGACGAAGAAACTCCCAAAGCTCTTCCAACGGATTCTGAAGGAAATGTCGTTTATCCAATCACTAATCCAGATGGAACTCCACTTGGAACTGATTCTTCTGGCGCTTACGTATCTCAAGATGGAAGTGTCATCGAGAAAATTGAAGATGGAAAACCAGTTGGACCAGATGGACAGGTAGGATTTTAAAAATTATCACCACTTTGAAAACTTATATTGTTGATTAATATACCGTATTTTCTCTAGTATGTAGAAGCCCATCCTCCGAAGTGCTTAAAAAAAATAGAAGCCC</canonical>
            <polymorphic>TTGTTGGACCAGACGGACAAGTATTGCCAACTGATTCCACTGGAAAGACTGTTCATCCAGTTCGCGGACCAGATGGAACACCGCTTCCAACTGATGCTTCTGGAGCAGTTATTGGACCAGACGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAAGATGGATCCCCATTACCAACTGATAACGAAGGAAATTACGTTCTTGTTCCAACAGAAGACGATTCAGCGAAGGCTCTTCCAACTGATGATTCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACACCACTTGGAACTGATGCTTCAGGAAACTTTGTTACCGATGAAGGGGAGAGCATTGACAAGAATGAGGATGGCAAACCAACTGGACCAGATGGGCAGGTAAACATCATTTCTGAAAACTATTTGTGGAACACATTTAATTTGAATATTTCAGGTCCTGCCAACCGATGCTGACGGAAACTACATCTACCCAGCAGTAGGACYAGATGGACAAGTCCTACCAACAGACGATTCTGGAAAACCTGTGTACCCAGTTCACCGATCTGACGGTGCTCCACTTCCAACTGATGCTTCGGGAGCTGTTATTGGACCAGACGGAGAACCAATCCCAACGGATGCCAGCGGCAAACCACTTGCCAAAGATGGATCTCCATTGCTAACTGATGCTTCCGGCAACTACATCCTTGTTCCGTCCGACGAAGAAACTCCCAAAGCTCTTCCAACGGATTCTGAAGGAAATGTCGTTTATCCAATCACTAATCCAGATGGAACTCCACTTGGAACTGATTCTTCTGGCGCTTACGTATCTCAAGATGGAAGTGTCATCGAGAAAATTGAAGATGGAAAACCAGTTGGACCAGATGGACAGGTAGGATTTTAAAAATTATCACCACTTTGAAAACTTATATTGTTGATTAATATACCGTATTTTCTCTAGTATGTAGAAGCCCATCCTCCGAAGTGCTTAAAAAAAATAGAAGCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>267 267 129 108 69 60 48 46 6</canonical_bands>
                <polymorphic_bands>267 267 154 129 69 60 48 6</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>267 267 129 108 69 60 48 46 6</canonical_bands>
                <polymorphic_bands>267 267 154 129 69 60 48 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGTAAACATCATTTCTGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GTCTGGTCCAATAACAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>219</pcr_amplicon_size>
		<canonical_amplicon>AGGTAAACATCATTTCTGAAAACTATTTGTGGAACACATTTAATTTGAATATTTCAGGTCCTGCCAACCGATGCTGACGGAAACTACATCTACCCAGCAGTAGGACCAGATGGACAAGTCCTACCAACAGACGATTCTGGAAAACCTGTGTACCCAGTTCACCGATCTGACGGTGCTCCACTTCCAACTGATGCTTCGGGAGCTGTTATTGGACCAGAC</canonical_amplicon>
		<polymorphic_amplicon>AGGTAAACATCATTTCTGAAAACTATTTGTGGAACACATTTAATTTGAATATTTCAGGTCCTGCCAACCGATGCTGACGGAAACTACATCTACCCAGCAGTAGGACYAGATGGACAAGTCCTACCAACAGACGATTCTGGAAAACCTGTGTACCCAGTTCACCGATCTGACGGTGCTCCACTTCCAACTGATGCTTCGGGAGCTGTTATTGGACCAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35330</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>233183</contig_pos>
        <strand></strand>
        <context>TCTCCATTGC[T/C]AACTGATGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCCAACGGATGCCAGCGGCAAACCACTTGCCAAAGATGGATCTCCATTGC</left_flank>
        <right_flank>AACTGATGCTTCCGGCAACTACATCCTTGTTCCGTCCGACGAAGAAACTC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCCATTACCAACTGATAACGAAGGAAATTACGTTCTTGTTCCAACAGAAGACGATTCAGCGAAGGCTCTTCCAACTGATGATTCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACACCACTTGGAACTGATGCTTCAGGAAACTTTGTTACCGATGAAGGGGAGAGCATTGACAAGAATGAGGATGGCAAACCAACTGGACCAGATGGGCAGGTAAACATCATTTCTGAAAACTATTTGTGGAACACATTTAATTTGAATATTTCAGGTCCTGCCAACCGATGCTGACGGAAACTACATCTACCCAGCAGTAGGACCAGATGGACAAGTCCTACCAACAGACGATTCTGGAAAACCTGTGTACCCAGTTCACCGATCTGACGGTGCTCCACTTCCAACTGATGCTTCGGGAGCTGTTATTGGACCAGACGGAGAACCAATCCCAACGGATGCCAGCGGCAAACCACTTGCCAAAGATGGATCTCCATTGCTAACTGATGCTTCCGGCAACTACATCCTTGTTCCGTCCGACGAAGAAACTCCCAAAGCTCTTCCAACGGATTCTGAAGGAAATGTCGTTTATCCAATCACTAATCCAGATGGAACTCCACTTGGAACTGATTCTTCTGGCGCTTACGTATCTCAAGATGGAAGTGTCATCGAGAAAATTGAAGATGGAAAACCAGTTGGACCAGATGGACAGGTAGGATTTTAAAAATTATCACCACTTTGAAAACTTATATTGTTGATTAATATACCGTATTTTCTCTAGTATGTAGAAGCCCATCCTCCGAAGTGCTTAAAAAAAATAGAAGCCCACTTTCTAACAGAACTTCGTACAGTGCAGATCGCCTATTCGGTTATTGCAGGCATTTTCTTTCTTTTTAAAAAAATGTTTCTAATGATTTCCGTTTTTGGTAATTTTCTGAGAAGGCGGTTGAAAAAATAGAAGCCTATGGGTTCCGATTAGAGAAAATACAGTAAGTAAATCT</canonical>
            <polymorphic>CCCCATTACCAACTGATAACGAAGGAAATTACGTTCTTGTTCCAACAGAAGACGATTCAGCGAAGGCTCTTCCAACTGATGATTCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACACCACTTGGAACTGATGCTTCAGGAAACTTTGTTACCGATGAAGGGGAGAGCATTGACAAGAATGAGGATGGCAAACCAACTGGACCAGATGGGCAGGTAAACATCATTTCTGAAAACTATTTGTGGAACACATTTAATTTGAATATTTCAGGTCCTGCCAACCGATGCTGACGGAAACTACATCTACCCAGCAGTAGGACCAGATGGACAAGTCCTACCAACAGACGATTCTGGAAAACCTGTGTACCCAGTTCACCGATCTGACGGTGCTCCACTTCCAACTGATGCTTCGGGAGCTGTTATTGGACCAGACGGAGAACCAATCCCAACGGATGCCAGCGGCAAACCACTTGCCAAAGATGGATCTCCATTGCYAACTGATGCTTCCGGCAACTACATCCTTGTTCCGTCCGACGAAGAAACTCCCAAAGCTCTTCCAACGGATTCTGAAGGAAATGTCGTTTATCCAATCACTAATCCAGATGGAACTCCACTTGGAACTGATTCTTCTGGCGCTTACGTATCTCAAGATGGAAGTGTCATCGAGAAAATTGAAGATGGAAAACCAGTTGGACCAGATGGACAGGTAGGATTTTAAAAATTATCACCACTTTGAAAACTTATATTGTTGATTAATATACCGTATTTTCTCTAGTATGTAGAAGCCCATCCTCCGAAGTGCTTAAAAAAAATAGAAGCCCACTTTCTAACAGAACTTCGTACAGTGCAGATCGCCTATTCGGTTATTGCAGGCATTTTCTTTCTTTTTAAAAAAATGTTTCTAATGATTTCCGTTTTTGGTAATTTTCTGAGAAGGCGGTTGAAAAAATAGAAGCCTATGGGTTCCGATTAGAGAAAATACAGTAAGTAAATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCTGTTATTGGACCAGAC</pcr_primer_p1>
		<pcr_primer_p2>ATGACACTTCCATCTTGAGATAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGCTGTTATTGGACCAGACGGAGAACCAATCCCAACGGATGCCAGCGGCAAACCACTTGCCAAAGATGGATCTCCATTGCTAACTGATGCTTCCGGCAACTACATCCTTGTTCCGTCCGACGAAGAAACTCCCAAAGCTCTTCCAACGGATTCTGAAGGAAATGTCGTTTATCCAATCACTAATCCAGATGGAACTCCACTTGGAACTGATTCTTCTGGCGCTTACGTATCTCAAGATGGAAGTGTCAT</canonical_amplicon>
		<polymorphic_amplicon>GAGCTGTTATTGGACCAGACGGAGAACCAATCCCAACGGATGCCAGCGGCAAACCACTTGCCAAAGATGGATCTCCATTGCYAACTGATGCTTCCGGCAACTACATCCTTGTTCCGTCCGACGAAGAAACTCCCAAAGCTCTTCCAACGGATTCTGAAGGAAATGTCGTTTATCCAATCACTAATCCAGATGGAACTCCACTTGGAACTGATTCTTCTGGCGCTTACGTATCTCAAGATGGAAGTGTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35331</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>236390</contig_pos>
        <strand>+</strand>
        <context>AAGTCCTACC[A/T]ACAGAYKSAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACC</left_flank>
        <right_flank>ACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGCTGTTTTCATCAAGTTTGACCATAGATATGCCCTATTACATGTCAAAATTCACTAAAAATAGGGATTTGGCTGTAATAATCGTGAATATTTTCATTTTTAGGGCCTAACTCAAAATTCTGAAAAATCTAAACAAACGAACAATAACAGACAAAGTTATGATTTTTTGAAAATATAGCCATTTTTTGGTACGTTTTGGGCCATAACTCCCAAAAAAAAAATTTTATCAACTATTCCTTTTGGATTCTAAAATAACTTTTTACGTTCTTTCCAACCATCTAGGTCTCAATTTTTTTCAAGGGTAACACTTGGGAGTCATTCCATGTGAAAATTGCCAAAATTTGAATAAAATTGATTTGTTCTCTTCCAGGTCCTTCAAACTGACGAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGA</canonical>
            <polymorphic>TTGGCTGTTTTCATCAAGTTTGACCATAGATATGCCCTATTACATGTCAAAATTCACTAAAAATAGGGATTTGGCTGTAATAATCGTGAATATTTTCATTTTTAGGGCCTAACTCAAAATTCTGAAAAATCTAAACAAACGAACAATAACAGACAAAGTTATGATTTTTTGAAAATATAGCCATTTTTTGGTACGTTTTGGGCCATAACTCCCAAAAAAAAAATTTTATCAACTATTCCTTTTGGATTCTAAAATAACTTTTTACGTTCTTTCCAACCATCTAGGTCTCAATTTTTTTCAAGGGTAACACTTGGGAGTCATTCCATGTGAAAATTGCCAAAATTTGAATAAAATTGATTTGTTCTCTTCCAGGTCCTTCAAACTGACGAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCWACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATGCTACAGGAAAGACAGTAT</pcr_primer_p1>
		<pcr_primer_p2>CAGTTGGAACAAGAACATAATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTG</canonical_amplicon>
		<polymorphic_amplicon>TGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCWACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35332</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>236396</contig_pos>
        <strand>+</strand>
        <context>TACCWACAGA[C/T]KSAACTGGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGA</left_flank>
        <right_flank>GGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTCATCAAGTTTGACCATAGATATGCCCTATTACATGTCAAAATTCACTAAAAATAGGGATTTGGCTGTAATAATCGTGAATATTTTCATTTTTAGGGCCTAACTCAAAATTCTGAAAAATCTAAACAAACGAACAATAACAGACAAAGTTATGATTTTTTGAAAATATAGCCATTTTTTGGTACGTTTTGGGCCATAACTCCCAAAAAAAAAATTTTATCAACTATTCCTTTTGGATTCTAAAATAACTTTTTACGTTCTTTCCAACCATCTAGGTCTCAATTTTTTTCAAGGGTAACACTTGGGAGTCATTCCATGTGAAAATTGCCAAAATTTGAATAAAATTGATTTGTTCTCTTCCAGGTCCTTCAAACTGACGAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATC</canonical>
            <polymorphic>GTTTTCATCAAGTTTGACCATAGATATGCCCTATTACATGTCAAAATTCACTAAAAATAGGGATTTGGCTGTAATAATCGTGAATATTTTCATTTTTAGGGCCTAACTCAAAATTCTGAAAAATCTAAACAAACGAACAATAACAGACAAAGTTATGATTTTTTGAAAATATAGCCATTTTTTGGTACGTTTTGGGCCATAACTCCCAAAAAAAAAATTTTATCAACTATTCCTTTTGGATTCTAAAATAACTTTTTACGTTCTTTCCAACCATCTAGGTCTCAATTTTTTTCAAGGGTAACACTTGGGAGTCATTCCATGTGAAAATTGCCAAAATTTGAATAAAATTGATTTGTTCTCTTCCAGGTCCTTCAAACTGACGAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGAYGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATGCTACAGGAAAGACAGTAT</pcr_primer_p1>
		<pcr_primer_p2>CAGTTGGAACAAGAACATAATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTG</canonical_amplicon>
		<polymorphic_amplicon>TGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGAYGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35333</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>236397</contig_pos>
        <strand>+</strand>
        <context>ACCWACAGAY[G/T]SAACTGGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGAC</left_flank>
        <right_flank>GAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCATCAAGTTTGACCATAGATATGCCCTATTACATGTCAAAATTCACTAAAAATAGGGATTTGGCTGTAATAATCGTGAATATTTTCATTTTTAGGGCCTAACTCAAAATTCTGAAAAATCTAAACAAACGAACAATAACAGACAAAGTTATGATTTTTTGAAAATATAGCCATTTTTTGGTACGTTTTGGGCCATAACTCCCAAAAAAAAAATTTTATCAACTATTCCTTTTGGATTCTAAAATAACTTTTTACGTTCTTTCCAACCATCTAGGTCTCAATTTTTTTCAAGGGTAACACTTGGGAGTCATTCCATGTGAAAATTGCCAAAATTTGAATAAAATTGATTTGTTCTCTTCCAGGTCCTTCAAACTGACGAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCT</canonical>
            <polymorphic>TTTTCATCAAGTTTGACCATAGATATGCCCTATTACATGTCAAAATTCACTAAAAATAGGGATTTGGCTGTAATAATCGTGAATATTTTCATTTTTAGGGCCTAACTCAAAATTCTGAAAAATCTAAACAAACGAACAATAACAGACAAAGTTATGATTTTTTGAAAATATAGCCATTTTTTGGTACGTTTTGGGCCATAACTCCCAAAAAAAAAATTTTATCAACTATTCCTTTTGGATTCTAAAATAACTTTTTACGTTCTTTCCAACCATCTAGGTCTCAATTTTTTTCAAGGGTAACACTTGGGAGTCATTCCATGTGAAAATTGCCAAAATTTGAATAAAATTGATTTGTTCTCTTCCAGGTCCTTCAAACTGACGAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACKGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>375 228 180 60 59 38 30 30</canonical_bands>
                <polymorphic_bands>375 228 180 60 60 59 38</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATGCTACAGGAAAGACAGTAT</pcr_primer_p1>
		<pcr_primer_p2>CAGTTGGAACAAGAACATAATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTG</canonical_amplicon>
		<polymorphic_amplicon>TGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACKGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35334</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>236398</contig_pos>
        <strand>+</strand>
        <context>CCWACAGAYK[C/G]AACTGGAAAR</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACG</left_flank>
        <right_flank>AACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCATCAAGTTTGACCATAGATATGCCCTATTACATGTCAAAATTCACTAAAAATAGGGATTTGGCTGTAATAATCGTGAATATTTTCATTTTTAGGGCCTAACTCAAAATTCTGAAAAATCTAAACAAACGAACAATAACAGACAAAGTTATGATTTTTTGAAAATATAGCCATTTTTTGGTACGTTTTGGGCCATAACTCCCAAAAAAAAAATTTTATCAACTATTCCTTTTGGATTCTAAAATAACTTTTTACGTTCTTTCCAACCATCTAGGTCTCAATTTTTTTCAAGGGTAACACTTGGGAGTCATTCCATGTGAAAATTGCCAAAATTTGAATAAAATTGATTTGTTCTCTTCCAGGTCCTTCAAACTGACGAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTG</canonical>
            <polymorphic>TTTCATCAAGTTTGACCATAGATATGCCCTATTACATGTCAAAATTCACTAAAAATAGGGATTTGGCTGTAATAATCGTGAATATTTTCATTTTTAGGGCCTAACTCAAAATTCTGAAAAATCTAAACAAACGAACAATAACAGACAAAGTTATGATTTTTTGAAAATATAGCCATTTTTTGGTACGTTTTGGGCCATAACTCCCAAAAAAAAAATTTTATCAACTATTCCTTTTGGATTCTAAAATAACTTTTTACGTTCTTTCCAACCATCTAGGTCTCAATTTTTTTCAAGGGTAACACTTGGGAGTCATTCCATGTGAAAATTGCCAAAATTTGAATAAAATTGATTTGTTCTCTTCCAGGTCCTTCAAACTGACGAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGSAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>375 228 179 60 59 39 30 30</canonical_bands>
                <polymorphic_bands>375 228 179 60 60 59 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATGCTACAGGAAAGACAGTAT</pcr_primer_p1>
		<pcr_primer_p2>CAGTTGGAACAAGAACATAATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTG</canonical_amplicon>
		<polymorphic_amplicon>TGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGSAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35335</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>236408</contig_pos>
        <strand>+</strand>
        <context>SAACTGGAAA[A/G]MMKGTKTATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAA</left_flank>
        <right_flank>CATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGACCATAGATATGCCCTATTACATGTCAAAATTCACTAAAAATAGGGATTTGGCTGTAATAATCGTGAATATTTTCATTTTTAGGGCCTAACTCAAAATTCTGAAAAATCTAAACAAACGAACAATAACAGACAAAGTTATGATTTTTTGAAAATATAGCCATTTTTTGGTACGTTTTGGGCCATAACTCCCAAAAAAAAAATTTTATCAACTATTCCTTTTGGATTCTAAAATAACTTTTTACGTTCTTTCCAACCATCTAGGTCTCAATTTTTTTCAAGGGTAACACTTGGGAGTCATTCCATGTGAAAATTGCCAAAATTTGAATAAAATTGATTTGTTCTCTTCCAGGTCCTTCAAACTGACGAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCAT</canonical>
            <polymorphic>TTTGACCATAGATATGCCCTATTACATGTCAAAATTCACTAAAAATAGGGATTTGGCTGTAATAATCGTGAATATTTTCATTTTTAGGGCCTAACTCAAAATTCTGAAAAATCTAAACAAACGAACAATAACAGACAAAGTTATGATTTTTTGAAAATATAGCCATTTTTTGGTACGTTTTGGGCCATAACTCCCAAAAAAAAAATTTTATCAACTATTCCTTTTGGATTCTAAAATAACTTTTTACGTTCTTTCCAACCATCTAGGTCTCAATTTTTTTCAAGGGTAACACTTGGGAGTCATTCCATGTGAAAATTGCCAAAATTTGAATAAAATTGATTTGTTCTCTTCCAGGTCCTTCAAACTGACGAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAARCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>496 476 28</canonical_bands>
                <polymorphic_bands>972 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATGCTACAGGAAAGACAGTAT</pcr_primer_p1>
		<pcr_primer_p2>CAGTTGGAACAAGAACATAATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTG</canonical_amplicon>
		<polymorphic_amplicon>TGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAARCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35336</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>236409</contig_pos>
        <strand>+</strand>
        <context>AACTGGAAAR[A/C]MKGTKTATCC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAG</left_flank>
        <right_flank>ATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGACCATAGATATGCCCTATTACATGTCAAAATTCACTAAAAATAGGGATTTGGCTGTAATAATCGTGAATATTTTCATTTTTAGGGCCTAACTCAAAATTCTGAAAAATCTAAACAAACGAACAATAACAGACAAAGTTATGATTTTTTGAAAATATAGCCATTTTTTGGTACGTTTTGGGCCATAACTCCCAAAAAAAAAATTTTATCAACTATTCCTTTTGGATTCTAAAATAACTTTTTACGTTCTTTCCAACCATCTAGGTCTCAATTTTTTTCAAGGGTAACACTTGGGAGTCATTCCATGTGAAAATTGCCAAAATTTGAATAAAATTGATTTGTTCTCTTCCAGGTCCTTCAAACTGACGAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATT</canonical>
            <polymorphic>TTGACCATAGATATGCCCTATTACATGTCAAAATTCACTAAAAATAGGGATTTGGCTGTAATAATCGTGAATATTTTCATTTTTAGGGCCTAACTCAAAATTCTGAAAAATCTAAACAAACGAACAATAACAGACAAAGTTATGATTTTTTGAAAATATAGCCATTTTTTGGTACGTTTTGGGCCATAACTCCCAAAAAAAAAATTTTATCAACTATTCCTTTTGGATTCTAAAATAACTTTTTACGTTCTTTCCAACCATCTAGGTCTCAATTTTTTTCAAGGGTAACACTTGGGAGTCATTCCATGTGAAAATTGCCAAAATTTGAATAAAATTGATTTGTTCTCTTCCAGGTCCTTCAAACTGACGAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGMATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>497 476 27</canonical_bands>
                <polymorphic_bands>973 27</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>450 281 195 50 24</canonical_bands>
                <polymorphic_bands>645 281 50 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATGCTACAGGAAAGACAGTAT</pcr_primer_p1>
		<pcr_primer_p2>CAGTTGGAACAAGAACATAATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTG</canonical_amplicon>
		<polymorphic_amplicon>TGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGMATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35337</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>236410</contig_pos>
        <strand>+</strand>
        <context>ACTGGAAARM[A/C]KGTKTATCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGC</left_flank>
        <right_flank>TGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACCATAGATATGCCCTATTACATGTCAAAATTCACTAAAAATAGGGATTTGGCTGTAATAATCGTGAATATTTTCATTTTTAGGGCCTAACTCAAAATTCTGAAAAATCTAAACAAACGAACAATAACAGACAAAGTTATGATTTTTTGAAAATATAGCCATTTTTTGGTACGTTTTGGGCCATAACTCCCAAAAAAAAAATTTTATCAACTATTCCTTTTGGATTCTAAAATAACTTTTTACGTTCTTTCCAACCATCTAGGTCTCAATTTTTTTCAAGGGTAACACTTGGGAGTCATTCCATGTGAAAATTGCCAAAATTTGAATAAAATTGATTTGTTCTCTTCCAGGTCCTTCAAACTGACGAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTG</canonical>
            <polymorphic>TGACCATAGATATGCCCTATTACATGTCAAAATTCACTAAAAATAGGGATTTGGCTGTAATAATCGTGAATATTTTCATTTTTAGGGCCTAACTCAAAATTCTGAAAAATCTAAACAAACGAACAATAACAGACAAAGTTATGATTTTTTGAAAATATAGCCATTTTTTGGTACGTTTTGGGCCATAACTCCCAAAAAAAAAATTTTATCAACTATTCCTTTTGGATTCTAAAATAACTTTTTACGTTCTTTCCAACCATCTAGGTCTCAATTTTTTTCAAGGGTAACACTTGGGAGTCATTCCATGTGAAAATTGCCAAAATTTGAATAAAATTGATTTGTTCTCTTCCAGGTCCTTCAAACTGACGAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCMTGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>498 476 26</canonical_bands>
                <polymorphic_bands>974 26</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>450 281 195 51 23</canonical_bands>
                <polymorphic_bands>645 281 51 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATGCTACAGGAAAGACAGTAT</pcr_primer_p1>
		<pcr_primer_p2>CAGTTGGAACAAGAACATAATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTG</canonical_amplicon>
		<polymorphic_amplicon>TGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCMTGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35338</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>236411</contig_pos>
        <strand>+</strand>
        <context>CTGGAAARMM[G/T]GTKTATCCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCA</left_flank>
        <right_flank>GTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACCATAGATATGCCCTATTACATGTCAAAATTCACTAAAAATAGGGATTTGGCTGTAATAATCGTGAATATTTTCATTTTTAGGGCCTAACTCAAAATTCTGAAAAATCTAAACAAACGAACAATAACAGACAAAGTTATGATTTTTTGAAAATATAGCCATTTTTTGGTACGTTTTGGGCCATAACTCCCAAAAAAAAAATTTTATCAACTATTCCTTTTGGATTCTAAAATAACTTTTTACGTTCTTTCCAACCATCTAGGTCTCAATTTTTTTCAAGGGTAACACTTGGGAGTCATTCCATGTGAAAATTGCCAAAATTTGAATAAAATTGATTTGTTCTCTTCCAGGTCCTTCAAACTGACGAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGG</canonical>
            <polymorphic>GACCATAGATATGCCCTATTACATGTCAAAATTCACTAAAAATAGGGATTTGGCTGTAATAATCGTGAATATTTTCATTTTTAGGGCCTAACTCAAAATTCTGAAAAATCTAAACAAACGAACAATAACAGACAAAGTTATGATTTTTTGAAAATATAGCCATTTTTTGGTACGTTTTGGGCCATAACTCCCAAAAAAAAAATTTTATCAACTATTCCTTTTGGATTCTAAAATAACTTTTTACGTTCTTTCCAACCATCTAGGTCTCAATTTTTTTCAAGGGTAACACTTGGGAGTCATTCCATGTGAAAATTGCCAAAATTTGAATAAAATTGATTTGTTCTCTTCCAGGTCCTTCAAACTGACGAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCAKGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>499 476 25</canonical_bands>
                <polymorphic_bands>975 25</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>450 281 195 52 22</canonical_bands>
                <polymorphic_bands>645 281 52 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATGCTACAGGAAAGACAGTAT</pcr_primer_p1>
		<pcr_primer_p2>CAGTTGGAACAAGAACATAATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTG</canonical_amplicon>
		<polymorphic_amplicon>TGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCAKGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35339</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>236414</contig_pos>
        <strand>+</strand>
        <context>GAAARMMKGT[G/T]TATCCAGTYC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGT</left_flank>
        <right_flank>TATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATAGATATGCCCTATTACATGTCAAAATTCACTAAAAATAGGGATTTGGCTGTAATAATCGTGAATATTTTCATTTTTAGGGCCTAACTCAAAATTCTGAAAAATCTAAACAAACGAACAATAACAGACAAAGTTATGATTTTTTGAAAATATAGCCATTTTTTGGTACGTTTTGGGCCATAACTCCCAAAAAAAAAATTTTATCAACTATTCCTTTTGGATTCTAAAATAACTTTTTACGTTCTTTCCAACCATCTAGGTCTCAATTTTTTTCAAGGGTAACACTTGGGAGTCATTCCATGTGAAAATTGCCAAAATTTGAATAAAATTGATTTGTTCTCTTCCAGGTCCTTCAAACTGACGAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACC</canonical>
            <polymorphic>CATAGATATGCCCTATTACATGTCAAAATTCACTAAAAATAGGGATTTGGCTGTAATAATCGTGAATATTTTCATTTTTAGGGCCTAACTCAAAATTCTGAAAAATCTAAACAAACGAACAATAACAGACAAAGTTATGATTTTTTGAAAATATAGCCATTTTTTGGTACGTTTTGGGCCATAACTCCCAAAAAAAAAATTTTATCAACTATTCCTTTTGGATTCTAAAATAACTTTTTACGTTCTTTCCAACCATCTAGGTCTCAATTTTTTTCAAGGGTAACACTTGGGAGTCATTCCATGTGAAAATTGCCAAAATTTGAATAAAATTGATTTGTTCTCTTCCAGGTCCTTCAAACTGACGAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTKTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>221 195 124 122 91 67 35 32 32 20 20 17 13 8 3</canonical_bands>
                <polymorphic_bands>221 208 124 122 91 67 35 32 32 20 20 17 8 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATGCTACAGGAAAGACAGTAT</pcr_primer_p1>
		<pcr_primer_p2>CAGTTGGAACAAGAACATAATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTG</canonical_amplicon>
		<polymorphic_amplicon>TGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTKTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35340</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>236423</contig_pos>
        <strand>+</strand>
        <context>TKTATCCAGT[C/T]CGTGRTCCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGT</left_flank>
        <right_flank>CGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCCTATTACATGTCAAAATTCACTAAAAATAGGGATTTGGCTGTAATAATCGTGAATATTTTCATTTTTAGGGCCTAACTCAAAATTCTGAAAAATCTAAACAAACGAACAATAACAGACAAAGTTATGATTTTTTGAAAATATAGCCATTTTTTGGTACGTTTTGGGCCATAACTCCCAAAAAAAAAATTTTATCAACTATTCCTTTTGGATTCTAAAATAACTTTTTACGTTCTTTCCAACCATCTAGGTCTCAATTTTTTTCAAGGGTAACACTTGGGAGTCATTCCATGTGAAAATTGCCAAAATTTGAATAAAATTGATTTGTTCTCTTCCAGGTCCTTCAAACTGACGAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGA</canonical>
            <polymorphic>GCCCTATTACATGTCAAAATTCACTAAAAATAGGGATTTGGCTGTAATAATCGTGAATATTTTCATTTTTAGGGCCTAACTCAAAATTCTGAAAAATCTAAACAAACGAACAATAACAGACAAAGTTATGATTTTTTGAAAATATAGCCATTTTTTGGTACGTTTTGGGCCATAACTCCCAAAAAAAAAATTTTATCAACTATTCCTTTTGGATTCTAAAATAACTTTTTACGTTCTTTCCAACCATCTAGGTCTCAATTTTTTTCAAGGGTAACACTTGGGAGTCATTCCATGTGAAAATTGCCAAAATTTGAATAAAATTGATTTGTTCTCTTCCAGGTCCTTCAAACTGACGAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTYCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATGCTACAGGAAAGACAGTAT</pcr_primer_p1>
		<pcr_primer_p2>CAGTTGGAACAAGAACATAATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTG</canonical_amplicon>
		<polymorphic_amplicon>TGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTYCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35341</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>236428</contig_pos>
        <strand>+</strand>
        <context>CCAGTYCGTG[A/G]TCCAGATGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTG</left_flank>
        <right_flank>TCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTACATGTCAAAATTCACTAAAAATAGGGATTTGGCTGTAATAATCGTGAATATTTTCATTTTTAGGGCCTAACTCAAAATTCTGAAAAATCTAAACAAACGAACAATAACAGACAAAGTTATGATTTTTTGAAAATATAGCCATTTTTTGGTACGTTTTGGGCCATAACTCCCAAAAAAAAAATTTTATCAACTATTCCTTTTGGATTCTAAAATAACTTTTTACGTTCTTTCCAACCATCTAGGTCTCAATTTTTTTCAAGGGTAACACTTGGGAGTCATTCCATGTGAAAATTGCCAAAATTTGAATAAAATTGATTTGTTCTCTTCCAGGTCCTTCAAACTGACGAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAA</canonical>
            <polymorphic>ATTACATGTCAAAATTCACTAAAAATAGGGATTTGGCTGTAATAATCGTGAATATTTTCATTTTTAGGGCCTAACTCAAAATTCTGAAAAATCTAAACAAACGAACAATAACAGACAAAGTTATGATTTTTTGAAAATATAGCCATTTTTTGGTACGTTTTGGGCCATAACTCCCAAAAAAAAAATTTTATCAACTATTCCTTTTGGATTCTAAAATAACTTTTTACGTTCTTTCCAACCATCTAGGTCTCAATTTTTTTCAAGGGTAACACTTGGGAGTCATTCCATGTGAAAATTGCCAAAATTTGAATAAAATTGATTTGTTCTCTTCCAGGTCCTTCAAACTGACGAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGRTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNTGG</site>
                <isoschizomers>
                    <enzyme>AccB7I</enzyme>
                    <enzyme>PflBI</enzyme>
                    <enzyme>PflMI</enzyme>
                    <enzyme>Van91I</enzyme>
                </isoschizomers>
                <canonical_bands>435 228 149 119 69</canonical_bands>
                <polymorphic_bands>554 228 149 69</polymorphic_bands>
            </assay>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>334 327 108 60 59 48 46 18</canonical_bands>
                <polymorphic_bands>334 327 108 108 59 46 18</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>267 172 108 95 67 60 60 59 48 46 18</canonical_bands>
                <polymorphic_bands>267 172 108 108 95 67 60 59 46 18</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>375 228 149 69 60 59 30 30</canonical_bands>
                <polymorphic_bands>405 228 149 69 60 59 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATGCTACAGGAAAGACAGTAT</pcr_primer_p1>
		<pcr_primer_p2>CAGTTGGAACAAGAACATAATTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTG</canonical_amplicon>
		<polymorphic_amplicon>TGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGRTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35342</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>236744</contig_pos>
        <strand>+</strand>
        <context>AACCAGTAGG[C/T]CCWGATGGTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGG</left_flank>
        <right_flank>CCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATTTGTTCTCTTCCAGGTCCTTCAAACTGACGAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGA</canonical>
            <polymorphic>TGATTTGTTCTCTTCCAGGTCCTTCAAACTGACGAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGYCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>499 436 65</canonical_bands>
                <polymorphic_bands>935 65</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>382 278 105 65 59 58 53</canonical_bands>
                <polymorphic_bands>435 278 105 65 59 58</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCCAACTGGAGAAGATGTTA</pcr_primer_p1>
		<pcr_primer_p2>CAATACTTGTCCGTCTGGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTG</canonical_amplicon>
		<polymorphic_amplicon>GTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGYCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35343</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>236747</contig_pos>
        <strand>+</strand>
        <context>CAGTAGGYCC[A/T]GATGGTGCKG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCC</left_flank>
        <right_flank>GATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGTTCTCTTCCAGGTCCTTCAAACTGACGAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGG</canonical>
            <polymorphic>TTTGTTCTCTTCCAGGTCCTTCAAACTGACGAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCWGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>505 480 15</canonical_bands>
                <polymorphic_bands>985 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCCAACTGGAGAAGATGTTA</pcr_primer_p1>
		<pcr_primer_p2>CAATACTTGTCCGTCTGGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTG</canonical_amplicon>
		<polymorphic_amplicon>GTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCWGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35344</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>236756</contig_pos>
        <strand>+</strand>
        <context>CWGATGGTGC[G/T]GTTCTYCCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGC</left_flank>
        <right_flank>GTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCAGGTCCTTCAAACTGACGAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGGACAAGTTCT</canonical>
            <polymorphic>TTCCAGGTCCTTCAAACTGACGAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCKGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGGACAAGTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCCAACTGGAGAAGATGTTA</pcr_primer_p1>
		<pcr_primer_p2>CAATACTTGTCCGTCTGGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTG</canonical_amplicon>
		<polymorphic_amplicon>GTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCKGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35345</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>236762</contig_pos>
        <strand>+</strand>
        <context>GTGCKGTTCT[C/T]CCAACYGATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCT</left_flank>
        <right_flank>CCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCTTCAAACTGACGAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGGACAAGTTCTCCCAAC</canonical>
            <polymorphic>GTCCTTCAAACTGACGAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTYCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGGACAAGTTCTCCCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCCAACTGGAGAAGATGTTA</pcr_primer_p1>
		<pcr_primer_p2>CAATACTTGTCCGTCTGGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTG</canonical_amplicon>
		<polymorphic_amplicon>GTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTYCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35346</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>236768</contig_pos>
        <strand>+</strand>
        <context>TTCTYCCAAC[C/T]GATGCTGAMG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAAC</left_flank>
        <right_flank>GATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAACTGACGAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGGACAAGTTCTCCCAACTGATGC</canonical>
            <polymorphic>CAAACTGACGAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACYGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGGACAAGTTCTCCCAACTGATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCCAACTGGAGAAGATGTTA</pcr_primer_p1>
		<pcr_primer_p2>CAATACTTGTCCGTCTGGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTG</canonical_amplicon>
		<polymorphic_amplicon>GTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACYGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35347</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>236777</contig_pos>
        <strand>+</strand>
        <context>CYGATGCTGA[A/C]GGAAAYTAYA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGA</left_flank>
        <right_flank>GGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGGACAAGTTCTCCCAACTGATGCTGGTCTTCC</canonical>
            <polymorphic>GAATCCGGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGAMGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGGACAAGTTCTCCCAACTGATGCTGGTCTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACCGTTGTTGAAAAGGAC</pcr_primer_p1>
		<pcr_primer_p2>CAGATGCATCAGTTGGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>GTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTG</canonical_amplicon>
		<polymorphic_amplicon>GTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGAMGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35348</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>236783</contig_pos>
        <strand>+</strand>
        <context>CTGAMGGAAA[C/T]TAYATCTATC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAA</left_flank>
        <right_flank>TATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGGACAAGTTCTCCCAACTGATGCTGGTCTTCCTGTGAT</canonical>
            <polymorphic>GGAAATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAAYTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGGACAAGTTCTCCCAACTGATGCTGGTCTTCCTGTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>357 219 205 146 70 3</canonical_bands>
                <polymorphic_bands>365 357 205 70 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTACCGTTGTTGAAAAGGAC</pcr_primer_p1>
		<pcr_primer_p2>CAGATGCATCAGTTGGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>GTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTG</canonical_amplicon>
		<polymorphic_amplicon>GTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAAYTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35349</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>236786</contig_pos>
        <strand>+</strand>
        <context>AMGGAAAYTA[C/T]ATCTATCCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTA</left_flank>
        <right_flank>ATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGGACAAGTTCTCCCAACTGATGCTGGTCTTCCTGTGATTGT</canonical>
            <polymorphic>AATTACATTTACCCAGCTGTTGGACCAGACGGAAAGTACTTCCAACTGATGCTACAGGAAAGACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTAYATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGGACAAGTTCTCCCAACTGATGCTGGTCTTCCTGTGATTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACCGTTGTTGAAAAGGAC</pcr_primer_p1>
		<pcr_primer_p2>CAGATGCATCAGTTGGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>GTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTG</canonical_amplicon>
		<polymorphic_amplicon>GTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTAYATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35350</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>236847</contig_pos>
        <strand>+</strand>
        <context>TGGAAAAACT[A/G]TCTATCCAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACT</left_flank>
        <right_flank>TCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGGACAAGTTCTCCCAACTGATGCTGGTCTTCCTGTGATTGTTGATCAAAGTGGAAAACCGCTTCTAACAGATGCAACTGGAAACTATTTGGATAATAACGGA</canonical>
            <polymorphic>GACAGTATACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTRTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGGACAAGTTCTCCCAACTGATGCTGGTCTTCCTGTGATTGTTGATCAAAGTGGAAAACCGCTTCTAACAGATGCAACTGGAAACTATTTGGATAATAACGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>476 357 138 25 4</canonical_bands>
                <polymorphic_bands>476 357 163 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTACCGTTGTTGAAAAGGAC</pcr_primer_p1>
		<pcr_primer_p2>CAGATGCATCAGTTGGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>GTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTG</canonical_amplicon>
		<polymorphic_amplicon>GTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTRTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35351</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>236858</contig_pos>
        <strand>+</strand>
        <context>TCTATCCAGT[C/T]CRYGGAYCWG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGT</left_flank>
        <right_flank>CATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGGACAAGTTCTCCCAACTGATGCTGGTCTTCCTGTGATTGTTGATCAAAGTGGAAAACCGCTTCTAACAGATGCAACTGGAAACTATTTGGATAATAACGGAAATCCGATCGT</canonical>
            <polymorphic>CAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTYCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGGACAAGTTCTCCCAACTGATGCTGGTCTTCCTGTGATTGTTGATCAAAGTGGAAAACCGCTTCTAACAGATGCAACTGGAAACTATTTGGATAATAACGGAAATCCGATCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACCGTTGTTGAAAAGGAC</pcr_primer_p1>
		<pcr_primer_p2>CAGATGCATCAGTTGGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>GTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTG</canonical_amplicon>
		<polymorphic_amplicon>GTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTYCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35352</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>236860</contig_pos>
        <strand>+</strand>
        <context>TATCCAGTYC[A/G]YGGAYCWGAY</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTC</left_flank>
        <right_flank>TGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGGACAAGTTCTCCCAACTGATGCTGGTCTTCCTGTGATTGTTGATCAAAGTGGAAAACCGCTTCTAACAGATGCAACTGGAAACTATTTGGATAATAACGGAAATCCGATCGTTA</canonical>
            <polymorphic>GCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCRTGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGGACAAGTTCTCCCAACTGATGCTGGTCTTCCTGTGATTGTTGATCAAAGTGGAAAACCGCTTCTAACAGATGCAACTGGAAACTATTTGGATAATAACGGAAATCCGATCGTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 450 49</canonical_bands>
                <polymorphic_bands>951 49</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTACCGTTGTTGAAAAGGAC</pcr_primer_p1>
		<pcr_primer_p2>CAGATGCATCAGTTGGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>GTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTG</canonical_amplicon>
		<polymorphic_amplicon>GTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCRTGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35353</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>236861</contig_pos>
        <strand>+</strand>
        <context>ATCCAGTYCR[C/T]GGAYCWGAYG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCA</left_flank>
        <right_flank>GGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGGACAAGTTCTCCCAACTGATGCTGGTCTTCCTGTGATTGTTGATCAAAGTGGAAAACCGCTTCTAACAGATGCAACTGGAAACTATTTGGATAATAACGGAAATCCGATCGTTAT</canonical>
            <polymorphic>CTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCAYGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGGACAAGTTCTCCCAACTGATGCTGGTCTTCCTGTGATTGTTGATCAAAGTGGAAAACCGCTTCTAACAGATGCAACTGGAAACTATTTGGATAATAACGGAAATCCGATCGTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNTGG</site>
                <isoschizomers>
                    <enzyme>AccB7I</enzyme>
                    <enzyme>PflBI</enzyme>
                    <enzyme>PflMI</enzyme>
                    <enzyme>Van91I</enzyme>
                </isoschizomers>
                <canonical_bands>435 375 127 63</canonical_bands>
                <polymorphic_bands>810 127 63</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 450 48</canonical_bands>
                <polymorphic_bands>952 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTACCGTTGTTGAAAAGGAC</pcr_primer_p1>
		<pcr_primer_p2>CAGATGCATCAGTTGGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>GTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTG</canonical_amplicon>
		<polymorphic_amplicon>GTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCAYGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35354</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>236865</contig_pos>
        <strand>+</strand>
        <context>AGTYCRYGGA[C/T]CWGAYGGWAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGA</left_flank>
        <right_flank>CTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGGACAAGTTCTCCCAACTGATGCTGGTCTTCCTGTGATTGTTGATCAAAGTGGAAAACCGCTTCTAACAGATGCAACTGGAAACTATTTGGATAATAACGGAAATCCGATCGTTATTGAA</canonical>
            <polymorphic>AGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGAYCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGGACAAGTTCTCCCAACTGATGCTGGTCTTCCTGTGATTGTTGATCAAAGTGGAAAACCGCTTCTAACAGATGCAACTGGAAACTATTTGGATAATAACGGAAATCCGATCGTTATTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>330 170 167 105 100 65 50 13</canonical_bands>
                <polymorphic_bands>435 170 167 100 65 50 13</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>398 330 167 105</canonical_bands>
                <polymorphic_bands>435 398 167</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>375 302 200 110 13</canonical_bands>
                <polymorphic_bands>575 302 110 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTACCGTTGTTGAAAAGGAC</pcr_primer_p1>
		<pcr_primer_p2>CAGATGCATCAGTTGGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>GTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTG</canonical_amplicon>
		<polymorphic_amplicon>GTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGAYCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35355</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>236867</contig_pos>
        <strand>+</strand>
        <context>TYCRYGGAYC[A/T]GAYGGWACWC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATC</left_flank>
        <right_flank>GACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGGACAAGTTCTCCCAACTGATGCTGGTCTTCCTGTGATTGTTGATCAAAGTGGAAAACCGCTTCTAACAGATGCAACTGGAAACTATTTGGATAATAACGGAAATCCGATCGTTATTGAAAG</canonical>
            <polymorphic>GACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCWGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGGACAAGTTCTCCCAACTGATGCTGGTCTTCCTGTGATTGTTGATCAAAGTGGAAAACCGCTTCTAACAGATGCAACTGGAAACTATTTGGATAATAACGGAAATCCGATCGTTATTGAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>400 330 165 105</canonical_bands>
                <polymorphic_bands>435 400 165</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTACCGTTGTTGAAAAGGAC</pcr_primer_p1>
		<pcr_primer_p2>CAGATGCATCAGTTGGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>GTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTG</canonical_amplicon>
		<polymorphic_amplicon>GTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCWGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35356</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>236870</contig_pos>
        <strand>+</strand>
        <context>RYGGAYCWGA[C/T]GGWACWCCAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGA</left_flank>
        <right_flank>GGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGGACAAGTTCTCCCAACTGATGCTGGTCTTCCTGTGATTGTTGATCAAAGTGGAAAACCGCTTCTAACAGATGCAACTGGAAACTATTTGGATAATAACGGAAATCCGATCGTTATTGAAAGTAA</canonical>
            <polymorphic>CAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGAYGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGGACAAGTTCTCCCAACTGATGCTGGTCTTCCTGTGATTGTTGATCAAAGTGGAAAACCGCTTCTAACAGATGCAACTGGAAACTATTTGGATAATAACGGAAATCCGATCGTTATTGAAAGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>499 338 138 25</canonical_bands>
                <polymorphic_bands>524 338 138</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTACCGTTGTTGAAAAGGAC</pcr_primer_p1>
		<pcr_primer_p2>CAGATGCATCAGTTGGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>GTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTG</canonical_amplicon>
		<polymorphic_amplicon>GTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGAYGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35357</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>236873</contig_pos>
        <strand>+</strand>
        <context>GAYCWGAYGG[A/T]ACWCCACTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGG</left_flank>
        <right_flank>ACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGGACAAGTTCTCCCAACTGATGCTGGTCTTCCTGTGATTGTTGATCAAAGTGGAAAACCGCTTCTAACAGATGCAACTGGAAACTATTTGGATAATAACGGAAATCCGATCGTTATTGAAAGTAATGA</canonical>
            <polymorphic>ATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGWACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGGACAAGTTCTCCCAACTGATGCTGGTCTTCCTGTGATTGTTGATCAAAGTGGAAAACCGCTTCTAACAGATGCAACTGGAAACTATTTGGATAATAACGGAAATCCGATCGTTATTGAAAGTAATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>320 267 180 168 65</canonical_bands>
                <polymorphic_bands>488 267 180 65</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>502 335 138 25</canonical_bands>
                <polymorphic_bands>527 335 138</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTACCGTTGTTGAAAAGGAC</pcr_primer_p1>
		<pcr_primer_p2>CAGATGCATCAGTTGGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>GTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTG</canonical_amplicon>
		<polymorphic_amplicon>GTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGWACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35358</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>236876</contig_pos>
        <strand>+</strand>
        <context>CWGAYGGWAC[A/T]CCACTTCCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTAC</left_flank>
        <right_flank>CCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGGACAAGTTCTCCCAACTGATGCTGGTCTTCCTGTGATTGTTGATCAAAGTGGAAAACCGCTTCTAACAGATGCAACTGGAAACTATTTGGATAATAACGGAAATCCGATCGTTATTGAAAGTAATGAACC</canonical>
            <polymorphic>GACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACWCCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGGACAAGTTCTCCCAACTGATGCTGGTCTTCCTGTGATTGTTGATCAAAGTGGAAAACCGCTTCTAACAGATGCAACTGGAAACTATTTGGATAATAACGGAAATCCGATCGTTATTGAAAGTAATGAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>124 122 113 91 79 67 67 52 48 48 38 22 21 20 20 17 16 13 8 8 3 3</canonical_bands>
                <polymorphic_bands>125 124 113 91 79 67 67 52 48 48 38 22 21 20 20 17 16 13 8 8 3</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTACCGTTGTTGAAAAGGAC</pcr_primer_p1>
		<pcr_primer_p2>CAGATGCATCAGTTGGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>GTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTG</canonical_amplicon>
		<polymorphic_amplicon>GTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACWCCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35359</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>236888</contig_pos>
        <strand>+</strand>
        <context>CACTTCCAAC[C/T]GATGCATCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAAC</left_flank>
        <right_flank>GATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGGACAAGTTCTCCCAACTGATGCTGGTCTTCCTGTGATTGTTGATCAAAGTGGAAAACCGCTTCTAACAGATGCAACTGGAAACTATTTGGATAATAACGGAAATCCGATCGTTATTGAAAGTAATGAACCAACTGGACCAGA</canonical>
            <polymorphic>CAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGCGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGCAAACCACTTTCCCAGGATGGATCTCCATTACCAACTGATAACCAAGGAAATTATGTTCTTGTTCCAACTGGAGAAGATGTTACCAAATATCTTCCAACTGATGAATCTGGAAACGTCATCTATCCAATCACTAGACCAGATGGAACTCCACTCGGAACTGATGCTTCAGGAAACTTTGTTACCGATGATGGTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACYGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTGGAAACTATGTTCTCATCCCTACCGAGGAAGACACCACCAAGACTCTTCCTACGGATGATTCTGGTATTGTCATTTATCCAATCACAAGACCAGATGGAACTCCACTTGGAACGGACTCGACTGGTGCTTATGTTACTGATGATGATCAAGTCATTGAAAAGAACGAAGATGGAAAACCATTGGGGCCAGATGGTCAGGTACTTCCAACTGATGCTTCTGGAAACTACATTTATCCAGTGACTGGATCAGATGGACAAGTTCTCCCAACTGATGCTGGTCTTCCTGTGATTGTTGATCAAAGTGGAAAACCGCTTCTAACAGATGCAACTGGAAACTATTTGGATAATAACGGAAATCCGATCGTTATTGAAAGTAATGAACCAACTGGACCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACCGTTGTTGAAAAGGAC</pcr_primer_p1>
		<pcr_primer_p2>CAGATGCATCAGTTGGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>GTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACCGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTG</canonical_amplicon>
		<polymorphic_amplicon>GTACCGTTGTTGAAAAGGACGACGAAGGAAAACCAGTAGGCCCTGATGGTGCTGTTCTCCCAACCGATGCTGACGGAAATTATATCTATCCGGCTGTTGGACCAGACGGACAAGTATTGCCAACGGATGCTTCTGGAAAAACTGTCTATCCAGTTCATGGATCTGACGGTACACCACTTCCAACYGATGCATCTGGAGCTGTCATTGGACCAGATGGAGAACCAATTCCAACCGATGCCAGTGGGAAACCACTTTCCAAGGATGGATCCCCACTTCCAACTGATGCATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35360</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239276</contig_pos>
        <strand>+</strand>
        <context>ATCCAGATGG[A/T]ACKCCAMTYC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGG</left_flank>
        <right_flank>ACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCCACAGACGGTGATAAGCAAATAAATCCAACAGACGCCTCAGGAAACTTGATTTACCCAATAATTGCTCCGGATGGATCGGTGATCGAGGGTCCAGAAAAGCCAGCAGAGCCAGTTGGTCCTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGA</canonical>
            <polymorphic>CGCCACAGACGGTGATAAGCAAATAAATCCAACAGACGCCTCAGGAAACTTGATTTACCCAATAATTGCTCCGGATGGATCGGTGATCGAGGGTCCAGAAAAGCCAGCAGAGCCAGTTGGTCCTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGWACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGTATTGGCTACAGATTCAAC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>517</pcr_amplicon_size>
		<canonical_amplicon>CAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>CAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGWACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35361</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239279</contig_pos>
        <strand>+</strand>
        <context>CAGATGGWAC[G/T]CCAMTYCCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAAC</left_flank>
        <right_flank>CCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACAGACGGTGATAAGCAAATAAATCCAACAGACGCCTCAGGAAACTTGATTTACCCAATAATTGCTCCGGATGGATCGGTGATCGAGGGTCCAGAAAAGCCAGCAGAGCCAGTTGGTCCTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATAC</canonical>
            <polymorphic>CACAGACGGTGATAAGCAAATAAATCCAACAGACGCCTCAGGAAACTTGATTTACCCAATAATTGCTCCGGATGGATCGGTGATCGAGGGTCCAGAAAAGCCAGCAGAGCCAGTTGGTCCTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACKCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTACAGATTCAACTGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>507</pcr_amplicon_size>
		<canonical_amplicon>GCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTAT</canonical_amplicon>
		<polymorphic_amplicon>GCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACKCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35362</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239283</contig_pos>
        <strand>+</strand>
        <context>TGGWACKCCA[A/C]TYCCAACYGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCA</left_flank>
        <right_flank>TCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGGTGATAAGCAAATAAATCCAACAGACGCCTCAGGAAACTTGATTTACCCAATAATTGCTCCGGATGGATCGGTGATCGAGGGTCCAGAAAAGCCAGCAGAGCCAGTTGGTCCTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGC</canonical>
            <polymorphic>GACGGTGATAAGCAAATAAATCCAACAGACGCCTCAGGAAACTTGATTTACCCAATAATTGCTCCGGATGGATCGGTGATCGAGGGTCCAGAAAAGCCAGCAGAGCCAGTTGGTCCTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAMTCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTACAGATTCAACTGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>507</pcr_amplicon_size>
		<canonical_amplicon>GCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTAT</canonical_amplicon>
		<polymorphic_amplicon>GCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAMTCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35363</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239285</contig_pos>
        <strand>+</strand>
        <context>GWACKCCAMT[C/T]CCAACYGATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAAT</left_flank>
        <right_flank>CCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGTGATAAGCAAATAAATCCAACAGACGCCTCAGGAAACTTGATTTACCCAATAATTGCTCCGGATGGATCGGTGATCGAGGGTCCAGAAAAGCCAGCAGAGCCAGTTGGTCCTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGG</canonical>
            <polymorphic>CGGTGATAAGCAAATAAATCCAACAGACGCCTCAGGAAACTTGATTTACCCAATAATTGCTCCGGATGGATCGGTGATCGAGGGTCCAGAAAAGCCAGCAGAGCCAGTTGGTCCTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATYCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTACAGATTCAACTGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>507</pcr_amplicon_size>
		<canonical_amplicon>GCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTAT</canonical_amplicon>
		<polymorphic_amplicon>GCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATYCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35364</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239291</contig_pos>
        <strand>+</strand>
        <context>CAMTYCCAAC[C/T]GATGCTTCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAAC</left_flank>
        <right_flank>GATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGCAAATAAATCCAACAGACGCCTCAGGAAACTTGATTTACCCAATAATTGCTCCGGATGGATCGGTGATCGAGGGTCCAGAAAAGCCAGCAGAGCCAGTTGGTCCTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCC</canonical>
            <polymorphic>TAAGCAAATAAATCCAACAGACGCCTCAGGAAACTTGATTTACCCAATAATTGCTCCGGATGGATCGGTGATCGAGGGTCCAGAAAAGCCAGCAGAGCCAGTTGGTCCTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACYGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACYGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35365</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239303</contig_pos>
        <strand>+</strand>
        <context>ATGCTTCTGG[A/C]GCKGTCATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGG</left_flank>
        <right_flank>GCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAACAGACGCCTCAGGAAACTTGATTTACCCAATAATTGCTCCGGATGGATCGGTGATCGAGGGTCCAGAAAAGCCAGCAGAGCCAGTTGGTCCTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGA</canonical>
            <polymorphic>TCCAACAGACGCCTCAGGAAACTTGATTTACCCAATAATTGCTCCGGATGGATCGGTGATCGAGGGTCCAGAAAAGCCAGCAGAGCCAGTTGGTCCTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGMGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>284 154 129 89 62 60 48 31 31 29 27 24 17 15</canonical_bands>
                <polymorphic_bands>315 154 129 89 62 60 48 31 29 27 24 17 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGMGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35366</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239306</contig_pos>
        <strand>+</strand>
        <context>CTTCTGGMGC[G/T]GTCATTGGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGC</left_flank>
        <right_flank>GTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAGACGCCTCAGGAAACTTGATTTACCCAATAATTGCTCCGGATGGATCGGTGATCGAGGGTCCAGAAAAGCCAGCAGAGCCAGTTGGTCCTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGG</canonical>
            <polymorphic>AACAGACGCCTCAGGAAACTTGATTTACCCAATAATTGCTCCGGATGGATCGGTGATCGAGGGTCCAGAAAAGCCAGCAGAGCCAGTTGGTCCTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCKGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCKGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35367</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239343</contig_pos>
        <strand>+</strand>
        <context>TCCAACCGAT[A/G]CCAGTGGCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGAT</left_flank>
        <right_flank>CCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCCGGATGGATCGGTGATCGAGGGTCCAGAAAAGCCAGCAGAGCCAGTTGGTCCTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTA</canonical>
            <polymorphic>GCTCCGGATGGATCGGTGATCGAGGGTCCAGAAAAGCCAGCAGAGCCAGTTGGTCCTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATRCCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATRCCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35368</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239375</contig_pos>
        <strand>+</strand>
        <context>AGGATGGATC[C/T]CCRWKRCCWA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATC</left_flank>
        <right_flank>CCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGCCAGCAGAGCCAGTTGGTCCTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGC</canonical>
            <polymorphic>AAAGCCAGCAGAGCCAGTTGGTCCTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCYCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGATCC</site>
                <isoschizomers>
                    <enzyme>BamHI</enzyme>
                </isoschizomers>
                <canonical_bands>495 435 70</canonical_bands>
                <polymorphic_bands>930 70</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>497 287 148 68</canonical_bands>
                <polymorphic_bands>784 148 68</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>495 435 70</canonical_bands>
                <polymorphic_bands>930 70</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCYCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35369</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239378</contig_pos>
        <strand>+</strand>
        <context>ATGGATCYCC[A/G]WKRCCWACWG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCC</left_flank>
        <right_flank>AGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCAGCAGAGCCAGTTGGTCCTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCT</canonical>
            <polymorphic>GCCAGCAGAGCCAGTTGGTCCTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCRAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCRAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35370</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239379</contig_pos>
        <strand>+</strand>
        <context>TGGATCYCCR[A/T]KRCCWACWGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCG</left_flank>
        <right_flank>GGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGCAGAGCCAGTTGGTCCTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTT</canonical>
            <polymorphic>CCAGCAGAGCCAGTTGGTCCTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGWGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGGCCT</site>
                <isoschizomers>
                    <enzyme>AatI</enzyme>
                    <enzyme>Eco147I</enzyme>
                    <enzyme>PceI</enzyme>
                    <enzyme>SseBI</enzyme>
                    <enzyme>StuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGWGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35371</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239380</contig_pos>
        <strand>+</strand>
        <context>GGATCYCCRW[G/T]RCCWACWGAY</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGA</left_flank>
        <right_flank>GCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGCAGAGCCAGTTGGTCCTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTC</canonical>
            <polymorphic>CAGCAGAGCCAGTTGGTCCTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAKGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGGCCT</site>
                <isoschizomers>
                    <enzyme>AatI</enzyme>
                    <enzyme>Eco147I</enzyme>
                    <enzyme>PceI</enzyme>
                    <enzyme>SseBI</enzyme>
                    <enzyme>StuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>482 320 101 52 31 14</canonical_bands>
                <polymorphic_bands>482 334 101 52 31</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 260 239</canonical_bands>
                <polymorphic_bands>761 239</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>338 253 155 148 85 8 7 6</canonical_bands>
                <polymorphic_bands>408 338 148 85 8 7 6</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAKGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35372</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239381</contig_pos>
        <strand>+</strand>
        <context>GATCYCCRWK[A/G]CCWACWGAYA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAG</left_flank>
        <right_flank>CCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCAGAGCCAGTTGGTCCTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCC</canonical>
            <polymorphic>AGCAGAGCCAGTTGGTCCTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGRCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGGCCT</site>
                <isoschizomers>
                    <enzyme>AatI</enzyme>
                    <enzyme>Eco147I</enzyme>
                    <enzyme>PceI</enzyme>
                    <enzyme>SseBI</enzyme>
                    <enzyme>StuI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>481 320 101 53 31 14</canonical_bands>
                <polymorphic_bands>481 334 101 53 31</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 260 240</canonical_bands>
                <polymorphic_bands>760 240</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>338 253 155 148 85 7 7 7</canonical_bands>
                <polymorphic_bands>408 338 148 85 7 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGRCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35373</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239384</contig_pos>
        <strand>+</strand>
        <context>CYCCRWKRCC[A/T]ACWGAYAACC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCC</left_flank>
        <right_flank>ACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGCCAGTTGGTCCTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAAC</canonical>
            <polymorphic>AGAGCCAGTTGGTCCTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCWACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGGCCT</site>
                <isoschizomers>
                    <enzyme>AatI</enzyme>
                    <enzyme>Eco147I</enzyme>
                    <enzyme>PceI</enzyme>
                    <enzyme>SseBI</enzyme>
                    <enzyme>StuI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 343 156</canonical_bands>
                <polymorphic_bands>657 343</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCWACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35374</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239387</contig_pos>
        <strand>+</strand>
        <context>CRWKRCCWAC[A/T]GAYAACCAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTAC</left_flank>
        <right_flank>GACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCAGTTGGTCCTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGA</canonical>
            <polymorphic>GCCAGTTGGTCCTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACWGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 340 156</canonical_bands>
                <polymorphic_bands>660 340</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACWGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35375</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239390</contig_pos>
        <strand>+</strand>
        <context>KRCCWACWGA[C/T]AACCAAGRAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGA</left_flank>
        <right_flank>AACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTGGTCCTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGA</canonical>
            <polymorphic>AGTTGGTCCTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGAYAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGAYAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35376</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239398</contig_pos>
        <strand>+</strand>
        <context>GAYAACCAAG[A/G]AAATTAYGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAG</left_flank>
        <right_flank>AAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAA</canonical>
            <polymorphic>CTGATGGAAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGRAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGRAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35377</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239405</contig_pos>
        <strand>+</strand>
        <context>AAGRAAATTA[C/T]GTTCTTGTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTA</left_flank>
        <right_flank>GTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCAT</canonical>
            <polymorphic>AAAAGTATCAATATTATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTAYGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>499 336 165</canonical_bands>
                <polymorphic_bands>835 165</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTAYGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35378</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239420</contig_pos>
        <strand>+</strand>
        <context>TTGTTCCAAC[C/T]GGAGAMGATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAAC</left_flank>
        <right_flank>GGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAA</canonical>
            <polymorphic>ATTTCGTTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACYGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>502 280 218</canonical_bands>
                <polymorphic_bands>782 218</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 280 219</canonical_bands>
                <polymorphic_bands>781 219</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACYGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35379</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239426</contig_pos>
        <strand>+</strand>
        <context>CAACYGGAGA[A/C]GATGTTACCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGA</left_flank>
        <right_flank>GATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGA</canonical>
            <polymorphic>TTCTGTTTAATCGTACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGAMGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGAMGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35380</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239439</contig_pos>
        <strand>+</strand>
        <context>TGTTACCAAA[A/T]MWCTYCCAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAA</left_flank>
        <right_flank>CACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTT</canonical>
            <polymorphic>TACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAWCACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAWCACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35381</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239440</contig_pos>
        <strand>+</strand>
        <context>GTTACCAAAW[A/C]WCTYCCAACT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAA</left_flank>
        <right_flank>ACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTG</canonical>
            <polymorphic>ACATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAAMACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>148 105 103 96 93 84 84 75 57 51 40 33 20 8 3</canonical_bands>
                <polymorphic_bands>148 124 105 103 96 93 84 75 57 51 33 20 8 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAAMACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35382</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239441</contig_pos>
        <strand>+</strand>
        <context>TTACCAAAWM[A/T]CTYCCAACTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAAC</left_flank>
        <right_flank>CTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGC</canonical>
            <polymorphic>CATTCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACWCTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>149 105 103 95 93 84 84 75 57 51 40 33 20 8 3</canonical_bands>
                <polymorphic_bands>149 124 105 103 95 93 84 75 57 51 33 20 8 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACWCTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35383</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239444</contig_pos>
        <strand>+</strand>
        <context>CCAAAWMWCT[C/T]CCAACTGATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACT</left_flank>
        <right_flank>CCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGAC</canonical>
            <polymorphic>TCCATTTTCAGGTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTYCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTYCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35384</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239455</contig_pos>
        <strand>+</strand>
        <context>CCAACTGATG[A/G]MKMWGGAAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATG</left_flank>
        <right_flank>CGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAG</canonical>
            <polymorphic>GTTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGRCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNTGG</site>
                <isoschizomers>
                    <enzyme>AccB7I</enzyme>
                    <enzyme>PflBI</enzyme>
                    <enzyme>PflMI</enzyme>
                    <enzyme>Van91I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>258 249 247 186 60</canonical_bands>
                <polymorphic_bands>435 258 247 60</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGRCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35385</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239456</contig_pos>
        <strand>+</strand>
        <context>CAACTGATGR[A/C]KMWGGAAACR</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGG</left_flank>
        <right_flank>GAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGG</canonical>
            <polymorphic>TTTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGMGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGMGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35386</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239457</contig_pos>
        <strand>+</strand>
        <context>AACTGATGRM[G/T]MWGGAAACRT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGC</left_flank>
        <right_flank>AAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGA</canonical>
            <polymorphic>TTTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCKAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCKAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35387</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239458</contig_pos>
        <strand>+</strand>
        <context>ACTGATGRMK[A/C]WGGAAACRTY</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCG</left_flank>
        <right_flank>AGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAG</canonical>
            <polymorphic>TTGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGMAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGMAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35388</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239459</contig_pos>
        <strand>+</strand>
        <context>CTGATGRMKM[A/T]GGAAACRTYA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGA</left_flank>
        <right_flank>GGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGC</canonical>
            <polymorphic>TGCCAACCGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAWGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAWGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35389</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239466</contig_pos>
        <strand>+</strand>
        <context>MKMWGGAAAC[A/G]TYATCTATCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAAC</left_flank>
        <right_flank>TCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTA</canonical>
            <polymorphic>CGACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACRTCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACRTCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35390</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239468</contig_pos>
        <strand>+</strand>
        <context>MWGGAAACRT[C/T]ATCTATCCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACAT</left_flank>
        <right_flank>ATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAAC</canonical>
            <polymorphic>ACGATGAAGGATATTTTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATYATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATYATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35391</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239483</contig_pos>
        <strand>+</strand>
        <context>ATCCAATCAC[C/T]AGACCAGATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCAC</left_flank>
        <right_flank>AGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAAT</canonical>
            <polymorphic>TTATTGACATGGATGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACYAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACYAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35392</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239496</contig_pos>
        <strand>+</strand>
        <context>ACCAGATGGA[A/T]CWYYACTYGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGA</left_flank>
        <right_flank>CATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGAT</canonical>
            <polymorphic>TGGACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGAWCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>312 268 123 106 106 85</canonical_bands>
                <polymorphic_bands>435 268 106 106 85</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGAWCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35393</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239498</contig_pos>
        <strand>+</strand>
        <context>CAGATGGAWC[A/T]YYACTYGGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATC</left_flank>
        <right_flank>TTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGA</canonical>
            <polymorphic>GACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCWTTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCWTTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35394</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239499</contig_pos>
        <strand>+</strand>
        <context>AGATGGAWCW[C/T]YACTYGGAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCA</left_flank>
        <right_flank>TACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAA</canonical>
            <polymorphic>ACAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCAYTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCAYTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35395</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239500</contig_pos>
        <strand>+</strand>
        <context>GATGGAWCWY[C/T]ACTYGGAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCAT</left_flank>
        <right_flank>ACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAG</canonical>
            <polymorphic>CAAAGACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATYACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATYACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35396</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239504</contig_pos>
        <strand>+</strand>
        <context>GAWCWYYACT[C/T]GGAACTGAYK</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACT</left_flank>
        <right_flank>GGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGG</canonical>
            <polymorphic>GACTTCCGACAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTYGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTYGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35397</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239513</contig_pos>
        <strand>+</strand>
        <context>TYGGAACTGA[C/T]KCWACWGGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGA</left_flank>
        <right_flank>TCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGT</canonical>
            <polymorphic>CAGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGAYTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGAYTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35398</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239514</contig_pos>
        <strand>+</strand>
        <context>YGGAACTGAY[G/T]CWACWGGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGAC</left_flank>
        <right_flank>CTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTT</canonical>
            <polymorphic>AGATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACKCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>503 279 99 60 57 2</canonical_bands>
                <polymorphic_bands>782 99 60 57 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACKCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35399</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239516</contig_pos>
        <strand>+</strand>
        <context>GAACTGAYKC[A/T]ACWGGAAAST</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTC</left_flank>
        <right_flank>ACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGG</canonical>
            <polymorphic>ATTCGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCWACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCWACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35400</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239519</contig_pos>
        <strand>+</strand>
        <context>CTGAYKCWAC[A/T]GGAAASTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTAC</left_flank>
        <right_flank>GGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCC</canonical>
            <polymorphic>CGGTTGGACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACWGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACWGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35401</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239525</contig_pos>
        <strand>+</strand>
        <context>CWACWGGAAA[C/G]TTCATCACTG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAA</left_flank>
        <right_flank>TTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGG</canonical>
            <polymorphic>GACTTGTTGTGTATCCCGTTACCAATCCAGATGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAASTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAASTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35402</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239556</contig_pos>
        <strand>+</strand>
        <context>AAGGGTGGAA[A/G]TTGATGACGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAA</left_flank>
        <right_flank>TTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAAC</canonical>
            <polymorphic>TGGTTCTCCTGTGGGAACTGACTCGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAARTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAARTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35403</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239579</contig_pos>
        <strand>+</strand>
        <context>GAAAACCAGT[A/T]GGTCCAGATG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGT</left_flank>
        <right_flank>GGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACC</canonical>
            <polymorphic>CGATTGGAGCATATGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTWGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTWGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35404</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239592</contig_pos>
        <strand>+</strand>
        <context>TCCAGATGGT[G/T]CGGTTCTTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGT</left_flank>
        <right_flank>CGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTC</canonical>
            <polymorphic>TGTTACTCAAGACGGAAAGGTTATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTKCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTKCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35405</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239613</contig_pos>
        <strand>+</strand>
        <context>AACTGATGCT[G/T]MAGGAAACTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCT</left_flank>
        <right_flank>CAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGA</canonical>
            <polymorphic>TATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTKCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>344 284 89 64 62 60 31 31 31 4</canonical_bands>
                <polymorphic_bands>344 284 91 89 64 62 31 31 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTKCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35406</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239614</contig_pos>
        <strand>+</strand>
        <context>ACTGATGCTK[A/C]AGGAAACTAC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTT</left_flank>
        <right_flank>AGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAA</canonical>
            <polymorphic>ATCGAGAAGAACGAAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTMAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>344 284 89 65 62 60 31 31 31 3</canonical_bands>
                <polymorphic_bands>344 284 91 89 65 62 31 31 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTMAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35407</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239627</contig_pos>
        <strand>+</strand>
        <context>GAAACTACAT[A/C]TATCCRGCTR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACAT</left_flank>
        <right_flank>TATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCC</canonical>
            <polymorphic>AAGACGGAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATMTATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATMTATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35408</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239633</contig_pos>
        <strand>+</strand>
        <context>ACATMTATCC[A/G]GCTRTYGGMC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCC</left_flank>
        <right_flank>GCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCG</canonical>
            <polymorphic>GAAAACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCRGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>501 240 195 64</canonical_bands>
                <polymorphic_bands>741 195 64</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>253 155 148 93 85 67 66 64 44 18 7</canonical_bands>
                <polymorphic_bands>260 155 148 93 85 67 66 64 44 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCRGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35409</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239637</contig_pos>
        <strand>+</strand>
        <context>MTATCCRGCT[A/G]TYGGMCCAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCT</left_flank>
        <right_flank>TCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGT</canonical>
            <polymorphic>ACCGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTRTCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTRTCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35410</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239639</contig_pos>
        <strand>+</strand>
        <context>ATCCRGCTRT[C/T]GGMCCAGAYG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTAT</left_flank>
        <right_flank>GGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCC</canonical>
            <polymorphic>CGGTTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATYGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATYGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35411</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239642</contig_pos>
        <strand>+</strand>
        <context>CRGCTRTYGG[A/C]CCAGAYGGAC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGG</left_flank>
        <right_flank>CCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGA</canonical>
            <polymorphic>TTGGACCTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGMCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 260 239</canonical_bands>
                <polymorphic_bands>761 239</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>253 155 148 85 84 73 67 66 44 18 7</canonical_bands>
                <polymorphic_bands>253 155 155 85 84 73 67 66 44 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGMCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35412</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239648</contig_pos>
        <strand>+</strand>
        <context>TYGGMCCAGA[C/T]GGACAAGTRK</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGA</left_flank>
        <right_flank>GGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTAC</canonical>
            <polymorphic>CTGATGGACAAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGAYGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGAYGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35413</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239657</contig_pos>
        <strand>+</strand>
        <context>AYGGACAAGT[A/G]KTGCCAACSG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGT</left_flank>
        <right_flank>GTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCC</canonical>
            <polymorphic>AAGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTRGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>287 215 200 150 148</canonical_bands>
                <polymorphic_bands>435 215 200 150</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>330 105 103 84 84 75 57 51 40 20 17 13 8 5 5 3</canonical_bands>
                <polymorphic_bands>330 108 103 84 84 75 57 51 40 20 17 13 8 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTRGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35414</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239658</contig_pos>
        <strand>+</strand>
        <context>YGGACAAGTR[G/T]TGCCAACSGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTG</left_flank>
        <right_flank>TGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCA</canonical>
            <polymorphic>AGTGCTCCCAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGKTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>287 214 201 150 148</canonical_bands>
                <polymorphic_bands>435 214 201 150</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>330 105 103 84 84 75 57 51 40 20 17 13 8 6 4 3</canonical_bands>
                <polymorphic_bands>330 105 103 84 84 75 60 51 40 20 17 13 8 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGKTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35415</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239666</contig_pos>
        <strand>+</strand>
        <context>TRKTGCCAAC[C/G]GATGCTTCWG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAAC</left_flank>
        <right_flank>GATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGC</canonical>
            <polymorphic>CAACCGATGAATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACSGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACSGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35416</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239675</contig_pos>
        <strand>+</strand>
        <context>CSGATGCTTC[A/T]GGAAAAMCWA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTC</left_flank>
        <right_flank>GGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGAGC</canonical>
            <polymorphic>AATCAGGAAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCWGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TATAATCAGTTGGAAGTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCWGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35417</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239682</contig_pos>
        <strand>+</strand>
        <context>TTCWGGAAAA[A/C]CWATCTATCC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAA</left_flank>
        <right_flank>CAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGAGCTGTTATT</canonical>
            <polymorphic>AAACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAAMCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGAGCTGTTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>CTTTATAATCAGTTGGAAGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>495</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAAMCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35418</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>239684</contig_pos>
        <strand>+</strand>
        <context>CWGGAAAAMC[A/T]ATCTATCCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACC</left_flank>
        <right_flank>ATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGAGCTGTTATTGG</canonical>
            <polymorphic>ACTTCATCTATCCCGTTATTGGACCAGATGGACAAGTATTGGCTACAGATTCAACTGGAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCWATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGAGCTGTTATTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAAACGGTTTACCCAGTC</pcr_primer_p1>
		<pcr_primer_p2>TTTCCTTTATAATCAGTTGGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>499</pcr_amplicon_size>
		<canonical_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAA</canonical_amplicon>
		<polymorphic_amplicon>GAAAAACGGTTTACCCAGTCCGTGATCCAGATGGAACGCCAATCCCAACTGATGCTTCTGGAGCGGTCATTGGACCAGATGGAGAACCAATTCCAACCGATACCAGTGGCAAACCACTTTCCCAGGATGGATCCCCGAGGCCTACAGACAACCAAGAAAATTACGTTCTTGTTCCAACCGGAGACGATGTTACCAAAACACTCCCAACTGATGGCGAAGGAAACATCATCTATCCAATCACCAGACCAGATGGATCATTACTTGGAACTGACTCTACTGGAAAGTTCATCACTGATGACGGTATAAGGGTGGAAGTTGATGACGAAGGAAAACCAGTTGGTCCAGATGGTTCGGTTCTTCCAACTGATGCTTCAGGAAACTACATATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCWATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35419</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>240125</contig_pos>
        <strand>+</strand>
        <context>AGCATGTGTA[C/T]CCAGTTCGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTA</left_flank>
        <right_flank>CCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGAGCTGTTATTGGTCCAGATGGAGAACCAATTCCAACAGATGCCAGTGGCAAACCACTTTCTAAGGATGGATCTCCATTGCCAACTGATGCTTCCGGCAACTACATCCTTGTTCCAGCAGAAGAAGAAACAGCAAAGGCCCTACCAACAGATTCCGAAGGAAACGTCATTTATCCAATCACTAATCCAGATGGAACTCCACTTGGAACTGATTCTTCGGGTGCTTTCGTCACTCAAGATGGGAGTGTTATTGAGCAGAACGAGGATGGAAAACCAGTTGGACCGGATGGACAGGTAGGATTTCATGTGCTGTGTTACTGAACATTCGTTACTCGTACAGTTTGGTTTGCACCACTAGAAAACAAAATTCTTTAACAAAATTATTGATCTGGCAACAACATGAATTAGAAAGATTTATTACTATTGGGTCTCTTTTTTTCATCATTATACTATAG</canonical>
            <polymorphic>TATATCCAGCTATCGGCCCAGATGGACAAGTGGTGCCAACCGATGCTTCAGGAAAACCAATCTATCCAGTCCGCGGACCAGATGGAACTCCACTTCCAACTGATTATAAAGGAAACGTCATCGGACCAGATGGAGAACCAATTCCAACTGATACGAGCGGAAAGCCACTCTCCAAGGATGGATCCCCATTGCCAACAGATAACCAAGGCAATTATGTACTCGTCCCAATTGGAGAAGATGTTACCGAAGCTCTTCCAACTGACGAGGCTGGAAACATCATTTATCCGATCGTCAAACCAGATGGAAAACTCCTTGCGACTGATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTAYCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGAGCTGTTATTGGTCCAGATGGAGAACCAATTCCAACAGATGCCAGTGGCAAACCACTTTCTAAGGATGGATCTCCATTGCCAACTGATGCTTCCGGCAACTACATCCTTGTTCCAGCAGAAGAAGAAACAGCAAAGGCCCTACCAACAGATTCCGAAGGAAACGTCATTTATCCAATCACTAATCCAGATGGAACTCCACTTGGAACTGATTCTTCGGGTGCTTTCGTCACTCAAGATGGGAGTGTTATTGAGCAGAACGAGGATGGAAAACCAGTTGGACCGGATGGACAGGTAGGATTTCATGTGCTGTGTTACTGAACATTCGTTACTCGTACAGTTTGGTTTGCACCACTAGAAAACAAAATTCTTTAACAAAATTATTGATCTGGCAACAACATGAATTAGAAAGATTTATTACTATTGGGTCTCTTTTTTTCATCATTATACTATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACTACAGGAGCCTTCGTAAC</pcr_primer_p1>
		<pcr_primer_p2>TCTCCATCTGGACCAATAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTATCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGAGCTGTTATTGGTCCAGATGGAGA</canonical_amplicon>
		<polymorphic_amplicon>ATACTACAGGAGCCTTCGTAACAGACGATGGGGAAATAATTGAAAGAGATGAAGAAGGAAAACCAGTTGGTCCAGACGGCTCAGTTCTCCCAACCGACGCATCCGGAAACTACATCTACCCAGCTGTAGGACCAGATGGACAAGTCCTACCAACAGACGGAACTGGAAAGCATGTGTAYCCAGTTCGTGGTCCAGATGGTACTCCACTTCCAACCGATGCTTCTGGAGCTGTTATTGGTCCAGATGGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35420</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>247859</contig_pos>
        <strand>+</strand>
        <context>AGTTCTTGGA[C/T]CCATTGCTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGATCGTTGTTATTCCACAATGGCGTGGAGCTGATTCTGAAGTTCTTGGA</left_flank>
        <right_flank>CCATTGCTGACTACATTTGCAAGGTATGACAATTCTATTATGTTCATTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCATGAAGGAGCTGATTAAGAACTTCCTCACTGAACACTTCAATCTTCGTAAACATCAAGTCCGTGTTGGACTCGTCAAGTACGGAGATGGATCAGAAATTCCAATTTCATTGGGAGATTACGATAATGAAGATGATCTGGTTCATCGTATAAGCGAGTCTCGTCGTCTCAAGGGACGTGCTCAACTCGGAGCAGGTCTTCGTGAGGCTCTCGATGAGCTCTCGATTTCTGGAGTTGATGGAGTACCACAGATTGTTTTGGTTGTAAAGAACGGAAAAGCCAGGTATGTGTTTTTGCAGAAAGCGAACATTAAATTAAAATTATTTCAGTGACGACTACTCATCTGCTGTCAAATCTCTGAAATCTGAACGTAATGTTACGATATTCGTGGTGGATTCTGGAGATGATGAAAGCCAGGACCAGAATTCGGAACTCACGGATGCCGATAAGATCGTTGTTATTCCACAATGGCGTGGAGCTGATTCTGAAGTTCTTGGACCCATTGCTGACTACATTTGCAAGGTATGACAATTCTATTATGTTCATTTACCGTTCTAATCTTTCAGATCGTTCCAAATGTCGAAAGTGCTCGCACCTGGCCAACGCCTCGCACAAAGGCAACAACTCTAGCTGGTTCTAGAAGAAGTTGCTCTACTATCGACTACGAATCTGACGTCATCATCGTGTTGGATTCTTCCGAAAACTTCACTCCAGATGAATTCGATAGCATGAAGGACGCAGTTGCCAGCATCGTAGACACAGGATTTGATCTTGCTCCAGATGTTTCTAAGATTGGTTTTGTCATCTACAGTGACAAGGTCGCTGTTCCAGTGGCTCTTGGTCATTATGAAGATAAGATTGAACTACTCGAAAAGATTGTGGATGCTGAAAAGATTAATGATGGAGTTGCAATTGCTCTTTACGGATTGAATGCTGCTCGTCAACAATTCCAACTTCATGGACGTGAGAATGCTACAAAGATCGTTCTTCTCATCACCA</canonical>
            <polymorphic>GTCATGAAGGAGCTGATTAAGAACTTCCTCACTGAACACTTCAATCTTCGTAAACATCAAGTCCGTGTTGGACTCGTCAAGTACGGAGATGGATCAGAAATTCCAATTTCATTGGGAGATTACGATAATGAAGATGATCTGGTTCATCGTATAAGCGAGTCTCGTCGTCTCAAGGGACGTGCTCAACTCGGAGCAGGTCTTCGTGAGGCTCTCGATGAGCTCTCGATTTCTGGAGTTGATGGAGTACCACAGATTGTTTTGGTTGTAAAGAACGGAAAAGCCAGGTATGTGTTTTTGCAGAAAGCGAACATTAAATTAAAATTATTTCAGTGACGACTACTCATCTGCTGTCAAATCTCTGAAATCTGAACGTAATGTTACGATATTCGTGGTGGATTCTGGAGATGATGAAAGCCAGGACCAGAATTCGGAACTCACGGATGCCGATAAGATCGTTGTTATTCCACAATGGCGTGGAGCTGATTCTGAAGTTCTTGGAYCCATTGCTGACTACATTTGCAAGGTATGACAATTCTATTATGTTCATTTACCGTTCTAATCTTTCAGATCGTTCCAAATGTCGAAAGTGCTCGCACCTGGCCAACGCCTCGCACAAAGGCAACAACTCTAGCTGGTTCTAGAAGAAGTTGCTCTACTATCGACTACGAATCTGACGTCATCATCGTGTTGGATTCTTCCGAAAACTTCACTCCAGATGAATTCGATAGCATGAAGGACGCAGTTGCCAGCATCGTAGACACAGGATTTGATCTTGCTCCAGATGTTTCTAAGATTGGTTTTGTCATCTACAGTGACAAGGTCGCTGTTCCAGTGGCTCTTGGTCATTATGAAGATAAGATTGAACTACTCGAAAAGATTGTGGATGCTGAAAAGATTAATGATGGAGTTGCAATTGCTCTTTACGGATTGAATGCTGCTCGTCAACAATTCCAACTTCATGGACGTGAGAATGCTACAAAGATCGTTCTTCTCATCACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>503 418 79</canonical_bands>
                <polymorphic_bands>582 418</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>503 418 79</canonical_bands>
                <polymorphic_bands>582 418</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTAAAATTATTTCAGTGACGAC</pcr_primer_p1>
		<pcr_primer_p2>AAGATTAGAACGGTAAATGAACA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAATTAAAATTATTTCAGTGACGACTACTCATCTGCTGTCAAATCTCTGAAATCTGAACGTAATGTTACGATATTCGTGGTGGATTCTGGAGATGATGAAAGCCAGGACCAGAATTCGGAACTCACGGATGCCGATAAGATCGTTGTTATTCCACAATGGCGTGGAGCTGATTCTGAAGTTCTTGGACCCATTGCTGACTACATTTGCAAGGTATGACAATTCTATTATGTTCATTTACCGTTCTAATCTT</canonical_amplicon>
		<polymorphic_amplicon>AAATTAAAATTATTTCAGTGACGACTACTCATCTGCTGTCAAATCTCTGAAATCTGAACGTAATGTTACGATATTCGTGGTGGATTCTGGAGATGATGAAAGCCAGGACCAGAATTCGGAACTCACGGATGCCGATAAGATCGTTGTTATTCCACAATGGCGTGGAGCTGATTCTGAAGTTCTTGGAYCCATTGCTGACTACATTTGCAAGGTATGACAATTCTATTATGTTCATTTACCGTTCTAATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35421</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>374537</contig_pos>
        <strand>+</strand>
        <context>CAATTTCAGC[A/T]TTTTTTTWAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGATACCGGAAATATACATAGAAACATTTATATCTATCTCAATTTCAGC</left_flank>
        <right_flank>TTTTTTTTAAATTAAATGAAACGTTTTAAAATCCGCACGTAATCATAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTTAAAACAATTTCAGAATAAAATAAATAAAGTTGGATTAAAACTGCAGTGAAATCTTCAACAACCAAAACAGACAGTATTGCTAACATATACCAGATTCGTCGGTTAAGAATCAAAAAAGAGTTACAAGGTGGCCGAGTAGTGCAACCCCGCCGGCCACGGCCTCTGCCTTTGGATAGTTAGCAAAACTGGTTCTTTGTGTGTACAGCAGTACAATCAACTCTATTGATGTTCATTTACCAGCATTTACCGGCATTCTCTGGTTGTACTGAGTTTGTATCGATAGAAATTATATTTTTATATACGATTGGTGCATACCTTGTAATTTAAATATTTTAGTTGAATATTTTAAACTATAGAATATTAATGTATTAGATAAAAGTTTTAGAAAAGTACATTGATGGTTATTTTTATTCCAGAAATCTGCAATGCCGCTTGTATTTCTCAGATACCGGAAATATACATAGAAACATTTATATCTATCTCAATTTCAGCTTTTTTTTTAAATTAAATGAAACGTTTTAAAATCCGCACGTAATCATAAAACGATGTTTTTACGGTACTTACTGTTTGTTTTTTCGAATTTCCCTTCTCTTGTTTTGCAATTTTAAAATTTTTAATACCGTAACATTGAAGGCGCATTCTAAAGTTTTGTTCGAGGGTCTCGCAGTCGTCACTCGTGACGATTTACGAGCTTCTTTGTGTTATTTTTATCAGCAGCCTGCATTTGTTTTAAACAAAAATCCTCCATCTTCATCTTCACAAGAATGCGTACAAAATTTATATAACCAATTTTTGAATTTCTAGATATGATTTCGTTCGAAGATTTCCTCCTCCGCCCTTCCAAGGTTGTCGATCCATTCAATCGTTTCGTAGCAAAAATTGACCCGTTTCTCACTCTTGTGGAATTTTGTCAAGTGATTGGACCCAGACCTCTCGCTGTTGTCTCTCAACAACCAAACGACAAAAGTAAGCTCAAAATAATTTTTTTCGAAA</canonical>
            <polymorphic>ATTTTTTAAAACAATTTCAGAATAAAATAAATAAAGTTGGATTAAAACTGCAGTGAAATCTTCAACAACCAAAACAGACAGTATTGCTAACATATACCAGATTCGTCGGTTAAGAATCAAAAAAGAGTTACAAGGTGGCCGAGTAGTGCAACCCCGCCGGCCACGGCCTCTGCCTTTGGATAGTTAGCAAAACTGGTTCTTTGTGTGTACAGCAGTACAATCAACTCTATTGATGTTCATTTACCAGCATTTACCGGCATTCTCTGGTTGTACTGAGTTTGTATCGATAGAAATTATATTTTTATATACGATTGGTGCATACCTTGTAATTTAAATATTTTAGTTGAATATTTTAAACTATAGAATATTAATGTATTAGATAAAAGTTTTAGAAAAGTACATTGATGGTTATTTTTATTCCAGAAATCTGCAATGCCGCTTGTATTTCTCAGATACCGGAAATATACATAGAAACATTTATATCTATCTCAATTTCAGCWTTTTTTTTAAATTAAATGAAACGTTTTAAAATCCGCACGTAATCATAAAACGATGTTTTTACGGTACTTACTGTTTGTTTTTTCGAATTTCCCTTCTCTTGTTTTGCAATTTTAAAATTTTTAATACCGTAACATTGAAGGCGCATTCTAAAGTTTTGTTCGAGGGTCTCGCAGTCGTCACTCGTGACGATTTACGAGCTTCTTTGTGTTATTTTTATCAGCAGCCTGCATTTGTTTTAAACAAAAATCCTCCATCTTCATCTTCACAAGAATGCGTACAAAATTTATATAACCAATTTTTGAATTTCTAGATATGATTTCGTTCGAAGATTTCCTCCTCCGCCCTTCCAAGGTTGTCGATCCATTCAATCGTTTCGTAGCAAAAATTGACCCGTTTCTCACTCTTGTGGAATTTTGTCAAGTGATTGGACCCAGACCTCTCGCTGTTGTCTCTCAACAACCAAACGACAAAAGTAAGCTCAAAATAATTTTTTTCGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>498 280 200 22</canonical_bands>
                <polymorphic_bands>698 280 22</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>332 254 200 138 26 22 22 6</canonical_bands>
                <polymorphic_bands>532 254 138 26 22 22 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGGTGCATACCTTGTAATTT</pcr_primer_p1>
		<pcr_primer_p2>AAAAACATCGTTTTATGATTACG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTGGTGCATACCTTGTAATTTAAATATTTTAGTTGAATATTTTAAACTATAGAATATTAATGTATTAGATAAAAGTTTTAGAAAAGTACATTGATGGTTATTTTTATTCCAGAAATCTGCAATGCCGCTTGTATTTCTCAGATACCGGAAATATACATAGAAACATTTATATCTATCTCAATTTCAGCTTTTTTTTTAAATTAAATGAAACGTTTTAAAATCCGCACGTAATCATAAAACGATGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTGGTGCATACCTTGTAATTTAAATATTTTAGTTGAATATTTTAAACTATAGAATATTAATGTATTAGATAAAAGTTTTAGAAAAGTACATTGATGGTTATTTTTATTCCAGAAATCTGCAATGCCGCTTGTATTTCTCAGATACCGGAAATATACATAGAAACATTTATATCTATCTCAATTTCAGCWTTTTTTTTAAATTAAATGAAACGTTTTAAAATCCGCACGTAATCATAAAACGATGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35422</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>411692</contig_pos>
        <strand>+</strand>
        <context>GCACACTTCA[C/G]AAAATGATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTTCCAAACGTTTAAAAAGTGTATTTAACCCTCAAATAAGGCACACTTCA</left_flank>
        <right_flank>AAAATGATAAGGTAGATGACACCTTGTGTAAACGTCGTTCTTGCACTTAA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATTTTATTCACTACCGCTGAATGACTCAAATTTTCTGTCGAGCTCCAAAAACTTATAATTTTTGTTTTCTTTTCTTTTAAGTTTCAATTTTTAATATCGGCATTTGCATCAGATTTTTAAAACGTTTTTCTGTGAAGGATATTAAGTGGGTTTTTTGTAAATCGGGACCTGCCATAGTTTTTTTAGAATCAAAGCTATAGACGAAACGAACCGAAAATAACAGACAGGGCCCAGTTCAGCCACTCTATGGCTTTTATTTTTGTCCATATACAGGATACAATTTTTCGAATAATACCAGTTTGCAGTACTCAACGAGTTCTAATTTAGTTAATCAAAAAGTAATGATTCTAAAAGCAGCTATGGCAGAAGAATCTAGAAACGGCGAAGGCCCGCCATAGGCCCGTTTGACAAGTTTCTCAATTTCGCTGACCGTCATGAATCAAAAACCTTCCAAACGTTTAAAAAGTGTATTTAACCCTCAAATAAGGCACACTTCAGAAAATGATAAGGTAGATGACACCTTGTGTAAACGTCGTTCTTGCACTTAAAACTTTTGGTTAAGAAAATATGAACATTTCTTTCCAGATAGGATGGAATTCCAGTAAAAATTTCAAATGCAAAAATCGTACTTTGTATTTTTTTTTCTCGTTGAAACCGTATTCCTTGCAGAAACTCTTTTATTTACATTGTGAATATTTCACAAACTGTCTCAACTTTCCATCTTATCGTTTTCTATTTCCATATCGTCATTTCCTATTCTGTGCTCTTATCGGTTTTCGGAAAATTCCCAAATTTCGCCATTTTCATCTATCTTTGAAGTATATTAATACAACTACTATCTGTCCTGGAAAGGATGTAATTGCTACCTGACTCATAATTTCATTTTTTAAACAAATTTTTGTTACAGGTACTGTTTTGTGATTCTTTTTTCAATCGTCATTTTTAAAATAGTTTTCGAAGAACCGTTCATTGAGTACATGTACTTTGAGATCAAAAAT</canonical>
            <polymorphic>TGATTTTATTCACTACCGCTGAATGACTCAAATTTTCTGTCGAGCTCCAAAAACTTATAATTTTTGTTTTCTTTTCTTTTAAGTTTCAATTTTTAATATCGGCATTTGCATCAGATTTTTAAAACGTTTTTCTGTGAAGGATATTAAGTGGGTTTTTTGTAAATCGGGACCTGCCATAGTTTTTTTAGAATCAAAGCTATAGACGAAACGAACCGAAAATAACAGACAGGGCCCAGTTCAGCCACTCTATGGCTTTTATTTTTGTCCATATACAGGATACAATTTTTCGAATAATACCAGTTTGCAGTACTCAACGAGTTCTAATTTAGTTAATCAAAAAGTAATGATTCTAAAAGCAGCTATGGCAGAAGAATCTAGAAACGGCGAAGGCCCGCCATAGGCCCGTTTGACAAGTTTCTCAATTTCGCTGACCGTCATGAATCAAAAACCTTCCAAACGTTTAAAAAGTGTATTTAACCCTCAAATAAGGCACACTTCASAAAATGATAAGGTAGATGACACCTTGTGTAAACGTCGTTCTTGCACTTAAAACTTTTGGTTAAGAAAATATGAACATTTCTTTCCAGATAGGATGGAATTCCAGTAAAAATTTCAAATGCAAAAATCGTACTTTGTATTTTTTTTTCTCGTTGAAACCGTATTCCTTGCAGAAACTCTTTTATTTACATTGTGAATATTTCACAAACTGTCTCAACTTTCCATCTTATCGTTTTCTATTTCCATATCGTCATTTCCTATTCTGTGCTCTTATCGGTTTTCGGAAAATTCCCAAATTTCGCCATTTTCATCTATCTTTGAAGTATATTAATACAACTACTATCTGTCCTGGAAAGGATGTAATTGCTACCTGACTCATAATTTCATTTTTTAAACAAATTTTTGTTACAGGTACTGTTTTGTGATTCTTTTTTCAATCGTCATTTTTAAAATAGTTTTCGAAGAACCGTTCATTGAGTACATGTACTTTGAGATCAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>386 282 219 113</canonical_bands>
                <polymorphic_bands>668 219 113</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGATTCTAAAAGCAGCTATGG</pcr_primer_p1>
		<pcr_primer_p2>CCTATCTGGAAAGAAATGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGATTCTAAAAGCAGCTATGGCAGAAGAATCTAGAAACGGCGAAGGCCCGCCATAGGCCCGTTTGACAAGTTTCTCAATTTCGCTGACCGTCATGAATCAAAAACCTTCCAAACGTTTAAAAAGTGTATTTAACCCTCAAATAAGGCACACTTCAGAAAATGATAAGGTAGATGACACCTTGTGTAAACGTCGTTCTTGCACTTAAAACTTTTGGTTAAGAAAATATGAACATTTCTTTCCAGATAGG</canonical_amplicon>
		<polymorphic_amplicon>ATGATTCTAAAAGCAGCTATGGCAGAAGAATCTAGAAACGGCGAAGGCCCGCCATAGGCCCGTTTGACAAGTTTCTCAATTTCGCTGACCGTCATGAATCAAAAACCTTCCAAACGTTTAAAAAGTGTATTTAACCCTCAAATAAGGCACACTTCASAAAATGATAAGGTAGATGACACCTTGTGTAAACGTCGTTCTTGCACTTAAAACTTTTGGTTAAGAAAATATGAACATTTCTTTCCAGATAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35423</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>412114</contig_pos>
        <strand>+</strand>
        <context>ACTGTTTTGT[A/G]ATTCTTTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTCATAATTTCATTTTTTAAACAAATTTTTGTTACAGGTACTGTTTTGT</left_flank>
        <right_flank>ATTCTTTTTTCAATCGTCATTTTTAAAATAGTTTTCGAAGAACCGTTCAT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGCTGACCGTCATGAATCAAAAACCTTCCAAACGTTTAAAAAGTGTATTTAACCCTCAAATAAGGCACACTTCAGAAAATGATAAGGTAGATGACACCTTGTGTAAACGTCGTTCTTGCACTTAAAACTTTTGGTTAAGAAAATATGAACATTTCTTTCCAGATAGGATGGAATTCCAGTAAAAATTTCAAATGCAAAAATCGTACTTTGTATTTTTTTTTCTCGTTGAAACCGTATTCCTTGCAGAAACTCTTTTATTTACATTGTGAATATTTCACAAACTGTCTCAACTTTCCATCTTATCGTTTTCTATTTCCATATCGTCATTTCCTATTCTGTGCTCTTATCGGTTTTCGGAAAATTCCCAAATTTCGCCATTTTCATCTATCTTTGAAGTATATTAATACAACTACTATCTGTCCTGGAAAGGATGTAATTGCTACCTGACTCATAATTTCATTTTTTAAACAAATTTTTGTTACAGGTACTGTTTTGTGATTCTTTTTTCAATCGTCATTTTTAAAATAGTTTTCGAAGAACCGTTCATTGAGTACATGTACTTTGAGATCAAAAATTGGTTTCGAAAAAAATGGGGGATGAATATAAAAATAAAAAGAATCTATGTAGTAAACAGGTTTAGAGTGCATCGAAAAACCAATTCATTCATAATTTTATCTATTTTTCCCACTGTTCTGTCTCTTCCCTTTCCATATATGTTTATATTTTCTCTTGATTTTTAAAAGTGATATTTGAATAACATGGAGAAATTGTAAGATTTCCAATCCTAATGAAATTATTTAAATTCAAGTTATCCCTTTTTCAGATTTCATTTCGCTGTCCATTTTCTTTTTGGAAATGGTACAATGAGCGGTGAGCCGGTGCCGCTCATCTTTTTGGTGAGATTTTAAAACTACAGTTATGAGAAATATATAAACGTATTTTTCAGTTGATTTTGATTATTTTCAGAAGTCTAGAGCTCGGGTAAAACTTTTAAAGG</canonical>
            <polymorphic>TTTCGCTGACCGTCATGAATCAAAAACCTTCCAAACGTTTAAAAAGTGTATTTAACCCTCAAATAAGGCACACTTCAGAAAATGATAAGGTAGATGACACCTTGTGTAAACGTCGTTCTTGCACTTAAAACTTTTGGTTAAGAAAATATGAACATTTCTTTCCAGATAGGATGGAATTCCAGTAAAAATTTCAAATGCAAAAATCGTACTTTGTATTTTTTTTTCTCGTTGAAACCGTATTCCTTGCAGAAACTCTTTTATTTACATTGTGAATATTTCACAAACTGTCTCAACTTTCCATCTTATCGTTTTCTATTTCCATATCGTCATTTCCTATTCTGTGCTCTTATCGGTTTTCGGAAAATTCCCAAATTTCGCCATTTTCATCTATCTTTGAAGTATATTAATACAACTACTATCTGTCCTGGAAAGGATGTAATTGCTACCTGACTCATAATTTCATTTTTTAAACAAATTTTTGTTACAGGTACTGTTTTGTRATTCTTTTTTCAATCGTCATTTTTAAAATAGTTTTCGAAGAACCGTTCATTGAGTACATGTACTTTGAGATCAAAAATTGGTTTCGAAAAAAATGGGGGATGAATATAAAAATAAAAAGAATCTATGTAGTAAACAGGTTTAGAGTGCATCGAAAAACCAATTCATTCATAATTTTATCTATTTTTCCCACTGTTCTGTCTCTTCCCTTTCCATATATGTTTATATTTTCTCTTGATTTTTAAAAGTGATATTTGAATAACATGGAGAAATTGTAAGATTTCCAATCCTAATGAAATTATTTAAATTCAAGTTATCCCTTTTTCAGATTTCATTTCGCTGTCCATTTTCTTTTTGGAAATGGTACAATGAGCGGTGAGCCGGTGCCGCTCATCTTTTTGGTGAGATTTTAAAACTACAGTTATGAGAAATATATAAACGTATTTTTCAGTTGATTTTGATTATTTTCAGAAGTCTAGAGCTCGGGTAAAACTTTTAAAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>157 148 147 128 98 63 58 48 43 27 22 18 17 9 8 7 2</canonical_bands>
                <polymorphic_bands>304 148 128 98 63 58 48 43 27 22 18 17 9 8 7 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>432 381 119 51 17</canonical_bands>
                <polymorphic_bands>432 381 170 17</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>483 381 119 17</canonical_bands>
                <polymorphic_bands>602 381 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATGTAATTGCTACCTGACTCAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTATGAATGAATTGGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GATGTAATTGCTACCTGACTCATAATTTCATTTTTTAAACAAATTTTTGTTACAGGTACTGTTTTGTGATTCTTTTTTCAATCGTCATTTTTAAAATAGTTTTCGAAGAACCGTTCATTGAGTACATGTACTTTGAGATCAAAAATTGGTTTCGAAAAAAATGGGGGATGAATATAAAAATAAAAAGAATCTATGTAGTAAACAGGTTTAGAGTGCATCGAAAAACCAATTCATTCATAATTT</canonical_amplicon>
		<polymorphic_amplicon>GATGTAATTGCTACCTGACTCATAATTTCATTTTTTAAACAAATTTTTGTTACAGGTACTGTTTTGTRATTCTTTTTTCAATCGTCATTTTTAAAATAGTTTTCGAAGAACCGTTCATTGAGTACATGTACTTTGAGATCAAAAATTGGTTTCGAAAAAAATGGGGGATGAATATAAAAATAAAAAGAATCTATGTAGTAAACAGGTTTAGAGTGCATCGAAAAACCAATTCATTCATAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35424</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>412584</contig_pos>
        <strand></strand>
        <context>ttattttcag[A/G]agtctagagc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATGAGAAATATATAAACGTATTTTTCAGTTGATTTTGATTATTTTCAG</left_flank>
        <right_flank>AGTCTAGAGCTCGGGTAAAACTTTTAAAGGGTGTAAAGCAGACCTAGATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAAATTTTTGTTACAGGTACTGTTTTGTGATTCTTTTTTCAATCGTCATTTTTAAAATAGTTTTCGAAGAACCGTTCATTGAGTACATGTACTTTGAGATCAAAAATTGGTTTCGAAAAAAATGGGGGATGAATATAAAAATAAAAAGAATCTATGTAGTAAACAGGTTTAGAGTGCATCGAAAAACCAATTCATTCATAATTTTATCTATTTTTCCCACTGTTCTGTCTCTTCCCTTTCCATATATGTTTATATTTTCTCTTGATTTTTAAAAGTGATATTTGAATAACATGGAGAAATTGTAAGATTTCCAATCCTAATGAAATTATTTAAATTCAAGTTATCCCTTTTTCAGATTTCATTTCGCTGTCCATTTTCTTTTTGGAAATGGTACAATGAGCGGTGAGCCGGTGCCGCTCATCTTTTTGGTGAGATTTTAAAACTACAGTTATGAGAAATATATAAACGTATTTTTCAGTTGATTTTGATTATTTTCAGAAGTCTAGAGCTCGGGTAAAACTTTTAAAGGGTGTAAAGCAGACCTAGATTGATAGAACTTTTTTGAACATTTTTAGTTTTTCAGCTATTTGCCGATTTTAGAAAGACACCTTTTTTGGCTGATTTTTGTACTGGAAAGTGAAAAAAACAGGTGTCTTTCATTGATCGTCAAATAGCGGAAAAGTAGGAATTTCCAAAAATTGTGTGAATTAAAAGTTTTTGATCTAGGTCTGTTTTACACAATCCAAAATTTTCAAGGTGATCGGAAACTTGCCAGCCGAGCTCCAGAGTCATGAAAATTACCGAAAACCAACTGAAAATATGTAGTTGCATATATTTTTGACTGGTACTGTATTTTGATTTAAACTGTATAAAATTTTTAGAATTGCTCCAGCATATTCATATTCGGCAAAGATGAGAAATACGCCGCATGTCCGATTGAAAACGGTACTGATCCATGTTATTTACTACGAGAAGTACATCGAGCAAAGGAGTTTCGAA</canonical>
            <polymorphic>ACAAATTTTTGTTACAGGTACTGTTTTGTGATTCTTTTTTCAATCGTCATTTTTAAAATAGTTTTCGAAGAACCGTTCATTGAGTACATGTACTTTGAGATCAAAAATTGGTTTCGAAAAAAATGGGGGATGAATATAAAAATAAAAAGAATCTATGTAGTAAACAGGTTTAGAGTGCATCGAAAAACCAATTCATTCATAATTTTATCTATTTTTCCCACTGTTCTGTCTCTTCCCTTTCCATATATGTTTATATTTTCTCTTGATTTTTAAAAGTGATATTTGAATAACATGGAGAAATTGTAAGATTTCCAATCCTAATGAAATTATTTAAATTCAAGTTATCCCTTTTTCAGATTTCATTTCGCTGTCCATTTTCTTTTTGGAAATGGTACAATGAGCGGTGAGCCGGTGCCGCTCATCTTTTTGGTGAGATTTTAAAACTACAGTTATGAGAAATATATAAACGTATTTTTCAGTTGATTTTGATTATTTTCAGRAGTCTAGAGCTCGGGTAAAACTTTTAAAGGGTGTAAAGCAGACCTAGATTGATAGAACTTTTTTGAACATTTTTAGTTTTTCAGCTATTTGCCGATTTTAGAAAGACACCTTTTTTGGCTGATTTTTGTACTGGAAAGTGAAAAAAACAGGTGTCTTTCATTGATCGTCAAATAGCGGAAAAGTAGGAATTTCCAAAAATTGTGTGAATTAAAAGTTTTTGATCTAGGTCTGTTTTACACAATCCAAAATTTTCAAGGTGATCGGAAACTTGCCAGCCGAGCTCCAGAGTCATGAAAATTACCGAAAACCAACTGAAAATATGTAGTTGCATATATTTTTGACTGGTACTGTATTTTGATTTAAACTGTATAAAATTTTTAGAATTGCTCCAGCATATTCATATTCGGCAAAGATGAGAAATACGCCGCATGTCCGATTGAAAACGGTACTGATCCATGTTATTTACTACGAGAAGTACATCGAGCAAAGGAGTTTCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>355 266 171 143 65</canonical_bands>
                <polymorphic_bands>409 355 171 65</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCATCTTTTTGGTGAGATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATATGCTGGAGCAATTCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>482</pcr_amplicon_size>
		<canonical_amplicon>CTCATCTTTTTGGTGAGATTTTAAAACTACAGTTATGAGAAATATATAAACGTATTTTTCAGTTGATTTTGATTATTTTCAGAAGTCTAGAGCTCGGGTAAAACTTTTAAAGGGTGTAAAGCAGACCTAGATTGATAGAACTTTTTTGAACATTTTTAGTTTTTCAGCTATTTGCCGATTTTAGAAAGACACCTTTTTTGGCTGATTTTTGTACTGGAAAGTGAAAAAAACAGGTGTCTTTCATTGATCGTCAAATAGCGGAAAAGTAGGAATTTCCAAAAATTGTGTGAATTAAAAGTTTTTGATCTAGGTCTGTTTTACACAATCCAAAATTTTCAAGGTGATCGGAAACTTGCCAGCCGAGCTCCAGAGTCATGAAAATTACCGAAAACCAACTGAAAATATGTAGTTGCATATATTTTTGACTGGTACTGTATTTTGATTTAAACTGTATAAAATTTTTAGAATTGCTCCAGCATATT</canonical_amplicon>
		<polymorphic_amplicon>CTCATCTTTTTGGTGAGATTTTAAAACTACAGTTATGAGAAATATATAAACGTATTTTTCAGTTGATTTTGATTATTTTCAGRAGTCTAGAGCTCGGGTAAAACTTTTAAAGGGTGTAAAGCAGACCTAGATTGATAGAACTTTTTTGAACATTTTTAGTTTTTCAGCTATTTGCCGATTTTAGAAAGACACCTTTTTTGGCTGATTTTTGTACTGGAAAGTGAAAAAAACAGGTGTCTTTCATTGATCGTCAAATAGCGGAAAAGTAGGAATTTCCAAAAATTGTGTGAATTAAAAGTTTTTGATCTAGGTCTGTTTTACACAATCCAAAATTTTCAAGGTGATCGGAAACTTGCCAGCCGAGCTCCAGAGTCATGAAAATTACCGAAAACCAACTGAAAATATGTAGTTGCATATATTTTTGACTGGTACTGTATTTTGATTTAAACTGTATAAAATTTTTAGAATTGCTCCAGCATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35425</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>418234</contig_pos>
        <strand></strand>
        <context>attttaaatt[T/A]aaaaaaaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCAGTGGAAGGTTAACAATGCGTTTTTGCCTAAACCTAGGATTTTAAATT</left_flank>
        <right_flank>AAAAAAAAAAACAAATTGAAACAAATTTTCACCGAAAAATGTGAAAATCT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAGAACGAGTAGAGACTTATCAATCTGTTCCAATTTTTCACATCTTGTTGCTCTTCTGATCTTTTTTATTTATTTTTTTCAACAACATATGTTTAGAGCTTTCTTTCTTTTTCATGTTGATACATTAGATTATTTATTGCTTAATTTAATAATTGAATGAAACCTTTTTGCTTTATTTGATTTTATAACTACATCAAGGTCAACAGTCCCTTTTGATTCCTTTTTGAAGTTCCCTCCAGGGGTGGGCGAGAATGGGCGAAAAACCTTCACGTTTTGCAAATTTTCCTCTCTCAAAATGTAAAGTGTTGAGTGAAGGCGCACACGCAATTTTGTCGATTGGCCTCGACACGAAAAACTAAACTTCTAATATTTCACACAATTTTGGAATTCCGAGGATGATTTTTGAATTGGGATACTTTTTGAAATTGGCGCCAAAAGTCAGGTGTCTCAGTGGAAGGTTAACAATGCGTTTTTGCCTAAACCTAGGATTTTAAATTTAAAAAAAAAAACAAATTGAAACAAATTTTCACCGAAAAATGTGAAAATCTTACTGATTTTCGCTAATTTCAGTACTTTTTTGACTGGAATTTTTCACATTTTTTGAAAAAATTATAGGCCTTCCCTTTTATTGGGCTATCCGAAAAATGGTGCCAAACTCAAAAAATTTGCATGACCAGAATTCGAATTCAAAATTTAACACAAAAATGTCGCAGGGAATAGAGAAAATTATTTTTTCCTCATAGGTATTCAGATTTTTTGATGATTTTTTAAAATTCTGAAAATTATTCTATTCTTCCTAAAATGTTGTGTTCTCTTGAAAAATCTGTAGTTTTTAACTGTATAGCATGTCTTCGTTGAAATATATCAATTGCAATTTCAATTTTTTTTGAATGTGCAAATTATTGCTGTTTGAAAAAAATGAAGGTTAGAGAGTATTTTTTGTTTTTTTTCATATTCCTCTTCTAGTTTTGATGGGAATAAATTCGAATACTGTGGAT</canonical>
            <polymorphic>GAAAGAACGAGTAGAGACTTATCAATCTGTTCCAATTTTTCACATCTTGTTGCTCTTCTGATCTTTTTTATTTATTTTTTTCAACAACATATGTTTAGAGCTTTCTTTCTTTTTCATGTTGATACATTAGATTATTTATTGCTTAATTTAATAATTGAATGAAACCTTTTTGCTTTATTTGATTTTATAACTACATCAAGGTCAACAGTCCCTTTTGATTCCTTTTTGAAGTTCCCTCCAGGGGTGGGCGAGAATGGGCGAAAAACCTTCACGTTTTGCAAATTTTCCTCTCTCAAAATGTAAAGTGTTGAGTGAAGGCGCACACGCAATTTTGTCGATTGGCCTCGACACGAAAAACTAAACTTCTAATATTTCACACAATTTTGGAATTCCGAGGATGATTTTTGAATTGGGATACTTTTTGAAATTGGCGCCAAAAGTCAGGTGTCTCAGTGGAAGGTTAACAATGCGTTTTTGCCTAAACCTAGGATTTTAAATTWAAAAAAAAAAACAAATTGAAACAAATTTTCACCGAAAAATGTGAAAATCTTACTGATTTTCGCTAATTTCAGTACTTTTTTGACTGGAATTTTTCACATTTTTTGAAAAAATTATAGGCCTTCCCTTTTATTGGGCTATCCGAAAAATGGTGCCAAACTCAAAAAATTTGCATGACCAGAATTCGAATTCAAAATTTAACACAAAAATGTCGCAGGGAATAGAGAAAATTATTTTTTCCTCATAGGTATTCAGATTTTTTGATGATTTTTTAAAATTCTGAAAATTATTCTATTCTTCCTAAAATGTTGTGTTCTCTTGAAAAATCTGTAGTTTTTAACTGTATAGCATGTCTTCGTTGAAATATATCAATTGCAATTTCAATTTTTTTTGAATGTGCAAATTATTGCTGTTTGAAAAAAATGAAGGTTAGAGAGTATTTTTTGTTTTTTTTCATATTCCTCTTCTAGTTTTGATGGGAATAAATTCGAATACTGTGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>280 209 108 107 81 77 64 28 18 15 7 6</canonical_bands>
                <polymorphic_bands>280 209 136 107 81 77 64 18 15 7 6</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>494 271 229 6</canonical_bands>
                <polymorphic_bands>494 277 229</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>313 197 165 143 74 65 32 6 5</canonical_bands>
                <polymorphic_bands>313 203 165 143 74 65 32 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGATTCCTTTTTGAAGTTCC</pcr_primer_p1>
		<pcr_primer_p2>GACATTTTTGTGTTAAATTTTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>497</pcr_amplicon_size>
		<canonical_amplicon>TTGATTCCTTTTTGAAGTTCCCTCCAGGGGTGGGCGAGAATGGGCGAAAAACCTTCACGTTTTGCAAATTTTCCTCTCTCAAAATGTAAAGTGTTGAGTGAAGGCGCACACGCAATTTTGTCGATTGGCCTCGACACGAAAAACTAAACTTCTAATATTTCACACAATTTTGGAATTCCGAGGATGATTTTTGAATTGGGATACTTTTTGAAATTGGCGCCAAAAGTCAGGTGTCTCAGTGGAAGGTTAACAATGCGTTTTTGCCTAAACCTAGGATTTTAAATTTAAAAAAAAAAACAAATTGAAACAAATTTTCACCGAAAAATGTGAAAATCTTACTGATTTTCGCTAATTTCAGTACTTTTTTGACTGGAATTTTTCACATTTTTTGAAAAAATTATAGGCCTTCCCTTTTATTGGGCTATCCGAAAAATGGTGCCAAACTCAAAAAATTTGCATGACCAGAATTCGAATTCAAAATTTAACACAAAAATGTC</canonical_amplicon>
		<polymorphic_amplicon>TTGATTCCTTTTTGAAGTTCCCTCCAGGGGTGGGCGAGAATGGGCGAAAAACCTTCACGTTTTGCAAATTTTCCTCTCTCAAAATGTAAAGTGTTGAGTGAAGGCGCACACGCAATTTTGTCGATTGGCCTCGACACGAAAAACTAAACTTCTAATATTTCACACAATTTTGGAATTCCGAGGATGATTTTTGAATTGGGATACTTTTTGAAATTGGCGCCAAAAGTCAGGTGTCTCAGTGGAAGGTTAACAATGCGTTTTTGCCTAAACCTAGGATTTTAAATTWAAAAAAAAAAACAAATTGAAACAAATTTTCACCGAAAAATGTGAAAATCTTACTGATTTTCGCTAATTTCAGTACTTTTTTGACTGGAATTTTTCACATTTTTTGAAAAAATTATAGGCCTTCCCTTTTATTGGGCTATCCGAAAAATGGTGCCAAACTCAAAAAATTTGCATGACCAGAATTCGAATTCAAAATTTAACACAAAAATGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35426</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>418369</contig_pos>
        <strand></strand>
        <context>cttttattgg[G/A]ctatccgaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGGAATTTTTCACATTTTTTGAAAAAATTATAGGCCTTCCCTTTTATTGG</left_flank>
        <right_flank>CTATCCGAAAAATGGTGCCAAACTCAAAAAATTTGCATGACCAGAATTCG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATTGCTTAATTTAATAATTGAATGAAACCTTTTTGCTTTATTTGATTTTATAACTACATCAAGGTCAACAGTCCCTTTTGATTCCTTTTTGAAGTTCCCTCCAGGGGTGGGCGAGAATGGGCGAAAAACCTTCACGTTTTGCAAATTTTCCTCTCTCAAAATGTAAAGTGTTGAGTGAAGGCGCACACGCAATTTTGTCGATTGGCCTCGACACGAAAAACTAAACTTCTAATATTTCACACAATTTTGGAATTCCGAGGATGATTTTTGAATTGGGATACTTTTTGAAATTGGCGCCAAAAGTCAGGTGTCTCAGTGGAAGGTTAACAATGCGTTTTTGCCTAAACCTAGGATTTTAAATTTAAAAAAAAAAACAAATTGAAACAAATTTTCACCGAAAAATGTGAAAATCTTACTGATTTTCGCTAATTTCAGTACTTTTTTGACTGGAATTTTTCACATTTTTTGAAAAAATTATAGGCCTTCCCTTTTATTGGGCTATCCGAAAAATGGTGCCAAACTCAAAAAATTTGCATGACCAGAATTCGAATTCAAAATTTAACACAAAAATGTCGCAGGGAATAGAGAAAATTATTTTTTCCTCATAGGTATTCAGATTTTTTGATGATTTTTTAAAATTCTGAAAATTATTCTATTCTTCCTAAAATGTTGTGTTCTCTTGAAAAATCTGTAGTTTTTAACTGTATAGCATGTCTTCGTTGAAATATATCAATTGCAATTTCAATTTTTTTTGAATGTGCAAATTATTGCTGTTTGAAAAAAATGAAGGTTAGAGAGTATTTTTTGTTTTTTTTCATATTCCTCTTCTAGTTTTGATGGGAATAAATTCGAATACTGTGGATCCACGTTCCTTTTTTATCTCCCTCATTTTTTTTTAATGTCACGGAAAAATATATTTAATATTGTTGTCCTGAGAATCAGAAAACAGAAACTAGGATACAGATACACGTGAAGAAAACCTCCCCCATCAAAAAAAT</canonical>
            <polymorphic>TTATTGCTTAATTTAATAATTGAATGAAACCTTTTTGCTTTATTTGATTTTATAACTACATCAAGGTCAACAGTCCCTTTTGATTCCTTTTTGAAGTTCCCTCCAGGGGTGGGCGAGAATGGGCGAAAAACCTTCACGTTTTGCAAATTTTCCTCTCTCAAAATGTAAAGTGTTGAGTGAAGGCGCACACGCAATTTTGTCGATTGGCCTCGACACGAAAAACTAAACTTCTAATATTTCACACAATTTTGGAATTCCGAGGATGATTTTTGAATTGGGATACTTTTTGAAATTGGCGCCAAAAGTCAGGTGTCTCAGTGGAAGGTTAACAATGCGTTTTTGCCTAAACCTAGGATTTTAAATTTAAAAAAAAAAACAAATTGAAACAAATTTTCACCGAAAAATGTGAAAATCTTACTGATTTTCGCTAATTTCAGTACTTTTTTGACTGGAATTTTTCACATTTTTTGAAAAAATTATAGGCCTTCCCTTTTATTGGRCTATCCGAAAAATGGTGCCAAACTCAAAAAATTTGCATGACCAGAATTCGAATTCAAAATTTAACACAAAAATGTCGCAGGGAATAGAGAAAATTATTTTTTCCTCATAGGTATTCAGATTTTTTGATGATTTTTTAAAATTCTGAAAATTATTCTATTCTTCCTAAAATGTTGTGTTCTCTTGAAAAATCTGTAGTTTTTAACTGTATAGCATGTCTTCGTTGAAATATATCAATTGCAATTTCAATTTTTTTTGAATGTGCAAATTATTGCTGTTTGAAAAAAATGAAGGTTAGAGAGTATTTTTTGTTTTTTTTCATATTCCTCTTCTAGTTTTGATGGGAATAAATTCGAATACTGTGGATCCACGTTCCTTTTTTATCTCCCTCATTTTTTTTTAATGTCACGGAAAAATATATTTAATATTGTTGTCCTGAGAATCAGAAAACAGAAACTAGGATACAGATACACGTGAAGAAAACCTCCCCCATCAAAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>500 276 207 17</canonical_bands>
                <polymorphic_bands>517 276 207</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGATTCCTTTTTGAAGTTCC</pcr_primer_p1>
		<pcr_primer_p2>GACATTTTTGTGTTAAATTTTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>497</pcr_amplicon_size>
		<canonical_amplicon>TTGATTCCTTTTTGAAGTTCCCTCCAGGGGTGGGCGAGAATGGGCGAAAAACCTTCACGTTTTGCAAATTTTCCTCTCTCAAAATGTAAAGTGTTGAGTGAAGGCGCACACGCAATTTTGTCGATTGGCCTCGACACGAAAAACTAAACTTCTAATATTTCACACAATTTTGGAATTCCGAGGATGATTTTTGAATTGGGATACTTTTTGAAATTGGCGCCAAAAGTCAGGTGTCTCAGTGGAAGGTTAACAATGCGTTTTTGCCTAAACCTAGGATTTTAAATTTAAAAAAAAAAACAAATTGAAACAAATTTTCACCGAAAAATGTGAAAATCTTACTGATTTTCGCTAATTTCAGTACTTTTTTGACTGGAATTTTTCACATTTTTTGAAAAAATTATAGGCCTTCCCTTTTATTGGGCTATCCGAAAAATGGTGCCAAACTCAAAAAATTTGCATGACCAGAATTCGAATTCAAAATTTAACACAAAAATGTC</canonical_amplicon>
		<polymorphic_amplicon>TTGATTCCTTTTTGAAGTTCCCTCCAGGGGTGGGCGAGAATGGGCGAAAAACCTTCACGTTTTGCAAATTTTCCTCTCTCAAAATGTAAAGTGTTGAGTGAAGGCGCACACGCAATTTTGTCGATTGGCCTCGACACGAAAAACTAAACTTCTAATATTTCACACAATTTTGGAATTCCGAGGATGATTTTTGAATTGGGATACTTTTTGAAATTGGCGCCAAAAGTCAGGTGTCTCAGTGGAAGGTTAACAATGCGTTTTTGCCTAAACCTAGGATTTTAAATTTAAAAAAAAAAACAAATTGAAACAAATTTTCACCGAAAAATGTGAAAATCTTACTGATTTTCGCTAATTTCAGTACTTTTTTGACTGGAATTTTTCACATTTTTTGAAAAAATTATAGGCCTTCCCTTTTATTGGRCTATCCGAAAAATGGTGCCAAACTCAAAAAATTTGCATGACCAGAATTCGAATTCAAAATTTAACACAAAAATGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35427</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>436380</contig_pos>
        <strand>+</strand>
        <context>CGATTAGAAA[A/C]AAATCCACCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTATTCTTTTTAGTTTGGTAAGTCATCCTTCTGTACCACTCGATTAGAAA</left_flank>
        <right_flank>AAATCCACCAAAAACCAATCTCTGCACCATCACCCATTTTCATTCCATCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCAGATAACTTTTAGGTAGGCAAACTTTGATAATTTTAAAGTTGACGATGATTTGACCAATGTATTTTTCTAATTCTGACCAAGCCTTCTGGCCCGATGTGGCTACTGTCGTTTCTGCTAAGTCAATTGCATCAAAATTCGGAAAACCTCTTTGGGACTTTTCTGTTTCTCTCGAAAAAAATACGAAAAGAATCAAAATGCTAAAATCCTTCCTGATTAGAGTTTTATCGGGACTTTCTATCATTACAAGTTTTATATTTGGATATTCTCACAGGAAGTACTTAAACTAAAAGACTAGCACATTTCTAGGTTATGCCGTCTACACGGAATAGGAAAGTCCGGTGTTTTTCTGTTTACTCAACGTTTATAATGAATTATTTCATAGCATTGCCTCACGAGATTTCTTCTTGTAACTTCTATTTTTCCTGAAAATATGTCTCTGGAAATGCTATTCTTTTTAGTTTGGTAAGTCATCCTTCTGTACCACTCGATTAGAAAAAAATCCACCAAAAACCAATCTCTGCACCATCACCCATTTTCATTCCATCGAAAAATCGGAAATTCCATTTTTTCTCTTCCATTTGGGATTGGATTTTGAATCCGTTTCCGGTCACATCTCCATCACATTCTAGCTTTCAGACTCTCAAGTTCATCTTTTTGTTTTTCTTCCAAAAACTTTTTTTTCCATTTCCGCTTGGAAGGCTCACAAAAGTTTTATGATCTCATAAAATCCTTTTGTTTTCTGGTTTATTCAACTTGAAAAAAATTTGAAATCGGTAAGTGGGATTACTGTGGCTTTATGGGGGTCGTTATTCATTGGGAGCAGGGGAGGATCTTCCTGCTACAGTAACCAACAGAAGTTGTTCTTTGGGATAGAATGTTTTGAGCACGTCCTGGCTTCTAGTATATGAAAATCGAATGAAGTTAAAAGGGCACACCGAACAAAATGTTTTTGGTAATTTTCTTGGACAAAAACTGACCCCGCTTGCATTAAAAAAA</canonical>
            <polymorphic>CCCAGATAACTTTTAGGTAGGCAAACTTTGATAATTTTAAAGTTGACGATGATTTGACCAATGTATTTTTCTAATTCTGACCAAGCCTTCTGGCCCGATGTGGCTACTGTCGTTTCTGCTAAGTCAATTGCATCAAAATTCGGAAAACCTCTTTGGGACTTTTCTGTTTCTCTCGAAAAAAATACGAAAAGAATCAAAATGCTAAAATCCTTCCTGATTAGAGTTTTATCGGGACTTTCTATCATTACAAGTTTTATATTTGGATATTCTCACAGGAAGTACTTAAACTAAAAGACTAGCACATTTCTAGGTTATGCCGTCTACACGGAATAGGAAAGTCCGGTGTTTTTCTGTTTACTCAACGTTTATAATGAATTATTTCATAGCATTGCCTCACGAGATTTCTTCTTGTAACTTCTATTTTTCCTGAAAATATGTCTCTGGAAATGCTATTCTTTTTAGTTTGGTAAGTCATCCTTCTGTACCACTCGATTAGAAAMAAATCCACCAAAAACCAATCTCTGCACCATCACCCATTTTCATTCCATCGAAAAATCGGAAATTCCATTTTTTCTCTTCCATTTGGGATTGGATTTTGAATCCGTTTCCGGTCACATCTCCATCACATTCTAGCTTTCAGACTCTCAAGTTCATCTTTTTGTTTTTCTTCCAAAAACTTTTTTTTCCATTTCCGCTTGGAAGGCTCACAAAAGTTTTATGATCTCATAAAATCCTTTTGTTTTCTGGTTTATTCAACTTGAAAAAAATTTGAAATCGGTAAGTGGGATTACTGTGGCTTTATGGGGGTCGTTATTCATTGGGAGCAGGGGAGGATCTTCCTGCTACAGTAACCAACAGAAGTTGTTCTTTGGGATAGAATGTTTTGAGCACGTCCTGGCTTCTAGTATATGAAAATCGAATGAAGTTAAAAGGGCACACCGAACAAAATGTTTTTGGTAATTTTCTTGGACAAAAACTGACCCCGCTTGCATTAAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCACGAGATTTCTTCTTGTAACT</pcr_primer_p1>
		<pcr_primer_p2>AGTCTGAAAGCTAGAATGTGATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCACGAGATTTCTTCTTGTAACTTCTATTTTTCCTGAAAATATGTCTCTGGAAATGCTATTCTTTTTAGTTTGGTAAGTCATCCTTCTGTACCACTCGATTAGAAAAAAATCCACCAAAAACCAATCTCTGCACCATCACCCATTTTCATTCCATCGAAAAATCGGAAATTCCATTTTTTCTCTTCCATTTGGGATTGGATTTTGAATCCGTTTCCGGTCACATCTCCATCACATTCTAGCTTTCAGACT</canonical_amplicon>
		<polymorphic_amplicon>TCACGAGATTTCTTCTTGTAACTTCTATTTTTCCTGAAAATATGTCTCTGGAAATGCTATTCTTTTTAGTTTGGTAAGTCATCCTTCTGTACCACTCGATTAGAAAMAAATCCACCAAAAACCAATCTCTGCACCATCACCCATTTTCATTCCATCGAAAAATCGGAAATTCCATTTTTTCTCTTCCATTTGGGATTGGATTTTGAATCCGTTTCCGGTCACATCTCCATCACATTCTAGCTTTCAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35428</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>518896</contig_pos>
        <strand>+</strand>
        <context>TTTCAGACCA[A/C]TCTTCTCGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGTGTTAAATTTTGGTTACCTATTTGAGATTTCCTTATATTTCAGACCA</left_flank>
        <right_flank>TCTTCTCGAATTCAACGGTAAATCAGTACAGACAAAGGCTCTCGGACGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTGTGATGGAATAGTTCGTCTCTCTGACATTTCGGATGTTCCGAATTACGATGAGCCTGGAGCTGTTATTTATGAGCTCGACGCAATAATTAGTTTGATCGGAAATGGACAACAGGACGTTGTTTGGACCCATCCTGTAACATTACTCAGAGAAAGTCCAGTTGCTTCCACTGCTTGGACTTTAATCAATGAGCAACTAGTCAGCAGGCTACACGACCACGAAGCGAGACATTTGGATGCGAGATGGAAACTGCCTGCGTTCATTGGCTATAGACAAAAAGGTTATGAAGTGGCAATCACAGAAAGAAATGTTTCTGATGAGCTGTTTTTTGCTGAGAATAATGTTGCTCTTTGTCTCAATGATTCGGCAGCCGTCAAGACGATTGATGAGCTTCCAAAGAAAGGTGATCTGGTCGGATTAGATGCTGAATTCATTAGAATCAAGGCATGTGTTAAATTTTGGTTACCTATTTGAGATTTCCTTATATTTCAGACCAATCTTCTCGAATTCAACGGTAAATCAGTACAGACAAAGGCTCTCGGACGTGCGTCATGTCTAGACGTAACAGGAGAAAAGATCATATTTGATGATCATATCAAGCTGGATGAAGATGTGGAAGTAGTTGATTACCTTACAAAATTCAGTGGCATCGTGGAATCCGATTTATCCCCACAGACGTCGGATAAGTACCTAACCACACACAAACGTCTGATGCTTCGAATGCATGTATTGATTCAGAGAGGAGTAGTTTTCGTAGGACATGCTGTTCATAACGATTTCGCTGTCATAAATGTTCATGTAAGCAGACGTCTCAGATGGTCTCAATAATTTAAATGTTCAGATCGCCGAACCACAAATCATCGACACTGTTAATTTATGGCGTCTCGGTGCTCAAAGGATGCTTTCATTGCAGTTTTTGGTCAGAGAGGTTCTAGGTGAGCTAGTATGTTTCTTGTCATCACACTAATGTGATCTAAAAATCAAAACCTGGGTGTAA</canonical>
            <polymorphic>GTTTGTGATGGAATAGTTCGTCTCTCTGACATTTCGGATGTTCCGAATTACGATGAGCCTGGAGCTGTTATTTATGAGCTCGACGCAATAATTAGTTTGATCGGAAATGGACAACAGGACGTTGTTTGGACCCATCCTGTAACATTACTCAGAGAAAGTCCAGTTGCTTCCACTGCTTGGACTTTAATCAATGAGCAACTAGTCAGCAGGCTACACGACCACGAAGCGAGACATTTGGATGCGAGATGGAAACTGCCTGCGTTCATTGGCTATAGACAAAAAGGTTATGAAGTGGCAATCACAGAAAGAAATGTTTCTGATGAGCTGTTTTTTGCTGAGAATAATGTTGCTCTTTGTCTCAATGATTCGGCAGCCGTCAAGACGATTGATGAGCTTCCAAAGAAAGGTGATCTGGTCGGATTAGATGCTGAATTCATTAGAATCAAGGCATGTGTTAAATTTTGGTTACCTATTTGAGATTTCCTTATATTTCAGACCAMTCTTCTCGAATTCAACGGTAAATCAGTACAGACAAAGGCTCTCGGACGTGCGTCATGTCTAGACGTAACAGGAGAAAAGATCATATTTGATGATCATATCAAGCTGGATGAAGATGTGGAAGTAGTTGATTACCTTACAAAATTCAGTGGCATCGTGGAATCCGATTTATCCCCACAGACGTCGGATAAGTACCTAACCACACACAAACGTCTGATGCTTCGAATGCATGTATTGATTCAGAGAGGAGTAGTTTTCGTAGGACATGCTGTTCATAACGATTTCGCTGTCATAAATGTTCATGTAAGCAGACGTCTCAGATGGTCTCAATAATTTAAATGTTCAGATCGCCGAACCACAAATCATCGACACTGTTAATTTATGGCGTCTCGGTGCTCAAAGGATGCTTTCATTGCAGTTTTTGGTCAGAGAGGTTCTAGGTGAGCTAGTATGTTTCTTGTCATCACACTAATGTGATCTAAAAATCAAAACCTGGGTGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAATGTTGCTCTTTGTCTCAAT</pcr_primer_p1>
		<pcr_primer_p2>TCAAATATGATCTTTTCTCCTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAATGTTGCTCTTTGTCTCAATGATTCGGCAGCCGTCAAGACGATTGATGAGCTTCCAAAGAAAGGTGATCTGGTCGGATTAGATGCTGAATTCATTAGAATCAAGGCATGTGTTAAATTTTGGTTACCTATTTGAGATTTCCTTATATTTCAGACCAATCTTCTCGAATTCAACGGTAAATCAGTACAGACAAAGGCTCTCGGACGTGCGTCATGTCTAGACGTAACAGGAGAAAAGATCATATTTGA</canonical_amplicon>
		<polymorphic_amplicon>ATAATGTTGCTCTTTGTCTCAATGATTCGGCAGCCGTCAAGACGATTGATGAGCTTCCAAAGAAAGGTGATCTGGTCGGATTAGATGCTGAATTCATTAGAATCAAGGCATGTGTTAAATTTTGGTTACCTATTTGAGATTTCCTTATATTTCAGACCAMTCTTCTCGAATTCAACGGTAAATCAGTACAGACAAAGGCTCTCGGACGTGCGTCATGTCTAGACGTAACAGGAGAAAAGATCATATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35429</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>521138</contig_pos>
        <strand>+</strand>
        <context>GAAAAAGCGG[G/T]GTACTTTCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATACCGTACCTTCGGATGGTTCTGGAAGTATTATCATGTGAAAAAGCGG</left_flank>
        <right_flank>GTACTTTCGTCCGAGAAATCGTCGAGACACTCGCCCATCATTTCTGGCTT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTGTACGATTCCGCGTTATTTCCGTCTAGTTTATACTACTATTTGCTGACCTTGAACATGTGGACGGAGAGTATCTTCTTTTTTGTTTTCTGAACGTATTCATTAAATTAGAGTACAAAAAATTGTAGTCACACCGTTCTCTTCTCGGGCGCTCATCTGACAATATCCAAGAACTTGAACATGAATTGGCGGACATGTTTTCCTAGTCTTCTTGAGTCACATTCGCGTTAGATTTTGAATCAGAGCTCACGTTCATAGCTGCTGACAGGTCTAATAGTAAGCCTGTGGTGTTCTTTGAAAGATCAACAGAACATTCTGGGGATGGAGAGAACGGAATCGGTGACAACGACATGGATCTTCTCGCCAATACAGAGTTCTGGTTGATCGGAGAAGAATCTCTTGCCGATACGAATCTGAATGGACATATTGTTAATTCAATATGGAAACGATACCGTACCTTCGGATGGTTCTGGAAGTATTATCATGTGAAAAAGCGGTGTACTTTCGTCCGAGAAATCGTCGAGACACTCGCCCATCATTTCTGGCTTTAGTGATAGCTTTTCTGCTAAGCTCGCTGATGTTTCTCTCAAGTTGATAATAGAACTTTTTTACTTTTCCTTGTGACAAATGCGCTCCGACCGAGATCCTAAAAGAGGAAGTAAATGTTTATTGATGATACTCTCAGCTTACAAGTGAATGCAAACTACAGAAGCTTTCGTTCTCGTATTGAATTTCGAATCCAGTGTCATAATCATTTCCGAAATGATCATATTCTTCTCGTTCTTGATCTAACATAGAGAAATTTGCGTTTTGTAAAGTTTCGTACTCTTTTTGTCCATAATCATCATCATCTAGCCATCTGTCATCCATTTCAAGCTCTTTGTAGAATTTTAAAATTCTATCTGTAAACTTTCTTCTGAATAAGAAAAAGGAAGAAGCCGAAACTTAAGAAAAAGCAAAAAAAACACAATAATTTGAAAAACGAAATAAGAACTAAC</canonical>
            <polymorphic>CATTGTACGATTCCGCGTTATTTCCGTCTAGTTTATACTACTATTTGCTGACCTTGAACATGTGGACGGAGAGTATCTTCTTTTTTGTTTTCTGAACGTATTCATTAAATTAGAGTACAAAAAATTGTAGTCACACCGTTCTCTTCTCGGGCGCTCATCTGACAATATCCAAGAACTTGAACATGAATTGGCGGACATGTTTTCCTAGTCTTCTTGAGTCACATTCGCGTTAGATTTTGAATCAGAGCTCACGTTCATAGCTGCTGACAGGTCTAATAGTAAGCCTGTGGTGTTCTTTGAAAGATCAACAGAACATTCTGGGGATGGAGAGAACGGAATCGGTGACAACGACATGGATCTTCTCGCCAATACAGAGTTCTGGTTGATCGGAGAAGAATCTCTTGCCGATACGAATCTGAATGGACATATTGTTAATTCAATATGGAAACGATACCGTACCTTCGGATGGTTCTGGAAGTATTATCATGTGAAAAAGCGGKGTACTTTCGTCCGAGAAATCGTCGAGACACTCGCCCATCATTTCTGGCTTTAGTGATAGCTTTTCTGCTAAGCTCGCTGATGTTTCTCTCAAGTTGATAATAGAACTTTTTTACTTTTCCTTGTGACAAATGCGCTCCGACCGAGATCCTAAAAGAGGAAGTAAATGTTTATTGATGATACTCTCAGCTTACAAGTGAATGCAAACTACAGAAGCTTTCGTTCTCGTATTGAATTTCGAATCCAGTGTCATAATCATTTCCGAAATGATCATATTCTTCTCGTTCTTGATCTAACATAGAGAAATTTGCGTTTTGTAAAGTTTCGTACTCTTTTTGTCCATAATCATCATCATCTAGCCATCTGTCATCCATTTCAAGCTCTTTGTAGAATTTTAAAATTCTATCTGTAAACTTTCTTCTGAATAAGAAAAAGGAAGAAGCCGAAACTTAAGAAAAAGCAAAAAAAACACAATAATTTGAAAAACGAAATAAGAACTAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>222 146 86 72 70 69 64 52 50 38 31 30 28 26 11 3 2</canonical_bands>
                <polymorphic_bands>222 146 86 72 70 69 64 52 50 39 38 31 30 26 3 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>437 408 91 64</canonical_bands>
                <polymorphic_bands>845 91 64</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 386 114</canonical_bands>
                <polymorphic_bands>886 114</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTAATTCAATATGGAAACGAT</pcr_primer_p1>
		<pcr_primer_p2>TCATCAATAAACATTTACTTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTTAATTCAATATGGAAACGATACCGTACCTTCGGATGGTTCTGGAAGTATTATCATGTGAAAAAGCGGTGTACTTTCGTCCGAGAAATCGTCGAGACACTCGCCCATCATTTCTGGCTTTAGTGATAGCTTTTCTGCTAAGCTCGCTGATGTTTCTCTCAAGTTGATAATAGAACTTTTTTACTTTTCCTTGTGACAAATGCGCTCCGACCGAGATCCTAAAAGAGGAAGTAAATGTTTATTGATGA</canonical_amplicon>
		<polymorphic_amplicon>TGTTAATTCAATATGGAAACGATACCGTACCTTCGGATGGTTCTGGAAGTATTATCATGTGAAAAAGCGGKGTACTTTCGTCCGAGAAATCGTCGAGACACTCGCCCATCATTTCTGGCTTTAGTGATAGCTTTTCTGCTAAGCTCGCTGATGTTTCTCTCAAGTTGATAATAGAACTTTTTTACTTTTCCTTGTGACAAATGCGCTCCGACCGAGATCCTAAAAGAGGAAGTAAATGTTTATTGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35430</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>521280</contig_pos>
        <strand>+</strand>
        <context>GCGCTCCGAC[C/G]GAGATCCTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGTTGATAATAGAACTTTTTTACTTTTCCTTGTGACAAATGCGCTCCGAC</left_flank>
        <right_flank>GAGATCCTAAAAGAGGAAGTAAATGTTTATTGATGATACTCTCAGCTTAC</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCTCGGGCGCTCATCTGACAATATCCAAGAACTTGAACATGAATTGGCGGACATGTTTTCCTAGTCTTCTTGAGTCACATTCGCGTTAGATTTTGAATCAGAGCTCACGTTCATAGCTGCTGACAGGTCTAATAGTAAGCCTGTGGTGTTCTTTGAAAGATCAACAGAACATTCTGGGGATGGAGAGAACGGAATCGGTGACAACGACATGGATCTTCTCGCCAATACAGAGTTCTGGTTGATCGGAGAAGAATCTCTTGCCGATACGAATCTGAATGGACATATTGTTAATTCAATATGGAAACGATACCGTACCTTCGGATGGTTCTGGAAGTATTATCATGTGAAAAAGCGGTGTACTTTCGTCCGAGAAATCGTCGAGACACTCGCCCATCATTTCTGGCTTTAGTGATAGCTTTTCTGCTAAGCTCGCTGATGTTTCTCTCAAGTTGATAATAGAACTTTTTTACTTTTCCTTGTGACAAATGCGCTCCGACCGAGATCCTAAAAGAGGAAGTAAATGTTTATTGATGATACTCTCAGCTTACAAGTGAATGCAAACTACAGAAGCTTTCGTTCTCGTATTGAATTTCGAATCCAGTGTCATAATCATTTCCGAAATGATCATATTCTTCTCGTTCTTGATCTAACATAGAGAAATTTGCGTTTTGTAAAGTTTCGTACTCTTTTTGTCCATAATCATCATCATCTAGCCATCTGTCATCCATTTCAAGCTCTTTGTAGAATTTTAAAATTCTATCTGTAAACTTTCTTCTGAATAAGAAAAAGGAAGAAGCCGAAACTTAAGAAAAAGCAAAAAAAACACAATAATTTGAAAAACGAAATAAGAACTAACAAGATTGTGAAGAAAATCCTTTCAGAACAAAAAAACAAAAATTTTGTGCCCCCTCATCAAAAATTTGCGCCCCCTCATCAAAAATTTGCGCCCCCTCATCAAAAATTTGTGCCCCCTAAGCATATCTCGTTTTGCAGCTAAG</canonical>
            <polymorphic>CTTCTCGGGCGCTCATCTGACAATATCCAAGAACTTGAACATGAATTGGCGGACATGTTTTCCTAGTCTTCTTGAGTCACATTCGCGTTAGATTTTGAATCAGAGCTCACGTTCATAGCTGCTGACAGGTCTAATAGTAAGCCTGTGGTGTTCTTTGAAAGATCAACAGAACATTCTGGGGATGGAGAGAACGGAATCGGTGACAACGACATGGATCTTCTCGCCAATACAGAGTTCTGGTTGATCGGAGAAGAATCTCTTGCCGATACGAATCTGAATGGACATATTGTTAATTCAATATGGAAACGATACCGTACCTTCGGATGGTTCTGGAAGTATTATCATGTGAAAAAGCGGTGTACTTTCGTCCGAGAAATCGTCGAGACACTCGCCCATCATTTCTGGCTTTAGTGATAGCTTTTCTGCTAAGCTCGCTGATGTTTCTCTCAAGTTGATAATAGAACTTTTTTACTTTTCCTTGTGACAAATGCGCTCCGACSGAGATCCTAAAAGAGGAAGTAAATGTTTATTGATGATACTCTCAGCTTACAAGTGAATGCAAACTACAGAAGCTTTCGTTCTCGTATTGAATTTCGAATCCAGTGTCATAATCATTTCCGAAATGATCATATTCTTCTCGTTCTTGATCTAACATAGAGAAATTTGCGTTTTGTAAAGTTTCGTACTCTTTTTGTCCATAATCATCATCATCTAGCCATCTGTCATCCATTTCAAGCTCTTTGTAGAATTTTAAAATTCTATCTGTAAACTTTCTTCTGAATAAGAAAAAGGAAGAAGCCGAAACTTAAGAAAAAGCAAAAAAAACACAATAATTTGAAAAACGAAATAAGAACTAACAAGATTGTGAAGAAAATCCTTTCAGAACAAAAAAACAAAAATTTTGTGCCCCCTCATCAAAAATTTGCGCCCCCTCATCAAAAATTTGCGCCCCCTCATCAAAAATTTGTGCCCCCTAAGCATATCTCGTTTTGCAGCTAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGTTCTGGAAGTATTATCATGT</pcr_primer_p1>
		<pcr_primer_p2>TCTGTAGTTTGCATTCACTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TGGTTCTGGAAGTATTATCATGTGAAAAAGCGGTGTACTTTCGTCCGAGAAATCGTCGAGACACTCGCCCATCATTTCTGGCTTTAGTGATAGCTTTTCTGCTAAGCTCGCTGATGTTTCTCTCAAGTTGATAATAGAACTTTTTTACTTTTCCTTGTGACAAATGCGCTCCGACCGAGATCCTAAAAGAGGAAGTAAATGTTTATTGATGATACTCTCAGCTTACAAGTGAATGCAAACTACAGA</canonical_amplicon>
		<polymorphic_amplicon>TGGTTCTGGAAGTATTATCATGTGAAAAAGCGGTGTACTTTCGTCCGAGAAATCGTCGAGACACTCGCCCATCATTTCTGGCTTTAGTGATAGCTTTTCTGCTAAGCTCGCTGATGTTTCTCTCAAGTTGATAATAGAACTTTTTTACTTTTCCTTGTGACAAATGCGCTCCGACSGAGATCCTAAAAGAGGAAGTAAATGTTTATTGATGATACTCTCAGCTTACAAGTGAATGCAAACTACAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35431</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>521358</contig_pos>
        <strand>+</strand>
        <context>AGAAGCTTTC[A/G]TTCTCGTATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTGATGATACTCTCAGCTTACAAGTGAATGCAAACTACAGAAGCTTTC</left_flank>
        <right_flank>TTCTCGTATTGAATTTCGAATCCAGTGTCATAATCATTTCCGAAATGATC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATTCGCGTTAGATTTTGAATCAGAGCTCACGTTCATAGCTGCTGACAGGTCTAATAGTAAGCCTGTGGTGTTCTTTGAAAGATCAACAGAACATTCTGGGGATGGAGAGAACGGAATCGGTGACAACGACATGGATCTTCTCGCCAATACAGAGTTCTGGTTGATCGGAGAAGAATCTCTTGCCGATACGAATCTGAATGGACATATTGTTAATTCAATATGGAAACGATACCGTACCTTCGGATGGTTCTGGAAGTATTATCATGTGAAAAAGCGGTGTACTTTCGTCCGAGAAATCGTCGAGACACTCGCCCATCATTTCTGGCTTTAGTGATAGCTTTTCTGCTAAGCTCGCTGATGTTTCTCTCAAGTTGATAATAGAACTTTTTTACTTTTCCTTGTGACAAATGCGCTCCGACCGAGATCCTAAAAGAGGAAGTAAATGTTTATTGATGATACTCTCAGCTTACAAGTGAATGCAAACTACAGAAGCTTTCGTTCTCGTATTGAATTTCGAATCCAGTGTCATAATCATTTCCGAAATGATCATATTCTTCTCGTTCTTGATCTAACATAGAGAAATTTGCGTTTTGTAAAGTTTCGTACTCTTTTTGTCCATAATCATCATCATCTAGCCATCTGTCATCCATTTCAAGCTCTTTGTAGAATTTTAAAATTCTATCTGTAAACTTTCTTCTGAATAAGAAAAAGGAAGAAGCCGAAACTTAAGAAAAAGCAAAAAAAACACAATAATTTGAAAAACGAAATAAGAACTAACAAGATTGTGAAGAAAATCCTTTCAGAACAAAAAAACAAAAATTTTGTGCCCCCTCATCAAAAATTTGCGCCCCCTCATCAAAAATTTGCGCCCCCTCATCAAAAATTTGTGCCCCCTAAGCATATCTCGTTTTGCAGCTAAGGAAGCCACTTTGTGGCCCCTAATCAAACTAGGTTGTGCCCCCTAAGAATTTGTGCCCCCAAACCATTGAGCCCCCTTG</canonical>
            <polymorphic>ACATTCGCGTTAGATTTTGAATCAGAGCTCACGTTCATAGCTGCTGACAGGTCTAATAGTAAGCCTGTGGTGTTCTTTGAAAGATCAACAGAACATTCTGGGGATGGAGAGAACGGAATCGGTGACAACGACATGGATCTTCTCGCCAATACAGAGTTCTGGTTGATCGGAGAAGAATCTCTTGCCGATACGAATCTGAATGGACATATTGTTAATTCAATATGGAAACGATACCGTACCTTCGGATGGTTCTGGAAGTATTATCATGTGAAAAAGCGGTGTACTTTCGTCCGAGAAATCGTCGAGACACTCGCCCATCATTTCTGGCTTTAGTGATAGCTTTTCTGCTAAGCTCGCTGATGTTTCTCTCAAGTTGATAATAGAACTTTTTTACTTTTCCTTGTGACAAATGCGCTCCGACCGAGATCCTAAAAGAGGAAGTAAATGTTTATTGATGATACTCTCAGCTTACAAGTGAATGCAAACTACAGAAGCTTTCRTTCTCGTATTGAATTTCGAATCCAGTGTCATAATCATTTCCGAAATGATCATATTCTTCTCGTTCTTGATCTAACATAGAGAAATTTGCGTTTTGTAAAGTTTCGTACTCTTTTTGTCCATAATCATCATCATCTAGCCATCTGTCATCCATTTCAAGCTCTTTGTAGAATTTTAAAATTCTATCTGTAAACTTTCTTCTGAATAAGAAAAAGGAAGAAGCCGAAACTTAAGAAAAAGCAAAAAAAACACAATAATTTGAAAAACGAAATAAGAACTAACAAGATTGTGAAGAAAATCCTTTCAGAACAAAAAAACAAAAATTTTGTGCCCCCTCATCAAAAATTTGCGCCCCCTCATCAAAAATTTGCGCCCCCTCATCAAAAATTTGTGCCCCCTAAGCATATCTCGTTTTGCAGCTAAGGAAGCCACTTTGTGGCCCCTAATCAAACTAGGTTGTGCCCCCTAAGAATTTGTGCCCCCAAACCATTGAGCCCCCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTACTTTTCCTTGTGACAAAT</pcr_primer_p1>
		<pcr_primer_p2>GCTAGATGATGATGATTATGGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTACTTTTCCTTGTGACAAATGCGCTCCGACCGAGATCCTAAAAGAGGAAGTAAATGTTTATTGATGATACTCTCAGCTTACAAGTGAATGCAAACTACAGAAGCTTTCGTTCTCGTATTGAATTTCGAATCCAGTGTCATAATCATTTCCGAAATGATCATATTCTTCTCGTTCTTGATCTAACATAGAGAAATTTGCGTTTTGTAAAGTTTCGTACTCTTTTTGTCCATAATCATCATCATCTAGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTACTTTTCCTTGTGACAAATGCGCTCCGACCGAGATCCTAAAAGAGGAAGTAAATGTTTATTGATGATACTCTCAGCTTACAAGTGAATGCAAACTACAGAAGCTTTCRTTCTCGTATTGAATTTCGAATCCAGTGTCATAATCATTTCCGAAATGATCATATTCTTCTCGTTCTTGATCTAACATAGAGAAATTTGCGTTTTGTAAAGTTTCGTACTCTTTTTGTCCATAATCATCATCATCTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35432</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>557843</contig_pos>
        <strand>+</strand>
        <context>AACTGAAGGT[G/T]GAAATTTCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCGCGGCGAACTTCCGGCGAGATGAGATAGTGACCATGGAACTGAAGGT</left_flank>
        <right_flank>GAAATTTCGAATTAAAAAAAATTAGTGATAGCAGAGGCCGTATGCAAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATAGTTGACAAGCACTGATGCACATTGTGGTATTCTCCTCACCCCTATCGACCTGATAATCATCTGGAAAAACAACAAAAATGAAGTGTTTCTCGCTTCTGAAAAGGAACAGCTGGAAAGAAACCGTATTTGCAGTGTTTGTTGAGAAATTGGAACCAAAAAACAATTTTATTTAAAAAGAAAGGACCAACAAGAAAACATAACATAACAATTTTGCGAGAAAAGCGAACAATGAATCAAAATAGGTGGCTAAGGAAAAGAGCGGAGAAGTATACGTGCAGAATGGAGTGAAAGCGGAGAAATCGAAAGAGGAGCAGCTGGTGCTCAGTCGATTCTCTGCGTCTCTTATCTTCCTCAATTGCACTTAGAATTCCATACTATCCATCTTTCGTCCTTCAACAACCACGGATGTGATGACATGACCGTCTTCTGTTTCCTTTGATTCAAGTTCGCGGCGAACTTCCGGCGAGATGAGATAGTGACCATGGAACTGAAGGTTGAAATTTCGAATTAAAAAAAATTAGTGATAGCAGAGGCCGTATGCAAGAAAGTGGTGGAAAACCATTTTCCGGTGTTTGGAAAATGATTTTCAGAAAGTCTGGAAAGGATATTCATTTTTAGTCATTTTTCGGACCAGAATCAATTTTAAAATGGGAAAAAATAATTTAAGACTTTCAGAAAATCCTTTTTCCAAACACCGGAAAATGGTTTCCGCCTTCTTTCATGCGACCTAAGAACTCAGATTCAATAGTGTTGGGGGATGACATAATTTAATTTCTTCCGTATTGGAATATCTTTAACCTCTTGCTATTAGCCTGGTCAATCCTGACCGGGGAATTGGAACGCCCCTGTCAACCAGGGTGCTCTACATTCCATAGCATAATAAAAAGAACTTTCATACTTAAAGTATTGGTTTGCTCAATATAATTTGATAAATTTGAAACTGTGCGCATTTGGAAATGAAGAAGCCGAACGTGAACCAGAATCAACAGAAGAAAA</canonical>
            <polymorphic>CATAGTTGACAAGCACTGATGCACATTGTGGTATTCTCCTCACCCCTATCGACCTGATAATCATCTGGAAAAACAACAAAAATGAAGTGTTTCTCGCTTCTGAAAAGGAACAGCTGGAAAGAAACCGTATTTGCAGTGTTTGTTGAGAAATTGGAACCAAAAAACAATTTTATTTAAAAAGAAAGGACCAACAAGAAAACATAACATAACAATTTTGCGAGAAAAGCGAACAATGAATCAAAATAGGTGGCTAAGGAAAAGAGCGGAGAAGTATACGTGCAGAATGGAGTGAAAGCGGAGAAATCGAAAGAGGAGCAGCTGGTGCTCAGTCGATTCTCTGCGTCTCTTATCTTCCTCAATTGCACTTAGAATTCCATACTATCCATCTTTCGTCCTTCAACAACCACGGATGTGATGACATGACCGTCTTCTGTTTCCTTTGATTCAAGTTCGCGGCGAACTTCCGGCGAGATGAGATAGTGACCATGGAACTGAAGGTKGAAATTTCGAATTAAAAAAAATTAGTGATAGCAGAGGCCGTATGCAAGAAAGTGGTGGAAAACCATTTTCCGGTGTTTGGAAAATGATTTTCAGAAAGTCTGGAAAGGATATTCATTTTTAGTCATTTTTCGGACCAGAATCAATTTTAAAATGGGAAAAAATAATTTAAGACTTTCAGAAAATCCTTTTTCCAAACACCGGAAAATGGTTTCCGCCTTCTTTCATGCGACCTAAGAACTCAGATTCAATAGTGTTGGGGGATGACATAATTTAATTTCTTCCGTATTGGAATATCTTTAACCTCTTGCTATTAGCCTGGTCAATCCTGACCGGGGAATTGGAACGCCCCTGTCAACCAGGGTGCTCTACATTCCATAGCATAATAAAAAGAACTTTCATACTTAAAGTATTGGTTTGCTCAATATAATTTGATAAATTTGAAACTGTGCGCATTTGGAAATGAAGAAGCCGAACGTGAACCAGAATCAACAGAAGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTTTCCTTTGATTCAAGTTC</pcr_primer_p1>
		<pcr_primer_p2>CCCCAACACTATTGAATCTG</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>CTGTTTCCTTTGATTCAAGTTCGCGGCGAACTTCCGGCGAGATGAGATAGTGACCATGGAACTGAAGGTTGAAATTTCGAATTAAAAAAAATTAGTGATAGCAGAGGCCGTATGCAAGAAAGTGGTGGAAAACCATTTTCCGGTGTTTGGAAAATGATTTTCAGAAAGTCTGGAAAGGATATTCATTTTTAGTCATTTTTCGGACCAGAATCAATTTTAAAATGGGAAAAAATAATTTAAGACTTTCAGAAAATCCTTTTTCCAAACACCGGAAAATGGTTTCCGCCTTCTTTCATGCGACCTAAGAACTCAGATTCAATAGTGTTGGGG</canonical_amplicon>
		<polymorphic_amplicon>CTGTTTCCTTTGATTCAAGTTCGCGGCGAACTTCCGGCGAGATGAGATAGTGACCATGGAACTGAAGGTKGAAATTTCGAATTAAAAAAAATTAGTGATAGCAGAGGCCGTATGCAAGAAAGTGGTGGAAAACCATTTTCCGGTGTTTGGAAAATGATTTTCAGAAAGTCTGGAAAGGATATTCATTTTTAGTCATTTTTCGGACCAGAATCAATTTTAAAATGGGAAAAAATAATTTAAGACTTTCAGAAAATCCTTTTTCCAAACACCGGAAAATGGTTTCCGCCTTCTTTCATGCGACCTAAGAACTCAGATTCAATAGTGTTGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35433</snp_id>
        <super_contig>c009801801.Contig1</super_contig>
        <contig_pos>557857</contig_pos>
        <strand>+</strand>
        <context>ATTTCGAATT[A/T]AAAAAAATTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCGGCGAGATGAGATAGTGACCATGGAACTGAAGGTTGAAATTTCGAATT</left_flank>
        <right_flank>AAAAAAATTAGTGATAGCAGAGGCCGTATGCAAGAAAGTGGTGGAAAACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTGATGCACATTGTGGTATTCTCCTCACCCCTATCGACCTGATAATCATCTGGAAAAACAACAAAAATGAAGTGTTTCTCGCTTCTGAAAAGGAACAGCTGGAAAGAAACCGTATTTGCAGTGTTTGTTGAGAAATTGGAACCAAAAAACAATTTTATTTAAAAAGAAAGGACCAACAAGAAAACATAACATAACAATTTTGCGAGAAAAGCGAACAATGAATCAAAATAGGTGGCTAAGGAAAAGAGCGGAGAAGTATACGTGCAGAATGGAGTGAAAGCGGAGAAATCGAAAGAGGAGCAGCTGGTGCTCAGTCGATTCTCTGCGTCTCTTATCTTCCTCAATTGCACTTAGAATTCCATACTATCCATCTTTCGTCCTTCAACAACCACGGATGTGATGACATGACCGTCTTCTGTTTCCTTTGATTCAAGTTCGCGGCGAACTTCCGGCGAGATGAGATAGTGACCATGGAACTGAAGGTTGAAATTTCGAATTAAAAAAAATTAGTGATAGCAGAGGCCGTATGCAAGAAAGTGGTGGAAAACCATTTTCCGGTGTTTGGAAAATGATTTTCAGAAAGTCTGGAAAGGATATTCATTTTTAGTCATTTTTCGGACCAGAATCAATTTTAAAATGGGAAAAAATAATTTAAGACTTTCAGAAAATCCTTTTTCCAAACACCGGAAAATGGTTTCCGCCTTCTTTCATGCGACCTAAGAACTCAGATTCAATAGTGTTGGGGGATGACATAATTTAATTTCTTCCGTATTGGAATATCTTTAACCTCTTGCTATTAGCCTGGTCAATCCTGACCGGGGAATTGGAACGCCCCTGTCAACCAGGGTGCTCTACATTCCATAGCATAATAAAAAGAACTTTCATACTTAAAGTATTGGTTTGCTCAATATAATTTGATAAATTTGAAACTGTGCGCATTTGGAAATGAAGAAGCCGAACGTGAACCAGAATCAACAGAAGAAAAAGAAGGTTCCAAGC</canonical>
            <polymorphic>ACTGATGCACATTGTGGTATTCTCCTCACCCCTATCGACCTGATAATCATCTGGAAAAACAACAAAAATGAAGTGTTTCTCGCTTCTGAAAAGGAACAGCTGGAAAGAAACCGTATTTGCAGTGTTTGTTGAGAAATTGGAACCAAAAAACAATTTTATTTAAAAAGAAAGGACCAACAAGAAAACATAACATAACAATTTTGCGAGAAAAGCGAACAATGAATCAAAATAGGTGGCTAAGGAAAAGAGCGGAGAAGTATACGTGCAGAATGGAGTGAAAGCGGAGAAATCGAAAGAGGAGCAGCTGGTGCTCAGTCGATTCTCTGCGTCTCTTATCTTCCTCAATTGCACTTAGAATTCCATACTATCCATCTTTCGTCCTTCAACAACCACGGATGTGATGACATGACCGTCTTCTGTTTCCTTTGATTCAAGTTCGCGGCGAACTTCCGGCGAGATGAGATAGTGACCATGGAACTGAAGGTTGAAATTTCGAATTWAAAAAAATTAGTGATAGCAGAGGCCGTATGCAAGAAAGTGGTGGAAAACCATTTTCCGGTGTTTGGAAAATGATTTTCAGAAAGTCTGGAAAGGATATTCATTTTTAGTCATTTTTCGGACCAGAATCAATTTTAAAATGGGAAAAAATAATTTAAGACTTTCAGAAAATCCTTTTTCCAAACACCGGAAAATGGTTTCCGCCTTCTTTCATGCGACCTAAGAACTCAGATTCAATAGTGTTGGGGGATGACATAATTTAATTTCTTCCGTATTGGAATATCTTTAACCTCTTGCTATTAGCCTGGTCAATCCTGACCGGGGAATTGGAACGCCCCTGTCAACCAGGGTGCTCTACATTCCATAGCATAATAAAAAGAACTTTCATACTTAAAGTATTGGTTTGCTCAATATAATTTGATAAATTTGAAACTGTGCGCATTTGGAAATGAAGAAGCCGAACGTGAACCAGAATCAACAGAAGAAAAAGAAGGTTCCAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>338 160 135 111 105 105 26 20</canonical_bands>
                <polymorphic_bands>473 160 111 105 105 26 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTTTCCTTTGATTCAAGTTC</pcr_primer_p1>
		<pcr_primer_p2>CCCCAACACTATTGAATCTG</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>CTGTTTCCTTTGATTCAAGTTCGCGGCGAACTTCCGGCGAGATGAGATAGTGACCATGGAACTGAAGGTTGAAATTTCGAATTAAAAAAAATTAGTGATAGCAGAGGCCGTATGCAAGAAAGTGGTGGAAAACCATTTTCCGGTGTTTGGAAAATGATTTTCAGAAAGTCTGGAAAGGATATTCATTTTTAGTCATTTTTCGGACCAGAATCAATTTTAAAATGGGAAAAAATAATTTAAGACTTTCAGAAAATCCTTTTTCCAAACACCGGAAAATGGTTTCCGCCTTCTTTCATGCGACCTAAGAACTCAGATTCAATAGTGTTGGGG</canonical_amplicon>
		<polymorphic_amplicon>CTGTTTCCTTTGATTCAAGTTCGCGGCGAACTTCCGGCGAGATGAGATAGTGACCATGGAACTGAAGGTTGAAATTTCGAATTWAAAAAAATTAGTGATAGCAGAGGCCGTATGCAAGAAAGTGGTGGAAAACCATTTTCCGGTGTTTGGAAAATGATTTTCAGAAAGTCTGGAAAGGATATTCATTTTTAGTCATTTTTCGGACCAGAATCAATTTTAAAATGGGAAAAAATAATTTAAGACTTTCAGAAAATCCTTTTTCCAAACACCGGAAAATGGTTTCCGCCTTCTTTCATGCGACCTAAGAACTCAGATTCAATAGTGTTGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35434</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>14803</contig_pos>
        <strand></strand>
        <context>aacaacttct[C/T]aactgataaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGTTTGAGCTCAATTATCTCAGTTCTTATGAAAGATTTCAACAACTTCT</left_flank>
        <right_flank>AACTGATAAATTATAGGTGATATTATGATAAATATTTTATCAGTTGACAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATATTATGATAAGAAATTTATCAGATGACGACTTTTTGGTATCTTTAACAGAAATCGAGATATGGGCTCAAAGTTGGAGGTTAGAGGGCCCTTCTATTACAGGTTTTACGGTACTCATATGTTCTCTCAAAATCGAAAAGTACTTTACAACCATTTTGGAAGCCATTCGAAATTCCTTTTTTATTAAAAAAAAGCACAATAGGGGGTAGAATGTGTAAATAAATGTGGGTGGAACAAAAATGTATGCACATAAAAATGAGTGGTCGATTATAAGCATAACCTTTTTTTGGGGATGTTGGAATTTCGGGGGAATGGTGGGATGAGGAGAGCAAAGAAACAGATAATAATGAATTGATTTTTGGGATTTTTTGAAAAGTCAAAAATTGAAACAATAAAAATGACATGAAACGAAGTTAGTATAATATTGAAACAAGCACTTTGTGCTTGCAGTTTGAGCTCAATTATCTCAGTTCTTATGAAAGATTTCAACAACTTCTCAACTGATAAATTATAGGTGATATTATGATAAATATTTTATCAGTTGACAAATGTTTGATATCTCTCAAAGGAACCGAGATAATTGAGCTCAAAGCACGTGTATAGGGTAGGCGTCTATTACAGCAACTGTGGTAAAAGTGAAACGTATAGAGTGAGCTCATATTACGGTAATCGATAAAACACTTAATTAGACGGTGCCTTTATAACCCTGCCTATTTGTAACTATTTGGCCTTTTTCTGACGGGGGGGGGGCATGAGAAAAGGGGGCCATGGGAAAAGGGGGACCCATGAGAAAAAGGAGGGGGGGGGGGGCATTGGAAAAATTATACCTAAGTTAAGATTAACCAATTTTCTCAATTTTTGTGGTTGTTTCCATTAAATTTCGCATACTTGCGAAAATCGTCGAAAGCGCGGAAGGCCCGGGCCGGCCCTTGAAAAATTTTGAGGGCCCGGTCCGGCCCGGAAGGCCCGGCAGGTATTTTTTGGTCGAAATTTCTCAA</canonical>
            <polymorphic>TGATATTATGATAAGAAATTTATCAGATGACGACTTTTTGGTATCTTTAACAGAAATCGAGATATGGGCTCAAAGTTGGAGGTTAGAGGGCCCTTCTATTACAGGTTTTACGGTACTCATATGTTCTCTCAAAATCGAAAAGTACTTTACAACCATTTTGGAAGCCATTCGAAATTCCTTTTTTATTAAAAAAAAGCACAATAGGGGGTAGAATGTGTAAATAAATGTGGGTGGAACAAAAATGTATGCACATAAAAATGAGTGGTCGATTATAAGCATAACCTTTTTTTGGGGATGTTGGAATTTCGGGGGAATGGTGGGATGAGGAGAGCAAAGAAACAGATAATAATGAATTGATTTTTGGGATTTTTTGAAAAGTCAAAAATTGAAACAATAAAAATGACATGAAACGAAGTTAGTATAATATTGAAACAAGCACTTTGTGCTTGCAGTTTGAGCTCAATTATCTCAGTTCTTATGAAAGATTTCAACAACTTCTYAACTGATAAATTATAGGTGATATTATGATAAATATTTTATCAGTTGACAAATGTTTGATATCTCTCAAAGGAACCGAGATAATTGAGCTCAAAGCACGTGTATAGGGTAGGCGTCTATTACAGCAACTGTGGTAAAAGTGAAACGTATAGAGTGAGCTCATATTACGGTAATCGATAAAACACTTAATTAGACGGTGCCTTTATAACCCTGCCTATTTGTAACTATTTGGCCTTTTTCTGACGGGGGGGGGGCATGAGAAAAGGGGGCCATGGGAAAAGGGGGACCCATGAGAAAAAGGAGGGGGGGGGGGGCATTGGAAAAATTATACCTAAGTTAAGATTAACCAATTTTCTCAATTTTTGTGGTTGTTTCCATTAAATTTCGCATACTTGCGAAAATCGTCGAAAGCGCGGAAGGCCCGGGCCGGCCCTTGAAAAATTTTGAGGGCCCGGTCCGGCCCGGAAGGCCCGGCAGGTATTTTTTGGTCGAAATTTCTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATGACATGAAACGAAGTTAG</pcr_primer_p1>
		<pcr_primer_p2>TACGTTTCACTTTTACCACAGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAATGACATGAAACGAAGTTAGTATAATATTGAAACAAGCACTTTGTGCTTGCAGTTTGAGCTCAATTATCTCAGTTCTTATGAAAGATTTCAACAACTTCTCAACTGATAAATTATAGGTGATATTATGATAAATATTTTATCAGTTGACAAATGTTTGATATCTCTCAAAGGAACCGAGATAATTGAGCTCAAAGCACGTGTATAGGGTAGGCGTCTATTACAGCAACTGTGGTAAAAGTGAAACGTA</canonical_amplicon>
		<polymorphic_amplicon>AAAATGACATGAAACGAAGTTAGTATAATATTGAAACAAGCACTTTGTGCTTGCAGTTTGAGCTCAATTATCTCAGTTCTTATGAAAGATTTCAACAACTTCTYAACTGATAAATTATAGGTGATATTATGATAAATATTTTATCAGTTGACAAATGTTTGATATCTCTCAAAGGAACCGAGATAATTGAGCTCAAAGCACGTGTATAGGGTAGGCGTCTATTACAGCAACTGTGGTAAAAGTGAAACGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35435</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>16580</contig_pos>
        <strand>+</strand>
        <context>TTGGAATAAA[A/C]GGAACAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAA</left_flank>
        <right_flank>GGAACAAAAAAGTCTTCAGGATATCTCCAGAATTGTTCTTCCCAGTTATA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAATAATAATTGTATTTTTCAAAGCGAAATTCGAAAAATAACTTACAGTGCACGGACAGTGTACGTTGGTGGTTGTCTGTTTGCATCAATGAATTTTGCTCCAATTTCATCCAGAACGAGATGTAGAAATCGGATGCCATGATCTTTACTGATTTGTGCATATTCCAGATTTTGAAATGCTTCTCCTGATTTCCATCTAGTCACAATGTCGATCAATTTTGATTTTCGGTATCTATTACCATCAAAAATAATCTGTCTTCCCCGAAAATGACGTACGAAATCCGGACTGTTGATTCTAAGGATATTTATACAAACAGATTCTGCATCATAAAATTTGGATTCCGGACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATCGATTGGAATACAGATTCTTTGTCCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGGAATAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAATCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTTTACTTTCGTCAAGAAGATACACCACACACGTTCCATCCGTTCTACAATATTGATACTCAATTGATCTGATACTTTGGGAGCTCTTCTTTTGTGATGACATGATCAATTTCTTCATATTTTTCGAAACAAAGGAAAGAAGAAGTAGGTCGAGATGATTCATATTG</canonical>
            <polymorphic>TGAATAATAATTGTATTTTTCAAAGCGAAATTCGAAAAATAACTTACAGTGCACGGACAGTGTACGTTGGTGGTTGTCTGTTTGCATCAATGAATTTTGCTCCAATTTCATCCAGAACGAGATGTAGAAATCGGATGCCATGATCTTTACTGATTTGTGCATATTCCAGATTTTGAAATGCTTCTCCTGATTTCCATCTAGTCACAATGTCGATCAATTTTGATTTTCGGTATCTATTACCATCAAAAATAATCTGTCTTCCCCGAAAATGACGTACGAAATCCGGACTGTTGATTCTAAGGATATTTATACAAACAGATTCTGCATCATAAAATTTGGATTCCGGACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAMGGAACAAAAAAGTCTTCAGGATATCTCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATCGATTGGAATACAGATTCTTTGTCCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGGAATAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAATCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTTTACTTTCGTCAAGAAGATACACCACACACGTTCCATCCGTTCTACAATATTGATACTCAATTGATCTGATACTTTGGGAGCTCTTCTTTTGTGATGACATGATCAATTTCTTCATATTTTTCGAAACAAAGGAAAGAAGAAGTAGGTCGAGATGATTCATATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATACAAACAGATTCTGCATCA</pcr_primer_p1>
		<pcr_primer_p2>GAACGAGTATAACTGGGAAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTATACAAACAGATTCTGCATCATAAAATTTGGATTCCGGACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAGAATTGTTCTTCCCAGTTATACTCGTTC</canonical_amplicon>
		<polymorphic_amplicon>TTATACAAACAGATTCTGCATCATAAAATTTGGATTCCGGACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAMGGAACAAAAAAGTCTTCAGGATATCTCCAGAATTGTTCTTCCCAGTTATACTCGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35436</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>16592</contig_pos>
        <strand>+</strand>
        <context>GAACAAAAAA[C/G]TCTTCAGGAY</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAA</left_flank>
        <right_flank>TCTTCAGGATATCTCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATTTTTCAAAGCGAAATTCGAAAAATAACTTACAGTGCACGGACAGTGTACGTTGGTGGTTGTCTGTTTGCATCAATGAATTTTGCTCCAATTTCATCCAGAACGAGATGTAGAAATCGGATGCCATGATCTTTACTGATTTGTGCATATTCCAGATTTTGAAATGCTTCTCCTGATTTCCATCTAGTCACAATGTCGATCAATTTTGATTTTCGGTATCTATTACCATCAAAAATAATCTGTCTTCCCCGAAAATGACGTACGAAATCCGGACTGTTGATTCTAAGGATATTTATACAAACAGATTCTGCATCATAAAATTTGGATTCCGGACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATCGATTGGAATACAGATTCTTTGTCCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGGAATAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAATCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTTTACTTTCGTCAAGAAGATACACCACACACGTTCCATCCGTTCTACAATATTGATACTCAATTGATCTGATACTTTGGGAGCTCTTCTTTTGTGATGACATGATCAATTTCTTCATATTTTTCGAAACAAAGGAAAGAAGAAGTAGGTCGAGATGATTCATATTGTCGATTATCTCT</canonical>
            <polymorphic>GTATTTTTCAAAGCGAAATTCGAAAAATAACTTACAGTGCACGGACAGTGTACGTTGGTGGTTGTCTGTTTGCATCAATGAATTTTGCTCCAATTTCATCCAGAACGAGATGTAGAAATCGGATGCCATGATCTTTACTGATTTGTGCATATTCCAGATTTTGAAATGCTTCTCCTGATTTCCATCTAGTCACAATGTCGATCAATTTTGATTTTCGGTATCTATTACCATCAAAAATAATCTGTCTTCCCCGAAAATGACGTACGAAATCCGGACTGTTGATTCTAAGGATATTTATACAAACAGATTCTGCATCATAAAATTTGGATTCCGGACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAASTCTTCAGGATATCTCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATCGATTGGAATACAGATTCTTTGTCCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGGAATAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAATCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTTTACTTTCGTCAAGAAGATACACCACACACGTTCCATCCGTTCTACAATATTGATACTCAATTGATCTGATACTTTGGGAGCTCTTCTTTTGTGATGACATGATCAATTTCTTCATATTTTTCGAAACAAAGGAAAGAAGAAGTAGGTCGAGATGATTCATATTGTCGATTATCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCAATGGCTTCATTTTCTTAT</pcr_primer_p1>
		<pcr_primer_p2>GATTCATAACCACTTTCTTGATG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATC</canonical_amplicon>
		<polymorphic_amplicon>ACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAASTCTTCAGGATATCTCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35437</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>16602</contig_pos>
        <strand>+</strand>
        <context>STCTTCAGGA[C/T]ATSTCCAGRM</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGA</left_flank>
        <right_flank>ATCTCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCGAAATTCGAAAAATAACTTACAGTGCACGGACAGTGTACGTTGGTGGTTGTCTGTTTGCATCAATGAATTTTGCTCCAATTTCATCCAGAACGAGATGTAGAAATCGGATGCCATGATCTTTACTGATTTGTGCATATTCCAGATTTTGAAATGCTTCTCCTGATTTCCATCTAGTCACAATGTCGATCAATTTTGATTTTCGGTATCTATTACCATCAAAAATAATCTGTCTTCCCCGAAAATGACGTACGAAATCCGGACTGTTGATTCTAAGGATATTTATACAAACAGATTCTGCATCATAAAATTTGGATTCCGGACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATCGATTGGAATACAGATTCTTTGTCCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGGAATAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAATCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTTTACTTTCGTCAAGAAGATACACCACACACGTTCCATCCGTTCTACAATATTGATACTCAATTGATCTGATACTTTGGGAGCTCTTCTTTTGTGATGACATGATCAATTTCTTCATATTTTTCGAAACAAAGGAAAGAAGAAGTAGGTCGAGATGATTCATATTGTCGATTATCTCTTTTTGTACCA</canonical>
            <polymorphic>AAGCGAAATTCGAAAAATAACTTACAGTGCACGGACAGTGTACGTTGGTGGTTGTCTGTTTGCATCAATGAATTTTGCTCCAATTTCATCCAGAACGAGATGTAGAAATCGGATGCCATGATCTTTACTGATTTGTGCATATTCCAGATTTTGAAATGCTTCTCCTGATTTCCATCTAGTCACAATGTCGATCAATTTTGATTTTCGGTATCTATTACCATCAAAAATAATCTGTCTTCCCCGAAAATGACGTACGAAATCCGGACTGTTGATTCTAAGGATATTTATACAAACAGATTCTGCATCATAAAATTTGGATTCCGGACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGAYATCTCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATCGATTGGAATACAGATTCTTTGTCCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGGAATAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAATCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTTTACTTTCGTCAAGAAGATACACCACACACGTTCCATCCGTTCTACAATATTGATACTCAATTGATCTGATACTTTGGGAGCTCTTCTTTTGTGATGACATGATCAATTTCTTCATATTTTTCGAAACAAAGGAAAGAAGAAGTAGGTCGAGATGATTCATATTGTCGATTATCTCTTTTTGTACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCAATGGCTTCATTTTCTTAT</pcr_primer_p1>
		<pcr_primer_p2>GATTCATAACCACTTTCTTGATG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATC</canonical_amplicon>
		<polymorphic_amplicon>ACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGAYATCTCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35438</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>16605</contig_pos>
        <strand>+</strand>
        <context>TTCAGGAYAT[C/G]TCCAGRMTKG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATAT</left_flank>
        <right_flank>TCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAAATTCGAAAAATAACTTACAGTGCACGGACAGTGTACGTTGGTGGTTGTCTGTTTGCATCAATGAATTTTGCTCCAATTTCATCCAGAACGAGATGTAGAAATCGGATGCCATGATCTTTACTGATTTGTGCATATTCCAGATTTTGAAATGCTTCTCCTGATTTCCATCTAGTCACAATGTCGATCAATTTTGATTTTCGGTATCTATTACCATCAAAAATAATCTGTCTTCCCCGAAAATGACGTACGAAATCCGGACTGTTGATTCTAAGGATATTTATACAAACAGATTCTGCATCATAAAATTTGGATTCCGGACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATCGATTGGAATACAGATTCTTTGTCCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGGAATAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAATCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTTTACTTTCGTCAAGAAGATACACCACACACGTTCCATCCGTTCTACAATATTGATACTCAATTGATCTGATACTTTGGGAGCTCTTCTTTTGTGATGACATGATCAATTTCTTCATATTTTTCGAAACAAAGGAAAGAAGAAGTAGGTCGAGATGATTCATATTGTCGATTATCTCTTTTTGTACCACGA</canonical>
            <polymorphic>CGAAATTCGAAAAATAACTTACAGTGCACGGACAGTGTACGTTGGTGGTTGTCTGTTTGCATCAATGAATTTTGCTCCAATTTCATCCAGAACGAGATGTAGAAATCGGATGCCATGATCTTTACTGATTTGTGCATATTCCAGATTTTGAAATGCTTCTCCTGATTTCCATCTAGTCACAATGTCGATCAATTTTGATTTTCGGTATCTATTACCATCAAAAATAATCTGTCTTCCCCGAAAATGACGTACGAAATCCGGACTGTTGATTCTAAGGATATTTATACAAACAGATTCTGCATCATAAAATTTGGATTCCGGACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATSTCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATCGATTGGAATACAGATTCTTTGTCCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGGAATAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAATCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTTTACTTTCGTCAAGAAGATACACCACACACGTTCCATCCGTTCTACAATATTGATACTCAATTGATCTGATACTTTGGGAGCTCTTCTTTTGTGATGACATGATCAATTTCTTCATATTTTTCGAAACAAAGGAAAGAAGAAGTAGGTCGAGATGATTCATATTGTCGATTATCTCTTTTTGTACCACGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCAATGGCTTCATTTTCTTAT</pcr_primer_p1>
		<pcr_primer_p2>GATTCATAACCACTTTCTTGATG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATC</canonical_amplicon>
		<polymorphic_amplicon>ACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATSTCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35439</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>16611</contig_pos>
        <strand>+</strand>
        <context>AYATSTCCAG[A/G]MTKGTTCTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAG</left_flank>
        <right_flank>ATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAAAAATAACTTACAGTGCACGGACAGTGTACGTTGGTGGTTGTCTGTTTGCATCAATGAATTTTGCTCCAATTTCATCCAGAACGAGATGTAGAAATCGGATGCCATGATCTTTACTGATTTGTGCATATTCCAGATTTTGAAATGCTTCTCCTGATTTCCATCTAGTCACAATGTCGATCAATTTTGATTTTCGGTATCTATTACCATCAAAAATAATCTGTCTTCCCCGAAAATGACGTACGAAATCCGGACTGTTGATTCTAAGGATATTTATACAAACAGATTCTGCATCATAAAATTTGGATTCCGGACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATCGATTGGAATACAGATTCTTTGTCCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGGAATAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAATCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTTTACTTTCGTCAAGAAGATACACCACACACGTTCCATCCGTTCTACAATATTGATACTCAATTGATCTGATACTTTGGGAGCTCTTCTTTTGTGATGACATGATCAATTTCTTCATATTTTTCGAAACAAAGGAAAGAAGAAGTAGGTCGAGATGATTCATATTGTCGATTATCTCTTTTTGTACCACGAACGGAT</canonical>
            <polymorphic>TCGAAAAATAACTTACAGTGCACGGACAGTGTACGTTGGTGGTTGTCTGTTTGCATCAATGAATTTTGCTCCAATTTCATCCAGAACGAGATGTAGAAATCGGATGCCATGATCTTTACTGATTTGTGCATATTCCAGATTTTGAAATGCTTCTCCTGATTTCCATCTAGTCACAATGTCGATCAATTTTGATTTTCGGTATCTATTACCATCAAAAATAATCTGTCTTCCCCGAAAATGACGTACGAAATCCGGACTGTTGATTCTAAGGATATTTATACAAACAGATTCTGCATCATAAAATTTGGATTCCGGACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAGRATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATCGATTGGAATACAGATTCTTTGTCCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGGAATAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAATCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTTTACTTTCGTCAAGAAGATACACCACACACGTTCCATCCGTTCTACAATATTGATACTCAATTGATCTGATACTTTGGGAGCTCTTCTTTTGTGATGACATGATCAATTTCTTCATATTTTTCGAAACAAAGGAAAGAAGAAGTAGGTCGAGATGATTCATATTGTCGATTATCTCTTTTTGTACCACGAACGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>138 118 108 97 81 66 60 54 48 47 47 43 41 22 20 10</canonical_bands>
                <polymorphic_bands>138 118 108 97 81 66 60 57 54 48 47 43 41 22 20</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>206 153 120 117 112 91 61 46 45 38 11</canonical_bands>
                <polymorphic_bands>359 120 117 112 91 61 46 45 38 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCAATGGCTTCATTTTCTTAT</pcr_primer_p1>
		<pcr_primer_p2>GATTCATAACCACTTTCTTGATG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATC</canonical_amplicon>
		<polymorphic_amplicon>ACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAGRATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35440</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>16612</contig_pos>
        <strand>+</strand>
        <context>YATSTCCAGR[A/C]TKGTTCTTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAGA</left_flank>
        <right_flank>TTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAAAAATAACTTACAGTGCACGGACAGTGTACGTTGGTGGTTGTCTGTTTGCATCAATGAATTTTGCTCCAATTTCATCCAGAACGAGATGTAGAAATCGGATGCCATGATCTTTACTGATTTGTGCATATTCCAGATTTTGAAATGCTTCTCCTGATTTCCATCTAGTCACAATGTCGATCAATTTTGATTTTCGGTATCTATTACCATCAAAAATAATCTGTCTTCCCCGAAAATGACGTACGAAATCCGGACTGTTGATTCTAAGGATATTTATACAAACAGATTCTGCATCATAAAATTTGGATTCCGGACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATCGATTGGAATACAGATTCTTTGTCCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGGAATAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAATCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTTTACTTTCGTCAAGAAGATACACCACACACGTTCCATCCGTTCTACAATATTGATACTCAATTGATCTGATACTTTGGGAGCTCTTCTTTTGTGATGACATGATCAATTTCTTCATATTTTTCGAAACAAAGGAAAGAAGAAGTAGGTCGAGATGATTCATATTGTCGATTATCTCTTTTTGTACCACGAACGGATA</canonical>
            <polymorphic>CGAAAAATAACTTACAGTGCACGGACAGTGTACGTTGGTGGTTGTCTGTTTGCATCAATGAATTTTGCTCCAATTTCATCCAGAACGAGATGTAGAAATCGGATGCCATGATCTTTACTGATTTGTGCATATTCCAGATTTTGAAATGCTTCTCCTGATTTCCATCTAGTCACAATGTCGATCAATTTTGATTTTCGGTATCTATTACCATCAAAAATAATCTGTCTTCCCCGAAAATGACGTACGAAATCCGGACTGTTGATTCTAAGGATATTTATACAAACAGATTCTGCATCATAAAATTTGGATTCCGGACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAGAMTTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATCGATTGGAATACAGATTCTTTGTCCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGGAATAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAATCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTTTACTTTCGTCAAGAAGATACACCACACACGTTCCATCCGTTCTACAATATTGATACTCAATTGATCTGATACTTTGGGAGCTCTTCTTTTGTGATGACATGATCAATTTCTTCATATTTTTCGAAACAAAGGAAAGAAGAAGTAGGTCGAGATGATTCATATTGTCGATTATCTCTTTTTGTACCACGAACGGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>206 153 120 117 112 92 60 46 45 38 11</canonical_bands>
                <polymorphic_bands>359 120 117 112 92 60 46 45 38 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCAATGGCTTCATTTTCTTAT</pcr_primer_p1>
		<pcr_primer_p2>GATTCATAACCACTTTCTTGATG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATC</canonical_amplicon>
		<polymorphic_amplicon>ACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAGAMTTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35441</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>16614</contig_pos>
        <strand>+</strand>
        <context>TSTCCAGRMT[G/T]GTTCTTCCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAGAAT</left_flank>
        <right_flank>GTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATAACTTACAGTGCACGGACAGTGTACGTTGGTGGTTGTCTGTTTGCATCAATGAATTTTGCTCCAATTTCATCCAGAACGAGATGTAGAAATCGGATGCCATGATCTTTACTGATTTGTGCATATTCCAGATTTTGAAATGCTTCTCCTGATTTCCATCTAGTCACAATGTCGATCAATTTTGATTTTCGGTATCTATTACCATCAAAAATAATCTGTCTTCCCCGAAAATGACGTACGAAATCCGGACTGTTGATTCTAAGGATATTTATACAAACAGATTCTGCATCATAAAATTTGGATTCCGGACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATCGATTGGAATACAGATTCTTTGTCCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGGAATAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAATCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTTTACTTTCGTCAAGAAGATACACCACACACGTTCCATCCGTTCTACAATATTGATACTCAATTGATCTGATACTTTGGGAGCTCTTCTTTTGTGATGACATGATCAATTTCTTCATATTTTTCGAAACAAAGGAAAGAAGAAGTAGGTCGAGATGATTCATATTGTCGATTATCTCTTTTTGTACCACGAACGGATACT</canonical>
            <polymorphic>AAAAATAACTTACAGTGCACGGACAGTGTACGTTGGTGGTTGTCTGTTTGCATCAATGAATTTTGCTCCAATTTCATCCAGAACGAGATGTAGAAATCGGATGCCATGATCTTTACTGATTTGTGCATATTCCAGATTTTGAAATGCTTCTCCTGATTTCCATCTAGTCACAATGTCGATCAATTTTGATTTTCGGTATCTATTACCATCAAAAATAATCTGTCTTCCCCGAAAATGACGTACGAAATCCGGACTGTTGATTCTAAGGATATTTATACAAACAGATTCTGCATCATAAAATTTGGATTCCGGACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAGAATKGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATCGATTGGAATACAGATTCTTTGTCCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGGAATAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAATCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTTTACTTTCGTCAAGAAGATACACCACACACGTTCCATCCGTTCTACAATATTGATACTCAATTGATCTGATACTTTGGGAGCTCTTCTTTTGTGATGACATGATCAATTTCTTCATATTTTTCGAAACAAAGGAAAGAAGAAGTAGGTCGAGATGATTCATATTGTCGATTATCTCTTTTTGTACCACGAACGGATACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>206 153 120 117 112 94 58 46 45 38 11</canonical_bands>
                <polymorphic_bands>359 120 117 112 94 58 46 45 38 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCAATGGCTTCATTTTCTTAT</pcr_primer_p1>
		<pcr_primer_p2>GATTCATAACCACTTTCTTGATG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATC</canonical_amplicon>
		<polymorphic_amplicon>ACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAGAATKGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35442</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>16746</contig_pos>
        <strand>+</strand>
        <context>GGAGAATCTG[A/G]AAYAATGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTG</left_flank>
        <right_flank>AATAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGATTTTGAAATGCTTCTCCTGATTTCCATCTAGTCACAATGTCGATCAATTTTGATTTTCGGTATCTATTACCATCAAAAATAATCTGTCTTCCCCGAAAATGACGTACGAAATCCGGACTGTTGATTCTAAGGATATTTATACAAACAGATTCTGCATCATAAAATTTGGATTCCGGACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATCGATTGGAATACAGATTCTTTGTCCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGGAATAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAATCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTTTACTTTCGTCAAGAAGATACACCACACACGTTCCATCCGTTCTACAATATTGATACTCAATTGATCTGATACTTTGGGAGCTCTTCTTTTGTGATGACATGATCAATTTCTTCATATTTTTCGAAACAAAGGAAAGAAGAAGTAGGTCGAGATGATTCATATTGTCGATTATCTCTTTTTGTACCACGAACGGATACTTGGATAGAATCATTTTCTGAAAATATTAGCAAAGATTATAGAGAAACACAGAAGAATGAAACAGAATACGAGTCCGTAAAGAAGAGAAATGACGTGGCAGATGGAGGTGCAGAAGACGCAGAGAAGAGATGA</canonical>
            <polymorphic>CAGATTTTGAAATGCTTCTCCTGATTTCCATCTAGTCACAATGTCGATCAATTTTGATTTTCGGTATCTATTACCATCAAAAATAATCTGTCTTCCCCGAAAATGACGTACGAAATCCGGACTGTTGATTCTAAGGATATTTATACAAACAGATTCTGCATCATAAAATTTGGATTCCGGACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATCGATTGGAATACAGATTCTTTGTCCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGRAATAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAATCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTTTACTTTCGTCAAGAAGATACACCACACACGTTCCATCCGTTCTACAATATTGATACTCAATTGATCTGATACTTTGGGAGCTCTTCTTTTGTGATGACATGATCAATTTCTTCATATTTTTCGAAACAAAGGAAAGAAGAAGTAGGTCGAGATGATTCATATTGTCGATTATCTCTTTTTGTACCACGAACGGATACTTGGATAGAATCATTTTCTGAAAATATTAGCAAAGATTATAGAGAAACACAGAAGAATGAAACAGAATACGAGTCCGTAAAGAAGAGAAATGACGTGGCAGATGGAGGTGCAGAAGACGCAGAGAAGAGATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>182 138 118 108 97 66 60 48 47 43 41 22 20 10</canonical_bands>
                <polymorphic_bands>182 159 138 108 97 66 60 48 47 43 22 20 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCGATTGGAATACAGATTCTT</pcr_primer_p1>
		<pcr_primer_p2>AACCTTTAGTGAAATATCACAGG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATCGATTGGAATACAGATTCTTTGTCCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGGAATAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAATCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTT</canonical_amplicon>
		<polymorphic_amplicon>AATCGATTGGAATACAGATTCTTTGTCCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGRAATAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAATCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35443</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>16749</contig_pos>
        <strand>+</strand>
        <context>GAATCTGRAA[C/T]AATGATTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGGAA</left_flank>
        <right_flank>AATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAATCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTGAAATGCTTCTCCTGATTTCCATCTAGTCACAATGTCGATCAATTTTGATTTTCGGTATCTATTACCATCAAAAATAATCTGTCTTCCCCGAAAATGACGTACGAAATCCGGACTGTTGATTCTAAGGATATTTATACAAACAGATTCTGCATCATAAAATTTGGATTCCGGACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATCGATTGGAATACAGATTCTTTGTCCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGGAATAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAATCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTTTACTTTCGTCAAGAAGATACACCACACACGTTCCATCCGTTCTACAATATTGATACTCAATTGATCTGATACTTTGGGAGCTCTTCTTTTGTGATGACATGATCAATTTCTTCATATTTTTCGAAACAAAGGAAAGAAGAAGTAGGTCGAGATGATTCATATTGTCGATTATCTCTTTTTGTACCACGAACGGATACTTGGATAGAATCATTTTCTGAAAATATTAGCAAAGATTATAGAGAAACACAGAAGAATGAAACAGAATACGAGTCCGTAAAGAAGAGAAATGACGTGGCAGATGGAGGTGCAGAAGACGCAGAGAAGAGATGACCT</canonical>
            <polymorphic>ATTTTGAAATGCTTCTCCTGATTTCCATCTAGTCACAATGTCGATCAATTTTGATTTTCGGTATCTATTACCATCAAAAATAATCTGTCTTCCCCGAAAATGACGTACGAAATCCGGACTGTTGATTCTAAGGATATTTATACAAACAGATTCTGCATCATAAAATTTGGATTCCGGACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATCGATTGGAATACAGATTCTTTGTCCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGGAAYAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAATCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTTTACTTTCGTCAAGAAGATACACCACACACGTTCCATCCGTTCTACAATATTGATACTCAATTGATCTGATACTTTGGGAGCTCTTCTTTTGTGATGACATGATCAATTTCTTCATATTTTTCGAAACAAAGGAAAGAAGAAGTAGGTCGAGATGATTCATATTGTCGATTATCTCTTTTTGTACCACGAACGGATACTTGGATAGAATCATTTTCTGAAAATATTAGCAAAGATTATAGAGAAACACAGAAGAATGAAACAGAATACGAGTCCGTAAAGAAGAGAAATGACGTGGCAGATGGAGGTGCAGAAGACGCAGAGAAGAGATGACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCGATTGGAATACAGATTCTT</pcr_primer_p1>
		<pcr_primer_p2>AACCTTTAGTGAAATATCACAGG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATCGATTGGAATACAGATTCTTTGTCCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGGAATAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAATCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTT</canonical_amplicon>
		<polymorphic_amplicon>AATCGATTGGAATACAGATTCTTTGTCCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGGAAYAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAATCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35444</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>16797</contig_pos>
        <strand>+</strand>
        <context>CTAAAATCAA[G/T]CAWCTTTCCC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAA</left_flank>
        <right_flank>CATCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGATTTTCGGTATCTATTACCATCAAAAATAATCTGTCTTCCCCGAAAATGACGTACGAAATCCGGACTGTTGATTCTAAGGATATTTATACAAACAGATTCTGCATCATAAAATTTGGATTCCGGACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATCGATTGGAATACAGATTCTTTGTCCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGGAATAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAATCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTTTACTTTCGTCAAGAAGATACACCACACACGTTCCATCCGTTCTACAATATTGATACTCAATTGATCTGATACTTTGGGAGCTCTTCTTTTGTGATGACATGATCAATTTCTTCATATTTTTCGAAACAAAGGAAAGAAGAAGTAGGTCGAGATGATTCATATTGTCGATTATCTCTTTTTGTACCACGAACGGATACTTGGATAGAATCATTTTCTGAAAATATTAGCAAAGATTATAGAGAAACACAGAAGAATGAAACAGAATACGAGTCCGTAAAGAAGAGAAATGACGTGGCAGATGGAGGTGCAGAAGACGCAGAGAAGAGATGACCTTGACTGGTTAGCACACACTCTGGCCCACAAGGACCAACTCTCCATGAA</canonical>
            <polymorphic>TTTTGATTTTCGGTATCTATTACCATCAAAAATAATCTGTCTTCCCCGAAAATGACGTACGAAATCCGGACTGTTGATTCTAAGGATATTTATACAAACAGATTCTGCATCATAAAATTTGGATTCCGGACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATCGATTGGAATACAGATTCTTTGTCCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGGAATAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAAKCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTTTACTTTCGTCAAGAAGATACACCACACACGTTCCATCCGTTCTACAATATTGATACTCAATTGATCTGATACTTTGGGAGCTCTTCTTTTGTGATGACATGATCAATTTCTTCATATTTTTCGAAACAAAGGAAAGAAGAAGTAGGTCGAGATGATTCATATTGTCGATTATCTCTTTTTGTACCACGAACGGATACTTGGATAGAATCATTTTCTGAAAATATTAGCAAAGATTATAGAGAAACACAGAAGAATGAAACAGAATACGAGTCCGTAAAGAAGAGAAATGACGTGGCAGATGGAGGTGCAGAAGACGCAGAGAAGAGATGACCTTGACTGGTTAGCACACACTCTGGCCCACAAGGACCAACTCTCCATGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCGATTGGAATACAGATTCTT</pcr_primer_p1>
		<pcr_primer_p2>AACCTTTAGTGAAATATCACAGG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATCGATTGGAATACAGATTCTTTGTCCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGGAATAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAATCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTT</canonical_amplicon>
		<polymorphic_amplicon>AATCGATTGGAATACAGATTCTTTGTCCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGGAATAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAAKCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35445</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>16800</contig_pos>
        <strand>+</strand>
        <context>AAATCAAKCA[A/T]CTTTCCCAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAATCA</left_flank>
        <right_flank>CTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATTTTCGGTATCTATTACCATCAAAAATAATCTGTCTTCCCCGAAAATGACGTACGAAATCCGGACTGTTGATTCTAAGGATATTTATACAAACAGATTCTGCATCATAAAATTTGGATTCCGGACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATCGATTGGAATACAGATTCTTTGTCCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGGAATAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAATCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTTTACTTTCGTCAAGAAGATACACCACACACGTTCCATCCGTTCTACAATATTGATACTCAATTGATCTGATACTTTGGGAGCTCTTCTTTTGTGATGACATGATCAATTTCTTCATATTTTTCGAAACAAAGGAAAGAAGAAGTAGGTCGAGATGATTCATATTGTCGATTATCTCTTTTTGTACCACGAACGGATACTTGGATAGAATCATTTTCTGAAAATATTAGCAAAGATTATAGAGAAACACAGAAGAATGAAACAGAATACGAGTCCGTAAAGAAGAGAAATGACGTGGCAGATGGAGGTGCAGAAGACGCAGAGAAGAGATGACCTTGACTGGTTAGCACACACTCTGGCCCACAAGGACCAACTCTCCATGAAAGT</canonical>
            <polymorphic>TGATTTTCGGTATCTATTACCATCAAAAATAATCTGTCTTCCCCGAAAATGACGTACGAAATCCGGACTGTTGATTCTAAGGATATTTATACAAACAGATTCTGCATCATAAAATTTGGATTCCGGACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATCGATTGGAATACAGATTCTTTGTCCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGGAATAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAATCAWCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTTTACTTTCGTCAAGAAGATACACCACACACGTTCCATCCGTTCTACAATATTGATACTCAATTGATCTGATACTTTGGGAGCTCTTCTTTTGTGATGACATGATCAATTTCTTCATATTTTTCGAAACAAAGGAAAGAAGAAGTAGGTCGAGATGATTCATATTGTCGATTATCTCTTTTTGTACCACGAACGGATACTTGGATAGAATCATTTTCTGAAAATATTAGCAAAGATTATAGAGAAACACAGAAGAATGAAACAGAATACGAGTCCGTAAAGAAGAGAAATGACGTGGCAGATGGAGGTGCAGAAGACGCAGAGAAGAGATGACCTTGACTGGTTAGCACACACTCTGGCCCACAAGGACCAACTCTCCATGAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCGATTGGAATACAGATTCTT</pcr_primer_p1>
		<pcr_primer_p2>AACCTTTAGTGAAATATCACAGG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATCGATTGGAATACAGATTCTTTGTCCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGGAATAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAATCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTT</canonical_amplicon>
		<polymorphic_amplicon>AATCGATTGGAATACAGATTCTTTGTCCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGGAATAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAATCAWCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35446</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>16838</contig_pos>
        <strand>+</strand>
        <context>ATCATTTTTA[C/T]CTTCATCGCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAATCAATCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTA</left_flank>
        <right_flank>CTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCCCGAAAATGACGTACGAAATCCGGACTGTTGATTCTAAGGATATTTATACAAACAGATTCTGCATCATAAAATTTGGATTCCGGACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATCGATTGGAATACAGATTCTTTGTCCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGGAATAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAATCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTTTACTTTCGTCAAGAAGATACACCACACACGTTCCATCCGTTCTACAATATTGATACTCAATTGATCTGATACTTTGGGAGCTCTTCTTTTGTGATGACATGATCAATTTCTTCATATTTTTCGAAACAAAGGAAAGAAGAAGTAGGTCGAGATGATTCATATTGTCGATTATCTCTTTTTGTACCACGAACGGATACTTGGATAGAATCATTTTCTGAAAATATTAGCAAAGATTATAGAGAAACACAGAAGAATGAAACAGAATACGAGTCCGTAAAGAAGAGAAATGACGTGGCAGATGGAGGTGCAGAAGACGCAGAGAAGAGATGACCTTGACTGGTTAGCACACACTCTGGCCCACAAGGACCAACTCTCCATGAAAGTCAGATTAGTTGGATAGGTCATCTCTCTCAGGGTGGTCT</canonical>
            <polymorphic>TTCCCCGAAAATGACGTACGAAATCCGGACTGTTGATTCTAAGGATATTTATACAAACAGATTCTGCATCATAAAATTTGGATTCCGGACTCAATGGCTTCATTTTCTTATTCACGTGCAATTGAATAGTTTTCGCAACAGGAGATGAGGAGAAGAAGTTTTCAAAGTTTCTGACGTCCGAAAAATGTCCATCGAGATACAAACCAATACAAAATGATACGTTTTTGAGTTTTGGAATAAAAGGAACAAAAAAGTCTTCAGGATATCTCCAGAATTGTTCTTCCCAGTTATACTCGTTCGCATCCCCAAAGACATCAAGAAAGTGGTTATGAATCGATTGGAATACAGATTCTTTGTCCCATTCCAGATAGGATGCTATAGGATATTTGTAATCGTCGGAGAATCTGGAATAATGATTTTTTATGAAGCATAGGGAGTTGTGTCTCACCTAAAATCAATCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTAYCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTTTACTTTCGTCAAGAAGATACACCACACACGTTCCATCCGTTCTACAATATTGATACTCAATTGATCTGATACTTTGGGAGCTCTTCTTTTGTGATGACATGATCAATTTCTTCATATTTTTCGAAACAAAGGAAAGAAGAAGTAGGTCGAGATGATTCATATTGTCGATTATCTCTTTTTGTACCACGAACGGATACTTGGATAGAATCATTTTCTGAAAATATTAGCAAAGATTATAGAGAAACACAGAAGAATGAAACAGAATACGAGTCCGTAAAGAAGAGAAATGACGTGGCAGATGGAGGTGCAGAAGACGCAGAGAAGAGATGACCTTGACTGGTTAGCACACACTCTGGCCCACAAGGACCAACTCTCCATGAAAGTCAGATTAGTTGGATAGGTCATCTCTCTCAGGGTGGTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTGTGTCTCACCTAAAATCAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGATCATGTCATCACAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTTGTGTCTCACCTAAAATCAATCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTATCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTTTACTTTCGTCAAGAAGATACACCACACACGTTCCATCCGTTCTACAATATTGATACTCAATTGATCTGATACTTTGGGAGCTCTTCTTTTGTGATGACATGATCAAT</canonical_amplicon>
		<polymorphic_amplicon>AGTTGTGTCTCACCTAAAATCAATCATCTTTCCCAATACATTAAATTGGACATTATCATTTTTAYCTTCATCGCGTTTAACAATTCTCATGATCACGTCGTCGACGGTTCTGGACGACGGCCTGTGATATTTCACTAAAGGTTTACTTTCGTCAAGAAGATACACCACACACGTTCCATCCGTTCTACAATATTGATACTCAATTGATCTGATACTTTGGGAGCTCTTCTTTTGTGATGACATGATCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35447</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>42700</contig_pos>
        <strand></strand>
        <context>aaaaacgtaa[T/A]attycagaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGAAAACTTTTGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAACGTAA</left_flank>
        <right_flank>ATTTCAGAATTTCGGCTCGTTTGAACTACTTTCGCGTTTAAGTTTAGTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCCGTTGGCACAGCTTCAGATGCCTGAACGACCGGTGGTGGAGCCGAACCAAGACGGAGCGAAACTGGAGAATATTGTGGAGATGGAGAAGAAGCCGAAGCCACTGAACAAGGCGCCGACACCACAGGTCAATCCGATCACCGCCAAAGATGTTTCAGTCGCGATACCGCTTGCGAGCTCGGCGCCGAAATCGAAAAAATCACAAAAGACGAAATTAAAGTTAGAGGCTAGTCCTCCGGTGCATACGGATAAGACACAATCGGACCCGAGGAAAGACGTGGATCCGACACAAATTGGCACTTTGGAGGAGAATCCGGAGACGGTCACGAAGGACAAAGAAGCCGTTAAGAAAGAAGATAGCTCAATGGTGAATTTTTTTTTATTCGACGTAAGATCGAATTTCTCTTACTATTTATTGTCGAATTAAAAAAAAAACACCTGAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTTGAACTACTTTCGCGTTTAAGTTTAGTTTTTTTGCTGAAAAATAGATTCTAGAGATGCTAACGATTATTTTTAGACCAAGAAATCAGAATTTTCGTTCAGAAAATCCCACTAAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGCGCCGTCTCCGAGATTTTCAGGTGTCACTTTTTTTTATCCGACAATAAATTATATTTAAAAATCAACATAGTCCGCAAGTTACTGTAACGGTGTTTGCAGATTTTGCATCAAACTTTACGACATTTCTCTGAAAATTATTTTTCAGAAGAACAAAAATCCATCGACGTCGTTGAAGAAAACGAAAAAGGATGCAACATTTTTTCAGAAAACAACGAAGGGTGGTGACAAATAAACATTTAATTCGGTGTTCGAGAATTTTTTCATAAATATAATTCTAGGTTCTTTTTTTCCAGTGGT</canonical>
            <polymorphic>AATCCGTTGGCACAGCTTCAGATGCCTGAACGACCGGTGGTGGAGCCGAACCAAGACGGAGCGAAACTGGAGAATATTGTGGAGATGGAGAAGAAGCCGAAGCCACTGAACAAGGCGCCGACACCACAGGTCAATCCGATCACCGCCAAAGATGTTTCAGTCGCGATACCGCTTGCGAGCTCGGCGCCGAAATCGAAAAAATCACAAAAGACGAAATTAAAGTTAGAGGCTAGTCCTCCGGTGCATACGGATAAGACACAATCGGACCCGAGGAAAGACGTGGATCCGACACAAATTGGCACTTTGGAGGAGAATCCGGAGACGGTCACGAAGGACAAAGAAGCCGTTAAGAAAGAAGATAGCTCAATGGTGAATTTTTTTTTATTCGACGTAAGATCGAATTTCTCTTACTATTTATTGTCGAATTAAAAAAAAAACACCTGAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAACGTAAWATTTCAGAATTTCGGCTCGTTTGAACTACTTTCGCGTTTAAGTTTAGTTTTTTTGCTGAAAAATAGATTCTAGAGATGCTAACGATTATTTTTAGACCAAGAAATCAGAATTTTCGTTCAGAAAATCCCACTAAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGCGCCGTCTCCGAGATTTTCAGGTGTCACTTTTTTTTATCCGACAATAAATTATATTTAAAAATCAACATAGTCCGCAAGTTACTGTAACGGTGTTTGCAGATTTTGCATCAAACTTTACGACATTTCTCTGAAAATTATTTTTCAGAAGAACAAAAATCCATCGACGTCGTTGAAGAAAACGAAAAAGGATGCAACATTTTTTCAGAAAACAACGAAGGGTGGTGACAAATAAACATTTAATTCGGTGTTCGAGAATTTTTTCATAAATATAATTCTAGGTTCTTTTTTTCCAGTGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 425 75</canonical_bands>
                <polymorphic_bands>925 75</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTAAGATCGAATTTCTCTTACTAT</pcr_primer_p1>
		<pcr_primer_p2>TGCGGACTATGTTGATTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>390</pcr_amplicon_size>
		<canonical_amplicon>CGTAAGATCGAATTTCTCTTACTATTTATTGTCGAATTAAAAAAAAAACACCTGAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTTGAACTACTTTCGCGTTTAAGTTTAGTTTTTTTGCTGAAAAATAGATTCTAGAGATGCTAACGATTATTTTTAGACCAAGAAATCAGAATTTTCGTTCAGAAAATCCCACTAAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGCGCCGTCTCCGAGATTTTCAGGTGTCACTTTTTTTTATCCGACAATAAATTATATTTAAAAATCAACATAGTCCGCA</canonical_amplicon>
		<polymorphic_amplicon>CGTAAGATCGAATTTCTCTTACTATTTATTGTCGAATTAAAAAAAAAACACCTGAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAACGTAAWATTTCAGAATTTCGGCTCGTTTGAACTACTTTCGCGTTTAAGTTTAGTTTTTTTGCTGAAAAATAGATTCTAGAGATGCTAACGATTATTTTTAGACCAAGAAATCAGAATTTTCGTTCAGAAAATCCCACTAAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGCGCCGTCTCCGAGATTTTCAGGTGTCACTTTTTTTTATCCGACAATAAATTATATTTAAAAATCAACATAGTCCGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35448</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>42704</contig_pos>
        <strand></strand>
        <context>acgtaawatt[T/C]cagaatttcg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AACTTTTGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAACGTAATATT</left_flank>
        <right_flank>CAGAATTTCGGCTCGTTTGAACTACTTTCGCGTTTAAGTTTAGTTTTTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTGGCACAGCTTCAGATGCCTGAACGACCGGTGGTGGAGCCGAACCAAGACGGAGCGAAACTGGAGAATATTGTGGAGATGGAGAAGAAGCCGAAGCCACTGAACAAGGCGCCGACACCACAGGTCAATCCGATCACCGCCAAAGATGTTTCAGTCGCGATACCGCTTGCGAGCTCGGCGCCGAAATCGAAAAAATCACAAAAGACGAAATTAAAGTTAGAGGCTAGTCCTCCGGTGCATACGGATAAGACACAATCGGACCCGAGGAAAGACGTGGATCCGACACAAATTGGCACTTTGGAGGAGAATCCGGAGACGGTCACGAAGGACAAAGAAGCCGTTAAGAAAGAAGATAGCTCAATGGTGAATTTTTTTTTATTCGACGTAAGATCGAATTTCTCTTACTATTTATTGTCGAATTAAAAAAAAAACACCTGAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTTGAACTACTTTCGCGTTTAAGTTTAGTTTTTTTGCTGAAAAATAGATTCTAGAGATGCTAACGATTATTTTTAGACCAAGAAATCAGAATTTTCGTTCAGAAAATCCCACTAAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGCGCCGTCTCCGAGATTTTCAGGTGTCACTTTTTTTTATCCGACAATAAATTATATTTAAAAATCAACATAGTCCGCAAGTTACTGTAACGGTGTTTGCAGATTTTGCATCAAACTTTACGACATTTCTCTGAAAATTATTTTTCAGAAGAACAAAAATCCATCGACGTCGTTGAAGAAAACGAAAAAGGATGCAACATTTTTTCAGAAAACAACGAAGGGTGGTGACAAATAAACATTTAATTCGGTGTTCGAGAATTTTTTCATAAATATAATTCTAGGTTCTTTTTTTCCAGTGGTGATT</canonical>
            <polymorphic>CGTTGGCACAGCTTCAGATGCCTGAACGACCGGTGGTGGAGCCGAACCAAGACGGAGCGAAACTGGAGAATATTGTGGAGATGGAGAAGAAGCCGAAGCCACTGAACAAGGCGCCGACACCACAGGTCAATCCGATCACCGCCAAAGATGTTTCAGTCGCGATACCGCTTGCGAGCTCGGCGCCGAAATCGAAAAAATCACAAAAGACGAAATTAAAGTTAGAGGCTAGTCCTCCGGTGCATACGGATAAGACACAATCGGACCCGAGGAAAGACGTGGATCCGACACAAATTGGCACTTTGGAGGAGAATCCGGAGACGGTCACGAAGGACAAAGAAGCCGTTAAGAAAGAAGATAGCTCAATGGTGAATTTTTTTTTATTCGACGTAAGATCGAATTTCTCTTACTATTTATTGTCGAATTAAAAAAAAAACACCTGAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAACGTAATATTYCAGAATTTCGGCTCGTTTGAACTACTTTCGCGTTTAAGTTTAGTTTTTTTGCTGAAAAATAGATTCTAGAGATGCTAACGATTATTTTTAGACCAAGAAATCAGAATTTTCGTTCAGAAAATCCCACTAAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGCGCCGTCTCCGAGATTTTCAGGTGTCACTTTTTTTTATCCGACAATAAATTATATTTAAAAATCAACATAGTCCGCAAGTTACTGTAACGGTGTTTGCAGATTTTGCATCAAACTTTACGACATTTCTCTGAAAATTATTTTTCAGAAGAACAAAAATCCATCGACGTCGTTGAAGAAAACGAAAAAGGATGCAACATTTTTTCAGAAAACAACGAAGGGTGGTGACAAATAAACATTTAATTCGGTGTTCGAGAATTTTTTCATAAATATAATTCTAGGTTCTTTTTTTCCAGTGGTGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>219 127 117 101 97 92 90 60 30 23 16 15 13</canonical_bands>
                <polymorphic_bands>320 127 117 97 92 90 60 30 23 16 15 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTAAGATCGAATTTCTCTTACTAT</pcr_primer_p1>
		<pcr_primer_p2>TGCGGACTATGTTGATTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>390</pcr_amplicon_size>
		<canonical_amplicon>CGTAAGATCGAATTTCTCTTACTATTTATTGTCGAATTAAAAAAAAAACACCTGAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTTGAACTACTTTCGCGTTTAAGTTTAGTTTTTTTGCTGAAAAATAGATTCTAGAGATGCTAACGATTATTTTTAGACCAAGAAATCAGAATTTTCGTTCAGAAAATCCCACTAAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGCGCCGTCTCCGAGATTTTCAGGTGTCACTTTTTTTTATCCGACAATAAATTATATTTAAAAATCAACATAGTCCGCA</canonical_amplicon>
		<polymorphic_amplicon>CGTAAGATCGAATTTCTCTTACTATTTATTGTCGAATTAAAAAAAAAACACCTGAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAACGTAATATTYCAGAATTTCGGCTCGTTTGAACTACTTTCGCGTTTAAGTTTAGTTTTTTTGCTGAAAAATAGATTCTAGAGATGCTAACGATTATTTTTAGACCAAGAAATCAGAATTTTCGTTCAGAAAATCCCACTAAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGCGCCGTCTCCGAGATTTTCAGGTGTCACTTTTTTTTATCCGACAATAAATTATATTTAAAAATCAACATAGTCCGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35449</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>42725</contig_pos>
        <strand></strand>
        <context>gctcgtttga[A/G]ctactttcgc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGAAAAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTTGA</left_flank>
        <right_flank>CTACTTTCGCGTTTAAGTTTAGTTTTTTTGCTGAAAAATAGATTCTAGAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAACGACCGGTGGTGGAGCCGAACCAAGACGGAGCGAAACTGGAGAATATTGTGGAGATGGAGAAGAAGCCGAAGCCACTGAACAAGGCGCCGACACCACAGGTCAATCCGATCACCGCCAAAGATGTTTCAGTCGCGATACCGCTTGCGAGCTCGGCGCCGAAATCGAAAAAATCACAAAAGACGAAATTAAAGTTAGAGGCTAGTCCTCCGGTGCATACGGATAAGACACAATCGGACCCGAGGAAAGACGTGGATCCGACACAAATTGGCACTTTGGAGGAGAATCCGGAGACGGTCACGAAGGACAAAGAAGCCGTTAAGAAAGAAGATAGCTCAATGGTGAATTTTTTTTTATTCGACGTAAGATCGAATTTCTCTTACTATTTATTGTCGAATTAAAAAAAAAACACCTGAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTTGAACTACTTTCGCGTTTAAGTTTAGTTTTTTTGCTGAAAAATAGATTCTAGAGATGCTAACGATTATTTTTAGACCAAGAAATCAGAATTTTCGTTCAGAAAATCCCACTAAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGCGCCGTCTCCGAGATTTTCAGGTGTCACTTTTTTTTATCCGACAATAAATTATATTTAAAAATCAACATAGTCCGCAAGTTACTGTAACGGTGTTTGCAGATTTTGCATCAAACTTTACGACATTTCTCTGAAAATTATTTTTCAGAAGAACAAAAATCCATCGACGTCGTTGAAGAAAACGAAAAAGGATGCAACATTTTTTCAGAAAACAACGAAGGGTGGTGACAAATAAACATTTAATTCGGTGTTCGAGAATTTTTTCATAAATATAATTCTAGGTTCTTTTTTTCCAGTGGTGATTCCTGGTTTCAGACAAAAACGT</canonical>
            <polymorphic>CTGAACGACCGGTGGTGGAGCCGAACCAAGACGGAGCGAAACTGGAGAATATTGTGGAGATGGAGAAGAAGCCGAAGCCACTGAACAAGGCGCCGACACCACAGGTCAATCCGATCACCGCCAAAGATGTTTCAGTCGCGATACCGCTTGCGAGCTCGGCGCCGAAATCGAAAAAATCACAAAAGACGAAATTAAAGTTAGAGGCTAGTCCTCCGGTGCATACGGATAAGACACAATCGGACCCGAGGAAAGACGTGGATCCGACACAAATTGGCACTTTGGAGGAGAATCCGGAGACGGTCACGAAGGACAAAGAAGCCGTTAAGAAAGAAGATAGCTCAATGGTGAATTTTTTTTTATTCGACGTAAGATCGAATTTCTCTTACTATTTATTGTCGAATTAAAAAAAAAACACCTGAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTTGARCTACTTTCGCGTTTAAGTTTAGTTTTTTTGCTGAAAAATAGATTCTAGAGATGCTAACGATTATTTTTAGACCAAGAAATCAGAATTTTCGTTCAGAAAATCCCACTAAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGCGCCGTCTCCGAGATTTTCAGGTGTCACTTTTTTTTATCCGACAATAAATTATATTTAAAAATCAACATAGTCCGCAAGTTACTGTAACGGTGTTTGCAGATTTTGCATCAAACTTTACGACATTTCTCTGAAAATTATTTTTCAGAAGAACAAAAATCCATCGACGTCGTTGAAGAAAACGAAAAAGGATGCAACATTTTTTCAGAAAACAACGAAGGGTGGTGACAAATAAACATTTAATTCGGTGTTCGAGAATTTTTTCATAAATATAATTCTAGGTTCTTTTTTTCCAGTGGTGATTCCTGGTTTCAGACAAAAACGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTAAGATCGAATTTCTCTTACTAT</pcr_primer_p1>
		<pcr_primer_p2>TGCGGACTATGTTGATTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>390</pcr_amplicon_size>
		<canonical_amplicon>CGTAAGATCGAATTTCTCTTACTATTTATTGTCGAATTAAAAAAAAAACACCTGAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTTGAACTACTTTCGCGTTTAAGTTTAGTTTTTTTGCTGAAAAATAGATTCTAGAGATGCTAACGATTATTTTTAGACCAAGAAATCAGAATTTTCGTTCAGAAAATCCCACTAAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGCGCCGTCTCCGAGATTTTCAGGTGTCACTTTTTTTTATCCGACAATAAATTATATTTAAAAATCAACATAGTCCGCA</canonical_amplicon>
		<polymorphic_amplicon>CGTAAGATCGAATTTCTCTTACTATTTATTGTCGAATTAAAAAAAAAACACCTGAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTTGARCTACTTTCGCGTTTAAGTTTAGTTTTTTTGCTGAAAAATAGATTCTAGAGATGCTAACGATTATTTTTAGACCAAGAAATCAGAATTTTCGTTCAGAAAATCCCACTAAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGCGCCGTCTCCGAGATTTTCAGGTGTCACTTTTTTTTATCCGACAATAAATTATATTTAAAAATCAACATAGTCCGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35450</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>43112</contig_pos>
        <strand>+</strand>
        <context>TTTTCAGAAA[A/T]CAACGAAGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATCGACGTCGTTGAAGAAAACGAAAAAGGATGCAACATTTTTTCAGAAA</left_flank>
        <right_flank>CAACGAAGGGTGGTGACAAATAAACATTTAATTCGGTGTTCGAGAATTTT</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTATTGTCGAATTAAAAAAAAAACACCTGAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTTGAACTACTTTCGCGTTTAAGTTTAGTTTTTTTGCTGAAAAATAGATTCTAGAGATGCTAACGATTATTTTTAGACCAAGAAATCAGAATTTTCGTTCAGAAAATCCCACTAAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGCGCCGTCTCCGAGATTTTCAGGTGTCACTTTTTTTTATCCGACAATAAATTATATTTAAAAATCAACATAGTCCGCAAGTTACTGTAACGGTGTTTGCAGATTTTGCATCAAACTTTACGACATTTCTCTGAAAATTATTTTTCAGAAGAACAAAAATCCATCGACGTCGTTGAAGAAAACGAAAAAGGATGCAACATTTTTTCAGAAAACAACGAAGGGTGGTGACAAATAAACATTTAATTCGGTGTTCGAGAATTTTTTCATAAATATAATTCTAGGTTCTTTTTTTCCAGTGGTGATTCCTGGTTTCAGACAAAAACGTGGTTATGAATAGGGGTTATAACTTGGGAGGGGGGAGTTATCGAATAAATAGTACATTGATTATTGTGGATTCTGGATGGGGAGAGGGGATGCGGAAGAACATAAGATCGATATAATTCCGGGAGATAAGACACTTTCAGAAAGAAAAAAAAATAAAATTCAATGGCGAATTGGGGAGATCAAGCGACGTCCGTGAAGAGATAAGGATAGGCTCGTTGAATACGAGCAAGAGGCTCAGCACACTGGGGAATAGGACGCACCATTTTGATAACAGTTCTGAAGGATTCCAGAGACTTTCGGAGCAAATCTGCTTGAGTCTCACCGCGACGGTCGGCATCCTGGAATTTTAGGTTTTTAGAACTATTCATAACTAACATAAAAAAGAAAA</canonical>
            <polymorphic>ATTTATTGTCGAATTAAAAAAAAAACACCTGAGAATTTGAAAACTTTTGCTTTTTTTGATCTACGAAAAAGTGCGGCAAAAACGTAATATTTCAGAATTTCGGCTCGTTTGAACTACTTTCGCGTTTAAGTTTAGTTTTTTTGCTGAAAAATAGATTCTAGAGATGCTAACGATTATTTTTAGACCAAGAAATCAGAATTTTCGTTCAGAAAATCCCACTAAATTCACATAAATAAATTTGTTATCTACAGTATCCGTTTTCGCTCCGCCCCCTCGTAAATCGACACGAGCGCCGTCTCCGAGATTTTCAGGTGTCACTTTTTTTTATCCGACAATAAATTATATTTAAAAATCAACATAGTCCGCAAGTTACTGTAACGGTGTTTGCAGATTTTGCATCAAACTTTACGACATTTCTCTGAAAATTATTTTTCAGAAGAACAAAAATCCATCGACGTCGTTGAAGAAAACGAAAAAGGATGCAACATTTTTTCAGAAAWCAACGAAGGGTGGTGACAAATAAACATTTAATTCGGTGTTCGAGAATTTTTTCATAAATATAATTCTAGGTTCTTTTTTTCCAGTGGTGATTCCTGGTTTCAGACAAAAACGTGGTTATGAATAGGGGTTATAACTTGGGAGGGGGGAGTTATCGAATAAATAGTACATTGATTATTGTGGATTCTGGATGGGGAGAGGGGATGCGGAAGAACATAAGATCGATATAATTCCGGGAGATAAGACACTTTCAGAAAGAAAAAAAAATAAAATTCAATGGCGAATTGGGGAGATCAAGCGACGTCCGTGAAGAGATAAGGATAGGCTCGTTGAATACGAGCAAGAGGCTCAGCACACTGGGGAATAGGACGCACCATTTTGATAACAGTTCTGAAGGATTCCAGAGACTTTCGGAGCAAATCTGCTTGAGTCTCACCGCGACGGTCGGCATCCTGGAATTTTAGGTTTTTAGAACTATTCATAACTAACATAAAAAAGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTAAGATCGAATTTCTCTTACTAT</pcr_primer_p1>
		<pcr_primer_p2>TGTCTGAAACCAGGAATCAC</pcr_primer_p2>
		<pcr_amplicon_size>629</pcr_amplicon_size>
		<canonical_amplicon>AACAACGAAGGGTGGTGACAAATAAACATTTAATTCGGTGTTCGAGAATTTTTTCATAAATATAATTCTAGGTTCTTTTTTTCCAGTGGTGATTCCTGGTTTCAGACA</canonical_amplicon>
		<polymorphic_amplicon>AWCAACGAAGGGTGGTGACAAATAAACATTTAATTCGGTGTTCGAGAATTTTTTCATAAATATAATTCTAGGTTCTTTTTTTCCAGTGGTGATTCCTGGTTTCAGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35451</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>45370</contig_pos>
        <strand></strand>
        <context>TTTTGAATAG[G/A]AATCCTGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAGGAAGGCTCTGAAAGGTTTTAGAAGTTCTTATTTCGATTTTTGAATAG</left_flank>
        <right_flank>AATCCTGATTCATCAGCTTCCAAACTCACTTATAAAGTTCACATTGTCTC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTCTGGAGGTGTATCACACTCACGCTCATCGACATCCTCTCCCGCCAGACGACGTGACGCACGGATTCCTTGTTGAAGAATATTCATAGCAGCGTCATCCTCCTCTTCGTCAGCTCCACCAGCTCGTCTCGATTTGCGTGCAGGCGGAGAGCTCTTTCTATTCTTCTTATTCTTGTTCTTCTTCTTCTTCCCCGAATCCTCATCATCGTCAGACGCCAAAAATGATTCTTCTGATTCTGATGAGAGGCTCACTACAGATTCCTCGGGTTCAGATTCGTCGTCATCAATGAAGGCCTCCTCTTCCTCCTGCTCCTCTTTCATCACTCGTTCTCTTTCCATTCGTTGCTCATGAATGATAAGCTGATGAGGATGGGTCCAGATCCGAGAGAACATGTGATAATCCGGTAGAAGACGTTTCGAGAGTCCAGTATCGCCAACGACATCGCTCAGGAAGGCTCTGAAAGGTTTTAGAAGTTCTTATTTCGATTTTTGAATAGGAATCCTGATTCATCAGCTTCCAAACTCACTTATAAAGTTCACATTGTCTCTCGGTAAGACGCACGTTGATCACATATTCTTGCTTCGGCGGAATGGCTTCTGTCAAGACTCGATAGTCTTTTCTCTTTAATTCAGATTTTTTAGAAATTCAGAATTATATTCTAAGAAGATTCTTCTTCAACTTACATCCACACACTTCTTCAAGTGATCATACAACACGTGGCAACGACGCTTCATGAATGACACTTCGAGAGCCGACGCATCCTTGGTACGTCCTCGATTGATAATATTCACAAATCGATTGGCGAACTCGGTTTTCGTTCCCAGCAATCCTGGCTTCACAAAGTTCACCATGCAGTGATCTGCAAATGTTTTTTAAATTATTTCTGGCTCTAAACCAAAAGAAAAAATCTTACACTCCATGAGATTATTCTGCAGTGGGGTTCCTGTCAAACAGATTCGTCGTCTCGTCCGAATCTTCACCATACACTTTGACAACG</canonical>
            <polymorphic>TATTCTGGAGGTGTATCACACTCACGCTCATCGACATCCTCTCCCGCCAGACGACGTGACGCACGGATTCCTTGTTGAAGAATATTCATAGCAGCGTCATCCTCCTCTTCGTCAGCTCCACCAGCTCGTCTCGATTTGCGTGCAGGCGGAGAGCTCTTTCTATTCTTCTTATTCTTGTTCTTCTTCTTCTTCCCCGAATCCTCATCATCGTCAGACGCCAAAAATGATTCTTCTGATTCTGATGAGAGGCTCACTACAGATTCCTCGGGTTCAGATTCGTCGTCATCAATGAAGGCCTCCTCTTCCTCCTGCTCCTCTTTCATCACTCGTTCTCTTTCCATTCGTTGCTCATGAATGATAAGCTGATGAGGATGGGTCCAGATCCGAGAGAACATGTGATAATCCGGTAGAAGACGTTTCGAGAGTCCAGTATCGCCAACGACATCGCTCAGGAAGGCTCTGAAAGGTTTTAGAAGTTCTTATTTCGATTTTTGAATAGRAATCCTGATTCATCAGCTTCCAAACTCACTTATAAAGTTCACATTGTCTCTCGGTAAGACGCACGTTGATCACATATTCTTGCTTCGGCGGAATGGCTTCTGTCAAGACTCGATAGTCTTTTCTCTTTAATTCAGATTTTTTAGAAATTCAGAATTATATTCTAAGAAGATTCTTCTTCAACTTACATCCACACACTTCTTCAAGTGATCATACAACACGTGGCAACGACGCTTCATGAATGACACTTCGAGAGCCGACGCATCCTTGGTACGTCCTCGATTGATAATATTCACAAATCGATTGGCGAACTCGGTTTTCGTTCCCAGCAATCCTGGCTTCACAAAGTTCACCATGCAGTGATCTGCAAATGTTTTTTAAATTATTTCTGGCTCTAAACCAAAAGAAAAAATCTTACACTCCATGAGATTATTCTGCAGTGGGGTTCCTGTCAAACAGATTCGTCGTCTCGTCCGAATCTTCACCATACACTTTGACAACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>288 149 130 100 77 66 62 30 26 24 17 15 9 7</canonical_bands>
                <polymorphic_bands>288 149 130 100 84 66 62 30 26 24 17 15 9</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>288 226 162 130 66 30 26 24 17 15 9 7</canonical_bands>
                <polymorphic_bands>288 233 162 130 66 30 26 24 17 15 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCGAGAGAACATGTGATAAT</pcr_primer_p1>
		<pcr_primer_p2>AAGACTATCGAGTCTTGACAGAA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ATCCGAGAGAACATGTGATAATCCGGTAGAAGACGTTTCGAGAGTCCAGTATCGCCAACGACATCGCTCAGGAAGGCTCTGAAAGGTTTTAGAAGTTCTTATTTCGATTTTTGAATAGGAATCCTGATTCATCAGCTTCCAAACTCACTTATAAAGTTCACATTGTCTCTCGGTAAGACGCACGTTGATCACATATTCTTGCTTCGGCGGAATGGCTTCTGTCAAGACTCGATAGTCTT</canonical_amplicon>
		<polymorphic_amplicon>ATCCGAGAGAACATGTGATAATCCGGTAGAAGACGTTTCGAGAGTCCAGTATCGCCAACGACATCGCTCAGGAAGGCTCTGAAAGGTTTTAGAAGTTCTTATTTCGATTTTTGAATAGRAATCCTGATTCATCAGCTTCCAAACTCACTTATAAAGTTCACATTGTCTCTCGGTAAGACGCACGTTGATCACATATTCTTGCTTCGGCGGAATGGCTTCTGTCAAGACTCGATAGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35452</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>45497</contig_pos>
        <strand></strand>
        <context>TCTTTTCTCT[T/A]TAATTCAGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTCTTGCTTCGGCGGAATGGCTTCTGTCAAGACTCGATAGTCTTTTCTCT</left_flank>
        <right_flank>TAATTCAGATTTTTTAGAAATTCAGAATTATATTCTAAGAAGATTCTTCT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCTCGATTTGCGTGCAGGCGGAGAGCTCTTTCTATTCTTCTTATTCTTGTTCTTCTTCTTCTTCCCCGAATCCTCATCATCGTCAGACGCCAAAAATGATTCTTCTGATTCTGATGAGAGGCTCACTACAGATTCCTCGGGTTCAGATTCGTCGTCATCAATGAAGGCCTCCTCTTCCTCCTGCTCCTCTTTCATCACTCGTTCTCTTTCCATTCGTTGCTCATGAATGATAAGCTGATGAGGATGGGTCCAGATCCGAGAGAACATGTGATAATCCGGTAGAAGACGTTTCGAGAGTCCAGTATCGCCAACGACATCGCTCAGGAAGGCTCTGAAAGGTTTTAGAAGTTCTTATTTCGATTTTTGAATAGGAATCCTGATTCATCAGCTTCCAAACTCACTTATAAAGTTCACATTGTCTCTCGGTAAGACGCACGTTGATCACATATTCTTGCTTCGGCGGAATGGCTTCTGTCAAGACTCGATAGTCTTTTCTCTTTAATTCAGATTTTTTAGAAATTCAGAATTATATTCTAAGAAGATTCTTCTTCAACTTACATCCACACACTTCTTCAAGTGATCATACAACACGTGGCAACGACGCTTCATGAATGACACTTCGAGAGCCGACGCATCCTTGGTACGTCCTCGATTGATAATATTCACAAATCGATTGGCGAACTCGGTTTTCGTTCCCAGCAATCCTGGCTTCACAAAGTTCACCATGCAGTGATCTGCAAATGTTTTTTAAATTATTTCTGGCTCTAAACCAAAAGAAAAAATCTTACACTCCATGAGATTATTCTGCAGTGGGGTTCCTGTCAAACAGATTCGTCGTCTCGTCCGAATCTTCACCATACACTTTGACAACGCCGAATCATCGTTCTTCAGTTTGTGAGCCTCGTCACAAACGATCATATCCGGTCCTGGATCCTGAAGATACTTTCGGAAGTCCTCTTTGGCCTTGGACATTTTTCTGCTCAACTTGGTTTTCTTCTT</canonical>
            <polymorphic>GTCTCGATTTGCGTGCAGGCGGAGAGCTCTTTCTATTCTTCTTATTCTTGTTCTTCTTCTTCTTCCCCGAATCCTCATCATCGTCAGACGCCAAAAATGATTCTTCTGATTCTGATGAGAGGCTCACTACAGATTCCTCGGGTTCAGATTCGTCGTCATCAATGAAGGCCTCCTCTTCCTCCTGCTCCTCTTTCATCACTCGTTCTCTTTCCATTCGTTGCTCATGAATGATAAGCTGATGAGGATGGGTCCAGATCCGAGAGAACATGTGATAATCCGGTAGAAGACGTTTCGAGAGTCCAGTATCGCCAACGACATCGCTCAGGAAGGCTCTGAAAGGTTTTAGAAGTTCTTATTTCGATTTTTGAATAGGAATCCTGATTCATCAGCTTCCAAACTCACTTATAAAGTTCACATTGTCTCTCGGTAAGACGCACGTTGATCACATATTCTTGCTTCGGCGGAATGGCTTCTGTCAAGACTCGATAGTCTTTTCTCTWTAATTCAGATTTTTTAGAAATTCAGAATTATATTCTAAGAAGATTCTTCTTCAACTTACATCCACACACTTCTTCAAGTGATCATACAACACGTGGCAACGACGCTTCATGAATGACACTTCGAGAGCCGACGCATCCTTGGTACGTCCTCGATTGATAATATTCACAAATCGATTGGCGAACTCGGTTTTCGTTCCCAGCAATCCTGGCTTCACAAAGTTCACCATGCAGTGATCTGCAAATGTTTTTTAAATTATTTCTGGCTCTAAACCAAAAGAAAAAATCTTACACTCCATGAGATTATTCTGCAGTGGGGTTCCTGTCAAACAGATTCGTCGTCTCGTCCGAATCTTCACCATACACTTTGACAACGCCGAATCATCGTTCTTCAGTTTGTGAGCCTCGTCACAAACGATCATATCCGGTCCTGGATCCTGAAGATACTTTCGGAAGTCCTCTTTGGCCTTGGACATTTTTCTGCTCAACTTGGTTTTCTTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>500 251 249</canonical_bands>
                <polymorphic_bands>749 251</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGTTCTTATTTCGATTTTTGA</pcr_primer_p1>
		<pcr_primer_p2>GTGTTGTATGATCACTTGAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAGTTCTTATTTCGATTTTTGAATAGGAATCCTGATTCATCAGCTTCCAAACTCACTTATAAAGTTCACATTGTCTCTCGGTAAGACGCACGTTGATCACATATTCTTGCTTCGGCGGAATGGCTTCTGTCAAGACTCGATAGTCTTTTCTCTTTAATTCAGATTTTTTAGAAATTCAGAATTATATTCTAAGAAGATTCTTCTTCAACTTACATCCACACACTTCTTCAAGTGATCATACAACAC</canonical_amplicon>
		<polymorphic_amplicon>GAAGTTCTTATTTCGATTTTTGAATAGGAATCCTGATTCATCAGCTTCCAAACTCACTTATAAAGTTCACATTGTCTCTCGGTAAGACGCACGTTGATCACATATTCTTGCTTCGGCGGAATGGCTTCTGTCAAGACTCGATAGTCTTTTCTCTWTAATTCAGATTTTTTAGAAATTCAGAATTATATTCTAAGAAGATTCTTCTTCAACTTACATCCACACACTTCTTCAAGTGATCATACAACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35453</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>56472</contig_pos>
        <strand>+</strand>
        <context>ATCAGTTGCT[C/T]TAACGACGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAGTTTCTTCCTTTGAATCATAATAGATGCTACACGATTATCAGTTGCT</left_flank>
        <right_flank>TAACGACGTATGTGTGGCTGGTGATTGGATCCGTATTGGGCTTAGCGTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGAAAATCCGAAATCCCCCAAAAACGGCGTTGAAAAGGAAGAAAATTCAAAAAAACGTGCCCCCGGGGGACGAGGATTTTCAATGAGAAACCTNNNNNNNNNNCGCCAGGTAAAAACGTAAAAAACCCCCTGTCGGTGACTGGAAAAAAAGGCTGTCAGGTGCCGTGCCCTAGGTTTCTCGCTGAAAATCCTCGTTCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGCCGTTTTTCGGGGATTTCGGATTTTCTTTGAATTTTTTCGCAATAATATTCGAAAAATAGATAAATTTTAACACATTTTGATGCAATAAAAATTTTTGGTCGGAGTCCCCCTTTAATAGTTCAAGAGCTGATAATCGGAAAACTTCTTAATTAACAATTAATCCATCATTCTCAAAAACTCTTCCTCTGTTTTGTCCCATACTCCAAACCAGAGTTTCTTCCTTTGAATCATAATAGATGCTACACGATTATCAGTTGCTCTAACGACGTATGTGTGGCTGGTGATTGGATCCGTATTGGGCTTAGCGTGTTTAAAATGCATATTGTATCTGAAAAATAATTGGTTGTTTTAAAGCTATTCCAATCAAAAAAATAAACAACTTACGTTTTCGGTAGAGTGTGTGTTGGTGGTTGTTTTGTTTTATCTATATGTTTTAATCCAATGGCATCCAGAAATCGGTTATCGGGGGTTTTATTCATTTTCATTTCCAAGTACTATAGCTTTTGCGATGCTTCTCCTGATTTCCATTTATTCACAAACTCAATCAAGTGCGAAGTTTTGTGATTATAGCATTCTATGACAACCTGTCTTCCTTGAAAATGGCGTAAAATTGCAGAAGCAGTGATTAGGTCTTGGGTGATTTCAATAGATTCTGCCTGATAGAACTTGGAATCTGTATTGAATGATTCTGTGAAAAGCACGACGTCCATATTAATCGATTTCGACACAGGGGAGGAGGAGAAAAAGTTTTCAGCTTGTT</canonical>
            <polymorphic>AAAGAAAATCCGAAATCCCCCAAAAACGGCGTTGAAAAGGAAGAAAATTCAAAAAAACGTGCCCCCGGGGGACGAGGATTTTCAATGAGAAACCTNNNNNNNNNNCGCCAGGTAAAAACGTAAAAAACCCCCTGTCGGTGACTGGAAAAAAAGGCTGTCAGGTGCCGTGCCCTAGGTTTCTCGCTGAAAATCCTCGTTCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGCCGTTTTTCGGGGATTTCGGATTTTCTTTGAATTTTTTCGCAATAATATTCGAAAAATAGATAAATTTTAACACATTTTGATGCAATAAAAATTTTTGGTCGGAGTCCCCCTTTAATAGTTCAAGAGCTGATAATCGGAAAACTTCTTAATTAACAATTAATCCATCATTCTCAAAAACTCTTCCTCTGTTTTGTCCCATACTCCAAACCAGAGTTTCTTCCTTTGAATCATAATAGATGCTACACGATTATCAGTTGCTYTAACGACGTATGTGTGGCTGGTGATTGGATCCGTATTGGGCTTAGCGTGTTTAAAATGCATATTGTATCTGAAAAATAATTGGTTGTTTTAAAGCTATTCCAATCAAAAAAATAAACAACTTACGTTTTCGGTAGAGTGTGTGTTGGTGGTTGTTTTGTTTTATCTATATGTTTTAATCCAATGGCATCCAGAAATCGGTTATCGGGGGTTTTATTCATTTTCATTTCCAAGTACTATAGCTTTTGCGATGCTTCTCCTGATTTCCATTTATTCACAAACTCAATCAAGTGCGAAGTTTTGTGATTATAGCATTCTATGACAACCTGTCTTCCTTGAAAATGGCGTAAAATTGCAGAAGCAGTGATTAGGTCTTGGGTGATTTCAATAGATTCTGCCTGATAGAACTTGGAATCTGTATTGAATGATTCTGTGAAAAGCACGACGTCCATATTAATCGATTTCGACACAGGGGAGGAGGAGAAAAAGTTTTCAGCTTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACTCCAAACCAGAGTTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>GCCATTGGATTAAAACATATAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATACTCCAAACCAGAGTTTCTTCCTTTGAATCATAATAGATGCTACACGATTATCAGTTGCTCTAACGACGTATGTGTGGCTGGTGATTGGATCCGTATTGGGCTTAGCGTGTTTAAAATGCATATTGTATCTGAAAAATAATTGGTTGTTTTAAAGCTATTCCAATCAAAAAAATAAACAACTTACGTTTTCGGTAGAGTGTGTGTTGGTGGTTGTTTTGTTTTATCTATATGTTTTAATCCAATGGC</canonical_amplicon>
		<polymorphic_amplicon>ATACTCCAAACCAGAGTTTCTTCCTTTGAATCATAATAGATGCTACACGATTATCAGTTGCTYTAACGACGTATGTGTGGCTGGTGATTGGATCCGTATTGGGCTTAGCGTGTTTAAAATGCATATTGTATCTGAAAAATAATTGGTTGTTTTAAAGCTATTCCAATCAAAAAAATAAACAACTTACGTTTTCGGTAGAGTGTGTGTTGGTGGTTGTTTTGTTTTATCTATATGTTTTAATCCAATGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35454</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>56889</contig_pos>
        <strand>+</strand>
        <context>TTGGAATCTG[G/T]ATTGAATGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAGGTCTTGGGTGATTTCAATAGATTCTGCCTGATAGAACTTGGAATCTG</left_flank>
        <right_flank>ATTGAATGATTCTGTGAAAAGCACGACGTCCATATTAATCGATTTCGACA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTTCCTCTGTTTTGTCCCATACTCCAAACCAGAGTTTCTTCCTTTGAATCATAATAGATGCTACACGATTATCAGTTGCTCTAACGACGTATGTGTGGCTGGTGATTGGATCCGTATTGGGCTTAGCGTGTTTAAAATGCATATTGTATCTGAAAAATAATTGGTTGTTTTAAAGCTATTCCAATCAAAAAAATAAACAACTTACGTTTTCGGTAGAGTGTGTGTTGGTGGTTGTTTTGTTTTATCTATATGTTTTAATCCAATGGCATCCAGAAATCGGTTATCGGGGGTTTTATTCATTTTCATTTCCAAGTACTATAGCTTTTGCGATGCTTCTCCTGATTTCCATTTATTCACAAACTCAATCAAGTGCGAAGTTTTGTGATTATAGCATTCTATGACAACCTGTCTTCCTTGAAAATGGCGTAAAATTGCAGAAGCAGTGATTAGGTCTTGGGTGATTTCAATAGATTCTGCCTGATAGAACTTGGAATCTGTATTGAATGATTCTGTGAAAAGCACGACGTCCATATTAATCGATTTCGACACAGGGGAGGAGGAGAAAAAGTTTTCAGCTTGTTCCTTGTGCAAAAATTGTGCGGTTCTGAAATTATCCGGAAAAAGGCGTAAATGAACACAAAAAGATACATTTTGGAGTGGCGGAATGAAAGGAATAAAAAGCTCTTGACGAAATTTGAAGTCATATGATTGCCAATTATATTCCACTGTTGACAAAAATCCGGGTTCCCCGCAGATAATTGTCAACCTGAAAGCAGAGTAACTCAGGGTCTACCGATTTTCCCCGCAAAATCCCCCTGAATTACTTGCTTTCATTATTCATTCACTATTTTCCCTTAGTTCCGATATTATTCTGTGAAATTATTCTTTCTCGCATTCATTCAATGCGAATATTCATATTTGAATTACCACTCCTTTTACCCTTTTGAAGGCGCACCCGCGTGGCGAGACCCGCGACGCCAGCCGACAGGCGCCGCGCA</canonical>
            <polymorphic>CTCTTCCTCTGTTTTGTCCCATACTCCAAACCAGAGTTTCTTCCTTTGAATCATAATAGATGCTACACGATTATCAGTTGCTCTAACGACGTATGTGTGGCTGGTGATTGGATCCGTATTGGGCTTAGCGTGTTTAAAATGCATATTGTATCTGAAAAATAATTGGTTGTTTTAAAGCTATTCCAATCAAAAAAATAAACAACTTACGTTTTCGGTAGAGTGTGTGTTGGTGGTTGTTTTGTTTTATCTATATGTTTTAATCCAATGGCATCCAGAAATCGGTTATCGGGGGTTTTATTCATTTTCATTTCCAAGTACTATAGCTTTTGCGATGCTTCTCCTGATTTCCATTTATTCACAAACTCAATCAAGTGCGAAGTTTTGTGATTATAGCATTCTATGACAACCTGTCTTCCTTGAAAATGGCGTAAAATTGCAGAAGCAGTGATTAGGTCTTGGGTGATTTCAATAGATTCTGCCTGATAGAACTTGGAATCTGKATTGAATGATTCTGTGAAAAGCACGACGTCCATATTAATCGATTTCGACACAGGGGAGGAGGAGAAAAAGTTTTCAGCTTGTTCCTTGTGCAAAAATTGTGCGGTTCTGAAATTATCCGGAAAAAGGCGTAAATGAACACAAAAAGATACATTTTGGAGTGGCGGAATGAAAGGAATAAAAAGCTCTTGACGAAATTTGAAGTCATATGATTGCCAATTATATTCCACTGTTGACAAAAATCCGGGTTCCCCGCAGATAATTGTCAACCTGAAAGCAGAGTAACTCAGGGTCTACCGATTTTCCCCGCAAAATCCCCCTGAATTACTTGCTTTCATTATTCATTCACTATTTTCCCTTAGTTCCGATATTATTCTGTGAAATTATTCTTTCTCGCATTCATTCAATGCGAATATTCATATTTGAATTACCACTCCTTTTACCCTTTTGAAGGCGCACCCGCGTGGCGAGACCCGCGACGCCAGCCGACAGGCGCCGCGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGATTTCCATTTATTCACAAAC</pcr_primer_p1>
		<pcr_primer_p2>ACAAGGAACAAGCTGAAAACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTGATTTCCATTTATTCACAAACTCAATCAAGTGCGAAGTTTTGTGATTATAGCATTCTATGACAACCTGTCTTCCTTGAAAATGGCGTAAAATTGCAGAAGCAGTGATTAGGTCTTGGGTGATTTCAATAGATTCTGCCTGATAGAACTTGGAATCTGTATTGAATGATTCTGTGAAAAGCACGACGTCCATATTAATCGATTTCGACACAGGGGAGGAGGAGAAAAAGTTTTCAGCTTGTTCCTTGT</canonical_amplicon>
		<polymorphic_amplicon>CTGATTTCCATTTATTCACAAACTCAATCAAGTGCGAAGTTTTGTGATTATAGCATTCTATGACAACCTGTCTTCCTTGAAAATGGCGTAAAATTGCAGAAGCAGTGATTAGGTCTTGGGTGATTTCAATAGATTCTGCCTGATAGAACTTGGAATCTGKATTGAATGATTCTGTGAAAAGCACGACGTCCATATTAATCGATTTCGACACAGGGGAGGAGGAGAAAAAGTTTTCAGCTTGTTCCTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35455</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>61461</contig_pos>
        <strand></strand>
        <context>ATGGAGTCAG[T/C]CGGATTTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAG</left_flank>
        <right_flank>CGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTAGTATAGTAAGGGAGGATTATAGTACCGTTTCCGTTTTTCACCATTTTTTGAAATCTCCAGATTCCCCCCATATTTCCACACTTTCTCTTCTATTTCCTTGAATTATCAAAACAATTAGCTGAAAAACGCCATTTTAGGCGAGCATGAAAATCGTACTCCGAGTGCGAAAATAATACCACTTTTCCCATTTTAAAAAACCCCTCCAAATGGAAGGGTTTTAGGCAAATTCTTGATAAAATCATCAAAAACTTTGAATAACTTCAAAAGAAAAAAACACTGTCCCTCATCCCGCTGACGTCTATTATGACAGGTGGGCTGTCATGTTTAAAAAAACCCTTTACTTCTTTCCATCTTCATACGTCACCAGTAGTAGGGAATTGTCCTCTCTGGTGCAGTTTTCTGCCCACTTTTTAAAAATTTTTATTTTGCTGTTTTTTCAAGTTTTTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTGCCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACCGTACGTGAATAGAGCAAACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGATGTCAAGCCTATCAAAATTACTCCGAAAACTCAAAAAATTCTTGCCTAAAACCCTTCCATTTGGAGGGGTTTTTTAAAA</canonical>
            <polymorphic>CAGTAGTATAGTAAGGGAGGATTATAGTACCGTTTCCGTTTTTCACCATTTTTTGAAATCTCCAGATTCCCCCCATATTTCCACACTTTCTCTTCTATTTCCTTGAATTATCAAAACAATTAGCTGAAAAACGCCATTTTAGGCGAGCATGAAAATCGTACTCCGAGTGCGAAAATAATACCACTTTTCCCATTTTAAAAAACCCCTCCAAATGGAAGGGTTTTAGGCAAATTCTTGATAAAATCATCAAAAACTTTGAATAACTTCAAAAGAAAAAAACACTGTCCCTCATCCCGCTGACGTCTATTATGACAGGTGGGCTGTCATGTTTAAAAAAACCCTTTACTTCTTTCCATCTTCATACGTCACCAGTAGTAGGGAATTGTCCTCTCTGGTGCAGTTTTCTGCCCACTTTTTAAAAATTTTTATTTTGCTGTTTTTTCAAGTTTTTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGYCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTGCCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACCGTACGTGAATAGAGCAAACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGATGTCAAGCCTATCAAAATTACTCCGAAAACTCAAAAAATTCTTGCCTAAAACCCTTCCATTTGGAGGGGTTTTTTAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>338 164 161 154 128 55</canonical_bands>
                <polymorphic_bands>492 164 161 128 55</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCATACGTCACCAGTAGTAGG</pcr_primer_p1>
		<pcr_primer_p2>AGCAAGTATTTGTACACCATTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTTCATACGTCACCAGTAGTAGGGAATTGTCCTCTCTGGTGCAGTTTTCTGCCCACTTTTTAAAAATTTTTATTTTGCTGTTTTTTCAAGTTTTTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCT</canonical_amplicon>
		<polymorphic_amplicon>CTTCATACGTCACCAGTAGTAGGGAATTGTCCTCTCTGGTGCAGTTTTCTGCCCACTTTTTAAAAATTTTTATTTTGCTGTTTTTTCAAGTTTTTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGYCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35456</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>61500</contig_pos>
        <strand></strand>
        <context>ATTTATTGAA[A/C]AAGCGCTCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAA</left_flank>
        <right_flank>AAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCACCATTTTTTGAAATCTCCAGATTCCCCCCATATTTCCACACTTTCTCTTCTATTTCCTTGAATTATCAAAACAATTAGCTGAAAAACGCCATTTTAGGCGAGCATGAAAATCGTACTCCGAGTGCGAAAATAATACCACTTTTCCCATTTTAAAAAACCCCTCCAAATGGAAGGGTTTTAGGCAAATTCTTGATAAAATCATCAAAAACTTTGAATAACTTCAAAAGAAAAAAACACTGTCCCTCATCCCGCTGACGTCTATTATGACAGGTGGGCTGTCATGTTTAAAAAAACCCTTTACTTCTTTCCATCTTCATACGTCACCAGTAGTAGGGAATTGTCCTCTCTGGTGCAGTTTTCTGCCCACTTTTTAAAAATTTTTATTTTGCTGTTTTTTCAAGTTTTTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTGCCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACCGTACGTGAATAGAGCAAACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGATGTCAAGCCTATCAAAATTACTCCGAAAACTCAAAAAATTCTTGCCTAAAACCCTTCCATTTGGAGGGGTTTTTTAAAATGGGAAAAGTGGTATTATTTTCGCACTCGGAGTACGATT</canonical>
            <polymorphic>TTTTCACCATTTTTTGAAATCTCCAGATTCCCCCCATATTTCCACACTTTCTCTTCTATTTCCTTGAATTATCAAAACAATTAGCTGAAAAACGCCATTTTAGGCGAGCATGAAAATCGTACTCCGAGTGCGAAAATAATACCACTTTTCCCATTTTAAAAAACCCCTCCAAATGGAAGGGTTTTAGGCAAATTCTTGATAAAATCATCAAAAACTTTGAATAACTTCAAAAGAAAAAAACACTGTCCCTCATCCCGCTGACGTCTATTATGACAGGTGGGCTGTCATGTTTAAAAAAACCCTTTACTTCTTTCCATCTTCATACGTCACCAGTAGTAGGGAATTGTCCTCTCTGGTGCAGTTTTCTGCCCACTTTTTAAAAATTTTTATTTTGCTGTTTTTTCAAGTTTTTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAMAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTGCCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACCGTACGTGAATAGAGCAAACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGATGTCAAGCCTATCAAAATTACTCCGAAAACTCAAAAAATTCTTGCCTAAAACCCTTCCATTTGGAGGGGTTTTTTAAAATGGGAAAAGTGGTATTATTTTCGCACTCGGAGTACGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCATACGTCACCAGTAGTAGG</pcr_primer_p1>
		<pcr_primer_p2>AGCAAGTATTTGTACACCATTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTTCATACGTCACCAGTAGTAGGGAATTGTCCTCTCTGGTGCAGTTTTCTGCCCACTTTTTAAAAATTTTTATTTTGCTGTTTTTTCAAGTTTTTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCT</canonical_amplicon>
		<polymorphic_amplicon>CTTCATACGTCACCAGTAGTAGGGAATTGTCCTCTCTGGTGCAGTTTTCTGCCCACTTTTTAAAAATTTTTATTTTGCTGTTTTTTCAAGTTTTTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAMAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35457</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>61571</contig_pos>
        <strand></strand>
        <context>ATACTTGCTG[C/T]CTTATCAGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTG</left_flank>
        <right_flank>CTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAAACAATTAGCTGAAAAACGCCATTTTAGGCGAGCATGAAAATCGTACTCCGAGTGCGAAAATAATACCACTTTTCCCATTTTAAAAAACCCCTCCAAATGGAAGGGTTTTAGGCAAATTCTTGATAAAATCATCAAAAACTTTGAATAACTTCAAAAGAAAAAAACACTGTCCCTCATCCCGCTGACGTCTATTATGACAGGTGGGCTGTCATGTTTAAAAAAACCCTTTACTTCTTTCCATCTTCATACGTCACCAGTAGTAGGGAATTGTCCTCTCTGGTGCAGTTTTCTGCCCACTTTTTAAAAATTTTTATTTTGCTGTTTTTTCAAGTTTTTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTGCCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACCGTACGTGAATAGAGCAAACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGATGTCAAGCCTATCAAAATTACTCCGAAAACTCAAAAAATTCTTGCCTAAAACCCTTCCATTTGGAGGGGTTTTTTAAAATGGGAAAAGTGGTATTATTTTCGCACTCGGAGTACGATTTTCATGCTCGCCTAAAATGGCTTTTTTCAGCTAATTGTTTTGATAATTCAAGGAAATAGAAGAGAAAGTGT</canonical>
            <polymorphic>TCAAAACAATTAGCTGAAAAACGCCATTTTAGGCGAGCATGAAAATCGTACTCCGAGTGCGAAAATAATACCACTTTTCCCATTTTAAAAAACCCCTCCAAATGGAAGGGTTTTAGGCAAATTCTTGATAAAATCATCAAAAACTTTGAATAACTTCAAAAGAAAAAAACACTGTCCCTCATCCCGCTGACGTCTATTATGACAGGTGGGCTGTCATGTTTAAAAAAACCCTTTACTTCTTTCCATCTTCATACGTCACCAGTAGTAGGGAATTGTCCTCTCTGGTGCAGTTTTCTGCCCACTTTTTAAAAATTTTTATTTTGCTGTTTTTTCAAGTTTTTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTGYCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACCGTACGTGAATAGAGCAAACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGATGTCAAGCCTATCAAAATTACTCCGAAAACTCAAAAAATTCTTGCCTAAAACCCTTCCATTTGGAGGGGTTTTTTAAAATGGGAAAAGTGGTATTATTTTCGCACTCGGAGTACGATTTTCATGCTCGCCTAAAATGGCTTTTTTCAGCTAATTGTTTTGATAATTCAAGGAAATAGAAGAGAAAGTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACTCTTAGCAACATTCACGAT</pcr_primer_p1>
		<pcr_primer_p2>TCATATGAGTGTTGTTTGCTCTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTGCCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACCGTACGTGAATAGAGCAAACAACACTCATATGA</canonical_amplicon>
		<polymorphic_amplicon>TTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTGYCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACCGTACGTGAATAGAGCAAACAACACTCATATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35458</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>61621</contig_pos>
        <strand></strand>
        <context>GGTATCAGAC[C/T]GTACGTGAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGAC</left_flank>
        <right_flank>GTACGTGAATAGAGCAAACAACACTCATATGAAGAGAGCTGTGAGTCATG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCGAGTGCGAAAATAATACCACTTTTCCCATTTTAAAAAACCCCTCCAAATGGAAGGGTTTTAGGCAAATTCTTGATAAAATCATCAAAAACTTTGAATAACTTCAAAAGAAAAAAACACTGTCCCTCATCCCGCTGACGTCTATTATGACAGGTGGGCTGTCATGTTTAAAAAAACCCTTTACTTCTTTCCATCTTCATACGTCACCAGTAGTAGGGAATTGTCCTCTCTGGTGCAGTTTTCTGCCCACTTTTTAAAAATTTTTATTTTGCTGTTTTTTCAAGTTTTTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTGCCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACCGTACGTGAATAGAGCAAACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGATGTCAAGCCTATCAAAATTACTCCGAAAACTCAAAAAATTCTTGCCTAAAACCCTTCCATTTGGAGGGGTTTTTTAAAATGGGAAAAGTGGTATTATTTTCGCACTCGGAGTACGATTTTCATGCTCGCCTAAAATGGCTTTTTTCAGCTAATTGTTTTGATAATTCAAGGAAATAGAAGAGAAAGTGTGGAAATATGGGGGGAATCTGGAGATTTCAAAAAATGGTGAAAAACGGAAA</canonical>
            <polymorphic>CTCCGAGTGCGAAAATAATACCACTTTTCCCATTTTAAAAAACCCCTCCAAATGGAAGGGTTTTAGGCAAATTCTTGATAAAATCATCAAAAACTTTGAATAACTTCAAAAGAAAAAAACACTGTCCCTCATCCCGCTGACGTCTATTATGACAGGTGGGCTGTCATGTTTAAAAAAACCCTTTACTTCTTTCCATCTTCATACGTCACCAGTAGTAGGGAATTGTCCTCTCTGGTGCAGTTTTCTGCCCACTTTTTAAAAATTTTTATTTTGCTGTTTTTTCAAGTTTTTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTGCCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACYGTACGTGAATAGAGCAAACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGATGTCAAGCCTATCAAAATTACTCCGAAAACTCAAAAAATTCTTGCCTAAAACCCTTCCATTTGGAGGGGTTTTTTAAAATGGGAAAAGTGGTATTATTTTCGCACTCGGAGTACGATTTTCATGCTCGCCTAAAATGGCTTTTTTCAGCTAATTGTTTTGATAATTCAAGGAAATAGAAGAGAAAGTGTGGAAATATGGGGGGAATCTGGAGATTTCAAAAAATGGTGAAAAACGGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGTACG</site>
                <isoschizomers>
                    <enzyme>BsiWI</enzyme>
                    <enzyme>Pfl23II</enzyme>
                    <enzyme>PspLI</enzyme>
                    <enzyme>SplI</enzyme>
                    <enzyme>SunI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTCTAACCACTGAGCTACAAC</pcr_primer_p1>
		<pcr_primer_p2>TTACACTTGAAACAGAATATCTCC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTGCCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACCGTACGTGAATAGAGCAAACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAA</canonical_amplicon>
		<polymorphic_amplicon>GCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTGCCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACYGTACGTGAATAGAGCAAACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35459</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>61701</contig_pos>
        <strand></strand>
        <context>TTAAATATTC[A/T]TTCAAYTTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTC</left_flank>
        <right_flank>TTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCATCAAAAACTTTGAATAACTTCAAAAGAAAAAAACACTGTCCCTCATCCCGCTGACGTCTATTATGACAGGTGGGCTGTCATGTTTAAAAAAACCCTTTACTTCTTTCCATCTTCATACGTCACCAGTAGTAGGGAATTGTCCTCTCTGGTGCAGTTTTCTGCCCACTTTTTAAAAATTTTTATTTTGCTGTTTTTTCAAGTTTTTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTGCCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACCGTACGTGAATAGAGCAAACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGATGTCAAGCCTATCAAAATTACTCCGAAAACTCAAAAAATTCTTGCCTAAAACCCTTCCATTTGGAGGGGTTTTTTAAAATGGGAAAAGTGGTATTATTTTCGCACTCGGAGTACGATTTTCATGCTCGCCTAAAATGGCTTTTTTCAGCTAATTGTTTTGATAATTCAAGGAAATAGAAGAGAAAGTGTGGAAATATGGGGGGAATCTGGAGATTTCAAAAAATGGTGAAAAACGGAAACGGTACTATAATCCTCCCTTACTATACTACTATTGACTCTTCATCTGGTTTTGAGACTCCAGCAAAGTTTTGCTTTGATC</canonical>
            <polymorphic>AAATCATCAAAAACTTTGAATAACTTCAAAAGAAAAAAACACTGTCCCTCATCCCGCTGACGTCTATTATGACAGGTGGGCTGTCATGTTTAAAAAAACCCTTTACTTCTTTCCATCTTCATACGTCACCAGTAGTAGGGAATTGTCCTCTCTGGTGCAGTTTTCTGCCCACTTTTTAAAAATTTTTATTTTGCTGTTTTTTCAAGTTTTTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTGCCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACCGTACGTGAATAGAGCAAACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCWTTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGATGTCAAGCCTATCAAAATTACTCCGAAAACTCAAAAAATTCTTGCCTAAAACCCTTCCATTTGGAGGGGTTTTTTAAAATGGGAAAAGTGGTATTATTTTCGCACTCGGAGTACGATTTTCATGCTCGCCTAAAATGGCTTTTTTCAGCTAATTGTTTTGATAATTCAAGGAAATAGAAGAGAAAGTGTGGAAATATGGGGGGAATCTGGAGATTTCAAAAAATGGTGAAAAACGGAAACGGTACTATAATCCTCCCTTACTATACTACTATTGACTCTTCATCTGGTTTTGAGACTCCAGCAAAGTTTTGCTTTGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAACACTCATATGAAGAGAGC</pcr_primer_p1>
		<pcr_primer_p2>ATCTCCACCATGTGTTAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGAT</canonical_amplicon>
		<polymorphic_amplicon>AACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCWTTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35460</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>61707</contig_pos>
        <strand></strand>
        <context>ATTCWTTCAA[C/T]TTATTTGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAA</left_flank>
        <right_flank>TTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAAACTTTGAATAACTTCAAAAGAAAAAAACACTGTCCCTCATCCCGCTGACGTCTATTATGACAGGTGGGCTGTCATGTTTAAAAAAACCCTTTACTTCTTTCCATCTTCATACGTCACCAGTAGTAGGGAATTGTCCTCTCTGGTGCAGTTTTCTGCCCACTTTTTAAAAATTTTTATTTTGCTGTTTTTTCAAGTTTTTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTGCCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACCGTACGTGAATAGAGCAAACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGATGTCAAGCCTATCAAAATTACTCCGAAAACTCAAAAAATTCTTGCCTAAAACCCTTCCATTTGGAGGGGTTTTTTAAAATGGGAAAAGTGGTATTATTTTCGCACTCGGAGTACGATTTTCATGCTCGCCTAAAATGGCTTTTTTCAGCTAATTGTTTTGATAATTCAAGGAAATAGAAGAGAAAGTGTGGAAATATGGGGGGAATCTGGAGATTTCAAAAAATGGTGAAAAACGGAAACGGTACTATAATCCTCCCTTACTATACTACTATTGACTCTTCATCTGGTTTTGAGACTCCAGCAAAGTTTTGCTTTGATCAAGTCG</canonical>
            <polymorphic>TCAAAAACTTTGAATAACTTCAAAAGAAAAAAACACTGTCCCTCATCCCGCTGACGTCTATTATGACAGGTGGGCTGTCATGTTTAAAAAAACCCTTTACTTCTTTCCATCTTCATACGTCACCAGTAGTAGGGAATTGTCCTCTCTGGTGCAGTTTTCTGCCCACTTTTTAAAAATTTTTATTTTGCTGTTTTTTCAAGTTTTTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTGCCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACCGTACGTGAATAGAGCAAACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAAYTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGATGTCAAGCCTATCAAAATTACTCCGAAAACTCAAAAAATTCTTGCCTAAAACCCTTCCATTTGGAGGGGTTTTTTAAAATGGGAAAAGTGGTATTATTTTCGCACTCGGAGTACGATTTTCATGCTCGCCTAAAATGGCTTTTTTCAGCTAATTGTTTTGATAATTCAAGGAAATAGAAGAGAAAGTGTGGAAATATGGGGGGAATCTGGAGATTTCAAAAAATGGTGAAAAACGGAAACGGTACTATAATCCTCCCTTACTATACTACTATTGACTCTTCATCTGGTTTTGAGACTCCAGCAAAGTTTTGCTTTGATCAAGTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAACACTCATATGAAGAGAGC</pcr_primer_p1>
		<pcr_primer_p2>ATCTCCACCATGTGTTAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGAT</canonical_amplicon>
		<polymorphic_amplicon>AACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAAYTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35461</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>61757</contig_pos>
        <strand></strand>
        <context>GTAAAGTATT[C/T]ACTGRTACKA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATT</left_flank>
        <right_flank>ACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGACGTCTATTATGACAGGTGGGCTGTCATGTTTAAAAAAACCCTTTACTTCTTTCCATCTTCATACGTCACCAGTAGTAGGGAATTGTCCTCTCTGGTGCAGTTTTCTGCCCACTTTTTAAAAATTTTTATTTTGCTGTTTTTTCAAGTTTTTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTGCCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACCGTACGTGAATAGAGCAAACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGATGTCAAGCCTATCAAAATTACTCCGAAAACTCAAAAAATTCTTGCCTAAAACCCTTCCATTTGGAGGGGTTTTTTAAAATGGGAAAAGTGGTATTATTTTCGCACTCGGAGTACGATTTTCATGCTCGCCTAAAATGGCTTTTTTCAGCTAATTGTTTTGATAATTCAAGGAAATAGAAGAGAAAGTGTGGAAATATGGGGGGAATCTGGAGATTTCAAAAAATGGTGAAAAACGGAAACGGTACTATAATCCTCCCTTACTATACTACTATTGACTCTTCATCTGGTTTTGAGACTCCAGCAAAGTTTTGCTTTGATCAAGTCGGTGATAAGGCCTGCCACGAGCCTGGATGTCCTGAACTATAGTTTATTCGA</canonical>
            <polymorphic>CTGACGTCTATTATGACAGGTGGGCTGTCATGTTTAAAAAAACCCTTTACTTCTTTCCATCTTCATACGTCACCAGTAGTAGGGAATTGTCCTCTCTGGTGCAGTTTTCTGCCCACTTTTTAAAAATTTTTATTTTGCTGTTTTTTCAAGTTTTTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTGCCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACCGTACGTGAATAGAGCAAACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTYACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGATGTCAAGCCTATCAAAATTACTCCGAAAACTCAAAAAATTCTTGCCTAAAACCCTTCCATTTGGAGGGGTTTTTTAAAATGGGAAAAGTGGTATTATTTTCGCACTCGGAGTACGATTTTCATGCTCGCCTAAAATGGCTTTTTTCAGCTAATTGTTTTGATAATTCAAGGAAATAGAAGAGAAAGTGTGGAAATATGGGGGGAATCTGGAGATTTCAAAAAATGGTGAAAAACGGAAACGGTACTATAATCCTCCCTTACTATACTACTATTGACTCTTCATCTGGTTTTGAGACTCCAGCAAAGTTTTGCTTTGATCAAGTCGGTGATAAGGCCTGCCACGAGCCTGGATGTCCTGAACTATAGTTTATTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>100 94 85 84 83 66 57 50 43 41 38 35 34 30 29 22 20 16 14 14 13 11 7 5 5 2 2</canonical_bands>
                <polymorphic_bands>100 94 85 84 83 77 57 50 43 41 38 35 34 30 29 22 20 16 14 14 13 7 5 5 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAACACTCATATGAAGAGAGC</pcr_primer_p1>
		<pcr_primer_p2>ATCTCCACCATGTGTTAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGAT</canonical_amplicon>
		<polymorphic_amplicon>AACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTYACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35462</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>61762</contig_pos>
        <strand></strand>
        <context>GTATTYACTG[A/G]TACKAATAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTG</left_flank>
        <right_flank>TACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTATTATGACAGGTGGGCTGTCATGTTTAAAAAAACCCTTTACTTCTTTCCATCTTCATACGTCACCAGTAGTAGGGAATTGTCCTCTCTGGTGCAGTTTTCTGCCCACTTTTTAAAAATTTTTATTTTGCTGTTTTTTCAAGTTTTTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTGCCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACCGTACGTGAATAGAGCAAACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGATGTCAAGCCTATCAAAATTACTCCGAAAACTCAAAAAATTCTTGCCTAAAACCCTTCCATTTGGAGGGGTTTTTTAAAATGGGAAAAGTGGTATTATTTTCGCACTCGGAGTACGATTTTCATGCTCGCCTAAAATGGCTTTTTTCAGCTAATTGTTTTGATAATTCAAGGAAATAGAAGAGAAAGTGTGGAAATATGGGGGGAATCTGGAGATTTCAAAAAATGGTGAAAAACGGAAACGGTACTATAATCCTCCCTTACTATACTACTATTGACTCTTCATCTGGTTTTGAGACTCCAGCAAAGTTTTGCTTTGATCAAGTCGGTGATAAGGCCTGCCACGAGCCTGGATGTCCTGAACTATAGTTTATTCGATGCTC</canonical>
            <polymorphic>GTCTATTATGACAGGTGGGCTGTCATGTTTAAAAAAACCCTTTACTTCTTTCCATCTTCATACGTCACCAGTAGTAGGGAATTGTCCTCTCTGGTGCAGTTTTCTGCCCACTTTTTAAAAATTTTTATTTTGCTGTTTTTTCAAGTTTTTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTGCCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACCGTACGTGAATAGAGCAAACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGRTACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGATGTCAAGCCTATCAAAATTACTCCGAAAACTCAAAAAATTCTTGCCTAAAACCCTTCCATTTGGAGGGGTTTTTTAAAATGGGAAAAGTGGTATTATTTTCGCACTCGGAGTACGATTTTCATGCTCGCCTAAAATGGCTTTTTTCAGCTAATTGTTTTGATAATTCAAGGAAATAGAAGAGAAAGTGTGGAAATATGGGGGGAATCTGGAGATTTCAAAAAATGGTGAAAAACGGAAACGGTACTATAATCCTCCCTTACTATACTACTATTGACTCTTCATCTGGTTTTGAGACTCCAGCAAAGTTTTGCTTTGATCAAGTCGGTGATAAGGCCTGCCACGAGCCTGGATGTCCTGAACTATAGTTTATTCGATGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAACACTCATATGAAGAGAGC</pcr_primer_p1>
		<pcr_primer_p2>ATCTCCACCATGTGTTAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGAT</canonical_amplicon>
		<polymorphic_amplicon>AACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGRTACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35463</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>61766</contig_pos>
        <strand></strand>
        <context>TYACTGRTAC[G/T]AATAATWTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATAC</left_flank>
        <right_flank>AATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATGACAGGTGGGCTGTCATGTTTAAAAAAACCCTTTACTTCTTTCCATCTTCATACGTCACCAGTAGTAGGGAATTGTCCTCTCTGGTGCAGTTTTCTGCCCACTTTTTAAAAATTTTTATTTTGCTGTTTTTTCAAGTTTTTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTGCCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACCGTACGTGAATAGAGCAAACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGATGTCAAGCCTATCAAAATTACTCCGAAAACTCAAAAAATTCTTGCCTAAAACCCTTCCATTTGGAGGGGTTTTTTAAAATGGGAAAAGTGGTATTATTTTCGCACTCGGAGTACGATTTTCATGCTCGCCTAAAATGGCTTTTTTCAGCTAATTGTTTTGATAATTCAAGGAAATAGAAGAGAAAGTGTGGAAATATGGGGGGAATCTGGAGATTTCAAAAAATGGTGAAAAACGGAAACGGTACTATAATCCTCCCTTACTATACTACTATTGACTCTTCATCTGGTTTTGAGACTCCAGCAAAGTTTTGCTTTGATCAAGTCGGTGATAAGGCCTGCCACGAGCCTGGATGTCCTGAACTATAGTTTATTCGATGCTCTCGT</canonical>
            <polymorphic>ATTATGACAGGTGGGCTGTCATGTTTAAAAAAACCCTTTACTTCTTTCCATCTTCATACGTCACCAGTAGTAGGGAATTGTCCTCTCTGGTGCAGTTTTCTGCCCACTTTTTAAAAATTTTTATTTTGCTGTTTTTTCAAGTTTTTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTGCCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACCGTACGTGAATAGAGCAAACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACKAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGATGTCAAGCCTATCAAAATTACTCCGAAAACTCAAAAAATTCTTGCCTAAAACCCTTCCATTTGGAGGGGTTTTTTAAAATGGGAAAAGTGGTATTATTTTCGCACTCGGAGTACGATTTTCATGCTCGCCTAAAATGGCTTTTTTCAGCTAATTGTTTTGATAATTCAAGGAAATAGAAGAGAAAGTGTGGAAATATGGGGGGAATCTGGAGATTTCAAAAAATGGTGAAAAACGGAAACGGTACTATAATCCTCCCTTACTATACTACTATTGACTCTTCATCTGGTTTTGAGACTCCAGCAAAGTTTTGCTTTGATCAAGTCGGTGATAAGGCCTGCCACGAGCCTGGATGTCCTGAACTATAGTTTATTCGATGCTCTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAACACTCATATGAAGAGAGC</pcr_primer_p1>
		<pcr_primer_p2>ATCTCCACCATGTGTTAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGAT</canonical_amplicon>
		<polymorphic_amplicon>AACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACKAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35464</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>61773</contig_pos>
        <strand></strand>
        <context>TACKAATAAT[A/T]TATCTGAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAAT</left_flank>
        <right_flank>TATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGGTGGGCTGTCATGTTTAAAAAAACCCTTTACTTCTTTCCATCTTCATACGTCACCAGTAGTAGGGAATTGTCCTCTCTGGTGCAGTTTTCTGCCCACTTTTTAAAAATTTTTATTTTGCTGTTTTTTCAAGTTTTTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTGCCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACCGTACGTGAATAGAGCAAACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGATGTCAAGCCTATCAAAATTACTCCGAAAACTCAAAAAATTCTTGCCTAAAACCCTTCCATTTGGAGGGGTTTTTTAAAATGGGAAAAGTGGTATTATTTTCGCACTCGGAGTACGATTTTCATGCTCGCCTAAAATGGCTTTTTTCAGCTAATTGTTTTGATAATTCAAGGAAATAGAAGAGAAAGTGTGGAAATATGGGGGGAATCTGGAGATTTCAAAAAATGGTGAAAAACGGAAACGGTACTATAATCCTCCCTTACTATACTACTATTGACTCTTCATCTGGTTTTGAGACTCCAGCAAAGTTTTGCTTTGATCAAGTCGGTGATAAGGCCTGCCACGAGCCTGGATGTCCTGAACTATAGTTTATTCGATGCTCTCGTTGCAAAG</canonical>
            <polymorphic>CAGGTGGGCTGTCATGTTTAAAAAAACCCTTTACTTCTTTCCATCTTCATACGTCACCAGTAGTAGGGAATTGTCCTCTCTGGTGCAGTTTTCTGCCCACTTTTTAAAAATTTTTATTTTGCTGTTTTTTCAAGTTTTTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTGCCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACCGTACGTGAATAGAGCAAACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATWTATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGATGTCAAGCCTATCAAAATTACTCCGAAAACTCAAAAAATTCTTGCCTAAAACCCTTCCATTTGGAGGGGTTTTTTAAAATGGGAAAAGTGGTATTATTTTCGCACTCGGAGTACGATTTTCATGCTCGCCTAAAATGGCTTTTTTCAGCTAATTGTTTTGATAATTCAAGGAAATAGAAGAGAAAGTGTGGAAATATGGGGGGAATCTGGAGATTTCAAAAAATGGTGAAAAACGGAAACGGTACTATAATCCTCCCTTACTATACTACTATTGACTCTTCATCTGGTTTTGAGACTCCAGCAAAGTTTTGCTTTGATCAAGTCGGTGATAAGGCCTGCCACGAGCCTGGATGTCCTGAACTATAGTTTATTCGATGCTCTCGTTGCAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAACACTCATATGAAGAGAGC</pcr_primer_p1>
		<pcr_primer_p2>ATCTCCACCATGTGTTAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGAT</canonical_amplicon>
		<polymorphic_amplicon>AACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATWTATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35465</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>61814</contig_pos>
        <strand></strand>
        <context>AAATGATCAA[G/A]GGAAACTGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAA</left_flank>
        <right_flank>GGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCTTCATACGTCACCAGTAGTAGGGAATTGTCCTCTCTGGTGCAGTTTTCTGCCCACTTTTTAAAAATTTTTATTTTGCTGTTTTTTCAAGTTTTTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTGCCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACCGTACGTGAATAGAGCAAACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGATGTCAAGCCTATCAAAATTACTCCGAAAACTCAAAAAATTCTTGCCTAAAACCCTTCCATTTGGAGGGGTTTTTTAAAATGGGAAAAGTGGTATTATTTTCGCACTCGGAGTACGATTTTCATGCTCGCCTAAAATGGCTTTTTTCAGCTAATTGTTTTGATAATTCAAGGAAATAGAAGAGAAAGTGTGGAAATATGGGGGGAATCTGGAGATTTCAAAAAATGGTGAAAAACGGAAACGGTACTATAATCCTCCCTTACTATACTACTATTGACTCTTCATCTGGTTTTGAGACTCCAGCAAAGTTTTGCTTTGATCAAGTCGGTGATAAGGCCTGCCACGAGCCTGGATGTCCTGAACTATAGTTTATTCGATGCTCTCGTTGCAAAGAATACATTTGTTTTAACCATTTTATTGTAGTAGATAAGCAT</canonical>
            <polymorphic>CATCTTCATACGTCACCAGTAGTAGGGAATTGTCCTCTCTGGTGCAGTTTTCTGCCCACTTTTTAAAAATTTTTATTTTGCTGTTTTTTCAAGTTTTTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTGCCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACCGTACGTGAATAGAGCAAACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAARGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGATGTCAAGCCTATCAAAATTACTCCGAAAACTCAAAAAATTCTTGCCTAAAACCCTTCCATTTGGAGGGGTTTTTTAAAATGGGAAAAGTGGTATTATTTTCGCACTCGGAGTACGATTTTCATGCTCGCCTAAAATGGCTTTTTTCAGCTAATTGTTTTGATAATTCAAGGAAATAGAAGAGAAAGTGTGGAAATATGGGGGGAATCTGGAGATTTCAAAAAATGGTGAAAAACGGAAACGGTACTATAATCCTCCCTTACTATACTACTATTGACTCTTCATCTGGTTTTGAGACTCCAGCAAAGTTTTGCTTTGATCAAGTCGGTGATAAGGCCTGCCACGAGCCTGGATGTCCTGAACTATAGTTTATTCGATGCTCTCGTTGCAAAGAATACATTTGTTTTAACCATTTTATTGTAGTAGATAAGCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAACACTCATATGAAGAGAGC</pcr_primer_p1>
		<pcr_primer_p2>ATCTCCACCATGTGTTAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGAT</canonical_amplicon>
		<polymorphic_amplicon>AACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAARGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35466</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>61827</contig_pos>
        <strand></strand>
        <context>AAACTGTGTA[G/A]YGTGTAMCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTA</left_flank>
        <right_flank>TGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACCAGTAGTAGGGAATTGTCCTCTCTGGTGCAGTTTTCTGCCCACTTTTTAAAAATTTTTATTTTGCTGTTTTTTCAAGTTTTTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTGCCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACCGTACGTGAATAGAGCAAACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGATGTCAAGCCTATCAAAATTACTCCGAAAACTCAAAAAATTCTTGCCTAAAACCCTTCCATTTGGAGGGGTTTTTTAAAATGGGAAAAGTGGTATTATTTTCGCACTCGGAGTACGATTTTCATGCTCGCCTAAAATGGCTTTTTTCAGCTAATTGTTTTGATAATTCAAGGAAATAGAAGAGAAAGTGTGGAAATATGGGGGGAATCTGGAGATTTCAAAAAATGGTGAAAAACGGAAACGGTACTATAATCCTCCCTTACTATACTACTATTGACTCTTCATCTGGTTTTGAGACTCCAGCAAAGTTTTGCTTTGATCAAGTCGGTGATAAGGCCTGCCACGAGCCTGGATGTCCTGAACTATAGTTTATTCGATGCTCTCGTTGCAAAGAATACATTTGTTTTAACCATTTTATTGTAGTAGATAAGCATTTATGTCCGCATA</canonical>
            <polymorphic>CACCAGTAGTAGGGAATTGTCCTCTCTGGTGCAGTTTTCTGCCCACTTTTTAAAAATTTTTATTTTGCTGTTTTTTCAAGTTTTTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTGCCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACCGTACGTGAATAGAGCAAACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTARTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGATGTCAAGCCTATCAAAATTACTCCGAAAACTCAAAAAATTCTTGCCTAAAACCCTTCCATTTGGAGGGGTTTTTTAAAATGGGAAAAGTGGTATTATTTTCGCACTCGGAGTACGATTTTCATGCTCGCCTAAAATGGCTTTTTTCAGCTAATTGTTTTGATAATTCAAGGAAATAGAAGAGAAAGTGTGGAAATATGGGGGGAATCTGGAGATTTCAAAAAATGGTGAAAAACGGAAACGGTACTATAATCCTCCCTTACTATACTACTATTGACTCTTCATCTGGTTTTGAGACTCCAGCAAAGTTTTGCTTTGATCAAGTCGGTGATAAGGCCTGCCACGAGCCTGGATGTCCTGAACTATAGTTTATTCGATGCTCTCGTTGCAAAGAATACATTTGTTTTAACCATTTTATTGTAGTAGATAAGCATTTATGTCCGCATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>104 100 94 85 84 83 66 57 43 41 38 35 30 29 20 16 14 14 13 11 7 5 5 2 2 2</canonical_bands>
                <polymorphic_bands>104 100 94 85 84 83 66 57 43 41 38 35 30 29 20 16 14 14 13 11 7 7 5 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAACACTCATATGAAGAGAGC</pcr_primer_p1>
		<pcr_primer_p2>ATCTCCACCATGTGTTAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGAT</canonical_amplicon>
		<polymorphic_amplicon>AACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTARTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35467</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>61828</contig_pos>
        <strand></strand>
        <context>AACTGTGTAR[T/C]GTGTAMCACA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAG</left_flank>
        <right_flank>GTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCAGTAGTAGGGAATTGTCCTCTCTGGTGCAGTTTTCTGCCCACTTTTTAAAAATTTTTATTTTGCTGTTTTTTCAAGTTTTTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTGCCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACCGTACGTGAATAGAGCAAACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGATGTCAAGCCTATCAAAATTACTCCGAAAACTCAAAAAATTCTTGCCTAAAACCCTTCCATTTGGAGGGGTTTTTTAAAATGGGAAAAGTGGTATTATTTTCGCACTCGGAGTACGATTTTCATGCTCGCCTAAAATGGCTTTTTTCAGCTAATTGTTTTGATAATTCAAGGAAATAGAAGAGAAAGTGTGGAAATATGGGGGGAATCTGGAGATTTCAAAAAATGGTGAAAAACGGAAACGGTACTATAATCCTCCCTTACTATACTACTATTGACTCTTCATCTGGTTTTGAGACTCCAGCAAAGTTTTGCTTTGATCAAGTCGGTGATAAGGCCTGCCACGAGCCTGGATGTCCTGAACTATAGTTTATTCGATGCTCTCGTTGCAAAGAATACATTTGTTTTAACCATTTTATTGTAGTAGATAAGCATTTATGTCCGCATAA</canonical>
            <polymorphic>ACCAGTAGTAGGGAATTGTCCTCTCTGGTGCAGTTTTCTGCCCACTTTTTAAAAATTTTTATTTTGCTGTTTTTTCAAGTTTTTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTGCCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACCGTACGTGAATAGAGCAAACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGYGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGATGTCAAGCCTATCAAAATTACTCCGAAAACTCAAAAAATTCTTGCCTAAAACCCTTCCATTTGGAGGGGTTTTTTAAAATGGGAAAAGTGGTATTATTTTCGCACTCGGAGTACGATTTTCATGCTCGCCTAAAATGGCTTTTTTCAGCTAATTGTTTTGATAATTCAAGGAAATAGAAGAGAAAGTGTGGAAATATGGGGGGAATCTGGAGATTTCAAAAAATGGTGAAAAACGGAAACGGTACTATAATCCTCCCTTACTATACTACTATTGACTCTTCATCTGGTTTTGAGACTCCAGCAAAGTTTTGCTTTGATCAAGTCGGTGATAAGGCCTGCCACGAGCCTGGATGTCCTGAACTATAGTTTATTCGATGCTCTCGTTGCAAAGAATACATTTGTTTTAACCATTTTATTGTAGTAGATAAGCATTTATGTCCGCATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>105 100 94 85 84 83 66 57 43 41 38 35 30 30 20 16 14 14 13 11 7 5 5 2 2</canonical_bands>
                <polymorphic_bands>105 100 94 85 84 83 66 57 43 41 38 35 30 30 20 16 14 14 13 11 7 7 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAACACTCATATGAAGAGAGC</pcr_primer_p1>
		<pcr_primer_p2>ATCTCCACCATGTGTTAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGAT</canonical_amplicon>
		<polymorphic_amplicon>AACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGYGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35468</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>61834</contig_pos>
        <strand></strand>
        <context>GTARYGTGTA[A/C]CACAACTAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTA</left_flank>
        <right_flank>CACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGATG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTAGGGAATTGTCCTCTCTGGTGCAGTTTTCTGCCCACTTTTTAAAAATTTTTATTTTGCTGTTTTTTCAAGTTTTTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTGCCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACCGTACGTGAATAGAGCAAACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGATGTCAAGCCTATCAAAATTACTCCGAAAACTCAAAAAATTCTTGCCTAAAACCCTTCCATTTGGAGGGGTTTTTTAAAATGGGAAAAGTGGTATTATTTTCGCACTCGGAGTACGATTTTCATGCTCGCCTAAAATGGCTTTTTTCAGCTAATTGTTTTGATAATTCAAGGAAATAGAAGAGAAAGTGTGGAAATATGGGGGGAATCTGGAGATTTCAAAAAATGGTGAAAAACGGAAACGGTACTATAATCCTCCCTTACTATACTACTATTGACTCTTCATCTGGTTTTGAGACTCCAGCAAAGTTTTGCTTTGATCAAGTCGGTGATAAGGCCTGCCACGAGCCTGGATGTCCTGAACTATAGTTTATTCGATGCTCTCGTTGCAAAGAATACATTTGTTTTAACCATTTTATTGTAGTAGATAAGCATTTATGTCCGCATAAATAAAC</canonical>
            <polymorphic>AGTAGGGAATTGTCCTCTCTGGTGCAGTTTTCTGCCCACTTTTTAAAAATTTTTATTTTGCTGTTTTTTCAAGTTTTTACTCTTAGCAACATTCACGATTTTCAAACGCTCTTTCAATGGAGTCAGTCGGATTTGAACCAACGCATGGGTTAATCATTTATTGAAAAAGCGCTCTAACCACTGAGCTACAACCCCAATCTAGAAAACGCCCTGAAATGGTGTACAAATACTTGCTGCCTTATCAGTTTGTGTATTTTGAGGAGCATAGAACATTCAGGTATCAGACCGTACGTGAATAGAGCAAACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAMCACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGATGTCAAGCCTATCAAAATTACTCCGAAAACTCAAAAAATTCTTGCCTAAAACCCTTCCATTTGGAGGGGTTTTTTAAAATGGGAAAAGTGGTATTATTTTCGCACTCGGAGTACGATTTTCATGCTCGCCTAAAATGGCTTTTTTCAGCTAATTGTTTTGATAATTCAAGGAAATAGAAGAGAAAGTGTGGAAATATGGGGGGAATCTGGAGATTTCAAAAAATGGTGAAAAACGGAAACGGTACTATAATCCTCCCTTACTATACTACTATTGACTCTTCATCTGGTTTTGAGACTCCAGCAAAGTTTTGCTTTGATCAAGTCGGTGATAAGGCCTGCCACGAGCCTGGATGTCCTGAACTATAGTTTATTCGATGCTCTCGTTGCAAAGAATACATTTGTTTTAACCATTTTATTGTAGTAGATAAGCATTTATGTCCGCATAAATAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAACACTCATATGAAGAGAGC</pcr_primer_p1>
		<pcr_primer_p2>GACATCTCCACCATGTGTTAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAACACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGATGTC</canonical_amplicon>
		<polymorphic_amplicon>AACAACACTCATATGAAGAGAGCTGTGAGTCATGAACTGACCATGACGTTTTTTTAAATATTCATTCAACTTATTTGTTTTCATTAAATGGAGATATTCTGTTTCAAGTGTAAAGTATTCACTGATACGAATAATATATCTGAAATACTAACCAAAAATAATAAACAAATGATCAAGGGAAACTGTGTAGTGTGTAMCACAACTAAATGTAGATTAAATTCAAAAAAACTAACACATGGTGGAGATGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35469</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>91704</contig_pos>
        <strand></strand>
        <context>aaacctataa[T/G]agaagagctc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GAGTTTCTTTTTTTAATTCAAGAAAATACTAATTAGCGTAAAACCTATAA</left_flank>
        <right_flank>AGAAGAGCTCCACACTGTCAAGTTTGAGCCCATATACCTCGGTTCTTGTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGAGCAACCAGTGCCACGCCATCCGACAAAGCCAAACGAGCCGAGACAATTGCATCGAGACGATCTCTCTCCTCATGATCACGTCTCTTCTGTTCCTCTTCAGCCTCTGCCGCTTCCTTCTGCTTCTCGAGTTCCAGTTGCATCTCGTACTCTTTTTGCGCCTTCTCACGCTCCTCCTCCATCTTGCGACGTCTTCAAAAATCAGTTTGATTGACCAATCAATGTTTTAAAGTTTGGTATTCATCACAAAATTTAAAAACCTCAGAATTTCCCAGCCAAGTTCATTTCAAAAACTCACAAAAGTCTCTCCTGCTCCGCAGCGGCCTTCTCCTCCAGCTCGCGACGTTCCTTCTCTTCGGCTTCTCGGCGTGCACGCTCCACCTCAGCGAGTTCGTCATTTTCCAATTGTTGTCTGCAATTTTGATGGATACTGTACTTTGAATAAAAGAGTTTCTTTTTTTAATTCAAGAAAATACTAATTAGCGTAAAACCTATAATAGAAGAGCTCCACACTGTCAAGTTTGAGCCCATATACCTCGGTTCTTGTAGCAGTTATCAAAAGGCGGTCAACTGATAAAACGTTTGTGATGTTATGATAAACAATTTATCAGTTAACAACTTTTCGAAATCTGTCACGGGAAGCGAGAAAAATTGACTCAAAGTTAAAAGTTGAAAAAAAAACAAACTTCAAATCGGCAATAATCGAATCAACTCTGGCGACACACTCCTCGTAACACTTGACAGCTCGATCAATCTCCTCCTCCAAATCGTCGTTTTTGATCCGCTTGACGAGCTCTTCGAGTTCGGAAGTCGTCGAATCGGCCGCTTGTCTCCATTTGTCCTGACTCGTCTCGTTCATACGAGCCAAAATCTAAAGCAAAATTGCTCATTTTTCAATTTCCATAAAACCTCTAATAGAAGGGCACTGATACATTGAGCCAATTTTTCTCGCTTTCCGTCAATGATATAAAAAAGTTGTCAACTGATAAGTTGTTCAT</canonical>
            <polymorphic>CCTGAGCAACCAGTGCCACGCCATCCGACAAAGCCAAACGAGCCGAGACAATTGCATCGAGACGATCTCTCTCCTCATGATCACGTCTCTTCTGTTCCTCTTCAGCCTCTGCCGCTTCCTTCTGCTTCTCGAGTTCCAGTTGCATCTCGTACTCTTTTTGCGCCTTCTCACGCTCCTCCTCCATCTTGCGACGTCTTCAAAAATCAGTTTGATTGACCAATCAATGTTTTAAAGTTTGGTATTCATCACAAAATTTAAAAACCTCAGAATTTCCCAGCCAAGTTCATTTCAAAAACTCACAAAAGTCTCTCCTGCTCCGCAGCGGCCTTCTCCTCCAGCTCGCGACGTTCCTTCTCTTCGGCTTCTCGGCGTGCACGCTCCACCTCAGCGAGTTCGTCATTTTCCAATTGTTGTCTGCAATTTTGATGGATACTGTACTTTGAATAAAAGAGTTTCTTTTTTTAATTCAAGAAAATACTAATTAGCGTAAAACCTATAAKAGAAGAGCTCCACACTGTCAAGTTTGAGCCCATATACCTCGGTTCTTGTAGCAGTTATCAAAAGGCGGTCAACTGATAAAACGTTTGTGATGTTATGATAAACAATTTATCAGTTAACAACTTTTCGAAATCTGTCACGGGAAGCGAGAAAAATTGACTCAAAGTTAAAAGTTGAAAAAAAAACAAACTTCAAATCGGCAATAATCGAATCAACTCTGGCGACACACTCCTCGTAACACTTGACAGCTCGATCAATCTCCTCCTCCAAATCGTCGTTTTTGATCCGCTTGACGAGCTCTTCGAGTTCGGAAGTCGTCGAATCGGCCGCTTGTCTCCATTTGTCCTGACTCGTCTCGTTCATACGAGCCAAAATCTAAAGCAAAATTGCTCATTTTTCAATTTCCATAAAACCTCTAATAGAAGGGCACTGATACATTGAGCCAATTTTTCTCGCTTTCCGTCAATGATATAAAAAAGTTGTCAACTGATAAGTTGTTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGATACTGTACTTTGAATAAAAGAG</pcr_primer_p1>
		<pcr_primer_p2>CCGATTTGAAGTTTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>TGGATACTGTACTTTGAATAAAAGAGTTTCTTTTTTTAATTCAAGAAAATACTAATTAGCGTAAAACCTATAATAGAAGAGCTCCACACTGTCAAGTTTGAGCCCATATACCTCGGTTCTTGTAGCAGTTATCAAAAGGCGGTCAACTGATAAAACGTTTGTGATGTTATGATAAACAATTTATCAGTTAACAACTTTTCGAAATCTGTCACGGGAAGCGAGAAAAATTGACTCAAAGTTAAAAGTTGAAAAAAAAACAAACTTCAAATCGG</canonical_amplicon>
		<polymorphic_amplicon>TGGATACTGTACTTTGAATAAAAGAGTTTCTTTTTTTAATTCAAGAAAATACTAATTAGCGTAAAACCTATAAKAGAAGAGCTCCACACTGTCAAGTTTGAGCCCATATACCTCGGTTCTTGTAGCAGTTATCAAAAGGCGGTCAACTGATAAAACGTTTGTGATGTTATGATAAACAATTTATCAGTTAACAACTTTTCGAAATCTGTCACGGGAAGCGAGAAAAATTGACTCAAAGTTAAAAGTTGAAAAAAAAACAAACTTCAAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35470</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>91727</contig_pos>
        <strand></strand>
        <context>cactgtcaag[T/C]ttgagcccat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAATACTAATTAGCGTAAAACCTATAATAGAAGAGCTCCACACTGTCAAG</left_flank>
        <right_flank>TTGAGCCCATATACCTCGGTTCTTGTAGCAGTTATCAAAAGGCGGTCAAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCGACAAAGCCAAACGAGCCGAGACAATTGCATCGAGACGATCTCTCTCCTCATGATCACGTCTCTTCTGTTCCTCTTCAGCCTCTGCCGCTTCCTTCTGCTTCTCGAGTTCCAGTTGCATCTCGTACTCTTTTTGCGCCTTCTCACGCTCCTCCTCCATCTTGCGACGTCTTCAAAAATCAGTTTGATTGACCAATCAATGTTTTAAAGTTTGGTATTCATCACAAAATTTAAAAACCTCAGAATTTCCCAGCCAAGTTCATTTCAAAAACTCACAAAAGTCTCTCCTGCTCCGCAGCGGCCTTCTCCTCCAGCTCGCGACGTTCCTTCTCTTCGGCTTCTCGGCGTGCACGCTCCACCTCAGCGAGTTCGTCATTTTCCAATTGTTGTCTGCAATTTTGATGGATACTGTACTTTGAATAAAAGAGTTTCTTTTTTTAATTCAAGAAAATACTAATTAGCGTAAAACCTATAATAGAAGAGCTCCACACTGTCAAGTTTGAGCCCATATACCTCGGTTCTTGTAGCAGTTATCAAAAGGCGGTCAACTGATAAAACGTTTGTGATGTTATGATAAACAATTTATCAGTTAACAACTTTTCGAAATCTGTCACGGGAAGCGAGAAAAATTGACTCAAAGTTAAAAGTTGAAAAAAAAACAAACTTCAAATCGGCAATAATCGAATCAACTCTGGCGACACACTCCTCGTAACACTTGACAGCTCGATCAATCTCCTCCTCCAAATCGTCGTTTTTGATCCGCTTGACGAGCTCTTCGAGTTCGGAAGTCGTCGAATCGGCCGCTTGTCTCCATTTGTCCTGACTCGTCTCGTTCATACGAGCCAAAATCTAAAGCAAAATTGCTCATTTTTCAATTTCCATAAAACCTCTAATAGAAGGGCACTGATACATTGAGCCAATTTTTCTCGCTTTCCGTCAATGATATAAAAAAGTTGTCAACTGATAAGTTGTTCATCAAATCGATATCTTTCACAAAAA</canonical>
            <polymorphic>TCCGACAAAGCCAAACGAGCCGAGACAATTGCATCGAGACGATCTCTCTCCTCATGATCACGTCTCTTCTGTTCCTCTTCAGCCTCTGCCGCTTCCTTCTGCTTCTCGAGTTCCAGTTGCATCTCGTACTCTTTTTGCGCCTTCTCACGCTCCTCCTCCATCTTGCGACGTCTTCAAAAATCAGTTTGATTGACCAATCAATGTTTTAAAGTTTGGTATTCATCACAAAATTTAAAAACCTCAGAATTTCCCAGCCAAGTTCATTTCAAAAACTCACAAAAGTCTCTCCTGCTCCGCAGCGGCCTTCTCCTCCAGCTCGCGACGTTCCTTCTCTTCGGCTTCTCGGCGTGCACGCTCCACCTCAGCGAGTTCGTCATTTTCCAATTGTTGTCTGCAATTTTGATGGATACTGTACTTTGAATAAAAGAGTTTCTTTTTTTAATTCAAGAAAATACTAATTAGCGTAAAACCTATAATAGAAGAGCTCCACACTGTCAAGYTTGAGCCCATATACCTCGGTTCTTGTAGCAGTTATCAAAAGGCGGTCAACTGATAAAACGTTTGTGATGTTATGATAAACAATTTATCAGTTAACAACTTTTCGAAATCTGTCACGGGAAGCGAGAAAAATTGACTCAAAGTTAAAAGTTGAAAAAAAAACAAACTTCAAATCGGCAATAATCGAATCAACTCTGGCGACACACTCCTCGTAACACTTGACAGCTCGATCAATCTCCTCCTCCAAATCGTCGTTTTTGATCCGCTTGACGAGCTCTTCGAGTTCGGAAGTCGTCGAATCGGCCGCTTGTCTCCATTTGTCCTGACTCGTCTCGTTCATACGAGCCAAAATCTAAAGCAAAATTGCTCATTTTTCAATTTCCATAAAACCTCTAATAGAAGGGCACTGATACATTGAGCCAATTTTTCTCGCTTTCCGTCAATGATATAAAAAAGTTGTCAACTGATAAGTTGTTCATCAAATCGATATCTTTCACAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGATACTGTACTTTGAATAAAAGAG</pcr_primer_p1>
		<pcr_primer_p2>CCGATTTGAAGTTTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>TGGATACTGTACTTTGAATAAAAGAGTTTCTTTTTTTAATTCAAGAAAATACTAATTAGCGTAAAACCTATAATAGAAGAGCTCCACACTGTCAAGTTTGAGCCCATATACCTCGGTTCTTGTAGCAGTTATCAAAAGGCGGTCAACTGATAAAACGTTTGTGATGTTATGATAAACAATTTATCAGTTAACAACTTTTCGAAATCTGTCACGGGAAGCGAGAAAAATTGACTCAAAGTTAAAAGTTGAAAAAAAAACAAACTTCAAATCGG</canonical_amplicon>
		<polymorphic_amplicon>TGGATACTGTACTTTGAATAAAAGAGTTTCTTTTTTTAATTCAAGAAAATACTAATTAGCGTAAAACCTATAATAGAAGAGCTCCACACTGTCAAGYTTGAGCCCATATACCTCGGTTCTTGTAGCAGTTATCAAAAGGCGGTCAACTGATAAAACGTTTGTGATGTTATGATAAACAATTTATCAGTTAACAACTTTTCGAAATCTGTCACGGGAAGCGAGAAAAATTGACTCAAAGTTAAAAGTTGAAAAAAAAACAAACTTCAAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35471</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>91833</contig_pos>
        <strand></strand>
        <context>aacttttcga[A/T]atctgtcacg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAACGTTTGTGATGTTATGATAAACAATTTATCAGTTAACAACTTTTCGA</left_flank>
        <right_flank>ATCTGTCACGGGAAGCGAGAAAAATTGACTCAAAGTTAAAAGTTGAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAGTTCCAGTTGCATCTCGTACTCTTTTTGCGCCTTCTCACGCTCCTCCTCCATCTTGCGACGTCTTCAAAAATCAGTTTGATTGACCAATCAATGTTTTAAAGTTTGGTATTCATCACAAAATTTAAAAACCTCAGAATTTCCCAGCCAAGTTCATTTCAAAAACTCACAAAAGTCTCTCCTGCTCCGCAGCGGCCTTCTCCTCCAGCTCGCGACGTTCCTTCTCTTCGGCTTCTCGGCGTGCACGCTCCACCTCAGCGAGTTCGTCATTTTCCAATTGTTGTCTGCAATTTTGATGGATACTGTACTTTGAATAAAAGAGTTTCTTTTTTTAATTCAAGAAAATACTAATTAGCGTAAAACCTATAATAGAAGAGCTCCACACTGTCAAGTTTGAGCCCATATACCTCGGTTCTTGTAGCAGTTATCAAAAGGCGGTCAACTGATAAAACGTTTGTGATGTTATGATAAACAATTTATCAGTTAACAACTTTTCGAAATCTGTCACGGGAAGCGAGAAAAATTGACTCAAAGTTAAAAGTTGAAAAAAAAACAAACTTCAAATCGGCAATAATCGAATCAACTCTGGCGACACACTCCTCGTAACACTTGACAGCTCGATCAATCTCCTCCTCCAAATCGTCGTTTTTGATCCGCTTGACGAGCTCTTCGAGTTCGGAAGTCGTCGAATCGGCCGCTTGTCTCCATTTGTCCTGACTCGTCTCGTTCATACGAGCCAAAATCTAAAGCAAAATTGCTCATTTTTCAATTTCCATAAAACCTCTAATAGAAGGGCACTGATACATTGAGCCAATTTTTCTCGCTTTCCGTCAATGATATAAAAAAGTTGTCAACTGATAAGTTGTTCATCAAATCGATATCTTTCACAAAAACCGAGATATATGGGCTCAAAGCTAGGGGGCCTTATATTACAGGAAACTAACGTCAGTCATCTCACGAGAATGTTCGAGAAGAGCACATGCTTTGCGGTAGACGGCA</canonical>
            <polymorphic>CGAGTTCCAGTTGCATCTCGTACTCTTTTTGCGCCTTCTCACGCTCCTCCTCCATCTTGCGACGTCTTCAAAAATCAGTTTGATTGACCAATCAATGTTTTAAAGTTTGGTATTCATCACAAAATTTAAAAACCTCAGAATTTCCCAGCCAAGTTCATTTCAAAAACTCACAAAAGTCTCTCCTGCTCCGCAGCGGCCTTCTCCTCCAGCTCGCGACGTTCCTTCTCTTCGGCTTCTCGGCGTGCACGCTCCACCTCAGCGAGTTCGTCATTTTCCAATTGTTGTCTGCAATTTTGATGGATACTGTACTTTGAATAAAAGAGTTTCTTTTTTTAATTCAAGAAAATACTAATTAGCGTAAAACCTATAATAGAAGAGCTCCACACTGTCAAGTTTGAGCCCATATACCTCGGTTCTTGTAGCAGTTATCAAAAGGCGGTCAACTGATAAAACGTTTGTGATGTTATGATAAACAATTTATCAGTTAACAACTTTTCGAWATCTGTCACGGGAAGCGAGAAAAATTGACTCAAAGTTAAAAGTTGAAAAAAAAACAAACTTCAAATCGGCAATAATCGAATCAACTCTGGCGACACACTCCTCGTAACACTTGACAGCTCGATCAATCTCCTCCTCCAAATCGTCGTTTTTGATCCGCTTGACGAGCTCTTCGAGTTCGGAAGTCGTCGAATCGGCCGCTTGTCTCCATTTGTCCTGACTCGTCTCGTTCATACGAGCCAAAATCTAAAGCAAAATTGCTCATTTTTCAATTTCCATAAAACCTCTAATAGAAGGGCACTGATACATTGAGCCAATTTTTCTCGCTTTCCGTCAATGATATAAAAAAGTTGTCAACTGATAAGTTGTTCATCAAATCGATATCTTTCACAAAAACCGAGATATATGGGCTCAAAGCTAGGGGGCCTTATATTACAGGAAACTAACGTCAGTCATCTCACGAGAATGTTCGAGAAGAGCACATGCTTTGCGGTAGACGGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGATACTGTACTTTGAATAAAAGAG</pcr_primer_p1>
		<pcr_primer_p2>CCGATTTGAAGTTTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>TGGATACTGTACTTTGAATAAAAGAGTTTCTTTTTTTAATTCAAGAAAATACTAATTAGCGTAAAACCTATAATAGAAGAGCTCCACACTGTCAAGTTTGAGCCCATATACCTCGGTTCTTGTAGCAGTTATCAAAAGGCGGTCAACTGATAAAACGTTTGTGATGTTATGATAAACAATTTATCAGTTAACAACTTTTCGAAATCTGTCACGGGAAGCGAGAAAAATTGACTCAAAGTTAAAAGTTGAAAAAAAAACAAACTTCAAATCGG</canonical_amplicon>
		<polymorphic_amplicon>TGGATACTGTACTTTGAATAAAAGAGTTTCTTTTTTTAATTCAAGAAAATACTAATTAGCGTAAAACCTATAATAGAAGAGCTCCACACTGTCAAGTTTGAGCCCATATACCTCGGTTCTTGTAGCAGTTATCAAAAGGCGGTCAACTGATAAAACGTTTGTGATGTTATGATAAACAATTTATCAGTTAACAACTTTTCGAWATCTGTCACGGGAAGCGAGAAAAATTGACTCAAAGTTAAAAGTTGAAAAAAAAACAAACTTCAAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35472</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>92022</contig_pos>
        <strand>+</strand>
        <context>GGAAGTCGTC[A/G]AATCGGCCGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCGTCGTTTTTGATCCGCTTGACGAGCTCTTCGAGTTCGGAAGTCGTC</left_flank>
        <right_flank>AATCGGCCGCTTGTCTCCATTTGTCCTGACTCGTCTCGTTCATACGAGCC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAGCGGCCTTCTCCTCCAGCTCGCGACGTTCCTTCTCTTCGGCTTCTCGGCGTGCACGCTCCACCTCAGCGAGTTCGTCATTTTCCAATTGTTGTCTGCAATTTTGATGGATACTGTACTTTGAATAAAAGAGTTTCTTTTTTTAATTCAAGAAAATACTAATTAGCGTAAAACCTATAATAGAAGAGCTCCACACTGTCAAGTTTGAGCCCATATACCTCGGTTCTTGTAGCAGTTATCAAAAGGCGGTCAACTGATAAAACGTTTGTGATGTTATGATAAACAATTTATCAGTTAACAACTTTTCGAAATCTGTCACGGGAAGCGAGAAAAATTGACTCAAAGTTAAAAGTTGAAAAAAAAACAAACTTCAAATCGGCAATAATCGAATCAACTCTGGCGACACACTCCTCGTAACACTTGACAGCTCGATCAATCTCCTCCTCCAAATCGTCGTTTTTGATCCGCTTGACGAGCTCTTCGAGTTCGGAAGTCGTCGAATCGGCCGCTTGTCTCCATTTGTCCTGACTCGTCTCGTTCATACGAGCCAAAATCTAAAGCAAAATTGCTCATTTTTCAATTTCCATAAAACCTCTAATAGAAGGGCACTGATACATTGAGCCAATTTTTCTCGCTTTCCGTCAATGATATAAAAAAGTTGTCAACTGATAAGTTGTTCATCAAATCGATATCTTTCACAAAAACCGAGATATATGGGCTCAAAGCTAGGGGGCCTTATATTACAGGAAACTAACGTCAGTCATCTCACGAGAATGTTCGAGAAGAGCACATGCTTTGCGGTAGACGGCAAGTCTGGAAGGTGACATTTTTGGGGTGAATGAAGAAAGTCGAAAAGGAAAATTCTCGAAAAAAAATTTTTCAAGAGCCCTCGAATTCACATAAAATCTATGGGTTGCCAGGGGAAGTGTTGTCCAGGAGATATGGGAAAATTTGAAAAAAAAAACTGAAAAGATTGGAGAGACGCAGAGAAAAAGGCAA</canonical>
            <polymorphic>GCAGCGGCCTTCTCCTCCAGCTCGCGACGTTCCTTCTCTTCGGCTTCTCGGCGTGCACGCTCCACCTCAGCGAGTTCGTCATTTTCCAATTGTTGTCTGCAATTTTGATGGATACTGTACTTTGAATAAAAGAGTTTCTTTTTTTAATTCAAGAAAATACTAATTAGCGTAAAACCTATAATAGAAGAGCTCCACACTGTCAAGTTTGAGCCCATATACCTCGGTTCTTGTAGCAGTTATCAAAAGGCGGTCAACTGATAAAACGTTTGTGATGTTATGATAAACAATTTATCAGTTAACAACTTTTCGAAATCTGTCACGGGAAGCGAGAAAAATTGACTCAAAGTTAAAAGTTGAAAAAAAAACAAACTTCAAATCGGCAATAATCGAATCAACTCTGGCGACACACTCCTCGTAACACTTGACAGCTCGATCAATCTCCTCCTCCAAATCGTCGTTTTTGATCCGCTTGACGAGCTCTTCGAGTTCGGAAGTCGTCRAATCGGCCGCTTGTCTCCATTTGTCCTGACTCGTCTCGTTCATACGAGCCAAAATCTAAAGCAAAATTGCTCATTTTTCAATTTCCATAAAACCTCTAATAGAAGGGCACTGATACATTGAGCCAATTTTTCTCGCTTTCCGTCAATGATATAAAAAAGTTGTCAACTGATAAGTTGTTCATCAAATCGATATCTTTCACAAAAACCGAGATATATGGGCTCAAAGCTAGGGGGCCTTATATTACAGGAAACTAACGTCAGTCATCTCACGAGAATGTTCGAGAAGAGCACATGCTTTGCGGTAGACGGCAAGTCTGGAAGGTGACATTTTTGGGGTGAATGAAGAAAGTCGAAAAGGAAAATTCTCGAAAAAAAATTTTTCAAGAGCCCTCGAATTCACATAAAATCTATGGGTTGCCAGGGGAAGTGTTGTCCAGGAGATATGGGAAAATTTGAAAAAAAAAACTGAAAAGATTGGAGAGACGCAGAGAAAAAGGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>308 189 108 92 80 71 52 43 25 16 16</canonical_bands>
                <polymorphic_bands>308 205 108 92 80 71 52 43 25 16</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>472 338 111 51 28</canonical_bands>
                <polymorphic_bands>472 338 139 51</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>500 428 43 29</canonical_bands>
                <polymorphic_bands>543 428 29</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 389 111</canonical_bands>
                <polymorphic_bands>611 389</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTTCAAATCGGCAATAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAATGAGCAATTTTGCTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>211</pcr_amplicon_size>
		<canonical_amplicon>AAACTTCAAATCGGCAATAATCGAATCAACTCTGGCGACACACTCCTCGTAACACTTGACAGCTCGATCAATCTCCTCCTCCAAATCGTCGTTTTTGATCCGCTTGACGAGCTCTTCGAGTTCGGAAGTCGTCGAATCGGCCGCTTGTCTCCATTTGTCCTGACTCGTCTCGTTCATACGAGCCAAAATCTAAAGCAAAATTGCTCATTTT</canonical_amplicon>
		<polymorphic_amplicon>AAACTTCAAATCGGCAATAATCGAATCAACTCTGGCGACACACTCCTCGTAACACTTGACAGCTCGATCAATCTCCTCCTCCAAATCGTCGTTTTTGATCCGCTTGACGAGCTCTTCGAGTTCGGAAGTCGTCRAATCGGCCGCTTGTCTCCATTTGTCCTGACTCGTCTCGTTCATACGAGCCAAAATCTAAAGCAAAATTGCTCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35473</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>92102</contig_pos>
        <strand>+</strand>
        <context>CTCATTTTTC[A/G]ATTTccataa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCGTCTCGTTCATACGAGCCAAAATCTAAAGCAAAATTGCTCATTTTTC</left_flank>
        <right_flank>ATTTCCATAAAACCTCTAATAGAAGGGCACTGATACATTGAGCCAATTTT</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTCCAATTGTTGTCTGCAATTTTGATGGATACTGTACTTTGAATAAAAGAGTTTCTTTTTTTAATTCAAGAAAATACTAATTAGCGTAAAACCTATAATAGAAGAGCTCCACACTGTCAAGTTTGAGCCCATATACCTCGGTTCTTGTAGCAGTTATCAAAAGGCGGTCAACTGATAAAACGTTTGTGATGTTATGATAAACAATTTATCAGTTAACAACTTTTCGAAATCTGTCACGGGAAGCGAGAAAAATTGACTCAAAGTTAAAAGTTGAAAAAAAAACAAACTTCAAATCGGCAATAATCGAATCAACTCTGGCGACACACTCCTCGTAACACTTGACAGCTCGATCAATCTCCTCCTCCAAATCGTCGTTTTTGATCCGCTTGACGAGCTCTTCGAGTTCGGAAGTCGTCGAATCGGCCGCTTGTCTCCATTTGTCCTGACTCGTCTCGTTCATACGAGCCAAAATCTAAAGCAAAATTGCTCATTTTTCAATTTCCATAAAACCTCTAATAGAAGGGCACTGATACATTGAGCCAATTTTTCTCGCTTTCCGTCAATGATATAAAAAAGTTGTCAACTGATAAGTTGTTCATCAAATCGATATCTTTCACAAAAACCGAGATATATGGGCTCAAAGCTAGGGGGCCTTATATTACAGGAAACTAACGTCAGTCATCTCACGAGAATGTTCGAGAAGAGCACATGCTTTGCGGTAGACGGCAAGTCTGGAAGGTGACATTTTTGGGGTGAATGAAGAAAGTCGAAAAGGAAAATTCTCGAAAAAAAATTTTTCAAGAGCCCTCGAATTCACATAAAATCTATGGGTTGCCAGGGGAAGTGTTGTCCAGGAGATATGGGAAAATTTGAAAAAAAAAACTGAAAAGATTGGAGAGACGCAGAGAAAAAGGCAAAACCAAAGTGTCCCAAAATTTGGTCCAGTTTTATATTTGTCCGTTTTCAAAATTTATGAAAATTCAAACTTTCAAAAAAC</canonical>
            <polymorphic>ATTTTCCAATTGTTGTCTGCAATTTTGATGGATACTGTACTTTGAATAAAAGAGTTTCTTTTTTTAATTCAAGAAAATACTAATTAGCGTAAAACCTATAATAGAAGAGCTCCACACTGTCAAGTTTGAGCCCATATACCTCGGTTCTTGTAGCAGTTATCAAAAGGCGGTCAACTGATAAAACGTTTGTGATGTTATGATAAACAATTTATCAGTTAACAACTTTTCGAAATCTGTCACGGGAAGCGAGAAAAATTGACTCAAAGTTAAAAGTTGAAAAAAAAACAAACTTCAAATCGGCAATAATCGAATCAACTCTGGCGACACACTCCTCGTAACACTTGACAGCTCGATCAATCTCCTCCTCCAAATCGTCGTTTTTGATCCGCTTGACGAGCTCTTCGAGTTCGGAAGTCGTCGAATCGGCCGCTTGTCTCCATTTGTCCTGACTCGTCTCGTTCATACGAGCCAAAATCTAAAGCAAAATTGCTCATTTTTCRATTTCCATAAAACCTCTAATAGAAGGGCACTGATACATTGAGCCAATTTTTCTCGCTTTCCGTCAATGATATAAAAAAGTTGTCAACTGATAAGTTGTTCATCAAATCGATATCTTTCACAAAAACCGAGATATATGGGCTCAAAGCTAGGGGGCCTTATATTACAGGAAACTAACGTCAGTCATCTCACGAGAATGTTCGAGAAGAGCACATGCTTTGCGGTAGACGGCAAGTCTGGAAGGTGACATTTTTGGGGTGAATGAAGAAAGTCGAAAAGGAAAATTCTCGAAAAAAAATTTTTCAAGAGCCCTCGAATTCACATAAAATCTATGGGTTGCCAGGGGAAGTGTTGTCCAGGAGATATGGGAAAATTTGAAAAAAAAAACTGAAAAGATTGGAGAGACGCAGAGAAAAAGGCAAAACCAAAGTGTCCCAAAATTTGGTCCAGTTTTATATTTGTCCGTTTTCAAAATTTATGAAAATTCAAACTTTCAAAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>236 231 124 67 56 48 45 45 34 20 19 16 15 14 13 10 7</canonical_bands>
                <polymorphic_bands>236 231 124 67 60 56 48 45 34 20 19 16 14 13 10 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTGACTCGTCTCGTTCATA</pcr_primer_p1>
		<pcr_primer_p2>CATTCTCGTGAGATGACTGAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CCTGACTCGTCTCGTTCATACGAGCCAAAATCTAAAGCAAAATTGCTCATTTTTCAATTTCCATAAAACCTCTAATAGAAGGGCACTGATACATTGAGCCAATTTTTCTCGCTTTCCGTCAATGATATAAAAAAGTTGTCAACTGATAAGTTGTTCATCAAATCGATATCTTTCACAAAAACCGAGATATATGGGCTCAAAGCTAGGGGGCCTTATATTACAGGAAACTAACGTCAGTCATCTCACGAGAATG</canonical_amplicon>
		<polymorphic_amplicon>CCTGACTCGTCTCGTTCATACGAGCCAAAATCTAAAGCAAAATTGCTCATTTTTCRATTTCCATAAAACCTCTAATAGAAGGGCACTGATACATTGAGCCAATTTTTCTCGCTTTCCGTCAATGATATAAAAAAGTTGTCAACTGATAAGTTGTTCATCAAATCGATATCTTTCACAAAAACCGAGATATATGGGCTCAAAGCTAGGGGGCCTTATATTACAGGAAACTAACGTCAGTCATCTCACGAGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35474</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>92211</contig_pos>
        <strand></strand>
        <context>tcatcaaatc[G/A]atatctttca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCCGTCAATGATATAAAAAAGTTGTCAACTGATAAGTTGTTCATCAAATC</left_flank>
        <right_flank>ATATCTTTCACAAAAACCGAGATATATGGGCTCAAAGCTAGGGGGCCTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCACACTGTCAAGTTTGAGCCCATATACCTCGGTTCTTGTAGCAGTTATCAAAAGGCGGTCAACTGATAAAACGTTTGTGATGTTATGATAAACAATTTATCAGTTAACAACTTTTCGAAATCTGTCACGGGAAGCGAGAAAAATTGACTCAAAGTTAAAAGTTGAAAAAAAAACAAACTTCAAATCGGCAATAATCGAATCAACTCTGGCGACACACTCCTCGTAACACTTGACAGCTCGATCAATCTCCTCCTCCAAATCGTCGTTTTTGATCCGCTTGACGAGCTCTTCGAGTTCGGAAGTCGTCGAATCGGCCGCTTGTCTCCATTTGTCCTGACTCGTCTCGTTCATACGAGCCAAAATCTAAAGCAAAATTGCTCATTTTTCAATTTCCATAAAACCTCTAATAGAAGGGCACTGATACATTGAGCCAATTTTTCTCGCTTTCCGTCAATGATATAAAAAAGTTGTCAACTGATAAGTTGTTCATCAAATCGATATCTTTCACAAAAACCGAGATATATGGGCTCAAAGCTAGGGGGCCTTATATTACAGGAAACTAACGTCAGTCATCTCACGAGAATGTTCGAGAAGAGCACATGCTTTGCGGTAGACGGCAAGTCTGGAAGGTGACATTTTTGGGGTGAATGAAGAAAGTCGAAAAGGAAAATTCTCGAAAAAAAATTTTTCAAGAGCCCTCGAATTCACATAAAATCTATGGGTTGCCAGGGGAAGTGTTGTCCAGGAGATATGGGAAAATTTGAAAAAAAAAACTGAAAAGATTGGAGAGACGCAGAGAAAAAGGCAAAACCAAAGTGTCCCAAAATTTGGTCCAGTTTTATATTTGTCCGTTTTCAAAATTTATGAAAATTCAAACTTTCAAAAAACTTCAGTTTCAGAAAAAAGAAGGCTGAAGTTTAAAAAAAGCGGAAATTTTGAAAATAGTCCTAATTTCCTAGAACATGATCTATAAATTCAAAATCGCTTTTGGCAGGAA</canonical>
            <polymorphic>CTCCACACTGTCAAGTTTGAGCCCATATACCTCGGTTCTTGTAGCAGTTATCAAAAGGCGGTCAACTGATAAAACGTTTGTGATGTTATGATAAACAATTTATCAGTTAACAACTTTTCGAAATCTGTCACGGGAAGCGAGAAAAATTGACTCAAAGTTAAAAGTTGAAAAAAAAACAAACTTCAAATCGGCAATAATCGAATCAACTCTGGCGACACACTCCTCGTAACACTTGACAGCTCGATCAATCTCCTCCTCCAAATCGTCGTTTTTGATCCGCTTGACGAGCTCTTCGAGTTCGGAAGTCGTCGAATCGGCCGCTTGTCTCCATTTGTCCTGACTCGTCTCGTTCATACGAGCCAAAATCTAAAGCAAAATTGCTCATTTTTCAATTTCCATAAAACCTCTAATAGAAGGGCACTGATACATTGAGCCAATTTTTCTCGCTTTCCGTCAATGATATAAAAAAGTTGTCAACTGATAAGTTGTTCATCAAATCRATATCTTTCACAAAAACCGAGATATATGGGCTCAAAGCTAGGGGGCCTTATATTACAGGAAACTAACGTCAGTCATCTCACGAGAATGTTCGAGAAGAGCACATGCTTTGCGGTAGACGGCAAGTCTGGAAGGTGACATTTTTGGGGTGAATGAAGAAAGTCGAAAAGGAAAATTCTCGAAAAAAAATTTTTCAAGAGCCCTCGAATTCACATAAAATCTATGGGTTGCCAGGGGAAGTGTTGTCCAGGAGATATGGGAAAATTTGAAAAAAAAAACTGAAAAGATTGGAGAGACGCAGAGAAAAAGGCAAAACCAAAGTGTCCCAAAATTTGGTCCAGTTTTATATTTGTCCGTTTTCAAAATTTATGAAAATTCAAACTTTCAAAAAACTTCAGTTTCAGAAAAAAGAAGGCTGAAGTTTAAAAAAAGCGGAAATTTTGAAAATAGTCCTAATTTCCTAGAACATGATCTATAAATTCAAAATCGCTTTTGGCAGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>297 189 119 92 80 71 52 43 25 16 16</canonical_bands>
                <polymorphic_bands>297 281 119 80 71 52 43 25 16 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCATACGAGCCAAAATCTAA</pcr_primer_p1>
		<pcr_primer_p2>AACATTCTCGTGAGATGACTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTTCATACGAGCCAAAATCTAAAGCAAAATTGCTCATTTTTCAATTTCCATAAAACCTCTAATAGAAGGGCACTGATACATTGAGCCAATTTTTCTCGCTTTCCGTCAATGATATAAAAAAGTTGTCAACTGATAAGTTGTTCATCAAATCGATATCTTTCACAAAAACCGAGATATATGGGCTCAAAGCTAGGGGGCCTTATATTACAGGAAACTAACGTCAGTCATCTCACGAGAATGTT</canonical_amplicon>
		<polymorphic_amplicon>GTTCATACGAGCCAAAATCTAAAGCAAAATTGCTCATTTTTCAATTTCCATAAAACCTCTAATAGAAGGGCACTGATACATTGAGCCAATTTTTCTCGCTTTCCGTCAATGATATAAAAAAGTTGTCAACTGATAAGTTGTTCATCAAATCRATATCTTTCACAAAAACCGAGATATATGGGCTCAAAGCTAGGGGGCCTTATATTACAGGAAACTAACGTCAGTCATCTCACGAGAATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35475</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>92453</contig_pos>
        <strand>+</strand>
        <context>GGGGAAGTGT[C/T]GTCCAGGAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAAGAGCCCTCGAATTCACATAAAATCTATGGGTTGCCAGGGGAAGTGT</left_flank>
        <right_flank>GTCCAGGAGATATGGGAAAATTTGAAAAAAAAAACTGAAAAGATTGGAGA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCAATCTCCTCCTCCAAATCGTCGTTTTTGATCCGCTTGACGAGCTCTTCGAGTTCGGAAGTCGTCGAATCGGCCGCTTGTCTCCATTTGTCCTGACTCGTCTCGTTCATACGAGCCAAAATCTAAAGCAAAATTGCTCATTTTTCAATTTCCATAAAACCTCTAATAGAAGGGCACTGATACATTGAGCCAATTTTTCTCGCTTTCCGTCAATGATATAAAAAAGTTGTCAACTGATAAGTTGTTCATCAAATCGATATCTTTCACAAAAACCGAGATATATGGGCTCAAAGCTAGGGGGCCTTATATTACAGGAAACTAACGTCAGTCATCTCACGAGAATGTTCGAGAAGAGCACATGCTTTGCGGTAGACGGCAAGTCTGGAAGGTGACATTTTTGGGGTGAATGAAGAAAGTCGAAAAGGAAAATTCTCGAAAAAAAATTTTTCAAGAGCCCTCGAATTCACATAAAATCTATGGGTTGCCAGGGGAAGTGTTGTCCAGGAGATATGGGAAAATTTGAAAAAAAAAACTGAAAAGATTGGAGAGACGCAGAGAAAAAGGCAAAACCAAAGTGTCCCAAAATTTGGTCCAGTTTTATATTTGTCCGTTTTCAAAATTTATGAAAATTCAAACTTTCAAAAAACTTCAGTTTCAGAAAAAAGAAGGCTGAAGTTTAAAAAAAGCGGAAATTTTGAAAATAGTCCTAATTTCCTAGAACATGATCTATAAATTCAAAATCGCTTTTGGCAGGAAATTCTGGCTTCACGTCACTTTGCAACCACGACGTTTTGAAACCGGTCATTTCGAAACTGCATGACACTTCAAAATCGGTCATTTCGAAACCGCTGCACTTCGAAACCAGTCGTTTCGAAACTGCGAAACTTGCACGTTGAAATTTTTTCTTCAATTTAAGACTTAAAATTTCCAATTTTCAATGTCATTTTTAAGTGACCGTGTTTTTTCTCGGTTTCGAAATGACCGGTTTCGAAGTGTCG</canonical>
            <polymorphic>GATCAATCTCCTCCTCCAAATCGTCGTTTTTGATCCGCTTGACGAGCTCTTCGAGTTCGGAAGTCGTCGAATCGGCCGCTTGTCTCCATTTGTCCTGACTCGTCTCGTTCATACGAGCCAAAATCTAAAGCAAAATTGCTCATTTTTCAATTTCCATAAAACCTCTAATAGAAGGGCACTGATACATTGAGCCAATTTTTCTCGCTTTCCGTCAATGATATAAAAAAGTTGTCAACTGATAAGTTGTTCATCAAATCGATATCTTTCACAAAAACCGAGATATATGGGCTCAAAGCTAGGGGGCCTTATATTACAGGAAACTAACGTCAGTCATCTCACGAGAATGTTCGAGAAGAGCACATGCTTTGCGGTAGACGGCAAGTCTGGAAGGTGACATTTTTGGGGTGAATGAAGAAAGTCGAAAAGGAAAATTCTCGAAAAAAAATTTTTCAAGAGCCCTCGAATTCACATAAAATCTATGGGTTGCCAGGGGAAGTGTYGTCCAGGAGATATGGGAAAATTTGAAAAAAAAAACTGAAAAGATTGGAGAGACGCAGAGAAAAAGGCAAAACCAAAGTGTCCCAAAATTTGGTCCAGTTTTATATTTGTCCGTTTTCAAAATTTATGAAAATTCAAACTTTCAAAAAACTTCAGTTTCAGAAAAAAGAAGGCTGAAGTTTAAAAAAAGCGGAAATTTTGAAAATAGTCCTAATTTCCTAGAACATGATCTATAAATTCAAAATCGCTTTTGGCAGGAAATTCTGGCTTCACGTCACTTTGCAACCACGACGTTTTGAAACCGGTCATTTCGAAACTGCATGACACTTCAAAATCGGTCATTTCGAAACCGCTGCACTTCGAAACCAGTCGTTTCGAAACTGCGAAACTTGCACGTTGAAATTTTTTCTTCAATTTAAGACTTAAAATTTCCAATTTTCAATGTCATTTTTAAGTGACCGTGTTTTTTCTCGGTTTCGAAATGACCGGTTTCGAAGTGTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCTGGAAGGTGACATTTT</pcr_primer_p1>
		<pcr_primer_p2>TAAATTTTGAAAACGGACAAATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAGTCTGGAAGGTGACATTTTTGGGGTGAATGAAGAAAGTCGAAAAGGAAAATTCTCGAAAAAAAATTTTTCAAGAGCCCTCGAATTCACATAAAATCTATGGGTTGCCAGGGGAAGTGTTGTCCAGGAGATATGGGAAAATTTGAAAAAAAAAACTGAAAAGATTGGAGAGACGCAGAGAAAAAGGCAAAACCAAAGTGTCCCAAAATTTGGTCCAGTTTTATATTTGTCCGTTTTCAAAATTTA</canonical_amplicon>
		<polymorphic_amplicon>AAGTCTGGAAGGTGACATTTTTGGGGTGAATGAAGAAAGTCGAAAAGGAAAATTCTCGAAAAAAAATTTTTCAAGAGCCCTCGAATTCACATAAAATCTATGGGTTGCCAGGGGAAGTGTYGTCCAGGAGATATGGGAAAATTTGAAAAAAAAAACTGAAAAGATTGGAGAGACGCAGAGAAAAAGGCAAAACCAAAGTGTCCCAAAATTTGGTCCAGTTTTATATTTGTCCGTTTTCAAAATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35476</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>142851</contig_pos>
        <strand></strand>
        <context>TTACTGTAGA[A/G]WTTYGRAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGA</left_flank>
        <right_flank>TTTCGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGG</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGCAAAAAAAAGTTATAGGTGTGTGTGTGTGTGTGTGTGACAGATTATAATTTTTAGACAGTTTTCATGGAGAAGCTGGCGACCGGAAATACAGCTACAGTAGCATTTTTGGGTTACTGTAATTTCGAATTTTTGGAAGTTTGAAAAGTTTCCAAAATGATGAGAGAAGTTAGGAAAAACTACAGTAGCATTGTTAGGTTACTGTAGGGATTTGGAAATTAAAAAATTATTTTTAAAACTTAAAATTTAGAAGATTTTAGTGTCGGGTTACTGTAGGAATTTGGGACCTTGGAAATCCCGAAAAACTAGAGAAAAAAATCAGAAATTTTAAATTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACTTTACGAAAAAAAGGATTATGAGAGAGAGAGAGAGAGAGAGATTAAAGATTACTGTAGGTTACGGTAGCTACTGTAGTGAATCTTTAGTGTTATTGGAAGAGTACTATAGGTGAGCAAAAATTTTTCTGTTTGGAAAATTTTTTAATTTTCAAAATAGAAATTTCCAATACCTATTTCCCAGATTACTGTAGCTCTACGAAATAATGATTATTATGAAATTTTCTCAAAATCCAGTTTGAAAGATTACTGTAGCCAAAGTACTGTATTTGCAAAGCAAGCGTAGTAATCCTTATAAATGTCATAAGGATTACTGTAACAGACTGTTCATGAGGTTATGGTAGGTTGGGATACTGTAATTGAGATCAAAGGGTTACTGTAGGTATGACATTTTCAAAGATTACGGTAGATGTGAATAT</canonical>
            <polymorphic>TTTCGCAAAAAAAAGTTATAGGTGTGTGTGTGTGTGTGTGTGACAGATTATAATTTTTAGACAGTTTTCATGGAGAAGCTGGCGACCGGAAATACAGCTACAGTAGCATTTTTGGGTTACTGTAATTTCGAATTTTTGGAAGTTTGAAAAGTTTCCAAAATGATGAGAGAAGTTAGGAAAAACTACAGTAGCATTGTTAGGTTACTGTAGGGATTTGGAAATTAAAAAATTATTTTTAAAACTTAAAATTTAGAAGATTTTAGTGTCGGGTTACTGTAGGAATTTGGGACCTTGGAAATCCCGAAAAACTAGAGAAAAAAATCAGAAATTTTAAATTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGARTTTCGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACTTTACGAAAAAAAGGATTATGAGAGAGAGAGAGAGAGAGAGATTAAAGATTACTGTAGGTTACGGTAGCTACTGTAGTGAATCTTTAGTGTTATTGGAAGAGTACTATAGGTGAGCAAAAATTTTTCTGTTTGGAAAATTTTTTAATTTTCAAAATAGAAATTTCCAATACCTATTTCCCAGATTACTGTAGCTCTACGAAATAATGATTATTATGAAATTTTCTCAAAATCCAGTTTGAAAGATTACTGTAGCCAAAGTACTGTATTTGCAAAGCAAGCGTAGTAATCCTTATAAATGTCATAAGGATTACTGTAACAGACTGTTCATGAGGTTATGGTAGGTTGGGATACTGTAATTGAGATCAAAGGGTTACTGTAGGTATGACATTTTCAAAGATTACGGTAGATGTGAATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>200 142 130 116 86 79 58 52 46 34 23 17 10 7</canonical_bands>
                <polymorphic_bands>200 142 138 130 116 79 58 46 34 23 17 10 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>138 135 89 72 62 58 52 51 46 42 40 39 37 34 19 17 15 10 8 8 7 7 7 7</canonical_bands>
                <polymorphic_bands>138 135 94 89 72 62 58 51 46 40 39 37 34 19 17 15 10 8 8 7 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTCTCCAGATTACTGTAGC</pcr_primer_p1>
		<pcr_primer_p2>AGTCATCCAGAAAAATTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGARTTTCGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35477</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>142852</contig_pos>
        <strand></strand>
        <context>TACTGTAGAR[T/A]TTYGRAACTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAA</left_flank>
        <right_flank>TTCGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGCAAAAAAAAGTTATAGGTGTGTGTGTGTGTGTGTGTGACAGATTATAATTTTTAGACAGTTTTCATGGAGAAGCTGGCGACCGGAAATACAGCTACAGTAGCATTTTTGGGTTACTGTAATTTCGAATTTTTGGAAGTTTGAAAAGTTTCCAAAATGATGAGAGAAGTTAGGAAAAACTACAGTAGCATTGTTAGGTTACTGTAGGGATTTGGAAATTAAAAAATTATTTTTAAAACTTAAAATTTAGAAGATTTTAGTGTCGGGTTACTGTAGGAATTTGGGACCTTGGAAATCCCGAAAAACTAGAGAAAAAAATCAGAAATTTTAAATTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACTTTACGAAAAAAAGGATTATGAGAGAGAGAGAGAGAGAGAGATTAAAGATTACTGTAGGTTACGGTAGCTACTGTAGTGAATCTTTAGTGTTATTGGAAGAGTACTATAGGTGAGCAAAAATTTTTCTGTTTGGAAAATTTTTTAATTTTCAAAATAGAAATTTCCAATACCTATTTCCCAGATTACTGTAGCTCTACGAAATAATGATTATTATGAAATTTTCTCAAAATCCAGTTTGAAAGATTACTGTAGCCAAAGTACTGTATTTGCAAAGCAAGCGTAGTAATCCTTATAAATGTCATAAGGATTACTGTAACAGACTGTTCATGAGGTTATGGTAGGTTGGGATACTGTAATTGAGATCAAAGGGTTACTGTAGGTATGACATTTTCAAAGATTACGGTAGATGTGAATATA</canonical>
            <polymorphic>TTCGCAAAAAAAAGTTATAGGTGTGTGTGTGTGTGTGTGTGACAGATTATAATTTTTAGACAGTTTTCATGGAGAAGCTGGCGACCGGAAATACAGCTACAGTAGCATTTTTGGGTTACTGTAATTTCGAATTTTTGGAAGTTTGAAAAGTTTCCAAAATGATGAGAGAAGTTAGGAAAAACTACAGTAGCATTGTTAGGTTACTGTAGGGATTTGGAAATTAAAAAATTATTTTTAAAACTTAAAATTTAGAAGATTTTAGTGTCGGGTTACTGTAGGAATTTGGGACCTTGGAAATCCCGAAAAACTAGAGAAAAAAATCAGAAATTTTAAATTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAAWTTCGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACTTTACGAAAAAAAGGATTATGAGAGAGAGAGAGAGAGAGAGATTAAAGATTACTGTAGGTTACGGTAGCTACTGTAGTGAATCTTTAGTGTTATTGGAAGAGTACTATAGGTGAGCAAAAATTTTTCTGTTTGGAAAATTTTTTAATTTTCAAAATAGAAATTTCCAATACCTATTTCCCAGATTACTGTAGCTCTACGAAATAATGATTATTATGAAATTTTCTCAAAATCCAGTTTGAAAGATTACTGTAGCCAAAGTACTGTATTTGCAAAGCAAGCGTAGTAATCCTTATAAATGTCATAAGGATTACTGTAACAGACTGTTCATGAGGTTATGGTAGGTTGGGATACTGTAATTGAGATCAAAGGGTTACTGTAGGTATGACATTTTCAAAGATTACGGTAGATGTGAATATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>201 142 129 116 86 79 58 52 46 34 23 17 10 7</canonical_bands>
                <polymorphic_bands>201 142 138 129 116 79 58 46 34 23 17 10 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>138 135 89 72 63 58 52 50 46 42 40 39 37 34 19 17 15 10 8 8 7 7 7 7</canonical_bands>
                <polymorphic_bands>138 135 94 89 72 63 58 50 46 40 39 37 34 19 17 15 10 8 8 7 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTCTCCAGATTACTGTAGC</pcr_primer_p1>
		<pcr_primer_p2>AGTCATCCAGAAAAATTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAAWTTCGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35478</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>142857</contig_pos>
        <strand></strand>
        <context>TAGARWTTYG[G/A]AACTTTSAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCG</left_flank>
        <right_flank>AACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAAAGTTATAGGTGTGTGTGTGTGTGTGTGTGACAGATTATAATTTTTAGACAGTTTTCATGGAGAAGCTGGCGACCGGAAATACAGCTACAGTAGCATTTTTGGGTTACTGTAATTTCGAATTTTTGGAAGTTTGAAAAGTTTCCAAAATGATGAGAGAAGTTAGGAAAAACTACAGTAGCATTGTTAGGTTACTGTAGGGATTTGGAAATTAAAAAATTATTTTTAAAACTTAAAATTTAGAAGATTTTAGTGTCGGGTTACTGTAGGAATTTGGGACCTTGGAAATCCCGAAAAACTAGAGAAAAAAATCAGAAATTTTAAATTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACTTTACGAAAAAAAGGATTATGAGAGAGAGAGAGAGAGAGAGATTAAAGATTACTGTAGGTTACGGTAGCTACTGTAGTGAATCTTTAGTGTTATTGGAAGAGTACTATAGGTGAGCAAAAATTTTTCTGTTTGGAAAATTTTTTAATTTTCAAAATAGAAATTTCCAATACCTATTTCCCAGATTACTGTAGCTCTACGAAATAATGATTATTATGAAATTTTCTCAAAATCCAGTTTGAAAGATTACTGTAGCCAAAGTACTGTATTTGCAAAGCAAGCGTAGTAATCCTTATAAATGTCATAAGGATTACTGTAACAGACTGTTCATGAGGTTATGGTAGGTTGGGATACTGTAATTGAGATCAAAGGGTTACTGTAGGTATGACATTTTCAAAGATTACGGTAGATGTGAATATAAAGCG</canonical>
            <polymorphic>AAAAAAAAGTTATAGGTGTGTGTGTGTGTGTGTGTGACAGATTATAATTTTTAGACAGTTTTCATGGAGAAGCTGGCGACCGGAAATACAGCTACAGTAGCATTTTTGGGTTACTGTAATTTCGAATTTTTGGAAGTTTGAAAAGTTTCCAAAATGATGAGAGAAGTTAGGAAAAACTACAGTAGCATTGTTAGGTTACTGTAGGGATTTGGAAATTAAAAAATTATTTTTAAAACTTAAAATTTAGAAGATTTTAGTGTCGGGTTACTGTAGGAATTTGGGACCTTGGAAATCCCGAAAAACTAGAGAAAAAAATCAGAAATTTTAAATTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCGRAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACTTTACGAAAAAAAGGATTATGAGAGAGAGAGAGAGAGAGAGATTAAAGATTACTGTAGGTTACGGTAGCTACTGTAGTGAATCTTTAGTGTTATTGGAAGAGTACTATAGGTGAGCAAAAATTTTTCTGTTTGGAAAATTTTTTAATTTTCAAAATAGAAATTTCCAATACCTATTTCCCAGATTACTGTAGCTCTACGAAATAATGATTATTATGAAATTTTCTCAAAATCCAGTTTGAAAGATTACTGTAGCCAAAGTACTGTATTTGCAAAGCAAGCGTAGTAATCCTTATAAATGTCATAAGGATTACTGTAACAGACTGTTCATGAGGTTATGGTAGGTTGGGATACTGTAATTGAGATCAAAGGGTTACTGTAGGTATGACATTTTCAAAGATTACGGTAGATGTGAATATAAAGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>501 318 181</canonical_bands>
                <polymorphic_bands>682 318</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTCTCCAGATTACTGTAGC</pcr_primer_p1>
		<pcr_primer_p2>AGTCATCCAGAAAAATTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCGRAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35479</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>143011</contig_pos>
        <strand>+</strand>
        <context>AGCTACTGTA[A/T]TGAATCTTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGAGAGAGAGAGAGATTAAAGATTACTGTAGGTTACGGTAGCTACTGTA</left_flank>
        <right_flank>TGAATCTTTAGTGTTATTGGAAGAGTACTATAGGTGAGCAAAAATTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATGAGAGAAGTTAGGAAAAACTACAGTAGCATTGTTAGGTTACTGTAGGGATTTGGAAATTAAAAAATTATTTTTAAAACTTAAAATTTAGAAGATTTTAGTGTCGGGTTACTGTAGGAATTTGGGACCTTGGAAATCCCGAAAAACTAGAGAAAAAAATCAGAAATTTTAAATTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACTTTACGAAAAAAAGGATTATGAGAGAGAGAGAGAGAGAGAGATTAAAGATTACTGTAGGTTACGGTAGCTACTGTAGTGAATCTTTAGTGTTATTGGAAGAGTACTATAGGTGAGCAAAAATTTTTCTGTTTGGAAAATTTTTTAATTTTCAAAATAGAAATTTCCAATACCTATTTCCCAGATTACTGTAGCTCTACGAAATAATGATTATTATGAAATTTTCTCAAAATCCAGTTTGAAAGATTACTGTAGCCAAAGTACTGTATTTGCAAAGCAAGCGTAGTAATCCTTATAAATGTCATAAGGATTACTGTAACAGACTGTTCATGAGGTTATGGTAGGTTGGGATACTGTAATTGAGATCAAAGGGTTACTGTAGGTATGACATTTTCAAAGATTACGGTAGATGTGAATATAAAGCGTCAAAAAAAATTATTTTTGGAAGGAATAAACAGGATTACAAATAATTTCAAAATCAAAAATTAATTTGTTAACTTGGACGTTTTTTTAGGCTCCGCCCACTTTTTTCTCAAGAAAATGACACAAAGAATGATGAGAGATTTCATCAACTTTCAG</canonical>
            <polymorphic>TGATGAGAGAAGTTAGGAAAAACTACAGTAGCATTGTTAGGTTACTGTAGGGATTTGGAAATTAAAAAATTATTTTTAAAACTTAAAATTTAGAAGATTTTAGTGTCGGGTTACTGTAGGAATTTGGGACCTTGGAAATCCCGAAAAACTAGAGAAAAAAATCAGAAATTTTAAATTTTCTCTCCAGATTACTGTAGCTAACGTTACGATAGAATTATGGAAACTTCTTCGAAATCCAAAAAAAAAACTTAAAATTCATAATTTATAGGATTACTTTAATAGCCAGAATCATTCTTAATTTGATTGGGAAAGGCAACATTAATATCGGGTTACTGTAGAATTTCGGAACTTTCAGTGGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACTTTACGAAAAAAAGGATTATGAGAGAGAGAGAGAGAGAGAGATTAAAGATTACTGTAGGTTACGGTAGCTACTGTAWTGAATCTTTAGTGTTATTGGAAGAGTACTATAGGTGAGCAAAAATTTTTCTGTTTGGAAAATTTTTTAATTTTCAAAATAGAAATTTCCAATACCTATTTCCCAGATTACTGTAGCTCTACGAAATAATGATTATTATGAAATTTTCTCAAAATCCAGTTTGAAAGATTACTGTAGCCAAAGTACTGTATTTGCAAAGCAAGCGTAGTAATCCTTATAAATGTCATAAGGATTACTGTAACAGACTGTTCATGAGGTTATGGTAGGTTGGGATACTGTAATTGAGATCAAAGGGTTACTGTAGGTATGACATTTTCAAAGATTACGGTAGATGTGAATATAAAGCGTCAAAAAAAATTATTTTTGGAAGGAATAAACAGGATTACAAATAATTTCAAAATCAAAAATTAATTTGTTAACTTGGACGTTTTTTTAGGCTCCGCCCACTTTTTTCTCAAGAAAATGACACAAAGAATGATGAGAGATTTCATCAACTTTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>202 141 127 107 82 78 69 61 36 33 23 22 19</canonical_bands>
                <polymorphic_bands>202 141 127 107 82 78 69 61 52 36 23 22</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>299 252 145 110 105 33 23 22 11</canonical_bands>
                <polymorphic_bands>299 252 156 110 105 33 23 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAACGGATTACTGTAGAGATT</pcr_primer_p1>
		<pcr_primer_p2>CTGGGAAATAGGTATTGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACTTTACGAAAAAAAGGATTATGAGAGAGAGAGAGAGAGAGAGATTAAAGATTACTGTAGGTTACGGTAGCTACTGTAGTGAATCTTTAGTGTTATTGGAAGAGTACTATAGGTGAGCAAAAATTTTTCTGTTTGGAAAATTTTTTAATTTTCAAAATAGAAATTTCCAATACCTATTTCCCAG</canonical_amplicon>
		<polymorphic_amplicon>GGAAACGGATTACTGTAGAGATTCGAAACTTTGGAATTTTTTGAAATTTTCAATTTTTCTGGATGACTTTACGAAAAAAAGGATTATGAGAGAGAGAGAGAGAGAGAGATTAAAGATTACTGTAGGTTACGGTAGCTACTGTAWTGAATCTTTAGTGTTATTGGAAGAGTACTATAGGTGAGCAAAAATTTTTCTGTTTGGAAAATTTTTTAATTTTCAAAATAGAAATTTCCAATACCTATTTCCCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35480</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>144449</contig_pos>
        <strand>+</strand>
        <context>ATTTTACTGT[A/G]ATTTATTGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGT</left_flank>
        <right_flank>ATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGGAAGAATCTTATAATAAGTACCTCTTATCACTAGGAATTTTTGCGGAAAATGAGGAAAAATTAGTCTCCCAAAGGTTGGTGCTCTCTTCTCTTTTACAAACAATGAGTCGAAATGTGTAAATGTCGTTTGCTTCTTCCTCCGATTTTTTGATATTAAGCAAAGCACACACATTTGAAAAAAGGCGTTAAATCAGCAATAAACAAGAGCAAAAAGATGTTAGCATCGAATGGGCTCGAACCCACGCACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCA</canonical>
            <polymorphic>ACAGGAAGAATCTTATAATAAGTACCTCTTATCACTAGGAATTTTTGCGGAAAATGAGGAAAAATTAGTCTCCCAAAGGTTGGTGCTCTCTTCTCTTTTACAAACAATGAGTCGAAATGTGTAAATGTCGTTTGCTTCTTCCTCCGATTTTTTGATATTAAGCAAAGCACACACATTTGAAAAAAGGCGTTAAATCAGCAATAAACAAGAGCAAAAAGATGTTAGCATCGAATGGGCTCGAACCCACGCACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTRATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>348 218 116 89 58 39 35 31 23 21 14 8</canonical_bands>
                <polymorphic_bands>348 307 116 58 39 35 31 23 21 14 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAGGCAATGATAAAGGATGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAAAAGTCAGAGAAGTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>ATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTRATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35481</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>144509</contig_pos>
        <strand>+</strand>
        <context>TTGAAAAGTT[A/T]TCCTGTTATA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTT</left_flank>
        <right_flank>TCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTAGTCTCCCAAAGGTTGGTGCTCTCTTCTCTTTTACAAACAATGAGTCGAAATGTGTAAATGTCGTTTGCTTCTTCCTCCGATTTTTTGATATTAAGCAAAGCACACACATTTGAAAAAAGGCGTTAAATCAGCAATAAACAAGAGCAAAAAGATGTTAGCATCGAATGGGCTCGAACCCACGCACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAA</canonical>
            <polymorphic>AAAATTAGTCTCCCAAAGGTTGGTGCTCTCTTCTCTTTTACAAACAATGAGTCGAAATGTGTAAATGTCGTTTGCTTCTTCCTCCGATTTTTTGATATTAAGCAAAGCACACACATTTGAAAAAAGGCGTTAAATCAGCAATAAACAAGAGCAAAAAGATGTTAGCATCGAATGGGCTCGAACCCACGCACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTWTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACATAAAGCACGATTTTACTG</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTCTAGACTACGTGCTGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>GACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTWTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35482</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>144682</contig_pos>
        <strand>+</strand>
        <context>TCGTGATTTT[C/T]ATGACTTGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTT</left_flank>
        <right_flank>ATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGG</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGCTCGAACCCACGCACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTT</canonical>
            <polymorphic>GGGCTCGAACCCACGCACCTCAAAATCAAAATGTGTGGGATTAATGGTGAGGAGCGTTACCACTGAGCCACGCGGGCAGCTGGAAGCTAAGGGCCATAAGGCAATGATAAAGGATGAAGAGATGGAGGAGGGGAGTAAGGGACTCGTCCGGAGAGTTTGTGTTGAAAAACTTTCTGAAATTTTAAGGCTTTTTCTAGAAACTGTAGTTTTTGTAGTTTCCATAGTATCCATGGTTTGTAGCTCGACATAAAGCACGATTTTACTGTAATTTATTGTGATTTTCATCCGGTTTTCAGATTTTCTACTTCTCTGACTTTTGAAAAGTTTTCCTGTTATATTTATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTYATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGATATAGGTTATCATCGTCATC</pcr_primer_p1>
		<pcr_primer_p2>TTTGCAAAAGAAGTTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAA</canonical_amplicon>
		<polymorphic_amplicon>AATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTYATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35483</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>145021</contig_pos>
        <strand>+</strand>
        <context>GTGCGTATTT[A/C]AAAAATGACC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATTT</left_flank>
        <right_flank>AAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTTCTAAAATATCTGGTGTCAAATGAGCACTTGAGTTCTAAAGGGGGTCTTGAGAGAAATTTCAGAAAATTCTAGAGACAAAAAGGTCGACTTTCTTCAATTTTCGATAAATTTCGGTTTTTAATTTTTAATCAGGGCATCACTGTATAGAAAAACAAGCTGAAAAACAACAACAAAAACTTTATTTTCAGAATTTTTTTCCAGATGACGTGCCGATGACATGCAACTCCTGAATTCTCTGAAAAAATCCTTTAATTTTGAATGAATTTCTTTAAAAATGTGATTGCTTTTGTCTGTAAAAACATGTATTTATTTTTAAATAAAACAAAAAAGCAGATCTGT</canonical>
            <polymorphic>TATTTTTTCAGAAACATGTAGACTAGAATGTCCCACTTATCAATGATATAGGTTATCATCGTCATCCCATTTTTCATTTTTTCACGCTTTTTATGACCTAGTTTTTCTAGAAACTAGACAACTCAGAGAACAGCACGTAGTCTAGAATTTTCGTGATTTTTATGACTTGTATTCAGCGAAAATCATTAAAGAATCTTCACTGAAAATAAGGAGGTTCGAATGTTCGCGGGGTGTAGACACCAAAGACTACGCGCAGATTCGAATTTTCAACTTCTTTTGCAAAAACCAGTGCTCGATCTCTGTCCATTCTTTGTCGTTGAATTTTCAGCTGTTAATTGAACACGTTACTTTTCGATTTTCAGCAGAATAATTATATTTTCAGCTTTTCCCCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATTTMAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGGCGTACTCTCGAGCACGTCGTCTTTTTTCTTCTAAAATATCTGGTGTCAAATGAGCACTTGAGTTCTAAAGGGGGTCTTGAGAGAAATTTCAGAAAATTCTAGAGACAAAAAGGTCGACTTTCTTCAATTTTCGATAAATTTCGGTTTTTAATTTTTAATCAGGGCATCACTGTATAGAAAAACAAGCTGAAAAACAACAACAAAAACTTTATTTTCAGAATTTTTTTCCAGATGACGTGCCGATGACATGCAACTCCTGAATTCTCTGAAAAAATCCTTTAATTTTGAATGAATTTCTTTAAAAATGTGATTGCTTTTGTCTGTAAAAACATGTATTTATTTTTAAATAAAACAAAAAAGCAGATCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAATAGGAAAATTCGACAAT</pcr_primer_p1>
		<pcr_primer_p2>CCGTATTCTGAAATCTATACGAC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATTTCAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGG</canonical_amplicon>
		<polymorphic_amplicon>CCAATAGGAAAATTCGACAATTATTTCCGGTCTCTCCCACTCAGTTTTTAGAGCTTCCGTAACAATATTTTTTCTTATCAATTTCTTTTTGTTTTAAAAAGTGCGTATTTMAAAAATGACCCATAATGACATCATCAGGAAAATTGGAAAAATACGGAAAACATTTGCAAAAAAAAAAGAAAGTTTCAATTTAAACAAATAAAAAATTGCGGGGGTTCTGTCGTATAGATTTCAGAATACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35484</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>146309</contig_pos>
        <strand></strand>
        <context>AGAGAGAAAC[G/A]AAACTATTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAAGAAAGGTCTTTGACGACATCGCTCGCGCGGTTTTCCTAGAGAGAAAC</left_flank>
        <right_flank>AAACTATTATGTTTTGTTTATTTTTTTTTGTTCGTTGATTAAATAATACA</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAANNNNNNNNNNAACAGCGTTCCAATTTGGGACAGTTCGAAAGTGCACAGTTCGATCTAGAACAGTTCGATTTTGTCCTTGTTCTGTTTTGATACTTGTTCGAGAAAGACACTGTTCTGATTTGAATCAGTTCGACTTTAGGTCTGTTCGATTTTGAAAACGTTCGAATTCGTCGTACCCCCCACCATTAATCCTCTTATTTTTCAAATTTTTCAAGTCAACCAAGTCATGAGTCGAATCGAAAATAGACAGAAAACATTGTTTTCCTGATAAGAGACATTTTTCGAATAACTAATATAATCAAACAAAACTTCAAAGAAGTACTCATCAAACTTCGAGAACACATGAATCCAACATGGCTCAGCGATGAGTGGGCGCCAGGAGAGTTGACTTTGAACCCGGAGCCGGCCAGAAAACTTTTTTATTAGGCCATTAATTGTGGCACTGATAAGAAAGGTCTTTGACGACATCGCTCGCGCGGTTTTCCTAGAGAGAAACGAAACTATTATGTTTTGTTTATTTTTTTTTGTTCGTTGATTAAATAATACAAAAAATTAGAAATTGTTGAATAAAAGTACAAAAAAAAGAAGAGGAATCGATGACTAAATGAACATGAGACGGTCAAGATTAGTGATAAAACAGGAGATTGCCTATTTGAAGGAATTTTGAACATTTCAGACTGAGAATACAAATTAAAAGGAAACGAAAGAAAATAGGGGGAGAGGAGGAAAGAACACGGTTTGAGATTTGATTGTATCGGAATTTACATTGGGACGAGTTTCAGATTTTCAAACAAACATGATGAGGGGGGATAAAAGCGAAATTAGAAAATAGAAAACAAAATAAATTAAAGATTGAGATAATTCATTCGAGATCCATTGGAACCTCTTCGGTTTTGTCTTGATGATCATCAGCGATTGAGGCGATTTCAGTGATTTGTAGTGGTGGCTTGACTGGCTCAGGGGCGGCTTCTTGCTCTTCTTTCTCGGCAGTTGGCAC</canonical>
            <polymorphic>AAANNNNNNNNNNAACAGCGTTCCAATTTGGGACAGTTCGAAAGTGCACAGTTCGATCTAGAACAGTTCGATTTTGTCCTTGTTCTGTTTTGATACTTGTTCGAGAAAGACACTGTTCTGATTTGAATCAGTTCGACTTTAGGTCTGTTCGATTTTGAAAACGTTCGAATTCGTCGTACCCCCCACCATTAATCCTCTTATTTTTCAAATTTTTCAAGTCAACCAAGTCATGAGTCGAATCGAAAATAGACAGAAAACATTGTTTTCCTGATAAGAGACATTTTTCGAATAACTAATATAATCAAACAAAACTTCAAAGAAGTACTCATCAAACTTCGAGAACACATGAATCCAACATGGCTCAGCGATGAGTGGGCGCCAGGAGAGTTGACTTTGAACCCGGAGCCGGCCAGAAAACTTTTTTATTAGGCCATTAATTGTGGCACTGATAAGAAAGGTCTTTGACGACATCGCTCGCGCGGTTTTCCTAGAGAGAAACRAAACTATTATGTTTTGTTTATTTTTTTTTGTTCGTTGATTAAATAATACAAAAAATTAGAAATTGTTGAATAAAAGTACAAAAAAAAGAAGAGGAATCGATGACTAAATGAACATGAGACGGTCAAGATTAGTGATAAAACAGGAGATTGCCTATTTGAAGGAATTTTGAACATTTCAGACTGAGAATACAAATTAAAAGGAAACGAAAGAAAATAGGGGGAGAGGAGGAAAGAACACGGTTTGAGATTTGATTGTATCGGAATTTACATTGGGACGAGTTTCAGATTTTCAAACAAACATGATGAGGGGGGATAAAAGCGAAATTAGAAAATAGAAAACAAAATAAATTAAAGATTGAGATAATTCATTCGAGATCCATTGGAACCTCTTCGGTTTTGTCTTGATGATCATCAGCGATTGAGGCGATTTCAGTGATTTGTAGTGGTGGCTTGACTGGCTCAGGGGCGGCTTCTTGCTCTTCTTTCTCGGCAGTTGGCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTAATTGTGGCACTGATAAGAA</pcr_primer_p1>
		<pcr_primer_p2>AATGTTCAAAATTCCTTCAAATA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATTAATTGTGGCACTGATAAGAAAGGTCTTTGACGACATCGCTCGCGCGGTTTTCCTAGAGAGAAACGAAACTATTATGTTTTGTTTATTTTTTTTTGTTCGTTGATTAAATAATACAAAAAATTAGAAATTGTTGAATAAAAGTACAAAAAAAAGAAGAGGAATCGATGACTAAATGAACATGAGACGGTCAAGATTAGTGATAAAACAGGAGATTGCCTATTTGAAGGAATTTTGAACATT</canonical_amplicon>
		<polymorphic_amplicon>ATTAATTGTGGCACTGATAAGAAAGGTCTTTGACGACATCGCTCGCGCGGTTTTCCTAGAGAGAAACRAAACTATTATGTTTTGTTTATTTTTTTTTGTTCGTTGATTAAATAATACAAAAAATTAGAAATTGTTGAATAAAAGTACAAAAAAAAGAAGAGGAATCGATGACTAAATGAACATGAGACGGTCAAGATTAGTGATAAAACAGGAGATTGCCTATTTGAAGGAATTTTGAACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35485</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>146321</contig_pos>
        <strand>+</strand>
        <context>AACTATTATG[A/T]TTTGTTTATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGACGACATCGCTCGCGCGGTTTTCCTAGAGAGAAACGAAACTATTATG</left_flank>
        <right_flank>TTTGTTTATTTTTTTTTGTTCGTTGATTAAATAATACAAAAAATTAGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NAACAGCGTTCCAATTTGGGACAGTTCGAAAGTGCACAGTTCGATCTAGAACAGTTCGATTTTGTCCTTGTTCTGTTTTGATACTTGTTCGAGAAAGACACTGTTCTGATTTGAATCAGTTCGACTTTAGGTCTGTTCGATTTTGAAAACGTTCGAATTCGTCGTACCCCCCACCATTAATCCTCTTATTTTTCAAATTTTTCAAGTCAACCAAGTCATGAGTCGAATCGAAAATAGACAGAAAACATTGTTTTCCTGATAAGAGACATTTTTCGAATAACTAATATAATCAAACAAAACTTCAAAGAAGTACTCATCAAACTTCGAGAACACATGAATCCAACATGGCTCAGCGATGAGTGGGCGCCAGGAGAGTTGACTTTGAACCCGGAGCCGGCCAGAAAACTTTTTTATTAGGCCATTAATTGTGGCACTGATAAGAAAGGTCTTTGACGACATCGCTCGCGCGGTTTTCCTAGAGAGAAACGAAACTATTATGTTTTGTTTATTTTTTTTTGTTCGTTGATTAAATAATACAAAAAATTAGAAATTGTTGAATAAAAGTACAAAAAAAAGAAGAGGAATCGATGACTAAATGAACATGAGACGGTCAAGATTAGTGATAAAACAGGAGATTGCCTATTTGAAGGAATTTTGAACATTTCAGACTGAGAATACAAATTAAAAGGAAACGAAAGAAAATAGGGGGAGAGGAGGAAAGAACACGGTTTGAGATTTGATTGTATCGGAATTTACATTGGGACGAGTTTCAGATTTTCAAACAAACATGATGAGGGGGGATAAAAGCGAAATTAGAAAATAGAAAACAAAATAAATTAAAGATTGAGATAATTCATTCGAGATCCATTGGAACCTCTTCGGTTTTGTCTTGATGATCATCAGCGATTGAGGCGATTTCAGTGATTTGTAGTGGTGGCTTGACTGGCTCAGGGGCGGCTTCTTGCTCTTCTTTCTCGGCAGTTGGCACGGTTTCAGGCTC</canonical>
            <polymorphic>NAACAGCGTTCCAATTTGGGACAGTTCGAAAGTGCACAGTTCGATCTAGAACAGTTCGATTTTGTCCTTGTTCTGTTTTGATACTTGTTCGAGAAAGACACTGTTCTGATTTGAATCAGTTCGACTTTAGGTCTGTTCGATTTTGAAAACGTTCGAATTCGTCGTACCCCCCACCATTAATCCTCTTATTTTTCAAATTTTTCAAGTCAACCAAGTCATGAGTCGAATCGAAAATAGACAGAAAACATTGTTTTCCTGATAAGAGACATTTTTCGAATAACTAATATAATCAAACAAAACTTCAAAGAAGTACTCATCAAACTTCGAGAACACATGAATCCAACATGGCTCAGCGATGAGTGGGCGCCAGGAGAGTTGACTTTGAACCCGGAGCCGGCCAGAAAACTTTTTTATTAGGCCATTAATTGTGGCACTGATAAGAAAGGTCTTTGACGACATCGCTCGCGCGGTTTTCCTAGAGAGAAACGAAACTATTATGWTTTGTTTATTTTTTTTTGTTCGTTGATTAAATAATACAAAAAATTAGAAATTGTTGAATAAAAGTACAAAAAAAAGAAGAGGAATCGATGACTAAATGAACATGAGACGGTCAAGATTAGTGATAAAACAGGAGATTGCCTATTTGAAGGAATTTTGAACATTTCAGACTGAGAATACAAATTAAAAGGAAACGAAAGAAAATAGGGGGAGAGGAGGAAAGAACACGGTTTGAGATTTGATTGTATCGGAATTTACATTGGGACGAGTTTCAGATTTTCAAACAAACATGATGAGGGGGGATAAAAGCGAAATTAGAAAATAGAAAACAAAATAAATTAAAGATTGAGATAATTCATTCGAGATCCATTGGAACCTCTTCGGTTTTGTCTTGATGATCATCAGCGATTGAGGCGATTTCAGTGATTTGTAGTGGTGGCTTGACTGGCTCAGGGGCGGCTTCTTGCTCTTCTTTCTCGGCAGTTGGCACGGTTTCAGGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTAATTGTGGCACTGATAAGAA</pcr_primer_p1>
		<pcr_primer_p2>AATGTTCAAAATTCCTTCAAATA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATTAATTGTGGCACTGATAAGAAAGGTCTTTGACGACATCGCTCGCGCGGTTTTCCTAGAGAGAAACGAAACTATTATGTTTTGTTTATTTTTTTTTGTTCGTTGATTAAATAATACAAAAAATTAGAAATTGTTGAATAAAAGTACAAAAAAAAGAAGAGGAATCGATGACTAAATGAACATGAGACGGTCAAGATTAGTGATAAAACAGGAGATTGCCTATTTGAAGGAATTTTGAACATT</canonical_amplicon>
		<polymorphic_amplicon>ATTAATTGTGGCACTGATAAGAAAGGTCTTTGACGACATCGCTCGCGCGGTTTTCCTAGAGAGAAACGAAACTATTATGWTTTGTTTATTTTTTTTTGTTCGTTGATTAAATAATACAAAAAATTAGAAATTGTTGAATAAAAGTACAAAAAAAAGAAGAGGAATCGATGACTAAATGAACATGAGACGGTCAAGATTAGTGATAAAACAGGAGATTGCCTATTTGAAGGAATTTTGAACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35486</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>146350</contig_pos>
        <strand></strand>
        <context>TTCGTTGATT[A/T]AATAATACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGAGAAACGAAACTATTATGTTTTGTTTATTTTTTTTTGTTCGTTGATT</left_flank>
        <right_flank>AATAATACAAAAAATTAGAAATTGTTGAATAAAAGTACAAAAAAAAGAAG</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTGCACAGTTCGATCTAGAACAGTTCGATTTTGTCCTTGTTCTGTTTTGATACTTGTTCGAGAAAGACACTGTTCTGATTTGAATCAGTTCGACTTTAGGTCTGTTCGATTTTGAAAACGTTCGAATTCGTCGTACCCCCCACCATTAATCCTCTTATTTTTCAAATTTTTCAAGTCAACCAAGTCATGAGTCGAATCGAAAATAGACAGAAAACATTGTTTTCCTGATAAGAGACATTTTTCGAATAACTAATATAATCAAACAAAACTTCAAAGAAGTACTCATCAAACTTCGAGAACACATGAATCCAACATGGCTCAGCGATGAGTGGGCGCCAGGAGAGTTGACTTTGAACCCGGAGCCGGCCAGAAAACTTTTTTATTAGGCCATTAATTGTGGCACTGATAAGAAAGGTCTTTGACGACATCGCTCGCGCGGTTTTCCTAGAGAGAAACGAAACTATTATGTTTTGTTTATTTTTTTTTGTTCGTTGATTAAATAATACAAAAAATTAGAAATTGTTGAATAAAAGTACAAAAAAAAGAAGAGGAATCGATGACTAAATGAACATGAGACGGTCAAGATTAGTGATAAAACAGGAGATTGCCTATTTGAAGGAATTTTGAACATTTCAGACTGAGAATACAAATTAAAAGGAAACGAAAGAAAATAGGGGGAGAGGAGGAAAGAACACGGTTTGAGATTTGATTGTATCGGAATTTACATTGGGACGAGTTTCAGATTTTCAAACAAACATGATGAGGGGGGATAAAAGCGAAATTAGAAAATAGAAAACAAAATAAATTAAAGATTGAGATAATTCATTCGAGATCCATTGGAACCTCTTCGGTTTTGTCTTGATGATCATCAGCGATTGAGGCGATTTCAGTGATTTGTAGTGGTGGCTTGACTGGCTCAGGGGCGGCTTCTTGCTCTTCTTTCTCGGCAGTTGGCACGGTTTCAGGCTCTTGAACTGGATCCTTCAGTTCATCAAGAG</canonical>
            <polymorphic>AAGTGCACAGTTCGATCTAGAACAGTTCGATTTTGTCCTTGTTCTGTTTTGATACTTGTTCGAGAAAGACACTGTTCTGATTTGAATCAGTTCGACTTTAGGTCTGTTCGATTTTGAAAACGTTCGAATTCGTCGTACCCCCCACCATTAATCCTCTTATTTTTCAAATTTTTCAAGTCAACCAAGTCATGAGTCGAATCGAAAATAGACAGAAAACATTGTTTTCCTGATAAGAGACATTTTTCGAATAACTAATATAATCAAACAAAACTTCAAAGAAGTACTCATCAAACTTCGAGAACACATGAATCCAACATGGCTCAGCGATGAGTGGGCGCCAGGAGAGTTGACTTTGAACCCGGAGCCGGCCAGAAAACTTTTTTATTAGGCCATTAATTGTGGCACTGATAAGAAAGGTCTTTGACGACATCGCTCGCGCGGTTTTCCTAGAGAGAAACGAAACTATTATGTTTTGTTTATTTTTTTTTGTTCGTTGATTWAATAATACAAAAAATTAGAAATTGTTGAATAAAAGTACAAAAAAAAGAAGAGGAATCGATGACTAAATGAACATGAGACGGTCAAGATTAGTGATAAAACAGGAGATTGCCTATTTGAAGGAATTTTGAACATTTCAGACTGAGAATACAAATTAAAAGGAAACGAAAGAAAATAGGGGGAGAGGAGGAAAGAACACGGTTTGAGATTTGATTGTATCGGAATTTACATTGGGACGAGTTTCAGATTTTCAAACAAACATGATGAGGGGGGATAAAAGCGAAATTAGAAAATAGAAAACAAAATAAATTAAAGATTGAGATAATTCATTCGAGATCCATTGGAACCTCTTCGGTTTTGTCTTGATGATCATCAGCGATTGAGGCGATTTCAGTGATTTGTAGTGGTGGCTTGACTGGCTCAGGGGCGGCTTCTTGCTCTTCTTTCTCGGCAGTTGGCACGGTTTCAGGCTCTTGAACTGGATCCTTCAGTTCATCAAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>245 192 155 155 148 105</canonical_bands>
                <polymorphic_bands>260 245 192 155 148</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTAATTGTGGCACTGATAAGAA</pcr_primer_p1>
		<pcr_primer_p2>AATGTTCAAAATTCCTTCAAATA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATTAATTGTGGCACTGATAAGAAAGGTCTTTGACGACATCGCTCGCGCGGTTTTCCTAGAGAGAAACGAAACTATTATGTTTTGTTTATTTTTTTTTGTTCGTTGATTAAATAATACAAAAAATTAGAAATTGTTGAATAAAAGTACAAAAAAAAGAAGAGGAATCGATGACTAAATGAACATGAGACGGTCAAGATTAGTGATAAAACAGGAGATTGCCTATTTGAAGGAATTTTGAACATT</canonical_amplicon>
		<polymorphic_amplicon>ATTAATTGTGGCACTGATAAGAAAGGTCTTTGACGACATCGCTCGCGCGGTTTTCCTAGAGAGAAACGAAACTATTATGTTTTGTTTATTTTTTTTTGTTCGTTGATTWAATAATACAAAAAATTAGAAATTGTTGAATAAAAGTACAAAAAAAAGAAGAGGAATCGATGACTAAATGAACATGAGACGGTCAAGATTAGTGATAAAACAGGAGATTGCCTATTTGAAGGAATTTTGAACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35487</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>179260</contig_pos>
        <strand>+</strand>
        <context>CTTTTYACAT[C/T]TTTTTMAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACAT</left_flank>
        <right_flank>TTTTTAAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTAGAAGGCGTTGTGAATGAACCAAGGACGGATTTGAAGCCTTGCAAATTCTCGACATCCTGGAACCAACACAAATAAGTCATTTCCTTCCTGATGGCATTCGTGAAGCAGTTTAATAACTGAGGTTTCCTCCGAGTATACCAGAAATAGGTAGGTGTACGATGTCACTGGAATAGGCTTTCCGCAGACTAAAATATTTTTCGGCCCTCTCTCATAACCGTCTATAAATAATTATCTTCATTTTTAAGGCCTTTTTTGAGTCAAAAACCCATTTTCTTACCTTTTTTATAGTATCCATTGGCATACATGAAGACCCAATATTTTTTTATTTCGTTAAAAACCTTTTTTTCAAATATTTAGGTCTTTAAAAATCTTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTTCCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTTAAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGAGCCAAAAGAGAGAGCATAATAATCACAGAAGAATTGACTTTTTTGATCCAGGAAATGGCAAAAAATAGAGAAAAAAAACTGAATGTGTATAGATGGCAAGTAAGAGAGACATTATGGAAAATCGAGAGAATTAGAGAAAAAAAAGTGAAATAATCGAAATATTAATCAACTCCTGAGAAGATTTCCGAGTTTTCAATAGCCGTTAACAGTTTTGATTTGAGTTCTTTGAATGTTGTGTAAGGCGGCAGGTCGAGGCGATTGAAGCTGAAAAAAGGTAAAATTTAAATTGTTTCGTAATGCAATTGCGCTTTATTGAGAGTCTACTTACCATGTATGCGCTCTTGGCAACATATCGGCACTTCCCCAACGCTCGATCGTAAACTTTTGAAG</canonical>
            <polymorphic>ATGTAGAAGGCGTTGTGAATGAACCAAGGACGGATTTGAAGCCTTGCAAATTCTCGACATCCTGGAACCAACACAAATAAGTCATTTCCTTCCTGATGGCATTCGTGAAGCAGTTTAATAACTGAGGTTTCCTCCGAGTATACCAGAAATAGGTAGGTGTACGATGTCACTGGAATAGGCTTTCCGCAGACTAAAATATTTTTCGGCCCTCTCTCATAACCGTCTATAAATAATTATCTTCATTTTTAAGGCCTTTTTTGAGTCAAAAACCCATTTTCTTACCTTTTTTATAGTATCCATTGGCATACATGAAGACCCAATATTTTTTTATTTCGTTAAAAACCTTTTTTTCAAATATTTAGGTCTTTAAAAATCTTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTTCCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATYTTTTTAAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGAGCCAAAAGAGAGAGCATAATAATCACAGAAGAATTGACTTTTTTGATCCAGGAAATGGCAAAAAATAGAGAAAAAAAACTGAATGTGTATAGATGGCAAGTAAGAGAGACATTATGGAAAATCGAGAGAATTAGAGAAAAAAAAGTGAAATAATCGAAATATTAATCAACTCCTGAGAAGATTTCCGAGTTTTCAATAGCCGTTAACAGTTTTGATTTGAGTTCTTTGAATGTTGTGTAAGGCGGCAGGTCGAGGCGATTGAAGCTGAAAAAAGGTAAAATTTAAATTGTTTCGTAATGCAATTGCGCTTTATTGAGAGTCTACTTACCATGTATGCGCTCTTGGCAACATATCGGCACTTCCCCAACGCTCGATCGTAAACTTTTGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTTTATTCTGAAGCGATTTT</pcr_primer_p1>
		<pcr_primer_p2>TCCTTGACATCTGTTTTATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>TTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTTCCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTTAAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGA</canonical_amplicon>
		<polymorphic_amplicon>TTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTTCCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATYTTTTTAAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35488</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>179271</contig_pos>
        <strand>+</strand>
        <context>TTTTTMAAAC[A/C]ACATTCGGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTTAAAAC</left_flank>
        <right_flank>ACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGTGAATGAACCAAGGACGGATTTGAAGCCTTGCAAATTCTCGACATCCTGGAACCAACACAAATAAGTCATTTCCTTCCTGATGGCATTCGTGAAGCAGTTTAATAACTGAGGTTTCCTCCGAGTATACCAGAAATAGGTAGGTGTACGATGTCACTGGAATAGGCTTTCCGCAGACTAAAATATTTTTCGGCCCTCTCTCATAACCGTCTATAAATAATTATCTTCATTTTTAAGGCCTTTTTTGAGTCAAAAACCCATTTTCTTACCTTTTTTATAGTATCCATTGGCATACATGAAGACCCAATATTTTTTTATTTCGTTAAAAACCTTTTTTTCAAATATTTAGGTCTTTAAAAATCTTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTTCCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTTAAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGAGCCAAAAGAGAGAGCATAATAATCACAGAAGAATTGACTTTTTTGATCCAGGAAATGGCAAAAAATAGAGAAAAAAAACTGAATGTGTATAGATGGCAAGTAAGAGAGACATTATGGAAAATCGAGAGAATTAGAGAAAAAAAAGTGAAATAATCGAAATATTAATCAACTCCTGAGAAGATTTCCGAGTTTTCAATAGCCGTTAACAGTTTTGATTTGAGTTCTTTGAATGTTGTGTAAGGCGGCAGGTCGAGGCGATTGAAGCTGAAAAAAGGTAAAATTTAAATTGTTTCGTAATGCAATTGCGCTTTATTGAGAGTCTACTTACCATGTATGCGCTCTTGGCAACATATCGGCACTTCCCCAACGCTCGATCGTAAACTTTTGAAGTCCATTCGATC</canonical>
            <polymorphic>GTTGTGAATGAACCAAGGACGGATTTGAAGCCTTGCAAATTCTCGACATCCTGGAACCAACACAAATAAGTCATTTCCTTCCTGATGGCATTCGTGAAGCAGTTTAATAACTGAGGTTTCCTCCGAGTATACCAGAAATAGGTAGGTGTACGATGTCACTGGAATAGGCTTTCCGCAGACTAAAATATTTTTCGGCCCTCTCTCATAACCGTCTATAAATAATTATCTTCATTTTTAAGGCCTTTTTTGAGTCAAAAACCCATTTTCTTACCTTTTTTATAGTATCCATTGGCATACATGAAGACCCAATATTTTTTTATTTCGTTAAAAACCTTTTTTTCAAATATTTAGGTCTTTAAAAATCTTATTTTATTCTGAAGCGATTTTATTTTTTCGACCTCCCGTACTGTAGTGCATTTCCGCGTAGCGGTGCATGTGCACCGATATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTTAAAACMACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGAGCCAAAAGAGAGAGCATAATAATCACAGAAGAATTGACTTTTTTGATCCAGGAAATGGCAAAAAATAGAGAAAAAAAACTGAATGTGTATAGATGGCAAGTAAGAGAGACATTATGGAAAATCGAGAGAATTAGAGAAAAAAAAGTGAAATAATCGAAATATTAATCAACTCCTGAGAAGATTTCCGAGTTTTCAATAGCCGTTAACAGTTTTGATTTGAGTTCTTTGAATGTTGTGTAAGGCGGCAGGTCGAGGCGATTGAAGCTGAAAAAAGGTAAAATTTAAATTGTTTCGTAATGCAATTGCGCTTTATTGAGAGTCTACTTACCATGTATGCGCTCTTGGCAACATATCGGCACTTCCCCAACGCTCGATCGTAAACTTTTGAAGTCCATTCGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACACCGCTTGCATTTAAC</pcr_primer_p1>
		<pcr_primer_p2>GCCATCTATACACATTCAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTTAAAACAACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGAGCCAAAAGAGAGAGCATAATAATCACAGAAGAATTGACTTTTTTGATCCAGGAAATGGCAAAAAATAGAGAAAAAAAACTGAATGTGTATAGATGGC</canonical_amplicon>
		<polymorphic_amplicon>ATACACCGCTTGCATTTAACGAACAATACCGAACTTTTCACATTTTTTTAAAACMACATTCGGGTGTTGAGTTAGACAAACCTGTACACTTTTTTCGAGGATGAGAAAAAAAAAAGAGAAAGAGCAAAAATGAAAATAAAACAGATGTCAAGGAGCCAAAAGAGAGAGCATAATAATCACAGAAGAATTGACTTTTTTGATCCAGGAAATGGCAAAAAATAGAGAAAAAAAACTGAATGTGTATAGATGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35489</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>183495</contig_pos>
        <strand>+</strand>
        <context>AAAATTCGTC[A/T]ATAGAAAATG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGTTTTTTGATTATAAAAAAAGTTTTATCAGACGAATTAAAAATTCGTC</left_flank>
        <right_flank>ATAGAAAATGTAGAGAAAATAATTGCGGTTTTTTTTGAGCTATAGAACTC</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTATGCACAAGGAGCACTTTTTGAATTGACTCCCAAAAAAGTGTACTCATTTTCAAATAGGTGAGTATGTGAGTGTAATGTACTCTACTTGGAGCATCTCTAAAAGAGCACACCTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGAGATAGAAAGTAGCTTAATCGTTTCGACAAATATTTGAAAGAAGAATGAAAAAAGGAACGATTTTCCTAGTGTAATTATAGAAAGTTCCTGAACTACAAAAATGAGAAAAAATTCCAATCCTTATGATTCATGCCAAAAATCAAAAAATGCTGGATCGAAATTTCTAGAACATAATTTTGAAATGTGACATGTTGAATATTACGACCGATTGTTGATATTCGTGTTGATCTACAATCCTTGGGTCCTCATGAAATTGCACAAAATAGCATTTTACGTTGTTTTTTGATTATAAAAAAAGTTTTATCAGACGAATTAAAAATTCGTCTATAGAAAATGTAGAGAAAATAATTGCGGTTTTTTTTGAGCTATAGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTTTAAAAAACATTCAAAAATGACCATTTTTGACATTTTTCTTCCGGAAAACGACCATACATGAATCTATAACCACTAATTAATTTTTAAAGAATTATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAAATTCTGAAAATATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGCATTGAAAAAATACTAAAAACTACAGTAATCTCAAAATTTTTAAAATTCAAAATTTGACACCTAAACTTGAAAATCCAATTAAGCGATAATTTTCAGATTCCTCAGATTCGTATTGAAAAAATCAACGTTTTCAAAAAGTCAAGACTACCGTAACCCTTCCCCTTCTGATA</canonical>
            <polymorphic>TATTATGCACAAGGAGCACTTTTTGAATTGACTCCCAAAAAAGTGTACTCATTTTCAAATAGGTGAGTATGTGAGTGTAATGTACTCTACTTGGAGCATCTCTAAAAGAGCACACCTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGAGATAGAAAGTAGCTTAATCGTTTCGACAAATATTTGAAAGAAGAATGAAAAAAGGAACGATTTTCCTAGTGTAATTATAGAAAGTTCCTGAACTACAAAAATGAGAAAAAATTCCAATCCTTATGATTCATGCCAAAAATCAAAAAATGCTGGATCGAAATTTCTAGAACATAATTTTGAAATGTGACATGTTGAATATTACGACCGATTGTTGATATTCGTGTTGATCTACAATCCTTGGGTCCTCATGAAATTGCACAAAATAGCATTTTACGTTGTTTTTTGATTATAAAAAAAGTTTTATCAGACGAATTAAAAATTCGTCWATAGAAAATGTAGAGAAAATAATTGCGGTTTTTTTTGAGCTATAGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTTTAAAAAACATTCAAAAATGACCATTTTTGACATTTTTCTTCCGGAAAACGACCATACATGAATCTATAACCACTAATTAATTTTTAAAGAATTATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAAATTCTGAAAATATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGCATTGAAAAAATACTAAAAACTACAGTAATCTCAAAATTTTTAAAATTCAAAATTTGACACCTAAACTTGAAAATCCAATTAAGCGATAATTTTCAGATTCCTCAGATTCGTATTGAAAAAATCAACGTTTTCAAAAAGTCAAGACTACCGTAACCCTTCCCCTTCTGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>499 238 150 72 41</canonical_bands>
                <polymorphic_bands>540 238 150 72</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGTTGATATTCGTGTTGATCT</pcr_primer_p1>
		<pcr_primer_p2>AAGAAAAATGTCAAAAATGGTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTGTTGATATTCGTGTTGATCTACAATCCTTGGGTCCTCATGAAATTGCACAAAATAGCATTTTACGTTGTTTTTTGATTATAAAAAAAGTTTTATCAGACGAATTAAAAATTCGTCTATAGAAAATGTAGAGAAAATAATTGCGGTTTTTTTTGAGCTATAGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTTTAAAAAACATTCAAAAATGACCATTTTTGACATTTTTCTT</canonical_amplicon>
		<polymorphic_amplicon>ATTGTTGATATTCGTGTTGATCTACAATCCTTGGGTCCTCATGAAATTGCACAAAATAGCATTTTACGTTGTTTTTTGATTATAAAAAAAGTTTTATCAGACGAATTAAAAATTCGTCWATAGAAAATGTAGAGAAAATAATTGCGGTTTTTTTTGAGCTATAGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTTTAAAAAACATTCAAAAATGACCATTTTTGACATTTTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35490</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>183576</contig_pos>
        <strand>+</strand>
        <context>AAGAGGAGAT[A/C]GATTTTTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTTTGAGCTATAGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGAT</left_flank>
        <right_flank>GATTTTTTCTTTAAAAAACATTCAAAAATGACCATTTTTGACATTTTTCT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACTCTACTTGGAGCATCTCTAAAAGAGCACACCTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGAGATAGAAAGTAGCTTAATCGTTTCGACAAATATTTGAAAGAAGAATGAAAAAAGGAACGATTTTCCTAGTGTAATTATAGAAAGTTCCTGAACTACAAAAATGAGAAAAAATTCCAATCCTTATGATTCATGCCAAAAATCAAAAAATGCTGGATCGAAATTTCTAGAACATAATTTTGAAATGTGACATGTTGAATATTACGACCGATTGTTGATATTCGTGTTGATCTACAATCCTTGGGTCCTCATGAAATTGCACAAAATAGCATTTTACGTTGTTTTTTGATTATAAAAAAAGTTTTATCAGACGAATTAAAAATTCGTCTATAGAAAATGTAGAGAAAATAATTGCGGTTTTTTTTGAGCTATAGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTTTAAAAAACATTCAAAAATGACCATTTTTGACATTTTTCTTCCGGAAAACGACCATACATGAATCTATAACCACTAATTAATTTTTAAAGAATTATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAAATTCTGAAAATATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGCATTGAAAAAATACTAAAAACTACAGTAATCTCAAAATTTTTAAAATTCAAAATTTGACACCTAAACTTGAAAATCCAATTAAGCGATAATTTTCAGATTCCTCAGATTCGTATTGAAAAAATCAACGTTTTCAAAAAGTCAAGACTACCGTAACCCTTCCCCTTCTGATAATACAGTAATCCCTAATTCTACAGTAAACTGAGAACTTCGACAATTTAAAGAAATTGAAATTTGCCCAAACTGTAGTGAAA</canonical>
            <polymorphic>GTACTCTACTTGGAGCATCTCTAAAAGAGCACACCTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGAGATAGAAAGTAGCTTAATCGTTTCGACAAATATTTGAAAGAAGAATGAAAAAAGGAACGATTTTCCTAGTGTAATTATAGAAAGTTCCTGAACTACAAAAATGAGAAAAAATTCCAATCCTTATGATTCATGCCAAAAATCAAAAAATGCTGGATCGAAATTTCTAGAACATAATTTTGAAATGTGACATGTTGAATATTACGACCGATTGTTGATATTCGTGTTGATCTACAATCCTTGGGTCCTCATGAAATTGCACAAAATAGCATTTTACGTTGTTTTTTGATTATAAAAAAAGTTTTATCAGACGAATTAAAAATTCGTCTATAGAAAATGTAGAGAAAATAATTGCGGTTTTTTTTGAGCTATAGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATMGATTTTTTCTTTAAAAAACATTCAAAAATGACCATTTTTGACATTTTTCTTCCGGAAAACGACCATACATGAATCTATAACCACTAATTAATTTTTAAAGAATTATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAAATTCTGAAAATATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGCATTGAAAAAATACTAAAAACTACAGTAATCTCAAAATTTTTAAAATTCAAAATTTGACACCTAAACTTGAAAATCCAATTAAGCGATAATTTTCAGATTCCTCAGATTCGTATTGAAAAAATCAACGTTTTCAAAAAGTCAAGACTACCGTAACCCTTCCCCTTCTGATAATACAGTAATCCCTAATTCTACAGTAAACTGAGAACTTCGACAATTTAAAGAAATTGAAATTTGCCCAAACTGTAGTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCATGAAATTGCACAAAATAG</pcr_primer_p1>
		<pcr_primer_p2>GTGGTTATAGATTCATGTATGGTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTCATGAAATTGCACAAAATAGCATTTTACGTTGTTTTTTGATTATAAAAAAAGTTTTATCAGACGAATTAAAAATTCGTCTATAGAAAATGTAGAGAAAATAATTGCGGTTTTTTTTGAGCTATAGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTTTAAAAAACATTCAAAAATGACCATTTTTGACATTTTTCTTCCGGAAAACGACCATACATGAATCTATAACCAC</canonical_amplicon>
		<polymorphic_amplicon>CTCATGAAATTGCACAAAATAGCATTTTACGTTGTTTTTTGATTATAAAAAAAGTTTTATCAGACGAATTAAAAATTCGTCTATAGAAAATGTAGAGAAAATAATTGCGGTTTTTTTTGAGCTATAGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATMGATTTTTTCTTTAAAAAACATTCAAAAATGACCATTTTTGACATTTTTCTTCCGGAAAACGACCATACATGAATCTATAACCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35491</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>183596</contig_pos>
        <strand>+</strand>
        <context>TTTAAAAAAC[A/T]TTCAAAAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTTTAAAAAAC</left_flank>
        <right_flank>TTCAAAAATGACCATTTTTGACATTTTTCTTCCGGAAAACGACCATACAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAAAAGAGCACACCTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGAGATAGAAAGTAGCTTAATCGTTTCGACAAATATTTGAAAGAAGAATGAAAAAAGGAACGATTTTCCTAGTGTAATTATAGAAAGTTCCTGAACTACAAAAATGAGAAAAAATTCCAATCCTTATGATTCATGCCAAAAATCAAAAAATGCTGGATCGAAATTTCTAGAACATAATTTTGAAATGTGACATGTTGAATATTACGACCGATTGTTGATATTCGTGTTGATCTACAATCCTTGGGTCCTCATGAAATTGCACAAAATAGCATTTTACGTTGTTTTTTGATTATAAAAAAAGTTTTATCAGACGAATTAAAAATTCGTCTATAGAAAATGTAGAGAAAATAATTGCGGTTTTTTTTGAGCTATAGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTTTAAAAAACATTCAAAAATGACCATTTTTGACATTTTTCTTCCGGAAAACGACCATACATGAATCTATAACCACTAATTAATTTTTAAAGAATTATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAAATTCTGAAAATATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGCATTGAAAAAATACTAAAAACTACAGTAATCTCAAAATTTTTAAAATTCAAAATTTGACACCTAAACTTGAAAATCCAATTAAGCGATAATTTTCAGATTCCTCAGATTCGTATTGAAAAAATCAACGTTTTCAAAAAGTCAAGACTACCGTAACCCTTCCCCTTCTGATAATACAGTAATCCCTAATTCTACAGTAAACTGAGAACTTCGACAATTTAAAGAAATTGAAATTTGCCCAAACTGTAGTGAAATTGAACAAAAACAGAGATTT</canonical>
            <polymorphic>CTAAAAGAGCACACCTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGAGATAGAAAGTAGCTTAATCGTTTCGACAAATATTTGAAAGAAGAATGAAAAAAGGAACGATTTTCCTAGTGTAATTATAGAAAGTTCCTGAACTACAAAAATGAGAAAAAATTCCAATCCTTATGATTCATGCCAAAAATCAAAAAATGCTGGATCGAAATTTCTAGAACATAATTTTGAAATGTGACATGTTGAATATTACGACCGATTGTTGATATTCGTGTTGATCTACAATCCTTGGGTCCTCATGAAATTGCACAAAATAGCATTTTACGTTGTTTTTTGATTATAAAAAAAGTTTTATCAGACGAATTAAAAATTCGTCTATAGAAAATGTAGAGAAAATAATTGCGGTTTTTTTTGAGCTATAGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTTTAAAAAACWTTCAAAAATGACCATTTTTGACATTTTTCTTCCGGAAAACGACCATACATGAATCTATAACCACTAATTAATTTTTAAAGAATTATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAAATTCTGAAAATATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGCATTGAAAAAATACTAAAAACTACAGTAATCTCAAAATTTTTAAAATTCAAAATTTGACACCTAAACTTGAAAATCCAATTAAGCGATAATTTTCAGATTCCTCAGATTCGTATTGAAAAAATCAACGTTTTCAAAAAGTCAAGACTACCGTAACCCTTCCCCTTCTGATAATACAGTAATCCCTAATTCTACAGTAAACTGAGAACTTCGACAATTTAAAGAAATTGAAATTTGCCCAAACTGTAGTGAAATTGAACAAAAACAGAGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCATGAAATTGCACAAAATAG</pcr_primer_p1>
		<pcr_primer_p2>GTGGTTATAGATTCATGTATGGTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTCATGAAATTGCACAAAATAGCATTTTACGTTGTTTTTTGATTATAAAAAAAGTTTTATCAGACGAATTAAAAATTCGTCTATAGAAAATGTAGAGAAAATAATTGCGGTTTTTTTTGAGCTATAGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTTTAAAAAACATTCAAAAATGACCATTTTTGACATTTTTCTTCCGGAAAACGACCATACATGAATCTATAACCAC</canonical_amplicon>
		<polymorphic_amplicon>CTCATGAAATTGCACAAAATAGCATTTTACGTTGTTTTTTGATTATAAAAAAAGTTTTATCAGACGAATTAAAAATTCGTCTATAGAAAATGTAGAGAAAATAATTGCGGTTTTTTTTGAGCTATAGAACTCCTAGAAATGTCAAAAACTGAAAGAGGAGATAGATTTTTTCTTTAAAAAACWTTCAAAAATGACCATTTTTGACATTTTTCTTCCGGAAAACGACCATACATGAATCTATAACCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35492</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>186382</contig_pos>
        <strand></strand>
        <context>ggttcctata[C/A]gaaagatmaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CTCTAAAAGCCTATCTGCGCGCTTAAAGCTCCATTATTTCGGTTCCTATA</left_flank>
        <right_flank>GAAAGATAAAAATGTGGTCAACTGATAAATAGTTTATCATAATATCACCA</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATTTTGCCAGAGAGCTCAAAAATGGGAAAACCAACCAACAACAAACAACAACAAGAACCACCAAATTTTCAATTCTCCATTCTATTCGATTGTCATTTTTTGTTTGTTAGTGACCTGGTCCAATATGATTTCGGCCTTATTGTCATTATTATTTTCTGTGGTCATGTAGTCGTCGGTTACAAGGGGTGTCTGCTAGCTCATCTTCATTAGTTCTGTACCAGTTGGAGAATAAGCTAATGAAATTGTTTTTGTATAGATCTTTGAAGCAGCTAGTGAAAACTTGAGGCATAGGAAATGAGGTCTAGAGAATACTAGGAAACTGGGGAAATCTGATTTACCAAAACTTAAGGTACTAGGTCATTTAGAGCTTAAAGGAGGTACTGTAGAAACTGAGCTCTAGTTTTATTGGGAAAATTGCTCCAAAAACCACTCGACTACCGTGAATGCTCTAAAAGCCTATCTGCGCGCTTAAAGCTCCATTATTTCGGTTCCTATACGAAAGATAAAAATGTGGTCAACTGATAAATAGTTTATCATAATATCACCAATATTTTATCAATTGACAAAATTTTGATATCTTTCATAGGAACCGAGATAGTTTAGCTTAAACTACTTGTCTGGCAAAATAACCCAAACTAACCGCTGTCAACTCATTGCTAACCACCGCCGTGTCGGATGGCTCATCAGTGACCTGACTCCGATGCTCATAGTTATCCCGTCGACGACGTGTCTCCTCAATAACCGATTGCTCAGTGATGGCGTCCGTGTTGCCGCTGAAAGAAGCAGCATTCAACATTGGGGAACAAGAATGATTGGGTGGTGGAAAAGAAGTTTTTTTTATTTAAGGGAACGGAAATTGGACAATTTCTTTTCTTCTGTGTTATTGTGTATGGTTGGAAAATGAGTCATGACATTGGAAATACAAAGAAAACAATTGAAAATGCGCTCTATTGGTAATAATAAAATTTTTTGAGATTATATAGGATTCAAAATCCTA</canonical>
            <polymorphic>GAAATTTTGCCAGAGAGCTCAAAAATGGGAAAACCAACCAACAACAAACAACAACAAGAACCACCAAATTTTCAATTCTCCATTCTATTCGATTGTCATTTTTTGTTTGTTAGTGACCTGGTCCAATATGATTTCGGCCTTATTGTCATTATTATTTTCTGTGGTCATGTAGTCGTCGGTTACAAGGGGTGTCTGCTAGCTCATCTTCATTAGTTCTGTACCAGTTGGAGAATAAGCTAATGAAATTGTTTTTGTATAGATCTTTGAAGCAGCTAGTGAAAACTTGAGGCATAGGAAATGAGGTCTAGAGAATACTAGGAAACTGGGGAAATCTGATTTACCAAAACTTAAGGTACTAGGTCATTTAGAGCTTAAAGGAGGTACTGTAGAAACTGAGCTCTAGTTTTATTGGGAAAATTGCTCCAAAAACCACTCGACTACCGTGAATGCTCTAAAAGCCTATCTGCGCGCTTAAAGCTCCATTATTTCGGTTCCTATAMGAAAGATAAAAATGTGGTCAACTGATAAATAGTTTATCATAATATCACCAATATTTTATCAATTGACAAAATTTTGATATCTTTCATAGGAACCGAGATAGTTTAGCTTAAACTACTTGTCTGGCAAAATAACCCAAACTAACCGCTGTCAACTCATTGCTAACCACCGCCGTGTCGGATGGCTCATCAGTGACCTGACTCCGATGCTCATAGTTATCCCGTCGACGACGTGTCTCCTCAATAACCGATTGCTCAGTGATGGCGTCCGTGTTGCCGCTGAAAGAAGCAGCATTCAACATTGGGGAACAAGAATGATTGGGTGGTGGAAAAGAAGTTTTTTTTATTTAAGGGAACGGAAATTGGACAATTTCTTTTCTTCTGTGTTATTGTGTATGGTTGGAAAATGAGTCATGACATTGGAAATACAAAGAAAACAATTGAAAATGCGCTCTATTGGTAATAATAAAATTTTTTGAGATTATATAGGATTCAAAATCCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTCTAGTTTTATTGGGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGCGGTTAGTTTGGGTTATT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGCTCTAGTTTTATTGGGAAAATTGCTCCAAAAACCACTCGACTACCGTGAATGCTCTAAAAGCCTATCTGCGCGCTTAAAGCTCCATTATTTCGGTTCCTATACGAAAGATAAAAATGTGGTCAACTGATAAATAGTTTATCATAATATCACCAATATTTTATCAATTGACAAAATTTTGATATCTTTCATAGGAACCGAGATAGTTTAGCTTAAACTACTTGTCTGGCAAAATAACCCAAACTAACCGCT</canonical_amplicon>
		<polymorphic_amplicon>AGCTCTAGTTTTATTGGGAAAATTGCTCCAAAAACCACTCGACTACCGTGAATGCTCTAAAAGCCTATCTGCGCGCTTAAAGCTCCATTATTTCGGTTCCTATAMGAAAGATAAAAATGTGGTCAACTGATAAATAGTTTATCATAATATCACCAATATTTTATCAATTGACAAAATTTTGATATCTTTCATAGGAACCGAGATAGTTTAGCTTAAACTACTTGTCTGGCAAAATAACCCAAACTAACCGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35493</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>186390</contig_pos>
        <strand></strand>
        <context>tamgaaagat[A/C]aaaatgtggt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCCTATCTGCGCGCTTAAAGCTCCATTATTTCGGTTCCTATACGAAAGAT</left_flank>
        <right_flank>AAAATGTGGTCAACTGATAAATAGTTTATCATAATATCACCAATATTTTA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCAGAGAGCTCAAAAATGGGAAAACCAACCAACAACAAACAACAACAAGAACCACCAAATTTTCAATTCTCCATTCTATTCGATTGTCATTTTTTGTTTGTTAGTGACCTGGTCCAATATGATTTCGGCCTTATTGTCATTATTATTTTCTGTGGTCATGTAGTCGTCGGTTACAAGGGGTGTCTGCTAGCTCATCTTCATTAGTTCTGTACCAGTTGGAGAATAAGCTAATGAAATTGTTTTTGTATAGATCTTTGAAGCAGCTAGTGAAAACTTGAGGCATAGGAAATGAGGTCTAGAGAATACTAGGAAACTGGGGAAATCTGATTTACCAAAACTTAAGGTACTAGGTCATTTAGAGCTTAAAGGAGGTACTGTAGAAACTGAGCTCTAGTTTTATTGGGAAAATTGCTCCAAAAACCACTCGACTACCGTGAATGCTCTAAAAGCCTATCTGCGCGCTTAAAGCTCCATTATTTCGGTTCCTATACGAAAGATAAAAATGTGGTCAACTGATAAATAGTTTATCATAATATCACCAATATTTTATCAATTGACAAAATTTTGATATCTTTCATAGGAACCGAGATAGTTTAGCTTAAACTACTTGTCTGGCAAAATAACCCAAACTAACCGCTGTCAACTCATTGCTAACCACCGCCGTGTCGGATGGCTCATCAGTGACCTGACTCCGATGCTCATAGTTATCCCGTCGACGACGTGTCTCCTCAATAACCGATTGCTCAGTGATGGCGTCCGTGTTGCCGCTGAAAGAAGCAGCATTCAACATTGGGGAACAAGAATGATTGGGTGGTGGAAAAGAAGTTTTTTTTATTTAAGGGAACGGAAATTGGACAATTTCTTTTCTTCTGTGTTATTGTGTATGGTTGGAAAATGAGTCATGACATTGGAAATACAAAGAAAACAATTGAAAATGCGCTCTATTGGTAATAATAAAATTTTTTGAGATTATATAGGATTCAAAATCCTATATTTCAG</canonical>
            <polymorphic>GCCAGAGAGCTCAAAAATGGGAAAACCAACCAACAACAAACAACAACAAGAACCACCAAATTTTCAATTCTCCATTCTATTCGATTGTCATTTTTTGTTTGTTAGTGACCTGGTCCAATATGATTTCGGCCTTATTGTCATTATTATTTTCTGTGGTCATGTAGTCGTCGGTTACAAGGGGTGTCTGCTAGCTCATCTTCATTAGTTCTGTACCAGTTGGAGAATAAGCTAATGAAATTGTTTTTGTATAGATCTTTGAAGCAGCTAGTGAAAACTTGAGGCATAGGAAATGAGGTCTAGAGAATACTAGGAAACTGGGGAAATCTGATTTACCAAAACTTAAGGTACTAGGTCATTTAGAGCTTAAAGGAGGTACTGTAGAAACTGAGCTCTAGTTTTATTGGGAAAATTGCTCCAAAAACCACTCGACTACCGTGAATGCTCTAAAAGCCTATCTGCGCGCTTAAAGCTCCATTATTTCGGTTCCTATACGAAAGATMAAAATGTGGTCAACTGATAAATAGTTTATCATAATATCACCAATATTTTATCAATTGACAAAATTTTGATATCTTTCATAGGAACCGAGATAGTTTAGCTTAAACTACTTGTCTGGCAAAATAACCCAAACTAACCGCTGTCAACTCATTGCTAACCACCGCCGTGTCGGATGGCTCATCAGTGACCTGACTCCGATGCTCATAGTTATCCCGTCGACGACGTGTCTCCTCAATAACCGATTGCTCAGTGATGGCGTCCGTGTTGCCGCTGAAAGAAGCAGCATTCAACATTGGGGAACAAGAATGATTGGGTGGTGGAAAAGAAGTTTTTTTTATTTAAGGGAACGGAAATTGGACAATTTCTTTTCTTCTGTGTTATTGTGTATGGTTGGAAAATGAGTCATGACATTGGAAATACAAAGAAAACAATTGAAAATGCGCTCTATTGGTAATAATAAAATTTTTTGAGATTATATAGGATTCAAAATCCTATATTTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTCTAGTTTTATTGGGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGCGGTTAGTTTGGGTTATT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGCTCTAGTTTTATTGGGAAAATTGCTCCAAAAACCACTCGACTACCGTGAATGCTCTAAAAGCCTATCTGCGCGCTTAAAGCTCCATTATTTCGGTTCCTATACGAAAGATAAAAATGTGGTCAACTGATAAATAGTTTATCATAATATCACCAATATTTTATCAATTGACAAAATTTTGATATCTTTCATAGGAACCGAGATAGTTTAGCTTAAACTACTTGTCTGGCAAAATAACCCAAACTAACCGCT</canonical_amplicon>
		<polymorphic_amplicon>AGCTCTAGTTTTATTGGGAAAATTGCTCCAAAAACCACTCGACTACCGTGAATGCTCTAAAAGCCTATCTGCGCGCTTAAAGCTCCATTATTTCGGTTCCTATACGAAAGATMAAAATGTGGTCAACTGATAAATAGTTTATCATAATATCACCAATATTTTATCAATTGACAAAATTTTGATATCTTTCATAGGAACCGAGATAGTTTAGCTTAAACTACTTGTCTGGCAAAATAACCCAAACTAACCGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35494</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>186413</contig_pos>
        <strand></strand>
        <context>actgataaat[A/T]gtttatcata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATTATTTCGGTTCCTATACGAAAGATAAAAATGTGGTCAACTGATAAAT</left_flank>
        <right_flank>GTTTATCATAATATCACCAATATTTTATCAATTGACAAAATTTTGATATC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCAACCAACAACAAACAACAACAAGAACCACCAAATTTTCAATTCTCCATTCTATTCGATTGTCATTTTTTGTTTGTTAGTGACCTGGTCCAATATGATTTCGGCCTTATTGTCATTATTATTTTCTGTGGTCATGTAGTCGTCGGTTACAAGGGGTGTCTGCTAGCTCATCTTCATTAGTTCTGTACCAGTTGGAGAATAAGCTAATGAAATTGTTTTTGTATAGATCTTTGAAGCAGCTAGTGAAAACTTGAGGCATAGGAAATGAGGTCTAGAGAATACTAGGAAACTGGGGAAATCTGATTTACCAAAACTTAAGGTACTAGGTCATTTAGAGCTTAAAGGAGGTACTGTAGAAACTGAGCTCTAGTTTTATTGGGAAAATTGCTCCAAAAACCACTCGACTACCGTGAATGCTCTAAAAGCCTATCTGCGCGCTTAAAGCTCCATTATTTCGGTTCCTATACGAAAGATAAAAATGTGGTCAACTGATAAATAGTTTATCATAATATCACCAATATTTTATCAATTGACAAAATTTTGATATCTTTCATAGGAACCGAGATAGTTTAGCTTAAACTACTTGTCTGGCAAAATAACCCAAACTAACCGCTGTCAACTCATTGCTAACCACCGCCGTGTCGGATGGCTCATCAGTGACCTGACTCCGATGCTCATAGTTATCCCGTCGACGACGTGTCTCCTCAATAACCGATTGCTCAGTGATGGCGTCCGTGTTGCCGCTGAAAGAAGCAGCATTCAACATTGGGGAACAAGAATGATTGGGTGGTGGAAAAGAAGTTTTTTTTATTTAAGGGAACGGAAATTGGACAATTTCTTTTCTTCTGTGTTATTGTGTATGGTTGGAAAATGAGTCATGACATTGGAAATACAAAGAAAACAATTGAAAATGCGCTCTATTGGTAATAATAAAATTTTTTGAGATTATATAGGATTCAAAATCCTATATTTCAGTATAAAACCAAGTTTCCAGGACC</canonical>
            <polymorphic>AACCAACCAACAACAAACAACAACAAGAACCACCAAATTTTCAATTCTCCATTCTATTCGATTGTCATTTTTTGTTTGTTAGTGACCTGGTCCAATATGATTTCGGCCTTATTGTCATTATTATTTTCTGTGGTCATGTAGTCGTCGGTTACAAGGGGTGTCTGCTAGCTCATCTTCATTAGTTCTGTACCAGTTGGAGAATAAGCTAATGAAATTGTTTTTGTATAGATCTTTGAAGCAGCTAGTGAAAACTTGAGGCATAGGAAATGAGGTCTAGAGAATACTAGGAAACTGGGGAAATCTGATTTACCAAAACTTAAGGTACTAGGTCATTTAGAGCTTAAAGGAGGTACTGTAGAAACTGAGCTCTAGTTTTATTGGGAAAATTGCTCCAAAAACCACTCGACTACCGTGAATGCTCTAAAAGCCTATCTGCGCGCTTAAAGCTCCATTATTTCGGTTCCTATACGAAAGATAAAAATGTGGTCAACTGATAAATWGTTTATCATAATATCACCAATATTTTATCAATTGACAAAATTTTGATATCTTTCATAGGAACCGAGATAGTTTAGCTTAAACTACTTGTCTGGCAAAATAACCCAAACTAACCGCTGTCAACTCATTGCTAACCACCGCCGTGTCGGATGGCTCATCAGTGACCTGACTCCGATGCTCATAGTTATCCCGTCGACGACGTGTCTCCTCAATAACCGATTGCTCAGTGATGGCGTCCGTGTTGCCGCTGAAAGAAGCAGCATTCAACATTGGGGAACAAGAATGATTGGGTGGTGGAAAAGAAGTTTTTTTTATTTAAGGGAACGGAAATTGGACAATTTCTTTTCTTCTGTGTTATTGTGTATGGTTGGAAAATGAGTCATGACATTGGAAATACAAAGAAAACAATTGAAAATGCGCTCTATTGGTAATAATAAAATTTTTTGAGATTATATAGGATTCAAAATCCTATATTTCAGTATAAAACCAAGTTTCCAGGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTCTAGTTTTATTGGGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGCGGTTAGTTTGGGTTATT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGCTCTAGTTTTATTGGGAAAATTGCTCCAAAAACCACTCGACTACCGTGAATGCTCTAAAAGCCTATCTGCGCGCTTAAAGCTCCATTATTTCGGTTCCTATACGAAAGATAAAAATGTGGTCAACTGATAAATAGTTTATCATAATATCACCAATATTTTATCAATTGACAAAATTTTGATATCTTTCATAGGAACCGAGATAGTTTAGCTTAAACTACTTGTCTGGCAAAATAACCCAAACTAACCGCT</canonical_amplicon>
		<polymorphic_amplicon>AGCTCTAGTTTTATTGGGAAAATTGCTCCAAAAACCACTCGACTACCGTGAATGCTCTAAAAGCCTATCTGCGCGCTTAAAGCTCCATTATTTCGGTTCCTATACGAAAGATAAAAATGTGGTCAACTGATAAATWGTTTATCATAATATCACCAATATTTTATCAATTGACAAAATTTTGATATCTTTCATAGGAACCGAGATAGTTTAGCTTAAACTACTTGTCTGGCAAAATAACCCAAACTAACCGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35495</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>186489</contig_pos>
        <strand></strand>
        <context>gatagtttag[C/T]ttaaaCTACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATCAATTGACAAAATTTTGATATCTTTCATAGGAACCGAGATAGTTTAG</left_flank>
        <right_flank>TTAAACTACTTGTCTGGCAAAATAACCCAAACTAACCGCTGTCAACTCAT</right_flank>
        <qual_score>47</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTAGTGACCTGGTCCAATATGATTTCGGCCTTATTGTCATTATTATTTTCTGTGGTCATGTAGTCGTCGGTTACAAGGGGTGTCTGCTAGCTCATCTTCATTAGTTCTGTACCAGTTGGAGAATAAGCTAATGAAATTGTTTTTGTATAGATCTTTGAAGCAGCTAGTGAAAACTTGAGGCATAGGAAATGAGGTCTAGAGAATACTAGGAAACTGGGGAAATCTGATTTACCAAAACTTAAGGTACTAGGTCATTTAGAGCTTAAAGGAGGTACTGTAGAAACTGAGCTCTAGTTTTATTGGGAAAATTGCTCCAAAAACCACTCGACTACCGTGAATGCTCTAAAAGCCTATCTGCGCGCTTAAAGCTCCATTATTTCGGTTCCTATACGAAAGATAAAAATGTGGTCAACTGATAAATAGTTTATCATAATATCACCAATATTTTATCAATTGACAAAATTTTGATATCTTTCATAGGAACCGAGATAGTTTAGCTTAAACTACTTGTCTGGCAAAATAACCCAAACTAACCGCTGTCAACTCATTGCTAACCACCGCCGTGTCGGATGGCTCATCAGTGACCTGACTCCGATGCTCATAGTTATCCCGTCGACGACGTGTCTCCTCAATAACCGATTGCTCAGTGATGGCGTCCGTGTTGCCGCTGAAAGAAGCAGCATTCAACATTGGGGAACAAGAATGATTGGGTGGTGGAAAAGAAGTTTTTTTTATTTAAGGGAACGGAAATTGGACAATTTCTTTTCTTCTGTGTTATTGTGTATGGTTGGAAAATGAGTCATGACATTGGAAATACAAAGAAAACAATTGAAAATGCGCTCTATTGGTAATAATAAAATTTTTTGAGATTATATAGGATTCAAAATCCTATATTTCAGTATAAAACCAAGTTTCCAGGACCATTACGAGCTGAGTTACGATCATTTGAAGTTTTGGGTGGAGAGACGCAGACAACGAGACACTCTAACTGGCTGCGT</canonical>
            <polymorphic>TGTTAGTGACCTGGTCCAATATGATTTCGGCCTTATTGTCATTATTATTTTCTGTGGTCATGTAGTCGTCGGTTACAAGGGGTGTCTGCTAGCTCATCTTCATTAGTTCTGTACCAGTTGGAGAATAAGCTAATGAAATTGTTTTTGTATAGATCTTTGAAGCAGCTAGTGAAAACTTGAGGCATAGGAAATGAGGTCTAGAGAATACTAGGAAACTGGGGAAATCTGATTTACCAAAACTTAAGGTACTAGGTCATTTAGAGCTTAAAGGAGGTACTGTAGAAACTGAGCTCTAGTTTTATTGGGAAAATTGCTCCAAAAACCACTCGACTACCGTGAATGCTCTAAAAGCCTATCTGCGCGCTTAAAGCTCCATTATTTCGGTTCCTATACGAAAGATAAAAATGTGGTCAACTGATAAATAGTTTATCATAATATCACCAATATTTTATCAATTGACAAAATTTTGATATCTTTCATAGGAACCGAGATAGTTTAGYTTAAACTACTTGTCTGGCAAAATAACCCAAACTAACCGCTGTCAACTCATTGCTAACCACCGCCGTGTCGGATGGCTCATCAGTGACCTGACTCCGATGCTCATAGTTATCCCGTCGACGACGTGTCTCCTCAATAACCGATTGCTCAGTGATGGCGTCCGTGTTGCCGCTGAAAGAAGCAGCATTCAACATTGGGGAACAAGAATGATTGGGTGGTGGAAAAGAAGTTTTTTTTATTTAAGGGAACGGAAATTGGACAATTTCTTTTCTTCTGTGTTATTGTGTATGGTTGGAAAATGAGTCATGACATTGGAAATACAAAGAAAACAATTGAAAATGCGCTCTATTGGTAATAATAAAATTTTTTGAGATTATATAGGATTCAAAATCCTATATTTCAGTATAAAACCAAGTTTCCAGGACCATTACGAGCTGAGTTACGATCATTTGAAGTTTTGGGTGGAGAGACGCAGACAACGAGACACTCTAACTGGCTGCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>433 129 98 92 80 68 37 36 27</canonical_bands>
                <polymorphic_bands>562 98 92 80 68 37 36 27</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>357 129 98 76 62 62 61 37 36 30 27 19 6</canonical_bands>
                <polymorphic_bands>357 205 98 62 62 61 37 36 30 27 19 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCCAAAAACCACTCGACTA</pcr_primer_p1>
		<pcr_primer_p2>GTGGTTAGCAATGAGTTGACA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTCCAAAAACCACTCGACTACCGTGAATGCTCTAAAAGCCTATCTGCGCGCTTAAAGCTCCATTATTTCGGTTCCTATACGAAAGATAAAAATGTGGTCAACTGATAAATAGTTTATCATAATATCACCAATATTTTATCAATTGACAAAATTTTGATATCTTTCATAGGAACCGAGATAGTTTAGCTTAAACTACTTGTCTGGCAAAATAACCCAAACTAACCGCTGTCAACTCATTGCTAACCAC</canonical_amplicon>
		<polymorphic_amplicon>CTCCAAAAACCACTCGACTACCGTGAATGCTCTAAAAGCCTATCTGCGCGCTTAAAGCTCCATTATTTCGGTTCCTATACGAAAGATAAAAATGTGGTCAACTGATAAATAGTTTATCATAATATCACCAATATTTTATCAATTGACAAAATTTTGATATCTTTCATAGGAACCGAGATAGTTTAGYTTAAACTACTTGTCTGGCAAAATAACCCAAACTAACCGCTGTCAACTCATTGCTAACCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35496</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>186698</contig_pos>
        <strand>+</strand>
        <context>ACAAGAATGA[A/T]TGGGTGGTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCGTGTTGCCGCTGAAAGAAGCAGCATTCAACATTGGGGAACAAGAATGA</left_flank>
        <right_flank>TGGGTGGTGGAAAAGAAGTTTTTTTTATTTAAGGGAACGGAAATTGGACA</right_flank>
        <qual_score>149</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGAAACTGGGGAAATCTGATTTACCAAAACTTAAGGTACTAGGTCATTTAGAGCTTAAAGGAGGTACTGTAGAAACTGAGCTCTAGTTTTATTGGGAAAATTGCTCCAAAAACCACTCGACTACCGTGAATGCTCTAAAAGCCTATCTGCGCGCTTAAAGCTCCATTATTTCGGTTCCTATACGAAAGATAAAAATGTGGTCAACTGATAAATAGTTTATCATAATATCACCAATATTTTATCAATTGACAAAATTTTGATATCTTTCATAGGAACCGAGATAGTTTAGCTTAAACTACTTGTCTGGCAAAATAACCCAAACTAACCGCTGTCAACTCATTGCTAACCACCGCCGTGTCGGATGGCTCATCAGTGACCTGACTCCGATGCTCATAGTTATCCCGTCGACGACGTGTCTCCTCAATAACCGATTGCTCAGTGATGGCGTCCGTGTTGCCGCTGAAAGAAGCAGCATTCAACATTGGGGAACAAGAATGATTGGGTGGTGGAAAAGAAGTTTTTTTTATTTAAGGGAACGGAAATTGGACAATTTCTTTTCTTCTGTGTTATTGTGTATGGTTGGAAAATGAGTCATGACATTGGAAATACAAAGAAAACAATTGAAAATGCGCTCTATTGGTAATAATAAAATTTTTTGAGATTATATAGGATTCAAAATCCTATATTTCAGTATAAAACCAAGTTTCCAGGACCATTACGAGCTGAGTTACGATCATTTGAAGTTTTGGGTGGAGAGACGCAGACAACGAGACACTCTAACTGGCTGCGTCTGTCCTCTATATCTCAGCTGTGAATAGAGCTAGAGACGTGGTTCTTTATGGGAAAAATAACTCATCGAAAATACTAAGTTATAGTTTGAAAACCAAGTTTATAAGACATTTATGATCCGAGATATAGCTCTTTGAAGTTTCGAAGAGACGCAGACAGTCAGAGTGTCTCGTTGTCTGCGTCTCTTCTATTCAAAACTTCAGATGAGCA</canonical>
            <polymorphic>AGGAAACTGGGGAAATCTGATTTACCAAAACTTAAGGTACTAGGTCATTTAGAGCTTAAAGGAGGTACTGTAGAAACTGAGCTCTAGTTTTATTGGGAAAATTGCTCCAAAAACCACTCGACTACCGTGAATGCTCTAAAAGCCTATCTGCGCGCTTAAAGCTCCATTATTTCGGTTCCTATACGAAAGATAAAAATGTGGTCAACTGATAAATAGTTTATCATAATATCACCAATATTTTATCAATTGACAAAATTTTGATATCTTTCATAGGAACCGAGATAGTTTAGCTTAAACTACTTGTCTGGCAAAATAACCCAAACTAACCGCTGTCAACTCATTGCTAACCACCGCCGTGTCGGATGGCTCATCAGTGACCTGACTCCGATGCTCATAGTTATCCCGTCGACGACGTGTCTCCTCAATAACCGATTGCTCAGTGATGGCGTCCGTGTTGCCGCTGAAAGAAGCAGCATTCAACATTGGGGAACAAGAATGAWTGGGTGGTGGAAAAGAAGTTTTTTTTATTTAAGGGAACGGAAATTGGACAATTTCTTTTCTTCTGTGTTATTGTGTATGGTTGGAAAATGAGTCATGACATTGGAAATACAAAGAAAACAATTGAAAATGCGCTCTATTGGTAATAATAAAATTTTTTGAGATTATATAGGATTCAAAATCCTATATTTCAGTATAAAACCAAGTTTCCAGGACCATTACGAGCTGAGTTACGATCATTTGAAGTTTTGGGTGGAGAGACGCAGACAACGAGACACTCTAACTGGCTGCGTCTGTCCTCTATATCTCAGCTGTGAATAGAGCTAGAGACGTGGTTCTTTATGGGAAAAATAACTCATCGAAAATACTAAGTTATAGTTTGAAAACCAAGTTTATAAGACATTTATGATCCGAGATATAGCTCTTTGAAGTTTCGAAGAGACGCAGACAGTCAGAGTGTCTCGTTGTCTGCGTCTCTTCTATTCAAAACTTCAGATGAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCAACTCATTGCTAACCAC</pcr_primer_p1>
		<pcr_primer_p2>CCATACACAATAACACAGAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTCAACTCATTGCTAACCACCGCCGTGTCGGATGGCTCATCAGTGACCTGACTCCGATGCTCATAGTTATCCCGTCGACGACGTGTCTCCTCAATAACCGATTGCTCAGTGATGGCGTCCGTGTTGCCGCTGAAAGAAGCAGCATTCAACATTGGGGAACAAGAATGATTGGGTGGTGGAAAAGAAGTTTTTTTTATTTAAGGGAACGGAAATTGGACAATTTCTTTTCTTCTGTGTTATTGTGTATGG</canonical_amplicon>
		<polymorphic_amplicon>TGTCAACTCATTGCTAACCACCGCCGTGTCGGATGGCTCATCAGTGACCTGACTCCGATGCTCATAGTTATCCCGTCGACGACGTGTCTCCTCAATAACCGATTGCTCAGTGATGGCGTCCGTGTTGCCGCTGAAAGAAGCAGCATTCAACATTGGGGAACAAGAATGAWTGGGTGGTGGAAAAGAAGTTTTTTTTATTTAAGGGAACGGAAATTGGACAATTTCTTTTCTTCTGTGTTATTGTGTATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35497</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>186751</contig_pos>
        <strand>+</strand>
        <context>ATTGGACAAT[G/T]TCTTTTCTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGTGGTGGAAAAGAAGTTTTTTTTATTTAAGGGAACGGAAATTGGACAAT</left_flank>
        <right_flank>TCTTTTCTTCTGTGTTATTGTGTATGGTTGGAAAATGAGTCATGACATTG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTTAAAGGAGGTACTGTAGAAACTGAGCTCTAGTTTTATTGGGAAAATTGCTCCAAAAACCACTCGACTACCGTGAATGCTCTAAAAGCCTATCTGCGCGCTTAAAGCTCCATTATTTCGGTTCCTATACGAAAGATAAAAATGTGGTCAACTGATAAATAGTTTATCATAATATCACCAATATTTTATCAATTGACAAAATTTTGATATCTTTCATAGGAACCGAGATAGTTTAGCTTAAACTACTTGTCTGGCAAAATAACCCAAACTAACCGCTGTCAACTCATTGCTAACCACCGCCGTGTCGGATGGCTCATCAGTGACCTGACTCCGATGCTCATAGTTATCCCGTCGACGACGTGTCTCCTCAATAACCGATTGCTCAGTGATGGCGTCCGTGTTGCCGCTGAAAGAAGCAGCATTCAACATTGGGGAACAAGAATGATTGGGTGGTGGAAAAGAAGTTTTTTTTATTTAAGGGAACGGAAATTGGACAATTTCTTTTCTTCTGTGTTATTGTGTATGGTTGGAAAATGAGTCATGACATTGGAAATACAAAGAAAACAATTGAAAATGCGCTCTATTGGTAATAATAAAATTTTTTGAGATTATATAGGATTCAAAATCCTATATTTCAGTATAAAACCAAGTTTCCAGGACCATTACGAGCTGAGTTACGATCATTTGAAGTTTTGGGTGGAGAGACGCAGACAACGAGACACTCTAACTGGCTGCGTCTGTCCTCTATATCTCAGCTGTGAATAGAGCTAGAGACGTGGTTCTTTATGGGAAAAATAACTCATCGAAAATACTAAGTTATAGTTTGAAAACCAAGTTTATAAGACATTTATGATCCGAGATATAGCTCTTTGAAGTTTCGAAGAGACGCAGACAGTCAGAGTGTCTCGTTGTCTGCGTCTCTTCTATTCAAAACTTCAGATGAGCATATCTCGGCTCTCATTGGTTCCAGAGACATGATTTTTAGACCAAAATATAGCA</canonical>
            <polymorphic>GCTTAAAGGAGGTACTGTAGAAACTGAGCTCTAGTTTTATTGGGAAAATTGCTCCAAAAACCACTCGACTACCGTGAATGCTCTAAAAGCCTATCTGCGCGCTTAAAGCTCCATTATTTCGGTTCCTATACGAAAGATAAAAATGTGGTCAACTGATAAATAGTTTATCATAATATCACCAATATTTTATCAATTGACAAAATTTTGATATCTTTCATAGGAACCGAGATAGTTTAGCTTAAACTACTTGTCTGGCAAAATAACCCAAACTAACCGCTGTCAACTCATTGCTAACCACCGCCGTGTCGGATGGCTCATCAGTGACCTGACTCCGATGCTCATAGTTATCCCGTCGACGACGTGTCTCCTCAATAACCGATTGCTCAGTGATGGCGTCCGTGTTGCCGCTGAAAGAAGCAGCATTCAACATTGGGGAACAAGAATGATTGGGTGGTGGAAAAGAAGTTTTTTTTATTTAAGGGAACGGAAATTGGACAATKTCTTTTCTTCTGTGTTATTGTGTATGGTTGGAAAATGAGTCATGACATTGGAAATACAAAGAAAACAATTGAAAATGCGCTCTATTGGTAATAATAAAATTTTTTGAGATTATATAGGATTCAAAATCCTATATTTCAGTATAAAACCAAGTTTCCAGGACCATTACGAGCTGAGTTACGATCATTTGAAGTTTTGGGTGGAGAGACGCAGACAACGAGACACTCTAACTGGCTGCGTCTGTCCTCTATATCTCAGCTGTGAATAGAGCTAGAGACGTGGTTCTTTATGGGAAAAATAACTCATCGAAAATACTAAGTTATAGTTTGAAAACCAAGTTTATAAGACATTTATGATCCGAGATATAGCTCTTTGAAGTTTCGAAGAGACGCAGACAGTCAGAGTGTCTCGTTGTCTGCGTCTCTTCTATTCAAAACTTCAGATGAGCATATCTCGGCTCTCATTGGTTCCAGAGACATGATTTTTAGACCAAAATATAGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>403 288 145 70 46 31 9 8</canonical_bands>
                <polymorphic_bands>403 288 145 78 46 31 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTCCGATGCTCATAGTTATC</pcr_primer_p1>
		<pcr_primer_p2>CGCATTTTCAATTGTTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GACTCCGATGCTCATAGTTATCCCGTCGACGACGTGTCTCCTCAATAACCGATTGCTCAGTGATGGCGTCCGTGTTGCCGCTGAAAGAAGCAGCATTCAACATTGGGGAACAAGAATGATTGGGTGGTGGAAAAGAAGTTTTTTTTATTTAAGGGAACGGAAATTGGACAATTTCTTTTCTTCTGTGTTATTGTGTATGGTTGGAAAATGAGTCATGACATTGGAAATACAAAGAAAACAATTGAAAATGCG</canonical_amplicon>
		<polymorphic_amplicon>GACTCCGATGCTCATAGTTATCCCGTCGACGACGTGTCTCCTCAATAACCGATTGCTCAGTGATGGCGTCCGTGTTGCCGCTGAAAGAAGCAGCATTCAACATTGGGGAACAAGAATGATTGGGTGGTGGAAAAGAAGTTTTTTTTATTTAAGGGAACGGAAATTGGACAATKTCTTTTCTTCTGTGTTATTGTGTATGGTTGGAAAATGAGTCATGACATTGGAAATACAAAGAAAACAATTGAAAATGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35498</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>186808</contig_pos>
        <strand>+</strand>
        <context>ATTGGAAATA[C/T]AAAGAAAACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTCTGTGTTATTGTGTATGGTTGGAAAATGAGTCATGACATTGGAAATA</left_flank>
        <right_flank>AAAGAAAACAATTGAAAATGCGCTCTATTGGTAATAATAAAATTTTTTGA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACCACTCGACTACCGTGAATGCTCTAAAAGCCTATCTGCGCGCTTAAAGCTCCATTATTTCGGTTCCTATACGAAAGATAAAAATGTGGTCAACTGATAAATAGTTTATCATAATATCACCAATATTTTATCAATTGACAAAATTTTGATATCTTTCATAGGAACCGAGATAGTTTAGCTTAAACTACTTGTCTGGCAAAATAACCCAAACTAACCGCTGTCAACTCATTGCTAACCACCGCCGTGTCGGATGGCTCATCAGTGACCTGACTCCGATGCTCATAGTTATCCCGTCGACGACGTGTCTCCTCAATAACCGATTGCTCAGTGATGGCGTCCGTGTTGCCGCTGAAAGAAGCAGCATTCAACATTGGGGAACAAGAATGATTGGGTGGTGGAAAAGAAGTTTTTTTTATTTAAGGGAACGGAAATTGGACAATTTCTTTTCTTCTGTGTTATTGTGTATGGTTGGAAAATGAGTCATGACATTGGAAATACAAAGAAAACAATTGAAAATGCGCTCTATTGGTAATAATAAAATTTTTTGAGATTATATAGGATTCAAAATCCTATATTTCAGTATAAAACCAAGTTTCCAGGACCATTACGAGCTGAGTTACGATCATTTGAAGTTTTGGGTGGAGAGACGCAGACAACGAGACACTCTAACTGGCTGCGTCTGTCCTCTATATCTCAGCTGTGAATAGAGCTAGAGACGTGGTTCTTTATGGGAAAAATAACTCATCGAAAATACTAAGTTATAGTTTGAAAACCAAGTTTATAAGACATTTATGATCCGAGATATAGCTCTTTGAAGTTTCGAAGAGACGCAGACAGTCAGAGTGTCTCGTTGTCTGCGTCTCTTCTATTCAAAACTTCAGATGAGCATATCTCGGCTCTCATTGGTTCCAGAGACATGATTTTTAGACCAAAATATAGCATTTTTGATGAACTATCATTTCCAAAAAGAAACAAGTTTCTAGCTTTATTAGCAGCTG</canonical>
            <polymorphic>AAACCACTCGACTACCGTGAATGCTCTAAAAGCCTATCTGCGCGCTTAAAGCTCCATTATTTCGGTTCCTATACGAAAGATAAAAATGTGGTCAACTGATAAATAGTTTATCATAATATCACCAATATTTTATCAATTGACAAAATTTTGATATCTTTCATAGGAACCGAGATAGTTTAGCTTAAACTACTTGTCTGGCAAAATAACCCAAACTAACCGCTGTCAACTCATTGCTAACCACCGCCGTGTCGGATGGCTCATCAGTGACCTGACTCCGATGCTCATAGTTATCCCGTCGACGACGTGTCTCCTCAATAACCGATTGCTCAGTGATGGCGTCCGTGTTGCCGCTGAAAGAAGCAGCATTCAACATTGGGGAACAAGAATGATTGGGTGGTGGAAAAGAAGTTTTTTTTATTTAAGGGAACGGAAATTGGACAATTTCTTTTCTTCTGTGTTATTGTGTATGGTTGGAAAATGAGTCATGACATTGGAAATAYAAAGAAAACAATTGAAAATGCGCTCTATTGGTAATAATAAAATTTTTTGAGATTATATAGGATTCAAAATCCTATATTTCAGTATAAAACCAAGTTTCCAGGACCATTACGAGCTGAGTTACGATCATTTGAAGTTTTGGGTGGAGAGACGCAGACAACGAGACACTCTAACTGGCTGCGTCTGTCCTCTATATCTCAGCTGTGAATAGAGCTAGAGACGTGGTTCTTTATGGGAAAAATAACTCATCGAAAATACTAAGTTATAGTTTGAAAACCAAGTTTATAAGACATTTATGATCCGAGATATAGCTCTTTGAAGTTTCGAAGAGACGCAGACAGTCAGAGTGTCTCGTTGTCTGCGTCTCTTCTATTCAAAACTTCAGATGAGCATATCTCGGCTCTCATTGGTTCCAGAGACATGATTTTTAGACCAAAATATAGCATTTTTGATGAACTATCATTTCCAAAAAGAAACAAGTTTCTAGCTTTATTAGCAGCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTCTGTGTTATTGTGTATGG</pcr_primer_p1>
		<pcr_primer_p2>TTCACAGCTGAGATATAGAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>TTCTTCTGTGTTATTGTGTATGGTTGGAAAATGAGTCATGACATTGGAAATACAAAGAAAACAATTGAAAATGCGCTCTATTGGTAATAATAAAATTTTTTGAGATTATATAGGATTCAAAATCCTATATTTCAGTATAAAACCAAGTTTCCAGGACCATTACGAGCTGAGTTACGATCATTTGAAGTTTTGGGTGGAGAGACGCAGACAACGAGACACTCTAACTGGCTGCGTCTGTCCTCTATATCTCAGCTGTGAA</canonical_amplicon>
		<polymorphic_amplicon>TTCTTCTGTGTTATTGTGTATGGTTGGAAAATGAGTCATGACATTGGAAATAYAAAGAAAACAATTGAAAATGCGCTCTATTGGTAATAATAAAATTTTTTGAGATTATATAGGATTCAAAATCCTATATTTCAGTATAAAACCAAGTTTCCAGGACCATTACGAGCTGAGTTACGATCATTTGAAGTTTTGGGTGGAGAGACGCAGACAACGAGACACTCTAACTGGCTGCGTCTGTCCTCTATATCTCAGCTGTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35499</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>266996</contig_pos>
        <strand>+</strand>
        <context>ATTCTCTACA[G/T]TAACAGCTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTAATCTAATCCTGAGCTACAGTAGTCCCAAACTACCGTAATTCTCTACA</left_flank>
        <right_flank>TAACAGCTTCATCTTTTAAAGTACAGTAATAATTAACTACAGTGATCCTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGAAATTCTATTATCTTTCGCTACAGTATCCCAAACTATAGAGTTCTCCTTACTTTCAAAGCACCTCATCTACAGTAATCAATTGTCAATTTCAAATTACAGTAATCGTTATCTACAGTGATTCGTCATCGCTGTGAGATACCGTAATCCCAAGCTACAGTAACATTTTTTTCTGTTTCAGCTACAGTAATACCAAACTGAATTAATTGCTCATCTTTTTCAAAGTACAGGAATCCTCTTTTATAGAAATCCTCGAACTAAAGTAACCTGAAGCTACAGTAATCCTTATCTGTGATCATTTTTCATTGGTACAGTAGTTTTGGAATTTGGAGGATCCTGAGAGATTAAGAGTAGTTCTGGATCATTGAAATTCCATTATGTTCGGCTACAGTAATCCCAAACGATAGATGTCTCTCCTTACTTCCAAAGTACAGTACCTCATCTACAGTAATCTAATCCTGAGCTACAGTAGTCCCAAACTACCGTAATTCTCTACATTAACAGCTTCATCTTTTAAAGTACAGTAATAATTAACTACAGTGATCCTCATCCCCAGTAATCTCTTATCCGTTTCAGCTGCAGTAATCCCCATATCAAATTGGCTACAGTAACCTCTACAGTAATCACAGATTTACTCCTGATACAGTAACCGGTAACTACGGTAACCTCTTCGCCGTTTGAAGTTACAGTAGTCAAAGCTACAGTTATTTATCATTGCTCCAAGATTAAGTGTTCCCAAATTGCAGTAATTCTCCACTACAGTAATCTGAAGCTACAGTAATCCTGAACTACAGTAACGCATAAACAGATAACTTTTTTATGTTAAACTCACAGTGAACTGGCTACAGTACAGATTCACTCCTTCTACAGTAGCCTACAGTAGCCTTACACTACGATTTTTACAAGTGATTCGTGATCCCTGTGAGATACCGTAATCCCAAGCTACAGTAACCTTTTCTCTGCTTCAACTAAAGTAATCCCAAGCTGAAGTTATTTCT</canonical>
            <polymorphic>ATTGAAATTCTATTATCTTTCGCTACAGTATCCCAAACTATAGAGTTCTCCTTACTTTCAAAGCACCTCATCTACAGTAATCAATTGTCAATTTCAAATTACAGTAATCGTTATCTACAGTGATTCGTCATCGCTGTGAGATACCGTAATCCCAAGCTACAGTAACATTTTTTTCTGTTTCAGCTACAGTAATACCAAACTGAATTAATTGCTCATCTTTTTCAAAGTACAGGAATCCTCTTTTATAGAAATCCTCGAACTAAAGTAACCTGAAGCTACAGTAATCCTTATCTGTGATCATTTTTCATTGGTACAGTAGTTTTGGAATTTGGAGGATCCTGAGAGATTAAGAGTAGTTCTGGATCATTGAAATTCCATTATGTTCGGCTACAGTAATCCCAAACGATAGATGTCTCTCCTTACTTCCAAAGTACAGTACCTCATCTACAGTAATCTAATCCTGAGCTACAGTAGTCCCAAACTACCGTAATTCTCTACAKTAACAGCTTCATCTTTTAAAGTACAGTAATAATTAACTACAGTGATCCTCATCCCCAGTAATCTCTTATCCGTTTCAGCTGCAGTAATCCCCATATCAAATTGGCTACAGTAACCTCTACAGTAATCACAGATTTACTCCTGATACAGTAACCGGTAACTACGGTAACCTCTTCGCCGTTTGAAGTTACAGTAGTCAAAGCTACAGTTATTTATCATTGCTCCAAGATTAAGTGTTCCCAAATTGCAGTAATTCTCCACTACAGTAATCTGAAGCTACAGTAATCCTGAACTACAGTAACGCATAAACAGATAACTTTTTTATGTTAAACTCACAGTGAACTGGCTACAGTACAGATTCACTCCTTCTACAGTAGCCTACAGTAGCCTTACACTACGATTTTTACAAGTGATTCGTGATCCCTGTGAGATACCGTAATCCCAAGCTACAGTAACCTTTTCTCTGCTTCAACTAAAGTAATCCCAAGCTGAAGTTATTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>205 195 175 153 142 97 17 16</canonical_bands>
                <polymorphic_bands>205 195 175 169 142 97 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGATCCTGAGAGATTAAGAGT</pcr_primer_p1>
		<pcr_primer_p2>CTGAAACGGATAAGAGATTACTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAGGATCCTGAGAGATTAAGAGTAGTTCTGGATCATTGAAATTCCATTATGTTCGGCTACAGTAATCCCAAACGATAGATGTCTCTCCTTACTTCCAAAGTACAGTACCTCATCTACAGTAATCTAATCCTGAGCTACAGTAGTCCCAAACTACCGTAATTCTCTACATTAACAGCTTCATCTTTTAAAGTACAGTAATAATTAACTACAGTGATCCTCATCCCCAGTAATCTCTTATCCGTTTCAG</canonical_amplicon>
		<polymorphic_amplicon>GAGGATCCTGAGAGATTAAGAGTAGTTCTGGATCATTGAAATTCCATTATGTTCGGCTACAGTAATCCCAAACGATAGATGTCTCTCCTTACTTCCAAAGTACAGTACCTCATCTACAGTAATCTAATCCTGAGCTACAGTAGTCCCAAACTACCGTAATTCTCTACAKTAACAGCTTCATCTTTTAAAGTACAGTAATAATTAACTACAGTGATCCTCATCCCCAGTAATCTCTTATCCGTTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35500</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>272525</contig_pos>
        <strand></strand>
        <context>aaaaattgag[A/C]atttaaaatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAATTGGAAAATCTGAAATTCAGGAATTCCAAAGATTGAAAAAATTGAG</left_flank>
        <right_flank>ATTTAAAATTTGAAAATTCCAAAAATTCAAAATTCTGAAATTTCAAAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACTTTAAAAAATTTATTTTGAGAATTATTGAACATTTTTCTGGTGGCCAAACTTCAATTCCCGAAAAAGTGAAGCCAATATCGAAAAACCAAAATGGGAAATTCCAAAAATTCTAAAATTGGAAAATTCCGGAAATCAAAAAATTGAAACATTTGAAATCTTCAAAATTCCAGAAAAAGAAAATTCTAGAATTACGAAAGTAGAAAATTCCGTAATTTAAAAATTTGGGAAAATTAAAAATCGGAAAATTCCAGAATTCCGAAAATCCCAAAAATTCAGAATTCCGAAAAATCAGTTTTTGTAAATTCAGAAATTCCATAAATTCAAGTTTTCAAAATTCCGAAATTCCAAAAATCCTAAATTTCAGAATCCTGAAAATTGAAAATCAGGATAATCAGGAATTCCAGAAACTCAACATTGGGAAACTCCGGAATTCCGGAAATCAAAAAAATTGGAAAATCTGAAATTCAGGAATTCCAAAGATTGAAAAAATTGAGAATTTAAAATTTGAAAATTCCAAAAATTCAAAATTCTGAAATTTCAAAAATGTTGAAAAGGTGAAAGTTCCGAACGTCTGAAAATCGAAAATCTCGAAAATTTCCAATTTCAAAATTCTTGAAAGTTTCAAAGTTCCGAAAATTCAAATTTCGAAAATTTAAAATTTTCAAAAATTCCGAATTTTCTAAAATCTCAAACTTCTTCAAACCCTTCAAAAGACAGTACCATCTTCCAATTCCAATGTCAAAACCGTGAGAAAAAAGTCGGCAGCCAGTGTGGCAGTCCGTATATCGACACTATCGATCGCAACCTCGGCGAACCGTTTCGCAGCTCGATTCGTAATTTCCCAAGTGGCCATTCCACGTACGCACTGCCAGAATTCAGCAGTCTCGTTCATATGATTCACATATCCTTCTCGTTTCTCATCAATGTCTTCTAGATCGTTTGCCATTCGAATCAGGACTCGTTCGATTGCGATTTCGATGGTTTTCGAATCCTGA</canonical>
            <polymorphic>TAACTTTAAAAAATTTATTTTGAGAATTATTGAACATTTTTCTGGTGGCCAAACTTCAATTCCCGAAAAAGTGAAGCCAATATCGAAAAACCAAAATGGGAAATTCCAAAAATTCTAAAATTGGAAAATTCCGGAAATCAAAAAATTGAAACATTTGAAATCTTCAAAATTCCAGAAAAAGAAAATTCTAGAATTACGAAAGTAGAAAATTCCGTAATTTAAAAATTTGGGAAAATTAAAAATCGGAAAATTCCAGAATTCCGAAAATCCCAAAAATTCAGAATTCCGAAAAATCAGTTTTTGTAAATTCAGAAATTCCATAAATTCAAGTTTTCAAAATTCCGAAATTCCAAAAATCCTAAATTTCAGAATCCTGAAAATTGAAAATCAGGATAATCAGGAATTCCAGAAACTCAACATTGGGAAACTCCGGAATTCCGGAAATCAAAAAAATTGGAAAATCTGAAATTCAGGAATTCCAAAGATTGAAAAAATTGAGMATTTAAAATTTGAAAATTCCAAAAATTCAAAATTCTGAAATTTCAAAAATGTTGAAAAGGTGAAAGTTCCGAACGTCTGAAAATCGAAAATCTCGAAAATTTCCAATTTCAAAATTCTTGAAAGTTTCAAAGTTCCGAAAATTCAAATTTCGAAAATTTAAAATTTTCAAAAATTCCGAATTTTCTAAAATCTCAAACTTCTTCAAACCCTTCAAAAGACAGTACCATCTTCCAATTCCAATGTCAAAACCGTGAGAAAAAAGTCGGCAGCCAGTGTGGCAGTCCGTATATCGACACTATCGATCGCAACCTCGGCGAACCGTTTCGCAGCTCGATTCGTAATTTCCCAAGTGGCCATTCCACGTACGCACTGCCAGAATTCAGCAGTCTCGTTCATATGATTCACATATCCTTCTCGTTTCTCATCAATGTCTTCTAGATCGTTTGCCATTCGAATCAGGACTCGTTCGATTGCGATTTCGATGGTTTTCGAATCCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>199 123 90 59 41 40 33 32 27 25 25 24 24 18 16 16 16 16 15 15 11 10 9 9 9 9 8 8 8 8 8 8 7 7 7 7 7 6</canonical_bands>
                <polymorphic_bands>199 123 90 59 41 40 33 32 32 27 25 24 24 18 16 16 16 16 15 15 11 10 9 9 9 9 8 8 8 8 8 8 7 7 7 7 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>123 107 59 55 44 37 33 32 27 24 24 23 18 18 18 17 17 16 16 16 15 15 15 13 11 10 10 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7 7 7 7 7 6</canonical_bands>
                <polymorphic_bands>123 107 59 55 44 37 33 32 27 24 24 23 18 18 18 17 17 16 16 16 15 15 15 14 13 11 10 10 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7 7 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTCCGGAAATCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGGGTTTGAAGAAGTTTGAGA</pcr_primer_p2>
		<pcr_amplicon_size>587</pcr_amplicon_size>
		<canonical_amplicon>AAAATTCCGGAAATCAAAAAATTGAAACATTTGAAATCTTCAAAATTCCAGAAAAAGAAAATTCTAGAATTACGAAAGTAGAAAATTCCGTAATTTAAAAATTTGGGAAAATTAAAAATCGGAAAATTCCAGAATTCCGAAAATCCCAAAAATTCAGAATTCCGAAAAATCAGTTTTTGTAAATTCAGAAATTCCATAAATTCAAGTTTTCAAAATTCCGAAATTCCAAAAATCCTAAATTTCAGAATCCTGAAAATTGAAAATCAGGATAATCAGGAATTCCAGAAACTCAACATTGGGAAACTCCGGAATTCCGGAAATCAAAAAAATTGGAAAATCTGAAATTCAGGAATTCCAAAGATTGAAAAAATTGAGAATTTAAAATTTGAAAATTCCAAAAATTCAAAATTCTGAAATTTCAAAAATGTTGAAAAGGTGAAAGTTCCGAACGTCTGAAAATCGAAAATCTCGAAAATTTCCAATTTCAAAATTCTTGAAAGTTTCAAAGTTCCGAAAATTCAAATTTCGAAAATTTAAAATTTTCAAAAATTCCGAATTTTCTAAAATCTCAAACTTCTTCAAACCCT</canonical_amplicon>
		<polymorphic_amplicon>AAAATTCCGGAAATCAAAAAATTGAAACATTTGAAATCTTCAAAATTCCAGAAAAAGAAAATTCTAGAATTACGAAAGTAGAAAATTCCGTAATTTAAAAATTTGGGAAAATTAAAAATCGGAAAATTCCAGAATTCCGAAAATCCCAAAAATTCAGAATTCCGAAAAATCAGTTTTTGTAAATTCAGAAATTCCATAAATTCAAGTTTTCAAAATTCCGAAATTCCAAAAATCCTAAATTTCAGAATCCTGAAAATTGAAAATCAGGATAATCAGGAATTCCAGAAACTCAACATTGGGAAACTCCGGAATTCCGGAAATCAAAAAAATTGGAAAATCTGAAATTCAGGAATTCCAAAGATTGAAAAAATTGAGMATTTAAAATTTGAAAATTCCAAAAATTCAAAATTCTGAAATTTCAAAAATGTTGAAAAGGTGAAAGTTCCGAACGTCTGAAAATCGAAAATCTCGAAAATTTCCAATTTCAAAATTCTTGAAAGTTTCAAAGTTCCGAAAATTCAAATTTCGAAAATTTAAAATTTTCAAAAATTCCGAATTTTCTAAAATCTCAAACTTCTTCAAACCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35501</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>272643</contig_pos>
        <strand></strand>
        <context>ttcaaaattc[T/C]tgaaagtttc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCCGAACGTCTGAAAATCGAAAATCTCGAAAATTTCCAATTTCAAAATTC</left_flank>
        <right_flank>TGAAAGTTTCAAAGTTCCGAAAATTCAAATTTCGAAAATTTAAAATTTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGGAAAATTCCGGAAATCAAAAAATTGAAACATTTGAAATCTTCAAAATTCCAGAAAAAGAAAATTCTAGAATTACGAAAGTAGAAAATTCCGTAATTTAAAAATTTGGGAAAATTAAAAATCGGAAAATTCCAGAATTCCGAAAATCCCAAAAATTCAGAATTCCGAAAAATCAGTTTTTGTAAATTCAGAAATTCCATAAATTCAAGTTTTCAAAATTCCGAAATTCCAAAAATCCTAAATTTCAGAATCCTGAAAATTGAAAATCAGGATAATCAGGAATTCCAGAAACTCAACATTGGGAAACTCCGGAATTCCGGAAATCAAAAAAATTGGAAAATCTGAAATTCAGGAATTCCAAAGATTGAAAAAATTGAGAATTTAAAATTTGAAAATTCCAAAAATTCAAAATTCTGAAATTTCAAAAATGTTGAAAAGGTGAAAGTTCCGAACGTCTGAAAATCGAAAATCTCGAAAATTTCCAATTTCAAAATTCTTGAAAGTTTCAAAGTTCCGAAAATTCAAATTTCGAAAATTTAAAATTTTCAAAAATTCCGAATTTTCTAAAATCTCAAACTTCTTCAAACCCTTCAAAAGACAGTACCATCTTCCAATTCCAATGTCAAAACCGTGAGAAAAAAGTCGGCAGCCAGTGTGGCAGTCCGTATATCGACACTATCGATCGCAACCTCGGCGAACCGTTTCGCAGCTCGATTCGTAATTTCCCAAGTGGCCATTCCACGTACGCACTGCCAGAATTCAGCAGTCTCGTTCATATGATTCACATATCCTTCTCGTTTCTCATCAATGTCTTCTAGATCGTTTGCCATTCGAATCAGGACTCGTTCGATTGCGATTTCGATGGTTTTCGAATCCTGAAAATCAGGAAAAATTGGGGTTGAAATTGATGGGAGCATGTTTAAACCGGATCAAAATTTGGCTAGGAAAATTTTGAAAATGGCTAGAATCCGTTCAAAATCGACTACAACTGGCCGTA</canonical>
            <polymorphic>AATTGGAAAATTCCGGAAATCAAAAAATTGAAACATTTGAAATCTTCAAAATTCCAGAAAAAGAAAATTCTAGAATTACGAAAGTAGAAAATTCCGTAATTTAAAAATTTGGGAAAATTAAAAATCGGAAAATTCCAGAATTCCGAAAATCCCAAAAATTCAGAATTCCGAAAAATCAGTTTTTGTAAATTCAGAAATTCCATAAATTCAAGTTTTCAAAATTCCGAAATTCCAAAAATCCTAAATTTCAGAATCCTGAAAATTGAAAATCAGGATAATCAGGAATTCCAGAAACTCAACATTGGGAAACTCCGGAATTCCGGAAATCAAAAAAATTGGAAAATCTGAAATTCAGGAATTCCAAAGATTGAAAAAATTGAGAATTTAAAATTTGAAAATTCCAAAAATTCAAAATTCTGAAATTTCAAAAATGTTGAAAAGGTGAAAGTTCCGAACGTCTGAAAATCGAAAATCTCGAAAATTTCCAATTTCAAAATTCYTGAAAGTTTCAAAGTTCCGAAAATTCAAATTTCGAAAATTTAAAATTTTCAAAAATTCCGAATTTTCTAAAATCTCAAACTTCTTCAAACCCTTCAAAAGACAGTACCATCTTCCAATTCCAATGTCAAAACCGTGAGAAAAAAGTCGGCAGCCAGTGTGGCAGTCCGTATATCGACACTATCGATCGCAACCTCGGCGAACCGTTTCGCAGCTCGATTCGTAATTTCCCAAGTGGCCATTCCACGTACGCACTGCCAGAATTCAGCAGTCTCGTTCATATGATTCACATATCCTTCTCGTTTCTCATCAATGTCTTCTAGATCGTTTGCCATTCGAATCAGGACTCGTTCGATTGCGATTTCGATGGTTTTCGAATCCTGAAAATCAGGAAAAATTGGGGTTGAAATTGATGGGAGCATGTTTAAACCGGATCAAAATTTGGCTAGGAAAATTTTGAAAATGGCTAGAATCCGTTCAAAATCGACTACAACTGGCCGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTCCGGAAATCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGGGTTTGAAGAAGTTTGAGA</pcr_primer_p2>
		<pcr_amplicon_size>587</pcr_amplicon_size>
		<canonical_amplicon>AAAATTCCGGAAATCAAAAAATTGAAACATTTGAAATCTTCAAAATTCCAGAAAAAGAAAATTCTAGAATTACGAAAGTAGAAAATTCCGTAATTTAAAAATTTGGGAAAATTAAAAATCGGAAAATTCCAGAATTCCGAAAATCCCAAAAATTCAGAATTCCGAAAAATCAGTTTTTGTAAATTCAGAAATTCCATAAATTCAAGTTTTCAAAATTCCGAAATTCCAAAAATCCTAAATTTCAGAATCCTGAAAATTGAAAATCAGGATAATCAGGAATTCCAGAAACTCAACATTGGGAAACTCCGGAATTCCGGAAATCAAAAAAATTGGAAAATCTGAAATTCAGGAATTCCAAAGATTGAAAAAATTGAGAATTTAAAATTTGAAAATTCCAAAAATTCAAAATTCTGAAATTTCAAAAATGTTGAAAAGGTGAAAGTTCCGAACGTCTGAAAATCGAAAATCTCGAAAATTTCCAATTTCAAAATTCTTGAAAGTTTCAAAGTTCCGAAAATTCAAATTTCGAAAATTTAAAATTTTCAAAAATTCCGAATTTTCTAAAATCTCAAACTTCTTCAAACCCT</canonical_amplicon>
		<polymorphic_amplicon>AAAATTCCGGAAATCAAAAAATTGAAACATTTGAAATCTTCAAAATTCCAGAAAAAGAAAATTCTAGAATTACGAAAGTAGAAAATTCCGTAATTTAAAAATTTGGGAAAATTAAAAATCGGAAAATTCCAGAATTCCGAAAATCCCAAAAATTCAGAATTCCGAAAAATCAGTTTTTGTAAATTCAGAAATTCCATAAATTCAAGTTTTCAAAATTCCGAAATTCCAAAAATCCTAAATTTCAGAATCCTGAAAATTGAAAATCAGGATAATCAGGAATTCCAGAAACTCAACATTGGGAAACTCCGGAATTCCGGAAATCAAAAAAATTGGAAAATCTGAAATTCAGGAATTCCAAAGATTGAAAAAATTGAGAATTTAAAATTTGAAAATTCCAAAAATTCAAAATTCTGAAATTTCAAAAATGTTGAAAAGGTGAAAGTTCCGAACGTCTGAAAATCGAAAATCTCGAAAATTTCCAATTTCAAAATTCYTGAAAGTTTCAAAGTTCCGAAAATTCAAATTTCGAAAATTTAAAATTTTCAAAAATTCCGAATTTTCTAAAATCTCAAACTTCTTCAAACCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35502</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>272737</contig_pos>
        <strand>+</strand>
        <context>TTCAAACCCT[C/T]CAAAAKACAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTTCAAAAATTCCGAATTTTCTAAAATCTCAAACTTCTTCAAACCCT</left_flank>
        <right_flank>CAAAAGACAGTACCATCTTCCAATTCCAATGTCAAAACCGTGAGAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTAATTTAAAAATTTGGGAAAATTAAAAATCGGAAAATTCCAGAATTCCGAAAATCCCAAAAATTCAGAATTCCGAAAAATCAGTTTTTGTAAATTCAGAAATTCCATAAATTCAAGTTTTCAAAATTCCGAAATTCCAAAAATCCTAAATTTCAGAATCCTGAAAATTGAAAATCAGGATAATCAGGAATTCCAGAAACTCAACATTGGGAAACTCCGGAATTCCGGAAATCAAAAAAATTGGAAAATCTGAAATTCAGGAATTCCAAAGATTGAAAAAATTGAGAATTTAAAATTTGAAAATTCCAAAAATTCAAAATTCTGAAATTTCAAAAATGTTGAAAAGGTGAAAGTTCCGAACGTCTGAAAATCGAAAATCTCGAAAATTTCCAATTTCAAAATTCTTGAAAGTTTCAAAGTTCCGAAAATTCAAATTTCGAAAATTTAAAATTTTCAAAAATTCCGAATTTTCTAAAATCTCAAACTTCTTCAAACCCTTCAAAAGACAGTACCATCTTCCAATTCCAATGTCAAAACCGTGAGAAAAAAGTCGGCAGCCAGTGTGGCAGTCCGTATATCGACACTATCGATCGCAACCTCGGCGAACCGTTTCGCAGCTCGATTCGTAATTTCCCAAGTGGCCATTCCACGTACGCACTGCCAGAATTCAGCAGTCTCGTTCATATGATTCACATATCCTTCTCGTTTCTCATCAATGTCTTCTAGATCGTTTGCCATTCGAATCAGGACTCGTTCGATTGCGATTTCGATGGTTTTCGAATCCTGAAAATCAGGAAAAATTGGGGTTGAAATTGATGGGAGCATGTTTAAACCGGATCAAAATTTGGCTAGGAAAATTTTGAAAATGGCTAGAATCCGTTCAAAATCGACTACAACTGGCCGTATTCTGACTTTAAAAAGGCTTGAAATGCTCATAAATTAGTATTAAACTCCAAAATTCTGTCCATACTTTGATTCTGTCTATGATGAACATAATGG</canonical>
            <polymorphic>CGTAATTTAAAAATTTGGGAAAATTAAAAATCGGAAAATTCCAGAATTCCGAAAATCCCAAAAATTCAGAATTCCGAAAAATCAGTTTTTGTAAATTCAGAAATTCCATAAATTCAAGTTTTCAAAATTCCGAAATTCCAAAAATCCTAAATTTCAGAATCCTGAAAATTGAAAATCAGGATAATCAGGAATTCCAGAAACTCAACATTGGGAAACTCCGGAATTCCGGAAATCAAAAAAATTGGAAAATCTGAAATTCAGGAATTCCAAAGATTGAAAAAATTGAGAATTTAAAATTTGAAAATTCCAAAAATTCAAAATTCTGAAATTTCAAAAATGTTGAAAAGGTGAAAGTTCCGAACGTCTGAAAATCGAAAATCTCGAAAATTTCCAATTTCAAAATTCTTGAAAGTTTCAAAGTTCCGAAAATTCAAATTTCGAAAATTTAAAATTTTCAAAAATTCCGAATTTTCTAAAATCTCAAACTTCTTCAAACCCTYCAAAAGACAGTACCATCTTCCAATTCCAATGTCAAAACCGTGAGAAAAAAGTCGGCAGCCAGTGTGGCAGTCCGTATATCGACACTATCGATCGCAACCTCGGCGAACCGTTTCGCAGCTCGATTCGTAATTTCCCAAGTGGCCATTCCACGTACGCACTGCCAGAATTCAGCAGTCTCGTTCATATGATTCACATATCCTTCTCGTTTCTCATCAATGTCTTCTAGATCGTTTGCCATTCGAATCAGGACTCGTTCGATTGCGATTTCGATGGTTTTCGAATCCTGAAAATCAGGAAAAATTGGGGTTGAAATTGATGGGAGCATGTTTAAACCGGATCAAAATTTGGCTAGGAAAATTTTGAAAATGGCTAGAATCCGTTCAAAATCGACTACAACTGGCCGTATTCTGACTTTAAAAAGGCTTGAAATGCTCATAAATTAGTATTAAACTCCAAAATTCTGTCCATACTTTGATTCTGTCTATGATGAACATAATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCTTCAAAATTCCAGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>ATATACGGACTGCCACACTG</pcr_primer_p2>
		<pcr_amplicon_size>633</pcr_amplicon_size>
		<canonical_amplicon>TTCAAAAGACAGTACCATCTTCCAATTCCAATGTCAAAACCGTGAGAAAAAAGTCGGCAGCCAGTGTGGCAGTCCGTATAT</canonical_amplicon>
		<polymorphic_amplicon>TYCAAAAGACAGTACCATCTTCCAATTCCAATGTCAAAACCGTGAGAAAAAAGTCGGCAGCCAGTGTGGCAGTCCGTATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35503</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>272743</contig_pos>
        <strand>+</strand>
        <context>CCCTYCAAAA[G/T]ACAGTACCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAAAAATTCCGAATTTTCTAAAATCTCAAACTTCTTCAAACCCTTCAAAA</left_flank>
        <right_flank>ACAGTACCATCTTCCAATTCCAATGTCAAAACCGTGAGAAAAAAGTCGGC</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAAATTTGGGAAAATTAAAAATCGGAAAATTCCAGAATTCCGAAAATCCCAAAAATTCAGAATTCCGAAAAATCAGTTTTTGTAAATTCAGAAATTCCATAAATTCAAGTTTTCAAAATTCCGAAATTCCAAAAATCCTAAATTTCAGAATCCTGAAAATTGAAAATCAGGATAATCAGGAATTCCAGAAACTCAACATTGGGAAACTCCGGAATTCCGGAAATCAAAAAAATTGGAAAATCTGAAATTCAGGAATTCCAAAGATTGAAAAAATTGAGAATTTAAAATTTGAAAATTCCAAAAATTCAAAATTCTGAAATTTCAAAAATGTTGAAAAGGTGAAAGTTCCGAACGTCTGAAAATCGAAAATCTCGAAAATTTCCAATTTCAAAATTCTTGAAAGTTTCAAAGTTCCGAAAATTCAAATTTCGAAAATTTAAAATTTTCAAAAATTCCGAATTTTCTAAAATCTCAAACTTCTTCAAACCCTTCAAAAGACAGTACCATCTTCCAATTCCAATGTCAAAACCGTGAGAAAAAAGTCGGCAGCCAGTGTGGCAGTCCGTATATCGACACTATCGATCGCAACCTCGGCGAACCGTTTCGCAGCTCGATTCGTAATTTCCCAAGTGGCCATTCCACGTACGCACTGCCAGAATTCAGCAGTCTCGTTCATATGATTCACATATCCTTCTCGTTTCTCATCAATGTCTTCTAGATCGTTTGCCATTCGAATCAGGACTCGTTCGATTGCGATTTCGATGGTTTTCGAATCCTGAAAATCAGGAAAAATTGGGGTTGAAATTGATGGGAGCATGTTTAAACCGGATCAAAATTTGGCTAGGAAAATTTTGAAAATGGCTAGAATCCGTTCAAAATCGACTACAACTGGCCGTATTCTGACTTTAAAAAGGCTTGAAATGCTCATAAATTAGTATTAAACTCCAAAATTCTGTCCATACTTTGATTCTGTCTATGATGAACATAATGGAGACGA</canonical>
            <polymorphic>TTAAAAATTTGGGAAAATTAAAAATCGGAAAATTCCAGAATTCCGAAAATCCCAAAAATTCAGAATTCCGAAAAATCAGTTTTTGTAAATTCAGAAATTCCATAAATTCAAGTTTTCAAAATTCCGAAATTCCAAAAATCCTAAATTTCAGAATCCTGAAAATTGAAAATCAGGATAATCAGGAATTCCAGAAACTCAACATTGGGAAACTCCGGAATTCCGGAAATCAAAAAAATTGGAAAATCTGAAATTCAGGAATTCCAAAGATTGAAAAAATTGAGAATTTAAAATTTGAAAATTCCAAAAATTCAAAATTCTGAAATTTCAAAAATGTTGAAAAGGTGAAAGTTCCGAACGTCTGAAAATCGAAAATCTCGAAAATTTCCAATTTCAAAATTCTTGAAAGTTTCAAAGTTCCGAAAATTCAAATTTCGAAAATTTAAAATTTTCAAAAATTCCGAATTTTCTAAAATCTCAAACTTCTTCAAACCCTTCAAAAKACAGTACCATCTTCCAATTCCAATGTCAAAACCGTGAGAAAAAAGTCGGCAGCCAGTGTGGCAGTCCGTATATCGACACTATCGATCGCAACCTCGGCGAACCGTTTCGCAGCTCGATTCGTAATTTCCCAAGTGGCCATTCCACGTACGCACTGCCAGAATTCAGCAGTCTCGTTCATATGATTCACATATCCTTCTCGTTTCTCATCAATGTCTTCTAGATCGTTTGCCATTCGAATCAGGACTCGTTCGATTGCGATTTCGATGGTTTTCGAATCCTGAAAATCAGGAAAAATTGGGGTTGAAATTGATGGGAGCATGTTTAAACCGGATCAAAATTTGGCTAGGAAAATTTTGAAAATGGCTAGAATCCGTTCAAAATCGACTACAACTGGCCGTATTCTGACTTTAAAAAGGCTTGAAATGCTCATAAATTAGTATTAAACTCCAAAATTCTGTCCATACTTTGATTCTGTCTATGATGAACATAATGGAGACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCTTCAAAATTCCAGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>ATATACGGACTGCCACACTG</pcr_primer_p2>
		<pcr_amplicon_size>633</pcr_amplicon_size>
		<canonical_amplicon>AGACAGTACCATCTTCCAATTCCAATGTCAAAACCGTGAGAAAAAAGTCGGCAGCCAGTGTGGCAGTCCGTATAT</canonical_amplicon>
		<polymorphic_amplicon>AKACAGTACCATCTTCCAATTCCAATGTCAAAACCGTGAGAAAAAAGTCGGCAGCCAGTGTGGCAGTCCGTATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35504</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>272775</contig_pos>
        <strand>+</strand>
        <context>AATGTCAAAA[C/T]CGTGAGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTCAAACCCTTCAAAAGACAGTACCATCTTCCAATTCCAATGTCAAAA</left_flank>
        <right_flank>CGTGAGAAAAAAGTCGGCAGCCAGTGTGGCAGTCCGTATATCGACACTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCAGAATTCCGAAAATCCCAAAAATTCAGAATTCCGAAAAATCAGTTTTTGTAAATTCAGAAATTCCATAAATTCAAGTTTTCAAAATTCCGAAATTCCAAAAATCCTAAATTTCAGAATCCTGAAAATTGAAAATCAGGATAATCAGGAATTCCAGAAACTCAACATTGGGAAACTCCGGAATTCCGGAAATCAAAAAAATTGGAAAATCTGAAATTCAGGAATTCCAAAGATTGAAAAAATTGAGAATTTAAAATTTGAAAATTCCAAAAATTCAAAATTCTGAAATTTCAAAAATGTTGAAAAGGTGAAAGTTCCGAACGTCTGAAAATCGAAAATCTCGAAAATTTCCAATTTCAAAATTCTTGAAAGTTTCAAAGTTCCGAAAATTCAAATTTCGAAAATTTAAAATTTTCAAAAATTCCGAATTTTCTAAAATCTCAAACTTCTTCAAACCCTTCAAAAGACAGTACCATCTTCCAATTCCAATGTCAAAACCGTGAGAAAAAAGTCGGCAGCCAGTGTGGCAGTCCGTATATCGACACTATCGATCGCAACCTCGGCGAACCGTTTCGCAGCTCGATTCGTAATTTCCCAAGTGGCCATTCCACGTACGCACTGCCAGAATTCAGCAGTCTCGTTCATATGATTCACATATCCTTCTCGTTTCTCATCAATGTCTTCTAGATCGTTTGCCATTCGAATCAGGACTCGTTCGATTGCGATTTCGATGGTTTTCGAATCCTGAAAATCAGGAAAAATTGGGGTTGAAATTGATGGGAGCATGTTTAAACCGGATCAAAATTTGGCTAGGAAAATTTTGAAAATGGCTAGAATCCGTTCAAAATCGACTACAACTGGCCGTATTCTGACTTTAAAAAGGCTTGAAATGCTCATAAATTAGTATTAAACTCCAAAATTCTGTCCATACTTTGATTCTGTCTATGATGAACATAATGGAGACGATTGCTGGTGCATTGATGACACAATCAACGATG</canonical>
            <polymorphic>TTCCAGAATTCCGAAAATCCCAAAAATTCAGAATTCCGAAAAATCAGTTTTTGTAAATTCAGAAATTCCATAAATTCAAGTTTTCAAAATTCCGAAATTCCAAAAATCCTAAATTTCAGAATCCTGAAAATTGAAAATCAGGATAATCAGGAATTCCAGAAACTCAACATTGGGAAACTCCGGAATTCCGGAAATCAAAAAAATTGGAAAATCTGAAATTCAGGAATTCCAAAGATTGAAAAAATTGAGAATTTAAAATTTGAAAATTCCAAAAATTCAAAATTCTGAAATTTCAAAAATGTTGAAAAGGTGAAAGTTCCGAACGTCTGAAAATCGAAAATCTCGAAAATTTCCAATTTCAAAATTCTTGAAAGTTTCAAAGTTCCGAAAATTCAAATTTCGAAAATTTAAAATTTTCAAAAATTCCGAATTTTCTAAAATCTCAAACTTCTTCAAACCCTTCAAAAGACAGTACCATCTTCCAATTCCAATGTCAAAAYCGTGAGAAAAAAGTCGGCAGCCAGTGTGGCAGTCCGTATATCGACACTATCGATCGCAACCTCGGCGAACCGTTTCGCAGCTCGATTCGTAATTTCCCAAGTGGCCATTCCACGTACGCACTGCCAGAATTCAGCAGTCTCGTTCATATGATTCACATATCCTTCTCGTTTCTCATCAATGTCTTCTAGATCGTTTGCCATTCGAATCAGGACTCGTTCGATTGCGATTTCGATGGTTTTCGAATCCTGAAAATCAGGAAAAATTGGGGTTGAAATTGATGGGAGCATGTTTAAACCGGATCAAAATTTGGCTAGGAAAATTTTGAAAATGGCTAGAATCCGTTCAAAATCGACTACAACTGGCCGTATTCTGACTTTAAAAAGGCTTGAAATGCTCATAAATTAGTATTAAACTCCAAAATTCTGTCCATACTTTGATTCTGTCTATGATGAACATAATGGAGACGATTGCTGGTGCATTGATGACACAATCAACGATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>471 429 70 30</canonical_bands>
                <polymorphic_bands>471 429 100</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCTTCAAAATTCCAGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CACTTGGGAAATTACGAATC</pcr_primer_p2>
		<pcr_amplicon_size>695</pcr_amplicon_size>
		<canonical_amplicon>ACCGTGAGAAAAAAGTCGGCAGCCAGTGTGGCAGTCCGTATATCGACACTATCGATCGCAACCTCGGCGAACCGTTTCGCAGCTCGATTCGTAATTTCCCAAGTG</canonical_amplicon>
		<polymorphic_amplicon>AYCGTGAGAAAAAAGTCGGCAGCCAGTGTGGCAGTCCGTATATCGACACTATCGATCGCAACCTCGGCGAACCGTTTCGCAGCTCGATTCGTAATTTCCCAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35505</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>276784</contig_pos>
        <strand>+</strand>
        <context>GAATTGTTTC[G/T]TTTTTTTTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAGATCTCGTGCACCCATTCCTTGAAGACTTTTTCTATTTGAATTGTTTC</left_flank>
        <right_flank>TTTTTTTTGGATTTTATCTGAAAAAAATCGGAATATTGCGAAAAATTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATGAGACAAATCAATGGTTATCATCATATCAGACCATAGGGGTTCAATGCCTCCTTCGATGATTGCTGTGAGGATGGGAATCCAAACTTCTGGAGCAAAAGTCACTGGTGGCAGCTTGACTAGCTGTTTGATGAGCAATCGCATCGCTTCGCAGATGACGTCAACGTCGGTGTGGTGATCTGAGAAGTGATTTTGAGATGAAAAATCACAGTTTTTGCCTCTGGAAAACGGACCTTTTTGGTCCGAAATTCTGTGTCAAATTGGGTCTTTTTTGATCTGACCATTTCCAGGCGATTTTTTTCAGATTTTTAAACCTTTTTTCTCCATTTTTCAAAAAAAAACTCACAATTCTCTACAACCCGTAATCTATAAACAATTGCCGCTGTCAAATCTCCTGAAATCTCGTTTTCTCCATTCTTGATGACCCATCGGGCAAGTCCGAGTGCCAGATCTCGTGCACCCATTCCTTGAAGACTTTTTCTATTTGAATTGTTTCTTTTTTTTTGGATTTTATCTGAAAAAAATCGGAATATTGCGAAAAATTTCAAAATATGGCGAAAAATTACGAGAACATCAGAAAGCACTATTAAAAGCTACTTATCGTGTTTTGAGCGATTTTCTCTCTGAAAATTTCGATTTTTCAGGTTCGAAATTGCGAATTAACTAAAAAAAATAAGGATTGATCTTTGAAATAGCTTAATATCCCTATTTCTCAATTAAATTTGGCTCGTTTTGTACTTAAAAAATTCGAAATTATCTCTACTTTACAAATAAATAGGTCTTATCAGCGGAAGCTCACAAAATCCAGGTCAAAATCAGAGATAAACACGTGCAGTCATCAAAAATAAACAGAAAAGGGGCGGAGTAGGTGGACGCCCTGCCGCGGGGTTGCAGAAATCGCGTGCCAGGCTTGCGTTTTGATTTTTCGAAAAGTTTTCGGTGCGCGCGCAGCGGTTTTTCTATCAATTTTTCTCATTCTTCGCGGTTTTTTTTTCTG</canonical>
            <polymorphic>AATATGAGACAAATCAATGGTTATCATCATATCAGACCATAGGGGTTCAATGCCTCCTTCGATGATTGCTGTGAGGATGGGAATCCAAACTTCTGGAGCAAAAGTCACTGGTGGCAGCTTGACTAGCTGTTTGATGAGCAATCGCATCGCTTCGCAGATGACGTCAACGTCGGTGTGGTGATCTGAGAAGTGATTTTGAGATGAAAAATCACAGTTTTTGCCTCTGGAAAACGGACCTTTTTGGTCCGAAATTCTGTGTCAAATTGGGTCTTTTTTGATCTGACCATTTCCAGGCGATTTTTTTCAGATTTTTAAACCTTTTTTCTCCATTTTTCAAAAAAAAACTCACAATTCTCTACAACCCGTAATCTATAAACAATTGCCGCTGTCAAATCTCCTGAAATCTCGTTTTCTCCATTCTTGATGACCCATCGGGCAAGTCCGAGTGCCAGATCTCGTGCACCCATTCCTTGAAGACTTTTTCTATTTGAATTGTTTCKTTTTTTTTGGATTTTATCTGAAAAAAATCGGAATATTGCGAAAAATTTCAAAATATGGCGAAAAATTACGAGAACATCAGAAAGCACTATTAAAAGCTACTTATCGTGTTTTGAGCGATTTTCTCTCTGAAAATTTCGATTTTTCAGGTTCGAAATTGCGAATTAACTAAAAAAAATAAGGATTGATCTTTGAAATAGCTTAATATCCCTATTTCTCAATTAAATTTGGCTCGTTTTGTACTTAAAAAATTCGAAATTATCTCTACTTTACAAATAAATAGGTCTTATCAGCGGAAGCTCACAAAATCCAGGTCAAAATCAGAGATAAACACGTGCAGTCATCAAAAATAAACAGAAAAGGGGCGGAGTAGGTGGACGCCCTGCCGCGGGGTTGCAGAAATCGCGTGCCAGGCTTGCGTTTTGATTTTTCGAAAAGTTTTCGGTGCGCGCGCAGCGGTTTTTCTATCAATTTTTCTCATTCTTCGCGGTTTTTTTTTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTCTCTACAACCCGTAATC</pcr_primer_p1>
		<pcr_primer_p2>TTCTGATGTTCTCGTAATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>CAATTCTCTACAACCCGTAATCTATAAACAATTGCCGCTGTCAAATCTCCTGAAATCTCGTTTTCTCCATTCTTGATGACCCATCGGGCAAGTCCGAGTGCCAGATCTCGTGCACCCATTCCTTGAAGACTTTTTCTATTTGAATTGTTTCTTTTTTTTTGGATTTTATCTGAAAAAAATCGGAATATTGCGAAAAATTTCAAAATATGGCGAAAAATTACGAGAACATCAGAA</canonical_amplicon>
		<polymorphic_amplicon>CAATTCTCTACAACCCGTAATCTATAAACAATTGCCGCTGTCAAATCTCCTGAAATCTCGTTTTCTCCATTCTTGATGACCCATCGGGCAAGTCCGAGTGCCAGATCTCGTGCACCCATTCCTTGAAGACTTTTTCTATTTGAATTGTTTCKTTTTTTTTGGATTTTATCTGAAAAAAATCGGAATATTGCGAAAAATTTCAAAATATGGCGAAAAATTACGAGAACATCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35506</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>319195</contig_pos>
        <strand>+</strand>
        <context>AGAAAGACTG[G/T]tatttattta</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATATGGTAATGAATGGGAAAGTGAATCAGAGGGTGCTAGAGAAAGACTG</left_flank>
        <right_flank>TATTTATTTATTTATTTATTTATTTCAACGAAGGGGAGAAAACCACTAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCATTTACTTGTCAAAACAGAAATGTTATGACACATTCTAAAGAATGTATGTTCCGGAAAAGTGGGCGGATCCTAAATTTGAATTTGTAGTTTACTATTAGTTTAGTTCAATTTGAAGAGAATCCGTGAAGACAAAATGGGTTTTAAAGAATTTCAGATTTTTCTGAAGGTTTATTTCAAACTATCCATCAGTTTGCAGCACTTTCGGCGCTTCAAACAGCTGGCTGGCGCGACTTCGGCGCGATTTGATCTAATTTCTTTACTGGTTCGTCGCGGGTTACTGTAACCATTGATTACTGTAACTCATCTAAAAACCATCATTATCATTGATAGAGAGGGGACAAATGACACATATTTATTTGAATTGTAAATGATTCTTCTTTTTTTGAAAAGAGGGAGAAAGAGAAAAAGCTAAATTTCATAGTACTAGAAAGAAAACAAACAATGGGATATGGTAATGAATGGGAAAGTGAATCAGAGGGTGCTAGAGAAAGACTGATATTTATTTATTTATTTATTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATGAAGGAAAAACCGAGTTAGTAATTAGTTGAATTCAAGACAAGAAAATGTTTTAGATTACAGGATAATAGTCGATTTTTGAAAGCCGCTGACGAGGGCTTCACCGGAAACACTTTGGCGGGTAAAGAGTTCCAACATCTGATTACTCTATTAGAGAGAAATTGAGAAGATATTTTTGTTGAGTTTTTGATAAGTGATTTGAGATAGTATTTGTGACGTCGCAATGATTCAGCATTATTAAATATTTCGAAAATTGGAACCTCCATGATAATTTCTTTGGAAACAATAATTTTATACGTGTAGACCTAATCATTATAGAGCCTGCGATTCTCCAAGGAACTTAGCTGACATTCTTCCAGTGCTTCAAAGTATGAAGTGTATGTCATCCT</canonical>
            <polymorphic>CTCATTTACTTGTCAAAACAGAAATGTTATGACACATTCTAAAGAATGTATGTTCCGGAAAAGTGGGCGGATCCTAAATTTGAATTTGTAGTTTACTATTAGTTTAGTTCAATTTGAAGAGAATCCGTGAAGACAAAATGGGTTTTAAAGAATTTCAGATTTTTCTGAAGGTTTATTTCAAACTATCCATCAGTTTGCAGCACTTTCGGCGCTTCAAACAGCTGGCTGGCGCGACTTCGGCGCGATTTGATCTAATTTCTTTACTGGTTCGTCGCGGGTTACTGTAACCATTGATTACTGTAACTCATCTAAAAACCATCATTATCATTGATAGAGAGGGGACAAATGACACATATTTATTTGAATTGTAAATGATTCTTCTTTTTTTGAAAAGAGGGAGAAAGAGAAAAAGCTAAATTTCATAGTACTAGAAAGAAAACAAACAATGGGATATGGTAATGAATGGGAAAGTGAATCAGAGGGTGCTAGAGAAAGACTGKTATTTATTTATTTATTTATTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATGAAGGAAAAACCGAGTTAGTAATTAGTTGAATTCAAGACAAGAAAATGTTTTAGATTACAGGATAATAGTCGATTTTTGAAAGCCGCTGACGAGGGCTTCACCGGAAACACTTTGGCGGGTAAAGAGTTCCAACATCTGATTACTCTATTAGAGAGAAATTGAGAAGATATTTTTGTTGAGTTTTTGATAAGTGATTTGAGATAGTATTTGTGACGTCGCAATGATTCAGCATTATTAAATATTTCGAAAATTGGAACCTCCATGATAATTTCTTTGGAAACAATAATTTTATACGTGTAGACCTAATCATTATAGAGCCTGCGATTCTCCAAGGAACTTAGCTGACATTCTTCCAGTGCTTCAAAGTATGAAGTGTATGTCATCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAATGGGATATGGTAATGAAT</pcr_primer_p1>
		<pcr_primer_p2>TCAAAAATCGACTATTATCCTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACAATGGGATATGGTAATGAATGGGAAAGTGAATCAGAGGGTGCTAGAGAAAGACTGATATTTATTTATTTATTTATTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATGAAGGAAAAACCGAGTTAGTAATTAGTTGAATTCAAGACAAGAAAATGTTTTAGATTACAGGATAATAGTCGATTTTTGA</canonical_amplicon>
		<polymorphic_amplicon>ACAATGGGATATGGTAATGAATGGGAAAGTGAATCAGAGGGTGCTAGAGAAAGACTGKTATTTATTTATTTATTTATTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATGAAGGAAAAACCGAGTTAGTAATTAGTTGAATTCAAGACAAGAAAATGTTTTAGATTACAGGATAATAGTCGATTTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35507</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>341933</contig_pos>
        <strand>+</strand>
        <context>GCACTCTGAA[C/T]ATTGGATTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAGTTTGCGAAAGTTATTTTTAGACTTCACACAAACGTCGCACTCTGAA</left_flank>
        <right_flank>ATTGGATTTGTGAACTTCTCCTTGTTTTCCAACACATACGACCACAGCGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAGTTATGTACAATTTTCCAATCGCCTTTACTTTCAACTTTGATCCAATTCATCTCGATTGCTGTAAAATTGAACTTGCCGCCTTCCGGGCCTTCCGGCCCTTCGCAAGTATACAGAATAAAGTAGTAGAGCTCATCATACTCATAAATCTTCGAATTGGGATACAAAAATGGAACAAAATTATTCATCAGCATTATTAATTGATTCCTCGAGCGCCATAATTTCCCCCATGAGGTGTTTCTTTGCATTCACGAATGGAGTGCCGGAGTGTTGAATATCCTAAAACTTCATATTGGTTTGTAAACTACTACCAAGTAGCTCTGATATTCCTACCTCGTGCTGTGGAGTTTTTAGGTGAGGGTTGAATCGGGCATAGTAGTCCACCCAGACTTGAAGAACACAGAATGAGGGATTCACATAGAGAACTTTTTTGGTTTCTGAAACAATACAAGTTTGCGAAAGTTATTTTTAGACTTCACACAAACGTCGCACTCTGAATATTGGATTTGTGAACTTCTCCTTGTTTTCCAACACATACGACCACAGCGATATTGTTGTTTCCGCACATTTCTGAAGTATGTCAAAGCTTATATCTTTACTATTAACTATCACAATGTATGTGTCCGTTTTAGCGAGATGACGCCCCGATTTTCCGTTTTCGAAATTTCGATTTTGAAGCCTTCTGGAGACGTTCTTTGGTTTCGCGCCGAAGGCGCACCAGACAGCTGTTTGAAGCGCCGGAGGCCCGCCAAACAGGCTGGTTGACTACTAAACCAATATTACTCACATTATCCAGTAATCTAATTTTCTCCGAATTGAACAAGAACGTTCCGTATCGACAAGAGTACAGCTCATCAAGAATATAGATTAGCAAATCTTGTGTGAATTCAAAAGCCCATGGGAACTGACGCATGATTTGCCACACGCAGTCAAAAAATTGAACAAAGATTGGTGATCGTTCGCCATCCCCGTGCGAATCCTCTCCGTGACCAATTCGTT</canonical>
            <polymorphic>CAAGTTATGTACAATTTTCCAATCGCCTTTACTTTCAACTTTGATCCAATTCATCTCGATTGCTGTAAAATTGAACTTGCCGCCTTCCGGGCCTTCCGGCCCTTCGCAAGTATACAGAATAAAGTAGTAGAGCTCATCATACTCATAAATCTTCGAATTGGGATACAAAAATGGAACAAAATTATTCATCAGCATTATTAATTGATTCCTCGAGCGCCATAATTTCCCCCATGAGGTGTTTCTTTGCATTCACGAATGGAGTGCCGGAGTGTTGAATATCCTAAAACTTCATATTGGTTTGTAAACTACTACCAAGTAGCTCTGATATTCCTACCTCGTGCTGTGGAGTTTTTAGGTGAGGGTTGAATCGGGCATAGTAGTCCACCCAGACTTGAAGAACACAGAATGAGGGATTCACATAGAGAACTTTTTTGGTTTCTGAAACAATACAAGTTTGCGAAAGTTATTTTTAGACTTCACACAAACGTCGCACTCTGAAYATTGGATTTGTGAACTTCTCCTTGTTTTCCAACACATACGACCACAGCGATATTGTTGTTTCCGCACATTTCTGAAGTATGTCAAAGCTTATATCTTTACTATTAACTATCACAATGTATGTGTCCGTTTTAGCGAGATGACGCCCCGATTTTCCGTTTTCGAAATTTCGATTTTGAAGCCTTCTGGAGACGTTCTTTGGTTTCGCGCCGAAGGCGCACCAGACAGCTGTTTGAAGCGCCGGAGGCCCGCCAAACAGGCTGGTTGACTACTAAACCAATATTACTCACATTATCCAGTAATCTAATTTTCTCCGAATTGAACAAGAACGTTCCGTATCGACAAGAGTACAGCTCATCAAGAATATAGATTAGCAAATCTTGTGTGAATTCAAAAGCCCATGGGAACTGACGCATGATTTGCCACACGCAGTCAAAAAATTGAACAAAGATTGGTGATCGTTCGCCATCCCCGTGCGAATCCTCTCCGTGACCAATTCGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 279 221</canonical_bands>
                <polymorphic_bands>779 221</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACTTGAAGAACACAGAATGAG</pcr_primer_p1>
		<pcr_primer_p2>AACGGACACATACATTGTGATA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AGACTTGAAGAACACAGAATGAGGGATTCACATAGAGAACTTTTTTGGTTTCTGAAACAATACAAGTTTGCGAAAGTTATTTTTAGACTTCACACAAACGTCGCACTCTGAATATTGGATTTGTGAACTTCTCCTTGTTTTCCAACACATACGACCACAGCGATATTGTTGTTTCCGCACATTTCTGAAGTATGTCAAAGCTTATATCTTTACTATTAACTATCACAATGTATGTGTCCGTT</canonical_amplicon>
		<polymorphic_amplicon>AGACTTGAAGAACACAGAATGAGGGATTCACATAGAGAACTTTTTTGGTTTCTGAAACAATACAAGTTTGCGAAAGTTATTTTTAGACTTCACACAAACGTCGCACTCTGAAYATTGGATTTGTGAACTTCTCCTTGTTTTCCAACACATACGACCACAGCGATATTGTTGTTTCCGCACATTTCTGAAGTATGTCAAAGCTTATATCTTTACTATTAACTATCACAATGTATGTGTCCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35508</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>344041</contig_pos>
        <strand>+</strand>
        <context>CATCTGAAAT[C/G]GAAGCGAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AACTTGTTTGGTGCATATTTAGACTTTGAGAATCATTTGACATCTGAAAT</left_flank>
        <right_flank>GAAGCGAGAAAAATTTCTGGAAATTTTTTTTTTGAATTCTCTGACCACTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTCTCATTTTCAGAATTTTCGGAGAAGTTTCAGATGTAACAGTGGTCCAAAAATCCAAAAAAAAACTTTTCTTTCAGAATTTTTTCTGGCTTTGTCCAAATATGCGCCAAAAAAGTTTTGAAGAATTTTGGAAGTCGGGCTCTCGAGTTATGATGCTCAGAGCACAAAAGGTATGTGCCGGCATTTTTGCCATAACTCAGCTGAAAATGTATTTTTGATGGTCAAAATTTCACAAATGATGCATTTTGAGTTGCTTTTTTGTTTTATGCCAAAAGTTTTTCAATTGTAGAAATTTTTTACTATTTTTATGTTCTCAAAACTATTTTTTAGGTCAAAAGAAATGAAAAAGTTTTGTTCTACAATTGGAAAACTTTTCGACAAAAAACTAATAAACAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTAAAAAACTTGTTTGGTGCATATTTAGACTTTGAGAATCATTTGACATCTGAAATCGAAGCGAGAAAAATTTCTGGAAATTTTTTTTTTGAATTCTCTGACCACTGTTACATCTGAAAATGCGAAATTTTCAAAAACCCGATTTTCATGTTTTTGGATTTTACAGCTATTCTCATGCAAAATTTTGAGTCAATTGAGCAATTTTGAACAAAGTTATGAATGTTCGAAAAAACTCTCCTCACCACTTCTCGCCACTGTATATCTACACTTACGAAGTTATGAGAAATAGGGAATGCATAGCGATTCAGTGCATCACAAATACTCTTTCGATTCGAAGTGGGTAGGCATGCGAATTTGTAGTTTCGATAATCTTTGCAAAGCACGATAAACCCATAATTATCGTCTCTTCTCATTGCAGCACTTCTTGATTGTCCTCCAATTTTTTCTACTTTCGAAACTTGTCCGAGAGGTACATCAAGCTTCCATCGCTGAAATTCTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTAGCGTCAGATTCGTTCGATATAAAAAA</canonical>
            <polymorphic>AAATTTCTCATTTTCAGAATTTTCGGAGAAGTTTCAGATGTAACAGTGGTCCAAAAATCCAAAAAAAAACTTTTCTTTCAGAATTTTTTCTGGCTTTGTCCAAATATGCGCCAAAAAAGTTTTGAAGAATTTTGGAAGTCGGGCTCTCGAGTTATGATGCTCAGAGCACAAAAGGTATGTGCCGGCATTTTTGCCATAACTCAGCTGAAAATGTATTTTTGATGGTCAAAATTTCACAAATGATGCATTTTGAGTTGCTTTTTTGTTTTATGCCAAAAGTTTTTCAATTGTAGAAATTTTTTACTATTTTTATGTTCTCAAAACTATTTTTTAGGTCAAAAGAAATGAAAAAGTTTTGTTCTACAATTGGAAAACTTTTCGACAAAAAACTAATAAACAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTAAAAAACTTGTTTGGTGCATATTTAGACTTTGAGAATCATTTGACATCTGAAATSGAAGCGAGAAAAATTTCTGGAAATTTTTTTTTTGAATTCTCTGACCACTGTTACATCTGAAAATGCGAAATTTTCAAAAACCCGATTTTCATGTTTTTGGATTTTACAGCTATTCTCATGCAAAATTTTGAGTCAATTGAGCAATTTTGAACAAAGTTATGAATGTTCGAAAAAACTCTCCTCACCACTTCTCGCCACTGTATATCTACACTTACGAAGTTATGAGAAATAGGGAATGCATAGCGATTCAGTGCATCACAAATACTCTTTCGATTCGAAGTGGGTAGGCATGCGAATTTGTAGTTTCGATAATCTTTGCAAAGCACGATAAACCCATAATTATCGTCTCTTCTCATTGCAGCACTTCTTGATTGTCCTCCAATTTTTTCTACTTTCGAAACTTGTCCGAGAGGTACATCAAGCTTCCATCGCTGAAATTCTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTAGCGTCAGATTCGTTCGATATAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>232 168 148 120 103 93 89 31 11 5</canonical_bands>
                <polymorphic_bands>288 232 148 103 93 89 31 11 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAGCATCAAAAATACATTAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCGAACATTCATAACTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTGAGCATCAAAAATACATTAAAAAACTTGTTTGGTGCATATTTAGACTTTGAGAATCATTTGACATCTGAAATCGAAGCGAGAAAAATTTCTGGAAATTTTTTTTTTGAATTCTCTGACCACTGTTACATCTGAAAATGCGAAATTTTCAAAAACCCGATTTTCATGTTTTTGGATTTTACAGCTATTCTCATGCAAAATTTTGAGTCAATTGAGCAATTTTGAACAAAGTTATGAATGTTCGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTGAGCATCAAAAATACATTAAAAAACTTGTTTGGTGCATATTTAGACTTTGAGAATCATTTGACATCTGAAATSGAAGCGAGAAAAATTTCTGGAAATTTTTTTTTTGAATTCTCTGACCACTGTTACATCTGAAAATGCGAAATTTTCAAAAACCCGATTTTCATGTTTTTGGATTTTACAGCTATTCTCATGCAAAATTTTGAGTCAATTGAGCAATTTTGAACAAAGTTATGAATGTTCGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35509</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>344058</contig_pos>
        <strand>+</strand>
        <context>AGAAAAATTT[C/T]TGGAAAYTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTAGACTTTGAGAATCATTTGACATCTGAAATCGAAGCGAGAAAAATTT</left_flank>
        <right_flank>TGGAAATTTTTTTTTTGAATTCTCTGACCACTGTTACATCTGAAAATGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTCGGAGAAGTTTCAGATGTAACAGTGGTCCAAAAATCCAAAAAAAAACTTTTCTTTCAGAATTTTTTCTGGCTTTGTCCAAATATGCGCCAAAAAAGTTTTGAAGAATTTTGGAAGTCGGGCTCTCGAGTTATGATGCTCAGAGCACAAAAGGTATGTGCCGGCATTTTTGCCATAACTCAGCTGAAAATGTATTTTTGATGGTCAAAATTTCACAAATGATGCATTTTGAGTTGCTTTTTTGTTTTATGCCAAAAGTTTTTCAATTGTAGAAATTTTTTACTATTTTTATGTTCTCAAAACTATTTTTTAGGTCAAAAGAAATGAAAAAGTTTTGTTCTACAATTGGAAAACTTTTCGACAAAAAACTAATAAACAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTAAAAAACTTGTTTGGTGCATATTTAGACTTTGAGAATCATTTGACATCTGAAATCGAAGCGAGAAAAATTTCTGGAAATTTTTTTTTTGAATTCTCTGACCACTGTTACATCTGAAAATGCGAAATTTTCAAAAACCCGATTTTCATGTTTTTGGATTTTACAGCTATTCTCATGCAAAATTTTGAGTCAATTGAGCAATTTTGAACAAAGTTATGAATGTTCGAAAAAACTCTCCTCACCACTTCTCGCCACTGTATATCTACACTTACGAAGTTATGAGAAATAGGGAATGCATAGCGATTCAGTGCATCACAAATACTCTTTCGATTCGAAGTGGGTAGGCATGCGAATTTGTAGTTTCGATAATCTTTGCAAAGCACGATAAACCCATAATTATCGTCTCTTCTCATTGCAGCACTTCTTGATTGTCCTCCAATTTTTTCTACTTTCGAAACTTGTCCGAGAGGTACATCAAGCTTCCATCGCTGAAATTCTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTAGCGTCAGATTCGTTCGATATAAAAAAGGTCAAAACGATGTCAG</canonical>
            <polymorphic>AATTTTCGGAGAAGTTTCAGATGTAACAGTGGTCCAAAAATCCAAAAAAAAACTTTTCTTTCAGAATTTTTTCTGGCTTTGTCCAAATATGCGCCAAAAAAGTTTTGAAGAATTTTGGAAGTCGGGCTCTCGAGTTATGATGCTCAGAGCACAAAAGGTATGTGCCGGCATTTTTGCCATAACTCAGCTGAAAATGTATTTTTGATGGTCAAAATTTCACAAATGATGCATTTTGAGTTGCTTTTTTGTTTTATGCCAAAAGTTTTTCAATTGTAGAAATTTTTTACTATTTTTATGTTCTCAAAACTATTTTTTAGGTCAAAAGAAATGAAAAAGTTTTGTTCTACAATTGGAAAACTTTTCGACAAAAAACTAATAAACAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTAAAAAACTTGTTTGGTGCATATTTAGACTTTGAGAATCATTTGACATCTGAAATCGAAGCGAGAAAAATTTYTGGAAATTTTTTTTTTGAATTCTCTGACCACTGTTACATCTGAAAATGCGAAATTTTCAAAAACCCGATTTTCATGTTTTTGGATTTTACAGCTATTCTCATGCAAAATTTTGAGTCAATTGAGCAATTTTGAACAAAGTTATGAATGTTCGAAAAAACTCTCCTCACCACTTCTCGCCACTGTATATCTACACTTACGAAGTTATGAGAAATAGGGAATGCATAGCGATTCAGTGCATCACAAATACTCTTTCGATTCGAAGTGGGTAGGCATGCGAATTTGTAGTTTCGATAATCTTTGCAAAGCACGATAAACCCATAATTATCGTCTCTTCTCATTGCAGCACTTCTTGATTGTCCTCCAATTTTTTCTACTTTCGAAACTTGTCCGAGAGGTACATCAAGCTTCCATCGCTGAAATTCTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTAGCGTCAGATTCGTTCGATATAAAAAAGGTCAAAACGATGTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>505 427 68</canonical_bands>
                <polymorphic_bands>932 68</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>371 350 150 129</canonical_bands>
                <polymorphic_bands>721 150 129</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGCATATTTAGACTTTGAGAA</pcr_primer_p1>
		<pcr_primer_p2>TAGATATACAGTGGCGAGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTGCATATTTAGACTTTGAGAATCATTTGACATCTGAAATCGAAGCGAGAAAAATTTCTGGAAATTTTTTTTTTGAATTCTCTGACCACTGTTACATCTGAAAATGCGAAATTTTCAAAAACCCGATTTTCATGTTTTTGGATTTTACAGCTATTCTCATGCAAAATTTTGAGTCAATTGAGCAATTTTGAACAAAGTTATGAATGTTCGAAAAAACTCTCCTCACCACTTCTCGCCACTGTATATCTA</canonical_amplicon>
		<polymorphic_amplicon>GGTGCATATTTAGACTTTGAGAATCATTTGACATCTGAAATCGAAGCGAGAAAAATTTYTGGAAATTTTTTTTTTGAATTCTCTGACCACTGTTACATCTGAAAATGCGAAATTTTCAAAAACCCGATTTTCATGTTTTTGGATTTTACAGCTATTCTCATGCAAAATTTTGAGTCAATTGAGCAATTTTGAACAAAGTTATGAATGTTCGAAAAAACTCTCCTCACCACTTCTCGCCACTGTATATCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35510</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>344065</contig_pos>
        <strand>+</strand>
        <context>TTTYTGGAAA[C/T]TTTTTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGAGAATCATTTGACATCTGAAATCGAAGCGAGAAAAATTTCTGGAAA</left_flank>
        <right_flank>TTTTTTTTTGAATTCTCTGACCACTGTTACATCTGAAAATGCGAAATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGAAGTTTCAGATGTAACAGTGGTCCAAAAATCCAAAAAAAAACTTTTCTTTCAGAATTTTTTCTGGCTTTGTCCAAATATGCGCCAAAAAAGTTTTGAAGAATTTTGGAAGTCGGGCTCTCGAGTTATGATGCTCAGAGCACAAAAGGTATGTGCCGGCATTTTTGCCATAACTCAGCTGAAAATGTATTTTTGATGGTCAAAATTTCACAAATGATGCATTTTGAGTTGCTTTTTTGTTTTATGCCAAAAGTTTTTCAATTGTAGAAATTTTTTACTATTTTTATGTTCTCAAAACTATTTTTTAGGTCAAAAGAAATGAAAAAGTTTTGTTCTACAATTGGAAAACTTTTCGACAAAAAACTAATAAACAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTAAAAAACTTGTTTGGTGCATATTTAGACTTTGAGAATCATTTGACATCTGAAATCGAAGCGAGAAAAATTTCTGGAAATTTTTTTTTTGAATTCTCTGACCACTGTTACATCTGAAAATGCGAAATTTTCAAAAACCCGATTTTCATGTTTTTGGATTTTACAGCTATTCTCATGCAAAATTTTGAGTCAATTGAGCAATTTTGAACAAAGTTATGAATGTTCGAAAAAACTCTCCTCACCACTTCTCGCCACTGTATATCTACACTTACGAAGTTATGAGAAATAGGGAATGCATAGCGATTCAGTGCATCACAAATACTCTTTCGATTCGAAGTGGGTAGGCATGCGAATTTGTAGTTTCGATAATCTTTGCAAAGCACGATAAACCCATAATTATCGTCTCTTCTCATTGCAGCACTTCTTGATTGTCCTCCAATTTTTTCTACTTTCGAAACTTGTCCGAGAGGTACATCAAGCTTCCATCGCTGAAATTCTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTAGCGTCAGATTCGTTCGATATAAAAAAGGTCAAAACGATGTCAGATAAATT</canonical>
            <polymorphic>GGAGAAGTTTCAGATGTAACAGTGGTCCAAAAATCCAAAAAAAAACTTTTCTTTCAGAATTTTTTCTGGCTTTGTCCAAATATGCGCCAAAAAAGTTTTGAAGAATTTTGGAAGTCGGGCTCTCGAGTTATGATGCTCAGAGCACAAAAGGTATGTGCCGGCATTTTTGCCATAACTCAGCTGAAAATGTATTTTTGATGGTCAAAATTTCACAAATGATGCATTTTGAGTTGCTTTTTTGTTTTATGCCAAAAGTTTTTCAATTGTAGAAATTTTTTACTATTTTTATGTTCTCAAAACTATTTTTTAGGTCAAAAGAAATGAAAAAGTTTTGTTCTACAATTGGAAAACTTTTCGACAAAAAACTAATAAACAACTCAAAACACATCATTTGTGAAATTTTGAGCATCAAAAATACATTAAAAAACTTGTTTGGTGCATATTTAGACTTTGAGAATCATTTGACATCTGAAATCGAAGCGAGAAAAATTTCTGGAAAYTTTTTTTTTGAATTCTCTGACCACTGTTACATCTGAAAATGCGAAATTTTCAAAAACCCGATTTTCATGTTTTTGGATTTTACAGCTATTCTCATGCAAAATTTTGAGTCAATTGAGCAATTTTGAACAAAGTTATGAATGTTCGAAAAAACTCTCCTCACCACTTCTCGCCACTGTATATCTACACTTACGAAGTTATGAGAAATAGGGAATGCATAGCGATTCAGTGCATCACAAATACTCTTTCGATTCGAAGTGGGTAGGCATGCGAATTTGTAGTTTCGATAATCTTTGCAAAGCACGATAAACCCATAATTATCGTCTCTTCTCATTGCAGCACTTCTTGATTGTCCTCCAATTTTTTCTACTTTCGAAACTTGTCCGAGAGGTACATCAAGCTTCCATCGCTGAAATTCTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTAGCGTCAGATTCGTTCGATATAAAAAAGGTCAAAACGATGTCAGATAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>171 141 127 102 90 89 65 57 55 46 34 13 10</canonical_bands>
                <polymorphic_bands>171 141 127 102 90 89 65 57 55 46 34 23</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>152 102 90 85 70 57 57 56 55 55 46 43 43 34 13 11 10 9 8 4</canonical_bands>
                <polymorphic_bands>152 102 90 85 70 57 57 56 55 55 46 43 43 34 23 11 9 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGCATATTTAGACTTTGAGAA</pcr_primer_p1>
		<pcr_primer_p2>TAGATATACAGTGGCGAGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTGCATATTTAGACTTTGAGAATCATTTGACATCTGAAATCGAAGCGAGAAAAATTTCTGGAAATTTTTTTTTTGAATTCTCTGACCACTGTTACATCTGAAAATGCGAAATTTTCAAAAACCCGATTTTCATGTTTTTGGATTTTACAGCTATTCTCATGCAAAATTTTGAGTCAATTGAGCAATTTTGAACAAAGTTATGAATGTTCGAAAAAACTCTCCTCACCACTTCTCGCCACTGTATATCTA</canonical_amplicon>
		<polymorphic_amplicon>GGTGCATATTTAGACTTTGAGAATCATTTGACATCTGAAATCGAAGCGAGAAAAATTTCTGGAAAYTTTTTTTTTGAATTCTCTGACCACTGTTACATCTGAAAATGCGAAATTTTCAAAAACCCGATTTTCATGTTTTTGGATTTTACAGCTATTCTCATGCAAAATTTTGAGTCAATTGAGCAATTTTGAACAAAGTTATGAATGTTCGAAAAAACTCTCCTCACCACTTCTCGCCACTGTATATCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35511</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>359747</contig_pos>
        <strand>+</strand>
        <context>TTGAACACAA[G/T]TTTTTTTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCCCAAAAAGGATCAGAGATAATCCTCTGATAATATGTCTTGAACACAA</left_flank>
        <right_flank>TTTTTTTGAATAGAATTCGTTAGAGAGATTTGTGGGCGGATTATGTATCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTTTACTTAAATTTCAAAGAATTTTTTAAAATCAAAATTTGTGAAATTTTATAGCTTTTAATTTTGTAGTTTACCTCTTTTAATTAAAATTTGATCTACCTAGTGAAAATGCGCCCTAATGACAACTAAATATCTGTCGAAACCAGAGCTGCGTATGATTTTGGATGGCTCATAACTCTCCTAATTTTTATTCAATTATGAAGACTTTTTTTTCAAAATGTGGGAAGATTTATGCCATTCATTTTTGCTGTTATACACTTTTAAAGAAAATTTGATCTAAGCTGTGAAAATGCGCTCTAATGAAACCCTACAAAACTCTTGTTGGTTTTTGGCCTAAAATTCTGATGACGTCAATTTCTTTTTCCTAGATTTTTCTAAATCTTGTATTTCTTAAGACACAGAGAAAGTTCCAGATTTTTTCCAAGATTTGATTACGTCAGTAGTCCCTTCCCAAAAAGGATCAGAGATAATCCTCTGATAATATGTCTTGAACACAATTTTTTTTGAATAGAATTCGTTAGAGAGATTTGTGGGCGGATTATGTATCGAATAGATTTTTTTATTTCTTTTGGATTTTTCTAGAATTCCAGAATAACAATGAGCAATGAATAAATTCAGGGGAAAGGAAAACAAGGAAAAAGGAAAAAAGAAGCAACCCAATTTTCGAACAATCTTAACTATTGGAATATTGGCTAGAACTTTTTGAAAATGTACATAAATTGTGCAGAATTTTATTATCTACAATTTATTATTTAAACACTCTTCACAAAAATTAGATCTACCTAGTGAAAATGCGCTCTAATGACAGTATGTCATTTTTGACGTATAGAAATTGAGATGACCTATAACTTTTGTAGTTTTCAACCAATTCGAAAGATTTTTAGATCAAAAAGTGTAAAATATTATAATCAACAAATTTGCTGTAATACACTTTTTTATGAAGGTTTGACCGCCGTGGTGAAAATGTGCTCTTATGAGAATTCACCTTAATAATGGAA</canonical>
            <polymorphic>AGTTTTACTTAAATTTCAAAGAATTTTTTAAAATCAAAATTTGTGAAATTTTATAGCTTTTAATTTTGTAGTTTACCTCTTTTAATTAAAATTTGATCTACCTAGTGAAAATGCGCCCTAATGACAACTAAATATCTGTCGAAACCAGAGCTGCGTATGATTTTGGATGGCTCATAACTCTCCTAATTTTTATTCAATTATGAAGACTTTTTTTTCAAAATGTGGGAAGATTTATGCCATTCATTTTTGCTGTTATACACTTTTAAAGAAAATTTGATCTAAGCTGTGAAAATGCGCTCTAATGAAACCCTACAAAACTCTTGTTGGTTTTTGGCCTAAAATTCTGATGACGTCAATTTCTTTTTCCTAGATTTTTCTAAATCTTGTATTTCTTAAGACACAGAGAAAGTTCCAGATTTTTTCCAAGATTTGATTACGTCAGTAGTCCCTTCCCAAAAAGGATCAGAGATAATCCTCTGATAATATGTCTTGAACACAAKTTTTTTTGAATAGAATTCGTTAGAGAGATTTGTGGGCGGATTATGTATCGAATAGATTTTTTTATTTCTTTTGGATTTTTCTAGAATTCCAGAATAACAATGAGCAATGAATAAATTCAGGGGAAAGGAAAACAAGGAAAAAGGAAAAAAGAAGCAACCCAATTTTCGAACAATCTTAACTATTGGAATATTGGCTAGAACTTTTTGAAAATGTACATAAATTGTGCAGAATTTTATTATCTACAATTTATTATTTAAACACTCTTCACAAAAATTAGATCTACCTAGTGAAAATGCGCTCTAATGACAGTATGTCATTTTTGACGTATAGAAATTGAGATGACCTATAACTTTTGTAGTTTTCAACCAATTCGAAAGATTTTTAGATCAAAAAGTGTAAAATATTATAATCAACAAATTTGCTGTAATACACTTTTTTATGAAGGTTTGACCGCCGTGGTGAAAATGTGCTCTTATGAGAATTCACCTTAATAATGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>143 95 75 71 69 64 60 59 48 47 36 29 28 22 20 16 16 15 15 15 11 11 10 10 9 6</canonical_bands>
                <polymorphic_bands>159 95 75 71 69 64 60 59 48 47 36 29 28 22 20 16 15 15 15 11 11 10 10 9 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGATGACGTCAATTTCTT</pcr_primer_p1>
		<pcr_primer_p2>GGAATTCTAGAAAAATCCAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGATGACGTCAATTTCTTTTTCCTAGATTTTTCTAAATCTTGTATTTCTTAAGACACAGAGAAAGTTCCAGATTTTTTCCAAGATTTGATTACGTCAGTAGTCCCTTCCCAAAAAGGATCAGAGATAATCCTCTGATAATATGTCTTGAACACAATTTTTTTTGAATAGAATTCGTTAGAGAGATTTGTGGGCGGATTATGTATCGAATAGATTTTTTTATTTCTTTTGGATTTTTCTAGAATTCC</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGATGACGTCAATTTCTTTTTCCTAGATTTTTCTAAATCTTGTATTTCTTAAGACACAGAGAAAGTTCCAGATTTTTTCCAAGATTTGATTACGTCAGTAGTCCCTTCCCAAAAAGGATCAGAGATAATCCTCTGATAATATGTCTTGAACACAAKTTTTTTTGAATAGAATTCGTTAGAGAGATTTGTGGGCGGATTATGTATCGAATAGATTTTTTTATTTCTTTTGGATTTTTCTAGAATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35512</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>375578</contig_pos>
        <strand>-</strand>
        <context>GCCCAAAGTG[A/T]AWGTTCATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACGTATTGATCGAAGCAAGAAAAGGCTGGCGCACACTTTGCCCAAAGTG</left_flank>
        <right_flank>ATGTTCATTTTTTAATGTATTTGAAAATATGTATCTTCATCATTTTTCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAAAAATGGAGCATTTTTTCAAGATATAATAAAAACGGGCATTATGATATAACCAGGGACCTGGCGGGCCATCGCGGACCATCGCGGACCCATCCATAGCTTCTTTTAGAATGCGAAATCTTGAAAACTTCCTTTTCTCATTTCATATTTTGAAGAGGCTTGATATGACAGTAACCACGACAACAGAACCATTTGATCCGGGATCCAGAATGTATGAGGCAGAATCTTTGAAACTCGATCAGTTCGAACACAATGTTCCTGAAGTATTACGTCATTTTCAAGGAAGGCAAGCATTTTTGAAAATCTTAAGATTCGATATTCCAGACTTGATTAAATTTGTGAATGAGTGGAAATCAGGAGAAGGATTCCAGAAGCTGGAGTACCTGAAAATCGAGGTACTCACGGATTACATTCCCCCGACGCAAGTTCTTCGTGGAGTTATGGAAAAACGTATTGATCGAAGCAAGAAAAGGCTGGCGCACACTTTGCCCAAAGTGTATGTTCATTTTTTAATGTATTTGAAAATATGTATCTTCATCATTTTTCAGATTCATCGATGATAAGGAAAAACCAAACACGGAACCAATCATAAGCCCCACCTATGTCGTTAGAGAATCAGACAATCGTGTAGCATCCATTCTGATTCAAAACAGTACGTTCAGTTTTGGAGTATGGGATGTGACAGAGGAAGAGACATTTTTGAAATTTTAATTAATTCATTCCACATCTCAATAAACTTGTGTACACTACTAGTCTGTGTCAACAACCTGAGAAAGAGGAACCCTTAACTTTGATAAATTTTAATGGGTTTCTGTCAAAGGTATGGAAAAGTTGTCAACTGATAAAATTTTTATCATAATATAAGAAACATTTTATCAGTTAACACATTTTCTATATCTTGCACAGGAAGGAGATCTATGGGATCAAACTTAACAGTGTGGGGACCCTTTTATTTCAGGTGGGATGAGGAAGGGGCGTGTCAACTGGTAATATATATT</canonical>
            <polymorphic>CTGAAAAATGGAGCATTTTTTCAAGATATAATAAAAACGGGCATTATGATATAACCAGGGACCTGGCGGGCCATCGCGGACCATCGCGGACCCATCCATAGCTTCTTTTAGAATGCGAAATCTTGAAAACTTCCTTTTCTCATTTCATATTTTGAAGAGGCTTGATATGACAGTAACCACGACAACAGAACCATTTGATCCGGGATCCAGAATGTATGAGGCAGAATCTTTGAAACTCGATCAGTTCGAACACAATGTTCCTGAAGTATTACGTCATTTTCAAGGAAGGCAAGCATTTTTGAAAATCTTAAGATTCGATATTCCAGACTTGATTAAATTTGTGAATGAGTGGAAATCAGGAGAAGGATTCCAGAAGCTGGAGTACCTGAAAATCGAGGTACTCACGGATTACATTCCCCCGACGCAAGTTCTTCGTGGAGTTATGGAAAAACGTATTGATCGAAGCAAGAAAAGGCTGGCGCACACTTTGCCCAAAGTGWATGTTCATTTTTTAATGTATTTGAAAATATGTATCTTCATCATTTTTCAGATTCATCGATGATAAGGAAAAACCAAACACGGAACCAATCATAAGCCCCACCTATGTCGTTAGAGAATCAGACAATCGTGTAGCATCCATTCTGATTCAAAACAGTACGTTCAGTTTTGGAGTATGGGATGTGACAGAGGAAGAGACATTTTTGAAATTTTAATTAATTCATTCCACATCTCAATAAACTTGTGTACACTACTAGTCTGTGTCAACAACCTGAGAAAGAGGAACCCTTAACTTTGATAAATTTTAATGGGTTTCTGTCAAAGGTATGGAAAAGTTGTCAACTGATAAAATTTTTATCATAATATAAGAAACATTTTATCAGTTAACACATTTTCTATATCTTGCACAGGAAGGAGATCTATGGGATCAAACTTAACAGTGTGGGGACCCTTTTATTTCAGGTGGGATGAGGAAGGGGCGTGTCAACTGGTAATATATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGATTCGATATTCCAGACTTG</pcr_primer_p1>
		<pcr_primer_p2>GATGAATCTGAAAAATGATGAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAAGATTCGATATTCCAGACTTGATTAAATTTGTGAATGAGTGGAAATCAGGAGAAGGATTCCAGAAGCTGGAGTACCTGAAAATCGAGGTACTCACGGATTACATTCCCCCGACGCAAGTTCTTCGTGGAGTTATGGAAAAACGTATTGATCGAAGCAAGAAAAGGCTGGCGCACACTTTGCCCAAAGTGTATGTTCATTTTTTAATGTATTTGAAAATATGTATCTTCATCATTTTTCAGATTCATC</canonical_amplicon>
		<polymorphic_amplicon>TAAGATTCGATATTCCAGACTTGATTAAATTTGTGAATGAGTGGAAATCAGGAGAAGGATTCCAGAAGCTGGAGTACCTGAAAATCGAGGTACTCACGGATTACATTCCCCCGACGCAAGTTCTTCGTGGAGTTATGGAAAAACGTATTGATCGAAGCAAGAAAAGGCTGGCGCACACTTTGCCCAAAGTGWATGTTCATTTTTTAATGTATTTGAAAATATGTATCTTCATCATTTTTCAGATTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35513</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>375580</contig_pos>
        <strand>-</strand>
        <context>CCAAAGTGWA[A/T]GTTCATTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGTATTGATCGAAGCAAGAAAAGGCTGGCGCACACTTTGCCCAAAGTGTA</left_flank>
        <right_flank>GTTCATTTTTTAATGTATTTGAAAATATGTATCTTCATCATTTTTCAGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAATGGAGCATTTTTTCAAGATATAATAAAAACGGGCATTATGATATAACCAGGGACCTGGCGGGCCATCGCGGACCATCGCGGACCCATCCATAGCTTCTTTTAGAATGCGAAATCTTGAAAACTTCCTTTTCTCATTTCATATTTTGAAGAGGCTTGATATGACAGTAACCACGACAACAGAACCATTTGATCCGGGATCCAGAATGTATGAGGCAGAATCTTTGAAACTCGATCAGTTCGAACACAATGTTCCTGAAGTATTACGTCATTTTCAAGGAAGGCAAGCATTTTTGAAAATCTTAAGATTCGATATTCCAGACTTGATTAAATTTGTGAATGAGTGGAAATCAGGAGAAGGATTCCAGAAGCTGGAGTACCTGAAAATCGAGGTACTCACGGATTACATTCCCCCGACGCAAGTTCTTCGTGGAGTTATGGAAAAACGTATTGATCGAAGCAAGAAAAGGCTGGCGCACACTTTGCCCAAAGTGTATGTTCATTTTTTAATGTATTTGAAAATATGTATCTTCATCATTTTTCAGATTCATCGATGATAAGGAAAAACCAAACACGGAACCAATCATAAGCCCCACCTATGTCGTTAGAGAATCAGACAATCGTGTAGCATCCATTCTGATTCAAAACAGTACGTTCAGTTTTGGAGTATGGGATGTGACAGAGGAAGAGACATTTTTGAAATTTTAATTAATTCATTCCACATCTCAATAAACTTGTGTACACTACTAGTCTGTGTCAACAACCTGAGAAAGAGGAACCCTTAACTTTGATAAATTTTAATGGGTTTCTGTCAAAGGTATGGAAAAGTTGTCAACTGATAAAATTTTTATCATAATATAAGAAACATTTTATCAGTTAACACATTTTCTATATCTTGCACAGGAAGGAGATCTATGGGATCAAACTTAACAGTGTGGGGACCCTTTTATTTCAGGTGGGATGAGGAAGGGGCGTGTCAACTGGTAATATATATTCT</canonical>
            <polymorphic>GAAAAATGGAGCATTTTTTCAAGATATAATAAAAACGGGCATTATGATATAACCAGGGACCTGGCGGGCCATCGCGGACCATCGCGGACCCATCCATAGCTTCTTTTAGAATGCGAAATCTTGAAAACTTCCTTTTCTCATTTCATATTTTGAAGAGGCTTGATATGACAGTAACCACGACAACAGAACCATTTGATCCGGGATCCAGAATGTATGAGGCAGAATCTTTGAAACTCGATCAGTTCGAACACAATGTTCCTGAAGTATTACGTCATTTTCAAGGAAGGCAAGCATTTTTGAAAATCTTAAGATTCGATATTCCAGACTTGATTAAATTTGTGAATGAGTGGAAATCAGGAGAAGGATTCCAGAAGCTGGAGTACCTGAAAATCGAGGTACTCACGGATTACATTCCCCCGACGCAAGTTCTTCGTGGAGTTATGGAAAAACGTATTGATCGAAGCAAGAAAAGGCTGGCGCACACTTTGCCCAAAGTGTAWGTTCATTTTTTAATGTATTTGAAAATATGTATCTTCATCATTTTTCAGATTCATCGATGATAAGGAAAAACCAAACACGGAACCAATCATAAGCCCCACCTATGTCGTTAGAGAATCAGACAATCGTGTAGCATCCATTCTGATTCAAAACAGTACGTTCAGTTTTGGAGTATGGGATGTGACAGAGGAAGAGACATTTTTGAAATTTTAATTAATTCATTCCACATCTCAATAAACTTGTGTACACTACTAGTCTGTGTCAACAACCTGAGAAAGAGGAACCCTTAACTTTGATAAATTTTAATGGGTTTCTGTCAAAGGTATGGAAAAGTTGTCAACTGATAAAATTTTTATCATAATATAAGAAACATTTTATCAGTTAACACATTTTCTATATCTTGCACAGGAAGGAGATCTATGGGATCAAACTTAACAGTGTGGGGACCCTTTTATTTCAGGTGGGATGAGGAAGGGGCGTGTCAACTGGTAATATATATTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGATTCGATATTCCAGACTTG</pcr_primer_p1>
		<pcr_primer_p2>GATGAATCTGAAAAATGATGAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAAGATTCGATATTCCAGACTTGATTAAATTTGTGAATGAGTGGAAATCAGGAGAAGGATTCCAGAAGCTGGAGTACCTGAAAATCGAGGTACTCACGGATTACATTCCCCCGACGCAAGTTCTTCGTGGAGTTATGGAAAAACGTATTGATCGAAGCAAGAAAAGGCTGGCGCACACTTTGCCCAAAGTGTATGTTCATTTTTTAATGTATTTGAAAATATGTATCTTCATCATTTTTCAGATTCATC</canonical_amplicon>
		<polymorphic_amplicon>TAAGATTCGATATTCCAGACTTGATTAAATTTGTGAATGAGTGGAAATCAGGAGAAGGATTCCAGAAGCTGGAGTACCTGAAAATCGAGGTACTCACGGATTACATTCCCCCGACGCAAGTTCTTCGTGGAGTTATGGAAAAACGTATTGATCGAAGCAAGAAAAGGCTGGCGCACACTTTGCCCAAAGTGTAWGTTCATTTTTTAATGTATTTGAAAATATGTATCTTCATCATTTTTCAGATTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35514</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>378320</contig_pos>
        <strand>+</strand>
        <context>CTGGATCCCG[A/G]ATCAAATGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGAACTGATCGAGTTTCAAAGATTCTGCCTCATACATTCTGGATCCCG</left_flank>
        <right_flank>ATCAAATGGTTCTGTTGTCGTGGTTACTGTCATATCAAGCCTCTTCAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTCTCTTCCTCTGTCACATCCCATACTCCAAAACTGAACGTACTGTTTTGAATCAGAATGGATGCTACACGATTGTCTGATTCTCTAACGACATAGGTGGGGCTTATGATTGGTTCCGTGTTTGGTTTTTCCTTATCATCGATGAATCTGAAAAATGATGAAGATACATATTTTCAAATACATTAAAAAATGAACATACACTTTGGGCAAAGTGTGCGCCAGCCTTTTCTTGCTTCGATCAATACGTTTTTCCATAACTCCACGAAGAACTTGCGTCGGGGGAATTTAATCCGTGAGTACCTCGATTTTCAGGTACTCCAGCTTCTGGAATCCTTCTCCTGATTTCCACTCATTCACAAATTTAATCAAGTCTGGAATATCGAATCTTAAGATTTTCAAAAATGCTTGCCTTCCTTGAAAATGACGTAATACTTCAGGAACATTGTGTTCGAACTGATCGAGTTTCAAAGATTCTGCCTCATACATTCTGGATCCCGGATCAAATGGTTCTGTTGTCGTGGTTACTGTCATATCAAGCCTCTTCAAAATATGAAATGAGAAAAGGAAGTTTTCAAGATTTCGCATTCTAAAAGAAGCTATGGATGGGTCTGCGATGGTCCGCGATGGCCCGCCAGGTCCCTGGTTATATCATAATGCCCGTTTTTATTATATCTTGAAAAAATGCTCCATTTTTCAGTATGTTTTTTATCCAGAATTTTTATCTTTTTCTTTCTGGAATGTTCGAGTTTTTTCAGGAACCACCGCTCATCGGCAAACACAACGAGATGACGTAATCAAAGAAAAATAATGATGTGGCTGGAAGAGAGCTTCTGTTTATTTTAATGTGGTGTTGCGGTTAGTTCAATAATTAGGACAGTTATTTCTTCGCCGTCCGTATTTTTCAGATTAATCCACAACAATGAAGACACATTGTCAAACGATGAATCGAATACGAGTGTTAATACCAAATAATTGTCGGGTTGTAGTGGTGGTTTGCT</canonical>
            <polymorphic>ATGTCTCTTCCTCTGTCACATCCCATACTCCAAAACTGAACGTACTGTTTTGAATCAGAATGGATGCTACACGATTGTCTGATTCTCTAACGACATAGGTGGGGCTTATGATTGGTTCCGTGTTTGGTTTTTCCTTATCATCGATGAATCTGAAAAATGATGAAGATACATATTTTCAAATACATTAAAAAATGAACATACACTTTGGGCAAAGTGTGCGCCAGCCTTTTCTTGCTTCGATCAATACGTTTTTCCATAACTCCACGAAGAACTTGCGTCGGGGGAATTTAATCCGTGAGTACCTCGATTTTCAGGTACTCCAGCTTCTGGAATCCTTCTCCTGATTTCCACTCATTCACAAATTTAATCAAGTCTGGAATATCGAATCTTAAGATTTTCAAAAATGCTTGCCTTCCTTGAAAATGACGTAATACTTCAGGAACATTGTGTTCGAACTGATCGAGTTTCAAAGATTCTGCCTCATACATTCTGGATCCCGRATCAAATGGTTCTGTTGTCGTGGTTACTGTCATATCAAGCCTCTTCAAAATATGAAATGAGAAAAGGAAGTTTTCAAGATTTCGCATTCTAAAAGAAGCTATGGATGGGTCTGCGATGGTCCGCGATGGCCCGCCAGGTCCCTGGTTATATCATAATGCCCGTTTTTATTATATCTTGAAAAAATGCTCCATTTTTCAGTATGTTTTTTATCCAGAATTTTTATCTTTTTCTTTCTGGAATGTTCGAGTTTTTTCAGGAACCACCGCTCATCGGCAAACACAACGAGATGACGTAATCAAAGAAAAATAATGATGTGGCTGGAAGAGAGCTTCTGTTTATTTTAATGTGGTGTTGCGGTTAGTTCAATAATTAGGACAGTTATTTCTTCGCCGTCCGTATTTTTCAGATTAATCCACAACAATGAAGACACATTGTCAAACGATGAATCGAATACGAGTGTTAATACCAAATAATTGTCGGGTTGTAGTGGTGGTTTGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>501 238 219 35 7</canonical_bands>
                <polymorphic_bands>508 238 219 35</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>497 358 138 7</canonical_bands>
                <polymorphic_bands>635 358 7</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACGTAATACTTCAGGAACATTG</pcr_primer_p1>
		<pcr_primer_p2>TATAATAAAAACGGGCATTATGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GACGTAATACTTCAGGAACATTGTGTTCGAACTGATCGAGTTTCAAAGATTCTGCCTCATACATTCTGGATCCCGGATCAAATGGTTCTGTTGTCGTGGTTACTGTCATATCAAGCCTCTTCAAAATATGAAATGAGAAAAGGAAGTTTTCAAGATTTCGCATTCTAAAAGAAGCTATGGATGGGTCTGCGATGGTCCGCGATGGCCCGCCAGGTCCCTGGTTATATCATAATGCCCGTTTTTATTATA</canonical_amplicon>
		<polymorphic_amplicon>GACGTAATACTTCAGGAACATTGTGTTCGAACTGATCGAGTTTCAAAGATTCTGCCTCATACATTCTGGATCCCGRATCAAATGGTTCTGTTGTCGTGGTTACTGTCATATCAAGCCTCTTCAAAATATGAAATGAGAAAAGGAAGTTTTCAAGATTTCGCATTCTAAAAGAAGCTATGGATGGGTCTGCGATGGTCCGCGATGGCCCGCCAGGTCCCTGGTTATATCATAATGCCCGTTTTTATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35515</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>459500</contig_pos>
        <strand>+</strand>
        <context>AAAATCTGAA[A/G]ATCCATGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCAAATTCTAAAAATTCTGAAACTTTAAGGAATTCCAAAAAATCTGAA</left_flank>
        <right_flank>ATCCATGAAAATTTGAAAAATATGGAATTCTGAGATTCGGAAAATCTTAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCTTGCTTAAAACATCTTAAAAATCGATTTTCCAGCGAACAAGAACCACCACAATCACTGCTCAAGCTAAATTTCATTGCTGACGAGGAGAAAGGATGGATGTTGGTTGTGAGAGCGTTGATCTATACGGTAGGTTGCTACAGTAACCTAGGAATTTTAGGAATTTTGAAAAAAAAATGGAAATCCCGAAATTGTGAATTTGAAGCATCCTGAGCTTCTGGAAATTCTGAAAATTCGATTTTTTTTGAAAATTCAAGTTCTTAGAATTCGTATTTTCACAATTCTGCAAAATTCAACTCTTAAATTTCTGAAAATTCTGAATAATCTGGAATCGTTAGATTTGGAAAATCTGAAATTCTGCCATTCTGAAATTTCGAAATTTTGAATTCTGAAATTTCTGAAAATTTTCAAAAAATCCAGGATAATTTGAAAAAAAAATTTTCAAATTTTCAAATTCTAAAAATTCTGAAACTTTAAGGAATTCCAAAAAATCTGAAGATCCATGAAAATTTGAAAAATATGGAATTCTGAGATTCGGAAAATCTTAAATTTTGTGATTCTGGATTTCTACAGTTTCCAAATTCAAAGATTCTGAAAATTTTGGAAAATCAAGGATAATTTGATAATGTCTTTGGTCTGAAAATTTTGAAATTCTCAAATTTTGAAAATTCTGAAATTTTAGGGAATTCCGATTTCTTTAAAAAAGGATTTCTAGCATTTCTAGGCTTAAAACTCTTGAAAATTTAAGTTTTTTTAAATTTAAGTTTTTTTTCAAAAACGCCCAATCTTTGATTTTCAAACCTATACGGTAGACTACAGTGATCCACGAATTTTCAAAATTTTGAAAAAAAAGTTAAATTCTGTAGTTTCGAGGTTCTGAAATTTCAGAAAATTCTCTCCTTGAAACTGCTGAAAATGTCAATTTCTAGCTTTGAAAATATTTAAATTTTCAAGATTCCAAAAATTATAGAAATTCTGAAAATTCGATTTTTAACATT</canonical>
            <polymorphic>TTCCTTGCTTAAAACATCTTAAAAATCGATTTTCCAGCGAACAAGAACCACCACAATCACTGCTCAAGCTAAATTTCATTGCTGACGAGGAGAAAGGATGGATGTTGGTTGTGAGAGCGTTGATCTATACGGTAGGTTGCTACAGTAACCTAGGAATTTTAGGAATTTTGAAAAAAAAATGGAAATCCCGAAATTGTGAATTTGAAGCATCCTGAGCTTCTGGAAATTCTGAAAATTCGATTTTTTTTGAAAATTCAAGTTCTTAGAATTCGTATTTTCACAATTCTGCAAAATTCAACTCTTAAATTTCTGAAAATTCTGAATAATCTGGAATCGTTAGATTTGGAAAATCTGAAATTCTGCCATTCTGAAATTTCGAAATTTTGAATTCTGAAATTTCTGAAAATTTTCAAAAAATCCAGGATAATTTGAAAAAAAAATTTTCAAATTTTCAAATTCTAAAAATTCTGAAACTTTAAGGAATTCCAAAAAATCTGAARATCCATGAAAATTTGAAAAATATGGAATTCTGAGATTCGGAAAATCTTAAATTTTGTGATTCTGGATTTCTACAGTTTCCAAATTCAAAGATTCTGAAAATTTTGGAAAATCAAGGATAATTTGATAATGTCTTTGGTCTGAAAATTTTGAAATTCTCAAATTTTGAAAATTCTGAAATTTTAGGGAATTCCGATTTCTTTAAAAAAGGATTTCTAGCATTTCTAGGCTTAAAACTCTTGAAAATTTAAGTTTTTTTAAATTTAAGTTTTTTTTCAAAAACGCCCAATCTTTGATTTTCAAACCTATACGGTAGACTACAGTGATCCACGAATTTTCAAAATTTTGAAAAAAAAGTTAAATTCTGTAGTTTCGAGGTTCTGAAATTTCAGAAAATTCTCTCCTTGAAACTGCTGAAAATGTCAATTTCTAGCTTTGAAAATATTTAAATTTTCAAGATTCCAAAAATTATAGAAATTCTGAAAATTCGATTTTTAACATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>378 323 178 121</canonical_bands>
                <polymorphic_bands>701 178 121</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCTTCTGGAAATTCTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTTGAATTTGGAAACTGTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>376</pcr_amplicon_size>
		<canonical_amplicon>AGCTTCTGGAAATTCTGAAAATTCGATTTTTTTTGAAAATTCAAGTTCTTAGAATTCGTATTTTCACAATTCTGCAAAATTCAACTCTTAAATTTCTGAAAATTCTGAATAATCTGGAATCGTTAGATTTGGAAAATCTGAAATTCTGCCATTCTGAAATTTCGAAATTTTGAATTCTGAAATTTCTGAAAATTTTCAAAAAATCCAGGATAATTTGAAAAAAAAATTTTCAAATTTTCAAATTCTAAAAATTCTGAAACTTTAAGGAATTCCAAAAAATCTGAAGATCCATGAAAATTTGAAAAATATGGAATTCTGAGATTCGGAAAATCTTAAATTTTGTGATTCTGGATTTCTACAGTTTCCAAATTCAAAG</canonical_amplicon>
		<polymorphic_amplicon>AGCTTCTGGAAATTCTGAAAATTCGATTTTTTTTGAAAATTCAAGTTCTTAGAATTCGTATTTTCACAATTCTGCAAAATTCAACTCTTAAATTTCTGAAAATTCTGAATAATCTGGAATCGTTAGATTTGGAAAATCTGAAATTCTGCCATTCTGAAATTTCGAAATTTTGAATTCTGAAATTTCTGAAAATTTTCAAAAAATCCAGGATAATTTGAAAAAAAAATTTTCAAATTTTCAAATTCTAAAAATTCTGAAACTTTAAGGAATTCCAAAAAATCTGAARATCCATGAAAATTTGAAAAATATGGAATTCTGAGATTCGGAAAATCTTAAATTTTGTGATTCTGGATTTCTACAGTTTCCAAATTCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35516</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>459511</contig_pos>
        <strand>+</strand>
        <context>ATCCATGAAA[A/T]TTTGAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAATTCTGAAACTTTAAGGAATTCCAAAAAATCTGAAGATCCATGAAA</left_flank>
        <right_flank>TTTGAAAAATATGGAATTCTGAGATTCGGAAAATCTTAAATTTTGTGATT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACATCTTAAAAATCGATTTTCCAGCGAACAAGAACCACCACAATCACTGCTCAAGCTAAATTTCATTGCTGACGAGGAGAAAGGATGGATGTTGGTTGTGAGAGCGTTGATCTATACGGTAGGTTGCTACAGTAACCTAGGAATTTTAGGAATTTTGAAAAAAAAATGGAAATCCCGAAATTGTGAATTTGAAGCATCCTGAGCTTCTGGAAATTCTGAAAATTCGATTTTTTTTGAAAATTCAAGTTCTTAGAATTCGTATTTTCACAATTCTGCAAAATTCAACTCTTAAATTTCTGAAAATTCTGAATAATCTGGAATCGTTAGATTTGGAAAATCTGAAATTCTGCCATTCTGAAATTTCGAAATTTTGAATTCTGAAATTTCTGAAAATTTTCAAAAAATCCAGGATAATTTGAAAAAAAAATTTTCAAATTTTCAAATTCTAAAAATTCTGAAACTTTAAGGAATTCCAAAAAATCTGAAGATCCATGAAAATTTGAAAAATATGGAATTCTGAGATTCGGAAAATCTTAAATTTTGTGATTCTGGATTTCTACAGTTTCCAAATTCAAAGATTCTGAAAATTTTGGAAAATCAAGGATAATTTGATAATGTCTTTGGTCTGAAAATTTTGAAATTCTCAAATTTTGAAAATTCTGAAATTTTAGGGAATTCCGATTTCTTTAAAAAAGGATTTCTAGCATTTCTAGGCTTAAAACTCTTGAAAATTTAAGTTTTTTTAAATTTAAGTTTTTTTTCAAAAACGCCCAATCTTTGATTTTCAAACCTATACGGTAGACTACAGTGATCCACGAATTTTCAAAATTTTGAAAAAAAAGTTAAATTCTGTAGTTTCGAGGTTCTGAAATTTCAGAAAATTCTCTCCTTGAAACTGCTGAAAATGTCAATTTCTAGCTTTGAAAATATTTAAATTTTCAAGATTCCAAAAATTATAGAAATTCTGAAAATTCGATTTTTAACATTCTAGGCTCAAA</canonical>
            <polymorphic>AAACATCTTAAAAATCGATTTTCCAGCGAACAAGAACCACCACAATCACTGCTCAAGCTAAATTTCATTGCTGACGAGGAGAAAGGATGGATGTTGGTTGTGAGAGCGTTGATCTATACGGTAGGTTGCTACAGTAACCTAGGAATTTTAGGAATTTTGAAAAAAAAATGGAAATCCCGAAATTGTGAATTTGAAGCATCCTGAGCTTCTGGAAATTCTGAAAATTCGATTTTTTTTGAAAATTCAAGTTCTTAGAATTCGTATTTTCACAATTCTGCAAAATTCAACTCTTAAATTTCTGAAAATTCTGAATAATCTGGAATCGTTAGATTTGGAAAATCTGAAATTCTGCCATTCTGAAATTTCGAAATTTTGAATTCTGAAATTTCTGAAAATTTTCAAAAAATCCAGGATAATTTGAAAAAAAAATTTTCAAATTTTCAAATTCTAAAAATTCTGAAACTTTAAGGAATTCCAAAAAATCTGAAGATCCATGAAAWTTTGAAAAATATGGAATTCTGAGATTCGGAAAATCTTAAATTTTGTGATTCTGGATTTCTACAGTTTCCAAATTCAAAGATTCTGAAAATTTTGGAAAATCAAGGATAATTTGATAATGTCTTTGGTCTGAAAATTTTGAAATTCTCAAATTTTGAAAATTCTGAAATTTTAGGGAATTCCGATTTCTTTAAAAAAGGATTTCTAGCATTTCTAGGCTTAAAACTCTTGAAAATTTAAGTTTTTTTAAATTTAAGTTTTTTTTCAAAAACGCCCAATCTTTGATTTTCAAACCTATACGGTAGACTACAGTGATCCACGAATTTTCAAAATTTTGAAAAAAAAGTTAAATTCTGTAGTTTCGAGGTTCTGAAATTTCAGAAAATTCTCTCCTTGAAACTGCTGAAAATGTCAATTTCTAGCTTTGAAAATATTTAAATTTTCAAGATTCCAAAAATTATAGAAATTCTGAAAATTCGATTTTTAACATTCTAGGCTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>83 72 60 56 54 45 41 35 34 32 29 28 27 26 25 24 24 19 18 18 17 16 16 16 15 13 10 10 10 10 9 9 9 9 9 9 8 8 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>83 72 60 56 54 45 44 41 35 34 32 29 27 26 25 24 24 19 18 18 17 16 16 15 13 10 10 10 10 9 9 9 9 9 9 8 8 8 8 8 8 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>83 72 60 56 41 32 30 29 28 28 26 25 24 24 24 21 20 19 18 18 18 17 16 16 16 15 15 13 13 10 10 10 10 10 9 9 9 9 9 9 9 8 8 8 8 8 8 8 7 7</canonical_bands>
                <polymorphic_bands>83 72 60 56 44 41 32 30 29 28 26 25 24 24 24 21 20 19 18 18 18 17 16 16 15 15 13 13 10 10 10 10 10 9 9 9 9 9 9 9 8 8 8 8 8 8 8 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCTTCTGGAAATTCTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTTGAATTTGGAAACTGTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>376</pcr_amplicon_size>
		<canonical_amplicon>AGCTTCTGGAAATTCTGAAAATTCGATTTTTTTTGAAAATTCAAGTTCTTAGAATTCGTATTTTCACAATTCTGCAAAATTCAACTCTTAAATTTCTGAAAATTCTGAATAATCTGGAATCGTTAGATTTGGAAAATCTGAAATTCTGCCATTCTGAAATTTCGAAATTTTGAATTCTGAAATTTCTGAAAATTTTCAAAAAATCCAGGATAATTTGAAAAAAAAATTTTCAAATTTTCAAATTCTAAAAATTCTGAAACTTTAAGGAATTCCAAAAAATCTGAAGATCCATGAAAATTTGAAAAATATGGAATTCTGAGATTCGGAAAATCTTAAATTTTGTGATTCTGGATTTCTACAGTTTCCAAATTCAAAG</canonical_amplicon>
		<polymorphic_amplicon>AGCTTCTGGAAATTCTGAAAATTCGATTTTTTTTGAAAATTCAAGTTCTTAGAATTCGTATTTTCACAATTCTGCAAAATTCAACTCTTAAATTTCTGAAAATTCTGAATAATCTGGAATCGTTAGATTTGGAAAATCTGAAATTCTGCCATTCTGAAATTTCGAAATTTTGAATTCTGAAATTTCTGAAAATTTTCAAAAAATCCAGGATAATTTGAAAAAAAAATTTTCAAATTTTCAAATTCTAAAAATTCTGAAACTTTAAGGAATTCCAAAAAATCTGAAGATCCATGAAAWTTTGAAAAATATGGAATTCTGAGATTCGGAAAATCTTAAATTTTGTGATTCTGGATTTCTACAGTTTCCAAATTCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35517</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>459522</contig_pos>
        <strand>+</strand>
        <context>TTTGAAAAAT[A/C]TGGAATTCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACTTTAAGGAATTCCAAAAAATCTGAAGATCCATGAAAATTTGAAAAAT</left_flank>
        <right_flank>TGGAATTCTGAGATTCGGAAAATCTTAAATTTTGTGATTCTGGATTTCTA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCGATTTTCCAGCGAACAAGAACCACCACAATCACTGCTCAAGCTAAATTTCATTGCTGACGAGGAGAAAGGATGGATGTTGGTTGTGAGAGCGTTGATCTATACGGTAGGTTGCTACAGTAACCTAGGAATTTTAGGAATTTTGAAAAAAAAATGGAAATCCCGAAATTGTGAATTTGAAGCATCCTGAGCTTCTGGAAATTCTGAAAATTCGATTTTTTTTGAAAATTCAAGTTCTTAGAATTCGTATTTTCACAATTCTGCAAAATTCAACTCTTAAATTTCTGAAAATTCTGAATAATCTGGAATCGTTAGATTTGGAAAATCTGAAATTCTGCCATTCTGAAATTTCGAAATTTTGAATTCTGAAATTTCTGAAAATTTTCAAAAAATCCAGGATAATTTGAAAAAAAAATTTTCAAATTTTCAAATTCTAAAAATTCTGAAACTTTAAGGAATTCCAAAAAATCTGAAGATCCATGAAAATTTGAAAAATATGGAATTCTGAGATTCGGAAAATCTTAAATTTTGTGATTCTGGATTTCTACAGTTTCCAAATTCAAAGATTCTGAAAATTTTGGAAAATCAAGGATAATTTGATAATGTCTTTGGTCTGAAAATTTTGAAATTCTCAAATTTTGAAAATTCTGAAATTTTAGGGAATTCCGATTTCTTTAAAAAAGGATTTCTAGCATTTCTAGGCTTAAAACTCTTGAAAATTTAAGTTTTTTTAAATTTAAGTTTTTTTTCAAAAACGCCCAATCTTTGATTTTCAAACCTATACGGTAGACTACAGTGATCCACGAATTTTCAAAATTTTGAAAAAAAAGTTAAATTCTGTAGTTTCGAGGTTCTGAAATTTCAGAAAATTCTCTCCTTGAAACTGCTGAAAATGTCAATTTCTAGCTTTGAAAATATTTAAATTTTCAAGATTCCAAAAATTATAGAAATTCTGAAAATTCGATTTTTAACATTCTAGGCTCAAAACTGCTCAAAA</canonical>
            <polymorphic>AAATCGATTTTCCAGCGAACAAGAACCACCACAATCACTGCTCAAGCTAAATTTCATTGCTGACGAGGAGAAAGGATGGATGTTGGTTGTGAGAGCGTTGATCTATACGGTAGGTTGCTACAGTAACCTAGGAATTTTAGGAATTTTGAAAAAAAAATGGAAATCCCGAAATTGTGAATTTGAAGCATCCTGAGCTTCTGGAAATTCTGAAAATTCGATTTTTTTTGAAAATTCAAGTTCTTAGAATTCGTATTTTCACAATTCTGCAAAATTCAACTCTTAAATTTCTGAAAATTCTGAATAATCTGGAATCGTTAGATTTGGAAAATCTGAAATTCTGCCATTCTGAAATTTCGAAATTTTGAATTCTGAAATTTCTGAAAATTTTCAAAAAATCCAGGATAATTTGAAAAAAAAATTTTCAAATTTTCAAATTCTAAAAATTCTGAAACTTTAAGGAATTCCAAAAAATCTGAAGATCCATGAAAATTTGAAAAATMTGGAATTCTGAGATTCGGAAAATCTTAAATTTTGTGATTCTGGATTTCTACAGTTTCCAAATTCAAAGATTCTGAAAATTTTGGAAAATCAAGGATAATTTGATAATGTCTTTGGTCTGAAAATTTTGAAATTCTCAAATTTTGAAAATTCTGAAATTTTAGGGAATTCCGATTTCTTTAAAAAAGGATTTCTAGCATTTCTAGGCTTAAAACTCTTGAAAATTTAAGTTTTTTTAAATTTAAGTTTTTTTTCAAAAACGCCCAATCTTTGATTTTCAAACCTATACGGTAGACTACAGTGATCCACGAATTTTCAAAATTTTGAAAAAAAAGTTAAATTCTGTAGTTTCGAGGTTCTGAAATTTCAGAAAATTCTCTCCTTGAAACTGCTGAAAATGTCAATTTCTAGCTTTGAAAATATTTAAATTTTCAAGATTCCAAAAATTATAGAAATTCTGAAAATTCGATTTTTAACATTCTAGGCTCAAAACTGCTCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTTCTGGAAATTCTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTTGAATTTGGAAACTGTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>376</pcr_amplicon_size>
		<canonical_amplicon>AGCTTCTGGAAATTCTGAAAATTCGATTTTTTTTGAAAATTCAAGTTCTTAGAATTCGTATTTTCACAATTCTGCAAAATTCAACTCTTAAATTTCTGAAAATTCTGAATAATCTGGAATCGTTAGATTTGGAAAATCTGAAATTCTGCCATTCTGAAATTTCGAAATTTTGAATTCTGAAATTTCTGAAAATTTTCAAAAAATCCAGGATAATTTGAAAAAAAAATTTTCAAATTTTCAAATTCTAAAAATTCTGAAACTTTAAGGAATTCCAAAAAATCTGAAGATCCATGAAAATTTGAAAAATATGGAATTCTGAGATTCGGAAAATCTTAAATTTTGTGATTCTGGATTTCTACAGTTTCCAAATTCAAAG</canonical_amplicon>
		<polymorphic_amplicon>AGCTTCTGGAAATTCTGAAAATTCGATTTTTTTTGAAAATTCAAGTTCTTAGAATTCGTATTTTCACAATTCTGCAAAATTCAACTCTTAAATTTCTGAAAATTCTGAATAATCTGGAATCGTTAGATTTGGAAAATCTGAAATTCTGCCATTCTGAAATTTCGAAATTTTGAATTCTGAAATTTCTGAAAATTTTCAAAAAATCCAGGATAATTTGAAAAAAAAATTTTCAAATTTTCAAATTCTAAAAATTCTGAAACTTTAAGGAATTCCAAAAAATCTGAAGATCCATGAAAATTTGAAAAATMTGGAATTCTGAGATTCGGAAAATCTTAAATTTTGTGATTCTGGATTTCTACAGTTTCCAAATTCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35518</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>459567</contig_pos>
        <strand>+</strand>
        <context>TGATTCTGGA[A/T]TTCTACAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATATGGAATTCTGAGATTCGGAAAATCTTAAATTTTGTGATTCTGGA</left_flank>
        <right_flank>TTCTACAGTTTCCAAATTCAAAGATTCTGAAAATTTTGGAAAATCAAGGA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTAAATTTCATTGCTGACGAGGAGAAAGGATGGATGTTGGTTGTGAGAGCGTTGATCTATACGGTAGGTTGCTACAGTAACCTAGGAATTTTAGGAATTTTGAAAAAAAAATGGAAATCCCGAAATTGTGAATTTGAAGCATCCTGAGCTTCTGGAAATTCTGAAAATTCGATTTTTTTTGAAAATTCAAGTTCTTAGAATTCGTATTTTCACAATTCTGCAAAATTCAACTCTTAAATTTCTGAAAATTCTGAATAATCTGGAATCGTTAGATTTGGAAAATCTGAAATTCTGCCATTCTGAAATTTCGAAATTTTGAATTCTGAAATTTCTGAAAATTTTCAAAAAATCCAGGATAATTTGAAAAAAAAATTTTCAAATTTTCAAATTCTAAAAATTCTGAAACTTTAAGGAATTCCAAAAAATCTGAAGATCCATGAAAATTTGAAAAATATGGAATTCTGAGATTCGGAAAATCTTAAATTTTGTGATTCTGGATTTCTACAGTTTCCAAATTCAAAGATTCTGAAAATTTTGGAAAATCAAGGATAATTTGATAATGTCTTTGGTCTGAAAATTTTGAAATTCTCAAATTTTGAAAATTCTGAAATTTTAGGGAATTCCGATTTCTTTAAAAAAGGATTTCTAGCATTTCTAGGCTTAAAACTCTTGAAAATTTAAGTTTTTTTAAATTTAAGTTTTTTTTCAAAAACGCCCAATCTTTGATTTTCAAACCTATACGGTAGACTACAGTGATCCACGAATTTTCAAAATTTTGAAAAAAAAGTTAAATTCTGTAGTTTCGAGGTTCTGAAATTTCAGAAAATTCTCTCCTTGAAACTGCTGAAAATGTCAATTTCTAGCTTTGAAAATATTTAAATTTTCAAGATTCCAAAAATTATAGAAATTCTGAAAATTCGATTTTTAACATTCTAGGCTCAAAACTGCTCAAAATATCAATTTTCAGCCTCAAAATCTATAAATTCCCACGTTTCAGAT</canonical>
            <polymorphic>GCTAAATTTCATTGCTGACGAGGAGAAAGGATGGATGTTGGTTGTGAGAGCGTTGATCTATACGGTAGGTTGCTACAGTAACCTAGGAATTTTAGGAATTTTGAAAAAAAAATGGAAATCCCGAAATTGTGAATTTGAAGCATCCTGAGCTTCTGGAAATTCTGAAAATTCGATTTTTTTTGAAAATTCAAGTTCTTAGAATTCGTATTTTCACAATTCTGCAAAATTCAACTCTTAAATTTCTGAAAATTCTGAATAATCTGGAATCGTTAGATTTGGAAAATCTGAAATTCTGCCATTCTGAAATTTCGAAATTTTGAATTCTGAAATTTCTGAAAATTTTCAAAAAATCCAGGATAATTTGAAAAAAAAATTTTCAAATTTTCAAATTCTAAAAATTCTGAAACTTTAAGGAATTCCAAAAAATCTGAAGATCCATGAAAATTTGAAAAATATGGAATTCTGAGATTCGGAAAATCTTAAATTTTGTGATTCTGGAWTTCTACAGTTTCCAAATTCAAAGATTCTGAAAATTTTGGAAAATCAAGGATAATTTGATAATGTCTTTGGTCTGAAAATTTTGAAATTCTCAAATTTTGAAAATTCTGAAATTTTAGGGAATTCCGATTTCTTTAAAAAAGGATTTCTAGCATTTCTAGGCTTAAAACTCTTGAAAATTTAAGTTTTTTTAAATTTAAGTTTTTTTTCAAAAACGCCCAATCTTTGATTTTCAAACCTATACGGTAGACTACAGTGATCCACGAATTTTCAAAATTTTGAAAAAAAAGTTAAATTCTGTAGTTTCGAGGTTCTGAAATTTCAGAAAATTCTCTCCTTGAAACTGCTGAAAATGTCAATTTCTAGCTTTGAAAATATTTAAATTTTCAAGATTCCAAAAATTATAGAAATTCTGAAAATTCGATTTTTAACATTCTAGGCTCAAAACTGCTCAAAATATCAATTTTCAGCCTCAAAATCTATAAATTCCCACGTTTCAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGCTTCTGGAAATTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>ACATTATCAAATTATCCTTGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>418</pcr_amplicon_size>
		<canonical_amplicon>GAGCTTCTGGAAATTCTGAAAATTCGATTTTTTTTGAAAATTCAAGTTCTTAGAATTCGTATTTTCACAATTCTGCAAAATTCAACTCTTAAATTTCTGAAAATTCTGAATAATCTGGAATCGTTAGATTTGGAAAATCTGAAATTCTGCCATTCTGAAATTTCGAAATTTTGAATTCTGAAATTTCTGAAAATTTTCAAAAAATCCAGGATAATTTGAAAAAAAAATTTTCAAATTTTCAAATTCTAAAAATTCTGAAACTTTAAGGAATTCCAAAAAATCTGAAGATCCATGAAAATTTGAAAAATATGGAATTCTGAGATTCGGAAAATCTTAAATTTTGTGATTCTGGATTTCTACAGTTTCCAAATTCAAAGATTCTGAAAATTTTGGAAAATCAAGGATAATTTGATAATGT</canonical_amplicon>
		<polymorphic_amplicon>GAGCTTCTGGAAATTCTGAAAATTCGATTTTTTTTGAAAATTCAAGTTCTTAGAATTCGTATTTTCACAATTCTGCAAAATTCAACTCTTAAATTTCTGAAAATTCTGAATAATCTGGAATCGTTAGATTTGGAAAATCTGAAATTCTGCCATTCTGAAATTTCGAAATTTTGAATTCTGAAATTTCTGAAAATTTTCAAAAAATCCAGGATAATTTGAAAAAAAAATTTTCAAATTTTCAAATTCTAAAAATTCTGAAACTTTAAGGAATTCCAAAAAATCTGAAGATCCATGAAAATTTGAAAAATATGGAATTCTGAGATTCGGAAAATCTTAAATTTTGTGATTCTGGAWTTCTACAGTTTCCAAATTCAAAGATTCTGAAAATTTTGGAAAATCAAGGATAATTTGATAATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35519</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>459745</contig_pos>
        <strand>+</strand>
        <context>CTCTTGAAAA[C/T]TTAAGTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCTTTAAAAAAGGATTTCTAGCATTTCTAGGCTTAAAACTCTTGAAAA</left_flank>
        <right_flank>TTAAGTTTTTTTAAATTTAAGTTTTTTTTCAAAAACGCCCAATCTTTGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAAAATTCAAGTTCTTAGAATTCGTATTTTCACAATTCTGCAAAATTCAACTCTTAAATTTCTGAAAATTCTGAATAATCTGGAATCGTTAGATTTGGAAAATCTGAAATTCTGCCATTCTGAAATTTCGAAATTTTGAATTCTGAAATTTCTGAAAATTTTCAAAAAATCCAGGATAATTTGAAAAAAAAATTTTCAAATTTTCAAATTCTAAAAATTCTGAAACTTTAAGGAATTCCAAAAAATCTGAAGATCCATGAAAATTTGAAAAATATGGAATTCTGAGATTCGGAAAATCTTAAATTTTGTGATTCTGGATTTCTACAGTTTCCAAATTCAAAGATTCTGAAAATTTTGGAAAATCAAGGATAATTTGATAATGTCTTTGGTCTGAAAATTTTGAAATTCTCAAATTTTGAAAATTCTGAAATTTTAGGGAATTCCGATTTCTTTAAAAAAGGATTTCTAGCATTTCTAGGCTTAAAACTCTTGAAAATTTAAGTTTTTTTAAATTTAAGTTTTTTTTCAAAAACGCCCAATCTTTGATTTTCAAACCTATACGGTAGACTACAGTGATCCACGAATTTTCAAAATTTTGAAAAAAAAGTTAAATTCTGTAGTTTCGAGGTTCTGAAATTTCAGAAAATTCTCTCCTTGAAACTGCTGAAAATGTCAATTTCTAGCTTTGAAAATATTTAAATTTTCAAGATTCCAAAAATTATAGAAATTCTGAAAATTCGATTTTTAACATTCTAGGCTCAAAACTGCTCAAAATATCAATTTTCAGCCTCAAAATCTATAAATTCCCACGTTTCAGATCCCAGAAAACGATCCACTGGGGCCAGCAGTGATATCTCTCTTCCTCGATGAATGCCCTCTTCCCAGCAAAGAATCCGTTCAAACCCTTCTGATTTCTCTGGGTCTCTCATCTGAATTCGTCGAAACGAAACATCTTTCACCGTCGTGGCACAAGAATATGTGCATCGTGTTGGGATCC</canonical>
            <polymorphic>TTTGAAAATTCAAGTTCTTAGAATTCGTATTTTCACAATTCTGCAAAATTCAACTCTTAAATTTCTGAAAATTCTGAATAATCTGGAATCGTTAGATTTGGAAAATCTGAAATTCTGCCATTCTGAAATTTCGAAATTTTGAATTCTGAAATTTCTGAAAATTTTCAAAAAATCCAGGATAATTTGAAAAAAAAATTTTCAAATTTTCAAATTCTAAAAATTCTGAAACTTTAAGGAATTCCAAAAAATCTGAAGATCCATGAAAATTTGAAAAATATGGAATTCTGAGATTCGGAAAATCTTAAATTTTGTGATTCTGGATTTCTACAGTTTCCAAATTCAAAGATTCTGAAAATTTTGGAAAATCAAGGATAATTTGATAATGTCTTTGGTCTGAAAATTTTGAAATTCTCAAATTTTGAAAATTCTGAAATTTTAGGGAATTCCGATTTCTTTAAAAAAGGATTTCTAGCATTTCTAGGCTTAAAACTCTTGAAAAYTTAAGTTTTTTTAAATTTAAGTTTTTTTTCAAAAACGCCCAATCTTTGATTTTCAAACCTATACGGTAGACTACAGTGATCCACGAATTTTCAAAATTTTGAAAAAAAAGTTAAATTCTGTAGTTTCGAGGTTCTGAAATTTCAGAAAATTCTCTCCTTGAAACTGCTGAAAATGTCAATTTCTAGCTTTGAAAATATTTAAATTTTCAAGATTCCAAAAATTATAGAAATTCTGAAAATTCGATTTTTAACATTCTAGGCTCAAAACTGCTCAAAATATCAATTTTCAGCCTCAAAATCTATAAATTCCCACGTTTCAGATCCCAGAAAACGATCCACTGGGGCCAGCAGTGATATCTCTCTTCCTCGATGAATGCCCTCTTCCCAGCAAAGAATCCGTTCAAACCCTTCTGATTTCTCTGGGTCTCTCATCTGAATTCGTCGAAACGAAACATCTTTCACCGTCGTGGCACAAGAATATGTGCATCGTGTTGGGATCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>131 72 67 65 56 54 45 41 34 32 28 27 25 24 24 19 18 17 16 16 16 15 13 10 10 10 10 9 9 9 9 8 8 8 8 8 8 8 7 6</canonical_bands>
                <polymorphic_bands>131 72 72 67 65 54 45 41 34 32 28 27 25 24 24 19 18 17 16 16 15 13 10 10 10 10 9 9 9 9 8 8 8 8 8 8 8 7 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>131 72 65 56 44 41 32 30 28 25 24 24 24 23 21 20 19 18 18 17 16 16 16 15 15 13 13 10 10 10 10 10 9 9 9 9 9 8 8 8 8 8 8 8 7 6</canonical_bands>
                <polymorphic_bands>131 72 72 65 44 41 32 30 28 25 24 24 24 23 21 20 19 18 18 17 16 16 15 15 13 13 10 10 10 10 10 9 9 9 9 9 8 8 8 8 8 8 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTACAGTTTCCAAATTCAAAG</pcr_primer_p1>
		<pcr_primer_p2>CTACCGTATAGGTTTGAAAATCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTCTACAGTTTCCAAATTCAAAGATTCTGAAAATTTTGGAAAATCAAGGATAATTTGATAATGTCTTTGGTCTGAAAATTTTGAAATTCTCAAATTTTGAAAATTCTGAAATTTTAGGGAATTCCGATTTCTTTAAAAAAGGATTTCTAGCATTTCTAGGCTTAAAACTCTTGAAAATTTAAGTTTTTTTAAATTTAAGTTTTTTTTCAAAAACGCCCAATCTTTGATTTTCAAACCTATACGGTAG</canonical_amplicon>
		<polymorphic_amplicon>TTCTACAGTTTCCAAATTCAAAGATTCTGAAAATTTTGGAAAATCAAGGATAATTTGATAATGTCTTTGGTCTGAAAATTTTGAAATTCTCAAATTTTGAAAATTCTGAAATTTTAGGGAATTCCGATTTCTTTAAAAAAGGATTTCTAGCATTTCTAGGCTTAAAACTCTTGAAAAYTTAAGTTTTTTTAAATTTAAGTTTTTTTTCAAAAACGCCCAATCTTTGATTTTCAAACCTATACGGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35520</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>462471</contig_pos>
        <strand>+</strand>
        <context>ACTGCTGCCC[G/T]CTGTGTCGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTTCCAGTGGTTTCTGTCCCGACTGCTGTAACATGATGGACTGCTGCCC</left_flank>
        <right_flank>CTGTGTCGTACGCCAATCGTAGAACGTGTCCCAATGAAAACCAACAACAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAATCATGAGTGAGTTGTTGGCCTGAAAATTTAAAAAAAATGAAATCTAGGTCATGACCAGAAATCCTAAAAGTCCAAAAGATAAAAAAAACAAAATTTCAAAAATTCCAAAACTATTCAAAGTTCAAAATCTAGGGCATGATCTCGAAATCCTTGACAAATTAAAACCTAGGTCATGACCTGAAAATCCTAAAAATACAAAAAATCAGAATCTAGAACGTGACCTAGTTTCGGAAATCCAGGTCACGGCCTAAAAAACCTAGAAACCCAAATCTAGGTCATGGCCTAGAAAATCTAAATCTAGGTCATGACCGAAGAATCCAAATCTAGGCCATGACCTAAAAATCCAAATCTAGGTCATGACCTAGAAATCCCAAATATTGAGATCTAGGTCATGACCTATTTTTTAAATGTTGTTTTAATTTTTTATTACGAAATTCCAATATTTCTTTCCAGTGGTTTCTGTCCCGACTGCTGTAACATGATGGACTGCTGCCCTCTGTGTCGTACGCCAATCGTAGAACGTGTCCCAATGAAAACCAACAACAACAAGTTTGAAGCGTTCCGATCGCCGTCGTTCACCAGCGGATTACAACGAGTGAACAGTCAGCGAAAGAGCATCAGAGCCACGTCGGCGGCGGTTCAGGGAGCTGGGGATACGGTAGGTTGGGGTTCTGGAGCCGACAAATTGGCTTGAAATGAGCAATTTTCATCTGAAAATCGTGAAAAAAGGGTCAATTTTAGCCCAGAATGGTGAAAAATAAGCAATTTTATCTGACAAATTGGCTTAAAATGAAAAATGTTGAGCCCAAAATCGCGTAAAATAAGCAATTTCGAGGCAAAAATAGCGAAAAAATGACCAATTTTGAGCAGGAAATTAAGCTTAAAATGAGCGATTTTAGCCAAAAATCGTGAAAAATGCGTTTTTTGAAATTTGAAAATTCGCCACTAATTCAGACTAATTAAACCCCTAATTACTCTAATTACAGACAATTCGCT</canonical>
            <polymorphic>GCAATCATGAGTGAGTTGTTGGCCTGAAAATTTAAAAAAAATGAAATCTAGGTCATGACCAGAAATCCTAAAAGTCCAAAAGATAAAAAAAACAAAATTTCAAAAATTCCAAAACTATTCAAAGTTCAAAATCTAGGGCATGATCTCGAAATCCTTGACAAATTAAAACCTAGGTCATGACCTGAAAATCCTAAAAATACAAAAAATCAGAATCTAGAACGTGACCTAGTTTCGGAAATCCAGGTCACGGCCTAAAAAACCTAGAAACCCAAATCTAGGTCATGGCCTAGAAAATCTAAATCTAGGTCATGACCGAAGAATCCAAATCTAGGCCATGACCTAAAAATCCAAATCTAGGTCATGACCTAGAAATCCCAAATATTGAGATCTAGGTCATGACCTATTTTTTAAATGTTGTTTTAATTTTTTATTACGAAATTCCAATATTTCTTTCCAGTGGTTTCTGTCCCGACTGCTGTAACATGATGGACTGCTGCCCKCTGTGTCGTACGCCAATCGTAGAACGTGTCCCAATGAAAACCAACAACAACAAGTTTGAAGCGTTCCGATCGCCGTCGTTCACCAGCGGATTACAACGAGTGAACAGTCAGCGAAAGAGCATCAGAGCCACGTCGGCGGCGGTTCAGGGAGCTGGGGATACGGTAGGTTGGGGTTCTGGAGCCGACAAATTGGCTTGAAATGAGCAATTTTCATCTGAAAATCGTGAAAAAAGGGTCAATTTTAGCCCAGAATGGTGAAAAATAAGCAATTTTATCTGACAAATTGGCTTAAAATGAAAAATGTTGAGCCCAAAATCGCGTAAAATAAGCAATTTCGAGGCAAAAATAGCGAAAAAATGACCAATTTTGAGCAGGAAATTAAGCTTAAAATGAGCGATTTTAGCCAAAAATCGTGAAAAATGCGTTTTTTGAAATTTGAAAATTCGCCACTAATTCAGACTAATTAAACCCCTAATTACTCTAATTACAGACAATTCGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATTTCTTTCCAGTGGTTTCT</pcr_primer_p1>
		<pcr_primer_p2>CTCATTTCAAGCCAATTTGT</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>AATATTTCTTTCCAGTGGTTTCTGTCCCGACTGCTGTAACATGATGGACTGCTGCCCTCTGTGTCGTACGCCAATCGTAGAACGTGTCCCAATGAAAACCAACAACAACAAGTTTGAAGCGTTCCGATCGCCGTCGTTCACCAGCGGATTACAACGAGTGAACAGTCAGCGAAAGAGCATCAGAGCCACGTCGGCGGCGGTTCAGGGAGCTGGGGATACGGTAGGTTGGGGTTCTGGAGCCGACAAATTGGCTTGAAATGAG</canonical_amplicon>
		<polymorphic_amplicon>AATATTTCTTTCCAGTGGTTTCTGTCCCGACTGCTGTAACATGATGGACTGCTGCCCKCTGTGTCGTACGCCAATCGTAGAACGTGTCCCAATGAAAACCAACAACAACAAGTTTGAAGCGTTCCGATCGCCGTCGTTCACCAGCGGATTACAACGAGTGAACAGTCAGCGAAAGAGCATCAGAGCCACGTCGGCGGCGGTTCAGGGAGCTGGGGATACGGTAGGTTGGGGTTCTGGAGCCGACAAATTGGCTTGAAATGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35521</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>462532</contig_pos>
        <strand>+</strand>
        <context>CAAGTTTGAA[A/G]CGTTCCGATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCCAATCGTAGAACGTGTCCCAATGAAAACCAACAACAACAAGTTTGAA</left_flank>
        <right_flank>CGTTCCGATCGCCGTCGTTCACCAGCGGATTACAACGAGTGAACAGTCAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATCCTAAAAGTCCAAAAGATAAAAAAAACAAAATTTCAAAAATTCCAAAACTATTCAAAGTTCAAAATCTAGGGCATGATCTCGAAATCCTTGACAAATTAAAACCTAGGTCATGACCTGAAAATCCTAAAAATACAAAAAATCAGAATCTAGAACGTGACCTAGTTTCGGAAATCCAGGTCACGGCCTAAAAAACCTAGAAACCCAAATCTAGGTCATGGCCTAGAAAATCTAAATCTAGGTCATGACCGAAGAATCCAAATCTAGGCCATGACCTAAAAATCCAAATCTAGGTCATGACCTAGAAATCCCAAATATTGAGATCTAGGTCATGACCTATTTTTTAAATGTTGTTTTAATTTTTTATTACGAAATTCCAATATTTCTTTCCAGTGGTTTCTGTCCCGACTGCTGTAACATGATGGACTGCTGCCCTCTGTGTCGTACGCCAATCGTAGAACGTGTCCCAATGAAAACCAACAACAACAAGTTTGAAGCGTTCCGATCGCCGTCGTTCACCAGCGGATTACAACGAGTGAACAGTCAGCGAAAGAGCATCAGAGCCACGTCGGCGGCGGTTCAGGGAGCTGGGGATACGGTAGGTTGGGGTTCTGGAGCCGACAAATTGGCTTGAAATGAGCAATTTTCATCTGAAAATCGTGAAAAAAGGGTCAATTTTAGCCCAGAATGGTGAAAAATAAGCAATTTTATCTGACAAATTGGCTTAAAATGAAAAATGTTGAGCCCAAAATCGCGTAAAATAAGCAATTTCGAGGCAAAAATAGCGAAAAAATGACCAATTTTGAGCAGGAAATTAAGCTTAAAATGAGCGATTTTAGCCAAAAATCGTGAAAAATGCGTTTTTTGAAATTTGAAAATTCGCCACTAATTCAGACTAATTAAACCCCTAATTACTCTAATTACAGACAATTCGCTCCACCAAAGACTCCGCCCCTTCAAGCTCCGCCTCCTCCGCAATTGCTCGTCGCCATACTCA</canonical>
            <polymorphic>GAAATCCTAAAAGTCCAAAAGATAAAAAAAACAAAATTTCAAAAATTCCAAAACTATTCAAAGTTCAAAATCTAGGGCATGATCTCGAAATCCTTGACAAATTAAAACCTAGGTCATGACCTGAAAATCCTAAAAATACAAAAAATCAGAATCTAGAACGTGACCTAGTTTCGGAAATCCAGGTCACGGCCTAAAAAACCTAGAAACCCAAATCTAGGTCATGGCCTAGAAAATCTAAATCTAGGTCATGACCGAAGAATCCAAATCTAGGCCATGACCTAAAAATCCAAATCTAGGTCATGACCTAGAAATCCCAAATATTGAGATCTAGGTCATGACCTATTTTTTAAATGTTGTTTTAATTTTTTATTACGAAATTCCAATATTTCTTTCCAGTGGTTTCTGTCCCGACTGCTGTAACATGATGGACTGCTGCCCTCTGTGTCGTACGCCAATCGTAGAACGTGTCCCAATGAAAACCAACAACAACAAGTTTGAARCGTTCCGATCGCCGTCGTTCACCAGCGGATTACAACGAGTGAACAGTCAGCGAAAGAGCATCAGAGCCACGTCGGCGGCGGTTCAGGGAGCTGGGGATACGGTAGGTTGGGGTTCTGGAGCCGACAAATTGGCTTGAAATGAGCAATTTTCATCTGAAAATCGTGAAAAAAGGGTCAATTTTAGCCCAGAATGGTGAAAAATAAGCAATTTTATCTGACAAATTGGCTTAAAATGAAAAATGTTGAGCCCAAAATCGCGTAAAATAAGCAATTTCGAGGCAAAAATAGCGAAAAAATGACCAATTTTGAGCAGGAAATTAAGCTTAAAATGAGCGATTTTAGCCAAAAATCGTGAAAAATGCGTTTTTTGAAATTTGAAAATTCGCCACTAATTCAGACTAATTAAACCCCTAATTACTCTAATTACAGACAATTCGCTCCACCAAAGACTCCGCCCCTTCAAGCTCCGCCTCCTCCGCAATTGCTCGTCGCCATACTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTGCTGTAACATGATGGAC</pcr_primer_p1>
		<pcr_primer_p2>ATGAAAATTGCTCATTTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GACTGCTGTAACATGATGGACTGCTGCCCTCTGTGTCGTACGCCAATCGTAGAACGTGTCCCAATGAAAACCAACAACAACAAGTTTGAAGCGTTCCGATCGCCGTCGTTCACCAGCGGATTACAACGAGTGAACAGTCAGCGAAAGAGCATCAGAGCCACGTCGGCGGCGGTTCAGGGAGCTGGGGATACGGTAGGTTGGGGTTCTGGAGCCGACAAATTGGCTTGAAATGAGCAATTTTCAT</canonical_amplicon>
		<polymorphic_amplicon>GACTGCTGTAACATGATGGACTGCTGCCCTCTGTGTCGTACGCCAATCGTAGAACGTGTCCCAATGAAAACCAACAACAACAAGTTTGAARCGTTCCGATCGCCGTCGTTCACCAGCGGATTACAACGAGTGAACAGTCAGCGAAAGAGCATCAGAGCCACGTCGGCGGCGGTTCAGGGAGCTGGGGATACGGTAGGTTGGGGTTCTGGAGCCGACAAATTGGCTTGAAATGAGCAATTTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35522</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>565763</contig_pos>
        <strand>+</strand>
        <context>AAAAAAACTG[C/T]AAAAGTGGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCATTATCAAAAGATCAGACGCCTCAACAAGCAAAATAGAAAAAAACTG</left_flank>
        <right_flank>AAAAGTGGCAACAACACAGATAAGCCGAAACGGCAACACACAGGAGAGGT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGAAGACGTGCCGCGTAAAAAGGATAAATTCTGATTCGAAAAGTTCAGAAATTCAAGATTTTTTGAATTCGGAAAAGTTCTGGATTCTTGAACCCGCCGATGGTCGGTGTCAGAATTCTGGAAAAGAATCAAGATACATAGGATCAGATGACGTGGCAAGTTCCGAATTTCAGGATTTTTTGAATTCTGAGTCCCGAAACCCATTTACGGAGTCAGAATTCCGGAGAAGCATAGAATTGCTGAGTCTAGGATTTACAAGATTCAGAATCCGAAAATCGAAAAGTCAGGAACTCATTTTGAAGCTGAAAATCTAGACTTCGAAATTTGAATTTCTAGAAGATGCTGAAATTCGGAATTTTCAATTTTTTTTAGAAAATCGGAAATTTCAAATTTCAAGCTTTGGATTGTAAACATCCGGATCCTGAATTCTTCGATTCTAGAATCCTAATCATTATCAAAAGATCAGACGCCTCAACAAGCAAAATAGAAAAAAACTGCAAAAGTGGCAACAACACAGATAAGCCGAAACGGCAACACACAGGAGAGGTCTACGGATCACGTATATCGGAAGAAGAAGAAGAAGGAAAAAAAGATGGTGTGAGAAAAGAAGAAGAAGAAGCGATTGGCAGTATAGATACACATACACAGCAGCAGCAGCGCGGCAGGGATAGTCCAGGCAGGATTCGATGCGGAAAACCCGATGGAGAGGGAGAATCTGGATTTCTGAAGAAGAAGCTGACGTCTTCTACTCCCCTCCAGCTGCGGCAGGCGACGGGGTTTAGTACACAGAAGAGGGAGAATTATATGTAAAGCTTGTGGCGTTATGCTTCGTGATTATTCTCCGATATATTCAACATGTGTAATACCTGAATAAAGCGCGGTGGCGGGATCTGGTTAGCCTATCCCCACCGCTGCTGCCTCCTAATCATAAAAGGCATTACGGTCACTCTGGCGATATCCATAAAAAAGCGGCGAACACTTTTTTTTGGGAAGTGTGG</canonical>
            <polymorphic>CCAGAAGACGTGCCGCGTAAAAAGGATAAATTCTGATTCGAAAAGTTCAGAAATTCAAGATTTTTTGAATTCGGAAAAGTTCTGGATTCTTGAACCCGCCGATGGTCGGTGTCAGAATTCTGGAAAAGAATCAAGATACATAGGATCAGATGACGTGGCAAGTTCCGAATTTCAGGATTTTTTGAATTCTGAGTCCCGAAACCCATTTACGGAGTCAGAATTCCGGAGAAGCATAGAATTGCTGAGTCTAGGATTTACAAGATTCAGAATCCGAAAATCGAAAAGTCAGGAACTCATTTTGAAGCTGAAAATCTAGACTTCGAAATTTGAATTTCTAGAAGATGCTGAAATTCGGAATTTTCAATTTTTTTTAGAAAATCGGAAATTTCAAATTTCAAGCTTTGGATTGTAAACATCCGGATCCTGAATTCTTCGATTCTAGAATCCTAATCATTATCAAAAGATCAGACGCCTCAACAAGCAAAATAGAAAAAAACTGYAAAAGTGGCAACAACACAGATAAGCCGAAACGGCAACACACAGGAGAGGTCTACGGATCACGTATATCGGAAGAAGAAGAAGAAGGAAAAAAAGATGGTGTGAGAAAAGAAGAAGAAGAAGCGATTGGCAGTATAGATACACATACACAGCAGCAGCAGCGCGGCAGGGATAGTCCAGGCAGGATTCGATGCGGAAAACCCGATGGAGAGGGAGAATCTGGATTTCTGAAGAAGAAGCTGACGTCTTCTACTCCCCTCCAGCTGCGGCAGGCGACGGGGTTTAGTACACAGAAGAGGGAGAATTATATGTAAAGCTTGTGGCGTTATGCTTCGTGATTATTCTCCGATATATTCAACATGTGTAATACCTGAATAAAGCGCGGTGGCGGGATCTGGTTAGCCTATCCCCACCGCTGCTGCCTCCTAATCATAAAAGGCATTACGGTCACTCTGGCGATATCCATAAAAAAGCGGCGAACACTTTTTTTTGGGAAGTGTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>505 344 126 25</canonical_bands>
                <polymorphic_bands>530 344 126</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCCTGAATTCTTCGATTCTA</pcr_primer_p1>
		<pcr_primer_p2>TGCTGCTGTGTATGTGTATCTAT</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>GATCCTGAATTCTTCGATTCTAGAATCCTAATCATTATCAAAAGATCAGACGCCTCAACAAGCAAAATAGAAAAAAACTGCAAAAGTGGCAACAACACAGATAAGCCGAAACGGCAACACACAGGAGAGGTCTACGGATCACGTATATCGGAAGAAGAAGAAGAAGGAAAAAAAGATGGTGTGAGAAAAGAAGAAGAAGAAGCGATTGGCAGTATAGATACACATACACAGCAGCA</canonical_amplicon>
		<polymorphic_amplicon>GATCCTGAATTCTTCGATTCTAGAATCCTAATCATTATCAAAAGATCAGACGCCTCAACAAGCAAAATAGAAAAAAACTGYAAAAGTGGCAACAACACAGATAAGCCGAAACGGCAACACACAGGAGAGGTCTACGGATCACGTATATCGGAAGAAGAAGAAGAAGGAAAAAAAGATGGTGTGAGAAAAGAAGAAGAAGAAGCGATTGGCAGTATAGATACACATACACAGCAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35523</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>582883</contig_pos>
        <strand></strand>
        <context>ATCGACCAAC[A/C]ACTCGATGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGCAACAAACTTCGTCTGAATTGTTTCACCGCTGATCTTATCGACCAAC</left_flank>
        <right_flank>ACTCGATGAGCCATACAAGATCTACAACAACTCGACTGCGCCAACTCAGA</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGGAGGACCACTCCGAATCCATTTCACCTCCCAACATCTGGAATTGGTCTTCCGCGGACCGTTGGCGAATGGACGAGGATTCTTGGCCTTGAAAACCACGACACCGGAGGCCTCGAAGATTTGGAAGGAATGGAAAAAGGTTCCGACCTTCAGCCACGTTGAGGACGTCGACCACGGGTCTTTGGGCAAACCAGCTAACGTCTTCAAGAACAGACTGAAACTTGCGGAGGAATACTACCTTGGACCCTCCTTCCGAGTTTGGGTTGAATCAGGATTCGCCGCTACTGCTGAGTACCTGAATTCGGATAAAGGAAGACTGGCTGTATTGGAGGTAGTCGCTGCAATGCAGATGTTCTACAACTTCTTGTCGACTCAACCAGCGTACATGGAAGCTGCTGTCAACGATGGAAGAGACGCGTTGGTGCGACTCAAGGAGTTTGTGGAATATTGCAACAAACTTCGTCTGAATTGTTTCACCGCTGATCTTATCGACCAACAACTCGATGAGCCATACAAGATCTACAACAACTCGACTGCGCCAACTCAGAGCTACTGGTATCAGCACTCCGCCAACTTTGACCCCAACTCTTGAATTTTTTGTAGAATAAAAATTGTTTGTTAAAATTGTGTGTTTTACTCCACCTAGGCCAGACGGGACACATCCAACAAATGTGGTTGTTTTCCTCGAGGGCGCGTGGTGTACTGGCTAGCGGCTGCCGTTTTGGTGCGAGCGCTCGCGGGTTCGATTCCTCGGTAGTAAAATTGGTTTTTTTCTTTTTTTCTTTCTTTATGAAGTACGAAAAAGGGTTCAAAAGTGATTTAAATTATGAAAACCAAAATTTCATTAGGCGAACAAAAAACAATTTCACTTTTTTCGGCCGCTTCACCTACATACCTTTCCCCTCCTCGAATTCTCTCTTATCATCAATTATCAAAACGTTGCATATGATGTGAATTGTGTGTGTTCCTTTAATCTCCCTTGCGTACCTTTCTCTCCT</canonical>
            <polymorphic>AAGGGAGGACCACTCCGAATCCATTTCACCTCCCAACATCTGGAATTGGTCTTCCGCGGACCGTTGGCGAATGGACGAGGATTCTTGGCCTTGAAAACCACGACACCGGAGGCCTCGAAGATTTGGAAGGAATGGAAAAAGGTTCCGACCTTCAGCCACGTTGAGGACGTCGACCACGGGTCTTTGGGCAAACCAGCTAACGTCTTCAAGAACAGACTGAAACTTGCGGAGGAATACTACCTTGGACCCTCCTTCCGAGTTTGGGTTGAATCAGGATTCGCCGCTACTGCTGAGTACCTGAATTCGGATAAAGGAAGACTGGCTGTATTGGAGGTAGTCGCTGCAATGCAGATGTTCTACAACTTCTTGTCGACTCAACCAGCGTACATGGAAGCTGCTGTCAACGATGGAAGAGACGCGTTGGTGCGACTCAAGGAGTTTGTGGAATATTGCAACAAACTTCGTCTGAATTGTTTCACCGCTGATCTTATCGACCAACMACTCGATGAGCCATACAAGATCTACAACAACTCGACTGCGCCAACTCAGAGCTACTGGTATCAGCACTCCGCCAACTTTGACCCCAACTCTTGAATTTTTTGTAGAATAAAAATTGTTTGTTAAAATTGTGTGTTTTACTCCACCTAGGCCAGACGGGACACATCCAACAAATGTGGTTGTTTTCCTCGAGGGCGCGTGGTGTACTGGCTAGCGGCTGCCGTTTTGGTGCGAGCGCTCGCGGGTTCGATTCCTCGGTAGTAAAATTGGTTTTTTTCTTTTTTTCTTTCTTTATGAAGTACGAAAAAGGGTTCAAAAGTGATTTAAATTATGAAAACCAAAATTTCATTAGGCGAACAAAAAACAATTTCACTTTTTTCGGCCGCTTCACCTACATACCTTTCCCCTCCTCGAATTCTCTCTTATCATCAATTATCAAAACGTTGCATATGATGTGAATTGTGTGTGTTCCTTTAATCTCCCTTGCGTACCTTTCTCTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTGGCTGTATTGGAGGTAGT</pcr_primer_p1>
		<pcr_primer_p2>CTGATACCAGTAGCTCTGAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTGGCTGTATTGGAGGTAGTCGCTGCAATGCAGATGTTCTACAACTTCTTGTCGACTCAACCAGCGTACATGGAAGCTGCTGTCAACGATGGAAGAGACGCGTTGGTGCGACTCAAGGAGTTTGTGGAATATTGCAACAAACTTCGTCTGAATTGTTTCACCGCTGATCTTATCGACCAACAACTCGATGAGCCATACAAGATCTACAACAACTCGACTGCGCCAACTCAGAGCTACTGGTATCAG</canonical_amplicon>
		<polymorphic_amplicon>ACTGGCTGTATTGGAGGTAGTCGCTGCAATGCAGATGTTCTACAACTTCTTGTCGACTCAACCAGCGTACATGGAAGCTGCTGTCAACGATGGAAGAGACGCGTTGGTGCGACTCAAGGAGTTTGTGGAATATTGCAACAAACTTCGTCTGAATTGTTTCACCGCTGATCTTATCGACCAACMACTCGATGAGCCATACAAGATCTACAACAACTCGACTGCGCCAACTCAGAGCTACTGGTATCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35524</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>584498</contig_pos>
        <strand></strand>
        <context>tacttttaaa[A/G]atataaagaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACCACCTCCATTTGGTTGCGTCCTCAGAATTATCTCAGTTACTTTTAAA</left_flank>
        <right_flank>ATATAAAGAAGTTGTCAACTGATAATATGTTTATCATAATATCACAAATA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACACTTCCAAGTGGCATAACTCCTCATGGCCATATTTTACAAAAAACTTGTCAACTACACATATATAGCTCTATTTTGTTTATTATATTCTGAAATTTTCAGACAAATCGAAAAAGTGTGAACCCTTTTCTTTCCACTCTTTGGTCCTGCCCATTAGAGTCGCCATTGAGCCGCTAATAGTCCGCTTACTGTCAATCGTAGATCAAAAATTCCTCTTTTTTTTCAAAACTTTTATCGTTTTTCATGATCACTATCCCATCACCCTGATGAATCAATGTCCTTAATTTTCACTTTCTCTCTTCTTCTAAATACCGTTTAGAAAAAGAGACTATTTGGAGAAGGAGAAGAGAAAGGAAAAGAAGAGATTTCTCGGAAAAAAAGGAAGAAAGTGATATAAATACTAATCTGATCCCCCGGAAAAATGAACAACAATCAAAAATACCGTAAAACCACCTCCATTTGGTTGCGTCCTCAGAATTATCTCAGTTACTTTTAAAAATATAAAGAAGTTGTCAACTGATAATATGTTTATCATAATATCACAAATATTTTATCAGTTGACACCTTTTTGATATCTTGCACAAGAACCGAGATAATTGAGCTAGAACTTGACAACATTGACTTGTATGCTTTGTGTACACAATGTGTAAAAAATCTACAGTAGGAAATTAAGATATTTTGAGGATTTAATTACAAAAAAAAAATAAGGCTTTTCCAGGATGTCAACTACACGATATGGAAATGACCACCCAGCCTTCCTGGGCGCCAACAGGAAGGTTAAACCAGTTCAATGGATTCGCAACACCTCGACCATCGCTACTACCAGCTAATGCTCAAATGGGTGAGAGCTTTTTTATTTATTTTAAATTTCAAAAATTGCTACAGTAAGCAAGAAGTTTGATCAGCTATATAGCTTGTAAGCCCTACCGTAACCATCATAAAAACAGCCCCCCCCCCCCCCTAACTTTGACCACTTTTATCTCGGCTCCTGTAAAAGA</canonical>
            <polymorphic>CCACACTTCCAAGTGGCATAACTCCTCATGGCCATATTTTACAAAAAACTTGTCAACTACACATATATAGCTCTATTTTGTTTATTATATTCTGAAATTTTCAGACAAATCGAAAAAGTGTGAACCCTTTTCTTTCCACTCTTTGGTCCTGCCCATTAGAGTCGCCATTGAGCCGCTAATAGTCCGCTTACTGTCAATCGTAGATCAAAAATTCCTCTTTTTTTTCAAAACTTTTATCGTTTTTCATGATCACTATCCCATCACCCTGATGAATCAATGTCCTTAATTTTCACTTTCTCTCTTCTTCTAAATACCGTTTAGAAAAAGAGACTATTTGGAGAAGGAGAAGAGAAAGGAAAAGAAGAGATTTCTCGGAAAAAAAGGAAGAAAGTGATATAAATACTAATCTGATCCCCCGGAAAAATGAACAACAATCAAAAATACCGTAAAACCACCTCCATTTGGTTGCGTCCTCAGAATTATCTCAGTTACTTTTAAARATATAAAGAAGTTGTCAACTGATAATATGTTTATCATAATATCACAAATATTTTATCAGTTGACACCTTTTTGATATCTTGCACAAGAACCGAGATAATTGAGCTAGAACTTGACAACATTGACTTGTATGCTTTGTGTACACAATGTGTAAAAAATCTACAGTAGGAAATTAAGATATTTTGAGGATTTAATTACAAAAAAAAAATAAGGCTTTTCCAGGATGTCAACTACACGATATGGAAATGACCACCCAGCCTTCCTGGGCGCCAACAGGAAGGTTAAACCAGTTCAATGGATTCGCAACACCTCGACCATCGCTACTACCAGCTAATGCTCAAATGGGTGAGAGCTTTTTTATTTATTTTAAATTTCAAAAATTGCTACAGTAAGCAAGAAGTTTGATCAGCTATATAGCTTGTAAGCCCTACCGTAACCATCATAAAAACAGCCCCCCCCCCCCCCTAACTTTGACCACTTTTATCTCGGCTCCTGTAAAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATACCGTAAAACCACCTC</pcr_primer_p1>
		<pcr_primer_p2>TCCTCAAAATATCTTAATTTCCTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATACCGTAAAACCACCTCCATTTGGTTGCGTCCTCAGAATTATCTCAGTTACTTTTAAAAATATAAAGAAGTTGTCAACTGATAATATGTTTATCATAATATCACAAATATTTTATCAGTTGACACCTTTTTGATATCTTGCACAAGAACCGAGATAATTGAGCTAGAACTTGACAACATTGACTTGTATGCTTTGTGTACACAATGTGTAAAAAATCTACAGTAGGAAATTAAGATATTTTGAGGA</canonical_amplicon>
		<polymorphic_amplicon>AAAATACCGTAAAACCACCTCCATTTGGTTGCGTCCTCAGAATTATCTCAGTTACTTTTAAARATATAAAGAAGTTGTCAACTGATAATATGTTTATCATAATATCACAAATATTTTATCAGTTGACACCTTTTTGATATCTTGCACAAGAACCGAGATAATTGAGCTAGAACTTGACAACATTGACTTGTATGCTTTGTGTACACAATGTGTAAAAAATCTACAGTAGGAAATTAAGATATTTTGAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35525</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>611763</contig_pos>
        <strand>+</strand>
        <context>TCTCGATAAA[A/G]TTTGAGWTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAATTGGTAGAATATAGACAAATAGGGAATACTCAAGTTCTCGATAAA</left_flank>
        <right_flank>TTTGAGTTTTTTTTTTAACTAAAAACAGATTTTTAGATCAGAAAAAAGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGTCGCGTTAGTCGAGGCGGTGCCTTGGGAGTAAGTTACTTCCACGTGGCATATCTCCTCTGAGCCAAATTTTAGAAAAAAGTTGTCAACTACAAAAATGAAGCTCTCGTTTTGTTTAGTATACTCAACAAAATTTCAGAAAGATCCGACAAGTTTGAAGACCATTTTCATGGCGCTAAAACTGGGAGGCTTAAAATGTTTCAATTTTTTGCCTGCCTCAAGAATCAAAGCCCTAGATATCCGATTTTTTTTGTGCGATTACTTTTAAAAACTTACCCACCGTACCATTTTCATTAAATAATAATGATTCCAACCCAGCCGGCCGTCGATACGTCTAATACTTGAGTTACAACAATCATTATCAGATAACCCAAGAATATCAGACATATCAGCGGCCGGTGGGTGGAAGGAATACTGATTATAAGTATGTATAGTATAATAATAGCAGAAAATTGGTAGAATATAGACAAATAGGGAATACTCAAGTTCTCGATAAAATTTGAGTTTTTTTTTTAACTAAAAACAGATTTTTAGATCAGAAAAAAGACCAACTTTGAATGCCGAAAAAAACTATTGAAAATTTTTTAATTAGCCTCAAATTTTCAGAGTATGCTAAACAAGAATAGAGCTTCATTTTTGTAGTTGACCACATTTTTTTGAAATTTAAGCCTGAAGAGATATGCCACATGGGAGCGCCCAATCTTTAGACTCCGACCGTCGCGCTCTTCGAGGTAGTGCGTTGAGAGTAGATCACTTCCACGTGGCATATCTCATAAGAGCGCATTTGTACAAAAAAGTTGTCAACTACAAAAACAAAGCTCTTGTTTTGTTTAGTGTTGTCAAAAAATTTCAAAACACTCGGAACAATATAAAATAGTTTTCCAAGCAATCAAAGTGGACGAACTTTCACCTACCGTATTCTCTTGCACCGTCTGTCTTGGTCTCAGCTCTGCCAGCTTCAACGAGGCAGCTTCAATCGAGCTAGCCGCTCCCAACAG</canonical>
            <polymorphic>ATCGTCGCGTTAGTCGAGGCGGTGCCTTGGGAGTAAGTTACTTCCACGTGGCATATCTCCTCTGAGCCAAATTTTAGAAAAAAGTTGTCAACTACAAAAATGAAGCTCTCGTTTTGTTTAGTATACTCAACAAAATTTCAGAAAGATCCGACAAGTTTGAAGACCATTTTCATGGCGCTAAAACTGGGAGGCTTAAAATGTTTCAATTTTTTGCCTGCCTCAAGAATCAAAGCCCTAGATATCCGATTTTTTTTGTGCGATTACTTTTAAAAACTTACCCACCGTACCATTTTCATTAAATAATAATGATTCCAACCCAGCCGGCCGTCGATACGTCTAATACTTGAGTTACAACAATCATTATCAGATAACCCAAGAATATCAGACATATCAGCGGCCGGTGGGTGGAAGGAATACTGATTATAAGTATGTATAGTATAATAATAGCAGAAAATTGGTAGAATATAGACAAATAGGGAATACTCAAGTTCTCGATAAARTTTGAGTTTTTTTTTTAACTAAAAACAGATTTTTAGATCAGAAAAAAGACCAACTTTGAATGCCGAAAAAAACTATTGAAAATTTTTTAATTAGCCTCAAATTTTCAGAGTATGCTAAACAAGAATAGAGCTTCATTTTTGTAGTTGACCACATTTTTTTGAAATTTAAGCCTGAAGAGATATGCCACATGGGAGCGCCCAATCTTTAGACTCCGACCGTCGCGCTCTTCGAGGTAGTGCGTTGAGAGTAGATCACTTCCACGTGGCATATCTCATAAGAGCGCATTTGTACAAAAAAGTTGTCAACTACAAAAACAAAGCTCTTGTTTTGTTTAGTGTTGTCAAAAAATTTCAAAACACTCGGAACAATATAAAATAGTTTTCCAAGCAATCAAAGTGGACGAACTTTCACCTACCGTATTCTCTTGCACCGTCTGTCTTGGTCTCAGCTCTGCCAGCTTCAACGAGGCAGCTTCAATCGAGCTAGCCGCTCCCAACAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>365 185 153 82 69 64 63 19</canonical_bands>
                <polymorphic_bands>447 185 153 69 64 63 19</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>248 185 153 82 71 69 64 63 46 11 8</canonical_bands>
                <polymorphic_bands>248 185 153 128 71 69 64 63 11 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCAGAAAATTGGTAGAATATAGAC</pcr_primer_p1>
		<pcr_primer_p2>GTGCAAGAGAATACGGTAGG</pcr_primer_p2>
		<pcr_amplicon_size>486</pcr_amplicon_size>
		<canonical_amplicon>AGCAGAAAATTGGTAGAATATAGACAAATAGGGAATACTCAAGTTCTCGATAAAATTTGAGTTTTTTTTTTAACTAAAAACAGATTTTTAGATCAGAAAAAAGACCAACTTTGAATGCCGAAAAAAACTATTGAAAATTTTTTAATTAGCCTCAAATTTTCAGAGTATGCTAAACAAGAATAGAGCTTCATTTTTGTAGTTGACCACATTTTTTTGAAATTTAAGCCTGAAGAGATATGCCACATGGGAGCGCCCAATCTTTAGACTCCGACCGTCGCGCTCTTCGAGGTAGTGCGTTGAGAGTAGATCACTTCCACGTGGCATATCTCATAAGAGCGCATTTGTACAAAAAAGTTGTCAACTACAAAAACAAAGCTCTTGTTTTGTTTAGTGTTGTCAAAAAATTTCAAAACACTCGGAACAATATAAAATAGTTTTCCAAGCAATCAAAGTGGACGAACTTTCACCTACCGTATTCTCTTGCAC</canonical_amplicon>
		<polymorphic_amplicon>AGCAGAAAATTGGTAGAATATAGACAAATAGGGAATACTCAAGTTCTCGATAAARTTTGAGTTTTTTTTTTAACTAAAAACAGATTTTTAGATCAGAAAAAAGACCAACTTTGAATGCCGAAAAAAACTATTGAAAATTTTTTAATTAGCCTCAAATTTTCAGAGTATGCTAAACAAGAATAGAGCTTCATTTTTGTAGTTGACCACATTTTTTTGAAATTTAAGCCTGAAGAGATATGCCACATGGGAGCGCCCAATCTTTAGACTCCGACCGTCGCGCTCTTCGAGGTAGTGCGTTGAGAGTAGATCACTTCCACGTGGCATATCTCATAAGAGCGCATTTGTACAAAAAAGTTGTCAACTACAAAAACAAAGCTCTTGTTTTGTTTAGTGTTGTCAAAAAATTTCAAAACACTCGGAACAATATAAAATAGTTTTCCAAGCAATCAAAGTGGACGAACTTTCACCTACCGTATTCTCTTGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35526</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>611770</contig_pos>
        <strand>+</strand>
        <context>AAARTTTGAG[A/T]TTTTTTTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTAGAATATAGACAAATAGGGAATACTCAAGTTCTCGATAAAATTTGAG</left_flank>
        <right_flank>TTTTTTTTTAACTAAAAACAGATTTTTAGATCAGAAAAAAGACCAACTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTTAGTCGAGGCGGTGCCTTGGGAGTAAGTTACTTCCACGTGGCATATCTCCTCTGAGCCAAATTTTAGAAAAAAGTTGTCAACTACAAAAATGAAGCTCTCGTTTTGTTTAGTATACTCAACAAAATTTCAGAAAGATCCGACAAGTTTGAAGACCATTTTCATGGCGCTAAAACTGGGAGGCTTAAAATGTTTCAATTTTTTGCCTGCCTCAAGAATCAAAGCCCTAGATATCCGATTTTTTTTGTGCGATTACTTTTAAAAACTTACCCACCGTACCATTTTCATTAAATAATAATGATTCCAACCCAGCCGGCCGTCGATACGTCTAATACTTGAGTTACAACAATCATTATCAGATAACCCAAGAATATCAGACATATCAGCGGCCGGTGGGTGGAAGGAATACTGATTATAAGTATGTATAGTATAATAATAGCAGAAAATTGGTAGAATATAGACAAATAGGGAATACTCAAGTTCTCGATAAAATTTGAGTTTTTTTTTTAACTAAAAACAGATTTTTAGATCAGAAAAAAGACCAACTTTGAATGCCGAAAAAAACTATTGAAAATTTTTTAATTAGCCTCAAATTTTCAGAGTATGCTAAACAAGAATAGAGCTTCATTTTTGTAGTTGACCACATTTTTTTGAAATTTAAGCCTGAAGAGATATGCCACATGGGAGCGCCCAATCTTTAGACTCCGACCGTCGCGCTCTTCGAGGTAGTGCGTTGAGAGTAGATCACTTCCACGTGGCATATCTCATAAGAGCGCATTTGTACAAAAAAGTTGTCAACTACAAAAACAAAGCTCTTGTTTTGTTTAGTGTTGTCAAAAAATTTCAAAACACTCGGAACAATATAAAATAGTTTTCCAAGCAATCAAAGTGGACGAACTTTCACCTACCGTATTCTCTTGCACCGTCTGTCTTGGTCTCAGCTCTGCCAGCTTCAACGAGGCAGCTTCAATCGAGCTAGCCGCTCCCAACAGCTCATTC</canonical>
            <polymorphic>CGTTAGTCGAGGCGGTGCCTTGGGAGTAAGTTACTTCCACGTGGCATATCTCCTCTGAGCCAAATTTTAGAAAAAAGTTGTCAACTACAAAAATGAAGCTCTCGTTTTGTTTAGTATACTCAACAAAATTTCAGAAAGATCCGACAAGTTTGAAGACCATTTTCATGGCGCTAAAACTGGGAGGCTTAAAATGTTTCAATTTTTTGCCTGCCTCAAGAATCAAAGCCCTAGATATCCGATTTTTTTTGTGCGATTACTTTTAAAAACTTACCCACCGTACCATTTTCATTAAATAATAATGATTCCAACCCAGCCGGCCGTCGATACGTCTAATACTTGAGTTACAACAATCATTATCAGATAACCCAAGAATATCAGACATATCAGCGGCCGGTGGGTGGAAGGAATACTGATTATAAGTATGTATAGTATAATAATAGCAGAAAATTGGTAGAATATAGACAAATAGGGAATACTCAAGTTCTCGATAAAATTTGAGWTTTTTTTTTAACTAAAAACAGATTTTTAGATCAGAAAAAAGACCAACTTTGAATGCCGAAAAAAACTATTGAAAATTTTTTAATTAGCCTCAAATTTTCAGAGTATGCTAAACAAGAATAGAGCTTCATTTTTGTAGTTGACCACATTTTTTTGAAATTTAAGCCTGAAGAGATATGCCACATGGGAGCGCCCAATCTTTAGACTCCGACCGTCGCGCTCTTCGAGGTAGTGCGTTGAGAGTAGATCACTTCCACGTGGCATATCTCATAAGAGCGCATTTGTACAAAAAAGTTGTCAACTACAAAAACAAAGCTCTTGTTTTGTTTAGTGTTGTCAAAAAATTTCAAAACACTCGGAACAATATAAAATAGTTTTCCAAGCAATCAAAGTGGACGAACTTTCACCTACCGTATTCTCTTGCACCGTCTGTCTTGGTCTCAGCTCTGCCAGCTTCAACGAGGCAGCTTCAATCGAGCTAGCCGCTCCCAACAGCTCATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAAAATTGGTAGAATATAGACAAA</pcr_primer_p1>
		<pcr_primer_p2>GTGCAAGAGAATACGGTAGG</pcr_primer_p2>
		<pcr_amplicon_size>484</pcr_amplicon_size>
		<canonical_amplicon>CAGAAAATTGGTAGAATATAGACAAATAGGGAATACTCAAGTTCTCGATAAAATTTGAGTTTTTTTTTTAACTAAAAACAGATTTTTAGATCAGAAAAAAGACCAACTTTGAATGCCGAAAAAAACTATTGAAAATTTTTTAATTAGCCTCAAATTTTCAGAGTATGCTAAACAAGAATAGAGCTTCATTTTTGTAGTTGACCACATTTTTTTGAAATTTAAGCCTGAAGAGATATGCCACATGGGAGCGCCCAATCTTTAGACTCCGACCGTCGCGCTCTTCGAGGTAGTGCGTTGAGAGTAGATCACTTCCACGTGGCATATCTCATAAGAGCGCATTTGTACAAAAAAGTTGTCAACTACAAAAACAAAGCTCTTGTTTTGTTTAGTGTTGTCAAAAAATTTCAAAACACTCGGAACAATATAAAATAGTTTTCCAAGCAATCAAAGTGGACGAACTTTCACCTACCGTATTCTCTTGCAC</canonical_amplicon>
		<polymorphic_amplicon>CAGAAAATTGGTAGAATATAGACAAATAGGGAATACTCAAGTTCTCGATAAAATTTGAGWTTTTTTTTTAACTAAAAACAGATTTTTAGATCAGAAAAAAGACCAACTTTGAATGCCGAAAAAAACTATTGAAAATTTTTTAATTAGCCTCAAATTTTCAGAGTATGCTAAACAAGAATAGAGCTTCATTTTTGTAGTTGACCACATTTTTTTGAAATTTAAGCCTGAAGAGATATGCCACATGGGAGCGCCCAATCTTTAGACTCCGACCGTCGCGCTCTTCGAGGTAGTGCGTTGAGAGTAGATCACTTCCACGTGGCATATCTCATAAGAGCGCATTTGTACAAAAAAGTTGTCAACTACAAAAACAAAGCTCTTGTTTTGTTTAGTGTTGTCAAAAAATTTCAAAACACTCGGAACAATATAAAATAGTTTTCCAAGCAATCAAAGTGGACGAACTTTCACCTACCGTATTCTCTTGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35527</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>650425</contig_pos>
        <strand></strand>
        <context>tttttggatt[A/C]ttctgwaatc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATT</left_flank>
        <right_flank>TTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCAATGTTTTATTAGTTGACTACTTTTTGAAATCTTTTATAAAAAACGAGATATATAAACTCAAAGTTGGCAATGTGGAGAAACTTCAAGAGGCCGCCGCACTGCTTCCAGCGGAGCTATGCGGTGTATTTCATATTTAAAAATATAACATAAAAAAGAGACTAAAATCTGATTTGTTTAAAATTTCCTAAAACACACTAAAAATCTAGTGCTTCATTTTTGCAGATGAGTCTTGAAGAGATATGCCTAGCTCACATCAGTTGGTTCTGCGTCTTCAGCACTTCCACGTGGCATATCTCCTCTGGGTCCAATTATATGGAAAAGATGTCAACTACAAAAATAAAGCTCTAATCATGTTTTATAGAAACTAAAAATTTCAGAAAAATCAGCCAAATTTGAGTAATTATTTTTAAAGATTGAAGTGGGCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAA</canonical>
            <polymorphic>AGCAATGTTTTATTAGTTGACTACTTTTTGAAATCTTTTATAAAAAACGAGATATATAAACTCAAAGTTGGCAATGTGGAGAAACTTCAAGAGGCCGCCGCACTGCTTCCAGCGGAGCTATGCGGTGTATTTCATATTTAAAAATATAACATAAAAAAGAGACTAAAATCTGATTTGTTTAAAATTTCCTAAAACACACTAAAAATCTAGTGCTTCATTTTTGCAGATGAGTCTTGAAGAGATATGCCTAGCTCACATCAGTTGGTTCTGCGTCTTCAGCACTTCCACGTGGCATATCTCCTCTGGGTCCAATTATATGGAAAAGATGTCAACTACAAAAATAAAGCTCTAATCATGTTTTATAGAAACTAAAAATTTCAGAAAAATCAGCCAAATTTGAGTAATTATTTTTAAAGATTGAAGTGGGCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTMTTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGACCTCTAAAAGAATCAAT</pcr_primer_p1>
		<pcr_primer_p2>CAAGGAATCCAGAATATCTAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>444</pcr_amplicon_size>
		<canonical_amplicon>GCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTG</canonical_amplicon>
		<polymorphic_amplicon>GCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTMTTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35528</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>650431</contig_pos>
        <strand></strand>
        <context>gattmttctg[A/T]aatcttcaga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTG</left_flank>
        <right_flank>AATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGAC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTATTAGTTGACTACTTTTTGAAATCTTTTATAAAAAACGAGATATATAAACTCAAAGTTGGCAATGTGGAGAAACTTCAAGAGGCCGCCGCACTGCTTCCAGCGGAGCTATGCGGTGTATTTCATATTTAAAAATATAACATAAAAAAGAGACTAAAATCTGATTTGTTTAAAATTTCCTAAAACACACTAAAAATCTAGTGCTTCATTTTTGCAGATGAGTCTTGAAGAGATATGCCTAGCTCACATCAGTTGGTTCTGCGTCTTCAGCACTTCCACGTGGCATATCTCCTCTGGGTCCAATTATATGGAAAAGATGTCAACTACAAAAATAAAGCTCTAATCATGTTTTATAGAAACTAAAAATTTCAGAAAAATCAGCCAAATTTGAGTAATTATTTTTAAAGATTGAAGTGGGCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGAT</canonical>
            <polymorphic>GTTTTATTAGTTGACTACTTTTTGAAATCTTTTATAAAAAACGAGATATATAAACTCAAAGTTGGCAATGTGGAGAAACTTCAAGAGGCCGCCGCACTGCTTCCAGCGGAGCTATGCGGTGTATTTCATATTTAAAAATATAACATAAAAAAGAGACTAAAATCTGATTTGTTTAAAATTTCCTAAAACACACTAAAAATCTAGTGCTTCATTTTTGCAGATGAGTCTTGAAGAGATATGCCTAGCTCACATCAGTTGGTTCTGCGTCTTCAGCACTTCCACGTGGCATATCTCCTCTGGGTCCAATTATATGGAAAAGATGTCAACTACAAAAATAAAGCTCTAATCATGTTTTATAGAAACTAAAAATTTCAGAAAAATCAGCCAAATTTGAGTAATTATTTTTAAAGATTGAAGTGGGCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGWAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>248 244 209 165 124 10</canonical_bands>
                <polymorphic_bands>248 244 209 165 134</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGACCTCTAAAAGAATCAAT</pcr_primer_p1>
		<pcr_primer_p2>CAAGGAATCCAGAATATCTAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>444</pcr_amplicon_size>
		<canonical_amplicon>GCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTG</canonical_amplicon>
		<polymorphic_amplicon>GCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGWAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35529</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>650540</contig_pos>
        <strand></strand>
        <context>cattcatctt[T/A]tggcgccgac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTT</left_flank>
        <right_flank>TGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTATGCGGTGTATTTCATATTTAAAAATATAACATAAAAAAGAGACTAAAATCTGATTTGTTTAAAATTTCCTAAAACACACTAAAAATCTAGTGCTTCATTTTTGCAGATGAGTCTTGAAGAGATATGCCTAGCTCACATCAGTTGGTTCTGCGTCTTCAGCACTTCCACGTGGCATATCTCCTCTGGGTCCAATTATATGGAAAAGATGTCAACTACAAAAATAAAGCTCTAATCATGTTTTATAGAAACTAAAAATTTCAGAAAAATCAGCCAAATTTGAGTAATTATTTTTAAAGATTGAAGTGGGCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTT</canonical>
            <polymorphic>AGCTATGCGGTGTATTTCATATTTAAAAATATAACATAAAAAAGAGACTAAAATCTGATTTGTTTAAAATTTCCTAAAACACACTAAAAATCTAGTGCTTCATTTTTGCAGATGAGTCTTGAAGAGATATGCCTAGCTCACATCAGTTGGTTCTGCGTCTTCAGCACTTCCACGTGGCATATCTCCTCTGGGTCCAATTATATGGAAAAGATGTCAACTACAAAAATAAAGCTCTAATCATGTTTTATAGAAACTAAAAATTTCAGAAAAATCAGCCAAATTTGAGTAATTATTTTTAAAGATTGAAGTGGGCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTWTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGACCTCTAAAAGAATCAAT</pcr_primer_p1>
		<pcr_primer_p2>CAAGGAATCCAGAATATCTAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>444</pcr_amplicon_size>
		<canonical_amplicon>GCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTG</canonical_amplicon>
		<polymorphic_amplicon>GCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTWTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35530</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>650630</contig_pos>
        <strand></strand>
        <context>ttttacaaaa[A/C]agttgtcaac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAA</left_flank>
        <right_flank>AGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAGTGCTTCATTTTTGCAGATGAGTCTTGAAGAGATATGCCTAGCTCACATCAGTTGGTTCTGCGTCTTCAGCACTTCCACGTGGCATATCTCCTCTGGGTCCAATTATATGGAAAAGATGTCAACTACAAAAATAAAGCTCTAATCATGTTTTATAGAAACTAAAAATTTCAGAAAAATCAGCCAAATTTGAGTAATTATTTTTAAAGATTGAAGTGGGCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCC</canonical>
            <polymorphic>TCTAGTGCTTCATTTTTGCAGATGAGTCTTGAAGAGATATGCCTAGCTCACATCAGTTGGTTCTGCGTCTTCAGCACTTCCACGTGGCATATCTCCTCTGGGTCCAATTATATGGAAAAGATGTCAACTACAAAAATAAAGCTCTAATCATGTTTTATAGAAACTAAAAATTTCAGAAAAATCAGCCAAATTTGAGTAATTATTTTTAAAGATTGAAGTGGGCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAMAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGACCTCTAAAAGAATCAAT</pcr_primer_p1>
		<pcr_primer_p2>CAAGGAATCCAGAATATCTAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>444</pcr_amplicon_size>
		<canonical_amplicon>GCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTG</canonical_amplicon>
		<polymorphic_amplicon>GCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAMAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35531</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>650684</contig_pos>
        <strand></strand>
        <context>cacagaaatt[C/T]tcagrtcaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATT</left_flank>
        <right_flank>TCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTGGTTCTGCGTCTTCAGCACTTCCACGTGGCATATCTCCTCTGGGTCCAATTATATGGAAAAGATGTCAACTACAAAAATAAAGCTCTAATCATGTTTTATAGAAACTAAAAATTTCAGAAAAATCAGCCAAATTTGAGTAATTATTTTTAAAGATTGAAGTGGGCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTACAAAATCGCTATGAAGCCAACAAATGAATAAGCGAAAAG</canonical>
            <polymorphic>AGTTGGTTCTGCGTCTTCAGCACTTCCACGTGGCATATCTCCTCTGGGTCCAATTATATGGAAAAGATGTCAACTACAAAAATAAAGCTCTAATCATGTTTTATAGAAACTAAAAATTTCAGAAAAATCAGCCAAATTTGAGTAATTATTTTTAAAGATTGAAGTGGGCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTYTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTACAAAATCGCTATGAAGCCAACAAATGAATAAGCGAAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>455 164 135 114 62 50 20</canonical_bands>
                <polymorphic_bands>455 164 135 114 112 20</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>320 296 180 178 26</canonical_bands>
                <polymorphic_bands>358 320 296 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGACCTCTAAAAGAATCAAT</pcr_primer_p1>
		<pcr_primer_p2>CAAGGAATCCAGAATATCTAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>444</pcr_amplicon_size>
		<canonical_amplicon>GCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTG</canonical_amplicon>
		<polymorphic_amplicon>GCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTYTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35532</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>650689</contig_pos>
        <strand></strand>
        <context>aaattytcag[A/G]tcaatacaac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAG</left_flank>
        <right_flank>TCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCTGCGTCTTCAGCACTTCCACGTGGCATATCTCCTCTGGGTCCAATTATATGGAAAAGATGTCAACTACAAAAATAAAGCTCTAATCATGTTTTATAGAAACTAAAAATTTCAGAAAAATCAGCCAAATTTGAGTAATTATTTTTAAAGATTGAAGTGGGCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTACAAAATCGCTATGAAGCCAACAAATGAATAAGCGAAAAGACCAT</canonical>
            <polymorphic>GTTCTGCGTCTTCAGCACTTCCACGTGGCATATCTCCTCTGGGTCCAATTATATGGAAAAGATGTCAACTACAAAAATAAAGCTCTAATCATGTTTTATAGAAACTAAAAATTTCAGAAAAATCAGCCAAATTTGAGTAATTATTTTTAAAGATTGAAGTGGGCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGRTCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTACAAAATCGCTATGAAGCCAACAAATGAATAAGCGAAAAGACCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>498 261 241</canonical_bands>
                <polymorphic_bands>739 261</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>502 248 124 116 10</canonical_bands>
                <polymorphic_bands>750 124 116 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGACCTCTAAAAGAATCAAT</pcr_primer_p1>
		<pcr_primer_p2>CAAGGAATCCAGAATATCTAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>444</pcr_amplicon_size>
		<canonical_amplicon>GCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTG</canonical_amplicon>
		<polymorphic_amplicon>GCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGRTCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35533</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>650725</contig_pos>
        <strand>+</strand>
        <context>tttcatgact[G/T]ttaaaatttg</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACT</left_flank>
        <right_flank>TTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTGGGTCCAATTATATGGAAAAGATGTCAACTACAAAAATAAAGCTCTAATCATGTTTTATAGAAACTAAAAATTTCAGAAAAATCAGCCAAATTTGAGTAATTATTTTTAAAGATTGAAGTGGGCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTACAAAATCGCTATGAAGCCAACAAATGAATAAGCGAAAAGACCATTAACACGAAACACAAAACAATAAATCAGCTTTTTCT</canonical>
            <polymorphic>CTCTGGGTCCAATTATATGGAAAAGATGTCAACTACAAAAATAAAGCTCTAATCATGTTTTATAGAAACTAAAAATTTCAGAAAAATCAGCCAAATTTGAGTAATTATTTTTAAAGATTGAAGTGGGCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTKTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTACAAAATCGCTATGAAGCCAACAAATGAATAAGCGAAAAGACCATTAACACGAAACACAAAACAATAAATCAGCTTTTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>498 390 112</canonical_bands>
                <polymorphic_bands>888 112</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGACCTCTAAAAGAATCAAT</pcr_primer_p1>
		<pcr_primer_p2>CAAGGAATCCAGAATATCTAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>444</pcr_amplicon_size>
		<canonical_amplicon>GCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTG</canonical_amplicon>
		<polymorphic_amplicon>GCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTKTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35534</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>650753</contig_pos>
        <strand></strand>
        <context>aatatggaaa[C/A]TCTAGTTAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAA</left_flank>
        <right_flank>TCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAACTACAAAAATAAAGCTCTAATCATGTTTTATAGAAACTAAAAATTTCAGAAAAATCAGCCAAATTTGAGTAATTATTTTTAAAGATTGAAGTGGGCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTACAAAATCGCTATGAAGCCAACAAATGAATAAGCGAAAAGACCATTAACACGAAACACAAAACAATAAATCAGCTTTTTCTTCTTTTTCATGTCCTTATCACCTAGCCG</canonical>
            <polymorphic>TCAACTACAAAAATAAAGCTCTAATCATGTTTTATAGAAACTAAAAATTTCAGAAAAATCAGCCAAATTTGAGTAATTATTTTTAAAGATTGAAGTGGGCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAAMTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTACAAAATCGCTATGAAGCCAACAAATGAATAAGCGAAAAGACCATTAACACGAAACACAAAACAATAAATCAGCTTTTTCTTCTTTTTCATGTCCTTATCACCTAGCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGACCTCTAAAAGAATCAAT</pcr_primer_p1>
		<pcr_primer_p2>GTTAGAATGCTCCAAGGAATC</pcr_primer_p2>
		<pcr_amplicon_size>456</pcr_amplicon_size>
		<canonical_amplicon>GCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAAC</canonical_amplicon>
		<polymorphic_amplicon>GCGACCTCTAAAAGAATCAATGGCGGCTTAAGTGGACAGGACCTAAAAAAGAGTGGTTCAAACTTTTTGGATTATTCTGAAATCTTCAGAGTATACTATTCAAATTTAGAGCTTCATTTTTCTAGTTGACCACTTTTTCGAAAAATGAGGTCCTGAGAAGATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAAMTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35535</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>651010</contig_pos>
        <strand></strand>
        <context>ttttgatatc[A/G]tgttaaacat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATC</left_flank>
        <right_flank>TGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACC</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTACAAAATCGCTATGAAGCCAACAAATGAATAAGCGAAAAGACCATTAACACGAAACACAAAACAATAAATCAGCTTTTTCTTCTTTTTCATGTCCTTATCACCTAGCCGTGGGCCGTCTATCAAAAGACACAATTGTTGCAACAAATTAATGACGCATTCCTCGCTTTTCCTTTCTTTTCTCCTGCCTTTATTGTCTACCTTCCCAAAACCCCAATCATCAGAAGACTCCTCCTCTGTGTCTACCCCCCGAAATTCTTGGACCCCCCTTTCTCTAGCCACCCTCTTCCTCTTCTACACTATCTCGTTTGAGTTGACGCATCTCAAGTGCGCCCTTGGCGCGTTATTGGATAGATGCTATTCAATAA</canonical>
            <polymorphic>GATATGCCACGTGGAAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCRTGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTACAAAATCGCTATGAAGCCAACAAATGAATAAGCGAAAAGACCATTAACACGAAACACAAAACAATAAATCAGCTTTTTCTTCTTTTTCATGTCCTTATCACCTAGCCGTGGGCCGTCTATCAAAAGACACAATTGTTGCAACAAATTAATGACGCATTCCTCGCTTTTCCTTTCTTTTCTCCTGCCTTTATTGTCTACCTTCCCAAAACCCCAATCATCAGAAGACTCCTCCTCTGTGTCTACCCCCCGAAATTCTTGGACCCCCCTTTCTCTAGCCACCCTCTTCCTCTTCTACACTATCTCGTTTGAGTTGACGCATCTCAAGTGCGCCCTTGGCGCGTTATTGGATAGATGCTATTCAATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>277 224 199 125 92 83</canonical_bands>
                <polymorphic_bands>316 277 199 125 83</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTAGGCTTAGCGACTCATA</pcr_primer_p1>
		<pcr_primer_p2>TAGTTCTTTTCACAGGGGTTACT</pcr_primer_p2>
		<pcr_amplicon_size>292</pcr_amplicon_size>
		<canonical_amplicon>AAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTA</canonical_amplicon>
		<polymorphic_amplicon>AAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCRTGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35536</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>651024</contig_pos>
        <strand></strand>
        <context>taaacatttt[G/T]ttggttgacc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTT</left_flank>
        <right_flank>TTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTACAAAATCGCTATGAAGCCAACAAATGAATAAGCGAAAAGACCATTAACACGAAACACAAAACAATAAATCAGCTTTTTCTTCTTTTTCATGTCCTTATCACCTAGCCGTGGGCCGTCTATCAAAAGACACAATTGTTGCAACAAATTAATGACGCATTCCTCGCTTTTCCTTTCTTTTCTCCTGCCTTTATTGTCTACCTTCCCAAAACCCCAATCATCAGAAGACTCCTCCTCTGTGTCTACCCCCCGAAATTCTTGGACCCCCCTTTCTCTAGCCACCCTCTTCCTCTTCTACACTATCTCGTTTGAGTTGACGCATCTCAAGTGCGCCCTTGGCGCGTTATTGGATAGATGCTATTCAATAAAAGACAAGGATATA</canonical>
            <polymorphic>AAGCGCATTCATCTTTTGGCGCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTKTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTACAAAATCGCTATGAAGCCAACAAATGAATAAGCGAAAAGACCATTAACACGAAACACAAAACAATAAATCAGCTTTTTCTTCTTTTTCATGTCCTTATCACCTAGCCGTGGGCCGTCTATCAAAAGACACAATTGTTGCAACAAATTAATGACGCATTCCTCGCTTTTCCTTTCTTTTCTCCTGCCTTTATTGTCTACCTTCCCAAAACCCCAATCATCAGAAGACTCCTCCTCTGTGTCTACCCCCCGAAATTCTTGGACCCCCCTTTCTCTAGCCACCCTCTTCCTCTTCTACACTATCTCGTTTGAGTTGACGCATCTCAAGTGCGCCCTTGGCGCGTTATTGGATAGATGCTATTCAATAAAAGACAAGGATATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTAGGCTTAGCGACTCATA</pcr_primer_p1>
		<pcr_primer_p2>TAGTTCTTTTCACAGGGGTTACT</pcr_primer_p2>
		<pcr_amplicon_size>292</pcr_amplicon_size>
		<canonical_amplicon>AAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTA</canonical_amplicon>
		<polymorphic_amplicon>AAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTKTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35537</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>651044</contig_pos>
        <strand></strand>
        <context>cattttttga[T/A]acctcttaca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGA</left_flank>
        <right_flank>ACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTACAAAATCGCTATGAAGCCAACAAATGAATAAGCGAAAAGACCATTAACACGAAACACAAAACAATAAATCAGCTTTTTCTTCTTTTTCATGTCCTTATCACCTAGCCGTGGGCCGTCTATCAAAAGACACAATTGTTGCAACAAATTAATGACGCATTCCTCGCTTTTCCTTTCTTTTCTCCTGCCTTTATTGTCTACCTTCCCAAAACCCCAATCATCAGAAGACTCCTCCTCTGTGTCTACCCCCCGAAATTCTTGGACCCCCCTTTCTCTAGCCACCCTCTTCCTCTTCTACACTATCTCGTTTGAGTTGACGCATCTCAAGTGCGCCCTTGGCGCGTTATTGGATAGATGCTATTCAATAAAAGACAAGGATATAAGATGTACCAACCTCATTAT</canonical>
            <polymorphic>GCCGACCGTCGCGCTAGTCAAGGCAGTACCTTGAGAGTAGGCCGCTTCCATGTGGCATATCTCCTCTGGGTCGAATTTTACAAAAAAGTTGTCAACTACAAAAATGAAGCTCTAGTCAAGTTTTATACCCACAGAAATTCTCAGATCAATACAACCAAGTATAATGGCTTTTTCATGACTTTTAAAATTTGTATTGAAAATATGGAAACTCTAGTTAGATACTGTTGGTTCTAGATATTCTGGATTCCTTGGAGCATTCTAACTAGCAAGGTAGGCGCTAGTTGAAGCTTGCTATAAAAACCATTGTAAAAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGAWACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTACAAAATCGCTATGAAGCCAACAAATGAATAAGCGAAAAGACCATTAACACGAAACACAAAACAATAAATCAGCTTTTTCTTCTTTTTCATGTCCTTATCACCTAGCCGTGGGCCGTCTATCAAAAGACACAATTGTTGCAACAAATTAATGACGCATTCCTCGCTTTTCCTTTCTTTTCTCCTGCCTTTATTGTCTACCTTCCCAAAACCCCAATCATCAGAAGACTCCTCCTCTGTGTCTACCCCCCGAAATTCTTGGACCCCCCTTTCTCTAGCCACCCTCTTCCTCTTCTACACTATCTCGTTTGAGTTGACGCATCTCAAGTGCGCCCTTGGCGCGTTATTGGATAGATGCTATTCAATAAAAGACAAGGATATAAGATGTACCAACCTCATTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTAGGCTTAGCGACTCATA</pcr_primer_p1>
		<pcr_primer_p2>TAGTTCTTTTCACAGGGGTTACT</pcr_primer_p2>
		<pcr_amplicon_size>292</pcr_amplicon_size>
		<canonical_amplicon>AAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGATACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTA</canonical_amplicon>
		<polymorphic_amplicon>AAACTAGGCTTAGCGACTCATAGCGACCGCATAGCTCAGCCAGAAGCAGTGGGCCGGTTCTAACATGTTGAAGATGATCCCAATTTTGACCTAATTTATCTCGGTTCCTGTGAAAGATATCAAAAAGTTGTCAACTGACAAAATGTTTTTGATATCATGTTAAACATTTTGTTGGTTGACCATTTTTTGAWACCTCTTACAGTAACCGAGATAAATGGGATTAAAGTTGAAGGTTAGGGTTAAGCCTAACCTTACACTGTAAGGCTTACAGTAACCCCTGTGAAAAGAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35538</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>652305</contig_pos>
        <strand>+</strand>
        <context>ACGCCCAATR[A/G]TTTGATATAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAGTTTCTTACCAGTTGCGCTATACCGGCGCGCGCGGCTACGCCCAATG</left_flank>
        <right_flank>TTTGATATAAGAAAAACCCGAACGACAGTGGTGGCTGGCTCCCACTGTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTCCGGTTTCGATGGTTTCCTGAAACTCCAAGAAGACATCAAAGAATCTCTCAGGAATTTTATGCGATTCGGGCAAAAGTCCGATTTATTATCCCAGCTAAACGGTCAACAACTCAAATGTGTCAGCCAGATGTGTAAGTTTTAAGGGTTCAATTTGAAAACTTTTTGTTATTTTTAGTGAAATCTCGATCTACGACATCTTCTAGTGGAAAAACATCGAATGGCGAATATTCTGGCGAGCGAATCAGGGCGAAAAGTGTGAAAGCCGTTGAAGAAGACATTCCCCCAGTACCATTTGGAATACCACCGTTAGAAGTCAATGGTTTGTATCGGGACGATGGTTTGGATGAGGAGGAGCACTATAGCGATATGGATTGGTTAGTAAAAAAGAGGCAAAATAGATTTGAGAGGGGGAGGAGTCGAACTTTGGTGTTGAGATTGGTAGACAAGTTTCTTACCAGTTGCGCTATACCGGCGCGCGCGGCTACGCCCAATGTTTTGATATAAGAAAAACCCGAACGACAGTGGTGGCTGGCTCCCACTGTCCTCATTGTGGCGCAATGGTAGCAGCTCTGTCTTTCAATCTGGAACTTGTTGGTTCGACTCCCACCACCTCTCAATCTGTTTTTGCTTTCTTTTTTAATCAATTAAGATTTAATTCAGGCTCAACAGTCAACGTTCAAGCAGATTCCCAGAGGAACCCATACCGAAATCTGCACCTGTCAAGTCCAAAACTCCAGAAGTTCCGAAATCTGTGAAATTTTCGGAACCAGTCAAAAAAATAGCTTCAAGAGCGAGACCGATTCAGAAATCTGATGCTCAGATTCAAACTGATCAGTTGGTGTTGAAGAAGGATGAGCAAGAAGAGAATTTGAAGAAAACTAGTGGGAGGAGTGAGAAAATTGTAAGTTTTTAATTTGAGCCTAAATAACTCGGTTCCTGTGAAAGATATCAAGAAGTAGTAAACTGCCAAAATATTGGAAATTTTATAACAAAC</canonical>
            <polymorphic>AAACTCCGGTTTCGATGGTTTCCTGAAACTCCAAGAAGACATCAAAGAATCTCTCAGGAATTTTATGCGATTCGGGCAAAAGTCCGATTTATTATCCCAGCTAAACGGTCAACAACTCAAATGTGTCAGCCAGATGTGTAAGTTTTAAGGGTTCAATTTGAAAACTTTTTGTTATTTTTAGTGAAATCTCGATCTACGACATCTTCTAGTGGAAAAACATCGAATGGCGAATATTCTGGCGAGCGAATCAGGGCGAAAAGTGTGAAAGCCGTTGAAGAAGACATTCCCCCAGTACCATTTGGAATACCACCGTTAGAAGTCAATGGTTTGTATCGGGACGATGGTTTGGATGAGGAGGAGCACTATAGCGATATGGATTGGTTAGTAAAAAAGAGGCAAAATAGATTTGAGAGGGGGAGGAGTCGAACTTTGGTGTTGAGATTGGTAGACAAGTTTCTTACCAGTTGCGCTATACCGGCGCGCGCGGCTACGCCCAATGRTTTGATATAAGAAAAACCCGAACGACAGTGGTGGCTGGCTCCCACTGTCCTCATTGTGGCGCAATGGTAGCAGCTCTGTCTTTCAATCTGGAACTTGTTGGTTCGACTCCCACCACCTCTCAATCTGTTTTTGCTTTCTTTTTTAATCAATTAAGATTTAATTCAGGCTCAACAGTCAACGTTCAAGCAGATTCCCAGAGGAACCCATACCGAAATCTGCACCTGTCAAGTCCAAAACTCCAGAAGTTCCGAAATCTGTGAAATTTTCGGAACCAGTCAAAAAAATAGCTTCAAGAGCGAGACCGATTCAGAAATCTGATGCTCAGATTCAAACTGATCAGTTGGTGTTGAAGAAGGATGAGCAAGAAGAGAATTTGAAGAAAACTAGTGGGAGGAGTGAGAAAATTGTAAGTTTTTAATTTGAGCCTAAATAACTCGGTTCCTGTGAAAGATATCAAGAAGTAGTAAACTGCCAAAATATTGGAAATTTTATAACAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTATAGCGATATGGATTGGTTA</pcr_primer_p1>
		<pcr_primer_p2>AGATTGAAAGACAGAGCTGCTA</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>ACTATAGCGATATGGATTGGTTAGTAAAAAAGAGGCAAAATAGATTTGAGAGGGGGAGGAGTCGAACTTTGGTGTTGAGATTGGTAGACAAGTTTCTTACCAGTTGCGCTATACCGGCGCGCGCGGCTACGCCCAATGTTTTGATATAAGAAAAACCCGAACGACAGTGGTGGCTGGCTCCCACTGTCCTCATTGTGGCGCAATGGTAGCAGCTCTGTCTTTCAATCT</canonical_amplicon>
		<polymorphic_amplicon>ACTATAGCGATATGGATTGGTTAGTAAAAAAGAGGCAAAATAGATTTGAGAGGGGGAGGAGTCGAACTTTGGTGTTGAGATTGGTAGACAAGTTTCTTACCAGTTGCGCTATACCGGCGCGCGCGGCTACGCCCAATGRTTTGATATAAGAAAAACCCGAACGACAGTGGTGGCTGGCTCCCACTGTCCTCATTGTGGCGCAATGGTAGCAGCTCTGTCTTTCAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35539</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>652695</contig_pos>
        <strand>+</strand>
        <context>GAAAACTAGT[C/G]GGAGGAGTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGTTGGTGTTGAAGAAGGATGAGCAAGAAGAGAATTTGAAGAAAACTAGT</left_flank>
        <right_flank>GGAGGAGTGAGAAAATTGTAAGTTTTTAATTTGAGCCTAAATAACTCGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAGGCAAAATAGATTTGAGAGGGGGAGGAGTCGAACTTTGGTGTTGAGATTGGTAGACAAGTTTCTTACCAGTTGCGCTATACCGGCGCGCGCGGCTACGCCCAATGTTTTGATATAAGAAAAACCCGAACGACAGTGGTGGCTGGCTCCCACTGTCCTCATTGTGGCGCAATGGTAGCAGCTCTGTCTTTCAATCTGGAACTTGTTGGTTCGACTCCCACCACCTCTCAATCTGTTTTTGCTTTCTTTTTTAATCAATTAAGATTTAATTCAGGCTCAACAGTCAACGTTCAAGCAGATTCCCAGAGGAACCCATACCGAAATCTGCACCTGTCAAGTCCAAAACTCCAGAAGTTCCGAAATCTGTGAAATTTTCGGAACCAGTCAAAAAAATAGCTTCAAGAGCGAGACCGATTCAGAAATCTGATGCTCAGATTCAAACTGATCAGTTGGTGTTGAAGAAGGATGAGCAAGAAGAGAATTTGAAGAAAACTAGTGGGAGGAGTGAGAAAATTGTAAGTTTTTAATTTGAGCCTAAATAACTCGGTTCCTGTGAAAGATATCAAGAAGTAGTAAACTGCCAAAATATTGGAAATTTTATAACAAACATTTTGTTAGTTAACCACTTTTTGATATCTCTTGTAAAAACTGAGATAATAAAGCTCAACGTAAGCTACTTGGTCGGCGTCACCACTATGCTTGCACTTTAAGCTCTACTATCTAGATTTCTGTAAGAGATTTCAAAAAATAGTTAACTGATGAAATATAGGAAAATTCAAGGAAAACATTTTGTTTGTTGAACACTTTTTGATATCCTACGAAATGAGATATATGGGCTCTGAATTTATTTTATATCTAAAAAATTCAAGACCGCTGAAACTGGAACCAACTGTCGATTGCTGATCACTCCAAGAGTAGAAGAGGATTTTTCTGGTAAATCCTCTCCACTTTTATCACCAATCAGTACAGTACCCTCGGATATTAGTGAAGGAGAAGTC</canonical>
            <polymorphic>AAGAGGCAAAATAGATTTGAGAGGGGGAGGAGTCGAACTTTGGTGTTGAGATTGGTAGACAAGTTTCTTACCAGTTGCGCTATACCGGCGCGCGCGGCTACGCCCAATGTTTTGATATAAGAAAAACCCGAACGACAGTGGTGGCTGGCTCCCACTGTCCTCATTGTGGCGCAATGGTAGCAGCTCTGTCTTTCAATCTGGAACTTGTTGGTTCGACTCCCACCACCTCTCAATCTGTTTTTGCTTTCTTTTTTAATCAATTAAGATTTAATTCAGGCTCAACAGTCAACGTTCAAGCAGATTCCCAGAGGAACCCATACCGAAATCTGCACCTGTCAAGTCCAAAACTCCAGAAGTTCCGAAATCTGTGAAATTTTCGGAACCAGTCAAAAAAATAGCTTCAAGAGCGAGACCGATTCAGAAATCTGATGCTCAGATTCAAACTGATCAGTTGGTGTTGAAGAAGGATGAGCAAGAAGAGAATTTGAAGAAAACTAGTSGGAGGAGTGAGAAAATTGTAAGTTTTTAATTTGAGCCTAAATAACTCGGTTCCTGTGAAAGATATCAAGAAGTAGTAAACTGCCAAAATATTGGAAATTTTATAACAAACATTTTGTTAGTTAACCACTTTTTGATATCTCTTGTAAAAACTGAGATAATAAAGCTCAACGTAAGCTACTTGGTCGGCGTCACCACTATGCTTGCACTTTAAGCTCTACTATCTAGATTTCTGTAAGAGATTTCAAAAAATAGTTAACTGATGAAATATAGGAAAATTCAAGGAAAACATTTTGTTTGTTGAACACTTTTTGATATCCTACGAAATGAGATATATGGGCTCTGAATTTATTTTATATCTAAAAAATTCAAGACCGCTGAAACTGGAACCAACTGTCGATTGCTGATCACTCCAAGAGTAGAAGAGGATTTTTCTGGTAAATCCTCTCCACTTTTATCACCAATCAGTACAGTACCCTCGGATATTAGTGAAGGAGAAGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>106 103 99 95 87 70 65 54 48 45 43 41 39 31 14 11 11 11 9 9 3 3 3</canonical_bands>
                <polymorphic_bands>106 103 99 95 87 70 65 54 52 48 45 41 39 31 14 11 11 11 9 3 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCAGTTGGTGTTGAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>ACAGTTGGTTCCAGTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>450</pcr_amplicon_size>
		<canonical_amplicon>GATCAGTTGGTGTTGAAGAAGGATGAGCAAGAAGAGAATTTGAAGAAAACTAGTGGGAGGAGTGAGAAAATTGTAAGTTTTTAATTTGAGCCTAAATAACTCGGTTCCTGTGAAAGATATCAAGAAGTAGTAAACTGCCAAAATATTGGAAATTTTATAACAAACATTTTGTTAGTTAACCACTTTTTGATATCTCTTGTAAAAACTGAGATAATAAAGCTCAACGTAAGCTACTTGGTCGGCGTCACCACTATGCTTGCACTTTAAGCTCTACTATCTAGATTTCTGTAAGAGATTTCAAAAAATAGTTAACTGATGAAATATAGGAAAATTCAAGGAAAACATTTTGTTTGTTGAACACTTTTTGATATCCTACGAAATGAGATATATGGGCTCTGAATTTATTTTATATCTAAAAAATTCAAGACCGCTGAAACTGGAACCAACTGT</canonical_amplicon>
		<polymorphic_amplicon>GATCAGTTGGTGTTGAAGAAGGATGAGCAAGAAGAGAATTTGAAGAAAACTAGTSGGAGGAGTGAGAAAATTGTAAGTTTTTAATTTGAGCCTAAATAACTCGGTTCCTGTGAAAGATATCAAGAAGTAGTAAACTGCCAAAATATTGGAAATTTTATAACAAACATTTTGTTAGTTAACCACTTTTTGATATCTCTTGTAAAAACTGAGATAATAAAGCTCAACGTAAGCTACTTGGTCGGCGTCACCACTATGCTTGCACTTTAAGCTCTACTATCTAGATTTCTGTAAGAGATTTCAAAAAATAGTTAACTGATGAAATATAGGAAAATTCAAGGAAAACATTTTGTTTGTTGAACACTTTTTGATATCCTACGAAATGAGATATATGGGCTCTGAATTTATTTTATATCTAAAAAATTCAAGACCGCTGAAACTGGAACCAACTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35540</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>652789</contig_pos>
        <strand></strand>
        <context>caaaatattg[G/A]aaattttata</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACTCGGTTCCTGTGAAAGATATCAAGAAGTAGTAAACTGCCAAAATATTG</left_flank>
        <right_flank>AAATTTTATAACAAACATTTTGTTAGTTAACCACTTTTTGATATCTCTTG</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGCTACGCCCAATGTTTTGATATAAGAAAAACCCGAACGACAGTGGTGGCTGGCTCCCACTGTCCTCATTGTGGCGCAATGGTAGCAGCTCTGTCTTTCAATCTGGAACTTGTTGGTTCGACTCCCACCACCTCTCAATCTGTTTTTGCTTTCTTTTTTAATCAATTAAGATTTAATTCAGGCTCAACAGTCAACGTTCAAGCAGATTCCCAGAGGAACCCATACCGAAATCTGCACCTGTCAAGTCCAAAACTCCAGAAGTTCCGAAATCTGTGAAATTTTCGGAACCAGTCAAAAAAATAGCTTCAAGAGCGAGACCGATTCAGAAATCTGATGCTCAGATTCAAACTGATCAGTTGGTGTTGAAGAAGGATGAGCAAGAAGAGAATTTGAAGAAAACTAGTGGGAGGAGTGAGAAAATTGTAAGTTTTTAATTTGAGCCTAAATAACTCGGTTCCTGTGAAAGATATCAAGAAGTAGTAAACTGCCAAAATATTGGAAATTTTATAACAAACATTTTGTTAGTTAACCACTTTTTGATATCTCTTGTAAAAACTGAGATAATAAAGCTCAACGTAAGCTACTTGGTCGGCGTCACCACTATGCTTGCACTTTAAGCTCTACTATCTAGATTTCTGTAAGAGATTTCAAAAAATAGTTAACTGATGAAATATAGGAAAATTCAAGGAAAACATTTTGTTTGTTGAACACTTTTTGATATCCTACGAAATGAGATATATGGGCTCTGAATTTATTTTATATCTAAAAAATTCAAGACCGCTGAAACTGGAACCAACTGTCGATTGCTGATCACTCCAAGAGTAGAAGAGGATTTTTCTGGTAAATCCTCTCCACTTTTATCACCAATCAGTACAGTACCCTCGGATATTAGTGAAGGAGAAGTCTTGGGACCGGTGAGCAATGTGATTGTGGTCCGAACCGATGGATCGATTGTGCCAACGCCGCGTGTCTTGGAGGATGATGAAGAAAATATTCTAA</canonical>
            <polymorphic>CGGCTACGCCCAATGTTTTGATATAAGAAAAACCCGAACGACAGTGGTGGCTGGCTCCCACTGTCCTCATTGTGGCGCAATGGTAGCAGCTCTGTCTTTCAATCTGGAACTTGTTGGTTCGACTCCCACCACCTCTCAATCTGTTTTTGCTTTCTTTTTTAATCAATTAAGATTTAATTCAGGCTCAACAGTCAACGTTCAAGCAGATTCCCAGAGGAACCCATACCGAAATCTGCACCTGTCAAGTCCAAAACTCCAGAAGTTCCGAAATCTGTGAAATTTTCGGAACCAGTCAAAAAAATAGCTTCAAGAGCGAGACCGATTCAGAAATCTGATGCTCAGATTCAAACTGATCAGTTGGTGTTGAAGAAGGATGAGCAAGAAGAGAATTTGAAGAAAACTAGTGGGAGGAGTGAGAAAATTGTAAGTTTTTAATTTGAGCCTAAATAACTCGGTTCCTGTGAAAGATATCAAGAAGTAGTAAACTGCCAAAATATTGRAAATTTTATAACAAACATTTTGTTAGTTAACCACTTTTTGATATCTCTTGTAAAAACTGAGATAATAAAGCTCAACGTAAGCTACTTGGTCGGCGTCACCACTATGCTTGCACTTTAAGCTCTACTATCTAGATTTCTGTAAGAGATTTCAAAAAATAGTTAACTGATGAAATATAGGAAAATTCAAGGAAAACATTTTGTTTGTTGAACACTTTTTGATATCCTACGAAATGAGATATATGGGCTCTGAATTTATTTTATATCTAAAAAATTCAAGACCGCTGAAACTGGAACCAACTGTCGATTGCTGATCACTCCAAGAGTAGAAGAGGATTTTTCTGGTAAATCCTCTCCACTTTTATCACCAATCAGTACAGTACCCTCGGATATTAGTGAAGGAGAAGTCTTGGGACCGGTGAGCAATGTGATTGTGGTCCGAACCGATGGATCGATTGTGCCAACGCCGCGTGTCTTGGAGGATGATGAAGAAAATATTCTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>BstXI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAGGAGTGAGAAAATTGTAAGT</pcr_primer_p1>
		<pcr_primer_p2>ACAGTTGGTTCCAGTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>GGAGGAGTGAGAAAATTGTAAGTTTTTAATTTGAGCCTAAATAACTCGGTTCCTGTGAAAGATATCAAGAAGTAGTAAACTGCCAAAATATTGGAAATTTTATAACAAACATTTTGTTAGTTAACCACTTTTTGATATCTCTTGTAAAAACTGAGATAATAAAGCTCAACGTAAGCTACTTGGTCGGCGTCACCACTATGCTTGCACTTTAAGCTCTACTATCTAGATTTCTGTAAGAGATTTCAAAAAATAGTTAACTGATGAAATATAGGAAAATTCAAGGAAAACATTTTGTTTGTTGAACACTTTTTGATATCCTACGAAATGAGATATATGGGCTCTGAATTTATTTTATATCTAAAAAATTCAAGACCGCTGAAACTGGAACCAACTGT</canonical_amplicon>
		<polymorphic_amplicon>GGAGGAGTGAGAAAATTGTAAGTTTTTAATTTGAGCCTAAATAACTCGGTTCCTGTGAAAGATATCAAGAAGTAGTAAACTGCCAAAATATTGRAAATTTTATAACAAACATTTTGTTAGTTAACCACTTTTTGATATCTCTTGTAAAAACTGAGATAATAAAGCTCAACGTAAGCTACTTGGTCGGCGTCACCACTATGCTTGCACTTTAAGCTCTACTATCTAGATTTCTGTAAGAGATTTCAAAAAATAGTTAACTGATGAAATATAGGAAAATTCAAGGAAAACATTTTGTTTGTTGAACACTTTTTGATATCCTACGAAATGAGATATATGGGCTCTGAATTTATTTTATATCTAAAAAATTCAAGACCGCTGAAACTGGAACCAACTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35541</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>652845</contig_pos>
        <strand>+</strand>
        <context>tcttgtaaaa[C/G]ctgagataat</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTATAACAAACATTTTGTTAGTTAACCACTTTTTGATATCTCTTGTAAAA</left_flank>
        <right_flank>CTGAGATAATAAAGCTCAACGTAAGCTACTTGGTCGGCGTCACCACTATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCACTGTCCTCATTGTGGCGCAATGGTAGCAGCTCTGTCTTTCAATCTGGAACTTGTTGGTTCGACTCCCACCACCTCTCAATCTGTTTTTGCTTTCTTTTTTAATCAATTAAGATTTAATTCAGGCTCAACAGTCAACGTTCAAGCAGATTCCCAGAGGAACCCATACCGAAATCTGCACCTGTCAAGTCCAAAACTCCAGAAGTTCCGAAATCTGTGAAATTTTCGGAACCAGTCAAAAAAATAGCTTCAAGAGCGAGACCGATTCAGAAATCTGATGCTCAGATTCAAACTGATCAGTTGGTGTTGAAGAAGGATGAGCAAGAAGAGAATTTGAAGAAAACTAGTGGGAGGAGTGAGAAAATTGTAAGTTTTTAATTTGAGCCTAAATAACTCGGTTCCTGTGAAAGATATCAAGAAGTAGTAAACTGCCAAAATATTGGAAATTTTATAACAAACATTTTGTTAGTTAACCACTTTTTGATATCTCTTGTAAAAACTGAGATAATAAAGCTCAACGTAAGCTACTTGGTCGGCGTCACCACTATGCTTGCACTTTAAGCTCTACTATCTAGATTTCTGTAAGAGATTTCAAAAAATAGTTAACTGATGAAATATAGGAAAATTCAAGGAAAACATTTTGTTTGTTGAACACTTTTTGATATCCTACGAAATGAGATATATGGGCTCTGAATTTATTTTATATCTAAAAAATTCAAGACCGCTGAAACTGGAACCAACTGTCGATTGCTGATCACTCCAAGAGTAGAAGAGGATTTTTCTGGTAAATCCTCTCCACTTTTATCACCAATCAGTACAGTACCCTCGGATATTAGTGAAGGAGAAGTCTTGGGACCGGTGAGCAATGTGATTGTGGTCCGAACCGATGGATCGATTGTGCCAACGCCGCGTGTCTTGGAGGATGATGAAGAAAATATTCTAATTGCTAAATCGGTTAGCCCGTTTGGTGTGGCTGAAATTGATATGTCTATTTCATCG</canonical>
            <polymorphic>CCCACTGTCCTCATTGTGGCGCAATGGTAGCAGCTCTGTCTTTCAATCTGGAACTTGTTGGTTCGACTCCCACCACCTCTCAATCTGTTTTTGCTTTCTTTTTTAATCAATTAAGATTTAATTCAGGCTCAACAGTCAACGTTCAAGCAGATTCCCAGAGGAACCCATACCGAAATCTGCACCTGTCAAGTCCAAAACTCCAGAAGTTCCGAAATCTGTGAAATTTTCGGAACCAGTCAAAAAAATAGCTTCAAGAGCGAGACCGATTCAGAAATCTGATGCTCAGATTCAAACTGATCAGTTGGTGTTGAAGAAGGATGAGCAAGAAGAGAATTTGAAGAAAACTAGTGGGAGGAGTGAGAAAATTGTAAGTTTTTAATTTGAGCCTAAATAACTCGGTTCCTGTGAAAGATATCAAGAAGTAGTAAACTGCCAAAATATTGGAAATTTTATAACAAACATTTTGTTAGTTAACCACTTTTTGATATCTCTTGTAAAASCTGAGATAATAAAGCTCAACGTAAGCTACTTGGTCGGCGTCACCACTATGCTTGCACTTTAAGCTCTACTATCTAGATTTCTGTAAGAGATTTCAAAAAATAGTTAACTGATGAAATATAGGAAAATTCAAGGAAAACATTTTGTTTGTTGAACACTTTTTGATATCCTACGAAATGAGATATATGGGCTCTGAATTTATTTTATATCTAAAAAATTCAAGACCGCTGAAACTGGAACCAACTGTCGATTGCTGATCACTCCAAGAGTAGAAGAGGATTTTTCTGGTAAATCCTCTCCACTTTTATCACCAATCAGTACAGTACCCTCGGATATTAGTGAAGGAGAAGTCTTGGGACCGGTGAGCAATGTGATTGTGGTCCGAACCGATGGATCGATTGTGCCAACGCCGCGTGTCTTGGAGGATGATGAAGAAAATATTCTAATTGCTAAATCGGTTAGCCCGTTTGGTGTGGCTGAAATTGATATGTCTATTTCATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGGAGTGAGAAAATTGTAAGT</pcr_primer_p1>
		<pcr_primer_p2>ACAGTTGGTTCCAGTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>GGAGGAGTGAGAAAATTGTAAGTTTTTAATTTGAGCCTAAATAACTCGGTTCCTGTGAAAGATATCAAGAAGTAGTAAACTGCCAAAATATTGGAAATTTTATAACAAACATTTTGTTAGTTAACCACTTTTTGATATCTCTTGTAAAAACTGAGATAATAAAGCTCAACGTAAGCTACTTGGTCGGCGTCACCACTATGCTTGCACTTTAAGCTCTACTATCTAGATTTCTGTAAGAGATTTCAAAAAATAGTTAACTGATGAAATATAGGAAAATTCAAGGAAAACATTTTGTTTGTTGAACACTTTTTGATATCCTACGAAATGAGATATATGGGCTCTGAATTTATTTTATATCTAAAAAATTCAAGACCGCTGAAACTGGAACCAACTGT</canonical_amplicon>
		<polymorphic_amplicon>GGAGGAGTGAGAAAATTGTAAGTTTTTAATTTGAGCCTAAATAACTCGGTTCCTGTGAAAGATATCAAGAAGTAGTAAACTGCCAAAATATTGGAAATTTTATAACAAACATTTTGTTAGTTAACCACTTTTTGATATCTCTTGTAAAASCTGAGATAATAAAGCTCAACGTAAGCTACTTGGTCGGCGTCACCACTATGCTTGCACTTTAAGCTCTACTATCTAGATTTCTGTAAGAGATTTCAAAAAATAGTTAACTGATGAAATATAGGAAAATTCAAGGAAAACATTTTGTTTGTTGAACACTTTTTGATATCCTACGAAATGAGATATATGGGCTCTGAATTTATTTTATATCTAAAAAATTCAAGACCGCTGAAACTGGAACCAACTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35542</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>662917</contig_pos>
        <strand>+</strand>
        <context>ACAAGTTTGT[A/C]TTAYCTGTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGT</left_flank>
        <right_flank>TTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACCATATTTCGATGAGACAAAAATTAACTGTCATAGGAATCTATAGAGCTTTAAGAAAAGCTAAAGCTCTTAGTGATGCGTCGTGGAAAACATTTGTGAATTTTAGAATGCAAAATAGCATTGAAAAATATACGATGTGTGGAGGCCATTTAACAGATGAATGTGACCGGGAGTCAATCCACTAATCTCTCGGAAACAACAACTACTTCTCAGCTGTCATTAGCCAGGCAATCGTTAAAGCGAAAAATCGATGCCAGAAAAATAGGCTCTGTTGCTAAATGATCTTCTCATAATACAAGCAATGATTTGTCGTCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTT</canonical>
            <polymorphic>CAACCATATTTCGATGAGACAAAAATTAACTGTCATAGGAATCTATAGAGCTTTAAGAAAAGCTAAAGCTCTTAGTGATGCGTCGTGGAAAACATTTGTGAATTTTAGAATGCAAAATAGCATTGAAAAATATACGATGTGTGGAGGCCATTTAACAGATGAATGTGACCGGGAGTCAATCCACTAATCTCTCGGAAACAACAACTACTTCTCAGCTGTCATTAGCCAGGCAATCGTTAAAGCGAAAAATCGATGCCAGAAAAATAGGCTCTGTTGCTAAATGATCTTCTCATAATACAAGCAATGATTTGTCGTCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTMTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCCAATGAGGAGATAAAT</pcr_primer_p1>
		<pcr_primer_p2>GCATTTCTCTTGAATTCTGTG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGC</canonical_amplicon>
		<polymorphic_amplicon>CAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTMTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35543</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>662921</contig_pos>
        <strand>+</strand>
        <context>GTTTGTMTTA[C/T]CTGTGGGGCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTA</left_flank>
        <right_flank>CTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATATTTCGATGAGACAAAAATTAACTGTCATAGGAATCTATAGAGCTTTAAGAAAAGCTAAAGCTCTTAGTGATGCGTCGTGGAAAACATTTGTGAATTTTAGAATGCAAAATAGCATTGAAAAATATACGATGTGTGGAGGCCATTTAACAGATGAATGTGACCGGGAGTCAATCCACTAATCTCTCGGAAACAACAACTACTTCTCAGCTGTCATTAGCCAGGCAATCGTTAAAGCGAAAAATCGATGCCAGAAAAATAGGCTCTGTTGCTAAATGATCTTCTCATAATACAAGCAATGATTTGTCGTCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTT</canonical>
            <polymorphic>CATATTTCGATGAGACAAAAATTAACTGTCATAGGAATCTATAGAGCTTTAAGAAAAGCTAAAGCTCTTAGTGATGCGTCGTGGAAAACATTTGTGAATTTTAGAATGCAAAATAGCATTGAAAAATATACGATGTGTGGAGGCCATTTAACAGATGAATGTGACCGGGAGTCAATCCACTAATCTCTCGGAAACAACAACTACTTCTCAGCTGTCATTAGCCAGGCAATCGTTAAAGCGAAAAATCGATGCCAGAAAAATAGGCTCTGTTGCTAAATGATCTTCTCATAATACAAGCAATGATTTGTCGTCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTAYCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATCAAACTCCATTTTTCCTAA</pcr_primer_p1>
		<pcr_primer_p2>GCATTTCTCTTGAATTCTGTG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGC</canonical_amplicon>
		<polymorphic_amplicon>TTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTAYCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35544</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>662940</contig_pos>
        <strand>+</strand>
        <context>CCAAGATTAC[A/C]TCGTCTGTMA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTAC</left_flank>
        <right_flank>TCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTAACTGTCATAGGAATCTATAGAGCTTTAAGAAAAGCTAAAGCTCTTAGTGATGCGTCGTGGAAAACATTTGTGAATTTTAGAATGCAAAATAGCATTGAAAAATATACGATGTGTGGAGGCCATTTAACAGATGAATGTGACCGGGAGTCAATCCACTAATCTCTCGGAAACAACAACTACTTCTCAGCTGTCATTAGCCAGGCAATCGTTAAAGCGAAAAATCGATGCCAGAAAAATAGGCTCTGTTGCTAAATGATCTTCTCATAATACAAGCAATGATTTGTCGTCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCA</canonical>
            <polymorphic>AATTAACTGTCATAGGAATCTATAGAGCTTTAAGAAAAGCTAAAGCTCTTAGTGATGCGTCGTGGAAAACATTTGTGAATTTTAGAATGCAAAATAGCATTGAAAAATATACGATGTGTGGAGGCCATTTAACAGATGAATGTGACCGGGAGTCAATCCACTAATCTCTCGGAAACAACAACTACTTCTCAGCTGTCATTAGCCAGGCAATCGTTAAAGCGAAAAATCGATGCCAGAAAAATAGGCTCTGTTGCTAAATGATCTTCTCATAATACAAGCAATGATTTGTCGTCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACMTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATCAAACTCCATTTTTCCTAA</pcr_primer_p1>
		<pcr_primer_p2>GCATTTCTCTTGAATTCTGTG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGC</canonical_amplicon>
		<polymorphic_amplicon>TTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACMTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35545</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>662949</contig_pos>
        <strand>+</strand>
        <context>CMTCGTCTGT[A/C]AACTTGTATG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGT</left_flank>
        <right_flank>AACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATAGGAATCTATAGAGCTTTAAGAAAAGCTAAAGCTCTTAGTGATGCGTCGTGGAAAACATTTGTGAATTTTAGAATGCAAAATAGCATTGAAAAATATACGATGTGTGGAGGCCATTTAACAGATGAATGTGACCGGGAGTCAATCCACTAATCTCTCGGAAACAACAACTACTTCTCAGCTGTCATTAGCCAGGCAATCGTTAAAGCGAAAAATCGATGCCAGAAAAATAGGCTCTGTTGCTAAATGATCTTCTCATAATACAAGCAATGATTTGTCGTCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAG</canonical>
            <polymorphic>TCATAGGAATCTATAGAGCTTTAAGAAAAGCTAAAGCTCTTAGTGATGCGTCGTGGAAAACATTTGTGAATTTTAGAATGCAAAATAGCATTGAAAAATATACGATGTGTGGAGGCCATTTAACAGATGAATGTGACCGGGAGTCAATCCACTAATCTCTCGGAAACAACAACTACTTCTCAGCTGTCATTAGCCAGGCAATCGTTAAAGCGAAAAATCGATGCCAGAAAAATAGGCTCTGTTGCTAAATGATCTTCTCATAATACAAGCAATGATTTGTCGTCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTMAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATCAAACTCCATTTTTCCTAA</pcr_primer_p1>
		<pcr_primer_p2>GCATTTCTCTTGAATTCTGTG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGC</canonical_amplicon>
		<polymorphic_amplicon>TTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTMAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35546</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>662965</contig_pos>
        <strand>+</strand>
        <context>GTATGAAAGA[A/T]CAAATCACTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGA</left_flank>
        <right_flank>CAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTTTAAGAAAAGCTAAAGCTCTTAGTGATGCGTCGTGGAAAACATTTGTGAATTTTAGAATGCAAAATAGCATTGAAAAATATACGATGTGTGGAGGCCATTTAACAGATGAATGTGACCGGGAGTCAATCCACTAATCTCTCGGAAACAACAACTACTTCTCAGCTGTCATTAGCCAGGCAATCGTTAAAGCGAAAAATCGATGCCAGAAAAATAGGCTCTGTTGCTAAATGATCTTCTCATAATACAAGCAATGATTTGTCGTCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTT</canonical>
            <polymorphic>AGCTTTAAGAAAAGCTAAAGCTCTTAGTGATGCGTCGTGGAAAACATTTGTGAATTTTAGAATGCAAAATAGCATTGAAAAATATACGATGTGTGGAGGCCATTTAACAGATGAATGTGACCGGGAGTCAATCCACTAATCTCTCGGAAACAACAACTACTTCTCAGCTGTCATTAGCCAGGCAATCGTTAAAGCGAAAAATCGATGCCAGAAAAATAGGCTCTGTTGCTAAATGATCTTCTCATAATACAAGCAATGATTTGTCGTCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGAWCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>263 234 187 171 98 24 17 6</canonical_bands>
                <polymorphic_bands>361 234 187 171 24 17 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATCAAACTCCATTTTTCCTAA</pcr_primer_p1>
		<pcr_primer_p2>GCATTTCTCTTGAATTCTGTG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGC</canonical_amplicon>
		<polymorphic_amplicon>TTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGAWCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35547</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>662979</contig_pos>
        <strand>+</strand>
        <context>ATCACTGTCT[C/T]ACTCAYATCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCT</left_flank>
        <right_flank>ACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAAAGCTCTTAGTGATGCGTCGTGGAAAACATTTGTGAATTTTAGAATGCAAAATAGCATTGAAAAATATACGATGTGTGGAGGCCATTTAACAGATGAATGTGACCGGGAGTCAATCCACTAATCTCTCGGAAACAACAACTACTTCTCAGCTGTCATTAGCCAGGCAATCGTTAAAGCGAAAAATCGATGCCAGAAAAATAGGCTCTGTTGCTAAATGATCTTCTCATAATACAAGCAATGATTTGTCGTCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTT</canonical>
            <polymorphic>CTAAAGCTCTTAGTGATGCGTCGTGGAAAACATTTGTGAATTTTAGAATGCAAAATAGCATTGAAAAATATACGATGTGTGGAGGCCATTTAACAGATGAATGTGACCGGGAGTCAATCCACTAATCTCTCGGAAACAACAACTACTTCTCAGCTGTCATTAGCCAGGCAATCGTTAAAGCGAAAAATCGATGCCAGAAAAATAGGCTCTGTTGCTAAATGATCTTCTCATAATACAAGCAATGATTTGTCGTCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTYACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATCAAACTCCATTTTTCCTAA</pcr_primer_p1>
		<pcr_primer_p2>GCATTTCTCTTGAATTCTGTG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGC</canonical_amplicon>
		<polymorphic_amplicon>TTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTYACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35548</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>662985</contig_pos>
        <strand>+</strand>
        <context>GTCTYACTCA[C/T]ATCCACTCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCA</left_flank>
        <right_flank>ATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTTAGTGATGCGTCGTGGAAAACATTTGTGAATTTTAGAATGCAAAATAGCATTGAAAAATATACGATGTGTGGAGGCCATTTAACAGATGAATGTGACCGGGAGTCAATCCACTAATCTCTCGGAAACAACAACTACTTCTCAGCTGTCATTAGCCAGGCAATCGTTAAAGCGAAAAATCGATGCCAGAAAAATAGGCTCTGTTGCTAAATGATCTTCTCATAATACAAGCAATGATTTGTCGTCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTG</canonical>
            <polymorphic>CTCTTAGTGATGCGTCGTGGAAAACATTTGTGAATTTTAGAATGCAAAATAGCATTGAAAAATATACGATGTGTGGAGGCCATTTAACAGATGAATGTGACCGGGAGTCAATCCACTAATCTCTCGGAAACAACAACTACTTCTCAGCTGTCATTAGCCAGGCAATCGTTAAAGCGAAAAATCGATGCCAGAAAAATAGGCTCTGTTGCTAAATGATCTTCTCATAATACAAGCAATGATTTGTCGTCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCAYATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>326 144 98 94 78 46 42 41 24 16 14 13 12 10 9 9 7 6 6 3 2</canonical_bands>
                <polymorphic_bands>326 144 98 94 78 46 42 41 24 18 16 14 13 10 9 9 7 6 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATCAAACTCCATTTTTCCTAA</pcr_primer_p1>
		<pcr_primer_p2>GCATTTCTCTTGAATTCTGTG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGC</canonical_amplicon>
		<polymorphic_amplicon>TTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCAYATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35549</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>663026</contig_pos>
        <strand>+</strand>
        <context>GGCCGTCGTT[A/T]CAATTTGTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTT</left_flank>
        <right_flank>CAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGCAAAATAGCATTGAAAAATATACGATGTGTGGAGGCCATTTAACAGATGAATGTGACCGGGAGTCAATCCACTAATCTCTCGGAAACAACAACTACTTCTCAGCTGTCATTAGCCAGGCAATCGTTAAAGCGAAAAATCGATGCCAGAAAAATAGGCTCTGTTGCTAAATGATCTTCTCATAATACAAGCAATGATTTGTCGTCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTT</canonical>
            <polymorphic>ATGCAAAATAGCATTGAAAAATATACGATGTGTGGAGGCCATTTAACAGATGAATGTGACCGGGAGTCAATCCACTAATCTCTCGGAAACAACAACTACTTCTCAGCTGTCATTAGCCAGGCAATCGTTAAAGCGAAAAATCGATGCCAGAAAAATAGGCTCTGTTGCTAAATGATCTTCTCATAATACAAGCAATGATTTGTCGTCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTWCAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 441 55</canonical_bands>
                <polymorphic_bands>945 55</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATCAAACTCCATTTTTCCTAA</pcr_primer_p1>
		<pcr_primer_p2>GCATTTCTCTTGAATTCTGTG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGC</canonical_amplicon>
		<polymorphic_amplicon>TTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTWCAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35550</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>663048</contig_pos>
        <strand>+</strand>
        <context>TGGATGGAAT[C/T]GCRRTYAGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAAT</left_flank>
        <right_flank>GCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATACGATGTGTGGAGGCCATTTAACAGATGAATGTGACCGGGAGTCAATCCACTAATCTCTCGGAAACAACAACTACTTCTCAGCTGTCATTAGCCAGGCAATCGTTAAAGCGAAAAATCGATGCCAGAAAAATAGGCTCTGTTGCTAAATGATCTTCTCATAATACAAGCAATGATTTGTCGTCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAA</canonical>
            <polymorphic>ATACGATGTGTGGAGGCCATTTAACAGATGAATGTGACCGGGAGTCAATCCACTAATCTCTCGGAAACAACAACTACTTCTCAGCTGTCATTAGCCAGGCAATCGTTAAAGCGAAAAATCGATGCCAGAAAAATAGGCTCTGTTGCTAAATGATCTTCTCATAATACAAGCAATGATTTGTCGTCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATYGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>501 373 93 33</canonical_bands>
                <polymorphic_bands>594 373 33</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>216 161 126 115 102 57 44 43 33 30 29 21 17 6</canonical_bands>
                <polymorphic_bands>216 161 126 115 102 61 57 43 33 30 29 21 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATCAAACTCCATTTTTCCTAA</pcr_primer_p1>
		<pcr_primer_p2>GCATTTCTCTTGAATTCTGTG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGC</canonical_amplicon>
		<polymorphic_amplicon>TTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATYGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35551</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>663051</contig_pos>
        <strand>+</strand>
        <context>ATGGAATYGC[A/G]RTYAGCAACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGC</left_flank>
        <right_flank>ATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATGTGTGGAGGCCATTTAACAGATGAATGTGACCGGGAGTCAATCCACTAATCTCTCGGAAACAACAACTACTTCTCAGCTGTCATTAGCCAGGCAATCGTTAAAGCGAAAAATCGATGCCAGAAAAATAGGCTCTGTTGCTAAATGATCTTCTCATAATACAAGCAATGATTTGTCGTCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGA</canonical>
            <polymorphic>CGATGTGTGGAGGCCATTTAACAGATGAATGTGACCGGGAGTCAATCCACTAATCTCTCGGAAACAACAACTACTTCTCAGCTGTCATTAGCCAGGCAATCGTTAAAGCGAAAAATCGATGCCAGAAAAATAGGCTCTGTTGCTAAATGATCTTCTCATAATACAAGCAATGATTTGTCGTCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCRATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>498 376 93 33</canonical_bands>
                <polymorphic_bands>591 376 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATCAAACTCCATTTTTCCTAA</pcr_primer_p1>
		<pcr_primer_p2>GCATTTCTCTTGAATTCTGTG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGC</canonical_amplicon>
		<polymorphic_amplicon>TTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCRATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35552</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>663052</contig_pos>
        <strand>+</strand>
        <context>TGGAATYGCR[A/G]TYAGCAACGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCA</left_flank>
        <right_flank>TCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGTGTGGAGGCCATTTAACAGATGAATGTGACCGGGAGTCAATCCACTAATCTCTCGGAAACAACAACTACTTCTCAGCTGTCATTAGCCAGGCAATCGTTAAAGCGAAAAATCGATGCCAGAAAAATAGGCTCTGTTGCTAAATGATCTTCTCATAATACAAGCAATGATTTGTCGTCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAA</canonical>
            <polymorphic>GATGTGTGGAGGCCATTTAACAGATGAATGTGACCGGGAGTCAATCCACTAATCTCTCGGAAACAACAACTACTTCTCAGCTGTCATTAGCCAGGCAATCGTTAAAGCGAAAAATCGATGCCAGAAAAATAGGCTCTGTTGCTAAATGATCTTCTCATAATACAAGCAATGATTTGTCGTCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCARTCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATCAAACTCCATTTTTCCTAA</pcr_primer_p1>
		<pcr_primer_p2>GCATTTCTCTTGAATTCTGTG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGC</canonical_amplicon>
		<polymorphic_amplicon>TTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCARTCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35553</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>663054</contig_pos>
        <strand>+</strand>
        <context>GAATYGCRRT[C/T]AGCAACGATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAAT</left_flank>
        <right_flank>AGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGTGGAGGCCATTTAACAGATGAATGTGACCGGGAGTCAATCCACTAATCTCTCGGAAACAACAACTACTTCTCAGCTGTCATTAGCCAGGCAATCGTTAAAGCGAAAAATCGATGCCAGAAAAATAGGCTCTGTTGCTAAATGATCTTCTCATAATACAAGCAATGATTTGTCGTCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAAAT</canonical>
            <polymorphic>TGTGTGGAGGCCATTTAACAGATGAATGTGACCGGGAGTCAATCCACTAATCTCTCGGAAACAACAACTACTTCTCAGCTGTCATTAGCCAGGCAATCGTTAAAGCGAAAAATCGATGCCAGAAAAATAGGCTCTGTTGCTAAATGATCTTCTCATAATACAAGCAATGATTTGTCGTCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATYAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATCAAACTCCATTTTTCCTAA</pcr_primer_p1>
		<pcr_primer_p2>GGCATTTCTCTTGAATTCTG</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>TTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCC</canonical_amplicon>
		<polymorphic_amplicon>TTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATYAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35554</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>663072</contig_pos>
        <strand>+</strand>
        <context>ATCTACAGTC[A/G]ATTTTGCGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTC</left_flank>
        <right_flank>ATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGATGAATGTGACCGGGAGTCAATCCACTAATCTCTCGGAAACAACAACTACTTCTCAGCTGTCATTAGCCAGGCAATCGTTAAAGCGAAAAATCGATGCCAGAAAAATAGGCTCTGTTGCTAAATGATCTTCTCATAATACAAGCAATGATTTGTCGTCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAAATCAAATTCTTTTCTCTCTC</canonical>
            <polymorphic>CAGATGAATGTGACCGGGAGTCAATCCACTAATCTCTCGGAAACAACAACTACTTCTCAGCTGTCATTAGCCAGGCAATCGTTAAAGCGAAAAATCGATGCCAGAAAAATAGGCTCTGTTGCTAAATGATCTTCTCATAATACAAGCAATGATTTGTCGTCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCRATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAAATCAAATTCTTTTCTCTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>283 205 170 118 115 96 8 5</canonical_bands>
                <polymorphic_bands>488 170 118 115 96 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCTTCCTGTACCACTAGAGC</pcr_primer_p1>
		<pcr_primer_p2>TGATCTGATTCACCAAGTGAT</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>ACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCA</canonical_amplicon>
		<polymorphic_amplicon>ACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCRATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35555</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>663207</contig_pos>
        <strand>+</strand>
        <context>TGTCTGCTGA[A/G]ARCAGGGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGA</left_flank>
        <right_flank>AGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATAATACAAGCAATGATTTGTCGTCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAAATCAAATTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTATACTTTCTTAATCTTCGGTTTTAATCTTCGGTTTTAATGGAGGCGCGACAGCGCCTCCATCCAAAACTTTTAAATTCATTTCCATCATATCATTTCAACAGAAGG</canonical>
            <polymorphic>CATAATACAAGCAATGATTTGTCGTCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGARAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAAATCAAATTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTATACTTTCTTAATCTTCGGTTTTAATCTTCGGTTTTAATGGAGGCGCGACAGCGCCTCCATCCAAAACTTTTAAATTCATTTCCATCATATCATTTCAACAGAAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACAGAATTCAAGAGAAATG</pcr_primer_p1>
		<pcr_primer_p2>TATCCGAAACCAAATTGAGA</pcr_primer_p2>
		<pcr_amplicon_size>346</pcr_amplicon_size>
		<canonical_amplicon>CCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATA</canonical_amplicon>
		<polymorphic_amplicon>CCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGARAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35556</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>663209</contig_pos>
        <strand>+</strand>
        <context>TCTGCTGARA[A/G]CAGGGAATTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGA</left_flank>
        <right_flank>CAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATACAAGCAATGATTTGTCGTCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAAATCAAATTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTATACTTTCTTAATCTTCGGTTTTAATCTTCGGTTTTAATGGAGGCGCGACAGCGCCTCCATCCAAAACTTTTAAATTCATTTCCATCATATCATTTCAACAGAAGGCT</canonical>
            <polymorphic>TAATACAAGCAATGATTTGTCGTCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGARCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAAATCAAATTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTATACTTTCTTAATCTTCGGTTTTAATCTTCGGTTTTAATGGAGGCGCGACAGCGCCTCCATCCAAAACTTTTAAATTCATTTCCATCATATCATTTCAACAGAAGGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACAGAATTCAAGAGAAATG</pcr_primer_p1>
		<pcr_primer_p2>TATCCGAAACCAAATTGAGA</pcr_primer_p2>
		<pcr_amplicon_size>346</pcr_amplicon_size>
		<canonical_amplicon>CCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATA</canonical_amplicon>
		<polymorphic_amplicon>CCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGARCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35557</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>663221</contig_pos>
        <strand>+</strand>
        <context>AGGGAATTGA[A/G]AGCTGAAAGR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGA</left_flank>
        <right_flank>AGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATTTGTCGTCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAAATCAAATTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTATACTTTCTTAATCTTCGGTTTTAATCTTCGGTTTTAATGGAGGCGCGACAGCGCCTCCATCCAAAACTTTTAAATTCATTTCCATCATATCATTTCAACAGAAGGCTACAAAATTAGAA</canonical>
            <polymorphic>TGATTTGTCGTCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGARAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAAATCAAATTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTATACTTTCTTAATCTTCGGTTTTAATCTTCGGTTTTAATGGAGGCGCGACAGCGCCTCCATCCAAAACTTTTAAATTCATTTCCATCATATCATTTCAACAGAAGGCTACAAAATTAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGACTGATGGTTGCAGAG</pcr_primer_p1>
		<pcr_primer_p2>TATCCGAAACCAAATTGAGA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>AAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATA</canonical_amplicon>
		<polymorphic_amplicon>AAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGARAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35558</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>663231</contig_pos>
        <strand>+</strand>
        <context>RAGCTGAAAG[A/G]GATCACTTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAG</left_flank>
        <right_flank>GATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAAATCAAATTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTATACTTTCTTAATCTTCGGTTTTAATCTTCGGTTTTAATGGAGGCGCGACAGCGCCTCCATCCAAAACTTTTAAATTCATTTCCATCATATCATTTCAACAGAAGGCTACAAAATTAGAAGGTTCTCAAT</canonical>
            <polymorphic>TCTACCCAAGATAGTACTCCAGGTCGTCCTAGCAATTCGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGRGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAAATCAAATTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTATACTTTCTTAATCTTCGGTTTTAATCTTCGGTTTTAATGGAGGCGCGACAGCGCCTCCATCCAAAACTTTTAAATTCATTTCCATCATATCATTTCAACAGAAGGCTACAAAATTAGAAGGTTCTCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAGGACGAATCAACTGTC</pcr_primer_p1>
		<pcr_primer_p2>AGTATCCGAAACCAAATTGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACT</canonical_amplicon>
		<polymorphic_amplicon>CAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGRGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35559</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>663268</contig_pos>
        <strand>+</strand>
        <context>GAGAGACGAA[C/T]AMGAATTCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAA</left_flank>
        <right_flank>ACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAAATCAAATTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTATACTTTCTTAATCTTCGGTTTTAATCTTCGGTTTTAATGGAGGCGCGACAGCGCCTCCATCCAAAACTTTTAAATTCATTTCCATCATATCATTTCAACAGAAGGCTACAAAATTAGAAGGTTCTCAATGTCCCATTTTATTACTTGTTGCGAGACGAAGGAAGGG</canonical>
            <polymorphic>CGGGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAAYACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAAATCAAATTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTATACTTTCTTAATCTTCGGTTTTAATCTTCGGTTTTAATGGAGGCGCGACAGCGCCTCCATCCAAAACTTTTAAATTCATTTCCATCATATCATTTCAACAGAAGGCTACAAAATTAGAAGGTTCTCAATGTCCCATTTTATTACTTGTTGCGAGACGAAGGAAGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGACGAATCAACTGTCTG</pcr_primer_p1>
		<pcr_primer_p2>TTATCAGTATCCGAAACCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAA</canonical_amplicon>
		<polymorphic_amplicon>AAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAAYACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35560</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>663270</contig_pos>
        <strand>+</strand>
        <context>GAGACGAAYA[A/C]GAATTCGACC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATA</left_flank>
        <right_flank>GAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAAATCAAATTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTATACTTTCTTAATCTTCGGTTTTAATCTTCGGTTTTAATGGAGGCGCGACAGCGCCTCCATCCAAAACTTTTAAATTCATTTCCATCATATCATTTCAACAGAAGGCTACAAAATTAGAAGGTTCTCAATGTCCCATTTTATTACTTGTTGCGAGACGAAGGAAGGGGC</canonical>
            <polymorphic>GGAAAAAGACTTCGAGTCGAATCATCAAGCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATAMGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAAATCAAATTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTATACTTTCTTAATCTTCGGTTTTAATCTTCGGTTTTAATGGAGGCGCGACAGCGCCTCCATCCAAAACTTTTAAATTCATTTCCATCATATCATTTCAACAGAAGGCTACAAAATTAGAAGGTTCTCAATGTCCCATTTTATTACTTGTTGCGAGACGAAGGAAGGGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGACGAATCAACTGTCTG</pcr_primer_p1>
		<pcr_primer_p2>TTATCAGTATCCGAAACCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAA</canonical_amplicon>
		<polymorphic_amplicon>AAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATAMGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35561</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>663298</contig_pos>
        <strand>+</strand>
        <context>CGGACGGCCA[C/G]AACAYTAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCA</left_flank>
        <right_flank>AACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAAATCAAATTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTATACTTTCTTAATCTTCGGTTTTAATCTTCGGTTTTAATGGAGGCGCGACAGCGCCTCCATCCAAAACTTTTAAATTCATTTCCATCATATCATTTCAACAGAAGGCTACAAAATTAGAAGGTTCTCAATGTCCCATTTTATTACTTGTTGCGAGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCA</canonical>
            <polymorphic>GCTCATCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCASAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAAATCAAATTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTATACTTTCTTAATCTTCGGTTTTAATCTTCGGTTTTAATGGAGGCGCGACAGCGCCTCCATCCAAAACTTTTAAATTCATTTCCATCATATCATTTCAACAGAAGGCTACAAAATTAGAAGGTTCTCAATGTCCCATTTTATTACTTGTTGCGAGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGACGAATCAACTGTCTG</pcr_primer_p1>
		<pcr_primer_p2>TTATCAGTATCCGAAACCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAA</canonical_amplicon>
		<polymorphic_amplicon>AAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCASAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35562</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>663303</contig_pos>
        <strand>+</strand>
        <context>GGCCASAACA[C/T]TAATTATAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACA</left_flank>
        <right_flank>TAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAAATCAAATTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTATACTTTCTTAATCTTCGGTTTTAATCTTCGGTTTTAATGGAGGCGCGACAGCGCCTCCATCCAAAACTTTTAAATTCATTTCCATCATATCATTTCAACAGAAGGCTACAAAATTAGAAGGTTCTCAATGTCCCATTTTATTACTTGTTGCGAGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAG</canonical>
            <polymorphic>TCATCGCCATCAAATGCTTCTTCTCCTGAAAACGATGTTCAAGAGCCAGCCAATGAGGAGATAAATTATCAAACTCCATTTTTCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACAYTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAAATCAAATTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTATACTTTCTTAATCTTCGGTTTTAATCTTCGGTTTTAATGGAGGCGCGACAGCGCCTCCATCCAAAACTTTTAAATTCATTTCCATCATATCATTTCAACAGAAGGCTACAAAATTAGAAGGTTCTCAATGTCCCATTTTATTACTTGTTGCGAGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 443 57</canonical_bands>
                <polymorphic_bands>557 443</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>500 243 131 36 35 22 13 13 7</canonical_bands>
                <polymorphic_bands>535 243 131 36 22 13 13 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGACGAATCAACTGTCTG</pcr_primer_p1>
		<pcr_primer_p2>TTATCAGTATCCGAAACCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAA</canonical_amplicon>
		<polymorphic_amplicon>AAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACAYTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35563</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>663385</contig_pos>
        <strand>+</strand>
        <context>tCTCTTTTTA[C/T]CACCTGCCGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTA</left_flank>
        <right_flank>CACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAAATCAAATTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTATACTTTCTTAATCTTCGGTTTTAATCTTCGGTTTTAATGGAGGCGCGACAGCGCCTCCATCCAAAACTTTTAAATTCATTTCCATCATATCATTTCAACAGAAGGCTACAAAATTAGAAGGTTCTCAATGTCCCATTTTATTACTTGTTGCGAGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCGTAAAATTGCGAGCGAAGCGAGAATTAAAGAATTTCA</canonical>
            <polymorphic>TCCTAATCCAGTAATCTTTGAACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTAYCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAAATCAAATTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTATACTTTCTTAATCTTCGGTTTTAATCTTCGGTTTTAATGGAGGCGCGACAGCGCCTCCATCCAAAACTTTTAAATTCATTTCCATCATATCATTTCAACAGAAGGCTACAAAATTAGAAGGTTCTCAATGTCCCATTTTATTACTTGTTGCGAGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCGTAAAATTGCGAGCGAAGCGAGAATTAAAGAATTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCATAATATTTCTTTCTTTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGAATTTGATTTCGTTCATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAAATCAAATTCTT</canonical_amplicon>
		<polymorphic_amplicon>TCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTAYCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAAATCAAATTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35564</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>663406</contig_pos>
        <strand>+</strand>
        <context>TTTTTTCTGT[C/T]TGTCTCAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGT</left_flank>
        <right_flank>TGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAAATCAAATTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTATACTTTCTTAATCTTCGGTTTTAATCTTCGGTTTTAATGGAGGCGCGACAGCGCCTCCATCCAAAACTTTTAAATTCATTTCCATCATATCATTTCAACAGAAGGCTACAAAATTAGAAGGTTCTCAATGTCCCATTTTATTACTTGTTGCGAGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCGTAAAATTGCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTTCGGCAGAAT</canonical>
            <polymorphic>ACAAGTTTGTCTTATCTGTGGGGCCAAGATTACCTCGTCTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTYTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAAATCAAATTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTATACTTTCTTAATCTTCGGTTTTAATCTTCGGTTTTAATGGAGGCGCGACAGCGCCTCCATCCAAAACTTTTAAATTCATTTCCATCATATCATTTCAACAGAAGGCTACAAAATTAGAAGGTTCTCAATGTCCCATTTTATTACTTGTTGCGAGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCGTAAAATTGCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTTCGGCAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCATAATATTTCTTTCTTTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGAATTTGATTTCGTTCATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAAATCAAATTCTT</canonical_amplicon>
		<polymorphic_amplicon>TCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTYTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAAATCAAATTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35565</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>663444</contig_pos>
        <strand>+</strand>
        <context>AAGATCAGTT[A/G]TCGAGCATTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTT</left_flank>
        <right_flank>TCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAAATCAAATTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTATACTTTCTTAATCTTCGGTTTTAATCTTCGGTTTTAATGGAGGCGCGACAGCGCCTCCATCCAAAACTTTTAAATTCATTTCCATCATATCATTTCAACAGAAGGCTACAAAATTAGAAGGTTCTCAATGTCCCATTTTATTACTTGTTGCGAGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCGTAAAATTGCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGATAATTTTTTAACTTTCATTACGC</canonical>
            <polymorphic>CTGTCAACTTGTATGAAAGATCAAATCACTGTCTTACTCACATCCACTCTTCCTGTACCACTAGAGCAGCTGGCCGTCGTTACAATTTGTCTTTGGATGGAATTGCAATCAGCAACGATCTACAGTCGATTTTGCGTGCCACAGAATTCAAGAGAAATGCCGCAATGTACCAAACGGAGCTCACCGAAATCACTCGTGCATTGGACGCTGCCCGGCAAAGACTGATGGTTGCAGAGCAAAGGACGAATCAACTGTCTGCTGAGAGCAGGGAATTGAAAGCTGAAAGAGATCACTTGGTGAATCAGATCAACGCGAGAGACGAATACGAATTCGACCAACCCATCGGACGGCCAGAACATTAATTATAATTCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTRTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAAATCAAATTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTATACTTTCTTAATCTTCGGTTTTAATCTTCGGTTTTAATGGAGGCGCGACAGCGCCTCCATCCAAAACTTTTAAATTCATTTCCATCATATCATTTCAACAGAAGGCTACAAAATTAGAAGGTTCTCAATGTCCCATTTTATTACTTGTTGCGAGACGAAGGAAGGGGCCGGATTTAGGATGTGGAGTGTTTTTTCAAAAAGGCGAGCGAAGCGAGCCTGAAAGAATTTCATAACTTTCATTTCGGCGTAAAATTGCGAGCGAAGCGAGAATTAAAGAATTTCATAACTTTCATTTCGGCAGAATTTTCGAGCGAAGCGATAATTTTTTAACTTTCATTACGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCATAATATTTCTTTCTTTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGAATTTGATTTCGTTCATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTGTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAAATCAAATTCTT</canonical_amplicon>
		<polymorphic_amplicon>TCCATAATATTTCTTTCTTTTCTTTTAATTCTTCTAAATAAATGTATTAATATTTAAATTTTCTCTTTTTACCACCTGCCGATTTTTTCTGTCTGTCTCAATTTGGTTTCGGATACTGATAAGATCAGTTRTCGAGCATTCGATACGATCTTTGCTCCTTTGTTTTCTTTTGGATACATCCTATTTCATGATTCTCATAGTGCGCCACTTTTTCAATTTTACTTTGACGAATGAACGAAATCAAATTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35566</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>691440</contig_pos>
        <strand>+</strand>
        <context>TCCATTTTTA[A/G]GTCTGAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGTCAATGGCTAGTTTTTTGGATTTTCAGAGTCAAAATTTCCATTTTTA</left_flank>
        <right_flank>GTCTGAAATTCACTTTTTTTCAAGCCAAAAATGTATATTTTTCATCTGAA</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCGCGATAACGCCTAGTGCGCCCGGTTTAGCGTAAATCGACATTACCAAAAATTAAAAAATTAATTTTAAGGCTGAAAAAAACTCGATTTCTAGCAATTTAAAATCGAAAAATACAAATTTTGGGGTCTAAAAACTCAAAAATCGACCTAAAAAACACATTTCTCACATGAACTAATCGATTTTTCGGCAACAAATTCAGCGATTTTTCCACCAAATCCGTTCGATATCCCTTCGTCAGCAGCCTCTTTTTCAGCTCCTCCTGCTGCGTTTTTCCCAATTTCTCTGGAACATTTTCAGCCGATTTTTCAGTAGGCTTCATATGATTATTGTTGTTGTTCTGGAATGGTAACGGAGACGACGATGATGATGATGAAGGGGGCGGAGCTTGAGGGGGCGGAGTCGATGTGTTCCAGGGATTTGTGAGCATTAGGACCTGCAAAAAATGGGTGTCAATGGCTAGTTTTTTGGATTTTCAGAGTCAAAATTTCCATTTTTAAGTCTGAAATTCACTTTTTTTCAAGCCAAAAATGTATATTTTTCATCTGAAAATCGAGCGTTTTTTAGCACAAATTTGATATTTTTAGGTCCAAAAATGCCATTTTTAGCAACTAAAATTGAGCTTTTTGAGCTTAAAACAGTTCGTTCAAGGTCAAAATTCATATTTTTCGGCTCAAAATTGAGATTTTCGTGTTCGAAATCCACAATTTCGGAACCGAAATTCGTATTTTTTGGTTTGAAAAATGCTGATTTTCAAGTCGAAAAAGGTCATTTTCAGTTCTGAATTTCACATTTTTCCATCCAAAAATTCATATTTTTCAGTTCAAAATTGAGATTTTCGAGTCCTAAATCCGCCAATTTTGAGCTCAAAATTCAATTATTCTGATTTGAAAAATGCACATTTTCAGGTCCAAAAAGGCTCCAAATTTGAGATTTTTAGGTCCAAAATTTGCATTTTTTGAGTAGAAAATTTGCTTTTTTTAGCGTCATATTTCCAGTA</canonical>
            <polymorphic>CTCCGCGATAACGCCTAGTGCGCCCGGTTTAGCGTAAATCGACATTACCAAAAATTAAAAAATTAATTTTAAGGCTGAAAAAAACTCGATTTCTAGCAATTTAAAATCGAAAAATACAAATTTTGGGGTCTAAAAACTCAAAAATCGACCTAAAAAACACATTTCTCACATGAACTAATCGATTTTTCGGCAACAAATTCAGCGATTTTTCCACCAAATCCGTTCGATATCCCTTCGTCAGCAGCCTCTTTTTCAGCTCCTCCTGCTGCGTTTTTCCCAATTTCTCTGGAACATTTTCAGCCGATTTTTCAGTAGGCTTCATATGATTATTGTTGTTGTTCTGGAATGGTAACGGAGACGACGATGATGATGATGAAGGGGGCGGAGCTTGAGGGGGCGGAGTCGATGTGTTCCAGGGATTTGTGAGCATTAGGACCTGCAAAAAATGGGTGTCAATGGCTAGTTTTTTGGATTTTCAGAGTCAAAATTTCCATTTTTARGTCTGAAATTCACTTTTTTTCAAGCCAAAAATGTATATTTTTCATCTGAAAATCGAGCGTTTTTTAGCACAAATTTGATATTTTTAGGTCCAAAAATGCCATTTTTAGCAACTAAAATTGAGCTTTTTGAGCTTAAAACAGTTCGTTCAAGGTCAAAATTCATATTTTTCGGCTCAAAATTGAGATTTTCGTGTTCGAAATCCACAATTTCGGAACCGAAATTCGTATTTTTTGGTTTGAAAAATGCTGATTTTCAAGTCGAAAAAGGTCATTTTCAGTTCTGAATTTCACATTTTTCCATCCAAAAATTCATATTTTTCAGTTCAAAATTGAGATTTTCGAGTCCTAAATCCGCCAATTTTGAGCTCAAAATTCAATTATTCTGATTTGAAAAATGCACATTTTCAGGTCCAAAAAGGCTCCAAATTTGAGATTTTTAGGTCCAAAATTTGCATTTTTTGAGTAGAAAATTTGCTTTTTTTAGCGTCATATTTCCAGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>396 367 136 55 32 8 6</canonical_bands>
                <polymorphic_bands>532 367 55 32 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGTGAGCATTAGGACCTG</pcr_primer_p1>
		<pcr_primer_p2>AAAAATATGAATTTTGACCTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGTGAGCATTAGGACCTGCAAAAAATGGGTGTCAATGGCTAGTTTTTTGGATTTTCAGAGTCAAAATTTCCATTTTTAAGTCTGAAATTCACTTTTTTTCAAGCCAAAAATGTATATTTTTCATCTGAAAATCGAGCGTTTTTTAGCACAAATTTGATATTTTTAGGTCCAAAAATGCCATTTTTAGCAACTAAAATTGAGCTTTTTGAGCTTAAAACAGTTCGTTCAAGGTCAAAATTCATATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTGTGAGCATTAGGACCTGCAAAAAATGGGTGTCAATGGCTAGTTTTTTGGATTTTCAGAGTCAAAATTTCCATTTTTARGTCTGAAATTCACTTTTTTTCAAGCCAAAAATGTATATTTTTCATCTGAAAATCGAGCGTTTTTTAGCACAAATTTGATATTTTTAGGTCCAAAAATGCCATTTTTAGCAACTAAAATTGAGCTTTTTGAGCTTAAAACAGTTCGTTCAAGGTCAAAATTCATATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35567</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>691460</contig_pos>
        <strand>+</strand>
        <context>TCACTTTTTT[C/T]CAAGCCAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGATTTTCAGAGTCAAAATTTCCATTTTTAAGTCTGAAATTCACTTTTTT</left_flank>
        <right_flank>CAAGCCAAAAATGTATATTTTTCATCTGAAAATCGAGCGTTTTTTAGCAC</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCCCGGTTTAGCGTAAATCGACATTACCAAAAATTAAAAAATTAATTTTAAGGCTGAAAAAAACTCGATTTCTAGCAATTTAAAATCGAAAAATACAAATTTTGGGGTCTAAAAACTCAAAAATCGACCTAAAAAACACATTTCTCACATGAACTAATCGATTTTTCGGCAACAAATTCAGCGATTTTTCCACCAAATCCGTTCGATATCCCTTCGTCAGCAGCCTCTTTTTCAGCTCCTCCTGCTGCGTTTTTCCCAATTTCTCTGGAACATTTTCAGCCGATTTTTCAGTAGGCTTCATATGATTATTGTTGTTGTTCTGGAATGGTAACGGAGACGACGATGATGATGATGAAGGGGGCGGAGCTTGAGGGGGCGGAGTCGATGTGTTCCAGGGATTTGTGAGCATTAGGACCTGCAAAAAATGGGTGTCAATGGCTAGTTTTTTGGATTTTCAGAGTCAAAATTTCCATTTTTAAGTCTGAAATTCACTTTTTTTCAAGCCAAAAATGTATATTTTTCATCTGAAAATCGAGCGTTTTTTAGCACAAATTTGATATTTTTAGGTCCAAAAATGCCATTTTTAGCAACTAAAATTGAGCTTTTTGAGCTTAAAACAGTTCGTTCAAGGTCAAAATTCATATTTTTCGGCTCAAAATTGAGATTTTCGTGTTCGAAATCCACAATTTCGGAACCGAAATTCGTATTTTTTGGTTTGAAAAATGCTGATTTTCAAGTCGAAAAAGGTCATTTTCAGTTCTGAATTTCACATTTTTCCATCCAAAAATTCATATTTTTCAGTTCAAAATTGAGATTTTCGAGTCCTAAATCCGCCAATTTTGAGCTCAAAATTCAATTATTCTGATTTGAAAAATGCACATTTTCAGGTCCAAAAAGGCTCCAAATTTGAGATTTTTAGGTCCAAAATTTGCATTTTTTGAGTAGAAAATTTGCTTTTTTTAGCGTCATATTTCCAGTATTTCGAAGCTTATTTTTGAC</canonical>
            <polymorphic>CGCCCGGTTTAGCGTAAATCGACATTACCAAAAATTAAAAAATTAATTTTAAGGCTGAAAAAAACTCGATTTCTAGCAATTTAAAATCGAAAAATACAAATTTTGGGGTCTAAAAACTCAAAAATCGACCTAAAAAACACATTTCTCACATGAACTAATCGATTTTTCGGCAACAAATTCAGCGATTTTTCCACCAAATCCGTTCGATATCCCTTCGTCAGCAGCCTCTTTTTCAGCTCCTCCTGCTGCGTTTTTCCCAATTTCTCTGGAACATTTTCAGCCGATTTTTCAGTAGGCTTCATATGATTATTGTTGTTGTTCTGGAATGGTAACGGAGACGACGATGATGATGATGAAGGGGGCGGAGCTTGAGGGGGCGGAGTCGATGTGTTCCAGGGATTTGTGAGCATTAGGACCTGCAAAAAATGGGTGTCAATGGCTAGTTTTTTGGATTTTCAGAGTCAAAATTTCCATTTTTAAGTCTGAAATTCACTTTTTTYCAAGCCAAAAATGTATATTTTTCATCTGAAAATCGAGCGTTTTTTAGCACAAATTTGATATTTTTAGGTCCAAAAATGCCATTTTTAGCAACTAAAATTGAGCTTTTTGAGCTTAAAACAGTTCGTTCAAGGTCAAAATTCATATTTTTCGGCTCAAAATTGAGATTTTCGTGTTCGAAATCCACAATTTCGGAACCGAAATTCGTATTTTTTGGTTTGAAAAATGCTGATTTTCAAGTCGAAAAAGGTCATTTTCAGTTCTGAATTTCACATTTTTCCATCCAAAAATTCATATTTTTCAGTTCAAAATTGAGATTTTCGAGTCCTAAATCCGCCAATTTTGAGCTCAAAATTCAATTATTCTGATTTGAAAAATGCACATTTTCAGGTCCAAAAAGGCTCCAAATTTGAGATTTTTAGGTCCAAAATTTGCATTTTTTGAGTAGAAAATTTGCTTTTTTTAGCGTCATATTTCCAGTATTTCGAAGCTTATTTTTGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTGAGCATTAGGACCTG</pcr_primer_p1>
		<pcr_primer_p2>AAAAATATGAATTTTGACCTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGTGAGCATTAGGACCTGCAAAAAATGGGTGTCAATGGCTAGTTTTTTGGATTTTCAGAGTCAAAATTTCCATTTTTAAGTCTGAAATTCACTTTTTTTCAAGCCAAAAATGTATATTTTTCATCTGAAAATCGAGCGTTTTTTAGCACAAATTTGATATTTTTAGGTCCAAAAATGCCATTTTTAGCAACTAAAATTGAGCTTTTTGAGCTTAAAACAGTTCGTTCAAGGTCAAAATTCATATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTGTGAGCATTAGGACCTGCAAAAAATGGGTGTCAATGGCTAGTTTTTTGGATTTTCAGAGTCAAAATTTCCATTTTTAAGTCTGAAATTCACTTTTTTYCAAGCCAAAAATGTATATTTTTCATCTGAAAATCGAGCGTTTTTTAGCACAAATTTGATATTTTTAGGTCCAAAAATGCCATTTTTAGCAACTAAAATTGAGCTTTTTGAGCTTAAAACAGTTCGTTCAAGGTCAAAATTCATATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35568</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>691519</contig_pos>
        <strand>+</strand>
        <context>ACAAATTTGA[A/T]ATTTTTAGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATGTATATTTTTCATCTGAAAATCGAGCGTTTTTTAGCACAAATTTGA</left_flank>
        <right_flank>ATTTTTAGGTCCAAAAATGCCATTTTTAGCAACTAAAATTGAGCTTTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAACTCGATTTCTAGCAATTTAAAATCGAAAAATACAAATTTTGGGGTCTAAAAACTCAAAAATCGACCTAAAAAACACATTTCTCACATGAACTAATCGATTTTTCGGCAACAAATTCAGCGATTTTTCCACCAAATCCGTTCGATATCCCTTCGTCAGCAGCCTCTTTTTCAGCTCCTCCTGCTGCGTTTTTCCCAATTTCTCTGGAACATTTTCAGCCGATTTTTCAGTAGGCTTCATATGATTATTGTTGTTGTTCTGGAATGGTAACGGAGACGACGATGATGATGATGAAGGGGGCGGAGCTTGAGGGGGCGGAGTCGATGTGTTCCAGGGATTTGTGAGCATTAGGACCTGCAAAAAATGGGTGTCAATGGCTAGTTTTTTGGATTTTCAGAGTCAAAATTTCCATTTTTAAGTCTGAAATTCACTTTTTTTCAAGCCAAAAATGTATATTTTTCATCTGAAAATCGAGCGTTTTTTAGCACAAATTTGATATTTTTAGGTCCAAAAATGCCATTTTTAGCAACTAAAATTGAGCTTTTTGAGCTTAAAACAGTTCGTTCAAGGTCAAAATTCATATTTTTCGGCTCAAAATTGAGATTTTCGTGTTCGAAATCCACAATTTCGGAACCGAAATTCGTATTTTTTGGTTTGAAAAATGCTGATTTTCAAGTCGAAAAAGGTCATTTTCAGTTCTGAATTTCACATTTTTCCATCCAAAAATTCATATTTTTCAGTTCAAAATTGAGATTTTCGAGTCCTAAATCCGCCAATTTTGAGCTCAAAATTCAATTATTCTGATTTGAAAAATGCACATTTTCAGGTCCAAAAAGGCTCCAAATTTGAGATTTTTAGGTCCAAAATTTGCATTTTTTGAGTAGAAAATTTGCTTTTTTTAGCGTCATATTTCCAGTATTTCGAAGCTTATTTTTGACAGCTTCTGGTCCAATTTTTGTCTTTTTTGAGCCAAGAAAACGCATTTTTGAGTATTTTA</canonical>
            <polymorphic>AAAAACTCGATTTCTAGCAATTTAAAATCGAAAAATACAAATTTTGGGGTCTAAAAACTCAAAAATCGACCTAAAAAACACATTTCTCACATGAACTAATCGATTTTTCGGCAACAAATTCAGCGATTTTTCCACCAAATCCGTTCGATATCCCTTCGTCAGCAGCCTCTTTTTCAGCTCCTCCTGCTGCGTTTTTCCCAATTTCTCTGGAACATTTTCAGCCGATTTTTCAGTAGGCTTCATATGATTATTGTTGTTGTTCTGGAATGGTAACGGAGACGACGATGATGATGATGAAGGGGGCGGAGCTTGAGGGGGCGGAGTCGATGTGTTCCAGGGATTTGTGAGCATTAGGACCTGCAAAAAATGGGTGTCAATGGCTAGTTTTTTGGATTTTCAGAGTCAAAATTTCCATTTTTAAGTCTGAAATTCACTTTTTTTCAAGCCAAAAATGTATATTTTTCATCTGAAAATCGAGCGTTTTTTAGCACAAATTTGAWATTTTTAGGTCCAAAAATGCCATTTTTAGCAACTAAAATTGAGCTTTTTGAGCTTAAAACAGTTCGTTCAAGGTCAAAATTCATATTTTTCGGCTCAAAATTGAGATTTTCGTGTTCGAAATCCACAATTTCGGAACCGAAATTCGTATTTTTTGGTTTGAAAAATGCTGATTTTCAAGTCGAAAAAGGTCATTTTCAGTTCTGAATTTCACATTTTTCCATCCAAAAATTCATATTTTTCAGTTCAAAATTGAGATTTTCGAGTCCTAAATCCGCCAATTTTGAGCTCAAAATTCAATTATTCTGATTTGAAAAATGCACATTTTCAGGTCCAAAAAGGCTCCAAATTTGAGATTTTTAGGTCCAAAATTTGCATTTTTTGAGTAGAAAATTTGCTTTTTTTAGCGTCATATTTCCAGTATTTCGAAGCTTATTTTTGACAGCTTCTGGTCCAATTTTTGTCTTTTTTGAGCCAAGAAAACGCATTTTTGAGTATTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTGAGCATTAGGACCTG</pcr_primer_p1>
		<pcr_primer_p2>AAAAATATGAATTTTGACCTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGTGAGCATTAGGACCTGCAAAAAATGGGTGTCAATGGCTAGTTTTTTGGATTTTCAGAGTCAAAATTTCCATTTTTAAGTCTGAAATTCACTTTTTTTCAAGCCAAAAATGTATATTTTTCATCTGAAAATCGAGCGTTTTTTAGCACAAATTTGATATTTTTAGGTCCAAAAATGCCATTTTTAGCAACTAAAATTGAGCTTTTTGAGCTTAAAACAGTTCGTTCAAGGTCAAAATTCATATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTGTGAGCATTAGGACCTGCAAAAAATGGGTGTCAATGGCTAGTTTTTTGGATTTTCAGAGTCAAAATTTCCATTTTTAAGTCTGAAATTCACTTTTTTTCAAGCCAAAAATGTATATTTTTCATCTGAAAATCGAGCGTTTTTTAGCACAAATTTGAWATTTTTAGGTCCAAAAATGCCATTTTTAGCAACTAAAATTGAGCTTTTTGAGCTTAAAACAGTTCGTTCAAGGTCAAAATTCATATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35569</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>692324</contig_pos>
        <strand>+</strand>
        <context>TTTTGGGCTA[A/C]AAATCTACCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCGTGGTTTTTATGTCCGAATCAGGCTAGAAATTGAGCATTTTTGGGCTA</left_flank>
        <right_flank>AAATCTACCAAATTTAGGAGCAAAATTGGCTTTTTTTGCTCCGAAACTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTGAAAAATGCACATTTTCAGGTCCAAAAAGGCTCCAAATTTGAGATTTTTAGGTCCAAAATTTGCATTTTTTGAGTAGAAAATTTGCTTTTTTTAGCGTCATATTTCCAGTATTTCGAAGCTTATTTTTGACAGCTTCTGGTCCAATTTTTGTCTTTTTTGAGCCAAGAAAACGCATTTTTGAGTATTTTAAGCCATTTTTCTCACCTCCTGCAACGCTTTCTTATCATCCAGAGCCAAAATTTGCATATCATCAAAAACGTTATTCGTCGATTCGAATTCGTGAAGTGAGTGTGGCATGGATACGGTATTCGGTGTCGTTGGATTCGCCGCCGTTCGTATTGAGGGGGCAGAGTTAACGGGACATGGGACGAGAACGTTCTGGAAGAAAAGTATAGAATTTTGGTTGAAAATTGGCATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATGTCCGAATCAGGCTAGAAATTGAGCATTTTTGGGCTACAAATCTACCAAATTTAGGAGCAAAATTGGCTTTTTTTGCTCCGAAACTCACTTTTTTAGCTGGATTTTGAGATTTTTAGCGTCTAATTTCGTATTTTTAGGTCCAAAATAGTATTTTTAGAGCTCAAATCAATTGGATTTTCGGTCGAAAATGCACTATTTTTGATCTAAAAATTGTGAATTCTCAGAAGCCGAAATTCAGATTTTCAATCCAAAATTGGAAATTTTTCCTTCTGGAAAAAGTAATAAATTTGAGTAGAAATTTGTATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAAAAGTGAGCCGAAATCGATATTTTTATGTGAAAAATCCATATTCTGGGCTGAAAATCTAGAATTTTTTAGTTAAAAAATTACAAAATTTAGGAGCAAAACTCCATTTTTTAAGCTCGATTTTGAGATTTTTAGGTCCAAAATCAAGTATTTTAA</canonical>
            <polymorphic>GATTTGAAAAATGCACATTTTCAGGTCCAAAAAGGCTCCAAATTTGAGATTTTTAGGTCCAAAATTTGCATTTTTTGAGTAGAAAATTTGCTTTTTTTAGCGTCATATTTCCAGTATTTCGAAGCTTATTTTTGACAGCTTCTGGTCCAATTTTTGTCTTTTTTGAGCCAAGAAAACGCATTTTTGAGTATTTTAAGCCATTTTTCTCACCTCCTGCAACGCTTTCTTATCATCCAGAGCCAAAATTTGCATATCATCAAAAACGTTATTCGTCGATTCGAATTCGTGAAGTGAGTGTGGCATGGATACGGTATTCGGTGTCGTTGGATTCGCCGCCGTTCGTATTGAGGGGGCAGAGTTAACGGGACATGGGACGAGAACGTTCTGGAAGAAAAGTATAGAATTTTGGTTGAAAATTGGCATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATGTCCGAATCAGGCTAGAAATTGAGCATTTTTGGGCTAMAAATCTACCAAATTTAGGAGCAAAATTGGCTTTTTTTGCTCCGAAACTCACTTTTTTAGCTGGATTTTGAGATTTTTAGCGTCTAATTTCGTATTTTTAGGTCCAAAATAGTATTTTTAGAGCTCAAATCAATTGGATTTTCGGTCGAAAATGCACTATTTTTGATCTAAAAATTGTGAATTCTCAGAAGCCGAAATTCAGATTTTCAATCCAAAATTGGAAATTTTTCCTTCTGGAAAAAGTAATAAATTTGAGTAGAAATTTGTATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAAAAGTGAGCCGAAATCGATATTTTTATGTGAAAAATCCATATTCTGGGCTGAAAATCTAGAATTTTTTAGTTAAAAAATTACAAAATTTAGGAGCAAAACTCCATTTTTTAAGCTCGATTTTGAGATTTTTAGGTCCAAAATCAAGTATTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTCTGGAAGAAAAGTATAGAA</pcr_primer_p1>
		<pcr_primer_p2>CTATTTTGGACCTAAAAATACGA</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>CGTTCTGGAAGAAAAGTATAGAATTTTGGTTGAAAATTGGCATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATGTCCGAATCAGGCTAGAAATTGAGCATTTTTGGGCTACAAATCTACCAAATTTAGGAGCAAAATTGGCTTTTTTTGCTCCGAAACTCACTTTTTTAGCTGGATTTTGAGATTTTTAGCGTCTAATTTCGTATTTTTAGGTCCAAAATAG</canonical_amplicon>
		<polymorphic_amplicon>CGTTCTGGAAGAAAAGTATAGAATTTTGGTTGAAAATTGGCATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATGTCCGAATCAGGCTAGAAATTGAGCATTTTTGGGCTAMAAATCTACCAAATTTAGGAGCAAAATTGGCTTTTTTTGCTCCGAAACTCACTTTTTTAGCTGGATTTTGAGATTTTTAGCGTCTAATTTCGTATTTTTAGGTCCAAAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35570</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>692664</contig_pos>
        <strand>+</strand>
        <context>AATTTTTTAG[A/T]AAAAAAAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAATCGTGGTTTTTATCCGAATCCGGCTAAAAAAGCGGAATTTTTTAG</left_flank>
        <right_flank>AAAAAAAAAGTGAGCCGAAATCGATATTTTTATGTGAAAAATCCATATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTATTGAGGGGGCAGAGTTAACGGGACATGGGACGAGAACGTTCTGGAAGAAAAGTATAGAATTTTGGTTGAAAATTGGCATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATGTCCGAATCAGGCTAGAAATTGAGCATTTTTGGGCTACAAATCTACCAAATTTAGGAGCAAAATTGGCTTTTTTTGCTCCGAAACTCACTTTTTTAGCTGGATTTTGAGATTTTTAGCGTCTAATTTCGTATTTTTAGGTCCAAAATAGTATTTTTAGAGCTCAAATCAATTGGATTTTCGGTCGAAAATGCACTATTTTTGATCTAAAAATTGTGAATTCTCAGAAGCCGAAATTCAGATTTTCAATCCAAAATTGGAAATTTTTCCTTCTGGAAAAAGTAATAAATTTGAGTAGAAATTTGTATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAAAAGTGAGCCGAAATCGATATTTTTATGTGAAAAATCCATATTCTGGGCTGAAAATCTAGAATTTTTTAGTTAAAAAATTACAAAATTTAGGAGCAAAACTCCATTTTTTAAGCTCGATTTTGAGATTTTTAGGTCCAAAATCAAGTATTTTAAAGTATAAAATGTGTATTTTTAGAGAATCGGTGGATTTTTGGTCTAAAATGCACTATTTTAGATCTAAAAATTGTGAATTTAGAAGCCGAAATTCCGATTTTCAGGCCAAAGTTGGACATTTTTCCTTCTGGAAAAATTAGTGAATTTGGGTAGAAATTTGTATTTTCAGAGTTGAGAATGAGCTAAAAATCGTGTTTTTTAGGTCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAGTGAGCTACAAATCGTATTTTTCAGGTATGGATCCGGCTAGAAATTGAGCATTTTTGGGCTCAAAATTTACCAAATTTAAGAGCAAAACTTTATTTT</canonical>
            <polymorphic>CGTATTGAGGGGGCAGAGTTAACGGGACATGGGACGAGAACGTTCTGGAAGAAAAGTATAGAATTTTGGTTGAAAATTGGCATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATGTCCGAATCAGGCTAGAAATTGAGCATTTTTGGGCTACAAATCTACCAAATTTAGGAGCAAAATTGGCTTTTTTTGCTCCGAAACTCACTTTTTTAGCTGGATTTTGAGATTTTTAGCGTCTAATTTCGTATTTTTAGGTCCAAAATAGTATTTTTAGAGCTCAAATCAATTGGATTTTCGGTCGAAAATGCACTATTTTTGATCTAAAAATTGTGAATTCTCAGAAGCCGAAATTCAGATTTTCAATCCAAAATTGGAAATTTTTCCTTCTGGAAAAAGTAATAAATTTGAGTAGAAATTTGTATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGWAAAAAAAAAGTGAGCCGAAATCGATATTTTTATGTGAAAAATCCATATTCTGGGCTGAAAATCTAGAATTTTTTAGTTAAAAAATTACAAAATTTAGGAGCAAAACTCCATTTTTTAAGCTCGATTTTGAGATTTTTAGGTCCAAAATCAAGTATTTTAAAGTATAAAATGTGTATTTTTAGAGAATCGGTGGATTTTTGGTCTAAAATGCACTATTTTAGATCTAAAAATTGTGAATTTAGAAGCCGAAATTCCGATTTTCAGGCCAAAGTTGGACATTTTTCCTTCTGGAAAAATTAGTGAATTTGGGTAGAAATTTGTATTTTCAGAGTTGAGAATGAGCTAAAAATCGTGTTTTTTAGGTCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAGTGAGCTACAAATCGTATTTTTCAGGTATGGATCCGGCTAGAAATTGAGCATTTTTGGGCTCAAAATTTACCAAATTTAAGAGCAAAACTTTATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCTTCTGGAAAAAGTAATAA</pcr_primer_p1>
		<pcr_primer_p2>AAATCTCAAAATCGAGCTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCCTTCTGGAAAAAGTAATAAATTTGAGTAGAAATTTGTATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGAAAAAAAAAAGTGAGCCGAAATCGATATTTTTATGTGAAAAATCCATATTCTGGGCTGAAAATCTAGAATTTTTTAGTTAAAAAATTACAAAATTTAGGAGCAAAACTCCATTTTTTAAGCTCGATTTTGAGATTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCCTTCTGGAAAAAGTAATAAATTTGAGTAGAAATTTGTATTTTTAGAGTTAAAAATGAGCTAAAAATCGTGGTTTTTATCCGAATCCGGCTAAAAAAGCGGAATTTTTTAGWAAAAAAAAAGTGAGCCGAAATCGATATTTTTATGTGAAAAATCCATATTCTGGGCTGAAAATCTAGAATTTTTTAGTTAAAAAATTACAAAATTTAGGAGCAAAACTCCATTTTTTAAGCTCGATTTTGAGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35571</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>741365</contig_pos>
        <strand></strand>
        <context>TAATCATTTA[T/C]GTTCTTGTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCGAAAATCAATCATCTTTCCAGATATATTCAACTGGAAATAATCATTTA</left_flank>
        <right_flank>GTTCTTGTCCAATTTGTCAATTTTCACAATTTTTTCCGAACTGGATTTGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTTGTCAATTGTCCTAAAAATTAGCAAGATTTTTATCTAAAATAGAGTTTCAACAAATTTCTATAAAATTGTGGAGTCGCAGAATATTTTCCACTGAAAAAATACGGAAATTTTCTGATTTCAGAACACATTTTGAAGGGGTGTCCTTTTTCACAGAGGGCCCTTCTATTACGGGAGCCCTTCTATTACAGGGGGGCCCTTCTATTTTTCCAAGCCCCTCTCGGAGGGCCCTTCTATTAAAGGGGCCCTTCTATTAGAGGAGCCCTACTATTAAAGGGGCCCTTCTAATACAGGTTTTACGGTATTCCAAAAATTTCTGAAAATTCAAAATTGCAAACATTTTTAACTCTCTAATATTTTTTCGAATTTTTCTTTGTTTTCATGTAAATCTACATGATTTTCAGCACAAAACCACCTTCAATTTTATAATTCATAGTCCAAACTCACCGAAAATCAATCATCTTTCCAGATATATTCAACTGGAAATAATCATTTATGTTCTTGTCCAATTTGTCAATTTTCACAATTTTTTCCGAACTGGATTTGTAGTAAATATACACCAATGGTTGTCCCCTTGGATTACATTCATATCGAATAGAATCAATCTTTTCGAATCTTGCGATTTGATACGATTTGATGAGTTTCTTCATATTTTTAGAGATAAAGGACATCATAAATATTTCAGAATAGTTCATACTGTGGAGTATCTCAATAAGAACCAAATGTGGATATTTGAATATTTTCATTTTTTTTAGTAGTTCTGAAAATAGTGAAGCTTGTAAGAATCGACGTGCATTTGAATACGGTAGTAAAAAAGTTCGGGGAAAATAAGGAAAAAACACAGTGTCTTCCAATAAAGATCAGAAAAACGAGAAAAGAAGAAAATCAATAAGAAACAAGGAACATCAAATGTGGCAGATGTTCTAGAGAGTCCTACGGGAAGGTTAATGCCTAGACTAGTCATCCCACTGTCCTACTAATGAGGATAGCCGCTGCT</canonical>
            <polymorphic>CAATTTGTCAATTGTCCTAAAAATTAGCAAGATTTTTATCTAAAATAGAGTTTCAACAAATTTCTATAAAATTGTGGAGTCGCAGAATATTTTCCACTGAAAAAATACGGAAATTTTCTGATTTCAGAACACATTTTGAAGGGGTGTCCTTTTTCACAGAGGGCCCTTCTATTACGGGAGCCCTTCTATTACAGGGGGGCCCTTCTATTTTTCCAAGCCCCTCTCGGAGGGCCCTTCTATTAAAGGGGCCCTTCTATTAGAGGAGCCCTACTATTAAAGGGGCCCTTCTAATACAGGTTTTACGGTATTCCAAAAATTTCTGAAAATTCAAAATTGCAAACATTTTTAACTCTCTAATATTTTTTCGAATTTTTCTTTGTTTTCATGTAAATCTACATGATTTTCAGCACAAAACCACCTTCAATTTTATAATTCATAGTCCAAACTCACCGAAAATCAATCATCTTTCCAGATATATTCAACTGGAAATAATCATTTAYGTTCTTGTCCAATTTGTCAATTTTCACAATTTTTTCCGAACTGGATTTGTAGTAAATATACACCAATGGTTGTCCCCTTGGATTACATTCATATCGAATAGAATCAATCTTTTCGAATCTTGCGATTTGATACGATTTGATGAGTTTCTTCATATTTTTAGAGATAAAGGACATCATAAATATTTCAGAATAGTTCATACTGTGGAGTATCTCAATAAGAACCAAATGTGGATATTTGAATATTTTCATTTTTTTTAGTAGTTCTGAAAATAGTGAAGCTTGTAAGAATCGACGTGCATTTGAATACGGTAGTAAAAAAGTTCGGGGAAAATAAGGAAAAAACACAGTGTCTTCCAATAAAGATCAGAAAAACGAGAAAAGAAGAAAATCAATAAGAAACAAGGAACATCAAATGTGGCAGATGTTCTAGAGAGTCCTACGGGAAGGTTAATGCCTAGACTAGTCATCCCACTGTCCTACTAATGAGGATAGCCGCTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAATTGCAAACATTTTTAAC</pcr_primer_p1>
		<pcr_primer_p2>GGACAACCATTGGTGTATATTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCAAAATTGCAAACATTTTTAACTCTCTAATATTTTTTCGAATTTTTCTTTGTTTTCATGTAAATCTACATGATTTTCAGCACAAAACCACCTTCAATTTTATAATTCATAGTCCAAACTCACCGAAAATCAATCATCTTTCCAGATATATTCAACTGGAAATAATCATTTATGTTCTTGTCCAATTTGTCAATTTTCACAATTTTTTCCGAACTGGATTTGTAGTAAATATACACCAATGGTTGTCC</canonical_amplicon>
		<polymorphic_amplicon>TCAAAATTGCAAACATTTTTAACTCTCTAATATTTTTTCGAATTTTTCTTTGTTTTCATGTAAATCTACATGATTTTCAGCACAAAACCACCTTCAATTTTATAATTCATAGTCCAAACTCACCGAAAATCAATCATCTTTCCAGATATATTCAACTGGAAATAATCATTTAYGTTCTTGTCCAATTTGTCAATTTTCACAATTTTTTCCGAACTGGATTTGTAGTAAATATACACCAATGGTTGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35572</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>741579</contig_pos>
        <strand></strand>
        <context>GGAGTATCTC[A/G]ATAAGAACCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAAAGGACATCATAAATATTTCAGAATAGTTCATACTGTGGAGTATCTC</left_flank>
        <right_flank>ATAAGAACCAAATGTGGATATTTGAATATTTTCATTTTTTTTAGTAGTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCCCCTCTCGGAGGGCCCTTCTATTAAAGGGGCCCTTCTATTAGAGGAGCCCTACTATTAAAGGGGCCCTTCTAATACAGGTTTTACGGTATTCCAAAAATTTCTGAAAATTCAAAATTGCAAACATTTTTAACTCTCTAATATTTTTTCGAATTTTTCTTTGTTTTCATGTAAATCTACATGATTTTCAGCACAAAACCACCTTCAATTTTATAATTCATAGTCCAAACTCACCGAAAATCAATCATCTTTCCAGATATATTCAACTGGAAATAATCATTTATGTTCTTGTCCAATTTGTCAATTTTCACAATTTTTTCCGAACTGGATTTGTAGTAAATATACACCAATGGTTGTCCCCTTGGATTACATTCATATCGAATAGAATCAATCTTTTCGAATCTTGCGATTTGATACGATTTGATGAGTTTCTTCATATTTTTAGAGATAAAGGACATCATAAATATTTCAGAATAGTTCATACTGTGGAGTATCTCAATAAGAACCAAATGTGGATATTTGAATATTTTCATTTTTTTTAGTAGTTCTGAAAATAGTGAAGCTTGTAAGAATCGACGTGCATTTGAATACGGTAGTAAAAAAGTTCGGGGAAAATAAGGAAAAAACACAGTGTCTTCCAATAAAGATCAGAAAAACGAGAAAAGAAGAAAATCAATAAGAAACAAGGAACATCAAATGTGGCAGATGTTCTAGAGAGTCCTACGGGAAGGTTAATGCCTAGACTAGTCATCCCACTGTCCTACTAATGAGGATAGCCGCTGCTGGCCCTGGCCGGGACCAAGTCCTAATTAAAGGTGGATTAGATGAATAGGGATGTCTTCTTGACCCAGGTGAGAGCACAAAAATGAGATACTGTAACCAAGCAGGAAGAAGAACTGGTCCCTTGGGTAGCATTCTAGGTGATATGCCAATATTCTGCCATCGGCCATGCAATCAGACGTTTTTCGTGGTTTTTGAATTCATGAACATTTAGGATT</canonical>
            <polymorphic>AAGCCCCTCTCGGAGGGCCCTTCTATTAAAGGGGCCCTTCTATTAGAGGAGCCCTACTATTAAAGGGGCCCTTCTAATACAGGTTTTACGGTATTCCAAAAATTTCTGAAAATTCAAAATTGCAAACATTTTTAACTCTCTAATATTTTTTCGAATTTTTCTTTGTTTTCATGTAAATCTACATGATTTTCAGCACAAAACCACCTTCAATTTTATAATTCATAGTCCAAACTCACCGAAAATCAATCATCTTTCCAGATATATTCAACTGGAAATAATCATTTATGTTCTTGTCCAATTTGTCAATTTTCACAATTTTTTCCGAACTGGATTTGTAGTAAATATACACCAATGGTTGTCCCCTTGGATTACATTCATATCGAATAGAATCAATCTTTTCGAATCTTGCGATTTGATACGATTTGATGAGTTTCTTCATATTTTTAGAGATAAAGGACATCATAAATATTTCAGAATAGTTCATACTGTGGAGTATCTCRATAAGAACCAAATGTGGATATTTGAATATTTTCATTTTTTTTAGTAGTTCTGAAAATAGTGAAGCTTGTAAGAATCGACGTGCATTTGAATACGGTAGTAAAAAAGTTCGGGGAAAATAAGGAAAAAACACAGTGTCTTCCAATAAAGATCAGAAAAACGAGAAAAGAAGAAAATCAATAAGAAACAAGGAACATCAAATGTGGCAGATGTTCTAGAGAGTCCTACGGGAAGGTTAATGCCTAGACTAGTCATCCCACTGTCCTACTAATGAGGATAGCCGCTGCTGGCCCTGGCCGGGACCAAGTCCTAATTAAAGGTGGATTAGATGAATAGGGATGTCTTCTTGACCCAGGTGAGAGCACAAAAATGAGATACTGTAACCAAGCAGGAAGAAGAACTGGTCCCTTGGGTAGCATTCTAGGTGATATGCCAATATTCTGCCATCGGCCATGCAATCAGACGTTTTTCGTGGTTTTTGAATTCATGAACATTTAGGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACGATTTGATGAGTTTCTTCAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTCGTTTTTCTGATCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACGATTTGATGAGTTTCTTCATATTTTTAGAGATAAAGGACATCATAAATATTTCAGAATAGTTCATACTGTGGAGTATCTCAATAAGAACCAAATGTGGATATTTGAATATTTTCATTTTTTTTAGTAGTTCTGAAAATAGTGAAGCTTGTAAGAATCGACGTGCATTTGAATACGGTAGTAAAAAAGTTCGGGGAAAATAAGGAAAAAACACAGTGTCTTCCAATAAAGATCAGAAAAACGAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TACGATTTGATGAGTTTCTTCATATTTTTAGAGATAAAGGACATCATAAATATTTCAGAATAGTTCATACTGTGGAGTATCTCRATAAGAACCAAATGTGGATATTTGAATATTTTCATTTTTTTTAGTAGTTCTGAAAATAGTGAAGCTTGTAAGAATCGACGTGCATTTGAATACGGTAGTAAAAAAGTTCGGGGAAAATAAGGAAAAAACACAGTGTCTTCCAATAAAGATCAGAAAAACGAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35573</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>741779</contig_pos>
        <strand></strand>
        <context>GAACATCAAA[T/A]GTGGCAGATG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCAGAAAAACGAGAAAAGAAGAAAATCAATAAGAAACAAGGAACATCAAA</left_flank>
        <right_flank>GTGGCAGATGTTCTAGAGAGTCCTACGGGAAGGTTAATGCCTAGACTAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACCTTCAATTTTATAATTCATAGTCCAAACTCACCGAAAATCAATCATCTTTCCAGATATATTCAACTGGAAATAATCATTTATGTTCTTGTCCAATTTGTCAATTTTCACAATTTTTTCCGAACTGGATTTGTAGTAAATATACACCAATGGTTGTCCCCTTGGATTACATTCATATCGAATAGAATCAATCTTTTCGAATCTTGCGATTTGATACGATTTGATGAGTTTCTTCATATTTTTAGAGATAAAGGACATCATAAATATTTCAGAATAGTTCATACTGTGGAGTATCTCAATAAGAACCAAATGTGGATATTTGAATATTTTCATTTTTTTTAGTAGTTCTGAAAATAGTGAAGCTTGTAAGAATCGACGTGCATTTGAATACGGTAGTAAAAAAGTTCGGGGAAAATAAGGAAAAAACACAGTGTCTTCCAATAAAGATCAGAAAAACGAGAAAAGAAGAAAATCAATAAGAAACAAGGAACATCAAATGTGGCAGATGTTCTAGAGAGTCCTACGGGAAGGTTAATGCCTAGACTAGTCATCCCACTGTCCTACTAATGAGGATAGCCGCTGCTGGCCCTGGCCGGGACCAAGTCCTAATTAAAGGTGGATTAGATGAATAGGGATGTCTTCTTGACCCAGGTGAGAGCACAAAAATGAGATACTGTAACCAAGCAGGAAGAAGAACTGGTCCCTTGGGTAGCATTCTAGGTGATATGCCAATATTCTGCCATCGGCCATGCAATCAGACGTTTTTCGTGGTTTTTGAATTCATGAACATTTAGGATTTTTTATAAAGTATTGGTATTTATCATCATATGAGATTTCAATTAGTTTTTCAAAGTTGACATGGCCCCATCGTTAGTCTAATTTGCAATTAGAGAAAATGGAAGCATTCAGGCAACAATAAAAATAGTGATTTAGAAGCAATTTATTTGGTGCTTGTAGAAAACTGATTGAAAAATAAAGAAATATTTTTAAAAAATTGG</canonical>
            <polymorphic>CCACCTTCAATTTTATAATTCATAGTCCAAACTCACCGAAAATCAATCATCTTTCCAGATATATTCAACTGGAAATAATCATTTATGTTCTTGTCCAATTTGTCAATTTTCACAATTTTTTCCGAACTGGATTTGTAGTAAATATACACCAATGGTTGTCCCCTTGGATTACATTCATATCGAATAGAATCAATCTTTTCGAATCTTGCGATTTGATACGATTTGATGAGTTTCTTCATATTTTTAGAGATAAAGGACATCATAAATATTTCAGAATAGTTCATACTGTGGAGTATCTCAATAAGAACCAAATGTGGATATTTGAATATTTTCATTTTTTTTAGTAGTTCTGAAAATAGTGAAGCTTGTAAGAATCGACGTGCATTTGAATACGGTAGTAAAAAAGTTCGGGGAAAATAAGGAAAAAACACAGTGTCTTCCAATAAAGATCAGAAAAACGAGAAAAGAAGAAAATCAATAAGAAACAAGGAACATCAAAWGTGGCAGATGTTCTAGAGAGTCCTACGGGAAGGTTAATGCCTAGACTAGTCATCCCACTGTCCTACTAATGAGGATAGCCGCTGCTGGCCCTGGCCGGGACCAAGTCCTAATTAAAGGTGGATTAGATGAATAGGGATGTCTTCTTGACCCAGGTGAGAGCACAAAAATGAGATACTGTAACCAAGCAGGAAGAAGAACTGGTCCCTTGGGTAGCATTCTAGGTGATATGCCAATATTCTGCCATCGGCCATGCAATCAGACGTTTTTCGTGGTTTTTGAATTCATGAACATTTAGGATTTTTTATAAAGTATTGGTATTTATCATCATATGAGATTTCAATTAGTTTTTCAAAGTTGACATGGCCCCATCGTTAGTCTAATTTGCAATTAGAGAAAATGGAAGCATTCAGGCAACAATAAAAATAGTGATTTAGAAGCAATTTATTTGGTGCTTGTAGAAAACTGATTGAAAAATAAAGAAATATTTTTAAAAAATTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACACAGTGTCTTCCAATAAAGA</pcr_primer_p1>
		<pcr_primer_p2>GTATCTCATTTTTGTGCTCTCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACACAGTGTCTTCCAATAAAGATCAGAAAAACGAGAAAAGAAGAAAATCAATAAGAAACAAGGAACATCAAATGTGGCAGATGTTCTAGAGAGTCCTACGGGAAGGTTAATGCCTAGACTAGTCATCCCACTGTCCTACTAATGAGGATAGCCGCTGCTGGCCCTGGCCGGGACCAAGTCCTAATTAAAGGTGGATTAGATGAATAGGGATGTCTTCTTGACCCAGGTGAGAGCACAAAAATGAGATAC</canonical_amplicon>
		<polymorphic_amplicon>AACACAGTGTCTTCCAATAAAGATCAGAAAAACGAGAAAAGAAGAAAATCAATAAGAAACAAGGAACATCAAAWGTGGCAGATGTTCTAGAGAGTCCTACGGGAAGGTTAATGCCTAGACTAGTCATCCCACTGTCCTACTAATGAGGATAGCCGCTGCTGGCCCTGGCCGGGACCAAGTCCTAATTAAAGGTGGATTAGATGAATAGGGATGTCTTCTTGACCCAGGTGAGAGCACAAAAATGAGATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35574</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>741975</contig_pos>
        <strand></strand>
        <context>GCAGGAAGAA[G/A]AACTGGTCCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGACCCAGGTGAGAGCACAAAAATGAGATACTGTAACCAAGCAGGAAGAA</left_flank>
        <right_flank>AACTGGTCCCTTGGGTAGCATTCTAGGTGATATGCCAATATTCTGCCATC</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGAATCTTGCGATTTGATACGATTTGATGAGTTTCTTCATATTTTTAGAGATAAAGGACATCATAAATATTTCAGAATAGTTCATACTGTGGAGTATCTCAATAAGAACCAAATGTGGATATTTGAATATTTTCATTTTTTTTAGTAGTTCTGAAAATAGTGAAGCTTGTAAGAATCGACGTGCATTTGAATACGGTAGTAAAAAAGTTCGGGGAAAATAAGGAAAAAACACAGTGTCTTCCAATAAAGATCAGAAAAACGAGAAAAGAAGAAAATCAATAAGAAACAAGGAACATCAAATGTGGCAGATGTTCTAGAGAGTCCTACGGGAAGGTTAATGCCTAGACTAGTCATCCCACTGTCCTACTAATGAGGATAGCCGCTGCTGGCCCTGGCCGGGACCAAGTCCTAATTAAAGGTGGATTAGATGAATAGGGATGTCTTCTTGACCCAGGTGAGAGCACAAAAATGAGATACTGTAACCAAGCAGGAAGAAGAACTGGTCCCTTGGGTAGCATTCTAGGTGATATGCCAATATTCTGCCATCGGCCATGCAATCAGACGTTTTTCGTGGTTTTTGAATTCATGAACATTTAGGATTTTTTATAAAGTATTGGTATTTATCATCATATGAGATTTCAATTAGTTTTTCAAAGTTGACATGGCCCCATCGTTAGTCTAATTTGCAATTAGAGAAAATGGAAGCATTCAGGCAACAATAAAAATAGTGATTTAGAAGCAATTTATTTGGTGCTTGTAGAAAACTGATTGAAAAATAAAGAAATATTTTTAAAAAATTGGAACAAGATTTAAACAAAAAAGAGGAATTTTTCAGGAAACTTTCATATTCGGACTATTCCATCATCCTTAAAAACTCCTCCTCTGTTTGATACCATACTCCAAAATGCACCAATCTCGCAAAAATCCTAATCGATGCCACACGATTATCTGAATCCCTCACGACATATGTGTGGCTTGTGAACGAATACGTACTTGG</canonical>
            <polymorphic>TTTCGAATCTTGCGATTTGATACGATTTGATGAGTTTCTTCATATTTTTAGAGATAAAGGACATCATAAATATTTCAGAATAGTTCATACTGTGGAGTATCTCAATAAGAACCAAATGTGGATATTTGAATATTTTCATTTTTTTTAGTAGTTCTGAAAATAGTGAAGCTTGTAAGAATCGACGTGCATTTGAATACGGTAGTAAAAAAGTTCGGGGAAAATAAGGAAAAAACACAGTGTCTTCCAATAAAGATCAGAAAAACGAGAAAAGAAGAAAATCAATAAGAAACAAGGAACATCAAATGTGGCAGATGTTCTAGAGAGTCCTACGGGAAGGTTAATGCCTAGACTAGTCATCCCACTGTCCTACTAATGAGGATAGCCGCTGCTGGCCCTGGCCGGGACCAAGTCCTAATTAAAGGTGGATTAGATGAATAGGGATGTCTTCTTGACCCAGGTGAGAGCACAAAAATGAGATACTGTAACCAAGCAGGAAGAARAACTGGTCCCTTGGGTAGCATTCTAGGTGATATGCCAATATTCTGCCATCGGCCATGCAATCAGACGTTTTTCGTGGTTTTTGAATTCATGAACATTTAGGATTTTTTATAAAGTATTGGTATTTATCATCATATGAGATTTCAATTAGTTTTTCAAAGTTGACATGGCCCCATCGTTAGTCTAATTTGCAATTAGAGAAAATGGAAGCATTCAGGCAACAATAAAAATAGTGATTTAGAAGCAATTTATTTGGTGCTTGTAGAAAACTGATTGAAAAATAAAGAAATATTTTTAAAAAATTGGAACAAGATTTAAACAAAAAAGAGGAATTTTTCAGGAAACTTTCATATTCGGACTATTCCATCATCCTTAAAAACTCCTCCTCTGTTTGATACCATACTCCAAAATGCACCAATCTCGCAAAAATCCTAATCGATGCCACACGATTATCTGAATCCCTCACGACATATGTGTGGCTTGTGAACGAATACGTACTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTAGATGAATAGGGATGTCT</pcr_primer_p1>
		<pcr_primer_p2>CCATGTCAACTTTGAAAAACTAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GGATTAGATGAATAGGGATGTCTTCTTGACCCAGGTGAGAGCACAAAAATGAGATACTGTAACCAAGCAGGAAGAAGAACTGGTCCCTTGGGTAGCATTCTAGGTGATATGCCAATATTCTGCCATCGGCCATGCAATCAGACGTTTTTCGTGGTTTTTGAATTCATGAACATTTAGGATTTTTTATAAAGTATTGGTATTTATCATCATATGAGATTTCAATTAGTTTTTCAAAGTTGACATGG</canonical_amplicon>
		<polymorphic_amplicon>GGATTAGATGAATAGGGATGTCTTCTTGACCCAGGTGAGAGCACAAAAATGAGATACTGTAACCAAGCAGGAAGAARAACTGGTCCCTTGGGTAGCATTCTAGGTGATATGCCAATATTCTGCCATCGGCCATGCAATCAGACGTTTTTCGTGGTTTTTGAATTCATGAACATTTAGGATTTTTTATAAAGTATTGGTATTTATCATCATATGAGATTTCAATTAGTTTTTCAAAGTTGACATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35575</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>793370</contig_pos>
        <strand>+</strand>
        <context>CGCGGGGATA[A/C]AAGGGGAGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCGTCTGGAACGTCGGGCAAAAGCGCAGGCACTGCGCCACGCGGGGATA</left_flank>
        <right_flank>AAGGGGAGATAGAGCGAAAGGTGTATAGGAAGGGGGAGGGTGGCGGCGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAAAAAGTGAAAGTGAGACATTTTTTGAACAAATGAAAAAAAAACAATTTTTAGCGAATTTTTTCCCATTTTGTTCTGTTTTTGATTGCATATCAAATTTAAATGGAAACTGCCATAAGTCTTTTTCAAAACCAAAACATTGAGTTTCGAAAAATCAGTAATATGTCGTTCAAAATATAAAAGAATATGGAATAATAAAGGAAAAGTACGAAATCGAAAGACCTGAACAAAATCACATCACAATAGAACTTAACTGATACTTCTAGGAACCCCCAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGCCGTCCTTTCCCTGTACCCTATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGCGTCTGGAACGTCGGGCAAAAGCGCAGGCACTGCGCCACGCGGGGATACAAGGGGAGATAGAGCGAAAGGTGTATAGGAAGGGGGAGGGTGGCGGCGCTGCCCGAGGCTTACCGTCGTCGTCGAACTCGGCTTTTTGAATGAGAATTTTGGCGACAGCTTTTGTATAATTCTTGACAACCCCTTTTTCGCTGGCTCTGGTGTCGCCTCTTTTTGTGGTTTTGCCACTCCAGCCGCCGTTGCCATCTTCGCCATCAACCCAGTCTTCACCGGAGCAGCCGCCTTCGGCTTCTTCTTTTTGATCGCCGGTTTTCCGGGCCACGTGGCGAATCTCGCATCCGGACGAAGTGTCAAGTACTTGTGCATCTCTTCGCCAAACTTCATATCAATCTTGTCCTTTTTCTTCGGCTTTGGAAACTCGTCGTCGAACTTTTTCAGGTTAAACGCTTTGGTTTTCGGCTTGATGAGGTGAAGAATTTCTTGTTTACGATAGTCCACATAGTTACGGTCTTGCTCTTTGGCGAGGCGTCTGAAAATTTTTGAATTTTGGG</canonical>
            <polymorphic>TCAAAAAAAGTGAAAGTGAGACATTTTTTGAACAAATGAAAAAAAAACAATTTTTAGCGAATTTTTTCCCATTTTGTTCTGTTTTTGATTGCATATCAAATTTAAATGGAAACTGCCATAAGTCTTTTTCAAAACCAAAACATTGAGTTTCGAAAAATCAGTAATATGTCGTTCAAAATATAAAAGAATATGGAATAATAAAGGAAAAGTACGAAATCGAAAGACCTGAACAAAATCACATCACAATAGAACTTAACTGATACTTCTAGGAACCCCCAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGCCGTCCTTTCCCTGTACCCTATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGCGTCTGGAACGTCGGGCAAAAGCGCAGGCACTGCGCCACGCGGGGATAMAAGGGGAGATAGAGCGAAAGGTGTATAGGAAGGGGGAGGGTGGCGGCGCTGCCCGAGGCTTACCGTCGTCGTCGAACTCGGCTTTTTGAATGAGAATTTTGGCGACAGCTTTTGTATAATTCTTGACAACCCCTTTTTCGCTGGCTCTGGTGTCGCCTCTTTTTGTGGTTTTGCCACTCCAGCCGCCGTTGCCATCTTCGCCATCAACCCAGTCTTCACCGGAGCAGCCGCCTTCGGCTTCTTCTTTTTGATCGCCGGTTTTCCGGGCCACGTGGCGAATCTCGCATCCGGACGAAGTGTCAAGTACTTGTGCATCTCTTCGCCAAACTTCATATCAATCTTGTCCTTTTTCTTCGGCTTTGGAAACTCGTCGTCGAACTTTTTCAGGTTAAACGCTTTGGTTTTCGGCTTGATGAGGTGAAGAATTTCTTGTTTACGATAGTCCACATAGTTACGGTCTTGCTCTTTGGCGAGGCGTCTGAAAATTTTTGAATTTTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTTTCCCTGTACCCTATC</pcr_primer_p1>
		<pcr_primer_p2>GGGTTGTCAAGAATTATACAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCCTTTCCCTGTACCCTATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGCGTCTGGAACGTCGGGCAAAAGCGCAGGCACTGCGCCACGCGGGGATACAAGGGGAGATAGAGCGAAAGGTGTATAGGAAGGGGGAGGGTGGCGGCGCTGCCCGAGGCTTACCGTCGTCGTCGAACTCGGCTTTTTGAATGAGAATTTTGGCGACAGCTTTTGTATAATTCTTGACAACCC</canonical_amplicon>
		<polymorphic_amplicon>TCCTTTCCCTGTACCCTATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGCGTCTGGAACGTCGGGCAAAAGCGCAGGCACTGCGCCACGCGGGGATAMAAGGGGAGATAGAGCGAAAGGTGTATAGGAAGGGGGAGGGTGGCGGCGCTGCCCGAGGCTTACCGTCGTCGTCGAACTCGGCTTTTTGAATGAGAATTTTGGCGACAGCTTTTGTATAATTCTTGACAACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35576</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>793417</contig_pos>
        <strand>+</strand>
        <context>AGGGTGGCGG[C/G]GCYGCCCGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATACAAGGGGAGATAGAGCGAAAGGTGTATAGGAAGGGGGAGGGTGGCGG</left_flank>
        <right_flank>GCTGCCCGAGGCTTACCGTCGTCGTCGAACTCGGCTTTTTGAATGAGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATTTTTAGCGAATTTTTTCCCATTTTGTTCTGTTTTTGATTGCATATCAAATTTAAATGGAAACTGCCATAAGTCTTTTTCAAAACCAAAACATTGAGTTTCGAAAAATCAGTAATATGTCGTTCAAAATATAAAAGAATATGGAATAATAAAGGAAAAGTACGAAATCGAAAGACCTGAACAAAATCACATCACAATAGAACTTAACTGATACTTCTAGGAACCCCCAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGCCGTCCTTTCCCTGTACCCTATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGCGTCTGGAACGTCGGGCAAAAGCGCAGGCACTGCGCCACGCGGGGATACAAGGGGAGATAGAGCGAAAGGTGTATAGGAAGGGGGAGGGTGGCGGCGCTGCCCGAGGCTTACCGTCGTCGTCGAACTCGGCTTTTTGAATGAGAATTTTGGCGACAGCTTTTGTATAATTCTTGACAACCCCTTTTTCGCTGGCTCTGGTGTCGCCTCTTTTTGTGGTTTTGCCACTCCAGCCGCCGTTGCCATCTTCGCCATCAACCCAGTCTTCACCGGAGCAGCCGCCTTCGGCTTCTTCTTTTTGATCGCCGGTTTTCCGGGCCACGTGGCGAATCTCGCATCCGGACGAAGTGTCAAGTACTTGTGCATCTCTTCGCCAAACTTCATATCAATCTTGTCCTTTTTCTTCGGCTTTGGAAACTCGTCGTCGAACTTTTTCAGGTTAAACGCTTTGGTTTTCGGCTTGATGAGGTGAAGAATTTCTTGTTTACGATAGTCCACATAGTTACGGTCTTGCTCTTTGGCGAGGCGTCTGAAAATTTTTGAATTTTGGGGATTACTGTAGTCATCGGAAAAATTCTGAAACCCAGCATAGCTTGCC</canonical>
            <polymorphic>CAATTTTTAGCGAATTTTTTCCCATTTTGTTCTGTTTTTGATTGCATATCAAATTTAAATGGAAACTGCCATAAGTCTTTTTCAAAACCAAAACATTGAGTTTCGAAAAATCAGTAATATGTCGTTCAAAATATAAAAGAATATGGAATAATAAAGGAAAAGTACGAAATCGAAAGACCTGAACAAAATCACATCACAATAGAACTTAACTGATACTTCTAGGAACCCCCAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGCCGTCCTTTCCCTGTACCCTATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGCGTCTGGAACGTCGGGCAAAAGCGCAGGCACTGCGCCACGCGGGGATACAAGGGGAGATAGAGCGAAAGGTGTATAGGAAGGGGGAGGGTGGCGGSGCTGCCCGAGGCTTACCGTCGTCGTCGAACTCGGCTTTTTGAATGAGAATTTTGGCGACAGCTTTTGTATAATTCTTGACAACCCCTTTTTCGCTGGCTCTGGTGTCGCCTCTTTTTGTGGTTTTGCCACTCCAGCCGCCGTTGCCATCTTCGCCATCAACCCAGTCTTCACCGGAGCAGCCGCCTTCGGCTTCTTCTTTTTGATCGCCGGTTTTCCGGGCCACGTGGCGAATCTCGCATCCGGACGAAGTGTCAAGTACTTGTGCATCTCTTCGCCAAACTTCATATCAATCTTGTCCTTTTTCTTCGGCTTTGGAAACTCGTCGTCGAACTTTTTCAGGTTAAACGCTTTGGTTTTCGGCTTGATGAGGTGAAGAATTTCTTGTTTACGATAGTCCACATAGTTACGGTCTTGCTCTTTGGCGAGGCGTCTGAAAATTTTTGAATTTTGGGGATTACTGTAGTCATCGGAAAAATTCTGAAACCCAGCATAGCTTGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>499 358 62 35 33 11 2</canonical_bands>
                <polymorphic_bands>561 358 35 33 11 2</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>320 291 208 134 42 5</canonical_bands>
                <polymorphic_bands>320 291 213 134 42</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>317 291 208 139 45</canonical_bands>
                <polymorphic_bands>347 317 291 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTTTCCCTGTACCCTATC</pcr_primer_p1>
		<pcr_primer_p2>GGGTTGTCAAGAATTATACAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCCTTTCCCTGTACCCTATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGCGTCTGGAACGTCGGGCAAAAGCGCAGGCACTGCGCCACGCGGGGATACAAGGGGAGATAGAGCGAAAGGTGTATAGGAAGGGGGAGGGTGGCGGCGCTGCCCGAGGCTTACCGTCGTCGTCGAACTCGGCTTTTTGAATGAGAATTTTGGCGACAGCTTTTGTATAATTCTTGACAACCC</canonical_amplicon>
		<polymorphic_amplicon>TCCTTTCCCTGTACCCTATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGCGTCTGGAACGTCGGGCAAAAGCGCAGGCACTGCGCCACGCGGGGATACAAGGGGAGATAGAGCGAAAGGTGTATAGGAAGGGGGAGGGTGGCGGSGCTGCCCGAGGCTTACCGTCGTCGTCGAACTCGGCTTTTTGAATGAGAATTTTGGCGACAGCTTTTGTATAATTCTTGACAACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35577</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>793420</contig_pos>
        <strand>+</strand>
        <context>GTGGCGGSGC[C/T]GCCCGAGGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAGGGGAGATAGAGCGAAAGGTGTATAGGAAGGGGGAGGGTGGCGGCGC</left_flank>
        <right_flank>GCCCGAGGCTTACCGTCGTCGTCGAACTCGGCTTTTTGAATGAGAATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTAGCGAATTTTTTCCCATTTTGTTCTGTTTTTGATTGCATATCAAATTTAAATGGAAACTGCCATAAGTCTTTTTCAAAACCAAAACATTGAGTTTCGAAAAATCAGTAATATGTCGTTCAAAATATAAAAGAATATGGAATAATAAAGGAAAAGTACGAAATCGAAAGACCTGAACAAAATCACATCACAATAGAACTTAACTGATACTTCTAGGAACCCCCAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGCCGTCCTTTCCCTGTACCCTATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGCGTCTGGAACGTCGGGCAAAAGCGCAGGCACTGCGCCACGCGGGGATACAAGGGGAGATAGAGCGAAAGGTGTATAGGAAGGGGGAGGGTGGCGGCGCTGCCCGAGGCTTACCGTCGTCGTCGAACTCGGCTTTTTGAATGAGAATTTTGGCGACAGCTTTTGTATAATTCTTGACAACCCCTTTTTCGCTGGCTCTGGTGTCGCCTCTTTTTGTGGTTTTGCCACTCCAGCCGCCGTTGCCATCTTCGCCATCAACCCAGTCTTCACCGGAGCAGCCGCCTTCGGCTTCTTCTTTTTGATCGCCGGTTTTCCGGGCCACGTGGCGAATCTCGCATCCGGACGAAGTGTCAAGTACTTGTGCATCTCTTCGCCAAACTTCATATCAATCTTGTCCTTTTTCTTCGGCTTTGGAAACTCGTCGTCGAACTTTTTCAGGTTAAACGCTTTGGTTTTCGGCTTGATGAGGTGAAGAATTTCTTGTTTACGATAGTCCACATAGTTACGGTCTTGCTCTTTGGCGAGGCGTCTGAAAATTTTTGAATTTTGGGGATTACTGTAGTCATCGGAAAAATTCTGAAACCCAGCATAGCTTGCCGCT</canonical>
            <polymorphic>TTTTTAGCGAATTTTTTCCCATTTTGTTCTGTTTTTGATTGCATATCAAATTTAAATGGAAACTGCCATAAGTCTTTTTCAAAACCAAAACATTGAGTTTCGAAAAATCAGTAATATGTCGTTCAAAATATAAAAGAATATGGAATAATAAAGGAAAAGTACGAAATCGAAAGACCTGAACAAAATCACATCACAATAGAACTTAACTGATACTTCTAGGAACCCCCAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGCCGTCCTTTCCCTGTACCCTATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGCGTCTGGAACGTCGGGCAAAAGCGCAGGCACTGCGCCACGCGGGGATACAAGGGGAGATAGAGCGAAAGGTGTATAGGAAGGGGGAGGGTGGCGGCGCYGCCCGAGGCTTACCGTCGTCGTCGAACTCGGCTTTTTGAATGAGAATTTTGGCGACAGCTTTTGTATAATTCTTGACAACCCCTTTTTCGCTGGCTCTGGTGTCGCCTCTTTTTGTGGTTTTGCCACTCCAGCCGCCGTTGCCATCTTCGCCATCAACCCAGTCTTCACCGGAGCAGCCGCCTTCGGCTTCTTCTTTTTGATCGCCGGTTTTCCGGGCCACGTGGCGAATCTCGCATCCGGACGAAGTGTCAAGTACTTGTGCATCTCTTCGCCAAACTTCATATCAATCTTGTCCTTTTTCTTCGGCTTTGGAAACTCGTCGTCGAACTTTTTCAGGTTAAACGCTTTGGTTTTCGGCTTGATGAGGTGAAGAATTTCTTGTTTACGATAGTCCACATAGTTACGGTCTTGCTCTTTGGCGAGGCGTCTGAAAATTTTTGAATTTTGGGGATTACTGTAGTCATCGGAAAAATTCTGAAACCCAGCATAGCTTGCCGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>498 326 176</canonical_bands>
                <polymorphic_bands>674 326</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTTTCCCTGTACCCTATC</pcr_primer_p1>
		<pcr_primer_p2>GGGTTGTCAAGAATTATACAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCCTTTCCCTGTACCCTATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGCGTCTGGAACGTCGGGCAAAAGCGCAGGCACTGCGCCACGCGGGGATACAAGGGGAGATAGAGCGAAAGGTGTATAGGAAGGGGGAGGGTGGCGGCGCTGCCCGAGGCTTACCGTCGTCGTCGAACTCGGCTTTTTGAATGAGAATTTTGGCGACAGCTTTTGTATAATTCTTGACAACCC</canonical_amplicon>
		<polymorphic_amplicon>TCCTTTCCCTGTACCCTATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGCGTCTGGAACGTCGGGCAAAAGCGCAGGCACTGCGCCACGCGGGGATACAAGGGGAGATAGAGCGAAAGGTGTATAGGAAGGGGGAGGGTGGCGGCGCYGCCCGAGGCTTACCGTCGTCGTCGAACTCGGCTTTTTGAATGAGAATTTTGGCGACAGCTTTTGTATAATTCTTGACAACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35578</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>795027</contig_pos>
        <strand>+</strand>
        <context>AGGTCCTGGG[C/T]GCGCATACGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGAACCGGGGACCTCTCGATCTGCAGTCGAATGCTCCACAGGTCCTGGG</left_flank>
        <right_flank>GCGCATACGCATAATGGATGGGCGACGGAGGACGCGCCGATAGGGTACAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTGTTCAGGTCTTTNGATTTGGTACTTTTCCTTTATTATTCCATATTGTGGGGGGGGGTTTACAGTCCATGAAAACTCACTTTTCTTCTTTTACAGTCAATTCTCTCTCCTGTGTTGCGGCCATTTTCGAGGAGGCGAGACTTTAGAAATATTCTGATGCTCAGCAGCCACGTGATGCCAGGAACCAGGTGATTCAGATGACTGGAAGAAGCGGGTGAAACACGGGAGAAGTTCACGCGCGGAAATTCAAAAATTCAGATAGGCTCATACGGTATCCACACCCAAAACTTTGGATTCACTAATAAAGTGTACAGAATAAACTATTTTAATAATTGAATCTTTTTTGTGTTTCCACATATAAACAGCTGTAAAAACAGAAACAAATCCCTATATAGTATTCCATGTGTTCTTTAAAAAAAGAAAAAAGAACTAGGGGTCACCCGGAGTTGAACCGGGGACCTCTCGATCTGCAGTCGAATGCTCCACAGGTCCTGGGCGCGCATACGCATAATGGATGGGCGACGGAGGACGCGCCGATAGGGTACAGGGAAAGGACGGCGGTATGGGGCATATACGGGGCATATGGGGTACACCGCCGCCGCAAAGCATCTCCTCGCCTGGCTTGCTGGCACTCGATGAAATGAACTAAAACGTTGGTTGGGGGTTCCTAGAAGTATCAGTTAAGTTCTATTGTGATGTGATTTTGTTCAGGTCTTTCGATTTCGTACTTTTCCTTTATTATTCCATATTCTTTTATATTTTGAACGACACATTACTGATTTTTCGAAACTCAATGTTTTGGTTTTGAAAAAGACTTATGGCAGTTTCCATTTAAATTTGATATGAAATCAAAAACAGAAGAAAATGGGAAAAAATTCGCTAAAAATTGTTTTTTTTTCATTTGTTCAAAAAATGTCTCACTTTCACTTTTTTGAAATTACATGAAAAATTGAAAATTTTTATAATTTAAACTTTGTAATTATTGTATACTTACCAA</canonical>
            <polymorphic>ATTTTGTTCAGGTCTTTNGATTTGGTACTTTTCCTTTATTATTCCATATTGTGGGGGGGGGTTTACAGTCCATGAAAACTCACTTTTCTTCTTTTACAGTCAATTCTCTCTCCTGTGTTGCGGCCATTTTCGAGGAGGCGAGACTTTAGAAATATTCTGATGCTCAGCAGCCACGTGATGCCAGGAACCAGGTGATTCAGATGACTGGAAGAAGCGGGTGAAACACGGGAGAAGTTCACGCGCGGAAATTCAAAAATTCAGATAGGCTCATACGGTATCCACACCCAAAACTTTGGATTCACTAATAAAGTGTACAGAATAAACTATTTTAATAATTGAATCTTTTTTGTGTTTCCACATATAAACAGCTGTAAAAACAGAAACAAATCCCTATATAGTATTCCATGTGTTCTTTAAAAAAAGAAAAAAGAACTAGGGGTCACCCGGAGTTGAACCGGGGACCTCTCGATCTGCAGTCGAATGCTCCACAGGTCCTGGGYGCGCATACGCATAATGGATGGGCGACGGAGGACGCGCCGATAGGGTACAGGGAAAGGACGGCGGTATGGGGCATATACGGGGCATATGGGGTACACCGCCGCCGCAAAGCATCTCCTCGCCTGGCTTGCTGGCACTCGATGAAATGAACTAAAACGTTGGTTGGGGGTTCCTAGAAGTATCAGTTAAGTTCTATTGTGATGTGATTTTGTTCAGGTCTTTCGATTTCGTACTTTTCCTTTATTATTCCATATTCTTTTATATTTTGAACGACACATTACTGATTTTTCGAAACTCAATGTTTTGGTTTTGAAAAAGACTTATGGCAGTTTCCATTTAAATTTGATATGAAATCAAAAACAGAAGAAAATGGGAAAAAATTCGCTAAAAATTGTTTTTTTTTCATTTGTTCAAAAAATGTCTCACTTTCACTTTTTTGAAATTACATGAAAAATTGAAAATTTTTATAATTTAAACTTTGTAATTATTGTATACTTACCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>466 259 240 33 2</canonical_bands>
                <polymorphic_bands>466 292 240 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>464 259 242 33 2</canonical_bands>
                <polymorphic_bands>464 261 242 33</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGCGC</site>
                <isoschizomers>
                    <enzyme>BsePI</enzyme>
                    <enzyme>BssHII</enzyme>
                    <enzyme>PauI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 374 125</canonical_bands>
                <polymorphic_bands>626 374</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCTATATAGTATTCCATGTGTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTAGTTCATTTCATCGAGTGC</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>CCCTATATAGTATTCCATGTGTTCTTTAAAAAAAGAAAAAAGAACTAGGGGTCACCCGGAGTTGAACCGGGGACCTCTCGATCTGCAGTCGAATGCTCCACAGGTCCTGGGCGCGCATACGCATAATGGATGGGCGACGGAGGACGCGCCGATAGGGTACAGGGAAAGGACGGCGGTATGGGGCATATACGGGGCATATGGGGTACACCGCCGCCGCAAAGCATCTCCTCGCCTGGCTTGCTGGCACTCGATGAAATGAACTAA</canonical_amplicon>
		<polymorphic_amplicon>CCCTATATAGTATTCCATGTGTTCTTTAAAAAAAGAAAAAAGAACTAGGGGTCACCCGGAGTTGAACCGGGGACCTCTCGATCTGCAGTCGAATGCTCCACAGGTCCTGGGYGCGCATACGCATAATGGATGGGCGACGGAGGACGCGCCGATAGGGTACAGGGAAAGGACGGCGGTATGGGGCATATACGGGGCATATGGGGTACACCGCCGCCGCAAAGCATCTCCTCGCCTGGCTTGCTGGCACTCGATGAAATGAACTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35579</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>825979</contig_pos>
        <strand></strand>
        <context>TGCTGGAAGG[T/C]TCTGGGTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CATACAACAGGGAGGAGTACTGAGAACGAGGTGAACTTGTTGCTGGAAGG</left_flank>
        <right_flank>TCTGGGTTTAAGCTATGTTGATCTTTAGTGTCAAAGTTCAGGTTTTAGAC</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGACTTTGACCTTATTTATCTCGGCTACCGTAGGAGATACCATAAATATGTCAACTAATAAAATTTTTGTGATATTATGAAAAAAAGTTTATTAGTTGACAACTTTTTTATACGTTTGACAGGAACCGAGATAAATTGGCTCAAAAGTTAGGAATGACCGTCTATTACATGTTTTGCGGTAAGCTTTAACGATAACAATCCAGCTAACGTATACTTGAAGCTAACCTAAGAAAATCTATCTTGCCCTAAAACCAACTACGATTCCCCTTTGTCACGATTCACGACCAAACCATAGTCTTGCAGGCCGCACAAGTTCGAATCGTCCTCCTGAAAATTTCACAAGGTTTGCATATTATACCTCTCTCGCACCCCACTCGCTGAGGTATTATCAGTGTTTTATCACATAGTTTGACAACGGTTTGATAATGTCACAAAATGATCAAACCAGCATACAACAGGGAGGAGTACTGAGAACGAGGTGAACTTGTTGCTGGAAGGTTCTGGGTTTAAGCTATGTTGATCTTTAGTGTCAAAGTTCAGGTTTTAGACATATAGGGACCACAGAGATTTTGATTTTGGCGGTAAATGTTTTGACTTCCAGTTAGCTTTGTGAAGCTTAAGCTTGAAAAAAGCTTAGTTTTGCACCCCCGAAGTGTGAGTTTTGTACCCCTAAATCACTTTGTACCCCGTTATACCCCCGAATCGTTGTACCCTCCGAATTTTGTGCCCAACAATCAAGGTTCTAGTTCAACATTTGTACTCTTAGCTCAACAGAAATCTCAGATCTACAGTACCTTCTCCAGATGCTCTAGAACTTTCTAGACCCCACTTGTCGTTGAAATTAGCACTCAGAATTGGCACAATTCCTCAATTTATAACTTTCGAGACAACATTTCCAACAGGTGACTCTAAAACTCTATTACGATACTTGCCCCCAGCGAAGCTATCCGTTTAAGTGTGAACTTGTTCCTGGGGAAAATTCCTCAACTCGAAGTTACT</canonical>
            <polymorphic>TCGACTTTGACCTTATTTATCTCGGCTACCGTAGGAGATACCATAAATATGTCAACTAATAAAATTTTTGTGATATTATGAAAAAAAGTTTATTAGTTGACAACTTTTTTATACGTTTGACAGGAACCGAGATAAATTGGCTCAAAAGTTAGGAATGACCGTCTATTACATGTTTTGCGGTAAGCTTTAACGATAACAATCCAGCTAACGTATACTTGAAGCTAACCTAAGAAAATCTATCTTGCCCTAAAACCAACTACGATTCCCCTTTGTCACGATTCACGACCAAACCATAGTCTTGCAGGCCGCACAAGTTCGAATCGTCCTCCTGAAAATTTCACAAGGTTTGCATATTATACCTCTCTCGCACCCCACTCGCTGAGGTATTATCAGTGTTTTATCACATAGTTTGACAACGGTTTGATAATGTCACAAAATGATCAAACCAGCATACAACAGGGAGGAGTACTGAGAACGAGGTGAACTTGTTGCTGGAAGGYTCTGGGTTTAAGCTATGTTGATCTTTAGTGTCAAAGTTCAGGTTTTAGACATATAGGGACCACAGAGATTTTGATTTTGGCGGTAAATGTTTTGACTTCCAGTTAGCTTTGTGAAGCTTAAGCTTGAAAAAAGCTTAGTTTTGCACCCCCGAAGTGTGAGTTTTGTACCCCTAAATCACTTTGTACCCCGTTATACCCCCGAATCGTTGTACCCTCCGAATTTTGTGCCCAACAATCAAGGTTCTAGTTCAACATTTGTACTCTTAGCTCAACAGAAATCTCAGATCTACAGTACCTTCTCCAGATGCTCTAGAACTTTCTAGACCCCACTTGTCGTTGAAATTAGCACTCAGAATTGGCACAATTCCTCAATTTATAACTTTCGAGACAACATTTCCAACAGGTGACTCTAAAACTCTATTACGATACTTGCCCCCAGCGAAGCTATCCGTTTAAGTGTGAACTTGTTCCTGGGGAAAATTCCTCAACTCGAAGTTACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCGCTGAGGTATTATCAGTG</pcr_primer_p1>
		<pcr_primer_p2>CTTAAGCTTCACAAAGCTAACTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTCGCTGAGGTATTATCAGTGTTTTATCACATAGTTTGACAACGGTTTGATAATGTCACAAAATGATCAAACCAGCATACAACAGGGAGGAGTACTGAGAACGAGGTGAACTTGTTGCTGGAAGGTTCTGGGTTTAAGCTATGTTGATCTTTAGTGTCAAAGTTCAGGTTTTAGACATATAGGGACCACAGAGATTTTGATTTTGGCGGTAAATGTTTTGACTTCCAGTTAGCTTTGTGAAGCTTAAG</canonical_amplicon>
		<polymorphic_amplicon>ACTCGCTGAGGTATTATCAGTGTTTTATCACATAGTTTGACAACGGTTTGATAATGTCACAAAATGATCAAACCAGCATACAACAGGGAGGAGTACTGAGAACGAGGTGAACTTGTTGCTGGAAGGYTCTGGGTTTAAGCTATGTTGATCTTTAGTGTCAAAGTTCAGGTTTTAGACATATAGGGACCACAGAGATTTTGATTTTGGCGGTAAATGTTTTGACTTCCAGTTAGCTTTGTGAAGCTTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35580</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>826048</contig_pos>
        <strand></strand>
        <context>ACCACAGAGA[T/C]TTTGATTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGATCTTTAGTGTCAAAGTTCAGGTTTTAGACATATAGGGACCACAGAGA</left_flank>
        <right_flank>TTTGATTTTGGCGGTAAATGTTTTGACTTCCAGTTAGCTTTGTGAAGCTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGATATTATGAAAAAAAGTTTATTAGTTGACAACTTTTTTATACGTTTGACAGGAACCGAGATAAATTGGCTCAAAAGTTAGGAATGACCGTCTATTACATGTTTTGCGGTAAGCTTTAACGATAACAATCCAGCTAACGTATACTTGAAGCTAACCTAAGAAAATCTATCTTGCCCTAAAACCAACTACGATTCCCCTTTGTCACGATTCACGACCAAACCATAGTCTTGCAGGCCGCACAAGTTCGAATCGTCCTCCTGAAAATTTCACAAGGTTTGCATATTATACCTCTCTCGCACCCCACTCGCTGAGGTATTATCAGTGTTTTATCACATAGTTTGACAACGGTTTGATAATGTCACAAAATGATCAAACCAGCATACAACAGGGAGGAGTACTGAGAACGAGGTGAACTTGTTGCTGGAAGGTTCTGGGTTTAAGCTATGTTGATCTTTAGTGTCAAAGTTCAGGTTTTAGACATATAGGGACCACAGAGATTTTGATTTTGGCGGTAAATGTTTTGACTTCCAGTTAGCTTTGTGAAGCTTAAGCTTGAAAAAAGCTTAGTTTTGCACCCCCGAAGTGTGAGTTTTGTACCCCTAAATCACTTTGTACCCCGTTATACCCCCGAATCGTTGTACCCTCCGAATTTTGTGCCCAACAATCAAGGTTCTAGTTCAACATTTGTACTCTTAGCTCAACAGAAATCTCAGATCTACAGTACCTTCTCCAGATGCTCTAGAACTTTCTAGACCCCACTTGTCGTTGAAATTAGCACTCAGAATTGGCACAATTCCTCAATTTATAACTTTCGAGACAACATTTCCAACAGGTGACTCTAAAACTCTATTACGATACTTGCCCCCAGCGAAGCTATCCGTTTAAGTGTGAACTTGTTCCTGGGGAAAATTCCTCAACTCGAAGTTACTAATTGCTCGGTCAAGTGTCATATTTGTTATTTTGCTCCCAGGAAAAAGGCACTGATCCATGATTTGCAC</canonical>
            <polymorphic>GTGATATTATGAAAAAAAGTTTATTAGTTGACAACTTTTTTATACGTTTGACAGGAACCGAGATAAATTGGCTCAAAAGTTAGGAATGACCGTCTATTACATGTTTTGCGGTAAGCTTTAACGATAACAATCCAGCTAACGTATACTTGAAGCTAACCTAAGAAAATCTATCTTGCCCTAAAACCAACTACGATTCCCCTTTGTCACGATTCACGACCAAACCATAGTCTTGCAGGCCGCACAAGTTCGAATCGTCCTCCTGAAAATTTCACAAGGTTTGCATATTATACCTCTCTCGCACCCCACTCGCTGAGGTATTATCAGTGTTTTATCACATAGTTTGACAACGGTTTGATAATGTCACAAAATGATCAAACCAGCATACAACAGGGAGGAGTACTGAGAACGAGGTGAACTTGTTGCTGGAAGGTTCTGGGTTTAAGCTATGTTGATCTTTAGTGTCAAAGTTCAGGTTTTAGACATATAGGGACCACAGAGAYTTTGATTTTGGCGGTAAATGTTTTGACTTCCAGTTAGCTTTGTGAAGCTTAAGCTTGAAAAAAGCTTAGTTTTGCACCCCCGAAGTGTGAGTTTTGTACCCCTAAATCACTTTGTACCCCGTTATACCCCCGAATCGTTGTACCCTCCGAATTTTGTGCCCAACAATCAAGGTTCTAGTTCAACATTTGTACTCTTAGCTCAACAGAAATCTCAGATCTACAGTACCTTCTCCAGATGCTCTAGAACTTTCTAGACCCCACTTGTCGTTGAAATTAGCACTCAGAATTGGCACAATTCCTCAATTTATAACTTTCGAGACAACATTTCCAACAGGTGACTCTAAAACTCTATTACGATACTTGCCCCCAGCGAAGCTATCCGTTTAAGTGTGAACTTGTTCCTGGGGAAAATTCCTCAACTCGAAGTTACTAATTGCTCGGTCAAGTGTCATATTTGTTATTTTGCTCCCAGGAAAAAGGCACTGATCCATGATTTGCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGTTTAAGCTATGTTGATCTTT</pcr_primer_p1>
		<pcr_primer_p2>TGTTGAACTAGAACCTTGATTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGGTTTAAGCTATGTTGATCTTTAGTGTCAAAGTTCAGGTTTTAGACATATAGGGACCACAGAGATTTTGATTTTGGCGGTAAATGTTTTGACTTCCAGTTAGCTTTGTGAAGCTTAAGCTTGAAAAAAGCTTAGTTTTGCACCCCCGAAGTGTGAGTTTTGTACCCCTAAATCACTTTGTACCCCGTTATACCCCCGAATCGTTGTACCCTCCGAATTTTGTGCCCAACAATCAAGGTTCTAGTTCAACA</canonical_amplicon>
		<polymorphic_amplicon>GGGTTTAAGCTATGTTGATCTTTAGTGTCAAAGTTCAGGTTTTAGACATATAGGGACCACAGAGAYTTTGATTTTGGCGGTAAATGTTTTGACTTCCAGTTAGCTTTGTGAAGCTTAAGCTTGAAAAAAGCTTAGTTTTGCACCCCCGAAGTGTGAGTTTTGTACCCCTAAATCACTTTGTACCCCGTTATACCCCCGAATCGTTGTACCCTCCGAATTTTGTGCCCAACAATCAAGGTTCTAGTTCAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35581</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>826068</contig_pos>
        <strand></strand>
        <context>GGCGGTAAAT[G/T]TTTTGACTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAGGTTTTAGACATATAGGGACCACAGAGATTTTGATTTTGGCGGTAAAT</left_flank>
        <right_flank>TTTTGACTTCCAGTTAGCTTTGTGAAGCTTAAGCTTGAAAAAAGCTTAGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATTAGTTGACAACTTTTTTATACGTTTGACAGGAACCGAGATAAATTGGCTCAAAAGTTAGGAATGACCGTCTATTACATGTTTTGCGGTAAGCTTTAACGATAACAATCCAGCTAACGTATACTTGAAGCTAACCTAAGAAAATCTATCTTGCCCTAAAACCAACTACGATTCCCCTTTGTCACGATTCACGACCAAACCATAGTCTTGCAGGCCGCACAAGTTCGAATCGTCCTCCTGAAAATTTCACAAGGTTTGCATATTATACCTCTCTCGCACCCCACTCGCTGAGGTATTATCAGTGTTTTATCACATAGTTTGACAACGGTTTGATAATGTCACAAAATGATCAAACCAGCATACAACAGGGAGGAGTACTGAGAACGAGGTGAACTTGTTGCTGGAAGGTTCTGGGTTTAAGCTATGTTGATCTTTAGTGTCAAAGTTCAGGTTTTAGACATATAGGGACCACAGAGATTTTGATTTTGGCGGTAAATGTTTTGACTTCCAGTTAGCTTTGTGAAGCTTAAGCTTGAAAAAAGCTTAGTTTTGCACCCCCGAAGTGTGAGTTTTGTACCCCTAAATCACTTTGTACCCCGTTATACCCCCGAATCGTTGTACCCTCCGAATTTTGTGCCCAACAATCAAGGTTCTAGTTCAACATTTGTACTCTTAGCTCAACAGAAATCTCAGATCTACAGTACCTTCTCCAGATGCTCTAGAACTTTCTAGACCCCACTTGTCGTTGAAATTAGCACTCAGAATTGGCACAATTCCTCAATTTATAACTTTCGAGACAACATTTCCAACAGGTGACTCTAAAACTCTATTACGATACTTGCCCCCAGCGAAGCTATCCGTTTAAGTGTGAACTTGTTCCTGGGGAAAATTCCTCAACTCGAAGTTACTAATTGCTCGGTCAAGTGTCATATTTGTTATTTTGCTCCCAGGAAAAAGGCACTGATCCATGATTTGCACTATAAACAGTGACAATAGAA</canonical>
            <polymorphic>TTATTAGTTGACAACTTTTTTATACGTTTGACAGGAACCGAGATAAATTGGCTCAAAAGTTAGGAATGACCGTCTATTACATGTTTTGCGGTAAGCTTTAACGATAACAATCCAGCTAACGTATACTTGAAGCTAACCTAAGAAAATCTATCTTGCCCTAAAACCAACTACGATTCCCCTTTGTCACGATTCACGACCAAACCATAGTCTTGCAGGCCGCACAAGTTCGAATCGTCCTCCTGAAAATTTCACAAGGTTTGCATATTATACCTCTCTCGCACCCCACTCGCTGAGGTATTATCAGTGTTTTATCACATAGTTTGACAACGGTTTGATAATGTCACAAAATGATCAAACCAGCATACAACAGGGAGGAGTACTGAGAACGAGGTGAACTTGTTGCTGGAAGGTTCTGGGTTTAAGCTATGTTGATCTTTAGTGTCAAAGTTCAGGTTTTAGACATATAGGGACCACAGAGATTTTGATTTTGGCGGTAAATKTTTTGACTTCCAGTTAGCTTTGTGAAGCTTAAGCTTGAAAAAAGCTTAGTTTTGCACCCCCGAAGTGTGAGTTTTGTACCCCTAAATCACTTTGTACCCCGTTATACCCCCGAATCGTTGTACCCTCCGAATTTTGTGCCCAACAATCAAGGTTCTAGTTCAACATTTGTACTCTTAGCTCAACAGAAATCTCAGATCTACAGTACCTTCTCCAGATGCTCTAGAACTTTCTAGACCCCACTTGTCGTTGAAATTAGCACTCAGAATTGGCACAATTCCTCAATTTATAACTTTCGAGACAACATTTCCAACAGGTGACTCTAAAACTCTATTACGATACTTGCCCCCAGCGAAGCTATCCGTTTAAGTGTGAACTTGTTCCTGGGGAAAATTCCTCAACTCGAAGTTACTAATTGCTCGGTCAAGTGTCATATTTGTTATTTTGCTCCCAGGAAAAAGGCACTGATCCATGATTTGCACTATAAACAGTGACAATAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTAGTGTCAAAGTTCAGGTT</pcr_primer_p1>
		<pcr_primer_p2>TGAGCTAAGAGTACAAATGTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTTAGTGTCAAAGTTCAGGTTTTAGACATATAGGGACCACAGAGATTTTGATTTTGGCGGTAAATGTTTTGACTTCCAGTTAGCTTTGTGAAGCTTAAGCTTGAAAAAAGCTTAGTTTTGCACCCCCGAAGTGTGAGTTTTGTACCCCTAAATCACTTTGTACCCCGTTATACCCCCGAATCGTTGTACCCTCCGAATTTTGTGCCCAACAATCAAGGTTCTAGTTCAACATTTGTACTCTTAGCTCA</canonical_amplicon>
		<polymorphic_amplicon>TCTTTAGTGTCAAAGTTCAGGTTTTAGACATATAGGGACCACAGAGATTTTGATTTTGGCGGTAAATKTTTTGACTTCCAGTTAGCTTTGTGAAGCTTAAGCTTGAAAAAAGCTTAGTTTTGCACCCCCGAAGTGTGAGTTTTGTACCCCTAAATCACTTTGTACCCCGTTATACCCCCGAATCGTTGTACCCTCCGAATTTTGTGCCCAACAATCAAGGTTCTAGTTCAACATTTGTACTCTTAGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35582</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>888220</contig_pos>
        <strand></strand>
        <context>ctagttgcct[T/A]acttttgcaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CTTGAAAAAGTTAGGTCATCATCTTTTGCTAGTGAGTTTTCTAGTTGCCT</left_flank>
        <right_flank>ACTTTTGCAAGTTGAATTTTTTAGACCACCAACTTTTATGGCTTATAAAT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATACAGGTTTTACGGTGATTTCGAAATTTTCGTGAAGTTAGAAATTTTGGAAATCTGAAAGTTCAGATTCCGAATTTTAGGAACTTTTTTTAAAATTTTCGAAATTTCCCCAACTTTGATTTTTCTGAAATTTCTTTTTTTTTCGAATATTCGATTTTTCTCTGGAATTTCTGAATTTTTCGAAAATTTCGGGTTTTCCGGAATTTGTCAGTTTTTGAAGAAAATTGCATTTTCCAAGCAACGACTCACTTTTAGATCTTTTCTTGACATTGCGCTCAATCGGGATACATAGTTGGCGAGCACTGGGAACTTCCTGAAAAGTCATCGTAGCGGTCCCTGGTGGCCTAACTTTTGCAAGTTGAGTTTTCTAGGCCAACGAATTTTATGACCTAGAAATGACCTGATGGGTTTTCTAGGCCATTTTAACATGCTGACCTAGAAAATTCAACTTGAAAAAGTTAGGTCATCATCTTTTGCTAGTGAGTTTTCTAGTTGCCTTACTTTTGCAAGTTGAATTTTTTAGACCACCAACTTTTATGGCTTATAAATTACCTGATATACCTAGTGGGGTTTCTAGGCCATTTCAACATGGTGGCCTAGAAAATTCAACTTGCAAAAGCTAGGTCGTCATGGTAAAATGGCCTCATACTACCCTGGTATGTTTTCTAGGCCATTCTAACATGGTGGCTCTAAAACCCAACTGGCGAAAGTTATGCCACCATGTGACAATAGCCTATAAAACCAACCAGGCGAATATCAAACCATTTCTAGGTCCTTTTAACATGATAGTCTAGAAAACTTTACCTGAAAAAGTTAGGCCAGCAGGTTGAAATGTCCTAGAAAACACTAAGAAATACCGGTCCCGAAAAGCCGAGACCCTGTTTCCTGGCTCAAAGTTGGCGGCTATAAATTTTACGAAAAAAAATGCTGGCCTAGAATCCCTCAAAATTCCTAAATTTTTAGGCCACCGACACGGATGACTACGACACGCAAATCGTC</canonical>
            <polymorphic>AATACAGGTTTTACGGTGATTTCGAAATTTTCGTGAAGTTAGAAATTTTGGAAATCTGAAAGTTCAGATTCCGAATTTTAGGAACTTTTTTTAAAATTTTCGAAATTTCCCCAACTTTGATTTTTCTGAAATTTCTTTTTTTTTCGAATATTCGATTTTTCTCTGGAATTTCTGAATTTTTCGAAAATTTCGGGTTTTCCGGAATTTGTCAGTTTTTGAAGAAAATTGCATTTTCCAAGCAACGACTCACTTTTAGATCTTTTCTTGACATTGCGCTCAATCGGGATACATAGTTGGCGAGCACTGGGAACTTCCTGAAAAGTCATCGTAGCGGTCCCTGGTGGCCTAACTTTTGCAAGTTGAGTTTTCTAGGCCAACGAATTTTATGACCTAGAAATGACCTGATGGGTTTTCTAGGCCATTTTAACATGCTGACCTAGAAAATTCAACTTGAAAAAGTTAGGTCATCATCTTTTGCTAGTGAGTTTTCTAGTTGCCTWACTTTTGCAAGTTGAATTTTTTAGACCACCAACTTTTATGGCTTATAAATTACCTGATATACCTAGTGGGGTTTCTAGGCCATTTCAACATGGTGGCCTAGAAAATTCAACTTGCAAAAGCTAGGTCGTCATGGTAAAATGGCCTCATACTACCCTGGTATGTTTTCTAGGCCATTCTAACATGGTGGCTCTAAAACCCAACTGGCGAAAGTTATGCCACCATGTGACAATAGCCTATAAAACCAACCAGGCGAATATCAAACCATTTCTAGGTCCTTTTAACATGATAGTCTAGAAAACTTTACCTGAAAAAGTTAGGCCAGCAGGTTGAAATGTCCTAGAAAACACTAAGAAATACCGGTCCCGAAAAGCCGAGACCCTGTTTCCTGGCTCAAAGTTGGCGGCTATAAATTTTACGAAAAAAAATGCTGGCCTAGAATCCCTCAAAATTCCTAAATTTTTAGGCCACCGACACGGATGACTACGACACGCAAATCGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTCCTGAAAAGTCATCGTAG</pcr_primer_p1>
		<pcr_primer_p2>AATTTATAGCCGCCAACTTT</pcr_primer_p2>
		<pcr_amplicon_size>604</pcr_amplicon_size>
		<canonical_amplicon>ACTTCCTGAAAAGTCATCGTAGCGGTCCCTGGTGGCCTAACTTTTGCAAGTTGAGTTTTCTAGGCCAACGAATTTTATGACCTAGAAATGACCTGATGGGTTTTCTAGGCCATTTTAACATGCTGACCTAGAAAATTCAACTTGAAAAAGTTAGGTCATCATCTTTTGCTAGTGAGTTTTCTAGTTGCCTTACTTTTGCAAGTTGAATTTTTTAGACCACCAACTTTTATGGCTTATAAATTACCTGATATACCTAGTGGGGTTTCTAGGCCATTTCAACATGGTGGCCTAGAAAATTCAACTTGCAAAAGCTAGGTCGTCATGGTAAAATGGCCTCATACTACCCTGGTATGTTTTCTAGGCCATTCTAACATGGTGGCTCTAAAACCCAACTGGCGAAAGTTATGCCACCATGTGACAATAGCCTATAAAACCAACCAGGCGAATATCAAACCATTTCTAGGTCCTTTTAACATGATAGTCTAGAAAACTTTACCTGAAAAAGTTAGGCCAGCAGGTTGAAATGTCCTAGAAAACACTAAGAAATACCGGTCCCGAAAAGCCGAGACCCTGTTTCCTGGCTCAAAGTTGGCGGCTATAAATT</canonical_amplicon>
		<polymorphic_amplicon>ACTTCCTGAAAAGTCATCGTAGCGGTCCCTGGTGGCCTAACTTTTGCAAGTTGAGTTTTCTAGGCCAACGAATTTTATGACCTAGAAATGACCTGATGGGTTTTCTAGGCCATTTTAACATGCTGACCTAGAAAATTCAACTTGAAAAAGTTAGGTCATCATCTTTTGCTAGTGAGTTTTCTAGTTGCCTWACTTTTGCAAGTTGAATTTTTTAGACCACCAACTTTTATGGCTTATAAATTACCTGATATACCTAGTGGGGTTTCTAGGCCATTTCAACATGGTGGCCTAGAAAATTCAACTTGCAAAAGCTAGGTCGTCATGGTAAAATGGCCTCATACTACCCTGGTATGTTTTCTAGGCCATTCTAACATGGTGGCTCTAAAACCCAACTGGCGAAAGTTATGCCACCATGTGACAATAGCCTATAAAACCAACCAGGCGAATATCAAACCATTTCTAGGTCCTTTTAACATGATAGTCTAGAAAACTTTACCTGAAAAAGTTAGGCCAGCAGGTTGAAATGTCCTAGAAAACACTAAGAAATACCGGTCCCGAAAAGCCGAGACCCTGTTTCCTGGCTCAAAGTTGGCGGCTATAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35583</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>918507</contig_pos>
        <strand>+</strand>
        <context>CGAGAAAATT[G/T]AACTAGGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCCCTGTTTTTACAATATTGAAGATTCGAGCCTTAAATCGAGAAAATT</left_flank>
        <right_flank>AACTAGGATTACGATAGAAACATGGGTTAGGAGCTAAAAATTGACAAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTGTTTATATTTTTCTGAAAATTCCAGATAAGTTTTGGCTCATTTTTTAAATTTCCAGCTGATCTTTCAGACATTTCCCCCCCCCCCCCTCAAAAACTCTAAAAAACTCTCACCCGTTCATTCTTCCCAACCGAATTGTCGATCCACGCGAACGCAATCGGCTTCTGAAGGCGGACATTGTAGGCTCCGGACGTGATTTGTCCGACTCTCGCTTCTTGTCCATCGATGCGGATCACTTCGTTTCCGGATGGAACGTATTTGTCATCCAAAACGATTCCCTCTTCGGTGTCGAATGTGATCAGGGCAAGGCGGCGGCTGGAAGCACTCAAAGGGGTTACAGATCGGGCGATTTTAGGGATTCGAAGATTTTTTGGGATCTGATTGAATTCTTTTGAAAAGGATTTCTAGCGGAACAGTCTTTCTACAGTATCAACAAAAAATTTATCATTTCCCTGTTTTTACAATATTGAAGATTCGAGCCTTAAATCGAGAAAATTGAACTAGGATTACGATAGAAACATGGGTTAGGAGCTAAAAATTGACAAGTTTGCATCAGGATTACTGTAGAAAGGTGTTTAAGCCAAACAAAACTGCTTTTTTTTGCCGATTTTCAGAGCCTAAAATTTTAAGAAACTTACTCAAACTCCTTCTTGCTAAACTCCAGCGCGGATTCTCTTCCAATGAATTCCTTCTTGTTGAAATCCACCAAACTTCCAATTCCACACTCGAACGGATTCGTATCCAGGGTCAGTTCTTTTCCCCAAATCTTGTATCCATGCTCCAAACGCATCATATTCAACGCCGCCTGTCCGAAGTTCACAATTCCATGATCGCGTCCGGCGCCCATCACTGCGTGGTAGAGTTTCGCAGTTTCCGCACGATTATGGAACAATTCGAAGGAGAGTTGTCCGGTGGAAGTCGAAGAACGGGCACAGACGACACCGACTGGTCCCAGGCGGATCATTCGAGTCGATTTCTGAGGGAATCCTTCGTCGGAG</canonical>
            <polymorphic>GTCTGTTTATATTTTTCTGAAAATTCCAGATAAGTTTTGGCTCATTTTTTAAATTTCCAGCTGATCTTTCAGACATTTCCCCCCCCCCCCCTCAAAAACTCTAAAAAACTCTCACCCGTTCATTCTTCCCAACCGAATTGTCGATCCACGCGAACGCAATCGGCTTCTGAAGGCGGACATTGTAGGCTCCGGACGTGATTTGTCCGACTCTCGCTTCTTGTCCATCGATGCGGATCACTTCGTTTCCGGATGGAACGTATTTGTCATCCAAAACGATTCCCTCTTCGGTGTCGAATGTGATCAGGGCAAGGCGGCGGCTGGAAGCACTCAAAGGGGTTACAGATCGGGCGATTTTAGGGATTCGAAGATTTTTTGGGATCTGATTGAATTCTTTTGAAAAGGATTTCTAGCGGAACAGTCTTTCTACAGTATCAACAAAAAATTTATCATTTCCCTGTTTTTACAATATTGAAGATTCGAGCCTTAAATCGAGAAAATTKAACTAGGATTACGATAGAAACATGGGTTAGGAGCTAAAAATTGACAAGTTTGCATCAGGATTACTGTAGAAAGGTGTTTAAGCCAAACAAAACTGCTTTTTTTTGCCGATTTTCAGAGCCTAAAATTTTAAGAAACTTACTCAAACTCCTTCTTGCTAAACTCCAGCGCGGATTCTCTTCCAATGAATTCCTTCTTGTTGAAATCCACCAAACTTCCAATTCCACACTCGAACGGATTCGTATCCAGGGTCAGTTCTTTTCCCCAAATCTTGTATCCATGCTCCAAACGCATCATATTCAACGCCGCCTGTCCGAAGTTCACAATTCCATGATCGCGTCCGGCGCCCATCACTGCGTGGTAGAGTTTCGCAGTTTCCGCACGATTATGGAACAATTCGAAGGAGAGTTGTCCGGTGGAAGTCGAAGAACGGGCACAGACGACACCGACTGGTCCCAGGCGGATCATTCGAGTCGATTTCTGAGGGAATCCTTCGTCGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGAACAGTCTTTCTACAGTATC</pcr_primer_p1>
		<pcr_primer_p2>TTTAGCAAGAAGGAGTTTGAGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGGAACAGTCTTTCTACAGTATCAACAAAAAATTTATCATTTCCCTGTTTTTACAATATTGAAGATTCGAGCCTTAAATCGAGAAAATTGAACTAGGATTACGATAGAAACATGGGTTAGGAGCTAAAAATTGACAAGTTTGCATCAGGATTACTGTAGAAAGGTGTTTAAGCCAAACAAAACTGCTTTTTTTTGCCGATTTTCAGAGCCTAAAATTTTAAGAAACTTACTCAAACTCCTTCTTGCTAAA</canonical_amplicon>
		<polymorphic_amplicon>CGGAACAGTCTTTCTACAGTATCAACAAAAAATTTATCATTTCCCTGTTTTTACAATATTGAAGATTCGAGCCTTAAATCGAGAAAATTKAACTAGGATTACGATAGAAACATGGGTTAGGAGCTAAAAATTGACAAGTTTGCATCAGGATTACTGTAGAAAGGTGTTTAAGCCAAACAAAACTGCTTTTTTTTGCCGATTTTCAGAGCCTAAAATTTTAAGAAACTTACTCAAACTCCTTCTTGCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35584</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>965554</contig_pos>
        <strand>+</strand>
        <context>TGTTTGTCTC[A/G]ATTTTTGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTATGTTGATTTTCGAAAACTGATTAAATTCTTCGAAAATGTTTGTCTC</left_flank>
        <right_flank>ATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGAC</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTTTTAGGTTTTTTGTCCCTTTGCATCGTAAAATAAGCTAAATTGTCCCATTTTTCTGTTTTTTTCATAAAATTCTCATTAGAGCGGATTTGCTCTTTTTTAAAATCTTGAATTTTTACAGCTTCCAGGTATCTTTGCGGTTCGAAGTTTTCTTTTTTTTAGTAAACTTTTTTTTGAAAAATCTGAAAATCAAGTATCGCACTTTGCGATTTCCGAGAAATTCCAAGAATCCTACATTTTGATATTTTGTTCAAAAACCTAAACTTGTAAAGCTTTTAAGATATCACACATTTCTATTCAAAGTTTAGGAGGTGAGAGACGCAGACAACGAGACACTCTAACCGTCTGCGTCTCTCCCCTCAAAACTTCAAATGTCCATATCTCGGCTTCTAGTGGTCGTAGAGAACTGATTTTTGAATAGAAGTATTTGGATAGAAGTATTCAGTTTATGTTGATTTTCGAAAACTGATTAAATTCTTCGAAAATGTTTGTCTCGATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGACTCTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTAGGAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACGAGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATATCTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTCAAAGAACCTGCTTTTCTGATTATTGTTTAGATCTGCGATTTTTGAAATTTTCAAAAACCCCAAATTTTTGCTATTTTGTTTCTAAAACATAAAGCTCTAAAAATCTTTCACATTTCTAGCCAAAAATCACGTTTATAGGACCACTAGGAACCGAAATATATTGTCTATTCAAAATAATCGCGCGGGTGAACGAGTAAAAAACCCTGCGTCTCTACAGCGCCTTTACAGGTT</canonical>
            <polymorphic>TTTTTTTTTAGGTTTTTTGTCCCTTTGCATCGTAAAATAAGCTAAATTGTCCCATTTTTCTGTTTTTTTCATAAAATTCTCATTAGAGCGGATTTGCTCTTTTTTAAAATCTTGAATTTTTACAGCTTCCAGGTATCTTTGCGGTTCGAAGTTTTCTTTTTTTTAGTAAACTTTTTTTTGAAAAATCTGAAAATCAAGTATCGCACTTTGCGATTTCCGAGAAATTCCAAGAATCCTACATTTTGATATTTTGTTCAAAAACCTAAACTTGTAAAGCTTTTAAGATATCACACATTTCTATTCAAAGTTTAGGAGGTGAGAGACGCAGACAACGAGACACTCTAACCGTCTGCGTCTCTCCCCTCAAAACTTCAAATGTCCATATCTCGGCTTCTAGTGGTCGTAGAGAACTGATTTTTGAATAGAAGTATTTGGATAGAAGTATTCAGTTTATGTTGATTTTCGAAAACTGATTAAATTCTTCGAAAATGTTTGTCTCRATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGACTCTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTAGGAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACGAGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATATCTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTCAAAGAACCTGCTTTTCTGATTATTGTTTAGATCTGCGATTTTTGAAATTTTCAAAAACCCCAAATTTTTGCTATTTTGTTTCTAAAACATAAAGCTCTAAAAATCTTTCACATTTCTAGCCAAAAATCACGTTTATAGGACCACTAGGAACCGAAATATATTGTCTATTCAAAATAATCGCGCGGGTGAACGAGTAAAAAACCCTGCGTCTCTACAGCGCCTTTACAGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 317 147 20 15</canonical_bands>
                <polymorphic_bands>516 317 147 20</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>503 386 111</canonical_bands>
                <polymorphic_bands>889 111</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCAAGAATCCTACATTTTGATA</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAAAATCGCAGATCTAA</pcr_primer_p2>
		<pcr_amplicon_size>591</pcr_amplicon_size>
		<canonical_amplicon>TCCAAGAATCCTACATTTTGATATTTTGTTCAAAAACCTAAACTTGTAAAGCTTTTAAGATATCACACATTTCTATTCAAAGTTTAGGAGGTGAGAGACGCAGACAACGAGACACTCTAACCGTCTGCGTCTCTCCCCTCAAAACTTCAAATGTCCATATCTCGGCTTCTAGTGGTCGTAGAGAACTGATTTTTGAATAGAAGTATTTGGATAGAAGTATTCAGTTTATGTTGATTTTCGAAAACTGATTAAATTCTTCGAAAATGTTTGTCTCGATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGACTCTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTAGGAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACGAGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATATCTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTCAAAGAACCTGCTTTTCTGATTATTGTTTAGATCTGCGATTTTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>TCCAAGAATCCTACATTTTGATATTTTGTTCAAAAACCTAAACTTGTAAAGCTTTTAAGATATCACACATTTCTATTCAAAGTTTAGGAGGTGAGAGACGCAGACAACGAGACACTCTAACCGTCTGCGTCTCTCCCCTCAAAACTTCAAATGTCCATATCTCGGCTTCTAGTGGTCGTAGAGAACTGATTTTTGAATAGAAGTATTTGGATAGAAGTATTCAGTTTATGTTGATTTTCGAAAACTGATTAAATTCTTCGAAAATGTTTGTCTCRATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGACTCTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTAGGAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACGAGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATATCTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTCAAAGAACCTGCTTTTCTGATTATTGTTTAGATCTGCGATTTTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35585</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>965656</contig_pos>
        <strand></strand>
        <context>aggactacta[G/A]gaaccgagat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTA</left_flank>
        <right_flank>GAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAAAATCTTGAATTTTTACAGCTTCCAGGTATCTTTGCGGTTCGAAGTTTTCTTTTTTTTAGTAAACTTTTTTTTGAAAAATCTGAAAATCAAGTATCGCACTTTGCGATTTCCGAGAAATTCCAAGAATCCTACATTTTGATATTTTGTTCAAAAACCTAAACTTGTAAAGCTTTTAAGATATCACACATTTCTATTCAAAGTTTAGGAGGTGAGAGACGCAGACAACGAGACACTCTAACCGTCTGCGTCTCTCCCCTCAAAACTTCAAATGTCCATATCTCGGCTTCTAGTGGTCGTAGAGAACTGATTTTTGAATAGAAGTATTTGGATAGAAGTATTCAGTTTATGTTGATTTTCGAAAACTGATTAAATTCTTCGAAAATGTTTGTCTCGATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGACTCTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTAGGAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACGAGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATATCTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTCAAAGAACCTGCTTTTCTGATTATTGTTTAGATCTGCGATTTTTGAAATTTTCAAAAACCCCAAATTTTTGCTATTTTGTTTCTAAAACATAAAGCTCTAAAAATCTTTCACATTTCTAGCCAAAAATCACGTTTATAGGACCACTAGGAACCGAAATATATTGTCTATTCAAAATAATCGCGCGGGTGAACGAGTAAAAAACCCTGCGTCTCTACAGCGCCTTTACAGGTTTGGACACTCTCTACACGTTTTTTAGTCATTCACCCGCGCGATTATTTTGAATAGACAGTAACCTTTTTTTTACATTTTTCTCGAATAATGAAAATTGGTGAT</canonical>
            <polymorphic>TTTAAAATCTTGAATTTTTACAGCTTCCAGGTATCTTTGCGGTTCGAAGTTTTCTTTTTTTTAGTAAACTTTTTTTTGAAAAATCTGAAAATCAAGTATCGCACTTTGCGATTTCCGAGAAATTCCAAGAATCCTACATTTTGATATTTTGTTCAAAAACCTAAACTTGTAAAGCTTTTAAGATATCACACATTTCTATTCAAAGTTTAGGAGGTGAGAGACGCAGACAACGAGACACTCTAACCGTCTGCGTCTCTCCCCTCAAAACTTCAAATGTCCATATCTCGGCTTCTAGTGGTCGTAGAGAACTGATTTTTGAATAGAAGTATTTGGATAGAAGTATTCAGTTTATGTTGATTTTCGAAAACTGATTAAATTCTTCGAAAATGTTTGTCTCGATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGACTCTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTARGAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACGAGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATATCTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTCAAAGAACCTGCTTTTCTGATTATTGTTTAGATCTGCGATTTTTGAAATTTTCAAAAACCCCAAATTTTTGCTATTTTGTTTCTAAAACATAAAGCTCTAAAAATCTTTCACATTTCTAGCCAAAAATCACGTTTATAGGACCACTAGGAACCGAAATATATTGTCTATTCAAAATAATCGCGCGGGTGAACGAGTAAAAAACCCTGCGTCTCTACAGCGCCTTTACAGGTTTGGACACTCTCTACACGTTTTTTAGTCATTCACCCGCGCGATTATTTTGAATAGACAGTAACCTTTTTTTTACATTTTTCTCGAATAATGAAAATTGGTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>292 196 189 164 122 28 9</canonical_bands>
                <polymorphic_bands>292 196 189 164 131 28</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 314 184</canonical_bands>
                <polymorphic_bands>816 184</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTCGAAAATGTTTGTCTC</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAAAATCGCAGATCTAA</pcr_primer_p2>
		<pcr_amplicon_size>339</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTCGAAAATGTTTGTCTCGATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGACTCTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTAGGAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACGAGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATATCTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTCAAAGAACCTGCTTTTCTGATTATTGTTTAGATCTGCGATTTTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTCGAAAATGTTTGTCTCGATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGACTCTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTARGAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACGAGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATATCTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTCAAAGAACCTGCTTTTCTGATTATTGTTTAGATCTGCGATTTTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35586</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>965757</contig_pos>
        <strand></strand>
        <context>aatgtccata[T/A]ytcggctcat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATA</left_flank>
        <right_flank>CTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTTTGCGATTTCCGAGAAATTCCAAGAATCCTACATTTTGATATTTTGTTCAAAAACCTAAACTTGTAAAGCTTTTAAGATATCACACATTTCTATTCAAAGTTTAGGAGGTGAGAGACGCAGACAACGAGACACTCTAACCGTCTGCGTCTCTCCCCTCAAAACTTCAAATGTCCATATCTCGGCTTCTAGTGGTCGTAGAGAACTGATTTTTGAATAGAAGTATTTGGATAGAAGTATTCAGTTTATGTTGATTTTCGAAAACTGATTAAATTCTTCGAAAATGTTTGTCTCGATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGACTCTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTAGGAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACGAGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATATCTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTCAAAGAACCTGCTTTTCTGATTATTGTTTAGATCTGCGATTTTTGAAATTTTCAAAAACCCCAAATTTTTGCTATTTTGTTTCTAAAACATAAAGCTCTAAAAATCTTTCACATTTCTAGCCAAAAATCACGTTTATAGGACCACTAGGAACCGAAATATATTGTCTATTCAAAATAATCGCGCGGGTGAACGAGTAAAAAACCCTGCGTCTCTACAGCGCCTTTACAGGTTTGGACACTCTCTACACGTTTTTTAGTCATTCACCCGCGCGATTATTTTGAATAGACAGTAACCTTTTTTTTACATTTTTCTCGAATAATGAAAATTGGTGATTTCCTAATAATTTCCCACCCCGCTAATCACTGTTCTAGCTCATCTCATCTAGAAGCCGAGATATAGGCGTTTTCAGACTAGTCTTTTTTGGGATTTTTAAA</canonical>
            <polymorphic>CACTTTGCGATTTCCGAGAAATTCCAAGAATCCTACATTTTGATATTTTGTTCAAAAACCTAAACTTGTAAAGCTTTTAAGATATCACACATTTCTATTCAAAGTTTAGGAGGTGAGAGACGCAGACAACGAGACACTCTAACCGTCTGCGTCTCTCCCCTCAAAACTTCAAATGTCCATATCTCGGCTTCTAGTGGTCGTAGAGAACTGATTTTTGAATAGAAGTATTTGGATAGAAGTATTCAGTTTATGTTGATTTTCGAAAACTGATTAAATTCTTCGAAAATGTTTGTCTCGATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGACTCTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTAGGAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACGAGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATAWCTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTCAAAGAACCTGCTTTTCTGATTATTGTTTAGATCTGCGATTTTTGAAATTTTCAAAAACCCCAAATTTTTGCTATTTTGTTTCTAAAACATAAAGCTCTAAAAATCTTTCACATTTCTAGCCAAAAATCACGTTTATAGGACCACTAGGAACCGAAATATATTGTCTATTCAAAATAATCGCGCGGGTGAACGAGTAAAAAACCCTGCGTCTCTACAGCGCCTTTACAGGTTTGGACACTCTCTACACGTTTTTTAGTCATTCACCCGCGCGATTATTTTGAATAGACAGTAACCTTTTTTTTACATTTTTCTCGAATAATGAAAATTGGTGATTTCCTAATAATTTCCCACCCCGCTAATCACTGTTCTAGCTCATCTCATCTAGAAGCCGAGATATAGGCGTTTTCAGACTAGTCTTTTTTGGGATTTTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTCGAAAATGTTTGTCTC</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAAAATCGCAGATCTAA</pcr_primer_p2>
		<pcr_amplicon_size>339</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTCGAAAATGTTTGTCTCGATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGACTCTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTAGGAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACGAGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATATCTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTCAAAGAACCTGCTTTTCTGATTATTGTTTAGATCTGCGATTTTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTCGAAAATGTTTGTCTCGATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGACTCTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTAGGAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACGAGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATAWCTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTCAAAGAACCTGCTTTTCTGATTATTGTTTAGATCTGCGATTTTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35587</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>965758</contig_pos>
        <strand></strand>
        <context>atgtccataw[C/T]tcggctcata</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATAT</left_flank>
        <right_flank>TCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTGCGATTTCCGAGAAATTCCAAGAATCCTACATTTTGATATTTTGTTCAAAAACCTAAACTTGTAAAGCTTTTAAGATATCACACATTTCTATTCAAAGTTTAGGAGGTGAGAGACGCAGACAACGAGACACTCTAACCGTCTGCGTCTCTCCCCTCAAAACTTCAAATGTCCATATCTCGGCTTCTAGTGGTCGTAGAGAACTGATTTTTGAATAGAAGTATTTGGATAGAAGTATTCAGTTTATGTTGATTTTCGAAAACTGATTAAATTCTTCGAAAATGTTTGTCTCGATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGACTCTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTAGGAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACGAGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATATCTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTCAAAGAACCTGCTTTTCTGATTATTGTTTAGATCTGCGATTTTTGAAATTTTCAAAAACCCCAAATTTTTGCTATTTTGTTTCTAAAACATAAAGCTCTAAAAATCTTTCACATTTCTAGCCAAAAATCACGTTTATAGGACCACTAGGAACCGAAATATATTGTCTATTCAAAATAATCGCGCGGGTGAACGAGTAAAAAACCCTGCGTCTCTACAGCGCCTTTACAGGTTTGGACACTCTCTACACGTTTTTTAGTCATTCACCCGCGCGATTATTTTGAATAGACAGTAACCTTTTTTTTACATTTTTCTCGAATAATGAAAATTGGTGATTTCCTAATAATTTCCCACCCCGCTAATCACTGTTCTAGCTCATCTCATCTAGAAGCCGAGATATAGGCGTTTTCAGACTAGTCTTTTTTGGGATTTTTAAAA</canonical>
            <polymorphic>ACTTTGCGATTTCCGAGAAATTCCAAGAATCCTACATTTTGATATTTTGTTCAAAAACCTAAACTTGTAAAGCTTTTAAGATATCACACATTTCTATTCAAAGTTTAGGAGGTGAGAGACGCAGACAACGAGACACTCTAACCGTCTGCGTCTCTCCCCTCAAAACTTCAAATGTCCATATCTCGGCTTCTAGTGGTCGTAGAGAACTGATTTTTGAATAGAAGTATTTGGATAGAAGTATTCAGTTTATGTTGATTTTCGAAAACTGATTAAATTCTTCGAAAATGTTTGTCTCGATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGACTCTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTAGGAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACGAGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATATYTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTCAAAGAACCTGCTTTTCTGATTATTGTTTAGATCTGCGATTTTTGAAATTTTCAAAAACCCCAAATTTTTGCTATTTTGTTTCTAAAACATAAAGCTCTAAAAATCTTTCACATTTCTAGCCAAAAATCACGTTTATAGGACCACTAGGAACCGAAATATATTGTCTATTCAAAATAATCGCGCGGGTGAACGAGTAAAAAACCCTGCGTCTCTACAGCGCCTTTACAGGTTTGGACACTCTCTACACGTTTTTTAGTCATTCACCCGCGCGATTATTTTGAATAGACAGTAACCTTTTTTTTACATTTTTCTCGAATAATGAAAATTGGTGATTTCCTAATAATTTCCCACCCCGCTAATCACTGTTCTAGCTCATCTCATCTAGAAGCCGAGATATAGGCGTTTTCAGACTAGTCTTTTTTGGGATTTTTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTCGAAAATGTTTGTCTC</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAAAATCGCAGATCTAA</pcr_primer_p2>
		<pcr_amplicon_size>339</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTCGAAAATGTTTGTCTCGATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGACTCTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTAGGAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACGAGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATATCTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTCAAAGAACCTGCTTTTCTGATTATTGTTTAGATCTGCGATTTTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTCGAAAATGTTTGTCTCGATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGACTCTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTAGGAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACGAGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATATYTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTCAAAGAACCTGCTTTTCTGATTATTGTTTAGATCTGCGATTTTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35588</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>965823</contig_pos>
        <strand>+</strand>
        <context>GTTGATTTTT[C/T]AAAGAAYCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTT</left_flank>
        <right_flank>AAAGAACCTGCTTTTCTGATTATTGTTTAGATCTGCGATTTTTGAAATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTAAAGCTTTTAAGATATCACACATTTCTATTCAAAGTTTAGGAGGTGAGAGACGCAGACAACGAGACACTCTAACCGTCTGCGTCTCTCCCCTCAAAACTTCAAATGTCCATATCTCGGCTTCTAGTGGTCGTAGAGAACTGATTTTTGAATAGAAGTATTTGGATAGAAGTATTCAGTTTATGTTGATTTTCGAAAACTGATTAAATTCTTCGAAAATGTTTGTCTCGATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGACTCTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTAGGAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACGAGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATATCTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTCAAAGAACCTGCTTTTCTGATTATTGTTTAGATCTGCGATTTTTGAAATTTTCAAAAACCCCAAATTTTTGCTATTTTGTTTCTAAAACATAAAGCTCTAAAAATCTTTCACATTTCTAGCCAAAAATCACGTTTATAGGACCACTAGGAACCGAAATATATTGTCTATTCAAAATAATCGCGCGGGTGAACGAGTAAAAAACCCTGCGTCTCTACAGCGCCTTTACAGGTTTGGACACTCTCTACACGTTTTTTAGTCATTCACCCGCGCGATTATTTTGAATAGACAGTAACCTTTTTTTTACATTTTTCTCGAATAATGAAAATTGGTGATTTCCTAATAATTTCCCACCCCGCTAATCACTGTTCTAGCTCATCTCATCTAGAAGCCGAGATATAGGCGTTTTCAGACTAGTCTTTTTTGGGATTTTTAAAATTTTCGAAATTCAGAATTTTGATAAATTGTATGTTATCAGAAAGCTCTTTAAATTTCACAAATTT</canonical>
            <polymorphic>TGTAAAGCTTTTAAGATATCACACATTTCTATTCAAAGTTTAGGAGGTGAGAGACGCAGACAACGAGACACTCTAACCGTCTGCGTCTCTCCCCTCAAAACTTCAAATGTCCATATCTCGGCTTCTAGTGGTCGTAGAGAACTGATTTTTGAATAGAAGTATTTGGATAGAAGTATTCAGTTTATGTTGATTTTCGAAAACTGATTAAATTCTTCGAAAATGTTTGTCTCGATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGACTCTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTAGGAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACGAGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATATCTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTYAAAGAACCTGCTTTTCTGATTATTGTTTAGATCTGCGATTTTTGAAATTTTCAAAAACCCCAAATTTTTGCTATTTTGTTTCTAAAACATAAAGCTCTAAAAATCTTTCACATTTCTAGCCAAAAATCACGTTTATAGGACCACTAGGAACCGAAATATATTGTCTATTCAAAATAATCGCGCGGGTGAACGAGTAAAAAACCCTGCGTCTCTACAGCGCCTTTACAGGTTTGGACACTCTCTACACGTTTTTTAGTCATTCACCCGCGCGATTATTTTGAATAGACAGTAACCTTTTTTTTACATTTTTCTCGAATAATGAAAATTGGTGATTTCCTAATAATTTCCCACCCCGCTAATCACTGTTCTAGCTCATCTCATCTAGAAGCCGAGATATAGGCGTTTTCAGACTAGTCTTTTTTGGGATTTTTAAAATTTTCGAAATTCAGAATTTTGATAAATTGTATGTTATCAGAAAGCTCTTTAAATTTCACAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTCGAAAATGTTTGTCTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTTGGGGTTTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>361</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTCGAAAATGTTTGTCTCGATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGACTCTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTAGGAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACGAGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATATCTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTCAAAGAACCTGCTTTTCTGATTATTGTTTAGATCTGCGATTTTTGAAATTTTCAAAAACCCCAAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTCGAAAATGTTTGTCTCGATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGACTCTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTAGGAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACGAGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATATCTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTYAAAGAACCTGCTTTTCTGATTATTGTTTAGATCTGCGATTTTTGAAATTTTCAAAAACCCCAAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35589</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>965830</contig_pos>
        <strand>+</strand>
        <context>TTTYAAAGAA[C/T]CTGCTTTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTCAAAGAA</left_flank>
        <right_flank>CTGCTTTTCTGATTATTGTTTAGATCTGCGATTTTTGAAATTTTCAAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTAAGATATCACACATTTCTATTCAAAGTTTAGGAGGTGAGAGACGCAGACAACGAGACACTCTAACCGTCTGCGTCTCTCCCCTCAAAACTTCAAATGTCCATATCTCGGCTTCTAGTGGTCGTAGAGAACTGATTTTTGAATAGAAGTATTTGGATAGAAGTATTCAGTTTATGTTGATTTTCGAAAACTGATTAAATTCTTCGAAAATGTTTGTCTCGATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGACTCTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTAGGAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACGAGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATATCTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTCAAAGAACCTGCTTTTCTGATTATTGTTTAGATCTGCGATTTTTGAAATTTTCAAAAACCCCAAATTTTTGCTATTTTGTTTCTAAAACATAAAGCTCTAAAAATCTTTCACATTTCTAGCCAAAAATCACGTTTATAGGACCACTAGGAACCGAAATATATTGTCTATTCAAAATAATCGCGCGGGTGAACGAGTAAAAAACCCTGCGTCTCTACAGCGCCTTTACAGGTTTGGACACTCTCTACACGTTTTTTAGTCATTCACCCGCGCGATTATTTTGAATAGACAGTAACCTTTTTTTTACATTTTTCTCGAATAATGAAAATTGGTGATTTCCTAATAATTTCCCACCCCGCTAATCACTGTTCTAGCTCATCTCATCTAGAAGCCGAGATATAGGCGTTTTCAGACTAGTCTTTTTTGGGATTTTTAAAATTTTCGAAATTCAGAATTTTGATAAATTGTATGTTATCAGAAAGCTCTTTAAATTTCACAAATTTCTAAAAG</canonical>
            <polymorphic>CTTTTAAGATATCACACATTTCTATTCAAAGTTTAGGAGGTGAGAGACGCAGACAACGAGACACTCTAACCGTCTGCGTCTCTCCCCTCAAAACTTCAAATGTCCATATCTCGGCTTCTAGTGGTCGTAGAGAACTGATTTTTGAATAGAAGTATTTGGATAGAAGTATTCAGTTTATGTTGATTTTCGAAAACTGATTAAATTCTTCGAAAATGTTTGTCTCGATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGACTCTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTAGGAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACGAGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATATCTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTCAAAGAAYCTGCTTTTCTGATTATTGTTTAGATCTGCGATTTTTGAAATTTTCAAAAACCCCAAATTTTTGCTATTTTGTTTCTAAAACATAAAGCTCTAAAAATCTTTCACATTTCTAGCCAAAAATCACGTTTATAGGACCACTAGGAACCGAAATATATTGTCTATTCAAAATAATCGCGCGGGTGAACGAGTAAAAAACCCTGCGTCTCTACAGCGCCTTTACAGGTTTGGACACTCTCTACACGTTTTTTAGTCATTCACCCGCGCGATTATTTTGAATAGACAGTAACCTTTTTTTTACATTTTTCTCGAATAATGAAAATTGGTGATTTCCTAATAATTTCCCACCCCGCTAATCACTGTTCTAGCTCATCTCATCTAGAAGCCGAGATATAGGCGTTTTCAGACTAGTCTTTTTTGGGATTTTTAAAATTTTCGAAATTCAGAATTTTGATAAATTGTATGTTATCAGAAAGCTCTTTAAATTTCACAAATTTCTAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTCGAAAATGTTTGTCTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTTGGGGTTTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>361</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTCGAAAATGTTTGTCTCGATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGACTCTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTAGGAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACGAGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATATCTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTCAAAGAACCTGCTTTTCTGATTATTGTTTAGATCTGCGATTTTTGAAATTTTCAAAAACCCCAAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTCGAAAATGTTTGTCTCGATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGACTCTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTAGGAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACGAGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATATCTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTCAAAGAAYCTGCTTTTCTGATTATTGTTTAGATCTGCGATTTTTGAAATTTTCAAAAACCCCAAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35590</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>965849</contig_pos>
        <strand>+</strand>
        <context>CTGATTATTG[C/T]TTAGATCTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATATTCAGTTTATGTTGATTTTTCAAAGAACCTGCTTTTCTGATTATTG</left_flank>
        <right_flank>TTAGATCTGCGATTTTTGAAATTTTCAAAAACCCCAAATTTTTGCTATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTATTCAAAGTTTAGGAGGTGAGAGACGCAGACAACGAGACACTCTAACCGTCTGCGTCTCTCCCCTCAAAACTTCAAATGTCCATATCTCGGCTTCTAGTGGTCGTAGAGAACTGATTTTTGAATAGAAGTATTTGGATAGAAGTATTCAGTTTATGTTGATTTTCGAAAACTGATTAAATTCTTCGAAAATGTTTGTCTCGATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGACTCTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTAGGAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACGAGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATATCTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTCAAAGAACCTGCTTTTCTGATTATTGTTTAGATCTGCGATTTTTGAAATTTTCAAAAACCCCAAATTTTTGCTATTTTGTTTCTAAAACATAAAGCTCTAAAAATCTTTCACATTTCTAGCCAAAAATCACGTTTATAGGACCACTAGGAACCGAAATATATTGTCTATTCAAAATAATCGCGCGGGTGAACGAGTAAAAAACCCTGCGTCTCTACAGCGCCTTTACAGGTTTGGACACTCTCTACACGTTTTTTAGTCATTCACCCGCGCGATTATTTTGAATAGACAGTAACCTTTTTTTTACATTTTTCTCGAATAATGAAAATTGGTGATTTCCTAATAATTTCCCACCCCGCTAATCACTGTTCTAGCTCATCTCATCTAGAAGCCGAGATATAGGCGTTTTCAGACTAGTCTTTTTTGGGATTTTTAAAATTTTCGAAATTCAGAATTTTGATAAATTGTATGTTATCAGAAAGCTCTTTAAATTTCACAAATTTCTAAAAGAAAATCACTTTTCTAGACC</canonical>
            <polymorphic>TTCTATTCAAAGTTTAGGAGGTGAGAGACGCAGACAACGAGACACTCTAACCGTCTGCGTCTCTCCCCTCAAAACTTCAAATGTCCATATCTCGGCTTCTAGTGGTCGTAGAGAACTGATTTTTGAATAGAAGTATTTGGATAGAAGTATTCAGTTTATGTTGATTTTCGAAAACTGATTAAATTCTTCGAAAATGTTTGTCTCGATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGACTCTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTAGGAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACGAGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATATCTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTCAAAGAACCTGCTTTTCTGATTATTGYTTAGATCTGCGATTTTTGAAATTTTCAAAAACCCCAAATTTTTGCTATTTTGTTTCTAAAACATAAAGCTCTAAAAATCTTTCACATTTCTAGCCAAAAATCACGTTTATAGGACCACTAGGAACCGAAATATATTGTCTATTCAAAATAATCGCGCGGGTGAACGAGTAAAAAACCCTGCGTCTCTACAGCGCCTTTACAGGTTTGGACACTCTCTACACGTTTTTTAGTCATTCACCCGCGCGATTATTTTGAATAGACAGTAACCTTTTTTTTACATTTTTCTCGAATAATGAAAATTGGTGATTTCCTAATAATTTCCCACCCCGCTAATCACTGTTCTAGCTCATCTCATCTAGAAGCCGAGATATAGGCGTTTTCAGACTAGTCTTTTTTGGGATTTTTAAAATTTTCGAAATTCAGAATTTTGATAAATTGTATGTTATCAGAAAGCTCTTTAAATTTCACAAATTTCTAAAAGAAAATCACTTTTCTAGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTCGAAAATGTTTGTCTC</pcr_primer_p1>
		<pcr_primer_p2>TGTTTTAGAAACAAAATAGCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>381</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTCGAAAATGTTTGTCTCGATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGACTCTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTAGGAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACGAGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATATCTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTCAAAGAACCTGCTTTTCTGATTATTGTTTAGATCTGCGATTTTTGAAATTTTCAAAAACCCCAAATTTTTGCTATTTTGTTTCTAAAACA</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTCGAAAATGTTTGTCTCGATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGACTCTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTAGGAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACGAGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATATCTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTCAAAGAACCTGCTTTTCTGATTATTGYTTAGATCTGCGATTTTTGAAATTTTCAAAAACCCCAAATTTTTGCTATTTTGTTTCTAAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35591</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>965920</contig_pos>
        <strand>+</strand>
        <context>ACATAAAGCT[A/C]TAAAAATCYT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTTCAAAAACCCCAAATTTTTGCTATTTTGTTTCTAAAACATAAAGCT</left_flank>
        <right_flank>TAAAAATCTTTCACATTTCTAGCCAAAAATCACGTTTATAGGACCACTAG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTTCAAATGTCCATATCTCGGCTTCTAGTGGTCGTAGAGAACTGATTTTTGAATAGAAGTATTTGGATAGAAGTATTCAGTTTATGTTGATTTTCGAAAACTGATTAAATTCTTCGAAAATGTTTGTCTCGATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGACTCTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTAGGAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACGAGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATATCTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTCAAAGAACCTGCTTTTCTGATTATTGTTTAGATCTGCGATTTTTGAAATTTTCAAAAACCCCAAATTTTTGCTATTTTGTTTCTAAAACATAAAGCTCTAAAAATCTTTCACATTTCTAGCCAAAAATCACGTTTATAGGACCACTAGGAACCGAAATATATTGTCTATTCAAAATAATCGCGCGGGTGAACGAGTAAAAAACCCTGCGTCTCTACAGCGCCTTTACAGGTTTGGACACTCTCTACACGTTTTTTAGTCATTCACCCGCGCGATTATTTTGAATAGACAGTAACCTTTTTTTTACATTTTTCTCGAATAATGAAAATTGGTGATTTCCTAATAATTTCCCACCCCGCTAATCACTGTTCTAGCTCATCTCATCTAGAAGCCGAGATATAGGCGTTTTCAGACTAGTCTTTTTTGGGATTTTTAAAATTTTCGAAATTCAGAATTTTGATAAATTGTATGTTATCAGAAAGCTCTTTAAATTTCACAAATTTCTAAAAGAAAATCACTTTTCTAGACCCCCTTGGAGCCGAGATATGGACATTTGAAATTTGATGAGATGCAGACAACGAGACACTCTGACTGTCTGCG</canonical>
            <polymorphic>AAACTTCAAATGTCCATATCTCGGCTTCTAGTGGTCGTAGAGAACTGATTTTTGAATAGAAGTATTTGGATAGAAGTATTCAGTTTATGTTGATTTTCGAAAACTGATTAAATTCTTCGAAAATGTTTGTCTCGATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGACTCTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTAGGAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACGAGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATATCTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTCAAAGAACCTGCTTTTCTGATTATTGTTTAGATCTGCGATTTTTGAAATTTTCAAAAACCCCAAATTTTTGCTATTTTGTTTCTAAAACATAAAGCTMTAAAAATCTTTCACATTTCTAGCCAAAAATCACGTTTATAGGACCACTAGGAACCGAAATATATTGTCTATTCAAAATAATCGCGCGGGTGAACGAGTAAAAAACCCTGCGTCTCTACAGCGCCTTTACAGGTTTGGACACTCTCTACACGTTTTTTAGTCATTCACCCGCGCGATTATTTTGAATAGACAGTAACCTTTTTTTTACATTTTTCTCGAATAATGAAAATTGGTGATTTCCTAATAATTTCCCACCCCGCTAATCACTGTTCTAGCTCATCTCATCTAGAAGCCGAGATATAGGCGTTTTCAGACTAGTCTTTTTTGGGATTTTTAAAATTTTCGAAATTCAGAATTTTGATAAATTGTATGTTATCAGAAAGCTCTTTAAATTTCACAAATTTCTAAAAGAAAATCACTTTTCTAGACCCCCTTGGAGCCGAGATATGGACATTTGAAATTTGATGAGATGCAGACAACGAGACACTCTGACTGTCTGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTCAAAAACCCCAAAT</pcr_primer_p1>
		<pcr_primer_p2>GAAATCACCAATTTTCATTATTC</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>AATTTTCAAAAACCCCAAATTTTTGCTATTTTGTTTCTAAAACATAAAGCTCTAAAAATCTTTCACATTTCTAGCCAAAAATCACGTTTATAGGACCACTAGGAACCGAAATATATTGTCTATTCAAAATAATCGCGCGGGTGAACGAGTAAAAAACCCTGCGTCTCTACAGCGCCTTTACAGGTTTGGACACTCTCTACACGTTTTTTAGTCATTCACCCGCGCGATTATTTTGAATAGACAGTAACCTTTTTTTTACATTTTTCTCGAATAATGAAAATTGGTGATTTC</canonical_amplicon>
		<polymorphic_amplicon>AATTTTCAAAAACCCCAAATTTTTGCTATTTTGTTTCTAAAACATAAAGCTMTAAAAATCTTTCACATTTCTAGCCAAAAATCACGTTTATAGGACCACTAGGAACCGAAATATATTGTCTATTCAAAATAATCGCGCGGGTGAACGAGTAAAAAACCCTGCGTCTCTACAGCGCCTTTACAGGTTTGGACACTCTCTACACGTTTTTTAGTCATTCACCCGCGCGATTATTTTGAATAGACAGTAACCTTTTTTTTACATTTTTCTCGAATAATGAAAATTGGTGATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35592</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>965929</contig_pos>
        <strand>+</strand>
        <context>TMTAAAAATC[C/T]TTCACATTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACCCCAAATTTTTGCTATTTTGTTTCTAAAACATAAAGCTCTAAAAATC</left_flank>
        <right_flank>TTCACATTTCTAGCCAAAAATCACGTTTATAGGACCACTAGGAACCGAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTCCATATCTCGGCTTCTAGTGGTCGTAGAGAACTGATTTTTGAATAGAAGTATTTGGATAGAAGTATTCAGTTTATGTTGATTTTCGAAAACTGATTAAATTCTTCGAAAATGTTTGTCTCGATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGACTCTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTAGGAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACGAGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATATCTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTCAAAGAACCTGCTTTTCTGATTATTGTTTAGATCTGCGATTTTTGAAATTTTCAAAAACCCCAAATTTTTGCTATTTTGTTTCTAAAACATAAAGCTCTAAAAATCTTTCACATTTCTAGCCAAAAATCACGTTTATAGGACCACTAGGAACCGAAATATATTGTCTATTCAAAATAATCGCGCGGGTGAACGAGTAAAAAACCCTGCGTCTCTACAGCGCCTTTACAGGTTTGGACACTCTCTACACGTTTTTTAGTCATTCACCCGCGCGATTATTTTGAATAGACAGTAACCTTTTTTTTACATTTTTCTCGAATAATGAAAATTGGTGATTTCCTAATAATTTCCCACCCCGCTAATCACTGTTCTAGCTCATCTCATCTAGAAGCCGAGATATAGGCGTTTTCAGACTAGTCTTTTTTGGGATTTTTAAAATTTTCGAAATTCAGAATTTTGATAAATTGTATGTTATCAGAAAGCTCTTTAAATTTCACAAATTTCTAAAAGAAAATCACTTTTCTAGACCCCCTTGGAGCCGAGATATGGACATTTGAAATTTGATGAGATGCAGACAACGAGACACTCTGACTGTCTGCGTCTCTTCAA</canonical>
            <polymorphic>ATGTCCATATCTCGGCTTCTAGTGGTCGTAGAGAACTGATTTTTGAATAGAAGTATTTGGATAGAAGTATTCAGTTTATGTTGATTTTCGAAAACTGATTAAATTCTTCGAAAATGTTTGTCTCGATTTTTGAAAATTTAACAATTGTTGCTATTTTGTTTTCGGAACATAAGACTCTAAAAATTCTTTACATTTCTTGCCGAAAATAACGTTTCTAGGACTACTAGGAACCGAGATATAACCGTTTGAAGCTTTGAATGGAGAGACGCAGACAACGAGACTTTCTGACTCTCTGCGTCTCTCACCTCAAAACTTCAAATGTCCATATCTCGGCTCATAGTGGTCCTAGAGAAAAGATTTTTTGATAGAAATATTCAGTTTATGTTGATTTTTCAAAGAACCTGCTTTTCTGATTATTGTTTAGATCTGCGATTTTTGAAATTTTCAAAAACCCCAAATTTTTGCTATTTTGTTTCTAAAACATAAAGCTCTAAAAATCYTTCACATTTCTAGCCAAAAATCACGTTTATAGGACCACTAGGAACCGAAATATATTGTCTATTCAAAATAATCGCGCGGGTGAACGAGTAAAAAACCCTGCGTCTCTACAGCGCCTTTACAGGTTTGGACACTCTCTACACGTTTTTTAGTCATTCACCCGCGCGATTATTTTGAATAGACAGTAACCTTTTTTTTACATTTTTCTCGAATAATGAAAATTGGTGATTTCCTAATAATTTCCCACCCCGCTAATCACTGTTCTAGCTCATCTCATCTAGAAGCCGAGATATAGGCGTTTTCAGACTAGTCTTTTTTGGGATTTTTAAAATTTTCGAAATTCAGAATTTTGATAAATTGTATGTTATCAGAAAGCTCTTTAAATTTCACAAATTTCTAAAAGAAAATCACTTTTCTAGACCCCCTTGGAGCCGAGATATGGACATTTGAAATTTGATGAGATGCAGACAACGAGACACTCTGACTGTCTGCGTCTCTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCCCAAATTTTTGCTATTT</pcr_primer_p1>
		<pcr_primer_p2>GAAATCACCAATTTTCATTATTC</pcr_primer_p2>
		<pcr_amplicon_size>280</pcr_amplicon_size>
		<canonical_amplicon>ACCCCAAATTTTTGCTATTTTGTTTCTAAAACATAAAGCTCTAAAAATCTTTCACATTTCTAGCCAAAAATCACGTTTATAGGACCACTAGGAACCGAAATATATTGTCTATTCAAAATAATCGCGCGGGTGAACGAGTAAAAAACCCTGCGTCTCTACAGCGCCTTTACAGGTTTGGACACTCTCTACACGTTTTTTAGTCATTCACCCGCGCGATTATTTTGAATAGACAGTAACCTTTTTTTTACATTTTTCTCGAATAATGAAAATTGGTGATTTC</canonical_amplicon>
		<polymorphic_amplicon>ACCCCAAATTTTTGCTATTTTGTTTCTAAAACATAAAGCTCTAAAAATCYTTCACATTTCTAGCCAAAAATCACGTTTATAGGACCACTAGGAACCGAAATATATTGTCTATTCAAAATAATCGCGCGGGTGAACGAGTAAAAAACCCTGCGTCTCTACAGCGCCTTTACAGGTTTGGACACTCTCTACACGTTTTTTAGTCATTCACCCGCGCGATTATTTTGAATAGACAGTAACCTTTTTTTTACATTTTTCTCGAATAATGAAAATTGGTGATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35593</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>989379</contig_pos>
        <strand>+</strand>
        <context>TTAAATTTGT[G/T]GTGTAAATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAAATCTGGAATTCCAGGAAACTAAAAACTAGAAAACTTTTAAATTTGT</left_flank>
        <right_flank>GTGTAAATTTGAAAATTCTGAAATTCATAATAATTATTTTCAGGATGCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAAATTCGGGAAATTTGAAATTTTAGAAAATTACAAATTATCGAAAAATTGAAAAAAAATCAGAATTTCGAAATTTTAGAAGTTCTCAAATTCAGAGTTTTCAAAATTTTAAAAAATCTGAATTTCGGAATTTATGAAATTCAAAAGTTCAAAAATTAAATTTTTTAATTCTGAAAAAGATTCAATTTCGAAAAAATGGAAAATTTCAAAATTTCAAAAAATCTGAAATTCCAGAAACCCAAAAATTCAAAAATTACGAAAATTCTGGATATTCCGAAGTTCCAGGAATTTCGAAAAGAAAGTAAATTTTAAAAAAATCCTTTAAGAAGATTAAACAATCCGAAAAATTTCAGAAAGTTCAAATTTTCAGGAATCCTATGAAAATTCAAAAAATCAGATTTTTAGAAATTCCAAAATTTCGAAAATTTTTGAAAATTCAAAACTTCGGAAAATCTGGAATTCCAGGAAACTAAAAACTAGAAAACTTTTAAATTTGTCGTGTAAATTTGAAAATTCTGAAATTCATAATAATTATTTTCAGGATGCCTGGAATTCTGGAATTCCAGAAATAACGAATTTTCGAAAATTCAAAAAAACCGAAAATTAGACTTTTCAAAAATTCCAGAAATTCGAAATTTTCAAGAATTTTCGAAAATTTCGAAATATCGGAAAGTTAGGGCTTCTCAAATTTCAAATTTATAGTTTTTCAGAATTTTAGAATTTCCAGAATATCGAAAAACTCCATTCTGGAAATTCAGGAAACTCAAAAATGAAATTTTAAATTTTTCATGAAAATTCGAAAATTCTGAATTTCATAATTTTCAAAATTTCTAGAAATTCGAATATTCTGAATTTTTGGAAATTCAAAAATATCAGATTTTCAAAATTCCAGAAATTTTCCAAAAAATTTTAAGAAAGTCTGGAATTCTGAAATTCCAGAAATAACGAATTTTCGAATTTCCGAAAAATTAATATTTCGTAAAAATTCAAAAACAACG</canonical>
            <polymorphic>TAAAAATTCGGGAAATTTGAAATTTTAGAAAATTACAAATTATCGAAAAATTGAAAAAAAATCAGAATTTCGAAATTTTAGAAGTTCTCAAATTCAGAGTTTTCAAAATTTTAAAAAATCTGAATTTCGGAATTTATGAAATTCAAAAGTTCAAAAATTAAATTTTTTAATTCTGAAAAAGATTCAATTTCGAAAAAATGGAAAATTTCAAAATTTCAAAAAATCTGAAATTCCAGAAACCCAAAAATTCAAAAATTACGAAAATTCTGGATATTCCGAAGTTCCAGGAATTTCGAAAAGAAAGTAAATTTTAAAAAAATCCTTTAAGAAGATTAAACAATCCGAAAAATTTCAGAAAGTTCAAATTTTCAGGAATCCTATGAAAATTCAAAAAATCAGATTTTTAGAAATTCCAAAATTTCGAAAATTTTTGAAAATTCAAAACTTCGGAAAATCTGGAATTCCAGGAAACTAAAAACTAGAAAACTTTTAAATTTGTKGTGTAAATTTGAAAATTCTGAAATTCATAATAATTATTTTCAGGATGCCTGGAATTCTGGAATTCCAGAAATAACGAATTTTCGAAAATTCAAAAAAACCGAAAATTAGACTTTTCAAAAATTCCAGAAATTCGAAATTTTCAAGAATTTTCGAAAATTTCGAAATATCGGAAAGTTAGGGCTTCTCAAATTTCAAATTTATAGTTTTTCAGAATTTTAGAATTTCCAGAATATCGAAAAACTCCATTCTGGAAATTCAGGAAACTCAAAAATGAAATTTTAAATTTTTCATGAAAATTCGAAAATTCTGAATTTCATAATTTTCAAAATTTCTAGAAATTCGAATATTCTGAATTTTTGGAAATTCAAAAATATCAGATTTTCAAAATTCCAGAAATTTTCCAAAAAATTTTAAGAAAGTCTGGAATTCTGAAATTCCAGAAATAACGAATTTTCGAATTTCCGAAAAATTAATATTTCGTAAAAATTCAAAAACAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCCTTTAAGAAGATTAAACAA</pcr_primer_p1>
		<pcr_primer_p2>ATTCGAAAATTCGTTATTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>645</pcr_amplicon_size>
		<canonical_amplicon>AAAATCCTTTAAGAAGATTAAACAATCCGAAAAATTTCAGAAAGTTCAAATTTTCAGGAATCCTATGAAAATTCAAAAAATCAGATTTTTAGAAATTCCAAAATTTCGAAAATTTTTGAAAATTCAAAACTTCGGAAAATCTGGAATTCCAGGAAACTAAAAACTAGAAAACTTTTAAATTTGTCGTGTAAATTTGAAAATTCTGAAATTCATAATAATTATTTTCAGGATGCCTGGAATTCTGGAATTCCAGAAATAACGAATTTTCGAAAATTCAAAAAAACCGAAAATTAGACTTTTCAAAAATTCCAGAAATTCGAAATTTTCAAGAATTTTCGAAAATTTCGAAATATCGGAAAGTTAGGGCTTCTCAAATTTCAAATTTATAGTTTTTCAGAATTTTAGAATTTCCAGAATATCGAAAAACTCCATTCTGGAAATTCAGGAAACTCAAAAATGAAATTTTAAATTTTTCATGAAAATTCGAAAATTCTGAATTTCATAATTTTCAAAATTTCTAGAAATTCGAATATTCTGAATTTTTGGAAATTCAAAAATATCAGATTTTCAAAATTCCAGAAATTTTCCAAAAAATTTTAAGAAAGTCTGGAATTCTGAAATTCCAGAAATAACGAATTTTCGAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAATCCTTTAAGAAGATTAAACAATCCGAAAAATTTCAGAAAGTTCAAATTTTCAGGAATCCTATGAAAATTCAAAAAATCAGATTTTTAGAAATTCCAAAATTTCGAAAATTTTTGAAAATTCAAAACTTCGGAAAATCTGGAATTCCAGGAAACTAAAAACTAGAAAACTTTTAAATTTGTKGTGTAAATTTGAAAATTCTGAAATTCATAATAATTATTTTCAGGATGCCTGGAATTCTGGAATTCCAGAAATAACGAATTTTCGAAAATTCAAAAAAACCGAAAATTAGACTTTTCAAAAATTCCAGAAATTCGAAATTTTCAAGAATTTTCGAAAATTTCGAAATATCGGAAAGTTAGGGCTTCTCAAATTTCAAATTTATAGTTTTTCAGAATTTTAGAATTTCCAGAATATCGAAAAACTCCATTCTGGAAATTCAGGAAACTCAAAAATGAAATTTTAAATTTTTCATGAAAATTCGAAAATTCTGAATTTCATAATTTTCAAAATTTCTAGAAATTCGAATATTCTGAATTTTTGGAAATTCAAAAATATCAGATTTTCAAAATTCCAGAAATTTTCCAAAAAATTTTAAGAAAGTCTGGAATTCTGAAATTCCAGAAATAACGAATTTTCGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35594</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>989810</contig_pos>
        <strand>+</strand>
        <context>tctggaattc[G/T]gaaaTTCCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCAAAATTCCAGAAATTTTCCAAAAAATTTTAAGAAAGTCTGGAATTC</left_flank>
        <right_flank>GAAATTCCAGAAATAACGAATTTTCGAATTTCCGAAAAATTAATATTTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAATTCAAAACTTCGGAAAATCTGGAATTCCAGGAAACTAAAAACTAGAAAACTTTTAAATTTGTCGTGTAAATTTGAAAATTCTGAAATTCATAATAATTATTTTCAGGATGCCTGGAATTCTGGAATTCCAGAAATAACGAATTTTCGAAAATTCAAAAAAACCGAAAATTAGACTTTTCAAAAATTCCAGAAATTCGAAATTTTCAAGAATTTTCGAAAATTTCGAAATATCGGAAAGTTAGGGCTTCTCAAATTTCAAATTTATAGTTTTTCAGAATTTTAGAATTTCCAGAATATCGAAAAACTCCATTCTGGAAATTCAGGAAACTCAAAAATGAAATTTTAAATTTTTCATGAAAATTCGAAAATTCTGAATTTCATAATTTTCAAAATTTCTAGAAATTCGAATATTCTGAATTTTTGGAAATTCAAAAATATCAGATTTTCAAAATTCCAGAAATTTTCCAAAAAATTTTAAGAAAGTCTGGAATTCTGAAATTCCAGAAATAACGAATTTTCGAATTTCCGAAAAATTAATATTTCGTAAAAATTCAAAAACAACGAAATTTAGGCTTTCCAAAAATTCCAGAAATTCAAAATTTCAGGAATTTTTGAAAACTTTCAAATTTCAAGATATTCAGATATTTCAAAAAAACTAAGTTCAAATTTTCACATTTTTGAAAATTTCGAAAAATAGTCAAAATTTCAAAAAAATCAATTTTTTTCAGCATTTTCCAAATTCAAAATTCCTATTTTCGAAATTGTTTTCTTTTCTCTAAATCATCTACAGTAATCCCTACCTGTGCATTGACCCGATAAATCATTAGAAAAATACAGAAGACCGTGTTCATTGTTTCCGAGAAATTCCAATTTCGGGAGGACCAGTTTCGAAATAATACACACACAGAAAAAGAGTCAAGAAGAGAGCACATGCACGTCTTCTGAATCGATTCTAAAAGAGAGAGAGATGGAGACGCAGAGAAGTGAGGGCGAG</canonical>
            <polymorphic>TGAAAATTCAAAACTTCGGAAAATCTGGAATTCCAGGAAACTAAAAACTAGAAAACTTTTAAATTTGTCGTGTAAATTTGAAAATTCTGAAATTCATAATAATTATTTTCAGGATGCCTGGAATTCTGGAATTCCAGAAATAACGAATTTTCGAAAATTCAAAAAAACCGAAAATTAGACTTTTCAAAAATTCCAGAAATTCGAAATTTTCAAGAATTTTCGAAAATTTCGAAATATCGGAAAGTTAGGGCTTCTCAAATTTCAAATTTATAGTTTTTCAGAATTTTAGAATTTCCAGAATATCGAAAAACTCCATTCTGGAAATTCAGGAAACTCAAAAATGAAATTTTAAATTTTTCATGAAAATTCGAAAATTCTGAATTTCATAATTTTCAAAATTTCTAGAAATTCGAATATTCTGAATTTTTGGAAATTCAAAAATATCAGATTTTCAAAATTCCAGAAATTTTCCAAAAAATTTTAAGAAAGTCTGGAATTCKGAAATTCCAGAAATAACGAATTTTCGAATTTCCGAAAAATTAATATTTCGTAAAAATTCAAAAACAACGAAATTTAGGCTTTCCAAAAATTCCAGAAATTCAAAATTTCAGGAATTTTTGAAAACTTTCAAATTTCAAGATATTCAGATATTTCAAAAAAACTAAGTTCAAATTTTCACATTTTTGAAAATTTCGAAAAATAGTCAAAATTTCAAAAAAATCAATTTTTTTCAGCATTTTCCAAATTCAAAATTCCTATTTTCGAAATTGTTTTCTTTTCTCTAAATCATCTACAGTAATCCCTACCTGTGCATTGACCCGATAAATCATTAGAAAAATACAGAAGACCGTGTTCATTGTTTCCGAGAAATTCCAATTTCGGGAGGACCAGTTTCGAAATAATACACACACAGAAAAAGAGTCAAGAAGAGAGCACATGCACGTCTTCTGAATCGATTCTAAAAGAGAGAGAGATGGAGACGCAGAGAAGTGAGGGCGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCCTTTAAGAAGATTAAACAA</pcr_primer_p1>
		<pcr_primer_p2>AATGTGAAAATTTGAACTTAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>798</pcr_amplicon_size>
		<canonical_amplicon>CTGAAATTCCAGAAATAACGAATTTTCGAATTTCCGAAAAATTAATATTTCGTAAAAATTCAAAAACAACGAAATTTAGGCTTTCCAAAAATTCCAGAAATTCAAAATTTCAGGAATTTTTGAAAACTTTCAAATTTCAAGATATTCAGATATTTCAAAAAAACTAAGTTCAAATTTTCACATT</canonical_amplicon>
		<polymorphic_amplicon>CKGAAATTCCAGAAATAACGAATTTTCGAATTTCCGAAAAATTAATATTTCGTAAAAATTCAAAAACAACGAAATTTAGGCTTTCCAAAAATTCCAGAAATTCAAAATTTCAGGAATTTTTGAAAACTTTCAAATTTCAAGATATTCAGATATTTCAAAAAAACTAAGTTCAAATTTTCACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35595</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>989864</contig_pos>
        <strand>+</strand>
        <context>TATTTCGTAA[A/T]AATTCAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTCCAGAAATAACGAATTTTCGAATTTCCGAAAAATTAATATTTCGTAA</left_flank>
        <right_flank>AATTCAAAAACAACGAAATTTAGGCTTTCCAAAAATTCCAGAAATTCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTTTAAATTTGTCGTGTAAATTTGAAAATTCTGAAATTCATAATAATTATTTTCAGGATGCCTGGAATTCTGGAATTCCAGAAATAACGAATTTTCGAAAATTCAAAAAAACCGAAAATTAGACTTTTCAAAAATTCCAGAAATTCGAAATTTTCAAGAATTTTCGAAAATTTCGAAATATCGGAAAGTTAGGGCTTCTCAAATTTCAAATTTATAGTTTTTCAGAATTTTAGAATTTCCAGAATATCGAAAAACTCCATTCTGGAAATTCAGGAAACTCAAAAATGAAATTTTAAATTTTTCATGAAAATTCGAAAATTCTGAATTTCATAATTTTCAAAATTTCTAGAAATTCGAATATTCTGAATTTTTGGAAATTCAAAAATATCAGATTTTCAAAATTCCAGAAATTTTCCAAAAAATTTTAAGAAAGTCTGGAATTCTGAAATTCCAGAAATAACGAATTTTCGAATTTCCGAAAAATTAATATTTCGTAAAAATTCAAAAACAACGAAATTTAGGCTTTCCAAAAATTCCAGAAATTCAAAATTTCAGGAATTTTTGAAAACTTTCAAATTTCAAGATATTCAGATATTTCAAAAAAACTAAGTTCAAATTTTCACATTTTTGAAAATTTCGAAAAATAGTCAAAATTTCAAAAAAATCAATTTTTTTCAGCATTTTCCAAATTCAAAATTCCTATTTTCGAAATTGTTTTCTTTTCTCTAAATCATCTACAGTAATCCCTACCTGTGCATTGACCCGATAAATCATTAGAAAAATACAGAAGACCGTGTTCATTGTTTCCGAGAAATTCCAATTTCGGGAGGACCAGTTTCGAAATAATACACACACAGAAAAAGAGTCAAGAAGAGAGCACATGCACGTCTTCTGAATCGATTCTAAAAGAGAGAGAGATGGAGACGCAGAGAAGTGAGGGCGAGAGAGTGTGAGGAATGGAGAGACGCAGAGAAAAGAAGGAGGAGGAAAAGCTGCTC</canonical>
            <polymorphic>ACTTTTAAATTTGTCGTGTAAATTTGAAAATTCTGAAATTCATAATAATTATTTTCAGGATGCCTGGAATTCTGGAATTCCAGAAATAACGAATTTTCGAAAATTCAAAAAAACCGAAAATTAGACTTTTCAAAAATTCCAGAAATTCGAAATTTTCAAGAATTTTCGAAAATTTCGAAATATCGGAAAGTTAGGGCTTCTCAAATTTCAAATTTATAGTTTTTCAGAATTTTAGAATTTCCAGAATATCGAAAAACTCCATTCTGGAAATTCAGGAAACTCAAAAATGAAATTTTAAATTTTTCATGAAAATTCGAAAATTCTGAATTTCATAATTTTCAAAATTTCTAGAAATTCGAATATTCTGAATTTTTGGAAATTCAAAAATATCAGATTTTCAAAATTCCAGAAATTTTCCAAAAAATTTTAAGAAAGTCTGGAATTCTGAAATTCCAGAAATAACGAATTTTCGAATTTCCGAAAAATTAATATTTCGTAAWAATTCAAAAACAACGAAATTTAGGCTTTCCAAAAATTCCAGAAATTCAAAATTTCAGGAATTTTTGAAAACTTTCAAATTTCAAGATATTCAGATATTTCAAAAAAACTAAGTTCAAATTTTCACATTTTTGAAAATTTCGAAAAATAGTCAAAATTTCAAAAAAATCAATTTTTTTCAGCATTTTCCAAATTCAAAATTCCTATTTTCGAAATTGTTTTCTTTTCTCTAAATCATCTACAGTAATCCCTACCTGTGCATTGACCCGATAAATCATTAGAAAAATACAGAAGACCGTGTTCATTGTTTCCGAGAAATTCCAATTTCGGGAGGACCAGTTTCGAAATAATACACACACAGAAAAAGAGTCAAGAAGAGAGCACATGCACGTCTTCTGAATCGATTCTAAAAGAGAGAGAGATGGAGACGCAGAGAAGTGAGGGCGAGAGAGTGTGAGGAATGGAGAGACGCAGAGAAAAGAAGGAGGAGGAAAAGCTGCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>186 118 40 36 33 33 33 31 28 24 22 19 18 18 18 17 17 17 16 16 16 15 13 13 12 10 10 10 10 10 9 9 9 9 8 8 8 8 8 8 8 7 7 7 7 7 7 7</canonical_bands>
                <polymorphic_bands>186 118 44 40 36 33 33 33 31 24 22 19 18 18 18 17 17 17 16 16 15 13 13 12 10 10 10 10 10 9 9 9 9 8 8 8 8 8 8 8 7 7 7 7 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATCCTTTAAGAAGATTAAACAA</pcr_primer_p1>
		<pcr_primer_p2>AATGTGAAAATTTGAACTTAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>798</pcr_amplicon_size>
		<canonical_amplicon>AAAATTCAAAAACAACGAAATTTAGGCTTTCCAAAAATTCCAGAAATTCAAAATTTCAGGAATTTTTGAAAACTTTCAAATTTCAAGATATTCAGATATTTCAAAAAAACTAAGTTCAAATTTTCACATT</canonical_amplicon>
		<polymorphic_amplicon>AWAATTCAAAAACAACGAAATTTAGGCTTTCCAAAAATTCCAGAAATTCAAAATTTCAGGAATTTTTGAAAACTTTCAAATTTCAAGATATTCAGATATTTCAAAAAAACTAAGTTCAAATTTTCACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35596</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>989879</contig_pos>
        <strand>+</strand>
        <context>CAAAAACAAC[A/G]AAATTTAGGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTTCGAATTTCCGAAAAATTAATATTTCGTAAAAATTCAAAAACAAC</left_flank>
        <right_flank>AAATTTAGGCTTTCCAAAAATTCCAGAAATTCAAAATTTCAGGAATTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTAAATTTGAAAATTCTGAAATTCATAATAATTATTTTCAGGATGCCTGGAATTCTGGAATTCCAGAAATAACGAATTTTCGAAAATTCAAAAAAACCGAAAATTAGACTTTTCAAAAATTCCAGAAATTCGAAATTTTCAAGAATTTTCGAAAATTTCGAAATATCGGAAAGTTAGGGCTTCTCAAATTTCAAATTTATAGTTTTTCAGAATTTTAGAATTTCCAGAATATCGAAAAACTCCATTCTGGAAATTCAGGAAACTCAAAAATGAAATTTTAAATTTTTCATGAAAATTCGAAAATTCTGAATTTCATAATTTTCAAAATTTCTAGAAATTCGAATATTCTGAATTTTTGGAAATTCAAAAATATCAGATTTTCAAAATTCCAGAAATTTTCCAAAAAATTTTAAGAAAGTCTGGAATTCTGAAATTCCAGAAATAACGAATTTTCGAATTTCCGAAAAATTAATATTTCGTAAAAATTCAAAAACAACGAAATTTAGGCTTTCCAAAAATTCCAGAAATTCAAAATTTCAGGAATTTTTGAAAACTTTCAAATTTCAAGATATTCAGATATTTCAAAAAAACTAAGTTCAAATTTTCACATTTTTGAAAATTTCGAAAAATAGTCAAAATTTCAAAAAAATCAATTTTTTTCAGCATTTTCCAAATTCAAAATTCCTATTTTCGAAATTGTTTTCTTTTCTCTAAATCATCTACAGTAATCCCTACCTGTGCATTGACCCGATAAATCATTAGAAAAATACAGAAGACCGTGTTCATTGTTTCCGAGAAATTCCAATTTCGGGAGGACCAGTTTCGAAATAATACACACACAGAAAAAGAGTCAAGAAGAGAGCACATGCACGTCTTCTGAATCGATTCTAAAAGAGAGAGAGATGGAGACGCAGAGAAGTGAGGGCGAGAGAGTGTGAGGAATGGAGAGACGCAGAGAAAAGAAGGAGGAGGAAAAGCTGCTCTCTTCATTTTCCATA</canonical>
            <polymorphic>GTGTAAATTTGAAAATTCTGAAATTCATAATAATTATTTTCAGGATGCCTGGAATTCTGGAATTCCAGAAATAACGAATTTTCGAAAATTCAAAAAAACCGAAAATTAGACTTTTCAAAAATTCCAGAAATTCGAAATTTTCAAGAATTTTCGAAAATTTCGAAATATCGGAAAGTTAGGGCTTCTCAAATTTCAAATTTATAGTTTTTCAGAATTTTAGAATTTCCAGAATATCGAAAAACTCCATTCTGGAAATTCAGGAAACTCAAAAATGAAATTTTAAATTTTTCATGAAAATTCGAAAATTCTGAATTTCATAATTTTCAAAATTTCTAGAAATTCGAATATTCTGAATTTTTGGAAATTCAAAAATATCAGATTTTCAAAATTCCAGAAATTTTCCAAAAAATTTTAAGAAAGTCTGGAATTCTGAAATTCCAGAAATAACGAATTTTCGAATTTCCGAAAAATTAATATTTCGTAAAAATTCAAAAACAACRAAATTTAGGCTTTCCAAAAATTCCAGAAATTCAAAATTTCAGGAATTTTTGAAAACTTTCAAATTTCAAGATATTCAGATATTTCAAAAAAACTAAGTTCAAATTTTCACATTTTTGAAAATTTCGAAAAATAGTCAAAATTTCAAAAAAATCAATTTTTTTCAGCATTTTCCAAATTCAAAATTCCTATTTTCGAAATTGTTTTCTTTTCTCTAAATCATCTACAGTAATCCCTACCTGTGCATTGACCCGATAAATCATTAGAAAAATACAGAAGACCGTGTTCATTGTTTCCGAGAAATTCCAATTTCGGGAGGACCAGTTTCGAAATAATACACACACAGAAAAAGAGTCAAGAAGAGAGCACATGCACGTCTTCTGAATCGATTCTAAAAGAGAGAGAGATGGAGACGCAGAGAAGTGAGGGCGAGAGAGTGTGAGGAATGGAGAGACGCAGAGAAAAGAAGGAGGAGGAAAAGCTGCTCTCTTCATTTTCCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCCTTTAAGAAGATTAAACAA</pcr_primer_p1>
		<pcr_primer_p2>AATGTGAAAATTTGAACTTAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>798</pcr_amplicon_size>
		<canonical_amplicon>CGAAATTTAGGCTTTCCAAAAATTCCAGAAATTCAAAATTTCAGGAATTTTTGAAAACTTTCAAATTTCAAGATATTCAGATATTTCAAAAAAACTAAGTTCAAATTTTCACATT</canonical_amplicon>
		<polymorphic_amplicon>CRAAATTTAGGCTTTCCAAAAATTCCAGAAATTCAAAATTTCAGGAATTTTTGAAAACTTTCAAATTTCAAGATATTCAGATATTTCAAAAAAACTAAGTTCAAATTTTCACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35597</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>989902</contig_pos>
        <strand>+</strand>
        <context>TCCAAAAATT[C/T]CAGAAATTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATATTTCGTAAAAATTCAAAAACAACGAAATTTAGGCTTTCCAAAAATT</left_flank>
        <right_flank>CAGAAATTCAAAATTTCAGGAATTTTTGAAAACTTTCAAATTTCAAGATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCATAATAATTATTTTCAGGATGCCTGGAATTCTGGAATTCCAGAAATAACGAATTTTCGAAAATTCAAAAAAACCGAAAATTAGACTTTTCAAAAATTCCAGAAATTCGAAATTTTCAAGAATTTTCGAAAATTTCGAAATATCGGAAAGTTAGGGCTTCTCAAATTTCAAATTTATAGTTTTTCAGAATTTTAGAATTTCCAGAATATCGAAAAACTCCATTCTGGAAATTCAGGAAACTCAAAAATGAAATTTTAAATTTTTCATGAAAATTCGAAAATTCTGAATTTCATAATTTTCAAAATTTCTAGAAATTCGAATATTCTGAATTTTTGGAAATTCAAAAATATCAGATTTTCAAAATTCCAGAAATTTTCCAAAAAATTTTAAGAAAGTCTGGAATTCTGAAATTCCAGAAATAACGAATTTTCGAATTTCCGAAAAATTAATATTTCGTAAAAATTCAAAAACAACGAAATTTAGGCTTTCCAAAAATTCCAGAAATTCAAAATTTCAGGAATTTTTGAAAACTTTCAAATTTCAAGATATTCAGATATTTCAAAAAAACTAAGTTCAAATTTTCACATTTTTGAAAATTTCGAAAAATAGTCAAAATTTCAAAAAAATCAATTTTTTTCAGCATTTTCCAAATTCAAAATTCCTATTTTCGAAATTGTTTTCTTTTCTCTAAATCATCTACAGTAATCCCTACCTGTGCATTGACCCGATAAATCATTAGAAAAATACAGAAGACCGTGTTCATTGTTTCCGAGAAATTCCAATTTCGGGAGGACCAGTTTCGAAATAATACACACACAGAAAAAGAGTCAAGAAGAGAGCACATGCACGTCTTCTGAATCGATTCTAAAAGAGAGAGAGATGGAGACGCAGAGAAGTGAGGGCGAGAGAGTGTGAGGAATGGAGAGACGCAGAGAAAAGAAGGAGGAGGAAAAGCTGCTCTCTTCATTTTCCATAATGACGAATGGGGGTGGATGGAT</canonical>
            <polymorphic>TTCATAATAATTATTTTCAGGATGCCTGGAATTCTGGAATTCCAGAAATAACGAATTTTCGAAAATTCAAAAAAACCGAAAATTAGACTTTTCAAAAATTCCAGAAATTCGAAATTTTCAAGAATTTTCGAAAATTTCGAAATATCGGAAAGTTAGGGCTTCTCAAATTTCAAATTTATAGTTTTTCAGAATTTTAGAATTTCCAGAATATCGAAAAACTCCATTCTGGAAATTCAGGAAACTCAAAAATGAAATTTTAAATTTTTCATGAAAATTCGAAAATTCTGAATTTCATAATTTTCAAAATTTCTAGAAATTCGAATATTCTGAATTTTTGGAAATTCAAAAATATCAGATTTTCAAAATTCCAGAAATTTTCCAAAAAATTTTAAGAAAGTCTGGAATTCTGAAATTCCAGAAATAACGAATTTTCGAATTTCCGAAAAATTAATATTTCGTAAAAATTCAAAAACAACGAAATTTAGGCTTTCCAAAAATTYCAGAAATTCAAAATTTCAGGAATTTTTGAAAACTTTCAAATTTCAAGATATTCAGATATTTCAAAAAAACTAAGTTCAAATTTTCACATTTTTGAAAATTTCGAAAAATAGTCAAAATTTCAAAAAAATCAATTTTTTTCAGCATTTTCCAAATTCAAAATTCCTATTTTCGAAATTGTTTTCTTTTCTCTAAATCATCTACAGTAATCCCTACCTGTGCATTGACCCGATAAATCATTAGAAAAATACAGAAGACCGTGTTCATTGTTTCCGAGAAATTCCAATTTCGGGAGGACCAGTTTCGAAATAATACACACACAGAAAAAGAGTCAAGAAGAGAGCACATGCACGTCTTCTGAATCGATTCTAAAAGAGAGAGAGATGGAGACGCAGAGAAGTGAGGGCGAGAGAGTGTGAGGAATGGAGAGACGCAGAGAAAAGAAGGAGGAGGAAAAGCTGCTCTCTTCATTTTCCATAATGACGAATGGGGGTGGATGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>224 118 40 36 33 33 33 29 28 24 22 19 18 18 18 17 17 17 16 16 16 15 13 12 10 10 10 10 10 9 9 9 9 8 8 8 8 8 7 7 7 7 7 7</canonical_bands>
                <polymorphic_bands>224 118 40 36 33 33 33 29 28 26 24 22 19 18 18 18 17 17 16 16 16 15 13 12 10 10 10 10 10 9 9 9 8 8 8 8 8 7 7 7 7 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>244 169 85 84 59 58 43 43 32 31 27 23 18 18 17 16 16 9 8</canonical_bands>
                <polymorphic_bands>244 169 102 84 59 58 43 43 32 31 27 23 18 18 16 16 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATCCTTTAAGAAGATTAAACAA</pcr_primer_p1>
		<pcr_primer_p2>AATGTGAAAATTTGAACTTAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>798</pcr_amplicon_size>
		<canonical_amplicon>TCCAGAAATTCAAAATTTCAGGAATTTTTGAAAACTTTCAAATTTCAAGATATTCAGATATTTCAAAAAAACTAAGTTCAAATTTTCACATT</canonical_amplicon>
		<polymorphic_amplicon>TYCAGAAATTCAAAATTTCAGGAATTTTTGAAAACTTTCAAATTTCAAGATATTCAGATATTTCAAAAAAACTAAGTTCAAATTTTCACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35598</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>1000633</contig_pos>
        <strand>+</strand>
        <context>GAAACTGAGG[A/T]GTATTTTAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGTTTTGGATTTTAAATTTTAAAGAAAATTAAAGAAGGGAAACTGAGG</left_flank>
        <right_flank>GTATTTTAAGCTATCGAGCTAAAAGATTGATAAAGGAAGAAGAGAGTTAC</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCAAATTTTTCAAAAAAAGGAATTTTTCTCAAAAAAAAGTCGAATTTTAAAGGTATAAAATAATCAGTTTTCTAGCGAAAAAAAAAGCAAAAAATCATCATAAGGAAGTGGTAAAAATTTCGAAATTTGACAAAAAAAAATAGGAAAAAATTCAAAAACTTTATTAGCAAAAATCAGCATATTAAGGTCGAAAAATAGGGGAAAAGTCAGATTTATCGATAATTTTAGTGTTCGACATCCGGTTTATCAGCGAAATTTGCCATTTTTATCGATTGTGAAATCAATATTAAAGCGAGAAAATGAGTCATACGCTTTTCGGTTTTTTCCTCGCTTGGCGCCTCTCGCGATCCTTGGTGAAAACGGAAAGTGCGTCAGTGGCGATGGCTGGCGCGCTTTGTAATATTCCGGCGGGAAGGTGACAAATTAGTGGGTCTTGCTGATAAGGGGCTTTGTTTTGGATTTTAAATTTTAAAGAAAATTAAAGAAGGGAAACTGAGGAGTATTTTAAGCTATCGAGCTAAAAGATTGATAAAGGAAGAAGAGAGTTACAGAGCTTAGAAGTTGGAGTATTTTTTATTTACCGTATTTCTAAAAGCCTCCATGTTCCAGAAAAATTGTAGGGGTGAAGTAGATCAGAAAATACACATTACTTAGGTTTTCCAGTCATTTTCTCTTTGTTTTTTCCATGTCAAAGTTCACGAAAAAGAATTTCAGATGTCTGAAAATGTGTTTCAGATTTTTGAAAATCGAAATACTTTGAAATTTGGAAAGTATACGGTATAATAAATACCAAACAAAAATGGAGATCTGGGTCTAAAGTTGTCAAATATTCTAGAAAATTTGAGCTAGATGATCTATGTCGTTTGAAGACATGGACCTAATTTTGAAGGTAGGTAGTCCCAAACGGAATATCTTCTTTGTATGATTTTTTCTTCAAAAGTTGTTAACTACAAAATTGAAGCTCTATTGTTGTTTGGTATCTTCTGAAAATTTTAATTT</canonical>
            <polymorphic>GTCAAATTTTTCAAAAAAAGGAATTTTTCTCAAAAAAAAGTCGAATTTTAAAGGTATAAAATAATCAGTTTTCTAGCGAAAAAAAAAGCAAAAAATCATCATAAGGAAGTGGTAAAAATTTCGAAATTTGACAAAAAAAAATAGGAAAAAATTCAAAAACTTTATTAGCAAAAATCAGCATATTAAGGTCGAAAAATAGGGGAAAAGTCAGATTTATCGATAATTTTAGTGTTCGACATCCGGTTTATCAGCGAAATTTGCCATTTTTATCGATTGTGAAATCAATATTAAAGCGAGAAAATGAGTCATACGCTTTTCGGTTTTTTCCTCGCTTGGCGCCTCTCGCGATCCTTGGTGAAAACGGAAAGTGCGTCAGTGGCGATGGCTGGCGCGCTTTGTAATATTCCGGCGGGAAGGTGACAAATTAGTGGGTCTTGCTGATAAGGGGCTTTGTTTTGGATTTTAAATTTTAAAGAAAATTAAAGAAGGGAAACTGAGGWGTATTTTAAGCTATCGAGCTAAAAGATTGATAAAGGAAGAAGAGAGTTACAGAGCTTAGAAGTTGGAGTATTTTTTATTTACCGTATTTCTAAAAGCCTCCATGTTCCAGAAAAATTGTAGGGGTGAAGTAGATCAGAAAATACACATTACTTAGGTTTTCCAGTCATTTTCTCTTTGTTTTTTCCATGTCAAAGTTCACGAAAAAGAATTTCAGATGTCTGAAAATGTGTTTCAGATTTTTGAAAATCGAAATACTTTGAAATTTGGAAAGTATACGGTATAATAAATACCAAACAAAAATGGAGATCTGGGTCTAAAGTTGTCAAATATTCTAGAAAATTTGAGCTAGATGATCTATGTCGTTTGAAGACATGGACCTAATTTTGAAGGTAGGTAGTCCCAAACGGAATATCTTCTTTGTATGATTTTTTCTTCAAAAGTTGTTAACTACAAAATTGAAGCTCTATTGTTGTTTGGTATCTTCTGAAAATTTTAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTAGTGGGTCTTGCTGATAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAAATGACTGGAAAACCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATTAGTGGGTCTTGCTGATAAGGGGCTTTGTTTTGGATTTTAAATTTTAAAGAAAATTAAAGAAGGGAAACTGAGGAGTATTTTAAGCTATCGAGCTAAAAGATTGATAAAGGAAGAAGAGAGTTACAGAGCTTAGAAGTTGGAGTATTTTTTATTTACCGTATTTCTAAAAGCCTCCATGTTCCAGAAAAATTGTAGGGGTGAAGTAGATCAGAAAATACACATTACTTAGGTTTTCCAGTCATTTTCT</canonical_amplicon>
		<polymorphic_amplicon>AATTAGTGGGTCTTGCTGATAAGGGGCTTTGTTTTGGATTTTAAATTTTAAAGAAAATTAAAGAAGGGAAACTGAGGWGTATTTTAAGCTATCGAGCTAAAAGATTGATAAAGGAAGAAGAGAGTTACAGAGCTTAGAAGTTGGAGTATTTTTTATTTACCGTATTTCTAAAAGCCTCCATGTTCCAGAAAAATTGTAGGGGTGAAGTAGATCAGAAAATACACATTACTTAGGTTTTCCAGTCATTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35599</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>1000698</contig_pos>
        <strand>+</strand>
        <context>CTTAGAAGTT[A/G]GAGTATTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAGCTAAAAGATTGATAAAGGAAGAAGAGAGTTACAGAGCTTAGAAGTT</left_flank>
        <right_flank>GAGTATTTTTTATTTACCGTATTTCTAAAAGCCTCCATGTTCCAGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTTTTCTAGCGAAAAAAAAAGCAAAAAATCATCATAAGGAAGTGGTAAAAATTTCGAAATTTGACAAAAAAAAATAGGAAAAAATTCAAAAACTTTATTAGCAAAAATCAGCATATTAAGGTCGAAAAATAGGGGAAAAGTCAGATTTATCGATAATTTTAGTGTTCGACATCCGGTTTATCAGCGAAATTTGCCATTTTTATCGATTGTGAAATCAATATTAAAGCGAGAAAATGAGTCATACGCTTTTCGGTTTTTTCCTCGCTTGGCGCCTCTCGCGATCCTTGGTGAAAACGGAAAGTGCGTCAGTGGCGATGGCTGGCGCGCTTTGTAATATTCCGGCGGGAAGGTGACAAATTAGTGGGTCTTGCTGATAAGGGGCTTTGTTTTGGATTTTAAATTTTAAAGAAAATTAAAGAAGGGAAACTGAGGAGTATTTTAAGCTATCGAGCTAAAAGATTGATAAAGGAAGAAGAGAGTTACAGAGCTTAGAAGTTGGAGTATTTTTTATTTACCGTATTTCTAAAAGCCTCCATGTTCCAGAAAAATTGTAGGGGTGAAGTAGATCAGAAAATACACATTACTTAGGTTTTCCAGTCATTTTCTCTTTGTTTTTTCCATGTCAAAGTTCACGAAAAAGAATTTCAGATGTCTGAAAATGTGTTTCAGATTTTTGAAAATCGAAATACTTTGAAATTTGGAAAGTATACGGTATAATAAATACCAAACAAAAATGGAGATCTGGGTCTAAAGTTGTCAAATATTCTAGAAAATTTGAGCTAGATGATCTATGTCGTTTGAAGACATGGACCTAATTTTGAAGGTAGGTAGTCCCAAACGGAATATCTTCTTTGTATGATTTTTTCTTCAAAAGTTGTTAACTACAAAATTGAAGCTCTATTGTTGTTTGGTATCTTCTGAAAATTTTAATTTGGTCTGAAAATTCGTAATTATTTTTCAGGCATTTAAATAGACTTGCTTTAAACGAAACACGCTTA</canonical>
            <polymorphic>CAGTTTTCTAGCGAAAAAAAAAGCAAAAAATCATCATAAGGAAGTGGTAAAAATTTCGAAATTTGACAAAAAAAAATAGGAAAAAATTCAAAAACTTTATTAGCAAAAATCAGCATATTAAGGTCGAAAAATAGGGGAAAAGTCAGATTTATCGATAATTTTAGTGTTCGACATCCGGTTTATCAGCGAAATTTGCCATTTTTATCGATTGTGAAATCAATATTAAAGCGAGAAAATGAGTCATACGCTTTTCGGTTTTTTCCTCGCTTGGCGCCTCTCGCGATCCTTGGTGAAAACGGAAAGTGCGTCAGTGGCGATGGCTGGCGCGCTTTGTAATATTCCGGCGGGAAGGTGACAAATTAGTGGGTCTTGCTGATAAGGGGCTTTGTTTTGGATTTTAAATTTTAAAGAAAATTAAAGAAGGGAAACTGAGGAGTATTTTAAGCTATCGAGCTAAAAGATTGATAAAGGAAGAAGAGAGTTACAGAGCTTAGAAGTTRGAGTATTTTTTATTTACCGTATTTCTAAAAGCCTCCATGTTCCAGAAAAATTGTAGGGGTGAAGTAGATCAGAAAATACACATTACTTAGGTTTTCCAGTCATTTTCTCTTTGTTTTTTCCATGTCAAAGTTCACGAAAAAGAATTTCAGATGTCTGAAAATGTGTTTCAGATTTTTGAAAATCGAAATACTTTGAAATTTGGAAAGTATACGGTATAATAAATACCAAACAAAAATGGAGATCTGGGTCTAAAGTTGTCAAATATTCTAGAAAATTTGAGCTAGATGATCTATGTCGTTTGAAGACATGGACCTAATTTTGAAGGTAGGTAGTCCCAAACGGAATATCTTCTTTGTATGATTTTTTCTTCAAAAGTTGTTAACTACAAAATTGAAGCTCTATTGTTGTTTGGTATCTTCTGAAAATTTTAATTTGGTCTGAAAATTCGTAATTATTTTTCAGGCATTTAAATAGACTTGCTTTAAACGAAACACGCTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAATTAAAGAAGGGAAACTG</pcr_primer_p1>
		<pcr_primer_p2>TCAGACATCTGAAATTCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAAATTAAAGAAGGGAAACTGAGGAGTATTTTAAGCTATCGAGCTAAAAGATTGATAAAGGAAGAAGAGAGTTACAGAGCTTAGAAGTTGGAGTATTTTTTATTTACCGTATTTCTAAAAGCCTCCATGTTCCAGAAAAATTGTAGGGGTGAAGTAGATCAGAAAATACACATTACTTAGGTTTTCCAGTCATTTTCTCTTTGTTTTTTCCATGTCAAAGTTCACGAAAAAGAATTTCAGATGTCTGA</canonical_amplicon>
		<polymorphic_amplicon>AGAAAATTAAAGAAGGGAAACTGAGGAGTATTTTAAGCTATCGAGCTAAAAGATTGATAAAGGAAGAAGAGAGTTACAGAGCTTAGAAGTTRGAGTATTTTTTATTTACCGTATTTCTAAAAGCCTCCATGTTCCAGAAAAATTGTAGGGGTGAAGTAGATCAGAAAATACACATTACTTAGGTTTTCCAGTCATTTTCTCTTTGTTTTTTCCATGTCAAAGTTCACGAAAAAGAATTTCAGATGTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35600</snp_id>
        <super_contig>c009801860.Contig1</super_contig>
        <contig_pos>1011291</contig_pos>
        <strand>+</strand>
        <context>TTGTTTCAAA[A/C]WMAAAAATCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCAATTAGTTTTTGGAAAAGTGAAGAGAACAGAAAAGTGATTGTTTCAAA</left_flank>
        <right_flank>AAAAAAATCAGAATCATCAGAAAGCTCATAAAATTTCAAATCGTTCTGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGCGTGTGCTTGCTGCCTGTTGATGTGATAAAAATGCTATGTGCCTTCTTCTTCTCTTTCTCTCTCTCTCTCTTCTTTTTCGCCTCTTGATAAACAAATCAAGCCACCGGGAGGACGGAGAAAAAGAGACGTTTTTCGTCTCTAGCTTCTCTCACTCTCTCGTTCTCTGAAAAATGGAGAATCTATTTTTAGAATTGCTCTCCCCCTCCTCTCGGCCCGCCCGGGTGCCGCTTATCGATTTTAAGGCATATAATGCATACAAATGTGCAGGCAGCACATGCTCTCTTTTTCTTTTTTCGGGGCAGGGACCAAAAAGAGAGAGAGAGAGAGGAGGAAGAGGTCCTCCAAGTGCTCCTAAAAGAAGGGAATTGGAAAAGATGTGATTTTCATGGAGAAGAGTGAGGACCACTTGAAAAGAAGACATAGAAAAGATGGGGTTAATTGAATTTCAATTAGTTTTTGGAAAAGTGAAGAGAACAGAAAAGTGATTGTTTCAAAAAAAAAAATCAGAATCATCAGAAAGCTCATAAAATTTCAAATCGTTCTGTAAAAGAACTAAGTTTTTAGGACCACGGAGAGCTGAGATATAGCCCTTTGAAGTTTGCAGCGAAAGAGGGAGACACAGGCGCGCAGACAGTCTGCCTGTCGGCGTCTCCTCCTTCCTCACGCTTCCTCGCGAGCCTAAAACTTCTAACGATTGTAACTCAGCTTCTATAAGTGCTAGAAACTTGATTTTTGTACTACTCAAACTGAAATTTCGTGGGGTTTTTGTGAATACATGTTTGTTACAATTTTGATGACAAAACTATATTACAATAATGGGGAAATTGAGCTCAAACGGGGATTCTATAAGTTGAATCCACCTTTTAAAATCTATATTTTTCAGGTAATGCTAAAAGCAATGGAAGAAATCGACCCGCCAATCGCCCTCGACCAGCCAAGCACCGCTGCCAGCAGAGACTACGTGATGAGCGTCACCAACGATCCAGAAGACAATTA</canonical>
            <polymorphic>AGGCGTGTGCTTGCTGCCTGTTGATGTGATAAAAATGCTATGTGCCTTCTTCTTCTCTTTCTCTCTCTCTCTCTTCTTTTTCGCCTCTTGATAAACAAATCAAGCCACCGGGAGGACGGAGAAAAAGAGACGTTTTTCGTCTCTAGCTTCTCTCACTCTCTCGTTCTCTGAAAAATGGAGAATCTATTTTTAGAATTGCTCTCCCCCTCCTCTCGGCCCGCCCGGGTGCCGCTTATCGATTTTAAGGCATATAATGCATACAAATGTGCAGGCAGCACATGCTCTCTTTTTCTTTTTTCGGGGCAGGGACCAAAAAGAGAGAGAGAGAGAGGAGGAAGAGGTCCTCCAAGTGCTCCTAAAAGAAGGGAATTGGAAAAGATGTGATTTTCATGGAGAAGAGTGAGGACCACTTGAAAAGAAGACATAGAAAAGATGGGGTTAATTGAATTTCAATTAGTTTTTGGAAAAGTGAAGAGAACAGAAAAGTGATTGTTTCAAAMAAAAAAATCAGAATCATCAGAAAGCTCATAAAATTTCAAATCGTTCTGTAAAAGAACTAAGTTTTTAGGACCACGGAGAGCTGAGATATAGCCCTTTGAAGTTTGCAGCGAAAGAGGGAGACACAGGCGCGCAGACAGTCTGCCTGTCGGCGTCTCCTCCTTCCTCACGCTTCCTCGCGAGCCTAAAACTTCTAACGATTGTAACTCAGCTTCTATAAGTGCTAGAAACTTGATTTTTGTACTACTCAAACTGAAATTTCGTGGGGTTTTTGTGAATACATGTTTGTTACAATTTTGATGACAAAACTATATTACAATAATGGGGAAATTGAGCTCAAACGGGGATTCTATAAGTTGAATCCACCTTTTAAAATCTATATTTTTCAGGTAATGCTAAAAGCAATGGAAGAAATCGACCCGCCAATCGCCCTCGACCAGCCAAGCACCGCTGCCAGCAGAGACTACGTGATGAGCGTCACCAACGATCCAGAAGACAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACATAGAAAAGATGGGGTTAAT</pcr_primer_p1>
		<pcr_primer_p2>CCACGAAATTTCAGTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>344</pcr_amplicon_size>
		<canonical_amplicon>GACATAGAAAAGATGGGGTTAATTGAATTTCAATTAGTTTTTGGAAAAGTGAAGAGAACAGAAAAGTGATTGTTTCAAAAAAAAAAATCAGAATCATCAGAAAGCTCATAAAATTTCAAATCGTTCTGTAAAAGAACTAAGTTTTTAGGACCACGGAGAGCTGAGATATAGCCCTTTGAAGTTTGCAGCGAAAGAGGGAGACACAGGCGCGCAGACAGTCTGCCTGTCGGCGTCTCCTCCTTCCTCACGCTTCCTCGCGAGCCTAAAACTTCTAACGATTGTAACTCAGCTTCTATAAGTGCTAGAAACTTGATTTTTGTACTACTCAAACTGAAATTTCGTGG</canonical_amplicon>
		<polymorphic_amplicon>GACATAGAAAAGATGGGGTTAATTGAATTTCAATTAGTTTTTGGAAAAGTGAAGAGAACAGAAAAGTGATTGTTTCAAAMAAAAAAATCAGAATCATCAGAAAGCTCATAAAATTTCAAATCGTTCTGTAAAAGAACTAAGTTTTTAGGACCACGGAGAGCTGAGATATAGCCCTTTGAAGTTTGCAGCGAAAGAGGGAGACACAGGCGCGCAGACAGTCTGCCTGTCGGCGTCTCCTCCTTCCTCACGCTTCCTCGCGAGCCTAAAACTTCTAACGATTGTAACTCAGCTTCTATAAGTGCTAGAAACTTGATTTTTGTACTACTCAAACTGAAATTTCGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35601</snp_id>
        <super_contig>c009802110.Contig1</super_contig>
        <contig_pos>9974</contig_pos>
        <strand></strand>
        <context>cgttgtatct[T/C]gagttctaga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAGAGTGTCTCGTCGTCTGCGTCTCTTCTAAACTTTAAAACGTTGTATCT</left_flank>
        <right_flank>GAGTTCTAGAAGGGCTAGAAGAATGATTTTTGGACGGATATGTGTCAAAT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTTAAAGTTTCCAGAAGTTTCCTCATCAACCATGCGATGCATTCAGTGTGGTGATGGATCGTTGAGAAACGCGAACGAAGAATGCAAGAGACAAGTCCAGGTGGAGTGTGATTCTGAGAGATCTCTGTGTTTTACAAGGCAAATTGAACTTGGAAATGGTAAACTTTTTTGTTGGGATTCCTTCTAAAAATCTATAATTTCAGGAATGTACGGCATGGAAAAAATGTGTGTGCTCCCTGAGCAGCTGGTCAATGAGTTTGGAGAATTGGCGAGAAACGAGGGGTGCGGAAGTTCGAATGCCGGAAGAGTACAGTACTGCGCTTGCTCATCTCCAATTTGCAATCAATTGCCGTTGGCTCAGCAGGTAAGACATTTGTGAAAAATTCAATTTTCTAGCTTTTCTGGGAGCCGAGATATAGCGCTTTGAAGTTTTGGAGGCTAGAGACGCAGAGTGTCTCGTCGTCTGCGTCTCTTCTAAACTTTAAAACGTTGTATCTTGAGTTCTAGAAGGGCTAGAAGAATGATTTTTGGACGGATATGTGTCAAATTGTTTGCCAAACCAAGCACTTTTAAAATTGACACGATTTTGATAAAAAGCGTAAAATTATTTTTTCCAATTTTTGAAAAAATGTGAAAACCAGACATTTTTTTCAACGATTTCTTTGATTCGTGTCTAGTTTTCCTCTTTCTAGCTATTCTAGGAGCCGAGATATAGCGCTTTGAAGTACCGGGGAGACGCAGACAACGAGACAATCTAACTGTCTGCGTCTCTTCTAAACGCTATATCTCGAGTTCTAGAAGAGCTAGAAAGATGAAAATTAGACGGACAGTTTGCGAATTTTCAGTACTGTTTCACTGCTATAAAAACACTTGTTTTGGGAAAGTTTGATTTTTGAAATTTTTGGGATTACTCATTTTTCATAAAGAAGCAAATGCAAAGCCAAATATAGGAGGCCCAGAAAATTATTTTTTCGACAGATCACGTAAAGTTTTTAGCT</canonical>
            <polymorphic>ATGTTAAAGTTTCCAGAAGTTTCCTCATCAACCATGCGATGCATTCAGTGTGGTGATGGATCGTTGAGAAACGCGAACGAAGAATGCAAGAGACAAGTCCAGGTGGAGTGTGATTCTGAGAGATCTCTGTGTTTTACAAGGCAAATTGAACTTGGAAATGGTAAACTTTTTTGTTGGGATTCCTTCTAAAAATCTATAATTTCAGGAATGTACGGCATGGAAAAAATGTGTGTGCTCCCTGAGCAGCTGGTCAATGAGTTTGGAGAATTGGCGAGAAACGAGGGGTGCGGAAGTTCGAATGCCGGAAGAGTACAGTACTGCGCTTGCTCATCTCCAATTTGCAATCAATTGCCGTTGGCTCAGCAGGTAAGACATTTGTGAAAAATTCAATTTTCTAGCTTTTCTGGGAGCCGAGATATAGCGCTTTGAAGTTTTGGAGGCTAGAGACGCAGAGTGTCTCGTCGTCTGCGTCTCTTCTAAACTTTAAAACGTTGTATCTYGAGTTCTAGAAGGGCTAGAAGAATGATTTTTGGACGGATATGTGTCAAATTGTTTGCCAAACCAAGCACTTTTAAAATTGACACGATTTTGATAAAAAGCGTAAAATTATTTTTTCCAATTTTTGAAAAAATGTGAAAACCAGACATTTTTTTCAACGATTTCTTTGATTCGTGTCTAGTTTTCCTCTTTCTAGCTATTCTAGGAGCCGAGATATAGCGCTTTGAAGTACCGGGGAGACGCAGACAACGAGACAATCTAACTGTCTGCGTCTCTTCTAAACGCTATATCTCGAGTTCTAGAAGAGCTAGAAAGATGAAAATTAGACGGACAGTTTGCGAATTTTCAGTACTGTTTCACTGCTATAAAAACACTTGTTTTGGGAAAGTTTGATTTTTGAAATTTTTGGGATTACTCATTTTTCATAAAGAAGCAAATGCAAAGCCAAATATAGGAGGCCCAGAAAATTATTTTTTCGACAGATCACGTAAAGTTTTTAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>498 291 211</canonical_bands>
                <polymorphic_bands>789 211</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTCCAATTTGCAATCAAT</pcr_primer_p1>
		<pcr_primer_p2>AATTTTAAAAGTGCTTGGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTCCAATTTGCAATCAATTGCCGTTGGCTCAGCAGGTAAGACATTTGTGAAAAATTCAATTTTCTAGCTTTTCTGGGAGCCGAGATATAGCGCTTTGAAGTTTTGGAGGCTAGAGACGCAGAGTGTCTCGTCGTCTGCGTCTCTTCTAAACTTTAAAACGTTGTATCTTGAGTTCTAGAAGGGCTAGAAGAATGATTTTTGGACGGATATGTGTCAAATTGTTTGCCAAACCAAGCACTTTTAAAATT</canonical_amplicon>
		<polymorphic_amplicon>ATCTCCAATTTGCAATCAATTGCCGTTGGCTCAGCAGGTAAGACATTTGTGAAAAATTCAATTTTCTAGCTTTTCTGGGAGCCGAGATATAGCGCTTTGAAGTTTTGGAGGCTAGAGACGCAGAGTGTCTCGTCGTCTGCGTCTCTTCTAAACTTTAAAACGTTGTATCTYGAGTTCTAGAAGGGCTAGAAGAATGATTTTTGGACGGATATGTGTCAAATTGTTTGCCAAACCAAGCACTTTTAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35602</snp_id>
        <super_contig>c009802110.Contig1</super_contig>
        <contig_pos>10302</contig_pos>
        <strand></strand>
        <context>aaattagacg[G/A]acagtttgcg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAACGCTATATCTCGAGTTCTAGAAGAGCTAGAAAGATGAAAATTAGACG</left_flank>
        <right_flank>ACAGTTTGCGAATTTTCAGTACTGTTTCACTGCTATAAAAACACTTGTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCTCCAATTTGCAATCAATTGCCGTTGGCTCAGCAGGTAAGACATTTGTGAAAAATTCAATTTTCTAGCTTTTCTGGGAGCCGAGATATAGCGCTTTGAAGTTTTGGAGGCTAGAGACGCAGAGTGTCTCGTCGTCTGCGTCTCTTCTAAACTTTAAAACGTTGTATCTTGAGTTCTAGAAGGGCTAGAAGAATGATTTTTGGACGGATATGTGTCAAATTGTTTGCCAAACCAAGCACTTTTAAAATTGACACGATTTTGATAAAAAGCGTAAAATTATTTTTTCCAATTTTTGAAAAAATGTGAAAACCAGACATTTTTTTCAACGATTTCTTTGATTCGTGTCTAGTTTTCCTCTTTCTAGCTATTCTAGGAGCCGAGATATAGCGCTTTGAAGTACCGGGGAGACGCAGACAACGAGACAATCTAACTGTCTGCGTCTCTTCTAAACGCTATATCTCGAGTTCTAGAAGAGCTAGAAAGATGAAAATTAGACGGACAGTTTGCGAATTTTCAGTACTGTTTCACTGCTATAAAAACACTTGTTTTGGGAAAGTTTGATTTTTGAAATTTTTGGGATTACTCATTTTTCATAAAGAAGCAAATGCAAAGCCAAATATAGGAGGCCCAGAAAATTATTTTTTCGACAGATCACGTAAAGTTTTTAGCTGTTTGAGACAAAATTTTGAGGATGAAAAAGTTCAGTTTTTTTTCGGAAAATGTAATTTTCCAGAAATTTTCATGGAAAATCTAATAGCATCAAGAATTTGCAATATTTCTGTCAAAACTTCATCTTTCTAGCTCTTCTAGGAGCCGAGATATAGTGCTTTGAAATAGAGAAGAGATGCAGACGACGAGACGCTCTAACTGTCTGCGTCTCTGCAAAAATTCTAACCTCTGTATCTCGGGTTCTAGAAGGGCTAGAAACTTTGTTTTTTCCCTGTTCTACTCTTCAGAATCTCTATTTTCCAGATAATTCAAAAAATTCAAATTCAAAT</canonical>
            <polymorphic>CATCTCCAATTTGCAATCAATTGCCGTTGGCTCAGCAGGTAAGACATTTGTGAAAAATTCAATTTTCTAGCTTTTCTGGGAGCCGAGATATAGCGCTTTGAAGTTTTGGAGGCTAGAGACGCAGAGTGTCTCGTCGTCTGCGTCTCTTCTAAACTTTAAAACGTTGTATCTTGAGTTCTAGAAGGGCTAGAAGAATGATTTTTGGACGGATATGTGTCAAATTGTTTGCCAAACCAAGCACTTTTAAAATTGACACGATTTTGATAAAAAGCGTAAAATTATTTTTTCCAATTTTTGAAAAAATGTGAAAACCAGACATTTTTTTCAACGATTTCTTTGATTCGTGTCTAGTTTTCCTCTTTCTAGCTATTCTAGGAGCCGAGATATAGCGCTTTGAAGTACCGGGGAGACGCAGACAACGAGACAATCTAACTGTCTGCGTCTCTTCTAAACGCTATATCTCGAGTTCTAGAAGAGCTAGAAAGATGAAAATTAGACGRACAGTTTGCGAATTTTCAGTACTGTTTCACTGCTATAAAAACACTTGTTTTGGGAAAGTTTGATTTTTGAAATTTTTGGGATTACTCATTTTTCATAAAGAAGCAAATGCAAAGCCAAATATAGGAGGCCCAGAAAATTATTTTTTCGACAGATCACGTAAAGTTTTTAGCTGTTTGAGACAAAATTTTGAGGATGAAAAAGTTCAGTTTTTTTTCGGAAAATGTAATTTTCCAGAAATTTTCATGGAAAATCTAATAGCATCAAGAATTTGCAATATTTCTGTCAAAACTTCATCTTTCTAGCTCTTCTAGGAGCCGAGATATAGTGCTTTGAAATAGAGAAGAGATGCAGACGACGAGACGCTCTAACTGTCTGCGTCTCTGCAAAAATTCTAACCTCTGTATCTCGGGTTCTAGAAGGGCTAGAAACTTTGTTTTTTCCCTGTTCTACTCTTCAGAATCTCTATTTTCCAGATAATTCAAAAAATTCAAATTCAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATGTGAAAACCAGACATTT</pcr_primer_p1>
		<pcr_primer_p2>GTAATCCCAAAAATTTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>286</pcr_amplicon_size>
		<canonical_amplicon>AAAATGTGAAAACCAGACATTTTTTTCAACGATTTCTTTGATTCGTGTCTAGTTTTCCTCTTTCTAGCTATTCTAGGAGCCGAGATATAGCGCTTTGAAGTACCGGGGAGACGCAGACAACGAGACAATCTAACTGTCTGCGTCTCTTCTAAACGCTATATCTCGAGTTCTAGAAGAGCTAGAAAGATGAAAATTAGACGGACAGTTTGCGAATTTTCAGTACTGTTTCACTGCTATAAAAACACTTGTTTTGGGAAAGTTTGATTTTTGAAATTTTTGGGATTAC</canonical_amplicon>
		<polymorphic_amplicon>AAAATGTGAAAACCAGACATTTTTTTCAACGATTTCTTTGATTCGTGTCTAGTTTTCCTCTTTCTAGCTATTCTAGGAGCCGAGATATAGCGCTTTGAAGTACCGGGGAGACGCAGACAACGAGACAATCTAACTGTCTGCGTCTCTTCTAAACGCTATATCTCGAGTTCTAGAAGAGCTAGAAAGATGAAAATTAGACGRACAGTTTGCGAATTTTCAGTACTGTTTCACTGCTATAAAAACACTTGTTTTGGGAAAGTTTGATTTTTGAAATTTTTGGGATTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35603</snp_id>
        <super_contig>c009802110.Contig1</super_contig>
        <contig_pos>27493</contig_pos>
        <strand></strand>
        <context>AATTTGAGTT[T/A]CCTSAAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATTCTGAAATATTCAACATGTTTTTTTTTCAAATCTCGAAATTTGAGTT</left_flank>
        <right_flank>CCTCAAAAAAACCAACGTTCATGTTTTCAAGGAAGTGACCAGGTTTTCTG</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTAATAGGCTTAGGAATGCATTTTTTTTTGACAATTATCTAAGCCTGAGAAACAGCATAATCACGGAGTGATTACTGTATTGCCCAAATTTTCCTCATATGTAAATTGGGTTCATCGGCAAGATGCGAGAGAATAGGAGCTAAAATTGTTAGGAGTAGTCATGTCATCCTATAAGACCTTAAAACTCAAACTACTCGCACAGTTCAAATACTAGTACATTATTCCAACATCTGCGCGTTTTTCGTATTTTGGACCTCTATTTTTTCTTGGGACTTCTAAACTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTATTTTGGGACCTCTAATTTTTTTTCGGACCTCTAAATTTTTTTGGAACCTCTAAACTAGAAAAGAGCCGAATTTTTTTCAATGAAAAATCCAGAAATTCAGAAAATCATCAAACTCGGTCCCAGACAAATTCTGAAATATTCAACATGTTTTTTTTTCAAATCTCGAAATTTGAGTTTCCTCAAAAAAACCAACGTTCATGTTTTCAAGGAAGTGACCAGGTTTTCTGACTGAGTGGGAGAGGAAATAATTTTCAGATTTTTTTCAGAAATTTCTGGAAAAAACATGTTCCCATTTTTTCGTGGACACAGGAAATTGGGGGGGGGGGTGTTTGGGAAGGAGGTAATAGAAGAATGTTTGTGTTTTTCTGAGCAATGGTAGCAATTATTTTTGTTTGAGGATTCATTATTCAGAATTTCTAGATTTTCAATAATTTTCCTTTTTCTGTTTGTCCAAATGTCCGCAAAAAAAAAAATATAAAATGTACCCATTTTCCACTCAGAACGGGCGGATTTTTGATGTTTCTCCCCAAGTATTTCATATCCCTTTAATGCAAATTTTATTGGAGAATTTTGAGAGAGAGAGAGAGAGGAAGAGAAGAGAGACGCAGAGAAAAAAATTGATAAAAAATTTCTGGAAGTTTTATACTTCCTTTGGGCTATTTTCCTTTTTTTTTTGA</canonical>
            <polymorphic>TTCTAATAGGCTTAGGAATGCATTTTTTTTTGACAATTATCTAAGCCTGAGAAACAGCATAATCACGGAGTGATTACTGTATTGCCCAAATTTTCCTCATATGTAAATTGGGTTCATCGGCAAGATGCGAGAGAATAGGAGCTAAAATTGTTAGGAGTAGTCATGTCATCCTATAAGACCTTAAAACTCAAACTACTCGCACAGTTCAAATACTAGTACATTATTCCAACATCTGCGCGTTTTTCGTATTTTGGACCTCTATTTTTTCTTGGGACTTCTAAACTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTATTTTGGGACCTCTAATTTTTTTTCGGACCTCTAAATTTTTTTGGAACCTCTAAACTAGAAAAGAGCCGAATTTTTTTCAATGAAAAATCCAGAAATTCAGAAAATCATCAAACTCGGTCCCAGACAAATTCTGAAATATTCAACATGTTTTTTTTTCAAATCTCGAAATTTGAGTTWCCTCAAAAAAACCAACGTTCATGTTTTCAAGGAAGTGACCAGGTTTTCTGACTGAGTGGGAGAGGAAATAATTTTCAGATTTTTTTCAGAAATTTCTGGAAAAAACATGTTCCCATTTTTTCGTGGACACAGGAAATTGGGGGGGGGGGTGTTTGGGAAGGAGGTAATAGAAGAATGTTTGTGTTTTTCTGAGCAATGGTAGCAATTATTTTTGTTTGAGGATTCATTATTCAGAATTTCTAGATTTTCAATAATTTTCCTTTTTCTGTTTGTCCAAATGTCCGCAAAAAAAAAAATATAAAATGTACCCATTTTCCACTCAGAACGGGCGGATTTTTGATGTTTCTCCCCAAGTATTTCATATCCCTTTAATGCAAATTTTATTGGAGAATTTTGAGAGAGAGAGAGAGAGGAAGAGAAGAGAGACGCAGAGAAAAAAATTGATAAAAAATTTCTGGAAGTTTTATACTTCCTTTGGGCTATTTTCCTTTTTTTTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGACAAATTCTGAAATATTCAAC</pcr_primer_p1>
		<pcr_primer_p2>CTCAGAAAAACACAAACATTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGACAAATTCTGAAATATTCAACATGTTTTTTTTTCAAATCTCGAAATTTGAGTTTCCTCAAAAAAACCAACGTTCATGTTTTCAAGGAAGTGACCAGGTTTTCTGACTGAGTGGGAGAGGAAATAATTTTCAGATTTTTTTCAGAAATTTCTGGAAAAAACATGTTCCCATTTTTTCGTGGACACAGGAAATTGGGGGGGGGGGTGTTTGGGAAGGAGGTAATAGAAGAATGTTTGTGTTTTTCTGAG</canonical_amplicon>
		<polymorphic_amplicon>CAGACAAATTCTGAAATATTCAACATGTTTTTTTTTCAAATCTCGAAATTTGAGTTWCCTCAAAAAAACCAACGTTCATGTTTTCAAGGAAGTGACCAGGTTTTCTGACTGAGTGGGAGAGGAAATAATTTTCAGATTTTTTTCAGAAATTTCTGGAAAAAACATGTTCCCATTTTTTCGTGGACACAGGAAATTGGGGGGGGGGGTGTTTGGGAAGGAGGTAATAGAAGAATGTTTGTGTTTTTCTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35604</snp_id>
        <super_contig>c009802110.Contig1</super_contig>
        <contig_pos>27510</contig_pos>
        <strand></strand>
        <context>AAAAACCAAC[G/T]TTCATGTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATGTTTTTTTTTCAAATCTCGAAATTTGAGTTTCCTCAAAAAAACCAAC</left_flank>
        <right_flank>TTCATGTTTTCAAGGAAGTGACCAGGTTTTCTGACTGAGTGGGAGAGGAA</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGCATTTTTTTTTGACAATTATCTAAGCCTGAGAAACAGCATAATCACGGAGTGATTACTGTATTGCCCAAATTTTCCTCATATGTAAATTGGGTTCATCGGCAAGATGCGAGAGAATAGGAGCTAAAATTGTTAGGAGTAGTCATGTCATCCTATAAGACCTTAAAACTCAAACTACTCGCACAGTTCAAATACTAGTACATTATTCCAACATCTGCGCGTTTTTCGTATTTTGGACCTCTATTTTTTCTTGGGACTTCTAAACTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTATTTTGGGACCTCTAATTTTTTTTCGGACCTCTAAATTTTTTTGGAACCTCTAAACTAGAAAAGAGCCGAATTTTTTTCAATGAAAAATCCAGAAATTCAGAAAATCATCAAACTCGGTCCCAGACAAATTCTGAAATATTCAACATGTTTTTTTTTCAAATCTCGAAATTTGAGTTTCCTCAAAAAAACCAACGTTCATGTTTTCAAGGAAGTGACCAGGTTTTCTGACTGAGTGGGAGAGGAAATAATTTTCAGATTTTTTTCAGAAATTTCTGGAAAAAACATGTTCCCATTTTTTCGTGGACACAGGAAATTGGGGGGGGGGGTGTTTGGGAAGGAGGTAATAGAAGAATGTTTGTGTTTTTCTGAGCAATGGTAGCAATTATTTTTGTTTGAGGATTCATTATTCAGAATTTCTAGATTTTCAATAATTTTCCTTTTTCTGTTTGTCCAAATGTCCGCAAAAAAAAAAATATAAAATGTACCCATTTTCCACTCAGAACGGGCGGATTTTTGATGTTTCTCCCCAAGTATTTCATATCCCTTTAATGCAAATTTTATTGGAGAATTTTGAGAGAGAGAGAGAGAGGAAGAGAAGAGAGACGCAGAGAAAAAAATTGATAAAAAATTTCTGGAAGTTTTATACTTCCTTTGGGCTATTTTCCTTTTTTTTTTGAGTCAATTTTCACTATTT</canonical>
            <polymorphic>ATGCATTTTTTTTTGACAATTATCTAAGCCTGAGAAACAGCATAATCACGGAGTGATTACTGTATTGCCCAAATTTTCCTCATATGTAAATTGGGTTCATCGGCAAGATGCGAGAGAATAGGAGCTAAAATTGTTAGGAGTAGTCATGTCATCCTATAAGACCTTAAAACTCAAACTACTCGCACAGTTCAAATACTAGTACATTATTCCAACATCTGCGCGTTTTTCGTATTTTGGACCTCTATTTTTTCTTGGGACTTCTAAACTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTATTTTGGGACCTCTAATTTTTTTTCGGACCTCTAAATTTTTTTGGAACCTCTAAACTAGAAAAGAGCCGAATTTTTTTCAATGAAAAATCCAGAAATTCAGAAAATCATCAAACTCGGTCCCAGACAAATTCTGAAATATTCAACATGTTTTTTTTTCAAATCTCGAAATTTGAGTTTCCTCAAAAAAACCAACKTTCATGTTTTCAAGGAAGTGACCAGGTTTTCTGACTGAGTGGGAGAGGAAATAATTTTCAGATTTTTTTCAGAAATTTCTGGAAAAAACATGTTCCCATTTTTTCGTGGACACAGGAAATTGGGGGGGGGGGTGTTTGGGAAGGAGGTAATAGAAGAATGTTTGTGTTTTTCTGAGCAATGGTAGCAATTATTTTTGTTTGAGGATTCATTATTCAGAATTTCTAGATTTTCAATAATTTTCCTTTTTCTGTTTGTCCAAATGTCCGCAAAAAAAAAAATATAAAATGTACCCATTTTCCACTCAGAACGGGCGGATTTTTGATGTTTCTCCCCAAGTATTTCATATCCCTTTAATGCAAATTTTATTGGAGAATTTTGAGAGAGAGAGAGAGAGGAAGAGAAGAGAGACGCAGAGAAAAAAATTGATAAAAAATTTCTGGAAGTTTTATACTTCCTTTGGGCTATTTTCCTTTTTTTTTTGAGTCAATTTTCACTATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGACAAATTCTGAAATATTCAAC</pcr_primer_p1>
		<pcr_primer_p2>CTCAGAAAAACACAAACATTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGACAAATTCTGAAATATTCAACATGTTTTTTTTTCAAATCTCGAAATTTGAGTTTCCTCAAAAAAACCAACGTTCATGTTTTCAAGGAAGTGACCAGGTTTTCTGACTGAGTGGGAGAGGAAATAATTTTCAGATTTTTTTCAGAAATTTCTGGAAAAAACATGTTCCCATTTTTTCGTGGACACAGGAAATTGGGGGGGGGGGTGTTTGGGAAGGAGGTAATAGAAGAATGTTTGTGTTTTTCTGAG</canonical_amplicon>
		<polymorphic_amplicon>CAGACAAATTCTGAAATATTCAACATGTTTTTTTTTCAAATCTCGAAATTTGAGTTTCCTCAAAAAAACCAACKTTCATGTTTTCAAGGAAGTGACCAGGTTTTCTGACTGAGTGGGAGAGGAAATAATTTTCAGATTTTTTTCAGAAATTTCTGGAAAAAACATGTTCCCATTTTTTCGTGGACACAGGAAATTGGGGGGGGGGGTGTTTGGGAAGGAGGTAATAGAAGAATGTTTGTGTTTTTCTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35605</snp_id>
        <super_contig>c009802110.Contig1</super_contig>
        <contig_pos>27589</contig_pos>
        <strand></strand>
        <context>TCAGAAATTT[C/T]TGGAAAAAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTGACTGAGTGGGAGAGGAAATAATTTTCAGATTTTTTTCAGAAATTT</left_flank>
        <right_flank>TGGAAAAAACATGTTCCCATTTTTTCGTGGACACAGGAAATTGGGGGGGG</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATATGTAAATTGGGTTCATCGGCAAGATGCGAGAGAATAGGAGCTAAAATTGTTAGGAGTAGTCATGTCATCCTATAAGACCTTAAAACTCAAACTACTCGCACAGTTCAAATACTAGTACATTATTCCAACATCTGCGCGTTTTTCGTATTTTGGACCTCTATTTTTTCTTGGGACTTCTAAACTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTATTTTGGGACCTCTAATTTTTTTTCGGACCTCTAAATTTTTTTGGAACCTCTAAACTAGAAAAGAGCCGAATTTTTTTCAATGAAAAATCCAGAAATTCAGAAAATCATCAAACTCGGTCCCAGACAAATTCTGAAATATTCAACATGTTTTTTTTTCAAATCTCGAAATTTGAGTTTCCTCAAAAAAACCAACGTTCATGTTTTCAAGGAAGTGACCAGGTTTTCTGACTGAGTGGGAGAGGAAATAATTTTCAGATTTTTTTCAGAAATTTCTGGAAAAAACATGTTCCCATTTTTTCGTGGACACAGGAAATTGGGGGGGGGGGTGTTTGGGAAGGAGGTAATAGAAGAATGTTTGTGTTTTTCTGAGCAATGGTAGCAATTATTTTTGTTTGAGGATTCATTATTCAGAATTTCTAGATTTTCAATAATTTTCCTTTTTCTGTTTGTCCAAATGTCCGCAAAAAAAAAAATATAAAATGTACCCATTTTCCACTCAGAACGGGCGGATTTTTGATGTTTCTCCCCAAGTATTTCATATCCCTTTAATGCAAATTTTATTGGAGAATTTTGAGAGAGAGAGAGAGAGGAAGAGAAGAGAGACGCAGAGAAAAAAATTGATAAAAAATTTCTGGAAGTTTTATACTTCCTTTGGGCTATTTTCCTTTTTTTTTTGAGTCAATTTTCACTATTTCTTAACCATTTTTTTTATGATTTTTCCCTAATCTTTGCTCCAACCCTCTTTAAAATTCCAGTTTCATTTTTTTTAGAAT</canonical>
            <polymorphic>TCATATGTAAATTGGGTTCATCGGCAAGATGCGAGAGAATAGGAGCTAAAATTGTTAGGAGTAGTCATGTCATCCTATAAGACCTTAAAACTCAAACTACTCGCACAGTTCAAATACTAGTACATTATTCCAACATCTGCGCGTTTTTCGTATTTTGGACCTCTATTTTTTCTTGGGACTTCTAAACTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTATTTTGGGACCTCTAATTTTTTTTCGGACCTCTAAATTTTTTTGGAACCTCTAAACTAGAAAAGAGCCGAATTTTTTTCAATGAAAAATCCAGAAATTCAGAAAATCATCAAACTCGGTCCCAGACAAATTCTGAAATATTCAACATGTTTTTTTTTCAAATCTCGAAATTTGAGTTTCCTCAAAAAAACCAACGTTCATGTTTTCAAGGAAGTGACCAGGTTTTCTGACTGAGTGGGAGAGGAAATAATTTTCAGATTTTTTTCAGAAATTTYTGGAAAAAACATGTTCCCATTTTTTCGTGGACACAGGAAATTGGGGGGGGGGGTGTTTGGGAAGGAGGTAATAGAAGAATGTTTGTGTTTTTCTGAGCAATGGTAGCAATTATTTTTGTTTGAGGATTCATTATTCAGAATTTCTAGATTTTCAATAATTTTCCTTTTTCTGTTTGTCCAAATGTCCGCAAAAAAAAAAATATAAAATGTACCCATTTTCCACTCAGAACGGGCGGATTTTTGATGTTTCTCCCCAAGTATTTCATATCCCTTTAATGCAAATTTTATTGGAGAATTTTGAGAGAGAGAGAGAGAGGAAGAGAAGAGAGACGCAGAGAAAAAAATTGATAAAAAATTTCTGGAAGTTTTATACTTCCTTTGGGCTATTTTCCTTTTTTTTTTGAGTCAATTTTCACTATTTCTTAACCATTTTTTTTATGATTTTTCCCTAATCTTTGCTCCAACCCTCTTTAAAATTCCAGTTTCATTTTTTTTAGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>316 215 144 141 111 73</canonical_bands>
                <polymorphic_bands>316 255 215 141 73</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGACAAATTCTGAAATATTCAAC</pcr_primer_p1>
		<pcr_primer_p2>CTCAGAAAAACACAAACATTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGACAAATTCTGAAATATTCAACATGTTTTTTTTTCAAATCTCGAAATTTGAGTTTCCTCAAAAAAACCAACGTTCATGTTTTCAAGGAAGTGACCAGGTTTTCTGACTGAGTGGGAGAGGAAATAATTTTCAGATTTTTTTCAGAAATTTCTGGAAAAAACATGTTCCCATTTTTTCGTGGACACAGGAAATTGGGGGGGGGGGTGTTTGGGAAGGAGGTAATAGAAGAATGTTTGTGTTTTTCTGAG</canonical_amplicon>
		<polymorphic_amplicon>CAGACAAATTCTGAAATATTCAACATGTTTTTTTTTCAAATCTCGAAATTTGAGTTTCCTCAAAAAAACCAACGTTCATGTTTTCAAGGAAGTGACCAGGTTTTCTGACTGAGTGGGAGAGGAAATAATTTTCAGATTTTTTTCAGAAATTTYTGGAAAAAACATGTTCCCATTTTTTCGTGGACACAGGAAATTGGGGGGGGGGGTGTTTGGGAAGGAGGTAATAGAAGAATGTTTGTGTTTTTCTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35606</snp_id>
        <super_contig>c009802110.Contig1</super_contig>
        <contig_pos>43659</contig_pos>
        <strand>+</strand>
        <context>CTTCAAATTT[A/G]TACAAGATGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATCCATTGGAGGCAACGTGGTTAGATTCTTGAGAGACAACTTCAAATTT</left_flank>
        <right_flank>TACAAGATGCAAAGGAGATGGAGGGGCTTTGTAGGAAGATTCAAGACACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATAAATCTGGAAATCTCATGTTCGGAACTGTCGACACCTGGCTCATCTGGAAATTAACCGGCGCTTACGTCACCGACGTTTCGAACGCCTCCAGGACCCTTCTTCTAGATCTACACAAGAGAAAGTGGTCCACCGAACTTTGCGAGTTCTTTGATCTACCGATGGAGATTCTCCCCGAGATCAAGTCCTCTGCCGAGGTTTATGGATACCTTAAAAATGGTCCTTTAGAAGGAGTACCCCTCTCCGGATGTCTAGGAGATCAGCAAAGTGCAATGGTTGGACATCAGTGTCTAAACGCTGGCCAATCCAAGAACACCTATGGTACAGGCACTTTTATGTTGTGCAATATTGGAACAAGACCGATTATTTCGAAGAACGGATTGCTGACTACTGTAGGCTTCCAGTTTGGAGCCGATTCTCCTGTGGTATATGCGTTAGAAGGTTCTGGATCCATTGGAGGCAACGTGGTTAGATTCTTGAGAGACAACTTCAAATTTATACAAGATGCAAAGGAGATGGAGGGGCTTTGTAGGAAGATTCAAGACACTTCTGGTGTCTACTTCGTCCCATCCTTCACTGGACTCTATACCCCGTACTGGGACTCAACGGCAAGAGGGACTATCCTTGGCCTTACTCAGGTCTCTCAAAGAGAGCACATCTGTTTGGCAGCTCTTCGCGCTGTGGCATTCCAAAGTGCTGAAATGGTGGCTGCTGTTGAGCAGGATCTGGATAATGGGACAAAAGTGACGACGCTTAAAGTGGATGGTGGAATGATTGCCAACAAATTGTTCAATGAGATTCAGGCGGACATTATGGGTGTGGATATTGTGACACCGAAGATTACGGAGATTTCGGGATGGGGAGCGGCGGTGGCTGGTGGTATTGGCGCACAGCAGATTAGTTTGGACGAGTTCTTAGAGCAGAGTAGTGAGGTAAGCTGGAGAAAAAAATGTTACACTTTTTAATTTTTGTAGCACCTCGCTAGATAGATTTTGAAC</canonical>
            <polymorphic>CTATAAATCTGGAAATCTCATGTTCGGAACTGTCGACACCTGGCTCATCTGGAAATTAACCGGCGCTTACGTCACCGACGTTTCGAACGCCTCCAGGACCCTTCTTCTAGATCTACACAAGAGAAAGTGGTCCACCGAACTTTGCGAGTTCTTTGATCTACCGATGGAGATTCTCCCCGAGATCAAGTCCTCTGCCGAGGTTTATGGATACCTTAAAAATGGTCCTTTAGAAGGAGTACCCCTCTCCGGATGTCTAGGAGATCAGCAAAGTGCAATGGTTGGACATCAGTGTCTAAACGCTGGCCAATCCAAGAACACCTATGGTACAGGCACTTTTATGTTGTGCAATATTGGAACAAGACCGATTATTTCGAAGAACGGATTGCTGACTACTGTAGGCTTCCAGTTTGGAGCCGATTCTCCTGTGGTATATGCGTTAGAAGGTTCTGGATCCATTGGAGGCAACGTGGTTAGATTCTTGAGAGACAACTTCAAATTTRTACAAGATGCAAAGGAGATGGAGGGGCTTTGTAGGAAGATTCAAGACACTTCTGGTGTCTACTTCGTCCCATCCTTCACTGGACTCTATACCCCGTACTGGGACTCAACGGCAAGAGGGACTATCCTTGGCCTTACTCAGGTCTCTCAAAGAGAGCACATCTGTTTGGCAGCTCTTCGCGCTGTGGCATTCCAAAGTGCTGAAATGGTGGCTGCTGTTGAGCAGGATCTGGATAATGGGACAAAAGTGACGACGCTTAAAGTGGATGGTGGAATGATTGCCAACAAATTGTTCAATGAGATTCAGGCGGACATTATGGGTGTGGATATTGTGACACCGAAGATTACGGAGATTTCGGGATGGGGAGCGGCGGTGGCTGGTGGTATTGGCGCACAGCAGATTAGTTTGGACGAGTTCTTAGAGCAGAGTAGTGAGGTAAGCTGGAGAAAAAAATGTTACACTTTTTAATTTTTGTAGCACCTCGCTAGATAGATTTTGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTATGGTACAGGCACTTTTAT</pcr_primer_p1>
		<pcr_primer_p2>AAGTAGACACCAGAAGTGTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACCTATGGTACAGGCACTTTTATGTTGTGCAATATTGGAACAAGACCGATTATTTCGAAGAACGGATTGCTGACTACTGTAGGCTTCCAGTTTGGAGCCGATTCTCCTGTGGTATATGCGTTAGAAGGTTCTGGATCCATTGGAGGCAACGTGGTTAGATTCTTGAGAGACAACTTCAAATTTATACAAGATGCAAAGGAGATGGAGGGGCTTTGTAGGAAGATTCAAGACACTTCTGGTGTCTACTT</canonical_amplicon>
		<polymorphic_amplicon>ACCTATGGTACAGGCACTTTTATGTTGTGCAATATTGGAACAAGACCGATTATTTCGAAGAACGGATTGCTGACTACTGTAGGCTTCCAGTTTGGAGCCGATTCTCCTGTGGTATATGCGTTAGAAGGTTCTGGATCCATTGGAGGCAACGTGGTTAGATTCTTGAGAGACAACTTCAAATTTRTACAAGATGCAAAGGAGATGGAGGGGCTTTGTAGGAAGATTCAAGACACTTCTGGTGTCTACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35607</snp_id>
        <super_contig>c009802110.Contig1</super_contig>
        <contig_pos>103884</contig_pos>
        <strand>+</strand>
        <context>TTTCATCGGA[A/G]AAAAACTGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCGAAATTTGACCAAAAAATCTTCATTTTCCATCAATTTTCATCGGA</left_flank>
        <right_flank>AAAAACTGTTAAAAATTAAAAACTCACTGAAAGTCCAAAAATCCCTGATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCACCGAGTGTAGCGGAGCTAGCTCATAGCTCGCTGAACTCGGATTTGAATTCGAGTTTTGAAATTGGTGGGACGGTGGATTTTGAGAATTCGTCGTCCCATTCTGAGCACCGCCGTAAGCTCCGCCACCTCCTGATGACGTCGACGGTTCGCCGTATGTCACCTGACCATTGGATGTTGAGGATGATGATCCATTATTGTATGAATGATGATAGTCTTGGCTCGGACTTCTGGAAAATTAAATTTAGAAAAATTTGGAAAAAAAACTTTTTTCAAAAATTTTGGATCTTTAATTTTTGAATTTCTCTAAATGTCTTAATTTTCAATCAATTTTGATGGGATAAAAAGCAAAAAATAGTTTGGAAATGAGCTTTTTGGAAAATATAATAAAATATCCCACATTTGATTTCTAGTCTCTAAAATTTTCAGACAAATAACATTCTTCTTTTTTTCGAAATTTGACCAAAAAATCTTCATTTTCCATCAATTTTCATCGGATAAAAACTGTTAAAAATTAAAAACTCACTGAAAGTCCAAAAATCCCTGATACTGTTGTTGTGGGGGCGCCGTCGAGGGTCCTTGATGATGATGGTGGGAGGAGGACGGCAGTCGAAGCGGCGGGAGCTGATGATGATGGGGTGGATAAGAGGCGAGGGAGGAATGTCCCTCCATCGGCTCTATTTGCGCATTTACCTGTAAATTATGATTTTGAATGTTTGAATTTCAAAAAATTCAAAAATTTCCTCAAATTTTAACATTGATTTTGCAAAAATTGGCCAAAAATTGAGAAAGTTATAATTTTTAGAAAAATTTAATATTTTTTTTAATTTCAATGATTCTAACTTTTTCAGTTTTTGATTGATTTAAGTATTTTGCATATCAAAATGTAGGAAATACAATTTCCTACATTTTGGTATAGCTTTCATGAAATTCGGTGAAAAATTGACAAAGTTATAGCATATTGAAAAAAAATGTCAAAAATTTTTTTTTTCAGAATTT</canonical>
            <polymorphic>CTCACCGAGTGTAGCGGAGCTAGCTCATAGCTCGCTGAACTCGGATTTGAATTCGAGTTTTGAAATTGGTGGGACGGTGGATTTTGAGAATTCGTCGTCCCATTCTGAGCACCGCCGTAAGCTCCGCCACCTCCTGATGACGTCGACGGTTCGCCGTATGTCACCTGACCATTGGATGTTGAGGATGATGATCCATTATTGTATGAATGATGATAGTCTTGGCTCGGACTTCTGGAAAATTAAATTTAGAAAAATTTGGAAAAAAAACTTTTTTCAAAAATTTTGGATCTTTAATTTTTGAATTTCTCTAAATGTCTTAATTTTCAATCAATTTTGATGGGATAAAAAGCAAAAAATAGTTTGGAAATGAGCTTTTTGGAAAATATAATAAAATATCCCACATTTGATTTCTAGTCTCTAAAATTTTCAGACAAATAACATTCTTCTTTTTTTCGAAATTTGACCAAAAAATCTTCATTTTCCATCAATTTTCATCGGARAAAAACTGTTAAAAATTAAAAACTCACTGAAAGTCCAAAAATCCCTGATACTGTTGTTGTGGGGGCGCCGTCGAGGGTCCTTGATGATGATGGTGGGAGGAGGACGGCAGTCGAAGCGGCGGGAGCTGATGATGATGGGGTGGATAAGAGGCGAGGGAGGAATGTCCCTCCATCGGCTCTATTTGCGCATTTACCTGTAAATTATGATTTTGAATGTTTGAATTTCAAAAAATTCAAAAATTTCCTCAAATTTTAACATTGATTTTGCAAAAATTGGCCAAAAATTGAGAAAGTTATAATTTTTAGAAAAATTTAATATTTTTTTTAATTTCAATGATTCTAACTTTTTCAGTTTTTGATTGATTTAAGTATTTTGCATATCAAAATGTAGGAAATACAATTTCCTACATTTTGGTATAGCTTTCATGAAATTCGGTGAAAAATTGACAAAGTTATAGCATATTGAAAAAAAATGTCAAAAATTTTTTTTTTCAGAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAATCAATTTTGATGGGATA</pcr_primer_p1>
		<pcr_primer_p2>ACAACAACAGTATCAGGGATTT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>TCAATCAATTTTGATGGGATAAAAAGCAAAAAATAGTTTGGAAATGAGCTTTTTGGAAAATATAATAAAATATCCCACATTTGATTTCTAGTCTCTAAAATTTTCAGACAAATAACATTCTTCTTTTTTTCGAAATTTGACCAAAAAATCTTCATTTTCCATCAATTTTCATCGGATAAAAACTGTTAAAAATTAAAAACTCACTGAAAGTCCAAAAATCCCTGATACTGTTGTTGT</canonical_amplicon>
		<polymorphic_amplicon>TCAATCAATTTTGATGGGATAAAAAGCAAAAAATAGTTTGGAAATGAGCTTTTTGGAAAATATAATAAAATATCCCACATTTGATTTCTAGTCTCTAAAATTTTCAGACAAATAACATTCTTCTTTTTTTCGAAATTTGACCAAAAAATCTTCATTTTCCATCAATTTTCATCGGARAAAAACTGTTAAAAATTAAAAACTCACTGAAAGTCCAAAAATCCCTGATACTGTTGTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35608</snp_id>
        <super_contig>c009802110.Contig1</super_contig>
        <contig_pos>108262</contig_pos>
        <strand>+</strand>
        <context>GTTTTCAAAG[A/G]CTTCTAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCCCATTGTGAAATTCCAATTCTTACCAAGAATTTCTTGGTTTTCAAAG</left_flank>
        <right_flank>CTTCTAATTTTTTCAAATTATTGAATTTTCATGAAATTTACATCAAAACG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGAAGTTTTGAAGAGACGCAGACAGTTAGAGTGTCTCGTCGTTTGCGTCTTTCGCCTTCAAAGCCTCAAATGGCTATCTCTCAGCTCCTAGATGAGCTAGAAAGCTGATTTTTGACTAAATTGAAGAAAATATTGTCTATTTTATGGATGTCTACAAAAAAAAACAAAACATATTTTTTGAAATTGAAAATTCAAAAGTTGGGTTTCTTCAAATCGATCACTAAAATCATTGGTTCAAATAAAGCCTACCACAGAAAAAATCACCTCTCTAGCTCTTCTAGAACTTGAGATACAGCCGTTTGAAGTTTTGAAGAGACGCAGACAGTTAGAGTGTCTAGTCGTCTACGTCTCTCGCATTCAAAACTTTGAATGCCCATATCTCGGCTTAAAATGGAGCTAGAAAACTCAAACTTTTTGTGAAATCTGTCATTTTTAATTTCTGATAATCCCCATTGTGAAATTCCAATTCTTACCAAGAATTTCTTGGTTTTCAAAGACTTCTAATTTTTTCAAATTATTGAATTTTCATGAAATTTACATCAAAACGTTGAAAATTGAATTTTCCTACAGTTTGGTATAATTTTCCCAAAAATCGACCCAAAATTTTCTTCGAAAATTCAAGAAATAATTGCGGACAAACAGAAATACAGACAGAAGACCCTTCGAACCCTCTTATTTTTCCCTACAAGTGCTTTTTAAGCATATTCAAGAAGCACCTGTTTCCTAGCCTAGAATTCTCTTCTTTCTGGGGTTTCTAAGCCAGTTTCCGCATGTCCGGATGTCCGAATGTCCACAGATCGATATTTATTCTACTGTGATTTTTGTAAAATCAAAATCTAGAAAATTTGATTTTTCTAGATAAAAAAGCTATTACGAATTCGAATCAGATGATTTCCGGATGTCCAGATGTCAACACAAAATAAATGGGAAAAAAAAGAGAGAAAACAAAATGGTCCCATTCGGAAAACGAGGGAGGGGGAATATCTAATGGCCGGGT</canonical>
            <polymorphic>ATTTGAAGTTTTGAAGAGACGCAGACAGTTAGAGTGTCTCGTCGTTTGCGTCTTTCGCCTTCAAAGCCTCAAATGGCTATCTCTCAGCTCCTAGATGAGCTAGAAAGCTGATTTTTGACTAAATTGAAGAAAATATTGTCTATTTTATGGATGTCTACAAAAAAAAACAAAACATATTTTTTGAAATTGAAAATTCAAAAGTTGGGTTTCTTCAAATCGATCACTAAAATCATTGGTTCAAATAAAGCCTACCACAGAAAAAATCACCTCTCTAGCTCTTCTAGAACTTGAGATACAGCCGTTTGAAGTTTTGAAGAGACGCAGACAGTTAGAGTGTCTAGTCGTCTACGTCTCTCGCATTCAAAACTTTGAATGCCCATATCTCGGCTTAAAATGGAGCTAGAAAACTCAAACTTTTTGTGAAATCTGTCATTTTTAATTTCTGATAATCCCCATTGTGAAATTCCAATTCTTACCAAGAATTTCTTGGTTTTCAAAGRCTTCTAATTTTTTCAAATTATTGAATTTTCATGAAATTTACATCAAAACGTTGAAAATTGAATTTTCCTACAGTTTGGTATAATTTTCCCAAAAATCGACCCAAAATTTTCTTCGAAAATTCAAGAAATAATTGCGGACAAACAGAAATACAGACAGAAGACCCTTCGAACCCTCTTATTTTTCCCTACAAGTGCTTTTTAAGCATATTCAAGAAGCACCTGTTTCCTAGCCTAGAATTCTCTTCTTTCTGGGGTTTCTAAGCCAGTTTCCGCATGTCCGGATGTCCGAATGTCCACAGATCGATATTTATTCTACTGTGATTTTTGTAAAATCAAAATCTAGAAAATTTGATTTTTCTAGATAAAAAAGCTATTACGAATTCGAATCAGATGATTTCCGGATGTCCAGATGTCAACACAAAATAAATGGGAAAAAAAAGAGAGAAAACAAAATGGTCCCATTCGGAAAACGAGGGAGGGGGAATATCTAATGGCCGGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATCTGTCATTTTTAATTTCTGA</pcr_primer_p1>
		<pcr_primer_p2>AAGGGTCTTCTGTCTGTATTTCT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAAATCTGTCATTTTTAATTTCTGATAATCCCCATTGTGAAATTCCAATTCTTACCAAGAATTTCTTGGTTTTCAAAGACTTCTAATTTTTTCAAATTATTGAATTTTCATGAAATTTACATCAAAACGTTGAAAATTGAATTTTCCTACAGTTTGGTATAATTTTCCCAAAAATCGACCCAAAATTTTCTTCGAAAATTCAAGAAATAATTGCGGACAAACAGAAATACAGACAGAAGACCCTT</canonical_amplicon>
		<polymorphic_amplicon>GAAATCTGTCATTTTTAATTTCTGATAATCCCCATTGTGAAATTCCAATTCTTACCAAGAATTTCTTGGTTTTCAAAGRCTTCTAATTTTTTCAAATTATTGAATTTTCATGAAATTTACATCAAAACGTTGAAAATTGAATTTTCCTACAGTTTGGTATAATTTTCCCAAAAATCGACCCAAAATTTTCTTCGAAAATTCAAGAAATAATTGCGGACAAACAGAAATACAGACAGAAGACCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35614</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>30788</contig_pos>
        <strand></strand>
        <context>attcttgtgc[C/T]aaaatcaaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTAAAGGCGCATAGGTACAAAAACTACCGTAGCTCGGTTATTCTTGTGC</left_flank>
        <right_flank>AAAATCAAAAATGTCTACAGTTTTGAATTTTTGACGTTTAGACTGTTCAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTAAATGTTTTAAATTCAGAATTCTTGGAATCGGTAGATTTTCAGCAAAGGCTCAGCTACATTCCGTTCGGACTGCATGACTACCATCTGTATCATTCGCGACAAAGTCAGTGAGCAAACAATGAAAATGCAGATACGCGTTGAAGTCGTTTGTGGTGATTGCTCAGCCTTATTTTGAATTTCAAAAAAAATTGTATTTTCAGAACTCAATCAAGAGAGTGTGGACCATTGTCTGAAACTAATCGATCCCAAAATTTCGGCGATTTTGACAATTGAGAAGGAGAAATTGTATGCGGCAGCGTTGAAGGTGAGTTGGAGTCTCCAACTTGGAGAATCTGGAATTCTGGAAATCTGGAATTCGGTGAAAATTGAATTTTCGAACTTCCCGAACCGCGGTGATTAAAATGAGTATAAACACAACCTAGTTTCCAAAGAGTAGTTTTTTGGATTAAAGGCGCATAGGTACAAAAACTACCGTAGCTCGGTTATTCTTGTGCCAAAATCAAAAATGTCTACAGTTTTGAATTTTTGACGTTTAGACTGTTCAAATGAGTATAATCATGACCTACTTTCCAAAAAGTTCAATTTTTGGAAATTTTGGGTTTCGCCAACAAAAATGACGAAAATTGAAATTTTCAACAAACCATAGCATGTTTATACTCGTTTCAAAGCTCTTGACGTCCTAATTTCGACTAGTTAAACAAAAATTAATTGAGAAAAACCTATAAGAAGTTATAGCAAACTTTCTTCAAGTTCAAATTCGCATAGCCATAAAAACCATCATAACTCTGTTCATTTTTAATTTAAACTCCTAATAATTAGATTTTTGATTTTTTCTCTTAAATACGGTTCAAATGAGTATAAACACGATCCACTTTTGATAAATTAGATTTTTCAAGTTTAAAGGCGCATAGCCCAATTTTTCTTCAACGTCACTACAGAAGAATTCCAAAAATAAACGTTTTCGAAACTCTTTGATATTCCATCCTCCTCCTAAT</canonical>
            <polymorphic>CTTTAAATGTTTTAAATTCAGAATTCTTGGAATCGGTAGATTTTCAGCAAAGGCTCAGCTACATTCCGTTCGGACTGCATGACTACCATCTGTATCATTCGCGACAAAGTCAGTGAGCAAACAATGAAAATGCAGATACGCGTTGAAGTCGTTTGTGGTGATTGCTCAGCCTTATTTTGAATTTCAAAAAAAATTGTATTTTCAGAACTCAATCAAGAGAGTGTGGACCATTGTCTGAAACTAATCGATCCCAAAATTTCGGCGATTTTGACAATTGAGAAGGAGAAATTGTATGCGGCAGCGTTGAAGGTGAGTTGGAGTCTCCAACTTGGAGAATCTGGAATTCTGGAAATCTGGAATTCGGTGAAAATTGAATTTTCGAACTTCCCGAACCGCGGTGATTAAAATGAGTATAAACACAACCTAGTTTCCAAAGAGTAGTTTTTTGGATTAAAGGCGCATAGGTACAAAAACTACCGTAGCTCGGTTATTCTTGTGCYAAAATCAAAAATGTCTACAGTTTTGAATTTTTGACGTTTAGACTGTTCAAATGAGTATAATCATGACCTACTTTCCAAAAAGTTCAATTTTTGGAAATTTTGGGTTTCGCCAACAAAAATGACGAAAATTGAAATTTTCAACAAACCATAGCATGTTTATACTCGTTTCAAAGCTCTTGACGTCCTAATTTCGACTAGTTAAACAAAAATTAATTGAGAAAAACCTATAAGAAGTTATAGCAAACTTTCTTCAAGTTCAAATTCGCATAGCCATAAAAACCATCATAACTCTGTTCATTTTTAATTTAAACTCCTAATAATTAGATTTTTGATTTTTTCTCTTAAATACGGTTCAAATGAGTATAAACACGATCCACTTTTGATAAATTAGATTTTTCAAGTTTAAAGGCGCATAGCCCAATTTTTCTTCAACGTCACTACAGAAGAATTCCAAAAATAAACGTTTTCGAAACTCTTTGATATTCCATCCTCCTCCTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTGGAATTCTGGAAATCTG</pcr_primer_p1>
		<pcr_primer_p2>TGAACTTGAAGAAAGTTTGCTAT</pcr_primer_p2>
		<pcr_amplicon_size>424</pcr_amplicon_size>
		<canonical_amplicon>ATCTGGAATTCTGGAAATCTGGAATTCGGTGAAAATTGAATTTTCGAACTTCCCGAACCGCGGTGATTAAAATGAGTATAAACACAACCTAGTTTCCAAAGAGTAGTTTTTTGGATTAAAGGCGCATAGGTACAAAAACTACCGTAGCTCGGTTATTCTTGTGCCAAAATCAAAAATGTCTACAGTTTTGAATTTTTGACGTTTAGACTGTTCAAATGAGTATAATCATGACCTACTTTCCAAAAAGTTCAATTTTTGGAAATTTTGGGTTTCGCCAACAAAAATGACGAAAATTGAAATTTTCAACAAACCATAGCATGTTTATACTCGTTTCAAAGCTCTTGACGTCCTAATTTCGACTAGTTAAACAAAAATTAATTGAGAAAAACCTATAAGAAGTTATAGCAAACTTTCTTCAAGTTCA</canonical_amplicon>
		<polymorphic_amplicon>ATCTGGAATTCTGGAAATCTGGAATTCGGTGAAAATTGAATTTTCGAACTTCCCGAACCGCGGTGATTAAAATGAGTATAAACACAACCTAGTTTCCAAAGAGTAGTTTTTTGGATTAAAGGCGCATAGGTACAAAAACTACCGTAGCTCGGTTATTCTTGTGCYAAAATCAAAAATGTCTACAGTTTTGAATTTTTGACGTTTAGACTGTTCAAATGAGTATAATCATGACCTACTTTCCAAAAAGTTCAATTTTTGGAAATTTTGGGTTTCGCCAACAAAAATGACGAAAATTGAAATTTTCAACAAACCATAGCATGTTTATACTCGTTTCAAAGCTCTTGACGTCCTAATTTCGACTAGTTAAACAAAAATTAATTGAGAAAAACCTATAAGAAGTTATAGCAAACTTTCTTCAAGTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35615</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>30819</contig_pos>
        <strand></strand>
        <context>ttttgaattt[T/C]tgacgtttag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGCTCGGTTATTCTTGTGCCAAAATCAAAAATGTCTACAGTTTTGAATTT</left_flank>
        <right_flank>TGACGTTTAGACTGTTCAAATGAGTATAATCATGACCTACTTTCCAAAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGGTAGATTTTCAGCAAAGGCTCAGCTACATTCCGTTCGGACTGCATGACTACCATCTGTATCATTCGCGACAAAGTCAGTGAGCAAACAATGAAAATGCAGATACGCGTTGAAGTCGTTTGTGGTGATTGCTCAGCCTTATTTTGAATTTCAAAAAAAATTGTATTTTCAGAACTCAATCAAGAGAGTGTGGACCATTGTCTGAAACTAATCGATCCCAAAATTTCGGCGATTTTGACAATTGAGAAGGAGAAATTGTATGCGGCAGCGTTGAAGGTGAGTTGGAGTCTCCAACTTGGAGAATCTGGAATTCTGGAAATCTGGAATTCGGTGAAAATTGAATTTTCGAACTTCCCGAACCGCGGTGATTAAAATGAGTATAAACACAACCTAGTTTCCAAAGAGTAGTTTTTTGGATTAAAGGCGCATAGGTACAAAAACTACCGTAGCTCGGTTATTCTTGTGCCAAAATCAAAAATGTCTACAGTTTTGAATTTTTGACGTTTAGACTGTTCAAATGAGTATAATCATGACCTACTTTCCAAAAAGTTCAATTTTTGGAAATTTTGGGTTTCGCCAACAAAAATGACGAAAATTGAAATTTTCAACAAACCATAGCATGTTTATACTCGTTTCAAAGCTCTTGACGTCCTAATTTCGACTAGTTAAACAAAAATTAATTGAGAAAAACCTATAAGAAGTTATAGCAAACTTTCTTCAAGTTCAAATTCGCATAGCCATAAAAACCATCATAACTCTGTTCATTTTTAATTTAAACTCCTAATAATTAGATTTTTGATTTTTTCTCTTAAATACGGTTCAAATGAGTATAAACACGATCCACTTTTGATAAATTAGATTTTTCAAGTTTAAAGGCGCATAGCCCAATTTTTCTTCAACGTCACTACAGAAGAATTCCAAAAATAAACGTTTTCGAAACTCTTTGATATTCCATCCTCCTCCTAATGACTTTACGAATAAAACAGAGTGTCCAATTA</canonical>
            <polymorphic>ATCGGTAGATTTTCAGCAAAGGCTCAGCTACATTCCGTTCGGACTGCATGACTACCATCTGTATCATTCGCGACAAAGTCAGTGAGCAAACAATGAAAATGCAGATACGCGTTGAAGTCGTTTGTGGTGATTGCTCAGCCTTATTTTGAATTTCAAAAAAAATTGTATTTTCAGAACTCAATCAAGAGAGTGTGGACCATTGTCTGAAACTAATCGATCCCAAAATTTCGGCGATTTTGACAATTGAGAAGGAGAAATTGTATGCGGCAGCGTTGAAGGTGAGTTGGAGTCTCCAACTTGGAGAATCTGGAATTCTGGAAATCTGGAATTCGGTGAAAATTGAATTTTCGAACTTCCCGAACCGCGGTGATTAAAATGAGTATAAACACAACCTAGTTTCCAAAGAGTAGTTTTTTGGATTAAAGGCGCATAGGTACAAAAACTACCGTAGCTCGGTTATTCTTGTGCCAAAATCAAAAATGTCTACAGTTTTGAATTTYTGACGTTTAGACTGTTCAAATGAGTATAATCATGACCTACTTTCCAAAAAGTTCAATTTTTGGAAATTTTGGGTTTCGCCAACAAAAATGACGAAAATTGAAATTTTCAACAAACCATAGCATGTTTATACTCGTTTCAAAGCTCTTGACGTCCTAATTTCGACTAGTTAAACAAAAATTAATTGAGAAAAACCTATAAGAAGTTATAGCAAACTTTCTTCAAGTTCAAATTCGCATAGCCATAAAAACCATCATAACTCTGTTCATTTTTAATTTAAACTCCTAATAATTAGATTTTTGATTTTTTCTCTTAAATACGGTTCAAATGAGTATAAACACGATCCACTTTTGATAAATTAGATTTTTCAAGTTTAAAGGCGCATAGCCCAATTTTTCTTCAACGTCACTACAGAAGAATTCCAAAAATAAACGTTTTCGAAACTCTTTGATATTCCATCCTCCTCCTAATGACTTTACGAATAAAACAGAGTGTCCAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTGGAATTCTGGAAATCTG</pcr_primer_p1>
		<pcr_primer_p2>TGAACTTGAAGAAAGTTTGCTAT</pcr_primer_p2>
		<pcr_amplicon_size>424</pcr_amplicon_size>
		<canonical_amplicon>ATCTGGAATTCTGGAAATCTGGAATTCGGTGAAAATTGAATTTTCGAACTTCCCGAACCGCGGTGATTAAAATGAGTATAAACACAACCTAGTTTCCAAAGAGTAGTTTTTTGGATTAAAGGCGCATAGGTACAAAAACTACCGTAGCTCGGTTATTCTTGTGCCAAAATCAAAAATGTCTACAGTTTTGAATTTTTGACGTTTAGACTGTTCAAATGAGTATAATCATGACCTACTTTCCAAAAAGTTCAATTTTTGGAAATTTTGGGTTTCGCCAACAAAAATGACGAAAATTGAAATTTTCAACAAACCATAGCATGTTTATACTCGTTTCAAAGCTCTTGACGTCCTAATTTCGACTAGTTAAACAAAAATTAATTGAGAAAAACCTATAAGAAGTTATAGCAAACTTTCTTCAAGTTCA</canonical_amplicon>
		<polymorphic_amplicon>ATCTGGAATTCTGGAAATCTGGAATTCGGTGAAAATTGAATTTTCGAACTTCCCGAACCGCGGTGATTAAAATGAGTATAAACACAACCTAGTTTCCAAAGAGTAGTTTTTTGGATTAAAGGCGCATAGGTACAAAAACTACCGTAGCTCGGTTATTCTTGTGCCAAAATCAAAAATGTCTACAGTTTTGAATTTYTGACGTTTAGACTGTTCAAATGAGTATAATCATGACCTACTTTCCAAAAAGTTCAATTTTTGGAAATTTTGGGTTTCGCCAACAAAAATGACGAAAATTGAAATTTTCAACAAACCATAGCATGTTTATACTCGTTTCAAAGCTCTTGACGTCCTAATTTCGACTAGTTAAACAAAAATTAATTGAGAAAAACCTATAAGAAGTTATAGCAAACTTTCTTCAAGTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35616</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>30980</contig_pos>
        <strand></strand>
        <context>gtcctaattt[C/T]gactagttaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAACCATAGCATGTTTATACTCGTTTCAAAGCTCTTGACGTCCTAATTT</left_flank>
        <right_flank>GACTAGTTAAACAAAAATTAATTGAGAAAAACCTATAAGAAGTTATAGCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGTATTTTCAGAACTCAATCAAGAGAGTGTGGACCATTGTCTGAAACTAATCGATCCCAAAATTTCGGCGATTTTGACAATTGAGAAGGAGAAATTGTATGCGGCAGCGTTGAAGGTGAGTTGGAGTCTCCAACTTGGAGAATCTGGAATTCTGGAAATCTGGAATTCGGTGAAAATTGAATTTTCGAACTTCCCGAACCGCGGTGATTAAAATGAGTATAAACACAACCTAGTTTCCAAAGAGTAGTTTTTTGGATTAAAGGCGCATAGGTACAAAAACTACCGTAGCTCGGTTATTCTTGTGCCAAAATCAAAAATGTCTACAGTTTTGAATTTTTGACGTTTAGACTGTTCAAATGAGTATAATCATGACCTACTTTCCAAAAAGTTCAATTTTTGGAAATTTTGGGTTTCGCCAACAAAAATGACGAAAATTGAAATTTTCAACAAACCATAGCATGTTTATACTCGTTTCAAAGCTCTTGACGTCCTAATTTCGACTAGTTAAACAAAAATTAATTGAGAAAAACCTATAAGAAGTTATAGCAAACTTTCTTCAAGTTCAAATTCGCATAGCCATAAAAACCATCATAACTCTGTTCATTTTTAATTTAAACTCCTAATAATTAGATTTTTGATTTTTTCTCTTAAATACGGTTCAAATGAGTATAAACACGATCCACTTTTGATAAATTAGATTTTTCAAGTTTAAAGGCGCATAGCCCAATTTTTCTTCAACGTCACTACAGAAGAATTCCAAAAATAAACGTTTTCGAAACTCTTTGATATTCCATCCTCCTCCTAATGACTTTACGAATAAAACAGAGTGTCCAATTACCGGAACTGACGGTGCCCCCCCCCCCCCCCCTCTCTCTTCTGAATCCCCGCGCACGTCTCCTAAATGAAAATTGATTCTCCAAAAAAAAAAAACTTCAGGAGTTGGAATCCAACAACGACAACGTCTTTAGTTTCCTGTCACCAGCCAACGCGAGACTTCT</canonical>
            <polymorphic>ATTGTATTTTCAGAACTCAATCAAGAGAGTGTGGACCATTGTCTGAAACTAATCGATCCCAAAATTTCGGCGATTTTGACAATTGAGAAGGAGAAATTGTATGCGGCAGCGTTGAAGGTGAGTTGGAGTCTCCAACTTGGAGAATCTGGAATTCTGGAAATCTGGAATTCGGTGAAAATTGAATTTTCGAACTTCCCGAACCGCGGTGATTAAAATGAGTATAAACACAACCTAGTTTCCAAAGAGTAGTTTTTTGGATTAAAGGCGCATAGGTACAAAAACTACCGTAGCTCGGTTATTCTTGTGCCAAAATCAAAAATGTCTACAGTTTTGAATTTTTGACGTTTAGACTGTTCAAATGAGTATAATCATGACCTACTTTCCAAAAAGTTCAATTTTTGGAAATTTTGGGTTTCGCCAACAAAAATGACGAAAATTGAAATTTTCAACAAACCATAGCATGTTTATACTCGTTTCAAAGCTCTTGACGTCCTAATTTYGACTAGTTAAACAAAAATTAATTGAGAAAAACCTATAAGAAGTTATAGCAAACTTTCTTCAAGTTCAAATTCGCATAGCCATAAAAACCATCATAACTCTGTTCATTTTTAATTTAAACTCCTAATAATTAGATTTTTGATTTTTTCTCTTAAATACGGTTCAAATGAGTATAAACACGATCCACTTTTGATAAATTAGATTTTTCAAGTTTAAAGGCGCATAGCCCAATTTTTCTTCAACGTCACTACAGAAGAATTCCAAAAATAAACGTTTTCGAAACTCTTTGATATTCCATCCTCCTCCTAATGACTTTACGAATAAAACAGAGTGTCCAATTACCGGAACTGACGGTGCCCCCCCCCCCCCCCCTCTCTCTTCTGAATCCCCGCGCACGTCTCCTAAATGAAAATTGATTCTCCAAAAAAAAAAAACTTCAGGAGTTGGAATCCAACAACGACAACGTCTTTAGTTTCCTGTCACCAGCCAACGCGAGACTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>312 276 224 134 54</canonical_bands>
                <polymorphic_bands>588 224 134 54</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTGGAATTCTGGAAATCTG</pcr_primer_p1>
		<pcr_primer_p2>TGAACTTGAAGAAAGTTTGCTAT</pcr_primer_p2>
		<pcr_amplicon_size>424</pcr_amplicon_size>
		<canonical_amplicon>ATCTGGAATTCTGGAAATCTGGAATTCGGTGAAAATTGAATTTTCGAACTTCCCGAACCGCGGTGATTAAAATGAGTATAAACACAACCTAGTTTCCAAAGAGTAGTTTTTTGGATTAAAGGCGCATAGGTACAAAAACTACCGTAGCTCGGTTATTCTTGTGCCAAAATCAAAAATGTCTACAGTTTTGAATTTTTGACGTTTAGACTGTTCAAATGAGTATAATCATGACCTACTTTCCAAAAAGTTCAATTTTTGGAAATTTTGGGTTTCGCCAACAAAAATGACGAAAATTGAAATTTTCAACAAACCATAGCATGTTTATACTCGTTTCAAAGCTCTTGACGTCCTAATTTCGACTAGTTAAACAAAAATTAATTGAGAAAAACCTATAAGAAGTTATAGCAAACTTTCTTCAAGTTCA</canonical_amplicon>
		<polymorphic_amplicon>ATCTGGAATTCTGGAAATCTGGAATTCGGTGAAAATTGAATTTTCGAACTTCCCGAACCGCGGTGATTAAAATGAGTATAAACACAACCTAGTTTCCAAAGAGTAGTTTTTTGGATTAAAGGCGCATAGGTACAAAAACTACCGTAGCTCGGTTATTCTTGTGCCAAAATCAAAAATGTCTACAGTTTTGAATTTTTGACGTTTAGACTGTTCAAATGAGTATAATCATGACCTACTTTCCAAAAAGTTCAATTTTTGGAAATTTTGGGTTTCGCCAACAAAAATGACGAAAATTGAAATTTTCAACAAACCATAGCATGTTTATACTCGTTTCAAAGCTCTTGACGTCCTAATTTYGACTAGTTAAACAAAAATTAATTGAGAAAAACCTATAAGAAGTTATAGCAAACTTTCTTCAAGTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35617</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>31135</contig_pos>
        <strand></strand>
        <context>ttctcttaaa[T/A]acggttcaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATTTTTAATTTAAACTCCTAATAATTAGATTTTTGATTTTTTCTCTTAAA</left_flank>
        <right_flank>ACGGTTCAAATGAGTATAAACACGATCCACTTTTGATAAATTAGATTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAATCTGGAATTCGGTGAAAATTGAATTTTCGAACTTCCCGAACCGCGGTGATTAAAATGAGTATAAACACAACCTAGTTTCCAAAGAGTAGTTTTTTGGATTAAAGGCGCATAGGTACAAAAACTACCGTAGCTCGGTTATTCTTGTGCCAAAATCAAAAATGTCTACAGTTTTGAATTTTTGACGTTTAGACTGTTCAAATGAGTATAATCATGACCTACTTTCCAAAAAGTTCAATTTTTGGAAATTTTGGGTTTCGCCAACAAAAATGACGAAAATTGAAATTTTCAACAAACCATAGCATGTTTATACTCGTTTCAAAGCTCTTGACGTCCTAATTTCGACTAGTTAAACAAAAATTAATTGAGAAAAACCTATAAGAAGTTATAGCAAACTTTCTTCAAGTTCAAATTCGCATAGCCATAAAAACCATCATAACTCTGTTCATTTTTAATTTAAACTCCTAATAATTAGATTTTTGATTTTTTCTCTTAAATACGGTTCAAATGAGTATAAACACGATCCACTTTTGATAAATTAGATTTTTCAAGTTTAAAGGCGCATAGCCCAATTTTTCTTCAACGTCACTACAGAAGAATTCCAAAAATAAACGTTTTCGAAACTCTTTGATATTCCATCCTCCTCCTAATGACTTTACGAATAAAACAGAGTGTCCAATTACCGGAACTGACGGTGCCCCCCCCCCCCCCCCTCTCTCTTCTGAATCCCCGCGCACGTCTCCTAAATGAAAATTGATTCTCCAAAAAAAAAAAACTTCAGGAGTTGGAATCCAACAACGACAACGTCTTTAGTTTCCTGTCACCAGCCAACGCGAGACTTCTAAGGGACCACGATATGATATACGAGAAAGCGGATGGTGTGGACGTTGAAGAATCGGGAATTCTGGCGATTGTTGAGAATCTGATGGTGGCCAGAGCCAAATTGAGTGGAAAATCGATAAAAGGAAAATTGGAGGCAATTAGGGACTTAATTGCCA</canonical>
            <polymorphic>GGAAATCTGGAATTCGGTGAAAATTGAATTTTCGAACTTCCCGAACCGCGGTGATTAAAATGAGTATAAACACAACCTAGTTTCCAAAGAGTAGTTTTTTGGATTAAAGGCGCATAGGTACAAAAACTACCGTAGCTCGGTTATTCTTGTGCCAAAATCAAAAATGTCTACAGTTTTGAATTTTTGACGTTTAGACTGTTCAAATGAGTATAATCATGACCTACTTTCCAAAAAGTTCAATTTTTGGAAATTTTGGGTTTCGCCAACAAAAATGACGAAAATTGAAATTTTCAACAAACCATAGCATGTTTATACTCGTTTCAAAGCTCTTGACGTCCTAATTTCGACTAGTTAAACAAAAATTAATTGAGAAAAACCTATAAGAAGTTATAGCAAACTTTCTTCAAGTTCAAATTCGCATAGCCATAAAAACCATCATAACTCTGTTCATTTTTAATTTAAACTCCTAATAATTAGATTTTTGATTTTTTCTCTTAAAWACGGTTCAAATGAGTATAAACACGATCCACTTTTGATAAATTAGATTTTTCAAGTTTAAAGGCGCATAGCCCAATTTTTCTTCAACGTCACTACAGAAGAATTCCAAAAATAAACGTTTTCGAAACTCTTTGATATTCCATCCTCCTCCTAATGACTTTACGAATAAAACAGAGTGTCCAATTACCGGAACTGACGGTGCCCCCCCCCCCCCCCCTCTCTCTTCTGAATCCCCGCGCACGTCTCCTAAATGAAAATTGATTCTCCAAAAAAAAAAAACTTCAGGAGTTGGAATCCAACAACGACAACGTCTTTAGTTTCCTGTCACCAGCCAACGCGAGACTTCTAAGGGACCACGATATGATATACGAGAAAGCGGATGGTGTGGACGTTGAAGAATCGGGAATTCTGGCGATTGTTGAGAATCTGATGGTGGCCAGAGCCAAATTGAGTGGAAAATCGATAAAAGGAAAATTGGAGGCAATTAGGGACTTAATTGCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGCAAACTTTCTTCAAGTTCA</pcr_primer_p1>
		<pcr_primer_p2>AAGAGTTTCGAAAACGTTTATTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATAGCAAACTTTCTTCAAGTTCAAATTCGCATAGCCATAAAAACCATCATAACTCTGTTCATTTTTAATTTAAACTCCTAATAATTAGATTTTTGATTTTTTCTCTTAAATACGGTTCAAATGAGTATAAACACGATCCACTTTTGATAAATTAGATTTTTCAAGTTTAAAGGCGCATAGCCCAATTTTTCTTCAACGTCACTACAGAAGAATTCCAAAAATAAACGTTTTCGAAACTCTT</canonical_amplicon>
		<polymorphic_amplicon>ATAGCAAACTTTCTTCAAGTTCAAATTCGCATAGCCATAAAAACCATCATAACTCTGTTCATTTTTAATTTAAACTCCTAATAATTAGATTTTTGATTTTTTCTCTTAAAWACGGTTCAAATGAGTATAAACACGATCCACTTTTGATAAATTAGATTTTTCAAGTTTAAAGGCGCATAGCCCAATTTTTCTTCAACGTCACTACAGAAGAATTCCAAAAATAAACGTTTTCGAAACTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35618</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>34227</contig_pos>
        <strand></strand>
        <context>TTGTGACCCC[T/G]tagctcggct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTTGGGGGATTGTTTAGGAGGTAAGACTAGAATGCTATCTTTGTGACCCC</left_flank>
        <right_flank>TAGCTCGGCTCAAAATGAAAATTCCTGTTTGATCTAAATACCAAAATGTA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGAAGCTTCAATTCCCGTGGAGCGGTCGAAGCGGCACTCAAACAATACTTTGCCTCACGCCCGGCTGGATTCTACCGCAATGGAATCCAAAAATTGAGGGAACGTTGGAGACATGTTGTTGATAATGATGGACAATATAATTAATTATTCGGTTATTTTTTCTTTGAGAAATAAACTATTGAAAAAGTGACAAAGACTTTCCCGCCAACCTAATATTTCACCTAATTCATTTATTTTGAAATAGTATTTCTTTTGATTGATTGTTTCTCCATCAGAAGTCTCCTGAAGACGAATGTTCAGATTATTATAGTCTAATTGTTTGGAAGATGTGTATGTATAAAAGACAGGAATTCTTTATAAATTACTTTTTGTTAACCGGAAGTCTCAAATATTACTTTCAAGAACTTAATGATCCTAGAGCATTGTTTGAATTGAGAAAGGCTACATTTTGGGGGATTGTTTAGGAGGTAAGACTAGAATGCTATCTTTGTGACCCCTTAGCTCGGCTCAAAATGAAAATTCCTGTTTGATCTAAATACCAAAATGTAGAACTTGAAAAGGCCTACATCATGATATATAACTCGGCTATGTTTGAATTAGAAGTTTTGAACCACACAGTCAACGAAAAGTAGTAGGCGCTGTTCTAGCCAATATTGCAACGGGTCTGCTTTGACTAACTTCTAAACGGGGTTAGAATATAATCTAGTTTTGCACTTTGCTTTTGAATTCATTTTGTACATTTTCATAGGGCCTTCAAAATGATATCTAATTCAATTATACTTGAGCCCCGAAATACCGTCGGCGCTACACGGTCGGATTTTGCTGTTTAGGCTGTTTTAGGTCCTCTGGCACCTAAATCAACTTTCCAATCTAATAAAATTATATATCACTTTGTAGATATTTTTAAGTTCTACATTTTGCTTTTTTATTCAAGCTGAAATTTTAATTTTGAGACAAGTTATGCGCCTGACAAGAACGCACATGAGTTTCGGTTGAAA</canonical>
            <polymorphic>GAAGAAGCTTCAATTCCCGTGGAGCGGTCGAAGCGGCACTCAAACAATACTTTGCCTCACGCCCGGCTGGATTCTACCGCAATGGAATCCAAAAATTGAGGGAACGTTGGAGACATGTTGTTGATAATGATGGACAATATAATTAATTATTCGGTTATTTTTTCTTTGAGAAATAAACTATTGAAAAAGTGACAAAGACTTTCCCGCCAACCTAATATTTCACCTAATTCATTTATTTTGAAATAGTATTTCTTTTGATTGATTGTTTCTCCATCAGAAGTCTCCTGAAGACGAATGTTCAGATTATTATAGTCTAATTGTTTGGAAGATGTGTATGTATAAAAGACAGGAATTCTTTATAAATTACTTTTTGTTAACCGGAAGTCTCAAATATTACTTTCAAGAACTTAATGATCCTAGAGCATTGTTTGAATTGAGAAAGGCTACATTTTGGGGGATTGTTTAGGAGGTAAGACTAGAATGCTATCTTTGTGACCCCKTAGCTCGGCTCAAAATGAAAATTCCTGTTTGATCTAAATACCAAAATGTAGAACTTGAAAAGGCCTACATCATGATATATAACTCGGCTATGTTTGAATTAGAAGTTTTGAACCACACAGTCAACGAAAAGTAGTAGGCGCTGTTCTAGCCAATATTGCAACGGGTCTGCTTTGACTAACTTCTAAACGGGGTTAGAATATAATCTAGTTTTGCACTTTGCTTTTGAATTCATTTTGTACATTTTCATAGGGCCTTCAAAATGATATCTAATTCAATTATACTTGAGCCCCGAAATACCGTCGGCGCTACACGGTCGGATTTTGCTGTTTAGGCTGTTTTAGGTCCTCTGGCACCTAAATCAACTTTCCAATCTAATAAAATTATATATCACTTTGTAGATATTTTTAAGTTCTACATTTTGCTTTTTTATTCAAGCTGAAATTTTAATTTTGAGACAAGTTATGCGCCTGACAAGAACGCACATGAGTTTCGGTTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGAGAAAGGCTACATTTTG</pcr_primer_p1>
		<pcr_primer_p2>TCTAACCCCGTTTAGAAGTTAGT</pcr_primer_p2>
		<pcr_amplicon_size>266</pcr_amplicon_size>
		<canonical_amplicon>AATTGAGAAAGGCTACATTTTGGGGGATTGTTTAGGAGGTAAGACTAGAATGCTATCTTTGTGACCCCTTAGCTCGGCTCAAAATGAAAATTCCTGTTTGATCTAAATACCAAAATGTAGAACTTGAAAAGGCCTACATCATGATATATAACTCGGCTATGTTTGAATTAGAAGTTTTGAACCACACAGTCAACGAAAAGTAGTAGGCGCTGTTCTAGCCAATATTGCAACGGGTCTGCTTTGACTAACTTCTAAACGGGGTTAGA</canonical_amplicon>
		<polymorphic_amplicon>AATTGAGAAAGGCTACATTTTGGGGGATTGTTTAGGAGGTAAGACTAGAATGCTATCTTTGTGACCCCKTAGCTCGGCTCAAAATGAAAATTCCTGTTTGATCTAAATACCAAAATGTAGAACTTGAAAAGGCCTACATCATGATATATAACTCGGCTATGTTTGAATTAGAAGTTTTGAACCACACAGTCAACGAAAAGTAGTAGGCGCTGTTCTAGCCAATATTGCAACGGGTCTGCTTTGACTAACTTCTAAACGGGGTTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35619</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>51928</contig_pos>
        <strand></strand>
        <context>GTTTTCATAG[T/G]TCTTGTTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GTCGGCCGCTTGTCTACCCTACCCCTTATATACGCGTTGCGTTTTCATAG</left_flank>
        <right_flank>TCTTGTTCTTCCGAGAACATATACTAAAATTGGAACAATACAGAGAAGAT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCAAGGTTTTTTAGTTTTTTTAGTTTTTGCTAGTGATCAAAAGTAAATATTCTATGTTTAGAGTGAGAAAAATAGATATAGAAAGGTCGAGAAATGAGAAAAAAAGTCAATAAGAAGTGTGAGAAATGGTCAATAAAGCGATGATTAGTCATTGTTTCGAATAAGGTTAGGTTTGGTTTCAAAAAATTGTACCGTCAATTCCAAAGATAATAGGGTTCGAGAAAACTATCATTTTAATACAGAAAACTAAAAATTCCTAAAACAAATTTTACATAATATTGTTCCTCTTTGAATTTCCTATTCAATACAAAAACAATTTTTTGAAAAACTCCATTCCACTCAAAGTTACAGCCATTTTAAGATGCCTCTCCCTGTCTCCCCCTCCTTCACCCCTAAGCCCCGCCCCTTTTACACACAAAACATAGCGGGCGGCGGAACCCGGGAAGTGTCGGCCGCTTGTCTACCCTACCCCTTATATACGCGTTGCGTTTTCATAGTTCTTGTTCTTCCGAGAACATATACTAAAATTGGAACAATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCAAATTCGTGAAGCGTTCCAAATTTTTTGACGAATTTTAGGTCAATGTAAGAATAATCAGTTTATCAAGAAAAATGGTCAGCAAATTTTTTAATCAATTTTATTAGGAATAGATAAGAAGAAGAAGAGATCGGTCGGCGAAAAAAAACCCCAAAAATGACCAAGAAGAAGAAGACGTCTGAATGTTTGCCCAGGCGGTAGTAGTAGTTGTAGTACCCATCCTATTTGTATATGCAAATTTTTCGTTCACTTCGCTTTTGGTTTCTTCGATCCACTTCGACTTTTGATGGCTGTCGTCGAACTGGCCTTCTTCATCGACTGTTTGCGTGTCTTTCTGGAATTTTCGACATGGACCATTGGATTCTGCGAAAAAAGAGGTGTCCTTACCTATTCTCATTGTCATCAACACCTTTGAGTACGGT</canonical>
            <polymorphic>CTTCAAGGTTTTTTAGTTTTTTTAGTTTTTGCTAGTGATCAAAAGTAAATATTCTATGTTTAGAGTGAGAAAAATAGATATAGAAAGGTCGAGAAATGAGAAAAAAAGTCAATAAGAAGTGTGAGAAATGGTCAATAAAGCGATGATTAGTCATTGTTTCGAATAAGGTTAGGTTTGGTTTCAAAAAATTGTACCGTCAATTCCAAAGATAATAGGGTTCGAGAAAACTATCATTTTAATACAGAAAACTAAAAATTCCTAAAACAAATTTTACATAATATTGTTCCTCTTTGAATTTCCTATTCAATACAAAAACAATTTTTTGAAAAACTCCATTCCACTCAAAGTTACAGCCATTTTAAGATGCCTCTCCCTGTCTCCCCCTCCTTCACCCCTAAGCCCCGCCCCTTTTACACACAAAACATAGCGGGCGGCGGAACCCGGGAAGTGTCGGCCGCTTGTCTACCCTACCCCTTATATACGCGTTGCGTTTTCATAGKTCTTGTTCTTCCGAGAACATATACTAAAATTGGAACAATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCAAATTCGTGAAGCGTTCCAAATTTTTTGACGAATTTTAGGTCAATGTAAGAATAATCAGTTTATCAAGAAAAATGGTCAGCAAATTTTTTAATCAATTTTATTAGGAATAGATAAGAAGAAGAAGAGATCGGTCGGCGAAAAAAAACCCCAAAAATGACCAAGAAGAAGAAGACGTCTGAATGTTTGCCCAGGCGGTAGTAGTAGTTGTAGTACCCATCCTATTTGTATATGCAAATTTTTCGTTCACTTCGCTTTTGGTTTCTTCGATCCACTTCGACTTTTGATGGCTGTCGTCGAACTGGCCTTCTTCATCGACTGTTTGCGTGTCTTTCTGGAATTTTCGACATGGACCATTGGATTCTGCGAAAAAAGAGGTGTCCTTACCTATTCTCATTGTCATCAACACCTTTGAGTACGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTCCATTCCACTCAAAGTTA</pcr_primer_p1>
		<pcr_primer_p2>CCATGCTAATCTTCTCTGTATTG</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>AACTCCATTCCACTCAAAGTTACAGCCATTTTAAGATGCCTCTCCCTGTCTCCCCCTCCTTCACCCCTAAGCCCCGCCCCTTTTACACACAAAACATAGCGGGCGGCGGAACCCGGGAAGTGTCGGCCGCTTGTCTACCCTACCCCTTATATACGCGTTGCGTTTTCATAGTTCTTGTTCTTCCGAGAACATATACTAAAATTGGAACAATACAGAGAAGATTAGCATGG</canonical_amplicon>
		<polymorphic_amplicon>AACTCCATTCCACTCAAAGTTACAGCCATTTTAAGATGCCTCTCCCTGTCTCCCCCTCCTTCACCCCTAAGCCCCGCCCCTTTTACACACAAAACATAGCGGGCGGCGGAACCCGGGAAGTGTCGGCCGCTTGTCTACCCTACCCCTTATATACGCGTTGCGTTTTCATAGKTCTTGTTCTTCCGAGAACATATACTAAAATTGGAACAATACAGAGAAGATTAGCATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35620</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>52104</contig_pos>
        <strand></strand>
        <context>TTTTTAATCA[A/G]TTTTATTAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAAGAATAATCAGTTTATCAAGAAAAATGGTCAGCAAATTTTTTAATCA</left_flank>
        <right_flank>TTTTATTAGGAATAGATAAGAAGAAGAAGAGATCGGTCGGCGAAAAAAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTTCAAAAAATTGTACCGTCAATTCCAAAGATAATAGGGTTCGAGAAAACTATCATTTTAATACAGAAAACTAAAAATTCCTAAAACAAATTTTACATAATATTGTTCCTCTTTGAATTTCCTATTCAATACAAAAACAATTTTTTGAAAAACTCCATTCCACTCAAAGTTACAGCCATTTTAAGATGCCTCTCCCTGTCTCCCCCTCCTTCACCCCTAAGCCCCGCCCCTTTTACACACAAAACATAGCGGGCGGCGGAACCCGGGAAGTGTCGGCCGCTTGTCTACCCTACCCCTTATATACGCGTTGCGTTTTCATAGTTCTTGTTCTTCCGAGAACATATACTAAAATTGGAACAATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCAAATTCGTGAAGCGTTCCAAATTTTTTGACGAATTTTAGGTCAATGTAAGAATAATCAGTTTATCAAGAAAAATGGTCAGCAAATTTTTTAATCAATTTTATTAGGAATAGATAAGAAGAAGAAGAGATCGGTCGGCGAAAAAAAACCCCAAAAATGACCAAGAAGAAGAAGACGTCTGAATGTTTGCCCAGGCGGTAGTAGTAGTTGTAGTACCCATCCTATTTGTATATGCAAATTTTTCGTTCACTTCGCTTTTGGTTTCTTCGATCCACTTCGACTTTTGATGGCTGTCGTCGAACTGGCCTTCTTCATCGACTGTTTGCGTGTCTTTCTGGAATTTTCGACATGGACCATTGGATTCTGCGAAAAAAGAGGTGTCCTTACCTATTCTCATTGTCATCAACACCTTTGAGTACGGTCTCCAACGCCTTCACGGAGATGTTGCGATTTTCGGCGGATTTCGCGTTTTGGACAAGCTTCTCGACGCGACGCTGGAAATTGGGAATATTAGAGGGAATCAACTTTGTGTTCAATTATCTCGGTTCCTGTAAGAGATATCGAAAAGTGGTCAACTAATAAAATGTTTATCATAATA</canonical>
            <polymorphic>GGTTTCAAAAAATTGTACCGTCAATTCCAAAGATAATAGGGTTCGAGAAAACTATCATTTTAATACAGAAAACTAAAAATTCCTAAAACAAATTTTACATAATATTGTTCCTCTTTGAATTTCCTATTCAATACAAAAACAATTTTTTGAAAAACTCCATTCCACTCAAAGTTACAGCCATTTTAAGATGCCTCTCCCTGTCTCCCCCTCCTTCACCCCTAAGCCCCGCCCCTTTTACACACAAAACATAGCGGGCGGCGGAACCCGGGAAGTGTCGGCCGCTTGTCTACCCTACCCCTTATATACGCGTTGCGTTTTCATAGTTCTTGTTCTTCCGAGAACATATACTAAAATTGGAACAATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCAAATTCGTGAAGCGTTCCAAATTTTTTGACGAATTTTAGGTCAATGTAAGAATAATCAGTTTATCAAGAAAAATGGTCAGCAAATTTTTTAATCARTTTTATTAGGAATAGATAAGAAGAAGAAGAGATCGGTCGGCGAAAAAAAACCCCAAAAATGACCAAGAAGAAGAAGACGTCTGAATGTTTGCCCAGGCGGTAGTAGTAGTTGTAGTACCCATCCTATTTGTATATGCAAATTTTTCGTTCACTTCGCTTTTGGTTTCTTCGATCCACTTCGACTTTTGATGGCTGTCGTCGAACTGGCCTTCTTCATCGACTGTTTGCGTGTCTTTCTGGAATTTTCGACATGGACCATTGGATTCTGCGAAAAAAGAGGTGTCCTTACCTATTCTCATTGTCATCAACACCTTTGAGTACGGTCTCCAACGCCTTCACGGAGATGTTGCGATTTTCGGCGGATTTCGCGTTTTGGACAAGCTTCTCGACGCGACGCTGGAAATTGGGAATATTAGAGGGAATCAACTTTGTGTTCAATTATCTCGGTTCCTGTAAGAGATATCGAAAAGTGGTCAACTAATAAAATGTTTATCATAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>211 161 140 102 64 55 54 51 35 27 23 18 13 12 12 12 10</canonical_bands>
                <polymorphic_bands>211 161 152 102 64 55 54 51 35 27 23 18 13 12 12 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCTTCCGAGAACATATACTAAAA</pcr_primer_p1>
		<pcr_primer_p2>GTCTTCTTCTTCTTGGTCATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTCTTCCGAGAACATATACTAAAATTGGAACAATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCAAATTCGTGAAGCGTTCCAAATTTTTTGACGAATTTTAGGTCAATGTAAGAATAATCAGTTTATCAAGAAAAATGGTCAGCAAATTTTTTAATCAATTTTATTAGGAATAGATAAGAAGAAGAAGAGATCGGTCGGCGAAAAAAAACCCCAAAAATGACCAAGAAGAAGAAGAC</canonical_amplicon>
		<polymorphic_amplicon>GTTCTTCCGAGAACATATACTAAAATTGGAACAATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCAAATTCGTGAAGCGTTCCAAATTTTTTGACGAATTTTAGGTCAATGTAAGAATAATCAGTTTATCAAGAAAAATGGTCAGCAAATTTTTTAATCARTTTTATTAGGAATAGATAAGAAGAAGAAGAGATCGGTCGGCGAAAAAAAACCCCAAAAATGACCAAGAAGAAGAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35621</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>52158</contig_pos>
        <strand></strand>
        <context>AAAAAAACCC[C/A]AAAAATGACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TATTAGGAATAGATAAGAAGAAGAAGAGATCGGTCGGCGAAAAAAAACCC</left_flank>
        <right_flank>AAAAATGACCAAGAAGAAGAAGACGTCTGAATGTTTGCCCAGGCGGTAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATTTTAATACAGAAAACTAAAAATTCCTAAAACAAATTTTACATAATATTGTTCCTCTTTGAATTTCCTATTCAATACAAAAACAATTTTTTGAAAAACTCCATTCCACTCAAAGTTACAGCCATTTTAAGATGCCTCTCCCTGTCTCCCCCTCCTTCACCCCTAAGCCCCGCCCCTTTTACACACAAAACATAGCGGGCGGCGGAACCCGGGAAGTGTCGGCCGCTTGTCTACCCTACCCCTTATATACGCGTTGCGTTTTCATAGTTCTTGTTCTTCCGAGAACATATACTAAAATTGGAACAATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCAAATTCGTGAAGCGTTCCAAATTTTTTGACGAATTTTAGGTCAATGTAAGAATAATCAGTTTATCAAGAAAAATGGTCAGCAAATTTTTTAATCAATTTTATTAGGAATAGATAAGAAGAAGAAGAGATCGGTCGGCGAAAAAAAACCCCAAAAATGACCAAGAAGAAGAAGACGTCTGAATGTTTGCCCAGGCGGTAGTAGTAGTTGTAGTACCCATCCTATTTGTATATGCAAATTTTTCGTTCACTTCGCTTTTGGTTTCTTCGATCCACTTCGACTTTTGATGGCTGTCGTCGAACTGGCCTTCTTCATCGACTGTTTGCGTGTCTTTCTGGAATTTTCGACATGGACCATTGGATTCTGCGAAAAAAGAGGTGTCCTTACCTATTCTCATTGTCATCAACACCTTTGAGTACGGTCTCCAACGCCTTCACGGAGATGTTGCGATTTTCGGCGGATTTCGCGTTTTGGACAAGCTTCTCGACGCGACGCTGGAAATTGGGAATATTAGAGGGAATCAACTTTGTGTTCAATTATCTCGGTTCCTGTAAGAGATATCGAAAAGTGGTCAACTAATAAAATGTTTATCATAATATCACAAACATTTTATTAATTGACTTATTTTTGATAGCTTTCACAGGAACCGAGA</canonical>
            <polymorphic>TCATTTTAATACAGAAAACTAAAAATTCCTAAAACAAATTTTACATAATATTGTTCCTCTTTGAATTTCCTATTCAATACAAAAACAATTTTTTGAAAAACTCCATTCCACTCAAAGTTACAGCCATTTTAAGATGCCTCTCCCTGTCTCCCCCTCCTTCACCCCTAAGCCCCGCCCCTTTTACACACAAAACATAGCGGGCGGCGGAACCCGGGAAGTGTCGGCCGCTTGTCTACCCTACCCCTTATATACGCGTTGCGTTTTCATAGTTCTTGTTCTTCCGAGAACATATACTAAAATTGGAACAATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCAAATTCGTGAAGCGTTCCAAATTTTTTGACGAATTTTAGGTCAATGTAAGAATAATCAGTTTATCAAGAAAAATGGTCAGCAAATTTTTTAATCAATTTTATTAGGAATAGATAAGAAGAAGAAGAGATCGGTCGGCGAAAAAAAACCCMAAAAATGACCAAGAAGAAGAAGACGTCTGAATGTTTGCCCAGGCGGTAGTAGTAGTTGTAGTACCCATCCTATTTGTATATGCAAATTTTTCGTTCACTTCGCTTTTGGTTTCTTCGATCCACTTCGACTTTTGATGGCTGTCGTCGAACTGGCCTTCTTCATCGACTGTTTGCGTGTCTTTCTGGAATTTTCGACATGGACCATTGGATTCTGCGAAAAAAGAGGTGTCCTTACCTATTCTCATTGTCATCAACACCTTTGAGTACGGTCTCCAACGCCTTCACGGAGATGTTGCGATTTTCGGCGGATTTCGCGTTTTGGACAAGCTTCTCGACGCGACGCTGGAAATTGGGAATATTAGAGGGAATCAACTTTGTGTTCAATTATCTCGGTTCCTGTAAGAGATATCGAAAAGTGGTCAACTAATAAAATGTTTATCATAATATCACAAACATTTTATTAATTGACTTATTTTTGATAGCTTTCACAGGAACCGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACGAATTTTAGGTCAATGTAAG</pcr_primer_p1>
		<pcr_primer_p2>GAAGAAACCAAAAGCGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GACGAATTTTAGGTCAATGTAAGAATAATCAGTTTATCAAGAAAAATGGTCAGCAAATTTTTTAATCAATTTTATTAGGAATAGATAAGAAGAAGAAGAGATCGGTCGGCGAAAAAAAACCCCAAAAATGACCAAGAAGAAGAAGACGTCTGAATGTTTGCCCAGGCGGTAGTAGTAGTTGTAGTACCCATCCTATTTGTATATGCAAATTTTTCGTTCACTTCGCTTTTGGTTTCTTC</canonical_amplicon>
		<polymorphic_amplicon>GACGAATTTTAGGTCAATGTAAGAATAATCAGTTTATCAAGAAAAATGGTCAGCAAATTTTTTAATCAATTTTATTAGGAATAGATAAGAAGAAGAAGAGATCGGTCGGCGAAAAAAAACCCMAAAAATGACCAAGAAGAAGAAGACGTCTGAATGTTTGCCCAGGCGGTAGTAGTAGTTGTAGTACCCATCCTATTTGTATATGCAAATTTTTCGTTCACTTCGCTTTTGGTTTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35622</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>78869</contig_pos>
        <strand></strand>
        <context>cagaatttgt[C/A]aacttacaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AACTTTGAGCCTATATATCTCGCTCCCTGTGAAAGATATCCAGAATTTGT</left_flank>
        <right_flank>AACTTACAAAATACTTTTGATAAAATGATAAATAATTTATCAGGTGACCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAACATTTTATCAGTTGATATATTTTTGATATATCTGATAGGAAGCGAGATAATTGAGCGCAAATTTGATAGCGTTGGAGCCCCTTCTGTCCAGGCGGTTTTTCTGAAACTTGTCAGTTAGATATTTAGCCAAATTAAGTATCATTTTGTAGCTCTCGCCGAGTTCTACATGTTACTTCTTCAATCAAACTGAATTTCCAATTTTAAATCGAATTATGGGTTGAACTAGTTAACTTTCTGGATTGCCCCCCTTGGACAATCCGGGATCGATGTTCGATAAATTTTAAACGGACTTTCATAGGCCTCTATTCCTTGAATTTCAGACCGTTTTTAAGTGATTTTAAGTCTTTCTTTATACTTTGTTGACTACTTCTCAGTAAATTAGATTCCGATTGAATTTCGCTTTTATTTTTCATGATTTTTAGTTCAAAGGACCCCACACTGTCAACTTTGAGCCTATATATCTCGCTCCCTGTGAAAGATATCCAGAATTTGTCAACTTACAAAATACTTTTGATAAAATGATAAATAATTTATCAGGTGACCACTTCTTTGACAGGAACCAAGATAAATTGGCTCGGTTTTTAGCTTGTAACTTTGTTCATTTACAAGATACTGTATCCCAAATAATATCATTTTGTAGCTATTGAACTCTTCTATCACTTCCAATTTAGTAAATCTAGAAATATTCATCCTGAAGAAAGTTATGATAGGGACCGTTTTTCAAGTATGGAAAATTAGCTGATTATGAGCAAAAATGACCCGAAAATACGAAAATGTTAATTTTTTCCAAATTTCAGTTCAAGTTCTCGGTTTAAGTTTAGGGTCCCACGTTGTACAGTATTTTTCGGACAGTCCTCTTCTTCCCCAAGAGCTCCTATTTTGTTTGGCCCCCGTATTTCTTCCCATAGGACCAGTTTTCTATGTATAATCGGTCCATTCGGTATTGCGGTGTGTGTGGTGGGTCGTAAACTTGCTCCAATCCTCCCGACGTACC</canonical>
            <polymorphic>GAAAAACATTTTATCAGTTGATATATTTTTGATATATCTGATAGGAAGCGAGATAATTGAGCGCAAATTTGATAGCGTTGGAGCCCCTTCTGTCCAGGCGGTTTTTCTGAAACTTGTCAGTTAGATATTTAGCCAAATTAAGTATCATTTTGTAGCTCTCGCCGAGTTCTACATGTTACTTCTTCAATCAAACTGAATTTCCAATTTTAAATCGAATTATGGGTTGAACTAGTTAACTTTCTGGATTGCCCCCCTTGGACAATCCGGGATCGATGTTCGATAAATTTTAAACGGACTTTCATAGGCCTCTATTCCTTGAATTTCAGACCGTTTTTAAGTGATTTTAAGTCTTTCTTTATACTTTGTTGACTACTTCTCAGTAAATTAGATTCCGATTGAATTTCGCTTTTATTTTTCATGATTTTTAGTTCAAAGGACCCCACACTGTCAACTTTGAGCCTATATATCTCGCTCCCTGTGAAAGATATCCAGAATTTGTMAACTTACAAAATACTTTTGATAAAATGATAAATAATTTATCAGGTGACCACTTCTTTGACAGGAACCAAGATAAATTGGCTCGGTTTTTAGCTTGTAACTTTGTTCATTTACAAGATACTGTATCCCAAATAATATCATTTTGTAGCTATTGAACTCTTCTATCACTTCCAATTTAGTAAATCTAGAAATATTCATCCTGAAGAAAGTTATGATAGGGACCGTTTTTCAAGTATGGAAAATTAGCTGATTATGAGCAAAAATGACCCGAAAATACGAAAATGTTAATTTTTTCCAAATTTCAGTTCAAGTTCTCGGTTTAAGTTTAGGGTCCCACGTTGTACAGTATTTTTCGGACAGTCCTCTTCTTCCCCAAGAGCTCCTATTTTGTTTGGCCCCCGTATTTCTTCCCATAGGACCAGTTTTCTATGTATAATCGGTCCATTCGGTATTGCGGTGTGTGTGGTGGGTCGTAAACTTGCTCCAATCCTCCCGACGTACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>500 234 133 82 51</canonical_bands>
                <polymorphic_bands>551 234 133 82</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGCTTTTATTTTTCATGATTTT</pcr_primer_p1>
		<pcr_primer_p2>ATCAGCTAATTTTCCATACTTGA</pcr_primer_p2>
		<pcr_amplicon_size>346</pcr_amplicon_size>
		<canonical_amplicon>CGCTTTTATTTTTCATGATTTTTAGTTCAAAGGACCCCACACTGTCAACTTTGAGCCTATATATCTCGCTCCCTGTGAAAGATATCCAGAATTTGTCAACTTACAAAATACTTTTGATAAAATGATAAATAATTTATCAGGTGACCACTTCTTTGACAGGAACCAAGATAAATTGGCTCGGTTTTTAGCTTGTAACTTTGTTCATTTACAAGATACTGTATCCCAAATAATATCATTTTGTAGCTATTGAACTCTTCTATCACTTCCAATTTAGTAAATCTAGAAATATTCATCCTGAAGAAAGTTATGATAGGGACCGTTTTTCAAGTATGGAAAATTAGCTGAT</canonical_amplicon>
		<polymorphic_amplicon>CGCTTTTATTTTTCATGATTTTTAGTTCAAAGGACCCCACACTGTCAACTTTGAGCCTATATATCTCGCTCCCTGTGAAAGATATCCAGAATTTGTMAACTTACAAAATACTTTTGATAAAATGATAAATAATTTATCAGGTGACCACTTCTTTGACAGGAACCAAGATAAATTGGCTCGGTTTTTAGCTTGTAACTTTGTTCATTTACAAGATACTGTATCCCAAATAATATCATTTTGTAGCTATTGAACTCTTCTATCACTTCCAATTTAGTAAATCTAGAAATATTCATCCTGAAGAAAGTTATGATAGGGACCGTTTTTCAAGTATGGAAAATTAGCTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35623</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>82672</contig_pos>
        <strand></strand>
        <context>attgattttt[T/C]tttCTCAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGCTCCGGCGCAGTTAACAATTTTAATTTATTTTCATTTTATTGATTTTT</left_flank>
        <right_flank>TTTCTCAAAGTCTGCATTTCCGCGTAACGGTGTTTGCACAATTACCTCTG</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTGGTTACGTAATTTTGGTATTGTCATACAAAAGAAGACATCATTGCTTCAAGGTCTCTTTTACGACCTTGGATAAGGATGAGCAGCAGGTGTCAGTAAAATCGAAAAGTACAGTAATCCGTAGCGGCGCCGAAAAGTGTCAAAAAGTGAACATGCACATCATTTCCTGAAGCCCAAAAATGCCGCCAAAAGGAAACAGAAATAAACAAAAAAGGATGCTTACTTTTTTGCCACTGTCTAGTACTACTATTTTTCGCATTATCACTAATTTTATTCGGGACAGGAGGAAAACTGATAACCAGTGCGGAGTCCTTTTGAAATTTTGCCGCCATGGAAAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACCCAGCCAACCAGTTTTACAACCACCACCCGACTGCTGAAATCATATATCATTTTTGCTCCGGCGCAGTTAACAATTTTAATTTATTTTCATTTTATTGATTTTTTTTTCTCAAAGTCTGCATTTCCGCGTAACGGTGTTTGCACAATTACCTCTGGCTATCGTACCGATTTTAGCGTTTAAGCAAGCGCGTAGCTCTGTCGGTATAGGTGAATGACTCATATGAAGCCGAATAGGACATTTTTTTTTCGAAATTTGAAAAATTCGAAAAATATCGAATTTTGGATTATATATTTTTCACTATTTTTGGTCCCTATTTTCCCTCATCTTCTTCTCTGTATATTTCTTATTCTCCCTCACTTTTCTTCCATTCGTAATCTTAAAATAACATTAGCGCAATTAATTTTTAACGACTACGACGATCATATTTCCTCTTCTTCGCAATATCAATGATAAAATATGTGGTTTGTATGTATCAATAGAGTGTATCAATCAGTATCTAGGTTACTGTAGAGAATTTTATTGGTTACTGTAGAAGCTTTATATCATTATTTTTTTTTGGTTACTGTAGAAGCTTTATATCATTAGTGACCATCAATAAGCTTGT</canonical>
            <polymorphic>TATTGGTTACGTAATTTTGGTATTGTCATACAAAAGAAGACATCATTGCTTCAAGGTCTCTTTTACGACCTTGGATAAGGATGAGCAGCAGGTGTCAGTAAAATCGAAAAGTACAGTAATCCGTAGCGGCGCCGAAAAGTGTCAAAAAGTGAACATGCACATCATTTCCTGAAGCCCAAAAATGCCGCCAAAAGGAAACAGAAATAAACAAAAAAGGATGCTTACTTTTTTGCCACTGTCTAGTACTACTATTTTTCGCATTATCACTAATTTTATTCGGGACAGGAGGAAAACTGATAACCAGTGCGGAGTCCTTTTGAAATTTTGCCGCCATGGAAAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACCCAGCCAACCAGTTTTACAACCACCACCCGACTGCTGAAATCATATATCATTTTTGCTCCGGCGCAGTTAACAATTTTAATTTATTTTCATTTTATTGATTTTTYTTTCTCAAAGTCTGCATTTCCGCGTAACGGTGTTTGCACAATTACCTCTGGCTATCGTACCGATTTTAGCGTTTAAGCAAGCGCGTAGCTCTGTCGGTATAGGTGAATGACTCATATGAAGCCGAATAGGACATTTTTTTTTCGAAATTTGAAAAATTCGAAAAATATCGAATTTTGGATTATATATTTTTCACTATTTTTGGTCCCTATTTTCCCTCATCTTCTTCTCTGTATATTTCTTATTCTCCCTCACTTTTCTTCCATTCGTAATCTTAAAATAACATTAGCGCAATTAATTTTTAACGACTACGACGATCATATTTCCTCTTCTTCGCAATATCAATGATAAAATATGTGGTTTGTATGTATCAATAGAGTGTATCAATCAGTATCTAGGTTACTGTAGAGAATTTTATTGGTTACTGTAGAAGCTTTATATCATTATTTTTTTTTGGTTACTGTAGAAGCTTTATATCATTAGTGACCATCAATAAGCTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAACCAGTTTTACAACCAC</pcr_primer_p1>
		<pcr_primer_p2>GCTTCATATGAGTCATTCACCTA</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>CCAACCAGTTTTACAACCACCACCCGACTGCTGAAATCATATATCATTTTTGCTCCGGCGCAGTTAACAATTTTAATTTATTTTCATTTTATTGATTTTTTTTTCTCAAAGTCTGCATTTCCGCGTAACGGTGTTTGCACAATTACCTCTGGCTATCGTACCGATTTTAGCGTTTAAGCAAGCGCGTAGCTCTGTCGGTATAGGTGAATGACTCATATGAAGC</canonical_amplicon>
		<polymorphic_amplicon>CCAACCAGTTTTACAACCACCACCCGACTGCTGAAATCATATATCATTTTTGCTCCGGCGCAGTTAACAATTTTAATTTATTTTCATTTTATTGATTTTTYTTTCTCAAAGTCTGCATTTCCGCGTAACGGTGTTTGCACAATTACCTCTGGCTATCGTACCGATTTTAGCGTTTAAGCAAGCGCGTAGCTCTGTCGGTATAGGTGAATGACTCATATGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35624</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>98976</contig_pos>
        <strand>+</strand>
        <context>GTATGGTTCC[C/T]GGTTAGTTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGTCACTTCAATTGATGCTGGATGAGAAGCAGGTTAAAGTATGGTTCC</left_flank>
        <right_flank>GGTTAGTTCGTTTTGGAGTTTAGGGGGAACGGAATCTAAGAATCTAAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACGCTATAACTTATCAGATGTGGGTCATGGAATAATCGACTACTATACTTGCAGTTCGATTACCTCGGTTCCTGTATAAGATATAAAAACTTTGTCCACTGATGAAATATTTGGCATAATATGACCTACATTTTATTAATTGACGAAATTTCGATATCTCTAATTGGAATCGAGATAATTGAGCTGCAAGATTAGATACTTGCTCAACTACTCCAGAATCTTTAAAGGCGCATACAGTACCTCAATTTTCAATTCTTACAGATGTAACAATTCCATCGTCAAACCGTTCATCAACTGCGACGACACCAAACGCATCAATGGCAACACTGTCATGGGCAATGGCATCGGAAGGGAAAAAGAAGAGACAACCATACAAAAAAGATCAAATTTCAAGACTGGAATATGAATATAAGATAAATCCATATCTGACGAATAAACGACGATCGGAATTGTCACTTCAATTGATGCTGGATGAGAAGCAGGTTAAAGTATGGTTCCAGGTTAGTTCGTTTTGGAGTTTAGGGGGAACGGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAAAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAACTTTTCTAACCCCCAGCATGTTTTACCAATTCTTTTCTATTTTTT</canonical>
            <polymorphic>TACGCTATAACTTATCAGATGTGGGTCATGGAATAATCGACTACTATACTTGCAGTTCGATTACCTCGGTTCCTGTATAAGATATAAAAACTTTGTCCACTGATGAAATATTTGGCATAATATGACCTACATTTTATTAATTGACGAAATTTCGATATCTCTAATTGGAATCGAGATAATTGAGCTGCAAGATTAGATACTTGCTCAACTACTCCAGAATCTTTAAAGGCGCATACAGTACCTCAATTTTCAATTCTTACAGATGTAACAATTCCATCGTCAAACCGTTCATCAACTGCGACGACACCAAACGCATCAATGGCAACACTGTCATGGGCAATGGCATCGGAAGGGAAAAAGAAGAGACAACCATACAAAAAAGATCAAATTTCAAGACTGGAATATGAATATAAGATAAATCCATATCTGACGAATAAACGACGATCGGAATTGTCACTTCAATTGATGCTGGATGAGAAGCAGGTTAAAGTATGGTTCCYGGTTAGTTCGTTTTGGAGTTTAGGGGGAACGGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAAAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAACTTTTCTAACCCCCAGCATGTTTTACCAATTCTTTTCTATTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCGGAATTGTCACTTCAA</pcr_primer_p1>
		<pcr_primer_p2>GGGGTTAGAAAAGTTAGATTCTT</pcr_primer_p2>
		<pcr_amplicon_size>526</pcr_amplicon_size>
		<canonical_amplicon>GATCGGAATTGTCACTTCAATTGATGCTGGATGAGAAGCAGGTTAAAGTATGGTTCCAGGTTAGTTCGTTTTGGAGTTTAGGGGGAACGGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAAAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAACTTTTCTAACCCC</canonical_amplicon>
		<polymorphic_amplicon>GATCGGAATTGTCACTTCAATTGATGCTGGATGAGAAGCAGGTTAAAGTATGGTTCCYGGTTAGTTCGTTTTGGAGTTTAGGGGGAACGGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAAAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAACTTTTCTAACCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35625</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>99027</contig_pos>
        <strand></strand>
        <context>AATCTAAGAA[C/T]CTAAGAATCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTTAGTTCGTTTTGGAGTTTAGGGGGAACGGAATCTAAGAATCTAAGAA</left_flank>
        <right_flank>CTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAACCTAAGAATCT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAGTTCGATTACCTCGGTTCCTGTATAAGATATAAAAACTTTGTCCACTGATGAAATATTTGGCATAATATGACCTACATTTTATTAATTGACGAAATTTCGATATCTCTAATTGGAATCGAGATAATTGAGCTGCAAGATTAGATACTTGCTCAACTACTCCAGAATCTTTAAAGGCGCATACAGTACCTCAATTTTCAATTCTTACAGATGTAACAATTCCATCGTCAAACCGTTCATCAACTGCGACGACACCAAACGCATCAATGGCAACACTGTCATGGGCAATGGCATCGGAAGGGAAAAAGAAGAGACAACCATACAAAAAAGATCAAATTTCAAGACTGGAATATGAATATAAGATAAATCCATATCTGACGAATAAACGACGATCGGAATTGTCACTTCAATTGATGCTGGATGAGAAGCAGGTTAAAGTATGGTTCCAGGTTAGTTCGTTTTGGAGTTTAGGGGGAACGGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAAAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAACTTTTCTAACCCCCAGCATGTTTTACCAATTCTTTTCTATTTTTTCACCTTAATTACCCTCTAATTACCCCCAATTAATACACAAATTTTCAGAAT</canonical>
            <polymorphic>GCAGTTCGATTACCTCGGTTCCTGTATAAGATATAAAAACTTTGTCCACTGATGAAATATTTGGCATAATATGACCTACATTTTATTAATTGACGAAATTTCGATATCTCTAATTGGAATCGAGATAATTGAGCTGCAAGATTAGATACTTGCTCAACTACTCCAGAATCTTTAAAGGCGCATACAGTACCTCAATTTTCAATTCTTACAGATGTAACAATTCCATCGTCAAACCGTTCATCAACTGCGACGACACCAAACGCATCAATGGCAACACTGTCATGGGCAATGGCATCGGAAGGGAAAAAGAAGAGACAACCATACAAAAAAGATCAAATTTCAAGACTGGAATATGAATATAAGATAAATCCATATCTGACGAATAAACGACGATCGGAATTGTCACTTCAATTGATGCTGGATGAGAAGCAGGTTAAAGTATGGTTCCAGGTTAGTTCGTTTTGGAGTTTAGGGGGAACGGAATCTAAGAATCTAAGAAYCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAAAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAACTTTTCTAACCCCCAGCATGTTTTACCAATTCTTTTCTATTTTTTCACCTTAATTACCCTCTAATTACCCCCAATTAATACACAAATTTTCAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTAGTTCGTTTTGGAGTTT</pcr_primer_p1>
		<pcr_primer_p2>GGGGTTAGAAAAGTTAGATTCTT</pcr_primer_p2>
		<pcr_amplicon_size>468</pcr_amplicon_size>
		<canonical_amplicon>GGTTAGTTCGTTTTGGAGTTTAGGGGGAACGGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAAAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAACTTTTCTAACCCC</canonical_amplicon>
		<polymorphic_amplicon>GGTTAGTTCGTTTTGGAGTTTAGGGGGAACGGAATCTAAGAATCTAAGAAYCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAAAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAACTTTTCTAACCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35626</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>99067</contig_pos>
        <strand></strand>
        <context>AATCTAAGAA[C/T]CTAAGAATCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCTAAGAACCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAA</left_flank>
        <right_flank>CTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAATCT</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGTCCACTGATGAAATATTTGGCATAATATGACCTACATTTTATTAATTGACGAAATTTCGATATCTCTAATTGGAATCGAGATAATTGAGCTGCAAGATTAGATACTTGCTCAACTACTCCAGAATCTTTAAAGGCGCATACAGTACCTCAATTTTCAATTCTTACAGATGTAACAATTCCATCGTCAAACCGTTCATCAACTGCGACGACACCAAACGCATCAATGGCAACACTGTCATGGGCAATGGCATCGGAAGGGAAAAAGAAGAGACAACCATACAAAAAAGATCAAATTTCAAGACTGGAATATGAATATAAGATAAATCCATATCTGACGAATAAACGACGATCGGAATTGTCACTTCAATTGATGCTGGATGAGAAGCAGGTTAAAGTATGGTTCCAGGTTAGTTCGTTTTGGAGTTTAGGGGGAACGGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAAAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAACTTTTCTAACCCCCAGCATGTTTTACCAATTCTTTTCTATTTTTTCACCTTAATTACCCTCTAATTACCCCCAATTAATACACAAATTTTCAGAATCGTCGAATGAAGGACAAAAAACTGCGACAACGCGTTTCGG</canonical>
            <polymorphic>TTTGTCCACTGATGAAATATTTGGCATAATATGACCTACATTTTATTAATTGACGAAATTTCGATATCTCTAATTGGAATCGAGATAATTGAGCTGCAAGATTAGATACTTGCTCAACTACTCCAGAATCTTTAAAGGCGCATACAGTACCTCAATTTTCAATTCTTACAGATGTAACAATTCCATCGTCAAACCGTTCATCAACTGCGACGACACCAAACGCATCAATGGCAACACTGTCATGGGCAATGGCATCGGAAGGGAAAAAGAAGAGACAACCATACAAAAAAGATCAAATTTCAAGACTGGAATATGAATATAAGATAAATCCATATCTGACGAATAAACGACGATCGGAATTGTCACTTCAATTGATGCTGGATGAGAAGCAGGTTAAAGTATGGTTCCAGGTTAGTTCGTTTTGGAGTTTAGGGGGAACGGAATCTAAGAATCTAAGAAYCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAAAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAACTTTTCTAACCCCCAGCATGTTTTACCAATTCTTTTCTATTTTTTCACCTTAATTACCCTCTAATTACCCCCAATTAATACACAAATTTTCAGAATCGTCGAATGAAGGACAAAAAACTGCGACAACGCGTTTCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGTTCGTTTTGGAGTTTAGG</pcr_primer_p1>
		<pcr_primer_p2>GGGGTTAGAAAAGTTAGATTCTT</pcr_primer_p2>
		<pcr_amplicon_size>466</pcr_amplicon_size>
		<canonical_amplicon>TTAGTTCGTTTTGGAGTTTAGGGGGAACGGAATCTAAGAATCTAAGAAYCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAAAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAACTTTTCTAACCCC</canonical_amplicon>
		<polymorphic_amplicon>TTAGTTCGTTTTGGAGTTTAGGGGGAACGGAATCTAAGAATCTAAGAAYCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAAAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAACTTTTCTAACCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35627</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>99091</contig_pos>
        <strand></strand>
        <context>AATCTAAGAA[C/T]CTAAGAATCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAA</left_flank>
        <right_flank>CTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATAATATGACCTACATTTTATTAATTGACGAAATTTCGATATCTCTAATTGGAATCGAGATAATTGAGCTGCAAGATTAGATACTTGCTCAACTACTCCAGAATCTTTAAAGGCGCATACAGTACCTCAATTTTCAATTCTTACAGATGTAACAATTCCATCGTCAAACCGTTCATCAACTGCGACGACACCAAACGCATCAATGGCAACACTGTCATGGGCAATGGCATCGGAAGGGAAAAAGAAGAGACAACCATACAAAAAAGATCAAATTTCAAGACTGGAATATGAATATAAGATAAATCCATATCTGACGAATAAACGACGATCGGAATTGTCACTTCAATTGATGCTGGATGAGAAGCAGGTTAAAGTATGGTTCCAGGTTAGTTCGTTTTGGAGTTTAGGGGGAACGGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAAAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAACTTTTCTAACCCCCAGCATGTTTTACCAATTCTTTTCTATTTTTTCACCTTAATTACCCTCTAATTACCCCCAATTAATACACAAATTTTCAGAATCGTCGAATGAAGGACAAAAAACTGCGACAACGCGTTTCGGGACCATTTCCACATGGAGAACTGA</canonical>
            <polymorphic>CATAATATGACCTACATTTTATTAATTGACGAAATTTCGATATCTCTAATTGGAATCGAGATAATTGAGCTGCAAGATTAGATACTTGCTCAACTACTCCAGAATCTTTAAAGGCGCATACAGTACCTCAATTTTCAATTCTTACAGATGTAACAATTCCATCGTCAAACCGTTCATCAACTGCGACGACACCAAACGCATCAATGGCAACACTGTCATGGGCAATGGCATCGGAAGGGAAAAAGAAGAGACAACCATACAAAAAAGATCAAATTTCAAGACTGGAATATGAATATAAGATAAATCCATATCTGACGAATAAACGACGATCGGAATTGTCACTTCAATTGATGCTGGATGAGAAGCAGGTTAAAGTATGGTTCCAGGTTAGTTCGTTTTGGAGTTTAGGGGGAACGGAATCTAAGAATCTAAGAAYCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAAAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAACTTTTCTAACCCCCAGCATGTTTTACCAATTCTTTTCTATTTTTTCACCTTAATTACCCTCTAATTACCCCCAATTAATACACAAATTTTCAGAATCGTCGAATGAAGGACAAAAAACTGCGACAACGCGTTTCGGGACCATTTCCACATGGAGAACTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGTTCGTTTTGGAGTTTAGG</pcr_primer_p1>
		<pcr_primer_p2>GGGGTTAGAAAAGTTAGATTCTT</pcr_primer_p2>
		<pcr_amplicon_size>466</pcr_amplicon_size>
		<canonical_amplicon>TTAGTTCGTTTTGGAGTTTAGGGGGAACGGAATCTAAGAATCTAAGAAYCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAAAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAACTTTTCTAACCCC</canonical_amplicon>
		<polymorphic_amplicon>TTAGTTCGTTTTGGAGTTTAGGGGGAACGGAATCTAAGAATCTAAGAAYCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAACCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAAAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAAGAATCTAACTTTTCTAACCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35628</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>130903</contig_pos>
        <strand></strand>
        <context>CATACACGAT[T/A]TGGCTGCCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATCCTTATTGCTCAGTTTAGACTTCTCAAGACTTATCAGCATACACGAT</left_flank>
        <right_flank>TGGCTGCCAGAACAAGATTATCGATAATAAACCATCCGGAGTTCCCGATT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAATTCGTTAAAAAATAGGAAGTTTGAACCGAGTTAAGGCACTCACTGTGTTTCGTTTTCCATTGCATTGGCGATGCATCATTATCTTTTCCTTATCATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTCCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGAGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGAGGTCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGGCGTTAAGCGTTGTACACCGTCACGGTAAAATGCATACTCTAGCTACAAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAAACTCTCGCTCTTTATAGCAAGAAACTGAAGACACGGGAACTCTCCAGTCATCCACAACCTCAAAAATGCATCCAAATCCTTATTGCTCAGTTTAGACTTCTCAAGACTTATCAGCATACACGATTTGGCTGCCAGAACAAGATTATCGATAATAAACCATCCGGAGTTCCCGATTGTGAGAAGTTTGGAATGAAATTTCAATGAATGCGAAATTAATTGTCCTTGATAACTTGGGAAATCGAAAGTGAGCGATTCAGCTTTCAAGTTATCCAATGTCCATTTTAAGTCCTCCTCATTTTCAAAACAAGCATATATATCTTCGATTTCTCCATTTTGTTTCTTAATGAGTCATCCAATGATCAATCGGAACACTTTCGAAGGAAAAGGTGTCCCGCAACGAAATACTTCAATGGACAATTGAAAATGTGGGATAGATAAAAGAGCAAGACAGCTCTTCCTAGAAACTCATCGTCCCAGAAAAAATACAGAACATCATTCGAGTCTCTTGCAATTTTGATTTCAAACTTTTGATTCTGATCAAGTTCGAAATGTCGAACTCCGAGAGTTTTGAAATTTCCAAGATTCGCAGAAGAGACCACTTTGAAATAGTACTTTCCAATGATAT</canonical>
            <polymorphic>TCAATTCGTTAAAAAATAGGAAGTTTGAACCGAGTTAAGGCACTCACTGTGTTTCGTTTTCCATTGCATTGGCGATGCATCATTATCTTTTCCTTATCATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTCCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGAGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGAGGTCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGGCGTTAAGCGTTGTACACCGTCACGGTAAAATGCATACTCTAGCTACAAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAAACTCTCGCTCTTTATAGCAAGAAACTGAAGACACGGGAACTCTCCAGTCATCCACAACCTCAAAAATGCATCCAAATCCTTATTGCTCAGTTTAGACTTCTCAAGACTTATCAGCATACACGATWTGGCTGCCAGAACAAGATTATCGATAATAAACCATCCGGAGTTCCCGATTGTGAGAAGTTTGGAATGAAATTTCAATGAATGCGAAATTAATTGTCCTTGATAACTTGGGAAATCGAAAGTGAGCGATTCAGCTTTCAAGTTATCCAATGTCCATTTTAAGTCCTCCTCATTTTCAAAACAAGCATATATATCTTCGATTTCTCCATTTTGTTTCTTAATGAGTCATCCAATGATCAATCGGAACACTTTCGAAGGAAAAGGTGTCCCGCAACGAAATACTTCAATGGACAATTGAAAATGTGGGATAGATAAAAGAGCAAGACAGCTCTTCCTAGAAACTCATCGTCCCAGAAAAAATACAGAACATCATTCGAGTCTCTTGCAATTTTGATTTCAAACTTTTGATTCTGATCAAGTTCGAAATGTCGAACTCCGAGAGTTTTGAAATTTCCAAGATTCGCAGAAGAGACCACTTTGAAATAGTACTTTCCAATGATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAACTCTCGCTCTTTATAGCA</pcr_primer_p1>
		<pcr_primer_p2>CTTTCGATTTCCCAAGTTATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAAAACTCTCGCTCTTTATAGCAAGAAACTGAAGACACGGGAACTCTCCAGTCATCCACAACCTCAAAAATGCATCCAAATCCTTATTGCTCAGTTTAGACTTCTCAAGACTTATCAGCATACACGATTTGGCTGCCAGAACAAGATTATCGATAATAAACCATCCGGAGTTCCCGATTGTGAGAAGTTTGGAATGAAATTTCAATGAATGCGAAATTAATTGTCCTTGATAACTTGGGAAATCGAAAG</canonical_amplicon>
		<polymorphic_amplicon>TAAAACTCTCGCTCTTTATAGCAAGAAACTGAAGACACGGGAACTCTCCAGTCATCCACAACCTCAAAAATGCATCCAAATCCTTATTGCTCAGTTTAGACTTCTCAAGACTTATCAGCATACACGATWTGGCTGCCAGAACAAGATTATCGATAATAAACCATCCGGAGTTCCCGATTGTGAGAAGTTTGGAATGAAATTTCAATGAATGCGAAATTAATTGTCCTTGATAACTTGGGAAATCGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35629</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>130967</contig_pos>
        <strand></strand>
        <context>AGAAGTTTGG[A/G]ATGAAATTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGATTATCGATAATAAACCATCCGGAGTTCCCGATTGTGAGAAGTTTGG</left_flank>
        <right_flank>ATGAAATTTCAATGAATGCGAAATTAATTGTCCTTGATAACTTGGGAAAT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCATTGGCGATGCATCATTATCTTTTCCTTATCATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTCCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGAGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGAGGTCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGGCGTTAAGCGTTGTACACCGTCACGGTAAAATGCATACTCTAGCTACAAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAAACTCTCGCTCTTTATAGCAAGAAACTGAAGACACGGGAACTCTCCAGTCATCCACAACCTCAAAAATGCATCCAAATCCTTATTGCTCAGTTTAGACTTCTCAAGACTTATCAGCATACACGATTTGGCTGCCAGAACAAGATTATCGATAATAAACCATCCGGAGTTCCCGATTGTGAGAAGTTTGGAATGAAATTTCAATGAATGCGAAATTAATTGTCCTTGATAACTTGGGAAATCGAAAGTGAGCGATTCAGCTTTCAAGTTATCCAATGTCCATTTTAAGTCCTCCTCATTTTCAAAACAAGCATATATATCTTCGATTTCTCCATTTTGTTTCTTAATGAGTCATCCAATGATCAATCGGAACACTTTCGAAGGAAAAGGTGTCCCGCAACGAAATACTTCAATGGACAATTGAAAATGTGGGATAGATAAAAGAGCAAGACAGCTCTTCCTAGAAACTCATCGTCCCAGAAAAAATACAGAACATCATTCGAGTCTCTTGCAATTTTGATTTCAAACTTTTGATTCTGATCAAGTTCGAAATGTCGAACTCCGAGAGTTTTGAAATTTCCAAGATTCGCAGAAGAGACCACTTTGAAATAGTACTTTCCAATGATATGAAATGTTCTGTTTCATAAAGAAAGTTTGAGTTTTGAAGTATTTGCTAGTTGAACGATTTTGAC</canonical>
            <polymorphic>TGCATTGGCGATGCATCATTATCTTTTCCTTATCATTAAAGGTGGGGGGACATGAAAAAAAATAATGTTCTCGAAATTCCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGGAGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGAGGTCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGGCGTTAAGCGTTGTACACCGTCACGGTAAAATGCATACTCTAGCTACAAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAAACTCTCGCTCTTTATAGCAAGAAACTGAAGACACGGGAACTCTCCAGTCATCCACAACCTCAAAAATGCATCCAAATCCTTATTGCTCAGTTTAGACTTCTCAAGACTTATCAGCATACACGATTTGGCTGCCAGAACAAGATTATCGATAATAAACCATCCGGAGTTCCCGATTGTGAGAAGTTTGGRATGAAATTTCAATGAATGCGAAATTAATTGTCCTTGATAACTTGGGAAATCGAAAGTGAGCGATTCAGCTTTCAAGTTATCCAATGTCCATTTTAAGTCCTCCTCATTTTCAAAACAAGCATATATATCTTCGATTTCTCCATTTTGTTTCTTAATGAGTCATCCAATGATCAATCGGAACACTTTCGAAGGAAAAGGTGTCCCGCAACGAAATACTTCAATGGACAATTGAAAATGTGGGATAGATAAAAGAGCAAGACAGCTCTTCCTAGAAACTCATCGTCCCAGAAAAAATACAGAACATCATTCGAGTCTCTTGCAATTTTGATTTCAAACTTTTGATTCTGATCAAGTTCGAAATGTCGAACTCCGAGAGTTTTGAAATTTCCAAGATTCGCAGAAGAGACCACTTTGAAATAGTACTTTCCAATGATATGAAATGTTCTGTTTCATAAAGAAAGTTTGAGTTTTGAAGTATTTGCTAGTTGAACGATTTTGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTCAAGACTTATCAGCATACA</pcr_primer_p1>
		<pcr_primer_p2>CATTAAGAAACAAAATGGAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTCTCAAGACTTATCAGCATACACGATTTGGCTGCCAGAACAAGATTATCGATAATAAACCATCCGGAGTTCCCGATTGTGAGAAGTTTGGAATGAAATTTCAATGAATGCGAAATTAATTGTCCTTGATAACTTGGGAAATCGAAAGTGAGCGATTCAGCTTTCAAGTTATCCAATGTCCATTTTAAGTCCTCCTCATTTTCAAAACAAGCATATATATCTTCGATTTCTCCATTTTGTTTCTTAATG</canonical_amplicon>
		<polymorphic_amplicon>TTCTCAAGACTTATCAGCATACACGATTTGGCTGCCAGAACAAGATTATCGATAATAAACCATCCGGAGTTCCCGATTGTGAGAAGTTTGGRATGAAATTTCAATGAATGCGAAATTAATTGTCCTTGATAACTTGGGAAATCGAAAGTGAGCGATTCAGCTTTCAAGTTATCCAATGTCCATTTTAAGTCCTCCTCATTTTCAAAACAAGCATATATATCTTCGATTTCTCCATTTTGTTTCTTAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35630</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>131127</contig_pos>
        <strand></strand>
        <context>TCTTAATGAG[T/C]CATCCAATGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCAAAACAAGCATATATATCTTCGATTTCTCCATTTTGTTTCTTAATGAG</left_flank>
        <right_flank>CATCCAATGATCAATCGGAACACTTTCGAAGGAAAAGGTGTCCCGCAACG</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAAAGAGAAAGAGGTCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGGCGTTAAGCGTTGTACACCGTCACGGTAAAATGCATACTCTAGCTACAAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAAACTCTCGCTCTTTATAGCAAGAAACTGAAGACACGGGAACTCTCCAGTCATCCACAACCTCAAAAATGCATCCAAATCCTTATTGCTCAGTTTAGACTTCTCAAGACTTATCAGCATACACGATTTGGCTGCCAGAACAAGATTATCGATAATAAACCATCCGGAGTTCCCGATTGTGAGAAGTTTGGAATGAAATTTCAATGAATGCGAAATTAATTGTCCTTGATAACTTGGGAAATCGAAAGTGAGCGATTCAGCTTTCAAGTTATCCAATGTCCATTTTAAGTCCTCCTCATTTTCAAAACAAGCATATATATCTTCGATTTCTCCATTTTGTTTCTTAATGAGTCATCCAATGATCAATCGGAACACTTTCGAAGGAAAAGGTGTCCCGCAACGAAATACTTCAATGGACAATTGAAAATGTGGGATAGATAAAAGAGCAAGACAGCTCTTCCTAGAAACTCATCGTCCCAGAAAAAATACAGAACATCATTCGAGTCTCTTGCAATTTTGATTTCAAACTTTTGATTCTGATCAAGTTCGAAATGTCGAACTCCGAGAGTTTTGAAATTTCCAAGATTCGCAGAAGAGACCACTTTGAAATAGTACTTTCCAATGATATGAAATGTTCTGTTTCATAAAGAAAGTTTGAGTTTTGAAGTATTTGCTAGTTGAACGATTTTGACCATATTCTTCGAGCATTGTGATATTTCGAATCTAAAGATTTGAAGGTTTTGATAAAGGGGAATTTAAAAATTTTTCTAAAACTTACAATTCAACTGGGTCCCAGAGCTTTGCAATGTCTCCAAGAACCACTGTCGGTAGAGCAAGAAGACGAAACCGGGG</canonical>
            <polymorphic>GCAAAGAGAAAGAGGTCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGGCGTTAAGCGTTGTACACCGTCACGGTAAAATGCATACTCTAGCTACAAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAAACTCTCGCTCTTTATAGCAAGAAACTGAAGACACGGGAACTCTCCAGTCATCCACAACCTCAAAAATGCATCCAAATCCTTATTGCTCAGTTTAGACTTCTCAAGACTTATCAGCATACACGATTTGGCTGCCAGAACAAGATTATCGATAATAAACCATCCGGAGTTCCCGATTGTGAGAAGTTTGGAATGAAATTTCAATGAATGCGAAATTAATTGTCCTTGATAACTTGGGAAATCGAAAGTGAGCGATTCAGCTTTCAAGTTATCCAATGTCCATTTTAAGTCCTCCTCATTTTCAAAACAAGCATATATATCTTCGATTTCTCCATTTTGTTTCTTAATGAGYCATCCAATGATCAATCGGAACACTTTCGAAGGAAAAGGTGTCCCGCAACGAAATACTTCAATGGACAATTGAAAATGTGGGATAGATAAAAGAGCAAGACAGCTCTTCCTAGAAACTCATCGTCCCAGAAAAAATACAGAACATCATTCGAGTCTCTTGCAATTTTGATTTCAAACTTTTGATTCTGATCAAGTTCGAAATGTCGAACTCCGAGAGTTTTGAAATTTCCAAGATTCGCAGAAGAGACCACTTTGAAATAGTACTTTCCAATGATATGAAATGTTCTGTTTCATAAAGAAAGTTTGAGTTTTGAAGTATTTGCTAGTTGAACGATTTTGACCATATTCTTCGAGCATTGTGATATTTCGAATCTAAAGATTTGAAGGTTTTGATAAAGGGGAATTTAAAAATTTTTCTAAAACTTACAATTCAACTGGGTCCCAGAGCTTTGCAATGTCTCCAAGAACCACTGTCGGTAGAGCAAGAAGACGAAACCGGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>402 153 136 132 95 51 31</canonical_bands>
                <polymorphic_bands>402 248 136 132 51 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCTTTCAAGTTATCCAATGTC</pcr_primer_p1>
		<pcr_primer_p2>GAGACTCGAATGATGTTCTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCTTTCAAGTTATCCAATGTCCATTTTAAGTCCTCCTCATTTTCAAAACAAGCATATATATCTTCGATTTCTCCATTTTGTTTCTTAATGAGTCATCCAATGATCAATCGGAACACTTTCGAAGGAAAAGGTGTCCCGCAACGAAATACTTCAATGGACAATTGAAAATGTGGGATAGATAAAAGAGCAAGACAGCTCTTCCTAGAAACTCATCGTCCCAGAAAAAATACAGAACATCATTCGAGTCTC</canonical_amplicon>
		<polymorphic_amplicon>AGCTTTCAAGTTATCCAATGTCCATTTTAAGTCCTCCTCATTTTCAAAACAAGCATATATATCTTCGATTTCTCCATTTTGTTTCTTAATGAGYCATCCAATGATCAATCGGAACACTTTCGAAGGAAAAGGTGTCCCGCAACGAAATACTTCAATGGACAATTGAAAATGTGGGATAGATAAAAGAGCAAGACAGCTCTTCCTAGAAACTCATCGTCCCAGAAAAAATACAGAACATCATTCGAGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35631</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>133751</contig_pos>
        <strand>+</strand>
        <context>AAAAAGATGG[A/C]AATTGYCCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCAAATTTCCAGAGAATTCCATCACTTGCAATCACCTGGAAAAAAGATGG</left_flank>
        <right_flank>AATTGCCCAGGACCTCTTTCGGAAACCAACGTTGTCGAAAGAGATCTTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTTCAGCTCGCAATTTCTGTGATGAAGAGCACACCCGAGGTGTACGGTATATCCATTTCCAGGAGATGAATTCTTTGAGGGACACGAGTGATGAGTTGGTGTTGAGATATGAACACGTTTGTGGACCATTGACACAGGTACGCGGACTACAAAATTTAATCTTCCATTTCCAGTACGTTTGTTAGTTTTGAAAAAACAATTTTTGAATTTTTCTTAAATTGAGCCGATCGGCGCCAGAAATTTGCAAATTTGCAATGCGCGGTGTTGTCTACGCCCTCCGCACCCTTAGCGTTTGAATGCGCGCGTAGCCGAGTGGATAGTTCAAGAGAATTTTGAGATGGAGGTCTGGTGTTCGATTCCTCTCGAGCTCAAAAACATTTTTGCTTCTTTTGTAGAACAGTTCCTTGGCAAGAATGGTTGTCATGTTTCATACTTAAGCGTTGAAACTCAAATTTCCAGAGAATTCCATCACTTGCAATCACCTGGAAAAAAGATGGCAATTGCCCAGGACCTCTTTCGGAAACCAACGTTGTCGAAAGAGATCTTATCAGCGGCAGTTACTATCTCTCTAGAAATATTCAAGTCACTGAAAATTCGATTCGTGAAGGACTTCAAGGATCAGTAGCAGTTATGATGACAGCAAAAGGAATGGGAAATCTGACTTGTAAAAGCTTGGACAATTCAATCTTCCGAATTTCGGACCATACTAAAACTGCGGAGAAAAAAAAGCATACGACTTCGAGATGTTCCTTGGAGGAAAATCCTTCATTCATGTTGATTAATTTTAATTTTTTTTCTATTTTTGGGATTTTTTCAATAAAAGTTTGCATTGGACATCTGGACACCTAGATTTTTGAATTCATACGTAAAATTCTTTAAATTTTTTTGACACGCTCCTATAATCCGCATACCACATTCTGGCCACAAATCCCAAGCGATCAATAAATCGATATCTCAAATCACTTCTCGATTTTTCCCATCTCGTCTACTCGATTCAA</canonical>
            <polymorphic>CCTTTCAGCTCGCAATTTCTGTGATGAAGAGCACACCCGAGGTGTACGGTATATCCATTTCCAGGAGATGAATTCTTTGAGGGACACGAGTGATGAGTTGGTGTTGAGATATGAACACGTTTGTGGACCATTGACACAGGTACGCGGACTACAAAATTTAATCTTCCATTTCCAGTACGTTTGTTAGTTTTGAAAAAACAATTTTTGAATTTTTCTTAAATTGAGCCGATCGGCGCCAGAAATTTGCAAATTTGCAATGCGCGGTGTTGTCTACGCCCTCCGCACCCTTAGCGTTTGAATGCGCGCGTAGCCGAGTGGATAGTTCAAGAGAATTTTGAGATGGAGGTCTGGTGTTCGATTCCTCTCGAGCTCAAAAACATTTTTGCTTCTTTTGTAGAACAGTTCCTTGGCAAGAATGGTTGTCATGTTTCATACTTAAGCGTTGAAACTCAAATTTCCAGAGAATTCCATCACTTGCAATCACCTGGAAAAAAGATGGMAATTGCCCAGGACCTCTTTCGGAAACCAACGTTGTCGAAAGAGATCTTATCAGCGGCAGTTACTATCTCTCTAGAAATATTCAAGTCACTGAAAATTCGATTCGTGAAGGACTTCAAGGATCAGTAGCAGTTATGATGACAGCAAAAGGAATGGGAAATCTGACTTGTAAAAGCTTGGACAATTCAATCTTCCGAATTTCGGACCATACTAAAACTGCGGAGAAAAAAAAGCATACGACTTCGAGATGTTCCTTGGAGGAAAATCCTTCATTCATGTTGATTAATTTTAATTTTTTTTCTATTTTTGGGATTTTTTCAATAAAAGTTTGCATTGGACATCTGGACACCTAGATTTTTGAATTCATACGTAAAATTCTTTAAATTTTTTTGACACGCTCCTATAATCCGCATACCACATTCTGGCCACAAATCCCAAGCGATCAATAAATCGATATCTCAAATCACTTCTCGATTTTTCCCATCTCGTCTACTCGATTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACTTAAGCGTTGAAACTCAAA</pcr_primer_p1>
		<pcr_primer_p2>CAAGCTTTTACAAGTCAGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATACTTAAGCGTTGAAACTCAAATTTCCAGAGAATTCCATCACTTGCAATCACCTGGAAAAAAGATGGCAATTGCCCAGGACCTCTTTCGGAAACCAACGTTGTCGAAAGAGATCTTATCAGCGGCAGTTACTATCTCTCTAGAAATATTCAAGTCACTGAAAATTCGATTCGTGAAGGACTTCAAGGATCAGTAGCAGTTATGATGACAGCAAAAGGAATGGGAAATCTGACTTGTAAAAGCTTG</canonical_amplicon>
		<polymorphic_amplicon>ATACTTAAGCGTTGAAACTCAAATTTCCAGAGAATTCCATCACTTGCAATCACCTGGAAAAAAGATGGMAATTGCCCAGGACCTCTTTCGGAAACCAACGTTGTCGAAAGAGATCTTATCAGCGGCAGTTACTATCTCTCTAGAAATATTCAAGTCACTGAAAATTCGATTCGTGAAGGACTTCAAGGATCAGTAGCAGTTATGATGACAGCAAAAGGAATGGGAAATCTGACTTGTAAAAGCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35632</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>133757</contig_pos>
        <strand>+</strand>
        <context>ATGGMAATTG[C/T]CCAGGACCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCAGAGAATTCCATCACTTGCAATCACCTGGAAAAAAGATGGCAATTG</left_flank>
        <right_flank>CCAGGACCTCTTTCGGAAACCAACGTTGTCGAAAGAGATCTTATCAGCGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTCGCAATTTCTGTGATGAAGAGCACACCCGAGGTGTACGGTATATCCATTTCCAGGAGATGAATTCTTTGAGGGACACGAGTGATGAGTTGGTGTTGAGATATGAACACGTTTGTGGACCATTGACACAGGTACGCGGACTACAAAATTTAATCTTCCATTTCCAGTACGTTTGTTAGTTTTGAAAAAACAATTTTTGAATTTTTCTTAAATTGAGCCGATCGGCGCCAGAAATTTGCAAATTTGCAATGCGCGGTGTTGTCTACGCCCTCCGCACCCTTAGCGTTTGAATGCGCGCGTAGCCGAGTGGATAGTTCAAGAGAATTTTGAGATGGAGGTCTGGTGTTCGATTCCTCTCGAGCTCAAAAACATTTTTGCTTCTTTTGTAGAACAGTTCCTTGGCAAGAATGGTTGTCATGTTTCATACTTAAGCGTTGAAACTCAAATTTCCAGAGAATTCCATCACTTGCAATCACCTGGAAAAAAGATGGCAATTGCCCAGGACCTCTTTCGGAAACCAACGTTGTCGAAAGAGATCTTATCAGCGGCAGTTACTATCTCTCTAGAAATATTCAAGTCACTGAAAATTCGATTCGTGAAGGACTTCAAGGATCAGTAGCAGTTATGATGACAGCAAAAGGAATGGGAAATCTGACTTGTAAAAGCTTGGACAATTCAATCTTCCGAATTTCGGACCATACTAAAACTGCGGAGAAAAAAAAGCATACGACTTCGAGATGTTCCTTGGAGGAAAATCCTTCATTCATGTTGATTAATTTTAATTTTTTTTCTATTTTTGGGATTTTTTCAATAAAAGTTTGCATTGGACATCTGGACACCTAGATTTTTGAATTCATACGTAAAATTCTTTAAATTTTTTTGACACGCTCCTATAATCCGCATACCACATTCTGGCCACAAATCCCAAGCGATCAATAAATCGATATCTCAAATCACTTCTCGATTTTTCCCATCTCGTCTACTCGATTCAATCAGCG</canonical>
            <polymorphic>AGCTCGCAATTTCTGTGATGAAGAGCACACCCGAGGTGTACGGTATATCCATTTCCAGGAGATGAATTCTTTGAGGGACACGAGTGATGAGTTGGTGTTGAGATATGAACACGTTTGTGGACCATTGACACAGGTACGCGGACTACAAAATTTAATCTTCCATTTCCAGTACGTTTGTTAGTTTTGAAAAAACAATTTTTGAATTTTTCTTAAATTGAGCCGATCGGCGCCAGAAATTTGCAAATTTGCAATGCGCGGTGTTGTCTACGCCCTCCGCACCCTTAGCGTTTGAATGCGCGCGTAGCCGAGTGGATAGTTCAAGAGAATTTTGAGATGGAGGTCTGGTGTTCGATTCCTCTCGAGCTCAAAAACATTTTTGCTTCTTTTGTAGAACAGTTCCTTGGCAAGAATGGTTGTCATGTTTCATACTTAAGCGTTGAAACTCAAATTTCCAGAGAATTCCATCACTTGCAATCACCTGGAAAAAAGATGGCAATTGYCCAGGACCTCTTTCGGAAACCAACGTTGTCGAAAGAGATCTTATCAGCGGCAGTTACTATCTCTCTAGAAATATTCAAGTCACTGAAAATTCGATTCGTGAAGGACTTCAAGGATCAGTAGCAGTTATGATGACAGCAAAAGGAATGGGAAATCTGACTTGTAAAAGCTTGGACAATTCAATCTTCCGAATTTCGGACCATACTAAAACTGCGGAGAAAAAAAAGCATACGACTTCGAGATGTTCCTTGGAGGAAAATCCTTCATTCATGTTGATTAATTTTAATTTTTTTTCTATTTTTGGGATTTTTTCAATAAAAGTTTGCATTGGACATCTGGACACCTAGATTTTTGAATTCATACGTAAAATTCTTTAAATTTTTTTGACACGCTCCTATAATCCGCATACCACATTCTGGCCACAAATCCCAAGCGATCAATAAATCGATATCTCAAATCACTTCTCGATTTTTCCCATCTCGTCTACTCGATTCAATCAGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>368 255 245 101 31</canonical_bands>
                <polymorphic_bands>368 346 255 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACTTAAGCGTTGAAACTCAAA</pcr_primer_p1>
		<pcr_primer_p2>CAAGCTTTTACAAGTCAGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATACTTAAGCGTTGAAACTCAAATTTCCAGAGAATTCCATCACTTGCAATCACCTGGAAAAAAGATGGCAATTGCCCAGGACCTCTTTCGGAAACCAACGTTGTCGAAAGAGATCTTATCAGCGGCAGTTACTATCTCTCTAGAAATATTCAAGTCACTGAAAATTCGATTCGTGAAGGACTTCAAGGATCAGTAGCAGTTATGATGACAGCAAAAGGAATGGGAAATCTGACTTGTAAAAGCTTG</canonical_amplicon>
		<polymorphic_amplicon>ATACTTAAGCGTTGAAACTCAAATTTCCAGAGAATTCCATCACTTGCAATCACCTGGAAAAAAGATGGCAATTGYCCAGGACCTCTTTCGGAAACCAACGTTGTCGAAAGAGATCTTATCAGCGGCAGTTACTATCTCTCTAGAAATATTCAAGTCACTGAAAATTCGATTCGTGAAGGACTTCAAGGATCAGTAGCAGTTATGATGACAGCAAAAGGAATGGGAAATCTGACTTGTAAAAGCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35633</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>133804</contig_pos>
        <strand>+</strand>
        <context>GATCTTATCA[G/T]CGGCAGTTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGCCCAGGACCTCTTTCGGAAACCAACGTTGTCGAAAGAGATCTTATCA</left_flank>
        <right_flank>CGGCAGTTACTATCTCTCTAGAAATATTCAAGTCACTGAAAATTCGATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCATTTCCAGGAGATGAATTCTTTGAGGGACACGAGTGATGAGTTGGTGTTGAGATATGAACACGTTTGTGGACCATTGACACAGGTACGCGGACTACAAAATTTAATCTTCCATTTCCAGTACGTTTGTTAGTTTTGAAAAAACAATTTTTGAATTTTTCTTAAATTGAGCCGATCGGCGCCAGAAATTTGCAAATTTGCAATGCGCGGTGTTGTCTACGCCCTCCGCACCCTTAGCGTTTGAATGCGCGCGTAGCCGAGTGGATAGTTCAAGAGAATTTTGAGATGGAGGTCTGGTGTTCGATTCCTCTCGAGCTCAAAAACATTTTTGCTTCTTTTGTAGAACAGTTCCTTGGCAAGAATGGTTGTCATGTTTCATACTTAAGCGTTGAAACTCAAATTTCCAGAGAATTCCATCACTTGCAATCACCTGGAAAAAAGATGGCAATTGCCCAGGACCTCTTTCGGAAACCAACGTTGTCGAAAGAGATCTTATCAGCGGCAGTTACTATCTCTCTAGAAATATTCAAGTCACTGAAAATTCGATTCGTGAAGGACTTCAAGGATCAGTAGCAGTTATGATGACAGCAAAAGGAATGGGAAATCTGACTTGTAAAAGCTTGGACAATTCAATCTTCCGAATTTCGGACCATACTAAAACTGCGGAGAAAAAAAAGCATACGACTTCGAGATGTTCCTTGGAGGAAAATCCTTCATTCATGTTGATTAATTTTAATTTTTTTTCTATTTTTGGGATTTTTTCAATAAAAGTTTGCATTGGACATCTGGACACCTAGATTTTTGAATTCATACGTAAAATTCTTTAAATTTTTTTGACACGCTCCTATAATCCGCATACCACATTCTGGCCACAAATCCCAAGCGATCAATAAATCGATATCTCAAATCACTTCTCGATTTTTCCCATCTCGTCTACTCGATTCAATCAGCGAGCACTCACTCCGCTTCAATATCAAACATGACAACCGCTCTTGCCAA</canonical>
            <polymorphic>TCCATTTCCAGGAGATGAATTCTTTGAGGGACACGAGTGATGAGTTGGTGTTGAGATATGAACACGTTTGTGGACCATTGACACAGGTACGCGGACTACAAAATTTAATCTTCCATTTCCAGTACGTTTGTTAGTTTTGAAAAAACAATTTTTGAATTTTTCTTAAATTGAGCCGATCGGCGCCAGAAATTTGCAAATTTGCAATGCGCGGTGTTGTCTACGCCCTCCGCACCCTTAGCGTTTGAATGCGCGCGTAGCCGAGTGGATAGTTCAAGAGAATTTTGAGATGGAGGTCTGGTGTTCGATTCCTCTCGAGCTCAAAAACATTTTTGCTTCTTTTGTAGAACAGTTCCTTGGCAAGAATGGTTGTCATGTTTCATACTTAAGCGTTGAAACTCAAATTTCCAGAGAATTCCATCACTTGCAATCACCTGGAAAAAAGATGGCAATTGCCCAGGACCTCTTTCGGAAACCAACGTTGTCGAAAGAGATCTTATCAKCGGCAGTTACTATCTCTCTAGAAATATTCAAGTCACTGAAAATTCGATTCGTGAAGGACTTCAAGGATCAGTAGCAGTTATGATGACAGCAAAAGGAATGGGAAATCTGACTTGTAAAAGCTTGGACAATTCAATCTTCCGAATTTCGGACCATACTAAAACTGCGGAGAAAAAAAAGCATACGACTTCGAGATGTTCCTTGGAGGAAAATCCTTCATTCATGTTGATTAATTTTAATTTTTTTTCTATTTTTGGGATTTTTTCAATAAAAGTTTGCATTGGACATCTGGACACCTAGATTTTTGAATTCATACGTAAAATTCTTTAAATTTTTTTGACACGCTCCTATAATCCGCATACCACATTCTGGCCACAAATCCCAAGCGATCAATAAATCGATATCTCAAATCACTTCTCGATTTTTCCCATCTCGTCTACTCGATTCAATCAGCGAGCACTCACTCCGCTTCAATATCAAACATGACAACCGCTCTTGCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACTTAAGCGTTGAAACTCAAA</pcr_primer_p1>
		<pcr_primer_p2>CAAGCTTTTACAAGTCAGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATACTTAAGCGTTGAAACTCAAATTTCCAGAGAATTCCATCACTTGCAATCACCTGGAAAAAAGATGGCAATTGCCCAGGACCTCTTTCGGAAACCAACGTTGTCGAAAGAGATCTTATCAGCGGCAGTTACTATCTCTCTAGAAATATTCAAGTCACTGAAAATTCGATTCGTGAAGGACTTCAAGGATCAGTAGCAGTTATGATGACAGCAAAAGGAATGGGAAATCTGACTTGTAAAAGCTTG</canonical_amplicon>
		<polymorphic_amplicon>ATACTTAAGCGTTGAAACTCAAATTTCCAGAGAATTCCATCACTTGCAATCACCTGGAAAAAAGATGGCAATTGCCCAGGACCTCTTTCGGAAACCAACGTTGTCGAAAGAGATCTTATCAKCGGCAGTTACTATCTCTCTAGAAATATTCAAGTCACTGAAAATTCGATTCGTGAAGGACTTCAAGGATCAGTAGCAGTTATGATGACAGCAAAAGGAATGGGAAATCTGACTTGTAAAAGCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35634</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>133851</contig_pos>
        <strand>+</strand>
        <context>TGAAAATTCG[A/G]TTCGTGAAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAGCGGCAGTTACTATCTCTCTAGAAATATTCAAGTCACTGAAAATTCG</left_flank>
        <right_flank>TTCGTGAAGGACTTCAAGGATCAGTAGCAGTTATGATGACAGCAAAAGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGTTGAGATATGAACACGTTTGTGGACCATTGACACAGGTACGCGGACTACAAAATTTAATCTTCCATTTCCAGTACGTTTGTTAGTTTTGAAAAAACAATTTTTGAATTTTTCTTAAATTGAGCCGATCGGCGCCAGAAATTTGCAAATTTGCAATGCGCGGTGTTGTCTACGCCCTCCGCACCCTTAGCGTTTGAATGCGCGCGTAGCCGAGTGGATAGTTCAAGAGAATTTTGAGATGGAGGTCTGGTGTTCGATTCCTCTCGAGCTCAAAAACATTTTTGCTTCTTTTGTAGAACAGTTCCTTGGCAAGAATGGTTGTCATGTTTCATACTTAAGCGTTGAAACTCAAATTTCCAGAGAATTCCATCACTTGCAATCACCTGGAAAAAAGATGGCAATTGCCCAGGACCTCTTTCGGAAACCAACGTTGTCGAAAGAGATCTTATCAGCGGCAGTTACTATCTCTCTAGAAATATTCAAGTCACTGAAAATTCGATTCGTGAAGGACTTCAAGGATCAGTAGCAGTTATGATGACAGCAAAAGGAATGGGAAATCTGACTTGTAAAAGCTTGGACAATTCAATCTTCCGAATTTCGGACCATACTAAAACTGCGGAGAAAAAAAAGCATACGACTTCGAGATGTTCCTTGGAGGAAAATCCTTCATTCATGTTGATTAATTTTAATTTTTTTTCTATTTTTGGGATTTTTTCAATAAAAGTTTGCATTGGACATCTGGACACCTAGATTTTTGAATTCATACGTAAAATTCTTTAAATTTTTTTGACACGCTCCTATAATCCGCATACCACATTCTGGCCACAAATCCCAAGCGATCAATAAATCGATATCTCAAATCACTTCTCGATTTTTCCCATCTCGTCTACTCGATTCAATCAGCGAGCACTCACTCCGCTTCAATATCAAACATGACAACCGCTCTTGCCAAAGTAAAAAAGAAGCAAAAAGACTTTTGAGCCCAGAGAGGAATCGAAC</canonical>
            <polymorphic>GTGTTGAGATATGAACACGTTTGTGGACCATTGACACAGGTACGCGGACTACAAAATTTAATCTTCCATTTCCAGTACGTTTGTTAGTTTTGAAAAAACAATTTTTGAATTTTTCTTAAATTGAGCCGATCGGCGCCAGAAATTTGCAAATTTGCAATGCGCGGTGTTGTCTACGCCCTCCGCACCCTTAGCGTTTGAATGCGCGCGTAGCCGAGTGGATAGTTCAAGAGAATTTTGAGATGGAGGTCTGGTGTTCGATTCCTCTCGAGCTCAAAAACATTTTTGCTTCTTTTGTAGAACAGTTCCTTGGCAAGAATGGTTGTCATGTTTCATACTTAAGCGTTGAAACTCAAATTTCCAGAGAATTCCATCACTTGCAATCACCTGGAAAAAAGATGGCAATTGCCCAGGACCTCTTTCGGAAACCAACGTTGTCGAAAGAGATCTTATCAGCGGCAGTTACTATCTCTCTAGAAATATTCAAGTCACTGAAAATTCGRTTCGTGAAGGACTTCAAGGATCAGTAGCAGTTATGATGACAGCAAAAGGAATGGGAAATCTGACTTGTAAAAGCTTGGACAATTCAATCTTCCGAATTTCGGACCATACTAAAACTGCGGAGAAAAAAAAGCATACGACTTCGAGATGTTCCTTGGAGGAAAATCCTTCATTCATGTTGATTAATTTTAATTTTTTTTCTATTTTTGGGATTTTTTCAATAAAAGTTTGCATTGGACATCTGGACACCTAGATTTTTGAATTCATACGTAAAATTCTTTAAATTTTTTTGACACGCTCCTATAATCCGCATACCACATTCTGGCCACAAATCCCAAGCGATCAATAAATCGATATCTCAAATCACTTCTCGATTTTTCCCATCTCGTCTACTCGATTCAATCAGCGAGCACTCACTCCGCTTCAATATCAAACATGACAACCGCTCTTGCCAAAGTAAAAAAGAAGCAAAAAGACTTTTGAGCCCAGAGAGGAATCGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>256 208 170 144 103 62 23 20 10 4</canonical_bands>
                <polymorphic_bands>256 208 206 170 103 23 20 10 4</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>395 257 242 98 8</canonical_bands>
                <polymorphic_bands>637 257 98 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>395 257 242 98 8</canonical_bands>
                <polymorphic_bands>637 257 98 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACTTAAGCGTTGAAACTCAAA</pcr_primer_p1>
		<pcr_primer_p2>CAAGCTTTTACAAGTCAGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATACTTAAGCGTTGAAACTCAAATTTCCAGAGAATTCCATCACTTGCAATCACCTGGAAAAAAGATGGCAATTGCCCAGGACCTCTTTCGGAAACCAACGTTGTCGAAAGAGATCTTATCAGCGGCAGTTACTATCTCTCTAGAAATATTCAAGTCACTGAAAATTCGATTCGTGAAGGACTTCAAGGATCAGTAGCAGTTATGATGACAGCAAAAGGAATGGGAAATCTGACTTGTAAAAGCTTG</canonical_amplicon>
		<polymorphic_amplicon>ATACTTAAGCGTTGAAACTCAAATTTCCAGAGAATTCCATCACTTGCAATCACCTGGAAAAAAGATGGCAATTGCCCAGGACCTCTTTCGGAAACCAACGTTGTCGAAAGAGATCTTATCAGCGGCAGTTACTATCTCTCTAGAAATATTCAAGTCACTGAAAATTCGRTTCGTGAAGGACTTCAAGGATCAGTAGCAGTTATGATGACAGCAAAAGGAATGGGAAATCTGACTTGTAAAAGCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35635</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>133898</contig_pos>
        <strand>+</strand>
        <context>TGACAGCAAA[A/T]GGAATGGGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGATTCGTGAAGGACTTCAAGGATCAGTAGCAGTTATGATGACAGCAAA</left_flank>
        <right_flank>GGAATGGGAAATCTGACTTGTAAAAGCTTGGACAATTCAATCTTCCGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTACAAAATTTAATCTTCCATTTCCAGTACGTTTGTTAGTTTTGAAAAAACAATTTTTGAATTTTTCTTAAATTGAGCCGATCGGCGCCAGAAATTTGCAAATTTGCAATGCGCGGTGTTGTCTACGCCCTCCGCACCCTTAGCGTTTGAATGCGCGCGTAGCCGAGTGGATAGTTCAAGAGAATTTTGAGATGGAGGTCTGGTGTTCGATTCCTCTCGAGCTCAAAAACATTTTTGCTTCTTTTGTAGAACAGTTCCTTGGCAAGAATGGTTGTCATGTTTCATACTTAAGCGTTGAAACTCAAATTTCCAGAGAATTCCATCACTTGCAATCACCTGGAAAAAAGATGGCAATTGCCCAGGACCTCTTTCGGAAACCAACGTTGTCGAAAGAGATCTTATCAGCGGCAGTTACTATCTCTCTAGAAATATTCAAGTCACTGAAAATTCGATTCGTGAAGGACTTCAAGGATCAGTAGCAGTTATGATGACAGCAAAAGGAATGGGAAATCTGACTTGTAAAAGCTTGGACAATTCAATCTTCCGAATTTCGGACCATACTAAAACTGCGGAGAAAAAAAAGCATACGACTTCGAGATGTTCCTTGGAGGAAAATCCTTCATTCATGTTGATTAATTTTAATTTTTTTTCTATTTTTGGGATTTTTTCAATAAAAGTTTGCATTGGACATCTGGACACCTAGATTTTTGAATTCATACGTAAAATTCTTTAAATTTTTTTGACACGCTCCTATAATCCGCATACCACATTCTGGCCACAAATCCCAAGCGATCAATAAATCGATATCTCAAATCACTTCTCGATTTTTCCCATCTCGTCTACTCGATTCAATCAGCGAGCACTCACTCCGCTTCAATATCAAACATGACAACCGCTCTTGCCAAAGTAAAAAAGAAGCAAAAAGACTTTTGAGCCCAGAGAGGAATCGAACTCCGGACCTCCGGCTCAAAAGTCTAGGTTGCTAGCCACTCGGCCACG</canonical>
            <polymorphic>ACTACAAAATTTAATCTTCCATTTCCAGTACGTTTGTTAGTTTTGAAAAAACAATTTTTGAATTTTTCTTAAATTGAGCCGATCGGCGCCAGAAATTTGCAAATTTGCAATGCGCGGTGTTGTCTACGCCCTCCGCACCCTTAGCGTTTGAATGCGCGCGTAGCCGAGTGGATAGTTCAAGAGAATTTTGAGATGGAGGTCTGGTGTTCGATTCCTCTCGAGCTCAAAAACATTTTTGCTTCTTTTGTAGAACAGTTCCTTGGCAAGAATGGTTGTCATGTTTCATACTTAAGCGTTGAAACTCAAATTTCCAGAGAATTCCATCACTTGCAATCACCTGGAAAAAAGATGGCAATTGCCCAGGACCTCTTTCGGAAACCAACGTTGTCGAAAGAGATCTTATCAGCGGCAGTTACTATCTCTCTAGAAATATTCAAGTCACTGAAAATTCGATTCGTGAAGGACTTCAAGGATCAGTAGCAGTTATGATGACAGCAAAWGGAATGGGAAATCTGACTTGTAAAAGCTTGGACAATTCAATCTTCCGAATTTCGGACCATACTAAAACTGCGGAGAAAAAAAAGCATACGACTTCGAGATGTTCCTTGGAGGAAAATCCTTCATTCATGTTGATTAATTTTAATTTTTTTTCTATTTTTGGGATTTTTTCAATAAAAGTTTGCATTGGACATCTGGACACCTAGATTTTTGAATTCATACGTAAAATTCTTTAAATTTTTTTGACACGCTCCTATAATCCGCATACCACATTCTGGCCACAAATCCCAAGCGATCAATAAATCGATATCTCAAATCACTTCTCGATTTTTCCCATCTCGTCTACTCGATTCAATCAGCGAGCACTCACTCCGCTTCAATATCAAACATGACAACCGCTCTTGCCAAAGTAAAAAAGAAGCAAAAAGACTTTTGAGCCCAGAGAGGAATCGAACTCCGGACCTCCGGCTCAAAAGTCTAGGTTGCTAGCCACTCGGCCACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCAGAGAATTCCATCACTT</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCGGAAGATTGAATTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTCCAGAGAATTCCATCACTTGCAATCACCTGGAAAAAAGATGGCAATTGCCCAGGACCTCTTTCGGAAACCAACGTTGTCGAAAGAGATCTTATCAGCGGCAGTTACTATCTCTCTAGAAATATTCAAGTCACTGAAAATTCGATTCGTGAAGGACTTCAAGGATCAGTAGCAGTTATGATGACAGCAAAAGGAATGGGAAATCTGACTTGTAAAAGCTTGGACAATTCAATCTTCCGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>TTCCAGAGAATTCCATCACTTGCAATCACCTGGAAAAAAGATGGCAATTGCCCAGGACCTCTTTCGGAAACCAACGTTGTCGAAAGAGATCTTATCAGCGGCAGTTACTATCTCTCTAGAAATATTCAAGTCACTGAAAATTCGATTCGTGAAGGACTTCAAGGATCAGTAGCAGTTATGATGACAGCAAAWGGAATGGGAAATCTGACTTGTAAAAGCTTGGACAATTCAATCTTCCGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35636</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>133960</contig_pos>
        <strand>+</strand>
        <context>TCGGACCATA[C/T]TAAAACTGYG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTGACTTGTAAAAGCTTGGACAATTCAATCTTCCGAATTTCGGACCATA</left_flank>
        <right_flank>TAAAACTGCGGAGAAAAAAAAGCATACGACTTCGAGATGTTCCTTGGAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCTTAAATTGAGCCGATCGGCGCCAGAAATTTGCAAATTTGCAATGCGCGGTGTTGTCTACGCCCTCCGCACCCTTAGCGTTTGAATGCGCGCGTAGCCGAGTGGATAGTTCAAGAGAATTTTGAGATGGAGGTCTGGTGTTCGATTCCTCTCGAGCTCAAAAACATTTTTGCTTCTTTTGTAGAACAGTTCCTTGGCAAGAATGGTTGTCATGTTTCATACTTAAGCGTTGAAACTCAAATTTCCAGAGAATTCCATCACTTGCAATCACCTGGAAAAAAGATGGCAATTGCCCAGGACCTCTTTCGGAAACCAACGTTGTCGAAAGAGATCTTATCAGCGGCAGTTACTATCTCTCTAGAAATATTCAAGTCACTGAAAATTCGATTCGTGAAGGACTTCAAGGATCAGTAGCAGTTATGATGACAGCAAAAGGAATGGGAAATCTGACTTGTAAAAGCTTGGACAATTCAATCTTCCGAATTTCGGACCATACTAAAACTGCGGAGAAAAAAAAGCATACGACTTCGAGATGTTCCTTGGAGGAAAATCCTTCATTCATGTTGATTAATTTTAATTTTTTTTCTATTTTTGGGATTTTTTCAATAAAAGTTTGCATTGGACATCTGGACACCTAGATTTTTGAATTCATACGTAAAATTCTTTAAATTTTTTTGACACGCTCCTATAATCCGCATACCACATTCTGGCCACAAATCCCAAGCGATCAATAAATCGATATCTCAAATCACTTCTCGATTTTTCCCATCTCGTCTACTCGATTCAATCAGCGAGCACTCACTCCGCTTCAATATCAAACATGACAACCGCTCTTGCCAAAGTAAAAAAGAAGCAAAAAGACTTTTGAGCCCAGAGAGGAATCGAACTCCGGACCTCCGGCTCAAAAGTCTAGGTTGCTAGCCACTCGGCCACGCGCGCATTTGAAGGAATAGGTGCGGAGGGCATAGACACCGCCGCGCCTTCTCGCAATTTTCA</canonical>
            <polymorphic>TTTTTCTTAAATTGAGCCGATCGGCGCCAGAAATTTGCAAATTTGCAATGCGCGGTGTTGTCTACGCCCTCCGCACCCTTAGCGTTTGAATGCGCGCGTAGCCGAGTGGATAGTTCAAGAGAATTTTGAGATGGAGGTCTGGTGTTCGATTCCTCTCGAGCTCAAAAACATTTTTGCTTCTTTTGTAGAACAGTTCCTTGGCAAGAATGGTTGTCATGTTTCATACTTAAGCGTTGAAACTCAAATTTCCAGAGAATTCCATCACTTGCAATCACCTGGAAAAAAGATGGCAATTGCCCAGGACCTCTTTCGGAAACCAACGTTGTCGAAAGAGATCTTATCAGCGGCAGTTACTATCTCTCTAGAAATATTCAAGTCACTGAAAATTCGATTCGTGAAGGACTTCAAGGATCAGTAGCAGTTATGATGACAGCAAAAGGAATGGGAAATCTGACTTGTAAAAGCTTGGACAATTCAATCTTCCGAATTTCGGACCATAYTAAAACTGCGGAGAAAAAAAAGCATACGACTTCGAGATGTTCCTTGGAGGAAAATCCTTCATTCATGTTGATTAATTTTAATTTTTTTTCTATTTTTGGGATTTTTTCAATAAAAGTTTGCATTGGACATCTGGACACCTAGATTTTTGAATTCATACGTAAAATTCTTTAAATTTTTTTGACACGCTCCTATAATCCGCATACCACATTCTGGCCACAAATCCCAAGCGATCAATAAATCGATATCTCAAATCACTTCTCGATTTTTCCCATCTCGTCTACTCGATTCAATCAGCGAGCACTCACTCCGCTTCAATATCAAACATGACAACCGCTCTTGCCAAAGTAAAAAAGAAGCAAAAAGACTTTTGAGCCCAGAGAGGAATCGAACTCCGGACCTCCGGCTCAAAAGTCTAGGTTGCTAGCCACTCGGCCACGCGCGCATTTGAAGGAATAGGTGCGGAGGGCATAGACACCGCCGCGCCTTCTCGCAATTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCAGTAGCAGTTATGATGACA</pcr_primer_p1>
		<pcr_primer_p2>ACGTATGAATTCAAAAATCTAGG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GATCAGTAGCAGTTATGATGACAGCAAAAGGAATGGGAAATCTGACTTGTAAAAGCTTGGACAATTCAATCTTCCGAATTTCGGACCATACTAAAACTGCGGAGAAAAAAAAGCATACGACTTCGAGATGTTCCTTGGAGGAAAATCCTTCATTCATGTTGATTAATTTTAATTTTTTTTCTATTTTTGGGATTTTTTCAATAAAAGTTTGCATTGGACATCTGGACACCTAGATTTTTGAATTCATACGT</canonical_amplicon>
		<polymorphic_amplicon>GATCAGTAGCAGTTATGATGACAGCAAAAGGAATGGGAAATCTGACTTGTAAAAGCTTGGACAATTCAATCTTCCGAATTTCGGACCATAYTAAAACTGCGGAGAAAAAAAAGCATACGACTTCGAGATGTTCCTTGGAGGAAAATCCTTCATTCATGTTGATTAATTTTAATTTTTTTTCTATTTTTGGGATTTTTTCAATAAAAGTTTGCATTGGACATCTGGACACCTAGATTTTTGAATTCATACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35637</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>133969</contig_pos>
        <strand>+</strand>
        <context>AYTAAAACTG[C/T]GGAGAAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAAGCTTGGACAATTCAATCTTCCGAATTTCGGACCATACTAAAACTG</left_flank>
        <right_flank>GGAGAAAAAAAAGCATACGACTTCGAGATGTTCCTTGGAGGAAAATCCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGAGCCGATCGGCGCCAGAAATTTGCAAATTTGCAATGCGCGGTGTTGTCTACGCCCTCCGCACCCTTAGCGTTTGAATGCGCGCGTAGCCGAGTGGATAGTTCAAGAGAATTTTGAGATGGAGGTCTGGTGTTCGATTCCTCTCGAGCTCAAAAACATTTTTGCTTCTTTTGTAGAACAGTTCCTTGGCAAGAATGGTTGTCATGTTTCATACTTAAGCGTTGAAACTCAAATTTCCAGAGAATTCCATCACTTGCAATCACCTGGAAAAAAGATGGCAATTGCCCAGGACCTCTTTCGGAAACCAACGTTGTCGAAAGAGATCTTATCAGCGGCAGTTACTATCTCTCTAGAAATATTCAAGTCACTGAAAATTCGATTCGTGAAGGACTTCAAGGATCAGTAGCAGTTATGATGACAGCAAAAGGAATGGGAAATCTGACTTGTAAAAGCTTGGACAATTCAATCTTCCGAATTTCGGACCATACTAAAACTGCGGAGAAAAAAAAGCATACGACTTCGAGATGTTCCTTGGAGGAAAATCCTTCATTCATGTTGATTAATTTTAATTTTTTTTCTATTTTTGGGATTTTTTCAATAAAAGTTTGCATTGGACATCTGGACACCTAGATTTTTGAATTCATACGTAAAATTCTTTAAATTTTTTTGACACGCTCCTATAATCCGCATACCACATTCTGGCCACAAATCCCAAGCGATCAATAAATCGATATCTCAAATCACTTCTCGATTTTTCCCATCTCGTCTACTCGATTCAATCAGCGAGCACTCACTCCGCTTCAATATCAAACATGACAACCGCTCTTGCCAAAGTAAAAAAGAAGCAAAAAGACTTTTGAGCCCAGAGAGGAATCGAACTCCGGACCTCCGGCTCAAAAGTCTAGGTTGCTAGCCACTCGGCCACGCGCGCATTTGAAGGAATAGGTGCGGAGGGCATAGACACCGCCGCGCCTTCTCGCAATTTTCAGAGTAGCGC</canonical>
            <polymorphic>AATTGAGCCGATCGGCGCCAGAAATTTGCAAATTTGCAATGCGCGGTGTTGTCTACGCCCTCCGCACCCTTAGCGTTTGAATGCGCGCGTAGCCGAGTGGATAGTTCAAGAGAATTTTGAGATGGAGGTCTGGTGTTCGATTCCTCTCGAGCTCAAAAACATTTTTGCTTCTTTTGTAGAACAGTTCCTTGGCAAGAATGGTTGTCATGTTTCATACTTAAGCGTTGAAACTCAAATTTCCAGAGAATTCCATCACTTGCAATCACCTGGAAAAAAGATGGCAATTGCCCAGGACCTCTTTCGGAAACCAACGTTGTCGAAAGAGATCTTATCAGCGGCAGTTACTATCTCTCTAGAAATATTCAAGTCACTGAAAATTCGATTCGTGAAGGACTTCAAGGATCAGTAGCAGTTATGATGACAGCAAAAGGAATGGGAAATCTGACTTGTAAAAGCTTGGACAATTCAATCTTCCGAATTTCGGACCATACTAAAACTGYGGAGAAAAAAAAGCATACGACTTCGAGATGTTCCTTGGAGGAAAATCCTTCATTCATGTTGATTAATTTTAATTTTTTTTCTATTTTTGGGATTTTTTCAATAAAAGTTTGCATTGGACATCTGGACACCTAGATTTTTGAATTCATACGTAAAATTCTTTAAATTTTTTTGACACGCTCCTATAATCCGCATACCACATTCTGGCCACAAATCCCAAGCGATCAATAAATCGATATCTCAAATCACTTCTCGATTTTTCCCATCTCGTCTACTCGATTCAATCAGCGAGCACTCACTCCGCTTCAATATCAAACATGACAACCGCTCTTGCCAAAGTAAAAAAGAAGCAAAAAGACTTTTGAGCCCAGAGAGGAATCGAACTCCGGACCTCCGGCTCAAAAGTCTAGGTTGCTAGCCACTCGGCCACGCGCGCATTTGAAGGAATAGGTGCGGAGGGCATAGACACCGCCGCGCCTTCTCGCAATTTTCAGAGTAGCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCAGTAGCAGTTATGATGACA</pcr_primer_p1>
		<pcr_primer_p2>ACGTATGAATTCAAAAATCTAGG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GATCAGTAGCAGTTATGATGACAGCAAAAGGAATGGGAAATCTGACTTGTAAAAGCTTGGACAATTCAATCTTCCGAATTTCGGACCATACTAAAACTGCGGAGAAAAAAAAGCATACGACTTCGAGATGTTCCTTGGAGGAAAATCCTTCATTCATGTTGATTAATTTTAATTTTTTTTCTATTTTTGGGATTTTTTCAATAAAAGTTTGCATTGGACATCTGGACACCTAGATTTTTGAATTCATACGT</canonical_amplicon>
		<polymorphic_amplicon>GATCAGTAGCAGTTATGATGACAGCAAAAGGAATGGGAAATCTGACTTGTAAAAGCTTGGACAATTCAATCTTCCGAATTTCGGACCATACTAAAACTGYGGAGAAAAAAAAGCATACGACTTCGAGATGTTCCTTGGAGGAAAATCCTTCATTCATGTTGATTAATTTTAATTTTTTTTCTATTTTTGGGATTTTTTCAATAAAAGTTTGCATTGGACATCTGGACACCTAGATTTTTGAATTCATACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35638</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>150639</contig_pos>
        <strand></strand>
        <context>ATTTTCAGAA[T/A]TTTCTTGAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GTCAGTCTAGTTCTGGAGATTCTTTTTCTGAAATTTCAAAATTTTCAGAA</left_flank>
        <right_flank>TTTCTTGAACTTAAATTTTCCAGACGTATCTCGAATTTTTCAATTTTTGG</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGTCCGGATGTATGTAGCGCACCTTGTCACCCGTTCAAAGTTAACCGTTCAAGCTGAAACCTGGACAGATAGATCAGAATTGTGTCTTAGTTGATGCCCGAACTTTTGGTTTTTCGAAATTTTGATTTTGAAGTCTTCTGGAGACGTTCCTTGGTTTCACCCACACTAAAGAGTGGTGGGCGATGGTGGAGGGCGACCGGAGGCCAGGAGGTTAAGCCCCGAAGGTGCGTAAACCGACTGGTATAAGATCAAAAAATCAATGGGATCTCTGAAAACCCCTAGAAGTTTTTCTAGAAATTTCGAAATCTTGATATTTTGCATTCGAAAAAAATAGATTGAAATCTTCTGGAAAAAATCGTTATTCTTTGTGTTTTGGAATTGAGGAGAAAACATCGGAATAGATCGTTCCGATTTGAGGGTGTGTGTGTGTAGATTGGACAAGGAAATGTCAGTCTAGTTCTGGAGATTCTTTTTCTGAAATTTCAAAATTTTCAGAATTTTCTTGAACTTAAATTTTCCAGACGTATCTCGAATTTTTCAATTTTTGGTAATTTTGAATTTTGTGAATTTTCTAGAGATTGTTTAATTGTTCGCAAGTTTTGATTTGCAGAAGTATTTACCGTAAACACTCTAATAGAACGTCATCCGATTCGTCAAATTTGAGCCCATGTATCTCATTTTTTGTGAGAGATATCACAAAGTGGCCAACTGATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATATCTTTAAGAAGAACCGAGATATATGAGCTCAAAGTGGACGGTTCGGTTTTTTAAAATTGTTTGAATTTGGCACATTTTCAACTTTTTTTCTTCGAGGATTTCTTTTTTTTTAATTTCAAGCAAATCGAAGTTTAACTTATTGGAAATCTGAATTTTCTGAAAAAAATTTTCTGAAATTTTTATTTGGGAACGTTTTATTCATATCTTCCCTGTCCAAACAAGACACAAATGG</canonical>
            <polymorphic>TATGTCCGGATGTATGTAGCGCACCTTGTCACCCGTTCAAAGTTAACCGTTCAAGCTGAAACCTGGACAGATAGATCAGAATTGTGTCTTAGTTGATGCCCGAACTTTTGGTTTTTCGAAATTTTGATTTTGAAGTCTTCTGGAGACGTTCCTTGGTTTCACCCACACTAAAGAGTGGTGGGCGATGGTGGAGGGCGACCGGAGGCCAGGAGGTTAAGCCCCGAAGGTGCGTAAACCGACTGGTATAAGATCAAAAAATCAATGGGATCTCTGAAAACCCCTAGAAGTTTTTCTAGAAATTTCGAAATCTTGATATTTTGCATTCGAAAAAAATAGATTGAAATCTTCTGGAAAAAATCGTTATTCTTTGTGTTTTGGAATTGAGGAGAAAACATCGGAATAGATCGTTCCGATTTGAGGGTGTGTGTGTGTAGATTGGACAAGGAAATGTCAGTCTAGTTCTGGAGATTCTTTTTCTGAAATTTCAAAATTTTCAGAAWTTTCTTGAACTTAAATTTTCCAGACGTATCTCGAATTTTTCAATTTTTGGTAATTTTGAATTTTGTGAATTTTCTAGAGATTGTTTAATTGTTCGCAAGTTTTGATTTGCAGAAGTATTTACCGTAAACACTCTAATAGAACGTCATCCGATTCGTCAAATTTGAGCCCATGTATCTCATTTTTTGTGAGAGATATCACAAAGTGGCCAACTGATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATATCTTTAAGAAGAACCGAGATATATGAGCTCAAAGTGGACGGTTCGGTTTTTTAAAATTGTTTGAATTTGGCACATTTTCAACTTTTTTTCTTCGAGGATTTCTTTTTTTTTAATTTCAAGCAAATCGAAGTTTAACTTATTGGAAATCTGAATTTTCTGAAAAAAATTTTCTGAAATTTTTATTTGGGAACGTTTTATTCATATCTTCCCTGTCCAAACAAGACACAAATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>183 178 173 119 91 87 58 25 20 16 14 10 9 9 8</canonical_bands>
                <polymorphic_bands>183 178 173 119 91 87 58 25 25 20 14 10 9 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>178 164 102 81 79 72 58 48 40 39 20 19 16 14 10 10 9 9 9 8 8 7</canonical_bands>
                <polymorphic_bands>178 164 102 81 79 72 58 48 40 39 25 20 19 14 10 10 9 9 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCGTTATTCTTTGTGTTTTG</pcr_primer_p1>
		<pcr_primer_p2>AACTTGCGAACAATTAAACAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATCGTTATTCTTTGTGTTTTGGAATTGAGGAGAAAACATCGGAATAGATCGTTCCGATTTGAGGGTGTGTGTGTGTAGATTGGACAAGGAAATGTCAGTCTAGTTCTGGAGATTCTTTTTCTGAAATTTCAAAATTTTCAGAATTTTCTTGAACTTAAATTTTCCAGACGTATCTCGAATTTTTCAATTTTTGGTAATTTTGAATTTTGTGAATTTTCTAGAGATTGTTTAATTGTTCGCAAGTT</canonical_amplicon>
		<polymorphic_amplicon>AAATCGTTATTCTTTGTGTTTTGGAATTGAGGAGAAAACATCGGAATAGATCGTTCCGATTTGAGGGTGTGTGTGTGTAGATTGGACAAGGAAATGTCAGTCTAGTTCTGGAGATTCTTTTTCTGAAATTTCAAAATTTTCAGAAWTTTCTTGAACTTAAATTTTCCAGACGTATCTCGAATTTTTCAATTTTTGGTAATTTTGAATTTTGTGAATTTTCTAGAGATTGTTTAATTGTTCGCAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35639</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>150702</contig_pos>
        <strand></strand>
        <context>ATTTTGAATT[T/C]TGTGAATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAATTTTCCAGACGTATCTCGAATTTTTCAATTTTTGGTAATTTTGAATT</left_flank>
        <right_flank>TGTGAATTTTCTAGAGATTGTTTAATTGTTCGCAAGTTTTGATTTGCAGA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGACAGATAGATCAGAATTGTGTCTTAGTTGATGCCCGAACTTTTGGTTTTTCGAAATTTTGATTTTGAAGTCTTCTGGAGACGTTCCTTGGTTTCACCCACACTAAAGAGTGGTGGGCGATGGTGGAGGGCGACCGGAGGCCAGGAGGTTAAGCCCCGAAGGTGCGTAAACCGACTGGTATAAGATCAAAAAATCAATGGGATCTCTGAAAACCCCTAGAAGTTTTTCTAGAAATTTCGAAATCTTGATATTTTGCATTCGAAAAAAATAGATTGAAATCTTCTGGAAAAAATCGTTATTCTTTGTGTTTTGGAATTGAGGAGAAAACATCGGAATAGATCGTTCCGATTTGAGGGTGTGTGTGTGTAGATTGGACAAGGAAATGTCAGTCTAGTTCTGGAGATTCTTTTTCTGAAATTTCAAAATTTTCAGAATTTTCTTGAACTTAAATTTTCCAGACGTATCTCGAATTTTTCAATTTTTGGTAATTTTGAATTTTGTGAATTTTCTAGAGATTGTTTAATTGTTCGCAAGTTTTGATTTGCAGAAGTATTTACCGTAAACACTCTAATAGAACGTCATCCGATTCGTCAAATTTGAGCCCATGTATCTCATTTTTTGTGAGAGATATCACAAAGTGGCCAACTGATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATATCTTTAAGAAGAACCGAGATATATGAGCTCAAAGTGGACGGTTCGGTTTTTTAAAATTGTTTGAATTTGGCACATTTTCAACTTTTTTTCTTCGAGGATTTCTTTTTTTTTAATTTCAAGCAAATCGAAGTTTAACTTATTGGAAATCTGAATTTTCTGAAAAAAATTTTCTGAAATTTTTATTTGGGAACGTTTTATTCATATCTTCCCTGTCCAAACAAGACACAAATGGCCTCAGGAACAACACAAAAGATCAAAATCGGCCTCTTCAAAATAGATGAAAATCAGTTCAACC</canonical>
            <polymorphic>TGGACAGATAGATCAGAATTGTGTCTTAGTTGATGCCCGAACTTTTGGTTTTTCGAAATTTTGATTTTGAAGTCTTCTGGAGACGTTCCTTGGTTTCACCCACACTAAAGAGTGGTGGGCGATGGTGGAGGGCGACCGGAGGCCAGGAGGTTAAGCCCCGAAGGTGCGTAAACCGACTGGTATAAGATCAAAAAATCAATGGGATCTCTGAAAACCCCTAGAAGTTTTTCTAGAAATTTCGAAATCTTGATATTTTGCATTCGAAAAAAATAGATTGAAATCTTCTGGAAAAAATCGTTATTCTTTGTGTTTTGGAATTGAGGAGAAAACATCGGAATAGATCGTTCCGATTTGAGGGTGTGTGTGTGTAGATTGGACAAGGAAATGTCAGTCTAGTTCTGGAGATTCTTTTTCTGAAATTTCAAAATTTTCAGAATTTTCTTGAACTTAAATTTTCCAGACGTATCTCGAATTTTTCAATTTTTGGTAATTTTGAATTYTGTGAATTTTCTAGAGATTGTTTAATTGTTCGCAAGTTTTGATTTGCAGAAGTATTTACCGTAAACACTCTAATAGAACGTCATCCGATTCGTCAAATTTGAGCCCATGTATCTCATTTTTTGTGAGAGATATCACAAAGTGGCCAACTGATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATATCTTTAAGAAGAACCGAGATATATGAGCTCAAAGTGGACGGTTCGGTTTTTTAAAATTGTTTGAATTTGGCACATTTTCAACTTTTTTTCTTCGAGGATTTCTTTTTTTTTAATTTCAAGCAAATCGAAGTTTAACTTATTGGAAATCTGAATTTTCTGAAAAAAATTTTCTGAAATTTTTATTTGGGAACGTTTTATTCATATCTTCCCTGTCCAAACAAGACACAAATGGCCTCAGGAACAACACAAAAGATCAAAATCGGCCTCTTCAAAATAGATGAAAATCAGTTCAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>183 178 173 121 91 87 56 25 20 16 14 10 9 9 8</canonical_bands>
                <polymorphic_bands>183 178 173 121 91 87 56 34 20 16 14 10 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTAAATTTTCCAGACGTATCTC</pcr_primer_p1>
		<pcr_primer_p2>TGCCAAATTCAAACAATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>332</pcr_amplicon_size>
		<canonical_amplicon>ACTTAAATTTTCCAGACGTATCTCGAATTTTTCAATTTTTGGTAATTTTGAATTTTGTGAATTTTCTAGAGATTGTTTAATTGTTCGCAAGTTTTGATTTGCAGAAGTATTTACCGTAAACACTCTAATAGAACGTCATCCGATTCGTCAAATTTGAGCCCATGTATCTCATTTTTTGTGAGAGATATCACAAAGTGGCCAACTGATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATATCTTTAAGAAGAACCGAGATATATGAGCTCAAAGTGGACGGTTCGGTTTTTTAAAATTGTTTGAATTTGGCA</canonical_amplicon>
		<polymorphic_amplicon>ACTTAAATTTTCCAGACGTATCTCGAATTTTTCAATTTTTGGTAATTTTGAATTYTGTGAATTTTCTAGAGATTGTTTAATTGTTCGCAAGTTTTGATTTGCAGAAGTATTTACCGTAAACACTCTAATAGAACGTCATCCGATTCGTCAAATTTGAGCCCATGTATCTCATTTTTTGTGAGAGATATCACAAAGTGGCCAACTGATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATATCTTTAAGAAGAACCGAGATATATGAGCTCAAAGTGGACGGTTCGGTTTTTTAAAATTGTTTGAATTTGGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35640</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>150742</contig_pos>
        <strand></strand>
        <context>TCGCAAGTTT[T/C]GATTTGCAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTTTGAATTTTGTGAATTTTCTAGAGATTGTTTAATTGTTCGCAAGTTT</left_flank>
        <right_flank>GATTTGCAGAAGTATTTACCGTAAACACTCTAATAGAACGTCATCCGATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTTGGTTTTTCGAAATTTTGATTTTGAAGTCTTCTGGAGACGTTCCTTGGTTTCACCCACACTAAAGAGTGGTGGGCGATGGTGGAGGGCGACCGGAGGCCAGGAGGTTAAGCCCCGAAGGTGCGTAAACCGACTGGTATAAGATCAAAAAATCAATGGGATCTCTGAAAACCCCTAGAAGTTTTTCTAGAAATTTCGAAATCTTGATATTTTGCATTCGAAAAAAATAGATTGAAATCTTCTGGAAAAAATCGTTATTCTTTGTGTTTTGGAATTGAGGAGAAAACATCGGAATAGATCGTTCCGATTTGAGGGTGTGTGTGTGTAGATTGGACAAGGAAATGTCAGTCTAGTTCTGGAGATTCTTTTTCTGAAATTTCAAAATTTTCAGAATTTTCTTGAACTTAAATTTTCCAGACGTATCTCGAATTTTTCAATTTTTGGTAATTTTGAATTTTGTGAATTTTCTAGAGATTGTTTAATTGTTCGCAAGTTTTGATTTGCAGAAGTATTTACCGTAAACACTCTAATAGAACGTCATCCGATTCGTCAAATTTGAGCCCATGTATCTCATTTTTTGTGAGAGATATCACAAAGTGGCCAACTGATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATATCTTTAAGAAGAACCGAGATATATGAGCTCAAAGTGGACGGTTCGGTTTTTTAAAATTGTTTGAATTTGGCACATTTTCAACTTTTTTTCTTCGAGGATTTCTTTTTTTTTAATTTCAAGCAAATCGAAGTTTAACTTATTGGAAATCTGAATTTTCTGAAAAAAATTTTCTGAAATTTTTATTTGGGAACGTTTTATTCATATCTTCCCTGTCCAAACAAGACACAAATGGCCTCAGGAACAACACAAAAGATCAAAATCGGCCTCTTCAAAATAGATGAAAATCAGTTCAACCGGATTTCTCTGTCTGTATTGAACACAATCCAGCCTTAGCC</canonical>
            <polymorphic>ACTTTTGGTTTTTCGAAATTTTGATTTTGAAGTCTTCTGGAGACGTTCCTTGGTTTCACCCACACTAAAGAGTGGTGGGCGATGGTGGAGGGCGACCGGAGGCCAGGAGGTTAAGCCCCGAAGGTGCGTAAACCGACTGGTATAAGATCAAAAAATCAATGGGATCTCTGAAAACCCCTAGAAGTTTTTCTAGAAATTTCGAAATCTTGATATTTTGCATTCGAAAAAAATAGATTGAAATCTTCTGGAAAAAATCGTTATTCTTTGTGTTTTGGAATTGAGGAGAAAACATCGGAATAGATCGTTCCGATTTGAGGGTGTGTGTGTGTAGATTGGACAAGGAAATGTCAGTCTAGTTCTGGAGATTCTTTTTCTGAAATTTCAAAATTTTCAGAATTTTCTTGAACTTAAATTTTCCAGACGTATCTCGAATTTTTCAATTTTTGGTAATTTTGAATTTTGTGAATTTTCTAGAGATTGTTTAATTGTTCGCAAGTTTYGATTTGCAGAAGTATTTACCGTAAACACTCTAATAGAACGTCATCCGATTCGTCAAATTTGAGCCCATGTATCTCATTTTTTGTGAGAGATATCACAAAGTGGCCAACTGATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATATCTTTAAGAAGAACCGAGATATATGAGCTCAAAGTGGACGGTTCGGTTTTTTAAAATTGTTTGAATTTGGCACATTTTCAACTTTTTTTCTTCGAGGATTTCTTTTTTTTTAATTTCAAGCAAATCGAAGTTTAACTTATTGGAAATCTGAATTTTCTGAAAAAAATTTTCTGAAATTTTTATTTGGGAACGTTTTATTCATATCTTCCCTGTCCAAACAAGACACAAATGGCCTCAGGAACAACACAAAAGATCAAAATCGGCCTCTTCAAAATAGATGAAAATCAGTTCAACCGGATTTCTCTGTCTGTATTGAACACAATCCAGCCTTAGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGACGTATCTCGAATTTT</pcr_primer_p1>
		<pcr_primer_p2>TGCCAAATTCAAACAATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>CCAGACGTATCTCGAATTTTTCAATTTTTGGTAATTTTGAATTTTGTGAATTTTCTAGAGATTGTTTAATTGTTCGCAAGTTTTGATTTGCAGAAGTATTTACCGTAAACACTCTAATAGAACGTCATCCGATTCGTCAAATTTGAGCCCATGTATCTCATTTTTTGTGAGAGATATCACAAAGTGGCCAACTGATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATATCTTTAAGAAGAACCGAGATATATGAGCTCAAAGTGGACGGTTCGGTTTTTTAAAATTGTTTGAATTTGGCA</canonical_amplicon>
		<polymorphic_amplicon>CCAGACGTATCTCGAATTTTTCAATTTTTGGTAATTTTGAATTTTGTGAATTTTCTAGAGATTGTTTAATTGTTCGCAAGTTTYGATTTGCAGAAGTATTTACCGTAAACACTCTAATAGAACGTCATCCGATTCGTCAAATTTGAGCCCATGTATCTCATTTTTTGTGAGAGATATCACAAAGTGGCCAACTGATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATATCTTTAAGAAGAACCGAGATATATGAGCTCAAAGTGGACGGTTCGGTTTTTTAAAATTGTTTGAATTTGGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35641</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>150913</contig_pos>
        <strand></strand>
        <context>tgatatcttt[A/G]agawgaaccg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATATCTTT</left_flank>
        <right_flank>AGAAGAACCGAGATATATGAGCTCAAAGTGGACGGTTCGGTTTTTTAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACCCCTAGAAGTTTTTCTAGAAATTTCGAAATCTTGATATTTTGCATTCGAAAAAAATAGATTGAAATCTTCTGGAAAAAATCGTTATTCTTTGTGTTTTGGAATTGAGGAGAAAACATCGGAATAGATCGTTCCGATTTGAGGGTGTGTGTGTGTAGATTGGACAAGGAAATGTCAGTCTAGTTCTGGAGATTCTTTTTCTGAAATTTCAAAATTTTCAGAATTTTCTTGAACTTAAATTTTCCAGACGTATCTCGAATTTTTCAATTTTTGGTAATTTTGAATTTTGTGAATTTTCTAGAGATTGTTTAATTGTTCGCAAGTTTTGATTTGCAGAAGTATTTACCGTAAACACTCTAATAGAACGTCATCCGATTCGTCAAATTTGAGCCCATGTATCTCATTTTTTGTGAGAGATATCACAAAGTGGCCAACTGATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATATCTTTAAGAAGAACCGAGATATATGAGCTCAAAGTGGACGGTTCGGTTTTTTAAAATTGTTTGAATTTGGCACATTTTCAACTTTTTTTCTTCGAGGATTTCTTTTTTTTTAATTTCAAGCAAATCGAAGTTTAACTTATTGGAAATCTGAATTTTCTGAAAAAAATTTTCTGAAATTTTTATTTGGGAACGTTTTATTCATATCTTCCCTGTCCAAACAAGACACAAATGGCCTCAGGAACAACACAAAAGATCAAAATCGGCCTCTTCAAAATAGATGAAAATCAGTTCAACCGGATTTCTCTGTCTGTATTGAACACAATCCAGCCTTAGCCATTTTTGTGACCAGGTAGCTTTTTTCATAGCTGGCAAAAACATATATTTTTTTTGGTTACGGTACGCTAATAGAAACCCAACCTCTTTGTCCACTTTGAGCTCAATTATCTCGGTTCCTATGAGAGATATCAAAAAGTGATTTACTGATAAAATGTCACTGATATTATGAT</canonical>
            <polymorphic>AAACCCCTAGAAGTTTTTCTAGAAATTTCGAAATCTTGATATTTTGCATTCGAAAAAAATAGATTGAAATCTTCTGGAAAAAATCGTTATTCTTTGTGTTTTGGAATTGAGGAGAAAACATCGGAATAGATCGTTCCGATTTGAGGGTGTGTGTGTGTAGATTGGACAAGGAAATGTCAGTCTAGTTCTGGAGATTCTTTTTCTGAAATTTCAAAATTTTCAGAATTTTCTTGAACTTAAATTTTCCAGACGTATCTCGAATTTTTCAATTTTTGGTAATTTTGAATTTTGTGAATTTTCTAGAGATTGTTTAATTGTTCGCAAGTTTTGATTTGCAGAAGTATTTACCGTAAACACTCTAATAGAACGTCATCCGATTCGTCAAATTTGAGCCCATGTATCTCATTTTTTGTGAGAGATATCACAAAGTGGCCAACTGATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATATCTTTRAGAAGAACCGAGATATATGAGCTCAAAGTGGACGGTTCGGTTTTTTAAAATTGTTTGAATTTGGCACATTTTCAACTTTTTTTCTTCGAGGATTTCTTTTTTTTTAATTTCAAGCAAATCGAAGTTTAACTTATTGGAAATCTGAATTTTCTGAAAAAAATTTTCTGAAATTTTTATTTGGGAACGTTTTATTCATATCTTCCCTGTCCAAACAAGACACAAATGGCCTCAGGAACAACACAAAAGATCAAAATCGGCCTCTTCAAAATAGATGAAAATCAGTTCAACCGGATTTCTCTGTCTGTATTGAACACAATCCAGCCTTAGCCATTTTTGTGACCAGGTAGCTTTTTTCATAGCTGGCAAAAACATATATTTTTTTTGGTTACGGTACGCTAATAGAAACCCAACCTCTTTGTCCACTTTGAGCTCAATTATCTCGGTTCCTATGAGAGATATCAAAAAGTGATTTACTGATAAAATGTCACTGATATTATGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>374 237 187 74 59 47 22</canonical_bands>
                <polymorphic_bands>374 237 234 74 59 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGTTTAATTGTTCGCAAGTT</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAATCCTCGAAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>294</pcr_amplicon_size>
		<canonical_amplicon>ATTGTTTAATTGTTCGCAAGTTTTGATTTGCAGAAGTATTTACCGTAAACACTCTAATAGAACGTCATCCGATTCGTCAAATTTGAGCCCATGTATCTCATTTTTTGTGAGAGATATCACAAAGTGGCCAACTGATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATATCTTTAAGAAGAACCGAGATATATGAGCTCAAAGTGGACGGTTCGGTTTTTTAAAATTGTTTGAATTTGGCACATTTTCAACTTTTTTTCTTCGAGGATTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTGTTTAATTGTTCGCAAGTTTTGATTTGCAGAAGTATTTACCGTAAACACTCTAATAGAACGTCATCCGATTCGTCAAATTTGAGCCCATGTATCTCATTTTTTGTGAGAGATATCACAAAGTGGCCAACTGATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATATCTTTRAGAAGAACCGAGATATATGAGCTCAAAGTGGACGGTTCGGTTTTTTAAAATTGTTTGAATTTGGCACATTTTCAACTTTTTTTCTTCGAGGATTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35642</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>150917</contig_pos>
        <strand></strand>
        <context>atctttraga[A/T]gaaccgagat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATATCTTTAAGA</left_flank>
        <right_flank>GAACCGAGATATATGAGCTCAAAGTGGACGGTTCGGTTTTTTAAAATTGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCTAGAAGTTTTTCTAGAAATTTCGAAATCTTGATATTTTGCATTCGAAAAAAATAGATTGAAATCTTCTGGAAAAAATCGTTATTCTTTGTGTTTTGGAATTGAGGAGAAAACATCGGAATAGATCGTTCCGATTTGAGGGTGTGTGTGTGTAGATTGGACAAGGAAATGTCAGTCTAGTTCTGGAGATTCTTTTTCTGAAATTTCAAAATTTTCAGAATTTTCTTGAACTTAAATTTTCCAGACGTATCTCGAATTTTTCAATTTTTGGTAATTTTGAATTTTGTGAATTTTCTAGAGATTGTTTAATTGTTCGCAAGTTTTGATTTGCAGAAGTATTTACCGTAAACACTCTAATAGAACGTCATCCGATTCGTCAAATTTGAGCCCATGTATCTCATTTTTTGTGAGAGATATCACAAAGTGGCCAACTGATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATATCTTTAAGAAGAACCGAGATATATGAGCTCAAAGTGGACGGTTCGGTTTTTTAAAATTGTTTGAATTTGGCACATTTTCAACTTTTTTTCTTCGAGGATTTCTTTTTTTTTAATTTCAAGCAAATCGAAGTTTAACTTATTGGAAATCTGAATTTTCTGAAAAAAATTTTCTGAAATTTTTATTTGGGAACGTTTTATTCATATCTTCCCTGTCCAAACAAGACACAAATGGCCTCAGGAACAACACAAAAGATCAAAATCGGCCTCTTCAAAATAGATGAAAATCAGTTCAACCGGATTTCTCTGTCTGTATTGAACACAATCCAGCCTTAGCCATTTTTGTGACCAGGTAGCTTTTTTCATAGCTGGCAAAAACATATATTTTTTTTGGTTACGGTACGCTAATAGAAACCCAACCTCTTTGTCCACTTTGAGCTCAATTATCTCGGTTCCTATGAGAGATATCAAAAAGTGATTTACTGATAAAATGTCACTGATATTATGATGAGT</canonical>
            <polymorphic>CCCTAGAAGTTTTTCTAGAAATTTCGAAATCTTGATATTTTGCATTCGAAAAAAATAGATTGAAATCTTCTGGAAAAAATCGTTATTCTTTGTGTTTTGGAATTGAGGAGAAAACATCGGAATAGATCGTTCCGATTTGAGGGTGTGTGTGTGTAGATTGGACAAGGAAATGTCAGTCTAGTTCTGGAGATTCTTTTTCTGAAATTTCAAAATTTTCAGAATTTTCTTGAACTTAAATTTTCCAGACGTATCTCGAATTTTTCAATTTTTGGTAATTTTGAATTTTGTGAATTTTCTAGAGATTGTTTAATTGTTCGCAAGTTTTGATTTGCAGAAGTATTTACCGTAAACACTCTAATAGAACGTCATCCGATTCGTCAAATTTGAGCCCATGTATCTCATTTTTTGTGAGAGATATCACAAAGTGGCCAACTGATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATATCTTTAAGAWGAACCGAGATATATGAGCTCAAAGTGGACGGTTCGGTTTTTTAAAATTGTTTGAATTTGGCACATTTTCAACTTTTTTTCTTCGAGGATTTCTTTTTTTTTAATTTCAAGCAAATCGAAGTTTAACTTATTGGAAATCTGAATTTTCTGAAAAAAATTTTCTGAAATTTTTATTTGGGAACGTTTTATTCATATCTTCCCTGTCCAAACAAGACACAAATGGCCTCAGGAACAACACAAAAGATCAAAATCGGCCTCTTCAAAATAGATGAAAATCAGTTCAACCGGATTTCTCTGTCTGTATTGAACACAATCCAGCCTTAGCCATTTTTGTGACCAGGTAGCTTTTTTCATAGCTGGCAAAAACATATATTTTTTTTGGTTACGGTACGCTAATAGAAACCCAACCTCTTTGTCCACTTTGAGCTCAATTATCTCGGTTCCTATGAGAGATATCAAAAAGTGATTTACTGATAAAATGTCACTGATATTATGATGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGTTTAATTGTTCGCAAGTT</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAATCCTCGAAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>294</pcr_amplicon_size>
		<canonical_amplicon>ATTGTTTAATTGTTCGCAAGTTTTGATTTGCAGAAGTATTTACCGTAAACACTCTAATAGAACGTCATCCGATTCGTCAAATTTGAGCCCATGTATCTCATTTTTTGTGAGAGATATCACAAAGTGGCCAACTGATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATATCTTTAAGAAGAACCGAGATATATGAGCTCAAAGTGGACGGTTCGGTTTTTTAAAATTGTTTGAATTTGGCACATTTTCAACTTTTTTTCTTCGAGGATTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTGTTTAATTGTTCGCAAGTTTTGATTTGCAGAAGTATTTACCGTAAACACTCTAATAGAACGTCATCCGATTCGTCAAATTTGAGCCCATGTATCTCATTTTTTGTGAGAGATATCACAAAGTGGCCAACTGATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATATCTTTAAGAWGAACCGAGATATATGAGCTCAAAGTGGACGGTTCGGTTTTTTAAAATTGTTTGAATTTGGCACATTTTCAACTTTTTTTCTTCGAGGATTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35643</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>151079</contig_pos>
        <strand></strand>
        <context>AAAAATTTTC[T/C]GAAATTTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAATCGAAGTTTAACTTATTGGAAATCTGAATTTTCTGAAAAAAATTTTC</left_flank>
        <right_flank>GAAATTTTTATTTGGGAACGTTTTATTCATATCTTCCCTGTCCAAACAAG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGGAAATGTCAGTCTAGTTCTGGAGATTCTTTTTCTGAAATTTCAAAATTTTCAGAATTTTCTTGAACTTAAATTTTCCAGACGTATCTCGAATTTTTCAATTTTTGGTAATTTTGAATTTTGTGAATTTTCTAGAGATTGTTTAATTGTTCGCAAGTTTTGATTTGCAGAAGTATTTACCGTAAACACTCTAATAGAACGTCATCCGATTCGTCAAATTTGAGCCCATGTATCTCATTTTTTGTGAGAGATATCACAAAGTGGCCAACTGATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATATCTTTAAGAAGAACCGAGATATATGAGCTCAAAGTGGACGGTTCGGTTTTTTAAAATTGTTTGAATTTGGCACATTTTCAACTTTTTTTCTTCGAGGATTTCTTTTTTTTTAATTTCAAGCAAATCGAAGTTTAACTTATTGGAAATCTGAATTTTCTGAAAAAAATTTTCTGAAATTTTTATTTGGGAACGTTTTATTCATATCTTCCCTGTCCAAACAAGACACAAATGGCCTCAGGAACAACACAAAAGATCAAAATCGGCCTCTTCAAAATAGATGAAAATCAGTTCAACCGGATTTCTCTGTCTGTATTGAACACAATCCAGCCTTAGCCATTTTTGTGACCAGGTAGCTTTTTTCATAGCTGGCAAAAACATATATTTTTTTTGGTTACGGTACGCTAATAGAAACCCAACCTCTTTGTCCACTTTGAGCTCAATTATCTCGGTTCCTATGAGAGATATCAAAAAGTGATTTACTGATAAAATGTCACTGATATTATGATGAGTGTTTTATCAGTTAATAGATTCTTGGTATCTCTTAAAGGAGCTGAGATAATTGAGCTCAAAGTATGGTCCACCCAGCTCCCGTTAATTAAACCAAAGTTCTCTTCAATTTCTACCCGGTTCCTACCATAAGACGTCATCCAAAAAAAAGTGAAATTTGTTTTT</canonical>
            <polymorphic>CAAGGAAATGTCAGTCTAGTTCTGGAGATTCTTTTTCTGAAATTTCAAAATTTTCAGAATTTTCTTGAACTTAAATTTTCCAGACGTATCTCGAATTTTTCAATTTTTGGTAATTTTGAATTTTGTGAATTTTCTAGAGATTGTTTAATTGTTCGCAAGTTTTGATTTGCAGAAGTATTTACCGTAAACACTCTAATAGAACGTCATCCGATTCGTCAAATTTGAGCCCATGTATCTCATTTTTTGTGAGAGATATCACAAAGTGGCCAACTGATAAAATGTTGCTGATATCATGATAAACATTTTATCAGTTGACAACTTTTTGATATCTTTAAGAAGAACCGAGATATATGAGCTCAAAGTGGACGGTTCGGTTTTTTAAAATTGTTTGAATTTGGCACATTTTCAACTTTTTTTCTTCGAGGATTTCTTTTTTTTTAATTTCAAGCAAATCGAAGTTTAACTTATTGGAAATCTGAATTTTCTGAAAAAAATTTTCYGAAATTTTTATTTGGGAACGTTTTATTCATATCTTCCCTGTCCAAACAAGACACAAATGGCCTCAGGAACAACACAAAAGATCAAAATCGGCCTCTTCAAAATAGATGAAAATCAGTTCAACCGGATTTCTCTGTCTGTATTGAACACAATCCAGCCTTAGCCATTTTTGTGACCAGGTAGCTTTTTTCATAGCTGGCAAAAACATATATTTTTTTTGGTTACGGTACGCTAATAGAAACCCAACCTCTTTGTCCACTTTGAGCTCAATTATCTCGGTTCCTATGAGAGATATCAAAAAGTGATTTACTGATAAAATGTCACTGATATTATGATGAGTGTTTTATCAGTTAATAGATTCTTGGTATCTCTTAAAGGAGCTGAGATAATTGAGCTCAAAGTATGGTCCACCCAGCTCCCGTTAATTAAACCAAAGTTCTCTTCAATTTCTACCCGGTTCCTACCATAAGACGTCATCCAAAAAAAAGTGAAATTTGTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAATTTCAAGCAAATCGAAGT</pcr_primer_p1>
		<pcr_primer_p2>AAGCTACCTGGTCACAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTAATTTCAAGCAAATCGAAGTTTAACTTATTGGAAATCTGAATTTTCTGAAAAAAATTTTCTGAAATTTTTATTTGGGAACGTTTTATTCATATCTTCCCTGTCCAAACAAGACACAAATGGCCTCAGGAACAACACAAAAGATCAAAATCGGCCTCTTCAAAATAGATGAAAATCAGTTCAACCGGATTTCTCTGTCTGTATTGAACACAATCCAGCCTTAGCCATTTTTGTGACCAGGTAGCTT</canonical_amplicon>
		<polymorphic_amplicon>TTAATTTCAAGCAAATCGAAGTTTAACTTATTGGAAATCTGAATTTTCTGAAAAAAATTTTCYGAAATTTTTATTTGGGAACGTTTTATTCATATCTTCCCTGTCCAAACAAGACACAAATGGCCTCAGGAACAACACAAAAGATCAAAATCGGCCTCTTCAAAATAGATGAAAATCAGTTCAACCGGATTTCTCTGTCTGTATTGAACACAATCCAGCCTTAGCCATTTTTGTGACCAGGTAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35644</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>153401</contig_pos>
        <strand>+</strand>
        <context>CTAGGAAGCG[C/T]GTGCTATTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCATGAGTGTTTTCCTTTCAGTGCTCTCATCGTGACCACTAGGAAGCG</left_flank>
        <right_flank>GTGCTATTGGGAACTTTGTCTATGACAAGCGATAAGCTTGTCACCGGTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAATTTTTCAATTTTTGGTAATTTTGAATTCTGTGAATTTTCTAGAGATTGTTTAATTGTTCGCAAGTTTTGATTTTCTCATATTCAAATTCCCACCCTTTTTCTCTCCCTTCGTGCAAGCGCGCCCTATCGTTGAGGTCTCGCCACGAAGGGGTTAAAGGCGCACACACACTCGAAACGGGTTTACTGGCCTATTTTTACTCAGATTTAACTGAGTCTTACTCAGTCTAATTCTAGTCTAGTAGTTAGTGCTGTTCCGTGACGTTTCCCTTCAGTTTGCAAGTCCGTCAACCTCGTTACTCATCATTATTCCTACTATTCCAATACTATAAGACCTCCGGCGATCCCCGATCGCCTTACCGGCCTTATTGGACTATCGGAAACCGCTAATGATGTGAGTTGATATAGATTTCCTTCTGAATAGACTAACGGCCAGTTCTGTGACCTGTTTCATGAGTGTTTTCCTTTCAGTGCTCTCATCGTGACCACTAGGAAGCGTGTGCTATTGGGAACTTTGTCTATGACAAGCGATAAGCTTGTCACCGGTAGGAGAAGGGTTTTTGTTGCCCAAGGCTTTTTGCCCCTTCAACTATTGAGTGATCAGTGATGTCCTTCTCGTCCGTCTCCAAGCCAGCCCGACTCCAAGGAAACCTCTTATTGACGATATATTCTCTTTATTAAATATATACCGCTCAATAAATGGGTCACTGATACTACTGTTTCTTTTATTGTTTCCACACCGCTTATCTGCCCGCTCGTCGTCCCACTCCTCGCTACAGACATAACTAGTTCCCCTGTTACCGATGCACTTTCCCCTATTTTACCAGACAGCACGCACAAGGAGGTAGCTTGTTTCTCTGGAGCCGTCACGGGGAATCCAACACTTCCCAAGGTGACCCCTCTACAGCAACATCGCCTACGTTTTCTAAGTTTTCGACCTGTTCAAACATTTCCACTTTTTCCTCTCAATTCAGTACTTCTCAGTTCAGCTACTCGGTA</canonical>
            <polymorphic>CGAATTTTTCAATTTTTGGTAATTTTGAATTCTGTGAATTTTCTAGAGATTGTTTAATTGTTCGCAAGTTTTGATTTTCTCATATTCAAATTCCCACCCTTTTTCTCTCCCTTCGTGCAAGCGCGCCCTATCGTTGAGGTCTCGCCACGAAGGGGTTAAAGGCGCACACACACTCGAAACGGGTTTACTGGCCTATTTTTACTCAGATTTAACTGAGTCTTACTCAGTCTAATTCTAGTCTAGTAGTTAGTGCTGTTCCGTGACGTTTCCCTTCAGTTTGCAAGTCCGTCAACCTCGTTACTCATCATTATTCCTACTATTCCAATACTATAAGACCTCCGGCGATCCCCGATCGCCTTACCGGCCTTATTGGACTATCGGAAACCGCTAATGATGTGAGTTGATATAGATTTCCTTCTGAATAGACTAACGGCCAGTTCTGTGACCTGTTTCATGAGTGTTTTCCTTTCAGTGCTCTCATCGTGACCACTAGGAAGCGYGTGCTATTGGGAACTTTGTCTATGACAAGCGATAAGCTTGTCACCGGTAGGAGAAGGGTTTTTGTTGCCCAAGGCTTTTTGCCCCTTCAACTATTGAGTGATCAGTGATGTCCTTCTCGTCCGTCTCCAAGCCAGCCCGACTCCAAGGAAACCTCTTATTGACGATATATTCTCTTTATTAAATATATACCGCTCAATAAATGGGTCACTGATACTACTGTTTCTTTTATTGTTTCCACACCGCTTATCTGCCCGCTCGTCGTCCCACTCCTCGCTACAGACATAACTAGTTCCCCTGTTACCGATGCACTTTCCCCTATTTTACCAGACAGCACGCACAAGGAGGTAGCTTGTTTCTCTGGAGCCGTCACGGGGAATCCAACACTTCCCAAGGTGACCCCTCTACAGCAACATCGCCTACGTTTTCTAAGTTTTCGACCTGTTCAAACATTTCCACTTTTTCCTCTCAATTCAGTACTTCTCAGTTCAGCTACTCGGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>136 101 80 60 60 57 46 44 42 40 36 32 30 30 27 25 21 19 16 14 14 12 12 11 10 7 4 4 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>136 101 80 60 60 57 46 44 42 40 36 32 30 30 27 25 21 19 16 14 14 14 12 11 10 7 4 4 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTATTGGACTATCGGAAAC</pcr_primer_p1>
		<pcr_primer_p2>AGGACATCACTGATCACTCAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTTATTGGACTATCGGAAACCGCTAATGATGTGAGTTGATATAGATTTCCTTCTGAATAGACTAACGGCCAGTTCTGTGACCTGTTTCATGAGTGTTTTCCTTTCAGTGCTCTCATCGTGACCACTAGGAAGCGTGTGCTATTGGGAACTTTGTCTATGACAAGCGATAAGCTTGTCACCGGTAGGAGAAGGGTTTTTGTTGCCCAAGGCTTTTTGCCCCTTCAACTATTGAGTGATCAGTGATGTCCT</canonical_amplicon>
		<polymorphic_amplicon>CCTTATTGGACTATCGGAAACCGCTAATGATGTGAGTTGATATAGATTTCCTTCTGAATAGACTAACGGCCAGTTCTGTGACCTGTTTCATGAGTGTTTTCCTTTCAGTGCTCTCATCGTGACCACTAGGAAGCGYGTGCTATTGGGAACTTTGTCTATGACAAGCGATAAGCTTGTCACCGGTAGGAGAAGGGTTTTTGTTGCCCAAGGCTTTTTGCCCCTTCAACTATTGAGTGATCAGTGATGTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35645</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>153468</contig_pos>
        <strand>+</strand>
        <context>GGTTTTTGTT[A/G]CCCAAGGCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTCTATGACAAGCGATAAGCTTGTCACCGGTAGGAGAAGGGTTTTTGTT</left_flank>
        <right_flank>CCCAAGGCTTTTTGCCCCTTCAACTATTGAGTGATCAGTGATGTCCTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTGATTTTCTCATATTCAAATTCCCACCCTTTTTCTCTCCCTTCGTGCAAGCGCGCCCTATCGTTGAGGTCTCGCCACGAAGGGGTTAAAGGCGCACACACACTCGAAACGGGTTTACTGGCCTATTTTTACTCAGATTTAACTGAGTCTTACTCAGTCTAATTCTAGTCTAGTAGTTAGTGCTGTTCCGTGACGTTTCCCTTCAGTTTGCAAGTCCGTCAACCTCGTTACTCATCATTATTCCTACTATTCCAATACTATAAGACCTCCGGCGATCCCCGATCGCCTTACCGGCCTTATTGGACTATCGGAAACCGCTAATGATGTGAGTTGATATAGATTTCCTTCTGAATAGACTAACGGCCAGTTCTGTGACCTGTTTCATGAGTGTTTTCCTTTCAGTGCTCTCATCGTGACCACTAGGAAGCGTGTGCTATTGGGAACTTTGTCTATGACAAGCGATAAGCTTGTCACCGGTAGGAGAAGGGTTTTTGTTGCCCAAGGCTTTTTGCCCCTTCAACTATTGAGTGATCAGTGATGTCCTTCTCGTCCGTCTCCAAGCCAGCCCGACTCCAAGGAAACCTCTTATTGACGATATATTCTCTTTATTAAATATATACCGCTCAATAAATGGGTCACTGATACTACTGTTTCTTTTATTGTTTCCACACCGCTTATCTGCCCGCTCGTCGTCCCACTCCTCGCTACAGACATAACTAGTTCCCCTGTTACCGATGCACTTTCCCCTATTTTACCAGACAGCACGCACAAGGAGGTAGCTTGTTTCTCTGGAGCCGTCACGGGGAATCCAACACTTCCCAAGGTGACCCCTCTACAGCAACATCGCCTACGTTTTCTAAGTTTTCGACCTGTTCAAACATTTCCACTTTTTCCTCTCAATTCAGTACTTCTCAGTTCAGCTACTCGGTAAATAGTACCCTCTCTCTCTCTCTCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT</canonical>
            <polymorphic>GTTTTGATTTTCTCATATTCAAATTCCCACCCTTTTTCTCTCCCTTCGTGCAAGCGCGCCCTATCGTTGAGGTCTCGCCACGAAGGGGTTAAAGGCGCACACACACTCGAAACGGGTTTACTGGCCTATTTTTACTCAGATTTAACTGAGTCTTACTCAGTCTAATTCTAGTCTAGTAGTTAGTGCTGTTCCGTGACGTTTCCCTTCAGTTTGCAAGTCCGTCAACCTCGTTACTCATCATTATTCCTACTATTCCAATACTATAAGACCTCCGGCGATCCCCGATCGCCTTACCGGCCTTATTGGACTATCGGAAACCGCTAATGATGTGAGTTGATATAGATTTCCTTCTGAATAGACTAACGGCCAGTTCTGTGACCTGTTTCATGAGTGTTTTCCTTTCAGTGCTCTCATCGTGACCACTAGGAAGCGTGTGCTATTGGGAACTTTGTCTATGACAAGCGATAAGCTTGTCACCGGTAGGAGAAGGGTTTTTGTTRCCCAAGGCTTTTTGCCCCTTCAACTATTGAGTGATCAGTGATGTCCTTCTCGTCCGTCTCCAAGCCAGCCCGACTCCAAGGAAACCTCTTATTGACGATATATTCTCTTTATTAAATATATACCGCTCAATAAATGGGTCACTGATACTACTGTTTCTTTTATTGTTTCCACACCGCTTATCTGCCCGCTCGTCGTCCCACTCCTCGCTACAGACATAACTAGTTCCCCTGTTACCGATGCACTTTCCCCTATTTTACCAGACAGCACGCACAAGGAGGTAGCTTGTTTCTCTGGAGCCGTCACGGGGAATCCAACACTTCCCAAGGTGACCCCTCTACAGCAACATCGCCTACGTTTTCTAAGTTTTCGACCTGTTCAAACATTTCCACTTTTTCCTCTCAATTCAGTACTTCTCAGTTCAGCTACTCGGTAAATAGTACCCTCTCTCTCTCTCTCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTCCTTCTGAATAGACTAACG</pcr_primer_p1>
		<pcr_primer_p2>AATAAGAGGTTTCCTTGGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GATTTCCTTCTGAATAGACTAACGGCCAGTTCTGTGACCTGTTTCATGAGTGTTTTCCTTTCAGTGCTCTCATCGTGACCACTAGGAAGCGTGTGCTATTGGGAACTTTGTCTATGACAAGCGATAAGCTTGTCACCGGTAGGAGAAGGGTTTTTGTTGCCCAAGGCTTTTTGCCCCTTCAACTATTGAGTGATCAGTGATGTCCTTCTCGTCCGTCTCCAAGCCAGCCCGACTCCAAGGAAACCTCTTATT</canonical_amplicon>
		<polymorphic_amplicon>GATTTCCTTCTGAATAGACTAACGGCCAGTTCTGTGACCTGTTTCATGAGTGTTTTCCTTTCAGTGCTCTCATCGTGACCACTAGGAAGCGTGTGCTATTGGGAACTTTGTCTATGACAAGCGATAAGCTTGTCACCGGTAGGAGAAGGGTTTTTGTTRCCCAAGGCTTTTTGCCCCTTCAACTATTGAGTGATCAGTGATGTCCTTCTCGTCCGTCTCCAAGCCAGCCCGACTCCAAGGAAACCTCTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35646</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>216275</contig_pos>
        <strand></strand>
        <context>GAGCAATCGG[T/C]CGTGAAAAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTATGTAATAGGTGTTACGGTAGTTACCTACTTAACGATGAGCAATCGG</left_flank>
        <right_flank>CGTGAAAAGGAATTAGAATTAGAAGGGTCTAATGAATTATTGAAAGTTTT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGACTGGGAAAACCCGATATGCGCCTTTAAAGATGGTGCCACCCTTTCATCAAGCGCGAGGGGGCGCGCCAACTTTAAAGGCGCATATCTCAAAAACTAAAAAAGTTACAAAAAAGTTGTCAACTGCAAAAATGAAGCTCTTTTTTTTTAGTATATTCTGAAATTTTCAGAACATTTAGAAAATTTTTTAGTATCTTTTCATAGGCTTAAACTTGAGAACACCCAAGAATTTTTTTTTAAATTTTCGTTTTTTAAAAAGATTTTGGAGTGTAAAAACTATGGATATTTTCCAATTTTTCGATTCCAAATCATCCCAAATCCCTATATTCAATCTATAGAACCTATACATCTCTAATCTATGCAATAAATGAGAAACCGAGGTCACACTGAGAAAGAGATTATGTAATAGGTGTTACGGTAGTTACCTACTTAACGATGAGCAATCGGTCGTGAAAAGGAATTAGAATTAGAAGGGTCTAATGAATTATTGAAAGTTTTTGGGGGTAGAATTTTAAAGAAAAAAGCGTAATTTAAAAAATTATGAAGTTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAAAAATTTGGAGATTTTTAAGATGTCGAATTTTCAGGATTTCAGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTCCTGGAATTTTGATATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTAAAATTCTAAGATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAATTCTGAAATTAAGAAATTCAGTAATTCAGAAATTCAAAAATCCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATT</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGACTGGGAAAACCCGATATGCGCCTTTAAAGATGGTGCCACCCTTTCATCAAGCGCGAGGGGGCGCGCCAACTTTAAAGGCGCATATCTCAAAAACTAAAAAAGTTACAAAAAAGTTGTCAACTGCAAAAATGAAGCTCTTTTTTTTTAGTATATTCTGAAATTTTCAGAACATTTAGAAAATTTTTTAGTATCTTTTCATAGGCTTAAACTTGAGAACACCCAAGAATTTTTTTTTAAATTTTCGTTTTTTAAAAAGATTTTGGAGTGTAAAAACTATGGATATTTTCCAATTTTTCGATTCCAAATCATCCCAAATCCCTATATTCAATCTATAGAACCTATACATCTCTAATCTATGCAATAAATGAGAAACCGAGGTCACACTGAGAAAGAGATTATGTAATAGGTGTTACGGTAGTTACCTACTTAACGATGAGCAATCGGYCGTGAAAAGGAATTAGAATTAGAAGGGTCTAATGAATTATTGAAAGTTTTTGGGGGTAGAATTTTAAAGAAAAAAGCGTAATTTAAAAAATTATGAAGTTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAAAAATTTGGAGATTTTTAAGATGTCGAATTTTCAGGATTTCAGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTCCTGGAATTTTGATATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTAAAATTCTAAGATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAATTCTGAAATTAAGAAATTCAGTAATTCAGAAATTCAAAAATCCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>501 267 101 60 54 17</canonical_bands>
                <polymorphic_bands>602 267 60 54 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCAAATCCCTATATTCAATC</pcr_primer_p1>
		<pcr_primer_p2>AAACCTAAATCTGGAAACTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCCAAATCCCTATATTCAATCTATAGAACCTATACATCTCTAATCTATGCAATAAATGAGAAACCGAGGTCACACTGAGAAAGAGATTATGTAATAGGTGTTACGGTAGTTACCTACTTAACGATGAGCAATCGGTCGTGAAAAGGAATTAGAATTAGAAGGGTCTAATGAATTATTGAAAGTTTTTGGGGGTAGAATTTTAAAGAAAAAAGCGTAATTTAAAAAATTATGAAGTTTCCAGATTTAGGTTT</canonical_amplicon>
		<polymorphic_amplicon>CCCAAATCCCTATATTCAATCTATAGAACCTATACATCTCTAATCTATGCAATAAATGAGAAACCGAGGTCACACTGAGAAAGAGATTATGTAATAGGTGTTACGGTAGTTACCTACTTAACGATGAGCAATCGGYCGTGAAAAGGAATTAGAATTAGAAGGGTCTAATGAATTATTGAAAGTTTTTGGGGGTAGAATTTTAAAGAAAAAAGCGTAATTTAAAAAATTATGAAGTTTCCAGATTTAGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35647</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>216310</contig_pos>
        <strand></strand>
        <context>GGGTCTAATG[A/G]ATTATTGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGATGAGCAATCGGTCGTGAAAAGGAATTAGAATTAGAAGGGTCTAATG</left_flank>
        <right_flank>ATTATTGAAAGTTTTTGGGGGTAGAATTTTAAAGAAAAAAGCGTAATTTA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNCGCGACTGGGAAAACCCGATATGCGCCTTTAAAGATGGTGCCACCCTTTCATCAAGCGCGAGGGGGCGCGCCAACTTTAAAGGCGCATATCTCAAAAACTAAAAAAGTTACAAAAAAGTTGTCAACTGCAAAAATGAAGCTCTTTTTTTTTAGTATATTCTGAAATTTTCAGAACATTTAGAAAATTTTTTAGTATCTTTTCATAGGCTTAAACTTGAGAACACCCAAGAATTTTTTTTTAAATTTTCGTTTTTTAAAAAGATTTTGGAGTGTAAAAACTATGGATATTTTCCAATTTTTCGATTCCAAATCATCCCAAATCCCTATATTCAATCTATAGAACCTATACATCTCTAATCTATGCAATAAATGAGAAACCGAGGTCACACTGAGAAAGAGATTATGTAATAGGTGTTACGGTAGTTACCTACTTAACGATGAGCAATCGGTCGTGAAAAGGAATTAGAATTAGAAGGGTCTAATGAATTATTGAAAGTTTTTGGGGGTAGAATTTTAAAGAAAAAAGCGTAATTTAAAAAATTATGAAGTTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAAAAATTTGGAGATTTTTAAGATGTCGAATTTTCAGGATTTCAGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTCCTGGAATTTTGATATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTAAAATTCTAAGATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAATTCTGAAATTAAGAAATTCAGTAATTCAGAAATTCAAAAATCCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTG</canonical>
            <polymorphic>NNNNNNNNNNNNNNNCGCGACTGGGAAAACCCGATATGCGCCTTTAAAGATGGTGCCACCCTTTCATCAAGCGCGAGGGGGCGCGCCAACTTTAAAGGCGCATATCTCAAAAACTAAAAAAGTTACAAAAAAGTTGTCAACTGCAAAAATGAAGCTCTTTTTTTTTAGTATATTCTGAAATTTTCAGAACATTTAGAAAATTTTTTAGTATCTTTTCATAGGCTTAAACTTGAGAACACCCAAGAATTTTTTTTTAAATTTTCGTTTTTTAAAAAGATTTTGGAGTGTAAAAACTATGGATATTTTCCAATTTTTCGATTCCAAATCATCCCAAATCCCTATATTCAATCTATAGAACCTATACATCTCTAATCTATGCAATAAATGAGAAACCGAGGTCACACTGAGAAAGAGATTATGTAATAGGTGTTACGGTAGTTACCTACTTAACGATGAGCAATCGGTCGTGAAAAGGAATTAGAATTAGAAGGGTCTAATGRATTATTGAAAGTTTTTGGGGGTAGAATTTTAAAGAAAAAAGCGTAATTTAAAAAATTATGAAGTTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAAAAATTTGGAGATTTTTAAGATGTCGAATTTTCAGGATTTCAGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTCCTGGAATTTTGATATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTAAAATTCTAAGATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAATTCTGAAATTAAGAAATTCAGTAATTCAGAAATTCAAAAATCCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>178 167 57 52 46 43 27 25 24 20 20 19 18 16 16 16 16 16 16 12 11 10 10 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 6</canonical_bands>
                <polymorphic_bands>178 167 57 52 46 43 43 27 24 20 20 19 16 16 16 16 16 16 12 11 10 10 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCAAATCCCTATATTCAATC</pcr_primer_p1>
		<pcr_primer_p2>AAACCTAAATCTGGAAACTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCCAAATCCCTATATTCAATCTATAGAACCTATACATCTCTAATCTATGCAATAAATGAGAAACCGAGGTCACACTGAGAAAGAGATTATGTAATAGGTGTTACGGTAGTTACCTACTTAACGATGAGCAATCGGTCGTGAAAAGGAATTAGAATTAGAAGGGTCTAATGAATTATTGAAAGTTTTTGGGGGTAGAATTTTAAAGAAAAAAGCGTAATTTAAAAAATTATGAAGTTTCCAGATTTAGGTTT</canonical_amplicon>
		<polymorphic_amplicon>CCCAAATCCCTATATTCAATCTATAGAACCTATACATCTCTAATCTATGCAATAAATGAGAAACCGAGGTCACACTGAGAAAGAGATTATGTAATAGGTGTTACGGTAGTTACCTACTTAACGATGAGCAATCGGTCGTGAAAAGGAATTAGAATTAGAAGGGTCTAATGRATTATTGAAAGTTTTTGGGGGTAGAATTTTAAAGAAAAAAGCGTAATTTAAAAAATTATGAAGTTTCCAGATTTAGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35648</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>216407</contig_pos>
        <strand></strand>
        <context>aagttctgaa[G/A]ttatagtttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTAAAAAATTATGAAGTTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAA</left_flank>
        <right_flank>TTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGAATTTTCGAG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGCATATCTCAAAAACTAAAAAAGTTACAAAAAAGTTGTCAACTGCAAAAATGAAGCTCTTTTTTTTTAGTATATTCTGAAATTTTCAGAACATTTAGAAAATTTTTTAGTATCTTTTCATAGGCTTAAACTTGAGAACACCCAAGAATTTTTTTTTAAATTTTCGTTTTTTAAAAAGATTTTGGAGTGTAAAAACTATGGATATTTTCCAATTTTTCGATTCCAAATCATCCCAAATCCCTATATTCAATCTATAGAACCTATACATCTCTAATCTATGCAATAAATGAGAAACCGAGGTCACACTGAGAAAGAGATTATGTAATAGGTGTTACGGTAGTTACCTACTTAACGATGAGCAATCGGTCGTGAAAAGGAATTAGAATTAGAAGGGTCTAATGAATTATTGAAAGTTTTTGGGGGTAGAATTTTAAAGAAAAAAGCGTAATTTAAAAAATTATGAAGTTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAAAAATTTGGAGATTTTTAAGATGTCGAATTTTCAGGATTTCAGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTCCTGGAATTTTGATATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTAAAATTCTAAGATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAATTCTGAAATTAAGAAATTCAGTAATTCAGAAATTCAAAAATCCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATGCGCTGAAATTCTGAAATTCAAAAATCCAAAATATCTGAAACTCTGATATTCT</canonical>
            <polymorphic>GCGCATATCTCAAAAACTAAAAAAGTTACAAAAAAGTTGTCAACTGCAAAAATGAAGCTCTTTTTTTTTAGTATATTCTGAAATTTTCAGAACATTTAGAAAATTTTTTAGTATCTTTTCATAGGCTTAAACTTGAGAACACCCAAGAATTTTTTTTTAAATTTTCGTTTTTTAAAAAGATTTTGGAGTGTAAAAACTATGGATATTTTCCAATTTTTCGATTCCAAATCATCCCAAATCCCTATATTCAATCTATAGAACCTATACATCTCTAATCTATGCAATAAATGAGAAACCGAGGTCACACTGAGAAAGAGATTATGTAATAGGTGTTACGGTAGTTACCTACTTAACGATGAGCAATCGGTCGTGAAAAGGAATTAGAATTAGAAGGGTCTAATGAATTATTGAAAGTTTTTGGGGGTAGAATTTTAAAGAAAAAAGCGTAATTTAAAAAATTATGAAGTTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAARTTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAAAAATTTGGAGATTTTTAAGATGTCGAATTTTCAGGATTTCAGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTCCTGGAATTTTGATATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTAAAATTCTAAGATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAATTCTGAAATTAAGAAATTCAGTAATTCAGAAATTCAAAAATCCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATGCGCTGAAATTCTGAAATTCAAAAATCCAAAATATCTGAAACTCTGATATTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGTTTTTGGGGGTAGAAT</pcr_primer_p1>
		<pcr_primer_p2>AGCCTATAATTTGGAAATTCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>706</pcr_amplicon_size>
		<canonical_amplicon>GAAAGTTTTTGGGGGTAGAATTTTAAAGAAAAAAGCGTAATTTAAAAAATTATGAAGTTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTCTAGG</canonical_amplicon>
		<polymorphic_amplicon>GAAAGTTTTTGGGGGTAGAATTTTAAAGAAAAAAGCGTAATTTAAAAAATTATGAAGTTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAARTTATAGTTTTTTGAATTTCTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35649</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>216426</contig_pos>
        <strand></strand>
        <context>ttttgaattt[C/T]taggaaagtt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTT</left_flank>
        <right_flank>TAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAA</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAGTTACAAAAAAGTTGTCAACTGCAAAAATGAAGCTCTTTTTTTTTAGTATATTCTGAAATTTTCAGAACATTTAGAAAATTTTTTAGTATCTTTTCATAGGCTTAAACTTGAGAACACCCAAGAATTTTTTTTTAAATTTTCGTTTTTTAAAAAGATTTTGGAGTGTAAAAACTATGGATATTTTCCAATTTTTCGATTCCAAATCATCCCAAATCCCTATATTCAATCTATAGAACCTATACATCTCTAATCTATGCAATAAATGAGAAACCGAGGTCACACTGAGAAAGAGATTATGTAATAGGTGTTACGGTAGTTACCTACTTAACGATGAGCAATCGGTCGTGAAAAGGAATTAGAATTAGAAGGGTCTAATGAATTATTGAAAGTTTTTGGGGGTAGAATTTTAAAGAAAAAAGCGTAATTTAAAAAATTATGAAGTTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAAAAATTTGGAGATTTTTAAGATGTCGAATTTTCAGGATTTCAGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTCCTGGAATTTTGATATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTAAAATTCTAAGATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAATTCTGAAATTAAGAAATTCAGTAATTCAGAAATTCAAAAATCCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATGCGCTGAAATTCTGAAATTCAAAAATCCAAAATATCTGAAACTCTGATATTCTGAAATTTTGAAATTCTGAA</canonical>
            <polymorphic>AAAAAGTTACAAAAAAGTTGTCAACTGCAAAAATGAAGCTCTTTTTTTTTAGTATATTCTGAAATTTTCAGAACATTTAGAAAATTTTTTAGTATCTTTTCATAGGCTTAAACTTGAGAACACCCAAGAATTTTTTTTTAAATTTTCGTTTTTTAAAAAGATTTTGGAGTGTAAAAACTATGGATATTTTCCAATTTTTCGATTCCAAATCATCCCAAATCCCTATATTCAATCTATAGAACCTATACATCTCTAATCTATGCAATAAATGAGAAACCGAGGTCACACTGAGAAAGAGATTATGTAATAGGTGTTACGGTAGTTACCTACTTAACGATGAGCAATCGGTCGTGAAAAGGAATTAGAATTAGAAGGGTCTAATGAATTATTGAAAGTTTTTGGGGGTAGAATTTTAAAGAAAAAAGCGTAATTTAAAAAATTATGAAGTTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTYTAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAAAAATTTGGAGATTTTTAAGATGTCGAATTTTCAGGATTTCAGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTCCTGGAATTTTGATATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTAAAATTCTAAGATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAATTCTGAAATTAAGAAATTCAGTAATTCAGAAATTCAAAAATCCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATGCGCTGAAATTCTGAAATTCAAAAATCCAAAATATCTGAAACTCTGATATTCTGAAATTTTGAAATTCTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAGATTTAGGTTTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>ATATTTGGGAGTTTAGGAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>670</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTYTAGGAAAGTTCAGGATTTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35650</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>216567</contig_pos>
        <strand></strand>
        <context>tttagaattt[C/T]ctggaatttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTT</left_flank>
        <right_flank>CTGGAATTTTGATATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTCGTTTTTTAAAAAGATTTTGGAGTGTAAAAACTATGGATATTTTCCAATTTTTCGATTCCAAATCATCCCAAATCCCTATATTCAATCTATAGAACCTATACATCTCTAATCTATGCAATAAATGAGAAACCGAGGTCACACTGAGAAAGAGATTATGTAATAGGTGTTACGGTAGTTACCTACTTAACGATGAGCAATCGGTCGTGAAAAGGAATTAGAATTAGAAGGGTCTAATGAATTATTGAAAGTTTTTGGGGGTAGAATTTTAAAGAAAAAAGCGTAATTTAAAAAATTATGAAGTTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAAAAATTTGGAGATTTTTAAGATGTCGAATTTTCAGGATTTCAGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTCCTGGAATTTTGATATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTAAAATTCTAAGATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAATTCTGAAATTAAGAAATTCAGTAATTCAGAAATTCAAAAATCCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATGCGCTGAAATTCTGAAATTCAAAAATCCAAAATATCTGAAACTCTGATATTCTGAAATTTTGAAATTCTGAAATTTTTGGATATTTTTTTTTGGAATTTCAGAAAGTTTCAAACTTAAAGAAATTCTTTTTTTTTCCAAAACTTTAAAGAATTTCCAAATTATAGGCTTTTTCCTAAACTCCCAAATATCTAAATTTTCAAAGATTACTGTAG</canonical>
            <polymorphic>ATTTTCGTTTTTTAAAAAGATTTTGGAGTGTAAAAACTATGGATATTTTCCAATTTTTCGATTCCAAATCATCCCAAATCCCTATATTCAATCTATAGAACCTATACATCTCTAATCTATGCAATAAATGAGAAACCGAGGTCACACTGAGAAAGAGATTATGTAATAGGTGTTACGGTAGTTACCTACTTAACGATGAGCAATCGGTCGTGAAAAGGAATTAGAATTAGAAGGGTCTAATGAATTATTGAAAGTTTTTGGGGGTAGAATTTTAAAGAAAAAAGCGTAATTTAAAAAATTATGAAGTTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAAAAATTTGGAGATTTTTAAGATGTCGAATTTTCAGGATTTCAGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTYCTGGAATTTTGATATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTAAAATTCTAAGATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAATTCTGAAATTAAGAAATTCAGTAATTCAGAAATTCAAAAATCCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATGCGCTGAAATTCTGAAATTCAAAAATCCAAAATATCTGAAACTCTGATATTCTGAAATTTTGAAATTCTGAAATTTTTGGATATTTTTTTTTGGAATTTCAGAAAGTTTCAAACTTAAAGAAATTCTTTTTTTTTCCAAAACTTTAAAGAATTTCCAAATTATAGGCTTTTTCCTAAACTCCCAAATATCTAAATTTTCAAAGATTACTGTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAGATTTAGGTTTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>ATATTTGGGAGTTTAGGAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>670</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAAAAATTTGGAGATTTTTAAGATGTCGAATTTTCAGGATTTCAGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTCCTGGAATTTTGATATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTAAAATTCTAAGATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAATTCTGAAATTAAGAAATTCAGTAATTCAGAAATTCAAAAATCCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATGCGCTGAAATTCTGAAATTCAAAAATCCAAAATATCTGAAACTCTGATATTCTGAAATTTTGAAATTCTGAAATTTTTGGATATTTTTTTTTGGAATTTCAGAAAGTTTCAAACTTAAAGAAATTCTTTTTTTTTCCAAAACTTTAAAGAATTTCCAAATTATAGGCTTTTTCCTAAACTCCCAAATAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAAAAATTTGGAGATTTTTAAGATGTCGAATTTTCAGGATTTCAGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTYCTGGAATTTTGATATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTAAAATTCTAAGATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAATTCTGAAATTAAGAAATTCAGTAATTCAGAAATTCAAAAATCCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATGCGCTGAAATTCTGAAATTCAAAAATCCAAAATATCTGAAACTCTGATATTCTGAAATTTTGAAATTCTGAAATTTTTGGATATTTTTTTTTGGAATTTCAGAAAGTTTCAAACTTAAAGAAATTCTTTTTTTTTCCAAAACTTTAAAGAATTTCCAAATTATAGGCTTTTTCCTAAACTCCCAAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35651</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>216578</contig_pos>
        <strand></strand>
        <context>ctggaatttt[G/C]rtattctgaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTCCTGGAATTTT</left_flank>
        <right_flank>ATATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTAAAATTCTAAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAAAGATTTTGGAGTGTAAAAACTATGGATATTTTCCAATTTTTCGATTCCAAATCATCCCAAATCCCTATATTCAATCTATAGAACCTATACATCTCTAATCTATGCAATAAATGAGAAACCGAGGTCACACTGAGAAAGAGATTATGTAATAGGTGTTACGGTAGTTACCTACTTAACGATGAGCAATCGGTCGTGAAAAGGAATTAGAATTAGAAGGGTCTAATGAATTATTGAAAGTTTTTGGGGGTAGAATTTTAAAGAAAAAAGCGTAATTTAAAAAATTATGAAGTTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAAAAATTTGGAGATTTTTAAGATGTCGAATTTTCAGGATTTCAGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTCCTGGAATTTTGATATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTAAAATTCTAAGATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAATTCTGAAATTAAGAAATTCAGTAATTCAGAAATTCAAAAATCCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATGCGCTGAAATTCTGAAATTCAAAAATCCAAAATATCTGAAACTCTGATATTCTGAAATTTTGAAATTCTGAAATTTTTGGATATTTTTTTTTGGAATTTCAGAAAGTTTCAAACTTAAAGAAATTCTTTTTTTTTCCAAAACTTTAAAGAATTTCCAAATTATAGGCTTTTTCCTAAACTCCCAAATATCTAAATTTTCAAAGATTACTGTAGCACCACCCGCC</canonical>
            <polymorphic>TTAAAAAGATTTTGGAGTGTAAAAACTATGGATATTTTCCAATTTTTCGATTCCAAATCATCCCAAATCCCTATATTCAATCTATAGAACCTATACATCTCTAATCTATGCAATAAATGAGAAACCGAGGTCACACTGAGAAAGAGATTATGTAATAGGTGTTACGGTAGTTACCTACTTAACGATGAGCAATCGGTCGTGAAAAGGAATTAGAATTAGAAGGGTCTAATGAATTATTGAAAGTTTTTGGGGGTAGAATTTTAAAGAAAAAAGCGTAATTTAAAAAATTATGAAGTTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAAAAATTTGGAGATTTTTAAGATGTCGAATTTTCAGGATTTCAGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTCCTGGAATTTTSATATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTAAAATTCTAAGATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAATTCTGAAATTAAGAAATTCAGTAATTCAGAAATTCAAAAATCCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATGCGCTGAAATTCTGAAATTCAAAAATCCAAAATATCTGAAACTCTGATATTCTGAAATTTTGAAATTCTGAAATTTTTGGATATTTTTTTTTGGAATTTCAGAAAGTTTCAAACTTAAAGAAATTCTTTTTTTTTCCAAAACTTTAAAGAATTTCCAAATTATAGGCTTTTTCCTAAACTCCCAAATATCTAAATTTTCAAAGATTACTGTAGCACCACCCGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAGATTTAGGTTTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>ATATTTGGGAGTTTAGGAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>670</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAAAAATTTGGAGATTTTTAAGATGTCGAATTTTCAGGATTTCAGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTCCTGGAATTTTGATATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTAAAATTCTAAGATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAATTCTGAAATTAAGAAATTCAGTAATTCAGAAATTCAAAAATCCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATGCGCTGAAATTCTGAAATTCAAAAATCCAAAATATCTGAAACTCTGATATTCTGAAATTTTGAAATTCTGAAATTTTTGGATATTTTTTTTTGGAATTTCAGAAAGTTTCAAACTTAAAGAAATTCTTTTTTTTTCCAAAACTTTAAAGAATTTCCAAATTATAGGCTTTTTCCTAAACTCCCAAATAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAAAAATTTGGAGATTTTTAAGATGTCGAATTTTCAGGATTTCAGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTCCTGGAATTTTSATATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTAAAATTCTAAGATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAATTCTGAAATTAAGAAATTCAGTAATTCAGAAATTCAAAAATCCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATGCGCTGAAATTCTGAAATTCAAAAATCCAAAATATCTGAAACTCTGATATTCTGAAATTTTGAAATTCTGAAATTTTTGGATATTTTTTTTTGGAATTTCAGAAAGTTTCAAACTTAAAGAAATTCTTTTTTTTTCCAAAACTTTAAAGAATTTCCAAATTATAGGCTTTTTCCTAAACTCCCAAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35652</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>216579</contig_pos>
        <strand></strand>
        <context>tggaatttts[A/G]tattctgaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTCCTGGAATTTTG</left_flank>
        <right_flank>TATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTAAAATTCTAAGA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAAAGATTTTGGAGTGTAAAAACTATGGATATTTTCCAATTTTTCGATTCCAAATCATCCCAAATCCCTATATTCAATCTATAGAACCTATACATCTCTAATCTATGCAATAAATGAGAAACCGAGGTCACACTGAGAAAGAGATTATGTAATAGGTGTTACGGTAGTTACCTACTTAACGATGAGCAATCGGTCGTGAAAAGGAATTAGAATTAGAAGGGTCTAATGAATTATTGAAAGTTTTTGGGGGTAGAATTTTAAAGAAAAAAGCGTAATTTAAAAAATTATGAAGTTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAAAAATTTGGAGATTTTTAAGATGTCGAATTTTCAGGATTTCAGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTCCTGGAATTTTGATATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTAAAATTCTAAGATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAATTCTGAAATTAAGAAATTCAGTAATTCAGAAATTCAAAAATCCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATGCGCTGAAATTCTGAAATTCAAAAATCCAAAATATCTGAAACTCTGATATTCTGAAATTTTGAAATTCTGAAATTTTTGGATATTTTTTTTTGGAATTTCAGAAAGTTTCAAACTTAAAGAAATTCTTTTTTTTTCCAAAACTTTAAAGAATTTCCAAATTATAGGCTTTTTCCTAAACTCCCAAATATCTAAATTTTCAAAGATTACTGTAGCACCACCCGCCC</canonical>
            <polymorphic>TAAAAAGATTTTGGAGTGTAAAAACTATGGATATTTTCCAATTTTTCGATTCCAAATCATCCCAAATCCCTATATTCAATCTATAGAACCTATACATCTCTAATCTATGCAATAAATGAGAAACCGAGGTCACACTGAGAAAGAGATTATGTAATAGGTGTTACGGTAGTTACCTACTTAACGATGAGCAATCGGTCGTGAAAAGGAATTAGAATTAGAAGGGTCTAATGAATTATTGAAAGTTTTTGGGGGTAGAATTTTAAAGAAAAAAGCGTAATTTAAAAAATTATGAAGTTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAAAAATTTGGAGATTTTTAAGATGTCGAATTTTCAGGATTTCAGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTCCTGGAATTTTGRTATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTAAAATTCTAAGATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAATTCTGAAATTAAGAAATTCAGTAATTCAGAAATTCAAAAATCCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATGCGCTGAAATTCTGAAATTCAAAAATCCAAAATATCTGAAACTCTGATATTCTGAAATTTTGAAATTCTGAAATTTTTGGATATTTTTTTTTGGAATTTCAGAAAGTTTCAAACTTAAAGAAATTCTTTTTTTTTCCAAAACTTTAAAGAATTTCCAAATTATAGGCTTTTTCCTAAACTCCCAAATATCTAAATTTTCAAAGATTACTGTAGCACCACCCGCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAGATTTAGGTTTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>ATATTTGGGAGTTTAGGAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>670</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAAAAATTTGGAGATTTTTAAGATGTCGAATTTTCAGGATTTCAGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTCCTGGAATTTTGATATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTAAAATTCTAAGATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAATTCTGAAATTAAGAAATTCAGTAATTCAGAAATTCAAAAATCCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATGCGCTGAAATTCTGAAATTCAAAAATCCAAAATATCTGAAACTCTGATATTCTGAAATTTTGAAATTCTGAAATTTTTGGATATTTTTTTTTGGAATTTCAGAAAGTTTCAAACTTAAAGAAATTCTTTTTTTTTCCAAAACTTTAAAGAATTTCCAAATTATAGGCTTTTTCCTAAACTCCCAAATAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAAAAATTTGGAGATTTTTAAGATGTCGAATTTTCAGGATTTCAGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTCCTGGAATTTTGRTATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTAAAATTCTAAGATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAATTCTGAAATTAAGAAATTCAGTAATTCAGAAATTCAAAAATCCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATGCGCTGAAATTCTGAAATTCAAAAATCCAAAATATCTGAAACTCTGATATTCTGAAATTTTGAAATTCTGAAATTTTTGGATATTTTTTTTTGGAATTTCAGAAAGTTTCAAACTTAAAGAAATTCTTTTTTTTTCCAAAACTTTAAAGAATTTCCAAATTATAGGCTTTTTCCTAAACTCCCAAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35653</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>216602</contig_pos>
        <strand></strand>
        <context>ctaaaattct[T/G]arattctgaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GAAAATTTAGAATTTCCTGGAATTTTGATATTCTGAAATTCTAAAATTCT</left_flank>
        <right_flank>AGATTCTGAAATTCTAAAATTCTAAGATTCTGAAATTCTAAAATTCTTAG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTATGGATATTTTCCAATTTTTCGATTCCAAATCATCCCAAATCCCTATATTCAATCTATAGAACCTATACATCTCTAATCTATGCAATAAATGAGAAACCGAGGTCACACTGAGAAAGAGATTATGTAATAGGTGTTACGGTAGTTACCTACTTAACGATGAGCAATCGGTCGTGAAAAGGAATTAGAATTAGAAGGGTCTAATGAATTATTGAAAGTTTTTGGGGGTAGAATTTTAAAGAAAAAAGCGTAATTTAAAAAATTATGAAGTTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAAAAATTTGGAGATTTTTAAGATGTCGAATTTTCAGGATTTCAGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTCCTGGAATTTTGATATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTAAAATTCTAAGATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAATTCTGAAATTAAGAAATTCAGTAATTCAGAAATTCAAAAATCCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATGCGCTGAAATTCTGAAATTCAAAAATCCAAAATATCTGAAACTCTGATATTCTGAAATTTTGAAATTCTGAAATTTTTGGATATTTTTTTTTGGAATTTCAGAAAGTTTCAAACTTAAAGAAATTCTTTTTTTTTCCAAAACTTTAAAGAATTTCCAAATTATAGGCTTTTTCCTAAACTCCCAAATATCTAAATTTTCAAAGATTACTGTAGCACCACCCGCCCACACCAGCCAACAAAAATCACCT</canonical>
            <polymorphic>ACTATGGATATTTTCCAATTTTTCGATTCCAAATCATCCCAAATCCCTATATTCAATCTATAGAACCTATACATCTCTAATCTATGCAATAAATGAGAAACCGAGGTCACACTGAGAAAGAGATTATGTAATAGGTGTTACGGTAGTTACCTACTTAACGATGAGCAATCGGTCGTGAAAAGGAATTAGAATTAGAAGGGTCTAATGAATTATTGAAAGTTTTTGGGGGTAGAATTTTAAAGAAAAAAGCGTAATTTAAAAAATTATGAAGTTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAAAAATTTGGAGATTTTTAAGATGTCGAATTTTCAGGATTTCAGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTCCTGGAATTTTGATATTCTGAAATTCTAAAATTCTKAGATTCTGAAATTCTAAAATTCTAAGATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAATTCTGAAATTAAGAAATTCAGTAATTCAGAAATTCAAAAATCCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATGCGCTGAAATTCTGAAATTCAAAAATCCAAAATATCTGAAACTCTGATATTCTGAAATTTTGAAATTCTGAAATTTTTGGATATTTTTTTTTGGAATTTCAGAAAGTTTCAAACTTAAAGAAATTCTTTTTTTTTCCAAAACTTTAAAGAATTTCCAAATTATAGGCTTTTTCCTAAACTCCCAAATATCTAAATTTTCAAAGATTACTGTAGCACCACCCGCCCACACCAGCCAACAAAAATCACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAGATTTAGGTTTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>ATATTTGGGAGTTTAGGAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>670</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAAAAATTTGGAGATTTTTAAGATGTCGAATTTTCAGGATTTCAGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTCCTGGAATTTTGATATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTAAAATTCTAAGATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAATTCTGAAATTAAGAAATTCAGTAATTCAGAAATTCAAAAATCCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATGCGCTGAAATTCTGAAATTCAAAAATCCAAAATATCTGAAACTCTGATATTCTGAAATTTTGAAATTCTGAAATTTTTGGATATTTTTTTTTGGAATTTCAGAAAGTTTCAAACTTAAAGAAATTCTTTTTTTTTCCAAAACTTTAAAGAATTTCCAAATTATAGGCTTTTTCCTAAACTCCCAAATAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAAAAATTTGGAGATTTTTAAGATGTCGAATTTTCAGGATTTCAGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTCCTGGAATTTTGATATTCTGAAATTCTAAAATTCTKAGATTCTGAAATTCTAAAATTCTAAGATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAATTCTGAAATTAAGAAATTCAGTAATTCAGAAATTCAAAAATCCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATGCGCTGAAATTCTGAAATTCAAAAATCCAAAATATCTGAAACTCTGATATTCTGAAATTTTGAAATTCTGAAATTTTTGGATATTTTTTTTTGGAATTTCAGAAAGTTTCAAACTTAAAGAAATTCTTTTTTTTTCCAAAACTTTAAAGAATTTCCAAATTATAGGCTTTTTCCTAAACTCCCAAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35654</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>216604</contig_pos>
        <strand></strand>
        <context>aaaattctka[G/A]attctgaaat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAATTTAGAATTTCCTGGAATTTTGATATTCTGAAATTCTAAAATTCTTA</left_flank>
        <right_flank>ATTCTGAAATTCTAAAATTCTAAGATTCTGAAATTCTAAAATTCTTAGAT</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGGATATTTTCCAATTTTTCGATTCCAAATCATCCCAAATCCCTATATTCAATCTATAGAACCTATACATCTCTAATCTATGCAATAAATGAGAAACCGAGGTCACACTGAGAAAGAGATTATGTAATAGGTGTTACGGTAGTTACCTACTTAACGATGAGCAATCGGTCGTGAAAAGGAATTAGAATTAGAAGGGTCTAATGAATTATTGAAAGTTTTTGGGGGTAGAATTTTAAAGAAAAAAGCGTAATTTAAAAAATTATGAAGTTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAAAAATTTGGAGATTTTTAAGATGTCGAATTTTCAGGATTTCAGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTCCTGGAATTTTGATATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTAAAATTCTAAGATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAATTCTGAAATTAAGAAATTCAGTAATTCAGAAATTCAAAAATCCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATGCGCTGAAATTCTGAAATTCAAAAATCCAAAATATCTGAAACTCTGATATTCTGAAATTTTGAAATTCTGAAATTTTTGGATATTTTTTTTTGGAATTTCAGAAAGTTTCAAACTTAAAGAAATTCTTTTTTTTTCCAAAACTTTAAAGAATTTCCAAATTATAGGCTTTTTCCTAAACTCCCAAATATCTAAATTTTCAAAGATTACTGTAGCACCACCCGCCCACACCAGCCAACAAAAATCACCTAA</canonical>
            <polymorphic>TATGGATATTTTCCAATTTTTCGATTCCAAATCATCCCAAATCCCTATATTCAATCTATAGAACCTATACATCTCTAATCTATGCAATAAATGAGAAACCGAGGTCACACTGAGAAAGAGATTATGTAATAGGTGTTACGGTAGTTACCTACTTAACGATGAGCAATCGGTCGTGAAAAGGAATTAGAATTAGAAGGGTCTAATGAATTATTGAAAGTTTTTGGGGGTAGAATTTTAAAGAAAAAAGCGTAATTTAAAAAATTATGAAGTTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAAAAATTTGGAGATTTTTAAGATGTCGAATTTTCAGGATTTCAGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTCCTGGAATTTTGATATTCTGAAATTCTAAAATTCTTARATTCTGAAATTCTAAAATTCTAAGATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAATTCTGAAATTAAGAAATTCAGTAATTCAGAAATTCAAAAATCCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATGCGCTGAAATTCTGAAATTCAAAAATCCAAAATATCTGAAACTCTGATATTCTGAAATTTTGAAATTCTGAAATTTTTGGATATTTTTTTTTGGAATTTCAGAAAGTTTCAAACTTAAAGAAATTCTTTTTTTTTCCAAAACTTTAAAGAATTTCCAAATTATAGGCTTTTTCCTAAACTCCCAAATATCTAAATTTTCAAAGATTACTGTAGCACCACCCGCCCACACCAGCCAACAAAAATCACCTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>440 386 110 24 24 16</canonical_bands>
                <polymorphic_bands>440 410 110 24 16</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>477 452 24 24 23</canonical_bands>
                <polymorphic_bands>501 452 24 23</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>477 452 24 24 23</canonical_bands>
                <polymorphic_bands>501 452 24 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAGATTTAGGTTTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>ATATTTGGGAGTTTAGGAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>670</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAAAAATTTGGAGATTTTTAAGATGTCGAATTTTCAGGATTTCAGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTCCTGGAATTTTGATATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTAAAATTCTAAGATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAATTCTGAAATTAAGAAATTCAGTAATTCAGAAATTCAAAAATCCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATGCGCTGAAATTCTGAAATTCAAAAATCCAAAATATCTGAAACTCTGATATTCTGAAATTTTGAAATTCTGAAATTTTTGGATATTTTTTTTTGGAATTTCAGAAAGTTTCAAACTTAAAGAAATTCTTTTTTTTTCCAAAACTTTAAAGAATTTCCAAATTATAGGCTTTTTCCTAAACTCCCAAATAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAAAAATTTGGAGATTTTTAAGATGTCGAATTTTCAGGATTTCAGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTCCTGGAATTTTGATATTCTGAAATTCTAAAATTCTTARATTCTGAAATTCTAAAATTCTAAGATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAATTCTGAAATTAAGAAATTCAGTAATTCAGAAATTCAAAAATCCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATGCGCTGAAATTCTGAAATTCAAAAATCCAAAATATCTGAAACTCTGATATTCTGAAATTTTGAAATTCTGAAATTTTTGGATATTTTTTTTTGGAATTTCAGAAAGTTTCAAACTTAAAGAAATTCTTTTTTTTTCCAAAACTTTAAAGAATTTCCAAATTATAGGCTTTTTCCTAAACTCCCAAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35655</snp_id>
        <super_contig>c009901095.Contig7</super_contig>
        <contig_pos>216628</contig_pos>
        <strand></strand>
        <context>aaaattctaa[G/A]attctgaaat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GATATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTAAAATTCTAA</left_flank>
        <right_flank>ATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAAT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCAAATCATCCCAAATCCCTATATTCAATCTATAGAACCTATACATCTCTAATCTATGCAATAAATGAGAAACCGAGGTCACACTGAGAAAGAGATTATGTAATAGGTGTTACGGTAGTTACCTACTTAACGATGAGCAATCGGTCGTGAAAAGGAATTAGAATTAGAAGGGTCTAATGAATTATTGAAAGTTTTTGGGGGTAGAATTTTAAAGAAAAAAGCGTAATTTAAAAAATTATGAAGTTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAAAAATTTGGAGATTTTTAAGATGTCGAATTTTCAGGATTTCAGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTCCTGGAATTTTGATATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTAAAATTCTAAGATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAATTCTGAAATTAAGAAATTCAGTAATTCAGAAATTCAAAAATCCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATGCGCTGAAATTCTGAAATTCAAAAATCCAAAATATCTGAAACTCTGATATTCTGAAATTTTGAAATTCTGAAATTTTTGGATATTTTTTTTTGGAATTTCAGAAAGTTTCAAACTTAAAGAAATTCTTTTTTTTTCCAAAACTTTAAAGAATTTCCAAATTATAGGCTTTTTCCTAAACTCCCAAATATCTAAATTTTCAAAGATTACTGTAGCACCACCCGCCCACACCAGCCAACAAAAATCACCTAAAAACCATTCAAACTGCTAACCTGC</canonical>
            <polymorphic>TTCCAAATCATCCCAAATCCCTATATTCAATCTATAGAACCTATACATCTCTAATCTATGCAATAAATGAGAAACCGAGGTCACACTGAGAAAGAGATTATGTAATAGGTGTTACGGTAGTTACCTACTTAACGATGAGCAATCGGTCGTGAAAAGGAATTAGAATTAGAAGGGTCTAATGAATTATTGAAAGTTTTTGGGGGTAGAATTTTAAAGAAAAAAGCGTAATTTAAAAAATTATGAAGTTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAAAAATTTGGAGATTTTTAAGATGTCGAATTTTCAGGATTTCAGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTCCTGGAATTTTGATATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTAAAATTCTAARATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAATTCTGAAATTAAGAAATTCAGTAATTCAGAAATTCAAAAATCCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATGCGCTGAAATTCTGAAATTCAAAAATCCAAAATATCTGAAACTCTGATATTCTGAAATTTTGAAATTCTGAAATTTTTGGATATTTTTTTTTGGAATTTCAGAAAGTTTCAAACTTAAAGAAATTCTTTTTTTTTCCAAAACTTTAAAGAATTTCCAAATTATAGGCTTTTTCCTAAACTCCCAAATATCTAAATTTTCAAAGATTACTGTAGCACCACCCGCCCACACCAGCCAACAAAAATCACCTAAAAACCATTCAAACTGCTAACCTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>464 386 86 24 24 16</canonical_bands>
                <polymorphic_bands>464 386 86 48 16</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>476 476 24 24</canonical_bands>
                <polymorphic_bands>476 476 48</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>476 476 24 24</canonical_bands>
                <polymorphic_bands>476 476 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCCAGATTTAGGTTTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>ATATTTGGGAGTTTAGGAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>670</pcr_amplicon_size>
		<canonical_amplicon>TTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAAAAATTTGGAGATTTTTAAGATGTCGAATTTTCAGGATTTCAGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTCCTGGAATTTTGATATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTAAAATTCTAAGATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAATTCTGAAATTAAGAAATTCAGTAATTCAGAAATTCAAAAATCCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATGCGCTGAAATTCTGAAATTCAAAAATCCAAAATATCTGAAACTCTGATATTCTGAAATTTTGAAATTCTGAAATTTTTGGATATTTTTTTTTGGAATTTCAGAAAGTTTCAAACTTAAAGAAATTCTTTTTTTTTCCAAAACTTTAAAGAATTTCCAAATTATAGGCTTTTTCCTAAACTCCCAAATAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCCAGATTTAGGTTTTTGAAAAAGTTCTGAAGTTATAGTTTTTTGAATTTCTAGGAAAGTTCAGGATTTCTGAATTTTCGAGATTTTTTGAAATTTCAGAAAAATTTGGAGATTTTTAAGATGTCGAATTTTCAGGATTTCAGAAAATCAGATTTTTTCGAATATTTCGAATTTCTGAAAATTTAGAATTTCCTGGAATTTTGATATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTAAAATTCTAARATTCTGAAATTCTAAAATTCTTAGATTCTGAAATTCTGAGTTTCTGAAATTCTGAAATTAAGAAATTCAGTAATTCAGAAATTCAAAAATCCAAAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAATGCGCTGAAATTCTGAAATTCAAAAATCCAAAATATCTGAAACTCTGATATTCTGAAATTTTGAAATTCTGAAATTTTTGGATATTTTTTTTTGGAATTTCAGAAAGTTTCAAACTTAAAGAAATTCTTTTTTTTTCCAAAACTTTAAAGAATTTCCAAATTATAGGCTTTTTCCTAAACTCCCAAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35656</snp_id>
        <super_contig>c010001306.Contig1</super_contig>
        <contig_pos>31326</contig_pos>
        <strand>+</strand>
        <context>TATAGGCTGG[A/G]GGCGGGACTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGATGACTGGGTAATGAATGACAATTTTTGAGTTCCTTATATAGGCTGG</left_flank>
        <right_flank>GGCGGGACTTAGTGGCCCGCAGACTTGCCCCGCCCACAATATCTCGTCGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCAAACATACACAGTCACATCTTTCAAGAATTGATGAATTTGGTATTCCAATGTATTATGATCCTCCTCCAATAATCCATTCTCTCCTTGTTTTGGGAAATCATCGTTCTCTCCGAATTGAGTGAGCAATCCCATTTGGGTCATACGTGGAAACATGTTGAGTAGAGAATCCTGATGATTGATTGAATTTCCGATTTGAGTTCATTGAAAGCAATTGTGAACCACATTGGAAGACGAGGACGTTCTGGATTCTCTCCTTGAATTTCAATACTGTGCTCCAGGAAGAGATCCGTTTCGTTTCGAAGATATTGAGCAGAAGCTCTCACGCGCTTCTTGATTCCAATGTTGTCTTCTTCGAGTTTGACTCCATGGATTTCAGCCATAAGAGAACGGAAATCGAACATCATAGTTAGAGAGAATAAGTGAGACAATAAGAGAGAGCTAGTCGAGATGACTGGGTAATGAATGACAATTTTTGAGTTCCTTATATAGGCTGGAGGCGGGACTTAGTGGCCCGCAGACTTGCCCCGCCCACAATATCTCGTCGTCTGGATGTCTGCCTGGGAGGGTTAGCGTGCTCCTAGGAAGAAATCACAGGTGAAGCTATTTACAGCCAAAAGTGAAGAAGCTAGAAAATTTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTCACCCATGTTGGCAAAGTAGTTTTTATCTACCAATCAAAAAATACACTTCGAAAAAAAATGTGTTTCAGGAAACAGGGAAGGTTTGAAGGTTTGCTGCAGATATTAATTCTTCATTTCA</canonical>
            <polymorphic>TTCCAAACATACACAGTCACATCTTTCAAGAATTGATGAATTTGGTATTCCAATGTATTATGATCCTCCTCCAATAATCCATTCTCTCCTTGTTTTGGGAAATCATCGTTCTCTCCGAATTGAGTGAGCAATCCCATTTGGGTCATACGTGGAAACATGTTGAGTAGAGAATCCTGATGATTGATTGAATTTCCGATTTGAGTTCATTGAAAGCAATTGTGAACCACATTGGAAGACGAGGACGTTCTGGATTCTCTCCTTGAATTTCAATACTGTGCTCCAGGAAGAGATCCGTTTCGTTTCGAAGATATTGAGCAGAAGCTCTCACGCGCTTCTTGATTCCAATGTTGTCTTCTTCGAGTTTGACTCCATGGATTTCAGCCATAAGAGAACGGAAATCGAACATCATAGTTAGAGAGAATAAGTGAGACAATAAGAGAGAGCTAGTCGAGATGACTGGGTAATGAATGACAATTTTTGAGTTCCTTATATAGGCTGGRGGCGGGACTTAGTGGCCCGCAGACTTGCCCCGCCCACAATATCTCGTCGTCTGGATGTCTGCCTGGGAGGGTTAGCGTGCTCCTAGGAAGAAATCACAGGTGAAGCTATTTACAGCCAAAAGTGAAGAAGCTAGAAAATTTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTCACCCATGTTGGCAAAGTAGTTTTTATCTACCAATCAAAAAATACACTTCGAAAAAAAATGTGTTTCAGGAAACAGGGAAGGTTTGAAGGTTTGCTGCAGATATTAATTCTTCATTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGAGAGAGCTAGTCGAGATGA</pcr_primer_p1>
		<pcr_primer_p2>CCCCTATGGTAATTTTTAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAAGAGAGAGCTAGTCGAGATGACTGGGTAATGAATGACAATTTTTGAGTTCCTTATATAGGCTGGAGGCGGGACTTAGTGGCCCGCAGACTTGCCCCGCCCACAATATCTCGTCGTCTGGATGTCTGCCTGGGAGGGTTAGCGTGCTCCTAGGAAGAAATCACAGGTGAAGCTATTTACAGCCAAAAGTGAAGAAGCTAGAAAATTTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGG</canonical_amplicon>
		<polymorphic_amplicon>TAAGAGAGAGCTAGTCGAGATGACTGGGTAATGAATGACAATTTTTGAGTTCCTTATATAGGCTGGRGGCGGGACTTAGTGGCCCGCAGACTTGCCCCGCCCACAATATCTCGTCGTCTGGATGTCTGCCTGGGAGGGTTAGCGTGCTCCTAGGAAGAAATCACAGGTGAAGCTATTTACAGCCAAAAGTGAAGAAGCTAGAAAATTTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35657</snp_id>
        <super_contig>c010001306.Contig1</super_contig>
        <contig_pos>31434</contig_pos>
        <strand>+</strand>
        <context>AGGTGAAGCT[A/C]TTTACAGCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTGCCTGGGAGGGTTAGCGTGCTCCTAGGAAGAAATCACAGGTGAAGCT</left_flank>
        <right_flank>TTTACAGCCAAAAGTGAAGAAGCTAGAAAATTTTTGAAAACACTATTCGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTCTCCGAATTGAGTGAGCAATCCCATTTGGGTCATACGTGGAAACATGTTGAGTAGAGAATCCTGATGATTGATTGAATTTCCGATTTGAGTTCATTGAAAGCAATTGTGAACCACATTGGAAGACGAGGACGTTCTGGATTCTCTCCTTGAATTTCAATACTGTGCTCCAGGAAGAGATCCGTTTCGTTTCGAAGATATTGAGCAGAAGCTCTCACGCGCTTCTTGATTCCAATGTTGTCTTCTTCGAGTTTGACTCCATGGATTTCAGCCATAAGAGAACGGAAATCGAACATCATAGTTAGAGAGAATAAGTGAGACAATAAGAGAGAGCTAGTCGAGATGACTGGGTAATGAATGACAATTTTTGAGTTCCTTATATAGGCTGGAGGCGGGACTTAGTGGCCCGCAGACTTGCCCCGCCCACAATATCTCGTCGTCTGGATGTCTGCCTGGGAGGGTTAGCGTGCTCCTAGGAAGAAATCACAGGTGAAGCTATTTACAGCCAAAAGTGAAGAAGCTAGAAAATTTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTCACCCATGTTGGCAAAGTAGTTTTTATCTACCAATCAAAAAATACACTTCGAAAAAAAATGTGTTTCAGGAAACAGGGAAGGTTTGAAGGTTTGCTGCAGATATTAATTCTTCATTTCACTTTCGTTTATATCATTTTCCTCAAAGTGAGCTCTTCTTTCTGAATTTAAATCATTGAAACGAAAATTTTTGAAACTTCTACTACCTCTGAGACACCAATTAATAAAC</canonical>
            <polymorphic>TTCTCTCCGAATTGAGTGAGCAATCCCATTTGGGTCATACGTGGAAACATGTTGAGTAGAGAATCCTGATGATTGATTGAATTTCCGATTTGAGTTCATTGAAAGCAATTGTGAACCACATTGGAAGACGAGGACGTTCTGGATTCTCTCCTTGAATTTCAATACTGTGCTCCAGGAAGAGATCCGTTTCGTTTCGAAGATATTGAGCAGAAGCTCTCACGCGCTTCTTGATTCCAATGTTGTCTTCTTCGAGTTTGACTCCATGGATTTCAGCCATAAGAGAACGGAAATCGAACATCATAGTTAGAGAGAATAAGTGAGACAATAAGAGAGAGCTAGTCGAGATGACTGGGTAATGAATGACAATTTTTGAGTTCCTTATATAGGCTGGAGGCGGGACTTAGTGGCCCGCAGACTTGCCCCGCCCACAATATCTCGTCGTCTGGATGTCTGCCTGGGAGGGTTAGCGTGCTCCTAGGAAGAAATCACAGGTGAAGCTMTTTACAGCCAAAAGTGAAGAAGCTAGAAAATTTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTCACCCATGTTGGCAAAGTAGTTTTTATCTACCAATCAAAAAATACACTTCGAAAAAAAATGTGTTTCAGGAAACAGGGAAGGTTTGAAGGTTTGCTGCAGATATTAATTCTTCATTTCACTTTCGTTTATATCATTTTCCTCAAAGTGAGCTCTTCTTTCTGAATTTAAATCATTGAAACGAAAATTTTTGAAACTTCTACTACCTCTGAGACACCAATTAATAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGAGAGAGCTAGTCGAGATGA</pcr_primer_p1>
		<pcr_primer_p2>CCCCTATGGTAATTTTTAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAAGAGAGAGCTAGTCGAGATGACTGGGTAATGAATGACAATTTTTGAGTTCCTTATATAGGCTGGAGGCGGGACTTAGTGGCCCGCAGACTTGCCCCGCCCACAATATCTCGTCGTCTGGATGTCTGCCTGGGAGGGTTAGCGTGCTCCTAGGAAGAAATCACAGGTGAAGCTATTTACAGCCAAAAGTGAAGAAGCTAGAAAATTTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGG</canonical_amplicon>
		<polymorphic_amplicon>TAAGAGAGAGCTAGTCGAGATGACTGGGTAATGAATGACAATTTTTGAGTTCCTTATATAGGCTGGAGGCGGGACTTAGTGGCCCGCAGACTTGCCCCGCCCACAATATCTCGTCGTCTGGATGTCTGCCTGGGAGGGTTAGCGTGCTCCTAGGAAGAAATCACAGGTGAAGCTMTTTACAGCCAAAAGTGAAGAAGCTAGAAAATTTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35658</snp_id>
        <super_contig>c010001306.Contig1</super_contig>
        <contig_pos>31522</contig_pos>
        <strand>+</strand>
        <context>TGATTTTTCA[G/T]AACTTGTCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCA</left_flank>
        <right_flank>AACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAGTTCATTGAAAGCAATTGTGAACCACATTGGAAGACGAGGACGTTCTGGATTCTCTCCTTGAATTTCAATACTGTGCTCCAGGAAGAGATCCGTTTCGTTTCGAAGATATTGAGCAGAAGCTCTCACGCGCTTCTTGATTCCAATGTTGTCTTCTTCGAGTTTGACTCCATGGATTTCAGCCATAAGAGAACGGAAATCGAACATCATAGTTAGAGAGAATAAGTGAGACAATAAGAGAGAGCTAGTCGAGATGACTGGGTAATGAATGACAATTTTTGAGTTCCTTATATAGGCTGGAGGCGGGACTTAGTGGCCCGCAGACTTGCCCCGCCCACAATATCTCGTCGTCTGGATGTCTGCCTGGGAGGGTTAGCGTGCTCCTAGGAAGAAATCACAGGTGAAGCTATTTACAGCCAAAAGTGAAGAAGCTAGAAAATTTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTCACCCATGTTGGCAAAGTAGTTTTTATCTACCAATCAAAAAATACACTTCGAAAAAAAATGTGTTTCAGGAAACAGGGAAGGTTTGAAGGTTTGCTGCAGATATTAATTCTTCATTTCACTTTCGTTTATATCATTTTCCTCAAAGTGAGCTCTTCTTTCTGAATTTAAATCATTGAAACGAAAATTTTTGAAACTTCTACTACCTCTGAGACACCAATTAATAAACTGTTGGGATCTAAAATTATTTATATTCTCTAACAGGAAATTGTACTGTTTCGAGTAGTAAACAAGTCGAAAGTGTTTGGGCTATTTTG</canonical>
            <polymorphic>TTTGAGTTCATTGAAAGCAATTGTGAACCACATTGGAAGACGAGGACGTTCTGGATTCTCTCCTTGAATTTCAATACTGTGCTCCAGGAAGAGATCCGTTTCGTTTCGAAGATATTGAGCAGAAGCTCTCACGCGCTTCTTGATTCCAATGTTGTCTTCTTCGAGTTTGACTCCATGGATTTCAGCCATAAGAGAACGGAAATCGAACATCATAGTTAGAGAGAATAAGTGAGACAATAAGAGAGAGCTAGTCGAGATGACTGGGTAATGAATGACAATTTTTGAGTTCCTTATATAGGCTGGAGGCGGGACTTAGTGGCCCGCAGACTTGCCCCGCCCACAATATCTCGTCGTCTGGATGTCTGCCTGGGAGGGTTAGCGTGCTCCTAGGAAGAAATCACAGGTGAAGCTATTTACAGCCAAAAGTGAAGAAGCTAGAAAATTTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCAKAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTCACCCATGTTGGCAAAGTAGTTTTTATCTACCAATCAAAAAATACACTTCGAAAAAAAATGTGTTTCAGGAAACAGGGAAGGTTTGAAGGTTTGCTGCAGATATTAATTCTTCATTTCACTTTCGTTTATATCATTTTCCTCAAAGTGAGCTCTTCTTTCTGAATTTAAATCATTGAAACGAAAATTTTTGAAACTTCTACTACCTCTGAGACACCAATTAATAAACTGTTGGGATCTAAAATTATTTATATTCTCTAACAGGAAATTGTACTGTTTCGAGTAGTAAACAAGTCGAAAGTGTTTGGGCTATTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAAAACACTATTCGGTTTA</pcr_primer_p1>
		<pcr_primer_p2>GAGAACCAGCTCCTTTTACTATT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCAKAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35659</snp_id>
        <super_contig>c010001306.Contig1</super_contig>
        <contig_pos>31551</contig_pos>
        <strand>+</strand>
        <context>TTGGGTTGAC[A/G]TRCATTYCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGAC</left_flank>
        <right_flank>TACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATTGGAAGACGAGGACGTTCTGGATTCTCTCCTTGAATTTCAATACTGTGCTCCAGGAAGAGATCCGTTTCGTTTCGAAGATATTGAGCAGAAGCTCTCACGCGCTTCTTGATTCCAATGTTGTCTTCTTCGAGTTTGACTCCATGGATTTCAGCCATAAGAGAACGGAAATCGAACATCATAGTTAGAGAGAATAAGTGAGACAATAAGAGAGAGCTAGTCGAGATGACTGGGTAATGAATGACAATTTTTGAGTTCCTTATATAGGCTGGAGGCGGGACTTAGTGGCCCGCAGACTTGCCCCGCCCACAATATCTCGTCGTCTGGATGTCTGCCTGGGAGGGTTAGCGTGCTCCTAGGAAGAAATCACAGGTGAAGCTATTTACAGCCAAAAGTGAAGAAGCTAGAAAATTTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTCACCCATGTTGGCAAAGTAGTTTTTATCTACCAATCAAAAAATACACTTCGAAAAAAAATGTGTTTCAGGAAACAGGGAAGGTTTGAAGGTTTGCTGCAGATATTAATTCTTCATTTCACTTTCGTTTATATCATTTTCCTCAAAGTGAGCTCTTCTTTCTGAATTTAAATCATTGAAACGAAAATTTTTGAAACTTCTACTACCTCTGAGACACCAATTAATAAACTGTTGGGATCTAAAATTATTTATATTCTCTAACAGGAAATTGTACTGTTTCGAGTAGTAAACAAGTCGAAAGTGTTTGGGCTATTTTGTAATCAGTTTGGCCACAGAGAACCTCATT</canonical>
            <polymorphic>ACATTGGAAGACGAGGACGTTCTGGATTCTCTCCTTGAATTTCAATACTGTGCTCCAGGAAGAGATCCGTTTCGTTTCGAAGATATTGAGCAGAAGCTCTCACGCGCTTCTTGATTCCAATGTTGTCTTCTTCGAGTTTGACTCCATGGATTTCAGCCATAAGAGAACGGAAATCGAACATCATAGTTAGAGAGAATAAGTGAGACAATAAGAGAGAGCTAGTCGAGATGACTGGGTAATGAATGACAATTTTTGAGTTCCTTATATAGGCTGGAGGCGGGACTTAGTGGCCCGCAGACTTGCCCCGCCCACAATATCTCGTCGTCTGGATGTCTGCCTGGGAGGGTTAGCGTGCTCCTAGGAAGAAATCACAGGTGAAGCTATTTACAGCCAAAAGTGAAGAAGCTAGAAAATTTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACRTACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTCACCCATGTTGGCAAAGTAGTTTTTATCTACCAATCAAAAAATACACTTCGAAAAAAAATGTGTTTCAGGAAACAGGGAAGGTTTGAAGGTTTGCTGCAGATATTAATTCTTCATTTCACTTTCGTTTATATCATTTTCCTCAAAGTGAGCTCTTCTTTCTGAATTTAAATCATTGAAACGAAAATTTTTGAAACTTCTACTACCTCTGAGACACCAATTAATAAACTGTTGGGATCTAAAATTATTTATATTCTCTAACAGGAAATTGTACTGTTTCGAGTAGTAAACAAGTCGAAAGTGTTTGGGCTATTTTGTAATCAGTTTGGCCACAGAGAACCTCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 425 74</canonical_bands>
                <polymorphic_bands>926 74</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>502 481 17</canonical_bands>
                <polymorphic_bands>983 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAAAACACTATTCGGTTTA</pcr_primer_p1>
		<pcr_primer_p2>GAGAACCAGCTCCTTTTACTATT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACRTACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35660</snp_id>
        <super_contig>c010001306.Contig1</super_contig>
        <contig_pos>31553</contig_pos>
        <strand>+</strand>
        <context>GGGTTGACRT[A/G]CATTYCTGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGT</left_flank>
        <right_flank>CATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGGAAGACGAGGACGTTCTGGATTCTCTCCTTGAATTTCAATACTGTGCTCCAGGAAGAGATCCGTTTCGTTTCGAAGATATTGAGCAGAAGCTCTCACGCGCTTCTTGATTCCAATGTTGTCTTCTTCGAGTTTGACTCCATGGATTTCAGCCATAAGAGAACGGAAATCGAACATCATAGTTAGAGAGAATAAGTGAGACAATAAGAGAGAGCTAGTCGAGATGACTGGGTAATGAATGACAATTTTTGAGTTCCTTATATAGGCTGGAGGCGGGACTTAGTGGCCCGCAGACTTGCCCCGCCCACAATATCTCGTCGTCTGGATGTCTGCCTGGGAGGGTTAGCGTGCTCCTAGGAAGAAATCACAGGTGAAGCTATTTACAGCCAAAAGTGAAGAAGCTAGAAAATTTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTCACCCATGTTGGCAAAGTAGTTTTTATCTACCAATCAAAAAATACACTTCGAAAAAAAATGTGTTTCAGGAAACAGGGAAGGTTTGAAGGTTTGCTGCAGATATTAATTCTTCATTTCACTTTCGTTTATATCATTTTCCTCAAAGTGAGCTCTTCTTTCTGAATTTAAATCATTGAAACGAAAATTTTTGAAACTTCTACTACCTCTGAGACACCAATTAATAAACTGTTGGGATCTAAAATTATTTATATTCTCTAACAGGAAATTGTACTGTTTCGAGTAGTAAACAAGTCGAAAGTGTTTGGGCTATTTTGTAATCAGTTTGGCCACAGAGAACCTCATTGA</canonical>
            <polymorphic>ATTGGAAGACGAGGACGTTCTGGATTCTCTCCTTGAATTTCAATACTGTGCTCCAGGAAGAGATCCGTTTCGTTTCGAAGATATTGAGCAGAAGCTCTCACGCGCTTCTTGATTCCAATGTTGTCTTCTTCGAGTTTGACTCCATGGATTTCAGCCATAAGAGAACGGAAATCGAACATCATAGTTAGAGAGAATAAGTGAGACAATAAGAGAGAGCTAGTCGAGATGACTGGGTAATGAATGACAATTTTTGAGTTCCTTATATAGGCTGGAGGCGGGACTTAGTGGCCCGCAGACTTGCCCCGCCCACAATATCTCGTCGTCTGGATGTCTGCCTGGGAGGGTTAGCGTGCTCCTAGGAAGAAATCACAGGTGAAGCTATTTACAGCCAAAAGTGAAGAAGCTAGAAAATTTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTRCATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTCACCCATGTTGGCAAAGTAGTTTTTATCTACCAATCAAAAAATACACTTCGAAAAAAAATGTGTTTCAGGAAACAGGGAAGGTTTGAAGGTTTGCTGCAGATATTAATTCTTCATTTCACTTTCGTTTATATCATTTTCCTCAAAGTGAGCTCTTCTTTCTGAATTTAAATCATTGAAACGAAAATTTTTGAAACTTCTACTACCTCTGAGACACCAATTAATAAACTGTTGGGATCTAAAATTATTTATATTCTCTAACAGGAAATTGTACTGTTTCGAGTAGTAAACAAGTCGAAAGTGTTTGGGCTATTTTGTAATCAGTTTGGCCACAGAGAACCTCATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 425 76</canonical_bands>
                <polymorphic_bands>924 76</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAAAACACTATTCGGTTTA</pcr_primer_p1>
		<pcr_primer_p2>GAGAACCAGCTCCTTTTACTATT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTRCATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35661</snp_id>
        <super_contig>c010001306.Contig1</super_contig>
        <contig_pos>31558</contig_pos>
        <strand>+</strand>
        <context>GACRTRCATT[C/T]CTGTGGACTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATT</left_flank>
        <right_flank>CTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGACGAGGACGTTCTGGATTCTCTCCTTGAATTTCAATACTGTGCTCCAGGAAGAGATCCGTTTCGTTTCGAAGATATTGAGCAGAAGCTCTCACGCGCTTCTTGATTCCAATGTTGTCTTCTTCGAGTTTGACTCCATGGATTTCAGCCATAAGAGAACGGAAATCGAACATCATAGTTAGAGAGAATAAGTGAGACAATAAGAGAGAGCTAGTCGAGATGACTGGGTAATGAATGACAATTTTTGAGTTCCTTATATAGGCTGGAGGCGGGACTTAGTGGCCCGCAGACTTGCCCCGCCCACAATATCTCGTCGTCTGGATGTCTGCCTGGGAGGGTTAGCGTGCTCCTAGGAAGAAATCACAGGTGAAGCTATTTACAGCCAAAAGTGAAGAAGCTAGAAAATTTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTCACCCATGTTGGCAAAGTAGTTTTTATCTACCAATCAAAAAATACACTTCGAAAAAAAATGTGTTTCAGGAAACAGGGAAGGTTTGAAGGTTTGCTGCAGATATTAATTCTTCATTTCACTTTCGTTTATATCATTTTCCTCAAAGTGAGCTCTTCTTTCTGAATTTAAATCATTGAAACGAAAATTTTTGAAACTTCTACTACCTCTGAGACACCAATTAATAAACTGTTGGGATCTAAAATTATTTATATTCTCTAACAGGAAATTGTACTGTTTCGAGTAGTAAACAAGTCGAAAGTGTTTGGGCTATTTTGTAATCAGTTTGGCCACAGAGAACCTCATTGATCAAG</canonical>
            <polymorphic>AAGACGAGGACGTTCTGGATTCTCTCCTTGAATTTCAATACTGTGCTCCAGGAAGAGATCCGTTTCGTTTCGAAGATATTGAGCAGAAGCTCTCACGCGCTTCTTGATTCCAATGTTGTCTTCTTCGAGTTTGACTCCATGGATTTCAGCCATAAGAGAACGGAAATCGAACATCATAGTTAGAGAGAATAAGTGAGACAATAAGAGAGAGCTAGTCGAGATGACTGGGTAATGAATGACAATTTTTGAGTTCCTTATATAGGCTGGAGGCGGGACTTAGTGGCCCGCAGACTTGCCCCGCCCACAATATCTCGTCGTCTGGATGTCTGCCTGGGAGGGTTAGCGTGCTCCTAGGAAGAAATCACAGGTGAAGCTATTTACAGCCAAAAGTGAAGAAGCTAGAAAATTTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTYCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTCACCCATGTTGGCAAAGTAGTTTTTATCTACCAATCAAAAAATACACTTCGAAAAAAAATGTGTTTCAGGAAACAGGGAAGGTTTGAAGGTTTGCTGCAGATATTAATTCTTCATTTCACTTTCGTTTATATCATTTTCCTCAAAGTGAGCTCTTCTTTCTGAATTTAAATCATTGAAACGAAAATTTTTGAAACTTCTACTACCTCTGAGACACCAATTAATAAACTGTTGGGATCTAAAATTATTTATATTCTCTAACAGGAAATTGTACTGTTTCGAGTAGTAAACAAGTCGAAAGTGTTTGGGCTATTTTGTAATCAGTTTGGCCACAGAGAACCTCATTGATCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAAAACACTATTCGGTTTA</pcr_primer_p1>
		<pcr_primer_p2>GAGAACCAGCTCCTTTTACTATT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTYCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35662</snp_id>
        <super_contig>c010001306.Contig1</super_contig>
        <contig_pos>31571</contig_pos>
        <strand>+</strand>
        <context>GTGGACTTAT[A/T]AAGAAACATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTAT</left_flank>
        <right_flank>AAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGGATTCTCTCCTTGAATTTCAATACTGTGCTCCAGGAAGAGATCCGTTTCGTTTCGAAGATATTGAGCAGAAGCTCTCACGCGCTTCTTGATTCCAATGTTGTCTTCTTCGAGTTTGACTCCATGGATTTCAGCCATAAGAGAACGGAAATCGAACATCATAGTTAGAGAGAATAAGTGAGACAATAAGAGAGAGCTAGTCGAGATGACTGGGTAATGAATGACAATTTTTGAGTTCCTTATATAGGCTGGAGGCGGGACTTAGTGGCCCGCAGACTTGCCCCGCCCACAATATCTCGTCGTCTGGATGTCTGCCTGGGAGGGTTAGCGTGCTCCTAGGAAGAAATCACAGGTGAAGCTATTTACAGCCAAAAGTGAAGAAGCTAGAAAATTTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTCACCCATGTTGGCAAAGTAGTTTTTATCTACCAATCAAAAAATACACTTCGAAAAAAAATGTGTTTCAGGAAACAGGGAAGGTTTGAAGGTTTGCTGCAGATATTAATTCTTCATTTCACTTTCGTTTATATCATTTTCCTCAAAGTGAGCTCTTCTTTCTGAATTTAAATCATTGAAACGAAAATTTTTGAAACTTCTACTACCTCTGAGACACCAATTAATAAACTGTTGGGATCTAAAATTATTTATATTCTCTAACAGGAAATTGTACTGTTTCGAGTAGTAAACAAGTCGAAAGTGTTTGGGCTATTTTGTAATCAGTTTGGCCACAGAGAACCTCATTGATCAAGTTGTAAAGATATT</canonical>
            <polymorphic>TCTGGATTCTCTCCTTGAATTTCAATACTGTGCTCCAGGAAGAGATCCGTTTCGTTTCGAAGATATTGAGCAGAAGCTCTCACGCGCTTCTTGATTCCAATGTTGTCTTCTTCGAGTTTGACTCCATGGATTTCAGCCATAAGAGAACGGAAATCGAACATCATAGTTAGAGAGAATAAGTGAGACAATAAGAGAGAGCTAGTCGAGATGACTGGGTAATGAATGACAATTTTTGAGTTCCTTATATAGGCTGGAGGCGGGACTTAGTGGCCCGCAGACTTGCCCCGCCCACAATATCTCGTCGTCTGGATGTCTGCCTGGGAGGGTTAGCGTGCTCCTAGGAAGAAATCACAGGTGAAGCTATTTACAGCCAAAAGTGAAGAAGCTAGAAAATTTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATWAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTCACCCATGTTGGCAAAGTAGTTTTTATCTACCAATCAAAAAATACACTTCGAAAAAAAATGTGTTTCAGGAAACAGGGAAGGTTTGAAGGTTTGCTGCAGATATTAATTCTTCATTTCACTTTCGTTTATATCATTTTCCTCAAAGTGAGCTCTTCTTTCTGAATTTAAATCATTGAAACGAAAATTTTTGAAACTTCTACTACCTCTGAGACACCAATTAATAAACTGTTGGGATCTAAAATTATTTATATTCTCTAACAGGAAATTGTACTGTTTCGAGTAGTAAACAAGTCGAAAGTGTTTGGGCTATTTTGTAATCAGTTTGGCCACAGAGAACCTCATTGATCAAGTTGTAAAGATATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>498 432 70</canonical_bands>
                <polymorphic_bands>568 432</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAAAACACTATTCGGTTTA</pcr_primer_p1>
		<pcr_primer_p2>GAGAACCAGCTCCTTTTACTATT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATWAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35663</snp_id>
        <super_contig>c010001306.Contig1</super_contig>
        <contig_pos>31584</contig_pos>
        <strand>+</strand>
        <context>GAAACATGAC[A/G]CTGMGCAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGAC</left_flank>
        <right_flank>CTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTGAATTTCAATACTGTGCTCCAGGAAGAGATCCGTTTCGTTTCGAAGATATTGAGCAGAAGCTCTCACGCGCTTCTTGATTCCAATGTTGTCTTCTTCGAGTTTGACTCCATGGATTTCAGCCATAAGAGAACGGAAATCGAACATCATAGTTAGAGAGAATAAGTGAGACAATAAGAGAGAGCTAGTCGAGATGACTGGGTAATGAATGACAATTTTTGAGTTCCTTATATAGGCTGGAGGCGGGACTTAGTGGCCCGCAGACTTGCCCCGCCCACAATATCTCGTCGTCTGGATGTCTGCCTGGGAGGGTTAGCGTGCTCCTAGGAAGAAATCACAGGTGAAGCTATTTACAGCCAAAAGTGAAGAAGCTAGAAAATTTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTCACCCATGTTGGCAAAGTAGTTTTTATCTACCAATCAAAAAATACACTTCGAAAAAAAATGTGTTTCAGGAAACAGGGAAGGTTTGAAGGTTTGCTGCAGATATTAATTCTTCATTTCACTTTCGTTTATATCATTTTCCTCAAAGTGAGCTCTTCTTTCTGAATTTAAATCATTGAAACGAAAATTTTTGAAACTTCTACTACCTCTGAGACACCAATTAATAAACTGTTGGGATCTAAAATTATTTATATTCTCTAACAGGAAATTGTACTGTTTCGAGTAGTAAACAAGTCGAAAGTGTTTGGGCTATTTTGTAATCAGTTTGGCCACAGAGAACCTCATTGATCAAGTTGTAAAGATATTCTGGATTACAAAC</canonical>
            <polymorphic>CTTGAATTTCAATACTGTGCTCCAGGAAGAGATCCGTTTCGTTTCGAAGATATTGAGCAGAAGCTCTCACGCGCTTCTTGATTCCAATGTTGTCTTCTTCGAGTTTGACTCCATGGATTTCAGCCATAAGAGAACGGAAATCGAACATCATAGTTAGAGAGAATAAGTGAGACAATAAGAGAGAGCTAGTCGAGATGACTGGGTAATGAATGACAATTTTTGAGTTCCTTATATAGGCTGGAGGCGGGACTTAGTGGCCCGCAGACTTGCCCCGCCCACAATATCTCGTCGTCTGGATGTCTGCCTGGGAGGGTTAGCGTGCTCCTAGGAAGAAATCACAGGTGAAGCTATTTACAGCCAAAAGTGAAGAAGCTAGAAAATTTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACRCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTCACCCATGTTGGCAAAGTAGTTTTTATCTACCAATCAAAAAATACACTTCGAAAAAAAATGTGTTTCAGGAAACAGGGAAGGTTTGAAGGTTTGCTGCAGATATTAATTCTTCATTTCACTTTCGTTTATATCATTTTCCTCAAAGTGAGCTCTTCTTTCTGAATTTAAATCATTGAAACGAAAATTTTTGAAACTTCTACTACCTCTGAGACACCAATTAATAAACTGTTGGGATCTAAAATTATTTATATTCTCTAACAGGAAATTGTACTGTTTCGAGTAGTAAACAAGTCGAAAGTGTTTGGGCTATTTTGTAATCAGTTTGGCCACAGAGAACCTCATTGATCAAGTTGTAAAGATATTCTGGATTACAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>503 280 217</canonical_bands>
                <polymorphic_bands>720 280</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>500 283 217</canonical_bands>
                <polymorphic_bands>717 283</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAAAACACTATTCGGTTTA</pcr_primer_p1>
		<pcr_primer_p2>GAGAACCAGCTCCTTTTACTATT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACRCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35664</snp_id>
        <super_contig>c010001306.Contig1</super_contig>
        <contig_pos>31588</contig_pos>
        <strand>+</strand>
        <context>CATGACRCTG[A/C]GCAAATCTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTG</left_flank>
        <right_flank>GCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTCAATACTGTGCTCCAGGAAGAGATCCGTTTCGTTTCGAAGATATTGAGCAGAAGCTCTCACGCGCTTCTTGATTCCAATGTTGTCTTCTTCGAGTTTGACTCCATGGATTTCAGCCATAAGAGAACGGAAATCGAACATCATAGTTAGAGAGAATAAGTGAGACAATAAGAGAGAGCTAGTCGAGATGACTGGGTAATGAATGACAATTTTTGAGTTCCTTATATAGGCTGGAGGCGGGACTTAGTGGCCCGCAGACTTGCCCCGCCCACAATATCTCGTCGTCTGGATGTCTGCCTGGGAGGGTTAGCGTGCTCCTAGGAAGAAATCACAGGTGAAGCTATTTACAGCCAAAAGTGAAGAAGCTAGAAAATTTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTCACCCATGTTGGCAAAGTAGTTTTTATCTACCAATCAAAAAATACACTTCGAAAAAAAATGTGTTTCAGGAAACAGGGAAGGTTTGAAGGTTTGCTGCAGATATTAATTCTTCATTTCACTTTCGTTTATATCATTTTCCTCAAAGTGAGCTCTTCTTTCTGAATTTAAATCATTGAAACGAAAATTTTTGAAACTTCTACTACCTCTGAGACACCAATTAATAAACTGTTGGGATCTAAAATTATTTATATTCTCTAACAGGAAATTGTACTGTTTCGAGTAGTAAACAAGTCGAAAGTGTTTGGGCTATTTTGTAATCAGTTTGGCCACAGAGAACCTCATTGATCAAGTTGTAAAGATATTCTGGATTACAAACGACA</canonical>
            <polymorphic>AATTTCAATACTGTGCTCCAGGAAGAGATCCGTTTCGTTTCGAAGATATTGAGCAGAAGCTCTCACGCGCTTCTTGATTCCAATGTTGTCTTCTTCGAGTTTGACTCCATGGATTTCAGCCATAAGAGAACGGAAATCGAACATCATAGTTAGAGAGAATAAGTGAGACAATAAGAGAGAGCTAGTCGAGATGACTGGGTAATGAATGACAATTTTTGAGTTCCTTATATAGGCTGGAGGCGGGACTTAGTGGCCCGCAGACTTGCCCCGCCCACAATATCTCGTCGTCTGGATGTCTGCCTGGGAGGGTTAGCGTGCTCCTAGGAAGAAATCACAGGTGAAGCTATTTACAGCCAAAAGTGAAGAAGCTAGAAAATTTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTGMGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTCACCCATGTTGGCAAAGTAGTTTTTATCTACCAATCAAAAAATACACTTCGAAAAAAAATGTGTTTCAGGAAACAGGGAAGGTTTGAAGGTTTGCTGCAGATATTAATTCTTCATTTCACTTTCGTTTATATCATTTTCCTCAAAGTGAGCTCTTCTTTCTGAATTTAAATCATTGAAACGAAAATTTTTGAAACTTCTACTACCTCTGAGACACCAATTAATAAACTGTTGGGATCTAAAATTATTTATATTCTCTAACAGGAAATTGTACTGTTTCGAGTAGTAAACAAGTCGAAAGTGTTTGGGCTATTTTGTAATCAGTTTGGCCACAGAGAACCTCATTGATCAAGTTGTAAAGATATTCTGGATTACAAACGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCGCA</site>
                <isoschizomers>
                    <enzyme>Acc16I</enzyme>
                    <enzyme>AviII</enzyme>
                    <enzyme>FspI</enzyme>
                    <enzyme>MstI</enzyme>
                    <enzyme>NsbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>499 432 69</canonical_bands>
                <polymorphic_bands>931 69</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>499 284 217</canonical_bands>
                <polymorphic_bands>716 284</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>496 287 217</canonical_bands>
                <polymorphic_bands>713 287</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAAAACACTATTCGGTTTA</pcr_primer_p1>
		<pcr_primer_p2>GAGAACCAGCTCCTTTTACTATT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTGMGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35665</snp_id>
        <super_contig>c010001306.Contig1</super_contig>
        <contig_pos>31639</contig_pos>
        <strand>+</strand>
        <context>TAAAGAGTTT[A/T]TAAAARTTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTT</left_flank>
        <right_flank>TAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCAGAAGCTCTCACGCGCTTCTTGATTCCAATGTTGTCTTCTTCGAGTTTGACTCCATGGATTTCAGCCATAAGAGAACGGAAATCGAACATCATAGTTAGAGAGAATAAGTGAGACAATAAGAGAGAGCTAGTCGAGATGACTGGGTAATGAATGACAATTTTTGAGTTCCTTATATAGGCTGGAGGCGGGACTTAGTGGCCCGCAGACTTGCCCCGCCCACAATATCTCGTCGTCTGGATGTCTGCCTGGGAGGGTTAGCGTGCTCCTAGGAAGAAATCACAGGTGAAGCTATTTACAGCCAAAAGTGAAGAAGCTAGAAAATTTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTCACCCATGTTGGCAAAGTAGTTTTTATCTACCAATCAAAAAATACACTTCGAAAAAAAATGTGTTTCAGGAAACAGGGAAGGTTTGAAGGTTTGCTGCAGATATTAATTCTTCATTTCACTTTCGTTTATATCATTTTCCTCAAAGTGAGCTCTTCTTTCTGAATTTAAATCATTGAAACGAAAATTTTTGAAACTTCTACTACCTCTGAGACACCAATTAATAAACTGTTGGGATCTAAAATTATTTATATTCTCTAACAGGAAATTGTACTGTTTCGAGTAGTAAACAAGTCGAAAGTGTTTGGGCTATTTTGTAATCAGTTTGGCCACAGAGAACCTCATTGATCAAGTTGTAAAGATATTCTGGATTACAAACGACATGGCTAATGTTGATGAATTTCTAAAGAAAATGTGTCAATTAGCAAAATAAA</canonical>
            <polymorphic>AGCAGAAGCTCTCACGCGCTTCTTGATTCCAATGTTGTCTTCTTCGAGTTTGACTCCATGGATTTCAGCCATAAGAGAACGGAAATCGAACATCATAGTTAGAGAGAATAAGTGAGACAATAAGAGAGAGCTAGTCGAGATGACTGGGTAATGAATGACAATTTTTGAGTTCCTTATATAGGCTGGAGGCGGGACTTAGTGGCCCGCAGACTTGCCCCGCCCACAATATCTCGTCGTCTGGATGTCTGCCTGGGAGGGTTAGCGTGCTCCTAGGAAGAAATCACAGGTGAAGCTATTTACAGCCAAAAGTGAAGAAGCTAGAAAATTTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTWTAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTCACCCATGTTGGCAAAGTAGTTTTTATCTACCAATCAAAAAATACACTTCGAAAAAAAATGTGTTTCAGGAAACAGGGAAGGTTTGAAGGTTTGCTGCAGATATTAATTCTTCATTTCACTTTCGTTTATATCATTTTCCTCAAAGTGAGCTCTTCTTTCTGAATTTAAATCATTGAAACGAAAATTTTTGAAACTTCTACTACCTCTGAGACACCAATTAATAAACTGTTGGGATCTAAAATTATTTATATTCTCTAACAGGAAATTGTACTGTTTCGAGTAGTAAACAAGTCGAAAGTGTTTGGGCTATTTTGTAATCAGTTTGGCCACAGAGAACCTCATTGATCAAGTTGTAAAGATATTCTGGATTACAAACGACATGGCTAATGTTGATGAATTTCTAAAGAAAATGTGTCAATTAGCAAAATAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 430 70</canonical_bands>
                <polymorphic_bands>570 430</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAAAACACTATTCGGTTTA</pcr_primer_p1>
		<pcr_primer_p2>GAGAACCAGCTCCTTTTACTATT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTWTAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35666</snp_id>
        <super_contig>c010001306.Contig1</super_contig>
        <contig_pos>31645</contig_pos>
        <strand>+</strand>
        <context>GTTTWTAAAA[A/G]TTAACTTTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAA</left_flank>
        <right_flank>TTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTCTCACGCGCTTCTTGATTCCAATGTTGTCTTCTTCGAGTTTGACTCCATGGATTTCAGCCATAAGAGAACGGAAATCGAACATCATAGTTAGAGAGAATAAGTGAGACAATAAGAGAGAGCTAGTCGAGATGACTGGGTAATGAATGACAATTTTTGAGTTCCTTATATAGGCTGGAGGCGGGACTTAGTGGCCCGCAGACTTGCCCCGCCCACAATATCTCGTCGTCTGGATGTCTGCCTGGGAGGGTTAGCGTGCTCCTAGGAAGAAATCACAGGTGAAGCTATTTACAGCCAAAAGTGAAGAAGCTAGAAAATTTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTCACCCATGTTGGCAAAGTAGTTTTTATCTACCAATCAAAAAATACACTTCGAAAAAAAATGTGTTTCAGGAAACAGGGAAGGTTTGAAGGTTTGCTGCAGATATTAATTCTTCATTTCACTTTCGTTTATATCATTTTCCTCAAAGTGAGCTCTTCTTTCTGAATTTAAATCATTGAAACGAAAATTTTTGAAACTTCTACTACCTCTGAGACACCAATTAATAAACTGTTGGGATCTAAAATTATTTATATTCTCTAACAGGAAATTGTACTGTTTCGAGTAGTAAACAAGTCGAAAGTGTTTGGGCTATTTTGTAATCAGTTTGGCCACAGAGAACCTCATTGATCAAGTTGTAAAGATATTCTGGATTACAAACGACATGGCTAATGTTGATGAATTTCTAAAGAAAATGTGTCAATTAGCAAAATAAAGCACAA</canonical>
            <polymorphic>AGCTCTCACGCGCTTCTTGATTCCAATGTTGTCTTCTTCGAGTTTGACTCCATGGATTTCAGCCATAAGAGAACGGAAATCGAACATCATAGTTAGAGAGAATAAGTGAGACAATAAGAGAGAGCTAGTCGAGATGACTGGGTAATGAATGACAATTTTTGAGTTCCTTATATAGGCTGGAGGCGGGACTTAGTGGCCCGCAGACTTGCCCCGCCCACAATATCTCGTCGTCTGGATGTCTGCCTGGGAGGGTTAGCGTGCTCCTAGGAAGAAATCACAGGTGAAGCTATTTACAGCCAAAAGTGAAGAAGCTAGAAAATTTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAARTTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTCACCCATGTTGGCAAAGTAGTTTTTATCTACCAATCAAAAAATACACTTCGAAAAAAAATGTGTTTCAGGAAACAGGGAAGGTTTGAAGGTTTGCTGCAGATATTAATTCTTCATTTCACTTTCGTTTATATCATTTTCCTCAAAGTGAGCTCTTCTTTCTGAATTTAAATCATTGAAACGAAAATTTTTGAAACTTCTACTACCTCTGAGACACCAATTAATAAACTGTTGGGATCTAAAATTATTTATATTCTCTAACAGGAAATTGTACTGTTTCGAGTAGTAAACAAGTCGAAAGTGTTTGGGCTATTTTGTAATCAGTTTGGCCACAGAGAACCTCATTGATCAAGTTGTAAAGATATTCTGGATTACAAACGACATGGCTAATGTTGATGAATTTCTAAAGAAAATGTGTCAATTAGCAAAATAAAGCACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>169 164 153 132 77 57 42 33 28 27 24 24 21 21 21 7</canonical_bands>
                <polymorphic_bands>197 164 153 132 77 57 42 33 27 24 24 21 21 21 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAAAACACTATTCGGTTTA</pcr_primer_p1>
		<pcr_primer_p2>GAGAACCAGCTCCTTTTACTATT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAARTTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35667</snp_id>
        <super_contig>c010001306.Contig1</super_contig>
        <contig_pos>31713</contig_pos>
        <strand>+</strand>
        <context>GTTCTCACCC[A/G]TGTTGGCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTCACCC</left_flank>
        <right_flank>TGTTGGCAAAGTAGTTTTTATCTACCAATCAAAAAATACACTTCGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAACGGAAATCGAACATCATAGTTAGAGAGAATAAGTGAGACAATAAGAGAGAGCTAGTCGAGATGACTGGGTAATGAATGACAATTTTTGAGTTCCTTATATAGGCTGGAGGCGGGACTTAGTGGCCCGCAGACTTGCCCCGCCCACAATATCTCGTCGTCTGGATGTCTGCCTGGGAGGGTTAGCGTGCTCCTAGGAAGAAATCACAGGTGAAGCTATTTACAGCCAAAAGTGAAGAAGCTAGAAAATTTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTCACCCATGTTGGCAAAGTAGTTTTTATCTACCAATCAAAAAATACACTTCGAAAAAAAATGTGTTTCAGGAAACAGGGAAGGTTTGAAGGTTTGCTGCAGATATTAATTCTTCATTTCACTTTCGTTTATATCATTTTCCTCAAAGTGAGCTCTTCTTTCTGAATTTAAATCATTGAAACGAAAATTTTTGAAACTTCTACTACCTCTGAGACACCAATTAATAAACTGTTGGGATCTAAAATTATTTATATTCTCTAACAGGAAATTGTACTGTTTCGAGTAGTAAACAAGTCGAAAGTGTTTGGGCTATTTTGTAATCAGTTTGGCCACAGAGAACCTCATTGATCAAGTTGTAAAGATATTCTGGATTACAAACGACATGGCTAATGTTGATGAATTTCTAAAGAAAATGTGTCAATTAGCAAAATAAAGCACAATCAGCGTTTGTTTGGAAAACTCGAATTGTTCTGACCATAGCGCACTAATTTGAAGCGACAAAAAAAGG</canonical>
            <polymorphic>GAGAACGGAAATCGAACATCATAGTTAGAGAGAATAAGTGAGACAATAAGAGAGAGCTAGTCGAGATGACTGGGTAATGAATGACAATTTTTGAGTTCCTTATATAGGCTGGAGGCGGGACTTAGTGGCCCGCAGACTTGCCCCGCCCACAATATCTCGTCGTCTGGATGTCTGCCTGGGAGGGTTAGCGTGCTCCTAGGAAGAAATCACAGGTGAAGCTATTTACAGCCAAAAGTGAAGAAGCTAGAAAATTTTTGAAAACACTATTCGGTTTAAAATTAAAAATTACCATAGGGGCTGATTTTTCATAACTTGTCTACCGTAAAATTGGGTTGACGTACATTTCTGTGGACTTATAAAGAAACATGACGCTGCGCAAATCTAACTATTAGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTCACCCRTGTTGGCAAAGTAGTTTTTATCTACCAATCAAAAAATACACTTCGAAAAAAAATGTGTTTCAGGAAACAGGGAAGGTTTGAAGGTTTGCTGCAGATATTAATTCTTCATTTCACTTTCGTTTATATCATTTTCCTCAAAGTGAGCTCTTCTTTCTGAATTTAAATCATTGAAACGAAAATTTTTGAAACTTCTACTACCTCTGAGACACCAATTAATAAACTGTTGGGATCTAAAATTATTTATATTCTCTAACAGGAAATTGTACTGTTTCGAGTAGTAAACAAGTCGAAAGTGTTTGGGCTATTTTGTAATCAGTTTGGCCACAGAGAACCTCATTGATCAAGTTGTAAAGATATTCTGGATTACAAACGACATGGCTAATGTTGATGAATTTCTAAAGAAAATGTGTCAATTAGCAAAATAAAGCACAATCAGCGTTTGTTTGGAAAACTCGAATTGTTCTGACCATAGCGCACTAATTTGAAGCGACAAAAAAAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>375 365 126 101 33</canonical_bands>
                <polymorphic_bands>408 365 126 101</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAGACAATGCAATTTATGAAG</pcr_primer_p1>
		<pcr_primer_p2>GGAAAATGATATAAACGAAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTCACCCATGTTGGCAAAGTAGTTTTTATCTACCAATCAAAAAATACACTTCGAAAAAAAATGTGTTTCAGGAAACAGGGAAGGTTTGAAGGTTTGCTGCAGATATTAATTCTTCATTTCACTTTCGTTTATATCATTTTCC</canonical_amplicon>
		<polymorphic_amplicon>AGAAGACAATGCAATTTATGAAGTTTAAAGAGTTTATAAAAATTAACTTTAGTTTCGAGTTTCAGATCAGAGATACATGAAAAATAGTAAAAGGAGCTGGTTCTCACCCRTGTTGGCAAAGTAGTTTTTATCTACCAATCAAAAAATACACTTCGAAAAAAAATGTGTTTCAGGAAACAGGGAAGGTTTGAAGGTTTGCTGCAGATATTAATTCTTCATTTCACTTTCGTTTATATCATTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35668</snp_id>
        <super_contig>c010001306.Contig1</super_contig>
        <contig_pos>33156</contig_pos>
        <strand>+</strand>
        <context>AAAAGATATG[A/G]CTGAAACTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATG</left_flank>
        <right_flank>CTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAAGAAACAACTGTTTCAAACCTTGCATATGAAATGCAAAAATCGGTTCTATTTAGTTTGCAGGCTTCGATATTTGTTAAAAACAATCGTTTATTGGAAAACCGCAGAAACAAACCAGAGAAAAAAGAAAAGAATAAATGCACTCAACAGATAAAAAATAGATCAGTTCATGAGTCATTCTACAAATACTAATACTAATTCTTTTACAAATAGCTACTGGCAAAAGAAGTACCCAAGAAGGACTGACTGATTGATTGAGATGGACTTCTAATTCGACGTGCTCCGGCTCTTGTGCTTCTTCCGGATCCTGCTCCATCACGAATTGGTTCGACTTCTTCGATCTCATCATCCAAACCATCTTCTCCACTCATCATTTGACGTTGAACCAGTTGTTTGTAGAGTCCTTCTTGTTCCATTAGTGTCTTGTGATTTCCCAATTGTTCCACTTTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAACACAATTGAATTGAAACTTTTAGTAACGACATAATATTTGTAAACTTTTTGAAATCGAGAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAGTCTTTCCCTTCAAATTCTTCGAAATCGCTTCTTGTACCTGAAAAAGATATTTTCGGAATATT</canonical>
            <polymorphic>ACCAAGAAACAACTGTTTCAAACCTTGCATATGAAATGCAAAAATCGGTTCTATTTAGTTTGCAGGCTTCGATATTTGTTAAAAACAATCGTTTATTGGAAAACCGCAGAAACAAACCAGAGAAAAAAGAAAAGAATAAATGCACTCAACAGATAAAAAATAGATCAGTTCATGAGTCATTCTACAAATACTAATACTAATTCTTTTACAAATAGCTACTGGCAAAAGAAGTACCCAAGAAGGACTGACTGATTGATTGAGATGGACTTCTAATTCGACGTGCTCCGGCTCTTGTGCTTCTTCCGGATCCTGCTCCATCACGAATTGGTTCGACTTCTTCGATCTCATCATCCAAACCATCTTCTCCACTCATCATTTGACGTTGAACCAGTTGTTTGTAGAGTCCTTCTTGTTCCATTAGTGTCTTGTGATTTCCCAATTGTTCCACTTTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATGRCTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAACACAATTGAATTGAAACTTTTAGTAACGACATAATATTTGTAAACTTTTTGAAATCGAGAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAGTCTTTCCCTTCAAATTCTTCGAAATCGCTTCTTGTACCTGAAAAAGATATTTTCGGAATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCCTTCTTGTTCCATTAGTGT</pcr_primer_p1>
		<pcr_primer_p2>GTTTCCCTATCTTTCGTTTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTCCTTCTTGTTCCATTAGTGTCTTGTGATTTCCCAATTGTTCCACTTTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAAC</canonical_amplicon>
		<polymorphic_amplicon>AGTCCTTCTTGTTCCATTAGTGTCTTGTGATTTCCCAATTGTTCCACTTTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATGRCTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35669</snp_id>
        <super_contig>c010001306.Contig1</super_contig>
        <contig_pos>33178</contig_pos>
        <strand>+</strand>
        <context>GGAATTTTCT[A/G]AAATGGRAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTATTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCT</left_flank>
        <right_flank>AAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTGCATATGAAATGCAAAAATCGGTTCTATTTAGTTTGCAGGCTTCGATATTTGTTAAAAACAATCGTTTATTGGAAAACCGCAGAAACAAACCAGAGAAAAAAGAAAAGAATAAATGCACTCAACAGATAAAAAATAGATCAGTTCATGAGTCATTCTACAAATACTAATACTAATTCTTTTACAAATAGCTACTGGCAAAAGAAGTACCCAAGAAGGACTGACTGATTGATTGAGATGGACTTCTAATTCGACGTGCTCCGGCTCTTGTGCTTCTTCCGGATCCTGCTCCATCACGAATTGGTTCGACTTCTTCGATCTCATCATCCAAACCATCTTCTCCACTCATCATTTGACGTTGAACCAGTTGTTTGTAGAGTCCTTCTTGTTCCATTAGTGTCTTGTGATTTCCCAATTGTTCCACTTTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAACACAATTGAATTGAAACTTTTAGTAACGACATAATATTTGTAAACTTTTTGAAATCGAGAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAGTCTTTCCCTTCAAATTCTTCGAAATCGCTTCTTGTACCTGAAAAAGATATTTTCGGAATATTTCGATGCAAATTGAAACTTACA</canonical>
            <polymorphic>CCTTGCATATGAAATGCAAAAATCGGTTCTATTTAGTTTGCAGGCTTCGATATTTGTTAAAAACAATCGTTTATTGGAAAACCGCAGAAACAAACCAGAGAAAAAAGAAAAGAATAAATGCACTCAACAGATAAAAAATAGATCAGTTCATGAGTCATTCTACAAATACTAATACTAATTCTTTTACAAATAGCTACTGGCAAAAGAAGTACCCAAGAAGGACTGACTGATTGATTGAGATGGACTTCTAATTCGACGTGCTCCGGCTCTTGTGCTTCTTCCGGATCCTGCTCCATCACGAATTGGTTCGACTTCTTCGATCTCATCATCCAAACCATCTTCTCCACTCATCATTTGACGTTGAACCAGTTGTTTGTAGAGTCCTTCTTGTTCCATTAGTGTCTTGTGATTTCCCAATTGTTCCACTTTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTRAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAACACAATTGAATTGAAACTTTTAGTAACGACATAATATTTGTAAACTTTTTGAAATCGAGAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAGTCTTTCCCTTCAAATTCTTCGAAATCGCTTCTTGTACCTGAAAAAGATATTTTCGGAATATTTCGATGCAAATTGAAACTTACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>499 472 29</canonical_bands>
                <polymorphic_bands>971 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTCCTTCTTGTTCCATTAGTGT</pcr_primer_p1>
		<pcr_primer_p2>GTTTCCCTATCTTTCGTTTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTCCTTCTTGTTCCATTAGTGTCTTGTGATTTCCCAATTGTTCCACTTTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAAC</canonical_amplicon>
		<polymorphic_amplicon>AGTCCTTCTTGTTCCATTAGTGTCTTGTGATTTCCCAATTGTTCCACTTTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTRAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35670</snp_id>
        <super_contig>c010001306.Contig1</super_contig>
        <contig_pos>33185</contig_pos>
        <strand>+</strand>
        <context>TCTRAAATGG[A/G]AGAACCTATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGG</left_flank>
        <right_flank>AGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGAAATGCAAAAATCGGTTCTATTTAGTTTGCAGGCTTCGATATTTGTTAAAAACAATCGTTTATTGGAAAACCGCAGAAACAAACCAGAGAAAAAAGAAAAGAATAAATGCACTCAACAGATAAAAAATAGATCAGTTCATGAGTCATTCTACAAATACTAATACTAATTCTTTTACAAATAGCTACTGGCAAAAGAAGTACCCAAGAAGGACTGACTGATTGATTGAGATGGACTTCTAATTCGACGTGCTCCGGCTCTTGTGCTTCTTCCGGATCCTGCTCCATCACGAATTGGTTCGACTTCTTCGATCTCATCATCCAAACCATCTTCTCCACTCATCATTTGACGTTGAACCAGTTGTTTGTAGAGTCCTTCTTGTTCCATTAGTGTCTTGTGATTTCCCAATTGTTCCACTTTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAACACAATTGAATTGAAACTTTTAGTAACGACATAATATTTGTAAACTTTTTGAAATCGAGAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAGTCTTTCCCTTCAAATTCTTCGAAATCGCTTCTTGTACCTGAAAAAGATATTTTCGGAATATTTCGATGCAAATTGAAACTTACAGTATGCT</canonical>
            <polymorphic>TATGAAATGCAAAAATCGGTTCTATTTAGTTTGCAGGCTTCGATATTTGTTAAAAACAATCGTTTATTGGAAAACCGCAGAAACAAACCAGAGAAAAAAGAAAAGAATAAATGCACTCAACAGATAAAAAATAGATCAGTTCATGAGTCATTCTACAAATACTAATACTAATTCTTTTACAAATAGCTACTGGCAAAAGAAGTACCCAAGAAGGACTGACTGATTGATTGAGATGGACTTCTAATTCGACGTGCTCCGGCTCTTGTGCTTCTTCCGGATCCTGCTCCATCACGAATTGGTTCGACTTCTTCGATCTCATCATCCAAACCATCTTCTCCACTCATCATTTGACGTTGAACCAGTTGTTTGTAGAGTCCTTCTTGTTCCATTAGTGTCTTGTGATTTCCCAATTGTTCCACTTTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGRAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAACACAATTGAATTGAAACTTTTAGTAACGACATAATATTTGTAAACTTTTTGAAATCGAGAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAGTCTTTCCCTTCAAATTCTTCGAAATCGCTTCTTGTACCTGAAAAAGATATTTTCGGAATATTTCGATGCAAATTGAAACTTACAGTATGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCCTTCTTGTTCCATTAGTGT</pcr_primer_p1>
		<pcr_primer_p2>GTTTCCCTATCTTTCGTTTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTCCTTCTTGTTCCATTAGTGTCTTGTGATTTCCCAATTGTTCCACTTTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAAC</canonical_amplicon>
		<polymorphic_amplicon>AGTCCTTCTTGTTCCATTAGTGTCTTGTGATTTCCCAATTGTTCCACTTTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGRAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35671</snp_id>
        <super_contig>c010001306.Contig1</super_contig>
        <contig_pos>33218</contig_pos>
        <strand>+</strand>
        <context>TCACTGAGAT[A/C]GCAAGAGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGAT</left_flank>
        <right_flank>GCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGGCTTCGATATTTGTTAAAAACAATCGTTTATTGGAAAACCGCAGAAACAAACCAGAGAAAAAAGAAAAGAATAAATGCACTCAACAGATAAAAAATAGATCAGTTCATGAGTCATTCTACAAATACTAATACTAATTCTTTTACAAATAGCTACTGGCAAAAGAAGTACCCAAGAAGGACTGACTGATTGATTGAGATGGACTTCTAATTCGACGTGCTCCGGCTCTTGTGCTTCTTCCGGATCCTGCTCCATCACGAATTGGTTCGACTTCTTCGATCTCATCATCCAAACCATCTTCTCCACTCATCATTTGACGTTGAACCAGTTGTTTGTAGAGTCCTTCTTGTTCCATTAGTGTCTTGTGATTTCCCAATTGTTCCACTTTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAACACAATTGAATTGAAACTTTTAGTAACGACATAATATTTGTAAACTTTTTGAAATCGAGAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAGTCTTTCCCTTCAAATTCTTCGAAATCGCTTCTTGTACCTGAAAAAGATATTTTCGGAATATTTCGATGCAAATTGAAACTTACAGTATGCTCAGATTCAGCATCCAATGCCGAAGTGGCTTCAT</canonical>
            <polymorphic>CAGGCTTCGATATTTGTTAAAAACAATCGTTTATTGGAAAACCGCAGAAACAAACCAGAGAAAAAAGAAAAGAATAAATGCACTCAACAGATAAAAAATAGATCAGTTCATGAGTCATTCTACAAATACTAATACTAATTCTTTTACAAATAGCTACTGGCAAAAGAAGTACCCAAGAAGGACTGACTGATTGATTGAGATGGACTTCTAATTCGACGTGCTCCGGCTCTTGTGCTTCTTCCGGATCCTGCTCCATCACGAATTGGTTCGACTTCTTCGATCTCATCATCCAAACCATCTTCTCCACTCATCATTTGACGTTGAACCAGTTGTTTGTAGAGTCCTTCTTGTTCCATTAGTGTCTTGTGATTTCCCAATTGTTCCACTTTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATMGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAACACAATTGAATTGAAACTTTTAGTAACGACATAATATTTGTAAACTTTTTGAAATCGAGAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAGTCTTTCCCTTCAAATTCTTCGAAATCGCTTCTTGTACCTGAAAAAGATATTTTCGGAATATTTCGATGCAAATTGAAACTTACAGTATGCTCAGATTCAGCATCCAATGCCGAAGTGGCTTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>504 209 143 100 35 9</canonical_bands>
                <polymorphic_bands>513 209 143 100 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTCCTTCTTGTTCCATTAGTGT</pcr_primer_p1>
		<pcr_primer_p2>GTTTCCCTATCTTTCGTTTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTCCTTCTTGTTCCATTAGTGTCTTGTGATTTCCCAATTGTTCCACTTTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAAC</canonical_amplicon>
		<polymorphic_amplicon>AGTCCTTCTTGTTCCATTAGTGTCTTGTGATTTCCCAATTGTTCCACTTTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATMGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35672</snp_id>
        <super_contig>c010001306.Contig1</super_contig>
        <contig_pos>33282</contig_pos>
        <strand>+</strand>
        <context>TTAATGTAAA[A/G]WTTAAGAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAA</left_flank>
        <right_flank>ATTAAGAAACGAAAGATAGGGAAACACAATTGAATTGAAACTTTTAGTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAAAAGAATAAATGCACTCAACAGATAAAAAATAGATCAGTTCATGAGTCATTCTACAAATACTAATACTAATTCTTTTACAAATAGCTACTGGCAAAAGAAGTACCCAAGAAGGACTGACTGATTGATTGAGATGGACTTCTAATTCGACGTGCTCCGGCTCTTGTGCTTCTTCCGGATCCTGCTCCATCACGAATTGGTTCGACTTCTTCGATCTCATCATCCAAACCATCTTCTCCACTCATCATTTGACGTTGAACCAGTTGTTTGTAGAGTCCTTCTTGTTCCATTAGTGTCTTGTGATTTCCCAATTGTTCCACTTTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAACACAATTGAATTGAAACTTTTAGTAACGACATAATATTTGTAAACTTTTTGAAATCGAGAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAGTCTTTCCCTTCAAATTCTTCGAAATCGCTTCTTGTACCTGAAAAAGATATTTTCGGAATATTTCGATGCAAATTGAAACTTACAGTATGCTCAGATTCAGCATCCAATGCCGAAGTGGCTTCATCCAAAAGAAGAACAACTGGCTGGCGAACGAGAGCACGGGCAATGGCGATTCTTTGTTTCTGACC</canonical>
            <polymorphic>AAGAAAAGAATAAATGCACTCAACAGATAAAAAATAGATCAGTTCATGAGTCATTCTACAAATACTAATACTAATTCTTTTACAAATAGCTACTGGCAAAAGAAGTACCCAAGAAGGACTGACTGATTGATTGAGATGGACTTCTAATTCGACGTGCTCCGGCTCTTGTGCTTCTTCCGGATCCTGCTCCATCACGAATTGGTTCGACTTCTTCGATCTCATCATCCAAACCATCTTCTCCACTCATCATTTGACGTTGAACCAGTTGTTTGTAGAGTCCTTCTTGTTCCATTAGTGTCTTGTGATTTCCCAATTGTTCCACTTTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAARATTAAGAAACGAAAGATAGGGAAACACAATTGAATTGAAACTTTTAGTAACGACATAATATTTGTAAACTTTTTGAAATCGAGAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAGTCTTTCCCTTCAAATTCTTCGAAATCGCTTCTTGTACCTGAAAAAGATATTTTCGGAATATTTCGATGCAAATTGAAACTTACAGTATGCTCAGATTCAGCATCCAATGCCGAAGTGGCTTCATCCAAAAGAAGAACAACTGGCTGGCGAACGAGAGCACGGGCAATGGCGATTCTTTGTTTCTGACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>139 118 115 82 79 73 72 63 58 51 45 30 28 22 11 9 5</canonical_bands>
                <polymorphic_bands>139 118 115 82 79 73 72 63 58 58 51 45 22 11 9 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAAAGAAAATGCAAAAAGATATG</pcr_primer_p1>
		<pcr_primer_p2>AAGATATTTCTCGATTTCAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAACACAATTGAATTGAAACTTTTAGTAACGACATAATATTTGTAAACTTTTTGAAATCGAGAAATATCTT</canonical_amplicon>
		<polymorphic_amplicon>TTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAARATTAAGAAACGAAAGATAGGGAAACACAATTGAATTGAAACTTTTAGTAACGACATAATATTTGTAAACTTTTTGAAATCGAGAAATATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35673</snp_id>
        <super_contig>c010001306.Contig1</super_contig>
        <contig_pos>33283</contig_pos>
        <strand>+</strand>
        <context>TAATGTAAAR[A/T]TTAAGAAACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAA</left_flank>
        <right_flank>TTAAGAAACGAAAGATAGGGAAACACAATTGAATTGAAACTTTTAGTAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAAAGAATAAATGCACTCAACAGATAAAAAATAGATCAGTTCATGAGTCATTCTACAAATACTAATACTAATTCTTTTACAAATAGCTACTGGCAAAAGAAGTACCCAAGAAGGACTGACTGATTGATTGAGATGGACTTCTAATTCGACGTGCTCCGGCTCTTGTGCTTCTTCCGGATCCTGCTCCATCACGAATTGGTTCGACTTCTTCGATCTCATCATCCAAACCATCTTCTCCACTCATCATTTGACGTTGAACCAGTTGTTTGTAGAGTCCTTCTTGTTCCATTAGTGTCTTGTGATTTCCCAATTGTTCCACTTTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAACACAATTGAATTGAAACTTTTAGTAACGACATAATATTTGTAAACTTTTTGAAATCGAGAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAGTCTTTCCCTTCAAATTCTTCGAAATCGCTTCTTGTACCTGAAAAAGATATTTTCGGAATATTTCGATGCAAATTGAAACTTACAGTATGCTCAGATTCAGCATCCAATGCCGAAGTGGCTTCATCCAAAAGAAGAACAACTGGCTGGCGAACGAGAGCACGGGCAATGGCGATTCTTTGTTTCTGACCT</canonical>
            <polymorphic>AGAAAAGAATAAATGCACTCAACAGATAAAAAATAGATCAGTTCATGAGTCATTCTACAAATACTAATACTAATTCTTTTACAAATAGCTACTGGCAAAAGAAGTACCCAAGAAGGACTGACTGATTGATTGAGATGGACTTCTAATTCGACGTGCTCCGGCTCTTGTGCTTCTTCCGGATCCTGCTCCATCACGAATTGGTTCGACTTCTTCGATCTCATCATCCAAACCATCTTCTCCACTCATCATTTGACGTTGAACCAGTTGTTTGTAGAGTCCTTCTTGTTCCATTAGTGTCTTGTGATTTCCCAATTGTTCCACTTTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAWTTAAGAAACGAAAGATAGGGAAACACAATTGAATTGAAACTTTTAGTAACGACATAATATTTGTAAACTTTTTGAAATCGAGAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAGTCTTTCCCTTCAAATTCTTCGAAATCGCTTCTTGTACCTGAAAAAGATATTTTCGGAATATTTCGATGCAAATTGAAACTTACAGTATGCTCAGATTCAGCATCCAATGCCGAAGTGGCTTCATCCAAAAGAAGAACAACTGGCTGGCGAACGAGAGCACGGGCAATGGCGATTCTTTGTTTCTGACCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>139 119 115 82 79 73 71 63 58 51 45 30 28 22 11 9 5</canonical_bands>
                <polymorphic_bands>139 119 115 82 79 73 71 63 58 58 51 45 22 11 9 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAAAGAAAATGCAAAAAGATATG</pcr_primer_p1>
		<pcr_primer_p2>AAGATATTTCTCGATTTCAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAACACAATTGAATTGAAACTTTTAGTAACGACATAATATTTGTAAACTTTTTGAAATCGAGAAATATCTT</canonical_amplicon>
		<polymorphic_amplicon>TTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAWTTAAGAAACGAAAGATAGGGAAACACAATTGAATTGAAACTTTTAGTAACGACATAATATTTGTAAACTTTTTGAAATCGAGAAATATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35674</snp_id>
        <super_contig>c010001306.Contig1</super_contig>
        <contig_pos>33311</contig_pos>
        <strand>+</strand>
        <context>GGGAAACACA[A/C]TTGAATTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAACACA</left_flank>
        <right_flank>TTGAATTGAAACTTTTAGTAACGACATAATATTTGTAAACTTTTTGAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATAGATCAGTTCATGAGTCATTCTACAAATACTAATACTAATTCTTTTACAAATAGCTACTGGCAAAAGAAGTACCCAAGAAGGACTGACTGATTGATTGAGATGGACTTCTAATTCGACGTGCTCCGGCTCTTGTGCTTCTTCCGGATCCTGCTCCATCACGAATTGGTTCGACTTCTTCGATCTCATCATCCAAACCATCTTCTCCACTCATCATTTGACGTTGAACCAGTTGTTTGTAGAGTCCTTCTTGTTCCATTAGTGTCTTGTGATTTCCCAATTGTTCCACTTTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAACACAATTGAATTGAAACTTTTAGTAACGACATAATATTTGTAAACTTTTTGAAATCGAGAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAGTCTTTCCCTTCAAATTCTTCGAAATCGCTTCTTGTACCTGAAAAAGATATTTTCGGAATATTTCGATGCAAATTGAAACTTACAGTATGCTCAGATTCAGCATCCAATGCCGAAGTGGCTTCATCCAAAAGAAGAACAACTGGCTGGCGAACGAGAGCACGGGCAATGGCGATTCTTTGTTTCTGACCTCCTGCAAAATTTTAATTTCTTGAAAAAA</canonical>
            <polymorphic>AAAAATAGATCAGTTCATGAGTCATTCTACAAATACTAATACTAATTCTTTTACAAATAGCTACTGGCAAAAGAAGTACCCAAGAAGGACTGACTGATTGATTGAGATGGACTTCTAATTCGACGTGCTCCGGCTCTTGTGCTTCTTCCGGATCCTGCTCCATCACGAATTGGTTCGACTTCTTCGATCTCATCATCCAAACCATCTTCTCCACTCATCATTTGACGTTGAACCAGTTGTTTGTAGAGTCCTTCTTGTTCCATTAGTGTCTTGTGATTTCCCAATTGTTCCACTTTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAACACAMTTGAATTGAAACTTTTAGTAACGACATAATATTTGTAAACTTTTTGAAATCGAGAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAGTCTTTCCCTTCAAATTCTTCGAAATCGCTTCTTGTACCTGAAAAAGATATTTTCGGAATATTTCGATGCAAATTGAAACTTACAGTATGCTCAGATTCAGCATCCAATGCCGAAGTGGCTTCATCCAAAAGAAGAACAACTGGCTGGCGAACGAGAGCACGGGCAATGGCGATTCTTTGTTTCTGACCTCCTGCAAAATTTTAATTTCTTGAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>502 282 216</canonical_bands>
                <polymorphic_bands>718 282</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>139 126 115 82 79 73 63 58 51 45 43 30 28 22 15 11 9 6 5</canonical_bands>
                <polymorphic_bands>139 126 115 82 79 73 63 58 51 45 43 33 30 22 15 11 9 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAAAGAAAATGCAAAAAGATATG</pcr_primer_p1>
		<pcr_primer_p2>AAGATATTTCTCGATTTCAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAACACAATTGAATTGAAACTTTTAGTAACGACATAATATTTGTAAACTTTTTGAAATCGAGAAATATCTT</canonical_amplicon>
		<polymorphic_amplicon>TTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAACACAMTTGAATTGAAACTTTTAGTAACGACATAATATTTGTAAACTTTTTGAAATCGAGAAATATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35675</snp_id>
        <super_contig>c010001306.Contig1</super_contig>
        <contig_pos>33404</contig_pos>
        <strand>+</strand>
        <context>AATTTTGGGT[A/G]AATTACAATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGAAATCGAGAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGT</left_flank>
        <right_flank>AATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCACTAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGATTGATTGAGATGGACTTCTAATTCGACGTGCTCCGGCTCTTGTGCTTCTTCCGGATCCTGCTCCATCACGAATTGGTTCGACTTCTTCGATCTCATCATCCAAACCATCTTCTCCACTCATCATTTGACGTTGAACCAGTTGTTTGTAGAGTCCTTCTTGTTCCATTAGTGTCTTGTGATTTCCCAATTGTTCCACTTTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAACACAATTGAATTGAAACTTTTAGTAACGACATAATATTTGTAAACTTTTTGAAATCGAGAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAGTCTTTCCCTTCAAATTCTTCGAAATCGCTTCTTGTACCTGAAAAAGATATTTTCGGAATATTTCGATGCAAATTGAAACTTACAGTATGCTCAGATTCAGCATCCAATGCCGAAGTGGCTTCATCCAAAAGAAGAACAACTGGCTGGCGAACGAGAGCACGGGCAATGGCGATTCTTTGTTTCTGACCTCCTGCAAAATTTTAATTTCTTGAAAAAATTATTTTCTGTTCCAGTGGTTTTCAAGGAATACCATATAAAAACTGTATTACTCATGTTTCGTCATAGTAACATTAGTTTTTTGCATTAAAGT</canonical>
            <polymorphic>CTGATTGATTGAGATGGACTTCTAATTCGACGTGCTCCGGCTCTTGTGCTTCTTCCGGATCCTGCTCCATCACGAATTGGTTCGACTTCTTCGATCTCATCATCCAAACCATCTTCTCCACTCATCATTTGACGTTGAACCAGTTGTTTGTAGAGTCCTTCTTGTTCCATTAGTGTCTTGTGATTTCCCAATTGTTCCACTTTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAACACAATTGAATTGAAACTTTTAGTAACGACATAATATTTGTAAACTTTTTGAAATCGAGAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTRAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAGTCTTTCCCTTCAAATTCTTCGAAATCGCTTCTTGTACCTGAAAAAGATATTTTCGGAATATTTCGATGCAAATTGAAACTTACAGTATGCTCAGATTCAGCATCCAATGCCGAAGTGGCTTCATCCAAAAGAAGAACAACTGGCTGGCGAACGAGAGCACGGGCAATGGCGATTCTTTGTTTCTGACCTCCTGCAAAATTTTAATTTCTTGAAAAAATTATTTTCTGTTCCAGTGGTTTTCAAGGAATACCATATAAAAACTGTATTACTCATGTTTCGTCATAGTAACATTAGTTTTTTGCATTAAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>171 107 98 96 91 76 75 55 48 42 38 34 24 17 14 7 7</canonical_bands>
                <polymorphic_bands>171 134 107 98 91 76 75 55 48 42 34 24 17 14 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTTTTTGAAATCGAGAAATA</pcr_primer_p1>
		<pcr_primer_p2>CTGTCATTTTGATTGCTCATC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAACTTTTTGAAATCGAGAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAG</canonical_amplicon>
		<polymorphic_amplicon>AAACTTTTTGAAATCGAGAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTRAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35676</snp_id>
        <super_contig>c010001306.Contig1</super_contig>
        <contig_pos>33429</contig_pos>
        <strand>+</strand>
        <context>CGATTTTATG[A/G]CGATGACAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATG</left_flank>
        <right_flank>CGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGACGTGCTCCGGCTCTTGTGCTTCTTCCGGATCCTGCTCCATCACGAATTGGTTCGACTTCTTCGATCTCATCATCCAAACCATCTTCTCCACTCATCATTTGACGTTGAACCAGTTGTTTGTAGAGTCCTTCTTGTTCCATTAGTGTCTTGTGATTTCCCAATTGTTCCACTTTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAACACAATTGAATTGAAACTTTTAGTAACGACATAATATTTGTAAACTTTTTGAAATCGAGAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAGTCTTTCCCTTCAAATTCTTCGAAATCGCTTCTTGTACCTGAAAAAGATATTTTCGGAATATTTCGATGCAAATTGAAACTTACAGTATGCTCAGATTCAGCATCCAATGCCGAAGTGGCTTCATCCAAAAGAAGAACAACTGGCTGGCGAACGAGAGCACGGGCAATGGCGATTCTTTGTTTCTGACCTCCTGCAAAATTTTAATTTCTTGAAAAAATTATTTTCTGTTCCAGTGGTTTTCAAGGAATACCATATAAAAACTGTATTACTCATGTTTCGTCATAGTAACATTAGTTTTTTGCATTAAAGTAGGAATATTTTGAAAACTGTCCAAT</canonical>
            <polymorphic>TTCGACGTGCTCCGGCTCTTGTGCTTCTTCCGGATCCTGCTCCATCACGAATTGGTTCGACTTCTTCGATCTCATCATCCAAACCATCTTCTCCACTCATCATTTGACGTTGAACCAGTTGTTTGTAGAGTCCTTCTTGTTCCATTAGTGTCTTGTGATTTCCCAATTGTTCCACTTTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAACACAATTGAATTGAAACTTTTAGTAACGACATAATATTTGTAAACTTTTTGAAATCGAGAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATGRCGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAGTCTTTCCCTTCAAATTCTTCGAAATCGCTTCTTGTACCTGAAAAAGATATTTTCGGAATATTTCGATGCAAATTGAAACTTACAGTATGCTCAGATTCAGCATCCAATGCCGAAGTGGCTTCATCCAAAAGAAGAACAACTGGCTGGCGAACGAGAGCACGGGCAATGGCGATTCTTTGTTTCTGACCTCCTGCAAAATTTTAATTTCTTGAAAAAATTATTTTCTGTTCCAGTGGTTTTCAAGGAATACCATATAAAAACTGTATTACTCATGTTTCGTCATAGTAACATTAGTTTTTTGCATTAAAGTAGGAATATTTTGAAAACTGTCCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATATCTTCTCATGCAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>AGAATTTGAAGGGAAAGACTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAGTCTTTCCCTTCAAATTCT</canonical_amplicon>
		<polymorphic_amplicon>GAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATGRCGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAGTCTTTCCCTTCAAATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35677</snp_id>
        <super_contig>c010001306.Contig1</super_contig>
        <contig_pos>33449</contig_pos>
        <strand>+</strand>
        <context>ACCACCTTCC[A/G]CTAGTAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGGTGAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCC</left_flank>
        <right_flank>CTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGCTTCTTCCGGATCCTGCTCCATCACGAATTGGTTCGACTTCTTCGATCTCATCATCCAAACCATCTTCTCCACTCATCATTTGACGTTGAACCAGTTGTTTGTAGAGTCCTTCTTGTTCCATTAGTGTCTTGTGATTTCCCAATTGTTCCACTTTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAACACAATTGAATTGAAACTTTTAGTAACGACATAATATTTGTAAACTTTTTGAAATCGAGAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAGTCTTTCCCTTCAAATTCTTCGAAATCGCTTCTTGTACCTGAAAAAGATATTTTCGGAATATTTCGATGCAAATTGAAACTTACAGTATGCTCAGATTCAGCATCCAATGCCGAAGTGGCTTCATCCAAAAGAAGAACAACTGGCTGGCGAACGAGAGCACGGGCAATGGCGATTCTTTGTTTCTGACCTCCTGCAAAATTTTAATTTCTTGAAAAAATTATTTTCTGTTCCAGTGGTTTTCAAGGAATACCATATAAAAACTGTATTACTCATGTTTCGTCATAGTAACATTAGTTTTTTGCATTAAAGTAGGAATATTTTGAAAACTGTCCAATCATAACTTCCACACGTTAAA</canonical>
            <polymorphic>GTGCTTCTTCCGGATCCTGCTCCATCACGAATTGGTTCGACTTCTTCGATCTCATCATCCAAACCATCTTCTCCACTCATCATTTGACGTTGAACCAGTTGTTTGTAGAGTCCTTCTTGTTCCATTAGTGTCTTGTGATTTCCCAATTGTTCCACTTTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAACACAATTGAATTGAAACTTTTAGTAACGACATAATATTTGTAAACTTTTTGAAATCGAGAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCRCTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAGTCTTTCCCTTCAAATTCTTCGAAATCGCTTCTTGTACCTGAAAAAGATATTTTCGGAATATTTCGATGCAAATTGAAACTTACAGTATGCTCAGATTCAGCATCCAATGCCGAAGTGGCTTCATCCAAAAGAAGAACAACTGGCTGGCGAACGAGAGCACGGGCAATGGCGATTCTTTGTTTCTGACCTCCTGCAAAATTTTAATTTCTTGAAAAAATTATTTTCTGTTCCAGTGGTTTTCAAGGAATACCATATAAAAACTGTATTACTCATGTTTCGTCATAGTAACATTAGTTTTTTGCATTAAAGTAGGAATATTTTGAAAACTGTCCAATCATAACTTCCACACGTTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACTAGT</site>
                <isoschizomers>
                    <enzyme>AhlI</enzyme>
                    <enzyme>BcuI</enzyme>
                    <enzyme>SpeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>171 111 107 98 96 91 76 55 48 42 38 24 17 7 7 7 3 2</canonical_bands>
                <polymorphic_bands>171 111 107 98 98 96 76 55 48 42 38 24 17 7 7 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATATCTTCTCATGCAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>AGAATTTGAAGGGAAAGACTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAGTCTTTCCCTTCAAATTCT</canonical_amplicon>
		<polymorphic_amplicon>GAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCRCTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAGTCTTTCCCTTCAAATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35678</snp_id>
        <super_contig>c010001306.Contig1</super_contig>
        <contig_pos>33482</contig_pos>
        <strand>+</strand>
        <context>TCTAAAACAA[G/T]TATTATGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAA</left_flank>
        <right_flank>TATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTCGACTTCTTCGATCTCATCATCCAAACCATCTTCTCCACTCATCATTTGACGTTGAACCAGTTGTTTGTAGAGTCCTTCTTGTTCCATTAGTGTCTTGTGATTTCCCAATTGTTCCACTTTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAACACAATTGAATTGAAACTTTTAGTAACGACATAATATTTGTAAACTTTTTGAAATCGAGAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAGTCTTTCCCTTCAAATTCTTCGAAATCGCTTCTTGTACCTGAAAAAGATATTTTCGGAATATTTCGATGCAAATTGAAACTTACAGTATGCTCAGATTCAGCATCCAATGCCGAAGTGGCTTCATCCAAAAGAAGAACAACTGGCTGGCGAACGAGAGCACGGGCAATGGCGATTCTTTGTTTCTGACCTCCTGCAAAATTTTAATTTCTTGAAAAAATTATTTTCTGTTCCAGTGGTTTTCAAGGAATACCATATAAAAACTGTATTACTCATGTTTCGTCATAGTAACATTAGTTTTTTGCATTAAAGTAGGAATATTTTGAAAACTGTCCAATCATAACTTCCACACGTTAAAAGCCCTAGAACATTTTGACTTTCTGATGACTCA</canonical>
            <polymorphic>GGTTCGACTTCTTCGATCTCATCATCCAAACCATCTTCTCCACTCATCATTTGACGTTGAACCAGTTGTTTGTAGAGTCCTTCTTGTTCCATTAGTGTCTTGTGATTTCCCAATTGTTCCACTTTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAACACAATTGAATTGAAACTTTTAGTAACGACATAATATTTGTAAACTTTTTGAAATCGAGAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAAKTATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAGTCTTTCCCTTCAAATTCTTCGAAATCGCTTCTTGTACCTGAAAAAGATATTTTCGGAATATTTCGATGCAAATTGAAACTTACAGTATGCTCAGATTCAGCATCCAATGCCGAAGTGGCTTCATCCAAAAGAAGAACAACTGGCTGGCGAACGAGAGCACGGGCAATGGCGATTCTTTGTTTCTGACCTCCTGCAAAATTTTAATTTCTTGAAAAAATTATTTTCTGTTCCAGTGGTTTTCAAGGAATACCATATAAAAACTGTATTACTCATGTTTCGTCATAGTAACATTAGTTTTTTGCATTAAAGTAGGAATATTTTGAAAACTGTCCAATCATAACTTCCACACGTTAAAAGCCCTAGAACATTTTGACTTTCTGATGACTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATATCTTCTCATGCAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>AGAATTTGAAGGGAAAGACTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAGTCTTTCCCTTCAAATTCT</canonical_amplicon>
		<polymorphic_amplicon>GAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAAKTATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAGTCTTTCCCTTCAAATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35679</snp_id>
        <super_contig>c010001306.Contig1</super_contig>
        <contig_pos>33507</contig_pos>
        <strand>+</strand>
        <context>AGATACATGT[A/T]TCCTTTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGT</left_flank>
        <right_flank>TCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAACCATCTTCTCCACTCATCATTTGACGTTGAACCAGTTGTTTGTAGAGTCCTTCTTGTTCCATTAGTGTCTTGTGATTTCCCAATTGTTCCACTTTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAACACAATTGAATTGAAACTTTTAGTAACGACATAATATTTGTAAACTTTTTGAAATCGAGAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAGTCTTTCCCTTCAAATTCTTCGAAATCGCTTCTTGTACCTGAAAAAGATATTTTCGGAATATTTCGATGCAAATTGAAACTTACAGTATGCTCAGATTCAGCATCCAATGCCGAAGTGGCTTCATCCAAAAGAAGAACAACTGGCTGGCGAACGAGAGCACGGGCAATGGCGATTCTTTGTTTCTGACCTCCTGCAAAATTTTAATTTCTTGAAAAAATTATTTTCTGTTCCAGTGGTTTTCAAGGAATACCATATAAAAACTGTATTACTCATGTTTCGTCATAGTAACATTAGTTTTTTGCATTAAAGTAGGAATATTTTGAAAACTGTCCAATCATAACTTCCACACGTTAAAAGCCCTAGAACATTTTGACTTTCTGATGACTCAATTGCTTCCAGAATTTTAATTAACG</canonical>
            <polymorphic>CCAAACCATCTTCTCCACTCATCATTTGACGTTGAACCAGTTGTTTGTAGAGTCCTTCTTGTTCCATTAGTGTCTTGTGATTTCCCAATTGTTCCACTTTTCCCTGGAAATTCAATGAATTTTATTAAAGAAAATGCAAAAAGATATGACTGAAACTACAGGAATTTTCTGAAATGGAAGAACCTATCATTGAATCTAGATCACTGAGATCGCAAGAGTTTTTTTTTTCGAAAATGAGCTCAAAAATTTAATACTTGAGTTGATTTAATGTAAAAATTAAGAAACGAAAGATAGGGAAACACAATTGAATTGAAACTTTTAGTAACGACATAATATTTGTAAACTTTTTGAAATCGAGAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGTWTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAGTCTTTCCCTTCAAATTCTTCGAAATCGCTTCTTGTACCTGAAAAAGATATTTTCGGAATATTTCGATGCAAATTGAAACTTACAGTATGCTCAGATTCAGCATCCAATGCCGAAGTGGCTTCATCCAAAAGAAGAACAACTGGCTGGCGAACGAGAGCACGGGCAATGGCGATTCTTTGTTTCTGACCTCCTGCAAAATTTTAATTTCTTGAAAAAATTATTTTCTGTTCCAGTGGTTTTCAAGGAATACCATATAAAAACTGTATTACTCATGTTTCGTCATAGTAACATTAGTTTTTTGCATTAAAGTAGGAATATTTTGAAAACTGTCCAATCATAACTTCCACACGTTAAAAGCCCTAGAACATTTTGACTTTCTGATGACTCAATTGCTTCCAGAATTTTAATTAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATATCTTCTCATGCAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>AGAATTTGAAGGGAAAGACTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGTTTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAGTCTTTCCCTTCAAATTCT</canonical_amplicon>
		<polymorphic_amplicon>GAAATATCTTCTCATGCAAAAACTTATGCAATTTTGGGTGAATTACAATATAACCGATTTTATGGCGATGACAAACCACCTTCCACTAGTAAAAAGCTTTTTTAATTTCTAAAACAAGTATTATGAAACAGAAGATACATGTWTCCTTTTTTCGATTCTTACCTTATTAATAACCACAATCTTATCCGCATTCTCGACAGTCGACAATCGATGAGCAATCAAAATGACAGTCTTTCCCTTCAAATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35680</snp_id>
        <super_contig>c010001306.Contig1</super_contig>
        <contig_pos>72372</contig_pos>
        <strand>-</strand>
        <context>TTGTGGTTAT[A/G]AATAAGGTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGCTCATCGATTGTCGACTGTCGAGAATGCGGATAAGATTGTGGTTAT</left_flank>
        <right_flank>AATAAGGTAAGAATCGAAAAAAGGAAACATGTATCTTCTGTTTCATAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAGGAAGTCAAATGTCAGGTGAAGTCTCTCGAAATTGTAAAACAAATCGAGTCATCAGAAAGTCGAGATGTTCTAGGGCTTTTAACGTGTGGAAGTTAGAATTGGACAGTTTTCAAATTAAAAATATCTCTACTTCAATGCAAAACTTTAAATGTTACTATGACGAAACATGATTAATATGATTTTTATACCATGTTTGTTGGAAGACCACTAAAACAGAAATTTGCAAAGAGTAACACTTTATAGGAGGTCAGAAACAAAGAATCGCCATTGCCCGTGCTCTCGTTCGCCAGCCAGTTGTTCTTCTTTTGGATGAAGCCACTTCGGCATTGGATGCTGAATCTGAGCATACTGTAAGTTTCAATTTGCATCGAAATATTCCGAAAATATCTTTTTCAGGTACAAGAAGCGATTTCGAAGAATTTGAAGGGAAAGACTGTCATTTTGATTGCTCATCGATTGTCGACTGTCGAGAATGCGGATAAGATTGTGGTTATTAATAAGGTAAGAATCGAAAAAAGGAAACATGTATCTTCTGTTTCATAATAATTGTTTTAAAAATCAAAAAAGCTTTTTACTAGCGGAAGGTGGTTTGTCATCGTCATAAAATCGGTTATATTGTAATTCACCCAAAATTGCATAAGTTTTTGCATGAGAAGATATTTCTCGATTTCAAAAAGTTTACAAATATTATGTCGTTACTAAAAGTTTCAATTCAAGTGTGTTTCCCTATCTTTCGTTTCTTAAACTTCACATTAAATCAACTCAAGTATTAAATTTTTGAGCTCATTTTCGAAAAAAAAACTCTTGCGATCTCAGTGATCTAGATTCAATGATAGGTTCTTCCATTTCAGAAAATTCCTGTAGTTTCAGTCATATCTTTTTGCATTTTCTTTAATAAAATTCATTGAATTTCCAGGGAAAAGTGGAACAATTGGGAAATCACAAGACACTAATGGAACAAGAAGGACTCTACAAACAACTGGTTCAACGTCAAA</canonical>
            <polymorphic>GAAAGGAAGTCAAATGTCAGGTGAAGTCTCTCGAAATTGTAAAACAAATCGAGTCATCAGAAAGTCGAGATGTTCTAGGGCTTTTAACGTGTGGAAGTTAGAATTGGACAGTTTTCAAATTAAAAATATCTCTACTTCAATGCAAAACTTTAAATGTTACTATGACGAAACATGATTAATATGATTTTTATACCATGTTTGTTGGAAGACCACTAAAACAGAAATTTGCAAAGAGTAACACTTTATAGGAGGTCAGAAACAAAGAATCGCCATTGCCCGTGCTCTCGTTCGCCAGCCAGTTGTTCTTCTTTTGGATGAAGCCACTTCGGCATTGGATGCTGAATCTGAGCATACTGTAAGTTTCAATTTGCATCGAAATATTCCGAAAATATCTTTTTCAGGTACAAGAAGCGATTTCGAAGAATTTGAAGGGAAAGACTGTCATTTTGATTGCTCATCGATTGTCGACTGTCGAGAATGCGGATAAGATTGTGGTTATRAATAAGGTAAGAATCGAAAAAAGGAAACATGTATCTTCTGTTTCATAATAATTGTTTTAAAAATCAAAAAAGCTTTTTACTAGCGGAAGGTGGTTTGTCATCGTCATAAAATCGGTTATATTGTAATTCACCCAAAATTGCATAAGTTTTTGCATGAGAAGATATTTCTCGATTTCAAAAAGTTTACAAATATTATGTCGTTACTAAAAGTTTCAATTCAAGTGTGTTTCCCTATCTTTCGTTTCTTAAACTTCACATTAAATCAACTCAAGTATTAAATTTTTGAGCTCATTTTCGAAAAAAAAACTCTTGCGATCTCAGTGATCTAGATTCAATGATAGGTTCTTCCATTTCAGAAAATTCCTGTAGTTTCAGTCATATCTTTTTGCATTTTCTTTAATAAAATTCATTGAATTTCCAGGGAAAAGTGGAACAATTGGGAAATCACAAGACACTAATGGAACAAGAAGGACTCTACAAACAACTGGTTCAACGTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 323 176</canonical_bands>
                <polymorphic_bands>824 176</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>323 189 122 103 84 58 36 30 26 17 12</canonical_bands>
                <polymorphic_bands>381 189 122 103 84 36 30 26 17 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAAAATATCTTTTTCAGGTACA</pcr_primer_p1>
		<pcr_primer_p2>GGTGAATTACAATATAACCGATTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGAAAATATCTTTTTCAGGTACAAGAAGCGATTTCGAAGAATTTGAAGGGAAAGACTGTCATTTTGATTGCTCATCGATTGTCGACTGTCGAGAATGCGGATAAGATTGTGGTTATTAATAAGGTAAGAATCGAAAAAAGGAAACATGTATCTTCTGTTTCATAATAATTGTTTTAAAAATCAAAAAAGCTTTTTACTAGCGGAAGGTGGTTTGTCATCGTCATAAAATCGGTTATATTGTAATTCACC</canonical_amplicon>
		<polymorphic_amplicon>CGAAAATATCTTTTTCAGGTACAAGAAGCGATTTCGAAGAATTTGAAGGGAAAGACTGTCATTTTGATTGCTCATCGATTGTCGACTGTCGAGAATGCGGATAAGATTGTGGTTATRAATAAGGTAAGAATCGAAAAAAGGAAACATGTATCTTCTGTTTCATAATAATTGTTTTAAAAATCAAAAAAGCTTTTTACTAGCGGAAGGTGGTTTGTCATCGTCATAAAATCGGTTATATTGTAATTCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35681</snp_id>
        <super_contig>c010001306.Contig1</super_contig>
        <contig_pos>72509</contig_pos>
        <strand>-</strand>
        <context>TTCACCCAAA[A/T]TTMCATAAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGGTGGTTTGTCATCGTCATAAAATCGGTTATATTGTAATTCACCCAAA</left_flank>
        <right_flank>TTGCATAAGTTTTTGCATGAGAAGATATTTCTCGATTTCAAAAAGTTTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATGCAAAACTTTAAATGTTACTATGACGAAACATGATTAATATGATTTTTATACCATGTTTGTTGGAAGACCACTAAAACAGAAATTTGCAAAGAGTAACACTTTATAGGAGGTCAGAAACAAAGAATCGCCATTGCCCGTGCTCTCGTTCGCCAGCCAGTTGTTCTTCTTTTGGATGAAGCCACTTCGGCATTGGATGCTGAATCTGAGCATACTGTAAGTTTCAATTTGCATCGAAATATTCCGAAAATATCTTTTTCAGGTACAAGAAGCGATTTCGAAGAATTTGAAGGGAAAGACTGTCATTTTGATTGCTCATCGATTGTCGACTGTCGAGAATGCGGATAAGATTGTGGTTATTAATAAGGTAAGAATCGAAAAAAGGAAACATGTATCTTCTGTTTCATAATAATTGTTTTAAAAATCAAAAAAGCTTTTTACTAGCGGAAGGTGGTTTGTCATCGTCATAAAATCGGTTATATTGTAATTCACCCAAAATTGCATAAGTTTTTGCATGAGAAGATATTTCTCGATTTCAAAAAGTTTACAAATATTATGTCGTTACTAAAAGTTTCAATTCAAGTGTGTTTCCCTATCTTTCGTTTCTTAAACTTCACATTAAATCAACTCAAGTATTAAATTTTTGAGCTCATTTTCGAAAAAAAAACTCTTGCGATCTCAGTGATCTAGATTCAATGATAGGTTCTTCCATTTCAGAAAATTCCTGTAGTTTCAGTCATATCTTTTTGCATTTTCTTTAATAAAATTCATTGAATTTCCAGGGAAAAGTGGAACAATTGGGAAATCACAAGACACTAATGGAACAAGAAGGACTCTACAAACAACTGGTTCAACGTCAAATGATGAGTGGAGAAGATGGTTTGGATGATGAGATCGAAGAAGTCGAACCAATTCGTGATGGAGCAGGATCCGGAAGAAGCACAAGAGCCGGAGCACGTCGAATTAGAAGTCCATCTCAATCAATCAGTCAGTCCTTC</canonical>
            <polymorphic>CAATGCAAAACTTTAAATGTTACTATGACGAAACATGATTAATATGATTTTTATACCATGTTTGTTGGAAGACCACTAAAACAGAAATTTGCAAAGAGTAACACTTTATAGGAGGTCAGAAACAAAGAATCGCCATTGCCCGTGCTCTCGTTCGCCAGCCAGTTGTTCTTCTTTTGGATGAAGCCACTTCGGCATTGGATGCTGAATCTGAGCATACTGTAAGTTTCAATTTGCATCGAAATATTCCGAAAATATCTTTTTCAGGTACAAGAAGCGATTTCGAAGAATTTGAAGGGAAAGACTGTCATTTTGATTGCTCATCGATTGTCGACTGTCGAGAATGCGGATAAGATTGTGGTTATTAATAAGGTAAGAATCGAAAAAAGGAAACATGTATCTTCTGTTTCATAATAATTGTTTTAAAAATCAAAAAAGCTTTTTACTAGCGGAAGGTGGTTTGTCATCGTCATAAAATCGGTTATATTGTAATTCACCCAAAWTTGCATAAGTTTTTGCATGAGAAGATATTTCTCGATTTCAAAAAGTTTACAAATATTATGTCGTTACTAAAAGTTTCAATTCAAGTGTGTTTCCCTATCTTTCGTTTCTTAAACTTCACATTAAATCAACTCAAGTATTAAATTTTTGAGCTCATTTTCGAAAAAAAAACTCTTGCGATCTCAGTGATCTAGATTCAATGATAGGTTCTTCCATTTCAGAAAATTCCTGTAGTTTCAGTCATATCTTTTTGCATTTTCTTTAATAAAATTCATTGAATTTCCAGGGAAAAGTGGAACAATTGGGAAATCACAAGACACTAATGGAACAAGAAGGACTCTACAAACAACTGGTTCAACGTCAAATGATGAGTGGAGAAGATGGTTTGGATGATGAGATCGAAGAAGTCGAACCAATTCGTGATGGAGCAGGATCCGGAAGAAGCACAAGAGCCGGAGCACGTCGAATTAGAAGTCCATCTCAATCAATCAGTCAGTCCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>142 127 115 85 81 79 75 63 58 51 45 37 22 11 9</canonical_bands>
                <polymorphic_bands>142 127 115 90 85 81 75 63 58 51 45 37 22 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAACATGTATCTTCTGTTTCATAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAGTTGATTTAATGTGAAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAACATGTATCTTCTGTTTCATAATAATTGTTTTAAAAATCAAAAAAGCTTTTTACTAGCGGAAGGTGGTTTGTCATCGTCATAAAATCGGTTATATTGTAATTCACCCAAAATTGCATAAGTTTTTGCATGAGAAGATATTTCTCGATTTCAAAAAGTTTACAAATATTATGTCGTTACTAAAAGTTTCAATTCAAGTGTGTTTCCCTATCTTTCGTTTCTTAAACTTCACATTAAATCAACTCAA</canonical_amplicon>
		<polymorphic_amplicon>GAAACATGTATCTTCTGTTTCATAATAATTGTTTTAAAAATCAAAAAAGCTTTTTACTAGCGGAAGGTGGTTTGTCATCGTCATAAAATCGGTTATATTGTAATTCACCCAAAWTTGCATAAGTTTTTGCATGAGAAGATATTTCTCGATTTCAAAAAGTTTACAAATATTATGTCGTTACTAAAAGTTTCAATTCAAGTGTGTTTCCCTATCTTTCGTTTCTTAAACTTCACATTAAATCAACTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35682</snp_id>
        <super_contig>c010001306.Contig1</super_contig>
        <contig_pos>72512</contig_pos>
        <strand>-</strand>
        <context>ACCCAAAWTT[A/C]CATAAGTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTGGTTTGTCATCGTCATAAAATCGGTTATATTGTAATTCACCCAAAATT</left_flank>
        <right_flank>CATAAGTTTTTGCATGAGAAGATATTTCTCGATTTCAAAAAGTTTACAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCAAAACTTTAAATGTTACTATGACGAAACATGATTAATATGATTTTTATACCATGTTTGTTGGAAGACCACTAAAACAGAAATTTGCAAAGAGTAACACTTTATAGGAGGTCAGAAACAAAGAATCGCCATTGCCCGTGCTCTCGTTCGCCAGCCAGTTGTTCTTCTTTTGGATGAAGCCACTTCGGCATTGGATGCTGAATCTGAGCATACTGTAAGTTTCAATTTGCATCGAAATATTCCGAAAATATCTTTTTCAGGTACAAGAAGCGATTTCGAAGAATTTGAAGGGAAAGACTGTCATTTTGATTGCTCATCGATTGTCGACTGTCGAGAATGCGGATAAGATTGTGGTTATTAATAAGGTAAGAATCGAAAAAAGGAAACATGTATCTTCTGTTTCATAATAATTGTTTTAAAAATCAAAAAAGCTTTTTACTAGCGGAAGGTGGTTTGTCATCGTCATAAAATCGGTTATATTGTAATTCACCCAAAATTGCATAAGTTTTTGCATGAGAAGATATTTCTCGATTTCAAAAAGTTTACAAATATTATGTCGTTACTAAAAGTTTCAATTCAAGTGTGTTTCCCTATCTTTCGTTTCTTAAACTTCACATTAAATCAACTCAAGTATTAAATTTTTGAGCTCATTTTCGAAAAAAAAACTCTTGCGATCTCAGTGATCTAGATTCAATGATAGGTTCTTCCATTTCAGAAAATTCCTGTAGTTTCAGTCATATCTTTTTGCATTTTCTTTAATAAAATTCATTGAATTTCCAGGGAAAAGTGGAACAATTGGGAAATCACAAGACACTAATGGAACAAGAAGGACTCTACAAACAACTGGTTCAACGTCAAATGATGAGTGGAGAAGATGGTTTGGATGATGAGATCGAAGAAGTCGAACCAATTCGTGATGGAGCAGGATCCGGAAGAAGCACAAGAGCCGGAGCACGTCGAATTAGAAGTCCATCTCAATCAATCAGTCAGTCCTTCTTG</canonical>
            <polymorphic>TGCAAAACTTTAAATGTTACTATGACGAAACATGATTAATATGATTTTTATACCATGTTTGTTGGAAGACCACTAAAACAGAAATTTGCAAAGAGTAACACTTTATAGGAGGTCAGAAACAAAGAATCGCCATTGCCCGTGCTCTCGTTCGCCAGCCAGTTGTTCTTCTTTTGGATGAAGCCACTTCGGCATTGGATGCTGAATCTGAGCATACTGTAAGTTTCAATTTGCATCGAAATATTCCGAAAATATCTTTTTCAGGTACAAGAAGCGATTTCGAAGAATTTGAAGGGAAAGACTGTCATTTTGATTGCTCATCGATTGTCGACTGTCGAGAATGCGGATAAGATTGTGGTTATTAATAAGGTAAGAATCGAAAAAAGGAAACATGTATCTTCTGTTTCATAATAATTGTTTTAAAAATCAAAAAAGCTTTTTACTAGCGGAAGGTGGTTTGTCATCGTCATAAAATCGGTTATATTGTAATTCACCCAAAATTMCATAAGTTTTTGCATGAGAAGATATTTCTCGATTTCAAAAAGTTTACAAATATTATGTCGTTACTAAAAGTTTCAATTCAAGTGTGTTTCCCTATCTTTCGTTTCTTAAACTTCACATTAAATCAACTCAAGTATTAAATTTTTGAGCTCATTTTCGAAAAAAAAACTCTTGCGATCTCAGTGATCTAGATTCAATGATAGGTTCTTCCATTTCAGAAAATTCCTGTAGTTTCAGTCATATCTTTTTGCATTTTCTTTAATAAAATTCATTGAATTTCCAGGGAAAAGTGGAACAATTGGGAAATCACAAGACACTAATGGAACAAGAAGGACTCTACAAACAACTGGTTCAACGTCAAATGATGAGTGGAGAAGATGGTTTGGATGATGAGATCGAAGAAGTCGAACCAATTCGTGATGGAGCAGGATCCGGAAGAAGCACAAGAGCCGGAGCACGTCGAATTAGAAGTCCATCTCAATCAATCAGTCAGTCCTTCTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>270 252 236 142 86 12 2</canonical_bands>
                <polymorphic_bands>282 252 236 142 86 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAACATGTATCTTCTGTTTCATAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAGTTGATTTAATGTGAAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAACATGTATCTTCTGTTTCATAATAATTGTTTTAAAAATCAAAAAAGCTTTTTACTAGCGGAAGGTGGTTTGTCATCGTCATAAAATCGGTTATATTGTAATTCACCCAAAATTGCATAAGTTTTTGCATGAGAAGATATTTCTCGATTTCAAAAAGTTTACAAATATTATGTCGTTACTAAAAGTTTCAATTCAAGTGTGTTTCCCTATCTTTCGTTTCTTAAACTTCACATTAAATCAACTCAA</canonical_amplicon>
		<polymorphic_amplicon>GAAACATGTATCTTCTGTTTCATAATAATTGTTTTAAAAATCAAAAAAGCTTTTTACTAGCGGAAGGTGGTTTGTCATCGTCATAAAATCGGTTATATTGTAATTCACCCAAAATTMCATAAGTTTTTGCATGAGAAGATATTTCTCGATTTCAAAAAGTTTACAAATATTATGTCGTTACTAAAAGTTTCAATTCAAGTGTGTTTCCCTATCTTTCGTTTCTTAAACTTCACATTAAATCAACTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35683</snp_id>
        <super_contig>c010001306.Contig1</super_contig>
        <contig_pos>74675</contig_pos>
        <strand>-</strand>
        <context>AACTATGATG[A/G]TCGKTTTCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCGACTAGCTCTCTCTTTATTGTCTCACTTATTCTCTCTAACTATGATG</left_flank>
        <right_flank>TCGATTTCCGTTCTCTTATGGCTGAAATCCATGGAGTCAAACTCGAAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACTTTGCCAACATGGGTGAGAACCAGCTCCTTTTACTATTTTTCATGTATCTCTGATCTGAAACTCGAAACTAAAGTTAATTTTTATAAACTCTTTAAACTTCATAAATTGCATTGTCTTCTAATAGTTAGATATGCGCAGCGTCATGTTTCTTTATAAGTCCACAGAAATGTACGTCAACCCAATTTTACGGTAGACAAGTTATGAAAAATCAGCCCCTATGGTAATTTTTAATTTTAAACCGAATAGTGTTTTCAAAAATTTTCTAGCTTCTTCACTTTTGGCTGTAAATAGCTTCACCTGTGATTTCTTCCTAGGAGCACGCTAACCCTCCCAGGCAGACATCCAGACGACGAGATATTGTGGGCGGGGCAAGTCTGCGGGCCACTAAGTCCCGCCTCCAGCCTATATAAGGAACTCAAAAATTGTCATTCATTACCCAGTCATCTCGACTAGCTCTCTCTTTATTGTCTCACTTATTCTCTCTAACTATGATGTTCGATTTCCGTTCTCTTATGGCTGAAATCCATGGAGTCAAACTCGAAGAAGACAACATTGGAATCAAGAAGCGCGTGAGAGCTTCTGCTCAATATCTTCGAAACGAAACGGATCTCTTCCTGGAGCACAGTATTGAAATTCAAGGAGAGAATCCAGAACGTCCTCGTCTTCCAATGTGGTTCACAATTGCTTTCAATGAACTCAAATCGGAATTAAATTCAATCAATCATCAGGATTCTCTACTCAACATGTTTCCACGTATGACCCAAATGGGATTGCTCACTCAATTCGGAGAGAACGATGATTTCCCAAAACAAGGAGAGAATGGATTATTGGAGGAGGATCATAATACATTGGAATACCAAATTCATCAATTCTTGAAAGATGTGACTGTGTATGTTTGGAATGCTCATGTCTTCACAAAACAAGTCAAGGATCTTCCAAAAGTCTACTTCATCACTCTCGATTATTTCAAAAGAAAAGCCGAATCGGAAGAAATG</canonical>
            <polymorphic>CTACTTTGCCAACATGGGTGAGAACCAGCTCCTTTTACTATTTTTCATGTATCTCTGATCTGAAACTCGAAACTAAAGTTAATTTTTATAAACTCTTTAAACTTCATAAATTGCATTGTCTTCTAATAGTTAGATATGCGCAGCGTCATGTTTCTTTATAAGTCCACAGAAATGTACGTCAACCCAATTTTACGGTAGACAAGTTATGAAAAATCAGCCCCTATGGTAATTTTTAATTTTAAACCGAATAGTGTTTTCAAAAATTTTCTAGCTTCTTCACTTTTGGCTGTAAATAGCTTCACCTGTGATTTCTTCCTAGGAGCACGCTAACCCTCCCAGGCAGACATCCAGACGACGAGATATTGTGGGCGGGGCAAGTCTGCGGGCCACTAAGTCCCGCCTCCAGCCTATATAAGGAACTCAAAAATTGTCATTCATTACCCAGTCATCTCGACTAGCTCTCTCTTTATTGTCTCACTTATTCTCTCTAACTATGATGRTCGATTTCCGTTCTCTTATGGCTGAAATCCATGGAGTCAAACTCGAAGAAGACAACATTGGAATCAAGAAGCGCGTGAGAGCTTCTGCTCAATATCTTCGAAACGAAACGGATCTCTTCCTGGAGCACAGTATTGAAATTCAAGGAGAGAATCCAGAACGTCCTCGTCTTCCAATGTGGTTCACAATTGCTTTCAATGAACTCAAATCGGAATTAAATTCAATCAATCATCAGGATTCTCTACTCAACATGTTTCCACGTATGACCCAAATGGGATTGCTCACTCAATTCGGAGAGAACGATGATTTCCCAAAACAAGGAGAGAATGGATTATTGGAGGAGGATCATAATACATTGGAATACCAAATTCATCAATTCTTGAAAGATGTGACTGTGTATGTTTGGAATGCTCATGTCTTCACAAAACAAGTCAAGGATCTTCCAAAAGTCTACTTCATCACTCTCGATTATTTCAAAAGAAAAGCCGAATCGGAAGAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGGAACTCAAAAATTGTCATT</pcr_primer_p1>
		<pcr_primer_p2>TTCTGGATTCTCTCCTTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TAAGGAACTCAAAAATTGTCATTCATTACCCAGTCATCTCGACTAGCTCTCTCTTTATTGTCTCACTTATTCTCTCTAACTATGATGTTCGATTTCCGTTCTCTTATGGCTGAAATCCATGGAGTCAAACTCGAAGAAGACAACATTGGAATCAAGAAGCGCGTGAGAGCTTCTGCTCAATATCTTCGAAACGAAACGGATCTCTTCCTGGAGCACAGTATTGAAATTCAAGGAGAGAATCCAGAA</canonical_amplicon>
		<polymorphic_amplicon>TAAGGAACTCAAAAATTGTCATTCATTACCCAGTCATCTCGACTAGCTCTCTCTTTATTGTCTCACTTATTCTCTCTAACTATGATGRTCGATTTCCGTTCTCTTATGGCTGAAATCCATGGAGTCAAACTCGAAGAAGACAACATTGGAATCAAGAAGCGCGTGAGAGCTTCTGCTCAATATCTTCGAAACGAAACGGATCTCTTCCTGGAGCACAGTATTGAAATTCAAGGAGAGAATCCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35684</snp_id>
        <super_contig>c010001306.Contig1</super_contig>
        <contig_pos>74679</contig_pos>
        <strand>-</strand>
        <context>ATGATGRTCG[G/T]TTTCCGTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTAGCTCTCTCTTTATTGTCTCACTTATTCTCTCTAACTATGATGTTCG</left_flank>
        <right_flank>TTTCCGTTCTCTTATGGCTGAAATCCATGGAGTCAAACTCGAAGAAGACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGCCAACATGGGTGAGAACCAGCTCCTTTTACTATTTTTCATGTATCTCTGATCTGAAACTCGAAACTAAAGTTAATTTTTATAAACTCTTTAAACTTCATAAATTGCATTGTCTTCTAATAGTTAGATATGCGCAGCGTCATGTTTCTTTATAAGTCCACAGAAATGTACGTCAACCCAATTTTACGGTAGACAAGTTATGAAAAATCAGCCCCTATGGTAATTTTTAATTTTAAACCGAATAGTGTTTTCAAAAATTTTCTAGCTTCTTCACTTTTGGCTGTAAATAGCTTCACCTGTGATTTCTTCCTAGGAGCACGCTAACCCTCCCAGGCAGACATCCAGACGACGAGATATTGTGGGCGGGGCAAGTCTGCGGGCCACTAAGTCCCGCCTCCAGCCTATATAAGGAACTCAAAAATTGTCATTCATTACCCAGTCATCTCGACTAGCTCTCTCTTTATTGTCTCACTTATTCTCTCTAACTATGATGTTCGATTTCCGTTCTCTTATGGCTGAAATCCATGGAGTCAAACTCGAAGAAGACAACATTGGAATCAAGAAGCGCGTGAGAGCTTCTGCTCAATATCTTCGAAACGAAACGGATCTCTTCCTGGAGCACAGTATTGAAATTCAAGGAGAGAATCCAGAACGTCCTCGTCTTCCAATGTGGTTCACAATTGCTTTCAATGAACTCAAATCGGAATTAAATTCAATCAATCATCAGGATTCTCTACTCAACATGTTTCCACGTATGACCCAAATGGGATTGCTCACTCAATTCGGAGAGAACGATGATTTCCCAAAACAAGGAGAGAATGGATTATTGGAGGAGGATCATAATACATTGGAATACCAAATTCATCAATTCTTGAAAGATGTGACTGTGTATGTTTGGAATGCTCATGTCTTCACAAAACAAGTCAAGGATCTTCCAAAAGTCTACTTCATCACTCTCGATTATTTCAAAAGAAAAGCCGAATCGGAAGAAATGAAAC</canonical>
            <polymorphic>TTTGCCAACATGGGTGAGAACCAGCTCCTTTTACTATTTTTCATGTATCTCTGATCTGAAACTCGAAACTAAAGTTAATTTTTATAAACTCTTTAAACTTCATAAATTGCATTGTCTTCTAATAGTTAGATATGCGCAGCGTCATGTTTCTTTATAAGTCCACAGAAATGTACGTCAACCCAATTTTACGGTAGACAAGTTATGAAAAATCAGCCCCTATGGTAATTTTTAATTTTAAACCGAATAGTGTTTTCAAAAATTTTCTAGCTTCTTCACTTTTGGCTGTAAATAGCTTCACCTGTGATTTCTTCCTAGGAGCACGCTAACCCTCCCAGGCAGACATCCAGACGACGAGATATTGTGGGCGGGGCAAGTCTGCGGGCCACTAAGTCCCGCCTCCAGCCTATATAAGGAACTCAAAAATTGTCATTCATTACCCAGTCATCTCGACTAGCTCTCTCTTTATTGTCTCACTTATTCTCTCTAACTATGATGTTCGKTTTCCGTTCTCTTATGGCTGAAATCCATGGAGTCAAACTCGAAGAAGACAACATTGGAATCAAGAAGCGCGTGAGAGCTTCTGCTCAATATCTTCGAAACGAAACGGATCTCTTCCTGGAGCACAGTATTGAAATTCAAGGAGAGAATCCAGAACGTCCTCGTCTTCCAATGTGGTTCACAATTGCTTTCAATGAACTCAAATCGGAATTAAATTCAATCAATCATCAGGATTCTCTACTCAACATGTTTCCACGTATGACCCAAATGGGATTGCTCACTCAATTCGGAGAGAACGATGATTTCCCAAAACAAGGAGAGAATGGATTATTGGAGGAGGATCATAATACATTGGAATACCAAATTCATCAATTCTTGAAAGATGTGACTGTGTATGTTTGGAATGCTCATGTCTTCACAAAACAAGTCAAGGATCTTCCAAAAGTCTACTTCATCACTCTCGATTATTTCAAAAGAAAAGCCGAATCGGAAGAAATGAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>384 365 64 55 50 42 40</canonical_bands>
                <polymorphic_bands>384 365 92 64 55 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAGGAACTCAAAAATTGTCATT</pcr_primer_p1>
		<pcr_primer_p2>TTCTGGATTCTCTCCTTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TAAGGAACTCAAAAATTGTCATTCATTACCCAGTCATCTCGACTAGCTCTCTCTTTATTGTCTCACTTATTCTCTCTAACTATGATGTTCGATTTCCGTTCTCTTATGGCTGAAATCCATGGAGTCAAACTCGAAGAAGACAACATTGGAATCAAGAAGCGCGTGAGAGCTTCTGCTCAATATCTTCGAAACGAAACGGATCTCTTCCTGGAGCACAGTATTGAAATTCAAGGAGAGAATCCAGAA</canonical_amplicon>
		<polymorphic_amplicon>TAAGGAACTCAAAAATTGTCATTCATTACCCAGTCATCTCGACTAGCTCTCTCTTTATTGTCTCACTTATTCTCTCTAACTATGATGTTCGKTTTCCGTTCTCTTATGGCTGAAATCCATGGAGTCAAACTCGAAGAAGACAACATTGGAATCAAGAAGCGCGTGAGAGCTTCTGCTCAATATCTTCGAAACGAAACGGATCTCTTCCTGGAGCACAGTATTGAAATTCAAGGAGAGAATCCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35685</snp_id>
        <super_contig>c010001306.Contig1</super_contig>
        <contig_pos>114110</contig_pos>
        <strand>+</strand>
        <context>ATACTGACTT[A/G]GATACGGATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGTCAAAAGATGGAAGCTTGGAAATTCCTCATAGTTTTAATACTGACTT</left_flank>
        <right_flank>GATACGGATAGGCCGGATAACGCGCTACGATTCAGTTTGACTAGTTCACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAATGCAAGGAATATAAAACGAAAACTGGTCAAGGAAGACATATTAGATGTGTTTCGTTTTGTTGCCGGAATATCTGAAAACTTGACAGCGCCCGTCTGCGTGGCAGATATTTGCGGAGCTTTCCTTGAAAAAACGCAATCCATGGAGAGCATAAAACAATTGGCAGGAAGGTGATAGCTTGCATCGAAATGGACGAAATCAAAGATTATTTTTCAATTTTTACAGAATTTATCACGGACGCGCGAACGTACAGAACATGAAAGAGTTTGACACTGAAACGAAAGTGAAGATTCTTTATGCACTTCGAGTTCCAATCCATTTTAAGTGTCTTTCCGAGTGAGTGAGATTTTCAGAGAATATTTTCAGGGGAATAGCACAAAGTTTGATTTCAGTATTGAGAAAATTGGAAACGTAGAATTGGATTCGAAGCAAAGAATCACAAAATACGTGTCAAAAGATGGAAGCTTGGAAATTCCTCATAGTTTTAATACTGACTTGGATACGGATAGGCCGGATAACGCGCTACGATTCAGTTTGACTAGTTCACTGATTACTACGAGAACGACACTGGAGACGATTCCTAAGGAAAAGCCAGAAGAACCTCCAATAAAGAGAACGAGAACGGAAAAGTCTCCTGCACCAGTGGAACCACCACAAAAAGTAGTTTCTAAAGAAAAATTCTGCGGGTCTGACAAAATGAAGGTTAGCACATTTCCTCTGCGTCTCAACCTTCAATTCTTAGACAGCGATAATACCAGTTGCTGAAAAACCAGAAGGACCGCCGACCACAAGTCTTTGTTACTTTCTAAACATTTTCCAAAGTGCTCTGCGGACGTTGGACTCACCGCTTCTAGCCGAGCCGTATAAGAAAATGGAGGATTTTATTCATCAGTTAGAAGGGAATGATCATATAATCCCTGCGAAAACTGTGCTCAATTTTGCTGAATCTTGTTTTTTATCTGTAACAAAAAGCTTATCAGTCAAATTGGAGCCGGGAG</canonical>
            <polymorphic>ATAATGCAAGGAATATAAAACGAAAACTGGTCAAGGAAGACATATTAGATGTGTTTCGTTTTGTTGCCGGAATATCTGAAAACTTGACAGCGCCCGTCTGCGTGGCAGATATTTGCGGAGCTTTCCTTGAAAAAACGCAATCCATGGAGAGCATAAAACAATTGGCAGGAAGGTGATAGCTTGCATCGAAATGGACGAAATCAAAGATTATTTTTCAATTTTTACAGAATTTATCACGGACGCGCGAACGTACAGAACATGAAAGAGTTTGACACTGAAACGAAAGTGAAGATTCTTTATGCACTTCGAGTTCCAATCCATTTTAAGTGTCTTTCCGAGTGAGTGAGATTTTCAGAGAATATTTTCAGGGGAATAGCACAAAGTTTGATTTCAGTATTGAGAAAATTGGAAACGTAGAATTGGATTCGAAGCAAAGAATCACAAAATACGTGTCAAAAGATGGAAGCTTGGAAATTCCTCATAGTTTTAATACTGACTTRGATACGGATAGGCCGGATAACGCGCTACGATTCAGTTTGACTAGTTCACTGATTACTACGAGAACGACACTGGAGACGATTCCTAAGGAAAAGCCAGAAGAACCTCCAATAAAGAGAACGAGAACGGAAAAGTCTCCTGCACCAGTGGAACCACCACAAAAAGTAGTTTCTAAAGAAAAATTCTGCGGGTCTGACAAAATGAAGGTTAGCACATTTCCTCTGCGTCTCAACCTTCAATTCTTAGACAGCGATAATACCAGTTGCTGAAAAACCAGAAGGACCGCCGACCACAAGTCTTTGTTACTTTCTAAACATTTTCCAAAGTGCTCTGCGGACGTTGGACTCACCGCTTCTAGCCGAGCCGTATAAGAAAATGGAGGATTTTATTCATCAGTTAGAAGGGAATGATCATATAATCCCTGCGAAAACTGTGCTCAATTTTGCTGAATCTTGTTTTTTATCTGTAACAAAAAGCTTATCAGTCAAATTGGAGCCGGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAGCACAAAGTTTGATTTCAG</pcr_primer_p1>
		<pcr_primer_p2>GTTCTCTTTATTGGAGGTTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATAGCACAAAGTTTGATTTCAGTATTGAGAAAATTGGAAACGTAGAATTGGATTCGAAGCAAAGAATCACAAAATACGTGTCAAAAGATGGAAGCTTGGAAATTCCTCATAGTTTTAATACTGACTTGGATACGGATAGGCCGGATAACGCGCTACGATTCAGTTTGACTAGTTCACTGATTACTACGAGAACGACACTGGAGACGATTCCTAAGGAAAAGCCAGAAGAACCTCCAATAAAGAGAAC</canonical_amplicon>
		<polymorphic_amplicon>AATAGCACAAAGTTTGATTTCAGTATTGAGAAAATTGGAAACGTAGAATTGGATTCGAAGCAAAGAATCACAAAATACGTGTCAAAAGATGGAAGCTTGGAAATTCCTCATAGTTTTAATACTGACTTRGATACGGATAGGCCGGATAACGCGCTACGATTCAGTTTGACTAGTTCACTGATTACTACGAGAACGACACTGGAGACGATTCCTAAGGAAAAGCCAGAAGAACCTCCAATAAAGAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35686</snp_id>
        <super_contig>c010001306.Contig1</super_contig>
        <contig_pos>114132</contig_pos>
        <strand>+</strand>
        <context>GCCGGATAAC[G/T]CGCTACGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATTCCTCATAGTTTTAATACTGACTTGGATACGGATAGGCCGGATAAC</left_flank>
        <right_flank>CGCTACGATTCAGTTTGACTAGTTCACTGATTACTACGAGAACGACACTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACTGGTCAAGGAAGACATATTAGATGTGTTTCGTTTTGTTGCCGGAATATCTGAAAACTTGACAGCGCCCGTCTGCGTGGCAGATATTTGCGGAGCTTTCCTTGAAAAAACGCAATCCATGGAGAGCATAAAACAATTGGCAGGAAGGTGATAGCTTGCATCGAAATGGACGAAATCAAAGATTATTTTTCAATTTTTACAGAATTTATCACGGACGCGCGAACGTACAGAACATGAAAGAGTTTGACACTGAAACGAAAGTGAAGATTCTTTATGCACTTCGAGTTCCAATCCATTTTAAGTGTCTTTCCGAGTGAGTGAGATTTTCAGAGAATATTTTCAGGGGAATAGCACAAAGTTTGATTTCAGTATTGAGAAAATTGGAAACGTAGAATTGGATTCGAAGCAAAGAATCACAAAATACGTGTCAAAAGATGGAAGCTTGGAAATTCCTCATAGTTTTAATACTGACTTGGATACGGATAGGCCGGATAACGCGCTACGATTCAGTTTGACTAGTTCACTGATTACTACGAGAACGACACTGGAGACGATTCCTAAGGAAAAGCCAGAAGAACCTCCAATAAAGAGAACGAGAACGGAAAAGTCTCCTGCACCAGTGGAACCACCACAAAAAGTAGTTTCTAAAGAAAAATTCTGCGGGTCTGACAAAATGAAGGTTAGCACATTTCCTCTGCGTCTCAACCTTCAATTCTTAGACAGCGATAATACCAGTTGCTGAAAAACCAGAAGGACCGCCGACCACAAGTCTTTGTTACTTTCTAAACATTTTCCAAAGTGCTCTGCGGACGTTGGACTCACCGCTTCTAGCCGAGCCGTATAAGAAAATGGAGGATTTTATTCATCAGTTAGAAGGGAATGATCATATAATCCCTGCGAAAACTGTGCTCAATTTTGCTGAATCTTGTTTTTTATCTGTAACAAAAAGCTTATCAGTCAAATTGGAGCCGGGAGAAGAGACAATCAGTCTCCGAGA</canonical>
            <polymorphic>AAAACTGGTCAAGGAAGACATATTAGATGTGTTTCGTTTTGTTGCCGGAATATCTGAAAACTTGACAGCGCCCGTCTGCGTGGCAGATATTTGCGGAGCTTTCCTTGAAAAAACGCAATCCATGGAGAGCATAAAACAATTGGCAGGAAGGTGATAGCTTGCATCGAAATGGACGAAATCAAAGATTATTTTTCAATTTTTACAGAATTTATCACGGACGCGCGAACGTACAGAACATGAAAGAGTTTGACACTGAAACGAAAGTGAAGATTCTTTATGCACTTCGAGTTCCAATCCATTTTAAGTGTCTTTCCGAGTGAGTGAGATTTTCAGAGAATATTTTCAGGGGAATAGCACAAAGTTTGATTTCAGTATTGAGAAAATTGGAAACGTAGAATTGGATTCGAAGCAAAGAATCACAAAATACGTGTCAAAAGATGGAAGCTTGGAAATTCCTCATAGTTTTAATACTGACTTGGATACGGATAGGCCGGATAACKCGCTACGATTCAGTTTGACTAGTTCACTGATTACTACGAGAACGACACTGGAGACGATTCCTAAGGAAAAGCCAGAAGAACCTCCAATAAAGAGAACGAGAACGGAAAAGTCTCCTGCACCAGTGGAACCACCACAAAAAGTAGTTTCTAAAGAAAAATTCTGCGGGTCTGACAAAATGAAGGTTAGCACATTTCCTCTGCGTCTCAACCTTCAATTCTTAGACAGCGATAATACCAGTTGCTGAAAAACCAGAAGGACCGCCGACCACAAGTCTTTGTTACTTTCTAAACATTTTCCAAAGTGCTCTGCGGACGTTGGACTCACCGCTTCTAGCCGAGCCGTATAAGAAAATGGAGGATTTTATTCATCAGTTAGAAGGGAATGATCATATAATCCCTGCGAAAACTGTGCTCAATTTTGCTGAATCTTGTTTTTTATCTGTAACAAAAAGCTTATCAGTCAAATTGGAGCCGGGAGAAGAGACAATCAGTCTCCGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 278 220 2</canonical_bands>
                <polymorphic_bands>778 220 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>498 280 152 70</canonical_bands>
                <polymorphic_bands>778 152 70</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAGCACAAAGTTTGATTTCAG</pcr_primer_p1>
		<pcr_primer_p2>GTTCTCTTTATTGGAGGTTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATAGCACAAAGTTTGATTTCAGTATTGAGAAAATTGGAAACGTAGAATTGGATTCGAAGCAAAGAATCACAAAATACGTGTCAAAAGATGGAAGCTTGGAAATTCCTCATAGTTTTAATACTGACTTGGATACGGATAGGCCGGATAACGCGCTACGATTCAGTTTGACTAGTTCACTGATTACTACGAGAACGACACTGGAGACGATTCCTAAGGAAAAGCCAGAAGAACCTCCAATAAAGAGAAC</canonical_amplicon>
		<polymorphic_amplicon>AATAGCACAAAGTTTGATTTCAGTATTGAGAAAATTGGAAACGTAGAATTGGATTCGAAGCAAAGAATCACAAAATACGTGTCAAAAGATGGAAGCTTGGAAATTCCTCATAGTTTTAATACTGACTTGGATACGGATAGGCCGGATAACKCGCTACGATTCAGTTTGACTAGTTCACTGATTACTACGAGAACGACACTGGAGACGATTCCTAAGGAAAAGCCAGAAGAACCTCCAATAAAGAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35687</snp_id>
        <super_contig>c010001349.Contig1</super_contig>
        <contig_pos>4857</contig_pos>
        <strand></strand>
        <context>gtggcgcaca[G/A]ttacccgggt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAACAGTTGCTCAGGTTAATTTTTTGTTGGGACTTACAAGGTGGCGCACA</left_flank>
        <right_flank>TTACCCGGGTTGGTGAAAACGGATCTATCTTCAGAAATAAGTGTCCTAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGTCAAAAAAATTGCAATTGGAGCAGTATATAACCTTCTAAATGTGGGTTAACTTCTGATATTTTCTTCAAAAGGGAAGTTAGAACACGCAGACTTCTAGAAGCGAAGCTAAAAATGCGGAAAAGTTTTGAAAAGAAAAACGGAGCTTGTCATGAATCTCTACTATAAAAATCGGCTGGTTTTTTTTCAAATTCGGAAGGAAAATAAAATTTTATGGCCATAATTATTGTTCTGCTTAAATTTTTCCGTTGGAATCTCGATTTTTATCAAATTTCAGACAAATTTTCATGACATCATTATTCAAAAAAATTCAGACAGATATTTCGAGATATTTAATTCAAATTGGTCACATTTCGGTGGGGAACCATCAATTTGTGGATAGGAAAAAACAGATGTTTCGATTTTCATAAATGTTTTGAAAAAATAGGTTCCGGTATGATAAAATTGGGAACAGTTGCTCAGGTTAATTTTTTGTTGGGACTTACAAGGTGGCGCACAGTTACCCGGGTTGGTGAAAACGGATCTATCTTCAGAAATAAGTGTCCTAGAAGCACAAGAACTGTCAGAAATATAGTTTGAGTTCGATTCAAAGTTACTGGATGTTTCAAATCGATTCCTCCAGTCTAGGTATAGCTATGATTGTCCAAAGATGGACGGTGTGATTTTTGCACGCCATTGTGATTTTTTAAAGATGAAGCAACTTTGACTACAAATAACTCAGATGAAATGTGATCAAATAATTTAAAACTTGGCCAGTTTACTGATGAATTATGGCTCTAAAAATTAGCAGAAGTATTTGCGGGGATTCAAAAAGTGACTGTTTTTAGAGCCACAACAATAAAAAAGGATTTTGAAAAAATGGGAATATTATAAATAACCCTTCATGTTTGTTTTATTCTTAAGAAATTAAGAAAAATTAATAAGACAGAGTGTCCATCGGGAATGATAAGAGCTGAGATCACTAGAATTTCATCCTTCTAATCTATCTCAAAGTCTAAA</canonical>
            <polymorphic>AGGTCAAAAAAATTGCAATTGGAGCAGTATATAACCTTCTAAATGTGGGTTAACTTCTGATATTTTCTTCAAAAGGGAAGTTAGAACACGCAGACTTCTAGAAGCGAAGCTAAAAATGCGGAAAAGTTTTGAAAAGAAAAACGGAGCTTGTCATGAATCTCTACTATAAAAATCGGCTGGTTTTTTTTCAAATTCGGAAGGAAAATAAAATTTTATGGCCATAATTATTGTTCTGCTTAAATTTTTCCGTTGGAATCTCGATTTTTATCAAATTTCAGACAAATTTTCATGACATCATTATTCAAAAAAATTCAGACAGATATTTCGAGATATTTAATTCAAATTGGTCACATTTCGGTGGGGAACCATCAATTTGTGGATAGGAAAAAACAGATGTTTCGATTTTCATAAATGTTTTGAAAAAATAGGTTCCGGTATGATAAAATTGGGAACAGTTGCTCAGGTTAATTTTTTGTTGGGACTTACAAGGTGGCGCACARTTACCCGGGTTGGTGAAAACGGATCTATCTTCAGAAATAAGTGTCCTAGAAGCACAAGAACTGTCAGAAATATAGTTTGAGTTCGATTCAAAGTTACTGGATGTTTCAAATCGATTCCTCCAGTCTAGGTATAGCTATGATTGTCCAAAGATGGACGGTGTGATTTTTGCACGCCATTGTGATTTTTTAAAGATGAAGCAACTTTGACTACAAATAACTCAGATGAAATGTGATCAAATAATTTAAAACTTGGCCAGTTTACTGATGAATTATGGCTCTAAAAATTAGCAGAAGTATTTGCGGGGATTCAAAAAGTGACTGTTTTTAGAGCCACAACAATAAAAAAGGATTTTGAAAAAATGGGAATATTATAAATAACCCTTCATGTTTGTTTTATTCTTAAGAAATTAAGAAAAATTAATAAGACAGAGTGTCCATCGGGAATGATAAGAGCTGAGATCACTAGAATTTCATCCTTCTAATCTATCTCAAAGTCTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>454 180 163 95 63 45</canonical_bands>
                <polymorphic_bands>454 180 163 108 95</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>346 222 186 153 93</canonical_bands>
                <polymorphic_bands>346 246 222 186</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAACAGTTGCTCAGGTTAAT</pcr_primer_p1>
		<pcr_primer_p2>CGCAAATACTTCTGCTAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>354</pcr_amplicon_size>
		<canonical_amplicon>GGAACAGTTGCTCAGGTTAATTTTTTGTTGGGACTTACAAGGTGGCGCACAGTTACCCGGGTTGGTGAAAACGGATCTATCTTCAGAAATAAGTGTCCTAGAAGCACAAGAACTGTCAGAAATATAGTTTGAGTTCGATTCAAAGTTACTGGATGTTTCAAATCGATTCCTCCAGTCTAGGTATAGCTATGATTGTCCAAAGATGGACGGTGTGATTTTTGCACGCCATTGTGATTTTTTAAAGATGAAGCAACTTTGACTACAAATAACTCAGATGAAATGTGATCAAATAATTTAAAACTTGGCCAGTTTACTGATGAATTATGGCTCTAAAAATTAGCAGAAGTATTTGCG</canonical_amplicon>
		<polymorphic_amplicon>GGAACAGTTGCTCAGGTTAATTTTTTGTTGGGACTTACAAGGTGGCGCACARTTACCCGGGTTGGTGAAAACGGATCTATCTTCAGAAATAAGTGTCCTAGAAGCACAAGAACTGTCAGAAATATAGTTTGAGTTCGATTCAAAGTTACTGGATGTTTCAAATCGATTCCTCCAGTCTAGGTATAGCTATGATTGTCCAAAGATGGACGGTGTGATTTTTGCACGCCATTGTGATTTTTTAAAGATGAAGCAACTTTGACTACAAATAACTCAGATGAAATGTGATCAAATAATTTAAAACTTGGCCAGTTTACTGATGAATTATGGCTCTAAAAATTAGCAGAAGTATTTGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35688</snp_id>
        <super_contig>c010001349.Contig1</super_contig>
        <contig_pos>5021</contig_pos>
        <strand></strand>
        <context>gacggtgtga[T/A]ttttgcacgc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATTCCTCCAGTCTAGGTATAGCTATGATTGTCCAAAGATGGACGGTGTGA</left_flank>
        <right_flank>TTTTGCACGCCATTGTGATTTTTTAAAGATGAAGCAACTTTGACTACAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAAAAATCGGCTGGTTTTTTTTCAAATTCGGAAGGAAAATAAAATTTTATGGCCATAATTATTGTTCTGCTTAAATTTTTCCGTTGGAATCTCGATTTTTATCAAATTTCAGACAAATTTTCATGACATCATTATTCAAAAAAATTCAGACAGATATTTCGAGATATTTAATTCAAATTGGTCACATTTCGGTGGGGAACCATCAATTTGTGGATAGGAAAAAACAGATGTTTCGATTTTCATAAATGTTTTGAAAAAATAGGTTCCGGTATGATAAAATTGGGAACAGTTGCTCAGGTTAATTTTTTGTTGGGACTTACAAGGTGGCGCACAGTTACCCGGGTTGGTGAAAACGGATCTATCTTCAGAAATAAGTGTCCTAGAAGCACAAGAACTGTCAGAAATATAGTTTGAGTTCGATTCAAAGTTACTGGATGTTTCAAATCGATTCCTCCAGTCTAGGTATAGCTATGATTGTCCAAAGATGGACGGTGTGATTTTTGCACGCCATTGTGATTTTTTAAAGATGAAGCAACTTTGACTACAAATAACTCAGATGAAATGTGATCAAATAATTTAAAACTTGGCCAGTTTACTGATGAATTATGGCTCTAAAAATTAGCAGAAGTATTTGCGGGGATTCAAAAAGTGACTGTTTTTAGAGCCACAACAATAAAAAAGGATTTTGAAAAAATGGGAATATTATAAATAACCCTTCATGTTTGTTTTATTCTTAAGAAATTAAGAAAAATTAATAAGACAGAGTGTCCATCGGGAATGATAAGAGCTGAGATCACTAGAATTTCATCCTTCTAATCTATCTCAAAGTCTAAATCCTTCTCCTCATCCGTCTTCCAAATATCTAATATTCAGAGCTTTCTTTTCTTTTTTTTCGTATTATTCATTGACGTCTGCCCTTTTGGATTAACGACATCCTCCCATTTTTCTTGTTTTGAACTTTTTTTTAGGAATTCCGAAACTACACCAAAAAAATGAAT</canonical>
            <polymorphic>TATAAAAATCGGCTGGTTTTTTTTCAAATTCGGAAGGAAAATAAAATTTTATGGCCATAATTATTGTTCTGCTTAAATTTTTCCGTTGGAATCTCGATTTTTATCAAATTTCAGACAAATTTTCATGACATCATTATTCAAAAAAATTCAGACAGATATTTCGAGATATTTAATTCAAATTGGTCACATTTCGGTGGGGAACCATCAATTTGTGGATAGGAAAAAACAGATGTTTCGATTTTCATAAATGTTTTGAAAAAATAGGTTCCGGTATGATAAAATTGGGAACAGTTGCTCAGGTTAATTTTTTGTTGGGACTTACAAGGTGGCGCACAGTTACCCGGGTTGGTGAAAACGGATCTATCTTCAGAAATAAGTGTCCTAGAAGCACAAGAACTGTCAGAAATATAGTTTGAGTTCGATTCAAAGTTACTGGATGTTTCAAATCGATTCCTCCAGTCTAGGTATAGCTATGATTGTCCAAAGATGGACGGTGTGAWTTTTGCACGCCATTGTGATTTTTTAAAGATGAAGCAACTTTGACTACAAATAACTCAGATGAAATGTGATCAAATAATTTAAAACTTGGCCAGTTTACTGATGAATTATGGCTCTAAAAATTAGCAGAAGTATTTGCGGGGATTCAAAAAGTGACTGTTTTTAGAGCCACAACAATAAAAAAGGATTTTGAAAAAATGGGAATATTATAAATAACCCTTCATGTTTGTTTTATTCTTAAGAAATTAAGAAAAATTAATAAGACAGAGTGTCCATCGGGAATGATAAGAGCTGAGATCACTAGAATTTCATCCTTCTAATCTATCTCAAAGTCTAAATCCTTCTCCTCATCCGTCTTCCAAATATCTAATATTCAGAGCTTTCTTTTCTTTTTTTTCGTATTATTCATTGACGTCTGCCCTTTTGGATTAACGACATCCTCCCATTTTTCTTGTTTTGAACTTTTTTTTAGGAATTCCGAAACTACACCAAAAAAATGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGTTGCTCAGGTTAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CGCAAATACTTCTGCTAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>351</pcr_amplicon_size>
		<canonical_amplicon>ACAGTTGCTCAGGTTAATTTTTTGTTGGGACTTACAAGGTGGCGCACAGTTACCCGGGTTGGTGAAAACGGATCTATCTTCAGAAATAAGTGTCCTAGAAGCACAAGAACTGTCAGAAATATAGTTTGAGTTCGATTCAAAGTTACTGGATGTTTCAAATCGATTCCTCCAGTCTAGGTATAGCTATGATTGTCCAAAGATGGACGGTGTGATTTTTGCACGCCATTGTGATTTTTTAAAGATGAAGCAACTTTGACTACAAATAACTCAGATGAAATGTGATCAAATAATTTAAAACTTGGCCAGTTTACTGATGAATTATGGCTCTAAAAATTAGCAGAAGTATTTGCG</canonical_amplicon>
		<polymorphic_amplicon>ACAGTTGCTCAGGTTAATTTTTTGTTGGGACTTACAAGGTGGCGCACAGTTACCCGGGTTGGTGAAAACGGATCTATCTTCAGAAATAAGTGTCCTAGAAGCACAAGAACTGTCAGAAATATAGTTTGAGTTCGATTCAAAGTTACTGGATGTTTCAAATCGATTCCTCCAGTCTAGGTATAGCTATGATTGTCCAAAGATGGACGGTGTGAWTTTTGCACGCCATTGTGATTTTTTAAAGATGAAGCAACTTTGACTACAAATAACTCAGATGAAATGTGATCAAATAATTTAAAACTTGGCCAGTTTACTGATGAATTATGGCTCTAAAAATTAGCAGAAGTATTTGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35689</snp_id>
        <super_contig>c010001349.Contig1</super_contig>
        <contig_pos>5205</contig_pos>
        <strand>+</strand>
        <context>AATAAAAAAG[A/G]ATTTTGAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGCGGGGATTCAAAAAGTGACTGTTTTTAGAGCCACAACAATAAAAAAG</left_flank>
        <right_flank>ATTTTGAAAAAATGGGAATATTATAAATAACCCTTCATGTTTGTTTTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACATTTCGGTGGGGAACCATCAATTTGTGGATAGGAAAAAACAGATGTTTCGATTTTCATAAATGTTTTGAAAAAATAGGTTCCGGTATGATAAAATTGGGAACAGTTGCTCAGGTTAATTTTTTGTTGGGACTTACAAGGTGGCGCACAGTTACCCGGGTTGGTGAAAACGGATCTATCTTCAGAAATAAGTGTCCTAGAAGCACAAGAACTGTCAGAAATATAGTTTGAGTTCGATTCAAAGTTACTGGATGTTTCAAATCGATTCCTCCAGTCTAGGTATAGCTATGATTGTCCAAAGATGGACGGTGTGATTTTTGCACGCCATTGTGATTTTTTAAAGATGAAGCAACTTTGACTACAAATAACTCAGATGAAATGTGATCAAATAATTTAAAACTTGGCCAGTTTACTGATGAATTATGGCTCTAAAAATTAGCAGAAGTATTTGCGGGGATTCAAAAAGTGACTGTTTTTAGAGCCACAACAATAAAAAAGGATTTTGAAAAAATGGGAATATTATAAATAACCCTTCATGTTTGTTTTATTCTTAAGAAATTAAGAAAAATTAATAAGACAGAGTGTCCATCGGGAATGATAAGAGCTGAGATCACTAGAATTTCATCCTTCTAATCTATCTCAAAGTCTAAATCCTTCTCCTCATCCGTCTTCCAAATATCTAATATTCAGAGCTTTCTTTTCTTTTTTTTCGTATTATTCATTGACGTCTGCCCTTTTGGATTAACGACATCCTCCCATTTTTCTTGTTTTGAACTTTTTTTTAGGAATTCCGAAACTACACCAAAAAAATGAATAAAAAAAGGGGAGACTGGGAGATCCAAAATTCAACAGAGTCAGCAAAAGCACAAACACAAATAAATATAGAGATGTATTGGTCGAATAAAAAGGCATTCTTCGGTAATCGGATCTCCCCGGGGAGTGCTTTCAGCTGCGAACTTCTAGATCATTTCCGCGGCGACGTTGGGACAAGAAGAAGAA</canonical>
            <polymorphic>CACATTTCGGTGGGGAACCATCAATTTGTGGATAGGAAAAAACAGATGTTTCGATTTTCATAAATGTTTTGAAAAAATAGGTTCCGGTATGATAAAATTGGGAACAGTTGCTCAGGTTAATTTTTTGTTGGGACTTACAAGGTGGCGCACAGTTACCCGGGTTGGTGAAAACGGATCTATCTTCAGAAATAAGTGTCCTAGAAGCACAAGAACTGTCAGAAATATAGTTTGAGTTCGATTCAAAGTTACTGGATGTTTCAAATCGATTCCTCCAGTCTAGGTATAGCTATGATTGTCCAAAGATGGACGGTGTGATTTTTGCACGCCATTGTGATTTTTTAAAGATGAAGCAACTTTGACTACAAATAACTCAGATGAAATGTGATCAAATAATTTAAAACTTGGCCAGTTTACTGATGAATTATGGCTCTAAAAATTAGCAGAAGTATTTGCGGGGATTCAAAAAGTGACTGTTTTTAGAGCCACAACAATAAAAAAGRATTTTGAAAAAATGGGAATATTATAAATAACCCTTCATGTTTGTTTTATTCTTAAGAAATTAAGAAAAATTAATAAGACAGAGTGTCCATCGGGAATGATAAGAGCTGAGATCACTAGAATTTCATCCTTCTAATCTATCTCAAAGTCTAAATCCTTCTCCTCATCCGTCTTCCAAATATCTAATATTCAGAGCTTTCTTTTCTTTTTTTTCGTATTATTCATTGACGTCTGCCCTTTTGGATTAACGACATCCTCCCATTTTTCTTGTTTTGAACTTTTTTTTAGGAATTCCGAAACTACACCAAAAAAATGAATAAAAAAAGGGGAGACTGGGAGATCCAAAATTCAACAGAGTCAGCAAAAGCACAAACACAAATAAATATAGAGATGTATTGGTCGAATAAAAAGGCATTCTTCGGTAATCGGATCTCCCCGGGGAGTGCTTTCAGCTGCGAACTTCTAGATCATTTCCGCGGCGACGTTGGGACAAGAAGAAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCTCTAAAAATTAGCAGAAGTA</pcr_primer_p1>
		<pcr_primer_p2>GATGAGGAGAAGGATTTAGACTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GGCTCTAAAAATTAGCAGAAGTATTTGCGGGGATTCAAAAAGTGACTGTTTTTAGAGCCACAACAATAAAAAAGGATTTTGAAAAAATGGGAATATTATAAATAACCCTTCATGTTTGTTTTATTCTTAAGAAATTAAGAAAAATTAATAAGACAGAGTGTCCATCGGGAATGATAAGAGCTGAGATCACTAGAATTTCATCCTTCTAATCTATCTCAAAGTCTAAATCCTTCTCCTCATC</canonical_amplicon>
		<polymorphic_amplicon>GGCTCTAAAAATTAGCAGAAGTATTTGCGGGGATTCAAAAAGTGACTGTTTTTAGAGCCACAACAATAAAAAAGRATTTTGAAAAAATGGGAATATTATAAATAACCCTTCATGTTTGTTTTATTCTTAAGAAATTAAGAAAAATTAATAAGACAGAGTGTCCATCGGGAATGATAAGAGCTGAGATCACTAGAATTTCATCCTTCTAATCTATCTCAAAGTCTAAATCCTTCTCCTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35690</snp_id>
        <super_contig>c010001350.Contig1</super_contig>
        <contig_pos>3972</contig_pos>
        <strand></strand>
        <context>GACTTTTTTT[A/T]AAATTTTTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTCATTTTCCTTTGATGAACCGCTCCGAAACTGAAGTTTGACTTTTTTT</left_flank>
        <right_flank>AAATTTTTGTAAGATATTCTTAATTGATACTTAAGTTCGATTGTATTTTT</right_flank>
        <qual_score>35</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTACATTTTCGGGTAGGGACTGGTCAGATCAGCGGCGTTGACAAGTTCGACACATGCGCTTTTGGCTTCACCGAGTTGACCGCATCCATATTTCAGAAGCTCCTGGGCGTGTGACCAGGCTTGTGGAACCTGGATCAATCCAGAGCAGAACATGCAAATACCACCAGCTTGAGAGGCAACTTGGGTAATCTGGAAATAAATCTGATAGACTCCTTTGATCTATTAAAGATGGTCTCTGATATACAGTAACTCACCACCAGAGCAGCGAGAAGAAGGACAACAGTCAAGAACTTCATTGTTGAAAAAAGAAGACGATTCACAAATATGTGATGATAGTGAAGAAACTATCCTGGTGGCCTGACTTTTATACGAAGGAGACACCTGGGAACGAGAACTCGGTTCCCGGTTTTGAAATTCGCCGACTCTGGGAATTCTCAAGAATTTGTCTAGTCATTTTCCTTTGATGAACCGCTCCGAAACTGAAGTTTGACTTTTTTTAAAATTTTTGTAAGATATTCTTAATTGATACTTAAGTTCGATTGTATTTTTCTTCATCTCCATACCATCAAACTGTCTATTTTTCTCCACTTTTGAAATGTTTCAACAAAAATATTCATTATTTCAATATTTCTTCACAAGACTATCAAATTACGGTGTTACAGTATCCTTTGGGCAGTACTTTTTACAAACGAGGTTCTTCAAATTAATGATATGTGGATACATATTGGGATAAGAATCAGTCAAATTTGCATTATCCACAATTCCATTACAAGCTTCCTCGGCAAACTTAAGTCTTGAACAGCCGACTTTCAAAAGTTGTGAAGCACCACCCCAAGTCTCAGGAAAGTTAAAATATTCGGAGCATATTATACAATATGTGTTCTGGGAGGTGGTTGTCTGTAAAGAGAATGCTTTAATAAAAACTACTGTACTTGGACTTGCCAGGAAAATACAGAAAAATAGAAAAAGAAATGTTGCCGAGATGAGTTTCATATTCCG</canonical>
            <polymorphic>GGTACATTTTCGGGTAGGGACTGGTCAGATCAGCGGCGTTGACAAGTTCGACACATGCGCTTTTGGCTTCACCGAGTTGACCGCATCCATATTTCAGAAGCTCCTGGGCGTGTGACCAGGCTTGTGGAACCTGGATCAATCCAGAGCAGAACATGCAAATACCACCAGCTTGAGAGGCAACTTGGGTAATCTGGAAATAAATCTGATAGACTCCTTTGATCTATTAAAGATGGTCTCTGATATACAGTAACTCACCACCAGAGCAGCGAGAAGAAGGACAACAGTCAAGAACTTCATTGTTGAAAAAAGAAGACGATTCACAAATATGTGATGATAGTGAAGAAACTATCCTGGTGGCCTGACTTTTATACGAAGGAGACACCTGGGAACGAGAACTCGGTTCCCGGTTTTGAAATTCGCCGACTCTGGGAATTCTCAAGAATTTGTCTAGTCATTTTCCTTTGATGAACCGCTCCGAAACTGAAGTTTGACTTTTTTTWAAATTTTTGTAAGATATTCTTAATTGATACTTAAGTTCGATTGTATTTTTCTTCATCTCCATACCATCAAACTGTCTATTTTTCTCCACTTTTGAAATGTTTCAACAAAAATATTCATTATTTCAATATTTCTTCACAAGACTATCAAATTACGGTGTTACAGTATCCTTTGGGCAGTACTTTTTACAAACGAGGTTCTTCAAATTAATGATATGTGGATACATATTGGGATAAGAATCAGTCAAATTTGCATTATCCACAATTCCATTACAAGCTTCCTCGGCAAACTTAAGTCTTGAACAGCCGACTTTCAAAAGTTGTGAAGCACCACCCCAAGTCTCAGGAAAGTTAAAATATTCGGAGCATATTATACAATATGTGTTCTGGGAGGTGGTTGTCTGTAAAGAGAATGCTTTAATAAAAACTACTGTACTTGGACTTGCCAGGAAAATACAGAAAAATAGAAAAAGAAATGTTGCCGAGATGAGTTTCATATTCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>274 224 174 85 84 66 60 22 11</canonical_bands>
                <polymorphic_bands>296 224 174 85 84 66 60 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCTAGTCATTTTCCTTTGATGA</pcr_primer_p1>
		<pcr_primer_p2>CCTCGTTTGTAAAAAGTACTGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCTAGTCATTTTCCTTTGATGAACCGCTCCGAAACTGAAGTTTGACTTTTTTTAAAATTTTTGTAAGATATTCTTAATTGATACTTAAGTTCGATTGTATTTTTCTTCATCTCCATACCATCAAACTGTCTATTTTTCTCCACTTTTGAAATGTTTCAACAAAAATATTCATTATTTCAATATTTCTTCACAAGACTATCAAATTACGGTGTTACAGTATCCTTTGGGCAGTACTTTTTACAAACGAGG</canonical_amplicon>
		<polymorphic_amplicon>GTCTAGTCATTTTCCTTTGATGAACCGCTCCGAAACTGAAGTTTGACTTTTTTTWAAATTTTTGTAAGATATTCTTAATTGATACTTAAGTTCGATTGTATTTTTCTTCATCTCCATACCATCAAACTGTCTATTTTTCTCCACTTTTGAAATGTTTCAACAAAAATATTCATTATTTCAATATTTCTTCACAAGACTATCAAATTACGGTGTTACAGTATCCTTTGGGCAGTACTTTTTACAAACGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35691</snp_id>
        <super_contig>c010001350.Contig1</super_contig>
        <contig_pos>4471</contig_pos>
        <strand>+</strand>
        <context>TTTCATATTC[C/T]GGTTCGAGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATACAGAAAAATAGAAAAAGAAATGTTGCCGAGATGAGTTTCATATTC</left_flank>
        <right_flank>GGTTCGAGTTGAACAAAATTAGTTTTTTCTCTCTTTTTAACTGTGAAAAT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATTTTTGTAAGATATTCTTAATTGATACTTAAGTTCGATTGTATTTTTCTTCATCTCCATACCATCAAACTGTCTATTTTTCTCCACTTTTGAAATGTTTCAACAAAAATATTCATTATTTCAATATTTCTTCACAAGACTATCAAATTACGGTGTTACAGTATCCTTTGGGCAGTACTTTTTACAAACGAGGTTCTTCAAATTAATGATATGTGGATACATATTGGGATAAGAATCAGTCAAATTTGCATTATCCACAATTCCATTACAAGCTTCCTCGGCAAACTTAAGTCTTGAACAGCCGACTTTCAAAAGTTGTGAAGCACCACCCCAAGTCTCAGGAAAGTTAAAATATTCGGAGCATATTATACAATATGTGTTCTGGGAGGTGGTTGTCTGTAAAGAGAATGCTTTAATAAAAACTACTGTACTTGGACTTGCCAGGAAAATACAGAAAAATAGAAAAAGAAATGTTGCCGAGATGAGTTTCATATTCCGGTTCGAGTTGAACAAAATTAGTTTTTTCTCTCTTTTTAACTGTGAAAATAAGAATAGGACAACAAATGGAATTCGAGTTACAATAGAATCTTGTCACAAGAAAAATTAGTCATTTCTTATGGCTTTAAAGTATACTGAAAGTATGGTGGTGTTTGGTTTCAGTTTGAAGACCTATTATTACTATTAAAGAATTTTATTTCAGTTTAACATTTTCTTGCAATAGTTTCTACATAAATTAGTTCTGCAGTCAACTATATGAGGATACATATTGGCGTAAGAAGTCGTCAGATCTGTGCTCTTCAAAAGTTCTCCGCATTCATTGCATCCAAGTTTCGTACATACAACGTTCAGAATTTCAGCAGCATTATCCCAAGTTTTGGGAACTGCCAGAAAGCTGGAACAGAGAACACATGGGTCCAAAGAATAGGTTGTCTGAAATAGAACATGTTTTAAAAATGAATTAAAGTTTTAAGGTATACCTTCAAAAAACAAATGGTTA</canonical>
            <polymorphic>AAAATTTTTGTAAGATATTCTTAATTGATACTTAAGTTCGATTGTATTTTTCTTCATCTCCATACCATCAAACTGTCTATTTTTCTCCACTTTTGAAATGTTTCAACAAAAATATTCATTATTTCAATATTTCTTCACAAGACTATCAAATTACGGTGTTACAGTATCCTTTGGGCAGTACTTTTTACAAACGAGGTTCTTCAAATTAATGATATGTGGATACATATTGGGATAAGAATCAGTCAAATTTGCATTATCCACAATTCCATTACAAGCTTCCTCGGCAAACTTAAGTCTTGAACAGCCGACTTTCAAAAGTTGTGAAGCACCACCCCAAGTCTCAGGAAAGTTAAAATATTCGGAGCATATTATACAATATGTGTTCTGGGAGGTGGTTGTCTGTAAAGAGAATGCTTTAATAAAAACTACTGTACTTGGACTTGCCAGGAAAATACAGAAAAATAGAAAAAGAAATGTTGCCGAGATGAGTTTCATATTCYGGTTCGAGTTGAACAAAATTAGTTTTTTCTCTCTTTTTAACTGTGAAAATAAGAATAGGACAACAAATGGAATTCGAGTTACAATAGAATCTTGTCACAAGAAAAATTAGTCATTTCTTATGGCTTTAAAGTATACTGAAAGTATGGTGGTGTTTGGTTTCAGTTTGAAGACCTATTATTACTATTAAAGAATTTTATTTCAGTTTAACATTTTCTTGCAATAGTTTCTACATAAATTAGTTCTGCAGTCAACTATATGAGGATACATATTGGCGTAAGAAGTCGTCAGATCTGTGCTCTTCAAAAGTTCTCCGCATTCATTGCATCCAAGTTTCGTACATACAACGTTCAGAATTTCAGCAGCATTATCCCAAGTTTTGGGAACTGCCAGAAAGCTGGAACAGAGAACACATGGGTCCAAAGAATAGGTTGTCTGAAATAGAACATGTTTTAAAAATGAATTAAAGTTTTAAGGTATACCTTCAAAAAACAAATGGTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAGTCTCAGGAAAGTTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AATTCCATTTGTTGTCCTATTCT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CCAAGTCTCAGGAAAGTTAAAATATTCGGAGCATATTATACAATATGTGTTCTGGGAGGTGGTTGTCTGTAAAGAGAATGCTTTAATAAAAACTACTGTACTTGGACTTGCCAGGAAAATACAGAAAAATAGAAAAAGAAATGTTGCCGAGATGAGTTTCATATTCCGGTTCGAGTTGAACAAAATTAGTTTTTTCTCTCTTTTTAACTGTGAAAATAAGAATAGGACAACAAATGGAATT</canonical_amplicon>
		<polymorphic_amplicon>CCAAGTCTCAGGAAAGTTAAAATATTCGGAGCATATTATACAATATGTGTTCTGGGAGGTGGTTGTCTGTAAAGAGAATGCTTTAATAAAAACTACTGTACTTGGACTTGCCAGGAAAATACAGAAAAATAGAAAAAGAAATGTTGCCGAGATGAGTTTCATATTCYGGTTCGAGTTGAACAAAATTAGTTTTTTCTCTCTTTTTAACTGTGAAAATAAGAATAGGACAACAAATGGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35692</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>5137</contig_pos>
        <strand></strand>
        <context>CTTTTCAAGg[G/A]cgtataactc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGG</left_flank>
        <right_flank>CGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCTCGGACCACGTAGAGTCCCCACCAACCGCCGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGT</canonical>
            <polymorphic>AAACGATTGATGTTGGGAAAACGAAGCAAACGAGCCGCGCCAGGACTCCATTGTCAGCCAGTTGGTCTCCTCGGTCAACAATCCCCACCAACGCTCATCTCTCAACCAGTCAAGACCATTGTCAAGTCTCGAGCCAAAGCAGCTGGCACCAAAACCGCGCCAGTATCAGTCACCAAAAAGCTGATTGAACAATCCTCGGACCACGTAGAGTCCCCACCAACCGCCGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGRCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGTACTTATCTTCAACCACAA</pcr_primer_p1>
		<pcr_primer_p2>TTTATAACTACTCCCCGTCCA</pcr_primer_p2>
		<pcr_amplicon_size>654</pcr_amplicon_size>
		<canonical_amplicon>CATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATT</canonical_amplicon>
		<polymorphic_amplicon>CATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGRCGTATAACTCGGTTCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35693</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>5361</contig_pos>
        <strand></strand>
        <context>tgttttcgat[C/A]aaactaaaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGAT</left_flank>
        <right_flank>AAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAATAACTAACTAGTTTAGCAAGTTTCGATTTTTCGTCTAGATTATTTGGCTCATAACTACCTTCAAACTTAATATTTTTGATCAAACTAAAAATTAAAATGTAGATATTGACAAGAGCTGCAAAATGACATATAATTCAACTATATTCATGACATGGCTTCGCGAATCAGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGT</canonical>
            <polymorphic>CGGTCGTTTGTACGACTTCCGTAGAGCTCACGTCAGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATMAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAATAACTAACTAGTTTAGCAAGTTTCGATTTTTCGTCTAGATTATTTGGCTCATAACTACCTTCAAACTTAATATTTTTGATCAAACTAAAAATTAAAATGTAGATATTGACAAGAGCTGCAAAATGACATATAATTCAACTATATTCATGACATGGCTTCGCGAATCAGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>363 155 141 110 91 68 25 20 16 11</canonical_bands>
                <polymorphic_bands>518 141 110 91 68 25 20 16 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGTACTTATCTTCAACCACAA</pcr_primer_p1>
		<pcr_primer_p2>TTTATAACTACTCCCCGTCCA</pcr_primer_p2>
		<pcr_amplicon_size>654</pcr_amplicon_size>
		<canonical_amplicon>CATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAA</canonical_amplicon>
		<polymorphic_amplicon>CATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATMAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35694</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>5395</contig_pos>
        <strand></strand>
        <context>ctaaatgaga[G/A]ctacaaaatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGA</left_flank>
        <right_flank>CTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAAT</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAATAACTAACTAGTTTAGCAAGTTTCGATTTTTCGTCTAGATTATTTGGCTCATAACTACCTTCAAACTTAATATTTTTGATCAAACTAAAAATTAAAATGTAGATATTGACAAGAGCTGCAAAATGACATATAATTCAACTATATTCATGACATGGCTTCGCGAATCAGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAA</canonical>
            <polymorphic>AGAGTTAAGCGTAATTTGGGAGGCGAGGGAGGGTGTCAGTTGTGTCTGAATGGAACTCCGTTGAAGAGAACGAAGAGATCCTTTGATTGTGTGCCATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGARCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAATAACTAACTAGTTTAGCAAGTTTCGATTTTTCGTCTAGATTATTTGGCTCATAACTACCTTCAAACTTAATATTTTTGATCAAACTAAAAATTAAAATGTAGATATTGACAAGAGCTGCAAAATGACATATAATTCAACTATATTCATGACATGGCTTCGCGAATCAGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>289 211 183 180 76 61</canonical_bands>
                <polymorphic_bands>472 211 180 76 61</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>289 211 183 112 68 45 40 36 16</canonical_bands>
                <polymorphic_bands>472 211 112 68 45 40 36 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGTACTTATCTTCAACCACAA</pcr_primer_p1>
		<pcr_primer_p2>TTTATAACTACTCCCCGTCCA</pcr_primer_p2>
		<pcr_amplicon_size>654</pcr_amplicon_size>
		<canonical_amplicon>CATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGAGCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAA</canonical_amplicon>
		<polymorphic_amplicon>CATGTACTTATCTTCAACCACAATACTCGGATTGGAATCCATTCCTTGGTGATCAACGACCAAGAGGATCGCAGTCACCAGTGGGAACACCGATCGCTGGGCATAGAACCAAGAGAGCTGGAGTGAGTTGGTCTACTCTTTTCAAGGGCGTATAACTCGGTTCGAATTCGGAATTCCGTATTGATCTAAAAACTAAAATGTAGATCCTGACGAGATCTACAAATTAATATACACATTAACCACTTTTTCCGAAATACTTCTCGACTGGGAGTCGTAAAACGAGACATAGGTCAGAAGCATCGATAAGTTAGTCCCACTTTAGCATCCAGGTTAATAGACTCCTAACTTCCTTCAAACTTGATGTTTTCGATCAAACTAAAAAGTGAAATGTAGAACTAAATGAGARCTACAAAATTATATAAAATTTGCTGAATACCGTATCAGTACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35695</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>5934</contig_pos>
        <strand>+</strand>
        <context>YTTTAAAACA[A/C]TCATATATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTACTCCTTTAAAACA</left_flank>
        <right_flank>TCATATATTCCAGTGCTTGCCACATCCCCAATGCACGGTCCATGTCCGTC</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAATAACTAACTAGTTTAGCAAGTTTCGATTTTTCGTCTAGATTATTTGGCTCATAACTACCTTCAAACTTAATATTTTTGATCAAACTAAAAATTAAAATGTAGATATTGACAAGAGCTGCAAAATGACATATAATTCAACTATATTCATGACATGGCTTCGCGAATCAGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTACTCCTTTAAAACAATCATATATTCCAGTGCTTGCCACATCCCCAATGCACGGTCCATGTCCGTCGCTACAAACGTAACCTAATCGGATCGCAATACTGTGAGCCTTGCAACGGTCACTACGGACGTAAGAAGAGAGAAGCCGAGAGAGATCAATGCTTGAGACGAGAGAAACGATACGCAGATGAGCAGTGTGATAATGATGAGTTCAGTATTAATGAGAGGAGCAAACGACAGGCATATAATCCGAAAGGAATCTTGGATATTGTGAAGCTGTTGTCAAAGGCGTCGTCGGGAGGTGAGTCTTGATTTTTGGGACTTTTTAAAGGCATCCTAAAATCGTAATTCTTCATTTTTGATAAGTTGATAAGAAGTCGCATAGCTCAGCGGATCTCCATGACTACTGCACATAATATCTCCCAATTTTCCAGGCAATAACCCAGGAGGCTGCATGAAATTCCCGGCATGTGTGTTAGCGCAAAAGAAGCGCAGAAAGCGTAACGCTGATCGACTAGAG</canonical>
            <polymorphic>ACTTTTTGAATGGGAGTCGTTAAACGAGGCATAGGGTAGCAGTGCGTTACTTTCGCTTGCTCTCTAGATTAATCAGTTTGTAACTTTCTTCAAACTTGACATTTTTTAACAAACAAAAAACTGAAATATAGAACTAGTAACGAGCTACCAAACAATATATAATTTGATTAGTTTAACTCAAACGCTGTTGGACGGGGAGTAGTTATAAATAACTAACTAGTTTAGCAAGTTTCGATTTTTCGTCTAGATTATTTGGCTCATAACTACCTTCAAACTTAATATTTTTGATCAAACTAAAAATTAAAATGTAGATATTGACAAGAGCTGCAAAATGACATATAATTCAACTATATTCATGACATGGCTTCGCGAATCAGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTACTCCTTTAAAACAMTCATATATTCCAGTGCTTGCCACATCCCCAATGCACGGTCCATGTCCGTCGCTACAAACGTAACCTAATCGGATCGCAATACTGTGAGCCTTGCAACGGTCACTACGGACGTAAGAAGAGAGAAGCCGAGAGAGATCAATGCTTGAGACGAGAGAAACGATACGCAGATGAGCAGTGTGATAATGATGAGTTCAGTATTAATGAGAGGAGCAAACGACAGGCATATAATCCGAAAGGAATCTTGGATATTGTGAAGCTGTTGTCAAAGGCGTCGTCGGGAGGTGAGTCTTGATTTTTGGGACTTTTTAAAGGCATCCTAAAATCGTAATTCTTCATTTTTGATAAGTTGATAAGAAGTCGCATAGCTCAGCGGATCTCCATGACTACTGCACATAATATCTCCCAATTTTCCAGGCAATAACCCAGGAGGCTGCATGAAATTCCCGGCATGTGTGTTAGCGCAAAAGAAGCGCAGAAAGCGTAACGCTGATCGACTAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGTCTTTGAAGGGACTACTTC</pcr_primer_p1>
		<pcr_primer_p2>TCTCTCTTCTTACGTCCGTAGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTACTCCTTTAAAACAATCATATATTCCAGTGCTTGCCACATCCCCAATGCACGGTCCATGTCCGTCGCTACAAACGTAACCTAATCGGATCGCAATACTGTGAGCCTTGCAACGGTCACTACGGACGTAAGAAGAGAGA</canonical_amplicon>
		<polymorphic_amplicon>AGAGTCTTTGAAGGGACTACTTCAGCTCGGATGTTTCTAGGCTTCTGGTGGTTTTTGCAAGATGTAAATTTAATTTTTTGACTTAAACCCCAACCACTAACTCAAGTGTTACTCCTTTAAAACAMTCATATATTCCAGTGCTTGCCACATCCCCAATGCACGGTCCATGTCCGTCGCTACAAACGTAACCTAATCGGATCGCAATACTGTGAGCCTTGCAACGGTCACTACGGACGTAAGAAGAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35696</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>23326</contig_pos>
        <strand>+</strand>
        <context>AAACATGGGT[G/T]ACTAGAAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGCACACCGAGCATAAAGGGGGGCGAGTGGGGGGAAAATAAACATGGGT</left_flank>
        <right_flank>ACTAGAAAAGGTTGTCAAAAAAAAATAGAAAAGGTTGTCAAAAATCTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGCCTCCTTTAATTTGGTTTCAAATTTTCAATTTAAAAAAAAATGGTTTTGGCATCAGAATTATGTTTAAAATTCATGAAAAACAGTTTTTTTTTTTGTTGAGAAAAATACTAATAGAAAAGCTATGAATTTCAAAAAAAGGGATAAATGAACAAATGGGGGAAAAAAAGATCTATTTGCAGAAAAAAAGACAAATGGGGAATTTTATAGGCAAACAGAACAAAAGGATATTCGTGAGAAAATAGTCAAAATACGGAAAATTAGGAGTTTTGTGTCCAAAAATAACTAATAACTTTTAGATTTTTCAAAATTGCCAAAAAACGATTTTTCCATTTTTTTTTCCTTCCAAAAATTGTCATTTCCGGCAATTTTATAACCATTCTCTCACCGAAAAAGAACTTTTCCTTATCAGCAACCTATTATTATCACAAAGAGAAGTAATTATCATATGCACACCGAGCATAAAGGGGGGCGAGTGGGGGGAAAATAAACATGGGTGACTAGAAAAGGTTGTCAAAAAAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAGAAAGCGCGCGCACCTCTTACCTTTAAAGGCGCATATCTCATAAACAAGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATTAAGCATATTTTTTTGGTTTATAAAAGTTGTCTAGCTTTAAAACCGAGGAAGTTAGACGCAGAGAAACGAGACCGCCTCACTTCACTGCGTCCTCCCGCCCAAGGAAACTTTAAAGGCACATATCTCAAAAACCAAAAAAGCTAGCAAAATGTTGTCAATTGTAAAAATAATTGTCTTTATTTTACACTATTTTTCAACTTACAAAATTAATCTA</canonical>
            <polymorphic>TCGCCTCCTTTAATTTGGTTTCAAATTTTCAATTTAAAAAAAAATGGTTTTGGCATCAGAATTATGTTTAAAATTCATGAAAAACAGTTTTTTTTTTTGTTGAGAAAAATACTAATAGAAAAGCTATGAATTTCAAAAAAAGGGATAAATGAACAAATGGGGGAAAAAAAGATCTATTTGCAGAAAAAAAGACAAATGGGGAATTTTATAGGCAAACAGAACAAAAGGATATTCGTGAGAAAATAGTCAAAATACGGAAAATTAGGAGTTTTGTGTCCAAAAATAACTAATAACTTTTAGATTTTTCAAAATTGCCAAAAAACGATTTTTCCATTTTTTTTTCCTTCCAAAAATTGTCATTTCCGGCAATTTTATAACCATTCTCTCACCGAAAAAGAACTTTTCCTTATCAGCAACCTATTATTATCACAAAGAGAAGTAATTATCATATGCACACCGAGCATAAAGGGGGGCGAGTGGGGGGAAAATAAACATGGGTKACTAGAAAAGGTTGTCAAAAAAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAGAAAGCGCGCGCACCTCTTACCTTTAAAGGCGCATATCTCATAAACAAGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATTAAGCATATTTTTTTGGTTTATAAAAGTTGTCTAGCTTTAAAACCGAGGAAGTTAGACGCAGAGAAACGAGACCGCCTCACTTCACTGCGTCCTCCCGCCCAAGGAAACTTTAAAGGCACATATCTCAAAAACCAAAAAAGCTAGCAAAATGTTGTCAATTGTAAAAATAATTGTCTTTATTTTACACTATTTTTCAACTTACAAAATTAATCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>237 163 113 110 68 68 41 38 34 28 25 24 23 21 5 2</canonical_bands>
                <polymorphic_bands>237 163 131 113 68 68 41 38 34 28 25 24 23 5 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAGTAATTATCATATGCACACC</pcr_primer_p1>
		<pcr_primer_p2>AACTACCGTATCTTGCTTAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>964</pcr_amplicon_size>
		<canonical_amplicon>AGAAGTAATTATCATATGCACACCGAGCATAAAGGGGGGCGAGTGGGGGGAAAATAAACATGGGTGACTAGAAAAGGTTGTCAAAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AGAAGTAATTATCATATGCACACCGAGCATAAAGGGGGGCGAGTGGGGGGAAAATAAACATGGGTKACTAGAAAAGGTTGTCAAAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35697</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>23405</contig_pos>
        <strand></strand>
        <context>gaaagttttt[A/T]actagggaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTT</left_flank>
        <right_flank>ACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAACAGTTTTTTTTTTTGTTGAGAAAAATACTAATAGAAAAGCTATGAATTTCAAAAAAAGGGATAAATGAACAAATGGGGGAAAAAAAGATCTATTTGCAGAAAAAAAGACAAATGGGGAATTTTATAGGCAAACAGAACAAAAGGATATTCGTGAGAAAATAGTCAAAATACGGAAAATTAGGAGTTTTGTGTCCAAAAATAACTAATAACTTTTAGATTTTTCAAAATTGCCAAAAAACGATTTTTCCATTTTTTTTTCCTTCCAAAAATTGTCATTTCCGGCAATTTTATAACCATTCTCTCACCGAAAAAGAACTTTTCCTTATCAGCAACCTATTATTATCACAAAGAGAAGTAATTATCATATGCACACCGAGCATAAAGGGGGGCGAGTGGGGGGAAAATAAACATGGGTGACTAGAAAAGGTTGTCAAAAAAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAGAAAGCGCGCGCACCTCTTACCTTTAAAGGCGCATATCTCATAAACAAGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATTAAGCATATTTTTTTGGTTTATAAAAGTTGTCTAGCTTTAAAACCGAGGAAGTTAGACGCAGAGAAACGAGACCGCCTCACTTCACTGCGTCCTCCCGCCCAAGGAAACTTTAAAGGCACATATCTCAAAAACCAAAAAAGCTAGCAAAATGTTGTCAATTGTAAAAATAATTGTCTTTATTTTACACTATTTTTCAACTTACAAAATTAATCTAGCTTAAAAACTGAAGAAGTTAGACGCAGAGAAACGAGAGGGTAGGGCTTCTCTGCGTCCTCCCGCCCGATGAGATTTTA</canonical>
            <polymorphic>AAAAACAGTTTTTTTTTTTGTTGAGAAAAATACTAATAGAAAAGCTATGAATTTCAAAAAAAGGGATAAATGAACAAATGGGGGAAAAAAAGATCTATTTGCAGAAAAAAAGACAAATGGGGAATTTTATAGGCAAACAGAACAAAAGGATATTCGTGAGAAAATAGTCAAAATACGGAAAATTAGGAGTTTTGTGTCCAAAAATAACTAATAACTTTTAGATTTTTCAAAATTGCCAAAAAACGATTTTTCCATTTTTTTTTCCTTCCAAAAATTGTCATTTCCGGCAATTTTATAACCATTCTCTCACCGAAAAAGAACTTTTCCTTATCAGCAACCTATTATTATCACAAAGAGAAGTAATTATCATATGCACACCGAGCATAAAGGGGGGCGAGTGGGGGGAAAATAAACATGGGTGACTAGAAAAGGTTGTCAAAAAAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTWACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAGAAAGCGCGCGCACCTCTTACCTTTAAAGGCGCATATCTCATAAACAAGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATTAAGCATATTTTTTTGGTTTATAAAAGTTGTCTAGCTTTAAAACCGAGGAAGTTAGACGCAGAGAAACGAGACCGCCTCACTTCACTGCGTCCTCCCGCCCAAGGAAACTTTAAAGGCACATATCTCAAAAACCAAAAAAGCTAGCAAAATGTTGTCAATTGTAAAAATAATTGTCTTTATTTTACACTATTTTTCAACTTACAAAATTAATCTAGCTTAAAAACTGAAGAAGTTAGACGCAGAGAAACGAGAGGGTAGGGCTTCTCTGCGTCCTCCCGCCCGATGAGATTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>498 97 95 76 73 72 41 38 10</canonical_bands>
                <polymorphic_bands>539 97 95 76 73 72 38 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATAGAAAAGGTTGTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAACTACCGTATCTTGCTTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>879</pcr_amplicon_size>
		<canonical_amplicon>AAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGA</canonical_amplicon>
		<polymorphic_amplicon>AAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTWACTAGGGAAATATTTTTTGTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35698</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>23443</contig_pos>
        <strand></strand>
        <context>tacacatttt[T/G]ttaatttgca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTT</left_flank>
        <right_flank>TTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAATGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAGCTATGAATTTCAAAAAAAGGGATAAATGAACAAATGGGGGAAAAAAAGATCTATTTGCAGAAAAAAAGACAAATGGGGAATTTTATAGGCAAACAGAACAAAAGGATATTCGTGAGAAAATAGTCAAAATACGGAAAATTAGGAGTTTTGTGTCCAAAAATAACTAATAACTTTTAGATTTTTCAAAATTGCCAAAAAACGATTTTTCCATTTTTTTTTCCTTCCAAAAATTGTCATTTCCGGCAATTTTATAACCATTCTCTCACCGAAAAAGAACTTTTCCTTATCAGCAACCTATTATTATCACAAAGAGAAGTAATTATCATATGCACACCGAGCATAAAGGGGGGCGAGTGGGGGGAAAATAAACATGGGTGACTAGAAAAGGTTGTCAAAAAAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAGAAAGCGCGCGCACCTCTTACCTTTAAAGGCGCATATCTCATAAACAAGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATTAAGCATATTTTTTTGGTTTATAAAAGTTGTCTAGCTTTAAAACCGAGGAAGTTAGACGCAGAGAAACGAGACCGCCTCACTTCACTGCGTCCTCCCGCCCAAGGAAACTTTAAAGGCACATATCTCAAAAACCAAAAAAGCTAGCAAAATGTTGTCAATTGTAAAAATAATTGTCTTTATTTTACACTATTTTTCAACTTACAAAATTAATCTAGCTTAAAAACTGAAGAAGTTAGACGCAGAGAAACGAGAGGGTAGGGCTTCTCTGCGTCCTCCCGCCCGATGAGATTTTAAAGGCGCATATCTCGAAAACCAAAATAGTTAGCCAAAA</canonical>
            <polymorphic>GAAAAGCTATGAATTTCAAAAAAAGGGATAAATGAACAAATGGGGGAAAAAAAGATCTATTTGCAGAAAAAAAGACAAATGGGGAATTTTATAGGCAAACAGAACAAAAGGATATTCGTGAGAAAATAGTCAAAATACGGAAAATTAGGAGTTTTGTGTCCAAAAATAACTAATAACTTTTAGATTTTTCAAAATTGCCAAAAAACGATTTTTCCATTTTTTTTTCCTTCCAAAAATTGTCATTTCCGGCAATTTTATAACCATTCTCTCACCGAAAAAGAACTTTTCCTTATCAGCAACCTATTATTATCACAAAGAGAAGTAATTATCATATGCACACCGAGCATAAAGGGGGGCGAGTGGGGGGAAAATAAACATGGGTGACTAGAAAAGGTTGTCAAAAAAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTKTTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAGAAAGCGCGCGCACCTCTTACCTTTAAAGGCGCATATCTCATAAACAAGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATTAAGCATATTTTTTTGGTTTATAAAAGTTGTCTAGCTTTAAAACCGAGGAAGTTAGACGCAGAGAAACGAGACCGCCTCACTTCACTGCGTCCTCCCGCCCAAGGAAACTTTAAAGGCACATATCTCAAAAACCAAAAAAGCTAGCAAAATGTTGTCAATTGTAAAAATAATTGTCTTTATTTTACACTATTTTTCAACTTACAAAATTAATCTAGCTTAAAAACTGAAGAAGTTAGACGCAGAGAAACGAGAGGGTAGGGCTTCTCTGCGTCCTCCCGCCCGATGAGATTTTAAAGGCGCATATCTCGAAAACCAAAATAGTTAGCCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATAGAAAAGGTTGTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAACTACCGTATCTTGCTTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>879</pcr_amplicon_size>
		<canonical_amplicon>AAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATA</canonical_amplicon>
		<polymorphic_amplicon>AAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTKTTAATTTGCAGCTTTTTGATATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35699</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>23466</contig_pos>
        <strand></strand>
        <context>tttttgatat[A/C]ttttttggtt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATAT</left_flank>
        <right_flank>TTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGGATAAATGAACAAATGGGGGAAAAAAAGATCTATTTGCAGAAAAAAAGACAAATGGGGAATTTTATAGGCAAACAGAACAAAAGGATATTCGTGAGAAAATAGTCAAAATACGGAAAATTAGGAGTTTTGTGTCCAAAAATAACTAATAACTTTTAGATTTTTCAAAATTGCCAAAAAACGATTTTTCCATTTTTTTTTCCTTCCAAAAATTGTCATTTCCGGCAATTTTATAACCATTCTCTCACCGAAAAAGAACTTTTCCTTATCAGCAACCTATTATTATCACAAAGAGAAGTAATTATCATATGCACACCGAGCATAAAGGGGGGCGAGTGGGGGGAAAATAAACATGGGTGACTAGAAAAGGTTGTCAAAAAAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAGAAAGCGCGCGCACCTCTTACCTTTAAAGGCGCATATCTCATAAACAAGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATTAAGCATATTTTTTTGGTTTATAAAAGTTGTCTAGCTTTAAAACCGAGGAAGTTAGACGCAGAGAAACGAGACCGCCTCACTTCACTGCGTCCTCCCGCCCAAGGAAACTTTAAAGGCACATATCTCAAAAACCAAAAAAGCTAGCAAAATGTTGTCAATTGTAAAAATAATTGTCTTTATTTTACACTATTTTTCAACTTACAAAATTAATCTAGCTTAAAAACTGAAGAAGTTAGACGCAGAGAAACGAGAGGGTAGGGCTTCTCTGCGTCCTCCCGCCCGATGAGATTTTAAAGGCGCATATCTCGAAAACCAAAATAGTTAGCCAAAAGTTGTTAACCACAACATTGTTTT</canonical>
            <polymorphic>AGGGATAAATGAACAAATGGGGGAAAAAAAGATCTATTTGCAGAAAAAAAGACAAATGGGGAATTTTATAGGCAAACAGAACAAAAGGATATTCGTGAGAAAATAGTCAAAATACGGAAAATTAGGAGTTTTGTGTCCAAAAATAACTAATAACTTTTAGATTTTTCAAAATTGCCAAAAAACGATTTTTCCATTTTTTTTTCCTTCCAAAAATTGTCATTTCCGGCAATTTTATAACCATTCTCTCACCGAAAAAGAACTTTTCCTTATCAGCAACCTATTATTATCACAAAGAGAAGTAATTATCATATGCACACCGAGCATAAAGGGGGGCGAGTGGGGGGAAAATAAACATGGGTGACTAGAAAAGGTTGTCAAAAAAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATMTTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAGAAAGCGCGCGCACCTCTTACCTTTAAAGGCGCATATCTCATAAACAAGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATTAAGCATATTTTTTTGGTTTATAAAAGTTGTCTAGCTTTAAAACCGAGGAAGTTAGACGCAGAGAAACGAGACCGCCTCACTTCACTGCGTCCTCCCGCCCAAGGAAACTTTAAAGGCACATATCTCAAAAACCAAAAAAGCTAGCAAAATGTTGTCAATTGTAAAAATAATTGTCTTTATTTTACACTATTTTTCAACTTACAAAATTAATCTAGCTTAAAAACTGAAGAAGTTAGACGCAGAGAAACGAGAGGGTAGGGCTTCTCTGCGTCCTCCCGCCCGATGAGATTTTAAAGGCGCATATCTCGAAAACCAAAATAGTTAGCCAAAAGTTGTTAACCACAACATTGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATAGAAAAGGTTGTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAACTACCGTATCTTGCTTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>879</pcr_amplicon_size>
		<canonical_amplicon>AAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATMTTTTTTGGTTCGCGAGATATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35700</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>23613</contig_pos>
        <strand></strand>
        <context>ttataaaatt[A/T]agcatatttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATT</left_flank>
        <right_flank>AGCATATTTTTTTGGTTTATAAAAGTTGTCTAGCTTTAAAACCGAGGAAG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATAACTTTTAGATTTTTCAAAATTGCCAAAAAACGATTTTTCCATTTTTTTTTCCTTCCAAAAATTGTCATTTCCGGCAATTTTATAACCATTCTCTCACCGAAAAAGAACTTTTCCTTATCAGCAACCTATTATTATCACAAAGAGAAGTAATTATCATATGCACACCGAGCATAAAGGGGGGCGAGTGGGGGGAAAATAAACATGGGTGACTAGAAAAGGTTGTCAAAAAAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAGAAAGCGCGCGCACCTCTTACCTTTAAAGGCGCATATCTCATAAACAAGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATTAAGCATATTTTTTTGGTTTATAAAAGTTGTCTAGCTTTAAAACCGAGGAAGTTAGACGCAGAGAAACGAGACCGCCTCACTTCACTGCGTCCTCCCGCCCAAGGAAACTTTAAAGGCACATATCTCAAAAACCAAAAAAGCTAGCAAAATGTTGTCAATTGTAAAAATAATTGTCTTTATTTTACACTATTTTTCAACTTACAAAATTAATCTAGCTTAAAAACTGAAGAAGTTAGACGCAGAGAAACGAGAGGGTAGGGCTTCTCTGCGTCCTCCCGCCCGATGAGATTTTAAAGGCGCATATCTCGAAAACCAAAATAGTTAGCCAAAAGTTGTTAACCACAACATTGTTTTTTATAAAATTCTACACATTTTGTTAGTTTACCAAAATGTTCTAGCTTTCAAACCGAGAAAGTTAGACGCAGAGAAACAAGAAGGTATGACTACTCTGTGCCTCGCCCCTTCACTACTGAACTTTAAAGGCGCATATCTCAAAAACTA</canonical>
            <polymorphic>TAATAACTTTTAGATTTTTCAAAATTGCCAAAAAACGATTTTTCCATTTTTTTTTCCTTCCAAAAATTGTCATTTCCGGCAATTTTATAACCATTCTCTCACCGAAAAAGAACTTTTCCTTATCAGCAACCTATTATTATCACAAAGAGAAGTAATTATCATATGCACACCGAGCATAAAGGGGGGCGAGTGGGGGGAAAATAAACATGGGTGACTAGAAAAGGTTGTCAAAAAAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAGAAAGCGCGCGCACCTCTTACCTTTAAAGGCGCATATCTCATAAACAAGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATTWAGCATATTTTTTTGGTTTATAAAAGTTGTCTAGCTTTAAAACCGAGGAAGTTAGACGCAGAGAAACGAGACCGCCTCACTTCACTGCGTCCTCCCGCCCAAGGAAACTTTAAAGGCACATATCTCAAAAACCAAAAAAGCTAGCAAAATGTTGTCAATTGTAAAAATAATTGTCTTTATTTTACACTATTTTTCAACTTACAAAATTAATCTAGCTTAAAAACTGAAGAAGTTAGACGCAGAGAAACGAGAGGGTAGGGCTTCTCTGCGTCCTCCCGCCCGATGAGATTTTAAAGGCGCATATCTCGAAAACCAAAATAGTTAGCCAAAAGTTGTTAACCACAACATTGTTTTTTATAAAATTCTACACATTTTGTTAGTTTACCAAAATGTTCTAGCTTTCAAACCGAGAAAGTTAGACGCAGAGAAACAAGAAGGTATGACTACTCTGTGCCTCGCCCCTTCACTACTGAACTTTAAAGGCGCATATCTCAAAAACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>290 141 97 95 74 73 72 45 41 38 24 10</canonical_bands>
                <polymorphic_bands>290 141 110 97 95 74 73 45 41 24 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATAGAAAAGGTTGTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAACTACCGTATCTTGCTTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>879</pcr_amplicon_size>
		<canonical_amplicon>AAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAGAAAGCGCGCGCACCTCTTACCTTTAAAGGCGCATATCTCATAAACAAGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATTAAGCATATTTTTTTGGTTTATAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAGAAAGCGCGCGCACCTCTTACCTTTAAAGGCGCATATCTCATAAACAAGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATTWAGCATATTTTTTTGGTTTATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35701</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>23627</contig_pos>
        <strand></strand>
        <context>atattttttt[G/A]gtttataaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAGATTGCTAACTACAAAAATATTTGTTATAAAATTAAGCATATTTTTTT</left_flank>
        <right_flank>GTTTATAAAAGTTGTCTAGCTTTAAAACCGAGGAAGTTAGACGCAGAGAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCAAAATTGCCAAAAAACGATTTTTCCATTTTTTTTTCCTTCCAAAAATTGTCATTTCCGGCAATTTTATAACCATTCTCTCACCGAAAAAGAACTTTTCCTTATCAGCAACCTATTATTATCACAAAGAGAAGTAATTATCATATGCACACCGAGCATAAAGGGGGGCGAGTGGGGGGAAAATAAACATGGGTGACTAGAAAAGGTTGTCAAAAAAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAGAAAGCGCGCGCACCTCTTACCTTTAAAGGCGCATATCTCATAAACAAGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATTAAGCATATTTTTTTGGTTTATAAAAGTTGTCTAGCTTTAAAACCGAGGAAGTTAGACGCAGAGAAACGAGACCGCCTCACTTCACTGCGTCCTCCCGCCCAAGGAAACTTTAAAGGCACATATCTCAAAAACCAAAAAAGCTAGCAAAATGTTGTCAATTGTAAAAATAATTGTCTTTATTTTACACTATTTTTCAACTTACAAAATTAATCTAGCTTAAAAACTGAAGAAGTTAGACGCAGAGAAACGAGAGGGTAGGGCTTCTCTGCGTCCTCCCGCCCGATGAGATTTTAAAGGCGCATATCTCGAAAACCAAAATAGTTAGCCAAAAGTTGTTAACCACAACATTGTTTTTTATAAAATTCTACACATTTTGTTAGTTTACCAAAATGTTCTAGCTTTCAAACCGAGAAAGTTAGACGCAGAGAAACAAGAAGGTATGACTACTCTGTGCCTCGCCCCTTCACTACTGAACTTTAAAGGCGCATATCTCAAAAACTAAAATAGTTAACAAA</canonical>
            <polymorphic>TTTTTCAAAATTGCCAAAAAACGATTTTTCCATTTTTTTTTCCTTCCAAAAATTGTCATTTCCGGCAATTTTATAACCATTCTCTCACCGAAAAAGAACTTTTCCTTATCAGCAACCTATTATTATCACAAAGAGAAGTAATTATCATATGCACACCGAGCATAAAGGGGGGCGAGTGGGGGGAAAATAAACATGGGTGACTAGAAAAGGTTGTCAAAAAAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAGAAAGCGCGCGCACCTCTTACCTTTAAAGGCGCATATCTCATAAACAAGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATTAAGCATATTTTTTTRGTTTATAAAAGTTGTCTAGCTTTAAAACCGAGGAAGTTAGACGCAGAGAAACGAGACCGCCTCACTTCACTGCGTCCTCCCGCCCAAGGAAACTTTAAAGGCACATATCTCAAAAACCAAAAAAGCTAGCAAAATGTTGTCAATTGTAAAAATAATTGTCTTTATTTTACACTATTTTTCAACTTACAAAATTAATCTAGCTTAAAAACTGAAGAAGTTAGACGCAGAGAAACGAGAGGGTAGGGCTTCTCTGCGTCCTCCCGCCCGATGAGATTTTAAAGGCGCATATCTCGAAAACCAAAATAGTTAGCCAAAAGTTGTTAACCACAACATTGTTTTTTATAAAATTCTACACATTTTGTTAGTTTACCAAAATGTTCTAGCTTTCAAACCGAGAAAGTTAGACGCAGAGAAACAAGAAGGTATGACTACTCTGTGCCTCGCCCCTTCACTACTGAACTTTAAAGGCGCATATCTCAAAAACTAAAATAGTTAACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATAGAAAAGGTTGTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAACTACCGTATCTTGCTTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>879</pcr_amplicon_size>
		<canonical_amplicon>AAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAGAAAGCGCGCGCACCTCTTACCTTTAAAGGCGCATATCTCATAAACAAGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATTAAGCATATTTTTTTGGTTTATAAAAGTTGTCTAGCTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAGAAAGCGCGCGCACCTCTTACCTTTAAAGGCGCATATCTCATAAACAAGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATTAAGCATATTTTTTTRGTTTATAAAAGTTGTCTAGCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35702</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>23762</contig_pos>
        <strand></strand>
        <context>gctagcaaaa[T/A]sttgtcratt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CAAGGAAACTTTAAAGGCACATATCTCAAAAACCAAAAAAGCTAGCAAAA</left_flank>
        <right_flank>GTTGTCAATTGTAAAAATAATTGTCTTTATTTTACACTATTTTTCAACTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTAATTATCATATGCACACCGAGCATAAAGGGGGGCGAGTGGGGGGAAAATAAACATGGGTGACTAGAAAAGGTTGTCAAAAAAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAGAAAGCGCGCGCACCTCTTACCTTTAAAGGCGCATATCTCATAAACAAGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATTAAGCATATTTTTTTGGTTTATAAAAGTTGTCTAGCTTTAAAACCGAGGAAGTTAGACGCAGAGAAACGAGACCGCCTCACTTCACTGCGTCCTCCCGCCCAAGGAAACTTTAAAGGCACATATCTCAAAAACCAAAAAAGCTAGCAAAATGTTGTCAATTGTAAAAATAATTGTCTTTATTTTACACTATTTTTCAACTTACAAAATTAATCTAGCTTAAAAACTGAAGAAGTTAGACGCAGAGAAACGAGAGGGTAGGGCTTCTCTGCGTCCTCCCGCCCGATGAGATTTTAAAGGCGCATATCTCGAAAACCAAAATAGTTAGCCAAAAGTTGTTAACCACAACATTGTTTTTTATAAAATTCTACACATTTTGTTAGTTTACCAAAATGTTCTAGCTTTCAAACCGAGAAAGTTAGACGCAGAGAAACAAGAAGGTATGACTACTCTGTGCCTCGCCCCTTCACTACTGAACTTTAAAGGCGCATATCTCAAAAACTAAAATAGTTAACAAAAAGTGGTTCACTACAAAAATATTTTTCATAAAATTCTACACATTTTATCAGTATATTAAAACTGTCTATCTTTAAAATTAAGCAAGATACGGTAGTTTCAAAAAAAAATAGGTTCCCATTTTTAGCTCAATTTGC</canonical>
            <polymorphic>AAGTAATTATCATATGCACACCGAGCATAAAGGGGGGCGAGTGGGGGGAAAATAAACATGGGTGACTAGAAAAGGTTGTCAAAAAAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAGAAAGCGCGCGCACCTCTTACCTTTAAAGGCGCATATCTCATAAACAAGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATTAAGCATATTTTTTTGGTTTATAAAAGTTGTCTAGCTTTAAAACCGAGGAAGTTAGACGCAGAGAAACGAGACCGCCTCACTTCACTGCGTCCTCCCGCCCAAGGAAACTTTAAAGGCACATATCTCAAAAACCAAAAAAGCTAGCAAAAWGTTGTCAATTGTAAAAATAATTGTCTTTATTTTACACTATTTTTCAACTTACAAAATTAATCTAGCTTAAAAACTGAAGAAGTTAGACGCAGAGAAACGAGAGGGTAGGGCTTCTCTGCGTCCTCCCGCCCGATGAGATTTTAAAGGCGCATATCTCGAAAACCAAAATAGTTAGCCAAAAGTTGTTAACCACAACATTGTTTTTTATAAAATTCTACACATTTTGTTAGTTTACCAAAATGTTCTAGCTTTCAAACCGAGAAAGTTAGACGCAGAGAAACAAGAAGGTATGACTACTCTGTGCCTCGCCCCTTCACTACTGAACTTTAAAGGCGCATATCTCAAAAACTAAAATAGTTAACAAAAAGTGGTTCACTACAAAAATATTTTTCATAAAATTCTACACATTTTATCAGTATATTAAAACTGTCTATCTTTAAAATTAAGCAAGATACGGTAGTTTCAAAAAAAAATAGGTTCCCATTTTTAGCTCAATTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATAGAAAAGGTTGTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAACTACCGTATCTTGCTTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>879</pcr_amplicon_size>
		<canonical_amplicon>AAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAGAAAGCGCGCGCACCTCTTACCTTTAAAGGCGCATATCTCATAAACAAGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATTAAGCATATTTTTTTGGTTTATAAAAGTTGTCTAGCTTTAAAACCGAGGAAGTTAGACGCAGAGAAACGAGACCGCCTCACTTCACTGCGTCCTCCCGCCCAAGGAAACTTTAAAGGCACATATCTCAAAAACCAAAAAAGCTAGCAAAATGTTGTCAATTGTAAAAATAATTGTCTTTATTTTACACTATTTTTCAACTTACAAAATTAATCTAGCTTAAAAACTGAAGAAGTTAGACGCAGAGAAACGAGAGGGTAGGGCTTCTCTGCGTCCTCCCGCCCGATGAGATTTTAAAGGCGCATATCTCGAAAACCAAAATAGTTAGCCAAAAGTTGTTAACCACAACATTGTTTTTTATAAAATTCTACACATTTTGTTAGTTTACCAAAATGTTCTAGCTTTCAAACCGAGAAAGTTAGACGCAGAGAAACAAGAAGGTATGACTACTCTGTGCCTCGCCCCTTCACTACTGAACTTTAAAGGCGCATATCTCAAAAACTAAAATAGTTAACAAAAAGTGGTTCACTACAAAAATATTTTTCATAAAATTCTACACATTTTATCAGTATATTAAAACTGTCTATCTTTAAAATTAAGCAAGATACGGTAGTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAGAAAGCGCGCGCACCTCTTACCTTTAAAGGCGCATATCTCATAAACAAGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATTAAGCATATTTTTTTGGTTTATAAAAGTTGTCTAGCTTTAAAACCGAGGAAGTTAGACGCAGAGAAACGAGACCGCCTCACTTCACTGCGTCCTCCCGCCCAAGGAAACTTTAAAGGCACATATCTCAAAAACCAAAAAAGCTAGCAAAAWGTTGTCAATTGTAAAAATAATTGTCTTTATTTTACACTATTTTTCAACTTACAAAATTAATCTAGCTTAAAAACTGAAGAAGTTAGACGCAGAGAAACGAGAGGGTAGGGCTTCTCTGCGTCCTCCCGCCCGATGAGATTTTAAAGGCGCATATCTCGAAAACCAAAATAGTTAGCCAAAAGTTGTTAACCACAACATTGTTTTTTATAAAATTCTACACATTTTGTTAGTTTACCAAAATGTTCTAGCTTTCAAACCGAGAAAGTTAGACGCAGAGAAACAAGAAGGTATGACTACTCTGTGCCTCGCCCCTTCACTACTGAACTTTAAAGGCGCATATCTCAAAAACTAAAATAGTTAACAAAAAGTGGTTCACTACAAAAATATTTTTCATAAAATTCTACACATTTTATCAGTATATTAAAACTGTCTATCTTTAAAATTAAGCAAGATACGGTAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35703</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>23763</contig_pos>
        <strand></strand>
        <context>ctagcaaaaw[G/C]ttgtcrattg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AAGGAAACTTTAAAGGCACATATCTCAAAAACCAAAAAAGCTAGCAAAAT</left_flank>
        <right_flank>TTGTCAATTGTAAAAATAATTGTCTTTATTTTACACTATTTTTCAACTTA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTAATTATCATATGCACACCGAGCATAAAGGGGGGCGAGTGGGGGGAAAATAAACATGGGTGACTAGAAAAGGTTGTCAAAAAAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAGAAAGCGCGCGCACCTCTTACCTTTAAAGGCGCATATCTCATAAACAAGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATTAAGCATATTTTTTTGGTTTATAAAAGTTGTCTAGCTTTAAAACCGAGGAAGTTAGACGCAGAGAAACGAGACCGCCTCACTTCACTGCGTCCTCCCGCCCAAGGAAACTTTAAAGGCACATATCTCAAAAACCAAAAAAGCTAGCAAAATGTTGTCAATTGTAAAAATAATTGTCTTTATTTTACACTATTTTTCAACTTACAAAATTAATCTAGCTTAAAAACTGAAGAAGTTAGACGCAGAGAAACGAGAGGGTAGGGCTTCTCTGCGTCCTCCCGCCCGATGAGATTTTAAAGGCGCATATCTCGAAAACCAAAATAGTTAGCCAAAAGTTGTTAACCACAACATTGTTTTTTATAAAATTCTACACATTTTGTTAGTTTACCAAAATGTTCTAGCTTTCAAACCGAGAAAGTTAGACGCAGAGAAACAAGAAGGTATGACTACTCTGTGCCTCGCCCCTTCACTACTGAACTTTAAAGGCGCATATCTCAAAAACTAAAATAGTTAACAAAAAGTGGTTCACTACAAAAATATTTTTCATAAAATTCTACACATTTTATCAGTATATTAAAACTGTCTATCTTTAAAATTAAGCAAGATACGGTAGTTTCAAAAAAAAATAGGTTCCCATTTTTAGCTCAATTTGCA</canonical>
            <polymorphic>AGTAATTATCATATGCACACCGAGCATAAAGGGGGGCGAGTGGGGGGAAAATAAACATGGGTGACTAGAAAAGGTTGTCAAAAAAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAGAAAGCGCGCGCACCTCTTACCTTTAAAGGCGCATATCTCATAAACAAGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATTAAGCATATTTTTTTGGTTTATAAAAGTTGTCTAGCTTTAAAACCGAGGAAGTTAGACGCAGAGAAACGAGACCGCCTCACTTCACTGCGTCCTCCCGCCCAAGGAAACTTTAAAGGCACATATCTCAAAAACCAAAAAAGCTAGCAAAATSTTGTCAATTGTAAAAATAATTGTCTTTATTTTACACTATTTTTCAACTTACAAAATTAATCTAGCTTAAAAACTGAAGAAGTTAGACGCAGAGAAACGAGAGGGTAGGGCTTCTCTGCGTCCTCCCGCCCGATGAGATTTTAAAGGCGCATATCTCGAAAACCAAAATAGTTAGCCAAAAGTTGTTAACCACAACATTGTTTTTTATAAAATTCTACACATTTTGTTAGTTTACCAAAATGTTCTAGCTTTCAAACCGAGAAAGTTAGACGCAGAGAAACAAGAAGGTATGACTACTCTGTGCCTCGCCCCTTCACTACTGAACTTTAAAGGCGCATATCTCAAAAACTAAAATAGTTAACAAAAAGTGGTTCACTACAAAAATATTTTTCATAAAATTCTACACATTTTATCAGTATATTAAAACTGTCTATCTTTAAAATTAAGCAAGATACGGTAGTTTCAAAAAAAAATAGGTTCCCATTTTTAGCTCAATTTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATAGAAAAGGTTGTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAACTACCGTATCTTGCTTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>879</pcr_amplicon_size>
		<canonical_amplicon>AAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAGAAAGCGCGCGCACCTCTTACCTTTAAAGGCGCATATCTCATAAACAAGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATTAAGCATATTTTTTTGGTTTATAAAAGTTGTCTAGCTTTAAAACCGAGGAAGTTAGACGCAGAGAAACGAGACCGCCTCACTTCACTGCGTCCTCCCGCCCAAGGAAACTTTAAAGGCACATATCTCAAAAACCAAAAAAGCTAGCAAAATGTTGTCAATTGTAAAAATAATTGTCTTTATTTTACACTATTTTTCAACTTACAAAATTAATCTAGCTTAAAAACTGAAGAAGTTAGACGCAGAGAAACGAGAGGGTAGGGCTTCTCTGCGTCCTCCCGCCCGATGAGATTTTAAAGGCGCATATCTCGAAAACCAAAATAGTTAGCCAAAAGTTGTTAACCACAACATTGTTTTTTATAAAATTCTACACATTTTGTTAGTTTACCAAAATGTTCTAGCTTTCAAACCGAGAAAGTTAGACGCAGAGAAACAAGAAGGTATGACTACTCTGTGCCTCGCCCCTTCACTACTGAACTTTAAAGGCGCATATCTCAAAAACTAAAATAGTTAACAAAAAGTGGTTCACTACAAAAATATTTTTCATAAAATTCTACACATTTTATCAGTATATTAAAACTGTCTATCTTTAAAATTAAGCAAGATACGGTAGTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAGAAAGCGCGCGCACCTCTTACCTTTAAAGGCGCATATCTCATAAACAAGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATTAAGCATATTTTTTTGGTTTATAAAAGTTGTCTAGCTTTAAAACCGAGGAAGTTAGACGCAGAGAAACGAGACCGCCTCACTTCACTGCGTCCTCCCGCCCAAGGAAACTTTAAAGGCACATATCTCAAAAACCAAAAAAGCTAGCAAAATSTTGTCAATTGTAAAAATAATTGTCTTTATTTTACACTATTTTTCAACTTACAAAATTAATCTAGCTTAAAAACTGAAGAAGTTAGACGCAGAGAAACGAGAGGGTAGGGCTTCTCTGCGTCCTCCCGCCCGATGAGATTTTAAAGGCGCATATCTCGAAAACCAAAATAGTTAGCCAAAAGTTGTTAACCACAACATTGTTTTTTATAAAATTCTACACATTTTGTTAGTTTACCAAAATGTTCTAGCTTTCAAACCGAGAAAGTTAGACGCAGAGAAACAAGAAGGTATGACTACTCTGTGCCTCGCCCCTTCACTACTGAACTTTAAAGGCGCATATCTCAAAAACTAAAATAGTTAACAAAAAGTGGTTCACTACAAAAATATTTTTCATAAAATTCTACACATTTTATCAGTATATTAAAACTGTCTATCTTTAAAATTAAGCAAGATACGGTAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35704</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>23769</contig_pos>
        <strand></strand>
        <context>aaawsttgtc[A/G]attgtaaaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTTTAAAGGCACATATCTCAAAAACCAAAAAAGCTAGCAAAATGTTGTC</left_flank>
        <right_flank>ATTGTAAAAATAATTGTCTTTATTTTACACTATTTTTCAACTTACAAAAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCATATGCACACCGAGCATAAAGGGGGGCGAGTGGGGGGAAAATAAACATGGGTGACTAGAAAAGGTTGTCAAAAAAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAGAAAGCGCGCGCACCTCTTACCTTTAAAGGCGCATATCTCATAAACAAGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATTAAGCATATTTTTTTGGTTTATAAAAGTTGTCTAGCTTTAAAACCGAGGAAGTTAGACGCAGAGAAACGAGACCGCCTCACTTCACTGCGTCCTCCCGCCCAAGGAAACTTTAAAGGCACATATCTCAAAAACCAAAAAAGCTAGCAAAATGTTGTCAATTGTAAAAATAATTGTCTTTATTTTACACTATTTTTCAACTTACAAAATTAATCTAGCTTAAAAACTGAAGAAGTTAGACGCAGAGAAACGAGAGGGTAGGGCTTCTCTGCGTCCTCCCGCCCGATGAGATTTTAAAGGCGCATATCTCGAAAACCAAAATAGTTAGCCAAAAGTTGTTAACCACAACATTGTTTTTTATAAAATTCTACACATTTTGTTAGTTTACCAAAATGTTCTAGCTTTCAAACCGAGAAAGTTAGACGCAGAGAAACAAGAAGGTATGACTACTCTGTGCCTCGCCCCTTCACTACTGAACTTTAAAGGCGCATATCTCAAAAACTAAAATAGTTAACAAAAAGTGGTTCACTACAAAAATATTTTTCATAAAATTCTACACATTTTATCAGTATATTAAAACTGTCTATCTTTAAAATTAAGCAAGATACGGTAGTTTCAAAAAAAAATAGGTTCCCATTTTTAGCTCAATTTGCAGTAAAA</canonical>
            <polymorphic>TATCATATGCACACCGAGCATAAAGGGGGGCGAGTGGGGGGAAAATAAACATGGGTGACTAGAAAAGGTTGTCAAAAAAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAGAAAGCGCGCGCACCTCTTACCTTTAAAGGCGCATATCTCATAAACAAGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATTAAGCATATTTTTTTGGTTTATAAAAGTTGTCTAGCTTTAAAACCGAGGAAGTTAGACGCAGAGAAACGAGACCGCCTCACTTCACTGCGTCCTCCCGCCCAAGGAAACTTTAAAGGCACATATCTCAAAAACCAAAAAAGCTAGCAAAATGTTGTCRATTGTAAAAATAATTGTCTTTATTTTACACTATTTTTCAACTTACAAAATTAATCTAGCTTAAAAACTGAAGAAGTTAGACGCAGAGAAACGAGAGGGTAGGGCTTCTCTGCGTCCTCCCGCCCGATGAGATTTTAAAGGCGCATATCTCGAAAACCAAAATAGTTAGCCAAAAGTTGTTAACCACAACATTGTTTTTTATAAAATTCTACACATTTTGTTAGTTTACCAAAATGTTCTAGCTTTCAAACCGAGAAAGTTAGACGCAGAGAAACAAGAAGGTATGACTACTCTGTGCCTCGCCCCTTCACTACTGAACTTTAAAGGCGCATATCTCAAAAACTAAAATAGTTAACAAAAAGTGGTTCACTACAAAAATATTTTTCATAAAATTCTACACATTTTATCAGTATATTAAAACTGTCTATCTTTAAAATTAAGCAAGATACGGTAGTTTCAAAAAAAAATAGGTTCCCATTTTTAGCTCAATTTGCAGTAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>186 163 160 158 156 53 44 36 18 14 12</canonical_bands>
                <polymorphic_bands>186 172 163 158 156 53 44 36 18 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATAGAAAAGGTTGTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAACTACCGTATCTTGCTTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>879</pcr_amplicon_size>
		<canonical_amplicon>AAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAGAAAGCGCGCGCACCTCTTACCTTTAAAGGCGCATATCTCATAAACAAGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATTAAGCATATTTTTTTGGTTTATAAAAGTTGTCTAGCTTTAAAACCGAGGAAGTTAGACGCAGAGAAACGAGACCGCCTCACTTCACTGCGTCCTCCCGCCCAAGGAAACTTTAAAGGCACATATCTCAAAAACCAAAAAAGCTAGCAAAATGTTGTCAATTGTAAAAATAATTGTCTTTATTTTACACTATTTTTCAACTTACAAAATTAATCTAGCTTAAAAACTGAAGAAGTTAGACGCAGAGAAACGAGAGGGTAGGGCTTCTCTGCGTCCTCCCGCCCGATGAGATTTTAAAGGCGCATATCTCGAAAACCAAAATAGTTAGCCAAAAGTTGTTAACCACAACATTGTTTTTTATAAAATTCTACACATTTTGTTAGTTTACCAAAATGTTCTAGCTTTCAAACCGAGAAAGTTAGACGCAGAGAAACAAGAAGGTATGACTACTCTGTGCCTCGCCCCTTCACTACTGAACTTTAAAGGCGCATATCTCAAAAACTAAAATAGTTAACAAAAAGTGGTTCACTACAAAAATATTTTTCATAAAATTCTACACATTTTATCAGTATATTAAAACTGTCTATCTTTAAAATTAAGCAAGATACGGTAGTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAGAAAGCGCGCGCACCTCTTACCTTTAAAGGCGCATATCTCATAAACAAGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATTAAGCATATTTTTTTGGTTTATAAAAGTTGTCTAGCTTTAAAACCGAGGAAGTTAGACGCAGAGAAACGAGACCGCCTCACTTCACTGCGTCCTCCCGCCCAAGGAAACTTTAAAGGCACATATCTCAAAAACCAAAAAAGCTAGCAAAATGTTGTCRATTGTAAAAATAATTGTCTTTATTTTACACTATTTTTCAACTTACAAAATTAATCTAGCTTAAAAACTGAAGAAGTTAGACGCAGAGAAACGAGAGGGTAGGGCTTCTCTGCGTCCTCCCGCCCGATGAGATTTTAAAGGCGCATATCTCGAAAACCAAAATAGTTAGCCAAAAGTTGTTAACCACAACATTGTTTTTTATAAAATTCTACACATTTTGTTAGTTTACCAAAATGTTCTAGCTTTCAAACCGAGAAAGTTAGACGCAGAGAAACAAGAAGGTATGACTACTCTGTGCCTCGCCCCTTCACTACTGAACTTTAAAGGCGCATATCTCAAAAACTAAAATAGTTAACAAAAAGTGGTTCACTACAAAAATATTTTTCATAAAATTCTACACATTTTATCAGTATATTAAAACTGTCTATCTTTAAAATTAAGCAAGATACGGTAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35705</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>23781</contig_pos>
        <strand></strand>
        <context>ttgtaaaaat[A/G]attgtcttta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATATCTCAAAAACCAAAAAAGCTAGCAAAATGTTGTCAATTGTAAAAAT</left_flank>
        <right_flank>ATTGTCTTTATTTTACACTATTTTTCAACTTACAAAATTAATCTAGCTTA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCGAGCATAAAGGGGGGCGAGTGGGGGGAAAATAAACATGGGTGACTAGAAAAGGTTGTCAAAAAAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAGAAAGCGCGCGCACCTCTTACCTTTAAAGGCGCATATCTCATAAACAAGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATTAAGCATATTTTTTTGGTTTATAAAAGTTGTCTAGCTTTAAAACCGAGGAAGTTAGACGCAGAGAAACGAGACCGCCTCACTTCACTGCGTCCTCCCGCCCAAGGAAACTTTAAAGGCACATATCTCAAAAACCAAAAAAGCTAGCAAAATGTTGTCAATTGTAAAAATAATTGTCTTTATTTTACACTATTTTTCAACTTACAAAATTAATCTAGCTTAAAAACTGAAGAAGTTAGACGCAGAGAAACGAGAGGGTAGGGCTTCTCTGCGTCCTCCCGCCCGATGAGATTTTAAAGGCGCATATCTCGAAAACCAAAATAGTTAGCCAAAAGTTGTTAACCACAACATTGTTTTTTATAAAATTCTACACATTTTGTTAGTTTACCAAAATGTTCTAGCTTTCAAACCGAGAAAGTTAGACGCAGAGAAACAAGAAGGTATGACTACTCTGTGCCTCGCCCCTTCACTACTGAACTTTAAAGGCGCATATCTCAAAAACTAAAATAGTTAACAAAAAGTGGTTCACTACAAAAATATTTTTCATAAAATTCTACACATTTTATCAGTATATTAAAACTGTCTATCTTTAAAATTAAGCAAGATACGGTAGTTTCAAAAAAAAATAGGTTCCCATTTTTAGCTCAATTTGCAGTAAAATGAATCTAAAAC</canonical>
            <polymorphic>ACCGAGCATAAAGGGGGGCGAGTGGGGGGAAAATAAACATGGGTGACTAGAAAAGGTTGTCAAAAAAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAGAAAGCGCGCGCACCTCTTACCTTTAAAGGCGCATATCTCATAAACAAGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATTAAGCATATTTTTTTGGTTTATAAAAGTTGTCTAGCTTTAAAACCGAGGAAGTTAGACGCAGAGAAACGAGACCGCCTCACTTCACTGCGTCCTCCCGCCCAAGGAAACTTTAAAGGCACATATCTCAAAAACCAAAAAAGCTAGCAAAATGTTGTCAATTGTAAAAATRATTGTCTTTATTTTACACTATTTTTCAACTTACAAAATTAATCTAGCTTAAAAACTGAAGAAGTTAGACGCAGAGAAACGAGAGGGTAGGGCTTCTCTGCGTCCTCCCGCCCGATGAGATTTTAAAGGCGCATATCTCGAAAACCAAAATAGTTAGCCAAAAGTTGTTAACCACAACATTGTTTTTTATAAAATTCTACACATTTTGTTAGTTTACCAAAATGTTCTAGCTTTCAAACCGAGAAAGTTAGACGCAGAGAAACAAGAAGGTATGACTACTCTGTGCCTCGCCCCTTCACTACTGAACTTTAAAGGCGCATATCTCAAAAACTAAAATAGTTAACAAAAAGTGGTTCACTACAAAAATATTTTTCATAAAATTCTACACATTTTATCAGTATATTAAAACTGTCTATCTTTAAAATTAAGCAAGATACGGTAGTTTCAAAAAAAAATAGGTTCCCATTTTTAGCTCAATTTGCAGTAAAATGAATCTAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>186 163 160 156 146 53 44 36 26 18 12</canonical_bands>
                <polymorphic_bands>186 163 160 156 146 53 48 44 26 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATAGAAAAGGTTGTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAACTACCGTATCTTGCTTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>879</pcr_amplicon_size>
		<canonical_amplicon>AAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAGAAAGCGCGCGCACCTCTTACCTTTAAAGGCGCATATCTCATAAACAAGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATTAAGCATATTTTTTTGGTTTATAAAAGTTGTCTAGCTTTAAAACCGAGGAAGTTAGACGCAGAGAAACGAGACCGCCTCACTTCACTGCGTCCTCCCGCCCAAGGAAACTTTAAAGGCACATATCTCAAAAACCAAAAAAGCTAGCAAAATGTTGTCAATTGTAAAAATAATTGTCTTTATTTTACACTATTTTTCAACTTACAAAATTAATCTAGCTTAAAAACTGAAGAAGTTAGACGCAGAGAAACGAGAGGGTAGGGCTTCTCTGCGTCCTCCCGCCCGATGAGATTTTAAAGGCGCATATCTCGAAAACCAAAATAGTTAGCCAAAAGTTGTTAACCACAACATTGTTTTTTATAAAATTCTACACATTTTGTTAGTTTACCAAAATGTTCTAGCTTTCAAACCGAGAAAGTTAGACGCAGAGAAACAAGAAGGTATGACTACTCTGTGCCTCGCCCCTTCACTACTGAACTTTAAAGGCGCATATCTCAAAAACTAAAATAGTTAACAAAAAGTGGTTCACTACAAAAATATTTTTCATAAAATTCTACACATTTTATCAGTATATTAAAACTGTCTATCTTTAAAATTAAGCAAGATACGGTAGTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATAGAAAAGGTTGTCAAAAATCTCAAAAACCAGAGTAGCTAGGAGAAAGTTTTTAACTAGGGAAATATTTTTTGTAGAATTTTACACATTTTTTTAATTTGCAGCTTTTTGATATATTTTTTGGTTCGCGAGATATGAATGAAGAAAGAGAGCACAGAGAAACGAGAAAGCGCGCGCACCTCTTACCTTTAAAGGCGCATATCTCATAAACAAGAAAAGCTAGCAGAAGATTGCTAACTACAAAAATATTTGTTATAAAATTAAGCATATTTTTTTGGTTTATAAAAGTTGTCTAGCTTTAAAACCGAGGAAGTTAGACGCAGAGAAACGAGACCGCCTCACTTCACTGCGTCCTCCCGCCCAAGGAAACTTTAAAGGCACATATCTCAAAAACCAAAAAAGCTAGCAAAATGTTGTCAATTGTAAAAATRATTGTCTTTATTTTACACTATTTTTCAACTTACAAAATTAATCTAGCTTAAAAACTGAAGAAGTTAGACGCAGAGAAACGAGAGGGTAGGGCTTCTCTGCGTCCTCCCGCCCGATGAGATTTTAAAGGCGCATATCTCGAAAACCAAAATAGTTAGCCAAAAGTTGTTAACCACAACATTGTTTTTTATAAAATTCTACACATTTTGTTAGTTTACCAAAATGTTCTAGCTTTCAAACCGAGAAAGTTAGACGCAGAGAAACAAGAAGGTATGACTACTCTGTGCCTCGCCCCTTCACTACTGAACTTTAAAGGCGCATATCTCAAAAACTAAAATAGTTAACAAAAAGTGGTTCACTACAAAAATATTTTTCATAAAATTCTACACATTTTATCAGTATATTAAAACTGTCTATCTTTAAAATTAAGCAAGATACGGTAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35706</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>53684</contig_pos>
        <strand>+</strand>
        <context>ATTTTGGTTA[A/G]AAAAAGGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTGAAGAAAAAACCGGAGCAAATAGACTGAAATTGCATATTTTGGTTA</left_flank>
        <right_flank>AAAAAGGATTTATGTGAAAAATTAGAGAAGAAGTCATCAGAAATTGGCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTGGTGCAAAATTCATGAAAAACAGTCCAAAATGCAAGAAAAATAGCTCAAAATTATCAAAATATGATCAAGAAAAAAGCCAAAAATAGATCGAAATTCATTGAAAATGGTTCAAAATCGATTTTTAAAAATCCAAAAATAAAGAATTTTTGGTCGAAAATGGTCAAAAACTGCCCAAAAAACTCGAAAAATTCGCAATTTCTTTGCAGCTACCAACAACAGAAGCACGCTACGTCGCCGACTTCATTTCGCTGTTTGTGGGCAGAAGAAACACTTGTGAAACCCTTCGGTGAGGAGCGAAAAGAAGAAAAAAGGAGAGCGCTTCCAATATAAAATGCATAATCTTTTTTTTTCGTCGTCGTTTTTTCTGCTTATTTTTGTTGCATTTTTTTTGATCCAGAAGAGCAACAGGCGATTTTTGATATTCATTGCCTTTTTCAGGGGAAATTTGAAGAAAAAACCGGAGCAAATAGACTGAAATTGCATATTTTGGTTAAAAAAAGGATTTATGTGAAAAATTAGAGAAGAAGTCATCAGAAATTGGCTGAAATCGCTGGAAAAACTGTCATTATTCTCCTATTTTTAGCGCCAAAAAACCGGAAATTCGAATTTTTGGACATCTGGAAACACAGAAATCTCTAAAACTTTGAAATTTTCACTCAAAAAACCGGAAAATAATAGATTTTCAATCGAAAAATCGTCATTTTTACCGATTTTGGCGCCTGAAACTCCGAAAATTTGATTTTCGGACATCTGGAAACATAGATAGGCAACTTTTTTATAGTTTTAGAATCTACAGTAATCTTGAAAATTCGAAAAAATGACTGAAAATCATAAAATTCAGACAAGAAATGGTAATTTTCCCTTAGTGTTTGGTAAAAATCACTATTTTTCTCAATTTTTGGCTCAAAAATGTCGGAAAATCGATTTTTGACAATTTTGGGACATCTGGAAACACATAAACACAAAAAATTTATAAATTTTCATATTTTTTTAA</canonical>
            <polymorphic>AAACTGGTGCAAAATTCATGAAAAACAGTCCAAAATGCAAGAAAAATAGCTCAAAATTATCAAAATATGATCAAGAAAAAAGCCAAAAATAGATCGAAATTCATTGAAAATGGTTCAAAATCGATTTTTAAAAATCCAAAAATAAAGAATTTTTGGTCGAAAATGGTCAAAAACTGCCCAAAAAACTCGAAAAATTCGCAATTTCTTTGCAGCTACCAACAACAGAAGCACGCTACGTCGCCGACTTCATTTCGCTGTTTGTGGGCAGAAGAAACACTTGTGAAACCCTTCGGTGAGGAGCGAAAAGAAGAAAAAAGGAGAGCGCTTCCAATATAAAATGCATAATCTTTTTTTTTCGTCGTCGTTTTTTCTGCTTATTTTTGTTGCATTTTTTTTGATCCAGAAGAGCAACAGGCGATTTTTGATATTCATTGCCTTTTTCAGGGGAAATTTGAAGAAAAAACCGGAGCAAATAGACTGAAATTGCATATTTTGGTTARAAAAAGGATTTATGTGAAAAATTAGAGAAGAAGTCATCAGAAATTGGCTGAAATCGCTGGAAAAACTGTCATTATTCTCCTATTTTTAGCGCCAAAAAACCGGAAATTCGAATTTTTGGACATCTGGAAACACAGAAATCTCTAAAACTTTGAAATTTTCACTCAAAAAACCGGAAAATAATAGATTTTCAATCGAAAAATCGTCATTTTTACCGATTTTGGCGCCTGAAACTCCGAAAATTTGATTTTCGGACATCTGGAAACATAGATAGGCAACTTTTTTATAGTTTTAGAATCTACAGTAATCTTGAAAATTCGAAAAAATGACTGAAAATCATAAAATTCAGACAAGAAATGGTAATTTTCCCTTAGTGTTTGGTAAAAATCACTATTTTTCTCAATTTTTGGCTCAAAAATGTCGGAAAATCGATTTTTGACAATTTTGGGACATCTGGAAACACATAAACACAAAAAATTTATAAATTTTCATATTTTTTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>500 369 128 3</canonical_bands>
                <polymorphic_bands>869 128 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTGATATTCATTGCCTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAGTTTTAGAGATTTCTGTG</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTGATATTCATTGCCTTTTTCAGGGGAAATTTGAAGAAAAAACCGGAGCAAATAGACTGAAATTGCATATTTTGGTTAAAAAAAGGATTTATGTGAAAAATTAGAGAAGAAGTCATCAGAAATTGGCTGAAATCGCTGGAAAAACTGTCATTATTCTCCTATTTTTAGCGCCAAAAAACCGGAAATTCGAATTTTTGGACATCTGGAAACACAGAAATCTCTAAAACTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTGATATTCATTGCCTTTTTCAGGGGAAATTTGAAGAAAAAACCGGAGCAAATAGACTGAAATTGCATATTTTGGTTARAAAAAGGATTTATGTGAAAAATTAGAGAAGAAGTCATCAGAAATTGGCTGAAATCGCTGGAAAAACTGTCATTATTCTCCTATTTTTAGCGCCAAAAAACCGGAAATTCGAATTTTTGGACATCTGGAAACACAGAAATCTCTAAAACTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35707</snp_id>
        <super_contig>c010001387.Contig1</super_contig>
        <contig_pos>53717</contig_pos>
        <strand></strand>
        <context>TAGAGAAGAA[G/A]TCATCAGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTGCATATTTTGGTTAAAAAAAGGATTTATGTGAAAAATTAGAGAAGAA</left_flank>
        <right_flank>TCATCAGAAATTGGCTGAAATCGCTGGAAAAACTGTCATTATTCTCCTAT</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGCAAGAAAAATAGCTCAAAATTATCAAAATATGATCAAGAAAAAAGCCAAAAATAGATCGAAATTCATTGAAAATGGTTCAAAATCGATTTTTAAAAATCCAAAAATAAAGAATTTTTGGTCGAAAATGGTCAAAAACTGCCCAAAAAACTCGAAAAATTCGCAATTTCTTTGCAGCTACCAACAACAGAAGCACGCTACGTCGCCGACTTCATTTCGCTGTTTGTGGGCAGAAGAAACACTTGTGAAACCCTTCGGTGAGGAGCGAAAAGAAGAAAAAAGGAGAGCGCTTCCAATATAAAATGCATAATCTTTTTTTTTCGTCGTCGTTTTTTCTGCTTATTTTTGTTGCATTTTTTTTGATCCAGAAGAGCAACAGGCGATTTTTGATATTCATTGCCTTTTTCAGGGGAAATTTGAAGAAAAAACCGGAGCAAATAGACTGAAATTGCATATTTTGGTTAAAAAAAGGATTTATGTGAAAAATTAGAGAAGAAGTCATCAGAAATTGGCTGAAATCGCTGGAAAAACTGTCATTATTCTCCTATTTTTAGCGCCAAAAAACCGGAAATTCGAATTTTTGGACATCTGGAAACACAGAAATCTCTAAAACTTTGAAATTTTCACTCAAAAAACCGGAAAATAATAGATTTTCAATCGAAAAATCGTCATTTTTACCGATTTTGGCGCCTGAAACTCCGAAAATTTGATTTTCGGACATCTGGAAACATAGATAGGCAACTTTTTTATAGTTTTAGAATCTACAGTAATCTTGAAAATTCGAAAAAATGACTGAAAATCATAAAATTCAGACAAGAAATGGTAATTTTCCCTTAGTGTTTGGTAAAAATCACTATTTTTCTCAATTTTTGGCTCAAAAATGTCGGAAAATCGATTTTTGACAATTTTGGGACATCTGGAAACACATAAACACAAAAAATTTATAAATTTTCATATTTTTTTAATCGGAAAATTCCGAATTTCAGAGCTAAAAAACA</canonical>
            <polymorphic>AATGCAAGAAAAATAGCTCAAAATTATCAAAATATGATCAAGAAAAAAGCCAAAAATAGATCGAAATTCATTGAAAATGGTTCAAAATCGATTTTTAAAAATCCAAAAATAAAGAATTTTTGGTCGAAAATGGTCAAAAACTGCCCAAAAAACTCGAAAAATTCGCAATTTCTTTGCAGCTACCAACAACAGAAGCACGCTACGTCGCCGACTTCATTTCGCTGTTTGTGGGCAGAAGAAACACTTGTGAAACCCTTCGGTGAGGAGCGAAAAGAAGAAAAAAGGAGAGCGCTTCCAATATAAAATGCATAATCTTTTTTTTTCGTCGTCGTTTTTTCTGCTTATTTTTGTTGCATTTTTTTTGATCCAGAAGAGCAACAGGCGATTTTTGATATTCATTGCCTTTTTCAGGGGAAATTTGAAGAAAAAACCGGAGCAAATAGACTGAAATTGCATATTTTGGTTAAAAAAAGGATTTATGTGAAAAATTAGAGAAGAARTCATCAGAAATTGGCTGAAATCGCTGGAAAAACTGTCATTATTCTCCTATTTTTAGCGCCAAAAAACCGGAAATTCGAATTTTTGGACATCTGGAAACACAGAAATCTCTAAAACTTTGAAATTTTCACTCAAAAAACCGGAAAATAATAGATTTTCAATCGAAAAATCGTCATTTTTACCGATTTTGGCGCCTGAAACTCCGAAAATTTGATTTTCGGACATCTGGAAACATAGATAGGCAACTTTTTTATAGTTTTAGAATCTACAGTAATCTTGAAAATTCGAAAAAATGACTGAAAATCATAAAATTCAGACAAGAAATGGTAATTTTCCCTTAGTGTTTGGTAAAAATCACTATTTTTCTCAATTTTTGGCTCAAAAATGTCGGAAAATCGATTTTTGACAATTTTGGGACATCTGGAAACACATAAACACAAAAAATTTATAAATTTTCATATTTTTTTAATCGGAAAATTCCGAATTTCAGAGCTAAAAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTGATATTCATTGCCTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAGTTTTAGAGATTTCTGTG</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTGATATTCATTGCCTTTTTCAGGGGAAATTTGAAGAAAAAACCGGAGCAAATAGACTGAAATTGCATATTTTGGTTAAAAAAAGGATTTATGTGAAAAATTAGAGAAGAAGTCATCAGAAATTGGCTGAAATCGCTGGAAAAACTGTCATTATTCTCCTATTTTTAGCGCCAAAAAACCGGAAATTCGAATTTTTGGACATCTGGAAACACAGAAATCTCTAAAACTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTGATATTCATTGCCTTTTTCAGGGGAAATTTGAAGAAAAAACCGGAGCAAATAGACTGAAATTGCATATTTTGGTTAAAAAAAGGATTTATGTGAAAAATTAGAGAAGAARTCATCAGAAATTGGCTGAAATCGCTGGAAAAACTGTCATTATTCTCCTATTTTTAGCGCCAAAAAACCGGAAATTCGAATTTTTGGACATCTGGAAACACAGAAATCTCTAAAACTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35708</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>44919</contig_pos>
        <strand>+</strand>
        <context>AATTTGTTTT[C/T]AGTAGAGCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAACTGCTATGAATCCACATAGGAGGTCTGAAATTGTGATAATTTGTTTT</left_flank>
        <right_flank>AGTAGAGCACATTTGCAAACCTATGAAGAATTCAGCCACAGAAGGAGTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGGAACAACTTTTCTCATTTTACCAAATTCTTGCAACAGCAAAAAAAGTTATTCAACTAAGGACTTTTCCCAATCATCTAAAAATTTTGAAACCGTACAGCGAAAGCAGGGCTGGGCGAGCAATCGGCTTTCGCGGGAAACAGATTGCAAAACACACGCATTTCGCGAAAAAAGTGGGCGGAGCATCGGGCGCACATTAAAGAAAATTTGCTTTCGTGTCGAGACCCATCGGCATAATTGCATGTTCCTTTAATCGCGAATTGCACAACAAGAAAGAAAATTTTGCAAAACGTCAAGGTTTTTCTCCCATCCTCGCCCACCCCTGAGCGAAAGCATAAAATTTTATTTTCTCAAAATTTTACCAAATTCTTGTAACAGCATGAAAAGTTATTACCTTTCCAATGCCAAAAACCTATAAATAAAATGAATGGCTATTCCATACACCGTAACTGCTATGAATCCACATAGGAGGTCTGAAATTGTGATAATTTGTTTTTAGTAGAGCACATTTGCAAACCTATGAAGAATTCAGCCACAGAAGGAGTTAAGTGCCGACTTTTAACATCGACAACCATGAAAAACGCACTTTTGTAGGTTTGAATGTTCTGGAATTTTAATTTTCACACTTCTGAAAAACCCGCTTTAAAATCGGGCTAGCAAGAAAAAAATTGTTGCCCCAAGTACTACACAAAAAGCGAAGAAAAAATAGCATCTAGTGGATTTGAACCCGGGTAGTCAGTTTCGTAGCCGGGGTGGTTACCAGTTGCGCCAAATGAGCGCAAATCGCGGCGAGTAGCTGTTACTTGCTCACCGGTTGAACGACCGCATCGATCAAAGAAAACAAAAGTGAGCAACAACAAAAATAGGTCATCAAATGGCGATAGGTACCCATAATTTTTGGGGATTCAGTGATAATCAGGTAGATGGATACGGTATTCACAAATGCTGATAAAATCACGGAACAAATTTGAATGGTGGTTTTGACATTGGCGAATGT</canonical>
            <polymorphic>ATTTGGAACAACTTTTCTCATTTTACCAAATTCTTGCAACAGCAAAAAAAGTTATTCAACTAAGGACTTTTCCCAATCATCTAAAAATTTTGAAACCGTACAGCGAAAGCAGGGCTGGGCGAGCAATCGGCTTTCGCGGGAAACAGATTGCAAAACACACGCATTTCGCGAAAAAAGTGGGCGGAGCATCGGGCGCACATTAAAGAAAATTTGCTTTCGTGTCGAGACCCATCGGCATAATTGCATGTTCCTTTAATCGCGAATTGCACAACAAGAAAGAAAATTTTGCAAAACGTCAAGGTTTTTCTCCCATCCTCGCCCACCCCTGAGCGAAAGCATAAAATTTTATTTTCTCAAAATTTTACCAAATTCTTGTAACAGCATGAAAAGTTATTACCTTTCCAATGCCAAAAACCTATAAATAAAATGAATGGCTATTCCATACACCGTAACTGCTATGAATCCACATAGGAGGTCTGAAATTGTGATAATTTGTTTTYAGTAGAGCACATTTGCAAACCTATGAAGAATTCAGCCACAGAAGGAGTTAAGTGCCGACTTTTAACATCGACAACCATGAAAAACGCACTTTTGTAGGTTTGAATGTTCTGGAATTTTAATTTTCACACTTCTGAAAAACCCGCTTTAAAATCGGGCTAGCAAGAAAAAAATTGTTGCCCCAAGTACTACACAAAAAGCGAAGAAAAAATAGCATCTAGTGGATTTGAACCCGGGTAGTCAGTTTCGTAGCCGGGGTGGTTACCAGTTGCGCCAAATGAGCGCAAATCGCGGCGAGTAGCTGTTACTTGCTCACCGGTTGAACGACCGCATCGATCAAAGAAAACAAAAGTGAGCAACAACAAAAATAGGTCATCAAATGGCGATAGGTACCCATAATTTTTGGGGATTCAGTGATAATCAGGTAGATGGATACGGTATTCACAAATGCTGATAAAATCACGGAACAAATTTGAATGGTGGTTTTGACATTGGCGAATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTGTAACAGCATGAAAAGTTA</pcr_primer_p1>
		<pcr_primer_p2>TTAAAATTCCAGAACATTCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTGTAACAGCATGAAAAGTTATTACCTTTCCAATGCCAAAAACCTATAAATAAAATGAATGGCTATTCCATACACCGTAACTGCTATGAATCCACATAGGAGGTCTGAAATTGTGATAATTTGTTTTTAGTAGAGCACATTTGCAAACCTATGAAGAATTCAGCCACAGAAGGAGTTAAGTGCCGACTTTTAACATCGACAACCATGAAAAACGCACTTTTGTAGGTTTGAATGTTCTGGAATTTTAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTGTAACAGCATGAAAAGTTATTACCTTTCCAATGCCAAAAACCTATAAATAAAATGAATGGCTATTCCATACACCGTAACTGCTATGAATCCACATAGGAGGTCTGAAATTGTGATAATTTGTTTTYAGTAGAGCACATTTGCAAACCTATGAAGAATTCAGCCACAGAAGGAGTTAAGTGCCGACTTTTAACATCGACAACCATGAAAAACGCACTTTTGTAGGTTTGAATGTTCTGGAATTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35709</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>45443</contig_pos>
        <strand></strand>
        <context>TGAAGTTTGG[T/C]TGAAAATGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATGGTGGTTTTGACATTGGCGAATGTTTCGATTTGCATTTGAAGTTTGG</left_flank>
        <right_flank>TGAAAATGTAACTTTCACTAAAATGGAACATTGAACTTAAAATTGTTTTT</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGAATTCAGCCACAGAAGGAGTTAAGTGCCGACTTTTAACATCGACAACCATGAAAAACGCACTTTTGTAGGTTTGAATGTTCTGGAATTTTAATTTTCACACTTCTGAAAAACCCGCTTTAAAATCGGGCTAGCAAGAAAAAAATTGTTGCCCCAAGTACTACACAAAAAGCGAAGAAAAAATAGCATCTAGTGGATTTGAACCCGGGTAGTCAGTTTCGTAGCCGGGGTGGTTACCAGTTGCGCCAAATGAGCGCAAATCGCGGCGAGTAGCTGTTACTTGCTCACCGGTTGAACGACCGCATCGATCAAAGAAAACAAAAGTGAGCAACAACAAAAATAGGTCATCAAATGGCGATAGGTACCCATAATTTTTGGGGATTCAGTGATAATCAGGTAGATGGATACGGTATTCACAAATGCTGATAAAATCACGGAACAAATTTGAATGGTGGTTTTGACATTGGCGAATGTTTCGATTTGCATTTGAAGTTTGGTTGAAAATGTAACTTTCACTAAAATGGAACATTGAACTTAAAATTGTTTTTTATTAAATGTTATTCCTATAACAGTAATACTATGTAAGCATTAAAATAGATGTTTGGTTTCACAGTAGGACATTTCTAGAAAAAAATAAATAAGAAAAAACGAATAACAGGAAGAAGACAACGGAAGTTAGACGAAAAAAAAGTAATTAAATTTACCGATTCAGAGAATTCACAAAACATACAGTAGTACGAAGCTAGTTGCTTTACAGTGGAATCTATAGAATACTGTAGATGTGTATACAAAATCAGAGATTTAAAAAGTAAATAAGATTGAAAAATTCCGAAATATAATTCAATAAAAATATGAAGTTTACAAGATTCACCCATGCTGAAGATCAGTAAATTTTGTTTGGCTGATGATGTGTGACTCAATATATTTTTTCAAGCCAGAAATTTTTCATGCTTGAATTGATAAGGCTAGTGATAAGGTGAAGGGATATATGAAACGAA</canonical>
            <polymorphic>GAAGAATTCAGCCACAGAAGGAGTTAAGTGCCGACTTTTAACATCGACAACCATGAAAAACGCACTTTTGTAGGTTTGAATGTTCTGGAATTTTAATTTTCACACTTCTGAAAAACCCGCTTTAAAATCGGGCTAGCAAGAAAAAAATTGTTGCCCCAAGTACTACACAAAAAGCGAAGAAAAAATAGCATCTAGTGGATTTGAACCCGGGTAGTCAGTTTCGTAGCCGGGGTGGTTACCAGTTGCGCCAAATGAGCGCAAATCGCGGCGAGTAGCTGTTACTTGCTCACCGGTTGAACGACCGCATCGATCAAAGAAAACAAAAGTGAGCAACAACAAAAATAGGTCATCAAATGGCGATAGGTACCCATAATTTTTGGGGATTCAGTGATAATCAGGTAGATGGATACGGTATTCACAAATGCTGATAAAATCACGGAACAAATTTGAATGGTGGTTTTGACATTGGCGAATGTTTCGATTTGCATTTGAAGTTTGGYTGAAAATGTAACTTTCACTAAAATGGAACATTGAACTTAAAATTGTTTTTTATTAAATGTTATTCCTATAACAGTAATACTATGTAAGCATTAAAATAGATGTTTGGTTTCACAGTAGGACATTTCTAGAAAAAAATAAATAAGAAAAAACGAATAACAGGAAGAAGACAACGGAAGTTAGACGAAAAAAAAGTAATTAAATTTACCGATTCAGAGAATTCACAAAACATACAGTAGTACGAAGCTAGTTGCTTTACAGTGGAATCTATAGAATACTGTAGATGTGTATACAAAATCAGAGATTTAAAAAGTAAATAAGATTGAAAAATTCCGAAATATAATTCAATAAAAATATGAAGTTTACAAGATTCACCCATGCTGAAGATCAGTAAATTTTGTTTGGCTGATGATGTGTGACTCAATATATTTTTTCAAGCCAGAAATTTTTCATGCTTGAATTGATAAGGCTAGTGATAAGGTGAAGGGATATATGAAACGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATAATCAGGTAGATGGATACG</pcr_primer_p1>
		<pcr_primer_p2>TTCTAGAAATGTCCTACTGTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TGATAATCAGGTAGATGGATACGGTATTCACAAATGCTGATAAAATCACGGAACAAATTTGAATGGTGGTTTTGACATTGGCGAATGTTTCGATTTGCATTTGAAGTTTGGTTGAAAATGTAACTTTCACTAAAATGGAACATTGAACTTAAAATTGTTTTTTATTAAATGTTATTCCTATAACAGTAATACTATGTAAGCATTAAAATAGATGTTTGGTTTCACAGTAGGACATTTCTAGAA</canonical_amplicon>
		<polymorphic_amplicon>TGATAATCAGGTAGATGGATACGGTATTCACAAATGCTGATAAAATCACGGAACAAATTTGAATGGTGGTTTTGACATTGGCGAATGTTTCGATTTGCATTTGAAGTTTGGYTGAAAATGTAACTTTCACTAAAATGGAACATTGAACTTAAAATTGTTTTTTATTAAATGTTATTCCTATAACAGTAATACTATGTAAGCATTAAAATAGATGTTTGGTTTCACAGTAGGACATTTCTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35710</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>48090</contig_pos>
        <strand>+</strand>
        <context>AACCACGCGG[C/T]TCCGCCCACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCATTTTGGTCTTTGGAAAAACGTAGGCGGTCACTAGGAACCACGCGG</left_flank>
        <right_flank>TCCGCCCACCAGAGGAATCGAAAACCAAAAAATGAGAAATGCGCCTTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAATTCTTAGCAAATTCTGAATCTCCTTGTTCCAATAACCCTCCAACTATTCTCCAACTTTTGAATCCAAAACTCAAAATAATGGAAAATGGAATAATCATAATTGTTAAATATCCAGCAAATCCGGCAAACGACCACCATCCAATTACTTGTTTTCCATTTTCATCAAGAGGGAAAAATACGCCTGCATTGTAAGCACAATTGTCAATATCCATGTTGAACGTTTCGTTTACTATTGATCTATGGAAAATCGATTTTTAAAGTCAGGATTCCAACGATGAAAGATCAATCATGTAGTTTTGTGAATTTCTAATTTGAAACCGAAATATTTTTTTTTTGAAAAAAAACTTCAATTAAAGGCCAATTCAAATACAAGGCTACGAACAATGGGGCAGCCAAGGCCAGCCGCGGCCAAAAAATAGCAAAAAGCTCACCTTATATACTCTGTTTCCATTTTGGTCTTTGGAAAAACGTAGGCGGTCACTAGGAACCACGCGGCTCCGCCCACCAGAGGAATCGAAAACCAAAAAATGAGAAATGCGCCTTTAAAGTATCGAATTCGGCCTTGTCTGAAAAAATCAACATTAAAATCTCAGAATTTCAGAATCCTAAAGTTTCAGATTCTTGGATTTTCAGAATCTCAGAATCTCAGAAGTTTAGAACCTCCTACCTCTCCAAAGCAAAAGATCGATAAACAAAATGAATTGCAATTCCATAAATTGCTATTCCAAAACTTCCACATAACGCATCTAAAAATTCAAAATTTGATTAATTAAGTTGAAAATTTCAAAAACTTACAAACTGCAAATTTCCCAAACCAAGGCGCAAAATTCCTTCTTTTCATATCCACAACCATGAAAAATGCACTTTTGTAGGTTAGGATATTCTGGAAAATCCCTATTAATTACTTAATTACACAAATTAAAATTACCGGCTGCACAATCACATCCAAAATTCCAAAAATCATGGAACAACAGCAAAAATAAACCATAAGATGGC</canonical>
            <polymorphic>CAAATTCTTAGCAAATTCTGAATCTCCTTGTTCCAATAACCCTCCAACTATTCTCCAACTTTTGAATCCAAAACTCAAAATAATGGAAAATGGAATAATCATAATTGTTAAATATCCAGCAAATCCGGCAAACGACCACCATCCAATTACTTGTTTTCCATTTTCATCAAGAGGGAAAAATACGCCTGCATTGTAAGCACAATTGTCAATATCCATGTTGAACGTTTCGTTTACTATTGATCTATGGAAAATCGATTTTTAAAGTCAGGATTCCAACGATGAAAGATCAATCATGTAGTTTTGTGAATTTCTAATTTGAAACCGAAATATTTTTTTTTTGAAAAAAAACTTCAATTAAAGGCCAATTCAAATACAAGGCTACGAACAATGGGGCAGCCAAGGCCAGCCGCGGCCAAAAAATAGCAAAAAGCTCACCTTATATACTCTGTTTCCATTTTGGTCTTTGGAAAAACGTAGGCGGTCACTAGGAACCACGCGGYTCCGCCCACCAGAGGAATCGAAAACCAAAAAATGAGAAATGCGCCTTTAAAGTATCGAATTCGGCCTTGTCTGAAAAAATCAACATTAAAATCTCAGAATTTCAGAATCCTAAAGTTTCAGATTCTTGGATTTTCAGAATCTCAGAATCTCAGAAGTTTAGAACCTCCTACCTCTCCAAAGCAAAAGATCGATAAACAAAATGAATTGCAATTCCATAAATTGCTATTCCAAAACTTCCACATAACGCATCTAAAAATTCAAAATTTGATTAATTAAGTTGAAAATTTCAAAAACTTACAAACTGCAAATTTCCCAAACCAAGGCGCAAAATTCCTTCTTTTCATATCCACAACCATGAAAAATGCACTTTTGTAGGTTAGGATATTCTGGAAAATCCCTATTAATTACTTAATTACACAAATTAAAATTACCGGCTGCACAATCACATCCAAAATTCCAAAAATCATGGAACAACAGCAAAAATAAACCATAAGATGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>439 396 90 62 13</canonical_bands>
                <polymorphic_bands>529 396 62 13</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>371 361 69 65 65 18 18 17 6 6 4</canonical_bands>
                <polymorphic_bands>371 361 134 65 18 18 17 6 6 4</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>501 409 90</canonical_bands>
                <polymorphic_bands>591 409</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAATCATGTAGTTTTGTGAATTT</pcr_primer_p1>
		<pcr_primer_p2>ACTTTAAAGGCGCATTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>TCAATCATGTAGTTTTGTGAATTTCTAATTTGAAACCGAAATATTTTTTTTTTGAAAAAAAACTTCAATTAAAGGCCAATTCAAATACAAGGCTACGAACAATGGGGCAGCCAAGGCCAGCCGCGGCCAAAAAATAGCAAAAAGCTCACCTTATATACTCTGTTTCCATTTTGGTCTTTGGAAAAACGTAGGCGGTCACTAGGAACCACGCGGCTCCGCCCACCAGAGGAATCGAAAACCAAAAAATGAGAAATGCGCCTTTAAAGT</canonical_amplicon>
		<polymorphic_amplicon>TCAATCATGTAGTTTTGTGAATTTCTAATTTGAAACCGAAATATTTTTTTTTTGAAAAAAAACTTCAATTAAAGGCCAATTCAAATACAAGGCTACGAACAATGGGGCAGCCAAGGCCAGCCGCGGCCAAAAAATAGCAAAAAGCTCACCTTATATACTCTGTTTCCATTTTGGTCTTTGGAAAAACGTAGGCGGTCACTAGGAACCACGCGGYTCCGCCCACCAGAGGAATCGAAAACCAAAAAATGAGAAATGCGCCTTTAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35711</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>48260</contig_pos>
        <strand>+</strand>
        <context>agaacctcct[A/G]CCTCTCCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGATTCTTGGATTTTCAGAATCTCAGAATCTCAGAAGTTTAGAACCTCCT</left_flank>
        <right_flank>CCTCTCCAAAGCAAAAGATCGATAAACAAAATGAATTGCAATTCCATAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGGAAAAATACGCCTGCATTGTAAGCACAATTGTCAATATCCATGTTGAACGTTTCGTTTACTATTGATCTATGGAAAATCGATTTTTAAAGTCAGGATTCCAACGATGAAAGATCAATCATGTAGTTTTGTGAATTTCTAATTTGAAACCGAAATATTTTTTTTTTGAAAAAAAACTTCAATTAAAGGCCAATTCAAATACAAGGCTACGAACAATGGGGCAGCCAAGGCCAGCCGCGGCCAAAAAATAGCAAAAAGCTCACCTTATATACTCTGTTTCCATTTTGGTCTTTGGAAAAACGTAGGCGGTCACTAGGAACCACGCGGCTCCGCCCACCAGAGGAATCGAAAACCAAAAAATGAGAAATGCGCCTTTAAAGTATCGAATTCGGCCTTGTCTGAAAAAATCAACATTAAAATCTCAGAATTTCAGAATCCTAAAGTTTCAGATTCTTGGATTTTCAGAATCTCAGAATCTCAGAAGTTTAGAACCTCCTACCTCTCCAAAGCAAAAGATCGATAAACAAAATGAATTGCAATTCCATAAATTGCTATTCCAAAACTTCCACATAACGCATCTAAAAATTCAAAATTTGATTAATTAAGTTGAAAATTTCAAAAACTTACAAACTGCAAATTTCCCAAACCAAGGCGCAAAATTCCTTCTTTTCATATCCACAACCATGAAAAATGCACTTTTGTAGGTTAGGATATTCTGGAAAATCCCTATTAATTACTTAATTACACAAATTAAAATTACCGGCTGCACAATCACATCCAAAATTCCAAAAATCATGGAACAACAGCAAAAATAAACCATAAGATGGCGGTAATTTCCCATATTTTTTGGAGACTTTGTGATAATGAGGGTGATTAAGAGGGAGTTAATTAATAGGGAAGCAATTACAGATATCACTTGGATTGCGAGTTTCACGAGACGATAAGATTCGGTATTCATTTTTCGGTCTTTTTTTTCTGCGCCACAAAAACTTTTCGAA</canonical>
            <polymorphic>GAGGGAAAAATACGCCTGCATTGTAAGCACAATTGTCAATATCCATGTTGAACGTTTCGTTTACTATTGATCTATGGAAAATCGATTTTTAAAGTCAGGATTCCAACGATGAAAGATCAATCATGTAGTTTTGTGAATTTCTAATTTGAAACCGAAATATTTTTTTTTTGAAAAAAAACTTCAATTAAAGGCCAATTCAAATACAAGGCTACGAACAATGGGGCAGCCAAGGCCAGCCGCGGCCAAAAAATAGCAAAAAGCTCACCTTATATACTCTGTTTCCATTTTGGTCTTTGGAAAAACGTAGGCGGTCACTAGGAACCACGCGGCTCCGCCCACCAGAGGAATCGAAAACCAAAAAATGAGAAATGCGCCTTTAAAGTATCGAATTCGGCCTTGTCTGAAAAAATCAACATTAAAATCTCAGAATTTCAGAATCCTAAAGTTTCAGATTCTTGGATTTTCAGAATCTCAGAATCTCAGAAGTTTAGAACCTCCTRCCTCTCCAAAGCAAAAGATCGATAAACAAAATGAATTGCAATTCCATAAATTGCTATTCCAAAACTTCCACATAACGCATCTAAAAATTCAAAATTTGATTAATTAAGTTGAAAATTTCAAAAACTTACAAACTGCAAATTTCCCAAACCAAGGCGCAAAATTCCTTCTTTTCATATCCACAACCATGAAAAATGCACTTTTGTAGGTTAGGATATTCTGGAAAATCCCTATTAATTACTTAATTACACAAATTAAAATTACCGGCTGCACAATCACATCCAAAATTCCAAAAATCATGGAACAACAGCAAAAATAAACCATAAGATGGCGGTAATTTCCCATATTTTTTGGAGACTTTGTGATAATGAGGGTGATTAAGAGGGAGTTAATTAATAGGGAAGCAATTACAGATATCACTTGGATTGCGAGTTTCACGAGACGATAAGATTCGGTATTCATTTTTCGGTCTTTTTTTTCTGCGCCACAAAAACTTTTCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAATGCGCCTTTAAAGTAT</pcr_primer_p1>
		<pcr_primer_p2>TTGAATTTTTAGATGCGTTATG</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>AGAAATGCGCCTTTAAAGTATCGAATTCGGCCTTGTCTGAAAAAATCAACATTAAAATCTCAGAATTTCAGAATCCTAAAGTTTCAGATTCTTGGATTTTCAGAATCTCAGAATCTCAGAAGTTTAGAACCTCCTACCTCTCCAAAGCAAAAGATCGATAAACAAAATGAATTGCAATTCCATAAATTGCTATTCCAAAACTTCCACATAACGCATCTAAAAATTCAA</canonical_amplicon>
		<polymorphic_amplicon>AGAAATGCGCCTTTAAAGTATCGAATTCGGCCTTGTCTGAAAAAATCAACATTAAAATCTCAGAATTTCAGAATCCTAAAGTTTCAGATTCTTGGATTTTCAGAATCTCAGAATCTCAGAAGTTTAGAACCTCCTRCCTCTCCAAAGCAAAAGATCGATAAACAAAATGAATTGCAATTCCATAAATTGCTATTCCAAAACTTCCACATAACGCATCTAAAAATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35712</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>110192</contig_pos>
        <strand></strand>
        <context>GGATCACTTT[C/T]CCATGACCCY</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAATGACTGTTTTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTT</left_flank>
        <right_flank>CCATGACCCTAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCAACTGCCAGGTATTCAAATTGTTCCGTAAATATTTTTGGGGTCAATGGTACTTCTTTCAGGACCTCGATTCGCCCGACCCGGAAGGCCCGGTGTTTAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTTTCCATTTTTTTCGTATTTCGGATTGTTTGTCTGTCTGATCAAAAAAGATCGAAAAACTCAAAAAAAAAAAGTTTTGGTCGAAAAAAATCACATAAGGGTCCCCCTTATGTGTTTTTTGAAAATTTCGAAACTAGTGTGTTCTGGGCTCTATTACTAGTTACAGTATCCCTGTATTCCTTGATATCCTCCTCTGTGGCCTTGTGAATCGCTTTCAAGTGGGCAACAACATTCGATGTTCGTTCGGAAACATAGTTGCATTTGGGACAACAGTATTGCTTCACCATATTTGTGGTAAAAAAGGGTGAAATGACTGTTTTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTCCCATGACCCTAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTTCAAAAAAACATTCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCCAGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCAAGGGTTTCACATTTGAATTTCAGATTTCTGGACGACTTCGATTACCCCTGCAACTACGAAATCTCTT</canonical>
            <polymorphic>GTCAACTGCCAGGTATTCAAATTGTTCCGTAAATATTTTTGGGGTCAATGGTACTTCTTTCAGGACCTCGATTCGCCCGACCCGGAAGGCCCGGTGTTTAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTTTCCATTTTTTTCGTATTTCGGATTGTTTGTCTGTCTGATCAAAAAAGATCGAAAAACTCAAAAAAAAAAAGTTTTGGTCGAAAAAAATCACATAAGGGTCCCCCTTATGTGTTTTTTGAAAATTTCGAAACTAGTGTGTTCTGGGCTCTATTACTAGTTACAGTATCCCTGTATTCCTTGATATCCTCCTCTGTGGCCTTGTGAATCGCTTTCAAGTGGGCAACAACATTCGATGTTCGTTCGGAAACATAGTTGCATTTGGGACAACAGTATTGCTTCACCATATTTGTGGTAAAAAAGGGTGAAATGACTGTTTTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTYCCATGACCCTAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTTCAAAAAAACATTCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCCAGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCAAGGGTTTCACATTTGAATTTCAGATTTCTGGACGACTTCGATTACCCCTGCAACTACGAAATCTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTATTCCTTGATATCCTCCTC</pcr_primer_p1>
		<pcr_primer_p2>TTGAAATTTGAATTTTTGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTGTATTCCTTGATATCCTCCTCTGTGGCCTTGTGAATCGCTTTCAAGTGGGCAACAACATTCGATGTTCGTTCGGAAACATAGTTGCATTTGGGACAACAGTATTGCTTCACCATATTTGTGGTAAAAAAGGGTGAAATGACTGTTTTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTCCCATGACCCTAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTTCAA</canonical_amplicon>
		<polymorphic_amplicon>CTGTATTCCTTGATATCCTCCTCTGTGGCCTTGTGAATCGCTTTCAAGTGGGCAACAACATTCGATGTTCGTTCGGAAACATAGTTGCATTTGGGACAACAGTATTGCTTCACCATATTTGTGGTAAAAAAGGGTGAAATGACTGTTTTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTYCCATGACCCTAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35713</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>110202</contig_pos>
        <strand></strand>
        <context>YCCATGACCC[T/C]AGCTTGGGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTTTTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTCCCATGACCC</left_flank>
        <right_flank>AGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGTATTCAAATTGTTCCGTAAATATTTTTGGGGTCAATGGTACTTCTTTCAGGACCTCGATTCGCCCGACCCGGAAGGCCCGGTGTTTAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTTTCCATTTTTTTCGTATTTCGGATTGTTTGTCTGTCTGATCAAAAAAGATCGAAAAACTCAAAAAAAAAAAGTTTTGGTCGAAAAAAATCACATAAGGGTCCCCCTTATGTGTTTTTTGAAAATTTCGAAACTAGTGTGTTCTGGGCTCTATTACTAGTTACAGTATCCCTGTATTCCTTGATATCCTCCTCTGTGGCCTTGTGAATCGCTTTCAAGTGGGCAACAACATTCGATGTTCGTTCGGAAACATAGTTGCATTTGGGACAACAGTATTGCTTCACCATATTTGTGGTAAAAAAGGGTGAAATGACTGTTTTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTCCCATGACCCTAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTTCAAAAAAACATTCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCCAGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCAAGGGTTTCACATTTGAATTTCAGATTTCTGGACGACTTCGATTACCCCTGCAACTACGAAATCTCTTCTAATCTTCA</canonical>
            <polymorphic>AGGTATTCAAATTGTTCCGTAAATATTTTTGGGGTCAATGGTACTTCTTTCAGGACCTCGATTCGCCCGACCCGGAAGGCCCGGTGTTTAAAATTCTGTATTTTTGAGCCAAATTTTGAGCTCTCAATATAATTTTTTCCATTTTTTTCGTATTTCGGATTGTTTGTCTGTCTGATCAAAAAAGATCGAAAAACTCAAAAAAAAAAAGTTTTGGTCGAAAAAAATCACATAAGGGTCCCCCTTATGTGTTTTTTGAAAATTTCGAAACTAGTGTGTTCTGGGCTCTATTACTAGTTACAGTATCCCTGTATTCCTTGATATCCTCCTCTGTGGCCTTGTGAATCGCTTTCAAGTGGGCAACAACATTCGATGTTCGTTCGGAAACATAGTTGCATTTGGGACAACAGTATTGCTTCACCATATTTGTGGTAAAAAAGGGTGAAATGACTGTTTTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTCCCATGACCCYAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTTCAAAAAAACATTCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCCAGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCAAGGGTTTCACATTTGAATTTCAGATTTCTGGACGACTTCGATTACCCCTGCAACTACGAAATCTCTTCTAATCTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>324 268 208 177 23</canonical_bands>
                <polymorphic_bands>532 268 177 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTTTTTCAGCCTTTTATAGTG</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAGACTGTAGATGTGGACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTGTTTTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTCCCATGACCCTAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTTCAAAAAAACATTCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCCAGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>CTGTTTTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTCCCATGACCCYAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTTCAAAAAAACATTCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCCAGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35714</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>110341</contig_pos>
        <strand></strand>
        <context>CATTAATCAT[C/T]ATTTTTATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCAT</left_flank>
        <right_flank>ATTTTTATTCCAGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTTTTTCGTATTTCGGATTGTTTGTCTGTCTGATCAAAAAAGATCGAAAAACTCAAAAAAAAAAAGTTTTGGTCGAAAAAAATCACATAAGGGTCCCCCTTATGTGTTTTTTGAAAATTTCGAAACTAGTGTGTTCTGGGCTCTATTACTAGTTACAGTATCCCTGTATTCCTTGATATCCTCCTCTGTGGCCTTGTGAATCGCTTTCAAGTGGGCAACAACATTCGATGTTCGTTCGGAAACATAGTTGCATTTGGGACAACAGTATTGCTTCACCATATTTGTGGTAAAAAAGGGTGAAATGACTGTTTTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTCCCATGACCCTAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTTCAAAAAAACATTCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCCAGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCAAGGGTTTCACATTTGAATTTCAGATTTCTGGACGACTTCGATTACCCCTGCAACTACGAAATCTCTTCTAATCTTCAATTTTTCATAATTGTTATAACTTTTTACATAAATTAAAATGTTTAAAAATATAGTATTTATTGCAATAAAATTCAAAAAATAAATTTTTTTAAAGATGGAATATTTCGAAAAGTTGTCGTTTCCTCTCCGGAAGATCCA</canonical>
            <polymorphic>CATTTTTTTCGTATTTCGGATTGTTTGTCTGTCTGATCAAAAAAGATCGAAAAACTCAAAAAAAAAAAGTTTTGGTCGAAAAAAATCACATAAGGGTCCCCCTTATGTGTTTTTTGAAAATTTCGAAACTAGTGTGTTCTGGGCTCTATTACTAGTTACAGTATCCCTGTATTCCTTGATATCCTCCTCTGTGGCCTTGTGAATCGCTTTCAAGTGGGCAACAACATTCGATGTTCGTTCGGAAACATAGTTGCATTTGGGACAACAGTATTGCTTCACCATATTTGTGGTAAAAAAGGGTGAAATGACTGTTTTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTCCCATGACCCTAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTTCAAAAAAACATTCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATYATTTTTATTCCAGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCAAGGGTTTCACATTTGAATTTCAGATTTCTGGACGACTTCGATTACCCCTGCAACTACGAAATCTCTTCTAATCTTCAATTTTTCATAATTGTTATAACTTTTTACATAAATTAAAATGTTTAAAAATATAGTATTTATTGCAATAAAATTCAAAAAATAAATTTTTTTAAAGATGGAATATTTCGAAAAGTTGTCGTTTCCTCTCCGGAAGATCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTTTTTCAGCCTTTTATAGTG</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAGACTGTAGATGTGGACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTGTTTTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTCCCATGACCCTAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTTCAAAAAAACATTCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCCAGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>CTGTTTTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTCCCATGACCCTAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTTCAAAAAAACATTCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATYATTTTTATTCCAGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35715</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>110353</contig_pos>
        <strand></strand>
        <context>TTTTTATTCC[A/G]GATCTACAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCC</left_flank>
        <right_flank>GATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTGGCAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCGGATTGTTTGTCTGTCTGATCAAAAAAGATCGAAAAACTCAAAAAAAAAAAGTTTTGGTCGAAAAAAATCACATAAGGGTCCCCCTTATGTGTTTTTTGAAAATTTCGAAACTAGTGTGTTCTGGGCTCTATTACTAGTTACAGTATCCCTGTATTCCTTGATATCCTCCTCTGTGGCCTTGTGAATCGCTTTCAAGTGGGCAACAACATTCGATGTTCGTTCGGAAACATAGTTGCATTTGGGACAACAGTATTGCTTCACCATATTTGTGGTAAAAAAGGGTGAAATGACTGTTTTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTCCCATGACCCTAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTTCAAAAAAACATTCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCCAGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCAAGGGTTTCACATTTGAATTTCAGATTTCTGGACGACTTCGATTACCCCTGCAACTACGAAATCTCTTCTAATCTTCAATTTTTCATAATTGTTATAACTTTTTACATAAATTAAAATGTTTAAAAATATAGTATTTATTGCAATAAAATTCAAAAAATAAATTTTTTTAAAGATGGAATATTTCGAAAAGTTGTCGTTTCCTCTCCGGAAGATCCAAGTCCACCGAAT</canonical>
            <polymorphic>ATTTCGGATTGTTTGTCTGTCTGATCAAAAAAGATCGAAAAACTCAAAAAAAAAAAGTTTTGGTCGAAAAAAATCACATAAGGGTCCCCCTTATGTGTTTTTTGAAAATTTCGAAACTAGTGTGTTCTGGGCTCTATTACTAGTTACAGTATCCCTGTATTCCTTGATATCCTCCTCTGTGGCCTTGTGAATCGCTTTCAAGTGGGCAACAACATTCGATGTTCGTTCGGAAACATAGTTGCATTTGGGACAACAGTATTGCTTCACCATATTTGTGGTAAAAAAGGGTGAAATGACTGTTTTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTCCCATGACCCTAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTTCAAAAAAACATTCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCCRGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCAAGGGTTTCACATTTGAATTTCAGATTTCTGGACGACTTCGATTACCCCTGCAACTACGAAATCTCTTCTAATCTTCAATTTTTCATAATTGTTATAACTTTTTACATAAATTAAAATGTTTAAAAATATAGTATTTATTGCAATAAAATTCAAAAAATAAATTTTTTTAAAGATGGAATATTTCGAAAAGTTGTCGTTTCCTCTCCGGAAGATCCAAGTCCACCGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>500 350 150</canonical_bands>
                <polymorphic_bands>650 350</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>500 332 150 18</canonical_bands>
                <polymorphic_bands>650 332 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCCACCCTCTAAATCTTACTAT</pcr_primer_p1>
		<pcr_primer_p2>AGGAAGGATGAAGATCTGTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCCAGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCT</canonical_amplicon>
		<polymorphic_amplicon>TCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCCRGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35716</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>110375</contig_pos>
        <strand></strand>
        <context>CTCTTGGTAC[C/T]AGTCCACATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCTCCATTAATCATCATTTTTATTCCAGATCTACAGCCCTCTTGGTAC</left_flank>
        <right_flank>AGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATCAAAAAAGATCGAAAAACTCAAAAAAAAAAAGTTTTGGTCGAAAAAAATCACATAAGGGTCCCCCTTATGTGTTTTTTGAAAATTTCGAAACTAGTGTGTTCTGGGCTCTATTACTAGTTACAGTATCCCTGTATTCCTTGATATCCTCCTCTGTGGCCTTGTGAATCGCTTTCAAGTGGGCAACAACATTCGATGTTCGTTCGGAAACATAGTTGCATTTGGGACAACAGTATTGCTTCACCATATTTGTGGTAAAAAAGGGTGAAATGACTGTTTTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTCCCATGACCCTAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTTCAAAAAAACATTCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCCAGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCAAGGGTTTCACATTTGAATTTCAGATTTCTGGACGACTTCGATTACCCCTGCAACTACGAAATCTCTTCTAATCTTCAATTTTTCATAATTGTTATAACTTTTTACATAAATTAAAATGTTTAAAAATATAGTATTTATTGCAATAAAATTCAAAAAATAAATTTTTTTAAAGATGGAATATTTCGAAAAGTTGTCGTTTCCTCTCCGGAAGATCCAAGTCCACCGAATCCTGGGAATCGAGGTCCTGAAA</canonical>
            <polymorphic>GATCAAAAAAGATCGAAAAACTCAAAAAAAAAAAGTTTTGGTCGAAAAAAATCACATAAGGGTCCCCCTTATGTGTTTTTTGAAAATTTCGAAACTAGTGTGTTCTGGGCTCTATTACTAGTTACAGTATCCCTGTATTCCTTGATATCCTCCTCTGTGGCCTTGTGAATCGCTTTCAAGTGGGCAACAACATTCGATGTTCGTTCGGAAACATAGTTGCATTTGGGACAACAGTATTGCTTCACCATATTTGTGGTAAAAAAGGGTGAAATGACTGTTTTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTCCCATGACCCTAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTTCAAAAAAACATTCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCCAGATCTACAGCCCTCTTGGTACYAGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCAAGGGTTTCACATTTGAATTTCAGATTTCTGGACGACTTCGATTACCCCTGCAACTACGAAATCTCTTCTAATCTTCAATTTTTCATAATTGTTATAACTTTTTACATAAATTAAAATGTTTAAAAATATAGTATTTATTGCAATAAAATTCAAAAAATAAATTTTTTTAAAGATGGAATATTTCGAAAAGTTGTCGTTTCCTCTCCGGAAGATCCAAGTCCACCGAATCCTGGGAATCGAGGTCCTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGTACC</site>
                <isoschizomers>
                    <enzyme>Acc65I</enzyme>
                    <enzyme>Asp718I</enzyme>
                    <enzyme>KpnI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>503 237 198 62</canonical_bands>
                <polymorphic_bands>701 237 62</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCCACCCTCTAAATCTTACTAT</pcr_primer_p1>
		<pcr_primer_p2>AGGAAGGATGAAGATCTGTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCCAGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCT</canonical_amplicon>
		<polymorphic_amplicon>TCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCCAGATCTACAGCCCTCTTGGTACYAGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35717</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>110430</contig_pos>
        <strand></strand>
        <context>CCCAAATCTG[T/C]TTTTTTTGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTG</left_flank>
        <right_flank>TTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAGGGTCCCCCTTATGTGTTTTTTGAAAATTTCGAAACTAGTGTGTTCTGGGCTCTATTACTAGTTACAGTATCCCTGTATTCCTTGATATCCTCCTCTGTGGCCTTGTGAATCGCTTTCAAGTGGGCAACAACATTCGATGTTCGTTCGGAAACATAGTTGCATTTGGGACAACAGTATTGCTTCACCATATTTGTGGTAAAAAAGGGTGAAATGACTGTTTTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTCCCATGACCCTAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTTCAAAAAAACATTCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCCAGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCAAGGGTTTCACATTTGAATTTCAGATTTCTGGACGACTTCGATTACCCCTGCAACTACGAAATCTCTTCTAATCTTCAATTTTTCATAATTGTTATAACTTTTTACATAAATTAAAATGTTTAAAAATATAGTATTTATTGCAATAAAATTCAAAAAATAAATTTTTTTAAAGATGGAATATTTCGAAAAGTTGTCGTTTCCTCTCCGGAAGATCCAAGTCCACCGAATCCTGGGAATCGAGGTCCTGAAACACGTCCCATTAACCCCAAAAATATTTACGGAACAATTTGAATACCTGGCAGTTG</canonical>
            <polymorphic>ATAAGGGTCCCCCTTATGTGTTTTTTGAAAATTTCGAAACTAGTGTGTTCTGGGCTCTATTACTAGTTACAGTATCCCTGTATTCCTTGATATCCTCCTCTGTGGCCTTGTGAATCGCTTTCAAGTGGGCAACAACATTCGATGTTCGTTCGGAAACATAGTTGCATTTGGGACAACAGTATTGCTTCACCATATTTGTGGTAAAAAAGGGTGAAATGACTGTTTTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTCCCATGACCCTAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTTCAAAAAAACATTCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCCAGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGYTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCAAGGGTTTCACATTTGAATTTCAGATTTCTGGACGACTTCGATTACCCCTGCAACTACGAAATCTCTTCTAATCTTCAATTTTTCATAATTGTTATAACTTTTTACATAAATTAAAATGTTTAAAAATATAGTATTTATTGCAATAAAATTCAAAAAATAAATTTTTTTAAAGATGGAATATTTCGAAAAGTTGTCGTTTCCTCTCCGGAAGATCCAAGTCCACCGAATCCTGGGAATCGAGGTCCTGAAACACGTCCCATTAACCCCAAAAATATTTACGGAACAATTTGAATACCTGGCAGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCCACATCTACAGTCTTCTTG</pcr_primer_p1>
		<pcr_primer_p2>TGGAATTGTAATTTTTACAGAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCA</canonical_amplicon>
		<polymorphic_amplicon>AGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGYTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35718</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>110461</contig_pos>
        <strand></strand>
        <context>TTGTATTGTT[C/T]CGTAAATTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTT</left_flank>
        <right_flank>CGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGAAACTAGTGTGTTCTGGGCTCTATTACTAGTTACAGTATCCCTGTATTCCTTGATATCCTCCTCTGTGGCCTTGTGAATCGCTTTCAAGTGGGCAACAACATTCGATGTTCGTTCGGAAACATAGTTGCATTTGGGACAACAGTATTGCTTCACCATATTTGTGGTAAAAAAGGGTGAAATGACTGTTTTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTCCCATGACCCTAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTTCAAAAAAACATTCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCCAGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCAAGGGTTTCACATTTGAATTTCAGATTTCTGGACGACTTCGATTACCCCTGCAACTACGAAATCTCTTCTAATCTTCAATTTTTCATAATTGTTATAACTTTTTACATAAATTAAAATGTTTAAAAATATAGTATTTATTGCAATAAAATTCAAAAAATAAATTTTTTTAAAGATGGAATATTTCGAAAAGTTGTCGTTTCCTCTCCGGAAGATCCAAGTCCACCGAATCCTGGGAATCGAGGTCCTGAAACACGTCCCATTAACCCCAAAAATATTTACGGAACAATTTGAATACCTGGCAGTTGACAGCTGACGATCCTTCCTCTTGCCTTGCTG</canonical>
            <polymorphic>TTTCGAAACTAGTGTGTTCTGGGCTCTATTACTAGTTACAGTATCCCTGTATTCCTTGATATCCTCCTCTGTGGCCTTGTGAATCGCTTTCAAGTGGGCAACAACATTCGATGTTCGTTCGGAAACATAGTTGCATTTGGGACAACAGTATTGCTTCACCATATTTGTGGTAAAAAAGGGTGAAATGACTGTTTTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTCCCATGACCCTAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTTCAAAAAAACATTCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCCAGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTYCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCAAGGGTTTCACATTTGAATTTCAGATTTCTGGACGACTTCGATTACCCCTGCAACTACGAAATCTCTTCTAATCTTCAATTTTTCATAATTGTTATAACTTTTTACATAAATTAAAATGTTTAAAAATATAGTATTTATTGCAATAAAATTCAAAAAATAAATTTTTTTAAAGATGGAATATTTCGAAAAGTTGTCGTTTCCTCTCCGGAAGATCCAAGTCCACCGAATCCTGGGAATCGAGGTCCTGAAACACGTCCCATTAACCCCAAAAATATTTACGGAACAATTTGAATACCTGGCAGTTGACAGCTGACGATCCTTCCTCTTGCCTTGCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCCACATCTACAGTCTTCTTG</pcr_primer_p1>
		<pcr_primer_p2>TGGAATTGTAATTTTTACAGAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCA</canonical_amplicon>
		<polymorphic_amplicon>AGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTYCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35719</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>110490</contig_pos>
        <strand></strand>
        <context>GTTTTGTTCA[G/A]TTCAAAATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCA</left_flank>
        <right_flank>TTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTAGTTACAGTATCCCTGTATTCCTTGATATCCTCCTCTGTGGCCTTGTGAATCGCTTTCAAGTGGGCAACAACATTCGATGTTCGTTCGGAAACATAGTTGCATTTGGGACAACAGTATTGCTTCACCATATTTGTGGTAAAAAAGGGTGAAATGACTGTTTTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTCCCATGACCCTAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTTCAAAAAAACATTCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCCAGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCAAGGGTTTCACATTTGAATTTCAGATTTCTGGACGACTTCGATTACCCCTGCAACTACGAAATCTCTTCTAATCTTCAATTTTTCATAATTGTTATAACTTTTTACATAAATTAAAATGTTTAAAAATATAGTATTTATTGCAATAAAATTCAAAAAATAAATTTTTTTAAAGATGGAATATTTCGAAAAGTTGTCGTTTCCTCTCCGGAAGATCCAAGTCCACCGAATCCTGGGAATCGAGGTCCTGAAACACGTCCCATTAACCCCAAAAATATTTACGGAACAATTTGAATACCTGGCAGTTGACAGCTGACGATCCTTCCTCTTGCCTTGCTGACTCCGCTTCGAAGTTTTCCCGGCTGAAA</canonical>
            <polymorphic>TACTAGTTACAGTATCCCTGTATTCCTTGATATCCTCCTCTGTGGCCTTGTGAATCGCTTTCAAGTGGGCAACAACATTCGATGTTCGTTCGGAAACATAGTTGCATTTGGGACAACAGTATTGCTTCACCATATTTGTGGTAAAAAAGGGTGAAATGACTGTTTTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTCCCATGACCCTAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTTCAAAAAAACATTCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCCAGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCARTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCAAGGGTTTCACATTTGAATTTCAGATTTCTGGACGACTTCGATTACCCCTGCAACTACGAAATCTCTTCTAATCTTCAATTTTTCATAATTGTTATAACTTTTTACATAAATTAAAATGTTTAAAAATATAGTATTTATTGCAATAAAATTCAAAAAATAAATTTTTTTAAAGATGGAATATTTCGAAAAGTTGTCGTTTCCTCTCCGGAAGATCCAAGTCCACCGAATCCTGGGAATCGAGGTCCTGAAACACGTCCCATTAACCCCAAAAATATTTACGGAACAATTTGAATACCTGGCAGTTGACAGCTGACGATCCTTCCTCTTGCCTTGCTGACTCCGCTTCGAAGTTTTCCCGGCTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCCACATCTACAGTCTTCTTG</pcr_primer_p1>
		<pcr_primer_p2>TGGAATTGTAATTTTTACAGAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCA</canonical_amplicon>
		<polymorphic_amplicon>AGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCARTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35720</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>110521</contig_pos>
        <strand></strand>
        <context>ATCCTTCCTT[C/T]WCACTAGACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTT</left_flank>
        <right_flank>ACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCTCCTCTGTGGCCTTGTGAATCGCTTTCAAGTGGGCAACAACATTCGATGTTCGTTCGGAAACATAGTTGCATTTGGGACAACAGTATTGCTTCACCATATTTGTGGTAAAAAAGGGTGAAATGACTGTTTTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTCCCATGACCCTAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTTCAAAAAAACATTCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCCAGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCAAGGGTTTCACATTTGAATTTCAGATTTCTGGACGACTTCGATTACCCCTGCAACTACGAAATCTCTTCTAATCTTCAATTTTTCATAATTGTTATAACTTTTTACATAAATTAAAATGTTTAAAAATATAGTATTTATTGCAATAAAATTCAAAAAATAAATTTTTTTAAAGATGGAATATTTCGAAAAGTTGTCGTTTCCTCTCCGGAAGATCCAAGTCCACCGAATCCTGGGAATCGAGGTCCTGAAACACGTCCCATTAACCCCAAAAATATTTACGGAACAATTTGAATACCTGGCAGTTGACAGCTGACGATCCTTCCTCTTGCCTTGCTGACTCCGCTTCGAAGTTTTCCCGGCTGAAAAAAATCGATAATTATGCTTGAATTTTAGGAA</canonical>
            <polymorphic>ATCCTCCTCTGTGGCCTTGTGAATCGCTTTCAAGTGGGCAACAACATTCGATGTTCGTTCGGAAACATAGTTGCATTTGGGACAACAGTATTGCTTCACCATATTTGTGGTAAAAAAGGGTGAAATGACTGTTTTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTCCCATGACCCTAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTTCAAAAAAACATTCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCCAGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTYACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCAAGGGTTTCACATTTGAATTTCAGATTTCTGGACGACTTCGATTACCCCTGCAACTACGAAATCTCTTCTAATCTTCAATTTTTCATAATTGTTATAACTTTTTACATAAATTAAAATGTTTAAAAATATAGTATTTATTGCAATAAAATTCAAAAAATAAATTTTTTTAAAGATGGAATATTTCGAAAAGTTGTCGTTTCCTCTCCGGAAGATCCAAGTCCACCGAATCCTGGGAATCGAGGTCCTGAAACACGTCCCATTAACCCCAAAAATATTTACGGAACAATTTGAATACCTGGCAGTTGACAGCTGACGATCCTTCCTCTTGCCTTGCTGACTCCGCTTCGAAGTTTTCCCGGCTGAAAAAAATCGATAATTATGCTTGAATTTTAGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>213 144 113 82 81 62 61 49 38 30 29 21 15 15 13 13 11 8 2</canonical_bands>
                <polymorphic_bands>213 144 113 84 81 62 61 49 38 30 29 21 15 15 13 13 11 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTCCACATCTACAGTCTTCTTG</pcr_primer_p1>
		<pcr_primer_p2>TGGAATTGTAATTTTTACAGAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCA</canonical_amplicon>
		<polymorphic_amplicon>AGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTYACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35721</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>110522</contig_pos>
        <strand></strand>
        <context>TCCTTCCTTY[A/T]CACTAGACCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTC</left_flank>
        <right_flank>CACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTCCTCTGTGGCCTTGTGAATCGCTTTCAAGTGGGCAACAACATTCGATGTTCGTTCGGAAACATAGTTGCATTTGGGACAACAGTATTGCTTCACCATATTTGTGGTAAAAAAGGGTGAAATGACTGTTTTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTCCCATGACCCTAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTTCAAAAAAACATTCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCCAGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCAAGGGTTTCACATTTGAATTTCAGATTTCTGGACGACTTCGATTACCCCTGCAACTACGAAATCTCTTCTAATCTTCAATTTTTCATAATTGTTATAACTTTTTACATAAATTAAAATGTTTAAAAATATAGTATTTATTGCAATAAAATTCAAAAAATAAATTTTTTTAAAGATGGAATATTTCGAAAAGTTGTCGTTTCCTCTCCGGAAGATCCAAGTCCACCGAATCCTGGGAATCGAGGTCCTGAAACACGTCCCATTAACCCCAAAAATATTTACGGAACAATTTGAATACCTGGCAGTTGACAGCTGACGATCCTTCCTCTTGCCTTGCTGACTCCGCTTCGAAGTTTTCCCGGCTGAAAAAAATCGATAATTATGCTTGAATTTTAGGAAA</canonical>
            <polymorphic>TCCTCCTCTGTGGCCTTGTGAATCGCTTTCAAGTGGGCAACAACATTCGATGTTCGTTCGGAAACATAGTTGCATTTGGGACAACAGTATTGCTTCACCATATTTGTGGTAAAAAAGGGTGAAATGACTGTTTTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTCCCATGACCCTAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTTCAAAAAAACATTCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCCAGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCWCACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCAAGGGTTTCACATTTGAATTTCAGATTTCTGGACGACTTCGATTACCCCTGCAACTACGAAATCTCTTCTAATCTTCAATTTTTCATAATTGTTATAACTTTTTACATAAATTAAAATGTTTAAAAATATAGTATTTATTGCAATAAAATTCAAAAAATAAATTTTTTTAAAGATGGAATATTTCGAAAAGTTGTCGTTTCCTCTCCGGAAGATCCAAGTCCACCGAATCCTGGGAATCGAGGTCCTGAAACACGTCCCATTAACCCCAAAAATATTTACGGAACAATTTGAATACCTGGCAGTTGACAGCTGACGATCCTTCCTCTTGCCTTGCTGACTCCGCTTCGAAGTTTTCCCGGCTGAAAAAAATCGATAATTATGCTTGAATTTTAGGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>213 145 113 82 81 62 61 49 38 30 29 21 15 15 13 12 11 8 2</canonical_bands>
                <polymorphic_bands>213 145 113 84 81 62 61 49 38 30 29 21 15 15 13 12 11 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTCCACATCTACAGTCTTCTTG</pcr_primer_p1>
		<pcr_primer_p2>TGGAATTGTAATTTTTACAGAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCA</canonical_amplicon>
		<polymorphic_amplicon>AGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCWCACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35722</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>110533</contig_pos>
        <strand></strand>
        <context>CACTAGACCT[T/C]TAKCCTGGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCT</left_flank>
        <right_flank>TAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCCTTGTGAATCGCTTTCAAGTGGGCAACAACATTCGATGTTCGTTCGGAAACATAGTTGCATTTGGGACAACAGTATTGCTTCACCATATTTGTGGTAAAAAAGGGTGAAATGACTGTTTTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTCCCATGACCCTAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTTCAAAAAAACATTCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCCAGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCAAGGGTTTCACATTTGAATTTCAGATTTCTGGACGACTTCGATTACCCCTGCAACTACGAAATCTCTTCTAATCTTCAATTTTTCATAATTGTTATAACTTTTTACATAAATTAAAATGTTTAAAAATATAGTATTTATTGCAATAAAATTCAAAAAATAAATTTTTTTAAAGATGGAATATTTCGAAAAGTTGTCGTTTCCTCTCCGGAAGATCCAAGTCCACCGAATCCTGGGAATCGAGGTCCTGAAACACGTCCCATTAACCCCAAAAATATTTACGGAACAATTTGAATACCTGGCAGTTGACAGCTGACGATCCTTCCTCTTGCCTTGCTGACTCCGCTTCGAAGTTTTCCCGGCTGAAAAAAATCGATAATTATGCTTGAATTTTAGGAAAAATAGAAATTC</canonical>
            <polymorphic>GGCCTTGTGAATCGCTTTCAAGTGGGCAACAACATTCGATGTTCGTTCGGAAACATAGTTGCATTTGGGACAACAGTATTGCTTCACCATATTTGTGGTAAAAAAGGGTGAAATGACTGTTTTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTCCCATGACCCTAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTTCAAAAAAACATTCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCCAGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTYTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCAAGGGTTTCACATTTGAATTTCAGATTTCTGGACGACTTCGATTACCCCTGCAACTACGAAATCTCTTCTAATCTTCAATTTTTCATAATTGTTATAACTTTTTACATAAATTAAAATGTTTAAAAATATAGTATTTATTGCAATAAAATTCAAAAAATAAATTTTTTTAAAGATGGAATATTTCGAAAAGTTGTCGTTTCCTCTCCGGAAGATCCAAGTCCACCGAATCCTGGGAATCGAGGTCCTGAAACACGTCCCATTAACCCCAAAAATATTTACGGAACAATTTGAATACCTGGCAGTTGACAGCTGACGATCCTTCCTCTTGCCTTGCTGACTCCGCTTCGAAGTTTTCCCGGCTGAAAAAAATCGATAATTATGCTTGAATTTTAGGAAAAATAGAAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCCACATCTACAGTCTTCTTG</pcr_primer_p1>
		<pcr_primer_p2>TGGAATTGTAATTTTTACAGAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCA</canonical_amplicon>
		<polymorphic_amplicon>AGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTYTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35723</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>110536</contig_pos>
        <strand></strand>
        <context>TAGACCTYTA[G/T]CCTGGACCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTA</left_flank>
        <right_flank>CCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTGTGAATCGCTTTCAAGTGGGCAACAACATTCGATGTTCGTTCGGAAACATAGTTGCATTTGGGACAACAGTATTGCTTCACCATATTTGTGGTAAAAAAGGGTGAAATGACTGTTTTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTCCCATGACCCTAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTTCAAAAAAACATTCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCCAGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCAAGGGTTTCACATTTGAATTTCAGATTTCTGGACGACTTCGATTACCCCTGCAACTACGAAATCTCTTCTAATCTTCAATTTTTCATAATTGTTATAACTTTTTACATAAATTAAAATGTTTAAAAATATAGTATTTATTGCAATAAAATTCAAAAAATAAATTTTTTTAAAGATGGAATATTTCGAAAAGTTGTCGTTTCCTCTCCGGAAGATCCAAGTCCACCGAATCCTGGGAATCGAGGTCCTGAAACACGTCCCATTAACCCCAAAAATATTTACGGAACAATTTGAATACCTGGCAGTTGACAGCTGACGATCCTTCCTCTTGCCTTGCTGACTCCGCTTCGAAGTTTTCCCGGCTGAAAAAAATCGATAATTATGCTTGAATTTTAGGAAAAATAGAAATTCAGG</canonical>
            <polymorphic>CTTGTGAATCGCTTTCAAGTGGGCAACAACATTCGATGTTCGTTCGGAAACATAGTTGCATTTGGGACAACAGTATTGCTTCACCATATTTGTGGTAAAAAAGGGTGAAATGACTGTTTTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTCCCATGACCCTAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTTCAAAAAAACATTCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCCAGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAKCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCAAGGGTTTCACATTTGAATTTCAGATTTCTGGACGACTTCGATTACCCCTGCAACTACGAAATCTCTTCTAATCTTCAATTTTTCATAATTGTTATAACTTTTTACATAAATTAAAATGTTTAAAAATATAGTATTTATTGCAATAAAATTCAAAAAATAAATTTTTTTAAAGATGGAATATTTCGAAAAGTTGTCGTTTCCTCTCCGGAAGATCCAAGTCCACCGAATCCTGGGAATCGAGGTCCTGAAACACGTCCCATTAACCCCAAAAATATTTACGGAACAATTTGAATACCTGGCAGTTGACAGCTGACGATCCTTCCTCTTGCCTTGCTGACTCCGCTTCGAAGTTTTCCCGGCTGAAAAAAATCGATAATTATGCTTGAATTTTAGGAAAAATAGAAATTCAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>366 174 158 124 52 50 44 32</canonical_bands>
                <polymorphic_bands>366 206 158 124 52 50 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTCCACATCTACAGTCTTCTTG</pcr_primer_p1>
		<pcr_primer_p2>TGGAATTGTAATTTTTACAGAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCA</canonical_amplicon>
		<polymorphic_amplicon>AGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAKCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35724</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>110654</contig_pos>
        <strand></strand>
        <context>TTCAGATTTC[T/C]GGACGACTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCTGTAAAAATTACAATTCCAAGGGTTTCACATTTGAATTTCAGATTTC</left_flank>
        <right_flank>GGACGACTTCGATTACCCCTGCAACTACGAAATCTCTTCTAATCTTCAAT</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTCCCATGACCCTAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTTCAAAAAAACATTCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCCAGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCAAGGGTTTCACATTTGAATTTCAGATTTCTGGACGACTTCGATTACCCCTGCAACTACGAAATCTCTTCTAATCTTCAATTTTTCATAATTGTTATAACTTTTTACATAAATTAAAATGTTTAAAAATATAGTATTTATTGCAATAAAATTCAAAAAATAAATTTTTTTAAAGATGGAATATTTCGAAAAGTTGTCGTTTCCTCTCCGGAAGATCCAAGTCCACCGAATCCTGGGAATCGAGGTCCTGAAACACGTCCCATTAACCCCAAAAATATTTACGGAACAATTTGAATACCTGGCAGTTGACAGCTGACGATCCTTCCTCTTGCCTTGCTGACTCCGCTTCGAAGTTTTCCCGGCTGAAAAAAATCGATAATTATGCTTGAATTTTAGGAAAAATAGAAATTCAGGAGAAAAACTCATCTTTATCGATCGATGTTCAGCTTGCGGGACGATGATGAACACTGAAAATAGTACCATTAACCGGACATTTTTTTTTTCGGAACAATTTTCTTACCGGGAGAGACGA</canonical>
            <polymorphic>TTTCAGCCTTTTATAGTGGTTCCGAGAGGATCACTTTCCCATGACCCTAGCTTGGGAATGAGGTCAACTTTCTCATTCCAGAACAAAAATTCAAATTTCAAAAAAACATTCCCACCCTCTAAATCTTACTATAACATTTTTCAATTTTTTTCCTTTTTTGATTGTTCTTTTTCCTCCATTAATCATCATTTTTATTCCAGATCTACAGCCCTCTTGGTACCAGTCCACATCTACAGTCTTCTTGGCAATCTTCTTCTCTCTTCCACCCAAATCTGTTTTTTTTGTGAGTTTTACTATTGTATTGTTCCGTAAATTCATCTTGTAGGTTTTGTTCAGTTCAAAATTTACAGATCTTCATCCTTCCTTCACACTAGACCTTTAGCCTGGACCATTGCAGATACCGAAGATTTCAAGCTGTTTATTTTCTTGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCAAGGGTTTCACATTTGAATTTCAGATTTCYGGACGACTTCGATTACCCCTGCAACTACGAAATCTCTTCTAATCTTCAATTTTTCATAATTGTTATAACTTTTTACATAAATTAAAATGTTTAAAAATATAGTATTTATTGCAATAAAATTCAAAAAATAAATTTTTTTAAAGATGGAATATTTCGAAAAGTTGTCGTTTCCTCTCCGGAAGATCCAAGTCCACCGAATCCTGGGAATCGAGGTCCTGAAACACGTCCCATTAACCCCAAAAATATTTACGGAACAATTTGAATACCTGGCAGTTGACAGCTGACGATCCTTCCTCTTGCCTTGCTGACTCCGCTTCGAAGTTTTCCCGGCTGAAAAAAATCGATAATTATGCTTGAATTTTAGGAAAAATAGAAATTCAGGAGAAAAACTCATCTTTATCGATCGATGTTCAGCTTGCGGGACGATGATGAACACTGAAAATAGTACCATTAACCGGACATTTTTTTTTTCGGAACAATTTTCTTACCGGGAGAGACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGAGTTTTTCTCTTGTATTGTT</pcr_primer_p1>
		<pcr_primer_p2>GGAGAGGAAACGACAACTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCAAGGGTTTCACATTTGAATTTCAGATTTCTGGACGACTTCGATTACCCCTGCAACTACGAAATCTCTTCTAATCTTCAATTTTTCATAATTGTTATAACTTTTTACATAAATTAAAATGTTTAAAAATATAGTATTTATTGCAATAAAATTCAAAAAATAAATTTTTTTAAAGATGGAATATTTCGAAAAGTTGTCGTTTCCTCTCC</canonical_amplicon>
		<polymorphic_amplicon>TGTGAGTTTTTCTCTTGTATTGTTCTGTAAAAATTACAATTCCAAGGGTTTCACATTTGAATTTCAGATTTCYGGACGACTTCGATTACCCCTGCAACTACGAAATCTCTTCTAATCTTCAATTTTTCATAATTGTTATAACTTTTTACATAAATTAAAATGTTTAAAAATATAGTATTTATTGCAATAAAATTCAAAAAATAAATTTTTTTAAAGATGGAATATTTCGAAAAGTTGTCGTTTCCTCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35725</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>140467</contig_pos>
        <strand>+</strand>
        <context>caaacttTAG[C/G]ATTCATTGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GATTCTTGAAATCTCTTATAGGAACCGAGATAATTGAGCTCAAACTTTAG</left_flank>
        <right_flank>ATTCATTGAGTTAATAGAAGTAAGGACACACTCACAATCTTAAAATCGAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAGTTATGGAGAAGGACATGTGATGTATGTGGCCGAGAGGTTGAATAAGACGGCGCAGTACTTTGATGCCGATATCGAGTGGGATAATGAGACCAAGGTTTTTGAGAGCAAAGTGGTAAGTTGAATAATTGGAAATGCTAAATTTGAGCTCAATTATCTCGATTCCTATGAAAGATATCAAAAATCTCTCAACTGATAAAATGTTTATCATAATGTCACCAGCATTTTATCAGTTGGCAGATTTTCGATATAGCTTACAGGAGCCGAGATAATTGAGCTCAAAGTTAGCAGTGTTAATCGGAAATGTACCGTTTTACTGCTCGAAAAGACGCCATCTCTAGTAATTGCATTTTGAGCTCAATCATCTCGGCTCCTTTGAAAGATTTCATTAATCTGTCAACAGATAAAATGTTACTGATACTATTAGGAACATTTTATCAGTTGACAGATTCTTGAAATCTCTTATAGGAACCGAGATAATTGAGCTCAAACTTTAGCATTCATTGAGTTAATAGAAGTAAGGACACACTCACAATCTTAAAATCGAAAATTGCTAAAATTTAGAAATTTATAAAAATTTGAAGTTCTGGAAATTCGGGAATCTAGATTTACCGAACCCCGAAAAACCCAAAAATCCGCTTCCCAATATACCAATTTGAAATTGACAATTTTCTAGTACTTGCTCTTTGAGTTCAATTATCTCGGCTCCTTTGAAAGATTTCATTAATCTGTCAACAGATAAAATGTTACTGATACTATGAGGAACATTTTATCAGTTGACAGATTATTGAGATCTTTCAAAGGAGCCGAGATAATTGAGCTGAAATTTAGACGTATAGATTGGAGATAGACATCCCCAGAACTCCCGAAAATCCGCTTCACAATGTCCCAATTGGCAATTTCCAGGGCAAAAAATACGAGCTAACCGAATCGTGGGGCGAGCAGAACGTCGACGTCCGCCGTCCAGTCATCTGCACCGCCGACGTCGCCAGTGGCAT</canonical>
            <polymorphic>TTTAGTTATGGAGAAGGACATGTGATGTATGTGGCCGAGAGGTTGAATAAGACGGCGCAGTACTTTGATGCCGATATCGAGTGGGATAATGAGACCAAGGTTTTTGAGAGCAAAGTGGTAAGTTGAATAATTGGAAATGCTAAATTTGAGCTCAATTATCTCGATTCCTATGAAAGATATCAAAAATCTCTCAACTGATAAAATGTTTATCATAATGTCACCAGCATTTTATCAGTTGGCAGATTTTCGATATAGCTTACAGGAGCCGAGATAATTGAGCTCAAAGTTAGCAGTGTTAATCGGAAATGTACCGTTTTACTGCTCGAAAAGACGCCATCTCTAGTAATTGCATTTTGAGCTCAATCATCTCGGCTCCTTTGAAAGATTTCATTAATCTGTCAACAGATAAAATGTTACTGATACTATTAGGAACATTTTATCAGTTGACAGATTCTTGAAATCTCTTATAGGAACCGAGATAATTGAGCTCAAACTTTAGSATTCATTGAGTTAATAGAAGTAAGGACACACTCACAATCTTAAAATCGAAAATTGCTAAAATTTAGAAATTTATAAAAATTTGAAGTTCTGGAAATTCGGGAATCTAGATTTACCGAACCCCGAAAAACCCAAAAATCCGCTTCCCAATATACCAATTTGAAATTGACAATTTTCTAGTACTTGCTCTTTGAGTTCAATTATCTCGGCTCCTTTGAAAGATTTCATTAATCTGTCAACAGATAAAATGTTACTGATACTATGAGGAACATTTTATCAGTTGACAGATTATTGAGATCTTTCAAAGGAGCCGAGATAATTGAGCTGAAATTTAGACGTATAGATTGGAGATAGACATCCCCAGAACTCCCGAAAATCCGCTTCACAATGTCCCAATTGGCAATTTCCAGGGCAAAAAATACGAGCTAACCGAATCGTGGGGCGAGCAGAACGTCGACGTCCGCCGTCCAGTCATCTGCACCGCCGACGTCGCCAGTGGCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGGAAATGTACCGTTTTAC</pcr_primer_p1>
		<pcr_primer_p2>CAATTTTCGATTTTAAGATTGTG</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>ATCGGAAATGTACCGTTTTACTGCTCGAAAAGACGCCATCTCTAGTAATTGCATTTTGAGCTCAATCATCTCGGCTCCTTTGAAAGATTTCATTAATCTGTCAACAGATAAAATGTTACTGATACTATTAGGAACATTTTATCAGTTGACAGATTCTTGAAATCTCTTATAGGAACCGAGATAATTGAGCTCAAACTTTAGCATTCATTGAGTTAATAGAAGTAAGGACACACTCACAATCTTAAAATCGAAAATTG</canonical_amplicon>
		<polymorphic_amplicon>ATCGGAAATGTACCGTTTTACTGCTCGAAAAGACGCCATCTCTAGTAATTGCATTTTGAGCTCAATCATCTCGGCTCCTTTGAAAGATTTCATTAATCTGTCAACAGATAAAATGTTACTGATACTATTAGGAACATTTTATCAGTTGACAGATTCTTGAAATCTCTTATAGGAACCGAGATAATTGAGCTCAAACTTTAGSATTCATTGAGTTAATAGAAGTAAGGACACACTCACAATCTTAAAATCGAAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35726</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>140486</contig_pos>
        <strand>+</strand>
        <context>AGTTAATAGA[A/C]GTAAGGACAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGGAACCGAGATAATTGAGCTCAAACTTTAGCATTCATTGAGTTAATAGA</left_flank>
        <right_flank>GTAAGGACACACTCACAATCTTAAAATCGAAAATTGCTAAAATTTAGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTGATGTATGTGGCCGAGAGGTTGAATAAGACGGCGCAGTACTTTGATGCCGATATCGAGTGGGATAATGAGACCAAGGTTTTTGAGAGCAAAGTGGTAAGTTGAATAATTGGAAATGCTAAATTTGAGCTCAATTATCTCGATTCCTATGAAAGATATCAAAAATCTCTCAACTGATAAAATGTTTATCATAATGTCACCAGCATTTTATCAGTTGGCAGATTTTCGATATAGCTTACAGGAGCCGAGATAATTGAGCTCAAAGTTAGCAGTGTTAATCGGAAATGTACCGTTTTACTGCTCGAAAAGACGCCATCTCTAGTAATTGCATTTTGAGCTCAATCATCTCGGCTCCTTTGAAAGATTTCATTAATCTGTCAACAGATAAAATGTTACTGATACTATTAGGAACATTTTATCAGTTGACAGATTCTTGAAATCTCTTATAGGAACCGAGATAATTGAGCTCAAACTTTAGCATTCATTGAGTTAATAGAAGTAAGGACACACTCACAATCTTAAAATCGAAAATTGCTAAAATTTAGAAATTTATAAAAATTTGAAGTTCTGGAAATTCGGGAATCTAGATTTACCGAACCCCGAAAAACCCAAAAATCCGCTTCCCAATATACCAATTTGAAATTGACAATTTTCTAGTACTTGCTCTTTGAGTTCAATTATCTCGGCTCCTTTGAAAGATTTCATTAATCTGTCAACAGATAAAATGTTACTGATACTATGAGGAACATTTTATCAGTTGACAGATTATTGAGATCTTTCAAAGGAGCCGAGATAATTGAGCTGAAATTTAGACGTATAGATTGGAGATAGACATCCCCAGAACTCCCGAAAATCCGCTTCACAATGTCCCAATTGGCAATTTCCAGGGCAAAAAATACGAGCTAACCGAATCGTGGGGCGAGCAGAACGTCGACGTCCGCCGTCCAGTCATCTGCACCGCCGACGTCGCCAGTGGCATCGTCACCGTCTACGATCAA</canonical>
            <polymorphic>ATGTGATGTATGTGGCCGAGAGGTTGAATAAGACGGCGCAGTACTTTGATGCCGATATCGAGTGGGATAATGAGACCAAGGTTTTTGAGAGCAAAGTGGTAAGTTGAATAATTGGAAATGCTAAATTTGAGCTCAATTATCTCGATTCCTATGAAAGATATCAAAAATCTCTCAACTGATAAAATGTTTATCATAATGTCACCAGCATTTTATCAGTTGGCAGATTTTCGATATAGCTTACAGGAGCCGAGATAATTGAGCTCAAAGTTAGCAGTGTTAATCGGAAATGTACCGTTTTACTGCTCGAAAAGACGCCATCTCTAGTAATTGCATTTTGAGCTCAATCATCTCGGCTCCTTTGAAAGATTTCATTAATCTGTCAACAGATAAAATGTTACTGATACTATTAGGAACATTTTATCAGTTGACAGATTCTTGAAATCTCTTATAGGAACCGAGATAATTGAGCTCAAACTTTAGCATTCATTGAGTTAATAGAMGTAAGGACACACTCACAATCTTAAAATCGAAAATTGCTAAAATTTAGAAATTTATAAAAATTTGAAGTTCTGGAAATTCGGGAATCTAGATTTACCGAACCCCGAAAAACCCAAAAATCCGCTTCCCAATATACCAATTTGAAATTGACAATTTTCTAGTACTTGCTCTTTGAGTTCAATTATCTCGGCTCCTTTGAAAGATTTCATTAATCTGTCAACAGATAAAATGTTACTGATACTATGAGGAACATTTTATCAGTTGACAGATTATTGAGATCTTTCAAAGGAGCCGAGATAATTGAGCTGAAATTTAGACGTATAGATTGGAGATAGACATCCCCAGAACTCCCGAAAATCCGCTTCACAATGTCCCAATTGGCAATTTCCAGGGCAAAAAATACGAGCTAACCGAATCGTGGGGCGAGCAGAACGTCGACGTCCGCCGTCCAGTCATCTGCACCGCCGACGTCGCCAGTGGCATCGTCACCGTCTACGATCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGGAAATGTACCGTTTTAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTCCAGAACTTCAAATTTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>298</pcr_amplicon_size>
		<canonical_amplicon>ATCGGAAATGTACCGTTTTACTGCTCGAAAAGACGCCATCTCTAGTAATTGCATTTTGAGCTCAATCATCTCGGCTCCTTTGAAAGATTTCATTAATCTGTCAACAGATAAAATGTTACTGATACTATTAGGAACATTTTATCAGTTGACAGATTCTTGAAATCTCTTATAGGAACCGAGATAATTGAGCTCAAACTTTAGCATTCATTGAGTTAATAGAAGTAAGGACACACTCACAATCTTAAAATCGAAAATTGCTAAAATTTAGAAATTTATAAAAATTTGAAGTTCTGGAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATCGGAAATGTACCGTTTTACTGCTCGAAAAGACGCCATCTCTAGTAATTGCATTTTGAGCTCAATCATCTCGGCTCCTTTGAAAGATTTCATTAATCTGTCAACAGATAAAATGTTACTGATACTATTAGGAACATTTTATCAGTTGACAGATTCTTGAAATCTCTTATAGGAACCGAGATAATTGAGCTCAAACTTTAGCATTCATTGAGTTAATAGAMGTAAGGACACACTCACAATCTTAAAATCGAAAATTGCTAAAATTTAGAAATTTATAAAAATTTGAAGTTCTGGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35727</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>145500</contig_pos>
        <strand></strand>
        <context>tctcaatcgt[T/C]gcccgttttc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTACCGTAACCTGGAAAATCCCATTTTGACTGTTTTTTTTTCTCAATCGT</left_flank>
        <right_flank>GCCCGTTTTCAGGCTTTTTTTCCCACTGAAAAAGCAGTCGAAATCGAAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGGGCCGAATCGTCAGTCCCACCGGCTACGAACCCCAGGAGGTGTCCCTGGTGATGCACACCCAGGACCCGTCTCACCTTCGCCAACAACACATGCAACGTGGATTACTGTCGAAACGACGGCGTCAATGGATGGAATTAACACAGGAACATCACAAAGACTGGAAGATGTCGTCGTATTTTGTGTCCGATGACTCAGAATTATGTGGATTCTTATCCGAATCGATTGCTATGGGACACGAGAAGGATGTGATTCAGATAGAGTCGATGCTGAGACACGAGGCAGTTATGATCTTGGTGTTGGACGGGAATCACTTGCATGGACCAGTGATTTTGCAAGGTTTGCTTTTTTTTTTTGGGGGGGGGGGGGGGTTTGGTATTTTCCGAAAAATTGGAGGAAAATGGGTGAAAATGGTTAAAAATATCCAATAAAATTCACAAAACGAAAACTACCGTAACCTGGAAAATCCCATTTTGACTGTTTTTTTTTCTCAATCGTTGCCCGTTTTCAGGCTTTTTTTCCCACTGAAAAAGCAGTCGAAATCGAAAAACACCGTAATCTCTAGCTACATACATGCTCCTTTAAACGATTTTTCAAAAAGAAACAATTCAATTTTTCGACGATTTTGATAGTTTTTTTTTCGATGAAAATCGCCAAAAAGTCGATTAAAATAAGTGGAATTCGTCGAAAAAATGACCAAAAATAAGCTCGACAAACTTGAGACTACAGTAATCAAAGGCGCATGAAATCCAGAAAAAAGTTTAAAAAGTGAAAAAATGGTCAAGAAGGACCAAAAATGGACCAAGAACTGGCCGAAAATAGGTCAAAAACGGCTGAAAACATTACGGAAAACCTGGACTTTCTACAGTAATCAAAGGTTTATGAAATTTAATTTTTTGGATATAGAATGAACTGAGCTACAGTAATCAAAAGCGCATGAAACCCTGAAAAGAGAGAAAAAACATCGGAAAAATCTGCCAAAAAACGGACAAAAGAACG</canonical>
            <polymorphic>ACGGGCCGAATCGTCAGTCCCACCGGCTACGAACCCCAGGAGGTGTCCCTGGTGATGCACACCCAGGACCCGTCTCACCTTCGCCAACAACACATGCAACGTGGATTACTGTCGAAACGACGGCGTCAATGGATGGAATTAACACAGGAACATCACAAAGACTGGAAGATGTCGTCGTATTTTGTGTCCGATGACTCAGAATTATGTGGATTCTTATCCGAATCGATTGCTATGGGACACGAGAAGGATGTGATTCAGATAGAGTCGATGCTGAGACACGAGGCAGTTATGATCTTGGTGTTGGACGGGAATCACTTGCATGGACCAGTGATTTTGCAAGGTTTGCTTTTTTTTTTTGGGGGGGGGGGGGGGTTTGGTATTTTCCGAAAAATTGGAGGAAAATGGGTGAAAATGGTTAAAAATATCCAATAAAATTCACAAAACGAAAACTACCGTAACCTGGAAAATCCCATTTTGACTGTTTTTTTTTCTCAATCGTYGCCCGTTTTCAGGCTTTTTTTCCCACTGAAAAAGCAGTCGAAATCGAAAAACACCGTAATCTCTAGCTACATACATGCTCCTTTAAACGATTTTTCAAAAAGAAACAATTCAATTTTTCGACGATTTTGATAGTTTTTTTTTCGATGAAAATCGCCAAAAAGTCGATTAAAATAAGTGGAATTCGTCGAAAAAATGACCAAAAATAAGCTCGACAAACTTGAGACTACAGTAATCAAAGGCGCATGAAATCCAGAAAAAAGTTTAAAAAGTGAAAAAATGGTCAAGAAGGACCAAAAATGGACCAAGAACTGGCCGAAAATAGGTCAAAAACGGCTGAAAACATTACGGAAAACCTGGACTTTCTACAGTAATCAAAGGTTTATGAAATTTAATTTTTTGGATATAGAATGAACTGAGCTACAGTAATCAAAAGCGCATGAAACCCTGAAAAGAGAGAAAAAACATCGGAAAAATCTGCCAAAAAACGGACAAAAGAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGTGAAAATGGTTAAAAATATC</pcr_primer_p1>
		<pcr_primer_p2>AACTATCAAAATCGTCGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>GGGTGAAAATGGTTAAAAATATCCAATAAAATTCACAAAACGAAAACTACCGTAACCTGGAAAATCCCATTTTGACTGTTTTTTTTTCTCAATCGTTGCCCGTTTTCAGGCTTTTTTTCCCACTGAAAAAGCAGTCGAAATCGAAAAACACCGTAATCTCTAGCTACATACATGCTCCTTTAAACGATTTTTCAAAAAGAAACAATTCAATTTTTCGACGATTTTGATAGTT</canonical_amplicon>
		<polymorphic_amplicon>GGGTGAAAATGGTTAAAAATATCCAATAAAATTCACAAAACGAAAACTACCGTAACCTGGAAAATCCCATTTTGACTGTTTTTTTTTCTCAATCGTYGCCCGTTTTCAGGCTTTTTTTCCCACTGAAAAAGCAGTCGAAATCGAAAAACACCGTAATCTCTAGCTACATACATGCTCCTTTAAACGATTTTTCAAAAAGAAACAATTCAATTTTTCGACGATTTTGATAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35728</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>145904</contig_pos>
        <strand>+</strand>
        <context>TTTTTTGGAT[A/G]TAGAATGAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTGGACTTTCTACAGTAATCAAAGGTTTATGAAATTTAATTTTTTGGAT</left_flank>
        <right_flank>TAGAATGAACTGAGCTACAGTAATCAAAAGCGCATGAAACCCTGAAAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGAAAATGGTTAAAAATATCCAATAAAATTCACAAAACGAAAACTACCGTAACCTGGAAAATCCCATTTTGACTGTTTTTTTTTCTCAATCGTTGCCCGTTTTCAGGCTTTTTTTCCCACTGAAAAAGCAGTCGAAATCGAAAAACACCGTAATCTCTAGCTACATACATGCTCCTTTAAACGATTTTTCAAAAAGAAACAATTCAATTTTTCGACGATTTTGATAGTTTTTTTTTCGATGAAAATCGCCAAAAAGTCGATTAAAATAAGTGGAATTCGTCGAAAAAATGACCAAAAATAAGCTCGACAAACTTGAGACTACAGTAATCAAAGGCGCATGAAATCCAGAAAAAAGTTTAAAAAGTGAAAAAATGGTCAAGAAGGACCAAAAATGGACCAAGAACTGGCCGAAAATAGGTCAAAAACGGCTGAAAACATTACGGAAAACCTGGACTTTCTACAGTAATCAAAGGTTTATGAAATTTAATTTTTTGGATATAGAATGAACTGAGCTACAGTAATCAAAAGCGCATGAAACCCTGAAAAGAGAGAAAAAACATCGGAAAAATCTGCCAAAAAACGGACAAAAGAACGGTCCGAAAATTGCCATGAATGGTCCAAAAAAAAATCACGAAAATCGCCGAAAAATTGACCAAAAATATACTCGAAATACGGAAAGCTACAGTAATCAAAGGCGCATGAAATTCAGAAAAAAGTGAAAAACGGTCAGAAAACGGACCGAAAATGGACCGAGAACTGGCCGAAGATCAGTTAAAATAAACAAAAAAATTGGTTATCTACAGTAATCAAAGGTACATATAACCTTGAAATTTCGAAATTTTGGGCTACAGTAATCCAACTAGGATTACTGTAGCCCAAAATTTGATTATCGAAGGCGCAAAAACGGACCAAGAACTGGCCGAAAATCGGTCAAAAACAGCTGAAAATAATACGGAAAAATTGAACGTTCTACAGTAATCAAAGGCGCATGGAACCTT</canonical>
            <polymorphic>GGTGAAAATGGTTAAAAATATCCAATAAAATTCACAAAACGAAAACTACCGTAACCTGGAAAATCCCATTTTGACTGTTTTTTTTTCTCAATCGTTGCCCGTTTTCAGGCTTTTTTTCCCACTGAAAAAGCAGTCGAAATCGAAAAACACCGTAATCTCTAGCTACATACATGCTCCTTTAAACGATTTTTCAAAAAGAAACAATTCAATTTTTCGACGATTTTGATAGTTTTTTTTTCGATGAAAATCGCCAAAAAGTCGATTAAAATAAGTGGAATTCGTCGAAAAAATGACCAAAAATAAGCTCGACAAACTTGAGACTACAGTAATCAAAGGCGCATGAAATCCAGAAAAAAGTTTAAAAAGTGAAAAAATGGTCAAGAAGGACCAAAAATGGACCAAGAACTGGCCGAAAATAGGTCAAAAACGGCTGAAAACATTACGGAAAACCTGGACTTTCTACAGTAATCAAAGGTTTATGAAATTTAATTTTTTGGATRTAGAATGAACTGAGCTACAGTAATCAAAAGCGCATGAAACCCTGAAAAGAGAGAAAAAACATCGGAAAAATCTGCCAAAAAACGGACAAAAGAACGGTCCGAAAATTGCCATGAATGGTCCAAAAAAAAATCACGAAAATCGCCGAAAAATTGACCAAAAATATACTCGAAATACGGAAAGCTACAGTAATCAAAGGCGCATGAAATTCAGAAAAAAGTGAAAAACGGTCAGAAAACGGACCGAAAATGGACCGAGAACTGGCCGAAGATCAGTTAAAATAAACAAAAAAATTGGTTATCTACAGTAATCAAAGGTACATATAACCTTGAAATTTCGAAATTTTGGGCTACAGTAATCCAACTAGGATTACTGTAGCCCAAAATTTGATTATCGAAGGCGCAAAAACGGACCAAGAACTGGCCGAAAATCGGTCAAAAACAGCTGAAAATAATACGGAAAAATTGAACGTTCTACAGTAATCAAAGGCGCATGGAACCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACGGCTGAAAACATTAC</pcr_primer_p1>
		<pcr_primer_p2>TTTCGAGTATATTTTTGGTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAACGGCTGAAAACATTACGGAAAACCTGGACTTTCTACAGTAATCAAAGGTTTATGAAATTTAATTTTTTGGATATAGAATGAACTGAGCTACAGTAATCAAAAGCGCATGAAACCCTGAAAAGAGAGAAAAAACATCGGAAAAATCTGCCAAAAAACGGACAAAAGAACGGTCCGAAAATTGCCATGAATGGTCCAAAAAAAAATCACGAAAATCGCCGAAAAATTGACCAAAAATATACTCGAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAACGGCTGAAAACATTACGGAAAACCTGGACTTTCTACAGTAATCAAAGGTTTATGAAATTTAATTTTTTGGATRTAGAATGAACTGAGCTACAGTAATCAAAAGCGCATGAAACCCTGAAAAGAGAGAAAAAACATCGGAAAAATCTGCCAAAAAACGGACAAAAGAACGGTCCGAAAATTGCCATGAATGGTCCAAAAAAAAATCACGAAAATCGCCGAAAAATTGACCAAAAATATACTCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35730</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>162140</contig_pos>
        <strand></strand>
        <context>aaatttaaaa[A/T]taatcaaatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACGGTAGGGTAAACAAAGATGAAATTTTGAAAAACATCGAAATTTAAAA</left_flank>
        <right_flank>TAATCAAATTTTGATAAAAATTGATATCACTACTTCAAATCACATGATAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCGCCAGGATGTATGTCTATGATGAATGTACCATTGAGAGATAATCATCATCAAATGCAAAGGGATTCACCAGGAGAGTCCATTGCAGCCGCTGATAACACTCATGGAGTGCTGATGACTCCAAATTTGGTTATGCGGTAAGTGCGCTCTATTGGAAATTTAAAGTTTTCGAATTTTGTGTGCAGAATTGCTATTCCCATGTGATTTTAGGTTGTCATAACAATTTTTTTCAGAATCGGGCAATTTTGAATATTTTTGAATGTATTTTTTTTTCTGAAAATCTTGTTCATCCCGTTGTGGCTCTTTGAGCTCACTTATCACGCTTCCTACAGAAGATATCGAAAATTAGTCTGCTGATAAAATGTTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTTGATACCTGTTATAGGAACCGAGATAATTAAGCTTAAAGTCGACGGTAGGGTAAACAAAGATGAAATTTTGAAAAACATCGAAATTTAAAAATAATCAAATTTTGATAAAAATTGATATCACTACTTCAAATCACATGATAATAAGAATCGATATAAAAAATTAGCAAATTTTGGAAATTTGAGATTTGGTCTTTTTTTTGCGAAAATCGAAAATTTTCGAAATTGTCCGATTCTGATAAAAATTGATATCACGACCTGAAACAACATTGGAATCATTAGCCAACTCGGCAACTTGGACGATGTTAAAAATTGACAATTTTTAAAAAAATTTCGATTTTTGAAAAATTTGGAAATTTTAAATTGGACAATTTTAAAACGTTCGAATTTTTTCAAAAATCGAAATCTCAATTTTTGAAATTTTGCAAAATTTCAAACTGGATATTGGTTCATGTGTAATTGCAGTCCGCCAAGTCAATTTTTATCGCGATCGGACAATTTTGAATTTTTTTTCAAAATTCAAAAATTCAATTTTTCCAGATCCCCTCACAATCGAAGTGCCGCTGTCCAACAACACTACAATATGCCATCAAC</canonical>
            <polymorphic>CATCGCCAGGATGTATGTCTATGATGAATGTACCATTGAGAGATAATCATCATCAAATGCAAAGGGATTCACCAGGAGAGTCCATTGCAGCCGCTGATAACACTCATGGAGTGCTGATGACTCCAAATTTGGTTATGCGGTAAGTGCGCTCTATTGGAAATTTAAAGTTTTCGAATTTTGTGTGCAGAATTGCTATTCCCATGTGATTTTAGGTTGTCATAACAATTTTTTTCAGAATCGGGCAATTTTGAATATTTTTGAATGTATTTTTTTTTCTGAAAATCTTGTTCATCCCGTTGTGGCTCTTTGAGCTCACTTATCACGCTTCCTACAGAAGATATCGAAAATTAGTCTGCTGATAAAATGTTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTTGATACCTGTTATAGGAACCGAGATAATTAAGCTTAAAGTCGACGGTAGGGTAAACAAAGATGAAATTTTGAAAAACATCGAAATTTAAAAWTAATCAAATTTTGATAAAAATTGATATCACTACTTCAAATCACATGATAATAAGAATCGATATAAAAAATTAGCAAATTTTGGAAATTTGAGATTTGGTCTTTTTTTTGCGAAAATCGAAAATTTTCGAAATTGTCCGATTCTGATAAAAATTGATATCACGACCTGAAACAACATTGGAATCATTAGCCAACTCGGCAACTTGGACGATGTTAAAAATTGACAATTTTTAAAAAAATTTCGATTTTTGAAAAATTTGGAAATTTTAAATTGGACAATTTTAAAACGTTCGAATTTTTTCAAAAATCGAAATCTCAATTTTTGAAATTTTGCAAAATTTCAAACTGGATATTGGTTCATGTGTAATTGCAGTCCGCCAAGTCAATTTTTATCGCGATCGGACAATTTTGAATTTTTTTTCAAAATTCAAAAATTCAATTTTTCCAGATCCCCTCACAATCGAAGTGCCGCTGTCCAACAACACTACAATATGCCATCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAATTTTGAATATTTTTGAATG</pcr_primer_p1>
		<pcr_primer_p2>TATTGTAGTGTTGTTGGACAGC</pcr_primer_p2>
		<pcr_amplicon_size>749</pcr_amplicon_size>
		<canonical_amplicon>GCAATTTTGAATATTTTTGAATGTATTTTTTTTTCTGAAAATCTTGTTCATCCCGTTGTGGCTCTTTGAGCTCACTTATCACGCTTCCTACAGAAGATATCGAAAATTAGTCTGCTGATAAAATGTTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTTGATACCTGTTATAGGAACCGAGATAATTAAGCTTAAAGTCGACGGTAGGGTAAACAAAGATGAAATTTTGAAAAACATCGAAATTTAAAAATAATCAAATTTTGATAAAAATTGATATCACTACTTCAAATCACATGATAATAAGAATCGATATAAAAAATTAGCAAATTTTGGAAATTTGAGATTTGGTCTTTTTTTTGCGAAAATCGAAAATTTTCGAAATTGTCCGATTCTGATAAAAATTGATATCACGACCTGAAACAACATTGGAATCATTAGCCAACTCGGCAACTTGGACGATGTTAAAAATTGACAATTTTTAAAAAAATTTCGATTTTTGAAAAATTTGGAAATTTTAAATTGGACAATTTTAAAACGTTCGAATTTTTTCAAAAATCGAAATCTCAATTTTTGAAATTTTGCAAAATTTCAAACTGGATATTGGTTCATGTGTAATTGCAGTCCGCCAAGTCAATTTTTATCGCGATCGGACAATTTTGAATTTTTTTTCAAAATTCAAAAATTCAATTTTTCCAGATCCCCTCACAATCGAAGTGCCGCTGTCCAACAACACTACAATA</canonical_amplicon>
		<polymorphic_amplicon>GCAATTTTGAATATTTTTGAATGTATTTTTTTTTCTGAAAATCTTGTTCATCCCGTTGTGGCTCTTTGAGCTCACTTATCACGCTTCCTACAGAAGATATCGAAAATTAGTCTGCTGATAAAATGTTGGTGATATTATGATAAACATTTTATCAGTTGACCACTTTTTGATACCTGTTATAGGAACCGAGATAATTAAGCTTAAAGTCGACGGTAGGGTAAACAAAGATGAAATTTTGAAAAACATCGAAATTTAAAAWTAATCAAATTTTGATAAAAATTGATATCACTACTTCAAATCACATGATAATAAGAATCGATATAAAAAATTAGCAAATTTTGGAAATTTGAGATTTGGTCTTTTTTTTGCGAAAATCGAAAATTTTCGAAATTGTCCGATTCTGATAAAAATTGATATCACGACCTGAAACAACATTGGAATCATTAGCCAACTCGGCAACTTGGACGATGTTAAAAATTGACAATTTTTAAAAAAATTTCGATTTTTGAAAAATTTGGAAATTTTAAATTGGACAATTTTAAAACGTTCGAATTTTTTCAAAAATCGAAATCTCAATTTTTGAAATTTTGCAAAATTTCAAACTGGATATTGGTTCATGTGTAATTGCAGTCCGCCAAGTCAATTTTTATCGCGATCGGACAATTTTGAATTTTTTTTCAAAATTCAAAAATTCAATTTTTCCAGATCCCCTCACAATCGAAGTGCCGCTGTCCAACAACACTACAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35731</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>204484</contig_pos>
        <strand>+</strand>
        <context>AAATTGTGTG[A/T]TCGTTTTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGCGATAAACCTTTTTGCATTCATATTGGCAGTTATCACAAATTGTGTG</left_flank>
        <right_flank>TCGTTTTTCTGGTAATTACCAAATCACCCCAGAAATTTGGCAATTATCGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATACAAAGTTTTCGGAATTAGCTAAATTTAAAAATGTCATAAGAACTGCTACAAATTATCAAAATTGTCTAGATATTCTTATTCGAAAAAAAATGTTGCTGAAATTCAAAATTCTCAAAAGTAAAGAATTTAATCCAAAACATTCAAAACATAAAGCTTGGGAATTTTTGAAGATTCTGAAAAAGTAGATTTTGGAAATTTGGCTCAAAAACTCAAAAAATTTTTTTTGGTCCAAATGATTCAATTCACAATTTTTCTGAATTTGAGAACCTGCTATACCCCGAAATTCCTTTTTTTCTAAATTTCTTCCTCTCGCTCCTAGACAAAACCGTAAACACTCATTATCCCCTAATTCCCAATACACCCATTGTCTAGAAAAATAACTTCGGCACTCTTTCCAAATAATCTTCACTCGCAAATGGGTCTCCAAACCTTCTCTCAAATAAAAAATGCGATAAACCTTTTTGCATTCATATTGGCAGTTATCACAAATTGTGTGATCGTTTTTCTGGTAATTACCAAATCACCCCAGAAATTTGGCAATTATCGACATCTTATGGTTTATTTTTCAATGCTTTCAATTTTATTGGCTTTTTTGGATTATTTGGTGCAACCGGTGAGATGGAAATGGGGGAAAATCGGTATTAAAGAAAAAATTGTCCTGTTTCAAATTACTGATTTGATTGGCTCATTGATATGCGTACAATTCGGTTTGATCTTTAACTGTAAACGAACTTAATATAACTCACAATCAGAACGTTTCTAGCTTCAAAATGACAGTAAAAAAAATAACTTCTCAAAAATTACTATGTTGTATTCTGAAAAAATATTTATGTTTCAAATTGCTGATTTCATGGGTTTGATGATTTTAAATTATTGGATGACGGGATACATTGAACATTGAGAAAGTGATTTCCAATTTTGAGTTAGACACGCAGTGAGTCTCGTTTCTCTGCACTCTAGCCTTAGTACAAAATTTAATTTAATTTGTTTATTGATC</canonical>
            <polymorphic>ATACAAAGTTTTCGGAATTAGCTAAATTTAAAAATGTCATAAGAACTGCTACAAATTATCAAAATTGTCTAGATATTCTTATTCGAAAAAAAATGTTGCTGAAATTCAAAATTCTCAAAAGTAAAGAATTTAATCCAAAACATTCAAAACATAAAGCTTGGGAATTTTTGAAGATTCTGAAAAAGTAGATTTTGGAAATTTGGCTCAAAAACTCAAAAAATTTTTTTTGGTCCAAATGATTCAATTCACAATTTTTCTGAATTTGAGAACCTGCTATACCCCGAAATTCCTTTTTTTCTAAATTTCTTCCTCTCGCTCCTAGACAAAACCGTAAACACTCATTATCCCCTAATTCCCAATACACCCATTGTCTAGAAAAATAACTTCGGCACTCTTTCCAAATAATCTTCACTCGCAAATGGGTCTCCAAACCTTCTCTCAAATAAAAAATGCGATAAACCTTTTTGCATTCATATTGGCAGTTATCACAAATTGTGTGWTCGTTTTTCTGGTAATTACCAAATCACCCCAGAAATTTGGCAATTATCGACATCTTATGGTTTATTTTTCAATGCTTTCAATTTTATTGGCTTTTTTGGATTATTTGGTGCAACCGGTGAGATGGAAATGGGGGAAAATCGGTATTAAAGAAAAAATTGTCCTGTTTCAAATTACTGATTTGATTGGCTCATTGATATGCGTACAATTCGGTTTGATCTTTAACTGTAAACGAACTTAATATAACTCACAATCAGAACGTTTCTAGCTTCAAAATGACAGTAAAAAAAATAACTTCTCAAAAATTACTATGTTGTATTCTGAAAAAATATTTATGTTTCAAATTGCTGATTTCATGGGTTTGATGATTTTAAATTATTGGATGACGGGATACATTGAACATTGAGAAAGTGATTTCCAATTTTGAGTTAGACACGCAGTGAGTCTCGTTTCTCTGCACTCTAGCCTTAGTACAAAATTTAATTTAATTTGTTTATTGATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>498 282 216 4</canonical_bands>
                <polymorphic_bands>714 282 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACACTCATTATCCCCTAATTC</pcr_primer_p1>
		<pcr_primer_p2>ATTGAAAGCATTGAAAAATAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACACTCATTATCCCCTAATTCCCAATACACCCATTGTCTAGAAAAATAACTTCGGCACTCTTTCCAAATAATCTTCACTCGCAAATGGGTCTCCAAACCTTCTCTCAAATAAAAAATGCGATAAACCTTTTTGCATTCATATTGGCAGTTATCACAAATTGTGTGATCGTTTTTCTGGTAATTACCAAATCACCCCAGAAATTTGGCAATTATCGACATCTTATGGTTTATTTTTCAATGCTTTCAAT</canonical_amplicon>
		<polymorphic_amplicon>AAACACTCATTATCCCCTAATTCCCAATACACCCATTGTCTAGAAAAATAACTTCGGCACTCTTTCCAAATAATCTTCACTCGCAAATGGGTCTCCAAACCTTCTCTCAAATAAAAAATGCGATAAACCTTTTTGCATTCATATTGGCAGTTATCACAAATTGTGTGWTCGTTTTTCTGGTAATTACCAAATCACCCCAGAAATTTGGCAATTATCGACATCTTATGGTTTATTTTTCAATGCTTTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35732</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>241892</contig_pos>
        <strand>+</strand>
        <context>AACGCAGTTA[A/G]ATTCAKCGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTGTTCTGGAAAAACCAAGAAAGATAGCCGAATTCTGTCAACGCAGTTA</left_flank>
        <right_flank>ATTCAGCGTGTAGAAAAACCTACGTCTGCAAATTTTCAAACCAATTGAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGGAAACCTATAACAGTTCGATATAGAGGAACTCTATTGATTGAAACAAAACTGTATCAAACCAGTGATTATACTGAATCTGTAATTTTTTTTCGATTTAGTTAGACCATGTTTCTCAACAAAATAATGGAAAAATTTATTCGAACTTCATGACAGCTAAATAGCAAGAAATGTAGTCTTCTATTTATCACTGTTTCCACAAGTGCAAGTATATCCAGTCATGGAAGAGTCTCAATACGATTTACTTTCACTGAAATTATCCGTTTTTGTAAAAAATATCAAAAAGTTGTCAACTAACAAAATGTTTATCATAATATCAAAATTATTTTTTTCAGTTTACTATTTTTTTGATATCTCTCACGGTAACAGAGTTAAATTAAGTCAAACTTGATAGTATGAGGGCCCTACTGTAGTGCGCGTTAAAATTATAGGAATCCCCTCCAGAATGAGTGTTCTGGAAAAACCAAGAAAGATAGCCGAATTCTGTCAACGCAGTTAAATTCAGCGTGTAGAAAAACCTACGTCTGCAAATTTTCAAACCAATTGAGCCATTTTTGAGCTTACAGGGCTCAAAAATCACTTTTTTGGCCGAGTCATAATTATAGGACCCCCCCCCTGGAAAATGAAAAATCTCAAGTTCTTTAGAGAAAAAAATTGTAATTTTTTCGTTGGAAATTGTTAAATTAGTCTTAAAATAGCCTGACGTTTTACACATATTTTGATTACTCTAGTCGAGTTTCAAAAAAATTTATTTTCAGACTTTTTCGGGATTTTTAGGGTTTCTGGAGTAAATTGTGAATAACTTTGCTCCTAGGTGAAATTTTTTGCTGAAATTTACAGGGAGCATGTTAACAATGCTCATGATCATGTTGTAAATGTTCAACGCATCTCTGAGCTCAAAACTGAGCTCGTGCTTTGAACTGAAAAAGTATGCCCAACGGAAAAATTTTCAAAGCTGTAAAAAATGTTCGGAAGATGTTCTGAGTTATCCAAATTGCT</canonical>
            <polymorphic>GGGGAAACCTATAACAGTTCGATATAGAGGAACTCTATTGATTGAAACAAAACTGTATCAAACCAGTGATTATACTGAATCTGTAATTTTTTTTCGATTTAGTTAGACCATGTTTCTCAACAAAATAATGGAAAAATTTATTCGAACTTCATGACAGCTAAATAGCAAGAAATGTAGTCTTCTATTTATCACTGTTTCCACAAGTGCAAGTATATCCAGTCATGGAAGAGTCTCAATACGATTTACTTTCACTGAAATTATCCGTTTTTGTAAAAAATATCAAAAAGTTGTCAACTAACAAAATGTTTATCATAATATCAAAATTATTTTTTTCAGTTTACTATTTTTTTGATATCTCTCACGGTAACAGAGTTAAATTAAGTCAAACTTGATAGTATGAGGGCCCTACTGTAGTGCGCGTTAAAATTATAGGAATCCCCTCCAGAATGAGTGTTCTGGAAAAACCAAGAAAGATAGCCGAATTCTGTCAACGCAGTTARATTCAGCGTGTAGAAAAACCTACGTCTGCAAATTTTCAAACCAATTGAGCCATTTTTGAGCTTACAGGGCTCAAAAATCACTTTTTTGGCCGAGTCATAATTATAGGACCCCCCCCCTGGAAAATGAAAAATCTCAAGTTCTTTAGAGAAAAAAATTGTAATTTTTTCGTTGGAAATTGTTAAATTAGTCTTAAAATAGCCTGACGTTTTACACATATTTTGATTACTCTAGTCGAGTTTCAAAAAAATTTATTTTCAGACTTTTTCGGGATTTTTAGGGTTTCTGGAGTAAATTGTGAATAACTTTGCTCCTAGGTGAAATTTTTTGCTGAAATTTACAGGGAGCATGTTAACAATGCTCATGATCATGTTGTAAATGTTCAACGCATCTCTGAGCTCAAAACTGAGCTCGTGCTTTGAACTGAAAAAGTATGCCCAACGGAAAAATTTTCAAAGCTGTAAAAAATGTTCGGAAGATGTTCTGAGTTATCCAAATTGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>346 216 134 113 73 55 31 19 13</canonical_bands>
                <polymorphic_bands>346 216 134 113 73 55 50 13</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>373 183 159 150 76 43 11 5</canonical_bands>
                <polymorphic_bands>373 259 159 150 43 11 5</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>121 113 84 66 64 56 56 55 54 50 49 48 45 31 28 19 15 13 12 8 7 6</canonical_bands>
                <polymorphic_bands>121 113 84 66 64 56 56 55 54 50 50 49 48 45 28 15 13 12 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAATGAGTGTTCTGGAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTAACAATTTCCAACGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AGAATGAGTGTTCTGGAAAAACCAAGAAAGATAGCCGAATTCTGTCAACGCAGTTAAATTCAGCGTGTAGAAAAACCTACGTCTGCAAATTTTCAAACCAATTGAGCCATTTTTGAGCTTACAGGGCTCAAAAATCACTTTTTTGGCCGAGTCATAATTATAGGACCCCCCCCCTGGAAAATGAAAAATCTCAAGTTCTTTAGAGAAAAAAATTGTAATTTTTTCGTTGGAAATTGTTAAAT</canonical_amplicon>
		<polymorphic_amplicon>AGAATGAGTGTTCTGGAAAAACCAAGAAAGATAGCCGAATTCTGTCAACGCAGTTARATTCAGCGTGTAGAAAAACCTACGTCTGCAAATTTTCAAACCAATTGAGCCATTTTTGAGCTTACAGGGCTCAAAAATCACTTTTTTGGCCGAGTCATAATTATAGGACCCCCCCCCTGGAAAATGAAAAATCTCAAGTTCTTTAGAGAAAAAAATTGTAATTTTTTCGTTGGAAATTGTTAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35733</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>241898</contig_pos>
        <strand>+</strand>
        <context>GTTARATTCA[G/T]CGTGTAGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTGGAAAAACCAAGAAAGATAGCCGAATTCTGTCAACGCAGTTAAATTCA</left_flank>
        <right_flank>CGTGTAGAAAAACCTACGTCTGCAAATTTTCAAACCAATTGAGCCATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTATAACAGTTCGATATAGAGGAACTCTATTGATTGAAACAAAACTGTATCAAACCAGTGATTATACTGAATCTGTAATTTTTTTTCGATTTAGTTAGACCATGTTTCTCAACAAAATAATGGAAAAATTTATTCGAACTTCATGACAGCTAAATAGCAAGAAATGTAGTCTTCTATTTATCACTGTTTCCACAAGTGCAAGTATATCCAGTCATGGAAGAGTCTCAATACGATTTACTTTCACTGAAATTATCCGTTTTTGTAAAAAATATCAAAAAGTTGTCAACTAACAAAATGTTTATCATAATATCAAAATTATTTTTTTCAGTTTACTATTTTTTTGATATCTCTCACGGTAACAGAGTTAAATTAAGTCAAACTTGATAGTATGAGGGCCCTACTGTAGTGCGCGTTAAAATTATAGGAATCCCCTCCAGAATGAGTGTTCTGGAAAAACCAAGAAAGATAGCCGAATTCTGTCAACGCAGTTAAATTCAGCGTGTAGAAAAACCTACGTCTGCAAATTTTCAAACCAATTGAGCCATTTTTGAGCTTACAGGGCTCAAAAATCACTTTTTTGGCCGAGTCATAATTATAGGACCCCCCCCCTGGAAAATGAAAAATCTCAAGTTCTTTAGAGAAAAAAATTGTAATTTTTTCGTTGGAAATTGTTAAATTAGTCTTAAAATAGCCTGACGTTTTACACATATTTTGATTACTCTAGTCGAGTTTCAAAAAAATTTATTTTCAGACTTTTTCGGGATTTTTAGGGTTTCTGGAGTAAATTGTGAATAACTTTGCTCCTAGGTGAAATTTTTTGCTGAAATTTACAGGGAGCATGTTAACAATGCTCATGATCATGTTGTAAATGTTCAACGCATCTCTGAGCTCAAAACTGAGCTCGTGCTTTGAACTGAAAAAGTATGCCCAACGGAAAAATTTTCAAAGCTGTAAAAAATGTTCGGAAGATGTTCTGAGTTATCCAAATTGCTTTTAAA</canonical>
            <polymorphic>ACCTATAACAGTTCGATATAGAGGAACTCTATTGATTGAAACAAAACTGTATCAAACCAGTGATTATACTGAATCTGTAATTTTTTTTCGATTTAGTTAGACCATGTTTCTCAACAAAATAATGGAAAAATTTATTCGAACTTCATGACAGCTAAATAGCAAGAAATGTAGTCTTCTATTTATCACTGTTTCCACAAGTGCAAGTATATCCAGTCATGGAAGAGTCTCAATACGATTTACTTTCACTGAAATTATCCGTTTTTGTAAAAAATATCAAAAAGTTGTCAACTAACAAAATGTTTATCATAATATCAAAATTATTTTTTTCAGTTTACTATTTTTTTGATATCTCTCACGGTAACAGAGTTAAATTAAGTCAAACTTGATAGTATGAGGGCCCTACTGTAGTGCGCGTTAAAATTATAGGAATCCCCTCCAGAATGAGTGTTCTGGAAAAACCAAGAAAGATAGCCGAATTCTGTCAACGCAGTTAAATTCAKCGTGTAGAAAAACCTACGTCTGCAAATTTTCAAACCAATTGAGCCATTTTTGAGCTTACAGGGCTCAAAAATCACTTTTTTGGCCGAGTCATAATTATAGGACCCCCCCCCTGGAAAATGAAAAATCTCAAGTTCTTTAGAGAAAAAAATTGTAATTTTTTCGTTGGAAATTGTTAAATTAGTCTTAAAATAGCCTGACGTTTTACACATATTTTGATTACTCTAGTCGAGTTTCAAAAAAATTTATTTTCAGACTTTTTCGGGATTTTTAGGGTTTCTGGAGTAAATTGTGAATAACTTTGCTCCTAGGTGAAATTTTTTGCTGAAATTTACAGGGAGCATGTTAACAATGCTCATGATCATGTTGTAAATGTTCAACGCATCTCTGAGCTCAAAACTGAGCTCGTGCTTTGAACTGAAAAAGTATGCCCAACGGAAAAATTTTCAAAGCTGTAAAAAATGTTCGGAAGATGTTCTGAGTTATCCAAATTGCTTTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGGAAAAACCAAGAAAGATA</pcr_primer_p1>
		<pcr_primer_p2>ACGTCAGGCTATTTTAAGACTAA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TCTGGAAAAACCAAGAAAGATAGCCGAATTCTGTCAACGCAGTTAAATTCAGCGTGTAGAAAAACCTACGTCTGCAAATTTTCAAACCAATTGAGCCATTTTTGAGCTTACAGGGCTCAAAAATCACTTTTTTGGCCGAGTCATAATTATAGGACCCCCCCCCTGGAAAATGAAAAATCTCAAGTTCTTTAGAGAAAAAAATTGTAATTTTTTCGTTGGAAATTGTTAAATTAGTCTTAAAATAGCCTGACGT</canonical_amplicon>
		<polymorphic_amplicon>TCTGGAAAAACCAAGAAAGATAGCCGAATTCTGTCAACGCAGTTAAATTCAKCGTGTAGAAAAACCTACGTCTGCAAATTTTCAAACCAATTGAGCCATTTTTGAGCTTACAGGGCTCAAAAATCACTTTTTTGGCCGAGTCATAATTATAGGACCCCCCCCCTGGAAAATGAAAAATCTCAAGTTCTTTAGAGAAAAAAATTGTAATTTTTTCGTTGGAAATTGTTAAATTAGTCTTAAAATAGCCTGACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35734</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>241917</contig_pos>
        <strand>+</strand>
        <context>AAAACCTACG[A/T]CTGCAAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGCCGAATTCTGTCAACGCAGTTAAATTCAGCGTGTAGAAAAACCTACG</left_flank>
        <right_flank>CTGCAAATTTTCAAACCAATTGAGCCATTTTTGAGCTTACAGGGCTCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGGAACTCTATTGATTGAAACAAAACTGTATCAAACCAGTGATTATACTGAATCTGTAATTTTTTTTCGATTTAGTTAGACCATGTTTCTCAACAAAATAATGGAAAAATTTATTCGAACTTCATGACAGCTAAATAGCAAGAAATGTAGTCTTCTATTTATCACTGTTTCCACAAGTGCAAGTATATCCAGTCATGGAAGAGTCTCAATACGATTTACTTTCACTGAAATTATCCGTTTTTGTAAAAAATATCAAAAAGTTGTCAACTAACAAAATGTTTATCATAATATCAAAATTATTTTTTTCAGTTTACTATTTTTTTGATATCTCTCACGGTAACAGAGTTAAATTAAGTCAAACTTGATAGTATGAGGGCCCTACTGTAGTGCGCGTTAAAATTATAGGAATCCCCTCCAGAATGAGTGTTCTGGAAAAACCAAGAAAGATAGCCGAATTCTGTCAACGCAGTTAAATTCAGCGTGTAGAAAAACCTACGTCTGCAAATTTTCAAACCAATTGAGCCATTTTTGAGCTTACAGGGCTCAAAAATCACTTTTTTGGCCGAGTCATAATTATAGGACCCCCCCCCTGGAAAATGAAAAATCTCAAGTTCTTTAGAGAAAAAAATTGTAATTTTTTCGTTGGAAATTGTTAAATTAGTCTTAAAATAGCCTGACGTTTTACACATATTTTGATTACTCTAGTCGAGTTTCAAAAAAATTTATTTTCAGACTTTTTCGGGATTTTTAGGGTTTCTGGAGTAAATTGTGAATAACTTTGCTCCTAGGTGAAATTTTTTGCTGAAATTTACAGGGAGCATGTTAACAATGCTCATGATCATGTTGTAAATGTTCAACGCATCTCTGAGCTCAAAACTGAGCTCGTGCTTTGAACTGAAAAAGTATGCCCAACGGAAAAATTTTCAAAGCTGTAAAAAATGTTCGGAAGATGTTCTGAGTTATCCAAATTGCTTTTAAAATCAATCACTTGCACAGAA</canonical>
            <polymorphic>AGAGGAACTCTATTGATTGAAACAAAACTGTATCAAACCAGTGATTATACTGAATCTGTAATTTTTTTTCGATTTAGTTAGACCATGTTTCTCAACAAAATAATGGAAAAATTTATTCGAACTTCATGACAGCTAAATAGCAAGAAATGTAGTCTTCTATTTATCACTGTTTCCACAAGTGCAAGTATATCCAGTCATGGAAGAGTCTCAATACGATTTACTTTCACTGAAATTATCCGTTTTTGTAAAAAATATCAAAAAGTTGTCAACTAACAAAATGTTTATCATAATATCAAAATTATTTTTTTCAGTTTACTATTTTTTTGATATCTCTCACGGTAACAGAGTTAAATTAAGTCAAACTTGATAGTATGAGGGCCCTACTGTAGTGCGCGTTAAAATTATAGGAATCCCCTCCAGAATGAGTGTTCTGGAAAAACCAAGAAAGATAGCCGAATTCTGTCAACGCAGTTAAATTCAGCGTGTAGAAAAACCTACGWCTGCAAATTTTCAAACCAATTGAGCCATTTTTGAGCTTACAGGGCTCAAAAATCACTTTTTTGGCCGAGTCATAATTATAGGACCCCCCCCCTGGAAAATGAAAAATCTCAAGTTCTTTAGAGAAAAAAATTGTAATTTTTTCGTTGGAAATTGTTAAATTAGTCTTAAAATAGCCTGACGTTTTACACATATTTTGATTACTCTAGTCGAGTTTCAAAAAAATTTATTTTCAGACTTTTTCGGGATTTTTAGGGTTTCTGGAGTAAATTGTGAATAACTTTGCTCCTAGGTGAAATTTTTTGCTGAAATTTACAGGGAGCATGTTAACAATGCTCATGATCATGTTGTAAATGTTCAACGCATCTCTGAGCTCAAAACTGAGCTCGTGCTTTGAACTGAAAAAGTATGCCCAACGGAAAAATTTTCAAAGCTGTAAAAAATGTTCGGAAGATGTTCTGAGTTATCCAAATTGCTTTTAAAATCAATCACTTGCACAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>497 321 182</canonical_bands>
                <polymorphic_bands>679 321</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGGAAAAACCAAGAAAGATAG</pcr_primer_p1>
		<pcr_primer_p2>ACGTCAGGCTATTTTAAGACTAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTGGAAAAACCAAGAAAGATAGCCGAATTCTGTCAACGCAGTTAAATTCAGCGTGTAGAAAAACCTACGTCTGCAAATTTTCAAACCAATTGAGCCATTTTTGAGCTTACAGGGCTCAAAAATCACTTTTTTGGCCGAGTCATAATTATAGGACCCCCCCCCTGGAAAATGAAAAATCTCAAGTTCTTTAGAGAAAAAAATTGTAATTTTTTCGTTGGAAATTGTTAAATTAGTCTTAAAATAGCCTGACGT</canonical_amplicon>
		<polymorphic_amplicon>CTGGAAAAACCAAGAAAGATAGCCGAATTCTGTCAACGCAGTTAAATTCAGCGTGTAGAAAAACCTACGWCTGCAAATTTTCAAACCAATTGAGCCATTTTTGAGCTTACAGGGCTCAAAAATCACTTTTTTGGCCGAGTCATAATTATAGGACCCCCCCCCTGGAAAATGAAAAATCTCAAGTTCTTTAGAGAAAAAAATTGTAATTTTTTCGTTGGAAATTGTTAAATTAGTCTTAAAATAGCCTGACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35735</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>242988</contig_pos>
        <strand>-</strand>
        <context>tcctataatt[A/T]tyacgcgcac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTTTCTTGATTTTTCCAGAACACTCATTCGGGAGGGGGGTCCTATAATT</left_flank>
        <right_flank>TGACGCGCACTGTAGTAGAGGGATTACGGTATGTAACTTCAAAGTCGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAGCACAAGCTCAGTTTTGAAGTGCCGGAGCTCAGATATGCGTTGAACATTAAAAACATGATCATGAGCATTGTTAACATGCTCCCTGTAAATTTCAGCAAAAAATTTCACCTAGGAGCAAAGTTATTCACGATTTACTCCAGAAACCCTAAAAAAAAGTCTGAAAATAAAGTTTTCTGAAACTCGACTAAAGTAATCAAAATATGTGTAAAACGTCAGGCTATTTTAAGACTAATTTAACAATTTCCAACGAAAAAATTACAATTTTTTTCTCTAAAGAACTTGAGATTTTTCATTTTCCAGGGGGGGGGGTCCTATTATTATGACTCGGCCAAAAAAGTGATTTTTGAGCCCTGTAAGCTCAAAAATGGCTCAATTGGTTTGAAAATTTGCAGACGTAGGTTTTTCTACACGCTGAATCTAACTGCGTTGACCGAATTCGGCTATCTTTCTTGATTTTTCCAGAACACTCATTCGGGAGGGGGGTCCTATAATTATGACGCGCACTGTAGTAGAGGGATTACGGTATGTAACTTCAAAGTCGTTTAAAAGAATTGTTTAATAGATTCTAGTAATACTTCCAGAGAAACCTATACAAATGGAATGTAGGAATTCTATATCGACCTAAAAATAAAACTGGATCAAACTTCTTGATTTAATGAATCTGTAGTTCCTTTTAAATAACACAAACACAAGAATAATCTAGAATTAGCAGTATGCACCGTCGTGGTCCACNNNNNNNNNNCCAGCTAGTCACGAATCAAAGTATTCACTTTTTTCCTGTTTTTCACATAAATGGTGCAAATTTTCGTATTCTCCAGATGAGGTTGTATCTCTCCGAATATTTAACACAATTGATGCCTGAAAAAATGGACTGGATACTTTGACTTGCCACTAGCTGGCTTTTGGAGGGATGGTACCCACAAGTTACCTGAACATTGCCAACATGTTGTGGATCACGACAGTGCATATTGCTAATTCTGGATTATTCTTGTGT</canonical>
            <polymorphic>TCAAAGCACAAGCTCAGTTTTGAAGTGCCGGAGCTCAGATATGCGTTGAACATTAAAAACATGATCATGAGCATTGTTAACATGCTCCCTGTAAATTTCAGCAAAAAATTTCACCTAGGAGCAAAGTTATTCACGATTTACTCCAGAAACCCTAAAAAAAAGTCTGAAAATAAAGTTTTCTGAAACTCGACTAAAGTAATCAAAATATGTGTAAAACGTCAGGCTATTTTAAGACTAATTTAACAATTTCCAACGAAAAAATTACAATTTTTTTCTCTAAAGAACTTGAGATTTTTCATTTTCCAGGGGGGGGGGTCCTATTATTATGACTCGGCCAAAAAAGTGATTTTTGAGCCCTGTAAGCTCAAAAATGGCTCAATTGGTTTGAAAATTTGCAGACGTAGGTTTTTCTACACGCTGAATCTAACTGCGTTGACCGAATTCGGCTATCTTTCTTGATTTTTCCAGAACACTCATTCGGGAGGGGGGTCCTATAATTWTGACGCGCACTGTAGTAGAGGGATTACGGTATGTAACTTCAAAGTCGTTTAAAAGAATTGTTTAATAGATTCTAGTAATACTTCCAGAGAAACCTATACAAATGGAATGTAGGAATTCTATATCGACCTAAAAATAAAACTGGATCAAACTTCTTGATTTAATGAATCTGTAGTTCCTTTTAAATAACACAAACACAAGAATAATCTAGAATTAGCAGTATGCACCGTCGTGGTCCACNNNNNNNNNNCCAGCTAGTCACGAATCAAAGTATTCACTTTTTTCCTGTTTTTCACATAAATGGTGCAAATTTTCGTATTCTCCAGATGAGGTTGTATCTCTCCGAATATTTAACACAATTGATGCCTGAAAAAATGGACTGGATACTTTGACTTGCCACTAGCTGGCTTTTGGAGGGATGGTACCCACAAGTTACCTGAACATTGCCAACATGTTGTGGATCACGACAGTGCATATTGCTAATTCTGGATTATTCTTGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGCTCAAAAATGGCTCAA</pcr_primer_p1>
		<pcr_primer_p2>TTCCATTTGTATAGGTTTCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TAAGCTCAAAAATGGCTCAATTGGTTTGAAAATTTGCAGACGTAGGTTTTTCTACACGCTGAATCTAACTGCGTTGACCGAATTCGGCTATCTTTCTTGATTTTTCCAGAACACTCATTCGGGAGGGGGGTCCTATAATTATGACGCGCACTGTAGTAGAGGGATTACGGTATGTAACTTCAAAGTCGTTTAAAAGAATTGTTTAATAGATTCTAGTAATACTTCCAGAGAAACCTATACAAATGGAA</canonical_amplicon>
		<polymorphic_amplicon>TAAGCTCAAAAATGGCTCAATTGGTTTGAAAATTTGCAGACGTAGGTTTTTCTACACGCTGAATCTAACTGCGTTGACCGAATTCGGCTATCTTTCTTGATTTTTCCAGAACACTCATTCGGGAGGGGGGTCCTATAATTWTGACGCGCACTGTAGTAGAGGGATTACGGTATGTAACTTCAAAGTCGTTTAAAAGAATTGTTTAATAGATTCTAGTAATACTTCCAGAGAAACCTATACAAATGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35736</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>242990</contig_pos>
        <strand>-</strand>
        <context>ctataattwt[C/T]acgcgcactg</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCTTGATTTTTCCAGAACACTCATTCGGGAGGGGGGTCCTATAATTAT</left_flank>
        <right_flank>ACGCGCACTGTAGTAGAGGGATTACGGTATGTAACTTCAAAGTCGTTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGCACAAGCTCAGTTTTGAAGTGCCGGAGCTCAGATATGCGTTGAACATTAAAAACATGATCATGAGCATTGTTAACATGCTCCCTGTAAATTTCAGCAAAAAATTTCACCTAGGAGCAAAGTTATTCACGATTTACTCCAGAAACCCTAAAAAAAAGTCTGAAAATAAAGTTTTCTGAAACTCGACTAAAGTAATCAAAATATGTGTAAAACGTCAGGCTATTTTAAGACTAATTTAACAATTTCCAACGAAAAAATTACAATTTTTTTCTCTAAAGAACTTGAGATTTTTCATTTTCCAGGGGGGGGGGTCCTATTATTATGACTCGGCCAAAAAAGTGATTTTTGAGCCCTGTAAGCTCAAAAATGGCTCAATTGGTTTGAAAATTTGCAGACGTAGGTTTTTCTACACGCTGAATCTAACTGCGTTGACCGAATTCGGCTATCTTTCTTGATTTTTCCAGAACACTCATTCGGGAGGGGGGTCCTATAATTATGACGCGCACTGTAGTAGAGGGATTACGGTATGTAACTTCAAAGTCGTTTAAAAGAATTGTTTAATAGATTCTAGTAATACTTCCAGAGAAACCTATACAAATGGAATGTAGGAATTCTATATCGACCTAAAAATAAAACTGGATCAAACTTCTTGATTTAATGAATCTGTAGTTCCTTTTAAATAACACAAACACAAGAATAATCTAGAATTAGCAGTATGCACCGTCGTGGTCCACNNNNNNNNNNCCAGCTAGTCACGAATCAAAGTATTCACTTTTTTCCTGTTTTTCACATAAATGGTGCAAATTTTCGTATTCTCCAGATGAGGTTGTATCTCTCCGAATATTTAACACAATTGATGCCTGAAAAAATGGACTGGATACTTTGACTTGCCACTAGCTGGCTTTTGGAGGGATGGTACCCACAAGTTACCTGAACATTGCCAACATGTTGTGGATCACGACAGTGCATATTGCTAATTCTGGATTATTCTTGTGTTT</canonical>
            <polymorphic>AAAGCACAAGCTCAGTTTTGAAGTGCCGGAGCTCAGATATGCGTTGAACATTAAAAACATGATCATGAGCATTGTTAACATGCTCCCTGTAAATTTCAGCAAAAAATTTCACCTAGGAGCAAAGTTATTCACGATTTACTCCAGAAACCCTAAAAAAAAGTCTGAAAATAAAGTTTTCTGAAACTCGACTAAAGTAATCAAAATATGTGTAAAACGTCAGGCTATTTTAAGACTAATTTAACAATTTCCAACGAAAAAATTACAATTTTTTTCTCTAAAGAACTTGAGATTTTTCATTTTCCAGGGGGGGGGGTCCTATTATTATGACTCGGCCAAAAAAGTGATTTTTGAGCCCTGTAAGCTCAAAAATGGCTCAATTGGTTTGAAAATTTGCAGACGTAGGTTTTTCTACACGCTGAATCTAACTGCGTTGACCGAATTCGGCTATCTTTCTTGATTTTTCCAGAACACTCATTCGGGAGGGGGGTCCTATAATTATYACGCGCACTGTAGTAGAGGGATTACGGTATGTAACTTCAAAGTCGTTTAAAAGAATTGTTTAATAGATTCTAGTAATACTTCCAGAGAAACCTATACAAATGGAATGTAGGAATTCTATATCGACCTAAAAATAAAACTGGATCAAACTTCTTGATTTAATGAATCTGTAGTTCCTTTTAAATAACACAAACACAAGAATAATCTAGAATTAGCAGTATGCACCGTCGTGGTCCACNNNNNNNNNNCCAGCTAGTCACGAATCAAAGTATTCACTTTTTTCCTGTTTTTCACATAAATGGTGCAAATTTTCGTATTCTCCAGATGAGGTTGTATCTCTCCGAATATTTAACACAATTGATGCCTGAAAAAATGGACTGGATACTTTGACTTGCCACTAGCTGGCTTTTGGAGGGATGGTACCCACAAGTTACCTGAACATTGCCAACATGTTGTGGATCACGACAGTGCATATTGCTAATTCTGGATTATTCTTGTGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGCTCAAAAATGGCTCAA</pcr_primer_p1>
		<pcr_primer_p2>TTCCATTTGTATAGGTTTCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TAAGCTCAAAAATGGCTCAATTGGTTTGAAAATTTGCAGACGTAGGTTTTTCTACACGCTGAATCTAACTGCGTTGACCGAATTCGGCTATCTTTCTTGATTTTTCCAGAACACTCATTCGGGAGGGGGGTCCTATAATTATGACGCGCACTGTAGTAGAGGGATTACGGTATGTAACTTCAAAGTCGTTTAAAAGAATTGTTTAATAGATTCTAGTAATACTTCCAGAGAAACCTATACAAATGGAA</canonical_amplicon>
		<polymorphic_amplicon>TAAGCTCAAAAATGGCTCAATTGGTTTGAAAATTTGCAGACGTAGGTTTTTCTACACGCTGAATCTAACTGCGTTGACCGAATTCGGCTATCTTTCTTGATTTTTCCAGAACACTCATTCGGGAGGGGGGTCCTATAATTATYACGCGCACTGTAGTAGAGGGATTACGGTATGTAACTTCAAAGTCGTTTAAAAGAATTGTTTAATAGATTCTAGTAATACTTCCAGAGAAACCTATACAAATGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35737</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>258089</contig_pos>
        <strand>+</strand>
        <context>TACTGTTGTC[C/T]GCTATTATGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTGTTTATTTAAAACCAACAATTTTCAGACCACCTCATTTACTGTTGTC</left_flank>
        <right_flank>GCTATTATGGATACAAAAGTTACGAAAGAATCACATCATTGATCTACGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGCAGCATTGAACTTTGTATTGTTTGGTGAAAATGTCGATTTCATGAAGATATGAAAAAAAATAGTCAAAAATCAGTGCATACAGTAATCCTCACACTTGTATGTACGGTACGGTAGTCATACATCCGCAATTTCTGCAAACACAATCACGGCAGAATGCAGACCTAAATTTGCTCTGTCCCTCAATCTCTAAAAGATACTAGAAATGAATAATCTCTAGAATAATGAAGAGTCATTCAATTATGATAAGAAAATCTAGAAATTTCGGAACAAATGAGCTATGCGGTCGCAGCTGGTGATCGGTGTTTACACCTTTTACCTCGGCTACCGTAATCCTTCAGCTAACGCGTACCTCCCATAAGCTTCCCCAGGCTTCCATAGACCAAACATTGGGATGCCCGTTTCAATGTTATCATTTTTCGTCCGTCAGAAATTTTCTTACAATCTGTTGTTTATTTAAAACCAACAATTTTCAGACCACCTCATTTACTGTTGTCTGCTATTATGGATACAAAAGTTACGAAAGAATCACATCATTGATCTACGAAGGAGAGTCAGCGTACACCAGGAATCTACAGAAACAATTATACAAGGCGCTGGTTGTGCAGGTAAGGAAAACGCGCTCCAGCGAACACGAGAAATTTTGCTTCTACTTTTTCGGTGGCTGAGTTCTGAACGTTCTGTTTAGTAGTGACTTTTGCGGTTAGAAAAGTGGAAAAAAAAATGAAATTTCTGGTTAAAAATTCATAATGTTTCATTAATATTTTATCAATAAACTGTTACTGCTTGGAGATAAAACGTAGATGACAACTACAAAATTAAAGCTCTATTTTAGTTTAATATACCTAAAAACGTTAATTTTTATCTAACAAAACCTTGTAGACATTGAAAGTTGGCAATTTTCCACCAAAAAATAAGTAAATTCGTTTTGATCGATTTTTTTGCAGGCAATTATCCCAACCGTCCTAATGTATGCTCCAGTTGGTTCCTATCTAGTC</canonical>
            <polymorphic>AGAGCAGCATTGAACTTTGTATTGTTTGGTGAAAATGTCGATTTCATGAAGATATGAAAAAAAATAGTCAAAAATCAGTGCATACAGTAATCCTCACACTTGTATGTACGGTACGGTAGTCATACATCCGCAATTTCTGCAAACACAATCACGGCAGAATGCAGACCTAAATTTGCTCTGTCCCTCAATCTCTAAAAGATACTAGAAATGAATAATCTCTAGAATAATGAAGAGTCATTCAATTATGATAAGAAAATCTAGAAATTTCGGAACAAATGAGCTATGCGGTCGCAGCTGGTGATCGGTGTTTACACCTTTTACCTCGGCTACCGTAATCCTTCAGCTAACGCGTACCTCCCATAAGCTTCCCCAGGCTTCCATAGACCAAACATTGGGATGCCCGTTTCAATGTTATCATTTTTCGTCCGTCAGAAATTTTCTTACAATCTGTTGTTTATTTAAAACCAACAATTTTCAGACCACCTCATTTACTGTTGTCYGCTATTATGGATACAAAAGTTACGAAAGAATCACATCATTGATCTACGAAGGAGAGTCAGCGTACACCAGGAATCTACAGAAACAATTATACAAGGCGCTGGTTGTGCAGGTAAGGAAAACGCGCTCCAGCGAACACGAGAAATTTTGCTTCTACTTTTTCGGTGGCTGAGTTCTGAACGTTCTGTTTAGTAGTGACTTTTGCGGTTAGAAAAGTGGAAAAAAAAATGAAATTTCTGGTTAAAAATTCATAATGTTTCATTAATATTTTATCAATAAACTGTTACTGCTTGGAGATAAAACGTAGATGACAACTACAAAATTAAAGCTCTATTTTAGTTTAATATACCTAAAAACGTTAATTTTTATCTAACAAAACCTTGTAGACATTGAAAGTTGGCAATTTTCCACCAAAAAATAAGTAAATTCGTTTTGATCGATTTTTTTGCAGGCAATTATCCCAACCGTCCTAATGTATGCTCCAGTTGGTTCCTATCTAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACACCTTTTACCTCGGCTAC</pcr_primer_p1>
		<pcr_primer_p2>TGACTCTCCTTCGTAGATCAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACACCTTTTACCTCGGCTACCGTAATCCTTCAGCTAACGCGTACCTCCCATAAGCTTCCCCAGGCTTCCATAGACCAAACATTGGGATGCCCGTTTCAATGTTATCATTTTTCGTCCGTCAGAAATTTTCTTACAATCTGTTGTTTATTTAAAACCAACAATTTTCAGACCACCTCATTTACTGTTGTCTGCTATTATGGATACAAAAGTTACGAAAGAATCACATCATTGATCTACGAAGGAGAGTCA</canonical_amplicon>
		<polymorphic_amplicon>TACACCTTTTACCTCGGCTACCGTAATCCTTCAGCTAACGCGTACCTCCCATAAGCTTCCCCAGGCTTCCATAGACCAAACATTGGGATGCCCGTTTCAATGTTATCATTTTTCGTCCGTCAGAAATTTTCTTACAATCTGTTGTTTATTTAAAACCAACAATTTTCAGACCACCTCATTTACTGTTGTCYGCTATTATGGATACAAAAGTTACGAAAGAATCACATCATTGATCTACGAAGGAGAGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35738</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>259337</contig_pos>
        <strand>+</strand>
        <context>nGTGCCGCGG[C/T]CTACGTTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGCCACCCTCTAATTGAATGTCACCCTCTANNNNNNNNNNGTGCCGCGG</left_flank>
        <right_flank>CTACGTTTCTCGCTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATGAGATAAATTGGCTCAAAGTTAGAGGGTCAGGTTTAACGGAAGTGTAAATTCTTAAAAAACGAAAAAACGTTTTTACCTCCTAAATATGTTGTTTAAACTGTGGCATTAAAAATGTACAATTCAAAATACCGTAAACACTCTAATATATAGCCCCTCCTAATTGAACGCCACCCTCTAACAGAACGTTCTCTGAGCTGTGCTCCAAAATAAAGAACGCCACCCTCCAATTGAATGCCACCTCTAGAATGCTACCTCAAAAAATAATTTACGATAAACCAGATTATTGAATTGTTGCTTTTTAGAGAGGGTTGGCCACATTGTGAAATGCGCAAGTAGATGATTTTATGACTTTATATCTTGATTATTTCCCACTTTTCGTATTTTCTCAAAATATTCTGAGCATCATCCAAATCTTTGCAAAAAACTTAAGTAACGAATAATAGAGTGCCACCCTCTAATTGAATGTCACCCTCTANNNNNNNNNNGTGCCGCGGTCTACGTTTCTCGCTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGGCGTTTTTCGGGGATTTCGGATTTTTTTTGATTTTTTTCGCAATAATATTCGGAAAATAGATAACTTTTAACACATTTTAATGCAATAAAAATTTTTGGTCGGAGTCCCCTTTAAGAAATGAAACTTTCTACATGTTGTTGAACGAGTGAGAAGTGCTTCGGACGACGTTCTTCAATTTATTGCTAGTTGTTGCATCTCCAAAGTTTCGGAAGAAGGTATATTGAATTATTTTAAGTTTAGTTCATAATTTGTTTGTAGGAGTGCAAAGGTTCTTGTCATCGCACGATGAGGAGTTCGCAAGAAAGGTGAAAGACCTATGGAATGTGAAAAGCAACGCCTATAGCCTTCATCACTTCTGTAATAATTGTGGGAAGAAAACTGGACCGAAAAAAAAGGTAAATCATTTTGTAAGAAATTAATAGAAACAATTT</canonical>
            <polymorphic>AAATGAGATAAATTGGCTCAAAGTTAGAGGGTCAGGTTTAACGGAAGTGTAAATTCTTAAAAAACGAAAAAACGTTTTTACCTCCTAAATATGTTGTTTAAACTGTGGCATTAAAAATGTACAATTCAAAATACCGTAAACACTCTAATATATAGCCCCTCCTAATTGAACGCCACCCTCTAACAGAACGTTCTCTGAGCTGTGCTCCAAAATAAAGAACGCCACCCTCCAATTGAATGCCACCTCTAGAATGCTACCTCAAAAAATAATTTACGATAAACCAGATTATTGAATTGTTGCTTTTTAGAGAGGGTTGGCCACATTGTGAAATGCGCAAGTAGATGATTTTATGACTTTATATCTTGATTATTTCCCACTTTTCGTATTTTCTCAAAATATTCTGAGCATCATCCAAATCTTTGCAAAAAACTTAAGTAACGAATAATAGAGTGCCACCCTCTAATTGAATGTCACCCTCTANNNNNNNNNNGTGCCGCGGYCTACGTTTCTCGCTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGGCGTTTTTCGGGGATTTCGGATTTTTTTTGATTTTTTTCGCAATAATATTCGGAAAATAGATAACTTTTAACACATTTTAATGCAATAAAAATTTTTGGTCGGAGTCCCCTTTAAGAAATGAAACTTTCTACATGTTGTTGAACGAGTGAGAAGTGCTTCGGACGACGTTCTTCAATTTATTGCTAGTTGTTGCATCTCCAAAGTTTCGGAAGAAGGTATATTGAATTATTTTAAGTTTAGTTCATAATTTGTTTGTAGGAGTGCAAAGGTTCTTGTCATCGCACGATGAGGAGTTCGCAAGAAAGGTGAAAGACCTATGGAATGTGAAAAGCAACGCCTATAGCCTTCATCACTTCTGTAATAATTGTGGGAAGAAAACTGGACCGAAAAAAAAGGTAAATCATTTTGTAAGAAATTAATAGAAACAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 363 138</canonical_bands>
                <polymorphic_bands>862 138</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAACTGTGGCATTAAAAATGTA</pcr_primer_p1>
		<pcr_primer_p2>TTGCATTAAAATGTGTTAAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>556</pcr_amplicon_size>
		<canonical_amplicon>TAAACTGTGGCATTAAAAATGTACAATTCAAAATACCGTAAACACTCTAATATATAGCCCCTCCTAATTGAACGCCACCCTCTAACAGAACGTTCTCTGAGCTGTGCTCCAAAATAAAGAACGCCACCCTCCAATTGAATGCCACCTCTAGAATGCTACCTCAAAAAATAATTTACGATAAACCAGATTATTGAATTGTTGCTTTTTAGAGAGGGTTGGCCACATTGTGAAATGCGCAAGTAGATGATTTTATGACTTTATATCTTGATTATTTCCCACTTTTCGTATTTTCTCAAAATATTCTGAGCATCATCCAAATCTTTGCAAAAAACTTAAGTAACGAATAATAGAGTGCCACCCTCTAATTGAATGTCACCCTCTANNNNNNNNNNGTGCCGCGGTCTACGTTTCTCGCTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGGCGTTTTTCGGGGATTTCGGATTTTTTTTGATTTTTTTCGCAATAATATTCGGAAAATAGATAACTTTTAACACATTTTAATGCAA</canonical_amplicon>
		<polymorphic_amplicon>TAAACTGTGGCATTAAAAATGTACAATTCAAAATACCGTAAACACTCTAATATATAGCCCCTCCTAATTGAACGCCACCCTCTAACAGAACGTTCTCTGAGCTGTGCTCCAAAATAAAGAACGCCACCCTCCAATTGAATGCCACCTCTAGAATGCTACCTCAAAAAATAATTTACGATAAACCAGATTATTGAATTGTTGCTTTTTAGAGAGGGTTGGCCACATTGTGAAATGCGCAAGTAGATGATTTTATGACTTTATATCTTGATTATTTCCCACTTTTCGTATTTTCTCAAAATATTCTGAGCATCATCCAAATCTTTGCAAAAAACTTAAGTAACGAATAATAGAGTGCCACCCTCTAATTGAATGTCACCCTCTANNNNNNNNNNGTGCCGCGGYCTACGTTTCTCGCTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGGCGTTTTTCGGGGATTTCGGATTTTTTTTGATTTTTTTCGCAATAATATTCGGAAAATAGATAACTTTTAACACATTTTAATGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35739</snp_id>
        <super_contig>c010101061.Contig3</super_contig>
        <contig_pos>259349</contig_pos>
        <strand>+</strand>
        <context>TACGTTTCTC[A/G]CTGAAAATCC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTGAATGTCACCCTCTANNNNNNNNNNGTGCCGCGGTCTACGTTTCTC</left_flank>
        <right_flank>CTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGCTCAAAGTTAGAGGGTCAGGTTTAACGGAAGTGTAAATTCTTAAAAAACGAAAAAACGTTTTTACCTCCTAAATATGTTGTTTAAACTGTGGCATTAAAAATGTACAATTCAAAATACCGTAAACACTCTAATATATAGCCCCTCCTAATTGAACGCCACCCTCTAACAGAACGTTCTCTGAGCTGTGCTCCAAAATAAAGAACGCCACCCTCCAATTGAATGCCACCTCTAGAATGCTACCTCAAAAAATAATTTACGATAAACCAGATTATTGAATTGTTGCTTTTTAGAGAGGGTTGGCCACATTGTGAAATGCGCAAGTAGATGATTTTATGACTTTATATCTTGATTATTTCCCACTTTTCGTATTTTCTCAAAATATTCTGAGCATCATCCAAATCTTTGCAAAAAACTTAAGTAACGAATAATAGAGTGCCACCCTCTAATTGAATGTCACCCTCTANNNNNNNNNNGTGCCGCGGTCTACGTTTCTCGCTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGGCGTTTTTCGGGGATTTCGGATTTTTTTTGATTTTTTTCGCAATAATATTCGGAAAATAGATAACTTTTAACACATTTTAATGCAATAAAAATTTTTGGTCGGAGTCCCCTTTAAGAAATGAAACTTTCTACATGTTGTTGAACGAGTGAGAAGTGCTTCGGACGACGTTCTTCAATTTATTGCTAGTTGTTGCATCTCCAAAGTTTCGGAAGAAGGTATATTGAATTATTTTAAGTTTAGTTCATAATTTGTTTGTAGGAGTGCAAAGGTTCTTGTCATCGCACGATGAGGAGTTCGCAAGAAAGGTGAAAGACCTATGGAATGTGAAAAGCAACGCCTATAGCCTTCATCACTTCTGTAATAATTGTGGGAAGAAAACTGGACCGAAAAAAAAGGTAAATCATTTTGTAAGAAATTAATAGAAACAATTTCTATTTAGTTGT</canonical>
            <polymorphic>TTGGCTCAAAGTTAGAGGGTCAGGTTTAACGGAAGTGTAAATTCTTAAAAAACGAAAAAACGTTTTTACCTCCTAAATATGTTGTTTAAACTGTGGCATTAAAAATGTACAATTCAAAATACCGTAAACACTCTAATATATAGCCCCTCCTAATTGAACGCCACCCTCTAACAGAACGTTCTCTGAGCTGTGCTCCAAAATAAAGAACGCCACCCTCCAATTGAATGCCACCTCTAGAATGCTACCTCAAAAAATAATTTACGATAAACCAGATTATTGAATTGTTGCTTTTTAGAGAGGGTTGGCCACATTGTGAAATGCGCAAGTAGATGATTTTATGACTTTATATCTTGATTATTTCCCACTTTTCGTATTTTCTCAAAATATTCTGAGCATCATCCAAATCTTTGCAAAAAACTTAAGTAACGAATAATAGAGTGCCACCCTCTAATTGAATGTCACCCTCTANNNNNNNNNNGTGCCGCGGTCTACGTTTCTCRCTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGGCGTTTTTCGGGGATTTCGGATTTTTTTTGATTTTTTTCGCAATAATATTCGGAAAATAGATAACTTTTAACACATTTTAATGCAATAAAAATTTTTGGTCGGAGTCCCCTTTAAGAAATGAAACTTTCTACATGTTGTTGAACGAGTGAGAAGTGCTTCGGACGACGTTCTTCAATTTATTGCTAGTTGTTGCATCTCCAAAGTTTCGGAAGAAGGTATATTGAATTATTTTAAGTTTAGTTCATAATTTGTTTGTAGGAGTGCAAAGGTTCTTGTCATCGCACGATGAGGAGTTCGCAAGAAAGGTGAAAGACCTATGGAATGTGAAAAGCAACGCCTATAGCCTTCATCACTTCTGTAATAATTGTGGGAAGAAAACTGGACCGAAAAAAAAGGTAAATCATTTTGTAAGAAATTAATAGAAACAATTTCTATTTAGTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAACTGTGGCATTAAAAATGTA</pcr_primer_p1>
		<pcr_primer_p2>TTGCATTAAAATGTGTTAAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>556</pcr_amplicon_size>
		<canonical_amplicon>TAAACTGTGGCATTAAAAATGTACAATTCAAAATACCGTAAACACTCTAATATATAGCCCCTCCTAATTGAACGCCACCCTCTAACAGAACGTTCTCTGAGCTGTGCTCCAAAATAAAGAACGCCACCCTCCAATTGAATGCCACCTCTAGAATGCTACCTCAAAAAATAATTTACGATAAACCAGATTATTGAATTGTTGCTTTTTAGAGAGGGTTGGCCACATTGTGAAATGCGCAAGTAGATGATTTTATGACTTTATATCTTGATTATTTCCCACTTTTCGTATTTTCTCAAAATATTCTGAGCATCATCCAAATCTTTGCAAAAAACTTAAGTAACGAATAATAGAGTGCCACCCTCTAATTGAATGTCACCCTCTANNNNNNNNNNGTGCCGCGGTCTACGTTTCTCGCTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGGCGTTTTTCGGGGATTTCGGATTTTTTTTGATTTTTTTCGCAATAATATTCGGAAAATAGATAACTTTTAACACATTTTAATGCAA</canonical_amplicon>
		<polymorphic_amplicon>TAAACTGTGGCATTAAAAATGTACAATTCAAAATACCGTAAACACTCTAATATATAGCCCCTCCTAATTGAACGCCACCCTCTAACAGAACGTTCTCTGAGCTGTGCTCCAAAATAAAGAACGCCACCCTCCAATTGAATGCCACCTCTAGAATGCTACCTCAAAAAATAATTTACGATAAACCAGATTATTGAATTGTTGCTTTTTAGAGAGGGTTGGCCACATTGTGAAATGCGCAAGTAGATGATTTTATGACTTTATATCTTGATTATTTCCCACTTTTCGTATTTTCTCAAAATATTCTGAGCATCATCCAAATCTTTGCAAAAAACTTAAGTAACGAATAATAGAGTGCCACCCTCTAATTGAATGTCACCCTCTANNNNNNNNNNGTGCCGCGGTCTACGTTTCTCRCTGAAAATCCTCGTCCCCCGGCGGCACCTTTTTTTGAATTTTCTTCCTTTTCAACGGCGTTTTTCGGGGATTTCGGATTTTTTTTGATTTTTTTCGCAATAATATTCGGAAAATAGATAACTTTTAACACATTTTAATGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35740</snp_id>
        <super_contig>c010101502.Contig1</super_contig>
        <contig_pos>53811</contig_pos>
        <strand></strand>
        <context>ggccgaggcc[T/G]tgrgtatttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CATGAAAAGAAATTTTCAAGGCTGTGCGAAAATCGGCCGCGGCCGAGGCC</left_flank>
        <right_flank>TGAGTATTTTGCCGTGGACCAATCCGACCGTTCTTTTGAAAATAAGGTCA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACTTTTCCATTGGCTTCTCAACAATCTTCTCTTCTTTCTCCCGGTTCGGATCCTCTTTTTGCTCTTCTTGCCTCATCATCGCTTCCTCTTTTTCTCTATTCTTCTCATTCTGAATTTTCGCTTCCTCTACACTTGATCTTCTAGCTGGTTTCTGCTTCACTGCCTGCTCGTAACTAGGTGGTCGACCTTTCGGATAGTGACGTGGCTGAAAATCCATATTTTGCTTTTTAATTGAGAATAATAGTTTTACCACTGGTTCTCTGCGAGTATTCTGCTGATCTCTAGCTTTTTTCGACTGACAGCATCCCATTTTTTGCGAGATATTTGAGTACTTTTGTTGATCAACTGATTCGAAATAACGATTTGGCGTCAGAGATTTTGAAACTTTGTGGATTCAAGAAGTGGAAACGGCGTGATGCTTCAAGTGTCGTGGTGACATAAATTGAACATGAAAAGAAATTTTCAAGGCTGTGCGAAAATCGGCCGCGGCCGAGGCCTTGAGTATTTTGCCGTGGACCAATCCGACCGTTCTTTTGAAAATAAGGTCAGCTACCCAGGTACTACTAGGGCCGATAGGCCGCCGTACCCTCCCTATCTCAGAAGTATCCTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAGCCTAGGAAATTTTTAACTAGAAAAGAATCGAAATTTTGCATGGAAAAATATTGCCTGGAATCTGAAAGTTTCAAAAAATTACGCACTGAACCAGATTCGGAACATTTTCTGTGGTTTTATATATTTTCAGATCCATTTCCATGATGACATAAATTTCCAAATTTGAAGTTTCTAGGACATCAAAGTTGTTGGTACGTTTTCTAGTCTATTTGCCATTGTGGACTAGAAAACTCAACTTCCAAAACATAAGCCACCATGTTGAGATCGCCTAGAAAACACATCAGGTGCGTGATAATAAATTTTCGGGCAATCCACTACGATGGCCTAGAAAAATACAGTTGAGAAAGTTAGGCCACTA</canonical>
            <polymorphic>TGACTTTTCCATTGGCTTCTCAACAATCTTCTCTTCTTTCTCCCGGTTCGGATCCTCTTTTTGCTCTTCTTGCCTCATCATCGCTTCCTCTTTTTCTCTATTCTTCTCATTCTGAATTTTCGCTTCCTCTACACTTGATCTTCTAGCTGGTTTCTGCTTCACTGCCTGCTCGTAACTAGGTGGTCGACCTTTCGGATAGTGACGTGGCTGAAAATCCATATTTTGCTTTTTAATTGAGAATAATAGTTTTACCACTGGTTCTCTGCGAGTATTCTGCTGATCTCTAGCTTTTTTCGACTGACAGCATCCCATTTTTTGCGAGATATTTGAGTACTTTTGTTGATCAACTGATTCGAAATAACGATTTGGCGTCAGAGATTTTGAAACTTTGTGGATTCAAGAAGTGGAAACGGCGTGATGCTTCAAGTGTCGTGGTGACATAAATTGAACATGAAAAGAAATTTTCAAGGCTGTGCGAAAATCGGCCGCGGCCGAGGCCKTGAGTATTTTGCCGTGGACCAATCCGACCGTTCTTTTGAAAATAAGGTCAGCTACCCAGGTACTACTAGGGCCGATAGGCCGCCGTACCCTCCCTATCTCAGAAGTATCCTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAGCCTAGGAAATTTTTAACTAGAAAAGAATCGAAATTTTGCATGGAAAAATATTGCCTGGAATCTGAAAGTTTCAAAAAATTACGCACTGAACCAGATTCGGAACATTTTCTGTGGTTTTATATATTTTCAGATCCATTTCCATGATGACATAAATTTCCAAATTTGAAGTTTCTAGGACATCAAAGTTGTTGGTACGTTTTCTAGTCTATTTGCCATTGTGGACTAGAAAACTCAACTTCCAAAACATAAGCCACCATGTTGAGATCGCCTAGAAAACACATCAGGTGCGTGATAATAAATTTTCGGGCAATCCACTACGATGGCCTAGAAAAATACAGTTGAGAAAGTTAGGCCACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGGCCT</site>
                <isoschizomers>
                    <enzyme>AatI</enzyme>
                    <enzyme>Eco147I</enzyme>
                    <enzyme>PceI</enzyme>
                    <enzyme>SseBI</enzyme>
                    <enzyme>StuI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>497 468 29 6</canonical_bands>
                <polymorphic_bands>965 29 6</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATAAATTGAACATGAAAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>CAGATTCCAGGCAATATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>ACATAAATTGAACATGAAAAGAAATTTTCAAGGCTGTGCGAAAATCGGCCGCGGCCGAGGCCTTGAGTATTTTGCCGTGGACCAATCCGACCGTTCTTTTGAAAATAAGGTCAGCTACCCAGGTACTACTAGGGCCGATAGGCCGCCGTACCCTCCCTATCTCAGAAGTATCCTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAGCCTAGGAAATTTTTAACTAGAAAAGAATCGAAATTTTGCATGGAAAAATATTGCCTGGAATCTG</canonical_amplicon>
		<polymorphic_amplicon>ACATAAATTGAACATGAAAAGAAATTTTCAAGGCTGTGCGAAAATCGGCCGCGGCCGAGGCCKTGAGTATTTTGCCGTGGACCAATCCGACCGTTCTTTTGAAAATAAGGTCAGCTACCCAGGTACTACTAGGGCCGATAGGCCGCCGTACCCTCCCTATCTCAGAAGTATCCTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAGCCTAGGAAATTTTTAACTAGAAAAGAATCGAAATTTTGCATGGAAAAATATTGCCTGGAATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35741</snp_id>
        <super_contig>c010101502.Contig1</super_contig>
        <contig_pos>53814</contig_pos>
        <strand></strand>
        <context>cgaggccktg[A/G]gtattttgcc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAAGAAATTTTCAAGGCTGTGCGAAAATCGGCCGCGGCCGAGGCCTTG</left_flank>
        <right_flank>GTATTTTGCCGTGGACCAATCCGACCGTTCTTTTGAAAATAAGGTCAGCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTCCATTGGCTTCTCAACAATCTTCTCTTCTTTCTCCCGGTTCGGATCCTCTTTTTGCTCTTCTTGCCTCATCATCGCTTCCTCTTTTTCTCTATTCTTCTCATTCTGAATTTTCGCTTCCTCTACACTTGATCTTCTAGCTGGTTTCTGCTTCACTGCCTGCTCGTAACTAGGTGGTCGACCTTTCGGATAGTGACGTGGCTGAAAATCCATATTTTGCTTTTTAATTGAGAATAATAGTTTTACCACTGGTTCTCTGCGAGTATTCTGCTGATCTCTAGCTTTTTTCGACTGACAGCATCCCATTTTTTGCGAGATATTTGAGTACTTTTGTTGATCAACTGATTCGAAATAACGATTTGGCGTCAGAGATTTTGAAACTTTGTGGATTCAAGAAGTGGAAACGGCGTGATGCTTCAAGTGTCGTGGTGACATAAATTGAACATGAAAAGAAATTTTCAAGGCTGTGCGAAAATCGGCCGCGGCCGAGGCCTTGAGTATTTTGCCGTGGACCAATCCGACCGTTCTTTTGAAAATAAGGTCAGCTACCCAGGTACTACTAGGGCCGATAGGCCGCCGTACCCTCCCTATCTCAGAAGTATCCTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAGCCTAGGAAATTTTTAACTAGAAAAGAATCGAAATTTTGCATGGAAAAATATTGCCTGGAATCTGAAAGTTTCAAAAAATTACGCACTGAACCAGATTCGGAACATTTTCTGTGGTTTTATATATTTTCAGATCCATTTCCATGATGACATAAATTTCCAAATTTGAAGTTTCTAGGACATCAAAGTTGTTGGTACGTTTTCTAGTCTATTTGCCATTGTGGACTAGAAAACTCAACTTCCAAAACATAAGCCACCATGTTGAGATCGCCTAGAAAACACATCAGGTGCGTGATAATAAATTTTCGGGCAATCCACTACGATGGCCTAGAAAAATACAGTTGAGAAAGTTAGGCCACTATCC</canonical>
            <polymorphic>CTTTTCCATTGGCTTCTCAACAATCTTCTCTTCTTTCTCCCGGTTCGGATCCTCTTTTTGCTCTTCTTGCCTCATCATCGCTTCCTCTTTTTCTCTATTCTTCTCATTCTGAATTTTCGCTTCCTCTACACTTGATCTTCTAGCTGGTTTCTGCTTCACTGCCTGCTCGTAACTAGGTGGTCGACCTTTCGGATAGTGACGTGGCTGAAAATCCATATTTTGCTTTTTAATTGAGAATAATAGTTTTACCACTGGTTCTCTGCGAGTATTCTGCTGATCTCTAGCTTTTTTCGACTGACAGCATCCCATTTTTTGCGAGATATTTGAGTACTTTTGTTGATCAACTGATTCGAAATAACGATTTGGCGTCAGAGATTTTGAAACTTTGTGGATTCAAGAAGTGGAAACGGCGTGATGCTTCAAGTGTCGTGGTGACATAAATTGAACATGAAAAGAAATTTTCAAGGCTGTGCGAAAATCGGCCGCGGCCGAGGCCTTGRGTATTTTGCCGTGGACCAATCCGACCGTTCTTTTGAAAATAAGGTCAGCTACCCAGGTACTACTAGGGCCGATAGGCCGCCGTACCCTCCCTATCTCAGAAGTATCCTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAGCCTAGGAAATTTTTAACTAGAAAAGAATCGAAATTTTGCATGGAAAAATATTGCCTGGAATCTGAAAGTTTCAAAAAATTACGCACTGAACCAGATTCGGAACATTTTCTGTGGTTTTATATATTTTCAGATCCATTTCCATGATGACATAAATTTCCAAATTTGAAGTTTCTAGGACATCAAAGTTGTTGGTACGTTTTCTAGTCTATTTGCCATTGTGGACTAGAAAACTCAACTTCCAAAACATAAGCCACCATGTTGAGATCGCCTAGAAAACACATCAGGTGCGTGATAATAAATTTTCGGGCAATCCACTACGATGGCCTAGAAAAATACAGTTGAGAAAGTTAGGCCACTATCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATAAATTGAACATGAAAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>CAGATTCCAGGCAATATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>ACATAAATTGAACATGAAAAGAAATTTTCAAGGCTGTGCGAAAATCGGCCGCGGCCGAGGCCTTGAGTATTTTGCCGTGGACCAATCCGACCGTTCTTTTGAAAATAAGGTCAGCTACCCAGGTACTACTAGGGCCGATAGGCCGCCGTACCCTCCCTATCTCAGAAGTATCCTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAGCCTAGGAAATTTTTAACTAGAAAAGAATCGAAATTTTGCATGGAAAAATATTGCCTGGAATCTG</canonical_amplicon>
		<polymorphic_amplicon>ACATAAATTGAACATGAAAAGAAATTTTCAAGGCTGTGCGAAAATCGGCCGCGGCCGAGGCCTTGRGTATTTTGCCGTGGACCAATCCGACCGTTCTTTTGAAAATAAGGTCAGCTACCCAGGTACTACTAGGGCCGATAGGCCGCCGTACCCTCCCTATCTCAGAAGTATCCTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAGCCTAGGAAATTTTTAACTAGAAAAGAATCGAAATTTTGCATGGAAAAATATTGCCTGGAATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35742</snp_id>
        <super_contig>c010101502.Contig1</super_contig>
        <contig_pos>53903</contig_pos>
        <strand></strand>
        <context>gccgtaccct[C/A]cctatctcag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATAAGGTCAGCTACCCAGGTACTACTAGGGCCGATAGGCCGCCGTACCCT</left_flank>
        <right_flank>CCTATCTCAGAAGTATCCTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTCTATTCTTCTCATTCTGAATTTTCGCTTCCTCTACACTTGATCTTCTAGCTGGTTTCTGCTTCACTGCCTGCTCGTAACTAGGTGGTCGACCTTTCGGATAGTGACGTGGCTGAAAATCCATATTTTGCTTTTTAATTGAGAATAATAGTTTTACCACTGGTTCTCTGCGAGTATTCTGCTGATCTCTAGCTTTTTTCGACTGACAGCATCCCATTTTTTGCGAGATATTTGAGTACTTTTGTTGATCAACTGATTCGAAATAACGATTTGGCGTCAGAGATTTTGAAACTTTGTGGATTCAAGAAGTGGAAACGGCGTGATGCTTCAAGTGTCGTGGTGACATAAATTGAACATGAAAAGAAATTTTCAAGGCTGTGCGAAAATCGGCCGCGGCCGAGGCCTTGAGTATTTTGCCGTGGACCAATCCGACCGTTCTTTTGAAAATAAGGTCAGCTACCCAGGTACTACTAGGGCCGATAGGCCGCCGTACCCTCCCTATCTCAGAAGTATCCTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAGCCTAGGAAATTTTTAACTAGAAAAGAATCGAAATTTTGCATGGAAAAATATTGCCTGGAATCTGAAAGTTTCAAAAAATTACGCACTGAACCAGATTCGGAACATTTTCTGTGGTTTTATATATTTTCAGATCCATTTCCATGATGACATAAATTTCCAAATTTGAAGTTTCTAGGACATCAAAGTTGTTGGTACGTTTTCTAGTCTATTTGCCATTGTGGACTAGAAAACTCAACTTCCAAAACATAAGCCACCATGTTGAGATCGCCTAGAAAACACATCAGGTGCGTGATAATAAATTTTCGGGCAATCCACTACGATGGCCTAGAAAAATACAGTTGAGAAAGTTAGGCCACTATCCTAGGCAAGACAAAAAAAGTCATCTGAAATTCGATGAAGCTGGGGACACAAATTTCCAAAGTCTTCGTTAAATATTGTAGATAAAAATTT</canonical>
            <polymorphic>TTTCTCTATTCTTCTCATTCTGAATTTTCGCTTCCTCTACACTTGATCTTCTAGCTGGTTTCTGCTTCACTGCCTGCTCGTAACTAGGTGGTCGACCTTTCGGATAGTGACGTGGCTGAAAATCCATATTTTGCTTTTTAATTGAGAATAATAGTTTTACCACTGGTTCTCTGCGAGTATTCTGCTGATCTCTAGCTTTTTTCGACTGACAGCATCCCATTTTTTGCGAGATATTTGAGTACTTTTGTTGATCAACTGATTCGAAATAACGATTTGGCGTCAGAGATTTTGAAACTTTGTGGATTCAAGAAGTGGAAACGGCGTGATGCTTCAAGTGTCGTGGTGACATAAATTGAACATGAAAAGAAATTTTCAAGGCTGTGCGAAAATCGGCCGCGGCCGAGGCCTTGAGTATTTTGCCGTGGACCAATCCGACCGTTCTTTTGAAAATAAGGTCAGCTACCCAGGTACTACTAGGGCCGATAGGCCGCCGTACCCTMCCTATCTCAGAAGTATCCTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAGCCTAGGAAATTTTTAACTAGAAAAGAATCGAAATTTTGCATGGAAAAATATTGCCTGGAATCTGAAAGTTTCAAAAAATTACGCACTGAACCAGATTCGGAACATTTTCTGTGGTTTTATATATTTTCAGATCCATTTCCATGATGACATAAATTTCCAAATTTGAAGTTTCTAGGACATCAAAGTTGTTGGTACGTTTTCTAGTCTATTTGCCATTGTGGACTAGAAAACTCAACTTCCAAAACATAAGCCACCATGTTGAGATCGCCTAGAAAACACATCAGGTGCGTGATAATAAATTTTCGGGCAATCCACTACGATGGCCTAGAAAAATACAGTTGAGAAAGTTAGGCCACTATCCTAGGCAAGACAAAAAAAGTCATCTGAAATTCGATGAAGCTGGGGACACAAATTTCCAAAGTCTTCGTTAAATATTGTAGATAAAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATAAATTGAACATGAAAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>CAGATTCCAGGCAATATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>ACATAAATTGAACATGAAAAGAAATTTTCAAGGCTGTGCGAAAATCGGCCGCGGCCGAGGCCTTGAGTATTTTGCCGTGGACCAATCCGACCGTTCTTTTGAAAATAAGGTCAGCTACCCAGGTACTACTAGGGCCGATAGGCCGCCGTACCCTCCCTATCTCAGAAGTATCCTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAGCCTAGGAAATTTTTAACTAGAAAAGAATCGAAATTTTGCATGGAAAAATATTGCCTGGAATCTG</canonical_amplicon>
		<polymorphic_amplicon>ACATAAATTGAACATGAAAAGAAATTTTCAAGGCTGTGCGAAAATCGGCCGCGGCCGAGGCCTTGAGTATTTTGCCGTGGACCAATCCGACCGTTCTTTTGAAAATAAGGTCAGCTACCCAGGTACTACTAGGGCCGATAGGCCGCCGTACCCTMCCTATCTCAGAAGTATCCTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAGCCTAGGAAATTTTTAACTAGAAAAGAATCGAAATTTTGCATGGAAAAATATTGCCTGGAATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35743</snp_id>
        <super_contig>c010101502.Contig1</super_contig>
        <contig_pos>53920</contig_pos>
        <strand>+</strand>
        <context>tcagaagtat[A/T]cttttttgaa</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTACTACTAGGGCCGATAGGCCGCCGTACCCTCCCTATCTCAGAAGTAT</left_flank>
        <right_flank>CTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAGCCTAGGAAATTTTTAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGAATTTTCGCTTCCTCTACACTTGATCTTCTAGCTGGTTTCTGCTTCACTGCCTGCTCGTAACTAGGTGGTCGACCTTTCGGATAGTGACGTGGCTGAAAATCCATATTTTGCTTTTTAATTGAGAATAATAGTTTTACCACTGGTTCTCTGCGAGTATTCTGCTGATCTCTAGCTTTTTTCGACTGACAGCATCCCATTTTTTGCGAGATATTTGAGTACTTTTGTTGATCAACTGATTCGAAATAACGATTTGGCGTCAGAGATTTTGAAACTTTGTGGATTCAAGAAGTGGAAACGGCGTGATGCTTCAAGTGTCGTGGTGACATAAATTGAACATGAAAAGAAATTTTCAAGGCTGTGCGAAAATCGGCCGCGGCCGAGGCCTTGAGTATTTTGCCGTGGACCAATCCGACCGTTCTTTTGAAAATAAGGTCAGCTACCCAGGTACTACTAGGGCCGATAGGCCGCCGTACCCTCCCTATCTCAGAAGTATCCTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAGCCTAGGAAATTTTTAACTAGAAAAGAATCGAAATTTTGCATGGAAAAATATTGCCTGGAATCTGAAAGTTTCAAAAAATTACGCACTGAACCAGATTCGGAACATTTTCTGTGGTTTTATATATTTTCAGATCCATTTCCATGATGACATAAATTTCCAAATTTGAAGTTTCTAGGACATCAAAGTTGTTGGTACGTTTTCTAGTCTATTTGCCATTGTGGACTAGAAAACTCAACTTCCAAAACATAAGCCACCATGTTGAGATCGCCTAGAAAACACATCAGGTGCGTGATAATAAATTTTCGGGCAATCCACTACGATGGCCTAGAAAAATACAGTTGAGAAAGTTAGGCCACTATCCTAGGCAAGACAAAAAAAGTCATCTGAAATTCGATGAAGCTGGGGACACAAATTTCCAAAGTCTTCGTTAAATATTGTAGATAAAAATTTAGGTCAAATTTAGATAA</canonical>
            <polymorphic>TTCTGAATTTTCGCTTCCTCTACACTTGATCTTCTAGCTGGTTTCTGCTTCACTGCCTGCTCGTAACTAGGTGGTCGACCTTTCGGATAGTGACGTGGCTGAAAATCCATATTTTGCTTTTTAATTGAGAATAATAGTTTTACCACTGGTTCTCTGCGAGTATTCTGCTGATCTCTAGCTTTTTTCGACTGACAGCATCCCATTTTTTGCGAGATATTTGAGTACTTTTGTTGATCAACTGATTCGAAATAACGATTTGGCGTCAGAGATTTTGAAACTTTGTGGATTCAAGAAGTGGAAACGGCGTGATGCTTCAAGTGTCGTGGTGACATAAATTGAACATGAAAAGAAATTTTCAAGGCTGTGCGAAAATCGGCCGCGGCCGAGGCCTTGAGTATTTTGCCGTGGACCAATCCGACCGTTCTTTTGAAAATAAGGTCAGCTACCCAGGTACTACTAGGGCCGATAGGCCGCCGTACCCTCCCTATCTCAGAAGTATWCTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAGCCTAGGAAATTTTTAACTAGAAAAGAATCGAAATTTTGCATGGAAAAATATTGCCTGGAATCTGAAAGTTTCAAAAAATTACGCACTGAACCAGATTCGGAACATTTTCTGTGGTTTTATATATTTTCAGATCCATTTCCATGATGACATAAATTTCCAAATTTGAAGTTTCTAGGACATCAAAGTTGTTGGTACGTTTTCTAGTCTATTTGCCATTGTGGACTAGAAAACTCAACTTCCAAAACATAAGCCACCATGTTGAGATCGCCTAGAAAACACATCAGGTGCGTGATAATAAATTTTCGGGCAATCCACTACGATGGCCTAGAAAAATACAGTTGAGAAAGTTAGGCCACTATCCTAGGCAAGACAAAAAAAGTCATCTGAAATTCGATGAAGCTGGGGACACAAATTTCCAAAGTCTTCGTTAAATATTGTAGATAAAAATTTAGGTCAAATTTAGATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATAAATTGAACATGAAAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>CAGATTCCAGGCAATATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>ACATAAATTGAACATGAAAAGAAATTTTCAAGGCTGTGCGAAAATCGGCCGCGGCCGAGGCCTTGAGTATTTTGCCGTGGACCAATCCGACCGTTCTTTTGAAAATAAGGTCAGCTACCCAGGTACTACTAGGGCCGATAGGCCGCCGTACCCTCCCTATCTCAGAAGTATCCTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAGCCTAGGAAATTTTTAACTAGAAAAGAATCGAAATTTTGCATGGAAAAATATTGCCTGGAATCTG</canonical_amplicon>
		<polymorphic_amplicon>ACATAAATTGAACATGAAAAGAAATTTTCAAGGCTGTGCGAAAATCGGCCGCGGCCGAGGCCTTGAGTATTTTGCCGTGGACCAATCCGACCGTTCTTTTGAAAATAAGGTCAGCTACCCAGGTACTACTAGGGCCGATAGGCCGCCGTACCCTCCCTATCTCAGAAGTATWCTTTTTTGAAGTGCTGCGGCCGTTCTGGCACAGCCTAGGAAATTTTTAACTAGAAAAGAATCGAAATTTTGCATGGAAAAATATTGCCTGGAATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35744</snp_id>
        <super_contig>c010101502.Contig1</super_contig>
        <contig_pos>59051</contig_pos>
        <strand>+</strand>
        <context>TCAACTATTC[C/T]TCAGAGATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGATTCTGAAATTCGAAGATTCTGAGATTCTAACATTTTTCAACTATTC</left_flank>
        <right_flank>TCAGAGATTCAAAAAACTCCTCAGAATGTCATTCGCCAATGAGAAACTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCCAAAAAAGGAATAATTGAAAAAGTGGGTGATTAAGAGAACCTGAACGTAGTGACCGCAGCAGTGTTTGTAGGCATGATTGCATCCACATCTTGGATTGTGGACCTGTAATAGAAATAGAGAGATTGTTGGTAATTATGAGAATGTTGACTAACCTCGTTAAACCAGATTGAGATGGAGTCCGAGTAATTGCTGTAAGGTGCCGCCCAGATGTTCTCCCCGACGTTGATACGTCCACGTGAGTGACGGAAGTCACAAGTGTCGGCGTGACGTTGGGCAGATGCTGCCAACTCCTCGGACCAATAGAGCATGTTCATATCAGATGCTGGTACCTGAAAAATTTAGAAATTTTAGGATTCTGAGGTTCTGAGATTTGGAGATTTTCGAGATCATGAGATTCTGAGATTCCGAAACTCTCCATTTCTGAATTCCGAAACTCTAAGATTCTGAGATTCTGAAATTCGAAGATTCTGAGATTCTAACATTTTTCAACTATTCCTCAGAGATTCAAAAAACTCCTCAGAATGTCATTCGCCAATGAGAAACTTGGTATGACTCAACCTATTCTCAGAAAGTTCAACATCTATGAATCATCAATTTCTGATTCATCCAGAATCTTTCGAAACATTCTAGTAATCTCACTCAGCTGAATCAGTAACACCAACTCACCATTCGCCGATACCGATTGTGCTCGTGAACAATCCATTTCTTAAGATACTCGTTCGGATGCTCCGATCGAGCCAGAAGACCACCGTCATTTTGGAAGTTTGAAGGGAAGAAATAGCCACGTTTTTCTCGTTTCACTTCATCATTACTATCGTGTTGAAACTCTGATGCATCATTATCGAGATCGTTGGGGCCAGAGTGTGAAGTTACGGCTTGACCTGTAATTTTAAGCAATTTTCAAATGATCCGAATGTCTATTAGAACTCAGAAAAAGTGAACGGAGTATAATAGGTTTTTCTGAGAATTGTCCTAAACTACAGTATCCTAAATCTT</canonical>
            <polymorphic>AGCCAAAAAAGGAATAATTGAAAAAGTGGGTGATTAAGAGAACCTGAACGTAGTGACCGCAGCAGTGTTTGTAGGCATGATTGCATCCACATCTTGGATTGTGGACCTGTAATAGAAATAGAGAGATTGTTGGTAATTATGAGAATGTTGACTAACCTCGTTAAACCAGATTGAGATGGAGTCCGAGTAATTGCTGTAAGGTGCCGCCCAGATGTTCTCCCCGACGTTGATACGTCCACGTGAGTGACGGAAGTCACAAGTGTCGGCGTGACGTTGGGCAGATGCTGCCAACTCCTCGGACCAATAGAGCATGTTCATATCAGATGCTGGTACCTGAAAAATTTAGAAATTTTAGGATTCTGAGGTTCTGAGATTTGGAGATTTTCGAGATCATGAGATTCTGAGATTCCGAAACTCTCCATTTCTGAATTCCGAAACTCTAAGATTCTGAGATTCTGAAATTCGAAGATTCTGAGATTCTAACATTTTTCAACTATTCYTCAGAGATTCAAAAAACTCCTCAGAATGTCATTCGCCAATGAGAAACTTGGTATGACTCAACCTATTCTCAGAAAGTTCAACATCTATGAATCATCAATTTCTGATTCATCCAGAATCTTTCGAAACATTCTAGTAATCTCACTCAGCTGAATCAGTAACACCAACTCACCATTCGCCGATACCGATTGTGCTCGTGAACAATCCATTTCTTAAGATACTCGTTCGGATGCTCCGATCGAGCCAGAAGACCACCGTCATTTTGGAAGTTTGAAGGGAAGAAATAGCCACGTTTTTCTCGTTTCACTTCATCATTACTATCGTGTTGAAACTCTGATGCATCATTATCGAGATCGTTGGGGCCAGAGTGTGAAGTTACGGCTTGACCTGTAATTTTAAGCAATTTTCAAATGATCCGAATGTCTATTAGAACTCAGAAAAAGTGAACGGAGTATAATAGGTTTTTCTGAGAATTGTCCTAAACTACAGTATCCTAAATCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>360 288 75 48 39 35 34 33 28 24 20 8 8</canonical_bands>
                <polymorphic_bands>360 288 75 48 48 39 35 34 33 24 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATAGAGCATGTTCATATCAGA</pcr_primer_p1>
		<pcr_primer_p2>TGAGTCATACCAAGTTTCTCATT</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>CAATAGAGCATGTTCATATCAGATGCTGGTACCTGAAAAATTTAGAAATTTTAGGATTCTGAGGTTCTGAGATTTGGAGATTTTCGAGATCATGAGATTCTGAGATTCCGAAACTCTCCATTTCTGAATTCCGAAACTCTAAGATTCTGAGATTCTGAAATTCGAAGATTCTGAGATTCTAACATTTTTCAACTATTCCTCAGAGATTCAAAAAACTCCTCAGAATGTCATTCGCCAATGAGAAACTTGGTATGACTCA</canonical_amplicon>
		<polymorphic_amplicon>CAATAGAGCATGTTCATATCAGATGCTGGTACCTGAAAAATTTAGAAATTTTAGGATTCTGAGGTTCTGAGATTTGGAGATTTTCGAGATCATGAGATTCTGAGATTCCGAAACTCTCCATTTCTGAATTCCGAAACTCTAAGATTCTGAGATTCTGAAATTCGAAGATTCTGAGATTCTAACATTTTTCAACTATTCYTCAGAGATTCAAAAAACTCCTCAGAATGTCATTCGCCAATGAGAAACTTGGTATGACTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35745</snp_id>
        <super_contig>c010101502.Contig1</super_contig>
        <contig_pos>100120</contig_pos>
        <strand></strand>
        <context>tttgatcata[T/A]tggttgcgga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAAGCCTTATCTACTCAAAATGTCAGTCGAATTTCTTCTATTTGATCATA</left_flank>
        <right_flank>TGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATCGAATCTTAGATTCTCAGATCCTCCAGATTTATTAAAATGCATTTATTGAGCATTATTTTTCTTCAAAGTTGTTAGCGCAATATTTCGACCATTTCGACCACATTTTTTTATAGCGCACCTTTTCGACCATTTCCCCATTTTTGAAAATTGTTGAAAATGACACATTTTTGAAGAAGTAAGACTTGTTTATGTTAAAAAAAAGCCTTAAAATGGCTTAAAAATGAGAAAATTGAGGATGGGCAAAATGGACACTTCTACGTCCAGCCTAAAAAGTGCCGTTTTTCAAAAATGACTGATTTTCGATGAGCTTAGACACTTTTCTGATGAAAATAAGCGTTAAAATAGCTAAAAAGTGCAAAAAACGTCATTTGGGCAAAATGACCGTCCAGTGACAACCATTTGTATACTACTATAATTTCTGAAAAATTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAATTTCTTCTATTTGATCATATTGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAATATTTGAGTGCTACTGGGTGATTTTCGAAAGACTACGATTCATTGGAGTTTTGGAAGAAATCACTTATTTCGGATTTCAAACGGATATAGGCTACAGAATCTTGTGAATAGACTCATTTTATCATTTGTATGCGTTTAGAATTCATTTTAGCACATTAAAAAAATTTTCGAAAAATTGAAAATTTCGCAAAGGGCATGGCAAACCACCATACCCATGCCCAAACCAAAACCAACCCATACTCAAACCATACCCATGGTAAAAATTTAAAAAAATTTTTTTTTTTGAAAAAAGAGGAAACTTTGTCAGATTGTAGAGAAATCTTTAAAATTGCAATTGCCACTCAAACAATGCCAAAAAACTCCCATTAACCCTTTCAAAAACTCACTCCAAAAGTGAGAAATTAGTACTGAAATCACTTAAACAGCCCATAACTCGACTGTTAG</canonical>
            <polymorphic>TTATCGAATCTTAGATTCTCAGATCCTCCAGATTTATTAAAATGCATTTATTGAGCATTATTTTTCTTCAAAGTTGTTAGCGCAATATTTCGACCATTTCGACCACATTTTTTTATAGCGCACCTTTTCGACCATTTCCCCATTTTTGAAAATTGTTGAAAATGACACATTTTTGAAGAAGTAAGACTTGTTTATGTTAAAAAAAAGCCTTAAAATGGCTTAAAAATGAGAAAATTGAGGATGGGCAAAATGGACACTTCTACGTCCAGCCTAAAAAGTGCCGTTTTTCAAAAATGACTGATTTTCGATGAGCTTAGACACTTTTCTGATGAAAATAAGCGTTAAAATAGCTAAAAAGTGCAAAAAACGTCATTTGGGCAAAATGACCGTCCAGTGACAACCATTTGTATACTACTATAATTTCTGAAAAATTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAATTTCTTCTATTTGATCATAWTGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAATATTTGAGTGCTACTGGGTGATTTTCGAAAGACTACGATTCATTGGAGTTTTGGAAGAAATCACTTATTTCGGATTTCAAACGGATATAGGCTACAGAATCTTGTGAATAGACTCATTTTATCATTTGTATGCGTTTAGAATTCATTTTAGCACATTAAAAAAATTTTCGAAAAATTGAAAATTTCGCAAAGGGCATGGCAAACCACCATACCCATGCCCAAACCAAAACCAACCCATACTCAAACCATACCCATGGTAAAAATTTAAAAAAATTTTTTTTTTTGAAAAAAGAGGAAACTTTGTCAGATTGTAGAGAAATCTTTAAAATTGCAATTGCCACTCAAACAATGCCAAAAAACTCCCATTAACCCTTTCAAAAACTCACTCCAAAAGTGAGAAATTAGTACTGAAATCACTTAAACAGCCCATAACTCGACTGTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAGTGACAACCATTTGTAT</pcr_primer_p1>
		<pcr_primer_p2>GTTTGAGTATGGGTTGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>413</pcr_amplicon_size>
		<canonical_amplicon>TCCAGTGACAACCATTTGTATACTACTATAATTTCTGAAAAATTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAATTTCTTCTATTTGATCATATTGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAATATTTGAGTGCTACTGGGTGATTTTCGAAAGACTACGATTCATTGGAGTTTTGGAAGAAATCACTTATTTCGGATTTCAAACGGATATAGGCTACAGAATCTTGTGAATAGACTCATTTTATCATTTGTATGCGTTTAGAATTCATTTTAGCACATTAAAAAAATTTTCGAAAAATTGAAAATTTCGCAAAGGGCATGGCAAACCACCATACCCATGCCCAAACCAAAACCAACCCATACTCAAAC</canonical_amplicon>
		<polymorphic_amplicon>TCCAGTGACAACCATTTGTATACTACTATAATTTCTGAAAAATTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAATTTCTTCTATTTGATCATAWTGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAATATTTGAGTGCTACTGGGTGATTTTCGAAAGACTACGATTCATTGGAGTTTTGGAAGAAATCACTTATTTCGGATTTCAAACGGATATAGGCTACAGAATCTTGTGAATAGACTCATTTTATCATTTGTATGCGTTTAGAATTCATTTTAGCACATTAAAAAAATTTTCGAAAAATTGAAAATTTCGCAAAGGGCATGGCAAACCACCATACCCATGCCCAAACCAAAACCAACCCATACTCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35746</snp_id>
        <super_contig>c010101502.Contig1</super_contig>
        <contig_pos>100334</contig_pos>
        <strand></strand>
        <context>ttagcacatt[A/T]aaaaaatttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATAGACTCATTTTATCATTTGTATGCGTTTAGAATTCATTTTAGCACATT</left_flank>
        <right_flank>AAAAAATTTTCGAAAAATTGAAAATTTCGCAAAGGGCATGGCAAACCACC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGCTTAAAAATGAGAAAATTGAGGATGGGCAAAATGGACACTTCTACGTCCAGCCTAAAAAGTGCCGTTTTTCAAAAATGACTGATTTTCGATGAGCTTAGACACTTTTCTGATGAAAATAAGCGTTAAAATAGCTAAAAAGTGCAAAAAACGTCATTTGGGCAAAATGACCGTCCAGTGACAACCATTTGTATACTACTATAATTTCTGAAAAATTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAATTTCTTCTATTTGATCATATTGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAATATTTGAGTGCTACTGGGTGATTTTCGAAAGACTACGATTCATTGGAGTTTTGGAAGAAATCACTTATTTCGGATTTCAAACGGATATAGGCTACAGAATCTTGTGAATAGACTCATTTTATCATTTGTATGCGTTTAGAATTCATTTTAGCACATTAAAAAAATTTTCGAAAAATTGAAAATTTCGCAAAGGGCATGGCAAACCACCATACCCATGCCCAAACCAAAACCAACCCATACTCAAACCATACCCATGGTAAAAATTTAAAAAAATTTTTTTTTTTGAAAAAAGAGGAAACTTTGTCAGATTGTAGAGAAATCTTTAAAATTGCAATTGCCACTCAAACAATGCCAAAAAACTCCCATTAACCCTTTCAAAAACTCACTCCAAAAGTGAGAAATTAGTACTGAAATCACTTAAACAGCCCATAACTCGACTGTTAGGAATTTGTGCAGAAAACTGAATACACCACGAGAAAGCCCGTATTTGAAACTATAAATGAGCAAATTTAGAAAAAATTCTGAGATGAAGGCTAAACATGGTTCCCTTGTAAGCCTTCAATTTGAACAAATCCTCTATTTAGCAAATGATCAAAATTTAGCAAATGAAATTTAGCAAGTGAGACTATTTTAGCAAATGAGCGAGTTTAGCAATTAA</canonical>
            <polymorphic>ATGGCTTAAAAATGAGAAAATTGAGGATGGGCAAAATGGACACTTCTACGTCCAGCCTAAAAAGTGCCGTTTTTCAAAAATGACTGATTTTCGATGAGCTTAGACACTTTTCTGATGAAAATAAGCGTTAAAATAGCTAAAAAGTGCAAAAAACGTCATTTGGGCAAAATGACCGTCCAGTGACAACCATTTGTATACTACTATAATTTCTGAAAAATTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAATTTCTTCTATTTGATCATATTGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAATATTTGAGTGCTACTGGGTGATTTTCGAAAGACTACGATTCATTGGAGTTTTGGAAGAAATCACTTATTTCGGATTTCAAACGGATATAGGCTACAGAATCTTGTGAATAGACTCATTTTATCATTTGTATGCGTTTAGAATTCATTTTAGCACATTWAAAAAATTTTCGAAAAATTGAAAATTTCGCAAAGGGCATGGCAAACCACCATACCCATGCCCAAACCAAAACCAACCCATACTCAAACCATACCCATGGTAAAAATTTAAAAAAATTTTTTTTTTTGAAAAAAGAGGAAACTTTGTCAGATTGTAGAGAAATCTTTAAAATTGCAATTGCCACTCAAACAATGCCAAAAAACTCCCATTAACCCTTTCAAAAACTCACTCCAAAAGTGAGAAATTAGTACTGAAATCACTTAAACAGCCCATAACTCGACTGTTAGGAATTTGTGCAGAAAACTGAATACACCACGAGAAAGCCCGTATTTGAAACTATAAATGAGCAAATTTAGAAAAAATTCTGAGATGAAGGCTAAACATGGTTCCCTTGTAAGCCTTCAATTTGAACAAATCCTCTATTTAGCAAATGATCAAAATTTAGCAAATGAAATTTAGCAAGTGAGACTATTTTAGCAAATGAGCGAGTTTAGCAATTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>370 237 122 109 58 52 43 6 3</canonical_bands>
                <polymorphic_bands>479 237 122 58 52 43 6 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCAGTGACAACCATTTGTAT</pcr_primer_p1>
		<pcr_primer_p2>GTTTGAGTATGGGTTGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>413</pcr_amplicon_size>
		<canonical_amplicon>TCCAGTGACAACCATTTGTATACTACTATAATTTCTGAAAAATTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAATTTCTTCTATTTGATCATATTGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAATATTTGAGTGCTACTGGGTGATTTTCGAAAGACTACGATTCATTGGAGTTTTGGAAGAAATCACTTATTTCGGATTTCAAACGGATATAGGCTACAGAATCTTGTGAATAGACTCATTTTATCATTTGTATGCGTTTAGAATTCATTTTAGCACATTAAAAAAATTTTCGAAAAATTGAAAATTTCGCAAAGGGCATGGCAAACCACCATACCCATGCCCAAACCAAAACCAACCCATACTCAAAC</canonical_amplicon>
		<polymorphic_amplicon>TCCAGTGACAACCATTTGTATACTACTATAATTTCTGAAAAATTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAATTTCTTCTATTTGATCATATTGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAATATTTGAGTGCTACTGGGTGATTTTCGAAAGACTACGATTCATTGGAGTTTTGGAAGAAATCACTTATTTCGGATTTCAAACGGATATAGGCTACAGAATCTTGTGAATAGACTCATTTTATCATTTGTATGCGTTTAGAATTCATTTTAGCACATTWAAAAAATTTTCGAAAAATTGAAAATTTCGCAAAGGGCATGGCAAACCACCATACCCATGCCCAAACCAAAACCAACCCATACTCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35747</snp_id>
        <super_contig>c010101502.Contig1</super_contig>
        <contig_pos>100442</contig_pos>
        <strand></strand>
        <context>ggtaaaaatt[T/A]aaaaawwttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGCCCAAACCAAAACCAACCCATACTCAAACCATACCCATGGTAAAAATT</left_flank>
        <right_flank>AAAAAAATTTTTTTTTTTGAAAAAAGAGGAAACTTTGTCAGATTGTAGAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTGATGAAAATAAGCGTTAAAATAGCTAAAAAGTGCAAAAAACGTCATTTGGGCAAAATGACCGTCCAGTGACAACCATTTGTATACTACTATAATTTCTGAAAAATTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAATTTCTTCTATTTGATCATATTGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAATATTTGAGTGCTACTGGGTGATTTTCGAAAGACTACGATTCATTGGAGTTTTGGAAGAAATCACTTATTTCGGATTTCAAACGGATATAGGCTACAGAATCTTGTGAATAGACTCATTTTATCATTTGTATGCGTTTAGAATTCATTTTAGCACATTAAAAAAATTTTCGAAAAATTGAAAATTTCGCAAAGGGCATGGCAAACCACCATACCCATGCCCAAACCAAAACCAACCCATACTCAAACCATACCCATGGTAAAAATTTAAAAAAATTTTTTTTTTTGAAAAAAGAGGAAACTTTGTCAGATTGTAGAGAAATCTTTAAAATTGCAATTGCCACTCAAACAATGCCAAAAAACTCCCATTAACCCTTTCAAAAACTCACTCCAAAAGTGAGAAATTAGTACTGAAATCACTTAAACAGCCCATAACTCGACTGTTAGGAATTTGTGCAGAAAACTGAATACACCACGAGAAAGCCCGTATTTGAAACTATAAATGAGCAAATTTAGAAAAAATTCTGAGATGAAGGCTAAACATGGTTCCCTTGTAAGCCTTCAATTTGAACAAATCCTCTATTTAGCAAATGATCAAAATTTAGCAAATGAAATTTAGCAAGTGAGACTATTTTAGCAAATGAGCGAGTTTAGCAATTAAAAAGTTTAGCAAAATCAAATGATTATTCACTTCCTCCCCTTCCGGAAAAGATTCTTCAAGTCGTTACATACACTTTTTTTCTCAGAATTTCGATTGCTCATTCAATAT</canonical>
            <polymorphic>TTTCTGATGAAAATAAGCGTTAAAATAGCTAAAAAGTGCAAAAAACGTCATTTGGGCAAAATGACCGTCCAGTGACAACCATTTGTATACTACTATAATTTCTGAAAAATTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAATTTCTTCTATTTGATCATATTGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAATATTTGAGTGCTACTGGGTGATTTTCGAAAGACTACGATTCATTGGAGTTTTGGAAGAAATCACTTATTTCGGATTTCAAACGGATATAGGCTACAGAATCTTGTGAATAGACTCATTTTATCATTTGTATGCGTTTAGAATTCATTTTAGCACATTAAAAAAATTTTCGAAAAATTGAAAATTTCGCAAAGGGCATGGCAAACCACCATACCCATGCCCAAACCAAAACCAACCCATACTCAAACCATACCCATGGTAAAAATTWAAAAAAATTTTTTTTTTTGAAAAAAGAGGAAACTTTGTCAGATTGTAGAGAAATCTTTAAAATTGCAATTGCCACTCAAACAATGCCAAAAAACTCCCATTAACCCTTTCAAAAACTCACTCCAAAAGTGAGAAATTAGTACTGAAATCACTTAAACAGCCCATAACTCGACTGTTAGGAATTTGTGCAGAAAACTGAATACACCACGAGAAAGCCCGTATTTGAAACTATAAATGAGCAAATTTAGAAAAAATTCTGAGATGAAGGCTAAACATGGTTCCCTTGTAAGCCTTCAATTTGAACAAATCCTCTATTTAGCAAATGATCAAAATTTAGCAAATGAAATTTAGCAAGTGAGACTATTTTAGCAAATGAGCGAGTTTAGCAATTAAAAAGTTTAGCAAAATCAAATGATTATTCACTTCCTCCCCTTCCGGAAAAGATTCTTCAAGTCGTTACATACACTTTTTTTCTCAGAATTTCGATTGCTCATTCAATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>217 174 134 107 81 78 61 49 23 23 18 14 11 10</canonical_bands>
                <polymorphic_bands>217 174 134 107 91 78 61 49 23 23 18 14 11</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 442 58</canonical_bands>
                <polymorphic_bands>558 442</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>370 237 111 109 58 52 43 20</canonical_bands>
                <polymorphic_bands>370 237 167 111 52 43 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCAGTGACAACCATTTGTAT</pcr_primer_p1>
		<pcr_primer_p2>GAAGGGGAGGAAGTGAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>867</pcr_amplicon_size>
		<canonical_amplicon>TCCAGTGACAACCATTTGTATACTACTATAATTTCTGAAAAATTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAATTTCTTCTATTTGATCATATTGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAATATTTGAGTGCTACTGGGTGATTTTCGAAAGACTACGATTCATTGGAGTTTTGGAAGAAATCACTTATTTCGGATTTCAAACGGATATAGGCTACAGAATCTTGTGAATAGACTCATTTTATCATTTGTATGCGTTTAGAATTCATTTTAGCACATTAAAAAAATTTTCGAAAAATTGAAAATTTCGCAAAGGGCATGGCAAACCACCATACCCATGCCCAAACCAAAACCAACCCATACTCAAACCATACCCATGGTAAAAATTTAAAAAAATTTTTTTTTTTGAAAAAAGAGGAAACTTTGTCAGATTGTAGAGAAATCTTTAAAATTGCAATTGCCACTCAAACAATGCCAAAAAACTCCCATTAACCCTTTCAAAAACTCACTCCAAAAGTGAGAAATTAGTACTGAAATCACTTAAACAGCCCATAACTCGACTGTTAGGAATTTGTGCAGAAAACTGAATACACCACGAGAAAGCCCGTATTTGAAACTATAAATGAGCAAATTTAGAAAAAATTCTGAGATGAAGGCTAAACATGGTTCCCTTGTAAGCCTTCAATTTGAACAAATCCTCTATTTAGCAAATGATCAAAATTTAGCAAATGAAATTTAGCAAGTGAGACTATTTTAGCAAATGAGCGAGTTTAGCAATTAAAAAGTTTAGCAAAATCAAATGATTATTCACTTCCTCCCCTTC</canonical_amplicon>
		<polymorphic_amplicon>TCCAGTGACAACCATTTGTATACTACTATAATTTCTGAAAAATTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAATTTCTTCTATTTGATCATATTGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAATATTTGAGTGCTACTGGGTGATTTTCGAAAGACTACGATTCATTGGAGTTTTGGAAGAAATCACTTATTTCGGATTTCAAACGGATATAGGCTACAGAATCTTGTGAATAGACTCATTTTATCATTTGTATGCGTTTAGAATTCATTTTAGCACATTAAAAAAATTTTCGAAAAATTGAAAATTTCGCAAAGGGCATGGCAAACCACCATACCCATGCCCAAACCAAAACCAACCCATACTCAAACCATACCCATGGTAAAAATTWAAAAAAATTTTTTTTTTTGAAAAAAGAGGAAACTTTGTCAGATTGTAGAGAAATCTTTAAAATTGCAATTGCCACTCAAACAATGCCAAAAAACTCCCATTAACCCTTTCAAAAACTCACTCCAAAAGTGAGAAATTAGTACTGAAATCACTTAAACAGCCCATAACTCGACTGTTAGGAATTTGTGCAGAAAACTGAATACACCACGAGAAAGCCCGTATTTGAAACTATAAATGAGCAAATTTAGAAAAAATTCTGAGATGAAGGCTAAACATGGTTCCCTTGTAAGCCTTCAATTTGAACAAATCCTCTATTTAGCAAATGATCAAAATTTAGCAAATGAAATTTAGCAAGTGAGACTATTTTAGCAAATGAGCGAGTTTAGCAATTAAAAAGTTTAGCAAAATCAAATGATTATTCACTTCCTCCCCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35748</snp_id>
        <super_contig>c010101502.Contig1</super_contig>
        <contig_pos>100448</contig_pos>
        <strand></strand>
        <context>aattwaaaaa[A/T]wttttttttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACCAAAACCAACCCATACTCAAACCATACCCATGGTAAAAATTTAAAAA</left_flank>
        <right_flank>ATTTTTTTTTTTGAAAAAAGAGGAAACTTTGTCAGATTGTAGAGAAATCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAAAATAAGCGTTAAAATAGCTAAAAAGTGCAAAAAACGTCATTTGGGCAAAATGACCGTCCAGTGACAACCATTTGTATACTACTATAATTTCTGAAAAATTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAATTTCTTCTATTTGATCATATTGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAATATTTGAGTGCTACTGGGTGATTTTCGAAAGACTACGATTCATTGGAGTTTTGGAAGAAATCACTTATTTCGGATTTCAAACGGATATAGGCTACAGAATCTTGTGAATAGACTCATTTTATCATTTGTATGCGTTTAGAATTCATTTTAGCACATTAAAAAAATTTTCGAAAAATTGAAAATTTCGCAAAGGGCATGGCAAACCACCATACCCATGCCCAAACCAAAACCAACCCATACTCAAACCATACCCATGGTAAAAATTTAAAAAAATTTTTTTTTTTGAAAAAAGAGGAAACTTTGTCAGATTGTAGAGAAATCTTTAAAATTGCAATTGCCACTCAAACAATGCCAAAAAACTCCCATTAACCCTTTCAAAAACTCACTCCAAAAGTGAGAAATTAGTACTGAAATCACTTAAACAGCCCATAACTCGACTGTTAGGAATTTGTGCAGAAAACTGAATACACCACGAGAAAGCCCGTATTTGAAACTATAAATGAGCAAATTTAGAAAAAATTCTGAGATGAAGGCTAAACATGGTTCCCTTGTAAGCCTTCAATTTGAACAAATCCTCTATTTAGCAAATGATCAAAATTTAGCAAATGAAATTTAGCAAGTGAGACTATTTTAGCAAATGAGCGAGTTTAGCAATTAAAAAGTTTAGCAAAATCAAATGATTATTCACTTCCTCCCCTTCCGGAAAAGATTCTTCAAGTCGTTACATACACTTTTTTTCTCAGAATTTCGATTGCTCATTCAATATTTCCTG</canonical>
            <polymorphic>ATGAAAATAAGCGTTAAAATAGCTAAAAAGTGCAAAAAACGTCATTTGGGCAAAATGACCGTCCAGTGACAACCATTTGTATACTACTATAATTTCTGAAAAATTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAATTTCTTCTATTTGATCATATTGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAATATTTGAGTGCTACTGGGTGATTTTCGAAAGACTACGATTCATTGGAGTTTTGGAAGAAATCACTTATTTCGGATTTCAAACGGATATAGGCTACAGAATCTTGTGAATAGACTCATTTTATCATTTGTATGCGTTTAGAATTCATTTTAGCACATTAAAAAAATTTTCGAAAAATTGAAAATTTCGCAAAGGGCATGGCAAACCACCATACCCATGCCCAAACCAAAACCAACCCATACTCAAACCATACCCATGGTAAAAATTTAAAAAWATTTTTTTTTTTGAAAAAAGAGGAAACTTTGTCAGATTGTAGAGAAATCTTTAAAATTGCAATTGCCACTCAAACAATGCCAAAAAACTCCCATTAACCCTTTCAAAAACTCACTCCAAAAGTGAGAAATTAGTACTGAAATCACTTAAACAGCCCATAACTCGACTGTTAGGAATTTGTGCAGAAAACTGAATACACCACGAGAAAGCCCGTATTTGAAACTATAAATGAGCAAATTTAGAAAAAATTCTGAGATGAAGGCTAAACATGGTTCCCTTGTAAGCCTTCAATTTGAACAAATCCTCTATTTAGCAAATGATCAAAATTTAGCAAATGAAATTTAGCAAGTGAGACTATTTTAGCAAATGAGCGAGTTTAGCAATTAAAAAGTTTAGCAAAATCAAATGATTATTCACTTCCTCCCCTTCCGGAAAAGATTCTTCAAGTCGTTACATACACTTTTTTTCTCAGAATTTCGATTGCTCATTCAATATTTCCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>217 174 134 101 81 78 61 49 29 23 18 14 11 10</canonical_bands>
                <polymorphic_bands>217 184 134 101 81 78 61 49 29 23 18 14 11</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>217 91 90 81 67 61 55 49 46 43 43 35 29 23 14 11 11 11 10 7 6</canonical_bands>
                <polymorphic_bands>217 91 90 81 67 65 61 49 46 43 43 35 29 23 14 11 11 11 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAAAACCAACCCATACTC</pcr_primer_p1>
		<pcr_primer_p2>GAAGGGGAGGAAGTGAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>478</pcr_amplicon_size>
		<canonical_amplicon>ACCAAAACCAACCCATACTCAAACCATACCCATGGTAAAAATTTAAAAAAATTTTTTTTTTTGAAAAAAGAGGAAACTTTGTCAGATTGTAGAGAAATCTTTAAAATTGCAATTGCCACTCAAACAATGCCAAAAAACTCCCATTAACCCTTTCAAAAACTCACTCCAAAAGTGAGAAATTAGTACTGAAATCACTTAAACAGCCCATAACTCGACTGTTAGGAATTTGTGCAGAAAACTGAATACACCACGAGAAAGCCCGTATTTGAAACTATAAATGAGCAAATTTAGAAAAAATTCTGAGATGAAGGCTAAACATGGTTCCCTTGTAAGCCTTCAATTTGAACAAATCCTCTATTTAGCAAATGATCAAAATTTAGCAAATGAAATTTAGCAAGTGAGACTATTTTAGCAAATGAGCGAGTTTAGCAATTAAAAAGTTTAGCAAAATCAAATGATTATTCACTTCCTCCCCTTC</canonical_amplicon>
		<polymorphic_amplicon>ACCAAAACCAACCCATACTCAAACCATACCCATGGTAAAAATTTAAAAAWATTTTTTTTTTTGAAAAAAGAGGAAACTTTGTCAGATTGTAGAGAAATCTTTAAAATTGCAATTGCCACTCAAACAATGCCAAAAAACTCCCATTAACCCTTTCAAAAACTCACTCCAAAAGTGAGAAATTAGTACTGAAATCACTTAAACAGCCCATAACTCGACTGTTAGGAATTTGTGCAGAAAACTGAATACACCACGAGAAAGCCCGTATTTGAAACTATAAATGAGCAAATTTAGAAAAAATTCTGAGATGAAGGCTAAACATGGTTCCCTTGTAAGCCTTCAATTTGAACAAATCCTCTATTTAGCAAATGATCAAAATTTAGCAAATGAAATTTAGCAAGTGAGACTATTTTAGCAAATGAGCGAGTTTAGCAATTAAAAAGTTTAGCAAAATCAAATGATTATTCACTTCCTCCCCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35749</snp_id>
        <super_contig>c010101502.Contig1</super_contig>
        <contig_pos>100449</contig_pos>
        <strand></strand>
        <context>attwaaaaaw[A/T]tttttttttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCAAAACCAACCCATACTCAAACCATACCCATGGTAAAAATTTAAAAAA</left_flank>
        <right_flank>TTTTTTTTTTTGAAAAAAGAGGAAACTTTGTCAGATTGTAGAGAAATCTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAAATAAGCGTTAAAATAGCTAAAAAGTGCAAAAAACGTCATTTGGGCAAAATGACCGTCCAGTGACAACCATTTGTATACTACTATAATTTCTGAAAAATTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAATTTCTTCTATTTGATCATATTGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAATATTTGAGTGCTACTGGGTGATTTTCGAAAGACTACGATTCATTGGAGTTTTGGAAGAAATCACTTATTTCGGATTTCAAACGGATATAGGCTACAGAATCTTGTGAATAGACTCATTTTATCATTTGTATGCGTTTAGAATTCATTTTAGCACATTAAAAAAATTTTCGAAAAATTGAAAATTTCGCAAAGGGCATGGCAAACCACCATACCCATGCCCAAACCAAAACCAACCCATACTCAAACCATACCCATGGTAAAAATTTAAAAAAATTTTTTTTTTTGAAAAAAGAGGAAACTTTGTCAGATTGTAGAGAAATCTTTAAAATTGCAATTGCCACTCAAACAATGCCAAAAAACTCCCATTAACCCTTTCAAAAACTCACTCCAAAAGTGAGAAATTAGTACTGAAATCACTTAAACAGCCCATAACTCGACTGTTAGGAATTTGTGCAGAAAACTGAATACACCACGAGAAAGCCCGTATTTGAAACTATAAATGAGCAAATTTAGAAAAAATTCTGAGATGAAGGCTAAACATGGTTCCCTTGTAAGCCTTCAATTTGAACAAATCCTCTATTTAGCAAATGATCAAAATTTAGCAAATGAAATTTAGCAAGTGAGACTATTTTAGCAAATGAGCGAGTTTAGCAATTAAAAAGTTTAGCAAAATCAAATGATTATTCACTTCCTCCCCTTCCGGAAAAGATTCTTCAAGTCGTTACATACACTTTTTTTCTCAGAATTTCGATTGCTCATTCAATATTTCCTGC</canonical>
            <polymorphic>TGAAAATAAGCGTTAAAATAGCTAAAAAGTGCAAAAAACGTCATTTGGGCAAAATGACCGTCCAGTGACAACCATTTGTATACTACTATAATTTCTGAAAAATTCTTGAAGCACTGCTGAAAAGCCTTATCTACTCAAAATGTCAGTCGAATTTCTTCTATTTGATCATATTGGTTGCGGAACTGTTATAAATCAGTCAAGAAGTATGTAAATCTATGTTTTCACAATATTTGAGTGCTACTGGGTGATTTTCGAAAGACTACGATTCATTGGAGTTTTGGAAGAAATCACTTATTTCGGATTTCAAACGGATATAGGCTACAGAATCTTGTGAATAGACTCATTTTATCATTTGTATGCGTTTAGAATTCATTTTAGCACATTAAAAAAATTTTCGAAAAATTGAAAATTTCGCAAAGGGCATGGCAAACCACCATACCCATGCCCAAACCAAAACCAACCCATACTCAAACCATACCCATGGTAAAAATTTAAAAAAWTTTTTTTTTTTGAAAAAAGAGGAAACTTTGTCAGATTGTAGAGAAATCTTTAAAATTGCAATTGCCACTCAAACAATGCCAAAAAACTCCCATTAACCCTTTCAAAAACTCACTCCAAAAGTGAGAAATTAGTACTGAAATCACTTAAACAGCCCATAACTCGACTGTTAGGAATTTGTGCAGAAAACTGAATACACCACGAGAAAGCCCGTATTTGAAACTATAAATGAGCAAATTTAGAAAAAATTCTGAGATGAAGGCTAAACATGGTTCCCTTGTAAGCCTTCAATTTGAACAAATCCTCTATTTAGCAAATGATCAAAATTTAGCAAATGAAATTTAGCAAGTGAGACTATTTTAGCAAATGAGCGAGTTTAGCAATTAAAAAGTTTAGCAAAATCAAATGATTATTCACTTCCTCCCCTTCCGGAAAAGATTCTTCAAGTCGTTACATACACTTTTTTTCTCAGAATTTCGATTGCTCATTCAATATTTCCTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>217 174 134 100 81 78 61 49 30 23 18 14 11 10</canonical_bands>
                <polymorphic_bands>217 184 134 100 81 78 61 49 30 23 18 14 11</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>217 91 89 81 67 61 55 49 46 43 43 35 30 23 14 11 11 11 10 7 6</canonical_bands>
                <polymorphic_bands>217 91 89 81 67 65 61 49 46 43 43 35 30 23 14 11 11 11 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAAAACCAACCCATACTC</pcr_primer_p1>
		<pcr_primer_p2>GAAGGGGAGGAAGTGAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>478</pcr_amplicon_size>
		<canonical_amplicon>ACCAAAACCAACCCATACTCAAACCATACCCATGGTAAAAATTTAAAAAAATTTTTTTTTTTGAAAAAAGAGGAAACTTTGTCAGATTGTAGAGAAATCTTTAAAATTGCAATTGCCACTCAAACAATGCCAAAAAACTCCCATTAACCCTTTCAAAAACTCACTCCAAAAGTGAGAAATTAGTACTGAAATCACTTAAACAGCCCATAACTCGACTGTTAGGAATTTGTGCAGAAAACTGAATACACCACGAGAAAGCCCGTATTTGAAACTATAAATGAGCAAATTTAGAAAAAATTCTGAGATGAAGGCTAAACATGGTTCCCTTGTAAGCCTTCAATTTGAACAAATCCTCTATTTAGCAAATGATCAAAATTTAGCAAATGAAATTTAGCAAGTGAGACTATTTTAGCAAATGAGCGAGTTTAGCAATTAAAAAGTTTAGCAAAATCAAATGATTATTCACTTCCTCCCCTTC</canonical_amplicon>
		<polymorphic_amplicon>ACCAAAACCAACCCATACTCAAACCATACCCATGGTAAAAATTTAAAAAAWTTTTTTTTTTTGAAAAAAGAGGAAACTTTGTCAGATTGTAGAGAAATCTTTAAAATTGCAATTGCCACTCAAACAATGCCAAAAAACTCCCATTAACCCTTTCAAAAACTCACTCCAAAAGTGAGAAATTAGTACTGAAATCACTTAAACAGCCCATAACTCGACTGTTAGGAATTTGTGCAGAAAACTGAATACACCACGAGAAAGCCCGTATTTGAAACTATAAATGAGCAAATTTAGAAAAAATTCTGAGATGAAGGCTAAACATGGTTCCCTTGTAAGCCTTCAATTTGAACAAATCCTCTATTTAGCAAATGATCAAAATTTAGCAAATGAAATTTAGCAAGTGAGACTATTTTAGCAAATGAGCGAGTTTAGCAATTAAAAAGTTTAGCAAAATCAAATGATTATTCACTTCCTCCCCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35750</snp_id>
        <super_contig>c010101502.Contig1</super_contig>
        <contig_pos>106630</contig_pos>
        <strand>+</strand>
        <context>GATGGTTAAT[A/G]AGGAGATAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCATACGTACAGAAGTACTTCGCTTGCTGCATTGGTTTGATGGTTAAT</left_flank>
        <right_flank>AGGAGATAACTTGGCGGATGCACATATCGAGACGAGATTTTCCCTGATAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGGAATAACGAAAGTTGATGAAGAATAAAAAGTGACATTGAGCTTACATCAACATAAACTCTCTTTACAACACCATAGTCGACAATAAGCACGTCGAATGAAAGGTCCATTATTCCAAGAACGACAGCTTGGCAATTCATTTTACCCGTTGAATGGATAAAAACTCCAAAATAAAGCATCGCAGACTCTTCAGATGCCTCTTTGGATGCTTGCTTGGTATCGTTACAACGGATGCACTGAATTATATAATTTTAAACATAATCAATCAATCTTAACTCCTTACTATATCTTTTATCTCTTTAGGCTTTCGCTCACTCTTTTCCTCATAACCTAGTGAAGCAGCCAACTGGCGATGAACAATGACATCCGGATAACGTCGAATTGGTGATGTGAAATGAGTGTAGTGGTCCACATTCAACGCGTAATGATGGTAGACCTCCAAATCCTTTCCATACGTACAGAAGTACTTCGCTTGCTGCATTGGTTTGATGGTTAATGAGGAGATAACTTGGCGGATGCACATATCGAGACGAGATTTTCCCTGATACTTCCGAAGTGAGGTTGATATCATAGCAGAAGTCTTTCCATCCAGTTGGAATCCAATTCTTTTGCACTGTTCCACAGCATCCTCTATCATTTTCTCTTTAGGTGGCGGGTGGTTTCTAAGTAAAGCGGTATCTGGGAAATGAGTTGCAATCTTCTTGGCAACTTCCATGTTTGCCAGAAGCATAAACTCTTCCACTAGCTTGTTCGAGTCTTTTACCTGCAATATTATAAATTCATTTTATGGCAGACAACTACAAAAATCACTTCATATATCGATACTCCTTGCGGTCTTTTCTCCTCGTCCATCACAAACTTCAGCTTTGGTAGCTCAATACGCAATGCTCCTGAATCCTCTCTTTTTTGTCTCAGAAGCTGCGCAATTCTATGAAGCATCAACGTTTTTTCTTTGATTTCTGATGGCATATTTCCGTCGGAAATTTCGGGTAGTTCGT</canonical>
            <polymorphic>TCTGGAATAACGAAAGTTGATGAAGAATAAAAAGTGACATTGAGCTTACATCAACATAAACTCTCTTTACAACACCATAGTCGACAATAAGCACGTCGAATGAAAGGTCCATTATTCCAAGAACGACAGCTTGGCAATTCATTTTACCCGTTGAATGGATAAAAACTCCAAAATAAAGCATCGCAGACTCTTCAGATGCCTCTTTGGATGCTTGCTTGGTATCGTTACAACGGATGCACTGAATTATATAATTTTAAACATAATCAATCAATCTTAACTCCTTACTATATCTTTTATCTCTTTAGGCTTTCGCTCACTCTTTTCCTCATAACCTAGTGAAGCAGCCAACTGGCGATGAACAATGACATCCGGATAACGTCGAATTGGTGATGTGAAATGAGTGTAGTGGTCCACATTCAACGCGTAATGATGGTAGACCTCCAAATCCTTTCCATACGTACAGAAGTACTTCGCTTGCTGCATTGGTTTGATGGTTAATRAGGAGATAACTTGGCGGATGCACATATCGAGACGAGATTTTCCCTGATACTTCCGAAGTGAGGTTGATATCATAGCAGAAGTCTTTCCATCCAGTTGGAATCCAATTCTTTTGCACTGTTCCACAGCATCCTCTATCATTTTCTCTTTAGGTGGCGGGTGGTTTCTAAGTAAAGCGGTATCTGGGAAATGAGTTGCAATCTTCTTGGCAACTTCCATGTTTGCCAGAAGCATAAACTCTTCCACTAGCTTGTTCGAGTCTTTTACCTGCAATATTATAAATTCATTTTATGGCAGACAACTACAAAAATCACTTCATATATCGATACTCCTTGCGGTCTTTTCTCCTCGTCCATCACAAACTTCAGCTTTGGTAGCTCAATACGCAATGCTCCTGAATCCTCTCTTTTTTGTCTCAGAAGCTGCGCAATTCTATGAAGCATCAACGTTTTTTCTTTGATTTCTGATGGCATATTTCCGTCGGAAATTTCGGGTAGTTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGGTAGACCTCCAAATCCT</pcr_primer_p1>
		<pcr_primer_p2>ATACCGCTTTACTTAGAAACCAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATGGTAGACCTCCAAATCCTTTCCATACGTACAGAAGTACTTCGCTTGCTGCATTGGTTTGATGGTTAATGAGGAGATAACTTGGCGGATGCACATATCGAGACGAGATTTTCCCTGATACTTCCGAAGTGAGGTTGATATCATAGCAGAAGTCTTTCCATCCAGTTGGAATCCAATTCTTTTGCACTGTTCCACAGCATCCTCTATCATTTTCTCTTTAGGTGGCGGGTGGTTTCTAAGTAAAGCGGTAT</canonical_amplicon>
		<polymorphic_amplicon>ATGGTAGACCTCCAAATCCTTTCCATACGTACAGAAGTACTTCGCTTGCTGCATTGGTTTGATGGTTAATRAGGAGATAACTTGGCGGATGCACATATCGAGACGAGATTTTCCCTGATACTTCCGAAGTGAGGTTGATATCATAGCAGAAGTCTTTCCATCCAGTTGGAATCCAATTCTTTTGCACTGTTCCACAGCATCCTCTATCATTTTCTCTTTAGGTGGCGGGTGGTTTCTAAGTAAAGCGGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35751</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>4704</contig_pos>
        <strand></strand>
        <context>AAAACAACCA[A/G]TTTCTCAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATAACTTTTAGCTTTCAAAGGAGGGCGGATATGAAAAAAAAAACAACCA</left_flank>
        <right_flank>TTTCTCAATTGTTTTTTATTCAAGCCTCTCGAGAAATTGAACTTGTAGGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATGTTAAAAACAAGAATTTGTTAATTGATACATTTTCCCTAGCACTGATGGTTTTAAGGTATTGTTGCTTTTAGAGATAAATGCGTTGCGACCGCTGTTGCTCGTTTCCTGTAAAAGGTATCGAAAAGTGGTCAACTAATAAAATAATTTTTGACATTATGATAAACATTTTATTAGTTGACAAATTTTTGATATCATTCACAGCGACCGAGACAAATAGCGTCAAACTAAACGTCCCTTATGTTCTGGGCTTCAACCATGAAAACACTTTAAGCGCTTTTATCCTACGAGAGACGCAAGTTATAAAAATTATGTTAATTTTTACATATATAACAGTTTATGAGCTACATTTTACTAGTTAACAACTTTTTGATAGCTATTCTAATCTTTGAGTTTTGTGCCTTACAAAAAACGACACTTCACAATTCTGGCAGCTTTTCAATTTTTAATAACTTTTAGCTTTCAAAGGAGGGCGGATATGAAAAAAAAAACAACCAATTTCTCAATTGTTTTTTATTCAAGCCTCTCGAGAAATTGAACTTGTAGGACTACCATTGGAGGTGCCGCGTTGATACCAGTTGAGCTACGGTAGTTGCGTCGCCGCGGACGCTGCAAGATAGTTTGTTTTTGAGTCAAGTTATCTCGGTTCCTATGAAAGATATTTAAAAGTTGTCAACTAATAAAATGTTTTTGATATTATGATGAACATTTTGTCAGTTGACTGGTTTTTGATATCTTTTACAGAACATGAGGTAAAATTGTTCAAAACTGGGATCCTTCTCTGTAACGACGATCGTCGGGAAATGAGTATGTATAGGCTTAAAGATAATGATTGAATAAGAGGGATTACGGTATTTCCGCTCCTAAAAATGTGTTTTTCAGTTCGCAATAATCTTCATCCTTCTAATGTCACTACTGCTTGAATTGGCCAACCCATTCATCTTAAAATACATTGAATCCGATGGCACCAAAACGAAAATCAACTCCGCTTTTTTTGG</canonical>
            <polymorphic>GAATGTTAAAAACAAGAATTTGTTAATTGATACATTTTCCCTAGCACTGATGGTTTTAAGGTATTGTTGCTTTTAGAGATAAATGCGTTGCGACCGCTGTTGCTCGTTTCCTGTAAAAGGTATCGAAAAGTGGTCAACTAATAAAATAATTTTTGACATTATGATAAACATTTTATTAGTTGACAAATTTTTGATATCATTCACAGCGACCGAGACAAATAGCGTCAAACTAAACGTCCCTTATGTTCTGGGCTTCAACCATGAAAACACTTTAAGCGCTTTTATCCTACGAGAGACGCAAGTTATAAAAATTATGTTAATTTTTACATATATAACAGTTTATGAGCTACATTTTACTAGTTAACAACTTTTTGATAGCTATTCTAATCTTTGAGTTTTGTGCCTTACAAAAAACGACACTTCACAATTCTGGCAGCTTTTCAATTTTTAATAACTTTTAGCTTTCAAAGGAGGGCGGATATGAAAAAAAAAACAACCARTTTCTCAATTGTTTTTTATTCAAGCCTCTCGAGAAATTGAACTTGTAGGACTACCATTGGAGGTGCCGCGTTGATACCAGTTGAGCTACGGTAGTTGCGTCGCCGCGGACGCTGCAAGATAGTTTGTTTTTGAGTCAAGTTATCTCGGTTCCTATGAAAGATATTTAAAAGTTGTCAACTAATAAAATGTTTTTGATATTATGATGAACATTTTGTCAGTTGACTGGTTTTTGATATCTTTTACAGAACATGAGGTAAAATTGTTCAAAACTGGGATCCTTCTCTGTAACGACGATCGTCGGGAAATGAGTATGTATAGGCTTAAAGATAATGATTGAATAAGAGGGATTACGGTATTTCCGCTCCTAAAAATGTGTTTTTCAGTTCGCAATAATCTTCATCCTTCTAATGTCACTACTGCTTGAATTGGCCAACCCATTCATCTTAAAATACATTGAATCCGATGGCACCAAAACGAAAATCAACTCCGCTTTTTTTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>224 166 124 123 107 76 56 38 28 17 16 9 8 8</canonical_bands>
                <polymorphic_bands>224 166 124 123 107 76 64 38 28 17 16 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCAGCTTTTCAATTTTTAAT</pcr_primer_p1>
		<pcr_primer_p2>TCTTTAAGCCTATACATACTCATTTC</pcr_primer_p2>
		<pcr_amplicon_size>397</pcr_amplicon_size>
		<canonical_amplicon>GGCAGCTTTTCAATTTTTAATAACTTTTAGCTTTCAAAGGAGGGCGGATATGAAAAAAAAAACAACCAATTTCTCAATTGTTTTTTATTCAAGCCTCTCGAGAAATTGAACTTGTAGGACTACCATTGGAGGTGCCGCGTTGATACCAGTTGAGCTACGGTAGTTGCGTCGCCGCGGACGCTGCAAGATAGTTTGTTTTTGAGTCAAGTTATCTCGGTTCCTATGAAAGATATTTAAAAGTTGTCAACTAATAAAATGTTTTTGATATTATGATGAACATTTTGTCAGTTGACTGGTTTTTGATATCTTTTACAGAACATGAGGTAAAATTGTTCAAAACTGGGATCCTTCTCTGTAACGACGATCGTCGGGAAATGAGTATGTATAGGCTTAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GGCAGCTTTTCAATTTTTAATAACTTTTAGCTTTCAAAGGAGGGCGGATATGAAAAAAAAAACAACCARTTTCTCAATTGTTTTTTATTCAAGCCTCTCGAGAAATTGAACTTGTAGGACTACCATTGGAGGTGCCGCGTTGATACCAGTTGAGCTACGGTAGTTGCGTCGCCGCGGACGCTGCAAGATAGTTTGTTTTTGAGTCAAGTTATCTCGGTTCCTATGAAAGATATTTAAAAGTTGTCAACTAATAAAATGTTTTTGATATTATGATGAACATTTTGTCAGTTGACTGGTTTTTGATATCTTTTACAGAACATGAGGTAAAATTGTTCAAAACTGGGATCCTTCTCTGTAACGACGATCGTCGGGAAATGAGTATGTATAGGCTTAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35752</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>4742</contig_pos>
        <strand></strand>
        <context>CTCGAGAAAT[T/C]GAACTTGTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAAAACAACCAATTTCTCAATTGTTTTTTATTCAAGCCTCTCGAGAAAT</left_flank>
        <right_flank>GAACTTGTAGGACTACCATTGGAGGTGCCGCGTTGATACCAGTTGAGCTA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCTAGCACTGATGGTTTTAAGGTATTGTTGCTTTTAGAGATAAATGCGTTGCGACCGCTGTTGCTCGTTTCCTGTAAAAGGTATCGAAAAGTGGTCAACTAATAAAATAATTTTTGACATTATGATAAACATTTTATTAGTTGACAAATTTTTGATATCATTCACAGCGACCGAGACAAATAGCGTCAAACTAAACGTCCCTTATGTTCTGGGCTTCAACCATGAAAACACTTTAAGCGCTTTTATCCTACGAGAGACGCAAGTTATAAAAATTATGTTAATTTTTACATATATAACAGTTTATGAGCTACATTTTACTAGTTAACAACTTTTTGATAGCTATTCTAATCTTTGAGTTTTGTGCCTTACAAAAAACGACACTTCACAATTCTGGCAGCTTTTCAATTTTTAATAACTTTTAGCTTTCAAAGGAGGGCGGATATGAAAAAAAAAACAACCAATTTCTCAATTGTTTTTTATTCAAGCCTCTCGAGAAATTGAACTTGTAGGACTACCATTGGAGGTGCCGCGTTGATACCAGTTGAGCTACGGTAGTTGCGTCGCCGCGGACGCTGCAAGATAGTTTGTTTTTGAGTCAAGTTATCTCGGTTCCTATGAAAGATATTTAAAAGTTGTCAACTAATAAAATGTTTTTGATATTATGATGAACATTTTGTCAGTTGACTGGTTTTTGATATCTTTTACAGAACATGAGGTAAAATTGTTCAAAACTGGGATCCTTCTCTGTAACGACGATCGTCGGGAAATGAGTATGTATAGGCTTAAAGATAATGATTGAATAAGAGGGATTACGGTATTTCCGCTCCTAAAAATGTGTTTTTCAGTTCGCAATAATCTTCATCCTTCTAATGTCACTACTGCTTGAATTGGCCAACCCATTCATCTTAAAATACATTGAATCCGATGGCACCAAAACGAAAATCAACTCCGCTTTTTTTGGCATCACGATTTTTGCCCTTATTGCGACAGCACTTTTTA</canonical>
            <polymorphic>CCCTAGCACTGATGGTTTTAAGGTATTGTTGCTTTTAGAGATAAATGCGTTGCGACCGCTGTTGCTCGTTTCCTGTAAAAGGTATCGAAAAGTGGTCAACTAATAAAATAATTTTTGACATTATGATAAACATTTTATTAGTTGACAAATTTTTGATATCATTCACAGCGACCGAGACAAATAGCGTCAAACTAAACGTCCCTTATGTTCTGGGCTTCAACCATGAAAACACTTTAAGCGCTTTTATCCTACGAGAGACGCAAGTTATAAAAATTATGTTAATTTTTACATATATAACAGTTTATGAGCTACATTTTACTAGTTAACAACTTTTTGATAGCTATTCTAATCTTTGAGTTTTGTGCCTTACAAAAAACGACACTTCACAATTCTGGCAGCTTTTCAATTTTTAATAACTTTTAGCTTTCAAAGGAGGGCGGATATGAAAAAAAAAACAACCAATTTCTCAATTGTTTTTTATTCAAGCCTCTCGAGAAATYGAACTTGTAGGACTACCATTGGAGGTGCCGCGTTGATACCAGTTGAGCTACGGTAGTTGCGTCGCCGCGGACGCTGCAAGATAGTTTGTTTTTGAGTCAAGTTATCTCGGTTCCTATGAAAGATATTTAAAAGTTGTCAACTAATAAAATGTTTTTGATATTATGATGAACATTTTGTCAGTTGACTGGTTTTTGATATCTTTTACAGAACATGAGGTAAAATTGTTCAAAACTGGGATCCTTCTCTGTAACGACGATCGTCGGGAAATGAGTATGTATAGGCTTAAAGATAATGATTGAATAAGAGGGATTACGGTATTTCCGCTCCTAAAAATGTGTTTTTCAGTTCGCAATAATCTTCATCCTTCTAATGTCACTACTGCTTGAATTGGCCAACCCATTCATCTTAAAATACATTGAATCCGATGGCACCAAAACGAAAATCAACTCCGCTTTTTTTGGCATCACGATTTTTGCCCTTATTGCGACAGCACTTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>224 166 124 114 109 107 56 38 28 17 9 8</canonical_bands>
                <polymorphic_bands>252 166 124 114 109 107 56 38 17 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCAGCTTTTCAATTTTTAAT</pcr_primer_p1>
		<pcr_primer_p2>TCTTTAAGCCTATACATACTCATTTC</pcr_primer_p2>
		<pcr_amplicon_size>397</pcr_amplicon_size>
		<canonical_amplicon>GGCAGCTTTTCAATTTTTAATAACTTTTAGCTTTCAAAGGAGGGCGGATATGAAAAAAAAAACAACCAATTTCTCAATTGTTTTTTATTCAAGCCTCTCGAGAAATTGAACTTGTAGGACTACCATTGGAGGTGCCGCGTTGATACCAGTTGAGCTACGGTAGTTGCGTCGCCGCGGACGCTGCAAGATAGTTTGTTTTTGAGTCAAGTTATCTCGGTTCCTATGAAAGATATTTAAAAGTTGTCAACTAATAAAATGTTTTTGATATTATGATGAACATTTTGTCAGTTGACTGGTTTTTGATATCTTTTACAGAACATGAGGTAAAATTGTTCAAAACTGGGATCCTTCTCTGTAACGACGATCGTCGGGAAATGAGTATGTATAGGCTTAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GGCAGCTTTTCAATTTTTAATAACTTTTAGCTTTCAAAGGAGGGCGGATATGAAAAAAAAAACAACCAATTTCTCAATTGTTTTTTATTCAAGCCTCTCGAGAAATYGAACTTGTAGGACTACCATTGGAGGTGCCGCGTTGATACCAGTTGAGCTACGGTAGTTGCGTCGCCGCGGACGCTGCAAGATAGTTTGTTTTTGAGTCAAGTTATCTCGGTTCCTATGAAAGATATTTAAAAGTTGTCAACTAATAAAATGTTTTTGATATTATGATGAACATTTTGTCAGTTGACTGGTTTTTGATATCTTTTACAGAACATGAGGTAAAATTGTTCAAAACTGGGATCCTTCTCTGTAACGACGATCGTCGGGAAATGAGTATGTATAGGCTTAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35753</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>4785</contig_pos>
        <strand></strand>
        <context>TTGATACCAG[T/C]TGAGCTACGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAGAAATTGAACTTGTAGGACTACCATTGGAGGTGCCGCGTTGATACCAG</left_flank>
        <right_flank>TGAGCTACGGTAGTTGCGTCGCCGCGGACGCTGCAAGATAGTTTGTTTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGCGTTGCGACCGCTGTTGCTCGTTTCCTGTAAAAGGTATCGAAAAGTGGTCAACTAATAAAATAATTTTTGACATTATGATAAACATTTTATTAGTTGACAAATTTTTGATATCATTCACAGCGACCGAGACAAATAGCGTCAAACTAAACGTCCCTTATGTTCTGGGCTTCAACCATGAAAACACTTTAAGCGCTTTTATCCTACGAGAGACGCAAGTTATAAAAATTATGTTAATTTTTACATATATAACAGTTTATGAGCTACATTTTACTAGTTAACAACTTTTTGATAGCTATTCTAATCTTTGAGTTTTGTGCCTTACAAAAAACGACACTTCACAATTCTGGCAGCTTTTCAATTTTTAATAACTTTTAGCTTTCAAAGGAGGGCGGATATGAAAAAAAAAACAACCAATTTCTCAATTGTTTTTTATTCAAGCCTCTCGAGAAATTGAACTTGTAGGACTACCATTGGAGGTGCCGCGTTGATACCAGTTGAGCTACGGTAGTTGCGTCGCCGCGGACGCTGCAAGATAGTTTGTTTTTGAGTCAAGTTATCTCGGTTCCTATGAAAGATATTTAAAAGTTGTCAACTAATAAAATGTTTTTGATATTATGATGAACATTTTGTCAGTTGACTGGTTTTTGATATCTTTTACAGAACATGAGGTAAAATTGTTCAAAACTGGGATCCTTCTCTGTAACGACGATCGTCGGGAAATGAGTATGTATAGGCTTAAAGATAATGATTGAATAAGAGGGATTACGGTATTTCCGCTCCTAAAAATGTGTTTTTCAGTTCGCAATAATCTTCATCCTTCTAATGTCACTACTGCTTGAATTGGCCAACCCATTCATCTTAAAATACATTGAATCCGATGGCACCAAAACGAAAATCAACTCCGCTTTTTTTGGCATCACGATTTTTGCCCTTATTGCGACAGCACTTTTTATCAGGAACCAATACACAATGAAGTGAGTTTTGAAAACTTTATT</canonical>
            <polymorphic>AATGCGTTGCGACCGCTGTTGCTCGTTTCCTGTAAAAGGTATCGAAAAGTGGTCAACTAATAAAATAATTTTTGACATTATGATAAACATTTTATTAGTTGACAAATTTTTGATATCATTCACAGCGACCGAGACAAATAGCGTCAAACTAAACGTCCCTTATGTTCTGGGCTTCAACCATGAAAACACTTTAAGCGCTTTTATCCTACGAGAGACGCAAGTTATAAAAATTATGTTAATTTTTACATATATAACAGTTTATGAGCTACATTTTACTAGTTAACAACTTTTTGATAGCTATTCTAATCTTTGAGTTTTGTGCCTTACAAAAAACGACACTTCACAATTCTGGCAGCTTTTCAATTTTTAATAACTTTTAGCTTTCAAAGGAGGGCGGATATGAAAAAAAAAACAACCAATTTCTCAATTGTTTTTTATTCAAGCCTCTCGAGAAATTGAACTTGTAGGACTACCATTGGAGGTGCCGCGTTGATACCAGYTGAGCTACGGTAGTTGCGTCGCCGCGGACGCTGCAAGATAGTTTGTTTTTGAGTCAAGTTATCTCGGTTCCTATGAAAGATATTTAAAAGTTGTCAACTAATAAAATGTTTTTGATATTATGATGAACATTTTGTCAGTTGACTGGTTTTTGATATCTTTTACAGAACATGAGGTAAAATTGTTCAAAACTGGGATCCTTCTCTGTAACGACGATCGTCGGGAAATGAGTATGTATAGGCTTAAAGATAATGATTGAATAAGAGGGATTACGGTATTTCCGCTCCTAAAAATGTGTTTTTCAGTTCGCAATAATCTTCATCCTTCTAATGTCACTACTGCTTGAATTGGCCAACCCATTCATCTTAAAATACATTGAATCCGATGGCACCAAAACGAAAATCAACTCCGCTTTTTTTGGCATCACGATTTTTGCCCTTATTGCGACAGCACTTTTTATCAGGAACCAATACACAATGAAGTGAGTTTTGAAAACTTTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTCAAGCCTCTCGAGAAAT</pcr_primer_p1>
		<pcr_primer_p2>GAAATACCGTAATCCCTCTTATT</pcr_primer_p2>
		<pcr_amplicon_size>344</pcr_amplicon_size>
		<canonical_amplicon>TATTCAAGCCTCTCGAGAAATTGAACTTGTAGGACTACCATTGGAGGTGCCGCGTTGATACCAGTTGAGCTACGGTAGTTGCGTCGCCGCGGACGCTGCAAGATAGTTTGTTTTTGAGTCAAGTTATCTCGGTTCCTATGAAAGATATTTAAAAGTTGTCAACTAATAAAATGTTTTTGATATTATGATGAACATTTTGTCAGTTGACTGGTTTTTGATATCTTTTACAGAACATGAGGTAAAATTGTTCAAAACTGGGATCCTTCTCTGTAACGACGATCGTCGGGAAATGAGTATGTATAGGCTTAAAGATAATGATTGAATAAGAGGGATTACGGTATTTC</canonical_amplicon>
		<polymorphic_amplicon>TATTCAAGCCTCTCGAGAAATTGAACTTGTAGGACTACCATTGGAGGTGCCGCGTTGATACCAGYTGAGCTACGGTAGTTGCGTCGCCGCGGACGCTGCAAGATAGTTTGTTTTTGAGTCAAGTTATCTCGGTTCCTATGAAAGATATTTAAAAGTTGTCAACTAATAAAATGTTTTTGATATTATGATGAACATTTTGTCAGTTGACTGGTTTTTGATATCTTTTACAGAACATGAGGTAAAATTGTTCAAAACTGGGATCCTTCTCTGTAACGACGATCGTCGGGAAATGAGTATGTATAGGCTTAAAGATAATGATTGAATAAGAGGGATTACGGTATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35754</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>4815</contig_pos>
        <strand></strand>
        <context>CGCCGCGGAC[G/A]CTGCAAGATA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGGTGCCGCGTTGATACCAGTTGAGCTACGGTAGTTGCGTCGCCGCGGAC</left_flank>
        <right_flank>CTGCAAGATAGTTTGTTTTTGAGTCAAGTTATCTCGGTTCCTATGAAAGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTAAAAGGTATCGAAAAGTGGTCAACTAATAAAATAATTTTTGACATTATGATAAACATTTTATTAGTTGACAAATTTTTGATATCATTCACAGCGACCGAGACAAATAGCGTCAAACTAAACGTCCCTTATGTTCTGGGCTTCAACCATGAAAACACTTTAAGCGCTTTTATCCTACGAGAGACGCAAGTTATAAAAATTATGTTAATTTTTACATATATAACAGTTTATGAGCTACATTTTACTAGTTAACAACTTTTTGATAGCTATTCTAATCTTTGAGTTTTGTGCCTTACAAAAAACGACACTTCACAATTCTGGCAGCTTTTCAATTTTTAATAACTTTTAGCTTTCAAAGGAGGGCGGATATGAAAAAAAAAACAACCAATTTCTCAATTGTTTTTTATTCAAGCCTCTCGAGAAATTGAACTTGTAGGACTACCATTGGAGGTGCCGCGTTGATACCAGTTGAGCTACGGTAGTTGCGTCGCCGCGGACGCTGCAAGATAGTTTGTTTTTGAGTCAAGTTATCTCGGTTCCTATGAAAGATATTTAAAAGTTGTCAACTAATAAAATGTTTTTGATATTATGATGAACATTTTGTCAGTTGACTGGTTTTTGATATCTTTTACAGAACATGAGGTAAAATTGTTCAAAACTGGGATCCTTCTCTGTAACGACGATCGTCGGGAAATGAGTATGTATAGGCTTAAAGATAATGATTGAATAAGAGGGATTACGGTATTTCCGCTCCTAAAAATGTGTTTTTCAGTTCGCAATAATCTTCATCCTTCTAATGTCACTACTGCTTGAATTGGCCAACCCATTCATCTTAAAATACATTGAATCCGATGGCACCAAAACGAAAATCAACTCCGCTTTTTTTGGCATCACGATTTTTGCCCTTATTGCGACAGCACTTTTTATCAGGAACCAATACACAATGAAGTGAGTTTTGAAAACTTTATTTAATCAAAAAAGTTTTTAAAAATTTCAGAA</canonical>
            <polymorphic>TGTAAAAGGTATCGAAAAGTGGTCAACTAATAAAATAATTTTTGACATTATGATAAACATTTTATTAGTTGACAAATTTTTGATATCATTCACAGCGACCGAGACAAATAGCGTCAAACTAAACGTCCCTTATGTTCTGGGCTTCAACCATGAAAACACTTTAAGCGCTTTTATCCTACGAGAGACGCAAGTTATAAAAATTATGTTAATTTTTACATATATAACAGTTTATGAGCTACATTTTACTAGTTAACAACTTTTTGATAGCTATTCTAATCTTTGAGTTTTGTGCCTTACAAAAAACGACACTTCACAATTCTGGCAGCTTTTCAATTTTTAATAACTTTTAGCTTTCAAAGGAGGGCGGATATGAAAAAAAAAACAACCAATTTCTCAATTGTTTTTTATTCAAGCCTCTCGAGAAATTGAACTTGTAGGACTACCATTGGAGGTGCCGCGTTGATACCAGTTGAGCTACGGTAGTTGCGTCGCCGCGGACRCTGCAAGATAGTTTGTTTTTGAGTCAAGTTATCTCGGTTCCTATGAAAGATATTTAAAAGTTGTCAACTAATAAAATGTTTTTGATATTATGATGAACATTTTGTCAGTTGACTGGTTTTTGATATCTTTTACAGAACATGAGGTAAAATTGTTCAAAACTGGGATCCTTCTCTGTAACGACGATCGTCGGGAAATGAGTATGTATAGGCTTAAAGATAATGATTGAATAAGAGGGATTACGGTATTTCCGCTCCTAAAAATGTGTTTTTCAGTTCGCAATAATCTTCATCCTTCTAATGTCACTACTGCTTGAATTGGCCAACCCATTCATCTTAAAATACATTGAATCCGATGGCACCAAAACGAAAATCAACTCCGCTTTTTTTGGCATCACGATTTTTGCCCTTATTGCGACAGCACTTTTTATCAGGAACCAATACACAATGAAGTGAGTTTTGAAAACTTTATTTAATCAAAAAAGTTTTTAAAAATTTCAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>497 412 91</canonical_bands>
                <polymorphic_bands>500 409 91</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>497 325 132 37 9</canonical_bands>
                <polymorphic_bands>506 325 132 37</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>500 322 178</canonical_bands>
                <polymorphic_bands>678 322</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGGACTACCATTGGAGGTG</pcr_primer_p1>
		<pcr_primer_p2>TCTTTAAGCCTATACATACTCATTTC</pcr_primer_p2>
		<pcr_amplicon_size>283</pcr_amplicon_size>
		<canonical_amplicon>TAGGACTACCATTGGAGGTGCCGCGTTGATACCAGTTGAGCTACGGTAGTTGCGTCGCCGCGGACGCTGCAAGATAGTTTGTTTTTGAGTCAAGTTATCTCGGTTCCTATGAAAGATATTTAAAAGTTGTCAACTAATAAAATGTTTTTGATATTATGATGAACATTTTGTCAGTTGACTGGTTTTTGATATCTTTTACAGAACATGAGGTAAAATTGTTCAAAACTGGGATCCTTCTCTGTAACGACGATCGTCGGGAAATGAGTATGTATAGGCTTAAAGA</canonical_amplicon>
		<polymorphic_amplicon>TAGGACTACCATTGGAGGTGCCGCGTTGATACCAGTTGAGCTACGGTAGTTGCGTCGCCGCGGACRCTGCAAGATAGTTTGTTTTTGAGTCAAGTTATCTCGGTTCCTATGAAAGATATTTAAAAGTTGTCAACTAATAAAATGTTTTTGATATTATGATGAACATTTTGTCAGTTGACTGGTTTTTGATATCTTTTACAGAACATGAGGTAAAATTGTTCAAAACTGGGATCCTTCTCTGTAACGACGATCGTCGGGAAATGAGTATGTATAGGCTTAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35755</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>4897</contig_pos>
        <strand></strand>
        <context>taaaatgttt[T/G]tgatattatg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TCTCGGTTCCTATGAAAGATATTTAAAAGTTGTCAACTAATAAAATGTTT</left_flank>
        <right_flank>TGATATTATGATGAACATTTTGTCAGTTGACTGGTTTTTGATATCTTTTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATCATTCACAGCGACCGAGACAAATAGCGTCAAACTAAACGTCCCTTATGTTCTGGGCTTCAACCATGAAAACACTTTAAGCGCTTTTATCCTACGAGAGACGCAAGTTATAAAAATTATGTTAATTTTTACATATATAACAGTTTATGAGCTACATTTTACTAGTTAACAACTTTTTGATAGCTATTCTAATCTTTGAGTTTTGTGCCTTACAAAAAACGACACTTCACAATTCTGGCAGCTTTTCAATTTTTAATAACTTTTAGCTTTCAAAGGAGGGCGGATATGAAAAAAAAAACAACCAATTTCTCAATTGTTTTTTATTCAAGCCTCTCGAGAAATTGAACTTGTAGGACTACCATTGGAGGTGCCGCGTTGATACCAGTTGAGCTACGGTAGTTGCGTCGCCGCGGACGCTGCAAGATAGTTTGTTTTTGAGTCAAGTTATCTCGGTTCCTATGAAAGATATTTAAAAGTTGTCAACTAATAAAATGTTTTTGATATTATGATGAACATTTTGTCAGTTGACTGGTTTTTGATATCTTTTACAGAACATGAGGTAAAATTGTTCAAAACTGGGATCCTTCTCTGTAACGACGATCGTCGGGAAATGAGTATGTATAGGCTTAAAGATAATGATTGAATAAGAGGGATTACGGTATTTCCGCTCCTAAAAATGTGTTTTTCAGTTCGCAATAATCTTCATCCTTCTAATGTCACTACTGCTTGAATTGGCCAACCCATTCATCTTAAAATACATTGAATCCGATGGCACCAAAACGAAAATCAACTCCGCTTTTTTTGGCATCACGATTTTTGCCCTTATTGCGACAGCACTTTTTATCAGGAACCAATACACAATGAAGTGAGTTTTGAAAACTTTATTTAATCAAAAAAGTTTTTAAAAATTTCAGAAAAGAGCTGGAAAGCAATGAGCTAGATCCGTGCAACGATGAAGCGGAATATGCATATAATTTGGAAAAAATTGAGCAGCTCAA</canonical>
            <polymorphic>ATATCATTCACAGCGACCGAGACAAATAGCGTCAAACTAAACGTCCCTTATGTTCTGGGCTTCAACCATGAAAACACTTTAAGCGCTTTTATCCTACGAGAGACGCAAGTTATAAAAATTATGTTAATTTTTACATATATAACAGTTTATGAGCTACATTTTACTAGTTAACAACTTTTTGATAGCTATTCTAATCTTTGAGTTTTGTGCCTTACAAAAAACGACACTTCACAATTCTGGCAGCTTTTCAATTTTTAATAACTTTTAGCTTTCAAAGGAGGGCGGATATGAAAAAAAAAACAACCAATTTCTCAATTGTTTTTTATTCAAGCCTCTCGAGAAATTGAACTTGTAGGACTACCATTGGAGGTGCCGCGTTGATACCAGTTGAGCTACGGTAGTTGCGTCGCCGCGGACGCTGCAAGATAGTTTGTTTTTGAGTCAAGTTATCTCGGTTCCTATGAAAGATATTTAAAAGTTGTCAACTAATAAAATGTTTKTGATATTATGATGAACATTTTGTCAGTTGACTGGTTTTTGATATCTTTTACAGAACATGAGGTAAAATTGTTCAAAACTGGGATCCTTCTCTGTAACGACGATCGTCGGGAAATGAGTATGTATAGGCTTAAAGATAATGATTGAATAAGAGGGATTACGGTATTTCCGCTCCTAAAAATGTGTTTTTCAGTTCGCAATAATCTTCATCCTTCTAATGTCACTACTGCTTGAATTGGCCAACCCATTCATCTTAAAATACATTGAATCCGATGGCACCAAAACGAAAATCAACTCCGCTTTTTTTGGCATCACGATTTTTGCCCTTATTGCGACAGCACTTTTTATCAGGAACCAATACACAATGAAGTGAGTTTTGAAAACTTTATTTAATCAAAAAAGTTTTTAAAAATTTCAGAAAAGAGCTGGAAAGCAATGAGCTAGATCCGTGCAACGATGAAGCGGAATATGCATATAATTTGGAAAAAATTGAGCAGCTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGGACTACCATTGGAGGTG</pcr_primer_p1>
		<pcr_primer_p2>TCTTTAAGCCTATACATACTCATTTC</pcr_primer_p2>
		<pcr_amplicon_size>283</pcr_amplicon_size>
		<canonical_amplicon>TAGGACTACCATTGGAGGTGCCGCGTTGATACCAGTTGAGCTACGGTAGTTGCGTCGCCGCGGACGCTGCAAGATAGTTTGTTTTTGAGTCAAGTTATCTCGGTTCCTATGAAAGATATTTAAAAGTTGTCAACTAATAAAATGTTTTTGATATTATGATGAACATTTTGTCAGTTGACTGGTTTTTGATATCTTTTACAGAACATGAGGTAAAATTGTTCAAAACTGGGATCCTTCTCTGTAACGACGATCGTCGGGAAATGAGTATGTATAGGCTTAAAGA</canonical_amplicon>
		<polymorphic_amplicon>TAGGACTACCATTGGAGGTGCCGCGTTGATACCAGTTGAGCTACGGTAGTTGCGTCGCCGCGGACGCTGCAAGATAGTTTGTTTTTGAGTCAAGTTATCTCGGTTCCTATGAAAGATATTTAAAAGTTGTCAACTAATAAAATGTTTKTGATATTATGATGAACATTTTGTCAGTTGACTGGTTTTTGATATCTTTTACAGAACATGAGGTAAAATTGTTCAAAACTGGGATCCTTCTCTGTAACGACGATCGTCGGGAAATGAGTATGTATAGGCTTAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35756</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>4977</contig_pos>
        <strand></strand>
        <context>gttcaaaact[G/A]ggatccttct</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACTGGTTTTTGATATCTTTTACAGAACATGAGGTAAAATTGTTCAAAACT</left_flank>
        <right_flank>GGATCCTTCTCTGTAACGACGATCGTCGGGAAATGAGTATGTATAGGCTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCGCTTTTATCCTACGAGAGACGCAAGTTATAAAAATTATGTTAATTTTTACATATATAACAGTTTATGAGCTACATTTTACTAGTTAACAACTTTTTGATAGCTATTCTAATCTTTGAGTTTTGTGCCTTACAAAAAACGACACTTCACAATTCTGGCAGCTTTTCAATTTTTAATAACTTTTAGCTTTCAAAGGAGGGCGGATATGAAAAAAAAAACAACCAATTTCTCAATTGTTTTTTATTCAAGCCTCTCGAGAAATTGAACTTGTAGGACTACCATTGGAGGTGCCGCGTTGATACCAGTTGAGCTACGGTAGTTGCGTCGCCGCGGACGCTGCAAGATAGTTTGTTTTTGAGTCAAGTTATCTCGGTTCCTATGAAAGATATTTAAAAGTTGTCAACTAATAAAATGTTTTTGATATTATGATGAACATTTTGTCAGTTGACTGGTTTTTGATATCTTTTACAGAACATGAGGTAAAATTGTTCAAAACTGGGATCCTTCTCTGTAACGACGATCGTCGGGAAATGAGTATGTATAGGCTTAAAGATAATGATTGAATAAGAGGGATTACGGTATTTCCGCTCCTAAAAATGTGTTTTTCAGTTCGCAATAATCTTCATCCTTCTAATGTCACTACTGCTTGAATTGGCCAACCCATTCATCTTAAAATACATTGAATCCGATGGCACCAAAACGAAAATCAACTCCGCTTTTTTTGGCATCACGATTTTTGCCCTTATTGCGACAGCACTTTTTATCAGGAACCAATACACAATGAAGTGAGTTTTGAAAACTTTATTTAATCAAAAAAGTTTTTAAAAATTTCAGAAAAGAGCTGGAAAGCAATGAGCTAGATCCGTGCAACGATGAAGCGGAATATGCATATAATTTGGAAAAAATTGAGCAGCTCAAATGGAAAATCAAGGATTCTGAAGGAGATAAATCGATTTTGGTAAGTCGGATTATTAAAATTTTAAATTTTAAATTTTTTT</canonical>
            <polymorphic>AAGCGCTTTTATCCTACGAGAGACGCAAGTTATAAAAATTATGTTAATTTTTACATATATAACAGTTTATGAGCTACATTTTACTAGTTAACAACTTTTTGATAGCTATTCTAATCTTTGAGTTTTGTGCCTTACAAAAAACGACACTTCACAATTCTGGCAGCTTTTCAATTTTTAATAACTTTTAGCTTTCAAAGGAGGGCGGATATGAAAAAAAAAACAACCAATTTCTCAATTGTTTTTTATTCAAGCCTCTCGAGAAATTGAACTTGTAGGACTACCATTGGAGGTGCCGCGTTGATACCAGTTGAGCTACGGTAGTTGCGTCGCCGCGGACGCTGCAAGATAGTTTGTTTTTGAGTCAAGTTATCTCGGTTCCTATGAAAGATATTTAAAAGTTGTCAACTAATAAAATGTTTTTGATATTATGATGAACATTTTGTCAGTTGACTGGTTTTTGATATCTTTTACAGAACATGAGGTAAAATTGTTCAAAACTRGGATCCTTCTCTGTAACGACGATCGTCGGGAAATGAGTATGTATAGGCTTAAAGATAATGATTGAATAAGAGGGATTACGGTATTTCCGCTCCTAAAAATGTGTTTTTCAGTTCGCAATAATCTTCATCCTTCTAATGTCACTACTGCTTGAATTGGCCAACCCATTCATCTTAAAATACATTGAATCCGATGGCACCAAAACGAAAATCAACTCCGCTTTTTTTGGCATCACGATTTTTGCCCTTATTGCGACAGCACTTTTTATCAGGAACCAATACACAATGAAGTGAGTTTTGAAAACTTTATTTAATCAAAAAAGTTTTTAAAAATTTCAGAAAAGAGCTGGAAAGCAATGAGCTAGATCCGTGCAACGATGAAGCGGAATATGCATATAATTTGGAAAAAATTGAGCAGCTCAAATGGAAAATCAAGGATTCTGAAGGAGATAAATCGATTTTGGTAAGTCGGATTATTAAAATTTTAAATTTTAAATTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGGACTACCATTGGAGGTG</pcr_primer_p1>
		<pcr_primer_p2>GAAATACCGTAATCCCTCTTATT</pcr_primer_p2>
		<pcr_amplicon_size>315</pcr_amplicon_size>
		<canonical_amplicon>TAGGACTACCATTGGAGGTGCCGCGTTGATACCAGTTGAGCTACGGTAGTTGCGTCGCCGCGGACGCTGCAAGATAGTTTGTTTTTGAGTCAAGTTATCTCGGTTCCTATGAAAGATATTTAAAAGTTGTCAACTAATAAAATGTTTTTGATATTATGATGAACATTTTGTCAGTTGACTGGTTTTTGATATCTTTTACAGAACATGAGGTAAAATTGTTCAAAACTGGGATCCTTCTCTGTAACGACGATCGTCGGGAAATGAGTATGTATAGGCTTAAAGATAATGATTGAATAAGAGGGATTACGGTATTTC</canonical_amplicon>
		<polymorphic_amplicon>TAGGACTACCATTGGAGGTGCCGCGTTGATACCAGTTGAGCTACGGTAGTTGCGTCGCCGCGGACGCTGCAAGATAGTTTGTTTTTGAGTCAAGTTATCTCGGTTCCTATGAAAGATATTTAAAAGTTGTCAACTAATAAAATGTTTTTGATATTATGATGAACATTTTGTCAGTTGACTGGTTTTTGATATCTTTTACAGAACATGAGGTAAAATTGTTCAAAACTRGGATCCTTCTCTGTAACGACGATCGTCGGGAAATGAGTATGTATAGGCTTAAAGATAATGATTGAATAAGAGGGATTACGGTATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35757</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>5041</contig_pos>
        <strand></strand>
        <context>GATAATGATT[G/T]AATAAGAGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAACGACGATCGTCGGGAAATGAGTATGTATAGGCTTAAAGATAATGATT</left_flank>
        <right_flank>AATAAGAGGGATTACGGTATTTCCGCTCCTAAAAATGTGTTTTTCAGTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTATGAGCTACATTTTACTAGTTAACAACTTTTTGATAGCTATTCTAATCTTTGAGTTTTGTGCCTTACAAAAAACGACACTTCACAATTCTGGCAGCTTTTCAATTTTTAATAACTTTTAGCTTTCAAAGGAGGGCGGATATGAAAAAAAAAACAACCAATTTCTCAATTGTTTTTTATTCAAGCCTCTCGAGAAATTGAACTTGTAGGACTACCATTGGAGGTGCCGCGTTGATACCAGTTGAGCTACGGTAGTTGCGTCGCCGCGGACGCTGCAAGATAGTTTGTTTTTGAGTCAAGTTATCTCGGTTCCTATGAAAGATATTTAAAAGTTGTCAACTAATAAAATGTTTTTGATATTATGATGAACATTTTGTCAGTTGACTGGTTTTTGATATCTTTTACAGAACATGAGGTAAAATTGTTCAAAACTGGGATCCTTCTCTGTAACGACGATCGTCGGGAAATGAGTATGTATAGGCTTAAAGATAATGATTGAATAAGAGGGATTACGGTATTTCCGCTCCTAAAAATGTGTTTTTCAGTTCGCAATAATCTTCATCCTTCTAATGTCACTACTGCTTGAATTGGCCAACCCATTCATCTTAAAATACATTGAATCCGATGGCACCAAAACGAAAATCAACTCCGCTTTTTTTGGCATCACGATTTTTGCCCTTATTGCGACAGCACTTTTTATCAGGAACCAATACACAATGAAGTGAGTTTTGAAAACTTTATTTAATCAAAAAAGTTTTTAAAAATTTCAGAAAAGAGCTGGAAAGCAATGAGCTAGATCCGTGCAACGATGAAGCGGAATATGCATATAATTTGGAAAAAATTGAGCAGCTCAAATGGAAAATCAAGGATTCTGAAGGAGATAAATCGATTTTGGTAAGTCGGATTATTAAAATTTTAAATTTTAAATTTTTTTCAGAAAAAGGCCGCCATCATTCTTCTATCCAGCCGTATCCTCATGTTCCTTCAGCCCTATTTGC</canonical>
            <polymorphic>GTTTATGAGCTACATTTTACTAGTTAACAACTTTTTGATAGCTATTCTAATCTTTGAGTTTTGTGCCTTACAAAAAACGACACTTCACAATTCTGGCAGCTTTTCAATTTTTAATAACTTTTAGCTTTCAAAGGAGGGCGGATATGAAAAAAAAAACAACCAATTTCTCAATTGTTTTTTATTCAAGCCTCTCGAGAAATTGAACTTGTAGGACTACCATTGGAGGTGCCGCGTTGATACCAGTTGAGCTACGGTAGTTGCGTCGCCGCGGACGCTGCAAGATAGTTTGTTTTTGAGTCAAGTTATCTCGGTTCCTATGAAAGATATTTAAAAGTTGTCAACTAATAAAATGTTTTTGATATTATGATGAACATTTTGTCAGTTGACTGGTTTTTGATATCTTTTACAGAACATGAGGTAAAATTGTTCAAAACTGGGATCCTTCTCTGTAACGACGATCGTCGGGAAATGAGTATGTATAGGCTTAAAGATAATGATTKAATAAGAGGGATTACGGTATTTCCGCTCCTAAAAATGTGTTTTTCAGTTCGCAATAATCTTCATCCTTCTAATGTCACTACTGCTTGAATTGGCCAACCCATTCATCTTAAAATACATTGAATCCGATGGCACCAAAACGAAAATCAACTCCGCTTTTTTTGGCATCACGATTTTTGCCCTTATTGCGACAGCACTTTTTATCAGGAACCAATACACAATGAAGTGAGTTTTGAAAACTTTATTTAATCAAAAAAGTTTTTAAAAATTTCAGAAAAGAGCTGGAAAGCAATGAGCTAGATCCGTGCAACGATGAAGCGGAATATGCATATAATTTGGAAAAAATTGAGCAGCTCAAATGGAAAATCAAGGATTCTGAAGGAGATAAATCGATTTTGGTAAGTCGGATTATTAAAATTTTAAATTTTAAATTTTTTTCAGAAAAAGGCCGCCATCATTCTTCTATCCAGCCGTATCCTCATGTTCCTTCAGCCCTATTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGGACTACCATTGGAGGTG</pcr_primer_p1>
		<pcr_primer_p2>GCGAACTGAAAAACACATTT</pcr_primer_p2>
		<pcr_amplicon_size>344</pcr_amplicon_size>
		<canonical_amplicon>TAGGACTACCATTGGAGGTGCCGCGTTGATACCAGTTGAGCTACGGTAGTTGCGTCGCCGCGGACGCTGCAAGATAGTTTGTTTTTGAGTCAAGTTATCTCGGTTCCTATGAAAGATATTTAAAAGTTGTCAACTAATAAAATGTTTTTGATATTATGATGAACATTTTGTCAGTTGACTGGTTTTTGATATCTTTTACAGAACATGAGGTAAAATTGTTCAAAACTGGGATCCTTCTCTGTAACGACGATCGTCGGGAAATGAGTATGTATAGGCTTAAAGATAATGATTGAATAAGAGGGATTACGGTATTTCCGCTCCTAAAAATGTGTTTTTCAGTTCGC</canonical_amplicon>
		<polymorphic_amplicon>TAGGACTACCATTGGAGGTGCCGCGTTGATACCAGTTGAGCTACGGTAGTTGCGTCGCCGCGGACGCTGCAAGATAGTTTGTTTTTGAGTCAAGTTATCTCGGTTCCTATGAAAGATATTTAAAAGTTGTCAACTAATAAAATGTTTTTGATATTATGATGAACATTTTGTCAGTTGACTGGTTTTTGATATCTTTTACAGAACATGAGGTAAAATTGTTCAAAACTGGGATCCTTCTCTGTAACGACGATCGTCGGGAAATGAGTATGTATAGGCTTAAAGATAATGATTKAATAAGAGGGATTACGGTATTTCCGCTCCTAAAAATGTGTTTTTCAGTTCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35758</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>5067</contig_pos>
        <strand></strand>
        <context>GGTATTTCCG[C/T]TCCTAAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTATAGGCTTAAAGATAATGATTGAATAAGAGGGATTACGGTATTTCCG</left_flank>
        <right_flank>TCCTAAAAATGTGTTTTTCAGTTCGCAATAATCTTCATCCTTCTAATGTC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAACTTTTTGATAGCTATTCTAATCTTTGAGTTTTGTGCCTTACAAAAAACGACACTTCACAATTCTGGCAGCTTTTCAATTTTTAATAACTTTTAGCTTTCAAAGGAGGGCGGATATGAAAAAAAAAACAACCAATTTCTCAATTGTTTTTTATTCAAGCCTCTCGAGAAATTGAACTTGTAGGACTACCATTGGAGGTGCCGCGTTGATACCAGTTGAGCTACGGTAGTTGCGTCGCCGCGGACGCTGCAAGATAGTTTGTTTTTGAGTCAAGTTATCTCGGTTCCTATGAAAGATATTTAAAAGTTGTCAACTAATAAAATGTTTTTGATATTATGATGAACATTTTGTCAGTTGACTGGTTTTTGATATCTTTTACAGAACATGAGGTAAAATTGTTCAAAACTGGGATCCTTCTCTGTAACGACGATCGTCGGGAAATGAGTATGTATAGGCTTAAAGATAATGATTGAATAAGAGGGATTACGGTATTTCCGCTCCTAAAAATGTGTTTTTCAGTTCGCAATAATCTTCATCCTTCTAATGTCACTACTGCTTGAATTGGCCAACCCATTCATCTTAAAATACATTGAATCCGATGGCACCAAAACGAAAATCAACTCCGCTTTTTTTGGCATCACGATTTTTGCCCTTATTGCGACAGCACTTTTTATCAGGAACCAATACACAATGAAGTGAGTTTTGAAAACTTTATTTAATCAAAAAAGTTTTTAAAAATTTCAGAAAAGAGCTGGAAAGCAATGAGCTAGATCCGTGCAACGATGAAGCGGAATATGCATATAATTTGGAAAAAATTGAGCAGCTCAAATGGAAAATCAAGGATTCTGAAGGAGATAAATCGATTTTGGTAAGTCGGATTATTAAAATTTTAAATTTTAAATTTTTTTCAGAAAAAGGCCGCCATCATTCTTCTATCCAGCCGTATCCTCATGTTCCTTCAGCCCTATTTGCCAACATTTTTCGGTTAAACGGCCAAT</canonical>
            <polymorphic>ACAACTTTTTGATAGCTATTCTAATCTTTGAGTTTTGTGCCTTACAAAAAACGACACTTCACAATTCTGGCAGCTTTTCAATTTTTAATAACTTTTAGCTTTCAAAGGAGGGCGGATATGAAAAAAAAAACAACCAATTTCTCAATTGTTTTTTATTCAAGCCTCTCGAGAAATTGAACTTGTAGGACTACCATTGGAGGTGCCGCGTTGATACCAGTTGAGCTACGGTAGTTGCGTCGCCGCGGACGCTGCAAGATAGTTTGTTTTTGAGTCAAGTTATCTCGGTTCCTATGAAAGATATTTAAAAGTTGTCAACTAATAAAATGTTTTTGATATTATGATGAACATTTTGTCAGTTGACTGGTTTTTGATATCTTTTACAGAACATGAGGTAAAATTGTTCAAAACTGGGATCCTTCTCTGTAACGACGATCGTCGGGAAATGAGTATGTATAGGCTTAAAGATAATGATTGAATAAGAGGGATTACGGTATTTCCGYTCCTAAAAATGTGTTTTTCAGTTCGCAATAATCTTCATCCTTCTAATGTCACTACTGCTTGAATTGGCCAACCCATTCATCTTAAAATACATTGAATCCGATGGCACCAAAACGAAAATCAACTCCGCTTTTTTTGGCATCACGATTTTTGCCCTTATTGCGACAGCACTTTTTATCAGGAACCAATACACAATGAAGTGAGTTTTGAAAACTTTATTTAATCAAAAAAGTTTTTAAAAATTTCAGAAAAGAGCTGGAAAGCAATGAGCTAGATCCGTGCAACGATGAAGCGGAATATGCATATAATTTGGAAAAAATTGAGCAGCTCAAATGGAAAATCAAGGATTCTGAAGGAGATAAATCGATTTTGGTAAGTCGGATTATTAAAATTTTAAATTTTAAATTTTTTTCAGAAAAAGGCCGCCATCATTCTTCTATCCAGCCGTATCCTCATGTTCCTTCAGCCCTATTTGCCAACATTTTTCGGTTAAACGGCCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>296 257 128 111 92 79 37</canonical_bands>
                <polymorphic_bands>385 296 111 92 79 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGGGAAATGAGTATGTATAGG</pcr_primer_p1>
		<pcr_primer_p2>GTATTGGTTCCTGATAAAAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCGGGAAATGAGTATGTATAGGCTTAAAGATAATGATTGAATAAGAGGGATTACGGTATTTCCGCTCCTAAAAATGTGTTTTTCAGTTCGCAATAATCTTCATCCTTCTAATGTCACTACTGCTTGAATTGGCCAACCCATTCATCTTAAAATACATTGAATCCGATGGCACCAAAACGAAAATCAACTCCGCTTTTTTTGGCATCACGATTTTTGCCCTTATTGCGACAGCACTTTTTATCAGGAACCAATAC</canonical_amplicon>
		<polymorphic_amplicon>TCGGGAAATGAGTATGTATAGGCTTAAAGATAATGATTGAATAAGAGGGATTACGGTATTTCCGYTCCTAAAAATGTGTTTTTCAGTTCGCAATAATCTTCATCCTTCTAATGTCACTACTGCTTGAATTGGCCAACCCATTCATCTTAAAATACATTGAATCCGATGGCACCAAAACGAAAATCAACTCCGCTTTTTTTGGCATCACGATTTTTGCCCTTATTGCGACAGCACTTTTTATCAGGAACCAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35759</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>21247</contig_pos>
        <strand>+</strand>
        <context>CATCACTTGC[A/G]TCCACATGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATTATTCAGAATCTGTTCTGGTATTAGTGTTAATTGCTCATCACTTGC</left_flank>
        <right_flank>TCCACATGATTGCTTTTCTCCACTTGTTGGGCTCTCGAAAACCACGCTTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGATGGGATAATAAAGTGAGCTGGATTGGAAAGGAGAGGATTTGATTGGCAGATAGATCAATGACTTGGAGGGAATGTACACGGTAGAGATCATCAATGTAGCCAAGGGGAGCAAGGGACTGGAATTGATTAAAATGTGAATTATTTTCCAACAAAAATCAAGTTTCTAGCTCAATTTTGAAGAGAGTTATTGGTTAAGTTATTCACGGTCGGCTGTAGGACGCGGTCGGCAGCAGGGCGCGCGCGCGCCAACCACCACCTCTTGCCGACTGCGCCCTCGGAACAATTTGATCTATAACTCTCTTCAAAATTGAGCTAGAAACTTTATTTTTGTTGCAAGATAAAGATAATTTTTAGACTTTGTTCTACTGATTTAAACTTTACCTTTTCCGTAGGCGGTCTGCTTATCAATGAGTTCCGCCTCAAATTCAGAATCTGAATCCGCGCTTCATTATTCAGAATCTGTTCTGGTATTAGTGTTAATTGCTCATCACTTGCGTCCACATGATTGCTTTTCTCCACTTGTTGGGCTCTCGAAAACCACGCTTCCAGAATATTCGGTCGTTGAAAAATGATCAAAAAACAGTTATCGTCGTCTTTGAGTCGTAGGGACCGCCCTTTTTTTGACTCATAAATGTCCACCTTCATATTCCGGATTTGAAGAGCTTCGTCTTGATTGTTTTCTGAAAAAAAATCACATTAGAAGCGCATGGGAGTGAGAGACGCAAAGAAGTGAGCGCGCCTGTTTGCCTCCCTCGTTTATCTTCAAAGCTCCATATCTCGATCGCTATGAGAGCTATCGAAAAGATGTCAACTAAAGAAATGTGTAAAATTTTACAAGCTACATTTTAACAGTTAACAAAATGTTTTTAACTTTAAACTGGAAAAGATACAAGCGTTTGAATTTGAGAGGGCAGGGAAGAGAGAGCTTGTCGAGAGCTTTTGTTCAAGACTCTATATCTCGGTTGCTATAAGAGCTATTAAAAAGTTATCAACTAA</canonical>
            <polymorphic>GAGATGGGATAATAAAGTGAGCTGGATTGGAAAGGAGAGGATTTGATTGGCAGATAGATCAATGACTTGGAGGGAATGTACACGGTAGAGATCATCAATGTAGCCAAGGGGAGCAAGGGACTGGAATTGATTAAAATGTGAATTATTTTCCAACAAAAATCAAGTTTCTAGCTCAATTTTGAAGAGAGTTATTGGTTAAGTTATTCACGGTCGGCTGTAGGACGCGGTCGGCAGCAGGGCGCGCGCGCGCCAACCACCACCTCTTGCCGACTGCGCCCTCGGAACAATTTGATCTATAACTCTCTTCAAAATTGAGCTAGAAACTTTATTTTTGTTGCAAGATAAAGATAATTTTTAGACTTTGTTCTACTGATTTAAACTTTACCTTTTCCGTAGGCGGTCTGCTTATCAATGAGTTCCGCCTCAAATTCAGAATCTGAATCCGCGCTTCATTATTCAGAATCTGTTCTGGTATTAGTGTTAATTGCTCATCACTTGCRTCCACATGATTGCTTTTCTCCACTTGTTGGGCTCTCGAAAACCACGCTTCCAGAATATTCGGTCGTTGAAAAATGATCAAAAAACAGTTATCGTCGTCTTTGAGTCGTAGGGACCGCCCTTTTTTTGACTCATAAATGTCCACCTTCATATTCCGGATTTGAAGAGCTTCGTCTTGATTGTTTTCTGAAAAAAAATCACATTAGAAGCGCATGGGAGTGAGAGACGCAAAGAAGTGAGCGCGCCTGTTTGCCTCCCTCGTTTATCTTCAAAGCTCCATATCTCGATCGCTATGAGAGCTATCGAAAAGATGTCAACTAAAGAAATGTGTAAAATTTTACAAGCTACATTTTAACAGTTAACAAAATGTTTTTAACTTTAAACTGGAAAAGATACAAGCGTTTGAATTTGAGAGGGCAGGGAAGAGAGAGCTTGTCGAGAGCTTTTGTTCAAGACTCTATATCTCGGTTGCTATAAGAGCTATTAAAAAGTTATCAACTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>422 173 142 138 80 45</canonical_bands>
                <polymorphic_bands>560 173 142 80 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGTCTGCTTATCAATGAGT</pcr_primer_p1>
		<pcr_primer_p2>TATGAAGGTGGACATTTATGAGT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CGGTCTGCTTATCAATGAGTTCCGCCTCAAATTCAGAATCTGAATCCGCGCTTCATTATTCAGAATCTGTTCTGGTATTAGTGTTAATTGCTCATCACTTGCGTCCACATGATTGCTTTTCTCCACTTGTTGGGCTCTCGAAAACCACGCTTCCAGAATATTCGGTCGTTGAAAAATGATCAAAAAACAGTTATCGTCGTCTTTGAGTCGTAGGGACCGCCCTTTTTTTGACTCATAAATGTCCACCTTCATA</canonical_amplicon>
		<polymorphic_amplicon>CGGTCTGCTTATCAATGAGTTCCGCCTCAAATTCAGAATCTGAATCCGCGCTTCATTATTCAGAATCTGTTCTGGTATTAGTGTTAATTGCTCATCACTTGCRTCCACATGATTGCTTTTCTCCACTTGTTGGGCTCTCGAAAACCACGCTTCCAGAATATTCGGTCGTTGAAAAATGATCAAAAAACAGTTATCGTCGTCTTTGAGTCGTAGGGACCGCCCTTTTTTTGACTCATAAATGTCCACCTTCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35760</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>21328</contig_pos>
        <strand>+</strand>
        <context>AAATGATCAA[A/T]AAACAGTTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTCTCGAAAACCACGCTTCCAGAATATTCGGTCGTTGAAAAATGATCAA</left_flank>
        <right_flank>AAACAGTTATCGTCGTCTTTGAGTCGTAGGGACCGCCCTTTTTTTGACTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGGTAGAGATCATCAATGTAGCCAAGGGGAGCAAGGGACTGGAATTGATTAAAATGTGAATTATTTTCCAACAAAAATCAAGTTTCTAGCTCAATTTTGAAGAGAGTTATTGGTTAAGTTATTCACGGTCGGCTGTAGGACGCGGTCGGCAGCAGGGCGCGCGCGCGCCAACCACCACCTCTTGCCGACTGCGCCCTCGGAACAATTTGATCTATAACTCTCTTCAAAATTGAGCTAGAAACTTTATTTTTGTTGCAAGATAAAGATAATTTTTAGACTTTGTTCTACTGATTTAAACTTTACCTTTTCCGTAGGCGGTCTGCTTATCAATGAGTTCCGCCTCAAATTCAGAATCTGAATCCGCGCTTCATTATTCAGAATCTGTTCTGGTATTAGTGTTAATTGCTCATCACTTGCGTCCACATGATTGCTTTTCTCCACTTGTTGGGCTCTCGAAAACCACGCTTCCAGAATATTCGGTCGTTGAAAAATGATCAAAAAACAGTTATCGTCGTCTTTGAGTCGTAGGGACCGCCCTTTTTTTGACTCATAAATGTCCACCTTCATATTCCGGATTTGAAGAGCTTCGTCTTGATTGTTTTCTGAAAAAAAATCACATTAGAAGCGCATGGGAGTGAGAGACGCAAAGAAGTGAGCGCGCCTGTTTGCCTCCCTCGTTTATCTTCAAAGCTCCATATCTCGATCGCTATGAGAGCTATCGAAAAGATGTCAACTAAAGAAATGTGTAAAATTTTACAAGCTACATTTTAACAGTTAACAAAATGTTTTTAACTTTAAACTGGAAAAGATACAAGCGTTTGAATTTGAGAGGGCAGGGAAGAGAGAGCTTGTCGAGAGCTTTTGTTCAAGACTCTATATCTCGGTTGCTATAAGAGCTATTAAAAAGTTATCAACTAAAGAAACGTGTACAATGTTGAGCTAATTAATTCTGTAGTAGACTATTCTCCAGTAGCGATTTTAGTTTTTGAGATACAGTAC</canonical>
            <polymorphic>ACGGTAGAGATCATCAATGTAGCCAAGGGGAGCAAGGGACTGGAATTGATTAAAATGTGAATTATTTTCCAACAAAAATCAAGTTTCTAGCTCAATTTTGAAGAGAGTTATTGGTTAAGTTATTCACGGTCGGCTGTAGGACGCGGTCGGCAGCAGGGCGCGCGCGCGCCAACCACCACCTCTTGCCGACTGCGCCCTCGGAACAATTTGATCTATAACTCTCTTCAAAATTGAGCTAGAAACTTTATTTTTGTTGCAAGATAAAGATAATTTTTAGACTTTGTTCTACTGATTTAAACTTTACCTTTTCCGTAGGCGGTCTGCTTATCAATGAGTTCCGCCTCAAATTCAGAATCTGAATCCGCGCTTCATTATTCAGAATCTGTTCTGGTATTAGTGTTAATTGCTCATCACTTGCGTCCACATGATTGCTTTTCTCCACTTGTTGGGCTCTCGAAAACCACGCTTCCAGAATATTCGGTCGTTGAAAAATGATCAAWAAACAGTTATCGTCGTCTTTGAGTCGTAGGGACCGCCCTTTTTTTGACTCATAAATGTCCACCTTCATATTCCGGATTTGAAGAGCTTCGTCTTGATTGTTTTCTGAAAAAAAATCACATTAGAAGCGCATGGGAGTGAGAGACGCAAAGAAGTGAGCGCGCCTGTTTGCCTCCCTCGTTTATCTTCAAAGCTCCATATCTCGATCGCTATGAGAGCTATCGAAAAGATGTCAACTAAAGAAATGTGTAAAATTTTACAAGCTACATTTTAACAGTTAACAAAATGTTTTTAACTTTAAACTGGAAAAGATACAAGCGTTTGAATTTGAGAGGGCAGGGAAGAGAGAGCTTGTCGAGAGCTTTTGTTCAAGACTCTATATCTCGGTTGCTATAAGAGCTATTAAAAAGTTATCAACTAAAGAAACGTGTACAATGTTGAGCTAATTAATTCTGTAGTAGACTATTCTCCAGTAGCGATTTTAGTTTTTGAGATACAGTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTCTGCTTATCAATGAGT</pcr_primer_p1>
		<pcr_primer_p2>TATGAAGGTGGACATTTATGAGT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CGGTCTGCTTATCAATGAGTTCCGCCTCAAATTCAGAATCTGAATCCGCGCTTCATTATTCAGAATCTGTTCTGGTATTAGTGTTAATTGCTCATCACTTGCGTCCACATGATTGCTTTTCTCCACTTGTTGGGCTCTCGAAAACCACGCTTCCAGAATATTCGGTCGTTGAAAAATGATCAAAAAACAGTTATCGTCGTCTTTGAGTCGTAGGGACCGCCCTTTTTTTGACTCATAAATGTCCACCTTCATA</canonical_amplicon>
		<polymorphic_amplicon>CGGTCTGCTTATCAATGAGTTCCGCCTCAAATTCAGAATCTGAATCCGCGCTTCATTATTCAGAATCTGTTCTGGTATTAGTGTTAATTGCTCATCACTTGCGTCCACATGATTGCTTTTCTCCACTTGTTGGGCTCTCGAAAACCACGCTTCCAGAATATTCGGTCGTTGAAAAATGATCAAWAAACAGTTATCGTCGTCTTTGAGTCGTAGGGACCGCCCTTTTTTTGACTCATAAATGTCCACCTTCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35761</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>21373</contig_pos>
        <strand>+</strand>
        <context>GCCCTTTTTT[C/T]GACTCATAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCAAAAAACAGTTATCGTCGTCTTTGAGTCGTAGGGACCGCCCTTTTTT</left_flank>
        <right_flank>GACTCATAAATGTCCACCTTCATATTCCGGATTTGAAGAGCTTCGTCTTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGATTAAAATGTGAATTATTTTCCAACAAAAATCAAGTTTCTAGCTCAATTTTGAAGAGAGTTATTGGTTAAGTTATTCACGGTCGGCTGTAGGACGCGGTCGGCAGCAGGGCGCGCGCGCGCCAACCACCACCTCTTGCCGACTGCGCCCTCGGAACAATTTGATCTATAACTCTCTTCAAAATTGAGCTAGAAACTTTATTTTTGTTGCAAGATAAAGATAATTTTTAGACTTTGTTCTACTGATTTAAACTTTACCTTTTCCGTAGGCGGTCTGCTTATCAATGAGTTCCGCCTCAAATTCAGAATCTGAATCCGCGCTTCATTATTCAGAATCTGTTCTGGTATTAGTGTTAATTGCTCATCACTTGCGTCCACATGATTGCTTTTCTCCACTTGTTGGGCTCTCGAAAACCACGCTTCCAGAATATTCGGTCGTTGAAAAATGATCAAAAAACAGTTATCGTCGTCTTTGAGTCGTAGGGACCGCCCTTTTTTTGACTCATAAATGTCCACCTTCATATTCCGGATTTGAAGAGCTTCGTCTTGATTGTTTTCTGAAAAAAAATCACATTAGAAGCGCATGGGAGTGAGAGACGCAAAGAAGTGAGCGCGCCTGTTTGCCTCCCTCGTTTATCTTCAAAGCTCCATATCTCGATCGCTATGAGAGCTATCGAAAAGATGTCAACTAAAGAAATGTGTAAAATTTTACAAGCTACATTTTAACAGTTAACAAAATGTTTTTAACTTTAAACTGGAAAAGATACAAGCGTTTGAATTTGAGAGGGCAGGGAAGAGAGAGCTTGTCGAGAGCTTTTGTTCAAGACTCTATATCTCGGTTGCTATAAGAGCTATTAAAAAGTTATCAACTAAAGAAACGTGTACAATGTTGAGCTAATTAATTCTGTAGTAGACTATTCTCCAGTAGCGATTTTAGTTTTTGAGATACAGTACTGGCCAAAAAGGTATTCGCAAACGGTTTTTTGAGAGTAACTTTGC</canonical>
            <polymorphic>TTGATTAAAATGTGAATTATTTTCCAACAAAAATCAAGTTTCTAGCTCAATTTTGAAGAGAGTTATTGGTTAAGTTATTCACGGTCGGCTGTAGGACGCGGTCGGCAGCAGGGCGCGCGCGCGCCAACCACCACCTCTTGCCGACTGCGCCCTCGGAACAATTTGATCTATAACTCTCTTCAAAATTGAGCTAGAAACTTTATTTTTGTTGCAAGATAAAGATAATTTTTAGACTTTGTTCTACTGATTTAAACTTTACCTTTTCCGTAGGCGGTCTGCTTATCAATGAGTTCCGCCTCAAATTCAGAATCTGAATCCGCGCTTCATTATTCAGAATCTGTTCTGGTATTAGTGTTAATTGCTCATCACTTGCGTCCACATGATTGCTTTTCTCCACTTGTTGGGCTCTCGAAAACCACGCTTCCAGAATATTCGGTCGTTGAAAAATGATCAAAAAACAGTTATCGTCGTCTTTGAGTCGTAGGGACCGCCCTTTTTTYGACTCATAAATGTCCACCTTCATATTCCGGATTTGAAGAGCTTCGTCTTGATTGTTTTCTGAAAAAAAATCACATTAGAAGCGCATGGGAGTGAGAGACGCAAAGAAGTGAGCGCGCCTGTTTGCCTCCCTCGTTTATCTTCAAAGCTCCATATCTCGATCGCTATGAGAGCTATCGAAAAGATGTCAACTAAAGAAATGTGTAAAATTTTACAAGCTACATTTTAACAGTTAACAAAATGTTTTTAACTTTAAACTGGAAAAGATACAAGCGTTTGAATTTGAGAGGGCAGGGAAGAGAGAGCTTGTCGAGAGCTTTTGTTCAAGACTCTATATCTCGGTTGCTATAAGAGCTATTAAAAAGTTATCAACTAAAGAAACGTGTACAATGTTGAGCTAATTAATTCTGTAGTAGACTATTCTCCAGTAGCGATTTTAGTTTTTGAGATACAGTACTGGCCAAAAAGGTATTCGCAAACGGTTTTTTGAGAGTAACTTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTCATTATTCAGAATCTGTTC</pcr_primer_p1>
		<pcr_primer_p2>AAACAATCAAGACGAAGCTCT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>GCTTCATTATTCAGAATCTGTTCTGGTATTAGTGTTAATTGCTCATCACTTGCGTCCACATGATTGCTTTTCTCCACTTGTTGGGCTCTCGAAAACCACGCTTCCAGAATATTCGGTCGTTGAAAAATGATCAAAAAACAGTTATCGTCGTCTTTGAGTCGTAGGGACCGCCCTTTTTTTGACTCATAAATGTCCACCTTCATATTCCGGATTTGAAGAGCTTCGTCTTGATTGTTT</canonical_amplicon>
		<polymorphic_amplicon>GCTTCATTATTCAGAATCTGTTCTGGTATTAGTGTTAATTGCTCATCACTTGCGTCCACATGATTGCTTTTCTCCACTTGTTGGGCTCTCGAAAACCACGCTTCCAGAATATTCGGTCGTTGAAAAATGATCAAAAAACAGTTATCGTCGTCTTTGAGTCGTAGGGACCGCCCTTTTTTYGACTCATAAATGTCCACCTTCATATTCCGGATTTGAAGAGCTTCGTCTTGATTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35764</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>68102</contig_pos>
        <strand>+</strand>
        <context>CGATCATCTG[C/T]AAAAGCTCGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGATCAATATGCTGGAGGACTTTAGAAAGAATGGAGTGGCGATCATCTG</left_flank>
        <right_flank>AAAAGCTCGTCGTCCAAATTCAAGCTAGTGCTTTTCGATAAGGAAGGAGG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCCGAAATCAAGTCGGCCTACCGAAAATTAGCCCTTAAATACCATCCGGATCGTAATCCAAACGATGTACACGCTCAAGAGCAGTTCAAAAAGGTCTCTATTGCCTATTCGGTGCTCTCGGACCCCAATAAGCGAAGACAGTACGATGTGAGTGGTCCGTCAGAGAATCAGCTGGATTTTGAGGGTTTTGATGTGTCGGAAATGGGTGGAGTTGGTGAGTAAAGTCTTCTTTGTGTTGTTTGAATCAAAACTTTGAATTTTTTAGGCCGCGTTTTCGGAGCCCTCTTCAGCAAACTCGGAGTCCCAATTCCCACTCAAATCGTCCCCAAAGTCCTCGCTCAAGCTCGCCAAATCTGTCTGGGGCAGGAAAGTGACATCCACGCAAGGCCGCTGGCCCCAGGAGACACTGTTACAGCTTCTGTGAGCAAGCAACATGCGCATTTCTATGAGATCAATATGCTGGAGGACTTTAGAAAGAATGGAGTGGCGATCATCTGCAAAAGCTCGTCGTCCAAATTCAAGCTAGTGCTTTTCGATAAGGAAGGAGGTGTGCGGATGATTCAGGAGTCCGGGAAACGTGGAAAAGCTGGAACCCAAGCGGATATGTTCTTTGTGCCTTACAACGTCGCGAATATTCAAGAATTCAACCCGATGAAGTATCATTTGGAAGACAAGGATACGCCGATAGCTTTCCACTATTTGGATTCGTTTGAAATGCAAACGGCGACACTTTTGGAGACCCGAAAACACTATATTGCTGTATATGGTGACAATTGGATAAGCGATGTGAAGTACTCTATAACCTTCTTACCGGTGGCGGCAGCTGCTAACGAGCAGCTTGTGGAGATTCAGGACACCGAAAAGGCGATATCCGTGATAAAAAAGGAAATGCTAGACTTCCAGAGAGAATTCACAGAAGCTAAGCGCAAATACGATGAGGCGGTTGCTAAGCTCAAAGTGCAGGACGACGTTATCCTGAAGGCCTTGTCGACCCGTGA</canonical>
            <polymorphic>AAGCCGAAATCAAGTCGGCCTACCGAAAATTAGCCCTTAAATACCATCCGGATCGTAATCCAAACGATGTACACGCTCAAGAGCAGTTCAAAAAGGTCTCTATTGCCTATTCGGTGCTCTCGGACCCCAATAAGCGAAGACAGTACGATGTGAGTGGTCCGTCAGAGAATCAGCTGGATTTTGAGGGTTTTGATGTGTCGGAAATGGGTGGAGTTGGTGAGTAAAGTCTTCTTTGTGTTGTTTGAATCAAAACTTTGAATTTTTTAGGCCGCGTTTTCGGAGCCCTCTTCAGCAAACTCGGAGTCCCAATTCCCACTCAAATCGTCCCCAAAGTCCTCGCTCAAGCTCGCCAAATCTGTCTGGGGCAGGAAAGTGACATCCACGCAAGGCCGCTGGCCCCAGGAGACACTGTTACAGCTTCTGTGAGCAAGCAACATGCGCATTTCTATGAGATCAATATGCTGGAGGACTTTAGAAAGAATGGAGTGGCGATCATCTGYAAAAGCTCGTCGTCCAAATTCAAGCTAGTGCTTTTCGATAAGGAAGGAGGTGTGCGGATGATTCAGGAGTCCGGGAAACGTGGAAAAGCTGGAACCCAAGCGGATATGTTCTTTGTGCCTTACAACGTCGCGAATATTCAAGAATTCAACCCGATGAAGTATCATTTGGAAGACAAGGATACGCCGATAGCTTTCCACTATTTGGATTCGTTTGAAATGCAAACGGCGACACTTTTGGAGACCCGAAAACACTATATTGCTGTATATGGTGACAATTGGATAAGCGATGTGAAGTACTCTATAACCTTCTTACCGGTGGCGGCAGCTGCTAACGAGCAGCTTGTGGAGATTCAGGACACCGAAAAGGCGATATCCGTGATAAAAAAGGAAATGCTAGACTTCCAGAGAGAATTCACAGAAGCTAAGCGCAAATACGATGAGGCGGTTGCTAAGCTCAAAGTGCAGGACGACGTTATCCTGAAGGCCTTGTCGACCCGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>499 243 220 38</canonical_bands>
                <polymorphic_bands>719 243 38</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGATCAATATGCTGGAGGAC</pcr_primer_p1>
		<pcr_primer_p2>TATCCTTGTCTTCCAAATGATAC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>GAGATCAATATGCTGGAGGACTTTAGAAAGAATGGAGTGGCGATCATCTGCAAAAGCTCGTCGTCCAAATTCAAGCTAGTGCTTTTCGATAAGGAAGGAGGTGTGCGGATGATTCAGGAGTCCGGGAAACGTGGAAAAGCTGGAACCCAAGCGGATATGTTCTTTGTGCCTTACAACGTCGCGAATATTCAAGAATTCAACCCGATGAAGTATCATTTGGAAGACAAGGATA</canonical_amplicon>
		<polymorphic_amplicon>GAGATCAATATGCTGGAGGACTTTAGAAAGAATGGAGTGGCGATCATCTGYAAAAGCTCGTCGTCCAAATTCAAGCTAGTGCTTTTCGATAAGGAAGGAGGTGTGCGGATGATTCAGGAGTCCGGGAAACGTGGAAAAGCTGGAACCCAAGCGGATATGTTCTTTGTGCCTTACAACGTCGCGAATATTCAAGAATTCAACCCGATGAAGTATCATTTGGAAGACAAGGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35765</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>102748</contig_pos>
        <strand></strand>
        <context>GAAATTTTTT[T/C]GATTTCCAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTCAAAAACGGACCACGGCTTCTTAAAGTCTCCGAAAATTGAAATTTTTT</left_flank>
        <right_flank>GATTTCCAGATTAGTGAAAACCTTTTTTGAAGATTCTGGATTTCTGGAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATCGCTAATCGAATCAAGCTTTTTTTAGTTATTTGATGGTGAATAGTTCTAATATTTCGTTTTAAATCCAAATATGAAAATTTTAGAAAAATTGCAATCGCGCTCCACCGAACTTTGATCTCTTTTCCTCATAGTCAATTAGTATCCTAGTGATTCATTCATTCAGAAAAAAAAATGGAAATGAGCAATCCAATTTTCCTTTATGTCGTCTTATTCTTTTTCGACAGACAGAGTGAATAAGGCTAATGGGAATCATAAACGACCGTAATAAACCATCAAATAAAGAGGACCACATTTCGGAGGTCGACAAAAAATGGCATGGCTTTTTAGTCATTTTTTCTTGGCTCTCGACATTTTTATGTATAATTGTACTGTTTTTCGAGAAAATTCTAACTTTTGAGATTCTGACTTCGGCTCAGAAGCGGCTCAAAAACGGACCGGCAATCTCAAAAACGGACCACGGCTTCTTAAAGTCTCCGAAAATTGAAATTTTTTTGATTTCCAGATTAGTGAAAACCTTTTTTGAAGATTCTGGATTTCTGGAATCCCGAATATCAGGTTTCATGAATTCTGAGAGATTGAAATTCTGAAATTTTGAAATTCTGAGATTCCGAGATTCTAAAAGATTGAAAACTCTGTAAATCCGGAATGATGAAATTTCGAAGTTCTGAAATTCTGAGATTTTCTTAGATTTTTTTCAATTGCTTTCTTACGTAATCCATCGAGCTCCGCACATAAAATCATATTGAGAATTGGCTCCGAGAGCCAATTTTCAATATCCCATAAACTATAAAAATCGGCGAAATGGGATTCGTGGTTATGAGGTTTTTGAAGGCGGGGAAGGAAGAAAAGGTTGTTATTATAATTGTGCAATTTTTGCTTTCGCCAGATTTTTTTATTTTATAGTTTCCCATGCTTTTCAGATGATGATCCCCCTTGAATTTTCTAGTTAATAGTGTCAAAAATCTTGAATTTTTTGAATTTTCCGTTTAAATT</canonical>
            <polymorphic>AAAAATCGCTAATCGAATCAAGCTTTTTTTAGTTATTTGATGGTGAATAGTTCTAATATTTCGTTTTAAATCCAAATATGAAAATTTTAGAAAAATTGCAATCGCGCTCCACCGAACTTTGATCTCTTTTCCTCATAGTCAATTAGTATCCTAGTGATTCATTCATTCAGAAAAAAAAATGGAAATGAGCAATCCAATTTTCCTTTATGTCGTCTTATTCTTTTTCGACAGACAGAGTGAATAAGGCTAATGGGAATCATAAACGACCGTAATAAACCATCAAATAAAGAGGACCACATTTCGGAGGTCGACAAAAAATGGCATGGCTTTTTAGTCATTTTTTCTTGGCTCTCGACATTTTTATGTATAATTGTACTGTTTTTCGAGAAAATTCTAACTTTTGAGATTCTGACTTCGGCTCAGAAGCGGCTCAAAAACGGACCGGCAATCTCAAAAACGGACCACGGCTTCTTAAAGTCTCCGAAAATTGAAATTTTTTYGATTTCCAGATTAGTGAAAACCTTTTTTGAAGATTCTGGATTTCTGGAATCCCGAATATCAGGTTTCATGAATTCTGAGAGATTGAAATTCTGAAATTTTGAAATTCTGAGATTCCGAGATTCTAAAAGATTGAAAACTCTGTAAATCCGGAATGATGAAATTTCGAAGTTCTGAAATTCTGAGATTTTCTTAGATTTTTTTCAATTGCTTTCTTACGTAATCCATCGAGCTCCGCACATAAAATCATATTGAGAATTGGCTCCGAGAGCCAATTTTCAATATCCCATAAACTATAAAAATCGGCGAAATGGGATTCGTGGTTATGAGGTTTTTGAAGGCGGGGAAGGAAGAAAAGGTTGTTATTATAATTGTGCAATTTTTGCTTTCGCCAGATTTTTTTATTTTATAGTTTCCCATGCTTTTCAGATGATGATCCCCCTTGAATTTTCTAGTTAATAGTGTCAAAAATCTTGAATTTTTTGAATTTTCCGTTTAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTAACTTTTGAGATTCTGACTTC</pcr_primer_p1>
		<pcr_primer_p2>GATTACGTAAGAAAGCAATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>332</pcr_amplicon_size>
		<canonical_amplicon>TTCTAACTTTTGAGATTCTGACTTCGGCTCAGAAGCGGCTCAAAAACGGACCGGCAATCTCAAAAACGGACCACGGCTTCTTAAAGTCTCCGAAAATTGAAATTTTTTTGATTTCCAGATTAGTGAAAACCTTTTTTGAAGATTCTGGATTTCTGGAATCCCGAATATCAGGTTTCATGAATTCTGAGAGATTGAAATTCTGAAATTTTGAAATTCTGAGATTCCGAGATTCTAAAAGATTGAAAACTCTGTAAATCCGGAATGATGAAATTTCGAAGTTCTGAAATTCTGAGATTTTCTTAGATTTTTTTCAATTGCTTTCTTACGTAATC</canonical_amplicon>
		<polymorphic_amplicon>TTCTAACTTTTGAGATTCTGACTTCGGCTCAGAAGCGGCTCAAAAACGGACCGGCAATCTCAAAAACGGACCACGGCTTCTTAAAGTCTCCGAAAATTGAAATTTTTTYGATTTCCAGATTAGTGAAAACCTTTTTTGAAGATTCTGGATTTCTGGAATCCCGAATATCAGGTTTCATGAATTCTGAGAGATTGAAATTCTGAAATTTTGAAATTCTGAGATTCCGAGATTCTAAAAGATTGAAAACTCTGTAAATCCGGAATGATGAAATTTCGAAGTTCTGAAATTCTGAGATTTTCTTAGATTTTTTTCAATTGCTTTCTTACGTAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35766</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>102867</contig_pos>
        <strand></strand>
        <context>gagattccga[G/A]attctaaaag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGAATTCTGAGAGATTGAAATTCTGAAATTTTGAAATTCTGAGATTCCGA</left_flank>
        <right_flank>ATTCTAAAAGATTGAAAACTCTGTAAATCCGGAATGATGAAATTTCGAAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATCTCTTTTCCTCATAGTCAATTAGTATCCTAGTGATTCATTCATTCAGAAAAAAAAATGGAAATGAGCAATCCAATTTTCCTTTATGTCGTCTTATTCTTTTTCGACAGACAGAGTGAATAAGGCTAATGGGAATCATAAACGACCGTAATAAACCATCAAATAAAGAGGACCACATTTCGGAGGTCGACAAAAAATGGCATGGCTTTTTAGTCATTTTTTCTTGGCTCTCGACATTTTTATGTATAATTGTACTGTTTTTCGAGAAAATTCTAACTTTTGAGATTCTGACTTCGGCTCAGAAGCGGCTCAAAAACGGACCGGCAATCTCAAAAACGGACCACGGCTTCTTAAAGTCTCCGAAAATTGAAATTTTTTTGATTTCCAGATTAGTGAAAACCTTTTTTGAAGATTCTGGATTTCTGGAATCCCGAATATCAGGTTTCATGAATTCTGAGAGATTGAAATTCTGAAATTTTGAAATTCTGAGATTCCGAGATTCTAAAAGATTGAAAACTCTGTAAATCCGGAATGATGAAATTTCGAAGTTCTGAAATTCTGAGATTTTCTTAGATTTTTTTCAATTGCTTTCTTACGTAATCCATCGAGCTCCGCACATAAAATCATATTGAGAATTGGCTCCGAGAGCCAATTTTCAATATCCCATAAACTATAAAAATCGGCGAAATGGGATTCGTGGTTATGAGGTTTTTGAAGGCGGGGAAGGAAGAAAAGGTTGTTATTATAATTGTGCAATTTTTGCTTTCGCCAGATTTTTTTATTTTATAGTTTCCCATGCTTTTCAGATGATGATCCCCCTTGAATTTTCTAGTTAATAGTGTCAAAAATCTTGAATTTTTTGAATTTTCCGTTTAAATTTTCATATGACCTTGTTCTGGATTTTAGGCCATACATCGGTAAATTTTTGTATAAATTCAATTTCTATACATTTGTCGAGTTTACCTCATCCTGACAAGGGAAGGTTTTTTAGACAACGG</canonical>
            <polymorphic>TGATCTCTTTTCCTCATAGTCAATTAGTATCCTAGTGATTCATTCATTCAGAAAAAAAAATGGAAATGAGCAATCCAATTTTCCTTTATGTCGTCTTATTCTTTTTCGACAGACAGAGTGAATAAGGCTAATGGGAATCATAAACGACCGTAATAAACCATCAAATAAAGAGGACCACATTTCGGAGGTCGACAAAAAATGGCATGGCTTTTTAGTCATTTTTTCTTGGCTCTCGACATTTTTATGTATAATTGTACTGTTTTTCGAGAAAATTCTAACTTTTGAGATTCTGACTTCGGCTCAGAAGCGGCTCAAAAACGGACCGGCAATCTCAAAAACGGACCACGGCTTCTTAAAGTCTCCGAAAATTGAAATTTTTTTGATTTCCAGATTAGTGAAAACCTTTTTTGAAGATTCTGGATTTCTGGAATCCCGAATATCAGGTTTCATGAATTCTGAGAGATTGAAATTCTGAAATTTTGAAATTCTGAGATTCCGARATTCTAAAAGATTGAAAACTCTGTAAATCCGGAATGATGAAATTTCGAAGTTCTGAAATTCTGAGATTTTCTTAGATTTTTTTCAATTGCTTTCTTACGTAATCCATCGAGCTCCGCACATAAAATCATATTGAGAATTGGCTCCGAGAGCCAATTTTCAATATCCCATAAACTATAAAAATCGGCGAAATGGGATTCGTGGTTATGAGGTTTTTGAAGGCGGGGAAGGAAGAAAAGGTTGTTATTATAATTGTGCAATTTTTGCTTTCGCCAGATTTTTTTATTTTATAGTTTCCCATGCTTTTCAGATGATGATCCCCCTTGAATTTTCTAGTTAATAGTGTCAAAAATCTTGAATTTTTTGAATTTTCCGTTTAAATTTTCATATGACCTTGTTCTGGATTTTAGGCCATACATCGGTAAATTTTTGTATAAATTCAATTTCTATACATTTGTCGAGTTTACCTCATCCTGACAAGGGAAGGTTTTTTAGACAACGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>306 194 151 127 98 64 37 15 8</canonical_bands>
                <polymorphic_bands>306 202 151 127 98 64 37 15</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>306 194 151 127 98 64 37 15 8</canonical_bands>
                <polymorphic_bands>306 202 151 127 98 64 37 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAGTCTCCGAAAATTGAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTACGTAAGAAAGCAATTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAAGTCTCCGAAAATTGAAATTTTTTTGATTTCCAGATTAGTGAAAACCTTTTTTGAAGATTCTGGATTTCTGGAATCCCGAATATCAGGTTTCATGAATTCTGAGAGATTGAAATTCTGAAATTTTGAAATTCTGAGATTCCGAGATTCTAAAAGATTGAAAACTCTGTAAATCCGGAATGATGAAATTTCGAAGTTCTGAAATTCTGAGATTTTCTTAGATTTTTTTCAATTGCTTTCTTACGTAAT</canonical_amplicon>
		<polymorphic_amplicon>TAAAGTCTCCGAAAATTGAAATTTTTTTGATTTCCAGATTAGTGAAAACCTTTTTTGAAGATTCTGGATTTCTGGAATCCCGAATATCAGGTTTCATGAATTCTGAGAGATTGAAATTCTGAAATTTTGAAATTCTGAGATTCCGARATTCTAAAAGATTGAAAACTCTGTAAATCCGGAATGATGAAATTTCGAAGTTCTGAAATTCTGAGATTTTCTTAGATTTTTTTCAATTGCTTTCTTACGTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35767</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>103182</contig_pos>
        <strand></strand>
        <context>TCAGATGATG[A/G]TCCCCCTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTCGCCAGATTTTTTTATTTTATAGTTTCCCATGCTTTTCAGATGATG</left_flank>
        <right_flank>TCCCCCTTGAATTTTCTAGTTAATAGTGTCAAAAATCTTGAATTTTTTGA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACGGACCGGCAATCTCAAAAACGGACCACGGCTTCTTAAAGTCTCCGAAAATTGAAATTTTTTTGATTTCCAGATTAGTGAAAACCTTTTTTGAAGATTCTGGATTTCTGGAATCCCGAATATCAGGTTTCATGAATTCTGAGAGATTGAAATTCTGAAATTTTGAAATTCTGAGATTCCGAGATTCTAAAAGATTGAAAACTCTGTAAATCCGGAATGATGAAATTTCGAAGTTCTGAAATTCTGAGATTTTCTTAGATTTTTTTCAATTGCTTTCTTACGTAATCCATCGAGCTCCGCACATAAAATCATATTGAGAATTGGCTCCGAGAGCCAATTTTCAATATCCCATAAACTATAAAAATCGGCGAAATGGGATTCGTGGTTATGAGGTTTTTGAAGGCGGGGAAGGAAGAAAAGGTTGTTATTATAATTGTGCAATTTTTGCTTTCGCCAGATTTTTTTATTTTATAGTTTCCCATGCTTTTCAGATGATGATCCCCCTTGAATTTTCTAGTTAATAGTGTCAAAAATCTTGAATTTTTTGAATTTTCCGTTTAAATTTTCATATGACCTTGTTCTGGATTTTAGGCCATACATCGGTAAATTTTTGTATAAATTCAATTTCTATACATTTGTCGAGTTTACCTCATCCTGACAAGGGAAGGTTTTTTAGACAACGGTTGAGAATTTGCTCAAAATTTGCATACTTTCATTTTAAGACATGCTCTATACGATGATTTTTAGCCCGTTCTCACTGGCTCATTAGTATTGACTATGCTGGTTCGACCCCCACTGTGGTAAAACTTTTTTTGCATTTTTTGAAACTAATTTTTGATTCAAAGTTTGCCCCCCCCCCCCCCCNNNNNNNNNNCCCCCCCCCCCCCTAGGCACTATATAACACTTTTTGATTAATTTAAAAAGGTTTCAAAGAAAAAAAGATTTTATGAGAGTTTGAGGAAAAAATAGATAATGGTCTTTTCGACCGGTTCTCAATG</canonical>
            <polymorphic>AAACGGACCGGCAATCTCAAAAACGGACCACGGCTTCTTAAAGTCTCCGAAAATTGAAATTTTTTTGATTTCCAGATTAGTGAAAACCTTTTTTGAAGATTCTGGATTTCTGGAATCCCGAATATCAGGTTTCATGAATTCTGAGAGATTGAAATTCTGAAATTTTGAAATTCTGAGATTCCGAGATTCTAAAAGATTGAAAACTCTGTAAATCCGGAATGATGAAATTTCGAAGTTCTGAAATTCTGAGATTTTCTTAGATTTTTTTCAATTGCTTTCTTACGTAATCCATCGAGCTCCGCACATAAAATCATATTGAGAATTGGCTCCGAGAGCCAATTTTCAATATCCCATAAACTATAAAAATCGGCGAAATGGGATTCGTGGTTATGAGGTTTTTGAAGGCGGGGAAGGAAGAAAAGGTTGTTATTATAATTGTGCAATTTTTGCTTTCGCCAGATTTTTTTATTTTATAGTTTCCCATGCTTTTCAGATGATGRTCCCCCTTGAATTTTCTAGTTAATAGTGTCAAAAATCTTGAATTTTTTGAATTTTCCGTTTAAATTTTCATATGACCTTGTTCTGGATTTTAGGCCATACATCGGTAAATTTTTGTATAAATTCAATTTCTATACATTTGTCGAGTTTACCTCATCCTGACAAGGGAAGGTTTTTTAGACAACGGTTGAGAATTTGCTCAAAATTTGCATACTTTCATTTTAAGACATGCTCTATACGATGATTTTTAGCCCGTTCTCACTGGCTCATTAGTATTGACTATGCTGGTTCGACCCCCACTGTGGTAAAACTTTTTTTGCATTTTTTGAAACTAATTTTTGATTCAAAGTTTGCCCCCCCCCCCCCCCNNNNNNNNNNCCCCCCCCCCCCCTAGGCACTATATAACACTTTTTGATTAATTTAAAAAGGTTTCAAAGAAAAAAAGATTTTATGAGAGTTTGAGGAAAAAATAGATAATGGTCTTTTCGACCGGTTCTCAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATNNNNATC</site>
                <isoschizomers>
                    <enzyme>BsaBI</enzyme>
                    <enzyme>Bse8I</enzyme>
                    <enzyme>BseJI</enzyme>
                    <enzyme>BsiBI</enzyme>
                    <enzyme>BsrBRI</enzyme>
                    <enzyme>MamI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAGGAAGAAAAGGTTGTTAT</pcr_primer_p1>
		<pcr_primer_p2>ATGAGGTAAACTCGACAAATGTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGAAGGAAGAAAAGGTTGTTATTATAATTGTGCAATTTTTGCTTTCGCCAGATTTTTTTATTTTATAGTTTCCCATGCTTTTCAGATGATGATCCCCCTTGAATTTTCTAGTTAATAGTGTCAAAAATCTTGAATTTTTTGAATTTTCCGTTTAAATTTTCATATGACCTTGTTCTGGATTTTAGGCCATACATCGGTAAATTTTTGTATAAATTCAATTTCTATACATTTGTCGAGTTTACCTCAT</canonical_amplicon>
		<polymorphic_amplicon>GGAAGGAAGAAAAGGTTGTTATTATAATTGTGCAATTTTTGCTTTCGCCAGATTTTTTTATTTTATAGTTTCCCATGCTTTTCAGATGATGRTCCCCCTTGAATTTTCTAGTTAATAGTGTCAAAAATCTTGAATTTTTTGAATTTTCCGTTTAAATTTTCATATGACCTTGTTCTGGATTTTAGGCCATACATCGGTAAATTTTTGTATAAATTCAATTTCTATACATTTGTCGAGTTTACCTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35768</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>104681</contig_pos>
        <strand>+</strand>
        <context>TGAATCACGT[A/C]ATTGAATGCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGT</left_flank>
        <right_flank>ATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATTCAGCATGTTCGAAAGTTCCTTTGTACAAATTTTGAGCAAATTCTCAACCGTTGTCTGAAAAACCTTCCCTTGTGAGCTTCGAAATGAGTATAAACATGACTAGGTTTCTTAAATTTTGATTTTTGAGTTTAAAGGCGCATAAGACCCTCGAAAAAACTGATATATGCCAAAATGGGTCGTGTTTATATTCGTTTTGAAGCTCTTTGAAAATCAAAGTCGAAAACCATATTTTTATTATATTTAGACAAAAACTAGCCGAGTTATGGACTAACCAAGCATGGACCATGAAAAATCTGTTTTCAAAATTTAGATTCCAGAAATTGAGATATTTTTTGTAAAAACGCTCTTGCTCGGGTTGCTTTTTCGAAGCCATAACTTTTTGGAAAAATCGAAATTTTTATGTTTTTAATAAAATCTTTTTATTACCCCCTACAAAAATTTTATGAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAAGAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTTTGAACTTGGCCATTCTAGAATGTTCTGTTCGTTTAGGATACTGTAGCTTTAGTCATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTGCAAAAGGATTACTGTAGTTCAGATATGTTTTTAAAG</canonical>
            <polymorphic>GGATTCAGCATGTTCGAAAGTTCCTTTGTACAAATTTTGAGCAAATTCTCAACCGTTGTCTGAAAAACCTTCCCTTGTGAGCTTCGAAATGAGTATAAACATGACTAGGTTTCTTAAATTTTGATTTTTGAGTTTAAAGGCGCATAAGACCCTCGAAAAAACTGATATATGCCAAAATGGGTCGTGTTTATATTCGTTTTGAAGCTCTTTGAAAATCAAAGTCGAAAACCATATTTTTATTATATTTAGACAAAAACTAGCCGAGTTATGGACTAACCAAGCATGGACCATGAAAAATCTGTTTTCAAAATTTAGATTCCAGAAATTGAGATATTTTTTGTAAAAACGCTCTTGCTCGGGTTGCTTTTTCGAAGCCATAACTTTTTGGAAAAATCGAAATTTTTATGTTTTTAATAAAATCTTTTTATTACCCCCTACAAAAATTTTATGAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGTMATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAAGAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTTTGAACTTGGCCATTCTAGAATGTTCTGTTCGTTTAGGATACTGTAGCTTTAGTCATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTGCAAAAGGATTACTGTAGTTCAGATATGTTTTTAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>437 192 74 73 44 38 34 32 30 20 15 11</canonical_bands>
                <polymorphic_bands>437 192 74 73 50 44 38 34 32 15 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCTTTTTATTACCCCCTACA</pcr_primer_p1>
		<pcr_primer_p2>AAAACCTCAAACGTCATTAAATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATCTTTTTATTACCCCCTACAAAAATTTTATGAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAAGAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAATCTTTTTATTACCCCCTACAAAAATTTTATGAAATCGGAAGCATAAAAAAGCCCAAATCAAATTTTCTAATGAATCACGTMATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAAGAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35769</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>105167</contig_pos>
        <strand></strand>
        <context>CTGTAGTTCA[G/A]ATATGTTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTATCCGTAGTTGCTCTTTTTCAAAAGTGCAAAAGGATTACTGTAGTTCA</left_flank>
        <right_flank>ATATGTTTTTAAAGGTTAATGAGTCTCATAACCCATTAATGGGAATTTTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAAGAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTTTGAACTTGGCCATTCTAGAATGTTCTGTTCGTTTAGGATACTGTAGCTTTAGTCATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTGCAAAAGGATTACTGTAGTTCAGATATGTTTTTAAAGGTTAATGAGTCTCATAACCCATTAATGGGAATTTTTATTATTTGTTGACGTTTGAGGTTTTTGAACTTGGCTAGTCTAGAATTTTCCGTTTGTTTTGGGATACTGTAGCTCTCCGGGATACTGTAGTTTCCGTCATTTGCGAGTTTTACGTTCGTTCTGGAATACTGTAGCCAAAGGCTTTTTTATTTCCTCTCTGGGATACTGTAGCCTGCTGTTGTTTATTTCAGGTTTGGAGTACTGTAGCTCAATATTTTTCTGTTTGTTCAGGGATACTGTAGCTCTCTTTCTCCCGCCGCGTCCCTCGCACATCTGTTCCTCCAAATCTATTTTTTGAGCTCATTTCCGTACCTTGTGGACTCATCTCACATTATTATTGTTGTACACATCACTAGACACAATTGTTTTTCCAATTTCCCCCGAACTGGAAACAAATATTGTTTCCACTGAAACGGAAATTAATATGTGTGGGAGGGTGTGTCTTCTGGT</canonical>
            <polymorphic>TAATGAATCACGTAATTGAATGCGAGCTGGGAATAGAAATAGAAATTTCTAGTTGTTCACTTCTAAAAGTGCAAGAGAATTACTGTAGTTCAAATGTGTTTTTTTGAAATGGCAATATAGTTGATGGGTCTCATAACCCATTAATGGGACGTTCTTTATTTAATGACGTTTGAGGTTTTTGAACTTGGCCATTCTAGAATGTTCTGTTCGTTTAGGATACTGTAGCTTTAGTCATTTGAGAGATTTTCGTTTGTTCTGGGGCACTGTAGCCTAACGCTTTATTATTTCCGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTGCAAAAGGATTACTGTAGTTCARATATGTTTTTAAAGGTTAATGAGTCTCATAACCCATTAATGGGAATTTTTATTATTTGTTGACGTTTGAGGTTTTTGAACTTGGCTAGTCTAGAATTTTCCGTTTGTTTTGGGATACTGTAGCTCTCCGGGATACTGTAGTTTCCGTCATTTGCGAGTTTTACGTTCGTTCTGGAATACTGTAGCCAAAGGCTTTTTTATTTCCTCTCTGGGATACTGTAGCCTGCTGTTGTTTATTTCAGGTTTGGAGTACTGTAGCTCAATATTTTTCTGTTTGTTCAGGGATACTGTAGCTCTCTTTCTCCCGCCGCGTCCCTCGCACATCTGTTCCTCCAAATCTATTTTTTGAGCTCATTTCCGTACCTTGTGGACTCATCTCACATTATTATTGTTGTACACATCACTAGACACAATTGTTTTTCCAATTTCCCCCGAACTGGAAACAAATATTGTTTCCACTGAAACGGAAATTAATATGTGTGGGAGGGTGTGTCTTCTGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGTCTAGGGTACTGTAGCTGTT</pcr_primer_p1>
		<pcr_primer_p2>ACCTCAAACGTCAACAAATAATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTGCAAAAGGATTACTGTAGTTCAGATATGTTTTTAAAGGTTAATGAGTCTCATAACCCATTAATGGGAATTTTTATTATTTGTTGACGTTTGAGGT</canonical_amplicon>
		<polymorphic_amplicon>AGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTGCAAAAGGATTACTGTAGTTCARATATGTTTTTAAAGGTTAATGAGTCTCATAACCCATTAATGGGAATTTTTATTATTTGTTGACGTTTGAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35770</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>105455</contig_pos>
        <strand>+</strand>
        <context>TCAGGGATAC[C/T]GTAGCTCTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGGTTTGGAGTACTGTAGCTCAATATTTTTCTGTTTGTTCAGGGATAC</left_flank>
        <right_flank>GTAGCTCTCTTTCTCCCGCCGCGTCCCTCGCACATCTGTTCCTCCAAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTGCAAAAGGATTACTGTAGTTCAGATATGTTTTTAAAGGTTAATGAGTCTCATAACCCATTAATGGGAATTTTTATTATTTGTTGACGTTTGAGGTTTTTGAACTTGGCTAGTCTAGAATTTTCCGTTTGTTTTGGGATACTGTAGCTCTCCGGGATACTGTAGTTTCCGTCATTTGCGAGTTTTACGTTCGTTCTGGAATACTGTAGCCAAAGGCTTTTTTATTTCCTCTCTGGGATACTGTAGCCTGCTGTTGTTTATTTCAGGTTTGGAGTACTGTAGCTCAATATTTTTCTGTTTGTTCAGGGATACTGTAGCTCTCTTTCTCCCGCCGCGTCCCTCGCACATCTGTTCCTCCAAATCTATTTTTTGAGCTCATTTCCGTACCTTGTGGACTCATCTCACATTATTATTGTTGTACACATCACTAGACACAATTGTTTTTCCAATTTCCCCCGAACTGGAAACAAATATTGTTTCCACTGAAACGGAAATTAATATGTGTGGGAGGGTGTGTCTTCTGGTGCTCCTCCGAGTTGTTCCCTTGGTGACATCCCTCGTGACAGCCATTCTTCACTTTTTTATGGCGCCTTATTTATGATTGAGTCTCTGTTTTTGAATTAGAGTTGGCTAGACATAGGAAACATTCGGGGACGTTTCTTGTTTTTGTGCTTCGTACCTATACGCTTTTTTATAGTTTTCGCTTCCTAGAGCCGCCTGGCTTGGAGAAGTTTAAAATCTCAATTTCCATGAATGCTCTAATGGAACGTCCTTCCCATATGCTCGCGTCTTGAGCTCAATTATCTCGATTCT</canonical>
            <polymorphic>CGCTCTAAGATACTGTAGCCTGACGTTGCTTGTATCAGGTCTAGGGTACTGTAGCTGTTTGTTTTGGAATACTGTAGCTATTTTTCTCGCCCCGTGTCTCTCCCACATATGTTCCAAACCTATTCTTTCAATGCTCATTTCCGTTTTTTTTACTTTGTGACCTATCCGTAGTTGCTCTTTTTCAAAAGTGCAAAAGGATTACTGTAGTTCAGATATGTTTTTAAAGGTTAATGAGTCTCATAACCCATTAATGGGAATTTTTATTATTTGTTGACGTTTGAGGTTTTTGAACTTGGCTAGTCTAGAATTTTCCGTTTGTTTTGGGATACTGTAGCTCTCCGGGATACTGTAGTTTCCGTCATTTGCGAGTTTTACGTTCGTTCTGGAATACTGTAGCCAAAGGCTTTTTTATTTCCTCTCTGGGATACTGTAGCCTGCTGTTGTTTATTTCAGGTTTGGAGTACTGTAGCTCAATATTTTTCTGTTTGTTCAGGGATACYGTAGCTCTCTTTCTCCCGCCGCGTCCCTCGCACATCTGTTCCTCCAAATCTATTTTTTGAGCTCATTTCCGTACCTTGTGGACTCATCTCACATTATTATTGTTGTACACATCACTAGACACAATTGTTTTTCCAATTTCCCCCGAACTGGAAACAAATATTGTTTCCACTGAAACGGAAATTAATATGTGTGGGAGGGTGTGTCTTCTGGTGCTCCTCCGAGTTGTTCCCTTGGTGACATCCCTCGTGACAGCCATTCTTCACTTTTTTATGGCGCCTTATTTATGATTGAGTCTCTGTTTTTGAATTAGAGTTGGCTAGACATAGGAAACATTCGGGGACGTTTCTTGTTTTTGTGCTTCGTACCTATACGCTTTTTTATAGTTTTCGCTTCCTAGAGCCGCCTGGCTTGGAGAAGTTTAAAATCTCAATTTCCATGAATGCTCTAATGGAACGTCCTTCCCATATGCTCGCGTCTTGAGCTCAATTATCTCGATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 130 127 44 37 36 36 35 23 18 13</canonical_bands>
                <polymorphic_bands>536 130 127 44 37 36 36 23 18 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTTTATTTCAGGTTTGGAGTA</pcr_primer_p1>
		<pcr_primer_p2>ACATATTAATTTCCGTTTCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGTTTATTTCAGGTTTGGAGTACTGTAGCTCAATATTTTTCTGTTTGTTCAGGGATACTGTAGCTCTCTTTCTCCCGCCGCGTCCCTCGCACATCTGTTCCTCCAAATCTATTTTTTGAGCTCATTTCCGTACCTTGTGGACTCATCTCACATTATTATTGTTGTACACATCACTAGACACAATTGTTTTTCCAATTTCCCCCGAACTGGAAACAAATATTGTTTCCACTGAAACGGAAATTAATATGT</canonical_amplicon>
		<polymorphic_amplicon>TTGTTTATTTCAGGTTTGGAGTACTGTAGCTCAATATTTTTCTGTTTGTTCAGGGATACYGTAGCTCTCTTTCTCCCGCCGCGTCCCTCGCACATCTGTTCCTCCAAATCTATTTTTTGAGCTCATTTCCGTACCTTGTGGACTCATCTCACATTATTATTGTTGTACACATCACTAGACACAATTGTTTTTCCAATTTCCCCCGAACTGGAAACAAATATTGTTTCCACTGAAACGGAAATTAATATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35771</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>105747</contig_pos>
        <strand>+</strand>
        <context>TTTATGATTG[A/T]GTCTCTGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCCTCGTGACAGCCATTCTTCACTTTTTTATGGCGCCTTATTTATGATTG</left_flank>
        <right_flank>GTCTCTGTTTTTGAATTAGAGTTGGCTAGACATAGGAAACATTCGGGGAC</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGCTAGTCTAGAATTTTCCGTTTGTTTTGGGATACTGTAGCTCTCCGGGATACTGTAGTTTCCGTCATTTGCGAGTTTTACGTTCGTTCTGGAATACTGTAGCCAAAGGCTTTTTTATTTCCTCTCTGGGATACTGTAGCCTGCTGTTGTTTATTTCAGGTTTGGAGTACTGTAGCTCAATATTTTTCTGTTTGTTCAGGGATACTGTAGCTCTCTTTCTCCCGCCGCGTCCCTCGCACATCTGTTCCTCCAAATCTATTTTTTGAGCTCATTTCCGTACCTTGTGGACTCATCTCACATTATTATTGTTGTACACATCACTAGACACAATTGTTTTTCCAATTTCCCCCGAACTGGAAACAAATATTGTTTCCACTGAAACGGAAATTAATATGTGTGGGAGGGTGTGTCTTCTGGTGCTCCTCCGAGTTGTTCCCTTGGTGACATCCCTCGTGACAGCCATTCTTCACTTTTTTATGGCGCCTTATTTATGATTGAGTCTCTGTTTTTGAATTAGAGTTGGCTAGACATAGGAAACATTCGGGGACGTTTCTTGTTTTTGTGCTTCGTACCTATACGCTTTTTTATAGTTTTCGCTTCCTAGAGCCGCCTGGCTTGGAGAAGTTTAAAATCTCAATTTCCATGAATGCTCTAATGGAACGTCCTTCCCATATGCTCGCGTCTTGAGCTCAATTATCTCGATTCTTATAAAAGGTATCAAAAAACTTGCCAACTGATAAAATGTTGCTTAAGTTATGAAAAACATTTTTGTTGTTTACAAATTTTTGAAATCTTTCATAGGAGCGTAGAAATTGAGCTCCAAGTTGAGAGACCCTGCCAAGAAGCCCCCCCCCCCAACTTTGATCTAATTTATCTCGATTCCTATAAAAGCTATCAAAATGTTGTCTATTGATAAAATGTTTATCATAATATCACCTACATTTTTTTAGTTTACAGATTTTTCATTTATCTCGTAAGGACTGAGATAATTGAGCTCA</canonical>
            <polymorphic>TTGGCTAGTCTAGAATTTTCCGTTTGTTTTGGGATACTGTAGCTCTCCGGGATACTGTAGTTTCCGTCATTTGCGAGTTTTACGTTCGTTCTGGAATACTGTAGCCAAAGGCTTTTTTATTTCCTCTCTGGGATACTGTAGCCTGCTGTTGTTTATTTCAGGTTTGGAGTACTGTAGCTCAATATTTTTCTGTTTGTTCAGGGATACTGTAGCTCTCTTTCTCCCGCCGCGTCCCTCGCACATCTGTTCCTCCAAATCTATTTTTTGAGCTCATTTCCGTACCTTGTGGACTCATCTCACATTATTATTGTTGTACACATCACTAGACACAATTGTTTTTCCAATTTCCCCCGAACTGGAAACAAATATTGTTTCCACTGAAACGGAAATTAATATGTGTGGGAGGGTGTGTCTTCTGGTGCTCCTCCGAGTTGTTCCCTTGGTGACATCCCTCGTGACAGCCATTCTTCACTTTTTTATGGCGCCTTATTTATGATTGWGTCTCTGTTTTTGAATTAGAGTTGGCTAGACATAGGAAACATTCGGGGACGTTTCTTGTTTTTGTGCTTCGTACCTATACGCTTTTTTATAGTTTTCGCTTCCTAGAGCCGCCTGGCTTGGAGAAGTTTAAAATCTCAATTTCCATGAATGCTCTAATGGAACGTCCTTCCCATATGCTCGCGTCTTGAGCTCAATTATCTCGATTCTTATAAAAGGTATCAAAAAACTTGCCAACTGATAAAATGTTGCTTAAGTTATGAAAAACATTTTTGTTGTTTACAAATTTTTGAAATCTTTCATAGGAGCGTAGAAATTGAGCTCCAAGTTGAGAGACCCTGCCAAGAAGCCCCCCCCCCCAACTTTGATCTAATTTATCTCGATTCCTATAAAAGCTATCAAAATGTTGTCTATTGATAAAATGTTTATCATAATATCACCTACATTTTTTTAGTTTACAGATTTTTCATTTATCTCGTAAGGACTGAGATAATTGAGCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>289 210 204 177 120</canonical_bands>
                <polymorphic_bands>414 289 177 120</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACACAATTGTTTTTCCAATTTC</pcr_primer_p1>
		<pcr_primer_p2>GTATAGGTACGAAGCACAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ACACAATTGTTTTTCCAATTTCCCCCGAACTGGAAACAAATATTGTTTCCACTGAAACGGAAATTAATATGTGTGGGAGGGTGTGTCTTCTGGTGCTCCTCCGAGTTGTTCCCTTGGTGACATCCCTCGTGACAGCCATTCTTCACTTTTTTATGGCGCCTTATTTATGATTGAGTCTCTGTTTTTGAATTAGAGTTGGCTAGACATAGGAAACATTCGGGGACGTTTCTTGTTTTTGTGCTTCGTACCTATAC</canonical_amplicon>
		<polymorphic_amplicon>ACACAATTGTTTTTCCAATTTCCCCCGAACTGGAAACAAATATTGTTTCCACTGAAACGGAAATTAATATGTGTGGGAGGGTGTGTCTTCTGGTGCTCCTCCGAGTTGTTCCCTTGGTGACATCCCTCGTGACAGCCATTCTTCACTTTTTTATGGCGCCTTATTTATGATTGWGTCTCTGTTTTTGAATTAGAGTTGGCTAGACATAGGAAACATTCGGGGACGTTTCTTGTTTTTGTGCTTCGTACCTATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35772</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>105788</contig_pos>
        <strand>+</strand>
        <context>CATAGGAAAC[A/C]TTCGGGGACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTATGATTGAGTCTCTGTTTTTGAATTAGAGTTGGCTAGACATAGGAAAC</left_flank>
        <right_flank>TTCGGGGACGTTTCTTGTTTTTGTGCTTCGTACCTATACGCTTTTTTATA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCTCCGGGATACTGTAGTTTCCGTCATTTGCGAGTTTTACGTTCGTTCTGGAATACTGTAGCCAAAGGCTTTTTTATTTCCTCTCTGGGATACTGTAGCCTGCTGTTGTTTATTTCAGGTTTGGAGTACTGTAGCTCAATATTTTTCTGTTTGTTCAGGGATACTGTAGCTCTCTTTCTCCCGCCGCGTCCCTCGCACATCTGTTCCTCCAAATCTATTTTTTGAGCTCATTTCCGTACCTTGTGGACTCATCTCACATTATTATTGTTGTACACATCACTAGACACAATTGTTTTTCCAATTTCCCCCGAACTGGAAACAAATATTGTTTCCACTGAAACGGAAATTAATATGTGTGGGAGGGTGTGTCTTCTGGTGCTCCTCCGAGTTGTTCCCTTGGTGACATCCCTCGTGACAGCCATTCTTCACTTTTTTATGGCGCCTTATTTATGATTGAGTCTCTGTTTTTGAATTAGAGTTGGCTAGACATAGGAAACATTCGGGGACGTTTCTTGTTTTTGTGCTTCGTACCTATACGCTTTTTTATAGTTTTCGCTTCCTAGAGCCGCCTGGCTTGGAGAAGTTTAAAATCTCAATTTCCATGAATGCTCTAATGGAACGTCCTTCCCATATGCTCGCGTCTTGAGCTCAATTATCTCGATTCTTATAAAAGGTATCAAAAAACTTGCCAACTGATAAAATGTTGCTTAAGTTATGAAAAACATTTTTGTTGTTTACAAATTTTTGAAATCTTTCATAGGAGCGTAGAAATTGAGCTCCAAGTTGAGAGACCCTGCCAAGAAGCCCCCCCCCCCAACTTTGATCTAATTTATCTCGATTCCTATAAAAGCTATCAAAATGTTGTCTATTGATAAAATGTTTATCATAATATCACCTACATTTTTTTAGTTTACAGATTTTTCATTTATCTCGTAAGGACTGAGATAATTGAGCTCAAAATGCAAGTACAGAAGAGGAGGTCCAACTACCGTACTCCT</canonical>
            <polymorphic>GCTCTCCGGGATACTGTAGTTTCCGTCATTTGCGAGTTTTACGTTCGTTCTGGAATACTGTAGCCAAAGGCTTTTTTATTTCCTCTCTGGGATACTGTAGCCTGCTGTTGTTTATTTCAGGTTTGGAGTACTGTAGCTCAATATTTTTCTGTTTGTTCAGGGATACTGTAGCTCTCTTTCTCCCGCCGCGTCCCTCGCACATCTGTTCCTCCAAATCTATTTTTTGAGCTCATTTCCGTACCTTGTGGACTCATCTCACATTATTATTGTTGTACACATCACTAGACACAATTGTTTTTCCAATTTCCCCCGAACTGGAAACAAATATTGTTTCCACTGAAACGGAAATTAATATGTGTGGGAGGGTGTGTCTTCTGGTGCTCCTCCGAGTTGTTCCCTTGGTGACATCCCTCGTGACAGCCATTCTTCACTTTTTTATGGCGCCTTATTTATGATTGAGTCTCTGTTTTTGAATTAGAGTTGGCTAGACATAGGAAACMTTCGGGGACGTTTCTTGTTTTTGTGCTTCGTACCTATACGCTTTTTTATAGTTTTCGCTTCCTAGAGCCGCCTGGCTTGGAGAAGTTTAAAATCTCAATTTCCATGAATGCTCTAATGGAACGTCCTTCCCATATGCTCGCGTCTTGAGCTCAATTATCTCGATTCTTATAAAAGGTATCAAAAAACTTGCCAACTGATAAAATGTTGCTTAAGTTATGAAAAACATTTTTGTTGTTTACAAATTTTTGAAATCTTTCATAGGAGCGTAGAAATTGAGCTCCAAGTTGAGAGACCCTGCCAAGAAGCCCCCCCCCCCAACTTTGATCTAATTTATCTCGATTCCTATAAAAGCTATCAAAATGTTGTCTATTGATAAAATGTTTATCATAATATCACCTACATTTTTTTAGTTTACAGATTTTTCATTTATCTCGTAAGGACTGAGATAATTGAGCTCAAAATGCAAGTACAGAAGAGGAGGTCCAACTACCGTACTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATATGTGTGGGAGGGTGT</pcr_primer_p1>
		<pcr_primer_p2>CATTCATGGAAATTGAGATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>TAATATGTGTGGGAGGGTGTGTCTTCTGGTGCTCCTCCGAGTTGTTCCCTTGGTGACATCCCTCGTGACAGCCATTCTTCACTTTTTTATGGCGCCTTATTTATGATTGAGTCTCTGTTTTTGAATTAGAGTTGGCTAGACATAGGAAACATTCGGGGACGTTTCTTGTTTTTGTGCTTCGTACCTATACGCTTTTTTATAGTTTTCGCTTCCTAGAGCCGCCTGGCTTGGAGAAGTTTAAAATCTCAATTTCCATGAATG</canonical_amplicon>
		<polymorphic_amplicon>TAATATGTGTGGGAGGGTGTGTCTTCTGGTGCTCCTCCGAGTTGTTCCCTTGGTGACATCCCTCGTGACAGCCATTCTTCACTTTTTTATGGCGCCTTATTTATGATTGAGTCTCTGTTTTTGAATTAGAGTTGGCTAGACATAGGAAACMTTCGGGGACGTTTCTTGTTTTTGTGCTTCGTACCTATACGCTTTTTTATAGTTTTCGCTTCCTAGAGCCGCCTGGCTTGGAGAAGTTTAAAATCTCAATTTCCATGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35773</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>105843</contig_pos>
        <strand></strand>
        <context>TTTATAGTTT[T/C]CGCTTCCTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGGACGTTTCTTGTTTTTGTGCTTCGTACCTATACGCTTTTTTATAGTTT</left_flank>
        <right_flank>CGCTTCCTAGAGCCGCCTGGCTTGGAGAAGTTTAAAATCTCAATTTCCAT</right_flank>
        <qual_score>35</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTGTAGCCAAAGGCTTTTTTATTTCCTCTCTGGGATACTGTAGCCTGCTGTTGTTTATTTCAGGTTTGGAGTACTGTAGCTCAATATTTTTCTGTTTGTTCAGGGATACTGTAGCTCTCTTTCTCCCGCCGCGTCCCTCGCACATCTGTTCCTCCAAATCTATTTTTTGAGCTCATTTCCGTACCTTGTGGACTCATCTCACATTATTATTGTTGTACACATCACTAGACACAATTGTTTTTCCAATTTCCCCCGAACTGGAAACAAATATTGTTTCCACTGAAACGGAAATTAATATGTGTGGGAGGGTGTGTCTTCTGGTGCTCCTCCGAGTTGTTCCCTTGGTGACATCCCTCGTGACAGCCATTCTTCACTTTTTTATGGCGCCTTATTTATGATTGAGTCTCTGTTTTTGAATTAGAGTTGGCTAGACATAGGAAACATTCGGGGACGTTTCTTGTTTTTGTGCTTCGTACCTATACGCTTTTTTATAGTTTTCGCTTCCTAGAGCCGCCTGGCTTGGAGAAGTTTAAAATCTCAATTTCCATGAATGCTCTAATGGAACGTCCTTCCCATATGCTCGCGTCTTGAGCTCAATTATCTCGATTCTTATAAAAGGTATCAAAAAACTTGCCAACTGATAAAATGTTGCTTAAGTTATGAAAAACATTTTTGTTGTTTACAAATTTTTGAAATCTTTCATAGGAGCGTAGAAATTGAGCTCCAAGTTGAGAGACCCTGCCAAGAAGCCCCCCCCCCCAACTTTGATCTAATTTATCTCGATTCCTATAAAAGCTATCAAAATGTTGTCTATTGATAAAATGTTTATCATAATATCACCTACATTTTTTTAGTTTACAGATTTTTCATTTATCTCGTAAGGACTGAGATAATTGAGCTCAAAATGCAAGTACAGAAGAGGAGGTCCAACTACCGTACTCCTCTCCTATGCGCCTTTGATGGCTTTTTTTTCTGTTCGCTATCCCGCTGCTTGAAAA</canonical>
            <polymorphic>TACTGTAGCCAAAGGCTTTTTTATTTCCTCTCTGGGATACTGTAGCCTGCTGTTGTTTATTTCAGGTTTGGAGTACTGTAGCTCAATATTTTTCTGTTTGTTCAGGGATACTGTAGCTCTCTTTCTCCCGCCGCGTCCCTCGCACATCTGTTCCTCCAAATCTATTTTTTGAGCTCATTTCCGTACCTTGTGGACTCATCTCACATTATTATTGTTGTACACATCACTAGACACAATTGTTTTTCCAATTTCCCCCGAACTGGAAACAAATATTGTTTCCACTGAAACGGAAATTAATATGTGTGGGAGGGTGTGTCTTCTGGTGCTCCTCCGAGTTGTTCCCTTGGTGACATCCCTCGTGACAGCCATTCTTCACTTTTTTATGGCGCCTTATTTATGATTGAGTCTCTGTTTTTGAATTAGAGTTGGCTAGACATAGGAAACATTCGGGGACGTTTCTTGTTTTTGTGCTTCGTACCTATACGCTTTTTTATAGTTTYCGCTTCCTAGAGCCGCCTGGCTTGGAGAAGTTTAAAATCTCAATTTCCATGAATGCTCTAATGGAACGTCCTTCCCATATGCTCGCGTCTTGAGCTCAATTATCTCGATTCTTATAAAAGGTATCAAAAAACTTGCCAACTGATAAAATGTTGCTTAAGTTATGAAAAACATTTTTGTTGTTTACAAATTTTTGAAATCTTTCATAGGAGCGTAGAAATTGAGCTCCAAGTTGAGAGACCCTGCCAAGAAGCCCCCCCCCCCAACTTTGATCTAATTTATCTCGATTCCTATAAAAGCTATCAAAATGTTGTCTATTGATAAAATGTTTATCATAATATCACCTACATTTTTTTAGTTTACAGATTTTTCATTTATCTCGTAAGGACTGAGATAATTGAGCTCAAAATGCAAGTACAGAAGAGGAGGTCCAACTACCGTACTCCTCTCCTATGCGCCTTTGATGGCTTTTTTTTCTGTTCGCTATCCCGCTGCTTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATATGTGTGGGAGGGTGT</pcr_primer_p1>
		<pcr_primer_p2>CATTCATGGAAATTGAGATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>TAATATGTGTGGGAGGGTGTGTCTTCTGGTGCTCCTCCGAGTTGTTCCCTTGGTGACATCCCTCGTGACAGCCATTCTTCACTTTTTTATGGCGCCTTATTTATGATTGAGTCTCTGTTTTTGAATTAGAGTTGGCTAGACATAGGAAACATTCGGGGACGTTTCTTGTTTTTGTGCTTCGTACCTATACGCTTTTTTATAGTTTTCGCTTCCTAGAGCCGCCTGGCTTGGAGAAGTTTAAAATCTCAATTTCCATGAATG</canonical_amplicon>
		<polymorphic_amplicon>TAATATGTGTGGGAGGGTGTGTCTTCTGGTGCTCCTCCGAGTTGTTCCCTTGGTGACATCCCTCGTGACAGCCATTCTTCACTTTTTTATGGCGCCTTATTTATGATTGAGTCTCTGTTTTTGAATTAGAGTTGGCTAGACATAGGAAACATTCGGGGACGTTTCTTGTTTTTGTGCTTCGTACCTATACGCTTTTTTATAGTTTYCGCTTCCTAGAGCCGCCTGGCTTGGAGAAGTTTAAAATCTCAATTTCCATGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35774</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>136191</contig_pos>
        <strand></strand>
        <context>aaaaaagggt[A/G]gactgataaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGT</left_flank>
        <right_flank>GACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCCCGGTGACCTAACTCGGCACCTCTTATTATAACGCTACAAGATTCAACTAGCTGTAGCGAGTAGCTGAGAAAGGAACTTGATAACTTACATCCAAATCAAATCGTCATCCTTTTGAATTCTTTTCCGATAGGCCTTGTTAAGGACGGAGCCCATCGCGACGAGTTGAAACTAAAAGTGAAAGTGGGAGAGAAAGCGGCGGGAGGGAAATGTATTCTCCATGCCAACCTCCTGACACACACTCATTAGCGTCATAAATCCTCGTGAGCTTCTAAACGTAGTTTGACTCACTTCTGTTTTTCGTATAGTCGGGAAAGTAAAGAAATCAGGCTAATTATGACCCTGGAGAGATTCTTATAACGCAAATCAGGCTGAGGTTGGTCAGGCTGGCAGAGGAGAGGCGAGCCTGGTGCGCAATAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACATTTTACAAGAGAGAAATGAATGAATGATATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTTTCACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATGTCAACCTTGTTC</canonical>
            <polymorphic>TTCCCCGGTGACCTAACTCGGCACCTCTTATTATAACGCTACAAGATTCAACTAGCTGTAGCGAGTAGCTGAGAAAGGAACTTGATAACTTACATCCAAATCAAATCGTCATCCTTTTGAATTCTTTTCCGATAGGCCTTGTTAAGGACGGAGCCCATCGCGACGAGTTGAAACTAAAAGTGAAAGTGGGAGAGAAAGCGGCGGGAGGGAAATGTATTCTCCATGCCAACCTCCTGACACACACTCATTAGCGTCATAAATCCTCGTGAGCTTCTAAACGTAGTTTGACTCACTTCTGTTTTTCGTATAGTCGGGAAAGTAAAGAAATCAGGCTAATTATGACCCTGGAGAGATTCTTATAACGCAAATCAGGCTGAGGTTGGTCAGGCTGGCAGAGGAGAGGCGAGCCTGGTGCGCAATAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTRGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACATTTTACAAGAGAGAAATGAATGAATGATATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTTTCACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATGTCAACCTTGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATGGTACCCAGTCTTGTGA</pcr_primer_p1>
		<pcr_primer_p2>TGTGATAACTTTTGAACTTTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>438</pcr_amplicon_size>
		<canonical_amplicon>TAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACA</canonical_amplicon>
		<polymorphic_amplicon>TAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTRGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35775</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>136259</contig_pos>
        <strand></strand>
        <context>atatatctta[C/T]agtaatcgag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTA</left_flank>
        <right_flank>AGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAGAAAGGAACTTGATAACTTACATCCAAATCAAATCGTCATCCTTTTGAATTCTTTTCCGATAGGCCTTGTTAAGGACGGAGCCCATCGCGACGAGTTGAAACTAAAAGTGAAAGTGGGAGAGAAAGCGGCGGGAGGGAAATGTATTCTCCATGCCAACCTCCTGACACACACTCATTAGCGTCATAAATCCTCGTGAGCTTCTAAACGTAGTTTGACTCACTTCTGTTTTTCGTATAGTCGGGAAAGTAAAGAAATCAGGCTAATTATGACCCTGGAGAGATTCTTATAACGCAAATCAGGCTGAGGTTGGTCAGGCTGGCAGAGGAGAGGCGAGCCTGGTGCGCAATAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACATTTTACAAGAGAGAAATGAATGAATGATATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTTTCACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATGTCAACCTTGTTCTTATTCTCCAGCTCCATCTTCTTCTTGGCGGCTCTGAGATAAATCGAATTTTGAAAATCTGGATGTCT</canonical>
            <polymorphic>CTGAGAAAGGAACTTGATAACTTACATCCAAATCAAATCGTCATCCTTTTGAATTCTTTTCCGATAGGCCTTGTTAAGGACGGAGCCCATCGCGACGAGTTGAAACTAAAAGTGAAAGTGGGAGAGAAAGCGGCGGGAGGGAAATGTATTCTCCATGCCAACCTCCTGACACACACTCATTAGCGTCATAAATCCTCGTGAGCTTCTAAACGTAGTTTGACTCACTTCTGTTTTTCGTATAGTCGGGAAAGTAAAGAAATCAGGCTAATTATGACCCTGGAGAGATTCTTATAACGCAAATCAGGCTGAGGTTGGTCAGGCTGGCAGAGGAGAGGCGAGCCTGGTGCGCAATAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTAYAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACATTTTACAAGAGAGAAATGAATGAATGATATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTTTCACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATGTCAACCTTGTTCTTATTCTCCAGCTCCATCTTCTTCTTGGCGGCTCTGAGATAAATCGAATTTTGAAAATCTGGATGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATGGTACCCAGTCTTGTGA</pcr_primer_p1>
		<pcr_primer_p2>TGTGATAACTTTTGAACTTTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>438</pcr_amplicon_size>
		<canonical_amplicon>TAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACA</canonical_amplicon>
		<polymorphic_amplicon>TAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTAYAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35776</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>136276</contig_pos>
        <strand></strand>
        <context>cgagatacat[T/G]ttgtcaaagt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACAT</left_flank>
        <right_flank>TTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACTTACATCCAAATCAAATCGTCATCCTTTTGAATTCTTTTCCGATAGGCCTTGTTAAGGACGGAGCCCATCGCGACGAGTTGAAACTAAAAGTGAAAGTGGGAGAGAAAGCGGCGGGAGGGAAATGTATTCTCCATGCCAACCTCCTGACACACACTCATTAGCGTCATAAATCCTCGTGAGCTTCTAAACGTAGTTTGACTCACTTCTGTTTTTCGTATAGTCGGGAAAGTAAAGAAATCAGGCTAATTATGACCCTGGAGAGATTCTTATAACGCAAATCAGGCTGAGGTTGGTCAGGCTGGCAGAGGAGAGGCGAGCCTGGTGCGCAATAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACATTTTACAAGAGAGAAATGAATGAATGATATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTTTCACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATGTCAACCTTGTTCTTATTCTCCAGCTCCATCTTCTTCTTGGCGGCTCTGAGATAAATCGAATTTTGAAAATCTGGATGTCTAGGAATATAGGAATCTA</canonical>
            <polymorphic>TAACTTACATCCAAATCAAATCGTCATCCTTTTGAATTCTTTTCCGATAGGCCTTGTTAAGGACGGAGCCCATCGCGACGAGTTGAAACTAAAAGTGAAAGTGGGAGAGAAAGCGGCGGGAGGGAAATGTATTCTCCATGCCAACCTCCTGACACACACTCATTAGCGTCATAAATCCTCGTGAGCTTCTAAACGTAGTTTGACTCACTTCTGTTTTTCGTATAGTCGGGAAAGTAAAGAAATCAGGCTAATTATGACCCTGGAGAGATTCTTATAACGCAAATCAGGCTGAGGTTGGTCAGGCTGGCAGAGGAGAGGCGAGCCTGGTGCGCAATAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATKTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACATTTTACAAGAGAGAAATGAATGAATGATATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTTTCACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATGTCAACCTTGTTCTTATTCTCCAGCTCCATCTTCTTCTTGGCGGCTCTGAGATAAATCGAATTTTGAAAATCTGGATGTCTAGGAATATAGGAATCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATGGTACCCAGTCTTGTGA</pcr_primer_p1>
		<pcr_primer_p2>TGTGATAACTTTTGAACTTTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>438</pcr_amplicon_size>
		<canonical_amplicon>TAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACA</canonical_amplicon>
		<polymorphic_amplicon>TAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATKTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35777</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>136296</contig_pos>
        <strand></strand>
        <context>ttgataaggc[C/T]ttccttTGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGC</left_flank>
        <right_flank>TTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGTCATCCTTTTGAATTCTTTTCCGATAGGCCTTGTTAAGGACGGAGCCCATCGCGACGAGTTGAAACTAAAAGTGAAAGTGGGAGAGAAAGCGGCGGGAGGGAAATGTATTCTCCATGCCAACCTCCTGACACACACTCATTAGCGTCATAAATCCTCGTGAGCTTCTAAACGTAGTTTGACTCACTTCTGTTTTTCGTATAGTCGGGAAAGTAAAGAAATCAGGCTAATTATGACCCTGGAGAGATTCTTATAACGCAAATCAGGCTGAGGTTGGTCAGGCTGGCAGAGGAGAGGCGAGCCTGGTGCGCAATAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACATTTTACAAGAGAGAAATGAATGAATGATATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTTTCACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATGTCAACCTTGTTCTTATTCTCCAGCTCCATCTTCTTCTTGGCGGCTCTGAGATAAATCGAATTTTGAAAATCTGGATGTCTAGGAATATAGGAATCTAGGAATCTAGAAATCTAGGAA</canonical>
            <polymorphic>TCGTCATCCTTTTGAATTCTTTTCCGATAGGCCTTGTTAAGGACGGAGCCCATCGCGACGAGTTGAAACTAAAAGTGAAAGTGGGAGAGAAAGCGGCGGGAGGGAAATGTATTCTCCATGCCAACCTCCTGACACACACTCATTAGCGTCATAAATCCTCGTGAGCTTCTAAACGTAGTTTGACTCACTTCTGTTTTTCGTATAGTCGGGAAAGTAAAGAAATCAGGCTAATTATGACCCTGGAGAGATTCTTATAACGCAAATCAGGCTGAGGTTGGTCAGGCTGGCAGAGGAGAGGCGAGCCTGGTGCGCAATAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCYTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACATTTTACAAGAGAGAAATGAATGAATGATATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTTTCACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATGTCAACCTTGTTCTTATTCTCCAGCTCCATCTTCTTCTTGGCGGCTCTGAGATAAATCGAATTTTGAAAATCTGGATGTCTAGGAATATAGGAATCTAGGAATCTAGAAATCTAGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGGCCT</site>
                <isoschizomers>
                    <enzyme>AatI</enzyme>
                    <enzyme>Eco147I</enzyme>
                    <enzyme>PceI</enzyme>
                    <enzyme>SseBI</enzyme>
                    <enzyme>StuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 467 31</canonical_bands>
                <polymorphic_bands>969 31</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>467 317 73 49 33 31 12 8 6 4</canonical_bands>
                <polymorphic_bands>500 317 73 49 31 12 8 6 4</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>196 142 117 74 67 62 53 49 41 31 20 19 18 17 16 15 15 14 12 8 6 4 4</canonical_bands>
                <polymorphic_bands>214 142 117 74 67 62 53 49 41 31 20 19 17 16 15 15 14 12 8 6 4 4</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 467 31</canonical_bands>
                <polymorphic_bands>969 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATGGTACCCAGTCTTGTGA</pcr_primer_p1>
		<pcr_primer_p2>TGTGATAACTTTTGAACTTTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>438</pcr_amplicon_size>
		<canonical_amplicon>TAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACA</canonical_amplicon>
		<polymorphic_amplicon>TAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCYTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35778</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>136348</contig_pos>
        <strand></strand>
        <context>ccgtgattga[G/A]gccgtcggtg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGA</left_flank>
        <right_flank>GCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGCGACGAGTTGAAACTAAAAGTGAAAGTGGGAGAGAAAGCGGCGGGAGGGAAATGTATTCTCCATGCCAACCTCCTGACACACACTCATTAGCGTCATAAATCCTCGTGAGCTTCTAAACGTAGTTTGACTCACTTCTGTTTTTCGTATAGTCGGGAAAGTAAAGAAATCAGGCTAATTATGACCCTGGAGAGATTCTTATAACGCAAATCAGGCTGAGGTTGGTCAGGCTGGCAGAGGAGAGGCGAGCCTGGTGCGCAATAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACATTTTACAAGAGAGAAATGAATGAATGATATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTTTCACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATGTCAACCTTGTTCTTATTCTCCAGCTCCATCTTCTTCTTGGCGGCTCTGAGATAAATCGAATTTTGAAAATCTGGATGTCTAGGAATATAGGAATCTAGGAATCTAGAAATCTAGGAATCTAGGAATCTAGGAAGTCAGGAACCCAGGGATCCAGGAATCCAAAAGTCCA</canonical>
            <polymorphic>TCGCGACGAGTTGAAACTAAAAGTGAAAGTGGGAGAGAAAGCGGCGGGAGGGAAATGTATTCTCCATGCCAACCTCCTGACACACACTCATTAGCGTCATAAATCCTCGTGAGCTTCTAAACGTAGTTTGACTCACTTCTGTTTTTCGTATAGTCGGGAAAGTAAAGAAATCAGGCTAATTATGACCCTGGAGAGATTCTTATAACGCAAATCAGGCTGAGGTTGGTCAGGCTGGCAGAGGAGAGGCGAGCCTGGTGCGCAATAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGARGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACATTTTACAAGAGAGAAATGAATGAATGATATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTTTCACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATGTCAACCTTGTTCTTATTCTCCAGCTCCATCTTCTTCTTGGCGGCTCTGAGATAAATCGAATTTTGAAAATCTGGATGTCTAGGAATATAGGAATCTAGGAATCTAGAAATCTAGGAATCTAGGAATCTAGGAAGTCAGGAACCCAGGGATCCAGGAATCCAAAAGTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>446 369 73 49 33 12 8 6 4</canonical_bands>
                <polymorphic_bands>446 369 85 49 33 8 6 4</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>196 142 126 113 67 62 53 49 41 20 19 18 16 15 15 14 12 8 6 4 4</canonical_bands>
                <polymorphic_bands>196 142 126 113 67 65 62 49 41 20 19 18 16 15 15 14 8 6 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATGGTACCCAGTCTTGTGA</pcr_primer_p1>
		<pcr_primer_p2>TGTGATAACTTTTGAACTTTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>438</pcr_amplicon_size>
		<canonical_amplicon>TAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACA</canonical_amplicon>
		<polymorphic_amplicon>TAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGARGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35779</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>136371</contig_pos>
        <strand></strand>
        <context>ttaccatgga[T/C]caatcagtcc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGA</left_flank>
        <right_flank>CAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAAGTGGGAGAGAAAGCGGCGGGAGGGAAATGTATTCTCCATGCCAACCTCCTGACACACACTCATTAGCGTCATAAATCCTCGTGAGCTTCTAAACGTAGTTTGACTCACTTCTGTTTTTCGTATAGTCGGGAAAGTAAAGAAATCAGGCTAATTATGACCCTGGAGAGATTCTTATAACGCAAATCAGGCTGAGGTTGGTCAGGCTGGCAGAGGAGAGGCGAGCCTGGTGCGCAATAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACATTTTACAAGAGAGAAATGAATGAATGATATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTTTCACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATGTCAACCTTGTTCTTATTCTCCAGCTCCATCTTCTTCTTGGCGGCTCTGAGATAAATCGAATTTTGAAAATCTGGATGTCTAGGAATATAGGAATCTAGGAATCTAGAAATCTAGGAATCTAGGAATCTAGGAAGTCAGGAACCCAGGGATCCAGGAATCCAAAAGTCCATAAATTCAAAAATACAGAAATCT</canonical>
            <polymorphic>TGAAAGTGGGAGAGAAAGCGGCGGGAGGGAAATGTATTCTCCATGCCAACCTCCTGACACACACTCATTAGCGTCATAAATCCTCGTGAGCTTCTAAACGTAGTTTGACTCACTTCTGTTTTTCGTATAGTCGGGAAAGTAAAGAAATCAGGCTAATTATGACCCTGGAGAGATTCTTATAACGCAAATCAGGCTGAGGTTGGTCAGGCTGGCAGAGGAGAGGCGAGCCTGGTGCGCAATAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGAYCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACATTTTACAAGAGAGAAATGAATGAATGATATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTTTCACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATGTCAACCTTGTTCTTATTCTCCAGCTCCATCTTCTTCTTGGCGGCTCTGAGATAAATCGAATTTTGAAAATCTGGATGTCTAGGAATATAGGAATCTAGGAATCTAGAAATCTAGGAATCTAGGAATCTAGGAAGTCAGGAACCCAGGGATCCAGGAATCCAAAAGTCCATAAATTCAAAAATACAGAAATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>497 271 177 45 10</canonical_bands>
                <polymorphic_bands>768 177 45 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATGGTACCCAGTCTTGTGA</pcr_primer_p1>
		<pcr_primer_p2>TGTGATAACTTTTGAACTTTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>438</pcr_amplicon_size>
		<canonical_amplicon>TAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACA</canonical_amplicon>
		<polymorphic_amplicon>TAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGAYCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35780</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>136394</contig_pos>
        <strand></strand>
        <context>tctttcgaaa[T/C]amgctcagcc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAA</left_flank>
        <right_flank>ACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGGGAAATGTATTCTCCATGCCAACCTCCTGACACACACTCATTAGCGTCATAAATCCTCGTGAGCTTCTAAACGTAGTTTGACTCACTTCTGTTTTTCGTATAGTCGGGAAAGTAAAGAAATCAGGCTAATTATGACCCTGGAGAGATTCTTATAACGCAAATCAGGCTGAGGTTGGTCAGGCTGGCAGAGGAGAGGCGAGCCTGGTGCGCAATAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACATTTTACAAGAGAGAAATGAATGAATGATATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTTTCACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATGTCAACCTTGTTCTTATTCTCCAGCTCCATCTTCTTCTTGGCGGCTCTGAGATAAATCGAATTTTGAAAATCTGGATGTCTAGGAATATAGGAATCTAGGAATCTAGAAATCTAGGAATCTAGGAATCTAGGAAGTCAGGAACCCAGGGATCCAGGAATCCAAAAGTCCATAAATTCAAAAATACAGAAATCTCGGAATACAGGAATCTGTGAATC</canonical>
            <polymorphic>GGAGGGAAATGTATTCTCCATGCCAACCTCCTGACACACACTCATTAGCGTCATAAATCCTCGTGAGCTTCTAAACGTAGTTTGACTCACTTCTGTTTTTCGTATAGTCGGGAAAGTAAAGAAATCAGGCTAATTATGACCCTGGAGAGATTCTTATAACGCAAATCAGGCTGAGGTTGGTCAGGCTGGCAGAGGAGAGGCGAGCCTGGTGCGCAATAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAAYACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACATTTTACAAGAGAGAAATGAATGAATGATATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTTTCACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATGTCAACCTTGTTCTTATTCTCCAGCTCCATCTTCTTCTTGGCGGCTCTGAGATAAATCGAATTTTGAAAATCTGGATGTCTAGGAATATAGGAATCTAGGAATCTAGAAATCTAGGAATCTAGGAATCTAGGAAGTCAGGAACCCAGGGATCCAGGAATCCAAAAGTCCATAAATTCAAAAATACAGAAATCTCGGAATACAGGAATCTGTGAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATGGTACCCAGTCTTGTGA</pcr_primer_p1>
		<pcr_primer_p2>TGTGATAACTTTTGAACTTTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>438</pcr_amplicon_size>
		<canonical_amplicon>TAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACA</canonical_amplicon>
		<polymorphic_amplicon>TAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAAYACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35781</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>136396</contig_pos>
        <strand></strand>
        <context>tttcgaaaya[C/A]gctcagccag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATA</left_flank>
        <right_flank>GCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGGAAATGTATTCTCCATGCCAACCTCCTGACACACACTCATTAGCGTCATAAATCCTCGTGAGCTTCTAAACGTAGTTTGACTCACTTCTGTTTTTCGTATAGTCGGGAAAGTAAAGAAATCAGGCTAATTATGACCCTGGAGAGATTCTTATAACGCAAATCAGGCTGAGGTTGGTCAGGCTGGCAGAGGAGAGGCGAGCCTGGTGCGCAATAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACATTTTACAAGAGAGAAATGAATGAATGATATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTTTCACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATGTCAACCTTGTTCTTATTCTCCAGCTCCATCTTCTTCTTGGCGGCTCTGAGATAAATCGAATTTTGAAAATCTGGATGTCTAGGAATATAGGAATCTAGGAATCTAGAAATCTAGGAATCTAGGAATCTAGGAAGTCAGGAACCCAGGGATCCAGGAATCCAAAAGTCCATAAATTCAAAAATACAGAAATCTCGGAATACAGGAATCTGTGAATCCA</canonical>
            <polymorphic>AGGGAAATGTATTCTCCATGCCAACCTCCTGACACACACTCATTAGCGTCATAAATCCTCGTGAGCTTCTAAACGTAGTTTGACTCACTTCTGTTTTTCGTATAGTCGGGAAAGTAAAGAAATCAGGCTAATTATGACCCTGGAGAGATTCTTATAACGCAAATCAGGCTGAGGTTGGTCAGGCTGGCAGAGGAGAGGCGAGCCTGGTGCGCAATAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATAMGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACATTTTACAAGAGAGAAATGAATGAATGATATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTTTCACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATGTCAACCTTGTTCTTATTCTCCAGCTCCATCTTCTTCTTGGCGGCTCTGAGATAAATCGAATTTTGAAAATCTGGATGTCTAGGAATATAGGAATCTAGGAATCTAGAAATCTAGGAATCTAGGAATCTAGGAAGTCAGGAACCCAGGGATCCAGGAATCCAAAAGTCCATAAATTCAAAAATACAGAAATCTCGGAATACAGGAATCTGTGAATCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATGGTACCCAGTCTTGTGA</pcr_primer_p1>
		<pcr_primer_p2>TGTGATAACTTTTGAACTTTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>438</pcr_amplicon_size>
		<canonical_amplicon>TAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACA</canonical_amplicon>
		<polymorphic_amplicon>TAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATAMGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35782</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>136421</contig_pos>
        <strand></strand>
        <context>aaactatcag[G/A]gccgctaggc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAG</left_flank>
        <right_flank>GCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCTGACACACACTCATTAGCGTCATAAATCCTCGTGAGCTTCTAAACGTAGTTTGACTCACTTCTGTTTTTCGTATAGTCGGGAAAGTAAAGAAATCAGGCTAATTATGACCCTGGAGAGATTCTTATAACGCAAATCAGGCTGAGGTTGGTCAGGCTGGCAGAGGAGAGGCGAGCCTGGTGCGCAATAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACATTTTACAAGAGAGAAATGAATGAATGATATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTTTCACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATGTCAACCTTGTTCTTATTCTCCAGCTCCATCTTCTTCTTGGCGGCTCTGAGATAAATCGAATTTTGAAAATCTGGATGTCTAGGAATATAGGAATCTAGGAATCTAGAAATCTAGGAATCTAGGAATCTAGGAAGTCAGGAACCCAGGGATCCAGGAATCCAAAAGTCCATAAATTCAAAAATACAGAAATCTCGGAATACAGGAATCTGTGAATCCAGGAATCCAGGAATTCAGGAATCCAG</canonical>
            <polymorphic>CTCCTGACACACACTCATTAGCGTCATAAATCCTCGTGAGCTTCTAAACGTAGTTTGACTCACTTCTGTTTTTCGTATAGTCGGGAAAGTAAAGAAATCAGGCTAATTATGACCCTGGAGAGATTCTTATAACGCAAATCAGGCTGAGGTTGGTCAGGCTGGCAGAGGAGAGGCGAGCCTGGTGCGCAATAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGRGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACATTTTACAAGAGAGAAATGAATGAATGATATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTTTCACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATGTCAACCTTGTTCTTATTCTCCAGCTCCATCTTCTTCTTGGCGGCTCTGAGATAAATCGAATTTTGAAAATCTGGATGTCTAGGAATATAGGAATCTAGGAATCTAGAAATCTAGGAATCTAGGAATCTAGGAAGTCAGGAACCCAGGGATCCAGGAATCCAAAAGTCCATAAATTCAAAAATACAGAAATCTCGGAATACAGGAATCTGTGAATCCAGGAATCCAGGAATTCAGGAATCCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>443 404 95 58</canonical_bands>
                <polymorphic_bands>443 404 153</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>442 373 73 49 33 12 8 6 4</canonical_bands>
                <polymorphic_bands>442 373 81 49 33 12 6 4</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>199 196 142 67 62 53 49 41 40 20 19 18 16 15 15 14 12 8 6 4 4</canonical_bands>
                <polymorphic_bands>199 196 142 67 62 53 49 41 40 24 20 19 18 15 15 14 12 6 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATGGTACCCAGTCTTGTGA</pcr_primer_p1>
		<pcr_primer_p2>TGTGATAACTTTTGAACTTTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>438</pcr_amplicon_size>
		<canonical_amplicon>TAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACA</canonical_amplicon>
		<polymorphic_amplicon>TAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGRGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35783</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>136444</contig_pos>
        <strand></strand>
        <context>ccgaatccta[C/T]ctatttcaga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTA</left_flank>
        <right_flank>CTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATAAATCCTCGTGAGCTTCTAAACGTAGTTTGACTCACTTCTGTTTTTCGTATAGTCGGGAAAGTAAAGAAATCAGGCTAATTATGACCCTGGAGAGATTCTTATAACGCAAATCAGGCTGAGGTTGGTCAGGCTGGCAGAGGAGAGGCGAGCCTGGTGCGCAATAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACATTTTACAAGAGAGAAATGAATGAATGATATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTTTCACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATGTCAACCTTGTTCTTATTCTCCAGCTCCATCTTCTTCTTGGCGGCTCTGAGATAAATCGAATTTTGAAAATCTGGATGTCTAGGAATATAGGAATCTAGGAATCTAGAAATCTAGGAATCTAGGAATCTAGGAAGTCAGGAACCCAGGGATCCAGGAATCCAAAAGTCCATAAATTCAAAAATACAGAAATCTCGGAATACAGGAATCTGTGAATCCAGGAATCCAGGAATTCAGGAATCCAGAAATTTAGGAATCCAGGAATCTA</canonical>
            <polymorphic>TCATAAATCCTCGTGAGCTTCTAAACGTAGTTTGACTCACTTCTGTTTTTCGTATAGTCGGGAAAGTAAAGAAATCAGGCTAATTATGACCCTGGAGAGATTCTTATAACGCAAATCAGGCTGAGGTTGGTCAGGCTGGCAGAGGAGAGGCGAGCCTGGTGCGCAATAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTAYCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACATTTTACAAGAGAGAAATGAATGAATGATATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTTTCACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATGTCAACCTTGTTCTTATTCTCCAGCTCCATCTTCTTCTTGGCGGCTCTGAGATAAATCGAATTTTGAAAATCTGGATGTCTAGGAATATAGGAATCTAGGAATCTAGAAATCTAGGAATCTAGGAATCTAGGAAGTCAGGAACCCAGGGATCCAGGAATCCAAAAGTCCATAAATTCAAAAATACAGAAATCTCGGAATACAGGAATCTGTGAATCCAGGAATCCAGGAATTCAGGAATCCAGAAATTTAGGAATCCAGGAATCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATGGTACCCAGTCTTGTGA</pcr_primer_p1>
		<pcr_primer_p2>TGTGATAACTTTTGAACTTTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>438</pcr_amplicon_size>
		<canonical_amplicon>TAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACA</canonical_amplicon>
		<polymorphic_amplicon>TAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTAYCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35784</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>136480</contig_pos>
        <strand></strand>
        <context>aatgcctcgg[C/G]ccaaattcga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGG</left_flank>
        <right_flank>CCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACTTCTGTTTTTCGTATAGTCGGGAAAGTAAAGAAATCAGGCTAATTATGACCCTGGAGAGATTCTTATAACGCAAATCAGGCTGAGGTTGGTCAGGCTGGCAGAGGAGAGGCGAGCCTGGTGCGCAATAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACATTTTACAAGAGAGAAATGAATGAATGATATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTTTCACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATGTCAACCTTGTTCTTATTCTCCAGCTCCATCTTCTTCTTGGCGGCTCTGAGATAAATCGAATTTTGAAAATCTGGATGTCTAGGAATATAGGAATCTAGGAATCTAGAAATCTAGGAATCTAGGAATCTAGGAAGTCAGGAACCCAGGGATCCAGGAATCCAAAAGTCCATAAATTCAAAAATACAGAAATCTCGGAATACAGGAATCTGTGAATCCAGGAATCCAGGAATTCAGGAATCCAGAAATTTAGGAATCCAGGAATCTAGGAATCCAAACACTCCGAAGTATTTTTTTTTAATTT</canonical>
            <polymorphic>TCACTTCTGTTTTTCGTATAGTCGGGAAAGTAAAGAAATCAGGCTAATTATGACCCTGGAGAGATTCTTATAACGCAAATCAGGCTGAGGTTGGTCAGGCTGGCAGAGGAGAGGCGAGCCTGGTGCGCAATAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGSCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACATTTTACAAGAGAGAAATGAATGAATGATATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTTTCACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATGTCAACCTTGTTCTTATTCTCCAGCTCCATCTTCTTCTTGGCGGCTCTGAGATAAATCGAATTTTGAAAATCTGGATGTCTAGGAATATAGGAATCTAGGAATCTAGAAATCTAGGAATCTAGGAATCTAGGAAGTCAGGAACCCAGGGATCCAGGAATCCAAAAGTCCATAAATTCAAAAATACAGAAATCTCGGAATACAGGAATCTGTGAATCCAGGAATCCAGGAATTCAGGAATCCAGAAATTTAGGAATCCAGGAATCTAGGAATCCAAACACTCCGAAGTATTTTTTTTTAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 314 73 49 33 12 8 6 4</canonical_bands>
                <polymorphic_bands>550 314 73 33 12 8 6 4</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>258 196 142 67 53 49 43 41 20 19 18 16 15 15 14 12 8 6 4 4</canonical_bands>
                <polymorphic_bands>258 196 142 67 63 53 43 41 20 19 18 16 15 15 12 8 6 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATGGTACCCAGTCTTGTGA</pcr_primer_p1>
		<pcr_primer_p2>TGTGATAACTTTTGAACTTTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>438</pcr_amplicon_size>
		<canonical_amplicon>TAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACA</canonical_amplicon>
		<polymorphic_amplicon>TAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGSCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35785</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>136491</contig_pos>
        <strand></strand>
        <context>ccaaattcga[A/C]agccttGCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGA</left_flank>
        <right_flank>AGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGTATAGTCGGGAAAGTAAAGAAATCAGGCTAATTATGACCCTGGAGAGATTCTTATAACGCAAATCAGGCTGAGGTTGGTCAGGCTGGCAGAGGAGAGGCGAGCCTGGTGCGCAATAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACATTTTACAAGAGAGAAATGAATGAATGATATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTTTCACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATGTCAACCTTGTTCTTATTCTCCAGCTCCATCTTCTTCTTGGCGGCTCTGAGATAAATCGAATTTTGAAAATCTGGATGTCTAGGAATATAGGAATCTAGGAATCTAGAAATCTAGGAATCTAGGAATCTAGGAAGTCAGGAACCCAGGGATCCAGGAATCCAAAAGTCCATAAATTCAAAAATACAGAAATCTCGGAATACAGGAATCTGTGAATCCAGGAATCCAGGAATTCAGGAATCCAGAAATTTAGGAATCCAGGAATCTAGGAATCCAAACACTCCGAAGTATTTTTTTTTAATTTTTGGACTCGAG</canonical>
            <polymorphic>TTTCGTATAGTCGGGAAAGTAAAGAAATCAGGCTAATTATGACCCTGGAGAGATTCTTATAACGCAAATCAGGCTGAGGTTGGTCAGGCTGGCAGAGGAGAGGCGAGCCTGGTGCGCAATAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAMAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACATTTTACAAGAGAGAAATGAATGAATGATATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTTTCACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATGTCAACCTTGTTCTTATTCTCCAGCTCCATCTTCTTCTTGGCGGCTCTGAGATAAATCGAATTTTGAAAATCTGGATGTCTAGGAATATAGGAATCTAGGAATCTAGAAATCTAGGAATCTAGGAATCTAGGAAGTCAGGAACCCAGGGATCCAGGAATCCAAAAGTCCATAAATTCAAAAATACAGAAATCTCGGAATACAGGAATCTGTGAATCCAGGAATCCAGGAATTCAGGAATCCAGAAATTTAGGAATCCAGGAATCTAGGAATCCAAACACTCCGAAGTATTTTTTTTTAATTTTTGGACTCGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>504 397 99</canonical_bands>
                <polymorphic_bands>603 397</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATGGTACCCAGTCTTGTGA</pcr_primer_p1>
		<pcr_primer_p2>TGTGATAACTTTTGAACTTTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>438</pcr_amplicon_size>
		<canonical_amplicon>TAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACA</canonical_amplicon>
		<polymorphic_amplicon>TAATGGTACCCAGTCTTGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAMAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35786</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>136626</contig_pos>
        <strand>+</strand>
        <context>AGATTATTTT[C/T]CACCGAAAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTT</left_flank>
        <right_flank>CACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACATTTTACAAGAGAGAAATGAATGAATGATATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTTTCACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATGTCAACCTTGTTCTTATTCTCCAGCTCCATCTTCTTCTTGGCGGCTCTGAGATAAATCGAATTTTGAAAATCTGGATGTCTAGGAATATAGGAATCTAGGAATCTAGAAATCTAGGAATCTAGGAATCTAGGAAGTCAGGAACCCAGGGATCCAGGAATCCAAAAGTCCATAAATTCAAAAATACAGAAATCTCGGAATACAGGAATCTGTGAATCCAGGAATCCAGGAATTCAGGAATCCAGAAATTTAGGAATCCAGGAATCTAGGAATCCAAACACTCCGAAGTATTTTTTTTTAATTTTTGGACTCGAGAATATGGGAAATTTGAAATATTGGACTTTCGGATTTTCGGAATATCGAAATATCGAAATAATCTTGAAAAAACTCACTTGGCCATTCCGATGAGCATAAAAATATTCTGGGTGAGCTCCTCAGCTTCCGGCTCTC</canonical>
            <polymorphic>TGTGACGCAATTGACCTTTTGAACTAAATTATCTCCATTTCTATATGAGATATCAAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACATTTTACAAGAGAGAAATGAATGAATGATATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTTYCACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATGTCAACCTTGTTCTTATTCTCCAGCTCCATCTTCTTCTTGGCGGCTCTGAGATAAATCGAATTTTGAAAATCTGGATGTCTAGGAATATAGGAATCTAGGAATCTAGAAATCTAGGAATCTAGGAATCTAGGAAGTCAGGAACCCAGGGATCCAGGAATCCAAAAGTCCATAAATTCAAAAATACAGAAATCTCGGAATACAGGAATCTGTGAATCCAGGAATCCAGGAATTCAGGAATCCAGAAATTTAGGAATCCAGGAATCTAGGAATCCAAACACTCCGAAGTATTTTTTTTTAATTTTTGGACTCGAGAATATGGGAAATTTGAAATATTGGACTTTCGGATTTTCGGAATATCGAAATATCGAAATAATCTTGAAAAAACTCACTTGGCCATTCCGATGAGCATAAAAATATTCTGGGTGAGCTCCTCAGCTTCCGGCTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCAAAGTTCAAAAGTTATCACA</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAAATTCGATTTATCTCAG</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>GTTCAAAGTTCAAAAGTTATCACATTTTACAAGAGAGAAATGAATGAATGATATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTTTCACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATGTCAACCTTGTTCTTATTCTCCAGCTCCATCTTCTTCTTGGCGGCTCTGAGATAAATCGAATTTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>GTTCAAAGTTCAAAAGTTATCACATTTTACAAGAGAGAAATGAATGAATGATATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTTYCACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATGTCAACCTTGTTCTTATTCTCCAGCTCCATCTTCTTCTTGGCGGCTCTGAGATAAATCGAATTTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35787</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>136680</contig_pos>
        <strand>+</strand>
        <context>GACGTCGATG[C/T]CAACCTTGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATG</left_flank>
        <right_flank>CAACCTTGTTCTTATTCTCCAGCTCCATCTTCTTCTTGGCGGCTCTGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACATTTTACAAGAGAGAAATGAATGAATGATATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTTTCACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATGTCAACCTTGTTCTTATTCTCCAGCTCCATCTTCTTCTTGGCGGCTCTGAGATAAATCGAATTTTGAAAATCTGGATGTCTAGGAATATAGGAATCTAGGAATCTAGAAATCTAGGAATCTAGGAATCTAGGAAGTCAGGAACCCAGGGATCCAGGAATCCAAAAGTCCATAAATTCAAAAATACAGAAATCTCGGAATACAGGAATCTGTGAATCCAGGAATCCAGGAATTCAGGAATCCAGAAATTTAGGAATCCAGGAATCTAGGAATCCAAACACTCCGAAGTATTTTTTTTTAATTTTTGGACTCGAGAATATGGGAAATTTGAAATATTGGACTTTCGGATTTTCGGAATATCGAAATATCGAAATAATCTTGAAAAAACTCACTTGGCCATTCCGATGAGCATAAAAATATTCTGGGTGAGCTCCTCAGCTTCCGGCTCTCTTGCTCTCAAATCCGCAAAGATTTTATTGATTTCTTTGACGTAGGCCTGGGAGT</canonical>
            <polymorphic>AAAAAAGGGTAGACTGATAAAATATTCATCATAATGGCAGCAGCATTTTGTCAGTTGACCATTTTTTGATATATCTTACAGTAATCGAGATACATTTTGTCAAAGTTGATAAGGCCTTCCTTTGAGGCAAGGCTGTCAAAAACAGGGCCGCGGCCGGCCGTGATTGAGGCCGTCGGTGTGTTACCATGGATCAATCAGTCCGTTCTTTCGAAATACGCTCAGCCAGCCAAAAACTATCAGGGCCGCTAGGCCGCCGAATCCTACCTATTTCAGAAGTACCTGAACTAAAAATGCCTCGGCCCAAATTCGAAAGCCTTGCTTTGAGGTATTTCTTCAAAACTATAGTTCAAAGTTCAAAAGTTATCACATTTTACAAGAGAGAAATGAATGAATGATATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTTTCACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATGYCAACCTTGTTCTTATTCTCCAGCTCCATCTTCTTCTTGGCGGCTCTGAGATAAATCGAATTTTGAAAATCTGGATGTCTAGGAATATAGGAATCTAGGAATCTAGAAATCTAGGAATCTAGGAATCTAGGAAGTCAGGAACCCAGGGATCCAGGAATCCAAAAGTCCATAAATTCAAAAATACAGAAATCTCGGAATACAGGAATCTGTGAATCCAGGAATCCAGGAATTCAGGAATCCAGAAATTTAGGAATCCAGGAATCTAGGAATCCAAACACTCCGAAGTATTTTTTTTTAATTTTTGGACTCGAGAATATGGGAAATTTGAAATATTGGACTTTCGGATTTTCGGAATATCGAAATATCGAAATAATCTTGAAAAAACTCACTTGGCCATTCCGATGAGCATAAAAATATTCTGGGTGAGCTCCTCAGCTTCCGGCTCTCTTGCTCTCAAATCCGCAAAGATTTTATTGATTTCTTTGACGTAGGCCTGGGAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNNNNGTC</site>
                <isoschizomers>
                    <enzyme>AasI</enzyme>
                    <enzyme>DrdI</enzyme>
                    <enzyme>DseDI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>499 445 56</canonical_bands>
                <polymorphic_bands>944 56</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 445 45 11</canonical_bands>
                <polymorphic_bands>944 45 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCAAAGTTCAAAAGTTATCACA</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAAATTCGATTTATCTCAG</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>GTTCAAAGTTCAAAAGTTATCACATTTTACAAGAGAGAAATGAATGAATGATATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTTTCACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATGTCAACCTTGTTCTTATTCTCCAGCTCCATCTTCTTCTTGGCGGCTCTGAGATAAATCGAATTTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>GTTCAAAGTTCAAAAGTTATCACATTTTACAAGAGAGAAATGAATGAATGATATTGCATTATGAGACAGGAAAAAGCATATAAAAATTACAAGATTATTTTTCACCGAAAGCTTTGATCTGAAGCGATCCGATGGCGTCCATGACGACGTCGATGYCAACCTTGTTCTTATTCTCCAGCTCCATCTTCTTCTTGGCGGCTCTGAGATAAATCGAATTTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35788</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>204346</contig_pos>
        <strand>+</strand>
        <context>CCTCCAGCCA[C/T]CAAGGTTCCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTCAAATATATACGGAACGGAACAATTTTGTTTTTGACCCTCCAGCCA</left_flank>
        <right_flank>CAAGGTTCCCCTGTCCCCCTCTTAAAAATTCCTATAAGTATTCAAATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAATTTCTGAGTTTCTGAATCTCGCAATAAAATCAAAACATCCTCAGTTATTCAAAAAATTTAACCTGAAGCGAAAAATTTAAAAAAAAAAATCTGATTCTCACATTTTTCTTCTTTTGCCTCCTGCTCCTGGCTCGAGCATTCCCACAGGACTGATGAGAAAAAACCTTTTCTCCGTCCCGTGTTGAAGCCTGCTCATCGGCTTTTCTTTTTTTCTACGCCTTCGTGAGCAGAATAATTCATTATACTAATGCTGGGTGCTCCCCTTCCCGCCCCGTCCGTCCCCATCACACGAATGGGACCTTCCTTTATTCTGTCTCTATCTTTAAGTCTCCAATATCTTCTTTCCATTCCCTTCCCATCCCCAGATATCATCATGTTTCAAAGCACACACACACACAAATTTCTGTGTTCTTCTAACTTTTCCTTTTTCCTCTCCCCTTGTGCCATTTCAAATATATACGGAACGGAACAATTTTGTTTTTGACCCTCCAGCCATCAAGGTTCCCCTGTCCCCCTCTTAAAAATTCCTATAAGTATTCAAATTTTTTGGAGCTCCCTCCCTCCCTCCATTCCCTTTTTGCTCCATTTTTCAATTTCTAATATGTTTTCGAATAAGGCTCCTTTCTGCTGCCAGACACAGCAGCCAGCAGGACCTTATTTTTCATTTTTTATGAAAAAAAAACCGGAAGAAAAAAAAAAACGAAAACGAACAAAATAGGGAGGGGGAGCTCCTGGGCGCTCCTTGGAGCAGCGTTTTTTTGCGGCTCAATTGGTTCCAAGATTTTTTTTTGGAAGGTCCCTTGGAATTCTATTAGTGAAGACCCTAAAACCTGTAATAAAAGGGCCCTCTAACTTTGTGACCATTTTTCGCATTTTTCGCGCATCGACCGACTTGAGTTAATTTATCTCGTCTTCTGTAAAAGATATCAAAAAGTAATCAACTAACAAAATATTTATCATAAGATTAGTAATATTTTATCAATTGACCACTTTTTA</canonical>
            <polymorphic>TGAATTTCTGAGTTTCTGAATCTCGCAATAAAATCAAAACATCCTCAGTTATTCAAAAAATTTAACCTGAAGCGAAAAATTTAAAAAAAAAAATCTGATTCTCACATTTTTCTTCTTTTGCCTCCTGCTCCTGGCTCGAGCATTCCCACAGGACTGATGAGAAAAAACCTTTTCTCCGTCCCGTGTTGAAGCCTGCTCATCGGCTTTTCTTTTTTTCTACGCCTTCGTGAGCAGAATAATTCATTATACTAATGCTGGGTGCTCCCCTTCCCGCCCCGTCCGTCCCCATCACACGAATGGGACCTTCCTTTATTCTGTCTCTATCTTTAAGTCTCCAATATCTTCTTTCCATTCCCTTCCCATCCCCAGATATCATCATGTTTCAAAGCACACACACACACAAATTTCTGTGTTCTTCTAACTTTTCCTTTTTCCTCTCCCCTTGTGCCATTTCAAATATATACGGAACGGAACAATTTTGTTTTTGACCCTCCAGCCAYCAAGGTTCCCCTGTCCCCCTCTTAAAAATTCCTATAAGTATTCAAATTTTTTGGAGCTCCCTCCCTCCCTCCATTCCCTTTTTGCTCCATTTTTCAATTTCTAATATGTTTTCGAATAAGGCTCCTTTCTGCTGCCAGACACAGCAGCCAGCAGGACCTTATTTTTCATTTTTTATGAAAAAAAAACCGGAAGAAAAAAAAAAACGAAAACGAACAAAATAGGGAGGGGGAGCTCCTGGGCGCTCCTTGGAGCAGCGTTTTTTTGCGGCTCAATTGGTTCCAAGATTTTTTTTTGGAAGGTCCCTTGGAATTCTATTAGTGAAGACCCTAAAACCTGTAATAAAAGGGCCCTCTAACTTTGTGACCATTTTTCGCATTTTTCGCGCATCGACCGACTTGAGTTAATTTATCTCGTCTTCTGTAAAAGATATCAAAAAGTAATCAACTAACAAAATATTTATCATAAGATTAGTAATATTTTATCAATTGACCACTTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATGTTTCAAAGCACACAC</pcr_primer_p1>
		<pcr_primer_p2>GAGCCTTATTCGAAAACATATTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCATGTTTCAAAGCACACACACACACAAATTTCTGTGTTCTTCTAACTTTTCCTTTTTCCTCTCCCCTTGTGCCATTTCAAATATATACGGAACGGAACAATTTTGTTTTTGACCCTCCAGCCATCAAGGTTCCCCTGTCCCCCTCTTAAAAATTCCTATAAGTATTCAAATTTTTTGGAGCTCCCTCCCTCCCTCCATTCCCTTTTTGCTCCATTTTTCAATTTCTAATATGTTTTCGAATAAGGCTC</canonical_amplicon>
		<polymorphic_amplicon>TCATGTTTCAAAGCACACACACACACAAATTTCTGTGTTCTTCTAACTTTTCCTTTTTCCTCTCCCCTTGTGCCATTTCAAATATATACGGAACGGAACAATTTTGTTTTTGACCCTCCAGCCAYCAAGGTTCCCCTGTCCCCCTCTTAAAAATTCCTATAAGTATTCAAATTTTTTGGAGCTCCCTCCCTCCCTCCATTCCCTTTTTGCTCCATTTTTCAATTTCTAATATGTTTTCGAATAAGGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35789</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>204442</contig_pos>
        <strand>+</strand>
        <context>TCCATTTTTC[A/G]ATTTCTAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTTTGGAGCTCCCTCCCTCCCTCCATTCCCTTTTTGCTCCATTTTTC</left_flank>
        <right_flank>ATTTCTAATATGTTTTCGAATAAGGCTCCTTTCTGCTGCCAGACACAGCA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTCTCACATTTTTCTTCTTTTGCCTCCTGCTCCTGGCTCGAGCATTCCCACAGGACTGATGAGAAAAAACCTTTTCTCCGTCCCGTGTTGAAGCCTGCTCATCGGCTTTTCTTTTTTTCTACGCCTTCGTGAGCAGAATAATTCATTATACTAATGCTGGGTGCTCCCCTTCCCGCCCCGTCCGTCCCCATCACACGAATGGGACCTTCCTTTATTCTGTCTCTATCTTTAAGTCTCCAATATCTTCTTTCCATTCCCTTCCCATCCCCAGATATCATCATGTTTCAAAGCACACACACACACAAATTTCTGTGTTCTTCTAACTTTTCCTTTTTCCTCTCCCCTTGTGCCATTTCAAATATATACGGAACGGAACAATTTTGTTTTTGACCCTCCAGCCATCAAGGTTCCCCTGTCCCCCTCTTAAAAATTCCTATAAGTATTCAAATTTTTTGGAGCTCCCTCCCTCCCTCCATTCCCTTTTTGCTCCATTTTTCAATTTCTAATATGTTTTCGAATAAGGCTCCTTTCTGCTGCCAGACACAGCAGCCAGCAGGACCTTATTTTTCATTTTTTATGAAAAAAAAACCGGAAGAAAAAAAAAAACGAAAACGAACAAAATAGGGAGGGGGAGCTCCTGGGCGCTCCTTGGAGCAGCGTTTTTTTGCGGCTCAATTGGTTCCAAGATTTTTTTTTGGAAGGTCCCTTGGAATTCTATTAGTGAAGACCCTAAAACCTGTAATAAAAGGGCCCTCTAACTTTGTGACCATTTTTCGCATTTTTCGCGCATCGACCGACTTGAGTTAATTTATCTCGTCTTCTGTAAAAGATATCAAAAAGTAATCAACTAACAAAATATTTATCATAAGATTAGTAATATTTTATCAATTGACCACTTTTTAATATCTCAGTGAAAAACAGTGAAAAACCAGAATTAAAGAAAAGTGCGCTCCACGGATAACTTGAGATGGCGCCCTGCCGAGCGTCTTTGGCTCATT</canonical>
            <polymorphic>GATTCTCACATTTTTCTTCTTTTGCCTCCTGCTCCTGGCTCGAGCATTCCCACAGGACTGATGAGAAAAAACCTTTTCTCCGTCCCGTGTTGAAGCCTGCTCATCGGCTTTTCTTTTTTTCTACGCCTTCGTGAGCAGAATAATTCATTATACTAATGCTGGGTGCTCCCCTTCCCGCCCCGTCCGTCCCCATCACACGAATGGGACCTTCCTTTATTCTGTCTCTATCTTTAAGTCTCCAATATCTTCTTTCCATTCCCTTCCCATCCCCAGATATCATCATGTTTCAAAGCACACACACACACAAATTTCTGTGTTCTTCTAACTTTTCCTTTTTCCTCTCCCCTTGTGCCATTTCAAATATATACGGAACGGAACAATTTTGTTTTTGACCCTCCAGCCATCAAGGTTCCCCTGTCCCCCTCTTAAAAATTCCTATAAGTATTCAAATTTTTTGGAGCTCCCTCCCTCCCTCCATTCCCTTTTTGCTCCATTTTTCRATTTCTAATATGTTTTCGAATAAGGCTCCTTTCTGCTGCCAGACACAGCAGCCAGCAGGACCTTATTTTTCATTTTTTATGAAAAAAAAACCGGAAGAAAAAAAAAAACGAAAACGAACAAAATAGGGAGGGGGAGCTCCTGGGCGCTCCTTGGAGCAGCGTTTTTTTGCGGCTCAATTGGTTCCAAGATTTTTTTTTGGAAGGTCCCTTGGAATTCTATTAGTGAAGACCCTAAAACCTGTAATAAAAGGGCCCTCTAACTTTGTGACCATTTTTCGCATTTTTCGCGCATCGACCGACTTGAGTTAATTTATCTCGTCTTCTGTAAAAGATATCAAAAAGTAATCAACTAACAAAATATTTATCATAAGATTAGTAATATTTTATCAATTGACCACTTTTTAATATCTCAGTGAAAAACAGTGAAAAACCAGAATTAAAGAAAAGTGCGCTCCACGGATAACTTGAGATGGCGCCCTGCCGAGCGTCTTTGGCTCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>176 165 141 95 81 72 66 52 51 46 37 18</canonical_bands>
                <polymorphic_bands>227 165 141 95 81 72 66 52 46 37 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAACAATTTTGTTTTTGACC</pcr_primer_p1>
		<pcr_primer_p2>TATTTTGTTCGTTTTCGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGAACAATTTTGTTTTTGACCCTCCAGCCATCAAGGTTCCCCTGTCCCCCTCTTAAAAATTCCTATAAGTATTCAAATTTTTTGGAGCTCCCTCCCTCCCTCCATTCCCTTTTTGCTCCATTTTTCAATTTCTAATATGTTTTCGAATAAGGCTCCTTTCTGCTGCCAGACACAGCAGCCAGCAGGACCTTATTTTTCATTTTTTATGAAAAAAAAACCGGAAGAAAAAAAAAAACGAAAACGAACAAAATA</canonical_amplicon>
		<polymorphic_amplicon>GGAACAATTTTGTTTTTGACCCTCCAGCCATCAAGGTTCCCCTGTCCCCCTCTTAAAAATTCCTATAAGTATTCAAATTTTTTGGAGCTCCCTCCCTCCCTCCATTCCCTTTTTGCTCCATTTTTCRATTTCTAATATGTTTTCGAATAAGGCTCCTTTCTGCTGCCAGACACAGCAGCCAGCAGGACCTTATTTTTCATTTTTTATGAAAAAAAAACCGGAAGAAAAAAAAAAACGAAAACGAACAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35790</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>204714</contig_pos>
        <strand>+</strand>
        <context>tttGTGACCA[A/T]TTTTCGCATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTGAAGACCCTAAAACCTGTAATAAAAGGGCCCTCTAACTTTGTGACCA</left_flank>
        <right_flank>TTTTCGCATTTTTCGCGCATCGACCGACTTGAGTTAATTTATCTCGTCTT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATATCATCATGTTTCAAAGCACACACACACACAAATTTCTGTGTTCTTCTAACTTTTCCTTTTTCCTCTCCCCTTGTGCCATTTCAAATATATACGGAACGGAACAATTTTGTTTTTGACCCTCCAGCCATCAAGGTTCCCCTGTCCCCCTCTTAAAAATTCCTATAAGTATTCAAATTTTTTGGAGCTCCCTCCCTCCCTCCATTCCCTTTTTGCTCCATTTTTCAATTTCTAATATGTTTTCGAATAAGGCTCCTTTCTGCTGCCAGACACAGCAGCCAGCAGGACCTTATTTTTCATTTTTTATGAAAAAAAAACCGGAAGAAAAAAAAAAACGAAAACGAACAAAATAGGGAGGGGGAGCTCCTGGGCGCTCCTTGGAGCAGCGTTTTTTTGCGGCTCAATTGGTTCCAAGATTTTTTTTTGGAAGGTCCCTTGGAATTCTATTAGTGAAGACCCTAAAACCTGTAATAAAAGGGCCCTCTAACTTTGTGACCATTTTTCGCATTTTTCGCGCATCGACCGACTTGAGTTAATTTATCTCGTCTTCTGTAAAAGATATCAAAAAGTAATCAACTAACAAAATATTTATCATAAGATTAGTAATATTTTATCAATTGACCACTTTTTAATATCTCAGTGAAAAACAGTGAAAAACCAGAATTAAAGAAAAGTGCGCTCCACGGATAACTTGAGATGGCGCCCTGCCGAGCGTCTTTGGCTCATTTCATCTTGGTTCTAGTAAGAGACGTCAAAAAGTAATCAACTAACAAAGTATTTATCATAAAATCAGTAATATTTTATCAGTAGACCTCTTTTTGATACCTTCTACAGGAACCGAGATAAAATTGGTCAAAGTTGACCAAAAAAAAATTTTTTTTTGATTTTCTGTAGTTTGAACTGTGTTCGGAATTTTTACGAAAGATTCAAAAATTGGTCGAAAACTACCAAGTCAAAGACCCAAATCCTATATTTGCCAAAAATTAGTTTTTGCAATAA</canonical>
            <polymorphic>GATATCATCATGTTTCAAAGCACACACACACACAAATTTCTGTGTTCTTCTAACTTTTCCTTTTTCCTCTCCCCTTGTGCCATTTCAAATATATACGGAACGGAACAATTTTGTTTTTGACCCTCCAGCCATCAAGGTTCCCCTGTCCCCCTCTTAAAAATTCCTATAAGTATTCAAATTTTTTGGAGCTCCCTCCCTCCCTCCATTCCCTTTTTGCTCCATTTTTCAATTTCTAATATGTTTTCGAATAAGGCTCCTTTCTGCTGCCAGACACAGCAGCCAGCAGGACCTTATTTTTCATTTTTTATGAAAAAAAAACCGGAAGAAAAAAAAAAACGAAAACGAACAAAATAGGGAGGGGGAGCTCCTGGGCGCTCCTTGGAGCAGCGTTTTTTTGCGGCTCAATTGGTTCCAAGATTTTTTTTTGGAAGGTCCCTTGGAATTCTATTAGTGAAGACCCTAAAACCTGTAATAAAAGGGCCCTCTAACTTTGTGACCAWTTTTCGCATTTTTCGCGCATCGACCGACTTGAGTTAATTTATCTCGTCTTCTGTAAAAGATATCAAAAAGTAATCAACTAACAAAATATTTATCATAAGATTAGTAATATTTTATCAATTGACCACTTTTTAATATCTCAGTGAAAAACAGTGAAAAACCAGAATTAAAGAAAAGTGCGCTCCACGGATAACTTGAGATGGCGCCCTGCCGAGCGTCTTTGGCTCATTTCATCTTGGTTCTAGTAAGAGACGTCAAAAAGTAATCAACTAACAAAGTATTTATCATAAAATCAGTAATATTTTATCAGTAGACCTCTTTTTGATACCTTCTACAGGAACCGAGATAAAATTGGTCAAAGTTGACCAAAAAAAAATTTTTTTTTGATTTTCTGTAGTTTGAACTGTGTTCGGAATTTTTACGAAAGATTCAAAAATTGGTCGAAAACTACCAAGTCAAAGACCCAAATCCTATATTTGCCAAAAATTAGTTTTTGCAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCCCTTGGAATTCTATTAGT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTTTAATTCTGGTTTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GGTCCCTTGGAATTCTATTAGTGAAGACCCTAAAACCTGTAATAAAAGGGCCCTCTAACTTTGTGACCATTTTTCGCATTTTTCGCGCATCGACCGACTTGAGTTAATTTATCTCGTCTTCTGTAAAAGATATCAAAAAGTAATCAACTAACAAAATATTTATCATAAGATTAGTAATATTTTATCAATTGACCACTTTTTAATATCTCAGTGAAAAACAGTGAAAAACCAGAATTAAAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTCCCTTGGAATTCTATTAGTGAAGACCCTAAAACCTGTAATAAAAGGGCCCTCTAACTTTGTGACCAWTTTTCGCATTTTTCGCGCATCGACCGACTTGAGTTAATTTATCTCGTCTTCTGTAAAAGATATCAAAAAGTAATCAACTAACAAAATATTTATCATAAGATTAGTAATATTTTATCAATTGACCACTTTTTAATATCTCAGTGAAAAACAGTGAAAAACCAGAATTAAAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35791</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>204739</contig_pos>
        <strand>+</strand>
        <context>GCGCATCGAC[A/C]GACttgagtt</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAGGGCCCTCTAACTTTGTGACCATTTTTCGCATTTTTCGCGCATCGAC</left_flank>
        <right_flank>GACTTGAGTTAATTTATCTCGTCTTCTGTAAAAGATATCAAAAAGTAATC</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACACACAAATTTCTGTGTTCTTCTAACTTTTCCTTTTTCCTCTCCCCTTGTGCCATTTCAAATATATACGGAACGGAACAATTTTGTTTTTGACCCTCCAGCCATCAAGGTTCCCCTGTCCCCCTCTTAAAAATTCCTATAAGTATTCAAATTTTTTGGAGCTCCCTCCCTCCCTCCATTCCCTTTTTGCTCCATTTTTCAATTTCTAATATGTTTTCGAATAAGGCTCCTTTCTGCTGCCAGACACAGCAGCCAGCAGGACCTTATTTTTCATTTTTTATGAAAAAAAAACCGGAAGAAAAAAAAAAACGAAAACGAACAAAATAGGGAGGGGGAGCTCCTGGGCGCTCCTTGGAGCAGCGTTTTTTTGCGGCTCAATTGGTTCCAAGATTTTTTTTTGGAAGGTCCCTTGGAATTCTATTAGTGAAGACCCTAAAACCTGTAATAAAAGGGCCCTCTAACTTTGTGACCATTTTTCGCATTTTTCGCGCATCGACCGACTTGAGTTAATTTATCTCGTCTTCTGTAAAAGATATCAAAAAGTAATCAACTAACAAAATATTTATCATAAGATTAGTAATATTTTATCAATTGACCACTTTTTAATATCTCAGTGAAAAACAGTGAAAAACCAGAATTAAAGAAAAGTGCGCTCCACGGATAACTTGAGATGGCGCCCTGCCGAGCGTCTTTGGCTCATTTCATCTTGGTTCTAGTAAGAGACGTCAAAAAGTAATCAACTAACAAAGTATTTATCATAAAATCAGTAATATTTTATCAGTAGACCTCTTTTTGATACCTTCTACAGGAACCGAGATAAAATTGGTCAAAGTTGACCAAAAAAAAATTTTTTTTTGATTTTCTGTAGTTTGAACTGTGTTCGGAATTTTTACGAAAGATTCAAAAATTGGTCGAAAACTACCAAGTCAAAGACCCAAATCCTATATTTGCCAAAAATTAGTTTTTGCAATAACAAGAAGTTTGATTTCTATGAATTT</canonical>
            <polymorphic>ACACACACAAATTTCTGTGTTCTTCTAACTTTTCCTTTTTCCTCTCCCCTTGTGCCATTTCAAATATATACGGAACGGAACAATTTTGTTTTTGACCCTCCAGCCATCAAGGTTCCCCTGTCCCCCTCTTAAAAATTCCTATAAGTATTCAAATTTTTTGGAGCTCCCTCCCTCCCTCCATTCCCTTTTTGCTCCATTTTTCAATTTCTAATATGTTTTCGAATAAGGCTCCTTTCTGCTGCCAGACACAGCAGCCAGCAGGACCTTATTTTTCATTTTTTATGAAAAAAAAACCGGAAGAAAAAAAAAAACGAAAACGAACAAAATAGGGAGGGGGAGCTCCTGGGCGCTCCTTGGAGCAGCGTTTTTTTGCGGCTCAATTGGTTCCAAGATTTTTTTTTGGAAGGTCCCTTGGAATTCTATTAGTGAAGACCCTAAAACCTGTAATAAAAGGGCCCTCTAACTTTGTGACCATTTTTCGCATTTTTCGCGCATCGACMGACTTGAGTTAATTTATCTCGTCTTCTGTAAAAGATATCAAAAAGTAATCAACTAACAAAATATTTATCATAAGATTAGTAATATTTTATCAATTGACCACTTTTTAATATCTCAGTGAAAAACAGTGAAAAACCAGAATTAAAGAAAAGTGCGCTCCACGGATAACTTGAGATGGCGCCCTGCCGAGCGTCTTTGGCTCATTTCATCTTGGTTCTAGTAAGAGACGTCAAAAAGTAATCAACTAACAAAGTATTTATCATAAAATCAGTAATATTTTATCAGTAGACCTCTTTTTGATACCTTCTACAGGAACCGAGATAAAATTGGTCAAAGTTGACCAAAAAAAAATTTTTTTTTGATTTTCTGTAGTTTGAACTGTGTTCGGAATTTTTACGAAAGATTCAAAAATTGGTCGAAAACTACCAAGTCAAAGACCCAAATCCTATATTTGCCAAAAATTAGTTTTTGCAATAACAAGAAGTTTGATTTCTATGAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTCCCTTGGAATTCTATTAGT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTTTAATTCTGGTTTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GGTCCCTTGGAATTCTATTAGTGAAGACCCTAAAACCTGTAATAAAAGGGCCCTCTAACTTTGTGACCATTTTTCGCATTTTTCGCGCATCGACCGACTTGAGTTAATTTATCTCGTCTTCTGTAAAAGATATCAAAAAGTAATCAACTAACAAAATATTTATCATAAGATTAGTAATATTTTATCAATTGACCACTTTTTAATATCTCAGTGAAAAACAGTGAAAAACCAGAATTAAAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTCCCTTGGAATTCTATTAGTGAAGACCCTAAAACCTGTAATAAAAGGGCCCTCTAACTTTGTGACCATTTTTCGCATTTTTCGCGCATCGACMGACTTGAGTTAATTTATCTCGTCTTCTGTAAAAGATATCAAAAAGTAATCAACTAACAAAATATTTATCATAAGATTAGTAATATTTTATCAATTGACCACTTTTTAATATCTCAGTGAAAAACAGTGAAAAACCAGAATTAAAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35792</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>204754</contig_pos>
        <strand></strand>
        <context>tgagttaatt[T/C]atctcgtytt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTGTGACCATTTTTCGCATTTTTCGCGCATCGACCGACTTGAGTTAATT</left_flank>
        <right_flank>ATCTCGTCTTCTGTAAAAGATATCAAAAAGTAATCAACTAACAAAATATT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGTTCTTCTAACTTTTCCTTTTTCCTCTCCCCTTGTGCCATTTCAAATATATACGGAACGGAACAATTTTGTTTTTGACCCTCCAGCCATCAAGGTTCCCCTGTCCCCCTCTTAAAAATTCCTATAAGTATTCAAATTTTTTGGAGCTCCCTCCCTCCCTCCATTCCCTTTTTGCTCCATTTTTCAATTTCTAATATGTTTTCGAATAAGGCTCCTTTCTGCTGCCAGACACAGCAGCCAGCAGGACCTTATTTTTCATTTTTTATGAAAAAAAAACCGGAAGAAAAAAAAAAACGAAAACGAACAAAATAGGGAGGGGGAGCTCCTGGGCGCTCCTTGGAGCAGCGTTTTTTTGCGGCTCAATTGGTTCCAAGATTTTTTTTTGGAAGGTCCCTTGGAATTCTATTAGTGAAGACCCTAAAACCTGTAATAAAAGGGCCCTCTAACTTTGTGACCATTTTTCGCATTTTTCGCGCATCGACCGACTTGAGTTAATTTATCTCGTCTTCTGTAAAAGATATCAAAAAGTAATCAACTAACAAAATATTTATCATAAGATTAGTAATATTTTATCAATTGACCACTTTTTAATATCTCAGTGAAAAACAGTGAAAAACCAGAATTAAAGAAAAGTGCGCTCCACGGATAACTTGAGATGGCGCCCTGCCGAGCGTCTTTGGCTCATTTCATCTTGGTTCTAGTAAGAGACGTCAAAAAGTAATCAACTAACAAAGTATTTATCATAAAATCAGTAATATTTTATCAGTAGACCTCTTTTTGATACCTTCTACAGGAACCGAGATAAAATTGGTCAAAGTTGACCAAAAAAAAATTTTTTTTTGATTTTCTGTAGTTTGAACTGTGTTCGGAATTTTTACGAAAGATTCAAAAATTGGTCGAAAACTACCAAGTCAAAGACCCAAATCCTATATTTGCCAAAAATTAGTTTTTGCAATAACAAGAAGTTTGATTTCTATGAATTTCAAAGTAGGAGAGAC</canonical>
            <polymorphic>TGTGTTCTTCTAACTTTTCCTTTTTCCTCTCCCCTTGTGCCATTTCAAATATATACGGAACGGAACAATTTTGTTTTTGACCCTCCAGCCATCAAGGTTCCCCTGTCCCCCTCTTAAAAATTCCTATAAGTATTCAAATTTTTTGGAGCTCCCTCCCTCCCTCCATTCCCTTTTTGCTCCATTTTTCAATTTCTAATATGTTTTCGAATAAGGCTCCTTTCTGCTGCCAGACACAGCAGCCAGCAGGACCTTATTTTTCATTTTTTATGAAAAAAAAACCGGAAGAAAAAAAAAAACGAAAACGAACAAAATAGGGAGGGGGAGCTCCTGGGCGCTCCTTGGAGCAGCGTTTTTTTGCGGCTCAATTGGTTCCAAGATTTTTTTTTGGAAGGTCCCTTGGAATTCTATTAGTGAAGACCCTAAAACCTGTAATAAAAGGGCCCTCTAACTTTGTGACCATTTTTCGCATTTTTCGCGCATCGACCGACTTGAGTTAATTYATCTCGTCTTCTGTAAAAGATATCAAAAAGTAATCAACTAACAAAATATTTATCATAAGATTAGTAATATTTTATCAATTGACCACTTTTTAATATCTCAGTGAAAAACAGTGAAAAACCAGAATTAAAGAAAAGTGCGCTCCACGGATAACTTGAGATGGCGCCCTGCCGAGCGTCTTTGGCTCATTTCATCTTGGTTCTAGTAAGAGACGTCAAAAAGTAATCAACTAACAAAGTATTTATCATAAAATCAGTAATATTTTATCAGTAGACCTCTTTTTGATACCTTCTACAGGAACCGAGATAAAATTGGTCAAAGTTGACCAAAAAAAAATTTTTTTTTGATTTTCTGTAGTTTGAACTGTGTTCGGAATTTTTACGAAAGATTCAAAAATTGGTCGAAAACTACCAAGTCAAAGACCCAAATCCTATATTTGCCAAAAATTAGTTTTTGCAATAACAAGAAGTTTGATTTCTATGAATTTCAAAGTAGGAGAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCCCTTGGAATTCTATTAGT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTTTAATTCTGGTTTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GGTCCCTTGGAATTCTATTAGTGAAGACCCTAAAACCTGTAATAAAAGGGCCCTCTAACTTTGTGACCATTTTTCGCATTTTTCGCGCATCGACCGACTTGAGTTAATTTATCTCGTCTTCTGTAAAAGATATCAAAAAGTAATCAACTAACAAAATATTTATCATAAGATTAGTAATATTTTATCAATTGACCACTTTTTAATATCTCAGTGAAAAACAGTGAAAAACCAGAATTAAAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTCCCTTGGAATTCTATTAGTGAAGACCCTAAAACCTGTAATAAAAGGGCCCTCTAACTTTGTGACCATTTTTCGCATTTTTCGCGCATCGACCGACTTGAGTTAATTYATCTCGTCTTCTGTAAAAGATATCAAAAAGTAATCAACTAACAAAATATTTATCATAAGATTAGTAATATTTTATCAATTGACCACTTTTTAATATCTCAGTGAAAAACAGTGAAAAACCAGAATTAAAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35793</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>204762</contig_pos>
        <strand></strand>
        <context>ttyatctcgt[C/T]ttctgtaaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATTTTTCGCATTTTTCGCGCATCGACCGACTTGAGTTAATTTATCTCGT</left_flank>
        <right_flank>TTCTGTAAAAGATATCAAAAAGTAATCAACTAACAAAATATTTATCATAA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAACTTTTCCTTTTTCCTCTCCCCTTGTGCCATTTCAAATATATACGGAACGGAACAATTTTGTTTTTGACCCTCCAGCCATCAAGGTTCCCCTGTCCCCCTCTTAAAAATTCCTATAAGTATTCAAATTTTTTGGAGCTCCCTCCCTCCCTCCATTCCCTTTTTGCTCCATTTTTCAATTTCTAATATGTTTTCGAATAAGGCTCCTTTCTGCTGCCAGACACAGCAGCCAGCAGGACCTTATTTTTCATTTTTTATGAAAAAAAAACCGGAAGAAAAAAAAAAACGAAAACGAACAAAATAGGGAGGGGGAGCTCCTGGGCGCTCCTTGGAGCAGCGTTTTTTTGCGGCTCAATTGGTTCCAAGATTTTTTTTTGGAAGGTCCCTTGGAATTCTATTAGTGAAGACCCTAAAACCTGTAATAAAAGGGCCCTCTAACTTTGTGACCATTTTTCGCATTTTTCGCGCATCGACCGACTTGAGTTAATTTATCTCGTCTTCTGTAAAAGATATCAAAAAGTAATCAACTAACAAAATATTTATCATAAGATTAGTAATATTTTATCAATTGACCACTTTTTAATATCTCAGTGAAAAACAGTGAAAAACCAGAATTAAAGAAAAGTGCGCTCCACGGATAACTTGAGATGGCGCCCTGCCGAGCGTCTTTGGCTCATTTCATCTTGGTTCTAGTAAGAGACGTCAAAAAGTAATCAACTAACAAAGTATTTATCATAAAATCAGTAATATTTTATCAGTAGACCTCTTTTTGATACCTTCTACAGGAACCGAGATAAAATTGGTCAAAGTTGACCAAAAAAAAATTTTTTTTTGATTTTCTGTAGTTTGAACTGTGTTCGGAATTTTTACGAAAGATTCAAAAATTGGTCGAAAACTACCAAGTCAAAGACCCAAATCCTATATTTGCCAAAAATTAGTTTTTGCAATAACAAGAAGTTTGATTTCTATGAATTTCAAAGTAGGAGAGACATTAAAAA</canonical>
            <polymorphic>TCTAACTTTTCCTTTTTCCTCTCCCCTTGTGCCATTTCAAATATATACGGAACGGAACAATTTTGTTTTTGACCCTCCAGCCATCAAGGTTCCCCTGTCCCCCTCTTAAAAATTCCTATAAGTATTCAAATTTTTTGGAGCTCCCTCCCTCCCTCCATTCCCTTTTTGCTCCATTTTTCAATTTCTAATATGTTTTCGAATAAGGCTCCTTTCTGCTGCCAGACACAGCAGCCAGCAGGACCTTATTTTTCATTTTTTATGAAAAAAAAACCGGAAGAAAAAAAAAAACGAAAACGAACAAAATAGGGAGGGGGAGCTCCTGGGCGCTCCTTGGAGCAGCGTTTTTTTGCGGCTCAATTGGTTCCAAGATTTTTTTTTGGAAGGTCCCTTGGAATTCTATTAGTGAAGACCCTAAAACCTGTAATAAAAGGGCCCTCTAACTTTGTGACCATTTTTCGCATTTTTCGCGCATCGACCGACTTGAGTTAATTTATCTCGTYTTCTGTAAAAGATATCAAAAAGTAATCAACTAACAAAATATTTATCATAAGATTAGTAATATTTTATCAATTGACCACTTTTTAATATCTCAGTGAAAAACAGTGAAAAACCAGAATTAAAGAAAAGTGCGCTCCACGGATAACTTGAGATGGCGCCCTGCCGAGCGTCTTTGGCTCATTTCATCTTGGTTCTAGTAAGAGACGTCAAAAAGTAATCAACTAACAAAGTATTTATCATAAAATCAGTAATATTTTATCAGTAGACCTCTTTTTGATACCTTCTACAGGAACCGAGATAAAATTGGTCAAAGTTGACCAAAAAAAAATTTTTTTTTGATTTTCTGTAGTTTGAACTGTGTTCGGAATTTTTACGAAAGATTCAAAAATTGGTCGAAAACTACCAAGTCAAAGACCCAAATCCTATATTTGCCAAAAATTAGTTTTTGCAATAACAAGAAGTTTGATTTCTATGAATTTCAAAGTAGGAGAGACATTAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTCCCTTGGAATTCTATTAGT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTTTAATTCTGGTTTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GGTCCCTTGGAATTCTATTAGTGAAGACCCTAAAACCTGTAATAAAAGGGCCCTCTAACTTTGTGACCATTTTTCGCATTTTTCGCGCATCGACCGACTTGAGTTAATTTATCTCGTCTTCTGTAAAAGATATCAAAAAGTAATCAACTAACAAAATATTTATCATAAGATTAGTAATATTTTATCAATTGACCACTTTTTAATATCTCAGTGAAAAACAGTGAAAAACCAGAATTAAAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTCCCTTGGAATTCTATTAGTGAAGACCCTAAAACCTGTAATAAAAGGGCCCTCTAACTTTGTGACCATTTTTCGCATTTTTCGCGCATCGACCGACTTGAGTTAATTTATCTCGTYTTCTGTAAAAGATATCAAAAAGTAATCAACTAACAAAATATTTATCATAAGATTAGTAATATTTTATCAATTGACCACTTTTTAATATCTCAGTGAAAAACAGTGAAAAACCAGAATTAAAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35794</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>251136</contig_pos>
        <strand>+</strand>
        <context>TCAACATGGT[A/G]CCATTCCCAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCCAGGACAGCTCAACGCCGATCTCCGCAAGTTGGCCGTCAACATGGT</left_flank>
        <right_flank>CCATTCCCACGTCTTCACTTCTTCATGCCAGGATTCGCTCCACTCTCCGC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGGACAAAGCGGAGCCGGAAACAACTGGGCCAAGGGACACTACACAGAGGGAGCTGAGCTCGTCGACAACGTTCTCGACGTCATCCGCAAGGAGGCTGAGGGATGCGATTGCCTTCAAGGATTCCAGCTGACCCACTCGCTCGGAGGAGGAACCGGATCCGGAATGGGAACCCTTTTGATCTCCAAAATTCGCGAGGAGTACCCAGACAGAATCATGAGCTCATTCTCGGTTGTACCATCACCAAAGGTGTCCGACACCGTCGTCGAGCCATACAACGCCACACTCTCCGTCCATCAGCTTGTCGAGAACACCGATGAGACCTACTGCATTGACAACGAGGCCCTCTACGACATCTGCTACAGAACGTTGAAGCTCACCAACCCAACATACGGAGACTTGAACCATCTCGTCTCGCTGACAATGTCCGGAGTCACCACCTGCCTCCGATTCCCAGGACAGCTCAACGCCGATCTCCGCAAGTTGGCCGTCAACATGGTACCATTCCCACGTCTTCACTTCTTCATGCCAGGATTCGCTCCACTCTCCGCCAAGGGAACCCAGGCTTACCGCGCCTTGACCGTCGCCGAGCTCACCCAACAAATGTTCGATGCCAAGAACATGATGGCCGCTTGCGACCCAAGACACGGACGTTACCTCACCGTCGCCGCCATGTTCCGTGGACGCATGTCGATGAGAGTGAGTTAACCTATATTCTGAATGGTTTAAAAAAATCAATTCTTTCAGGAAGTCGACGAGCAGATGCTCAACGTGCAAAACAAGAACTCCTCCTACTTCGTCGAATGGATTCCAAACAACGTCAAGACCGCCGTCTGCGACATCCCACCACGCGGACTTAAGATGGCTGCCACCTTCGTCGGAAACTCCACCGCCATCCAGGAGCTCTTCAAGCGCATCTCCGAGCAATTCACTGGTAATTTGACTTTTCCATTGAACTAAATATCCCCAATTTTCAGCTATGTTCCGCCGCAAAGCTTTCC</canonical>
            <polymorphic>TCGGACAAAGCGGAGCCGGAAACAACTGGGCCAAGGGACACTACACAGAGGGAGCTGAGCTCGTCGACAACGTTCTCGACGTCATCCGCAAGGAGGCTGAGGGATGCGATTGCCTTCAAGGATTCCAGCTGACCCACTCGCTCGGAGGAGGAACCGGATCCGGAATGGGAACCCTTTTGATCTCCAAAATTCGCGAGGAGTACCCAGACAGAATCATGAGCTCATTCTCGGTTGTACCATCACCAAAGGTGTCCGACACCGTCGTCGAGCCATACAACGCCACACTCTCCGTCCATCAGCTTGTCGAGAACACCGATGAGACCTACTGCATTGACAACGAGGCCCTCTACGACATCTGCTACAGAACGTTGAAGCTCACCAACCCAACATACGGAGACTTGAACCATCTCGTCTCGCTGACAATGTCCGGAGTCACCACCTGCCTCCGATTCCCAGGACAGCTCAACGCCGATCTCCGCAAGTTGGCCGTCAACATGGTRCCATTCCCACGTCTTCACTTCTTCATGCCAGGATTCGCTCCACTCTCCGCCAAGGGAACCCAGGCTTACCGCGCCTTGACCGTCGCCGAGCTCACCCAACAAATGTTCGATGCCAAGAACATGATGGCCGCTTGCGACCCAAGACACGGACGTTACCTCACCGTCGCCGCCATGTTCCGTGGACGCATGTCGATGAGAGTGAGTTAACCTATATTCTGAATGGTTTAAAAAAATCAATTCTTTCAGGAAGTCGACGAGCAGATGCTCAACGTGCAAAACAAGAACTCCTCCTACTTCGTCGAATGGATTCCAAACAACGTCAAGACCGCCGTCTGCGACATCCCACCACGCGGACTTAAGATGGCTGCCACCTTCGTCGGAAACTCCACCGCCATCCAGGAGCTCTTCAAGCGCATCTCCGAGCAATTCACTGGTAATTTGACTTTTCCATTGAACTAAATATCCCCAATTTTCAGCTATGTTCCGCCGCAAAGCTTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGTACC</site>
                <isoschizomers>
                    <enzyme>Acc65I</enzyme>
                    <enzyme>Asp718I</enzyme>
                    <enzyme>KpnI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 264 201 34</canonical_bands>
                <polymorphic_bands>765 201 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACTTGAACCATCTCGTCTC</pcr_primer_p1>
		<pcr_primer_p2>CAGAATATAGGTTAACTCACTCTCAT</pcr_primer_p2>
		<pcr_amplicon_size>324</pcr_amplicon_size>
		<canonical_amplicon>AGACTTGAACCATCTCGTCTCGCTGACAATGTCCGGAGTCACCACCTGCCTCCGATTCCCAGGACAGCTCAACGCCGATCTCCGCAAGTTGGCCGTCAACATGGTACCATTCCCACGTCTTCACTTCTTCATGCCAGGATTCGCTCCACTCTCCGCCAAGGGAACCCAGGCTTACCGCGCCTTGACCGTCGCCGAGCTCACCCAACAAATGTTCGATGCCAAGAACATGATGGCCGCTTGCGACCCAAGACACGGACGTTACCTCACCGTCGCCGCCATGTTCCGTGGACGCATGTCGATGAGAGTGAGTTAACCTATATTCTG</canonical_amplicon>
		<polymorphic_amplicon>AGACTTGAACCATCTCGTCTCGCTGACAATGTCCGGAGTCACCACCTGCCTCCGATTCCCAGGACAGCTCAACGCCGATCTCCGCAAGTTGGCCGTCAACATGGTRCCATTCCCACGTCTTCACTTCTTCATGCCAGGATTCGCTCCACTCTCCGCCAAGGGAACCCAGGCTTACCGCGCCTTGACCGTCGCCGAGCTCACCCAACAAATGTTCGATGCCAAGAACATGATGGCCGCTTGCGACCCAAGACACGGACGTTACCTCACCGTCGCCGCCATGTTCCGTGGACGCATGTCGATGAGAGTGAGTTAACCTATATTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35795</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>251307</contig_pos>
        <strand>+</strand>
        <context>CCGTCGCCGC[C/T]ATGTTCCGTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGATGGCCGCTTGCGACCCAAGACACGGACGTTACCTCACCGTCGCCGC</left_flank>
        <right_flank>ATGTTCCGTGGACGCATGTCGATGAGAGTGAGTTAACCTATATTCTGAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCTTTTGATCTCCAAAATTCGCGAGGAGTACCCAGACAGAATCATGAGCTCATTCTCGGTTGTACCATCACCAAAGGTGTCCGACACCGTCGTCGAGCCATACAACGCCACACTCTCCGTCCATCAGCTTGTCGAGAACACCGATGAGACCTACTGCATTGACAACGAGGCCCTCTACGACATCTGCTACAGAACGTTGAAGCTCACCAACCCAACATACGGAGACTTGAACCATCTCGTCTCGCTGACAATGTCCGGAGTCACCACCTGCCTCCGATTCCCAGGACAGCTCAACGCCGATCTCCGCAAGTTGGCCGTCAACATGGTACCATTCCCACGTCTTCACTTCTTCATGCCAGGATTCGCTCCACTCTCCGCCAAGGGAACCCAGGCTTACCGCGCCTTGACCGTCGCCGAGCTCACCCAACAAATGTTCGATGCCAAGAACATGATGGCCGCTTGCGACCCAAGACACGGACGTTACCTCACCGTCGCCGCCATGTTCCGTGGACGCATGTCGATGAGAGTGAGTTAACCTATATTCTGAATGGTTTAAAAAAATCAATTCTTTCAGGAAGTCGACGAGCAGATGCTCAACGTGCAAAACAAGAACTCCTCCTACTTCGTCGAATGGATTCCAAACAACGTCAAGACCGCCGTCTGCGACATCCCACCACGCGGACTTAAGATGGCTGCCACCTTCGTCGGAAACTCCACCGCCATCCAGGAGCTCTTCAAGCGCATCTCCGAGCAATTCACTGGTAATTTGACTTTTCCATTGAACTAAATATCCCCAATTTTCAGCTATGTTCCGCCGCAAAGCTTTCCTCCATTGGTACACTGGTGAGGGTATGGACGAGATGGAGTTCACCGAGGCTGAGAGCAACATGAACGATCTCATCTCCGAGTACCAGCAATACCAGGAGGCCACCGCCGAGGACGACGTCGACGGATACACCGAGGGAGAGGCCGGAGAGACCTACGAAGAGCAATAGATTC</canonical>
            <polymorphic>CCCTTTTGATCTCCAAAATTCGCGAGGAGTACCCAGACAGAATCATGAGCTCATTCTCGGTTGTACCATCACCAAAGGTGTCCGACACCGTCGTCGAGCCATACAACGCCACACTCTCCGTCCATCAGCTTGTCGAGAACACCGATGAGACCTACTGCATTGACAACGAGGCCCTCTACGACATCTGCTACAGAACGTTGAAGCTCACCAACCCAACATACGGAGACTTGAACCATCTCGTCTCGCTGACAATGTCCGGAGTCACCACCTGCCTCCGATTCCCAGGACAGCTCAACGCCGATCTCCGCAAGTTGGCCGTCAACATGGTACCATTCCCACGTCTTCACTTCTTCATGCCAGGATTCGCTCCACTCTCCGCCAAGGGAACCCAGGCTTACCGCGCCTTGACCGTCGCCGAGCTCACCCAACAAATGTTCGATGCCAAGAACATGATGGCCGCTTGCGACCCAAGACACGGACGTTACCTCACCGTCGCCGCYATGTTCCGTGGACGCATGTCGATGAGAGTGAGTTAACCTATATTCTGAATGGTTTAAAAAAATCAATTCTTTCAGGAAGTCGACGAGCAGATGCTCAACGTGCAAAACAAGAACTCCTCCTACTTCGTCGAATGGATTCCAAACAACGTCAAGACCGCCGTCTGCGACATCCCACCACGCGGACTTAAGATGGCTGCCACCTTCGTCGGAAACTCCACCGCCATCCAGGAGCTCTTCAAGCGCATCTCCGAGCAATTCACTGGTAATTTGACTTTTCCATTGAACTAAATATCCCCAATTTTCAGCTATGTTCCGCCGCAAAGCTTTCCTCCATTGGTACACTGGTGAGGGTATGGACGAGATGGAGTTCACCGAGGCTGAGAGCAACATGAACGATCTCATCTCCGAGTACCAGCAATACCAGGAGGCCACCGCCGAGGACGACGTCGACGGATACACCGAGGGAGAGGCCGGAGAGACCTACGAAGAGCAATAGATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>373 279 112 96 51 44 30 15</canonical_bands>
                <polymorphic_bands>373 279 112 96 66 44 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTCTTCACTTCTTCAT</pcr_primer_p1>
		<pcr_primer_p2>GAAGTAGGAGGAGTTCTTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>CCACGTCTTCACTTCTTCATGCCAGGATTCGCTCCACTCTCCGCCAAGGGAACCCAGGCTTACCGCGCCTTGACCGTCGCCGAGCTCACCCAACAAATGTTCGATGCCAAGAACATGATGGCCGCTTGCGACCCAAGACACGGACGTTACCTCACCGTCGCCGCCATGTTCCGTGGACGCATGTCGATGAGAGTGAGTTAACCTATATTCTGAATGGTTTAAAAAAATCAATTCTTTCAGGAAGTCGACGAGCAGATGCTCAACGTGCAAAACAAGAACTCCTCCTACTTC</canonical_amplicon>
		<polymorphic_amplicon>CCACGTCTTCACTTCTTCATGCCAGGATTCGCTCCACTCTCCGCCAAGGGAACCCAGGCTTACCGCGCCTTGACCGTCGCCGAGCTCACCCAACAAATGTTCGATGCCAAGAACATGATGGCCGCTTGCGACCCAAGACACGGACGTTACCTCACCGTCGCCGCYATGTTCCGTGGACGCATGTCGATGAGAGTGAGTTAACCTATATTCTGAATGGTTTAAAAAAATCAATTCTTTCAGGAAGTCGACGAGCAGATGCTCAACGTGCAAAACAAGAACTCCTCCTACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35796</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>251363</contig_pos>
        <strand>+</strand>
        <context>TGAATGGTTT[A/T]AAAAAATCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCGTGGACGCATGTCGATGAGAGTGAGTTAACCTATATTCTGAATGGTTT</left_flank>
        <right_flank>AAAAAATCAATTCTTTCAGGAAGTCGACGAGCAGATGCTCAACGTGCAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGGTTGTACCATCACCAAAGGTGTCCGACACCGTCGTCGAGCCATACAACGCCACACTCTCCGTCCATCAGCTTGTCGAGAACACCGATGAGACCTACTGCATTGACAACGAGGCCCTCTACGACATCTGCTACAGAACGTTGAAGCTCACCAACCCAACATACGGAGACTTGAACCATCTCGTCTCGCTGACAATGTCCGGAGTCACCACCTGCCTCCGATTCCCAGGACAGCTCAACGCCGATCTCCGCAAGTTGGCCGTCAACATGGTACCATTCCCACGTCTTCACTTCTTCATGCCAGGATTCGCTCCACTCTCCGCCAAGGGAACCCAGGCTTACCGCGCCTTGACCGTCGCCGAGCTCACCCAACAAATGTTCGATGCCAAGAACATGATGGCCGCTTGCGACCCAAGACACGGACGTTACCTCACCGTCGCCGCCATGTTCCGTGGACGCATGTCGATGAGAGTGAGTTAACCTATATTCTGAATGGTTTAAAAAAATCAATTCTTTCAGGAAGTCGACGAGCAGATGCTCAACGTGCAAAACAAGAACTCCTCCTACTTCGTCGAATGGATTCCAAACAACGTCAAGACCGCCGTCTGCGACATCCCACCACGCGGACTTAAGATGGCTGCCACCTTCGTCGGAAACTCCACCGCCATCCAGGAGCTCTTCAAGCGCATCTCCGAGCAATTCACTGGTAATTTGACTTTTCCATTGAACTAAATATCCCCAATTTTCAGCTATGTTCCGCCGCAAAGCTTTCCTCCATTGGTACACTGGTGAGGGTATGGACGAGATGGAGTTCACCGAGGCTGAGAGCAACATGAACGATCTCATCTCCGAGTACCAGCAATACCAGGAGGCCACCGCCGAGGACGACGTCGACGGATACACCGAGGGAGAGGCCGGAGAGACCTACGAAGAGCAATAGATTCTCGACACCCCTAACTTCCATCACAAGCATTCTATTTCTTTCCACAACCTTCTTAAA</canonical>
            <polymorphic>TCGGTTGTACCATCACCAAAGGTGTCCGACACCGTCGTCGAGCCATACAACGCCACACTCTCCGTCCATCAGCTTGTCGAGAACACCGATGAGACCTACTGCATTGACAACGAGGCCCTCTACGACATCTGCTACAGAACGTTGAAGCTCACCAACCCAACATACGGAGACTTGAACCATCTCGTCTCGCTGACAATGTCCGGAGTCACCACCTGCCTCCGATTCCCAGGACAGCTCAACGCCGATCTCCGCAAGTTGGCCGTCAACATGGTACCATTCCCACGTCTTCACTTCTTCATGCCAGGATTCGCTCCACTCTCCGCCAAGGGAACCCAGGCTTACCGCGCCTTGACCGTCGCCGAGCTCACCCAACAAATGTTCGATGCCAAGAACATGATGGCCGCTTGCGACCCAAGACACGGACGTTACCTCACCGTCGCCGCCATGTTCCGTGGACGCATGTCGATGAGAGTGAGTTAACCTATATTCTGAATGGTTTWAAAAAATCAATTCTTTCAGGAAGTCGACGAGCAGATGCTCAACGTGCAAAACAAGAACTCCTCCTACTTCGTCGAATGGATTCCAAACAACGTCAAGACCGCCGTCTGCGACATCCCACCACGCGGACTTAAGATGGCTGCCACCTTCGTCGGAAACTCCACCGCCATCCAGGAGCTCTTCAAGCGCATCTCCGAGCAATTCACTGGTAATTTGACTTTTCCATTGAACTAAATATCCCCAATTTTCAGCTATGTTCCGCCGCAAAGCTTTCCTCCATTGGTACACTGGTGAGGGTATGGACGAGATGGAGTTCACCGAGGCTGAGAGCAACATGAACGATCTCATCTCCGAGTACCAGCAATACCAGGAGGCCACCGCCGAGGACGACGTCGACGGATACACCGAGGGAGAGGCCGGAGAGACCTACGAAGAGCAATAGATTCTCGACACCCCTAACTTCCATCACAAGCATTCTATTTCTTTCCACAACCTTCTTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>477 367 131 21 4</canonical_bands>
                <polymorphic_bands>477 367 152 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTCTTCACTTCTTCAT</pcr_primer_p1>
		<pcr_primer_p2>GAAGTAGGAGGAGTTCTTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>CCACGTCTTCACTTCTTCATGCCAGGATTCGCTCCACTCTCCGCCAAGGGAACCCAGGCTTACCGCGCCTTGACCGTCGCCGAGCTCACCCAACAAATGTTCGATGCCAAGAACATGATGGCCGCTTGCGACCCAAGACACGGACGTTACCTCACCGTCGCCGCCATGTTCCGTGGACGCATGTCGATGAGAGTGAGTTAACCTATATTCTGAATGGTTTAAAAAAATCAATTCTTTCAGGAAGTCGACGAGCAGATGCTCAACGTGCAAAACAAGAACTCCTCCTACTTC</canonical_amplicon>
		<polymorphic_amplicon>CCACGTCTTCACTTCTTCATGCCAGGATTCGCTCCACTCTCCGCCAAGGGAACCCAGGCTTACCGCGCCTTGACCGTCGCCGAGCTCACCCAACAAATGTTCGATGCCAAGAACATGATGGCCGCTTGCGACCCAAGACACGGACGTTACCTCACCGTCGCCGCCATGTTCCGTGGACGCATGTCGATGAGAGTGAGTTAACCTATATTCTGAATGGTTTWAAAAAATCAATTCTTTCAGGAAGTCGACGAGCAGATGCTCAACGTGCAAAACAAGAACTCCTCCTACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35797</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>251535</contig_pos>
        <strand>+</strand>
        <context>CCGCCATCCA[A/G]GAGCTCTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCGGACTTAAGATGGCTGCCACCTTCGTCGGAAACTCCACCGCCATCCA</left_flank>
        <right_flank>GAGCTCTTCAAGCGCATCTCCGAGCAATTCACTGGTAATTTGACTTTTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAACCATCTCGTCTCGCTGACAATGTCCGGAGTCACCACCTGCCTCCGATTCCCAGGACAGCTCAACGCCGATCTCCGCAAGTTGGCCGTCAACATGGTACCATTCCCACGTCTTCACTTCTTCATGCCAGGATTCGCTCCACTCTCCGCCAAGGGAACCCAGGCTTACCGCGCCTTGACCGTCGCCGAGCTCACCCAACAAATGTTCGATGCCAAGAACATGATGGCCGCTTGCGACCCAAGACACGGACGTTACCTCACCGTCGCCGCCATGTTCCGTGGACGCATGTCGATGAGAGTGAGTTAACCTATATTCTGAATGGTTTAAAAAAATCAATTCTTTCAGGAAGTCGACGAGCAGATGCTCAACGTGCAAAACAAGAACTCCTCCTACTTCGTCGAATGGATTCCAAACAACGTCAAGACCGCCGTCTGCGACATCCCACCACGCGGACTTAAGATGGCTGCCACCTTCGTCGGAAACTCCACCGCCATCCAGGAGCTCTTCAAGCGCATCTCCGAGCAATTCACTGGTAATTTGACTTTTCCATTGAACTAAATATCCCCAATTTTCAGCTATGTTCCGCCGCAAAGCTTTCCTCCATTGGTACACTGGTGAGGGTATGGACGAGATGGAGTTCACCGAGGCTGAGAGCAACATGAACGATCTCATCTCCGAGTACCAGCAATACCAGGAGGCCACCGCCGAGGACGACGTCGACGGATACACCGAGGGAGAGGCCGGAGAGACCTACGAAGAGCAATAGATTCTCGACACCCCTAACTTCCATCACAAGCATTCTATTTCTTTCCACAACCTTCTTAAACCCCCCGTATTCGTTTCTTCCCTCACTTGTCTCTCTCACCCGCCCCGCTCTCCGACGTCATCCACCACCCATCCATTCACTAATTTATTTGCTTTTTTGATTGTTTTTCTTCTCGGAGACGTTCGCCGTCCCAAGTTTTATCTCTGAAATTTGCGTCTGAGTGAAGTGAATG</canonical>
            <polymorphic>TGAACCATCTCGTCTCGCTGACAATGTCCGGAGTCACCACCTGCCTCCGATTCCCAGGACAGCTCAACGCCGATCTCCGCAAGTTGGCCGTCAACATGGTACCATTCCCACGTCTTCACTTCTTCATGCCAGGATTCGCTCCACTCTCCGCCAAGGGAACCCAGGCTTACCGCGCCTTGACCGTCGCCGAGCTCACCCAACAAATGTTCGATGCCAAGAACATGATGGCCGCTTGCGACCCAAGACACGGACGTTACCTCACCGTCGCCGCCATGTTCCGTGGACGCATGTCGATGAGAGTGAGTTAACCTATATTCTGAATGGTTTAAAAAAATCAATTCTTTCAGGAAGTCGACGAGCAGATGCTCAACGTGCAAAACAAGAACTCCTCCTACTTCGTCGAATGGATTCCAAACAACGTCAAGACCGCCGTCTGCGACATCCCACCACGCGGACTTAAGATGGCTGCCACCTTCGTCGGAAACTCCACCGCCATCCARGAGCTCTTCAAGCGCATCTCCGAGCAATTCACTGGTAATTTGACTTTTCCATTGAACTAAATATCCCCAATTTTCAGCTATGTTCCGCCGCAAAGCTTTCCTCCATTGGTACACTGGTGAGGGTATGGACGAGATGGAGTTCACCGAGGCTGAGAGCAACATGAACGATCTCATCTCCGAGTACCAGCAATACCAGGAGGCCACCGCCGAGGACGACGTCGACGGATACACCGAGGGAGAGGCCGGAGAGACCTACGAAGAGCAATAGATTCTCGACACCCCTAACTTCCATCACAAGCATTCTATTTCTTTCCACAACCTTCTTAAACCCCCCGTATTCGTTTCTTCCCTCACTTGTCTCTCTCACCCGCCCCGCTCTCCGACGTCATCCACCACCCATCCATTCACTAATTTATTTGCTTTTTTGATTGTTTTTCTTCTCGGAGACGTTCGCCGTCCCAAGTTTTATCTCTGAAATTTGCGTCTGAGTGAAGTGAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>336 306 196 75 55 32</canonical_bands>
                <polymorphic_bands>532 306 75 55 32</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>336 306 196 75 55 32</canonical_bands>
                <polymorphic_bands>532 306 75 55 32</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATCAATTCTTTCAGGAAGTC</pcr_primer_p1>
		<pcr_primer_p2>CTGAAAATTGGGGATATTTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAATCAATTCTTTCAGGAAGTCGACGAGCAGATGCTCAACGTGCAAAACAAGAACTCCTCCTACTTCGTCGAATGGATTCCAAACAACGTCAAGACCGCCGTCTGCGACATCCCACCACGCGGACTTAAGATGGCTGCCACCTTCGTCGGAAACTCCACCGCCATCCAGGAGCTCTTCAAGCGCATCTCCGAGCAATTCACTGGTAATTTGACTTTTCCATTGAACTAAATATCCCCAATTTTCAG</canonical_amplicon>
		<polymorphic_amplicon>AAAATCAATTCTTTCAGGAAGTCGACGAGCAGATGCTCAACGTGCAAAACAAGAACTCCTCCTACTTCGTCGAATGGATTCCAAACAACGTCAAGACCGCCGTCTGCGACATCCCACCACGCGGACTTAAGATGGCTGCCACCTTCGTCGGAAACTCCACCGCCATCCARGAGCTCTTCAAGCGCATCTCCGAGCAATTCACTGGTAATTTGACTTTTCCATTGAACTAAATATCCCCAATTTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35798</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>252986</contig_pos>
        <strand>+</strand>
        <context>CCATAAACCG[A/T]TTYGAAGCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGCAACTCGTCTTCTGTCTCTCCGCCACGTCTTCCACCACCATAAACCG</left_flank>
        <right_flank>TTCGAAGCCAGACTCGGCTCTCGAGGTACCTGGCCGTCGGAACACCGAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTCTTGATTTCAGCAAGCTTATGACCTAATTTGTTCTTATAGGTTGTCTCATTTTTCGAAATAGAATACATTCCGTATTCCAACTGTTCGGCGCACTGCTTCATGGTGATTCCCGCCGGGGGTCCTGACACGATCCAATTGGTTTCTAGGGCTCGGAGCAAGTAGCGCACCCAATTTTCACGGCTCTAAAAATAAATATAGATATCACAGAGCTCACTACTAATAGTAAACTCACTTCTAGAGTGACATTCTTGATCACCGCCTGCTCTGGCTTGATTACAGAAATATCTGTCGCTGGCTCAACTCGTCGCGATCCACGTGGCACAGTTGGAGCCGCCGGCGCCGCCCGTCGTCGCTTGGCAAACTCGCTGTCAATGAGTCCTCGAACTCTCTTGGCCTCCTCGTGCTCCATACGCTCCATGGCATCTTTAGAAGACGTATTCGAGGAAAGCAACTCGTCTTCTGTCTCTCCGCCACGTCTTCCACCACCATAAACCGATTCGAAGCCAGACTCGGCTCTCGAGGTACCTGGCCGTCGGAACACCGAGCCATGAGAATCTCCGGCGTTCTGAAATTTTTTCAAATAAATTTTGAATGAGAAACTTCAGATTTCTCATACCGCGAAGGACTGCGCACTCTGCAACGTCGCCTTCGGATCTCGACAAAAATCGCAATTCGATCCGCACGGCCGACAATCGGTGTCGTCGAAGAACTCGGCGATTGCAACGTGGCGGCATCTGAAAATTTGAAATTTACAGATGTACCTAGGTTATAGACTCACTTGGCACTCTCACAGTACTCCAACATTTTCGCTAGTCCCACTTGTATCGATTTGATCTGCATTGCGGCTTTCTCGCCCTCGGCATTCTTTTTTTCGGCCTGGAAATTCGGAATTTTCGATTTTTCAAGGTTTTTTCTCAGTTTTCATTGTATTTTTCACTGAAAATCGCGAAAAATCAGTCCAAAAAGCATTAAAAAGGCGATATCGTGTCGAGACCC</canonical>
            <polymorphic>AGTCTTGATTTCAGCAAGCTTATGACCTAATTTGTTCTTATAGGTTGTCTCATTTTTCGAAATAGAATACATTCCGTATTCCAACTGTTCGGCGCACTGCTTCATGGTGATTCCCGCCGGGGGTCCTGACACGATCCAATTGGTTTCTAGGGCTCGGAGCAAGTAGCGCACCCAATTTTCACGGCTCTAAAAATAAATATAGATATCACAGAGCTCACTACTAATAGTAAACTCACTTCTAGAGTGACATTCTTGATCACCGCCTGCTCTGGCTTGATTACAGAAATATCTGTCGCTGGCTCAACTCGTCGCGATCCACGTGGCACAGTTGGAGCCGCCGGCGCCGCCCGTCGTCGCTTGGCAAACTCGCTGTCAATGAGTCCTCGAACTCTCTTGGCCTCCTCGTGCTCCATACGCTCCATGGCATCTTTAGAAGACGTATTCGAGGAAAGCAACTCGTCTTCTGTCTCTCCGCCACGTCTTCCACCACCATAAACCGWTTCGAAGCCAGACTCGGCTCTCGAGGTACCTGGCCGTCGGAACACCGAGCCATGAGAATCTCCGGCGTTCTGAAATTTTTTCAAATAAATTTTGAATGAGAAACTTCAGATTTCTCATACCGCGAAGGACTGCGCACTCTGCAACGTCGCCTTCGGATCTCGACAAAAATCGCAATTCGATCCGCACGGCCGACAATCGGTGTCGTCGAAGAACTCGGCGATTGCAACGTGGCGGCATCTGAAAATTTGAAATTTACAGATGTACCTAGGTTATAGACTCACTTGGCACTCTCACAGTACTCCAACATTTTCGCTAGTCCCACTTGTATCGATTTGATCTGCATTGCGGCTTTCTCGCCCTCGGCATTCTTTTTTTCGGCCTGGAAATTCGGAATTTTCGATTTTTCAAGGTTTTTTCTCAGTTTTCATTGTATTTTTCACTGAAAATCGCGAAAAATCAGTCCAAAAAGCATTAAAAAGGCGATATCGTGTCGAGACCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>269 224 220 121 109 45 12</canonical_bands>
                <polymorphic_bands>269 224 220 133 109 45</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>444 390 109 57</canonical_bands>
                <polymorphic_bands>447 444 109</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAGTCCTCGAACTCTCTTG</pcr_primer_p1>
		<pcr_primer_p2>GCGGTATGAGAAATCTGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATGAGTCCTCGAACTCTCTTGGCCTCCTCGTGCTCCATACGCTCCATGGCATCTTTAGAAGACGTATTCGAGGAAAGCAACTCGTCTTCTGTCTCTCCGCCACGTCTTCCACCACCATAAACCGATTCGAAGCCAGACTCGGCTCTCGAGGTACCTGGCCGTCGGAACACCGAGCCATGAGAATCTCCGGCGTTCTGAAATTTTTTCAAATAAATTTTGAATGAGAAACTTCAGATTTCTCATACCGC</canonical_amplicon>
		<polymorphic_amplicon>ATGAGTCCTCGAACTCTCTTGGCCTCCTCGTGCTCCATACGCTCCATGGCATCTTTAGAAGACGTATTCGAGGAAAGCAACTCGTCTTCTGTCTCTCCGCCACGTCTTCCACCACCATAAACCGWTTCGAAGCCAGACTCGGCTCTCGAGGTACCTGGCCGTCGGAACACCGAGCCATGAGAATCTCCGGCGTTCTGAAATTTTTTCAAATAAATTTTGAATGAGAAACTTCAGATTTCTCATACCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35799</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>252989</contig_pos>
        <strand>+</strand>
        <context>TAAACCGWTT[C/T]GAAGCCAGAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAACTCGTCTTCTGTCTCTCCGCCACGTCTTCCACCACCATAAACCGATT</left_flank>
        <right_flank>GAAGCCAGACTCGGCTCTCGAGGTACCTGGCCGTCGGAACACCGAGCCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTGATTTCAGCAAGCTTATGACCTAATTTGTTCTTATAGGTTGTCTCATTTTTCGAAATAGAATACATTCCGTATTCCAACTGTTCGGCGCACTGCTTCATGGTGATTCCCGCCGGGGGTCCTGACACGATCCAATTGGTTTCTAGGGCTCGGAGCAAGTAGCGCACCCAATTTTCACGGCTCTAAAAATAAATATAGATATCACAGAGCTCACTACTAATAGTAAACTCACTTCTAGAGTGACATTCTTGATCACCGCCTGCTCTGGCTTGATTACAGAAATATCTGTCGCTGGCTCAACTCGTCGCGATCCACGTGGCACAGTTGGAGCCGCCGGCGCCGCCCGTCGTCGCTTGGCAAACTCGCTGTCAATGAGTCCTCGAACTCTCTTGGCCTCCTCGTGCTCCATACGCTCCATGGCATCTTTAGAAGACGTATTCGAGGAAAGCAACTCGTCTTCTGTCTCTCCGCCACGTCTTCCACCACCATAAACCGATTCGAAGCCAGACTCGGCTCTCGAGGTACCTGGCCGTCGGAACACCGAGCCATGAGAATCTCCGGCGTTCTGAAATTTTTTCAAATAAATTTTGAATGAGAAACTTCAGATTTCTCATACCGCGAAGGACTGCGCACTCTGCAACGTCGCCTTCGGATCTCGACAAAAATCGCAATTCGATCCGCACGGCCGACAATCGGTGTCGTCGAAGAACTCGGCGATTGCAACGTGGCGGCATCTGAAAATTTGAAATTTACAGATGTACCTAGGTTATAGACTCACTTGGCACTCTCACAGTACTCCAACATTTTCGCTAGTCCCACTTGTATCGATTTGATCTGCATTGCGGCTTTCTCGCCCTCGGCATTCTTTTTTTCGGCCTGGAAATTCGGAATTTTCGATTTTTCAAGGTTTTTTCTCAGTTTTCATTGTATTTTTCACTGAAAATCGCGAAAAATCAGTCCAAAAAGCATTAAAAAGGCGATATCGTGTCGAGACCCAAA</canonical>
            <polymorphic>CTTGATTTCAGCAAGCTTATGACCTAATTTGTTCTTATAGGTTGTCTCATTTTTCGAAATAGAATACATTCCGTATTCCAACTGTTCGGCGCACTGCTTCATGGTGATTCCCGCCGGGGGTCCTGACACGATCCAATTGGTTTCTAGGGCTCGGAGCAAGTAGCGCACCCAATTTTCACGGCTCTAAAAATAAATATAGATATCACAGAGCTCACTACTAATAGTAAACTCACTTCTAGAGTGACATTCTTGATCACCGCCTGCTCTGGCTTGATTACAGAAATATCTGTCGCTGGCTCAACTCGTCGCGATCCACGTGGCACAGTTGGAGCCGCCGGCGCCGCCCGTCGTCGCTTGGCAAACTCGCTGTCAATGAGTCCTCGAACTCTCTTGGCCTCCTCGTGCTCCATACGCTCCATGGCATCTTTAGAAGACGTATTCGAGGAAAGCAACTCGTCTTCTGTCTCTCCGCCACGTCTTCCACCACCATAAACCGATTYGAAGCCAGACTCGGCTCTCGAGGTACCTGGCCGTCGGAACACCGAGCCATGAGAATCTCCGGCGTTCTGAAATTTTTTCAAATAAATTTTGAATGAGAAACTTCAGATTTCTCATACCGCGAAGGACTGCGCACTCTGCAACGTCGCCTTCGGATCTCGACAAAAATCGCAATTCGATCCGCACGGCCGACAATCGGTGTCGTCGAAGAACTCGGCGATTGCAACGTGGCGGCATCTGAAAATTTGAAATTTACAGATGTACCTAGGTTATAGACTCACTTGGCACTCTCACAGTACTCCAACATTTTCGCTAGTCCCACTTGTATCGATTTGATCTGCATTGCGGCTTTCTCGCCCTCGGCATTCTTTTTTTCGGCCTGGAAATTCGGAATTTTCGATTTTTCAAGGTTTTTTCTCAGTTTTCATTGTATTTTTCACTGAAAATCGCGAAAAATCAGTCCAAAAAGCATTAAAAAGGCGATATCGTGTCGAGACCCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 445 54</canonical_bands>
                <polymorphic_bands>946 54</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>327 139 123 94 69 59 59 55 29 19 17 10</canonical_bands>
                <polymorphic_bands>327 139 123 94 78 69 59 55 29 17 10</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>269 227 220 121 106 45 12</canonical_bands>
                <polymorphic_bands>269 227 220 133 106 45</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>447 390 106 57</canonical_bands>
                <polymorphic_bands>447 447 106</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAGTCCTCGAACTCTCTTG</pcr_primer_p1>
		<pcr_primer_p2>GCGGTATGAGAAATCTGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATGAGTCCTCGAACTCTCTTGGCCTCCTCGTGCTCCATACGCTCCATGGCATCTTTAGAAGACGTATTCGAGGAAAGCAACTCGTCTTCTGTCTCTCCGCCACGTCTTCCACCACCATAAACCGATTCGAAGCCAGACTCGGCTCTCGAGGTACCTGGCCGTCGGAACACCGAGCCATGAGAATCTCCGGCGTTCTGAAATTTTTTCAAATAAATTTTGAATGAGAAACTTCAGATTTCTCATACCGC</canonical_amplicon>
		<polymorphic_amplicon>ATGAGTCCTCGAACTCTCTTGGCCTCCTCGTGCTCCATACGCTCCATGGCATCTTTAGAAGACGTATTCGAGGAAAGCAACTCGTCTTCTGTCTCTCCGCCACGTCTTCCACCACCATAAACCGATTYGAAGCCAGACTCGGCTCTCGAGGTACCTGGCCGTCGGAACACCGAGCCATGAGAATCTCCGGCGTTCTGAAATTTTTTCAAATAAATTTTGAATGAGAAACTTCAGATTTCTCATACCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35800</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>253087</contig_pos>
        <strand>+</strand>
        <context>TTTGAATGAG[A/G]AACTTCAGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATGAGAATCTCCGGCGTTCTGAAATTTTTTCAAATAAATTTTGAATGAG</left_flank>
        <right_flank>AACTTCAGATTTCTCATACCGCGAAGGACTGCGCACTCTGCAACGTCGCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATGGTGATTCCCGCCGGGGGTCCTGACACGATCCAATTGGTTTCTAGGGCTCGGAGCAAGTAGCGCACCCAATTTTCACGGCTCTAAAAATAAATATAGATATCACAGAGCTCACTACTAATAGTAAACTCACTTCTAGAGTGACATTCTTGATCACCGCCTGCTCTGGCTTGATTACAGAAATATCTGTCGCTGGCTCAACTCGTCGCGATCCACGTGGCACAGTTGGAGCCGCCGGCGCCGCCCGTCGTCGCTTGGCAAACTCGCTGTCAATGAGTCCTCGAACTCTCTTGGCCTCCTCGTGCTCCATACGCTCCATGGCATCTTTAGAAGACGTATTCGAGGAAAGCAACTCGTCTTCTGTCTCTCCGCCACGTCTTCCACCACCATAAACCGATTCGAAGCCAGACTCGGCTCTCGAGGTACCTGGCCGTCGGAACACCGAGCCATGAGAATCTCCGGCGTTCTGAAATTTTTTCAAATAAATTTTGAATGAGAAACTTCAGATTTCTCATACCGCGAAGGACTGCGCACTCTGCAACGTCGCCTTCGGATCTCGACAAAAATCGCAATTCGATCCGCACGGCCGACAATCGGTGTCGTCGAAGAACTCGGCGATTGCAACGTGGCGGCATCTGAAAATTTGAAATTTACAGATGTACCTAGGTTATAGACTCACTTGGCACTCTCACAGTACTCCAACATTTTCGCTAGTCCCACTTGTATCGATTTGATCTGCATTGCGGCTTTCTCGCCCTCGGCATTCTTTTTTTCGGCCTGGAAATTCGGAATTTTCGATTTTTCAAGGTTTTTTCTCAGTTTTCATTGTATTTTTCACTGAAAATCGCGAAAAATCAGTCCAAAAAGCATTAAAAAGGCGATATCGTGTCGAGACCCAAACAATTTTAAAAGCATGTTCCTTTAAACTACGGTAGTCTTGAGAAAATCATTTTTGGGCCTAAATCATGCCATTTTTTCTTATTTTTGCTGATTTTCGC</canonical>
            <polymorphic>TCATGGTGATTCCCGCCGGGGGTCCTGACACGATCCAATTGGTTTCTAGGGCTCGGAGCAAGTAGCGCACCCAATTTTCACGGCTCTAAAAATAAATATAGATATCACAGAGCTCACTACTAATAGTAAACTCACTTCTAGAGTGACATTCTTGATCACCGCCTGCTCTGGCTTGATTACAGAAATATCTGTCGCTGGCTCAACTCGTCGCGATCCACGTGGCACAGTTGGAGCCGCCGGCGCCGCCCGTCGTCGCTTGGCAAACTCGCTGTCAATGAGTCCTCGAACTCTCTTGGCCTCCTCGTGCTCCATACGCTCCATGGCATCTTTAGAAGACGTATTCGAGGAAAGCAACTCGTCTTCTGTCTCTCCGCCACGTCTTCCACCACCATAAACCGATTCGAAGCCAGACTCGGCTCTCGAGGTACCTGGCCGTCGGAACACCGAGCCATGAGAATCTCCGGCGTTCTGAAATTTTTTCAAATAAATTTTGAATGAGRAACTTCAGATTTCTCATACCGCGAAGGACTGCGCACTCTGCAACGTCGCCTTCGGATCTCGACAAAAATCGCAATTCGATCCGCACGGCCGACAATCGGTGTCGTCGAAGAACTCGGCGATTGCAACGTGGCGGCATCTGAAAATTTGAAATTTACAGATGTACCTAGGTTATAGACTCACTTGGCACTCTCACAGTACTCCAACATTTTCGCTAGTCCCACTTGTATCGATTTGATCTGCATTGCGGCTTTCTCGCCCTCGGCATTCTTTTTTTCGGCCTGGAAATTCGGAATTTTCGATTTTTCAAGGTTTTTTCTCAGTTTTCATTGTATTTTTCACTGAAAATCGCGAAAAATCAGTCCAAAAAGCATTAAAAAGGCGATATCGTGTCGAGACCCAAACAATTTTAAAAGCATGTTCCTTTAAACTACGGTAGTCTTGAGAAAATCATTTTTGGGCCTAAATCATGCCATTTTTTCTTATTTTTGCTGATTTTCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCAACTCGTCTTCTGTCTCT</pcr_primer_p1>
		<pcr_primer_p2>GTGAGTCTATAACCTAGGTACATCTG</pcr_primer_p2>
		<pcr_amplicon_size>332</pcr_amplicon_size>
		<canonical_amplicon>AGCAACTCGTCTTCTGTCTCTCCGCCACGTCTTCCACCACCATAAACCGATTCGAAGCCAGACTCGGCTCTCGAGGTACCTGGCCGTCGGAACACCGAGCCATGAGAATCTCCGGCGTTCTGAAATTTTTTCAAATAAATTTTGAATGAGAAACTTCAGATTTCTCATACCGCGAAGGACTGCGCACTCTGCAACGTCGCCTTCGGATCTCGACAAAAATCGCAATTCGATCCGCACGGCCGACAATCGGTGTCGTCGAAGAACTCGGCGATTGCAACGTGGCGGCATCTGAAAATTTGAAATTTACAGATGTACCTAGGTTATAGACTCAC</canonical_amplicon>
		<polymorphic_amplicon>AGCAACTCGTCTTCTGTCTCTCCGCCACGTCTTCCACCACCATAAACCGATTCGAAGCCAGACTCGGCTCTCGAGGTACCTGGCCGTCGGAACACCGAGCCATGAGAATCTCCGGCGTTCTGAAATTTTTTCAAATAAATTTTGAATGAGRAACTTCAGATTTCTCATACCGCGAAGGACTGCGCACTCTGCAACGTCGCCTTCGGATCTCGACAAAAATCGCAATTCGATCCGCACGGCCGACAATCGGTGTCGTCGAAGAACTCGGCGATTGCAACGTGGCGGCATCTGAAAATTTGAAATTTACAGATGTACCTAGGTTATAGACTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35801</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>253115</contig_pos>
        <strand>+</strand>
        <context>ACCGCGAAGG[A/C]CTGCGCACTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCAAATAAATTTTGAATGAGAAACTTCAGATTTCTCATACCGCGAAGG</left_flank>
        <right_flank>CTGCGCACTCTGCAACGTCGCCTTCGGATCTCGACAAAAATCGCAATTCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACGATCCAATTGGTTTCTAGGGCTCGGAGCAAGTAGCGCACCCAATTTTCACGGCTCTAAAAATAAATATAGATATCACAGAGCTCACTACTAATAGTAAACTCACTTCTAGAGTGACATTCTTGATCACCGCCTGCTCTGGCTTGATTACAGAAATATCTGTCGCTGGCTCAACTCGTCGCGATCCACGTGGCACAGTTGGAGCCGCCGGCGCCGCCCGTCGTCGCTTGGCAAACTCGCTGTCAATGAGTCCTCGAACTCTCTTGGCCTCCTCGTGCTCCATACGCTCCATGGCATCTTTAGAAGACGTATTCGAGGAAAGCAACTCGTCTTCTGTCTCTCCGCCACGTCTTCCACCACCATAAACCGATTCGAAGCCAGACTCGGCTCTCGAGGTACCTGGCCGTCGGAACACCGAGCCATGAGAATCTCCGGCGTTCTGAAATTTTTTCAAATAAATTTTGAATGAGAAACTTCAGATTTCTCATACCGCGAAGGACTGCGCACTCTGCAACGTCGCCTTCGGATCTCGACAAAAATCGCAATTCGATCCGCACGGCCGACAATCGGTGTCGTCGAAGAACTCGGCGATTGCAACGTGGCGGCATCTGAAAATTTGAAATTTACAGATGTACCTAGGTTATAGACTCACTTGGCACTCTCACAGTACTCCAACATTTTCGCTAGTCCCACTTGTATCGATTTGATCTGCATTGCGGCTTTCTCGCCCTCGGCATTCTTTTTTTCGGCCTGGAAATTCGGAATTTTCGATTTTTCAAGGTTTTTTCTCAGTTTTCATTGTATTTTTCACTGAAAATCGCGAAAAATCAGTCCAAAAAGCATTAAAAAGGCGATATCGTGTCGAGACCCAAACAATTTTAAAAGCATGTTCCTTTAAACTACGGTAGTCTTGAGAAAATCATTTTTGGGCCTAAATCATGCCATTTTTTCTTATTTTTGCTGATTTTCGCCGATTTTGTTGGTTCTAGCGTGATTCTA</canonical>
            <polymorphic>CACGATCCAATTGGTTTCTAGGGCTCGGAGCAAGTAGCGCACCCAATTTTCACGGCTCTAAAAATAAATATAGATATCACAGAGCTCACTACTAATAGTAAACTCACTTCTAGAGTGACATTCTTGATCACCGCCTGCTCTGGCTTGATTACAGAAATATCTGTCGCTGGCTCAACTCGTCGCGATCCACGTGGCACAGTTGGAGCCGCCGGCGCCGCCCGTCGTCGCTTGGCAAACTCGCTGTCAATGAGTCCTCGAACTCTCTTGGCCTCCTCGTGCTCCATACGCTCCATGGCATCTTTAGAAGACGTATTCGAGGAAAGCAACTCGTCTTCTGTCTCTCCGCCACGTCTTCCACCACCATAAACCGATTCGAAGCCAGACTCGGCTCTCGAGGTACCTGGCCGTCGGAACACCGAGCCATGAGAATCTCCGGCGTTCTGAAATTTTTTCAAATAAATTTTGAATGAGAAACTTCAGATTTCTCATACCGCGAAGGMCTGCGCACTCTGCAACGTCGCCTTCGGATCTCGACAAAAATCGCAATTCGATCCGCACGGCCGACAATCGGTGTCGTCGAAGAACTCGGCGATTGCAACGTGGCGGCATCTGAAAATTTGAAATTTACAGATGTACCTAGGTTATAGACTCACTTGGCACTCTCACAGTACTCCAACATTTTCGCTAGTCCCACTTGTATCGATTTGATCTGCATTGCGGCTTTCTCGCCCTCGGCATTCTTTTTTTCGGCCTGGAAATTCGGAATTTTCGATTTTTCAAGGTTTTTTCTCAGTTTTCATTGTATTTTTCACTGAAAATCGCGAAAAATCAGTCCAAAAAGCATTAAAAAGGCGATATCGTGTCGAGACCCAAACAATTTTAAAAGCATGTTCCTTTAAACTACGGTAGTCTTGAGAAAATCATTTTTGGGCCTAAATCATGCCATTTTTTCTTATTTTTGCTGATTTTCGCCGATTTTGTTGGTTCTAGCGTGATTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCAACTCGTCTTCTGTCTCT</pcr_primer_p1>
		<pcr_primer_p2>GTGAGTCTATAACCTAGGTACATCTG</pcr_primer_p2>
		<pcr_amplicon_size>332</pcr_amplicon_size>
		<canonical_amplicon>AGCAACTCGTCTTCTGTCTCTCCGCCACGTCTTCCACCACCATAAACCGATTCGAAGCCAGACTCGGCTCTCGAGGTACCTGGCCGTCGGAACACCGAGCCATGAGAATCTCCGGCGTTCTGAAATTTTTTCAAATAAATTTTGAATGAGAAACTTCAGATTTCTCATACCGCGAAGGACTGCGCACTCTGCAACGTCGCCTTCGGATCTCGACAAAAATCGCAATTCGATCCGCACGGCCGACAATCGGTGTCGTCGAAGAACTCGGCGATTGCAACGTGGCGGCATCTGAAAATTTGAAATTTACAGATGTACCTAGGTTATAGACTCAC</canonical_amplicon>
		<polymorphic_amplicon>AGCAACTCGTCTTCTGTCTCTCCGCCACGTCTTCCACCACCATAAACCGATTCGAAGCCAGACTCGGCTCTCGAGGTACCTGGCCGTCGGAACACCGAGCCATGAGAATCTCCGGCGTTCTGAAATTTTTTCAAATAAATTTTGAATGAGAAACTTCAGATTTCTCATACCGCGAAGGMCTGCGCACTCTGCAACGTCGCCTTCGGATCTCGACAAAAATCGCAATTCGATCCGCACGGCCGACAATCGGTGTCGTCGAAGAACTCGGCGATTGCAACGTGGCGGCATCTGAAAATTTGAAATTTACAGATGTACCTAGGTTATAGACTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35802</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>253131</contig_pos>
        <strand>+</strand>
        <context>CACTCTGCAA[C/T]GTCGCCTTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGAGAAACTTCAGATTTCTCATACCGCGAAGGACTGCGCACTCTGCAA</left_flank>
        <right_flank>GTCGCCTTCGGATCTCGACAAAAATCGCAATTCGATCCGCACGGCCGACA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTAGGGCTCGGAGCAAGTAGCGCACCCAATTTTCACGGCTCTAAAAATAAATATAGATATCACAGAGCTCACTACTAATAGTAAACTCACTTCTAGAGTGACATTCTTGATCACCGCCTGCTCTGGCTTGATTACAGAAATATCTGTCGCTGGCTCAACTCGTCGCGATCCACGTGGCACAGTTGGAGCCGCCGGCGCCGCCCGTCGTCGCTTGGCAAACTCGCTGTCAATGAGTCCTCGAACTCTCTTGGCCTCCTCGTGCTCCATACGCTCCATGGCATCTTTAGAAGACGTATTCGAGGAAAGCAACTCGTCTTCTGTCTCTCCGCCACGTCTTCCACCACCATAAACCGATTCGAAGCCAGACTCGGCTCTCGAGGTACCTGGCCGTCGGAACACCGAGCCATGAGAATCTCCGGCGTTCTGAAATTTTTTCAAATAAATTTTGAATGAGAAACTTCAGATTTCTCATACCGCGAAGGACTGCGCACTCTGCAACGTCGCCTTCGGATCTCGACAAAAATCGCAATTCGATCCGCACGGCCGACAATCGGTGTCGTCGAAGAACTCGGCGATTGCAACGTGGCGGCATCTGAAAATTTGAAATTTACAGATGTACCTAGGTTATAGACTCACTTGGCACTCTCACAGTACTCCAACATTTTCGCTAGTCCCACTTGTATCGATTTGATCTGCATTGCGGCTTTCTCGCCCTCGGCATTCTTTTTTTCGGCCTGGAAATTCGGAATTTTCGATTTTTCAAGGTTTTTTCTCAGTTTTCATTGTATTTTTCACTGAAAATCGCGAAAAATCAGTCCAAAAAGCATTAAAAAGGCGATATCGTGTCGAGACCCAAACAATTTTAAAAGCATGTTCCTTTAAACTACGGTAGTCTTGAGAAAATCATTTTTGGGCCTAAATCATGCCATTTTTTCTTATTTTTGCTGATTTTCGCCGATTTTGTTGGTTCTAGCGTGATTCTAATCGATTTCAGTCAAA</canonical>
            <polymorphic>TCTAGGGCTCGGAGCAAGTAGCGCACCCAATTTTCACGGCTCTAAAAATAAATATAGATATCACAGAGCTCACTACTAATAGTAAACTCACTTCTAGAGTGACATTCTTGATCACCGCCTGCTCTGGCTTGATTACAGAAATATCTGTCGCTGGCTCAACTCGTCGCGATCCACGTGGCACAGTTGGAGCCGCCGGCGCCGCCCGTCGTCGCTTGGCAAACTCGCTGTCAATGAGTCCTCGAACTCTCTTGGCCTCCTCGTGCTCCATACGCTCCATGGCATCTTTAGAAGACGTATTCGAGGAAAGCAACTCGTCTTCTGTCTCTCCGCCACGTCTTCCACCACCATAAACCGATTCGAAGCCAGACTCGGCTCTCGAGGTACCTGGCCGTCGGAACACCGAGCCATGAGAATCTCCGGCGTTCTGAAATTTTTTCAAATAAATTTTGAATGAGAAACTTCAGATTTCTCATACCGCGAAGGACTGCGCACTCTGCAAYGTCGCCTTCGGATCTCGACAAAAATCGCAATTCGATCCGCACGGCCGACAATCGGTGTCGTCGAAGAACTCGGCGATTGCAACGTGGCGGCATCTGAAAATTTGAAATTTACAGATGTACCTAGGTTATAGACTCACTTGGCACTCTCACAGTACTCCAACATTTTCGCTAGTCCCACTTGTATCGATTTGATCTGCATTGCGGCTTTCTCGCCCTCGGCATTCTTTTTTTCGGCCTGGAAATTCGGAATTTTCGATTTTTCAAGGTTTTTTCTCAGTTTTCATTGTATTTTTCACTGAAAATCGCGAAAAATCAGTCCAAAAAGCATTAAAAAGGCGATATCGTGTCGAGACCCAAACAATTTTAAAAGCATGTTCCTTTAAACTACGGTAGTCTTGAGAAAATCATTTTTGGGCCTAAATCATGCCATTTTTTCTTATTTTTGCTGATTTTCGCCGATTTTGTTGGTTCTAGCGTGATTCTAATCGATTTCAGTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>437 186 166 110 59 42</canonical_bands>
                <polymorphic_bands>437 186 169 166 42</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>418 173 167 119 83 40</canonical_bands>
                <polymorphic_bands>418 250 173 119 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCAACTCGTCTTCTGTCTCT</pcr_primer_p1>
		<pcr_primer_p2>GTGAGTCTATAACCTAGGTACATCTG</pcr_primer_p2>
		<pcr_amplicon_size>332</pcr_amplicon_size>
		<canonical_amplicon>AGCAACTCGTCTTCTGTCTCTCCGCCACGTCTTCCACCACCATAAACCGATTCGAAGCCAGACTCGGCTCTCGAGGTACCTGGCCGTCGGAACACCGAGCCATGAGAATCTCCGGCGTTCTGAAATTTTTTCAAATAAATTTTGAATGAGAAACTTCAGATTTCTCATACCGCGAAGGACTGCGCACTCTGCAACGTCGCCTTCGGATCTCGACAAAAATCGCAATTCGATCCGCACGGCCGACAATCGGTGTCGTCGAAGAACTCGGCGATTGCAACGTGGCGGCATCTGAAAATTTGAAATTTACAGATGTACCTAGGTTATAGACTCAC</canonical_amplicon>
		<polymorphic_amplicon>AGCAACTCGTCTTCTGTCTCTCCGCCACGTCTTCCACCACCATAAACCGATTCGAAGCCAGACTCGGCTCTCGAGGTACCTGGCCGTCGGAACACCGAGCCATGAGAATCTCCGGCGTTCTGAAATTTTTTCAAATAAATTTTGAATGAGAAACTTCAGATTTCTCATACCGCGAAGGACTGCGCACTCTGCAAYGTCGCCTTCGGATCTCGACAAAAATCGCAATTCGATCCGCACGGCCGACAATCGGTGTCGTCGAAGAACTCGGCGATTGCAACGTGGCGGCATCTGAAAATTTGAAATTTACAGATGTACCTAGGTTATAGACTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35803</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>253212</contig_pos>
        <strand>+</strand>
        <context>CGGCGATTGC[A/C]ACGTGGCGGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCGATCCGCACGGCCGACAATCGGTGTCGTCGAAGAACTCGGCGATTGC</left_flank>
        <right_flank>ACGTGGCGGCATCTGAAAATTTGAAATTTACAGATGTACCTAGGTTATAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAAACTCACTTCTAGAGTGACATTCTTGATCACCGCCTGCTCTGGCTTGATTACAGAAATATCTGTCGCTGGCTCAACTCGTCGCGATCCACGTGGCACAGTTGGAGCCGCCGGCGCCGCCCGTCGTCGCTTGGCAAACTCGCTGTCAATGAGTCCTCGAACTCTCTTGGCCTCCTCGTGCTCCATACGCTCCATGGCATCTTTAGAAGACGTATTCGAGGAAAGCAACTCGTCTTCTGTCTCTCCGCCACGTCTTCCACCACCATAAACCGATTCGAAGCCAGACTCGGCTCTCGAGGTACCTGGCCGTCGGAACACCGAGCCATGAGAATCTCCGGCGTTCTGAAATTTTTTCAAATAAATTTTGAATGAGAAACTTCAGATTTCTCATACCGCGAAGGACTGCGCACTCTGCAACGTCGCCTTCGGATCTCGACAAAAATCGCAATTCGATCCGCACGGCCGACAATCGGTGTCGTCGAAGAACTCGGCGATTGCAACGTGGCGGCATCTGAAAATTTGAAATTTACAGATGTACCTAGGTTATAGACTCACTTGGCACTCTCACAGTACTCCAACATTTTCGCTAGTCCCACTTGTATCGATTTGATCTGCATTGCGGCTTTCTCGCCCTCGGCATTCTTTTTTTCGGCCTGGAAATTCGGAATTTTCGATTTTTCAAGGTTTTTTCTCAGTTTTCATTGTATTTTTCACTGAAAATCGCGAAAAATCAGTCCAAAAAGCATTAAAAAGGCGATATCGTGTCGAGACCCAAACAATTTTAAAAGCATGTTCCTTTAAACTACGGTAGTCTTGAGAAAATCATTTTTGGGCCTAAATCATGCCATTTTTTCTTATTTTTGCTGATTTTCGCCGATTTTGTTGGTTCTAGCGTGATTCTAATCGATTTCAGTCAAAAGTCGAAGAAAAATCCCAAAAATCAGCAGAAAAATCGGGAAAAATAGGCAAAAATTGAAAAATTTTGCGATTTCGTGTCGA</canonical>
            <polymorphic>GTAAACTCACTTCTAGAGTGACATTCTTGATCACCGCCTGCTCTGGCTTGATTACAGAAATATCTGTCGCTGGCTCAACTCGTCGCGATCCACGTGGCACAGTTGGAGCCGCCGGCGCCGCCCGTCGTCGCTTGGCAAACTCGCTGTCAATGAGTCCTCGAACTCTCTTGGCCTCCTCGTGCTCCATACGCTCCATGGCATCTTTAGAAGACGTATTCGAGGAAAGCAACTCGTCTTCTGTCTCTCCGCCACGTCTTCCACCACCATAAACCGATTCGAAGCCAGACTCGGCTCTCGAGGTACCTGGCCGTCGGAACACCGAGCCATGAGAATCTCCGGCGTTCTGAAATTTTTTCAAATAAATTTTGAATGAGAAACTTCAGATTTCTCATACCGCGAAGGACTGCGCACTCTGCAACGTCGCCTTCGGATCTCGACAAAAATCGCAATTCGATCCGCACGGCCGACAATCGGTGTCGTCGAAGAACTCGGCGATTGCMACGTGGCGGCATCTGAAAATTTGAAATTTACAGATGTACCTAGGTTATAGACTCACTTGGCACTCTCACAGTACTCCAACATTTTCGCTAGTCCCACTTGTATCGATTTGATCTGCATTGCGGCTTTCTCGCCCTCGGCATTCTTTTTTTCGGCCTGGAAATTCGGAATTTTCGATTTTTCAAGGTTTTTTCTCAGTTTTCATTGTATTTTTCACTGAAAATCGCGAAAAATCAGTCCAAAAAGCATTAAAAAGGCGATATCGTGTCGAGACCCAAACAATTTTAAAAGCATGTTCCTTTAAACTACGGTAGTCTTGAGAAAATCATTTTTGGGCCTAAATCATGCCATTTTTTCTTATTTTTGCTGATTTTCGCCGATTTTGTTGGTTCTAGCGTGATTCTAATCGATTTCAGTCAAAAGTCGAAGAAAAATCCCAAAAATCAGCAGAAAAATCGGGAAAAATAGGCAAAAATTGAAAAATTTTGCGATTTCGTGTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>415 385 117 83</canonical_bands>
                <polymorphic_bands>415 385 200</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCAACTCGTCTTCTGTCTCT</pcr_primer_p1>
		<pcr_primer_p2>GTGCCAAGTGAGTCTATAACCTA</pcr_primer_p2>
		<pcr_amplicon_size>339</pcr_amplicon_size>
		<canonical_amplicon>AGCAACTCGTCTTCTGTCTCTCCGCCACGTCTTCCACCACCATAAACCGATTCGAAGCCAGACTCGGCTCTCGAGGTACCTGGCCGTCGGAACACCGAGCCATGAGAATCTCCGGCGTTCTGAAATTTTTTCAAATAAATTTTGAATGAGAAACTTCAGATTTCTCATACCGCGAAGGACTGCGCACTCTGCAACGTCGCCTTCGGATCTCGACAAAAATCGCAATTCGATCCGCACGGCCGACAATCGGTGTCGTCGAAGAACTCGGCGATTGCAACGTGGCGGCATCTGAAAATTTGAAATTTACAGATGTACCTAGGTTATAGACTCACTTGGCAC</canonical_amplicon>
		<polymorphic_amplicon>AGCAACTCGTCTTCTGTCTCTCCGCCACGTCTTCCACCACCATAAACCGATTCGAAGCCAGACTCGGCTCTCGAGGTACCTGGCCGTCGGAACACCGAGCCATGAGAATCTCCGGCGTTCTGAAATTTTTTCAAATAAATTTTGAATGAGAAACTTCAGATTTCTCATACCGCGAAGGACTGCGCACTCTGCAACGTCGCCTTCGGATCTCGACAAAAATCGCAATTCGATCCGCACGGCCGACAATCGGTGTCGTCGAAGAACTCGGCGATTGCMACGTGGCGGCATCTGAAAATTTGAAATTTACAGATGTACCTAGGTTATAGACTCACTTGGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35804</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>253376</contig_pos>
        <strand>+</strand>
        <context>CCTGGAAATT[C/T]GGAATTTTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCATTGCGGCTTTCTCGCCCTCGGCATTCTTTTTTTCGGCCTGGAAATT</left_flank>
        <right_flank>GGAATTTTCGATTTTTCAAGGTTTTTTCTCAGTTTTCATTGTATTTTTCA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTTGGCCTCCTCGTGCTCCATACGCTCCATGGCATCTTTAGAAGACGTATTCGAGGAAAGCAACTCGTCTTCTGTCTCTCCGCCACGTCTTCCACCACCATAAACCGATTCGAAGCCAGACTCGGCTCTCGAGGTACCTGGCCGTCGGAACACCGAGCCATGAGAATCTCCGGCGTTCTGAAATTTTTTCAAATAAATTTTGAATGAGAAACTTCAGATTTCTCATACCGCGAAGGACTGCGCACTCTGCAACGTCGCCTTCGGATCTCGACAAAAATCGCAATTCGATCCGCACGGCCGACAATCGGTGTCGTCGAAGAACTCGGCGATTGCAACGTGGCGGCATCTGAAAATTTGAAATTTACAGATGTACCTAGGTTATAGACTCACTTGGCACTCTCACAGTACTCCAACATTTTCGCTAGTCCCACTTGTATCGATTTGATCTGCATTGCGGCTTTCTCGCCCTCGGCATTCTTTTTTTCGGCCTGGAAATTCGGAATTTTCGATTTTTCAAGGTTTTTTCTCAGTTTTCATTGTATTTTTCACTGAAAATCGCGAAAAATCAGTCCAAAAAGCATTAAAAAGGCGATATCGTGTCGAGACCCAAACAATTTTAAAAGCATGTTCCTTTAAACTACGGTAGTCTTGAGAAAATCATTTTTGGGCCTAAATCATGCCATTTTTTCTTATTTTTGCTGATTTTCGCCGATTTTGTTGGTTCTAGCGTGATTCTAATCGATTTCAGTCAAAAGTCGAAGAAAAATCCCAAAAATCAGCAGAAAAATCGGGAAAAATAGGCAAAAATTGAAAAATTTTGCGATTTCGTGTCGATACCCTGCCACTCGGAAGCATGTTCCTTTAAAATTACCGTAGCCTAGCGGAAAACATTTTTGAATTATGCTTTTCTTTCGCATTTTTCGCCGATTTTCGTCAGTTTTTTGTTACTAATATGATTTTAGACTAAATTTCGTTAAATTTTGGCGAAAATTGAGGGA</canonical>
            <polymorphic>CTCTTGGCCTCCTCGTGCTCCATACGCTCCATGGCATCTTTAGAAGACGTATTCGAGGAAAGCAACTCGTCTTCTGTCTCTCCGCCACGTCTTCCACCACCATAAACCGATTCGAAGCCAGACTCGGCTCTCGAGGTACCTGGCCGTCGGAACACCGAGCCATGAGAATCTCCGGCGTTCTGAAATTTTTTCAAATAAATTTTGAATGAGAAACTTCAGATTTCTCATACCGCGAAGGACTGCGCACTCTGCAACGTCGCCTTCGGATCTCGACAAAAATCGCAATTCGATCCGCACGGCCGACAATCGGTGTCGTCGAAGAACTCGGCGATTGCAACGTGGCGGCATCTGAAAATTTGAAATTTACAGATGTACCTAGGTTATAGACTCACTTGGCACTCTCACAGTACTCCAACATTTTCGCTAGTCCCACTTGTATCGATTTGATCTGCATTGCGGCTTTCTCGCCCTCGGCATTCTTTTTTTCGGCCTGGAAATTYGGAATTTTCGATTTTTCAAGGTTTTTTCTCAGTTTTCATTGTATTTTTCACTGAAAATCGCGAAAAATCAGTCCAAAAAGCATTAAAAAGGCGATATCGTGTCGAGACCCAAACAATTTTAAAAGCATGTTCCTTTAAACTACGGTAGTCTTGAGAAAATCATTTTTGGGCCTAAATCATGCCATTTTTTCTTATTTTTGCTGATTTTCGCCGATTTTGTTGGTTCTAGCGTGATTCTAATCGATTTCAGTCAAAAGTCGAAGAAAAATCCCAAAAATCAGCAGAAAAATCGGGAAAAATAGGCAAAAATTGAAAAATTTTGCGATTTCGTGTCGATACCCTGCCACTCGGAAGCATGTTCCTTTAAAATTACCGTAGCCTAGCGGAAAACATTTTTGAATTATGCTTTTCTTTCGCATTTTTCGCCGATTTTCGTCAGTTTTTTGTTACTAATATGATTTTAGACTAAATTTCGTTAAATTTTGGCGAAAATTGAGGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>313 183 156 153 135 22 14 10 7 7</canonical_bands>
                <polymorphic_bands>313 183 156 153 142 22 14 10 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>349 151 150 149 85 47 37 32</canonical_bands>
                <polymorphic_bands>500 150 149 85 47 37 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATAGACTCACTTGGCACTCTC</pcr_primer_p1>
		<pcr_primer_p2>GAACATGCTTTTAAAATTGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTATAGACTCACTTGGCACTCTCACAGTACTCCAACATTTTCGCTAGTCCCACTTGTATCGATTTGATCTGCATTGCGGCTTTCTCGCCCTCGGCATTCTTTTTTTCGGCCTGGAAATTCGGAATTTTCGATTTTTCAAGGTTTTTTCTCAGTTTTCATTGTATTTTTCACTGAAAATCGCGAAAAATCAGTCCAAAAAGCATTAAAAAGGCGATATCGTGTCGAGACCCAAACAATTTTAAAAGCATGTTC</canonical_amplicon>
		<polymorphic_amplicon>TTATAGACTCACTTGGCACTCTCACAGTACTCCAACATTTTCGCTAGTCCCACTTGTATCGATTTGATCTGCATTGCGGCTTTCTCGCCCTCGGCATTCTTTTTTTCGGCCTGGAAATTYGGAATTTTCGATTTTTCAAGGTTTTTTCTCAGTTTTCATTGTATTTTTCACTGAAAATCGCGAAAAATCAGTCCAAAAAGCATTAAAAAGGCGATATCGTGTCGAGACCCAAACAATTTTAAAAGCATGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35805</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>253388</contig_pos>
        <strand></strand>
        <context>GAATTTTCGA[T/A]TTTTCAAGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTCTCGCCCTCGGCATTCTTTTTTTCGGCCTGGAAATTCGGAATTTTCGA</left_flank>
        <right_flank>TTTTCAAGGTTTTTTCTCAGTTTTCATTGTATTTTTCACTGAAAATCGCG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTGCTCCATACGCTCCATGGCATCTTTAGAAGACGTATTCGAGGAAAGCAACTCGTCTTCTGTCTCTCCGCCACGTCTTCCACCACCATAAACCGATTCGAAGCCAGACTCGGCTCTCGAGGTACCTGGCCGTCGGAACACCGAGCCATGAGAATCTCCGGCGTTCTGAAATTTTTTCAAATAAATTTTGAATGAGAAACTTCAGATTTCTCATACCGCGAAGGACTGCGCACTCTGCAACGTCGCCTTCGGATCTCGACAAAAATCGCAATTCGATCCGCACGGCCGACAATCGGTGTCGTCGAAGAACTCGGCGATTGCAACGTGGCGGCATCTGAAAATTTGAAATTTACAGATGTACCTAGGTTATAGACTCACTTGGCACTCTCACAGTACTCCAACATTTTCGCTAGTCCCACTTGTATCGATTTGATCTGCATTGCGGCTTTCTCGCCCTCGGCATTCTTTTTTTCGGCCTGGAAATTCGGAATTTTCGATTTTTCAAGGTTTTTTCTCAGTTTTCATTGTATTTTTCACTGAAAATCGCGAAAAATCAGTCCAAAAAGCATTAAAAAGGCGATATCGTGTCGAGACCCAAACAATTTTAAAAGCATGTTCCTTTAAACTACGGTAGTCTTGAGAAAATCATTTTTGGGCCTAAATCATGCCATTTTTTCTTATTTTTGCTGATTTTCGCCGATTTTGTTGGTTCTAGCGTGATTCTAATCGATTTCAGTCAAAAGTCGAAGAAAAATCCCAAAAATCAGCAGAAAAATCGGGAAAAATAGGCAAAAATTGAAAAATTTTGCGATTTCGTGTCGATACCCTGCCACTCGGAAGCATGTTCCTTTAAAATTACCGTAGCCTAGCGGAAAACATTTTTGAATTATGCTTTTCTTTCGCATTTTTCGCCGATTTTCGTCAGTTTTTTGTTACTAATATGATTTTAGACTAAATTTCGTTAAATTTTGGCGAAAATTGAGGGAAAATCGAGAACA</canonical>
            <polymorphic>TCGTGCTCCATACGCTCCATGGCATCTTTAGAAGACGTATTCGAGGAAAGCAACTCGTCTTCTGTCTCTCCGCCACGTCTTCCACCACCATAAACCGATTCGAAGCCAGACTCGGCTCTCGAGGTACCTGGCCGTCGGAACACCGAGCCATGAGAATCTCCGGCGTTCTGAAATTTTTTCAAATAAATTTTGAATGAGAAACTTCAGATTTCTCATACCGCGAAGGACTGCGCACTCTGCAACGTCGCCTTCGGATCTCGACAAAAATCGCAATTCGATCCGCACGGCCGACAATCGGTGTCGTCGAAGAACTCGGCGATTGCAACGTGGCGGCATCTGAAAATTTGAAATTTACAGATGTACCTAGGTTATAGACTCACTTGGCACTCTCACAGTACTCCAACATTTTCGCTAGTCCCACTTGTATCGATTTGATCTGCATTGCGGCTTTCTCGCCCTCGGCATTCTTTTTTTCGGCCTGGAAATTCGGAATTTTCGAWTTTTCAAGGTTTTTTCTCAGTTTTCATTGTATTTTTCACTGAAAATCGCGAAAAATCAGTCCAAAAAGCATTAAAAAGGCGATATCGTGTCGAGACCCAAACAATTTTAAAAGCATGTTCCTTTAAACTACGGTAGTCTTGAGAAAATCATTTTTGGGCCTAAATCATGCCATTTTTTCTTATTTTTGCTGATTTTCGCCGATTTTGTTGGTTCTAGCGTGATTCTAATCGATTTCAGTCAAAAGTCGAAGAAAAATCCCAAAAATCAGCAGAAAAATCGGGAAAAATAGGCAAAAATTGAAAAATTTTGCGATTTCGTGTCGATACCCTGCCACTCGGAAGCATGTTCCTTTAAAATTACCGTAGCCTAGCGGAAAACATTTTTGAATTATGCTTTTCTTTCGCATTTTTCGCCGATTTTCGTCAGTTTTTTGTTACTAATATGATTTTAGACTAAATTTCGTTAAATTTTGGCGAAAATTGAGGGAAAATCGAGAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATAGACTCACTTGGCACTCTC</pcr_primer_p1>
		<pcr_primer_p2>GAACATGCTTTTAAAATTGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTATAGACTCACTTGGCACTCTCACAGTACTCCAACATTTTCGCTAGTCCCACTTGTATCGATTTGATCTGCATTGCGGCTTTCTCGCCCTCGGCATTCTTTTTTTCGGCCTGGAAATTCGGAATTTTCGATTTTTCAAGGTTTTTTCTCAGTTTTCATTGTATTTTTCACTGAAAATCGCGAAAAATCAGTCCAAAAAGCATTAAAAAGGCGATATCGTGTCGAGACCCAAACAATTTTAAAAGCATGTTC</canonical_amplicon>
		<polymorphic_amplicon>TTATAGACTCACTTGGCACTCTCACAGTACTCCAACATTTTCGCTAGTCCCACTTGTATCGATTTGATCTGCATTGCGGCTTTCTCGCCCTCGGCATTCTTTTTTTCGGCCTGGAAATTCGGAATTTTCGAWTTTTCAAGGTTTTTTCTCAGTTTTCATTGTATTTTTCACTGAAAATCGCGAAAAATCAGTCCAAAAAGCATTAAAAAGGCGATATCGTGTCGAGACCCAAACAATTTTAAAAGCATGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35806</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>267106</contig_pos>
        <strand></strand>
        <context>TCTCGAATTT[T/G]GGGATGTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CATCTATTCGATTAATAATGCAGGATGATCCACGGATTGTTCTCGAATTT</left_flank>
        <right_flank>GGGATGTTTCCATTGTGTTCGAGTTGGTAATGAGCAGAGACTACGAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAATTTTTTTTCCGTTTCCGCTGTGAAAAAATGGCGGGTTTTCCGGAAAACGGAAACGGAAACGGAAATTCCTCCCATCACTGGTACCTACATTTTCCACTCAAGACCCGGCCTTATGTACATATTTACACAAAATCAATAGGGCCCTCTAAGGACTTTATATTTTCATTTTCCATGGTTTTTTGTATGATGTTCTTCCTCACTTTGTCTGCTATCATTATTCTATTCTATGAATTTCTTTTTTCTCGAAATATGATCAACCAGAGATTTCCACTTGTCTACATGAAGATCTCTGTTTAAAGGTTCTGAAAAATATGGGCTACATAGAAGTGTGAGTTTATCTCCTCAAAAAGTTTGTATCCATTGCATTTTTTCATTTCAGAATTGTCTTCTCATTCATCTCAAAAAAGGCATTTTCAATGGTGAAGGCTCTTCATTTACCAATCACATCTATTCGATTAATAATGCAGGATGATCCACGGATTGTTCTCGAATTTTGGGATGTTTCCATTGTGTTCGAGTTGGTAATGAGCAGAGACTACGAAAAAATGATGAGCTTGAATGACCTTCTAGTTAATGTGAATGTATTTAGAGGGAACCCAGAGAAAAAACTAGCATTAATAATGTCAAATAGGAGAAAGACTTTAGGAGAATGGATTCATCATCTCTGTTCAATATCCGATAGAGATGTACTTTATGAAGCCGTTTTTTATTTTGAAAATCTACAATTCGACATTCAATCACTCCGGAATATTTTTCCCAAACTTCGAGAAATCTGTATATACTTCTCGCGAGATGAAACGGACCAGTGCGATGTTCTTTACGCTCAAACCATTTTGAAAGCGTTTCTGCCAATGTTCAGAGCGTGAAGTTGAATCGTGTCCCTCTCCAAGAGAATCTTTCCATTCAACATATCGGAATGGCAAATTTAGAAGAGTTCAAGTTATTATCTCGAAGCACTATGAATGTTGATTGTCTTTTCACATGGAATTTCGAAA</canonical>
            <polymorphic>TTAAATTTTTTTTCCGTTTCCGCTGTGAAAAAATGGCGGGTTTTCCGGAAAACGGAAACGGAAACGGAAATTCCTCCCATCACTGGTACCTACATTTTCCACTCAAGACCCGGCCTTATGTACATATTTACACAAAATCAATAGGGCCCTCTAAGGACTTTATATTTTCATTTTCCATGGTTTTTTGTATGATGTTCTTCCTCACTTTGTCTGCTATCATTATTCTATTCTATGAATTTCTTTTTTCTCGAAATATGATCAACCAGAGATTTCCACTTGTCTACATGAAGATCTCTGTTTAAAGGTTCTGAAAAATATGGGCTACATAGAAGTGTGAGTTTATCTCCTCAAAAAGTTTGTATCCATTGCATTTTTTCATTTCAGAATTGTCTTCTCATTCATCTCAAAAAAGGCATTTTCAATGGTGAAGGCTCTTCATTTACCAATCACATCTATTCGATTAATAATGCAGGATGATCCACGGATTGTTCTCGAATTTKGGGATGTTTCCATTGTGTTCGAGTTGGTAATGAGCAGAGACTACGAAAAAATGATGAGCTTGAATGACCTTCTAGTTAATGTGAATGTATTTAGAGGGAACCCAGAGAAAAAACTAGCATTAATAATGTCAAATAGGAGAAAGACTTTAGGAGAATGGATTCATCATCTCTGTTCAATATCCGATAGAGATGTACTTTATGAAGCCGTTTTTTATTTTGAAAATCTACAATTCGACATTCAATCACTCCGGAATATTTTTCCCAAACTTCGAGAAATCTGTATATACTTCTCGCGAGATGAAACGGACCAGTGCGATGTTCTTTACGCTCAAACCATTTTGAAAGCGTTTCTGCCAATGTTCAGAGCGTGAAGTTGAATCGTGTCCCTCTCCAAGAGAATCTTTCCATTCAACATATCGGAATGGCAAATTTAGAAGAGTTCAAGTTATTATCTCGAAGCACTATGAATGTTGATTGTCTTTTCACATGGAATTTCGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGTTTGTATCCATTGCATTT</pcr_primer_p1>
		<pcr_primer_p2>TTCCCTCTAAATACATTCACATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAGTTTGTATCCATTGCATTTTTTCATTTCAGAATTGTCTTCTCATTCATCTCAAAAAAGGCATTTTCAATGGTGAAGGCTCTTCATTTACCAATCACATCTATTCGATTAATAATGCAGGATGATCCACGGATTGTTCTCGAATTTTGGGATGTTTCCATTGTGTTCGAGTTGGTAATGAGCAGAGACTACGAAAAAATGATGAGCTTGAATGACCTTCTAGTTAATGTGAATGTATTTAGAGGGAA</canonical_amplicon>
		<polymorphic_amplicon>AAAGTTTGTATCCATTGCATTTTTTCATTTCAGAATTGTCTTCTCATTCATCTCAAAAAAGGCATTTTCAATGGTGAAGGCTCTTCATTTACCAATCACATCTATTCGATTAATAATGCAGGATGATCCACGGATTGTTCTCGAATTTKGGGATGTTTCCATTGTGTTCGAGTTGGTAATGAGCAGAGACTACGAAAAAATGATGAGCTTGAATGACCTTCTAGTTAATGTGAATGTATTTAGAGGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35807</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>267167</contig_pos>
        <strand></strand>
        <context>ATGATGAGCT[T/C]GAATGACCTY</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CATTGTGTTCGAGTTGGTAATGAGCAGAGACTACGAAAAAATGATGAGCT</left_flank>
        <right_flank>GAATGACCTTCTAGTTAATGTGAATGTATTTAGAGGGAACCCAGAGAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACGGAAATTCCTCCCATCACTGGTACCTACATTTTCCACTCAAGACCCGGCCTTATGTACATATTTACACAAAATCAATAGGGCCCTCTAAGGACTTTATATTTTCATTTTCCATGGTTTTTTGTATGATGTTCTTCCTCACTTTGTCTGCTATCATTATTCTATTCTATGAATTTCTTTTTTCTCGAAATATGATCAACCAGAGATTTCCACTTGTCTACATGAAGATCTCTGTTTAAAGGTTCTGAAAAATATGGGCTACATAGAAGTGTGAGTTTATCTCCTCAAAAAGTTTGTATCCATTGCATTTTTTCATTTCAGAATTGTCTTCTCATTCATCTCAAAAAAGGCATTTTCAATGGTGAAGGCTCTTCATTTACCAATCACATCTATTCGATTAATAATGCAGGATGATCCACGGATTGTTCTCGAATTTTGGGATGTTTCCATTGTGTTCGAGTTGGTAATGAGCAGAGACTACGAAAAAATGATGAGCTTGAATGACCTTCTAGTTAATGTGAATGTATTTAGAGGGAACCCAGAGAAAAAACTAGCATTAATAATGTCAAATAGGAGAAAGACTTTAGGAGAATGGATTCATCATCTCTGTTCAATATCCGATAGAGATGTACTTTATGAAGCCGTTTTTTATTTTGAAAATCTACAATTCGACATTCAATCACTCCGGAATATTTTTCCCAAACTTCGAGAAATCTGTATATACTTCTCGCGAGATGAAACGGACCAGTGCGATGTTCTTTACGCTCAAACCATTTTGAAAGCGTTTCTGCCAATGTTCAGAGCGTGAAGTTGAATCGTGTCCCTCTCCAAGAGAATCTTTCCATTCAACATATCGGAATGGCAAATTTAGAAGAGTTCAAGTTATTATCTCGAAGCACTATGAATGTTGATTGTCTTTTCACATGGAATTTCGAAAGTTGTATTGTAAATACAGTTCAAATGTCGCTCCGAGACTGGAATCGTTTTTTCAAATTGTG</canonical>
            <polymorphic>AAACGGAAATTCCTCCCATCACTGGTACCTACATTTTCCACTCAAGACCCGGCCTTATGTACATATTTACACAAAATCAATAGGGCCCTCTAAGGACTTTATATTTTCATTTTCCATGGTTTTTTGTATGATGTTCTTCCTCACTTTGTCTGCTATCATTATTCTATTCTATGAATTTCTTTTTTCTCGAAATATGATCAACCAGAGATTTCCACTTGTCTACATGAAGATCTCTGTTTAAAGGTTCTGAAAAATATGGGCTACATAGAAGTGTGAGTTTATCTCCTCAAAAAGTTTGTATCCATTGCATTTTTTCATTTCAGAATTGTCTTCTCATTCATCTCAAAAAAGGCATTTTCAATGGTGAAGGCTCTTCATTTACCAATCACATCTATTCGATTAATAATGCAGGATGATCCACGGATTGTTCTCGAATTTTGGGATGTTTCCATTGTGTTCGAGTTGGTAATGAGCAGAGACTACGAAAAAATGATGAGCTYGAATGACCTTCTAGTTAATGTGAATGTATTTAGAGGGAACCCAGAGAAAAAACTAGCATTAATAATGTCAAATAGGAGAAAGACTTTAGGAGAATGGATTCATCATCTCTGTTCAATATCCGATAGAGATGTACTTTATGAAGCCGTTTTTTATTTTGAAAATCTACAATTCGACATTCAATCACTCCGGAATATTTTTCCCAAACTTCGAGAAATCTGTATATACTTCTCGCGAGATGAAACGGACCAGTGCGATGTTCTTTACGCTCAAACCATTTTGAAAGCGTTTCTGCCAATGTTCAGAGCGTGAAGTTGAATCGTGTCCCTCTCCAAGAGAATCTTTCCATTCAACATATCGGAATGGCAAATTTAGAAGAGTTCAAGTTATTATCTCGAAGCACTATGAATGTTGATTGTCTTTTCACATGGAATTTCGAAAGTTGTATTGTAAATACAGTTCAAATGTCGCTCCGAGACTGGAATCGTTTTTTCAAATTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCTTCATTTACCAATCACAT</pcr_primer_p1>
		<pcr_primer_p2>GGATATTGAACAGAGATGATGAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCTCTTCATTTACCAATCACATCTATTCGATTAATAATGCAGGATGATCCACGGATTGTTCTCGAATTTTGGGATGTTTCCATTGTGTTCGAGTTGGTAATGAGCAGAGACTACGAAAAAATGATGAGCTTGAATGACCTTCTAGTTAATGTGAATGTATTTAGAGGGAACCCAGAGAAAAAACTAGCATTAATAATGTCAAATAGGAGAAAGACTTTAGGAGAATGGATTCATCATCTCTGTTCAATATCC</canonical_amplicon>
		<polymorphic_amplicon>GCTCTTCATTTACCAATCACATCTATTCGATTAATAATGCAGGATGATCCACGGATTGTTCTCGAATTTTGGGATGTTTCCATTGTGTTCGAGTTGGTAATGAGCAGAGACTACGAAAAAATGATGAGCTYGAATGACCTTCTAGTTAATGTGAATGTATTTAGAGGGAACCCAGAGAAAAAACTAGCATTAATAATGTCAAATAGGAGAAAGACTTTAGGAGAATGGATTCATCATCTCTGTTCAATATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35808</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>267177</contig_pos>
        <strand></strand>
        <context>YGAATGACCT[T/C]CYAGTTAATG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAGTTGGTAATGAGCAGAGACTACGAAAAAATGATGAGCTTGAATGACCT</left_flank>
        <right_flank>CTAGTTAATGTGAATGTATTTAGAGGGAACCCAGAGAAAAAACTAGCATT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTCCCATCACTGGTACCTACATTTTCCACTCAAGACCCGGCCTTATGTACATATTTACACAAAATCAATAGGGCCCTCTAAGGACTTTATATTTTCATTTTCCATGGTTTTTTGTATGATGTTCTTCCTCACTTTGTCTGCTATCATTATTCTATTCTATGAATTTCTTTTTTCTCGAAATATGATCAACCAGAGATTTCCACTTGTCTACATGAAGATCTCTGTTTAAAGGTTCTGAAAAATATGGGCTACATAGAAGTGTGAGTTTATCTCCTCAAAAAGTTTGTATCCATTGCATTTTTTCATTTCAGAATTGTCTTCTCATTCATCTCAAAAAAGGCATTTTCAATGGTGAAGGCTCTTCATTTACCAATCACATCTATTCGATTAATAATGCAGGATGATCCACGGATTGTTCTCGAATTTTGGGATGTTTCCATTGTGTTCGAGTTGGTAATGAGCAGAGACTACGAAAAAATGATGAGCTTGAATGACCTTCTAGTTAATGTGAATGTATTTAGAGGGAACCCAGAGAAAAAACTAGCATTAATAATGTCAAATAGGAGAAAGACTTTAGGAGAATGGATTCATCATCTCTGTTCAATATCCGATAGAGATGTACTTTATGAAGCCGTTTTTTATTTTGAAAATCTACAATTCGACATTCAATCACTCCGGAATATTTTTCCCAAACTTCGAGAAATCTGTATATACTTCTCGCGAGATGAAACGGACCAGTGCGATGTTCTTTACGCTCAAACCATTTTGAAAGCGTTTCTGCCAATGTTCAGAGCGTGAAGTTGAATCGTGTCCCTCTCCAAGAGAATCTTTCCATTCAACATATCGGAATGGCAAATTTAGAAGAGTTCAAGTTATTATCTCGAAGCACTATGAATGTTGATTGTCTTTTCACATGGAATTTCGAAAGTTGTATTGTAAATACAGTTCAAATGTCGCTCCGAGACTGGAATCGTTTTTTCAAATTGTGGATTAAAGGA</canonical>
            <polymorphic>TCCTCCCATCACTGGTACCTACATTTTCCACTCAAGACCCGGCCTTATGTACATATTTACACAAAATCAATAGGGCCCTCTAAGGACTTTATATTTTCATTTTCCATGGTTTTTTGTATGATGTTCTTCCTCACTTTGTCTGCTATCATTATTCTATTCTATGAATTTCTTTTTTCTCGAAATATGATCAACCAGAGATTTCCACTTGTCTACATGAAGATCTCTGTTTAAAGGTTCTGAAAAATATGGGCTACATAGAAGTGTGAGTTTATCTCCTCAAAAAGTTTGTATCCATTGCATTTTTTCATTTCAGAATTGTCTTCTCATTCATCTCAAAAAAGGCATTTTCAATGGTGAAGGCTCTTCATTTACCAATCACATCTATTCGATTAATAATGCAGGATGATCCACGGATTGTTCTCGAATTTTGGGATGTTTCCATTGTGTTCGAGTTGGTAATGAGCAGAGACTACGAAAAAATGATGAGCTTGAATGACCTYCTAGTTAATGTGAATGTATTTAGAGGGAACCCAGAGAAAAAACTAGCATTAATAATGTCAAATAGGAGAAAGACTTTAGGAGAATGGATTCATCATCTCTGTTCAATATCCGATAGAGATGTACTTTATGAAGCCGTTTTTTATTTTGAAAATCTACAATTCGACATTCAATCACTCCGGAATATTTTTCCCAAACTTCGAGAAATCTGTATATACTTCTCGCGAGATGAAACGGACCAGTGCGATGTTCTTTACGCTCAAACCATTTTGAAAGCGTTTCTGCCAATGTTCAGAGCGTGAAGTTGAATCGTGTCCCTCTCCAAGAGAATCTTTCCATTCAACATATCGGAATGGCAAATTTAGAAGAGTTCAAGTTATTATCTCGAAGCACTATGAATGTTGATTGTCTTTTCACATGGAATTTCGAAAGTTGTATTGTAAATACAGTTCAAATGTCGCTCCGAGACTGGAATCGTTTTTTCAAATTGTGGATTAAAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCTTCATTTACCAATCACAT</pcr_primer_p1>
		<pcr_primer_p2>GGATATTGAACAGAGATGATGAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCTCTTCATTTACCAATCACATCTATTCGATTAATAATGCAGGATGATCCACGGATTGTTCTCGAATTTTGGGATGTTTCCATTGTGTTCGAGTTGGTAATGAGCAGAGACTACGAAAAAATGATGAGCTTGAATGACCTTCTAGTTAATGTGAATGTATTTAGAGGGAACCCAGAGAAAAAACTAGCATTAATAATGTCAAATAGGAGAAAGACTTTAGGAGAATGGATTCATCATCTCTGTTCAATATCC</canonical_amplicon>
		<polymorphic_amplicon>GCTCTTCATTTACCAATCACATCTATTCGATTAATAATGCAGGATGATCCACGGATTGTTCTCGAATTTTGGGATGTTTCCATTGTGTTCGAGTTGGTAATGAGCAGAGACTACGAAAAAATGATGAGCTTGAATGACCTYCTAGTTAATGTGAATGTATTTAGAGGGAACCCAGAGAAAAAACTAGCATTAATAATGTCAAATAGGAGAAAGACTTTAGGAGAATGGATTCATCATCTCTGTTCAATATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35809</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>267179</contig_pos>
        <strand></strand>
        <context>AATGACCTYC[T/C]AGTTAATGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTTGGTAATGAGCAGAGACTACGAAAAAATGATGAGCTTGAATGACCTTC</left_flank>
        <right_flank>AGTTAATGTGAATGTATTTAGAGGGAACCCAGAGAAAAAACTAGCATTAA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCCATCACTGGTACCTACATTTTCCACTCAAGACCCGGCCTTATGTACATATTTACACAAAATCAATAGGGCCCTCTAAGGACTTTATATTTTCATTTTCCATGGTTTTTTGTATGATGTTCTTCCTCACTTTGTCTGCTATCATTATTCTATTCTATGAATTTCTTTTTTCTCGAAATATGATCAACCAGAGATTTCCACTTGTCTACATGAAGATCTCTGTTTAAAGGTTCTGAAAAATATGGGCTACATAGAAGTGTGAGTTTATCTCCTCAAAAAGTTTGTATCCATTGCATTTTTTCATTTCAGAATTGTCTTCTCATTCATCTCAAAAAAGGCATTTTCAATGGTGAAGGCTCTTCATTTACCAATCACATCTATTCGATTAATAATGCAGGATGATCCACGGATTGTTCTCGAATTTTGGGATGTTTCCATTGTGTTCGAGTTGGTAATGAGCAGAGACTACGAAAAAATGATGAGCTTGAATGACCTTCTAGTTAATGTGAATGTATTTAGAGGGAACCCAGAGAAAAAACTAGCATTAATAATGTCAAATAGGAGAAAGACTTTAGGAGAATGGATTCATCATCTCTGTTCAATATCCGATAGAGATGTACTTTATGAAGCCGTTTTTTATTTTGAAAATCTACAATTCGACATTCAATCACTCCGGAATATTTTTCCCAAACTTCGAGAAATCTGTATATACTTCTCGCGAGATGAAACGGACCAGTGCGATGTTCTTTACGCTCAAACCATTTTGAAAGCGTTTCTGCCAATGTTCAGAGCGTGAAGTTGAATCGTGTCCCTCTCCAAGAGAATCTTTCCATTCAACATATCGGAATGGCAAATTTAGAAGAGTTCAAGTTATTATCTCGAAGCACTATGAATGTTGATTGTCTTTTCACATGGAATTTCGAAAGTTGTATTGTAAATACAGTTCAAATGTCGCTCCGAGACTGGAATCGTTTTTTCAAATTGTGGATTAAAGGATC</canonical>
            <polymorphic>CTCCCATCACTGGTACCTACATTTTCCACTCAAGACCCGGCCTTATGTACATATTTACACAAAATCAATAGGGCCCTCTAAGGACTTTATATTTTCATTTTCCATGGTTTTTTGTATGATGTTCTTCCTCACTTTGTCTGCTATCATTATTCTATTCTATGAATTTCTTTTTTCTCGAAATATGATCAACCAGAGATTTCCACTTGTCTACATGAAGATCTCTGTTTAAAGGTTCTGAAAAATATGGGCTACATAGAAGTGTGAGTTTATCTCCTCAAAAAGTTTGTATCCATTGCATTTTTTCATTTCAGAATTGTCTTCTCATTCATCTCAAAAAAGGCATTTTCAATGGTGAAGGCTCTTCATTTACCAATCACATCTATTCGATTAATAATGCAGGATGATCCACGGATTGTTCTCGAATTTTGGGATGTTTCCATTGTGTTCGAGTTGGTAATGAGCAGAGACTACGAAAAAATGATGAGCTTGAATGACCTTCYAGTTAATGTGAATGTATTTAGAGGGAACCCAGAGAAAAAACTAGCATTAATAATGTCAAATAGGAGAAAGACTTTAGGAGAATGGATTCATCATCTCTGTTCAATATCCGATAGAGATGTACTTTATGAAGCCGTTTTTTATTTTGAAAATCTACAATTCGACATTCAATCACTCCGGAATATTTTTCCCAAACTTCGAGAAATCTGTATATACTTCTCGCGAGATGAAACGGACCAGTGCGATGTTCTTTACGCTCAAACCATTTTGAAAGCGTTTCTGCCAATGTTCAGAGCGTGAAGTTGAATCGTGTCCCTCTCCAAGAGAATCTTTCCATTCAACATATCGGAATGGCAAATTTAGAAGAGTTCAAGTTATTATCTCGAAGCACTATGAATGTTGATTGTCTTTTCACATGGAATTTCGAAAGTTGTATTGTAAATACAGTTCAAATGTCGCTCCGAGACTGGAATCGTTTTTTCAAATTGTGGATTAAAGGATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 459 42</canonical_bands>
                <polymorphic_bands>541 459</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTCTTCATTTACCAATCACAT</pcr_primer_p1>
		<pcr_primer_p2>GGATATTGAACAGAGATGATGAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCTCTTCATTTACCAATCACATCTATTCGATTAATAATGCAGGATGATCCACGGATTGTTCTCGAATTTTGGGATGTTTCCATTGTGTTCGAGTTGGTAATGAGCAGAGACTACGAAAAAATGATGAGCTTGAATGACCTTCTAGTTAATGTGAATGTATTTAGAGGGAACCCAGAGAAAAAACTAGCATTAATAATGTCAAATAGGAGAAAGACTTTAGGAGAATGGATTCATCATCTCTGTTCAATATCC</canonical_amplicon>
		<polymorphic_amplicon>GCTCTTCATTTACCAATCACATCTATTCGATTAATAATGCAGGATGATCCACGGATTGTTCTCGAATTTTGGGATGTTTCCATTGTGTTCGAGTTGGTAATGAGCAGAGACTACGAAAAAATGATGAGCTTGAATGACCTTCYAGTTAATGTGAATGTATTTAGAGGGAACCCAGAGAAAAAACTAGCATTAATAATGTCAAATAGGAGAAAGACTTTAGGAGAATGGATTCATCATCTCTGTTCAATATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35810</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>267208</contig_pos>
        <strand></strand>
        <context>TAGAGGGAAC[C/G]CAGAGAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGATGAGCTTGAATGACCTTCTAGTTAATGTGAATGTATTTAGAGGGAAC</left_flank>
        <right_flank>CAGAGAAAAAACTAGCATTAATAATGTCAAATAGGAGAAAGACTTTAGGA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAGACCCGGCCTTATGTACATATTTACACAAAATCAATAGGGCCCTCTAAGGACTTTATATTTTCATTTTCCATGGTTTTTTGTATGATGTTCTTCCTCACTTTGTCTGCTATCATTATTCTATTCTATGAATTTCTTTTTTCTCGAAATATGATCAACCAGAGATTTCCACTTGTCTACATGAAGATCTCTGTTTAAAGGTTCTGAAAAATATGGGCTACATAGAAGTGTGAGTTTATCTCCTCAAAAAGTTTGTATCCATTGCATTTTTTCATTTCAGAATTGTCTTCTCATTCATCTCAAAAAAGGCATTTTCAATGGTGAAGGCTCTTCATTTACCAATCACATCTATTCGATTAATAATGCAGGATGATCCACGGATTGTTCTCGAATTTTGGGATGTTTCCATTGTGTTCGAGTTGGTAATGAGCAGAGACTACGAAAAAATGATGAGCTTGAATGACCTTCTAGTTAATGTGAATGTATTTAGAGGGAACCCAGAGAAAAAACTAGCATTAATAATGTCAAATAGGAGAAAGACTTTAGGAGAATGGATTCATCATCTCTGTTCAATATCCGATAGAGATGTACTTTATGAAGCCGTTTTTTATTTTGAAAATCTACAATTCGACATTCAATCACTCCGGAATATTTTTCCCAAACTTCGAGAAATCTGTATATACTTCTCGCGAGATGAAACGGACCAGTGCGATGTTCTTTACGCTCAAACCATTTTGAAAGCGTTTCTGCCAATGTTCAGAGCGTGAAGTTGAATCGTGTCCCTCTCCAAGAGAATCTTTCCATTCAACATATCGGAATGGCAAATTTAGAAGAGTTCAAGTTATTATCTCGAAGCACTATGAATGTTGATTGTCTTTTCACATGGAATTTCGAAAGTTGTATTGTAAATACAGTTCAAATGTCGCTCCGAGACTGGAATCGTTTTTTCAAATTGTGGATTAAAGGATCCAATCCAAGGTTGAAGGAATTGTACATTT</canonical>
            <polymorphic>TCAAGACCCGGCCTTATGTACATATTTACACAAAATCAATAGGGCCCTCTAAGGACTTTATATTTTCATTTTCCATGGTTTTTTGTATGATGTTCTTCCTCACTTTGTCTGCTATCATTATTCTATTCTATGAATTTCTTTTTTCTCGAAATATGATCAACCAGAGATTTCCACTTGTCTACATGAAGATCTCTGTTTAAAGGTTCTGAAAAATATGGGCTACATAGAAGTGTGAGTTTATCTCCTCAAAAAGTTTGTATCCATTGCATTTTTTCATTTCAGAATTGTCTTCTCATTCATCTCAAAAAAGGCATTTTCAATGGTGAAGGCTCTTCATTTACCAATCACATCTATTCGATTAATAATGCAGGATGATCCACGGATTGTTCTCGAATTTTGGGATGTTTCCATTGTGTTCGAGTTGGTAATGAGCAGAGACTACGAAAAAATGATGAGCTTGAATGACCTTCTAGTTAATGTGAATGTATTTAGAGGGAACSCAGAGAAAAAACTAGCATTAATAATGTCAAATAGGAGAAAGACTTTAGGAGAATGGATTCATCATCTCTGTTCAATATCCGATAGAGATGTACTTTATGAAGCCGTTTTTTATTTTGAAAATCTACAATTCGACATTCAATCACTCCGGAATATTTTTCCCAAACTTCGAGAAATCTGTATATACTTCTCGCGAGATGAAACGGACCAGTGCGATGTTCTTTACGCTCAAACCATTTTGAAAGCGTTTCTGCCAATGTTCAGAGCGTGAAGTTGAATCGTGTCCCTCTCCAAGAGAATCTTTCCATTCAACATATCGGAATGGCAAATTTAGAAGAGTTCAAGTTATTATCTCGAAGCACTATGAATGTTGATTGTCTTTTCACATGGAATTTCGAAAGTTGTATTGTAAATACAGTTCAAATGTCGCTCCGAGACTGGAATCGTTTTTTCAAATTGTGGATTAAAGGATCCAATCCAAGGTTGAAGGAATTGTACATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>472 453 44 31</canonical_bands>
                <polymorphic_bands>925 44 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTCTTCATTTACCAATCACAT</pcr_primer_p1>
		<pcr_primer_p2>GGATATTGAACAGAGATGATGAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCTCTTCATTTACCAATCACATCTATTCGATTAATAATGCAGGATGATCCACGGATTGTTCTCGAATTTTGGGATGTTTCCATTGTGTTCGAGTTGGTAATGAGCAGAGACTACGAAAAAATGATGAGCTTGAATGACCTTCTAGTTAATGTGAATGTATTTAGAGGGAACCCAGAGAAAAAACTAGCATTAATAATGTCAAATAGGAGAAAGACTTTAGGAGAATGGATTCATCATCTCTGTTCAATATCC</canonical_amplicon>
		<polymorphic_amplicon>GCTCTTCATTTACCAATCACATCTATTCGATTAATAATGCAGGATGATCCACGGATTGTTCTCGAATTTTGGGATGTTTCCATTGTGTTCGAGTTGGTAATGAGCAGAGACTACGAAAAAATGATGAGCTTGAATGACCTTCTAGTTAATGTGAATGTATTTAGAGGGAACSCAGAGAAAAAACTAGCATTAATAATGTCAAATAGGAGAAAGACTTTAGGAGAATGGATTCATCATCTCTGTTCAATATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35811</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>306862</contig_pos>
        <strand></strand>
        <context>GAATGGGGGG[C/T]AGAAAGAGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTTTTCCGAACACTACGTTTTTATGAGGAAAAGAAAACGAATGGGGGG</left_flank>
        <right_flank>AGAAAGAGAGGGAAGAGGCCACAGTCAATTTGTTGGATTAGACTGGGTGA</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTGACAGCAACTTTCAAGCAAGGCGCTTTCTATTTCCTGTCTTTTCCTTTAGAAAACACAGAAAATTATGAAAAAACAATGCCCATTTTCTAATTTCACTACTTTTGACTTCCCATCCGCTATTCCGCGATTTTCAGATGTTCCTAGGGATATTTCCGTTGCGGCGATTAGTTCACCAGCTAGCACATCTCATTTCCTACATTTTACACCAAAAATTTTCGAAAAACGAGCGGAAATCGATGAAGAAACAGCCGGCGACGGGGTACCGATTTCGTCAGTCACACACACACACAAACCGGGAAGGCCGACCGCTTCGCACCGAGTGGCGCGTCGCGTTTGCGCGCTAGTTCAAAATCGAGACGCGTCGCTCTTCTCTGCCGTCTCTTCGCGCCAAGCGCATCTCTCGTTCCTATCTCTTTTGCTTTTCGTATCGTCTCGTTTCGGTTTTCTTTTTCCGAACACTACGTTTTTATGAGGAAAAGAAAACGAATGGGGGGCAGAAAGAGAGGGAAGAGGCCACAGTCAATTTGTTGGATTAGACTGGGTGAGGATGGAGGAGAAATAAGAAATAACACAGCGATGACACAAACACACGTGAAAAGAATTAGAAATGAGCGGGGTGATGAGCTGGAGCCGAGGAAATCGATATGGTAACAGGAAAAACGGAGAAAATGGGGAGAACGAATGACAAAAAACCGATAGAGTGAAACAATGGTAACAGGGAGAAGATGAATTCTCTCTCCGTTCTTCTTCTTCTTTTTCTTCCTCTCGACAACCTGTTTTCAAAAAAGTTACACCGAAAGTTGGTGTATTGATAAATTACAGGCATGTGATTCTCTTCTTTTTGAAGTCGTTTGGTCGGAATAAGGTACAAGAATTTTTTGTTTAAAAAAATCAAAGAAAAAACTGGAAAAACGGTGCGTGCGAAATTGAGCATTTTAGGCGAGCGAACGGCTATTCGAAAATAGCGGGGCGTTTCAAGAAACACCAAAGATGAC</canonical>
            <polymorphic>CACTGACAGCAACTTTCAAGCAAGGCGCTTTCTATTTCCTGTCTTTTCCTTTAGAAAACACAGAAAATTATGAAAAAACAATGCCCATTTTCTAATTTCACTACTTTTGACTTCCCATCCGCTATTCCGCGATTTTCAGATGTTCCTAGGGATATTTCCGTTGCGGCGATTAGTTCACCAGCTAGCACATCTCATTTCCTACATTTTACACCAAAAATTTTCGAAAAACGAGCGGAAATCGATGAAGAAACAGCCGGCGACGGGGTACCGATTTCGTCAGTCACACACACACACAAACCGGGAAGGCCGACCGCTTCGCACCGAGTGGCGCGTCGCGTTTGCGCGCTAGTTCAAAATCGAGACGCGTCGCTCTTCTCTGCCGTCTCTTCGCGCCAAGCGCATCTCTCGTTCCTATCTCTTTTGCTTTTCGTATCGTCTCGTTTCGGTTTTCTTTTTCCGAACACTACGTTTTTATGAGGAAAAGAAAACGAATGGGGGGYAGAAAGAGAGGGAAGAGGCCACAGTCAATTTGTTGGATTAGACTGGGTGAGGATGGAGGAGAAATAAGAAATAACACAGCGATGACACAAACACACGTGAAAAGAATTAGAAATGAGCGGGGTGATGAGCTGGAGCCGAGGAAATCGATATGGTAACAGGAAAAACGGAGAAAATGGGGAGAACGAATGACAAAAAACCGATAGAGTGAAACAATGGTAACAGGGAGAAGATGAATTCTCTCTCCGTTCTTCTTCTTCTTTTTCTTCCTCTCGACAACCTGTTTTCAAAAAAGTTACACCGAAAGTTGGTGTATTGATAAATTACAGGCATGTGATTCTCTTCTTTTTGAAGTCGTTTGGTCGGAATAAGGTACAAGAATTTTTTGTTTAAAAAAATCAAAGAAAAAACTGGAAAAACGGTGCGTGCGAAATTGAGCATTTTAGGCGAGCGAACGGCTATTCGAAAATAGCGGGGCGTTTCAAGAAACACCAAAGATGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCGTATCGTCTCGTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCCGTTTTTCCTGTTAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTCGTATCGTCTCGTTTCGGTTTTCTTTTTCCGAACACTACGTTTTTATGAGGAAAAGAAAACGAATGGGGGGCAGAAAGAGAGGGAAGAGGCCACAGTCAATTTGTTGGATTAGACTGGGTGAGGATGGAGGAGAAATAAGAAATAACACAGCGATGACACAAACACACGTGAAAAGAATTAGAAATGAGCGGGGTGATGAGCTGGAGCCGAGGAAATCGATATGGTAACAGGAAAAACGGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCGTATCGTCTCGTTTCGGTTTTCTTTTTCCGAACACTACGTTTTTATGAGGAAAAGAAAACGAATGGGGGGYAGAAAGAGAGGGAAGAGGCCACAGTCAATTTGTTGGATTAGACTGGGTGAGGATGGAGGAGAAATAAGAAATAACACAGCGATGACACAAACACACGTGAAAAGAATTAGAAATGAGCGGGGTGATGAGCTGGAGCCGAGGAAATCGATATGGTAACAGGAAAAACGGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35812</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>306919</contig_pos>
        <strand></strand>
        <context>GTGAGGATGG[A/G]GGAGAAATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAGGGAAGAGGCCACAGTCAATTTGTTGGATTAGACTGGGTGAGGATGG</left_flank>
        <right_flank>GGAGAAATAAGAAATAACACAGCGATGACACAAACACACGTGAAAAGAAT</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACAGAAAATTATGAAAAAACAATGCCCATTTTCTAATTTCACTACTTTTGACTTCCCATCCGCTATTCCGCGATTTTCAGATGTTCCTAGGGATATTTCCGTTGCGGCGATTAGTTCACCAGCTAGCACATCTCATTTCCTACATTTTACACCAAAAATTTTCGAAAAACGAGCGGAAATCGATGAAGAAACAGCCGGCGACGGGGTACCGATTTCGTCAGTCACACACACACACAAACCGGGAAGGCCGACCGCTTCGCACCGAGTGGCGCGTCGCGTTTGCGCGCTAGTTCAAAATCGAGACGCGTCGCTCTTCTCTGCCGTCTCTTCGCGCCAAGCGCATCTCTCGTTCCTATCTCTTTTGCTTTTCGTATCGTCTCGTTTCGGTTTTCTTTTTCCGAACACTACGTTTTTATGAGGAAAAGAAAACGAATGGGGGGCAGAAAGAGAGGGAAGAGGCCACAGTCAATTTGTTGGATTAGACTGGGTGAGGATGGAGGAGAAATAAGAAATAACACAGCGATGACACAAACACACGTGAAAAGAATTAGAAATGAGCGGGGTGATGAGCTGGAGCCGAGGAAATCGATATGGTAACAGGAAAAACGGAGAAAATGGGGAGAACGAATGACAAAAAACCGATAGAGTGAAACAATGGTAACAGGGAGAAGATGAATTCTCTCTCCGTTCTTCTTCTTCTTTTTCTTCCTCTCGACAACCTGTTTTCAAAAAAGTTACACCGAAAGTTGGTGTATTGATAAATTACAGGCATGTGATTCTCTTCTTTTTGAAGTCGTTTGGTCGGAATAAGGTACAAGAATTTTTTGTTTAAAAAAATCAAAGAAAAAACTGGAAAAACGGTGCGTGCGAAATTGAGCATTTTAGGCGAGCGAACGGCTATTCGAAAATAGCGGGGCGTTTCAAGAAACACCAAAGATGACGCGAAAGTGCACAAGTTTTTTGGGAGGTGAGATACGGTACACATGCTCCAGATATGG</canonical>
            <polymorphic>ACACAGAAAATTATGAAAAAACAATGCCCATTTTCTAATTTCACTACTTTTGACTTCCCATCCGCTATTCCGCGATTTTCAGATGTTCCTAGGGATATTTCCGTTGCGGCGATTAGTTCACCAGCTAGCACATCTCATTTCCTACATTTTACACCAAAAATTTTCGAAAAACGAGCGGAAATCGATGAAGAAACAGCCGGCGACGGGGTACCGATTTCGTCAGTCACACACACACACAAACCGGGAAGGCCGACCGCTTCGCACCGAGTGGCGCGTCGCGTTTGCGCGCTAGTTCAAAATCGAGACGCGTCGCTCTTCTCTGCCGTCTCTTCGCGCCAAGCGCATCTCTCGTTCCTATCTCTTTTGCTTTTCGTATCGTCTCGTTTCGGTTTTCTTTTTCCGAACACTACGTTTTTATGAGGAAAAGAAAACGAATGGGGGGCAGAAAGAGAGGGAAGAGGCCACAGTCAATTTGTTGGATTAGACTGGGTGAGGATGGRGGAGAAATAAGAAATAACACAGCGATGACACAAACACACGTGAAAAGAATTAGAAATGAGCGGGGTGATGAGCTGGAGCCGAGGAAATCGATATGGTAACAGGAAAAACGGAGAAAATGGGGAGAACGAATGACAAAAAACCGATAGAGTGAAACAATGGTAACAGGGAGAAGATGAATTCTCTCTCCGTTCTTCTTCTTCTTTTTCTTCCTCTCGACAACCTGTTTTCAAAAAAGTTACACCGAAAGTTGGTGTATTGATAAATTACAGGCATGTGATTCTCTTCTTTTTGAAGTCGTTTGGTCGGAATAAGGTACAAGAATTTTTTGTTTAAAAAAATCAAAGAAAAAACTGGAAAAACGGTGCGTGCGAAATTGAGCATTTTAGGCGAGCGAACGGCTATTCGAAAATAGCGGGGCGTTTCAAGAAACACCAAAGATGACGCGAAAGTGCACAAGTTTTTTGGGAGGTGAGATACGGTACACATGCTCCAGATATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACGTTTTTATGAGGAAAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTTCACTCTATCGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TACGTTTTTATGAGGAAAAGAAAACGAATGGGGGGCAGAAAGAGAGGGAAGAGGCCACAGTCAATTTGTTGGATTAGACTGGGTGAGGATGGAGGAGAAATAAGAAATAACACAGCGATGACACAAACACACGTGAAAAGAATTAGAAATGAGCGGGGTGATGAGCTGGAGCCGAGGAAATCGATATGGTAACAGGAAAAACGGAGAAAATGGGGAGAACGAATGACAAAAAACCGATAGAGTGAAACAAT</canonical_amplicon>
		<polymorphic_amplicon>TACGTTTTTATGAGGAAAAGAAAACGAATGGGGGGCAGAAAGAGAGGGAAGAGGCCACAGTCAATTTGTTGGATTAGACTGGGTGAGGATGGRGGAGAAATAAGAAATAACACAGCGATGACACAAACACACGTGAAAAGAATTAGAAATGAGCGGGGTGATGAGCTGGAGCCGAGGAAATCGATATGGTAACAGGAAAAACGGAGAAAATGGGGAGAACGAATGACAAAAAACCGATAGAGTGAAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35813</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>306943</contig_pos>
        <strand></strand>
        <context>ATAACACAGC[G/C]ATGACACAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TGTTGGATTAGACTGGGTGAGGATGGAGGAGAAATAAGAAATAACACAGC</left_flank>
        <right_flank>ATGACACAAACACACGTGAAAAGAATTAGAAATGAGCGGGGTGATGAGCT</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCCCATTTTCTAATTTCACTACTTTTGACTTCCCATCCGCTATTCCGCGATTTTCAGATGTTCCTAGGGATATTTCCGTTGCGGCGATTAGTTCACCAGCTAGCACATCTCATTTCCTACATTTTACACCAAAAATTTTCGAAAAACGAGCGGAAATCGATGAAGAAACAGCCGGCGACGGGGTACCGATTTCGTCAGTCACACACACACACAAACCGGGAAGGCCGACCGCTTCGCACCGAGTGGCGCGTCGCGTTTGCGCGCTAGTTCAAAATCGAGACGCGTCGCTCTTCTCTGCCGTCTCTTCGCGCCAAGCGCATCTCTCGTTCCTATCTCTTTTGCTTTTCGTATCGTCTCGTTTCGGTTTTCTTTTTCCGAACACTACGTTTTTATGAGGAAAAGAAAACGAATGGGGGGCAGAAAGAGAGGGAAGAGGCCACAGTCAATTTGTTGGATTAGACTGGGTGAGGATGGAGGAGAAATAAGAAATAACACAGCGATGACACAAACACACGTGAAAAGAATTAGAAATGAGCGGGGTGATGAGCTGGAGCCGAGGAAATCGATATGGTAACAGGAAAAACGGAGAAAATGGGGAGAACGAATGACAAAAAACCGATAGAGTGAAACAATGGTAACAGGGAGAAGATGAATTCTCTCTCCGTTCTTCTTCTTCTTTTTCTTCCTCTCGACAACCTGTTTTCAAAAAAGTTACACCGAAAGTTGGTGTATTGATAAATTACAGGCATGTGATTCTCTTCTTTTTGAAGTCGTTTGGTCGGAATAAGGTACAAGAATTTTTTGTTTAAAAAAATCAAAGAAAAAACTGGAAAAACGGTGCGTGCGAAATTGAGCATTTTAGGCGAGCGAACGGCTATTCGAAAATAGCGGGGCGTTTCAAGAAACACCAAAGATGACGCGAAAGTGCACAAGTTTTTTGGGAGGTGAGATACGGTACACATGCTCCAGATATGGAGCAAATTTCAGCCAAATATCGGG</canonical>
            <polymorphic>TGCCCATTTTCTAATTTCACTACTTTTGACTTCCCATCCGCTATTCCGCGATTTTCAGATGTTCCTAGGGATATTTCCGTTGCGGCGATTAGTTCACCAGCTAGCACATCTCATTTCCTACATTTTACACCAAAAATTTTCGAAAAACGAGCGGAAATCGATGAAGAAACAGCCGGCGACGGGGTACCGATTTCGTCAGTCACACACACACACAAACCGGGAAGGCCGACCGCTTCGCACCGAGTGGCGCGTCGCGTTTGCGCGCTAGTTCAAAATCGAGACGCGTCGCTCTTCTCTGCCGTCTCTTCGCGCCAAGCGCATCTCTCGTTCCTATCTCTTTTGCTTTTCGTATCGTCTCGTTTCGGTTTTCTTTTTCCGAACACTACGTTTTTATGAGGAAAAGAAAACGAATGGGGGGCAGAAAGAGAGGGAAGAGGCCACAGTCAATTTGTTGGATTAGACTGGGTGAGGATGGAGGAGAAATAAGAAATAACACAGCSATGACACAAACACACGTGAAAAGAATTAGAAATGAGCGGGGTGATGAGCTGGAGCCGAGGAAATCGATATGGTAACAGGAAAAACGGAGAAAATGGGGAGAACGAATGACAAAAAACCGATAGAGTGAAACAATGGTAACAGGGAGAAGATGAATTCTCTCTCCGTTCTTCTTCTTCTTTTTCTTCCTCTCGACAACCTGTTTTCAAAAAAGTTACACCGAAAGTTGGTGTATTGATAAATTACAGGCATGTGATTCTCTTCTTTTTGAAGTCGTTTGGTCGGAATAAGGTACAAGAATTTTTTGTTTAAAAAAATCAAAGAAAAAACTGGAAAAACGGTGCGTGCGAAATTGAGCATTTTAGGCGAGCGAACGGCTATTCGAAAATAGCGGGGCGTTTCAAGAAACACCAAAGATGACGCGAAAGTGCACAAGTTTTTTGGGAGGTGAGATACGGTACACATGCTCCAGATATGGAGCAAATTTCAGCCAAATATCGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACGTTTTTATGAGGAAAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTTCACTCTATCGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TACGTTTTTATGAGGAAAAGAAAACGAATGGGGGGCAGAAAGAGAGGGAAGAGGCCACAGTCAATTTGTTGGATTAGACTGGGTGAGGATGGAGGAGAAATAAGAAATAACACAGCGATGACACAAACACACGTGAAAAGAATTAGAAATGAGCGGGGTGATGAGCTGGAGCCGAGGAAATCGATATGGTAACAGGAAAAACGGAGAAAATGGGGAGAACGAATGACAAAAAACCGATAGAGTGAAACAAT</canonical_amplicon>
		<polymorphic_amplicon>TACGTTTTTATGAGGAAAAGAAAACGAATGGGGGGCAGAAAGAGAGGGAAGAGGCCACAGTCAATTTGTTGGATTAGACTGGGTGAGGATGGAGGAGAAATAAGAAATAACACAGCSATGACACAAACACACGTGAAAAGAATTAGAAATGAGCGGGGTGATGAGCTGGAGCCGAGGAAATCGATATGGTAACAGGAAAAACGGAGAAAATGGGGAGAACGAATGACAAAAAACCGATAGAGTGAAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35814</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>307014</contig_pos>
        <strand></strand>
        <context>AAATCGATAT[G/A]GTAACAGGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAGAATTAGAAATGAGCGGGGTGATGAGCTGGAGCCGAGGAAATCGATAT</left_flank>
        <right_flank>GTAACAGGAAAAACGGAGAAAATGGGGAGAACGAATGACAAAAAACCGAT</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTCCGTTGCGGCGATTAGTTCACCAGCTAGCACATCTCATTTCCTACATTTTACACCAAAAATTTTCGAAAAACGAGCGGAAATCGATGAAGAAACAGCCGGCGACGGGGTACCGATTTCGTCAGTCACACACACACACAAACCGGGAAGGCCGACCGCTTCGCACCGAGTGGCGCGTCGCGTTTGCGCGCTAGTTCAAAATCGAGACGCGTCGCTCTTCTCTGCCGTCTCTTCGCGCCAAGCGCATCTCTCGTTCCTATCTCTTTTGCTTTTCGTATCGTCTCGTTTCGGTTTTCTTTTTCCGAACACTACGTTTTTATGAGGAAAAGAAAACGAATGGGGGGCAGAAAGAGAGGGAAGAGGCCACAGTCAATTTGTTGGATTAGACTGGGTGAGGATGGAGGAGAAATAAGAAATAACACAGCGATGACACAAACACACGTGAAAAGAATTAGAAATGAGCGGGGTGATGAGCTGGAGCCGAGGAAATCGATATGGTAACAGGAAAAACGGAGAAAATGGGGAGAACGAATGACAAAAAACCGATAGAGTGAAACAATGGTAACAGGGAGAAGATGAATTCTCTCTCCGTTCTTCTTCTTCTTTTTCTTCCTCTCGACAACCTGTTTTCAAAAAAGTTACACCGAAAGTTGGTGTATTGATAAATTACAGGCATGTGATTCTCTTCTTTTTGAAGTCGTTTGGTCGGAATAAGGTACAAGAATTTTTTGTTTAAAAAAATCAAAGAAAAAACTGGAAAAACGGTGCGTGCGAAATTGAGCATTTTAGGCGAGCGAACGGCTATTCGAAAATAGCGGGGCGTTTCAAGAAACACCAAAGATGACGCGAAAGTGCACAAGTTTTTTGGGAGGTGAGATACGGTACACATGCTCCAGATATGGAGCAAATTTCAGCCAAATATCGGGAATAAGCTGAAAAAAAGCATTAAAAACTAATTTTCAGCTAGGCAGGAAAAAAGAAAAATTCCCGAAAAAAA</canonical>
            <polymorphic>TATTTCCGTTGCGGCGATTAGTTCACCAGCTAGCACATCTCATTTCCTACATTTTACACCAAAAATTTTCGAAAAACGAGCGGAAATCGATGAAGAAACAGCCGGCGACGGGGTACCGATTTCGTCAGTCACACACACACACAAACCGGGAAGGCCGACCGCTTCGCACCGAGTGGCGCGTCGCGTTTGCGCGCTAGTTCAAAATCGAGACGCGTCGCTCTTCTCTGCCGTCTCTTCGCGCCAAGCGCATCTCTCGTTCCTATCTCTTTTGCTTTTCGTATCGTCTCGTTTCGGTTTTCTTTTTCCGAACACTACGTTTTTATGAGGAAAAGAAAACGAATGGGGGGCAGAAAGAGAGGGAAGAGGCCACAGTCAATTTGTTGGATTAGACTGGGTGAGGATGGAGGAGAAATAAGAAATAACACAGCGATGACACAAACACACGTGAAAAGAATTAGAAATGAGCGGGGTGATGAGCTGGAGCCGAGGAAATCGATATRGTAACAGGAAAAACGGAGAAAATGGGGAGAACGAATGACAAAAAACCGATAGAGTGAAACAATGGTAACAGGGAGAAGATGAATTCTCTCTCCGTTCTTCTTCTTCTTTTTCTTCCTCTCGACAACCTGTTTTCAAAAAAGTTACACCGAAAGTTGGTGTATTGATAAATTACAGGCATGTGATTCTCTTCTTTTTGAAGTCGTTTGGTCGGAATAAGGTACAAGAATTTTTTGTTTAAAAAAATCAAAGAAAAAACTGGAAAAACGGTGCGTGCGAAATTGAGCATTTTAGGCGAGCGAACGGCTATTCGAAAATAGCGGGGCGTTTCAAGAAACACCAAAGATGACGCGAAAGTGCACAAGTTTTTTGGGAGGTGAGATACGGTACACATGCTCCAGATATGGAGCAAATTTCAGCCAAATATCGGGAATAAGCTGAAAAAAAGCATTAAAAACTAATTTTCAGCTAGGCAGGAAAAAAGAAAAATTCCCGAAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACGTTTTTATGAGGAAAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTTCACTCTATCGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TACGTTTTTATGAGGAAAAGAAAACGAATGGGGGGCAGAAAGAGAGGGAAGAGGCCACAGTCAATTTGTTGGATTAGACTGGGTGAGGATGGAGGAGAAATAAGAAATAACACAGCGATGACACAAACACACGTGAAAAGAATTAGAAATGAGCGGGGTGATGAGCTGGAGCCGAGGAAATCGATATGGTAACAGGAAAAACGGAGAAAATGGGGAGAACGAATGACAAAAAACCGATAGAGTGAAACAAT</canonical_amplicon>
		<polymorphic_amplicon>TACGTTTTTATGAGGAAAAGAAAACGAATGGGGGGCAGAAAGAGAGGGAAGAGGCCACAGTCAATTTGTTGGATTAGACTGGGTGAGGATGGAGGAGAAATAAGAAATAACACAGCGATGACACAAACACACGTGAAAAGAATTAGAAATGAGCGGGGTGATGAGCTGGAGCCGAGGAAATCGATATRGTAACAGGAAAAACGGAGAAAATGGGGAGAACGAATGACAAAAAACCGATAGAGTGAAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35815</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>310461</contig_pos>
        <strand></strand>
        <context>ATTTTCTCGG[T/C]tgtcggcttg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGCAATTTCCGTTTTTAAAGTAAAAGTCTAGATGATCCTAATTTTCTCGG</left_flank>
        <right_flank>TGTCGGCTTGCAACTTCTGGACGGAAGTTGAGGGGGGTTCGGCTTTTGGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTCCGAATTCAGATTTTTGTTCTTTCTGAAAACCCGACATTCTGAAACTCGTTTGAAAACTCTGGGTGAACTAAAATAAAATTGACAAAAAAAACGAATTTATCAGGATCCTGGAATTCTGAGAAGCTGACCATGAACTGATCAAACTTCGACCTTACTTCCACTTTCGACCTAAACTTGAAGCCTGTAACAATAATCCCCCTTTACTTTGAGATAAGTTATCTCGGCTCCAATGGAAGATATTAAAAAGCGATCAACTAACAAAATATTTTCGATAGTATGATAAACATTTTATTAGTTGTTCACATTTTGATATCTCTCACAATAACCGAGATAATTTAAGTCAAAGTTGCGGGTCAGTCCAAGTATGACGATGGCCCGCTACACAGCCGTTGATGGGCATTTCCTGACCAAAACTGACCATCTTGATTTATGTTTCTTAAAAAAGCAATTTCCGTTTTTAAAGTAAAAGTCTAGATGATCCTAATTTTCTCGGTTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGGGGGGTTCGGCTTTTGGAAGGATTTTGGTCAGGTTTTTGTCAGAAGCTGCCCACTGACAGCAGTGGAACGGACAATGGTCAGATTTTGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGAAAGCTGGCCGGTAATTCGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGTTCTTTCGGACCGTCTGAATTCCCAATTTTGGATGAAGTCAGATTTCTTCAAATGCTTTACTAACCAGCTTCGTCTGTTTCATCTTGAAGTCTGATCCTGAAGTCATAACAATCCTTGAATTCCTGAATTTTTGAATTTTCATTCTTAAATTTCTCTCATAAAAAATTCTCATCCCAAAAAAAGCTTTTTGAACCTTCAATTTCCATTTTCAGCATCGCTCATAAATCTCTCTGATTGACGAGAGTCTACCCGATCATTCCAATTTAGATGCCACTCCATCTTCCGTTTTTTTG</canonical>
            <polymorphic>ATTTTCCGAATTCAGATTTTTGTTCTTTCTGAAAACCCGACATTCTGAAACTCGTTTGAAAACTCTGGGTGAACTAAAATAAAATTGACAAAAAAAACGAATTTATCAGGATCCTGGAATTCTGAGAAGCTGACCATGAACTGATCAAACTTCGACCTTACTTCCACTTTCGACCTAAACTTGAAGCCTGTAACAATAATCCCCCTTTACTTTGAGATAAGTTATCTCGGCTCCAATGGAAGATATTAAAAAGCGATCAACTAACAAAATATTTTCGATAGTATGATAAACATTTTATTAGTTGTTCACATTTTGATATCTCTCACAATAACCGAGATAATTTAAGTCAAAGTTGCGGGTCAGTCCAAGTATGACGATGGCCCGCTACACAGCCGTTGATGGGCATTTCCTGACCAAAACTGACCATCTTGATTTATGTTTCTTAAAAAAGCAATTTCCGTTTTTAAAGTAAAAGTCTAGATGATCCTAATTTTCTCGGYTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGGGGGGTTCGGCTTTTGGAAGGATTTTGGTCAGGTTTTTGTCAGAAGCTGCCCACTGACAGCAGTGGAACGGACAATGGTCAGATTTTGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGAAAGCTGGCCGGTAATTCGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGTTCTTTCGGACCGTCTGAATTCCCAATTTTGGATGAAGTCAGATTTCTTCAAATGCTTTACTAACCAGCTTCGTCTGTTTCATCTTGAAGTCTGATCCTGAAGTCATAACAATCCTTGAATTCCTGAATTTTTGAATTTTCATTCTTAAATTTCTCTCATAAAAAATTCTCATCCCAAAAAAAGCTTTTTGAACCTTCAATTTCCATTTTCAGCATCGCTCATAAATCTCTCTGATTGACGAGAGTCTACCCGATCATTCCAATTTAGATGCCACTCCATCTTCCGTTTTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCAATTTCCGTTTTTAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GTCCGAAAGAACAAAGACATT</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>AGCAATTTCCGTTTTTAAAGTAAAAGTCTAGATGATCCTAATTTTCTCGGTTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGGGGGGTTCGGCTTTTGGAAGGATTTTGGTCAGGTTTTTGTCAGAAGCTGCCCACTGACAGCAGTGGAACGGACAATGGTCAGATTTTGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGAAAGCTGGCCGGTAATTCGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGTTCTTTCGGAC</canonical_amplicon>
		<polymorphic_amplicon>AGCAATTTCCGTTTTTAAAGTAAAAGTCTAGATGATCCTAATTTTCTCGGYTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGGGGGGTTCGGCTTTTGGAAGGATTTTGGTCAGGTTTTTGTCAGAAGCTGCCCACTGACAGCAGTGGAACGGACAATGGTCAGATTTTGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGAAAGCTGGCCGGTAATTCGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGTTCTTTCGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35816</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>310512</contig_pos>
        <strand></strand>
        <context>ggcttttgga[A/C]ggattttggt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGTCGGCTTGCAACTTCTGGACGGAAGTTGAGGGGGGTTCGGCTTTTGGA</left_flank>
        <right_flank>GGATTTTGGTCAGGTTTTTGTCAGAAGCTGCCCACTGACAGCAGTGGAAC</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTTTGAAAACTCTGGGTGAACTAAAATAAAATTGACAAAAAAAACGAATTTATCAGGATCCTGGAATTCTGAGAAGCTGACCATGAACTGATCAAACTTCGACCTTACTTCCACTTTCGACCTAAACTTGAAGCCTGTAACAATAATCCCCCTTTACTTTGAGATAAGTTATCTCGGCTCCAATGGAAGATATTAAAAAGCGATCAACTAACAAAATATTTTCGATAGTATGATAAACATTTTATTAGTTGTTCACATTTTGATATCTCTCACAATAACCGAGATAATTTAAGTCAAAGTTGCGGGTCAGTCCAAGTATGACGATGGCCCGCTACACAGCCGTTGATGGGCATTTCCTGACCAAAACTGACCATCTTGATTTATGTTTCTTAAAAAAGCAATTTCCGTTTTTAAAGTAAAAGTCTAGATGATCCTAATTTTCTCGGTTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGGGGGGTTCGGCTTTTGGAAGGATTTTGGTCAGGTTTTTGTCAGAAGCTGCCCACTGACAGCAGTGGAACGGACAATGGTCAGATTTTGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGAAAGCTGGCCGGTAATTCGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGTTCTTTCGGACCGTCTGAATTCCCAATTTTGGATGAAGTCAGATTTCTTCAAATGCTTTACTAACCAGCTTCGTCTGTTTCATCTTGAAGTCTGATCCTGAAGTCATAACAATCCTTGAATTCCTGAATTTTTGAATTTTCATTCTTAAATTTCTCTCATAAAAAATTCTCATCCCAAAAAAAGCTTTTTGAACCTTCAATTTCCATTTTCAGCATCGCTCATAAATCTCTCTGATTGACGAGAGTCTACCCGATCATTCCAATTTAGATGCCACTCCATCTTCCGTTTTTTTGGCGGTGCTGCTCCATTTTCTCATCCGTCTCTCCCCTACAGCACACTATTTC</canonical>
            <polymorphic>TCGTTTGAAAACTCTGGGTGAACTAAAATAAAATTGACAAAAAAAACGAATTTATCAGGATCCTGGAATTCTGAGAAGCTGACCATGAACTGATCAAACTTCGACCTTACTTCCACTTTCGACCTAAACTTGAAGCCTGTAACAATAATCCCCCTTTACTTTGAGATAAGTTATCTCGGCTCCAATGGAAGATATTAAAAAGCGATCAACTAACAAAATATTTTCGATAGTATGATAAACATTTTATTAGTTGTTCACATTTTGATATCTCTCACAATAACCGAGATAATTTAAGTCAAAGTTGCGGGTCAGTCCAAGTATGACGATGGCCCGCTACACAGCCGTTGATGGGCATTTCCTGACCAAAACTGACCATCTTGATTTATGTTTCTTAAAAAAGCAATTTCCGTTTTTAAAGTAAAAGTCTAGATGATCCTAATTTTCTCGGTTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGGGGGGTTCGGCTTTTGGAMGGATTTTGGTCAGGTTTTTGTCAGAAGCTGCCCACTGACAGCAGTGGAACGGACAATGGTCAGATTTTGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGAAAGCTGGCCGGTAATTCGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGTTCTTTCGGACCGTCTGAATTCCCAATTTTGGATGAAGTCAGATTTCTTCAAATGCTTTACTAACCAGCTTCGTCTGTTTCATCTTGAAGTCTGATCCTGAAGTCATAACAATCCTTGAATTCCTGAATTTTTGAATTTTCATTCTTAAATTTCTCTCATAAAAAATTCTCATCCCAAAAAAAGCTTTTTGAACCTTCAATTTCCATTTTCAGCATCGCTCATAAATCTCTCTGATTGACGAGAGTCTACCCGATCATTCCAATTTAGATGCCACTCCATCTTCCGTTTTTTTGGCGGTGCTGCTCCATTTTCTCATCCGTCTCTCCCCTACAGCACACTATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCAATTTCCGTTTTTAAAGTA</pcr_primer_p1>
		<pcr_primer_p2>GTCCGAAAGAACAAAGACATT</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>AGCAATTTCCGTTTTTAAAGTAAAAGTCTAGATGATCCTAATTTTCTCGGTTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGGGGGGTTCGGCTTTTGGAAGGATTTTGGTCAGGTTTTTGTCAGAAGCTGCCCACTGACAGCAGTGGAACGGACAATGGTCAGATTTTGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGAAAGCTGGCCGGTAATTCGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGTTCTTTCGGAC</canonical_amplicon>
		<polymorphic_amplicon>AGCAATTTCCGTTTTTAAAGTAAAAGTCTAGATGATCCTAATTTTCTCGGTTGTCGGCTTGCAACTTCTGGACGGAAGTTGAGGGGGGTTCGGCTTTTGGAMGGATTTTGGTCAGGTTTTTGTCAGAAGCTGCCCACTGACAGCAGTGGAACGGACAATGGTCAGATTTTGCCGGAATTTGAAGGCGCTGCGTGTTAAGAGGTCGAAAGCTGGCCGGTAATTCGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGTTCTTTCGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35817</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>313631</contig_pos>
        <strand></strand>
        <context>taactggtaa[C/A]ctattggtga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CAATTTATCTCGGTTCCTATAAGAGTTATCAAAAAGTAATTAACTGGTAA</left_flank>
        <right_flank>CTATTGGTGATATTATGATAAACATTTTATCAGTTGATGTGTTTTTGATA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTCAATCTTACGGTAGGTAGAAAATATTCAAAATGGGTTTAGCAATTATAACATTTTCAGGAAATGTTCCTCCACCACATCTTCTTTGCGTACCTCTTCACGCGGTTGATTGTCTCTGGTAAAACGATTTTATCTGGAGTTTATATTCCATTAGAAGTCACCAACATCGTTTGCTTCTTCTATATGCTTAAGAAATCCTGGGAAACGTATTTCGTCGTTATGGACCAACTATTCGAGTACACTGGATATGACGAATGGATTGATGAGAAGCTTGACTTCTTTTTCTTTTGATGATTTTTTTTTTGAAAATATTTTCTTGGTCCCTGATTTTAAATTTCAGCGCTTTTCGATCTCTTTTGCATAGTATTGTCATTTTAAGATCAAGAATTTTGTTTTTGAAAAAAATTACATATTCGAAAATTGTAAACGGGCTCGTTAACTTTGACCCAATTTATCTCGGTTCCTATAAGAGTTATCAAAAAGTAATTAACTGGTAACCTATTGGTGATATTATGATAAACATTTTATCAGTTGATGTGTTTTTGATAGCTTTCACAGGCAACGAGATAAATTGACTCGAAGTTGAAGGCCAGGCATCACGATAAGCGACAATTTTTGGAAAGAGCATCTGAAAGATTCATTTTTCTGTAAACTACAAAATTTTTCAAATGCTCTTTATTATTTGTTTCCTAGAAATACGCTCTCACTCTCACTCTCACTCTCTATTTTCTTCATTTTTTGCGCTAAACAATTATAATGGATGCTTTCTCTCTCCCGCTATTTCCCTTTTCCGCAATTCTTTTTTTGATAGTTTTTCATTTTTCAAGCATCTTCGATTGTAAAAAACCTGTATGATAAGAGAATAAATTTTTGGATACACAACTTCTTTGAAATTTTGAAATTTTTGCATTTTTGAAGGTACAATTCCAAACGTTATCTGAATACATCGATTTTTTAAAGCGTTCACTGTGACCTAATTTATCTCGATTACTATAAGA</canonical>
            <polymorphic>GATTCAATCTTACGGTAGGTAGAAAATATTCAAAATGGGTTTAGCAATTATAACATTTTCAGGAAATGTTCCTCCACCACATCTTCTTTGCGTACCTCTTCACGCGGTTGATTGTCTCTGGTAAAACGATTTTATCTGGAGTTTATATTCCATTAGAAGTCACCAACATCGTTTGCTTCTTCTATATGCTTAAGAAATCCTGGGAAACGTATTTCGTCGTTATGGACCAACTATTCGAGTACACTGGATATGACGAATGGATTGATGAGAAGCTTGACTTCTTTTTCTTTTGATGATTTTTTTTTTGAAAATATTTTCTTGGTCCCTGATTTTAAATTTCAGCGCTTTTCGATCTCTTTTGCATAGTATTGTCATTTTAAGATCAAGAATTTTGTTTTTGAAAAAAATTACATATTCGAAAATTGTAAACGGGCTCGTTAACTTTGACCCAATTTATCTCGGTTCCTATAAGAGTTATCAAAAAGTAATTAACTGGTAAMCTATTGGTGATATTATGATAAACATTTTATCAGTTGATGTGTTTTTGATAGCTTTCACAGGCAACGAGATAAATTGACTCGAAGTTGAAGGCCAGGCATCACGATAAGCGACAATTTTTGGAAAGAGCATCTGAAAGATTCATTTTTCTGTAAACTACAAAATTTTTCAAATGCTCTTTATTATTTGTTTCCTAGAAATACGCTCTCACTCTCACTCTCACTCTCTATTTTCTTCATTTTTTGCGCTAAACAATTATAATGGATGCTTTCTCTCTCCCGCTATTTCCCTTTTCCGCAATTCTTTTTTTGATAGTTTTTCATTTTTCAAGCATCTTCGATTGTAAAAAACCTGTATGATAAGAGAATAAATTTTTGGATACACAACTTCTTTGAAATTTTGAAATTTTTGCATTTTTGAAGGTACAATTCCAAACGTTATCTGAATACATCGATTTTTTAAAGCGTTCACTGTGACCTAATTTATCTCGATTACTATAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGTNACC</site>
                <isoschizomers>
                    <enzyme>BstEII</enzyme>
                    <enzyme>BstPI</enzyme>
                    <enzyme>Eco91I</enzyme>
                    <enzyme>EcoO65I</enzyme>
                    <enzyme>PspEI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>475 337 158 30</canonical_bands>
                <polymorphic_bands>812 158 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATCAAGAATTTTGTTTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>TTCCAAAAATTGTCGCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AGATCAAGAATTTTGTTTTTGAAAAAAATTACATATTCGAAAATTGTAAACGGGCTCGTTAACTTTGACCCAATTTATCTCGGTTCCTATAAGAGTTATCAAAAAGTAATTAACTGGTAACCTATTGGTGATATTATGATAAACATTTTATCAGTTGATGTGTTTTTGATAGCTTTCACAGGCAACGAGATAAATTGACTCGAAGTTGAAGGCCAGGCATCACGATAAGCGACAATTTTTGGAA</canonical_amplicon>
		<polymorphic_amplicon>AGATCAAGAATTTTGTTTTTGAAAAAAATTACATATTCGAAAATTGTAAACGGGCTCGTTAACTTTGACCCAATTTATCTCGGTTCCTATAAGAGTTATCAAAAAGTAATTAACTGGTAAMCTATTGGTGATATTATGATAAACATTTTATCAGTTGATGTGTTTTTGATAGCTTTCACAGGCAACGAGATAAATTGACTCGAAGTTGAAGGCCAGGCATCACGATAAGCGACAATTTTTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35818</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>335976</contig_pos>
        <strand>+</strand>
        <context>TCTGGTCATT[C/T]TGATTTTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGTTTTTTTTTTCAAATTCTCTAGGCCATTAAAATTTTTCTGGTCATT</left_flank>
        <right_flank>TGATTTTTCTAGGCCATCTCAAATGTTCTAGGCTACTTTAAATTTTTTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGCTTAAGGGGAAAAGAGGATAGGTCAAATTTTTTTAGAAATAGATCGCAATCTTTTTGTTTTCTGAAAATTTAGAAGTTACCGAAAAATTGGAAGAGGGGAAATTTTGAAAAAAAAACAGTTTTTTAAAAAATCAAAGTTGTCGAAAAATGTGAAGAAAACAGATGAGAAATTAGAAAATAGAAAAAAAAGATTCGGCGAAAAAAGTAGTAGGTTTACTATTCCAATATAGAAACTGATAGGTGTTGGGTGTTGGGTAAATAGAAAAGAGTGGAAAAAACGAGAAAGTGTGCTCAATTGATAATTTGATAGGGGAGAAGAGTAGGGGTGAGTCATCAGATAGATGAGAAGCCAATTGGTTTTTTAGTTTTTTCCTTTCTTGGGGGAAAATTGAAGATTTTGGGGTTTTTTAAAGTTCGAAATTAGAGATAGTTCCCCATTTAAAAAATTTGTTTTTTTTTTCAAATTCTCTAGGCCATTAAAATTTTTCTGGTCATTTTGATTTTTCTAGGCCATCTCAAATGTTCTAGGCTACTTTAAATTTTTTGGCTACTTTTAATTTTCTCATCCGTTTCGAGATTTCTAGGCGATTCGGGATTTTCTCGGCCATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGACTAATTTGAGTTTTCTAGGCCATTTATTATTTTCTAGGCCAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGTCATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAAATTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCCTAGAAATACTGGTATGGCCTAGATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAATAGCCTAGAAAATTCA</canonical>
            <polymorphic>GGGCTTAAGGGGAAAAGAGGATAGGTCAAATTTTTTTAGAAATAGATCGCAATCTTTTTGTTTTCTGAAAATTTAGAAGTTACCGAAAAATTGGAAGAGGGGAAATTTTGAAAAAAAAACAGTTTTTTAAAAAATCAAAGTTGTCGAAAAATGTGAAGAAAACAGATGAGAAATTAGAAAATAGAAAAAAAAGATTCGGCGAAAAAAGTAGTAGGTTTACTATTCCAATATAGAAACTGATAGGTGTTGGGTGTTGGGTAAATAGAAAAGAGTGGAAAAAACGAGAAAGTGTGCTCAATTGATAATTTGATAGGGGAGAAGAGTAGGGGTGAGTCATCAGATAGATGAGAAGCCAATTGGTTTTTTAGTTTTTTCCTTTCTTGGGGGAAAATTGAAGATTTTGGGGTTTTTTAAAGTTCGAAATTAGAGATAGTTCCCCATTTAAAAAATTTGTTTTTTTTTTCAAATTCTCTAGGCCATTAAAATTTTTCTGGTCATTYTGATTTTTCTAGGCCATCTCAAATGTTCTAGGCTACTTTAAATTTTTTGGCTACTTTTAATTTTCTCATCCGTTTCGAGATTTCTAGGCGATTCGGGATTTTCTCGGCCATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGACTAATTTGAGTTTTCTAGGCCATTTATTATTTTCTAGGCCAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGTCATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAAATTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCCTAGAAATACTGGTATGGCCTAGATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAATAGCCTAGAAAATTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGAGTCATCAGATAGATGAGAAG</pcr_primer_p1>
		<pcr_primer_p2>AAACGGATGAGAAAATTAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTGAGTCATCAGATAGATGAGAAGCCAATTGGTTTTTTAGTTTTTTCCTTTCTTGGGGGAAAATTGAAGATTTTGGGGTTTTTTAAAGTTCGAAATTAGAGATAGTTCCCCATTTAAAAAATTTGTTTTTTTTTTCAAATTCTCTAGGCCATTAAAATTTTTCTGGTCATTTTGATTTTTCTAGGCCATCTCAAATGTTCTAGGCTACTTTAAATTTTTTGGCTACTTTTAATTTTCTCATCCGTTT</canonical_amplicon>
		<polymorphic_amplicon>GTGAGTCATCAGATAGATGAGAAGCCAATTGGTTTTTTAGTTTTTTCCTTTCTTGGGGGAAAATTGAAGATTTTGGGGTTTTTTAAAGTTCGAAATTAGAGATAGTTCCCCATTTAAAAAATTTGTTTTTTTTTTCAAATTCTCTAGGCCATTAAAATTTTTCTGGTCATTYTGATTTTTCTAGGCCATCTCAAATGTTCTAGGCTACTTTAAATTTTTTGGCTACTTTTAATTTTCTCATCCGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35819</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>336020</contig_pos>
        <strand>+</strand>
        <context>TACTTTAAAT[A/T]TTTTGGCTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCATTTTGATTTTTCTAGGCCATCTCAAATGTTCTAGGCTACTTTAAAT</left_flank>
        <right_flank>TTTTGGCTACTTTTAATTTTCTCATCCGTTTCGAGATTTCTAGGCGATTC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATCGCAATCTTTTTGTTTTCTGAAAATTTAGAAGTTACCGAAAAATTGGAAGAGGGGAAATTTTGAAAAAAAAACAGTTTTTTAAAAAATCAAAGTTGTCGAAAAATGTGAAGAAAACAGATGAGAAATTAGAAAATAGAAAAAAAAGATTCGGCGAAAAAAGTAGTAGGTTTACTATTCCAATATAGAAACTGATAGGTGTTGGGTGTTGGGTAAATAGAAAAGAGTGGAAAAAACGAGAAAGTGTGCTCAATTGATAATTTGATAGGGGAGAAGAGTAGGGGTGAGTCATCAGATAGATGAGAAGCCAATTGGTTTTTTAGTTTTTTCCTTTCTTGGGGGAAAATTGAAGATTTTGGGGTTTTTTAAAGTTCGAAATTAGAGATAGTTCCCCATTTAAAAAATTTGTTTTTTTTTTCAAATTCTCTAGGCCATTAAAATTTTTCTGGTCATTTTGATTTTTCTAGGCCATCTCAAATGTTCTAGGCTACTTTAAATTTTTTGGCTACTTTTAATTTTCTCATCCGTTTCGAGATTTCTAGGCGATTCGGGATTTTCTCGGCCATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGACTAATTTGAGTTTTCTAGGCCATTTATTATTTTCTAGGCCAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGTCATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAAATTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCCTAGAAATACTGGTATGGCCTAGATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAATAGCCTAGAAAATTCAAAACAGCTTAGAGGATGCAAAATGGCCTAAAAAATTCATAATGG</canonical>
            <polymorphic>GATCGCAATCTTTTTGTTTTCTGAAAATTTAGAAGTTACCGAAAAATTGGAAGAGGGGAAATTTTGAAAAAAAAACAGTTTTTTAAAAAATCAAAGTTGTCGAAAAATGTGAAGAAAACAGATGAGAAATTAGAAAATAGAAAAAAAAGATTCGGCGAAAAAAGTAGTAGGTTTACTATTCCAATATAGAAACTGATAGGTGTTGGGTGTTGGGTAAATAGAAAAGAGTGGAAAAAACGAGAAAGTGTGCTCAATTGATAATTTGATAGGGGAGAAGAGTAGGGGTGAGTCATCAGATAGATGAGAAGCCAATTGGTTTTTTAGTTTTTTCCTTTCTTGGGGGAAAATTGAAGATTTTGGGGTTTTTTAAAGTTCGAAATTAGAGATAGTTCCCCATTTAAAAAATTTGTTTTTTTTTTCAAATTCTCTAGGCCATTAAAATTTTTCTGGTCATTTTGATTTTTCTAGGCCATCTCAAATGTTCTAGGCTACTTTAAATWTTTTGGCTACTTTTAATTTTCTCATCCGTTTCGAGATTTCTAGGCGATTCGGGATTTTCTCGGCCATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGACTAATTTGAGTTTTCTAGGCCATTTATTATTTTCTAGGCCAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGTCATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAAATTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCCTAGAAATACTGGTATGGCCTAGATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAATAGCCTAGAAAATTCAAAACAGCTTAGAGGATGCAAAATGGCCTAAAAAATTCATAATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>344 130 114 76 58 57 57 38 34 25 19 18 18 12</canonical_bands>
                <polymorphic_bands>344 187 114 76 58 57 38 34 25 19 18 18 12</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>125 112 68 58 57 57 57 51 44 38 38 35 32 32 26 25 19 19 18 18 18 15 13 12 7 6</canonical_bands>
                <polymorphic_bands>125 112 75 68 58 57 57 51 44 38 38 35 32 32 26 25 19 19 18 18 15 13 12 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTAGAGATAGTTCCCCATTTA</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCGAAATGACCTAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>AAATTAGAGATAGTTCCCCATTTAAAAAATTTGTTTTTTTTTTCAAATTCTCTAGGCCATTAAAATTTTTCTGGTCATTTTGATTTTTCTAGGCCATCTCAAATGTTCTAGGCTACTTTAAATTTTTTGGCTACTTTTAATTTTCTCATCCGTTTCGAGATTTCTAGGCGATTCGGGATTTTCTCGGCCATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>AAATTAGAGATAGTTCCCCATTTAAAAAATTTGTTTTTTTTTTCAAATTCTCTAGGCCATTAAAATTTTTCTGGTCATTTTGATTTTTCTAGGCCATCTCAAATGTTCTAGGCTACTTTAAATWTTTTGGCTACTTTTAATTTTCTCATCCGTTTCGAGATTTCTAGGCGATTCGGGATTTTCTCGGCCATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35820</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>336178</contig_pos>
        <strand>+</strand>
        <context>TTTTTTAGAC[C/T]AATTTGAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGAC</left_flank>
        <right_flank>AATTTGAGTTTTCTAGGCCATTTATTATTTTCTAGGCCAATTGGAATTTT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAGTAGTAGGTTTACTATTCCAATATAGAAACTGATAGGTGTTGGGTGTTGGGTAAATAGAAAAGAGTGGAAAAAACGAGAAAGTGTGCTCAATTGATAATTTGATAGGGGAGAAGAGTAGGGGTGAGTCATCAGATAGATGAGAAGCCAATTGGTTTTTTAGTTTTTTCCTTTCTTGGGGGAAAATTGAAGATTTTGGGGTTTTTTAAAGTTCGAAATTAGAGATAGTTCCCCATTTAAAAAATTTGTTTTTTTTTTCAAATTCTCTAGGCCATTAAAATTTTTCTGGTCATTTTGATTTTTCTAGGCCATCTCAAATGTTCTAGGCTACTTTAAATTTTTTGGCTACTTTTAATTTTCTCATCCGTTTCGAGATTTCTAGGCGATTCGGGATTTTCTCGGCCATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGACTAATTTGAGTTTTCTAGGCCATTTATTATTTTCTAGGCCAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGTCATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAAATTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCCTAGAAATACTGGTATGGCCTAGATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAATAGCCTAGAAAATTCAAAACAGCTTAGAGGATGCAAAATGGCCTAAAAAATTCATAATGGCCTGCCTAAAGTTCAGAATTCTTAGAATTCTAGATCCTTCCTTTTCCAGAAAATTTTCTACTACTAAATACTTTCTCGGAAAAAGAAAAAAGTAAATTGAATCACTTTTGAGGTATTGAAGGTGGCCTAATCCGTTCGGACGAGAAGGACACACATAT</canonical>
            <polymorphic>AAAAAGTAGTAGGTTTACTATTCCAATATAGAAACTGATAGGTGTTGGGTGTTGGGTAAATAGAAAAGAGTGGAAAAAACGAGAAAGTGTGCTCAATTGATAATTTGATAGGGGAGAAGAGTAGGGGTGAGTCATCAGATAGATGAGAAGCCAATTGGTTTTTTAGTTTTTTCCTTTCTTGGGGGAAAATTGAAGATTTTGGGGTTTTTTAAAGTTCGAAATTAGAGATAGTTCCCCATTTAAAAAATTTGTTTTTTTTTTCAAATTCTCTAGGCCATTAAAATTTTTCTGGTCATTTTGATTTTTCTAGGCCATCTCAAATGTTCTAGGCTACTTTAAATTTTTTGGCTACTTTTAATTTTCTCATCCGTTTCGAGATTTCTAGGCGATTCGGGATTTTCTCGGCCATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGACYAATTTGAGTTTTCTAGGCCATTTATTATTTTCTAGGCCAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGTCATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAAATTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCCTAGAAATACTGGTATGGCCTAGATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAATAGCCTAGAAAATTCAAAACAGCTTAGAGGATGCAAAATGGCCTAAAAAATTCATAATGGCCTGCCTAAAGTTCAGAATTCTTAGAATTCTAGATCCTTCCTTTTCCAGAAAATTTTCTACTACTAAATACTTTCTCGGAAAAAGAAAAAAGTAAATTGAATCACTTTTGAGGTATTGAAGGTGGCCTAATCCGTTCGGACGAGAAGGACACACATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCGAGTTTTCTAGCTCAT</pcr_primer_p1>
		<pcr_primer_p2>TATTAAAACATTCGAAACATCCT</pcr_primer_p2>
		<pcr_amplicon_size>225</pcr_amplicon_size>
		<canonical_amplicon>ATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGACTAATTTGAGTTTTCTAGGCCATTTATTATTTTCTAGGCCAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGTCATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATA</canonical_amplicon>
		<polymorphic_amplicon>ATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGACYAATTTGAGTTTTCTAGGCCATTTATTATTTTCTAGGCCAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGTCATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35821</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>336204</contig_pos>
        <strand>+</strand>
        <context>GGCCATTTAT[A/T]ATTTTCTAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGCCCATTTTGACTTTTTTAGACTAATTTGAGTTTTCTAGGCCATTTAT</left_flank>
        <right_flank>ATTTTCTAGGCCAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGTC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAGAAACTGATAGGTGTTGGGTGTTGGGTAAATAGAAAAGAGTGGAAAAAACGAGAAAGTGTGCTCAATTGATAATTTGATAGGGGAGAAGAGTAGGGGTGAGTCATCAGATAGATGAGAAGCCAATTGGTTTTTTAGTTTTTTCCTTTCTTGGGGGAAAATTGAAGATTTTGGGGTTTTTTAAAGTTCGAAATTAGAGATAGTTCCCCATTTAAAAAATTTGTTTTTTTTTTCAAATTCTCTAGGCCATTAAAATTTTTCTGGTCATTTTGATTTTTCTAGGCCATCTCAAATGTTCTAGGCTACTTTAAATTTTTTGGCTACTTTTAATTTTCTCATCCGTTTCGAGATTTCTAGGCGATTCGGGATTTTCTCGGCCATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGACTAATTTGAGTTTTCTAGGCCATTTATTATTTTCTAGGCCAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGTCATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAAATTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCCTAGAAATACTGGTATGGCCTAGATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAATAGCCTAGAAAATTCAAAACAGCTTAGAGGATGCAAAATGGCCTAAAAAATTCATAATGGCCTGCCTAAAGTTCAGAATTCTTAGAATTCTAGATCCTTCCTTTTCCAGAAAATTTTCTACTACTAAATACTTTCTCGGAAAAAGAAAAAAGTAAATTGAATCACTTTTGAGGTATTGAAGGTGGCCTAATCCGTTCGGACGAGAAGGACACACATATGAAGAATGGGGAAAAGAAGAAAAAGT</canonical>
            <polymorphic>TATAGAAACTGATAGGTGTTGGGTGTTGGGTAAATAGAAAAGAGTGGAAAAAACGAGAAAGTGTGCTCAATTGATAATTTGATAGGGGAGAAGAGTAGGGGTGAGTCATCAGATAGATGAGAAGCCAATTGGTTTTTTAGTTTTTTCCTTTCTTGGGGGAAAATTGAAGATTTTGGGGTTTTTTAAAGTTCGAAATTAGAGATAGTTCCCCATTTAAAAAATTTGTTTTTTTTTTCAAATTCTCTAGGCCATTAAAATTTTTCTGGTCATTTTGATTTTTCTAGGCCATCTCAAATGTTCTAGGCTACTTTAAATTTTTTGGCTACTTTTAATTTTCTCATCCGTTTCGAGATTTCTAGGCGATTCGGGATTTTCTCGGCCATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGACTAATTTGAGTTTTCTAGGCCATTTATWATTTTCTAGGCCAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGTCATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAAATTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCCTAGAAATACTGGTATGGCCTAGATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAATAGCCTAGAAAATTCAAAACAGCTTAGAGGATGCAAAATGGCCTAAAAAATTCATAATGGCCTGCCTAAAGTTCAGAATTCTTAGAATTCTAGATCCTTCCTTTTCCAGAAAATTTTCTACTACTAAATACTTTCTCGGAAAAAGAAAAAAGTAAATTGAATCACTTTTGAGGTATTGAAGGTGGCCTAATCCGTTCGGACGAGAAGGACACACATATGAAGAATGGGGAAAAGAAGAAAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCGAGTTTTCTAGCTCAT</pcr_primer_p1>
		<pcr_primer_p2>TATTAAAACATTCGAAACATCCT</pcr_primer_p2>
		<pcr_amplicon_size>225</pcr_amplicon_size>
		<canonical_amplicon>ATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGACTAATTTGAGTTTTCTAGGCCATTTATTATTTTCTAGGCCAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGTCATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATA</canonical_amplicon>
		<polymorphic_amplicon>ATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGACTAATTTGAGTTTTCTAGGCCATTTATWATTTTCTAGGCCAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGTCATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35822</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>336216</contig_pos>
        <strand>+</strand>
        <context>TTTTCTAGGC[C/T]AATTGGAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTTTTTTAGACTAATTTGAGTTTTCTAGGCCATTTATTATTTTCTAGGC</left_flank>
        <right_flank>AATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGTCATTCCCAGGTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGGTGTTGGGTGTTGGGTAAATAGAAAAGAGTGGAAAAAACGAGAAAGTGTGCTCAATTGATAATTTGATAGGGGAGAAGAGTAGGGGTGAGTCATCAGATAGATGAGAAGCCAATTGGTTTTTTAGTTTTTTCCTTTCTTGGGGGAAAATTGAAGATTTTGGGGTTTTTTAAAGTTCGAAATTAGAGATAGTTCCCCATTTAAAAAATTTGTTTTTTTTTTCAAATTCTCTAGGCCATTAAAATTTTTCTGGTCATTTTGATTTTTCTAGGCCATCTCAAATGTTCTAGGCTACTTTAAATTTTTTGGCTACTTTTAATTTTCTCATCCGTTTCGAGATTTCTAGGCGATTCGGGATTTTCTCGGCCATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGACTAATTTGAGTTTTCTAGGCCATTTATTATTTTCTAGGCCAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGTCATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAAATTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCCTAGAAATACTGGTATGGCCTAGATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAATAGCCTAGAAAATTCAAAACAGCTTAGAGGATGCAAAATGGCCTAAAAAATTCATAATGGCCTGCCTAAAGTTCAGAATTCTTAGAATTCTAGATCCTTCCTTTTCCAGAAAATTTTCTACTACTAAATACTTTCTCGGAAAAAGAAAAAAGTAAATTGAATCACTTTTGAGGTATTGAAGGTGGCCTAATCCGTTCGGACGAGAAGGACACACATATGAAGAATGGGGAAAAGAAGAAAAAGTAGAAGAAGAACA</canonical>
            <polymorphic>TAGGTGTTGGGTGTTGGGTAAATAGAAAAGAGTGGAAAAAACGAGAAAGTGTGCTCAATTGATAATTTGATAGGGGAGAAGAGTAGGGGTGAGTCATCAGATAGATGAGAAGCCAATTGGTTTTTTAGTTTTTTCCTTTCTTGGGGGAAAATTGAAGATTTTGGGGTTTTTTAAAGTTCGAAATTAGAGATAGTTCCCCATTTAAAAAATTTGTTTTTTTTTTCAAATTCTCTAGGCCATTAAAATTTTTCTGGTCATTTTGATTTTTCTAGGCCATCTCAAATGTTCTAGGCTACTTTAAATTTTTTGGCTACTTTTAATTTTCTCATCCGTTTCGAGATTTCTAGGCGATTCGGGATTTTCTCGGCCATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGACTAATTTGAGTTTTCTAGGCCATTTATTATTTTCTAGGCYAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGTCATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAAATTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCCTAGAAATACTGGTATGGCCTAGATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAATAGCCTAGAAAATTCAAAACAGCTTAGAGGATGCAAAATGGCCTAAAAAATTCATAATGGCCTGCCTAAAGTTCAGAATTCTTAGAATTCTAGATCCTTCCTTTTCCAGAAAATTTTCTACTACTAAATACTTTCTCGGAAAAAGAAAAAAGTAAATTGAATCACTTTTGAGGTATTGAAGGTGGCCTAATCCGTTCGGACGAGAAGGACACACATATGAAGAATGGGGAAAAGAAGAAAAAGTAGAAGAAGAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>236 125 94 74 71 59 57 57 38 38 38 37 19 19 19 19</canonical_bands>
                <polymorphic_bands>236 125 94 74 71 59 57 57 38 38 38 38 37 19 19</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>125 124 112 71 59 57 57 39 38 38 37 35 20 19 19 19 19 19 19 19 19 18 18</canonical_bands>
                <polymorphic_bands>125 124 112 71 59 57 57 39 38 38 38 37 35 20 19 19 19 19 19 19 18 18</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>236 132 125 74 71 59 57 57 38 38 37 19 19 19 19</canonical_bands>
                <polymorphic_bands>236 132 125 74 71 59 57 57 38 38 38 37 19 19</polymorphic_bands>
            </assay>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>500 386 58 56</canonical_bands>
                <polymorphic_bands>886 58 56</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCCGAGTTTTCTAGCTCAT</pcr_primer_p1>
		<pcr_primer_p2>TATTAAAACATTCGAAACATCCT</pcr_primer_p2>
		<pcr_amplicon_size>225</pcr_amplicon_size>
		<canonical_amplicon>ATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGACTAATTTGAGTTTTCTAGGCCATTTATTATTTTCTAGGCCAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGTCATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATA</canonical_amplicon>
		<polymorphic_amplicon>ATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGACTAATTTGAGTTTTCTAGGCCATTTATTATTTTCTAGGCYAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGTCATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35823</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>336253</contig_pos>
        <strand>+</strand>
        <context>ATTTTCTAGG[C/T]CATTCCCAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATTTTCTAGGCCAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGG</left_flank>
        <right_flank>CATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACGAGAAAGTGTGCTCAATTGATAATTTGATAGGGGAGAAGAGTAGGGGTGAGTCATCAGATAGATGAGAAGCCAATTGGTTTTTTAGTTTTTTCCTTTCTTGGGGGAAAATTGAAGATTTTGGGGTTTTTTAAAGTTCGAAATTAGAGATAGTTCCCCATTTAAAAAATTTGTTTTTTTTTTCAAATTCTCTAGGCCATTAAAATTTTTCTGGTCATTTTGATTTTTCTAGGCCATCTCAAATGTTCTAGGCTACTTTAAATTTTTTGGCTACTTTTAATTTTCTCATCCGTTTCGAGATTTCTAGGCGATTCGGGATTTTCTCGGCCATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGACTAATTTGAGTTTTCTAGGCCATTTATTATTTTCTAGGCCAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGTCATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAAATTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCCTAGAAATACTGGTATGGCCTAGATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAATAGCCTAGAAAATTCAAAACAGCTTAGAGGATGCAAAATGGCCTAAAAAATTCATAATGGCCTGCCTAAAGTTCAGAATTCTTAGAATTCTAGATCCTTCCTTTTCCAGAAAATTTTCTACTACTAAATACTTTCTCGGAAAAAGAAAAAAGTAAATTGAATCACTTTTGAGGTATTGAAGGTGGCCTAATCCGTTCGGACGAGAAGGACACACATATGAAGAATGGGGAAAAGAAGAAAAAGTAGAAGAAGAACAAGAGAAGATTAAGAAAGAGAAAAGGATCTCGGGTGGC</canonical>
            <polymorphic>AAAACGAGAAAGTGTGCTCAATTGATAATTTGATAGGGGAGAAGAGTAGGGGTGAGTCATCAGATAGATGAGAAGCCAATTGGTTTTTTAGTTTTTTCCTTTCTTGGGGGAAAATTGAAGATTTTGGGGTTTTTTAAAGTTCGAAATTAGAGATAGTTCCCCATTTAAAAAATTTGTTTTTTTTTTCAAATTCTCTAGGCCATTAAAATTTTTCTGGTCATTTTGATTTTTCTAGGCCATCTCAAATGTTCTAGGCTACTTTAAATTTTTTGGCTACTTTTAATTTTCTCATCCGTTTCGAGATTTCTAGGCGATTCGGGATTTTCTCGGCCATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGACTAATTTGAGTTTTCTAGGCCATTTATTATTTTCTAGGCCAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGYCATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAAATTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCCTAGAAATACTGGTATGGCCTAGATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAATAGCCTAGAAAATTCAAAACAGCTTAGAGGATGCAAAATGGCCTAAAAAATTCATAATGGCCTGCCTAAAGTTCAGAATTCTTAGAATTCTAGATCCTTCCTTTTCCAGAAAATTTTCTACTACTAAATACTTTCTCGGAAAAAGAAAAAAGTAAATTGAATCACTTTTGAGGTATTGAAGGTGGCCTAATCCGTTCGGACGAGAAGGACACACATATGAAGAATGGGGAAAAGAAGAAAAAGTAGAAGAAGAACAAGAGAAGATTAAGAAAGAGAAAAGGATCTCGGGTGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCGAGTTTTCTAGCTCAT</pcr_primer_p1>
		<pcr_primer_p2>TATTAAAACATTCGAAACATCCT</pcr_primer_p2>
		<pcr_amplicon_size>225</pcr_amplicon_size>
		<canonical_amplicon>ATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGACTAATTTGAGTTTTCTAGGCCATTTATTATTTTCTAGGCCAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGTCATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATA</canonical_amplicon>
		<polymorphic_amplicon>ATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGACTAATTTGAGTTTTCTAGGCCATTTATTATTTTCTAGGCCAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGYCATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35824</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>336339</contig_pos>
        <strand></strand>
        <context>ggcctagaaa[A/G]ttcaaaatga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGATGTTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAA</left_flank>
        <right_flank>TTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAGTTTTTTCCTTTCTTGGGGGAAAATTGAAGATTTTGGGGTTTTTTAAAGTTCGAAATTAGAGATAGTTCCCCATTTAAAAAATTTGTTTTTTTTTTCAAATTCTCTAGGCCATTAAAATTTTTCTGGTCATTTTGATTTTTCTAGGCCATCTCAAATGTTCTAGGCTACTTTAAATTTTTTGGCTACTTTTAATTTTCTCATCCGTTTCGAGATTTCTAGGCGATTCGGGATTTTCTCGGCCATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGACTAATTTGAGTTTTCTAGGCCATTTATTATTTTCTAGGCCAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGTCATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAAATTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCCTAGAAATACTGGTATGGCCTAGATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAATAGCCTAGAAAATTCAAAACAGCTTAGAGGATGCAAAATGGCCTAAAAAATTCATAATGGCCTGCCTAAAGTTCAGAATTCTTAGAATTCTAGATCCTTCCTTTTCCAGAAAATTTTCTACTACTAAATACTTTCTCGGAAAAAGAAAAAAGTAAATTGAATCACTTTTGAGGTATTGAAGGTGGCCTAATCCGTTCGGACGAGAAGGACACACATATGAAGAATGGGGAAAAGAAGAAAAAGTAGAAGAAGAACAAGAGAAGATTAAGAAAGAGAAAAGGATCTCGGGTGGCGAAAAGAAACCACTTTTCGGCGGACGGATTTGTTGTGGAAATAGCAAAAGCCGTCGAAGAATTGTAAATGAGAGAAACATGAAAAA</canonical>
            <polymorphic>TTTAGTTTTTTCCTTTCTTGGGGGAAAATTGAAGATTTTGGGGTTTTTTAAAGTTCGAAATTAGAGATAGTTCCCCATTTAAAAAATTTGTTTTTTTTTTCAAATTCTCTAGGCCATTAAAATTTTTCTGGTCATTTTGATTTTTCTAGGCCATCTCAAATGTTCTAGGCTACTTTAAATTTTTTGGCTACTTTTAATTTTCTCATCCGTTTCGAGATTTCTAGGCGATTCGGGATTTTCTCGGCCATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGACTAATTTGAGTTTTCTAGGCCATTTATTATTTTCTAGGCCAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGTCATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAARTTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCCTAGAAATACTGGTATGGCCTAGATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAATAGCCTAGAAAATTCAAAACAGCTTAGAGGATGCAAAATGGCCTAAAAAATTCATAATGGCCTGCCTAAAGTTCAGAATTCTTAGAATTCTAGATCCTTCCTTTTCCAGAAAATTTTCTACTACTAAATACTTTCTCGGAAAAAGAAAAAAGTAAATTGAATCACTTTTGAGGTATTGAAGGTGGCCTAATCCGTTCGGACGAGAAGGACACACATATGAAGAATGGGGAAAAGAAGAAAAAGTAGAAGAAGAACAAGAGAAGATTAAGAAAGAGAAAAGGATCTCGGGTGGCGAAAAGAAACCACTTTTCGGCGGACGGATTTGTTGTGGAAATAGCAAAAGCCGTCGAAGAATTGTAAATGAGAGAAACATGAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>268 130 114 84 76 58 57 57 38 28 26 19 18 18 9</canonical_bands>
                <polymorphic_bands>268 172 130 84 76 57 57 38 28 26 19 18 18 9</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>198 112 58 57 57 57 44 43 38 38 32 32 28 27 26 26 26 19 18 18 18 13 9 6</canonical_bands>
                <polymorphic_bands>198 112 102 57 57 57 43 38 38 32 32 28 27 26 26 26 19 18 18 18 13 9 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTAGGCCTTTTCGAATTT</pcr_primer_p1>
		<pcr_primer_p2>CATCCTCTAAGCTGTTTTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>TTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAAATTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCCTAGAAATACTGGTATGGCCTAGATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAATAGCCTAGAAAATTCAAAACAGCTTAGAGGATG</canonical_amplicon>
		<polymorphic_amplicon>TTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAARTTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCCTAGAAATACTGGTATGGCCTAGATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAATAGCCTAGAAAATTCAAAACAGCTTAGAGGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35825</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>336462</contig_pos>
        <strand></strand>
        <context>aatttgaaat[A/G]gcctagaaAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAAT</left_flank>
        <right_flank>GCCTAGAAAATTCAAAACAGCTTAGAGGATGCAAAATGGCCTAAAAAATT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCTGGTCATTTTGATTTTTCTAGGCCATCTCAAATGTTCTAGGCTACTTTAAATTTTTTGGCTACTTTTAATTTTCTCATCCGTTTCGAGATTTCTAGGCGATTCGGGATTTTCTCGGCCATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGACTAATTTGAGTTTTCTAGGCCATTTATTATTTTCTAGGCCAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGTCATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAAATTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCCTAGAAATACTGGTATGGCCTAGATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAATAGCCTAGAAAATTCAAAACAGCTTAGAGGATGCAAAATGGCCTAAAAAATTCATAATGGCCTGCCTAAAGTTCAGAATTCTTAGAATTCTAGATCCTTCCTTTTCCAGAAAATTTTCTACTACTAAATACTTTCTCGGAAAAAGAAAAAAGTAAATTGAATCACTTTTGAGGTATTGAAGGTGGCCTAATCCGTTCGGACGAGAAGGACACACATATGAAGAATGGGGAAAAGAAGAAAAAGTAGAAGAAGAACAAGAGAAGATTAAGAAAGAGAAAAGGATCTCGGGTGGCGAAAAGAAACCACTTTTCGGCGGACGGATTTGTTGTGGAAATAGCAAAAGCCGTCGAAGAATTGTAAATGAGAGAAACATGAAAAAAGAAGAAAAAGTTTTAAAAGTTTCGGGTAGAGTCGAAAAGCCTCTGACTATTTAATTGTTGGGGATTTTCGGTTTTTTTGGTTTCAAATGGCAGAAAATGAAAAATCACAAAACCTCAGAAAA</canonical>
            <polymorphic>TTTTCTGGTCATTTTGATTTTTCTAGGCCATCTCAAATGTTCTAGGCTACTTTAAATTTTTTGGCTACTTTTAATTTTCTCATCCGTTTCGAGATTTCTAGGCGATTCGGGATTTTCTCGGCCATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGACTAATTTGAGTTTTCTAGGCCATTTATTATTTTCTAGGCCAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGTCATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAAATTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCCTAGAAATACTGGTATGGCCTAGATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAATRGCCTAGAAAATTCAAAACAGCTTAGAGGATGCAAAATGGCCTAAAAAATTCATAATGGCCTGCCTAAAGTTCAGAATTCTTAGAATTCTAGATCCTTCCTTTTCCAGAAAATTTTCTACTACTAAATACTTTCTCGGAAAAAGAAAAAAGTAAATTGAATCACTTTTGAGGTATTGAAGGTGGCCTAATCCGTTCGGACGAGAAGGACACACATATGAAGAATGGGGAAAAGAAGAAAAAGTAGAAGAAGAACAAGAGAAGATTAAGAAAGAGAAAAGGATCTCGGGTGGCGAAAAGAAACCACTTTTCGGCGGACGGATTTGTTGTGGAAATAGCAAAAGCCGTCGAAGAATTGTAAATGAGAGAAACATGAAAAAAGAAGAAAAAGTTTTAAAAGTTTCGGGTAGAGTCGAAAAGCCTCTGACTATTTAATTGTTGGGGATTTTCGGTTTTTTTGGTTTCAAATGGCAGAAAATGAAAAATCACAAAACCTCAGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>158 125 83 76 59 57 57 39 38 38 35 27 20 19 19 19 19 19 19 19 19 18 18</canonical_bands>
                <polymorphic_bands>158 125 83 76 59 57 57 39 38 38 38 35 27 20 19 19 19 19 19 19 18 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCGAATGTTTTAATAGTACAGAA</pcr_primer_p1>
		<pcr_primer_p2>TTCTGGAAAAGGAAGGATCTA</pcr_primer_p2>
		<pcr_amplicon_size>278</pcr_amplicon_size>
		<canonical_amplicon>TTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAAATTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCCTAGAAATACTGGTATGGCCTAGATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAATAGCCTAGAAAATTCAAAACAGCTTAGAGGATGCAAAATGGCCTAAAAAATTCATAATGGCCTGCCTAAAGTTCAGAATTCTTAGAATTCTAGATCCTTCCTTTTCCAGAA</canonical_amplicon>
		<polymorphic_amplicon>TTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAAATTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCCTAGAAATACTGGTATGGCCTAGATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAATRGCCTAGAAAATTCAAAACAGCTTAGAGGATGCAAAATGGCCTAAAAAATTCATAATGGCCTGCCTAAAGTTCAGAATTCTTAGAATTCTAGATCCTTCCTTTTCCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35826</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>336506</contig_pos>
        <strand>+</strand>
        <context>AAATGGCCTA[A/G]AAAATTCATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAATAGCCTAGAAAATTCAAAACAGCTTAGAGGATGCAAAATGGCCTA</left_flank>
        <right_flank>AAAATTCATAATGGCCTGCCTAAAGTTCAGAATTCTTAGAATTCTAGATC</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTACTTTAAATTTTTTGGCTACTTTTAATTTTCTCATCCGTTTCGAGATTTCTAGGCGATTCGGGATTTTCTCGGCCATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGACTAATTTGAGTTTTCTAGGCCATTTATTATTTTCTAGGCCAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGTCATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAAATTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCCTAGAAATACTGGTATGGCCTAGATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAATAGCCTAGAAAATTCAAAACAGCTTAGAGGATGCAAAATGGCCTAAAAAATTCATAATGGCCTGCCTAAAGTTCAGAATTCTTAGAATTCTAGATCCTTCCTTTTCCAGAAAATTTTCTACTACTAAATACTTTCTCGGAAAAAGAAAAAAGTAAATTGAATCACTTTTGAGGTATTGAAGGTGGCCTAATCCGTTCGGACGAGAAGGACACACATATGAAGAATGGGGAAAAGAAGAAAAAGTAGAAGAAGAACAAGAGAAGATTAAGAAAGAGAAAAGGATCTCGGGTGGCGAAAAGAAACCACTTTTCGGCGGACGGATTTGTTGTGGAAATAGCAAAAGCCGTCGAAGAATTGTAAATGAGAGAAACATGAAAAAAGAAGAAAAAGTTTTAAAAGTTTCGGGTAGAGTCGAAAAGCCTCTGACTATTTAATTGTTGGGGATTTTCGGTTTTTTTGGTTTCAAATGGCAGAAAATGAAAAATCACAAAACCTCAGAAAATCGAAAAGAAAAAAAATCCCTCGGAATGTGAAACACATGTGAGG</canonical>
            <polymorphic>GGCTACTTTAAATTTTTTGGCTACTTTTAATTTTCTCATCCGTTTCGAGATTTCTAGGCGATTCGGGATTTTCTCGGCCATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGACTAATTTGAGTTTTCTAGGCCATTTATTATTTTCTAGGCCAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGTCATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAAATTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCCTAGAAATACTGGTATGGCCTAGATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAATAGCCTAGAAAATTCAAAACAGCTTAGAGGATGCAAAATGGCCTARAAAATTCATAATGGCCTGCCTAAAGTTCAGAATTCTTAGAATTCTAGATCCTTCCTTTTCCAGAAAATTTTCTACTACTAAATACTTTCTCGGAAAAAGAAAAAAGTAAATTGAATCACTTTTGAGGTATTGAAGGTGGCCTAATCCGTTCGGACGAGAAGGACACACATATGAAGAATGGGGAAAAGAAGAAAAAGTAGAAGAAGAACAAGAGAAGATTAAGAAAGAGAAAAGGATCTCGGGTGGCGAAAAGAAACCACTTTTCGGCGGACGGATTTGTTGTGGAAATAGCAAAAGCCGTCGAAGAATTGTAAATGAGAGAAACATGAAAAAAGAAGAAAAAGTTTTAAAAGTTTCGGGTAGAGTCGAAAAGCCTCTGACTATTTAATTGTTGGGGATTTTCGGTTTTTTTGGTTTCAAATGGCAGAAAATGAAAAATCACAAAACCTCAGAAAATCGAAAAGAAAAAAAATCCCTCGGAATGTGAAACACATGTGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCGAATGTTTTAATAGTACAGAA</pcr_primer_p1>
		<pcr_primer_p2>TTCTGGAAAAGGAAGGATCTA</pcr_primer_p2>
		<pcr_amplicon_size>278</pcr_amplicon_size>
		<canonical_amplicon>TTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAAATTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCCTAGAAATACTGGTATGGCCTAGATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAATAGCCTAGAAAATTCAAAACAGCTTAGAGGATGCAAAATGGCCTAAAAAATTCATAATGGCCTGCCTAAAGTTCAGAATTCTTAGAATTCTAGATCCTTCCTTTTCCAGAA</canonical_amplicon>
		<polymorphic_amplicon>TTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAAATTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCCTAGAAATACTGGTATGGCCTAGATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAATAGCCTAGAAAATTCAAAACAGCTTAGAGGATGCAAAATGGCCTARAAAATTCATAATGGCCTGCCTAAAGTTCAGAATTCTTAGAATTCTAGATCCTTCCTTTTCCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35827</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>336522</contig_pos>
        <strand>+</strand>
        <context>TCATAATGGC[C/T]TGCCTAAAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCAAAACAGCTTAGAGGATGCAAAATGGCCTAAAAAATTCATAATGGC</left_flank>
        <right_flank>TGCCTAAAGTTCAGAATTCTTAGAATTCTAGATCCTTCCTTTTCCAGAAA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGCTACTTTTAATTTTCTCATCCGTTTCGAGATTTCTAGGCGATTCGGGATTTTCTCGGCCATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGACTAATTTGAGTTTTCTAGGCCATTTATTATTTTCTAGGCCAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGTCATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAAATTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCCTAGAAATACTGGTATGGCCTAGATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAATAGCCTAGAAAATTCAAAACAGCTTAGAGGATGCAAAATGGCCTAAAAAATTCATAATGGCCTGCCTAAAGTTCAGAATTCTTAGAATTCTAGATCCTTCCTTTTCCAGAAAATTTTCTACTACTAAATACTTTCTCGGAAAAAGAAAAAAGTAAATTGAATCACTTTTGAGGTATTGAAGGTGGCCTAATCCGTTCGGACGAGAAGGACACACATATGAAGAATGGGGAAAAGAAGAAAAAGTAGAAGAAGAACAAGAGAAGATTAAGAAAGAGAAAAGGATCTCGGGTGGCGAAAAGAAACCACTTTTCGGCGGACGGATTTGTTGTGGAAATAGCAAAAGCCGTCGAAGAATTGTAAATGAGAGAAACATGAAAAAAGAAGAAAAAGTTTTAAAAGTTTCGGGTAGAGTCGAAAAGCCTCTGACTATTTAATTGTTGGGGATTTTCGGTTTTTTTGGTTTCAAATGGCAGAAAATGAAAAATCACAAAACCTCAGAAAATCGAAAAGAAAAAAAATCCCTCGGAATGTGAAACACATGTGAGGGGATTAGTCATCTGGG</canonical>
            <polymorphic>TTGGCTACTTTTAATTTTCTCATCCGTTTCGAGATTTCTAGGCGATTCGGGATTTTCTCGGCCATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGACTAATTTGAGTTTTCTAGGCCATTTATTATTTTCTAGGCCAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGTCATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAAATTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCCTAGAAATACTGGTATGGCCTAGATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAATAGCCTAGAAAATTCAAAACAGCTTAGAGGATGCAAAATGGCCTAAAAAATTCATAATGGCYTGCCTAAAGTTCAGAATTCTTAGAATTCTAGATCCTTCCTTTTCCAGAAAATTTTCTACTACTAAATACTTTCTCGGAAAAAGAAAAAAGTAAATTGAATCACTTTTGAGGTATTGAAGGTGGCCTAATCCGTTCGGACGAGAAGGACACACATATGAAGAATGGGGAAAAGAAGAAAAAGTAGAAGAAGAACAAGAGAAGATTAAGAAAGAGAAAAGGATCTCGGGTGGCGAAAAGAAACCACTTTTCGGCGGACGGATTTGTTGTGGAAATAGCAAAAGCCGTCGAAGAATTGTAAATGAGAGAAACATGAAAAAAGAAGAAAAAGTTTTAAAAGTTTCGGGTAGAGTCGAAAAGCCTCTGACTATTTAATTGTTGGGGATTTTCGGTTTTTTTGGTTTCAAATGGCAGAAAATGAAAAATCACAAAACCTCAGAAAATCGAAAAGAAAAAAAATCCCTCGGAATGTGAAACACATGTGAGGGGATTAGTCATCTGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>377 125 74 61 59 57 57 38 38 38 19 19 19 19</canonical_bands>
                <polymorphic_bands>377 144 74 61 59 57 57 38 38 38 19 19 19</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>158 143 125 76 59 57 57 39 38 38 35 20 19 19 19 19 19 19 19 18 4</canonical_bands>
                <polymorphic_bands>158 144 143 76 59 57 57 39 38 38 35 20 19 19 19 19 19 19 18 4</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>377 125 99 74 59 57 57 38 38 19 19 19 19</canonical_bands>
                <polymorphic_bands>377 144 99 74 59 57 57 38 38 19 19 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCGAATGTTTTAATAGTACAGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTGGAAAAGGAAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>280</pcr_amplicon_size>
		<canonical_amplicon>TTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAAATTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCCTAGAAATACTGGTATGGCCTAGATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAATAGCCTAGAAAATTCAAAACAGCTTAGAGGATGCAAAATGGCCTAAAAAATTCATAATGGCCTGCCTAAAGTTCAGAATTCTTAGAATTCTAGATCCTTCCTTTTCCAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAAATTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCCTAGAAATACTGGTATGGCCTAGATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAATAGCCTAGAAAATTCAAAACAGCTTAGAGGATGCAAAATGGCCTAAAAAATTCATAATGGCYTGCCTAAAGTTCAGAATTCTTAGAATTCTAGATCCTTCCTTTTCCAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35828</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>336540</contig_pos>
        <strand>+</strand>
        <context>AGTTCAGAAT[C/T]CYTAGAATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATGCAAAATGGCCTAAAAAATTCATAATGGCCTGCCTAAAGTTCAGAAT</left_flank>
        <right_flank>CTTAGAATTCTAGATCCTTCCTTTTCCAGAAAATTTTCTACTACTAAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCATCCGTTTCGAGATTTCTAGGCGATTCGGGATTTTCTCGGCCATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGACTAATTTGAGTTTTCTAGGCCATTTATTATTTTCTAGGCCAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGTCATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAAATTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCCTAGAAATACTGGTATGGCCTAGATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAATAGCCTAGAAAATTCAAAACAGCTTAGAGGATGCAAAATGGCCTAAAAAATTCATAATGGCCTGCCTAAAGTTCAGAATTCTTAGAATTCTAGATCCTTCCTTTTCCAGAAAATTTTCTACTACTAAATACTTTCTCGGAAAAAGAAAAAAGTAAATTGAATCACTTTTGAGGTATTGAAGGTGGCCTAATCCGTTCGGACGAGAAGGACACACATATGAAGAATGGGGAAAAGAAGAAAAAGTAGAAGAAGAACAAGAGAAGATTAAGAAAGAGAAAAGGATCTCGGGTGGCGAAAAGAAACCACTTTTCGGCGGACGGATTTGTTGTGGAAATAGCAAAAGCCGTCGAAGAATTGTAAATGAGAGAAACATGAAAAAAGAAGAAAAAGTTTTAAAAGTTTCGGGTAGAGTCGAAAAGCCTCTGACTATTTAATTGTTGGGGATTTTCGGTTTTTTTGGTTTCAAATGGCAGAAAATGAAAAATCACAAAACCTCAGAAAATCGAAAAGAAAAAAAATCCCTCGGAATGTGAAACACATGTGAGGGGATTAGTCATCTGGGGTTGATCCAGAACTTTCT</canonical>
            <polymorphic>CTCATCCGTTTCGAGATTTCTAGGCGATTCGGGATTTTCTCGGCCATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGACTAATTTGAGTTTTCTAGGCCATTTATTATTTTCTAGGCCAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGTCATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAAATTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCCTAGAAATACTGGTATGGCCTAGATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAATAGCCTAGAAAATTCAAAACAGCTTAGAGGATGCAAAATGGCCTAAAAAATTCATAATGGCCTGCCTAAAGTTCAGAATYCTTAGAATTCTAGATCCTTCCTTTTCCAGAAAATTTTCTACTACTAAATACTTTCTCGGAAAAAGAAAAAAGTAAATTGAATCACTTTTGAGGTATTGAAGGTGGCCTAATCCGTTCGGACGAGAAGGACACACATATGAAGAATGGGGAAAAGAAGAAAAAGTAGAAGAAGAACAAGAGAAGATTAAGAAAGAGAAAAGGATCTCGGGTGGCGAAAAGAAACCACTTTTCGGCGGACGGATTTGTTGTGGAAATAGCAAAAGCCGTCGAAGAATTGTAAATGAGAGAAACATGAAAAAAGAAGAAAAAGTTTTAAAAGTTTCGGGTAGAGTCGAAAAGCCTCTGACTATTTAATTGTTGGGGATTTTCGGTTTTTTTGGTTTCAAATGGCAGAAAATGAAAAATCACAAAACCTCAGAAAATCGAAAAGAAAAAAAATCCCTCGGAATGTGAAACACATGTGAGGGGATTAGTCATCTGGGGTTGATCCAGAACTTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>469 114 106 76 58 57 38 28 26 19 9</canonical_bands>
                <polymorphic_bands>469 114 106 76 58 57 38 37 26 19</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>496 495 9</canonical_bands>
                <polymorphic_bands>505 495</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>198 148 106 80 58 57 57 44 43 38 38 32 28 26 19 13 9 6</canonical_bands>
                <polymorphic_bands>198 148 106 80 58 57 57 44 43 38 38 37 32 26 19 13 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGCTTAGAGGATGCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTCTTCATATGTGTGTCCTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>206</pcr_amplicon_size>
		<canonical_amplicon>ACAGCTTAGAGGATGCAAAATGGCCTAAAAAATTCATAATGGCCTGCCTAAAGTTCAGAATTCTTAGAATTCTAGATCCTTCCTTTTCCAGAAAATTTTCTACTACTAAATACTTTCTCGGAAAAAGAAAAAAGTAAATTGAATCACTTTTGAGGTATTGAAGGTGGCCTAATCCGTTCGGACGAGAAGGACACACATATGAAGAA</canonical_amplicon>
		<polymorphic_amplicon>ACAGCTTAGAGGATGCAAAATGGCCTAAAAAATTCATAATGGCCTGCCTAAAGTTCAGAATYCTTAGAATTCTAGATCCTTCCTTTTCCAGAAAATTTTCTACTACTAAATACTTTCTCGGAAAAAGAAAAAAGTAAATTGAATCACTTTTGAGGTATTGAAGGTGGCCTAATCCGTTCGGACGAGAAGGACACACATATGAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35829</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>336542</contig_pos>
        <strand>+</strand>
        <context>TTCAGAATYC[C/T]TAGAATTCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCAAAATGGCCTAAAAAATTCATAATGGCCTGCCTAAAGTTCAGAATTC</left_flank>
        <right_flank>TAGAATTCTAGATCCTTCCTTTTCCAGAAAATTTTCTACTACTAAATACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCCGTTTCGAGATTTCTAGGCGATTCGGGATTTTCTCGGCCATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGACTAATTTGAGTTTTCTAGGCCATTTATTATTTTCTAGGCCAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGTCATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAAATTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCCTAGAAATACTGGTATGGCCTAGATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAATAGCCTAGAAAATTCAAAACAGCTTAGAGGATGCAAAATGGCCTAAAAAATTCATAATGGCCTGCCTAAAGTTCAGAATTCTTAGAATTCTAGATCCTTCCTTTTCCAGAAAATTTTCTACTACTAAATACTTTCTCGGAAAAAGAAAAAAGTAAATTGAATCACTTTTGAGGTATTGAAGGTGGCCTAATCCGTTCGGACGAGAAGGACACACATATGAAGAATGGGGAAAAGAAGAAAAAGTAGAAGAAGAACAAGAGAAGATTAAGAAAGAGAAAAGGATCTCGGGTGGCGAAAAGAAACCACTTTTCGGCGGACGGATTTGTTGTGGAAATAGCAAAAGCCGTCGAAGAATTGTAAATGAGAGAAACATGAAAAAAGAAGAAAAAGTTTTAAAAGTTTCGGGTAGAGTCGAAAAGCCTCTGACTATTTAATTGTTGGGGATTTTCGGTTTTTTTGGTTTCAAATGGCAGAAAATGAAAAATCACAAAACCTCAGAAAATCGAAAAGAAAAAAAATCCCTCGGAATGTGAAACACATGTGAGGGGATTAGTCATCTGGGGTTGATCCAGAACTTTCTGG</canonical>
            <polymorphic>CATCCGTTTCGAGATTTCTAGGCGATTCGGGATTTTCTCGGCCATTCCGAGTTTTCTAGCTCATTTTGAATATTCTAGGCCATTCCGGATTCTAGGTCATTTCGAATTTTCTAGCCCATTTTGACTTTTTTAGACTAATTTGAGTTTTCTAGGCCATTTATTATTTTCTAGGCCAATTGGAATTTTCTAGGCCATTCCTGATTTTCTAGGTCATTCCCAGGTTTCTAGGCCTTTTCGAATTTCCCAGGATGTTTCGAATGTTTTAATAGTACAGAAGCATCAAAATGGCCTAGAAAATTCAAAATGATCTAGAAAAATCGAAAACGCCCAGAAAACGAAAATTGGCCTAGAAATACTGGTATGGCCTAGATAGTTAAAAAAGGTTTGGAAAATCCAAATTGGCCTAGAAAATTTGAAATAGCCTAGAAAATTCAAAACAGCTTAGAGGATGCAAAATGGCCTAAAAAATTCATAATGGCCTGCCTAAAGTTCAGAATTCYTAGAATTCTAGATCCTTCCTTTTCCAGAAAATTTTCTACTACTAAATACTTTCTCGGAAAAAGAAAAAAGTAAATTGAATCACTTTTGAGGTATTGAAGGTGGCCTAATCCGTTCGGACGAGAAGGACACACATATGAAGAATGGGGAAAAGAAGAAAAAGTAGAAGAAGAACAAGAGAAGATTAAGAAAGAGAAAAGGATCTCGGGTGGCGAAAAGAAACCACTTTTCGGCGGACGGATTTGTTGTGGAAATAGCAAAAGCCGTCGAAGAATTGTAAATGAGAGAAACATGAAAAAAGAAGAAAAAGTTTTAAAAGTTTCGGGTAGAGTCGAAAAGCCTCTGACTATTTAATTGTTGGGGATTTTCGGTTTTTTTGGTTTCAAATGGCAGAAAATGAAAAATCACAAAACCTCAGAAAATCGAAAAGAAAAAAAATCCCTCGGAATGTGAAACACATGTGAGGGGATTAGTCATCTGGGGTTGATCCAGAACTTTCTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>441 413 88 58</canonical_bands>
                <polymorphic_bands>471 441 88</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGCTTAGAGGATGCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTCTTCATATGTGTGTCCTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>206</pcr_amplicon_size>
		<canonical_amplicon>ACAGCTTAGAGGATGCAAAATGGCCTAAAAAATTCATAATGGCCTGCCTAAAGTTCAGAATTCTTAGAATTCTAGATCCTTCCTTTTCCAGAAAATTTTCTACTACTAAATACTTTCTCGGAAAAAGAAAAAAGTAAATTGAATCACTTTTGAGGTATTGAAGGTGGCCTAATCCGTTCGGACGAGAAGGACACACATATGAAGAA</canonical_amplicon>
		<polymorphic_amplicon>ACAGCTTAGAGGATGCAAAATGGCCTAAAAAATTCATAATGGCCTGCCTAAAGTTCAGAATTCYTAGAATTCTAGATCCTTCCTTTTCCAGAAAATTTTCTACTACTAAATACTTTCTCGGAAAAAGAAAAAAGTAAATTGAATCACTTTTGAGGTATTGAAGGTGGCCTAATCCGTTCGGACGAGAAGGACACACATATGAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35830</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>338338</contig_pos>
        <strand>+</strand>
        <context>TTGACAGTTT[C/T]CTTGAAAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATAAAATATCAAACAATGTTGTCGAGAAAACTGGAACTGTTGACAGTTT</left_flank>
        <right_flank>CTTGAAAAAGGGATGAAGTGTAAAAAAAAACGAAAAGACGATGAAGATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAACAGTTTAAAAACATTTAAAAAAAATGGCAAAAGCCGGACTATCAGTAAATCGGAAATTCGGAAGTTTAAATAAAAAGAGCCCTGTTAACTTTGACTCAATTTATCTCAGTTCCTATAAGAAGTATCAAAAAATGATTAACAAACAAAACGTTTATCATAATGTCAATAATATTTTATCAGTGGACCACTTTTTGATGTTTTGCACAGGAACCGAGATAACGGAGAACAAAGAAAGTTGAGGTGGAGTACCGGTCTACTTTGACTCAGTTTTTCTCAGTTCCAGTGAAAGATATTGAAAAATAATCAACTAACAAAATATTTATCACAAAGTCACCAATATTTTATCAGTTGACAAAGTTTTGATATCTTTTACAGGAACCGAAATAAACTGAGTTAAATTAACTACAACAGTACCTCAAAAAATAACTATTTTTAGCCAAAATGAAATAAAATATCAAACAATGTTGTCGAGAAAACTGGAACTGTTGACAGTTTTCTTGAAAAAGGGATGAAGTGTAAAAAAAAACGAAAAGACGATGAAGATAACGATCAAGCATCTTCCTATTTCTCGAGACTACACGAAAGGGTGTTTGTTTGAAATTTCAGAGAAATGGAGATTTTGATTTCGATTAGCGATACTGAAAGAATTATAAAAAAAAAGAGACAAGGTTAATGAAAAGGAAAAGAAGAAGAAGAATGATGATGATTTGCAGAGAAAGAGAAAAAAGTTTAAAGAGAGAGGTCACCGAATTTCAAAAAAATTTTGAGGAGAATAAGTCAAGTGGAAGAGATAGGAGATTCGGTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAACATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGA</canonical>
            <polymorphic>GGAACAGTTTAAAAACATTTAAAAAAAATGGCAAAAGCCGGACTATCAGTAAATCGGAAATTCGGAAGTTTAAATAAAAAGAGCCCTGTTAACTTTGACTCAATTTATCTCAGTTCCTATAAGAAGTATCAAAAAATGATTAACAAACAAAACGTTTATCATAATGTCAATAATATTTTATCAGTGGACCACTTTTTGATGTTTTGCACAGGAACCGAGATAACGGAGAACAAAGAAAGTTGAGGTGGAGTACCGGTCTACTTTGACTCAGTTTTTCTCAGTTCCAGTGAAAGATATTGAAAAATAATCAACTAACAAAATATTTATCACAAAGTCACCAATATTTTATCAGTTGACAAAGTTTTGATATCTTTTACAGGAACCGAAATAAACTGAGTTAAATTAACTACAACAGTACCTCAAAAAATAACTATTTTTAGCCAAAATGAAATAAAATATCAAACAATGTTGTCGAGAAAACTGGAACTGTTGACAGTTTYCTTGAAAAAGGGATGAAGTGTAAAAAAAAACGAAAAGACGATGAAGATAACGATCAAGCATCTTCCTATTTCTCGAGACTACACGAAAGGGTGTTTGTTTGAAATTTCAGAGAAATGGAGATTTTGATTTCGATTAGCGATACTGAAAGAATTATAAAAAAAAAGAGACAAGGTTAATGAAAAGGAAAAGAAGAAGAAGAATGATGATGATTTGCAGAGAAAGAGAAAAAAGTTTAAAGAGAGAGGTCACCGAATTTCAAAAAAATTTTGAGGAGAATAAGTCAAGTGGAAGAGATAGGAGATTCGGTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAACATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>473 428 71 28</canonical_bands>
                <polymorphic_bands>473 428 99</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCAAAATGAAATAAAATATCAA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTCCTTTTCATTAACCTTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCCAAAATGAAATAAAATATCAAACAATGTTGTCGAGAAAACTGGAACTGTTGACAGTTTTCTTGAAAAAGGGATGAAGTGTAAAAAAAAACGAAAAGACGATGAAGATAACGATCAAGCATCTTCCTATTTCTCGAGACTACACGAAAGGGTGTTTGTTTGAAATTTCAGAGAAATGGAGATTTTGATTTCGATTAGCGATACTGAAAGAATTATAAAAAAAAAGAGACAAGGTTAATGAAAAGGAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GCCAAAATGAAATAAAATATCAAACAATGTTGTCGAGAAAACTGGAACTGTTGACAGTTTYCTTGAAAAAGGGATGAAGTGTAAAAAAAAACGAAAAGACGATGAAGATAACGATCAAGCATCTTCCTATTTCTCGAGACTACACGAAAGGGTGTTTGTTTGAAATTTCAGAGAAATGGAGATTTTGATTTCGATTAGCGATACTGAAAGAATTATAAAAAAAAAGAGACAAGGTTAATGAAAAGGAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35831</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>338451</contig_pos>
        <strand>+</strand>
        <context>AATTTCAGAG[A/T]AATGGAGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCCTATTTCTCGAGACTACACGAAAGGGTGTTTGTTTGAAATTTCAGAG</left_flank>
        <right_flank>AATGGAGATTTTGATTTCGATTAGCGATACTGAAAGAATTATAAAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCTATAAGAAGTATCAAAAAATGATTAACAAACAAAACGTTTATCATAATGTCAATAATATTTTATCAGTGGACCACTTTTTGATGTTTTGCACAGGAACCGAGATAACGGAGAACAAAGAAAGTTGAGGTGGAGTACCGGTCTACTTTGACTCAGTTTTTCTCAGTTCCAGTGAAAGATATTGAAAAATAATCAACTAACAAAATATTTATCACAAAGTCACCAATATTTTATCAGTTGACAAAGTTTTGATATCTTTTACAGGAACCGAAATAAACTGAGTTAAATTAACTACAACAGTACCTCAAAAAATAACTATTTTTAGCCAAAATGAAATAAAATATCAAACAATGTTGTCGAGAAAACTGGAACTGTTGACAGTTTTCTTGAAAAAGGGATGAAGTGTAAAAAAAAACGAAAAGACGATGAAGATAACGATCAAGCATCTTCCTATTTCTCGAGACTACACGAAAGGGTGTTTGTTTGAAATTTCAGAGAAATGGAGATTTTGATTTCGATTAGCGATACTGAAAGAATTATAAAAAAAAAGAGACAAGGTTAATGAAAAGGAAAAGAAGAAGAAGAATGATGATGATTTGCAGAGAAAGAGAAAAAAGTTTAAAGAGAGAGGTCACCGAATTTCAAAAAAATTTTGAGGAGAATAAGTCAAGTGGAAGAGATAGGAGATTCGGTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAACATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGT</canonical>
            <polymorphic>TTCCTATAAGAAGTATCAAAAAATGATTAACAAACAAAACGTTTATCATAATGTCAATAATATTTTATCAGTGGACCACTTTTTGATGTTTTGCACAGGAACCGAGATAACGGAGAACAAAGAAAGTTGAGGTGGAGTACCGGTCTACTTTGACTCAGTTTTTCTCAGTTCCAGTGAAAGATATTGAAAAATAATCAACTAACAAAATATTTATCACAAAGTCACCAATATTTTATCAGTTGACAAAGTTTTGATATCTTTTACAGGAACCGAAATAAACTGAGTTAAATTAACTACAACAGTACCTCAAAAAATAACTATTTTTAGCCAAAATGAAATAAAATATCAAACAATGTTGTCGAGAAAACTGGAACTGTTGACAGTTTTCTTGAAAAAGGGATGAAGTGTAAAAAAAAACGAAAAGACGATGAAGATAACGATCAAGCATCTTCCTATTTCTCGAGACTACACGAAAGGGTGTTTGTTTGAAATTTCAGAGWAATGGAGATTTTGATTTCGATTAGCGATACTGAAAGAATTATAAAAAAAAAGAGACAAGGTTAATGAAAAGGAAAAGAAGAAGAAGAATGATGATGATTTGCAGAGAAAGAGAAAAAAGTTTAAAGAGAGAGGTCACCGAATTTCAAAAAAATTTTGAGGAGAATAAGTCAAGTGGAAGAGATAGGAGATTCGGTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAACATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCAAAATGAAATAAAATATCAA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTCCTTTTCATTAACCTTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCCAAAATGAAATAAAATATCAAACAATGTTGTCGAGAAAACTGGAACTGTTGACAGTTTTCTTGAAAAAGGGATGAAGTGTAAAAAAAAACGAAAAGACGATGAAGATAACGATCAAGCATCTTCCTATTTCTCGAGACTACACGAAAGGGTGTTTGTTTGAAATTTCAGAGAAATGGAGATTTTGATTTCGATTAGCGATACTGAAAGAATTATAAAAAAAAAGAGACAAGGTTAATGAAAAGGAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GCCAAAATGAAATAAAATATCAAACAATGTTGTCGAGAAAACTGGAACTGTTGACAGTTTTCTTGAAAAAGGGATGAAGTGTAAAAAAAAACGAAAAGACGATGAAGATAACGATCAAGCATCTTCCTATTTCTCGAGACTACACGAAAGGGTGTTTGTTTGAAATTTCAGAGWAATGGAGATTTTGATTTCGATTAGCGATACTGAAAGAATTATAAAAAAAAAGAGACAAGGTTAATGAAAAGGAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35832</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>338693</contig_pos>
        <strand></strand>
        <context>aaaaaaaaaa[A/C]aywttttttG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGGTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAA</left_flank>
        <right_flank>ACATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAAGTTTTGATATCTTTTACAGGAACCGAAATAAACTGAGTTAAATTAACTACAACAGTACCTCAAAAAATAACTATTTTTAGCCAAAATGAAATAAAATATCAAACAATGTTGTCGAGAAAACTGGAACTGTTGACAGTTTTCTTGAAAAAGGGATGAAGTGTAAAAAAAAACGAAAAGACGATGAAGATAACGATCAAGCATCTTCCTATTTCTCGAGACTACACGAAAGGGTGTTTGTTTGAAATTTCAGAGAAATGGAGATTTTGATTTCGATTAGCGATACTGAAAGAATTATAAAAAAAAAGAGACAAGGTTAATGAAAAGGAAAAGAAGAAGAAGAATGATGATGATTTGCAGAGAAAGAGAAAAAAGTTTAAAGAGAGAGGTCACCGAATTTCAAAAAAATTTTGAGGAGAATAAGTCAAGTGGAAGAGATAGGAGATTCGGTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAACATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGTTCGCTGGAAAAGAATTTAAAAGTGCGAATTCGCTCTATTGAGATATCTTACCCGCACTTCTACACAGGTGATTCGCGAACAATCCGTTATGGACTCTCCGCGTTCGCGCGCGGTGGAAATAGGAATCGTATGCGGACCGTACGCGAACCGTTTCCAGCAAAACACAACACATTATTGCGGGTTTCTCCGTATTCTGTCCGTGAACTCCGTATCCGATCCGACC</canonical>
            <polymorphic>ACAAAGTTTTGATATCTTTTACAGGAACCGAAATAAACTGAGTTAAATTAACTACAACAGTACCTCAAAAAATAACTATTTTTAGCCAAAATGAAATAAAATATCAAACAATGTTGTCGAGAAAACTGGAACTGTTGACAGTTTTCTTGAAAAAGGGATGAAGTGTAAAAAAAAACGAAAAGACGATGAAGATAACGATCAAGCATCTTCCTATTTCTCGAGACTACACGAAAGGGTGTTTGTTTGAAATTTCAGAGAAATGGAGATTTTGATTTCGATTAGCGATACTGAAAGAATTATAAAAAAAAAGAGACAAGGTTAATGAAAAGGAAAAGAAGAAGAAGAATGATGATGATTTGCAGAGAAAGAGAAAAAAGTTTAAAGAGAGAGGTCACCGAATTTCAAAAAAATTTTGAGGAGAATAAGTCAAGTGGAAGAGATAGGAGATTCGGTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAMACATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGTTCGCTGGAAAAGAATTTAAAAGTGCGAATTCGCTCTATTGAGATATCTTACCCGCACTTCTACACAGGTGATTCGCGAACAATCCGTTATGGACTCTCCGCGTTCGCGCGCGGTGGAAATAGGAATCGTATGCGGACCGTACGCGAACCGTTTCCAGCAAAACACAACACATTATTGCGGGTTTCTCCGTATTCTGTCCGTGAACTCCGTATCCGATCCGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAGACAAGGTTAATGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGCCGCTACTTAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAGACAAGGTTAATGAAAAGGAAAAGAAGAAGAAGAATGATGATGATTTGCAGAGAAAGAGAAAAAAGTTTAAAGAGAGAGGTCACCGAATTTCAAAAAAATTTTGAGGAGAATAAGTCAAGTGGAAGAGATAGGAGATTCGGTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAACATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAGACAAGGTTAATGAAAAGGAAAAGAAGAAGAAGAATGATGATGATTTGCAGAGAAAGAGAAAAAAGTTTAAAGAGAGAGGTCACCGAATTTCAAAAAAATTTTGAGGAGAATAAGTCAAGTGGAAGAGATAGGAGATTCGGTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAMACATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35833</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>338695</contig_pos>
        <strand></strand>
        <context>aaaaaaaama[C/T]wttttttGTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAA</left_flank>
        <right_flank>ATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTTTTGATATCTTTTACAGGAACCGAAATAAACTGAGTTAAATTAACTACAACAGTACCTCAAAAAATAACTATTTTTAGCCAAAATGAAATAAAATATCAAACAATGTTGTCGAGAAAACTGGAACTGTTGACAGTTTTCTTGAAAAAGGGATGAAGTGTAAAAAAAAACGAAAAGACGATGAAGATAACGATCAAGCATCTTCCTATTTCTCGAGACTACACGAAAGGGTGTTTGTTTGAAATTTCAGAGAAATGGAGATTTTGATTTCGATTAGCGATACTGAAAGAATTATAAAAAAAAAGAGACAAGGTTAATGAAAAGGAAAAGAAGAAGAAGAATGATGATGATTTGCAGAGAAAGAGAAAAAAGTTTAAAGAGAGAGGTCACCGAATTTCAAAAAAATTTTGAGGAGAATAAGTCAAGTGGAAGAGATAGGAGATTCGGTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAACATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGTTCGCTGGAAAAGAATTTAAAAGTGCGAATTCGCTCTATTGAGATATCTTACCCGCACTTCTACACAGGTGATTCGCGAACAATCCGTTATGGACTCTCCGCGTTCGCGCGCGGTGGAAATAGGAATCGTATGCGGACCGTACGCGAACCGTTTCCAGCAAAACACAACACATTATTGCGGGTTTCTCCGTATTCTGTCCGTGAACTCCGTATCCGATCCGACCGC</canonical>
            <polymorphic>AAAGTTTTGATATCTTTTACAGGAACCGAAATAAACTGAGTTAAATTAACTACAACAGTACCTCAAAAAATAACTATTTTTAGCCAAAATGAAATAAAATATCAAACAATGTTGTCGAGAAAACTGGAACTGTTGACAGTTTTCTTGAAAAAGGGATGAAGTGTAAAAAAAAACGAAAAGACGATGAAGATAACGATCAAGCATCTTCCTATTTCTCGAGACTACACGAAAGGGTGTTTGTTTGAAATTTCAGAGAAATGGAGATTTTGATTTCGATTAGCGATACTGAAAGAATTATAAAAAAAAAGAGACAAGGTTAATGAAAAGGAAAAGAAGAAGAAGAATGATGATGATTTGCAGAGAAAGAGAAAAAAGTTTAAAGAGAGAGGTCACCGAATTTCAAAAAAATTTTGAGGAGAATAAGTCAAGTGGAAGAGATAGGAGATTCGGTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAAYATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGTTCGCTGGAAAAGAATTTAAAAGTGCGAATTCGCTCTATTGAGATATCTTACCCGCACTTCTACACAGGTGATTCGCGAACAATCCGTTATGGACTCTCCGCGTTCGCGCGCGGTGGAAATAGGAATCGTATGCGGACCGTACGCGAACCGTTTCCAGCAAAACACAACACATTATTGCGGGTTTCTCCGTATTCTGTCCGTGAACTCCGTATCCGATCCGACCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAGAAATGGACACCTGAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAAATCCCGGAAATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAACATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAA</canonical_amplicon>
		<polymorphic_amplicon>GTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAAYATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35834</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>338696</contig_pos>
        <strand></strand>
        <context>aaaaaaamay[A/T]ttttttGTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAAC</left_flank>
        <right_flank>TTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTTTGATATCTTTTACAGGAACCGAAATAAACTGAGTTAAATTAACTACAACAGTACCTCAAAAAATAACTATTTTTAGCCAAAATGAAATAAAATATCAAACAATGTTGTCGAGAAAACTGGAACTGTTGACAGTTTTCTTGAAAAAGGGATGAAGTGTAAAAAAAAACGAAAAGACGATGAAGATAACGATCAAGCATCTTCCTATTTCTCGAGACTACACGAAAGGGTGTTTGTTTGAAATTTCAGAGAAATGGAGATTTTGATTTCGATTAGCGATACTGAAAGAATTATAAAAAAAAAGAGACAAGGTTAATGAAAAGGAAAAGAAGAAGAAGAATGATGATGATTTGCAGAGAAAGAGAAAAAAGTTTAAAGAGAGAGGTCACCGAATTTCAAAAAAATTTTGAGGAGAATAAGTCAAGTGGAAGAGATAGGAGATTCGGTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAACATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGTTCGCTGGAAAAGAATTTAAAAGTGCGAATTCGCTCTATTGAGATATCTTACCCGCACTTCTACACAGGTGATTCGCGAACAATCCGTTATGGACTCTCCGCGTTCGCGCGCGGTGGAAATAGGAATCGTATGCGGACCGTACGCGAACCGTTTCCAGCAAAACACAACACATTATTGCGGGTTTCTCCGTATTCTGTCCGTGAACTCCGTATCCGATCCGACCGCG</canonical>
            <polymorphic>AAGTTTTGATATCTTTTACAGGAACCGAAATAAACTGAGTTAAATTAACTACAACAGTACCTCAAAAAATAACTATTTTTAGCCAAAATGAAATAAAATATCAAACAATGTTGTCGAGAAAACTGGAACTGTTGACAGTTTTCTTGAAAAAGGGATGAAGTGTAAAAAAAAACGAAAAGACGATGAAGATAACGATCAAGCATCTTCCTATTTCTCGAGACTACACGAAAGGGTGTTTGTTTGAAATTTCAGAGAAATGGAGATTTTGATTTCGATTAGCGATACTGAAAGAATTATAAAAAAAAAGAGACAAGGTTAATGAAAAGGAAAAGAAGAAGAAGAATGATGATGATTTGCAGAGAAAGAGAAAAAAGTTTAAAGAGAGAGGTCACCGAATTTCAAAAAAATTTTGAGGAGAATAAGTCAAGTGGAAGAGATAGGAGATTCGGTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAACWTTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGTTCGCTGGAAAAGAATTTAAAAGTGCGAATTCGCTCTATTGAGATATCTTACCCGCACTTCTACACAGGTGATTCGCGAACAATCCGTTATGGACTCTCCGCGTTCGCGCGCGGTGGAAATAGGAATCGTATGCGGACCGTACGCGAACCGTTTCCAGCAAAACACAACACATTATTGCGGGTTTCTCCGTATTCTGTCCGTGAACTCCGTATCCGATCCGACCGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAGAAATGGACACCTGAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAAATCCCGGAAATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAACATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAA</canonical_amplicon>
		<polymorphic_amplicon>GTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAACWTTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35835</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>338753</contig_pos>
        <strand>+</strand>
        <context>AAAAGTAGCC[C/T]CGCTCatttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCC</left_flank>
        <right_flank>CGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACCTCAAAAAATAACTATTTTTAGCCAAAATGAAATAAAATATCAAACAATGTTGTCGAGAAAACTGGAACTGTTGACAGTTTTCTTGAAAAAGGGATGAAGTGTAAAAAAAAACGAAAAGACGATGAAGATAACGATCAAGCATCTTCCTATTTCTCGAGACTACACGAAAGGGTGTTTGTTTGAAATTTCAGAGAAATGGAGATTTTGATTTCGATTAGCGATACTGAAAGAATTATAAAAAAAAAGAGACAAGGTTAATGAAAAGGAAAAGAAGAAGAAGAATGATGATGATTTGCAGAGAAAGAGAAAAAAGTTTAAAGAGAGAGGTCACCGAATTTCAAAAAAATTTTGAGGAGAATAAGTCAAGTGGAAGAGATAGGAGATTCGGTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAACATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGTTCGCTGGAAAAGAATTTAAAAGTGCGAATTCGCTCTATTGAGATATCTTACCCGCACTTCTACACAGGTGATTCGCGAACAATCCGTTATGGACTCTCCGCGTTCGCGCGCGGTGGAAATAGGAATCGTATGCGGACCGTACGCGAACCGTTTCCAGCAAAACACAACACATTATTGCGGGTTTCTCCGTATTCTGTCCGTGAACTCCGTATCCGATCCGACCGCGAATGATGAACAAACGGTTCCGTACGCGAATCTGAATTCAATTTGAGATCGCGATAAT</canonical>
            <polymorphic>TACCTCAAAAAATAACTATTTTTAGCCAAAATGAAATAAAATATCAAACAATGTTGTCGAGAAAACTGGAACTGTTGACAGTTTTCTTGAAAAAGGGATGAAGTGTAAAAAAAAACGAAAAGACGATGAAGATAACGATCAAGCATCTTCCTATTTCTCGAGACTACACGAAAGGGTGTTTGTTTGAAATTTCAGAGAAATGGAGATTTTGATTTCGATTAGCGATACTGAAAGAATTATAAAAAAAAAGAGACAAGGTTAATGAAAAGGAAAAGAAGAAGAAGAATGATGATGATTTGCAGAGAAAGAGAAAAAAGTTTAAAGAGAGAGGTCACCGAATTTCAAAAAAATTTTGAGGAGAATAAGTCAAGTGGAAGAGATAGGAGATTCGGTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAACATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCCYCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGTTCGCTGGAAAAGAATTTAAAAGTGCGAATTCGCTCTATTGAGATATCTTACCCGCACTTCTACACAGGTGATTCGCGAACAATCCGTTATGGACTCTCCGCGTTCGCGCGCGGTGGAAATAGGAATCGTATGCGGACCGTACGCGAACCGTTTCCAGCAAAACACAACACATTATTGCGGGTTTCTCCGTATTCTGTCCGTGAACTCCGTATCCGATCCGACCGCGAATGATGAACAAACGGTTCCGTACGCGAATCTGAATTCAATTTGAGATCGCGATAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>500 174 124 92 61 46 3</canonical_bands>
                <polymorphic_bands>674 124 92 61 46 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCAGAAATGGACACCTGAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAAATCCCGGAAATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAACATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAA</canonical_amplicon>
		<polymorphic_amplicon>GTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAACATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCCYCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35836</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>338807</contig_pos>
        <strand>+</strand>
        <context>caaaaagtgg[A/T]taattgaaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGG</left_flank>
        <right_flank>TAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTCGAGAAAACTGGAACTGTTGACAGTTTTCTTGAAAAAGGGATGAAGTGTAAAAAAAAACGAAAAGACGATGAAGATAACGATCAAGCATCTTCCTATTTCTCGAGACTACACGAAAGGGTGTTTGTTTGAAATTTCAGAGAAATGGAGATTTTGATTTCGATTAGCGATACTGAAAGAATTATAAAAAAAAAGAGACAAGGTTAATGAAAAGGAAAAGAAGAAGAAGAATGATGATGATTTGCAGAGAAAGAGAAAAAAGTTTAAAGAGAGAGGTCACCGAATTTCAAAAAAATTTTGAGGAGAATAAGTCAAGTGGAAGAGATAGGAGATTCGGTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAACATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGTTCGCTGGAAAAGAATTTAAAAGTGCGAATTCGCTCTATTGAGATATCTTACCCGCACTTCTACACAGGTGATTCGCGAACAATCCGTTATGGACTCTCCGCGTTCGCGCGCGGTGGAAATAGGAATCGTATGCGGACCGTACGCGAACCGTTTCCAGCAAAACACAACACATTATTGCGGGTTTCTCCGTATTCTGTCCGTGAACTCCGTATCCGATCCGACCGCGAATGATGAACAAACGGTTCCGTACGCGAATCTGAATTCAATTTGAGATCGCGATAATGTGTTGTGTTTTGCTGGAAACGGTTCGCGTACGGTCCGCATACGATTCCTATTT</canonical>
            <polymorphic>TGTCGAGAAAACTGGAACTGTTGACAGTTTTCTTGAAAAAGGGATGAAGTGTAAAAAAAAACGAAAAGACGATGAAGATAACGATCAAGCATCTTCCTATTTCTCGAGACTACACGAAAGGGTGTTTGTTTGAAATTTCAGAGAAATGGAGATTTTGATTTCGATTAGCGATACTGAAAGAATTATAAAAAAAAAGAGACAAGGTTAATGAAAAGGAAAAGAAGAAGAAGAATGATGATGATTTGCAGAGAAAGAGAAAAAAGTTTAAAGAGAGAGGTCACCGAATTTCAAAAAAATTTTGAGGAGAATAAGTCAAGTGGAAGAGATAGGAGATTCGGTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAACATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGWTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGTTCGCTGGAAAAGAATTTAAAAGTGCGAATTCGCTCTATTGAGATATCTTACCCGCACTTCTACACAGGTGATTCGCGAACAATCCGTTATGGACTCTCCGCGTTCGCGCGCGGTGGAAATAGGAATCGTATGCGGACCGTACGCGAACCGTTTCCAGCAAAACACAACACATTATTGCGGGTTTCTCCGTATTCTGTCCGTGAACTCCGTATCCGATCCGACCGCGAATGATGAACAAACGGTTCCGTACGCGAATCTGAATTCAATTTGAGATCGCGATAATGTGTTGTGTTTTGCTGGAAACGGTTCGCGTACGGTCCGCATACGATTCCTATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>443 345 156 56</canonical_bands>
                <polymorphic_bands>443 345 212</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTAAGTAGCGGCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACAGCAGGCTTAATACGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGWTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35837</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>338848</contig_pos>
        <strand></strand>
        <context>ATTCTTAAAC[T/A]CTGAAAAACG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAAC</left_flank>
        <right_flank>CTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATGAAGTGTAAAAAAAAACGAAAAGACGATGAAGATAACGATCAAGCATCTTCCTATTTCTCGAGACTACACGAAAGGGTGTTTGTTTGAAATTTCAGAGAAATGGAGATTTTGATTTCGATTAGCGATACTGAAAGAATTATAAAAAAAAAGAGACAAGGTTAATGAAAAGGAAAAGAAGAAGAAGAATGATGATGATTTGCAGAGAAAGAGAAAAAAGTTTAAAGAGAGAGGTCACCGAATTTCAAAAAAATTTTGAGGAGAATAAGTCAAGTGGAAGAGATAGGAGATTCGGTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAACATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGTTCGCTGGAAAAGAATTTAAAAGTGCGAATTCGCTCTATTGAGATATCTTACCCGCACTTCTACACAGGTGATTCGCGAACAATCCGTTATGGACTCTCCGCGTTCGCGCGCGGTGGAAATAGGAATCGTATGCGGACCGTACGCGAACCGTTTCCAGCAAAACACAACACATTATTGCGGGTTTCTCCGTATTCTGTCCGTGAACTCCGTATCCGATCCGACCGCGAATGATGAACAAACGGTTCCGTACGCGAATCTGAATTCAATTTGAGATCGCGATAATGTGTTGTGTTTTGCTGGAAACGGTTCGCGTACGGTCCGCATACGATTCCTATTTCAACCGCGCGCGAACGCGGAGAGTCCGTAACGGGTCCGTTC</canonical>
            <polymorphic>GGATGAAGTGTAAAAAAAAACGAAAAGACGATGAAGATAACGATCAAGCATCTTCCTATTTCTCGAGACTACACGAAAGGGTGTTTGTTTGAAATTTCAGAGAAATGGAGATTTTGATTTCGATTAGCGATACTGAAAGAATTATAAAAAAAAAGAGACAAGGTTAATGAAAAGGAAAAGAAGAAGAAGAATGATGATGATTTGCAGAGAAAGAGAAAAAAGTTTAAAGAGAGAGGTCACCGAATTTCAAAAAAATTTTGAGGAGAATAAGTCAAGTGGAAGAGATAGGAGATTCGGTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAACATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACWCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGTTCGCTGGAAAAGAATTTAAAAGTGCGAATTCGCTCTATTGAGATATCTTACCCGCACTTCTACACAGGTGATTCGCGAACAATCCGTTATGGACTCTCCGCGTTCGCGCGCGGTGGAAATAGGAATCGTATGCGGACCGTACGCGAACCGTTTCCAGCAAAACACAACACATTATTGCGGGTTTCTCCGTATTCTGTCCGTGAACTCCGTATCCGATCCGACCGCGAATGATGAACAAACGGTTCCGTACGCGAATCTGAATTCAATTTGAGATCGCGATAATGTGTTGTGTTTTGCTGGAAACGGTTCGCGTACGGTCCGCATACGATTCCTATTTCAACCGCGCGCGAACGCGGAGAGTCCGTAACGGGTCCGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>334 202 201 120 99 39 5</canonical_bands>
                <polymorphic_bands>536 201 120 99 39 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTAAGTAGCGGCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACAGCAGGCTTAATACGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACWCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35838</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>338865</contig_pos>
        <strand>+</strand>
        <context>AACGATCTTC[C/T]AGCAAAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTC</left_flank>
        <right_flank>AGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACGAAAAGACGATGAAGATAACGATCAAGCATCTTCCTATTTCTCGAGACTACACGAAAGGGTGTTTGTTTGAAATTTCAGAGAAATGGAGATTTTGATTTCGATTAGCGATACTGAAAGAATTATAAAAAAAAAGAGACAAGGTTAATGAAAAGGAAAAGAAGAAGAAGAATGATGATGATTTGCAGAGAAAGAGAAAAAAGTTTAAAGAGAGAGGTCACCGAATTTCAAAAAAATTTTGAGGAGAATAAGTCAAGTGGAAGAGATAGGAGATTCGGTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAACATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGTTCGCTGGAAAAGAATTTAAAAGTGCGAATTCGCTCTATTGAGATATCTTACCCGCACTTCTACACAGGTGATTCGCGAACAATCCGTTATGGACTCTCCGCGTTCGCGCGCGGTGGAAATAGGAATCGTATGCGGACCGTACGCGAACCGTTTCCAGCAAAACACAACACATTATTGCGGGTTTCTCCGTATTCTGTCCGTGAACTCCGTATCCGATCCGACCGCGAATGATGAACAAACGGTTCCGTACGCGAATCTGAATTCAATTTGAGATCGCGATAATGTGTTGTGTTTTGCTGGAAACGGTTCGCGTACGGTCCGCATACGATTCCTATTTCAACCGCGCGCGAACGCGGAGAGTCCGTAACGGGTCCGTTCGCATTGTACCTGTGTAT</canonical>
            <polymorphic>AAACGAAAAGACGATGAAGATAACGATCAAGCATCTTCCTATTTCTCGAGACTACACGAAAGGGTGTTTGTTTGAAATTTCAGAGAAATGGAGATTTTGATTTCGATTAGCGATACTGAAAGAATTATAAAAAAAAAGAGACAAGGTTAATGAAAAGGAAAAGAAGAAGAAGAATGATGATGATTTGCAGAGAAAGAGAAAAAAGTTTAAAGAGAGAGGTCACCGAATTTCAAAAAAATTTTGAGGAGAATAAGTCAAGTGGAAGAGATAGGAGATTCGGTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAACATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCYAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGTTCGCTGGAAAAGAATTTAAAAGTGCGAATTCGCTCTATTGAGATATCTTACCCGCACTTCTACACAGGTGATTCGCGAACAATCCGTTATGGACTCTCCGCGTTCGCGCGCGGTGGAAATAGGAATCGTATGCGGACCGTACGCGAACCGTTTCCAGCAAAACACAACACATTATTGCGGGTTTCTCCGTATTCTGTCCGTGAACTCCGTATCCGATCCGACCGCGAATGATGAACAAACGGTTCCGTACGCGAATCTGAATTCAATTTGAGATCGCGATAATGTGTTGTGTTTTGCTGGAAACGGTTCGCGTACGGTCCGCATACGATTCCTATTTCAACCGCGCGCGAACGCGGAGAGTCCGTAACGGGTCCGTTCGCATTGTACCTGTGTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 469 30</canonical_bands>
                <polymorphic_bands>531 469</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTAAGTAGCGGCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACAGCAGGCTTAATACGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCYAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35839</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>338911</contig_pos>
        <strand>+</strand>
        <context>AAATTTTTAG[A/G]TTTTTTSTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAG</left_flank>
        <right_flank>TTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGACTACACGAAAGGGTGTTTGTTTGAAATTTCAGAGAAATGGAGATTTTGATTTCGATTAGCGATACTGAAAGAATTATAAAAAAAAAGAGACAAGGTTAATGAAAAGGAAAAGAAGAAGAAGAATGATGATGATTTGCAGAGAAAGAGAAAAAAGTTTAAAGAGAGAGGTCACCGAATTTCAAAAAAATTTTGAGGAGAATAAGTCAAGTGGAAGAGATAGGAGATTCGGTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAACATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGTTCGCTGGAAAAGAATTTAAAAGTGCGAATTCGCTCTATTGAGATATCTTACCCGCACTTCTACACAGGTGATTCGCGAACAATCCGTTATGGACTCTCCGCGTTCGCGCGCGGTGGAAATAGGAATCGTATGCGGACCGTACGCGAACCGTTTCCAGCAAAACACAACACATTATTGCGGGTTTCTCCGTATTCTGTCCGTGAACTCCGTATCCGATCCGACCGCGAATGATGAACAAACGGTTCCGTACGCGAATCTGAATTCAATTTGAGATCGCGATAATGTGTTGTGTTTTGCTGGAAACGGTTCGCGTACGGTCCGCATACGATTCCTATTTCAACCGCGCGCGAACGCGGAGAGTCCGTAACGGGTCCGTTCGCATTGTACCTGTGTATACAACATCTTCAGGTATGTAGGGATCTTTTAGGAACTAGTAGAGTC</canonical>
            <polymorphic>CGAGACTACACGAAAGGGTGTTTGTTTGAAATTTCAGAGAAATGGAGATTTTGATTTCGATTAGCGATACTGAAAGAATTATAAAAAAAAAGAGACAAGGTTAATGAAAAGGAAAAGAAGAAGAAGAATGATGATGATTTGCAGAGAAAGAGAAAAAAGTTTAAAGAGAGAGGTCACCGAATTTCAAAAAAATTTTGAGGAGAATAAGTCAAGTGGAAGAGATAGGAGATTCGGTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAACATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGRTTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGTTCGCTGGAAAAGAATTTAAAAGTGCGAATTCGCTCTATTGAGATATCTTACCCGCACTTCTACACAGGTGATTCGCGAACAATCCGTTATGGACTCTCCGCGTTCGCGCGCGGTGGAAATAGGAATCGTATGCGGACCGTACGCGAACCGTTTCCAGCAAAACACAACACATTATTGCGGGTTTCTCCGTATTCTGTCCGTGAACTCCGTATCCGATCCGACCGCGAATGATGAACAAACGGTTCCGTACGCGAATCTGAATTCAATTTGAGATCGCGATAATGTGTTGTGTTTTGCTGGAAACGGTTCGCGTACGGTCCGCATACGATTCCTATTTCAACCGCGCGCGAACGCGGAGAGTCCGTAACGGGTCCGTTCGCATTGTACCTGTGTATACAACATCTTCAGGTATGTAGGGATCTTTTAGGAACTAGTAGAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTAAGTAGCGGCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACAGCAGGCTTAATACGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGRTTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35840</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>338918</contig_pos>
        <strand>+</strand>
        <context>TAGRTTTTTT[C/G]TTCRAATTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTT</left_flank>
        <right_flank>TTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACGAAAGGGTGTTTGTTTGAAATTTCAGAGAAATGGAGATTTTGATTTCGATTAGCGATACTGAAAGAATTATAAAAAAAAAGAGACAAGGTTAATGAAAAGGAAAAGAAGAAGAAGAATGATGATGATTTGCAGAGAAAGAGAAAAAAGTTTAAAGAGAGAGGTCACCGAATTTCAAAAAAATTTTGAGGAGAATAAGTCAAGTGGAAGAGATAGGAGATTCGGTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAACATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGTTCGCTGGAAAAGAATTTAAAAGTGCGAATTCGCTCTATTGAGATATCTTACCCGCACTTCTACACAGGTGATTCGCGAACAATCCGTTATGGACTCTCCGCGTTCGCGCGCGGTGGAAATAGGAATCGTATGCGGACCGTACGCGAACCGTTTCCAGCAAAACACAACACATTATTGCGGGTTTCTCCGTATTCTGTCCGTGAACTCCGTATCCGATCCGACCGCGAATGATGAACAAACGGTTCCGTACGCGAATCTGAATTCAATTTGAGATCGCGATAATGTGTTGTGTTTTGCTGGAAACGGTTCGCGTACGGTCCGCATACGATTCCTATTTCAACCGCGCGCGAACGCGGAGAGTCCGTAACGGGTCCGTTCGCATTGTACCTGTGTATACAACATCTTCAGGTATGTAGGGATCTTTTAGGAACTAGTAGAGTCCCTTTAA</canonical>
            <polymorphic>ACACGAAAGGGTGTTTGTTTGAAATTTCAGAGAAATGGAGATTTTGATTTCGATTAGCGATACTGAAAGAATTATAAAAAAAAAGAGACAAGGTTAATGAAAAGGAAAAGAAGAAGAAGAATGATGATGATTTGCAGAGAAAGAGAAAAAAGTTTAAAGAGAGAGGTCACCGAATTTCAAAAAAATTTTGAGGAGAATAAGTCAAGTGGAAGAGATAGGAGATTCGGTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAACATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTSTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGTTCGCTGGAAAAGAATTTAAAAGTGCGAATTCGCTCTATTGAGATATCTTACCCGCACTTCTACACAGGTGATTCGCGAACAATCCGTTATGGACTCTCCGCGTTCGCGCGCGGTGGAAATAGGAATCGTATGCGGACCGTACGCGAACCGTTTCCAGCAAAACACAACACATTATTGCGGGTTTCTCCGTATTCTGTCCGTGAACTCCGTATCCGATCCGACCGCGAATGATGAACAAACGGTTCCGTACGCGAATCTGAATTCAATTTGAGATCGCGATAATGTGTTGTGTTTTGCTGGAAACGGTTCGCGTACGGTCCGCATACGATTCCTATTTCAACCGCGCGCGAACGCGGAGAGTCCGTAACGGGTCCGTTCGCATTGTACCTGTGTATACAACATCTTCAGGTATGTAGGGATCTTTTAGGAACTAGTAGAGTCCCTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTAAGTAGCGGCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACAGCAGGCTTAATACGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTSTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35841</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>338922</contig_pos>
        <strand>+</strand>
        <context>TTTTTTSTTC[A/G]AATTGGCGGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTC</left_flank>
        <right_flank>AATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAGGGTGTTTGTTTGAAATTTCAGAGAAATGGAGATTTTGATTTCGATTAGCGATACTGAAAGAATTATAAAAAAAAAGAGACAAGGTTAATGAAAAGGAAAAGAAGAAGAAGAATGATGATGATTTGCAGAGAAAGAGAAAAAAGTTTAAAGAGAGAGGTCACCGAATTTCAAAAAAATTTTGAGGAGAATAAGTCAAGTGGAAGAGATAGGAGATTCGGTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAACATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGTTCGCTGGAAAAGAATTTAAAAGTGCGAATTCGCTCTATTGAGATATCTTACCCGCACTTCTACACAGGTGATTCGCGAACAATCCGTTATGGACTCTCCGCGTTCGCGCGCGGTGGAAATAGGAATCGTATGCGGACCGTACGCGAACCGTTTCCAGCAAAACACAACACATTATTGCGGGTTTCTCCGTATTCTGTCCGTGAACTCCGTATCCGATCCGACCGCGAATGATGAACAAACGGTTCCGTACGCGAATCTGAATTCAATTTGAGATCGCGATAATGTGTTGTGTTTTGCTGGAAACGGTTCGCGTACGGTCCGCATACGATTCCTATTTCAACCGCGCGCGAACGCGGAGAGTCCGTAACGGGTCCGTTCGCATTGTACCTGTGTATACAACATCTTCAGGTATGTAGGGATCTTTTAGGAACTAGTAGAGTCCCTTTAAACTA</canonical>
            <polymorphic>GAAAGGGTGTTTGTTTGAAATTTCAGAGAAATGGAGATTTTGATTTCGATTAGCGATACTGAAAGAATTATAAAAAAAAAGAGACAAGGTTAATGAAAAGGAAAAGAAGAAGAAGAATGATGATGATTTGCAGAGAAAGAGAAAAAAGTTTAAAGAGAGAGGTCACCGAATTTCAAAAAAATTTTGAGGAGAATAAGTCAAGTGGAAGAGATAGGAGATTCGGTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAACATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCRAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGTTCGCTGGAAAAGAATTTAAAAGTGCGAATTCGCTCTATTGAGATATCTTACCCGCACTTCTACACAGGTGATTCGCGAACAATCCGTTATGGACTCTCCGCGTTCGCGCGCGGTGGAAATAGGAATCGTATGCGGACCGTACGCGAACCGTTTCCAGCAAAACACAACACATTATTGCGGGTTTCTCCGTATTCTGTCCGTGAACTCCGTATCCGATCCGACCGCGAATGATGAACAAACGGTTCCGTACGCGAATCTGAATTCAATTTGAGATCGCGATAATGTGTTGTGTTTTGCTGGAAACGGTTCGCGTACGGTCCGCATACGATTCCTATTTCAACCGCGCGCGAACGCGGAGAGTCCGTAACGGGTCCGTTCGCATTGTACCTGTGTATACAACATCTTCAGGTATGTAGGGATCTTTTAGGAACTAGTAGAGTCCCTTTAAACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 452 47</canonical_bands>
                <polymorphic_bands>953 47</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTTATTTCCGGGATTT</pcr_primer_p1>
		<pcr_primer_p2>GCATACGATTCCTATTTCCAC</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGTTCGCTGGAAAAGAATTTAAAAGTGCGAATTCGCTCTATTGAGATATCTTACCCGCACTTCTACACAGGTGATTCGCGAACAATCCGTTATGGACTCTCCGCGTTCGCGCGCGGTGGAAATAGGAATCGTATGC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCRAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGTTCGCTGGAAAAGAATTTAAAAGTGCGAATTCGCTCTATTGAGATATCTTACCCGCACTTCTACACAGGTGATTCGCGAACAATCCGTTATGGACTCTCCGCGTTCGCGCGCGGTGGAAATAGGAATCGTATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35842</snp_id>
        <super_contig>c010200664.Contig1</super_contig>
        <contig_pos>338946</contig_pos>
        <strand>+</strand>
        <context>TCCTGCATCC[C/T]TTCGTTTCGT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCC</left_flank>
        <right_flank>TTCGTTTCGTATTAAGCCTGCTGTTCGCTGGAAAAGAATTTAAAAGTGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGAAATGGAGATTTTGATTTCGATTAGCGATACTGAAAGAATTATAAAAAAAAAGAGACAAGGTTAATGAAAAGGAAAAGAAGAAGAAGAATGATGATGATTTGCAGAGAAAGAGAAAAAAGTTTAAAGAGAGAGGTCACCGAATTTCAAAAAAATTTTGAGGAGAATAAGTCAAGTGGAAGAGATAGGAGATTCGGTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAACATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGTTCGCTGGAAAAGAATTTAAAAGTGCGAATTCGCTCTATTGAGATATCTTACCCGCACTTCTACACAGGTGATTCGCGAACAATCCGTTATGGACTCTCCGCGTTCGCGCGCGGTGGAAATAGGAATCGTATGCGGACCGTACGCGAACCGTTTCCAGCAAAACACAACACATTATTGCGGGTTTCTCCGTATTCTGTCCGTGAACTCCGTATCCGATCCGACCGCGAATGATGAACAAACGGTTCCGTACGCGAATCTGAATTCAATTTGAGATCGCGATAATGTGTTGTGTTTTGCTGGAAACGGTTCGCGTACGGTCCGCATACGATTCCTATTTCAACCGCGCGCGAACGCGGAGAGTCCGTAACGGGTCCGTTCGCATTGTACCTGTGTATACAACATCTTCAGGTATGTAGGGATCTTTTAGGAACTAGTAGAGTCCCTTTAAACTACTGTTAGATTTTCGTTTTAAAGGT</canonical>
            <polymorphic>AGAGAAATGGAGATTTTGATTTCGATTAGCGATACTGAAAGAATTATAAAAAAAAAGAGACAAGGTTAATGAAAAGGAAAAGAAGAAGAAGAATGATGATGATTTGCAGAGAAAGAGAAAAAAGTTTAAAGAGAGAGGTCACCGAATTTCAAAAAAATTTTGAGGAGAATAAGTCAAGTGGAAGAGATAGGAGATTCGGTCAGAAATGGACACCTGAACTGAATTTTTTAAAAATTAAAAAAAAAAAACATTTTTTGTGAAAGAACGTTTTCTATATCATTTTTAAGTAGCGGCAAAAAAGTAGCCCCGCTCATTTTGACCTGATTTATTTTGGTTCCTGTAAGCAATATCAAAAAGTGGCTAATTGAAAAAATATATTTCAAGTTCCTAGATTCTTAAACTCTGAAAAACGATCTTCTAGCAAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCYTTCGTTTCGTATTAAGCCTGCTGTTCGCTGGAAAAGAATTTAAAAGTGCGAATTCGCTCTATTGAGATATCTTACCCGCACTTCTACACAGGTGATTCGCGAACAATCCGTTATGGACTCTCCGCGTTCGCGCGCGGTGGAAATAGGAATCGTATGCGGACCGTACGCGAACCGTTTCCAGCAAAACACAACACATTATTGCGGGTTTCTCCGTATTCTGTCCGTGAACTCCGTATCCGATCCGACCGCGAATGATGAACAAACGGTTCCGTACGCGAATCTGAATTCAATTTGAGATCGCGATAATGTGTTGTGTTTTGCTGGAAACGGTTCGCGTACGGTCCGCATACGATTCCTATTTCAACCGCGCGCGAACGCGGAGAGTCCGTAACGGGTCCGTTCGCATTGTACCTGTGTATACAACATCTTCAGGTATGTAGGGATCTTTTAGGAACTAGTAGAGTCCCTTTAAACTACTGTTAGATTTTCGTTTTAAAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTTATTTCCGGGATTT</pcr_primer_p1>
		<pcr_primer_p2>GCATACGATTCCTATTTCCAC</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCGTTCGTTTCGTATTAAGCCTGCTGTTCGCTGGAAAAGAATTTAAAAGTGCGAATTCGCTCTATTGAGATATCTTACCCGCACTTCTACACAGGTGATTCGCGAACAATCCGTTATGGACTCTCCGCGTTCGCGCGCGGTGGAAATAGGAATCGTATGC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTTATTTCCGGGATTTCAAAAATTCACAAATTTTTAGATTTTTTCTTCGAATTGGCGGCGGATCCTGCATCCYTTCGTTTCGTATTAAGCCTGCTGTTCGCTGGAAAAGAATTTAAAAGTGCGAATTCGCTCTATTGAGATATCTTACCCGCACTTCTACACAGGTGATTCGCGAACAATCCGTTATGGACTCTCCGCGTTCGCGCGCGGTGGAAATAGGAATCGTATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35843</snp_id>
        <super_contig>c010200687.Contig1</super_contig>
        <contig_pos>31289</contig_pos>
        <strand>+</strand>
        <context>ATAATCGCGG[A/G]TTTTTTTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGACGAATTAAAAATTCGACCATAGAAAATGTAGAGAAAATAATCGCGG</left_flank>
        <right_flank>TTTTTTTTGAGCTATACTCCTAGGAATGTCAAAAACTGAAAGAGGAGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGATTTTAAACTCCTGCACGCTCTCCCACAGAACATTTCCAAACTGCAAATTAATTTTTGATCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGTTCCAAGATAATTCAAATAATTCTTAAAACATAAATTAGTGGTTATTTATTTATTTATGGTCCTTTTCCGGAAGAAAAAATGTCAAAAATGGNNNNNNNNNNTTTTTACAGAAAAATCTATCTCCTCTTTCAGTTTTTGATATTTCTAGGAGTTCTATAGCTCAAAAAAACCGCAATTATTTTCTCTACATTTTCTATGGATGAATTTTTAATTCGTCTGATAAAATTTTTTTTATTATCAAAAAACAACGCAAAAATGCGATTTTGTGCAATTCCATGACGTTTTTGATTATAAAAAAAGTTTTATCAGACGAATTAAAAATTCGACCATAGAAAATGTAGAGAAAATAATCGCGGTTTTTTTTTGAGCTATACTCCTAGGAATGTCAAAAACTGAAAGAGGAGATTGATTTTTTCTGTAAAAAAACTTTCAAAAATGACCATTTTTGACTTTTTTCTTTTGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTTAAGAATTATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTAAAAAGACACAATGCCAATTGTTGAATATTGTTTTCATCTCCTTAGCATTCTGTATTCCTATTTTTCGCATAAAAAACTGTTCTTGTTTTTCTTTTTTTAAGAACTACCATGCTTCGAATTCTATTCTTGCCGTCTTTCTCAAACACCCAGAGAACAATGTGCCAGATCTATCCAAAAAATAGATTTTTTAATCGCATC</canonical>
            <polymorphic>TAGATTTTAAACTCCTGCACGCTCTCCCACAGAACATTTCCAAACTGCAAATTAATTTTTGATCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGTTCCAAGATAATTCAAATAATTCTTAAAACATAAATTAGTGGTTATTTATTTATTTATGGTCCTTTTCCGGAAGAAAAAATGTCAAAAATGGNNNNNNNNNNTTTTTACAGAAAAATCTATCTCCTCTTTCAGTTTTTGATATTTCTAGGAGTTCTATAGCTCAAAAAAACCGCAATTATTTTCTCTACATTTTCTATGGATGAATTTTTAATTCGTCTGATAAAATTTTTTTTATTATCAAAAAACAACGCAAAAATGCGATTTTGTGCAATTCCATGACGTTTTTGATTATAAAAAAAGTTTTATCAGACGAATTAAAAATTCGACCATAGAAAATGTAGAGAAAATAATCGCGGRTTTTTTTTGAGCTATACTCCTAGGAATGTCAAAAACTGAAAGAGGAGATTGATTTTTTCTGTAAAAAAACTTTCAAAAATGACCATTTTTGACTTTTTTCTTTTGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTTAAGAATTATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTAAAAAGACACAATGCCAATTGTTGAATATTGTTTTCATCTCCTTAGCATTCTGTATTCCTATTTTTCGCATAAAAAACTGTTCTTGTTTTTCTTTTTTTAAGAACTACCATGCTTCGAATTCTATTCTTGCCGTCTTTCTCAAACACCCAGAGAACAATGTGCCAGATCTATCCAAAAAATAGATTTTTTAATCGCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTTCTATGGATGAATTTTTAAT</pcr_primer_p1>
		<pcr_primer_p2>AATGGTCATTTTTGAAAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>CATTTTCTATGGATGAATTTTTAATTCGTCTGATAAAATTTTTTTTATTATCAAAAAACAACGCAAAAATGCGATTTTGTGCAATTCCATGACGTTTTTGATTATAAAAAAAGTTTTATCAGACGAATTAAAAATTCGACCATAGAAAATGTAGAGAAAATAATCGCGGTTTTTTTTTGAGCTATACTCCTAGGAATGTCAAAAACTGAAAGAGGAGATTGATTTTTTCTGTAAAAAAACTTTCAAAAATGACCATT</canonical_amplicon>
		<polymorphic_amplicon>CATTTTCTATGGATGAATTTTTAATTCGTCTGATAAAATTTTTTTTATTATCAAAAAACAACGCAAAAATGCGATTTTGTGCAATTCCATGACGTTTTTGATTATAAAAAAAGTTTTATCAGACGAATTAAAAATTCGACCATAGAAAATGTAGAGAAAATAATCGCGGRTTTTTTTTGAGCTATACTCCTAGGAATGTCAAAAACTGAAAGAGGAGATTGATTTTTTCTGTAAAAAAACTTTCAAAAATGACCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35844</snp_id>
        <super_contig>c010200687.Contig1</super_contig>
        <contig_pos>31339</contig_pos>
        <strand>+</strand>
        <context>AAGAGGAGAT[A/T]RATTTTTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTTTTTGAGCTATACTCCTAGGAATGTCAAAAACTGAAAGAGGAGAT</left_flank>
        <right_flank>GATTTTTTCTGTAAAAAAACTTTCAAAAATGACCATTTTTGACTTTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAATTTTTGATCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGTTCCAAGATAATTCAAATAATTCTTAAAACATAAATTAGTGGTTATTTATTTATTTATGGTCCTTTTCCGGAAGAAAAAATGTCAAAAATGGNNNNNNNNNNTTTTTACAGAAAAATCTATCTCCTCTTTCAGTTTTTGATATTTCTAGGAGTTCTATAGCTCAAAAAAACCGCAATTATTTTCTCTACATTTTCTATGGATGAATTTTTAATTCGTCTGATAAAATTTTTTTTATTATCAAAAAACAACGCAAAAATGCGATTTTGTGCAATTCCATGACGTTTTTGATTATAAAAAAAGTTTTATCAGACGAATTAAAAATTCGACCATAGAAAATGTAGAGAAAATAATCGCGGTTTTTTTTTGAGCTATACTCCTAGGAATGTCAAAAACTGAAAGAGGAGATTGATTTTTTCTGTAAAAAAACTTTCAAAAATGACCATTTTTGACTTTTTTCTTTTGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTTAAGAATTATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTAAAAAGACACAATGCCAATTGTTGAATATTGTTTTCATCTCCTTAGCATTCTGTATTCCTATTTTTCGCATAAAAAACTGTTCTTGTTTTTCTTTTTTTAAGAACTACCATGCTTCGAATTCTATTCTTGCCGTCTTTCTCAAACACCCAGAGAACAATGTGCCAGATCTATCCAAAAAATAGATTTTTTAATCGCATCTTCTCTGATTCTCATCCTCTGCTCTCCCAACTTTGAGCAGTTCAGAAATA</canonical>
            <polymorphic>ATTAATTTTTGATCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGTTCCAAGATAATTCAAATAATTCTTAAAACATAAATTAGTGGTTATTTATTTATTTATGGTCCTTTTCCGGAAGAAAAAATGTCAAAAATGGNNNNNNNNNNTTTTTACAGAAAAATCTATCTCCTCTTTCAGTTTTTGATATTTCTAGGAGTTCTATAGCTCAAAAAAACCGCAATTATTTTCTCTACATTTTCTATGGATGAATTTTTAATTCGTCTGATAAAATTTTTTTTATTATCAAAAAACAACGCAAAAATGCGATTTTGTGCAATTCCATGACGTTTTTGATTATAAAAAAAGTTTTATCAGACGAATTAAAAATTCGACCATAGAAAATGTAGAGAAAATAATCGCGGTTTTTTTTTGAGCTATACTCCTAGGAATGTCAAAAACTGAAAGAGGAGATWGATTTTTTCTGTAAAAAAACTTTCAAAAATGACCATTTTTGACTTTTTTCTTTTGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTTAAGAATTATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTAAAAAGACACAATGCCAATTGTTGAATATTGTTTTCATCTCCTTAGCATTCTGTATTCCTATTTTTCGCATAAAAAACTGTTCTTGTTTTTCTTTTTTTAAGAACTACCATGCTTCGAATTCTATTCTTGCCGTCTTTCTCAAACACCCAGAGAACAATGTGCCAGATCTATCCAAAAAATAGATTTTTTAATCGCATCTTCTCTGATTCTCATCCTCTGCTCTCCCAACTTTGAGCAGTTCAGAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTAAAAATTCGACCATAGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTATCTGATTTTGTGGAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GAATTAAAAATTCGACCATAGAAAATGTAGAGAAAATAATCGCGGTTTTTTTTTGAGCTATACTCCTAGGAATGTCAAAAACTGAAAGAGGAGATTGATTTTTTCTGTAAAAAAACTTTCAAAAATGACCATTTTTGACTTTTTTCTTTTGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTTAAGAATTATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAATTAAAAATTCGACCATAGAAAATGTAGAGAAAATAATCGCGGTTTTTTTTTGAGCTATACTCCTAGGAATGTCAAAAACTGAAAGAGGAGATWGATTTTTTCTGTAAAAAAACTTTCAAAAATGACCATTTTTGACTTTTTTCTTTTGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTTAAGAATTATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35845</snp_id>
        <super_contig>c010200687.Contig1</super_contig>
        <contig_pos>31340</contig_pos>
        <strand>+</strand>
        <context>AGAGGAGATW[A/G]ATTTTTTCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTTTGAGCTATACTCCTAGGAATGTCAAAAACTGAAAGAGGAGATT</left_flank>
        <right_flank>ATTTTTTCTGTAAAAAAACTTTCAAAAATGACCATTTTTGACTTTTTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAATTTTTGATCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGTTCCAAGATAATTCAAATAATTCTTAAAACATAAATTAGTGGTTATTTATTTATTTATGGTCCTTTTCCGGAAGAAAAAATGTCAAAAATGGNNNNNNNNNNTTTTTACAGAAAAATCTATCTCCTCTTTCAGTTTTTGATATTTCTAGGAGTTCTATAGCTCAAAAAAACCGCAATTATTTTCTCTACATTTTCTATGGATGAATTTTTAATTCGTCTGATAAAATTTTTTTTATTATCAAAAAACAACGCAAAAATGCGATTTTGTGCAATTCCATGACGTTTTTGATTATAAAAAAAGTTTTATCAGACGAATTAAAAATTCGACCATAGAAAATGTAGAGAAAATAATCGCGGTTTTTTTTTGAGCTATACTCCTAGGAATGTCAAAAACTGAAAGAGGAGATTGATTTTTTCTGTAAAAAAACTTTCAAAAATGACCATTTTTGACTTTTTTCTTTTGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTTAAGAATTATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTAAAAAGACACAATGCCAATTGTTGAATATTGTTTTCATCTCCTTAGCATTCTGTATTCCTATTTTTCGCATAAAAAACTGTTCTTGTTTTTCTTTTTTTAAGAACTACCATGCTTCGAATTCTATTCTTGCCGTCTTTCTCAAACACCCAGAGAACAATGTGCCAGATCTATCCAAAAAATAGATTTTTTAATCGCATCTTCTCTGATTCTCATCCTCTGCTCTCCCAACTTTGAGCAGTTCAGAAATAC</canonical>
            <polymorphic>TTAATTTTTGATCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGTTCCAAGATAATTCAAATAATTCTTAAAACATAAATTAGTGGTTATTTATTTATTTATGGTCCTTTTCCGGAAGAAAAAATGTCAAAAATGGNNNNNNNNNNTTTTTACAGAAAAATCTATCTCCTCTTTCAGTTTTTGATATTTCTAGGAGTTCTATAGCTCAAAAAAACCGCAATTATTTTCTCTACATTTTCTATGGATGAATTTTTAATTCGTCTGATAAAATTTTTTTTATTATCAAAAAACAACGCAAAAATGCGATTTTGTGCAATTCCATGACGTTTTTGATTATAAAAAAAGTTTTATCAGACGAATTAAAAATTCGACCATAGAAAATGTAGAGAAAATAATCGCGGTTTTTTTTTGAGCTATACTCCTAGGAATGTCAAAAACTGAAAGAGGAGATTRATTTTTTCTGTAAAAAAACTTTCAAAAATGACCATTTTTGACTTTTTTCTTTTGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTTAAGAATTATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTAAAAAGACACAATGCCAATTGTTGAATATTGTTTTCATCTCCTTAGCATTCTGTATTCCTATTTTTCGCATAAAAAACTGTTCTTGTTTTTCTTTTTTTAAGAACTACCATGCTTCGAATTCTATTCTTGCCGTCTTTCTCAAACACCCAGAGAACAATGTGCCAGATCTATCCAAAAAATAGATTTTTTAATCGCATCTTCTCTGATTCTCATCCTCTGCTCTCCCAACTTTGAGCAGTTCAGAAATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTAAAAATTCGACCATAGAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTATCTGATTTTGTGGAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GAATTAAAAATTCGACCATAGAAAATGTAGAGAAAATAATCGCGGTTTTTTTTTGAGCTATACTCCTAGGAATGTCAAAAACTGAAAGAGGAGATTGATTTTTTCTGTAAAAAAACTTTCAAAAATGACCATTTTTGACTTTTTTCTTTTGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTTAAGAATTATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAATTAAAAATTCGACCATAGAAAATGTAGAGAAAATAATCGCGGTTTTTTTTTGAGCTATACTCCTAGGAATGTCAAAAACTGAAAGAGGAGATTRATTTTTTCTGTAAAAAAACTTTCAAAAATGACCATTTTTGACTTTTTTCTTTTGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTTAAGAATTATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35846</snp_id>
        <super_contig>c010200687.Contig1</super_contig>
        <contig_pos>31437</contig_pos>
        <strand>+</strand>
        <context>ATTAATTTTT[A/T]AAGAATTATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCTTTTGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTT</left_flank>
        <right_flank>AAGAATTATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAAATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATAATTCAAATAATTCTTAAAACATAAATTAGTGGTTATTTATTTATTTATGGTCCTTTTCCGGAAGAAAAAATGTCAAAAATGGNNNNNNNNNNTTTTTACAGAAAAATCTATCTCCTCTTTCAGTTTTTGATATTTCTAGGAGTTCTATAGCTCAAAAAAACCGCAATTATTTTCTCTACATTTTCTATGGATGAATTTTTAATTCGTCTGATAAAATTTTTTTTATTATCAAAAAACAACGCAAAAATGCGATTTTGTGCAATTCCATGACGTTTTTGATTATAAAAAAAGTTTTATCAGACGAATTAAAAATTCGACCATAGAAAATGTAGAGAAAATAATCGCGGTTTTTTTTTGAGCTATACTCCTAGGAATGTCAAAAACTGAAAGAGGAGATTGATTTTTTCTGTAAAAAAACTTTCAAAAATGACCATTTTTGACTTTTTTCTTTTGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTTAAGAATTATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTAAAAAGACACAATGCCAATTGTTGAATATTGTTTTCATCTCCTTAGCATTCTGTATTCCTATTTTTCGCATAAAAAACTGTTCTTGTTTTTCTTTTTTTAAGAACTACCATGCTTCGAATTCTATTCTTGCCGTCTTTCTCAAACACCCAGAGAACAATGTGCCAGATCTATCCAAAAAATAGATTTTTTAATCGCATCTTCTCTGATTCTCATCCTCTGCTCTCCCAACTTTGAGCAGTTCAGAAATACGTGTGAAGCAAAAAAAATGAGCCTGAAAAGGTGTTTTTTTTGGATTTTGTACTTTTCTGCTTGTATGAAAATCTCACAAAATATTCATACATGAAAA</canonical>
            <polymorphic>GATAATTCAAATAATTCTTAAAACATAAATTAGTGGTTATTTATTTATTTATGGTCCTTTTCCGGAAGAAAAAATGTCAAAAATGGNNNNNNNNNNTTTTTACAGAAAAATCTATCTCCTCTTTCAGTTTTTGATATTTCTAGGAGTTCTATAGCTCAAAAAAACCGCAATTATTTTCTCTACATTTTCTATGGATGAATTTTTAATTCGTCTGATAAAATTTTTTTTATTATCAAAAAACAACGCAAAAATGCGATTTTGTGCAATTCCATGACGTTTTTGATTATAAAAAAAGTTTTATCAGACGAATTAAAAATTCGACCATAGAAAATGTAGAGAAAATAATCGCGGTTTTTTTTTGAGCTATACTCCTAGGAATGTCAAAAACTGAAAGAGGAGATTGATTTTTTCTGTAAAAAAACTTTCAAAAATGACCATTTTTGACTTTTTTCTTTTGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTWAAGAATTATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTAAAAAGACACAATGCCAATTGTTGAATATTGTTTTCATCTCCTTAGCATTCTGTATTCCTATTTTTCGCATAAAAAACTGTTCTTGTTTTTCTTTTTTTAAGAACTACCATGCTTCGAATTCTATTCTTGCCGTCTTTCTCAAACACCCAGAGAACAATGTGCCAGATCTATCCAAAAAATAGATTTTTTAATCGCATCTTCTCTGATTCTCATCCTCTGCTCTCCCAACTTTGAGCAGTTCAGAAATACGTGTGAAGCAAAAAAAATGAGCCTGAAAAGGTGTTTTTTTTGGATTTTGTACTTTTCTGCTTGTATGAAAATCTCACAAAATATTCATACATGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>185 181 158 136 116 107 91 18 8</canonical_bands>
                <polymorphic_bands>185 181 158 136 124 107 91 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTGGAAAAGGACCATA</pcr_primer_p1>
		<pcr_primer_p2>AAGGAGATGAAAACAATATTCAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTTAAGAATTATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTAAAAAGACACAATGCCAATTGTTGAATATTGTTTTCATCTCCTT</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTWAAGAATTATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTAAAAAGACACAATGCCAATTGTTGAATATTGTTTTCATCTCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35847</snp_id>
        <super_contig>c010200687.Contig1</super_contig>
        <contig_pos>31530</contig_pos>
        <strand>+</strand>
        <context>CGCGCCAAAC[C/T]TTTTTTTCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAAC</left_flank>
        <right_flank>TTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NNNTTTTTACAGAAAAATCTATCTCCTCTTTCAGTTTTTGATATTTCTAGGAGTTCTATAGCTCAAAAAAACCGCAATTATTTTCTCTACATTTTCTATGGATGAATTTTTAATTCGTCTGATAAAATTTTTTTTATTATCAAAAAACAACGCAAAAATGCGATTTTGTGCAATTCCATGACGTTTTTGATTATAAAAAAAGTTTTATCAGACGAATTAAAAATTCGACCATAGAAAATGTAGAGAAAATAATCGCGGTTTTTTTTTGAGCTATACTCCTAGGAATGTCAAAAACTGAAAGAGGAGATTGATTTTTTCTGTAAAAAAACTTTCAAAAATGACCATTTTTGACTTTTTTCTTTTGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTTAAGAATTATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTAAAAAGACACAATGCCAATTGTTGAATATTGTTTTCATCTCCTTAGCATTCTGTATTCCTATTTTTCGCATAAAAAACTGTTCTTGTTTTTCTTTTTTTAAGAACTACCATGCTTCGAATTCTATTCTTGCCGTCTTTCTCAAACACCCAGAGAACAATGTGCCAGATCTATCCAAAAAATAGATTTTTTAATCGCATCTTCTCTGATTCTCATCCTCTGCTCTCCCAACTTTGAGCAGTTCAGAAATACGTGTGAAGCAAAAAAAATGAGCCTGAAAAGGTGTTTTTTTTGGATTTTGTACTTTTCTGCTTGTATGAAAATCTCACAAAATATTCATACATGAAAATAATACTATCCTCATGATACACTCATTGTGCTCGACATGTGATGTTACAACTTTTTTCTTCTTCGTTTTTTCCACTTTTGAGACCAAGAAAAC</canonical>
            <polymorphic>NNNTTTTTACAGAAAAATCTATCTCCTCTTTCAGTTTTTGATATTTCTAGGAGTTCTATAGCTCAAAAAAACCGCAATTATTTTCTCTACATTTTCTATGGATGAATTTTTAATTCGTCTGATAAAATTTTTTTTATTATCAAAAAACAACGCAAAAATGCGATTTTGTGCAATTCCATGACGTTTTTGATTATAAAAAAAGTTTTATCAGACGAATTAAAAATTCGACCATAGAAAATGTAGAGAAAATAATCGCGGTTTTTTTTTGAGCTATACTCCTAGGAATGTCAAAAACTGAAAGAGGAGATTGATTTTTTCTGTAAAAAAACTTTCAAAAATGACCATTTTTGACTTTTTTCTTTTGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTTAAGAATTATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACYTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTAAAAAGACACAATGCCAATTGTTGAATATTGTTTTCATCTCCTTAGCATTCTGTATTCCTATTTTTCGCATAAAAAACTGTTCTTGTTTTTCTTTTTTTAAGAACTACCATGCTTCGAATTCTATTCTTGCCGTCTTTCTCAAACACCCAGAGAACAATGTGCCAGATCTATCCAAAAAATAGATTTTTTAATCGCATCTTCTCTGATTCTCATCCTCTGCTCTCCCAACTTTGAGCAGTTCAGAAATACGTGTGAAGCAAAAAAAATGAGCCTGAAAAGGTGTTTTTTTTGGATTTTGTACTTTTCTGCTTGTATGAAAATCTCACAAAATATTCATACATGAAAATAATACTATCCTCATGATACACTCATTGTGCTCGACATGTGATGTTACAACTTTTTTCTTCTTCGTTTTTTCCACTTTTGAGACCAAGAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGACCATACATGAATCTATAACC</pcr_primer_p1>
		<pcr_primer_p2>GAATACAGAATGCTAAGGAGATG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGACCATACATGAATCTATAACCACTAATTAATTTTTTAAGAATTATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTAAAAAGACACAATGCCAATTGTTGAATATTGTTTTCATCTCCTTAGCATTCTGTATTC</canonical_amplicon>
		<polymorphic_amplicon>AGGACCATACATGAATCTATAACCACTAATTAATTTTTTAAGAATTATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACYTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTAAAAAGACACAATGCCAATTGTTGAATATTGTTTTCATCTCCTTAGCATTCTGTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35848</snp_id>
        <super_contig>c010200687.Contig1</super_contig>
        <contig_pos>31600</contig_pos>
        <strand>+</strand>
        <context>TAAAAAGACA[A/C]AATGCCAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTAAAAAGACA</left_flank>
        <right_flank>AATGCCAATTGTTGAATATTGTTTTCATCTCCTTAGCATTCTGTATTCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCGCAATTATTTTCTCTACATTTTCTATGGATGAATTTTTAATTCGTCTGATAAAATTTTTTTTATTATCAAAAAACAACGCAAAAATGCGATTTTGTGCAATTCCATGACGTTTTTGATTATAAAAAAAGTTTTATCAGACGAATTAAAAATTCGACCATAGAAAATGTAGAGAAAATAATCGCGGTTTTTTTTTGAGCTATACTCCTAGGAATGTCAAAAACTGAAAGAGGAGATTGATTTTTTCTGTAAAAAAACTTTCAAAAATGACCATTTTTGACTTTTTTCTTTTGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTTAAGAATTATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTAAAAAGACACAATGCCAATTGTTGAATATTGTTTTCATCTCCTTAGCATTCTGTATTCCTATTTTTCGCATAAAAAACTGTTCTTGTTTTTCTTTTTTTAAGAACTACCATGCTTCGAATTCTATTCTTGCCGTCTTTCTCAAACACCCAGAGAACAATGTGCCAGATCTATCCAAAAAATAGATTTTTTAATCGCATCTTCTCTGATTCTCATCCTCTGCTCTCCCAACTTTGAGCAGTTCAGAAATACGTGTGAAGCAAAAAAAATGAGCCTGAAAAGGTGTTTTTTTTGGATTTTGTACTTTTCTGCTTGTATGAAAATCTCACAAAATATTCATACATGAAAATAATACTATCCTCATGATACACTCATTGTGCTCGACATGTGATGTTACAACTTTTTTCTTCTTCGTTTTTTCCACTTTTGAGACCAAGAAAACAAGAAGCCGGGAAAATCTAACGGCTGATGTGTTAGGCACATTTGAGATCACTGGAAAATTCTCATATCAC</canonical>
            <polymorphic>ACCGCAATTATTTTCTCTACATTTTCTATGGATGAATTTTTAATTCGTCTGATAAAATTTTTTTTATTATCAAAAAACAACGCAAAAATGCGATTTTGTGCAATTCCATGACGTTTTTGATTATAAAAAAAGTTTTATCAGACGAATTAAAAATTCGACCATAGAAAATGTAGAGAAAATAATCGCGGTTTTTTTTTGAGCTATACTCCTAGGAATGTCAAAAACTGAAAGAGGAGATTGATTTTTTCTGTAAAAAAACTTTCAAAAATGACCATTTTTGACTTTTTTCTTTTGGAAAAGGACCATACATGAATCTATAACCACTAATTAATTTTTTAAGAATTATTTGAATCATCTTGGAACTCCACAAAATCAGATAAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTAAAAAGACAMAATGCCAATTGTTGAATATTGTTTTCATCTCCTTAGCATTCTGTATTCCTATTTTTCGCATAAAAAACTGTTCTTGTTTTTCTTTTTTTAAGAACTACCATGCTTCGAATTCTATTCTTGCCGTCTTTCTCAAACACCCAGAGAACAATGTGCCAGATCTATCCAAAAAATAGATTTTTTAATCGCATCTTCTCTGATTCTCATCCTCTGCTCTCCCAACTTTGAGCAGTTCAGAAATACGTGTGAAGCAAAAAAAATGAGCCTGAAAAGGTGTTTTTTTTGGATTTTGTACTTTTCTGCTTGTATGAAAATCTCACAAAATATTCATACATGAAAATAATACTATCCTCATGATACACTCATTGTGCTCGACATGTGATGTTACAACTTTTTTCTTCTTCGTTTTTTCCACTTTTGAGACCAAGAAAACAAGAAGCCGGGAAAATCTAACGGCTGATGTGTTAGGCACATTTGAGATCACTGGAAAATTCTCATATCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>223 137 100 91 62 50 50 44 43 42 33 28 19 16 12 11 10 10 9 7 2 1</canonical_bands>
                <polymorphic_bands>223 147 100 91 62 50 50 44 43 42 33 28 19 16 12 11 10 9 7 2 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACTCCACAAAATCAGATAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTCGAAGCATGGTAGTTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAACTCCACAAAATCAGATAAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTAAAAAGACACAATGCCAATTGTTGAATATTGTTTTCATCTCCTTAGCATTCTGTATTCCTATTTTTCGCATAAAAAACTGTTCTTGTTTTTCTTTTTTTAAGAACTACCATGCTTCGAAT</canonical_amplicon>
		<polymorphic_amplicon>GAACTCCACAAAATCAGATAAAAAATTCTGAAATTATGGTTTTAGACCTGCAATTGTGATCGCGCCAAACTTTTTTTTCTGTAGATCAAAAATTAATTTGCAGTTCGGAAATGTTCTGTGGGAGAGCGTGTAAAAAGACAMAATGCCAATTGTTGAATATTGTTTTCATCTCCTTAGCATTCTGTATTCCTATTTTTCGCATAAAAAACTGTTCTTGTTTTTCTTTTTTTAAGAACTACCATGCTTCGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35849</snp_id>
        <super_contig>c010200687.Contig1</super_contig>
        <contig_pos>33585</contig_pos>
        <strand>+</strand>
        <context>GAAGAATCAG[A/T]AGCGAAGAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTGTGAAGAAGTGTAATGTTGACGCTGTCTGTAAAATCAGAAGAATCAG</left_flank>
        <right_flank>AGCGAAGAAGGAAATTATGTTTCTGAACTCTCAAGAACAGGGAAGTGCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTCTGAAGTTCTGAAACTATACGTTTTCGAGATTCGGGGTATTCTGAAATTCCGCTTTTTGGAAGTTTGAAGATTCTTGGAGATTAAAAGATGAGAGACACATACCTTAGTCATTCTCTTGAAATTATGGTATCACATATTTTGCGTTATCAGACGTTAATCAAATAACGTAATTCAGTCGGCGGCTCAAAATATTTTCGTCAAAAGTTCAAATCCCCGAGAGGCTTCAACGGGGGAAAATAATATCAAATCCCAAAAATTTATAATCCTTATTGGTTTAATCTGCAGCTAGTGCATTTTCTTCGACGGAGTTTGTGCTCCCGATTTTCATTTCTACTGAGGGGATAATCGTTTGATCAGGAAGATGATGTGTAGAGAAATGAAATTTGTGCTAAATACACTATTTGTTTTTCTTGTGGGGAGAGCCGTTTGATCAGACAAGTGATGTGTGTGAAGAAGTGTAATGTTGACGCTGTCTGTAAAATCAGAAGAATCAGTAGCGAAGAAGGAAATTATGTTTCTGAACTCTCAAGAACAGGGAAGTGCAAGAAAAATTATCCCGATTTGTTTCAAACAGAGATCACGGTTTCTCCAAAAGCAAAAATTGTGGTCTCTATAGACCCTCATGAAAATTTTCTCATGTTTTTGTAGTCAAAACAGATGTGTATAGGAAGCGTTACTAGATTTTAGTTCTCAAAGTCTGAAGAATGTAGGATACGGAATACATTCAGTTTTTAGACGATTTTCGTGGGAACTTTTAAAGAGTTGAGAAATATTTGAAGTTGCTCAATGATGCTCCAAATCTGATAAAAACTATGTGGATAAAAACCAAAGAGAGTTTTGTATAAGGATTGTGAGAATAAAACTAATGAAAAGGTTTTGGATTTTGTGAATGAAACAAAAATGGCTCATGAATATTAAGATTTCCTAATTTCGGAGGCTTGGCCCGGCGGGCCTGTCATTTCACAAATTTTGAAAATTTCAAAAAACACATAAGG</canonical>
            <polymorphic>GTTTCTGAAGTTCTGAAACTATACGTTTTCGAGATTCGGGGTATTCTGAAATTCCGCTTTTTGGAAGTTTGAAGATTCTTGGAGATTAAAAGATGAGAGACACATACCTTAGTCATTCTCTTGAAATTATGGTATCACATATTTTGCGTTATCAGACGTTAATCAAATAACGTAATTCAGTCGGCGGCTCAAAATATTTTCGTCAAAAGTTCAAATCCCCGAGAGGCTTCAACGGGGGAAAATAATATCAAATCCCAAAAATTTATAATCCTTATTGGTTTAATCTGCAGCTAGTGCATTTTCTTCGACGGAGTTTGTGCTCCCGATTTTCATTTCTACTGAGGGGATAATCGTTTGATCAGGAAGATGATGTGTAGAGAAATGAAATTTGTGCTAAATACACTATTTGTTTTTCTTGTGGGGAGAGCCGTTTGATCAGACAAGTGATGTGTGTGAAGAAGTGTAATGTTGACGCTGTCTGTAAAATCAGAAGAATCAGWAGCGAAGAAGGAAATTATGTTTCTGAACTCTCAAGAACAGGGAAGTGCAAGAAAAATTATCCCGATTTGTTTCAAACAGAGATCACGGTTTCTCCAAAAGCAAAAATTGTGGTCTCTATAGACCCTCATGAAAATTTTCTCATGTTTTTGTAGTCAAAACAGATGTGTATAGGAAGCGTTACTAGATTTTAGTTCTCAAAGTCTGAAGAATGTAGGATACGGAATACATTCAGTTTTTAGACGATTTTCGTGGGAACTTTTAAAGAGTTGAGAAATATTTGAAGTTGCTCAATGATGCTCCAAATCTGATAAAAACTATGTGGATAAAAACCAAAGAGAGTTTTGTATAAGGATTGTGAGAATAAAACTAATGAAAAGGTTTTGGATTTTGTGAATGAAACAAAAATGGCTCATGAATATTAAGATTTCCTAATTTCGGAGGCTTGGCCCGGCGGGCCTGTCATTTCACAAATTTTGAAAATTTCAAAAAACACATAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCATTTCTACTGAGGGGATA</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAACAAATCGGGATAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTCATTTCTACTGAGGGGATAATCGTTTGATCAGGAAGATGATGTGTAGAGAAATGAAATTTGTGCTAAATACACTATTTGTTTTTCTTGTGGGGAGAGCCGTTTGATCAGACAAGTGATGTGTGTGAAGAAGTGTAATGTTGACGCTGTCTGTAAAATCAGAAGAATCAGTAGCGAAGAAGGAAATTATGTTTCTGAACTCTCAAGAACAGGGAAGTGCAAGAAAAATTATCCCGATTTGTTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTCATTTCTACTGAGGGGATAATCGTTTGATCAGGAAGATGATGTGTAGAGAAATGAAATTTGTGCTAAATACACTATTTGTTTTTCTTGTGGGGAGAGCCGTTTGATCAGACAAGTGATGTGTGTGAAGAAGTGTAATGTTGACGCTGTCTGTAAAATCAGAAGAATCAGWAGCGAAGAAGGAAATTATGTTTCTGAACTCTCAAGAACAGGGAAGTGCAAGAAAAATTATCCCGATTTGTTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35850</snp_id>
        <super_contig>c010200687.Contig1</super_contig>
        <contig_pos>33636</contig_pos>
        <strand>+</strand>
        <context>GGAAGTGCAA[A/G]AAAAATTATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCGAAGAAGGAAATTATGTTTCTGAACTCTCAAGAACAGGGAAGTGCAA</left_flank>
        <right_flank>AAAAATTATCCCGATTTGTTTCAAACAGAGATCACGGTTTCTCCAAAAGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCGCTTTTTGGAAGTTTGAAGATTCTTGGAGATTAAAAGATGAGAGACACATACCTTAGTCATTCTCTTGAAATTATGGTATCACATATTTTGCGTTATCAGACGTTAATCAAATAACGTAATTCAGTCGGCGGCTCAAAATATTTTCGTCAAAAGTTCAAATCCCCGAGAGGCTTCAACGGGGGAAAATAATATCAAATCCCAAAAATTTATAATCCTTATTGGTTTAATCTGCAGCTAGTGCATTTTCTTCGACGGAGTTTGTGCTCCCGATTTTCATTTCTACTGAGGGGATAATCGTTTGATCAGGAAGATGATGTGTAGAGAAATGAAATTTGTGCTAAATACACTATTTGTTTTTCTTGTGGGGAGAGCCGTTTGATCAGACAAGTGATGTGTGTGAAGAAGTGTAATGTTGACGCTGTCTGTAAAATCAGAAGAATCAGTAGCGAAGAAGGAAATTATGTTTCTGAACTCTCAAGAACAGGGAAGTGCAAGAAAAATTATCCCGATTTGTTTCAAACAGAGATCACGGTTTCTCCAAAAGCAAAAATTGTGGTCTCTATAGACCCTCATGAAAATTTTCTCATGTTTTTGTAGTCAAAACAGATGTGTATAGGAAGCGTTACTAGATTTTAGTTCTCAAAGTCTGAAGAATGTAGGATACGGAATACATTCAGTTTTTAGACGATTTTCGTGGGAACTTTTAAAGAGTTGAGAAATATTTGAAGTTGCTCAATGATGCTCCAAATCTGATAAAAACTATGTGGATAAAAACCAAAGAGAGTTTTGTATAAGGATTGTGAGAATAAAACTAATGAAAAGGTTTTGGATTTTGTGAATGAAACAAAAATGGCTCATGAATATTAAGATTTCCTAATTTCGGAGGCTTGGCCCGGCGGGCCTGTCATTTCACAAATTTTGAAAATTTCAAAAAACACATAAGGGGAGACCCTTATGTGATTTTTTTCGATCAAAACATTTTTTTCGAGTTTTTT</canonical>
            <polymorphic>TTCCGCTTTTTGGAAGTTTGAAGATTCTTGGAGATTAAAAGATGAGAGACACATACCTTAGTCATTCTCTTGAAATTATGGTATCACATATTTTGCGTTATCAGACGTTAATCAAATAACGTAATTCAGTCGGCGGCTCAAAATATTTTCGTCAAAAGTTCAAATCCCCGAGAGGCTTCAACGGGGGAAAATAATATCAAATCCCAAAAATTTATAATCCTTATTGGTTTAATCTGCAGCTAGTGCATTTTCTTCGACGGAGTTTGTGCTCCCGATTTTCATTTCTACTGAGGGGATAATCGTTTGATCAGGAAGATGATGTGTAGAGAAATGAAATTTGTGCTAAATACACTATTTGTTTTTCTTGTGGGGAGAGCCGTTTGATCAGACAAGTGATGTGTGTGAAGAAGTGTAATGTTGACGCTGTCTGTAAAATCAGAAGAATCAGTAGCGAAGAAGGAAATTATGTTTCTGAACTCTCAAGAACAGGGAAGTGCAARAAAAATTATCCCGATTTGTTTCAAACAGAGATCACGGTTTCTCCAAAAGCAAAAATTGTGGTCTCTATAGACCCTCATGAAAATTTTCTCATGTTTTTGTAGTCAAAACAGATGTGTATAGGAAGCGTTACTAGATTTTAGTTCTCAAAGTCTGAAGAATGTAGGATACGGAATACATTCAGTTTTTAGACGATTTTCGTGGGAACTTTTAAAGAGTTGAGAAATATTTGAAGTTGCTCAATGATGCTCCAAATCTGATAAAAACTATGTGGATAAAAACCAAAGAGAGTTTTGTATAAGGATTGTGAGAATAAAACTAATGAAAAGGTTTTGGATTTTGTGAATGAAACAAAAATGGCTCATGAATATTAAGATTTCCTAATTTCGGAGGCTTGGCCCGGCGGGCCTGTCATTTCACAAATTTTGAAAATTTCAAAAAACACATAAGGGGAGACCCTTATGTGATTTTTTTCGATCAAAACATTTTTTTCGAGTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAATGTTGACGCTGTCTGTAA</pcr_primer_p1>
		<pcr_primer_p2>CATTCTTCAGACTTTGAGAACTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAATGTTGACGCTGTCTGTAAAATCAGAAGAATCAGTAGCGAAGAAGGAAATTATGTTTCTGAACTCTCAAGAACAGGGAAGTGCAAGAAAAATTATCCCGATTTGTTTCAAACAGAGATCACGGTTTCTCCAAAAGCAAAAATTGTGGTCTCTATAGACCCTCATGAAAATTTTCTCATGTTTTTGTAGTCAAAACAGATGTGTATAGGAAGCGTTACTAGATTTTAGTTCTCAAAGTCTGAAGAATG</canonical_amplicon>
		<polymorphic_amplicon>GTAATGTTGACGCTGTCTGTAAAATCAGAAGAATCAGTAGCGAAGAAGGAAATTATGTTTCTGAACTCTCAAGAACAGGGAAGTGCAARAAAAATTATCCCGATTTGTTTCAAACAGAGATCACGGTTTCTCCAAAAGCAAAAATTGTGGTCTCTATAGACCCTCATGAAAATTTTCTCATGTTTTTGTAGTCAAAACAGATGTGTATAGGAAGCGTTACTAGATTTTAGTTCTCAAAGTCTGAAGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35851</snp_id>
        <super_contig>c010200687.Contig1</super_contig>
        <contig_pos>33693</contig_pos>
        <strand>+</strand>
        <context>AAGCAAAAAT[C/T]GTGGTCTCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATCCCGATTTGTTTCAAACAGAGATCACGGTTTCTCCAAAAGCAAAAAT</left_flank>
        <right_flank>GTGGTCTCTATAGACCCTCATGAAAATTTTCTCATGTTTTTGTAGTCAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAGTCATTCTCTTGAAATTATGGTATCACATATTTTGCGTTATCAGACGTTAATCAAATAACGTAATTCAGTCGGCGGCTCAAAATATTTTCGTCAAAAGTTCAAATCCCCGAGAGGCTTCAACGGGGGAAAATAATATCAAATCCCAAAAATTTATAATCCTTATTGGTTTAATCTGCAGCTAGTGCATTTTCTTCGACGGAGTTTGTGCTCCCGATTTTCATTTCTACTGAGGGGATAATCGTTTGATCAGGAAGATGATGTGTAGAGAAATGAAATTTGTGCTAAATACACTATTTGTTTTTCTTGTGGGGAGAGCCGTTTGATCAGACAAGTGATGTGTGTGAAGAAGTGTAATGTTGACGCTGTCTGTAAAATCAGAAGAATCAGTAGCGAAGAAGGAAATTATGTTTCTGAACTCTCAAGAACAGGGAAGTGCAAGAAAAATTATCCCGATTTGTTTCAAACAGAGATCACGGTTTCTCCAAAAGCAAAAATTGTGGTCTCTATAGACCCTCATGAAAATTTTCTCATGTTTTTGTAGTCAAAACAGATGTGTATAGGAAGCGTTACTAGATTTTAGTTCTCAAAGTCTGAAGAATGTAGGATACGGAATACATTCAGTTTTTAGACGATTTTCGTGGGAACTTTTAAAGAGTTGAGAAATATTTGAAGTTGCTCAATGATGCTCCAAATCTGATAAAAACTATGTGGATAAAAACCAAAGAGAGTTTTGTATAAGGATTGTGAGAATAAAACTAATGAAAAGGTTTTGGATTTTGTGAATGAAACAAAAATGGCTCATGAATATTAAGATTTCCTAATTTCGGAGGCTTGGCCCGGCGGGCCTGTCATTTCACAAATTTTGAAAATTTCAAAAAACACATAAGGGGAGACCCTTATGTGATTTTTTTCGATCAAAACATTTTTTTCGAGTTTTTTGAAAATATTTTTTGATCAAACTGACAAACAATCCAAAATAACAAAAAAAATGAAGAA</canonical>
            <polymorphic>TTAGTCATTCTCTTGAAATTATGGTATCACATATTTTGCGTTATCAGACGTTAATCAAATAACGTAATTCAGTCGGCGGCTCAAAATATTTTCGTCAAAAGTTCAAATCCCCGAGAGGCTTCAACGGGGGAAAATAATATCAAATCCCAAAAATTTATAATCCTTATTGGTTTAATCTGCAGCTAGTGCATTTTCTTCGACGGAGTTTGTGCTCCCGATTTTCATTTCTACTGAGGGGATAATCGTTTGATCAGGAAGATGATGTGTAGAGAAATGAAATTTGTGCTAAATACACTATTTGTTTTTCTTGTGGGGAGAGCCGTTTGATCAGACAAGTGATGTGTGTGAAGAAGTGTAATGTTGACGCTGTCTGTAAAATCAGAAGAATCAGTAGCGAAGAAGGAAATTATGTTTCTGAACTCTCAAGAACAGGGAAGTGCAAGAAAAATTATCCCGATTTGTTTCAAACAGAGATCACGGTTTCTCCAAAAGCAAAAATYGTGGTCTCTATAGACCCTCATGAAAATTTTCTCATGTTTTTGTAGTCAAAACAGATGTGTATAGGAAGCGTTACTAGATTTTAGTTCTCAAAGTCTGAAGAATGTAGGATACGGAATACATTCAGTTTTTAGACGATTTTCGTGGGAACTTTTAAAGAGTTGAGAAATATTTGAAGTTGCTCAATGATGCTCCAAATCTGATAAAAACTATGTGGATAAAAACCAAAGAGAGTTTTGTATAAGGATTGTGAGAATAAAACTAATGAAAAGGTTTTGGATTTTGTGAATGAAACAAAAATGGCTCATGAATATTAAGATTTCCTAATTTCGGAGGCTTGGCCCGGCGGGCCTGTCATTTCACAAATTTTGAAAATTTCAAAAAACACATAAGGGGAGACCCTTATGTGATTTTTTTCGATCAAAACATTTTTTTCGAGTTTTTTGAAAATATTTTTTGATCAAACTGACAAACAATCCAAAATAACAAAAAAAATGAAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>299 129 127 126 86 50 49 42 39 28 16 9</canonical_bands>
                <polymorphic_bands>299 129 127 126 86 78 49 42 39 16 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAATGTTGACGCTGTCTGTAA</pcr_primer_p1>
		<pcr_primer_p2>CATTCTTCAGACTTTGAGAACTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAATGTTGACGCTGTCTGTAAAATCAGAAGAATCAGTAGCGAAGAAGGAAATTATGTTTCTGAACTCTCAAGAACAGGGAAGTGCAAGAAAAATTATCCCGATTTGTTTCAAACAGAGATCACGGTTTCTCCAAAAGCAAAAATTGTGGTCTCTATAGACCCTCATGAAAATTTTCTCATGTTTTTGTAGTCAAAACAGATGTGTATAGGAAGCGTTACTAGATTTTAGTTCTCAAAGTCTGAAGAATG</canonical_amplicon>
		<polymorphic_amplicon>GTAATGTTGACGCTGTCTGTAAAATCAGAAGAATCAGTAGCGAAGAAGGAAATTATGTTTCTGAACTCTCAAGAACAGGGAAGTGCAAGAAAAATTATCCCGATTTGTTTCAAACAGAGATCACGGTTTCTCCAAAAGCAAAAATYGTGGTCTCTATAGACCCTCATGAAAATTTTCTCATGTTTTTGTAGTCAAAACAGATGTGTATAGGAAGCGTTACTAGATTTTAGTTCTCAAAGTCTGAAGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35852</snp_id>
        <super_contig>c010200687.Contig1</super_contig>
        <contig_pos>33830</contig_pos>
        <strand>+</strand>
        <context>TTTTAGACGA[A/T]TTTCGTGGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCAAAGTCTGAAGAATGTAGGATACGGAATACATTCAGTTTTTAGACGA</left_flank>
        <right_flank>TTTCGTGGGAACTTTTAAAGAGTTGAGAAATATTTGAAGTTGCTCAATGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCAAATCCCAAAAATTTATAATCCTTATTGGTTTAATCTGCAGCTAGTGCATTTTCTTCGACGGAGTTTGTGCTCCCGATTTTCATTTCTACTGAGGGGATAATCGTTTGATCAGGAAGATGATGTGTAGAGAAATGAAATTTGTGCTAAATACACTATTTGTTTTTCTTGTGGGGAGAGCCGTTTGATCAGACAAGTGATGTGTGTGAAGAAGTGTAATGTTGACGCTGTCTGTAAAATCAGAAGAATCAGTAGCGAAGAAGGAAATTATGTTTCTGAACTCTCAAGAACAGGGAAGTGCAAGAAAAATTATCCCGATTTGTTTCAAACAGAGATCACGGTTTCTCCAAAAGCAAAAATTGTGGTCTCTATAGACCCTCATGAAAATTTTCTCATGTTTTTGTAGTCAAAACAGATGTGTATAGGAAGCGTTACTAGATTTTAGTTCTCAAAGTCTGAAGAATGTAGGATACGGAATACATTCAGTTTTTAGACGATTTTCGTGGGAACTTTTAAAGAGTTGAGAAATATTTGAAGTTGCTCAATGATGCTCCAAATCTGATAAAAACTATGTGGATAAAAACCAAAGAGAGTTTTGTATAAGGATTGTGAGAATAAAACTAATGAAAAGGTTTTGGATTTTGTGAATGAAACAAAAATGGCTCATGAATATTAAGATTTCCTAATTTCGGAGGCTTGGCCCGGCGGGCCTGTCATTTCACAAATTTTGAAAATTTCAAAAAACACATAAGGGGAGACCCTTATGTGATTTTTTTCGATCAAAACATTTTTTTCGAGTTTTTTGAAAATATTTTTTGATCAAACTGACAAACAATCCAAAATAACAAAAAAAATGAAGAAAATTATATTGAGAGCTCAAAATTTGGCTAAAAAATACATAATTTTTAGATACCGGGCCTTCCGGGCCGGGCCCGGGCCTCAAAAATTTCCTCAGGCCCGGAATTTTACAAGTATGGTTAAGAGTAATCCCATCCATG</canonical>
            <polymorphic>TATCAAATCCCAAAAATTTATAATCCTTATTGGTTTAATCTGCAGCTAGTGCATTTTCTTCGACGGAGTTTGTGCTCCCGATTTTCATTTCTACTGAGGGGATAATCGTTTGATCAGGAAGATGATGTGTAGAGAAATGAAATTTGTGCTAAATACACTATTTGTTTTTCTTGTGGGGAGAGCCGTTTGATCAGACAAGTGATGTGTGTGAAGAAGTGTAATGTTGACGCTGTCTGTAAAATCAGAAGAATCAGTAGCGAAGAAGGAAATTATGTTTCTGAACTCTCAAGAACAGGGAAGTGCAAGAAAAATTATCCCGATTTGTTTCAAACAGAGATCACGGTTTCTCCAAAAGCAAAAATTGTGGTCTCTATAGACCCTCATGAAAATTTTCTCATGTTTTTGTAGTCAAAACAGATGTGTATAGGAAGCGTTACTAGATTTTAGTTCTCAAAGTCTGAAGAATGTAGGATACGGAATACATTCAGTTTTTAGACGAWTTTCGTGGGAACTTTTAAAGAGTTGAGAAATATTTGAAGTTGCTCAATGATGCTCCAAATCTGATAAAAACTATGTGGATAAAAACCAAAGAGAGTTTTGTATAAGGATTGTGAGAATAAAACTAATGAAAAGGTTTTGGATTTTGTGAATGAAACAAAAATGGCTCATGAATATTAAGATTTCCTAATTTCGGAGGCTTGGCCCGGCGGGCCTGTCATTTCACAAATTTTGAAAATTTCAAAAAACACATAAGGGGAGACCCTTATGTGATTTTTTTCGATCAAAACATTTTTTTCGAGTTTTTTGAAAATATTTTTTGATCAAACTGACAAACAATCCAAAATAACAAAAAAAATGAAGAAAATTATATTGAGAGCTCAAAATTTGGCTAAAAAATACATAATTTTTAGATACCGGGCCTTCCGGGCCGGGCCCGGGCCTCAAAAATTTCCTCAGGCCCGGAATTTTACAAGTATGGTTAAGAGTAATCCCATCCATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGATGTGTATAGGAAGCGTTA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTGTTTCATTCACAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAGATGTGTATAGGAAGCGTTACTAGATTTTAGTTCTCAAAGTCTGAAGAATGTAGGATACGGAATACATTCAGTTTTTAGACGATTTTCGTGGGAACTTTTAAAGAGTTGAGAAATATTTGAAGTTGCTCAATGATGCTCCAAATCTGATAAAAACTATGTGGATAAAAACCAAAGAGAGTTTTGTATAAGGATTGTGAGAATAAAACTAATGAAAAGGTTTTGGATTTTGTGAATGAAACAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>ACAGATGTGTATAGGAAGCGTTACTAGATTTTAGTTCTCAAAGTCTGAAGAATGTAGGATACGGAATACATTCAGTTTTTAGACGAWTTTCGTGGGAACTTTTAAAGAGTTGAGAAATATTTGAAGTTGCTCAATGATGCTCCAAATCTGATAAAAACTATGTGGATAAAAACCAAAGAGAGTTTTGTATAAGGATTGTGAGAATAAAACTAATGAAAAGGTTTTGGATTTTGTGAATGAAACAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35853</snp_id>
        <super_contig>c010200687.Contig1</super_contig>
        <contig_pos>43722</contig_pos>
        <strand>+</strand>
        <context>TCTTTGTTTA[A/G]TGTTTTTGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGAATGAAATTGAAGGCAAGGGTAAGTGAGCAGCGAATTCTTTGTTTA</left_flank>
        <right_flank>TGTTTTTGATTTTGATCAAATTGAATAACCAGATTTTGCGATCCAATATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTTGTTCGAAGACATCTCAGTCCCCGACAAATTCAGTTTTTCCAACATGTTCTAAAACCACACTCGTTCCCATGGAAAACTCCTTCCGAAAGTGTGTAATATGCAAACGTCCAGCATTCAGTCACAATTATGGTGTCCTTTCCTGTGACGCTTGTAAAATGTTTTTTCGACGCGTCGTGACCCTCAATCGAGATTACCAGTGCAAGAAGGGTGGGGCATGTACACCGAAGGAAAAAACAACAACTTGCAAAGGATGCCGATTTAAATTGTGCCAAGATTCGGGAATGACTTTTCAACCCAATTTTATGGATTTGAAGGACACGGATCAAAAAATTGATGTGACTAACATTCTTGGAGTACTGTTGTTTTTGGATGCCAGGAGAAGTAAACAAATGAAAACACAGTTCACAGATGAGAATTTCTCATTGGTTCAGGTCTTGGAGAATAGAAGAATGAAATTGAAGGCAAGGGTAAGTGAGCAGCGAATTCTTTGTTTAATGTTTTTGATTTTGATCAAATTGAATAACCAGATTTTGCGATCCAATATTTCTTCGTGAATTTTTCCGCATTTCCTATAAACTCCAAAAAATTTCCAGAGAGTTCAAAACTTGACTAGCCATGACTGGTCCTTTTTTGGGATTTACACCTCTATCGAATTTTTCATGTCGTTAGATTTTATGGCAGATGAGCGTTTGCAAACAAAAGATAAGGTGAGAATTCGTAACGAAAACGAAATAACCCGAGGATTTTTTCAGAAAATTCTTATAAGCAGTTTCTGCGTCAAAGCATCGTTATTTGCCAGTGCTATGAGAGCAGTGAAGGAGAAGCGAGATAAGCTGATGACTGTTGACGGGAAGGATGTTTATCCGGATGAAATTATGAAGTAAGTTTATTTTATTCGTTTTATTTTTTTTTGGGTATTTTTTTTTATACTTACTGTTGCATGATAACCTATAAAAATCAAATAAAAATAATTTTTAGTTAAAACGGGAGAAGTG</canonical>
            <polymorphic>CTCTTGTTCGAAGACATCTCAGTCCCCGACAAATTCAGTTTTTCCAACATGTTCTAAAACCACACTCGTTCCCATGGAAAACTCCTTCCGAAAGTGTGTAATATGCAAACGTCCAGCATTCAGTCACAATTATGGTGTCCTTTCCTGTGACGCTTGTAAAATGTTTTTTCGACGCGTCGTGACCCTCAATCGAGATTACCAGTGCAAGAAGGGTGGGGCATGTACACCGAAGGAAAAAACAACAACTTGCAAAGGATGCCGATTTAAATTGTGCCAAGATTCGGGAATGACTTTTCAACCCAATTTTATGGATTTGAAGGACACGGATCAAAAAATTGATGTGACTAACATTCTTGGAGTACTGTTGTTTTTGGATGCCAGGAGAAGTAAACAAATGAAAACACAGTTCACAGATGAGAATTTCTCATTGGTTCAGGTCTTGGAGAATAGAAGAATGAAATTGAAGGCAAGGGTAAGTGAGCAGCGAATTCTTTGTTTARTGTTTTTGATTTTGATCAAATTGAATAACCAGATTTTGCGATCCAATATTTCTTCGTGAATTTTTCCGCATTTCCTATAAACTCCAAAAAATTTCCAGAGAGTTCAAAACTTGACTAGCCATGACTGGTCCTTTTTTGGGATTTACACCTCTATCGAATTTTTCATGTCGTTAGATTTTATGGCAGATGAGCGTTTGCAAACAAAAGATAAGGTGAGAATTCGTAACGAAAACGAAATAACCCGAGGATTTTTTCAGAAAATTCTTATAAGCAGTTTCTGCGTCAAAGCATCGTTATTTGCCAGTGCTATGAGAGCAGTGAAGGAGAAGCGAGATAAGCTGATGACTGTTGACGGGAAGGATGTTTATCCGGATGAAATTATGAAGTAAGTTTATTTTATTCGTTTTATTTTTTTTTGGGTATTTTTTTTTATACTTACTGTTGCATGATAACCTATAAAAATCAAATAAAAATAATTTTTAGTTAAAACGGGAGAAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>487 264 233 16</canonical_bands>
                <polymorphic_bands>720 264 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCAGGTCTTGGAGAATAGAAG</pcr_primer_p1>
		<pcr_primer_p2>AAATCTAACGACATGAAAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTCAGGTCTTGGAGAATAGAAGAATGAAATTGAAGGCAAGGGTAAGTGAGCAGCGAATTCTTTGTTTAATGTTTTTGATTTTGATCAAATTGAATAACCAGATTTTGCGATCCAATATTTCTTCGTGAATTTTTCCGCATTTCCTATAAACTCCAAAAAATTTCCAGAGAGTTCAAAACTTGACTAGCCATGACTGGTCCTTTTTTGGGATTTACACCTCTATCGAATTTTTCATGTCGTTAGATTT</canonical_amplicon>
		<polymorphic_amplicon>GTTCAGGTCTTGGAGAATAGAAGAATGAAATTGAAGGCAAGGGTAAGTGAGCAGCGAATTCTTTGTTTARTGTTTTTGATTTTGATCAAATTGAATAACCAGATTTTGCGATCCAATATTTCTTCGTGAATTTTTCCGCATTTCCTATAAACTCCAAAAAATTTCCAGAGAGTTCAAAACTTGACTAGCCATGACTGGTCCTTTTTTGGGATTTACACCTCTATCGAATTTTTCATGTCGTTAGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35854</snp_id>
        <super_contig>c010200687.Contig1</super_contig>
        <contig_pos>43799</contig_pos>
        <strand>+</strand>
        <context>CGCATTTCCT[A/G]TAAACTCCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACCAGATTTTGCGATCCAATATTTCTTCGTGAATTTTTCCGCATTTCCT</left_flank>
        <right_flank>TAAACTCCAAAAAATTTCCAGAGAGTTCAAAACTTGACTAGCCATGACTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACTCCTTCCGAAAGTGTGTAATATGCAAACGTCCAGCATTCAGTCACAATTATGGTGTCCTTTCCTGTGACGCTTGTAAAATGTTTTTTCGACGCGTCGTGACCCTCAATCGAGATTACCAGTGCAAGAAGGGTGGGGCATGTACACCGAAGGAAAAAACAACAACTTGCAAAGGATGCCGATTTAAATTGTGCCAAGATTCGGGAATGACTTTTCAACCCAATTTTATGGATTTGAAGGACACGGATCAAAAAATTGATGTGACTAACATTCTTGGAGTACTGTTGTTTTTGGATGCCAGGAGAAGTAAACAAATGAAAACACAGTTCACAGATGAGAATTTCTCATTGGTTCAGGTCTTGGAGAATAGAAGAATGAAATTGAAGGCAAGGGTAAGTGAGCAGCGAATTCTTTGTTTAATGTTTTTGATTTTGATCAAATTGAATAACCAGATTTTGCGATCCAATATTTCTTCGTGAATTTTTCCGCATTTCCTATAAACTCCAAAAAATTTCCAGAGAGTTCAAAACTTGACTAGCCATGACTGGTCCTTTTTTGGGATTTACACCTCTATCGAATTTTTCATGTCGTTAGATTTTATGGCAGATGAGCGTTTGCAAACAAAAGATAAGGTGAGAATTCGTAACGAAAACGAAATAACCCGAGGATTTTTTCAGAAAATTCTTATAAGCAGTTTCTGCGTCAAAGCATCGTTATTTGCCAGTGCTATGAGAGCAGTGAAGGAGAAGCGAGATAAGCTGATGACTGTTGACGGGAAGGATGTTTATCCGGATGAAATTATGAAGTAAGTTTATTTTATTCGTTTTATTTTTTTTTGGGTATTTTTTTTTATACTTACTGTTGCATGATAACCTATAAAAATCAAATAAAAATAATTTTTAGTTAAAACGGGAGAAGTGAAAACTGAATATTAGTGTTAGTGGTTGGCAGAATTTAATTAAAAAATCATTCAGATCAGAGTCGCATGCCGTTAGAC</canonical>
            <polymorphic>AAAACTCCTTCCGAAAGTGTGTAATATGCAAACGTCCAGCATTCAGTCACAATTATGGTGTCCTTTCCTGTGACGCTTGTAAAATGTTTTTTCGACGCGTCGTGACCCTCAATCGAGATTACCAGTGCAAGAAGGGTGGGGCATGTACACCGAAGGAAAAAACAACAACTTGCAAAGGATGCCGATTTAAATTGTGCCAAGATTCGGGAATGACTTTTCAACCCAATTTTATGGATTTGAAGGACACGGATCAAAAAATTGATGTGACTAACATTCTTGGAGTACTGTTGTTTTTGGATGCCAGGAGAAGTAAACAAATGAAAACACAGTTCACAGATGAGAATTTCTCATTGGTTCAGGTCTTGGAGAATAGAAGAATGAAATTGAAGGCAAGGGTAAGTGAGCAGCGAATTCTTTGTTTAATGTTTTTGATTTTGATCAAATTGAATAACCAGATTTTGCGATCCAATATTTCTTCGTGAATTTTTCCGCATTTCCTRTAAACTCCAAAAAATTTCCAGAGAGTTCAAAACTTGACTAGCCATGACTGGTCCTTTTTTGGGATTTACACCTCTATCGAATTTTTCATGTCGTTAGATTTTATGGCAGATGAGCGTTTGCAAACAAAAGATAAGGTGAGAATTCGTAACGAAAACGAAATAACCCGAGGATTTTTTCAGAAAATTCTTATAAGCAGTTTCTGCGTCAAAGCATCGTTATTTGCCAGTGCTATGAGAGCAGTGAAGGAGAAGCGAGATAAGCTGATGACTGTTGACGGGAAGGATGTTTATCCGGATGAAATTATGAAGTAAGTTTATTTTATTCGTTTTATTTTTTTTTGGGTATTTTTTTTTATACTTACTGTTGCATGATAACCTATAAAAATCAAATAAAAATAATTTTTAGTTAAAACGGGAGAAGTGAAAACTGAATATTAGTGTTAGTGGTTGGCAGAATTTAATTAAAAAATCATTCAGATCAGAGTCGCATGCCGTTAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCAGGTCTTGGAGAATAGAAG</pcr_primer_p1>
		<pcr_primer_p2>AAATCTAACGACATGAAAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTCAGGTCTTGGAGAATAGAAGAATGAAATTGAAGGCAAGGGTAAGTGAGCAGCGAATTCTTTGTTTAATGTTTTTGATTTTGATCAAATTGAATAACCAGATTTTGCGATCCAATATTTCTTCGTGAATTTTTCCGCATTTCCTATAAACTCCAAAAAATTTCCAGAGAGTTCAAAACTTGACTAGCCATGACTGGTCCTTTTTTGGGATTTACACCTCTATCGAATTTTTCATGTCGTTAGATTT</canonical_amplicon>
		<polymorphic_amplicon>GTTCAGGTCTTGGAGAATAGAAGAATGAAATTGAAGGCAAGGGTAAGTGAGCAGCGAATTCTTTGTTTAATGTTTTTGATTTTGATCAAATTGAATAACCAGATTTTGCGATCCAATATTTCTTCGTGAATTTTTCCGCATTTCCTRTAAACTCCAAAAAATTTCCAGAGAGTTCAAAACTTGACTAGCCATGACTGGTCCTTTTTTGGGATTTACACCTCTATCGAATTTTTCATGTCGTTAGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35855</snp_id>
        <super_contig>c010200687.Contig1</super_contig>
        <contig_pos>43825</contig_pos>
        <strand>+</strand>
        <context>TTCCAGAGAG[C/T]TCAAAACTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCGTGAATTTTTCCGCATTTCCTATAAACTCCAAAAAATTTCCAGAGAG</left_flank>
        <right_flank>TCAAAACTTGACTAGCCATGACTGGTCCTTTTTTGGGATTTACACCTCTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCAAACGTCCAGCATTCAGTCACAATTATGGTGTCCTTTCCTGTGACGCTTGTAAAATGTTTTTTCGACGCGTCGTGACCCTCAATCGAGATTACCAGTGCAAGAAGGGTGGGGCATGTACACCGAAGGAAAAAACAACAACTTGCAAAGGATGCCGATTTAAATTGTGCCAAGATTCGGGAATGACTTTTCAACCCAATTTTATGGATTTGAAGGACACGGATCAAAAAATTGATGTGACTAACATTCTTGGAGTACTGTTGTTTTTGGATGCCAGGAGAAGTAAACAAATGAAAACACAGTTCACAGATGAGAATTTCTCATTGGTTCAGGTCTTGGAGAATAGAAGAATGAAATTGAAGGCAAGGGTAAGTGAGCAGCGAATTCTTTGTTTAATGTTTTTGATTTTGATCAAATTGAATAACCAGATTTTGCGATCCAATATTTCTTCGTGAATTTTTCCGCATTTCCTATAAACTCCAAAAAATTTCCAGAGAGTTCAAAACTTGACTAGCCATGACTGGTCCTTTTTTGGGATTTACACCTCTATCGAATTTTTCATGTCGTTAGATTTTATGGCAGATGAGCGTTTGCAAACAAAAGATAAGGTGAGAATTCGTAACGAAAACGAAATAACCCGAGGATTTTTTCAGAAAATTCTTATAAGCAGTTTCTGCGTCAAAGCATCGTTATTTGCCAGTGCTATGAGAGCAGTGAAGGAGAAGCGAGATAAGCTGATGACTGTTGACGGGAAGGATGTTTATCCGGATGAAATTATGAAGTAAGTTTATTTTATTCGTTTTATTTTTTTTTGGGTATTTTTTTTTATACTTACTGTTGCATGATAACCTATAAAAATCAAATAAAAATAATTTTTAGTTAAAACGGGAGAAGTGAAAACTGAATATTAGTGTTAGTGGTTGGCAGAATTTAATTAAAAAATCATTCAGATCAGAGTCGCATGCCGTTAGACCTGTAAAAAACTTGTCCCCATATGTT</canonical>
            <polymorphic>TGCAAACGTCCAGCATTCAGTCACAATTATGGTGTCCTTTCCTGTGACGCTTGTAAAATGTTTTTTCGACGCGTCGTGACCCTCAATCGAGATTACCAGTGCAAGAAGGGTGGGGCATGTACACCGAAGGAAAAAACAACAACTTGCAAAGGATGCCGATTTAAATTGTGCCAAGATTCGGGAATGACTTTTCAACCCAATTTTATGGATTTGAAGGACACGGATCAAAAAATTGATGTGACTAACATTCTTGGAGTACTGTTGTTTTTGGATGCCAGGAGAAGTAAACAAATGAAAACACAGTTCACAGATGAGAATTTCTCATTGGTTCAGGTCTTGGAGAATAGAAGAATGAAATTGAAGGCAAGGGTAAGTGAGCAGCGAATTCTTTGTTTAATGTTTTTGATTTTGATCAAATTGAATAACCAGATTTTGCGATCCAATATTTCTTCGTGAATTTTTCCGCATTTCCTATAAACTCCAAAAAATTTCCAGAGAGYTCAAAACTTGACTAGCCATGACTGGTCCTTTTTTGGGATTTACACCTCTATCGAATTTTTCATGTCGTTAGATTTTATGGCAGATGAGCGTTTGCAAACAAAAGATAAGGTGAGAATTCGTAACGAAAACGAAATAACCCGAGGATTTTTTCAGAAAATTCTTATAAGCAGTTTCTGCGTCAAAGCATCGTTATTTGCCAGTGCTATGAGAGCAGTGAAGGAGAAGCGAGATAAGCTGATGACTGTTGACGGGAAGGATGTTTATCCGGATGAAATTATGAAGTAAGTTTATTTTATTCGTTTTATTTTTTTTTGGGTATTTTTTTTTATACTTACTGTTGCATGATAACCTATAAAAATCAAATAAAAATAATTTTTAGTTAAAACGGGAGAAGTGAAAACTGAATATTAGTGTTAGTGGTTGGCAGAATTTAATTAAAAAATCATTCAGATCAGAGTCGCATGCCGTTAGACCTGTAAAAAACTTGTCCCCATATGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCAGGTCTTGGAGAATAGAAG</pcr_primer_p1>
		<pcr_primer_p2>AAATCTAACGACATGAAAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTCAGGTCTTGGAGAATAGAAGAATGAAATTGAAGGCAAGGGTAAGTGAGCAGCGAATTCTTTGTTTAATGTTTTTGATTTTGATCAAATTGAATAACCAGATTTTGCGATCCAATATTTCTTCGTGAATTTTTCCGCATTTCCTATAAACTCCAAAAAATTTCCAGAGAGTTCAAAACTTGACTAGCCATGACTGGTCCTTTTTTGGGATTTACACCTCTATCGAATTTTTCATGTCGTTAGATTT</canonical_amplicon>
		<polymorphic_amplicon>GTTCAGGTCTTGGAGAATAGAAGAATGAAATTGAAGGCAAGGGTAAGTGAGCAGCGAATTCTTTGTTTAATGTTTTTGATTTTGATCAAATTGAATAACCAGATTTTGCGATCCAATATTTCTTCGTGAATTTTTCCGCATTTCCTATAAACTCCAAAAAATTTCCAGAGAGYTCAAAACTTGACTAGCCATGACTGGTCCTTTTTTGGGATTTACACCTCTATCGAATTTTTCATGTCGTTAGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35856</snp_id>
        <super_contig>c010200687.Contig1</super_contig>
        <contig_pos>43901</contig_pos>
        <strand>+</strand>
        <context>CGTTAGATTT[C/T]ATGGCAGATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCTTTTTTGGGATTTACACCTCTATCGAATTTTTCATGTCGTTAGATTT</left_flank>
        <right_flank>ATGGCAGATGAGCGTTTGCAAACAAAAGATAAGGTGAGAATTCGTAACGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACCCTCAATCGAGATTACCAGTGCAAGAAGGGTGGGGCATGTACACCGAAGGAAAAAACAACAACTTGCAAAGGATGCCGATTTAAATTGTGCCAAGATTCGGGAATGACTTTTCAACCCAATTTTATGGATTTGAAGGACACGGATCAAAAAATTGATGTGACTAACATTCTTGGAGTACTGTTGTTTTTGGATGCCAGGAGAAGTAAACAAATGAAAACACAGTTCACAGATGAGAATTTCTCATTGGTTCAGGTCTTGGAGAATAGAAGAATGAAATTGAAGGCAAGGGTAAGTGAGCAGCGAATTCTTTGTTTAATGTTTTTGATTTTGATCAAATTGAATAACCAGATTTTGCGATCCAATATTTCTTCGTGAATTTTTCCGCATTTCCTATAAACTCCAAAAAATTTCCAGAGAGTTCAAAACTTGACTAGCCATGACTGGTCCTTTTTTGGGATTTACACCTCTATCGAATTTTTCATGTCGTTAGATTTTATGGCAGATGAGCGTTTGCAAACAAAAGATAAGGTGAGAATTCGTAACGAAAACGAAATAACCCGAGGATTTTTTCAGAAAATTCTTATAAGCAGTTTCTGCGTCAAAGCATCGTTATTTGCCAGTGCTATGAGAGCAGTGAAGGAGAAGCGAGATAAGCTGATGACTGTTGACGGGAAGGATGTTTATCCGGATGAAATTATGAAGTAAGTTTATTTTATTCGTTTTATTTTTTTTTGGGTATTTTTTTTTATACTTACTGTTGCATGATAACCTATAAAAATCAAATAAAAATAATTTTTAGTTAAAACGGGAGAAGTGAAAACTGAATATTAGTGTTAGTGGTTGGCAGAATTTAATTAAAAAATCATTCAGATCAGAGTCGCATGCCGTTAGACCTGTAAAAAACTTGTCCCCATATGTTTAAATATTGAACATTCAACATGGCTGTCGGCTTTTTGATATATTCTGAAAACCAGAAAACCAGAAAAACAGGCCTA</canonical>
            <polymorphic>TGACCCTCAATCGAGATTACCAGTGCAAGAAGGGTGGGGCATGTACACCGAAGGAAAAAACAACAACTTGCAAAGGATGCCGATTTAAATTGTGCCAAGATTCGGGAATGACTTTTCAACCCAATTTTATGGATTTGAAGGACACGGATCAAAAAATTGATGTGACTAACATTCTTGGAGTACTGTTGTTTTTGGATGCCAGGAGAAGTAAACAAATGAAAACACAGTTCACAGATGAGAATTTCTCATTGGTTCAGGTCTTGGAGAATAGAAGAATGAAATTGAAGGCAAGGGTAAGTGAGCAGCGAATTCTTTGTTTAATGTTTTTGATTTTGATCAAATTGAATAACCAGATTTTGCGATCCAATATTTCTTCGTGAATTTTTCCGCATTTCCTATAAACTCCAAAAAATTTCCAGAGAGTTCAAAACTTGACTAGCCATGACTGGTCCTTTTTTGGGATTTACACCTCTATCGAATTTTTCATGTCGTTAGATTTYATGGCAGATGAGCGTTTGCAAACAAAAGATAAGGTGAGAATTCGTAACGAAAACGAAATAACCCGAGGATTTTTTCAGAAAATTCTTATAAGCAGTTTCTGCGTCAAAGCATCGTTATTTGCCAGTGCTATGAGAGCAGTGAAGGAGAAGCGAGATAAGCTGATGACTGTTGACGGGAAGGATGTTTATCCGGATGAAATTATGAAGTAAGTTTATTTTATTCGTTTTATTTTTTTTTGGGTATTTTTTTTTATACTTACTGTTGCATGATAACCTATAAAAATCAAATAAAAATAATTTTTAGTTAAAACGGGAGAAGTGAAAACTGAATATTAGTGTTAGTGGTTGGCAGAATTTAATTAAAAAATCATTCAGATCAGAGTCGCATGCCGTTAGACCTGTAAAAAACTTGTCCCCATATGTTTAAATATTGAACATTCAACATGGCTGTCGGCTTTTTGATATATTCTGAAAACCAGAAAACCAGAAAAACAGGCCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATATTTCTTCGTGAATTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTGACGCAGAAACTGCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CAATATTTCTTCGTGAATTTTTCCGCATTTCCTATAAACTCCAAAAAATTTCCAGAGAGTTCAAAACTTGACTAGCCATGACTGGTCCTTTTTTGGGATTTACACCTCTATCGAATTTTTCATGTCGTTAGATTTTATGGCAGATGAGCGTTTGCAAACAAAAGATAAGGTGAGAATTCGTAACGAAAACGAAATAACCCGAGGATTTTTTCAGAAAATTCTTATAAGCAGTTTCTGCGTCAA</canonical_amplicon>
		<polymorphic_amplicon>CAATATTTCTTCGTGAATTTTTCCGCATTTCCTATAAACTCCAAAAAATTTCCAGAGAGTTCAAAACTTGACTAGCCATGACTGGTCCTTTTTTGGGATTTACACCTCTATCGAATTTTTCATGTCGTTAGATTTYATGGCAGATGAGCGTTTGCAAACAAAAGATAAGGTGAGAATTCGTAACGAAAACGAAATAACCCGAGGATTTTTTCAGAAAATTCTTATAAGCAGTTTCTGCGTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35857</snp_id>
        <super_contig>c010200687.Contig1</super_contig>
        <contig_pos>44068</contig_pos>
        <strand>+</strand>
        <context>AAGCTGATGA[A/C]TGTTGACGGG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTGCCAGTGCTATGAGAGCAGTGAAGGAGAAGCGAGATAAGCTGATGA</left_flank>
        <right_flank>TGTTGACGGGAAGGATGTTTATCCGGATGAAATTATGAAGTAAGTTTATT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACATTCTTGGAGTACTGTTGTTTTTGGATGCCAGGAGAAGTAAACAAATGAAAACACAGTTCACAGATGAGAATTTCTCATTGGTTCAGGTCTTGGAGAATAGAAGAATGAAATTGAAGGCAAGGGTAAGTGAGCAGCGAATTCTTTGTTTAATGTTTTTGATTTTGATCAAATTGAATAACCAGATTTTGCGATCCAATATTTCTTCGTGAATTTTTCCGCATTTCCTATAAACTCCAAAAAATTTCCAGAGAGTTCAAAACTTGACTAGCCATGACTGGTCCTTTTTTGGGATTTACACCTCTATCGAATTTTTCATGTCGTTAGATTTTATGGCAGATGAGCGTTTGCAAACAAAAGATAAGGTGAGAATTCGTAACGAAAACGAAATAACCCGAGGATTTTTTCAGAAAATTCTTATAAGCAGTTTCTGCGTCAAAGCATCGTTATTTGCCAGTGCTATGAGAGCAGTGAAGGAGAAGCGAGATAAGCTGATGACTGTTGACGGGAAGGATGTTTATCCGGATGAAATTATGAAGTAAGTTTATTTTATTCGTTTTATTTTTTTTTGGGTATTTTTTTTTATACTTACTGTTGCATGATAACCTATAAAAATCAAATAAAAATAATTTTTAGTTAAAACGGGAGAAGTGAAAACTGAATATTAGTGTTAGTGGTTGGCAGAATTTAATTAAAAAATCATTCAGATCAGAGTCGCATGCCGTTAGACCTGTAAAAAACTTGTCCCCATATGTTTAAATATTGAACATTCAACATGGCTGTCGGCTTTTTGATATATTCTGAAAACCAGAAAACCAGAAAAACAGGCCTAAAGTGATCTTTGTTTGTGTTGTTTCGTGTTTCTTTTTTCTTCGCACCAATCTTTTTTTTATCTCATTAAAAACCTTTTTGTATGATCACATTTAGAAGTTATTTTTACCACAGGATCACATTCCTAAACACCTCTCTAATTTTTCTTCCTGGTTTTGCGTCATGCTA</canonical>
            <polymorphic>AACATTCTTGGAGTACTGTTGTTTTTGGATGCCAGGAGAAGTAAACAAATGAAAACACAGTTCACAGATGAGAATTTCTCATTGGTTCAGGTCTTGGAGAATAGAAGAATGAAATTGAAGGCAAGGGTAAGTGAGCAGCGAATTCTTTGTTTAATGTTTTTGATTTTGATCAAATTGAATAACCAGATTTTGCGATCCAATATTTCTTCGTGAATTTTTCCGCATTTCCTATAAACTCCAAAAAATTTCCAGAGAGTTCAAAACTTGACTAGCCATGACTGGTCCTTTTTTGGGATTTACACCTCTATCGAATTTTTCATGTCGTTAGATTTTATGGCAGATGAGCGTTTGCAAACAAAAGATAAGGTGAGAATTCGTAACGAAAACGAAATAACCCGAGGATTTTTTCAGAAAATTCTTATAAGCAGTTTCTGCGTCAAAGCATCGTTATTTGCCAGTGCTATGAGAGCAGTGAAGGAGAAGCGAGATAAGCTGATGAMTGTTGACGGGAAGGATGTTTATCCGGATGAAATTATGAAGTAAGTTTATTTTATTCGTTTTATTTTTTTTTGGGTATTTTTTTTTATACTTACTGTTGCATGATAACCTATAAAAATCAAATAAAAATAATTTTTAGTTAAAACGGGAGAAGTGAAAACTGAATATTAGTGTTAGTGGTTGGCAGAATTTAATTAAAAAATCATTCAGATCAGAGTCGCATGCCGTTAGACCTGTAAAAAACTTGTCCCCATATGTTTAAATATTGAACATTCAACATGGCTGTCGGCTTTTTGATATATTCTGAAAACCAGAAAACCAGAAAAACAGGCCTAAAGTGATCTTTGTTTGTGTTGTTTCGTGTTTCTTTTTTCTTCGCACCAATCTTTTTTTTATCTCATTAAAAACCTTTTTGTATGATCACATTTAGAAGTTATTTTTACCACAGGATCACATTCCTAAACACCTCTCTAATTTTTCTTCCTGGTTTTGCGTCATGCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>442 406 93 42 17</canonical_bands>
                <polymorphic_bands>535 406 42 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTATTTGCCAGTGCTATGAG</pcr_primer_p1>
		<pcr_primer_p2>TAATTAAATTCTGCCAACCACTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTATTTGCCAGTGCTATGAGAGCAGTGAAGGAGAAGCGAGATAAGCTGATGACTGTTGACGGGAAGGATGTTTATCCGGATGAAATTATGAAGTAAGTTTATTTTATTCGTTTTATTTTTTTTTGGGTATTTTTTTTTATACTTACTGTTGCATGATAACCTATAAAAATCAAATAAAAATAATTTTTAGTTAAAACGGGAGAAGTGAAAACTGAATATTAGTGTTAGTGGTTGGCAGAATTTAATTA</canonical_amplicon>
		<polymorphic_amplicon>GTTATTTGCCAGTGCTATGAGAGCAGTGAAGGAGAAGCGAGATAAGCTGATGAMTGTTGACGGGAAGGATGTTTATCCGGATGAAATTATGAAGTAAGTTTATTTTATTCGTTTTATTTTTTTTTGGGTATTTTTTTTTATACTTACTGTTGCATGATAACCTATAAAAATCAAATAAAAATAATTTTTAGTTAAAACGGGAGAAGTGAAAACTGAATATTAGTGTTAGTGGTTGGCAGAATTTAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35858</snp_id>
        <super_contig>c010200687.Contig1</super_contig>
        <contig_pos>44081</contig_pos>
        <strand>+</strand>
        <context>TTGACGGGAA[A/G]GATGTTTATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGAGAGCAGTGAAGGAGAAGCGAGATAAGCTGATGACTGTTGACGGGAA</left_flank>
        <right_flank>GATGTTTATCCGGATGAAATTATGAAGTAAGTTTATTTTATTCGTTTTAT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTGTTGTTTTTGGATGCCAGGAGAAGTAAACAAATGAAAACACAGTTCACAGATGAGAATTTCTCATTGGTTCAGGTCTTGGAGAATAGAAGAATGAAATTGAAGGCAAGGGTAAGTGAGCAGCGAATTCTTTGTTTAATGTTTTTGATTTTGATCAAATTGAATAACCAGATTTTGCGATCCAATATTTCTTCGTGAATTTTTCCGCATTTCCTATAAACTCCAAAAAATTTCCAGAGAGTTCAAAACTTGACTAGCCATGACTGGTCCTTTTTTGGGATTTACACCTCTATCGAATTTTTCATGTCGTTAGATTTTATGGCAGATGAGCGTTTGCAAACAAAAGATAAGGTGAGAATTCGTAACGAAAACGAAATAACCCGAGGATTTTTTCAGAAAATTCTTATAAGCAGTTTCTGCGTCAAAGCATCGTTATTTGCCAGTGCTATGAGAGCAGTGAAGGAGAAGCGAGATAAGCTGATGACTGTTGACGGGAAGGATGTTTATCCGGATGAAATTATGAAGTAAGTTTATTTTATTCGTTTTATTTTTTTTTGGGTATTTTTTTTTATACTTACTGTTGCATGATAACCTATAAAAATCAAATAAAAATAATTTTTAGTTAAAACGGGAGAAGTGAAAACTGAATATTAGTGTTAGTGGTTGGCAGAATTTAATTAAAAAATCATTCAGATCAGAGTCGCATGCCGTTAGACCTGTAAAAAACTTGTCCCCATATGTTTAAATATTGAACATTCAACATGGCTGTCGGCTTTTTGATATATTCTGAAAACCAGAAAACCAGAAAAACAGGCCTAAAGTGATCTTTGTTTGTGTTGTTTCGTGTTTCTTTTTTCTTCGCACCAATCTTTTTTTTATCTCATTAAAAACCTTTTTGTATGATCACATTTAGAAGTTATTTTTACCACAGGATCACATTCCTAAACACCTCTCTAATTTTTCTTCCTGGTTTTGCGTCATGCTAAACTTATCAAGAG</canonical>
            <polymorphic>TACTGTTGTTTTTGGATGCCAGGAGAAGTAAACAAATGAAAACACAGTTCACAGATGAGAATTTCTCATTGGTTCAGGTCTTGGAGAATAGAAGAATGAAATTGAAGGCAAGGGTAAGTGAGCAGCGAATTCTTTGTTTAATGTTTTTGATTTTGATCAAATTGAATAACCAGATTTTGCGATCCAATATTTCTTCGTGAATTTTTCCGCATTTCCTATAAACTCCAAAAAATTTCCAGAGAGTTCAAAACTTGACTAGCCATGACTGGTCCTTTTTTGGGATTTACACCTCTATCGAATTTTTCATGTCGTTAGATTTTATGGCAGATGAGCGTTTGCAAACAAAAGATAAGGTGAGAATTCGTAACGAAAACGAAATAACCCGAGGATTTTTTCAGAAAATTCTTATAAGCAGTTTCTGCGTCAAAGCATCGTTATTTGCCAGTGCTATGAGAGCAGTGAAGGAGAAGCGAGATAAGCTGATGACTGTTGACGGGAARGATGTTTATCCGGATGAAATTATGAAGTAAGTTTATTTTATTCGTTTTATTTTTTTTTGGGTATTTTTTTTTATACTTACTGTTGCATGATAACCTATAAAAATCAAATAAAAATAATTTTTAGTTAAAACGGGAGAAGTGAAAACTGAATATTAGTGTTAGTGGTTGGCAGAATTTAATTAAAAAATCATTCAGATCAGAGTCGCATGCCGTTAGACCTGTAAAAAACTTGTCCCCATATGTTTAAATATTGAACATTCAACATGGCTGTCGGCTTTTTGATATATTCTGAAAACCAGAAAACCAGAAAAACAGGCCTAAAGTGATCTTTGTTTGTGTTGTTTCGTGTTTCTTTTTTCTTCGCACCAATCTTTTTTTTATCTCATTAAAAACCTTTTTGTATGATCACATTTAGAAGTTATTTTTACCACAGGATCACATTCCTAAACACCTCTCTAATTTTTCTTCCTGGTTTTGCGTCATGCTAAACTTATCAAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTATTTGCCAGTGCTATGAG</pcr_primer_p1>
		<pcr_primer_p2>TAATTAAATTCTGCCAACCACTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTATTTGCCAGTGCTATGAGAGCAGTGAAGGAGAAGCGAGATAAGCTGATGACTGTTGACGGGAAGGATGTTTATCCGGATGAAATTATGAAGTAAGTTTATTTTATTCGTTTTATTTTTTTTTGGGTATTTTTTTTTATACTTACTGTTGCATGATAACCTATAAAAATCAAATAAAAATAATTTTTAGTTAAAACGGGAGAAGTGAAAACTGAATATTAGTGTTAGTGGTTGGCAGAATTTAATTA</canonical_amplicon>
		<polymorphic_amplicon>GTTATTTGCCAGTGCTATGAGAGCAGTGAAGGAGAAGCGAGATAAGCTGATGACTGTTGACGGGAARGATGTTTATCCGGATGAAATTATGAAGTAAGTTTATTTTATTCGTTTTATTTTTTTTTGGGTATTTTTTTTTATACTTACTGTTGCATGATAACCTATAAAAATCAAATAAAAATAATTTTTAGTTAAAACGGGAGAAGTGAAAACTGAATATTAGTGTTAGTGGTTGGCAGAATTTAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35859</snp_id>
        <super_contig>c010200687.Contig1</super_contig>
        <contig_pos>44093</contig_pos>
        <strand>+</strand>
        <context>ATGTTTATCC[A/G]GATGAAATTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGGAGAAGCGAGATAAGCTGATGACTGTTGACGGGAAGGATGTTTATCC</left_flank>
        <right_flank>GATGAAATTATGAAGTAAGTTTATTTTATTCGTTTTATTTTTTTTTGGGT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGATGCCAGGAGAAGTAAACAAATGAAAACACAGTTCACAGATGAGAATTTCTCATTGGTTCAGGTCTTGGAGAATAGAAGAATGAAATTGAAGGCAAGGGTAAGTGAGCAGCGAATTCTTTGTTTAATGTTTTTGATTTTGATCAAATTGAATAACCAGATTTTGCGATCCAATATTTCTTCGTGAATTTTTCCGCATTTCCTATAAACTCCAAAAAATTTCCAGAGAGTTCAAAACTTGACTAGCCATGACTGGTCCTTTTTTGGGATTTACACCTCTATCGAATTTTTCATGTCGTTAGATTTTATGGCAGATGAGCGTTTGCAAACAAAAGATAAGGTGAGAATTCGTAACGAAAACGAAATAACCCGAGGATTTTTTCAGAAAATTCTTATAAGCAGTTTCTGCGTCAAAGCATCGTTATTTGCCAGTGCTATGAGAGCAGTGAAGGAGAAGCGAGATAAGCTGATGACTGTTGACGGGAAGGATGTTTATCCGGATGAAATTATGAAGTAAGTTTATTTTATTCGTTTTATTTTTTTTTGGGTATTTTTTTTTATACTTACTGTTGCATGATAACCTATAAAAATCAAATAAAAATAATTTTTAGTTAAAACGGGAGAAGTGAAAACTGAATATTAGTGTTAGTGGTTGGCAGAATTTAATTAAAAAATCATTCAGATCAGAGTCGCATGCCGTTAGACCTGTAAAAAACTTGTCCCCATATGTTTAAATATTGAACATTCAACATGGCTGTCGGCTTTTTGATATATTCTGAAAACCAGAAAACCAGAAAAACAGGCCTAAAGTGATCTTTGTTTGTGTTGTTTCGTGTTTCTTTTTTCTTCGCACCAATCTTTTTTTTATCTCATTAAAAACCTTTTTGTATGATCACATTTAGAAGTTATTTTTACCACAGGATCACATTCCTAAACACCTCTCTAATTTTTCTTCCTGGTTTTGCGTCATGCTAAACTTATCAAGAGTTCAGAAAACAA</canonical>
            <polymorphic>TGGATGCCAGGAGAAGTAAACAAATGAAAACACAGTTCACAGATGAGAATTTCTCATTGGTTCAGGTCTTGGAGAATAGAAGAATGAAATTGAAGGCAAGGGTAAGTGAGCAGCGAATTCTTTGTTTAATGTTTTTGATTTTGATCAAATTGAATAACCAGATTTTGCGATCCAATATTTCTTCGTGAATTTTTCCGCATTTCCTATAAACTCCAAAAAATTTCCAGAGAGTTCAAAACTTGACTAGCCATGACTGGTCCTTTTTTGGGATTTACACCTCTATCGAATTTTTCATGTCGTTAGATTTTATGGCAGATGAGCGTTTGCAAACAAAAGATAAGGTGAGAATTCGTAACGAAAACGAAATAACCCGAGGATTTTTTCAGAAAATTCTTATAAGCAGTTTCTGCGTCAAAGCATCGTTATTTGCCAGTGCTATGAGAGCAGTGAAGGAGAAGCGAGATAAGCTGATGACTGTTGACGGGAAGGATGTTTATCCRGATGAAATTATGAAGTAAGTTTATTTTATTCGTTTTATTTTTTTTTGGGTATTTTTTTTTATACTTACTGTTGCATGATAACCTATAAAAATCAAATAAAAATAATTTTTAGTTAAAACGGGAGAAGTGAAAACTGAATATTAGTGTTAGTGGTTGGCAGAATTTAATTAAAAAATCATTCAGATCAGAGTCGCATGCCGTTAGACCTGTAAAAAACTTGTCCCCATATGTTTAAATATTGAACATTCAACATGGCTGTCGGCTTTTTGATATATTCTGAAAACCAGAAAACCAGAAAAACAGGCCTAAAGTGATCTTTGTTTGTGTTGTTTCGTGTTTCTTTTTTCTTCGCACCAATCTTTTTTTTATCTCATTAAAAACCTTTTTGTATGATCACATTTAGAAGTTATTTTTACCACAGGATCACATTCCTAAACACCTCTCTAATTTTTCTTCCTGGTTTTGCGTCATGCTAAACTTATCAAGAGTTCAGAAAACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCCGGA</site>
                <isoschizomers>
                    <enzyme>AccIII</enzyme>
                    <enzyme>BseAI</enzyme>
                    <enzyme>BsiMI</enzyme>
                    <enzyme>Bsp13I</enzyme>
                    <enzyme>BspEI</enzyme>
                    <enzyme>BspMII</enzyme>
                    <enzyme>Kpn2I</enzyme>
                    <enzyme>MroI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTATTTGCCAGTGCTATGAG</pcr_primer_p1>
		<pcr_primer_p2>TAATTAAATTCTGCCAACCACTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTATTTGCCAGTGCTATGAGAGCAGTGAAGGAGAAGCGAGATAAGCTGATGACTGTTGACGGGAAGGATGTTTATCCGGATGAAATTATGAAGTAAGTTTATTTTATTCGTTTTATTTTTTTTTGGGTATTTTTTTTTATACTTACTGTTGCATGATAACCTATAAAAATCAAATAAAAATAATTTTTAGTTAAAACGGGAGAAGTGAAAACTGAATATTAGTGTTAGTGGTTGGCAGAATTTAATTA</canonical_amplicon>
		<polymorphic_amplicon>GTTATTTGCCAGTGCTATGAGAGCAGTGAAGGAGAAGCGAGATAAGCTGATGACTGTTGACGGGAAGGATGTTTATCCRGATGAAATTATGAAGTAAGTTTATTTTATTCGTTTTATTTTTTTTTGGGTATTTTTTTTTATACTTACTGTTGCATGATAACCTATAAAAATCAAATAAAAATAATTTTTAGTTAAAACGGGAGAAGTGAAAACTGAATATTAGTGTTAGTGGTTGGCAGAATTTAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35860</snp_id>
        <super_contig>c010200687.Contig1</super_contig>
        <contig_pos>44177</contig_pos>
        <strand>+</strand>
        <context>CATGATAACC[G/T]ataaaaatca</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTATTTTTTTTTGGGTATTTTTTTTTATACTTACTGTTGCATGATAACC</left_flank>
        <right_flank>ATAAAAATCAAATAAAAATAATTTTTAGTTAAAACGGGAGAAGTGAAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAATTGAAGGCAAGGGTAAGTGAGCAGCGAATTCTTTGTTTAATGTTTTTGATTTTGATCAAATTGAATAACCAGATTTTGCGATCCAATATTTCTTCGTGAATTTTTCCGCATTTCCTATAAACTCCAAAAAATTTCCAGAGAGTTCAAAACTTGACTAGCCATGACTGGTCCTTTTTTGGGATTTACACCTCTATCGAATTTTTCATGTCGTTAGATTTTATGGCAGATGAGCGTTTGCAAACAAAAGATAAGGTGAGAATTCGTAACGAAAACGAAATAACCCGAGGATTTTTTCAGAAAATTCTTATAAGCAGTTTCTGCGTCAAAGCATCGTTATTTGCCAGTGCTATGAGAGCAGTGAAGGAGAAGCGAGATAAGCTGATGACTGTTGACGGGAAGGATGTTTATCCGGATGAAATTATGAAGTAAGTTTATTTTATTCGTTTTATTTTTTTTTGGGTATTTTTTTTTATACTTACTGTTGCATGATAACCTATAAAAATCAAATAAAAATAATTTTTAGTTAAAACGGGAGAAGTGAAAACTGAATATTAGTGTTAGTGGTTGGCAGAATTTAATTAAAAAATCATTCAGATCAGAGTCGCATGCCGTTAGACCTGTAAAAAACTTGTCCCCATATGTTTAAATATTGAACATTCAACATGGCTGTCGGCTTTTTGATATATTCTGAAAACCAGAAAACCAGAAAAACAGGCCTAAAGTGATCTTTGTTTGTGTTGTTTCGTGTTTCTTTTTTCTTCGCACCAATCTTTTTTTTATCTCATTAAAAACCTTTTTGTATGATCACATTTAGAAGTTATTTTTACCACAGGATCACATTCCTAAACACCTCTCTAATTTTTCTTCCTGGTTTTGCGTCATGCTAAACTTATCAAGAGTTCAGAAAACAAAATTTAAGCTCAATGTGATCAGTAAAAACTCTTTCTTTACAGATTCAAACAATTTTCTCTGGAATTCCTGAAACGAATTAGAAG</canonical>
            <polymorphic>TGAAATTGAAGGCAAGGGTAAGTGAGCAGCGAATTCTTTGTTTAATGTTTTTGATTTTGATCAAATTGAATAACCAGATTTTGCGATCCAATATTTCTTCGTGAATTTTTCCGCATTTCCTATAAACTCCAAAAAATTTCCAGAGAGTTCAAAACTTGACTAGCCATGACTGGTCCTTTTTTGGGATTTACACCTCTATCGAATTTTTCATGTCGTTAGATTTTATGGCAGATGAGCGTTTGCAAACAAAAGATAAGGTGAGAATTCGTAACGAAAACGAAATAACCCGAGGATTTTTTCAGAAAATTCTTATAAGCAGTTTCTGCGTCAAAGCATCGTTATTTGCCAGTGCTATGAGAGCAGTGAAGGAGAAGCGAGATAAGCTGATGACTGTTGACGGGAAGGATGTTTATCCGGATGAAATTATGAAGTAAGTTTATTTTATTCGTTTTATTTTTTTTTGGGTATTTTTTTTTATACTTACTGTTGCATGATAACCKATAAAAATCAAATAAAAATAATTTTTAGTTAAAACGGGAGAAGTGAAAACTGAATATTAGTGTTAGTGGTTGGCAGAATTTAATTAAAAAATCATTCAGATCAGAGTCGCATGCCGTTAGACCTGTAAAAAACTTGTCCCCATATGTTTAAATATTGAACATTCAACATGGCTGTCGGCTTTTTGATATATTCTGAAAACCAGAAAACCAGAAAAACAGGCCTAAAGTGATCTTTGTTTGTGTTGTTTCGTGTTTCTTTTTTCTTCGCACCAATCTTTTTTTTATCTCATTAAAAACCTTTTTGTATGATCACATTTAGAAGTTATTTTTACCACAGGATCACATTCCTAAACACCTCTCTAATTTTTCTTCCTGGTTTTGCGTCATGCTAAACTTATCAAGAGTTCAGAAAACAAAATTTAAGCTCAATGTGATCAGTAAAAACTCTTTCTTTACAGATTCAAACAATTTTCTCTGGAATTCCTGAAACGAATTAGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTATTTGCCAGTGCTATGAG</pcr_primer_p1>
		<pcr_primer_p2>TAATTAAATTCTGCCAACCACTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTATTTGCCAGTGCTATGAGAGCAGTGAAGGAGAAGCGAGATAAGCTGATGACTGTTGACGGGAAGGATGTTTATCCGGATGAAATTATGAAGTAAGTTTATTTTATTCGTTTTATTTTTTTTTGGGTATTTTTTTTTATACTTACTGTTGCATGATAACCTATAAAAATCAAATAAAAATAATTTTTAGTTAAAACGGGAGAAGTGAAAACTGAATATTAGTGTTAGTGGTTGGCAGAATTTAATTA</canonical_amplicon>
		<polymorphic_amplicon>GTTATTTGCCAGTGCTATGAGAGCAGTGAAGGAGAAGCGAGATAAGCTGATGACTGTTGACGGGAAGGATGTTTATCCGGATGAAATTATGAAGTAAGTTTATTTTATTCGTTTTATTTTTTTTTGGGTATTTTTTTTTATACTTACTGTTGCATGATAACCKATAAAAATCAAATAAAAATAATTTTTAGTTAAAACGGGAGAAGTGAAAACTGAATATTAGTGTTAGTGGTTGGCAGAATTTAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35861</snp_id>
        <super_contig>c010200687.Contig1</super_contig>
        <contig_pos>45653</contig_pos>
        <strand>+</strand>
        <context>AGTTTTAAAA[G/T]ACATTYGGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGTTAACATTTCTGAAATCAAGATATTCGAACAACTCATAGTTTTAAAA</left_flank>
        <right_flank>ACATTTGGAAGTTCAGAGATTTTTCGAAAATTCAGGATAAAAAAATCGGA</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGATGAAGATGTTTAACATTAATTTGAGCACTTGACTTCATTATGTAATTATAAAAAATTTCAAAATGTATTCTAACAGAAAATATTTCTAATAAATTATACTTTTCAATATTCCTACTAAATCAATTGAATCAAAATAAAATTATAAAAATGCATCACTAGCCTGAAAATTCACGTATCGGATAATTTCTGATTTTTGTGATTTTTTCCGAAAATCTGGAACAAATTTAAAAAACGATCACGAATGTGAAATCTCAGTCGGTTTACGCCCCTTCGGGGCTCAACCTCCTGGCCTCCGGTTACAGTTCTCGTAATCTCATAAACAAATTTCTTAACTTTTCCGGAATATTTTTCTCAAAGTTTTTTTCAAGGCTATATTTGGAAATCTGGAAGTTTGGAAGTTCAGAGTTTCAGAAATTCCTAAAACAGAAATTCAAAAATTTTTTAAGTTAACATTTCTGAAATCAAGATATTCGAACAACTCATAGTTTTAAAATACATTTGGAAGTTCAGAGATTTTTCGAAAATTCAGGATAAAAAAATCGGAAATTGGGAAATTGAGAAAGTCTTTACTTTAATCTCTGCAAAACCTCGAAGGTTCTGAAAATTGAAAATTTTCAAGTTCGACTTCAGTTCATTTCTGAATCTCCCGGATTTCCGGTTTTATGACTCTTCAATTTTTTTCTAATCTTCGAAAAAACTTTATGAATGAAAAAAGCCGTCGAAATTCTAAGTTTCGAAAATTTGGAAACTCAGAACTCAACTTCTGAAATCCTGAATTGCTGAACTCTCAAGTTTTCAACTTTTCTTATTTCTGAACTTTCGGAATTTTAAGTGTCTAAACTTCTGATTTTCTTAAATTGATAATTTCAAAAATTATGAAGTGAAGAAGGTCGGAAGCTAAGAAATTGAGTTCAAACTTAGAGATTTAGATTTGAAATTTCAGTAAACTAAAATTTTCCCATCTCAAATATGAGAGAATAGATTTTCTGAAATT</canonical>
            <polymorphic>AAATGATGAAGATGTTTAACATTAATTTGAGCACTTGACTTCATTATGTAATTATAAAAAATTTCAAAATGTATTCTAACAGAAAATATTTCTAATAAATTATACTTTTCAATATTCCTACTAAATCAATTGAATCAAAATAAAATTATAAAAATGCATCACTAGCCTGAAAATTCACGTATCGGATAATTTCTGATTTTTGTGATTTTTTCCGAAAATCTGGAACAAATTTAAAAAACGATCACGAATGTGAAATCTCAGTCGGTTTACGCCCCTTCGGGGCTCAACCTCCTGGCCTCCGGTTACAGTTCTCGTAATCTCATAAACAAATTTCTTAACTTTTCCGGAATATTTTTCTCAAAGTTTTTTTCAAGGCTATATTTGGAAATCTGGAAGTTTGGAAGTTCAGAGTTTCAGAAATTCCTAAAACAGAAATTCAAAAATTTTTTAAGTTAACATTTCTGAAATCAAGATATTCGAACAACTCATAGTTTTAAAAKACATTTGGAAGTTCAGAGATTTTTCGAAAATTCAGGATAAAAAAATCGGAAATTGGGAAATTGAGAAAGTCTTTACTTTAATCTCTGCAAAACCTCGAAGGTTCTGAAAATTGAAAATTTTCAAGTTCGACTTCAGTTCATTTCTGAATCTCCCGGATTTCCGGTTTTATGACTCTTCAATTTTTTTCTAATCTTCGAAAAAACTTTATGAATGAAAAAAGCCGTCGAAATTCTAAGTTTCGAAAATTTGGAAACTCAGAACTCAACTTCTGAAATCCTGAATTGCTGAACTCTCAAGTTTTCAACTTTTCTTATTTCTGAACTTTCGGAATTTTAAGTGTCTAAACTTCTGATTTTCTTAAATTGATAATTTCAAAAATTATGAAGTGAAGAAGGTCGGAAGCTAAGAAATTGAGTTCAAACTTAGAGATTTAGATTTGAAATTTCAGTAAACTAAAATTTTCCCATCTCAAATATGAGAGAATAGATTTTCTGAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTATAAAAATGCATCACTAGC</pcr_primer_p1>
		<pcr_primer_p2>CTTTCTCAATTTCCCAATTTC</pcr_primer_p2>
		<pcr_amplicon_size>428</pcr_amplicon_size>
		<canonical_amplicon>AAAATTATAAAAATGCATCACTAGCCTGAAAATTCACGTATCGGATAATTTCTGATTTTTGTGATTTTTTCCGAAAATCTGGAACAAATTTAAAAAACGATCACGAATGTGAAATCTCAGTCGGTTTACGCCCCTTCGGGGCTCAACCTCCTGGCCTCCGGTTACAGTTCTCGTAATCTCATAAACAAATTTCTTAACTTTTCCGGAATATTTTTCTCAAAGTTTTTTTCAAGGCTATATTTGGAAATCTGGAAGTTTGGAAGTTCAGAGTTTCAGAAATTCCTAAAACAGAAATTCAAAAATTTTTTAAGTTAACATTTCTGAAATCAAGATATTCGAACAACTCATAGTTTTAAAATACATTTGGAAGTTCAGAGATTTTTCGAAAATTCAGGATAAAAAAATCGGAAATTGGGAAATTGAGAAAG</canonical_amplicon>
		<polymorphic_amplicon>AAAATTATAAAAATGCATCACTAGCCTGAAAATTCACGTATCGGATAATTTCTGATTTTTGTGATTTTTTCCGAAAATCTGGAACAAATTTAAAAAACGATCACGAATGTGAAATCTCAGTCGGTTTACGCCCCTTCGGGGCTCAACCTCCTGGCCTCCGGTTACAGTTCTCGTAATCTCATAAACAAATTTCTTAACTTTTCCGGAATATTTTTCTCAAAGTTTTTTTCAAGGCTATATTTGGAAATCTGGAAGTTTGGAAGTTCAGAGTTTCAGAAATTCCTAAAACAGAAATTCAAAAATTTTTTAAGTTAACATTTCTGAAATCAAGATATTCGAACAACTCATAGTTTTAAAAKACATTTGGAAGTTCAGAGATTTTTCGAAAATTCAGGATAAAAAAATCGGAAATTGGGAAATTGAGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35862</snp_id>
        <super_contig>c010200687.Contig1</super_contig>
        <contig_pos>45659</contig_pos>
        <strand>+</strand>
        <context>AAAAKACATT[C/T]GGAAGTTCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACATTTCTGAAATCAAGATATTCGAACAACTCATAGTTTTAAAATACATT</left_flank>
        <right_flank>GGAAGTTCAGAGATTTTTCGAAAATTCAGGATAAAAAAATCGGAAATTGG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAGATGTTTAACATTAATTTGAGCACTTGACTTCATTATGTAATTATAAAAAATTTCAAAATGTATTCTAACAGAAAATATTTCTAATAAATTATACTTTTCAATATTCCTACTAAATCAATTGAATCAAAATAAAATTATAAAAATGCATCACTAGCCTGAAAATTCACGTATCGGATAATTTCTGATTTTTGTGATTTTTTCCGAAAATCTGGAACAAATTTAAAAAACGATCACGAATGTGAAATCTCAGTCGGTTTACGCCCCTTCGGGGCTCAACCTCCTGGCCTCCGGTTACAGTTCTCGTAATCTCATAAACAAATTTCTTAACTTTTCCGGAATATTTTTCTCAAAGTTTTTTTCAAGGCTATATTTGGAAATCTGGAAGTTTGGAAGTTCAGAGTTTCAGAAATTCCTAAAACAGAAATTCAAAAATTTTTTAAGTTAACATTTCTGAAATCAAGATATTCGAACAACTCATAGTTTTAAAATACATTTGGAAGTTCAGAGATTTTTCGAAAATTCAGGATAAAAAAATCGGAAATTGGGAAATTGAGAAAGTCTTTACTTTAATCTCTGCAAAACCTCGAAGGTTCTGAAAATTGAAAATTTTCAAGTTCGACTTCAGTTCATTTCTGAATCTCCCGGATTTCCGGTTTTATGACTCTTCAATTTTTTTCTAATCTTCGAAAAAACTTTATGAATGAAAAAAGCCGTCGAAATTCTAAGTTTCGAAAATTTGGAAACTCAGAACTCAACTTCTGAAATCCTGAATTGCTGAACTCTCAAGTTTTCAACTTTTCTTATTTCTGAACTTTCGGAATTTTAAGTGTCTAAACTTCTGATTTTCTTAAATTGATAATTTCAAAAATTATGAAGTGAAGAAGGTCGGAAGCTAAGAAATTGAGTTCAAACTTAGAGATTTAGATTTGAAATTTCAGTAAACTAAAATTTTCCCATCTCAAATATGAGAGAATAGATTTTCTGAAATTTCCGAA</canonical>
            <polymorphic>TGAAGATGTTTAACATTAATTTGAGCACTTGACTTCATTATGTAATTATAAAAAATTTCAAAATGTATTCTAACAGAAAATATTTCTAATAAATTATACTTTTCAATATTCCTACTAAATCAATTGAATCAAAATAAAATTATAAAAATGCATCACTAGCCTGAAAATTCACGTATCGGATAATTTCTGATTTTTGTGATTTTTTCCGAAAATCTGGAACAAATTTAAAAAACGATCACGAATGTGAAATCTCAGTCGGTTTACGCCCCTTCGGGGCTCAACCTCCTGGCCTCCGGTTACAGTTCTCGTAATCTCATAAACAAATTTCTTAACTTTTCCGGAATATTTTTCTCAAAGTTTTTTTCAAGGCTATATTTGGAAATCTGGAAGTTTGGAAGTTCAGAGTTTCAGAAATTCCTAAAACAGAAATTCAAAAATTTTTTAAGTTAACATTTCTGAAATCAAGATATTCGAACAACTCATAGTTTTAAAATACATTYGGAAGTTCAGAGATTTTTCGAAAATTCAGGATAAAAAAATCGGAAATTGGGAAATTGAGAAAGTCTTTACTTTAATCTCTGCAAAACCTCGAAGGTTCTGAAAATTGAAAATTTTCAAGTTCGACTTCAGTTCATTTCTGAATCTCCCGGATTTCCGGTTTTATGACTCTTCAATTTTTTTCTAATCTTCGAAAAAACTTTATGAATGAAAAAAGCCGTCGAAATTCTAAGTTTCGAAAATTTGGAAACTCAGAACTCAACTTCTGAAATCCTGAATTGCTGAACTCTCAAGTTTTCAACTTTTCTTATTTCTGAACTTTCGGAATTTTAAGTGTCTAAACTTCTGATTTTCTTAAATTGATAATTTCAAAAATTATGAAGTGAAGAAGGTCGGAAGCTAAGAAATTGAGTTCAAACTTAGAGATTTAGATTTGAAATTTCAGTAAACTAAAATTTTCCCATCTCAAATATGAGAGAATAGATTTTCTGAAATTTCCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTATAAAAATGCATCACTAGC</pcr_primer_p1>
		<pcr_primer_p2>CTTTCTCAATTTCCCAATTTC</pcr_primer_p2>
		<pcr_amplicon_size>428</pcr_amplicon_size>
		<canonical_amplicon>AAAATTATAAAAATGCATCACTAGCCTGAAAATTCACGTATCGGATAATTTCTGATTTTTGTGATTTTTTCCGAAAATCTGGAACAAATTTAAAAAACGATCACGAATGTGAAATCTCAGTCGGTTTACGCCCCTTCGGGGCTCAACCTCCTGGCCTCCGGTTACAGTTCTCGTAATCTCATAAACAAATTTCTTAACTTTTCCGGAATATTTTTCTCAAAGTTTTTTTCAAGGCTATATTTGGAAATCTGGAAGTTTGGAAGTTCAGAGTTTCAGAAATTCCTAAAACAGAAATTCAAAAATTTTTTAAGTTAACATTTCTGAAATCAAGATATTCGAACAACTCATAGTTTTAAAATACATTTGGAAGTTCAGAGATTTTTCGAAAATTCAGGATAAAAAAATCGGAAATTGGGAAATTGAGAAAG</canonical_amplicon>
		<polymorphic_amplicon>AAAATTATAAAAATGCATCACTAGCCTGAAAATTCACGTATCGGATAATTTCTGATTTTTGTGATTTTTTCCGAAAATCTGGAACAAATTTAAAAAACGATCACGAATGTGAAATCTCAGTCGGTTTACGCCCCTTCGGGGCTCAACCTCCTGGCCTCCGGTTACAGTTCTCGTAATCTCATAAACAAATTTCTTAACTTTTCCGGAATATTTTTCTCAAAGTTTTTTTCAAGGCTATATTTGGAAATCTGGAAGTTTGGAAGTTCAGAGTTTCAGAAATTCCTAAAACAGAAATTCAAAAATTTTTTAAGTTAACATTTCTGAAATCAAGATATTCGAACAACTCATAGTTTTAAAATACATTYGGAAGTTCAGAGATTTTTCGAAAATTCAGGATAAAAAAATCGGAAATTGGGAAATTGAGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35863</snp_id>
        <super_contig>c010200687.Contig1</super_contig>
        <contig_pos>45727</contig_pos>
        <strand>+</strand>
        <context>AGAAAGTCTT[A/T]ACTTTAATCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGAAAATTCAGGATAAAAAAATCGGAAATTGGGAAATTGAGAAAGTCTT</left_flank>
        <right_flank>ACTTTAATCTCTGCAAAACCTCGAAGGTTCTGAAAATTGAAAATTTTCAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAACAGAAAATATTTCTAATAAATTATACTTTTCAATATTCCTACTAAATCAATTGAATCAAAATAAAATTATAAAAATGCATCACTAGCCTGAAAATTCACGTATCGGATAATTTCTGATTTTTGTGATTTTTTCCGAAAATCTGGAACAAATTTAAAAAACGATCACGAATGTGAAATCTCAGTCGGTTTACGCCCCTTCGGGGCTCAACCTCCTGGCCTCCGGTTACAGTTCTCGTAATCTCATAAACAAATTTCTTAACTTTTCCGGAATATTTTTCTCAAAGTTTTTTTCAAGGCTATATTTGGAAATCTGGAAGTTTGGAAGTTCAGAGTTTCAGAAATTCCTAAAACAGAAATTCAAAAATTTTTTAAGTTAACATTTCTGAAATCAAGATATTCGAACAACTCATAGTTTTAAAATACATTTGGAAGTTCAGAGATTTTTCGAAAATTCAGGATAAAAAAATCGGAAATTGGGAAATTGAGAAAGTCTTTACTTTAATCTCTGCAAAACCTCGAAGGTTCTGAAAATTGAAAATTTTCAAGTTCGACTTCAGTTCATTTCTGAATCTCCCGGATTTCCGGTTTTATGACTCTTCAATTTTTTTCTAATCTTCGAAAAAACTTTATGAATGAAAAAAGCCGTCGAAATTCTAAGTTTCGAAAATTTGGAAACTCAGAACTCAACTTCTGAAATCCTGAATTGCTGAACTCTCAAGTTTTCAACTTTTCTTATTTCTGAACTTTCGGAATTTTAAGTGTCTAAACTTCTGATTTTCTTAAATTGATAATTTCAAAAATTATGAAGTGAAGAAGGTCGGAAGCTAAGAAATTGAGTTCAAACTTAGAGATTTAGATTTGAAATTTCAGTAAACTAAAATTTTCCCATCTCAAATATGAGAGAATAGATTTTCTGAAATTTCCGAACTTCCCGAACTTCCACTTAACGAGCTGCTGGATTTCCGCATTTCCGCATTTCCGGATTTCCGGGCTTC</canonical>
            <polymorphic>TCTAACAGAAAATATTTCTAATAAATTATACTTTTCAATATTCCTACTAAATCAATTGAATCAAAATAAAATTATAAAAATGCATCACTAGCCTGAAAATTCACGTATCGGATAATTTCTGATTTTTGTGATTTTTTCCGAAAATCTGGAACAAATTTAAAAAACGATCACGAATGTGAAATCTCAGTCGGTTTACGCCCCTTCGGGGCTCAACCTCCTGGCCTCCGGTTACAGTTCTCGTAATCTCATAAACAAATTTCTTAACTTTTCCGGAATATTTTTCTCAAAGTTTTTTTCAAGGCTATATTTGGAAATCTGGAAGTTTGGAAGTTCAGAGTTTCAGAAATTCCTAAAACAGAAATTCAAAAATTTTTTAAGTTAACATTTCTGAAATCAAGATATTCGAACAACTCATAGTTTTAAAATACATTTGGAAGTTCAGAGATTTTTCGAAAATTCAGGATAAAAAAATCGGAAATTGGGAAATTGAGAAAGTCTTWACTTTAATCTCTGCAAAACCTCGAAGGTTCTGAAAATTGAAAATTTTCAAGTTCGACTTCAGTTCATTTCTGAATCTCCCGGATTTCCGGTTTTATGACTCTTCAATTTTTTTCTAATCTTCGAAAAAACTTTATGAATGAAAAAAGCCGTCGAAATTCTAAGTTTCGAAAATTTGGAAACTCAGAACTCAACTTCTGAAATCCTGAATTGCTGAACTCTCAAGTTTTCAACTTTTCTTATTTCTGAACTTTCGGAATTTTAAGTGTCTAAACTTCTGATTTTCTTAAATTGATAATTTCAAAAATTATGAAGTGAAGAAGGTCGGAAGCTAAGAAATTGAGTTCAAACTTAGAGATTTAGATTTGAAATTTCAGTAAACTAAAATTTTCCCATCTCAAATATGAGAGAATAGATTTTCTGAAATTTCCGAACTTCCCGAACTTCCACTTAACGAGCTGCTGGATTTCCGCATTTCCGCATTTCCGGATTTCCGGGCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCGAAAATTCAGGATAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGAGTCATAAAACCGGAAATC</pcr_primer_p2>
		<pcr_amplicon_size>155</pcr_amplicon_size>
		<canonical_amplicon>TTTCGAAAATTCAGGATAAAAAAATCGGAAATTGGGAAATTGAGAAAGTCTTTACTTTAATCTCTGCAAAACCTCGAAGGTTCTGAAAATTGAAAATTTTCAAGTTCGACTTCAGTTCATTTCTGAATCTCCCGGATTTCCGGTTTTATGACTCT</canonical_amplicon>
		<polymorphic_amplicon>TTTCGAAAATTCAGGATAAAAAAATCGGAAATTGGGAAATTGAGAAAGTCTTWACTTTAATCTCTGCAAAACCTCGAAGGTTCTGAAAATTGAAAATTTTCAAGTTCGACTTCAGTTCATTTCTGAATCTCCCGGATTTCCGGTTTTATGACTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35864</snp_id>
        <super_contig>c010200687.Contig1</super_contig>
        <contig_pos>46006</contig_pos>
        <strand>+</strand>
        <context>TAAACTTCTG[A/G]TTTTCTTAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAACTTTTCTTATTTCTGAACTTTCGGAATTTTAAGTGTCTAAACTTCTG</left_flank>
        <right_flank>TTTTCTTAAATTGATAATTTCAAAAATTATGAAGTGAAGAAGGTCGGAAG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTCAAAGTTTTTTTCAAGGCTATATTTGGAAATCTGGAAGTTTGGAAGTTCAGAGTTTCAGAAATTCCTAAAACAGAAATTCAAAAATTTTTTAAGTTAACATTTCTGAAATCAAGATATTCGAACAACTCATAGTTTTAAAATACATTTGGAAGTTCAGAGATTTTTCGAAAATTCAGGATAAAAAAATCGGAAATTGGGAAATTGAGAAAGTCTTTACTTTAATCTCTGCAAAACCTCGAAGGTTCTGAAAATTGAAAATTTTCAAGTTCGACTTCAGTTCATTTCTGAATCTCCCGGATTTCCGGTTTTATGACTCTTCAATTTTTTTCTAATCTTCGAAAAAACTTTATGAATGAAAAAAGCCGTCGAAATTCTAAGTTTCGAAAATTTGGAAACTCAGAACTCAACTTCTGAAATCCTGAATTGCTGAACTCTCAAGTTTTCAACTTTTCTTATTTCTGAACTTTCGGAATTTTAAGTGTCTAAACTTCTGATTTTCTTAAATTGATAATTTCAAAAATTATGAAGTGAAGAAGGTCGGAAGCTAAGAAATTGAGTTCAAACTTAGAGATTTAGATTTGAAATTTCAGTAAACTAAAATTTTCCCATCTCAAATATGAGAGAATAGATTTTCTGAAATTTCCGAACTTCCCGAACTTCCACTTAACGAGCTGCTGGATTTCCGCATTTCCGCATTTCCGGATTTCCGGGCTTCTGACTTTTTCTCCAAACCCAGGAAATTGTAAGTTTGAAAGTTTTCGAACTAACAATCCCATAAAACTAACTTGAAAATCTAGTAATCCTGAGACTCAGAAATTTAGTAAATCGAAAATTTGGAAATTTTCAAGTTCGGATTTTTAGGATCTCAGTAATTGGGAAATTGAAAACATCAAAATTCCAGAGTCCAACGAAGAGTTAGAAAATTATTTTTTCCTAAATTCAAAATAACACGGTTTTTTCTGAAAACGCATACTTAATCTTAAAAACATGTTTG</canonical>
            <polymorphic>TTTCTCAAAGTTTTTTTCAAGGCTATATTTGGAAATCTGGAAGTTTGGAAGTTCAGAGTTTCAGAAATTCCTAAAACAGAAATTCAAAAATTTTTTAAGTTAACATTTCTGAAATCAAGATATTCGAACAACTCATAGTTTTAAAATACATTTGGAAGTTCAGAGATTTTTCGAAAATTCAGGATAAAAAAATCGGAAATTGGGAAATTGAGAAAGTCTTTACTTTAATCTCTGCAAAACCTCGAAGGTTCTGAAAATTGAAAATTTTCAAGTTCGACTTCAGTTCATTTCTGAATCTCCCGGATTTCCGGTTTTATGACTCTTCAATTTTTTTCTAATCTTCGAAAAAACTTTATGAATGAAAAAAGCCGTCGAAATTCTAAGTTTCGAAAATTTGGAAACTCAGAACTCAACTTCTGAAATCCTGAATTGCTGAACTCTCAAGTTTTCAACTTTTCTTATTTCTGAACTTTCGGAATTTTAAGTGTCTAAACTTCTGRTTTTCTTAAATTGATAATTTCAAAAATTATGAAGTGAAGAAGGTCGGAAGCTAAGAAATTGAGTTCAAACTTAGAGATTTAGATTTGAAATTTCAGTAAACTAAAATTTTCCCATCTCAAATATGAGAGAATAGATTTTCTGAAATTTCCGAACTTCCCGAACTTCCACTTAACGAGCTGCTGGATTTCCGCATTTCCGCATTTCCGGATTTCCGGGCTTCTGACTTTTTCTCCAAACCCAGGAAATTGTAAGTTTGAAAGTTTTCGAACTAACAATCCCATAAAACTAACTTGAAAATCTAGTAATCCTGAGACTCAGAAATTTAGTAAATCGAAAATTTGGAAATTTTCAAGTTCGGATTTTTAGGATCTCAGTAATTGGGAAATTGAAAACATCAAAATTCCAGAGTCCAACGAAGAGTTAGAAAATTATTTTTTCCTAAATTCAAAATAACACGGTTTTTTCTGAAAACGCATACTTAATCTTAAAAACATGTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>113 109 96 95 72 57 55 52 48 48 47 40 40 33 33 23 13 9 9 8</canonical_bands>
                <polymorphic_bands>113 109 96 95 72 71 57 55 52 48 47 40 40 33 33 13 9 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGTTTTATGACTCTTCAATTT</pcr_primer_p1>
		<pcr_primer_p2>TTCTTAGCTTCCGACCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGGTTTTATGACTCTTCAATTTTTTTCTAATCTTCGAAAAAACTTTATGAATGAAAAAAGCCGTCGAAATTCTAAGTTTCGAAAATTTGGAAACTCAGAACTCAACTTCTGAAATCCTGAATTGCTGAACTCTCAAGTTTTCAACTTTTCTTATTTCTGAACTTTCGGAATTTTAAGTGTCTAAACTTCTGATTTTCTTAAATTGATAATTTCAAAAATTATGAAGTGAAGAAGGTCGGAAGCTAAGAA</canonical_amplicon>
		<polymorphic_amplicon>CGGTTTTATGACTCTTCAATTTTTTTCTAATCTTCGAAAAAACTTTATGAATGAAAAAAGCCGTCGAAATTCTAAGTTTCGAAAATTTGGAAACTCAGAACTCAACTTCTGAAATCCTGAATTGCTGAACTCTCAAGTTTTCAACTTTTCTTATTTCTGAACTTTCGGAATTTTAAGTGTCTAAACTTCTGRTTTTCTTAAATTGATAATTTCAAAAATTATGAAGTGAAGAAGGTCGGAAGCTAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35865</snp_id>
        <super_contig>c010200687.Contig1</super_contig>
        <contig_pos>46186</contig_pos>
        <strand>+</strand>
        <context>TTAACGAGCT[G/T]CTGGATTTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATAGATTTTCTGAAATTTCCGAACTTCCCGAACTTCCACTTAACGAGCT</left_flank>
        <right_flank>CTGGATTTCCGCATTTCCGCATTTCCGGATTTCCGGGCTTCTGACTTTTT</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGATAAAAAAATCGGAAATTGGGAAATTGAGAAAGTCTTTACTTTAATCTCTGCAAAACCTCGAAGGTTCTGAAAATTGAAAATTTTCAAGTTCGACTTCAGTTCATTTCTGAATCTCCCGGATTTCCGGTTTTATGACTCTTCAATTTTTTTCTAATCTTCGAAAAAACTTTATGAATGAAAAAAGCCGTCGAAATTCTAAGTTTCGAAAATTTGGAAACTCAGAACTCAACTTCTGAAATCCTGAATTGCTGAACTCTCAAGTTTTCAACTTTTCTTATTTCTGAACTTTCGGAATTTTAAGTGTCTAAACTTCTGATTTTCTTAAATTGATAATTTCAAAAATTATGAAGTGAAGAAGGTCGGAAGCTAAGAAATTGAGTTCAAACTTAGAGATTTAGATTTGAAATTTCAGTAAACTAAAATTTTCCCATCTCAAATATGAGAGAATAGATTTTCTGAAATTTCCGAACTTCCCGAACTTCCACTTAACGAGCTGCTGGATTTCCGCATTTCCGCATTTCCGGATTTCCGGGCTTCTGACTTTTTCTCCAAACCCAGGAAATTGTAAGTTTGAAAGTTTTCGAACTAACAATCCCATAAAACTAACTTGAAAATCTAGTAATCCTGAGACTCAGAAATTTAGTAAATCGAAAATTTGGAAATTTTCAAGTTCGGATTTTTAGGATCTCAGTAATTGGGAAATTGAAAACATCAAAATTCCAGAGTCCAACGAAGAGTTAGAAAATTATTTTTTCCTAAATTCAAAATAACACGGTTTTTTCTGAAAACGCATACTTAATCTTAAAAACATGTTTGCTCATTCTTAGAAATTTGAAAAAAAAACTTCTGGGTAAATGGTGACTCGGAAAAATCTGAATAAGTTTGCAATTTCACTAAATTTTTCTATCAATCTGAAACGAATATATATGTGATAAAATATTGAAATGCCTTTTACCGAAGTGTTCAAACCGATGAAAAAATCTATCGCACACATTC</canonical>
            <polymorphic>AGGATAAAAAAATCGGAAATTGGGAAATTGAGAAAGTCTTTACTTTAATCTCTGCAAAACCTCGAAGGTTCTGAAAATTGAAAATTTTCAAGTTCGACTTCAGTTCATTTCTGAATCTCCCGGATTTCCGGTTTTATGACTCTTCAATTTTTTTCTAATCTTCGAAAAAACTTTATGAATGAAAAAAGCCGTCGAAATTCTAAGTTTCGAAAATTTGGAAACTCAGAACTCAACTTCTGAAATCCTGAATTGCTGAACTCTCAAGTTTTCAACTTTTCTTATTTCTGAACTTTCGGAATTTTAAGTGTCTAAACTTCTGATTTTCTTAAATTGATAATTTCAAAAATTATGAAGTGAAGAAGGTCGGAAGCTAAGAAATTGAGTTCAAACTTAGAGATTTAGATTTGAAATTTCAGTAAACTAAAATTTTCCCATCTCAAATATGAGAGAATAGATTTTCTGAAATTTCCGAACTTCCCGAACTTCCACTTAACGAGCTKCTGGATTTCCGCATTTCCGCATTTCCGGATTTCCGGGCTTCTGACTTTTTCTCCAAACCCAGGAAATTGTAAGTTTGAAAGTTTTCGAACTAACAATCCCATAAAACTAACTTGAAAATCTAGTAATCCTGAGACTCAGAAATTTAGTAAATCGAAAATTTGGAAATTTTCAAGTTCGGATTTTTAGGATCTCAGTAATTGGGAAATTGAAAACATCAAAATTCCAGAGTCCAACGAAGAGTTAGAAAATTATTTTTTCCTAAATTCAAAATAACACGGTTTTTTCTGAAAACGCATACTTAATCTTAAAAACATGTTTGCTCATTCTTAGAAATTTGAAAAAAAAACTTCTGGGTAAATGGTGACTCGGAAAAATCTGAATAAGTTTGCAATTTCACTAAATTTTTCTATCAATCTGAAACGAATATATATGTGATAAAATATTGAAATGCCTTTTACCGAAGTGTTCAAACCGATGAAAAAATCTATCGCACACATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTAAAATTTTCCCATCTCAAAT</pcr_primer_p1>
		<pcr_primer_p2>AATTTCCAAATTTTCGATTTACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTAAAATTTTCCCATCTCAAATATGAGAGAATAGATTTTCTGAAATTTCCGAACTTCCCGAACTTCCACTTAACGAGCTGCTGGATTTCCGCATTTCCGCATTTCCGGATTTCCGGGCTTCTGACTTTTTCTCCAAACCCAGGAAATTGTAAGTTTGAAAGTTTTCGAACTAACAATCCCATAAAACTAACTTGAAAATCTAGTAATCCTGAGACTCAGAAATTTAGTAAATCGAAAATTTGGAAATT</canonical_amplicon>
		<polymorphic_amplicon>ACTAAAATTTTCCCATCTCAAATATGAGAGAATAGATTTTCTGAAATTTCCGAACTTCCCGAACTTCCACTTAACGAGCTKCTGGATTTCCGCATTTCCGCATTTCCGGATTTCCGGGCTTCTGACTTTTTCTCCAAACCCAGGAAATTGTAAGTTTGAAAGTTTTCGAACTAACAATCCCATAAAACTAACTTGAAAATCTAGTAATCCTGAGACTCAGAAATTTAGTAAATCGAAAATTTGGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35866</snp_id>
        <super_contig>c010200687.Contig1</super_contig>
        <contig_pos>46223</contig_pos>
        <strand>+</strand>
        <context>GGATTTCCGG[A/G]CTTCTGACTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACTTAACGAGCTGCTGGATTTCCGCATTTCCGCATTTCCGGATTTCCGG</left_flank>
        <right_flank>CTTCTGACTTTTTCTCCAAACCCAGGAAATTGTAAGTTTGAAAGTTTTCG</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTACTTTAATCTCTGCAAAACCTCGAAGGTTCTGAAAATTGAAAATTTTCAAGTTCGACTTCAGTTCATTTCTGAATCTCCCGGATTTCCGGTTTTATGACTCTTCAATTTTTTTCTAATCTTCGAAAAAACTTTATGAATGAAAAAAGCCGTCGAAATTCTAAGTTTCGAAAATTTGGAAACTCAGAACTCAACTTCTGAAATCCTGAATTGCTGAACTCTCAAGTTTTCAACTTTTCTTATTTCTGAACTTTCGGAATTTTAAGTGTCTAAACTTCTGATTTTCTTAAATTGATAATTTCAAAAATTATGAAGTGAAGAAGGTCGGAAGCTAAGAAATTGAGTTCAAACTTAGAGATTTAGATTTGAAATTTCAGTAAACTAAAATTTTCCCATCTCAAATATGAGAGAATAGATTTTCTGAAATTTCCGAACTTCCCGAACTTCCACTTAACGAGCTGCTGGATTTCCGCATTTCCGCATTTCCGGATTTCCGGGCTTCTGACTTTTTCTCCAAACCCAGGAAATTGTAAGTTTGAAAGTTTTCGAACTAACAATCCCATAAAACTAACTTGAAAATCTAGTAATCCTGAGACTCAGAAATTTAGTAAATCGAAAATTTGGAAATTTTCAAGTTCGGATTTTTAGGATCTCAGTAATTGGGAAATTGAAAACATCAAAATTCCAGAGTCCAACGAAGAGTTAGAAAATTATTTTTTCCTAAATTCAAAATAACACGGTTTTTTCTGAAAACGCATACTTAATCTTAAAAACATGTTTGCTCATTCTTAGAAATTTGAAAAAAAAACTTCTGGGTAAATGGTGACTCGGAAAAATCTGAATAAGTTTGCAATTTCACTAAATTTTTCTATCAATCTGAAACGAATATATATGTGATAAAATATTGAAATGCCTTTTACCGAAGTGTTCAAACCGATGAAAAAATCTATCGCACACATTCTCTTTCACTTCTTCCCTTTGTTCAAACAACCAAAAAG</canonical>
            <polymorphic>CTTTACTTTAATCTCTGCAAAACCTCGAAGGTTCTGAAAATTGAAAATTTTCAAGTTCGACTTCAGTTCATTTCTGAATCTCCCGGATTTCCGGTTTTATGACTCTTCAATTTTTTTCTAATCTTCGAAAAAACTTTATGAATGAAAAAAGCCGTCGAAATTCTAAGTTTCGAAAATTTGGAAACTCAGAACTCAACTTCTGAAATCCTGAATTGCTGAACTCTCAAGTTTTCAACTTTTCTTATTTCTGAACTTTCGGAATTTTAAGTGTCTAAACTTCTGATTTTCTTAAATTGATAATTTCAAAAATTATGAAGTGAAGAAGGTCGGAAGCTAAGAAATTGAGTTCAAACTTAGAGATTTAGATTTGAAATTTCAGTAAACTAAAATTTTCCCATCTCAAATATGAGAGAATAGATTTTCTGAAATTTCCGAACTTCCCGAACTTCCACTTAACGAGCTGCTGGATTTCCGCATTTCCGCATTTCCGGATTTCCGGRCTTCTGACTTTTTCTCCAAACCCAGGAAATTGTAAGTTTGAAAGTTTTCGAACTAACAATCCCATAAAACTAACTTGAAAATCTAGTAATCCTGAGACTCAGAAATTTAGTAAATCGAAAATTTGGAAATTTTCAAGTTCGGATTTTTAGGATCTCAGTAATTGGGAAATTGAAAACATCAAAATTCCAGAGTCCAACGAAGAGTTAGAAAATTATTTTTTCCTAAATTCAAAATAACACGGTTTTTTCTGAAAACGCATACTTAATCTTAAAAACATGTTTGCTCATTCTTAGAAATTTGAAAAAAAAACTTCTGGGTAAATGGTGACTCGGAAAAATCTGAATAAGTTTGCAATTTCACTAAATTTTTCTATCAATCTGAAACGAATATATATGTGATAAAATATTGAAATGCCTTTTACCGAAGTGTTCAAACCGATGAAAAAATCTATCGCACACATTCTCTTTCACTTCTTCCCTTTGTTCAAACAACCAAAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 414 83</canonical_bands>
                <polymorphic_bands>917 83</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>477 414 83 26</canonical_bands>
                <polymorphic_bands>477 440 83</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>500 182 151 127 40</canonical_bands>
                <polymorphic_bands>540 182 151 127</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTAAAATTTTCCCATCTCAAAT</pcr_primer_p1>
		<pcr_primer_p2>AATTTCCAAATTTTCGATTTACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTAAAATTTTCCCATCTCAAATATGAGAGAATAGATTTTCTGAAATTTCCGAACTTCCCGAACTTCCACTTAACGAGCTGCTGGATTTCCGCATTTCCGCATTTCCGGATTTCCGGGCTTCTGACTTTTTCTCCAAACCCAGGAAATTGTAAGTTTGAAAGTTTTCGAACTAACAATCCCATAAAACTAACTTGAAAATCTAGTAATCCTGAGACTCAGAAATTTAGTAAATCGAAAATTTGGAAATT</canonical_amplicon>
		<polymorphic_amplicon>ACTAAAATTTTCCCATCTCAAATATGAGAGAATAGATTTTCTGAAATTTCCGAACTTCCCGAACTTCCACTTAACGAGCTGCTGGATTTCCGCATTTCCGCATTTCCGGATTTCCGGRCTTCTGACTTTTTCTCCAAACCCAGGAAATTGTAAGTTTGAAAGTTTTCGAACTAACAATCCCATAAAACTAACTTGAAAATCTAGTAATCCTGAGACTCAGAAATTTAGTAAATCGAAAATTTGGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35867</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>30149</contig_pos>
        <strand>+</strand>
        <context>CAACAACAGT[A/T]TTCACTTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGTCAGTAGTTTCTACAACTGCCGTTCCAACTTCCATTCCAACAACAGT</left_flank>
        <right_flank>TTCACTTCTTCATCAGCTGCTTCGACCATAACTTTCACAGATAGTTCAAG</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATGACTCTTGCACTGCAATTATTTTCACTAATGCCAATGCAACTGTTGGACCATTAGACTTGACCATTTACGTCACTTACGTTGAAGATCAATCGATCGATGCATCTCGTTATGCTATTGTAGAGGGAGTTCCATTCTATCCTGCTTTTCATATTGAATCCAGTTCTGAAGCATCTACAACTTTGAATTCCATTTCTGCTTCGTTTGACATTGATTGGAGAGTGACTCCTCAAAACCGTAGCCCAGCGACATTCGAATGGATATCAAATGTTCGTTCAAATCAAAAATTGACTAAAATTTGAGAGATAATCAAACTCATATTTATAGAAAACGATGCAATGTGATGCATCTCAAACATACTCTTTATATTTGCACATTACTGTTGGTGACACTAATGTACAACGTGCTGTCCGTGTGGCATGTGTCCCTGCACCTATCGCAACAACAGTGTCAGTAGTTTCTACAACTGCCGTTCCAACTTCCATTCCAACAACAGTTTTCACTTCTTCATCAGCTGCTTCGACCATAACTTTCACAGATAGTTCAAGTAGTACCAGCTCAAGCGTCACACCTAGTAGTAAGTCGAACCAGAGCACTTTTTGGGAGTAAGTTTGATAAAGAAGTATTCATTCTAGCATGCCCTTACACCCAAAACTACGCAACTTTCTTGTTCGCCTATGCCGCTGATTTCAACCCAACAACTTACGGAATGGTTAGTCGAACGATTGGAAACTTGGTCAAGAAAAACTTTCCTAATAATCAAACATTGGCTAACAAACTTATCGACTTGGAACAACCGCAAAACATCAAATATACAAATAACATAGTGTAAGTGTTGTGATACTTATGCGAAAGATAAAATAATTATTTTAGAAATTTCACGACCAACTGCGACGTTGACATACCGAATGCCACTCTTACAGCTACAGATATTAAGGCATCTGATGCACTGGATGCTATTAAGGTTACATTCTCTATCGATTGCATATTTTTACGTT</canonical>
            <polymorphic>TAATGACTCTTGCACTGCAATTATTTTCACTAATGCCAATGCAACTGTTGGACCATTAGACTTGACCATTTACGTCACTTACGTTGAAGATCAATCGATCGATGCATCTCGTTATGCTATTGTAGAGGGAGTTCCATTCTATCCTGCTTTTCATATTGAATCCAGTTCTGAAGCATCTACAACTTTGAATTCCATTTCTGCTTCGTTTGACATTGATTGGAGAGTGACTCCTCAAAACCGTAGCCCAGCGACATTCGAATGGATATCAAATGTTCGTTCAAATCAAAAATTGACTAAAATTTGAGAGATAATCAAACTCATATTTATAGAAAACGATGCAATGTGATGCATCTCAAACATACTCTTTATATTTGCACATTACTGTTGGTGACACTAATGTACAACGTGCTGTCCGTGTGGCATGTGTCCCTGCACCTATCGCAACAACAGTGTCAGTAGTTTCTACAACTGCCGTTCCAACTTCCATTCCAACAACAGTWTTCACTTCTTCATCAGCTGCTTCGACCATAACTTTCACAGATAGTTCAAGTAGTACCAGCTCAAGCGTCACACCTAGTAGTAAGTCGAACCAGAGCACTTTTTGGGAGTAAGTTTGATAAAGAAGTATTCATTCTAGCATGCCCTTACACCCAAAACTACGCAACTTTCTTGTTCGCCTATGCCGCTGATTTCAACCCAACAACTTACGGAATGGTTAGTCGAACGATTGGAAACTTGGTCAAGAAAAACTTTCCTAATAATCAAACATTGGCTAACAAACTTATCGACTTGGAACAACCGCAAAACATCAAATATACAAATAACATAGTGTAAGTGTTGTGATACTTATGCGAAAGATAAAATAATTATTTTAGAAATTTCACGACCAACTGCGACGTTGACATACCGAATGCCACTCTTACAGCTACAGATATTAAGGCATCTGATGCACTGGATGCTATTAAGGTTACATTCTCTATCGATTGCATATTTTTACGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGATGCATCTCAAACATACTCT</pcr_primer_p1>
		<pcr_primer_p2>GGTTCGACTTACTACTAGGTGTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTGATGCATCTCAAACATACTCTTTATATTTGCACATTACTGTTGGTGACACTAATGTACAACGTGCTGTCCGTGTGGCATGTGTCCCTGCACCTATCGCAACAACAGTGTCAGTAGTTTCTACAACTGCCGTTCCAACTTCCATTCCAACAACAGTTTTCACTTCTTCATCAGCTGCTTCGACCATAACTTTCACAGATAGTTCAAGTAGTACCAGCTCAAGCGTCACACCTAGTAGTAAGTCGAACC</canonical_amplicon>
		<polymorphic_amplicon>GTGATGCATCTCAAACATACTCTTTATATTTGCACATTACTGTTGGTGACACTAATGTACAACGTGCTGTCCGTGTGGCATGTGTCCCTGCACCTATCGCAACAACAGTGTCAGTAGTTTCTACAACTGCCGTTCCAACTTCCATTCCAACAACAGTWTTCACTTCTTCATCAGCTGCTTCGACCATAACTTTCACAGATAGTTCAAGTAGTACCAGCTCAAGCGTCACACCTAGTAGTAAGTCGAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35868</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>30456</contig_pos>
        <strand>+</strand>
        <context>AACCGCAAAA[A/C]ATCAAATATA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATAATCAAACATTGGCTAACAAACTTATCGACTTGGAACAACCGCAAAA</left_flank>
        <right_flank>ATCAAATATACAAATAACATAGTGTAAGTGTTGTGATACTTATGCGAAAG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAATCAAACTCATATTTATAGAAAACGATGCAATGTGATGCATCTCAAACATACTCTTTATATTTGCACATTACTGTTGGTGACACTAATGTACAACGTGCTGTCCGTGTGGCATGTGTCCCTGCACCTATCGCAACAACAGTGTCAGTAGTTTCTACAACTGCCGTTCCAACTTCCATTCCAACAACAGTTTTCACTTCTTCATCAGCTGCTTCGACCATAACTTTCACAGATAGTTCAAGTAGTACCAGCTCAAGCGTCACACCTAGTAGTAAGTCGAACCAGAGCACTTTTTGGGAGTAAGTTTGATAAAGAAGTATTCATTCTAGCATGCCCTTACACCCAAAACTACGCAACTTTCTTGTTCGCCTATGCCGCTGATTTCAACCCAACAACTTACGGAATGGTTAGTCGAACGATTGGAAACTTGGTCAAGAAAAACTTTCCTAATAATCAAACATTGGCTAACAAACTTATCGACTTGGAACAACCGCAAAACATCAAATATACAAATAACATAGTGTAAGTGTTGTGATACTTATGCGAAAGATAAAATAATTATTTTAGAAATTTCACGACCAACTGCGACGTTGACATACCGAATGCCACTCTTACAGCTACAGATATTAAGGCATCTGATGCACTGGATGCTATTAAGGTTACATTCTCTATCGATTGCATATTTTTACGTTGTTAATTTCAGAGCTTCTTGAATGATCATCACTCGGGACGGTTAGAAGGATCTGTAGTGTTTATTTTGTTGAATCGTTTGCCTAAAGATTTGTCTTCAGCGGATAATGATCTCAGTCCTGAAGACTATGATAAGTTAACCAATTTGAATATCAAGGTAATCGTCAGTTACACGTCACTTTTAAACATTCTTTCTACTCAGGTCTTCCCAATCATCTCAATTAGCAGTCTTGCTAAAGGAGCTTTAGCAGGAAGAAGTGGAGCTGTTTTCAATAAAATCGCTGCCCAAACCAACGGACATTATGTTAT</canonical>
            <polymorphic>ATAATCAAACTCATATTTATAGAAAACGATGCAATGTGATGCATCTCAAACATACTCTTTATATTTGCACATTACTGTTGGTGACACTAATGTACAACGTGCTGTCCGTGTGGCATGTGTCCCTGCACCTATCGCAACAACAGTGTCAGTAGTTTCTACAACTGCCGTTCCAACTTCCATTCCAACAACAGTTTTCACTTCTTCATCAGCTGCTTCGACCATAACTTTCACAGATAGTTCAAGTAGTACCAGCTCAAGCGTCACACCTAGTAGTAAGTCGAACCAGAGCACTTTTTGGGAGTAAGTTTGATAAAGAAGTATTCATTCTAGCATGCCCTTACACCCAAAACTACGCAACTTTCTTGTTCGCCTATGCCGCTGATTTCAACCCAACAACTTACGGAATGGTTAGTCGAACGATTGGAAACTTGGTCAAGAAAAACTTTCCTAATAATCAAACATTGGCTAACAAACTTATCGACTTGGAACAACCGCAAAAMATCAAATATACAAATAACATAGTGTAAGTGTTGTGATACTTATGCGAAAGATAAAATAATTATTTTAGAAATTTCACGACCAACTGCGACGTTGACATACCGAATGCCACTCTTACAGCTACAGATATTAAGGCATCTGATGCACTGGATGCTATTAAGGTTACATTCTCTATCGATTGCATATTTTTACGTTGTTAATTTCAGAGCTTCTTGAATGATCATCACTCGGGACGGTTAGAAGGATCTGTAGTGTTTATTTTGTTGAATCGTTTGCCTAAAGATTTGTCTTCAGCGGATAATGATCTCAGTCCTGAAGACTATGATAAGTTAACCAATTTGAATATCAAGGTAATCGTCAGTTACACGTCACTTTTAAACATTCTTTCTACTCAGGTCTTCCCAATCATCTCAATTAGCAGTCTTGCTAAAGGAGCTTTAGCAGGAAGAAGTGGAGCTGTTTTCAATAAAATCGCTGCCCAAACCAACGGACATTATGTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAACTTACGGAATGGTTAGTC</pcr_primer_p1>
		<pcr_primer_p2>TCAGATGCCTTAATATCTGTAGC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACAACTTACGGAATGGTTAGTCGAACGATTGGAAACTTGGTCAAGAAAAACTTTCCTAATAATCAAACATTGGCTAACAAACTTATCGACTTGGAACAACCGCAAAACATCAAATATACAAATAACATAGTGTAAGTGTTGTGATACTTATGCGAAAGATAAAATAATTATTTTAGAAATTTCACGACCAACTGCGACGTTGACATACCGAATGCCACTCTTACAGCTACAGATATTAAGGCATCTGA</canonical_amplicon>
		<polymorphic_amplicon>ACAACTTACGGAATGGTTAGTCGAACGATTGGAAACTTGGTCAAGAAAAACTTTCCTAATAATCAAACATTGGCTAACAAACTTATCGACTTGGAACAACCGCAAAAMATCAAATATACAAATAACATAGTGTAAGTGTTGTGATACTTATGCGAAAGATAAAATAATTATTTTAGAAATTTCACGACCAACTGCGACGTTGACATACCGAATGCCACTCTTACAGCTACAGATATTAAGGCATCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35869</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>30842</contig_pos>
        <strand>+</strand>
        <context>AACATTCTTT[C/T]TACTCAGGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGAATATCAAGGTAATCGTCAGTTACACGTCACTTTTAAACATTCTTT</left_flank>
        <right_flank>TACTCAGGTCTTCCCAATCATCTCAATTAGCAGTCTTGCTAAAGGAGCTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCCAACAACTTACGGAATGGTTAGTCGAACGATTGGAAACTTGGTCAAGAAAAACTTTCCTAATAATCAAACATTGGCTAACAAACTTATCGACTTGGAACAACCGCAAAACATCAAATATACAAATAACATAGTGTAAGTGTTGTGATACTTATGCGAAAGATAAAATAATTATTTTAGAAATTTCACGACCAACTGCGACGTTGACATACCGAATGCCACTCTTACAGCTACAGATATTAAGGCATCTGATGCACTGGATGCTATTAAGGTTACATTCTCTATCGATTGCATATTTTTACGTTGTTAATTTCAGAGCTTCTTGAATGATCATCACTCGGGACGGTTAGAAGGATCTGTAGTGTTTATTTTGTTGAATCGTTTGCCTAAAGATTTGTCTTCAGCGGATAATGATCTCAGTCCTGAAGACTATGATAAGTTAACCAATTTGAATATCAAGGTAATCGTCAGTTACACGTCACTTTTAAACATTCTTTCTACTCAGGTCTTCCCAATCATCTCAATTAGCAGTCTTGCTAAAGGAGCTTTAGCAGGAAGAAGTGGAGCTGTTTTCAATAAAATCGCTGCCCAAACCAACGGACATTATGTTATAGCAGATGATTCGATCGGACCAGACACAAATTCAGATTACAACAAAATTGTATCTAACTTCATGAATACTGCTTACAATCAGAATTTGCTATTCACTAGGAATATGGGAGTGAATAGAATTGGAACGAATTTGGGTGTTGTAAAAATCCCGAAATCAGCTACTGACTCACCAAATATTACTGTCACTATTACAGTATCATTGTCTGCAGTAGATGGTATTAAAGTTATAAATTGAAGGATTATATTTCCTGTTTCCAGCACATCAGCCACAACCTCCGTCTAAGCTTGTATTGGGAATAAAACCAAACCCGAACTTTACCAATACCAAAGGCATCCTCATTGACTTCAACACCACACTACCTAATCAATTTGTAGGTACTCACCCA</canonical>
            <polymorphic>AACCCAACAACTTACGGAATGGTTAGTCGAACGATTGGAAACTTGGTCAAGAAAAACTTTCCTAATAATCAAACATTGGCTAACAAACTTATCGACTTGGAACAACCGCAAAACATCAAATATACAAATAACATAGTGTAAGTGTTGTGATACTTATGCGAAAGATAAAATAATTATTTTAGAAATTTCACGACCAACTGCGACGTTGACATACCGAATGCCACTCTTACAGCTACAGATATTAAGGCATCTGATGCACTGGATGCTATTAAGGTTACATTCTCTATCGATTGCATATTTTTACGTTGTTAATTTCAGAGCTTCTTGAATGATCATCACTCGGGACGGTTAGAAGGATCTGTAGTGTTTATTTTGTTGAATCGTTTGCCTAAAGATTTGTCTTCAGCGGATAATGATCTCAGTCCTGAAGACTATGATAAGTTAACCAATTTGAATATCAAGGTAATCGTCAGTTACACGTCACTTTTAAACATTCTTTYTACTCAGGTCTTCCCAATCATCTCAATTAGCAGTCTTGCTAAAGGAGCTTTAGCAGGAAGAAGTGGAGCTGTTTTCAATAAAATCGCTGCCCAAACCAACGGACATTATGTTATAGCAGATGATTCGATCGGACCAGACACAAATTCAGATTACAACAAAATTGTATCTAACTTCATGAATACTGCTTACAATCAGAATTTGCTATTCACTAGGAATATGGGAGTGAATAGAATTGGAACGAATTTGGGTGTTGTAAAAATCCCGAAATCAGCTACTGACTCACCAAATATTACTGTCACTATTACAGTATCATTGTCTGCAGTAGATGGTATTAAAGTTATAAATTGAAGGATTATATTTCCTGTTTCCAGCACATCAGCCACAACCTCCGTCTAAGCTTGTATTGGGAATAAAACCAAACCCGAACTTTACCAATACCAAAGGCATCCTCATTGACTTCAACACCACACTACCTAATCAATTTGTAGGTACTCACCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCAGTCCTGAAGACTATGATAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTTGTAATCTGAATTTGTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TCTCAGTCCTGAAGACTATGATAAGTTAACCAATTTGAATATCAAGGTAATCGTCAGTTACACGTCACTTTTAAACATTCTTTCTACTCAGGTCTTCCCAATCATCTCAATTAGCAGTCTTGCTAAAGGAGCTTTAGCAGGAAGAAGTGGAGCTGTTTTCAATAAAATCGCTGCCCAAACCAACGGACATTATGTTATAGCAGATGATTCGATCGGACCAGACACAAATTCAGATTACAACAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTCAGTCCTGAAGACTATGATAAGTTAACCAATTTGAATATCAAGGTAATCGTCAGTTACACGTCACTTTTAAACATTCTTTYTACTCAGGTCTTCCCAATCATCTCAATTAGCAGTCTTGCTAAAGGAGCTTTAGCAGGAAGAAGTGGAGCTGTTTTCAATAAAATCGCTGCCCAAACCAACGGACATTATGTTATAGCAGATGATTCGATCGGACCAGACACAAATTCAGATTACAACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35870</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>31243</contig_pos>
        <strand>+</strand>
        <context>CGTCTAAGCT[G/T]GTATTGGGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGATTATATTTCCTGTTTCCAGCACATCAGCCACAACCTCCGTCTAAGCT</left_flank>
        <right_flank>GTATTGGGAATAAAACCAAACCCGAACTTTACCAATACCAAAGGCATCCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAGCGGATAATGATCTCAGTCCTGAAGACTATGATAAGTTAACCAATTTGAATATCAAGGTAATCGTCAGTTACACGTCACTTTTAAACATTCTTTCTACTCAGGTCTTCCCAATCATCTCAATTAGCAGTCTTGCTAAAGGAGCTTTAGCAGGAAGAAGTGGAGCTGTTTTCAATAAAATCGCTGCCCAAACCAACGGACATTATGTTATAGCAGATGATTCGATCGGACCAGACACAAATTCAGATTACAACAAAATTGTATCTAACTTCATGAATACTGCTTACAATCAGAATTTGCTATTCACTAGGAATATGGGAGTGAATAGAATTGGAACGAATTTGGGTGTTGTAAAAATCCCGAAATCAGCTACTGACTCACCAAATATTACTGTCACTATTACAGTATCATTGTCTGCAGTAGATGGTATTAAAGTTATAAATTGAAGGATTATATTTCCTGTTTCCAGCACATCAGCCACAACCTCCGTCTAAGCTTGTATTGGGAATAAAACCAAACCCGAACTTTACCAATACCAAAGGCATCCTCATTGACTTCAACACCACACTACCTAATCAATTTGTAGGTACTCACCCAGAATAGGCTGTCGATGTTACTTTTCAGAGCAACTCCAACTACTATACTACAACTATTGAATTGGAAGCTGGAATAGAGAGAGAGTTGTTTTTGCAGTACGTTGCGGGTTCCGACAATAATGATTTGCTAATTCGTATGTGGGCAGCGGGGTAAGTTTATTCTTAATATATGGCCCATAACATTAACAACTTCTCTATCTATCAGAGACGCGTTCCGTGAAGCAACTTACATGAATTATAACGAGAATGCTGAACTACACTTTACAAATAATTCGACAATTAACGAGGATTTCGGGGCAGCTTTACAATTCCAATTCAGTGGTGCATGTTCTCATGATAAAACGGTTTGGTACCTGTTTTATTTCTATATTTTGTCAATGTTTTGCTTTCAGGCCACTCTTC</canonical>
            <polymorphic>TTCAGCGGATAATGATCTCAGTCCTGAAGACTATGATAAGTTAACCAATTTGAATATCAAGGTAATCGTCAGTTACACGTCACTTTTAAACATTCTTTCTACTCAGGTCTTCCCAATCATCTCAATTAGCAGTCTTGCTAAAGGAGCTTTAGCAGGAAGAAGTGGAGCTGTTTTCAATAAAATCGCTGCCCAAACCAACGGACATTATGTTATAGCAGATGATTCGATCGGACCAGACACAAATTCAGATTACAACAAAATTGTATCTAACTTCATGAATACTGCTTACAATCAGAATTTGCTATTCACTAGGAATATGGGAGTGAATAGAATTGGAACGAATTTGGGTGTTGTAAAAATCCCGAAATCAGCTACTGACTCACCAAATATTACTGTCACTATTACAGTATCATTGTCTGCAGTAGATGGTATTAAAGTTATAAATTGAAGGATTATATTTCCTGTTTCCAGCACATCAGCCACAACCTCCGTCTAAGCTKGTATTGGGAATAAAACCAAACCCGAACTTTACCAATACCAAAGGCATCCTCATTGACTTCAACACCACACTACCTAATCAATTTGTAGGTACTCACCCAGAATAGGCTGTCGATGTTACTTTTCAGAGCAACTCCAACTACTATACTACAACTATTGAATTGGAAGCTGGAATAGAGAGAGAGTTGTTTTTGCAGTACGTTGCGGGTTCCGACAATAATGATTTGCTAATTCGTATGTGGGCAGCGGGGTAAGTTTATTCTTAATATATGGCCCATAACATTAACAACTTCTCTATCTATCAGAGACGCGTTCCGTGAAGCAACTTACATGAATTATAACGAGAATGCTGAACTACACTTTACAAATAATTCGACAATTAACGAGGATTTCGGGGCAGCTTTACAATTCCAATTCAGTGGTGCATGTTCTCATGATAAAACGGTTTGGTACCTGTTTTATTTCTATATTTTGTCAATGTTTTGCTTTCAGGCCACTCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGACTCACCAAATATTACTGTCA</pcr_primer_p1>
		<pcr_primer_p2>AAAAGTAACATCGACAGCCTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGACTCACCAAATATTACTGTCACTATTACAGTATCATTGTCTGCAGTAGATGGTATTAAAGTTATAAATTGAAGGATTATATTTCCTGTTTCCAGCACATCAGCCACAACCTCCGTCTAAGCTTGTATTGGGAATAAAACCAAACCCGAACTTTACCAATACCAAAGGCATCCTCATTGACTTCAACACCACACTACCTAATCAATTTGTAGGTACTCACCCAGAATAGGCTGTCGATGTTACTTTT</canonical_amplicon>
		<polymorphic_amplicon>TGACTCACCAAATATTACTGTCACTATTACAGTATCATTGTCTGCAGTAGATGGTATTAAAGTTATAAATTGAAGGATTATATTTCCTGTTTCCAGCACATCAGCCACAACCTCCGTCTAAGCTKGTATTGGGAATAAAACCAAACCCGAACTTTACCAATACCAAAGGCATCCTCATTGACTTCAACACCACACTACCTAATCAATTTGTAGGTACTCACCCAGAATAGGCTGTCGATGTTACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35871</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>31286</contig_pos>
        <strand>+</strand>
        <context>CAATACCAAA[A/G]GCATCCTCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAAGCTTGTATTGGGAATAAAACCAAACCCGAACTTTACCAATACCAAA</left_flank>
        <right_flank>GCATCCTCATTGACTTCAACACCACACTACCTAATCAATTTGTAGGTACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAATTTGAATATCAAGGTAATCGTCAGTTACACGTCACTTTTAAACATTCTTTCTACTCAGGTCTTCCCAATCATCTCAATTAGCAGTCTTGCTAAAGGAGCTTTAGCAGGAAGAAGTGGAGCTGTTTTCAATAAAATCGCTGCCCAAACCAACGGACATTATGTTATAGCAGATGATTCGATCGGACCAGACACAAATTCAGATTACAACAAAATTGTATCTAACTTCATGAATACTGCTTACAATCAGAATTTGCTATTCACTAGGAATATGGGAGTGAATAGAATTGGAACGAATTTGGGTGTTGTAAAAATCCCGAAATCAGCTACTGACTCACCAAATATTACTGTCACTATTACAGTATCATTGTCTGCAGTAGATGGTATTAAAGTTATAAATTGAAGGATTATATTTCCTGTTTCCAGCACATCAGCCACAACCTCCGTCTAAGCTTGTATTGGGAATAAAACCAAACCCGAACTTTACCAATACCAAAGGCATCCTCATTGACTTCAACACCACACTACCTAATCAATTTGTAGGTACTCACCCAGAATAGGCTGTCGATGTTACTTTTCAGAGCAACTCCAACTACTATACTACAACTATTGAATTGGAAGCTGGAATAGAGAGAGAGTTGTTTTTGCAGTACGTTGCGGGTTCCGACAATAATGATTTGCTAATTCGTATGTGGGCAGCGGGGTAAGTTTATTCTTAATATATGGCCCATAACATTAACAACTTCTCTATCTATCAGAGACGCGTTCCGTGAAGCAACTTACATGAATTATAACGAGAATGCTGAACTACACTTTACAAATAATTCGACAATTAACGAGGATTTCGGGGCAGCTTTACAATTCCAATTCAGTGGTGCATGTTCTCATGATAAAACGGTTTGGTACCTGTTTTATTTCTATATTTTGTCAATGTTTTGCTTTCAGGCCACTCTTCTCATAACGGATTGTAATGGAGTCGTTAGTGCAAAATACGATTC</canonical>
            <polymorphic>ACCAATTTGAATATCAAGGTAATCGTCAGTTACACGTCACTTTTAAACATTCTTTCTACTCAGGTCTTCCCAATCATCTCAATTAGCAGTCTTGCTAAAGGAGCTTTAGCAGGAAGAAGTGGAGCTGTTTTCAATAAAATCGCTGCCCAAACCAACGGACATTATGTTATAGCAGATGATTCGATCGGACCAGACACAAATTCAGATTACAACAAAATTGTATCTAACTTCATGAATACTGCTTACAATCAGAATTTGCTATTCACTAGGAATATGGGAGTGAATAGAATTGGAACGAATTTGGGTGTTGTAAAAATCCCGAAATCAGCTACTGACTCACCAAATATTACTGTCACTATTACAGTATCATTGTCTGCAGTAGATGGTATTAAAGTTATAAATTGAAGGATTATATTTCCTGTTTCCAGCACATCAGCCACAACCTCCGTCTAAGCTTGTATTGGGAATAAAACCAAACCCGAACTTTACCAATACCAAARGCATCCTCATTGACTTCAACACCACACTACCTAATCAATTTGTAGGTACTCACCCAGAATAGGCTGTCGATGTTACTTTTCAGAGCAACTCCAACTACTATACTACAACTATTGAATTGGAAGCTGGAATAGAGAGAGAGTTGTTTTTGCAGTACGTTGCGGGTTCCGACAATAATGATTTGCTAATTCGTATGTGGGCAGCGGGGTAAGTTTATTCTTAATATATGGCCCATAACATTAACAACTTCTCTATCTATCAGAGACGCGTTCCGTGAAGCAACTTACATGAATTATAACGAGAATGCTGAACTACACTTTACAAATAATTCGACAATTAACGAGGATTTCGGGGCAGCTTTACAATTCCAATTCAGTGGTGCATGTTCTCATGATAAAACGGTTTGGTACCTGTTTTATTTCTATATTTTGTCAATGTTTTGCTTTCAGGCCACTCTTCTCATAACGGATTGTAATGGAGTCGTTAGTGCAAAATACGATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACTCACCAAATATTACTGTCA</pcr_primer_p1>
		<pcr_primer_p2>AAAAGTAACATCGACAGCCTAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGACTCACCAAATATTACTGTCACTATTACAGTATCATTGTCTGCAGTAGATGGTATTAAAGTTATAAATTGAAGGATTATATTTCCTGTTTCCAGCACATCAGCCACAACCTCCGTCTAAGCTTGTATTGGGAATAAAACCAAACCCGAACTTTACCAATACCAAAGGCATCCTCATTGACTTCAACACCACACTACCTAATCAATTTGTAGGTACTCACCCAGAATAGGCTGTCGATGTTACTTTT</canonical_amplicon>
		<polymorphic_amplicon>TGACTCACCAAATATTACTGTCACTATTACAGTATCATTGTCTGCAGTAGATGGTATTAAAGTTATAAATTGAAGGATTATATTTCCTGTTTCCAGCACATCAGCCACAACCTCCGTCTAAGCTTGTATTGGGAATAAAACCAAACCCGAACTTTACCAATACCAAARGCATCCTCATTGACTTCAACACCACACTACCTAATCAATTTGTAGGTACTCACCCAGAATAGGCTGTCGATGTTACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35872</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>31420</contig_pos>
        <strand>+</strand>
        <context>CTGGAATAGA[G/T]AGAGAGTTGK</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGCAACTCCAACTACTATACTACAACTATTGAATTGGAAGCTGGAATAGA</left_flank>
        <right_flank>AGAGAGTTGTTTTTGCAGTACGTTGCGGGTTCCGACAATAATGATTTGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAATCGCTGCCCAAACCAACGGACATTATGTTATAGCAGATGATTCGATCGGACCAGACACAAATTCAGATTACAACAAAATTGTATCTAACTTCATGAATACTGCTTACAATCAGAATTTGCTATTCACTAGGAATATGGGAGTGAATAGAATTGGAACGAATTTGGGTGTTGTAAAAATCCCGAAATCAGCTACTGACTCACCAAATATTACTGTCACTATTACAGTATCATTGTCTGCAGTAGATGGTATTAAAGTTATAAATTGAAGGATTATATTTCCTGTTTCCAGCACATCAGCCACAACCTCCGTCTAAGCTTGTATTGGGAATAAAACCAAACCCGAACTTTACCAATACCAAAGGCATCCTCATTGACTTCAACACCACACTACCTAATCAATTTGTAGGTACTCACCCAGAATAGGCTGTCGATGTTACTTTTCAGAGCAACTCCAACTACTATACTACAACTATTGAATTGGAAGCTGGAATAGAGAGAGAGTTGTTTTTGCAGTACGTTGCGGGTTCCGACAATAATGATTTGCTAATTCGTATGTGGGCAGCGGGGTAAGTTTATTCTTAATATATGGCCCATAACATTAACAACTTCTCTATCTATCAGAGACGCGTTCCGTGAAGCAACTTACATGAATTATAACGAGAATGCTGAACTACACTTTACAAATAATTCGACAATTAACGAGGATTTCGGGGCAGCTTTACAATTCCAATTCAGTGGTGCATGTTCTCATGATAAAACGGTTTGGTACCTGTTTTATTTCTATATTTTGTCAATGTTTTGCTTTCAGGCCACTCTTCTCATAACGGATTGTAATGGAGTCGTTAGTGCAAAATACGATTCCGATCAAGTGGCTTCAACAAGTTCCGGATTTTATCAATTCATTCCATTTTTCTGTTCTTCCCAACCTACTCCTGCCACTTGCATTTCGGGAGCAGAGAGCAAGTATGATGCTCAATTTGTTTCTGATAGTTTCT</canonical>
            <polymorphic>TAAAATCGCTGCCCAAACCAACGGACATTATGTTATAGCAGATGATTCGATCGGACCAGACACAAATTCAGATTACAACAAAATTGTATCTAACTTCATGAATACTGCTTACAATCAGAATTTGCTATTCACTAGGAATATGGGAGTGAATAGAATTGGAACGAATTTGGGTGTTGTAAAAATCCCGAAATCAGCTACTGACTCACCAAATATTACTGTCACTATTACAGTATCATTGTCTGCAGTAGATGGTATTAAAGTTATAAATTGAAGGATTATATTTCCTGTTTCCAGCACATCAGCCACAACCTCCGTCTAAGCTTGTATTGGGAATAAAACCAAACCCGAACTTTACCAATACCAAAGGCATCCTCATTGACTTCAACACCACACTACCTAATCAATTTGTAGGTACTCACCCAGAATAGGCTGTCGATGTTACTTTTCAGAGCAACTCCAACTACTATACTACAACTATTGAATTGGAAGCTGGAATAGAKAGAGAGTTGTTTTTGCAGTACGTTGCGGGTTCCGACAATAATGATTTGCTAATTCGTATGTGGGCAGCGGGGTAAGTTTATTCTTAATATATGGCCCATAACATTAACAACTTCTCTATCTATCAGAGACGCGTTCCGTGAAGCAACTTACATGAATTATAACGAGAATGCTGAACTACACTTTACAAATAATTCGACAATTAACGAGGATTTCGGGGCAGCTTTACAATTCCAATTCAGTGGTGCATGTTCTCATGATAAAACGGTTTGGTACCTGTTTTATTTCTATATTTTGTCAATGTTTTGCTTTCAGGCCACTCTTCTCATAACGGATTGTAATGGAGTCGTTAGTGCAAAATACGATTCCGATCAAGTGGCTTCAACAAGTTCCGGATTTTATCAATTCATTCCATTTTTCTGTTCTTCCCAACCTACTCCTGCCACTTGCATTTCGGGAGCAGAGAGCAAGTATGATGCTCAATTTGTTTCTGATAGTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATAGGCTGTCGATGTTACTT</pcr_primer_p1>
		<pcr_primer_p2>AGCATTCTCGTTATAATTCATGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATAGGCTGTCGATGTTACTTTTCAGAGCAACTCCAACTACTATACTACAACTATTGAATTGGAAGCTGGAATAGAGAGAGAGTTGTTTTTGCAGTACGTTGCGGGTTCCGACAATAATGATTTGCTAATTCGTATGTGGGCAGCGGGGTAAGTTTATTCTTAATATATGGCCCATAACATTAACAACTTCTCTATCTATCAGAGACGCGTTCCGTGAAGCAACTTACATGAATTATAACGAGAATGCT</canonical_amplicon>
		<polymorphic_amplicon>GAATAGGCTGTCGATGTTACTTTTCAGAGCAACTCCAACTACTATACTACAACTATTGAATTGGAAGCTGGAATAGAKAGAGAGTTGTTTTTGCAGTACGTTGCGGGTTCCGACAATAATGATTTGCTAATTCGTATGTGGGCAGCGGGGTAAGTTTATTCTTAATATATGGCCCATAACATTAACAACTTCTCTATCTATCAGAGACGCGTTCCGTGAAGCAACTTACATGAATTATAACGAGAATGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35873</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>31430</contig_pos>
        <strand>+</strand>
        <context>KAGAGAGTTG[G/T]TTTTGCAGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTACTATACTACAACTATTGAATTGGAAGCTGGAATAGAGAGAGAGTTG</left_flank>
        <right_flank>TTTTGCAGTACGTTGCGGGTTCCGACAATAATGATTTGCTAATTCGTATG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCCAAACCAACGGACATTATGTTATAGCAGATGATTCGATCGGACCAGACACAAATTCAGATTACAACAAAATTGTATCTAACTTCATGAATACTGCTTACAATCAGAATTTGCTATTCACTAGGAATATGGGAGTGAATAGAATTGGAACGAATTTGGGTGTTGTAAAAATCCCGAAATCAGCTACTGACTCACCAAATATTACTGTCACTATTACAGTATCATTGTCTGCAGTAGATGGTATTAAAGTTATAAATTGAAGGATTATATTTCCTGTTTCCAGCACATCAGCCACAACCTCCGTCTAAGCTTGTATTGGGAATAAAACCAAACCCGAACTTTACCAATACCAAAGGCATCCTCATTGACTTCAACACCACACTACCTAATCAATTTGTAGGTACTCACCCAGAATAGGCTGTCGATGTTACTTTTCAGAGCAACTCCAACTACTATACTACAACTATTGAATTGGAAGCTGGAATAGAGAGAGAGTTGTTTTTGCAGTACGTTGCGGGTTCCGACAATAATGATTTGCTAATTCGTATGTGGGCAGCGGGGTAAGTTTATTCTTAATATATGGCCCATAACATTAACAACTTCTCTATCTATCAGAGACGCGTTCCGTGAAGCAACTTACATGAATTATAACGAGAATGCTGAACTACACTTTACAAATAATTCGACAATTAACGAGGATTTCGGGGCAGCTTTACAATTCCAATTCAGTGGTGCATGTTCTCATGATAAAACGGTTTGGTACCTGTTTTATTTCTATATTTTGTCAATGTTTTGCTTTCAGGCCACTCTTCTCATAACGGATTGTAATGGAGTCGTTAGTGCAAAATACGATTCCGATCAAGTGGCTTCAACAAGTTCCGGATTTTATCAATTCATTCCATTTTTCTGTTCTTCCCAACCTACTCCTGCCACTTGCATTTCGGGAGCAGAGAGCAAGTATGATGCTCAATTTGTTTCTGATAGTTTCTCAATCACTCA</canonical>
            <polymorphic>GCCCAAACCAACGGACATTATGTTATAGCAGATGATTCGATCGGACCAGACACAAATTCAGATTACAACAAAATTGTATCTAACTTCATGAATACTGCTTACAATCAGAATTTGCTATTCACTAGGAATATGGGAGTGAATAGAATTGGAACGAATTTGGGTGTTGTAAAAATCCCGAAATCAGCTACTGACTCACCAAATATTACTGTCACTATTACAGTATCATTGTCTGCAGTAGATGGTATTAAAGTTATAAATTGAAGGATTATATTTCCTGTTTCCAGCACATCAGCCACAACCTCCGTCTAAGCTTGTATTGGGAATAAAACCAAACCCGAACTTTACCAATACCAAAGGCATCCTCATTGACTTCAACACCACACTACCTAATCAATTTGTAGGTACTCACCCAGAATAGGCTGTCGATGTTACTTTTCAGAGCAACTCCAACTACTATACTACAACTATTGAATTGGAAGCTGGAATAGAGAGAGAGTTGKTTTTGCAGTACGTTGCGGGTTCCGACAATAATGATTTGCTAATTCGTATGTGGGCAGCGGGGTAAGTTTATTCTTAATATATGGCCCATAACATTAACAACTTCTCTATCTATCAGAGACGCGTTCCGTGAAGCAACTTACATGAATTATAACGAGAATGCTGAACTACACTTTACAAATAATTCGACAATTAACGAGGATTTCGGGGCAGCTTTACAATTCCAATTCAGTGGTGCATGTTCTCATGATAAAACGGTTTGGTACCTGTTTTATTTCTATATTTTGTCAATGTTTTGCTTTCAGGCCACTCTTCTCATAACGGATTGTAATGGAGTCGTTAGTGCAAAATACGATTCCGATCAAGTGGCTTCAACAAGTTCCGGATTTTATCAATTCATTCCATTTTTCTGTTCTTCCCAACCTACTCCTGCCACTTGCATTTCGGGAGCAGAGAGCAAGTATGATGCTCAATTTGTTTCTGATAGTTTCTCAATCACTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATAGGCTGTCGATGTTACTT</pcr_primer_p1>
		<pcr_primer_p2>AGCATTCTCGTTATAATTCATGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATAGGCTGTCGATGTTACTTTTCAGAGCAACTCCAACTACTATACTACAACTATTGAATTGGAAGCTGGAATAGAGAGAGAGTTGTTTTTGCAGTACGTTGCGGGTTCCGACAATAATGATTTGCTAATTCGTATGTGGGCAGCGGGGTAAGTTTATTCTTAATATATGGCCCATAACATTAACAACTTCTCTATCTATCAGAGACGCGTTCCGTGAAGCAACTTACATGAATTATAACGAGAATGCT</canonical_amplicon>
		<polymorphic_amplicon>GAATAGGCTGTCGATGTTACTTTTCAGAGCAACTCCAACTACTATACTACAACTATTGAATTGGAAGCTGGAATAGAGAGAGAGTTGKTTTTGCAGTACGTTGCGGGTTCCGACAATAATGATTTGCTAATTCGTATGTGGGCAGCGGGGTAAGTTTATTCTTAATATATGGCCCATAACATTAACAACTTCTCTATCTATCAGAGACGCGTTCCGTGAAGCAACTTACATGAATTATAACGAGAATGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35874</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>52745</contig_pos>
        <strand>+</strand>
        <context>GACAAGGTGW[C/T]AAAAAAARAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGT</left_flank>
        <right_flank>AAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACTCATTCGAATGAAAACCTGAATTCAATAAATAATATTATGTATTACGACAATAATAATAATTAGATATGAAGTGTCAACGGAAAGGTGGGGCATGTGTGTGTTAGAAGGACACCTTTCTTATCTCAAAATCTATAGATGAGATTAATGGAGAAGAGGTTGTAAAACGGTAAGATCTTCACTAAATAGCTGAAATCAAATAACGAACGAGGTCAAGCACTTTACTCGTGAGTTTTTAAAAACATGCTTCGCCAAGGAATCTTTTTAAAGACACATATTCAGAAATTGAAACTTTAAGCAGTTGTTACTTTAAAAATCTCCTACAGACACCAAAAGTACATTTCCATTTCTCAGACGACGTAATAGATTTTGCCTATTTCACCGTAATCGTTGAGATACACGAACAGAGAAGAGATGCAGATATTCAGACAGTTTCCTCAATTACCATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTGAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGGCTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCCAAAAAAAAATATATTGAAATGCAATTATATCTGTACACATATATATTTATTTGGGGTAGTAGAAGAATAGAGAGAGTAACAGATGAAACAAGTGGATAATATGCGCATCTAGTACATACAATAATAACATGCCAAAAAAAAAGAAGTCGACTTCTTTTCCCCTCTTACTTGTAACTAACGCATCGAACCGGTAATGCTTATTCTATGGAGGAAATAAGAGACAAACAGAAGTTTTTAGAAAGACGGTAAGATGGATGGAATCATCCAGAATTTTTATTCTGCAAAACTTTCGAAATTTCATATGTCTGCATTCAGAAAATCATTCAAAT</canonical>
            <polymorphic>AAAACTCATTCGAATGAAAACCTGAATTCAATAAATAATATTATGTATTACGACAATAATAATAATTAGATATGAAGTGTCAACGGAAAGGTGGGGCATGTGTGTGTTAGAAGGACACCTTTCTTATCTCAAAATCTATAGATGAGATTAATGGAGAAGAGGTTGTAAAACGGTAAGATCTTCACTAAATAGCTGAAATCAAATAACGAACGAGGTCAAGCACTTTACTCGTGAGTTTTTAAAAACATGCTTCGCCAAGGAATCTTTTTAAAGACACATATTCAGAAATTGAAACTTTAAGCAGTTGTTACTTTAAAAATCTCCTACAGACACCAAAAGTACATTTCCATTTCTCAGACGACGTAATAGATTTTGCCTATTTCACCGTAATCGTTGAGATACACGAACAGAGAAGAGATGCAGATATTCAGACAGTTTCCTCAATTACCATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTYAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGGCTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCCAAAAAAAAATATATTGAAATGCAATTATATCTGTACACATATATATTTATTTGGGGTAGTAGAAGAATAGAGAGAGTAACAGATGAAACAAGTGGATAATATGCGCATCTAGTACATACAATAATAACATGCCAAAAAAAAAGAAGTCGACTTCTTTTCCCCTCTTACTTGTAACTAACGCATCGAACCGGTAATGCTTATTCTATGGAGGAAATAAGAGACAAACAGAAGTTTTTAGAAAGACGGTAAGATGGATGGAATCATCCAGAATTTTTATTCTGCAAAACTTTCGAAATTTCATATGTCTGCATTCAGAAAATCATTCAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>235 95 93 79 77 67 57 56 52 43 38 38 19 14 11 11 9 2 2 2</canonical_bands>
                <polymorphic_bands>235 95 93 79 77 67 57 56 52 43 40 38 19 14 11 11 9 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATATTCAGACAGTTTCCTCAA</pcr_primer_p1>
		<pcr_primer_p2>GGAGTTGGTCTTTTTAACTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGATATTCAGACAGTTTCCTCAATTACCATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTGAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGGCTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCC</canonical_amplicon>
		<polymorphic_amplicon>AGATATTCAGACAGTTTCCTCAATTACCATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTYAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGGCTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35875</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>52917</contig_pos>
        <strand>+</strand>
        <context>GACCAACTCC[A/G]AAAAAAAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCC</left_flank>
        <right_flank>AAAAAAAATATATTGAAATGCAATTATATCTGTACACATATATATTTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAAGATCTTCACTAAATAGCTGAAATCAAATAACGAACGAGGTCAAGCACTTTACTCGTGAGTTTTTAAAAACATGCTTCGCCAAGGAATCTTTTTAAAGACACATATTCAGAAATTGAAACTTTAAGCAGTTGTTACTTTAAAAATCTCCTACAGACACCAAAAGTACATTTCCATTTCTCAGACGACGTAATAGATTTTGCCTATTTCACCGTAATCGTTGAGATACACGAACAGAGAAGAGATGCAGATATTCAGACAGTTTCCTCAATTACCATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTGAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGGCTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCCAAAAAAAAATATATTGAAATGCAATTATATCTGTACACATATATATTTATTTGGGGTAGTAGAAGAATAGAGAGAGTAACAGATGAAACAAGTGGATAATATGCGCATCTAGTACATACAATAATAACATGCCAAAAAAAAAGAAGTCGACTTCTTTTCCCCTCTTACTTGTAACTAACGCATCGAACCGGTAATGCTTATTCTATGGAGGAAATAAGAGACAAACAGAAGTTTTTAGAAAGACGGTAAGATGGATGGAATCATCCAGAATTTTTATTCTGCAAAACTTTCGAAATTTCATATGTCTGCATTCAGAAAATCATTCAAATATCCGACTAGTAAGTCTAGTTCTCATAGTGAGCAGTAAGATAAAAACAATCCTAGTTTTGTTCAGAAGATAATTCAAAAAGAATCCAACACATACAATGGTTGACCATGTAGATAGTTCTTATAATATTTTCAAGTCTATTTCTCCGGGGTATTGAAAATCAAGTTATTACT</canonical>
            <polymorphic>GTAAGATCTTCACTAAATAGCTGAAATCAAATAACGAACGAGGTCAAGCACTTTACTCGTGAGTTTTTAAAAACATGCTTCGCCAAGGAATCTTTTTAAAGACACATATTCAGAAATTGAAACTTTAAGCAGTTGTTACTTTAAAAATCTCCTACAGACACCAAAAGTACATTTCCATTTCTCAGACGACGTAATAGATTTTGCCTATTTCACCGTAATCGTTGAGATACACGAACAGAGAAGAGATGCAGATATTCAGACAGTTTCCTCAATTACCATCAAACTATAATCGTTTTATCGCTTTAGGTTAAGCTTTAGACAAGGTGTGAAAAAAAAATTGAAAAGAAAAAACTGCTTTATTTTTCACGAAAAATATTCCAGTATATTTTGGGAGAACTGTATCCAGAATGCGCAGAAGGATCGGCTACTAAATCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCCRAAAAAAAATATATTGAAATGCAATTATATCTGTACACATATATATTTATTTGGGGTAGTAGAAGAATAGAGAGAGTAACAGATGAAACAAGTGGATAATATGCGCATCTAGTACATACAATAATAACATGCCAAAAAAAAAGAAGTCGACTTCTTTTCCCCTCTTACTTGTAACTAACGCATCGAACCGGTAATGCTTATTCTATGGAGGAAATAAGAGACAAACAGAAGTTTTTAGAAAGACGGTAAGATGGATGGAATCATCCAGAATTTTTATTCTGCAAAACTTTCGAAATTTCATATGTCTGCATTCAGAAAATCATTCAAATATCCGACTAGTAAGTCTAGTTCTCATAGTGAGCAGTAAGATAAAAACAATCCTAGTTTTGTTCAGAAGATAATTCAAAAAGAATCCAACACATACAATGGTTGACCATGTAGATAGTTCTTATAATATTTTCAAGTCTATTTCTCCGGGGTATTGAAAATCAAGTTATTACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTGTTTTCACAACAGTACTACA</pcr_primer_p1>
		<pcr_primer_p2>ATGCGTTAGTTACAAGTAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCCAAAAAAAAATATATTGAAATGCAATTATATCTGTACACATATATATTTATTTGGGGTAGTAGAAGAATAGAGAGAGTAACAGATGAAACAAGTGGATAATATGCGCATCTAGTACATACAATAATAACATGCCAAAAAAAAAGAAGTCGACTTCTTTTCCCCTCTTACTTGTAACTAACGCAT</canonical_amplicon>
		<polymorphic_amplicon>TCTTGTTTTCACAACAGTACTACATAGAAAATATCGTTCGAAACGAAAAGTTAAAAAGACCAACTCCRAAAAAAAATATATTGAAATGCAATTATATCTGTACACATATATATTTATTTGGGGTAGTAGAAGAATAGAGAGAGTAACAGATGAAACAAGTGGATAATATGCGCATCTAGTACATACAATAATAACATGCCAAAAAAAAAGAAGTCGACTTCTTTTCCCCTCTTACTTGTAACTAACGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35876</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>54580</contig_pos>
        <strand></strand>
        <context>ttgagaatcg[A/G]ccatttcaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGTATGTATTTTTGTATCTTTGATAGGACAGTTATAAAGTTGAGAATCG</left_flank>
        <right_flank>CCATTTCAAAAATATGCTTCAACTGAATAAAATTTGTTAAACAAACTACC</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAAATTGAAATTTAGTTTAAAAAAATTACAAAACTAATGAGAAAACTGTAACGTTTGAATCAAAAAGACTAAAATTGAAGAAAATTAAAAAGTACTAGATTGCAAAGAAACTTCAGAGAAAAAATAAGAGTCGGTCGTCACAATGAAAGCGGTGTTTATTGGAAAATGAGAAATGTGGTGAAAACTGCAGTAATCCTTGGTTTTGGCGTACGGTTAATCTTCCGCGCGGAAGGTAACCCCCGCAGAGCAATATGAAAAGTTACCGGTCGTAATCGGTTGACAGAAGGGCAAATACAAATATATGCGCCTTCTCTTACTACTGTTTGTCTGTGAAAGAGCAATTCAGAAACTTTGGTGAGACTGGTAAAAAATGAAATGTCAATTTGAATTTGACAGGTGGCGAACAACTAGTCAAAAAACATCTATACTTCTTACCATGGAAAGTTCCCGGTATGTATTTTTGTATCTTTGATAGGACAGTTATAAAGTTGAGAATCGACCATTTCAAAAATATGCTTCAACTGAATAAAATTTGTTAAACAAACTACCCAGATACGAATTAAAAAATATCAGATTCCTGAAAGTCTAGAATACTAATTGGTGAATGTCGATATAATATAACGTATCGAGAAGCGAGCACATACTATCTTTCTAAAGAAACGCCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTCTGTTATTTTGTTTTCCGATTAAACACAAGAATTAAAAAAAATAGAGGAACTGAACCACAAAGCGGCTTTTCCCGTTTTGGTGTGCTCTTGACCCAACGCAGCGAAAAGTTCCAATTTTGGAGAAGCTTCTGTTTAGATGCGGGATGAGAGAGGGAGAAAGAAAGTGGGAGTATATAAATAAATACTTTTGTGATGAGAAATGTTAGAGAAATAGCAATTGTAAACAATCGACAAAAGAGTGCTCTCTCGAG</canonical>
            <polymorphic>ACAAATTGAAATTTAGTTTAAAAAAATTACAAAACTAATGAGAAAACTGTAACGTTTGAATCAAAAAGACTAAAATTGAAGAAAATTAAAAAGTACTAGATTGCAAAGAAACTTCAGAGAAAAAATAAGAGTCGGTCGTCACAATGAAAGCGGTGTTTATTGGAAAATGAGAAATGTGGTGAAAACTGCAGTAATCCTTGGTTTTGGCGTACGGTTAATCTTCCGCGCGGAAGGTAACCCCCGCAGAGCAATATGAAAAGTTACCGGTCGTAATCGGTTGACAGAAGGGCAAATACAAATATATGCGCCTTCTCTTACTACTGTTTGTCTGTGAAAGAGCAATTCAGAAACTTTGGTGAGACTGGTAAAAAATGAAATGTCAATTTGAATTTGACAGGTGGCGAACAACTAGTCAAAAAACATCTATACTTCTTACCATGGAAAGTTCCCGGTATGTATTTTTGTATCTTTGATAGGACAGTTATAAAGTTGAGAATCGRCCATTTCAAAAATATGCTTCAACTGAATAAAATTTGTTAAACAAACTACCCAGATACGAATTAAAAAATATCAGATTCCTGAAAGTCTAGAATACTAATTGGTGAATGTCGATATAATATAACGTATCGAGAAGCGAGCACATACTATCTTTCTAAAGAAACGCCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTCTGTTATTTTGTTTTCCGATTAAACACAAGAATTAAAAAAAATAGAGGAACTGAACCACAAAGCGGCTTTTCCCGTTTTGGTGTGCTCTTGACCCAACGCAGCGAAAAGTTCCAATTTTGGAGAAGCTTCTGTTTAGATGCGGGATGAGAGAGGGAGAAAGAAAGTGGGAGTATATAAATAAATACTTTTGTGATGAGAAATGTTAGAGAAATAGCAATTGTAAACAATCGACAAAAGAGTGCTCTCTCGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 350 112 19 18 3</canonical_bands>
                <polymorphic_bands>610 350 19 18 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTACTGTTTGTCTGTGAAAGAGC</pcr_primer_p1>
		<pcr_primer_p2>TAATTCGTATCTGGGTAGTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTACTGTTTGTCTGTGAAAGAGCAATTCAGAAACTTTGGTGAGACTGGTAAAAAATGAAATGTCAATTTGAATTTGACAGGTGGCGAACAACTAGTCAAAAAACATCTATACTTCTTACCATGGAAAGTTCCCGGTATGTATTTTTGTATCTTTGATAGGACAGTTATAAAGTTGAGAATCGACCATTTCAAAAATATGCTTCAACTGAATAAAATTTGTTAAACAAACTACCCAGATACGAATTA</canonical_amplicon>
		<polymorphic_amplicon>CTACTGTTTGTCTGTGAAAGAGCAATTCAGAAACTTTGGTGAGACTGGTAAAAAATGAAATGTCAATTTGAATTTGACAGGTGGCGAACAACTAGTCAAAAAACATCTATACTTCTTACCATGGAAAGTTCCCGGTATGTATTTTTGTATCTTTGATAGGACAGTTATAAAGTTGAGAATCGRCCATTTCAAAAATATGCTTCAACTGAATAAAATTTGTTAAACAAACTACCCAGATACGAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35877</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>54863</contig_pos>
        <strand>+</strand>
        <context>CACAAGAATT[C/T]AAAAAAAYAG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTTCTACAGTTCTCTGTTATTTTGTTTTCCGATTAAACACAAGAATT</left_flank>
        <right_flank>AAAAAAATAGAGGAACTGAACCACAAAGCGGCTTTTCCCGTTTTGGTGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGGGCAAATACAAATATATGCGCCTTCTCTTACTACTGTTTGTCTGTGAAAGAGCAATTCAGAAACTTTGGTGAGACTGGTAAAAAATGAAATGTCAATTTGAATTTGACAGGTGGCGAACAACTAGTCAAAAAACATCTATACTTCTTACCATGGAAAGTTCCCGGTATGTATTTTTGTATCTTTGATAGGACAGTTATAAAGTTGAGAATCGACCATTTCAAAAATATGCTTCAACTGAATAAAATTTGTTAAACAAACTACCCAGATACGAATTAAAAAATATCAGATTCCTGAAAGTCTAGAATACTAATTGGTGAATGTCGATATAATATAACGTATCGAGAAGCGAGCACATACTATCTTTCTAAAGAAACGCCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTCTGTTATTTTGTTTTCCGATTAAACACAAGAATTAAAAAAAATAGAGGAACTGAACCACAAAGCGGCTTTTCCCGTTTTGGTGTGCTCTTGACCCAACGCAGCGAAAAGTTCCAATTTTGGAGAAGCTTCTGTTTAGATGCGGGATGAGAGAGGGAGAAAGAAAGTGGGAGTATATAAATAAATACTTTTGTGATGAGAAATGTTAGAGAAATAGCAATTGTAAACAATCGACAAAAGAGTGCTCTCTCGAGAATTCATTTGATATCAAAACAATCAGTAAGTGATACCTTCTGAATTTATACGGTCTTTCTATAGTTCACAAACAAAAGTCAACAGAAGTTTGAATGTTGAAAACCAGTCCCGGAAAACTTCGTAAACTCATCCAGACAGTGAGAAAGTTTCTGAACCTCAAATCGGTATGACCTAGATTTGACCCAAATTACATAATCACGAATTTATCTTCTTTGAAATGAAAGTAACTTCAAAACGCAAAGAAAATAGAAAAATTAAATATGACACAAAAATACACTTTCA</canonical>
            <polymorphic>GAAGGGCAAATACAAATATATGCGCCTTCTCTTACTACTGTTTGTCTGTGAAAGAGCAATTCAGAAACTTTGGTGAGACTGGTAAAAAATGAAATGTCAATTTGAATTTGACAGGTGGCGAACAACTAGTCAAAAAACATCTATACTTCTTACCATGGAAAGTTCCCGGTATGTATTTTTGTATCTTTGATAGGACAGTTATAAAGTTGAGAATCGACCATTTCAAAAATATGCTTCAACTGAATAAAATTTGTTAAACAAACTACCCAGATACGAATTAAAAAATATCAGATTCCTGAAAGTCTAGAATACTAATTGGTGAATGTCGATATAATATAACGTATCGAGAAGCGAGCACATACTATCTTTCTAAAGAAACGCCTGGCAGTCTCTACAAAAAAAGCCTGAAACCGGCTAGACAGCTGAGCAACAGAGCGCAGTGACTCTGCATTTTTCTACAGTTCTCTGTTATTTTGTTTTCCGATTAAACACAAGAATTYAAAAAAATAGAGGAACTGAACCACAAAGCGGCTTTTCCCGTTTTGGTGTGCTCTTGACCCAACGCAGCGAAAAGTTCCAATTTTGGAGAAGCTTCTGTTTAGATGCGGGATGAGAGAGGGAGAAAGAAAGTGGGAGTATATAAATAAATACTTTTGTGATGAGAAATGTTAGAGAAATAGCAATTGTAAACAATCGACAAAAGAGTGCTCTCTCGAGAATTCATTTGATATCAAAACAATCAGTAAGTGATACCTTCTGAATTTATACGGTCTTTCTATAGTTCACAAACAAAAGTCAACAGAAGTTTGAATGTTGAAAACCAGTCCCGGAAAACTTCGTAAACTCATCCAGACAGTGAGAAAGTTTCTGAACCTCAAATCGGTATGACCTAGATTTGACCCAAATTACATAATCACGAATTTATCTTCTTTGAAATGAAAGTAACTTCAAAACGCAAAGAAAATAGAAAAATTAAATATGACACAAAAATACACTTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>475 254 207 27 24 13</canonical_bands>
                <polymorphic_bands>488 254 207 27 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCATTTTTCTACAGTTCTCTGTT</pcr_primer_p1>
		<pcr_primer_p2>CGATTGTTTACAATTGCTATTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCATTTTTCTACAGTTCTCTGTTATTTTGTTTTCCGATTAAACACAAGAATTAAAAAAAATAGAGGAACTGAACCACAAAGCGGCTTTTCCCGTTTTGGTGTGCTCTTGACCCAACGCAGCGAAAAGTTCCAATTTTGGAGAAGCTTCTGTTTAGATGCGGGATGAGAGAGGGAGAAAGAAAGTGGGAGTATATAAATAAATACTTTTGTGATGAGAAATGTTAGAGAAATAGCAATTGTAAACAATCG</canonical_amplicon>
		<polymorphic_amplicon>GCATTTTTCTACAGTTCTCTGTTATTTTGTTTTCCGATTAAACACAAGAATTYAAAAAAATAGAGGAACTGAACCACAAAGCGGCTTTTCCCGTTTTGGTGTGCTCTTGACCCAACGCAGCGAAAAGTTCCAATTTTGGAGAAGCTTCTGTTTAGATGCGGGATGAGAGAGGGAGAAAGAAAGTGGGAGTATATAAATAAATACTTTTGTGATGAGAAATGTTAGAGAAATAGCAATTGTAAACAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35878</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>128282</contig_pos>
        <strand>+</strand>
        <context>ATTTTCAAAG[A/G]GGTTATGGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACCAGCTATTCCAGAACATTTGAAATCGTCTATTGTTAGATTTTCAAAG</left_flank>
        <right_flank>GGTTATGGTTGCAAAAAGTGAATACGGCCTCATGGAAAATAGTTTTGCAG</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGAGGAGTACTTATAATTGAAGAATTCGTACAGAAAGAATGTGACACCAAAACGAGGAACAAGTTTCTCAGGGAACAATGACCGAAAGTGTCTAAAAACAAAATGATGATAAAATCTTTGTGCCCTTTTATACAAACAGTTGTTGCTGCTGTCCTCGTGGCAAACCAGGTCAGTGGGAGGAGCCAATTGTTTGTACAAGCAATGTTCGGAGCAACACTACAGAAGTTATATCCAGATGTTCAGAAGGAGCAAAAAAGGGGAGAAACCCCGTAAAGTTGTTGTGTGTATGTTTTGAATTGACCAGAAGAGGGAGAGGACGTACCGAACTCGCCTATTGTGTTGTGGTGAGTGATAAGATTAAAAGAGGAGTGATAAGACCAGCGAAAGTTCAAAAATATAATATAGTGAGCTAGAGAGCAAAGTGATATGTAGCCCTAAGATTTTATAAAACCAGCTATTCCAGAACATTTGAAATCGTCTATTGTTAGATTTTCAAAGGGGTTATGGTTGCAAAAAGTGAATACGGCCTCATGGAAAATAGTTTTGCAGCACAACGTGGAAGTGAAAAGGCTGATACAGTACTCTGGAAGAATAAAAAAGACAACTGCAAAACTTTTTATTTATTTGTGATTGCATATTCTGATATTTTCAGAACGATCGGAGGTACCATCTAATGGACGATATGATTCTAATCCCAGAGGACCTAATATATTTCAAAATATCAAACAAAAAAAAAGGAAAATTATCAGAGAAAATATTAAAATAACCTACAGAGAGCCTCAACTCCTGTAGACTAAACCACCCGGCCCTAGTTCCTAGAAACTGATAACGGAAACTGCTGAATCTGTGCATTTTCTCCTCTCTCTTATGATACATGATATCTATTTTTGATCAGAAAGTGTGAACCCGAAGGCTAGTGCACACTGAACTTGCTCTTGTTCTCTTTCTTGCCCATCTCATCAATTTTCTCGTTATCAAACCATGATTTTTTGTCAATTT</canonical>
            <polymorphic>ACGAGGAGTACTTATAATTGAAGAATTCGTACAGAAAGAATGTGACACCAAAACGAGGAACAAGTTTCTCAGGGAACAATGACCGAAAGTGTCTAAAAACAAAATGATGATAAAATCTTTGTGCCCTTTTATACAAACAGTTGTTGCTGCTGTCCTCGTGGCAAACCAGGTCAGTGGGAGGAGCCAATTGTTTGTACAAGCAATGTTCGGAGCAACACTACAGAAGTTATATCCAGATGTTCAGAAGGAGCAAAAAAGGGGAGAAACCCCGTAAAGTTGTTGTGTGTATGTTTTGAATTGACCAGAAGAGGGAGAGGACGTACCGAACTCGCCTATTGTGTTGTGGTGAGTGATAAGATTAAAAGAGGAGTGATAAGACCAGCGAAAGTTCAAAAATATAATATAGTGAGCTAGAGAGCAAAGTGATATGTAGCCCTAAGATTTTATAAAACCAGCTATTCCAGAACATTTGAAATCGTCTATTGTTAGATTTTCAAAGRGGTTATGGTTGCAAAAAGTGAATACGGCCTCATGGAAAATAGTTTTGCAGCACAACGTGGAAGTGAAAAGGCTGATACAGTACTCTGGAAGAATAAAAAAGACAACTGCAAAACTTTTTATTTATTTGTGATTGCATATTCTGATATTTTCAGAACGATCGGAGGTACCATCTAATGGACGATATGATTCTAATCCCAGAGGACCTAATATATTTCAAAATATCAAACAAAAAAAAAGGAAAATTATCAGAGAAAATATTAAAATAACCTACAGAGAGCCTCAACTCCTGTAGACTAAACCACCCGGCCCTAGTTCCTAGAAACTGATAACGGAAACTGCTGAATCTGTGCATTTTCTCCTCTCTCTTATGATACATGATATCTATTTTTGATCAGAAAGTGTGAACCCGAAGGCTAGTGCACACTGAACTTGCTCTTGTTCTCTTTCTTGCCCATCTCATCAATTTTCTCGTTATCAAACCATGATTTTTTGTCAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTTGTGGTGAGTGATAAGATT</pcr_primer_p1>
		<pcr_primer_p2>CAGAGTACTGTATCAGCCTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGTTGTGGTGAGTGATAAGATTAAAAGAGGAGTGATAAGACCAGCGAAAGTTCAAAAATATAATATAGTGAGCTAGAGAGCAAAGTGATATGTAGCCCTAAGATTTTATAAAACCAGCTATTCCAGAACATTTGAAATCGTCTATTGTTAGATTTTCAAAGGGGTTATGGTTGCAAAAAGTGAATACGGCCTCATGGAAAATAGTTTTGCAGCACAACGTGGAAGTGAAAAGGCTGATACAGTACTCTG</canonical_amplicon>
		<polymorphic_amplicon>GTGTTGTGGTGAGTGATAAGATTAAAAGAGGAGTGATAAGACCAGCGAAAGTTCAAAAATATAATATAGTGAGCTAGAGAGCAAAGTGATATGTAGCCCTAAGATTTTATAAAACCAGCTATTCCAGAACATTTGAAATCGTCTATTGTTAGATTTTCAAAGRGGTTATGGTTGCAAAAAGTGAATACGGCCTCATGGAAAATAGTTTTGCAGCACAACGTGGAAGTGAAAAGGCTGATACAGTACTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35879</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>128399</contig_pos>
        <strand>+</strand>
        <context>TGCAAAACTT[G/T]TTATTTATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAGGCTGATACAGTACTCTGGAAGAATAAAAAAGACAACTGCAAAACTT</left_flank>
        <right_flank>TTATTTATTTGTGATTGCATATTCTGATATTTTCAGAACGATCGGAGGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGTGCCCTTTTATACAAACAGTTGTTGCTGCTGTCCTCGTGGCAAACCAGGTCAGTGGGAGGAGCCAATTGTTTGTACAAGCAATGTTCGGAGCAACACTACAGAAGTTATATCCAGATGTTCAGAAGGAGCAAAAAAGGGGAGAAACCCCGTAAAGTTGTTGTGTGTATGTTTTGAATTGACCAGAAGAGGGAGAGGACGTACCGAACTCGCCTATTGTGTTGTGGTGAGTGATAAGATTAAAAGAGGAGTGATAAGACCAGCGAAAGTTCAAAAATATAATATAGTGAGCTAGAGAGCAAAGTGATATGTAGCCCTAAGATTTTATAAAACCAGCTATTCCAGAACATTTGAAATCGTCTATTGTTAGATTTTCAAAGGGGTTATGGTTGCAAAAAGTGAATACGGCCTCATGGAAAATAGTTTTGCAGCACAACGTGGAAGTGAAAAGGCTGATACAGTACTCTGGAAGAATAAAAAAGACAACTGCAAAACTTTTTATTTATTTGTGATTGCATATTCTGATATTTTCAGAACGATCGGAGGTACCATCTAATGGACGATATGATTCTAATCCCAGAGGACCTAATATATTTCAAAATATCAAACAAAAAAAAAGGAAAATTATCAGAGAAAATATTAAAATAACCTACAGAGAGCCTCAACTCCTGTAGACTAAACCACCCGGCCCTAGTTCCTAGAAACTGATAACGGAAACTGCTGAATCTGTGCATTTTCTCCTCTCTCTTATGATACATGATATCTATTTTTGATCAGAAAGTGTGAACCCGAAGGCTAGTGCACACTGAACTTGCTCTTGTTCTCTTTCTTGCCCATCTCATCAATTTTCTCGTTATCAAACCATGATTTTTTGTCAATTTCATTTCATGATGTATCCATGTCTTCCGTGTCAGGCAACCATGATTTATGCTGAAGTCTAGAAAGAATTGCCAGGAAAAACAAACGAAATGAGGTCTTGAGACTATGACCAAGCAATG</canonical>
            <polymorphic>TTTGTGCCCTTTTATACAAACAGTTGTTGCTGCTGTCCTCGTGGCAAACCAGGTCAGTGGGAGGAGCCAATTGTTTGTACAAGCAATGTTCGGAGCAACACTACAGAAGTTATATCCAGATGTTCAGAAGGAGCAAAAAAGGGGAGAAACCCCGTAAAGTTGTTGTGTGTATGTTTTGAATTGACCAGAAGAGGGAGAGGACGTACCGAACTCGCCTATTGTGTTGTGGTGAGTGATAAGATTAAAAGAGGAGTGATAAGACCAGCGAAAGTTCAAAAATATAATATAGTGAGCTAGAGAGCAAAGTGATATGTAGCCCTAAGATTTTATAAAACCAGCTATTCCAGAACATTTGAAATCGTCTATTGTTAGATTTTCAAAGGGGTTATGGTTGCAAAAAGTGAATACGGCCTCATGGAAAATAGTTTTGCAGCACAACGTGGAAGTGAAAAGGCTGATACAGTACTCTGGAAGAATAAAAAAGACAACTGCAAAACTTKTTATTTATTTGTGATTGCATATTCTGATATTTTCAGAACGATCGGAGGTACCATCTAATGGACGATATGATTCTAATCCCAGAGGACCTAATATATTTCAAAATATCAAACAAAAAAAAAGGAAAATTATCAGAGAAAATATTAAAATAACCTACAGAGAGCCTCAACTCCTGTAGACTAAACCACCCGGCCCTAGTTCCTAGAAACTGATAACGGAAACTGCTGAATCTGTGCATTTTCTCCTCTCTCTTATGATACATGATATCTATTTTTGATCAGAAAGTGTGAACCCGAAGGCTAGTGCACACTGAACTTGCTCTTGTTCTCTTTCTTGCCCATCTCATCAATTTTCTCGTTATCAAACCATGATTTTTTGTCAATTTCATTTCATGATGTATCCATGTCTTCCGTGTCAGGCAACCATGATTTATGCTGAAGTCTAGAAAGAATTGCCAGGAAAAACAAACGAAATGAGGTCTTGAGACTATGACCAAGCAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTGAAAAGGCTGATACAGT</pcr_primer_p1>
		<pcr_primer_p2>GTGGTTTAGTCTACAGGAGTTGA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GAAGTGAAAAGGCTGATACAGTACTCTGGAAGAATAAAAAAGACAACTGCAAAACTTTTTATTTATTTGTGATTGCATATTCTGATATTTTCAGAACGATCGGAGGTACCATCTAATGGACGATATGATTCTAATCCCAGAGGACCTAATATATTTCAAAATATCAAACAAAAAAAAAGGAAAATTATCAGAGAAAATATTAAAATAACCTACAGAGAGCCTCAACTCCTGTAGACTAAACCAC</canonical_amplicon>
		<polymorphic_amplicon>GAAGTGAAAAGGCTGATACAGTACTCTGGAAGAATAAAAAAGACAACTGCAAAACTTKTTATTTATTTGTGATTGCATATTCTGATATTTTCAGAACGATCGGAGGTACCATCTAATGGACGATATGATTCTAATCCCAGAGGACCTAATATATTTCAAAATATCAAACAAAAAAAAAGGAAAATTATCAGAGAAAATATTAAAATAACCTACAGAGAGCCTCAACTCCTGTAGACTAAACCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35880</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>132487</contig_pos>
        <strand>+</strand>
        <context>CGATATACCG[G/T]TCCGGATTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTACTAATTTGAACAAAACTAAATTGAATGCCTGCCAAACGATATACCG</left_flank>
        <right_flank>TCCGGATTACTGTATGAAGCACTTGCTCGTCGTTTCTTAATGCTTATCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAAACCTAATTCTGGATCTTGCGACGACATCGTGTTTATTTCTGTTATGCTATTTTCAGGCATCATTCTCTTATCATGTTTTCTTGCTGTATTTTATGTATGTATATGTTTTTGTTGTAGAAAAATTTGTTGTTGTGCAAAAAAATAGATCATGACTTCTTGAAAACGTTTAATTTATGAATCTTCAGAACTTCCGTGGGGTTGATATTGGGGTTGCACAGCTGATGGTCTCTTGTTGCAACAGAAAAGTGTTTTGACTATAGCCATCATATTTCTCTTGTTGCAACTCAAATAAGATAGTTGCATTAAAACGGGTGTCACAATATTATCCACTGACATCAAGAAAAGAACAACAAAAAATGGTTGGAAATTATGAGCATGAATAAGAAAGCTAAGTGGAATAGTGATCTATAAAATAAGTTGAATAAATTACTATTAATAACACAACTTACTAATTTGAACAAAACTAAATTGAATGCCTGCCAAACGATATACCGTTCCGGATTACTGTATGAAGCACTTGCTCGTCGTTTCTTAATGCTTATCAGTAGAGGAATACACAAAAGTGACAATACAACATTAGAAATATTGAAGGCGATGAAAACCATCTGGAAAAGATTTCGTTCATTGTAAGCAGCAAAAGGTCTATACTGTGTAGTTCTACTTCATACTTGAAAGTTCAGATTTGCCTGGCTTTGACAATGTAGAGGAGCCAAAAGAAAAGATACTGACGATATCTTTTCCGGCAACCATTAAATAAATTAGATAAATCCAGTCATGTATAAACTTTTGAAAAGCTAATACAAATTGTTCAGTTGATGGAAAGAAGTGAGTGAAAAACTTAAAAAGAACCAAAAAAGCAGAGACAAACTGGAAGACTTGAATGGTAATGTGTATGATTAGGAAAGATAAAAAGGCAGGGACTGCCAAACCGATAATGATGAGTCTAAAATTTCAAAAAAATTTGAAAATGTTACAAAAGGATGTTTACGGTTGCT</canonical>
            <polymorphic>AATAAACCTAATTCTGGATCTTGCGACGACATCGTGTTTATTTCTGTTATGCTATTTTCAGGCATCATTCTCTTATCATGTTTTCTTGCTGTATTTTATGTATGTATATGTTTTTGTTGTAGAAAAATTTGTTGTTGTGCAAAAAAATAGATCATGACTTCTTGAAAACGTTTAATTTATGAATCTTCAGAACTTCCGTGGGGTTGATATTGGGGTTGCACAGCTGATGGTCTCTTGTTGCAACAGAAAAGTGTTTTGACTATAGCCATCATATTTCTCTTGTTGCAACTCAAATAAGATAGTTGCATTAAAACGGGTGTCACAATATTATCCACTGACATCAAGAAAAGAACAACAAAAAATGGTTGGAAATTATGAGCATGAATAAGAAAGCTAAGTGGAATAGTGATCTATAAAATAAGTTGAATAAATTACTATTAATAACACAACTTACTAATTTGAACAAAACTAAATTGAATGCCTGCCAAACGATATACCGKTCCGGATTACTGTATGAAGCACTTGCTCGTCGTTTCTTAATGCTTATCAGTAGAGGAATACACAAAAGTGACAATACAACATTAGAAATATTGAAGGCGATGAAAACCATCTGGAAAAGATTTCGTTCATTGTAAGCAGCAAAAGGTCTATACTGTGTAGTTCTACTTCATACTTGAAAGTTCAGATTTGCCTGGCTTTGACAATGTAGAGGAGCCAAAAGAAAAGATACTGACGATATCTTTTCCGGCAACCATTAAATAAATTAGATAAATCCAGTCATGTATAAACTTTTGAAAAGCTAATACAAATTGTTCAGTTGATGGAAAGAAGTGAGTGAAAAACTTAAAAAGAACCAAAAAAGCAGAGACAAACTGGAAGACTTGAATGGTAATGTGTATGATTAGGAAAGATAAAAAGGCAGGGACTGCCAAACCGATAATGATGAGTCTAAAATTTCAAAAAAATTTGAAAATGTTACAAAAGGATGTTTACGGTTGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>498 340 143 13 6</canonical_bands>
                <polymorphic_bands>511 340 143 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTATCCACTGACATCAAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGTCACTTTTGTGTATTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTATCCACTGACATCAAGAAAAGAACAACAAAAAATGGTTGGAAATTATGAGCATGAATAAGAAAGCTAAGTGGAATAGTGATCTATAAAATAAGTTGAATAAATTACTATTAATAACACAACTTACTAATTTGAACAAAACTAAATTGAATGCCTGCCAAACGATATACCGTTCCGGATTACTGTATGAAGCACTTGCTCGTCGTTTCTTAATGCTTATCAGTAGAGGAATACACAAAAGTGACAAT</canonical_amplicon>
		<polymorphic_amplicon>ATTATCCACTGACATCAAGAAAAGAACAACAAAAAATGGTTGGAAATTATGAGCATGAATAAGAAAGCTAAGTGGAATAGTGATCTATAAAATAAGTTGAATAAATTACTATTAATAACACAACTTACTAATTTGAACAAAACTAAATTGAATGCCTGCCAAACGATATACCGKTCCGGATTACTGTATGAAGCACTTGCTCGTCGTTTCTTAATGCTTATCAGTAGAGGAATACACAAAAGTGACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35881</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>136103</contig_pos>
        <strand>+</strand>
        <context>CTACAAGGAA[C/T]GATGGCGCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTGTACTCACTTTACAAAATACAAAAACGGAAGCTATACTACAAGGAA</left_flank>
        <right_flank>GATGGCGCATTTTTACCAAAAATAAAAAGCGAAACTCTGTGATCCGCCTA</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATCAAACACACAAAGTAACTCACCGCAATAGGATCCAACCCGAGCATTGGAGCAATAATTGATGGTGGAGGGTCATCATCGGTTTCGTTGAAAGTTGAGTTCATTGCAACTCGGAACTTTCAAAGCAAAATGAACAAAGTTGAGGGCGATGAACGAAGAAGCGAACGAGGCTCCACCCCCTTTTAAGACCAATTAAAGGGGCGGAGCTTTAGTCTTGAGAAGCGGGTTTTTAATCGGTATAAAATCTAAAATTATGTATAATTTGGTCATTTTGTTGGTGAAATATCACAAGGTAGCGGGAGAATAATTACAGATTACATAGAAAGAAGAATTCTTGGAAATCATTTTGCTCTGATACACATTTACTATTAGAAATGGATTTCTGATGATAAGTAGAAAAACGAAGAGAAAAAAAGTTTCGAAGAATGTGGATCAGAGATTTATACTTTGTACTCACTTTACAAAATACAAAAACGGAAGCTATACTACAAGGAACGATGGCGCATTTTTACCAAAAATAAAAAGCGAAACTCTGTGATCCGCCTAGATCCGGGAAAAAGTAGGCGAGCCAGTGATCATCCGAAAATGCATTCGTAAGTTCGAGATTTGTCGGATTAGGGATGAGCAATAGGAGAAAAATGCATTATTTTTCAGTTTGAAGTGATTAAAGGACACCAGCAAAAAAAACTGGCATATTTTTTAATTAACAAAATTCGAGAGTATCATGACAACATAAAACAAAGATATAGTCAATTTTGAACCTTAATTAAATCTCACATCAATTATATAATCATGATTAATCCGTATCTAAAATCCAAACAATGGGAACGTGAGGAAAAAACTGAAAGCAAATAGGATTTAAAAAAAACATCTTTTGTCTAACAATGAGGTAATCACATCATTTTCTATTCCAAGGTTAGCTAATCTTTTTCATTGTAGACTGTTGACTCTTGGTTTCTAAAAACTCCGCAAACCAGAACGGATAGAAAGTTGAAA</canonical>
            <polymorphic>AAAAATCAAACACACAAAGTAACTCACCGCAATAGGATCCAACCCGAGCATTGGAGCAATAATTGATGGTGGAGGGTCATCATCGGTTTCGTTGAAAGTTGAGTTCATTGCAACTCGGAACTTTCAAAGCAAAATGAACAAAGTTGAGGGCGATGAACGAAGAAGCGAACGAGGCTCCACCCCCTTTTAAGACCAATTAAAGGGGCGGAGCTTTAGTCTTGAGAAGCGGGTTTTTAATCGGTATAAAATCTAAAATTATGTATAATTTGGTCATTTTGTTGGTGAAATATCACAAGGTAGCGGGAGAATAATTACAGATTACATAGAAAGAAGAATTCTTGGAAATCATTTTGCTCTGATACACATTTACTATTAGAAATGGATTTCTGATGATAAGTAGAAAAACGAAGAGAAAAAAAGTTTCGAAGAATGTGGATCAGAGATTTATACTTTGTACTCACTTTACAAAATACAAAAACGGAAGCTATACTACAAGGAAYGATGGCGCATTTTTACCAAAAATAAAAAGCGAAACTCTGTGATCCGCCTAGATCCGGGAAAAAGTAGGCGAGCCAGTGATCATCCGAAAATGCATTCGTAAGTTCGAGATTTGTCGGATTAGGGATGAGCAATAGGAGAAAAATGCATTATTTTTCAGTTTGAAGTGATTAAAGGACACCAGCAAAAAAAACTGGCATATTTTTTAATTAACAAAATTCGAGAGTATCATGACAACATAAAACAAAGATATAGTCAATTTTGAACCTTAATTAAATCTCACATCAATTATATAATCATGATTAATCCGTATCTAAAATCCAAACAATGGGAACGTGAGGAAAAAACTGAAAGCAAATAGGATTTAAAAAAAACATCTTTTGTCTAACAATGAGGTAATCACATCATTTTCTATTCCAAGGTTAGCTAATCTTTTTCATTGTAGACTGTTGACTCTTGGTTTCTAAAAACTCCGCAAACCAGAACGGATAGAAAGTTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGAATGTGGATCAGAGATTTA</pcr_primer_p1>
		<pcr_primer_p2>CCTTTAATCACTTCAAACTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAAGAATGTGGATCAGAGATTTATACTTTGTACTCACTTTACAAAATACAAAAACGGAAGCTATACTACAAGGAACGATGGCGCATTTTTACCAAAAATAAAAAGCGAAACTCTGTGATCCGCCTAGATCCGGGAAAAAGTAGGCGAGCCAGTGATCATCCGAAAATGCATTCGTAAGTTCGAGATTTGTCGGATTAGGGATGAGCAATAGGAGAAAAATGCATTATTTTTCAGTTTGAAGTGATTAAAGG</canonical_amplicon>
		<polymorphic_amplicon>GAAGAATGTGGATCAGAGATTTATACTTTGTACTCACTTTACAAAATACAAAAACGGAAGCTATACTACAAGGAAYGATGGCGCATTTTTACCAAAAATAAAAAGCGAAACTCTGTGATCCGCCTAGATCCGGGAAAAAGTAGGCGAGCCAGTGATCATCCGAAAATGCATTCGTAAGTTCGAGATTTGTCGGATTAGGGATGAGCAATAGGAGAAAAATGCATTATTTTTCAGTTTGAAGTGATTAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35882</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>157567</contig_pos>
        <strand>+</strand>
        <context>AATTCTATTT[G/T]AAAAAAAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTAATGAAAGATGCGACATAAACTAATATGATTTTATCAAAATTCTATTT</left_flank>
        <right_flank>AAAAAAAGTTGTTCTCAATAATAATTATGGATTGTAGAGATTTTTTAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAATCTGTTGCTCAACTTTTAACCCAAACCTCTTTTCTTTTTCCCTTTTTCTGTTTTCCCCATGACGATACGTATTTGTTTCGAAGAACCGATTTTTGAATTTTCTGAACAATAGCTTTACTCTGGTGCGTTTTCTTGGCGTTGGGTGTAATTTATGGTATCACAAATTTTTTTGATTAAAGTTTGGAATGAAATTTTCAGATTTGGTTTATGTCTGCCTGATTTTCACGAAATCATTGTTGAAGACATCAGTTTAGGAACTTTCTATGTGTTATAGATCCCATGGCCTCCGAGTACTTATTTGTACTCATTTTCATCGTTGCTGCGGATTTTACCCCCGTGGCAAACTAAACATGAAAAGTGTTCAGAAAGATTTCGTTTCAGGATACTGCACCACCTACAACTATTTTGATGCGAAATAAAGATATGTGTGGAAAACTGATCAACTAATGAAAGATGCGACATAAACTAATATGATTTTATCAAAATTCTATTTAAAAAAAAGTTGTTCTCAATAATAATTATGGATTGTAGAGATTTTTTAAAGGACCAGAGTTTCATAGTAGAGCCAAATTTTTCAAATTGGACAGGGTATATTTGACATTGTTTACTAAAGCCTATATGAAATGAAAATGAAAATTATTTAAAAATAAGCTTCTCCTGAATCTTTTCTTATTTTCAAGGTTCTTCAATCCATCATATCTCATCCTCCCGACGTCTAGAAAGCATTCAATATCAAATTAGCATTTATCTACAATATGATCATATTCTGGTGACGTCTTCATCGTTCCTATTCAGATAGTGATTAACATTAACATCCATAGAAGCTGAACCAAGCGGTTTCGTACTGCTTAATGTTATCAGACTACAGTAAATATACAAATAAAGAGAGAAAAGGGAGGAGAGGACTTGATTTGTCGTTGTGTATTGGTAGAAGCTAATTTTAAGAATTGGCTGTAAAATAATTGAGCTTATCGAACATTTGAAAAATGGGAAA</canonical>
            <polymorphic>GAAAAATCTGTTGCTCAACTTTTAACCCAAACCTCTTTTCTTTTTCCCTTTTTCTGTTTTCCCCATGACGATACGTATTTGTTTCGAAGAACCGATTTTTGAATTTTCTGAACAATAGCTTTACTCTGGTGCGTTTTCTTGGCGTTGGGTGTAATTTATGGTATCACAAATTTTTTTGATTAAAGTTTGGAATGAAATTTTCAGATTTGGTTTATGTCTGCCTGATTTTCACGAAATCATTGTTGAAGACATCAGTTTAGGAACTTTCTATGTGTTATAGATCCCATGGCCTCCGAGTACTTATTTGTACTCATTTTCATCGTTGCTGCGGATTTTACCCCCGTGGCAAACTAAACATGAAAAGTGTTCAGAAAGATTTCGTTTCAGGATACTGCACCACCTACAACTATTTTGATGCGAAATAAAGATATGTGTGGAAAACTGATCAACTAATGAAAGATGCGACATAAACTAATATGATTTTATCAAAATTCTATTTKAAAAAAAGTTGTTCTCAATAATAATTATGGATTGTAGAGATTTTTTAAAGGACCAGAGTTTCATAGTAGAGCCAAATTTTTCAAATTGGACAGGGTATATTTGACATTGTTTACTAAAGCCTATATGAAATGAAAATGAAAATTATTTAAAAATAAGCTTCTCCTGAATCTTTTCTTATTTTCAAGGTTCTTCAATCCATCATATCTCATCCTCCCGACGTCTAGAAAGCATTCAATATCAAATTAGCATTTATCTACAATATGATCATATTCTGGTGACGTCTTCATCGTTCCTATTCAGATAGTGATTAACATTAACATCCATAGAAGCTGAACCAAGCGGTTTCGTACTGCTTAATGTTATCAGACTACAGTAAATATACAAATAAAGAGAGAAAAGGGAGGAGAGGACTTGATTTGTCGTTGTGTATTGGTAGAAGCTAATTTTAAGAATTGGCTGTAAAATAATTGAGCTTATCGAACATTTGAAAAATGGGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 352 102 47</canonical_bands>
                <polymorphic_bands>546 352 102</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>318 162 158 102 92 53 47 40 22 6</canonical_bands>
                <polymorphic_bands>365 162 158 102 92 53 40 22 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTAATGAAAGATGCGACATAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGAACCTTGAAAATAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AACTAATGAAAGATGCGACATAAACTAATATGATTTTATCAAAATTCTATTTAAAAAAAAGTTGTTCTCAATAATAATTATGGATTGTAGAGATTTTTTAAAGGACCAGAGTTTCATAGTAGAGCCAAATTTTTCAAATTGGACAGGGTATATTTGACATTGTTTACTAAAGCCTATATGAAATGAAAATGAAAATTATTTAAAAATAAGCTTCTCCTGAATCTTTTCTTATTTTCAAGGTTCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>AACTAATGAAAGATGCGACATAAACTAATATGATTTTATCAAAATTCTATTTKAAAAAAAGTTGTTCTCAATAATAATTATGGATTGTAGAGATTTTTTAAAGGACCAGAGTTTCATAGTAGAGCCAAATTTTTCAAATTGGACAGGGTATATTTGACATTGTTTACTAAAGCCTATATGAAATGAAAATGAAAATTATTTAAAAATAAGCTTCTCCTGAATCTTTTCTTATTTTCAAGGTTCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35883</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>158064</contig_pos>
        <strand>+</strand>
        <context>TGAAAAATGG[G/T]AAATTTGCGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTAAGAATTGGCTGTAAAATAATTGAGCTTATCGAACATTTGAAAAATGG</left_flank>
        <right_flank>AAATTTGCGAAAATTTGTTTGAATATTTGTTTCTAACATCAAATTACAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAAAAAAGTTGTTCTCAATAATAATTATGGATTGTAGAGATTTTTTAAAGGACCAGAGTTTCATAGTAGAGCCAAATTTTTCAAATTGGACAGGGTATATTTGACATTGTTTACTAAAGCCTATATGAAATGAAAATGAAAATTATTTAAAAATAAGCTTCTCCTGAATCTTTTCTTATTTTCAAGGTTCTTCAATCCATCATATCTCATCCTCCCGACGTCTAGAAAGCATTCAATATCAAATTAGCATTTATCTACAATATGATCATATTCTGGTGACGTCTTCATCGTTCCTATTCAGATAGTGATTAACATTAACATCCATAGAAGCTGAACCAAGCGGTTTCGTACTGCTTAATGTTATCAGACTACAGTAAATATACAAATAAAGAGAGAAAAGGGAGGAGAGGACTTGATTTGTCGTTGTGTATTGGTAGAAGCTAATTTTAAGAATTGGCTGTAAAATAATTGAGCTTATCGAACATTTGAAAAATGGGAAATTTGCGAAAATTTGTTTGAATATTTGTTTCTAACATCAAATTACAGATCAATTTATTTAAAAATTTATGCAAAACGTGCGAAAATGAGCTCATGAAAAATGCTTCGAATAGCAATGATCTATGAAAAATGGTGCTTATACAAAACTGCTTAAATCGTTCTAAAAAAGTGGTTCCAAACAGATACTGCCAGAAACAAGTCTGCCTCGAATGTGGCAAAATTTATTTTGAAGATCATAAAATTTGAAGAAATTAAAAAAAAGCTTTACTTTCTGTAGTTGACTACTATTTTTTTTCCACATGAATTTTGATGCCGTAATGTAAAGACTGTAAAGTTCTCACTAATTCAAAAATGTAGTTTACTTCAACTGTGCAAAAACTTCAATCCTGCAGAAAATAGTTCAGAAGTCTGATCTCTTACCGAGAAAGCGCAACAAGTATTGCAGTAGTAAAAAGTAGTCGTTGCAGCATAACCAAATGATCTTGTTGTCTTCCTCGAG</canonical>
            <polymorphic>TTAAAAAAAAGTTGTTCTCAATAATAATTATGGATTGTAGAGATTTTTTAAAGGACCAGAGTTTCATAGTAGAGCCAAATTTTTCAAATTGGACAGGGTATATTTGACATTGTTTACTAAAGCCTATATGAAATGAAAATGAAAATTATTTAAAAATAAGCTTCTCCTGAATCTTTTCTTATTTTCAAGGTTCTTCAATCCATCATATCTCATCCTCCCGACGTCTAGAAAGCATTCAATATCAAATTAGCATTTATCTACAATATGATCATATTCTGGTGACGTCTTCATCGTTCCTATTCAGATAGTGATTAACATTAACATCCATAGAAGCTGAACCAAGCGGTTTCGTACTGCTTAATGTTATCAGACTACAGTAAATATACAAATAAAGAGAGAAAAGGGAGGAGAGGACTTGATTTGTCGTTGTGTATTGGTAGAAGCTAATTTTAAGAATTGGCTGTAAAATAATTGAGCTTATCGAACATTTGAAAAATGGKAAATTTGCGAAAATTTGTTTGAATATTTGTTTCTAACATCAAATTACAGATCAATTTATTTAAAAATTTATGCAAAACGTGCGAAAATGAGCTCATGAAAAATGCTTCGAATAGCAATGATCTATGAAAAATGGTGCTTATACAAAACTGCTTAAATCGTTCTAAAAAAGTGGTTCCAAACAGATACTGCCAGAAACAAGTCTGCCTCGAATGTGGCAAAATTTATTTTGAAGATCATAAAATTTGAAGAAATTAAAAAAAAGCTTTACTTTCTGTAGTTGACTACTATTTTTTTTCCACATGAATTTTGATGCCGTAATGTAAAGACTGTAAAGTTCTCACTAATTCAAAAATGTAGTTTACTTCAACTGTGCAAAAACTTCAATCCTGCAGAAAATAGTTCAGAAGTCTGATCTCTTACCGAGAAAGCGCAACAAGTATTGCAGTAGTAAAAAGTAGTCGTTGCAGCATAACCAAATGATCTTGTTGTCTTCCTCGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTTGATTTGTCGTTGTGTATT</pcr_primer_p1>
		<pcr_primer_p2>AGAACGATTTAAGCAGTTTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GACTTGATTTGTCGTTGTGTATTGGTAGAAGCTAATTTTAAGAATTGGCTGTAAAATAATTGAGCTTATCGAACATTTGAAAAATGGGAAATTTGCGAAAATTTGTTTGAATATTTGTTTCTAACATCAAATTACAGATCAATTTATTTAAAAATTTATGCAAAACGTGCGAAAATGAGCTCATGAAAAATGCTTCGAATAGCAATGATCTATGAAAAATGGTGCTTATACAAAACTGCTTAAATCGTTCT</canonical_amplicon>
		<polymorphic_amplicon>GACTTGATTTGTCGTTGTGTATTGGTAGAAGCTAATTTTAAGAATTGGCTGTAAAATAATTGAGCTTATCGAACATTTGAAAAATGGKAAATTTGCGAAAATTTGTTTGAATATTTGTTTCTAACATCAAATTACAGATCAATTTATTTAAAAATTTATGCAAAACGTGCGAAAATGAGCTCATGAAAAATGCTTCGAATAGCAATGATCTATGAAAAATGGTGCTTATACAAAACTGCTTAAATCGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35884</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>160308</contig_pos>
        <strand>+</strand>
        <context>CAGTCGGTTT[C/T]TAAAAAGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATAACGGCATTATGCCCCAGTAAAACATTAAAGTAACAACAGTCGGTTT</left_flank>
        <right_flank>TAAAAAGAAAATGAAATGAGAGCTAAATCAACAATTGGACGTCTTCCTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAATCGGTTCTCGTAGATCACGGAATCTTCTGGATACTCCATTGAAGTAGATCGTTTTCCTGAAAAAAAAACAGTAAATAAAGATTTTTGATCTTGACAAAGCCCTATTTTAAAAGTGTATATTTACTTTTCTCCAAAAAATGTGCATATATACAATGTAACCATGATCTCTCTTTCTTCTCATCGCCGCGACCTTTCTCATTTTAGAAATCTGATCTTTCTCGAATTTCCAAAAGCGCGAACATACTTGCGCCTTTCACACCCCTTATTTGCTGAGCAATTAAGAACAGATTACTGTAGTGCTTACCAAAGAGTTCTCGGCCACGTCGTTTGTTGAACATGCTGCTGCTGCCACGTTTCAGAAGTCGTCTGGAGACATCAATCGAGTCCACTGAAATTTTAAAGACCGGACTGTGTATTGCAATTTTCAGTGTACGATTATCAGTATATAACGGCATTATGCCCCAGTAAAACATTAAAGTAACAACAGTCGGTTTCTAAAAAGAAAATGAAATGAGAGCTAAATCAACAATTGGACGTCTTCCTAGGATTCATGACTCTCAGAAACCGTTGATAATTAACAAAACGCCTTAAACGCTCCATAAAATTACAGTTTTTTTTGTATCTTTTGAAATCATATCATAAATTTTTAATAATGTTTAGAAGTGTTATGTTGTTTTCCGGTTACTAGATTGCAGGTAGTTTTTAAAAACATTCTGAAAGAAACTGAGATCTATTTGGATCTATTTCATCTCATAATTTCCGATTCCTATGTTTTCTCTTTTTTCTTATTATTGTGTCTCTTGAATTTCTCACATTGATTTGGCATTACACGGAACGCTCTCAAATTCATCGGCTCCTCTTCATCGAACCACAATGGCGAAGCGGCAACAATCGAACACAACACTGAAAAAATATAGATCTAGAAGAAGACGAAGAAAATGATTCATGAATTTTGTATTCATCTATTTTTCATTCCGAGACCGGACCCGAAAACA</canonical>
            <polymorphic>CTGAATCGGTTCTCGTAGATCACGGAATCTTCTGGATACTCCATTGAAGTAGATCGTTTTCCTGAAAAAAAAACAGTAAATAAAGATTTTTGATCTTGACAAAGCCCTATTTTAAAAGTGTATATTTACTTTTCTCCAAAAAATGTGCATATATACAATGTAACCATGATCTCTCTTTCTTCTCATCGCCGCGACCTTTCTCATTTTAGAAATCTGATCTTTCTCGAATTTCCAAAAGCGCGAACATACTTGCGCCTTTCACACCCCTTATTTGCTGAGCAATTAAGAACAGATTACTGTAGTGCTTACCAAAGAGTTCTCGGCCACGTCGTTTGTTGAACATGCTGCTGCTGCCACGTTTCAGAAGTCGTCTGGAGACATCAATCGAGTCCACTGAAATTTTAAAGACCGGACTGTGTATTGCAATTTTCAGTGTACGATTATCAGTATATAACGGCATTATGCCCCAGTAAAACATTAAAGTAACAACAGTCGGTTTYTAAAAAGAAAATGAAATGAGAGCTAAATCAACAATTGGACGTCTTCCTAGGATTCATGACTCTCAGAAACCGTTGATAATTAACAAAACGCCTTAAACGCTCCATAAAATTACAGTTTTTTTTGTATCTTTTGAAATCATATCATAAATTTTTAATAATGTTTAGAAGTGTTATGTTGTTTTCCGGTTACTAGATTGCAGGTAGTTTTTAAAAACATTCTGAAAGAAACTGAGATCTATTTGGATCTATTTCATCTCATAATTTCCGATTCCTATGTTTTCTCTTTTTTCTTATTATTGTGTCTCTTGAATTTCTCACATTGATTTGGCATTACACGGAACGCTCTCAAATTCATCGGCTCCTCTTCATCGAACCACAATGGCGAAGCGGCAACAATCGAACACAACACTGAAAAAATATAGATCTAGAAGAAGACGAAGAAAATGATTCATGAATTTTGTATTCATCTATTTTTCATTCCGAGACCGGACCCGAAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTCGTCTGGAGACATCAAT</pcr_primer_p1>
		<pcr_primer_p2>TGTAATTTTATGGAGCGTTTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGTCGTCTGGAGACATCAATCGAGTCCACTGAAATTTTAAAGACCGGACTGTGTATTGCAATTTTCAGTGTACGATTATCAGTATATAACGGCATTATGCCCCAGTAAAACATTAAAGTAACAACAGTCGGTTTCTAAAAAGAAAATGAAATGAGAGCTAAATCAACAATTGGACGTCTTCCTAGGATTCATGACTCTCAGAAACCGTTGATAATTAACAAAACGCCTTAAACGCTCCATAAAATTACA</canonical_amplicon>
		<polymorphic_amplicon>AAGTCGTCTGGAGACATCAATCGAGTCCACTGAAATTTTAAAGACCGGACTGTGTATTGCAATTTTCAGTGTACGATTATCAGTATATAACGGCATTATGCCCCAGTAAAACATTAAAGTAACAACAGTCGGTTTYTAAAAAGAAAATGAAATGAGAGCTAAATCAACAATTGGACGTCTTCCTAGGATTCATGACTCTCAGAAACCGTTGATAATTAACAAAACGCCTTAAACGCTCCATAAAATTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35885</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>161246</contig_pos>
        <strand></strand>
        <context>atctgaccat[T/G]rgccgctgtt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTAATACTAGTAACATTTCAAATTTCAACTTCCGACCAAAATCTGACCAT</left_flank>
        <right_flank>AGCCGCTGTTCTTGGGCAAGTTCCTGCTAGAACCTGGCCGCACATTTTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAAATGATTCATGAATTTTGTATTCATCTATTTTTCATTCCGAGACCGGACCCGAAAACACTGAAAGAAAAATGCGAGTCGCGGGAAAAATCGCGAAGGGTGGTAATTTTTGAGAATCCGCACGCGAGGAGATTCGGAAAAAAATGACGTTGGTGTTCAGAGAGAAAGATAAATTCTGGGTACGAATTCTAGGACCCATGATTTAAATTAATGAAAAACGACATATTTCGTTTCGAATGAATTAACCATTTGAAAAACCACCAGAGAATCCTTCAGAAAACATAAAGATTTCGTTGAAACTTGAGAAAAAAGTTCGGCCGAGTACAGTTAGTCGGAAAATGTTAAAAAACAGAAAAAAAAATAGAATGAAGATTCCTCTAGAAGAATAGTTCCTATACTAGGGCTTCGCTGGCAAATTCTGGTCGGACCTAGTAGTATTCCAAAAAATTAATACTAGTAACATTTCAAATTTCAACTTCCGACCAAAATCTGACCATTAGCCGCTGTTCTTGGGCAAGTTCCTGCTAGAACCTGGCCGCACATTTTTAATCAAGTCCAATTTTGGTTTTTTGTTTGTGGTCACTTTTTCGTGATCTATCTGCTCAGGAATTGGTAATGGATCCACCGGACTGTGTATTGCAATTTTCAGTGTACGATTATCAGTATATAACGGCATTATGCCCCAGTAAAACATTAAAGTAACAACAGTCGGTTTCTAAAAAGAAAATGAAATGAGAGCTAAATCAACAATTGGACGTCTTCCTAGGATTCATGACTCTCAGAAACCGTTGATAATTAACAAAACGCCTTAAACGCTCCATAAAATTACAGTTTTTTTTGTAACTTTTGAAGTCATATCATAAATTTTTAATAATGTTTAGAAGTGTTATGTTGTTTTCCGGTTACTAGATTACTTACCGAAGAACAGAAAAACCGTTGAATAGTTCATGATTTCTGCTGAGGGTGTCACACAAGAAGCTTTCACACAACCACTGGAA</canonical>
            <polymorphic>AGAAAATGATTCATGAATTTTGTATTCATCTATTTTTCATTCCGAGACCGGACCCGAAAACACTGAAAGAAAAATGCGAGTCGCGGGAAAAATCGCGAAGGGTGGTAATTTTTGAGAATCCGCACGCGAGGAGATTCGGAAAAAAATGACGTTGGTGTTCAGAGAGAAAGATAAATTCTGGGTACGAATTCTAGGACCCATGATTTAAATTAATGAAAAACGACATATTTCGTTTCGAATGAATTAACCATTTGAAAAACCACCAGAGAATCCTTCAGAAAACATAAAGATTTCGTTGAAACTTGAGAAAAAAGTTCGGCCGAGTACAGTTAGTCGGAAAATGTTAAAAAACAGAAAAAAAAATAGAATGAAGATTCCTCTAGAAGAATAGTTCCTATACTAGGGCTTCGCTGGCAAATTCTGGTCGGACCTAGTAGTATTCCAAAAAATTAATACTAGTAACATTTCAAATTTCAACTTCCGACCAAAATCTGACCATKAGCCGCTGTTCTTGGGCAAGTTCCTGCTAGAACCTGGCCGCACATTTTTAATCAAGTCCAATTTTGGTTTTTTGTTTGTGGTCACTTTTTCGTGATCTATCTGCTCAGGAATTGGTAATGGATCCACCGGACTGTGTATTGCAATTTTCAGTGTACGATTATCAGTATATAACGGCATTATGCCCCAGTAAAACATTAAAGTAACAACAGTCGGTTTCTAAAAAGAAAATGAAATGAGAGCTAAATCAACAATTGGACGTCTTCCTAGGATTCATGACTCTCAGAAACCGTTGATAATTAACAAAACGCCTTAAACGCTCCATAAAATTACAGTTTTTTTTGTAACTTTTGAAGTCATATCATAAATTTTTAATAATGTTTAGAAGTGTTATGTTGTTTTCCGGTTACTAGATTACTTACCGAAGAACAGAAAAACCGTTGAATAGTTCATGATTTCTGCTGAGGGTGTCACACAAGAAGCTTTCACACAACCACTGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGTACAGTTAGTCGGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAACCAAAATTGGACTTGATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGAGTACAGTTAGTCGGAAAATGTTAAAAAACAGAAAAAAAAATAGAATGAAGATTCCTCTAGAAGAATAGTTCCTATACTAGGGCTTCGCTGGCAAATTCTGGTCGGACCTAGTAGTATTCCAAAAAATTAATACTAGTAACATTTCAAATTTCAACTTCCGACCAAAATCTGACCATTAGCCGCTGTTCTTGGGCAAGTTCCTGCTAGAACCTGGCCGCACATTTTTAATCAAGTCCAATTTTGGTTT</canonical_amplicon>
		<polymorphic_amplicon>CGAGTACAGTTAGTCGGAAAATGTTAAAAAACAGAAAAAAAAATAGAATGAAGATTCCTCTAGAAGAATAGTTCCTATACTAGGGCTTCGCTGGCAAATTCTGGTCGGACCTAGTAGTATTCCAAAAAATTAATACTAGTAACATTTCAAATTTCAACTTCCGACCAAAATCTGACCATKAGCCGCTGTTCTTGGGCAAGTTCCTGCTAGAACCTGGCCGCACATTTTTAATCAAGTCCAATTTTGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35886</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>161247</contig_pos>
        <strand></strand>
        <context>tctgaccatk[A/G]gccgctgttc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATACTAGTAACATTTCAAATTTCAACTTCCGACCAAAATCTGACCATT</left_flank>
        <right_flank>GCCGCTGTTCTTGGGCAAGTTCCTGCTAGAACCTGGCCGCACATTTTTAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAATGATTCATGAATTTTGTATTCATCTATTTTTCATTCCGAGACCGGACCCGAAAACACTGAAAGAAAAATGCGAGTCGCGGGAAAAATCGCGAAGGGTGGTAATTTTTGAGAATCCGCACGCGAGGAGATTCGGAAAAAAATGACGTTGGTGTTCAGAGAGAAAGATAAATTCTGGGTACGAATTCTAGGACCCATGATTTAAATTAATGAAAAACGACATATTTCGTTTCGAATGAATTAACCATTTGAAAAACCACCAGAGAATCCTTCAGAAAACATAAAGATTTCGTTGAAACTTGAGAAAAAAGTTCGGCCGAGTACAGTTAGTCGGAAAATGTTAAAAAACAGAAAAAAAAATAGAATGAAGATTCCTCTAGAAGAATAGTTCCTATACTAGGGCTTCGCTGGCAAATTCTGGTCGGACCTAGTAGTATTCCAAAAAATTAATACTAGTAACATTTCAAATTTCAACTTCCGACCAAAATCTGACCATTAGCCGCTGTTCTTGGGCAAGTTCCTGCTAGAACCTGGCCGCACATTTTTAATCAAGTCCAATTTTGGTTTTTTGTTTGTGGTCACTTTTTCGTGATCTATCTGCTCAGGAATTGGTAATGGATCCACCGGACTGTGTATTGCAATTTTCAGTGTACGATTATCAGTATATAACGGCATTATGCCCCAGTAAAACATTAAAGTAACAACAGTCGGTTTCTAAAAAGAAAATGAAATGAGAGCTAAATCAACAATTGGACGTCTTCCTAGGATTCATGACTCTCAGAAACCGTTGATAATTAACAAAACGCCTTAAACGCTCCATAAAATTACAGTTTTTTTTGTAACTTTTGAAGTCATATCATAAATTTTTAATAATGTTTAGAAGTGTTATGTTGTTTTCCGGTTACTAGATTACTTACCGAAGAACAGAAAAACCGTTGAATAGTTCATGATTTCTGCTGAGGGTGTCACACAAGAAGCTTTCACACAACCACTGGAAT</canonical>
            <polymorphic>GAAAATGATTCATGAATTTTGTATTCATCTATTTTTCATTCCGAGACCGGACCCGAAAACACTGAAAGAAAAATGCGAGTCGCGGGAAAAATCGCGAAGGGTGGTAATTTTTGAGAATCCGCACGCGAGGAGATTCGGAAAAAAATGACGTTGGTGTTCAGAGAGAAAGATAAATTCTGGGTACGAATTCTAGGACCCATGATTTAAATTAATGAAAAACGACATATTTCGTTTCGAATGAATTAACCATTTGAAAAACCACCAGAGAATCCTTCAGAAAACATAAAGATTTCGTTGAAACTTGAGAAAAAAGTTCGGCCGAGTACAGTTAGTCGGAAAATGTTAAAAAACAGAAAAAAAAATAGAATGAAGATTCCTCTAGAAGAATAGTTCCTATACTAGGGCTTCGCTGGCAAATTCTGGTCGGACCTAGTAGTATTCCAAAAAATTAATACTAGTAACATTTCAAATTTCAACTTCCGACCAAAATCTGACCATTRGCCGCTGTTCTTGGGCAAGTTCCTGCTAGAACCTGGCCGCACATTTTTAATCAAGTCCAATTTTGGTTTTTTGTTTGTGGTCACTTTTTCGTGATCTATCTGCTCAGGAATTGGTAATGGATCCACCGGACTGTGTATTGCAATTTTCAGTGTACGATTATCAGTATATAACGGCATTATGCCCCAGTAAAACATTAAAGTAACAACAGTCGGTTTCTAAAAAGAAAATGAAATGAGAGCTAAATCAACAATTGGACGTCTTCCTAGGATTCATGACTCTCAGAAACCGTTGATAATTAACAAAACGCCTTAAACGCTCCATAAAATTACAGTTTTTTTTGTAACTTTTGAAGTCATATCATAAATTTTTAATAATGTTTAGAAGTGTTATGTTGTTTTCCGGTTACTAGATTACTTACCGAAGAACAGAAAAACCGTTGAATAGTTCATGATTTCTGCTGAGGGTGTCACACAAGAAGCTTTCACACAACCACTGGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>318 240 203 97 86 35 21</canonical_bands>
                <polymorphic_bands>318 240 203 132 86 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAGTACAGTTAGTCGGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAACCAAAATTGGACTTGATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGAGTACAGTTAGTCGGAAAATGTTAAAAAACAGAAAAAAAAATAGAATGAAGATTCCTCTAGAAGAATAGTTCCTATACTAGGGCTTCGCTGGCAAATTCTGGTCGGACCTAGTAGTATTCCAAAAAATTAATACTAGTAACATTTCAAATTTCAACTTCCGACCAAAATCTGACCATTAGCCGCTGTTCTTGGGCAAGTTCCTGCTAGAACCTGGCCGCACATTTTTAATCAAGTCCAATTTTGGTTT</canonical_amplicon>
		<polymorphic_amplicon>CGAGTACAGTTAGTCGGAAAATGTTAAAAAACAGAAAAAAAAATAGAATGAAGATTCCTCTAGAAGAATAGTTCCTATACTAGGGCTTCGCTGGCAAATTCTGGTCGGACCTAGTAGTATTCCAAAAAATTAATACTAGTAACATTTCAAATTTCAACTTCCGACCAAAATCTGACCATTRGCCGCTGTTCTTGGGCAAGTTCCTGCTAGAACCTGGCCGCACATTTTTAATCAAGTCCAATTTTGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35887</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>161284</contig_pos>
        <strand></strand>
        <context>tagaacctgg[C/T]cGCACATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATCTGACCATTAGCCGCTGTTCTTGGGCAAGTTCCTGCTAGAACCTGG</left_flank>
        <right_flank>CGCACATTTTTAATCAAGTCCAATTTTGGTTTTTTGTTTGTGGTCACTTT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCCGAGACCGGACCCGAAAACACTGAAAGAAAAATGCGAGTCGCGGGAAAAATCGCGAAGGGTGGTAATTTTTGAGAATCCGCACGCGAGGAGATTCGGAAAAAAATGACGTTGGTGTTCAGAGAGAAAGATAAATTCTGGGTACGAATTCTAGGACCCATGATTTAAATTAATGAAAAACGACATATTTCGTTTCGAATGAATTAACCATTTGAAAAACCACCAGAGAATCCTTCAGAAAACATAAAGATTTCGTTGAAACTTGAGAAAAAAGTTCGGCCGAGTACAGTTAGTCGGAAAATGTTAAAAAACAGAAAAAAAAATAGAATGAAGATTCCTCTAGAAGAATAGTTCCTATACTAGGGCTTCGCTGGCAAATTCTGGTCGGACCTAGTAGTATTCCAAAAAATTAATACTAGTAACATTTCAAATTTCAACTTCCGACCAAAATCTGACCATTAGCCGCTGTTCTTGGGCAAGTTCCTGCTAGAACCTGGCCGCACATTTTTAATCAAGTCCAATTTTGGTTTTTTGTTTGTGGTCACTTTTTCGTGATCTATCTGCTCAGGAATTGGTAATGGATCCACCGGACTGTGTATTGCAATTTTCAGTGTACGATTATCAGTATATAACGGCATTATGCCCCAGTAAAACATTAAAGTAACAACAGTCGGTTTCTAAAAAGAAAATGAAATGAGAGCTAAATCAACAATTGGACGTCTTCCTAGGATTCATGACTCTCAGAAACCGTTGATAATTAACAAAACGCCTTAAACGCTCCATAAAATTACAGTTTTTTTTGTAACTTTTGAAGTCATATCATAAATTTTTAATAATGTTTAGAAGTGTTATGTTGTTTTCCGGTTACTAGATTACTTACCGAAGAACAGAAAAACCGTTGAATAGTTCATGATTTCTGCTGAGGGTGTCACACAAGAAGCTTTCACACAACCACTGGAATAGTAGTCGGGTGGGGCTGCTTGAAAGTGAGAATGGAT</canonical>
            <polymorphic>ATTCCGAGACCGGACCCGAAAACACTGAAAGAAAAATGCGAGTCGCGGGAAAAATCGCGAAGGGTGGTAATTTTTGAGAATCCGCACGCGAGGAGATTCGGAAAAAAATGACGTTGGTGTTCAGAGAGAAAGATAAATTCTGGGTACGAATTCTAGGACCCATGATTTAAATTAATGAAAAACGACATATTTCGTTTCGAATGAATTAACCATTTGAAAAACCACCAGAGAATCCTTCAGAAAACATAAAGATTTCGTTGAAACTTGAGAAAAAAGTTCGGCCGAGTACAGTTAGTCGGAAAATGTTAAAAAACAGAAAAAAAAATAGAATGAAGATTCCTCTAGAAGAATAGTTCCTATACTAGGGCTTCGCTGGCAAATTCTGGTCGGACCTAGTAGTATTCCAAAAAATTAATACTAGTAACATTTCAAATTTCAACTTCCGACCAAAATCTGACCATTAGCCGCTGTTCTTGGGCAAGTTCCTGCTAGAACCTGGYCGCACATTTTTAATCAAGTCCAATTTTGGTTTTTTGTTTGTGGTCACTTTTTCGTGATCTATCTGCTCAGGAATTGGTAATGGATCCACCGGACTGTGTATTGCAATTTTCAGTGTACGATTATCAGTATATAACGGCATTATGCCCCAGTAAAACATTAAAGTAACAACAGTCGGTTTCTAAAAAGAAAATGAAATGAGAGCTAAATCAACAATTGGACGTCTTCCTAGGATTCATGACTCTCAGAAACCGTTGATAATTAACAAAACGCCTTAAACGCTCCATAAAATTACAGTTTTTTTTGTAACTTTTGAAGTCATATCATAAATTTTTAATAATGTTTAGAAGTGTTATGTTGTTTTCCGGTTACTAGATTACTTACCGAAGAACAGAAAAACCGTTGAATAGTTCATGATTTCTGCTGAGGGTGTCACACAAGAAGCTTTCACACAACCACTGGAATAGTAGTCGGGTGGGGCTGCTTGAAAGTGAGAATGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>500 383 82 35</canonical_bands>
                <polymorphic_bands>535 383 82</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 281 218</canonical_bands>
                <polymorphic_bands>719 281</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>479 467 35 19</canonical_bands>
                <polymorphic_bands>514 467 19</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 279 218</canonical_bands>
                <polymorphic_bands>721 279</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>281 240 203 97 86 36 35 22</canonical_bands>
                <polymorphic_bands>281 240 238 97 86 36 22</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>498 467 35</canonical_bands>
                <polymorphic_bands>533 467</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTGGTCGGACCTAGTAGTATT</pcr_primer_p1>
		<pcr_primer_p2>TGATAATCGTACACTGAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTCTGGTCGGACCTAGTAGTATTCCAAAAAATTAATACTAGTAACATTTCAAATTTCAACTTCCGACCAAAATCTGACCATTAGCCGCTGTTCTTGGGCAAGTTCCTGCTAGAACCTGGCCGCACATTTTTAATCAAGTCCAATTTTGGTTTTTTGTTTGTGGTCACTTTTTCGTGATCTATCTGCTCAGGAATTGGTAATGGATCCACCGGACTGTGTATTGCAATTTTCAGTGTACGATTATCA</canonical_amplicon>
		<polymorphic_amplicon>TTCTGGTCGGACCTAGTAGTATTCCAAAAAATTAATACTAGTAACATTTCAAATTTCAACTTCCGACCAAAATCTGACCATTAGCCGCTGTTCTTGGGCAAGTTCCTGCTAGAACCTGGYCGCACATTTTTAATCAAGTCCAATTTTGGTTTTTTGTTTGTGGTCACTTTTTCGTGATCTATCTGCTCAGGAATTGGTAATGGATCCACCGGACTGTGTATTGCAATTTTCAGTGTACGATTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35888</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>161580</contig_pos>
        <strand>+</strand>
        <context>AAAATTACAG[C/T]TTTTTTTGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAACCGTTGATAATTAACAAAACGCCTTAAACGCTCCATAAAATTACAG</left_flank>
        <right_flank>TTTTTTTGTAACTTTTGAAGTCATATCATAAATTTTTAATAATGTTTAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGAAAATGTTAAAAAACAGAAAAAAAAATAGAATGAAGATTCCTCTAGAAGAATAGTTCCTATACTAGGGCTTCGCTGGCAAATTCTGGTCGGACCTAGTAGTATTCCAAAAAATTAATACTAGTAACATTTCAAATTTCAACTTCCGACCAAAATCTGACCATTAGCCGCTGTTCTTGGGCAAGTTCCTGCTAGAACCTGGCCGCACATTTTTAATCAAGTCCAATTTTGGTTTTTTGTTTGTGGTCACTTTTTCGTGATCTATCTGCTCAGGAATTGGTAATGGATCCACCGGACTGTGTATTGCAATTTTCAGTGTACGATTATCAGTATATAACGGCATTATGCCCCAGTAAAACATTAAAGTAACAACAGTCGGTTTCTAAAAAGAAAATGAAATGAGAGCTAAATCAACAATTGGACGTCTTCCTAGGATTCATGACTCTCAGAAACCGTTGATAATTAACAAAACGCCTTAAACGCTCCATAAAATTACAGTTTTTTTTGTAACTTTTGAAGTCATATCATAAATTTTTAATAATGTTTAGAAGTGTTATGTTGTTTTCCGGTTACTAGATTACTTACCGAAGAACAGAAAAACCGTTGAATAGTTCATGATTTCTGCTGAGGGTGTCACACAAGAAGCTTTCACACAACCACTGGAATAGTAGTCGGGTGGGGCTGCTTGAAAGTGAGAATGGATGAATCTCTTTTCGGAGCTGCCGAAAGATATATCTCTGCATTCAAGCCACGCCCACCTATCACATTTCCATTGGACCGCCCGTTTTCGAAAAGCTCCCGAAATGGTGACGAAATAATTAGGGGAAGTGGAGGCGTCGATGGGAAAAGTATCGGTTACTTGAAGAATGATTGAAGATAGAAAATAGGATGAGCTACTTTCGGCACGTCATTGCAAGAAGGGGACGTCATGAACAATTGCAAAGCAAACTTGAAAAGTGTTTGGATGGTACGGGGAAGGGTGTTAAGAAATGAACGATT</canonical>
            <polymorphic>CGGAAAATGTTAAAAAACAGAAAAAAAAATAGAATGAAGATTCCTCTAGAAGAATAGTTCCTATACTAGGGCTTCGCTGGCAAATTCTGGTCGGACCTAGTAGTATTCCAAAAAATTAATACTAGTAACATTTCAAATTTCAACTTCCGACCAAAATCTGACCATTAGCCGCTGTTCTTGGGCAAGTTCCTGCTAGAACCTGGCCGCACATTTTTAATCAAGTCCAATTTTGGTTTTTTGTTTGTGGTCACTTTTTCGTGATCTATCTGCTCAGGAATTGGTAATGGATCCACCGGACTGTGTATTGCAATTTTCAGTGTACGATTATCAGTATATAACGGCATTATGCCCCAGTAAAACATTAAAGTAACAACAGTCGGTTTCTAAAAAGAAAATGAAATGAGAGCTAAATCAACAATTGGACGTCTTCCTAGGATTCATGACTCTCAGAAACCGTTGATAATTAACAAAACGCCTTAAACGCTCCATAAAATTACAGYTTTTTTTGTAACTTTTGAAGTCATATCATAAATTTTTAATAATGTTTAGAAGTGTTATGTTGTTTTCCGGTTACTAGATTACTTACCGAAGAACAGAAAAACCGTTGAATAGTTCATGATTTCTGCTGAGGGTGTCACACAAGAAGCTTTCACACAACCACTGGAATAGTAGTCGGGTGGGGCTGCTTGAAAGTGAGAATGGATGAATCTCTTTTCGGAGCTGCCGAAAGATATATCTCTGCATTCAAGCCACGCCCACCTATCACATTTCCATTGGACCGCCCGTTTTCGAAAAGCTCCCGAAATGGTGACGAAATAATTAGGGGAAGTGGAGGCGTCGATGGGAAAAGTATCGGTTACTTGAAGAATGATTGAAGATAGAAAATAGGATGAGCTACTTTCGGCACGTCATTGCAAGAAGGGGACGTCATGAACAATTGCAAAGCAAACTTGAAAAGTGTTTGGATGGTACGGGGAAGGGTGTTAAGAAATGAACGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>397 299 105 80 76 43</canonical_bands>
                <polymorphic_bands>397 299 148 80 76</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAAAGAAAATGAAATGAGAGC</pcr_primer_p1>
		<pcr_primer_p2>CTCAGCAGAAATCATGAACTATT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TAAAAAGAAAATGAAATGAGAGCTAAATCAACAATTGGACGTCTTCCTAGGATTCATGACTCTCAGAAACCGTTGATAATTAACAAAACGCCTTAAACGCTCCATAAAATTACAGTTTTTTTTGTAACTTTTGAAGTCATATCATAAATTTTTAATAATGTTTAGAAGTGTTATGTTGTTTTCCGGTTACTAGATTACTTACCGAAGAACAGAAAAACCGTTGAATAGTTCATGATTTCTGCTGAG</canonical_amplicon>
		<polymorphic_amplicon>TAAAAAGAAAATGAAATGAGAGCTAAATCAACAATTGGACGTCTTCCTAGGATTCATGACTCTCAGAAACCGTTGATAATTAACAAAACGCCTTAAACGCTCCATAAAATTACAGYTTTTTTTGTAACTTTTGAAGTCATATCATAAATTTTTAATAATGTTTAGAAGTGTTATGTTGTTTTCCGGTTACTAGATTACTTACCGAAGAACAGAAAAACCGTTGAATAGTTCATGATTTCTGCTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35889</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>200255</contig_pos>
        <strand>+</strand>
        <context>AAAGTTTCAG[A/G]AAATGGTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGGCTTCTTCCATTGTCAATTTCTGGAAATTTTCTATGAAAAGTTTCAG</left_flank>
        <right_flank>AAATGGTTGATGATTTACCTTCTGCATATCACGTGGTTTTTTGAATCCCG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCAAACTACTGTTTCCTGATTTCAAATGTCAAGCTATGCCTTCGAAATTCCATTACAACAATTTCATTGAAATTGGAAATATTATTAGAGTTAGGAAATGAATCAATTAGTAGGTATAATCATAATTGGAAATTATTTGGATTTTGAATCCTCTCTTCAAACTTGATAATTGGAATTTTCAGAAACTCCCTTTGTCGCTTCTCAGGAATATCCAACCAGTTTTGCATTCTCCTTATTACATTCTTCTCATATCCCCAAACCGATTGCTCATTGTTATAAAGCATCCAGAATAGATTTTTCGTGATATTCAAAATATTGACTGCGATCCATTCCAATTTCAATTGATCATTTTCATCATTTGGATTGTGACATCTCAGATAATAATCAAAGTTCCATTCCAATTGGTATTGATCAAATGGGAAAAGAATTTCCTGGTCTAGTCGGTCCGTGGCTTCTTCCATTGTCAATTTCTGGAAATTTTCTATGAAAAGTTTCAGAAAATGGTTGATGATTTACCTTCTGCATATCACGTGGTTTTTTGAATCCCGACTTATATTTGAATGCATAATGATCCAGATAATTTAGATAATTAGGATCGAAGAGGGCTTGTACAGATGGCACTCGATAATTAAGAAACTTGTGATTCGTTCTTTTTACTTTTGGCACTTTCTGAGTTCTAATCTGAAATTATATGTCACCTCAAAAAAAGTTTTTTTAGCTATTTACTCACCACTGTCTTATTCTGATCTTCTTCTGAATGCTTATTTTTCGGTGGCCCTTCAAACCAAAAATTATAGTATGCAGCTGGCTTTTTGGAGACGGTGTTCACTTTTTTTGAGGATTTGCGTCGTGGTTTGCTTTGTAAGACTTCGGAAGAGCGCCAGGTTACTTGTGGGTTTGGAAGATTTTCCATGATTTTGCTGGAAAAATACATATAATAGAAAACGGGAGCAAAAGCGAACGTAGCATAAACTTCTGAAAACAATGAAGCGAGAAAA</canonical>
            <polymorphic>GTTCAAACTACTGTTTCCTGATTTCAAATGTCAAGCTATGCCTTCGAAATTCCATTACAACAATTTCATTGAAATTGGAAATATTATTAGAGTTAGGAAATGAATCAATTAGTAGGTATAATCATAATTGGAAATTATTTGGATTTTGAATCCTCTCTTCAAACTTGATAATTGGAATTTTCAGAAACTCCCTTTGTCGCTTCTCAGGAATATCCAACCAGTTTTGCATTCTCCTTATTACATTCTTCTCATATCCCCAAACCGATTGCTCATTGTTATAAAGCATCCAGAATAGATTTTTCGTGATATTCAAAATATTGACTGCGATCCATTCCAATTTCAATTGATCATTTTCATCATTTGGATTGTGACATCTCAGATAATAATCAAAGTTCCATTCCAATTGGTATTGATCAAATGGGAAAAGAATTTCCTGGTCTAGTCGGTCCGTGGCTTCTTCCATTGTCAATTTCTGGAAATTTTCTATGAAAAGTTTCAGRAAATGGTTGATGATTTACCTTCTGCATATCACGTGGTTTTTTGAATCCCGACTTATATTTGAATGCATAATGATCCAGATAATTTAGATAATTAGGATCGAAGAGGGCTTGTACAGATGGCACTCGATAATTAAGAAACTTGTGATTCGTTCTTTTTACTTTTGGCACTTTCTGAGTTCTAATCTGAAATTATATGTCACCTCAAAAAAAGTTTTTTTAGCTATTTACTCACCACTGTCTTATTCTGATCTTCTTCTGAATGCTTATTTTTCGGTGGCCCTTCAAACCAAAAATTATAGTATGCAGCTGGCTTTTTGGAGACGGTGTTCACTTTTTTTGAGGATTTGCGTCGTGGTTTGCTTTGTAAGACTTCGGAAGAGCGCCAGGTTACTTGTGGGTTTGGAAGATTTTCCATGATTTTGCTGGAAAAATACATATAATAGAAAACGGGAGCAAAAGCGAACGTAGCATAAACTTCTGAAAACAATGAAGCGAGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>195 183 175 120 117 105 61 21 12 11</canonical_bands>
                <polymorphic_bands>295 195 183 117 105 61 21 12 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATTGATCAAATGGGAAAAGA</pcr_primer_p1>
		<pcr_primer_p2>AAGAACGAATCACAAGTTTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTATTGATCAAATGGGAAAAGAATTTCCTGGTCTAGTCGGTCCGTGGCTTCTTCCATTGTCAATTTCTGGAAATTTTCTATGAAAAGTTTCAGAAAATGGTTGATGATTTACCTTCTGCATATCACGTGGTTTTTTGAATCCCGACTTATATTTGAATGCATAATGATCCAGATAATTTAGATAATTAGGATCGAAGAGGGCTTGTACAGATGGCACTCGATAATTAAGAAACTTGTGATTCGTTCTT</canonical_amplicon>
		<polymorphic_amplicon>GTATTGATCAAATGGGAAAAGAATTTCCTGGTCTAGTCGGTCCGTGGCTTCTTCCATTGTCAATTTCTGGAAATTTTCTATGAAAAGTTTCAGRAAATGGTTGATGATTTACCTTCTGCATATCACGTGGTTTTTTGAATCCCGACTTATATTTGAATGCATAATGATCCAGATAATTTAGATAATTAGGATCGAAGAGGGCTTGTACAGATGGCACTCGATAATTAAGAAACTTGTGATTCGTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35890</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>202805</contig_pos>
        <strand>+</strand>
        <context>TAGAGGCATT[G/T]GWTCAAATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATCATCCAAATATCGTATTTAAGCTGCAACAAAAGAAATGTAGAGGCATT</left_flank>
        <right_flank>GTTCAAATTTTATTTTGCTGCAACTTGTGTAAATCGCTGTGGAACCGGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACGCGTATGGATTTCTAGGTTGTGTATTTGGTCAATGTCGTAAACAGGAAAAATGGGAACTGGAATTCAATTATACGGTAGATTCTCAACAACAAAAAATATTTTCAAAAAAAATCTGCCAATTTTCAGATTGGTTTTTTTACACTAAAATCTGTCCTGATTGTTAGTTCTTTTTTATATGTTCCAATCGTGATCAGTATCAAAAAATTGTCCAATTTAAGAGTGGTACAAGAAACTCAACCCCAAAAGTACATAATTTGGCAAGCAATGATTACAATGATGGTAAAATCGGTGAGTTACATCGTATGTTGATATTGAGTTTTATATTAATTTCAGATATCACTTCCCGTTGCAACAGTTTATCTGTATTACGATAACCAGTACGAAATCGATATAACCCTCGTGATTCTATTTCTAATCATCACTGATATCATTCTGCTCCCACTCATCATCCAAATATCGTATTTAAGCTGCAACAAAAGAAATGTAGAGGCATTGGTTCAAATTTTATTTTGCTGCAACTTGTGTAAATCGCTGTGGAACCGGATACAGTTGAAAATTATGATTCAGTATGACTCCTAATGATTATGAAATTTAATGAAGATCCATTAAAAATCTCTAATTTTTTATCTCGTTTGCCGTGAAACCTGTAATAGAAGGGCTTCTTAACTTCTAATTTTGAGCCAGTTTTTGTCAGGTGACACATTTTTGATACCTTGCATGGAAATTGAAATAATTGAGCTAGAAATCAGAAGAGTGGTATTAACTTTTCAGATACCGTGTTTGTTTTTTAATGAAGTTTAACATCTTTAAACTGTTTCAAACGGATGAAGAATTTTTTATTTTGTAAAAAAACATTAGATTGCTGACCTCATTTCAACATTGAACATTTTGAAATTTCTGATTCCAGTGATCTCAAGTGAATTGAACTGTGAAAAAATTGAAAAACACATAACTTCTCTGATGACACATCTTTTCAATATTTGGACTTGCTCGAC</canonical>
            <polymorphic>CAACGCGTATGGATTTCTAGGTTGTGTATTTGGTCAATGTCGTAAACAGGAAAAATGGGAACTGGAATTCAATTATACGGTAGATTCTCAACAACAAAAAATATTTTCAAAAAAAATCTGCCAATTTTCAGATTGGTTTTTTTACACTAAAATCTGTCCTGATTGTTAGTTCTTTTTTATATGTTCCAATCGTGATCAGTATCAAAAAATTGTCCAATTTAAGAGTGGTACAAGAAACTCAACCCCAAAAGTACATAATTTGGCAAGCAATGATTACAATGATGGTAAAATCGGTGAGTTACATCGTATGTTGATATTGAGTTTTATATTAATTTCAGATATCACTTCCCGTTGCAACAGTTTATCTGTATTACGATAACCAGTACGAAATCGATATAACCCTCGTGATTCTATTTCTAATCATCACTGATATCATTCTGCTCCCACTCATCATCCAAATATCGTATTTAAGCTGCAACAAAAGAAATGTAGAGGCATTKGTTCAAATTTTATTTTGCTGCAACTTGTGTAAATCGCTGTGGAACCGGATACAGTTGAAAATTATGATTCAGTATGACTCCTAATGATTATGAAATTTAATGAAGATCCATTAAAAATCTCTAATTTTTTATCTCGTTTGCCGTGAAACCTGTAATAGAAGGGCTTCTTAACTTCTAATTTTGAGCCAGTTTTTGTCAGGTGACACATTTTTGATACCTTGCATGGAAATTGAAATAATTGAGCTAGAAATCAGAAGAGTGGTATTAACTTTTCAGATACCGTGTTTGTTTTTTAATGAAGTTTAACATCTTTAAACTGTTTCAAACGGATGAAGAATTTTTTATTTTGTAAAAAAACATTAGATTGCTGACCTCATTTCAACATTGAACATTTTGAAATTTCTGATTCCAGTGATCTCAAGTGAATTGAACTGTGAAAAAATTGAAAAACACATAACTTCTCTGATGACACATCTTTTCAATATTTGGACTTGCTCGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGTACGAAATCGATATAACC</pcr_primer_p1>
		<pcr_primer_p2>TTAGAGATTTTTAATGGATCTTCA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CCAGTACGAAATCGATATAACCCTCGTGATTCTATTTCTAATCATCACTGATATCATTCTGCTCCCACTCATCATCCAAATATCGTATTTAAGCTGCAACAAAAGAAATGTAGAGGCATTGGTTCAAATTTTATTTTGCTGCAACTTGTGTAAATCGCTGTGGAACCGGATACAGTTGAAAATTATGATTCAGTATGACTCCTAATGATTATGAAATTTAATGAAGATCCATTAAAAATCTCTAA</canonical_amplicon>
		<polymorphic_amplicon>CCAGTACGAAATCGATATAACCCTCGTGATTCTATTTCTAATCATCACTGATATCATTCTGCTCCCACTCATCATCCAAATATCGTATTTAAGCTGCAACAAAAGAAATGTAGAGGCATTKGTTCAAATTTTATTTTGCTGCAACTTGTGTAAATCGCTGTGGAACCGGATACAGTTGAAAATTATGATTCAGTATGACTCCTAATGATTATGAAATTTAATGAAGATCCATTAAAAATCTCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35891</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>202807</contig_pos>
        <strand>+</strand>
        <context>GAGGCATTKG[A/T]TCAAATTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATCCAAATATCGTATTTAAGCTGCAACAAAAGAAATGTAGAGGCATTGG</left_flank>
        <right_flank>TCAAATTTTATTTTGCTGCAACTTGTGTAAATCGCTGTGGAACCGGATAC</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGCGTATGGATTTCTAGGTTGTGTATTTGGTCAATGTCGTAAACAGGAAAAATGGGAACTGGAATTCAATTATACGGTAGATTCTCAACAACAAAAAATATTTTCAAAAAAAATCTGCCAATTTTCAGATTGGTTTTTTTACACTAAAATCTGTCCTGATTGTTAGTTCTTTTTTATATGTTCCAATCGTGATCAGTATCAAAAAATTGTCCAATTTAAGAGTGGTACAAGAAACTCAACCCCAAAAGTACATAATTTGGCAAGCAATGATTACAATGATGGTAAAATCGGTGAGTTACATCGTATGTTGATATTGAGTTTTATATTAATTTCAGATATCACTTCCCGTTGCAACAGTTTATCTGTATTACGATAACCAGTACGAAATCGATATAACCCTCGTGATTCTATTTCTAATCATCACTGATATCATTCTGCTCCCACTCATCATCCAAATATCGTATTTAAGCTGCAACAAAAGAAATGTAGAGGCATTGGTTCAAATTTTATTTTGCTGCAACTTGTGTAAATCGCTGTGGAACCGGATACAGTTGAAAATTATGATTCAGTATGACTCCTAATGATTATGAAATTTAATGAAGATCCATTAAAAATCTCTAATTTTTTATCTCGTTTGCCGTGAAACCTGTAATAGAAGGGCTTCTTAACTTCTAATTTTGAGCCAGTTTTTGTCAGGTGACACATTTTTGATACCTTGCATGGAAATTGAAATAATTGAGCTAGAAATCAGAAGAGTGGTATTAACTTTTCAGATACCGTGTTTGTTTTTTAATGAAGTTTAACATCTTTAAACTGTTTCAAACGGATGAAGAATTTTTTATTTTGTAAAAAAACATTAGATTGCTGACCTCATTTCAACATTGAACATTTTGAAATTTCTGATTCCAGTGATCTCAAGTGAATTGAACTGTGAAAAAATTGAAAAACACATAACTTCTCTGATGACACATCTTTTCAATATTTGGACTTGCTCGACCA</canonical>
            <polymorphic>ACGCGTATGGATTTCTAGGTTGTGTATTTGGTCAATGTCGTAAACAGGAAAAATGGGAACTGGAATTCAATTATACGGTAGATTCTCAACAACAAAAAATATTTTCAAAAAAAATCTGCCAATTTTCAGATTGGTTTTTTTACACTAAAATCTGTCCTGATTGTTAGTTCTTTTTTATATGTTCCAATCGTGATCAGTATCAAAAAATTGTCCAATTTAAGAGTGGTACAAGAAACTCAACCCCAAAAGTACATAATTTGGCAAGCAATGATTACAATGATGGTAAAATCGGTGAGTTACATCGTATGTTGATATTGAGTTTTATATTAATTTCAGATATCACTTCCCGTTGCAACAGTTTATCTGTATTACGATAACCAGTACGAAATCGATATAACCCTCGTGATTCTATTTCTAATCATCACTGATATCATTCTGCTCCCACTCATCATCCAAATATCGTATTTAAGCTGCAACAAAAGAAATGTAGAGGCATTGGWTCAAATTTTATTTTGCTGCAACTTGTGTAAATCGCTGTGGAACCGGATACAGTTGAAAATTATGATTCAGTATGACTCCTAATGATTATGAAATTTAATGAAGATCCATTAAAAATCTCTAATTTTTTATCTCGTTTGCCGTGAAACCTGTAATAGAAGGGCTTCTTAACTTCTAATTTTGAGCCAGTTTTTGTCAGGTGACACATTTTTGATACCTTGCATGGAAATTGAAATAATTGAGCTAGAAATCAGAAGAGTGGTATTAACTTTTCAGATACCGTGTTTGTTTTTTAATGAAGTTTAACATCTTTAAACTGTTTCAAACGGATGAAGAATTTTTTATTTTGTAAAAAAACATTAGATTGCTGACCTCATTTCAACATTGAACATTTTGAAATTTCTGATTCCAGTGATCTCAAGTGAATTGAACTGTGAAAAAATTGAAAAACACATAACTTCTCTGATGACACATCTTTTCAATATTTGGACTTGCTCGACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGTACGAAATCGATATAACC</pcr_primer_p1>
		<pcr_primer_p2>TTAGAGATTTTTAATGGATCTTCA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CCAGTACGAAATCGATATAACCCTCGTGATTCTATTTCTAATCATCACTGATATCATTCTGCTCCCACTCATCATCCAAATATCGTATTTAAGCTGCAACAAAAGAAATGTAGAGGCATTGGTTCAAATTTTATTTTGCTGCAACTTGTGTAAATCGCTGTGGAACCGGATACAGTTGAAAATTATGATTCAGTATGACTCCTAATGATTATGAAATTTAATGAAGATCCATTAAAAATCTCTAA</canonical_amplicon>
		<polymorphic_amplicon>CCAGTACGAAATCGATATAACCCTCGTGATTCTATTTCTAATCATCACTGATATCATTCTGCTCCCACTCATCATCCAAATATCGTATTTAAGCTGCAACAAAAGAAATGTAGAGGCATTGGWTCAAATTTTATTTTGCTGCAACTTGTGTAAATCGCTGTGGAACCGGATACAGTTGAAAATTATGATTCAGTATGACTCCTAATGATTATGAAATTTAATGAAGATCCATTAAAAATCTCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35892</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>202887</contig_pos>
        <strand>+</strand>
        <context>GTATGACTCY[C/T]AATGATTATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCGCTGTGGAACCGGATACAGTTGAAAATTATGATTCAGTATGACTCC</left_flank>
        <right_flank>AATGATTATGAAATTTAATGAAGATCCATTAAAAATCTCTAATTTTTTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTCTCAACAACAAAAAATATTTTCAAAAAAAATCTGCCAATTTTCAGATTGGTTTTTTTACACTAAAATCTGTCCTGATTGTTAGTTCTTTTTTATATGTTCCAATCGTGATCAGTATCAAAAAATTGTCCAATTTAAGAGTGGTACAAGAAACTCAACCCCAAAAGTACATAATTTGGCAAGCAATGATTACAATGATGGTAAAATCGGTGAGTTACATCGTATGTTGATATTGAGTTTTATATTAATTTCAGATATCACTTCCCGTTGCAACAGTTTATCTGTATTACGATAACCAGTACGAAATCGATATAACCCTCGTGATTCTATTTCTAATCATCACTGATATCATTCTGCTCCCACTCATCATCCAAATATCGTATTTAAGCTGCAACAAAAGAAATGTAGAGGCATTGGTTCAAATTTTATTTTGCTGCAACTTGTGTAAATCGCTGTGGAACCGGATACAGTTGAAAATTATGATTCAGTATGACTCCTAATGATTATGAAATTTAATGAAGATCCATTAAAAATCTCTAATTTTTTATCTCGTTTGCCGTGAAACCTGTAATAGAAGGGCTTCTTAACTTCTAATTTTGAGCCAGTTTTTGTCAGGTGACACATTTTTGATACCTTGCATGGAAATTGAAATAATTGAGCTAGAAATCAGAAGAGTGGTATTAACTTTTCAGATACCGTGTTTGTTTTTTAATGAAGTTTAACATCTTTAAACTGTTTCAAACGGATGAAGAATTTTTTATTTTGTAAAAAAACATTAGATTGCTGACCTCATTTCAACATTGAACATTTTGAAATTTCTGATTCCAGTGATCTCAAGTGAATTGAACTGTGAAAAAATTGAAAAACACATAACTTCTCTGATGACACATCTTTTCAATATTTGGACTTGCTCGACCAAAAAGTTTTTGCTTTTCGATTTCCATTAAAAAGTTCTAAAAAAATTGTTATTTTATCTCATAAAAGAAGCCTTTTCCAAT</canonical>
            <polymorphic>GATTCTCAACAACAAAAAATATTTTCAAAAAAAATCTGCCAATTTTCAGATTGGTTTTTTTACACTAAAATCTGTCCTGATTGTTAGTTCTTTTTTATATGTTCCAATCGTGATCAGTATCAAAAAATTGTCCAATTTAAGAGTGGTACAAGAAACTCAACCCCAAAAGTACATAATTTGGCAAGCAATGATTACAATGATGGTAAAATCGGTGAGTTACATCGTATGTTGATATTGAGTTTTATATTAATTTCAGATATCACTTCCCGTTGCAACAGTTTATCTGTATTACGATAACCAGTACGAAATCGATATAACCCTCGTGATTCTATTTCTAATCATCACTGATATCATTCTGCTCCCACTCATCATCCAAATATCGTATTTAAGCTGCAACAAAAGAAATGTAGAGGCATTGGTTCAAATTTTATTTTGCTGCAACTTGTGTAAATCGCTGTGGAACCGGATACAGTTGAAAATTATGATTCAGTATGACTCCYAATGATTATGAAATTTAATGAAGATCCATTAAAAATCTCTAATTTTTTATCTCGTTTGCCGTGAAACCTGTAATAGAAGGGCTTCTTAACTTCTAATTTTGAGCCAGTTTTTGTCAGGTGACACATTTTTGATACCTTGCATGGAAATTGAAATAATTGAGCTAGAAATCAGAAGAGTGGTATTAACTTTTCAGATACCGTGTTTGTTTTTTAATGAAGTTTAACATCTTTAAACTGTTTCAAACGGATGAAGAATTTTTTATTTTGTAAAAAAACATTAGATTGCTGACCTCATTTCAACATTGAACATTTTGAAATTTCTGATTCCAGTGATCTCAAGTGAATTGAACTGTGAAAAAATTGAAAAACACATAACTTCTCTGATGACACATCTTTTCAATATTTGGACTTGCTCGACCAAAAAGTTTTTGCTTTTCGATTTCCATTAAAAAGTTCTAAAAAAATTGTTATTTTATCTCATAAAAGAAGCCTTTTCCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTGCTGCAACTTGTGTAA</pcr_primer_p1>
		<pcr_primer_p2>CACTCTTCTGATTTCTAGCTCAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATTTTGCTGCAACTTGTGTAAATCGCTGTGGAACCGGATACAGTTGAAAATTATGATTCAGTATGACTCCTAATGATTATGAAATTTAATGAAGATCCATTAAAAATCTCTAATTTTTTATCTCGTTTGCCGTGAAACCTGTAATAGAAGGGCTTCTTAACTTCTAATTTTGAGCCAGTTTTTGTCAGGTGACACATTTTTGATACCTTGCATGGAAATTGAAATAATTGAGCTAGAAATCAGAAGAGTG</canonical_amplicon>
		<polymorphic_amplicon>TATTTTGCTGCAACTTGTGTAAATCGCTGTGGAACCGGATACAGTTGAAAATTATGATTCAGTATGACTCCYAATGATTATGAAATTTAATGAAGATCCATTAAAAATCTCTAATTTTTTATCTCGTTTGCCGTGAAACCTGTAATAGAAGGGCTTCTTAACTTCTAATTTTGAGCCAGTTTTTGTCAGGTGACACATTTTTGATACCTTGCATGGAAATTGAAATAATTGAGCTAGAAATCAGAAGAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35893</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>206523</contig_pos>
        <strand></strand>
        <context>aatattttgt[C/T]agttaatcac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAAGCGGTCAATTAACAAAATATTTATCATCATTTCAAAAATATTTTGT</left_flank>
        <right_flank>AGTTAATCACTTTTCGATATCTTTCACGGGAAATGCGGTAGTTGAGCTCA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCTTCTTCCTCAAACTCAATAATTCTAGAATTCTTCGAGTTCATTGTTTCCAGGGACATGATGCACCACACTGACAGAAATCTATTGAAAGTTAGGGGTAATCGGGTAGAAGTGATTGAAATAAGTGCTGATAAGAAAACTCAATTTCAGCAATCAGAATGAGAGAAGAGCTATTTGTCAGTTGTGTTAATCTGAAGTCACATTTTGATTATTGGAAATGTATGACTTTTTTATGTTCTTTTCTATTAATTTATTAAACAACGAATGCATGTTTTTTCTTGTTCCACGGACAAGCCAACGAACCCATTCATATCTAGTGGATGCTTATTTGCCGACTCTGCCTTGTCAATTGTAAGAAAAAAGTTCAAGTTATCGTGTTCCTTCCTAAAAGTCCACTCAAAGCGTTAATTGTGAACTCATATATCTCATTTCTTGTGAGAGATATCACAAAGCGGTCAATTAACAAAATATTTATCATCATTTCAAAAATATTTTGTCAGTTAATCACTTTTCGATATCTTTCACGGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACCGTGAGCTTCTATTGGAGGAAAACCGTACTTTATTTTCTTGCATTTCCGAGAGGCAAACGTTTTCCTCTGTCTCTGAAAAAGTCCATAAAGGCGATTACCAGCAGAATTTTTTTCTAATATCCATAACTCAATTTTGCTATTATTTTGAAAAAACAACATTATGTTTACTGCATTTGCAGAATCAGCATTCTACAATACTGACTCATCAAAAAACCTATCGGTTTGATGTTTGCGCTTCTTAATATACGTTTATTTACATTGTACCTCTCTCCGTACCGACTCTCTATCATTCGTTGAGTTTTCGAATTGGAACTCACTTCATTTCGAAAAAGTTTTTTCATGTGGCCATTTTCTCTTTTTTCAGCTTCTTCGATGTCACAGAAGAAGGAAACAAATATCAGCGTTGATCCCTTCACGGGTCAGGATGTCTTGAAA</canonical>
            <polymorphic>TCTCTTCTTCCTCAAACTCAATAATTCTAGAATTCTTCGAGTTCATTGTTTCCAGGGACATGATGCACCACACTGACAGAAATCTATTGAAAGTTAGGGGTAATCGGGTAGAAGTGATTGAAATAAGTGCTGATAAGAAAACTCAATTTCAGCAATCAGAATGAGAGAAGAGCTATTTGTCAGTTGTGTTAATCTGAAGTCACATTTTGATTATTGGAAATGTATGACTTTTTTATGTTCTTTTCTATTAATTTATTAAACAACGAATGCATGTTTTTTCTTGTTCCACGGACAAGCCAACGAACCCATTCATATCTAGTGGATGCTTATTTGCCGACTCTGCCTTGTCAATTGTAAGAAAAAAGTTCAAGTTATCGTGTTCCTTCCTAAAAGTCCACTCAAAGCGTTAATTGTGAACTCATATATCTCATTTCTTGTGAGAGATATCACAAAGCGGTCAATTAACAAAATATTTATCATCATTTCAAAAATATTTTGTYAGTTAATCACTTTTCGATATCTTTCACGGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACCGTGAGCTTCTATTGGAGGAAAACCGTACTTTATTTTCTTGCATTTCCGAGAGGCAAACGTTTTCCTCTGTCTCTGAAAAAGTCCATAAAGGCGATTACCAGCAGAATTTTTTTCTAATATCCATAACTCAATTTTGCTATTATTTTGAAAAAACAACATTATGTTTACTGCATTTGCAGAATCAGCATTCTACAATACTGACTCATCAAAAAACCTATCGGTTTGATGTTTGCGCTTCTTAATATACGTTTATTTACATTGTACCTCTCTCCGTACCGACTCTCTATCATTCGTTGAGTTTTCGAATTGGAACTCACTTCATTTCGAAAAAGTTTTTTCATGTGGCCATTTTCTCTTTTTTCAGCTTCTTCGATGTCACAGAAGAAGGAAACAAATATCAGCGTTGATCCCTTCACGGGTCAGGATGTCTTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTATCGTGTTCCTTCCTAAA</pcr_primer_p1>
		<pcr_primer_p2>CGGAAATGCAAGAAAATAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAGTTATCGTGTTCCTTCCTAAAAGTCCACTCAAAGCGTTAATTGTGAACTCATATATCTCATTTCTTGTGAGAGATATCACAAAGCGGTCAATTAACAAAATATTTATCATCATTTCAAAAATATTTTGTCAGTTAATCACTTTTCGATATCTTTCACGGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACCGTGAGCTTCTATTGGAGGAAAACCGTACTTTATTTTCTTGCATTTCCG</canonical_amplicon>
		<polymorphic_amplicon>AAGTTATCGTGTTCCTTCCTAAAAGTCCACTCAAAGCGTTAATTGTGAACTCATATATCTCATTTCTTGTGAGAGATATCACAAAGCGGTCAATTAACAAAATATTTATCATCATTTCAAAAATATTTTGTYAGTTAATCACTTTTCGATATCTTTCACGGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACCGTGAGCTTCTATTGGAGGAAAACCGTACTTTATTTTCTTGCATTTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35894</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>206551</contig_pos>
        <strand></strand>
        <context>tatctttcac[G/A]ggaaatgcgg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CATCATTTCAAAAATATTTTGTCAGTTAATCACTTTTCGATATCTTTCAC</left_flank>
        <right_flank>GGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACCGTGAGCTTCTATT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATTCTTCGAGTTCATTGTTTCCAGGGACATGATGCACCACACTGACAGAAATCTATTGAAAGTTAGGGGTAATCGGGTAGAAGTGATTGAAATAAGTGCTGATAAGAAAACTCAATTTCAGCAATCAGAATGAGAGAAGAGCTATTTGTCAGTTGTGTTAATCTGAAGTCACATTTTGATTATTGGAAATGTATGACTTTTTTATGTTCTTTTCTATTAATTTATTAAACAACGAATGCATGTTTTTTCTTGTTCCACGGACAAGCCAACGAACCCATTCATATCTAGTGGATGCTTATTTGCCGACTCTGCCTTGTCAATTGTAAGAAAAAAGTTCAAGTTATCGTGTTCCTTCCTAAAAGTCCACTCAAAGCGTTAATTGTGAACTCATATATCTCATTTCTTGTGAGAGATATCACAAAGCGGTCAATTAACAAAATATTTATCATCATTTCAAAAATATTTTGTCAGTTAATCACTTTTCGATATCTTTCACGGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACCGTGAGCTTCTATTGGAGGAAAACCGTACTTTATTTTCTTGCATTTCCGAGAGGCAAACGTTTTCCTCTGTCTCTGAAAAAGTCCATAAAGGCGATTACCAGCAGAATTTTTTTCTAATATCCATAACTCAATTTTGCTATTATTTTGAAAAAACAACATTATGTTTACTGCATTTGCAGAATCAGCATTCTACAATACTGACTCATCAAAAAACCTATCGGTTTGATGTTTGCGCTTCTTAATATACGTTTATTTACATTGTACCTCTCTCCGTACCGACTCTCTATCATTCGTTGAGTTTTCGAATTGGAACTCACTTCATTTCGAAAAAGTTTTTTCATGTGGCCATTTTCTCTTTTTTCAGCTTCTTCGATGTCACAGAAGAAGGAAACAAATATCAGCGTTGATCCCTTCACGGGTCAGGATGTCTTGAAAACGAAGGCGTTCTCATGGAGAGGTCAGT</canonical>
            <polymorphic>AGAATTCTTCGAGTTCATTGTTTCCAGGGACATGATGCACCACACTGACAGAAATCTATTGAAAGTTAGGGGTAATCGGGTAGAAGTGATTGAAATAAGTGCTGATAAGAAAACTCAATTTCAGCAATCAGAATGAGAGAAGAGCTATTTGTCAGTTGTGTTAATCTGAAGTCACATTTTGATTATTGGAAATGTATGACTTTTTTATGTTCTTTTCTATTAATTTATTAAACAACGAATGCATGTTTTTTCTTGTTCCACGGACAAGCCAACGAACCCATTCATATCTAGTGGATGCTTATTTGCCGACTCTGCCTTGTCAATTGTAAGAAAAAAGTTCAAGTTATCGTGTTCCTTCCTAAAAGTCCACTCAAAGCGTTAATTGTGAACTCATATATCTCATTTCTTGTGAGAGATATCACAAAGCGGTCAATTAACAAAATATTTATCATCATTTCAAAAATATTTTGTCAGTTAATCACTTTTCGATATCTTTCACRGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACCGTGAGCTTCTATTGGAGGAAAACCGTACTTTATTTTCTTGCATTTCCGAGAGGCAAACGTTTTCCTCTGTCTCTGAAAAAGTCCATAAAGGCGATTACCAGCAGAATTTTTTTCTAATATCCATAACTCAATTTTGCTATTATTTTGAAAAAACAACATTATGTTTACTGCATTTGCAGAATCAGCATTCTACAATACTGACTCATCAAAAAACCTATCGGTTTGATGTTTGCGCTTCTTAATATACGTTTATTTACATTGTACCTCTCTCCGTACCGACTCTCTATCATTCGTTGAGTTTTCGAATTGGAACTCACTTCATTTCGAAAAAGTTTTTTCATGTGGCCATTTTCTCTTTTTTCAGCTTCTTCGATGTCACAGAAGAAGGAAACAAATATCAGCGTTGATCCCTTCACGGGTCAGGATGTCTTGAAAACGAAGGCGTTCTCATGGAGAGGTCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTATCGTGTTCCTTCCTAAA</pcr_primer_p1>
		<pcr_primer_p2>CGGAAATGCAAGAAAATAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAGTTATCGTGTTCCTTCCTAAAAGTCCACTCAAAGCGTTAATTGTGAACTCATATATCTCATTTCTTGTGAGAGATATCACAAAGCGGTCAATTAACAAAATATTTATCATCATTTCAAAAATATTTTGTCAGTTAATCACTTTTCGATATCTTTCACGGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACCGTGAGCTTCTATTGGAGGAAAACCGTACTTTATTTTCTTGCATTTCCG</canonical_amplicon>
		<polymorphic_amplicon>AAGTTATCGTGTTCCTTCCTAAAAGTCCACTCAAAGCGTTAATTGTGAACTCATATATCTCATTTCTTGTGAGAGATATCACAAAGCGGTCAATTAACAAAATATTTATCATCATTTCAAAAATATTTTGTCAGTTAATCACTTTTCGATATCTTTCACRGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACCGTGAGCTTCTATTGGAGGAAAACCGTACTTTATTTTCTTGCATTTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35895</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>207007</contig_pos>
        <strand>+</strand>
        <context>CCCTTCACGG[A/G]TCAGGATGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGATGTCACAGAAGAAGGAAACAAATATCAGCGTTGATCCCTTCACGG</left_flank>
        <right_flank>TCAGGATGTCTTGAAAACGAAGGCGTTCTCATGGAGAGGTCAGTGACAGA</right_flank>
        <qual_score>130</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAAAATATTTTGTCAGTTAATCACTTTTCGATATCTTTCACGGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACCGTGAGCTTCTATTGGAGGAAAACCGTACTTTATTTTCTTGCATTTCCGAGAGGCAAACGTTTTCCTCTGTCTCTGAAAAAGTCCATAAAGGCGATTACCAGCAGAATTTTTTTCTAATATCCATAACTCAATTTTGCTATTATTTTGAAAAAACAACATTATGTTTACTGCATTTGCAGAATCAGCATTCTACAATACTGACTCATCAAAAAACCTATCGGTTTGATGTTTGCGCTTCTTAATATACGTTTATTTACATTGTACCTCTCTCCGTACCGACTCTCTATCATTCGTTGAGTTTTCGAATTGGAACTCACTTCATTTCGAAAAAGTTTTTTCATGTGGCCATTTTCTCTTTTTTCAGCTTCTTCGATGTCACAGAAGAAGGAAACAAATATCAGCGTTGATCCCTTCACGGGTCAGGATGTCTTGAAAACGAAGGCGTTCTCATGGAGAGGTCAGTGACAGAAAATAACATGTGTCTCTTAAAAATAAACTGAAAATTCCAGAAATCCATCTTCAAATTTTTTTCCTGACTATTCCTCTTCCACTGTTTTTCATAGTCACCGGAATTCTCCAAATCAATGATTGTGACACGTCTCTGGCTATTTGGATGATCATCATGGGAATTATGATTGGAGTTGAATTAATCCATGTCTCTGTATTCTTCCACAGAGCGGCTGTTCAAAAGAATGAGATGGATTTGGAAGATGACGATATTTTCGATCACTATGAGCCACTCAAAGATCCAATCGTGAAACGCATAGTCAGAATCCACTCGGTCACTGGTCTTCTGTAAGTTTCTTCCCCAAAAAGGTTTTTATGAAACCGAAAACTTTTCAGGTCCTATTTCGGAGGAGTCAAATGCTATCTCATTCTTATTGGAAGTTGGTGGTGCAGTGGAATGGTCTTCTGGCCA</canonical>
            <polymorphic>TCAAAAATATTTTGTCAGTTAATCACTTTTCGATATCTTTCACGGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACCGTGAGCTTCTATTGGAGGAAAACCGTACTTTATTTTCTTGCATTTCCGAGAGGCAAACGTTTTCCTCTGTCTCTGAAAAAGTCCATAAAGGCGATTACCAGCAGAATTTTTTTCTAATATCCATAACTCAATTTTGCTATTATTTTGAAAAAACAACATTATGTTTACTGCATTTGCAGAATCAGCATTCTACAATACTGACTCATCAAAAAACCTATCGGTTTGATGTTTGCGCTTCTTAATATACGTTTATTTACATTGTACCTCTCTCCGTACCGACTCTCTATCATTCGTTGAGTTTTCGAATTGGAACTCACTTCATTTCGAAAAAGTTTTTTCATGTGGCCATTTTCTCTTTTTTCAGCTTCTTCGATGTCACAGAAGAAGGAAACAAATATCAGCGTTGATCCCTTCACGGRTCAGGATGTCTTGAAAACGAAGGCGTTCTCATGGAGAGGTCAGTGACAGAAAATAACATGTGTCTCTTAAAAATAAACTGAAAATTCCAGAAATCCATCTTCAAATTTTTTTCCTGACTATTCCTCTTCCACTGTTTTTCATAGTCACCGGAATTCTCCAAATCAATGATTGTGACACGTCTCTGGCTATTTGGATGATCATCATGGGAATTATGATTGGAGTTGAATTAATCCATGTCTCTGTATTCTTCCACAGAGCGGCTGTTCAAAAGAATGAGATGGATTTGGAAGATGACGATATTTTCGATCACTATGAGCCACTCAAAGATCCAATCGTGAAACGCATAGTCAGAATCCACTCGGTCACTGGTCTTCTGTAAGTTTCTTCCCCAAAAAGGTTTTTATGAAACCGAAAACTTTTCAGGTCCTATTTCGGAGGAGTCAAATGCTATCTCATTCTTATTGGAAGTTGGTGGTGCAGTGGAATGGTCTTCTGGCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>496 261 137 106</canonical_bands>
                <polymorphic_bands>757 137 106</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATGTTTGCGCTTCTTAATATAC</pcr_primer_p1>
		<pcr_primer_p2>TTATTTTCTGTCACTGACCTCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GATGTTTGCGCTTCTTAATATACGTTTATTTACATTGTACCTCTCTCCGTACCGACTCTCTATCATTCGTTGAGTTTTCGAATTGGAACTCACTTCATTTCGAAAAAGTTTTTTCATGTGGCCATTTTCTCTTTTTTCAGCTTCTTCGATGTCACAGAAGAAGGAAACAAATATCAGCGTTGATCCCTTCACGGGTCAGGATGTCTTGAAAACGAAGGCGTTCTCATGGAGAGGTCAGTGACAGAAAATAA</canonical_amplicon>
		<polymorphic_amplicon>GATGTTTGCGCTTCTTAATATACGTTTATTTACATTGTACCTCTCTCCGTACCGACTCTCTATCATTCGTTGAGTTTTCGAATTGGAACTCACTTCATTTCGAAAAAGTTTTTTCATGTGGCCATTTTCTCTTTTTTCAGCTTCTTCGATGTCACAGAAGAAGGAAACAAATATCAGCGTTGATCCCTTCACGGRTCAGGATGTCTTGAAAACGAAGGCGTTCTCATGGAGAGGTCAGTGACAGAAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35896</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>207024</contig_pos>
        <strand>+</strand>
        <context>TGTCTTGAAA[A/C]CGAAGGCGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGGAAACAAATATCAGCGTTGATCCCTTCACGGGTCAGGATGTCTTGAAA</left_flank>
        <right_flank>CGAAGGCGTTCTCATGGAGAGGTCAGTGACAGAAAATAACATGTGTCTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTAATCACTTTTCGATATCTTTCACGGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACCGTGAGCTTCTATTGGAGGAAAACCGTACTTTATTTTCTTGCATTTCCGAGAGGCAAACGTTTTCCTCTGTCTCTGAAAAAGTCCATAAAGGCGATTACCAGCAGAATTTTTTTCTAATATCCATAACTCAATTTTGCTATTATTTTGAAAAAACAACATTATGTTTACTGCATTTGCAGAATCAGCATTCTACAATACTGACTCATCAAAAAACCTATCGGTTTGATGTTTGCGCTTCTTAATATACGTTTATTTACATTGTACCTCTCTCCGTACCGACTCTCTATCATTCGTTGAGTTTTCGAATTGGAACTCACTTCATTTCGAAAAAGTTTTTTCATGTGGCCATTTTCTCTTTTTTCAGCTTCTTCGATGTCACAGAAGAAGGAAACAAATATCAGCGTTGATCCCTTCACGGGTCAGGATGTCTTGAAAACGAAGGCGTTCTCATGGAGAGGTCAGTGACAGAAAATAACATGTGTCTCTTAAAAATAAACTGAAAATTCCAGAAATCCATCTTCAAATTTTTTTCCTGACTATTCCTCTTCCACTGTTTTTCATAGTCACCGGAATTCTCCAAATCAATGATTGTGACACGTCTCTGGCTATTTGGATGATCATCATGGGAATTATGATTGGAGTTGAATTAATCCATGTCTCTGTATTCTTCCACAGAGCGGCTGTTCAAAAGAATGAGATGGATTTGGAAGATGACGATATTTTCGATCACTATGAGCCACTCAAAGATCCAATCGTGAAACGCATAGTCAGAATCCACTCGGTCACTGGTCTTCTGTAAGTTTCTTCCCCAAAAAGGTTTTTATGAAACCGAAAACTTTTCAGGTCCTATTTCGGAGGAGTCAAATGCTATCTCATTCTTATTGGAAGTTGGTGGTGCAGTGGAATGGTCTTCTGGCCAAGTCTTCTTATATCTTT</canonical>
            <polymorphic>GTTAATCACTTTTCGATATCTTTCACGGGAAATGCGGTAGTTGAGCTCAAAGTGAACGGTTACCGTGAGCTTCTATTGGAGGAAAACCGTACTTTATTTTCTTGCATTTCCGAGAGGCAAACGTTTTCCTCTGTCTCTGAAAAAGTCCATAAAGGCGATTACCAGCAGAATTTTTTTCTAATATCCATAACTCAATTTTGCTATTATTTTGAAAAAACAACATTATGTTTACTGCATTTGCAGAATCAGCATTCTACAATACTGACTCATCAAAAAACCTATCGGTTTGATGTTTGCGCTTCTTAATATACGTTTATTTACATTGTACCTCTCTCCGTACCGACTCTCTATCATTCGTTGAGTTTTCGAATTGGAACTCACTTCATTTCGAAAAAGTTTTTTCATGTGGCCATTTTCTCTTTTTTCAGCTTCTTCGATGTCACAGAAGAAGGAAACAAATATCAGCGTTGATCCCTTCACGGGTCAGGATGTCTTGAAAMCGAAGGCGTTCTCATGGAGAGGTCAGTGACAGAAAATAACATGTGTCTCTTAAAAATAAACTGAAAATTCCAGAAATCCATCTTCAAATTTTTTTCCTGACTATTCCTCTTCCACTGTTTTTCATAGTCACCGGAATTCTCCAAATCAATGATTGTGACACGTCTCTGGCTATTTGGATGATCATCATGGGAATTATGATTGGAGTTGAATTAATCCATGTCTCTGTATTCTTCCACAGAGCGGCTGTTCAAAAGAATGAGATGGATTTGGAAGATGACGATATTTTCGATCACTATGAGCCACTCAAAGATCCAATCGTGAAACGCATAGTCAGAATCCACTCGGTCACTGGTCTTCTGTAAGTTTCTTCCCCAAAAAGGTTTTTATGAAACCGAAAACTTTTCAGGTCCTATTTCGGAGGAGTCAAATGCTATCTCATTCTTATTGGAAGTTGGTGGTGCAGTGGAATGGTCTTCTGGCCAAGTCTTCTTATATCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCTATCATTCGTTGAGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTTGAAGATGGATTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTCTATCATTCGTTGAGTTTTCGAATTGGAACTCACTTCATTTCGAAAAAGTTTTTTCATGTGGCCATTTTCTCTTTTTTCAGCTTCTTCGATGTCACAGAAGAAGGAAACAAATATCAGCGTTGATCCCTTCACGGGTCAGGATGTCTTGAAAACGAAGGCGTTCTCATGGAGAGGTCAGTGACAGAAAATAACATGTGTCTCTTAAAAATAAACTGAAAATTCCAGAAATCCATCTTCAAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCTCTATCATTCGTTGAGTTTTCGAATTGGAACTCACTTCATTTCGAAAAAGTTTTTTCATGTGGCCATTTTCTCTTTTTTCAGCTTCTTCGATGTCACAGAAGAAGGAAACAAATATCAGCGTTGATCCCTTCACGGGTCAGGATGTCTTGAAAMCGAAGGCGTTCTCATGGAGAGGTCAGTGACAGAAAATAACATGTGTCTCTTAAAAATAAACTGAAAATTCCAGAAATCCATCTTCAAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35897</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>231018</contig_pos>
        <strand>+</strand>
        <context>CTAACAAATT[A/T]TTCTGACATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTCCGGGCCGACACGGTGATCCGGAGGACCGGTCCGGGCCTAACAAATT</left_flank>
        <right_flank>TTCTGACATGACCCGGTCTGTTTGGTCCGGGCCCTTACAAAGGTATTGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTAATGAATGTGAGAAAAGCGGAGAAGAGGTAATAAGTCCCACAAAAAATTTGAAGGAAAAAGTAATCACCTCGAATCGGAAGCCGGCATTTCTGAGAAGTCTGGGAAGGCGTTTGTTGATTGATTATTGGTGACACTTCCAGAGAATTTCTGAAAAAATTAAAGGTAACAGACCGGATGGGAAAAAAGTTTGTTGGAGAACTAATAACGAAACCTATTATTTTTGGATTGAATAAAAGATAGATGTGTTCCTGGGAGAATATGTTATGACAAGAAAAAAGTTGTTATTTCTGCTTGGTAAGAAACGGAAGTTTCAGTTCTATGAAATATTTTGAACTCCATTATTCAAAGAAGGATCAAAGAAACAAAAAGATGTAAACCATTAGTATTCCAAGGAAAGAAGAAGGTGAAGAAAATGAAGAGGTTCTTAGAATTTCATACATGTCAAATTCCGGGCCGACACGGTGATCCGGAGGACCGGTCCGGGCCTAACAAATTATTCTGACATGACCCGGTCTGTTTGGTCCGGGCCCTTACAAAGGTATTGAAACTTTGAATATTTTCGATAACTTCAAAACTTCAGAATTTGACCCGGACCGTGACAGGTATGTACTTGGTTGTCGGCGCCAATACTTGCACAAGTCTATGAGCCCATTACTCTATTTATTAGTTAAGACTTGTGGGAGACTTGAGCAAGACTTTTGGTAGTCTTGTCCTAGGCTTGCGGGAGGCTTGGCCAAGTCTTTTATTTTGTTGTTTTTGTTGTTATTGTTACGACACATAAAATAATGTGCTCAGAGACCTGTGCAAGTATTGGCGCCGACAGCCGAGTATGTAGAAATTGATAGAGACAATAAATAGTGGAAAATGAAACTTCGGGCAAAAATTTTCAAGTGTGTATAGTTCAGCATCAACTTTTACCGAAAAATTATACGAATTCTGTTTTCCCCATTTTTTTTTCCGAAAAACTAAAGACGATGTCATAATTGTTATGTAGCT</canonical>
            <polymorphic>AGTAATGAATGTGAGAAAAGCGGAGAAGAGGTAATAAGTCCCACAAAAAATTTGAAGGAAAAAGTAATCACCTCGAATCGGAAGCCGGCATTTCTGAGAAGTCTGGGAAGGCGTTTGTTGATTGATTATTGGTGACACTTCCAGAGAATTTCTGAAAAAATTAAAGGTAACAGACCGGATGGGAAAAAAGTTTGTTGGAGAACTAATAACGAAACCTATTATTTTTGGATTGAATAAAAGATAGATGTGTTCCTGGGAGAATATGTTATGACAAGAAAAAAGTTGTTATTTCTGCTTGGTAAGAAACGGAAGTTTCAGTTCTATGAAATATTTTGAACTCCATTATTCAAAGAAGGATCAAAGAAACAAAAAGATGTAAACCATTAGTATTCCAAGGAAAGAAGAAGGTGAAGAAAATGAAGAGGTTCTTAGAATTTCATACATGTCAAATTCCGGGCCGACACGGTGATCCGGAGGACCGGTCCGGGCCTAACAAATTWTTCTGACATGACCCGGTCTGTTTGGTCCGGGCCCTTACAAAGGTATTGAAACTTTGAATATTTTCGATAACTTCAAAACTTCAGAATTTGACCCGGACCGTGACAGGTATGTACTTGGTTGTCGGCGCCAATACTTGCACAAGTCTATGAGCCCATTACTCTATTTATTAGTTAAGACTTGTGGGAGACTTGAGCAAGACTTTTGGTAGTCTTGTCCTAGGCTTGCGGGAGGCTTGGCCAAGTCTTTTATTTTGTTGTTTTTGTTGTTATTGTTACGACACATAAAATAATGTGCTCAGAGACCTGTGCAAGTATTGGCGCCGACAGCCGAGTATGTAGAAATTGATAGAGACAATAAATAGTGGAAAATGAAACTTCGGGCAAAAATTTTCAAGTGTGTATAGTTCAGCATCAACTTTTACCGAAAAATTATACGAATTCTGTTTTCCCCATTTTTTTTTCCGAAAAACTAAAGACGATGTCATAATTGTTATGTAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCTTAGAATTTCATACATGTCAA</pcr_primer_p1>
		<pcr_primer_p2>TCATTTTCCACTATTTATTGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>448</pcr_amplicon_size>
		<canonical_amplicon>GTTCTTAGAATTTCATACATGTCAAATTCCGGGCCGACACGGTGATCCGGAGGACCGGTCCGGGCCTAACAAATTATTCTGACATGACCCGGTCTGTTTGGTCCGGGCCCTTACAAAGGTATTGAAACTTTGAATATTTTCGATAACTTCAAAACTTCAGAATTTGACCCGGACCGTGACAGGTATGTACTTGGTTGTCGGCGCCAATACTTGCACAAGTCTATGAGCCCATTACTCTATTTATTAGTTAAGACTTGTGGGAGACTTGAGCAAGACTTTTGGTAGTCTTGTCCTAGGCTTGCGGGAGGCTTGGCCAAGTCTTTTATTTTGTTGTTTTTGTTGTTATTGTTACGACACATAAAATAATGTGCTCAGAGACCTGTGCAAGTATTGGCGCCGACAGCCGAGTATGTAGAAATTGATAGAGACAATAAATAGTGGAAAATGA</canonical_amplicon>
		<polymorphic_amplicon>GTTCTTAGAATTTCATACATGTCAAATTCCGGGCCGACACGGTGATCCGGAGGACCGGTCCGGGCCTAACAAATTWTTCTGACATGACCCGGTCTGTTTGGTCCGGGCCCTTACAAAGGTATTGAAACTTTGAATATTTTCGATAACTTCAAAACTTCAGAATTTGACCCGGACCGTGACAGGTATGTACTTGGTTGTCGGCGCCAATACTTGCACAAGTCTATGAGCCCATTACTCTATTTATTAGTTAAGACTTGTGGGAGACTTGAGCAAGACTTTTGGTAGTCTTGTCCTAGGCTTGCGGGAGGCTTGGCCAAGTCTTTTATTTTGTTGTTTTTGTTGTTATTGTTACGACACATAAAATAATGTGCTCAGAGACCTGTGCAAGTATTGGCGCCGACAGCCGAGTATGTAGAAATTGATAGAGACAATAAATAGTGGAAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35898</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>231049</contig_pos>
        <strand>+</strand>
        <context>TTTGGTCCGG[A/G]CCCTTACAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTCCGGGCCTAACAAATTATTCTGACATGACCCGGTCTGTTTGGTCCGG</left_flank>
        <right_flank>CCCTTACAAAGGTATTGAAACTTTGAATATTTTCGATAACTTCAAAACTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATAAGTCCCACAAAAAATTTGAAGGAAAAAGTAATCACCTCGAATCGGAAGCCGGCATTTCTGAGAAGTCTGGGAAGGCGTTTGTTGATTGATTATTGGTGACACTTCCAGAGAATTTCTGAAAAAATTAAAGGTAACAGACCGGATGGGAAAAAAGTTTGTTGGAGAACTAATAACGAAACCTATTATTTTTGGATTGAATAAAAGATAGATGTGTTCCTGGGAGAATATGTTATGACAAGAAAAAAGTTGTTATTTCTGCTTGGTAAGAAACGGAAGTTTCAGTTCTATGAAATATTTTGAACTCCATTATTCAAAGAAGGATCAAAGAAACAAAAAGATGTAAACCATTAGTATTCCAAGGAAAGAAGAAGGTGAAGAAAATGAAGAGGTTCTTAGAATTTCATACATGTCAAATTCCGGGCCGACACGGTGATCCGGAGGACCGGTCCGGGCCTAACAAATTATTCTGACATGACCCGGTCTGTTTGGTCCGGGCCCTTACAAAGGTATTGAAACTTTGAATATTTTCGATAACTTCAAAACTTCAGAATTTGACCCGGACCGTGACAGGTATGTACTTGGTTGTCGGCGCCAATACTTGCACAAGTCTATGAGCCCATTACTCTATTTATTAGTTAAGACTTGTGGGAGACTTGAGCAAGACTTTTGGTAGTCTTGTCCTAGGCTTGCGGGAGGCTTGGCCAAGTCTTTTATTTTGTTGTTTTTGTTGTTATTGTTACGACACATAAAATAATGTGCTCAGAGACCTGTGCAAGTATTGGCGCCGACAGCCGAGTATGTAGAAATTGATAGAGACAATAAATAGTGGAAAATGAAACTTCGGGCAAAAATTTTCAAGTGTGTATAGTTCAGCATCAACTTTTACCGAAAAATTATACGAATTCTGTTTTCCCCATTTTTTTTTCCGAAAAACTAAAGACGATGTCATAATTGTTATGTAGCTACTTTATTTTTCTCTCTAGCCCCAGCCCTTC</canonical>
            <polymorphic>TAATAAGTCCCACAAAAAATTTGAAGGAAAAAGTAATCACCTCGAATCGGAAGCCGGCATTTCTGAGAAGTCTGGGAAGGCGTTTGTTGATTGATTATTGGTGACACTTCCAGAGAATTTCTGAAAAAATTAAAGGTAACAGACCGGATGGGAAAAAAGTTTGTTGGAGAACTAATAACGAAACCTATTATTTTTGGATTGAATAAAAGATAGATGTGTTCCTGGGAGAATATGTTATGACAAGAAAAAAGTTGTTATTTCTGCTTGGTAAGAAACGGAAGTTTCAGTTCTATGAAATATTTTGAACTCCATTATTCAAAGAAGGATCAAAGAAACAAAAAGATGTAAACCATTAGTATTCCAAGGAAAGAAGAAGGTGAAGAAAATGAAGAGGTTCTTAGAATTTCATACATGTCAAATTCCGGGCCGACACGGTGATCCGGAGGACCGGTCCGGGCCTAACAAATTATTCTGACATGACCCGGTCTGTTTGGTCCGGRCCCTTACAAAGGTATTGAAACTTTGAATATTTTCGATAACTTCAAAACTTCAGAATTTGACCCGGACCGTGACAGGTATGTACTTGGTTGTCGGCGCCAATACTTGCACAAGTCTATGAGCCCATTACTCTATTTATTAGTTAAGACTTGTGGGAGACTTGAGCAAGACTTTTGGTAGTCTTGTCCTAGGCTTGCGGGAGGCTTGGCCAAGTCTTTTATTTTGTTGTTTTTGTTGTTATTGTTACGACACATAAAATAATGTGCTCAGAGACCTGTGCAAGTATTGGCGCCGACAGCCGAGTATGTAGAAATTGATAGAGACAATAAATAGTGGAAAATGAAACTTCGGGCAAAAATTTTCAAGTGTGTATAGTTCAGCATCAACTTTTACCGAAAAATTATACGAATTCTGTTTTCCCCATTTTTTTTTCCGAAAAACTAAAGACGATGTCATAATTGTTATGTAGCTACTTTATTTTTCTCTCTAGCCCCAGCCCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGGCCC</site>
                <isoschizomers>
                    <enzyme>ApaI</enzyme>
                    <enzyme>Bsp120I</enzyme>
                    <enzyme>PspOMI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>438 423 65 31 28 15</canonical_bands>
                <polymorphic_bands>438 423 80 31 28</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>502 378 120</canonical_bands>
                <polymorphic_bands>622 378</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>438 222 201 65 31 28 15</canonical_bands>
                <polymorphic_bands>438 222 201 80 31 28</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>502 235 143 120</canonical_bands>
                <polymorphic_bands>622 235 143</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>426 294 206 43 31</canonical_bands>
                <polymorphic_bands>426 294 249 31</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>373 171 120 90 70 53 43 31 21 11 6 6 5</canonical_bands>
                <polymorphic_bands>373 171 163 90 70 53 31 21 11 6 6 5</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>433 427 66 38 21 5 5 5</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCTTAGAATTTCATACATGTCAA</pcr_primer_p1>
		<pcr_primer_p2>TCATTTTCCACTATTTATTGTCTC</pcr_primer_p2>
		<pcr_amplicon_size>448</pcr_amplicon_size>
		<canonical_amplicon>GTTCTTAGAATTTCATACATGTCAAATTCCGGGCCGACACGGTGATCCGGAGGACCGGTCCGGGCCTAACAAATTATTCTGACATGACCCGGTCTGTTTGGTCCGGGCCCTTACAAAGGTATTGAAACTTTGAATATTTTCGATAACTTCAAAACTTCAGAATTTGACCCGGACCGTGACAGGTATGTACTTGGTTGTCGGCGCCAATACTTGCACAAGTCTATGAGCCCATTACTCTATTTATTAGTTAAGACTTGTGGGAGACTTGAGCAAGACTTTTGGTAGTCTTGTCCTAGGCTTGCGGGAGGCTTGGCCAAGTCTTTTATTTTGTTGTTTTTGTTGTTATTGTTACGACACATAAAATAATGTGCTCAGAGACCTGTGCAAGTATTGGCGCCGACAGCCGAGTATGTAGAAATTGATAGAGACAATAAATAGTGGAAAATGA</canonical_amplicon>
		<polymorphic_amplicon>GTTCTTAGAATTTCATACATGTCAAATTCCGGGCCGACACGGTGATCCGGAGGACCGGTCCGGGCCTAACAAATTATTCTGACATGACCCGGTCTGTTTGGTCCGGRCCCTTACAAAGGTATTGAAACTTTGAATATTTTCGATAACTTCAAAACTTCAGAATTTGACCCGGACCGTGACAGGTATGTACTTGGTTGTCGGCGCCAATACTTGCACAAGTCTATGAGCCCATTACTCTATTTATTAGTTAAGACTTGTGGGAGACTTGAGCAAGACTTTTGGTAGTCTTGTCCTAGGCTTGCGGGAGGCTTGGCCAAGTCTTTTATTTTGTTGTTTTTGTTGTTATTGTTACGACACATAAAATAATGTGCTCAGAGACCTGTGCAAGTATTGGCGCCGACAGCCGAGTATGTAGAAATTGATAGAGACAATAAATAGTGGAAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35899</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>233139</contig_pos>
        <strand>+</strand>
        <context>GTTGAGAAAA[A/C]ATTTAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCGGCTCAAAAACCCATTTTCAGAGCTAGAGCTTAAATAAGTTGAGAAAA</left_flank>
        <right_flank>ATTTAAAAATTCGGATCAATAATTCTTAACCTCGGTTTAAATACTCAGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTAAAACAAAGAGCGAATGAAACAAACACAAAATGAAGCCTTACAATTTCATTTTTACGAATTTCGGATTTTCTGAACAAAAAATCCGAAAAGAGAGAAAGAGAGAATGTGTCATCCATAAGGACCCGCCTCCTCTTTTCTCTTACACTAATTGCAGGGTTTTTCCAGATTGAAAGAGAGGAAAAATAGGGGAGACGTAGAAACCAGAGACTCGTCTTCGAAGGAAAATTATGATCAAAGGGACATATAAGTTCTGGCTCAAGTTTGAGAAGACACGTCATCATCTGTGAACTTTGATTCTGTTAGAAGGATAAAGGTTTTCAAGGCTTTATTTCAGACCAAGAAAAAAAGTTTGTCTAAAATTGGAAACACCTGTTTGGTTTGTGAATCATTCCATTTTCATTTCTGGGAACTAAAAATTGTGGATCAATAATCTTTACTATCAAAATCGGCTCAAAAACCCATTTTCAGAGCTAGAGCTTAAATAAGTTGAGAAAAAATTTAAAAATTCGGATCAATAATTCTTAACCTCGGTTTAAATACTCAGATATTAAATGACTTGGGAAAACTTTTGTTTTTGAAAGAAAAATATAATTATGATAATCGTAGGCGTCCTGACAGGAAAAATATTTTGATGTAAGTATTCAAAAAACCAACAAAAAAGTTGAGTAGGATCTTTTGAAACTTCCTTGATCAGGAAAACAGAAAAGTGTATTTTAATACCAAATTAAAATACTCATGCAACTGTACATAAACTTGATCAGAACACATAACTTTATATCTGATTTTGAAAAATAGAAGGTTTACTTCTTTGAAAAAAGTTAGCAAGAAGGATTTGCACCATGAACTGAACCCAAACTCCACCTACATTTTGGATCTAAAAACTCCACCTACATTTAGAACGGAAAATCACGTAACCTGCCGACTAACTCTACTAAGCTGAATAGTGACTAACGAAGTTACCAAAGTCTAATTTTCTTGGAAATCTAAAATCACCCC</canonical>
            <polymorphic>TCTAAAACAAAGAGCGAATGAAACAAACACAAAATGAAGCCTTACAATTTCATTTTTACGAATTTCGGATTTTCTGAACAAAAAATCCGAAAAGAGAGAAAGAGAGAATGTGTCATCCATAAGGACCCGCCTCCTCTTTTCTCTTACACTAATTGCAGGGTTTTTCCAGATTGAAAGAGAGGAAAAATAGGGGAGACGTAGAAACCAGAGACTCGTCTTCGAAGGAAAATTATGATCAAAGGGACATATAAGTTCTGGCTCAAGTTTGAGAAGACACGTCATCATCTGTGAACTTTGATTCTGTTAGAAGGATAAAGGTTTTCAAGGCTTTATTTCAGACCAAGAAAAAAAGTTTGTCTAAAATTGGAAACACCTGTTTGGTTTGTGAATCATTCCATTTTCATTTCTGGGAACTAAAAATTGTGGATCAATAATCTTTACTATCAAAATCGGCTCAAAAACCCATTTTCAGAGCTAGAGCTTAAATAAGTTGAGAAAAMATTTAAAAATTCGGATCAATAATTCTTAACCTCGGTTTAAATACTCAGATATTAAATGACTTGGGAAAACTTTTGTTTTTGAAAGAAAAATATAATTATGATAATCGTAGGCGTCCTGACAGGAAAAATATTTTGATGTAAGTATTCAAAAAACCAACAAAAAAGTTGAGTAGGATCTTTTGAAACTTCCTTGATCAGGAAAACAGAAAAGTGTATTTTAATACCAAATTAAAATACTCATGCAACTGTACATAAACTTGATCAGAACACATAACTTTATATCTGATTTTGAAAAATAGAAGGTTTACTTCTTTGAAAAAAGTTAGCAAGAAGGATTTGCACCATGAACTGAACCCAAACTCCACCTACATTTTGGATCTAAAAACTCCACCTACATTTAGAACGGAAAATCACGTAACCTGCCGACTAACTCTACTAAGCTGAATAGTGACTAACGAAGTTACCAAAGTCTAATTTTCTTGGAAATCTAAAATCACCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>493 439 60 8</canonical_bands>
                <polymorphic_bands>493 447 60</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>246 134 133 90 81 77 73 57 45 28 15 13 8</canonical_bands>
                <polymorphic_bands>246 134 133 90 89 77 73 57 45 28 15 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAAGGCTTTATTTCAGAC</pcr_primer_p1>
		<pcr_primer_p2>TTTCCCAAGTCATTTAATATCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAAGGCTTTATTTCAGACCAAGAAAAAAAGTTTGTCTAAAATTGGAAACACCTGTTTGGTTTGTGAATCATTCCATTTTCATTTCTGGGAACTAAAAATTGTGGATCAATAATCTTTACTATCAAAATCGGCTCAAAAACCCATTTTCAGAGCTAGAGCTTAAATAAGTTGAGAAAAAATTTAAAAATTCGGATCAATAATTCTTAACCTCGGTTTAAATACTCAGATATTAAATGACTTGGGAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAAGGCTTTATTTCAGACCAAGAAAAAAAGTTTGTCTAAAATTGGAAACACCTGTTTGGTTTGTGAATCATTCCATTTTCATTTCTGGGAACTAAAAATTGTGGATCAATAATCTTTACTATCAAAATCGGCTCAAAAACCCATTTTCAGAGCTAGAGCTTAAATAAGTTGAGAAAAMATTTAAAAATTCGGATCAATAATTCTTAACCTCGGTTTAAATACTCAGATATTAAATGACTTGGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35900</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>258898</contig_pos>
        <strand>+</strand>
        <context>TCTCTCAATT[C/T]CTTTTTCGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCATCAGAGAGCAGCTTGGAGAGCCACAACCCCACCACTTCTCTCAATT</left_flank>
        <right_flank>CTTTTTCGTTTTCTCTCTTTTTTCGTGTTTGTAGCTTGTGTGTATATGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATATATGATCTCAAAGTTAAAAATCAGAGAACCCTTCTAATACAGGAAATGCAAAATAAGAAAAAATGTAAAACCAAAAGTCTAGGTTAGGATTTCAAAATACTTGGGACCTAAAAAATTGCGTCATATGGATAGCATCGAGTAGCGCATTTGCATATATTGGAAAACAAAGAAAAAGTGATACATCAGATGTAACTTGACACCTTGAAGAAATCAATTTTCCATATAAACAAATAAGCCACGCCCCCTTTTGAAAAACCTATAAATTAAAACTCAAACAAGCTGACCCTCCTAGTCTAGAGATAAAGAGACGCAGGAAGTGAAAGGAAAGCCACAAAATGTGCGAATCATCTTTGAAATGTTCTCCTTCTCTCCCGGTGCCCACTCCCAGGCTTAGAACGTGGAGAGAGAGTGTGTGAAACGAAGAGAGTGCGCAGAGAGGGAAGAGTCATCAGAGAGCAGCTTGGAGAGCCACAACCCCACCACTTCTCTCAATTTCTTTTTCGTTTTCTCTCTTTTTTCGTGTTTGTAGCTTGTGTGTATATGAATAAGTTTATGAAGATTAGAACTCTCTCTATGAGGTCTCACTTTGTTATTTTTTTTGTAGCTGTTTTTGTTATGATTGCTTTTTTTTCTCTGTGATGGCCTAGGAATTTCTAGGTCATGGAGGGAAAACAGATATTTCAAATTTCAAACTGAAAACTTCTAGATTTTTTTTAATCTTTTTATGAACATCCGAATTTTTGATTCGAAATTTTTTAAAGTTCCTAAAACATTTAATTGAATTGTCTCCAACTTCTACAGTGATTATTTAGAATTTTTATATTTCAGTATCCGCTTCAAATTAGAAAAATATTATGTTTACCACTATTTAATTTTCACATGTTCGCAGAACTTTCTAGCTCGGAACACATGCTCAATCCACGTGGATTGCACATTCTGCCTCCAAAAATATAGATCCACATTGGCTTTGTCTGATCCTGTGACACTTTTTTCTA</canonical>
            <polymorphic>AGATATATGATCTCAAAGTTAAAAATCAGAGAACCCTTCTAATACAGGAAATGCAAAATAAGAAAAAATGTAAAACCAAAAGTCTAGGTTAGGATTTCAAAATACTTGGGACCTAAAAAATTGCGTCATATGGATAGCATCGAGTAGCGCATTTGCATATATTGGAAAACAAAGAAAAAGTGATACATCAGATGTAACTTGACACCTTGAAGAAATCAATTTTCCATATAAACAAATAAGCCACGCCCCCTTTTGAAAAACCTATAAATTAAAACTCAAACAAGCTGACCCTCCTAGTCTAGAGATAAAGAGACGCAGGAAGTGAAAGGAAAGCCACAAAATGTGCGAATCATCTTTGAAATGTTCTCCTTCTCTCCCGGTGCCCACTCCCAGGCTTAGAACGTGGAGAGAGAGTGTGTGAAACGAAGAGAGTGCGCAGAGAGGGAAGAGTCATCAGAGAGCAGCTTGGAGAGCCACAACCCCACCACTTCTCTCAATTYCTTTTTCGTTTTCTCTCTTTTTTCGTGTTTGTAGCTTGTGTGTATATGAATAAGTTTATGAAGATTAGAACTCTCTCTATGAGGTCTCACTTTGTTATTTTTTTTGTAGCTGTTTTTGTTATGATTGCTTTTTTTTCTCTGTGATGGCCTAGGAATTTCTAGGTCATGGAGGGAAAACAGATATTTCAAATTTCAAACTGAAAACTTCTAGATTTTTTTTAATCTTTTTATGAACATCCGAATTTTTGATTCGAAATTTTTTAAAGTTCCTAAAACATTTAATTGAATTGTCTCCAACTTCTACAGTGATTATTTAGAATTTTTATATTTCAGTATCCGCTTCAAATTAGAAAAATATTATGTTTACCACTATTTAATTTTCACATGTTCGCAGAACTTTCTAGCTCGGAACACATGCTCAATCCACGTGGATTGCACATTCTGCCTCCAAAAATATAGATCCACATTGGCTTTGTCTGATCCTGTGACACTTTTTTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCATCTTTGAAATGTTCTCCT</pcr_primer_p1>
		<pcr_primer_p2>AACAAAGTGAGACCTCATAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATCATCTTTGAAATGTTCTCCTTCTCTCCCGGTGCCCACTCCCAGGCTTAGAACGTGGAGAGAGAGTGTGTGAAACGAAGAGAGTGCGCAGAGAGGGAAGAGTCATCAGAGAGCAGCTTGGAGAGCCACAACCCCACCACTTCTCTCAATTTCTTTTTCGTTTTCTCTCTTTTTTCGTGTTTGTAGCTTGTGTGTATATGAATAAGTTTATGAAGATTAGAACTCTCTCTATGAGGTCTCACTTTGTT</canonical_amplicon>
		<polymorphic_amplicon>AATCATCTTTGAAATGTTCTCCTTCTCTCCCGGTGCCCACTCCCAGGCTTAGAACGTGGAGAGAGAGTGTGTGAAACGAAGAGAGTGCGCAGAGAGGGAAGAGTCATCAGAGAGCAGCTTGGAGAGCCACAACCCCACCACTTCTCTCAATTYCTTTTTCGTTTTCTCTCTTTTTTCGTGTTTGTAGCTTGTGTGTATATGAATAAGTTTATGAAGATTAGAACTCTCTCTATGAGGTCTCACTTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35904</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>317088</contig_pos>
        <strand></strand>
        <context>ttcagaaaaa[A/C]atatttgaag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGACGTTCCGAAAAAAAACGCCGTGCGGCAGGTCGTGGCTTCAGAAAAA</left_flank>
        <right_flank>ATATTTGAAGAAGCCGTGGCCGGCCCAGGCTAGCCGTGCGACTTCTCATG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCGTTGCAGCCTCTAACTCTCATATGTCCCATGATCCTCAGAACACCTGGGAAAGGTCCTATGTAACCTATTAACCATGTACGCTATCAACTAGTGTACCTTAAGGACTCAATATACCACATTTCGGGTGTCATTTTGTATACTGAGCAAAAAAAATGTAATGTCAAGGTTAGATCTCTGGATAGTACTTGAATGAAGGTCCTAGCAATTTTTGGATTACCCAAAATTTTCGTTCCGTGATTTTATTTTTCGTTCCGTGATTTTTTTTTGTTCCGTGATTTTTTGTTCCGTGATTTTTTTTTTCGTTCCTTGATTCTAGAAGAGTGCCTTTTTTCGCGCCGTTTTTTTTGGTCGCATGCCACAAATTCGTAAGACTCGGCTGTTCGTTTCAAAGCTTTCGTGTCGAGACCAAAGCCTGTGCGTTAGAGCGCATTAACAAGCATTTTACAAGACGTTCCGAAAAAAAACGCCGTGCGGCAGGTCGTGGCTTCAGAAAAAAATATTTGAAGAAGCCGTGGCCGGCCCAGGCTAGCCGTGCGACTTCTCATGGCTTTTCAAAAGAATCTTTTCATGAGAAACATAGTTTTTTTTGAAATGTAGGACAAAAAAATATAAATTCTTCAAACACGAATTGATTTTCACTTCACGCTTTTTTTAAAGGCTAGCCGCGGCTGGCCTCGGCTATCCGCGGATTTTCCCGGCTTTCACACAAAAGCCGCGGCCGGGCTCGGCCTCAAAAATCGAGCCGCGACTGGTCGTGGCCGCGGCCGGACGGCATTTTACACAGCCTTGAAAACAGTTACAATAAGCTCTCTGAGCAAATTTTTGACACAAAGACTGAGTAAGCTTTTGAATATAGTAGACATTGGCAAAGTTGATTAGAAAATTCGCCGATTTCGAAATCGATGTCTGAAGATTGTTCGGTTTTATGAAGACTTTTGAAATGTTCAAACAGAAAACTTGCAAATACATATAAATTTCAACTTATATTTTCTGTTT</canonical>
            <polymorphic>CTCGTTGCAGCCTCTAACTCTCATATGTCCCATGATCCTCAGAACACCTGGGAAAGGTCCTATGTAACCTATTAACCATGTACGCTATCAACTAGTGTACCTTAAGGACTCAATATACCACATTTCGGGTGTCATTTTGTATACTGAGCAAAAAAAATGTAATGTCAAGGTTAGATCTCTGGATAGTACTTGAATGAAGGTCCTAGCAATTTTTGGATTACCCAAAATTTTCGTTCCGTGATTTTATTTTTCGTTCCGTGATTTTTTTTTGTTCCGTGATTTTTTGTTCCGTGATTTTTTTTTTCGTTCCTTGATTCTAGAAGAGTGCCTTTTTTCGCGCCGTTTTTTTTGGTCGCATGCCACAAATTCGTAAGACTCGGCTGTTCGTTTCAAAGCTTTCGTGTCGAGACCAAAGCCTGTGCGTTAGAGCGCATTAACAAGCATTTTACAAGACGTTCCGAAAAAAAACGCCGTGCGGCAGGTCGTGGCTTCAGAAAAAMATATTTGAAGAAGCCGTGGCCGGCCCAGGCTAGCCGTGCGACTTCTCATGGCTTTTCAAAAGAATCTTTTCATGAGAAACATAGTTTTTTTTGAAATGTAGGACAAAAAAATATAAATTCTTCAAACACGAATTGATTTTCACTTCACGCTTTTTTTAAAGGCTAGCCGCGGCTGGCCTCGGCTATCCGCGGATTTTCCCGGCTTTCACACAAAAGCCGCGGCCGGGCTCGGCCTCAAAAATCGAGCCGCGACTGGTCGTGGCCGCGGCCGGACGGCATTTTACACAGCCTTGAAAACAGTTACAATAAGCTCTCTGAGCAAATTTTTGACACAAAGACTGAGTAAGCTTTTGAATATAGTAGACATTGGCAAAGTTGATTAGAAAATTCGCCGATTTCGAAATCGATGTCTGAAGATTGTTCGGTTTTATGAAGACTTTTGAAATGTTCAAACAGAAAACTTGCAAATACATATAAATTTCAACTTATATTTTCTGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCTTGATTCTAGAAGAGTGC</pcr_primer_p1>
		<pcr_primer_p2>GCTCAGAGAGCTTATTGTAACTG</pcr_primer_p2>
		<pcr_amplicon_size>514</pcr_amplicon_size>
		<canonical_amplicon>TTCCTTGATTCTAGAAGAGTGCCTTTTTTCGCGCCGTTTTTTTTGGTCGCATGCCACAAATTCGTAAGACTCGGCTGTTCGTTTCAAAGCTTTCGTGTCGAGACCAAAGCCTGTGCGTTAGAGCGCATTAACAAGCATTTTACAAGACGTTCCGAAAAAAAACGCCGTGCGGCAGGTCGTGGCTTCAGAAAAAAATATTTGAAGAAGCCGTGGCCGGCCCAGGCTAGCCGTGCGACTTCTCATGGCTTTTCAAAAGAATCTTTTCATGAGAAACATAGTTTTTTTTGAAATGTAGGACAAAAAAATATAAATTCTTCAAACACGAATTGATTTTCACTTCACGCTTTTTTTAAAGGCTAGCCGCGGCTGGCCTCGGCTATCCGCGGATTTTCCCGGCTTTCACACAAAAGCCGCGGCCGGGCTCGGCCTCAAAAATCGAGCCGCGACTGGTCGTGGCCGCGGCCGGACGGCATTTTACACAGCCTTGAAAACAGTTACAATAAGCTCTCTGAGC</canonical_amplicon>
		<polymorphic_amplicon>TTCCTTGATTCTAGAAGAGTGCCTTTTTTCGCGCCGTTTTTTTTGGTCGCATGCCACAAATTCGTAAGACTCGGCTGTTCGTTTCAAAGCTTTCGTGTCGAGACCAAAGCCTGTGCGTTAGAGCGCATTAACAAGCATTTTACAAGACGTTCCGAAAAAAAACGCCGTGCGGCAGGTCGTGGCTTCAGAAAAAMATATTTGAAGAAGCCGTGGCCGGCCCAGGCTAGCCGTGCGACTTCTCATGGCTTTTCAAAAGAATCTTTTCATGAGAAACATAGTTTTTTTTGAAATGTAGGACAAAAAAATATAAATTCTTCAAACACGAATTGATTTTCACTTCACGCTTTTTTTAAAGGCTAGCCGCGGCTGGCCTCGGCTATCCGCGGATTTTCCCGGCTTTCACACAAAAGCCGCGGCCGGGCTCGGCCTCAAAAATCGAGCCGCGACTGGTCGTGGCCGCGGCCGGACGGCATTTTACACAGCCTTGAAAACAGTTACAATAAGCTCTCTGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35905</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>317129</contig_pos>
        <strand></strand>
        <context>tagccgtgcg[A/G]cttctcatgg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAGAAAAAAATATTTGAAGAAGCCGTGGCCGGCCCAGGCTAGCCGTGCG</left_flank>
        <right_flank>CTTCTCATGGCTTTTCAAAAGAATCTTTTCATGAGAAACATAGTTTTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACACCTGGGAAAGGTCCTATGTAACCTATTAACCATGTACGCTATCAACTAGTGTACCTTAAGGACTCAATATACCACATTTCGGGTGTCATTTTGTATACTGAGCAAAAAAAATGTAATGTCAAGGTTAGATCTCTGGATAGTACTTGAATGAAGGTCCTAGCAATTTTTGGATTACCCAAAATTTTCGTTCCGTGATTTTATTTTTCGTTCCGTGATTTTTTTTTGTTCCGTGATTTTTTGTTCCGTGATTTTTTTTTTCGTTCCTTGATTCTAGAAGAGTGCCTTTTTTCGCGCCGTTTTTTTTGGTCGCATGCCACAAATTCGTAAGACTCGGCTGTTCGTTTCAAAGCTTTCGTGTCGAGACCAAAGCCTGTGCGTTAGAGCGCATTAACAAGCATTTTACAAGACGTTCCGAAAAAAAACGCCGTGCGGCAGGTCGTGGCTTCAGAAAAAAATATTTGAAGAAGCCGTGGCCGGCCCAGGCTAGCCGTGCGACTTCTCATGGCTTTTCAAAAGAATCTTTTCATGAGAAACATAGTTTTTTTTGAAATGTAGGACAAAAAAATATAAATTCTTCAAACACGAATTGATTTTCACTTCACGCTTTTTTTAAAGGCTAGCCGCGGCTGGCCTCGGCTATCCGCGGATTTTCCCGGCTTTCACACAAAAGCCGCGGCCGGGCTCGGCCTCAAAAATCGAGCCGCGACTGGTCGTGGCCGCGGCCGGACGGCATTTTACACAGCCTTGAAAACAGTTACAATAAGCTCTCTGAGCAAATTTTTGACACAAAGACTGAGTAAGCTTTTGAATATAGTAGACATTGGCAAAGTTGATTAGAAAATTCGCCGATTTCGAAATCGATGTCTGAAGATTGTTCGGTTTTATGAAGACTTTTGAAATGTTCAAACAGAAAACTTGCAAATACATATAAATTTCAACTTATATTTTCTGTTTCAAAGTGGTCCAATAATCTTTTCAAATAGAGAAAACAATTA</canonical>
            <polymorphic>GAACACCTGGGAAAGGTCCTATGTAACCTATTAACCATGTACGCTATCAACTAGTGTACCTTAAGGACTCAATATACCACATTTCGGGTGTCATTTTGTATACTGAGCAAAAAAAATGTAATGTCAAGGTTAGATCTCTGGATAGTACTTGAATGAAGGTCCTAGCAATTTTTGGATTACCCAAAATTTTCGTTCCGTGATTTTATTTTTCGTTCCGTGATTTTTTTTTGTTCCGTGATTTTTTGTTCCGTGATTTTTTTTTTCGTTCCTTGATTCTAGAAGAGTGCCTTTTTTCGCGCCGTTTTTTTTGGTCGCATGCCACAAATTCGTAAGACTCGGCTGTTCGTTTCAAAGCTTTCGTGTCGAGACCAAAGCCTGTGCGTTAGAGCGCATTAACAAGCATTTTACAAGACGTTCCGAAAAAAAACGCCGTGCGGCAGGTCGTGGCTTCAGAAAAAAATATTTGAAGAAGCCGTGGCCGGCCCAGGCTAGCCGTGCGRCTTCTCATGGCTTTTCAAAAGAATCTTTTCATGAGAAACATAGTTTTTTTTGAAATGTAGGACAAAAAAATATAAATTCTTCAAACACGAATTGATTTTCACTTCACGCTTTTTTTAAAGGCTAGCCGCGGCTGGCCTCGGCTATCCGCGGATTTTCCCGGCTTTCACACAAAAGCCGCGGCCGGGCTCGGCCTCAAAAATCGAGCCGCGACTGGTCGTGGCCGCGGCCGGACGGCATTTTACACAGCCTTGAAAACAGTTACAATAAGCTCTCTGAGCAAATTTTTGACACAAAGACTGAGTAAGCTTTTGAATATAGTAGACATTGGCAAAGTTGATTAGAAAATTCGCCGATTTCGAAATCGATGTCTGAAGATTGTTCGGTTTTATGAAGACTTTTGAAATGTTCAAACAGAAAACTTGCAAATACATATAAATTTCAACTTATATTTTCTGTTTCAAAGTGGTCCAATAATCTTTTCAAATAGAGAAAACAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCTTGATTCTAGAAGAGTGC</pcr_primer_p1>
		<pcr_primer_p2>GCTCAGAGAGCTTATTGTAACTG</pcr_primer_p2>
		<pcr_amplicon_size>514</pcr_amplicon_size>
		<canonical_amplicon>TTCCTTGATTCTAGAAGAGTGCCTTTTTTCGCGCCGTTTTTTTTGGTCGCATGCCACAAATTCGTAAGACTCGGCTGTTCGTTTCAAAGCTTTCGTGTCGAGACCAAAGCCTGTGCGTTAGAGCGCATTAACAAGCATTTTACAAGACGTTCCGAAAAAAAACGCCGTGCGGCAGGTCGTGGCTTCAGAAAAAAATATTTGAAGAAGCCGTGGCCGGCCCAGGCTAGCCGTGCGACTTCTCATGGCTTTTCAAAAGAATCTTTTCATGAGAAACATAGTTTTTTTTGAAATGTAGGACAAAAAAATATAAATTCTTCAAACACGAATTGATTTTCACTTCACGCTTTTTTTAAAGGCTAGCCGCGGCTGGCCTCGGCTATCCGCGGATTTTCCCGGCTTTCACACAAAAGCCGCGGCCGGGCTCGGCCTCAAAAATCGAGCCGCGACTGGTCGTGGCCGCGGCCGGACGGCATTTTACACAGCCTTGAAAACAGTTACAATAAGCTCTCTGAGC</canonical_amplicon>
		<polymorphic_amplicon>TTCCTTGATTCTAGAAGAGTGCCTTTTTTCGCGCCGTTTTTTTTGGTCGCATGCCACAAATTCGTAAGACTCGGCTGTTCGTTTCAAAGCTTTCGTGTCGAGACCAAAGCCTGTGCGTTAGAGCGCATTAACAAGCATTTTACAAGACGTTCCGAAAAAAAACGCCGTGCGGCAGGTCGTGGCTTCAGAAAAAAATATTTGAAGAAGCCGTGGCCGGCCCAGGCTAGCCGTGCGRCTTCTCATGGCTTTTCAAAAGAATCTTTTCATGAGAAACATAGTTTTTTTTGAAATGTAGGACAAAAAAATATAAATTCTTCAAACACGAATTGATTTTCACTTCACGCTTTTTTTAAAGGCTAGCCGCGGCTGGCCTCGGCTATCCGCGGATTTTCCCGGCTTTCACACAAAAGCCGCGGCCGGGCTCGGCCTCAAAAATCGAGCCGCGACTGGTCGTGGCCGCGGCCGGACGGCATTTTACACAGCCTTGAAAACAGTTACAATAAGCTCTCTGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35906</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>323314</contig_pos>
        <strand>+</strand>
        <context>TATTCCTCCG[A/C]TTTTTCCAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGGAAATGTGGAAAATCAAATATTGAAAATCCTTAAATCTATTCCTCCG</left_flank>
        <right_flank>TTTTTCCAATTTTTTCCACTCTCATTTTTTTGTCACGAAACCTGCTATAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTAAAACATTGGTTTCTCACATCAATTTCGCTTTGATTTGCAATTTGCAGTTTCACTTTGTTCTCTATTTGAAAGGATTTTCTTTTTTTTTATTCAGTTCGAGTTATGCCGAAACGAAAAGTTTTCTTAAAAAAATTCCTAAAAGTTCAGAAGCTTATAAATTATACACCATCTCACCTCCAAAAAAAACATTTTCCGCTCCTTTTACTGCTTCGCAAGGTTTCGAATGTTATAAAACACCTCTCAATATTACAAAATCAGAAACATTTTTCAGTTTCACTGCTTCCTGAAATCATGAACTTATCTTCAAAAATATTCTTTCCATTATTTACACTCTCAAACAAATCTAGCCAGTTTGACCGAATTTTCTAAATCCTAAGTTTTTTAATATATATGTCTTAAATACTATTCTAGAATTTTCAGATAAAATTTTTAATTTGGTTTTTTTTGGAAATGTGGAAAATCAAATATTGAAAATCCTTAAATCTATTCCTCCGTTTTTTCCAATTTTTTCCACTCTCATTTTTTTGTCACGAAACCTGCTATACCGAATCATTTATGCATAAACCTCAGGTTCCGTGCATGACACTTTTTCTTCCTTCTCCTTTTTCCCAAACCCCTGATTTCCTCCTTTTTCTATGATCCAAGGTCCAAATTTGGGTTTTCATGACGAATTTTTTTTTCGGGAATATTCAGGGGAGGGGTATCAGAAAACGAAAAAAGAAAAAAAATCGTATGAAAGATGAGAAGGGGGAAGACCTAACTCGATTTTTTTCTTTGCCGCTTGCCTCGCGTTTTGAGCCGTTTTGAGTCATGATGTACTCCTTTTTCCACGGATATCCAGACAGATGAGATTTTTTTTGGGATTATATCTACATGAACACATTTTTTGACTTATTTTTGATCACTGAGATGTTTGAGTTTTTTTTTGACAAGAAGGTTTTGGCTTACATTGTCTGTTTCTGAAATGTGTTTTGTTGTGTTACTTGGGAATTGAT</canonical>
            <polymorphic>AAGTAAAACATTGGTTTCTCACATCAATTTCGCTTTGATTTGCAATTTGCAGTTTCACTTTGTTCTCTATTTGAAAGGATTTTCTTTTTTTTTATTCAGTTCGAGTTATGCCGAAACGAAAAGTTTTCTTAAAAAAATTCCTAAAAGTTCAGAAGCTTATAAATTATACACCATCTCACCTCCAAAAAAAACATTTTCCGCTCCTTTTACTGCTTCGCAAGGTTTCGAATGTTATAAAACACCTCTCAATATTACAAAATCAGAAACATTTTTCAGTTTCACTGCTTCCTGAAATCATGAACTTATCTTCAAAAATATTCTTTCCATTATTTACACTCTCAAACAAATCTAGCCAGTTTGACCGAATTTTCTAAATCCTAAGTTTTTTAATATATATGTCTTAAATACTATTCTAGAATTTTCAGATAAAATTTTTAATTTGGTTTTTTTTGGAAATGTGGAAAATCAAATATTGAAAATCCTTAAATCTATTCCTCCGMTTTTTCCAATTTTTTCCACTCTCATTTTTTTGTCACGAAACCTGCTATACCGAATCATTTATGCATAAACCTCAGGTTCCGTGCATGACACTTTTTCTTCCTTCTCCTTTTTCCCAAACCCCTGATTTCCTCCTTTTTCTATGATCCAAGGTCCAAATTTGGGTTTTCATGACGAATTTTTTTTTCGGGAATATTCAGGGGAGGGGTATCAGAAAACGAAAAAAGAAAAAAAATCGTATGAAAGATGAGAAGGGGGAAGACCTAACTCGATTTTTTTCTTTGCCGCTTGCCTCGCGTTTTGAGCCGTTTTGAGTCATGATGTACTCCTTTTTCCACGGATATCCAGACAGATGAGATTTTTTTTGGGATTATATCTACATGAACACATTTTTTGACTTATTTTTGATCACTGAGATGTTTGAGTTTTTTTTTGACAAGAAGGTTTTGGCTTACATTGTCTGTTTCTGAAATGTGTTTTGTTGTGTTACTTGGGAATTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCGAATTTTCTAAATCCTAAG</pcr_primer_p1>
		<pcr_primer_p2>AAGGAGAAGGAAGAAAAAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACCGAATTTTCTAAATCCTAAGTTTTTTAATATATATGTCTTAAATACTATTCTAGAATTTTCAGATAAAATTTTTAATTTGGTTTTTTTTGGAAATGTGGAAAATCAAATATTGAAAATCCTTAAATCTATTCCTCCGTTTTTTCCAATTTTTTCCACTCTCATTTTTTTGTCACGAAACCTGCTATACCGAATCATTTATGCATAAACCTCAGGTTCCGTGCATGACACTTTTTCTTCCTTCTCCTT</canonical_amplicon>
		<polymorphic_amplicon>GACCGAATTTTCTAAATCCTAAGTTTTTTAATATATATGTCTTAAATACTATTCTAGAATTTTCAGATAAAATTTTTAATTTGGTTTTTTTTGGAAATGTGGAAAATCAAATATTGAAAATCCTTAAATCTATTCCTCCGMTTTTTCCAATTTTTTCCACTCTCATTTTTTTGTCACGAAACCTGCTATACCGAATCATTTATGCATAAACCTCAGGTTCCGTGCATGACACTTTTTCTTCCTTCTCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35907</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>346544</contig_pos>
        <strand>+</strand>
        <context>TGRCCGAAAA[A/C]CGGGACCAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TACTCCCACAACTCCTCCGCTCACAATTCGAACTTGTCGTTGGCCGAAAA</left_flank>
        <right_flank>CGGGACCAATAACGGATCCATCAGCTATGCTGGTCCCAGAAAATGTCAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGACTACTCGGCTGTTGTCAAGGATGATTGTACTTATTTGGAAATCTCAGTGTCTGCGTTTATCAATGCGTACAAGGCGTCGTTGATGCAAAGGGAAAGGCCAATGTGAGTTTTTTTTTATTTTAAAGGGGGAATCCGACCAAAAATTTTTATTGCATTAAAATGTGTTAAAAGTTATCTATTCTCCGAATATTATTGCGAAAAAATTCAAAAAAAAATCCGAAATTCCCGAAAAACGGCGTTGAAAAGGAAGAAAATCCAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCAGCAGGCGCCTTTCCTACGTGGCAAATTTTCCGGAAAAATAGATGTATTACCACTAGGTTTGGTTATATTACTAATAACTCGAATACTTCTAAATAATAGGCCCTCATTTATTCCAGAAACGACATGTCTGACTACTCCCACAACTCCTCCGCTCACAATTCGAACTTGTCGTTGGCCGAAAACCGGGACCAATAACGGATCCATCAGCTATGCTGGTCCCAGAAAATGTCAGAAAACCATCAATTGTTTCAGTGGAAGCAACGCCAAGGGTGCTCAACATGATAGGACAACATCCGGTGGCACCGGTTGCCGAGGAGGTAATTTTTTGTCAAAAACTTTAGGTTTCAATACAATAGTGGATATTAATTAGATTTTAAAAAGACAAAAATAATTTCAAAACTTCATGAAACATTAAACAATTTTTTGGAAAAAATCAAGTTTCAGGAAGAAATGTCACTTCTGGATAAGAACTCAGCAAGATGATCCAGACCAAAATGCATATAGGAAATATTTAATTCTCAAAATGCCAATAATTTTCCAAAATACGGTATATATATCCCCTGCTCAAAATCTTCTCACTTCTTGTATAGTTTTTTTTCTTTTTTCTCCCAGACAGACTTCAGATCTCTTGTTCCACTCTAAAAGTCGGTTTTCCATCTTTTTCTACTTATAAATATGTTCCC</canonical>
            <polymorphic>CAGACTACTCGGCTGTTGTCAAGGATGATTGTACTTATTTGGAAATCTCAGTGTCTGCGTTTATCAATGCGTACAAGGCGTCGTTGATGCAAAGGGAAAGGCCAATGTGAGTTTTTTTTTATTTTAAAGGGGGAATCCGACCAAAAATTTTTATTGCATTAAAATGTGTTAAAAGTTATCTATTCTCCGAATATTATTGCGAAAAAATTCAAAAAAAAATCCGAAATTCCCGAAAAACGGCGTTGAAAAGGAAGAAAATCCAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGGCAGCAGGCGCCTTTCCTACGTGGCAAATTTTCCGGAAAAATAGATGTATTACCACTAGGTTTGGTTATATTACTAATAACTCGAATACTTCTAAATAATAGGCCCTCATTTATTCCAGAAACGACATGTCTGACTACTCCCACAACTCCTCCGCTCACAATTCGAACTTGTCGTTGGCCGAAAAMCGGGACCAATAACGGATCCATCAGCTATGCTGGTCCCAGAAAATGTCAGAAAACCATCAATTGTTTCAGTGGAAGCAACGCCAAGGGTGCTCAACATGATAGGACAACATCCGGTGGCACCGGTTGCCGAGGAGGTAATTTTTTGTCAAAAACTTTAGGTTTCAATACAATAGTGGATATTAATTAGATTTTAAAAAGACAAAAATAATTTCAAAACTTCATGAAACATTAAACAATTTTTTGGAAAAAATCAAGTTTCAGGAAGAAATGTCACTTCTGGATAAGAACTCAGCAAGATGATCCAGACCAAAATGCATATAGGAAATATTTAATTCTCAAAATGCCAATAATTTTCCAAAATACGGTATATATATCCCCTGCTCAAAATCTTCTCACTTCTTGTATAGTTTTTTTTCTTTTTTCTCCCAGACAGACTTCAGATCTCTTGTTCCACTCTAAAAGTCGGTTTTCCATCTTTTTCTACTTATAAATATGTTCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>499 277 224</canonical_bands>
                <polymorphic_bands>723 277</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>499 277 224</canonical_bands>
                <polymorphic_bands>723 277</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>380 276 153 111 71 9</canonical_bands>
                <polymorphic_bands>380 276 264 71 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAAACGACATGTCTGACTAC</pcr_primer_p1>
		<pcr_primer_p2>TCCACTATTGTATTGAAACCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAGAAACGACATGTCTGACTACTCCCACAACTCCTCCGCTCACAATTCGAACTTGTCGTTGGCCGAAAACCGGGACCAATAACGGATCCATCAGCTATGCTGGTCCCAGAAAATGTCAGAAAACCATCAATTGTTTCAGTGGAAGCAACGCCAAGGGTGCTCAACATGATAGGACAACATCCGGTGGCACCGGTTGCCGAGGAGGTAATTTTTTGTCAAAAACTTTAGGTTTCAATACAATAGTGGA</canonical_amplicon>
		<polymorphic_amplicon>CAGAAACGACATGTCTGACTACTCCCACAACTCCTCCGCTCACAATTCGAACTTGTCGTTGGCCGAAAAMCGGGACCAATAACGGATCCATCAGCTATGCTGGTCCCAGAAAATGTCAGAAAACCATCAATTGTTTCAGTGGAAGCAACGCCAAGGGTGCTCAACATGATAGGACAACATCCGGTGGCACCGGTTGCCGAGGAGGTAATTTTTTGTCAAAAACTTTAGGTTTCAATACAATAGTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35908</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>348375</contig_pos>
        <strand></strand>
        <context>TAAAAAAATC[T/G]CATTATTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATC</left_flank>
        <right_flank>CATTATTTTGAGAAGGAAATTAACTAAAATTTTTTCGGTTTCACTGTTCC</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGTGTTTCGAAATTTGAATAATGACTTTCTGGCTGCATGGGATTCTAAAATTTCTTCAAAATATTTTATCAATTTTTAAACCTTTTATCTGGTAGTACTCGTATCGAATCGAGAAAAATAATACTTTACTTCATAAAACGTGTATCTGAAACCGAATAATTTTACTAGCTTATTCCCCTGATTCAATTTCTGCAATTCCCCAAAAATCGCCCTTCAAATTCACAGAAAATTCCTCCGGATGTGTTTATAAAAACTACCGATTTCCCCTGAAAACCTAGAAAAAAAATAAGAAGCTCCGGCGCATCCGATTCCAATTTCCCGTCACATTTCCGAAGGAGACGGGTAGCTCCAAGTAGGAAAAAAATTGGTCAATAAATCAGTTGGTTTCGGGTGAAATGGCGGAGAAGAAAAAGTGAATGGATGGGTGACCCTAAGGTTTTGATTGTTTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATCTCATTATTTTGAGAAGGAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATCAAACGAATTACACACTTTTAATGAGTTGTTGACACCGAATTGGTCTAGTTTGCCATTTTCGCAAATTTTTACTG</canonical>
            <polymorphic>TTTTGTGTTTCGAAATTTGAATAATGACTTTCTGGCTGCATGGGATTCTAAAATTTCTTCAAAATATTTTATCAATTTTTAAACCTTTTATCTGGTAGTACTCGTATCGAATCGAGAAAAATAATACTTTACTTCATAAAACGTGTATCTGAAACCGAATAATTTTACTAGCTTATTCCCCTGATTCAATTTCTGCAATTCCCCAAAAATCGCCCTTCAAATTCACAGAAAATTCCTCCGGATGTGTTTATAAAAACTACCGATTTCCCCTGAAAACCTAGAAAAAAAATAAGAAGCTCCGGCGCATCCGATTCCAATTTCCCGTCACATTTCCGAAGGAGACGGGTAGCTCCAAGTAGGAAAAAAATTGGTCAATAAATCAGTTGGTTTCGGGTGAAATGGCGGAGAAGAAAAAGTGAATGGATGGGTGACCCTAAGGTTTTGATTGTTTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATCKCATTATTTTGAGAAGGAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATCAAACGAATTACACACTTTTAATGAGTTGTTGACACCGAATTGGTCTAGTTTGCCATTTTCGCAAATTTTTACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTGGTCAATAAATCAGTTG</pcr_primer_p1>
		<pcr_primer_p2>TTTGGAAGAGTTGATGAAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATTGGTCAATAAATCAGTTGGTTTCGGGTGAAATGGCGGAGAAGAAAAAGTGAATGGATGGGTGACCCTAAGGTTTTGATTGTTTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATCTCATTATTTTGAGAAGGAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAATTGGTCAATAAATCAGTTGGTTTCGGGTGAAATGGCGGAGAAGAAAAAGTGAATGGATGGGTGACCCTAAGGTTTTGATTGTTTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATCKCATTATTTTGAGAAGGAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35909</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>348399</contig_pos>
        <strand>+</strand>
        <context>AGGAAATTAA[C/T]TAAAATTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCAAGGGGAAAACTTTTAAAAAAATCTCATTATTTTGAGAAGGAAATTAA</left_flank>
        <right_flank>TAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACTTTCTGGCTGCATGGGATTCTAAAATTTCTTCAAAATATTTTATCAATTTTTAAACCTTTTATCTGGTAGTACTCGTATCGAATCGAGAAAAATAATACTTTACTTCATAAAACGTGTATCTGAAACCGAATAATTTTACTAGCTTATTCCCCTGATTCAATTTCTGCAATTCCCCAAAAATCGCCCTTCAAATTCACAGAAAATTCCTCCGGATGTGTTTATAAAAACTACCGATTTCCCCTGAAAACCTAGAAAAAAAATAAGAAGCTCCGGCGCATCCGATTCCAATTTCCCGTCACATTTCCGAAGGAGACGGGTAGCTCCAAGTAGGAAAAAAATTGGTCAATAAATCAGTTGGTTTCGGGTGAAATGGCGGAGAAGAAAAAGTGAATGGATGGGTGACCCTAAGGTTTTGATTGTTTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATCTCATTATTTTGAGAAGGAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATCAAACGAATTACACACTTTTAATGAGTTGTTGACACCGAATTGGTCTAGTTTGCCATTTTCGCAAATTTTTACTGCTTCCCATAATCCACAATTTCCAG</canonical>
            <polymorphic>TGACTTTCTGGCTGCATGGGATTCTAAAATTTCTTCAAAATATTTTATCAATTTTTAAACCTTTTATCTGGTAGTACTCGTATCGAATCGAGAAAAATAATACTTTACTTCATAAAACGTGTATCTGAAACCGAATAATTTTACTAGCTTATTCCCCTGATTCAATTTCTGCAATTCCCCAAAAATCGCCCTTCAAATTCACAGAAAATTCCTCCGGATGTGTTTATAAAAACTACCGATTTCCCCTGAAAACCTAGAAAAAAAATAAGAAGCTCCGGCGCATCCGATTCCAATTTCCCGTCACATTTCCGAAGGAGACGGGTAGCTCCAAGTAGGAAAAAAATTGGTCAATAAATCAGTTGGTTTCGGGTGAAATGGCGGAGAAGAAAAAGTGAATGGATGGGTGACCCTAAGGTTTTGATTGTTTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATCTCATTATTTTGAGAAGGAAATTAAYTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATCAAACGAATTACACACTTTTAATGAGTTGTTGACACCGAATTGGTCTAGTTTGCCATTTTCGCAAATTTTTACTGCTTCCCATAATCCACAATTTCCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTGGTCAATAAATCAGTTG</pcr_primer_p1>
		<pcr_primer_p2>TTTGGAAGAGTTGATGAAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATTGGTCAATAAATCAGTTGGTTTCGGGTGAAATGGCGGAGAAGAAAAAGTGAATGGATGGGTGACCCTAAGGTTTTGATTGTTTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATCTCATTATTTTGAGAAGGAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAATTGGTCAATAAATCAGTTGGTTTCGGGTGAAATGGCGGAGAAGAAAAAGTGAATGGATGGGTGACCCTAAGGTTTTGATTGTTTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATCTCATTATTTTGAGAAGGAAATTAAYTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35910</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>348530</contig_pos>
        <strand></strand>
        <context>cgtaaaaact[T/C]twatagaagc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACT</left_flank>
        <right_flank>TTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAATAATTTTACTAGCTTATTCCCCTGATTCAATTTCTGCAATTCCCCAAAAATCGCCCTTCAAATTCACAGAAAATTCCTCCGGATGTGTTTATAAAAACTACCGATTTCCCCTGAAAACCTAGAAAAAAAATAAGAAGCTCCGGCGCATCCGATTCCAATTTCCCGTCACATTTCCGAAGGAGACGGGTAGCTCCAAGTAGGAAAAAAATTGGTCAATAAATCAGTTGGTTTCGGGTGAAATGGCGGAGAAGAAAAAGTGAATGGATGGGTGACCCTAAGGTTTTGATTGTTTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATCTCATTATTTTGAGAAGGAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATCAAACGAATTACACACTTTTAATGAGTTGTTGACACCGAATTGGTCTAGTTTGCCATTTTCGCAAATTTTTACTGCTTCCCATAATCCACAATTTCCAGTTTTTTCTCATTTTTGTCATTAAGTTGTTGTCCATGACAATGTCTTGTACTATGCCAATAAACTAAAGAATTTTTTTCAGTTTCAGTAATGAGTTGATACTGTAGTTCTTGGGTGGCGTTCTATTTTAGTA</canonical>
            <polymorphic>CGAATAATTTTACTAGCTTATTCCCCTGATTCAATTTCTGCAATTCCCCAAAAATCGCCCTTCAAATTCACAGAAAATTCCTCCGGATGTGTTTATAAAAACTACCGATTTCCCCTGAAAACCTAGAAAAAAAATAAGAAGCTCCGGCGCATCCGATTCCAATTTCCCGTCACATTTCCGAAGGAGACGGGTAGCTCCAAGTAGGAAAAAAATTGGTCAATAAATCAGTTGGTTTCGGGTGAAATGGCGGAGAAGAAAAAGTGAATGGATGGGTGACCCTAAGGTTTTGATTGTTTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATCTCATTATTTTGAGAAGGAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTYTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATCAAACGAATTACACACTTTTAATGAGTTGTTGACACCGAATTGGTCTAGTTTGCCATTTTCGCAAATTTTTACTGCTTCCCATAATCCACAATTTCCAGTTTTTTCTCATTTTTGTCATTAAGTTGTTGTCCATGACAATGTCTTGTACTATGCCAATAAACTAAAGAATTTTTTTCAGTTTCAGTAATGAGTTGATACTGTAGTTCTTGGGTGGCGTTCTATTTTAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCATCAACTCTTCCAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGATGTAAATAGTATTGTTGTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>313</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTYTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35911</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>348532</contig_pos>
        <strand></strand>
        <context>taaaaactyt[T/A]atagaagccy</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTT</left_flank>
        <right_flank>ATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAATTTTACTAGCTTATTCCCCTGATTCAATTTCTGCAATTCCCCAAAAATCGCCCTTCAAATTCACAGAAAATTCCTCCGGATGTGTTTATAAAAACTACCGATTTCCCCTGAAAACCTAGAAAAAAAATAAGAAGCTCCGGCGCATCCGATTCCAATTTCCCGTCACATTTCCGAAGGAGACGGGTAGCTCCAAGTAGGAAAAAAATTGGTCAATAAATCAGTTGGTTTCGGGTGAAATGGCGGAGAAGAAAAAGTGAATGGATGGGTGACCCTAAGGTTTTGATTGTTTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATCTCATTATTTTGAGAAGGAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATCAAACGAATTACACACTTTTAATGAGTTGTTGACACCGAATTGGTCTAGTTTGCCATTTTCGCAAATTTTTACTGCTTCCCATAATCCACAATTTCCAGTTTTTTCTCATTTTTGTCATTAAGTTGTTGTCCATGACAATGTCTTGTACTATGCCAATAAACTAAAGAATTTTTTTCAGTTTCAGTAATGAGTTGATACTGTAGTTCTTGGGTGGCGTTCTATTTTAGTATT</canonical>
            <polymorphic>AATAATTTTACTAGCTTATTCCCCTGATTCAATTTCTGCAATTCCCCAAAAATCGCCCTTCAAATTCACAGAAAATTCCTCCGGATGTGTTTATAAAAACTACCGATTTCCCCTGAAAACCTAGAAAAAAAATAAGAAGCTCCGGCGCATCCGATTCCAATTTCCCGTCACATTTCCGAAGGAGACGGGTAGCTCCAAGTAGGAAAAAAATTGGTCAATAAATCAGTTGGTTTCGGGTGAAATGGCGGAGAAGAAAAAGTGAATGGATGGGTGACCCTAAGGTTTTGATTGTTTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATCTCATTATTTTGAGAAGGAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTWATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATCAAACGAATTACACACTTTTAATGAGTTGTTGACACCGAATTGGTCTAGTTTGCCATTTTCGCAAATTTTTACTGCTTCCCATAATCCACAATTTCCAGTTTTTTCTCATTTTTGTCATTAAGTTGTTGTCCATGACAATGTCTTGTACTATGCCAATAAACTAAAGAATTTTTTTCAGTTTCAGTAATGAGTTGATACTGTAGTTCTTGGGTGGCGTTCTATTTTAGTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCATCAACTCTTCCAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGATGTAAATAGTATTGTTGTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>313</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTWATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35912</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>348542</contig_pos>
        <strand></strand>
        <context>watagaagcc[C/T]mcccaaccgt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCC</left_flank>
        <right_flank>ACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAGCTTATTCCCCTGATTCAATTTCTGCAATTCCCCAAAAATCGCCCTTCAAATTCACAGAAAATTCCTCCGGATGTGTTTATAAAAACTACCGATTTCCCCTGAAAACCTAGAAAAAAAATAAGAAGCTCCGGCGCATCCGATTCCAATTTCCCGTCACATTTCCGAAGGAGACGGGTAGCTCCAAGTAGGAAAAAAATTGGTCAATAAATCAGTTGGTTTCGGGTGAAATGGCGGAGAAGAAAAAGTGAATGGATGGGTGACCCTAAGGTTTTGATTGTTTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATCTCATTATTTTGAGAAGGAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATCAAACGAATTACACACTTTTAATGAGTTGTTGACACCGAATTGGTCTAGTTTGCCATTTTCGCAAATTTTTACTGCTTCCCATAATCCACAATTTCCAGTTTTTTCTCATTTTTGTCATTAAGTTGTTGTCCATGACAATGTCTTGTACTATGCCAATAAACTAAAGAATTTTTTTCAGTTTCAGTAATGAGTTGATACTGTAGTTCTTGGGTGGCGTTCTATTTTAGTATTTACGGTTTTC</canonical>
            <polymorphic>CTAGCTTATTCCCCTGATTCAATTTCTGCAATTCCCCAAAAATCGCCCTTCAAATTCACAGAAAATTCCTCCGGATGTGTTTATAAAAACTACCGATTTCCCCTGAAAACCTAGAAAAAAAATAAGAAGCTCCGGCGCATCCGATTCCAATTTCCCGTCACATTTCCGAAGGAGACGGGTAGCTCCAAGTAGGAAAAAAATTGGTCAATAAATCAGTTGGTTTCGGGTGAAATGGCGGAGAAGAAAAAGTGAATGGATGGGTGACCCTAAGGTTTTGATTGTTTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATCTCATTATTTTGAGAAGGAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCYACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATCAAACGAATTACACACTTTTAATGAGTTGTTGACACCGAATTGGTCTAGTTTGCCATTTTCGCAAATTTTTACTGCTTCCCATAATCCACAATTTCCAGTTTTTTCTCATTTTTGTCATTAAGTTGTTGTCCATGACAATGTCTTGTACTATGCCAATAAACTAAAGAATTTTTTTCAGTTTCAGTAATGAGTTGATACTGTAGTTCTTGGGTGGCGTTCTATTTTAGTATTTACGGTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>125 100 86 81 69 69 58 54 53 52 44 41 39 28 22 22 21 20 12 2 2</canonical_bands>
                <polymorphic_bands>127 125 100 81 69 69 58 54 53 52 44 39 28 22 22 21 20 12 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCATCAACTCTTCCAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGATGTAAATAGTATTGTTGTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>313</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCYACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35913</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>348543</contig_pos>
        <strand></strand>
        <context>atagaagccy[A/C]cccaaccgtc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCC</left_flank>
        <right_flank>CCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGCTTATTCCCCTGATTCAATTTCTGCAATTCCCCAAAAATCGCCCTTCAAATTCACAGAAAATTCCTCCGGATGTGTTTATAAAAACTACCGATTTCCCCTGAAAACCTAGAAAAAAAATAAGAAGCTCCGGCGCATCCGATTCCAATTTCCCGTCACATTTCCGAAGGAGACGGGTAGCTCCAAGTAGGAAAAAAATTGGTCAATAAATCAGTTGGTTTCGGGTGAAATGGCGGAGAAGAAAAAGTGAATGGATGGGTGACCCTAAGGTTTTGATTGTTTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATCTCATTATTTTGAGAAGGAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATCAAACGAATTACACACTTTTAATGAGTTGTTGACACCGAATTGGTCTAGTTTGCCATTTTCGCAAATTTTTACTGCTTCCCATAATCCACAATTTCCAGTTTTTTCTCATTTTTGTCATTAAGTTGTTGTCCATGACAATGTCTTGTACTATGCCAATAAACTAAAGAATTTTTTTCAGTTTCAGTAATGAGTTGATACTGTAGTTCTTGGGTGGCGTTCTATTTTAGTATTTACGGTTTTCA</canonical>
            <polymorphic>TAGCTTATTCCCCTGATTCAATTTCTGCAATTCCCCAAAAATCGCCCTTCAAATTCACAGAAAATTCCTCCGGATGTGTTTATAAAAACTACCGATTTCCCCTGAAAACCTAGAAAAAAAATAAGAAGCTCCGGCGCATCCGATTCCAATTTCCCGTCACATTTCCGAAGGAGACGGGTAGCTCCAAGTAGGAAAAAAATTGGTCAATAAATCAGTTGGTTTCGGGTGAAATGGCGGAGAAGAAAAAGTGAATGGATGGGTGACCCTAAGGTTTTGATTGTTTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATCTCATTATTTTGAGAAGGAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCMCCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATCAAACGAATTACACACTTTTAATGAGTTGTTGACACCGAATTGGTCTAGTTTGCCATTTTCGCAAATTTTTACTGCTTCCCATAATCCACAATTTCCAGTTTTTTCTCATTTTTGTCATTAAGTTGTTGTCCATGACAATGTCTTGTACTATGCCAATAAACTAAAGAATTTTTTTCAGTTTCAGTAATGAGTTGATACTGTAGTTCTTGGGTGGCGTTCTATTTTAGTATTTACGGTTTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>125 100 86 81 69 69 57 54 53 52 44 41 39 29 22 22 21 20 12 2 2</canonical_bands>
                <polymorphic_bands>127 125 100 81 69 69 57 54 53 52 44 39 29 22 22 21 20 12 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCATCAACTCTTCCAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGATGTAAATAGTATTGTTGTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>313</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCMCCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35914</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>348654</contig_pos>
        <strand></strand>
        <context>cagttgatac[A/G]tttttgatat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATAC</left_flank>
        <right_flank>TTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAAAAAAATAAGAAGCTCCGGCGCATCCGATTCCAATTTCCCGTCACATTTCCGAAGGAGACGGGTAGCTCCAAGTAGGAAAAAAATTGGTCAATAAATCAGTTGGTTTCGGGTGAAATGGCGGAGAAGAAAAAGTGAATGGATGGGTGACCCTAAGGTTTTGATTGTTTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATCTCATTATTTTGAGAAGGAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATCAAACGAATTACACACTTTTAATGAGTTGTTGACACCGAATTGGTCTAGTTTGCCATTTTCGCAAATTTTTACTGCTTCCCATAATCCACAATTTCCAGTTTTTTCTCATTTTTGTCATTAAGTTGTTGTCCATGACAATGTCTTGTACTATGCCAATAAACTAAAGAATTTTTTTCAGTTTCAGTAATGAGTTGATACTGTAGTTCTTGGGTGGCGTTCTATTTTAGTATTTACGGTTTTCAAATTTTTATGCTAATAAATTGAATTTCCATATTTTGAGAATGAAATTTTGAAAAATTAGTTGAATTTCTGGCAGTTTTGAGAAGGAATTTGGCAGTAATGCAGTAGTTCTA</canonical>
            <polymorphic>AGAAAAAAAATAAGAAGCTCCGGCGCATCCGATTCCAATTTCCCGTCACATTTCCGAAGGAGACGGGTAGCTCCAAGTAGGAAAAAAATTGGTCAATAAATCAGTTGGTTTCGGGTGAAATGGCGGAGAAGAAAAAGTGAATGGATGGGTGACCCTAAGGTTTTGATTGTTTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATCTCATTATTTTGAGAAGGAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACRTTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATCAAACGAATTACACACTTTTAATGAGTTGTTGACACCGAATTGGTCTAGTTTGCCATTTTCGCAAATTTTTACTGCTTCCCATAATCCACAATTTCCAGTTTTTTCTCATTTTTGTCATTAAGTTGTTGTCCATGACAATGTCTTGTACTATGCCAATAAACTAAAGAATTTTTTTCAGTTTCAGTAATGAGTTGATACTGTAGTTCTTGGGTGGCGTTCTATTTTAGTATTTACGGTTTTCAAATTTTTATGCTAATAAATTGAATTTCCATATTTTGAGAATGAAATTTTGAAAAATTAGTTGAATTTCTGGCAGTTTTGAGAAGGAATTTGGCAGTAATGCAGTAGTTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCATCAACTCTTCCAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGATGTAAATAGTATTGTTGTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>313</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACRTTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35915</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>348712</contig_pos>
        <strand></strand>
        <context>cagtgtgaga[T/G]cccttctaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGA</left_flank>
        <right_flank>CCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGACGGGTAGCTCCAAGTAGGAAAAAAATTGGTCAATAAATCAGTTGGTTTCGGGTGAAATGGCGGAGAAGAAAAAGTGAATGGATGGGTGACCCTAAGGTTTTGATTGTTTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATCTCATTATTTTGAGAAGGAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATCAAACGAATTACACACTTTTAATGAGTTGTTGACACCGAATTGGTCTAGTTTGCCATTTTCGCAAATTTTTACTGCTTCCCATAATCCACAATTTCCAGTTTTTTCTCATTTTTGTCATTAAGTTGTTGTCCATGACAATGTCTTGTACTATGCCAATAAACTAAAGAATTTTTTTCAGTTTCAGTAATGAGTTGATACTGTAGTTCTTGGGTGGCGTTCTATTTTAGTATTTACGGTTTTCAAATTTTTATGCTAATAAATTGAATTTCCATATTTTGAGAATGAAATTTTGAAAAATTAGTTGAATTTCTGGCAGTTTTGAGAAGGAATTTGGCAGTAATGCAGTAGTTCTAAAAATTGCGAATATCACCATAAGATTTTCGAAAAAAAATCTAGGTTAGTTTTATCTGA</canonical>
            <polymorphic>GGAGACGGGTAGCTCCAAGTAGGAAAAAAATTGGTCAATAAATCAGTTGGTTTCGGGTGAAATGGCGGAGAAGAAAAAGTGAATGGATGGGTGACCCTAAGGTTTTGATTGTTTTTTTTTCCAGAAAACTCTCGGTGCAAGGGGAAAACTTTTAAAAAAATCTCATTATTTTGAGAAGGAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGAKCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATCAAACGAATTACACACTTTTAATGAGTTGTTGACACCGAATTGGTCTAGTTTGCCATTTTCGCAAATTTTTACTGCTTCCCATAATCCACAATTTCCAGTTTTTTCTCATTTTTGTCATTAAGTTGTTGTCCATGACAATGTCTTGTACTATGCCAATAAACTAAAGAATTTTTTTCAGTTTCAGTAATGAGTTGATACTGTAGTTCTTGGGTGGCGTTCTATTTTAGTATTTACGGTTTTCAAATTTTTATGCTAATAAATTGAATTTCCATATTTTGAGAATGAAATTTTGAAAAATTAGTTGAATTTCTGGCAGTTTTGAGAAGGAATTTGGCAGTAATGCAGTAGTTCTAAAAATTGCGAATATCACCATAAGATTTTCGAAAAAAAATCTAGGTTAGTTTTATCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>497 431 72</canonical_bands>
                <polymorphic_bands>569 431</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>497 431 72</canonical_bands>
                <polymorphic_bands>569 431</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCATCAACTCTTCCAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGATGTAAATAGTATTGTTGTGTCC</pcr_primer_p2>
		<pcr_amplicon_size>313</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGAKCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35916</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>348890</contig_pos>
        <strand>+</strand>
        <context>CCATAATCCA[C/T]AATTTCCAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGGTCTAGTTTGCCATTTTCGCAAATTTTTACTGCTTCCCATAATCCA</left_flank>
        <right_flank>AATTTCCAGTTTTTTCTCATTTTTGTCATTAAGTTGTTGTCCATGACAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATCAAACGAATTACACACTTTTAATGAGTTGTTGACACCGAATTGGTCTAGTTTGCCATTTTCGCAAATTTTTACTGCTTCCCATAATCCACAATTTCCAGTTTTTTCTCATTTTTGTCATTAAGTTGTTGTCCATGACAATGTCTTGTACTATGCCAATAAACTAAAGAATTTTTTTCAGTTTCAGTAATGAGTTGATACTGTAGTTCTTGGGTGGCGTTCTATTTTAGTATTTACGGTTTTCAAATTTTTATGCTAATAAATTGAATTTCCATATTTTGAGAATGAAATTTTGAAAAATTAGTTGAATTTCTGGCAGTTTTGAGAAGGAATTTGGCAGTAATGCAGTAGTTCTAAAAATTGCGAATATCACCATAAGATTTTCGAAAAAAAATCTAGGTTAGTTTTATCTGAAACAATGGTGCTATTTATCCCATCTTTTCGGAAGATTGATCAAAAGTATCACTCACTTTTGAAAACAATAACATTTTGAAACCGTATTTTATATGTTCATCATTTTTGCAATTTTCACTGCTTCCCATAATTTATAATTTCCTGTTTTTCTGACTTTTGTAATGCAGCGTTTCAATGC</canonical>
            <polymorphic>GAAATTAACTAAAATTTTTTCGGTTTCACTGTTCCTTGATTTTCGGAAAGTTTCTAATTGGGTTGCACTGAATCCCTATTTTCATCAACTCTTCCAAATTTCAGAATTATTGAAAGGTTTATAGGTTACCGTAAAAACTTTTATAGAAGCCCACCCAACCGTCAAATTTGAGCTCAATTATCTCGATTGATGTGAAAGATATGAAAAAATTGTACACGGATAAATTGTTTTTCAAAATATCAGTAAAATTTATCAGTTGATACATTTTTGATATCTTTTATAAGAGCCGAGACAATTGAACTTAAACTTTACAGTGTGAGATCCCTTCTAATGCAGGTTTTACAGTATCTCTAATTGTTTCGTTCGGACACAACAATACTATTTACATCAAGATCTTGTAGAAGACTAATCAAACGAATTACACACTTTTAATGAGTTGTTGACACCGAATTGGTCTAGTTTGCCATTTTCGCAAATTTTTACTGCTTCCCATAATCCAYAATTTCCAGTTTTTTCTCATTTTTGTCATTAAGTTGTTGTCCATGACAATGTCTTGTACTATGCCAATAAACTAAAGAATTTTTTTCAGTTTCAGTAATGAGTTGATACTGTAGTTCTTGGGTGGCGTTCTATTTTAGTATTTACGGTTTTCAAATTTTTATGCTAATAAATTGAATTTCCATATTTTGAGAATGAAATTTTGAAAAATTAGTTGAATTTCTGGCAGTTTTGAGAAGGAATTTGGCAGTAATGCAGTAGTTCTAAAAATTGCGAATATCACCATAAGATTTTCGAAAAAAAATCTAGGTTAGTTTTATCTGAAACAATGGTGCTATTTATCCCATCTTTTCGGAAGATTGATCAAAAGTATCACTCACTTTTGAAAACAATAACATTTTGAAACCGTATTTTATATGTTCATCATTTTTGCAATTTTCACTGCTTCCCATAATTTATAATTTCCTGTTTTTCTGACTTTTGTAATGCAGCGTTTCAATGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>156 125 100 86 62 61 54 53 52 52 41 41 39 28 22 20 4 2 2</canonical_bands>
                <polymorphic_bands>179 156 100 86 62 61 53 52 52 41 41 39 28 22 20 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAATTACACACTTTTAATGAGTT</pcr_primer_p1>
		<pcr_primer_p2>CATAAAAATTTGAAAACCGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGAATTACACACTTTTAATGAGTTGTTGACACCGAATTGGTCTAGTTTGCCATTTTCGCAAATTTTTACTGCTTCCCATAATCCACAATTTCCAGTTTTTTCTCATTTTTGTCATTAAGTTGTTGTCCATGACAATGTCTTGTACTATGCCAATAAACTAAAGAATTTTTTTCAGTTTCAGTAATGAGTTGATACTGTAGTTCTTGGGTGGCGTTCTATTTTAGTATTTACGGTTTTCAAATTTTTATG</canonical_amplicon>
		<polymorphic_amplicon>CGAATTACACACTTTTAATGAGTTGTTGACACCGAATTGGTCTAGTTTGCCATTTTCGCAAATTTTTACTGCTTCCCATAATCCAYAATTTCCAGTTTTTTCTCATTTTTGTCATTAAGTTGTTGTCCATGACAATGTCTTGTACTATGCCAATAAACTAAAGAATTTTTTTCAGTTTCAGTAATGAGTTGATACTGTAGTTCTTGGGTGGCGTTCTATTTTAGTATTTACGGTTTTCAAATTTTTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35917</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>411547</contig_pos>
        <strand>+</strand>
        <context>TATTTTAACT[C/G]ATTGTAAATA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGATGGTCGGGTTTTGGTTTGATGATGGCTCTTGAACTTATATTTTAACT</left_flank>
        <right_flank>ATTGTAAATAAACAAACTACTTCTGCTTTTATCCGCAAATAATAATAATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAGGAGTCTAGAGCTCAGCTGTCACGTGTCCCAACACTTTGAAAATGTTGGCGGGTGTAAAACAGACCTAGATTAAAAATTTGGCATTTGCAGAATTTTTTGAAAATTCCTAGTTTTTCCGATATTTTCTGTATTCATTGATCCCGTTGTTATACCGTTATATGTTATGAAAACGCGAAAATGCAGGCATCTTTTAAAAATCGGCAAGTAGCTGAAAAATTAGAAATTTTCAACAAATTCTGTTAATGCAATTTTTCAATCTAGGACGGTTGTATATCCTTTAAAACCTGTATTCCGAGTTAAACTGAACAATGACAATAATCCAAATTTTAAAAACCTGTTGTAACCGAAATATTTTCAGAACCCAACTGGAAATCTTCCTGGGCCCTCCACTAGAATACACCAGCGCAATTATACTGGAATTGATGACATGTGCTAATTTCCTGGTGATGGTCGGGTTTTGGTTTGATGATGGCTCTTGAACTTATATTTTAACTGATTGTAAATAAACAAACTACTTCTGCTTTTATCCGCAAATAATAATAATATGTTGTAACAGTAACTTCCATCAAGATTTTCAAAACTACGATTTTAAAAATTTATTATAATTACTTTTAATCACAAATCCCAATTAACCAAAGTTATCATAGAAATCAAATAAATAGGCGTATTGAAGTTGACACCGTCGGAAATCGTTTCTTCAGTGGCAGCAACCAATTTCGCTGGGCTTTCAAGAGCTAATTTGACAGGGTTTTCTGGAGCTGGAAGAGCGCACAGTCCATCTTGATTGATATATCCTTGAGTACATTTTGATCCGGGATCTCCTTTAGGAACCGGAAACGAGCTTCCAGTAACTCTGGAATCAAAAATTTCGTCTTCGTGTTATATAAAAAGTGCTCACTCTGGTTCAAAAACACACAAAGTATGAGTAGTCACCCTTTGGAAATTCACATGGAAATTTGGAGCACACCCGACCCGTTTCTGATGGGGGACAAGTT</canonical>
            <polymorphic>TTCAGGAGTCTAGAGCTCAGCTGTCACGTGTCCCAACACTTTGAAAATGTTGGCGGGTGTAAAACAGACCTAGATTAAAAATTTGGCATTTGCAGAATTTTTTGAAAATTCCTAGTTTTTCCGATATTTTCTGTATTCATTGATCCCGTTGTTATACCGTTATATGTTATGAAAACGCGAAAATGCAGGCATCTTTTAAAAATCGGCAAGTAGCTGAAAAATTAGAAATTTTCAACAAATTCTGTTAATGCAATTTTTCAATCTAGGACGGTTGTATATCCTTTAAAACCTGTATTCCGAGTTAAACTGAACAATGACAATAATCCAAATTTTAAAAACCTGTTGTAACCGAAATATTTTCAGAACCCAACTGGAAATCTTCCTGGGCCCTCCACTAGAATACACCAGCGCAATTATACTGGAATTGATGACATGTGCTAATTTCCTGGTGATGGTCGGGTTTTGGTTTGATGATGGCTCTTGAACTTATATTTTAACTSATTGTAAATAAACAAACTACTTCTGCTTTTATCCGCAAATAATAATAATATGTTGTAACAGTAACTTCCATCAAGATTTTCAAAACTACGATTTTAAAAATTTATTATAATTACTTTTAATCACAAATCCCAATTAACCAAAGTTATCATAGAAATCAAATAAATAGGCGTATTGAAGTTGACACCGTCGGAAATCGTTTCTTCAGTGGCAGCAACCAATTTCGCTGGGCTTTCAAGAGCTAATTTGACAGGGTTTTCTGGAGCTGGAAGAGCGCACAGTCCATCTTGATTGATATATCCTTGAGTACATTTTGATCCGGGATCTCCTTTAGGAACCGGAAACGAGCTTCCAGTAACTCTGGAATCAAAAATTTCGTCTTCGTGTTATATAAAAAGTGCTCACTCTGGTTCAAAAACACACAAAGTATGAGTAGTCACCCTTTGGAAATTCACATGGAAATTTGGAGCACACCCGACCCGTTTCTGATGGGGGACAAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACCTGTTGTAACCGAAATA</pcr_primer_p1>
		<pcr_primer_p2>TTGAAAATCTTGATGGAAGTTAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAACCTGTTGTAACCGAAATATTTTCAGAACCCAACTGGAAATCTTCCTGGGCCCTCCACTAGAATACACCAGCGCAATTATACTGGAATTGATGACATGTGCTAATTTCCTGGTGATGGTCGGGTTTTGGTTTGATGATGGCTCTTGAACTTATATTTTAACTGATTGTAAATAAACAAACTACTTCTGCTTTTATCCGCAAATAATAATAATATGTTGTAACAGTAACTTCCATCAAGATTTTCAA</canonical_amplicon>
		<polymorphic_amplicon>AAAACCTGTTGTAACCGAAATATTTTCAGAACCCAACTGGAAATCTTCCTGGGCCCTCCACTAGAATACACCAGCGCAATTATACTGGAATTGATGACATGTGCTAATTTCCTGGTGATGGTCGGGTTTTGGTTTGATGATGGCTCTTGAACTTATATTTTAACTSATTGTAAATAAACAAACTACTTCTGCTTTTATCCGCAAATAATAATAATATGTTGTAACAGTAACTTCCATCAAGATTTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35918</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>411637</contig_pos>
        <strand>+</strand>
        <context>TCAAAACTAC[A/G]atttwaaaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATAATAATATGTTGTAACAGTAACTTCCATCAAGATTTTCAAAACTAC</left_flank>
        <right_flank>ATTTTAAAAATTTATTATAATTACTTTTAATCACAAATCCCAATTAACCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCAGAATTTTTTGAAAATTCCTAGTTTTTCCGATATTTTCTGTATTCATTGATCCCGTTGTTATACCGTTATATGTTATGAAAACGCGAAAATGCAGGCATCTTTTAAAAATCGGCAAGTAGCTGAAAAATTAGAAATTTTCAACAAATTCTGTTAATGCAATTTTTCAATCTAGGACGGTTGTATATCCTTTAAAACCTGTATTCCGAGTTAAACTGAACAATGACAATAATCCAAATTTTAAAAACCTGTTGTAACCGAAATATTTTCAGAACCCAACTGGAAATCTTCCTGGGCCCTCCACTAGAATACACCAGCGCAATTATACTGGAATTGATGACATGTGCTAATTTCCTGGTGATGGTCGGGTTTTGGTTTGATGATGGCTCTTGAACTTATATTTTAACTGATTGTAAATAAACAAACTACTTCTGCTTTTATCCGCAAATAATAATAATATGTTGTAACAGTAACTTCCATCAAGATTTTCAAAACTACGATTTTAAAAATTTATTATAATTACTTTTAATCACAAATCCCAATTAACCAAAGTTATCATAGAAATCAAATAAATAGGCGTATTGAAGTTGACACCGTCGGAAATCGTTTCTTCAGTGGCAGCAACCAATTTCGCTGGGCTTTCAAGAGCTAATTTGACAGGGTTTTCTGGAGCTGGAAGAGCGCACAGTCCATCTTGATTGATATATCCTTGAGTACATTTTGATCCGGGATCTCCTTTAGGAACCGGAAACGAGCTTCCAGTAACTCTGGAATCAAAAATTTCGTCTTCGTGTTATATAAAAAGTGCTCACTCTGGTTCAAAAACACACAAAGTATGAGTAGTCACCCTTTGGAAATTCACATGGAAATTTGGAGCACACCCGACCCGTTTCTGATGGGGGACAAGTTCTTCCATTCCGAGAATCCGCCATCGGGCTAAATTTTGGATCAATTCAGATGGATTACTTCCAAATCGTTCCCGAAATATTCTTTGCCTGG</canonical>
            <polymorphic>TGCAGAATTTTTTGAAAATTCCTAGTTTTTCCGATATTTTCTGTATTCATTGATCCCGTTGTTATACCGTTATATGTTATGAAAACGCGAAAATGCAGGCATCTTTTAAAAATCGGCAAGTAGCTGAAAAATTAGAAATTTTCAACAAATTCTGTTAATGCAATTTTTCAATCTAGGACGGTTGTATATCCTTTAAAACCTGTATTCCGAGTTAAACTGAACAATGACAATAATCCAAATTTTAAAAACCTGTTGTAACCGAAATATTTTCAGAACCCAACTGGAAATCTTCCTGGGCCCTCCACTAGAATACACCAGCGCAATTATACTGGAATTGATGACATGTGCTAATTTCCTGGTGATGGTCGGGTTTTGGTTTGATGATGGCTCTTGAACTTATATTTTAACTGATTGTAAATAAACAAACTACTTCTGCTTTTATCCGCAAATAATAATAATATGTTGTAACAGTAACTTCCATCAAGATTTTCAAAACTACRATTTTAAAAATTTATTATAATTACTTTTAATCACAAATCCCAATTAACCAAAGTTATCATAGAAATCAAATAAATAGGCGTATTGAAGTTGACACCGTCGGAAATCGTTTCTTCAGTGGCAGCAACCAATTTCGCTGGGCTTTCAAGAGCTAATTTGACAGGGTTTTCTGGAGCTGGAAGAGCGCACAGTCCATCTTGATTGATATATCCTTGAGTACATTTTGATCCGGGATCTCCTTTAGGAACCGGAAACGAGCTTCCAGTAACTCTGGAATCAAAAATTTCGTCTTCGTGTTATATAAAAAGTGCTCACTCTGGTTCAAAAACACACAAAGTATGAGTAGTCACCCTTTGGAAATTCACATGGAAATTTGGAGCACACCCGACCCGTTTCTGATGGGGGACAAGTTCTTCCATTCCGAGAATCCGCCATCGGGCTAAATTTTGGATCAATTCAGATGGATTACTTCCAAATCGTTCCCGAAATATTCTTTGCCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAAACTACTTCTGCTTTTATCC</pcr_primer_p1>
		<pcr_primer_p2>AGAAAACCCTGTCAAATTAGC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACAAACTACTTCTGCTTTTATCCGCAAATAATAATAATATGTTGTAACAGTAACTTCCATCAAGATTTTCAAAACTACGATTTTAAAAATTTATTATAATTACTTTTAATCACAAATCCCAATTAACCAAAGTTATCATAGAAATCAAATAAATAGGCGTATTGAAGTTGACACCGTCGGAAATCGTTTCTTCAGTGGCAGCAACCAATTTCGCTGGGCTTTCAAGAGCTAATTTGACAGGGTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>AACAAACTACTTCTGCTTTTATCCGCAAATAATAATAATATGTTGTAACAGTAACTTCCATCAAGATTTTCAAAACTACRATTTTAAAAATTTATTATAATTACTTTTAATCACAAATCCCAATTAACCAAAGTTATCATAGAAATCAAATAAATAGGCGTATTGAAGTTGACACCGTCGGAAATCGTTTCTTCAGTGGCAGCAACCAATTTCGCTGGGCTTTCAAGAGCTAATTTGACAGGGTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35919</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>411642</contig_pos>
        <strand></strand>
        <context>ACTACRattt[T/A]aaaaatttat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATAATATGTTGTAACAGTAACTTCCATCAAGATTTTCAAAACTACGATTT</left_flank>
        <right_flank>AAAAATTTATTATAATTACTTTTAATCACAAATCCCAATTAACCAAAGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTTTGAAAATTCCTAGTTTTTCCGATATTTTCTGTATTCATTGATCCCGTTGTTATACCGTTATATGTTATGAAAACGCGAAAATGCAGGCATCTTTTAAAAATCGGCAAGTAGCTGAAAAATTAGAAATTTTCAACAAATTCTGTTAATGCAATTTTTCAATCTAGGACGGTTGTATATCCTTTAAAACCTGTATTCCGAGTTAAACTGAACAATGACAATAATCCAAATTTTAAAAACCTGTTGTAACCGAAATATTTTCAGAACCCAACTGGAAATCTTCCTGGGCCCTCCACTAGAATACACCAGCGCAATTATACTGGAATTGATGACATGTGCTAATTTCCTGGTGATGGTCGGGTTTTGGTTTGATGATGGCTCTTGAACTTATATTTTAACTGATTGTAAATAAACAAACTACTTCTGCTTTTATCCGCAAATAATAATAATATGTTGTAACAGTAACTTCCATCAAGATTTTCAAAACTACGATTTTAAAAATTTATTATAATTACTTTTAATCACAAATCCCAATTAACCAAAGTTATCATAGAAATCAAATAAATAGGCGTATTGAAGTTGACACCGTCGGAAATCGTTTCTTCAGTGGCAGCAACCAATTTCGCTGGGCTTTCAAGAGCTAATTTGACAGGGTTTTCTGGAGCTGGAAGAGCGCACAGTCCATCTTGATTGATATATCCTTGAGTACATTTTGATCCGGGATCTCCTTTAGGAACCGGAAACGAGCTTCCAGTAACTCTGGAATCAAAAATTTCGTCTTCGTGTTATATAAAAAGTGCTCACTCTGGTTCAAAAACACACAAAGTATGAGTAGTCACCCTTTGGAAATTCACATGGAAATTTGGAGCACACCCGACCCGTTTCTGATGGGGGACAAGTTCTTCCATTCCGAGAATCCGCCATCGGGCTAAATTTTGGATCAATTCAGATGGATTACTTCCAAATCGTTCCCGAAATATTCTTTGCCTGGCGTTC</canonical>
            <polymorphic>AATTTTTTGAAAATTCCTAGTTTTTCCGATATTTTCTGTATTCATTGATCCCGTTGTTATACCGTTATATGTTATGAAAACGCGAAAATGCAGGCATCTTTTAAAAATCGGCAAGTAGCTGAAAAATTAGAAATTTTCAACAAATTCTGTTAATGCAATTTTTCAATCTAGGACGGTTGTATATCCTTTAAAACCTGTATTCCGAGTTAAACTGAACAATGACAATAATCCAAATTTTAAAAACCTGTTGTAACCGAAATATTTTCAGAACCCAACTGGAAATCTTCCTGGGCCCTCCACTAGAATACACCAGCGCAATTATACTGGAATTGATGACATGTGCTAATTTCCTGGTGATGGTCGGGTTTTGGTTTGATGATGGCTCTTGAACTTATATTTTAACTGATTGTAAATAAACAAACTACTTCTGCTTTTATCCGCAAATAATAATAATATGTTGTAACAGTAACTTCCATCAAGATTTTCAAAACTACGATTTWAAAAATTTATTATAATTACTTTTAATCACAAATCCCAATTAACCAAAGTTATCATAGAAATCAAATAAATAGGCGTATTGAAGTTGACACCGTCGGAAATCGTTTCTTCAGTGGCAGCAACCAATTTCGCTGGGCTTTCAAGAGCTAATTTGACAGGGTTTTCTGGAGCTGGAAGAGCGCACAGTCCATCTTGATTGATATATCCTTGAGTACATTTTGATCCGGGATCTCCTTTAGGAACCGGAAACGAGCTTCCAGTAACTCTGGAATCAAAAATTTCGTCTTCGTGTTATATAAAAAGTGCTCACTCTGGTTCAAAAACACACAAAGTATGAGTAGTCACCCTTTGGAAATTCACATGGAAATTTGGAGCACACCCGACCCGTTTCTGATGGGGGACAAGTTCTTCCATTCCGAGAATCCGCCATCGGGCTAAATTTTGGATCAATTCAGATGGATTACTTCCAAATCGTTCCCGAAATATTCTTTGCCTGGCGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 262 102 87 49</canonical_bands>
                <polymorphic_bands>762 102 87 49</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>461 162 101 100 49 38 30 23 19 17</canonical_bands>
                <polymorphic_bands>461 162 123 101 49 38 30 19 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAAACTACTTCTGCTTTTATCC</pcr_primer_p1>
		<pcr_primer_p2>AGAAAACCCTGTCAAATTAGC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACAAACTACTTCTGCTTTTATCCGCAAATAATAATAATATGTTGTAACAGTAACTTCCATCAAGATTTTCAAAACTACGATTTTAAAAATTTATTATAATTACTTTTAATCACAAATCCCAATTAACCAAAGTTATCATAGAAATCAAATAAATAGGCGTATTGAAGTTGACACCGTCGGAAATCGTTTCTTCAGTGGCAGCAACCAATTTCGCTGGGCTTTCAAGAGCTAATTTGACAGGGTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>AACAAACTACTTCTGCTTTTATCCGCAAATAATAATAATATGTTGTAACAGTAACTTCCATCAAGATTTTCAAAACTACGATTTWAAAAATTTATTATAATTACTTTTAATCACAAATCCCAATTAACCAAAGTTATCATAGAAATCAAATAAATAGGCGTATTGAAGTTGACACCGTCGGAAATCGTTTCTTCAGTGGCAGCAACCAATTTCGCTGGGCTTTCAAGAGCTAATTTGACAGGGTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35920</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>411675</contig_pos>
        <strand>+</strand>
        <context>taatCACAAA[A/T]CCCAATTAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCAAAACTACGATTTTAAAAATTTATTATAATTACTTTTAATCACAAA</left_flank>
        <right_flank>CCCAATTAACCAAAGTTATCATAGAAATCAAATAAATAGGCGTATTGAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGTATTCATTGATCCCGTTGTTATACCGTTATATGTTATGAAAACGCGAAAATGCAGGCATCTTTTAAAAATCGGCAAGTAGCTGAAAAATTAGAAATTTTCAACAAATTCTGTTAATGCAATTTTTCAATCTAGGACGGTTGTATATCCTTTAAAACCTGTATTCCGAGTTAAACTGAACAATGACAATAATCCAAATTTTAAAAACCTGTTGTAACCGAAATATTTTCAGAACCCAACTGGAAATCTTCCTGGGCCCTCCACTAGAATACACCAGCGCAATTATACTGGAATTGATGACATGTGCTAATTTCCTGGTGATGGTCGGGTTTTGGTTTGATGATGGCTCTTGAACTTATATTTTAACTGATTGTAAATAAACAAACTACTTCTGCTTTTATCCGCAAATAATAATAATATGTTGTAACAGTAACTTCCATCAAGATTTTCAAAACTACGATTTTAAAAATTTATTATAATTACTTTTAATCACAAATCCCAATTAACCAAAGTTATCATAGAAATCAAATAAATAGGCGTATTGAAGTTGACACCGTCGGAAATCGTTTCTTCAGTGGCAGCAACCAATTTCGCTGGGCTTTCAAGAGCTAATTTGACAGGGTTTTCTGGAGCTGGAAGAGCGCACAGTCCATCTTGATTGATATATCCTTGAGTACATTTTGATCCGGGATCTCCTTTAGGAACCGGAAACGAGCTTCCAGTAACTCTGGAATCAAAAATTTCGTCTTCGTGTTATATAAAAAGTGCTCACTCTGGTTCAAAAACACACAAAGTATGAGTAGTCACCCTTTGGAAATTCACATGGAAATTTGGAGCACACCCGACCCGTTTCTGATGGGGGACAAGTTCTTCCATTCCGAGAATCCGCCATCGGGCTAAATTTTGGATCAATTCAGATGGATTACTTCCAAATCGTTCCCGAAATATTCTTTGCCTGGCGTTCGGTCCACTCGTTTCCATCAATTCTGCCTGTCCT</canonical>
            <polymorphic>TTCTGTATTCATTGATCCCGTTGTTATACCGTTATATGTTATGAAAACGCGAAAATGCAGGCATCTTTTAAAAATCGGCAAGTAGCTGAAAAATTAGAAATTTTCAACAAATTCTGTTAATGCAATTTTTCAATCTAGGACGGTTGTATATCCTTTAAAACCTGTATTCCGAGTTAAACTGAACAATGACAATAATCCAAATTTTAAAAACCTGTTGTAACCGAAATATTTTCAGAACCCAACTGGAAATCTTCCTGGGCCCTCCACTAGAATACACCAGCGCAATTATACTGGAATTGATGACATGTGCTAATTTCCTGGTGATGGTCGGGTTTTGGTTTGATGATGGCTCTTGAACTTATATTTTAACTGATTGTAAATAAACAAACTACTTCTGCTTTTATCCGCAAATAATAATAATATGTTGTAACAGTAACTTCCATCAAGATTTTCAAAACTACGATTTTAAAAATTTATTATAATTACTTTTAATCACAAAWCCCAATTAACCAAAGTTATCATAGAAATCAAATAAATAGGCGTATTGAAGTTGACACCGTCGGAAATCGTTTCTTCAGTGGCAGCAACCAATTTCGCTGGGCTTTCAAGAGCTAATTTGACAGGGTTTTCTGGAGCTGGAAGAGCGCACAGTCCATCTTGATTGATATATCCTTGAGTACATTTTGATCCGGGATCTCCTTTAGGAACCGGAAACGAGCTTCCAGTAACTCTGGAATCAAAAATTTCGTCTTCGTGTTATATAAAAAGTGCTCACTCTGGTTCAAAAACACACAAAGTATGAGTAGTCACCCTTTGGAAATTCACATGGAAATTTGGAGCACACCCGACCCGTTTCTGATGGGGGACAAGTTCTTCCATTCCGAGAATCCGCCATCGGGCTAAATTTTGGATCAATTCAGATGGATTACTTCCAAATCGTTCCCGAAATATTCTTTGCCTGGCGTTCGGTCCACTCGTTTCCATCAATTCTGCCTGTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCATCAAGATTTTCAAAACTAC</pcr_primer_p1>
		<pcr_primer_p2>GGATCAAAATGTACTCAAGGATA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCCATCAAGATTTTCAAAACTACGATTTTAAAAATTTATTATAATTACTTTTAATCACAAATCCCAATTAACCAAAGTTATCATAGAAATCAAATAAATAGGCGTATTGAAGTTGACACCGTCGGAAATCGTTTCTTCAGTGGCAGCAACCAATTTCGCTGGGCTTTCAAGAGCTAATTTGACAGGGTTTTCTGGAGCTGGAAGAGCGCACAGTCCATCTTGATTGATATATCCTTGAGTACATTTTGATCC</canonical_amplicon>
		<polymorphic_amplicon>TCCATCAAGATTTTCAAAACTACGATTTTAAAAATTTATTATAATTACTTTTAATCACAAAWCCCAATTAACCAAAGTTATCATAGAAATCAAATAAATAGGCGTATTGAAGTTGACACCGTCGGAAATCGTTTCTTCAGTGGCAGCAACCAATTTCGCTGGGCTTTCAAGAGCTAATTTGACAGGGTTTTCTGGAGCTGGAAGAGCGCACAGTCCATCTTGATTGATATATCCTTGAGTACATTTTGATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35921</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>411704</contig_pos>
        <strand>+</strand>
        <context>TCATAGAAAT[A/C]AAATAAATAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATAATTACTTTTAATCACAAATCCCAATTAACCAAAGTTATCATAGAAAT</left_flank>
        <right_flank>AAATAAATAGGCGTATTGAAGTTGACACCGTCGGAAATCGTTTCTTCAGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTTATATGTTATGAAAACGCGAAAATGCAGGCATCTTTTAAAAATCGGCAAGTAGCTGAAAAATTAGAAATTTTCAACAAATTCTGTTAATGCAATTTTTCAATCTAGGACGGTTGTATATCCTTTAAAACCTGTATTCCGAGTTAAACTGAACAATGACAATAATCCAAATTTTAAAAACCTGTTGTAACCGAAATATTTTCAGAACCCAACTGGAAATCTTCCTGGGCCCTCCACTAGAATACACCAGCGCAATTATACTGGAATTGATGACATGTGCTAATTTCCTGGTGATGGTCGGGTTTTGGTTTGATGATGGCTCTTGAACTTATATTTTAACTGATTGTAAATAAACAAACTACTTCTGCTTTTATCCGCAAATAATAATAATATGTTGTAACAGTAACTTCCATCAAGATTTTCAAAACTACGATTTTAAAAATTTATTATAATTACTTTTAATCACAAATCCCAATTAACCAAAGTTATCATAGAAATCAAATAAATAGGCGTATTGAAGTTGACACCGTCGGAAATCGTTTCTTCAGTGGCAGCAACCAATTTCGCTGGGCTTTCAAGAGCTAATTTGACAGGGTTTTCTGGAGCTGGAAGAGCGCACAGTCCATCTTGATTGATATATCCTTGAGTACATTTTGATCCGGGATCTCCTTTAGGAACCGGAAACGAGCTTCCAGTAACTCTGGAATCAAAAATTTCGTCTTCGTGTTATATAAAAAGTGCTCACTCTGGTTCAAAAACACACAAAGTATGAGTAGTCACCCTTTGGAAATTCACATGGAAATTTGGAGCACACCCGACCCGTTTCTGATGGGGGACAAGTTCTTCCATTCCGAGAATCCGCCATCGGGCTAAATTTTGGATCAATTCAGATGGATTACTTCCAAATCGTTCCCGAAATATTCTTTGCCTGGCGTTCGGTCCACTCGTTTCCATCAATTCTGCCTGTCCTCATCGGTTTTTTGTCATTGGCGAAGTCTT</canonical>
            <polymorphic>CGTTATATGTTATGAAAACGCGAAAATGCAGGCATCTTTTAAAAATCGGCAAGTAGCTGAAAAATTAGAAATTTTCAACAAATTCTGTTAATGCAATTTTTCAATCTAGGACGGTTGTATATCCTTTAAAACCTGTATTCCGAGTTAAACTGAACAATGACAATAATCCAAATTTTAAAAACCTGTTGTAACCGAAATATTTTCAGAACCCAACTGGAAATCTTCCTGGGCCCTCCACTAGAATACACCAGCGCAATTATACTGGAATTGATGACATGTGCTAATTTCCTGGTGATGGTCGGGTTTTGGTTTGATGATGGCTCTTGAACTTATATTTTAACTGATTGTAAATAAACAAACTACTTCTGCTTTTATCCGCAAATAATAATAATATGTTGTAACAGTAACTTCCATCAAGATTTTCAAAACTACGATTTTAAAAATTTATTATAATTACTTTTAATCACAAATCCCAATTAACCAAAGTTATCATAGAAATMAAATAAATAGGCGTATTGAAGTTGACACCGTCGGAAATCGTTTCTTCAGTGGCAGCAACCAATTTCGCTGGGCTTTCAAGAGCTAATTTGACAGGGTTTTCTGGAGCTGGAAGAGCGCACAGTCCATCTTGATTGATATATCCTTGAGTACATTTTGATCCGGGATCTCCTTTAGGAACCGGAAACGAGCTTCCAGTAACTCTGGAATCAAAAATTTCGTCTTCGTGTTATATAAAAAGTGCTCACTCTGGTTCAAAAACACACAAAGTATGAGTAGTCACCCTTTGGAAATTCACATGGAAATTTGGAGCACACCCGACCCGTTTCTGATGGGGGACAAGTTCTTCCATTCCGAGAATCCGCCATCGGGCTAAATTTTGGATCAATTCAGATGGATTACTTCCAAATCGTTCCCGAAATATTCTTTGCCTGGCGTTCGGTCCACTCGTTTCCATCAATTCTGCCTGTCCTCATCGGTTTTTTGTCATTGGCGAAGTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCATCAAGATTTTCAAAACTAC</pcr_primer_p1>
		<pcr_primer_p2>GGATCAAAATGTACTCAAGGATA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCCATCAAGATTTTCAAAACTACGATTTTAAAAATTTATTATAATTACTTTTAATCACAAATCCCAATTAACCAAAGTTATCATAGAAATCAAATAAATAGGCGTATTGAAGTTGACACCGTCGGAAATCGTTTCTTCAGTGGCAGCAACCAATTTCGCTGGGCTTTCAAGAGCTAATTTGACAGGGTTTTCTGGAGCTGGAAGAGCGCACAGTCCATCTTGATTGATATATCCTTGAGTACATTTTGATCC</canonical_amplicon>
		<polymorphic_amplicon>TCCATCAAGATTTTCAAAACTACGATTTTAAAAATTTATTATAATTACTTTTAATCACAAATCCCAATTAACCAAAGTTATCATAGAAATMAAATAAATAGGCGTATTGAAGTTGACACCGTCGGAAATCGTTTCTTCAGTGGCAGCAACCAATTTCGCTGGGCTTTCAAGAGCTAATTTGACAGGGTTTTCTGGAGCTGGAAGAGCGCACAGTCCATCTTGATTGATATATCCTTGAGTACATTTTGATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35922</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>411886</contig_pos>
        <strand>+</strand>
        <context>TTAGGAACCG[A/G]AAACGAGCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGATATATCCTTGAGTACATTTTGATCCGGGATCTCCTTTAGGAACCG</left_flank>
        <right_flank>AAACGAGCTTCCAGTAACTCTGGAATCAAAAATTTCGTCTTCGTGTTATA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTTGTAACCGAAATATTTTCAGAACCCAACTGGAAATCTTCCTGGGCCCTCCACTAGAATACACCAGCGCAATTATACTGGAATTGATGACATGTGCTAATTTCCTGGTGATGGTCGGGTTTTGGTTTGATGATGGCTCTTGAACTTATATTTTAACTGATTGTAAATAAACAAACTACTTCTGCTTTTATCCGCAAATAATAATAATATGTTGTAACAGTAACTTCCATCAAGATTTTCAAAACTACGATTTTAAAAATTTATTATAATTACTTTTAATCACAAATCCCAATTAACCAAAGTTATCATAGAAATCAAATAAATAGGCGTATTGAAGTTGACACCGTCGGAAATCGTTTCTTCAGTGGCAGCAACCAATTTCGCTGGGCTTTCAAGAGCTAATTTGACAGGGTTTTCTGGAGCTGGAAGAGCGCACAGTCCATCTTGATTGATATATCCTTGAGTACATTTTGATCCGGGATCTCCTTTAGGAACCGGAAACGAGCTTCCAGTAACTCTGGAATCAAAAATTTCGTCTTCGTGTTATATAAAAAGTGCTCACTCTGGTTCAAAAACACACAAAGTATGAGTAGTCACCCTTTGGAAATTCACATGGAAATTTGGAGCACACCCGACCCGTTTCTGATGGGGGACAAGTTCTTCCATTCCGAGAATCCGCCATCGGGCTAAATTTTGGATCAATTCAGATGGATTACTTCCAAATCGTTCCCGAAATATTCTTTGCCTGGCGTTCGGTCCACTCGTTTCCATCAATTCTGCCTGTCCTCATCGGTTTTTTGTCATTGGCGAAGTCTTGGGTTTGTGCACGGTACTCTAAAAAGAGCCTTTCAGTTGGTCCGTTTTATAATCATTGTATGTTTGTTGCTTTAAAAATATATATAATAAATTGTATTGAAATTTGACTGTGTGTTCACATATTGTCGGAAACATTTTCTATTTTTCTCCGGTTTCCTTGTTTTAAAAAAATTCCCAAACAA</canonical>
            <polymorphic>CTGTTGTAACCGAAATATTTTCAGAACCCAACTGGAAATCTTCCTGGGCCCTCCACTAGAATACACCAGCGCAATTATACTGGAATTGATGACATGTGCTAATTTCCTGGTGATGGTCGGGTTTTGGTTTGATGATGGCTCTTGAACTTATATTTTAACTGATTGTAAATAAACAAACTACTTCTGCTTTTATCCGCAAATAATAATAATATGTTGTAACAGTAACTTCCATCAAGATTTTCAAAACTACGATTTTAAAAATTTATTATAATTACTTTTAATCACAAATCCCAATTAACCAAAGTTATCATAGAAATCAAATAAATAGGCGTATTGAAGTTGACACCGTCGGAAATCGTTTCTTCAGTGGCAGCAACCAATTTCGCTGGGCTTTCAAGAGCTAATTTGACAGGGTTTTCTGGAGCTGGAAGAGCGCACAGTCCATCTTGATTGATATATCCTTGAGTACATTTTGATCCGGGATCTCCTTTAGGAACCGRAAACGAGCTTCCAGTAACTCTGGAATCAAAAATTTCGTCTTCGTGTTATATAAAAAGTGCTCACTCTGGTTCAAAAACACACAAAGTATGAGTAGTCACCCTTTGGAAATTCACATGGAAATTTGGAGCACACCCGACCCGTTTCTGATGGGGGACAAGTTCTTCCATTCCGAGAATCCGCCATCGGGCTAAATTTTGGATCAATTCAGATGGATTACTTCCAAATCGTTCCCGAAATATTCTTTGCCTGGCGTTCGGTCCACTCGTTTCCATCAATTCTGCCTGTCCTCATCGGTTTTTTGTCATTGGCGAAGTCTTGGGTTTGTGCACGGTACTCTAAAAAGAGCCTTTCAGTTGGTCCGTTTTATAATCATTGTATGTTTGTTGCTTTAAAAATATATATAATAAATTGTATTGAAATTTGACTGTGTGTTCACATATTGTCGGAAACATTTTCTATTTTTCTCCGGTTTCCTTGTTTTAAAAAAATTCCCAAACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>496 470 34</canonical_bands>
                <polymorphic_bands>966 34</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>478 470 33 19</canonical_bands>
                <polymorphic_bands>489 478 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAATAGGCGTATTGAAGTTGAC</pcr_primer_p1>
		<pcr_primer_p2>AACCAGAGTGAGCACTTTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAATAGGCGTATTGAAGTTGACACCGTCGGAAATCGTTTCTTCAGTGGCAGCAACCAATTTCGCTGGGCTTTCAAGAGCTAATTTGACAGGGTTTTCTGGAGCTGGAAGAGCGCACAGTCCATCTTGATTGATATATCCTTGAGTACATTTTGATCCGGGATCTCCTTTAGGAACCGGAAACGAGCTTCCAGTAACTCTGGAATCAAAAATTTCGTCTTCGTGTTATATAAAAAGTGCTCACTCTGGTT</canonical_amplicon>
		<polymorphic_amplicon>TAAATAGGCGTATTGAAGTTGACACCGTCGGAAATCGTTTCTTCAGTGGCAGCAACCAATTTCGCTGGGCTTTCAAGAGCTAATTTGACAGGGTTTTCTGGAGCTGGAAGAGCGCACAGTCCATCTTGATTGATATATCCTTGAGTACATTTTGATCCGGGATCTCCTTTAGGAACCGRAAACGAGCTTCCAGTAACTCTGGAATCAAAAATTTCGTCTTCGTGTTATATAAAAAGTGCTCACTCTGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35923</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>411902</contig_pos>
        <strand>+</strand>
        <context>AGCTTCCAGT[A/G]RCTCTGGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTACATTTTGATCCGGGATCTCCTTTAGGAACCGGAAACGAGCTTCCAGT</left_flank>
        <right_flank>ACTCTGGAATCAAAAATTTCGTCTTCGTGTTATATAAAAAGTGCTCACTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTCAGAACCCAACTGGAAATCTTCCTGGGCCCTCCACTAGAATACACCAGCGCAATTATACTGGAATTGATGACATGTGCTAATTTCCTGGTGATGGTCGGGTTTTGGTTTGATGATGGCTCTTGAACTTATATTTTAACTGATTGTAAATAAACAAACTACTTCTGCTTTTATCCGCAAATAATAATAATATGTTGTAACAGTAACTTCCATCAAGATTTTCAAAACTACGATTTTAAAAATTTATTATAATTACTTTTAATCACAAATCCCAATTAACCAAAGTTATCATAGAAATCAAATAAATAGGCGTATTGAAGTTGACACCGTCGGAAATCGTTTCTTCAGTGGCAGCAACCAATTTCGCTGGGCTTTCAAGAGCTAATTTGACAGGGTTTTCTGGAGCTGGAAGAGCGCACAGTCCATCTTGATTGATATATCCTTGAGTACATTTTGATCCGGGATCTCCTTTAGGAACCGGAAACGAGCTTCCAGTAACTCTGGAATCAAAAATTTCGTCTTCGTGTTATATAAAAAGTGCTCACTCTGGTTCAAAAACACACAAAGTATGAGTAGTCACCCTTTGGAAATTCACATGGAAATTTGGAGCACACCCGACCCGTTTCTGATGGGGGACAAGTTCTTCCATTCCGAGAATCCGCCATCGGGCTAAATTTTGGATCAATTCAGATGGATTACTTCCAAATCGTTCCCGAAATATTCTTTGCCTGGCGTTCGGTCCACTCGTTTCCATCAATTCTGCCTGTCCTCATCGGTTTTTTGTCATTGGCGAAGTCTTGGGTTTGTGCACGGTACTCTAAAAAGAGCCTTTCAGTTGGTCCGTTTTATAATCATTGTATGTTTGTTGCTTTAAAAATATATATAATAAATTGTATTGAAATTTGACTGTGTGTTCACATATTGTCGGAAACATTTTCTATTTTTCTCCGGTTTCCTTGTTTTAAAAAAATTCCCAAACAATTTTTTTCCGTAAATC</canonical>
            <polymorphic>ATTTTCAGAACCCAACTGGAAATCTTCCTGGGCCCTCCACTAGAATACACCAGCGCAATTATACTGGAATTGATGACATGTGCTAATTTCCTGGTGATGGTCGGGTTTTGGTTTGATGATGGCTCTTGAACTTATATTTTAACTGATTGTAAATAAACAAACTACTTCTGCTTTTATCCGCAAATAATAATAATATGTTGTAACAGTAACTTCCATCAAGATTTTCAAAACTACGATTTTAAAAATTTATTATAATTACTTTTAATCACAAATCCCAATTAACCAAAGTTATCATAGAAATCAAATAAATAGGCGTATTGAAGTTGACACCGTCGGAAATCGTTTCTTCAGTGGCAGCAACCAATTTCGCTGGGCTTTCAAGAGCTAATTTGACAGGGTTTTCTGGAGCTGGAAGAGCGCACAGTCCATCTTGATTGATATATCCTTGAGTACATTTTGATCCGGGATCTCCTTTAGGAACCGGAAACGAGCTTCCAGTRACTCTGGAATCAAAAATTTCGTCTTCGTGTTATATAAAAAGTGCTCACTCTGGTTCAAAAACACACAAAGTATGAGTAGTCACCCTTTGGAAATTCACATGGAAATTTGGAGCACACCCGACCCGTTTCTGATGGGGGACAAGTTCTTCCATTCCGAGAATCCGCCATCGGGCTAAATTTTGGATCAATTCAGATGGATTACTTCCAAATCGTTCCCGAAATATTCTTTGCCTGGCGTTCGGTCCACTCGTTTCCATCAATTCTGCCTGTCCTCATCGGTTTTTTGTCATTGGCGAAGTCTTGGGTTTGTGCACGGTACTCTAAAAAGAGCCTTTCAGTTGGTCCGTTTTATAATCATTGTATGTTTGTTGCTTTAAAAATATATATAATAAATTGTATTGAAATTTGACTGTGTGTTCACATATTGTCGGAAACATTTTCTATTTTTCTCCGGTTTCCTTGTTTTAAAAAAATTCCCAAACAATTTTTTTCCGTAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATAGGCGTATTGAAGTTGAC</pcr_primer_p1>
		<pcr_primer_p2>AACCAGAGTGAGCACTTTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAATAGGCGTATTGAAGTTGACACCGTCGGAAATCGTTTCTTCAGTGGCAGCAACCAATTTCGCTGGGCTTTCAAGAGCTAATTTGACAGGGTTTTCTGGAGCTGGAAGAGCGCACAGTCCATCTTGATTGATATATCCTTGAGTACATTTTGATCCGGGATCTCCTTTAGGAACCGGAAACGAGCTTCCAGTAACTCTGGAATCAAAAATTTCGTCTTCGTGTTATATAAAAAGTGCTCACTCTGGTT</canonical_amplicon>
		<polymorphic_amplicon>TAAATAGGCGTATTGAAGTTGACACCGTCGGAAATCGTTTCTTCAGTGGCAGCAACCAATTTCGCTGGGCTTTCAAGAGCTAATTTGACAGGGTTTTCTGGAGCTGGAAGAGCGCACAGTCCATCTTGATTGATATATCCTTGAGTACATTTTGATCCGGGATCTCCTTTAGGAACCGGAAACGAGCTTCCAGTRACTCTGGAATCAAAAATTTCGTCTTCGTGTTATATAAAAAGTGCTCACTCTGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35924</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>411903</contig_pos>
        <strand>+</strand>
        <context>GCTTCCAGTR[A/G]CTCTGGAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACATTTTGATCCGGGATCTCCTTTAGGAACCGGAAACGAGCTTCCAGTA</left_flank>
        <right_flank>CTCTGGAATCAAAAATTTCGTCTTCGTGTTATATAAAAAGTGCTCACTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCAGAACCCAACTGGAAATCTTCCTGGGCCCTCCACTAGAATACACCAGCGCAATTATACTGGAATTGATGACATGTGCTAATTTCCTGGTGATGGTCGGGTTTTGGTTTGATGATGGCTCTTGAACTTATATTTTAACTGATTGTAAATAAACAAACTACTTCTGCTTTTATCCGCAAATAATAATAATATGTTGTAACAGTAACTTCCATCAAGATTTTCAAAACTACGATTTTAAAAATTTATTATAATTACTTTTAATCACAAATCCCAATTAACCAAAGTTATCATAGAAATCAAATAAATAGGCGTATTGAAGTTGACACCGTCGGAAATCGTTTCTTCAGTGGCAGCAACCAATTTCGCTGGGCTTTCAAGAGCTAATTTGACAGGGTTTTCTGGAGCTGGAAGAGCGCACAGTCCATCTTGATTGATATATCCTTGAGTACATTTTGATCCGGGATCTCCTTTAGGAACCGGAAACGAGCTTCCAGTAACTCTGGAATCAAAAATTTCGTCTTCGTGTTATATAAAAAGTGCTCACTCTGGTTCAAAAACACACAAAGTATGAGTAGTCACCCTTTGGAAATTCACATGGAAATTTGGAGCACACCCGACCCGTTTCTGATGGGGGACAAGTTCTTCCATTCCGAGAATCCGCCATCGGGCTAAATTTTGGATCAATTCAGATGGATTACTTCCAAATCGTTCCCGAAATATTCTTTGCCTGGCGTTCGGTCCACTCGTTTCCATCAATTCTGCCTGTCCTCATCGGTTTTTTGTCATTGGCGAAGTCTTGGGTTTGTGCACGGTACTCTAAAAAGAGCCTTTCAGTTGGTCCGTTTTATAATCATTGTATGTTTGTTGCTTTAAAAATATATATAATAAATTGTATTGAAATTTGACTGTGTGTTCACATATTGTCGGAAACATTTTCTATTTTTCTCCGGTTTCCTTGTTTTAAAAAAATTCCCAAACAATTTTTTTCCGTAAATCA</canonical>
            <polymorphic>TTTTCAGAACCCAACTGGAAATCTTCCTGGGCCCTCCACTAGAATACACCAGCGCAATTATACTGGAATTGATGACATGTGCTAATTTCCTGGTGATGGTCGGGTTTTGGTTTGATGATGGCTCTTGAACTTATATTTTAACTGATTGTAAATAAACAAACTACTTCTGCTTTTATCCGCAAATAATAATAATATGTTGTAACAGTAACTTCCATCAAGATTTTCAAAACTACGATTTTAAAAATTTATTATAATTACTTTTAATCACAAATCCCAATTAACCAAAGTTATCATAGAAATCAAATAAATAGGCGTATTGAAGTTGACACCGTCGGAAATCGTTTCTTCAGTGGCAGCAACCAATTTCGCTGGGCTTTCAAGAGCTAATTTGACAGGGTTTTCTGGAGCTGGAAGAGCGCACAGTCCATCTTGATTGATATATCCTTGAGTACATTTTGATCCGGGATCTCCTTTAGGAACCGGAAACGAGCTTCCAGTARCTCTGGAATCAAAAATTTCGTCTTCGTGTTATATAAAAAGTGCTCACTCTGGTTCAAAAACACACAAAGTATGAGTAGTCACCCTTTGGAAATTCACATGGAAATTTGGAGCACACCCGACCCGTTTCTGATGGGGGACAAGTTCTTCCATTCCGAGAATCCGCCATCGGGCTAAATTTTGGATCAATTCAGATGGATTACTTCCAAATCGTTCCCGAAATATTCTTTGCCTGGCGTTCGGTCCACTCGTTTCCATCAATTCTGCCTGTCCTCATCGGTTTTTTGTCATTGGCGAAGTCTTGGGTTTGTGCACGGTACTCTAAAAAGAGCCTTTCAGTTGGTCCGTTTTATAATCATTGTATGTTTGTTGCTTTAAAAATATATATAATAAATTGTATTGAAATTTGACTGTGTGTTCACATATTGTCGGAAACATTTTCTATTTTTCTCCGGTTTCCTTGTTTTAAAAAAATTCCCAAACAATTTTTTTCCGTAAATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>423 292 198 81 6</canonical_bands>
                <polymorphic_bands>423 373 198 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAATAGGCGTATTGAAGTTGAC</pcr_primer_p1>
		<pcr_primer_p2>AACCAGAGTGAGCACTTTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAATAGGCGTATTGAAGTTGACACCGTCGGAAATCGTTTCTTCAGTGGCAGCAACCAATTTCGCTGGGCTTTCAAGAGCTAATTTGACAGGGTTTTCTGGAGCTGGAAGAGCGCACAGTCCATCTTGATTGATATATCCTTGAGTACATTTTGATCCGGGATCTCCTTTAGGAACCGGAAACGAGCTTCCAGTAACTCTGGAATCAAAAATTTCGTCTTCGTGTTATATAAAAAGTGCTCACTCTGGTT</canonical_amplicon>
		<polymorphic_amplicon>TAAATAGGCGTATTGAAGTTGACACCGTCGGAAATCGTTTCTTCAGTGGCAGCAACCAATTTCGCTGGGCTTTCAAGAGCTAATTTGACAGGGTTTTCTGGAGCTGGAAGAGCGCACAGTCCATCTTGATTGATATATCCTTGAGTACATTTTGATCCGGGATCTCCTTTAGGAACCGGAAACGAGCTTCCAGTARCTCTGGAATCAAAAATTTCGTCTTCGTGTTATATAAAAAGTGCTCACTCTGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35925</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>416279</contig_pos>
        <strand>+</strand>
        <context>GCAACAGCAG[C/T]CAACRCTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGTGACTACAAACCGCTAAGTGACAATTTGACGATTGTGCAACAGCAG</left_flank>
        <right_flank>CAACACTTTGGGAGCATGTGACGAATACTGAAATTCATGGATACTCGGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCTTCCTCTCCACTTCGGACCTCTCCAGATTTGTCAAAACTTTGAAAGATAAAGCATTCCGCCCATTGGAGTTCTCTATTATCCATGTGGATTGTTATAAGTAAGTTTTACAGATATAATCGTCTTCAATTTATTGCTACACTGTTTTGATTTTTGTTTAACTGAAATCTATAACTTTTTAGAAGTGAAACCACCGAATTCTACACTCATCTAGACCAGAAGGCATCAGAGGAGACGAATCCTATCTCTGCAGCACGTCTTCGAAAGTTACATCGTCATGTGGCACTTCTCAGGAATTCACACGATGATAAGGGGAATATGGAGGAGTTTGCAACCAAGCATGGGATGATAGTAATTTTTTTTGTCTTTCCCTTCCCCAAACCCTCTGCTTCCAGCCATCCCACACCCTGTACAAAGCCCTAATCTTATGTGATGGTCTCCAGCTTCTCAGTGACTACAAACCGCTAAGTGACAATTTGACGATTGTGCAACAGCAGCCAACACTTTGGGAGCATGTGACGAATACTGAAATTCATGGATACTCGGGACCAATGTTTATTGGAAGTGATGGAGTACGACTACCGTACTACGAGATGTTCATGTGGAGAGATGGGAAGACACAACACGTGGCAAGTGTAAGACCCAGAGAGTCCGAGTTTTGTGAGAAGGAGAAGATGAGCAATGAGAGCAAGAATTGTTATGTGAGTTTTTTGAACAACCTCTGTTTCAAGTTTTTGAGAAGGAGAAAGCTAGAACTAAGTTTTTTGTTGAAATGTATGTTGATTTCGTAAATGATAATGACTGTAAATCTGTTTTGCATGGATATGGGAATAATTGCATAGCATTCAAAACATGGAGAAAATAAATAAATTTTCACAAGTTTTAGAACATTTCTCACTTACTGAATGATCATATACAGTAACTGTCGCTAAGATATAAAAAAACGTATTTTTCAGTGTATTATCGGTCACTTTGACCATCTTCAAGGATCTAGAGCT</canonical>
            <polymorphic>CTCCTTCCTCTCCACTTCGGACCTCTCCAGATTTGTCAAAACTTTGAAAGATAAAGCATTCCGCCCATTGGAGTTCTCTATTATCCATGTGGATTGTTATAAGTAAGTTTTACAGATATAATCGTCTTCAATTTATTGCTACACTGTTTTGATTTTTGTTTAACTGAAATCTATAACTTTTTAGAAGTGAAACCACCGAATTCTACACTCATCTAGACCAGAAGGCATCAGAGGAGACGAATCCTATCTCTGCAGCACGTCTTCGAAAGTTACATCGTCATGTGGCACTTCTCAGGAATTCACACGATGATAAGGGGAATATGGAGGAGTTTGCAACCAAGCATGGGATGATAGTAATTTTTTTTGTCTTTCCCTTCCCCAAACCCTCTGCTTCCAGCCATCCCACACCCTGTACAAAGCCCTAATCTTATGTGATGGTCTCCAGCTTCTCAGTGACTACAAACCGCTAAGTGACAATTTGACGATTGTGCAACAGCAGYCAACACTTTGGGAGCATGTGACGAATACTGAAATTCATGGATACTCGGGACCAATGTTTATTGGAAGTGATGGAGTACGACTACCGTACTACGAGATGTTCATGTGGAGAGATGGGAAGACACAACACGTGGCAAGTGTAAGACCCAGAGAGTCCGAGTTTTGTGAGAAGGAGAAGATGAGCAATGAGAGCAAGAATTGTTATGTGAGTTTTTTGAACAACCTCTGTTTCAAGTTTTTGAGAAGGAGAAAGCTAGAACTAAGTTTTTTGTTGAAATGTATGTTGATTTCGTAAATGATAATGACTGTAAATCTGTTTTGCATGGATATGGGAATAATTGCATAGCATTCAAAACATGGAGAAAATAAATAAATTTTCACAAGTTTTAGAACATTTCTCACTTACTGAATGATCATATACAGTAACTGTCGCTAAGATATAAAAAAACGTATTTTTCAGTGTATTATCGGTCACTTTGACCATCTTCAAGGATCTAGAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>496 313 191</canonical_bands>
                <polymorphic_bands>687 313</polymorphic_bands>
            </assay>
            <assay>
                <site>CCANNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>BstXI</enzyme>
                </isoschizomers>
                <canonical_bands>507 493</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>501 255 244</canonical_bands>
                <polymorphic_bands>745 255</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>397 252 247 54 26 22 2</canonical_bands>
                <polymorphic_bands>397 306 247 26 22 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>504 252 244</canonical_bands>
                <polymorphic_bands>748 252</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTGTACAAAGCCCTAATCTTAT</pcr_primer_p1>
		<pcr_primer_p2>GACTCTCTGGGTCTTACACTTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CCTGTACAAAGCCCTAATCTTATGTGATGGTCTCCAGCTTCTCAGTGACTACAAACCGCTAAGTGACAATTTGACGATTGTGCAACAGCAGCCAACACTTTGGGAGCATGTGACGAATACTGAAATTCATGGATACTCGGGACCAATGTTTATTGGAAGTGATGGAGTACGACTACCGTACTACGAGATGTTCATGTGGAGAGATGGGAAGACACAACACGTGGCAAGTGTAAGACCCAGAGAGTC</canonical_amplicon>
		<polymorphic_amplicon>CCTGTACAAAGCCCTAATCTTATGTGATGGTCTCCAGCTTCTCAGTGACTACAAACCGCTAAGTGACAATTTGACGATTGTGCAACAGCAGYCAACACTTTGGGAGCATGTGACGAATACTGAAATTCATGGATACTCGGGACCAATGTTTATTGGAAGTGATGGAGTACGACTACCGTACTACGAGATGTTCATGTGGAGAGATGGGAAGACACAACACGTGGCAAGTGTAAGACCCAGAGAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35926</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>416284</contig_pos>
        <strand>+</strand>
        <context>AGCAGYCAAC[A/G]CTTTGGGAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACTACAAACCGCTAAGTGACAATTTGACGATTGTGCAACAGCAGCCAAC</left_flank>
        <right_flank>CTTTGGGAGCATGTGACGAATACTGAAATTCATGGATACTCGGGACCAAT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTCTCCACTTCGGACCTCTCCAGATTTGTCAAAACTTTGAAAGATAAAGCATTCCGCCCATTGGAGTTCTCTATTATCCATGTGGATTGTTATAAGTAAGTTTTACAGATATAATCGTCTTCAATTTATTGCTACACTGTTTTGATTTTTGTTTAACTGAAATCTATAACTTTTTAGAAGTGAAACCACCGAATTCTACACTCATCTAGACCAGAAGGCATCAGAGGAGACGAATCCTATCTCTGCAGCACGTCTTCGAAAGTTACATCGTCATGTGGCACTTCTCAGGAATTCACACGATGATAAGGGGAATATGGAGGAGTTTGCAACCAAGCATGGGATGATAGTAATTTTTTTTGTCTTTCCCTTCCCCAAACCCTCTGCTTCCAGCCATCCCACACCCTGTACAAAGCCCTAATCTTATGTGATGGTCTCCAGCTTCTCAGTGACTACAAACCGCTAAGTGACAATTTGACGATTGTGCAACAGCAGCCAACACTTTGGGAGCATGTGACGAATACTGAAATTCATGGATACTCGGGACCAATGTTTATTGGAAGTGATGGAGTACGACTACCGTACTACGAGATGTTCATGTGGAGAGATGGGAAGACACAACACGTGGCAAGTGTAAGACCCAGAGAGTCCGAGTTTTGTGAGAAGGAGAAGATGAGCAATGAGAGCAAGAATTGTTATGTGAGTTTTTTGAACAACCTCTGTTTCAAGTTTTTGAGAAGGAGAAAGCTAGAACTAAGTTTTTTGTTGAAATGTATGTTGATTTCGTAAATGATAATGACTGTAAATCTGTTTTGCATGGATATGGGAATAATTGCATAGCATTCAAAACATGGAGAAAATAAATAAATTTTCACAAGTTTTAGAACATTTCTCACTTACTGAATGATCATATACAGTAACTGTCGCTAAGATATAAAAAAACGTATTTTTCAGTGTATTATCGGTCACTTTGACCATCTTCAAGGATCTAGAGCTCGTCT</canonical>
            <polymorphic>TCCTCTCCACTTCGGACCTCTCCAGATTTGTCAAAACTTTGAAAGATAAAGCATTCCGCCCATTGGAGTTCTCTATTATCCATGTGGATTGTTATAAGTAAGTTTTACAGATATAATCGTCTTCAATTTATTGCTACACTGTTTTGATTTTTGTTTAACTGAAATCTATAACTTTTTAGAAGTGAAACCACCGAATTCTACACTCATCTAGACCAGAAGGCATCAGAGGAGACGAATCCTATCTCTGCAGCACGTCTTCGAAAGTTACATCGTCATGTGGCACTTCTCAGGAATTCACACGATGATAAGGGGAATATGGAGGAGTTTGCAACCAAGCATGGGATGATAGTAATTTTTTTTGTCTTTCCCTTCCCCAAACCCTCTGCTTCCAGCCATCCCACACCCTGTACAAAGCCCTAATCTTATGTGATGGTCTCCAGCTTCTCAGTGACTACAAACCGCTAAGTGACAATTTGACGATTGTGCAACAGCAGCCAACRCTTTGGGAGCATGTGACGAATACTGAAATTCATGGATACTCGGGACCAATGTTTATTGGAAGTGATGGAGTACGACTACCGTACTACGAGATGTTCATGTGGAGAGATGGGAAGACACAACACGTGGCAAGTGTAAGACCCAGAGAGTCCGAGTTTTGTGAGAAGGAGAAGATGAGCAATGAGAGCAAGAATTGTTATGTGAGTTTTTTGAACAACCTCTGTTTCAAGTTTTTGAGAAGGAGAAAGCTAGAACTAAGTTTTTTGTTGAAATGTATGTTGATTTCGTAAATGATAATGACTGTAAATCTGTTTTGCATGGATATGGGAATAATTGCATAGCATTCAAAACATGGAGAAAATAAATAAATTTTCACAAGTTTTAGAACATTTCTCACTTACTGAATGATCATATACAGTAACTGTCGCTAAGATATAAAAAAACGTATTTTTCAGTGTATTATCGGTCACTTTGACCATCTTCAAGGATCTAGAGCTCGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>172 101 77 61 52 50 49 46 41 37 33 27 27 27 21 21 18 17 16 15 15 15 12 12 9 7 6 5 4 3 2 2</canonical_bands>
                <polymorphic_bands>172 101 77 61 52 50 49 46 41 37 33 30 27 27 27 21 21 18 17 16 15 12 12 9 7 6 5 4 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTGTACAAAGCCCTAATCTTAT</pcr_primer_p1>
		<pcr_primer_p2>GACTCTCTGGGTCTTACACTTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CCTGTACAAAGCCCTAATCTTATGTGATGGTCTCCAGCTTCTCAGTGACTACAAACCGCTAAGTGACAATTTGACGATTGTGCAACAGCAGCCAACACTTTGGGAGCATGTGACGAATACTGAAATTCATGGATACTCGGGACCAATGTTTATTGGAAGTGATGGAGTACGACTACCGTACTACGAGATGTTCATGTGGAGAGATGGGAAGACACAACACGTGGCAAGTGTAAGACCCAGAGAGTC</canonical_amplicon>
		<polymorphic_amplicon>CCTGTACAAAGCCCTAATCTTATGTGATGGTCTCCAGCTTCTCAGTGACTACAAACCGCTAAGTGACAATTTGACGATTGTGCAACAGCAGCCAACRCTTTGGGAGCATGTGACGAATACTGAAATTCATGGATACTCGGGACCAATGTTTATTGGAAGTGATGGAGTACGACTACCGTACTACGAGATGTTCATGTGGAGAGATGGGAAGACACAACACGTGGCAAGTGTAAGACCCAGAGAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35927</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>418382</contig_pos>
        <strand>+</strand>
        <context>CAGTTTTTTT[A/G]GAAATTTCAY</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCAGGTGAGGTGGTTAAAAATGATCAAGTCTTTTGGAGTCAGTTTTTTT</left_flank>
        <right_flank>GAAATTTCACCATTTCAGCAACTCGACAAAATTGAAAAAAAAAATCACTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTTTTCTGAAAAAACACGGAAATTTTCTGATTTCCAAACACATTTCGAAGGGGGTGGGGTTCTTTTTCACAGAGGGCCTTTCTAATACGGGGGCCTTTCTATTACAGGGAACCCTTCTATATTTCCAAGCGCCTTCGGAGGGCCCTTTTATTAGAGGTGCTCTTCTATTAAAGGAGCCCTGTTAATACAGGTTTTTACGGTATTATATTCTTGAAGAGTTTGAAAATTCCTATTTCGGATTTTCGCGAAAAATTACAGTTTCAGATTTTCGTGAAAAGTTTTTGAAAAGTTTTAAAAATGTTTTTCGAGTCTTGTTTTCATACAACTATAATATTCACAATACCTAAAAATTGCAACCAACAAACTCGATTAGTTTTCAGGTATCCATAAAACGATACGTTCAACGGAGACCCATAACTTTCACTAGGCAAGAAATGGAAATGTTGAATCAGGTGAGGTGGTTAAAAATGATCAAGTCTTTTGGAGTCAGTTTTTTTAGAAATTTCACCATTTCAGCAACTCGACAAAATTGAAAAAAAAAATCACTGTCTCCATTCAACATTTTTGATAAAGTTTCTTATCCATTATATGACCATCCGAGGAACCGAACGAGGTTTTCGTTTCAATAGTTTCAAAGAAATAGTTTTGAAACCGAAAATATCTAGAAGTAGCAAAATAATTTCCAACTTAAACTATATCTAACCCCAAAAAGTTATAATAATTTCCAGCTAAAATACATGTCTCACACGAATATCAACCCTTTCACTGGAATTTGCTTCAATCAAGGATCCGAATTGATCGTGATGTGGCAATTCACAGCCAGATACTCTTTGGAGGACCTAATTTTTGGAAAAGAACAAAAGTTTGGAAGAAACTTTCAATCCACTTTTATCAAGCATATCATGCATGTGAGTTTTGATAATTTTATAAGCTTCAATTTTATTTTTCTTGTTTCAGGGAATAAACTTCATTCATAACAGTTCAATCAAGGTGCATGG</canonical>
            <polymorphic>ATGTTTTCTGAAAAAACACGGAAATTTTCTGATTTCCAAACACATTTCGAAGGGGGTGGGGTTCTTTTTCACAGAGGGCCTTTCTAATACGGGGGCCTTTCTATTACAGGGAACCCTTCTATATTTCCAAGCGCCTTCGGAGGGCCCTTTTATTAGAGGTGCTCTTCTATTAAAGGAGCCCTGTTAATACAGGTTTTTACGGTATTATATTCTTGAAGAGTTTGAAAATTCCTATTTCGGATTTTCGCGAAAAATTACAGTTTCAGATTTTCGTGAAAAGTTTTTGAAAAGTTTTAAAAATGTTTTTCGAGTCTTGTTTTCATACAACTATAATATTCACAATACCTAAAAATTGCAACCAACAAACTCGATTAGTTTTCAGGTATCCATAAAACGATACGTTCAACGGAGACCCATAACTTTCACTAGGCAAGAAATGGAAATGTTGAATCAGGTGAGGTGGTTAAAAATGATCAAGTCTTTTGGAGTCAGTTTTTTTRGAAATTTCACCATTTCAGCAACTCGACAAAATTGAAAAAAAAAATCACTGTCTCCATTCAACATTTTTGATAAAGTTTCTTATCCATTATATGACCATCCGAGGAACCGAACGAGGTTTTCGTTTCAATAGTTTCAAAGAAATAGTTTTGAAACCGAAAATATCTAGAAGTAGCAAAATAATTTCCAACTTAAACTATATCTAACCCCAAAAAGTTATAATAATTTCCAGCTAAAATACATGTCTCACACGAATATCAACCCTTTCACTGGAATTTGCTTCAATCAAGGATCCGAATTGATCGTGATGTGGCAATTCACAGCCAGATACTCTTTGGAGGACCTAATTTTTGGAAAAGAACAAAAGTTTGGAAGAAACTTTCAATCCACTTTTATCAAGCATATCATGCATGTGAGTTTTGATAATTTTATAAGCTTCAATTTTATTTTTCTTGTTTCAGGGAATAAACTTCATTCATAACAGTTCAATCAAGGTGCATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACTTTCACTAGGCAAGAAATG</pcr_primer_p1>
		<pcr_primer_p2>CTTCTAGATATTTTCGGTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TAACTTTCACTAGGCAAGAAATGGAAATGTTGAATCAGGTGAGGTGGTTAAAAATGATCAAGTCTTTTGGAGTCAGTTTTTTTAGAAATTTCACCATTTCAGCAACTCGACAAAATTGAAAAAAAAAATCACTGTCTCCATTCAACATTTTTGATAAAGTTTCTTATCCATTATATGACCATCCGAGGAACCGAACGAGGTTTTCGTTTCAATAGTTTCAAAGAAATAGTTTTGAAACCGAAAATATCTAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TAACTTTCACTAGGCAAGAAATGGAAATGTTGAATCAGGTGAGGTGGTTAAAAATGATCAAGTCTTTTGGAGTCAGTTTTTTTRGAAATTTCACCATTTCAGCAACTCGACAAAATTGAAAAAAAAAATCACTGTCTCCATTCAACATTTTTGATAAAGTTTCTTATCCATTATATGACCATCCGAGGAACCGAACGAGGTTTTCGTTTCAATAGTTTCAAAGAAATAGTTTTGAAACCGAAAATATCTAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35928</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>489894</contig_pos>
        <strand>+</strand>
        <context>AMATTTCTGA[G/T]TTTCCTGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCCTATCTCTCCTCTTTTTCTCTCATTCTCTCGCTAGTAAATTTCTGA</left_flank>
        <right_flank>TTTCCTGAAATAATATTTTCAGAAATTTCACTCACTTTGTTTCTCCGCCC</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATACAATGTAGTTACTGTGTATTACGGCGGTTACTGTGGTTCCAGTGAATTACTGTAGAATAGTGCAGTTACTGTATTCCGGCGGCTGTTGTAGTTCCAGCTTATTATTGTAGTACAGTGTGGTTACTGTACTACGGTGGTTACTGTAGTACAGCGTCGTTACTGTGTATTATTGTAGTTACTGTAGTTACTGTATTAAAAGGGTTTCAAAGATGATCTAGCCATTTTTATACCTTAAACACTTCAACATAAAGACCCTCCCACTTCTAACAGAACAATTTCGGATCTGTGTCTTGAAAAATGGAATCCCAGCCTCTAATTGACTGCCATCTAATAGAAGGCTACTCCAGCTGTGGATTGAATTTACAGTGCCATGATATTAGTTTAGAGAGCTCACGGTAAATTAGGATATATTCACATGTGCTTTAATGAGAGGGTGATGTCACACTTTTCCTATCTCTCCTCTTTTTCTCTCATTCTCTCGCTAGTAAATTTCTGATTTTCCTGAAATAATATTTTCAGAAATTTCACTCACTTTGTTTCTCCGCCCATTTCATAATTGTCATCTTTCCGCTAAGCTACGCCCAGAATTAGATCCCCTCCTCTCTAGAAATAATCACATCCTGCCTTGTCTAATCACTCTCTGTTTTTCATAGAATCACTTTTTTTTGGTGAACTATGTCCTGGGATATTTATAACCTTTCCATACCAACAATTTGTGTTGTTATTGAAATTTCAGGGGTTTTTGGTTCTTGTCATTTCGAATAGGAGAGTTATGGTAGTCAAACGATTTGAGATGTGATAACCACTTTTTTGAATTTTTGACCTTTACTAACTTTTTTGAAGAATAAACTAGTTTTAAAGAGGGGTCGTGTGGGGACCATACTCCGGAGGTACATATATCAAAAGAGGGTACATTATGCTCAGGAGGTACATAGTTTGAAGGAGTACTTCTAGGTAGTTGTCTCACTATAAGGGAGTACATCTAGGCCAATCTCAG</canonical>
            <polymorphic>ATACAATGTAGTTACTGTGTATTACGGCGGTTACTGTGGTTCCAGTGAATTACTGTAGAATAGTGCAGTTACTGTATTCCGGCGGCTGTTGTAGTTCCAGCTTATTATTGTAGTACAGTGTGGTTACTGTACTACGGTGGTTACTGTAGTACAGCGTCGTTACTGTGTATTATTGTAGTTACTGTAGTTACTGTATTAAAAGGGTTTCAAAGATGATCTAGCCATTTTTATACCTTAAACACTTCAACATAAAGACCCTCCCACTTCTAACAGAACAATTTCGGATCTGTGTCTTGAAAAATGGAATCCCAGCCTCTAATTGACTGCCATCTAATAGAAGGCTACTCCAGCTGTGGATTGAATTTACAGTGCCATGATATTAGTTTAGAGAGCTCACGGTAAATTAGGATATATTCACATGTGCTTTAATGAGAGGGTGATGTCACACTTTTCCTATCTCTCCTCTTTTTCTCTCATTCTCTCGCTAGTAAATTTCTGAKTTTCCTGAAATAATATTTTCAGAAATTTCACTCACTTTGTTTCTCCGCCCATTTCATAATTGTCATCTTTCCGCTAAGCTACGCCCAGAATTAGATCCCCTCCTCTCTAGAAATAATCACATCCTGCCTTGTCTAATCACTCTCTGTTTTTCATAGAATCACTTTTTTTTGGTGAACTATGTCCTGGGATATTTATAACCTTTCCATACCAACAATTTGTGTTGTTATTGAAATTTCAGGGGTTTTTGGTTCTTGTCATTTCGAATAGGAGAGTTATGGTAGTCAAACGATTTGAGATGTGATAACCACTTTTTTGAATTTTTGACCTTTACTAACTTTTTTGAAGAATAAACTAGTTTTAAAGAGGGGTCGTGTGGGGACCATACTCCGGAGGTACATATATCAAAAGAGGGTACATTATGCTCAGGAGGTACATAGTTTGAAGGAGTACTTCTAGGTAGTTGTCTCACTATAAGGGAGTACATCTAGGCCAATCTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTTTTCCTATCTCTCCTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TAAATATCCCAGGACATAGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACTTTTCCTATCTCTCCTCTTTTTCTCTCATTCTCTCGCTAGTAAATTTCTGATTTTCCTGAAATAATATTTTCAGAAATTTCACTCACTTTGTTTCTCCGCCCATTTCATAATTGTCATCTTTCCGCTAAGCTACGCCCAGAATTAGATCCCCTCCTCTCTAGAAATAATCACATCCTGCCTTGTCTAATCACTCTCTGTTTTTCATAGAATCACTTTTTTTTGGTGAACTATGTCCTGGGATATTTA</canonical_amplicon>
		<polymorphic_amplicon>CACTTTTCCTATCTCTCCTCTTTTTCTCTCATTCTCTCGCTAGTAAATTTCTGAKTTTCCTGAAATAATATTTTCAGAAATTTCACTCACTTTGTTTCTCCGCCCATTTCATAATTGTCATCTTTCCGCTAAGCTACGCCCAGAATTAGATCCCCTCCTCTCTAGAAATAATCACATCCTGCCTTGTCTAATCACTCTCTGTTTTTCATAGAATCACTTTTTTTTGGTGAACTATGTCCTGGGATATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35929</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>493857</contig_pos>
        <strand>+</strand>
        <context>GTAAAATGCT[A/T]CCTGATAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCCACGGTGTTGGTCTTTTTTCTGGAAAATGTTTATTTTGTAAAATGCT</left_flank>
        <right_flank>CCTGATAAAACTATGCTATAAAAGATCACTCAAAGTTTACAGTTTCATTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAAGCAAATGTATACAATGAAGAAGCTGGAATAGTGTTATCTGCAGCTCGGTACTAACAGTTTTCCATAATGCCAACATTTTAAAAATGAGGAATGACCAAATGATTCTTCTGCCAAATATTATTCCAGTAGGATCAGTAGACAGTTTTTACAAACAGATACTGGATATGAAAAGTGAGGACCAATTGGTAAAAATTTCTAGAAATTTTTAAAACTTGATAAGATATCAGTTTCTTCAATCACTCAGGACACGACGCATCTCGAAATATAGGAATTTGTATTGCTTGCTCCAATTCCAGAAGAAGATACAATATTCCAGAAAATAGACAATTGATAGGAAATAAATCCAGATGGTGCATATTCAAACATTTTGAGTAGTACGAAAGAAGATTTGACCTCCCTCCTGATCATTATTGTTGGAACCATAGTTTACATATCCCACCGATACGTCCACGGTGTTGGTCTTTTTTCTGGAAAATGTTTATTTTGTAAAATGCTTCCTGATAAAACTATGCTATAAAAGATCACTCAAAGTTTACAGTTTCATTGAAATGAATTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATACCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGATGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGA</canonical>
            <polymorphic>ACAAGCAAATGTATACAATGAAGAAGCTGGAATAGTGTTATCTGCAGCTCGGTACTAACAGTTTTCCATAATGCCAACATTTTAAAAATGAGGAATGACCAAATGATTCTTCTGCCAAATATTATTCCAGTAGGATCAGTAGACAGTTTTTACAAACAGATACTGGATATGAAAAGTGAGGACCAATTGGTAAAAATTTCTAGAAATTTTTAAAACTTGATAAGATATCAGTTTCTTCAATCACTCAGGACACGACGCATCTCGAAATATAGGAATTTGTATTGCTTGCTCCAATTCCAGAAGAAGATACAATATTCCAGAAAATAGACAATTGATAGGAAATAAATCCAGATGGTGCATATTCAAACATTTTGAGTAGTACGAAAGAAGATTTGACCTCCCTCCTGATCATTATTGTTGGAACCATAGTTTACATATCCCACCGATACGTCCACGGTGTTGGTCTTTTTTCTGGAAAATGTTTATTTTGTAAAATGCTWCCTGATAAAACTATGCTATAAAAGATCACTCAAAGTTTACAGTTTCATTGAAATGAATTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATACCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGATGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>200 147 135 82 76 68 56 46 36 31 30 29 29 20 15</canonical_bands>
                <polymorphic_bands>200 176 135 82 76 68 56 46 36 31 30 29 20 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATAGGAAATAAATCCAGATGGT</pcr_primer_p1>
		<pcr_primer_p2>GAATTCACATTATTTTCTTTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GATAGGAAATAAATCCAGATGGTGCATATTCAAACATTTTGAGTAGTACGAAAGAAGATTTGACCTCCCTCCTGATCATTATTGTTGGAACCATAGTTTACATATCCCACCGATACGTCCACGGTGTTGGTCTTTTTTCTGGAAAATGTTTATTTTGTAAAATGCTTCCTGATAAAACTATGCTATAAAAGATCACTCAAAGTTTACAGTTTCATTGAAATGAATTCTGAAAAAGAAAATAATGTGAATTC</canonical_amplicon>
		<polymorphic_amplicon>GATAGGAAATAAATCCAGATGGTGCATATTCAAACATTTTGAGTAGTACGAAAGAAGATTTGACCTCCCTCCTGATCATTATTGTTGGAACCATAGTTTACATATCCCACCGATACGTCCACGGTGTTGGTCTTTTTTCTGGAAAATGTTTATTTTGTAAAATGCTWCCTGATAAAACTATGCTATAAAAGATCACTCAAAGTTTACAGTTTCATTGAAATGAATTCTGAAAAAGAAAATAATGTGAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35930</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>493960</contig_pos>
        <strand></strand>
        <context>ACCCAACata[C/T]caaaactaac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGAATTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATA</left_flank>
        <right_flank>CAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATTCTTCTGCCAAATATTATTCCAGTAGGATCAGTAGACAGTTTTTACAAACAGATACTGGATATGAAAAGTGAGGACCAATTGGTAAAAATTTCTAGAAATTTTTAAAACTTGATAAGATATCAGTTTCTTCAATCACTCAGGACACGACGCATCTCGAAATATAGGAATTTGTATTGCTTGCTCCAATTCCAGAAGAAGATACAATATTCCAGAAAATAGACAATTGATAGGAAATAAATCCAGATGGTGCATATTCAAACATTTTGAGTAGTACGAAAGAAGATTTGACCTCCCTCCTGATCATTATTGTTGGAACCATAGTTTACATATCCCACCGATACGTCCACGGTGTTGGTCTTTTTTCTGGAAAATGTTTATTTTGTAAAATGCTTCCTGATAAAACTATGCTATAAAAGATCACTCAAAGTTTACAGTTTCATTGAAATGAATTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATACCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGATGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAACTGGTACTGTAGATAAAATTTTTTTTGATTACTCACCCTGTCAAAAAGTTCCACACCGCCTTCCCACATCCCACTTTTTCATTTCTTCCAATAGTT</canonical>
            <polymorphic>TGATTCTTCTGCCAAATATTATTCCAGTAGGATCAGTAGACAGTTTTTACAAACAGATACTGGATATGAAAAGTGAGGACCAATTGGTAAAAATTTCTAGAAATTTTTAAAACTTGATAAGATATCAGTTTCTTCAATCACTCAGGACACGACGCATCTCGAAATATAGGAATTTGTATTGCTTGCTCCAATTCCAGAAGAAGATACAATATTCCAGAAAATAGACAATTGATAGGAAATAAATCCAGATGGTGCATATTCAAACATTTTGAGTAGTACGAAAGAAGATTTGACCTCCCTCCTGATCATTATTGTTGGAACCATAGTTTACATATCCCACCGATACGTCCACGGTGTTGGTCTTTTTTCTGGAAAATGTTTATTTTGTAAAATGCTTCCTGATAAAACTATGCTATAAAAGATCACTCAAAGTTTACAGTTTCATTGAAATGAATTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATAYCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGATGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAACTGGTACTGTAGATAAAATTTTTTTTGATTACTCACCCTGTCAAAAAGTTCCACACCGCCTTCCCACATCCCACTTTTTCATTTCTTCCAATAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATGAATTCTGAAAAAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGACAGGGTGAGTAATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>501</pcr_amplicon_size>
		<canonical_amplicon>GAAATGAATTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATACCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGATGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAACTGGTACTGTAGATAAAATTTTTTTTGATTACTCACCCTGTCA</canonical_amplicon>
		<polymorphic_amplicon>GAAATGAATTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATAYCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGATGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAACTGGTACTGTAGATAAAATTTTTTTTGATTACTCACCCTGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35931</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>494172</contig_pos>
        <strand></strand>
        <context>cgtttttgta[C/A]tgaaaacgtr</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTA</left_flank>
        <right_flank>TGAAAACGTGAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAGAAAATAGACAATTGATAGGAAATAAATCCAGATGGTGCATATTCAAACATTTTGAGTAGTACGAAAGAAGATTTGACCTCCCTCCTGATCATTATTGTTGGAACCATAGTTTACATATCCCACCGATACGTCCACGGTGTTGGTCTTTTTTCTGGAAAATGTTTATTTTGTAAAATGCTTCCTGATAAAACTATGCTATAAAAGATCACTCAAAGTTTACAGTTTCATTGAAATGAATTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATACCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGATGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAACTGGTACTGTAGATAAAATTTTTTTTGATTACTCACCCTGTCAAAAAGTTCCACACCGCCTTCCCACATCCCACTTTTTCATTTCTTCCAATAGTTTGACGATGATTCTGTTGAACTTGGGAGTTTTCTGGGATGTTTCCACCGATTCCAGGAATTTGAGTGGAATTTTCAGTTGATCTTTTGGCAGCTTTGGTTGTTTTGTTTCTGAAAAAAAACAGGGATCAGATTTTTTTTAGGGTCTTAGGCAGTTACAGAACTATCTCAAACGTCCAACTCAACAATTTCTTACCGCCAGCAACAAATGAAAA</canonical>
            <polymorphic>TCCAGAAAATAGACAATTGATAGGAAATAAATCCAGATGGTGCATATTCAAACATTTTGAGTAGTACGAAAGAAGATTTGACCTCCCTCCTGATCATTATTGTTGGAACCATAGTTTACATATCCCACCGATACGTCCACGGTGTTGGTCTTTTTTCTGGAAAATGTTTATTTTGTAAAATGCTTCCTGATAAAACTATGCTATAAAAGATCACTCAAAGTTTACAGTTTCATTGAAATGAATTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATACCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTAMTGAAAACGTGAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGATGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAACTGGTACTGTAGATAAAATTTTTTTTGATTACTCACCCTGTCAAAAAGTTCCACACCGCCTTCCCACATCCCACTTTTTCATTTCTTCCAATAGTTTGACGATGATTCTGTTGAACTTGGGAGTTTTCTGGGATGTTTCCACCGATTCCAGGAATTTGAGTGGAATTTTCAGTTGATCTTTTGGCAGCTTTGGTTGTTTTGTTTCTGAAAAAAAACAGGGATCAGATTTTTTTTAGGGTCTTAGGCAGTTACAGAACTATCTCAAACGTCCAACTCAACAATTTCTTACCGCCAGCAACAAATGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>433 303 199 65</canonical_bands>
                <polymorphic_bands>632 303 65</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTGAAAAAGAAAATAATGTGAA</pcr_primer_p1>
		<pcr_primer_p2>TGACAGGGTGAGTAATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>493</pcr_amplicon_size>
		<canonical_amplicon>TTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATACCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGATGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAACTGGTACTGTAGATAAAATTTTTTTTGATTACTCACCCTGTCA</canonical_amplicon>
		<polymorphic_amplicon>TTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATACCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTAMTGAAAACGTGAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGATGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAACTGGTACTGTAGATAAAATTTTTTTTGATTACTCACCCTGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35932</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>494182</contig_pos>
        <strand></strand>
        <context>mtgaaaacgt[G/A]aaaaacaggt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGT</left_flank>
        <right_flank>AAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGACAATTGATAGGAAATAAATCCAGATGGTGCATATTCAAACATTTTGAGTAGTACGAAAGAAGATTTGACCTCCCTCCTGATCATTATTGTTGGAACCATAGTTTACATATCCCACCGATACGTCCACGGTGTTGGTCTTTTTTCTGGAAAATGTTTATTTTGTAAAATGCTTCCTGATAAAACTATGCTATAAAAGATCACTCAAAGTTTACAGTTTCATTGAAATGAATTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATACCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGATGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAACTGGTACTGTAGATAAAATTTTTTTTGATTACTCACCCTGTCAAAAAGTTCCACACCGCCTTCCCACATCCCACTTTTTCATTTCTTCCAATAGTTTGACGATGATTCTGTTGAACTTGGGAGTTTTCTGGGATGTTTCCACCGATTCCAGGAATTTGAGTGGAATTTTCAGTTGATCTTTTGGCAGCTTTGGTTGTTTTGTTTCTGAAAAAAAACAGGGATCAGATTTTTTTTAGGGTCTTAGGCAGTTACAGAACTATCTCAAACGTCCAACTCAACAATTTCTTACCGCCAGCAACAAATGAAAACCCGAATGAA</canonical>
            <polymorphic>AGACAATTGATAGGAAATAAATCCAGATGGTGCATATTCAAACATTTTGAGTAGTACGAAAGAAGATTTGACCTCCCTCCTGATCATTATTGTTGGAACCATAGTTTACATATCCCACCGATACGTCCACGGTGTTGGTCTTTTTTCTGGAAAATGTTTATTTTGTAAAATGCTTCCTGATAAAACTATGCTATAAAAGATCACTCAAAGTTTACAGTTTCATTGAAATGAATTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATACCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTRAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGATGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAACTGGTACTGTAGATAAAATTTTTTTTGATTACTCACCCTGTCAAAAAGTTCCACACCGCCTTCCCACATCCCACTTTTTCATTTCTTCCAATAGTTTGACGATGATTCTGTTGAACTTGGGAGTTTTCTGGGATGTTTCCACCGATTCCAGGAATTTGAGTGGAATTTTCAGTTGATCTTTTGGCAGCTTTGGTTGTTTTGTTTCTGAAAAAAAACAGGGATCAGATTTTTTTTAGGGTCTTAGGCAGTTACAGAACTATCTCAAACGTCCAACTCAACAATTTCTTACCGCCAGCAACAAATGAAAACCCGAATGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>156 116 85 85 73 69 68 57 55 51 33 33 32 21 18 12 11 11 7 5 2</canonical_bands>
                <polymorphic_bands>156 116 85 85 73 69 68 57 55 51 44 33 32 21 18 12 11 7 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTGAAAAAGAAAATAATGTGAA</pcr_primer_p1>
		<pcr_primer_p2>TGACAGGGTGAGTAATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>493</pcr_amplicon_size>
		<canonical_amplicon>TTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATACCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGATGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAACTGGTACTGTAGATAAAATTTTTTTTGATTACTCACCCTGTCA</canonical_amplicon>
		<polymorphic_amplicon>TTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATACCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTRAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGATGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAACTGGTACTGTAGATAAAATTTTTTTTGATTACTCACCCTGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35933</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>494199</contig_pos>
        <strand></strand>
        <context>aggtgtcttt[C/T]agaaattaga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTT</left_flank>
        <right_flank>AGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAATCCAGATGGTGCATATTCAAACATTTTGAGTAGTACGAAAGAAGATTTGACCTCCCTCCTGATCATTATTGTTGGAACCATAGTTTACATATCCCACCGATACGTCCACGGTGTTGGTCTTTTTTCTGGAAAATGTTTATTTTGTAAAATGCTTCCTGATAAAACTATGCTATAAAAGATCACTCAAAGTTTACAGTTTCATTGAAATGAATTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATACCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGATGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAACTGGTACTGTAGATAAAATTTTTTTTGATTACTCACCCTGTCAAAAAGTTCCACACCGCCTTCCCACATCCCACTTTTTCATTTCTTCCAATAGTTTGACGATGATTCTGTTGAACTTGGGAGTTTTCTGGGATGTTTCCACCGATTCCAGGAATTTGAGTGGAATTTTCAGTTGATCTTTTGGCAGCTTTGGTTGTTTTGTTTCTGAAAAAAAACAGGGATCAGATTTTTTTTAGGGTCTTAGGCAGTTACAGAACTATCTCAAACGTCCAACTCAACAATTTCTTACCGCCAGCAACAAATGAAAACCCGAATGAATCCACTTCCAGTGATTT</canonical>
            <polymorphic>TAAATCCAGATGGTGCATATTCAAACATTTTGAGTAGTACGAAAGAAGATTTGACCTCCCTCCTGATCATTATTGTTGGAACCATAGTTTACATATCCCACCGATACGTCCACGGTGTTGGTCTTTTTTCTGGAAAATGTTTATTTTGTAAAATGCTTCCTGATAAAACTATGCTATAAAAGATCACTCAAAGTTTACAGTTTCATTGAAATGAATTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATACCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTTYAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGATGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAACTGGTACTGTAGATAAAATTTTTTTTGATTACTCACCCTGTCAAAAAGTTCCACACCGCCTTCCCACATCCCACTTTTTCATTTCTTCCAATAGTTTGACGATGATTCTGTTGAACTTGGGAGTTTTCTGGGATGTTTCCACCGATTCCAGGAATTTGAGTGGAATTTTCAGTTGATCTTTTGGCAGCTTTGGTTGTTTTGTTTCTGAAAAAAAACAGGGATCAGATTTTTTTTAGGGTCTTAGGCAGTTACAGAACTATCTCAAACGTCCAACTCAACAATTTCTTACCGCCAGCAACAAATGAAAACCCGAATGAATCCACTTCCAGTGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>234 219 165 111 108 69 28 26 22 18</canonical_bands>
                <polymorphic_bands>273 234 219 111 69 28 26 22 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTGAAAAAGAAAATAATGTGAA</pcr_primer_p1>
		<pcr_primer_p2>TGACAGGGTGAGTAATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>493</pcr_amplicon_size>
		<canonical_amplicon>TTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATACCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGATGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAACTGGTACTGTAGATAAAATTTTTTTTGATTACTCACCCTGTCA</canonical_amplicon>
		<polymorphic_amplicon>TTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATACCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTTYAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGATGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAACTGGTACTGTAGATAAAATTTTTTTTGATTACTCACCCTGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35934</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>494260</contig_pos>
        <strand></strand>
        <context>gaatgcaaag[C/T]tttcaatcta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAG</left_flank>
        <right_flank>TTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGATGATCGGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTGATCATTATTGTTGGAACCATAGTTTACATATCCCACCGATACGTCCACGGTGTTGGTCTTTTTTCTGGAAAATGTTTATTTTGTAAAATGCTTCCTGATAAAACTATGCTATAAAAGATCACTCAAAGTTTACAGTTTCATTGAAATGAATTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATACCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGATGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAACTGGTACTGTAGATAAAATTTTTTTTGATTACTCACCCTGTCAAAAAGTTCCACACCGCCTTCCCACATCCCACTTTTTCATTTCTTCCAATAGTTTGACGATGATTCTGTTGAACTTGGGAGTTTTCTGGGATGTTTCCACCGATTCCAGGAATTTGAGTGGAATTTTCAGTTGATCTTTTGGCAGCTTTGGTTGTTTTGTTTCTGAAAAAAAACAGGGATCAGATTTTTTTTAGGGTCTTAGGCAGTTACAGAACTATCTCAAACGTCCAACTCAACAATTTCTTACCGCCAGCAACAAATGAAAACCCGAATGAATCCACTTCCAGTGATTTTGAAAAAGTTTCCCCTTTCCTTGTTTTTGTCTATTTTCTCCCACTGGGCCGTTAGTATCTT</canonical>
            <polymorphic>CCTGATCATTATTGTTGGAACCATAGTTTACATATCCCACCGATACGTCCACGGTGTTGGTCTTTTTTCTGGAAAATGTTTATTTTGTAAAATGCTTCCTGATAAAACTATGCTATAAAAGATCACTCAAAGTTTACAGTTTCATTGAAATGAATTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATACCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGYTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGATGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAACTGGTACTGTAGATAAAATTTTTTTTGATTACTCACCCTGTCAAAAAGTTCCACACCGCCTTCCCACATCCCACTTTTTCATTTCTTCCAATAGTTTGACGATGATTCTGTTGAACTTGGGAGTTTTCTGGGATGTTTCCACCGATTCCAGGAATTTGAGTGGAATTTTCAGTTGATCTTTTGGCAGCTTTGGTTGTTTTGTTTCTGAAAAAAAACAGGGATCAGATTTTTTTTAGGGTCTTAGGCAGTTACAGAACTATCTCAAACGTCCAACTCAACAATTTCTTACCGCCAGCAACAAATGAAAACCCGAATGAATCCACTTCCAGTGATTTTGAAAAAGTTTCCCCTTTCCTTGTTTTTGTCTATTTTCTCCCACTGGGCCGTTAGTATCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>257 227 209 108 98 65 36</canonical_bands>
                <polymorphic_bands>257 227 209 108 101 98</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>257 198 196 108 65 64 36 34 29 13</canonical_bands>
                <polymorphic_bands>257 198 196 108 101 64 34 29 13</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTGAAAAAGAAAATAATGTGAA</pcr_primer_p1>
		<pcr_primer_p2>TGACAGGGTGAGTAATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>493</pcr_amplicon_size>
		<canonical_amplicon>TTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATACCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGATGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAACTGGTACTGTAGATAAAATTTTTTTTGATTACTCACCCTGTCA</canonical_amplicon>
		<polymorphic_amplicon>TTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATACCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGYTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGATGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAACTGGTACTGTAGATAAAATTTTTTTTGATTACTCACCCTGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35935</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>494301</contig_pos>
        <strand></strand>
        <context>aagatttcaa[G/A]rtgatcggaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAA</left_flank>
        <right_flank>ATGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATACGTCCACGGTGTTGGTCTTTTTTCTGGAAAATGTTTATTTTGTAAAATGCTTCCTGATAAAACTATGCTATAAAAGATCACTCAAAGTTTACAGTTTCATTGAAATGAATTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATACCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGATGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAACTGGTACTGTAGATAAAATTTTTTTTGATTACTCACCCTGTCAAAAAGTTCCACACCGCCTTCCCACATCCCACTTTTTCATTTCTTCCAATAGTTTGACGATGATTCTGTTGAACTTGGGAGTTTTCTGGGATGTTTCCACCGATTCCAGGAATTTGAGTGGAATTTTCAGTTGATCTTTTGGCAGCTTTGGTTGTTTTGTTTCTGAAAAAAAACAGGGATCAGATTTTTTTTAGGGTCTTAGGCAGTTACAGAACTATCTCAAACGTCCAACTCAACAATTTCTTACCGCCAGCAACAAATGAAAACCCGAATGAATCCACTTCCAGTGATTTTGAAAAAGTTTCCCCTTTCCTTGTTTTTGTCTATTTTCTCCCACTGGGCCGTTAGTATCTTTGCCATGTTTTCCGGGGTGGTTGGTTGATCATCCCTATTAT</canonical>
            <polymorphic>GATACGTCCACGGTGTTGGTCTTTTTTCTGGAAAATGTTTATTTTGTAAAATGCTTCCTGATAAAACTATGCTATAAAAGATCACTCAAAGTTTACAGTTTCATTGAAATGAATTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATACCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAARATGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAACTGGTACTGTAGATAAAATTTTTTTTGATTACTCACCCTGTCAAAAAGTTCCACACCGCCTTCCCACATCCCACTTTTTCATTTCTTCCAATAGTTTGACGATGATTCTGTTGAACTTGGGAGTTTTCTGGGATGTTTCCACCGATTCCAGGAATTTGAGTGGAATTTTCAGTTGATCTTTTGGCAGCTTTGGTTGTTTTGTTTCTGAAAAAAAACAGGGATCAGATTTTTTTTAGGGTCTTAGGCAGTTACAGAACTATCTCAAACGTCCAACTCAACAATTTCTTACCGCCAGCAACAAATGAAAACCCGAATGAATCCACTTCCAGTGATTTTGAAAAAGTTTCCCCTTTCCTTGTTTTTGTCTATTTTCTCCCACTGGGCCGTTAGTATCTTTGCCATGTTTTCCGGGGTGGTTGGTTGATCATCCCTATTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>474 147 135 82 76 29 29 28</canonical_bands>
                <polymorphic_bands>474 147 135 111 76 29 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTGAAAAAGAAAATAATGTGAA</pcr_primer_p1>
		<pcr_primer_p2>TGACAGGGTGAGTAATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>493</pcr_amplicon_size>
		<canonical_amplicon>TTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATACCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGATGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAACTGGTACTGTAGATAAAATTTTTTTTGATTACTCACCCTGTCA</canonical_amplicon>
		<polymorphic_amplicon>TTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATACCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAARATGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAACTGGTACTGTAGATAAAATTTTTTTTGATTACTCACCCTGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35936</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>494302</contig_pos>
        <strand></strand>
        <context>agatttcaar[A/G]tgatcggaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAG</left_flank>
        <right_flank>TGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATACGTCCACGGTGTTGGTCTTTTTTCTGGAAAATGTTTATTTTGTAAAATGCTTCCTGATAAAACTATGCTATAAAAGATCACTCAAAGTTTACAGTTTCATTGAAATGAATTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATACCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGATGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAACTGGTACTGTAGATAAAATTTTTTTTGATTACTCACCCTGTCAAAAAGTTCCACACCGCCTTCCCACATCCCACTTTTTCATTTCTTCCAATAGTTTGACGATGATTCTGTTGAACTTGGGAGTTTTCTGGGATGTTTCCACCGATTCCAGGAATTTGAGTGGAATTTTCAGTTGATCTTTTGGCAGCTTTGGTTGTTTTGTTTCTGAAAAAAAACAGGGATCAGATTTTTTTTAGGGTCTTAGGCAGTTACAGAACTATCTCAAACGTCCAACTCAACAATTTCTTACCGCCAGCAACAAATGAAAACCCGAATGAATCCACTTCCAGTGATTTTGAAAAAGTTTCCCCTTTCCTTGTTTTTGTCTATTTTCTCCCACTGGGCCGTTAGTATCTTTGCCATGTTTTCCGGGGTGGTTGGTTGATCATCCCTATTATC</canonical>
            <polymorphic>ATACGTCCACGGTGTTGGTCTTTTTTCTGGAAAATGTTTATTTTGTAAAATGCTTCCTGATAAAACTATGCTATAAAAGATCACTCAAAGTTTACAGTTTCATTGAAATGAATTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATACCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGRTGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAACTGGTACTGTAGATAAAATTTTTTTTGATTACTCACCCTGTCAAAAAGTTCCACACCGCCTTCCCACATCCCACTTTTTCATTTCTTCCAATAGTTTGACGATGATTCTGTTGAACTTGGGAGTTTTCTGGGATGTTTCCACCGATTCCAGGAATTTGAGTGGAATTTTCAGTTGATCTTTTGGCAGCTTTGGTTGTTTTGTTTCTGAAAAAAAACAGGGATCAGATTTTTTTTAGGGTCTTAGGCAGTTACAGAACTATCTCAAACGTCCAACTCAACAATTTCTTACCGCCAGCAACAAATGAAAACCCGAATGAATCCACTTCCAGTGATTTTGAAAAAGTTTCCCCTTTCCTTGTTTTTGTCTATTTTCTCCCACTGGGCCGTTAGTATCTTTGCCATGTTTTCCGGGGTGGTTGGTTGATCATCCCTATTATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>475 147 135 82 76 29 29 27</canonical_bands>
                <polymorphic_bands>475 147 135 111 76 29 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTGAAAAAGAAAATAATGTGAA</pcr_primer_p1>
		<pcr_primer_p2>TGACAGGGTGAGTAATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>493</pcr_amplicon_size>
		<canonical_amplicon>TTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATACCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGATGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAACTGGTACTGTAGATAAAATTTTTTTTGATTACTCACCCTGTCA</canonical_amplicon>
		<polymorphic_amplicon>TTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATACCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGRTGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAACTGGTACTGTAGATAAAATTTTTTTTGATTACTCACCCTGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35937</snp_id>
        <super_contig>c010200871.Contig1</super_contig>
        <contig_pos>494315</contig_pos>
        <strand></strand>
        <context>atcggaaacc[A/C]gacagcgagc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGATGATCGGAAACC</left_flank>
        <right_flank>GACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAAC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGGTCTTTTTTCTGGAAAATGTTTATTTTGTAAAATGCTTCCTGATAAAACTATGCTATAAAAGATCACTCAAAGTTTACAGTTTCATTGAAATGAATTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATACCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGATGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAACTGGTACTGTAGATAAAATTTTTTTTGATTACTCACCCTGTCAAAAAGTTCCACACCGCCTTCCCACATCCCACTTTTTCATTTCTTCCAATAGTTTGACGATGATTCTGTTGAACTTGGGAGTTTTCTGGGATGTTTCCACCGATTCCAGGAATTTGAGTGGAATTTTCAGTTGATCTTTTGGCAGCTTTGGTTGTTTTGTTTCTGAAAAAAAACAGGGATCAGATTTTTTTTAGGGTCTTAGGCAGTTACAGAACTATCTCAAACGTCCAACTCAACAATTTCTTACCGCCAGCAACAAATGAAAACCCGAATGAATCCACTTCCAGTGATTTTGAAAAAGTTTCCCCTTTCCTTGTTTTTGTCTATTTTCTCCCACTGGGCCGTTAGTATCTTTGCCATGTTTTCCGGGGTGGTTGGTTGATCATCCCTATTATCTTTCATCTTTGTA</canonical>
            <polymorphic>GTTGGTCTTTTTTCTGGAAAATGTTTATTTTGTAAAATGCTTCCTGATAAAACTATGCTATAAAAGATCACTCAAAGTTTACAGTTTCATTGAAATGAATTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATACCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGATGATCGGAAACCMGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAACTGGTACTGTAGATAAAATTTTTTTTGATTACTCACCCTGTCAAAAAGTTCCACACCGCCTTCCCACATCCCACTTTTTCATTTCTTCCAATAGTTTGACGATGATTCTGTTGAACTTGGGAGTTTTCTGGGATGTTTCCACCGATTCCAGGAATTTGAGTGGAATTTTCAGTTGATCTTTTGGCAGCTTTGGTTGTTTTGTTTCTGAAAAAAAACAGGGATCAGATTTTTTTTAGGGTCTTAGGCAGTTACAGAACTATCTCAAACGTCCAACTCAACAATTTCTTACCGCCAGCAACAAATGAAAACCCGAATGAATCCACTTCCAGTGATTTTGAAAAAGTTTCCCCTTTCCTTGTTTTTGTCTATTTTCTCCCACTGGGCCGTTAGTATCTTTGCCATGTTTTCCGGGGTGGTTGGTTGATCATCCCTATTATCTTTCATCTTTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTGAAAAAGAAAATAATGTGAA</pcr_primer_p1>
		<pcr_primer_p2>TGACAGGGTGAGTAATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>493</pcr_amplicon_size>
		<canonical_amplicon>TTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATACCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGATGATCGGAAACCAGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAACTGGTACTGTAGATAAAATTTTTTTTGATTACTCACCCTGTCA</canonical_amplicon>
		<polymorphic_amplicon>TTCTGAAAAAGAAAATAATGTGAATTCTTTAAAATACCCAACATACCAAAACTAACCTTTCTGTCAATTTTCGGACATTTTGAACATTTTCAGGAGTCCGAAGCTCACCTTTCAAGTTTCTGATCCTTTTGAAAATTTTGGATGATGTAAAACAGAGATAGATTGAAAAAATTGCATTCACTGAATTATTTCATAATTCCCAAATTTTCAGCTATTTGCCGATTTCTAGAAGACACCTTCTTTGGCCCGTTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTTCAGAAATTAGAAAATTTCTTGAAAGCTAGGAATTTTCAAAAAACTCTATGTGAATGCAAAGCTTTCAATCTAGGTCTGTTTTACACCCTCTAAAGATTTCAAGATGATCGGAAACCMGACAGCGAGCTCCAGACTTCCGAAAATACTCAAAATGGCTGAAAATCAACTGGTACTGTAGATAAAATTTTTTTTGATTACTCACCCTGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35938</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>29735</contig_pos>
        <strand>+</strand>
        <context>TAATGTTCTC[A/G]AAATTCCGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTC</left_flank>
        <right_flank>AAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTCGTTAAGAGAGTGCTTGGCACAGATAAATGCAACATTGACGAGCGCGACTTCTTTGGCTAATTGCTTTGAGAATCTCCTGAGCTCCAGCTCGTCCAGAGAAGTTTCCATTTTTGAGATCAAATCGTGCACTTGAGAAATTGCATCTCCATCATACCAATTATCGGAACTGGGGTGGAAGAGGAGATGTCGTGCTTGTGGGTTACCAGGCGCTCCGTGAGGATTGATAAAACATTTTTCAAATCTGAAGATTCTTGTTTTCTTTGGGTCCCTCACGACTTTTCTTACTCGATTAGTTTATTATTTTCATTCACTCTCGCATCAAAAGAGAGGTTATTCAAATTAGAAATGTTCCTCCGTTGTACGATTGCTGACAGTTCCTGGAATCATAATCTTCAGAATTGACTAAACCAGCCCTACAAAAACGTATGGTTCAGTTGATTTTCAGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACCGTCACGGTAGAATACCCTAACTCCAAAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTCCTTT</canonical>
            <polymorphic>GAATTCGTTAAGAGAGTGCTTGGCACAGATAAATGCAACATTGACGAGCGCGACTTCTTTGGCTAATTGCTTTGAGAATCTCCTGAGCTCCAGCTCGTCCAGAGAAGTTTCCATTTTTGAGATCAAATCGTGCACTTGAGAAATTGCATCTCCATCATACCAATTATCGGAACTGGGGTGGAAGAGGAGATGTCGTGCTTGTGGGTTACCAGGCGCTCCGTGAGGATTGATAAAACATTTTTCAAATCTGAAGATTCTTGTTTTCTTTGGGTCCCTCACGACTTTTCTTACTCGATTAGTTTATTATTTTCATTCACTCTCGCATCAAAAGAGAGGTTATTCAAATTAGAAATGTTCCTCCGTTGTACGATTGCTGACAGTTCCTGGAATCATAATCTTCAGAATTGACTAAACCAGCCCTACAAAAACGTATGGTTCAGTTGATTTTCAGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCRAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACCGTCACGGTAGAATACCCTAACTCCAAAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTCCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTTCAGAATTGACTAAACCAG</pcr_primer_p1>
		<pcr_primer_p2>GGTATACAACGCTTAATGTCACT</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>ATCTTCAGAATTGACTAAACCAGCCCTACAAAAACGTATGGTTCAGTTGATTTTCAGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACC</canonical_amplicon>
		<polymorphic_amplicon>ATCTTCAGAATTGACTAAACCAGCCCTACAAAAACGTATGGTTCAGTTGATTTTCAGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCRAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35939</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>29760</contig_pos>
        <strand>+</strand>
        <context>TTTTCCCCTC[A/G]AGKAGTTGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTC</left_flank>
        <right_flank>AGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGATAAATGCAACATTGACGAGCGCGACTTCTTTGGCTAATTGCTTTGAGAATCTCCTGAGCTCCAGCTCGTCCAGAGAAGTTTCCATTTTTGAGATCAAATCGTGCACTTGAGAAATTGCATCTCCATCATACCAATTATCGGAACTGGGGTGGAAGAGGAGATGTCGTGCTTGTGGGTTACCAGGCGCTCCGTGAGGATTGATAAAACATTTTTCAAATCTGAAGATTCTTGTTTTCTTTGGGTCCCTCACGACTTTTCTTACTCGATTAGTTTATTATTTTCATTCACTCTCGCATCAAAAGAGAGGTTATTCAAATTAGAAATGTTCCTCCGTTGTACGATTGCTGACAGTTCCTGGAATCATAATCTTCAGAATTGACTAAACCAGCCCTACAAAAACGTATGGTTCAGTTGATTTTCAGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACCGTCACGGTAGAATACCCTAACTCCAAAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTCCTTTCCAACAGCTCAAACTGTTTCATTGA</canonical>
            <polymorphic>CAGATAAATGCAACATTGACGAGCGCGACTTCTTTGGCTAATTGCTTTGAGAATCTCCTGAGCTCCAGCTCGTCCAGAGAAGTTTCCATTTTTGAGATCAAATCGTGCACTTGAGAAATTGCATCTCCATCATACCAATTATCGGAACTGGGGTGGAAGAGGAGATGTCGTGCTTGTGGGTTACCAGGCGCTCCGTGAGGATTGATAAAACATTTTTCAAATCTGAAGATTCTTGTTTTCTTTGGGTCCCTCACGACTTTTCTTACTCGATTAGTTTATTATTTTCATTCACTCTCGCATCAAAAGAGAGGTTATTCAAATTAGAAATGTTCCTCCGTTGTACGATTGCTGACAGTTCCTGGAATCATAATCTTCAGAATTGACTAAACCAGCCCTACAAAAACGTATGGTTCAGTTGATTTTCAGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCRAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACCGTCACGGTAGAATACCCTAACTCCAAAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTCCTTTCCAACAGCTCAAACTGTTTCATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>503 387 110</canonical_bands>
                <polymorphic_bands>890 110</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTTCAGAATTGACTAAACCAG</pcr_primer_p1>
		<pcr_primer_p2>GGTATACAACGCTTAATGTCACT</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>ATCTTCAGAATTGACTAAACCAGCCCTACAAAAACGTATGGTTCAGTTGATTTTCAGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACC</canonical_amplicon>
		<polymorphic_amplicon>ATCTTCAGAATTGACTAAACCAGCCCTACAAAAACGTATGGTTCAGTTGATTTTCAGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCRAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35940</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>29763</contig_pos>
        <strand>+</strand>
        <context>TCCCCTCRAG[G/T]AGTTGTACTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCAAG</left_flank>
        <right_flank>AGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAATGCAACATTGACGAGCGCGACTTCTTTGGCTAATTGCTTTGAGAATCTCCTGAGCTCCAGCTCGTCCAGAGAAGTTTCCATTTTTGAGATCAAATCGTGCACTTGAGAAATTGCATCTCCATCATACCAATTATCGGAACTGGGGTGGAAGAGGAGATGTCGTGCTTGTGGGTTACCAGGCGCTCCGTGAGGATTGATAAAACATTTTTCAAATCTGAAGATTCTTGTTTTCTTTGGGTCCCTCACGACTTTTCTTACTCGATTAGTTTATTATTTTCATTCACTCTCGCATCAAAAGAGAGGTTATTCAAATTAGAAATGTTCCTCCGTTGTACGATTGCTGACAGTTCCTGGAATCATAATCTTCAGAATTGACTAAACCAGCCCTACAAAAACGTATGGTTCAGTTGATTTTCAGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACCGTCACGGTAGAATACCCTAACTCCAAAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTCCTTTCCAACAGCTCAAACTGTTTCATTGATGG</canonical>
            <polymorphic>ATAAATGCAACATTGACGAGCGCGACTTCTTTGGCTAATTGCTTTGAGAATCTCCTGAGCTCCAGCTCGTCCAGAGAAGTTTCCATTTTTGAGATCAAATCGTGCACTTGAGAAATTGCATCTCCATCATACCAATTATCGGAACTGGGGTGGAAGAGGAGATGTCGTGCTTGTGGGTTACCAGGCGCTCCGTGAGGATTGATAAAACATTTTTCAAATCTGAAGATTCTTGTTTTCTTTGGGTCCCTCACGACTTTTCTTACTCGATTAGTTTATTATTTTCATTCACTCTCGCATCAAAAGAGAGGTTATTCAAATTAGAAATGTTCCTCCGTTGTACGATTGCTGACAGTTCCTGGAATCATAATCTTCAGAATTGACTAAACCAGCCCTACAAAAACGTATGGTTCAGTTGATTTTCAGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCAAGKAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACCGTCACGGTAGAATACCCTAACTCCAAAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTCCTTTCCAACAGCTCAAACTGTTTCATTGATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTTCAGAATTGACTAAACCAG</pcr_primer_p1>
		<pcr_primer_p2>GGTATACAACGCTTAATGTCACT</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>ATCTTCAGAATTGACTAAACCAGCCCTACAAAAACGTATGGTTCAGTTGATTTTCAGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACC</canonical_amplicon>
		<polymorphic_amplicon>ATCTTCAGAATTGACTAAACCAGCCCTACAAAAACGTATGGTTCAGTTGATTTTCAGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCAAGKAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35941</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>29837</contig_pos>
        <strand>+</strand>
        <context>AAGAGAAATC[G/T]GCCGCCCGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATC</left_flank>
        <right_flank>GCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAGTTTCCATTTTTGAGATCAAATCGTGCACTTGAGAAATTGCATCTCCATCATACCAATTATCGGAACTGGGGTGGAAGAGGAGATGTCGTGCTTGTGGGTTACCAGGCGCTCCGTGAGGATTGATAAAACATTTTTCAAATCTGAAGATTCTTGTTTTCTTTGGGTCCCTCACGACTTTTCTTACTCGATTAGTTTATTATTTTCATTCACTCTCGCATCAAAAGAGAGGTTATTCAAATTAGAAATGTTCCTCCGTTGTACGATTGCTGACAGTTCCTGGAATCATAATCTTCAGAATTGACTAAACCAGCCCTACAAAAACGTATGGTTCAGTTGATTTTCAGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACCGTCACGGTAGAATACCCTAACTCCAAAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTCCTTTCCAACAGCTCAAACTGTTTCATTGATGGTTTCAGGTAGTCCGTTAAGTTCCCTAATGCTTCAGCTCTTCTCAAATGTGTTTGAATTCTTGGCAAATAGTCGT</canonical>
            <polymorphic>AGAAGTTTCCATTTTTGAGATCAAATCGTGCACTTGAGAAATTGCATCTCCATCATACCAATTATCGGAACTGGGGTGGAAGAGGAGATGTCGTGCTTGTGGGTTACCAGGCGCTCCGTGAGGATTGATAAAACATTTTTCAAATCTGAAGATTCTTGTTTTCTTTGGGTCCCTCACGACTTTTCTTACTCGATTAGTTTATTATTTTCATTCACTCTCGCATCAAAAGAGAGGTTATTCAAATTAGAAATGTTCCTCCGTTGTACGATTGCTGACAGTTCCTGGAATCATAATCTTCAGAATTGACTAAACCAGCCCTACAAAAACGTATGGTTCAGTTGATTTTCAGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCKGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACCGTCACGGTAGAATACCCTAACTCCAAAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTCCTTTCCAACAGCTCAAACTGTTTCATTGATGGTTTCAGGTAGTCCGTTAAGTTCCCTAATGCTTCAGCTCTTCTCAAATGTGTTTGAATTCTTGGCAAATAGTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTTCAGAATTGACTAAACCAG</pcr_primer_p1>
		<pcr_primer_p2>GGTATACAACGCTTAATGTCACT</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>ATCTTCAGAATTGACTAAACCAGCCCTACAAAAACGTATGGTTCAGTTGATTTTCAGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACC</canonical_amplicon>
		<polymorphic_amplicon>ATCTTCAGAATTGACTAAACCAGCCCTACAAAAACGTATGGTTCAGTTGATTTTCAGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCKGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35942</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>29855</contig_pos>
        <strand>+</strand>
        <context>GATTGCATAC[A/G]TAAAGGCAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATAC</left_flank>
        <right_flank>TAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATAC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCAAATCGTGCACTTGAGAAATTGCATCTCCATCATACCAATTATCGGAACTGGGGTGGAAGAGGAGATGTCGTGCTTGTGGGTTACCAGGCGCTCCGTGAGGATTGATAAAACATTTTTCAAATCTGAAGATTCTTGTTTTCTTTGGGTCCCTCACGACTTTTCTTACTCGATTAGTTTATTATTTTCATTCACTCTCGCATCAAAAGAGAGGTTATTCAAATTAGAAATGTTCCTCCGTTGTACGATTGCTGACAGTTCCTGGAATCATAATCTTCAGAATTGACTAAACCAGCCCTACAAAAACGTATGGTTCAGTTGATTTTCAGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACCGTCACGGTAGAATACCCTAACTCCAAAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTCCTTTCCAACAGCTCAAACTGTTTCATTGATGGTTTCAGGTAGTCCGTTAAGTTCCCTAATGCTTCAGCTCTTCTCAAATGTGTTTGAATTCTTGGCAAATAGTCGTAAATAGTGTCATCGGTTA</canonical>
            <polymorphic>GATCAAATCGTGCACTTGAGAAATTGCATCTCCATCATACCAATTATCGGAACTGGGGTGGAAGAGGAGATGTCGTGCTTGTGGGTTACCAGGCGCTCCGTGAGGATTGATAAAACATTTTTCAAATCTGAAGATTCTTGTTTTCTTTGGGTCCCTCACGACTTTTCTTACTCGATTAGTTTATTATTTTCATTCACTCTCGCATCAAAAGAGAGGTTATTCAAATTAGAAATGTTCCTCCGTTGTACGATTGCTGACAGTTCCTGGAATCATAATCTTCAGAATTGACTAAACCAGCCCTACAAAAACGTATGGTTCAGTTGATTTTCAGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACRTAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACCGTCACGGTAGAATACCCTAACTCCAAAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTCCTTTCCAACAGCTCAAACTGTTTCATTGATGGTTTCAGGTAGTCCGTTAAGTTCCCTAATGCTTCAGCTCTTCTCAAATGTGTTTGAATTCTTGGCAAATAGTCGTAAATAGTGTCATCGGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTTCAGAATTGACTAAACCAG</pcr_primer_p1>
		<pcr_primer_p2>ACGGTATACAACGCTTAATGTC</pcr_primer_p2>
		<pcr_amplicon_size>279</pcr_amplicon_size>
		<canonical_amplicon>ATCTTCAGAATTGACTAAACCAGCCCTACAAAAACGTATGGTTCAGTTGATTTTCAGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACCGT</canonical_amplicon>
		<polymorphic_amplicon>ATCTTCAGAATTGACTAAACCAGCCCTACAAAAACGTATGGTTCAGTTGATTTTCAGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACRTAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35943</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>29871</contig_pos>
        <strand>+</strand>
        <context>GCAAGGACGA[C/T]AGATGTACGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGA</left_flank>
        <right_flank>AGATGTACGCAGAGTGACATTAAGCGTTGTATACCGTCACGGTAGAATAC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGAAATTGCATCTCCATCATACCAATTATCGGAACTGGGGTGGAAGAGGAGATGTCGTGCTTGTGGGTTACCAGGCGCTCCGTGAGGATTGATAAAACATTTTTCAAATCTGAAGATTCTTGTTTTCTTTGGGTCCCTCACGACTTTTCTTACTCGATTAGTTTATTATTTTCATTCACTCTCGCATCAAAAGAGAGGTTATTCAAATTAGAAATGTTCCTCCGTTGTACGATTGCTGACAGTTCCTGGAATCATAATCTTCAGAATTGACTAAACCAGCCCTACAAAAACGTATGGTTCAGTTGATTTTCAGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACCGTCACGGTAGAATACCCTAACTCCAAAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTCCTTTCCAACAGCTCAAACTGTTTCATTGATGGTTTCAGGTAGTCCGTTAAGTTCCCTAATGCTTCAGCTCTTCTCAAATGTGTTTGAATTCTTGGCAAATAGTCGTAAATAGTGTCATCGGTTAATTCTTTCAGGCTGAA</canonical>
            <polymorphic>TGAGAAATTGCATCTCCATCATACCAATTATCGGAACTGGGGTGGAAGAGGAGATGTCGTGCTTGTGGGTTACCAGGCGCTCCGTGAGGATTGATAAAACATTTTTCAAATCTGAAGATTCTTGTTTTCTTTGGGTCCCTCACGACTTTTCTTACTCGATTAGTTTATTATTTTCATTCACTCTCGCATCAAAAGAGAGGTTATTCAAATTAGAAATGTTCCTCCGTTGTACGATTGCTGACAGTTCCTGGAATCATAATCTTCAGAATTGACTAAACCAGCCCTACAAAAACGTATGGTTCAGTTGATTTTCAGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGAYAGATGTACGCAGAGTGACATTAAGCGTTGTATACCGTCACGGTAGAATACCCTAACTCCAAAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTCCTTTCCAACAGCTCAAACTGTTTCATTGATGGTTTCAGGTAGTCCGTTAAGTTCCCTAATGCTTCAGCTCTTCTCAAATGTGTTTGAATTCTTGGCAAATAGTCGTAAATAGTGTCATCGGTTAATTCTTTCAGGCTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTTCAGAATTGACTAAACCAG</pcr_primer_p1>
		<pcr_primer_p2>GAGATTTTTCGGAGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>322</pcr_amplicon_size>
		<canonical_amplicon>ATCTTCAGAATTGACTAAACCAGCCCTACAAAAACGTATGGTTCAGTTGATTTTCAGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACCGTCACGGTAGAATACCCTAACTCCAAAAAACCTCCGAAAAATCTC</canonical_amplicon>
		<polymorphic_amplicon>ATCTTCAGAATTGACTAAACCAGCCCTACAAAAACGTATGGTTCAGTTGATTTTCAGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGAYAGATGTACGCAGAGTGACATTAAGCGTTGTATACCGTCACGGTAGAATACCCTAACTCCAAAAAACCTCCGAAAAATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35944</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>29993</contig_pos>
        <strand></strand>
        <context>tcagctgtca[A/C]ggttttagtc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCA</left_flank>
        <right_flank>GGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTTCTTTGGGTCCCTCACGACTTTTCTTACTCGATTAGTTTATTATTTTCATTCACTCTCGCATCAAAAGAGAGGTTATTCAAATTAGAAATGTTCCTCCGTTGTACGATTGCTGACAGTTCCTGGAATCATAATCTTCAGAATTGACTAAACCAGCCCTACAAAAACGTATGGTTCAGTTGATTTTCAGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACCGTCACGGTAGAATACCCTAACTCCAAAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTCCTTTCCAACAGCTCAAACTGTTTCATTGATGGTTTCAGGTAGTCCGTTAAGTTCCCTAATGCTTCAGCTCTTCTCAAATGTGTTTGAATTCTTGGCAAATAGTCGTAAATAGTGTCATCGGTTAATTCTTTCAGGCTGAAAAACATTTTGACTTGAATTGTATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTGCTGTGAAAGATATCAAAAAGTGGTTAAATAGTAAA</canonical>
            <polymorphic>TGTTTTCTTTGGGTCCCTCACGACTTTTCTTACTCGATTAGTTTATTATTTTCATTCACTCTCGCATCAAAAGAGAGGTTATTCAAATTAGAAATGTTCCTCCGTTGTACGATTGCTGACAGTTCCTGGAATCATAATCTTCAGAATTGACTAAACCAGCCCTACAAAAACGTATGGTTCAGTTGATTTTCAGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACCGTCACGGTAGAATACCCTAACTCCAAAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAMGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTCCTTTCCAACAGCTCAAACTGTTTCATTGATGGTTTCAGGTAGTCCGTTAAGTTCCCTAATGCTTCAGCTCTTCTCAAATGTGTTTGAATTCTTGGCAAATAGTCGTAAATAGTGTCATCGGTTAATTCTTTCAGGCTGAAAAACATTTTGACTTGAATTGTATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTGCTGTGAAAGATATCAAAAAGTGGTTAAATAGTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACCTCCGAAAAATCTC</pcr_primer_p1>
		<pcr_primer_p2>TGAAGGTAAAAAGAAATACATACAA</pcr_primer_p2>
		<pcr_amplicon_size>295</pcr_amplicon_size>
		<canonical_amplicon>AAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCA</canonical_amplicon>
		<polymorphic_amplicon>AAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAMGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35945</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>30035</contig_pos>
        <strand></strand>
        <context>ttatgtcaat[T/G]cgttgtttty</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAAT</left_flank>
        <right_flank>CGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATTATTTTCATTCACTCTCGCATCAAAAGAGAGGTTATTCAAATTAGAAATGTTCCTCCGTTGTACGATTGCTGACAGTTCCTGGAATCATAATCTTCAGAATTGACTAAACCAGCCCTACAAAAACGTATGGTTCAGTTGATTTTCAGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACCGTCACGGTAGAATACCCTAACTCCAAAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTCCTTTCCAACAGCTCAAACTGTTTCATTGATGGTTTCAGGTAGTCCGTTAAGTTCCCTAATGCTTCAGCTCTTCTCAAATGTGTTTGAATTCTTGGCAAATAGTCGTAAATAGTGTCATCGGTTAATTCTTTCAGGCTGAAAAACATTTTGACTTGAATTGTATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTGCTGTGAAAGATATCAAAAAGTGGTTAAATAGTAAANNNNNNNNNNNAGTTGATATCATGTTTTTTTTTCATCCCACC</canonical>
            <polymorphic>TTATTATTTTCATTCACTCTCGCATCAAAAGAGAGGTTATTCAAATTAGAAATGTTCCTCCGTTGTACGATTGCTGACAGTTCCTGGAATCATAATCTTCAGAATTGACTAAACCAGCCCTACAAAAACGTATGGTTCAGTTGATTTTCAGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACCGTCACGGTAGAATACCCTAACTCCAAAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATKCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTCCTTTCCAACAGCTCAAACTGTTTCATTGATGGTTTCAGGTAGTCCGTTAAGTTCCCTAATGCTTCAGCTCTTCTCAAATGTGTTTGAATTCTTGGCAAATAGTCGTAAATAGTGTCATCGGTTAATTCTTTCAGGCTGAAAAACATTTTGACTTGAATTGTATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTGCTGTGAAAGATATCAAAAAGTGGTTAAATAGTAAANNNNNNNNNNNAGTTGATATCATGTTTTTTTTTCATCCCACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>220 149 149 123 99 59 45 43 37 32 14 11 10 9</canonical_bands>
                <polymorphic_bands>220 149 149 123 99 59 45 43 37 32 23 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACCTCCGAAAAATCTC</pcr_primer_p1>
		<pcr_primer_p2>TGAAGGTAAAAAGAAATACATACAA</pcr_primer_p2>
		<pcr_amplicon_size>295</pcr_amplicon_size>
		<canonical_amplicon>AAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCA</canonical_amplicon>
		<polymorphic_amplicon>AAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATKCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35946</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>30045</contig_pos>
        <strand></strand>
        <context>kcgttgtttt[C/T]aatttaggtc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTT</left_flank>
        <right_flank>AATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTCACTCTCGCATCAAAAGAGAGGTTATTCAAATTAGAAATGTTCCTCCGTTGTACGATTGCTGACAGTTCCTGGAATCATAATCTTCAGAATTGACTAAACCAGCCCTACAAAAACGTATGGTTCAGTTGATTTTCAGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACCGTCACGGTAGAATACCCTAACTCCAAAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTCCTTTCCAACAGCTCAAACTGTTTCATTGATGGTTTCAGGTAGTCCGTTAAGTTCCCTAATGCTTCAGCTCTTCTCAAATGTGTTTGAATTCTTGGCAAATAGTCGTAAATAGTGTCATCGGTTAATTCTTTCAGGCTGAAAAACATTTTGACTTGAATTGTATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTGCTGTGAAAGATATCAAAAAGTGGTTAAATAGTAAANNNNNNNNNNNAGTTGATATCATGTTTTTTTTTCATCCCACCACACCTGCAA</canonical>
            <polymorphic>CATTCACTCTCGCATCAAAAGAGAGGTTATTCAAATTAGAAATGTTCCTCCGTTGTACGATTGCTGACAGTTCCTGGAATCATAATCTTCAGAATTGACTAAACCAGCCCTACAAAAACGTATGGTTCAGTTGATTTTCAGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACCGTCACGGTAGAATACCCTAACTCCAAAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTYAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTCCTTTCCAACAGCTCAAACTGTTTCATTGATGGTTTCAGGTAGTCCGTTAAGTTCCCTAATGCTTCAGCTCTTCTCAAATGTGTTTGAATTCTTGGCAAATAGTCGTAAATAGTGTCATCGGTTAATTCTTTCAGGCTGAAAAACATTTTGACTTGAATTGTATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTGCTGTGAAAGATATCAAAAAGTGGTTAAATAGTAAANNNNNNNNNNNAGTTGATATCATGTTTTTTTTTCATCCCACCACACCTGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACCTCCGAAAAATCTC</pcr_primer_p1>
		<pcr_primer_p2>TGAAGGTAAAAAGAAATACATACAA</pcr_primer_p2>
		<pcr_amplicon_size>295</pcr_amplicon_size>
		<canonical_amplicon>AAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCA</canonical_amplicon>
		<polymorphic_amplicon>AAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTYAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35947</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>30159</contig_pos>
        <strand>+</strand>
        <context>caaaaaatac[A/C]tttttTCAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATAC</left_flank>
        <right_flank>TTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACGTATGGTTCAGTTGATTTTCAGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACCGTCACGGTAGAATACCCTAACTCCAAAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTCCTTTCCAACAGCTCAAACTGTTTCATTGATGGTTTCAGGTAGTCCGTTAAGTTCCCTAATGCTTCAGCTCTTCTCAAATGTGTTTGAATTCTTGGCAAATAGTCGTAAATAGTGTCATCGGTTAATTCTTTCAGGCTGAAAAACATTTTGACTTGAATTGTATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTGCTGTGAAAGATATCAAAAAGTGGTTAAATAGTAAANNNNNNNNNNNAGTTGATATCATGTTTTTTTTTCATCCCACCACACCTGCAAATCGGGATTTTCTAATTTCCGGCTTTTTGGATTTTTCCCCTTTTTTCCTTTTTTTCTTTTCTTTTCCCAGAGAAACAGGCGCCAAAAGCGTTCTATTAGAGGTTTTACGGTATA</canonical>
            <polymorphic>AAAACGTATGGTTCAGTTGATTTTCAGCCATTTTGACCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACCGTCACGGTAGAATACCCTAACTCCAAAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACMTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTCCTTTCCAACAGCTCAAACTGTTTCATTGATGGTTTCAGGTAGTCCGTTAAGTTCCCTAATGCTTCAGCTCTTCTCAAATGTGTTTGAATTCTTGGCAAATAGTCGTAAATAGTGTCATCGGTTAATTCTTTCAGGCTGAAAAACATTTTGACTTGAATTGTATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTGCTGTGAAAGATATCAAAAAGTGGTTAAATAGTAAANNNNNNNNNNNAGTTGATATCATGTTTTTTTTTCATCCCACCACACCTGCAAATCGGGATTTTCTAATTTCCGGCTTTTTGGATTTTTCCCCTTTTTTCCTTTTTTTCTTTTCTTTTCCCAGAGAAACAGGCGCCAAAAGCGTTCTATTAGAGGTTTTACGGTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACCTCCGAAAAATCTC</pcr_primer_p1>
		<pcr_primer_p2>TGAAGGTAAAAAGAAATACATACAA</pcr_primer_p2>
		<pcr_amplicon_size>295</pcr_amplicon_size>
		<canonical_amplicon>AAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCA</canonical_amplicon>
		<polymorphic_amplicon>AAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACMTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35948</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>30195</contig_pos>
        <strand></strand>
        <context>TCTCTGATCA[A/C]ATTTTTTTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCA</left_flank>
        <right_flank>ATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTCCTTTCCAACAGCTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACCGTCACGGTAGAATACCCTAACTCCAAAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTCCTTTCCAACAGCTCAAACTGTTTCATTGATGGTTTCAGGTAGTCCGTTAAGTTCCCTAATGCTTCAGCTCTTCTCAAATGTGTTTGAATTCTTGGCAAATAGTCGTAAATAGTGTCATCGGTTAATTCTTTCAGGCTGAAAAACATTTTGACTTGAATTGTATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTGCTGTGAAAGATATCAAAAAGTGGTTAAATAGTAAANNNNNNNNNNNAGTTGATATCATGTTTTTTTTTCATCCCACCACACCTGCAAATCGGGATTTTCTAATTTCCGGCTTTTTGGATTTTTCCCCTTTTTTCCTTTTTTTCTTTTCTTTTCCCAGAGAAACAGGCGCCAAAAGCGTTCTATTAGAGGTTTTACGGTATATGAAAGGTCACTAACTCATAAGGAAGAATTTTGCTC</canonical>
            <polymorphic>CCATTTAAAGGTGGGAAGACATGAAAAAATAATGTTCTCAAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACCGTCACGGTAGAATACCCTAACTCCAAAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAMATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTCCTTTCCAACAGCTCAAACTGTTTCATTGATGGTTTCAGGTAGTCCGTTAAGTTCCCTAATGCTTCAGCTCTTCTCAAATGTGTTTGAATTCTTGGCAAATAGTCGTAAATAGTGTCATCGGTTAATTCTTTCAGGCTGAAAAACATTTTGACTTGAATTGTATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTGCTGTGAAAGATATCAAAAAGTGGTTAAATAGTAAANNNNNNNNNNNAGTTGATATCATGTTTTTTTTTCATCCCACCACACCTGCAAATCGGGATTTTCTAATTTCCGGCTTTTTGGATTTTTCCCCTTTTTTCCTTTTTTTCTTTTCTTTTCCCAGAGAAACAGGCGCCAAAAGCGTTCTATTAGAGGTTTTACGGTATATGAAAGGTCACTAACTCATAAGGAAGAATTTTGCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>368 265 182 123 41 11 10</canonical_bands>
                <polymorphic_bands>368 305 265 41 11 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>220 172 149 127 123 45 41 37 32 14 11 10 10 9</canonical_bands>
                <polymorphic_bands>272 220 172 127 45 41 37 32 14 11 10 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACCTCCGAAAAATCTC</pcr_primer_p1>
		<pcr_primer_p2>TGAAACCATCAATGAAACAGT</pcr_primer_p2>
		<pcr_amplicon_size>337</pcr_amplicon_size>
		<canonical_amplicon>AAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTCCTTTCCAACAGCTCAAACTGTTTCATTGATGGTTTCA</canonical_amplicon>
		<polymorphic_amplicon>AAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAMATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTCCTTTCCAACAGCTCAAACTGTTTCATTGATGGTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35949</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>30231</contig_pos>
        <strand>+</strand>
        <context>CCTTCACAGT[C/T]YTTTCCAACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCACAGT</left_flank>
        <right_flank>CTTTCCAACAGCTCAAACTGTTTCATTGATGGTTTCAGGTAGTCCGTTAA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACCGTCACGGTAGAATACCCTAACTCCAAAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTCCTTTCCAACAGCTCAAACTGTTTCATTGATGGTTTCAGGTAGTCCGTTAAGTTCCCTAATGCTTCAGCTCTTCTCAAATGTGTTTGAATTCTTGGCAAATAGTCGTAAATAGTGTCATCGGTTAATTCTTTCAGGCTGAAAAACATTTTGACTTGAATTGTATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTGCTGTGAAAGATATCAAAAAGTGGTTAAATAGTAAANNNNNNNNNNNAGTTGATATCATGTTTTTTTTTCATCCCACCACACCTGCAAATCGGGATTTTCTAATTTCCGGCTTTTTGGATTTTTCCCCTTTTTTCCTTTTTTTCTTTTCTTTTCCCAGAGAAACAGGCGCCAAAAGCGTTCTATTAGAGGTTTTACGGTATATGAAAGGTCACTAACTCATAAGGAAGAATTTTGCTCTCTGTGAACTTGATAATCATCTCAATAAACATTCCA</canonical>
            <polymorphic>CTCAAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACCGTCACGGTAGAATACCCTAACTCCAAAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTYCTTTCCAACAGCTCAAACTGTTTCATTGATGGTTTCAGGTAGTCCGTTAAGTTCCCTAATGCTTCAGCTCTTCTCAAATGTGTTTGAATTCTTGGCAAATAGTCGTAAATAGTGTCATCGGTTAATTCTTTCAGGCTGAAAAACATTTTGACTTGAATTGTATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTGCTGTGAAAGATATCAAAAAGTGGTTAAATAGTAAANNNNNNNNNNNAGTTGATATCATGTTTTTTTTTCATCCCACCACACCTGCAAATCGGGATTTTCTAATTTCCGGCTTTTTGGATTTTTCCCCTTTTTTCCTTTTTTTCTTTTCTTTTCCCAGAGAAACAGGCGCCAAAAGCGTTCTATTAGAGGTTTTACGGTATATGAAAGGTCACTAACTCATAAGGAAGAATTTTGCTCTCTGTGAACTTGATAATCATCTCAATAAACATTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACCTCCGAAAAATCTC</pcr_primer_p1>
		<pcr_primer_p2>GAACTTAACGGACTACCTGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>354</pcr_amplicon_size>
		<canonical_amplicon>AAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTCCTTTCCAACAGCTCAAACTGTTTCATTGATGGTTTCAGGTAGTCCGTTAAGTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTYCTTTCCAACAGCTCAAACTGTTTCATTGATGGTTTCAGGTAGTCCGTTAAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35950</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>30232</contig_pos>
        <strand>+</strand>
        <context>CTTCACAGTY[C/T]TTTCCAACAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTC</left_flank>
        <right_flank>TTTCCAACAGCTCAAACTGTTTCATTGATGGTTTCAGGTAGTCCGTTAAG</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACCGTCACGGTAGAATACCCTAACTCCAAAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTCCTTTCCAACAGCTCAAACTGTTTCATTGATGGTTTCAGGTAGTCCGTTAAGTTCCCTAATGCTTCAGCTCTTCTCAAATGTGTTTGAATTCTTGGCAAATAGTCGTAAATAGTGTCATCGGTTAATTCTTTCAGGCTGAAAAACATTTTGACTTGAATTGTATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTGCTGTGAAAGATATCAAAAAGTGGTTAAATAGTAAANNNNNNNNNNNAGTTGATATCATGTTTTTTTTTCATCCCACCACACCTGCAAATCGGGATTTTCTAATTTCCGGCTTTTTGGATTTTTCCCCTTTTTTCCTTTTTTTCTTTTCTTTTCCCAGAGAAACAGGCGCCAAAAGCGTTCTATTAGAGGTTTTACGGTATATGAAAGGTCACTAACTCATAAGGAAGAATTTTGCTCTCTGTGAACTTGATAATCATCTCAATAAACATTCCAG</canonical>
            <polymorphic>TCAAAATTCCGTTTAAATTTTCCCCTCAAGGAGTTGTACTTGTGGGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAATCTGCCGCCCGATTGCATACATAAAGGCAAGGACGATAGATGTACGCAGAGTGACATTAAGCGTTGTATACCGTCACGGTAGAATACCCTAACTCCAAAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTCYTTTCCAACAGCTCAAACTGTTTCATTGATGGTTTCAGGTAGTCCGTTAAGTTCCCTAATGCTTCAGCTCTTCTCAAATGTGTTTGAATTCTTGGCAAATAGTCGTAAATAGTGTCATCGGTTAATTCTTTCAGGCTGAAAAACATTTTGACTTGAATTGTATTACCGTAAAACCTCTAATAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTGCTGTGAAAGATATCAAAAAGTGGTTAAATAGTAAANNNNNNNNNNNAGTTGATATCATGTTTTTTTTTCATCCCACCACACCTGCAAATCGGGATTTTCTAATTTCCGGCTTTTTGGATTTTTCCCCTTTTTTCCTTTTTTTCTTTTCTTTTCCCAGAGAAACAGGCGCCAAAAGCGTTCTATTAGAGGTTTTACGGTATATGAAAGGTCACTAACTCATAAGGAAGAATTTTGCTCTCTGTGAACTTGATAATCATCTCAATAAACATTCCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACCTCCGAAAAATCTC</pcr_primer_p1>
		<pcr_primer_p2>GAACTTAACGGACTACCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>354</pcr_amplicon_size>
		<canonical_amplicon>AAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTCCTTTCCAACAGCTCAAACTGTTTCATTGATGGTTTCAGGTAGTCCGTTAAGTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACCTCCGAAAAATCTCCTGTCCACCCACCTTTAATTGGGTCTGGAGCTCAGCTGTCAAGGTTTTAGTCGCTTTCGAAAATTTTCAAAAATTATGTCAATTCGTTGTTTTCAATTTAGGTCTGTTTCACACCCTCCAAAAATATCCAAACCGATGGAAAACTTGACAGTCGAGGTCCAGACTCCTGAAAATGGCAAAAAATGCCAAAAGTCAACCAAAAAATACTTTTTTTCAGATTTTTTACAGTAGACTCTCTGATCAAATTTTTTTGTATGTATTTCTTTTTACCTTCACAGTCYTTTCCAACAGCTCAAACTGTTTCATTGATGGTTTCAGGTAGTCCGTTAAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35951</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>34122</contig_pos>
        <strand>+</strand>
        <context>ATAGATGATA[A/G]GAACAAGGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCTGACTGTTATCATTTCCAGGAGAAAATCTGAAAACAATAGATGATA</left_flank>
        <right_flank>GAACAAGGAACTGTCTGTACCAGACACATAGTTTTTAGTTGGAAACTCTG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCAGTTGACTATTTTTCCTAACTTTGACAGGAACCAAGAAAAAATAGCTAAAAGTTACAAGTTAGAGAAACCCCTCTCTCACATGTTGATGGTACTCTAATTTTCAAAAAAAATGCGGAAGTCACTGACCTTTAACTGCAGACTTCTGAGCATTCAAATGAGCTCTATATGCCGTATTCGAAATAATAATTGTAATAGCTACTGTAGACACTGCTGCCAGAATCACTCCGATGGATCTCATTCTGTGAGACTCGGTCTTCTTTTGGAATACTTTCTGAAATGTCCGTTTTTTTCCGACTTCAATGATGTTTTCTGTTCCCATCGCCGCCTTTTTATTATGGGTAGTTCGCTCATGCAAATAACTATAAGCCTATTACGGTCATGTCTGTACTCACTTCGCTATTCTTGTTCTGCGATTTCAGACAATTACATCCCGGAGTAAACCGGTTCCTGACTGTTATCATTTCCAGGAGAAAATCTGAAAACAATAGATGATAGGAACAAGGAACTGTCTGTACCAGACACATAGTTTTTAGTTGGAAACTCTGGAAGGAGCAAAAAGGAAAGAAGAAAACTCTGACAGGAAAGAAAAATTCAAGAAGGTGAAGGCAAAAGAAAATTCTACGTCGTCACAATGTGCCCCATAAAATTATGATGGGTATGAAGAATGTATGTGTATTGGCACATGGATTCCTATCAACATTTTATCTACACTGTCCAGTAACTAAAAAAGGGGCCAATGAAGAAATCGATTCTTATCACCAGGAGCATTTTATGAGGTTGTCAAGAAACCTGTCAATCAGAATGTGTATAAACAGAAGGAACTGTTTTTGTGACTTCCTGAATGTTAGTTCCAGTTCATCGTGACTTCTTACATGGAATGACTCCCAAGTGTTACCCTCAAAGTGAATCAAGTGTGCTGAATTTAATGGACATAATGAAAAAAAAAAGTTAACCTAGGATTTTTGAGATATTGAAAAATTTTTTGATTTTTTCAA</canonical>
            <polymorphic>TATCAGTTGACTATTTTTCCTAACTTTGACAGGAACCAAGAAAAAATAGCTAAAAGTTACAAGTTAGAGAAACCCCTCTCTCACATGTTGATGGTACTCTAATTTTCAAAAAAAATGCGGAAGTCACTGACCTTTAACTGCAGACTTCTGAGCATTCAAATGAGCTCTATATGCCGTATTCGAAATAATAATTGTAATAGCTACTGTAGACACTGCTGCCAGAATCACTCCGATGGATCTCATTCTGTGAGACTCGGTCTTCTTTTGGAATACTTTCTGAAATGTCCGTTTTTTTCCGACTTCAATGATGTTTTCTGTTCCCATCGCCGCCTTTTTATTATGGGTAGTTCGCTCATGCAAATAACTATAAGCCTATTACGGTCATGTCTGTACTCACTTCGCTATTCTTGTTCTGCGATTTCAGACAATTACATCCCGGAGTAAACCGGTTCCTGACTGTTATCATTTCCAGGAGAAAATCTGAAAACAATAGATGATARGAACAAGGAACTGTCTGTACCAGACACATAGTTTTTAGTTGGAAACTCTGGAAGGAGCAAAAAGGAAAGAAGAAAACTCTGACAGGAAAGAAAAATTCAAGAAGGTGAAGGCAAAAGAAAATTCTACGTCGTCACAATGTGCCCCATAAAATTATGATGGGTATGAAGAATGTATGTGTATTGGCACATGGATTCCTATCAACATTTTATCTACACTGTCCAGTAACTAAAAAAGGGGCCAATGAAGAAATCGATTCTTATCACCAGGAGCATTTTATGAGGTTGTCAAGAAACCTGTCAATCAGAATGTGTATAAACAGAAGGAACTGTTTTTGTGACTTCCTGAATGTTAGTTCCAGTTCATCGTGACTTCTTACATGGAATGACTCCCAAGTGTTACCCTCAAAGTGAATCAAGTGTGCTGAATTTAATGGACATAATGAAAAAAAAAAGTTAACCTAGGATTTTTGAGATATTGAAAAATTTTTTGATTTTTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGTACTCACTTCGCTATTCTT</pcr_primer_p1>
		<pcr_primer_p2>GTGACGACGTAGAATTTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTGTACTCACTTCGCTATTCTTGTTCTGCGATTTCAGACAATTACATCCCGGAGTAAACCGGTTCCTGACTGTTATCATTTCCAGGAGAAAATCTGAAAACAATAGATGATAGGAACAAGGAACTGTCTGTACCAGACACATAGTTTTTAGTTGGAAACTCTGGAAGGAGCAAAAAGGAAAGAAGAAAACTCTGACAGGAAAGAAAAATTCAAGAAGGTGAAGGCAAAAGAAAATTCTACGTCGTCAC</canonical_amplicon>
		<polymorphic_amplicon>TCTGTACTCACTTCGCTATTCTTGTTCTGCGATTTCAGACAATTACATCCCGGAGTAAACCGGTTCCTGACTGTTATCATTTCCAGGAGAAAATCTGAAAACAATAGATGATARGAACAAGGAACTGTCTGTACCAGACACATAGTTTTTAGTTGGAAACTCTGGAAGGAGCAAAAAGGAAAGAAGAAAACTCTGACAGGAAAGAAAAATTCAAGAAGGTGAAGGCAAAAGAAAATTCTACGTCGTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35952</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>34148</contig_pos>
        <strand>+</strand>
        <context>TGTACCAGAC[A/C]CATAGTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAATCTGAAAACAATAGATGATAGGAACAAGGAACTGTCTGTACCAGAC</left_flank>
        <right_flank>CATAGTTTTTAGTTGGAAACTCTGGAAGGAGCAAAAAGGAAAGAAGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACAGGAACCAAGAAAAAATAGCTAAAAGTTACAAGTTAGAGAAACCCCTCTCTCACATGTTGATGGTACTCTAATTTTCAAAAAAAATGCGGAAGTCACTGACCTTTAACTGCAGACTTCTGAGCATTCAAATGAGCTCTATATGCCGTATTCGAAATAATAATTGTAATAGCTACTGTAGACACTGCTGCCAGAATCACTCCGATGGATCTCATTCTGTGAGACTCGGTCTTCTTTTGGAATACTTTCTGAAATGTCCGTTTTTTTCCGACTTCAATGATGTTTTCTGTTCCCATCGCCGCCTTTTTATTATGGGTAGTTCGCTCATGCAAATAACTATAAGCCTATTACGGTCATGTCTGTACTCACTTCGCTATTCTTGTTCTGCGATTTCAGACAATTACATCCCGGAGTAAACCGGTTCCTGACTGTTATCATTTCCAGGAGAAAATCTGAAAACAATAGATGATAGGAACAAGGAACTGTCTGTACCAGACACATAGTTTTTAGTTGGAAACTCTGGAAGGAGCAAAAAGGAAAGAAGAAAACTCTGACAGGAAAGAAAAATTCAAGAAGGTGAAGGCAAAAGAAAATTCTACGTCGTCACAATGTGCCCCATAAAATTATGATGGGTATGAAGAATGTATGTGTATTGGCACATGGATTCCTATCAACATTTTATCTACACTGTCCAGTAACTAAAAAAGGGGCCAATGAAGAAATCGATTCTTATCACCAGGAGCATTTTATGAGGTTGTCAAGAAACCTGTCAATCAGAATGTGTATAAACAGAAGGAACTGTTTTTGTGACTTCCTGAATGTTAGTTCCAGTTCATCGTGACTTCTTACATGGAATGACTCCCAAGTGTTACCCTCAAAGTGAATCAAGTGTGCTGAATTTAATGGACATAATGAAAAAAAAAAGTTAACCTAGGATTTTTGAGATATTGAAAAATTTTTTGATTTTTTCAAAAAATCAATATCCCAATCAAAAAAAA</canonical>
            <polymorphic>TGACAGGAACCAAGAAAAAATAGCTAAAAGTTACAAGTTAGAGAAACCCCTCTCTCACATGTTGATGGTACTCTAATTTTCAAAAAAAATGCGGAAGTCACTGACCTTTAACTGCAGACTTCTGAGCATTCAAATGAGCTCTATATGCCGTATTCGAAATAATAATTGTAATAGCTACTGTAGACACTGCTGCCAGAATCACTCCGATGGATCTCATTCTGTGAGACTCGGTCTTCTTTTGGAATACTTTCTGAAATGTCCGTTTTTTTCCGACTTCAATGATGTTTTCTGTTCCCATCGCCGCCTTTTTATTATGGGTAGTTCGCTCATGCAAATAACTATAAGCCTATTACGGTCATGTCTGTACTCACTTCGCTATTCTTGTTCTGCGATTTCAGACAATTACATCCCGGAGTAAACCGGTTCCTGACTGTTATCATTTCCAGGAGAAAATCTGAAAACAATAGATGATAGGAACAAGGAACTGTCTGTACCAGACMCATAGTTTTTAGTTGGAAACTCTGGAAGGAGCAAAAAGGAAAGAAGAAAACTCTGACAGGAAAGAAAAATTCAAGAAGGTGAAGGCAAAAGAAAATTCTACGTCGTCACAATGTGCCCCATAAAATTATGATGGGTATGAAGAATGTATGTGTATTGGCACATGGATTCCTATCAACATTTTATCTACACTGTCCAGTAACTAAAAAAGGGGCCAATGAAGAAATCGATTCTTATCACCAGGAGCATTTTATGAGGTTGTCAAGAAACCTGTCAATCAGAATGTGTATAAACAGAAGGAACTGTTTTTGTGACTTCCTGAATGTTAGTTCCAGTTCATCGTGACTTCTTACATGGAATGACTCCCAAGTGTTACCCTCAAAGTGAATCAAGTGTGCTGAATTTAATGGACATAATGAAAAAAAAAAGTTAACCTAGGATTTTTGAGATATTGAAAAATTTTTTGATTTTTTCAAAAAATCAATATCCCAATCAAAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>147 130 105 86 81 57 48 48 43 37 31 29 28 27 26 22 15 14 9 8 7 2</canonical_bands>
                <polymorphic_bands>211 147 105 86 57 48 48 43 37 31 29 28 27 26 22 15 14 9 8 7 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGTACTCACTTCGCTATTCTT</pcr_primer_p1>
		<pcr_primer_p2>GTGACGACGTAGAATTTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTGTACTCACTTCGCTATTCTTGTTCTGCGATTTCAGACAATTACATCCCGGAGTAAACCGGTTCCTGACTGTTATCATTTCCAGGAGAAAATCTGAAAACAATAGATGATAGGAACAAGGAACTGTCTGTACCAGACACATAGTTTTTAGTTGGAAACTCTGGAAGGAGCAAAAAGGAAAGAAGAAAACTCTGACAGGAAAGAAAAATTCAAGAAGGTGAAGGCAAAAGAAAATTCTACGTCGTCAC</canonical_amplicon>
		<polymorphic_amplicon>TCTGTACTCACTTCGCTATTCTTGTTCTGCGATTTCAGACAATTACATCCCGGAGTAAACCGGTTCCTGACTGTTATCATTTCCAGGAGAAAATCTGAAAACAATAGATGATAGGAACAAGGAACTGTCTGTACCAGACMCATAGTTTTTAGTTGGAAACTCTGGAAGGAGCAAAAAGGAAAGAAGAAAACTCTGACAGGAAAGAAAAATTCAAGAAGGTGAAGGCAAAAGAAAATTCTACGTCGTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35953</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>34199</contig_pos>
        <strand></strand>
        <context>AAGAAGAAAA[C/A]TCTGACAGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CATAGTTTTTAGTTGGAAACTCTGGAAGGAGCAAAAAGGAAAGAAGAAAA</left_flank>
        <right_flank>TCTGACAGGAAAGAAAAATTCAAGAAGGTGAAGGCAAAAGAAAATTCTAC</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTCACATGTTGATGGTACTCTAATTTTCAAAAAAAATGCGGAAGTCACTGACCTTTAACTGCAGACTTCTGAGCATTCAAATGAGCTCTATATGCCGTATTCGAAATAATAATTGTAATAGCTACTGTAGACACTGCTGCCAGAATCACTCCGATGGATCTCATTCTGTGAGACTCGGTCTTCTTTTGGAATACTTTCTGAAATGTCCGTTTTTTTCCGACTTCAATGATGTTTTCTGTTCCCATCGCCGCCTTTTTATTATGGGTAGTTCGCTCATGCAAATAACTATAAGCCTATTACGGTCATGTCTGTACTCACTTCGCTATTCTTGTTCTGCGATTTCAGACAATTACATCCCGGAGTAAACCGGTTCCTGACTGTTATCATTTCCAGGAGAAAATCTGAAAACAATAGATGATAGGAACAAGGAACTGTCTGTACCAGACACATAGTTTTTAGTTGGAAACTCTGGAAGGAGCAAAAAGGAAAGAAGAAAACTCTGACAGGAAAGAAAAATTCAAGAAGGTGAAGGCAAAAGAAAATTCTACGTCGTCACAATGTGCCCCATAAAATTATGATGGGTATGAAGAATGTATGTGTATTGGCACATGGATTCCTATCAACATTTTATCTACACTGTCCAGTAACTAAAAAAGGGGCCAATGAAGAAATCGATTCTTATCACCAGGAGCATTTTATGAGGTTGTCAAGAAACCTGTCAATCAGAATGTGTATAAACAGAAGGAACTGTTTTTGTGACTTCCTGAATGTTAGTTCCAGTTCATCGTGACTTCTTACATGGAATGACTCCCAAGTGTTACCCTCAAAGTGAATCAAGTGTGCTGAATTTAATGGACATAATGAAAAAAAAAAGTTAACCTAGGATTTTTGAGATATTGAAAAATTTTTTGATTTTTTCAAAAAATCAATATCCCAATCAAAAAAAAACTAAAAAAAATTATTCTTGATTGTTTAATTAATTGTCTATCTACTGCTTT</canonical>
            <polymorphic>CTCTCACATGTTGATGGTACTCTAATTTTCAAAAAAAATGCGGAAGTCACTGACCTTTAACTGCAGACTTCTGAGCATTCAAATGAGCTCTATATGCCGTATTCGAAATAATAATTGTAATAGCTACTGTAGACACTGCTGCCAGAATCACTCCGATGGATCTCATTCTGTGAGACTCGGTCTTCTTTTGGAATACTTTCTGAAATGTCCGTTTTTTTCCGACTTCAATGATGTTTTCTGTTCCCATCGCCGCCTTTTTATTATGGGTAGTTCGCTCATGCAAATAACTATAAGCCTATTACGGTCATGTCTGTACTCACTTCGCTATTCTTGTTCTGCGATTTCAGACAATTACATCCCGGAGTAAACCGGTTCCTGACTGTTATCATTTCCAGGAGAAAATCTGAAAACAATAGATGATAGGAACAAGGAACTGTCTGTACCAGACACATAGTTTTTAGTTGGAAACTCTGGAAGGAGCAAAAAGGAAAGAAGAAAAMTCTGACAGGAAAGAAAAATTCAAGAAGGTGAAGGCAAAAGAAAATTCTACGTCGTCACAATGTGCCCCATAAAATTATGATGGGTATGAAGAATGTATGTGTATTGGCACATGGATTCCTATCAACATTTTATCTACACTGTCCAGTAACTAAAAAAGGGGCCAATGAAGAAATCGATTCTTATCACCAGGAGCATTTTATGAGGTTGTCAAGAAACCTGTCAATCAGAATGTGTATAAACAGAAGGAACTGTTTTTGTGACTTCCTGAATGTTAGTTCCAGTTCATCGTGACTTCTTACATGGAATGACTCCCAAGTGTTACCCTCAAAGTGAATCAAGTGTGCTGAATTTAATGGACATAATGAAAAAAAAAAGTTAACCTAGGATTTTTGAGATATTGAAAAATTTTTTGATTTTTTCAAAAAATCAATATCCCAATCAAAAAAAAACTAAAAAAAATTATTCTTGATTGTTTAATTAATTGTCTATCTACTGCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGTACTCACTTCGCTATTCTT</pcr_primer_p1>
		<pcr_primer_p2>GTGACGACGTAGAATTTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTGTACTCACTTCGCTATTCTTGTTCTGCGATTTCAGACAATTACATCCCGGAGTAAACCGGTTCCTGACTGTTATCATTTCCAGGAGAAAATCTGAAAACAATAGATGATAGGAACAAGGAACTGTCTGTACCAGACACATAGTTTTTAGTTGGAAACTCTGGAAGGAGCAAAAAGGAAAGAAGAAAACTCTGACAGGAAAGAAAAATTCAAGAAGGTGAAGGCAAAAGAAAATTCTACGTCGTCAC</canonical_amplicon>
		<polymorphic_amplicon>TCTGTACTCACTTCGCTATTCTTGTTCTGCGATTTCAGACAATTACATCCCGGAGTAAACCGGTTCCTGACTGTTATCATTTCCAGGAGAAAATCTGAAAACAATAGATGATAGGAACAAGGAACTGTCTGTACCAGACACATAGTTTTTAGTTGGAAACTCTGGAAGGAGCAAAAAGGAAAGAAGAAAAMTCTGACAGGAAAGAAAAATTCAAGAAGGTGAAGGCAAAAGAAAATTCTACGTCGTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35954</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>34328</contig_pos>
        <strand>+</strand>
        <context>CTATCAACAT[C/T]TTATCTACAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATGGGTATGAAGAATGTATGTGTATTGGCACATGGATTCCTATCAACAT</left_flank>
        <right_flank>TTATCTACACTGTCCAGTAACTAAAAAAGGGGCCAATGAAGAAATCGATT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGACACTGCTGCCAGAATCACTCCGATGGATCTCATTCTGTGAGACTCGGTCTTCTTTTGGAATACTTTCTGAAATGTCCGTTTTTTTCCGACTTCAATGATGTTTTCTGTTCCCATCGCCGCCTTTTTATTATGGGTAGTTCGCTCATGCAAATAACTATAAGCCTATTACGGTCATGTCTGTACTCACTTCGCTATTCTTGTTCTGCGATTTCAGACAATTACATCCCGGAGTAAACCGGTTCCTGACTGTTATCATTTCCAGGAGAAAATCTGAAAACAATAGATGATAGGAACAAGGAACTGTCTGTACCAGACACATAGTTTTTAGTTGGAAACTCTGGAAGGAGCAAAAAGGAAAGAAGAAAACTCTGACAGGAAAGAAAAATTCAAGAAGGTGAAGGCAAAAGAAAATTCTACGTCGTCACAATGTGCCCCATAAAATTATGATGGGTATGAAGAATGTATGTGTATTGGCACATGGATTCCTATCAACATTTTATCTACACTGTCCAGTAACTAAAAAAGGGGCCAATGAAGAAATCGATTCTTATCACCAGGAGCATTTTATGAGGTTGTCAAGAAACCTGTCAATCAGAATGTGTATAAACAGAAGGAACTGTTTTTGTGACTTCCTGAATGTTAGTTCCAGTTCATCGTGACTTCTTACATGGAATGACTCCCAAGTGTTACCCTCAAAGTGAATCAAGTGTGCTGAATTTAATGGACATAATGAAAAAAAAAAGTTAACCTAGGATTTTTGAGATATTGAAAAATTTTTTGATTTTTTCAAAAAATCAATATCCCAATCAAAAAAAAACTAAAAAAAATTATTCTTGATTGTTTAATTAATTGTCTATCTACTGCTTTTTAAATTTTAACAAACGGACATAAACTGACAAAGTTATGATTTTTTGAAAATTTAGACATTTTTTGGTACTTTTTGGACCATAACTCCCAAAAAAAAAATTTTTACCAACTATTCCGTTTGGAATCTAA</canonical>
            <polymorphic>TAGACACTGCTGCCAGAATCACTCCGATGGATCTCATTCTGTGAGACTCGGTCTTCTTTTGGAATACTTTCTGAAATGTCCGTTTTTTTCCGACTTCAATGATGTTTTCTGTTCCCATCGCCGCCTTTTTATTATGGGTAGTTCGCTCATGCAAATAACTATAAGCCTATTACGGTCATGTCTGTACTCACTTCGCTATTCTTGTTCTGCGATTTCAGACAATTACATCCCGGAGTAAACCGGTTCCTGACTGTTATCATTTCCAGGAGAAAATCTGAAAACAATAGATGATAGGAACAAGGAACTGTCTGTACCAGACACATAGTTTTTAGTTGGAAACTCTGGAAGGAGCAAAAAGGAAAGAAGAAAACTCTGACAGGAAAGAAAAATTCAAGAAGGTGAAGGCAAAAGAAAATTCTACGTCGTCACAATGTGCCCCATAAAATTATGATGGGTATGAAGAATGTATGTGTATTGGCACATGGATTCCTATCAACATYTTATCTACACTGTCCAGTAACTAAAAAAGGGGCCAATGAAGAAATCGATTCTTATCACCAGGAGCATTTTATGAGGTTGTCAAGAAACCTGTCAATCAGAATGTGTATAAACAGAAGGAACTGTTTTTGTGACTTCCTGAATGTTAGTTCCAGTTCATCGTGACTTCTTACATGGAATGACTCCCAAGTGTTACCCTCAAAGTGAATCAAGTGTGCTGAATTTAATGGACATAATGAAAAAAAAAAGTTAACCTAGGATTTTTGAGATATTGAAAAATTTTTTGATTTTTTCAAAAAATCAATATCCCAATCAAAAAAAAACTAAAAAAAATTATTCTTGATTGTTTAATTAATTGTCTATCTACTGCTTTTTAAATTTTAACAAACGGACATAAACTGACAAAGTTATGATTTTTTGAAAATTTAGACATTTTTTGGTACTTTTTGGACCATAACTCCCAAAAAAAAAATTTTTACCAACTATTCCGTTTGGAATCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGGCAAAAGAAAATTCTAC</pcr_primer_p1>
		<pcr_primer_p2>AACTAACATTCAGGAAGTCACAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAAGGCAAAAGAAAATTCTACGTCGTCACAATGTGCCCCATAAAATTATGATGGGTATGAAGAATGTATGTGTATTGGCACATGGATTCCTATCAACATTTTATCTACACTGTCCAGTAACTAAAAAAGGGGCCAATGAAGAAATCGATTCTTATCACCAGGAGCATTTTATGAGGTTGTCAAGAAACCTGTCAATCAGAATGTGTATAAACAGAAGGAACTGTTTTTGTGACTTCCTGAATGTTAGTT</canonical_amplicon>
		<polymorphic_amplicon>TGAAGGCAAAAGAAAATTCTACGTCGTCACAATGTGCCCCATAAAATTATGATGGGTATGAAGAATGTATGTGTATTGGCACATGGATTCCTATCAACATYTTATCTACACTGTCCAGTAACTAAAAAAGGGGCCAATGAAGAAATCGATTCTTATCACCAGGAGCATTTTATGAGGTTGTCAAGAAACCTGTCAATCAGAATGTGTATAAACAGAAGGAACTGTTTTTGTGACTTCCTGAATGTTAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35955</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>34350</contig_pos>
        <strand>+</strand>
        <context>GTCCAGTAAC[C/T]AAAAAAGGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTATTGGCACATGGATTCCTATCAACATTTTATCTACACTGTCCAGTAAC</left_flank>
        <right_flank>AAAAAAGGGGCCAATGAAGAAATCGATTCTTATCACCAGGAGCATTTTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCGATGGATCTCATTCTGTGAGACTCGGTCTTCTTTTGGAATACTTTCTGAAATGTCCGTTTTTTTCCGACTTCAATGATGTTTTCTGTTCCCATCGCCGCCTTTTTATTATGGGTAGTTCGCTCATGCAAATAACTATAAGCCTATTACGGTCATGTCTGTACTCACTTCGCTATTCTTGTTCTGCGATTTCAGACAATTACATCCCGGAGTAAACCGGTTCCTGACTGTTATCATTTCCAGGAGAAAATCTGAAAACAATAGATGATAGGAACAAGGAACTGTCTGTACCAGACACATAGTTTTTAGTTGGAAACTCTGGAAGGAGCAAAAAGGAAAGAAGAAAACTCTGACAGGAAAGAAAAATTCAAGAAGGTGAAGGCAAAAGAAAATTCTACGTCGTCACAATGTGCCCCATAAAATTATGATGGGTATGAAGAATGTATGTGTATTGGCACATGGATTCCTATCAACATTTTATCTACACTGTCCAGTAACTAAAAAAGGGGCCAATGAAGAAATCGATTCTTATCACCAGGAGCATTTTATGAGGTTGTCAAGAAACCTGTCAATCAGAATGTGTATAAACAGAAGGAACTGTTTTTGTGACTTCCTGAATGTTAGTTCCAGTTCATCGTGACTTCTTACATGGAATGACTCCCAAGTGTTACCCTCAAAGTGAATCAAGTGTGCTGAATTTAATGGACATAATGAAAAAAAAAAGTTAACCTAGGATTTTTGAGATATTGAAAAATTTTTTGATTTTTTCAAAAAATCAATATCCCAATCAAAAAAAAACTAAAAAAAATTATTCTTGATTGTTTAATTAATTGTCTATCTACTGCTTTTTAAATTTTAACAAACGGACATAAACTGACAAAGTTATGATTTTTTGAAAATTTAGACATTTTTTGGTACTTTTTGGACCATAACTCCCAAAAAAAAAATTTTTACCAACTATTCCGTTTGGAATCTAAAATAACTTTCAACGCTCTATCC</canonical>
            <polymorphic>TCCGATGGATCTCATTCTGTGAGACTCGGTCTTCTTTTGGAATACTTTCTGAAATGTCCGTTTTTTTCCGACTTCAATGATGTTTTCTGTTCCCATCGCCGCCTTTTTATTATGGGTAGTTCGCTCATGCAAATAACTATAAGCCTATTACGGTCATGTCTGTACTCACTTCGCTATTCTTGTTCTGCGATTTCAGACAATTACATCCCGGAGTAAACCGGTTCCTGACTGTTATCATTTCCAGGAGAAAATCTGAAAACAATAGATGATAGGAACAAGGAACTGTCTGTACCAGACACATAGTTTTTAGTTGGAAACTCTGGAAGGAGCAAAAAGGAAAGAAGAAAACTCTGACAGGAAAGAAAAATTCAAGAAGGTGAAGGCAAAAGAAAATTCTACGTCGTCACAATGTGCCCCATAAAATTATGATGGGTATGAAGAATGTATGTGTATTGGCACATGGATTCCTATCAACATTTTATCTACACTGTCCAGTAACYAAAAAAGGGGCCAATGAAGAAATCGATTCTTATCACCAGGAGCATTTTATGAGGTTGTCAAGAAACCTGTCAATCAGAATGTGTATAAACAGAAGGAACTGTTTTTGTGACTTCCTGAATGTTAGTTCCAGTTCATCGTGACTTCTTACATGGAATGACTCCCAAGTGTTACCCTCAAAGTGAATCAAGTGTGCTGAATTTAATGGACATAATGAAAAAAAAAAGTTAACCTAGGATTTTTGAGATATTGAAAAATTTTTTGATTTTTTCAAAAAATCAATATCCCAATCAAAAAAAAACTAAAAAAAATTATTCTTGATTGTTTAATTAATTGTCTATCTACTGCTTTTTAAATTTTAACAAACGGACATAAACTGACAAAGTTATGATTTTTTGAAAATTTAGACATTTTTTGGTACTTTTTGGACCATAACTCCCAAAAAAAAAATTTTTACCAACTATTCCGTTTGGAATCTAAAATAACTTTCAACGCTCTATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGGCAAAAGAAAATTCTAC</pcr_primer_p1>
		<pcr_primer_p2>AACTAACATTCAGGAAGTCACAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAAGGCAAAAGAAAATTCTACGTCGTCACAATGTGCCCCATAAAATTATGATGGGTATGAAGAATGTATGTGTATTGGCACATGGATTCCTATCAACATTTTATCTACACTGTCCAGTAACTAAAAAAGGGGCCAATGAAGAAATCGATTCTTATCACCAGGAGCATTTTATGAGGTTGTCAAGAAACCTGTCAATCAGAATGTGTATAAACAGAAGGAACTGTTTTTGTGACTTCCTGAATGTTAGTT</canonical_amplicon>
		<polymorphic_amplicon>TGAAGGCAAAAGAAAATTCTACGTCGTCACAATGTGCCCCATAAAATTATGATGGGTATGAAGAATGTATGTGTATTGGCACATGGATTCCTATCAACATTTTATCTACACTGTCCAGTAACYAAAAAAGGGGCCAATGAAGAAATCGATTCTTATCACCAGGAGCATTTTATGAGGTTGTCAAGAAACCTGTCAATCAGAATGTGTATAAACAGAAGGAACTGTTTTTGTGACTTCCTGAATGTTAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35956</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>34493</contig_pos>
        <strand>+</strand>
        <context>TCATCGTGAC[C/T]TCTTacatgg</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGGAACTGTTTTTGTGACTTCCTGAATGTTAGTTCCAGTTCATCGTGAC</left_flank>
        <right_flank>TCTTACATGGAATGACTCCCAAGTGTTACCCTCAAAGTGAATCAAGTGTG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTATTACGGTCATGTCTGTACTCACTTCGCTATTCTTGTTCTGCGATTTCAGACAATTACATCCCGGAGTAAACCGGTTCCTGACTGTTATCATTTCCAGGAGAAAATCTGAAAACAATAGATGATAGGAACAAGGAACTGTCTGTACCAGACACATAGTTTTTAGTTGGAAACTCTGGAAGGAGCAAAAAGGAAAGAAGAAAACTCTGACAGGAAAGAAAAATTCAAGAAGGTGAAGGCAAAAGAAAATTCTACGTCGTCACAATGTGCCCCATAAAATTATGATGGGTATGAAGAATGTATGTGTATTGGCACATGGATTCCTATCAACATTTTATCTACACTGTCCAGTAACTAAAAAAGGGGCCAATGAAGAAATCGATTCTTATCACCAGGAGCATTTTATGAGGTTGTCAAGAAACCTGTCAATCAGAATGTGTATAAACAGAAGGAACTGTTTTTGTGACTTCCTGAATGTTAGTTCCAGTTCATCGTGACTTCTTACATGGAATGACTCCCAAGTGTTACCCTCAAAGTGAATCAAGTGTGCTGAATTTAATGGACATAATGAAAAAAAAAAGTTAACCTAGGATTTTTGAGATATTGAAAAATTTTTTGATTTTTTCAAAAAATCAATATCCCAATCAAAAAAAAACTAAAAAAAATTATTCTTGATTGTTTAATTAATTGTCTATCTACTGCTTTTTAAATTTTAACAAACGGACATAAACTGACAAAGTTATGATTTTTTGAAAATTTAGACATTTTTTGGTACTTTTTGGACCATAACTCCCAAAAAAAAAATTTTTACCAACTATTCCGTTTGGAATCTAAAATAACTTTCAACGCTCTATCCAACCATATAGGTCACGATTTTTTTCGAGGGTAACACTTGGGAGTCATTCCATGTTAATAGGTTTAAGAACCCTTTTCCTCGGAAAAACTGTTTTCCTTTCTACCTCATCATTTAATGATCCAATTATTGTCACTTGATTTGTT</canonical>
            <polymorphic>CCTATTACGGTCATGTCTGTACTCACTTCGCTATTCTTGTTCTGCGATTTCAGACAATTACATCCCGGAGTAAACCGGTTCCTGACTGTTATCATTTCCAGGAGAAAATCTGAAAACAATAGATGATAGGAACAAGGAACTGTCTGTACCAGACACATAGTTTTTAGTTGGAAACTCTGGAAGGAGCAAAAAGGAAAGAAGAAAACTCTGACAGGAAAGAAAAATTCAAGAAGGTGAAGGCAAAAGAAAATTCTACGTCGTCACAATGTGCCCCATAAAATTATGATGGGTATGAAGAATGTATGTGTATTGGCACATGGATTCCTATCAACATTTTATCTACACTGTCCAGTAACTAAAAAAGGGGCCAATGAAGAAATCGATTCTTATCACCAGGAGCATTTTATGAGGTTGTCAAGAAACCTGTCAATCAGAATGTGTATAAACAGAAGGAACTGTTTTTGTGACTTCCTGAATGTTAGTTCCAGTTCATCGTGACYTCTTACATGGAATGACTCCCAAGTGTTACCCTCAAAGTGAATCAAGTGTGCTGAATTTAATGGACATAATGAAAAAAAAAAGTTAACCTAGGATTTTTGAGATATTGAAAAATTTTTTGATTTTTTCAAAAAATCAATATCCCAATCAAAAAAAAACTAAAAAAAATTATTCTTGATTGTTTAATTAATTGTCTATCTACTGCTTTTTAAATTTTAACAAACGGACATAAACTGACAAAGTTATGATTTTTTGAAAATTTAGACATTTTTTGGTACTTTTTGGACCATAACTCCCAAAAAAAAAATTTTTACCAACTATTCCGTTTGGAATCTAAAATAACTTTCAACGCTCTATCCAACCATATAGGTCACGATTTTTTTCGAGGGTAACACTTGGGAGTCATTCCATGTTAATAGGTTTAAGAACCCTTTTCCTCGGAAAAACTGTTTTCCTTTCTACCTCATCATTTAATGATCCAATTATTGTCACTTGATTTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGGAACTGTTTTTGTGACTT</pcr_primer_p1>
		<pcr_primer_p2>AGGAAAAGGGTTCTTAAACCTA</pcr_primer_p2>
		<pcr_amplicon_size>488</pcr_amplicon_size>
		<canonical_amplicon>GAAGGAACTGTTTTTGTGACTTCCTGAATGTTAGTTCCAGTTCATCGTGACTTCTTACATGGAATGACTCCCAAGTGTTACCCTCAAAGTGAATCAAGTGTGCTGAATTTAATGGACATAATGAAAAAAAAAAGTTAACCTAGGATTTTTGAGATATTGAAAAATTTTTTGATTTTTTCAAAAAATCAATATCCCAATCAAAAAAAAACTAAAAAAAATTATTCTTGATTGTTTAATTAATTGTCTATCTACTGCTTTTTAAATTTTAACAAACGGACATAAACTGACAAAGTTATGATTTTTTGAAAATTTAGACATTTTTTGGTACTTTTTGGACCATAACTCCCAAAAAAAAAATTTTTACCAACTATTCCGTTTGGAATCTAAAATAACTTTCAACGCTCTATCCAACCATATAGGTCACGATTTTTTTCGAGGGTAACACTTGGGAGTCATTCCATGTTAATAGGTTTAAGAACCCTTTTCCT</canonical_amplicon>
		<polymorphic_amplicon>GAAGGAACTGTTTTTGTGACTTCCTGAATGTTAGTTCCAGTTCATCGTGACYTCTTACATGGAATGACTCCCAAGTGTTACCCTCAAAGTGAATCAAGTGTGCTGAATTTAATGGACATAATGAAAAAAAAAAGTTAACCTAGGATTTTTGAGATATTGAAAAATTTTTTGATTTTTTCAAAAAATCAATATCCCAATCAAAAAAAAACTAAAAAAAATTATTCTTGATTGTTTAATTAATTGTCTATCTACTGCTTTTTAAATTTTAACAAACGGACATAAACTGACAAAGTTATGATTTTTTGAAAATTTAGACATTTTTTGGTACTTTTTGGACCATAACTCCCAAAAAAAAAATTTTTACCAACTATTCCGTTTGGAATCTAAAATAACTTTCAACGCTCTATCCAACCATATAGGTCACGATTTTTTTCGAGGGTAACACTTGGGAGTCATTCCATGTTAATAGGTTTAAGAACCCTTTTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35957</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>34515</contig_pos>
        <strand></strand>
        <context>atgactccca[A/C]gtgttaccct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGAATGTTAGTTCCAGTTCATCGTGACTTCTTACATGGAATGACTCCCA</left_flank>
        <right_flank>GTGTTACCCTCAAAGTGAATCAAGTGTGCTGAATTTAATGGACATAATGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACTTCGCTATTCTTGTTCTGCGATTTCAGACAATTACATCCCGGAGTAAACCGGTTCCTGACTGTTATCATTTCCAGGAGAAAATCTGAAAACAATAGATGATAGGAACAAGGAACTGTCTGTACCAGACACATAGTTTTTAGTTGGAAACTCTGGAAGGAGCAAAAAGGAAAGAAGAAAACTCTGACAGGAAAGAAAAATTCAAGAAGGTGAAGGCAAAAGAAAATTCTACGTCGTCACAATGTGCCCCATAAAATTATGATGGGTATGAAGAATGTATGTGTATTGGCACATGGATTCCTATCAACATTTTATCTACACTGTCCAGTAACTAAAAAAGGGGCCAATGAAGAAATCGATTCTTATCACCAGGAGCATTTTATGAGGTTGTCAAGAAACCTGTCAATCAGAATGTGTATAAACAGAAGGAACTGTTTTTGTGACTTCCTGAATGTTAGTTCCAGTTCATCGTGACTTCTTACATGGAATGACTCCCAAGTGTTACCCTCAAAGTGAATCAAGTGTGCTGAATTTAATGGACATAATGAAAAAAAAAAGTTAACCTAGGATTTTTGAGATATTGAAAAATTTTTTGATTTTTTCAAAAAATCAATATCCCAATCAAAAAAAAACTAAAAAAAATTATTCTTGATTGTTTAATTAATTGTCTATCTACTGCTTTTTAAATTTTAACAAACGGACATAAACTGACAAAGTTATGATTTTTTGAAAATTTAGACATTTTTTGGTACTTTTTGGACCATAACTCCCAAAAAAAAAATTTTTACCAACTATTCCGTTTGGAATCTAAAATAACTTTCAACGCTCTATCCAACCATATAGGTCACGATTTTTTTCGAGGGTAACACTTGGGAGTCATTCCATGTTAATAGGTTTAAGAACCCTTTTCCTCGGAAAAACTGTTTTCCTTTCTACCTCATCATTTAATGATCCAATTATTGTCACTTGATTTGTTTTTCACATTTTTCACGCATTCC</canonical>
            <polymorphic>TCACTTCGCTATTCTTGTTCTGCGATTTCAGACAATTACATCCCGGAGTAAACCGGTTCCTGACTGTTATCATTTCCAGGAGAAAATCTGAAAACAATAGATGATAGGAACAAGGAACTGTCTGTACCAGACACATAGTTTTTAGTTGGAAACTCTGGAAGGAGCAAAAAGGAAAGAAGAAAACTCTGACAGGAAAGAAAAATTCAAGAAGGTGAAGGCAAAAGAAAATTCTACGTCGTCACAATGTGCCCCATAAAATTATGATGGGTATGAAGAATGTATGTGTATTGGCACATGGATTCCTATCAACATTTTATCTACACTGTCCAGTAACTAAAAAAGGGGCCAATGAAGAAATCGATTCTTATCACCAGGAGCATTTTATGAGGTTGTCAAGAAACCTGTCAATCAGAATGTGTATAAACAGAAGGAACTGTTTTTGTGACTTCCTGAATGTTAGTTCCAGTTCATCGTGACTTCTTACATGGAATGACTCCCAMGTGTTACCCTCAAAGTGAATCAAGTGTGCTGAATTTAATGGACATAATGAAAAAAAAAAGTTAACCTAGGATTTTTGAGATATTGAAAAATTTTTTGATTTTTTCAAAAAATCAATATCCCAATCAAAAAAAAACTAAAAAAAATTATTCTTGATTGTTTAATTAATTGTCTATCTACTGCTTTTTAAATTTTAACAAACGGACATAAACTGACAAAGTTATGATTTTTTGAAAATTTAGACATTTTTTGGTACTTTTTGGACCATAACTCCCAAAAAAAAAATTTTTACCAACTATTCCGTTTGGAATCTAAAATAACTTTCAACGCTCTATCCAACCATATAGGTCACGATTTTTTTCGAGGGTAACACTTGGGAGTCATTCCATGTTAATAGGTTTAAGAACCCTTTTCCTCGGAAAAACTGTTTTCCTTTCTACCTCATCATTTAATGATCCAATTATTGTCACTTGATTTGTTTTTCACATTTTTCACGCATTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTGAATGTTAGTTCCAGTTC</pcr_primer_p1>
		<pcr_primer_p2>AGGAAAAGGGTTCTTAAACCTA</pcr_primer_p2>
		<pcr_amplicon_size>467</pcr_amplicon_size>
		<canonical_amplicon>TCCTGAATGTTAGTTCCAGTTCATCGTGACTTCTTACATGGAATGACTCCCAAGTGTTACCCTCAAAGTGAATCAAGTGTGCTGAATTTAATGGACATAATGAAAAAAAAAAGTTAACCTAGGATTTTTGAGATATTGAAAAATTTTTTGATTTTTTCAAAAAATCAATATCCCAATCAAAAAAAAACTAAAAAAAATTATTCTTGATTGTTTAATTAATTGTCTATCTACTGCTTTTTAAATTTTAACAAACGGACATAAACTGACAAAGTTATGATTTTTTGAAAATTTAGACATTTTTTGGTACTTTTTGGACCATAACTCCCAAAAAAAAAATTTTTACCAACTATTCCGTTTGGAATCTAAAATAACTTTCAACGCTCTATCCAACCATATAGGTCACGATTTTTTTCGAGGGTAACACTTGGGAGTCATTCCATGTTAATAGGTTTAAGAACCCTTTTCCT</canonical_amplicon>
		<polymorphic_amplicon>TCCTGAATGTTAGTTCCAGTTCATCGTGACTTCTTACATGGAATGACTCCCAMGTGTTACCCTCAAAGTGAATCAAGTGTGCTGAATTTAATGGACATAATGAAAAAAAAAAGTTAACCTAGGATTTTTGAGATATTGAAAAATTTTTTGATTTTTTCAAAAAATCAATATCCCAATCAAAAAAAAACTAAAAAAAATTATTCTTGATTGTTTAATTAATTGTCTATCTACTGCTTTTTAAATTTTAACAAACGGACATAAACTGACAAAGTTATGATTTTTTGAAAATTTAGACATTTTTTGGTACTTTTTGGACCATAACTCCCAAAAAAAAAATTTTTACCAACTATTCCGTTTGGAATCTAAAATAACTTTCAACGCTCTATCCAACCATATAGGTCACGATTTTTTTCGAGGGTAACACTTGGGAGTCATTCCATGTTAATAGGTTTAAGAACCCTTTTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35958</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>40054</contig_pos>
        <strand>+</strand>
        <context>AAAATCTGTG[A/G]AAAAAAATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTG</left_flank>
        <right_flank>AAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGCTGATTTTGGGGAGACATTGCCTTGGGGTTAGAAAAAAAAAGAATAATAAAGCAAATTACAAATTTTTTATAATAGACATGACTTTGGCTGGGCATAAAAACATGAAAAAACGTGTTGTTCAGTTGATTCAGATCGTTTTCGTGAGTTTGGAGCTCGGCTGTCACATGTCGGTTCATTTCAAAAATTTTGAAGATTACAAAACAGACCTAGATTGAAAACTTTGAATTCACTGAAGTTTCAAAAATGAAGTTTTAAAAGTGATCCGACGATTGACAGCCGAGATCCAGACTCCTGAAAAAGGTCAAAATCAACTAAACAACACGTTTTGTAAAAAATTCTACAATTTCTTATATTCTTCAAATTTTCATTTCGAACAATATTTCAAATCTCTTAATTACTTCAAAAAAACAAAACAACTACAGGGAAATTACAAAAAAATTAAATACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAG</canonical>
            <polymorphic>AAAGCTGATTTTGGGGAGACATTGCCTTGGGGTTAGAAAAAAAAAGAATAATAAAGCAAATTACAAATTTTTTATAATAGACATGACTTTGGCTGGGCATAAAAACATGAAAAAACGTGTTGTTCAGTTGATTCAGATCGTTTTCGTGAGTTTGGAGCTCGGCTGTCACATGTCGGTTCATTTCAAAAATTTTGAAGATTACAAAACAGACCTAGATTGAAAACTTTGAATTCACTGAAGTTTCAAAAATGAAGTTTTAAAAGTGATCCGACGATTGACAGCCGAGATCCAGACTCCTGAAAAAGGTCAAAATCAACTAAACAACACGTTTTGTAAAAAATTCTACAATTTCTTATATTCTTCAAATTTTCATTTCGAACAATATTTCAAATCTCTTAATTACTTCAAAAAAACAAAACAACTACAGGGAAATTACAAAAAAATTAAATACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTGRAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCATTTCGAACAATATTTCA</pcr_primer_p1>
		<pcr_primer_p2>AAGTCTCTTTCCCCATAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTCATTTCGAACAATATTTCAAATCTCTTAATTACTTCAAAAAAACAAAACAACTACAGGGAAATTACAAAAAAATTAAATACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCATTTCGAACAATATTTCAAATCTCTTAATTACTTCAAAAAAACAAAACAACTACAGGGAAATTACAAAAAAATTAAATACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTGRAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35959</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>40348</contig_pos>
        <strand>+</strand>
        <context>AATTRTRTAC[A/T]AAACAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATAC</left_flank>
        <right_flank>AAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTGAAAAAGGTCAAAATCAACTAAACAACACGTTTTGTAAAAAATTCTACAATTTCTTATATTCTTCAAATTTTCATTTCGAACAATATTTCAAATCTCTTAATTACTTCAAAAAAACAAAACAACTACAGGGAAATTACAAAAAAATTAAATACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAGTACTCCCGCATATTTTTTGACACTTCGCTCAAATGCTTCAACTCCTTATGGGTGTGCAGGAATCCCACATAATTCGGATCAATGGTTCGTTCTGACATACGGCAGGATGATGTTGATGATTTATCTTGCTCGTCAGAAGATACCAACTCATTTATGATGTTTCGATTTTCCAGGATACCACGACGCGATTTGAAGGGGCGGACTCTGGAAACATTAAAGTTTAAGAAATAATTATGTTAAAATTTCAAAGAAACTTACTGTGGTTGCATTTCAAATTGTTCTTGCAGTTTATTA</canonical>
            <polymorphic>TCCTGAAAAAGGTCAAAATCAACTAAACAACACGTTTTGTAAAAAATTCTACAATTTCTTATATTCTTCAAATTTTCATTTCGAACAATATTTCAAATCTCTTAATTACTTCAAAAAAACAAAACAACTACAGGGAAATTACAAAAAAATTAAATACACGAAAGCAGGAAAAAACGGGTATAAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACWAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAGTACTCCCGCATATTTTTTGACACTTCGCTCAAATGCTTCAACTCCTTATGGGTGTGCAGGAATCCCACATAATTCGGATCAATGGTTCGTTCTGACATACGGCAGGATGATGTTGATGATTTATCTTGCTCGTCAGAAGATACCAACTCATTTATGATGTTTCGATTTTCCAGGATACCACGACGCGATTTGAAGGGGCGGACTCTGGAAACATTAAAGTTTAAGAAATAATTATGTTAAAATTTCAAAGAAACTTACTGTGGTTGCATTTCAAATTGTTCTTGCAGTTTATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGATTCTCTACGACACTAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAGACCTGGCTCTAGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCT</canonical_amplicon>
		<polymorphic_amplicon>CCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACWAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35960</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>40517</contig_pos>
        <strand>+</strand>
        <context>GGTGGCACGG[A/G]TCGCTTTCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGG</left_flank>
        <right_flank>TCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAGTACTCCCGCATAT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAACGGGTATAAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAGTACTCCCGCATATTTTTTGACACTTCGCTCAAATGCTTCAACTCCTTATGGGTGTGCAGGAATCCCACATAATTCGGATCAATGGTTCGTTCTGACATACGGCAGGATGATGTTGATGATTTATCTTGCTCGTCAGAAGATACCAACTCATTTATGATGTTTCGATTTTCCAGGATACCACGACGCGATTTGAAGGGGCGGACTCTGGAAACATTAAAGTTTAAGAAATAATTATGTTAAAATTTCAAAGAAACTTACTGTGGTTGCATTTCAAATTGTTCTTGCAGTTTATTAAATCGTTGTGAAACAACAAACTTCAAAACTCCGTCAATCGAACCAGCACGTGTCAATGTTTCATGATCAAGTTCAAAACATAGGCGATCTCCTTTGGTTTGTACTGATTTCGGTCGCATTTCGATTCTGATCTTATCACTGTTGCTATCCATCAACAAGTTGATCACAC</canonical>
            <polymorphic>AAAAACGGGTATAAAACAATGTCATAAAAATCTGTGAAAAAAAATTGAATGGCATTGGAAAAAGAGCACACGGGAAAGAATCGGTTCGAAAAAGTACACATAATAATTTTTTGACTACAATAGCACACATTTTTATGGGGAAAGAGACTTGAGGTTTTTTGGCGAACAAAAACAAAAGATGAATTAAAATGAATAAAATGATATGTTAAAGAAAATGAAAGTGAGATGCAGGGTGCGACTAGAATAAGGGATGGTGGAGTATCATAAAGATCGGCCAGATTCTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGRTCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAGTACTCCCGCATATTTTTTGACACTTCGCTCAAATGCTTCAACTCCTTATGGGTGTGCAGGAATCCCACATAATTCGGATCAATGGTTCGTTCTGACATACGGCAGGATGATGTTGATGATTTATCTTGCTCGTCAGAAGATACCAACTCATTTATGATGTTTCGATTTTCCAGGATACCACGACGCGATTTGAAGGGGCGGACTCTGGAAACATTAAAGTTTAAGAAATAATTATGTTAAAATTTCAAAGAAACTTACTGTGGTTGCATTTCAAATTGTTCTTGCAGTTTATTAAATCGTTGTGAAACAACAAACTTCAAAACTCCGTCAATCGAACCAGCACGTGTCAATGTTTCATGATCAAGTTCAAAACATAGGCGATCTCCTTTGGTTTGTACTGATTTCGGTCGCATTTCGATTCTGATCTTATCACTGTTGCTATCCATCAACAAGTTGATCACAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>282 268 230 115 43 33 21 8</canonical_bands>
                <polymorphic_bands>345 282 268 43 33 21 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTACGACACTAAAAGAGAGTAGG</pcr_primer_p1>
		<pcr_primer_p2>AAATATGCGGGAGTACTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>CTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGATCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAGTACTCCCGCATATTT</canonical_amplicon>
		<polymorphic_amplicon>CTCTACGACACTAAAAGAGAGTAGGTATAGTGAAGTGATAATTATATACAAAACAAAAAAAACTAAATCTATTAAAAATAAAGCATATTATAGAAGTTATATTTTTTGGAGTTATTTTAAAAGAATTTTCCAAAAATTAAATAATTAATACTTATGGGAAAATCGAATCCGTTTCGGATTCATATGAGGTGGAATATGTGGGCTGGCTGGTGGCACGGRTCGCTTTCTAGAGCCAGGTCTTCTGTTAGTAATGAAGTACTCCCGCATATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35961</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>43786</contig_pos>
        <strand>+</strand>
        <context>ATTGTTGAAA[A/G]TTCAAATAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCTCGAGACATAATGTAGACTGAAAGAAAATTGGTATTCATTGTTGAAA</left_flank>
        <right_flank>TTCAAATAAAGCACTTACTTTTGAACTCAGAATCAAGGATGTGTGGACGC</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTCTGTACAAGCACCACAAAAGCCACCAGGAAGACCATCATCGTGCCAGTCTTCAGCGATTCCTTCGGCAAATAAGGACCCCATGAACCAGAGATGTCGGTAGATTTTGATATTGAATGGTAGCTCTCCTTCGGACACTGAAAGTTGAATATTCGAAACTTTGATTTTGAGAGTTAGGTCACTTACAGTATTGTTTGTACAGCTCCAAATCTCGGTATTTATCCAAATCAGTGAAAAACTCAATGGCTTTCTTCGGCGGGCCGAATTGTCGGGGCACTGTCCATTGCATTTTGCGGAATTCCGTTTTGCACATTATTTCATGAGGGAAGCTGTTCAAAATTGTGTCCTCATACGCCTGGTACTTTCTTGGTTCAATTGAAATGCGTGTGTACTTAAACCAGTCGTGTTTGTATTCAGGAAACTCTTCTGGAAAACGTTTACCGCGAGCGTCTCGAGACATAATGTAGACTGAAAGAAAATTGGTATTCATTGTTGAAAGTTCAAATAAAGCACTTACTTTTGAACTCAGAATCAAGGATGTGTGGACGCTGAATTTTTTTATGAAGTCCGGTCATGATTTTGATTCCTCCCGGGAAGACTGAGATTCTTCTCTCAATTGCTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGTTATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATAGCGAATCTTCTTTTCATACTTTTCTTTTTCCGATGATATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGCTGAAGCTTCAGCATCTTTCCCATTATTTTTATCGATTACAAAGTCCTTTGTGACATGTAGCGTTGGTGTTCGTGGCGTTAGTGTTCGCGGCGTTACTTTCCTCGGCGAAAGAAGATTAACATCGTCCGGA</canonical>
            <polymorphic>CGTCTGTACAAGCACCACAAAAGCCACCAGGAAGACCATCATCGTGCCAGTCTTCAGCGATTCCTTCGGCAAATAAGGACCCCATGAACCAGAGATGTCGGTAGATTTTGATATTGAATGGTAGCTCTCCTTCGGACACTGAAAGTTGAATATTCGAAACTTTGATTTTGAGAGTTAGGTCACTTACAGTATTGTTTGTACAGCTCCAAATCTCGGTATTTATCCAAATCAGTGAAAAACTCAATGGCTTTCTTCGGCGGGCCGAATTGTCGGGGCACTGTCCATTGCATTTTGCGGAATTCCGTTTTGCACATTATTTCATGAGGGAAGCTGTTCAAAATTGTGTCCTCATACGCCTGGTACTTTCTTGGTTCAATTGAAATGCGTGTGTACTTAAACCAGTCGTGTTTGTATTCAGGAAACTCTTCTGGAAAACGTTTACCGCGAGCGTCTCGAGACATAATGTAGACTGAAAGAAAATTGGTATTCATTGTTGAAARTTCAAATAAAGCACTTACTTTTGAACTCAGAATCAAGGATGTGTGGACGCTGAATTTTTTTATGAAGTCCGGTCATGATTTTGATTCCTCCCGGGAAGACTGAGATTCTTCTCTCAATTGCTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGTTATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATAGCGAATCTTCTTTTCATACTTTTCTTTTTCCGATGATATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGCTGAAGCTTCAGCATCTTTCCCATTATTTTTATCGATTACAAAGTCCTTTGTGACATGTAGCGTTGGTGTTCGTGGCGTTAGTGTTCGCGGCGTTACTTTCCTCGGCGAAAGAAGATTAACATCGTCCGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTGTATTCAGGAAACTCTTC</pcr_primer_p1>
		<pcr_primer_p2>TCTGCTGATATGTTCATCAATAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTTTGTATTCAGGAAACTCTTCTGGAAAACGTTTACCGCGAGCGTCTCGAGACATAATGTAGACTGAAAGAAAATTGGTATTCATTGTTGAAAGTTCAAATAAAGCACTTACTTTTGAACTCAGAATCAAGGATGTGTGGACGCTGAATTTTTTTATGAAGTCCGGTCATGATTTTGATTCCTCCCGGGAAGACTGAGATTCTTCTCTCAATTGCTCTCCAAAGATTATTGATGAACATATCAGCAGA</canonical_amplicon>
		<polymorphic_amplicon>TGTTTGTATTCAGGAAACTCTTCTGGAAAACGTTTACCGCGAGCGTCTCGAGACATAATGTAGACTGAAAGAAAATTGGTATTCATTGTTGAAARTTCAAATAAAGCACTTACTTTTGAACTCAGAATCAAGGATGTGTGGACGCTGAATTTTTTTATGAAGTCCGGTCATGATTTTGATTCCTCCCGGGAAGACTGAGATTCTTCTCTCAATTGCTCTCCAAAGATTATTGATGAACATATCAGCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35962</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>44316</contig_pos>
        <strand>+</strand>
        <context>TTTCCTCATC[A/G]TCCTCCTCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAGATTAACATCGTCCGGAATGATAATTTTGATAGGACTTTCCTCATC</left_flank>
        <right_flank>TCCTCCTCTTGGTCAGATGTTGCAGGCATTGGAGACATGATATGATATTG</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCAAGGATGTGTGGACGCTGAATTTTTTTATGAAGTCCGGTCATGATTTTGATTCCTCCCGGGAAGACTGAGATTCTTCTCTCAATTGCTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGTTATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATAGCGAATCTTCTTTTCATACTTTTCTTTTTCCGATGATATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGCTGAAGCTTCAGCATCTTTCCCATTATTTTTATCGATTACAAAGTCCTTTGTGACATGTAGCGTTGGTGTTCGTGGCGTTAGTGTTCGCGGCGTTACTTTCCTCGGCGAAAGAAGATTAACATCGTCCGGAATGATAATTTTGATAGGACTTTCCTCATCGTCCTCCTCTTGGTCAGATGTTGCAGGCATTGGAGACATGATATGATATTGACGACGTTTCCAAGCAATAGCGTTCATTGCATTTGACCTCATGTCTTCGATTTTACTTTTACCCTTTTCCACCAAGTACTGGTACCAATTGACAATGGCTGTGATTCGAGAAAACTGTTGGGCGTTTTGTTTCAAAATAAACTCGTTCGTCGTGTTAACAGTAGGCTGCTTGTACTCCGTCATGTTAACGCAGCATCTTCCAATGGTTACTTCCTCATATCTCCATTTTGCAACCTGACTTTTCTTAACGCCACAGTGCACTGAGAGCAGCGGGACAAATTTGGTTGCAATGAATCGGAAGGCCTCACGAATTTTGGTCTCATCATCCAGTTCGTCCTTGAAAACTTGATCCAGTTGTAGTTTGCAATAGACTCCCATAATAAATTCGTAGAGCTCATCAATAAGATCACATGCTTGTCTGAATCCGTTCCACTTGCAAAGTTGTTTCAA</canonical>
            <polymorphic>AATCAAGGATGTGTGGACGCTGAATTTTTTTATGAAGTCCGGTCATGATTTTGATTCCTCCCGGGAAGACTGAGATTCTTCTCTCAATTGCTCTCCAAAGATTATTGATGAACATATCAGCAGAAGGTGGAATATTGTTATTCAGCGAGTTCTCTTTCTCAATCTCTTCTCGTCGTTCTATCAAATAGCGAATCTTCTTTTCATACTTTTCTTTTTCCGATGATATGTTGTATGATCCAGACACGTAAACTGTACTTTGTTGCTGGCACACCTCTCCTAGTTGCCCGATATTCTGCACAAATGGATGTTGATAAGGCGAGACCACATGTCTTACTGTAGCTGAAGCTTCAGCATCTTTCCCATTATTTTTATCGATTACAAAGTCCTTTGTGACATGTAGCGTTGGTGTTCGTGGCGTTAGTGTTCGCGGCGTTACTTTCCTCGGCGAAAGAAGATTAACATCGTCCGGAATGATAATTTTGATAGGACTTTCCTCATCRTCCTCCTCTTGGTCAGATGTTGCAGGCATTGGAGACATGATATGATATTGACGACGTTTCCAAGCAATAGCGTTCATTGCATTTGACCTCATGTCTTCGATTTTACTTTTACCCTTTTCCACCAAGTACTGGTACCAATTGACAATGGCTGTGATTCGAGAAAACTGTTGGGCGTTTTGTTTCAAAATAAACTCGTTCGTCGTGTTAACAGTAGGCTGCTTGTACTCCGTCATGTTAACGCAGCATCTTCCAATGGTTACTTCCTCATATCTCCATTTTGCAACCTGACTTTTCTTAACGCCACAGTGCACTGAGAGCAGCGGGACAAATTTGGTTGCAATGAATCGGAAGGCCTCACGAATTTTGGTCTCATCATCCAGTTCGTCCTTGAAAACTTGATCCAGTTGTAGTTTGCAATAGACTCCCATAATAAATTCGTAGAGCTCATCAATAAGATCACATGCTTGTCTGAATCCGTTCCACTTGCAAAGTTGTTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAGTCCTTTGTGACATGTAG</pcr_primer_p1>
		<pcr_primer_p2>GTGGAAAAGGGTAAAAGTAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAAAGTCCTTTGTGACATGTAGCGTTGGTGTTCGTGGCGTTAGTGTTCGCGGCGTTACTTTCCTCGGCGAAAGAAGATTAACATCGTCCGGAATGATAATTTTGATAGGACTTTCCTCATCGTCCTCCTCTTGGTCAGATGTTGCAGGCATTGGAGACATGATATGATATTGACGACGTTTCCAAGCAATAGCGTTCATTGCATTTGACCTCATGTCTTCGATTTTACTTTTACCCTTTTCCAC</canonical_amplicon>
		<polymorphic_amplicon>CAAAGTCCTTTGTGACATGTAGCGTTGGTGTTCGTGGCGTTAGTGTTCGCGGCGTTACTTTCCTCGGCGAAAGAAGATTAACATCGTCCGGAATGATAATTTTGATAGGACTTTCCTCATCRTCCTCCTCTTGGTCAGATGTTGCAGGCATTGGAGACATGATATGATATTGACGACGTTTCCAAGCAATAGCGTTCATTGCATTTGACCTCATGTCTTCGATTTTACTTTTACCCTTTTCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35963</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>60044</contig_pos>
        <strand>+</strand>
        <context>TCATTTTAAT[A/T]AGCGARTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAACCAATTTCCAGCTTCTATAATAAATCCGTTTTTATTTCATTTTAAT</left_flank>
        <right_flank>AGCGAATTGTCATTGGTTCTGATGCTAGTGACCTGTTTGTGAAATATCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGCGTTTTTATCATGTTCATGTCACAATAGGTATTCGTTCATTTTCTACACACCATCTTACTGGGGTTCAATTTTTTATCTGTAATCTGTTTATCATGATTTTTTCTTTTTTCTTACAATTATCGAAATCGTAAATAAATAAATTAATGTATAAGGAATGGAGTTGTTCTGCTAATAATAATCAAAGCAGATTGATTACAGTTTCAAACACCAAAAACACTGAAATAGGCCTAAATTTACGTGCCGTTGCGATCCTTCTTTTCTATTATGAGTGATCACTGCTCTTGTTGCAAAAAGTGCATTACATCACGTAAGCTTGTGTTCTGATGTTCCCGTATTTCAATGCACTTTCGAAATATCTGATCAGAATGAAGCGGTGTTGGTTCGGGAGGAACTTCGATTTCAGTGTCACACAAGTGTCTTTTTAGAGGCATATCTAAAAAATTTTTAAACCAATTTCCAGCTTCTATAATAAATCCGTTTTTATTTCATTTTAATTAGCGAATTGTCATTGGTTCTGATGCTAGTGACCTGTTTGTGAAATATCTTTCGAGCAATATTCTTACAAAGAAGTGTTCCTAGATCGGAAGAACTACAAAAATCAAGAAAAAAAACATTCCAGAGAAAAATAAAGTATTCAGGAAATCTCAAAAAAGTTTCACACATTTCCAGGTCATCGACATTTTGGATTGACTCGATTTAGTTGAAATTTAGATTGTTTTCCAGTACTTATTTCAATATACATTGACCAGCACGTCATTTCTCGAATCATTCTTATTCCTTTTTCAGGCTTTTTTAGTTGCGGAAAAAATAATACATATTTGTTCTTTTCTGTTGTTGTTATCTGAACGAAATTAACGAGTTACAAGTTTTCGACAAACGTTGTGTCTTACATTTAGCTCTGCTTATTTCGGAATTTTTCATGAACGACATCAAGAACTGGATTAGACTAAATCGAATATGTTCTAGAAAAAGTCTGAATCAGAAGCAGTTACTGAA</canonical>
            <polymorphic>ATGCGTTTTTATCATGTTCATGTCACAATAGGTATTCGTTCATTTTCTACACACCATCTTACTGGGGTTCAATTTTTTATCTGTAATCTGTTTATCATGATTTTTTCTTTTTTCTTACAATTATCGAAATCGTAAATAAATAAATTAATGTATAAGGAATGGAGTTGTTCTGCTAATAATAATCAAAGCAGATTGATTACAGTTTCAAACACCAAAAACACTGAAATAGGCCTAAATTTACGTGCCGTTGCGATCCTTCTTTTCTATTATGAGTGATCACTGCTCTTGTTGCAAAAAGTGCATTACATCACGTAAGCTTGTGTTCTGATGTTCCCGTATTTCAATGCACTTTCGAAATATCTGATCAGAATGAAGCGGTGTTGGTTCGGGAGGAACTTCGATTTCAGTGTCACACAAGTGTCTTTTTAGAGGCATATCTAAAAAATTTTTAAACCAATTTCCAGCTTCTATAATAAATCCGTTTTTATTTCATTTTAATWAGCGAATTGTCATTGGTTCTGATGCTAGTGACCTGTTTGTGAAATATCTTTCGAGCAATATTCTTACAAAGAAGTGTTCCTAGATCGGAAGAACTACAAAAATCAAGAAAAAAAACATTCCAGAGAAAAATAAAGTATTCAGGAAATCTCAAAAAAGTTTCACACATTTCCAGGTCATCGACATTTTGGATTGACTCGATTTAGTTGAAATTTAGATTGTTTTCCAGTACTTATTTCAATATACATTGACCAGCACGTCATTTCTCGAATCATTCTTATTCCTTTTTCAGGCTTTTTTAGTTGCGGAAAAAATAATACATATTTGTTCTTTTCTGTTGTTGTTATCTGAACGAAATTAACGAGTTACAAGTTTTCGACAAACGTTGTGTCTTACATTTAGCTCTGCTTATTTCGGAATTTTTCATGAACGACATCAAGAACTGGATTAGACTAAATCGAATATGTTCTAGAAAAAGTCTGAATCAGAAGCAGTTACTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>209 204 145 92 85 70 62 48 41 24 12 8</canonical_bands>
                <polymorphic_bands>209 204 145 92 85 70 62 49 48 24 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTGTCACACAAGTGTCTTTTTAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAGATTTCCTGAATACTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTGTCACACAAGTGTCTTTTTAGAGGCATATCTAAAAAATTTTTAAACCAATTTCCAGCTTCTATAATAAATCCGTTTTTATTTCATTTTAATTAGCGAATTGTCATTGGTTCTGATGCTAGTGACCTGTTTGTGAAATATCTTTCGAGCAATATTCTTACAAAGAAGTGTTCCTAGATCGGAAGAACTACAAAAATCAAGAAAAAAAACATTCCAGAGAAAAATAAAGTATTCAGGAAATCTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AGTGTCACACAAGTGTCTTTTTAGAGGCATATCTAAAAAATTTTTAAACCAATTTCCAGCTTCTATAATAAATCCGTTTTTATTTCATTTTAATWAGCGAATTGTCATTGGTTCTGATGCTAGTGACCTGTTTGTGAAATATCTTTCGAGCAATATTCTTACAAAGAAGTGTTCCTAGATCGGAAGAACTACAAAAATCAAGAAAAAAAACATTCCAGAGAAAAATAAAGTATTCAGGAAATCTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35964</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>60139</contig_pos>
        <strand>+</strand>
        <context>TCGGAAGAAC[C/G]ACAAAAATCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TATCTTTCGAGCAATATTCTTACAAAGAAGTGTTCCTAGATCGGAAGAAC</left_flank>
        <right_flank>ACAAAAATCAAGAAAAAAAACATTCCAGAGAAAAATAAAGTATTCAGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGATTTTTTCTTTTTTCTTACAATTATCGAAATCGTAAATAAATAAATTAATGTATAAGGAATGGAGTTGTTCTGCTAATAATAATCAAAGCAGATTGATTACAGTTTCAAACACCAAAAACACTGAAATAGGCCTAAATTTACGTGCCGTTGCGATCCTTCTTTTCTATTATGAGTGATCACTGCTCTTGTTGCAAAAAGTGCATTACATCACGTAAGCTTGTGTTCTGATGTTCCCGTATTTCAATGCACTTTCGAAATATCTGATCAGAATGAAGCGGTGTTGGTTCGGGAGGAACTTCGATTTCAGTGTCACACAAGTGTCTTTTTAGAGGCATATCTAAAAAATTTTTAAACCAATTTCCAGCTTCTATAATAAATCCGTTTTTATTTCATTTTAATTAGCGAATTGTCATTGGTTCTGATGCTAGTGACCTGTTTGTGAAATATCTTTCGAGCAATATTCTTACAAAGAAGTGTTCCTAGATCGGAAGAACTACAAAAATCAAGAAAAAAAACATTCCAGAGAAAAATAAAGTATTCAGGAAATCTCAAAAAAGTTTCACACATTTCCAGGTCATCGACATTTTGGATTGACTCGATTTAGTTGAAATTTAGATTGTTTTCCAGTACTTATTTCAATATACATTGACCAGCACGTCATTTCTCGAATCATTCTTATTCCTTTTTCAGGCTTTTTTAGTTGCGGAAAAAATAATACATATTTGTTCTTTTCTGTTGTTGTTATCTGAACGAAATTAACGAGTTACAAGTTTTCGACAAACGTTGTGTCTTACATTTAGCTCTGCTTATTTCGGAATTTTTCATGAACGACATCAAGAACTGGATTAGACTAAATCGAATATGTTCTAGAAAAAGTCTGAATCAGAAGCAGTTACTGAAATGTTCAACATATCAAAGTACAGATATACTATTGAAAATCTTAGATTTTCTGATAACAAGAAACAACTCGTTTGTTTTTTTCAGAAACGGCTATT</canonical>
            <polymorphic>CATGATTTTTTCTTTTTTCTTACAATTATCGAAATCGTAAATAAATAAATTAATGTATAAGGAATGGAGTTGTTCTGCTAATAATAATCAAAGCAGATTGATTACAGTTTCAAACACCAAAAACACTGAAATAGGCCTAAATTTACGTGCCGTTGCGATCCTTCTTTTCTATTATGAGTGATCACTGCTCTTGTTGCAAAAAGTGCATTACATCACGTAAGCTTGTGTTCTGATGTTCCCGTATTTCAATGCACTTTCGAAATATCTGATCAGAATGAAGCGGTGTTGGTTCGGGAGGAACTTCGATTTCAGTGTCACACAAGTGTCTTTTTAGAGGCATATCTAAAAAATTTTTAAACCAATTTCCAGCTTCTATAATAAATCCGTTTTTATTTCATTTTAATTAGCGAATTGTCATTGGTTCTGATGCTAGTGACCTGTTTGTGAAATATCTTTCGAGCAATATTCTTACAAAGAAGTGTTCCTAGATCGGAAGAACSACAAAAATCAAGAAAAAAAACATTCCAGAGAAAAATAAAGTATTCAGGAAATCTCAAAAAAGTTTCACACATTTCCAGGTCATCGACATTTTGGATTGACTCGATTTAGTTGAAATTTAGATTGTTTTCCAGTACTTATTTCAATATACATTGACCAGCACGTCATTTCTCGAATCATTCTTATTCCTTTTTCAGGCTTTTTTAGTTGCGGAAAAAATAATACATATTTGTTCTTTTCTGTTGTTGTTATCTGAACGAAATTAACGAGTTACAAGTTTTCGACAAACGTTGTGTCTTACATTTAGCTCTGCTTATTTCGGAATTTTTCATGAACGACATCAAGAACTGGATTAGACTAAATCGAATATGTTCTAGAAAAAGTCTGAATCAGAAGCAGTTACTGAAATGTTCAACATATCAAAGTACAGATATACTATTGAAAATCTTAGATTTTCTGATAACAAGAAACAACTCGTTTGTTTTTTTCAGAAACGGCTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAATTTCCAGCTTCTATAATAA</pcr_primer_p1>
		<pcr_primer_p2>CTAAATCGAGTCAATCCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCAATTTCCAGCTTCTATAATAAATCCGTTTTTATTTCATTTTAATTAGCGAATTGTCATTGGTTCTGATGCTAGTGACCTGTTTGTGAAATATCTTTCGAGCAATATTCTTACAAAGAAGTGTTCCTAGATCGGAAGAACTACAAAAATCAAGAAAAAAAACATTCCAGAGAAAAATAAAGTATTCAGGAAATCTCAAAAAAGTTTCACACATTTCCAGGTCATCGACATTTTGGATTGACTCGATTTAG</canonical_amplicon>
		<polymorphic_amplicon>CCAATTTCCAGCTTCTATAATAAATCCGTTTTTATTTCATTTTAATTAGCGAATTGTCATTGGTTCTGATGCTAGTGACCTGTTTGTGAAATATCTTTCGAGCAATATTCTTACAAAGAAGTGTTCCTAGATCGGAAGAACSACAAAAATCAAGAAAAAAAACATTCCAGAGAAAAATAAAGTATTCAGGAAATCTCAAAAAAGTTTCACACATTTCCAGGTCATCGACATTTTGGATTGACTCGATTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35965</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>61949</contig_pos>
        <strand>+</strand>
        <context>TTTATTGTAC[C/T]ATTTTTTTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGTCAATGGGTTTTATTTTTCTCGAATTTCAAATTATCCTTTATTGTAC</left_flank>
        <right_flank>ATTTTTTTGTACTCATCTACTTATATGTTTCTTAATAGTTGTTCATTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGGACCAGAGAAGCCAGAGCAGCTAAGATTAGAGAAAAAGAGAAAGCGAGAAACTGGAGTAACTAAGAAGACGACAGAAAAATTATCCGTGGTTGCCAGGCACGCCTAAGCTCTCCCCAGTCGCTCTTCATGTCCTCCTAGCTATCGGACGTTTAGTATATATTTTCTTTGGGTCGACTCAATGTAAATGTAAGTTATTAGAATGCTTTTCTAAATAAGTAATAATTTGATTCAGATCATCTATATCTTAATCTACGTCATGTTATTCAACATCAACTTTTTATATTCTTCAAGGTGAGAAAACAATGACGTCATTTTTCCATTTCAATATAATTTTTCCAGAGTTGCACAATAATCACTTCATTCTACCATATACAGACTTCATGTTTATCACAATCAACGGGTCGACTCAGGCAATTTTGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTTCTCGAATTTCAAATTATCCTTTATTGTACCATTTTTTTGTACTCATCTACTTATATGTTTCTTAATAGTTGTTCATTATTATTTGATAGTCTTTTAAAAAATTGTTAAATCATTTCAAGAAGCAGTTAAAAGCTAAGAGCAAGAAGACGAGTCTAATTTGAGTTAGAGTTGAGAATTTGTTTATTTGATGAGTAGCGTTTTTTGTTTATGTTTCCACATCAAATTTGTTTCCCTCTTACAATGTTCTACCTAACTCATTTTTTGAATACCTCTGCGGCAGGATATTGCTAATTTAGAGATAAGTTTTTTTTGTTTTTGGACCAGCAAGATAACCGCCATCGCAGCCAAATTGTTTTTTTTTTGATGTATAGTTTTAGTTGTACTGACTATTCCATCCACCTGGCCGTCCAAATTTTTTTTTGTTTTTAGTAACCAACTGGCAATGTGCGCTGGATCCCAAAAATTGTCCCGATTCATTTTCTCTTCATGTAAATTAAATAAAGATTGATAACTTTCTTTTTTTTCAAATG</canonical>
            <polymorphic>AGGGACCAGAGAAGCCAGAGCAGCTAAGATTAGAGAAAAAGAGAAAGCGAGAAACTGGAGTAACTAAGAAGACGACAGAAAAATTATCCGTGGTTGCCAGGCACGCCTAAGCTCTCCCCAGTCGCTCTTCATGTCCTCCTAGCTATCGGACGTTTAGTATATATTTTCTTTGGGTCGACTCAATGTAAATGTAAGTTATTAGAATGCTTTTCTAAATAAGTAATAATTTGATTCAGATCATCTATATCTTAATCTACGTCATGTTATTCAACATCAACTTTTTATATTCTTCAAGGTGAGAAAACAATGACGTCATTTTTCCATTTCAATATAATTTTTCCAGAGTTGCACAATAATCACTTCATTCTACCATATACAGACTTCATGTTTATCACAATCAACGGGTCGACTCAGGCAATTTTGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTTCTCGAATTTCAAATTATCCTTTATTGTACYATTTTTTTGTACTCATCTACTTATATGTTTCTTAATAGTTGTTCATTATTATTTGATAGTCTTTTAAAAAATTGTTAAATCATTTCAAGAAGCAGTTAAAAGCTAAGAGCAAGAAGACGAGTCTAATTTGAGTTAGAGTTGAGAATTTGTTTATTTGATGAGTAGCGTTTTTTGTTTATGTTTCCACATCAAATTTGTTTCCCTCTTACAATGTTCTACCTAACTCATTTTTTGAATACCTCTGCGGCAGGATATTGCTAATTTAGAGATAAGTTTTTTTTGTTTTTGGACCAGCAAGATAACCGCCATCGCAGCCAAATTGTTTTTTTTTTGATGTATAGTTTTAGTTGTACTGACTATTCCATCCACCTGGCCGTCCAAATTTTTTTTTGTTTTTAGTAACCAACTGGCAATGTGCGCTGGATCCCAAAAATTGTCCCGATTCATTTTCTCTTCATGTAAATTAAATAAAGATTGATAACTTTCTTTTTTTTCAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGACTTCATGTTTATCACAATC</pcr_primer_p1>
		<pcr_primer_p2>TAGACTCGTCTTCTTGCTCTTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACAGACTTCATGTTTATCACAATCAACGGGTCGACTCAGGCAATTTTGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTTCTCGAATTTCAAATTATCCTTTATTGTACCATTTTTTTGTACTCATCTACTTATATGTTTCTTAATAGTTGTTCATTATTATTTGATAGTCTTTTAAAAAATTGTTAAATCATTTCAAGAAGCAGTTAAAAGCTAAGAGCAAGAAGACGAGTCTA</canonical_amplicon>
		<polymorphic_amplicon>ACAGACTTCATGTTTATCACAATCAACGGGTCGACTCAGGCAATTTTGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTTCTCGAATTTCAAATTATCCTTTATTGTACYATTTTTTTGTACTCATCTACTTATATGTTTCTTAATAGTTGTTCATTATTATTTGATAGTCTTTTAAAAAATTGTTAAATCATTTCAAGAAGCAGTTAAAAGCTAAGAGCAAGAAGACGAGTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35966</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>62137</contig_pos>
        <strand>+</strand>
        <context>ATGTTTCCAM[A/C]TCAAATTTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTGAGAATTTGTTTATTTGATGAGTAGCGTTTTTTGTTTATGTTTCCAC</left_flank>
        <right_flank>TCAAATTTGTTTCCCTCTTACAATGTTCTACCTAACTCATTTTTTGAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTAAGTTATTAGAATGCTTTTCTAAATAAGTAATAATTTGATTCAGATCATCTATATCTTAATCTACGTCATGTTATTCAACATCAACTTTTTATATTCTTCAAGGTGAGAAAACAATGACGTCATTTTTCCATTTCAATATAATTTTTCCAGAGTTGCACAATAATCACTTCATTCTACCATATACAGACTTCATGTTTATCACAATCAACGGGTCGACTCAGGCAATTTTGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTTCTCGAATTTCAAATTATCCTTTATTGTACCATTTTTTTGTACTCATCTACTTATATGTTTCTTAATAGTTGTTCATTATTATTTGATAGTCTTTTAAAAAATTGTTAAATCATTTCAAGAAGCAGTTAAAAGCTAAGAGCAAGAAGACGAGTCTAATTTGAGTTAGAGTTGAGAATTTGTTTATTTGATGAGTAGCGTTTTTTGTTTATGTTTCCACATCAAATTTGTTTCCCTCTTACAATGTTCTACCTAACTCATTTTTTGAATACCTCTGCGGCAGGATATTGCTAATTTAGAGATAAGTTTTTTTTGTTTTTGGACCAGCAAGATAACCGCCATCGCAGCCAAATTGTTTTTTTTTTGATGTATAGTTTTAGTTGTACTGACTATTCCATCCACCTGGCCGTCCAAATTTTTTTTTGTTTTTAGTAACCAACTGGCAATGTGCGCTGGATCCCAAAAATTGTCCCGATTCATTTTCTCTTCATGTAAATTAAATAAAGATTGATAACTTTCTTTTTTTTCAAATGTGTGAATGAAAAAGAAAATAAAGTTTCCCTATTCAAGTTCTGATTGGAGTTCAAAATGGAGCCAAATATAAGACACAAAGACAAAAGAACTGAGGCCGTATTTATTTATTTATTTATTTATTTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACAG</canonical>
            <polymorphic>ATGTAAGTTATTAGAATGCTTTTCTAAATAAGTAATAATTTGATTCAGATCATCTATATCTTAATCTACGTCATGTTATTCAACATCAACTTTTTATATTCTTCAAGGTGAGAAAACAATGACGTCATTTTTCCATTTCAATATAATTTTTCCAGAGTTGCACAATAATCACTTCATTCTACCATATACAGACTTCATGTTTATCACAATCAACGGGTCGACTCAGGCAATTTTGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTTCTCGAATTTCAAATTATCCTTTATTGTACCATTTTTTTGTACTCATCTACTTATATGTTTCTTAATAGTTGTTCATTATTATTTGATAGTCTTTTAAAAAATTGTTAAATCATTTCAAGAAGCAGTTAAAAGCTAAGAGCAAGAAGACGAGTCTAATTTGAGTTAGAGTTGAGAATTTGTTTATTTGATGAGTAGCGTTTTTTGTTTATGTTTCCACMTCAAATTTGTTTCCCTCTTACAATGTTCTACCTAACTCATTTTTTGAATACCTCTGCGGCAGGATATTGCTAATTTAGAGATAAGTTTTTTTTGTTTTTGGACCAGCAAGATAACCGCCATCGCAGCCAAATTGTTTTTTTTTTGATGTATAGTTTTAGTTGTACTGACTATTCCATCCACCTGGCCGTCCAAATTTTTTTTTGTTTTTAGTAACCAACTGGCAATGTGCGCTGGATCCCAAAAATTGTCCCGATTCATTTTCTCTTCATGTAAATTAAATAAAGATTGATAACTTTCTTTTTTTTCAAATGTGTGAATGAAAAAGAAAATAAAGTTTCCCTATTCAAGTTCTGATTGGAGTTCAAAATGGAGCCAAATATAAGACACAAAGACAAAAGAACTGAGGCCGTATTTATTTATTTATTTATTTATTTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTGAGTTAGAGTTGAGAATTTG</pcr_primer_p1>
		<pcr_primer_p2>GTGGATGGAATAGTCAGTACAAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATTTGAGTTAGAGTTGAGAATTTGTTTATTTGATGAGTAGCGTTTTTTGTTTATGTTTCCACATCAAATTTGTTTCCCTCTTACAATGTTCTACCTAACTCATTTTTTGAATACCTCTGCGGCAGGATATTGCTAATTTAGAGATAAGTTTTTTTTGTTTTTGGACCAGCAAGATAACCGCCATCGCAGCCAAATTGTTTTTTTTTTGATGTATAGTTTTAGTTGTACTGACTATTCCATCCAC</canonical_amplicon>
		<polymorphic_amplicon>AATTTGAGTTAGAGTTGAGAATTTGTTTATTTGATGAGTAGCGTTTTTTGTTTATGTTTCCACMTCAAATTTGTTTCCCTCTTACAATGTTCTACCTAACTCATTTTTTGAATACCTCTGCGGCAGGATATTGCTAATTTAGAGATAAGTTTTTTTTGTTTTTGGACCAGCAAGATAACCGCCATCGCAGCCAAATTGTTTTTTTTTTGATGTATAGTTTTAGTTGTACTGACTATTCCATCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35967</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>62764</contig_pos>
        <strand>+</strand>
        <context>GACGAGGGCT[C/T]CACCGGAMAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACGAGGGCT</left_flank>
        <right_flank>CACCGGACACACTTTGACGGGTAAAGAGTTCCAACATCTGATTACTATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAATTGTTTTTTTTTTGATGTATAGTTTTAGTTGTACTGACTATTCCATCCACCTGGCCGTCCAAATTTTTTTTTGTTTTTAGTAACCAACTGGCAATGTGCGCTGGATCCCAAAAATTGTCCCGATTCATTTTCTCTTCATGTAAATTAAATAAAGATTGATAACTTTCTTTTTTTTCAAATGTGTGAATGAAAAAGAAAATAAAGTTTCCCTATTCAAGTTCTGATTGGAGTTCAAAATGGAGCCAAATATAAGACACAAAGACAAAAGAACTGAGGCCGTATTTATTTATTTATTTATTTATTTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATAAAGGATAAACCGAGTTAGTAATTAGTTGAATTCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACGAGGGCTCCACCGGACACACTTTGACGGGTAAAGAGTTCCAACATCTGATTACTATATTAGAGAGAAATCGAGAAGATATTTTTGTTGAGTTTTTGATAAGTGATTTGAGATAGTATTTGTGACGTCGCAATGATCCAGCATGATTAAATATTTCGAAAATTGGAACCTCCATGATAATTTCTTTGGAAACAATAATTTTATACGTGTAGACCAAATCATTATAGAGCCTGCGATACTCCAAGGAACTTAGCTAACATTCTTCCAGTGCTTCAAAGTATGAAGTGTATGCCATCCTGAATTTTTTGAAAACTCTGAAAACAAATGACTTTTGCACCGATTCCAATTTTATAATATGATCCTTTAGGATTGGAGAAGTGACTATCGTTCCATATTCGAGTAAAGGGCGTATGTAAATTGTATAGCATTTTATAAAAACACTCCACGATGCGTTTTTTAGAATGGAAAAGAACATGTTGATCCTATTCATGAACGAACGTATTCATGAAC</canonical>
            <polymorphic>CAAATTGTTTTTTTTTTGATGTATAGTTTTAGTTGTACTGACTATTCCATCCACCTGGCCGTCCAAATTTTTTTTTGTTTTTAGTAACCAACTGGCAATGTGCGCTGGATCCCAAAAATTGTCCCGATTCATTTTCTCTTCATGTAAATTAAATAAAGATTGATAACTTTCTTTTTTTTCAAATGTGTGAATGAAAAAGAAAATAAAGTTTCCCTATTCAAGTTCTGATTGGAGTTCAAAATGGAGCCAAATATAAGACACAAAGACAAAAGAACTGAGGCCGTATTTATTTATTTATTTATTTATTTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATAAAGGATAAACCGAGTTAGTAATTAGTTGAATTCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACGAGGGCTYCACCGGACACACTTTGACGGGTAAAGAGTTCCAACATCTGATTACTATATTAGAGAGAAATCGAGAAGATATTTTTGTTGAGTTTTTGATAAGTGATTTGAGATAGTATTTGTGACGTCGCAATGATCCAGCATGATTAAATATTTCGAAAATTGGAACCTCCATGATAATTTCTTTGGAAACAATAATTTTATACGTGTAGACCAAATCATTATAGAGCCTGCGATACTCCAAGGAACTTAGCTAACATTCTTCCAGTGCTTCAAAGTATGAAGTGTATGCCATCCTGAATTTTTTGAAAACTCTGAAAACAAATGACTTTTGCACCGATTCCAATTTTATAATATGATCCTTTAGGATTGGAGAAGTGACTATCGTTCCATATTCGAGTAAAGGGCGTATGTAAATTGTATAGCATTTTATAAAAACACTCCACGATGCGTTTTTTAGAATGGAAAAGAACATGTTGATCCTATTCATGAACGAACGTATTCATGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>343 253 159 136 109</canonical_bands>
                <polymorphic_bands>412 343 136 109</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAACACGTGAAATGTCTATGAAA</pcr_primer_p1>
		<pcr_primer_p2>CAACAAAAATATCTTCTCGATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATAAAGGATAAACCGAGTTAGTAATTAGTTGAATTCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACGAGGGCTCCACCGGACACACTTTGACGGGTAAAGAGTTCCAACATCTGATTACTATATTAGAGAGAAATCGAGAAGATATTTTTGTTG</canonical_amplicon>
		<polymorphic_amplicon>TAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATAAAGGATAAACCGAGTTAGTAATTAGTTGAATTCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACGAGGGCTYCACCGGACACACTTTGACGGGTAAAGAGTTCCAACATCTGATTACTATATTAGAGAGAAATCGAGAAGATATTTTTGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35968</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>62772</contig_pos>
        <strand>+</strand>
        <context>CTYCACCGGA[A/C]ACACTTTGRC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CACAGGATAATAGTCGATTTTTGAAAGCCGCTGACGAGGGCTCCACCGGA</left_flank>
        <right_flank>ACACTTTGACGGGTAAAGAGTTCCAACATCTGATTACTATATTAGAGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTTTTGATGTATAGTTTTAGTTGTACTGACTATTCCATCCACCTGGCCGTCCAAATTTTTTTTTGTTTTTAGTAACCAACTGGCAATGTGCGCTGGATCCCAAAAATTGTCCCGATTCATTTTCTCTTCATGTAAATTAAATAAAGATTGATAACTTTCTTTTTTTTCAAATGTGTGAATGAAAAAGAAAATAAAGTTTCCCTATTCAAGTTCTGATTGGAGTTCAAAATGGAGCCAAATATAAGACACAAAGACAAAAGAACTGAGGCCGTATTTATTTATTTATTTATTTATTTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATAAAGGATAAACCGAGTTAGTAATTAGTTGAATTCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACGAGGGCTCCACCGGACACACTTTGACGGGTAAAGAGTTCCAACATCTGATTACTATATTAGAGAGAAATCGAGAAGATATTTTTGTTGAGTTTTTGATAAGTGATTTGAGATAGTATTTGTGACGTCGCAATGATCCAGCATGATTAAATATTTCGAAAATTGGAACCTCCATGATAATTTCTTTGGAAACAATAATTTTATACGTGTAGACCAAATCATTATAGAGCCTGCGATACTCCAAGGAACTTAGCTAACATTCTTCCAGTGCTTCAAAGTATGAAGTGTATGCCATCCTGAATTTTTTGAAAACTCTGAAAACAAATGACTTTTGCACCGATTCCAATTTTATAATATGATCCTTTAGGATTGGAGAAGTGACTATCGTTCCATATTCGAGTAAAGGGCGTATGTAAATTGTATAGCATTTTATAAAAACACTCCACGATGCGTTTTTTAGAATGGAAAAGAACATGTTGATCCTATTCATGAACGAACGTATTCATGAACATTTACCT</canonical>
            <polymorphic>TTTTTTTTTGATGTATAGTTTTAGTTGTACTGACTATTCCATCCACCTGGCCGTCCAAATTTTTTTTTGTTTTTAGTAACCAACTGGCAATGTGCGCTGGATCCCAAAAATTGTCCCGATTCATTTTCTCTTCATGTAAATTAAATAAAGATTGATAACTTTCTTTTTTTTCAAATGTGTGAATGAAAAAGAAAATAAAGTTTCCCTATTCAAGTTCTGATTGGAGTTCAAAATGGAGCCAAATATAAGACACAAAGACAAAAGAACTGAGGCCGTATTTATTTATTTATTTATTTATTTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATAAAGGATAAACCGAGTTAGTAATTAGTTGAATTCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACGAGGGCTCCACCGGAMACACTTTGACGGGTAAAGAGTTCCAACATCTGATTACTATATTAGAGAGAAATCGAGAAGATATTTTTGTTGAGTTTTTGATAAGTGATTTGAGATAGTATTTGTGACGTCGCAATGATCCAGCATGATTAAATATTTCGAAAATTGGAACCTCCATGATAATTTCTTTGGAAACAATAATTTTATACGTGTAGACCAAATCATTATAGAGCCTGCGATACTCCAAGGAACTTAGCTAACATTCTTCCAGTGCTTCAAAGTATGAAGTGTATGCCATCCTGAATTTTTTGAAAACTCTGAAAACAAATGACTTTTGCACCGATTCCAATTTTATAATATGATCCTTTAGGATTGGAGAAGTGACTATCGTTCCATATTCGAGTAAAGGGCGTATGTAAATTGTATAGCATTTTATAAAAACACTCCACGATGCGTTTTTTAGAATGGAAAAGAACATGTTGATCCTATTCATGAACGAACGTATTCATGAACATTTACCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>116 85 85 84 73 73 71 61 60 49 49 45 44 43 19 17 7 6 5 4 2 2</canonical_bands>
                <polymorphic_bands>116 85 85 84 73 73 71 61 60 49 49 45 44 43 19 17 9 6 5 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAACACGTGAAATGTCTATGAAA</pcr_primer_p1>
		<pcr_primer_p2>CAACAAAAATATCTTCTCGATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATAAAGGATAAACCGAGTTAGTAATTAGTTGAATTCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACGAGGGCTCCACCGGACACACTTTGACGGGTAAAGAGTTCCAACATCTGATTACTATATTAGAGAGAAATCGAGAAGATATTTTTGTTG</canonical_amplicon>
		<polymorphic_amplicon>TAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATAAAGGATAAACCGAGTTAGTAATTAGTTGAATTCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACGAGGGCTCCACCGGAMACACTTTGACGGGTAAAGAGTTCCAACATCTGATTACTATATTAGAGAGAAATCGAGAAGATATTTTTGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35969</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>62781</contig_pos>
        <strand>+</strand>
        <context>AMACACTTTG[A/G]CGGGTAAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAGTCGATTTTTGAAAGCCGCTGACGAGGGCTCCACCGGACACACTTTG</left_flank>
        <right_flank>CGGGTAAAGAGTTCCAACATCTGATTACTATATTAGAGAGAAATCGAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGTATAGTTTTAGTTGTACTGACTATTCCATCCACCTGGCCGTCCAAATTTTTTTTTGTTTTTAGTAACCAACTGGCAATGTGCGCTGGATCCCAAAAATTGTCCCGATTCATTTTCTCTTCATGTAAATTAAATAAAGATTGATAACTTTCTTTTTTTTCAAATGTGTGAATGAAAAAGAAAATAAAGTTTCCCTATTCAAGTTCTGATTGGAGTTCAAAATGGAGCCAAATATAAGACACAAAGACAAAAGAACTGAGGCCGTATTTATTTATTTATTTATTTATTTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATAAAGGATAAACCGAGTTAGTAATTAGTTGAATTCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACGAGGGCTCCACCGGACACACTTTGACGGGTAAAGAGTTCCAACATCTGATTACTATATTAGAGAGAAATCGAGAAGATATTTTTGTTGAGTTTTTGATAAGTGATTTGAGATAGTATTTGTGACGTCGCAATGATCCAGCATGATTAAATATTTCGAAAATTGGAACCTCCATGATAATTTCTTTGGAAACAATAATTTTATACGTGTAGACCAAATCATTATAGAGCCTGCGATACTCCAAGGAACTTAGCTAACATTCTTCCAGTGCTTCAAAGTATGAAGTGTATGCCATCCTGAATTTTTTGAAAACTCTGAAAACAAATGACTTTTGCACCGATTCCAATTTTATAATATGATCCTTTAGGATTGGAGAAGTGACTATCGTTCCATATTCGAGTAAAGGGCGTATGTAAATTGTATAGCATTTTATAAAAACACTCCACGATGCGTTTTTTAGAATGGAAAAGAACATGTTGATCCTATTCATGAACGAACGTATTCATGAACATTTACCTAGGTAAGTG</canonical>
            <polymorphic>GATGTATAGTTTTAGTTGTACTGACTATTCCATCCACCTGGCCGTCCAAATTTTTTTTTGTTTTTAGTAACCAACTGGCAATGTGCGCTGGATCCCAAAAATTGTCCCGATTCATTTTCTCTTCATGTAAATTAAATAAAGATTGATAACTTTCTTTTTTTTCAAATGTGTGAATGAAAAAGAAAATAAAGTTTCCCTATTCAAGTTCTGATTGGAGTTCAAAATGGAGCCAAATATAAGACACAAAGACAAAAGAACTGAGGCCGTATTTATTTATTTATTTATTTATTTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATAAAGGATAAACCGAGTTAGTAATTAGTTGAATTCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACGAGGGCTCCACCGGACACACTTTGRCGGGTAAAGAGTTCCAACATCTGATTACTATATTAGAGAGAAATCGAGAAGATATTTTTGTTGAGTTTTTGATAAGTGATTTGAGATAGTATTTGTGACGTCGCAATGATCCAGCATGATTAAATATTTCGAAAATTGGAACCTCCATGATAATTTCTTTGGAAACAATAATTTTATACGTGTAGACCAAATCATTATAGAGCCTGCGATACTCCAAGGAACTTAGCTAACATTCTTCCAGTGCTTCAAAGTATGAAGTGTATGCCATCCTGAATTTTTTGAAAACTCTGAAAACAAATGACTTTTGCACCGATTCCAATTTTATAATATGATCCTTTAGGATTGGAGAAGTGACTATCGTTCCATATTCGAGTAAAGGGCGTATGTAAATTGTATAGCATTTTATAAAAACACTCCACGATGCGTTTTTTAGAATGGAAAAGAACATGTTGATCCTATTCATGAACGAACGTATTCATGAACATTTACCTAGGTAAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACACGTGAAATGTCTATGAAA</pcr_primer_p1>
		<pcr_primer_p2>CAACAAAAATATCTTCTCGATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATAAAGGATAAACCGAGTTAGTAATTAGTTGAATTCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACGAGGGCTCCACCGGACACACTTTGACGGGTAAAGAGTTCCAACATCTGATTACTATATTAGAGAGAAATCGAGAAGATATTTTTGTTG</canonical_amplicon>
		<polymorphic_amplicon>TAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATAAAGGATAAACCGAGTTAGTAATTAGTTGAATTCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACGAGGGCTCCACCGGACACACTTTGRCGGGTAAAGAGTTCCAACATCTGATTACTATATTAGAGAGAAATCGAGAAGATATTTTTGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35970</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>62798</contig_pos>
        <strand>+</strand>
        <context>AAGAGTTCCA[A/G]CATCTGATTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCGCTGACGAGGGCTCCACCGGACACACTTTGACGGGTAAAGAGTTCCA</left_flank>
        <right_flank>CATCTGATTACTATATTAGAGAGAAATCGAGAAGATATTTTTGTTGAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACTGACTATTCCATCCACCTGGCCGTCCAAATTTTTTTTTGTTTTTAGTAACCAACTGGCAATGTGCGCTGGATCCCAAAAATTGTCCCGATTCATTTTCTCTTCATGTAAATTAAATAAAGATTGATAACTTTCTTTTTTTTCAAATGTGTGAATGAAAAAGAAAATAAAGTTTCCCTATTCAAGTTCTGATTGGAGTTCAAAATGGAGCCAAATATAAGACACAAAGACAAAAGAACTGAGGCCGTATTTATTTATTTATTTATTTATTTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATAAAGGATAAACCGAGTTAGTAATTAGTTGAATTCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACGAGGGCTCCACCGGACACACTTTGACGGGTAAAGAGTTCCAACATCTGATTACTATATTAGAGAGAAATCGAGAAGATATTTTTGTTGAGTTTTTGATAAGTGATTTGAGATAGTATTTGTGACGTCGCAATGATCCAGCATGATTAAATATTTCGAAAATTGGAACCTCCATGATAATTTCTTTGGAAACAATAATTTTATACGTGTAGACCAAATCATTATAGAGCCTGCGATACTCCAAGGAACTTAGCTAACATTCTTCCAGTGCTTCAAAGTATGAAGTGTATGCCATCCTGAATTTTTTGAAAACTCTGAAAACAAATGACTTTTGCACCGATTCCAATTTTATAATATGATCCTTTAGGATTGGAGAAGTGACTATCGTTCCATATTCGAGTAAAGGGCGTATGTAAATTGTATAGCATTTTATAAAAACACTCCACGATGCGTTTTTTAGAATGGAAAAGAACATGTTGATCCTATTCATGAACGAACGTATTCATGAACATTTACCTAGGTAAGTGCATTTACCAAGGAAAAT</canonical>
            <polymorphic>GTACTGACTATTCCATCCACCTGGCCGTCCAAATTTTTTTTTGTTTTTAGTAACCAACTGGCAATGTGCGCTGGATCCCAAAAATTGTCCCGATTCATTTTCTCTTCATGTAAATTAAATAAAGATTGATAACTTTCTTTTTTTTCAAATGTGTGAATGAAAAAGAAAATAAAGTTTCCCTATTCAAGTTCTGATTGGAGTTCAAAATGGAGCCAAATATAAGACACAAAGACAAAAGAACTGAGGCCGTATTTATTTATTTATTTATTTATTTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATAAAGGATAAACCGAGTTAGTAATTAGTTGAATTCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACGAGGGCTCCACCGGACACACTTTGACGGGTAAAGAGTTCCARCATCTGATTACTATATTAGAGAGAAATCGAGAAGATATTTTTGTTGAGTTTTTGATAAGTGATTTGAGATAGTATTTGTGACGTCGCAATGATCCAGCATGATTAAATATTTCGAAAATTGGAACCTCCATGATAATTTCTTTGGAAACAATAATTTTATACGTGTAGACCAAATCATTATAGAGCCTGCGATACTCCAAGGAACTTAGCTAACATTCTTCCAGTGCTTCAAAGTATGAAGTGTATGCCATCCTGAATTTTTTGAAAACTCTGAAAACAAATGACTTTTGCACCGATTCCAATTTTATAATATGATCCTTTAGGATTGGAGAAGTGACTATCGTTCCATATTCGAGTAAAGGGCGTATGTAAATTGTATAGCATTTTATAAAAACACTCCACGATGCGTTTTTTAGAATGGAAAAGAACATGTTGATCCTATTCATGAACGAACGTATTCATGAACATTTACCTAGGTAAGTGCATTTACCAAGGAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGATAATAGTCGATTTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>TGATTTGGTCTACACGTATAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAGGATAATAGTCGATTTTTGAAAGCCGCTGACGAGGGCTCCACCGGACACACTTTGACGGGTAAAGAGTTCCAACATCTGATTACTATATTAGAGAGAAATCGAGAAGATATTTTTGTTGAGTTTTTGATAAGTGATTTGAGATAGTATTTGTGACGTCGCAATGATCCAGCATGATTAAATATTTCGAAAATTGGAACCTCCATGATAATTTCTTTGGAAACAATAATTTTATACGTGTAGACCAAATCA</canonical_amplicon>
		<polymorphic_amplicon>CAGGATAATAGTCGATTTTTGAAAGCCGCTGACGAGGGCTCCACCGGACACACTTTGACGGGTAAAGAGTTCCARCATCTGATTACTATATTAGAGAGAAATCGAGAAGATATTTTTGTTGAGTTTTTGATAAGTGATTTGAGATAGTATTTGTGACGTCGCAATGATCCAGCATGATTAAATATTTCGAAAATTGGAACCTCCATGATAATTTCTTTGGAAACAATAATTTTATACGTGTAGACCAAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35971</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>62811</contig_pos>
        <strand>+</strand>
        <context>TCTGATTACT[A/C]TATTAGAGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCTCCACCGGACACACTTTGACGGGTAAAGAGTTCCAACATCTGATTACT</left_flank>
        <right_flank>TATTAGAGAGAAATCGAGAAGATATTTTTGTTGAGTTTTTGATAAGTGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCCACCTGGCCGTCCAAATTTTTTTTTGTTTTTAGTAACCAACTGGCAATGTGCGCTGGATCCCAAAAATTGTCCCGATTCATTTTCTCTTCATGTAAATTAAATAAAGATTGATAACTTTCTTTTTTTTCAAATGTGTGAATGAAAAAGAAAATAAAGTTTCCCTATTCAAGTTCTGATTGGAGTTCAAAATGGAGCCAAATATAAGACACAAAGACAAAAGAACTGAGGCCGTATTTATTTATTTATTTATTTATTTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATAAAGGATAAACCGAGTTAGTAATTAGTTGAATTCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACGAGGGCTCCACCGGACACACTTTGACGGGTAAAGAGTTCCAACATCTGATTACTATATTAGAGAGAAATCGAGAAGATATTTTTGTTGAGTTTTTGATAAGTGATTTGAGATAGTATTTGTGACGTCGCAATGATCCAGCATGATTAAATATTTCGAAAATTGGAACCTCCATGATAATTTCTTTGGAAACAATAATTTTATACGTGTAGACCAAATCATTATAGAGCCTGCGATACTCCAAGGAACTTAGCTAACATTCTTCCAGTGCTTCAAAGTATGAAGTGTATGCCATCCTGAATTTTTTGAAAACTCTGAAAACAAATGACTTTTGCACCGATTCCAATTTTATAATATGATCCTTTAGGATTGGAGAAGTGACTATCGTTCCATATTCGAGTAAAGGGCGTATGTAAATTGTATAGCATTTTATAAAAACACTCCACGATGCGTTTTTTAGAATGGAAAAGAACATGTTGATCCTATTCATGAACGAACGTATTCATGAACATTTACCTAGGTAAGTGCATTTACCAAGGAAAATATTTACAAAAGGA</canonical>
            <polymorphic>CATCCACCTGGCCGTCCAAATTTTTTTTTGTTTTTAGTAACCAACTGGCAATGTGCGCTGGATCCCAAAAATTGTCCCGATTCATTTTCTCTTCATGTAAATTAAATAAAGATTGATAACTTTCTTTTTTTTCAAATGTGTGAATGAAAAAGAAAATAAAGTTTCCCTATTCAAGTTCTGATTGGAGTTCAAAATGGAGCCAAATATAAGACACAAAGACAAAAGAACTGAGGCCGTATTTATTTATTTATTTATTTATTTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATAAAGGATAAACCGAGTTAGTAATTAGTTGAATTCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACGAGGGCTCCACCGGACACACTTTGACGGGTAAAGAGTTCCAACATCTGATTACTMTATTAGAGAGAAATCGAGAAGATATTTTTGTTGAGTTTTTGATAAGTGATTTGAGATAGTATTTGTGACGTCGCAATGATCCAGCATGATTAAATATTTCGAAAATTGGAACCTCCATGATAATTTCTTTGGAAACAATAATTTTATACGTGTAGACCAAATCATTATAGAGCCTGCGATACTCCAAGGAACTTAGCTAACATTCTTCCAGTGCTTCAAAGTATGAAGTGTATGCCATCCTGAATTTTTTGAAAACTCTGAAAACAAATGACTTTTGCACCGATTCCAATTTTATAATATGATCCTTTAGGATTGGAGAAGTGACTATCGTTCCATATTCGAGTAAAGGGCGTATGTAAATTGTATAGCATTTTATAAAAACACTCCACGATGCGTTTTTTAGAATGGAAAAGAACATGTTGATCCTATTCATGAACGAACGTATTCATGAACATTTACCTAGGTAAGTGCATTTACCAAGGAAAATATTTACAAAAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGATAATAGTCGATTTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>TGATTTGGTCTACACGTATAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAGGATAATAGTCGATTTTTGAAAGCCGCTGACGAGGGCTCCACCGGACACACTTTGACGGGTAAAGAGTTCCAACATCTGATTACTATATTAGAGAGAAATCGAGAAGATATTTTTGTTGAGTTTTTGATAAGTGATTTGAGATAGTATTTGTGACGTCGCAATGATCCAGCATGATTAAATATTTCGAAAATTGGAACCTCCATGATAATTTCTTTGGAAACAATAATTTTATACGTGTAGACCAAATCA</canonical_amplicon>
		<polymorphic_amplicon>CAGGATAATAGTCGATTTTTGAAAGCCGCTGACGAGGGCTCCACCGGACACACTTTGACGGGTAAAGAGTTCCAACATCTGATTACTMTATTAGAGAGAAATCGAGAAGATATTTTTGTTGAGTTTTTGATAAGTGATTTGAGATAGTATTTGTGACGTCGCAATGATCCAGCATGATTAAATATTTCGAAAATTGGAACCTCCATGATAATTTCTTTGGAAACAATAATTTTATACGTGTAGACCAAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35972</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>64294</contig_pos>
        <strand>+</strand>
        <context>GTATAAAAGA[A/T]TTTACAGGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGAACTCTTTCAAGTTTCAGGAAGACTTCCACGGAAACTGTATAAAAGA</left_flank>
        <right_flank>TTTACAGGGAATGCAATAATTTAATAAAATTAAAAAATGTGGCTTCACAC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTGTTCCCAAAGAGAACGGATGCTATTAAGCAGAAAAAAAGTTAATTGTCAAATGAAGGTCTAGCTTTGCCAAAGATTTAGAGATCTATTTTTAACATAAGGTTAAGTAATAGCTTTTTTCAACTCTGCCATATTTTTGTAAATTACTGTGAAAAACAATATTTGAATTTAGATTACAAGGGTAAATATTTACTTCGAGTAAATCCATTTTTTGGTAAATCGATTTACAGGTGTAAATATTCACAAAAAATTATCATTGAAAAATCTAGAAGAAAAAGAAAATGTCAGTGACGTGAAAGAAAAGTCACTGTAAATCTGAAGGAAAATGCTTTCTTTTACAAATCTTTCATGAATACCAATCACTCTATTTTTCTCTTTGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATCTTCATGAATACGGCCTCTGAATTGTTTATAATGAACTCTTTCAAGTTTCAGGAAGACTTCCACGGAAACTGTATAAAAGAATTTACAGGGAATGCAATAATTTAATAAAATTAAAAAATGTGGCTTCACACTTTTCCGATGCAGCCAAACGACATCTTGGATTGCCTTCAATTGCTTCAAACTCGGATATTTTGGTAGTACTTGGATCAAACCTGGTAGTACGGCACTCTTCTAGAATCACGGAACGAAAAAAAAATCACGGAACGAAAAATATAATCACGGAACGAAAATTTTGGGTAATCCAAAAAATTGCTATCTTCTTCACTTTGACAAGTAGTATCCATAATACTGACTTTGGCATCAATTTTACTTTGTCCAATACCCAAAAGTATACTAAAATAGGGTTTATCAATTTCATAAGATACGCTAGGTAACAGGTTACATAGGACCTGTAGAACATCTGAAAATTCAGTTTAAAGCTACATCAAACAGTTATTGAGATTGCTGACATTTAAGGGTGTTCCAGATAAAAGAAGCATGGCGTTTCAGCCTAAGCCTGTGATTGAAGAAAGCTTCCTCAA</canonical>
            <polymorphic>TATTGTTCCCAAAGAGAACGGATGCTATTAAGCAGAAAAAAAGTTAATTGTCAAATGAAGGTCTAGCTTTGCCAAAGATTTAGAGATCTATTTTTAACATAAGGTTAAGTAATAGCTTTTTTCAACTCTGCCATATTTTTGTAAATTACTGTGAAAAACAATATTTGAATTTAGATTACAAGGGTAAATATTTACTTCGAGTAAATCCATTTTTTGGTAAATCGATTTACAGGTGTAAATATTCACAAAAAATTATCATTGAAAAATCTAGAAGAAAAAGAAAATGTCAGTGACGTGAAAGAAAAGTCACTGTAAATCTGAAGGAAAATGCTTTCTTTTACAAATCTTTCATGAATACCAATCACTCTATTTTTCTCTTTGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATCTTCATGAATACGGCCTCTGAATTGTTTATAATGAACTCTTTCAAGTTTCAGGAAGACTTCCACGGAAACTGTATAAAAGAWTTTACAGGGAATGCAATAATTTAATAAAATTAAAAAATGTGGCTTCACACTTTTCCGATGCAGCCAAACGACATCTTGGATTGCCTTCAATTGCTTCAAACTCGGATATTTTGGTAGTACTTGGATCAAACCTGGTAGTACGGCACTCTTCTAGAATCACGGAACGAAAAAAAAATCACGGAACGAAAAATATAATCACGGAACGAAAATTTTGGGTAATCCAAAAAATTGCTATCTTCTTCACTTTGACAAGTAGTATCCATAATACTGACTTTGGCATCAATTTTACTTTGTCCAATACCCAAAAGTATACTAAAATAGGGTTTATCAATTTCATAAGATACGCTAGGTAACAGGTTACATAGGACCTGTAGAACATCTGAAAATTCAGTTTAAAGCTACATCAAACAGTTATTGAGATTGCTGACATTTAAGGGTGTTCCAGATAAAAGAAGCATGGCGTTTCAGCCTAAGCCTGTGATTGAAGAAAGCTTCCTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>331 209 177 167 116</canonical_bands>
                <polymorphic_bands>540 177 167 116</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>188 119 116 98 83 61 60 55 55 48 45 24 19 19 10</canonical_bands>
                <polymorphic_bands>188 119 116 98 83 79 61 55 55 48 45 24 19 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAATCACTCTATTTTTCTCTTT</pcr_primer_p1>
		<pcr_primer_p2>CGAGTTTGAAGCAATTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACCAATCACTCTATTTTTCTCTTTGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATCTTCATGAATACGGCCTCTGAATTGTTTATAATGAACTCTTTCAAGTTTCAGGAAGACTTCCACGGAAACTGTATAAAAGAATTTACAGGGAATGCAATAATTTAATAAAATTAAAAAATGTGGCTTCACACTTTTCCGATGCAGCCAAACGACATCTTGGATTGCCTTCAATTGCTTCAAACTCG</canonical_amplicon>
		<polymorphic_amplicon>ACCAATCACTCTATTTTTCTCTTTGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATCTTCATGAATACGGCCTCTGAATTGTTTATAATGAACTCTTTCAAGTTTCAGGAAGACTTCCACGGAAACTGTATAAAAGAWTTTACAGGGAATGCAATAATTTAATAAAATTAAAAAATGTGGCTTCACACTTTTCCGATGCAGCCAAACGACATCTTGGATTGCCTTCAATTGCTTCAAACTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35973</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>64369</contig_pos>
        <strand>+</strand>
        <context>CAAACGACAT[C/T]TTGGATTKCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAATTAAAAAATGTGGCTTCACACTTTTCCGATGCAGCCAAACGACAT</left_flank>
        <right_flank>TTGGATTGCCTTCAATTGCTTCAAACTCGGATATTTTGGTAGTACTTGGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATTTAGAGATCTATTTTTAACATAAGGTTAAGTAATAGCTTTTTTCAACTCTGCCATATTTTTGTAAATTACTGTGAAAAACAATATTTGAATTTAGATTACAAGGGTAAATATTTACTTCGAGTAAATCCATTTTTTGGTAAATCGATTTACAGGTGTAAATATTCACAAAAAATTATCATTGAAAAATCTAGAAGAAAAAGAAAATGTCAGTGACGTGAAAGAAAAGTCACTGTAAATCTGAAGGAAAATGCTTTCTTTTACAAATCTTTCATGAATACCAATCACTCTATTTTTCTCTTTGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATCTTCATGAATACGGCCTCTGAATTGTTTATAATGAACTCTTTCAAGTTTCAGGAAGACTTCCACGGAAACTGTATAAAAGAATTTACAGGGAATGCAATAATTTAATAAAATTAAAAAATGTGGCTTCACACTTTTCCGATGCAGCCAAACGACATCTTGGATTGCCTTCAATTGCTTCAAACTCGGATATTTTGGTAGTACTTGGATCAAACCTGGTAGTACGGCACTCTTCTAGAATCACGGAACGAAAAAAAAATCACGGAACGAAAAATATAATCACGGAACGAAAATTTTGGGTAATCCAAAAAATTGCTATCTTCTTCACTTTGACAAGTAGTATCCATAATACTGACTTTGGCATCAATTTTACTTTGTCCAATACCCAAAAGTATACTAAAATAGGGTTTATCAATTTCATAAGATACGCTAGGTAACAGGTTACATAGGACCTGTAGAACATCTGAAAATTCAGTTTAAAGCTACATCAAACAGTTATTGAGATTGCTGACATTTAAGGGTGTTCCAGATAAAAGAAGCATGGCGTTTCAGCCTAAGCCTGTGATTGAAGAAAGCTTCCTCAATCCAAAAATATCATCCAATTTTTGAAAAATGAGAAATCCGAGACAAGAAGTTTCATGCCAAGATTTTTACTCAAT</canonical>
            <polymorphic>AGATTTAGAGATCTATTTTTAACATAAGGTTAAGTAATAGCTTTTTTCAACTCTGCCATATTTTTGTAAATTACTGTGAAAAACAATATTTGAATTTAGATTACAAGGGTAAATATTTACTTCGAGTAAATCCATTTTTTGGTAAATCGATTTACAGGTGTAAATATTCACAAAAAATTATCATTGAAAAATCTAGAAGAAAAAGAAAATGTCAGTGACGTGAAAGAAAAGTCACTGTAAATCTGAAGGAAAATGCTTTCTTTTACAAATCTTTCATGAATACCAATCACTCTATTTTTCTCTTTGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATCTTCATGAATACGGCCTCTGAATTGTTTATAATGAACTCTTTCAAGTTTCAGGAAGACTTCCACGGAAACTGTATAAAAGAATTTACAGGGAATGCAATAATTTAATAAAATTAAAAAATGTGGCTTCACACTTTTCCGATGCAGCCAAACGACATYTTGGATTGCCTTCAATTGCTTCAAACTCGGATATTTTGGTAGTACTTGGATCAAACCTGGTAGTACGGCACTCTTCTAGAATCACGGAACGAAAAAAAAATCACGGAACGAAAAATATAATCACGGAACGAAAATTTTGGGTAATCCAAAAAATTGCTATCTTCTTCACTTTGACAAGTAGTATCCATAATACTGACTTTGGCATCAATTTTACTTTGTCCAATACCCAAAAGTATACTAAAATAGGGTTTATCAATTTCATAAGATACGCTAGGTAACAGGTTACATAGGACCTGTAGAACATCTGAAAATTCAGTTTAAAGCTACATCAAACAGTTATTGAGATTGCTGACATTTAAGGGTGTTCCAGATAAAAGAAGCATGGCGTTTCAGCCTAAGCCTGTGATTGAAGAAAGCTTCCTCAATCCAAAAATATCATCCAATTTTTGAAAAATGAGAAATCCGAGACAAGAAGTTTCATGCCAAGATTTTTACTCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTCTATTTTTCTCTTTGTAAATCA</pcr_primer_p1>
		<pcr_primer_p2>TTTGATCCAAGTACTACCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>CACTCTATTTTTCTCTTTGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATCTTCATGAATACGGCCTCTGAATTGTTTATAATGAACTCTTTCAAGTTTCAGGAAGACTTCCACGGAAACTGTATAAAAGAATTTACAGGGAATGCAATAATTTAATAAAATTAAAAAATGTGGCTTCACACTTTTCCGATGCAGCCAAACGACATCTTGGATTGCCTTCAATTGCTTCAAACTCGGATATTTTGGTAGTACTTGGATCAAA</canonical_amplicon>
		<polymorphic_amplicon>CACTCTATTTTTCTCTTTGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATCTTCATGAATACGGCCTCTGAATTGTTTATAATGAACTCTTTCAAGTTTCAGGAAGACTTCCACGGAAACTGTATAAAAGAATTTACAGGGAATGCAATAATTTAATAAAATTAAAAAATGTGGCTTCACACTTTTCCGATGCAGCCAAACGACATYTTGGATTGCCTTCAATTGCTTCAAACTCGGATATTTTGGTAGTACTTGGATCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35974</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>64377</contig_pos>
        <strand>+</strand>
        <context>ATYTTGGATT[G/T]CCTTCAATTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAATGTGGCTTCACACTTTTCCGATGCAGCCAAACGACATCTTGGATT</left_flank>
        <right_flank>CCTTCAATTGCTTCAAACTCGGATATTTTGGTAGTACTTGGATCAAACCT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATCTATTTTTAACATAAGGTTAAGTAATAGCTTTTTTCAACTCTGCCATATTTTTGTAAATTACTGTGAAAAACAATATTTGAATTTAGATTACAAGGGTAAATATTTACTTCGAGTAAATCCATTTTTTGGTAAATCGATTTACAGGTGTAAATATTCACAAAAAATTATCATTGAAAAATCTAGAAGAAAAAGAAAATGTCAGTGACGTGAAAGAAAAGTCACTGTAAATCTGAAGGAAAATGCTTTCTTTTACAAATCTTTCATGAATACCAATCACTCTATTTTTCTCTTTGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATCTTCATGAATACGGCCTCTGAATTGTTTATAATGAACTCTTTCAAGTTTCAGGAAGACTTCCACGGAAACTGTATAAAAGAATTTACAGGGAATGCAATAATTTAATAAAATTAAAAAATGTGGCTTCACACTTTTCCGATGCAGCCAAACGACATCTTGGATTGCCTTCAATTGCTTCAAACTCGGATATTTTGGTAGTACTTGGATCAAACCTGGTAGTACGGCACTCTTCTAGAATCACGGAACGAAAAAAAAATCACGGAACGAAAAATATAATCACGGAACGAAAATTTTGGGTAATCCAAAAAATTGCTATCTTCTTCACTTTGACAAGTAGTATCCATAATACTGACTTTGGCATCAATTTTACTTTGTCCAATACCCAAAAGTATACTAAAATAGGGTTTATCAATTTCATAAGATACGCTAGGTAACAGGTTACATAGGACCTGTAGAACATCTGAAAATTCAGTTTAAAGCTACATCAAACAGTTATTGAGATTGCTGACATTTAAGGGTGTTCCAGATAAAAGAAGCATGGCGTTTCAGCCTAAGCCTGTGATTGAAGAAAGCTTCCTCAATCCAAAAATATCATCCAATTTTTGAAAAATGAGAAATCCGAGACAAGAAGTTTCATGCCAAGATTTTTACTCAATTTGGCCTA</canonical>
            <polymorphic>AGATCTATTTTTAACATAAGGTTAAGTAATAGCTTTTTTCAACTCTGCCATATTTTTGTAAATTACTGTGAAAAACAATATTTGAATTTAGATTACAAGGGTAAATATTTACTTCGAGTAAATCCATTTTTTGGTAAATCGATTTACAGGTGTAAATATTCACAAAAAATTATCATTGAAAAATCTAGAAGAAAAAGAAAATGTCAGTGACGTGAAAGAAAAGTCACTGTAAATCTGAAGGAAAATGCTTTCTTTTACAAATCTTTCATGAATACCAATCACTCTATTTTTCTCTTTGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATCTTCATGAATACGGCCTCTGAATTGTTTATAATGAACTCTTTCAAGTTTCAGGAAGACTTCCACGGAAACTGTATAAAAGAATTTACAGGGAATGCAATAATTTAATAAAATTAAAAAATGTGGCTTCACACTTTTCCGATGCAGCCAAACGACATCTTGGATTKCCTTCAATTGCTTCAAACTCGGATATTTTGGTAGTACTTGGATCAAACCTGGTAGTACGGCACTCTTCTAGAATCACGGAACGAAAAAAAAATCACGGAACGAAAAATATAATCACGGAACGAAAATTTTGGGTAATCCAAAAAATTGCTATCTTCTTCACTTTGACAAGTAGTATCCATAATACTGACTTTGGCATCAATTTTACTTTGTCCAATACCCAAAAGTATACTAAAATAGGGTTTATCAATTTCATAAGATACGCTAGGTAACAGGTTACATAGGACCTGTAGAACATCTGAAAATTCAGTTTAAAGCTACATCAAACAGTTATTGAGATTGCTGACATTTAAGGGTGTTCCAGATAAAAGAAGCATGGCGTTTCAGCCTAAGCCTGTGATTGAAGAAAGCTTCCTCAATCCAAAAATATCATCCAATTTTTGAAAAATGAGAAATCCGAGACAAGAAGTTTCATGCCAAGATTTTTACTCAATTTGGCCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTTTATAATGAACTCTTTCAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TACTACCAGGTTTGATCCAAGT</pcr_primer_p2>
		<pcr_amplicon_size>200</pcr_amplicon_size>
		<canonical_amplicon>TTGTTTATAATGAACTCTTTCAAGTTTCAGGAAGACTTCCACGGAAACTGTATAAAAGAATTTACAGGGAATGCAATAATTTAATAAAATTAAAAAATGTGGCTTCACACTTTTCCGATGCAGCCAAACGACATCTTGGATTGCCTTCAATTGCTTCAAACTCGGATATTTTGGTAGTACTTGGATCAAACCTGGTAGTA</canonical_amplicon>
		<polymorphic_amplicon>TTGTTTATAATGAACTCTTTCAAGTTTCAGGAAGACTTCCACGGAAACTGTATAAAAGAATTTACAGGGAATGCAATAATTTAATAAAATTAAAAAATGTGGCTTCACACTTTTCCGATGCAGCCAAACGACATCTTGGATTKCCTTCAATTGCTTCAAACTCGGATATTTTGGTAGTACTTGGATCAAACCTGGTAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35975</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>64499</contig_pos>
        <strand></strand>
        <context>atcacggaac[G/A]aaaattttgg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATCACGGAACGAAAAAAAAATCACGGAACGAAAAATATAATCACGGAAC</left_flank>
        <right_flank>AAAATTTTGGGTAATCCAAAAAATTGCTATCTTCTTCACTTTGACAAGTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCATTTTTTGGTAAATCGATTTACAGGTGTAAATATTCACAAAAAATTATCATTGAAAAATCTAGAAGAAAAAGAAAATGTCAGTGACGTGAAAGAAAAGTCACTGTAAATCTGAAGGAAAATGCTTTCTTTTACAAATCTTTCATGAATACCAATCACTCTATTTTTCTCTTTGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATCTTCATGAATACGGCCTCTGAATTGTTTATAATGAACTCTTTCAAGTTTCAGGAAGACTTCCACGGAAACTGTATAAAAGAATTTACAGGGAATGCAATAATTTAATAAAATTAAAAAATGTGGCTTCACACTTTTCCGATGCAGCCAAACGACATCTTGGATTGCCTTCAATTGCTTCAAACTCGGATATTTTGGTAGTACTTGGATCAAACCTGGTAGTACGGCACTCTTCTAGAATCACGGAACGAAAAAAAAATCACGGAACGAAAAATATAATCACGGAACGAAAATTTTGGGTAATCCAAAAAATTGCTATCTTCTTCACTTTGACAAGTAGTATCCATAATACTGACTTTGGCATCAATTTTACTTTGTCCAATACCCAAAAGTATACTAAAATAGGGTTTATCAATTTCATAAGATACGCTAGGTAACAGGTTACATAGGACCTGTAGAACATCTGAAAATTCAGTTTAAAGCTACATCAAACAGTTATTGAGATTGCTGACATTTAAGGGTGTTCCAGATAAAAGAAGCATGGCGTTTCAGCCTAAGCCTGTGATTGAAGAAAGCTTCCTCAATCCAAAAATATCATCCAATTTTTGAAAAATGAGAAATCCGAGACAAGAAGTTTCATGCCAAGATTTTTACTCAATTTGGCCTAAGGCTATTCTTATTCCGGACCAACATTTTGTTCCAAGAAGACTAATTTTGAATTAGAAAAGGTTTCTTCAATTATTGACTTAGGCTGAATCATCGTGTTTCCTTCATGTGGTACAACCAAAA</canonical>
            <polymorphic>TCCATTTTTTGGTAAATCGATTTACAGGTGTAAATATTCACAAAAAATTATCATTGAAAAATCTAGAAGAAAAAGAAAATGTCAGTGACGTGAAAGAAAAGTCACTGTAAATCTGAAGGAAAATGCTTTCTTTTACAAATCTTTCATGAATACCAATCACTCTATTTTTCTCTTTGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATCTTCATGAATACGGCCTCTGAATTGTTTATAATGAACTCTTTCAAGTTTCAGGAAGACTTCCACGGAAACTGTATAAAAGAATTTACAGGGAATGCAATAATTTAATAAAATTAAAAAATGTGGCTTCACACTTTTCCGATGCAGCCAAACGACATCTTGGATTGCCTTCAATTGCTTCAAACTCGGATATTTTGGTAGTACTTGGATCAAACCTGGTAGTACGGCACTCTTCTAGAATCACGGAACGAAAAAAAAATCACGGAACGAAAAATATAATCACGGAACRAAAATTTTGGGTAATCCAAAAAATTGCTATCTTCTTCACTTTGACAAGTAGTATCCATAATACTGACTTTGGCATCAATTTTACTTTGTCCAATACCCAAAAGTATACTAAAATAGGGTTTATCAATTTCATAAGATACGCTAGGTAACAGGTTACATAGGACCTGTAGAACATCTGAAAATTCAGTTTAAAGCTACATCAAACAGTTATTGAGATTGCTGACATTTAAGGGTGTTCCAGATAAAAGAAGCATGGCGTTTCAGCCTAAGCCTGTGATTGAAGAAAGCTTCCTCAATCCAAAAATATCATCCAATTTTTGAAAAATGAGAAATCCGAGACAAGAAGTTTCATGCCAAGATTTTTACTCAATTTGGCCTAAGGCTATTCTTATTCCGGACCAACATTTTGTTCCAAGAAGACTAATTTTGAATTAGAAAAGGTTTCTTCAATTATTGACTTAGGCTGAATCATCGTGTTTCCTTCATGTGGTACAACCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTTGGATCAAACCTGGTAGTA</pcr_primer_p1>
		<pcr_primer_p2>GAATCACGGAACAAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>920</pcr_amplicon_size>
		<canonical_amplicon>TACTTGGATCAAACCTGGTAGTACGGCACTCTTCTAGAATCACGGAACGAAAAAAAAATCACGGAACGAAAAATATAATCACGGAACGAAAATTTTGGGTAATCCAA</canonical_amplicon>
		<polymorphic_amplicon>TACTTGGATCAAACCTGGTAGTACGGCACTCTTCTAGAATCACGGAACGAAAAAAAAATCACGGAACGAAAAATATAATCACGGAACRAAAATTTTGGGTAATCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35976</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>64564</contig_pos>
        <strand></strand>
        <context>ccataatact[G/A]actttggcat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCCAAAAAATTGCTATCTTCTTCACTTTGACAAGTAGTATCCATAATACT</left_flank>
        <right_flank>ACTTTGGCATCAATTTTACTTTGTCCAATACCCAAAAGTATACTAAAATA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGAAAAAGAAAATGTCAGTGACGTGAAAGAAAAGTCACTGTAAATCTGAAGGAAAATGCTTTCTTTTACAAATCTTTCATGAATACCAATCACTCTATTTTTCTCTTTGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATCTTCATGAATACGGCCTCTGAATTGTTTATAATGAACTCTTTCAAGTTTCAGGAAGACTTCCACGGAAACTGTATAAAAGAATTTACAGGGAATGCAATAATTTAATAAAATTAAAAAATGTGGCTTCACACTTTTCCGATGCAGCCAAACGACATCTTGGATTGCCTTCAATTGCTTCAAACTCGGATATTTTGGTAGTACTTGGATCAAACCTGGTAGTACGGCACTCTTCTAGAATCACGGAACGAAAAAAAAATCACGGAACGAAAAATATAATCACGGAACGAAAATTTTGGGTAATCCAAAAAATTGCTATCTTCTTCACTTTGACAAGTAGTATCCATAATACTGACTTTGGCATCAATTTTACTTTGTCCAATACCCAAAAGTATACTAAAATAGGGTTTATCAATTTCATAAGATACGCTAGGTAACAGGTTACATAGGACCTGTAGAACATCTGAAAATTCAGTTTAAAGCTACATCAAACAGTTATTGAGATTGCTGACATTTAAGGGTGTTCCAGATAAAAGAAGCATGGCGTTTCAGCCTAAGCCTGTGATTGAAGAAAGCTTCCTCAATCCAAAAATATCATCCAATTTTTGAAAAATGAGAAATCCGAGACAAGAAGTTTCATGCCAAGATTTTTACTCAATTTGGCCTAAGGCTATTCTTATTCCGGACCAACATTTTGTTCCAAGAAGACTAATTTTGAATTAGAAAAGGTTTCTTCAATTATTGACTTAGGCTGAATCATCGTGTTTCCTTCATGTGGTACAACCAAAAAACGACGGCAAGTTTAATAACTCTGCTCGTTGCAGCCTCTAATCTAACTCCCATATGTCCCATGA</canonical>
            <polymorphic>GAAGAAAAAGAAAATGTCAGTGACGTGAAAGAAAAGTCACTGTAAATCTGAAGGAAAATGCTTTCTTTTACAAATCTTTCATGAATACCAATCACTCTATTTTTCTCTTTGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATCTTCATGAATACGGCCTCTGAATTGTTTATAATGAACTCTTTCAAGTTTCAGGAAGACTTCCACGGAAACTGTATAAAAGAATTTACAGGGAATGCAATAATTTAATAAAATTAAAAAATGTGGCTTCACACTTTTCCGATGCAGCCAAACGACATCTTGGATTGCCTTCAATTGCTTCAAACTCGGATATTTTGGTAGTACTTGGATCAAACCTGGTAGTACGGCACTCTTCTAGAATCACGGAACGAAAAAAAAATCACGGAACGAAAAATATAATCACGGAACGAAAATTTTGGGTAATCCAAAAAATTGCTATCTTCTTCACTTTGACAAGTAGTATCCATAATACTRACTTTGGCATCAATTTTACTTTGTCCAATACCCAAAAGTATACTAAAATAGGGTTTATCAATTTCATAAGATACGCTAGGTAACAGGTTACATAGGACCTGTAGAACATCTGAAAATTCAGTTTAAAGCTACATCAAACAGTTATTGAGATTGCTGACATTTAAGGGTGTTCCAGATAAAAGAAGCATGGCGTTTCAGCCTAAGCCTGTGATTGAAGAAAGCTTCCTCAATCCAAAAATATCATCCAATTTTTGAAAAATGAGAAATCCGAGACAAGAAGTTTCATGCCAAGATTTTTACTCAATTTGGCCTAAGGCTATTCTTATTCCGGACCAACATTTTGTTCCAAGAAGACTAATTTTGAATTAGAAAAGGTTTCTTCAATTATTGACTTAGGCTGAATCATCGTGTTTCCTTCATGTGGTACAACCAAAAAACGACGGCAAGTTTAATAACTCTGCTCGTTGCAGCCTCTAATCTAACTCCCATATGTCCCATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTTGGATCAAACCTGGTAGTA</pcr_primer_p1>
		<pcr_primer_p2>GAATCACGGAACAAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>920</pcr_amplicon_size>
		<canonical_amplicon>TACTTGGATCAAACCTGGTAGTACGGCACTCTTCTAGAATCACGGAACGAAAAAAAAATCACGGAACGAAAAATATAATCACGGAACGAAAATTTTGGGTAATCCAAAAAATTGCTATCTTCTTCACTTTGACAAGTAGTATCCATAATACTGACTTTGGCATCAATTTTAC</canonical_amplicon>
		<polymorphic_amplicon>TACTTGGATCAAACCTGGTAGTACGGCACTCTTCTAGAATCACGGAACGAAAAAAAAATCACGGAACGAAAAATATAATCACGGAACGAAAATTTTGGGTAATCCAAAAAATTGCTATCTTCTTCACTTTGACAAGTAGTATCCATAATACTRACTTTGGCATCAATTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35977</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>64613</contig_pos>
        <strand></strand>
        <context>tatactaaaa[T/A]agggtttatc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGACTTTGGCATCAATTTTACTTTGTCCAATACCCAAAAGTATACTAAAA</left_flank>
        <right_flank>AGGGTTTATCAATTTCATAAGATACGCTAGGTAACAGGTTACATAGGACC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGGAAAATGCTTTCTTTTACAAATCTTTCATGAATACCAATCACTCTATTTTTCTCTTTGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATCTTCATGAATACGGCCTCTGAATTGTTTATAATGAACTCTTTCAAGTTTCAGGAAGACTTCCACGGAAACTGTATAAAAGAATTTACAGGGAATGCAATAATTTAATAAAATTAAAAAATGTGGCTTCACACTTTTCCGATGCAGCCAAACGACATCTTGGATTGCCTTCAATTGCTTCAAACTCGGATATTTTGGTAGTACTTGGATCAAACCTGGTAGTACGGCACTCTTCTAGAATCACGGAACGAAAAAAAAATCACGGAACGAAAAATATAATCACGGAACGAAAATTTTGGGTAATCCAAAAAATTGCTATCTTCTTCACTTTGACAAGTAGTATCCATAATACTGACTTTGGCATCAATTTTACTTTGTCCAATACCCAAAAGTATACTAAAATAGGGTTTATCAATTTCATAAGATACGCTAGGTAACAGGTTACATAGGACCTGTAGAACATCTGAAAATTCAGTTTAAAGCTACATCAAACAGTTATTGAGATTGCTGACATTTAAGGGTGTTCCAGATAAAAGAAGCATGGCGTTTCAGCCTAAGCCTGTGATTGAAGAAAGCTTCCTCAATCCAAAAATATCATCCAATTTTTGAAAAATGAGAAATCCGAGACAAGAAGTTTCATGCCAAGATTTTTACTCAATTTGGCCTAAGGCTATTCTTATTCCGGACCAACATTTTGTTCCAAGAAGACTAATTTTGAATTAGAAAAGGTTTCTTCAATTATTGACTTAGGCTGAATCATCGTGTTTCCTTCATGTGGTACAACCAAAAAACGACGGCAAGTTTAATAACTCTGCTCGTTGCAGCCTCTAATCTAACTCCCATATGTCCCATGATCCCCAGAACATCTGGGAAAGGTTCATGTACACTATCAACTAGTGTACC</canonical>
            <polymorphic>GAAGGAAAATGCTTTCTTTTACAAATCTTTCATGAATACCAATCACTCTATTTTTCTCTTTGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATCTTCATGAATACGGCCTCTGAATTGTTTATAATGAACTCTTTCAAGTTTCAGGAAGACTTCCACGGAAACTGTATAAAAGAATTTACAGGGAATGCAATAATTTAATAAAATTAAAAAATGTGGCTTCACACTTTTCCGATGCAGCCAAACGACATCTTGGATTGCCTTCAATTGCTTCAAACTCGGATATTTTGGTAGTACTTGGATCAAACCTGGTAGTACGGCACTCTTCTAGAATCACGGAACGAAAAAAAAATCACGGAACGAAAAATATAATCACGGAACGAAAATTTTGGGTAATCCAAAAAATTGCTATCTTCTTCACTTTGACAAGTAGTATCCATAATACTGACTTTGGCATCAATTTTACTTTGTCCAATACCCAAAAGTATACTAAAAWAGGGTTTATCAATTTCATAAGATACGCTAGGTAACAGGTTACATAGGACCTGTAGAACATCTGAAAATTCAGTTTAAAGCTACATCAAACAGTTATTGAGATTGCTGACATTTAAGGGTGTTCCAGATAAAAGAAGCATGGCGTTTCAGCCTAAGCCTGTGATTGAAGAAAGCTTCCTCAATCCAAAAATATCATCCAATTTTTGAAAAATGAGAAATCCGAGACAAGAAGTTTCATGCCAAGATTTTTACTCAATTTGGCCTAAGGCTATTCTTATTCCGGACCAACATTTTGTTCCAAGAAGACTAATTTTGAATTAGAAAAGGTTTCTTCAATTATTGACTTAGGCTGAATCATCGTGTTTCCTTCATGTGGTACAACCAAAAAACGACGGCAAGTTTAATAACTCTGCTCGTTGCAGCCTCTAATCTAACTCCCATATGTCCCATGATCCCCAGAACATCTGGGAAAGGTTCATGTACACTATCAACTAGTGTACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTTGGATCAAACCTGGTAGTA</pcr_primer_p1>
		<pcr_primer_p2>GAATCACGGAACAAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>920</pcr_amplicon_size>
		<canonical_amplicon>TACTTGGATCAAACCTGGTAGTACGGCACTCTTCTAGAATCACGGAACGAAAAAAAAATCACGGAACGAAAAATATAATCACGGAACGAAAATTTTGGGTAATCCAAAAAATTGCTATCTTCTTCACTTTGACAAGTAGTATCCATAATACTGACTTTGGCATCAATTTTACTTTGTCCAATACCCAAAAGTATACTAAAATAGGGTTTATCAATTTCATA</canonical_amplicon>
		<polymorphic_amplicon>TACTTGGATCAAACCTGGTAGTACGGCACTCTTCTAGAATCACGGAACGAAAAAAAAATCACGGAACGAAAAATATAATCACGGAACGAAAATTTTGGGTAATCCAAAAAATTGCTATCTTCTTCACTTTGACAAGTAGTATCCATAATACTGACTTTGGCATCAATTTTACTTTGTCCAATACCCAAAAGTATACTAAAAWAGGGTTTATCAATTTCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35978</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>64644</contig_pos>
        <strand></strand>
        <context>gatacgctag[G/T]taacaggtta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACCCAAAAGTATACTAAAATAGGGTTTATCAATTTCATAAGATACGCTAG</left_flank>
        <right_flank>TAACAGGTTACATAGGACCTGTAGAACATCTGAAAATTCAGTTTAAAGCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAATACCAATCACTCTATTTTTCTCTTTGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATCTTCATGAATACGGCCTCTGAATTGTTTATAATGAACTCTTTCAAGTTTCAGGAAGACTTCCACGGAAACTGTATAAAAGAATTTACAGGGAATGCAATAATTTAATAAAATTAAAAAATGTGGCTTCACACTTTTCCGATGCAGCCAAACGACATCTTGGATTGCCTTCAATTGCTTCAAACTCGGATATTTTGGTAGTACTTGGATCAAACCTGGTAGTACGGCACTCTTCTAGAATCACGGAACGAAAAAAAAATCACGGAACGAAAAATATAATCACGGAACGAAAATTTTGGGTAATCCAAAAAATTGCTATCTTCTTCACTTTGACAAGTAGTATCCATAATACTGACTTTGGCATCAATTTTACTTTGTCCAATACCCAAAAGTATACTAAAATAGGGTTTATCAATTTCATAAGATACGCTAGGTAACAGGTTACATAGGACCTGTAGAACATCTGAAAATTCAGTTTAAAGCTACATCAAACAGTTATTGAGATTGCTGACATTTAAGGGTGTTCCAGATAAAAGAAGCATGGCGTTTCAGCCTAAGCCTGTGATTGAAGAAAGCTTCCTCAATCCAAAAATATCATCCAATTTTTGAAAAATGAGAAATCCGAGACAAGAAGTTTCATGCCAAGATTTTTACTCAATTTGGCCTAAGGCTATTCTTATTCCGGACCAACATTTTGTTCCAAGAAGACTAATTTTGAATTAGAAAAGGTTTCTTCAATTATTGACTTAGGCTGAATCATCGTGTTTCCTTCATGTGGTACAACCAAAAAACGACGGCAAGTTTAATAACTCTGCTCGTTGCAGCCTCTAATCTAACTCCCATATGTCCCATGATCCCCAGAACATCTGGGAAAGGTTCATGTACACTATCAACTAGTGTACCTTAAGGACTCAATACACCACATTTCGGGTGT</canonical>
            <polymorphic>ATGAATACCAATCACTCTATTTTTCTCTTTGTAAATCATTTACACGTTCTATTTACCTAAAAGTAAATCTTCATGAATACGGCCTCTGAATTGTTTATAATGAACTCTTTCAAGTTTCAGGAAGACTTCCACGGAAACTGTATAAAAGAATTTACAGGGAATGCAATAATTTAATAAAATTAAAAAATGTGGCTTCACACTTTTCCGATGCAGCCAAACGACATCTTGGATTGCCTTCAATTGCTTCAAACTCGGATATTTTGGTAGTACTTGGATCAAACCTGGTAGTACGGCACTCTTCTAGAATCACGGAACGAAAAAAAAATCACGGAACGAAAAATATAATCACGGAACGAAAATTTTGGGTAATCCAAAAAATTGCTATCTTCTTCACTTTGACAAGTAGTATCCATAATACTGACTTTGGCATCAATTTTACTTTGTCCAATACCCAAAAGTATACTAAAATAGGGTTTATCAATTTCATAAGATACGCTAGKTAACAGGTTACATAGGACCTGTAGAACATCTGAAAATTCAGTTTAAAGCTACATCAAACAGTTATTGAGATTGCTGACATTTAAGGGTGTTCCAGATAAAAGAAGCATGGCGTTTCAGCCTAAGCCTGTGATTGAAGAAAGCTTCCTCAATCCAAAAATATCATCCAATTTTTGAAAAATGAGAAATCCGAGACAAGAAGTTTCATGCCAAGATTTTTACTCAATTTGGCCTAAGGCTATTCTTATTCCGGACCAACATTTTGTTCCAAGAAGACTAATTTTGAATTAGAAAAGGTTTCTTCAATTATTGACTTAGGCTGAATCATCGTGTTTCCTTCATGTGGTACAACCAAAAAACGACGGCAAGTTTAATAACTCTGCTCGTTGCAGCCTCTAATCTAACTCCCATATGTCCCATGATCCCCAGAACATCTGGGAAAGGTTCATGTACACTATCAACTAGTGTACCTTAAGGACTCAATACACCACATTTCGGGTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>499 494 7</canonical_bands>
                <polymorphic_bands>506 494</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACTTGGATCAAACCTGGTAGTA</pcr_primer_p1>
		<pcr_primer_p2>GAATCACGGAACAAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>920</pcr_amplicon_size>
		<canonical_amplicon>TACTTGGATCAAACCTGGTAGTACGGCACTCTTCTAGAATCACGGAACGAAAAAAAAATCACGGAACGAAAAATATAATCACGGAACGAAAATTTTGGGTAATCCAAAAAATTGCTATCTTCTTCACTTTGACAAGTAGTATCCATAATACTGACTTTGGCATCAATTTTACTTTGTCCAATACCCAAAAGTATACTAAAATAGGGTTTATCAATTTCATAAGATACGCTAGGTAACAGGTTACATAGGACC</canonical_amplicon>
		<polymorphic_amplicon>TACTTGGATCAAACCTGGTAGTACGGCACTCTTCTAGAATCACGGAACGAAAAAAAAATCACGGAACGAAAAATATAATCACGGAACGAAAATTTTGGGTAATCCAAAAAATTGCTATCTTCTTCACTTTGACAAGTAGTATCCATAATACTGACTTTGGCATCAATTTTACTTTGTCCAATACCCAAAAGTATACTAAAATAGGGTTTATCAATTTCATAAGATACGCTAGKTAACAGGTTACATAGGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35979</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>64702</contig_pos>
        <strand></strand>
        <context>gctacatcaa[A/G]cagttattga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTACATAGGACCTGTAGAACATCTGAAAATTCAGTTTAAAGCTACATCAA</left_flank>
        <right_flank>CAGTTATTGAGATTGCTGACATTTAAGGGTGTTCCAGATAAAAGAAGCAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAGTAAATCTTCATGAATACGGCCTCTGAATTGTTTATAATGAACTCTTTCAAGTTTCAGGAAGACTTCCACGGAAACTGTATAAAAGAATTTACAGGGAATGCAATAATTTAATAAAATTAAAAAATGTGGCTTCACACTTTTCCGATGCAGCCAAACGACATCTTGGATTGCCTTCAATTGCTTCAAACTCGGATATTTTGGTAGTACTTGGATCAAACCTGGTAGTACGGCACTCTTCTAGAATCACGGAACGAAAAAAAAATCACGGAACGAAAAATATAATCACGGAACGAAAATTTTGGGTAATCCAAAAAATTGCTATCTTCTTCACTTTGACAAGTAGTATCCATAATACTGACTTTGGCATCAATTTTACTTTGTCCAATACCCAAAAGTATACTAAAATAGGGTTTATCAATTTCATAAGATACGCTAGGTAACAGGTTACATAGGACCTGTAGAACATCTGAAAATTCAGTTTAAAGCTACATCAAACAGTTATTGAGATTGCTGACATTTAAGGGTGTTCCAGATAAAAGAAGCATGGCGTTTCAGCCTAAGCCTGTGATTGAAGAAAGCTTCCTCAATCCAAAAATATCATCCAATTTTTGAAAAATGAGAAATCCGAGACAAGAAGTTTCATGCCAAGATTTTTACTCAATTTGGCCTAAGGCTATTCTTATTCCGGACCAACATTTTGTTCCAAGAAGACTAATTTTGAATTAGAAAAGGTTTCTTCAATTATTGACTTAGGCTGAATCATCGTGTTTCCTTCATGTGGTACAACCAAAAAACGACGGCAAGTTTAATAACTCTGCTCGTTGCAGCCTCTAATCTAACTCCCATATGTCCCATGATCCCCAGAACATCTGGGAAAGGTTCATGTACACTATCAACTAGTGTACCTTAAGGACTCAATACACCACATTTCGGGTGTCATTTTGGATACTGAGCAAAGAAAATGTAATGTCAAGGTAAGATCTCAGGATGGTACT</canonical>
            <polymorphic>AAAAGTAAATCTTCATGAATACGGCCTCTGAATTGTTTATAATGAACTCTTTCAAGTTTCAGGAAGACTTCCACGGAAACTGTATAAAAGAATTTACAGGGAATGCAATAATTTAATAAAATTAAAAAATGTGGCTTCACACTTTTCCGATGCAGCCAAACGACATCTTGGATTGCCTTCAATTGCTTCAAACTCGGATATTTTGGTAGTACTTGGATCAAACCTGGTAGTACGGCACTCTTCTAGAATCACGGAACGAAAAAAAAATCACGGAACGAAAAATATAATCACGGAACGAAAATTTTGGGTAATCCAAAAAATTGCTATCTTCTTCACTTTGACAAGTAGTATCCATAATACTGACTTTGGCATCAATTTTACTTTGTCCAATACCCAAAAGTATACTAAAATAGGGTTTATCAATTTCATAAGATACGCTAGGTAACAGGTTACATAGGACCTGTAGAACATCTGAAAATTCAGTTTAAAGCTACATCAARCAGTTATTGAGATTGCTGACATTTAAGGGTGTTCCAGATAAAAGAAGCATGGCGTTTCAGCCTAAGCCTGTGATTGAAGAAAGCTTCCTCAATCCAAAAATATCATCCAATTTTTGAAAAATGAGAAATCCGAGACAAGAAGTTTCATGCCAAGATTTTTACTCAATTTGGCCTAAGGCTATTCTTATTCCGGACCAACATTTTGTTCCAAGAAGACTAATTTTGAATTAGAAAAGGTTTCTTCAATTATTGACTTAGGCTGAATCATCGTGTTTCCTTCATGTGGTACAACCAAAAAACGACGGCAAGTTTAATAACTCTGCTCGTTGCAGCCTCTAATCTAACTCCCATATGTCCCATGATCCCCAGAACATCTGGGAAAGGTTCATGTACACTATCAACTAGTGTACCTTAAGGACTCAATACACCACATTTCGGGTGTCATTTTGGATACTGAGCAAAGAAAATGTAATGTCAAGGTAAGATCTCAGGATGGTACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>498 421 81</canonical_bands>
                <polymorphic_bands>919 81</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACTTGGATCAAACCTGGTAGTA</pcr_primer_p1>
		<pcr_primer_p2>GAATCACGGAACAAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>920</pcr_amplicon_size>
		<canonical_amplicon>TACTTGGATCAAACCTGGTAGTACGGCACTCTTCTAGAATCACGGAACGAAAAAAAAATCACGGAACGAAAAATATAATCACGGAACGAAAATTTTGGGTAATCCAAAAAATTGCTATCTTCTTCACTTTGACAAGTAGTATCCATAATACTGACTTTGGCATCAATTTTACTTTGTCCAATACCCAAAAGTATACTAAAATAGGGTTTATCAATTTCATAAGATACGCTAGGTAACAGGTTACATAGGACCTGTAGAACATCTGAAAATTCAGTTTAAAGCTACATCAAACAGTTATTGAGATTGCTGA</canonical_amplicon>
		<polymorphic_amplicon>TACTTGGATCAAACCTGGTAGTACGGCACTCTTCTAGAATCACGGAACGAAAAAAAAATCACGGAACGAAAAATATAATCACGGAACGAAAATTTTGGGTAATCCAAAAAATTGCTATCTTCTTCACTTTGACAAGTAGTATCCATAATACTGACTTTGGCATCAATTTTACTTTGTCCAATACCCAAAAGTATACTAAAATAGGGTTTATCAATTTCATAAGATACGCTAGGTAACAGGTTACATAGGACCTGTAGAACATCTGAAAATTCAGTTTAAAGCTACATCAARCAGTTATTGAGATTGCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35980</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>64714</contig_pos>
        <strand></strand>
        <context>agttattgag[A/C]ttgctgacat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGTAGAACATCTGAAAATTCAGTTTAAAGCTACATCAAACAGTTATTGAG</left_flank>
        <right_flank>TTGCTGACATTTAAGGGTGTTCCAGATAAAAGAAGCATGGCGTTTCAGCC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATGAATACGGCCTCTGAATTGTTTATAATGAACTCTTTCAAGTTTCAGGAAGACTTCCACGGAAACTGTATAAAAGAATTTACAGGGAATGCAATAATTTAATAAAATTAAAAAATGTGGCTTCACACTTTTCCGATGCAGCCAAACGACATCTTGGATTGCCTTCAATTGCTTCAAACTCGGATATTTTGGTAGTACTTGGATCAAACCTGGTAGTACGGCACTCTTCTAGAATCACGGAACGAAAAAAAAATCACGGAACGAAAAATATAATCACGGAACGAAAATTTTGGGTAATCCAAAAAATTGCTATCTTCTTCACTTTGACAAGTAGTATCCATAATACTGACTTTGGCATCAATTTTACTTTGTCCAATACCCAAAAGTATACTAAAATAGGGTTTATCAATTTCATAAGATACGCTAGGTAACAGGTTACATAGGACCTGTAGAACATCTGAAAATTCAGTTTAAAGCTACATCAAACAGTTATTGAGATTGCTGACATTTAAGGGTGTTCCAGATAAAAGAAGCATGGCGTTTCAGCCTAAGCCTGTGATTGAAGAAAGCTTCCTCAATCCAAAAATATCATCCAATTTTTGAAAAATGAGAAATCCGAGACAAGAAGTTTCATGCCAAGATTTTTACTCAATTTGGCCTAAGGCTATTCTTATTCCGGACCAACATTTTGTTCCAAGAAGACTAATTTTGAATTAGAAAAGGTTTCTTCAATTATTGACTTAGGCTGAATCATCGTGTTTCCTTCATGTGGTACAACCAAAAAACGACGGCAAGTTTAATAACTCTGCTCGTTGCAGCCTCTAATCTAACTCCCATATGTCCCATGATCCCCAGAACATCTGGGAAAGGTTCATGTACACTATCAACTAGTGTACCTTAAGGACTCAATACACCACATTTCGGGTGTCATTTTGGATACTGAGCAAAGAAAATGTAATGTCAAGGTAAGATCTCAGGATGGTACTTGAATGAAGGTT</canonical>
            <polymorphic>TCATGAATACGGCCTCTGAATTGTTTATAATGAACTCTTTCAAGTTTCAGGAAGACTTCCACGGAAACTGTATAAAAGAATTTACAGGGAATGCAATAATTTAATAAAATTAAAAAATGTGGCTTCACACTTTTCCGATGCAGCCAAACGACATCTTGGATTGCCTTCAATTGCTTCAAACTCGGATATTTTGGTAGTACTTGGATCAAACCTGGTAGTACGGCACTCTTCTAGAATCACGGAACGAAAAAAAAATCACGGAACGAAAAATATAATCACGGAACGAAAATTTTGGGTAATCCAAAAAATTGCTATCTTCTTCACTTTGACAAGTAGTATCCATAATACTGACTTTGGCATCAATTTTACTTTGTCCAATACCCAAAAGTATACTAAAATAGGGTTTATCAATTTCATAAGATACGCTAGGTAACAGGTTACATAGGACCTGTAGAACATCTGAAAATTCAGTTTAAAGCTACATCAAACAGTTATTGAGMTTGCTGACATTTAAGGGTGTTCCAGATAAAAGAAGCATGGCGTTTCAGCCTAAGCCTGTGATTGAAGAAAGCTTCCTCAATCCAAAAATATCATCCAATTTTTGAAAAATGAGAAATCCGAGACAAGAAGTTTCATGCCAAGATTTTTACTCAATTTGGCCTAAGGCTATTCTTATTCCGGACCAACATTTTGTTCCAAGAAGACTAATTTTGAATTAGAAAAGGTTTCTTCAATTATTGACTTAGGCTGAATCATCGTGTTTCCTTCATGTGGTACAACCAAAAAACGACGGCAAGTTTAATAACTCTGCTCGTTGCAGCCTCTAATCTAACTCCCATATGTCCCATGATCCCCAGAACATCTGGGAAAGGTTCATGTACACTATCAACTAGTGTACCTTAAGGACTCAATACACCACATTTCGGGTGTCATTTTGGATACTGAGCAAAGAAAATGTAATGTCAAGGTAAGATCTCAGGATGGTACTTGAATGAAGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTTGGATCAAACCTGGTAGTA</pcr_primer_p1>
		<pcr_primer_p2>GAATCACGGAACAAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>920</pcr_amplicon_size>
		<canonical_amplicon>TACTTGGATCAAACCTGGTAGTACGGCACTCTTCTAGAATCACGGAACGAAAAAAAAATCACGGAACGAAAAATATAATCACGGAACGAAAATTTTGGGTAATCCAAAAAATTGCTATCTTCTTCACTTTGACAAGTAGTATCCATAATACTGACTTTGGCATCAATTTTACTTTGTCCAATACCCAAAAGTATACTAAAATAGGGTTTATCAATTTCATAAGATACGCTAGGTAACAGGTTACATAGGACCTGTAGAACATCTGAAAATTCAGTTTAAAGCTACATCAAACAGTTATTGAGATTGCTGACATTTAAGGGTG</canonical_amplicon>
		<polymorphic_amplicon>TACTTGGATCAAACCTGGTAGTACGGCACTCTTCTAGAATCACGGAACGAAAAAAAAATCACGGAACGAAAAATATAATCACGGAACGAAAATTTTGGGTAATCCAAAAAATTGCTATCTTCTTCACTTTGACAAGTAGTATCCATAATACTGACTTTGGCATCAATTTTACTTTGTCCAATACCCAAAAGTATACTAAAATAGGGTTTATCAATTTCATAAGATACGCTAGGTAACAGGTTACATAGGACCTGTAGAACATCTGAAAATTCAGTTTAAAGCTACATCAAACAGTTATTGAGMTTGCTGACATTTAAGGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35981</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>70021</contig_pos>
        <strand>+</strand>
        <context>GAAACTTAAA[A/G]GAGGCCRGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAA</left_flank>
        <right_flank>GAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCAATGGGTTCTATTTTTCTCGAATTTCAAATTTTTTTCGAATGTTTTGTTTTTTTTAATTTTCATTTACTTCTTCTGTTTATAAAAGTTCACGATTAGTTGCTGCTTTTGCAGTTAAATTTTTCACTTACATGACTTCACCGTAATAAGCACCACTCAAAAAGTTGTTTTTGTTTTTGGTTGTATGTTTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGGCTATAAAACGAGGAGTGTGCCGCCGTTTAGAAGAACGTTCGCGTTCTCGCTTGTACGGCAACATGGAGTTATGGTAGGGGTGACCATACATATTTTCTGACTATACTGTGTTCATAAAAACTTCAAAAGTACGAAAATTGATCTCGTTGGGATTTTGAGCTTTCAACCAATAACAACTTTATATGACATACTAAATTCTGAAATAGATTCAAACAACTTTTTCATGTCCTCTTTCTCTTCAACGTT</canonical>
            <polymorphic>GTCAATGGGTTCTATTTTTCTCGAATTTCAAATTTTTTTCGAATGTTTTGTTTTTTTTAATTTTCATTTACTTCTTCTGTTTATAAAAGTTCACGATTAGTTGCTGCTTTTGCAGTTAAATTTTTCACTTACATGACTTCACCGTAATAAGCACCACTCAAAAAGTTGTTTTTGTTTTTGGTTGTATGTTTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAARGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGGCTATAAAACGAGGAGTGTGCCGCCGTTTAGAAGAACGTTCGCGTTCTCGCTTGTACGGCAACATGGAGTTATGGTAGGGGTGACCATACATATTTTCTGACTATACTGTGTTCATAAAAACTTCAAAAGTACGAAAATTGATCTCGTTGGGATTTTGAGCTTTCAACCAATAACAACTTTATATGACATACTAAATTCTGAAATAGATTCAAACAACTTTTTCATGTCCTCTTTCTCTTCAACGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATCTTATAAAATCGCAAGA</pcr_primer_p1>
		<pcr_primer_p2>AGTCTGGAATTATCGCCTAAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACT</canonical_amplicon>
		<polymorphic_amplicon>GAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAARGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35982</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>70028</contig_pos>
        <strand>+</strand>
        <context>AAARGAGGCC[A/G]GTCACGAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCC</left_flank>
        <right_flank>GTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTCTATTTTTCTCGAATTTCAAATTTTTTTCGAATGTTTTGTTTTTTTTAATTTTCATTTACTTCTTCTGTTTATAAAAGTTCACGATTAGTTGCTGCTTTTGCAGTTAAATTTTTCACTTACATGACTTCACCGTAATAAGCACCACTCAAAAAGTTGTTTTTGTTTTTGGTTGTATGTTTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGGCTATAAAACGAGGAGTGTGCCGCCGTTTAGAAGAACGTTCGCGTTCTCGCTTGTACGGCAACATGGAGTTATGGTAGGGGTGACCATACATATTTTCTGACTATACTGTGTTCATAAAAACTTCAAAAGTACGAAAATTGATCTCGTTGGGATTTTGAGCTTTCAACCAATAACAACTTTATATGACATACTAAATTCTGAAATAGATTCAAACAACTTTTTCATGTCCTCTTTCTCTTCAACGTTTTTGAAC</canonical>
            <polymorphic>GGTTCTATTTTTCTCGAATTTCAAATTTTTTTCGAATGTTTTGTTTTTTTTAATTTTCATTTACTTCTTCTGTTTATAAAAGTTCACGATTAGTTGCTGCTTTTGCAGTTAAATTTTTCACTTACATGACTTCACCGTAATAAGCACCACTCAAAAAGTTGTTTTTGTTTTTGGTTGTATGTTTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCRGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGGCTATAAAACGAGGAGTGTGCCGCCGTTTAGAAGAACGTTCGCGTTCTCGCTTGTACGGCAACATGGAGTTATGGTAGGGGTGACCATACATATTTTCTGACTATACTGTGTTCATAAAAACTTCAAAAGTACGAAAATTGATCTCGTTGGGATTTTGAGCTTTCAACCAATAACAACTTTATATGACATACTAAATTCTGAAATAGATTCAAACAACTTTTTCATGTCCTCTTTCTCTTCAACGTTTTTGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATCTTATAAAATCGCAAGA</pcr_primer_p1>
		<pcr_primer_p2>AGTCTGGAATTATCGCCTAAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACT</canonical_amplicon>
		<polymorphic_amplicon>GAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCRGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35983</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>70056</contig_pos>
        <strand>+</strand>
        <context>GGTTTTCTTG[G/T]GGCGAGATCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTG</left_flank>
        <right_flank>GGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCGAATGTTTTGTTTTTTTTAATTTTCATTTACTTCTTCTGTTTATAAAAGTTCACGATTAGTTGCTGCTTTTGCAGTTAAATTTTTCACTTACATGACTTCACCGTAATAAGCACCACTCAAAAAGTTGTTTTTGTTTTTGGTTGTATGTTTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGGCTATAAAACGAGGAGTGTGCCGCCGTTTAGAAGAACGTTCGCGTTCTCGCTTGTACGGCAACATGGAGTTATGGTAGGGGTGACCATACATATTTTCTGACTATACTGTGTTCATAAAAACTTCAAAAGTACGAAAATTGATCTCGTTGGGATTTTGAGCTTTCAACCAATAACAACTTTATATGACATACTAAATTCTGAAATAGATTCAAACAACTTTTTCATGTCCTCTTTCTCTTCAACGTTTTTGAACTGTTGACCGGAAACTGTGTAGTTCTATG</canonical>
            <polymorphic>TTTTCGAATGTTTTGTTTTTTTTAATTTTCATTTACTTCTTCTGTTTATAAAAGTTCACGATTAGTTGCTGCTTTTGCAGTTAAATTTTTCACTTACATGACTTCACCGTAATAAGCACCACTCAAAAAGTTGTTTTTGTTTTTGGTTGTATGTTTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGKGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGGCTATAAAACGAGGAGTGTGCCGCCGTTTAGAAGAACGTTCGCGTTCTCGCTTGTACGGCAACATGGAGTTATGGTAGGGGTGACCATACATATTTTCTGACTATACTGTGTTCATAAAAACTTCAAAAGTACGAAAATTGATCTCGTTGGGATTTTGAGCTTTCAACCAATAACAACTTTATATGACATACTAAATTCTGAAATAGATTCAAACAACTTTTTCATGTCCTCTTTCTCTTCAACGTTTTTGAACTGTTGACCGGAAACTGTGTAGTTCTATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>161 145 94 63 62 58 53 47 34 32 31 28 28 27 25 21 19 14 13 12 10 8 8 3 2 2</canonical_bands>
                <polymorphic_bands>161 145 94 63 62 58 56 53 47 34 32 28 28 27 21 19 14 13 12 10 8 8 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATCTTATAAAATCGCAAGA</pcr_primer_p1>
		<pcr_primer_p2>AGTCTGGAATTATCGCCTAAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACT</canonical_amplicon>
		<polymorphic_amplicon>GAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGKGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35984</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>70126</contig_pos>
        <strand>+</strand>
        <context>CGAGCATTTA[G/T]TTTTTTTAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTA</left_flank>
        <right_flank>TTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTTTGCAGTTAAATTTTTCACTTACATGACTTCACCGTAATAAGCACCACTCAAAAAGTTGTTTTTGTTTTTGGTTGTATGTTTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGGCTATAAAACGAGGAGTGTGCCGCCGTTTAGAAGAACGTTCGCGTTCTCGCTTGTACGGCAACATGGAGTTATGGTAGGGGTGACCATACATATTTTCTGACTATACTGTGTTCATAAAAACTTCAAAAGTACGAAAATTGATCTCGTTGGGATTTTGAGCTTTCAACCAATAACAACTTTATATGACATACTAAATTCTGAAATAGATTCAAACAACTTTTTCATGTCCTCTTTCTCTTCAACGTTTTTGAACTGTTGACCGGAAACTGTGTAGTTCTATGAAGCGAAATACTGATATGGAGTTGTTAATTTGTAGACTCCATTAAGTTTCTGTTTTTTTTTTCAGATCCA</canonical>
            <polymorphic>GCTTTTGCAGTTAAATTTTTCACTTACATGACTTCACCGTAATAAGCACCACTCAAAAAGTTGTTTTTGTTTTTGGTTGTATGTTTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTAKTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGGCTATAAAACGAGGAGTGTGCCGCCGTTTAGAAGAACGTTCGCGTTCTCGCTTGTACGGCAACATGGAGTTATGGTAGGGGTGACCATACATATTTTCTGACTATACTGTGTTCATAAAAACTTCAAAAGTACGAAAATTGATCTCGTTGGGATTTTGAGCTTTCAACCAATAACAACTTTATATGACATACTAAATTCTGAAATAGATTCAAACAACTTTTTCATGTCCTCTTTCTCTTCAACGTTTTTGAACTGTTGACCGGAAACTGTGTAGTTCTATGAAGCGAAATACTGATATGGAGTTGTTAATTTGTAGACTCCATTAAGTTTCTGTTTTTTTTTTCAGATCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATCTTATAAAATCGCAAGA</pcr_primer_p1>
		<pcr_primer_p2>AAGTCTGGAATTATCGCCTAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTT</canonical_amplicon>
		<polymorphic_amplicon>GAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTAKTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35985</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>70145</contig_pos>
        <strand></strand>
        <context>GTACACACAA[G/A]ATTTCKTAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAA</left_flank>
        <right_flank>ATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACTTACATGACTTCACCGTAATAAGCACCACTCAAAAAGTTGTTTTTGTTTTTGGTTGTATGTTTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGGCTATAAAACGAGGAGTGTGCCGCCGTTTAGAAGAACGTTCGCGTTCTCGCTTGTACGGCAACATGGAGTTATGGTAGGGGTGACCATACATATTTTCTGACTATACTGTGTTCATAAAAACTTCAAAAGTACGAAAATTGATCTCGTTGGGATTTTGAGCTTTCAACCAATAACAACTTTATATGACATACTAAATTCTGAAATAGATTCAAACAACTTTTTCATGTCCTCTTTCTCTTCAACGTTTTTGAACTGTTGACCGGAAACTGTGTAGTTCTATGAAGCGAAATACTGATATGGAGTTGTTAATTTGTAGACTCCATTAAGTTTCTGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTT</canonical>
            <polymorphic>TCACTTACATGACTTCACCGTAATAAGCACCACTCAAAAAGTTGTTTTTGTTTTTGGTTGTATGTTTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAARATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGGCTATAAAACGAGGAGTGTGCCGCCGTTTAGAAGAACGTTCGCGTTCTCGCTTGTACGGCAACATGGAGTTATGGTAGGGGTGACCATACATATTTTCTGACTATACTGTGTTCATAAAAACTTCAAAAGTACGAAAATTGATCTCGTTGGGATTTTGAGCTTTCAACCAATAACAACTTTATATGACATACTAAATTCTGAAATAGATTCAAACAACTTTTTCATGTCCTCTTTCTCTTCAACGTTTTTGAACTGTTGACCGGAAACTGTGTAGTTCTATGAAGCGAAATACTGATATGGAGTTGTTAATTTGTAGACTCCATTAAGTTTCTGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTGAAAACGTGAAACTTAAA</pcr_primer_p1>
		<pcr_primer_p2>CGTTTGGTGTAGAGGTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACG</canonical_amplicon>
		<polymorphic_amplicon>CCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAARATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35986</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>70151</contig_pos>
        <strand></strand>
        <context>ACAARATTTC[G/T]TAAATGTTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTC</left_flank>
        <right_flank>TAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATGACTTCACCGTAATAAGCACCACTCAAAAAGTTGTTTTTGTTTTTGGTTGTATGTTTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGGCTATAAAACGAGGAGTGTGCCGCCGTTTAGAAGAACGTTCGCGTTCTCGCTTGTACGGCAACATGGAGTTATGGTAGGGGTGACCATACATATTTTCTGACTATACTGTGTTCATAAAAACTTCAAAAGTACGAAAATTGATCTCGTTGGGATTTTGAGCTTTCAACCAATAACAACTTTATATGACATACTAAATTCTGAAATAGATTCAAACAACTTTTTCATGTCCTCTTTCTCTTCAACGTTTTTGAACTGTTGACCGGAAACTGTGTAGTTCTATGAAGCGAAATACTGATATGGAGTTGTTAATTTGTAGACTCCATTAAGTTTCTGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCA</canonical>
            <polymorphic>ACATGACTTCACCGTAATAAGCACCACTCAAAAAGTTGTTTTTGTTTTTGGTTGTATGTTTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCKTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGGCTATAAAACGAGGAGTGTGCCGCCGTTTAGAAGAACGTTCGCGTTCTCGCTTGTACGGCAACATGGAGTTATGGTAGGGGTGACCATACATATTTTCTGACTATACTGTGTTCATAAAAACTTCAAAAGTACGAAAATTGATCTCGTTGGGATTTTGAGCTTTCAACCAATAACAACTTTATATGACATACTAAATTCTGAAATAGATTCAAACAACTTTTTCATGTCCTCTTTCTCTTCAACGTTTTTGAACTGTTGACCGGAAACTGTGTAGTTCTATGAAGCGAAATACTGATATGGAGTTGTTAATTTGTAGACTCCATTAAGTTTCTGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTGAAAACGTGAAACTTAAA</pcr_primer_p1>
		<pcr_primer_p2>CGTTTGGTGTAGAGGTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACG</canonical_amplicon>
		<polymorphic_amplicon>CCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCKTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35987</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>70182</contig_pos>
        <strand>+</strand>
        <context>CAGACTTTTT[A/G]TCGATATTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTT</left_flank>
        <right_flank>TCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCAC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGTTGTTTTTGTTTTTGGTTGTATGTTTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGGCTATAAAACGAGGAGTGTGCCGCCGTTTAGAAGAACGTTCGCGTTCTCGCTTGTACGGCAACATGGAGTTATGGTAGGGGTGACCATACATATTTTCTGACTATACTGTGTTCATAAAAACTTCAAAAGTACGAAAATTGATCTCGTTGGGATTTTGAGCTTTCAACCAATAACAACTTTATATGACATACTAAATTCTGAAATAGATTCAAACAACTTTTTCATGTCCTCTTTCTCTTCAACGTTTTTGAACTGTTGACCGGAAACTGTGTAGTTCTATGAAGCGAAATACTGATATGGAGTTGTTAATTTGTAGACTCCATTAAGTTTCTGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTAT</canonical>
            <polymorphic>AAAGTTGTTTTTGTTTTTGGTTGTATGTTTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTRTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGGCTATAAAACGAGGAGTGTGCCGCCGTTTAGAAGAACGTTCGCGTTCTCGCTTGTACGGCAACATGGAGTTATGGTAGGGGTGACCATACATATTTTCTGACTATACTGTGTTCATAAAAACTTCAAAAGTACGAAAATTGATCTCGTTGGGATTTTGAGCTTTCAACCAATAACAACTTTATATGACATACTAAATTCTGAAATAGATTCAAACAACTTTTTCATGTCCTCTTTCTCTTCAACGTTTTTGAACTGTTGACCGGAAACTGTGTAGTTCTATGAAGCGAAATACTGATATGGAGTTGTTAATTTGTAGACTCCATTAAGTTTCTGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNNNGTC</site>
                <isoschizomers>
                    <enzyme>AhdI</enzyme>
                    <enzyme>AspEI</enzyme>
                    <enzyme>Eam1105I</enzyme>
                    <enzyme>EclHKI</enzyme>
                    <enzyme>NruGI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTGAAAACGTGAAACTTAAA</pcr_primer_p1>
		<pcr_primer_p2>CGTTTGGTGTAGAGGTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACG</canonical_amplicon>
		<polymorphic_amplicon>CCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTRTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35988</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>70193</contig_pos>
        <strand>+</strand>
        <context>TCGATATTCT[G/T]TCAGCGCGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCT</left_flank>
        <right_flank>TCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTTTGGTTGTATGTTTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGGCTATAAAACGAGGAGTGTGCCGCCGTTTAGAAGAACGTTCGCGTTCTCGCTTGTACGGCAACATGGAGTTATGGTAGGGGTGACCATACATATTTTCTGACTATACTGTGTTCATAAAAACTTCAAAAGTACGAAAATTGATCTCGTTGGGATTTTGAGCTTTCAACCAATAACAACTTTATATGACATACTAAATTCTGAAATAGATTCAAACAACTTTTTCATGTCCTCTTTCTCTTCAACGTTTTTGAACTGTTGACCGGAAACTGTGTAGTTCTATGAAGCGAAATACTGATATGGAGTTGTTAATTTGTAGACTCCATTAAGTTTCTGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTT</canonical>
            <polymorphic>TGTTTTTGGTTGTATGTTTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTKTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGGCTATAAAACGAGGAGTGTGCCGCCGTTTAGAAGAACGTTCGCGTTCTCGCTTGTACGGCAACATGGAGTTATGGTAGGGGTGACCATACATATTTTCTGACTATACTGTGTTCATAAAAACTTCAAAAGTACGAAAATTGATCTCGTTGGGATTTTGAGCTTTCAACCAATAACAACTTTATATGACATACTAAATTCTGAAATAGATTCAAACAACTTTTTCATGTCCTCTTTCTCTTCAACGTTTTTGAACTGTTGACCGGAAACTGTGTAGTTCTATGAAGCGAAATACTGATATGGAGTTGTTAATTTGTAGACTCCATTAAGTTTCTGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTGAAAACGTGAAACTTAAA</pcr_primer_p1>
		<pcr_primer_p2>CGTTTGGTGTAGAGGTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACG</canonical_amplicon>
		<polymorphic_amplicon>CCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTKTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35989</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>70209</contig_pos>
        <strand>+</strand>
        <context>GCGTGAAAAC[A/G]GAAAAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAAC</left_flank>
        <right_flank>GAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGGCTATAAAACGAGGAGTGTGCCGCCGTTTAGAAGAACGTTCGCGTTCTCGCTTGTACGGCAACATGGAGTTATGGTAGGGGTGACCATACATATTTTCTGACTATACTGTGTTCATAAAAACTTCAAAAGTACGAAAATTGATCTCGTTGGGATTTTGAGCTTTCAACCAATAACAACTTTATATGACATACTAAATTCTGAAATAGATTCAAACAACTTTTTCATGTCCTCTTTCTCTTCAACGTTTTTGAACTGTTGACCGGAAACTGTGTAGTTCTATGAAGCGAAATACTGATATGGAGTTGTTAATTTGTAGACTCCATTAAGTTTCTGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATT</canonical>
            <polymorphic>TTTTCCAAGCTGTTTTCTTATGTACAGATTTAGTTGTAGAGACTTCATCCTGAACGTCTTCACCAAAATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACRGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGGCTATAAAACGAGGAGTGTGCCGCCGTTTAGAAGAACGTTCGCGTTCTCGCTTGTACGGCAACATGGAGTTATGGTAGGGGTGACCATACATATTTTCTGACTATACTGTGTTCATAAAAACTTCAAAAGTACGAAAATTGATCTCGTTGGGATTTTGAGCTTTCAACCAATAACAACTTTATATGACATACTAAATTCTGAAATAGATTCAAACAACTTTTTCATGTCCTCTTTCTCTTCAACGTTTTTGAACTGTTGACCGGAAACTGTGTAGTTCTATGAAGCGAAATACTGATATGGAGTTGTTAATTTGTAGACTCCATTAAGTTTCTGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTAGGCGATAATTCCAGACT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGAAGTTTTTATGAACACAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGGCTATAAAACGAGGAGTGTGCCGCCGTTTAGAAGAACGTTCGCGTTCTCGCTTGTACGGCAACATGGAGTTATGGTAGGGGTGACCATACATATTTTCTGACTATACTGTGTTCATAAAAACTTCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACRGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGGCTATAAAACGAGGAGTGTGCCGCCGTTTAGAAGAACGTTCGCGTTCTCGCTTGTACGGCAACATGGAGTTATGGTAGGGGTGACCATACATATTTTCTGACTATACTGTGTTCATAAAAACTTCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35990</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>70276</contig_pos>
        <strand>+</strand>
        <context>GCTAAAACGG[C/T]TATAAAACGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGG</left_flank>
        <right_flank>TATAAAACGAGGAGTGTGCCGCCGTTTAGAAGAACGTTCGCGTTCTCGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGGCTATAAAACGAGGAGTGTGCCGCCGTTTAGAAGAACGTTCGCGTTCTCGCTTGTACGGCAACATGGAGTTATGGTAGGGGTGACCATACATATTTTCTGACTATACTGTGTTCATAAAAACTTCAAAAGTACGAAAATTGATCTCGTTGGGATTTTGAGCTTTCAACCAATAACAACTTTATATGACATACTAAATTCTGAAATAGATTCAAACAACTTTTTCATGTCCTCTTTCTCTTCAACGTTTTTGAACTGTTGACCGGAAACTGTGTAGTTCTATGAAGCGAAATACTGATATGGAGTTGTTAATTTGTAGACTCCATTAAGTTTCTGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAAT</canonical>
            <polymorphic>ATAGTTCTTGTTCATGGTCGCACTTCTTCACTTATCATGCAACGATGCGAAGCAAAATTTATTTTTATGTATATTCACGTAGTAAAATTCAATGAAGTATCCGAATATAAAAAACTAAGACAAAACATTCGAATGTTTATATTGATTCTAGTTTCAGGAAAATCTTATAAAATCGCAAGAAAACATTTCAGAAAAATGGCGGATTCAAGAAGTTTCAAGTCACCCTGAAAACGTGAAACTTAAAAGAGGCCGGTCACGAAATTCTACGGGGTTTTCTTGTGGCGAGATCATGCATTCTGATGGAAAGTCGTGCGATTGCGGCAAATGCGCACTACTTGACGAGCATTTATTTTTTTTAGTACACACAAGATTTCGTAAATGTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGGYTATAAAACGAGGAGTGTGCCGCCGTTTAGAAGAACGTTCGCGTTCTCGCTTGTACGGCAACATGGAGTTATGGTAGGGGTGACCATACATATTTTCTGACTATACTGTGTTCATAAAAACTTCAAAAGTACGAAAATTGATCTCGTTGGGATTTTGAGCTTTCAACCAATAACAACTTTATATGACATACTAAATTCTGAAATAGATTCAAACAACTTTTTCATGTCCTCTTTCTCTTCAACGTTTTTGAACTGTTGACCGGAAACTGTGTAGTTCTATGAAGCGAAATACTGATATGGAGTTGTTAATTTGTAGACTCCATTAAGTTTCTGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>446 318 178 58</canonical_bands>
                <polymorphic_bands>446 318 236</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>307 250 249 159 35</canonical_bands>
                <polymorphic_bands>409 307 249 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTAGGCGATAATTCCAGACT</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGAAGTTTTTATGAACACAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGGCTATAAAACGAGGAGTGTGCCGCCGTTTAGAAGAACGTTCGCGTTCTCGCTTGTACGGCAACATGGAGTTATGGTAGGGGTGACCATACATATTTTCTGACTATACTGTGTTCATAAAAACTTCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>GTTAGGCGATAATTCCAGACTTTTTGTCGATATTCTGTCAGCGCGTGAAAACAGAAAAAAAAACAAGCGCGTTCACCTCTACACCAAACGGCGCCTGCCGTCTACTGCCGCTAAAACGGYTATAAAACGAGGAGTGTGCCGCCGTTTAGAAGAACGTTCGCGTTCTCGCTTGTACGGCAACATGGAGTTATGGTAGGGGTGACCATACATATTTTCTGACTATACTGTGTTCATAAAAACTTCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35991</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>71076</contig_pos>
        <strand>+</strand>
        <context>AAGTAAAAGR[A/G]GATACTGGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGA</left_flank>
        <right_flank>GATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGTTAATTTGTAGACTCCATTAAGTTTCTGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCT</canonical>
            <polymorphic>GTTGTTAATTTGTAGACTCCATTAAGTTTCTGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGARGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTATCCCTCGTTGTACTG</pcr_primer_p1>
		<pcr_primer_p2>ACCGAGCATCCTAATAACTTAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGT</canonical_amplicon>
		<polymorphic_amplicon>GGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGARGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35992</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>71106</contig_pos>
        <strand>+</strand>
        <context>AGACGCAGGR[A/G]AGWWTATCGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGA</left_flank>
        <right_flank>AGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCTTTTCCATTTGTAATCAATTGATAACTTTTG</canonical>
            <polymorphic>TGTTTTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGARAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCTTTTCCATTTGTAATCAATTGATAACTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTATCCCTCGTTGTACTG</pcr_primer_p1>
		<pcr_primer_p2>ACCGAGCATCCTAATAACTTAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGT</canonical_amplicon>
		<polymorphic_amplicon>GGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGARAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35993</snp_id>
        <super_contig>c010200901.Contig1</super_contig>
        <contig_pos>71110</contig_pos>
        <strand>+</strand>
        <context>GCAGGRRAGW[A/T]TATCGTYGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGA</left_flank>
        <right_flank>TATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCTTTTCCATTTGTAATCAATTGATAACTTTTGAAAG</canonical>
            <polymorphic>TTTTTTTTCAGATCCATTGGAGATTTTAACGTTTTTGGTCAAATTCTGAGAGGATTTTTCAACCTGTTGTATATATCATTTTTCTCAGTTTATTTGATTCCTGCTTTTTATTTCCCATCCACTCTCATAAGCTTCTCTCAACAATTTTCGATTTTTCGAAAACAATAATTTGTTATTCACTGCTCTGTTTATAAGGTGACAATAGAAACCAAGGTATATACAGAGTATATTCGTAGTCTGATCCAAGCTCGTGAATATGGGCATGTGGCTGCACCCCCTGGCACGGGAAAGGAGCCAAAAGAGCCAGAGCAACTGAGAACAGAGGAAGAGAAAAGGATTATAAGCGAGATATAAAAGTAACTAAGGAGGCGCACAGACGGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGAWTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGTGACAGTGAAGTGATAATTTATTCCAGATCATCTATATCTCAATCATATCTAGTTATCCACGTCATGTTATTCAATATCAAGTTCATTAGGTCTTTATAAAGGTAAAGAATCGATAAGGACATTTGTTGAATTTAGTATAATTTTTCCAGAATCGCACAATAACCACTTCATTCAACCGTATATTCATCACAATCAACGGGTCTACTCAGGCAATTTCGACAGCCGTCTGGCTTGGCAGTCTTCTTTGTCAATGGGTTTTATTTTCCTCAAATTAAACATTTTTTCTATTGTATCTTTTCATCATTCTTATTGTGCTATCATGTGTTTCAATGGTTAGCTTTTCCATTTGTAATCAATTGATAACTTTTGAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTATCCCTCGTTGTACTG</pcr_primer_p1>
		<pcr_primer_p2>ACCGAGCATCCTAATAACTTAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGATTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGT</canonical_amplicon>
		<polymorphic_amplicon>GGATTATCCCTCGTTGTACTGCACCCTTGGCACAGGAAACAGACCAGAAGAGCCGAAGCACCTCCACGCAGAGAAAAAAGTAAAAGAAGATACTGGAGTAACTAAGAAGACGCAGGAAAGAWTATCGTTGTTGCCAGACCCGCCTCAGCTTTAGTCATTCGCTCTTCATGTCCTCCTAGCTATCACACGTTTAGTAGGTGTTCTCTTCGGGTCGACTCAATGTATACGTAAGTTATTAGGATGCTCGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35994</snp_id>
        <super_contig>c010300616.Contig1</super_contig>
        <contig_pos>24373</contig_pos>
        <strand>+</strand>
        <context>TTTTTCAAAT[C/T]CTACGCTACG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCACTCCAAACCAAACGTGGTTTTTGAAATCGCCCCAAGTTTTTCAAAT</left_flank>
        <right_flank>CTACGCTACGTGAAAACTGAGGAACTGGGCGTACGTCAACCAAATTGTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGGAGCAGTCATATCATCCTATAAGGCCCAAAACTGAAACTACTCACACATTTCAAATACTAGTACATTATTCCAATATCTGTGCGTTTTCAAATTTTGGACCTCTAAACTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTATTTTGGGGCCTCTAATTTTTTTTCGGACCTGTAAATTGTTTTGGGACCTCTAAACTAGAAAAGAGCCAAAAAATCCAGGTAAAAAAATTAGGAATTTCTAAATTCCAAACATCCCTCATCACTGTATATTCTCTTTTTCTTCAGAACCTCAATCGATGCTGTCTCGTTGTCTGTGTCCTCGACGGAAAAAATCTGGGGAAACTATAATAGTGACTGCAGATGAAGCCAACCATGGACATATGAAATCTGTATCCGAAACGATAGATAGACTCGAGACAATTCTAAAGTCCAGATCAGTGCCACTCCAAACCAAACGTGGTTTTTGAAATCGCCCCAAGTTTTTCAAATTCTACGCTACGTGAAAACTGAGGAACTGGGCGTACGTCAACCAAATTGTGAAGCAGACTTGTCCGAGGAGAAGCGCACTCTGAGATTTGATGAAATTCCAAAGTTCGAGACCTATGAAAATATTCGAGATATTCGCGTTTTCGACTTTGTGATGACGAATCCAGTCTTGGACTTTCTGGACAAACCTGTTCTTTTAATGCGGCGTGTTAGAGTTTCTCGAGACGACATTCTGAGTTTGAAGCAGGTTAGTTTGAGTTGGTTATTTCCGAATTTTTACGTGACGAATTTTTGGTGCATTGACGCGCTTTTTGTGCCTTGGAACATTTTCGGTGCATTGACGCATGTTTGTTGCATTGGCGTTTTTTGTTTCGGTTCAGTTTTCCTTGCCTGGACGCATTTTTTGTGCTTTTATGCGTTTCCGGTGACTTGACGCATTTTTGGTGCATAGACGCAATTTCAGTGTCTTGACGCATTTTTGGATCTTTGACGCTTTTTTGGTTC</canonical>
            <polymorphic>TAGGAGCAGTCATATCATCCTATAAGGCCCAAAACTGAAACTACTCACACATTTCAAATACTAGTACATTATTCCAATATCTGTGCGTTTTCAAATTTTGGACCTCTAAACTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTATTTTGGGGCCTCTAATTTTTTTTCGGACCTGTAAATTGTTTTGGGACCTCTAAACTAGAAAAGAGCCAAAAAATCCAGGTAAAAAAATTAGGAATTTCTAAATTCCAAACATCCCTCATCACTGTATATTCTCTTTTTCTTCAGAACCTCAATCGATGCTGTCTCGTTGTCTGTGTCCTCGACGGAAAAAATCTGGGGAAACTATAATAGTGACTGCAGATGAAGCCAACCATGGACATATGAAATCTGTATCCGAAACGATAGATAGACTCGAGACAATTCTAAAGTCCAGATCAGTGCCACTCCAAACCAAACGTGGTTTTTGAAATCGCCCCAAGTTTTTCAAATYCTACGCTACGTGAAAACTGAGGAACTGGGCGTACGTCAACCAAATTGTGAAGCAGACTTGTCCGAGGAGAAGCGCACTCTGAGATTTGATGAAATTCCAAAGTTCGAGACCTATGAAAATATTCGAGATATTCGCGTTTTCGACTTTGTGATGACGAATCCAGTCTTGGACTTTCTGGACAAACCTGTTCTTTTAATGCGGCGTGTTAGAGTTTCTCGAGACGACATTCTGAGTTTGAAGCAGGTTAGTTTGAGTTGGTTATTTCCGAATTTTTACGTGACGAATTTTTGGTGCATTGACGCGCTTTTTGTGCCTTGGAACATTTTCGGTGCATTGACGCATGTTTGTTGCATTGGCGTTTTTTGTTTCGGTTCAGTTTTCCTTGCCTGGACGCATTTTTTGTGCTTTTATGCGTTTCCGGTGACTTGACGCATTTTTGGTGCATAGACGCAATTTCAGTGTCTTGACGCATTTTTGGATCTTTGACGCTTTTTTGGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>245 218 175 150 96 93 15 8</canonical_bands>
                <polymorphic_bands>341 218 175 150 93 15 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>177 175 169 93 68 52 50 49 46 38 33 20 15 8 7</canonical_bands>
                <polymorphic_bands>177 175 169 114 93 52 50 49 38 33 20 15 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATTCTAAAGTCCAGATCAGTG</pcr_primer_p1>
		<pcr_primer_p2>AGAAAGTCCAAGACTGGATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAATTCTAAAGTCCAGATCAGTGCCACTCCAAACCAAACGTGGTTTTTGAAATCGCCCCAAGTTTTTCAAATTCTACGCTACGTGAAAACTGAGGAACTGGGCGTACGTCAACCAAATTGTGAAGCAGACTTGTCCGAGGAGAAGCGCACTCTGAGATTTGATGAAATTCCAAAGTTCGAGACCTATGAAAATATTCGAGATATTCGCGTTTTCGACTTTGTGATGACGAATCCAGTCTTGGACTTTCT</canonical_amplicon>
		<polymorphic_amplicon>CAATTCTAAAGTCCAGATCAGTGCCACTCCAAACCAAACGTGGTTTTTGAAATCGCCCCAAGTTTTTCAAATYCTACGCTACGTGAAAACTGAGGAACTGGGCGTACGTCAACCAAATTGTGAAGCAGACTTGTCCGAGGAGAAGCGCACTCTGAGATTTGATGAAATTCCAAAGTTCGAGACCTATGAAAATATTCGAGATATTCGCGTTTTCGACTTTGTGATGACGAATCCAGTCTTGGACTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35995</snp_id>
        <super_contig>c010300616.Contig1</super_contig>
        <contig_pos>24408</contig_pos>
        <strand>+</strand>
        <context>CTGGGCGTAC[G/T]TCAACCAARW</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCAAGTTTTTCAAATTCTACGCTACGTGAAAACTGAGGAACTGGGCGTAC</left_flank>
        <right_flank>TCAACCAAATTGTGAAGCAGACTTGTCCGAGGAGAAGCGCACTCTGAGAT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAACTACTCACACATTTCAAATACTAGTACATTATTCCAATATCTGTGCGTTTTCAAATTTTGGACCTCTAAACTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTATTTTGGGGCCTCTAATTTTTTTTCGGACCTGTAAATTGTTTTGGGACCTCTAAACTAGAAAAGAGCCAAAAAATCCAGGTAAAAAAATTAGGAATTTCTAAATTCCAAACATCCCTCATCACTGTATATTCTCTTTTTCTTCAGAACCTCAATCGATGCTGTCTCGTTGTCTGTGTCCTCGACGGAAAAAATCTGGGGAAACTATAATAGTGACTGCAGATGAAGCCAACCATGGACATATGAAATCTGTATCCGAAACGATAGATAGACTCGAGACAATTCTAAAGTCCAGATCAGTGCCACTCCAAACCAAACGTGGTTTTTGAAATCGCCCCAAGTTTTTCAAATTCTACGCTACGTGAAAACTGAGGAACTGGGCGTACGTCAACCAAATTGTGAAGCAGACTTGTCCGAGGAGAAGCGCACTCTGAGATTTGATGAAATTCCAAAGTTCGAGACCTATGAAAATATTCGAGATATTCGCGTTTTCGACTTTGTGATGACGAATCCAGTCTTGGACTTTCTGGACAAACCTGTTCTTTTAATGCGGCGTGTTAGAGTTTCTCGAGACGACATTCTGAGTTTGAAGCAGGTTAGTTTGAGTTGGTTATTTCCGAATTTTTACGTGACGAATTTTTGGTGCATTGACGCGCTTTTTGTGCCTTGGAACATTTTCGGTGCATTGACGCATGTTTGTTGCATTGGCGTTTTTTGTTTCGGTTCAGTTTTCCTTGCCTGGACGCATTTTTTGTGCTTTTATGCGTTTCCGGTGACTTGACGCATTTTTGGTGCATAGACGCAATTTCAGTGTCTTGACGCATTTTTGGATCTTTGACGCTTTTTTGGTTCACTGACGTATTTTTGGTGCCTTGACGCTTTTTTTG</canonical>
            <polymorphic>TGAAACTACTCACACATTTCAAATACTAGTACATTATTCCAATATCTGTGCGTTTTCAAATTTTGGACCTCTAAACTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTATTTTGGGGCCTCTAATTTTTTTTCGGACCTGTAAATTGTTTTGGGACCTCTAAACTAGAAAAGAGCCAAAAAATCCAGGTAAAAAAATTAGGAATTTCTAAATTCCAAACATCCCTCATCACTGTATATTCTCTTTTTCTTCAGAACCTCAATCGATGCTGTCTCGTTGTCTGTGTCCTCGACGGAAAAAATCTGGGGAAACTATAATAGTGACTGCAGATGAAGCCAACCATGGACATATGAAATCTGTATCCGAAACGATAGATAGACTCGAGACAATTCTAAAGTCCAGATCAGTGCCACTCCAAACCAAACGTGGTTTTTGAAATCGCCCCAAGTTTTTCAAATTCTACGCTACGTGAAAACTGAGGAACTGGGCGTACKTCAACCAAATTGTGAAGCAGACTTGTCCGAGGAGAAGCGCACTCTGAGATTTGATGAAATTCCAAAGTTCGAGACCTATGAAAATATTCGAGATATTCGCGTTTTCGACTTTGTGATGACGAATCCAGTCTTGGACTTTCTGGACAAACCTGTTCTTTTAATGCGGCGTGTTAGAGTTTCTCGAGACGACATTCTGAGTTTGAAGCAGGTTAGTTTGAGTTGGTTATTTCCGAATTTTTACGTGACGAATTTTTGGTGCATTGACGCGCTTTTTGTGCCTTGGAACATTTTCGGTGCATTGACGCATGTTTGTTGCATTGGCGTTTTTTGTTTCGGTTCAGTTTTCCTTGCCTGGACGCATTTTTTGTGCTTTTATGCGTTTCCGGTGACTTGACGCATTTTTGGTGCATAGACGCAATTTCAGTGTCTTGACGCATTTTTGGATCTTTGACGCTTTTTTGGTTCACTGACGTATTTTTGGTGCCTTGACGCTTTTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGTACG</site>
                <isoschizomers>
                    <enzyme>BsiWI</enzyme>
                    <enzyme>Pfl23II</enzyme>
                    <enzyme>PspLI</enzyme>
                    <enzyme>SplI</enzyme>
                    <enzyme>SunI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 462 36</canonical_bands>
                <polymorphic_bands>964 36</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>430 242 230 43 30 25</canonical_bands>
                <polymorphic_bands>430 267 230 43 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATTCTAAAGTCCAGATCAGTG</pcr_primer_p1>
		<pcr_primer_p2>AGAAAGTCCAAGACTGGATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAATTCTAAAGTCCAGATCAGTGCCACTCCAAACCAAACGTGGTTTTTGAAATCGCCCCAAGTTTTTCAAATTCTACGCTACGTGAAAACTGAGGAACTGGGCGTACGTCAACCAAATTGTGAAGCAGACTTGTCCGAGGAGAAGCGCACTCTGAGATTTGATGAAATTCCAAAGTTCGAGACCTATGAAAATATTCGAGATATTCGCGTTTTCGACTTTGTGATGACGAATCCAGTCTTGGACTTTCT</canonical_amplicon>
		<polymorphic_amplicon>CAATTCTAAAGTCCAGATCAGTGCCACTCCAAACCAAACGTGGTTTTTGAAATCGCCCCAAGTTTTTCAAATTCTACGCTACGTGAAAACTGAGGAACTGGGCGTACKTCAACCAAATTGTGAAGCAGACTTGTCCGAGGAGAAGCGCACTCTGAGATTTGATGAAATTCCAAAGTTCGAGACCTATGAAAATATTCGAGATATTCGCGTTTTCGACTTTGTGATGACGAATCCAGTCTTGGACTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35996</snp_id>
        <super_contig>c010300616.Contig1</super_contig>
        <contig_pos>24417</contig_pos>
        <strand>+</strand>
        <context>CKTCAACCAA[A/G]WTGTGAAGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAAATTCTACGCTACGTGAAAACTGAGGAACTGGGCGTACGTCAACCAA</left_flank>
        <right_flank>TTGTGAAGCAGACTTGTCCGAGGAGAAGCGCACTCTGAGATTTGATGAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACACATTTCAAATACTAGTACATTATTCCAATATCTGTGCGTTTTCAAATTTTGGACCTCTAAACTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTATTTTGGGGCCTCTAATTTTTTTTCGGACCTGTAAATTGTTTTGGGACCTCTAAACTAGAAAAGAGCCAAAAAATCCAGGTAAAAAAATTAGGAATTTCTAAATTCCAAACATCCCTCATCACTGTATATTCTCTTTTTCTTCAGAACCTCAATCGATGCTGTCTCGTTGTCTGTGTCCTCGACGGAAAAAATCTGGGGAAACTATAATAGTGACTGCAGATGAAGCCAACCATGGACATATGAAATCTGTATCCGAAACGATAGATAGACTCGAGACAATTCTAAAGTCCAGATCAGTGCCACTCCAAACCAAACGTGGTTTTTGAAATCGCCCCAAGTTTTTCAAATTCTACGCTACGTGAAAACTGAGGAACTGGGCGTACGTCAACCAAATTGTGAAGCAGACTTGTCCGAGGAGAAGCGCACTCTGAGATTTGATGAAATTCCAAAGTTCGAGACCTATGAAAATATTCGAGATATTCGCGTTTTCGACTTTGTGATGACGAATCCAGTCTTGGACTTTCTGGACAAACCTGTTCTTTTAATGCGGCGTGTTAGAGTTTCTCGAGACGACATTCTGAGTTTGAAGCAGGTTAGTTTGAGTTGGTTATTTCCGAATTTTTACGTGACGAATTTTTGGTGCATTGACGCGCTTTTTGTGCCTTGGAACATTTTCGGTGCATTGACGCATGTTTGTTGCATTGGCGTTTTTTGTTTCGGTTCAGTTTTCCTTGCCTGGACGCATTTTTTGTGCTTTTATGCGTTTCCGGTGACTTGACGCATTTTTGGTGCATAGACGCAATTTCAGTGTCTTGACGCATTTTTGGATCTTTGACGCTTTTTTGGTTCACTGACGTATTTTTGGTGCCTTGACGCTTTTTTTGAGCTTTGAT</canonical>
            <polymorphic>TCACACATTTCAAATACTAGTACATTATTCCAATATCTGTGCGTTTTCAAATTTTGGACCTCTAAACTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTATTTTGGGGCCTCTAATTTTTTTTCGGACCTGTAAATTGTTTTGGGACCTCTAAACTAGAAAAGAGCCAAAAAATCCAGGTAAAAAAATTAGGAATTTCTAAATTCCAAACATCCCTCATCACTGTATATTCTCTTTTTCTTCAGAACCTCAATCGATGCTGTCTCGTTGTCTGTGTCCTCGACGGAAAAAATCTGGGGAAACTATAATAGTGACTGCAGATGAAGCCAACCATGGACATATGAAATCTGTATCCGAAACGATAGATAGACTCGAGACAATTCTAAAGTCCAGATCAGTGCCACTCCAAACCAAACGTGGTTTTTGAAATCGCCCCAAGTTTTTCAAATTCTACGCTACGTGAAAACTGAGGAACTGGGCGTACGTCAACCAARTTGTGAAGCAGACTTGTCCGAGGAGAAGCGCACTCTGAGATTTGATGAAATTCCAAAGTTCGAGACCTATGAAAATATTCGAGATATTCGCGTTTTCGACTTTGTGATGACGAATCCAGTCTTGGACTTTCTGGACAAACCTGTTCTTTTAATGCGGCGTGTTAGAGTTTCTCGAGACGACATTCTGAGTTTGAAGCAGGTTAGTTTGAGTTGGTTATTTCCGAATTTTTACGTGACGAATTTTTGGTGCATTGACGCGCTTTTTGTGCCTTGGAACATTTTCGGTGCATTGACGCATGTTTGTTGCATTGGCGTTTTTTGTTTCGGTTCAGTTTTCCTTGCCTGGACGCATTTTTTGTGCTTTTATGCGTTTCCGGTGACTTGACGCATTTTTGGTGCATAGACGCAATTTCAGTGTCTTGACGCATTTTTGGATCTTTGACGCTTTTTTGGTTCACTGACGTATTTTTGGTGCCTTGACGCTTTTTTTGAGCTTTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>177 175 169 93 68 52 50 49 46 38 33 20 15 8 7</canonical_bands>
                <polymorphic_bands>177 175 169 96 93 68 52 49 38 33 20 15 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATTCTAAAGTCCAGATCAGTG</pcr_primer_p1>
		<pcr_primer_p2>AGAAAGTCCAAGACTGGATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAATTCTAAAGTCCAGATCAGTGCCACTCCAAACCAAACGTGGTTTTTGAAATCGCCCCAAGTTTTTCAAATTCTACGCTACGTGAAAACTGAGGAACTGGGCGTACGTCAACCAAATTGTGAAGCAGACTTGTCCGAGGAGAAGCGCACTCTGAGATTTGATGAAATTCCAAAGTTCGAGACCTATGAAAATATTCGAGATATTCGCGTTTTCGACTTTGTGATGACGAATCCAGTCTTGGACTTTCT</canonical_amplicon>
		<polymorphic_amplicon>CAATTCTAAAGTCCAGATCAGTGCCACTCCAAACCAAACGTGGTTTTTGAAATCGCCCCAAGTTTTTCAAATTCTACGCTACGTGAAAACTGAGGAACTGGGCGTACGTCAACCAARTTGTGAAGCAGACTTGTCCGAGGAGAAGCGCACTCTGAGATTTGATGAAATTCCAAAGTTCGAGACCTATGAAAATATTCGAGATATTCGCGTTTTCGACTTTGTGATGACGAATCCAGTCTTGGACTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35997</snp_id>
        <super_contig>c010300616.Contig1</super_contig>
        <contig_pos>24418</contig_pos>
        <strand>+</strand>
        <context>KTCAACCAAR[A/T]TGTGAAGCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAATTCTACGCTACGTGAAAACTGAGGAACTGGGCGTACGTCAACCAAA</left_flank>
        <right_flank>TGTGAAGCAGACTTGTCCGAGGAGAAGCGCACTCTGAGATTTGATGAAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACACATTTCAAATACTAGTACATTATTCCAATATCTGTGCGTTTTCAAATTTTGGACCTCTAAACTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTATTTTGGGGCCTCTAATTTTTTTTCGGACCTGTAAATTGTTTTGGGACCTCTAAACTAGAAAAGAGCCAAAAAATCCAGGTAAAAAAATTAGGAATTTCTAAATTCCAAACATCCCTCATCACTGTATATTCTCTTTTTCTTCAGAACCTCAATCGATGCTGTCTCGTTGTCTGTGTCCTCGACGGAAAAAATCTGGGGAAACTATAATAGTGACTGCAGATGAAGCCAACCATGGACATATGAAATCTGTATCCGAAACGATAGATAGACTCGAGACAATTCTAAAGTCCAGATCAGTGCCACTCCAAACCAAACGTGGTTTTTGAAATCGCCCCAAGTTTTTCAAATTCTACGCTACGTGAAAACTGAGGAACTGGGCGTACGTCAACCAAATTGTGAAGCAGACTTGTCCGAGGAGAAGCGCACTCTGAGATTTGATGAAATTCCAAAGTTCGAGACCTATGAAAATATTCGAGATATTCGCGTTTTCGACTTTGTGATGACGAATCCAGTCTTGGACTTTCTGGACAAACCTGTTCTTTTAATGCGGCGTGTTAGAGTTTCTCGAGACGACATTCTGAGTTTGAAGCAGGTTAGTTTGAGTTGGTTATTTCCGAATTTTTACGTGACGAATTTTTGGTGCATTGACGCGCTTTTTGTGCCTTGGAACATTTTCGGTGCATTGACGCATGTTTGTTGCATTGGCGTTTTTTGTTTCGGTTCAGTTTTCCTTGCCTGGACGCATTTTTTGTGCTTTTATGCGTTTCCGGTGACTTGACGCATTTTTGGTGCATAGACGCAATTTCAGTGTCTTGACGCATTTTTGGATCTTTGACGCTTTTTTGGTTCACTGACGTATTTTTGGTGCCTTGACGCTTTTTTTGAGCTTTGATG</canonical>
            <polymorphic>CACACATTTCAAATACTAGTACATTATTCCAATATCTGTGCGTTTTCAAATTTTGGACCTCTAAACTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTATTTTGGGGCCTCTAATTTTTTTTCGGACCTGTAAATTGTTTTGGGACCTCTAAACTAGAAAAGAGCCAAAAAATCCAGGTAAAAAAATTAGGAATTTCTAAATTCCAAACATCCCTCATCACTGTATATTCTCTTTTTCTTCAGAACCTCAATCGATGCTGTCTCGTTGTCTGTGTCCTCGACGGAAAAAATCTGGGGAAACTATAATAGTGACTGCAGATGAAGCCAACCATGGACATATGAAATCTGTATCCGAAACGATAGATAGACTCGAGACAATTCTAAAGTCCAGATCAGTGCCACTCCAAACCAAACGTGGTTTTTGAAATCGCCCCAAGTTTTTCAAATTCTACGCTACGTGAAAACTGAGGAACTGGGCGTACGTCAACCAAAWTGTGAAGCAGACTTGTCCGAGGAGAAGCGCACTCTGAGATTTGATGAAATTCCAAAGTTCGAGACCTATGAAAATATTCGAGATATTCGCGTTTTCGACTTTGTGATGACGAATCCAGTCTTGGACTTTCTGGACAAACCTGTTCTTTTAATGCGGCGTGTTAGAGTTTCTCGAGACGACATTCTGAGTTTGAAGCAGGTTAGTTTGAGTTGGTTATTTCCGAATTTTTACGTGACGAATTTTTGGTGCATTGACGCGCTTTTTGTGCCTTGGAACATTTTCGGTGCATTGACGCATGTTTGTTGCATTGGCGTTTTTTGTTTCGGTTCAGTTTTCCTTGCCTGGACGCATTTTTTGTGCTTTTATGCGTTTCCGGTGACTTGACGCATTTTTGGTGCATAGACGCAATTTCAGTGTCTTGACGCATTTTTGGATCTTTGACGCTTTTTTGGTTCACTGACGTATTTTTGGTGCCTTGACGCTTTTTTTGAGCTTTGATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>177 175 169 94 68 52 50 48 46 38 33 20 15 8 7</canonical_bands>
                <polymorphic_bands>177 175 169 96 94 68 52 48 38 33 20 15 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATTCTAAAGTCCAGATCAGTG</pcr_primer_p1>
		<pcr_primer_p2>AGAAAGTCCAAGACTGGATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAATTCTAAAGTCCAGATCAGTGCCACTCCAAACCAAACGTGGTTTTTGAAATCGCCCCAAGTTTTTCAAATTCTACGCTACGTGAAAACTGAGGAACTGGGCGTACGTCAACCAAATTGTGAAGCAGACTTGTCCGAGGAGAAGCGCACTCTGAGATTTGATGAAATTCCAAAGTTCGAGACCTATGAAAATATTCGAGATATTCGCGTTTTCGACTTTGTGATGACGAATCCAGTCTTGGACTTTCT</canonical_amplicon>
		<polymorphic_amplicon>CAATTCTAAAGTCCAGATCAGTGCCACTCCAAACCAAACGTGGTTTTTGAAATCGCCCCAAGTTTTTCAAATTCTACGCTACGTGAAAACTGAGGAACTGGGCGTACGTCAACCAAAWTGTGAAGCAGACTTGTCCGAGGAGAAGCGCACTCTGAGATTTGATGAAATTCCAAAGTTCGAGACCTATGAAAATATTCGAGATATTCGCGTTTTCGACTTTGTGATGACGAATCCAGTCTTGGACTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35998</snp_id>
        <super_contig>c010300616.Contig1</super_contig>
        <contig_pos>24567</contig_pos>
        <strand>+</strand>
        <context>CCTGTTCTTT[C/T]AATGCGGCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTGTGATGACGAATCCAGTCTTGGACTTTCTGGACAAACCTGTTCTTT</left_flank>
        <right_flank>AATGCGGCGTGTTAGAGTTTCTCGAGACGACATTCTGAGTTTGAAGCAGG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGACCTCTAAACTAGAAAAGAGCCAAAAAATCCAGGTAAAAAAATTAGGAATTTCTAAATTCCAAACATCCCTCATCACTGTATATTCTCTTTTTCTTCAGAACCTCAATCGATGCTGTCTCGTTGTCTGTGTCCTCGACGGAAAAAATCTGGGGAAACTATAATAGTGACTGCAGATGAAGCCAACCATGGACATATGAAATCTGTATCCGAAACGATAGATAGACTCGAGACAATTCTAAAGTCCAGATCAGTGCCACTCCAAACCAAACGTGGTTTTTGAAATCGCCCCAAGTTTTTCAAATTCTACGCTACGTGAAAACTGAGGAACTGGGCGTACGTCAACCAAATTGTGAAGCAGACTTGTCCGAGGAGAAGCGCACTCTGAGATTTGATGAAATTCCAAAGTTCGAGACCTATGAAAATATTCGAGATATTCGCGTTTTCGACTTTGTGATGACGAATCCAGTCTTGGACTTTCTGGACAAACCTGTTCTTTTAATGCGGCGTGTTAGAGTTTCTCGAGACGACATTCTGAGTTTGAAGCAGGTTAGTTTGAGTTGGTTATTTCCGAATTTTTACGTGACGAATTTTTGGTGCATTGACGCGCTTTTTGTGCCTTGGAACATTTTCGGTGCATTGACGCATGTTTGTTGCATTGGCGTTTTTTGTTTCGGTTCAGTTTTCCTTGCCTGGACGCATTTTTTGTGCTTTTATGCGTTTCCGGTGACTTGACGCATTTTTGGTGCATAGACGCAATTTCAGTGTCTTGACGCATTTTTGGATCTTTGACGCTTTTTTGGTTCACTGACGTATTTTTGGTGCCTTGACGCTTTTTTTGAGCTTTGATGCATTTTTTATGCGTTGACGTATTTTTGAGATATATTTTTGAGAGGCACGTTTACAGTATTTTTGAATTTTTTCTTCGTTTTTTTCCGGTGATTGTATCTGACTTCTAGGTGATCCTATATGGTTCCATATACTTGGATATACTAACAGT</canonical>
            <polymorphic>GGACCTCTAAACTAGAAAAGAGCCAAAAAATCCAGGTAAAAAAATTAGGAATTTCTAAATTCCAAACATCCCTCATCACTGTATATTCTCTTTTTCTTCAGAACCTCAATCGATGCTGTCTCGTTGTCTGTGTCCTCGACGGAAAAAATCTGGGGAAACTATAATAGTGACTGCAGATGAAGCCAACCATGGACATATGAAATCTGTATCCGAAACGATAGATAGACTCGAGACAATTCTAAAGTCCAGATCAGTGCCACTCCAAACCAAACGTGGTTTTTGAAATCGCCCCAAGTTTTTCAAATTCTACGCTACGTGAAAACTGAGGAACTGGGCGTACGTCAACCAAATTGTGAAGCAGACTTGTCCGAGGAGAAGCGCACTCTGAGATTTGATGAAATTCCAAAGTTCGAGACCTATGAAAATATTCGAGATATTCGCGTTTTCGACTTTGTGATGACGAATCCAGTCTTGGACTTTCTGGACAAACCTGTTCTTTYAATGCGGCGTGTTAGAGTTTCTCGAGACGACATTCTGAGTTTGAAGCAGGTTAGTTTGAGTTGGTTATTTCCGAATTTTTACGTGACGAATTTTTGGTGCATTGACGCGCTTTTTGTGCCTTGGAACATTTTCGGTGCATTGACGCATGTTTGTTGCATTGGCGTTTTTTGTTTCGGTTCAGTTTTCCTTGCCTGGACGCATTTTTTGTGCTTTTATGCGTTTCCGGTGACTTGACGCATTTTTGGTGCATAGACGCAATTTCAGTGTCTTGACGCATTTTTGGATCTTTGACGCTTTTTTGGTTCACTGACGTATTTTTGGTGCCTTGACGCTTTTTTTGAGCTTTGATGCATTTTTTATGCGTTGACGTATTTTTGAGATATATTTTTGAGAGGCACGTTTACAGTATTTTTGAATTTTTTCTTCGTTTTTTTCCGGTGATTGTATCTGACTTCTAGGTGATCCTATATGGTTCCATATACTTGGATATACTAACAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACGTGAAAACTGAGGAACTG</pcr_primer_p1>
		<pcr_primer_p2>AACTCAAACTAACCTGCTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACGTGAAAACTGAGGAACTGGGCGTACGTCAACCAAATTGTGAAGCAGACTTGTCCGAGGAGAAGCGCACTCTGAGATTTGATGAAATTCCAAAGTTCGAGACCTATGAAAATATTCGAGATATTCGCGTTTTCGACTTTGTGATGACGAATCCAGTCTTGGACTTTCTGGACAAACCTGTTCTTTTAATGCGGCGTGTTAGAGTTTCTCGAGACGACATTCTGAGTTTGAAGCAGGTTAGTTTGAGTT</canonical_amplicon>
		<polymorphic_amplicon>TACGTGAAAACTGAGGAACTGGGCGTACGTCAACCAAATTGTGAAGCAGACTTGTCCGAGGAGAAGCGCACTCTGAGATTTGATGAAATTCCAAAGTTCGAGACCTATGAAAATATTCGAGATATTCGCGTTTTCGACTTTGTGATGACGAATCCAGTCTTGGACTTTCTGGACAAACCTGTTCTTTYAATGCGGCGTGTTAGAGTTTCTCGAGACGACATTCTGAGTTTGAAGCAGGTTAGTTTGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb35999</snp_id>
        <super_contig>c010300616.Contig1</super_contig>
        <contig_pos>24762</contig_pos>
        <strand>+</strand>
        <context>TTCCTTGCCT[A/G]GACGCATTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCATGTTTGTTGCATTGGCGTTTTTTGTTTCGGTTCAGTTTTCCTTGCCT</left_flank>
        <right_flank>GACGCATTTTTTGTGCTTTTATGCGTTTCCGGTGACTTGACGCATTTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGAAATCTGTATCCGAAACGATAGATAGACTCGAGACAATTCTAAAGTCCAGATCAGTGCCACTCCAAACCAAACGTGGTTTTTGAAATCGCCCCAAGTTTTTCAAATTCTACGCTACGTGAAAACTGAGGAACTGGGCGTACGTCAACCAAATTGTGAAGCAGACTTGTCCGAGGAGAAGCGCACTCTGAGATTTGATGAAATTCCAAAGTTCGAGACCTATGAAAATATTCGAGATATTCGCGTTTTCGACTTTGTGATGACGAATCCAGTCTTGGACTTTCTGGACAAACCTGTTCTTTTAATGCGGCGTGTTAGAGTTTCTCGAGACGACATTCTGAGTTTGAAGCAGGTTAGTTTGAGTTGGTTATTTCCGAATTTTTACGTGACGAATTTTTGGTGCATTGACGCGCTTTTTGTGCCTTGGAACATTTTCGGTGCATTGACGCATGTTTGTTGCATTGGCGTTTTTTGTTTCGGTTCAGTTTTCCTTGCCTGGACGCATTTTTTGTGCTTTTATGCGTTTCCGGTGACTTGACGCATTTTTGGTGCATAGACGCAATTTCAGTGTCTTGACGCATTTTTGGATCTTTGACGCTTTTTTGGTTCACTGACGTATTTTTGGTGCCTTGACGCTTTTTTTGAGCTTTGATGCATTTTTTATGCGTTGACGTATTTTTGAGATATATTTTTGAGAGGCACGTTTACAGTATTTTTGAATTTTTTCTTCGTTTTTTTCCGGTGATTGTATCTGACTTCTAGGTGATCCTATATGGTTCCATATACTTGGATATACTAACAGTTTTTCCTATTATTTTCCATATACTAACAGTTTTTCCTATTATTTTCGAAACTTTTTGTTTTCATCTATTTTTCCACAATTTTCAAAGGATAGTAATCCATTGAAGATTCTAGACAAACCGCATATTTTTGATTTTGCTCAAACTATTGTCATTGGTTCTTTTGGGCACGCTGATTACAAAGCTGAAGTCAGTTTT</canonical>
            <polymorphic>TATGAAATCTGTATCCGAAACGATAGATAGACTCGAGACAATTCTAAAGTCCAGATCAGTGCCACTCCAAACCAAACGTGGTTTTTGAAATCGCCCCAAGTTTTTCAAATTCTACGCTACGTGAAAACTGAGGAACTGGGCGTACGTCAACCAAATTGTGAAGCAGACTTGTCCGAGGAGAAGCGCACTCTGAGATTTGATGAAATTCCAAAGTTCGAGACCTATGAAAATATTCGAGATATTCGCGTTTTCGACTTTGTGATGACGAATCCAGTCTTGGACTTTCTGGACAAACCTGTTCTTTTAATGCGGCGTGTTAGAGTTTCTCGAGACGACATTCTGAGTTTGAAGCAGGTTAGTTTGAGTTGGTTATTTCCGAATTTTTACGTGACGAATTTTTGGTGCATTGACGCGCTTTTTGTGCCTTGGAACATTTTCGGTGCATTGACGCATGTTTGTTGCATTGGCGTTTTTTGTTTCGGTTCAGTTTTCCTTGCCTRGACGCATTTTTTGTGCTTTTATGCGTTTCCGGTGACTTGACGCATTTTTGGTGCATAGACGCAATTTCAGTGTCTTGACGCATTTTTGGATCTTTGACGCTTTTTTGGTTCACTGACGTATTTTTGGTGCCTTGACGCTTTTTTTGAGCTTTGATGCATTTTTTATGCGTTGACGTATTTTTGAGATATATTTTTGAGAGGCACGTTTACAGTATTTTTGAATTTTTTCTTCGTTTTTTTCCGGTGATTGTATCTGACTTCTAGGTGATCCTATATGGTTCCATATACTTGGATATACTAACAGTTTTTCCTATTATTTTCCATATACTAACAGTTTTTCCTATTATTTTCGAAACTTTTTGTTTTCATCTATTTTTCCACAATTTTCAAAGGATAGTAATCCATTGAAGATTCTAGACAAACCGCATATTTTTGATTTTGCTCAAACTATTGTCATTGGTTCTTTTGGGCACGCTGATTACAAAGCTGAAGTCAGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTTCCGAATTTTTACGTGAC</pcr_primer_p1>
		<pcr_primer_p2>AATGCATCAAAGCTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>290</pcr_amplicon_size>
		<canonical_amplicon>TATTTCCGAATTTTTACGTGACGAATTTTTGGTGCATTGACGCGCTTTTTGTGCCTTGGAACATTTTCGGTGCATTGACGCATGTTTGTTGCATTGGCGTTTTTTGTTTCGGTTCAGTTTTCCTTGCCTGGACGCATTTTTTGTGCTTTTATGCGTTTCCGGTGACTTGACGCATTTTTGGTGCATAGACGCAATTTCAGTGTCTTGACGCATTTTTGGATCTTTGACGCTTTTTTGGTTCACTGACGTATTTTTGGTGCCTTGACGCTTTTTTTGAGCTTTGATGCATT</canonical_amplicon>
		<polymorphic_amplicon>TATTTCCGAATTTTTACGTGACGAATTTTTGGTGCATTGACGCGCTTTTTGTGCCTTGGAACATTTTCGGTGCATTGACGCATGTTTGTTGCATTGGCGTTTTTTGTTTCGGTTCAGTTTTCCTTGCCTRGACGCATTTTTTGTGCTTTTATGCGTTTCCGGTGACTTGACGCATTTTTGGTGCATAGACGCAATTTCAGTGTCTTGACGCATTTTTGGATCTTTGACGCTTTTTTGGTTCACTGACGTATTTTTGGTGCCTTGACGCTTTTTTTGAGCTTTGATGCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36000</snp_id>
        <super_contig>c010300616.Contig1</super_contig>
        <contig_pos>24835</contig_pos>
        <strand>+</strand>
        <context>AATTTCAGTG[C/T]CTTGACGCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCGTTTCCGGTGACTTGACGCATTTTTGGTGCATAGACGCAATTTCAGTG</left_flank>
        <right_flank>CTTGACGCATTTTTGGATCTTTGACGCTTTTTTGGTTCACTGACGTATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACGTGGTTTTTGAAATCGCCCCAAGTTTTTCAAATTCTACGCTACGTGAAAACTGAGGAACTGGGCGTACGTCAACCAAATTGTGAAGCAGACTTGTCCGAGGAGAAGCGCACTCTGAGATTTGATGAAATTCCAAAGTTCGAGACCTATGAAAATATTCGAGATATTCGCGTTTTCGACTTTGTGATGACGAATCCAGTCTTGGACTTTCTGGACAAACCTGTTCTTTTAATGCGGCGTGTTAGAGTTTCTCGAGACGACATTCTGAGTTTGAAGCAGGTTAGTTTGAGTTGGTTATTTCCGAATTTTTACGTGACGAATTTTTGGTGCATTGACGCGCTTTTTGTGCCTTGGAACATTTTCGGTGCATTGACGCATGTTTGTTGCATTGGCGTTTTTTGTTTCGGTTCAGTTTTCCTTGCCTGGACGCATTTTTTGTGCTTTTATGCGTTTCCGGTGACTTGACGCATTTTTGGTGCATAGACGCAATTTCAGTGTCTTGACGCATTTTTGGATCTTTGACGCTTTTTTGGTTCACTGACGTATTTTTGGTGCCTTGACGCTTTTTTTGAGCTTTGATGCATTTTTTATGCGTTGACGTATTTTTGAGATATATTTTTGAGAGGCACGTTTACAGTATTTTTGAATTTTTTCTTCGTTTTTTTCCGGTGATTGTATCTGACTTCTAGGTGATCCTATATGGTTCCATATACTTGGATATACTAACAGTTTTTCCTATTATTTTCCATATACTAACAGTTTTTCCTATTATTTTCGAAACTTTTTGTTTTCATCTATTTTTCCACAATTTTCAAAGGATAGTAATCCATTGAAGATTCTAGACAAACCGCATATTTTTGATTTTGCTCAAACTATTGTCATTGGTTCTTTTGGGCACGCTGATTACAAAGCTGAAGTCAGTTTTTCCACCCCGGCCTTGTGAAAAAATTTATGAGCTATAAAAGTGACTACAGTACTAATTTCTCATTTTTGGAGTG</canonical>
            <polymorphic>AAACGTGGTTTTTGAAATCGCCCCAAGTTTTTCAAATTCTACGCTACGTGAAAACTGAGGAACTGGGCGTACGTCAACCAAATTGTGAAGCAGACTTGTCCGAGGAGAAGCGCACTCTGAGATTTGATGAAATTCCAAAGTTCGAGACCTATGAAAATATTCGAGATATTCGCGTTTTCGACTTTGTGATGACGAATCCAGTCTTGGACTTTCTGGACAAACCTGTTCTTTTAATGCGGCGTGTTAGAGTTTCTCGAGACGACATTCTGAGTTTGAAGCAGGTTAGTTTGAGTTGGTTATTTCCGAATTTTTACGTGACGAATTTTTGGTGCATTGACGCGCTTTTTGTGCCTTGGAACATTTTCGGTGCATTGACGCATGTTTGTTGCATTGGCGTTTTTTGTTTCGGTTCAGTTTTCCTTGCCTGGACGCATTTTTTGTGCTTTTATGCGTTTCCGGTGACTTGACGCATTTTTGGTGCATAGACGCAATTTCAGTGYCTTGACGCATTTTTGGATCTTTGACGCTTTTTTGGTTCACTGACGTATTTTTGGTGCCTTGACGCTTTTTTTGAGCTTTGATGCATTTTTTATGCGTTGACGTATTTTTGAGATATATTTTTGAGAGGCACGTTTACAGTATTTTTGAATTTTTTCTTCGTTTTTTTCCGGTGATTGTATCTGACTTCTAGGTGATCCTATATGGTTCCATATACTTGGATATACTAACAGTTTTTCCTATTATTTTCCATATACTAACAGTTTTTCCTATTATTTTCGAAACTTTTTGTTTTCATCTATTTTTCCACAATTTTCAAAGGATAGTAATCCATTGAAGATTCTAGACAAACCGCATATTTTTGATTTTGCTCAAACTATTGTCATTGGTTCTTTTGGGCACGCTGATTACAAAGCTGAAGTCAGTTTTTCCACCCCGGCCTTGTGAAAAAATTTATGAGCTATAAAAGTGACTACAGTACTAATTTCTCATTTTTGGAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>340 246 159 143 51 40 19 2</canonical_bands>
                <polymorphic_bands>586 159 143 51 40 19 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTTTCGGTTCAGTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATACTGTAAACGTGCCTCTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTTTCGGTTCAGTTTTCCTTGCCTGGACGCATTTTTTGTGCTTTTATGCGTTTCCGGTGACTTGACGCATTTTTGGTGCATAGACGCAATTTCAGTGTCTTGACGCATTTTTGGATCTTTGACGCTTTTTTGGTTCACTGACGTATTTTTGGTGCCTTGACGCTTTTTTTGAGCTTTGATGCATTTTTTATGCGTTGACGTATTTTTGAGATATATTTTTGAGAGGCACGTTTACAGTATTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTTTCGGTTCAGTTTTCCTTGCCTGGACGCATTTTTTGTGCTTTTATGCGTTTCCGGTGACTTGACGCATTTTTGGTGCATAGACGCAATTTCAGTGYCTTGACGCATTTTTGGATCTTTGACGCTTTTTTGGTTCACTGACGTATTTTTGGTGCCTTGACGCTTTTTTTGAGCTTTGATGCATTTTTTATGCGTTGACGTATTTTTGAGATATATTTTTGAGAGGCACGTTTACAGTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36001</snp_id>
        <super_contig>c010300616.Contig1</super_contig>
        <contig_pos>24855</contig_pos>
        <strand>+</strand>
        <context>TTTTTGGATC[G/T]TTGACGCTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATTTTTGGTGCATAGACGCAATTTCAGTGTCTTGACGCATTTTTGGATC</left_flank>
        <right_flank>TTGACGCTTTTTTGGTTCACTGACGTATTTTTGGTGCCTTGACGCTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCCAAGTTTTTCAAATTCTACGCTACGTGAAAACTGAGGAACTGGGCGTACGTCAACCAAATTGTGAAGCAGACTTGTCCGAGGAGAAGCGCACTCTGAGATTTGATGAAATTCCAAAGTTCGAGACCTATGAAAATATTCGAGATATTCGCGTTTTCGACTTTGTGATGACGAATCCAGTCTTGGACTTTCTGGACAAACCTGTTCTTTTAATGCGGCGTGTTAGAGTTTCTCGAGACGACATTCTGAGTTTGAAGCAGGTTAGTTTGAGTTGGTTATTTCCGAATTTTTACGTGACGAATTTTTGGTGCATTGACGCGCTTTTTGTGCCTTGGAACATTTTCGGTGCATTGACGCATGTTTGTTGCATTGGCGTTTTTTGTTTCGGTTCAGTTTTCCTTGCCTGGACGCATTTTTTGTGCTTTTATGCGTTTCCGGTGACTTGACGCATTTTTGGTGCATAGACGCAATTTCAGTGTCTTGACGCATTTTTGGATCTTTGACGCTTTTTTGGTTCACTGACGTATTTTTGGTGCCTTGACGCTTTTTTTGAGCTTTGATGCATTTTTTATGCGTTGACGTATTTTTGAGATATATTTTTGAGAGGCACGTTTACAGTATTTTTGAATTTTTTCTTCGTTTTTTTCCGGTGATTGTATCTGACTTCTAGGTGATCCTATATGGTTCCATATACTTGGATATACTAACAGTTTTTCCTATTATTTTCCATATACTAACAGTTTTTCCTATTATTTTCGAAACTTTTTGTTTTCATCTATTTTTCCACAATTTTCAAAGGATAGTAATCCATTGAAGATTCTAGACAAACCGCATATTTTTGATTTTGCTCAAACTATTGTCATTGGTTCTTTTGGGCACGCTGATTACAAAGCTGAAGTCAGTTTTTCCACCCCGGCCTTGTGAAAAAATTTATGAGCTATAAAAGTGACTACAGTACTAATTTCTCATTTTTGGAGTGAGTTTCTGAAGGAGTTATTG</canonical>
            <polymorphic>CCCCAAGTTTTTCAAATTCTACGCTACGTGAAAACTGAGGAACTGGGCGTACGTCAACCAAATTGTGAAGCAGACTTGTCCGAGGAGAAGCGCACTCTGAGATTTGATGAAATTCCAAAGTTCGAGACCTATGAAAATATTCGAGATATTCGCGTTTTCGACTTTGTGATGACGAATCCAGTCTTGGACTTTCTGGACAAACCTGTTCTTTTAATGCGGCGTGTTAGAGTTTCTCGAGACGACATTCTGAGTTTGAAGCAGGTTAGTTTGAGTTGGTTATTTCCGAATTTTTACGTGACGAATTTTTGGTGCATTGACGCGCTTTTTGTGCCTTGGAACATTTTCGGTGCATTGACGCATGTTTGTTGCATTGGCGTTTTTTGTTTCGGTTCAGTTTTCCTTGCCTGGACGCATTTTTTGTGCTTTTATGCGTTTCCGGTGACTTGACGCATTTTTGGTGCATAGACGCAATTTCAGTGTCTTGACGCATTTTTGGATCKTTGACGCTTTTTTGGTTCACTGACGTATTTTTGGTGCCTTGACGCTTTTTTTGAGCTTTGATGCATTTTTTATGCGTTGACGTATTTTTGAGATATATTTTTGAGAGGCACGTTTACAGTATTTTTGAATTTTTTCTTCGTTTTTTTCCGGTGATTGTATCTGACTTCTAGGTGATCCTATATGGTTCCATATACTTGGATATACTAACAGTTTTTCCTATTATTTTCCATATACTAACAGTTTTTCCTATTATTTTCGAAACTTTTTGTTTTCATCTATTTTTCCACAATTTTCAAAGGATAGTAATCCATTGAAGATTCTAGACAAACCGCATATTTTTGATTTTGCTCAAACTATTGTCATTGGTTCTTTTGGGCACGCTGATTACAAAGCTGAAGTCAGTTTTTCCACCCCGGCCTTGTGAAAAAATTTATGAGCTATAAAAGTGACTACAGTACTAATTTCTCATTTTTGGAGTGAGTTTCTGAAGGAGTTATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTTTCGGTTCAGTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATACTGTAAACGTGCCTCTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTTTCGGTTCAGTTTTCCTTGCCTGGACGCATTTTTTGTGCTTTTATGCGTTTCCGGTGACTTGACGCATTTTTGGTGCATAGACGCAATTTCAGTGTCTTGACGCATTTTTGGATCTTTGACGCTTTTTTGGTTCACTGACGTATTTTTGGTGCCTTGACGCTTTTTTTGAGCTTTGATGCATTTTTTATGCGTTGACGTATTTTTGAGATATATTTTTGAGAGGCACGTTTACAGTATTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTTTCGGTTCAGTTTTCCTTGCCTGGACGCATTTTTTGTGCTTTTATGCGTTTCCGGTGACTTGACGCATTTTTGGTGCATAGACGCAATTTCAGTGTCTTGACGCATTTTTGGATCKTTGACGCTTTTTTGGTTCACTGACGTATTTTTGGTGCCTTGACGCTTTTTTTGAGCTTTGATGCATTTTTTATGCGTTGACGTATTTTTGAGATATATTTTTGAGAGGCACGTTTACAGTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36002</snp_id>
        <super_contig>c010300616.Contig1</super_contig>
        <contig_pos>24872</contig_pos>
        <strand>+</strand>
        <context>CTTTTTTGGT[G/T]CACTGACGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGCAATTTCAGTGTCTTGACGCATTTTTGGATCTTTGACGCTTTTTTGGT</left_flank>
        <right_flank>CACTGACGTATTTTTGGTGCCTTGACGCTTTTTTTGAGCTTTGATGCATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTACGCTACGTGAAAACTGAGGAACTGGGCGTACGTCAACCAAATTGTGAAGCAGACTTGTCCGAGGAGAAGCGCACTCTGAGATTTGATGAAATTCCAAAGTTCGAGACCTATGAAAATATTCGAGATATTCGCGTTTTCGACTTTGTGATGACGAATCCAGTCTTGGACTTTCTGGACAAACCTGTTCTTTTAATGCGGCGTGTTAGAGTTTCTCGAGACGACATTCTGAGTTTGAAGCAGGTTAGTTTGAGTTGGTTATTTCCGAATTTTTACGTGACGAATTTTTGGTGCATTGACGCGCTTTTTGTGCCTTGGAACATTTTCGGTGCATTGACGCATGTTTGTTGCATTGGCGTTTTTTGTTTCGGTTCAGTTTTCCTTGCCTGGACGCATTTTTTGTGCTTTTATGCGTTTCCGGTGACTTGACGCATTTTTGGTGCATAGACGCAATTTCAGTGTCTTGACGCATTTTTGGATCTTTGACGCTTTTTTGGTTCACTGACGTATTTTTGGTGCCTTGACGCTTTTTTTGAGCTTTGATGCATTTTTTATGCGTTGACGTATTTTTGAGATATATTTTTGAGAGGCACGTTTACAGTATTTTTGAATTTTTTCTTCGTTTTTTTCCGGTGATTGTATCTGACTTCTAGGTGATCCTATATGGTTCCATATACTTGGATATACTAACAGTTTTTCCTATTATTTTCCATATACTAACAGTTTTTCCTATTATTTTCGAAACTTTTTGTTTTCATCTATTTTTCCACAATTTTCAAAGGATAGTAATCCATTGAAGATTCTAGACAAACCGCATATTTTTGATTTTGCTCAAACTATTGTCATTGGTTCTTTTGGGCACGCTGATTACAAAGCTGAAGTCAGTTTTTCCACCCCGGCCTTGTGAAAAAATTTATGAGCTATAAAAGTGACTACAGTACTAATTTCTCATTTTTGGAGTGAGTTTCTGAAGGAGTTATTGACTTTTTTGGCTATATT</canonical>
            <polymorphic>TCTACGCTACGTGAAAACTGAGGAACTGGGCGTACGTCAACCAAATTGTGAAGCAGACTTGTCCGAGGAGAAGCGCACTCTGAGATTTGATGAAATTCCAAAGTTCGAGACCTATGAAAATATTCGAGATATTCGCGTTTTCGACTTTGTGATGACGAATCCAGTCTTGGACTTTCTGGACAAACCTGTTCTTTTAATGCGGCGTGTTAGAGTTTCTCGAGACGACATTCTGAGTTTGAAGCAGGTTAGTTTGAGTTGGTTATTTCCGAATTTTTACGTGACGAATTTTTGGTGCATTGACGCGCTTTTTGTGCCTTGGAACATTTTCGGTGCATTGACGCATGTTTGTTGCATTGGCGTTTTTTGTTTCGGTTCAGTTTTCCTTGCCTGGACGCATTTTTTGTGCTTTTATGCGTTTCCGGTGACTTGACGCATTTTTGGTGCATAGACGCAATTTCAGTGTCTTGACGCATTTTTGGATCTTTGACGCTTTTTTGGTKCACTGACGTATTTTTGGTGCCTTGACGCTTTTTTTGAGCTTTGATGCATTTTTTATGCGTTGACGTATTTTTGAGATATATTTTTGAGAGGCACGTTTACAGTATTTTTGAATTTTTTCTTCGTTTTTTTCCGGTGATTGTATCTGACTTCTAGGTGATCCTATATGGTTCCATATACTTGGATATACTAACAGTTTTTCCTATTATTTTCCATATACTAACAGTTTTTCCTATTATTTTCGAAACTTTTTGTTTTCATCTATTTTTCCACAATTTTCAAAGGATAGTAATCCATTGAAGATTCTAGACAAACCGCATATTTTTGATTTTGCTCAAACTATTGTCATTGGTTCTTTTGGGCACGCTGATTACAAAGCTGAAGTCAGTTTTTCCACCCCGGCCTTGTGAAAAAATTTATGAGCTATAAAAGTGACTACAGTACTAATTTCTCATTTTTGGAGTGAGTTTCTGAAGGAGTTATTGACTTTTTTGGCTATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGTTTCGGTTCAGTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATACTGTAAACGTGCCTCTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGTTTCGGTTCAGTTTTCCTTGCCTGGACGCATTTTTTGTGCTTTTATGCGTTTCCGGTGACTTGACGCATTTTTGGTGCATAGACGCAATTTCAGTGTCTTGACGCATTTTTGGATCTTTGACGCTTTTTTGGTTCACTGACGTATTTTTGGTGCCTTGACGCTTTTTTTGAGCTTTGATGCATTTTTTATGCGTTGACGTATTTTTGAGATATATTTTTGAGAGGCACGTTTACAGTATTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGTTTCGGTTCAGTTTTCCTTGCCTGGACGCATTTTTTGTGCTTTTATGCGTTTCCGGTGACTTGACGCATTTTTGGTGCATAGACGCAATTTCAGTGTCTTGACGCATTTTTGGATCTTTGACGCTTTTTTGGTKCACTGACGTATTTTTGGTGCCTTGACGCTTTTTTTGAGCTTTGATGCATTTTTTATGCGTTGACGTATTTTTGAGATATATTTTTGAGAGGCACGTTTACAGTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36003</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>1257</contig_pos>
        <strand>+</strand>
        <context>GATTGCAACA[A/G]TTGCCACGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCGAACTTCTAAATACAACCAAACATACAGTATACAGGTGATTGCAACA</left_flank>
        <right_flank>TTGCCACGTTGTTAACAGCATGAGAGATGTTGATGTACTAAAAAATTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATTTTTCTTTAGAACATTATTATTACGCATTTCCGTGCATCACAACTTTTTTATTGTAGTTTGTGCTCTCTTTTATGCCAAAAAGACATTTTTATTCAAGATTGCGGACTAACAGTAGTCGAATGCGGAATGTGGTAAACCTTCTTAATTTCCTGGAAAAGTTTGATGAATCCTTTTCTGATAGTTCTATTCAGAGTCAAATAAATGAAAACTGGTGCTCCGTGAATCAATTGCCACATCTTTTGAGCCACTATTATGATCCAAATAGGAAGTTCAACGATGTTCATGACAACGAAAATGATGGAAGCGACAAAGTTGATTGAGCAAATCATAGCAGACTGAACCAGAATTTGAAAGCCCTGGAGTCATACTGTAGAAGGACTTAATAAGAATCCTGACCTACCAAATCATTCTTCCGATCCTTCCAACCAATTGCTTTTAATTTCTCTCGAACTTCTAAATACAACCAAACATACAGTATACAGGTGATTGCAACAATTGCCACGTTGTTAACAGCATGAGAGATGTTGATGTACTAAAAAATTATTCTGATATAATCATTGATAATTACAGTACCTTATCAGTTTTAATGTCACTGATCATCGGGTTGAATAGCCATGTGTAGTACTTTGAGTTGAAGCCAACTGGATTAGTGAACACAGCGAAATAGAGGCCATAGAGAAATGGGGCAAGCATGATGAGAAATGGGCGATTTCTGAAATCGCATCGACTATTATCCTTGGGATTTAAACTACAAGCTTCAAACGTAAAACCTATTCTTATGCCTTGAAGTCTTAAGCTTTCAGTTGCTTCAAGAATGTCTTACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTGTACCTTATATTTTA</canonical>
            <polymorphic>TTATTTTTCTTTAGAACATTATTATTACGCATTTCCGTGCATCACAACTTTTTTATTGTAGTTTGTGCTCTCTTTTATGCCAAAAAGACATTTTTATTCAAGATTGCGGACTAACAGTAGTCGAATGCGGAATGTGGTAAACCTTCTTAATTTCCTGGAAAAGTTTGATGAATCCTTTTCTGATAGTTCTATTCAGAGTCAAATAAATGAAAACTGGTGCTCCGTGAATCAATTGCCACATCTTTTGAGCCACTATTATGATCCAAATAGGAAGTTCAACGATGTTCATGACAACGAAAATGATGGAAGCGACAAAGTTGATTGAGCAAATCATAGCAGACTGAACCAGAATTTGAAAGCCCTGGAGTCATACTGTAGAAGGACTTAATAAGAATCCTGACCTACCAAATCATTCTTCCGATCCTTCCAACCAATTGCTTTTAATTTCTCTCGAACTTCTAAATACAACCAAACATACAGTATACAGGTGATTGCAACARTTGCCACGTTGTTAACAGCATGAGAGATGTTGATGTACTAAAAAATTATTCTGATATAATCATTGATAATTACAGTACCTTATCAGTTTTAATGTCACTGATCATCGGGTTGAATAGCCATGTGTAGTACTTTGAGTTGAAGCCAACTGGATTAGTGAACACAGCGAAATAGAGGCCATAGAGAAATGGGGCAAGCATGATGAGAAATGGGCGATTTCTGAAATCGCATCGACTATTATCCTTGGGATTTAAACTACAAGCTTCAAACGTAAAACCTATTCTTATGCCTTGAAGTCTTAAGCTTTCAGTTGCTTCAAGAATGTCTTACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTGTACCTTATATTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>502 230 202 66</canonical_bands>
                <polymorphic_bands>568 230 202</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>433 148 119 83 82 56 45 24 10</canonical_bands>
                <polymorphic_bands>433 148 119 101 83 82 24 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAGAATCCTGACCTACCAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCAAAGTACTACACATGGCTATTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATAAGAATCCTGACCTACCAAATCATTCTTCCGATCCTTCCAACCAATTGCTTTTAATTTCTCTCGAACTTCTAAATACAACCAAACATACAGTATACAGGTGATTGCAACAATTGCCACGTTGTTAACAGCATGAGAGATGTTGATGTACTAAAAAATTATTCTGATATAATCATTGATAATTACAGTACCTTATCAGTTTTAATGTCACTGATCATCGGGTTGAATAGCCATGTGTAGTACTTTGA</canonical_amplicon>
		<polymorphic_amplicon>ATAAGAATCCTGACCTACCAAATCATTCTTCCGATCCTTCCAACCAATTGCTTTTAATTTCTCTCGAACTTCTAAATACAACCAAACATACAGTATACAGGTGATTGCAACARTTGCCACGTTGTTAACAGCATGAGAGATGTTGATGTACTAAAAAATTATTCTGATATAATCATTGATAATTACAGTACCTTATCAGTTTTAATGTCACTGATCATCGGGTTGAATAGCCATGTGTAGTACTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36004</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>1303</contig_pos>
        <strand>+</strand>
        <context>TACTAAAAAA[G/T]TATTCTGATA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACAATTGCCACGTTGTTAACAGCATGAGAGATGTTGATGTACTAAAAAA</left_flank>
        <right_flank>TATTCTGATATAATCATTGATAATTACAGTACCTTATCAGTTTTAATGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTTTTTATTGTAGTTTGTGCTCTCTTTTATGCCAAAAAGACATTTTTATTCAAGATTGCGGACTAACAGTAGTCGAATGCGGAATGTGGTAAACCTTCTTAATTTCCTGGAAAAGTTTGATGAATCCTTTTCTGATAGTTCTATTCAGAGTCAAATAAATGAAAACTGGTGCTCCGTGAATCAATTGCCACATCTTTTGAGCCACTATTATGATCCAAATAGGAAGTTCAACGATGTTCATGACAACGAAAATGATGGAAGCGACAAAGTTGATTGAGCAAATCATAGCAGACTGAACCAGAATTTGAAAGCCCTGGAGTCATACTGTAGAAGGACTTAATAAGAATCCTGACCTACCAAATCATTCTTCCGATCCTTCCAACCAATTGCTTTTAATTTCTCTCGAACTTCTAAATACAACCAAACATACAGTATACAGGTGATTGCAACAATTGCCACGTTGTTAACAGCATGAGAGATGTTGATGTACTAAAAAATTATTCTGATATAATCATTGATAATTACAGTACCTTATCAGTTTTAATGTCACTGATCATCGGGTTGAATAGCCATGTGTAGTACTTTGAGTTGAAGCCAACTGGATTAGTGAACACAGCGAAATAGAGGCCATAGAGAAATGGGGCAAGCATGATGAGAAATGGGCGATTTCTGAAATCGCATCGACTATTATCCTTGGGATTTAAACTACAAGCTTCAAACGTAAAACCTATTCTTATGCCTTGAAGTCTTAAGCTTTCAGTTGCTTCAAGAATGTCTTACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTGTACCTTATATTTTATACCTTAAACATTTGGATCCTTAGAACCTTAGAATTCTTAGATCCT</canonical>
            <polymorphic>ACTTTTTTATTGTAGTTTGTGCTCTCTTTTATGCCAAAAAGACATTTTTATTCAAGATTGCGGACTAACAGTAGTCGAATGCGGAATGTGGTAAACCTTCTTAATTTCCTGGAAAAGTTTGATGAATCCTTTTCTGATAGTTCTATTCAGAGTCAAATAAATGAAAACTGGTGCTCCGTGAATCAATTGCCACATCTTTTGAGCCACTATTATGATCCAAATAGGAAGTTCAACGATGTTCATGACAACGAAAATGATGGAAGCGACAAAGTTGATTGAGCAAATCATAGCAGACTGAACCAGAATTTGAAAGCCCTGGAGTCATACTGTAGAAGGACTTAATAAGAATCCTGACCTACCAAATCATTCTTCCGATCCTTCCAACCAATTGCTTTTAATTTCTCTCGAACTTCTAAATACAACCAAACATACAGTATACAGGTGATTGCAACAATTGCCACGTTGTTAACAGCATGAGAGATGTTGATGTACTAAAAAAKTATTCTGATATAATCATTGATAATTACAGTACCTTATCAGTTTTAATGTCACTGATCATCGGGTTGAATAGCCATGTGTAGTACTTTGAGTTGAAGCCAACTGGATTAGTGAACACAGCGAAATAGAGGCCATAGAGAAATGGGGCAAGCATGATGAGAAATGGGCGATTTCTGAAATCGCATCGACTATTATCCTTGGGATTTAAACTACAAGCTTCAAACGTAAAACCTATTCTTATGCCTTGAAGTCTTAAGCTTTCAGTTGCTTCAAGAATGTCTTACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTGTACCTTATATTTTATACCTTAAACATTTGGATCCTTAGAACCTTAGAATTCTTAGATCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>465 119 102 83 82 56 45 24 14 10</canonical_bands>
                <polymorphic_bands>465 119 102 83 82 69 56 14 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAGAATCCTGACCTACCAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCAAAGTACTACACATGGCTATTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATAAGAATCCTGACCTACCAAATCATTCTTCCGATCCTTCCAACCAATTGCTTTTAATTTCTCTCGAACTTCTAAATACAACCAAACATACAGTATACAGGTGATTGCAACAATTGCCACGTTGTTAACAGCATGAGAGATGTTGATGTACTAAAAAATTATTCTGATATAATCATTGATAATTACAGTACCTTATCAGTTTTAATGTCACTGATCATCGGGTTGAATAGCCATGTGTAGTACTTTGA</canonical_amplicon>
		<polymorphic_amplicon>ATAAGAATCCTGACCTACCAAATCATTCTTCCGATCCTTCCAACCAATTGCTTTTAATTTCTCTCGAACTTCTAAATACAACCAAACATACAGTATACAGGTGATTGCAACAATTGCCACGTTGTTAACAGCATGAGAGATGTTGATGTACTAAAAAAKTATTCTGATATAATCATTGATAATTACAGTACCTTATCAGTTTTAATGTCACTGATCATCGGGTTGAATAGCCATGTGTAGTACTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36005</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>1438</contig_pos>
        <strand>+</strand>
        <context>AGAGGCCATA[C/G]AGAAATGGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTGAGTTGAAGCCAACTGGATTAGTGAACACAGCGAAATAGAGGCCATA</left_flank>
        <right_flank>AGAAATGGGGCAAGCATGATGAGAAATGGGCGATTTCTGAAATCGCATCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAGTTCTATTCAGAGTCAAATAAATGAAAACTGGTGCTCCGTGAATCAATTGCCACATCTTTTGAGCCACTATTATGATCCAAATAGGAAGTTCAACGATGTTCATGACAACGAAAATGATGGAAGCGACAAAGTTGATTGAGCAAATCATAGCAGACTGAACCAGAATTTGAAAGCCCTGGAGTCATACTGTAGAAGGACTTAATAAGAATCCTGACCTACCAAATCATTCTTCCGATCCTTCCAACCAATTGCTTTTAATTTCTCTCGAACTTCTAAATACAACCAAACATACAGTATACAGGTGATTGCAACAATTGCCACGTTGTTAACAGCATGAGAGATGTTGATGTACTAAAAAATTATTCTGATATAATCATTGATAATTACAGTACCTTATCAGTTTTAATGTCACTGATCATCGGGTTGAATAGCCATGTGTAGTACTTTGAGTTGAAGCCAACTGGATTAGTGAACACAGCGAAATAGAGGCCATAGAGAAATGGGGCAAGCATGATGAGAAATGGGCGATTTCTGAAATCGCATCGACTATTATCCTTGGGATTTAAACTACAAGCTTCAAACGTAAAACCTATTCTTATGCCTTGAAGTCTTAAGCTTTCAGTTGCTTCAAGAATGTCTTACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTGTACCTTATATTTTATACCTTAAACATTTGGATCCTTAGAACCTTAGAATTCTTAGATCCTTTAAAACTAACCCTGTAAACATCTTGCTCAACTTATGCTCACTCAGCTCCAACAACCGATTGCTGACCAAAATCAACACAATTATACAAGAAGAACACCAAAGACCCAAAACGATCATTCCAACGATATAATTAA</canonical>
            <polymorphic>GATAGTTCTATTCAGAGTCAAATAAATGAAAACTGGTGCTCCGTGAATCAATTGCCACATCTTTTGAGCCACTATTATGATCCAAATAGGAAGTTCAACGATGTTCATGACAACGAAAATGATGGAAGCGACAAAGTTGATTGAGCAAATCATAGCAGACTGAACCAGAATTTGAAAGCCCTGGAGTCATACTGTAGAAGGACTTAATAAGAATCCTGACCTACCAAATCATTCTTCCGATCCTTCCAACCAATTGCTTTTAATTTCTCTCGAACTTCTAAATACAACCAAACATACAGTATACAGGTGATTGCAACAATTGCCACGTTGTTAACAGCATGAGAGATGTTGATGTACTAAAAAATTATTCTGATATAATCATTGATAATTACAGTACCTTATCAGTTTTAATGTCACTGATCATCGGGTTGAATAGCCATGTGTAGTACTTTGAGTTGAAGCCAACTGGATTAGTGAACACAGCGAAATAGAGGCCATASAGAAATGGGGCAAGCATGATGAGAAATGGGCGATTTCTGAAATCGCATCGACTATTATCCTTGGGATTTAAACTACAAGCTTCAAACGTAAAACCTATTCTTATGCCTTGAAGTCTTAAGCTTTCAGTTGCTTCAAGAATGTCTTACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTGTACCTTATATTTTATACCTTAAACATTTGGATCCTTAGAACCTTAGAATTCTTAGATCCTTTAAAACTAACCCTGTAAACATCTTGCTCAACTTATGCTCACTCAGCTCCAACAACCGATTGCTGACCAAAATCAACACAATTATACAAGAAGAACACCAAAGACCCAAAACGATCATTCCAACGATATAATTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTTATCAGTTTTAATGTCACTG</pcr_primer_p1>
		<pcr_primer_p2>AGACATTCTTGAAGCAACTGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACCTTATCAGTTTTAATGTCACTGATCATCGGGTTGAATAGCCATGTGTAGTACTTTGAGTTGAAGCCAACTGGATTAGTGAACACAGCGAAATAGAGGCCATAGAGAAATGGGGCAAGCATGATGAGAAATGGGCGATTTCTGAAATCGCATCGACTATTATCCTTGGGATTTAAACTACAAGCTTCAAACGTAAAACCTATTCTTATGCCTTGAAGTCTTAAGCTTTCAGTTGCTTCAAGAATGTCT</canonical_amplicon>
		<polymorphic_amplicon>ACCTTATCAGTTTTAATGTCACTGATCATCGGGTTGAATAGCCATGTGTAGTACTTTGAGTTGAAGCCAACTGGATTAGTGAACACAGCGAAATAGAGGCCATASAGAAATGGGGCAAGCATGATGAGAAATGGGCGATTTCTGAAATCGCATCGACTATTATCCTTGGGATTTAAACTACAAGCTTCAAACGTAAAACCTATTCTTATGCCTTGAAGTCTTAAGCTTTCAGTTGCTTCAAGAATGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36006</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>1484</contig_pos>
        <strand>+</strand>
        <context>TCTGAAATCG[C/T]ATCGACTATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATAGAGAAATGGGGCAAGCATGATGAGAAATGGGCGATTTCTGAAATCG</left_flank>
        <right_flank>ATCGACTATTATCCTTGGGATTTAAACTACAAGCTTCAAACGTAAAACCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAATTGCCACATCTTTTGAGCCACTATTATGATCCAAATAGGAAGTTCAACGATGTTCATGACAACGAAAATGATGGAAGCGACAAAGTTGATTGAGCAAATCATAGCAGACTGAACCAGAATTTGAAAGCCCTGGAGTCATACTGTAGAAGGACTTAATAAGAATCCTGACCTACCAAATCATTCTTCCGATCCTTCCAACCAATTGCTTTTAATTTCTCTCGAACTTCTAAATACAACCAAACATACAGTATACAGGTGATTGCAACAATTGCCACGTTGTTAACAGCATGAGAGATGTTGATGTACTAAAAAATTATTCTGATATAATCATTGATAATTACAGTACCTTATCAGTTTTAATGTCACTGATCATCGGGTTGAATAGCCATGTGTAGTACTTTGAGTTGAAGCCAACTGGATTAGTGAACACAGCGAAATAGAGGCCATAGAGAAATGGGGCAAGCATGATGAGAAATGGGCGATTTCTGAAATCGCATCGACTATTATCCTTGGGATTTAAACTACAAGCTTCAAACGTAAAACCTATTCTTATGCCTTGAAGTCTTAAGCTTTCAGTTGCTTCAAGAATGTCTTACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTGTACCTTATATTTTATACCTTAAACATTTGGATCCTTAGAACCTTAGAATTCTTAGATCCTTTAAAACTAACCCTGTAAACATCTTGCTCAACTTATGCTCACTCAGCTCCAACAACCGATTGCTGACCAAAATCAACACAATTATACAAGAAGAACACCAAAGACCCAAAACGATCATTCCAACGATATAATTAAACTTTGGACACGTACACCATACGGCTCCTCGGATAGCTAGGATACC</canonical>
            <polymorphic>ATCAATTGCCACATCTTTTGAGCCACTATTATGATCCAAATAGGAAGTTCAACGATGTTCATGACAACGAAAATGATGGAAGCGACAAAGTTGATTGAGCAAATCATAGCAGACTGAACCAGAATTTGAAAGCCCTGGAGTCATACTGTAGAAGGACTTAATAAGAATCCTGACCTACCAAATCATTCTTCCGATCCTTCCAACCAATTGCTTTTAATTTCTCTCGAACTTCTAAATACAACCAAACATACAGTATACAGGTGATTGCAACAATTGCCACGTTGTTAACAGCATGAGAGATGTTGATGTACTAAAAAATTATTCTGATATAATCATTGATAATTACAGTACCTTATCAGTTTTAATGTCACTGATCATCGGGTTGAATAGCCATGTGTAGTACTTTGAGTTGAAGCCAACTGGATTAGTGAACACAGCGAAATAGAGGCCATAGAGAAATGGGGCAAGCATGATGAGAAATGGGCGATTTCTGAAATCGYATCGACTATTATCCTTGGGATTTAAACTACAAGCTTCAAACGTAAAACCTATTCTTATGCCTTGAAGTCTTAAGCTTTCAGTTGCTTCAAGAATGTCTTACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTGTACCTTATATTTTATACCTTAAACATTTGGATCCTTAGAACCTTAGAATTCTTAGATCCTTTAAAACTAACCCTGTAAACATCTTGCTCAACTTATGCTCACTCAGCTCCAACAACCGATTGCTGACCAAAATCAACACAATTATACAAGAAGAACACCAAAGACCCAAAACGATCATTCCAACGATATAATTAAACTTTGGACACGTACACCATACGGCTCCTCGGATAGCTAGGATACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTTATCAGTTTTAATGTCACTG</pcr_primer_p1>
		<pcr_primer_p2>AGACATTCTTGAAGCAACTGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACCTTATCAGTTTTAATGTCACTGATCATCGGGTTGAATAGCCATGTGTAGTACTTTGAGTTGAAGCCAACTGGATTAGTGAACACAGCGAAATAGAGGCCATAGAGAAATGGGGCAAGCATGATGAGAAATGGGCGATTTCTGAAATCGCATCGACTATTATCCTTGGGATTTAAACTACAAGCTTCAAACGTAAAACCTATTCTTATGCCTTGAAGTCTTAAGCTTTCAGTTGCTTCAAGAATGTCT</canonical_amplicon>
		<polymorphic_amplicon>ACCTTATCAGTTTTAATGTCACTGATCATCGGGTTGAATAGCCATGTGTAGTACTTTGAGTTGAAGCCAACTGGATTAGTGAACACAGCGAAATAGAGGCCATAGAGAAATGGGGCAAGCATGATGAGAAATGGGCGATTTCTGAAATCGYATCGACTATTATCCTTGGGATTTAAACTACAAGCTTCAAACGTAAAACCTATTCTTATGCCTTGAAGTCTTAAGCTTTCAGTTGCTTCAAGAATGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36007</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>1504</contig_pos>
        <strand>+</strand>
        <context>TATCCTTGGG[A/T]WTTAAACTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGATGAGAAATGGGCGATTTCTGAAATCGCATCGACTATTATCCTTGGG</left_flank>
        <right_flank>TTTAAACTACAAGCTTCAAACGTAAAACCTATTCTTATGCCTTGAAGTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCACTATTATGATCCAAATAGGAAGTTCAACGATGTTCATGACAACGAAAATGATGGAAGCGACAAAGTTGATTGAGCAAATCATAGCAGACTGAACCAGAATTTGAAAGCCCTGGAGTCATACTGTAGAAGGACTTAATAAGAATCCTGACCTACCAAATCATTCTTCCGATCCTTCCAACCAATTGCTTTTAATTTCTCTCGAACTTCTAAATACAACCAAACATACAGTATACAGGTGATTGCAACAATTGCCACGTTGTTAACAGCATGAGAGATGTTGATGTACTAAAAAATTATTCTGATATAATCATTGATAATTACAGTACCTTATCAGTTTTAATGTCACTGATCATCGGGTTGAATAGCCATGTGTAGTACTTTGAGTTGAAGCCAACTGGATTAGTGAACACAGCGAAATAGAGGCCATAGAGAAATGGGGCAAGCATGATGAGAAATGGGCGATTTCTGAAATCGCATCGACTATTATCCTTGGGATTTAAACTACAAGCTTCAAACGTAAAACCTATTCTTATGCCTTGAAGTCTTAAGCTTTCAGTTGCTTCAAGAATGTCTTACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTGTACCTTATATTTTATACCTTAAACATTTGGATCCTTAGAACCTTAGAATTCTTAGATCCTTTAAAACTAACCCTGTAAACATCTTGCTCAACTTATGCTCACTCAGCTCCAACAACCGATTGCTGACCAAAATCAACACAATTATACAAGAAGAACACCAAAGACCCAAAACGATCATTCCAACGATATAATTAAACTTTGGACACGTACACCATACGGCTCCTCGGATAGCTAGGATACCAGTGATTATGGAATTGATAA</canonical>
            <polymorphic>AGCCACTATTATGATCCAAATAGGAAGTTCAACGATGTTCATGACAACGAAAATGATGGAAGCGACAAAGTTGATTGAGCAAATCATAGCAGACTGAACCAGAATTTGAAAGCCCTGGAGTCATACTGTAGAAGGACTTAATAAGAATCCTGACCTACCAAATCATTCTTCCGATCCTTCCAACCAATTGCTTTTAATTTCTCTCGAACTTCTAAATACAACCAAACATACAGTATACAGGTGATTGCAACAATTGCCACGTTGTTAACAGCATGAGAGATGTTGATGTACTAAAAAATTATTCTGATATAATCATTGATAATTACAGTACCTTATCAGTTTTAATGTCACTGATCATCGGGTTGAATAGCCATGTGTAGTACTTTGAGTTGAAGCCAACTGGATTAGTGAACACAGCGAAATAGAGGCCATAGAGAAATGGGGCAAGCATGATGAGAAATGGGCGATTTCTGAAATCGCATCGACTATTATCCTTGGGWTTTAAACTACAAGCTTCAAACGTAAAACCTATTCTTATGCCTTGAAGTCTTAAGCTTTCAGTTGCTTCAAGAATGTCTTACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTGTACCTTATATTTTATACCTTAAACATTTGGATCCTTAGAACCTTAGAATTCTTAGATCCTTTAAAACTAACCCTGTAAACATCTTGCTCAACTTATGCTCACTCAGCTCCAACAACCGATTGCTGACCAAAATCAACACAATTATACAAGAAGAACACCAAAGACCCAAAACGATCATTCCAACGATATAATTAAACTTTGGACACGTACACCATACGGCTCCTCGGATAGCTAGGATACCAGTGATTATGGAATTGATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTTATCAGTTTTAATGTCACTG</pcr_primer_p1>
		<pcr_primer_p2>AGACATTCTTGAAGCAACTGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACCTTATCAGTTTTAATGTCACTGATCATCGGGTTGAATAGCCATGTGTAGTACTTTGAGTTGAAGCCAACTGGATTAGTGAACACAGCGAAATAGAGGCCATAGAGAAATGGGGCAAGCATGATGAGAAATGGGCGATTTCTGAAATCGCATCGACTATTATCCTTGGGATTTAAACTACAAGCTTCAAACGTAAAACCTATTCTTATGCCTTGAAGTCTTAAGCTTTCAGTTGCTTCAAGAATGTCT</canonical_amplicon>
		<polymorphic_amplicon>ACCTTATCAGTTTTAATGTCACTGATCATCGGGTTGAATAGCCATGTGTAGTACTTTGAGTTGAAGCCAACTGGATTAGTGAACACAGCGAAATAGAGGCCATAGAGAAATGGGGCAAGCATGATGAGAAATGGGCGATTTCTGAAATCGCATCGACTATTATCCTTGGGWTTTAAACTACAAGCTTCAAACGTAAAACCTATTCTTATGCCTTGAAGTCTTAAGCTTTCAGTTGCTTCAAGAATGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36008</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>1505</contig_pos>
        <strand>+</strand>
        <context>ATCCTTGGGW[A/T]TTAAACTACA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGATGAGAAATGGGCGATTTCTGAAATCGCATCGACTATTATCCTTGGGA</left_flank>
        <right_flank>TTAAACTACAAGCTTCAAACGTAAAACCTATTCTTATGCCTTGAAGTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCACTATTATGATCCAAATAGGAAGTTCAACGATGTTCATGACAACGAAAATGATGGAAGCGACAAAGTTGATTGAGCAAATCATAGCAGACTGAACCAGAATTTGAAAGCCCTGGAGTCATACTGTAGAAGGACTTAATAAGAATCCTGACCTACCAAATCATTCTTCCGATCCTTCCAACCAATTGCTTTTAATTTCTCTCGAACTTCTAAATACAACCAAACATACAGTATACAGGTGATTGCAACAATTGCCACGTTGTTAACAGCATGAGAGATGTTGATGTACTAAAAAATTATTCTGATATAATCATTGATAATTACAGTACCTTATCAGTTTTAATGTCACTGATCATCGGGTTGAATAGCCATGTGTAGTACTTTGAGTTGAAGCCAACTGGATTAGTGAACACAGCGAAATAGAGGCCATAGAGAAATGGGGCAAGCATGATGAGAAATGGGCGATTTCTGAAATCGCATCGACTATTATCCTTGGGATTTAAACTACAAGCTTCAAACGTAAAACCTATTCTTATGCCTTGAAGTCTTAAGCTTTCAGTTGCTTCAAGAATGTCTTACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTGTACCTTATATTTTATACCTTAAACATTTGGATCCTTAGAACCTTAGAATTCTTAGATCCTTTAAAACTAACCCTGTAAACATCTTGCTCAACTTATGCTCACTCAGCTCCAACAACCGATTGCTGACCAAAATCAACACAATTATACAAGAAGAACACCAAAGACCCAAAACGATCATTCCAACGATATAATTAAACTTTGGACACGTACACCATACGGCTCCTCGGATAGCTAGGATACCAGTGATTATGGAATTGATAAC</canonical>
            <polymorphic>GCCACTATTATGATCCAAATAGGAAGTTCAACGATGTTCATGACAACGAAAATGATGGAAGCGACAAAGTTGATTGAGCAAATCATAGCAGACTGAACCAGAATTTGAAAGCCCTGGAGTCATACTGTAGAAGGACTTAATAAGAATCCTGACCTACCAAATCATTCTTCCGATCCTTCCAACCAATTGCTTTTAATTTCTCTCGAACTTCTAAATACAACCAAACATACAGTATACAGGTGATTGCAACAATTGCCACGTTGTTAACAGCATGAGAGATGTTGATGTACTAAAAAATTATTCTGATATAATCATTGATAATTACAGTACCTTATCAGTTTTAATGTCACTGATCATCGGGTTGAATAGCCATGTGTAGTACTTTGAGTTGAAGCCAACTGGATTAGTGAACACAGCGAAATAGAGGCCATAGAGAAATGGGGCAAGCATGATGAGAAATGGGCGATTTCTGAAATCGCATCGACTATTATCCTTGGGAWTTAAACTACAAGCTTCAAACGTAAAACCTATTCTTATGCCTTGAAGTCTTAAGCTTTCAGTTGCTTCAAGAATGTCTTACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTGTACCTTATATTTTATACCTTAAACATTTGGATCCTTAGAACCTTAGAATTCTTAGATCCTTTAAAACTAACCCTGTAAACATCTTGCTCAACTTATGCTCACTCAGCTCCAACAACCGATTGCTGACCAAAATCAACACAATTATACAAGAAGAACACCAAAGACCCAAAACGATCATTCCAACGATATAATTAAACTTTGGACACGTACACCATACGGCTCCTCGGATAGCTAGGATACCAGTGATTATGGAATTGATAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 298 200</canonical_bands>
                <polymorphic_bands>800 200</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCTTATCAGTTTTAATGTCACTG</pcr_primer_p1>
		<pcr_primer_p2>AGACATTCTTGAAGCAACTGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACCTTATCAGTTTTAATGTCACTGATCATCGGGTTGAATAGCCATGTGTAGTACTTTGAGTTGAAGCCAACTGGATTAGTGAACACAGCGAAATAGAGGCCATAGAGAAATGGGGCAAGCATGATGAGAAATGGGCGATTTCTGAAATCGCATCGACTATTATCCTTGGGATTTAAACTACAAGCTTCAAACGTAAAACCTATTCTTATGCCTTGAAGTCTTAAGCTTTCAGTTGCTTCAAGAATGTCT</canonical_amplicon>
		<polymorphic_amplicon>ACCTTATCAGTTTTAATGTCACTGATCATCGGGTTGAATAGCCATGTGTAGTACTTTGAGTTGAAGCCAACTGGATTAGTGAACACAGCGAAATAGAGGCCATAGAGAAATGGGGCAAGCATGATGAGAAATGGGCGATTTCTGAAATCGCATCGACTATTATCCTTGGGAWTTAAACTACAAGCTTCAAACGTAAAACCTATTCTTATGCCTTGAAGTCTTAAGCTTTCAGTTGCTTCAAGAATGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36009</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>1528</contig_pos>
        <strand>+</strand>
        <context>CTTCAAACGT[A/G]AAACCTATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATCGCATCGACTATTATCCTTGGGATTTAAACTACAAGCTTCAAACGT</left_flank>
        <right_flank>AAACCTATTCTTATGCCTTGAAGTCTTAAGCTTTCAGTTGCTTCAAGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTCAACGATGTTCATGACAACGAAAATGATGGAAGCGACAAAGTTGATTGAGCAAATCATAGCAGACTGAACCAGAATTTGAAAGCCCTGGAGTCATACTGTAGAAGGACTTAATAAGAATCCTGACCTACCAAATCATTCTTCCGATCCTTCCAACCAATTGCTTTTAATTTCTCTCGAACTTCTAAATACAACCAAACATACAGTATACAGGTGATTGCAACAATTGCCACGTTGTTAACAGCATGAGAGATGTTGATGTACTAAAAAATTATTCTGATATAATCATTGATAATTACAGTACCTTATCAGTTTTAATGTCACTGATCATCGGGTTGAATAGCCATGTGTAGTACTTTGAGTTGAAGCCAACTGGATTAGTGAACACAGCGAAATAGAGGCCATAGAGAAATGGGGCAAGCATGATGAGAAATGGGCGATTTCTGAAATCGCATCGACTATTATCCTTGGGATTTAAACTACAAGCTTCAAACGTAAAACCTATTCTTATGCCTTGAAGTCTTAAGCTTTCAGTTGCTTCAAGAATGTCTTACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTGTACCTTATATTTTATACCTTAAACATTTGGATCCTTAGAACCTTAGAATTCTTAGATCCTTTAAAACTAACCCTGTAAACATCTTGCTCAACTTATGCTCACTCAGCTCCAACAACCGATTGCTGACCAAAATCAACACAATTATACAAGAAGAACACCAAAGACCCAAAACGATCATTCCAACGATATAATTAAACTTTGGACACGTACACCATACGGCTCCTCGGATAGCTAGGATACCAGTGATTATGGAATTGATAACCAGCGCCGACATATCAACAATCG</canonical>
            <polymorphic>AAGTTCAACGATGTTCATGACAACGAAAATGATGGAAGCGACAAAGTTGATTGAGCAAATCATAGCAGACTGAACCAGAATTTGAAAGCCCTGGAGTCATACTGTAGAAGGACTTAATAAGAATCCTGACCTACCAAATCATTCTTCCGATCCTTCCAACCAATTGCTTTTAATTTCTCTCGAACTTCTAAATACAACCAAACATACAGTATACAGGTGATTGCAACAATTGCCACGTTGTTAACAGCATGAGAGATGTTGATGTACTAAAAAATTATTCTGATATAATCATTGATAATTACAGTACCTTATCAGTTTTAATGTCACTGATCATCGGGTTGAATAGCCATGTGTAGTACTTTGAGTTGAAGCCAACTGGATTAGTGAACACAGCGAAATAGAGGCCATAGAGAAATGGGGCAAGCATGATGAGAAATGGGCGATTTCTGAAATCGCATCGACTATTATCCTTGGGATTTAAACTACAAGCTTCAAACGTRAAACCTATTCTTATGCCTTGAAGTCTTAAGCTTTCAGTTGCTTCAAGAATGTCTTACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTGTACCTTATATTTTATACCTTAAACATTTGGATCCTTAGAACCTTAGAATTCTTAGATCCTTTAAAACTAACCCTGTAAACATCTTGCTCAACTTATGCTCACTCAGCTCCAACAACCGATTGCTGACCAAAATCAACACAATTATACAAGAAGAACACCAAAGACCCAAAACGATCATTCCAACGATATAATTAAACTTTGGACACGTACACCATACGGCTCCTCGGATAGCTAGGATACCAGTGATTATGGAATTGATAACCAGCGCCGACATATCAACAATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTTATCAGTTTTAATGTCACTG</pcr_primer_p1>
		<pcr_primer_p2>AGACATTCTTGAAGCAACTGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACCTTATCAGTTTTAATGTCACTGATCATCGGGTTGAATAGCCATGTGTAGTACTTTGAGTTGAAGCCAACTGGATTAGTGAACACAGCGAAATAGAGGCCATAGAGAAATGGGGCAAGCATGATGAGAAATGGGCGATTTCTGAAATCGCATCGACTATTATCCTTGGGATTTAAACTACAAGCTTCAAACGTAAAACCTATTCTTATGCCTTGAAGTCTTAAGCTTTCAGTTGCTTCAAGAATGTCT</canonical_amplicon>
		<polymorphic_amplicon>ACCTTATCAGTTTTAATGTCACTGATCATCGGGTTGAATAGCCATGTGTAGTACTTTGAGTTGAAGCCAACTGGATTAGTGAACACAGCGAAATAGAGGCCATAGAGAAATGGGGCAAGCATGATGAGAAATGGGCGATTTCTGAAATCGCATCGACTATTATCCTTGGGATTTAAACTACAAGCTTCAAACGTRAAACCTATTCTTATGCCTTGAAGTCTTAAGCTTTCAGTTGCTTCAAGAATGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36010</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>1542</contig_pos>
        <strand>+</strand>
        <context>CCTATTCTTA[A/T]GCCTTGAAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTATCCTTGGGATTTAAACTACAAGCTTCAAACGTAAAACCTATTCTTA</left_flank>
        <right_flank>GCCTTGAAGTCTTAAGCTTTCAGTTGCTTCAAGAATGTCTTACCTTATAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATGACAACGAAAATGATGGAAGCGACAAAGTTGATTGAGCAAATCATAGCAGACTGAACCAGAATTTGAAAGCCCTGGAGTCATACTGTAGAAGGACTTAATAAGAATCCTGACCTACCAAATCATTCTTCCGATCCTTCCAACCAATTGCTTTTAATTTCTCTCGAACTTCTAAATACAACCAAACATACAGTATACAGGTGATTGCAACAATTGCCACGTTGTTAACAGCATGAGAGATGTTGATGTACTAAAAAATTATTCTGATATAATCATTGATAATTACAGTACCTTATCAGTTTTAATGTCACTGATCATCGGGTTGAATAGCCATGTGTAGTACTTTGAGTTGAAGCCAACTGGATTAGTGAACACAGCGAAATAGAGGCCATAGAGAAATGGGGCAAGCATGATGAGAAATGGGCGATTTCTGAAATCGCATCGACTATTATCCTTGGGATTTAAACTACAAGCTTCAAACGTAAAACCTATTCTTATGCCTTGAAGTCTTAAGCTTTCAGTTGCTTCAAGAATGTCTTACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTGTACCTTATATTTTATACCTTAAACATTTGGATCCTTAGAACCTTAGAATTCTTAGATCCTTTAAAACTAACCCTGTAAACATCTTGCTCAACTTATGCTCACTCAGCTCCAACAACCGATTGCTGACCAAAATCAACACAATTATACAAGAAGAACACCAAAGACCCAAAACGATCATTCCAACGATATAATTAAACTTTGGACACGTACACCATACGGCTCCTCGGATAGCTAGGATACCAGTGATTATGGAATTGATAACCAGCGCCGACATATCAACAATCGCCAAACAAATCATG</canonical>
            <polymorphic>TCATGACAACGAAAATGATGGAAGCGACAAAGTTGATTGAGCAAATCATAGCAGACTGAACCAGAATTTGAAAGCCCTGGAGTCATACTGTAGAAGGACTTAATAAGAATCCTGACCTACCAAATCATTCTTCCGATCCTTCCAACCAATTGCTTTTAATTTCTCTCGAACTTCTAAATACAACCAAACATACAGTATACAGGTGATTGCAACAATTGCCACGTTGTTAACAGCATGAGAGATGTTGATGTACTAAAAAATTATTCTGATATAATCATTGATAATTACAGTACCTTATCAGTTTTAATGTCACTGATCATCGGGTTGAATAGCCATGTGTAGTACTTTGAGTTGAAGCCAACTGGATTAGTGAACACAGCGAAATAGAGGCCATAGAGAAATGGGGCAAGCATGATGAGAAATGGGCGATTTCTGAAATCGCATCGACTATTATCCTTGGGATTTAAACTACAAGCTTCAAACGTAAAACCTATTCTTAWGCCTTGAAGTCTTAAGCTTTCAGTTGCTTCAAGAATGTCTTACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTGTACCTTATATTTTATACCTTAAACATTTGGATCCTTAGAACCTTAGAATTCTTAGATCCTTTAAAACTAACCCTGTAAACATCTTGCTCAACTTATGCTCACTCAGCTCCAACAACCGATTGCTGACCAAAATCAACACAATTATACAAGAAGAACACCAAAGACCCAAAACGATCATTCCAACGATATAATTAAACTTTGGACACGTACACCATACGGCTCCTCGGATAGCTAGGATACCAGTGATTATGGAATTGATAACCAGCGCCGACATATCAACAATCGCCAAACAAATCATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTGAACACAGCGAAATAGAG</pcr_primer_p1>
		<pcr_primer_p2>AAGGTACAAGGTATAAGGTATAAGGT</pcr_primer_p2>
		<pcr_amplicon_size>340</pcr_amplicon_size>
		<canonical_amplicon>TAGTGAACACAGCGAAATAGAGGCCATAGAGAAATGGGGCAAGCATGATGAGAAATGGGCGATTTCTGAAATCGCATCGACTATTATCCTTGGGATTTAAACTACAAGCTTCAAACGTAAAACCTATTCTTATGCCTTGAAGTCTTAAGCTTTCAGTTGCTTCAAGAATGTCTTACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTGTACCTT</canonical_amplicon>
		<polymorphic_amplicon>TAGTGAACACAGCGAAATAGAGGCCATAGAGAAATGGGGCAAGCATGATGAGAAATGGGCGATTTCTGAAATCGCATCGACTATTATCCTTGGGATTTAAACTACAAGCTTCAAACGTAAAACCTATTCTTAWGCCTTGAAGTCTTAAGCTTTCAGTTGCTTCAAGAATGTCTTACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTATACCTTGTACCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36011</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>171075</contig_pos>
        <strand>+</strand>
        <context>CTAAGGGGAA[A/G]ATKTGGGGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGAATTCAAAGGTAAGACATCTGGACACACAGATTGACACTAAGGGGAA</left_flank>
        <right_flank>ATTTGGGGCAGTTTTAACCGAATTTCGGCTTTTTTGGGCCAATTGTTGTT</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGGCGTGGTGTTTTGGCGCGGAAACGAAATCAGGAGATTGTGTTGCTAGACAGAAATCCAGCAGCTCTCAAACAGGTCGAAAGTATGCGTGCAATTTCGGAGTTGACGGGAACATCGGATTCAAGTGACACGAAGCTTTTGGCATTGGCGTCGATTCTCGCTAGAGAAGAACCGAGTGATTCGAGAAGACCNNNNNNNNNNCCACGTTTTAATTTGATAGACAGTACAAAAATTTGCCGAAAATCGAAAAATTGGAACCTCCGGAAATCAGCCGAAAATCGGTAAAAAACCGAAATTCGAAATTTTCGAAAATGCGCTGAAAATCATCGGAAATTTCAACATTTTCCAGATGATGAACGACACGCTGGACTCGATTCTCGACGCTCCAGGCGACGCCGATGAGCAAGACGCAATTGTGGCTCAGGTTCTCGATGAGATTGGCATTGAGATGAATTCAAAGGTAAGACATCTGGACACACAGATTGACACTAAGGGGAAAATTTGGGGCAGTTTTAACCGAATTTCGGCTTTTTTGGGCCAATTGTTGTTAATTTTCACTCATTTTTGCACCGATTTTCATCTTTTTCAGCTCGCCAACGTGCCAACCATCCCGACTCGTGTCGGCGCCGCCAGCGCCTCGACACCCGACGACTTGGAGGATCTCGAAGCGAAATTGGCCAAATTGAGAAGCTAAATTATTACATTTTCTCTGGAATTTTTTATTATTTAACTGTAAATATTCGTGTGAATTTATTTGTGTATGAAAGAAAAGAATGAATGATATTGAATGGATGAATTTGTGGAATTACAGACAAAAAAAAAGAGAATCTCGAGAAGAATCAAGGTAGATCAAATGCGATGATTTGTGGTGGCGATTGGGAGAATTGTTTGTTTTCTCTGGGATTATTGTCGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGC</canonical>
            <polymorphic>GCGGCGTGGTGTTTTGGCGCGGAAACGAAATCAGGAGATTGTGTTGCTAGACAGAAATCCAGCAGCTCTCAAACAGGTCGAAAGTATGCGTGCAATTTCGGAGTTGACGGGAACATCGGATTCAAGTGACACGAAGCTTTTGGCATTGGCGTCGATTCTCGCTAGAGAAGAACCGAGTGATTCGAGAAGACCNNNNNNNNNNCCACGTTTTAATTTGATAGACAGTACAAAAATTTGCCGAAAATCGAAAAATTGGAACCTCCGGAAATCAGCCGAAAATCGGTAAAAAACCGAAATTCGAAATTTTCGAAAATGCGCTGAAAATCATCGGAAATTTCAACATTTTCCAGATGATGAACGACACGCTGGACTCGATTCTCGACGCTCCAGGCGACGCCGATGAGCAAGACGCAATTGTGGCTCAGGTTCTCGATGAGATTGGCATTGAGATGAATTCAAAGGTAAGACATCTGGACACACAGATTGACACTAAGGGGAARATTTGGGGCAGTTTTAACCGAATTTCGGCTTTTTTGGGCCAATTGTTGTTAATTTTCACTCATTTTTGCACCGATTTTCATCTTTTTCAGCTCGCCAACGTGCCAACCATCCCGACTCGTGTCGGCGCCGCCAGCGCCTCGACACCCGACGACTTGGAGGATCTCGAAGCGAAATTGGCCAAATTGAGAAGCTAAATTATTACATTTTCTCTGGAATTTTTTATTATTTAACTGTAAATATTCGTGTGAATTTATTTGTGTATGAAAGAAAAGAATGAATGATATTGAATGGATGAATTTGTGGAATTACAGACAAAAAAAAAGAGAATCTCGAGAAGAATCAAGGTAGATCAAATGCGATGATTTGTGGTGGCGATTGGGAGAATTGTTTGTTTTCTCTGGGATTATTGTCGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>231 205 194 120 63 47 47 34 31 21 7</canonical_bands>
                <polymorphic_bands>231 205 194 120 68 63 47 34 31 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>122 118 117 93 80 79 47 47 44 40 34 31 21 20 20 20 19 13 10 9 9 7</canonical_bands>
                <polymorphic_bands>122 118 117 93 80 79 68 47 44 40 34 31 20 20 20 19 13 10 9 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATCATCGGAAATTTCAAC</pcr_primer_p1>
		<pcr_primer_p2>CAAAAATGAGTGAAAATTAACAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAATCATCGGAAATTTCAACATTTTCCAGATGATGAACGACACGCTGGACTCGATTCTCGACGCTCCAGGCGACGCCGATGAGCAAGACGCAATTGTGGCTCAGGTTCTCGATGAGATTGGCATTGAGATGAATTCAAAGGTAAGACATCTGGACACACAGATTGACACTAAGGGGAAAATTTGGGGCAGTTTTAACCGAATTTCGGCTTTTTTGGGCCAATTGTTGTTAATTTTCACTCATTTTTG</canonical_amplicon>
		<polymorphic_amplicon>AAAATCATCGGAAATTTCAACATTTTCCAGATGATGAACGACACGCTGGACTCGATTCTCGACGCTCCAGGCGACGCCGATGAGCAAGACGCAATTGTGGCTCAGGTTCTCGATGAGATTGGCATTGAGATGAATTCAAAGGTAAGACATCTGGACACACAGATTGACACTAAGGGGAARATTTGGGGCAGTTTTAACCGAATTTCGGCTTTTTTGGGCCAATTGTTGTTAATTTTCACTCATTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36012</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>171078</contig_pos>
        <strand>+</strand>
        <context>AGGGGAARAT[G/T]TGGGGCAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTCAAAGGTAAGACATCTGGACACACAGATTGACACTAAGGGGAAAAT</left_flank>
        <right_flank>TGGGGCAGTTTTAACCGAATTTCGGCTTTTTTGGGCCAATTGTTGTTAAT</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGTGGTGTTTTGGCGCGGAAACGAAATCAGGAGATTGTGTTGCTAGACAGAAATCCAGCAGCTCTCAAACAGGTCGAAAGTATGCGTGCAATTTCGGAGTTGACGGGAACATCGGATTCAAGTGACACGAAGCTTTTGGCATTGGCGTCGATTCTCGCTAGAGAAGAACCGAGTGATTCGAGAAGACCNNNNNNNNNNCCACGTTTTAATTTGATAGACAGTACAAAAATTTGCCGAAAATCGAAAAATTGGAACCTCCGGAAATCAGCCGAAAATCGGTAAAAAACCGAAATTCGAAATTTTCGAAAATGCGCTGAAAATCATCGGAAATTTCAACATTTTCCAGATGATGAACGACACGCTGGACTCGATTCTCGACGCTCCAGGCGACGCCGATGAGCAAGACGCAATTGTGGCTCAGGTTCTCGATGAGATTGGCATTGAGATGAATTCAAAGGTAAGACATCTGGACACACAGATTGACACTAAGGGGAAAATTTGGGGCAGTTTTAACCGAATTTCGGCTTTTTTGGGCCAATTGTTGTTAATTTTCACTCATTTTTGCACCGATTTTCATCTTTTTCAGCTCGCCAACGTGCCAACCATCCCGACTCGTGTCGGCGCCGCCAGCGCCTCGACACCCGACGACTTGGAGGATCTCGAAGCGAAATTGGCCAAATTGAGAAGCTAAATTATTACATTTTCTCTGGAATTTTTTATTATTTAACTGTAAATATTCGTGTGAATTTATTTGTGTATGAAAGAAAAGAATGAATGATATTGAATGGATGAATTTGTGGAATTACAGACAAAAAAAAAGAGAATCTCGAGAAGAATCAAGGTAGATCAAATGCGATGATTTGTGGTGGCGATTGGGAGAATTGTTTGTTTTCTCTGGGATTATTGTCGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTG</canonical>
            <polymorphic>GCGTGGTGTTTTGGCGCGGAAACGAAATCAGGAGATTGTGTTGCTAGACAGAAATCCAGCAGCTCTCAAACAGGTCGAAAGTATGCGTGCAATTTCGGAGTTGACGGGAACATCGGATTCAAGTGACACGAAGCTTTTGGCATTGGCGTCGATTCTCGCTAGAGAAGAACCGAGTGATTCGAGAAGACCNNNNNNNNNNCCACGTTTTAATTTGATAGACAGTACAAAAATTTGCCGAAAATCGAAAAATTGGAACCTCCGGAAATCAGCCGAAAATCGGTAAAAAACCGAAATTCGAAATTTTCGAAAATGCGCTGAAAATCATCGGAAATTTCAACATTTTCCAGATGATGAACGACACGCTGGACTCGATTCTCGACGCTCCAGGCGACGCCGATGAGCAAGACGCAATTGTGGCTCAGGTTCTCGATGAGATTGGCATTGAGATGAATTCAAAGGTAAGACATCTGGACACACAGATTGACACTAAGGGGAAAATKTGGGGCAGTTTTAACCGAATTTCGGCTTTTTTGGGCCAATTGTTGTTAATTTTCACTCATTTTTGCACCGATTTTCATCTTTTTCAGCTCGCCAACGTGCCAACCATCCCGACTCGTGTCGGCGCCGCCAGCGCCTCGACACCCGACGACTTGGAGGATCTCGAAGCGAAATTGGCCAAATTGAGAAGCTAAATTATTACATTTTCTCTGGAATTTTTTATTATTTAACTGTAAATATTCGTGTGAATTTATTTGTGTATGAAAGAAAAGAATGAATGATATTGAATGGATGAATTTGTGGAATTACAGACAAAAAAAAAGAGAATCTCGAGAAGAATCAAGGTAGATCAAATGCGATGATTTGTGGTGGCGATTGGGAGAATTGTTTGTTTTCTCTGGGATTATTGTCGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>228 208 194 120 63 47 47 34 31 21 7</canonical_bands>
                <polymorphic_bands>228 208 194 120 68 63 47 34 31 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>122 120 118 90 80 79 47 47 44 40 34 31 21 20 20 20 19 13 10 9 9 7</canonical_bands>
                <polymorphic_bands>122 120 118 90 80 79 68 47 44 40 34 31 20 20 20 19 13 10 9 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATCATCGGAAATTTCAAC</pcr_primer_p1>
		<pcr_primer_p2>CAAAAATGAGTGAAAATTAACAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAATCATCGGAAATTTCAACATTTTCCAGATGATGAACGACACGCTGGACTCGATTCTCGACGCTCCAGGCGACGCCGATGAGCAAGACGCAATTGTGGCTCAGGTTCTCGATGAGATTGGCATTGAGATGAATTCAAAGGTAAGACATCTGGACACACAGATTGACACTAAGGGGAAAATTTGGGGCAGTTTTAACCGAATTTCGGCTTTTTTGGGCCAATTGTTGTTAATTTTCACTCATTTTTG</canonical_amplicon>
		<polymorphic_amplicon>AAAATCATCGGAAATTTCAACATTTTCCAGATGATGAACGACACGCTGGACTCGATTCTCGACGCTCCAGGCGACGCCGATGAGCAAGACGCAATTGTGGCTCAGGTTCTCGATGAGATTGGCATTGAGATGAATTCAAAGGTAAGACATCTGGACACACAGATTGACACTAAGGGGAAAATKTGGGGCAGTTTTAACCGAATTTCGGCTTTTTTGGGCCAATTGTTGTTAATTTTCACTCATTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36013</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>171091</contig_pos>
        <strand>+</strand>
        <context>GGGCAGTTTT[A/T]ACCGAATTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACATCTGGACACACAGATTGACACTAAGGGGAAAATTTGGGGCAGTTTT</left_flank>
        <right_flank>ACCGAATTTCGGCTTTTTTGGGCCAATTGTTGTTAATTTTCACTCATTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGCGGAAACGAAATCAGGAGATTGTGTTGCTAGACAGAAATCCAGCAGCTCTCAAACAGGTCGAAAGTATGCGTGCAATTTCGGAGTTGACGGGAACATCGGATTCAAGTGACACGAAGCTTTTGGCATTGGCGTCGATTCTCGCTAGAGAAGAACCGAGTGATTCGAGAAGACCNNNNNNNNNNCCACGTTTTAATTTGATAGACAGTACAAAAATTTGCCGAAAATCGAAAAATTGGAACCTCCGGAAATCAGCCGAAAATCGGTAAAAAACCGAAATTCGAAATTTTCGAAAATGCGCTGAAAATCATCGGAAATTTCAACATTTTCCAGATGATGAACGACACGCTGGACTCGATTCTCGACGCTCCAGGCGACGCCGATGAGCAAGACGCAATTGTGGCTCAGGTTCTCGATGAGATTGGCATTGAGATGAATTCAAAGGTAAGACATCTGGACACACAGATTGACACTAAGGGGAAAATTTGGGGCAGTTTTAACCGAATTTCGGCTTTTTTGGGCCAATTGTTGTTAATTTTCACTCATTTTTGCACCGATTTTCATCTTTTTCAGCTCGCCAACGTGCCAACCATCCCGACTCGTGTCGGCGCCGCCAGCGCCTCGACACCCGACGACTTGGAGGATCTCGAAGCGAAATTGGCCAAATTGAGAAGCTAAATTATTACATTTTCTCTGGAATTTTTTATTATTTAACTGTAAATATTCGTGTGAATTTATTTGTGTATGAAAGAAAAGAATGAATGATATTGAATGGATGAATTTGTGGAATTACAGACAAAAAAAAAGAGAATCTCGAGAAGAATCAAGGTAGATCAAATGCGATGATTTGTGGTGGCGATTGGGAGAATTGTTTGTTTTCTCTGGGATTATTGTCGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTGGCGCG</canonical>
            <polymorphic>GCGCGGAAACGAAATCAGGAGATTGTGTTGCTAGACAGAAATCCAGCAGCTCTCAAACAGGTCGAAAGTATGCGTGCAATTTCGGAGTTGACGGGAACATCGGATTCAAGTGACACGAAGCTTTTGGCATTGGCGTCGATTCTCGCTAGAGAAGAACCGAGTGATTCGAGAAGACCNNNNNNNNNNCCACGTTTTAATTTGATAGACAGTACAAAAATTTGCCGAAAATCGAAAAATTGGAACCTCCGGAAATCAGCCGAAAATCGGTAAAAAACCGAAATTCGAAATTTTCGAAAATGCGCTGAAAATCATCGGAAATTTCAACATTTTCCAGATGATGAACGACACGCTGGACTCGATTCTCGACGCTCCAGGCGACGCCGATGAGCAAGACGCAATTGTGGCTCAGGTTCTCGATGAGATTGGCATTGAGATGAATTCAAAGGTAAGACATCTGGACACACAGATTGACACTAAGGGGAAAATTTGGGGCAGTTTTWACCGAATTTCGGCTTTTTTGGGCCAATTGTTGTTAATTTTCACTCATTTTTGCACCGATTTTCATCTTTTTCAGCTCGCCAACGTGCCAACCATCCCGACTCGTGTCGGCGCCGCCAGCGCCTCGACACCCGACGACTTGGAGGATCTCGAAGCGAAATTGGCCAAATTGAGAAGCTAAATTATTACATTTTCTCTGGAATTTTTTATTATTTAACTGTAAATATTCGTGTGAATTTATTTGTGTATGAAAGAAAAGAATGAATGATATTGAATGGATGAATTTGTGGAATTACAGACAAAAAAAAAGAGAATCTCGAGAAGAATCAAGGTAGATCAAATGCGATGATTTGTGGTGGCGATTGGGAGAATTGTTTGTTTTCTCTGGGATTATTGTCGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTGGCGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>304 288 194 179 35</canonical_bands>
                <polymorphic_bands>339 288 194 179</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAGACATCTGGACACACAGATT</pcr_primer_p1>
		<pcr_primer_p2>TCCAGAGAAAATGTAATAATTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TAAGACATCTGGACACACAGATTGACACTAAGGGGAAAATTTGGGGCAGTTTTAACCGAATTTCGGCTTTTTTGGGCCAATTGTTGTTAATTTTCACTCATTTTTGCACCGATTTTCATCTTTTTCAGCTCGCCAACGTGCCAACCATCCCGACTCGTGTCGGCGCCGCCAGCGCCTCGACACCCGACGACTTGGAGGATCTCGAAGCGAAATTGGCCAAATTGAGAAGCTAAATTATTACATTTTCTCTGGA</canonical_amplicon>
		<polymorphic_amplicon>TAAGACATCTGGACACACAGATTGACACTAAGGGGAAAATTTGGGGCAGTTTTWACCGAATTTCGGCTTTTTTGGGCCAATTGTTGTTAATTTTCACTCATTTTTGCACCGATTTTCATCTTTTTCAGCTCGCCAACGTGCCAACCATCCCGACTCGTGTCGGCGCCGCCAGCGCCTCGACACCCGACGACTTGGAGGATCTCGAAGCGAAATTGGCCAAATTGAGAAGCTAAATTATTACATTTTCTCTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36014</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>171144</contig_pos>
        <strand>+</strand>
        <context>CTCATTTTTG[A/C]ACCGATTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGAATTTCGGCTTTTTTGGGCCAATTGTTGTTAATTTTCACTCATTTTTG</left_flank>
        <right_flank>ACCGATTTTCATCTTTTTCAGCTCGCCAACGTGCCAACCATCCCGACTCG</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAACAGGTCGAAAGTATGCGTGCAATTTCGGAGTTGACGGGAACATCGGATTCAAGTGACACGAAGCTTTTGGCATTGGCGTCGATTCTCGCTAGAGAAGAACCGAGTGATTCGAGAAGACCNNNNNNNNNNCCACGTTTTAATTTGATAGACAGTACAAAAATTTGCCGAAAATCGAAAAATTGGAACCTCCGGAAATCAGCCGAAAATCGGTAAAAAACCGAAATTCGAAATTTTCGAAAATGCGCTGAAAATCATCGGAAATTTCAACATTTTCCAGATGATGAACGACACGCTGGACTCGATTCTCGACGCTCCAGGCGACGCCGATGAGCAAGACGCAATTGTGGCTCAGGTTCTCGATGAGATTGGCATTGAGATGAATTCAAAGGTAAGACATCTGGACACACAGATTGACACTAAGGGGAAAATTTGGGGCAGTTTTAACCGAATTTCGGCTTTTTTGGGCCAATTGTTGTTAATTTTCACTCATTTTTGCACCGATTTTCATCTTTTTCAGCTCGCCAACGTGCCAACCATCCCGACTCGTGTCGGCGCCGCCAGCGCCTCGACACCCGACGACTTGGAGGATCTCGAAGCGAAATTGGCCAAATTGAGAAGCTAAATTATTACATTTTCTCTGGAATTTTTTATTATTTAACTGTAAATATTCGTGTGAATTTATTTGTGTATGAAAGAAAAGAATGAATGATATTGAATGGATGAATTTGTGGAATTACAGACAAAAAAAAAGAGAATCTCGAGAAGAATCAAGGTAGATCAAATGCGATGATTTGTGGTGGCGATTGGGAGAATTGTTTGTTTTCTCTGGGATTATTGTCGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTGGCGCGGAAACGAAATCAGGAGATTGTGTTGCTAGACAGAAATCCAGCAGCTCTCAAAC</canonical>
            <polymorphic>CAAACAGGTCGAAAGTATGCGTGCAATTTCGGAGTTGACGGGAACATCGGATTCAAGTGACACGAAGCTTTTGGCATTGGCGTCGATTCTCGCTAGAGAAGAACCGAGTGATTCGAGAAGACCNNNNNNNNNNCCACGTTTTAATTTGATAGACAGTACAAAAATTTGCCGAAAATCGAAAAATTGGAACCTCCGGAAATCAGCCGAAAATCGGTAAAAAACCGAAATTCGAAATTTTCGAAAATGCGCTGAAAATCATCGGAAATTTCAACATTTTCCAGATGATGAACGACACGCTGGACTCGATTCTCGACGCTCCAGGCGACGCCGATGAGCAAGACGCAATTGTGGCTCAGGTTCTCGATGAGATTGGCATTGAGATGAATTCAAAGGTAAGACATCTGGACACACAGATTGACACTAAGGGGAAAATTTGGGGCAGTTTTAACCGAATTTCGGCTTTTTTGGGCCAATTGTTGTTAATTTTCACTCATTTTTGMACCGATTTTCATCTTTTTCAGCTCGCCAACGTGCCAACCATCCCGACTCGTGTCGGCGCCGCCAGCGCCTCGACACCCGACGACTTGGAGGATCTCGAAGCGAAATTGGCCAAATTGAGAAGCTAAATTATTACATTTTCTCTGGAATTTTTTATTATTTAACTGTAAATATTCGTGTGAATTTATTTGTGTATGAAAGAAAAGAATGAATGATATTGAATGGATGAATTTGTGGAATTACAGACAAAAAAAAAGAGAATCTCGAGAAGAATCAAGGTAGATCAAATGCGATGATTTGTGGTGGCGATTGGGAGAATTGTTTGTTTTCTCTGGGATTATTGTCGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTGGCGCGGAAACGAAATCAGGAGATTGTGTTGCTAGACAGAAATCCAGCAGCTCTCAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>476 422 79 23</canonical_bands>
                <polymorphic_bands>898 79 23</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>158 102 69 66 58 56 55 48 43 36 32 32 31 30 29 26 23 23 19 12 12 10 10 7 3 3 3 2 2</canonical_bands>
                <polymorphic_bands>158 102 69 66 58 56 55 48 44 43 36 32 31 30 29 26 23 23 19 12 10 10 7 3 3 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGACACACAGATTGACACTAAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTCCAGAGAAAATGTAATAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGACACACAGATTGACACTAAGGGGAAAATTTGGGGCAGTTTTAACCGAATTTCGGCTTTTTTGGGCCAATTGTTGTTAATTTTCACTCATTTTTGCACCGATTTTCATCTTTTTCAGCTCGCCAACGTGCCAACCATCCCGACTCGTGTCGGCGCCGCCAGCGCCTCGACACCCGACGACTTGGAGGATCTCGAAGCGAAATTGGCCAAATTGAGAAGCTAAATTATTACATTTTCTCTGGAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>GGACACACAGATTGACACTAAGGGGAAAATTTGGGGCAGTTTTAACCGAATTTCGGCTTTTTTGGGCCAATTGTTGTTAATTTTCACTCATTTTTGMACCGATTTTCATCTTTTTCAGCTCGCCAACGTGCCAACCATCCCGACTCGTGTCGGCGCCGCCAGCGCCTCGACACCCGACGACTTGGAGGATCTCGAAGCGAAATTGGCCAAATTGAGAAGCTAAATTATTACATTTTCTCTGGAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36015</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>171228</contig_pos>
        <strand>+</strand>
        <context>CACCCGACGA[C/T]TTGGAGGATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAACCATCCCGACTCGTGTCGGCGCCGCCAGCGCCTCGACACCCGACGA</left_flank>
        <right_flank>TTGGAGGATCTCGAAGCGAAATTGGCCAAATTGAGAAGCTAAATTATTAC</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTCTCGCTAGAGAAGAACCGAGTGATTCGAGAAGACCNNNNNNNNNNCCACGTTTTAATTTGATAGACAGTACAAAAATTTGCCGAAAATCGAAAAATTGGAACCTCCGGAAATCAGCCGAAAATCGGTAAAAAACCGAAATTCGAAATTTTCGAAAATGCGCTGAAAATCATCGGAAATTTCAACATTTTCCAGATGATGAACGACACGCTGGACTCGATTCTCGACGCTCCAGGCGACGCCGATGAGCAAGACGCAATTGTGGCTCAGGTTCTCGATGAGATTGGCATTGAGATGAATTCAAAGGTAAGACATCTGGACACACAGATTGACACTAAGGGGAAAATTTGGGGCAGTTTTAACCGAATTTCGGCTTTTTTGGGCCAATTGTTGTTAATTTTCACTCATTTTTGCACCGATTTTCATCTTTTTCAGCTCGCCAACGTGCCAACCATCCCGACTCGTGTCGGCGCCGCCAGCGCCTCGACACCCGACGACTTGGAGGATCTCGAAGCGAAATTGGCCAAATTGAGAAGCTAAATTATTACATTTTCTCTGGAATTTTTTATTATTTAACTGTAAATATTCGTGTGAATTTATTTGTGTATGAAAGAAAAGAATGAATGATATTGAATGGATGAATTTGTGGAATTACAGACAAAAAAAAAGAGAATCTCGAGAAGAATCAAGGTAGATCAAATGCGATGATTTGTGGTGGCGATTGGGAGAATTGTTTGTTTTCTCTGGGATTATTGTCGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTGGCGCGGAAACGAAATCAGGAGATTGTGTTGCTAGACAGAAATCCAGCAGCTCTCAAACAGGTCGAAAGTATGCGTGCAATTTCGGAGTTGACGGGAACATCGGATTCAAGTGACACGAAGCTTTTGGCATTGGCGTCGATTC</canonical>
            <polymorphic>GATTCTCGCTAGAGAAGAACCGAGTGATTCGAGAAGACCNNNNNNNNNNCCACGTTTTAATTTGATAGACAGTACAAAAATTTGCCGAAAATCGAAAAATTGGAACCTCCGGAAATCAGCCGAAAATCGGTAAAAAACCGAAATTCGAAATTTTCGAAAATGCGCTGAAAATCATCGGAAATTTCAACATTTTCCAGATGATGAACGACACGCTGGACTCGATTCTCGACGCTCCAGGCGACGCCGATGAGCAAGACGCAATTGTGGCTCAGGTTCTCGATGAGATTGGCATTGAGATGAATTCAAAGGTAAGACATCTGGACACACAGATTGACACTAAGGGGAAAATTTGGGGCAGTTTTAACCGAATTTCGGCTTTTTTGGGCCAATTGTTGTTAATTTTCACTCATTTTTGCACCGATTTTCATCTTTTTCAGCTCGCCAACGTGCCAACCATCCCGACTCGTGTCGGCGCCGCCAGCGCCTCGACACCCGACGAYTTGGAGGATCTCGAAGCGAAATTGGCCAAATTGAGAAGCTAAATTATTACATTTTCTCTGGAATTTTTTATTATTTAACTGTAAATATTCGTGTGAATTTATTTGTGTATGAAAGAAAAGAATGAATGATATTGAATGGATGAATTTGTGGAATTACAGACAAAAAAAAAGAGAATCTCGAGAAGAATCAAGGTAGATCAAATGCGATGATTTGTGGTGGCGATTGGGAGAATTGTTTGTTTTCTCTGGGATTATTGTCGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGGCGTGGTGTTTTGGCGCGGAAACGAAATCAGGAGATTGTGTTGCTAGACAGAAATCCAGCAGCTCTCAAACAGGTCGAAAGTATGCGTGCAATTTCGGAGTTGACGGGAACATCGGATTCAAGTGACACGAAGCTTTTGGCATTGGCGTCGATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTGTTAATTTTCACTCATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCCATTCAATATCATTCATTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTTGTTAATTTTCACTCATTTTTGCACCGATTTTCATCTTTTTCAGCTCGCCAACGTGCCAACCATCCCGACTCGTGTCGGCGCCGCCAGCGCCTCGACACCCGACGACTTGGAGGATCTCGAAGCGAAATTGGCCAAATTGAGAAGCTAAATTATTACATTTTCTCTGGAATTTTTTATTATTTAACTGTAAATATTCGTGTGAATTTATTTGTGTATGAAAGAAAAGAATGAATGATATTGAATGGA</canonical_amplicon>
		<polymorphic_amplicon>TGTTGTTAATTTTCACTCATTTTTGCACCGATTTTCATCTTTTTCAGCTCGCCAACGTGCCAACCATCCCGACTCGTGTCGGCGCCGCCAGCGCCTCGACACCCGACGAYTTGGAGGATCTCGAAGCGAAATTGGCCAAATTGAGAAGCTAAATTATTACATTTTCTCTGGAATTTTTTATTATTTAACTGTAAATATTCGTGTGAATTTATTTGTGTATGAAAGAAAAGAATGAATGATATTGAATGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36016</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>174185</contig_pos>
        <strand>-</strand>
        <context>ACCAAAAATG[C/T]GTTTGGTTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTAGCTACAGTAATCCTTGACCTATGAAATCTACAGTAAACCAAAAATG</left_flank>
        <right_flank>GTTTGGTTGGAAAATGTGAATTTCAGAGCAAAATTATTCAATTTTCGATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGAGGAGAAGGAAGTGACAGGGGAAGCCGAAGAGGACGATGGACCACCAGTGCTAGAGAAGGAAGTCTAAATTGATTCAATTGCTTGCTTATCTTGTAATACTTGTTAGAATCGTATTAACAGGTTATTTTAGTACCGAAACGTTTCTTAGTTATTTATCAAATTTATCCGCTTCATAGTATATTATTGTTCTCATGTGTTAGATCCTCCTCTTCCTCTTCTGGAGACGCTTTGGCGGTGTTTGTTTGGGGTGGAGAGGTCTGAAAGAATTAAGCTACAGTAATCTTAATGTTACCGTAACCCTACAGTAGTCCCTCAGTGCCTAAAAAAGCTAAAGTAACCCAAGAATGAAATCTTTAGAAAAAAATAAAGTAGCCCTACAAGGAAGTACAGTAGTTCCTCAATAGAAAAGCTACAGTAACCAGAAAAACTGCTGTAAAGCCGAGTAGTAGCTACAGTAATCCTTGACCTATGAAATCTACAGTAAACCAAAAATGAGTTTGGTTGGAAAATGTGAATTTCAGAGCAAAATTATTCAATTTTCGATATTTCTCTGTGGGAAAATATTGAAAATGATGATATTTTTAGAAATTCCGAAAATTTGAGATTTCGGGAAAATTTTGATTTTCTTCAGAAAATTGGTTTTCAGAGCAAAAATGTATCAACTTTCGATAGTTTTTATGAAAAATGATAAGAATTCAGGTACAGTAATCCTCGAAAGTTCTAAAAAAATTTCAAGATTAAAAAAAGTTCGAATCGGAAAAAAATTGAATAAAATCGAGTTCTGGCTCTCTGCCAACTTATCTAAGGGATGAGCAGACAACTGTCGTTTATCTAGCTACGCGGGGCTCTTTTCTACAGATTATGGACCACCATGGACAAATTACACCGTTCTTCCAATTAAAAGCTTAGCGATGACTGCTACCTATCTCAGAAGCATCCTAAGCAATTAATAAAGAGACTGTTTAACAGCACATTGCCGACAGGTGGTTGCTCCA</canonical>
            <polymorphic>CTAGAGGAGAAGGAAGTGACAGGGGAAGCCGAAGAGGACGATGGACCACCAGTGCTAGAGAAGGAAGTCTAAATTGATTCAATTGCTTGCTTATCTTGTAATACTTGTTAGAATCGTATTAACAGGTTATTTTAGTACCGAAACGTTTCTTAGTTATTTATCAAATTTATCCGCTTCATAGTATATTATTGTTCTCATGTGTTAGATCCTCCTCTTCCTCTTCTGGAGACGCTTTGGCGGTGTTTGTTTGGGGTGGAGAGGTCTGAAAGAATTAAGCTACAGTAATCTTAATGTTACCGTAACCCTACAGTAGTCCCTCAGTGCCTAAAAAAGCTAAAGTAACCCAAGAATGAAATCTTTAGAAAAAAATAAAGTAGCCCTACAAGGAAGTACAGTAGTTCCTCAATAGAAAAGCTACAGTAACCAGAAAAACTGCTGTAAAGCCGAGTAGTAGCTACAGTAATCCTTGACCTATGAAATCTACAGTAAACCAAAAATGYGTTTGGTTGGAAAATGTGAATTTCAGAGCAAAATTATTCAATTTTCGATATTTCTCTGTGGGAAAATATTGAAAATGATGATATTTTTAGAAATTCCGAAAATTTGAGATTTCGGGAAAATTTTGATTTTCTTCAGAAAATTGGTTTTCAGAGCAAAAATGTATCAACTTTCGATAGTTTTTATGAAAAATGATAAGAATTCAGGTACAGTAATCCTCGAAAGTTCTAAAAAAATTTCAAGATTAAAAAAAGTTCGAATCGGAAAAAAATTGAATAAAATCGAGTTCTGGCTCTCTGCCAACTTATCTAAGGGATGAGCAGACAACTGTCGTTTATCTAGCTACGCGGGGCTCTTTTCTACAGATTATGGACCACCATGGACAAATTACACCGTTCTTCCAATTAAAAGCTTAGCGATGACTGCTACCTATCTCAGAAGCATCCTAAGCAATTAATAAAGAGACTGTTTAACAGCACATTGCCGACAGGTGGTTGCTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAACCAGAAAAACTGCTGTAAA</pcr_primer_p1>
		<pcr_primer_p2>AGTTGATACATTTTTGCTCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAACCAGAAAAACTGCTGTAAAGCCGAGTAGTAGCTACAGTAATCCTTGACCTATGAAATCTACAGTAAACCAAAAATGAGTTTGGTTGGAAAATGTGAATTTCAGAGCAAAATTATTCAATTTTCGATATTTCTCTGTGGGAAAATATTGAAAATGATGATATTTTTAGAAATTCCGAAAATTTGAGATTTCGGGAAAATTTTGATTTTCTTCAGAAAATTGGTTTTCAGAGCAAAAATGTATCAACT</canonical_amplicon>
		<polymorphic_amplicon>GTAACCAGAAAAACTGCTGTAAAGCCGAGTAGTAGCTACAGTAATCCTTGACCTATGAAATCTACAGTAAACCAAAAATGYGTTTGGTTGGAAAATGTGAATTTCAGAGCAAAATTATTCAATTTTCGATATTTCTCTGTGGGAAAATATTGAAAATGATGATATTTTTAGAAATTCCGAAAATTTGAGATTTCGGGAAAATTTTGATTTTCTTCAGAAAATTGGTTTTCAGAGCAAAAATGTATCAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36017</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>174305</contig_pos>
        <strand>-</strand>
        <context>TTTCGGGAAA[A/T]TTTTGATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAAAATGATGATATTTTTAGAAATTCCGAAAATTTGAGATTTCGGGAAA</left_flank>
        <right_flank>TTTTGATTTTCTTCAGAAAATTGGTTTTCAGAGCAAAAATGTATCAACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAGGTTATTTTAGTACCGAAACGTTTCTTAGTTATTTATCAAATTTATCCGCTTCATAGTATATTATTGTTCTCATGTGTTAGATCCTCCTCTTCCTCTTCTGGAGACGCTTTGGCGGTGTTTGTTTGGGGTGGAGAGGTCTGAAAGAATTAAGCTACAGTAATCTTAATGTTACCGTAACCCTACAGTAGTCCCTCAGTGCCTAAAAAAGCTAAAGTAACCCAAGAATGAAATCTTTAGAAAAAAATAAAGTAGCCCTACAAGGAAGTACAGTAGTTCCTCAATAGAAAAGCTACAGTAACCAGAAAAACTGCTGTAAAGCCGAGTAGTAGCTACAGTAATCCTTGACCTATGAAATCTACAGTAAACCAAAAATGAGTTTGGTTGGAAAATGTGAATTTCAGAGCAAAATTATTCAATTTTCGATATTTCTCTGTGGGAAAATATTGAAAATGATGATATTTTTAGAAATTCCGAAAATTTGAGATTTCGGGAAAATTTTGATTTTCTTCAGAAAATTGGTTTTCAGAGCAAAAATGTATCAACTTTCGATAGTTTTTATGAAAAATGATAAGAATTCAGGTACAGTAATCCTCGAAAGTTCTAAAAAAATTTCAAGATTAAAAAAAGTTCGAATCGGAAAAAAATTGAATAAAATCGAGTTCTGGCTCTCTGCCAACTTATCTAAGGGATGAGCAGACAACTGTCGTTTATCTAGCTACGCGGGGCTCTTTTCTACAGATTATGGACCACCATGGACAAATTACACCGTTCTTCCAATTAAAAGCTTAGCGATGACTGCTACCTATCTCAGAAGCATCCTAAGCAATTAATAAAGAGACTGTTTAACAGCACATTGCCGACAGGTGGTTGCTCCATGGCTTATATGGACCCAAAAATTCAAAAACGGACCAACAGCGTTTTCAAGGCGGCTCATCATTTTTCGTTCTCTTACAAATTAAACGATTGTTTTGTAACGGATTAATAGCGGCTCTGTA</canonical>
            <polymorphic>AACAGGTTATTTTAGTACCGAAACGTTTCTTAGTTATTTATCAAATTTATCCGCTTCATAGTATATTATTGTTCTCATGTGTTAGATCCTCCTCTTCCTCTTCTGGAGACGCTTTGGCGGTGTTTGTTTGGGGTGGAGAGGTCTGAAAGAATTAAGCTACAGTAATCTTAATGTTACCGTAACCCTACAGTAGTCCCTCAGTGCCTAAAAAAGCTAAAGTAACCCAAGAATGAAATCTTTAGAAAAAAATAAAGTAGCCCTACAAGGAAGTACAGTAGTTCCTCAATAGAAAAGCTACAGTAACCAGAAAAACTGCTGTAAAGCCGAGTAGTAGCTACAGTAATCCTTGACCTATGAAATCTACAGTAAACCAAAAATGAGTTTGGTTGGAAAATGTGAATTTCAGAGCAAAATTATTCAATTTTCGATATTTCTCTGTGGGAAAATATTGAAAATGATGATATTTTTAGAAATTCCGAAAATTTGAGATTTCGGGAAAWTTTTGATTTTCTTCAGAAAATTGGTTTTCAGAGCAAAAATGTATCAACTTTCGATAGTTTTTATGAAAAATGATAAGAATTCAGGTACAGTAATCCTCGAAAGTTCTAAAAAAATTTCAAGATTAAAAAAAGTTCGAATCGGAAAAAAATTGAATAAAATCGAGTTCTGGCTCTCTGCCAACTTATCTAAGGGATGAGCAGACAACTGTCGTTTATCTAGCTACGCGGGGCTCTTTTCTACAGATTATGGACCACCATGGACAAATTACACCGTTCTTCCAATTAAAAGCTTAGCGATGACTGCTACCTATCTCAGAAGCATCCTAAGCAATTAATAAAGAGACTGTTTAACAGCACATTGCCGACAGGTGGTTGCTCCATGGCTTATATGGACCCAAAAATTCAAAAACGGACCAACAGCGTTTTCAAGGCGGCTCATCATTTTTCGTTCTCTTACAAATTAAACGATTGTTTTGTAACGGATTAATAGCGGCTCTGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>355 287 101 79 73 43 35 18 9</canonical_bands>
                <polymorphic_bands>355 287 101 97 73 43 35 9</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>249 116 106 70 59 59 52 49 43 42 35 35 20 18 17 13 9 8</canonical_bands>
                <polymorphic_bands>249 116 106 70 59 59 52 49 43 42 38 35 35 17 13 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTACAGTAATCCTTGACCTATG</pcr_primer_p1>
		<pcr_primer_p2>CCTGAATTCTTATCATTTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCTACAGTAATCCTTGACCTATGAAATCTACAGTAAACCAAAAATGAGTTTGGTTGGAAAATGTGAATTTCAGAGCAAAATTATTCAATTTTCGATATTTCTCTGTGGGAAAATATTGAAAATGATGATATTTTTAGAAATTCCGAAAATTTGAGATTTCGGGAAAATTTTGATTTTCTTCAGAAAATTGGTTTTCAGAGCAAAAATGTATCAACTTTCGATAGTTTTTATGAAAAATGATAAGAATTCAGG</canonical_amplicon>
		<polymorphic_amplicon>GCTACAGTAATCCTTGACCTATGAAATCTACAGTAAACCAAAAATGAGTTTGGTTGGAAAATGTGAATTTCAGAGCAAAATTATTCAATTTTCGATATTTCTCTGTGGGAAAATATTGAAAATGATGATATTTTTAGAAATTCCGAAAATTTGAGATTTCGGGAAAWTTTTGATTTTCTTCAGAAAATTGGTTTTCAGAGCAAAAATGTATCAACTTTCGATAGTTTTTATGAAAAATGATAAGAATTCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36018</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>176153</contig_pos>
        <strand>+</strand>
        <context>AAAAAGAAAA[A/T]TTCTCAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCGATGTAAAAAAGAAATTTTTAGAAAACTAACTGTGAAAAAAAAGAAAA</left_flank>
        <right_flank>TTCTCAAAATTCAATTTTTTCAAAAATCCAGAAATTTGACTTTCAAACTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGGTGGCAGATTTTATTGATTTTGGACATAAAAATGGACCCAAAGAAGAGAAATTTGGGTTGTTTTCTATCGATTTTTCGGTTTCTTTTGGTCCGTTTTGGACCCTTTTTTTTGGTTAAGTTTCAAATGTTCTTTTAATGCTAAACCCAATTTTAGATTTGAGTTTTGCGGACCATTTTTCATCGATTTTTTCCTTTAATTTTCGTCAATTTTTTAAAGCTGAGCAATTTCAAAATTTTCAGAAATGGCCGCCGAATCGGCAACGACTGAAACTGTGAATAAGAATGGAACGACTGGCGACGAGTCGACGGTCGAAATTAAAGGAAATGGAGAAACGGTAATGAGCCTTTAAATACAAACTTTAAAAAAGATTACTGTAGAAAAATGTGGCAAAATTTTGACCGGAATTTTAGCTGACAACGAAAATTTTGAATTTGAAAAAATTTCCGATGTAAAAAAGAAATTTTTAGAAAACTAACTGTGAAAAAAAAGAAAAATTCTCAAAATTCAATTTTTTCAAAAATCCAGAAATTTGACTTTCAAACTCAAAATTTTGTAATTTTAAGATTTTTAGAACTTTCGAGGATTACTGTACCTGAATTCTTATCATTTTTCATAAAAACTATCGAAAGTTGATACATTTTTGCTCTGAAAACCAATTTTCTGAAGAAAATCAAAAATTTCCCGAAATCTCAAATTTTCGGAATTTCTAAAAATATCATCATTTTCAATATTTTCCCACAGAGAAATATCGAAAATTGAATAATTTTGCTCTGAAATTCACATTTTCCAACCAAACTCATTTTTGGTTTACTGTAGATTTCATAGGTCAAGGATTACTGTAGCTACTACTAGGCTTTACAGCAGTTTTTCTGGTTACTGTAGCTTTTCTATTGAGGAACTACTGTACTTCCTTGTAGGGCTACTTTATTTTTTTCTAAAGATTTCATTCTTGGGTTGCTTTAGCTTTTTTAGGTCACTGTAGGACTACTGTAGG</canonical>
            <polymorphic>TTTTGGTGGCAGATTTTATTGATTTTGGACATAAAAATGGACCCAAAGAAGAGAAATTTGGGTTGTTTTCTATCGATTTTTCGGTTTCTTTTGGTCCGTTTTGGACCCTTTTTTTTGGTTAAGTTTCAAATGTTCTTTTAATGCTAAACCCAATTTTAGATTTGAGTTTTGCGGACCATTTTTCATCGATTTTTTCCTTTAATTTTCGTCAATTTTTTAAAGCTGAGCAATTTCAAAATTTTCAGAAATGGCCGCCGAATCGGCAACGACTGAAACTGTGAATAAGAATGGAACGACTGGCGACGAGTCGACGGTCGAAATTAAAGGAAATGGAGAAACGGTAATGAGCCTTTAAATACAAACTTTAAAAAAGATTACTGTAGAAAAATGTGGCAAAATTTTGACCGGAATTTTAGCTGACAACGAAAATTTTGAATTTGAAAAAATTTCCGATGTAAAAAAGAAATTTTTAGAAAACTAACTGTGAAAAAAAAGAAAAWTTCTCAAAATTCAATTTTTTCAAAAATCCAGAAATTTGACTTTCAAACTCAAAATTTTGTAATTTTAAGATTTTTAGAACTTTCGAGGATTACTGTACCTGAATTCTTATCATTTTTCATAAAAACTATCGAAAGTTGATACATTTTTGCTCTGAAAACCAATTTTCTGAAGAAAATCAAAAATTTCCCGAAATCTCAAATTTTCGGAATTTCTAAAAATATCATCATTTTCAATATTTTCCCACAGAGAAATATCGAAAATTGAATAATTTTGCTCTGAAATTCACATTTTCCAACCAAACTCATTTTTGGTTTACTGTAGATTTCATAGGTCAAGGATTACTGTAGCTACTACTAGGCTTTACAGCAGTTTTTCTGGTTACTGTAGCTTTTCTATTGAGGAACTACTGTACTTCCTTGTAGGGCTACTTTATTTTTTTCTAAAGATTTCATTCTTGGGTTGCTTTAGCTTTTTTAGGTCACTGTAGGACTACTGTAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>220 182 160 80 73 54 49 34 25 20 20 19 17 12 10 9 9 7</canonical_bands>
                <polymorphic_bands>220 182 160 80 73 54 49 43 25 20 20 19 17 12 10 9 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>220 97 82 78 59 54 52 49 41 34 21 20 20 20 19 18 17 13 12 10 10 9 9 8 8 8 7 5</canonical_bands>
                <polymorphic_bands>220 97 82 78 59 54 52 49 43 41 21 20 20 20 19 18 17 13 12 10 10 9 8 8 8 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTAATGAGCCTTTAAATACAAAC</pcr_primer_p1>
		<pcr_primer_p2>AATCCTCGAAAGTTCTAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGTAATGAGCCTTTAAATACAAACTTTAAAAAAGATTACTGTAGAAAAATGTGGCAAAATTTTGACCGGAATTTTAGCTGACAACGAAAATTTTGAATTTGAAAAAATTTCCGATGTAAAAAAGAAATTTTTAGAAAACTAACTGTGAAAAAAAAGAAAAATTCTCAAAATTCAATTTTTTCAAAAATCCAGAAATTTGACTTTCAAACTCAAAATTTTGTAATTTTAAGATTTTTAGAACTTTCGAGGATT</canonical_amplicon>
		<polymorphic_amplicon>GGTAATGAGCCTTTAAATACAAACTTTAAAAAAGATTACTGTAGAAAAATGTGGCAAAATTTTGACCGGAATTTTAGCTGACAACGAAAATTTTGAATTTGAAAAAATTTCCGATGTAAAAAAGAAATTTTTAGAAAACTAACTGTGAAAAAAAAGAAAAWTTCTCAAAATTCAATTTTTTCAAAAATCCAGAAATTTGACTTTCAAACTCAAAATTTTGTAATTTTAAGATTTTTAGAACTTTCGAGGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36019</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>176510</contig_pos>
        <strand></strand>
        <context>AGCTACTACT[A/C]GGCTTTACAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTGGTTTACTGTAGATTTCATAGGTCAAGGATTACTGTAGCTACTACT</left_flank>
        <right_flank>GGCTTTACAGCAGTTTTTCTGGTTACTGTAGCTTTTCTATTGAGGAACTA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAAACTTTAAAAAAGATTACTGTAGAAAAATGTGGCAAAATTTTGACCGGAATTTTAGCTGACAACGAAAATTTTGAATTTGAAAAAATTTCCGATGTAAAAAAGAAATTTTTAGAAAACTAACTGTGAAAAAAAAGAAAAATTCTCAAAATTCAATTTTTTCAAAAATCCAGAAATTTGACTTTCAAACTCAAAATTTTGTAATTTTAAGATTTTTAGAACTTTCGAGGATTACTGTACCTGAATTCTTATCATTTTTCATAAAAACTATCGAAAGTTGATACATTTTTGCTCTGAAAACCAATTTTCTGAAGAAAATCAAAAATTTCCCGAAATCTCAAATTTTCGGAATTTCTAAAAATATCATCATTTTCAATATTTTCCCACAGAGAAATATCGAAAATTGAATAATTTTGCTCTGAAATTCACATTTTCCAACCAAACTCATTTTTGGTTTACTGTAGATTTCATAGGTCAAGGATTACTGTAGCTACTACTAGGCTTTACAGCAGTTTTTCTGGTTACTGTAGCTTTTCTATTGAGGAACTACTGTACTTCCTTGTAGGGCTACTTTATTTTTTTCTAAAGATTTCATTCTTGGGTTGCTTTAGCTTTTTTAGGTCACTGTAGGACTACTGTAGGGTTACGGTAACATTAAGATTACTGTAGCTTAATTCTTTCAGACCTCTCCACCCCAAACAAACACCGCCAAAGCGTCTCCAGAAGAGGAAGAGGAGGATCTAACACCGGCCAAGAAGCGAACTGGTGGATCGGAGGATGAGAAAACGGAAAGTCGAGGTGAGCAACGGATTACTGTAGAACAAAAAATGACAGGCTTTGAGAAGCAAAATGAGCCAAAATTCGGAAAAATTGGTCCAATAGTTTTTATTATTTTTTGAAAACACTTTTTTTGAACTATTTTTATTTTTTGAGAGTTTTGGATTTGTTGGGGTTACTGTAGTTCAAAAATTTTTTTCGATACTTTGAAGGTTTCAAACA</canonical>
            <polymorphic>ACAAACTTTAAAAAAGATTACTGTAGAAAAATGTGGCAAAATTTTGACCGGAATTTTAGCTGACAACGAAAATTTTGAATTTGAAAAAATTTCCGATGTAAAAAAGAAATTTTTAGAAAACTAACTGTGAAAAAAAAGAAAAATTCTCAAAATTCAATTTTTTCAAAAATCCAGAAATTTGACTTTCAAACTCAAAATTTTGTAATTTTAAGATTTTTAGAACTTTCGAGGATTACTGTACCTGAATTCTTATCATTTTTCATAAAAACTATCGAAAGTTGATACATTTTTGCTCTGAAAACCAATTTTCTGAAGAAAATCAAAAATTTCCCGAAATCTCAAATTTTCGGAATTTCTAAAAATATCATCATTTTCAATATTTTCCCACAGAGAAATATCGAAAATTGAATAATTTTGCTCTGAAATTCACATTTTCCAACCAAACTCATTTTTGGTTTACTGTAGATTTCATAGGTCAAGGATTACTGTAGCTACTACTMGGCTTTACAGCAGTTTTTCTGGTTACTGTAGCTTTTCTATTGAGGAACTACTGTACTTCCTTGTAGGGCTACTTTATTTTTTTCTAAAGATTTCATTCTTGGGTTGCTTTAGCTTTTTTAGGTCACTGTAGGACTACTGTAGGGTTACGGTAACATTAAGATTACTGTAGCTTAATTCTTTCAGACCTCTCCACCCCAAACAAACACCGCCAAAGCGTCTCCAGAAGAGGAAGAGGAGGATCTAACACCGGCCAAGAAGCGAACTGGTGGATCGGAGGATGAGAAAACGGAAAGTCGAGGTGAGCAACGGATTACTGTAGAACAAAAAATGACAGGCTTTGAGAAGCAAAATGAGCCAAAATTCGGAAAAATTGGTCCAATAGTTTTTATTATTTTTTGAAAACACTTTTTTTGAACTATTTTTATTTTTTGAGAGTTTTGGATTTGTTGGGGTTACTGTAGTTCAAAAATTTTTTTCGATACTTTGAAGGTTTCAAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGAATAATTTTGCTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TACCGTAACCCTACAGTAGTCCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTGAATAATTTTGCTCTGAAATTCACATTTTCCAACCAAACTCATTTTTGGTTTACTGTAGATTTCATAGGTCAAGGATTACTGTAGCTACTACTAGGCTTTACAGCAGTTTTTCTGGTTACTGTAGCTTTTCTATTGAGGAACTACTGTACTTCCTTGTAGGGCTACTTTATTTTTTTCTAAAGATTTCATTCTTGGGTTGCTTTAGCTTTTTTAGGTCACTGTAGGACTACTGTAGGGTTACGGTA</canonical_amplicon>
		<polymorphic_amplicon>AATTGAATAATTTTGCTCTGAAATTCACATTTTCCAACCAAACTCATTTTTGGTTTACTGTAGATTTCATAGGTCAAGGATTACTGTAGCTACTACTMGGCTTTACAGCAGTTTTTCTGGTTACTGTAGCTTTTCTATTGAGGAACTACTGTACTTCCTTGTAGGGCTACTTTATTTTTTTCTAAAGATTTCATTCTTGGGTTGCTTTAGCTTTTTTAGGTCACTGTAGGACTACTGTAGGGTTACGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36020</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>178291</contig_pos>
        <strand>+</strand>
        <context>GTAGGTCTTT[G/T]AAAAGAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGAGTTTTTTTGGGGAGGGCGGGGCTTGGTTGAGGTACTGTAGGTCTTT</left_flank>
        <right_flank>AAAAGAAAAAAAAGAAAAAAAACGCCGTTTGGGTCGAACCAACAACCCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTGTACTTTTTTGCAGCGATGATCGTCGAAATTCGAAAAAGTCCCGAGCCGACGGTGACTGGAAACACGATCGTTTCGATGAGAAATTCCAGCGACCCAAGACCAAAAAACAAATTGTGACAAAGTATGGATTCGATATTCGAATTAAGGAAGGCGAGACTCCAGATGACAAAGAGACGACAGCTCCAGAATCCACAGAAGACGATTCATCAGATGCACGTCATCTGAAACAGAAGCCGCGGCGAGTAACGTCTTCTGCAAACCGAGGGTCTTCTTCTGGAGGAGCACGTGGCGGTGGATCGAGGGGTACTGTAGGACGACGTCCGATGAAACAGAGGGAGCGAGAGGATACTGTAGATGAGTCGGAAGGCAAAGGAGATGAGGAAGAAGAAGCGCGGCCAGCACAGAAGAGGAATGTAAAGCAAGCGGAGAAACCGAGGAAGACGAGTGAGTTTTTTTGGGGAGGGCGGGGCTTGGTTGAGGTACTGTAGGTCTTTAAAAAGAAAAAAAAGAAAAAAAACGCCGTTTGGGTCGAACCAACAACCCCCAAAACTCAATTGATCGATAGCCCAGCGCAGTACCACTACATCACGAGCTCACACGAATGGAAAAGGAGCGCATGGCGTATAGAAAGGGAGTGGTGGGTGGCGCCCCACAGGTCGCGCATTGGGACCCACTGGAGTGGTGAAAATCGATGCCGTACAACCACTGTCAAGTTTGAGCTAATTTTTCTCGGCTCCTGTTCAAGATATCAAAACTGTGTTAACTGATAAAATGTTTGTGATATTATGATAAACATCTTATCAGTTGACATATCCTTGATATCTTTTACATAAACCGAGATACGTTGGCTCAAAGTTAAAAGTTAGTATTCTAAGATTCTGAAATTCTTAAATTTTGAAAATTTTCCAGAACCCGCTCCACCACAATCCAGCGAAGACAACGAAGAAGAAGAAGAAGACGATGAGGATCAAGGTGTTCGTCGTGGTCAACGTCGT</canonical>
            <polymorphic>TACTGTACTTTTTTGCAGCGATGATCGTCGAAATTCGAAAAAGTCCCGAGCCGACGGTGACTGGAAACACGATCGTTTCGATGAGAAATTCCAGCGACCCAAGACCAAAAAACAAATTGTGACAAAGTATGGATTCGATATTCGAATTAAGGAAGGCGAGACTCCAGATGACAAAGAGACGACAGCTCCAGAATCCACAGAAGACGATTCATCAGATGCACGTCATCTGAAACAGAAGCCGCGGCGAGTAACGTCTTCTGCAAACCGAGGGTCTTCTTCTGGAGGAGCACGTGGCGGTGGATCGAGGGGTACTGTAGGACGACGTCCGATGAAACAGAGGGAGCGAGAGGATACTGTAGATGAGTCGGAAGGCAAAGGAGATGAGGAAGAAGAAGCGCGGCCAGCACAGAAGAGGAATGTAAAGCAAGCGGAGAAACCGAGGAAGACGAGTGAGTTTTTTTGGGGAGGGCGGGGCTTGGTTGAGGTACTGTAGGTCTTTKAAAAGAAAAAAAAGAAAAAAAACGCCGTTTGGGTCGAACCAACAACCCCCAAAACTCAATTGATCGATAGCCCAGCGCAGTACCACTACATCACGAGCTCACACGAATGGAAAAGGAGCGCATGGCGTATAGAAAGGGAGTGGTGGGTGGCGCCCCACAGGTCGCGCATTGGGACCCACTGGAGTGGTGAAAATCGATGCCGTACAACCACTGTCAAGTTTGAGCTAATTTTTCTCGGCTCCTGTTCAAGATATCAAAACTGTGTTAACTGATAAAATGTTTGTGATATTATGATAAACATCTTATCAGTTGACATATCCTTGATATCTTTTACATAAACCGAGATACGTTGGCTCAAAGTTAAAAGTTAGTATTCTAAGATTCTGAAATTCTTAAATTTTGAAAATTTTCCAGAACCCGCTCCACCACAATCCAGCGAAGACAACGAAGAAGAAGAAGAAGACGATGAGGATCAAGGTGTTCGTCGTGGTCAACGTCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>351 267 147 107 96 32</canonical_bands>
                <polymorphic_bands>618 147 107 96 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAGAGGATACTGTAGATGAGTC</pcr_primer_p1>
		<pcr_primer_p2>TCGTGATGTAGTGGTACTGC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CGAGAGGATACTGTAGATGAGTCGGAAGGCAAAGGAGATGAGGAAGAAGAAGCGCGGCCAGCACAGAAGAGGAATGTAAAGCAAGCGGAGAAACCGAGGAAGACGAGTGAGTTTTTTTGGGGAGGGCGGGGCTTGGTTGAGGTACTGTAGGTCTTTAAAAAGAAAAAAAAGAAAAAAAACGCCGTTTGGGTCGAACCAACAACCCCCAAAACTCAATTGATCGATAGCCCAGCGCAGTACCACTACATCACGA</canonical_amplicon>
		<polymorphic_amplicon>CGAGAGGATACTGTAGATGAGTCGGAAGGCAAAGGAGATGAGGAAGAAGAAGCGCGGCCAGCACAGAAGAGGAATGTAAAGCAAGCGGAGAAACCGAGGAAGACGAGTGAGTTTTTTTGGGGAGGGCGGGGCTTGGTTGAGGTACTGTAGGTCTTTKAAAAGAAAAAAAAGAAAAAAAACGCCGTTTGGGTCGAACCAACAACCCCCAAAACTCAATTGATCGATAGCCCAGCGCAGTACCACTACATCACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36021</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>178514</contig_pos>
        <strand></strand>
        <context>gtcaagtttg[A/G]gctaattttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACCCACTGGAGTGGTGAAAATCGATGCCGTACAACCACTGTCAAGTTTG</left_flank>
        <right_flank>GCTAATTTTTCTCGGCTCCTGTTCAAGATATCAAAACTGTGTTAACTGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCTGAAACAGAAGCCGCGGCGAGTAACGTCTTCTGCAAACCGAGGGTCTTCTTCTGGAGGAGCACGTGGCGGTGGATCGAGGGGTACTGTAGGACGACGTCCGATGAAACAGAGGGAGCGAGAGGATACTGTAGATGAGTCGGAAGGCAAAGGAGATGAGGAAGAAGAAGCGCGGCCAGCACAGAAGAGGAATGTAAAGCAAGCGGAGAAACCGAGGAAGACGAGTGAGTTTTTTTGGGGAGGGCGGGGCTTGGTTGAGGTACTGTAGGTCTTTAAAAAGAAAAAAAAGAAAAAAAACGCCGTTTGGGTCGAACCAACAACCCCCAAAACTCAATTGATCGATAGCCCAGCGCAGTACCACTACATCACGAGCTCACACGAATGGAAAAGGAGCGCATGGCGTATAGAAAGGGAGTGGTGGGTGGCGCCCCACAGGTCGCGCATTGGGACCCACTGGAGTGGTGAAAATCGATGCCGTACAACCACTGTCAAGTTTGAGCTAATTTTTCTCGGCTCCTGTTCAAGATATCAAAACTGTGTTAACTGATAAAATGTTTGTGATATTATGATAAACATCTTATCAGTTGACATATCCTTGATATCTTTTACATAAACCGAGATACGTTGGCTCAAAGTTAAAAGTTAGTATTCTAAGATTCTGAAATTCTTAAATTTTGAAAATTTTCCAGAACCCGCTCCACCACAATCCAGCGAAGACAACGAAGAAGAAGAAGAAGACGATGAGGATCAAGGTGTTCGTCGTGGTCAACGTCGTGCCGTTCCTCTGCGACGTGGCACTTCTGGAGCGTCACGTCTTCGTGGTCGAATGAATCAAGGACCACCACGTCGCCATTCTGGGTCCCAAATGACGTCTTCTAGACAATCTCCACGTGGAAATGATAGATTCTCGCCGCGAGGAGAGTCGCGTGGTGGAGGATCTCGCTACAGTAATCCTGCTGATCGGAATGACGATAGATTTGAGAATCATCGAAGAGGAG</canonical>
            <polymorphic>CATCTGAAACAGAAGCCGCGGCGAGTAACGTCTTCTGCAAACCGAGGGTCTTCTTCTGGAGGAGCACGTGGCGGTGGATCGAGGGGTACTGTAGGACGACGTCCGATGAAACAGAGGGAGCGAGAGGATACTGTAGATGAGTCGGAAGGCAAAGGAGATGAGGAAGAAGAAGCGCGGCCAGCACAGAAGAGGAATGTAAAGCAAGCGGAGAAACCGAGGAAGACGAGTGAGTTTTTTTGGGGAGGGCGGGGCTTGGTTGAGGTACTGTAGGTCTTTAAAAAGAAAAAAAAGAAAAAAAACGCCGTTTGGGTCGAACCAACAACCCCCAAAACTCAATTGATCGATAGCCCAGCGCAGTACCACTACATCACGAGCTCACACGAATGGAAAAGGAGCGCATGGCGTATAGAAAGGGAGTGGTGGGTGGCGCCCCACAGGTCGCGCATTGGGACCCACTGGAGTGGTGAAAATCGATGCCGTACAACCACTGTCAAGTTTGRGCTAATTTTTCTCGGCTCCTGTTCAAGATATCAAAACTGTGTTAACTGATAAAATGTTTGTGATATTATGATAAACATCTTATCAGTTGACATATCCTTGATATCTTTTACATAAACCGAGATACGTTGGCTCAAAGTTAAAAGTTAGTATTCTAAGATTCTGAAATTCTTAAATTTTGAAAATTTTCCAGAACCCGCTCCACCACAATCCAGCGAAGACAACGAAGAAGAAGAAGAAGACGATGAGGATCAAGGTGTTCGTCGTGGTCAACGTCGTGCCGTTCCTCTGCGACGTGGCACTTCTGGAGCGTCACGTCTTCGTGGTCGAATGAATCAAGGACCACCACGTCGCCATTCTGGGTCCCAAATGACGTCTTCTAGACAATCTCCACGTGGAAATGATAGATTCTCGCCGCGAGGAGAGTCGCGTGGTGGAGGATCTCGCTACAGTAATCCTGCTGATCGGAATGACGATAGATTTGAGAATCATCGAAGAGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>499 374 127</canonical_bands>
                <polymorphic_bands>626 374</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>370 162 127 115 96 74 27 15 14</canonical_bands>
                <polymorphic_bands>370 162 141 115 96 74 27 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGTATAGAAAGGGAGTGGT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAATTTAAGAATTTCAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>280</pcr_amplicon_size>
		<canonical_amplicon>GCGTATAGAAAGGGAGTGGTGGGTGGCGCCCCACAGGTCGCGCATTGGGACCCACTGGAGTGGTGAAAATCGATGCCGTACAACCACTGTCAAGTTTGAGCTAATTTTTCTCGGCTCCTGTTCAAGATATCAAAACTGTGTTAACTGATAAAATGTTTGTGATATTATGATAAACATCTTATCAGTTGACATATCCTTGATATCTTTTACATAAACCGAGATACGTTGGCTCAAAGTTAAAAGTTAGTATTCTAAGATTCTGAAATTCTTAAATTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GCGTATAGAAAGGGAGTGGTGGGTGGCGCCCCACAGGTCGCGCATTGGGACCCACTGGAGTGGTGAAAATCGATGCCGTACAACCACTGTCAAGTTTGRGCTAATTTTTCTCGGCTCCTGTTCAAGATATCAAAACTGTGTTAACTGATAAAATGTTTGTGATATTATGATAAACATCTTATCAGTTGACATATCCTTGATATCTTTTACATAAACCGAGATACGTTGGCTCAAAGTTAAAAGTTAGTATTCTAAGATTCTGAAATTCTTAAATTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36022</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>178544</contig_pos>
        <strand></strand>
        <context>tgttcaagat[A/T]tcaaaactgt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TACAACCACTGTCAAGTTTGAGCTAATTTTTCTCGGCTCCTGTTCAAGAT</left_flank>
        <right_flank>TCAAAACTGTGTTAACTGATAAAATGTTTGTGATATTATGATAAACATCT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTCTGCAAACCGAGGGTCTTCTTCTGGAGGAGCACGTGGCGGTGGATCGAGGGGTACTGTAGGACGACGTCCGATGAAACAGAGGGAGCGAGAGGATACTGTAGATGAGTCGGAAGGCAAAGGAGATGAGGAAGAAGAAGCGCGGCCAGCACAGAAGAGGAATGTAAAGCAAGCGGAGAAACCGAGGAAGACGAGTGAGTTTTTTTGGGGAGGGCGGGGCTTGGTTGAGGTACTGTAGGTCTTTAAAAAGAAAAAAAAGAAAAAAAACGCCGTTTGGGTCGAACCAACAACCCCCAAAACTCAATTGATCGATAGCCCAGCGCAGTACCACTACATCACGAGCTCACACGAATGGAAAAGGAGCGCATGGCGTATAGAAAGGGAGTGGTGGGTGGCGCCCCACAGGTCGCGCATTGGGACCCACTGGAGTGGTGAAAATCGATGCCGTACAACCACTGTCAAGTTTGAGCTAATTTTTCTCGGCTCCTGTTCAAGATATCAAAACTGTGTTAACTGATAAAATGTTTGTGATATTATGATAAACATCTTATCAGTTGACATATCCTTGATATCTTTTACATAAACCGAGATACGTTGGCTCAAAGTTAAAAGTTAGTATTCTAAGATTCTGAAATTCTTAAATTTTGAAAATTTTCCAGAACCCGCTCCACCACAATCCAGCGAAGACAACGAAGAAGAAGAAGAAGACGATGAGGATCAAGGTGTTCGTCGTGGTCAACGTCGTGCCGTTCCTCTGCGACGTGGCACTTCTGGAGCGTCACGTCTTCGTGGTCGAATGAATCAAGGACCACCACGTCGCCATTCTGGGTCCCAAATGACGTCTTCTAGACAATCTCCACGTGGAAATGATAGATTCTCGCCGCGAGGAGAGTCGCGTGGTGGAGGATCTCGCTACAGTAATCCTGCTGATCGGAATGACGATAGATTTGAGAATCATCGAAGAGGAGTGATTCGTGGAGCATCTAGAGGAACTTCTG</canonical>
            <polymorphic>TCTTCTGCAAACCGAGGGTCTTCTTCTGGAGGAGCACGTGGCGGTGGATCGAGGGGTACTGTAGGACGACGTCCGATGAAACAGAGGGAGCGAGAGGATACTGTAGATGAGTCGGAAGGCAAAGGAGATGAGGAAGAAGAAGCGCGGCCAGCACAGAAGAGGAATGTAAAGCAAGCGGAGAAACCGAGGAAGACGAGTGAGTTTTTTTGGGGAGGGCGGGGCTTGGTTGAGGTACTGTAGGTCTTTAAAAAGAAAAAAAAGAAAAAAAACGCCGTTTGGGTCGAACCAACAACCCCCAAAACTCAATTGATCGATAGCCCAGCGCAGTACCACTACATCACGAGCTCACACGAATGGAAAAGGAGCGCATGGCGTATAGAAAGGGAGTGGTGGGTGGCGCCCCACAGGTCGCGCATTGGGACCCACTGGAGTGGTGAAAATCGATGCCGTACAACCACTGTCAAGTTTGAGCTAATTTTTCTCGGCTCCTGTTCAAGATWTCAAAACTGTGTTAACTGATAAAATGTTTGTGATATTATGATAAACATCTTATCAGTTGACATATCCTTGATATCTTTTACATAAACCGAGATACGTTGGCTCAAAGTTAAAAGTTAGTATTCTAAGATTCTGAAATTCTTAAATTTTGAAAATTTTCCAGAACCCGCTCCACCACAATCCAGCGAAGACAACGAAGAAGAAGAAGAAGACGATGAGGATCAAGGTGTTCGTCGTGGTCAACGTCGTGCCGTTCCTCTGCGACGTGGCACTTCTGGAGCGTCACGTCTTCGTGGTCGAATGAATCAAGGACCACCACGTCGCCATTCTGGGTCCCAAATGACGTCTTCTAGACAATCTCCACGTGGAAATGATAGATTCTCGCCGCGAGGAGAGTCGCGTGGTGGAGGATCTCGCTACAGTAATCCTGCTGATCGGAATGACGATAGATTTGAGAATCATCGAAGAGGAGTGATTCGTGGAGCATCTAGAGGAACTTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>499 428 73</canonical_bands>
                <polymorphic_bands>572 428</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGTATAGAAAGGGAGTGGT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAATTTAAGAATTTCAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>280</pcr_amplicon_size>
		<canonical_amplicon>GCGTATAGAAAGGGAGTGGTGGGTGGCGCCCCACAGGTCGCGCATTGGGACCCACTGGAGTGGTGAAAATCGATGCCGTACAACCACTGTCAAGTTTGAGCTAATTTTTCTCGGCTCCTGTTCAAGATATCAAAACTGTGTTAACTGATAAAATGTTTGTGATATTATGATAAACATCTTATCAGTTGACATATCCTTGATATCTTTTACATAAACCGAGATACGTTGGCTCAAAGTTAAAAGTTAGTATTCTAAGATTCTGAAATTCTTAAATTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GCGTATAGAAAGGGAGTGGTGGGTGGCGCCCCACAGGTCGCGCATTGGGACCCACTGGAGTGGTGAAAATCGATGCCGTACAACCACTGTCAAGTTTGAGCTAATTTTTCTCGGCTCCTGTTCAAGATWTCAAAACTGTGTTAACTGATAAAATGTTTGTGATATTATGATAAACATCTTATCAGTTGACATATCCTTGATATCTTTTACATAAACCGAGATACGTTGGCTCAAAGTTAAAAGTTAGTATTCTAAGATTCTGAAATTCTTAAATTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36023</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>235548</contig_pos>
        <strand>+</strand>
        <context>GACAGATTGC[A/G]ACCAATTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCACACCACAGCTCCTTCAGAATTCTTCCTTGCTCATCTCGACAGATTGC</left_flank>
        <right_flank>ACCAATTTTCCATCCTCCATCATAACTAGAATATTCGTTGCTTCTGATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATATCTTTCAGGGAAATGAGATAATTAAGCTCAAAGTTGACGAGAACTGTGCAATTTTTCTGAAAAATTGATTTGCAATTTTTGAAGTTCATAGTTTTCGAATTTCCCGATTTTTTCCAAGTTTTGTACTCTTGAATTCTAAAATTTTTTATCTTTTTCGAAATTATGATTCAAAATCTCAAAATCTAAGAATCCAAAGAATCCCGGGATGTCAGATAGTCAGAATTTCGGAATTTCAGAATATCAGAATCTCAGAATCTCAAAATATCAGAATTTAACAATTTTAAAGTTTCAGAATCTCAGAATCTCAGAATCCCGGAATCTCTTGATTGTCAGAATTTCCGAATTTCTGAATTCCAGAATTTCGGGATTTCCAAATCTCAGATTTTCAGAAATTAAGAGTTCCAGCATTTCAGAATCTCTAAAATCTCTAAAATCTCACCTGTCCTCACACCACAGCTCCTTCAGAATTCTTCCTTGCTCATCTCGACAGATTGCAACCAATTTTCCATCCTCCATCATAACTAGAATATTCGTTGCTTCTGATTCCAACTCCGGATTATACTCAACTCCTTGATGGAAAACTTCGATGAGTTCAAAATCCTCCAAATCCAAATAATACAACTCATTGCACAATGTGAATTTATTAAACACATGTATCAGTTTTCTCCCATTCACTTCTTCGACATATTTCGGGAGTAAATGCTCCTCCTCAACCTGATGAGCACACTCCGCACAATCAAAATCCTTGAAATTGCCATTTCCGCAATAAACGAAACGAGATTCCTTCAATCTGAGAGTGTTGTAGTATGCCACATAATATGTGCCTCTATGAACACAAAAATCCGTACGAGAATTCGTTTGGCGCAAGAAATATGGTTCCAGTTCGGGTTTTCCGGGATAACTGCAATGTGGGATTAGGGCATCCATCCATTCGCGATAGAGAACGTTTGATTCGGCGTTTTGGGGGTTATTTGGTTGGGCTGATGTGTTGCGAGC</canonical>
            <polymorphic>GATATCTTTCAGGGAAATGAGATAATTAAGCTCAAAGTTGACGAGAACTGTGCAATTTTTCTGAAAAATTGATTTGCAATTTTTGAAGTTCATAGTTTTCGAATTTCCCGATTTTTTCCAAGTTTTGTACTCTTGAATTCTAAAATTTTTTATCTTTTTCGAAATTATGATTCAAAATCTCAAAATCTAAGAATCCAAAGAATCCCGGGATGTCAGATAGTCAGAATTTCGGAATTTCAGAATATCAGAATCTCAGAATCTCAAAATATCAGAATTTAACAATTTTAAAGTTTCAGAATCTCAGAATCTCAGAATCCCGGAATCTCTTGATTGTCAGAATTTCCGAATTTCTGAATTCCAGAATTTCGGGATTTCCAAATCTCAGATTTTCAGAAATTAAGAGTTCCAGCATTTCAGAATCTCTAAAATCTCTAAAATCTCACCTGTCCTCACACCACAGCTCCTTCAGAATTCTTCCTTGCTCATCTCGACAGATTGCRACCAATTTTCCATCCTCCATCATAACTAGAATATTCGTTGCTTCTGATTCCAACTCCGGATTATACTCAACTCCTTGATGGAAAACTTCGATGAGTTCAAAATCCTCCAAATCCAAATAATACAACTCATTGCACAATGTGAATTTATTAAACACATGTATCAGTTTTCTCCCATTCACTTCTTCGACATATTTCGGGAGTAAATGCTCCTCCTCAACCTGATGAGCACACTCCGCACAATCAAAATCCTTGAAATTGCCATTTCCGCAATAAACGAAACGAGATTCCTTCAATCTGAGAGTGTTGTAGTATGCCACATAATATGTGCCTCTATGAACACAAAAATCCGTACGAGAATTCGTTTGGCGCAAGAAATATGGTTCCAGTTCGGGTTTTCCGGGATAACTGCAATGTGGGATTAGGGCATCCATCCATTCGCGATAGAGAACGTTTGATTCGGCGTTTTGGGGGTTATTTGGTTGGGCTGATGTGTTGCGAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>422 276 134 92 52 24</canonical_bands>
                <polymorphic_bands>556 276 92 52 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAAATCTAAGAATCCAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>GGAATCAGAAGCAACGAATA</pcr_primer_p2>
		<pcr_amplicon_size>372</pcr_amplicon_size>
		<canonical_amplicon>TCAAAATCTAAGAATCCAAAGAATCCCGGGATGTCAGATAGTCAGAATTTCGGAATTTCAGAATATCAGAATCTCAGAATCTCAAAATATCAGAATTTAACAATTTTAAAGTTTCAGAATCTCAGAATCTCAGAATCCCGGAATCTCTTGATTGTCAGAATTTCCGAATTTCTGAATTCCAGAATTTCGGGATTTCCAAATCTCAGATTTTCAGAAATTAAGAGTTCCAGCATTTCAGAATCTCTAAAATCTCTAAAATCTCACCTGTCCTCACACCACAGCTCCTTCAGAATTCTTCCTTGCTCATCTCGACAGATTGCAACCAATTTTCCATCCTCCATCATAACTAGAATATTCGTTGCTTCTGATTCC</canonical_amplicon>
		<polymorphic_amplicon>TCAAAATCTAAGAATCCAAAGAATCCCGGGATGTCAGATAGTCAGAATTTCGGAATTTCAGAATATCAGAATCTCAGAATCTCAAAATATCAGAATTTAACAATTTTAAAGTTTCAGAATCTCAGAATCTCAGAATCCCGGAATCTCTTGATTGTCAGAATTTCCGAATTTCTGAATTCCAGAATTTCGGGATTTCCAAATCTCAGATTTTCAGAAATTAAGAGTTCCAGCATTTCAGAATCTCTAAAATCTCTAAAATCTCACCTGTCCTCACACCACAGCTCCTTCAGAATTCTTCCTTGCTCATCTCGACAGATTGCRACCAATTTTCCATCCTCCATCATAACTAGAATATTCGTTGCTTCTGATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36024</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>248951</contig_pos>
        <strand>+</strand>
        <context>GTATTCTGCA[C/T]AGCTGGGAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTCTTGGCATGGATCACTTGAGTTTGAAGCGTTTTTGAGTATTCTGCA</left_flank>
        <right_flank>AGCTGGGAGATAACGATTTATTGGTTACGGTAGCTGCGCAAGATGTGCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATCGCTCATCTGCCCAAGTGGCAATTCCGGCACCATTTGCACTTTGACTGGCAAGGAGAGCCTCCATTTTCGAGGTCCAAGGATCTTATTGAAGCTTGCCGATCGCTTCCTATAATCCTCCTTGATTCTCTTGACGTCTAGCTCCGCCTTCTCCTCCATGATCCGTTTTCGGAGCTCTTTTGACCTCTTCTCCCGCCGTCGCTGATCCTTTAGAGTGGCCACTGGAACATTCTCAAACTTCTTAAAGATCTTCTCAACGGGACACAATTTCTCCATGATTAGATAGTTCATGTAGTTGATGGCGTAAACTTCGGAACCTTCGGAAGTGATTCTGGCCAAGCAAACAGTGTCTGGGACCTTTCCCGGATCGAATTTCAGCTCTTCCAGATAGACTTGCTTAAATCCATTGGGGGTCAGAATCCATTGCTCATCCACCAAAGTCACTCGATTCTTGGCATGGATCACTTGAGTTTGAAGCGTTTTTGAGTATTCTGCATAGCTGGGAGATAACGATTTATTGGTTACGGTAGCTGCGCAAGATGTGCAGATGCAGAAGAATCTTTGGAGTTTTTTGTCTTTGAGGATGAAGGCATGGTAGAGACCAGAGGATGGGATTAAGGCGCATAGGGTTAGGAAATGGTAGAGCGGGCAGAAGACAACTTTGAATTTGGGAAGGAGCTTGTTAAAGCTGAGCAATGCCGAGTCATCGGGGTCTCCAGAGTCTTTAGAGGCTTCAGGATCTTCTTCAGCAGGCCCATCATCCACCAAGGTCTTCACTTCAGCCTCCTTCATCGGTCCTCCGTACTTGCTGATCTTATAAAGTGGTCCTTGCTGATCCTTAGTGATTACAATGGTCCCATTATCCATTAAAATTGATCTATGACTCCTCAGAAAACCTTCAGAGGTTCCTCCTGAGGCTTCAGAATCTTCCAGAACCATCTGAACCAGTCCTCCAGTCCCCTTATCCAATCTATACTGCTCTTTTCGATTTGTAAAC</canonical>
            <polymorphic>CAAATCGCTCATCTGCCCAAGTGGCAATTCCGGCACCATTTGCACTTTGACTGGCAAGGAGAGCCTCCATTTTCGAGGTCCAAGGATCTTATTGAAGCTTGCCGATCGCTTCCTATAATCCTCCTTGATTCTCTTGACGTCTAGCTCCGCCTTCTCCTCCATGATCCGTTTTCGGAGCTCTTTTGACCTCTTCTCCCGCCGTCGCTGATCCTTTAGAGTGGCCACTGGAACATTCTCAAACTTCTTAAAGATCTTCTCAACGGGACACAATTTCTCCATGATTAGATAGTTCATGTAGTTGATGGCGTAAACTTCGGAACCTTCGGAAGTGATTCTGGCCAAGCAAACAGTGTCTGGGACCTTTCCCGGATCGAATTTCAGCTCTTCCAGATAGACTTGCTTAAATCCATTGGGGGTCAGAATCCATTGCTCATCCACCAAAGTCACTCGATTCTTGGCATGGATCACTTGAGTTTGAAGCGTTTTTGAGTATTCTGCAYAGCTGGGAGATAACGATTTATTGGTTACGGTAGCTGCGCAAGATGTGCAGATGCAGAAGAATCTTTGGAGTTTTTTGTCTTTGAGGATGAAGGCATGGTAGAGACCAGAGGATGGGATTAAGGCGCATAGGGTTAGGAAATGGTAGAGCGGGCAGAAGACAACTTTGAATTTGGGAAGGAGCTTGTTAAAGCTGAGCAATGCCGAGTCATCGGGGTCTCCAGAGTCTTTAGAGGCTTCAGGATCTTCTTCAGCAGGCCCATCATCCACCAAGGTCTTCACTTCAGCCTCCTTCATCGGTCCTCCGTACTTGCTGATCTTATAAAGTGGTCCTTGCTGATCCTTAGTGATTACAATGGTCCCATTATCCATTAAAATTGATCTATGACTCCTCAGAAAACCTTCAGAGGTTCCTCCTGAGGCTTCAGAATCTTCCAGAACCATCTGAACCAGTCCTCCAGTCCCCTTATCCAATCTATACTGCTCTTTTCGATTTGTAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTCAGCTCTTCCAGATAGAC</pcr_primer_p1>
		<pcr_primer_p2>CTTAATCCCATCCTCTGGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTTCAGCTCTTCCAGATAGACTTGCTTAAATCCATTGGGGGTCAGAATCCATTGCTCATCCACCAAAGTCACTCGATTCTTGGCATGGATCACTTGAGTTTGAAGCGTTTTTGAGTATTCTGCATAGCTGGGAGATAACGATTTATTGGTTACGGTAGCTGCGCAAGATGTGCAGATGCAGAAGAATCTTTGGAGTTTTTTGTCTTTGAGGATGAAGGCATGGTAGAGACCAGAGGATGGGATTAAG</canonical_amplicon>
		<polymorphic_amplicon>AATTTCAGCTCTTCCAGATAGACTTGCTTAAATCCATTGGGGGTCAGAATCCATTGCTCATCCACCAAAGTCACTCGATTCTTGGCATGGATCACTTGAGTTTGAAGCGTTTTTGAGTATTCTGCAYAGCTGGGAGATAACGATTTATTGGTTACGGTAGCTGCGCAAGATGTGCAGATGCAGAAGAATCTTTGGAGTTTTTTGTCTTTGAGGATGAAGGCATGGTAGAGACCAGAGGATGGGATTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36025</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>254892</contig_pos>
        <strand>+</strand>
        <context>TCACCGTGCC[A/C]GAAACAACAC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCCGAATTTTATTGTTTGATTTGCTTTGAAAATTTACAATCACCGTGCC</left_flank>
        <right_flank>GAAACAACACTCGGTCGTCGAGTTTTGTGTCGTTAAAGAGGTCAAAAAGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATCTGTAATCAGTCAAAATTAGCCAATTTTCTACTGAAAATCGACAAAAAATACGACAAAAATGTTGCGAATCAGCTCAAAATTGGTCAAAATCGACTTAAATTTATTAAAAACATCGAAAAAAAATCGCTGAAATTCAGCCAAAATTTGTCCAGAAACGCCCAAATTAAATCTAATGGGTATATGCTGAAAATGGCCAATTCCAAACGAATTTTGGCTGAATTTCAGCGTATACCTGAAAATTGGCAGAAAATCAGCTCAAAAATGGTCAAAATTCGCTCAAATCGCCTGGAAAAATGACTTGAAAATCGTCTCGGAGCCAAAATTTTCATAAAAATCGATATTTGTTGCAGGTCTCCTCGAACACCTACTTCTCGAACATGGCATCTGTCGCTCGTTCTCTCTACATGCGTAGCCGTGTTCTTCCCCGATCTCATATCTATTTTCAATCCGAATTTTATTGTTTGATTTGCTTTGAAAATTTACAATCACCGTGCCCGAAACAACACTCGGTCGTCGAGTTTTGTGTCGTTAAAGAGGTCAAAAAGTACGATTTTGACTGATTTTTGAGCTAAAAATCGATAATTTTGAAGCTAAAATCCCCATAAAAGCGGGGTTCTGGCACAGTCTAGACTTTTTAGAGCCCAAAAATCGATAATTTGAAGCTAGAAAATCCGTTTTCACTGATTTTCGTCGATTTAGGGATTTTTGAAAAATTCGATTTTTTTTTGGGAATTTTTATGTATTTTAGTCGATTTTTCTCGTTTTTCGTCGAGTTGTTCTGTAATTTGTACACCAAAAAAGTTGAAAATTTTGAAAATTCAAAAGTGGGCGGAGCTTAGGTCCGTTAGCGATTTTTCGAATTTTTGGTTTAAAAAAAGGTTTTTTCAATCGAAATTTTCTTAAATCCCGTTAAGTTGAAAATGTCCAAAATCCAAAAATTCAAACTTTTTGAAAATTCCAAAATTCGATAATTTCAAAAATCTGGAAATTCAAATT</canonical>
            <polymorphic>GATCTGTAATCAGTCAAAATTAGCCAATTTTCTACTGAAAATCGACAAAAAATACGACAAAAATGTTGCGAATCAGCTCAAAATTGGTCAAAATCGACTTAAATTTATTAAAAACATCGAAAAAAAATCGCTGAAATTCAGCCAAAATTTGTCCAGAAACGCCCAAATTAAATCTAATGGGTATATGCTGAAAATGGCCAATTCCAAACGAATTTTGGCTGAATTTCAGCGTATACCTGAAAATTGGCAGAAAATCAGCTCAAAAATGGTCAAAATTCGCTCAAATCGCCTGGAAAAATGACTTGAAAATCGTCTCGGAGCCAAAATTTTCATAAAAATCGATATTTGTTGCAGGTCTCCTCGAACACCTACTTCTCGAACATGGCATCTGTCGCTCGTTCTCTCTACATGCGTAGCCGTGTTCTTCCCCGATCTCATATCTATTTTCAATCCGAATTTTATTGTTTGATTTGCTTTGAAAATTTACAATCACCGTGCCMGAAACAACACTCGGTCGTCGAGTTTTGTGTCGTTAAAGAGGTCAAAAAGTACGATTTTGACTGATTTTTGAGCTAAAAATCGATAATTTTGAAGCTAAAATCCCCATAAAAGCGGGGTTCTGGCACAGTCTAGACTTTTTAGAGCCCAAAAATCGATAATTTGAAGCTAGAAAATCCGTTTTCACTGATTTTCGTCGATTTAGGGATTTTTGAAAAATTCGATTTTTTTTTGGGAATTTTTATGTATTTTAGTCGATTTTTCTCGTTTTTCGTCGAGTTGTTCTGTAATTTGTACACCAAAAAAGTTGAAAATTTTGAAAATTCAAAAGTGGGCGGAGCTTAGGTCCGTTAGCGATTTTTCGAATTTTTGGTTTAAAAAAAGGTTTTTTCAATCGAAATTTTCTTAAATCCCGTTAAGTTGAAAATGTCCAAAATCCAAAAATTCAAACTTTTTGAAAATTCCAAAATTCGATAATTTCAAAAATCTGGAAATTCAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>499 354 147</canonical_bands>
                <polymorphic_bands>646 354</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGATCTCATATCTATTTTCAAT</pcr_primer_p1>
		<pcr_primer_p2>CGGATTTTCTAGCTTCAAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCGATCTCATATCTATTTTCAATCCGAATTTTATTGTTTGATTTGCTTTGAAAATTTACAATCACCGTGCCCGAAACAACACTCGGTCGTCGAGTTTTGTGTCGTTAAAGAGGTCAAAAAGTACGATTTTGACTGATTTTTGAGCTAAAAATCGATAATTTTGAAGCTAAAATCCCCATAAAAGCGGGGTTCTGGCACAGTCTAGACTTTTTAGAGCCCAAAAATCGATAATTTGAAGCTAGAAAATCCG</canonical_amplicon>
		<polymorphic_amplicon>CCGATCTCATATCTATTTTCAATCCGAATTTTATTGTTTGATTTGCTTTGAAAATTTACAATCACCGTGCCMGAAACAACACTCGGTCGTCGAGTTTTGTGTCGTTAAAGAGGTCAAAAAGTACGATTTTGACTGATTTTTGAGCTAAAAATCGATAATTTTGAAGCTAAAATCCCCATAAAAGCGGGGTTCTGGCACAGTCTAGACTTTTTAGAGCCCAAAAATCGATAATTTGAAGCTAGAAAATCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36026</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>259866</contig_pos>
        <strand></strand>
        <context>tctcgatttt[C/T]gtcgatttta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAACTGAAAACCGAAAAAGTCGATTTTTCGTGGACTTTTCTCGATTTT</left_flank>
        <right_flank>GTCGATTTTAAGTCGACGCAAATACGACAAAAGTCGATTCTTGTCGATTC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGTCGATTGTTGACAATCGACAAAAATCGTCAAAATCGGTGTCGATTTCGTCGACTCGATCAAAAATCGATATTCTAAAAGTCGACAAAAAATTGACTTTTCAAAAGTCGATGAGATTGAAAATCGATAAGAATCGATTTTTGTCGATTTTGAATCGACTCAAAATCGACAAGAACCGACTAAAAATCGATTTTTAATCGACTTTCATGTCCGAGAGGATTACAAGGCCGGTGACCTAGAAACTGTCTGTTTTTTTGTTGTTGTGCCTGTTTGAAACTGGCAGTGTGCTACATTTTGATATGGTGGCCTAACTTTTGCAAATTTGCTTTTCTAGGCCACCACTTCAAAATGACCTAAAAATGTCCTAACATGATTCTGTTGTGTTTTTAGGCCATTTTGACATGGTGGCCTAAGTTTTGCAAGTTGAGTTTTCTAGGCCACCACGAGTTCAACTGAAAACCGAAAAAGTCGATTTTTCGTGGACTTTTCTCGATTTTCGTCGATTTTAAGTCGACGCAAATACGACAAAAGTCGATTCTTGTCGATTCTTGTCGACGTTCGTCGACGCAAAATCGACAACGGAAAGTTCGATTTTCATCGACAAATAGCCTTGTCGAATTGTTGAATGTCGATTGTGTCGAATTCAAAGTCGACAAAAAATCGTCGATTTTCGAGTCGACTCGGCACTCTACTCGCGGAGCCCTTTTTGGACCCTGTTTGACCCTTTTTTTTTGCCACTTTTTTTTTCAAATTCTCTCTATTTTACCCGTTTTCAGCTGCCAAAACAGCCCAGGAACACTATTTTCCCCTTTTTTTGCCCTAAAAATCGGTTTTCAGAGTTTTCGACCTGGTTTTTAGCTTTTAGATCGTTGAAAATCCTCTTTTTTAGCATAGTTTCGACTATAAATGCTTTAAAAAGCTCGAAAATTAAGGATTTTTCCCCTTTTGCACCTATTTTTATGTTATTTTTTTTAACTCAATTTTCATGGAATTTTTCC</canonical>
            <polymorphic>TGTGTCGATTGTTGACAATCGACAAAAATCGTCAAAATCGGTGTCGATTTCGTCGACTCGATCAAAAATCGATATTCTAAAAGTCGACAAAAAATTGACTTTTCAAAAGTCGATGAGATTGAAAATCGATAAGAATCGATTTTTGTCGATTTTGAATCGACTCAAAATCGACAAGAACCGACTAAAAATCGATTTTTAATCGACTTTCATGTCCGAGAGGATTACAAGGCCGGTGACCTAGAAACTGTCTGTTTTTTTGTTGTTGTGCCTGTTTGAAACTGGCAGTGTGCTACATTTTGATATGGTGGCCTAACTTTTGCAAATTTGCTTTTCTAGGCCACCACTTCAAAATGACCTAAAAATGTCCTAACATGATTCTGTTGTGTTTTTAGGCCATTTTGACATGGTGGCCTAAGTTTTGCAAGTTGAGTTTTCTAGGCCACCACGAGTTCAACTGAAAACCGAAAAAGTCGATTTTTCGTGGACTTTTCTCGATTTTYGTCGATTTTAAGTCGACGCAAATACGACAAAAGTCGATTCTTGTCGATTCTTGTCGACGTTCGTCGACGCAAAATCGACAACGGAAAGTTCGATTTTCATCGACAAATAGCCTTGTCGAATTGTTGAATGTCGATTGTGTCGAATTCAAAGTCGACAAAAAATCGTCGATTTTCGAGTCGACTCGGCACTCTACTCGCGGAGCCCTTTTTGGACCCTGTTTGACCCTTTTTTTTTGCCACTTTTTTTTTCAAATTCTCTCTATTTTACCCGTTTTCAGCTGCCAAAACAGCCCAGGAACACTATTTTCCCCTTTTTTTGCCCTAAAAATCGGTTTTCAGAGTTTTCGACCTGGTTTTTAGCTTTTAGATCGTTGAAAATCCTCTTTTTTAGCATAGTTTCGACTATAAATGCTTTAAAAAGCTCGAAAATTAAGGATTTTTCCCCTTTTGCACCTATTTTTATGTTATTTTTTTTAACTCAATTTTCATGGAATTTTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>449 332 102 55 41 14 7</canonical_bands>
                <polymorphic_bands>463 332 102 55 41 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATAGTGCTGTGTCGATTGTT</pcr_primer_p1>
		<pcr_primer_p2>ACGGGTAAAATAGAGAGAATTTG</pcr_primer_p2>
		<pcr_amplicon_size>780</pcr_amplicon_size>
		<canonical_amplicon>TCGTCGATTTTAAGTCGACGCAAATACGACAAAAGTCGATTCTTGTCGATTCTTGTCGACGTTCGTCGACGCAAAATCGACAACGGAAAGTTCGATTTTCATCGACAAATAGCCTTGTCGAATTGTTGAATGTCGATTGTGTCGAATTCAAAGTCGACAAAAAATCGTCGATTTTCGAGTCGACTCGGCACTCTACTCGCGGAGCCCTTTTTGGACCCTGTTTGACCCTTTTTTTTTGCCACTTTTTTTTTCAAATTCTCTCTATTTTACCCGT</canonical_amplicon>
		<polymorphic_amplicon>TYGTCGATTTTAAGTCGACGCAAATACGACAAAAGTCGATTCTTGTCGATTCTTGTCGACGTTCGTCGACGCAAAATCGACAACGGAAAGTTCGATTTTCATCGACAAATAGCCTTGTCGAATTGTTGAATGTCGATTGTGTCGAATTCAAAGTCGACAAAAAATCGTCGATTTTCGAGTCGACTCGGCACTCTACTCGCGGAGCCCTTTTTGGACCCTGTTTGACCCTTTTTTTTTGCCACTTTTTTTTTCAAATTCTCTCTATTTTACCCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36027</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>261782</contig_pos>
        <strand>+</strand>
        <context>ggtAAAAAAA[A/T]TATTTTTTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGGCTCAAAGTCCGGGTGGCGTTCTATTAGAATGGTTACGGTAAAAAAA</left_flank>
        <right_flank>TATTTTTTACAATTTTTTCAGGTTTATCCGAGAATCAGCAATAATAGAAG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTAGAAAATCAGCAAGAATAAAAGAATCTGGAAAAGAGATTTGAATTTCTGATCTAAAAAGTTGCATTTTTCCAGATTTTCAGTTTTTTGAAAAATCATTTTCCACTCATTTTTAGTGAAAAAGGCTTACTTTGAAGACTACGAAAGATGTTCAGAATTTTTCAATTCGTCTGAAAATTTCAGAGTATACTAAACAAAACGAGAGCTTAAATTTTGTTGTTGACAACTTTTTGATATCTCTGATACAAATCAAGATAATAGAGCTCAAAGGAAACAAGCTTCCTTGGCGCCCCTTCTCTATCAGCACTCCTGGTCACGTTGAGCTCAATTATCTCGGTTCCTATAAGAGATAACCAACACTTGTCAATTAATAAAATGTTGCTGATATCATGATAATCATTTTATCAGTTGACAACTTTTTGATATCATTCAAAAGAAGTGAGGTATATAGGCTCAAAGTCCGGGTGGCGTTCTATTAGAATGGTTACGGTAAAAAAAATATTTTTTACAATTTTTTCAGGTTTATCCGAGAATCAGCAATAATAGAAGAATCTGGAAAGAAATACATAACAAATCCATCCTTGCATTTTTTTAGATTTTCATATTCCTAAAATTCGTTTTCAACTCATTTATCCTTTTTGGTGAAAAATCACCTAATTTTGGAAGACTACAAAAGTGGTTCAGCATTTTTCAATTTGTCTGAAAATTGCATATTATACTAAACAAAACTAGAGCTTTAATTTAATAGTTGACAACTTTTTCGGAAAATTTCATCTAAATGAGATAGGTGGTCTCGAAGTGTCCTGGCACTTCACTCGGCACGCAATCTGGCATTATTAGAGCGTCATTCCATACTTTAACTTCAAGCTTTTAAGTTAAAACTATCTCGGCTTTTTTGAGAGATATCAGAAATCAATCAACTGATAAAATGTTTATTATAATGCCATCTACATTTTATCAGTTGGAAACTTTTTGATATCTCTTATAGGGAGCAAGATA</canonical>
            <polymorphic>CTTAGAAAATCAGCAAGAATAAAAGAATCTGGAAAAGAGATTTGAATTTCTGATCTAAAAAGTTGCATTTTTCCAGATTTTCAGTTTTTTGAAAAATCATTTTCCACTCATTTTTAGTGAAAAAGGCTTACTTTGAAGACTACGAAAGATGTTCAGAATTTTTCAATTCGTCTGAAAATTTCAGAGTATACTAAACAAAACGAGAGCTTAAATTTTGTTGTTGACAACTTTTTGATATCTCTGATACAAATCAAGATAATAGAGCTCAAAGGAAACAAGCTTCCTTGGCGCCCCTTCTCTATCAGCACTCCTGGTCACGTTGAGCTCAATTATCTCGGTTCCTATAAGAGATAACCAACACTTGTCAATTAATAAAATGTTGCTGATATCATGATAATCATTTTATCAGTTGACAACTTTTTGATATCATTCAAAAGAAGTGAGGTATATAGGCTCAAAGTCCGGGTGGCGTTCTATTAGAATGGTTACGGTAAAAAAAWTATTTTTTACAATTTTTTCAGGTTTATCCGAGAATCAGCAATAATAGAAGAATCTGGAAAGAAATACATAACAAATCCATCCTTGCATTTTTTTAGATTTTCATATTCCTAAAATTCGTTTTCAACTCATTTATCCTTTTTGGTGAAAAATCACCTAATTTTGGAAGACTACAAAAGTGGTTCAGCATTTTTCAATTTGTCTGAAAATTGCATATTATACTAAACAAAACTAGAGCTTTAATTTAATAGTTGACAACTTTTTCGGAAAATTTCATCTAAATGAGATAGGTGGTCTCGAAGTGTCCTGGCACTTCACTCGGCACGCAATCTGGCATTATTAGAGCGTCATTCCATACTTTAACTTCAAGCTTTTAAGTTAAAACTATCTCGGCTTTTTTGAGAGATATCAGAAATCAATCAACTGATAAAATGTTTATTATAATGCCATCTACATTTTATCAGTTGGAAACTTTTTGATATCTCTTATAGGGAGCAAGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCCAGATTTTCAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CCAGATTCTTCTATTATTGCTGAT</pcr_primer_p2>
		<pcr_amplicon_size>491</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCCAGATTTTCAGTTTTTTGAAAAATCATTTTCCACTCATTTTTAGTGAAAAAGGCTTACTTTGAAGACTACGAAAGATGTTCAGAATTTTTCAATTCGTCTGAAAATTTCAGAGTATACTAAACAAAACGAGAGCTTAAATTTTGTTGTTGACAACTTTTTGATATCTCTGATACAAATCAAGATAATAGAGCTCAAAGGAAACAAGCTTCCTTGGCGCCCCTTCTCTATCAGCACTCCTGGTCACGTTGAGCTCAATTATCTCGGTTCCTATAAGAGATAACCAACACTTGTCAATTAATAAAATGTTGCTGATATCATGATAATCATTTTATCAGTTGACAACTTTTTGATATCATTCAAAAGAAGTGAGGTATATAGGCTCAAAGTCCGGGTGGCGTTCTATTAGAATGGTTACGGTAAAAAAAATATTTTTTACAATTTTTTCAGGTTTATCCGAGAATCAGCAATAATAGAAGAATCTGG</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCCAGATTTTCAGTTTTTTGAAAAATCATTTTCCACTCATTTTTAGTGAAAAAGGCTTACTTTGAAGACTACGAAAGATGTTCAGAATTTTTCAATTCGTCTGAAAATTTCAGAGTATACTAAACAAAACGAGAGCTTAAATTTTGTTGTTGACAACTTTTTGATATCTCTGATACAAATCAAGATAATAGAGCTCAAAGGAAACAAGCTTCCTTGGCGCCCCTTCTCTATCAGCACTCCTGGTCACGTTGAGCTCAATTATCTCGGTTCCTATAAGAGATAACCAACACTTGTCAATTAATAAAATGTTGCTGATATCATGATAATCATTTTATCAGTTGACAACTTTTTGATATCATTCAAAAGAAGTGAGGTATATAGGCTCAAAGTCCGGGTGGCGTTCTATTAGAATGGTTACGGTAAAAAAAWTATTTTTTACAATTTTTTCAGGTTTATCCGAGAATCAGCAATAATAGAAGAATCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36028</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>261981</contig_pos>
        <strand></strand>
        <context>ttttcaattt[G/A]tctgaaaatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATCACCTAATTTTGGAAGACTACAAAAGTGGTTCAGCATTTTTCAATTT</left_flank>
        <right_flank>TCTGAAAATTGCATATTATACTAAACAAAACTAGAGCTTTAATTTAATAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGAGAGCTTAAATTTTGTTGTTGACAACTTTTTGATATCTCTGATACAAATCAAGATAATAGAGCTCAAAGGAAACAAGCTTCCTTGGCGCCCCTTCTCTATCAGCACTCCTGGTCACGTTGAGCTCAATTATCTCGGTTCCTATAAGAGATAACCAACACTTGTCAATTAATAAAATGTTGCTGATATCATGATAATCATTTTATCAGTTGACAACTTTTTGATATCATTCAAAAGAAGTGAGGTATATAGGCTCAAAGTCCGGGTGGCGTTCTATTAGAATGGTTACGGTAAAAAAAATATTTTTTACAATTTTTTCAGGTTTATCCGAGAATCAGCAATAATAGAAGAATCTGGAAAGAAATACATAACAAATCCATCCTTGCATTTTTTTAGATTTTCATATTCCTAAAATTCGTTTTCAACTCATTTATCCTTTTTGGTGAAAAATCACCTAATTTTGGAAGACTACAAAAGTGGTTCAGCATTTTTCAATTTGTCTGAAAATTGCATATTATACTAAACAAAACTAGAGCTTTAATTTAATAGTTGACAACTTTTTCGGAAAATTTCATCTAAATGAGATAGGTGGTCTCGAAGTGTCCTGGCACTTCACTCGGCACGCAATCTGGCATTATTAGAGCGTCATTCCATACTTTAACTTCAAGCTTTTAAGTTAAAACTATCTCGGCTTTTTTGAGAGATATCAGAAATCAATCAACTGATAAAATGTTTATTATAATGCCATCTACATTTTATCAGTTGGAAACTTTTTGATATCTCTTATAGGGAGCAAGATAAATTGAGCTCAAAGTTAGCAAGTGTTGTGGTGACGCCAGCCGGCGGCGCGCAATTAAAGTTCAATTATCTCAGTTCCTATGAGAGCTATAAACAATTTGTCAACTGATAAAATGTAGATGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATATCTTACGAACCCAGATAATTGAGCTCAAAGTTTGCAAA</canonical>
            <polymorphic>ACGAGAGCTTAAATTTTGTTGTTGACAACTTTTTGATATCTCTGATACAAATCAAGATAATAGAGCTCAAAGGAAACAAGCTTCCTTGGCGCCCCTTCTCTATCAGCACTCCTGGTCACGTTGAGCTCAATTATCTCGGTTCCTATAAGAGATAACCAACACTTGTCAATTAATAAAATGTTGCTGATATCATGATAATCATTTTATCAGTTGACAACTTTTTGATATCATTCAAAAGAAGTGAGGTATATAGGCTCAAAGTCCGGGTGGCGTTCTATTAGAATGGTTACGGTAAAAAAAATATTTTTTACAATTTTTTCAGGTTTATCCGAGAATCAGCAATAATAGAAGAATCTGGAAAGAAATACATAACAAATCCATCCTTGCATTTTTTTAGATTTTCATATTCCTAAAATTCGTTTTCAACTCATTTATCCTTTTTGGTGAAAAATCACCTAATTTTGGAAGACTACAAAAGTGGTTCAGCATTTTTCAATTTRTCTGAAAATTGCATATTATACTAAACAAAACTAGAGCTTTAATTTAATAGTTGACAACTTTTTCGGAAAATTTCATCTAAATGAGATAGGTGGTCTCGAAGTGTCCTGGCACTTCACTCGGCACGCAATCTGGCATTATTAGAGCGTCATTCCATACTTTAACTTCAAGCTTTTAAGTTAAAACTATCTCGGCTTTTTTGAGAGATATCAGAAATCAATCAACTGATAAAATGTTTATTATAATGCCATCTACATTTTATCAGTTGGAAACTTTTTGATATCTCTTATAGGGAGCAAGATAAATTGAGCTCAAAGTTAGCAAGTGTTGTGGTGACGCCAGCCGGCGGCGCGCAATTAAAGTTCAATTATCTCAGTTCCTATGAGAGCTATAAACAATTTGTCAACTGATAAAATGTAGATGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATATCTTACGAACCCAGATAATTGAGCTCAAAGTTTGCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCTAAAATTCGTTTTCAACT</pcr_primer_p1>
		<pcr_primer_p2>TATGGAATGACGCTCTAATAATG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTCCTAAAATTCGTTTTCAACTCATTTATCCTTTTTGGTGAAAAATCACCTAATTTTGGAAGACTACAAAAGTGGTTCAGCATTTTTCAATTTGTCTGAAAATTGCATATTATACTAAACAAAACTAGAGCTTTAATTTAATAGTTGACAACTTTTTCGGAAAATTTCATCTAAATGAGATAGGTGGTCTCGAAGTGTCCTGGCACTTCACTCGGCACGCAATCTGGCATTATTAGAGCGTCATTCCATA</canonical_amplicon>
		<polymorphic_amplicon>ATTCCTAAAATTCGTTTTCAACTCATTTATCCTTTTTGGTGAAAAATCACCTAATTTTGGAAGACTACAAAAGTGGTTCAGCATTTTTCAATTTRTCTGAAAATTGCATATTATACTAAACAAAACTAGAGCTTTAATTTAATAGTTGACAACTTTTTCGGAAAATTTCATCTAAATGAGATAGGTGGTCTCGAAGTGTCCTGGCACTTCACTCGGCACGCAATCTGGCATTATTAGAGCGTCATTCCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36029</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>262097</contig_pos>
        <strand>+</strand>
        <context>ctGGCACTTC[A/G]CTCGGCACGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAATTTCATCTAAATGAGATAGGTGGTCTCGAAGTGTCCTGGCACTTC</left_flank>
        <right_flank>CTCGGCACGCAATCTGGCATTATTAGAGCGTCATTCCATACTTTAACTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACGTTGAGCTCAATTATCTCGGTTCCTATAAGAGATAACCAACACTTGTCAATTAATAAAATGTTGCTGATATCATGATAATCATTTTATCAGTTGACAACTTTTTGATATCATTCAAAAGAAGTGAGGTATATAGGCTCAAAGTCCGGGTGGCGTTCTATTAGAATGGTTACGGTAAAAAAAATATTTTTTACAATTTTTTCAGGTTTATCCGAGAATCAGCAATAATAGAAGAATCTGGAAAGAAATACATAACAAATCCATCCTTGCATTTTTTTAGATTTTCATATTCCTAAAATTCGTTTTCAACTCATTTATCCTTTTTGGTGAAAAATCACCTAATTTTGGAAGACTACAAAAGTGGTTCAGCATTTTTCAATTTGTCTGAAAATTGCATATTATACTAAACAAAACTAGAGCTTTAATTTAATAGTTGACAACTTTTTCGGAAAATTTCATCTAAATGAGATAGGTGGTCTCGAAGTGTCCTGGCACTTCACTCGGCACGCAATCTGGCATTATTAGAGCGTCATTCCATACTTTAACTTCAAGCTTTTAAGTTAAAACTATCTCGGCTTTTTTGAGAGATATCAGAAATCAATCAACTGATAAAATGTTTATTATAATGCCATCTACATTTTATCAGTTGGAAACTTTTTGATATCTCTTATAGGGAGCAAGATAAATTGAGCTCAAAGTTAGCAAGTGTTGTGGTGACGCCAGCCGGCGGCGCGCAATTAAAGTTCAATTATCTCAGTTCCTATGAGAGCTATAAACAATTTGTCAACTGATAAAATGTAGATGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATATCTTACGAACCCAGATAATTGAGCTCAAAGTTTGCAAACATTATTTTTCAATGTACTAAGATAAACATATTTTTAGAGCATAGAAAAAATACTTGAGAATCATTCGATTTGTCTGAAATTTTTCAGATTTACTAAAGAAAAATAGAGCTTCAAT</canonical>
            <polymorphic>CACGTTGAGCTCAATTATCTCGGTTCCTATAAGAGATAACCAACACTTGTCAATTAATAAAATGTTGCTGATATCATGATAATCATTTTATCAGTTGACAACTTTTTGATATCATTCAAAAGAAGTGAGGTATATAGGCTCAAAGTCCGGGTGGCGTTCTATTAGAATGGTTACGGTAAAAAAAATATTTTTTACAATTTTTTCAGGTTTATCCGAGAATCAGCAATAATAGAAGAATCTGGAAAGAAATACATAACAAATCCATCCTTGCATTTTTTTAGATTTTCATATTCCTAAAATTCGTTTTCAACTCATTTATCCTTTTTGGTGAAAAATCACCTAATTTTGGAAGACTACAAAAGTGGTTCAGCATTTTTCAATTTGTCTGAAAATTGCATATTATACTAAACAAAACTAGAGCTTTAATTTAATAGTTGACAACTTTTTCGGAAAATTTCATCTAAATGAGATAGGTGGTCTCGAAGTGTCCTGGCACTTCRCTCGGCACGCAATCTGGCATTATTAGAGCGTCATTCCATACTTTAACTTCAAGCTTTTAAGTTAAAACTATCTCGGCTTTTTTGAGAGATATCAGAAATCAATCAACTGATAAAATGTTTATTATAATGCCATCTACATTTTATCAGTTGGAAACTTTTTGATATCTCTTATAGGGAGCAAGATAAATTGAGCTCAAAGTTAGCAAGTGTTGTGGTGACGCCAGCCGGCGGCGCGCAATTAAAGTTCAATTATCTCAGTTCCTATGAGAGCTATAAACAATTTGTCAACTGATAAAATGTAGATGATATTATGATAAACATTTTGTCAGTTGACAACTTTTTGATATCTTACGAACCCAGATAATTGAGCTCAAAGTTTGCAAACATTATTTTTCAATGTACTAAGATAAACATATTTTTAGAGCATAGAAAAAATACTTGAGAATCATTCGATTTGTCTGAAATTTTTCAGATTTACTAAAGAAAAATAGAGCTTCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>283 202 177 112 82 43 26 26 11 8 8 7 5 5 3 2</canonical_bands>
                <polymorphic_bands>283 202 177 112 82 43 26 26 12 11 8 8 5 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCGTTTTCAACTCATTTATCC</pcr_primer_p1>
		<pcr_primer_p2>GCTTGAAGTTAAAGTATGGAATG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TTCGTTTTCAACTCATTTATCCTTTTTGGTGAAAAATCACCTAATTTTGGAAGACTACAAAAGTGGTTCAGCATTTTTCAATTTGTCTGAAAATTGCATATTATACTAAACAAAACTAGAGCTTTAATTTAATAGTTGACAACTTTTTCGGAAAATTTCATCTAAATGAGATAGGTGGTCTCGAAGTGTCCTGGCACTTCACTCGGCACGCAATCTGGCATTATTAGAGCGTCATTCCATACTTTAACTTCAAGC</canonical_amplicon>
		<polymorphic_amplicon>TTCGTTTTCAACTCATTTATCCTTTTTGGTGAAAAATCACCTAATTTTGGAAGACTACAAAAGTGGTTCAGCATTTTTCAATTTGTCTGAAAATTGCATATTATACTAAACAAAACTAGAGCTTTAATTTAATAGTTGACAACTTTTTCGGAAAATTTCATCTAAATGAGATAGGTGGTCTCGAAGTGTCCTGGCACTTCRCTCGGCACGCAATCTGGCATTATTAGAGCGTCATTCCATACTTTAACTTCAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36030</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>287582</contig_pos>
        <strand>+</strand>
        <context>TTCAAAATAA[A/C]SGTTTTGGGG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTAGACCATTTTTCCATTGGCTGGCGCGCCTTTGGCGCGCTTCAAAATAA</left_flank>
        <right_flank>GGTTTTGGGGCTCAAAAATTGGTAGCTTTGCCTCCAAAAGACTGTTGTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGCCAGAAATGGGAAAATTAGGTTGAAGAAGAAAATAATAAATTTCAAACAATCTGGAAACTTCAAAGGCGCATAGCAAAATGACGATTTCGCTGTTGGCCTGACAATGCGCCTTTAAACAAATCTTTTCAGGGTACCGTAGTTCTCGAATTGCTCAGGCTTATTTGTAAGGTCGGTCCCTATCGTAACCCTTAGGCGTCGCGTTTTCTCAAAATTTTGGAATCCAGGTTACTGTAGACTATACTTGGCTGGTGTGCCTTTGGCCCATTTCAATTAATATACTGTAGATACAGTGGGTCATTTCTAACTGGCTGCCGTGCCTTTGGTGCGTTTCAAAATCCCGGACAGACAGAAATGTTCTATTTTCAGAATATTCTGGAGCATCTTTTTCTAGAAAAAAAGGACCTGTGCTATTTTTCCATAGACTGGCGCGCCTTGAGAGCTTTTTAGACCATTTTTCCATTGGCTGGCGCGCCTTTGGCGCGCTTCAAAATAACGGTTTTGGGGCTCAAAAATTGGTAGCTTTGCCTCCAAAAGACTGTTGTTCTACTGTAAGATTACTGTAGAAAATTCAGGAAACACACACTTTTTTAGTTGAATTTTCAACTTTTTCAGACCGATTTTTCAGTGCGTTTTGCCTCGAATTTCACACATTTTTTCACAGTTTTCTAGTTATAAAAAATCCGATTACTCAGCTTTAAAAATCCCCAAACAACTAACCTCGTTAACCTGTAACGCTCGAATCGAGCTCGTCAGATAGGTGAACAGGCTACTGTTGGTGGTGGTGGCGGATGACGACGACGACGATGATGACATTCAGAAAAATGCCCATACGTCTCGTCAGGCGAATAGGGGGATTCAGATGAATATTCAGAAGACGTCGTTAGGCAATGGAATCTCTCAAAAAAGCCCAAAAACTGTTCGAAACGCAAGTTTTTGCCCTCGTCCTGCGGTTAGTAAGTTAACCGAGCGAGAGAGCGAGAGAGTGCCAGAGAAA</canonical>
            <polymorphic>AATTGCCAGAAATGGGAAAATTAGGTTGAAGAAGAAAATAATAAATTTCAAACAATCTGGAAACTTCAAAGGCGCATAGCAAAATGACGATTTCGCTGTTGGCCTGACAATGCGCCTTTAAACAAATCTTTTCAGGGTACCGTAGTTCTCGAATTGCTCAGGCTTATTTGTAAGGTCGGTCCCTATCGTAACCCTTAGGCGTCGCGTTTTCTCAAAATTTTGGAATCCAGGTTACTGTAGACTATACTTGGCTGGTGTGCCTTTGGCCCATTTCAATTAATATACTGTAGATACAGTGGGTCATTTCTAACTGGCTGCCGTGCCTTTGGTGCGTTTCAAAATCCCGGACAGACAGAAATGTTCTATTTTCAGAATATTCTGGAGCATCTTTTTCTAGAAAAAAAGGACCTGTGCTATTTTTCCATAGACTGGCGCGCCTTGAGAGCTTTTTAGACCATTTTTCCATTGGCTGGCGCGCCTTTGGCGCGCTTCAAAATAAMGGTTTTGGGGCTCAAAAATTGGTAGCTTTGCCTCCAAAAGACTGTTGTTCTACTGTAAGATTACTGTAGAAAATTCAGGAAACACACACTTTTTTAGTTGAATTTTCAACTTTTTCAGACCGATTTTTCAGTGCGTTTTGCCTCGAATTTCACACATTTTTTCACAGTTTTCTAGTTATAAAAAATCCGATTACTCAGCTTTAAAAATCCCCAAACAACTAACCTCGTTAACCTGTAACGCTCGAATCGAGCTCGTCAGATAGGTGAACAGGCTACTGTTGGTGGTGGTGGCGGATGACGACGACGACGATGATGACATTCAGAAAAATGCCCATACGTCTCGTCAGGCGAATAGGGGGATTCAGATGAATATTCAGAAGACGTCGTTAGGCAATGGAATCTCTCAAAAAAGCCCAAAAACTGTTCGAAACGCAAGTTTTTGCCCTCGTCCTGCGGTTAGTAAGTTAACCGAGCGAGAGAGCGAGAGAGTGCCAGAGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>206 145 141 111 101 95 78 50 42 11 11 9</canonical_bands>
                <polymorphic_bands>248 145 141 111 101 95 78 50 11 11 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATATTCTGGAGCATCTTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>CGGTCTGAAAAAGTTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATATTCTGGAGCATCTTTTTCTAGAAAAAAAGGACCTGTGCTATTTTTCCATAGACTGGCGCGCCTTGAGAGCTTTTTAGACCATTTTTCCATTGGCTGGCGCGCCTTTGGCGCGCTTCAAAATAACGGTTTTGGGGCTCAAAAATTGGTAGCTTTGCCTCCAAAAGACTGTTGTTCTACTGTAAGATTACTGTAGAAAATTCAGGAAACACACACTTTTTTAGTTGAATTTTCAACTTTTTCAGACCG</canonical_amplicon>
		<polymorphic_amplicon>AATATTCTGGAGCATCTTTTTCTAGAAAAAAAGGACCTGTGCTATTTTTCCATAGACTGGCGCGCCTTGAGAGCTTTTTAGACCATTTTTCCATTGGCTGGCGCGCCTTTGGCGCGCTTCAAAATAAMGGTTTTGGGGCTCAAAAATTGGTAGCTTTGCCTCCAAAAGACTGTTGTTCTACTGTAAGATTACTGTAGAAAATTCAGGAAACACACACTTTTTTAGTTGAATTTTCAACTTTTTCAGACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36031</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>287583</contig_pos>
        <strand>+</strand>
        <context>TCAAAATAAM[C/G]GTTTTGGGGC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAGACCATTTTTCCATTGGCTGGCGCGCCTTTGGCGCGCTTCAAAATAAC</left_flank>
        <right_flank>GTTTTGGGGCTCAAAAATTGGTAGCTTTGCCTCCAAAAGACTGTTGTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGCCAGAAATGGGAAAATTAGGTTGAAGAAGAAAATAATAAATTTCAAACAATCTGGAAACTTCAAAGGCGCATAGCAAAATGACGATTTCGCTGTTGGCCTGACAATGCGCCTTTAAACAAATCTTTTCAGGGTACCGTAGTTCTCGAATTGCTCAGGCTTATTTGTAAGGTCGGTCCCTATCGTAACCCTTAGGCGTCGCGTTTTCTCAAAATTTTGGAATCCAGGTTACTGTAGACTATACTTGGCTGGTGTGCCTTTGGCCCATTTCAATTAATATACTGTAGATACAGTGGGTCATTTCTAACTGGCTGCCGTGCCTTTGGTGCGTTTCAAAATCCCGGACAGACAGAAATGTTCTATTTTCAGAATATTCTGGAGCATCTTTTTCTAGAAAAAAAGGACCTGTGCTATTTTTCCATAGACTGGCGCGCCTTGAGAGCTTTTTAGACCATTTTTCCATTGGCTGGCGCGCCTTTGGCGCGCTTCAAAATAACGGTTTTGGGGCTCAAAAATTGGTAGCTTTGCCTCCAAAAGACTGTTGTTCTACTGTAAGATTACTGTAGAAAATTCAGGAAACACACACTTTTTTAGTTGAATTTTCAACTTTTTCAGACCGATTTTTCAGTGCGTTTTGCCTCGAATTTCACACATTTTTTCACAGTTTTCTAGTTATAAAAAATCCGATTACTCAGCTTTAAAAATCCCCAAACAACTAACCTCGTTAACCTGTAACGCTCGAATCGAGCTCGTCAGATAGGTGAACAGGCTACTGTTGGTGGTGGTGGCGGATGACGACGACGACGATGATGACATTCAGAAAAATGCCCATACGTCTCGTCAGGCGAATAGGGGGATTCAGATGAATATTCAGAAGACGTCGTTAGGCAATGGAATCTCTCAAAAAAGCCCAAAAACTGTTCGAAACGCAAGTTTTTGCCCTCGTCCTGCGGTTAGTAAGTTAACCGAGCGAGAGAGCGAGAGAGTGCCAGAGAAAG</canonical>
            <polymorphic>ATTGCCAGAAATGGGAAAATTAGGTTGAAGAAGAAAATAATAAATTTCAAACAATCTGGAAACTTCAAAGGCGCATAGCAAAATGACGATTTCGCTGTTGGCCTGACAATGCGCCTTTAAACAAATCTTTTCAGGGTACCGTAGTTCTCGAATTGCTCAGGCTTATTTGTAAGGTCGGTCCCTATCGTAACCCTTAGGCGTCGCGTTTTCTCAAAATTTTGGAATCCAGGTTACTGTAGACTATACTTGGCTGGTGTGCCTTTGGCCCATTTCAATTAATATACTGTAGATACAGTGGGTCATTTCTAACTGGCTGCCGTGCCTTTGGTGCGTTTCAAAATCCCGGACAGACAGAAATGTTCTATTTTCAGAATATTCTGGAGCATCTTTTTCTAGAAAAAAAGGACCTGTGCTATTTTTCCATAGACTGGCGCGCCTTGAGAGCTTTTTAGACCATTTTTCCATTGGCTGGCGCGCCTTTGGCGCGCTTCAAAATAACSGTTTTGGGGCTCAAAAATTGGTAGCTTTGCCTCCAAAAGACTGTTGTTCTACTGTAAGATTACTGTAGAAAATTCAGGAAACACACACTTTTTTAGTTGAATTTTCAACTTTTTCAGACCGATTTTTCAGTGCGTTTTGCCTCGAATTTCACACATTTTTTCACAGTTTTCTAGTTATAAAAAATCCGATTACTCAGCTTTAAAAATCCCCAAACAACTAACCTCGTTAACCTGTAACGCTCGAATCGAGCTCGTCAGATAGGTGAACAGGCTACTGTTGGTGGTGGTGGCGGATGACGACGACGACGATGATGACATTCAGAAAAATGCCCATACGTCTCGTCAGGCGAATAGGGGGATTCAGATGAATATTCAGAAGACGTCGTTAGGCAATGGAATCTCTCAAAAAAGCCCAAAAACTGTTCGAAACGCAAGTTTTTGCCCTCGTCCTGCGGTTAGTAAGTTAACCGAGCGAGAGAGCGAGAGAGTGCCAGAGAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATTCTGGAGCATCTTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>CGGTCTGAAAAAGTTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATATTCTGGAGCATCTTTTTCTAGAAAAAAAGGACCTGTGCTATTTTTCCATAGACTGGCGCGCCTTGAGAGCTTTTTAGACCATTTTTCCATTGGCTGGCGCGCCTTTGGCGCGCTTCAAAATAACGGTTTTGGGGCTCAAAAATTGGTAGCTTTGCCTCCAAAAGACTGTTGTTCTACTGTAAGATTACTGTAGAAAATTCAGGAAACACACACTTTTTTAGTTGAATTTTCAACTTTTTCAGACCG</canonical_amplicon>
		<polymorphic_amplicon>AATATTCTGGAGCATCTTTTTCTAGAAAAAAAGGACCTGTGCTATTTTTCCATAGACTGGCGCGCCTTGAGAGCTTTTTAGACCATTTTTCCATTGGCTGGCGCGCCTTTGGCGCGCTTCAAAATAACSGTTTTGGGGCTCAAAAATTGGTAGCTTTGCCTCCAAAAGACTGTTGTTCTACTGTAAGATTACTGTAGAAAATTCAGGAAACACACACTTTTTTAGTTGAATTTTCAACTTTTTCAGACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36032</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>287623</contig_pos>
        <strand>+</strand>
        <context>CCTCCAAAAG[A/G]CTGTTGTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAAAATAACGGTTTTGGGGCTCAAAAATTGGTAGCTTTGCCTCCAAAAG</left_flank>
        <right_flank>CTGTTGTTCTACTGTAAGATTACTGTAGAAAATTCAGGAAACACACACTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAATTTCAAACAATCTGGAAACTTCAAAGGCGCATAGCAAAATGACGATTTCGCTGTTGGCCTGACAATGCGCCTTTAAACAAATCTTTTCAGGGTACCGTAGTTCTCGAATTGCTCAGGCTTATTTGTAAGGTCGGTCCCTATCGTAACCCTTAGGCGTCGCGTTTTCTCAAAATTTTGGAATCCAGGTTACTGTAGACTATACTTGGCTGGTGTGCCTTTGGCCCATTTCAATTAATATACTGTAGATACAGTGGGTCATTTCTAACTGGCTGCCGTGCCTTTGGTGCGTTTCAAAATCCCGGACAGACAGAAATGTTCTATTTTCAGAATATTCTGGAGCATCTTTTTCTAGAAAAAAAGGACCTGTGCTATTTTTCCATAGACTGGCGCGCCTTGAGAGCTTTTTAGACCATTTTTCCATTGGCTGGCGCGCCTTTGGCGCGCTTCAAAATAACGGTTTTGGGGCTCAAAAATTGGTAGCTTTGCCTCCAAAAGACTGTTGTTCTACTGTAAGATTACTGTAGAAAATTCAGGAAACACACACTTTTTTAGTTGAATTTTCAACTTTTTCAGACCGATTTTTCAGTGCGTTTTGCCTCGAATTTCACACATTTTTTCACAGTTTTCTAGTTATAAAAAATCCGATTACTCAGCTTTAAAAATCCCCAAACAACTAACCTCGTTAACCTGTAACGCTCGAATCGAGCTCGTCAGATAGGTGAACAGGCTACTGTTGGTGGTGGTGGCGGATGACGACGACGACGATGATGACATTCAGAAAAATGCCCATACGTCTCGTCAGGCGAATAGGGGGATTCAGATGAATATTCAGAAGACGTCGTTAGGCAATGGAATCTCTCAAAAAAGCCCAAAAACTGTTCGAAACGCAAGTTTTTGCCCTCGTCCTGCGGTTAGTAAGTTAACCGAGCGAGAGAGCGAGAGAGTGCCAGAGAAAGCATACAGGTAGATAGAGAGAGAGAGAGAGGGTGTCAATTG</canonical>
            <polymorphic>TAAATTTCAAACAATCTGGAAACTTCAAAGGCGCATAGCAAAATGACGATTTCGCTGTTGGCCTGACAATGCGCCTTTAAACAAATCTTTTCAGGGTACCGTAGTTCTCGAATTGCTCAGGCTTATTTGTAAGGTCGGTCCCTATCGTAACCCTTAGGCGTCGCGTTTTCTCAAAATTTTGGAATCCAGGTTACTGTAGACTATACTTGGCTGGTGTGCCTTTGGCCCATTTCAATTAATATACTGTAGATACAGTGGGTCATTTCTAACTGGCTGCCGTGCCTTTGGTGCGTTTCAAAATCCCGGACAGACAGAAATGTTCTATTTTCAGAATATTCTGGAGCATCTTTTTCTAGAAAAAAAGGACCTGTGCTATTTTTCCATAGACTGGCGCGCCTTGAGAGCTTTTTAGACCATTTTTCCATTGGCTGGCGCGCCTTTGGCGCGCTTCAAAATAACGGTTTTGGGGCTCAAAAATTGGTAGCTTTGCCTCCAAAAGRCTGTTGTTCTACTGTAAGATTACTGTAGAAAATTCAGGAAACACACACTTTTTTAGTTGAATTTTCAACTTTTTCAGACCGATTTTTCAGTGCGTTTTGCCTCGAATTTCACACATTTTTTCACAGTTTTCTAGTTATAAAAAATCCGATTACTCAGCTTTAAAAATCCCCAAACAACTAACCTCGTTAACCTGTAACGCTCGAATCGAGCTCGTCAGATAGGTGAACAGGCTACTGTTGGTGGTGGTGGCGGATGACGACGACGACGATGATGACATTCAGAAAAATGCCCATACGTCTCGTCAGGCGAATAGGGGGATTCAGATGAATATTCAGAAGACGTCGTTAGGCAATGGAATCTCTCAAAAAAGCCCAAAAACTGTTCGAAACGCAAGTTTTTGCCCTCGTCCTGCGGTTAGTAAGTTAACCGAGCGAGAGAGCGAGAGAGTGCCAGAGAAAGCATACAGGTAGATAGAGAGAGAGAGAGAGGGTGTCAATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>206 145 119 111 101 100 95 50 42 11 11 9</canonical_bands>
                <polymorphic_bands>206 145 119 111 101 100 95 53 50 11 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATATTCTGGAGCATCTTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>CGGTCTGAAAAAGTTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATATTCTGGAGCATCTTTTTCTAGAAAAAAAGGACCTGTGCTATTTTTCCATAGACTGGCGCGCCTTGAGAGCTTTTTAGACCATTTTTCCATTGGCTGGCGCGCCTTTGGCGCGCTTCAAAATAACGGTTTTGGGGCTCAAAAATTGGTAGCTTTGCCTCCAAAAGACTGTTGTTCTACTGTAAGATTACTGTAGAAAATTCAGGAAACACACACTTTTTTAGTTGAATTTTCAACTTTTTCAGACCG</canonical_amplicon>
		<polymorphic_amplicon>AATATTCTGGAGCATCTTTTTCTAGAAAAAAAGGACCTGTGCTATTTTTCCATAGACTGGCGCGCCTTGAGAGCTTTTTAGACCATTTTTCCATTGGCTGGCGCGCCTTTGGCGCGCTTCAAAATAACGGTTTTGGGGCTCAAAAATTGGTAGCTTTGCCTCCAAAAGRCTGTTGTTCTACTGTAAGATTACTGTAGAAAATTCAGGAAACACACACTTTTTTAGTTGAATTTTCAACTTTTTCAGACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36033</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>288064</contig_pos>
        <strand></strand>
        <context>agcgagagag[C/T]gagagagtgc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCAAGTTTTTGCCCTCGTCCTGCGGTTAGTAAGTTAACCGAGCGAGAGAG</left_flank>
        <right_flank>GAGAGAGTGCCAGAGAAAGCATACAGGTAGATAGAGAGAGAGAGAGAGGG</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCGCGCTTCAAAATAACGGTTTTGGGGCTCAAAAATTGGTAGCTTTGCCTCCAAAAGACTGTTGTTCTACTGTAAGATTACTGTAGAAAATTCAGGAAACACACACTTTTTTAGTTGAATTTTCAACTTTTTCAGACCGATTTTTCAGTGCGTTTTGCCTCGAATTTCACACATTTTTTCACAGTTTTCTAGTTATAAAAAATCCGATTACTCAGCTTTAAAAATCCCCAAACAACTAACCTCGTTAACCTGTAACGCTCGAATCGAGCTCGTCAGATAGGTGAACAGGCTACTGTTGGTGGTGGTGGCGGATGACGACGACGACGATGATGACATTCAGAAAAATGCCCATACGTCTCGTCAGGCGAATAGGGGGATTCAGATGAATATTCAGAAGACGTCGTTAGGCAATGGAATCTCTCAAAAAAGCCCAAAAACTGTTCGAAACGCAAGTTTTTGCCCTCGTCCTGCGGTTAGTAAGTTAACCGAGCGAGAGAGCGAGAGAGTGCCAGAGAAAGCATACAGGTAGATAGAGAGAGAGAGAGAGGGTGTCAATTGTCTGCGTCTCTCTGTTAGACACACACTCTCTCTGTCGCTTCTCAAAAGAACTGTATGCATTGTGGCCGTGCAGTTCCCTCGGGAGAGAGAGAGAGTGGGATGGCTAGAGACGCAGAGAAGTGAGAGAGAGAGAAGTGGTGGTGACCGATATTATACAGATTTTCGAGAAAAAAGGCGTCAACCGACGATTCGGAAGAGAAGAAGAAGAAGAAGACGTCGGCGGGTGGAGGAGGGATGGAGGTCAAGTGGAATTTGATCGAAATTGGAGATTCTTTAGATTTTTTTTTGGACTGGCGTGCCAATTGGCGCGTTTTTGGGATCATTGAAAATTTTTGAACAATTTCGAAAATTTCGAATTTTTTGGGTATTTTCGGGAATTTGGAAAATCTCGAATTTTGGATTCTAGATTACTGTGGTCTATACTATAATCTTCAAGGACAA</canonical>
            <polymorphic>GGCGCGCTTCAAAATAACGGTTTTGGGGCTCAAAAATTGGTAGCTTTGCCTCCAAAAGACTGTTGTTCTACTGTAAGATTACTGTAGAAAATTCAGGAAACACACACTTTTTTAGTTGAATTTTCAACTTTTTCAGACCGATTTTTCAGTGCGTTTTGCCTCGAATTTCACACATTTTTTCACAGTTTTCTAGTTATAAAAAATCCGATTACTCAGCTTTAAAAATCCCCAAACAACTAACCTCGTTAACCTGTAACGCTCGAATCGAGCTCGTCAGATAGGTGAACAGGCTACTGTTGGTGGTGGTGGCGGATGACGACGACGACGATGATGACATTCAGAAAAATGCCCATACGTCTCGTCAGGCGAATAGGGGGATTCAGATGAATATTCAGAAGACGTCGTTAGGCAATGGAATCTCTCAAAAAAGCCCAAAAACTGTTCGAAACGCAAGTTTTTGCCCTCGTCCTGCGGTTAGTAAGTTAACCGAGCGAGAGAGYGAGAGAGTGCCAGAGAAAGCATACAGGTAGATAGAGAGAGAGAGAGAGGGTGTCAATTGTCTGCGTCTCTCTGTTAGACACACACTCTCTCTGTCGCTTCTCAAAAGAACTGTATGCATTGTGGCCGTGCAGTTCCCTCGGGAGAGAGAGAGAGTGGGATGGCTAGAGACGCAGAGAAGTGAGAGAGAGAGAAGTGGTGGTGACCGATATTATACAGATTTTCGAGAAAAAAGGCGTCAACCGACGATTCGGAAGAGAAGAAGAAGAAGAAGACGTCGGCGGGTGGAGGAGGGATGGAGGTCAAGTGGAATTTGATCGAAATTGGAGATTCTTTAGATTTTTTTTTGGACTGGCGTGCCAATTGGCGCGTTTTTGGGATCATTGAAAATTTTTGAACAATTTCGAAAATTTCGAATTTTTTGGGTATTTTCGGGAATTTGGAAAATCTCGAATTTTGGATTCTAGATTACTGTGGTCTATACTATAATCTTCAAGGACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGATGACATTCAGAAAAATG</pcr_primer_p1>
		<pcr_primer_p2>TAACAGAGAGACGCAGACAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATGATGACATTCAGAAAAATGCCCATACGTCTCGTCAGGCGAATAGGGGGATTCAGATGAATATTCAGAAGACGTCGTTAGGCAATGGAATCTCTCAAAAAAGCCCAAAAACTGTTCGAAACGCAAGTTTTTGCCCTCGTCCTGCGGTTAGTAAGTTAACCGAGCGAGAGAGCGAGAGAGTGCCAGAGAAAGCATACAGGTAGATAGAGAGAGAGAGAGAGGGTGTCAATTGTCTGCGTCTCTCTGTTA</canonical_amplicon>
		<polymorphic_amplicon>GATGATGACATTCAGAAAAATGCCCATACGTCTCGTCAGGCGAATAGGGGGATTCAGATGAATATTCAGAAGACGTCGTTAGGCAATGGAATCTCTCAAAAAAGCCCAAAAACTGTTCGAAACGCAAGTTTTTGCCCTCGTCCTGCGGTTAGTAAGTTAACCGAGCGAGAGAGYGAGAGAGTGCCAGAGAAAGCATACAGGTAGATAGAGAGAGAGAGAGAGGGTGTCAATTGTCTGCGTCTCTCTGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36034</snp_id>
        <super_contig>c010300742.Contig1</super_contig>
        <contig_pos>288084</contig_pos>
        <strand></strand>
        <context>ccagagaaag[C/A]atacaggtag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TGCGGTTAGTAAGTTAACCGAGCGAGAGAGCGAGAGAGTGCCAGAGAAAG</left_flank>
        <right_flank>ATACAGGTAGATAGAGAGAGAGAGAGAGGGTGTCAATTGTCTGCGTCTCT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGGGGCTCAAAAATTGGTAGCTTTGCCTCCAAAAGACTGTTGTTCTACTGTAAGATTACTGTAGAAAATTCAGGAAACACACACTTTTTTAGTTGAATTTTCAACTTTTTCAGACCGATTTTTCAGTGCGTTTTGCCTCGAATTTCACACATTTTTTCACAGTTTTCTAGTTATAAAAAATCCGATTACTCAGCTTTAAAAATCCCCAAACAACTAACCTCGTTAACCTGTAACGCTCGAATCGAGCTCGTCAGATAGGTGAACAGGCTACTGTTGGTGGTGGTGGCGGATGACGACGACGACGATGATGACATTCAGAAAAATGCCCATACGTCTCGTCAGGCGAATAGGGGGATTCAGATGAATATTCAGAAGACGTCGTTAGGCAATGGAATCTCTCAAAAAAGCCCAAAAACTGTTCGAAACGCAAGTTTTTGCCCTCGTCCTGCGGTTAGTAAGTTAACCGAGCGAGAGAGCGAGAGAGTGCCAGAGAAAGCATACAGGTAGATAGAGAGAGAGAGAGAGGGTGTCAATTGTCTGCGTCTCTCTGTTAGACACACACTCTCTCTGTCGCTTCTCAAAAGAACTGTATGCATTGTGGCCGTGCAGTTCCCTCGGGAGAGAGAGAGAGTGGGATGGCTAGAGACGCAGAGAAGTGAGAGAGAGAGAAGTGGTGGTGACCGATATTATACAGATTTTCGAGAAAAAAGGCGTCAACCGACGATTCGGAAGAGAAGAAGAAGAAGAAGACGTCGGCGGGTGGAGGAGGGATGGAGGTCAAGTGGAATTTGATCGAAATTGGAGATTCTTTAGATTTTTTTTTGGACTGGCGTGCCAATTGGCGCGTTTTTGGGATCATTGAAAATTTTTGAACAATTTCGAAAATTTCGAATTTTTTGGGTATTTTCGGGAATTTGGAAAATCTCGAATTTTGGATTCTAGATTACTGTGGTCTATACTATAATCTTCAAGGACAAATGGCTGGTGTGTCTTCGGC</canonical>
            <polymorphic>TTTTGGGGCTCAAAAATTGGTAGCTTTGCCTCCAAAAGACTGTTGTTCTACTGTAAGATTACTGTAGAAAATTCAGGAAACACACACTTTTTTAGTTGAATTTTCAACTTTTTCAGACCGATTTTTCAGTGCGTTTTGCCTCGAATTTCACACATTTTTTCACAGTTTTCTAGTTATAAAAAATCCGATTACTCAGCTTTAAAAATCCCCAAACAACTAACCTCGTTAACCTGTAACGCTCGAATCGAGCTCGTCAGATAGGTGAACAGGCTACTGTTGGTGGTGGTGGCGGATGACGACGACGACGATGATGACATTCAGAAAAATGCCCATACGTCTCGTCAGGCGAATAGGGGGATTCAGATGAATATTCAGAAGACGTCGTTAGGCAATGGAATCTCTCAAAAAAGCCCAAAAACTGTTCGAAACGCAAGTTTTTGCCCTCGTCCTGCGGTTAGTAAGTTAACCGAGCGAGAGAGCGAGAGAGTGCCAGAGAAAGMATACAGGTAGATAGAGAGAGAGAGAGAGGGTGTCAATTGTCTGCGTCTCTCTGTTAGACACACACTCTCTCTGTCGCTTCTCAAAAGAACTGTATGCATTGTGGCCGTGCAGTTCCCTCGGGAGAGAGAGAGAGTGGGATGGCTAGAGACGCAGAGAAGTGAGAGAGAGAGAAGTGGTGGTGACCGATATTATACAGATTTTCGAGAAAAAAGGCGTCAACCGACGATTCGGAAGAGAAGAAGAAGAAGAAGACGTCGGCGGGTGGAGGAGGGATGGAGGTCAAGTGGAATTTGATCGAAATTGGAGATTCTTTAGATTTTTTTTTGGACTGGCGTGCCAATTGGCGCGTTTTTGGGATCATTGAAAATTTTTGAACAATTTCGAAAATTTCGAATTTTTTGGGTATTTTCGGGAATTTGGAAAATCTCGAATTTTGGATTCTAGATTACTGTGGTCTATACTATAATCTTCAAGGACAAATGGCTGGTGTGTCTTCGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGATGACATTCAGAAAAATG</pcr_primer_p1>
		<pcr_primer_p2>TAACAGAGAGACGCAGACAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATGATGACATTCAGAAAAATGCCCATACGTCTCGTCAGGCGAATAGGGGGATTCAGATGAATATTCAGAAGACGTCGTTAGGCAATGGAATCTCTCAAAAAAGCCCAAAAACTGTTCGAAACGCAAGTTTTTGCCCTCGTCCTGCGGTTAGTAAGTTAACCGAGCGAGAGAGCGAGAGAGTGCCAGAGAAAGCATACAGGTAGATAGAGAGAGAGAGAGAGGGTGTCAATTGTCTGCGTCTCTCTGTTA</canonical_amplicon>
		<polymorphic_amplicon>GATGATGACATTCAGAAAAATGCCCATACGTCTCGTCAGGCGAATAGGGGGATTCAGATGAATATTCAGAAGACGTCGTTAGGCAATGGAATCTCTCAAAAAAGCCCAAAAACTGTTCGAAACGCAAGTTTTTGCCCTCGTCCTGCGGTTAGTAAGTTAACCGAGCGAGAGAGCGAGAGAGTGCCAGAGAAAGMATACAGGTAGATAGAGAGAGAGAGAGAGGGTGTCAATTGTCTGCGTCTCTCTGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36035</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>37251</contig_pos>
        <strand>+</strand>
        <context>CTGGATTTTT[A/G]AATTTCTGAR</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGCTTTTTTGAATTCCTGGATTTCAGAATTCCTGTTTTTCTGGATTTTT</left_flank>
        <right_flank>AATTTCTGAATTCTCGAAACTTCTAGATTTTTCAAATCATTGATTATACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACATGTGAAGCAAGGGATCACTCCGTTCATAATCCAATTGTCTTATCAATTTTTCTTTTTTCATCGGTCAAAAAATTTCTCTCATCTAGTTTTAACCTGTTTTAATGAACCTTGTTGAACCCAAAAACCGTCTTCAGACACACCGGAATCAACAATGTCTCTTTGGGGAAATTACTACAGGTAAAAAGGGAAAAGGGGGACCGAAAATATTTCAGAATCAAAATTGGCAAAATACCACACACGACAACAACATAGCTTTTGAAAATACTGAACACAAAATTCGGCAATTTATAAACTTCGTATGAAAGCAAAATTACAAGTTTCAATTCCGATTCTTTAGAGCAATTTTTGAAAAAAAACTGAAATTTAAACTTTTTCCGTTTACTGAATATTTTGAAAACCACGACTGGATATCCTTGAAATTTCTAAATTTTTAAATTTCGGAAATCCGCTTTTTTGAATTCCTGGATTTCAGAATTCCTGTTTTTCTGGATTTTTGAATTTCTGAATTCTCGAAACTTCTAGATTTTTCAAATCATTGATTATACAAGAATTATCAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTTTAAAAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGATTGTTAGTGATAGCTGTTGGATTTTTATGCTTGGCATCTGTCTGTTCCAATTATATTGTCATTAATTTCACCTTCATCTGCATGAAAAATGACTATACCGAGAGTTATCTGGACAAAAATGGGGTAGGTTTTGAGATATAGGATA</canonical>
            <polymorphic>CACATGTGAAGCAAGGGATCACTCCGTTCATAATCCAATTGTCTTATCAATTTTTCTTTTTTCATCGGTCAAAAAATTTCTCTCATCTAGTTTTAACCTGTTTTAATGAACCTTGTTGAACCCAAAAACCGTCTTCAGACACACCGGAATCAACAATGTCTCTTTGGGGAAATTACTACAGGTAAAAAGGGAAAAGGGGGACCGAAAATATTTCAGAATCAAAATTGGCAAAATACCACACACGACAACAACATAGCTTTTGAAAATACTGAACACAAAATTCGGCAATTTATAAACTTCGTATGAAAGCAAAATTACAAGTTTCAATTCCGATTCTTTAGAGCAATTTTTGAAAAAAAACTGAAATTTAAACTTTTTCCGTTTACTGAATATTTTGAAAACCACGACTGGATATCCTTGAAATTTCTAAATTTTTAAATTTCGGAAATCCGCTTTTTTGAATTCCTGGATTTCAGAATTCCTGTTTTTCTGGATTTTTRAATTTCTGAATTCTCGAAACTTCTAGATTTTTCAAATCATTGATTATACAAGAATTATCAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTTTAAAAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGATTGTTAGTGATAGCTGTTGGATTTTTATGCTTGGCATCTGTCTGTTCCAATTATATTGTCATTAATTTCACCTTCATCTGCATGAAAAATGACTATACCGAGAGTTATCTGGACAAAAATGGGGTAGGTTTTGAGATATAGGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>204 185 99 86 83 74 57 33 28 24 23 18 16 12 9 9 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>204 185 99 86 83 74 57 33 32 28 23 18 16 12 9 9 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTTCAATTCCGATTCTTTAG</pcr_primer_p1>
		<pcr_primer_p2>CCGAAAATTGATAATTCTTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGTTTCAATTCCGATTCTTTAGAGCAATTTTTGAAAAAAAACTGAAATTTAAACTTTTTCCGTTTACTGAATATTTTGAAAACCACGACTGGATATCCTTGAAATTTCTAAATTTTTAAATTTCGGAAATCCGCTTTTTTGAATTCCTGGATTTCAGAATTCCTGTTTTTCTGGATTTTTGAATTTCTGAATTCTCGAAACTTCTAGATTTTTCAAATCATTGATTATACAAGAATTATCAATTTTCGG</canonical_amplicon>
		<polymorphic_amplicon>AAGTTTCAATTCCGATTCTTTAGAGCAATTTTTGAAAAAAAACTGAAATTTAAACTTTTTCCGTTTACTGAATATTTTGAAAACCACGACTGGATATCCTTGAAATTTCTAAATTTTTAAATTTCGGAAATCCGCTTTTTTGAATTCCTGGATTTCAGAATTCCTGTTTTTCTGGATTTTTRAATTTCTGAATTCTCGAAACTTCTAGATTTTTCAAATCATTGATTATACAAGAATTATCAATTTTCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36036</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>37261</contig_pos>
        <strand>+</strand>
        <context>RAATTTCTGA[A/G]TTCTCGAAAY</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATTCCTGGATTTCAGAATTCCTGTTTTTCTGGATTTTTGAATTTCTGA</left_flank>
        <right_flank>TTCTCGAAACTTCTAGATTTTTCAAATCATTGATTATACAAGAATTATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAAGGGATCACTCCGTTCATAATCCAATTGTCTTATCAATTTTTCTTTTTTCATCGGTCAAAAAATTTCTCTCATCTAGTTTTAACCTGTTTTAATGAACCTTGTTGAACCCAAAAACCGTCTTCAGACACACCGGAATCAACAATGTCTCTTTGGGGAAATTACTACAGGTAAAAAGGGAAAAGGGGGACCGAAAATATTTCAGAATCAAAATTGGCAAAATACCACACACGACAACAACATAGCTTTTGAAAATACTGAACACAAAATTCGGCAATTTATAAACTTCGTATGAAAGCAAAATTACAAGTTTCAATTCCGATTCTTTAGAGCAATTTTTGAAAAAAAACTGAAATTTAAACTTTTTCCGTTTACTGAATATTTTGAAAACCACGACTGGATATCCTTGAAATTTCTAAATTTTTAAATTTCGGAAATCCGCTTTTTTGAATTCCTGGATTTCAGAATTCCTGTTTTTCTGGATTTTTGAATTTCTGAATTCTCGAAACTTCTAGATTTTTCAAATCATTGATTATACAAGAATTATCAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTTTAAAAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGATTGTTAGTGATAGCTGTTGGATTTTTATGCTTGGCATCTGTCTGTTCCAATTATATTGTCATTAATTTCACCTTCATCTGCATGAAAAATGACTATACCGAGAGTTATCTGGACAAAAATGGGGTAGGTTTTGAGATATAGGATATTGGACGGTT</canonical>
            <polymorphic>GCAAGGGATCACTCCGTTCATAATCCAATTGTCTTATCAATTTTTCTTTTTTCATCGGTCAAAAAATTTCTCTCATCTAGTTTTAACCTGTTTTAATGAACCTTGTTGAACCCAAAAACCGTCTTCAGACACACCGGAATCAACAATGTCTCTTTGGGGAAATTACTACAGGTAAAAAGGGAAAAGGGGGACCGAAAATATTTCAGAATCAAAATTGGCAAAATACCACACACGACAACAACATAGCTTTTGAAAATACTGAACACAAAATTCGGCAATTTATAAACTTCGTATGAAAGCAAAATTACAAGTTTCAATTCCGATTCTTTAGAGCAATTTTTGAAAAAAAACTGAAATTTAAACTTTTTCCGTTTACTGAATATTTTGAAAACCACGACTGGATATCCTTGAAATTTCTAAATTTTTAAATTTCGGAAATCCGCTTTTTTGAATTCCTGGATTTCAGAATTCCTGTTTTTCTGGATTTTTGAATTTCTGARTTCTCGAAACTTCTAGATTTTTCAAATCATTGATTATACAAGAATTATCAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTTTAAAAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGATTGTTAGTGATAGCTGTTGGATTTTTATGCTTGGCATCTGTCTGTTCCAATTATATTGTCATTAATTTCACCTTCATCTGCATGAAAAATGACTATACCGAGAGTTATCTGGACAAAAATGGGGTAGGTTTTGAGATATAGGATATTGGACGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>204 195 99 86 83 64 57 33 28 24 23 18 16 12 9 9 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>204 195 99 91 86 64 57 33 28 24 23 18 16 12 9 9 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>450 342 160 32 16</canonical_bands>
                <polymorphic_bands>450 342 192 16</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>99 96 92 88 57 56 52 44 33 32 26 26 26 24 23 20 19 19 18 16 15 13 12 12 9 9 9 8 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>99 96 92 88 57 56 52 52 33 32 26 26 26 24 23 20 19 19 18 16 15 13 12 12 9 9 9 8 8 8 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTTCAATTCCGATTCTTTAG</pcr_primer_p1>
		<pcr_primer_p2>CCGAAAATTGATAATTCTTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGTTTCAATTCCGATTCTTTAGAGCAATTTTTGAAAAAAAACTGAAATTTAAACTTTTTCCGTTTACTGAATATTTTGAAAACCACGACTGGATATCCTTGAAATTTCTAAATTTTTAAATTTCGGAAATCCGCTTTTTTGAATTCCTGGATTTCAGAATTCCTGTTTTTCTGGATTTTTGAATTTCTGAATTCTCGAAACTTCTAGATTTTTCAAATCATTGATTATACAAGAATTATCAATTTTCGG</canonical_amplicon>
		<polymorphic_amplicon>AAGTTTCAATTCCGATTCTTTAGAGCAATTTTTGAAAAAAAACTGAAATTTAAACTTTTTCCGTTTACTGAATATTTTGAAAACCACGACTGGATATCCTTGAAATTTCTAAATTTTTAAATTTCGGAAATCCGCTTTTTTGAATTCCTGGATTTCAGAATTCCTGTTTTTCTGGATTTTTGAATTTCTGARTTCTCGAAACTTCTAGATTTTTCAAATCATTGATTATACAAGAATTATCAATTTTCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36037</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>37271</contig_pos>
        <strand>+</strand>
        <context>RTTCTCGAAA[C/T]TTCTAGATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTCAGAATTCCTGTTTTTCTGGATTTTTGAATTTCTGAATTCTCGAAA</left_flank>
        <right_flank>TTCTAGATTTTTCAAATCATTGATTATACAAGAATTATCAATTTTCGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCCGTTCATAATCCAATTGTCTTATCAATTTTTCTTTTTTCATCGGTCAAAAAATTTCTCTCATCTAGTTTTAACCTGTTTTAATGAACCTTGTTGAACCCAAAAACCGTCTTCAGACACACCGGAATCAACAATGTCTCTTTGGGGAAATTACTACAGGTAAAAAGGGAAAAGGGGGACCGAAAATATTTCAGAATCAAAATTGGCAAAATACCACACACGACAACAACATAGCTTTTGAAAATACTGAACACAAAATTCGGCAATTTATAAACTTCGTATGAAAGCAAAATTACAAGTTTCAATTCCGATTCTTTAGAGCAATTTTTGAAAAAAAACTGAAATTTAAACTTTTTCCGTTTACTGAATATTTTGAAAACCACGACTGGATATCCTTGAAATTTCTAAATTTTTAAATTTCGGAAATCCGCTTTTTTGAATTCCTGGATTTCAGAATTCCTGTTTTTCTGGATTTTTGAATTTCTGAATTCTCGAAACTTCTAGATTTTTCAAATCATTGATTATACAAGAATTATCAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTTTAAAAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGATTGTTAGTGATAGCTGTTGGATTTTTATGCTTGGCATCTGTCTGTTCCAATTATATTGTCATTAATTTCACCTTCATCTGCATGAAAAATGACTATACCGAGAGTTATCTGGACAAAAATGGGGTAGGTTTTGAGATATAGGATATTGGACGGTTTTTAAAAATT</canonical>
            <polymorphic>ACTCCGTTCATAATCCAATTGTCTTATCAATTTTTCTTTTTTCATCGGTCAAAAAATTTCTCTCATCTAGTTTTAACCTGTTTTAATGAACCTTGTTGAACCCAAAAACCGTCTTCAGACACACCGGAATCAACAATGTCTCTTTGGGGAAATTACTACAGGTAAAAAGGGAAAAGGGGGACCGAAAATATTTCAGAATCAAAATTGGCAAAATACCACACACGACAACAACATAGCTTTTGAAAATACTGAACACAAAATTCGGCAATTTATAAACTTCGTATGAAAGCAAAATTACAAGTTTCAATTCCGATTCTTTAGAGCAATTTTTGAAAAAAAACTGAAATTTAAACTTTTTCCGTTTACTGAATATTTTGAAAACCACGACTGGATATCCTTGAAATTTCTAAATTTTTAAATTTCGGAAATCCGCTTTTTTGAATTCCTGGATTTCAGAATTCCTGTTTTTCTGGATTTTTGAATTTCTGAATTCTCGAAAYTTCTAGATTTTTCAAATCATTGATTATACAAGAATTATCAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTTTAAAAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGATTGTTAGTGATAGCTGTTGGATTTTTATGCTTGGCATCTGTCTGTTCCAATTATATTGTCATTAATTTCACCTTCATCTGCATGAAAAATGACTATACCGAGAGTTATCTGGACAAAAATGGGGTAGGTTTTGAGATATAGGATATTGGACGGTTTTTAAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTCAGAATTCCTGTTTTTC</pcr_primer_p1>
		<pcr_primer_p2>GAAACTTAAGGCATTCATTTTATATT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GATTTCAGAATTCCTGTTTTTCTGGATTTTTGAATTTCTGAATTCTCGAAACTTCTAGATTTTTCAAATCATTGATTATACAAGAATTATCAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTC</canonical_amplicon>
		<polymorphic_amplicon>GATTTCAGAATTCCTGTTTTTCTGGATTTTTGAATTTCTGAATTCTCGAAAYTTCTAGATTTTTCAAATCATTGATTATACAAGAATTATCAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36038</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>37358</contig_pos>
        <strand></strand>
        <context>ctgaatttcc[C/G]aacattcaga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATCAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCC</left_flank>
        <right_flank>AACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTT</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACCTTGTTGAACCCAAAAACCGTCTTCAGACACACCGGAATCAACAATGTCTCTTTGGGGAAATTACTACAGGTAAAAAGGGAAAAGGGGGACCGAAAATATTTCAGAATCAAAATTGGCAAAATACCACACACGACAACAACATAGCTTTTGAAAATACTGAACACAAAATTCGGCAATTTATAAACTTCGTATGAAAGCAAAATTACAAGTTTCAATTCCGATTCTTTAGAGCAATTTTTGAAAAAAAACTGAAATTTAAACTTTTTCCGTTTACTGAATATTTTGAAAACCACGACTGGATATCCTTGAAATTTCTAAATTTTTAAATTTCGGAAATCCGCTTTTTTGAATTCCTGGATTTCAGAATTCCTGTTTTTCTGGATTTTTGAATTTCTGAATTCTCGAAACTTCTAGATTTTTCAAATCATTGATTATACAAGAATTATCAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTTTAAAAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGATTGTTAGTGATAGCTGTTGGATTTTTATGCTTGGCATCTGTCTGTTCCAATTATATTGTCATTAATTTCACCTTCATCTGCATGAAAAATGACTATACCGAGAGTTATCTGGACAAAAATGGGGTAGGTTTTGAGATATAGGATATTGGACGGTTTTTAAAAATTGAATTGGACAAAAAATGAAAATTTTAACCTCTAAACGTAGGTAAGAAAGATTTGCAACCGTTTTGGCAGCTTTTCAGTTCTAGAACT</canonical>
            <polymorphic>GAACCTTGTTGAACCCAAAAACCGTCTTCAGACACACCGGAATCAACAATGTCTCTTTGGGGAAATTACTACAGGTAAAAAGGGAAAAGGGGGACCGAAAATATTTCAGAATCAAAATTGGCAAAATACCACACACGACAACAACATAGCTTTTGAAAATACTGAACACAAAATTCGGCAATTTATAAACTTCGTATGAAAGCAAAATTACAAGTTTCAATTCCGATTCTTTAGAGCAATTTTTGAAAAAAAACTGAAATTTAAACTTTTTCCGTTTACTGAATATTTTGAAAACCACGACTGGATATCCTTGAAATTTCTAAATTTTTAAATTTCGGAAATCCGCTTTTTTGAATTCCTGGATTTCAGAATTCCTGTTTTTCTGGATTTTTGAATTTCTGAATTCTCGAAACTTCTAGATTTTTCAAATCATTGATTATACAAGAATTATCAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCSAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTTTAAAAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGATTGTTAGTGATAGCTGTTGGATTTTTATGCTTGGCATCTGTCTGTTCCAATTATATTGTCATTAATTTCACCTTCATCTGCATGAAAAATGACTATACCGAGAGTTATCTGGACAAAAATGGGGTAGGTTTTGAGATATAGGATATTGGACGGTTTTTAAAAATTGAATTGGACAAAAAATGAAAATTTTAACCTCTAAACGTAGGTAAGAAAGATTTGCAACCGTTTTGGCAGCTTTTCAGTTCTAGAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTATCAATTTTCGGAAGATAA</pcr_primer_p1>
		<pcr_primer_p2>AAATAATTTTCGAAATTCCAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GAATTATCAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTT</canonical_amplicon>
		<polymorphic_amplicon>GAATTATCAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCSAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36039</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>37371</contig_pos>
        <strand></strand>
        <context>cattcagaaa[A/G]atagaagtta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAA</left_flank>
        <right_flank>ATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCAAAAACCGTCTTCAGACACACCGGAATCAACAATGTCTCTTTGGGGAAATTACTACAGGTAAAAAGGGAAAAGGGGGACCGAAAATATTTCAGAATCAAAATTGGCAAAATACCACACACGACAACAACATAGCTTTTGAAAATACTGAACACAAAATTCGGCAATTTATAAACTTCGTATGAAAGCAAAATTACAAGTTTCAATTCCGATTCTTTAGAGCAATTTTTGAAAAAAAACTGAAATTTAAACTTTTTCCGTTTACTGAATATTTTGAAAACCACGACTGGATATCCTTGAAATTTCTAAATTTTTAAATTTCGGAAATCCGCTTTTTTGAATTCCTGGATTTCAGAATTCCTGTTTTTCTGGATTTTTGAATTTCTGAATTCTCGAAACTTCTAGATTTTTCAAATCATTGATTATACAAGAATTATCAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTTTAAAAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGATTGTTAGTGATAGCTGTTGGATTTTTATGCTTGGCATCTGTCTGTTCCAATTATATTGTCATTAATTTCACCTTCATCTGCATGAAAAATGACTATACCGAGAGTTATCTGGACAAAAATGGGGTAGGTTTTGAGATATAGGATATTGGACGGTTTTTAAAAATTGAATTGGACAAAAAATGAAAATTTTAACCTCTAAACGTAGGTAAGAAAGATTTGCAACCGTTTTGGCAGCTTTTCAGTTCTAGAACTTCCAAAGTACATG</canonical>
            <polymorphic>CCCAAAAACCGTCTTCAGACACACCGGAATCAACAATGTCTCTTTGGGGAAATTACTACAGGTAAAAAGGGAAAAGGGGGACCGAAAATATTTCAGAATCAAAATTGGCAAAATACCACACACGACAACAACATAGCTTTTGAAAATACTGAACACAAAATTCGGCAATTTATAAACTTCGTATGAAAGCAAAATTACAAGTTTCAATTCCGATTCTTTAGAGCAATTTTTGAAAAAAAACTGAAATTTAAACTTTTTCCGTTTACTGAATATTTTGAAAACCACGACTGGATATCCTTGAAATTTCTAAATTTTTAAATTTCGGAAATCCGCTTTTTTGAATTCCTGGATTTCAGAATTCCTGTTTTTCTGGATTTTTGAATTTCTGAATTCTCGAAACTTCTAGATTTTTCAAATCATTGATTATACAAGAATTATCAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAARATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTTTAAAAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGATTGTTAGTGATAGCTGTTGGATTTTTATGCTTGGCATCTGTCTGTTCCAATTATATTGTCATTAATTTCACCTTCATCTGCATGAAAAATGACTATACCGAGAGTTATCTGGACAAAAATGGGGTAGGTTTTGAGATATAGGATATTGGACGGTTTTTAAAAATTGAATTGGACAAAAAATGAAAATTTTAACCTCTAAACGTAGGTAAGAAAGATTTGCAACCGTTTTGGCAGCTTTTCAGTTCTAGAACTTCCAAAGTACATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAATTTTCGGAAGATAATAAAG</pcr_primer_p1>
		<pcr_primer_p2>AAATAATTTTCGAAATTCCAAGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTT</canonical_amplicon>
		<polymorphic_amplicon>TCAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAARATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36040</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>37484</contig_pos>
        <strand>+</strand>
        <context>AAGAGTTTAG[A/G]AAAATCTCGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAG</left_flank>
        <right_flank>AAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACCACACACGACAACAACATAGCTTTTGAAAATACTGAACACAAAATTCGGCAATTTATAAACTTCGTATGAAAGCAAAATTACAAGTTTCAATTCCGATTCTTTAGAGCAATTTTTGAAAAAAAACTGAAATTTAAACTTTTTCCGTTTACTGAATATTTTGAAAACCACGACTGGATATCCTTGAAATTTCTAAATTTTTAAATTTCGGAAATCCGCTTTTTTGAATTCCTGGATTTCAGAATTCCTGTTTTTCTGGATTTTTGAATTTCTGAATTCTCGAAACTTCTAGATTTTTCAAATCATTGATTATACAAGAATTATCAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTTTAAAAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGATTGTTAGTGATAGCTGTTGGATTTTTATGCTTGGCATCTGTCTGTTCCAATTATATTGTCATTAATTTCACCTTCATCTGCATGAAAAATGACTATACCGAGAGTTATCTGGACAAAAATGGGGTAGGTTTTGAGATATAGGATATTGGACGGTTTTTAAAAATTGAATTGGACAAAAAATGAAAATTTTAACCTCTAAACGTAGGTAAGAAAGATTTGCAACCGTTTTGGCAGCTTTTCAGTTCTAGAACTTCCAAAGTACATGATTACAGTACTAAATCAGAGATGAACGAAATCCTTTTCATATCAGAACTTGCCTACGTGATTTTTCTCTATCAAAAATCTCGATATTTATAGACAATTCGAAGTGTTTATGAC</canonical>
            <polymorphic>TACCACACACGACAACAACATAGCTTTTGAAAATACTGAACACAAAATTCGGCAATTTATAAACTTCGTATGAAAGCAAAATTACAAGTTTCAATTCCGATTCTTTAGAGCAATTTTTGAAAAAAAACTGAAATTTAAACTTTTTCCGTTTACTGAATATTTTGAAAACCACGACTGGATATCCTTGAAATTTCTAAATTTTTAAATTTCGGAAATCCGCTTTTTTGAATTCCTGGATTTCAGAATTCCTGTTTTTCTGGATTTTTGAATTTCTGAATTCTCGAAACTTCTAGATTTTTCAAATCATTGATTATACAAGAATTATCAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGRAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTTTAAAAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGATTGTTAGTGATAGCTGTTGGATTTTTATGCTTGGCATCTGTCTGTTCCAATTATATTGTCATTAATTTCACCTTCATCTGCATGAAAAATGACTATACCGAGAGTTATCTGGACAAAAATGGGGTAGGTTTTGAGATATAGGATATTGGACGGTTTTTAAAAATTGAATTGGACAAAAAATGAAAATTTTAACCTCTAAACGTAGGTAAGAAAGATTTGCAACCGTTTTGGCAGCTTTTCAGTTCTAGAACTTCCAAAGTACATGATTACAGTACTAAATCAGAGATGAACGAAATCCTTTTCATATCAGAACTTGCCTACGTGATTTTTCTCTATCAAAAATCTCGATATTTATAGACAATTCGAAGTGTTTATGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAATTTTCGGAAGATAATAAAG</pcr_primer_p1>
		<pcr_primer_p2>AAATAATTTTCGAAATTCCAAGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTT</canonical_amplicon>
		<polymorphic_amplicon>TCAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGRAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36041</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>37505</contig_pos>
        <strand>+</strand>
        <context>ATTTCAACAC[A/T]WCCTGAAAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACAC</left_flank>
        <right_flank>CCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTTTTGAAAATACTGAACACAAAATTCGGCAATTTATAAACTTCGTATGAAAGCAAAATTACAAGTTTCAATTCCGATTCTTTAGAGCAATTTTTGAAAAAAAACTGAAATTTAAACTTTTTCCGTTTACTGAATATTTTGAAAACCACGACTGGATATCCTTGAAATTTCTAAATTTTTAAATTTCGGAAATCCGCTTTTTTGAATTCCTGGATTTCAGAATTCCTGTTTTTCTGGATTTTTGAATTTCTGAATTCTCGAAACTTCTAGATTTTTCAAATCATTGATTATACAAGAATTATCAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTTTAAAAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGATTGTTAGTGATAGCTGTTGGATTTTTATGCTTGGCATCTGTCTGTTCCAATTATATTGTCATTAATTTCACCTTCATCTGCATGAAAAATGACTATACCGAGAGTTATCTGGACAAAAATGGGGTAGGTTTTGAGATATAGGATATTGGACGGTTTTTAAAAATTGAATTGGACAAAAAATGAAAATTTTAACCTCTAAACGTAGGTAAGAAAGATTTGCAACCGTTTTGGCAGCTTTTCAGTTCTAGAACTTCCAAAGTACATGATTACAGTACTAAATCAGAGATGAACGAAATCCTTTTCATATCAGAACTTGCCTACGTGATTTTTCTCTATCAAAAATCTCGATATTTATAGACAATTCGAAGTGTTTATGACTACACCAGCGGAGAGAAAAAA</canonical>
            <polymorphic>AGCTTTTGAAAATACTGAACACAAAATTCGGCAATTTATAAACTTCGTATGAAAGCAAAATTACAAGTTTCAATTCCGATTCTTTAGAGCAATTTTTGAAAAAAAACTGAAATTTAAACTTTTTCCGTTTACTGAATATTTTGAAAACCACGACTGGATATCCTTGAAATTTCTAAATTTTTAAATTTCGGAAATCCGCTTTTTTGAATTCCTGGATTTCAGAATTCCTGTTTTTCTGGATTTTTGAATTTCTGAATTCTCGAAACTTCTAGATTTTTCAAATCATTGATTATACAAGAATTATCAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACWCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTTTAAAAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGATTGTTAGTGATAGCTGTTGGATTTTTATGCTTGGCATCTGTCTGTTCCAATTATATTGTCATTAATTTCACCTTCATCTGCATGAAAAATGACTATACCGAGAGTTATCTGGACAAAAATGGGGTAGGTTTTGAGATATAGGATATTGGACGGTTTTTAAAAATTGAATTGGACAAAAAATGAAAATTTTAACCTCTAAACGTAGGTAAGAAAGATTTGCAACCGTTTTGGCAGCTTTTCAGTTCTAGAACTTCCAAAGTACATGATTACAGTACTAAATCAGAGATGAACGAAATCCTTTTCATATCAGAACTTGCCTACGTGATTTTTCTCTATCAAAAATCTCGATATTTATAGACAATTCGAAGTGTTTATGACTACACCAGCGGAGAGAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTTTCGGAAGATAATAAAGAT</pcr_primer_p1>
		<pcr_primer_p2>TGCTATTTTTGCTTTACTGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>281</pcr_amplicon_size>
		<canonical_amplicon>CAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTTTAAAAAATGAAATTTCAGTAAAGCAAAAATAGCA</canonical_amplicon>
		<polymorphic_amplicon>CAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACWCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTTTAAAAAATGAAATTTCAGTAAAGCAAAAATAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36042</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>37506</contig_pos>
        <strand>+</strand>
        <context>TTTCAACACW[A/T/C]CCTGAAAGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T/C</alleles>
        <left_flank>TGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACT</left_flank>
        <right_flank>CCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTTTGAAAATACTGAACACAAAATTCGGCAATTTATAAACTTCGTATGAAAGCAAAATTACAAGTTTCAATTCCGATTCTTTAGAGCAATTTTTGAAAAAAAACTGAAATTTAAACTTTTTCCGTTTACTGAATATTTTGAAAACCACGACTGGATATCCTTGAAATTTCTAAATTTTTAAATTTCGGAAATCCGCTTTTTTGAATTCCTGGATTTCAGAATTCCTGTTTTTCTGGATTTTTGAATTTCTGAATTCTCGAAACTTCTAGATTTTTCAAATCATTGATTATACAAGAATTATCAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTTTAAAAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGATTGTTAGTGATAGCTGTTGGATTTTTATGCTTGGCATCTGTCTGTTCCAATTATATTGTCATTAATTTCACCTTCATCTGCATGAAAAATGACTATACCGAGAGTTATCTGGACAAAAATGGGGTAGGTTTTGAGATATAGGATATTGGACGGTTTTTAAAAATTGAATTGGACAAAAAATGAAAATTTTAACCTCTAAACGTAGGTAAGAAAGATTTGCAACCGTTTTGGCAGCTTTTCAGTTCTAGAACTTCCAAAGTACATGATTACAGTACTAAATCAGAGATGAACGAAATCCTTTTCATATCAGAACTTGCCTACGTGATTTTTCTCTATCAAAAATCTCGATATTTATAGACAATTCGAAGTGTTTATGACTACACCAGCGGAGAGAAAAAAT</canonical>
            <polymorphic>GCTTTTGAAAATACTGAACACAAAATTCGGCAATTTATAAACTTCGTATGAAAGCAAAATTACAAGTTTCAATTCCGATTCTTTAGAGCAATTTTTGAAAAAAAACTGAAATTTAAACTTTTTCCGTTTACTGAATATTTTGAAAACCACGACTGGATATCCTTGAAATTTCTAAATTTTTAAATTTCGGAAATCCGCTTTTTTGAATTCCTGGATTTCAGAATTCCTGTTTTTCTGGATTTTTGAATTTCTGAATTCTCGAAACTTCTAGATTTTTCAAATCATTGATTATACAAGAATTATCAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTWCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTTTAAAAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGATTGTTAGTGATAGCTGTTGGATTTTTATGCTTGGCATCTGTCTGTTCCAATTATATTGTCATTAATTTCACCTTCATCTGCATGAAAAATGACTATACCGAGAGTTATCTGGACAAAAATGGGGTAGGTTTTGAGATATAGGATATTGGACGGTTTTTAAAAATTGAATTGGACAAAAAATGAAAATTTTAACCTCTAAACGTAGGTAAGAAAGATTTGCAACCGTTTTGGCAGCTTTTCAGTTCTAGAACTTCCAAAGTACATGATTACAGTACTAAATCAGAGATGAACGAAATCCTTTTCATATCAGAACTTGCCTACGTGATTTTTCTCTATCAAAAATCTCGATATTTATAGACAATTCGAAGTGTTTATGACTACACCAGCGGAGAGAAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTTTCGGAAGATAATAAAGAT</pcr_primer_p1>
		<pcr_primer_p2>TGCTATTTTTGCTTTACTGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>281</pcr_amplicon_size>
		<canonical_amplicon>CAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTTTAAAAAATGAAATTTCAGTAAAGCAAAAATAGCA</canonical_amplicon>
		<polymorphic_amplicon>CAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTWCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTTTAAAAAATGAAATTTCAGTAAAGCAAAAATAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36043</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>37556</contig_pos>
        <strand></strand>
        <context>AAAATTATTT[T/A]WAAAAAATGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTT</left_flank>
        <right_flank>TAAAAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGCAAAATTACAAGTTTCAATTCCGATTCTTTAGAGCAATTTTTGAAAAAAAACTGAAATTTAAACTTTTTCCGTTTACTGAATATTTTGAAAACCACGACTGGATATCCTTGAAATTTCTAAATTTTTAAATTTCGGAAATCCGCTTTTTTGAATTCCTGGATTTCAGAATTCCTGTTTTTCTGGATTTTTGAATTTCTGAATTCTCGAAACTTCTAGATTTTTCAAATCATTGATTATACAAGAATTATCAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTTTAAAAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGATTGTTAGTGATAGCTGTTGGATTTTTATGCTTGGCATCTGTCTGTTCCAATTATATTGTCATTAATTTCACCTTCATCTGCATGAAAAATGACTATACCGAGAGTTATCTGGACAAAAATGGGGTAGGTTTTGAGATATAGGATATTGGACGGTTTTTAAAAATTGAATTGGACAAAAAATGAAAATTTTAACCTCTAAACGTAGGTAAGAAAGATTTGCAACCGTTTTGGCAGCTTTTCAGTTCTAGAACTTCCAAAGTACATGATTACAGTACTAAATCAGAGATGAACGAAATCCTTTTCATATCAGAACTTGCCTACGTGATTTTTCTCTATCAAAAATCTCGATATTTATAGACAATTCGAAGTGTTTATGACTACACCAGCGGAGAGAAAAAATGGATTATGTGGGCGGTGGCGGCTGGAACAATTATCGGAACGATTCCGATT</canonical>
            <polymorphic>AAAGCAAAATTACAAGTTTCAATTCCGATTCTTTAGAGCAATTTTTGAAAAAAAACTGAAATTTAAACTTTTTCCGTTTACTGAATATTTTGAAAACCACGACTGGATATCCTTGAAATTTCTAAATTTTTAAATTTCGGAAATCCGCTTTTTTGAATTCCTGGATTTCAGAATTCCTGTTTTTCTGGATTTTTGAATTTCTGAATTCTCGAAACTTCTAGATTTTTCAAATCATTGATTATACAAGAATTATCAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTWTAAAAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGATTGTTAGTGATAGCTGTTGGATTTTTATGCTTGGCATCTGTCTGTTCCAATTATATTGTCATTAATTTCACCTTCATCTGCATGAAAAATGACTATACCGAGAGTTATCTGGACAAAAATGGGGTAGGTTTTGAGATATAGGATATTGGACGGTTTTTAAAAATTGAATTGGACAAAAAATGAAAATTTTAACCTCTAAACGTAGGTAAGAAAGATTTGCAACCGTTTTGGCAGCTTTTCAGTTCTAGAACTTCCAAAGTACATGATTACAGTACTAAATCAGAGATGAACGAAATCCTTTTCATATCAGAACTTGCCTACGTGATTTTTCTCTATCAAAAATCTCGATATTTATAGACAATTCGAAGTGTTTATGACTACACCAGCGGAGAGAAAAAATGGATTATGTGGGCGGTGGCGGCTGGAACAATTATCGGAACGATTCCGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>370 292 207 67 64</canonical_bands>
                <polymorphic_bands>577 292 67 64</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>278 261 112 95 92 67 63 32</canonical_bands>
                <polymorphic_bands>278 261 204 95 67 63 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCTTAAGTTTCCAAGAGTTTA</pcr_primer_p1>
		<pcr_primer_p2>CTCTCGGTATAGTCATTTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTTTAAAAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGATTGTTAGTGATAGCTGTTGGATTTTTATGCTTGGCATCTGTCTGTTCCAATTATATTGTCATTAATTTCACCTTCATCTGCATGAAAAATGACTATACCGAGAG</canonical_amplicon>
		<polymorphic_amplicon>GCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTWTAAAAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGATTGTTAGTGATAGCTGTTGGATTTTTATGCTTGGCATCTGTCTGTTCCAATTATATTGTCATTAATTTCACCTTCATCTGCATGAAAAATGACTATACCGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36044</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>37557</contig_pos>
        <strand></strand>
        <context>AAATTATTTW[T/A]AAAAAATGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTT</left_flank>
        <right_flank>AAAAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCAAAATTACAAGTTTCAATTCCGATTCTTTAGAGCAATTTTTGAAAAAAAACTGAAATTTAAACTTTTTCCGTTTACTGAATATTTTGAAAACCACGACTGGATATCCTTGAAATTTCTAAATTTTTAAATTTCGGAAATCCGCTTTTTTGAATTCCTGGATTTCAGAATTCCTGTTTTTCTGGATTTTTGAATTTCTGAATTCTCGAAACTTCTAGATTTTTCAAATCATTGATTATACAAGAATTATCAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTTTAAAAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGATTGTTAGTGATAGCTGTTGGATTTTTATGCTTGGCATCTGTCTGTTCCAATTATATTGTCATTAATTTCACCTTCATCTGCATGAAAAATGACTATACCGAGAGTTATCTGGACAAAAATGGGGTAGGTTTTGAGATATAGGATATTGGACGGTTTTTAAAAATTGAATTGGACAAAAAATGAAAATTTTAACCTCTAAACGTAGGTAAGAAAGATTTGCAACCGTTTTGGCAGCTTTTCAGTTCTAGAACTTCCAAAGTACATGATTACAGTACTAAATCAGAGATGAACGAAATCCTTTTCATATCAGAACTTGCCTACGTGATTTTTCTCTATCAAAAATCTCGATATTTATAGACAATTCGAAGTGTTTATGACTACACCAGCGGAGAGAAAAAATGGATTATGTGGGCGGTGGCGGCTGGAACAATTATCGGAACGATTCCGATTA</canonical>
            <polymorphic>AAGCAAAATTACAAGTTTCAATTCCGATTCTTTAGAGCAATTTTTGAAAAAAAACTGAAATTTAAACTTTTTCCGTTTACTGAATATTTTGAAAACCACGACTGGATATCCTTGAAATTTCTAAATTTTTAAATTTCGGAAATCCGCTTTTTTGAATTCCTGGATTTCAGAATTCCTGTTTTTCTGGATTTTTGAATTTCTGAATTCTCGAAACTTCTAGATTTTTCAAATCATTGATTATACAAGAATTATCAATTTTCGGAAGATAATAAAGATATAAAACGGAATTTCTGAATTTCCCAACATTCAGAAAAATAGAAGTTATGAATTTTGAAAATTTCTCAAATTTTTGAAAATCCGGGAATTCCAAAATTTCAAATAGAATTTTCAATATAAAATGAATGCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTTWAAAAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGATTGTTAGTGATAGCTGTTGGATTTTTATGCTTGGCATCTGTCTGTTCCAATTATATTGTCATTAATTTCACCTTCATCTGCATGAAAAATGACTATACCGAGAGTTATCTGGACAAAAATGGGGTAGGTTTTGAGATATAGGATATTGGACGGTTTTTAAAAATTGAATTGGACAAAAAATGAAAATTTTAACCTCTAAACGTAGGTAAGAAAGATTTGCAACCGTTTTGGCAGCTTTTCAGTTCTAGAACTTCCAAAGTACATGATTACAGTACTAAATCAGAGATGAACGAAATCCTTTTCATATCAGAACTTGCCTACGTGATTTTTCTCTATCAAAAATCTCGATATTTATAGACAATTCGAAGTGTTTATGACTACACCAGCGGAGAGAAAAAATGGATTATGTGGGCGGTGGCGGCTGGAACAATTATCGGAACGATTCCGATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>370 293 207 67 63</canonical_bands>
                <polymorphic_bands>577 293 67 63</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>278 262 112 95 92 67 62 32</canonical_bands>
                <polymorphic_bands>278 262 204 95 67 62 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCTTAAGTTTCCAAGAGTTTA</pcr_primer_p1>
		<pcr_primer_p2>CTCTCGGTATAGTCATTTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTTTAAAAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGATTGTTAGTGATAGCTGTTGGATTTTTATGCTTGGCATCTGTCTGTTCCAATTATATTGTCATTAATTTCACCTTCATCTGCATGAAAAATGACTATACCGAGAG</canonical_amplicon>
		<polymorphic_amplicon>GCCTTAAGTTTCCAAGAGTTTAGGAAAATCTCGGATTTCAACACTCCCTGAAAGTTCAATAAATCCTCGAATACTTGGAATTTCGAAAATTATTTTWAAAAAATGAAATTTCAGTAAAGCAAAAATAGCATCAAAAAACTTTCAGATTGTTAGTGATAGCTGTTGGATTTTTATGCTTGGCATCTGTCTGTTCCAATTATATTGTCATTAATTTCACCTTCATCTGCATGAAAAATGACTATACCGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36045</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>49229</contig_pos>
        <strand></strand>
        <context>aaattaaaGC[C/T]RTAAAAATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTTACTTCGAAAAATTAAAATTTTAAAAATTCAAAAAAATTAAAGC</left_flank>
        <right_flank>GTAAAAATTCGAAAATTGAACTTCCTGAAACATTTTTTTATTCCAGATTA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTTCTGAGATTCTGAGATTCTGAGATTATGAGATTCTGAGATCCTGCGATTCTGAGATTCTGCGATTCAGCAAATCTGCGATTCTGAGATTCTCAGATTCGGGAATTCGGAGGTTCTGAGATTCTAAGATTCTGAGATTCTGAACTTTGGAAATGCGGAATTCCGGAAATTTTTACCGATTCGTTTACCAAATCGGATATTCGGAATTCTAATTTCTCATAATTTTTCCAGAAACTTCTAATCAGTCCTGTAATCCTTTGTGTCTGGTTAAATGCATTTTTCGATTTAACAGCTGCAATTATGTTCTCCACTTATGTACCAATTTATTTACACGAAGTCCTGAAATTCGAAATAAAGACCACCGGATTTTTATCATCTTTAATTCTGGGAATGTCCATTCCAGTTCGGATATTTTTTGCAATTATCAGTGATAAGGTTAAGTGAGTTTTTTTTACTTCGAAAAATTAAAATTTTAAAAATTCAAAAAAATTAAAGCCGTAAAAATTCGAAAATTGAACTTCCTGAAACATTTTTTTATTCCAGATTAATAAGTGAAATGCTGAAAATCCACATTTTCAACACAGTCTCTGTTGGAGTCTCGGGAATATTTTTCACGTCTATTGGGTAATTTTTTTTTTTTCAATTCGAATTTTTTTCTGAATTTTTTCTGAAATTTCAGATTCATACCAATTGAGTACAGTGGATGGTCGGTTTTCTGTTTTGTCATGTGTATGTGTTGTATTGGAGTGAATTCTGGTGGATTTTATAAATCTGCATATTATCATTCGAGGTGAGAATCTCGAAATTCAGAAATTCAAAAATTCGGAATTGTTTTCTTGATTTTCAGAATTTTGGAATTTCATAAATCCAGAAATTCTGAAATTTAGAAAATTTAAAAGAAAAGAAGCCTCCAGGAATTTTCAAAATAACAATATCATTATTTTCTCAATTTCGCCGAATTTTGAAATTTTCTTAAAATGTATATCTGAAAAAACTA</canonical>
            <polymorphic>GATTTTCTGAGATTCTGAGATTCTGAGATTATGAGATTCTGAGATCCTGCGATTCTGAGATTCTGCGATTCAGCAAATCTGCGATTCTGAGATTCTCAGATTCGGGAATTCGGAGGTTCTGAGATTCTAAGATTCTGAGATTCTGAACTTTGGAAATGCGGAATTCCGGAAATTTTTACCGATTCGTTTACCAAATCGGATATTCGGAATTCTAATTTCTCATAATTTTTCCAGAAACTTCTAATCAGTCCTGTAATCCTTTGTGTCTGGTTAAATGCATTTTTCGATTTAACAGCTGCAATTATGTTCTCCACTTATGTACCAATTTATTTACACGAAGTCCTGAAATTCGAAATAAAGACCACCGGATTTTTATCATCTTTAATTCTGGGAATGTCCATTCCAGTTCGGATATTTTTTGCAATTATCAGTGATAAGGTTAAGTGAGTTTTTTTTACTTCGAAAAATTAAAATTTTAAAAATTCAAAAAAATTAAAGCYGTAAAAATTCGAAAATTGAACTTCCTGAAACATTTTTTTATTCCAGATTAATAAGTGAAATGCTGAAAATCCACATTTTCAACACAGTCTCTGTTGGAGTCTCGGGAATATTTTTCACGTCTATTGGGTAATTTTTTTTTTTTCAATTCGAATTTTTTTCTGAATTTTTTCTGAAATTTCAGATTCATACCAATTGAGTACAGTGGATGGTCGGTTTTCTGTTTTGTCATGTGTATGTGTTGTATTGGAGTGAATTCTGGTGGATTTTATAAATCTGCATATTATCATTCGAGGTGAGAATCTCGAAATTCAGAAATTCAAAAATTCGGAATTGTTTTCTTGATTTTCAGAATTTTGGAATTTCATAAATCCAGAAATTCTGAAATTTAGAAAATTTAAAAGAAAAGAAGCCTCCAGGAATTTTCAAAATAACAATATCATTATTTTCTCAATTTCGCCGAATTTTGAAATTTTCTTAAAATGTATATCTGAAAAAACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>412 295 203 90</canonical_bands>
                <polymorphic_bands>615 295 90</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAATTTATTTACACGAAGTCC</pcr_primer_p1>
		<pcr_primer_p2>GGATTTTCAGCATTTCACTTAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCAATTTATTTACACGAAGTCCTGAAATTCGAAATAAAGACCACCGGATTTTTATCATCTTTAATTCTGGGAATGTCCATTCCAGTTCGGATATTTTTTGCAATTATCAGTGATAAGGTTAAGTGAGTTTTTTTTACTTCGAAAAATTAAAATTTTAAAAATTCAAAAAAATTAAAGCCGTAAAAATTCGAAAATTGAACTTCCTGAAACATTTTTTTATTCCAGATTAATAAGTGAAATGCTGAAAATCC</canonical_amplicon>
		<polymorphic_amplicon>CCAATTTATTTACACGAAGTCCTGAAATTCGAAATAAAGACCACCGGATTTTTATCATCTTTAATTCTGGGAATGTCCATTCCAGTTCGGATATTTTTTGCAATTATCAGTGATAAGGTTAAGTGAGTTTTTTTTACTTCGAAAAATTAAAATTTTAAAAATTCAAAAAAATTAAAGCYGTAAAAATTCGAAAATTGAACTTCCTGAAACATTTTTTTATTCCAGATTAATAAGTGAAATGCTGAAAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36046</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>49230</contig_pos>
        <strand></strand>
        <context>aattaaaGCY[G/A]TAAAAATTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTTTACTTCGAAAAATTAAAATTTTAAAAATTCAAAAAAATTAAAGCC</left_flank>
        <right_flank>TAAAAATTCGAAAATTGAACTTCCTGAAACATTTTTTTATTCCAGATTAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTCTGAGATTCTGAGATTCTGAGATTATGAGATTCTGAGATCCTGCGATTCTGAGATTCTGCGATTCAGCAAATCTGCGATTCTGAGATTCTCAGATTCGGGAATTCGGAGGTTCTGAGATTCTAAGATTCTGAGATTCTGAACTTTGGAAATGCGGAATTCCGGAAATTTTTACCGATTCGTTTACCAAATCGGATATTCGGAATTCTAATTTCTCATAATTTTTCCAGAAACTTCTAATCAGTCCTGTAATCCTTTGTGTCTGGTTAAATGCATTTTTCGATTTAACAGCTGCAATTATGTTCTCCACTTATGTACCAATTTATTTACACGAAGTCCTGAAATTCGAAATAAAGACCACCGGATTTTTATCATCTTTAATTCTGGGAATGTCCATTCCAGTTCGGATATTTTTTGCAATTATCAGTGATAAGGTTAAGTGAGTTTTTTTTACTTCGAAAAATTAAAATTTTAAAAATTCAAAAAAATTAAAGCCGTAAAAATTCGAAAATTGAACTTCCTGAAACATTTTTTTATTCCAGATTAATAAGTGAAATGCTGAAAATCCACATTTTCAACACAGTCTCTGTTGGAGTCTCGGGAATATTTTTCACGTCTATTGGGTAATTTTTTTTTTTTCAATTCGAATTTTTTTCTGAATTTTTTCTGAAATTTCAGATTCATACCAATTGAGTACAGTGGATGGTCGGTTTTCTGTTTTGTCATGTGTATGTGTTGTATTGGAGTGAATTCTGGTGGATTTTATAAATCTGCATATTATCATTCGAGGTGAGAATCTCGAAATTCAGAAATTCAAAAATTCGGAATTGTTTTCTTGATTTTCAGAATTTTGGAATTTCATAAATCCAGAAATTCTGAAATTTAGAAAATTTAAAAGAAAAGAAGCCTCCAGGAATTTTCAAAATAACAATATCATTATTTTCTCAATTTCGCCGAATTTTGAAATTTTCTTAAAATGTATATCTGAAAAAACTAC</canonical>
            <polymorphic>ATTTTCTGAGATTCTGAGATTCTGAGATTATGAGATTCTGAGATCCTGCGATTCTGAGATTCTGCGATTCAGCAAATCTGCGATTCTGAGATTCTCAGATTCGGGAATTCGGAGGTTCTGAGATTCTAAGATTCTGAGATTCTGAACTTTGGAAATGCGGAATTCCGGAAATTTTTACCGATTCGTTTACCAAATCGGATATTCGGAATTCTAATTTCTCATAATTTTTCCAGAAACTTCTAATCAGTCCTGTAATCCTTTGTGTCTGGTTAAATGCATTTTTCGATTTAACAGCTGCAATTATGTTCTCCACTTATGTACCAATTTATTTACACGAAGTCCTGAAATTCGAAATAAAGACCACCGGATTTTTATCATCTTTAATTCTGGGAATGTCCATTCCAGTTCGGATATTTTTTGCAATTATCAGTGATAAGGTTAAGTGAGTTTTTTTTACTTCGAAAAATTAAAATTTTAAAAATTCAAAAAAATTAAAGCCRTAAAAATTCGAAAATTGAACTTCCTGAAACATTTTTTTATTCCAGATTAATAAGTGAAATGCTGAAAATCCACATTTTCAACACAGTCTCTGTTGGAGTCTCGGGAATATTTTTCACGTCTATTGGGTAATTTTTTTTTTTTCAATTCGAATTTTTTTCTGAATTTTTTCTGAAATTTCAGATTCATACCAATTGAGTACAGTGGATGGTCGGTTTTCTGTTTTGTCATGTGTATGTGTTGTATTGGAGTGAATTCTGGTGGATTTTATAAATCTGCATATTATCATTCGAGGTGAGAATCTCGAAATTCAGAAATTCAAAAATTCGGAATTGTTTTCTTGATTTTCAGAATTTTGGAATTTCATAAATCCAGAAATTCTGAAATTTAGAAAATTTAAAAGAAAAGAAGCCTCCAGGAATTTTCAAAATAACAATATCATTATTTTCTCAATTTCGCCGAATTTTGAAATTTTCTTAAAATGTATATCTGAAAAAACTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAATTTATTTACACGAAGTCC</pcr_primer_p1>
		<pcr_primer_p2>GGATTTTCAGCATTTCACTTAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCAATTTATTTACACGAAGTCCTGAAATTCGAAATAAAGACCACCGGATTTTTATCATCTTTAATTCTGGGAATGTCCATTCCAGTTCGGATATTTTTTGCAATTATCAGTGATAAGGTTAAGTGAGTTTTTTTTACTTCGAAAAATTAAAATTTTAAAAATTCAAAAAAATTAAAGCCGTAAAAATTCGAAAATTGAACTTCCTGAAACATTTTTTTATTCCAGATTAATAAGTGAAATGCTGAAAATCC</canonical_amplicon>
		<polymorphic_amplicon>CCAATTTATTTACACGAAGTCCTGAAATTCGAAATAAAGACCACCGGATTTTTATCATCTTTAATTCTGGGAATGTCCATTCCAGTTCGGATATTTTTTGCAATTATCAGTGATAAGGTTAAGTGAGTTTTTTTTACTTCGAAAAATTAAAATTTTAAAAATTCAAAAAAATTAAAGCCRTAAAAATTCGAAAATTGAACTTCCTGAAACATTTTTTTATTCCAGATTAATAAGTGAAATGCTGAAAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36047</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>49557</contig_pos>
        <strand></strand>
        <context>TCAAAAATTC[G/A]GAATTGTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CATATTATCATTCGAGGTGAGAATCTCGAAATTCAGAAATTCAAAAATTC</left_flank>
        <right_flank>GAATTGTTTTCTTGATTTTCAGAATTTTGGAATTTCATAAATCCAGAAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTACACGAAGTCCTGAAATTCGAAATAAAGACCACCGGATTTTTATCATCTTTAATTCTGGGAATGTCCATTCCAGTTCGGATATTTTTTGCAATTATCAGTGATAAGGTTAAGTGAGTTTTTTTTACTTCGAAAAATTAAAATTTTAAAAATTCAAAAAAATTAAAGCCGTAAAAATTCGAAAATTGAACTTCCTGAAACATTTTTTTATTCCAGATTAATAAGTGAAATGCTGAAAATCCACATTTTCAACACAGTCTCTGTTGGAGTCTCGGGAATATTTTTCACGTCTATTGGGTAATTTTTTTTTTTTCAATTCGAATTTTTTTCTGAATTTTTTCTGAAATTTCAGATTCATACCAATTGAGTACAGTGGATGGTCGGTTTTCTGTTTTGTCATGTGTATGTGTTGTATTGGAGTGAATTCTGGTGGATTTTATAAATCTGCATATTATCATTCGAGGTGAGAATCTCGAAATTCAGAAATTCAAAAATTCGGAATTGTTTTCTTGATTTTCAGAATTTTGGAATTTCATAAATCCAGAAATTCTGAAATTTAGAAAATTTAAAAGAAAAGAAGCCTCCAGGAATTTTCAAAATAACAATATCATTATTTTCTCAATTTCGCCGAATTTTGAAATTTTCTTAAAATGTATATCTGAAAAAACTACTAGGCATTCTGAAACTTTGAAATCTGAAAAATCTGAAAATCCTAATTTTGCGCAACTCAAATTTTGAAAATTTGCCAATAAAAAAAATTTTCAGACAATTCAACCCAATTGTGATTACTGCGATTCAGTGGATAAAATGTTTGGCATTATTCGTTGCTCCGGCTCTTGTTAATATTTTTGTATCCGACGAATCAAATCGTTCTCAATGGACTTGGGTTTTTGCAATTATCGGCGGGTGTATGGTTCTAGTATGTTTAAAGAAAACCTGAATAAAACTAAAAATTTGTTTTTCAGACAAATTTGATCTCATTCTTCATTTTGACGGAT</canonical>
            <polymorphic>ATTTACACGAAGTCCTGAAATTCGAAATAAAGACCACCGGATTTTTATCATCTTTAATTCTGGGAATGTCCATTCCAGTTCGGATATTTTTTGCAATTATCAGTGATAAGGTTAAGTGAGTTTTTTTTACTTCGAAAAATTAAAATTTTAAAAATTCAAAAAAATTAAAGCCGTAAAAATTCGAAAATTGAACTTCCTGAAACATTTTTTTATTCCAGATTAATAAGTGAAATGCTGAAAATCCACATTTTCAACACAGTCTCTGTTGGAGTCTCGGGAATATTTTTCACGTCTATTGGGTAATTTTTTTTTTTTCAATTCGAATTTTTTTCTGAATTTTTTCTGAAATTTCAGATTCATACCAATTGAGTACAGTGGATGGTCGGTTTTCTGTTTTGTCATGTGTATGTGTTGTATTGGAGTGAATTCTGGTGGATTTTATAAATCTGCATATTATCATTCGAGGTGAGAATCTCGAAATTCAGAAATTCAAAAATTCRGAATTGTTTTCTTGATTTTCAGAATTTTGGAATTTCATAAATCCAGAAATTCTGAAATTTAGAAAATTTAAAAGAAAAGAAGCCTCCAGGAATTTTCAAAATAACAATATCATTATTTTCTCAATTTCGCCGAATTTTGAAATTTTCTTAAAATGTATATCTGAAAAAACTACTAGGCATTCTGAAACTTTGAAATCTGAAAAATCTGAAAATCCTAATTTTGCGCAACTCAAATTTTGAAAATTTGCCAATAAAAAAAATTTTCAGACAATTCAACCCAATTGTGATTACTGCGATTCAGTGGATAAAATGTTTGGCATTATTCGTTGCTCCGGCTCTTGTTAATATTTTTGTATCCGACGAATCAAATCGTTCTCAATGGACTTGGGTTTTTGCAATTATCGGCGGGTGTATGGTTCTAGTATGTTTAAAGAAAACCTGAATAAAACTAAAAATTTGTTTTTCAGACAAATTTGATCTCATTCTTCATTTTGACGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTGTTTTGTCATGTGTATG</pcr_primer_p1>
		<pcr_primer_p2>GCGAAATTGAGAAAATAATGATA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTGTTTTGTCATGTGTATGTGTTGTATTGGAGTGAATTCTGGTGGATTTTATAAATCTGCATATTATCATTCGAGGTGAGAATCTCGAAATTCAGAAATTCAAAAATTCGGAATTGTTTTCTTGATTTTCAGAATTTTGGAATTTCATAAATCCAGAAATTCTGAAATTTAGAAAATTTAAAAGAAAAGAAGCCTCCAGGAATTTTCAAAATAACAATATCATTATTTTCTCAATTTCGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTGTTTTGTCATGTGTATGTGTTGTATTGGAGTGAATTCTGGTGGATTTTATAAATCTGCATATTATCATTCGAGGTGAGAATCTCGAAATTCAGAAATTCAAAAATTCRGAATTGTTTTCTTGATTTTCAGAATTTTGGAATTTCATAAATCCAGAAATTCTGAAATTTAGAAAATTTAAAAGAAAAGAAGCCTCCAGGAATTTTCAAAATAACAATATCATTATTTTCTCAATTTCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36048</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>49639</contig_pos>
        <strand></strand>
        <context>AAGAAAAGAA[G/A]CCTCCAGGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTTCATAAATCCAGAAATTCTGAAATTTAGAAAATTTAAAAGAAAAGAA</left_flank>
        <right_flank>CCTCCAGGAATTTTCAAAATAACAATATCATTATTTTCTCAATTTCGCCG</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATATTTTTTGCAATTATCAGTGATAAGGTTAAGTGAGTTTTTTTTACTTCGAAAAATTAAAATTTTAAAAATTCAAAAAAATTAAAGCCGTAAAAATTCGAAAATTGAACTTCCTGAAACATTTTTTTATTCCAGATTAATAAGTGAAATGCTGAAAATCCACATTTTCAACACAGTCTCTGTTGGAGTCTCGGGAATATTTTTCACGTCTATTGGGTAATTTTTTTTTTTTCAATTCGAATTTTTTTCTGAATTTTTTCTGAAATTTCAGATTCATACCAATTGAGTACAGTGGATGGTCGGTTTTCTGTTTTGTCATGTGTATGTGTTGTATTGGAGTGAATTCTGGTGGATTTTATAAATCTGCATATTATCATTCGAGGTGAGAATCTCGAAATTCAGAAATTCAAAAATTCGGAATTGTTTTCTTGATTTTCAGAATTTTGGAATTTCATAAATCCAGAAATTCTGAAATTTAGAAAATTTAAAAGAAAAGAAGCCTCCAGGAATTTTCAAAATAACAATATCATTATTTTCTCAATTTCGCCGAATTTTGAAATTTTCTTAAAATGTATATCTGAAAAAACTACTAGGCATTCTGAAACTTTGAAATCTGAAAAATCTGAAAATCCTAATTTTGCGCAACTCAAATTTTGAAAATTTGCCAATAAAAAAAATTTTCAGACAATTCAACCCAATTGTGATTACTGCGATTCAGTGGATAAAATGTTTGGCATTATTCGTTGCTCCGGCTCTTGTTAATATTTTTGTATCCGACGAATCAAATCGTTCTCAATGGACTTGGGTTTTTGCAATTATCGGCGGGTGTATGGTTCTAGTATGTTTAAAGAAAACCTGAATAAAACTAAAAATTTGTTTTTCAGACAAATTTGATCTCATTCTTCATTTTGACGGATAAGTCTGCGGAATGGACAGAACAAACGGAGAAATTTTGAAATCAATGTTTTATGTTTAAGACTTTATGAACTTTTGTAGAAT</canonical>
            <polymorphic>GATATTTTTTGCAATTATCAGTGATAAGGTTAAGTGAGTTTTTTTTACTTCGAAAAATTAAAATTTTAAAAATTCAAAAAAATTAAAGCCGTAAAAATTCGAAAATTGAACTTCCTGAAACATTTTTTTATTCCAGATTAATAAGTGAAATGCTGAAAATCCACATTTTCAACACAGTCTCTGTTGGAGTCTCGGGAATATTTTTCACGTCTATTGGGTAATTTTTTTTTTTTCAATTCGAATTTTTTTCTGAATTTTTTCTGAAATTTCAGATTCATACCAATTGAGTACAGTGGATGGTCGGTTTTCTGTTTTGTCATGTGTATGTGTTGTATTGGAGTGAATTCTGGTGGATTTTATAAATCTGCATATTATCATTCGAGGTGAGAATCTCGAAATTCAGAAATTCAAAAATTCGGAATTGTTTTCTTGATTTTCAGAATTTTGGAATTTCATAAATCCAGAAATTCTGAAATTTAGAAAATTTAAAAGAAAAGAARCCTCCAGGAATTTTCAAAATAACAATATCATTATTTTCTCAATTTCGCCGAATTTTGAAATTTTCTTAAAATGTATATCTGAAAAAACTACTAGGCATTCTGAAACTTTGAAATCTGAAAAATCTGAAAATCCTAATTTTGCGCAACTCAAATTTTGAAAATTTGCCAATAAAAAAAATTTTCAGACAATTCAACCCAATTGTGATTACTGCGATTCAGTGGATAAAATGTTTGGCATTATTCGTTGCTCCGGCTCTTGTTAATATTTTTGTATCCGACGAATCAAATCGTTCTCAATGGACTTGGGTTTTTGCAATTATCGGCGGGTGTATGGTTCTAGTATGTTTAAAGAAAACCTGAATAAAACTAAAAATTTGTTTTTCAGACAAATTTGATCTCATTCTTCATTTTGACGGATAAGTCTGCGGAATGGACAGAACAAACGGAGAAATTTTGAAATCAATGTTTTATGTTTAAGACTTTATGAACTTTTGTAGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>412 253 247 88</canonical_bands>
                <polymorphic_bands>665 247 88</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGAATTTCATAAATCCAGAA</pcr_primer_p1>
		<pcr_primer_p2>AATTGGGTTGAATTGTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TGGAATTTCATAAATCCAGAAATTCTGAAATTTAGAAAATTTAAAAGAAAAGAAGCCTCCAGGAATTTTCAAAATAACAATATCATTATTTTCTCAATTTCGCCGAATTTTGAAATTTTCTTAAAATGTATATCTGAAAAAACTACTAGGCATTCTGAAACTTTGAAATCTGAAAAATCTGAAAATCCTAATTTTGCGCAACTCAAATTTTGAAAATTTGCCAATAAAAAAAATTTTCAGACAATTCAACCCAATT</canonical_amplicon>
		<polymorphic_amplicon>TGGAATTTCATAAATCCAGAAATTCTGAAATTTAGAAAATTTAAAAGAAAAGAARCCTCCAGGAATTTTCAAAATAACAATATCATTATTTTCTCAATTTCGCCGAATTTTGAAATTTTCTTAAAATGTATATCTGAAAAAACTACTAGGCATTCTGAAACTTTGAAATCTGAAAAATCTGAAAATCCTAATTTTGCGCAACTCAAATTTTGAAAATTTGCCAATAAAAAAAATTTTCAGACAATTCAACCCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36049</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>91079</contig_pos>
        <strand>+</strand>
        <context>AAATGAAGCC[A/T]GACTCCACGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTGGGGTTCAACAGCGACGTGACGTCATCGGAAAACGCGAAATGAAGCC</left_flank>
        <right_flank>GACTCCACGAATATGGACTTGTATCAAGCTTTAAGCTCTATTGGTGAAAG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATATGTATTTCCATCACTTTTCGCCATTTTTTTCTCTTTTTGCTTTCCAGAGATGACCACAAAACTAGAAGAATTGGATTCGCCTTCCTCGTTGCCTACTATAGAATCTTCGATGTTGCCGCAAAGAGAACGCGCCAGTTGTGCTGTATGCCGAGAGGAGGGCGACGGGTTTCATTTTGGTGCAGAAGCATGCAGGTTAGAAAGAATTCTTCTAGATTTTCATCTGAAAATGACGAATTTCCAGAGCTTGCGCTGCATTCTTCCGTAGAAGTGTATCACTGGACAAACGTTATCTCTGTCGGGGAAACAATGATTGTGATATTGCTGCAAGTAATTTATTTTTGAATTTAGATAACAAATATAAAAAAAAATGCCAAGCTTCAGATGTCCGCTGTATGTGTCGCGCGTGTCGCTTTACCAAGTGTCTCGAAGTCGGCATGAATCCAGCTGGGGTTCAACAGCGACGTGACGTCATCGGAAAACGCGAAATGAAGCCTGACTCCACGAATATGGACTTGTATCAAGCTTTAAGCTCTATTGGTGAAAGTGTTCTGCCCACTACGAGTAGTCCGACGCCACTGGTTGGCGATTTGCCAGCGGAATTGATCGATGCGATGCCGATTTTGACGAAAATGCGAGTGAACTATCGGAAGATGGATAATGCGAGAATCGTGATTCATCGCAAGGATGGGCAGAGTCTTTTTAAGGTAAAAATCGGGGGGGGGGGGGGGGGGAAATTGAAAAAATCAAGAAAATTTGGTTGAAATTGTGTCGAAAAGCTGACATCCGGATTTCCGGACTTACAGACAGATTTTCTAGATTTTTTATTGTTTTTAGGGCGTTTTTGGTCATTTTTTGAAACAAAAGGTGATTTGAAATTTAAAAACACCAAATCAGCTAAAAACAACAAAAAAATATGAGAAATTGTGTCAGAAAGCGGACATCCGGATTTTCGGATTTACGAACAGATTTTCTCGATTTTTATGGTTTTTCGATC</canonical>
            <polymorphic>ATTATATGTATTTCCATCACTTTTCGCCATTTTTTTCTCTTTTTGCTTTCCAGAGATGACCACAAAACTAGAAGAATTGGATTCGCCTTCCTCGTTGCCTACTATAGAATCTTCGATGTTGCCGCAAAGAGAACGCGCCAGTTGTGCTGTATGCCGAGAGGAGGGCGACGGGTTTCATTTTGGTGCAGAAGCATGCAGGTTAGAAAGAATTCTTCTAGATTTTCATCTGAAAATGACGAATTTCCAGAGCTTGCGCTGCATTCTTCCGTAGAAGTGTATCACTGGACAAACGTTATCTCTGTCGGGGAAACAATGATTGTGATATTGCTGCAAGTAATTTATTTTTGAATTTAGATAACAAATATAAAAAAAAATGCCAAGCTTCAGATGTCCGCTGTATGTGTCGCGCGTGTCGCTTTACCAAGTGTCTCGAAGTCGGCATGAATCCAGCTGGGGTTCAACAGCGACGTGACGTCATCGGAAAACGCGAAATGAAGCCWGACTCCACGAATATGGACTTGTATCAAGCTTTAAGCTCTATTGGTGAAAGTGTTCTGCCCACTACGAGTAGTCCGACGCCACTGGTTGGCGATTTGCCAGCGGAATTGATCGATGCGATGCCGATTTTGACGAAAATGCGAGTGAACTATCGGAAGATGGATAATGCGAGAATCGTGATTCATCGCAAGGATGGGCAGAGTCTTTTTAAGGTAAAAATCGGGGGGGGGGGGGGGGGGAAATTGAAAAAATCAAGAAAATTTGGTTGAAATTGTGTCGAAAAGCTGACATCCGGATTTCCGGACTTACAGACAGATTTTCTAGATTTTTTATTGTTTTTAGGGCGTTTTTGGTCATTTTTTGAAACAAAAGGTGATTTGAAATTTAAAAACACCAAATCAGCTAAAAACAACAAAAAAATATGAGAAATTGTGTCAGAAAGCGGACATCCGGATTTTCGGATTTACGAACAGATTTTCTCGATTTTTATGGTTTTTCGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTACCAAGTGTCTCGAAGTC</pcr_primer_p1>
		<pcr_primer_p2>CATTATCCATCTTCCGATAGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTTTACCAAGTGTCTCGAAGTCGGCATGAATCCAGCTGGGGTTCAACAGCGACGTGACGTCATCGGAAAACGCGAAATGAAGCCTGACTCCACGAATATGGACTTGTATCAAGCTTTAAGCTCTATTGGTGAAAGTGTTCTGCCCACTACGAGTAGTCCGACGCCACTGGTTGGCGATTTGCCAGCGGAATTGATCGATGCGATGCCGATTTTGACGAAAATGCGAGTGAACTATCGGAAGATGGATAATG</canonical_amplicon>
		<polymorphic_amplicon>CTTTACCAAGTGTCTCGAAGTCGGCATGAATCCAGCTGGGGTTCAACAGCGACGTGACGTCATCGGAAAACGCGAAATGAAGCCWGACTCCACGAATATGGACTTGTATCAAGCTTTAAGCTCTATTGGTGAAAGTGTTCTGCCCACTACGAGTAGTCCGACGCCACTGGTTGGCGATTTGCCAGCGGAATTGATCGATGCGATGCCGATTTTGACGAAAATGCGAGTGAACTATCGGAAGATGGATAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36053</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>132694</contig_pos>
        <strand></strand>
        <context>AAAATTGAAA[G/A]AAACTAWTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCTTTTTTTTCGATTTTTTTTCGAATTTTCGAATTTTCTTAAAATTGAAA</left_flank>
        <right_flank>AAACTATTTTTTCAGGGTAAGTCAACTGCCAAGCTTGAAGAATCATGTCT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCCCGTTTTCTCAAGAAGATCCACCTACTTGGAATCCTCGGAAAAAGAGGAGGTAAACTCTTCGGAAAGACACTGTGTATGTAACACTTTTGCTCCTCTTGGTTGGATATATTGTGTGCTTAGTTCTTGTTACTTTTTTCTTGCTCTTGGTTTTGAGCTCCTTTTCTTTTTCCTGGTACTTGGTACTAGTCGAGAGCTTCTTTTTTTTCGGGGGGGAGTAGATTTTTTAATTGTTGCTGATTTGCTGACACACATTTCAGATATGTCCAAGACTTTTCCCGAAATTTTTATAATGTAATTTTTGACCGTTTTTTAATGTTTAAATTGTTATACCATATTTTTTCTAATGATATATTCTGAAGCTTGTTAATCTTTTTTGTAAATTCTAAGATTTTTAGCATTGTCCACATTTTTAGAATTTTCCACCGATTTTTTACAGAAATTCTAATCTTTTTTTTCGATTTTTTTTCGAATTTTCGAATTTTCTTAAAATTGAAAGAAACTATTTTTTCAGGGTAAGTCAACTGCCAAGCTTGAAGAATCATGTCTGACGAGGAATAGTGAGTAGAAATTTTAAAATTTTGAATTTTTTGAGTTCCTAGAATCTTGAATTCCTGGATTCTTGGAAGTTTGGATTCTAAGATACTGGATTCCTGGATGTTTGAATTCCTGTGTTTCTAGTTTCCCGGAGATCCTAGATTCCTCAATTTTTGGATTCCTGCATTCAGGATTTTCCAGTTTCTGGATTCCTAAATTCCCAGTTTCCTGAATTCCCGGATCCCTAGACTTCTGGATTCTGTGATTCCAGAACTCCTAGATTCCTGGATTCATATGTTCCAAGGTCTCTAGCTATCTGGAATTTTGGATTCCTGAATTCCCAAGATATCTAGAATTTTGAATTCAGGGATTCTTGAATTTCCTAGGTTCCCGGATTTCCAGGTACTCTTATTCCTAAGTTCTCGGATCCCTAGACTCCTGAACTTTAAAATTCTTGAACTC</canonical>
            <polymorphic>CCCCCGTTTTCTCAAGAAGATCCACCTACTTGGAATCCTCGGAAAAAGAGGAGGTAAACTCTTCGGAAAGACACTGTGTATGTAACACTTTTGCTCCTCTTGGTTGGATATATTGTGTGCTTAGTTCTTGTTACTTTTTTCTTGCTCTTGGTTTTGAGCTCCTTTTCTTTTTCCTGGTACTTGGTACTAGTCGAGAGCTTCTTTTTTTTCGGGGGGGAGTAGATTTTTTAATTGTTGCTGATTTGCTGACACACATTTCAGATATGTCCAAGACTTTTCCCGAAATTTTTATAATGTAATTTTTGACCGTTTTTTAATGTTTAAATTGTTATACCATATTTTTTCTAATGATATATTCTGAAGCTTGTTAATCTTTTTTGTAAATTCTAAGATTTTTAGCATTGTCCACATTTTTAGAATTTTCCACCGATTTTTTACAGAAATTCTAATCTTTTTTTTCGATTTTTTTTCGAATTTTCGAATTTTCTTAAAATTGAAARAAACTATTTTTTCAGGGTAAGTCAACTGCCAAGCTTGAAGAATCATGTCTGACGAGGAATAGTGAGTAGAAATTTTAAAATTTTGAATTTTTTGAGTTCCTAGAATCTTGAATTCCTGGATTCTTGGAAGTTTGGATTCTAAGATACTGGATTCCTGGATGTTTGAATTCCTGTGTTTCTAGTTTCCCGGAGATCCTAGATTCCTCAATTTTTGGATTCCTGCATTCAGGATTTTCCAGTTTCTGGATTCCTAAATTCCCAGTTTCCTGAATTCCCGGATCCCTAGACTTCTGGATTCTGTGATTCCAGAACTCCTAGATTCCTGGATTCATATGTTCCAAGGTCTCTAGCTATCTGGAATTTTGGATTCCTGAATTCCCAAGATATCTAGAATTTTGAATTCAGGGATTCTTGAATTTCCTAGGTTCCCGGATTTCCAGGTACTCTTATTCCTAAGTTCTCGGATCCCTAGACTCCTGAACTTTAAAATTCTTGAACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACATTTTTAGAATTTTCCAC</pcr_primer_p1>
		<pcr_primer_p2>AATCCAGTATCTTAGAATCCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCACATTTTTAGAATTTTCCACCGATTTTTTACAGAAATTCTAATCTTTTTTTTCGATTTTTTTTCGAATTTTCGAATTTTCTTAAAATTGAAAGAAACTATTTTTTCAGGGTAAGTCAACTGCCAAGCTTGAAGAATCATGTCTGACGAGGAATAGTGAGTAGAAATTTTAAAATTTTGAATTTTTTGAGTTCCTAGAATCTTGAATTCCTGGATTCTTGGAAGTTTGGATTCTAAGATACTGGATT</canonical_amplicon>
		<polymorphic_amplicon>CCACATTTTTAGAATTTTCCACCGATTTTTTACAGAAATTCTAATCTTTTTTTTCGATTTTTTTTCGAATTTTCGAATTTTCTTAAAATTGAAARAAACTATTTTTTCAGGGTAAGTCAACTGCCAAGCTTGAAGAATCATGTCTGACGAGGAATAGTGAGTAGAAATTTTAAAATTTTGAATTTTTTGAGTTCCTAGAATCTTGAATTCCTGGATTCTTGGAAGTTTGGATTCTAAGATACTGGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36054</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>132701</contig_pos>
        <strand></strand>
        <context>AAARAAACTA[T/A]TTTTTCAGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTCGATTTTTTTTCGAATTTTCGAATTTTCTTAAAATTGAAAGAAACTA</left_flank>
        <right_flank>TTTTTCAGGGTAAGTCAACTGCCAAGCTTGAAGAATCATGTCTGACGAGG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTCAAGAAGATCCACCTACTTGGAATCCTCGGAAAAAGAGGAGGTAAACTCTTCGGAAAGACACTGTGTATGTAACACTTTTGCTCCTCTTGGTTGGATATATTGTGTGCTTAGTTCTTGTTACTTTTTTCTTGCTCTTGGTTTTGAGCTCCTTTTCTTTTTCCTGGTACTTGGTACTAGTCGAGAGCTTCTTTTTTTTCGGGGGGGAGTAGATTTTTTAATTGTTGCTGATTTGCTGACACACATTTCAGATATGTCCAAGACTTTTCCCGAAATTTTTATAATGTAATTTTTGACCGTTTTTTAATGTTTAAATTGTTATACCATATTTTTTCTAATGATATATTCTGAAGCTTGTTAATCTTTTTTGTAAATTCTAAGATTTTTAGCATTGTCCACATTTTTAGAATTTTCCACCGATTTTTTACAGAAATTCTAATCTTTTTTTTCGATTTTTTTTCGAATTTTCGAATTTTCTTAAAATTGAAAGAAACTATTTTTTCAGGGTAAGTCAACTGCCAAGCTTGAAGAATCATGTCTGACGAGGAATAGTGAGTAGAAATTTTAAAATTTTGAATTTTTTGAGTTCCTAGAATCTTGAATTCCTGGATTCTTGGAAGTTTGGATTCTAAGATACTGGATTCCTGGATGTTTGAATTCCTGTGTTTCTAGTTTCCCGGAGATCCTAGATTCCTCAATTTTTGGATTCCTGCATTCAGGATTTTCCAGTTTCTGGATTCCTAAATTCCCAGTTTCCTGAATTCCCGGATCCCTAGACTTCTGGATTCTGTGATTCCAGAACTCCTAGATTCCTGGATTCATATGTTCCAAGGTCTCTAGCTATCTGGAATTTTGGATTCCTGAATTCCCAAGATATCTAGAATTTTGAATTCAGGGATTCTTGAATTTCCTAGGTTCCCGGATTTCCAGGTACTCTTATTCCTAAGTTCTCGGATCCCTAGACTCCTGAACTTTAAAATTCTTGAACTCCTGGATT</canonical>
            <polymorphic>TTTCTCAAGAAGATCCACCTACTTGGAATCCTCGGAAAAAGAGGAGGTAAACTCTTCGGAAAGACACTGTGTATGTAACACTTTTGCTCCTCTTGGTTGGATATATTGTGTGCTTAGTTCTTGTTACTTTTTTCTTGCTCTTGGTTTTGAGCTCCTTTTCTTTTTCCTGGTACTTGGTACTAGTCGAGAGCTTCTTTTTTTTCGGGGGGGAGTAGATTTTTTAATTGTTGCTGATTTGCTGACACACATTTCAGATATGTCCAAGACTTTTCCCGAAATTTTTATAATGTAATTTTTGACCGTTTTTTAATGTTTAAATTGTTATACCATATTTTTTCTAATGATATATTCTGAAGCTTGTTAATCTTTTTTGTAAATTCTAAGATTTTTAGCATTGTCCACATTTTTAGAATTTTCCACCGATTTTTTACAGAAATTCTAATCTTTTTTTTCGATTTTTTTTCGAATTTTCGAATTTTCTTAAAATTGAAAGAAACTAWTTTTTCAGGGTAAGTCAACTGCCAAGCTTGAAGAATCATGTCTGACGAGGAATAGTGAGTAGAAATTTTAAAATTTTGAATTTTTTGAGTTCCTAGAATCTTGAATTCCTGGATTCTTGGAAGTTTGGATTCTAAGATACTGGATTCCTGGATGTTTGAATTCCTGTGTTTCTAGTTTCCCGGAGATCCTAGATTCCTCAATTTTTGGATTCCTGCATTCAGGATTTTCCAGTTTCTGGATTCCTAAATTCCCAGTTTCCTGAATTCCCGGATCCCTAGACTTCTGGATTCTGTGATTCCAGAACTCCTAGATTCCTGGATTCATATGTTCCAAGGTCTCTAGCTATCTGGAATTTTGGATTCCTGAATTCCCAAGATATCTAGAATTTTGAATTCAGGGATTCTTGAATTTCCTAGGTTCCCGGATTTCCAGGTACTCTTATTCCTAAGTTCTCGGATCCCTAGACTCCTGAACTTTAAAATTCTTGAACTCCTGGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACATTTTTAGAATTTTCCAC</pcr_primer_p1>
		<pcr_primer_p2>AATCCAGTATCTTAGAATCCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCACATTTTTAGAATTTTCCACCGATTTTTTACAGAAATTCTAATCTTTTTTTTCGATTTTTTTTCGAATTTTCGAATTTTCTTAAAATTGAAAGAAACTATTTTTTCAGGGTAAGTCAACTGCCAAGCTTGAAGAATCATGTCTGACGAGGAATAGTGAGTAGAAATTTTAAAATTTTGAATTTTTTGAGTTCCTAGAATCTTGAATTCCTGGATTCTTGGAAGTTTGGATTCTAAGATACTGGATT</canonical_amplicon>
		<polymorphic_amplicon>CCACATTTTTAGAATTTTCCACCGATTTTTTACAGAAATTCTAATCTTTTTTTTCGATTTTTTTTCGAATTTTCGAATTTTCTTAAAATTGAAAGAAACTAWTTTTTCAGGGTAAGTCAACTGCCAAGCTTGAAGAATCATGTCTGACGAGGAATAGTGAGTAGAAATTTTAAAATTTTGAATTTTTTGAGTTCCTAGAATCTTGAATTCCTGGATTCTTGGAAGTTTGGATTCTAAGATACTGGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36055</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>132818</contig_pos>
        <strand></strand>
        <context>TCCTGGATTC[T/C]TGGAAGTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTAAAATTTTGAATTTTTTGAGTTCCTAGAATCTTGAATTCCTGGATTC</left_flank>
        <right_flank>TGGAAGTTTGGATTCTAAGATACTGGATTCCTGGATGTTTGAATTCCTGT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTGTTACTTTTTTCTTGCTCTTGGTTTTGAGCTCCTTTTCTTTTTCCTGGTACTTGGTACTAGTCGAGAGCTTCTTTTTTTTCGGGGGGGAGTAGATTTTTTAATTGTTGCTGATTTGCTGACACACATTTCAGATATGTCCAAGACTTTTCCCGAAATTTTTATAATGTAATTTTTGACCGTTTTTTAATGTTTAAATTGTTATACCATATTTTTTCTAATGATATATTCTGAAGCTTGTTAATCTTTTTTGTAAATTCTAAGATTTTTAGCATTGTCCACATTTTTAGAATTTTCCACCGATTTTTTACAGAAATTCTAATCTTTTTTTTCGATTTTTTTTCGAATTTTCGAATTTTCTTAAAATTGAAAGAAACTATTTTTTCAGGGTAAGTCAACTGCCAAGCTTGAAGAATCATGTCTGACGAGGAATAGTGAGTAGAAATTTTAAAATTTTGAATTTTTTGAGTTCCTAGAATCTTGAATTCCTGGATTCTTGGAAGTTTGGATTCTAAGATACTGGATTCCTGGATGTTTGAATTCCTGTGTTTCTAGTTTCCCGGAGATCCTAGATTCCTCAATTTTTGGATTCCTGCATTCAGGATTTTCCAGTTTCTGGATTCCTAAATTCCCAGTTTCCTGAATTCCCGGATCCCTAGACTTCTGGATTCTGTGATTCCAGAACTCCTAGATTCCTGGATTCATATGTTCCAAGGTCTCTAGCTATCTGGAATTTTGGATTCCTGAATTCCCAAGATATCTAGAATTTTGAATTCAGGGATTCTTGAATTTCCTAGGTTCCCGGATTTCCAGGTACTCTTATTCCTAAGTTCTCGGATCCCTAGACTCCTGAACTTTAAAATTCTTGAACTCCTGGATTCCCGGATTCCTAGACTGCTGGAATTCCTGAATACGTGGATTCCCCGATTCCTGAGTTTCTAGATTCCTGAATTCCTAGAACCTGGATTTCCAGATTCCCGGAATCCCTAAACTCCTG</canonical>
            <polymorphic>TTCTTGTTACTTTTTTCTTGCTCTTGGTTTTGAGCTCCTTTTCTTTTTCCTGGTACTTGGTACTAGTCGAGAGCTTCTTTTTTTTCGGGGGGGAGTAGATTTTTTAATTGTTGCTGATTTGCTGACACACATTTCAGATATGTCCAAGACTTTTCCCGAAATTTTTATAATGTAATTTTTGACCGTTTTTTAATGTTTAAATTGTTATACCATATTTTTTCTAATGATATATTCTGAAGCTTGTTAATCTTTTTTGTAAATTCTAAGATTTTTAGCATTGTCCACATTTTTAGAATTTTCCACCGATTTTTTACAGAAATTCTAATCTTTTTTTTCGATTTTTTTTCGAATTTTCGAATTTTCTTAAAATTGAAAGAAACTATTTTTTCAGGGTAAGTCAACTGCCAAGCTTGAAGAATCATGTCTGACGAGGAATAGTGAGTAGAAATTTTAAAATTTTGAATTTTTTGAGTTCCTAGAATCTTGAATTCCTGGATTCYTGGAAGTTTGGATTCTAAGATACTGGATTCCTGGATGTTTGAATTCCTGTGTTTCTAGTTTCCCGGAGATCCTAGATTCCTCAATTTTTGGATTCCTGCATTCAGGATTTTCCAGTTTCTGGATTCCTAAATTCCCAGTTTCCTGAATTCCCGGATCCCTAGACTTCTGGATTCTGTGATTCCAGAACTCCTAGATTCCTGGATTCATATGTTCCAAGGTCTCTAGCTATCTGGAATTTTGGATTCCTGAATTCCCAAGATATCTAGAATTTTGAATTCAGGGATTCTTGAATTTCCTAGGTTCCCGGATTTCCAGGTACTCTTATTCCTAAGTTCTCGGATCCCTAGACTCCTGAACTTTAAAATTCTTGAACTCCTGGATTCCCGGATTCCTAGACTGCTGGAATTCCTGAATACGTGGATTCCCCGATTCCTGAGTTTCTAGATTCCTGAATTCCTAGAACCTGGATTTCCAGATTCCCGGAATCCCTAAACTCCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACGAGGAATAGTGAGTAGAAA</pcr_primer_p1>
		<pcr_primer_p2>GAATCACAGAATCCAGAAGTCTA</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TGACGAGGAATAGTGAGTAGAAATTTTAAAATTTTGAATTTTTTGAGTTCCTAGAATCTTGAATTCCTGGATTCTTGGAAGTTTGGATTCTAAGATACTGGATTCCTGGATGTTTGAATTCCTGTGTTTCTAGTTTCCCGGAGATCCTAGATTCCTCAATTTTTGGATTCCTGCATTCAGGATTTTCCAGTTTCTGGATTCCTAAATTCCCAGTTTCCTGAATTCCCGGATCCCTAGACTTCTGGATTCTGTGATTC</canonical_amplicon>
		<polymorphic_amplicon>TGACGAGGAATAGTGAGTAGAAATTTTAAAATTTTGAATTTTTTGAGTTCCTAGAATCTTGAATTCCTGGATTCYTGGAAGTTTGGATTCTAAGATACTGGATTCCTGGATGTTTGAATTCCTGTGTTTCTAGTTTCCCGGAGATCCTAGATTCCTCAATTTTTGGATTCCTGCATTCAGGATTTTCCAGTTTCTGGATTCCTAAATTCCCAGTTTCCTGAATTCCCGGATCCCTAGACTTCTGGATTCTGTGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36056</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>132877</contig_pos>
        <strand></strand>
        <context>GTGTTTCTAG[T/G]TTCCCGGAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TGGATTCTAAGATACTGGATTCCTGGATGTTTGAATTCCTGTGTTTCTAG</left_flank>
        <right_flank>TTCCCGGAGATCCTAGATTCCTCAATTTTTGGATTCCTGCATTCAGGATT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACTAGTCGAGAGCTTCTTTTTTTTCGGGGGGGAGTAGATTTTTTAATTGTTGCTGATTTGCTGACACACATTTCAGATATGTCCAAGACTTTTCCCGAAATTTTTATAATGTAATTTTTGACCGTTTTTTAATGTTTAAATTGTTATACCATATTTTTTCTAATGATATATTCTGAAGCTTGTTAATCTTTTTTGTAAATTCTAAGATTTTTAGCATTGTCCACATTTTTAGAATTTTCCACCGATTTTTTACAGAAATTCTAATCTTTTTTTTCGATTTTTTTTCGAATTTTCGAATTTTCTTAAAATTGAAAGAAACTATTTTTTCAGGGTAAGTCAACTGCCAAGCTTGAAGAATCATGTCTGACGAGGAATAGTGAGTAGAAATTTTAAAATTTTGAATTTTTTGAGTTCCTAGAATCTTGAATTCCTGGATTCTTGGAAGTTTGGATTCTAAGATACTGGATTCCTGGATGTTTGAATTCCTGTGTTTCTAGTTTCCCGGAGATCCTAGATTCCTCAATTTTTGGATTCCTGCATTCAGGATTTTCCAGTTTCTGGATTCCTAAATTCCCAGTTTCCTGAATTCCCGGATCCCTAGACTTCTGGATTCTGTGATTCCAGAACTCCTAGATTCCTGGATTCATATGTTCCAAGGTCTCTAGCTATCTGGAATTTTGGATTCCTGAATTCCCAAGATATCTAGAATTTTGAATTCAGGGATTCTTGAATTTCCTAGGTTCCCGGATTTCCAGGTACTCTTATTCCTAAGTTCTCGGATCCCTAGACTCCTGAACTTTAAAATTCTTGAACTCCTGGATTCCCGGATTCCTAGACTGCTGGAATTCCTGAATACGTGGATTCCCCGATTCCTGAGTTTCTAGATTCCTGAATTCCTAGAACCTGGATTTCCAGATTCCCGGAATCCCTAAACTCCTGAATTCTCAGGCTCTTAGACTCAGGGTTTCTTGAATTCTCGGATTCCTAGGTTCCGATAT</canonical>
            <polymorphic>GTACTAGTCGAGAGCTTCTTTTTTTTCGGGGGGGAGTAGATTTTTTAATTGTTGCTGATTTGCTGACACACATTTCAGATATGTCCAAGACTTTTCCCGAAATTTTTATAATGTAATTTTTGACCGTTTTTTAATGTTTAAATTGTTATACCATATTTTTTCTAATGATATATTCTGAAGCTTGTTAATCTTTTTTGTAAATTCTAAGATTTTTAGCATTGTCCACATTTTTAGAATTTTCCACCGATTTTTTACAGAAATTCTAATCTTTTTTTTCGATTTTTTTTCGAATTTTCGAATTTTCTTAAAATTGAAAGAAACTATTTTTTCAGGGTAAGTCAACTGCCAAGCTTGAAGAATCATGTCTGACGAGGAATAGTGAGTAGAAATTTTAAAATTTTGAATTTTTTGAGTTCCTAGAATCTTGAATTCCTGGATTCTTGGAAGTTTGGATTCTAAGATACTGGATTCCTGGATGTTTGAATTCCTGTGTTTCTAGKTTCCCGGAGATCCTAGATTCCTCAATTTTTGGATTCCTGCATTCAGGATTTTCCAGTTTCTGGATTCCTAAATTCCCAGTTTCCTGAATTCCCGGATCCCTAGACTTCTGGATTCTGTGATTCCAGAACTCCTAGATTCCTGGATTCATATGTTCCAAGGTCTCTAGCTATCTGGAATTTTGGATTCCTGAATTCCCAAGATATCTAGAATTTTGAATTCAGGGATTCTTGAATTTCCTAGGTTCCCGGATTTCCAGGTACTCTTATTCCTAAGTTCTCGGATCCCTAGACTCCTGAACTTTAAAATTCTTGAACTCCTGGATTCCCGGATTCCTAGACTGCTGGAATTCCTGAATACGTGGATTCCCCGATTCCTGAGTTTCTAGATTCCTGAATTCCTAGAACCTGGATTTCCAGATTCCCGGAATCCCTAAACTCCTGAATTCTCAGGCTCTTAGACTCAGGGTTTCTTGAATTCTCGGATTCCTAGGTTCCGATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAAGTTTGGATTCTAAGATAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCCAGATAGCTAGAGACC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TGGAAGTTTGGATTCTAAGATACTGGATTCCTGGATGTTTGAATTCCTGTGTTTCTAGTTTCCCGGAGATCCTAGATTCCTCAATTTTTGGATTCCTGCATTCAGGATTTTCCAGTTTCTGGATTCCTAAATTCCCAGTTTCCTGAATTCCCGGATCCCTAGACTTCTGGATTCTGTGATTCCAGAACTCCTAGATTCCTGGATTCATATGTTCCAAGGTCTCTAGCTATCTGGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TGGAAGTTTGGATTCTAAGATACTGGATTCCTGGATGTTTGAATTCCTGTGTTTCTAGKTTCCCGGAGATCCTAGATTCCTCAATTTTTGGATTCCTGCATTCAGGATTTTCCAGTTTCTGGATTCCTAAATTCCCAGTTTCCTGAATTCCCGGATCCCTAGACTTCTGGATTCTGTGATTCCAGAACTCCTAGATTCCTGGATTCATATGTTCCAAGGTCTCTAGCTATCTGGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36057</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>132957</contig_pos>
        <strand></strand>
        <context>AAATTCCCAG[T/A]TTCCTGAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGGATTCCTGCATTCAGGATTTTCCAGTTTCTGGATTCCTAAATTCCCAG</left_flank>
        <right_flank>TTCCTGAATTCCCGGATCCCTAGACTTCTGGATTCTGTGATTCCAGAACT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTCCAAGACTTTTCCCGAAATTTTTATAATGTAATTTTTGACCGTTTTTTAATGTTTAAATTGTTATACCATATTTTTTCTAATGATATATTCTGAAGCTTGTTAATCTTTTTTGTAAATTCTAAGATTTTTAGCATTGTCCACATTTTTAGAATTTTCCACCGATTTTTTACAGAAATTCTAATCTTTTTTTTCGATTTTTTTTCGAATTTTCGAATTTTCTTAAAATTGAAAGAAACTATTTTTTCAGGGTAAGTCAACTGCCAAGCTTGAAGAATCATGTCTGACGAGGAATAGTGAGTAGAAATTTTAAAATTTTGAATTTTTTGAGTTCCTAGAATCTTGAATTCCTGGATTCTTGGAAGTTTGGATTCTAAGATACTGGATTCCTGGATGTTTGAATTCCTGTGTTTCTAGTTTCCCGGAGATCCTAGATTCCTCAATTTTTGGATTCCTGCATTCAGGATTTTCCAGTTTCTGGATTCCTAAATTCCCAGTTTCCTGAATTCCCGGATCCCTAGACTTCTGGATTCTGTGATTCCAGAACTCCTAGATTCCTGGATTCATATGTTCCAAGGTCTCTAGCTATCTGGAATTTTGGATTCCTGAATTCCCAAGATATCTAGAATTTTGAATTCAGGGATTCTTGAATTTCCTAGGTTCCCGGATTTCCAGGTACTCTTATTCCTAAGTTCTCGGATCCCTAGACTCCTGAACTTTAAAATTCTTGAACTCCTGGATTCCCGGATTCCTAGACTGCTGGAATTCCTGAATACGTGGATTCCCCGATTCCTGAGTTTCTAGATTCCTGAATTCCTAGAACCTGGATTTCCAGATTCCCGGAATCCCTAAACTCCTGAATTCTCAGGCTCTTAGACTCAGGGTTTCTTGAATTCTCGGATTCCTAGGTTCCGATATTCAAAAAAATTTAAATTTCCATATTCTCGATCTCCAAATTCTCCAATTTTCAGCTCTGAGTACGAAGACGAGGAGGTAGA</canonical>
            <polymorphic>ATGTCCAAGACTTTTCCCGAAATTTTTATAATGTAATTTTTGACCGTTTTTTAATGTTTAAATTGTTATACCATATTTTTTCTAATGATATATTCTGAAGCTTGTTAATCTTTTTTGTAAATTCTAAGATTTTTAGCATTGTCCACATTTTTAGAATTTTCCACCGATTTTTTACAGAAATTCTAATCTTTTTTTTCGATTTTTTTTCGAATTTTCGAATTTTCTTAAAATTGAAAGAAACTATTTTTTCAGGGTAAGTCAACTGCCAAGCTTGAAGAATCATGTCTGACGAGGAATAGTGAGTAGAAATTTTAAAATTTTGAATTTTTTGAGTTCCTAGAATCTTGAATTCCTGGATTCTTGGAAGTTTGGATTCTAAGATACTGGATTCCTGGATGTTTGAATTCCTGTGTTTCTAGTTTCCCGGAGATCCTAGATTCCTCAATTTTTGGATTCCTGCATTCAGGATTTTCCAGTTTCTGGATTCCTAAATTCCCAGWTTCCTGAATTCCCGGATCCCTAGACTTCTGGATTCTGTGATTCCAGAACTCCTAGATTCCTGGATTCATATGTTCCAAGGTCTCTAGCTATCTGGAATTTTGGATTCCTGAATTCCCAAGATATCTAGAATTTTGAATTCAGGGATTCTTGAATTTCCTAGGTTCCCGGATTTCCAGGTACTCTTATTCCTAAGTTCTCGGATCCCTAGACTCCTGAACTTTAAAATTCTTGAACTCCTGGATTCCCGGATTCCTAGACTGCTGGAATTCCTGAATACGTGGATTCCCCGATTCCTGAGTTTCTAGATTCCTGAATTCCTAGAACCTGGATTTCCAGATTCCCGGAATCCCTAAACTCCTGAATTCTCAGGCTCTTAGACTCAGGGTTTCTTGAATTCTCGGATTCCTAGGTTCCGATATTCAAAAAAATTTAAATTTCCATATTCTCGATCTCCAAATTCTCCAATTTTCAGCTCTGAGTACGAAGACGAGGAGGTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAAGTTTGGATTCTAAGATAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCCAGATAGCTAGAGACC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TGGAAGTTTGGATTCTAAGATACTGGATTCCTGGATGTTTGAATTCCTGTGTTTCTAGTTTCCCGGAGATCCTAGATTCCTCAATTTTTGGATTCCTGCATTCAGGATTTTCCAGTTTCTGGATTCCTAAATTCCCAGTTTCCTGAATTCCCGGATCCCTAGACTTCTGGATTCTGTGATTCCAGAACTCCTAGATTCCTGGATTCATATGTTCCAAGGTCTCTAGCTATCTGGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TGGAAGTTTGGATTCTAAGATACTGGATTCCTGGATGTTTGAATTCCTGTGTTTCTAGTTTCCCGGAGATCCTAGATTCCTCAATTTTTGGATTCCTGCATTCAGGATTTTCCAGTTTCTGGATTCCTAAATTCCCAGWTTCCTGAATTCCCGGATCCCTAGACTTCTGGATTCTGTGATTCCAGAACTCCTAGATTCCTGGATTCATATGTTCCAAGGTCTCTAGCTATCTGGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36058</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>133403</contig_pos>
        <strand>+</strand>
        <context>TTTCCATATT[C/T]TCGATCTCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTCGGATTCCTAGGTTCCGATATTCAAAAAAATTTAAATTTCCATATT</left_flank>
        <right_flank>TCGATCTCCAAATTCTCCAATTTTCAGCTCTGAGTACGAAGACGAGGAGG</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGGATTCCTGCATTCAGGATTTTCCAGTTTCTGGATTCCTAAATTCCCAGTTTCCTGAATTCCCGGATCCCTAGACTTCTGGATTCTGTGATTCCAGAACTCCTAGATTCCTGGATTCATATGTTCCAAGGTCTCTAGCTATCTGGAATTTTGGATTCCTGAATTCCCAAGATATCTAGAATTTTGAATTCAGGGATTCTTGAATTTCCTAGGTTCCCGGATTTCCAGGTACTCTTATTCCTAAGTTCTCGGATCCCTAGACTCCTGAACTTTAAAATTCTTGAACTCCTGGATTCCCGGATTCCTAGACTGCTGGAATTCCTGAATACGTGGATTCCCCGATTCCTGAGTTTCTAGATTCCTGAATTCCTAGAACCTGGATTTCCAGATTCCCGGAATCCCTAAACTCCTGAATTCTCAGGCTCTTAGACTCAGGGTTTCTTGAATTCTCGGATTCCTAGGTTCCGATATTCAAAAAAATTTAAATTTCCATATTCTCGATCTCCAAATTCTCCAATTTTCAGCTCTGAGTACGAAGACGAGGAGGTAGAAGAGGAGGAGGTCGAAGAGGTCGAAGAGGCCGAAGCCGAGGAGGAGGATGCTGCCGAGGAGGCCGAGGAAGAGAGGTTCAAAAGAGCTTCTATCGACACCGGTGGTCCAGCCACGCCGGCTGCCGCTTCGCACGCTCCTGTCACTTTCGAGTACTTCTATTTTTCTTCTTTCCTATCTAGAAAAACTTTTAGTGATATGATTACAGCATCCATGGATTCTGAATTCCAGGATTCTTGGGATTATGAATTTAGATTTTGTATACCTGAGTTCCTAGATTCCTGGGTTCCCAGATTCCAACATTCCTAGATTCTTGGATTGTCACAATCCTAATATCCCGGACCACTGGACTTCTGGATTCCTAGATTCTCAGATTCCTGGATCCTTTGATTCCCGGATCCCCAGATCCTCGAAATTCTAAAATCTCGGATTTTTTTGATTCACGGAT</canonical>
            <polymorphic>TTTTGGATTCCTGCATTCAGGATTTTCCAGTTTCTGGATTCCTAAATTCCCAGTTTCCTGAATTCCCGGATCCCTAGACTTCTGGATTCTGTGATTCCAGAACTCCTAGATTCCTGGATTCATATGTTCCAAGGTCTCTAGCTATCTGGAATTTTGGATTCCTGAATTCCCAAGATATCTAGAATTTTGAATTCAGGGATTCTTGAATTTCCTAGGTTCCCGGATTTCCAGGTACTCTTATTCCTAAGTTCTCGGATCCCTAGACTCCTGAACTTTAAAATTCTTGAACTCCTGGATTCCCGGATTCCTAGACTGCTGGAATTCCTGAATACGTGGATTCCCCGATTCCTGAGTTTCTAGATTCCTGAATTCCTAGAACCTGGATTTCCAGATTCCCGGAATCCCTAAACTCCTGAATTCTCAGGCTCTTAGACTCAGGGTTTCTTGAATTCTCGGATTCCTAGGTTCCGATATTCAAAAAAATTTAAATTTCCATATTYTCGATCTCCAAATTCTCCAATTTTCAGCTCTGAGTACGAAGACGAGGAGGTAGAAGAGGAGGAGGTCGAAGAGGTCGAAGAGGCCGAAGCCGAGGAGGAGGATGCTGCCGAGGAGGCCGAGGAAGAGAGGTTCAAAAGAGCTTCTATCGACACCGGTGGTCCAGCCACGCCGGCTGCCGCTTCGCACGCTCCTGTCACTTTCGAGTACTTCTATTTTTCTTCTTTCCTATCTAGAAAAACTTTTAGTGATATGATTACAGCATCCATGGATTCTGAATTCCAGGATTCTTGGGATTATGAATTTAGATTTTGTATACCTGAGTTCCTAGATTCCTGGGTTCCCAGATTCCAACATTCCTAGATTCTTGGATTGTCACAATCCTAATATCCCGGACCACTGGACTTCTGGATTCCTAGATTCTCAGATTCCTGGATCCTTTGATTCCCGGATCCCCAGATCCTCGAAATTCTAAAATCTCGGATTTTTTTGATTCACGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>231 175 94 65 56 49 41 32 25 24 24 24 23 23 18 18 16 16 15 15 9 7</canonical_bands>
                <polymorphic_bands>287 175 94 65 49 41 32 25 24 24 24 23 23 18 18 16 16 15 15 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCCTAAACTCCTGAATTCTC</pcr_primer_p1>
		<pcr_primer_p2>CGATAGAAGCTCTTTTGAACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCCCTAAACTCCTGAATTCTCAGGCTCTTAGACTCAGGGTTTCTTGAATTCTCGGATTCCTAGGTTCCGATATTCAAAAAAATTTAAATTTCCATATTCTCGATCTCCAAATTCTCCAATTTTCAGCTCTGAGTACGAAGACGAGGAGGTAGAAGAGGAGGAGGTCGAAGAGGTCGAAGAGGCCGAAGCCGAGGAGGAGGATGCTGCCGAGGAGGCCGAGGAAGAGAGGTTCAAAAGAGCTTCTATCG</canonical_amplicon>
		<polymorphic_amplicon>ATCCCTAAACTCCTGAATTCTCAGGCTCTTAGACTCAGGGTTTCTTGAATTCTCGGATTCCTAGGTTCCGATATTCAAAAAAATTTAAATTTCCATATTYTCGATCTCCAAATTCTCCAATTTTCAGCTCTGAGTACGAAGACGAGGAGGTAGAAGAGGAGGAGGTCGAAGAGGTCGAAGAGGCCGAAGCCGAGGAGGAGGATGCTGCCGAGGAGGCCGAGGAAGAGAGGTTCAAAAGAGCTTCTATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36059</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>133671</contig_pos>
        <strand>+</strand>
        <context>CAGCATCCAT[A/G]GATTCTGARR</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTCTTTCCTATCTAGAAAAACTTTTAGTGATATGATTACAGCATCCAT</left_flank>
        <right_flank>GATTCTGAATTCCAGGATTCTTGGGATTATGAATTTAGATTTTGTATACC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAACTTTAAAATTCTTGAACTCCTGGATTCCCGGATTCCTAGACTGCTGGAATTCCTGAATACGTGGATTCCCCGATTCCTGAGTTTCTAGATTCCTGAATTCCTAGAACCTGGATTTCCAGATTCCCGGAATCCCTAAACTCCTGAATTCTCAGGCTCTTAGACTCAGGGTTTCTTGAATTCTCGGATTCCTAGGTTCCGATATTCAAAAAAATTTAAATTTCCATATTCTCGATCTCCAAATTCTCCAATTTTCAGCTCTGAGTACGAAGACGAGGAGGTAGAAGAGGAGGAGGTCGAAGAGGTCGAAGAGGCCGAAGCCGAGGAGGAGGATGCTGCCGAGGAGGCCGAGGAAGAGAGGTTCAAAAGAGCTTCTATCGACACCGGTGGTCCAGCCACGCCGGCTGCCGCTTCGCACGCTCCTGTCACTTTCGAGTACTTCTATTTTTCTTCTTTCCTATCTAGAAAAACTTTTAGTGATATGATTACAGCATCCATGGATTCTGAATTCCAGGATTCTTGGGATTATGAATTTAGATTTTGTATACCTGAGTTCCTAGATTCCTGGGTTCCCAGATTCCAACATTCCTAGATTCTTGGATTGTCACAATCCTAATATCCCGGACCACTGGACTTCTGGATTCCTAGATTCTCAGATTCCTGGATCCTTTGATTCCCGGATCCCCAGATCCTCGAAATTCTAAAATCTCGGATTTTTTTGATTCACGGATTTTCGGATTCCTGAATTTTCAAACTTCAAGTTTTTGAGATCCCGAAATTCTCATATTCCAAAACTTTTACATCTCTGTATTTCTGAAAATTTTGAAAATTATTAAATTTAAAAATTTTTATGAAACATAGAGACCTCCATGAAGAGATAACTATTAACAAATATTTGCACAATTCGCACTTTTTTTCGGCTTTCATGCACTTCAAACACAAAAATATCACCTCCCCGATCTCCGATTAACCTTAAAATTATTTTCTTGCAGCGGTGAG</canonical>
            <polymorphic>TGAACTTTAAAATTCTTGAACTCCTGGATTCCCGGATTCCTAGACTGCTGGAATTCCTGAATACGTGGATTCCCCGATTCCTGAGTTTCTAGATTCCTGAATTCCTAGAACCTGGATTTCCAGATTCCCGGAATCCCTAAACTCCTGAATTCTCAGGCTCTTAGACTCAGGGTTTCTTGAATTCTCGGATTCCTAGGTTCCGATATTCAAAAAAATTTAAATTTCCATATTCTCGATCTCCAAATTCTCCAATTTTCAGCTCTGAGTACGAAGACGAGGAGGTAGAAGAGGAGGAGGTCGAAGAGGTCGAAGAGGCCGAAGCCGAGGAGGAGGATGCTGCCGAGGAGGCCGAGGAAGAGAGGTTCAAAAGAGCTTCTATCGACACCGGTGGTCCAGCCACGCCGGCTGCCGCTTCGCACGCTCCTGTCACTTTCGAGTACTTCTATTTTTCTTCTTTCCTATCTAGAAAAACTTTTAGTGATATGATTACAGCATCCATRGATTCTGAATTCCAGGATTCTTGGGATTATGAATTTAGATTTTGTATACCTGAGTTCCTAGATTCCTGGGTTCCCAGATTCCAACATTCCTAGATTCTTGGATTGTCACAATCCTAATATCCCGGACCACTGGACTTCTGGATTCCTAGATTCTCAGATTCCTGGATCCTTTGATTCCCGGATCCCCAGATCCTCGAAATTCTAAAATCTCGGATTTTTTTGATTCACGGATTTTCGGATTCCTGAATTTTCAAACTTCAAGTTTTTGAGATCCCGAAATTCTCATATTCCAAAACTTTTACATCTCTGTATTTCTGAAAATTTTGAAAATTATTAAATTTAAAAATTTTTATGAAACATAGAGACCTCCATGAAGAGATAACTATTAACAAATATTTGCACAATTCGCACTTTTTTTCGGCTTTCATGCACTTCAAACACAAAAATATCACCTCCCCGATCTCCGATTAACCTTAAAATTATTTTCTTGCAGCGGTGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>435 192 147 130 69 18 9</canonical_bands>
                <polymorphic_bands>435 216 192 130 18 9</polymorphic_bands>
            </assay>
            <assay>
                <site>CCATGG</site>
                <isoschizomers>
                    <enzyme>Bsp19I</enzyme>
                    <enzyme>NcoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>504 304 192</canonical_bands>
                <polymorphic_bands>808 192</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>497 373 74 56</canonical_bands>
                <polymorphic_bands>870 74 56</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGAGTACTTCTATTTTTCTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAATCCGTGAATCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>304</pcr_amplicon_size>
		<canonical_amplicon>TCGAGTACTTCTATTTTTCTTCTTTCCTATCTAGAAAAACTTTTAGTGATATGATTACAGCATCCATGGATTCTGAATTCCAGGATTCTTGGGATTATGAATTTAGATTTTGTATACCTGAGTTCCTAGATTCCTGGGTTCCCAGATTCCAACATTCCTAGATTCTTGGATTGTCACAATCCTAATATCCCGGACCACTGGACTTCTGGATTCCTAGATTCTCAGATTCCTGGATCCTTTGATTCCCGGATCCCCAGATCCTCGAAATTCTAAAATCTCGGATTTTTTTGATTCACGGATTTTC</canonical_amplicon>
		<polymorphic_amplicon>TCGAGTACTTCTATTTTTCTTCTTTCCTATCTAGAAAAACTTTTAGTGATATGATTACAGCATCCATRGATTCTGAATTCCAGGATTCTTGGGATTATGAATTTAGATTTTGTATACCTGAGTTCCTAGATTCCTGGGTTCCCAGATTCCAACATTCCTAGATTCTTGGATTGTCACAATCCTAATATCCCGGACCACTGGACTTCTGGATTCCTAGATTCTCAGATTCCTGGATCCTTTGATTCCCGGATCCCCAGATCCTCGAAATTCTAAAATCTCGGATTTTTTTGATTCACGGATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36060</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>133680</contig_pos>
        <strand></strand>
        <context>TRGATTCTGA[A/G]RTCCAGGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTATCTAGAAAAACTTTTAGTGATATGATTACAGCATCCATGGATTCTGA</left_flank>
        <right_flank>TTCCAGGATTCTTGGGATTATGAATTTAGATTTTGTATACCTGAGTTCCT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTCTTGAACTCCTGGATTCCCGGATTCCTAGACTGCTGGAATTCCTGAATACGTGGATTCCCCGATTCCTGAGTTTCTAGATTCCTGAATTCCTAGAACCTGGATTTCCAGATTCCCGGAATCCCTAAACTCCTGAATTCTCAGGCTCTTAGACTCAGGGTTTCTTGAATTCTCGGATTCCTAGGTTCCGATATTCAAAAAAATTTAAATTTCCATATTCTCGATCTCCAAATTCTCCAATTTTCAGCTCTGAGTACGAAGACGAGGAGGTAGAAGAGGAGGAGGTCGAAGAGGTCGAAGAGGCCGAAGCCGAGGAGGAGGATGCTGCCGAGGAGGCCGAGGAAGAGAGGTTCAAAAGAGCTTCTATCGACACCGGTGGTCCAGCCACGCCGGCTGCCGCTTCGCACGCTCCTGTCACTTTCGAGTACTTCTATTTTTCTTCTTTCCTATCTAGAAAAACTTTTAGTGATATGATTACAGCATCCATGGATTCTGAATTCCAGGATTCTTGGGATTATGAATTTAGATTTTGTATACCTGAGTTCCTAGATTCCTGGGTTCCCAGATTCCAACATTCCTAGATTCTTGGATTGTCACAATCCTAATATCCCGGACCACTGGACTTCTGGATTCCTAGATTCTCAGATTCCTGGATCCTTTGATTCCCGGATCCCCAGATCCTCGAAATTCTAAAATCTCGGATTTTTTTGATTCACGGATTTTCGGATTCCTGAATTTTCAAACTTCAAGTTTTTGAGATCCCGAAATTCTCATATTCCAAAACTTTTACATCTCTGTATTTCTGAAAATTTTGAAAATTATTAAATTTAAAAATTTTTATGAAACATAGAGACCTCCATGAAGAGATAACTATTAACAAATATTTGCACAATTCGCACTTTTTTTCGGCTTTCATGCACTTCAAACACAAAAATATCACCTCCCCGATCTCCGATTAACCTTAAAATTATTTTCTTGCAGCGGTGAGAATCTGAAT</canonical>
            <polymorphic>AAATTCTTGAACTCCTGGATTCCCGGATTCCTAGACTGCTGGAATTCCTGAATACGTGGATTCCCCGATTCCTGAGTTTCTAGATTCCTGAATTCCTAGAACCTGGATTTCCAGATTCCCGGAATCCCTAAACTCCTGAATTCTCAGGCTCTTAGACTCAGGGTTTCTTGAATTCTCGGATTCCTAGGTTCCGATATTCAAAAAAATTTAAATTTCCATATTCTCGATCTCCAAATTCTCCAATTTTCAGCTCTGAGTACGAAGACGAGGAGGTAGAAGAGGAGGAGGTCGAAGAGGTCGAAGAGGCCGAAGCCGAGGAGGAGGATGCTGCCGAGGAGGCCGAGGAAGAGAGGTTCAAAAGAGCTTCTATCGACACCGGTGGTCCAGCCACGCCGGCTGCCGCTTCGCACGCTCCTGTCACTTTCGAGTACTTCTATTTTTCTTCTTTCCTATCTAGAAAAACTTTTAGTGATATGATTACAGCATCCATGGATTCTGARTTCCAGGATTCTTGGGATTATGAATTTAGATTTTGTATACCTGAGTTCCTAGATTCCTGGGTTCCCAGATTCCAACATTCCTAGATTCTTGGATTGTCACAATCCTAATATCCCGGACCACTGGACTTCTGGATTCCTAGATTCTCAGATTCCTGGATCCTTTGATTCCCGGATCCCCAGATCCTCGAAATTCTAAAATCTCGGATTTTTTTGATTCACGGATTTTCGGATTCCTGAATTTTCAAACTTCAAGTTTTTGAGATCCCGAAATTCTCATATTCCAAAACTTTTACATCTCTGTATTTCTGAAAATTTTGAAAATTATTAAATTTAAAAATTTTTATGAAACATAGAGACCTCCATGAAGAGATAACTATTAACAAATATTTGCACAATTCGCACTTTTTTTCGGCTTTCATGCACTTCAAACACAAAAATATCACCTCCCCGATCTCCGATTAACCTTAAAATTATTTTCTTGCAGCGGTGAGAATCTGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>265 166 165 48 48 48 42 41 34 32 32 24 23 17 8 6 1</canonical_bands>
                <polymorphic_bands>289 166 165 48 48 48 42 41 34 32 32 23 17 8 6 1</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>502 328 48 48 42 32</canonical_bands>
                <polymorphic_bands>830 48 48 42 32</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>257 166 75 58 48 48 48 42 41 34 32 32 32 24 23 9 8 8 8 6 1</canonical_bands>
                <polymorphic_bands>281 166 75 58 48 48 48 42 41 34 32 32 32 23 9 8 8 8 6 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTTCTTTCCTATCTAGAAAAACTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAATCCGTGAATCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>288</pcr_amplicon_size>
		<canonical_amplicon>TTCTTCTTTCCTATCTAGAAAAACTTTTAGTGATATGATTACAGCATCCATGGATTCTGAATTCCAGGATTCTTGGGATTATGAATTTAGATTTTGTATACCTGAGTTCCTAGATTCCTGGGTTCCCAGATTCCAACATTCCTAGATTCTTGGATTGTCACAATCCTAATATCCCGGACCACTGGACTTCTGGATTCCTAGATTCTCAGATTCCTGGATCCTTTGATTCCCGGATCCCCAGATCCTCGAAATTCTAAAATCTCGGATTTTTTTGATTCACGGATTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTCTTCTTTCCTATCTAGAAAAACTTTTAGTGATATGATTACAGCATCCATGGATTCTGARTTCCAGGATTCTTGGGATTATGAATTTAGATTTTGTATACCTGAGTTCCTAGATTCCTGGGTTCCCAGATTCCAACATTCCTAGATTCTTGGATTGTCACAATCCTAATATCCCGGACCACTGGACTTCTGGATTCCTAGATTCTCAGATTCCTGGATCCTTTGATTCCCGGATCCCCAGATCCTCGAAATTCTAAAATCTCGGATTTTTTTGATTCACGGATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36061</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>133681</contig_pos>
        <strand>+</strand>
        <context>RGATTCTGAR[A/G]TCCAGGATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATCTAGAAAAACTTTTAGTGATATGATTACAGCATCCATGGATTCTGAA</left_flank>
        <right_flank>TCCAGGATTCTTGGGATTATGAATTTAGATTTTGTATACCTGAGTTCCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTCTTGAACTCCTGGATTCCCGGATTCCTAGACTGCTGGAATTCCTGAATACGTGGATTCCCCGATTCCTGAGTTTCTAGATTCCTGAATTCCTAGAACCTGGATTTCCAGATTCCCGGAATCCCTAAACTCCTGAATTCTCAGGCTCTTAGACTCAGGGTTTCTTGAATTCTCGGATTCCTAGGTTCCGATATTCAAAAAAATTTAAATTTCCATATTCTCGATCTCCAAATTCTCCAATTTTCAGCTCTGAGTACGAAGACGAGGAGGTAGAAGAGGAGGAGGTCGAAGAGGTCGAAGAGGCCGAAGCCGAGGAGGAGGATGCTGCCGAGGAGGCCGAGGAAGAGAGGTTCAAAAGAGCTTCTATCGACACCGGTGGTCCAGCCACGCCGGCTGCCGCTTCGCACGCTCCTGTCACTTTCGAGTACTTCTATTTTTCTTCTTTCCTATCTAGAAAAACTTTTAGTGATATGATTACAGCATCCATGGATTCTGAATTCCAGGATTCTTGGGATTATGAATTTAGATTTTGTATACCTGAGTTCCTAGATTCCTGGGTTCCCAGATTCCAACATTCCTAGATTCTTGGATTGTCACAATCCTAATATCCCGGACCACTGGACTTCTGGATTCCTAGATTCTCAGATTCCTGGATCCTTTGATTCCCGGATCCCCAGATCCTCGAAATTCTAAAATCTCGGATTTTTTTGATTCACGGATTTTCGGATTCCTGAATTTTCAAACTTCAAGTTTTTGAGATCCCGAAATTCTCATATTCCAAAACTTTTACATCTCTGTATTTCTGAAAATTTTGAAAATTATTAAATTTAAAAATTTTTATGAAACATAGAGACCTCCATGAAGAGATAACTATTAACAAATATTTGCACAATTCGCACTTTTTTTCGGCTTTCATGCACTTCAAACACAAAAATATCACCTCCCCGATCTCCGATTAACCTTAAAATTATTTTCTTGCAGCGGTGAGAATCTGAATG</canonical>
            <polymorphic>AATTCTTGAACTCCTGGATTCCCGGATTCCTAGACTGCTGGAATTCCTGAATACGTGGATTCCCCGATTCCTGAGTTTCTAGATTCCTGAATTCCTAGAACCTGGATTTCCAGATTCCCGGAATCCCTAAACTCCTGAATTCTCAGGCTCTTAGACTCAGGGTTTCTTGAATTCTCGGATTCCTAGGTTCCGATATTCAAAAAAATTTAAATTTCCATATTCTCGATCTCCAAATTCTCCAATTTTCAGCTCTGAGTACGAAGACGAGGAGGTAGAAGAGGAGGAGGTCGAAGAGGTCGAAGAGGCCGAAGCCGAGGAGGAGGATGCTGCCGAGGAGGCCGAGGAAGAGAGGTTCAAAAGAGCTTCTATCGACACCGGTGGTCCAGCCACGCCGGCTGCCGCTTCGCACGCTCCTGTCACTTTCGAGTACTTCTATTTTTCTTCTTTCCTATCTAGAAAAACTTTTAGTGATATGATTACAGCATCCATGGATTCTGAARTCCAGGATTCTTGGGATTATGAATTTAGATTTTGTATACCTGAGTTCCTAGATTCCTGGGTTCCCAGATTCCAACATTCCTAGATTCTTGGATTGTCACAATCCTAATATCCCGGACCACTGGACTTCTGGATTCCTAGATTCTCAGATTCCTGGATCCTTTGATTCCCGGATCCCCAGATCCTCGAAATTCTAAAATCTCGGATTTTTTTGATTCACGGATTTTCGGATTCCTGAATTTTCAAACTTCAAGTTTTTGAGATCCCGAAATTCTCATATTCCAAAACTTTTACATCTCTGTATTTCTGAAAATTTTGAAAATTATTAAATTTAAAAATTTTTATGAAACATAGAGACCTCCATGAAGAGATAACTATTAACAAATATTTGCACAATTCGCACTTTTTTTCGGCTTTCATGCACTTCAAACACAAAAATATCACCTCCCCGATCTCCGATTAACCTTAAAATTATTTTCTTGCAGCGGTGAGAATCTGAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>265 166 166 48 48 48 42 41 34 32 32 24 23 17 8 6</canonical_bands>
                <polymorphic_bands>289 166 166 48 48 48 42 41 34 32 32 23 17 8 6</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>503 328 48 48 41 32</canonical_bands>
                <polymorphic_bands>831 48 48 41 32</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>257 166 75 58 48 48 48 42 41 34 33 32 32 24 23 9 8 8 8 6 0</canonical_bands>
                <polymorphic_bands>281 166 75 58 48 48 48 42 41 34 33 32 32 23 9 8 8 8 6 0</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTTCTTTCCTATCTAGAAAAACTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAATCCGTGAATCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>288</pcr_amplicon_size>
		<canonical_amplicon>TTCTTCTTTCCTATCTAGAAAAACTTTTAGTGATATGATTACAGCATCCATGGATTCTGAATTCCAGGATTCTTGGGATTATGAATTTAGATTTTGTATACCTGAGTTCCTAGATTCCTGGGTTCCCAGATTCCAACATTCCTAGATTCTTGGATTGTCACAATCCTAATATCCCGGACCACTGGACTTCTGGATTCCTAGATTCTCAGATTCCTGGATCCTTTGATTCCCGGATCCCCAGATCCTCGAAATTCTAAAATCTCGGATTTTTTTGATTCACGGATTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTCTTCTTTCCTATCTAGAAAAACTTTTAGTGATATGATTACAGCATCCATGGATTCTGAARTCCAGGATTCTTGGGATTATGAATTTAGATTTTGTATACCTGAGTTCCTAGATTCCTGGGTTCCCAGATTCCAACATTCCTAGATTCTTGGATTGTCACAATCCTAATATCCCGGACCACTGGACTTCTGGATTCCTAGATTCTCAGATTCCTGGATCCTTTGATTCCCGGATCCCCAGATCCTCGAAATTCTAAAATCTCGGATTTTTTTGATTCACGGATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36062</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>133874</contig_pos>
        <strand></strand>
        <context>ctcgaaattc[T/A]aaaATCTCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CTCAGATTCCTGGATCCTTTGATTCCCGGATCCCCAGATCCTCGAAATTC</left_flank>
        <right_flank>AAAATCTCGGATTTTTTTGATTCACGGATTTTCGGATTCCTGAATTTTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTCAAAAAAATTTAAATTTCCATATTCTCGATCTCCAAATTCTCCAATTTTCAGCTCTGAGTACGAAGACGAGGAGGTAGAAGAGGAGGAGGTCGAAGAGGTCGAAGAGGCCGAAGCCGAGGAGGAGGATGCTGCCGAGGAGGCCGAGGAAGAGAGGTTCAAAAGAGCTTCTATCGACACCGGTGGTCCAGCCACGCCGGCTGCCGCTTCGCACGCTCCTGTCACTTTCGAGTACTTCTATTTTTCTTCTTTCCTATCTAGAAAAACTTTTAGTGATATGATTACAGCATCCATGGATTCTGAATTCCAGGATTCTTGGGATTATGAATTTAGATTTTGTATACCTGAGTTCCTAGATTCCTGGGTTCCCAGATTCCAACATTCCTAGATTCTTGGATTGTCACAATCCTAATATCCCGGACCACTGGACTTCTGGATTCCTAGATTCTCAGATTCCTGGATCCTTTGATTCCCGGATCCCCAGATCCTCGAAATTCTAAAATCTCGGATTTTTTTGATTCACGGATTTTCGGATTCCTGAATTTTCAAACTTCAAGTTTTTGAGATCCCGAAATTCTCATATTCCAAAACTTTTACATCTCTGTATTTCTGAAAATTTTGAAAATTATTAAATTTAAAAATTTTTATGAAACATAGAGACCTCCATGAAGAGATAACTATTAACAAATATTTGCACAATTCGCACTTTTTTTCGGCTTTCATGCACTTCAAACACAAAAATATCACCTCCCCGATCTCCGATTAACCTTAAAATTATTTTCTTGCAGCGGTGAGAATCTGAATGAAGCCGAGAAGGCCATGTTGGCCGCCAAGAAGCGTCATGAGAACGACGAACAAGCCAAACTGGACGACTACGAGAAGGCACGTCGTTCGGAGCGTGAAAAGGAAGAAGAGGAGCTGAAGAAGTTGAAAGAGAAGCAAGAGCAACGTCGTCTTGCCAGAGAGCAAGAGGAACGGGAGGCTGCTGAAAAAAAGAG</canonical>
            <polymorphic>TATTCAAAAAAATTTAAATTTCCATATTCTCGATCTCCAAATTCTCCAATTTTCAGCTCTGAGTACGAAGACGAGGAGGTAGAAGAGGAGGAGGTCGAAGAGGTCGAAGAGGCCGAAGCCGAGGAGGAGGATGCTGCCGAGGAGGCCGAGGAAGAGAGGTTCAAAAGAGCTTCTATCGACACCGGTGGTCCAGCCACGCCGGCTGCCGCTTCGCACGCTCCTGTCACTTTCGAGTACTTCTATTTTTCTTCTTTCCTATCTAGAAAAACTTTTAGTGATATGATTACAGCATCCATGGATTCTGAATTCCAGGATTCTTGGGATTATGAATTTAGATTTTGTATACCTGAGTTCCTAGATTCCTGGGTTCCCAGATTCCAACATTCCTAGATTCTTGGATTGTCACAATCCTAATATCCCGGACCACTGGACTTCTGGATTCCTAGATTCTCAGATTCCTGGATCCTTTGATTCCCGGATCCCCAGATCCTCGAAATTCWAAAATCTCGGATTTTTTTGATTCACGGATTTTCGGATTCCTGAATTTTCAAACTTCAAGTTTTTGAGATCCCGAAATTCTCATATTCCAAAACTTTTACATCTCTGTATTTCTGAAAATTTTGAAAATTATTAAATTTAAAAATTTTTATGAAACATAGAGACCTCCATGAAGAGATAACTATTAACAAATATTTGCACAATTCGCACTTTTTTTCGGCTTTCATGCACTTCAAACACAAAAATATCACCTCCCCGATCTCCGATTAACCTTAAAATTATTTTCTTGCAGCGGTGAGAATCTGAATGAAGCCGAGAAGGCCATGTTGGCCGCCAAGAAGCGTCATGAGAACGACGAACAAGCCAAACTGGACGACTACGAGAAGGCACGTCGTTCGGAGCGTGAAAAGGAAGAAGAGGAGCTGAAGAAGTTGAAAGAGAAGCAAGAGCAACGTCGTCTTGCCAGAGAGCAAGAGGAACGGGAGGCTGCTGAAAAAAAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATTTAGATTTTGTATACCTGAGT</pcr_primer_p1>
		<pcr_primer_p2>AATATGAGAATTTCGGGATCT</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>TGAATTTAGATTTTGTATACCTGAGTTCCTAGATTCCTGGGTTCCCAGATTCCAACATTCCTAGATTCTTGGATTGTCACAATCCTAATATCCCGGACCACTGGACTTCTGGATTCCTAGATTCTCAGATTCCTGGATCCTTTGATTCCCGGATCCCCAGATCCTCGAAATTCTAAAATCTCGGATTTTTTTGATTCACGGATTTTCGGATTCCTGAATTTTCAAACTTCAAGTTTTTGAGATCCCGAAATTCTCATATT</canonical_amplicon>
		<polymorphic_amplicon>TGAATTTAGATTTTGTATACCTGAGTTCCTAGATTCCTGGGTTCCCAGATTCCAACATTCCTAGATTCTTGGATTGTCACAATCCTAATATCCCGGACCACTGGACTTCTGGATTCCTAGATTCTCAGATTCCTGGATCCTTTGATTCCCGGATCCCCAGATCCTCGAAATTCWAAAATCTCGGATTTTTTTGATTCACGGATTTTCGGATTCCTGAATTTTCAAACTTCAAGTTTTTGAGATCCCGAAATTCTCATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36063</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>133934</contig_pos>
        <strand>+</strand>
        <context>AAACTTCAAG[A/T]TTTTGAGATC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATTTTTTTGATTCACGGATTTTCGGATTCCTGAATTTTCAAACTTCAAG</left_flank>
        <right_flank>TTTTGAGATCCCGAAATTCTCATATTCCAAAACTTTTACATCTCTGTATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTACGAAGACGAGGAGGTAGAAGAGGAGGAGGTCGAAGAGGTCGAAGAGGCCGAAGCCGAGGAGGAGGATGCTGCCGAGGAGGCCGAGGAAGAGAGGTTCAAAAGAGCTTCTATCGACACCGGTGGTCCAGCCACGCCGGCTGCCGCTTCGCACGCTCCTGTCACTTTCGAGTACTTCTATTTTTCTTCTTTCCTATCTAGAAAAACTTTTAGTGATATGATTACAGCATCCATGGATTCTGAATTCCAGGATTCTTGGGATTATGAATTTAGATTTTGTATACCTGAGTTCCTAGATTCCTGGGTTCCCAGATTCCAACATTCCTAGATTCTTGGATTGTCACAATCCTAATATCCCGGACCACTGGACTTCTGGATTCCTAGATTCTCAGATTCCTGGATCCTTTGATTCCCGGATCCCCAGATCCTCGAAATTCTAAAATCTCGGATTTTTTTGATTCACGGATTTTCGGATTCCTGAATTTTCAAACTTCAAGTTTTTGAGATCCCGAAATTCTCATATTCCAAAACTTTTACATCTCTGTATTTCTGAAAATTTTGAAAATTATTAAATTTAAAAATTTTTATGAAACATAGAGACCTCCATGAAGAGATAACTATTAACAAATATTTGCACAATTCGCACTTTTTTTCGGCTTTCATGCACTTCAAACACAAAAATATCACCTCCCCGATCTCCGATTAACCTTAAAATTATTTTCTTGCAGCGGTGAGAATCTGAATGAAGCCGAGAAGGCCATGTTGGCCGCCAAGAAGCGTCATGAGAACGACGAACAAGCCAAACTGGACGACTACGAGAAGGCACGTCGTTCGGAGCGTGAAAAGGAAGAAGAGGAGCTGAAGAAGTTGAAAGAGAAGCAAGAGCAACGTCGTCTTGCCAGAGAGCAAGAGGAACGGGAGGCTGCTGAAAAAAAGAGATTGGATGAGGAGAAGCGTAAGAAGGAGGAAGAGGATCGTCGTGCTCGTGCCGAGGAGGA</canonical>
            <polymorphic>GAGTACGAAGACGAGGAGGTAGAAGAGGAGGAGGTCGAAGAGGTCGAAGAGGCCGAAGCCGAGGAGGAGGATGCTGCCGAGGAGGCCGAGGAAGAGAGGTTCAAAAGAGCTTCTATCGACACCGGTGGTCCAGCCACGCCGGCTGCCGCTTCGCACGCTCCTGTCACTTTCGAGTACTTCTATTTTTCTTCTTTCCTATCTAGAAAAACTTTTAGTGATATGATTACAGCATCCATGGATTCTGAATTCCAGGATTCTTGGGATTATGAATTTAGATTTTGTATACCTGAGTTCCTAGATTCCTGGGTTCCCAGATTCCAACATTCCTAGATTCTTGGATTGTCACAATCCTAATATCCCGGACCACTGGACTTCTGGATTCCTAGATTCTCAGATTCCTGGATCCTTTGATTCCCGGATCCCCAGATCCTCGAAATTCTAAAATCTCGGATTTTTTTGATTCACGGATTTTCGGATTCCTGAATTTTCAAACTTCAAGWTTTTGAGATCCCGAAATTCTCATATTCCAAAACTTTTACATCTCTGTATTTCTGAAAATTTTGAAAATTATTAAATTTAAAAATTTTTATGAAACATAGAGACCTCCATGAAGAGATAACTATTAACAAATATTTGCACAATTCGCACTTTTTTTCGGCTTTCATGCACTTCAAACACAAAAATATCACCTCCCCGATCTCCGATTAACCTTAAAATTATTTTCTTGCAGCGGTGAGAATCTGAATGAAGCCGAGAAGGCCATGTTGGCCGCCAAGAAGCGTCATGAGAACGACGAACAAGCCAAACTGGACGACTACGAGAAGGCACGTCGTTCGGAGCGTGAAAAGGAAGAAGAGGAGCTGAAGAAGTTGAAAGAGAAGCAAGAGCAACGTCGTCTTGCCAGAGAGCAAGAGGAACGGGAGGCTGCTGAAAAAAAGAGATTGGATGAGGAGAAGCGTAAGAAGGAGGAAGAGGATCGTCGTGCTCGTGCCGAGGAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATTTAGATTTTGTATACCTGAGT</pcr_primer_p1>
		<pcr_primer_p2>TTCATGGAGGTCTCTATGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>346</pcr_amplicon_size>
		<canonical_amplicon>TGAATTTAGATTTTGTATACCTGAGTTCCTAGATTCCTGGGTTCCCAGATTCCAACATTCCTAGATTCTTGGATTGTCACAATCCTAATATCCCGGACCACTGGACTTCTGGATTCCTAGATTCTCAGATTCCTGGATCCTTTGATTCCCGGATCCCCAGATCCTCGAAATTCTAAAATCTCGGATTTTTTTGATTCACGGATTTTCGGATTCCTGAATTTTCAAACTTCAAGTTTTTGAGATCCCGAAATTCTCATATTCCAAAACTTTTACATCTCTGTATTTCTGAAAATTTTGAAAATTATTAAATTTAAAAATTTTTATGAAACATAGAGACCTCCATGAA</canonical_amplicon>
		<polymorphic_amplicon>TGAATTTAGATTTTGTATACCTGAGTTCCTAGATTCCTGGGTTCCCAGATTCCAACATTCCTAGATTCTTGGATTGTCACAATCCTAATATCCCGGACCACTGGACTTCTGGATTCCTAGATTCTCAGATTCCTGGATCCTTTGATTCCCGGATCCCCAGATCCTCGAAATTCTAAAATCTCGGATTTTTTTGATTCACGGATTTTCGGATTCCTGAATTTTCAAACTTCAAGWTTTTGAGATCCCGAAATTCTCATATTCCAAAACTTTTACATCTCTGTATTTCTGAAAATTTTGAAAATTATTAAATTTAAAAATTTTTATGAAACATAGAGACCTCCATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36064</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>136889</contig_pos>
        <strand></strand>
        <context>TACCTTGCCC[T/A]WGACTTGACC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATTCATGGAACTTGGACTACCCATGGGCAGGTCTTGTCCATACCTTGCCC</left_flank>
        <right_flank>AGACTTGACCATGCTTGCCCATGACTTTTGTAATATTTGTCCAAGACTTC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTGCCTCTTCCTTGACCTTTTTGTGTCTGAAATCAATTTTCTACAGTAATCCAAACAACACTTCAAAAACGCACTCAAGAACAATGCTGGCAAACTTTTCTCTGAGGTCCACCGCCGCTTTCTGCATGTGCTCCTTTCTGACACAAATTCTGCAAGTCATCGGAACTCCTTTGCACACTCCTTGGGTATGGACGAAGTAGGCGGGCTGAAAAATTGCAATTTCGCCCAAGATTTGTCCTAGTCTTGCCCAAGTCTTGCCCAACTTTTATCGAAGGTTTGGCCAAGCCTTGTTTAAGCCTCGACCAAGTCTTCATTAAGTCTTGGGTATGACTTGTTCGAGACTTTCCCAAATCTTGCCCAAGTCTTGCCCAAGGCTTGTCCATCACTTGGTCTGGAATTAATTTGGGCAAGATATGGTCAGCCGTCTGCCAGTCCGCTGAAAGTATAATTCATGGAACTTGGACTACCCATGGGCAGGTCTTGTCCATACCTTGCCCTAGACTTGACCATGCTTGCCCATGACTTTTGTAATATTTGTCCAAGACTTCCATGTCCAAGACAACCAAAACATAACAGGTTGTCTTGTTACTGTCCAACTCTACCCGAACTCTTCTTCACTTGCCTAACACCTGCCCAACACTTGCCCAACCCTAGCCCAACCCTTGCCCAACCCTAGCCCAACCCTTGCCCAACCCACCTTTTCTAAATACTTAGACAACAGAGCATTCAACTGAACAATCTCCATCGATTGATAAGCGCATGCCTCGGTCTCAAAAACCAATTCCAATTTCGGTAGATTATAGTCAGAGAGATCAGGCATTGCTTTTTCTAGTCCCTGGTATTTGATAATCTCCTCACATGTGCATGGTTCAAAAACTGGCTTATCTTGAAGTCCCTTGATTTTTTGTAATTCCGGTCCAAAAACGTTGAGCAGATAGGAAGGAAGCGTCTGTCGGAGATGATCAACTTTTAGAGTGTCAATGAAGAATGGGACCGAC</canonical>
            <polymorphic>CTCTGCCTCTTCCTTGACCTTTTTGTGTCTGAAATCAATTTTCTACAGTAATCCAAACAACACTTCAAAAACGCACTCAAGAACAATGCTGGCAAACTTTTCTCTGAGGTCCACCGCCGCTTTCTGCATGTGCTCCTTTCTGACACAAATTCTGCAAGTCATCGGAACTCCTTTGCACACTCCTTGGGTATGGACGAAGTAGGCGGGCTGAAAAATTGCAATTTCGCCCAAGATTTGTCCTAGTCTTGCCCAAGTCTTGCCCAACTTTTATCGAAGGTTTGGCCAAGCCTTGTTTAAGCCTCGACCAAGTCTTCATTAAGTCTTGGGTATGACTTGTTCGAGACTTTCCCAAATCTTGCCCAAGTCTTGCCCAAGGCTTGTCCATCACTTGGTCTGGAATTAATTTGGGCAAGATATGGTCAGCCGTCTGCCAGTCCGCTGAAAGTATAATTCATGGAACTTGGACTACCCATGGGCAGGTCTTGTCCATACCTTGCCCWAGACTTGACCATGCTTGCCCATGACTTTTGTAATATTTGTCCAAGACTTCCATGTCCAAGACAACCAAAACATAACAGGTTGTCTTGTTACTGTCCAACTCTACCCGAACTCTTCTTCACTTGCCTAACACCTGCCCAACACTTGCCCAACCCTAGCCCAACCCTTGCCCAACCCTAGCCCAACCCTTGCCCAACCCACCTTTTCTAAATACTTAGACAACAGAGCATTCAACTGAACAATCTCCATCGATTGATAAGCGCATGCCTCGGTCTCAAAAACCAATTCCAATTTCGGTAGATTATAGTCAGAGAGATCAGGCATTGCTTTTTCTAGTCCCTGGTATTTGATAATCTCCTCACATGTGCATGGTTCAAAAACTGGCTTATCTTGAAGTCCCTTGATTTTTTGTAATTCCGGTCCAAAAACGTTGAGCAGATAGGAAGGAAGCGTCTGTCGGAGATGATCAACTTTTAGAGTGTCAATGAAGAATGGGACCGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>259 240 169 156 154 22</canonical_bands>
                <polymorphic_bands>413 240 169 156 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTCATTAAGTCTTGGGTATGA</pcr_primer_p1>
		<pcr_primer_p2>ACATGGAAGTCTTGGACAAATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCTTCATTAAGTCTTGGGTATGACTTGTTCGAGACTTTCCCAAATCTTGCCCAAGTCTTGCCCAAGGCTTGTCCATCACTTGGTCTGGAATTAATTTGGGCAAGATATGGTCAGCCGTCTGCCAGTCCGCTGAAAGTATAATTCATGGAACTTGGACTACCCATGGGCAGGTCTTGTCCATACCTTGCCCTAGACTTGACCATGCTTGCCCATGACTTTTGTAATATTTGTCCAAGACTTCCATGT</canonical_amplicon>
		<polymorphic_amplicon>TCTTCATTAAGTCTTGGGTATGACTTGTTCGAGACTTTCCCAAATCTTGCCCAAGTCTTGCCCAAGGCTTGTCCATCACTTGGTCTGGAATTAATTTGGGCAAGATATGGTCAGCCGTCTGCCAGTCCGCTGAAAGTATAATTCATGGAACTTGGACTACCCATGGGCAGGTCTTGTCCATACCTTGCCCWAGACTTGACCATGCTTGCCCATGACTTTTGTAATATTTGTCCAAGACTTCCATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36065</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>136890</contig_pos>
        <strand></strand>
        <context>ACCTTGCCCW[A/T]GACTTGACCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCATGGAACTTGGACTACCCATGGGCAGGTCTTGTCCATACCTTGCCCT</left_flank>
        <right_flank>GACTTGACCATGCTTGCCCATGACTTTTGTAATATTTGTCCAAGACTTCC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGCCTCTTCCTTGACCTTTTTGTGTCTGAAATCAATTTTCTACAGTAATCCAAACAACACTTCAAAAACGCACTCAAGAACAATGCTGGCAAACTTTTCTCTGAGGTCCACCGCCGCTTTCTGCATGTGCTCCTTTCTGACACAAATTCTGCAAGTCATCGGAACTCCTTTGCACACTCCTTGGGTATGGACGAAGTAGGCGGGCTGAAAAATTGCAATTTCGCCCAAGATTTGTCCTAGTCTTGCCCAAGTCTTGCCCAACTTTTATCGAAGGTTTGGCCAAGCCTTGTTTAAGCCTCGACCAAGTCTTCATTAAGTCTTGGGTATGACTTGTTCGAGACTTTCCCAAATCTTGCCCAAGTCTTGCCCAAGGCTTGTCCATCACTTGGTCTGGAATTAATTTGGGCAAGATATGGTCAGCCGTCTGCCAGTCCGCTGAAAGTATAATTCATGGAACTTGGACTACCCATGGGCAGGTCTTGTCCATACCTTGCCCTAGACTTGACCATGCTTGCCCATGACTTTTGTAATATTTGTCCAAGACTTCCATGTCCAAGACAACCAAAACATAACAGGTTGTCTTGTTACTGTCCAACTCTACCCGAACTCTTCTTCACTTGCCTAACACCTGCCCAACACTTGCCCAACCCTAGCCCAACCCTTGCCCAACCCTAGCCCAACCCTTGCCCAACCCACCTTTTCTAAATACTTAGACAACAGAGCATTCAACTGAACAATCTCCATCGATTGATAAGCGCATGCCTCGGTCTCAAAAACCAATTCCAATTTCGGTAGATTATAGTCAGAGAGATCAGGCATTGCTTTTTCTAGTCCCTGGTATTTGATAATCTCCTCACATGTGCATGGTTCAAAAACTGGCTTATCTTGAAGTCCCTTGATTTTTTGTAATTCCGGTCCAAAAACGTTGAGCAGATAGGAAGGAAGCGTCTGTCGGAGATGATCAACTTTTAGAGTGTCAATGAAGAATGGGACCGACT</canonical>
            <polymorphic>TCTGCCTCTTCCTTGACCTTTTTGTGTCTGAAATCAATTTTCTACAGTAATCCAAACAACACTTCAAAAACGCACTCAAGAACAATGCTGGCAAACTTTTCTCTGAGGTCCACCGCCGCTTTCTGCATGTGCTCCTTTCTGACACAAATTCTGCAAGTCATCGGAACTCCTTTGCACACTCCTTGGGTATGGACGAAGTAGGCGGGCTGAAAAATTGCAATTTCGCCCAAGATTTGTCCTAGTCTTGCCCAAGTCTTGCCCAACTTTTATCGAAGGTTTGGCCAAGCCTTGTTTAAGCCTCGACCAAGTCTTCATTAAGTCTTGGGTATGACTTGTTCGAGACTTTCCCAAATCTTGCCCAAGTCTTGCCCAAGGCTTGTCCATCACTTGGTCTGGAATTAATTTGGGCAAGATATGGTCAGCCGTCTGCCAGTCCGCTGAAAGTATAATTCATGGAACTTGGACTACCCATGGGCAGGTCTTGTCCATACCTTGCCCTWGACTTGACCATGCTTGCCCATGACTTTTGTAATATTTGTCCAAGACTTCCATGTCCAAGACAACCAAAACATAACAGGTTGTCTTGTTACTGTCCAACTCTACCCGAACTCTTCTTCACTTGCCTAACACCTGCCCAACACTTGCCCAACCCTAGCCCAACCCTTGCCCAACCCTAGCCCAACCCTTGCCCAACCCACCTTTTCTAAATACTTAGACAACAGAGCATTCAACTGAACAATCTCCATCGATTGATAAGCGCATGCCTCGGTCTCAAAAACCAATTCCAATTTCGGTAGATTATAGTCAGAGAGATCAGGCATTGCTTTTTCTAGTCCCTGGTATTTGATAATCTCCTCACATGTGCATGGTTCAAAAACTGGCTTATCTTGAAGTCCCTTGATTTTTTGTAATTCCGGTCCAAAAACGTTGAGCAGATAGGAAGGAAGCGTCTGTCGGAGATGATCAACTTTTAGAGTGTCAATGAAGAATGGGACCGACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>259 239 170 156 154 22</canonical_bands>
                <polymorphic_bands>413 239 170 156 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTCATTAAGTCTTGGGTATGA</pcr_primer_p1>
		<pcr_primer_p2>ACATGGAAGTCTTGGACAAATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCTTCATTAAGTCTTGGGTATGACTTGTTCGAGACTTTCCCAAATCTTGCCCAAGTCTTGCCCAAGGCTTGTCCATCACTTGGTCTGGAATTAATTTGGGCAAGATATGGTCAGCCGTCTGCCAGTCCGCTGAAAGTATAATTCATGGAACTTGGACTACCCATGGGCAGGTCTTGTCCATACCTTGCCCTAGACTTGACCATGCTTGCCCATGACTTTTGTAATATTTGTCCAAGACTTCCATGT</canonical_amplicon>
		<polymorphic_amplicon>TCTTCATTAAGTCTTGGGTATGACTTGTTCGAGACTTTCCCAAATCTTGCCCAAGTCTTGCCCAAGGCTTGTCCATCACTTGGTCTGGAATTAATTTGGGCAAGATATGGTCAGCCGTCTGCCAGTCCGCTGAAAGTATAATTCATGGAACTTGGACTACCCATGGGCAGGTCTTGTCCATACCTTGCCCTWGACTTGACCATGCTTGCCCATGACTTTTGTAATATTTGTCCAAGACTTCCATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36066</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>138275</contig_pos>
        <strand></strand>
        <context>AACAATCATA[T/C]TGTTCAATTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTGCATCAAAATGCGTCTTCTCAGAATCCGGAAGGAACCAACAATCATA</left_flank>
        <right_flank>TGTTCAATTATTTCTGCATGCTTTTTGATCACAATTTCCAGCCAATGCAA</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGCTCGGGGGATCGAGCAGATGACGAACTGGAAAAATTGAAATTAGGAATTTTATAATTGTAAGATGTCTAGATTCTGAGATTCTGAGAATCTGAATTTGGAGATTCTTATAATTCAAGTGAAGTTCTGAGTTTCCAAAATTCCGGTATTCAAAACGGGATATTCTGAGAATACGAAACTCAGAAATTAAGAAATTAAGAAATTATTAGATTCTGAGATTCTTAGATCCTTATATTCTTATATGTATTCTTAGATTCTTATCTTACCTTAAACAAGTCCTGACCCCCATACTTCTTGATCATTTCCTCATATCTGATGGTTTTATGTGTCGACGAGCTCTCAATCCCTTTCTTCAATCCGTCATGAGCCGATTGATTGTCATGTCTGAGCAATGTCTCGTAAGCCATCACAAAATCCCGTTCCTCATTTTCAAAAACCCGCACAAGTTTTGCATCAAAATGCGTCTTCTCAGAATCCGGAAGGAACCAACAATCATATTGTTCAATTATTTCTGCATGCTTTTTGATCACAATTTCCAGCCAATGCAATAGATTTCCATATGTTTCTTCGTTTCCTTTCAACGGAAATTTGTCATCAAACTTGTGGACCAGTACTGCAATATCCGAATATTCTGGATCCCGAGGGCACGGAGGCAGAATCCCTTTTACAGTTTCGAAGACGTCTGGAATGGTTGTCGGTGCCTCTTTCACCCTTTCAATCCCTTTTTCCATTTCTTCCTTCACAAATTTATGAAATTTCGCTTGAATTTCTTCCCACTCCACATGATCAAATTCTGTCAATTCGCAATTTCCATTATATTTCATTTCGTGGGTTTTGAGAAAATATGCTACACACGAGCTGATAAAATCGTTTTCAGGCACTCCGAAGAAATCATAGTAACCCAAATGTTGCATGTAGACGTAGATGTCGTTTTTGTACATGTAGGTGTAGTTTTCGTCGTCTTTGTATTGAATTGGGGAGGTCTGGAAAAAAGCAAA</canonical>
            <polymorphic>TCTGCTCGGGGGATCGAGCAGATGACGAACTGGAAAAATTGAAATTAGGAATTTTATAATTGTAAGATGTCTAGATTCTGAGATTCTGAGAATCTGAATTTGGAGATTCTTATAATTCAAGTGAAGTTCTGAGTTTCCAAAATTCCGGTATTCAAAACGGGATATTCTGAGAATACGAAACTCAGAAATTAAGAAATTAAGAAATTATTAGATTCTGAGATTCTTAGATCCTTATATTCTTATATGTATTCTTAGATTCTTATCTTACCTTAAACAAGTCCTGACCCCCATACTTCTTGATCATTTCCTCATATCTGATGGTTTTATGTGTCGACGAGCTCTCAATCCCTTTCTTCAATCCGTCATGAGCCGATTGATTGTCATGTCTGAGCAATGTCTCGTAAGCCATCACAAAATCCCGTTCCTCATTTTCAAAAACCCGCACAAGTTTTGCATCAAAATGCGTCTTCTCAGAATCCGGAAGGAACCAACAATCATAYTGTTCAATTATTTCTGCATGCTTTTTGATCACAATTTCCAGCCAATGCAATAGATTTCCATATGTTTCTTCGTTTCCTTTCAACGGAAATTTGTCATCAAACTTGTGGACCAGTACTGCAATATCCGAATATTCTGGATCCCGAGGGCACGGAGGCAGAATCCCTTTTACAGTTTCGAAGACGTCTGGAATGGTTGTCGGTGCCTCTTTCACCCTTTCAATCCCTTTTTCCATTTCTTCCTTCACAAATTTATGAAATTTCGCTTGAATTTCTTCCCACTCCACATGATCAAATTCTGTCAATTCGCAATTTCCATTATATTTCATTTCGTGGGTTTTGAGAAAATATGCTACACACGAGCTGATAAAATCGTTTTCAGGCACTCCGAAGAAATCATAGTAACCCAAATGTTGCATGTAGACGTAGATGTCGTTTTTGTACATGTAGGTGTAGTTTTCGTCGTCTTTGTATTGAATTGGGGAGGTCTGGAAAAAAGCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCAATCCCTTTCTTCAATC</pcr_primer_p1>
		<pcr_primer_p2>ACGAAGAAACATATGGAAATCTA</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>TCTCAATCCCTTTCTTCAATCCGTCATGAGCCGATTGATTGTCATGTCTGAGCAATGTCTCGTAAGCCATCACAAAATCCCGTTCCTCATTTTCAAAAACCCGCACAAGTTTTGCATCAAAATGCGTCTTCTCAGAATCCGGAAGGAACCAACAATCATATTGTTCAATTATTTCTGCATGCTTTTTGATCACAATTTCCAGCCAATGCAATAGATTTCCATATGTTTCTTCGT</canonical_amplicon>
		<polymorphic_amplicon>TCTCAATCCCTTTCTTCAATCCGTCATGAGCCGATTGATTGTCATGTCTGAGCAATGTCTCGTAAGCCATCACAAAATCCCGTTCCTCATTTTCAAAAACCCGCACAAGTTTTGCATCAAAATGCGTCTTCTCAGAATCCGGAAGGAACCAACAATCATAYTGTTCAATTATTTCTGCATGCTTTTTGATCACAATTTCCAGCCAATGCAATAGATTTCCATATGTTTCTTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36067</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>138796</contig_pos>
        <strand></strand>
        <context>cagaaatcca[G/A]aagttcagga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTGAATTGGGGAGGTCTGGAAAAAAGCAAATTGGGAAATTCAGAAATCCA</left_flank>
        <right_flank>AAGTTCAGGAATCGAAAAATTCATAAATTCGAAAACTCTGGAATTCTAGA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTGATCACAATTTCCAGCCAATGCAATAGATTTCCATATGTTTCTTCGTTTCCTTTCAACGGAAATTTGTCATCAAACTTGTGGACCAGTACTGCAATATCCGAATATTCTGGATCCCGAGGGCACGGAGGCAGAATCCCTTTTACAGTTTCGAAGACGTCTGGAATGGTTGTCGGTGCCTCTTTCACCCTTTCAATCCCTTTTTCCATTTCTTCCTTCACAAATTTATGAAATTTCGCTTGAATTTCTTCCCACTCCACATGATCAAATTCTGTCAATTCGCAATTTCCATTATATTTCATTTCGTGGGTTTTGAGAAAATATGCTACACACGAGCTGATAAAATCGTTTTCAGGCACTCCGAAGAAATCATAGTAACCCAAATGTTGCATGTAGACGTAGATGTCGTTTTTGTACATGTAGGTGTAGTTTTCGTCGTCTTTGTATTGAATTGGGGAGGTCTGGAAAAAAGCAAATTGGGAAATTCAGAAATCCAGAAGTTCAGGAATCGAAAAATTCATAAATTCGAAAACTCTGGAATTCTAGAAAATTTGAAAAGTGGATAATTTCCGGAATTCCAAGTTTCCGAATTTGATTCGAAAATCATGAAATTCTGAACTTCCAAAATTTCAGAATTCCCAGGAGAATCTGAAAATCGAAGAAATTCAGAAATTTGGCTACTTCTGAAAATTTGGAAATTCAGAAGATCAGAAGTTCAGAAATTCAAAACTTCTGATATTCGAAAATTCTGAAATTCTAGGAAATTTGAAAGCGTGTAATTTCAGGAATTCCAAGTTTTCAGAAATTCAACATTTTTAAAAATCCTGAAAATAAAGGATATTAAGAAATTTGACAAATTCAAGAAAATATAGAAATTCTGAAATTCCAGAAATTCCAACTTTTCAGGATTTCCGAATTTCAACTGAAAATTCTAAAATCTCGCAAAAAAATCAGAAAATTGAATTTCCAATTAATTTTTTCGATTTTTCGGAGTTTT</canonical>
            <polymorphic>TTTTTGATCACAATTTCCAGCCAATGCAATAGATTTCCATATGTTTCTTCGTTTCCTTTCAACGGAAATTTGTCATCAAACTTGTGGACCAGTACTGCAATATCCGAATATTCTGGATCCCGAGGGCACGGAGGCAGAATCCCTTTTACAGTTTCGAAGACGTCTGGAATGGTTGTCGGTGCCTCTTTCACCCTTTCAATCCCTTTTTCCATTTCTTCCTTCACAAATTTATGAAATTTCGCTTGAATTTCTTCCCACTCCACATGATCAAATTCTGTCAATTCGCAATTTCCATTATATTTCATTTCGTGGGTTTTGAGAAAATATGCTACACACGAGCTGATAAAATCGTTTTCAGGCACTCCGAAGAAATCATAGTAACCCAAATGTTGCATGTAGACGTAGATGTCGTTTTTGTACATGTAGGTGTAGTTTTCGTCGTCTTTGTATTGAATTGGGGAGGTCTGGAAAAAAGCAAATTGGGAAATTCAGAAATCCARAAGTTCAGGAATCGAAAAATTCATAAATTCGAAAACTCTGGAATTCTAGAAAATTTGAAAAGTGGATAATTTCCGGAATTCCAAGTTTCCGAATTTGATTCGAAAATCATGAAATTCTGAACTTCCAAAATTTCAGAATTCCCAGGAGAATCTGAAAATCGAAGAAATTCAGAAATTTGGCTACTTCTGAAAATTTGGAAATTCAGAAGATCAGAAGTTCAGAAATTCAAAACTTCTGATATTCGAAAATTCTGAAATTCTAGGAAATTTGAAAGCGTGTAATTTCAGGAATTCCAAGTTTTCAGAAATTCAACATTTTTAAAAATCCTGAAAATAAAGGATATTAAGAAATTTGACAAATTCAAGAAAATATAGAAATTCTGAAATTCCAGAAATTCCAACTTTTCAGGATTTCCGAATTTCAACTGAAAATTCTAAAATCTCGCAAAAAAATCAGAAAATTGAATTTCCAATTAATTTTTTCGATTTTTCGGAGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>301 178 113 93 45 41 36 35 32 32 27 26 18 9 8 6</canonical_bands>
                <polymorphic_bands>301 178 113 93 45 41 41 36 35 32 27 26 18 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCGTCGTCTTTGTATTGAA</pcr_primer_p1>
		<pcr_primer_p2>ATTCGGAAATCCTGAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>487</pcr_amplicon_size>
		<canonical_amplicon>TTTCGTCGTCTTTGTATTGAATTGGGGAGGTCTGGAAAAAAGCAAATTGGGAAATTCAGAAATCCAGAAGTTCAGGAATCGAAAAATTCATAAATTCGAAAACTCTGGAATTCTAGAAAATTTGAAAAGTGGATAATTTCCGGAATTCCAAGTTTCCGAATTTGATTCGAAAATCATGAAATTCTGAACTTCCAAAATTTCAGAATTCCCAGGAGAATCTGAAAATCGAAGAAATTCAGAAATTTGGCTACTTCTGAAAATTTGGAAATTCAGAAGATCAGAAGTTCAGAAATTCAAAACTTCTGATATTCGAAAATTCTGAAATTCTAGGAAATTTGAAAGCGTGTAATTTCAGGAATTCCAAGTTTTCAGAAATTCAACATTTTTAAAAATCCTGAAAATAAAGGATATTAAGAAATTTGACAAATTCAAGAAAATATAGAAATTCTGAAATTCCAGAAATTCCAACTTTTCAGGATTTCCGAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCGTCGTCTTTGTATTGAATTGGGGAGGTCTGGAAAAAAGCAAATTGGGAAATTCAGAAATCCARAAGTTCAGGAATCGAAAAATTCATAAATTCGAAAACTCTGGAATTCTAGAAAATTTGAAAAGTGGATAATTTCCGGAATTCCAAGTTTCCGAATTTGATTCGAAAATCATGAAATTCTGAACTTCCAAAATTTCAGAATTCCCAGGAGAATCTGAAAATCGAAGAAATTCAGAAATTTGGCTACTTCTGAAAATTTGGAAATTCAGAAGATCAGAAGTTCAGAAATTCAAAACTTCTGATATTCGAAAATTCTGAAATTCTAGGAAATTTGAAAGCGTGTAATTTCAGGAATTCCAAGTTTTCAGAAATTCAACATTTTTAAAAATCCTGAAAATAAAGGATATTAAGAAATTTGACAAATTCAAGAAAATATAGAAATTCTGAAATTCCAGAAATTCCAACTTTTCAGGATTTCCGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36068</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>138820</contig_pos>
        <strand></strand>
        <context>gaaaaattca[T/G]aaattcgaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AGCAAATTGGGAAATTCAGAAATCCAGAAGTTCAGGAATCGAAAAATTCA</left_flank>
        <right_flank>AAATTCGAAAACTCTGGAATTCTAGAAAATTTGAAAAGTGGATAATTTCC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCAATAGATTTCCATATGTTTCTTCGTTTCCTTTCAACGGAAATTTGTCATCAAACTTGTGGACCAGTACTGCAATATCCGAATATTCTGGATCCCGAGGGCACGGAGGCAGAATCCCTTTTACAGTTTCGAAGACGTCTGGAATGGTTGTCGGTGCCTCTTTCACCCTTTCAATCCCTTTTTCCATTTCTTCCTTCACAAATTTATGAAATTTCGCTTGAATTTCTTCCCACTCCACATGATCAAATTCTGTCAATTCGCAATTTCCATTATATTTCATTTCGTGGGTTTTGAGAAAATATGCTACACACGAGCTGATAAAATCGTTTTCAGGCACTCCGAAGAAATCATAGTAACCCAAATGTTGCATGTAGACGTAGATGTCGTTTTTGTACATGTAGGTGTAGTTTTCGTCGTCTTTGTATTGAATTGGGGAGGTCTGGAAAAAAGCAAATTGGGAAATTCAGAAATCCAGAAGTTCAGGAATCGAAAAATTCATAAATTCGAAAACTCTGGAATTCTAGAAAATTTGAAAAGTGGATAATTTCCGGAATTCCAAGTTTCCGAATTTGATTCGAAAATCATGAAATTCTGAACTTCCAAAATTTCAGAATTCCCAGGAGAATCTGAAAATCGAAGAAATTCAGAAATTTGGCTACTTCTGAAAATTTGGAAATTCAGAAGATCAGAAGTTCAGAAATTCAAAACTTCTGATATTCGAAAATTCTGAAATTCTAGGAAATTTGAAAGCGTGTAATTTCAGGAATTCCAAGTTTTCAGAAATTCAACATTTTTAAAAATCCTGAAAATAAAGGATATTAAGAAATTTGACAAATTCAAGAAAATATAGAAATTCTGAAATTCCAGAAATTCCAACTTTTCAGGATTTCCGAATTTCAACTGAAAATTCTAAAATCTCGCAAAAAAATCAGAAAATTGAATTTCCAATTAATTTTTTCGATTTTTCGGAGTTTTCTCATTTCAGGAATTTTTGTAAAT</canonical>
            <polymorphic>TGCAATAGATTTCCATATGTTTCTTCGTTTCCTTTCAACGGAAATTTGTCATCAAACTTGTGGACCAGTACTGCAATATCCGAATATTCTGGATCCCGAGGGCACGGAGGCAGAATCCCTTTTACAGTTTCGAAGACGTCTGGAATGGTTGTCGGTGCCTCTTTCACCCTTTCAATCCCTTTTTCCATTTCTTCCTTCACAAATTTATGAAATTTCGCTTGAATTTCTTCCCACTCCACATGATCAAATTCTGTCAATTCGCAATTTCCATTATATTTCATTTCGTGGGTTTTGAGAAAATATGCTACACACGAGCTGATAAAATCGTTTTCAGGCACTCCGAAGAAATCATAGTAACCCAAATGTTGCATGTAGACGTAGATGTCGTTTTTGTACATGTAGGTGTAGTTTTCGTCGTCTTTGTATTGAATTGGGGAGGTCTGGAAAAAAGCAAATTGGGAAATTCAGAAATCCAGAAGTTCAGGAATCGAAAAATTCAKAAATTCGAAAACTCTGGAATTCTAGAAAATTTGAAAAGTGGATAATTTCCGGAATTCCAAGTTTCCGAATTTGATTCGAAAATCATGAAATTCTGAACTTCCAAAATTTCAGAATTCCCAGGAGAATCTGAAAATCGAAGAAATTCAGAAATTTGGCTACTTCTGAAAATTTGGAAATTCAGAAGATCAGAAGTTCAGAAATTCAAAACTTCTGATATTCGAAAATTCTGAAATTCTAGGAAATTTGAAAGCGTGTAATTTCAGGAATTCCAAGTTTTCAGAAATTCAACATTTTTAAAAATCCTGAAAATAAAGGATATTAAGAAATTTGACAAATTCAAGAAAATATAGAAATTCTGAAATTCCAGAAATTCCAACTTTTCAGGATTTCCGAATTTCAACTGAAAATTCTAAAATCTCGCAAAAAAATCAGAAAATTGAATTTCCAATTAATTTTTTCGATTTTTCGGAGTTTTCTCATTTCAGGAATTTTTGTAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCGTCGTCTTTGTATTGAA</pcr_primer_p1>
		<pcr_primer_p2>ATTCGGAAATCCTGAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>487</pcr_amplicon_size>
		<canonical_amplicon>TTTCGTCGTCTTTGTATTGAATTGGGGAGGTCTGGAAAAAAGCAAATTGGGAAATTCAGAAATCCAGAAGTTCAGGAATCGAAAAATTCATAAATTCGAAAACTCTGGAATTCTAGAAAATTTGAAAAGTGGATAATTTCCGGAATTCCAAGTTTCCGAATTTGATTCGAAAATCATGAAATTCTGAACTTCCAAAATTTCAGAATTCCCAGGAGAATCTGAAAATCGAAGAAATTCAGAAATTTGGCTACTTCTGAAAATTTGGAAATTCAGAAGATCAGAAGTTCAGAAATTCAAAACTTCTGATATTCGAAAATTCTGAAATTCTAGGAAATTTGAAAGCGTGTAATTTCAGGAATTCCAAGTTTTCAGAAATTCAACATTTTTAAAAATCCTGAAAATAAAGGATATTAAGAAATTTGACAAATTCAAGAAAATATAGAAATTCTGAAATTCCAGAAATTCCAACTTTTCAGGATTTCCGAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCGTCGTCTTTGTATTGAATTGGGGAGGTCTGGAAAAAAGCAAATTGGGAAATTCAGAAATCCAGAAGTTCAGGAATCGAAAAATTCAKAAATTCGAAAACTCTGGAATTCTAGAAAATTTGAAAAGTGGATAATTTCCGGAATTCCAAGTTTCCGAATTTGATTCGAAAATCATGAAATTCTGAACTTCCAAAATTTCAGAATTCCCAGGAGAATCTGAAAATCGAAGAAATTCAGAAATTTGGCTACTTCTGAAAATTTGGAAATTCAGAAGATCAGAAGTTCAGAAATTCAAAACTTCTGATATTCGAAAATTCTGAAATTCTAGGAAATTTGAAAGCGTGTAATTTCAGGAATTCCAAGTTTTCAGAAATTCAACATTTTTAAAAATCCTGAAAATAAAGGATATTAAGAAATTTGACAAATTCAAGAAAATATAGAAATTCTGAAATTCCAGAAATTCCAACTTTTCAGGATTTCCGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36069</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>138832</contig_pos>
        <strand></strand>
        <context>aattcgaaaa[C/T]tctggaattc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTCAGAAATCCAGAAGTTCAGGAATCGAAAAATTCATAAATTCGAAAA</left_flank>
        <right_flank>TCTGGAATTCTAGAAAATTTGAAAAGTGGATAATTTCCGGAATTCCAAGT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATATGTTTCTTCGTTTCCTTTCAACGGAAATTTGTCATCAAACTTGTGGACCAGTACTGCAATATCCGAATATTCTGGATCCCGAGGGCACGGAGGCAGAATCCCTTTTACAGTTTCGAAGACGTCTGGAATGGTTGTCGGTGCCTCTTTCACCCTTTCAATCCCTTTTTCCATTTCTTCCTTCACAAATTTATGAAATTTCGCTTGAATTTCTTCCCACTCCACATGATCAAATTCTGTCAATTCGCAATTTCCATTATATTTCATTTCGTGGGTTTTGAGAAAATATGCTACACACGAGCTGATAAAATCGTTTTCAGGCACTCCGAAGAAATCATAGTAACCCAAATGTTGCATGTAGACGTAGATGTCGTTTTTGTACATGTAGGTGTAGTTTTCGTCGTCTTTGTATTGAATTGGGGAGGTCTGGAAAAAAGCAAATTGGGAAATTCAGAAATCCAGAAGTTCAGGAATCGAAAAATTCATAAATTCGAAAACTCTGGAATTCTAGAAAATTTGAAAAGTGGATAATTTCCGGAATTCCAAGTTTCCGAATTTGATTCGAAAATCATGAAATTCTGAACTTCCAAAATTTCAGAATTCCCAGGAGAATCTGAAAATCGAAGAAATTCAGAAATTTGGCTACTTCTGAAAATTTGGAAATTCAGAAGATCAGAAGTTCAGAAATTCAAAACTTCTGATATTCGAAAATTCTGAAATTCTAGGAAATTTGAAAGCGTGTAATTTCAGGAATTCCAAGTTTTCAGAAATTCAACATTTTTAAAAATCCTGAAAATAAAGGATATTAAGAAATTTGACAAATTCAAGAAAATATAGAAATTCTGAAATTCCAGAAATTCCAACTTTTCAGGATTTCCGAATTTCAACTGAAAATTCTAAAATCTCGCAAAAAAATCAGAAAATTGAATTTCCAATTAATTTTTTCGATTTTTCGGAGTTTTCTCATTTCAGGAATTTTTGTAAATTTTCTTTATGGG</canonical>
            <polymorphic>CCATATGTTTCTTCGTTTCCTTTCAACGGAAATTTGTCATCAAACTTGTGGACCAGTACTGCAATATCCGAATATTCTGGATCCCGAGGGCACGGAGGCAGAATCCCTTTTACAGTTTCGAAGACGTCTGGAATGGTTGTCGGTGCCTCTTTCACCCTTTCAATCCCTTTTTCCATTTCTTCCTTCACAAATTTATGAAATTTCGCTTGAATTTCTTCCCACTCCACATGATCAAATTCTGTCAATTCGCAATTTCCATTATATTTCATTTCGTGGGTTTTGAGAAAATATGCTACACACGAGCTGATAAAATCGTTTTCAGGCACTCCGAAGAAATCATAGTAACCCAAATGTTGCATGTAGACGTAGATGTCGTTTTTGTACATGTAGGTGTAGTTTTCGTCGTCTTTGTATTGAATTGGGGAGGTCTGGAAAAAAGCAAATTGGGAAATTCAGAAATCCAGAAGTTCAGGAATCGAAAAATTCATAAATTCGAAAAYTCTGGAATTCTAGAAAATTTGAAAAGTGGATAATTTCCGGAATTCCAAGTTTCCGAATTTGATTCGAAAATCATGAAATTCTGAACTTCCAAAATTTCAGAATTCCCAGGAGAATCTGAAAATCGAAGAAATTCAGAAATTTGGCTACTTCTGAAAATTTGGAAATTCAGAAGATCAGAAGTTCAGAAATTCAAAACTTCTGATATTCGAAAATTCTGAAATTCTAGGAAATTTGAAAGCGTGTAATTTCAGGAATTCCAAGTTTTCAGAAATTCAACATTTTTAAAAATCCTGAAAATAAAGGATATTAAGAAATTTGACAAATTCAAGAAAATATAGAAATTCTGAAATTCCAGAAATTCCAACTTTTCAGGATTTCCGAATTTCAACTGAAAATTCTAAAATCTCGCAAAAAAATCAGAAAATTGAATTTCCAATTAATTTTTTCGATTTTTCGGAGTTTTCTCATTTCAGGAATTTTTGTAAATTTTCTTTATGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCGTCGTCTTTGTATTGAA</pcr_primer_p1>
		<pcr_primer_p2>ATTCGGAAATCCTGAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>487</pcr_amplicon_size>
		<canonical_amplicon>TTTCGTCGTCTTTGTATTGAATTGGGGAGGTCTGGAAAAAAGCAAATTGGGAAATTCAGAAATCCAGAAGTTCAGGAATCGAAAAATTCATAAATTCGAAAACTCTGGAATTCTAGAAAATTTGAAAAGTGGATAATTTCCGGAATTCCAAGTTTCCGAATTTGATTCGAAAATCATGAAATTCTGAACTTCCAAAATTTCAGAATTCCCAGGAGAATCTGAAAATCGAAGAAATTCAGAAATTTGGCTACTTCTGAAAATTTGGAAATTCAGAAGATCAGAAGTTCAGAAATTCAAAACTTCTGATATTCGAAAATTCTGAAATTCTAGGAAATTTGAAAGCGTGTAATTTCAGGAATTCCAAGTTTTCAGAAATTCAACATTTTTAAAAATCCTGAAAATAAAGGATATTAAGAAATTTGACAAATTCAAGAAAATATAGAAATTCTGAAATTCCAGAAATTCCAACTTTTCAGGATTTCCGAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCGTCGTCTTTGTATTGAATTGGGGAGGTCTGGAAAAAAGCAAATTGGGAAATTCAGAAATCCAGAAGTTCAGGAATCGAAAAATTCATAAATTCGAAAAYTCTGGAATTCTAGAAAATTTGAAAAGTGGATAATTTCCGGAATTCCAAGTTTCCGAATTTGATTCGAAAATCATGAAATTCTGAACTTCCAAAATTTCAGAATTCCCAGGAGAATCTGAAAATCGAAGAAATTCAGAAATTTGGCTACTTCTGAAAATTTGGAAATTCAGAAGATCAGAAGTTCAGAAATTCAAAACTTCTGATATTCGAAAATTCTGAAATTCTAGGAAATTTGAAAGCGTGTAATTTCAGGAATTCCAAGTTTTCAGAAATTCAACATTTTTAAAAATCCTGAAAATAAAGGATATTAAGAAATTTGACAAATTCAAGAAAATATAGAAATTCTGAAATTCCAGAAATTCCAACTTTTCAGGATTTCCGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36070</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>223066</contig_pos>
        <strand></strand>
        <context>GAAAAACACA[G/A]TCAAAACRAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTCCGCTTCAGTACCCGCCGTAAATCGACATGAATCAACAGAAAAACACA</left_flank>
        <right_flank>TCAAAACGAGTGCTACAGTAGTTTAGTGTTACTGGAAATCTGGCAAACAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTGACAACCAAGTCGTTCAGTTCAACAAGCAACAAACCGGATTAGAGCGAATTTTCGCCTCGGAAATGACCCACGACATTCACTTTTGCCGACTGATCAGGAAACTGGAAACGGTCATTTTTGAGGTACACAAAAATGCATTACTAGTCAATATACATTTTCTCAGGTGACGATCTATGGCAAAAATAAGAAAGAGGGCGACTTTAAATTGATAATACAGCCAGCGAAGACGAAGAAAACTGATAACGGAAGCATTTTGACAACACAGCACGTTTTGGAGCCGCCGAGTGTTTGGGTCGGAAATCCGCATAGGGGCATTTTCACATTTATGATGAAATTGGAAAAGGGTACGGAATCTGGAAATTGGTTTATGCCGCGTTCAAAGTTGATTTCCAGGAGAAACTAACTGGAAAAACGCTGTCCAAAACTATCATTGTTTTCCAGAGGCCTCCGCTTCAGTACCCGCCGTAAATCGACATGAATCAACAGAAAAACACAGTCAAAACGAGTGCTACAGTAGTTTAGTGTTACTGGAAATCTGGCAAACAATGACAGCTTTGGACAGGTTTTTTCCAGGAAATTTCTCCTGGAAATTAACTTTGAACGCGGCTTTTACTAAGGCATTAGGTTAAGTTTTTGGGGTCCGGTGTAAATCGAAAACTCACAACTGAACTACAGTACCGGACAATTCAAAACCCCGTTTTTCAGTGGATTTTGATCATTTTCAGGAGTCTAAAGCTCGGTTGTCAAGCTCACTTCAGGAGATTGTCAAACATACTTAGATAAAAAACTGTGCACTTACAGAAGTTTGCAAAATTCCTAATTTTTCAGCTATCTCCAATATCTGGAATAAACCAGTTTTTTTTTCACGTTCAATGCAAATACGGGCCAAAAATGGGTGTATCCCTGAAATGGGCGAATAGCTGCAAAACTAGGAATTTAGAAAAGTTTCGGCGAATGCAAAATTTCCAATTCAGGTCTATTTTACACCCTCCAAAA</canonical>
            <polymorphic>AGTGACAACCAAGTCGTTCAGTTCAACAAGCAACAAACCGGATTAGAGCGAATTTTCGCCTCGGAAATGACCCACGACATTCACTTTTGCCGACTGATCAGGAAACTGGAAACGGTCATTTTTGAGGTACACAAAAATGCATTACTAGTCAATATACATTTTCTCAGGTGACGATCTATGGCAAAAATAAGAAAGAGGGCGACTTTAAATTGATAATACAGCCAGCGAAGACGAAGAAAACTGATAACGGAAGCATTTTGACAACACAGCACGTTTTGGAGCCGCCGAGTGTTTGGGTCGGAAATCCGCATAGGGGCATTTTCACATTTATGATGAAATTGGAAAAGGGTACGGAATCTGGAAATTGGTTTATGCCGCGTTCAAAGTTGATTTCCAGGAGAAACTAACTGGAAAAACGCTGTCCAAAACTATCATTGTTTTCCAGAGGCCTCCGCTTCAGTACCCGCCGTAAATCGACATGAATCAACAGAAAAACACARTCAAAACGAGTGCTACAGTAGTTTAGTGTTACTGGAAATCTGGCAAACAATGACAGCTTTGGACAGGTTTTTTCCAGGAAATTTCTCCTGGAAATTAACTTTGAACGCGGCTTTTACTAAGGCATTAGGTTAAGTTTTTGGGGTCCGGTGTAAATCGAAAACTCACAACTGAACTACAGTACCGGACAATTCAAAACCCCGTTTTTCAGTGGATTTTGATCATTTTCAGGAGTCTAAAGCTCGGTTGTCAAGCTCACTTCAGGAGATTGTCAAACATACTTAGATAAAAAACTGTGCACTTACAGAAGTTTGCAAAATTCCTAATTTTTCAGCTATCTCCAATATCTGGAATAAACCAGTTTTTTTTTCACGTTCAATGCAAATACGGGCCAAAAATGGGTGTATCCCTGAAATGGGCGAATAGCTGCAAAACTAGGAATTTAGAAAAGTTTCGGCGAATGCAAAATTTCCAATTCAGGTCTATTTTACACCCTCCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>385 207 161 115 114 18</canonical_bands>
                <polymorphic_bands>403 207 161 115 114</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTATCATTGTTTTCCAGAGG</pcr_primer_p1>
		<pcr_primer_p2>AGTTGTGAGTTTTCGATTTACAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AACTATCATTGTTTTCCAGAGGCCTCCGCTTCAGTACCCGCCGTAAATCGACATGAATCAACAGAAAAACACAGTCAAAACGAGTGCTACAGTAGTTTAGTGTTACTGGAAATCTGGCAAACAATGACAGCTTTGGACAGGTTTTTTCCAGGAAATTTCTCCTGGAAATTAACTTTGAACGCGGCTTTTACTAAGGCATTAGGTTAAGTTTTTGGGGTCCGGTGTAAATCGAAAACTCACAACT</canonical_amplicon>
		<polymorphic_amplicon>AACTATCATTGTTTTCCAGAGGCCTCCGCTTCAGTACCCGCCGTAAATCGACATGAATCAACAGAAAAACACARTCAAAACGAGTGCTACAGTAGTTTAGTGTTACTGGAAATCTGGCAAACAATGACAGCTTTGGACAGGTTTTTTCCAGGAAATTTCTCCTGGAAATTAACTTTGAACGCGGCTTTTACTAAGGCATTAGGTTAAGTTTTTGGGGTCCGGTGTAAATCGAAAACTCACAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36071</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>223074</contig_pos>
        <strand>+</strand>
        <context>CARTCAAAAC[A/G]AGTGCTACAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGTACCCGCCGTAAATCGACATGAATCAACAGAAAAACACAGTCAAAAC</left_flank>
        <right_flank>AGTGCTACAGTAGTTTAGTGTTACTGGAAATCTGGCAAACAATGACAGCT</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAGTCGTTCAGTTCAACAAGCAACAAACCGGATTAGAGCGAATTTTCGCCTCGGAAATGACCCACGACATTCACTTTTGCCGACTGATCAGGAAACTGGAAACGGTCATTTTTGAGGTACACAAAAATGCATTACTAGTCAATATACATTTTCTCAGGTGACGATCTATGGCAAAAATAAGAAAGAGGGCGACTTTAAATTGATAATACAGCCAGCGAAGACGAAGAAAACTGATAACGGAAGCATTTTGACAACACAGCACGTTTTGGAGCCGCCGAGTGTTTGGGTCGGAAATCCGCATAGGGGCATTTTCACATTTATGATGAAATTGGAAAAGGGTACGGAATCTGGAAATTGGTTTATGCCGCGTTCAAAGTTGATTTCCAGGAGAAACTAACTGGAAAAACGCTGTCCAAAACTATCATTGTTTTCCAGAGGCCTCCGCTTCAGTACCCGCCGTAAATCGACATGAATCAACAGAAAAACACAGTCAAAACGAGTGCTACAGTAGTTTAGTGTTACTGGAAATCTGGCAAACAATGACAGCTTTGGACAGGTTTTTTCCAGGAAATTTCTCCTGGAAATTAACTTTGAACGCGGCTTTTACTAAGGCATTAGGTTAAGTTTTTGGGGTCCGGTGTAAATCGAAAACTCACAACTGAACTACAGTACCGGACAATTCAAAACCCCGTTTTTCAGTGGATTTTGATCATTTTCAGGAGTCTAAAGCTCGGTTGTCAAGCTCACTTCAGGAGATTGTCAAACATACTTAGATAAAAAACTGTGCACTTACAGAAGTTTGCAAAATTCCTAATTTTTCAGCTATCTCCAATATCTGGAATAAACCAGTTTTTTTTTCACGTTCAATGCAAATACGGGCCAAAAATGGGTGTATCCCTGAAATGGGCGAATAGCTGCAAAACTAGGAATTTAGAAAAGTTTCGGCGAATGCAAAATTTCCAATTCAGGTCTATTTTACACCCTCCAAAATTTTGTTA</canonical>
            <polymorphic>CCAAGTCGTTCAGTTCAACAAGCAACAAACCGGATTAGAGCGAATTTTCGCCTCGGAAATGACCCACGACATTCACTTTTGCCGACTGATCAGGAAACTGGAAACGGTCATTTTTGAGGTACACAAAAATGCATTACTAGTCAATATACATTTTCTCAGGTGACGATCTATGGCAAAAATAAGAAAGAGGGCGACTTTAAATTGATAATACAGCCAGCGAAGACGAAGAAAACTGATAACGGAAGCATTTTGACAACACAGCACGTTTTGGAGCCGCCGAGTGTTTGGGTCGGAAATCCGCATAGGGGCATTTTCACATTTATGATGAAATTGGAAAAGGGTACGGAATCTGGAAATTGGTTTATGCCGCGTTCAAAGTTGATTTCCAGGAGAAACTAACTGGAAAAACGCTGTCCAAAACTATCATTGTTTTCCAGAGGCCTCCGCTTCAGTACCCGCCGTAAATCGACATGAATCAACAGAAAAACACAGTCAAAACRAGTGCTACAGTAGTTTAGTGTTACTGGAAATCTGGCAAACAATGACAGCTTTGGACAGGTTTTTTCCAGGAAATTTCTCCTGGAAATTAACTTTGAACGCGGCTTTTACTAAGGCATTAGGTTAAGTTTTTGGGGTCCGGTGTAAATCGAAAACTCACAACTGAACTACAGTACCGGACAATTCAAAACCCCGTTTTTCAGTGGATTTTGATCATTTTCAGGAGTCTAAAGCTCGGTTGTCAAGCTCACTTCAGGAGATTGTCAAACATACTTAGATAAAAAACTGTGCACTTACAGAAGTTTGCAAAATTCCTAATTTTTCAGCTATCTCCAATATCTGGAATAAACCAGTTTTTTTTTCACGTTCAATGCAAATACGGGCCAAAAATGGGTGTATCCCTGAAATGGGCGAATAGCTGCAAAACTAGGAATTTAGAAAAGTTTCGGCGAATGCAAAATTTCCAATTCAGGTCTATTTTACACCCTCCAAAATTTTGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTATCATTGTTTTCCAGAGG</pcr_primer_p1>
		<pcr_primer_p2>AGTTGTGAGTTTTCGATTTACAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AACTATCATTGTTTTCCAGAGGCCTCCGCTTCAGTACCCGCCGTAAATCGACATGAATCAACAGAAAAACACAGTCAAAACGAGTGCTACAGTAGTTTAGTGTTACTGGAAATCTGGCAAACAATGACAGCTTTGGACAGGTTTTTTCCAGGAAATTTCTCCTGGAAATTAACTTTGAACGCGGCTTTTACTAAGGCATTAGGTTAAGTTTTTGGGGTCCGGTGTAAATCGAAAACTCACAACT</canonical_amplicon>
		<polymorphic_amplicon>AACTATCATTGTTTTCCAGAGGCCTCCGCTTCAGTACCCGCCGTAAATCGACATGAATCAACAGAAAAACACAGTCAAAACRAGTGCTACAGTAGTTTAGTGTTACTGGAAATCTGGCAAACAATGACAGCTTTGGACAGGTTTTTTCCAGGAAATTTCTCCTGGAAATTAACTTTGAACGCGGCTTTTACTAAGGCATTAGGTTAAGTTTTTGGGGTCCGGTGTAAATCGAAAACTCACAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36072</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>223110</contig_pos>
        <strand>+</strand>
        <context>GGAAATCTGG[A/C]AAACAATGAC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACACAGTCAAAACGAGTGCTACAGTAGTTTAGTGTTACTGGAAATCTGG</left_flank>
        <right_flank>AAACAATGACAGCTTTGGACAGGTTTTTTCCAGGAAATTTCTCCTGGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGCGAATTTTCGCCTCGGAAATGACCCACGACATTCACTTTTGCCGACTGATCAGGAAACTGGAAACGGTCATTTTTGAGGTACACAAAAATGCATTACTAGTCAATATACATTTTCTCAGGTGACGATCTATGGCAAAAATAAGAAAGAGGGCGACTTTAAATTGATAATACAGCCAGCGAAGACGAAGAAAACTGATAACGGAAGCATTTTGACAACACAGCACGTTTTGGAGCCGCCGAGTGTTTGGGTCGGAAATCCGCATAGGGGCATTTTCACATTTATGATGAAATTGGAAAAGGGTACGGAATCTGGAAATTGGTTTATGCCGCGTTCAAAGTTGATTTCCAGGAGAAACTAACTGGAAAAACGCTGTCCAAAACTATCATTGTTTTCCAGAGGCCTCCGCTTCAGTACCCGCCGTAAATCGACATGAATCAACAGAAAAACACAGTCAAAACGAGTGCTACAGTAGTTTAGTGTTACTGGAAATCTGGCAAACAATGACAGCTTTGGACAGGTTTTTTCCAGGAAATTTCTCCTGGAAATTAACTTTGAACGCGGCTTTTACTAAGGCATTAGGTTAAGTTTTTGGGGTCCGGTGTAAATCGAAAACTCACAACTGAACTACAGTACCGGACAATTCAAAACCCCGTTTTTCAGTGGATTTTGATCATTTTCAGGAGTCTAAAGCTCGGTTGTCAAGCTCACTTCAGGAGATTGTCAAACATACTTAGATAAAAAACTGTGCACTTACAGAAGTTTGCAAAATTCCTAATTTTTCAGCTATCTCCAATATCTGGAATAAACCAGTTTTTTTTTCACGTTCAATGCAAATACGGGCCAAAAATGGGTGTATCCCTGAAATGGGCGAATAGCTGCAAAACTAGGAATTTAGAAAAGTTTCGGCGAATGCAAAATTTCCAATTCAGGTCTATTTTACACCCTCCAAAATTTTGTTAGTGATCGGACATTTGACAGACAAGCTCCAGACTCCT</canonical>
            <polymorphic>AGAGCGAATTTTCGCCTCGGAAATGACCCACGACATTCACTTTTGCCGACTGATCAGGAAACTGGAAACGGTCATTTTTGAGGTACACAAAAATGCATTACTAGTCAATATACATTTTCTCAGGTGACGATCTATGGCAAAAATAAGAAAGAGGGCGACTTTAAATTGATAATACAGCCAGCGAAGACGAAGAAAACTGATAACGGAAGCATTTTGACAACACAGCACGTTTTGGAGCCGCCGAGTGTTTGGGTCGGAAATCCGCATAGGGGCATTTTCACATTTATGATGAAATTGGAAAAGGGTACGGAATCTGGAAATTGGTTTATGCCGCGTTCAAAGTTGATTTCCAGGAGAAACTAACTGGAAAAACGCTGTCCAAAACTATCATTGTTTTCCAGAGGCCTCCGCTTCAGTACCCGCCGTAAATCGACATGAATCAACAGAAAAACACAGTCAAAACGAGTGCTACAGTAGTTTAGTGTTACTGGAAATCTGGMAAACAATGACAGCTTTGGACAGGTTTTTTCCAGGAAATTTCTCCTGGAAATTAACTTTGAACGCGGCTTTTACTAAGGCATTAGGTTAAGTTTTTGGGGTCCGGTGTAAATCGAAAACTCACAACTGAACTACAGTACCGGACAATTCAAAACCCCGTTTTTCAGTGGATTTTGATCATTTTCAGGAGTCTAAAGCTCGGTTGTCAAGCTCACTTCAGGAGATTGTCAAACATACTTAGATAAAAAACTGTGCACTTACAGAAGTTTGCAAAATTCCTAATTTTTCAGCTATCTCCAATATCTGGAATAAACCAGTTTTTTTTTCACGTTCAATGCAAATACGGGCCAAAAATGGGTGTATCCCTGAAATGGGCGAATAGCTGCAAAACTAGGAATTTAGAAAAGTTTCGGCGAATGCAAAATTTCCAATTCAGGTCTATTTTACACCCTCCAAAATTTTGTTAGTGATCGGACATTTGACAGACAAGCTCCAGACTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTATCATTGTTTTCCAGAGG</pcr_primer_p1>
		<pcr_primer_p2>AGTTGTGAGTTTTCGATTTACAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AACTATCATTGTTTTCCAGAGGCCTCCGCTTCAGTACCCGCCGTAAATCGACATGAATCAACAGAAAAACACAGTCAAAACGAGTGCTACAGTAGTTTAGTGTTACTGGAAATCTGGCAAACAATGACAGCTTTGGACAGGTTTTTTCCAGGAAATTTCTCCTGGAAATTAACTTTGAACGCGGCTTTTACTAAGGCATTAGGTTAAGTTTTTGGGGTCCGGTGTAAATCGAAAACTCACAACT</canonical_amplicon>
		<polymorphic_amplicon>AACTATCATTGTTTTCCAGAGGCCTCCGCTTCAGTACCCGCCGTAAATCGACATGAATCAACAGAAAAACACAGTCAAAACGAGTGCTACAGTAGTTTAGTGTTACTGGAAATCTGGMAAACAATGACAGCTTTGGACAGGTTTTTTCCAGGAAATTTCTCCTGGAAATTAACTTTGAACGCGGCTTTTACTAAGGCATTAGGTTAAGTTTTTGGGGTCCGGTGTAAATCGAAAACTCACAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36073</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>223178</contig_pos>
        <strand>+</strand>
        <context>TGAACGCGGC[A/T]TTTACTAAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACAGGTTTTTTCCAGGAAATTTCTCCTGGAAATTAACTTTGAACGCGGC</left_flank>
        <right_flank>TTTACTAAGGCATTAGGTTAAGTTTTTGGGGTCCGGTGTAAATCGAAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGTCATTTTTGAGGTACACAAAAATGCATTACTAGTCAATATACATTTTCTCAGGTGACGATCTATGGCAAAAATAAGAAAGAGGGCGACTTTAAATTGATAATACAGCCAGCGAAGACGAAGAAAACTGATAACGGAAGCATTTTGACAACACAGCACGTTTTGGAGCCGCCGAGTGTTTGGGTCGGAAATCCGCATAGGGGCATTTTCACATTTATGATGAAATTGGAAAAGGGTACGGAATCTGGAAATTGGTTTATGCCGCGTTCAAAGTTGATTTCCAGGAGAAACTAACTGGAAAAACGCTGTCCAAAACTATCATTGTTTTCCAGAGGCCTCCGCTTCAGTACCCGCCGTAAATCGACATGAATCAACAGAAAAACACAGTCAAAACGAGTGCTACAGTAGTTTAGTGTTACTGGAAATCTGGCAAACAATGACAGCTTTGGACAGGTTTTTTCCAGGAAATTTCTCCTGGAAATTAACTTTGAACGCGGCTTTTACTAAGGCATTAGGTTAAGTTTTTGGGGTCCGGTGTAAATCGAAAACTCACAACTGAACTACAGTACCGGACAATTCAAAACCCCGTTTTTCAGTGGATTTTGATCATTTTCAGGAGTCTAAAGCTCGGTTGTCAAGCTCACTTCAGGAGATTGTCAAACATACTTAGATAAAAAACTGTGCACTTACAGAAGTTTGCAAAATTCCTAATTTTTCAGCTATCTCCAATATCTGGAATAAACCAGTTTTTTTTTCACGTTCAATGCAAATACGGGCCAAAAATGGGTGTATCCCTGAAATGGGCGAATAGCTGCAAAACTAGGAATTTAGAAAAGTTTCGGCGAATGCAAAATTTCCAATTCAGGTCTATTTTACACCCTCCAAAATTTTGTTAGTGATCGGACATTTGACAGACAAGCTCCAGACTCCTGAAAATGGTCAAAATGACGAAAAATGAACCGAAAAATACGTTTTTGTGTATATCTTATGCATTTAATC</canonical>
            <polymorphic>CGGTCATTTTTGAGGTACACAAAAATGCATTACTAGTCAATATACATTTTCTCAGGTGACGATCTATGGCAAAAATAAGAAAGAGGGCGACTTTAAATTGATAATACAGCCAGCGAAGACGAAGAAAACTGATAACGGAAGCATTTTGACAACACAGCACGTTTTGGAGCCGCCGAGTGTTTGGGTCGGAAATCCGCATAGGGGCATTTTCACATTTATGATGAAATTGGAAAAGGGTACGGAATCTGGAAATTGGTTTATGCCGCGTTCAAAGTTGATTTCCAGGAGAAACTAACTGGAAAAACGCTGTCCAAAACTATCATTGTTTTCCAGAGGCCTCCGCTTCAGTACCCGCCGTAAATCGACATGAATCAACAGAAAAACACAGTCAAAACGAGTGCTACAGTAGTTTAGTGTTACTGGAAATCTGGCAAACAATGACAGCTTTGGACAGGTTTTTTCCAGGAAATTTCTCCTGGAAATTAACTTTGAACGCGGCWTTTACTAAGGCATTAGGTTAAGTTTTTGGGGTCCGGTGTAAATCGAAAACTCACAACTGAACTACAGTACCGGACAATTCAAAACCCCGTTTTTCAGTGGATTTTGATCATTTTCAGGAGTCTAAAGCTCGGTTGTCAAGCTCACTTCAGGAGATTGTCAAACATACTTAGATAAAAAACTGTGCACTTACAGAAGTTTGCAAAATTCCTAATTTTTCAGCTATCTCCAATATCTGGAATAAACCAGTTTTTTTTTCACGTTCAATGCAAATACGGGCCAAAAATGGGTGTATCCCTGAAATGGGCGAATAGCTGCAAAACTAGGAATTTAGAAAAGTTTCGGCGAATGCAAAATTTCCAATTCAGGTCTATTTTACACCCTCCAAAATTTTGTTAGTGATCGGACATTTGACAGACAAGCTCCAGACTCCTGAAAATGGTCAAAATGACGAAAAATGAACCGAAAAATACGTTTTTGTGTATATCTTATGCATTTAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>167 129 109 108 108 80 80 60 57 54 35 13</canonical_bands>
                <polymorphic_bands>183 167 109 108 108 80 80 60 57 35 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTATCATTGTTTTCCAGAGG</pcr_primer_p1>
		<pcr_primer_p2>AGTTGTGAGTTTTCGATTTACAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AACTATCATTGTTTTCCAGAGGCCTCCGCTTCAGTACCCGCCGTAAATCGACATGAATCAACAGAAAAACACAGTCAAAACGAGTGCTACAGTAGTTTAGTGTTACTGGAAATCTGGCAAACAATGACAGCTTTGGACAGGTTTTTTCCAGGAAATTTCTCCTGGAAATTAACTTTGAACGCGGCTTTTACTAAGGCATTAGGTTAAGTTTTTGGGGTCCGGTGTAAATCGAAAACTCACAACT</canonical_amplicon>
		<polymorphic_amplicon>AACTATCATTGTTTTCCAGAGGCCTCCGCTTCAGTACCCGCCGTAAATCGACATGAATCAACAGAAAAACACAGTCAAAACGAGTGCTACAGTAGTTTAGTGTTACTGGAAATCTGGCAAACAATGACAGCTTTGGACAGGTTTTTTCCAGGAAATTTCTCCTGGAAATTAACTTTGAACGCGGCWTTTACTAAGGCATTAGGTTAAGTTTTTGGGGTCCGGTGTAAATCGAAAACTCACAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36074</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>223201</contig_pos>
        <strand>+</strand>
        <context>TTAGGTTAAG[C/T]TTTTGGGGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCCTGGAAATTAACTTTGAACGCGGCTTTTACTAAGGCATTAGGTTAAG</left_flank>
        <right_flank>TTTTGGGGTCCGGTGTAAATCGAAAACTCACAACTGAACTACAGTACCGG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGCATTACTAGTCAATATACATTTTCTCAGGTGACGATCTATGGCAAAAATAAGAAAGAGGGCGACTTTAAATTGATAATACAGCCAGCGAAGACGAAGAAAACTGATAACGGAAGCATTTTGACAACACAGCACGTTTTGGAGCCGCCGAGTGTTTGGGTCGGAAATCCGCATAGGGGCATTTTCACATTTATGATGAAATTGGAAAAGGGTACGGAATCTGGAAATTGGTTTATGCCGCGTTCAAAGTTGATTTCCAGGAGAAACTAACTGGAAAAACGCTGTCCAAAACTATCATTGTTTTCCAGAGGCCTCCGCTTCAGTACCCGCCGTAAATCGACATGAATCAACAGAAAAACACAGTCAAAACGAGTGCTACAGTAGTTTAGTGTTACTGGAAATCTGGCAAACAATGACAGCTTTGGACAGGTTTTTTCCAGGAAATTTCTCCTGGAAATTAACTTTGAACGCGGCTTTTACTAAGGCATTAGGTTAAGTTTTTGGGGTCCGGTGTAAATCGAAAACTCACAACTGAACTACAGTACCGGACAATTCAAAACCCCGTTTTTCAGTGGATTTTGATCATTTTCAGGAGTCTAAAGCTCGGTTGTCAAGCTCACTTCAGGAGATTGTCAAACATACTTAGATAAAAAACTGTGCACTTACAGAAGTTTGCAAAATTCCTAATTTTTCAGCTATCTCCAATATCTGGAATAAACCAGTTTTTTTTTCACGTTCAATGCAAATACGGGCCAAAAATGGGTGTATCCCTGAAATGGGCGAATAGCTGCAAAACTAGGAATTTAGAAAAGTTTCGGCGAATGCAAAATTTCCAATTCAGGTCTATTTTACACCCTCCAAAATTTTGTTAGTGATCGGACATTTGACAGACAAGCTCCAGACTCCTGAAAATGGTCAAAATGACGAAAAATGAACCGAAAAATACGTTTTTGTGTATATCTTATGCATTTAATCGGATAGTGTATTTATTAGGATTT</canonical>
            <polymorphic>AATGCATTACTAGTCAATATACATTTTCTCAGGTGACGATCTATGGCAAAAATAAGAAAGAGGGCGACTTTAAATTGATAATACAGCCAGCGAAGACGAAGAAAACTGATAACGGAAGCATTTTGACAACACAGCACGTTTTGGAGCCGCCGAGTGTTTGGGTCGGAAATCCGCATAGGGGCATTTTCACATTTATGATGAAATTGGAAAAGGGTACGGAATCTGGAAATTGGTTTATGCCGCGTTCAAAGTTGATTTCCAGGAGAAACTAACTGGAAAAACGCTGTCCAAAACTATCATTGTTTTCCAGAGGCCTCCGCTTCAGTACCCGCCGTAAATCGACATGAATCAACAGAAAAACACAGTCAAAACGAGTGCTACAGTAGTTTAGTGTTACTGGAAATCTGGCAAACAATGACAGCTTTGGACAGGTTTTTTCCAGGAAATTTCTCCTGGAAATTAACTTTGAACGCGGCTTTTACTAAGGCATTAGGTTAAGYTTTTGGGGTCCGGTGTAAATCGAAAACTCACAACTGAACTACAGTACCGGACAATTCAAAACCCCGTTTTTCAGTGGATTTTGATCATTTTCAGGAGTCTAAAGCTCGGTTGTCAAGCTCACTTCAGGAGATTGTCAAACATACTTAGATAAAAAACTGTGCACTTACAGAAGTTTGCAAAATTCCTAATTTTTCAGCTATCTCCAATATCTGGAATAAACCAGTTTTTTTTTCACGTTCAATGCAAATACGGGCCAAAAATGGGTGTATCCCTGAAATGGGCGAATAGCTGCAAAACTAGGAATTTAGAAAAGTTTCGGCGAATGCAAAATTTCCAATTCAGGTCTATTTTACACCCTCCAAAATTTTGTTAGTGATCGGACATTTGACAGACAAGCTCCAGACTCCTGAAAATGGTCAAAATGACGAAAAATGAACCGAAAAATACGTTTTTGTGTATATCTTATGCATTTAATCGGATAGTGTATTTATTAGGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAATGACAGCTTTGGACAG</pcr_primer_p1>
		<pcr_primer_p2>CCTAATAAATACACTATCCGATTAAA</pcr_primer_p2>
		<pcr_amplicon_size>585</pcr_amplicon_size>
		<canonical_amplicon>ACAATGACAGCTTTGGACAGGTTTTTTCCAGGAAATTTCTCCTGGAAATTAACTTTGAACGCGGCTTTTACTAAGGCATTAGGTTAAGTTTTTGGGGTCCGGTGTAAATCGAAAACTCACAACTGAACTACAGTACCGGACAATTCAAAACCCCGTTTTTCAGTGGATTTTGATCATTTTCAGGAGTCTAAAGCTCGGTTGTCAAGCTCACTTCAGGAGATTGTCAAACATACTTAGATAAAAAACTGTGCACTTACAGAAGTTTGCAAAATTCCTAATTTTTCAGCTATCTCCAATATCTGGAATAAACCAGTTTTTTTTTCACGTTCAATGCAAATACGGGCCAAAAATGGGTGTATCCCTGAAATGGGCGAATAGCTGCAAAACTAGGAATTTAGAAAAGTTTCGGCGAATGCAAAATTTCCAATTCAGGTCTATTTTACACCCTCCAAAATTTTGTTAGTGATCGGACATTTGACAGACAAGCTCCAGACTCCTGAAAATGGTCAAAATGACGAAAAATGAACCGAAAAATACGTTTTTGTGTATATCTTATGCATTTAATCGGATAGTGTATTTATTAGG</canonical_amplicon>
		<polymorphic_amplicon>ACAATGACAGCTTTGGACAGGTTTTTTCCAGGAAATTTCTCCTGGAAATTAACTTTGAACGCGGCTTTTACTAAGGCATTAGGTTAAGYTTTTGGGGTCCGGTGTAAATCGAAAACTCACAACTGAACTACAGTACCGGACAATTCAAAACCCCGTTTTTCAGTGGATTTTGATCATTTTCAGGAGTCTAAAGCTCGGTTGTCAAGCTCACTTCAGGAGATTGTCAAACATACTTAGATAAAAAACTGTGCACTTACAGAAGTTTGCAAAATTCCTAATTTTTCAGCTATCTCCAATATCTGGAATAAACCAGTTTTTTTTTCACGTTCAATGCAAATACGGGCCAAAAATGGGTGTATCCCTGAAATGGGCGAATAGCTGCAAAACTAGGAATTTAGAAAAGTTTCGGCGAATGCAAAATTTCCAATTCAGGTCTATTTTACACCCTCCAAAATTTTGTTAGTGATCGGACATTTGACAGACAAGCTCCAGACTCCTGAAAATGGTCAAAATGACGAAAAATGAACCGAAAAATACGTTTTTGTGTATATCTTATGCATTTAATCGGATAGTGTATTTATTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36075</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>223346</contig_pos>
        <strand></strand>
        <context>tcaaacatac[T/C]tagataaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAGTCTAAAGCTCGGTTGTCAAGCTCACTTCAGGAGATTGTCAAACATAC</left_flank>
        <right_flank>TAGATAAAAAACTGTGCACTTACAGAAGTTTGCAAAATTCCTAATTTTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCGCCGAGTGTTTGGGTCGGAAATCCGCATAGGGGCATTTTCACATTTATGATGAAATTGGAAAAGGGTACGGAATCTGGAAATTGGTTTATGCCGCGTTCAAAGTTGATTTCCAGGAGAAACTAACTGGAAAAACGCTGTCCAAAACTATCATTGTTTTCCAGAGGCCTCCGCTTCAGTACCCGCCGTAAATCGACATGAATCAACAGAAAAACACAGTCAAAACGAGTGCTACAGTAGTTTAGTGTTACTGGAAATCTGGCAAACAATGACAGCTTTGGACAGGTTTTTTCCAGGAAATTTCTCCTGGAAATTAACTTTGAACGCGGCTTTTACTAAGGCATTAGGTTAAGTTTTTGGGGTCCGGTGTAAATCGAAAACTCACAACTGAACTACAGTACCGGACAATTCAAAACCCCGTTTTTCAGTGGATTTTGATCATTTTCAGGAGTCTAAAGCTCGGTTGTCAAGCTCACTTCAGGAGATTGTCAAACATACTTAGATAAAAAACTGTGCACTTACAGAAGTTTGCAAAATTCCTAATTTTTCAGCTATCTCCAATATCTGGAATAAACCAGTTTTTTTTTCACGTTCAATGCAAATACGGGCCAAAAATGGGTGTATCCCTGAAATGGGCGAATAGCTGCAAAACTAGGAATTTAGAAAAGTTTCGGCGAATGCAAAATTTCCAATTCAGGTCTATTTTACACCCTCCAAAATTTTGTTAGTGATCGGACATTTGACAGACAAGCTCCAGACTCCTGAAAATGGTCAAAATGACGAAAAATGAACCGAAAAATACGTTTTTGTGTATATCTTATGCATTTAATCGGATAGTGTATTTATTAGGATTTATTACAGGATTTCTGTACAAAATCATGTCTTGATTGAAATAAGGCATTCTCAAGATGAGATTAGAAATTTTCAAAAACTCAGAACTCTACTTTTCCCAAAATTTCTATTAATCCAACACCATTCCTTATTTTACAGACACCCTCC</canonical>
            <polymorphic>GCCGCCGAGTGTTTGGGTCGGAAATCCGCATAGGGGCATTTTCACATTTATGATGAAATTGGAAAAGGGTACGGAATCTGGAAATTGGTTTATGCCGCGTTCAAAGTTGATTTCCAGGAGAAACTAACTGGAAAAACGCTGTCCAAAACTATCATTGTTTTCCAGAGGCCTCCGCTTCAGTACCCGCCGTAAATCGACATGAATCAACAGAAAAACACAGTCAAAACGAGTGCTACAGTAGTTTAGTGTTACTGGAAATCTGGCAAACAATGACAGCTTTGGACAGGTTTTTTCCAGGAAATTTCTCCTGGAAATTAACTTTGAACGCGGCTTTTACTAAGGCATTAGGTTAAGTTTTTGGGGTCCGGTGTAAATCGAAAACTCACAACTGAACTACAGTACCGGACAATTCAAAACCCCGTTTTTCAGTGGATTTTGATCATTTTCAGGAGTCTAAAGCTCGGTTGTCAAGCTCACTTCAGGAGATTGTCAAACATACYTAGATAAAAAACTGTGCACTTACAGAAGTTTGCAAAATTCCTAATTTTTCAGCTATCTCCAATATCTGGAATAAACCAGTTTTTTTTTCACGTTCAATGCAAATACGGGCCAAAAATGGGTGTATCCCTGAAATGGGCGAATAGCTGCAAAACTAGGAATTTAGAAAAGTTTCGGCGAATGCAAAATTTCCAATTCAGGTCTATTTTACACCCTCCAAAATTTTGTTAGTGATCGGACATTTGACAGACAAGCTCCAGACTCCTGAAAATGGTCAAAATGACGAAAAATGAACCGAAAAATACGTTTTTGTGTATATCTTATGCATTTAATCGGATAGTGTATTTATTAGGATTTATTACAGGATTTCTGTACAAAATCATGTCTTGATTGAAATAAGGCATTCTCAAGATGAGATTAGAAATTTTCAAAAACTCAGAACTCTACTTTTCCCAAAATTTCTATTAATCCAACACCATTCCTTATTTTACAGACACCCTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>434 337 162 67</canonical_bands>
                <polymorphic_bands>596 337 67</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCGAAAACTCACAACTGAACT</pcr_primer_p1>
		<pcr_primer_p2>CCTAATAAATACACTATCCGATTAAA</pcr_primer_p2>
		<pcr_amplicon_size>478</pcr_amplicon_size>
		<canonical_amplicon>ATCGAAAACTCACAACTGAACTACAGTACCGGACAATTCAAAACCCCGTTTTTCAGTGGATTTTGATCATTTTCAGGAGTCTAAAGCTCGGTTGTCAAGCTCACTTCAGGAGATTGTCAAACATACTTAGATAAAAAACTGTGCACTTACAGAAGTTTGCAAAATTCCTAATTTTTCAGCTATCTCCAATATCTGGAATAAACCAGTTTTTTTTTCACGTTCAATGCAAATACGGGCCAAAAATGGGTGTATCCCTGAAATGGGCGAATAGCTGCAAAACTAGGAATTTAGAAAAGTTTCGGCGAATGCAAAATTTCCAATTCAGGTCTATTTTACACCCTCCAAAATTTTGTTAGTGATCGGACATTTGACAGACAAGCTCCAGACTCCTGAAAATGGTCAAAATGACGAAAAATGAACCGAAAAATACGTTTTTGTGTATATCTTATGCATTTAATCGGATAGTGTATTTATTAGG</canonical_amplicon>
		<polymorphic_amplicon>ATCGAAAACTCACAACTGAACTACAGTACCGGACAATTCAAAACCCCGTTTTTCAGTGGATTTTGATCATTTTCAGGAGTCTAAAGCTCGGTTGTCAAGCTCACTTCAGGAGATTGTCAAACATACYTAGATAAAAAACTGTGCACTTACAGAAGTTTGCAAAATTCCTAATTTTTCAGCTATCTCCAATATCTGGAATAAACCAGTTTTTTTTTCACGTTCAATGCAAATACGGGCCAAAAATGGGTGTATCCCTGAAATGGGCGAATAGCTGCAAAACTAGGAATTTAGAAAAGTTTCGGCGAATGCAAAATTTCCAATTCAGGTCTATTTTACACCCTCCAAAATTTTGTTAGTGATCGGACATTTGACAGACAAGCTCCAGACTCCTGAAAATGGTCAAAATGACGAAAAATGAACCGAAAAATACGTTTTTGTGTATATCTTATGCATTTAATCGGATAGTGTATTTATTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36076</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>223542</contig_pos>
        <strand></strand>
        <context>atttccaatt[C/T]aggtctattt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCAAAACTAGGAATTTAGAAAAGTTTCGGCGAATGCAAAATTTCCAATT</left_flank>
        <right_flank>AGGTCTATTTTACACCCTCCAAAATTTTGTTAGTGATCGGACATTTGACA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATGAATCAACAGAAAAACACAGTCAAAACGAGTGCTACAGTAGTTTAGTGTTACTGGAAATCTGGCAAACAATGACAGCTTTGGACAGGTTTTTTCCAGGAAATTTCTCCTGGAAATTAACTTTGAACGCGGCTTTTACTAAGGCATTAGGTTAAGTTTTTGGGGTCCGGTGTAAATCGAAAACTCACAACTGAACTACAGTACCGGACAATTCAAAACCCCGTTTTTCAGTGGATTTTGATCATTTTCAGGAGTCTAAAGCTCGGTTGTCAAGCTCACTTCAGGAGATTGTCAAACATACTTAGATAAAAAACTGTGCACTTACAGAAGTTTGCAAAATTCCTAATTTTTCAGCTATCTCCAATATCTGGAATAAACCAGTTTTTTTTTCACGTTCAATGCAAATACGGGCCAAAAATGGGTGTATCCCTGAAATGGGCGAATAGCTGCAAAACTAGGAATTTAGAAAAGTTTCGGCGAATGCAAAATTTCCAATTCAGGTCTATTTTACACCCTCCAAAATTTTGTTAGTGATCGGACATTTGACAGACAAGCTCCAGACTCCTGAAAATGGTCAAAATGACGAAAAATGAACCGAAAAATACGTTTTTGTGTATATCTTATGCATTTAATCGGATAGTGTATTTATTAGGATTTATTACAGGATTTCTGTACAAAATCATGTCTTGATTGAAATAAGGCATTCTCAAGATGAGATTAGAAATTTTCAAAAACTCAGAACTCTACTTTTCCCAAAATTTCTATTAATCCAACACCATTCCTTATTTTACAGACACCCTCCTAATGAAACTAGATGATGACACCAACTGGTTCACCGTTCTCTACTTCCCAACTAGCGTGGACTACTACAACGTTCGTATGACCCTGTGCAGAACCATCAGATCCGTTTTCATCATCACCAAGTTCGATAAAAACGAACCGCCGAAAATCTACGATCCCGATTTCCCAAAACTATACGACTCGAAAAAACTGACCAA</canonical>
            <polymorphic>ACATGAATCAACAGAAAAACACAGTCAAAACGAGTGCTACAGTAGTTTAGTGTTACTGGAAATCTGGCAAACAATGACAGCTTTGGACAGGTTTTTTCCAGGAAATTTCTCCTGGAAATTAACTTTGAACGCGGCTTTTACTAAGGCATTAGGTTAAGTTTTTGGGGTCCGGTGTAAATCGAAAACTCACAACTGAACTACAGTACCGGACAATTCAAAACCCCGTTTTTCAGTGGATTTTGATCATTTTCAGGAGTCTAAAGCTCGGTTGTCAAGCTCACTTCAGGAGATTGTCAAACATACTTAGATAAAAAACTGTGCACTTACAGAAGTTTGCAAAATTCCTAATTTTTCAGCTATCTCCAATATCTGGAATAAACCAGTTTTTTTTTCACGTTCAATGCAAATACGGGCCAAAAATGGGTGTATCCCTGAAATGGGCGAATAGCTGCAAAACTAGGAATTTAGAAAAGTTTCGGCGAATGCAAAATTTCCAATTYAGGTCTATTTTACACCCTCCAAAATTTTGTTAGTGATCGGACATTTGACAGACAAGCTCCAGACTCCTGAAAATGGTCAAAATGACGAAAAATGAACCGAAAAATACGTTTTTGTGTATATCTTATGCATTTAATCGGATAGTGTATTTATTAGGATTTATTACAGGATTTCTGTACAAAATCATGTCTTGATTGAAATAAGGCATTCTCAAGATGAGATTAGAAATTTTCAAAAACTCAGAACTCTACTTTTCCCAAAATTTCTATTAATCCAACACCATTCCTTATTTTACAGACACCCTCCTAATGAAACTAGATGATGACACCAACTGGTTCACCGTTCTCTACTTCCCAACTAGCGTGGACTACTACAACGTTCGTATGACCCTGTGCAGAACCATCAGATCCGTTTTCATCATCACCAAGTTCGATAAAAACGAACCGCCGAAAATCTACGATCCCGATTTCCCAAAACTATACGACTCGAAAAAACTGACCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGAAAACTCACAACTGAACT</pcr_primer_p1>
		<pcr_primer_p2>CCTAATAAATACACTATCCGATTAAA</pcr_primer_p2>
		<pcr_amplicon_size>478</pcr_amplicon_size>
		<canonical_amplicon>ATCGAAAACTCACAACTGAACTACAGTACCGGACAATTCAAAACCCCGTTTTTCAGTGGATTTTGATCATTTTCAGGAGTCTAAAGCTCGGTTGTCAAGCTCACTTCAGGAGATTGTCAAACATACTTAGATAAAAAACTGTGCACTTACAGAAGTTTGCAAAATTCCTAATTTTTCAGCTATCTCCAATATCTGGAATAAACCAGTTTTTTTTTCACGTTCAATGCAAATACGGGCCAAAAATGGGTGTATCCCTGAAATGGGCGAATAGCTGCAAAACTAGGAATTTAGAAAAGTTTCGGCGAATGCAAAATTTCCAATTCAGGTCTATTTTACACCCTCCAAAATTTTGTTAGTGATCGGACATTTGACAGACAAGCTCCAGACTCCTGAAAATGGTCAAAATGACGAAAAATGAACCGAAAAATACGTTTTTGTGTATATCTTATGCATTTAATCGGATAGTGTATTTATTAGG</canonical_amplicon>
		<polymorphic_amplicon>ATCGAAAACTCACAACTGAACTACAGTACCGGACAATTCAAAACCCCGTTTTTCAGTGGATTTTGATCATTTTCAGGAGTCTAAAGCTCGGTTGTCAAGCTCACTTCAGGAGATTGTCAAACATACTTAGATAAAAAACTGTGCACTTACAGAAGTTTGCAAAATTCCTAATTTTTCAGCTATCTCCAATATCTGGAATAAACCAGTTTTTTTTTCACGTTCAATGCAAATACGGGCCAAAAATGGGTGTATCCCTGAAATGGGCGAATAGCTGCAAAACTAGGAATTTAGAAAAGTTTCGGCGAATGCAAAATTTCCAATTYAGGTCTATTTTACACCCTCCAAAATTTTGTTAGTGATCGGACATTTGACAGACAAGCTCCAGACTCCTGAAAATGGTCAAAATGACGAAAAATGAACCGAAAAATACGTTTTTGTGTATATCTTATGCATTTAATCGGATAGTGTATTTATTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36077</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>228704</contig_pos>
        <strand>+</strand>
        <context>TTTCCGAATT[C/T]TAATTGAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGTTATTGCTTCATGGTAACCGAATGCTCCTCTCCCTTTTTTCCGAATT</left_flank>
        <right_flank>TAATTGAAATTCCGTGCGTTTCAGAGATAATAGAGACGAATTCTGAAGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTGTTTCCTCTATAATTCCCCTGATTCCAGGTTCACTAACCGAGTACCTGTACCTGACAACGGTGCGTGAGTTGGTTTGTGCATGTGTCAATCTCTCTCATCGTCCAATATCACGTATATAAAGCATGGACCATTCCTTTTTATCTGTTCCTTCCACTTGAAAAATTCCTCATGAGCATCACGGTTATCATGTTGTCCTTGTTTTTCCCCTATTTTCCATCACTTTGTTGCATCCCATCCCCTTTGCCATCCCCCTTGTCTGTAAAATGAAGCGTTTTCGATTTTTGGTTTGGTTTCAGACGAAGAGTGAAATAGATAGAATTCTACAACAACCAGCAAATCAACTAGAAGGTCTTCAGAATACAAAACTCGCACTTCTACCTCTTCTTCTCTTCTTCCTCTTCTATTTTTTTCTCACTATTCCTTAGTTCAATCCTTTGTTTTATTTTTGTTATTGCTTCATGGTAACCGAATGCTCCTCTCCCTTTTTTCCGAATTCTAATTGAAATTCCGTGCGTTTCAGAGATAATAGAGACGAATTCTGAAGCGTTGGCGGTGAAAACGAAAGCATCCGCTGCCGCCCTCCCATCATTTATTGCATTTCTCAGCATCGTCACTGCTCTCTTGTTCGGTGTTTCGTTTTATTATTAATAATATCAATAATAATAAAATACAATTCTGACACAGTATTTTTTTGTTTCCCATGATTTTTCTCTTTTTGCAACTTTTCAAAGTCTATTACGAGGTTTTATATTTAAATAAAGTGAAATTGAATATTCAAAAGTAGTGAGAAATTCCGGCTAAGACGATTAAGGATATTATGTGGGTGTTCAAGGGTGGTAGTGGTGTATAACACAGACAATATGGGCCCGATGCAGAGTGTCAGGGTCATTTTTGTCTTATCGAGTCTCATCATTAGTTAGTATGAGGCTATGTCGGGGTTTTTTTGTCGTTTACGACCATTCAGGAAGACGTGTCATCGATTTTTTCAAACATTTC</canonical>
            <polymorphic>ACTGTTTCCTCTATAATTCCCCTGATTCCAGGTTCACTAACCGAGTACCTGTACCTGACAACGGTGCGTGAGTTGGTTTGTGCATGTGTCAATCTCTCTCATCGTCCAATATCACGTATATAAAGCATGGACCATTCCTTTTTATCTGTTCCTTCCACTTGAAAAATTCCTCATGAGCATCACGGTTATCATGTTGTCCTTGTTTTTCCCCTATTTTCCATCACTTTGTTGCATCCCATCCCCTTTGCCATCCCCCTTGTCTGTAAAATGAAGCGTTTTCGATTTTTGGTTTGGTTTCAGACGAAGAGTGAAATAGATAGAATTCTACAACAACCAGCAAATCAACTAGAAGGTCTTCAGAATACAAAACTCGCACTTCTACCTCTTCTTCTCTTCTTCCTCTTCTATTTTTTTCTCACTATTCCTTAGTTCAATCCTTTGTTTTATTTTTGTTATTGCTTCATGGTAACCGAATGCTCCTCTCCCTTTTTTCCGAATTYTAATTGAAATTCCGTGCGTTTCAGAGATAATAGAGACGAATTCTGAAGCGTTGGCGGTGAAAACGAAAGCATCCGCTGCCGCCCTCCCATCATTTATTGCATTTCTCAGCATCGTCACTGCTCTCTTGTTCGGTGTTTCGTTTTATTATTAATAATATCAATAATAATAAAATACAATTCTGACACAGTATTTTTTTGTTTCCCATGATTTTTCTCTTTTTGCAACTTTTCAAAGTCTATTACGAGGTTTTATATTTAAATAAAGTGAAATTGAATATTCAAAAGTAGTGAGAAATTCCGGCTAAGACGATTAAGGATATTATGTGGGTGTTCAAGGGTGGTAGTGGTGTATAACACAGACAATATGGGCCCGATGCAGAGTGTCAGGGTCATTTTTGTCTTATCGAGTCTCATCATTAGTTAGTATGAGGCTATGTCGGGGTTTTTTTGTCGTTTACGACCATTCAGGAAGACGTGTCATCGATTTTTTCAAACATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>255 207 175 164 156 31 12</canonical_bands>
                <polymorphic_bands>255 207 187 164 156 31</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>462 320 175 43</canonical_bands>
                <polymorphic_bands>462 320 218</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGGTCTTCAGAATACAAAACTC</pcr_primer_p1>
		<pcr_primer_p2>CTGAGAAATGCAATAAATGATG</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>GAAGGTCTTCAGAATACAAAACTCGCACTTCTACCTCTTCTTCTCTTCTTCCTCTTCTATTTTTTTCTCACTATTCCTTAGTTCAATCCTTTGTTTTATTTTTGTTATTGCTTCATGGTAACCGAATGCTCCTCTCCCTTTTTTCCGAATTCTAATTGAAATTCCGTGCGTTTCAGAGATAATAGAGACGAATTCTGAAGCGTTGGCGGTGAAAACGAAAGCATCCGCTGCCGCCCTCCCATCATTTATTGCATTTCTCAG</canonical_amplicon>
		<polymorphic_amplicon>GAAGGTCTTCAGAATACAAAACTCGCACTTCTACCTCTTCTTCTCTTCTTCCTCTTCTATTTTTTTCTCACTATTCCTTAGTTCAATCCTTTGTTTTATTTTTGTTATTGCTTCATGGTAACCGAATGCTCCTCTCCCTTTTTTCCGAATTYTAATTGAAATTCCGTGCGTTTCAGAGATAATAGAGACGAATTCTGAAGCGTTGGCGGTGAAAACGAAAGCATCCGCTGCCGCCCTCCCATCATTTATTGCATTTCTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36078</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>228839</contig_pos>
        <strand>+</strand>
        <context>CTTGTTCGGT[G/T]TTTWGtttta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCCCATCATTTATTGCATTTCTCAGCATCGTCACTGCTCTCTTGTTCGGT</left_flank>
        <right_flank>TTTCGTTTTATTATTAATAATATCAATAATAATAAAATACAATTCTGACA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTTTTTATCTGTTCCTTCCACTTGAAAAATTCCTCATGAGCATCACGGTTATCATGTTGTCCTTGTTTTTCCCCTATTTTCCATCACTTTGTTGCATCCCATCCCCTTTGCCATCCCCCTTGTCTGTAAAATGAAGCGTTTTCGATTTTTGGTTTGGTTTCAGACGAAGAGTGAAATAGATAGAATTCTACAACAACCAGCAAATCAACTAGAAGGTCTTCAGAATACAAAACTCGCACTTCTACCTCTTCTTCTCTTCTTCCTCTTCTATTTTTTTCTCACTATTCCTTAGTTCAATCCTTTGTTTTATTTTTGTTATTGCTTCATGGTAACCGAATGCTCCTCTCCCTTTTTTCCGAATTCTAATTGAAATTCCGTGCGTTTCAGAGATAATAGAGACGAATTCTGAAGCGTTGGCGGTGAAAACGAAAGCATCCGCTGCCGCCCTCCCATCATTTATTGCATTTCTCAGCATCGTCACTGCTCTCTTGTTCGGTGTTTCGTTTTATTATTAATAATATCAATAATAATAAAATACAATTCTGACACAGTATTTTTTTGTTTCCCATGATTTTTCTCTTTTTGCAACTTTTCAAAGTCTATTACGAGGTTTTATATTTAAATAAAGTGAAATTGAATATTCAAAAGTAGTGAGAAATTCCGGCTAAGACGATTAAGGATATTATGTGGGTGTTCAAGGGTGGTAGTGGTGTATAACACAGACAATATGGGCCCGATGCAGAGTGTCAGGGTCATTTTTGTCTTATCGAGTCTCATCATTAGTTAGTATGAGGCTATGTCGGGGTTTTTTTGTCGTTTACGACCATTCAGGAAGACGTGTCATCGATTTTTTCAAACATTTCCCCTTAAATTTACCCCGTTCAGTTATGTTATCTTGGCTGTTCCGCTCATTTTTGCAATTTTCCAGTAAAAATATACCTTTTTCAAATTAGTCTAAAATTGTAAAAACTCCCAAAAAATTTGAAAAATCCAGGAAA</canonical>
            <polymorphic>TCCTTTTTATCTGTTCCTTCCACTTGAAAAATTCCTCATGAGCATCACGGTTATCATGTTGTCCTTGTTTTTCCCCTATTTTCCATCACTTTGTTGCATCCCATCCCCTTTGCCATCCCCCTTGTCTGTAAAATGAAGCGTTTTCGATTTTTGGTTTGGTTTCAGACGAAGAGTGAAATAGATAGAATTCTACAACAACCAGCAAATCAACTAGAAGGTCTTCAGAATACAAAACTCGCACTTCTACCTCTTCTTCTCTTCTTCCTCTTCTATTTTTTTCTCACTATTCCTTAGTTCAATCCTTTGTTTTATTTTTGTTATTGCTTCATGGTAACCGAATGCTCCTCTCCCTTTTTTCCGAATTCTAATTGAAATTCCGTGCGTTTCAGAGATAATAGAGACGAATTCTGAAGCGTTGGCGGTGAAAACGAAAGCATCCGCTGCCGCCCTCCCATCATTTATTGCATTTCTCAGCATCGTCACTGCTCTCTTGTTCGGTKTTTCGTTTTATTATTAATAATATCAATAATAATAAAATACAATTCTGACACAGTATTTTTTTGTTTCCCATGATTTTTCTCTTTTTGCAACTTTTCAAAGTCTATTACGAGGTTTTATATTTAAATAAAGTGAAATTGAATATTCAAAAGTAGTGAGAAATTCCGGCTAAGACGATTAAGGATATTATGTGGGTGTTCAAGGGTGGTAGTGGTGTATAACACAGACAATATGGGCCCGATGCAGAGTGTCAGGGTCATTTTTGTCTTATCGAGTCTCATCATTAGTTAGTATGAGGCTATGTCGGGGTTTTTTTGTCGTTTACGACCATTCAGGAAGACGTGTCATCGATTTTTTCAAACATTTCCCCTTAAATTTACCCCGTTCAGTTATGTTATCTTGGCTGTTCCGCTCATTTTTGCAATTTTCCAGTAAAAATATACCTTTTTCAAATTAGTCTAAAATTGTAAAAACTCCCAAAAAATTTGAAAAATCCAGGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>158 98 94 87 82 65 58 50 43 43 41 36 27 25 23 22 18 10 7 6 4 3</canonical_bands>
                <polymorphic_bands>158 98 94 87 82 68 65 58 43 43 41 36 27 25 23 22 10 7 6 4 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCCATCATTTATTGCATTT</pcr_primer_p1>
		<pcr_primer_p2>TGAACACCCACATAATATCCTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCCCATCATTTATTGCATTTCTCAGCATCGTCACTGCTCTCTTGTTCGGTGTTTCGTTTTATTATTAATAATATCAATAATAATAAAATACAATTCTGACACAGTATTTTTTTGTTTCCCATGATTTTTCTCTTTTTGCAACTTTTCAAAGTCTATTACGAGGTTTTATATTTAAATAAAGTGAAATTGAATATTCAAAAGTAGTGAGAAATTCCGGCTAAGACGATTAAGGATATTATGTGGGTGTTCA</canonical_amplicon>
		<polymorphic_amplicon>TCCCATCATTTATTGCATTTCTCAGCATCGTCACTGCTCTCTTGTTCGGTKTTTCGTTTTATTATTAATAATATCAATAATAATAAAATACAATTCTGACACAGTATTTTTTTGTTTCCCATGATTTTTCTCTTTTTGCAACTTTTCAAAGTCTATTACGAGGTTTTATATTTAAATAAAGTGAAATTGAATATTCAAAAGTAGTGAGAAATTCCGGCTAAGACGATTAAGGATATTATGTGGGTGTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36079</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>228843</contig_pos>
        <strand>+</strand>
        <context>TTCGGTKTTT[A/T]Gttttattat</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCATTTATTGCATTTCTCAGCATCGTCACTGCTCTCTTGTTCGGTGTTT</left_flank>
        <right_flank>GTTTTATTATTAATAATATCAATAATAATAAAATACAATTCTGACACAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTATCTGTTCCTTCCACTTGAAAAATTCCTCATGAGCATCACGGTTATCATGTTGTCCTTGTTTTTCCCCTATTTTCCATCACTTTGTTGCATCCCATCCCCTTTGCCATCCCCCTTGTCTGTAAAATGAAGCGTTTTCGATTTTTGGTTTGGTTTCAGACGAAGAGTGAAATAGATAGAATTCTACAACAACCAGCAAATCAACTAGAAGGTCTTCAGAATACAAAACTCGCACTTCTACCTCTTCTTCTCTTCTTCCTCTTCTATTTTTTTCTCACTATTCCTTAGTTCAATCCTTTGTTTTATTTTTGTTATTGCTTCATGGTAACCGAATGCTCCTCTCCCTTTTTTCCGAATTCTAATTGAAATTCCGTGCGTTTCAGAGATAATAGAGACGAATTCTGAAGCGTTGGCGGTGAAAACGAAAGCATCCGCTGCCGCCCTCCCATCATTTATTGCATTTCTCAGCATCGTCACTGCTCTCTTGTTCGGTGTTTCGTTTTATTATTAATAATATCAATAATAATAAAATACAATTCTGACACAGTATTTTTTTGTTTCCCATGATTTTTCTCTTTTTGCAACTTTTCAAAGTCTATTACGAGGTTTTATATTTAAATAAAGTGAAATTGAATATTCAAAAGTAGTGAGAAATTCCGGCTAAGACGATTAAGGATATTATGTGGGTGTTCAAGGGTGGTAGTGGTGTATAACACAGACAATATGGGCCCGATGCAGAGTGTCAGGGTCATTTTTGTCTTATCGAGTCTCATCATTAGTTAGTATGAGGCTATGTCGGGGTTTTTTTGTCGTTTACGACCATTCAGGAAGACGTGTCATCGATTTTTTCAAACATTTCCCCTTAAATTTACCCCGTTCAGTTATGTTATCTTGGCTGTTCCGCTCATTTTTGCAATTTTCCAGTAAAAATATACCTTTTTCAAATTAGTCTAAAATTGTAAAAACTCCCAAAAAATTTGAAAAATCCAGGAAAATTG</canonical>
            <polymorphic>TTTTATCTGTTCCTTCCACTTGAAAAATTCCTCATGAGCATCACGGTTATCATGTTGTCCTTGTTTTTCCCCTATTTTCCATCACTTTGTTGCATCCCATCCCCTTTGCCATCCCCCTTGTCTGTAAAATGAAGCGTTTTCGATTTTTGGTTTGGTTTCAGACGAAGAGTGAAATAGATAGAATTCTACAACAACCAGCAAATCAACTAGAAGGTCTTCAGAATACAAAACTCGCACTTCTACCTCTTCTTCTCTTCTTCCTCTTCTATTTTTTTCTCACTATTCCTTAGTTCAATCCTTTGTTTTATTTTTGTTATTGCTTCATGGTAACCGAATGCTCCTCTCCCTTTTTTCCGAATTCTAATTGAAATTCCGTGCGTTTCAGAGATAATAGAGACGAATTCTGAAGCGTTGGCGGTGAAAACGAAAGCATCCGCTGCCGCCCTCCCATCATTTATTGCATTTCTCAGCATCGTCACTGCTCTCTTGTTCGGTGTTTWGTTTTATTATTAATAATATCAATAATAATAAAATACAATTCTGACACAGTATTTTTTTGTTTCCCATGATTTTTCTCTTTTTGCAACTTTTCAAAGTCTATTACGAGGTTTTATATTTAAATAAAGTGAAATTGAATATTCAAAAGTAGTGAGAAATTCCGGCTAAGACGATTAAGGATATTATGTGGGTGTTCAAGGGTGGTAGTGGTGTATAACACAGACAATATGGGCCCGATGCAGAGTGTCAGGGTCATTTTTGTCTTATCGAGTCTCATCATTAGTTAGTATGAGGCTATGTCGGGGTTTTTTTGTCGTTTACGACCATTCAGGAAGACGTGTCATCGATTTTTTCAAACATTTCCCCTTAAATTTACCCCGTTCAGTTATGTTATCTTGGCTGTTCCGCTCATTTTTGCAATTTTCCAGTAAAAATATACCTTTTTCAAATTAGTCTAAAATTGTAAAAACTCCCAAAAAATTTGAAAAATCCAGGAAAATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCATTTATTGCATTTCTCAG</pcr_primer_p1>
		<pcr_primer_p2>TGAACACCCACATAATATCCTTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CATCATTTATTGCATTTCTCAGCATCGTCACTGCTCTCTTGTTCGGTGTTTCGTTTTATTATTAATAATATCAATAATAATAAAATACAATTCTGACACAGTATTTTTTTGTTTCCCATGATTTTTCTCTTTTTGCAACTTTTCAAAGTCTATTACGAGGTTTTATATTTAAATAAAGTGAAATTGAATATTCAAAAGTAGTGAGAAATTCCGGCTAAGACGATTAAGGATATTATGTGGGTGTTCA</canonical_amplicon>
		<polymorphic_amplicon>CATCATTTATTGCATTTCTCAGCATCGTCACTGCTCTCTTGTTCGGTGTTTWGTTTTATTATTAATAATATCAATAATAATAAAATACAATTCTGACACAGTATTTTTTTGTTTCCCATGATTTTTCTCTTTTTGCAACTTTTCAAAGTCTATTACGAGGTTTTATATTTAAATAAAGTGAAATTGAATATTCAAAAGTAGTGAGAAATTCCGGCTAAGACGATTAAGGATATTATGTGGGTGTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36080</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>228879</contig_pos>
        <strand>+</strand>
        <context>taataaaata[A/C]AATTCTGACA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTGTTCGGTGTTTCGTTTTATTATTAATAATATCAATAATAATAAAATA</left_flank>
        <right_flank>AATTCTGACACAGTATTTTTTTGTTTCCCATGATTTTTCTCTTTTTGCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCATCACGGTTATCATGTTGTCCTTGTTTTTCCCCTATTTTCCATCACTTTGTTGCATCCCATCCCCTTTGCCATCCCCCTTGTCTGTAAAATGAAGCGTTTTCGATTTTTGGTTTGGTTTCAGACGAAGAGTGAAATAGATAGAATTCTACAACAACCAGCAAATCAACTAGAAGGTCTTCAGAATACAAAACTCGCACTTCTACCTCTTCTTCTCTTCTTCCTCTTCTATTTTTTTCTCACTATTCCTTAGTTCAATCCTTTGTTTTATTTTTGTTATTGCTTCATGGTAACCGAATGCTCCTCTCCCTTTTTTCCGAATTCTAATTGAAATTCCGTGCGTTTCAGAGATAATAGAGACGAATTCTGAAGCGTTGGCGGTGAAAACGAAAGCATCCGCTGCCGCCCTCCCATCATTTATTGCATTTCTCAGCATCGTCACTGCTCTCTTGTTCGGTGTTTCGTTTTATTATTAATAATATCAATAATAATAAAATACAATTCTGACACAGTATTTTTTTGTTTCCCATGATTTTTCTCTTTTTGCAACTTTTCAAAGTCTATTACGAGGTTTTATATTTAAATAAAGTGAAATTGAATATTCAAAAGTAGTGAGAAATTCCGGCTAAGACGATTAAGGATATTATGTGGGTGTTCAAGGGTGGTAGTGGTGTATAACACAGACAATATGGGCCCGATGCAGAGTGTCAGGGTCATTTTTGTCTTATCGAGTCTCATCATTAGTTAGTATGAGGCTATGTCGGGGTTTTTTTGTCGTTTACGACCATTCAGGAAGACGTGTCATCGATTTTTTCAAACATTTCCCCTTAAATTTACCCCGTTCAGTTATGTTATCTTGGCTGTTCCGCTCATTTTTGCAATTTTCCAGTAAAAATATACCTTTTTCAAATTAGTCTAAAATTGTAAAAACTCCCAAAAAATTTGAAAAATCCAGGAAAATTGATGGAAAATAACTGTTCAAATTGACTTGTTTCTTTA</canonical>
            <polymorphic>AGCATCACGGTTATCATGTTGTCCTTGTTTTTCCCCTATTTTCCATCACTTTGTTGCATCCCATCCCCTTTGCCATCCCCCTTGTCTGTAAAATGAAGCGTTTTCGATTTTTGGTTTGGTTTCAGACGAAGAGTGAAATAGATAGAATTCTACAACAACCAGCAAATCAACTAGAAGGTCTTCAGAATACAAAACTCGCACTTCTACCTCTTCTTCTCTTCTTCCTCTTCTATTTTTTTCTCACTATTCCTTAGTTCAATCCTTTGTTTTATTTTTGTTATTGCTTCATGGTAACCGAATGCTCCTCTCCCTTTTTTCCGAATTCTAATTGAAATTCCGTGCGTTTCAGAGATAATAGAGACGAATTCTGAAGCGTTGGCGGTGAAAACGAAAGCATCCGCTGCCGCCCTCCCATCATTTATTGCATTTCTCAGCATCGTCACTGCTCTCTTGTTCGGTGTTTCGTTTTATTATTAATAATATCAATAATAATAAAATAMAATTCTGACACAGTATTTTTTTGTTTCCCATGATTTTTCTCTTTTTGCAACTTTTCAAAGTCTATTACGAGGTTTTATATTTAAATAAAGTGAAATTGAATATTCAAAAGTAGTGAGAAATTCCGGCTAAGACGATTAAGGATATTATGTGGGTGTTCAAGGGTGGTAGTGGTGTATAACACAGACAATATGGGCCCGATGCAGAGTGTCAGGGTCATTTTTGTCTTATCGAGTCTCATCATTAGTTAGTATGAGGCTATGTCGGGGTTTTTTTGTCGTTTACGACCATTCAGGAAGACGTGTCATCGATTTTTTCAAACATTTCCCCTTAAATTTACCCCGTTCAGTTATGTTATCTTGGCTGTTCCGCTCATTTTTGCAATTTTCCAGTAAAAATATACCTTTTTCAAATTAGTCTAAAATTGTAAAAACTCCCAAAAAATTTGAAAAATCCAGGAAAATTGATGGAAAATAACTGTTCAAATTGACTTGTTTCTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCATTTATTGCATTTCTCAG</pcr_primer_p1>
		<pcr_primer_p2>TGAACACCCACATAATATCCTTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CATCATTTATTGCATTTCTCAGCATCGTCACTGCTCTCTTGTTCGGTGTTTCGTTTTATTATTAATAATATCAATAATAATAAAATACAATTCTGACACAGTATTTTTTTGTTTCCCATGATTTTTCTCTTTTTGCAACTTTTCAAAGTCTATTACGAGGTTTTATATTTAAATAAAGTGAAATTGAATATTCAAAAGTAGTGAGAAATTCCGGCTAAGACGATTAAGGATATTATGTGGGTGTTCA</canonical_amplicon>
		<polymorphic_amplicon>CATCATTTATTGCATTTCTCAGCATCGTCACTGCTCTCTTGTTCGGTGTTTCGTTTTATTATTAATAATATCAATAATAATAAAATAMAATTCTGACACAGTATTTTTTTGTTTCCCATGATTTTTCTCTTTTTGCAACTTTTCAAAGTCTATTACGAGGTTTTATATTTAAATAAAGTGAAATTGAATATTCAAAAGTAGTGAGAAATTCCGGCTAAGACGATTAAGGATATTATGTGGGTGTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36081</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>228987</contig_pos>
        <strand>+</strand>
        <context>GAATATTCAA[A/G]AGTAGTGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTCTATTACGAGGTTTTATATTTAAATAAAGTGAAATTGAATATTCAA</left_flank>
        <right_flank>AGTAGTGAGAAATTCCGGCTAAGACGATTAAGGATATTATGTGGGTGTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGGTTTGGTTTCAGACGAAGAGTGAAATAGATAGAATTCTACAACAACCAGCAAATCAACTAGAAGGTCTTCAGAATACAAAACTCGCACTTCTACCTCTTCTTCTCTTCTTCCTCTTCTATTTTTTTCTCACTATTCCTTAGTTCAATCCTTTGTTTTATTTTTGTTATTGCTTCATGGTAACCGAATGCTCCTCTCCCTTTTTTCCGAATTCTAATTGAAATTCCGTGCGTTTCAGAGATAATAGAGACGAATTCTGAAGCGTTGGCGGTGAAAACGAAAGCATCCGCTGCCGCCCTCCCATCATTTATTGCATTTCTCAGCATCGTCACTGCTCTCTTGTTCGGTGTTTCGTTTTATTATTAATAATATCAATAATAATAAAATACAATTCTGACACAGTATTTTTTTGTTTCCCATGATTTTTCTCTTTTTGCAACTTTTCAAAGTCTATTACGAGGTTTTATATTTAAATAAAGTGAAATTGAATATTCAAAAGTAGTGAGAAATTCCGGCTAAGACGATTAAGGATATTATGTGGGTGTTCAAGGGTGGTAGTGGTGTATAACACAGACAATATGGGCCCGATGCAGAGTGTCAGGGTCATTTTTGTCTTATCGAGTCTCATCATTAGTTAGTATGAGGCTATGTCGGGGTTTTTTTGTCGTTTACGACCATTCAGGAAGACGTGTCATCGATTTTTTCAAACATTTCCCCTTAAATTTACCCCGTTCAGTTATGTTATCTTGGCTGTTCCGCTCATTTTTGCAATTTTCCAGTAAAAATATACCTTTTTCAAATTAGTCTAAAATTGTAAAAACTCCCAAAAAATTTGAAAAATCCAGGAAAATTGATGGAAAATAACTGTTCAAATTGACTTGTTTCTTTATATAGCTAATTAATCTTTTTGAAATATTTTTTAGAAAAATTTCAATTTCGAAATTCTCCTGAACCACTAGTCTCAATTAGATTTTTTTTCAATAATGATGCCAATTCA</canonical>
            <polymorphic>TTTTGGTTTGGTTTCAGACGAAGAGTGAAATAGATAGAATTCTACAACAACCAGCAAATCAACTAGAAGGTCTTCAGAATACAAAACTCGCACTTCTACCTCTTCTTCTCTTCTTCCTCTTCTATTTTTTTCTCACTATTCCTTAGTTCAATCCTTTGTTTTATTTTTGTTATTGCTTCATGGTAACCGAATGCTCCTCTCCCTTTTTTCCGAATTCTAATTGAAATTCCGTGCGTTTCAGAGATAATAGAGACGAATTCTGAAGCGTTGGCGGTGAAAACGAAAGCATCCGCTGCCGCCCTCCCATCATTTATTGCATTTCTCAGCATCGTCACTGCTCTCTTGTTCGGTGTTTCGTTTTATTATTAATAATATCAATAATAATAAAATACAATTCTGACACAGTATTTTTTTGTTTCCCATGATTTTTCTCTTTTTGCAACTTTTCAAAGTCTATTACGAGGTTTTATATTTAAATAAAGTGAAATTGAATATTCAARAGTAGTGAGAAATTCCGGCTAAGACGATTAAGGATATTATGTGGGTGTTCAAGGGTGGTAGTGGTGTATAACACAGACAATATGGGCCCGATGCAGAGTGTCAGGGTCATTTTTGTCTTATCGAGTCTCATCATTAGTTAGTATGAGGCTATGTCGGGGTTTTTTTGTCGTTTACGACCATTCAGGAAGACGTGTCATCGATTTTTTCAAACATTTCCCCTTAAATTTACCCCGTTCAGTTATGTTATCTTGGCTGTTCCGCTCATTTTTGCAATTTTCCAGTAAAAATATACCTTTTTCAAATTAGTCTAAAATTGTAAAAACTCCCAAAAAATTTGAAAAATCCAGGAAAATTGATGGAAAATAACTGTTCAAATTGACTTGTTTCTTTATATAGCTAATTAATCTTTTTGAAATATTTTTTAGAAAAATTTCAATTTCGAAATTCTCCTGAACCACTAGTCTCAATTAGATTTTTTTTCAATAATGATGCCAATTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCATTTATTGCATTTCTCAG</pcr_primer_p1>
		<pcr_primer_p2>CCTTGAACACCCACATAATATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATCATTTATTGCATTTCTCAGCATCGTCACTGCTCTCTTGTTCGGTGTTTCGTTTTATTATTAATAATATCAATAATAATAAAATACAATTCTGACACAGTATTTTTTTGTTTCCCATGATTTTTCTCTTTTTGCAACTTTTCAAAGTCTATTACGAGGTTTTATATTTAAATAAAGTGAAATTGAATATTCAAAAGTAGTGAGAAATTCCGGCTAAGACGATTAAGGATATTATGTGGGTGTTCAAGG</canonical_amplicon>
		<polymorphic_amplicon>CATCATTTATTGCATTTCTCAGCATCGTCACTGCTCTCTTGTTCGGTGTTTCGTTTTATTATTAATAATATCAATAATAATAAAATACAATTCTGACACAGTATTTTTTTGTTTCCCATGATTTTTCTCTTTTTGCAACTTTTCAAAGTCTATTACGAGGTTTTATATTTAAATAAAGTGAAATTGAATATTCAARAGTAGTGAGAAATTCCGGCTAAGACGATTAAGGATATTATGTGGGTGTTCAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36082</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>229103</contig_pos>
        <strand>+</strand>
        <context>GTCATTTTTG[A/T]CTTATCGAGW</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTATAACACAGACAATATGGGCCCGATGCAGAGTGTCAGGGTCATTTTTG</left_flank>
        <right_flank>CTTATCGAGTCTCATCATTAGTTAGTATGAGGCTATGTCGGGGTTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTTCTATTTTTTTCTCACTATTCCTTAGTTCAATCCTTTGTTTTATTTTTGTTATTGCTTCATGGTAACCGAATGCTCCTCTCCCTTTTTTCCGAATTCTAATTGAAATTCCGTGCGTTTCAGAGATAATAGAGACGAATTCTGAAGCGTTGGCGGTGAAAACGAAAGCATCCGCTGCCGCCCTCCCATCATTTATTGCATTTCTCAGCATCGTCACTGCTCTCTTGTTCGGTGTTTCGTTTTATTATTAATAATATCAATAATAATAAAATACAATTCTGACACAGTATTTTTTTGTTTCCCATGATTTTTCTCTTTTTGCAACTTTTCAAAGTCTATTACGAGGTTTTATATTTAAATAAAGTGAAATTGAATATTCAAAAGTAGTGAGAAATTCCGGCTAAGACGATTAAGGATATTATGTGGGTGTTCAAGGGTGGTAGTGGTGTATAACACAGACAATATGGGCCCGATGCAGAGTGTCAGGGTCATTTTTGTCTTATCGAGTCTCATCATTAGTTAGTATGAGGCTATGTCGGGGTTTTTTTGTCGTTTACGACCATTCAGGAAGACGTGTCATCGATTTTTTCAAACATTTCCCCTTAAATTTACCCCGTTCAGTTATGTTATCTTGGCTGTTCCGCTCATTTTTGCAATTTTCCAGTAAAAATATACCTTTTTCAAATTAGTCTAAAATTGTAAAAACTCCCAAAAAATTTGAAAAATCCAGGAAAATTGATGGAAAATAACTGTTCAAATTGACTTGTTTCTTTATATAGCTAATTAATCTTTTTGAAATATTTTTTAGAAAAATTTCAATTTCGAAATTCTCCTGAACCACTAGTCTCAATTAGATTTTTTTTCAATAATGATGCCAATTCATTTTTATTCGAAACCAGCTAGCTCGTGCGCTTTCGGCGCAATTTGATCTACTCACTGGTTCGATACCTTTTCAAATATAGGGAATCTGTAAATTGCTGAGAATAAGGAGTTCTTTG</canonical>
            <polymorphic>CTCTTCTATTTTTTTCTCACTATTCCTTAGTTCAATCCTTTGTTTTATTTTTGTTATTGCTTCATGGTAACCGAATGCTCCTCTCCCTTTTTTCCGAATTCTAATTGAAATTCCGTGCGTTTCAGAGATAATAGAGACGAATTCTGAAGCGTTGGCGGTGAAAACGAAAGCATCCGCTGCCGCCCTCCCATCATTTATTGCATTTCTCAGCATCGTCACTGCTCTCTTGTTCGGTGTTTCGTTTTATTATTAATAATATCAATAATAATAAAATACAATTCTGACACAGTATTTTTTTGTTTCCCATGATTTTTCTCTTTTTGCAACTTTTCAAAGTCTATTACGAGGTTTTATATTTAAATAAAGTGAAATTGAATATTCAAAAGTAGTGAGAAATTCCGGCTAAGACGATTAAGGATATTATGTGGGTGTTCAAGGGTGGTAGTGGTGTATAACACAGACAATATGGGCCCGATGCAGAGTGTCAGGGTCATTTTTGWCTTATCGAGTCTCATCATTAGTTAGTATGAGGCTATGTCGGGGTTTTTTTGTCGTTTACGACCATTCAGGAAGACGTGTCATCGATTTTTTCAAACATTTCCCCTTAAATTTACCCCGTTCAGTTATGTTATCTTGGCTGTTCCGCTCATTTTTGCAATTTTCCAGTAAAAATATACCTTTTTCAAATTAGTCTAAAATTGTAAAAACTCCCAAAAAATTTGAAAAATCCAGGAAAATTGATGGAAAATAACTGTTCAAATTGACTTGTTTCTTTATATAGCTAATTAATCTTTTTGAAATATTTTTTAGAAAAATTTCAATTTCGAAATTCTCCTGAACCACTAGTCTCAATTAGATTTTTTTTCAATAATGATGCCAATTCATTTTTATTCGAAACCAGCTAGCTCGTGCGCTTTCGGCGCAATTTGATCTACTCACTGGTTCGATACCTTTTCAAATATAGGGAATCTGTAAATTGCTGAGAATAAGGAGTTCTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGGTAGTGGTGTATAACACAG</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAAAAGGTATATTTTTACTGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTGGTAGTGGTGTATAACACAGACAATATGGGCCCGATGCAGAGTGTCAGGGTCATTTTTGTCTTATCGAGTCTCATCATTAGTTAGTATGAGGCTATGTCGGGGTTTTTTTGTCGTTTACGACCATTCAGGAAGACGTGTCATCGATTTTTTCAAACATTTCCCCTTAAATTTACCCCGTTCAGTTATGTTATCTTGGCTGTTCCGCTCATTTTTGCAATTTTCCAGTAAAAATATACCTTTTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTGGTAGTGGTGTATAACACAGACAATATGGGCCCGATGCAGAGTGTCAGGGTCATTTTTGWCTTATCGAGTCTCATCATTAGTTAGTATGAGGCTATGTCGGGGTTTTTTTGTCGTTTACGACCATTCAGGAAGACGTGTCATCGATTTTTTCAAACATTTCCCCTTAAATTTACCCCGTTCAGTTATGTTATCTTGGCTGTTCCGCTCATTTTTGCAATTTTCCAGTAAAAATATACCTTTTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36083</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>229113</contig_pos>
        <strand>+</strand>
        <context>WCTTATCGAG[A/T]CTCATCATTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACAATATGGGCCCGATGCAGAGTGTCAGGGTCATTTTTGTCTTATCGAG</left_flank>
        <right_flank>CTCATCATTAGTTAGTATGAGGCTATGTCGGGGTTTTTTTGTCGTTTACG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTCTCACTATTCCTTAGTTCAATCCTTTGTTTTATTTTTGTTATTGCTTCATGGTAACCGAATGCTCCTCTCCCTTTTTTCCGAATTCTAATTGAAATTCCGTGCGTTTCAGAGATAATAGAGACGAATTCTGAAGCGTTGGCGGTGAAAACGAAAGCATCCGCTGCCGCCCTCCCATCATTTATTGCATTTCTCAGCATCGTCACTGCTCTCTTGTTCGGTGTTTCGTTTTATTATTAATAATATCAATAATAATAAAATACAATTCTGACACAGTATTTTTTTGTTTCCCATGATTTTTCTCTTTTTGCAACTTTTCAAAGTCTATTACGAGGTTTTATATTTAAATAAAGTGAAATTGAATATTCAAAAGTAGTGAGAAATTCCGGCTAAGACGATTAAGGATATTATGTGGGTGTTCAAGGGTGGTAGTGGTGTATAACACAGACAATATGGGCCCGATGCAGAGTGTCAGGGTCATTTTTGTCTTATCGAGTCTCATCATTAGTTAGTATGAGGCTATGTCGGGGTTTTTTTGTCGTTTACGACCATTCAGGAAGACGTGTCATCGATTTTTTCAAACATTTCCCCTTAAATTTACCCCGTTCAGTTATGTTATCTTGGCTGTTCCGCTCATTTTTGCAATTTTCCAGTAAAAATATACCTTTTTCAAATTAGTCTAAAATTGTAAAAACTCCCAAAAAATTTGAAAAATCCAGGAAAATTGATGGAAAATAACTGTTCAAATTGACTTGTTTCTTTATATAGCTAATTAATCTTTTTGAAATATTTTTTAGAAAAATTTCAATTTCGAAATTCTCCTGAACCACTAGTCTCAATTAGATTTTTTTTCAATAATGATGCCAATTCATTTTTATTCGAAACCAGCTAGCTCGTGCGCTTTCGGCGCAATTTGATCTACTCACTGGTTCGATACCTTTTCAAATATAGGGAATCTGTAAATTGCTGAGAATAAGGAGTTCTTTGTAATGACCCT</canonical>
            <polymorphic>TTTTTCTCACTATTCCTTAGTTCAATCCTTTGTTTTATTTTTGTTATTGCTTCATGGTAACCGAATGCTCCTCTCCCTTTTTTCCGAATTCTAATTGAAATTCCGTGCGTTTCAGAGATAATAGAGACGAATTCTGAAGCGTTGGCGGTGAAAACGAAAGCATCCGCTGCCGCCCTCCCATCATTTATTGCATTTCTCAGCATCGTCACTGCTCTCTTGTTCGGTGTTTCGTTTTATTATTAATAATATCAATAATAATAAAATACAATTCTGACACAGTATTTTTTTGTTTCCCATGATTTTTCTCTTTTTGCAACTTTTCAAAGTCTATTACGAGGTTTTATATTTAAATAAAGTGAAATTGAATATTCAAAAGTAGTGAGAAATTCCGGCTAAGACGATTAAGGATATTATGTGGGTGTTCAAGGGTGGTAGTGGTGTATAACACAGACAATATGGGCCCGATGCAGAGTGTCAGGGTCATTTTTGTCTTATCGAGWCTCATCATTAGTTAGTATGAGGCTATGTCGGGGTTTTTTTGTCGTTTACGACCATTCAGGAAGACGTGTCATCGATTTTTTCAAACATTTCCCCTTAAATTTACCCCGTTCAGTTATGTTATCTTGGCTGTTCCGCTCATTTTTGCAATTTTCCAGTAAAAATATACCTTTTTCAAATTAGTCTAAAATTGTAAAAACTCCCAAAAAATTTGAAAAATCCAGGAAAATTGATGGAAAATAACTGTTCAAATTGACTTGTTTCTTTATATAGCTAATTAATCTTTTTGAAATATTTTTTAGAAAAATTTCAATTTCGAAATTCTCCTGAACCACTAGTCTCAATTAGATTTTTTTTCAATAATGATGCCAATTCATTTTTATTCGAAACCAGCTAGCTCGTGCGCTTTCGGCGCAATTTGATCTACTCACTGGTTCGATACCTTTTCAAATATAGGGAATCTGTAAATTGCTGAGAATAAGGAGTTCTTTGTAATGACCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>497 459 44</canonical_bands>
                <polymorphic_bands>956 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGGTAGTGGTGTATAACACAG</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAAAAGGTATATTTTTACTGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTGGTAGTGGTGTATAACACAGACAATATGGGCCCGATGCAGAGTGTCAGGGTCATTTTTGTCTTATCGAGTCTCATCATTAGTTAGTATGAGGCTATGTCGGGGTTTTTTTGTCGTTTACGACCATTCAGGAAGACGTGTCATCGATTTTTTCAAACATTTCCCCTTAAATTTACCCCGTTCAGTTATGTTATCTTGGCTGTTCCGCTCATTTTTGCAATTTTCCAGTAAAAATATACCTTTTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTGGTAGTGGTGTATAACACAGACAATATGGGCCCGATGCAGAGTGTCAGGGTCATTTTTGTCTTATCGAGWCTCATCATTAGTTAGTATGAGGCTATGTCGGGGTTTTTTTGTCGTTTACGACCATTCAGGAAGACGTGTCATCGATTTTTTCAAACATTTCCCCTTAAATTTACCCCGTTCAGTTATGTTATCTTGGCTGTTCCGCTCATTTTTGCAATTTTCCAGTAAAAATATACCTTTTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36084</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>229155</contig_pos>
        <strand>+</strand>
        <context>GGTTTTTTTG[A/T]CGTTTACGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTATCGAGTCTCATCATTAGTTAGTATGAGGCTATGTCGGGGTTTTTTTG</left_flank>
        <right_flank>CGTTTACGACCATTCAGGAAGACGTGTCATCGATTTTTTCAAACATTTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTATTGCTTCATGGTAACCGAATGCTCCTCTCCCTTTTTTCCGAATTCTAATTGAAATTCCGTGCGTTTCAGAGATAATAGAGACGAATTCTGAAGCGTTGGCGGTGAAAACGAAAGCATCCGCTGCCGCCCTCCCATCATTTATTGCATTTCTCAGCATCGTCACTGCTCTCTTGTTCGGTGTTTCGTTTTATTATTAATAATATCAATAATAATAAAATACAATTCTGACACAGTATTTTTTTGTTTCCCATGATTTTTCTCTTTTTGCAACTTTTCAAAGTCTATTACGAGGTTTTATATTTAAATAAAGTGAAATTGAATATTCAAAAGTAGTGAGAAATTCCGGCTAAGACGATTAAGGATATTATGTGGGTGTTCAAGGGTGGTAGTGGTGTATAACACAGACAATATGGGCCCGATGCAGAGTGTCAGGGTCATTTTTGTCTTATCGAGTCTCATCATTAGTTAGTATGAGGCTATGTCGGGGTTTTTTTGTCGTTTACGACCATTCAGGAAGACGTGTCATCGATTTTTTCAAACATTTCCCCTTAAATTTACCCCGTTCAGTTATGTTATCTTGGCTGTTCCGCTCATTTTTGCAATTTTCCAGTAAAAATATACCTTTTTCAAATTAGTCTAAAATTGTAAAAACTCCCAAAAAATTTGAAAAATCCAGGAAAATTGATGGAAAATAACTGTTCAAATTGACTTGTTTCTTTATATAGCTAATTAATCTTTTTGAAATATTTTTTAGAAAAATTTCAATTTCGAAATTCTCCTGAACCACTAGTCTCAATTAGATTTTTTTTCAATAATGATGCCAATTCATTTTTATTCGAAACCAGCTAGCTCGTGCGCTTTCGGCGCAATTTGATCTACTCACTGGTTCGATACCTTTTCAAATATAGGGAATCTGTAAATTGCTGAGAATAAGGAGTTCTTTGTAATGACCCTCTCTCCAGTTTGTTCATACAGCTAAGCAAATTCTATAACAAA</canonical>
            <polymorphic>GTTATTGCTTCATGGTAACCGAATGCTCCTCTCCCTTTTTTCCGAATTCTAATTGAAATTCCGTGCGTTTCAGAGATAATAGAGACGAATTCTGAAGCGTTGGCGGTGAAAACGAAAGCATCCGCTGCCGCCCTCCCATCATTTATTGCATTTCTCAGCATCGTCACTGCTCTCTTGTTCGGTGTTTCGTTTTATTATTAATAATATCAATAATAATAAAATACAATTCTGACACAGTATTTTTTTGTTTCCCATGATTTTTCTCTTTTTGCAACTTTTCAAAGTCTATTACGAGGTTTTATATTTAAATAAAGTGAAATTGAATATTCAAAAGTAGTGAGAAATTCCGGCTAAGACGATTAAGGATATTATGTGGGTGTTCAAGGGTGGTAGTGGTGTATAACACAGACAATATGGGCCCGATGCAGAGTGTCAGGGTCATTTTTGTCTTATCGAGTCTCATCATTAGTTAGTATGAGGCTATGTCGGGGTTTTTTTGWCGTTTACGACCATTCAGGAAGACGTGTCATCGATTTTTTCAAACATTTCCCCTTAAATTTACCCCGTTCAGTTATGTTATCTTGGCTGTTCCGCTCATTTTTGCAATTTTCCAGTAAAAATATACCTTTTTCAAATTAGTCTAAAATTGTAAAAACTCCCAAAAAATTTGAAAAATCCAGGAAAATTGATGGAAAATAACTGTTCAAATTGACTTGTTTCTTTATATAGCTAATTAATCTTTTTGAAATATTTTTTAGAAAAATTTCAATTTCGAAATTCTCCTGAACCACTAGTCTCAATTAGATTTTTTTTCAATAATGATGCCAATTCATTTTTATTCGAAACCAGCTAGCTCGTGCGCTTTCGGCGCAATTTGATCTACTCACTGGTTCGATACCTTTTCAAATATAGGGAATCTGTAAATTGCTGAGAATAAGGAGTTCTTTGTAATGACCCTCTCTCCAGTTTGTTCATACAGCTAAGCAAATTCTATAACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGGTAGTGGTGTATAACACAG</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAAAAGGTATATTTTTACTGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTGGTAGTGGTGTATAACACAGACAATATGGGCCCGATGCAGAGTGTCAGGGTCATTTTTGTCTTATCGAGTCTCATCATTAGTTAGTATGAGGCTATGTCGGGGTTTTTTTGTCGTTTACGACCATTCAGGAAGACGTGTCATCGATTTTTTCAAACATTTCCCCTTAAATTTACCCCGTTCAGTTATGTTATCTTGGCTGTTCCGCTCATTTTTGCAATTTTCCAGTAAAAATATACCTTTTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTGGTAGTGGTGTATAACACAGACAATATGGGCCCGATGCAGAGTGTCAGGGTCATTTTTGTCTTATCGAGTCTCATCATTAGTTAGTATGAGGCTATGTCGGGGTTTTTTTGWCGTTTACGACCATTCAGGAAGACGTGTCATCGATTTTTTCAAACATTTCCCCTTAAATTTACCCCGTTCAGTTATGTTATCTTGGCTGTTCCGCTCATTTTTGCAATTTTCCAGTAAAAATATACCTTTTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36085</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>229170</contig_pos>
        <strand>+</strand>
        <context>TACGACCATT[C/T]AGGAAGACGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTAGTTAGTATGAGGCTATGTCGGGGTTTTTTTGTCGTTTACGACCATT</left_flank>
        <right_flank>AGGAAGACGTGTCATCGATTTTTTCAAACATTTCCCCTTAAATTTACCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACCGAATGCTCCTCTCCCTTTTTTCCGAATTCTAATTGAAATTCCGTGCGTTTCAGAGATAATAGAGACGAATTCTGAAGCGTTGGCGGTGAAAACGAAAGCATCCGCTGCCGCCCTCCCATCATTTATTGCATTTCTCAGCATCGTCACTGCTCTCTTGTTCGGTGTTTCGTTTTATTATTAATAATATCAATAATAATAAAATACAATTCTGACACAGTATTTTTTTGTTTCCCATGATTTTTCTCTTTTTGCAACTTTTCAAAGTCTATTACGAGGTTTTATATTTAAATAAAGTGAAATTGAATATTCAAAAGTAGTGAGAAATTCCGGCTAAGACGATTAAGGATATTATGTGGGTGTTCAAGGGTGGTAGTGGTGTATAACACAGACAATATGGGCCCGATGCAGAGTGTCAGGGTCATTTTTGTCTTATCGAGTCTCATCATTAGTTAGTATGAGGCTATGTCGGGGTTTTTTTGTCGTTTACGACCATTCAGGAAGACGTGTCATCGATTTTTTCAAACATTTCCCCTTAAATTTACCCCGTTCAGTTATGTTATCTTGGCTGTTCCGCTCATTTTTGCAATTTTCCAGTAAAAATATACCTTTTTCAAATTAGTCTAAAATTGTAAAAACTCCCAAAAAATTTGAAAAATCCAGGAAAATTGATGGAAAATAACTGTTCAAATTGACTTGTTTCTTTATATAGCTAATTAATCTTTTTGAAATATTTTTTAGAAAAATTTCAATTTCGAAATTCTCCTGAACCACTAGTCTCAATTAGATTTTTTTTCAATAATGATGCCAATTCATTTTTATTCGAAACCAGCTAGCTCGTGCGCTTTCGGCGCAATTTGATCTACTCACTGGTTCGATACCTTTTCAAATATAGGGAATCTGTAAATTGCTGAGAATAAGGAGTTCTTTGTAATGACCCTCTCTCCAGTTTGTTCATACAGCTAAGCAAATTCTATAACAAATTTTTTTTTTGAAAA</canonical>
            <polymorphic>TAACCGAATGCTCCTCTCCCTTTTTTCCGAATTCTAATTGAAATTCCGTGCGTTTCAGAGATAATAGAGACGAATTCTGAAGCGTTGGCGGTGAAAACGAAAGCATCCGCTGCCGCCCTCCCATCATTTATTGCATTTCTCAGCATCGTCACTGCTCTCTTGTTCGGTGTTTCGTTTTATTATTAATAATATCAATAATAATAAAATACAATTCTGACACAGTATTTTTTTGTTTCCCATGATTTTTCTCTTTTTGCAACTTTTCAAAGTCTATTACGAGGTTTTATATTTAAATAAAGTGAAATTGAATATTCAAAAGTAGTGAGAAATTCCGGCTAAGACGATTAAGGATATTATGTGGGTGTTCAAGGGTGGTAGTGGTGTATAACACAGACAATATGGGCCCGATGCAGAGTGTCAGGGTCATTTTTGTCTTATCGAGTCTCATCATTAGTTAGTATGAGGCTATGTCGGGGTTTTTTTGTCGTTTACGACCATTYAGGAAGACGTGTCATCGATTTTTTCAAACATTTCCCCTTAAATTTACCCCGTTCAGTTATGTTATCTTGGCTGTTCCGCTCATTTTTGCAATTTTCCAGTAAAAATATACCTTTTTCAAATTAGTCTAAAATTGTAAAAACTCCCAAAAAATTTGAAAAATCCAGGAAAATTGATGGAAAATAACTGTTCAAATTGACTTGTTTCTTTATATAGCTAATTAATCTTTTTGAAATATTTTTTAGAAAAATTTCAATTTCGAAATTCTCCTGAACCACTAGTCTCAATTAGATTTTTTTTCAATAATGATGCCAATTCATTTTTATTCGAAACCAGCTAGCTCGTGCGCTTTCGGCGCAATTTGATCTACTCACTGGTTCGATACCTTTTCAAATATAGGGAATCTGTAAATTGCTGAGAATAAGGAGTTCTTTGTAATGACCCTCTCTCCAGTTTGTTCATACAGCTAAGCAAATTCTATAACAAATTTTTTTTTTGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>500 267 233</canonical_bands>
                <polymorphic_bands>767 233</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGGTAGTGGTGTATAACACAG</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAAAAGGTATATTTTTACTGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGTGGTAGTGGTGTATAACACAGACAATATGGGCCCGATGCAGAGTGTCAGGGTCATTTTTGTCTTATCGAGTCTCATCATTAGTTAGTATGAGGCTATGTCGGGGTTTTTTTGTCGTTTACGACCATTCAGGAAGACGTGTCATCGATTTTTTCAAACATTTCCCCTTAAATTTACCCCGTTCAGTTATGTTATCTTGGCTGTTCCGCTCATTTTTGCAATTTTCCAGTAAAAATATACCTTTTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTGGTAGTGGTGTATAACACAGACAATATGGGCCCGATGCAGAGTGTCAGGGTCATTTTTGTCTTATCGAGTCTCATCATTAGTTAGTATGAGGCTATGTCGGGGTTTTTTTGTCGTTTACGACCATTYAGGAAGACGTGTCATCGATTTTTTCAAACATTTCCCCTTAAATTTACCCCGTTCAGTTATGTTATCTTGGCTGTTCCGCTCATTTTTGCAATTTTCCAGTAAAAATATACCTTTTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36086</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>275561</contig_pos>
        <strand></strand>
        <context>TTGTGCTaca[A/G]taccggtcga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACA</left_flank>
        <right_flank>TACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTCTCTTGTTCCTCCTGCGTCTCTCAAAGGGTACATTGTACCTTGGCTATTCTTATCATATAACACCTTTTTTGTTTGTTGGCAGCCACTTTTTTCTCATTTTTCGTATTTTTTCAGTCACACGTATCATATAACCAAACCGTATCATTTTTTTTCCAGGATGTCGTTCCCAGAAAAGTTCCAAGAAGCCTTGAAAGAGTGGGCTCCGGCACTGGTGGTCCCGATTTCGTTGTATGTAGCTTATAAGTGAGTTTTGCAGTTTGGAAATAGCAAAGTCAAGATAATTACTATTTCAGATTGCTGAATAGGATCATCCCAGGAGCTCATAATCTGCCAAAACTCGACGTCAAGAACAAAGTGGTTGTTATCACTGGAGCGAGTTCAGGTAAGAAAAGTTGGGCGACTTTAATTTAGCAAAGAAATGTTGAAAACGCGCATTAATCGAAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAATTCTACAAAATTTTCAGGACTCGGCAAAAGTCTCGCATTC</canonical>
            <polymorphic>CTTTCTCTTGTTCCTCCTGCGTCTCTCAAAGGGTACATTGTACCTTGGCTATTCTTATCATATAACACCTTTTTTGTTTGTTGGCAGCCACTTTTTTCTCATTTTTCGTATTTTTTCAGTCACACGTATCATATAACCAAACCGTATCATTTTTTTTCCAGGATGTCGTTCCCAGAAAAGTTCCAAGAAGCCTTGAAAGAGTGGGCTCCGGCACTGGTGGTCCCGATTTCGTTGTATGTAGCTTATAAGTGAGTTTTGCAGTTTGGAAATAGCAAAGTCAAGATAATTACTATTTCAGATTGCTGAATAGGATCATCCCAGGAGCTCATAATCTGCCAAAACTCGACGTCAAGAACAAAGTGGTTGTTATCACTGGAGCGAGTTCAGGTAAGAAAAGTTGGGCGACTTTAATTTAGCAAAGAAATGTTGAAAACGCGCATTAATCGAAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACARTACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAATTCTACAAAATTTTCAGGACTCGGCAAAAGTCTCGCATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTTCGAAACCAATAACG</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTTCTGTTCGTGTGGT</pcr_primer_p2>
		<pcr_amplicon_size>515</pcr_amplicon_size>
		<canonical_amplicon>AAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAAT</canonical_amplicon>
		<polymorphic_amplicon>AAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACARTACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36087</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>275626</contig_pos>
        <strand></strand>
        <context>agccattttg[A/C]ccatctgcaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTG</left_flank>
        <right_flank>CCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACCTTTTTTGTTTGTTGGCAGCCACTTTTTTCTCATTTTTCGTATTTTTTCAGTCACACGTATCATATAACCAAACCGTATCATTTTTTTTCCAGGATGTCGTTCCCAGAAAAGTTCCAAGAAGCCTTGAAAGAGTGGGCTCCGGCACTGGTGGTCCCGATTTCGTTGTATGTAGCTTATAAGTGAGTTTTGCAGTTTGGAAATAGCAAAGTCAAGATAATTACTATTTCAGATTGCTGAATAGGATCATCCCAGGAGCTCATAATCTGCCAAAACTCGACGTCAAGAACAAAGTGGTTGTTATCACTGGAGCGAGTTCAGGTAAGAAAAGTTGGGCGACTTTAATTTAGCAAAGAAATGTTGAAAACGCGCATTAATCGAAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAATTCTACAAAATTTTCAGGACTCGGCAAAAGTCTCGCATTCGAATTGTACAAACGAGGTGCCAAAGTGATTCTCTTGGCCAGAAGTACAGACAAATTGAAGGAGAT</canonical>
            <polymorphic>CACCTTTTTTGTTTGTTGGCAGCCACTTTTTTCTCATTTTTCGTATTTTTTCAGTCACACGTATCATATAACCAAACCGTATCATTTTTTTTCCAGGATGTCGTTCCCAGAAAAGTTCCAAGAAGCCTTGAAAGAGTGGGCTCCGGCACTGGTGGTCCCGATTTCGTTGTATGTAGCTTATAAGTGAGTTTTGCAGTTTGGAAATAGCAAAGTCAAGATAATTACTATTTCAGATTGCTGAATAGGATCATCCCAGGAGCTCATAATCTGCCAAAACTCGACGTCAAGAACAAAGTGGTTGTTATCACTGGAGCGAGTTCAGGTAAGAAAAGTTGGGCGACTTTAATTTAGCAAAGAAATGTTGAAAACGCGCATTAATCGAAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGMCCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAATTCTACAAAATTTTCAGGACTCGGCAAAAGTCTCGCATTCGAATTGTACAAACGAGGTGCCAAAGTGATTCTCTTGGCCAGAAGTACAGACAAATTGAAGGAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGGGTTTAAAGCTCTTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTTCTGTTCGTGTGGT</pcr_primer_p2>
		<pcr_amplicon_size>489</pcr_amplicon_size>
		<canonical_amplicon>TTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAAT</canonical_amplicon>
		<polymorphic_amplicon>TTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGMCCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36088</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>275696</contig_pos>
        <strand></strand>
        <context>ggatgtgaaa[C/T]agacctagaw</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAA</left_flank>
        <right_flank>AGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAAACCGTATCATTTTTTTTCCAGGATGTCGTTCCCAGAAAAGTTCCAAGAAGCCTTGAAAGAGTGGGCTCCGGCACTGGTGGTCCCGATTTCGTTGTATGTAGCTTATAAGTGAGTTTTGCAGTTTGGAAATAGCAAAGTCAAGATAATTACTATTTCAGATTGCTGAATAGGATCATCCCAGGAGCTCATAATCTGCCAAAACTCGACGTCAAGAACAAAGTGGTTGTTATCACTGGAGCGAGTTCAGGTAAGAAAAGTTGGGCGACTTTAATTTAGCAAAGAAATGTTGAAAACGCGCATTAATCGAAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAATTCTACAAAATTTTCAGGACTCGGCAAAAGTCTCGCATTCGAATTGTACAAACGAGGTGCCAAAGTGATTCTCTTGGCCAGAAGTACAGACAAATTGAAGGAGATCTGCAATGAGCTTAAGGAAACATTCCCCCTAAATCAGAACGAGCCAACTTATTAGTGAGTTTGTCCTCTA</canonical>
            <polymorphic>ACCAAACCGTATCATTTTTTTTCCAGGATGTCGTTCCCAGAAAAGTTCCAAGAAGCCTTGAAAGAGTGGGCTCCGGCACTGGTGGTCCCGATTTCGTTGTATGTAGCTTATAAGTGAGTTTTGCAGTTTGGAAATAGCAAAGTCAAGATAATTACTATTTCAGATTGCTGAATAGGATCATCCCAGGAGCTCATAATCTGCCAAAACTCGACGTCAAGAACAAAGTGGTTGTTATCACTGGAGCGAGTTCAGGTAAGAAAAGTTGGGCGACTTTAATTTAGCAAAGAAATGTTGAAAACGCGCATTAATCGAAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAAYAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAATTCTACAAAATTTTCAGGACTCGGCAAAAGTCTCGCATTCGAATTGTACAAACGAGGTGCCAAAGTGATTCTCTTGGCCAGAAGTACAGACAAATTGAAGGAGATCTGCAATGAGCTTAAGGAAACATTCCCCCTAAATCAGAACGAGCCAACTTATTAGTGAGTTTGTCCTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGGGTTTAAAGCTCTTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTTCTGTTCGTGTGGT</pcr_primer_p2>
		<pcr_amplicon_size>489</pcr_amplicon_size>
		<canonical_amplicon>TTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAAT</canonical_amplicon>
		<polymorphic_amplicon>TTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAAYAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36089</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>275706</contig_pos>
        <strand></strand>
        <context>yagacctaga[A/T]tggaaatttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGA</left_flank>
        <right_flank>TGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCATTTTTTTTCCAGGATGTCGTTCCCAGAAAAGTTCCAAGAAGCCTTGAAAGAGTGGGCTCCGGCACTGGTGGTCCCGATTTCGTTGTATGTAGCTTATAAGTGAGTTTTGCAGTTTGGAAATAGCAAAGTCAAGATAATTACTATTTCAGATTGCTGAATAGGATCATCCCAGGAGCTCATAATCTGCCAAAACTCGACGTCAAGAACAAAGTGGTTGTTATCACTGGAGCGAGTTCAGGTAAGAAAAGTTGGGCGACTTTAATTTAGCAAAGAAATGTTGAAAACGCGCATTAATCGAAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAATTCTACAAAATTTTCAGGACTCGGCAAAAGTCTCGCATTCGAATTGTACAAACGAGGTGCCAAAGTGATTCTCTTGGCCAGAAGTACAGACAAATTGAAGGAGATCTGCAATGAGCTTAAGGAAACATTCCCCCTAAATCAGAACGAGCCAACTTATTAGTGAGTTTGTCCTCTAATTTTGCACA</canonical>
            <polymorphic>ATCATTTTTTTTCCAGGATGTCGTTCCCAGAAAAGTTCCAAGAAGCCTTGAAAGAGTGGGCTCCGGCACTGGTGGTCCCGATTTCGTTGTATGTAGCTTATAAGTGAGTTTTGCAGTTTGGAAATAGCAAAGTCAAGATAATTACTATTTCAGATTGCTGAATAGGATCATCCCAGGAGCTCATAATCTGCCAAAACTCGACGTCAAGAACAAAGTGGTTGTTATCACTGGAGCGAGTTCAGGTAAGAAAAGTTGGGCGACTTTAATTTAGCAAAGAAATGTTGAAAACGCGCATTAATCGAAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAWTGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAATTCTACAAAATTTTCAGGACTCGGCAAAAGTCTCGCATTCGAATTGTACAAACGAGGTGCCAAAGTGATTCTCTTGGCCAGAAGTACAGACAAATTGAAGGAGATCTGCAATGAGCTTAAGGAAACATTCCCCCTAAATCAGAACGAGCCAACTTATTAGTGAGTTTGTCCTCTAATTTTGCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGGGTTTAAAGCTCTTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTTCTGTTCGTGTGGT</pcr_primer_p2>
		<pcr_amplicon_size>489</pcr_amplicon_size>
		<canonical_amplicon>TTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAAT</canonical_amplicon>
		<polymorphic_amplicon>TTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAWTGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36090</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>275724</contig_pos>
        <strand></strand>
        <context>tttgcatcaa[C/G]agaayttttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAA</left_flank>
        <right_flank>AGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCGTTCCCAGAAAAGTTCCAAGAAGCCTTGAAAGAGTGGGCTCCGGCACTGGTGGTCCCGATTTCGTTGTATGTAGCTTATAAGTGAGTTTTGCAGTTTGGAAATAGCAAAGTCAAGATAATTACTATTTCAGATTGCTGAATAGGATCATCCCAGGAGCTCATAATCTGCCAAAACTCGACGTCAAGAACAAAGTGGTTGTTATCACTGGAGCGAGTTCAGGTAAGAAAAGTTGGGCGACTTTAATTTAGCAAAGAAATGTTGAAAACGCGCATTAATCGAAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAATTCTACAAAATTTTCAGGACTCGGCAAAAGTCTCGCATTCGAATTGTACAAACGAGGTGCCAAAGTGATTCTCTTGGCCAGAAGTACAGACAAATTGAAGGAGATCTGCAATGAGCTTAAGGAAACATTCCCCCTAAATCAGAACGAGCCAACTTATTAGTGAGTTTGTCCTCTAATTTTGCACATTTCATCAGACGCTTTTT</canonical>
            <polymorphic>TGTCGTTCCCAGAAAAGTTCCAAGAAGCCTTGAAAGAGTGGGCTCCGGCACTGGTGGTCCCGATTTCGTTGTATGTAGCTTATAAGTGAGTTTTGCAGTTTGGAAATAGCAAAGTCAAGATAATTACTATTTCAGATTGCTGAATAGGATCATCCCAGGAGCTCATAATCTGCCAAAACTCGACGTCAAGAACAAAGTGGTTGTTATCACTGGAGCGAGTTCAGGTAAGAAAAGTTGGGCGACTTTAATTTAGCAAAGAAATGTTGAAAACGCGCATTAATCGAAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAASAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAATTCTACAAAATTTTCAGGACTCGGCAAAAGTCTCGCATTCGAATTGTACAAACGAGGTGCCAAAGTGATTCTCTTGGCCAGAAGTACAGACAAATTGAAGGAGATCTGCAATGAGCTTAAGGAAACATTCCCCCTAAATCAGAACGAGCCAACTTATTAGTGAGTTTGTCCTCTAATTTTGCACATTTCATCAGACGCTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGGGTTTAAAGCTCTTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTTCTGTTCGTGTGGT</pcr_primer_p2>
		<pcr_amplicon_size>489</pcr_amplicon_size>
		<canonical_amplicon>TTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAAT</canonical_amplicon>
		<polymorphic_amplicon>TTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAASAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36091</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>275729</contig_pos>
        <strand></strand>
        <context>atcaasagaa[C/T]tttttgaawa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAA</left_flank>
        <right_flank>TTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCCAGAAAAGTTCCAAGAAGCCTTGAAAGAGTGGGCTCCGGCACTGGTGGTCCCGATTTCGTTGTATGTAGCTTATAAGTGAGTTTTGCAGTTTGGAAATAGCAAAGTCAAGATAATTACTATTTCAGATTGCTGAATAGGATCATCCCAGGAGCTCATAATCTGCCAAAACTCGACGTCAAGAACAAAGTGGTTGTTATCACTGGAGCGAGTTCAGGTAAGAAAAGTTGGGCGACTTTAATTTAGCAAAGAAATGTTGAAAACGCGCATTAATCGAAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAATTCTACAAAATTTTCAGGACTCGGCAAAAGTCTCGCATTCGAATTGTACAAACGAGGTGCCAAAGTGATTCTCTTGGCCAGAAGTACAGACAAATTGAAGGAGATCTGCAATGAGCTTAAGGAAACATTCCCCCTAAATCAGAACGAGCCAACTTATTAGTGAGTTTGTCCTCTAATTTTGCACATTTCATCAGACGCTTTTTCAGCT</canonical>
            <polymorphic>TTCCCAGAAAAGTTCCAAGAAGCCTTGAAAGAGTGGGCTCCGGCACTGGTGGTCCCGATTTCGTTGTATGTAGCTTATAAGTGAGTTTTGCAGTTTGGAAATAGCAAAGTCAAGATAATTACTATTTCAGATTGCTGAATAGGATCATCCCAGGAGCTCATAATCTGCCAAAACTCGACGTCAAGAACAAAGTGGTTGTTATCACTGGAGCGAGTTCAGGTAAGAAAAGTTGGGCGACTTTAATTTAGCAAAGAAATGTTGAAAACGCGCATTAATCGAAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAAYTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAATTCTACAAAATTTTCAGGACTCGGCAAAAGTCTCGCATTCGAATTGTACAAACGAGGTGCCAAAGTGATTCTCTTGGCCAGAAGTACAGACAAATTGAAGGAGATCTGCAATGAGCTTAAGGAAACATTCCCCCTAAATCAGAACGAGCCAACTTATTAGTGAGTTTGTCCTCTAATTTTGCACATTTCATCAGACGCTTTTTCAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGGGTTTAAAGCTCTTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTTCTGTTCGTGTGGT</pcr_primer_p2>
		<pcr_amplicon_size>489</pcr_amplicon_size>
		<canonical_amplicon>TTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAAT</canonical_amplicon>
		<polymorphic_amplicon>TTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAAYTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36092</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>275738</contig_pos>
        <strand></strand>
        <context>aytttttgaa[A/T]attccaattt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAA</left_flank>
        <right_flank>ATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTTCCAAGAAGCCTTGAAAGAGTGGGCTCCGGCACTGGTGGTCCCGATTTCGTTGTATGTAGCTTATAAGTGAGTTTTGCAGTTTGGAAATAGCAAAGTCAAGATAATTACTATTTCAGATTGCTGAATAGGATCATCCCAGGAGCTCATAATCTGCCAAAACTCGACGTCAAGAACAAAGTGGTTGTTATCACTGGAGCGAGTTCAGGTAAGAAAAGTTGGGCGACTTTAATTTAGCAAAGAAATGTTGAAAACGCGCATTAATCGAAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAATTCTACAAAATTTTCAGGACTCGGCAAAAGTCTCGCATTCGAATTGTACAAACGAGGTGCCAAAGTGATTCTCTTGGCCAGAAGTACAGACAAATTGAAGGAGATCTGCAATGAGCTTAAGGAAACATTCCCCCTAAATCAGAACGAGCCAACTTATTAGTGAGTTTGTCCTCTAATTTTGCACATTTCATCAGACGCTTTTTCAGCTACTTTGACA</canonical>
            <polymorphic>AAGTTCCAAGAAGCCTTGAAAGAGTGGGCTCCGGCACTGGTGGTCCCGATTTCGTTGTATGTAGCTTATAAGTGAGTTTTGCAGTTTGGAAATAGCAAAGTCAAGATAATTACTATTTCAGATTGCTGAATAGGATCATCCCAGGAGCTCATAATCTGCCAAAACTCGACGTCAAGAACAAAGTGGTTGTTATCACTGGAGCGAGTTCAGGTAAGAAAAGTTGGGCGACTTTAATTTAGCAAAGAAATGTTGAAAACGCGCATTAATCGAAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAWATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAATTCTACAAAATTTTCAGGACTCGGCAAAAGTCTCGCATTCGAATTGTACAAACGAGGTGCCAAAGTGATTCTCTTGGCCAGAAGTACAGACAAATTGAAGGAGATCTGCAATGAGCTTAAGGAAACATTCCCCCTAAATCAGAACGAGCCAACTTATTAGTGAGTTTGTCCTCTAATTTTGCACATTTCATCAGACGCTTTTTCAGCTACTTTGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>270 209 171 136 110 66 27 11</canonical_bands>
                <polymorphic_bands>270 209 171 137 136 66 11</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>161 136 125 107 82 78 66 51 43 38 33 27 26 11 10 6</canonical_bands>
                <polymorphic_bands>161 136 125 107 82 78 66 51 43 38 33 33 26 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAGGGTTTAAAGCTCTTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTTCTGTTCGTGTGGT</pcr_primer_p2>
		<pcr_amplicon_size>489</pcr_amplicon_size>
		<canonical_amplicon>TTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAAT</canonical_amplicon>
		<polymorphic_amplicon>TTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAWATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36093</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>275751</contig_pos>
        <strand></strand>
        <context>tccaattttt[T/C]crgttatttg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTT</left_flank>
        <right_flank>CGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTGAAAGAGTGGGCTCCGGCACTGGTGGTCCCGATTTCGTTGTATGTAGCTTATAAGTGAGTTTTGCAGTTTGGAAATAGCAAAGTCAAGATAATTACTATTTCAGATTGCTGAATAGGATCATCCCAGGAGCTCATAATCTGCCAAAACTCGACGTCAAGAACAAAGTGGTTGTTATCACTGGAGCGAGTTCAGGTAAGAAAAGTTGGGCGACTTTAATTTAGCAAAGAAATGTTGAAAACGCGCATTAATCGAAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAATTCTACAAAATTTTCAGGACTCGGCAAAAGTCTCGCATTCGAATTGTACAAACGAGGTGCCAAAGTGATTCTCTTGGCCAGAAGTACAGACAAATTGAAGGAGATCTGCAATGAGCTTAAGGAAACATTCCCCCTAAATCAGAACGAGCCAACTTATTAGTGAGTTTGTCCTCTAATTTTGCACATTTCATCAGACGCTTTTTCAGCTACTTTGACATCACCGATCCAGA</canonical>
            <polymorphic>CCTTGAAAGAGTGGGCTCCGGCACTGGTGGTCCCGATTTCGTTGTATGTAGCTTATAAGTGAGTTTTGCAGTTTGGAAATAGCAAAGTCAAGATAATTACTATTTCAGATTGCTGAATAGGATCATCCCAGGAGCTCATAATCTGCCAAAACTCGACGTCAAGAACAAAGTGGTTGTTATCACTGGAGCGAGTTCAGGTAAGAAAAGTTGGGCGACTTTAATTTAGCAAAGAAATGTTGAAAACGCGCATTAATCGAAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTYCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAATTCTACAAAATTTTCAGGACTCGGCAAAAGTCTCGCATTCGAATTGTACAAACGAGGTGCCAAAGTGATTCTCTTGGCCAGAAGTACAGACAAATTGAAGGAGATCTGCAATGAGCTTAAGGAAACATTCCCCCTAAATCAGAACGAGCCAACTTATTAGTGAGTTTGTCCTCTAATTTTGCACATTTCATCAGACGCTTTTTCAGCTACTTTGACATCACCGATCCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGGGTTTAAAGCTCTTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTTCTGTTCGTGTGGT</pcr_primer_p2>
		<pcr_amplicon_size>489</pcr_amplicon_size>
		<canonical_amplicon>TTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAAT</canonical_amplicon>
		<polymorphic_amplicon>TTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTYCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36094</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>275753</contig_pos>
        <strand></strand>
        <context>caatttttyc[G/A]gttatttgcc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTC</left_flank>
        <right_flank>GTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAAGAGTGGGCTCCGGCACTGGTGGTCCCGATTTCGTTGTATGTAGCTTATAAGTGAGTTTTGCAGTTTGGAAATAGCAAAGTCAAGATAATTACTATTTCAGATTGCTGAATAGGATCATCCCAGGAGCTCATAATCTGCCAAAACTCGACGTCAAGAACAAAGTGGTTGTTATCACTGGAGCGAGTTCAGGTAAGAAAAGTTGGGCGACTTTAATTTAGCAAAGAAATGTTGAAAACGCGCATTAATCGAAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAATTCTACAAAATTTTCAGGACTCGGCAAAAGTCTCGCATTCGAATTGTACAAACGAGGTGCCAAAGTGATTCTCTTGGCCAGAAGTACAGACAAATTGAAGGAGATCTGCAATGAGCTTAAGGAAACATTCCCCCTAAATCAGAACGAGCCAACTTATTAGTGAGTTTGTCCTCTAATTTTGCACATTTCATCAGACGCTTTTTCAGCTACTTTGACATCACCGATCCAGAAC</canonical>
            <polymorphic>TTGAAAGAGTGGGCTCCGGCACTGGTGGTCCCGATTTCGTTGTATGTAGCTTATAAGTGAGTTTTGCAGTTTGGAAATAGCAAAGTCAAGATAATTACTATTTCAGATTGCTGAATAGGATCATCCCAGGAGCTCATAATCTGCCAAAACTCGACGTCAAGAACAAAGTGGTTGTTATCACTGGAGCGAGTTCAGGTAAGAAAAGTTGGGCGACTTTAATTTAGCAAAGAAATGTTGAAAACGCGCATTAATCGAAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCRGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAATTCTACAAAATTTTCAGGACTCGGCAAAAGTCTCGCATTCGAATTGTACAAACGAGGTGCCAAAGTGATTCTCTTGGCCAGAAGTACAGACAAATTGAAGGAGATCTGCAATGAGCTTAAGGAAACATTCCCCCTAAATCAGAACGAGCCAACTTATTAGTGAGTTTGTCCTCTAATTTTGCACATTTCATCAGACGCTTTTTCAGCTACTTTGACATCACCGATCCAGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGGGTTTAAAGCTCTTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTTCTGTTCGTGTGGT</pcr_primer_p2>
		<pcr_amplicon_size>489</pcr_amplicon_size>
		<canonical_amplicon>TTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAAT</canonical_amplicon>
		<polymorphic_amplicon>TTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCRGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36095</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>275778</contig_pos>
        <strand></strand>
        <context>tctgaaagag[C/T]trttttttca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAG</left_flank>
        <right_flank>TGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTCCCGATTTCGTTGTATGTAGCTTATAAGTGAGTTTTGCAGTTTGGAAATAGCAAAGTCAAGATAATTACTATTTCAGATTGCTGAATAGGATCATCCCAGGAGCTCATAATCTGCCAAAACTCGACGTCAAGAACAAAGTGGTTGTTATCACTGGAGCGAGTTCAGGTAAGAAAAGTTGGGCGACTTTAATTTAGCAAAGAAATGTTGAAAACGCGCATTAATCGAAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAATTCTACAAAATTTTCAGGACTCGGCAAAAGTCTCGCATTCGAATTGTACAAACGAGGTGCCAAAGTGATTCTCTTGGCCAGAAGTACAGACAAATTGAAGGAGATCTGCAATGAGCTTAAGGAAACATTCCCCCTAAATCAGAACGAGCCAACTTATTAGTGAGTTTGTCCTCTAATTTTGCACATTTCATCAGACGCTTTTTCAGCTACTTTGACATCACCGATCCAGAACAAGCGCCATGGGATGAGATTCCAAA</canonical>
            <polymorphic>TGGTCCCGATTTCGTTGTATGTAGCTTATAAGTGAGTTTTGCAGTTTGGAAATAGCAAAGTCAAGATAATTACTATTTCAGATTGCTGAATAGGATCATCCCAGGAGCTCATAATCTGCCAAAACTCGACGTCAAGAACAAAGTGGTTGTTATCACTGGAGCGAGTTCAGGTAAGAAAAGTTGGGCGACTTTAATTTAGCAAAGAAATGTTGAAAACGCGCATTAATCGAAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGYTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAATTCTACAAAATTTTCAGGACTCGGCAAAAGTCTCGCATTCGAATTGTACAAACGAGGTGCCAAAGTGATTCTCTTGGCCAGAAGTACAGACAAATTGAAGGAGATCTGCAATGAGCTTAAGGAAACATTCCCCCTAAATCAGAACGAGCCAACTTATTAGTGAGTTTGTCCTCTAATTTTGCACATTTCATCAGACGCTTTTTCAGCTACTTTGACATCACCGATCCAGAACAAGCGCCATGGGATGAGATTCCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>230 165 162 154 91 83 51 40 24</canonical_bands>
                <polymorphic_bands>395 162 154 91 83 51 40 24</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>162 138 126 116 83 70 58 51 38 34 33 29 24 22 11 5</canonical_bands>
                <polymorphic_bands>162 148 138 116 83 70 58 51 38 34 33 29 24 11 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAGGGTTTAAAGCTCTTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTTCTGTTCGTGTGGT</pcr_primer_p2>
		<pcr_amplicon_size>489</pcr_amplicon_size>
		<canonical_amplicon>TTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAAT</canonical_amplicon>
		<polymorphic_amplicon>TTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGYTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36096</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>275780</contig_pos>
        <strand></strand>
        <context>tgaaagagyt[G/A]ttttttcaac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCT</left_flank>
        <right_flank>TTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCCGATTTCGTTGTATGTAGCTTATAAGTGAGTTTTGCAGTTTGGAAATAGCAAAGTCAAGATAATTACTATTTCAGATTGCTGAATAGGATCATCCCAGGAGCTCATAATCTGCCAAAACTCGACGTCAAGAACAAAGTGGTTGTTATCACTGGAGCGAGTTCAGGTAAGAAAAGTTGGGCGACTTTAATTTAGCAAAGAAATGTTGAAAACGCGCATTAATCGAAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAATTCTACAAAATTTTCAGGACTCGGCAAAAGTCTCGCATTCGAATTGTACAAACGAGGTGCCAAAGTGATTCTCTTGGCCAGAAGTACAGACAAATTGAAGGAGATCTGCAATGAGCTTAAGGAAACATTCCCCCTAAATCAGAACGAGCCAACTTATTAGTGAGTTTGTCCTCTAATTTTGCACATTTCATCAGACGCTTTTTCAGCTACTTTGACATCACCGATCCAGAACAAGCGCCATGGGATGAGATTCCAAAAG</canonical>
            <polymorphic>GTCCCGATTTCGTTGTATGTAGCTTATAAGTGAGTTTTGCAGTTTGGAAATAGCAAAGTCAAGATAATTACTATTTCAGATTGCTGAATAGGATCATCCCAGGAGCTCATAATCTGCCAAAACTCGACGTCAAGAACAAAGTGGTTGTTATCACTGGAGCGAGTTCAGGTAAGAAAAGTTGGGCGACTTTAATTTAGCAAAGAAATGTTGAAAACGCGCATTAATCGAAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTRTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAATTCTACAAAATTTTCAGGACTCGGCAAAAGTCTCGCATTCGAATTGTACAAACGAGGTGCCAAAGTGATTCTCTTGGCCAGAAGTACAGACAAATTGAAGGAGATCTGCAATGAGCTTAAGGAAACATTCCCCCTAAATCAGAACGAGCCAACTTATTAGTGAGTTTGTCCTCTAATTTTGCACATTTCATCAGACGCTTTTTCAGCTACTTTGACATCACCGATCCAGAACAAGCGCCATGGGATGAGATTCCAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGGGTTTAAAGCTCTTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTTCTGTTCGTGTGGT</pcr_primer_p2>
		<pcr_amplicon_size>489</pcr_amplicon_size>
		<canonical_amplicon>TTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAAT</canonical_amplicon>
		<polymorphic_amplicon>TTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTRTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36097</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>275809</contig_pos>
        <strand></strand>
        <context>gccaaaaata[G/T]atgtctttca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATA</left_flank>
        <right_flank>ATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGAGTTTTGCAGTTTGGAAATAGCAAAGTCAAGATAATTACTATTTCAGATTGCTGAATAGGATCATCCCAGGAGCTCATAATCTGCCAAAACTCGACGTCAAGAACAAAGTGGTTGTTATCACTGGAGCGAGTTCAGGTAAGAAAAGTTGGGCGACTTTAATTTAGCAAAGAAATGTTGAAAACGCGCATTAATCGAAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAATTCTACAAAATTTTCAGGACTCGGCAAAAGTCTCGCATTCGAATTGTACAAACGAGGTGCCAAAGTGATTCTCTTGGCCAGAAGTACAGACAAATTGAAGGAGATCTGCAATGAGCTTAAGGAAACATTCCCCCTAAATCAGAACGAGCCAACTTATTAGTGAGTTTGTCCTCTAATTTTGCACATTTCATCAGACGCTTTTTCAGCTACTTTGACATCACCGATCCAGAACAAGCGCCATGGGATGAGATTCCAAAAGTTGATATTCTAATCAACAACGCTGGTATG</canonical>
            <polymorphic>GTGAGTTTTGCAGTTTGGAAATAGCAAAGTCAAGATAATTACTATTTCAGATTGCTGAATAGGATCATCCCAGGAGCTCATAATCTGCCAAAACTCGACGTCAAGAACAAAGTGGTTGTTATCACTGGAGCGAGTTCAGGTAAGAAAAGTTGGGCGACTTTAATTTAGCAAAGAAATGTTGAAAACGCGCATTAATCGAAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAKATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAATTCTACAAAATTTTCAGGACTCGGCAAAAGTCTCGCATTCGAATTGTACAAACGAGGTGCCAAAGTGATTCTCTTGGCCAGAAGTACAGACAAATTGAAGGAGATCTGCAATGAGCTTAAGGAAACATTCCCCCTAAATCAGAACGAGCCAACTTATTAGTGAGTTTGTCCTCTAATTTTGCACATTTCATCAGACGCTTTTTCAGCTACTTTGACATCACCGATCCAGAACAAGCGCCATGGGATGAGATTCCAAAAGTTGATATTCTAATCAACAACGCTGGTATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGGGTTTAAAGCTCTTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTTCTGTTCGTGTGGT</pcr_primer_p2>
		<pcr_amplicon_size>489</pcr_amplicon_size>
		<canonical_amplicon>TTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAAT</canonical_amplicon>
		<polymorphic_amplicon>TTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAKATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36098</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>275847</contig_pos>
        <strand></strand>
        <context>taaaaactag[A/G]aattttctaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAG</left_flank>
        <right_flank>AATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACTATTTCAGATTGCTGAATAGGATCATCCCAGGAGCTCATAATCTGCCAAAACTCGACGTCAAGAACAAAGTGGTTGTTATCACTGGAGCGAGTTCAGGTAAGAAAAGTTGGGCGACTTTAATTTAGCAAAGAAATGTTGAAAACGCGCATTAATCGAAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAATTCTACAAAATTTTCAGGACTCGGCAAAAGTCTCGCATTCGAATTGTACAAACGAGGTGCCAAAGTGATTCTCTTGGCCAGAAGTACAGACAAATTGAAGGAGATCTGCAATGAGCTTAAGGAAACATTCCCCCTAAATCAGAACGAGCCAACTTATTAGTGAGTTTGTCCTCTAATTTTGCACATTTCATCAGACGCTTTTTCAGCTACTTTGACATCACCGATCCAGAACAAGCGCCATGGGATGAGATTCCAAAAGTTGATATTCTAATCAACAACGCTGGTATGGCGAACCGTGGTTCTTGCGCTGACACCACTATGGCCAT</canonical>
            <polymorphic>TTACTATTTCAGATTGCTGAATAGGATCATCCCAGGAGCTCATAATCTGCCAAAACTCGACGTCAAGAACAAAGTGGTTGTTATCACTGGAGCGAGTTCAGGTAAGAAAAGTTGGGCGACTTTAATTTAGCAAAGAAATGTTGAAAACGCGCATTAATCGAAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGRAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAATTCTACAAAATTTTCAGGACTCGGCAAAAGTCTCGCATTCGAATTGTACAAACGAGGTGCCAAAGTGATTCTCTTGGCCAGAAGTACAGACAAATTGAAGGAGATCTGCAATGAGCTTAAGGAAACATTCCCCCTAAATCAGAACGAGCCAACTTATTAGTGAGTTTGTCCTCTAATTTTGCACATTTCATCAGACGCTTTTTCAGCTACTTTGACATCACCGATCCAGAACAAGCGCCATGGGATGAGATTCCAAAAGTTGATATTCTAATCAACAACGCTGGTATGGCGAACCGTGGTTCTTGCGCTGACACCACTATGGCCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>318 171 161 136 110 66 27 11</canonical_bands>
                <polymorphic_bands>318 171 161 136 121 66 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAGGGTTTAAAGCTCTTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTTCTGTTCGTGTGGT</pcr_primer_p2>
		<pcr_amplicon_size>489</pcr_amplicon_size>
		<canonical_amplicon>TTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAAT</canonical_amplicon>
		<polymorphic_amplicon>TTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGRAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36099</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>275870</contig_pos>
        <strand></strand>
        <context>attctgagat[A/T]gcaaagtttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGAT</left_flank>
        <right_flank>GCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATCATCCCAGGAGCTCATAATCTGCCAAAACTCGACGTCAAGAACAAAGTGGTTGTTATCACTGGAGCGAGTTCAGGTAAGAAAAGTTGGGCGACTTTAATTTAGCAAAGAAATGTTGAAAACGCGCATTAATCGAAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAATTCTACAAAATTTTCAGGACTCGGCAAAAGTCTCGCATTCGAATTGTACAAACGAGGTGCCAAAGTGATTCTCTTGGCCAGAAGTACAGACAAATTGAAGGAGATCTGCAATGAGCTTAAGGAAACATTCCCCCTAAATCAGAACGAGCCAACTTATTAGTGAGTTTGTCCTCTAATTTTGCACATTTCATCAGACGCTTTTTCAGCTACTTTGACATCACCGATCCAGAACAAGCGCCATGGGATGAGATTCCAAAAGTTGATATTCTAATCAACAACGCTGGTATGGCGAACCGTGGTTCTTGCGCTGACACCACTATGGCCATTCATAGGTAACACTTGCAATATT</canonical>
            <polymorphic>GGATCATCCCAGGAGCTCATAATCTGCCAAAACTCGACGTCAAGAACAAAGTGGTTGTTATCACTGGAGCGAGTTCAGGTAAGAAAAGTTGGGCGACTTTAATTTAGCAAAGAAATGTTGAAAACGCGCATTAATCGAAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATWGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAATTCTACAAAATTTTCAGGACTCGGCAAAAGTCTCGCATTCGAATTGTACAAACGAGGTGCCAAAGTGATTCTCTTGGCCAGAAGTACAGACAAATTGAAGGAGATCTGCAATGAGCTTAAGGAAACATTCCCCCTAAATCAGAACGAGCCAACTTATTAGTGAGTTTGTCCTCTAATTTTGCACATTTCATCAGACGCTTTTTCAGCTACTTTGACATCACCGATCCAGAACAAGCGCCATGGGATGAGATTCCAAAAGTTGATATTCTAATCAACAACGCTGGTATGGCGAACCGTGGTTCTTGCGCTGACACCACTATGGCCATTCATAGGTAACACTTGCAATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGGGTTTAAAGCTCTTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTTCTGTTCGTGTGGT</pcr_primer_p2>
		<pcr_amplicon_size>489</pcr_amplicon_size>
		<canonical_amplicon>TTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAAT</canonical_amplicon>
		<polymorphic_amplicon>TTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATWGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36100</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>275905</contig_pos>
        <strand></strand>
        <context>ttgacatcct[C/T]caaaaytttc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCT</left_flank>
        <right_flank>CAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGTCAAGAACAAAGTGGTTGTTATCACTGGAGCGAGTTCAGGTAAGAAAAGTTGGGCGACTTTAATTTAGCAAAGAAATGTTGAAAACGCGCATTAATCGAAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAATTCTACAAAATTTTCAGGACTCGGCAAAAGTCTCGCATTCGAATTGTACAAACGAGGTGCCAAAGTGATTCTCTTGGCCAGAAGTACAGACAAATTGAAGGAGATCTGCAATGAGCTTAAGGAAACATTCCCCCTAAATCAGAACGAGCCAACTTATTAGTGAGTTTGTCCTCTAATTTTGCACATTTCATCAGACGCTTTTTCAGCTACTTTGACATCACCGATCCAGAACAAGCGCCATGGGATGAGATTCCAAAAGTTGATATTCTAATCAACAACGCTGGTATGGCGAACCGTGGTTCTTGCGCTGACACCACTATGGCCATTCATAGGTAACACTTGCAATATTTTTTCTAATTCAATATCGAATGTTCCAGACAAGCT</canonical>
            <polymorphic>GACGTCAAGAACAAAGTGGTTGTTATCACTGGAGCGAGTTCAGGTAAGAAAAGTTGGGCGACTTTAATTTAGCAAAGAAATGTTGAAAACGCGCATTAATCGAAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTYCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAATTCTACAAAATTTTCAGGACTCGGCAAAAGTCTCGCATTCGAATTGTACAAACGAGGTGCCAAAGTGATTCTCTTGGCCAGAAGTACAGACAAATTGAAGGAGATCTGCAATGAGCTTAAGGAAACATTCCCCCTAAATCAGAACGAGCCAACTTATTAGTGAGTTTGTCCTCTAATTTTGCACATTTCATCAGACGCTTTTTCAGCTACTTTGACATCACCGATCCAGAACAAGCGCCATGGGATGAGATTCCAAAAGTTGATATTCTAATCAACAACGCTGGTATGGCGAACCGTGGTTCTTGCGCTGACACCACTATGGCCATTCATAGGTAACACTTGCAATATTTTTTCTAATTCAATATCGAATGTTCCAGACAAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGGGTTTAAAGCTCTTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTTCTGTTCGTGTGGT</pcr_primer_p2>
		<pcr_amplicon_size>489</pcr_amplicon_size>
		<canonical_amplicon>TTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAAT</canonical_amplicon>
		<polymorphic_amplicon>TTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTYCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36101</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>275911</contig_pos>
        <strand></strand>
        <context>tcctycaaaa[C/T]tttcaaagtg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAA</left_flank>
        <right_flank>TTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAACAAAGTGGTTGTTATCACTGGAGCGAGTTCAGGTAAGAAAAGTTGGGCGACTTTAATTTAGCAAAGAAATGTTGAAAACGCGCATTAATCGAAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAATTCTACAAAATTTTCAGGACTCGGCAAAAGTCTCGCATTCGAATTGTACAAACGAGGTGCCAAAGTGATTCTCTTGGCCAGAAGTACAGACAAATTGAAGGAGATCTGCAATGAGCTTAAGGAAACATTCCCCCTAAATCAGAACGAGCCAACTTATTAGTGAGTTTGTCCTCTAATTTTGCACATTTCATCAGACGCTTTTTCAGCTACTTTGACATCACCGATCCAGAACAAGCGCCATGGGATGAGATTCCAAAAGTTGATATTCTAATCAACAACGCTGGTATGGCGAACCGTGGTTCTTGCGCTGACACCACTATGGCCATTCATAGGTAACACTTGCAATATTTTTTCTAATTCAATATCGAATGTTCCAGACAAGCTATGGAA</canonical>
            <polymorphic>AAGAACAAAGTGGTTGTTATCACTGGAGCGAGTTCAGGTAAGAAAAGTTGGGCGACTTTAATTTAGCAAAGAAATGTTGAAAACGCGCATTAATCGAAATTTTCGAAACCAATAACGGGTATTTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAAYTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAATTCTACAAAATTTTCAGGACTCGGCAAAAGTCTCGCATTCGAATTGTACAAACGAGGTGCCAAAGTGATTCTCTTGGCCAGAAGTACAGACAAATTGAAGGAGATCTGCAATGAGCTTAAGGAAACATTCCCCCTAAATCAGAACGAGCCAACTTATTAGTGAGTTTGTCCTCTAATTTTGCACATTTCATCAGACGCTTTTTCAGCTACTTTGACATCACCGATCCAGAACAAGCGCCATGGGATGAGATTCCAAAAGTTGATATTCTAATCAACAACGCTGGTATGGCGAACCGTGGTTCTTGCGCTGACACCACTATGGCCATTCATAGGTAACACTTGCAATATTTTTTCTAATTCAATATCGAATGTTCCAGACAAGCTATGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGGGTTTAAAGCTCTTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTTCTGTTCGTGTGGT</pcr_primer_p2>
		<pcr_amplicon_size>489</pcr_amplicon_size>
		<canonical_amplicon>TTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAACTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAAT</canonical_amplicon>
		<polymorphic_amplicon>TTGAGGGTTTAAAGCTCTTGTGCTACAATACCGGTCGATGAAATTTACAAAAACGTATTTTTATTTTTTTCAGTAGATTTTCAGCCATTTTGACCATCTGCAAGCGTCTAGAGTTCGGCTGTCAAGTTTCCAAGCACTTTGAAAGTTTTGGAGGATGTGAAACAGACCTAGAATGGAAATTTTGCATCAACAGAACTTTTTGAAAATTCCAATTTTTTCGGTTATTTGCCGATTTCTGAAAGAGCTGTTTTTTCAACGTTTTCAGGCCAAAAATAGATGTCTTTCAGCAATTGGCACATAACTTAAAAACTAGAAATTTTCTAAAAATTCTGAGATAGCAAAGTTTTCAATCTATGTCTGTTTGACATCCTCCAAAAYTTTCAAAGTGATCGGAAACTTGTCAGCCGAGCTACAGACTCCTGGAAATGTTAAAAATGGCCGAAAATCAGCTGAAAAATATCATATTTGGACCACACGAACAGAAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36102</snp_id>
        <super_contig>c010401107.Contig3</super_contig>
        <contig_pos>304186</contig_pos>
        <strand>+</strand>
        <context>AAATTGAGAA[C/T]AATGTTCACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACAATATTTACTATAAAATTGAGAACAATATTGAGAACAAAATTGAGAA</left_flank>
        <right_flank>AATGTTCACTATAAATTCTTACATGGGTCTCTTTTTCACGCTGTTTAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTCAAAAGTCCTGAGCTCGGCTGCCAAATTTTCTATCACTTTTAAAGTTTTGGATTGTGTAAATCCGACCAAGATTGCAGTTACTTTGCAGTTACACAATTTTTTGAAAATCCCTAGTTTTTCAGCTATTAGTCATTTTTCAAAAGACTTATTTTTCCTATTTTTTTGCTGAAAATGTGAAAAAAAGCAGGAATCTTTCAGAGCTCAGAAAATAGCTGAAAACTAAGAATTTTCAAGAAATTCTTCGTATCAAAAGTTGTCAATCTTAGTTTGTTATACGACCTTCAAAGTTTTTGAATCGAATGAAAACTTAACAGCCGAACTTCAGGCTCCTAAAAATGCCGAAAATCAACTGAAAACTCGTTTTTGTATATTTTATTGACCGGTGATGTATCTGGAAAAATTTGCACACTTGAAATTGAGAAACTGAGAACAATATTATTGAGAACAATATTTACTATAAAATTGAGAACAATATTGAGAACAAAATTGAGAACAATGTTCACTATAAATTCTTACATGGGTCTCTTTTTCACGCTGTTTAAGAATTTGTAAAGCTTCTGGATGTCATTTTAAAAACTGTAACTATTTTCAAAAGTAGTAAAAAACACAGAAATTTGGAGTTTCGCTTGACAAATTACAGTAAGATCTGGGTCTCAACTTTTATTCTTTCTACAAATAAATGTTCAAAAGCAGAAAAAAAACTTTTTTGCATCTTAATTCAAAATGTCTGATTTCTCATTTTTTAAAGTGCCTACAGTACTGCCCACATGTTTTCAATTTCATGATTTTCCATTATTTTTCAGTTCAACTACGCTTCTCGACCACCAATGCCACCACAACAACAATCCAAGCCAATCTACTTGTATTCACCACAACCACAACCACAACAACAGCAGCAACCACAAACTCAACAAGCTCCACAACCAAGAATGTTCATGCAGCCACGTGGCATCACCTCAGCCGTCAATACTCGTCCATCTTTGGCAGCTCAACC</canonical>
            <polymorphic>ATTTTCAAAAGTCCTGAGCTCGGCTGCCAAATTTTCTATCACTTTTAAAGTTTTGGATTGTGTAAATCCGACCAAGATTGCAGTTACTTTGCAGTTACACAATTTTTTGAAAATCCCTAGTTTTTCAGCTATTAGTCATTTTTCAAAAGACTTATTTTTCCTATTTTTTTGCTGAAAATGTGAAAAAAAGCAGGAATCTTTCAGAGCTCAGAAAATAGCTGAAAACTAAGAATTTTCAAGAAATTCTTCGTATCAAAAGTTGTCAATCTTAGTTTGTTATACGACCTTCAAAGTTTTTGAATCGAATGAAAACTTAACAGCCGAACTTCAGGCTCCTAAAAATGCCGAAAATCAACTGAAAACTCGTTTTTGTATATTTTATTGACCGGTGATGTATCTGGAAAAATTTGCACACTTGAAATTGAGAAACTGAGAACAATATTATTGAGAACAATATTTACTATAAAATTGAGAACAATATTGAGAACAAAATTGAGAAYAATGTTCACTATAAATTCTTACATGGGTCTCTTTTTCACGCTGTTTAAGAATTTGTAAAGCTTCTGGATGTCATTTTAAAAACTGTAACTATTTTCAAAAGTAGTAAAAAACACAGAAATTTGGAGTTTCGCTTGACAAATTACAGTAAGATCTGGGTCTCAACTTTTATTCTTTCTACAAATAAATGTTCAAAAGCAGAAAAAAAACTTTTTTGCATCTTAATTCAAAATGTCTGATTTCTCATTTTTTAAAGTGCCTACAGTACTGCCCACATGTTTTCAATTTCATGATTTTCCATTATTTTTCAGTTCAACTACGCTTCTCGACCACCAATGCCACCACAACAACAATCCAAGCCAATCTACTTGTATTCACCACAACCACAACCACAACAACAGCAGCAACCACAAACTCAACAAGCTCCACAACCAAGAATGTTCATGCAGCCACGTGGCATCACCTCAGCCGTCAATACTCGTCCATCTTTGGCAGCTCAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACTTGAAATTGAGAAACTGAG</pcr_primer_p1>
		<pcr_primer_p2>GACCCAGATCTTACTGTAATTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACACTTGAAATTGAGAAACTGAGAACAATATTATTGAGAACAATATTTACTATAAAATTGAGAACAATATTGAGAACAAAATTGAGAACAATGTTCACTATAAATTCTTACATGGGTCTCTTTTTCACGCTGTTTAAGAATTTGTAAAGCTTCTGGATGTCATTTTAAAAACTGTAACTATTTTCAAAAGTAGTAAAAAACACAGAAATTTGGAGTTTCGCTTGACAAATTACAGTAAGATCTGGGTC</canonical_amplicon>
		<polymorphic_amplicon>ACACTTGAAATTGAGAAACTGAGAACAATATTATTGAGAACAATATTTACTATAAAATTGAGAACAATATTGAGAACAAAATTGAGAAYAATGTTCACTATAAATTCTTACATGGGTCTCTTTTTCACGCTGTTTAAGAATTTGTAAAGCTTCTGGATGTCATTTTAAAAACTGTAACTATTTTCAAAAGTAGTAAAAAACACAGAAATTTGGAGTTTCGCTTGACAAATTACAGTAAGATCTGGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36103</snp_id>
        <super_contig>c010401155.Contig4</super_contig>
        <contig_pos>24838</contig_pos>
        <strand></strand>
        <context>ttttcgaaat[C/T]ttttagtttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGCTTCGAAAATTTCTTGAAAACTTTGCGTTCACAGAGCTTTTCGAAAT</left_flank>
        <right_flank>TTTTAGTTTTTCTGATATTTACTGATTTGTGTTTTCCCCATTTCAATACA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTCCAAGGTACCTCCGGAGGGCCCTTCAACTAGAGGGGTCCATCTATTTTCCGGTCAGTTTTTTCGAAATTTTGTATCGAAAAATTCAACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTCCATCGAAAAATAAAATTTCAACACGTTTATATTAAATTGTGGAGTTCCCGGAATATCTTCCACAGGAAAAGTACGGAAATTTTCTGATTTCAAAACACATTTTGGAGGGGGTCCTTCTATTACAGGGGGCCCTTCTATTTTTCCAAGCCCCTCTCGTAGGGCCCTTCTATTAGAGGGGCCTTTCTATTAAGGGTGCCCTTCTAATACAGGTTTTACAGTGTACAAAAACGTTTTTCAGTTGATTTTCGGCCGTCTTGAAAATTTTCAAAAAGCTGGAGCTCGGTTTTCAAGTTTCCGATCGCTTCGAAAATTTCTTGAAAACTTTGCGTTCACAGAGCTTTTCGAAATCTTTTAGTTTTTCTGATATTTACTGATTTGTGTTTTCCCCATTTCAATACAAAAATGGTACAAAAAGGGTGTCCTTCAAAAACCGGCAAATAGCTGAAAAACTCGTAGTTTTAAAGTTTTTATGCATGCAAAGTTCTCAATCTAGGCCTGTTTTACACCTACAAAAGTTTTCAAAGCGACCCAACATTCCGCAGACTCCTGAAAACGGACAAAAGCAACTGAAAAACATGTTTTTCGCATATCTTATTGGCCGGTACTGTATGCTCCATTATCTCTAGGAAGCTCGATTTTTTGAATTTCAAAAGTTATCTGAAATCCATAAACTTTGAAAGGGAAAACGTACGGTTCCTGGGATCGCAACAAAATCCTAAGCGTCTACAATTACAAAAAAGGTAATTTTATAACGGGAATTCCACACTTCGAGGTAAAGTTCGATTTTTCGAGAGTATTTTTTTCCACTGTTTTTCTCTTCTTCTGTTTCTTATTACAGATAAATTCTTC</canonical>
            <polymorphic>TGTTCCAAGGTACCTCCGGAGGGCCCTTCAACTAGAGGGGTCCATCTATTTTCCGGTCAGTTTTTTCGAAATTTTGTATCGAAAAATTCAACGAAGTTTCGTTCAAAATTCATGAAAATCTGCCAATTTCACCAAAATTTAGCAAGATTTCCATCGAAAAATAAAATTTCAACACGTTTATATTAAATTGTGGAGTTCCCGGAATATCTTCCACAGGAAAAGTACGGAAATTTTCTGATTTCAAAACACATTTTGGAGGGGGTCCTTCTATTACAGGGGGCCCTTCTATTTTTCCAAGCCCCTCTCGTAGGGCCCTTCTATTAGAGGGGCCTTTCTATTAAGGGTGCCCTTCTAATACAGGTTTTACAGTGTACAAAAACGTTTTTCAGTTGATTTTCGGCCGTCTTGAAAATTTTCAAAAAGCTGGAGCTCGGTTTTCAAGTTTCCGATCGCTTCGAAAATTTCTTGAAAACTTTGCGTTCACAGAGCTTTTCGAAATYTTTTAGTTTTTCTGATATTTACTGATTTGTGTTTTCCCCATTTCAATACAAAAATGGTACAAAAAGGGTGTCCTTCAAAAACCGGCAAATAGCTGAAAAACTCGTAGTTTTAAAGTTTTTATGCATGCAAAGTTCTCAATCTAGGCCTGTTTTACACCTACAAAAGTTTTCAAAGCGACCCAACATTCCGCAGACTCCTGAAAACGGACAAAAGCAACTGAAAAACATGTTTTTCGCATATCTTATTGGCCGGTACTGTATGCTCCATTATCTCTAGGAAGCTCGATTTTTTGAATTTCAAAAGTTATCTGAAATCCATAAACTTTGAAAGGGAAAACGTACGGTTCCTGGGATCGCAACAAAATCCTAAGCGTCTACAATTACAAAAAAGGTAATTTTATAACGGGAATTCCACACTTCGAGGTAAAGTTCGATTTTTCGAGAGTATTTTTTTCCACTGTTTTTCTCTTCTTCTGTTTCTTATTACAGATAAATTCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAATTCCGAAACACAGTTA</pcr_primer_p1>
		<pcr_primer_p2>TTCCTAGAGATAATGGAGCATAC</pcr_primer_p2>
		<pcr_amplicon_size>851</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTAGTTTTTCTGATATTTACTGATTTGTGTTTTCCCCATTTCAATACAAAAATGGTACAAAAAGGGTGTCCTTCAAAAACCGGCAAATAGCTGAAAAACTCGTAGTTTTAAAGTTTTTATGCATGCAAAGTTCTCAATCTAGGCCTGTTTTACACCTACAAAAGTTTTCAAAGCGACCCAACATTCCGCAGACTCCTGAAAACGGACAAAAGCAACTGAAAAACATGTTTTTCGCATATCTTATTGGCCGGTACTGTATGCTCCATTATCTCTAGGAA</canonical_amplicon>
		<polymorphic_amplicon>TYTTTTAGTTTTTCTGATATTTACTGATTTGTGTTTTCCCCATTTCAATACAAAAATGGTACAAAAAGGGTGTCCTTCAAAAACCGGCAAATAGCTGAAAAACTCGTAGTTTTAAAGTTTTTATGCATGCAAAGTTCTCAATCTAGGCCTGTTTTACACCTACAAAAGTTTTCAAAGCGACCCAACATTCCGCAGACTCCTGAAAACGGACAAAAGCAACTGAAAAACATGTTTTTCGCATATCTTATTGGCCGGTACTGTATGCTCCATTATCTCTAGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36104</snp_id>
        <super_contig>c010401155.Contig4</super_contig>
        <contig_pos>27224</contig_pos>
        <strand>+</strand>
        <context>TATATGCTTC[A/T]GAAAAATAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGATTTTGTCGGAACAGTAGGGAAGTGATTGAACGTATTTTATATGCTTC</left_flank>
        <right_flank>GAAAAATAGTTTTCGGAAACTCTAGCACAAAGAAATTACTGATAAATATT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACCCTTCAAAATTTTCAAAGTAATCGGGAACTTGACAGCCGAGTTCCAGACTCTTGAAAACTGGCAAAATCAACTAAAAACAAACGTTTTGTATACCTTACCGACCCGTACTGTATGAAGCGGCAGGATAGCCATGTGCTATGAATATACTCACCAATACTCTGAAAGGAATATTTGTCGATATTTTCTTCCATTTGATGCTAGTTGCCGGTCTCAACCTTCCTATTAGATCAGAAAATATCGCTTTCTGTTTGACAACTCCATTTTCAGTAACTGTCAACGACGAATCCAAAGTTTCGCATTCTATCGGTCTCCCATTTTCTCTTATATACCCTTTCTCTCTATAAAACGCTCCTGGACCATTTGTAGTTGCCACTGCTTTAAGCTCTGGGTGCTTGGTAGCCAAATGATGAGCAATAGTTCCCGCAAATGAAATTCCATAAAGACCGATTTTGTCGGAACAGTAGGGAAGTGATTGAACGTATTTTATATGCTTCTGAAAAATAGTTTTCGGAAACTCTAGCACAAAGAAATTACTGATAAATATTCAATATTAACGTCTTCGAGCGTTTTCGGAAGTCCAGGCTCATCGAACATCGGGAAACAAAAGCTCAAAAATCCTTCCGATGCAAAAAGCGGTGCGTGAGTTTTACAAAGTCTTCCGCTCAAAACCGGAGTGTCAATAATACATGGAAAGGGTCCAGGACCGGGTGGTTTATAGATAACACCCCAGATTCCACCTTGCTTTACTTCGATTTCAGCTACCAATGGATGATGCCATCGCTTTTTGAGATTGACTTCGTCTAGGAGTTCTTCGGATTCTGAGAGCAATCTGAAACGTTAGTTTTGTTTTTTTACATTATTTGTCCGGAACCAAAACTCACAACCGCATAGCTCAGGCAGTAACAAACCTTAAAGAATAGAAAAACGGCTCTCCTTCGAAATTCTTAATCATATCCCCATATGAAACATCGTCGGTTCTTTCTACAGTCATAAAT</canonical>
            <polymorphic>ACACCCTTCAAAATTTTCAAAGTAATCGGGAACTTGACAGCCGAGTTCCAGACTCTTGAAAACTGGCAAAATCAACTAAAAACAAACGTTTTGTATACCTTACCGACCCGTACTGTATGAAGCGGCAGGATAGCCATGTGCTATGAATATACTCACCAATACTCTGAAAGGAATATTTGTCGATATTTTCTTCCATTTGATGCTAGTTGCCGGTCTCAACCTTCCTATTAGATCAGAAAATATCGCTTTCTGTTTGACAACTCCATTTTCAGTAACTGTCAACGACGAATCCAAAGTTTCGCATTCTATCGGTCTCCCATTTTCTCTTATATACCCTTTCTCTCTATAAAACGCTCCTGGACCATTTGTAGTTGCCACTGCTTTAAGCTCTGGGTGCTTGGTAGCCAAATGATGAGCAATAGTTCCCGCAAATGAAATTCCATAAAGACCGATTTTGTCGGAACAGTAGGGAAGTGATTGAACGTATTTTATATGCTTCWGAAAAATAGTTTTCGGAAACTCTAGCACAAAGAAATTACTGATAAATATTCAATATTAACGTCTTCGAGCGTTTTCGGAAGTCCAGGCTCATCGAACATCGGGAAACAAAAGCTCAAAAATCCTTCCGATGCAAAAAGCGGTGCGTGAGTTTTACAAAGTCTTCCGCTCAAAACCGGAGTGTCAATAATACATGGAAAGGGTCCAGGACCGGGTGGTTTATAGATAACACCCCAGATTCCACCTTGCTTTACTTCGATTTCAGCTACCAATGGATGATGCCATCGCTTTTTGAGATTGACTTCGTCTAGGAGTTCTTCGGATTCTGAGAGCAATCTGAAACGTTAGTTTTGTTTTTTTACATTATTTGTCCGGAACCAAAACTCACAACCGCATAGCTCAGGCAGTAACAAACCTTAAAGAATAGAAAAACGGCTCTCCTTCGAAATTCTTAATCATATCCCCATATGAAACATCGTCGGTTCTTTCTACAGTCATAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTGTCGGAACAGTAGG</pcr_primer_p1>
		<pcr_primer_p2>CCTTTCCATGTATTATTGACACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATTTTGTCGGAACAGTAGGGAAGTGATTGAACGTATTTTATATGCTTCTGAAAAATAGTTTTCGGAAACTCTAGCACAAAGAAATTACTGATAAATATTCAATATTAACGTCTTCGAGCGTTTTCGGAAGTCCAGGCTCATCGAACATCGGGAAACAAAAGCTCAAAAATCCTTCCGATGCAAAAAGCGGTGCGTGAGTTTTACAAAGTCTTCCGCTCAAAACCGGAGTGTCAATAATACATGGAAAGG</canonical_amplicon>
		<polymorphic_amplicon>GATTTTGTCGGAACAGTAGGGAAGTGATTGAACGTATTTTATATGCTTCWGAAAAATAGTTTTCGGAAACTCTAGCACAAAGAAATTACTGATAAATATTCAATATTAACGTCTTCGAGCGTTTTCGGAAGTCCAGGCTCATCGAACATCGGGAAACAAAAGCTCAAAAATCCTTCCGATGCAAAAAGCGGTGCGTGAGTTTTACAAAGTCTTCCGCTCAAAACCGGAGTGTCAATAATACATGGAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36105</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>3760</contig_pos>
        <strand>+</strand>
        <context>TGTGTTTCCC[A/C]AGGGAAAGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCC</left_flank>
        <right_flank>AGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGGGTCCCACAACGACAACTACCGTATCACAAAAAGTGTTTTTATTATTTTCCGGATTTATTAACTCGATCCTAGTTCGTTTTCGGTCAATTTTTTTTCACTTTATCAATTTTAGACGTGTTTGACGAAAAGCTTTCCGTCGATTTTTTTTTGTTTTTTTTTCCACAAAGTTAGTAAATCCAGAAAAGTTAGTAAATCCAGAAAAGTATTTTCAGGTTACGGTAGTTTTCGCTATGGGACCTTTCGGCGTCTCTCTTCCACGGCACCAATATGTTTGTACCAGGATAATAATAGTCTCAGATACAATACCTGAAAAAAATGCAGGTGTTTTTTAAACATTTTCTAATTAGGAAAAAAGTTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAATCAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCATAACCGGTCGTCTGGGGCGTAACCTCTTCAAGCGCACACCCTCACCAAAAACTTCTTTTCATCTACTTCATCTTTCTTTTTCTAACGGTATATATTTTTGGTGTCAAACTGGTATTTGTTAGTGGCCTCATCTATAGGTTAGTACAGTTCATCTACTATAAATTCTCGATTCTCAAGAGGTCAGATGAATAGGAGAGGAGAAAGAGACAGAAAAAAAGAAAAAGAAAGGAAATGATGGATCACTCGTTCTTCTTTCCGCAATTTATCTTTATCACCTTCTTCACAACGATAATGACAGTTGGCGGTTGAGGTTTGGAAGATGTGCTTCTTAGATTGTTTTTCTGTTTTGAACTTTTTTTTTAAGTACCGTATTTCCGTCAAATTTCAAGCTCAATT</canonical>
            <polymorphic>GTGGGTCCCACAACGACAACTACCGTATCACAAAAAGTGTTTTTATTATTTTCCGGATTTATTAACTCGATCCTAGTTCGTTTTCGGTCAATTTTTTTTCACTTTATCAATTTTAGACGTGTTTGACGAAAAGCTTTCCGTCGATTTTTTTTTGTTTTTTTTTCCACAAAGTTAGTAAATCCAGAAAAGTTAGTAAATCCAGAAAAGTATTTTCAGGTTACGGTAGTTTTCGCTATGGGACCTTTCGGCGTCTCTCTTCCACGGCACCAATATGTTTGTACCAGGATAATAATAGTCTCAGATACAATACCTGAAAAAAATGCAGGTGTTTTTTAAACATTTTCTAATTAGGAAAAAAGTTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAATCAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCMAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCATAACCGGTCGTCTGGGGCGTAACCTCTTCAAGCGCACACCCTCACCAAAAACTTCTTTTCATCTACTTCATCTTTCTTTTTCTAACGGTATATATTTTTGGTGTCAAACTGGTATTTGTTAGTGGCCTCATCTATAGGTTAGTACAGTTCATCTACTATAAATTCTCGATTCTCAAGAGGTCAGATGAATAGGAGAGGAGAAAGAGACAGAAAAAAAGAAAAAGAAAGGAAATGATGGATCACTCGTTCTTCTTTCCGCAATTTATCTTTATCACCTTCTTCACAACGATAATGACAGTTGGCGGTTGAGGTTTGGAAGATGTGCTTCTTAGATTGTTTTTCTGTTTTGAACTTTTTTTTTAAGTACCGTATTTCCGTCAAATTTCAAGCTCAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGCTAACCAAAGCTCGTATAG</pcr_primer_p1>
		<pcr_primer_p2>TGCAAATTTAGGTATCTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAATCAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCA</canonical_amplicon>
		<polymorphic_amplicon>TTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAATCAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCMAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36106</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>3780</contig_pos>
        <strand>+</strand>
        <context>AGACTTGTAG[C/T]AAAAAAAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAG</left_flank>
        <right_flank>AAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTGACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACCGTATCACAAAAAGTGTTTTTATTATTTTCCGGATTTATTAACTCGATCCTAGTTCGTTTTCGGTCAATTTTTTTTCACTTTATCAATTTTAGACGTGTTTGACGAAAAGCTTTCCGTCGATTTTTTTTTGTTTTTTTTTCCACAAAGTTAGTAAATCCAGAAAAGTTAGTAAATCCAGAAAAGTATTTTCAGGTTACGGTAGTTTTCGCTATGGGACCTTTCGGCGTCTCTCTTCCACGGCACCAATATGTTTGTACCAGGATAATAATAGTCTCAGATACAATACCTGAAAAAAATGCAGGTGTTTTTTAAACATTTTCTAATTAGGAAAAAAGTTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAATCAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCATAACCGGTCGTCTGGGGCGTAACCTCTTCAAGCGCACACCCTCACCAAAAACTTCTTTTCATCTACTTCATCTTTCTTTTTCTAACGGTATATATTTTTGGTGTCAAACTGGTATTTGTTAGTGGCCTCATCTATAGGTTAGTACAGTTCATCTACTATAAATTCTCGATTCTCAAGAGGTCAGATGAATAGGAGAGGAGAAAGAGACAGAAAAAAAGAAAAAGAAAGGAAATGATGGATCACTCGTTCTTCTTTCCGCAATTTATCTTTATCACCTTCTTCACAACGATAATGACAGTTGGCGGTTGAGGTTTGGAAGATGTGCTTCTTAGATTGTTTTTCTGTTTTGAACTTTTTTTTTAAGTACCGTATTTCCGTCAAATTTCAAGCTCAATTATCTCGATTCTTGTGAAAGT</canonical>
            <polymorphic>TACCGTATCACAAAAAGTGTTTTTATTATTTTCCGGATTTATTAACTCGATCCTAGTTCGTTTTCGGTCAATTTTTTTTCACTTTATCAATTTTAGACGTGTTTGACGAAAAGCTTTCCGTCGATTTTTTTTTGTTTTTTTTTCCACAAAGTTAGTAAATCCAGAAAAGTTAGTAAATCCAGAAAAGTATTTTCAGGTTACGGTAGTTTTCGCTATGGGACCTTTCGGCGTCTCTCTTCCACGGCACCAATATGTTTGTACCAGGATAATAATAGTCTCAGATACAATACCTGAAAAAAATGCAGGTGTTTTTTAAACATTTTCTAATTAGGAAAAAAGTTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAATCAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGYAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCATAACCGGTCGTCTGGGGCGTAACCTCTTCAAGCGCACACCCTCACCAAAAACTTCTTTTCATCTACTTCATCTTTCTTTTTCTAACGGTATATATTTTTGGTGTCAAACTGGTATTTGTTAGTGGCCTCATCTATAGGTTAGTACAGTTCATCTACTATAAATTCTCGATTCTCAAGAGGTCAGATGAATAGGAGAGGAGAAAGAGACAGAAAAAAAGAAAAAGAAAGGAAATGATGGATCACTCGTTCTTCTTTCCGCAATTTATCTTTATCACCTTCTTCACAACGATAATGACAGTTGGCGGTTGAGGTTTGGAAGATGTGCTTCTTAGATTGTTTTTCTGTTTTGAACTTTTTTTTTAAGTACCGTATTTCCGTCAAATTTCAAGCTCAATTATCTCGATTCTTGTGAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGCTAACCAAAGCTCGTATAG</pcr_primer_p1>
		<pcr_primer_p2>TGCAAATTTAGGTATCTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAATCAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCA</canonical_amplicon>
		<polymorphic_amplicon>TTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAATCAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGYAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36107</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>3820</contig_pos>
        <strand></strand>
        <context>TCTGAACCAA[T/C]TTTCTTRACA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAA</left_flank>
        <right_flank>TTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCATAACCG</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTAACTCGATCCTAGTTCGTTTTCGGTCAATTTTTTTTCACTTTATCAATTTTAGACGTGTTTGACGAAAAGCTTTCCGTCGATTTTTTTTTGTTTTTTTTTCCACAAAGTTAGTAAATCCAGAAAAGTTAGTAAATCCAGAAAAGTATTTTCAGGTTACGGTAGTTTTCGCTATGGGACCTTTCGGCGTCTCTCTTCCACGGCACCAATATGTTTGTACCAGGATAATAATAGTCTCAGATACAATACCTGAAAAAAATGCAGGTGTTTTTTAAACATTTTCTAATTAGGAAAAAAGTTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAATCAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCATAACCGGTCGTCTGGGGCGTAACCTCTTCAAGCGCACACCCTCACCAAAAACTTCTTTTCATCTACTTCATCTTTCTTTTTCTAACGGTATATATTTTTGGTGTCAAACTGGTATTTGTTAGTGGCCTCATCTATAGGTTAGTACAGTTCATCTACTATAAATTCTCGATTCTCAAGAGGTCAGATGAATAGGAGAGGAGAAAGAGACAGAAAAAAAGAAAAAGAAAGGAAATGATGGATCACTCGTTCTTCTTTCCGCAATTTATCTTTATCACCTTCTTCACAACGATAATGACAGTTGGCGGTTGAGGTTTGGAAGATGTGCTTCTTAGATTGTTTTTCTGTTTTGAACTTTTTTTTTAAGTACCGTATTTCCGTCAAATTTCAAGCTCAATTATCTCGATTCTTGTGAAAGTGTCTGTTTGTCAACTAATAAAATTTTTATCGCAATATCAA</canonical>
            <polymorphic>ATTAACTCGATCCTAGTTCGTTTTCGGTCAATTTTTTTTCACTTTATCAATTTTAGACGTGTTTGACGAAAAGCTTTCCGTCGATTTTTTTTTGTTTTTTTTTCCACAAAGTTAGTAAATCCAGAAAAGTTAGTAAATCCAGAAAAGTATTTTCAGGTTACGGTAGTTTTCGCTATGGGACCTTTCGGCGTCTCTCTTCCACGGCACCAATATGTTTGTACCAGGATAATAATAGTCTCAGATACAATACCTGAAAAAAATGCAGGTGTTTTTTAAACATTTTCTAATTAGGAAAAAAGTTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAATCAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAAYTTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCATAACCGGTCGTCTGGGGCGTAACCTCTTCAAGCGCACACCCTCACCAAAAACTTCTTTTCATCTACTTCATCTTTCTTTTTCTAACGGTATATATTTTTGGTGTCAAACTGGTATTTGTTAGTGGCCTCATCTATAGGTTAGTACAGTTCATCTACTATAAATTCTCGATTCTCAAGAGGTCAGATGAATAGGAGAGGAGAAAGAGACAGAAAAAAAGAAAAAGAAAGGAAATGATGGATCACTCGTTCTTCTTTCCGCAATTTATCTTTATCACCTTCTTCACAACGATAATGACAGTTGGCGGTTGAGGTTTGGAAGATGTGCTTCTTAGATTGTTTTTCTGTTTTGAACTTTTTTTTTAAGTACCGTATTTCCGTCAAATTTCAAGCTCAATTATCTCGATTCTTGTGAAAGTGTCTGTTTGTCAACTAATAAAATTTTTATCGCAATATCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>237 212 168 121 99 44 39 29 20 19 12</canonical_bands>
                <polymorphic_bands>251 237 168 121 99 44 29 20 19 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTGGCTCCTTCACTTTCT</pcr_primer_p1>
		<pcr_primer_p2>ATGAAAAGAAGTTTTTGGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>276</pcr_amplicon_size>
		<canonical_amplicon>ATCTGGCTCCTTCACTTTCTCCAAATCAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCATAACCGGTCGTCTGGGGCGTAACCTCTTCAAGCGCACACCCTCACCAAAAACTTCTTTTCAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTGGCTCCTTCACTTTCTCCAAATCAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAAYTTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCATAACCGGTCGTCTGGGGCGTAACCTCTTCAAGCGCACACCCTCACCAAAAACTTCTTTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36108</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>3827</contig_pos>
        <strand>+</strand>
        <context>CAAYTTTCTT[A/G]ACAACTTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTT</left_flank>
        <right_flank>ACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCATAACCGGTCGTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATCCTAGTTCGTTTTCGGTCAATTTTTTTTCACTTTATCAATTTTAGACGTGTTTGACGAAAAGCTTTCCGTCGATTTTTTTTTGTTTTTTTTTCCACAAAGTTAGTAAATCCAGAAAAGTTAGTAAATCCAGAAAAGTATTTTCAGGTTACGGTAGTTTTCGCTATGGGACCTTTCGGCGTCTCTCTTCCACGGCACCAATATGTTTGTACCAGGATAATAATAGTCTCAGATACAATACCTGAAAAAAATGCAGGTGTTTTTTAAACATTTTCTAATTAGGAAAAAAGTTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAATCAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCATAACCGGTCGTCTGGGGCGTAACCTCTTCAAGCGCACACCCTCACCAAAAACTTCTTTTCATCTACTTCATCTTTCTTTTTCTAACGGTATATATTTTTGGTGTCAAACTGGTATTTGTTAGTGGCCTCATCTATAGGTTAGTACAGTTCATCTACTATAAATTCTCGATTCTCAAGAGGTCAGATGAATAGGAGAGGAGAAAGAGACAGAAAAAAAGAAAAAGAAAGGAAATGATGGATCACTCGTTCTTCTTTCCGCAATTTATCTTTATCACCTTCTTCACAACGATAATGACAGTTGGCGGTTGAGGTTTGGAAGATGTGCTTCTTAGATTGTTTTTCTGTTTTGAACTTTTTTTTTAAGTACCGTATTTCCGTCAAATTTCAAGCTCAATTATCTCGATTCTTGTGAAAGTGTCTGTTTGTCAACTAATAAAATTTTTATCGCAATATCAATTATGTT</canonical>
            <polymorphic>CGATCCTAGTTCGTTTTCGGTCAATTTTTTTTCACTTTATCAATTTTAGACGTGTTTGACGAAAAGCTTTCCGTCGATTTTTTTTTGTTTTTTTTTCCACAAAGTTAGTAAATCCAGAAAAGTTAGTAAATCCAGAAAAGTATTTTCAGGTTACGGTAGTTTTCGCTATGGGACCTTTCGGCGTCTCTCTTCCACGGCACCAATATGTTTGTACCAGGATAATAATAGTCTCAGATACAATACCTGAAAAAAATGCAGGTGTTTTTTAAACATTTTCTAATTAGGAAAAAAGTTAGCTAACCAAAGCTCGTATAGCTCATTCCATCTGGCTCCTTCACTTTCTCCAAATCAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTRACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCATAACCGGTCGTCTGGGGCGTAACCTCTTCAAGCGCACACCCTCACCAAAAACTTCTTTTCATCTACTTCATCTTTCTTTTTCTAACGGTATATATTTTTGGTGTCAAACTGGTATTTGTTAGTGGCCTCATCTATAGGTTAGTACAGTTCATCTACTATAAATTCTCGATTCTCAAGAGGTCAGATGAATAGGAGAGGAGAAAGAGACAGAAAAAAAGAAAAAGAAAGGAAATGATGGATCACTCGTTCTTCTTTCCGCAATTTATCTTTATCACCTTCTTCACAACGATAATGACAGTTGGCGGTTGAGGTTTGGAAGATGTGCTTCTTAGATTGTTTTTCTGTTTTGAACTTTTTTTTTAAGTACCGTATTTCCGTCAAATTTCAAGCTCAATTATCTCGATTCTTGTGAAAGTGTCTGTTTGTCAACTAATAAAATTTTTATCGCAATATCAATTATGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>365 225 205 114 64 18 9</canonical_bands>
                <polymorphic_bands>570 225 114 64 18 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTGGCTCCTTCACTTTCT</pcr_primer_p1>
		<pcr_primer_p2>ATGAAAAGAAGTTTTTGGTGAG</pcr_primer_p2>
		<pcr_amplicon_size>276</pcr_amplicon_size>
		<canonical_amplicon>ATCTGGCTCCTTCACTTTCTCCAAATCAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTGACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCATAACCGGTCGTCTGGGGCGTAACCTCTTCAAGCGCACACCCTCACCAAAAACTTCTTTTCAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTGGCTCCTTCACTTTCTCCAAATCAGGGCGTGACCGTTAGTCTGACGGCGCCAGATGGTTATCTGTGCATGGGATCGACCCCTGGTTGGACCCATCTGTGTTTCCCAAGGGAAAGTAGACTTGTAGAAAAAAAAATGTATTCCATTTCCTTTAATCTCTGAACCAATTTTCTTRACAACTTTTCCCTTTTTTTGAGATACCTAAATTTGCATAACCGGTCGTCTGGGGCGTAACCTCTTCAAGCGCACACCCTCACCAAAAACTTCTTTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36109</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>9471</contig_pos>
        <strand>+</strand>
        <context>TCAAAAACTA[C/G]TACTCCAAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CATTCTTTCCGTTTGGATTTCTGTATAATTTCAATTTAACTCAAAAACTA</left_flank>
        <right_flank>TACTCCAAACCAACCCATATTTGGCGAAATTGGTTACCGTAGTCCCCATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGTTCTCAAAACTATTCCCCCACTCGAAATTTTCTATTGAACTAGATAATCCATTTTTGAAATGGAATCAATTGTTCATTCCCTCTTATATTTCATTTTCTAACTGATTTTGTCCTAATTTCTGTACACCTTGGGTCTTTCTGTTCTTTTCCTTTTCACCTGCTTGTTTCTACGTTTCGAAAACGCCCTTTTTAAATCTTCAAAATCCAAAATTTTCCAAACAAAATAAAAATTCAGATTTTGAGAGAAAGTTTTCATTTAACTAACACACAATTACAATTTATTTCCATACACAATTTCTTGATATTTCTTCCCACTCTTGTTGACTTCATCCAACGCTTTTAGTCTTCCATTTTGGAAATTATCTCTCATTTCACTCTTCGGATAGTCGATCTTGAAATATCTATCTGGATGATCTACGTTATACTTCTTCCAAATTTCCGGTACATTCTTTCCGTTTGGATTTCTGTATAATTTCAATTTAACTCAAAAACTACTACTCCAAACCAACCCATATTTGGCGAAATTGGTTACCGTAGTCCCCATAATATCCATCACTTTCAATTCCTCCTCAGTTGGACTGAATTTTCCCATTCCCTCTCCAACAATGAATTTTAACTCGGATCCGTGAGTGGCTGCCTTAAAAGCCAGCGTTGCTGCCATAGGAGGGTCGATTCCATCTTTGCAGTAGTAGTCGAACGAAGCCAAGTATACATTATTTCCGTATTTGGCACAGGATTTCGCAGTGTTCAATATACCAATGTTAAACCAGGCGTCCCCAACAAACTGAAAATTTAATAAAATCAAGTGTTATCAAATGCAGAATTTACTTACTTCAACAGTTCTTTTCATAACCGCATCCTTGTCTGTAGTGTCTACGTCTTTCATATAAAGCTCAACTAGCTTCTTTTTGTTTTCTTCAACATCATTCACCATGTCTTCCCCAAATAATAATGAGACAGTTTCGTTAAAGGGTTGTCCTTTTGGCACATTCATC</canonical>
            <polymorphic>AATTGTTCTCAAAACTATTCCCCCACTCGAAATTTTCTATTGAACTAGATAATCCATTTTTGAAATGGAATCAATTGTTCATTCCCTCTTATATTTCATTTTCTAACTGATTTTGTCCTAATTTCTGTACACCTTGGGTCTTTCTGTTCTTTTCCTTTTCACCTGCTTGTTTCTACGTTTCGAAAACGCCCTTTTTAAATCTTCAAAATCCAAAATTTTCCAAACAAAATAAAAATTCAGATTTTGAGAGAAAGTTTTCATTTAACTAACACACAATTACAATTTATTTCCATACACAATTTCTTGATATTTCTTCCCACTCTTGTTGACTTCATCCAACGCTTTTAGTCTTCCATTTTGGAAATTATCTCTCATTTCACTCTTCGGATAGTCGATCTTGAAATATCTATCTGGATGATCTACGTTATACTTCTTCCAAATTTCCGGTACATTCTTTCCGTTTGGATTTCTGTATAATTTCAATTTAACTCAAAAACTASTACTCCAAACCAACCCATATTTGGCGAAATTGGTTACCGTAGTCCCCATAATATCCATCACTTTCAATTCCTCCTCAGTTGGACTGAATTTTCCCATTCCCTCTCCAACAATGAATTTTAACTCGGATCCGTGAGTGGCTGCCTTAAAAGCCAGCGTTGCTGCCATAGGAGGGTCGATTCCATCTTTGCAGTAGTAGTCGAACGAAGCCAAGTATACATTATTTCCGTATTTGGCACAGGATTTCGCAGTGTTCAATATACCAATGTTAAACCAGGCGTCCCCAACAAACTGAAAATTTAATAAAATCAAGTGTTATCAAATGCAGAATTTACTTACTTCAACAGTTCTTTTCATAACCGCATCCTTGTCTGTAGTGTCTACGTCTTTCATATAAAGCTCAACTAGCTTCTTTTTGTTTTCTTCAACATCATTCACCATGTCTTCCCCAAATAATAATGAGACAGTTTCGTTAAAGGGTTGTCCTTTTGGCACATTCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTTCTTCCCACTCTTGTTG</pcr_primer_p1>
		<pcr_primer_p2>GATATTATGGGGACTACGGTAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATATTTCTTCCCACTCTTGTTGACTTCATCCAACGCTTTTAGTCTTCCATTTTGGAAATTATCTCTCATTTCACTCTTCGGATAGTCGATCTTGAAATATCTATCTGGATGATCTACGTTATACTTCTTCCAAATTTCCGGTACATTCTTTCCGTTTGGATTTCTGTATAATTTCAATTTAACTCAAAAACTACTACTCCAAACCAACCCATATTTGGCGAAATTGGTTACCGTAGTCCCCATAATATC</canonical_amplicon>
		<polymorphic_amplicon>ATATTTCTTCCCACTCTTGTTGACTTCATCCAACGCTTTTAGTCTTCCATTTTGGAAATTATCTCTCATTTCACTCTTCGGATAGTCGATCTTGAAATATCTATCTGGATGATCTACGTTATACTTCTTCCAAATTTCCGGTACATTCTTTCCGTTTGGATTTCTGTATAATTTCAATTTAACTCAAAAACTASTACTCCAAACCAACCCATATTTGGCGAAATTGGTTACCGTAGTCCCCATAATATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36110</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>13350</contig_pos>
        <strand>+</strand>
        <context>GGGCATCGTG[C/T]TCAAAGGGGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAATTTTAACTCATCGAAAATAGGCCCATACTCCCAGGGGGCATCGTG</left_flank>
        <right_flank>TCAAAGGGGGCATACACTCATAGGGGTCACTAACTCATAGGGGGCATCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAAGCCAGAAAGTCGACACTAGCCGCTCCTGCACTAGTTCCAAAAATAGAAACATTATCTGGATCTCCACCAAACGAGGCAATGTGTTCTTGAACCCATTTTAGAGCTAGTGTTTGATCCCACAATCCATAATTTCCTTTCGATACTTCATCTCCAGTTGTGAAAAATCCGAGTGGGCCTACACGATAGTTGGCAGTTACAACAATCAGTCCTTTGAGTGGTAACGTTTTGGATACATATAAGTCATCAATTGTTGAGGATGCTCCGATTTCAAATCCTCCTCCATAGAAGTAAACTATCACAGGTAAGCATTTTGTCTGGAAAACCGTAATATGCGACAGCTAGTGTACAATAACTCACAAATTCGGCAATCTTTGTTCTAGGAGCAAACACATTTAGGTTGAGGCAATTATCTTCGGTATAGTTTTGAGGTCCTGGTGATGAAACTAAAATTTTAACTCATCGAAAATAGGCCCATACTCCCAGGGGGCATCGTGCTCAAAGGGGGCATACACTCATAGGGGTCACTAACTCATAGGGGGCATCCTGAAATTGTCTTTTAGGGGGCATCCCACCATGTCTCATAGGGGGCATCGGACCAAATGCTCCCAGGGGGCATTGATAGTCTCATAGGTGTCATTGAGATCAATTTGAGTACATGATTCTGAATATGATGAATTTTTATTTTTACATCTTTTTCGTAGTTTTTTGAGGAAAACAAACACAATTGAAGACTATCGAAGGTGTTATTTCGGAGGGTCAACTGGGTAGAATTTCGGCCAATAGTTCGGGGGTACAATGATTCGGGATTACAACTCATTTCATTCAGGGGTACAATGCTTGTGATTCGGGGGTACAGTTTTTTTTGATGGAGTTTCTGAATTCCTGAATGTCAGAGCTTGAAAATTTCAGAATTCTTAGAATTTCAGAACTTCAGAGCCTGAGAATTTCAGAATGTTAGAATTTCAGAACTTCGAAATCGCAGAACTTCAGAATCT</canonical>
            <polymorphic>TCAAAGCCAGAAAGTCGACACTAGCCGCTCCTGCACTAGTTCCAAAAATAGAAACATTATCTGGATCTCCACCAAACGAGGCAATGTGTTCTTGAACCCATTTTAGAGCTAGTGTTTGATCCCACAATCCATAATTTCCTTTCGATACTTCATCTCCAGTTGTGAAAAATCCGAGTGGGCCTACACGATAGTTGGCAGTTACAACAATCAGTCCTTTGAGTGGTAACGTTTTGGATACATATAAGTCATCAATTGTTGAGGATGCTCCGATTTCAAATCCTCCTCCATAGAAGTAAACTATCACAGGTAAGCATTTTGTCTGGAAAACCGTAATATGCGACAGCTAGTGTACAATAACTCACAAATTCGGCAATCTTTGTTCTAGGAGCAAACACATTTAGGTTGAGGCAATTATCTTCGGTATAGTTTTGAGGTCCTGGTGATGAAACTAAAATTTTAACTCATCGAAAATAGGCCCATACTCCCAGGGGGCATCGTGYTCAAAGGGGGCATACACTCATAGGGGTCACTAACTCATAGGGGGCATCCTGAAATTGTCTTTTAGGGGGCATCCCACCATGTCTCATAGGGGGCATCGGACCAAATGCTCCCAGGGGGCATTGATAGTCTCATAGGTGTCATTGAGATCAATTTGAGTACATGATTCTGAATATGATGAATTTTTATTTTTACATCTTTTTCGTAGTTTTTTGAGGAAAACAAACACAATTGAAGACTATCGAAGGTGTTATTTCGGAGGGTCAACTGGGTAGAATTTCGGCCAATAGTTCGGGGGTACAATGATTCGGGATTACAACTCATTTCATTCAGGGGTACAATGCTTGTGATTCGGGGGTACAGTTTTTTTTGATGGAGTTTCTGAATTCCTGAATGTCAGAGCTTGAAAATTTCAGAATTCTTAGAATTTCAGAACTTCAGAGCCTGAGAATTTCAGAATGTTAGAATTTCAGAACTTCGAAATCGCAGAACTTCAGAATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGCAATTATCTTCGGTATAGTT</pcr_primer_p1>
		<pcr_primer_p2>GATCTCAATGACACCTATGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AGGCAATTATCTTCGGTATAGTTTTGAGGTCCTGGTGATGAAACTAAAATTTTAACTCATCGAAAATAGGCCCATACTCCCAGGGGGCATCGTGCTCAAAGGGGGCATACACTCATAGGGGTCACTAACTCATAGGGGGCATCCTGAAATTGTCTTTTAGGGGGCATCCCACCATGTCTCATAGGGGGCATCGGACCAAATGCTCCCAGGGGGCATTGATAGTCTCATAGGTGTCATTGAGATC</canonical_amplicon>
		<polymorphic_amplicon>AGGCAATTATCTTCGGTATAGTTTTGAGGTCCTGGTGATGAAACTAAAATTTTAACTCATCGAAAATAGGCCCATACTCCCAGGGGGCATCGTGYTCAAAGGGGGCATACACTCATAGGGGTCACTAACTCATAGGGGGCATCCTGAAATTGTCTTTTAGGGGGCATCCCACCATGTCTCATAGGGGGCATCGGACCAAATGCTCCCAGGGGGCATTGATAGTCTCATAGGTGTCATTGAGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36111</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>147738</contig_pos>
        <strand></strand>
        <context>ttatctcggt[T/C]ccttcaagag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCTAATAGTAGCTAACCAAACACGTGTAGTTTGAGTTCAATTATCTCGGT</left_flank>
        <right_flank>CCTTCAAGAGCTATCAAAAAGTGTCAACTGATAAAAGGTTGATCATAATA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTGAAAAAGAGAACACGAGGAAAGAAGAAGGACTAGACCCAGAACGTTCCAGCGTTTTCCAATTTTCCCACTCGTGCTCCTGGTGTCTCAAGAGAGAAAAAGGCTTTCAAAATGAGAATGTATTGATTCCATGAAACTTTGTTCTTCCTCAAATCAATCTTGACCGGTCATCTTTACTATAAAAGAAGTTATTTTTCAGATACGAGTAGAGTCACGGGGACCCCAATCACACATAATGGATCAATCGTTCCCGTCCTACGTGAACATTCCGCCAATAGCCAAAAGTGAGTATTTACTGCAAATCGTTGACAGGAAAAACTGAAAAGAAACTGTCTGAAAAAAATATTATCTTCAAATATGATATGATCTCTTTAGCTAAACTACGGTACGCTCAAAAAAGTTTTATTCAAAAGAATGACTTTGAAGTAATTTCCATCGTAAGAAAGGATCTAATAGTAGCTAACCAAACACGTGTAGTTTGAGTTCAATTATCTCGGTTCCTTCAAGAGCTATCAAAAAGTGTCAACTGATAAAAGGTTGATCATAATATTACCAACATTTTATCAGTTTACAAAATTTTTATATCTTTGATGTTAATCGAGATAATTGAGCTCAAAGTGCACGCATATGGTGGGCTTTATCGTATAGAGCGGGTTTCAGCACTTACGGTATATCGGGATTTCTAGATTCTCCAGGTCTTCTGTTTGGATTACTGAACCAATTATGAAAAGCAGGCACCTGGTCCGAGTCCAAAAGAAGAGTCACTCTGAAATCGTTTATTCTGTAATTTATTTTCTTGCCGACTTATTTTGAAAATCTTTGATCTTTTTTCTAGAAACTACTCCTTATCTAACATCAAATTCAGATTAATGTGTAACTGTAAATATCCAGAAAAATAGTATTTTTTAACTGAAAAAATGTTGTTGTTTATATCAAACTTCTACGTCAGTCCCTGCCGAAAATCGTTTAGAATTAGATTCAGATTACCTAGAACACCGA</canonical>
            <polymorphic>CGTGAAAAAGAGAACACGAGGAAAGAAGAAGGACTAGACCCAGAACGTTCCAGCGTTTTCCAATTTTCCCACTCGTGCTCCTGGTGTCTCAAGAGAGAAAAAGGCTTTCAAAATGAGAATGTATTGATTCCATGAAACTTTGTTCTTCCTCAAATCAATCTTGACCGGTCATCTTTACTATAAAAGAAGTTATTTTTCAGATACGAGTAGAGTCACGGGGACCCCAATCACACATAATGGATCAATCGTTCCCGTCCTACGTGAACATTCCGCCAATAGCCAAAAGTGAGTATTTACTGCAAATCGTTGACAGGAAAAACTGAAAAGAAACTGTCTGAAAAAAATATTATCTTCAAATATGATATGATCTCTTTAGCTAAACTACGGTACGCTCAAAAAAGTTTTATTCAAAAGAATGACTTTGAAGTAATTTCCATCGTAAGAAAGGATCTAATAGTAGCTAACCAAACACGTGTAGTTTGAGTTCAATTATCTCGGTYCCTTCAAGAGCTATCAAAAAGTGTCAACTGATAAAAGGTTGATCATAATATTACCAACATTTTATCAGTTTACAAAATTTTTATATCTTTGATGTTAATCGAGATAATTGAGCTCAAAGTGCACGCATATGGTGGGCTTTATCGTATAGAGCGGGTTTCAGCACTTACGGTATATCGGGATTTCTAGATTCTCCAGGTCTTCTGTTTGGATTACTGAACCAATTATGAAAAGCAGGCACCTGGTCCGAGTCCAAAAGAAGAGTCACTCTGAAATCGTTTATTCTGTAATTTATTTTCTTGCCGACTTATTTTGAAAATCTTTGATCTTTTTTCTAGAAACTACTCCTTATCTAACATCAAATTCAGATTAATGTGTAACTGTAAATATCCAGAAAAATAGTATTTTTTAACTGAAAAAATGTTGTTGTTTATATCAAACTTCTACGTCAGTCCCTGCCGAAAATCGTTTAGAATTAGATTCAGATTACCTAGAACACCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATTTCCATCGTAAGAAAGGAT</pcr_primer_p1>
		<pcr_primer_p2>CGATATACCGTAAGTGCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAATTTCCATCGTAAGAAAGGATCTAATAGTAGCTAACCAAACACGTGTAGTTTGAGTTCAATTATCTCGGTTCCTTCAAGAGCTATCAAAAAGTGTCAACTGATAAAAGGTTGATCATAATATTACCAACATTTTATCAGTTTACAAAATTTTTATATCTTTGATGTTAATCGAGATAATTGAGCTCAAAGTGCACGCATATGGTGGGCTTTATCGTATAGAGCGGGTTTCAGCACTTACGGTATATCG</canonical_amplicon>
		<polymorphic_amplicon>TAATTTCCATCGTAAGAAAGGATCTAATAGTAGCTAACCAAACACGTGTAGTTTGAGTTCAATTATCTCGGTYCCTTCAAGAGCTATCAAAAAGTGTCAACTGATAAAAGGTTGATCATAATATTACCAACATTTTATCAGTTTACAAAATTTTTATATCTTTGATGTTAATCGAGATAATTGAGCTCAAAGTGCACGCATATGGTGGGCTTTATCGTATAGAGCGGGTTTCAGCACTTACGGTATATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36112</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>174182</contig_pos>
        <strand>+</strand>
        <context>AACGACTCCA[A/G]GACCTATTGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGCAAAATATCAAGACGCCGAAGAGATGAGATTCTGGTCAACGACTCCA</left_flank>
        <right_flank>GACCTATTGCTGCTGAAAACCCGTTTAATCTGGATAACATTGGAAATGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTTATGGGAATCACGAGAACAGTATACTTTTTTGTTGTTGACCAAGAAAAGAGGAGCGCATATGAATTCTATCTCTCCCGCTTTCAGTTTCTTTCCATCTCTGGAAATAATAAAAAAACGGTTTTGCGAATAATCGATCAGCGATGAAAAGATGCGAACGAAGAAAAAAAAACAATAGAGATGGGGAGAGGAAAAAGAGAAATAAGTATTATCACCCACCCGTGCATTCCATTTTTTCTGTCTTCTCTTCTCTCCCATTTTGAATCTCTTCTCCTTTTCTCTCCCGATGATTTCCCTATCTCTCTAATTTTAACTGTATTTTCATCCCTTGTCAAAACAAATAGAAACGAAAACAATGTGCCATACTCTCTCGTACTATCTACTATCAGTTTCAGATGGTCGACGACGTGTTTCGATTGAAACGGAGTATGCTCTACGCAACGTTCTACGCAAAATATCAAGACGCCGAAGAGATGAGATTCTGGTCAACGACTCCAGGACCTATTGCTGCTGAAAACCCGTTTAATCTGGATAACATTGGAAATGGTTACGGTAAGTGCAGTTCAGCAAAGTTTCAAGTCTCTGAGGAGCTGACGGGGTTATAAGATCTGTAGTTCCTTATTTCAGATCTATTTCTAGAGATTGATGCCTAAGCTATTGCCATTGAAATTTCGGCGAAGTATTTTGAAAGTAAAACTGGCTCGAATGCAGTGATAGTATCGTTCAATAAGATTACGAAAAGTTTCAGTTGATTTTCGGCCATTTTGACCATTTTCAGGAGTCTATAGCTCGGCTGTCAAGCTTTCGATCACTTTGAAATTTTTGGAAAGTATAAAATAGTCCTAGATTGAAAACTTTGCATTCATTGTTTTTTTTTGAAAATCCCTCGCTTTTCAGCTATTTGCTGATTTCTGAAACACGACTATTTTTTACTGTTTTTGTACTGAAAATGTGAAAAAAACTAGTGCCTTTAGAAATCGGCAAATAGTTGAAAAGGT</canonical>
            <polymorphic>GGTTTATGGGAATCACGAGAACAGTATACTTTTTTGTTGTTGACCAAGAAAAGAGGAGCGCATATGAATTCTATCTCTCCCGCTTTCAGTTTCTTTCCATCTCTGGAAATAATAAAAAAACGGTTTTGCGAATAATCGATCAGCGATGAAAAGATGCGAACGAAGAAAAAAAAACAATAGAGATGGGGAGAGGAAAAAGAGAAATAAGTATTATCACCCACCCGTGCATTCCATTTTTTCTGTCTTCTCTTCTCTCCCATTTTGAATCTCTTCTCCTTTTCTCTCCCGATGATTTCCCTATCTCTCTAATTTTAACTGTATTTTCATCCCTTGTCAAAACAAATAGAAACGAAAACAATGTGCCATACTCTCTCGTACTATCTACTATCAGTTTCAGATGGTCGACGACGTGTTTCGATTGAAACGGAGTATGCTCTACGCAACGTTCTACGCAAAATATCAAGACGCCGAAGAGATGAGATTCTGGTCAACGACTCCARGACCTATTGCTGCTGAAAACCCGTTTAATCTGGATAACATTGGAAATGGTTACGGTAAGTGCAGTTCAGCAAAGTTTCAAGTCTCTGAGGAGCTGACGGGGTTATAAGATCTGTAGTTCCTTATTTCAGATCTATTTCTAGAGATTGATGCCTAAGCTATTGCCATTGAAATTTCGGCGAAGTATTTTGAAAGTAAAACTGGCTCGAATGCAGTGATAGTATCGTTCAATAAGATTACGAAAAGTTTCAGTTGATTTTCGGCCATTTTGACCATTTTCAGGAGTCTATAGCTCGGCTGTCAAGCTTTCGATCACTTTGAAATTTTTGGAAAGTATAAAATAGTCCTAGATTGAAAACTTTGCATTCATTGTTTTTTTTTGAAAATCCCTCGCTTTTCAGCTATTTGCTGATTTCTGAAACACGACTATTTTTTACTGTTTTTGTACTGAAAATGTGAAAAAAACTAGTGCCTTTAGAAATCGGCAAATAGTTGAAAAGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AGGWCCT</site>
                <isoschizomers>
                    <enzyme>Sse8647I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGAAACGGAGTATGCTCTAC</pcr_primer_p1>
		<pcr_primer_p2>CAATAGCTTAGGCATCAATCTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATTGAAACGGAGTATGCTCTACGCAACGTTCTACGCAAAATATCAAGACGCCGAAGAGATGAGATTCTGGTCAACGACTCCAGGACCTATTGCTGCTGAAAACCCGTTTAATCTGGATAACATTGGAAATGGTTACGGTAAGTGCAGTTCAGCAAAGTTTCAAGTCTCTGAGGAGCTGACGGGGTTATAAGATCTGTAGTTCCTTATTTCAGATCTATTTCTAGAGATTGATGCCTAAGCTATTG</canonical_amplicon>
		<polymorphic_amplicon>ATTGAAACGGAGTATGCTCTACGCAACGTTCTACGCAAAATATCAAGACGCCGAAGAGATGAGATTCTGGTCAACGACTCCARGACCTATTGCTGCTGAAAACCCGTTTAATCTGGATAACATTGGAAATGGTTACGGTAAGTGCAGTTCAGCAAAGTTTCAAGTCTCTGAGGAGCTGACGGGGTTATAAGATCTGTAGTTCCTTATTTCAGATCTATTTCTAGAGATTGATGCCTAAGCTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36113</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>185859</contig_pos>
        <strand>+</strand>
        <context>TGCTTCCGAT[A/G]CTTGTGTAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGCGCGGAACAGCCGATGGGTTCAGTTCTGTGAACTTCGTGCTTCCGAT</left_flank>
        <right_flank>CTTGTGTAAGTTGAAGAAATTCTTCTATATTCTATCCTAATACCTTCCAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAATAAAACATTTTGATCGGAGCCCCCCTTTTAAACTTTTGATTTTATGGATTTCGTTTGGAAAATTTTTTCTCTAGCCATCTACTTGCTCAGAGTTTGTGTGACATCTGAACAACTGTCGTAATTGCACTTTTTCATTTTCTCTTTATTGATTAAATTTCTAACCCAAAAGTCTCATGGAATCTTTCATCTCATCACTCTTAATTTTTTTGTACCCGACGACGCACCGCCCATGTCACATTCCTGTCTAATTCGAACGCACTAATTGAATTTTCAACTGCCCTCAGTCTTTCATCGTTTTTTATTGCATTATTTTTTCGTATCAGTTGGGTCACCGTCTACCTTTTCTAATTTTTCAGAAATGCTCCTTCAAATCTTCACGGTTTGGCTCGGAGTCTTCTCCATCGGCTTCACCTTCCTTCCAATGTTCATGGTGCTCGACTGGAAAAAGCGCGGAACAGCCGATGGGTTCAGTTCTGTGAACTTCGTGCTTCCGATACTTGTGTAAGTTGAAGAAATTCTTCTATATTCTATCCTAATACCTTCCAGACAATCTTTCTGGCTTCGCCACGGATTGATGACAAACGACCAGACAAACATCATCATCAACTCCATCAACTTGGTTTTCTTTGCCTTTTACGTATCAGCGTTTGCCTACTATCAACCAAAGAGGGTAAGTGGGCAGCTGGAGAAGGAATGGTCATAGATAAAAATTGGAAGAAAAGTGAAAATTTGAAACTATGATTAAGAAGTGAAAACGAAAGTTCTGTGTTTTGTATGTTGTAGCTCGGACACAGAAAAATGTGTGAGTCTTTATAAGTACAAAATGAGCGGTTTCGAGTATTAAAAATTGGCTATCAAAAAATAGAAGAGTCTCGGCTTTCGGTTTATAACTGGTCCGAAGTTGAGGGGGATGTATAGCGGGTCATGATCAGATTTTGGGAGCTTAATTCGTAGGGTACACCGATTCGGGGGTACAACAGGGTACAAAGTTATTTA</canonical>
            <polymorphic>GCAATAAAACATTTTGATCGGAGCCCCCCTTTTAAACTTTTGATTTTATGGATTTCGTTTGGAAAATTTTTTCTCTAGCCATCTACTTGCTCAGAGTTTGTGTGACATCTGAACAACTGTCGTAATTGCACTTTTTCATTTTCTCTTTATTGATTAAATTTCTAACCCAAAAGTCTCATGGAATCTTTCATCTCATCACTCTTAATTTTTTTGTACCCGACGACGCACCGCCCATGTCACATTCCTGTCTAATTCGAACGCACTAATTGAATTTTCAACTGCCCTCAGTCTTTCATCGTTTTTTATTGCATTATTTTTTCGTATCAGTTGGGTCACCGTCTACCTTTTCTAATTTTTCAGAAATGCTCCTTCAAATCTTCACGGTTTGGCTCGGAGTCTTCTCCATCGGCTTCACCTTCCTTCCAATGTTCATGGTGCTCGACTGGAAAAAGCGCGGAACAGCCGATGGGTTCAGTTCTGTGAACTTCGTGCTTCCGATRCTTGTGTAAGTTGAAGAAATTCTTCTATATTCTATCCTAATACCTTCCAGACAATCTTTCTGGCTTCGCCACGGATTGATGACAAACGACCAGACAAACATCATCATCAACTCCATCAACTTGGTTTTCTTTGCCTTTTACGTATCAGCGTTTGCCTACTATCAACCAAAGAGGGTAAGTGGGCAGCTGGAGAAGGAATGGTCATAGATAAAAATTGGAAGAAAAGTGAAAATTTGAAACTATGATTAAGAAGTGAAAACGAAAGTTCTGTGTTTTGTATGTTGTAGCTCGGACACAGAAAAATGTGTGAGTCTTTATAAGTACAAAATGAGCGGTTTCGAGTATTAAAAATTGGCTATCAAAAAATAGAAGAGTCTCGGCTTTCGGTTTATAACTGGTCCGAAGTTGAGGGGGATGTATAGCGGGTCATGATCAGATTTTGGGAGCTTAATTCGTAGGGTACACCGATTCGGGGGTACAACAGGGTACAAAGTTATTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGCTCCTTCAAATCTTCAC</pcr_primer_p1>
		<pcr_primer_p2>AGTTGATGATGATGTTTGTCTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATGCTCCTTCAAATCTTCACGGTTTGGCTCGGAGTCTTCTCCATCGGCTTCACCTTCCTTCCAATGTTCATGGTGCTCGACTGGAAAAAGCGCGGAACAGCCGATGGGTTCAGTTCTGTGAACTTCGTGCTTCCGATACTTGTGTAAGTTGAAGAAATTCTTCTATATTCTATCCTAATACCTTCCAGACAATCTTTCTGGCTTCGCCACGGATTGATGACAAACGACCAGACAAACATCATCATCAACT</canonical_amplicon>
		<polymorphic_amplicon>AATGCTCCTTCAAATCTTCACGGTTTGGCTCGGAGTCTTCTCCATCGGCTTCACCTTCCTTCCAATGTTCATGGTGCTCGACTGGAAAAAGCGCGGAACAGCCGATGGGTTCAGTTCTGTGAACTTCGTGCTTCCGATRCTTGTGTAAGTTGAAGAAATTCTTCTATATTCTATCCTAATACCTTCCAGACAATCTTTCTGGCTTCGCCACGGATTGATGACAAACGACCAGACAAACATCATCATCAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36114</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>247662</contig_pos>
        <strand>+</strand>
        <context>TCTATTACAA[A/G]GGAAAGAAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCATCACCTTGGTTTTGTTCATAAGTTTAATCTTACTTTTCTATTACAA</left_flank>
        <right_flank>GGAAAGAAGCAAAAGAGTGATACCAGAAAAATTATGAAGCGTCTAAAAGT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGAGTTTATCTCATGACGATTTCCAAAAATCAAACTGATTCTTCATTTTCAGCGTATCTTCAATGTGCACTCTGCTTCTCCCACATCATCTGCCTCTCATTCGAACTTCCAAACGCTGGCCTTCTGTTCACCGGAATCCAGTTGAAACGAAATCAATGTTTTCCGGCAATATCCATTTACATTTTTTTTATTTGTGCTCAAGCCGTGATTATCCTTATGATGACCCTCGACATTTTTATAATCGTTTTCTTTCCTGCATTCTATCAAACAGTGACTACCTGGAAGTACCTCACTGGGATGCTCACGATCCCTGTCGTCTACTCTTCTGGAATCGTAATCTGGGGATTCCTGGCTATGGACGATGAAATCGTGATGTTCTGTAACCCACCACTTGCTCTCTATCATACAGTATCCCGTTTTTGGACATTTTCCAACGTCATTATCAATACCATCACCTTGGTTTTGTTCATAAGTTTAATCTTACTTTTCTATTACAAAGGAAAGAAGCAAAAGAGTGATACCAGAAAAATTATGAAGCGTCTAAAAGTGTCTATCCTATTTTTCATCTTCACCTGGTACATAGGTTTACTGGCTGCAGACTTGTTCGTGGCTCTCGGCTTCACGGGGCCTACATTAATTTTCATGATGAGCAATTTGGTATTTCACAGAGAGTCAAAAATATATTCGTTTCGTTATTTTTTTAGGTTTTCTTTGTCCTGATCTCCTATTCTCAATTCTTCTACGTTGTCATTTGGAGATCTCCAGAATACCGAAACGCATTCTTTGAAGCATGGAGTTGTATTCCTTGCTGCGCAGGTCTCAAGGAAAAACACATTATGTCTACAAAAATATCGGCCACTGCTCATTCCCATCAAGCAGCGTCAACAGTTTCTTCAACATAATAATTCAAATTCGAACATTTTATTTGGATCATTCAATACTTTTTTGACAATTTCTTCTAATCCCATTTTGACCCGTAATAAAAAAAACTTGAGAAT</canonical>
            <polymorphic>TGTGAGTTTATCTCATGACGATTTCCAAAAATCAAACTGATTCTTCATTTTCAGCGTATCTTCAATGTGCACTCTGCTTCTCCCACATCATCTGCCTCTCATTCGAACTTCCAAACGCTGGCCTTCTGTTCACCGGAATCCAGTTGAAACGAAATCAATGTTTTCCGGCAATATCCATTTACATTTTTTTTATTTGTGCTCAAGCCGTGATTATCCTTATGATGACCCTCGACATTTTTATAATCGTTTTCTTTCCTGCATTCTATCAAACAGTGACTACCTGGAAGTACCTCACTGGGATGCTCACGATCCCTGTCGTCTACTCTTCTGGAATCGTAATCTGGGGATTCCTGGCTATGGACGATGAAATCGTGATGTTCTGTAACCCACCACTTGCTCTCTATCATACAGTATCCCGTTTTTGGACATTTTCCAACGTCATTATCAATACCATCACCTTGGTTTTGTTCATAAGTTTAATCTTACTTTTCTATTACAARGGAAAGAAGCAAAAGAGTGATACCAGAAAAATTATGAAGCGTCTAAAAGTGTCTATCCTATTTTTCATCTTCACCTGGTACATAGGTTTACTGGCTGCAGACTTGTTCGTGGCTCTCGGCTTCACGGGGCCTACATTAATTTTCATGATGAGCAATTTGGTATTTCACAGAGAGTCAAAAATATATTCGTTTCGTTATTTTTTTAGGTTTTCTTTGTCCTGATCTCCTATTCTCAATTCTTCTACGTTGTCATTTGGAGATCTCCAGAATACCGAAACGCATTCTTTGAAGCATGGAGTTGTATTCCTTGCTGCGCAGGTCTCAAGGAAAAACACATTATGTCTACAAAAATATCGGCCACTGCTCATTCCCATCAAGCAGCGTCAACAGTTTCTTCAACATAATAATTCAAATTCGAACATTTTATTTGGATCATTCAATACTTTTTTGACAATTTCTTCTAATCCCATTTTGACCCGTAATAAAAAAAACTTGAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACGTCATTATCAATACCATCAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGACTCTCTGTGAAATACC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AACGTCATTATCAATACCATCACCTTGGTTTTGTTCATAAGTTTAATCTTACTTTTCTATTACAAAGGAAAGAAGCAAAAGAGTGATACCAGAAAAATTATGAAGCGTCTAAAAGTGTCTATCCTATTTTTCATCTTCACCTGGTACATAGGTTTACTGGCTGCAGACTTGTTCGTGGCTCTCGGCTTCACGGGGCCTACATTAATTTTCATGATGAGCAATTTGGTATTTCACAGAGAGTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AACGTCATTATCAATACCATCACCTTGGTTTTGTTCATAAGTTTAATCTTACTTTTCTATTACAARGGAAAGAAGCAAAAGAGTGATACCAGAAAAATTATGAAGCGTCTAAAAGTGTCTATCCTATTTTTCATCTTCACCTGGTACATAGGTTTACTGGCTGCAGACTTGTTCGTGGCTCTCGGCTTCACGGGGCCTACATTAATTTTCATGATGAGCAATTTGGTATTTCACAGAGAGTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36115</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>262780</contig_pos>
        <strand>+</strand>
        <context>TTGACMWATC[C/T]AGGCACAMTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATC</left_flank>
        <right_flank>AGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGAATAGTGGGTACTCTGAAATAATGAGTGGTTGTGAAGGACAGTCCTGACGGGACCTTTCAATTAGAAGGTTAGAGGAGCCTTCTTATTTCTTCGGCTAGTTTCACGAAAACTTCAATTTTGAAAAATTGGTGAATTCTCGTTCACTATTGATGAAAAACCACAACTTTCATTAAAACTGGGAAAGTTTTTTAAGCCAATAAGAGTGCTTTAACAAAATTTGGTAAAGTTGTGGAATTCCCGGAATATTTTTCACAGAAATTTTTAATTTCAAACAACACACTTTGAAAAGTGCCCCTCTATTTCTGGGACCCAATCAAAAAACCAATCGTTCTAGTTCCGGCACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGAAAGAGCCACGTGTGCAAGATACTAAACAGAAATGCTGTTTATCAAAAATTTATGAAAGACCTACTTGAAAATAATTAAAACTATTTCGATTTTGAAAATCAATGAGATCATAGGCCATTGATCAGTATCCTGCTCGAAGTAGGTTCGATTGAAATAATGCATCAGAATCATATTGAATCGTAAGTTGTTGAATGAGCAACCAAAACATATATGAGCTGCCTTTTACAAATAATTACGTCTCTGATTCTCTATCATGTTCAGACAGCAGAATGTCTCTAGAGAACAACCAGTCTAGTTTATTCATAAAACAGGTTTTGAGCACATGACAAGAGTGTTCTAACTAGTTGATAGGGAAGCAAAATGAGTGTAAACAAATATACAATAGCAATTAATTAGTTAGCTCCT</canonical>
            <polymorphic>ACAGAATAGTGGGTACTCTGAAATAATGAGTGGTTGTGAAGGACAGTCCTGACGGGACCTTTCAATTAGAAGGTTAGAGGAGCCTTCTTATTTCTTCGGCTAGTTTCACGAAAACTTCAATTTTGAAAAATTGGTGAATTCTCGTTCACTATTGATGAAAAACCACAACTTTCATTAAAACTGGGAAAGTTTTTTAAGCCAATAAGAGTGCTTTAACAAAATTTGGTAAAGTTGTGGAATTCCCGGAATATTTTTCACAGAAATTTTTAATTTCAAACAACACACTTTGAAAAGTGCCCCTCTATTTCTGGGACCCAATCAAAAAACCAATCGTTCTAGTTCCGGCACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCYAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGAAAGAGCCACGTGTGCAAGATACTAAACAGAAATGCTGTTTATCAAAAATTTATGAAAGACCTACTTGAAAATAATTAAAACTATTTCGATTTTGAAAATCAATGAGATCATAGGCCATTGATCAGTATCCTGCTCGAAGTAGGTTCGATTGAAATAATGCATCAGAATCATATTGAATCGTAAGTTGTTGAATGAGCAACCAAAACATATATGAGCTGCCTTTTACAAATAATTACGTCTCTGATTCTCTATCATGTTCAGACAGCAGAATGTCTCTAGAGAACAACCAGTCTAGTTTATTCATAAAACAGGTTTTGAGCACATGACAAGAGTGTTCTAACTAGTTGATAGGGAAGCAAAATGAGTGTAAACAAATATACAATAGCAATTAATTAGTTAGCTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>372 236 163 100 64 49 16</canonical_bands>
                <polymorphic_bands>535 236 100 64 49 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACAAAATATTGTTTTCCTTGAC</pcr_primer_p1>
		<pcr_primer_p2>TCACTGGATCAATCTGAAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGA</canonical_amplicon>
		<polymorphic_amplicon>CACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCYAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36116</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>262815</contig_pos>
        <strand>+</strand>
        <context>GAATGTAAAG[A/G]ATGMTCATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAG</left_flank>
        <right_flank>ATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGAAGGACAGTCCTGACGGGACCTTTCAATTAGAAGGTTAGAGGAGCCTTCTTATTTCTTCGGCTAGTTTCACGAAAACTTCAATTTTGAAAAATTGGTGAATTCTCGTTCACTATTGATGAAAAACCACAACTTTCATTAAAACTGGGAAAGTTTTTTAAGCCAATAAGAGTGCTTTAACAAAATTTGGTAAAGTTGTGGAATTCCCGGAATATTTTTCACAGAAATTTTTAATTTCAAACAACACACTTTGAAAAGTGCCCCTCTATTTCTGGGACCCAATCAAAAAACCAATCGTTCTAGTTCCGGCACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGAAAGAGCCACGTGTGCAAGATACTAAACAGAAATGCTGTTTATCAAAAATTTATGAAAGACCTACTTGAAAATAATTAAAACTATTTCGATTTTGAAAATCAATGAGATCATAGGCCATTGATCAGTATCCTGCTCGAAGTAGGTTCGATTGAAATAATGCATCAGAATCATATTGAATCGTAAGTTGTTGAATGAGCAACCAAAACATATATGAGCTGCCTTTTACAAATAATTACGTCTCTGATTCTCTATCATGTTCAGACAGCAGAATGTCTCTAGAGAACAACCAGTCTAGTTTATTCATAAAACAGGTTTTGAGCACATGACAAGAGTGTTCTAACTAGTTGATAGGGAAGCAAAATGAGTGTAAACAAATATACAATAGCAATTAATTAGTTAGCTCCTGCTTTTCGGGATCCACTTTGATTTCCACTTGGTTC</canonical>
            <polymorphic>GTGAAGGACAGTCCTGACGGGACCTTTCAATTAGAAGGTTAGAGGAGCCTTCTTATTTCTTCGGCTAGTTTCACGAAAACTTCAATTTTGAAAAATTGGTGAATTCTCGTTCACTATTGATGAAAAACCACAACTTTCATTAAAACTGGGAAAGTTTTTTAAGCCAATAAGAGTGCTTTAACAAAATTTGGTAAAGTTGTGGAATTCCCGGAATATTTTTCACAGAAATTTTTAATTTCAAACAACACACTTTGAAAAGTGCCCCTCTATTTCTGGGACCCAATCAAAAAACCAATCGTTCTAGTTCCGGCACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGRATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGAAAGAGCCACGTGTGCAAGATACTAAACAGAAATGCTGTTTATCAAAAATTTATGAAAGACCTACTTGAAAATAATTAAAACTATTTCGATTTTGAAAATCAATGAGATCATAGGCCATTGATCAGTATCCTGCTCGAAGTAGGTTCGATTGAAATAATGCATCAGAATCATATTGAATCGTAAGTTGTTGAATGAGCAACCAAAACATATATGAGCTGCCTTTTACAAATAATTACGTCTCTGATTCTCTATCATGTTCAGACAGCAGAATGTCTCTAGAGAACAACCAGTCTAGTTTATTCATAAAACAGGTTTTGAGCACATGACAAGAGTGTTCTAACTAGTTGATAGGGAAGCAAAATGAGTGTAAACAAATATACAATAGCAATTAATTAGTTAGCTCCTGCTTTTCGGGATCCACTTTGATTTCCACTTGGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAAAATATTGTTTTCCTTGAC</pcr_primer_p1>
		<pcr_primer_p2>TCACTGGATCAATCTGAAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGA</canonical_amplicon>
		<polymorphic_amplicon>CACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGRATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36117</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>262819</contig_pos>
        <strand>+</strand>
        <context>GTAAAGRATG[A/C]TCATAATGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATG</left_flank>
        <right_flank>TCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGACAGTCCTGACGGGACCTTTCAATTAGAAGGTTAGAGGAGCCTTCTTATTTCTTCGGCTAGTTTCACGAAAACTTCAATTTTGAAAAATTGGTGAATTCTCGTTCACTATTGATGAAAAACCACAACTTTCATTAAAACTGGGAAAGTTTTTTAAGCCAATAAGAGTGCTTTAACAAAATTTGGTAAAGTTGTGGAATTCCCGGAATATTTTTCACAGAAATTTTTAATTTCAAACAACACACTTTGAAAAGTGCCCCTCTATTTCTGGGACCCAATCAAAAAACCAATCGTTCTAGTTCCGGCACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGAAAGAGCCACGTGTGCAAGATACTAAACAGAAATGCTGTTTATCAAAAATTTATGAAAGACCTACTTGAAAATAATTAAAACTATTTCGATTTTGAAAATCAATGAGATCATAGGCCATTGATCAGTATCCTGCTCGAAGTAGGTTCGATTGAAATAATGCATCAGAATCATATTGAATCGTAAGTTGTTGAATGAGCAACCAAAACATATATGAGCTGCCTTTTACAAATAATTACGTCTCTGATTCTCTATCATGTTCAGACAGCAGAATGTCTCTAGAGAACAACCAGTCTAGTTTATTCATAAAACAGGTTTTGAGCACATGACAAGAGTGTTCTAACTAGTTGATAGGGAAGCAAAATGAGTGTAAACAAATATACAATAGCAATTAATTAGTTAGCTCCTGCTTTTCGGGATCCACTTTGATTTCCACTTGGTTCGGCT</canonical>
            <polymorphic>AGGACAGTCCTGACGGGACCTTTCAATTAGAAGGTTAGAGGAGCCTTCTTATTTCTTCGGCTAGTTTCACGAAAACTTCAATTTTGAAAAATTGGTGAATTCTCGTTCACTATTGATGAAAAACCACAACTTTCATTAAAACTGGGAAAGTTTTTTAAGCCAATAAGAGTGCTTTAACAAAATTTGGTAAAGTTGTGGAATTCCCGGAATATTTTTCACAGAAATTTTTAATTTCAAACAACACACTTTGAAAAGTGCCCCTCTATTTCTGGGACCCAATCAAAAAACCAATCGTTCTAGTTCCGGCACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGMTCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGAAAGAGCCACGTGTGCAAGATACTAAACAGAAATGCTGTTTATCAAAAATTTATGAAAGACCTACTTGAAAATAATTAAAACTATTTCGATTTTGAAAATCAATGAGATCATAGGCCATTGATCAGTATCCTGCTCGAAGTAGGTTCGATTGAAATAATGCATCAGAATCATATTGAATCGTAAGTTGTTGAATGAGCAACCAAAACATATATGAGCTGCCTTTTACAAATAATTACGTCTCTGATTCTCTATCATGTTCAGACAGCAGAATGTCTCTAGAGAACAACCAGTCTAGTTTATTCATAAAACAGGTTTTGAGCACATGACAAGAGTGTTCTAACTAGTTGATAGGGAAGCAAAATGAGTGTAAACAAATATACAATAGCAATTAATTAGTTAGCTCCTGCTTTTCGGGATCCACTTTGATTTCCACTTGGTTCGGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>498 325 177</canonical_bands>
                <polymorphic_bands>675 325</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>498 295 115 48 30 14</canonical_bands>
                <polymorphic_bands>546 295 115 30 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACAAAATATTGTTTTCCTTGAC</pcr_primer_p1>
		<pcr_primer_p2>TCACTGGATCAATCTGAAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGA</canonical_amplicon>
		<polymorphic_amplicon>CACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGMTCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36118</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>262833</contig_pos>
        <strand>+</strand>
        <context>TAATGCTTGC[A/C]CAATTATTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGC</left_flank>
        <right_flank>CAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGAAAGAGCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGACCTTTCAATTAGAAGGTTAGAGGAGCCTTCTTATTTCTTCGGCTAGTTTCACGAAAACTTCAATTTTGAAAAATTGGTGAATTCTCGTTCACTATTGATGAAAAACCACAACTTTCATTAAAACTGGGAAAGTTTTTTAAGCCAATAAGAGTGCTTTAACAAAATTTGGTAAAGTTGTGGAATTCCCGGAATATTTTTCACAGAAATTTTTAATTTCAAACAACACACTTTGAAAAGTGCCCCTCTATTTCTGGGACCCAATCAAAAAACCAATCGTTCTAGTTCCGGCACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGAAAGAGCCACGTGTGCAAGATACTAAACAGAAATGCTGTTTATCAAAAATTTATGAAAGACCTACTTGAAAATAATTAAAACTATTTCGATTTTGAAAATCAATGAGATCATAGGCCATTGATCAGTATCCTGCTCGAAGTAGGTTCGATTGAAATAATGCATCAGAATCATATTGAATCGTAAGTTGTTGAATGAGCAACCAAAACATATATGAGCTGCCTTTTACAAATAATTACGTCTCTGATTCTCTATCATGTTCAGACAGCAGAATGTCTCTAGAGAACAACCAGTCTAGTTTATTCATAAAACAGGTTTTGAGCACATGACAAGAGTGTTCTAACTAGTTGATAGGGAAGCAAAATGAGTGTAAACAAATATACAATAGCAATTAATTAGTTAGCTCCTGCTTTTCGGGATCCACTTTGATTTCCACTTGGTTCGGCTCGTAGTCACTTGTC</canonical>
            <polymorphic>GGGACCTTTCAATTAGAAGGTTAGAGGAGCCTTCTTATTTCTTCGGCTAGTTTCACGAAAACTTCAATTTTGAAAAATTGGTGAATTCTCGTTCACTATTGATGAAAAACCACAACTTTCATTAAAACTGGGAAAGTTTTTTAAGCCAATAAGAGTGCTTTAACAAAATTTGGTAAAGTTGTGGAATTCCCGGAATATTTTTCACAGAAATTTTTAATTTCAAACAACACACTTTGAAAAGTGCCCCTCTATTTCTGGGACCCAATCAAAAAACCAATCGTTCTAGTTCCGGCACAAAATATTGTTTTCCTTGACCGAAAATTCAGTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCMCAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGAAAGAGCCACGTGTGCAAGATACTAAACAGAAATGCTGTTTATCAAAAATTTATGAAAGACCTACTTGAAAATAATTAAAACTATTTCGATTTTGAAAATCAATGAGATCATAGGCCATTGATCAGTATCCTGCTCGAAGTAGGTTCGATTGAAATAATGCATCAGAATCATATTGAATCGTAAGTTGTTGAATGAGCAACCAAAACATATATGAGCTGCCTTTTACAAATAATTACGTCTCTGATTCTCTATCATGTTCAGACAGCAGAATGTCTCTAGAGAACAACCAGTCTAGTTTATTCATAAAACAGGTTTTGAGCACATGACAAGAGTGTTCTAACTAGTTGATAGGGAAGCAAAATGAGTGTAAACAAATATACAATAGCAATTAATTAGTTAGCTCCTGCTTTTCGGGATCCACTTTGATTTCCACTTGGTTCGGCTCGTAGTCACTTGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>356 299 145 142 58</canonical_bands>
                <polymorphic_bands>356 299 200 145</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>307 55 55 53 51 48 46 45 42 41 33 28 26 25 21 20 17 15 13 12 12 12 9 6 4 2 2</canonical_bands>
                <polymorphic_bands>307 89 55 55 53 51 46 45 42 33 28 26 25 21 20 17 15 13 12 12 12 9 6 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTATGAGGAAAACAATAACAGTG</pcr_primer_p1>
		<pcr_primer_p2>ATTTCTGTTTAGTATCTTGCACAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCACAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGAAAGAGCCACGTGTGCAAGATACTAAACAGAAAT</canonical_amplicon>
		<polymorphic_amplicon>GTTATGAGGAAAACAATAACAGTGATTAATGCAAACCCACCAAAAAATAACTTTTAGATTTTCTTAATCAGCTGTCCTACCTGTGAAATTATCTTGTAATAGAAGAACTCTTTGACCAATCTAGGCACAATCTGCGACGATATGTTGAATGTAAAGGATGATCATAATGCTTGCMCAATTATTATGGAACTGTACGGATTTCAGATTGATCCAGTGAAAGAGCCACGTGTGCAAGATACTAAACAGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36119</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>268503</contig_pos>
        <strand></strand>
        <context>TAGATCATTA[C/T]YTTTAAAGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGAGAGTTGATAGCTAGAAAAAAGGCAATCATAGATTTTTAGATCATTA</left_flank>
        <right_flank>TTTTAAAGGACCCTTGAATTAGAGGGGACCCTTCTGTTTCTACGGAGAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCTAGCAGTTCGCTTTGGTCGGAAGCTCTTTCGAAACTGGCTGCGCACTTTCAAACAAAAAAAGATGTAAAGGAAGCACGTCAAGAAAACCAGCGAGAAGTTGTTTATGGTGTGTGGGATGTTGGTGTAGTCCTTGTAGTGGCCTTCCATTGTCCTTGGATCGAAGAACCAAGTTTGATGTTCAGCGGAGAAAATTACTGGTGAAGTGAAGAGGAAGAAGAAGCATCCGTAGAGAATTGGAGCCATCAGAACTGCACATGTTCGATAGCCACGGAAGTAAATTTTGACCATTAGGGGACAGACCATGTCAAGGATTCGGTTGAGGGCGAGAACAAGACATGTTAGGCATGCACTGCACCAACAACCAAGACCAATGGCTCCAGATATGTAGATGATGTTTGGATAGTCACAATAAGAGGCTCCTTGCATCAAAAGGAATCCAGTGACGAGAGAGTTGATAGCTAGAAAAAAGGCAATCATAGATTTTTAGATCATTACTTTTAAAGGACCCTTGAATTAGAGGGGACCCTTCTGTTTCTACGGAGAGAAGGAGTCCTTCCAATACAGGTTTTACGCTGTACTTTTGTATCTCAAACTCACTTATTGCACCTATATCAAATAGTCCAAGAAAAAACATGATTTTGAAACATGCCAGCCTTGATTGCCGGTGAAAAACCACCACAGTTGGAGCATACAGAAACTGAACTTTTTTATTTTTATTTGTATTAATTCTAACTTACTGCACTTACGATCACAATAACTCCATAAACAATATCTAGGGCTCCAGCAAAAACGTTTACATTTAAATTCGGGTTCGGAGGTTTGTAAGAGCTGCAATTGTAACCAGGAATTGATTCTGCATCTCCATAGTATAAAAATCGGTTCATTCCTTTCTTTCCTGAAAAAAATGTAATGAGATTAATTTTGAATCAAGGTGATGATATTGAAAAAAAGAAAGGGAGAATGAAATTTTTTGAACCTGGAAAAAAAGGAGGAGC</canonical>
            <polymorphic>TGTCTAGCAGTTCGCTTTGGTCGGAAGCTCTTTCGAAACTGGCTGCGCACTTTCAAACAAAAAAAGATGTAAAGGAAGCACGTCAAGAAAACCAGCGAGAAGTTGTTTATGGTGTGTGGGATGTTGGTGTAGTCCTTGTAGTGGCCTTCCATTGTCCTTGGATCGAAGAACCAAGTTTGATGTTCAGCGGAGAAAATTACTGGTGAAGTGAAGAGGAAGAAGAAGCATCCGTAGAGAATTGGAGCCATCAGAACTGCACATGTTCGATAGCCACGGAAGTAAATTTTGACCATTAGGGGACAGACCATGTCAAGGATTCGGTTGAGGGCGAGAACAAGACATGTTAGGCATGCACTGCACCAACAACCAAGACCAATGGCTCCAGATATGTAGATGATGTTTGGATAGTCACAATAAGAGGCTCCTTGCATCAAAAGGAATCCAGTGACGAGAGAGTTGATAGCTAGAAAAAAGGCAATCATAGATTTTTAGATCATTAYTTTTAAAGGACCCTTGAATTAGAGGGGACCCTTCTGTTTCTACGGAGAGAAGGAGTCCTTCCAATACAGGTTTTACGCTGTACTTTTGTATCTCAAACTCACTTATTGCACCTATATCAAATAGTCCAAGAAAAAACATGATTTTGAAACATGCCAGCCTTGATTGCCGGTGAAAAACCACCACAGTTGGAGCATACAGAAACTGAACTTTTTTATTTTTATTTGTATTAATTCTAACTTACTGCACTTACGATCACAATAACTCCATAAACAATATCTAGGGCTCCAGCAAAAACGTTTACATTTAAATTCGGGTTCGGAGGTTTGTAAGAGCTGCAATTGTAACCAGGAATTGATTCTGCATCTCCATAGTATAAAAATCGGTTCATTCCTTTCTTTCCTGAAAAAAATGTAATGAGATTAATTTTGAATCAAGGTGATGATATTGAAAAAAAGAAAGGGAGAATGAAATTTTTTGAACCTGGAAAAAAAGGAGGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCCAGATATGTAGATGATGTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGATATAGGTGCAATAAGTGA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GCTCCAGATATGTAGATGATGTTTGGATAGTCACAATAAGAGGCTCCTTGCATCAAAAGGAATCCAGTGACGAGAGAGTTGATAGCTAGAAAAAAGGCAATCATAGATTTTTAGATCATTACTTTTAAAGGACCCTTGAATTAGAGGGGACCCTTCTGTTTCTACGGAGAGAAGGAGTCCTTCCAATACAGGTTTTACGCTGTACTTTTGTATCTCAAACTCACTTATTGCACCTATATCAAA</canonical_amplicon>
		<polymorphic_amplicon>GCTCCAGATATGTAGATGATGTTTGGATAGTCACAATAAGAGGCTCCTTGCATCAAAAGGAATCCAGTGACGAGAGAGTTGATAGCTAGAAAAAAGGCAATCATAGATTTTTAGATCATTAYTTTTAAAGGACCCTTGAATTAGAGGGGACCCTTCTGTTTCTACGGAGAGAAGGAGTCCTTCCAATACAGGTTTTACGCTGTACTTTTGTATCTCAAACTCACTTATTGCACCTATATCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36120</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>268504</contig_pos>
        <strand>+</strand>
        <context>AGATCATTAY[C/T]TTTAAAGGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAGAGTTGATAGCTAGAAAAAAGGCAATCATAGATTTTTAGATCATTAC</left_flank>
        <right_flank>TTTAAAGGACCCTTGAATTAGAGGGGACCCTTCTGTTTCTACGGAGAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTAGCAGTTCGCTTTGGTCGGAAGCTCTTTCGAAACTGGCTGCGCACTTTCAAACAAAAAAAGATGTAAAGGAAGCACGTCAAGAAAACCAGCGAGAAGTTGTTTATGGTGTGTGGGATGTTGGTGTAGTCCTTGTAGTGGCCTTCCATTGTCCTTGGATCGAAGAACCAAGTTTGATGTTCAGCGGAGAAAATTACTGGTGAAGTGAAGAGGAAGAAGAAGCATCCGTAGAGAATTGGAGCCATCAGAACTGCACATGTTCGATAGCCACGGAAGTAAATTTTGACCATTAGGGGACAGACCATGTCAAGGATTCGGTTGAGGGCGAGAACAAGACATGTTAGGCATGCACTGCACCAACAACCAAGACCAATGGCTCCAGATATGTAGATGATGTTTGGATAGTCACAATAAGAGGCTCCTTGCATCAAAAGGAATCCAGTGACGAGAGAGTTGATAGCTAGAAAAAAGGCAATCATAGATTTTTAGATCATTACTTTTAAAGGACCCTTGAATTAGAGGGGACCCTTCTGTTTCTACGGAGAGAAGGAGTCCTTCCAATACAGGTTTTACGCTGTACTTTTGTATCTCAAACTCACTTATTGCACCTATATCAAATAGTCCAAGAAAAAACATGATTTTGAAACATGCCAGCCTTGATTGCCGGTGAAAAACCACCACAGTTGGAGCATACAGAAACTGAACTTTTTTATTTTTATTTGTATTAATTCTAACTTACTGCACTTACGATCACAATAACTCCATAAACAATATCTAGGGCTCCAGCAAAAACGTTTACATTTAAATTCGGGTTCGGAGGTTTGTAAGAGCTGCAATTGTAACCAGGAATTGATTCTGCATCTCCATAGTATAAAAATCGGTTCATTCCTTTCTTTCCTGAAAAAAATGTAATGAGATTAATTTTGAATCAAGGTGATGATATTGAAAAAAAGAAAGGGAGAATGAAATTTTTTGAACCTGGAAAAAAAGGAGGAGCT</canonical>
            <polymorphic>GTCTAGCAGTTCGCTTTGGTCGGAAGCTCTTTCGAAACTGGCTGCGCACTTTCAAACAAAAAAAGATGTAAAGGAAGCACGTCAAGAAAACCAGCGAGAAGTTGTTTATGGTGTGTGGGATGTTGGTGTAGTCCTTGTAGTGGCCTTCCATTGTCCTTGGATCGAAGAACCAAGTTTGATGTTCAGCGGAGAAAATTACTGGTGAAGTGAAGAGGAAGAAGAAGCATCCGTAGAGAATTGGAGCCATCAGAACTGCACATGTTCGATAGCCACGGAAGTAAATTTTGACCATTAGGGGACAGACCATGTCAAGGATTCGGTTGAGGGCGAGAACAAGACATGTTAGGCATGCACTGCACCAACAACCAAGACCAATGGCTCCAGATATGTAGATGATGTTTGGATAGTCACAATAAGAGGCTCCTTGCATCAAAAGGAATCCAGTGACGAGAGAGTTGATAGCTAGAAAAAAGGCAATCATAGATTTTTAGATCATTACYTTTAAAGGACCCTTGAATTAGAGGGGACCCTTCTGTTTCTACGGAGAGAAGGAGTCCTTCCAATACAGGTTTTACGCTGTACTTTTGTATCTCAAACTCACTTATTGCACCTATATCAAATAGTCCAAGAAAAAACATGATTTTGAAACATGCCAGCCTTGATTGCCGGTGAAAAACCACCACAGTTGGAGCATACAGAAACTGAACTTTTTTATTTTTATTTGTATTAATTCTAACTTACTGCACTTACGATCACAATAACTCCATAAACAATATCTAGGGCTCCAGCAAAAACGTTTACATTTAAATTCGGGTTCGGAGGTTTGTAAGAGCTGCAATTGTAACCAGGAATTGATTCTGCATCTCCATAGTATAAAAATCGGTTCATTCCTTTCTTTCCTGAAAAAAATGTAATGAGATTAATTTTGAATCAAGGTGATGATATTGAAAAAAAGAAAGGGAGAATGAAATTTTTTGAACCTGGAAAAAAAGGAGGAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCCAGATATGTAGATGATGTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGATATAGGTGCAATAAGTGA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GCTCCAGATATGTAGATGATGTTTGGATAGTCACAATAAGAGGCTCCTTGCATCAAAAGGAATCCAGTGACGAGAGAGTTGATAGCTAGAAAAAAGGCAATCATAGATTTTTAGATCATTACTTTTAAAGGACCCTTGAATTAGAGGGGACCCTTCTGTTTCTACGGAGAGAAGGAGTCCTTCCAATACAGGTTTTACGCTGTACTTTTGTATCTCAAACTCACTTATTGCACCTATATCAAA</canonical_amplicon>
		<polymorphic_amplicon>GCTCCAGATATGTAGATGATGTTTGGATAGTCACAATAAGAGGCTCCTTGCATCAAAAGGAATCCAGTGACGAGAGAGTTGATAGCTAGAAAAAAGGCAATCATAGATTTTTAGATCATTACYTTTAAAGGACCCTTGAATTAGAGGGGACCCTTCTGTTTCTACGGAGAGAAGGAGTCCTTCCAATACAGGTTTTACGCTGTACTTTTGTATCTCAAACTCACTTATTGCACCTATATCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36121</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>268539</contig_pos>
        <strand>+</strand>
        <context>GGACCCTTCT[A/G]TTTCTACGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTAGATCATTACTTTTAAAGGACCCTTGAATTAGAGGGGACCCTTCT</left_flank>
        <right_flank>TTTCTACGGAGAGAAGGAGTCCTTCCAATACAGGTTTTACGCTGTACTTT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTGGCTGCGCACTTTCAAACAAAAAAAGATGTAAAGGAAGCACGTCAAGAAAACCAGCGAGAAGTTGTTTATGGTGTGTGGGATGTTGGTGTAGTCCTTGTAGTGGCCTTCCATTGTCCTTGGATCGAAGAACCAAGTTTGATGTTCAGCGGAGAAAATTACTGGTGAAGTGAAGAGGAAGAAGAAGCATCCGTAGAGAATTGGAGCCATCAGAACTGCACATGTTCGATAGCCACGGAAGTAAATTTTGACCATTAGGGGACAGACCATGTCAAGGATTCGGTTGAGGGCGAGAACAAGACATGTTAGGCATGCACTGCACCAACAACCAAGACCAATGGCTCCAGATATGTAGATGATGTTTGGATAGTCACAATAAGAGGCTCCTTGCATCAAAAGGAATCCAGTGACGAGAGAGTTGATAGCTAGAAAAAAGGCAATCATAGATTTTTAGATCATTACTTTTAAAGGACCCTTGAATTAGAGGGGACCCTTCTGTTTCTACGGAGAGAAGGAGTCCTTCCAATACAGGTTTTACGCTGTACTTTTGTATCTCAAACTCACTTATTGCACCTATATCAAATAGTCCAAGAAAAAACATGATTTTGAAACATGCCAGCCTTGATTGCCGGTGAAAAACCACCACAGTTGGAGCATACAGAAACTGAACTTTTTTATTTTTATTTGTATTAATTCTAACTTACTGCACTTACGATCACAATAACTCCATAAACAATATCTAGGGCTCCAGCAAAAACGTTTACATTTAAATTCGGGTTCGGAGGTTTGTAAGAGCTGCAATTGTAACCAGGAATTGATTCTGCATCTCCATAGTATAAAAATCGGTTCATTCCTTTCTTTCCTGAAAAAAATGTAATGAGATTAATTTTGAATCAAGGTGATGATATTGAAAAAAAGAAAGGGAGAATGAAATTTTTTGAACCTGGAAAAAAAGGAGGAGCTGTGGCCGAATATAAAGAAAAAGTAGGCGTGCGAAT</canonical>
            <polymorphic>AACTGGCTGCGCACTTTCAAACAAAAAAAGATGTAAAGGAAGCACGTCAAGAAAACCAGCGAGAAGTTGTTTATGGTGTGTGGGATGTTGGTGTAGTCCTTGTAGTGGCCTTCCATTGTCCTTGGATCGAAGAACCAAGTTTGATGTTCAGCGGAGAAAATTACTGGTGAAGTGAAGAGGAAGAAGAAGCATCCGTAGAGAATTGGAGCCATCAGAACTGCACATGTTCGATAGCCACGGAAGTAAATTTTGACCATTAGGGGACAGACCATGTCAAGGATTCGGTTGAGGGCGAGAACAAGACATGTTAGGCATGCACTGCACCAACAACCAAGACCAATGGCTCCAGATATGTAGATGATGTTTGGATAGTCACAATAAGAGGCTCCTTGCATCAAAAGGAATCCAGTGACGAGAGAGTTGATAGCTAGAAAAAAGGCAATCATAGATTTTTAGATCATTACTTTTAAAGGACCCTTGAATTAGAGGGGACCCTTCTRTTTCTACGGAGAGAAGGAGTCCTTCCAATACAGGTTTTACGCTGTACTTTTGTATCTCAAACTCACTTATTGCACCTATATCAAATAGTCCAAGAAAAAACATGATTTTGAAACATGCCAGCCTTGATTGCCGGTGAAAAACCACCACAGTTGGAGCATACAGAAACTGAACTTTTTTATTTTTATTTGTATTAATTCTAACTTACTGCACTTACGATCACAATAACTCCATAAACAATATCTAGGGCTCCAGCAAAAACGTTTACATTTAAATTCGGGTTCGGAGGTTTGTAAGAGCTGCAATTGTAACCAGGAATTGATTCTGCATCTCCATAGTATAAAAATCGGTTCATTCCTTTCTTTCCTGAAAAAAATGTAATGAGATTAATTTTGAATCAAGGTGATGATATTGAAAAAAAGAAAGGGAGAATGAAATTTTTTGAACCTGGAAAAAAAGGAGGAGCTGTGGCCGAATATAAAGAAAAAGTAGGCGTGCGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCCAGATATGTAGATGATGTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGATATAGGTGCAATAAGTGA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GCTCCAGATATGTAGATGATGTTTGGATAGTCACAATAAGAGGCTCCTTGCATCAAAAGGAATCCAGTGACGAGAGAGTTGATAGCTAGAAAAAAGGCAATCATAGATTTTTAGATCATTACTTTTAAAGGACCCTTGAATTAGAGGGGACCCTTCTGTTTCTACGGAGAGAAGGAGTCCTTCCAATACAGGTTTTACGCTGTACTTTTGTATCTCAAACTCACTTATTGCACCTATATCAAA</canonical_amplicon>
		<polymorphic_amplicon>GCTCCAGATATGTAGATGATGTTTGGATAGTCACAATAAGAGGCTCCTTGCATCAAAAGGAATCCAGTGACGAGAGAGTTGATAGCTAGAAAAAAGGCAATCATAGATTTTTAGATCATTACTTTTAAAGGACCCTTGAATTAGAGGGGACCCTTCTRTTTCTACGGAGAGAAGGAGTCCTTCCAATACAGGTTTTACGCTGTACTTTTGTATCTCAAACTCACTTATTGCACCTATATCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36122</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>268551</contig_pos>
        <strand>+</strand>
        <context>TTCTACGGAG[A/G]GAAGGAGTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACTTTTAAAGGACCCTTGAATTAGAGGGGACCCTTCTGTTTCTACGGAG</left_flank>
        <right_flank>GAAGGAGTCCTTCCAATACAGGTTTTACGCTGTACTTTTGTATCTCAAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTCAAACAAAAAAAGATGTAAAGGAAGCACGTCAAGAAAACCAGCGAGAAGTTGTTTATGGTGTGTGGGATGTTGGTGTAGTCCTTGTAGTGGCCTTCCATTGTCCTTGGATCGAAGAACCAAGTTTGATGTTCAGCGGAGAAAATTACTGGTGAAGTGAAGAGGAAGAAGAAGCATCCGTAGAGAATTGGAGCCATCAGAACTGCACATGTTCGATAGCCACGGAAGTAAATTTTGACCATTAGGGGACAGACCATGTCAAGGATTCGGTTGAGGGCGAGAACAAGACATGTTAGGCATGCACTGCACCAACAACCAAGACCAATGGCTCCAGATATGTAGATGATGTTTGGATAGTCACAATAAGAGGCTCCTTGCATCAAAAGGAATCCAGTGACGAGAGAGTTGATAGCTAGAAAAAAGGCAATCATAGATTTTTAGATCATTACTTTTAAAGGACCCTTGAATTAGAGGGGACCCTTCTGTTTCTACGGAGAGAAGGAGTCCTTCCAATACAGGTTTTACGCTGTACTTTTGTATCTCAAACTCACTTATTGCACCTATATCAAATAGTCCAAGAAAAAACATGATTTTGAAACATGCCAGCCTTGATTGCCGGTGAAAAACCACCACAGTTGGAGCATACAGAAACTGAACTTTTTTATTTTTATTTGTATTAATTCTAACTTACTGCACTTACGATCACAATAACTCCATAAACAATATCTAGGGCTCCAGCAAAAACGTTTACATTTAAATTCGGGTTCGGAGGTTTGTAAGAGCTGCAATTGTAACCAGGAATTGATTCTGCATCTCCATAGTATAAAAATCGGTTCATTCCTTTCTTTCCTGAAAAAAATGTAATGAGATTAATTTTGAATCAAGGTGATGATATTGAAAAAAAGAAAGGGAGAATGAAATTTTTTGAACCTGGAAAAAAAGGAGGAGCTGTGGCCGAATATAAAGAAAAAGTAGGCGTGCGAATTGGCAATGAACG</canonical>
            <polymorphic>ACTTTCAAACAAAAAAAGATGTAAAGGAAGCACGTCAAGAAAACCAGCGAGAAGTTGTTTATGGTGTGTGGGATGTTGGTGTAGTCCTTGTAGTGGCCTTCCATTGTCCTTGGATCGAAGAACCAAGTTTGATGTTCAGCGGAGAAAATTACTGGTGAAGTGAAGAGGAAGAAGAAGCATCCGTAGAGAATTGGAGCCATCAGAACTGCACATGTTCGATAGCCACGGAAGTAAATTTTGACCATTAGGGGACAGACCATGTCAAGGATTCGGTTGAGGGCGAGAACAAGACATGTTAGGCATGCACTGCACCAACAACCAAGACCAATGGCTCCAGATATGTAGATGATGTTTGGATAGTCACAATAAGAGGCTCCTTGCATCAAAAGGAATCCAGTGACGAGAGAGTTGATAGCTAGAAAAAAGGCAATCATAGATTTTTAGATCATTACTTTTAAAGGACCCTTGAATTAGAGGGGACCCTTCTGTTTCTACGGAGRGAAGGAGTCCTTCCAATACAGGTTTTACGCTGTACTTTTGTATCTCAAACTCACTTATTGCACCTATATCAAATAGTCCAAGAAAAAACATGATTTTGAAACATGCCAGCCTTGATTGCCGGTGAAAAACCACCACAGTTGGAGCATACAGAAACTGAACTTTTTTATTTTTATTTGTATTAATTCTAACTTACTGCACTTACGATCACAATAACTCCATAAACAATATCTAGGGCTCCAGCAAAAACGTTTACATTTAAATTCGGGTTCGGAGGTTTGTAAGAGCTGCAATTGTAACCAGGAATTGATTCTGCATCTCCATAGTATAAAAATCGGTTCATTCCTTTCTTTCCTGAAAAAAATGTAATGAGATTAATTTTGAATCAAGGTGATGATATTGAAAAAAAGAAAGGGAGAATGAAATTTTTTGAACCTGGAAAAAAAGGAGGAGCTGTGGCCGAATATAAAGAAAAAGTAGGCGTGCGAATTGGCAATGAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCCAGATATGTAGATGATGTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGATATAGGTGCAATAAGTGA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GCTCCAGATATGTAGATGATGTTTGGATAGTCACAATAAGAGGCTCCTTGCATCAAAAGGAATCCAGTGACGAGAGAGTTGATAGCTAGAAAAAAGGCAATCATAGATTTTTAGATCATTACTTTTAAAGGACCCTTGAATTAGAGGGGACCCTTCTGTTTCTACGGAGAGAAGGAGTCCTTCCAATACAGGTTTTACGCTGTACTTTTGTATCTCAAACTCACTTATTGCACCTATATCAAA</canonical_amplicon>
		<polymorphic_amplicon>GCTCCAGATATGTAGATGATGTTTGGATAGTCACAATAAGAGGCTCCTTGCATCAAAAGGAATCCAGTGACGAGAGAGTTGATAGCTAGAAAAAAGGCAATCATAGATTTTTAGATCATTACTTTTAAAGGACCCTTGAATTAGAGGGGACCCTTCTGTTTCTACGGAGRGAAGGAGTCCTTCCAATACAGGTTTTACGCTGTACTTTTGTATCTCAAACTCACTTATTGCACCTATATCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36123</snp_id>
        <super_contig>c010500735.Contig2</super_contig>
        <contig_pos>329007</contig_pos>
        <strand>+</strand>
        <context>ACTTTAGATT[C/G]TTGGCCATGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATGGTAAAGCAATCACAATAGTTTTAATCAAATGCAATGAACTTTAGATT</left_flank>
        <right_flank>TTGGCCATGAAACATCAGGAGTTGTATCCGAGATCGGAAGTGAGGTACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCTTAAATTTTCATATACTTCTCGCTTTTTGAAACATTTCGAACCCGCATTAACAAAGTCCAGAAGTCAATAATGTCCGAACCTATTTCTAATTCTCTGGACCTCTGAATATCTTCCGATCACTCAATCTTCCCAACACGCGCTGTGTTATCTTATCATTTGCTTCCTAATAAAAAATAAATAGAACATTATCTCCTCTTATTCTTTTCCGGTCTTTTTTTTTGTATTTTTCTATTGCTACTTCACAAACATTCAGCAAAGACATGTCTGAAGACAACCTATCAGCTGTTCTTCATGGAGTTGATGACCTCCGTTTGGAACAGGTTCCAATTCCGAAACCCGGACCCAAACAAGTCTTGGTCCGTGTTCATACCGTTGGAATATGTGGAAGTGATGTACATTTTTGGACTCGTGGAGCAATTGGGCCGTTTATCGTTAAAGAGCCAATGGTAAAGCAATCACAATAGTTTTAATCAAATGCAATGAACTTTAGATTGTTGGCCATGAAACATCAGGAGTTGTATCCGAGATCGGAAGTGAGGTACAACACTTGAAAGTTGGTGATCGAATCGCCATGGAACCAGGATTGTCATGCAAACTTTGTGAGCATTGTAAAACTGGAAGATACAATTTGTGTCCTGAATCGAGATTTTTCGCCACTCCACCAATCAATGGTGCCCTATCAAGATACGTCGTTCATGATGATGACTTTTGCTTCAAGTGGGTTTTATAACGGGGAAAAATATACCGAAAGGAAAAATTCAGGCTACCTGATAATCTCTCTTTCGAAGATGGAGCTCTCATAGAACCACTGTCAGTGGCTATTCATGCATGTCGCCGTGGAAATGTTCGAATGGGACATAGAGTTTTAGTCCTTGGAGCTGGCCCGATCGGTGTTCTCAATCTGCTAACTGCCAAATCAGTGGGAGCTGGAAAAGTTGTTATCACCGACCTAGACGACGGTCGTCTTTCCCTCGCCAAGAAGCTGGGAGCAGAT</canonical>
            <polymorphic>AATTCTTAAATTTTCATATACTTCTCGCTTTTTGAAACATTTCGAACCCGCATTAACAAAGTCCAGAAGTCAATAATGTCCGAACCTATTTCTAATTCTCTGGACCTCTGAATATCTTCCGATCACTCAATCTTCCCAACACGCGCTGTGTTATCTTATCATTTGCTTCCTAATAAAAAATAAATAGAACATTATCTCCTCTTATTCTTTTCCGGTCTTTTTTTTTGTATTTTTCTATTGCTACTTCACAAACATTCAGCAAAGACATGTCTGAAGACAACCTATCAGCTGTTCTTCATGGAGTTGATGACCTCCGTTTGGAACAGGTTCCAATTCCGAAACCCGGACCCAAACAAGTCTTGGTCCGTGTTCATACCGTTGGAATATGTGGAAGTGATGTACATTTTTGGACTCGTGGAGCAATTGGGCCGTTTATCGTTAAAGAGCCAATGGTAAAGCAATCACAATAGTTTTAATCAAATGCAATGAACTTTAGATTSTTGGCCATGAAACATCAGGAGTTGTATCCGAGATCGGAAGTGAGGTACAACACTTGAAAGTTGGTGATCGAATCGCCATGGAACCAGGATTGTCATGCAAACTTTGTGAGCATTGTAAAACTGGAAGATACAATTTGTGTCCTGAATCGAGATTTTTCGCCACTCCACCAATCAATGGTGCCCTATCAAGATACGTCGTTCATGATGATGACTTTTGCTTCAAGTGGGTTTTATAACGGGGAAAAATATACCGAAAGGAAAAATTCAGGCTACCTGATAATCTCTCTTTCGAAGATGGAGCTCTCATAGAACCACTGTCAGTGGCTATTCATGCATGTCGCCGTGGAAATGTTCGAATGGGACATAGAGTTTTAGTCCTTGGAGCTGGCCCGATCGGTGTTCTCAATCTGCTAACTGCCAAATCAGTGGGAGCTGGAAAAGTTGTTATCACCGACCTAGACGACGGTCGTCTTTCCCTCGCCAAGAAGCTGGGAGCAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGTGATGTACATTTTTGGACT</pcr_primer_p1>
		<pcr_primer_p2>CACAAATTGTATCTTCCAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAGTGATGTACATTTTTGGACTCGTGGAGCAATTGGGCCGTTTATCGTTAAAGAGCCAATGGTAAAGCAATCACAATAGTTTTAATCAAATGCAATGAACTTTAGATTGTTGGCCATGAAACATCAGGAGTTGTATCCGAGATCGGAAGTGAGGTACAACACTTGAAAGTTGGTGATCGAATCGCCATGGAACCAGGATTGTCATGCAAACTTTGTGAGCATTGTAAAACTGGAAGATACAATTTGTG</canonical_amplicon>
		<polymorphic_amplicon>GAAGTGATGTACATTTTTGGACTCGTGGAGCAATTGGGCCGTTTATCGTTAAAGAGCCAATGGTAAAGCAATCACAATAGTTTTAATCAAATGCAATGAACTTTAGATTSTTGGCCATGAAACATCAGGAGTTGTATCCGAGATCGGAAGTGAGGTACAACACTTGAAAGTTGGTGATCGAATCGCCATGGAACCAGGATTGTCATGCAAACTTTGTGAGCATTGTAAAACTGGAAGATACAATTTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36124</snp_id>
        <super_contig>c010500932.Contig1</super_contig>
        <contig_pos>32371</contig_pos>
        <strand>+</strand>
        <context>CATCAAAAAA[A/T]MTGAAAAMTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTACACTTTGTGAATCGGGTGTTTTTATTTAATTTAACATCAAAAAA</left_flank>
        <right_flank>GTGAAAAATTTTAATTATAATGTAGTTCTGTTTGTCCAGAATTAAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATAATATAATTGGTGGAGGGAGACACCTTTTGGTTTCAAAGGAATTAGTAATAATGTTGTCATTTAGGCATGAAGACATAGAAGAGATTTAGAGAAAGAGAGGATTCTGAATTGATGAGGAACGGAGATCGTTATCAGGTTATTTAGTGCAAGTAGTTAACCTATAAATCGAAAGATTTGTGGGAAAATTTGAGAAAAAGTTGAAAAGGTGTACTGGGAAAAACGGAAGAAGATAACGAAAGGTAAAATCTGCGATAGAAGGGTCCTTTTTAGCTTATTTATCTCGATTCTTGTAAAAGATACCAAAATTTTGTCATCTGACAAAACATTTCTGATAATATGATAAACAATTCATCAGTTGGTTATTTTTTGATATATTGCACAGGAATCGGGATAATTGAGGTTAAACTTGAAAGTGTGGGACCCTTGGATTGCAGGTTTTAAGGTATTTTACACTTTGTGAATCGGGTGTTTTTATTTAATTTAACATCAAAAAAAGTGAAAAATTTTAATTATAATGTAGTTCTGTTTGTCCAGAATTAAAAAAAAAGCAGGAAACATCGAAATTCGAAAGTATTTCAATTCTGAAAATTTTCGAGCTATTTATTGGTAAAAATGCAAATTCCGCATTTTTCAAGATTCCTGAACATGGAATCCGGCATGGTCAAAAATTTGGAATTTCAGTCAGAAAGAATGGTTGAAAATCACAAATTCCGAATTTTAGGCTCAAAATCAATTGATAAGTTTGTAACATTTTTCAGGCAAAAATCGGAAAAATCAAGATACTCTTTTTAATAAAAAATCGCAAAATTAAACTGTCCAGCCAGAAAAACCCGGGTAAAGTAGTTTCATAATGTTAGCGGAAAAGCGGGTCGCGGTGTGGAACAGATGATGATGATACGGAGAAAAAGAGAGAGAAAAAGAAGAATAAGAAGAGCCATCCCTCCGTTGCCTCTCCCTCTATTGTGGCCAAACAGACAGTACGGACAGAGAAATAG</canonical>
            <polymorphic>TAATAATATAATTGGTGGAGGGAGACACCTTTTGGTTTCAAAGGAATTAGTAATAATGTTGTCATTTAGGCATGAAGACATAGAAGAGATTTAGAGAAAGAGAGGATTCTGAATTGATGAGGAACGGAGATCGTTATCAGGTTATTTAGTGCAAGTAGTTAACCTATAAATCGAAAGATTTGTGGGAAAATTTGAGAAAAAGTTGAAAAGGTGTACTGGGAAAAACGGAAGAAGATAACGAAAGGTAAAATCTGCGATAGAAGGGTCCTTTTTAGCTTATTTATCTCGATTCTTGTAAAAGATACCAAAATTTTGTCATCTGACAAAACATTTCTGATAATATGATAAACAATTCATCAGTTGGTTATTTTTTGATATATTGCACAGGAATCGGGATAATTGAGGTTAAACTTGAAAGTGTGGGACCCTTGGATTGCAGGTTTTAAGGTATTTTACACTTTGTGAATCGGGTGTTTTTATTTAATTTAACATCAAAAAAWGTGAAAAATTTTAATTATAATGTAGTTCTGTTTGTCCAGAATTAAAAAAAAAGCAGGAAACATCGAAATTCGAAAGTATTTCAATTCTGAAAATTTTCGAGCTATTTATTGGTAAAAATGCAAATTCCGCATTTTTCAAGATTCCTGAACATGGAATCCGGCATGGTCAAAAATTTGGAATTTCAGTCAGAAAGAATGGTTGAAAATCACAAATTCCGAATTTTAGGCTCAAAATCAATTGATAAGTTTGTAACATTTTTCAGGCAAAAATCGGAAAAATCAAGATACTCTTTTTAATAAAAAATCGCAAAATTAAACTGTCCAGCCAGAAAAACCCGGGTAAAGTAGTTTCATAATGTTAGCGGAAAAGCGGGTCGCGGTGTGGAACAGATGATGATGATACGGAGAAAAAGAGAGAGAAAAAGAAGAATAAGAAGAGCCATCCCTCCGTTGCCTCTCCCTCTATTGTGGCCAAACAGACAGTACGGACAGAGAAATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACGGAAGAAGATAACGAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTACCAATAAATAGCTCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>393</pcr_amplicon_size>
		<canonical_amplicon>AACGGAAGAAGATAACGAAAGGTAAAATCTGCGATAGAAGGGTCCTTTTTAGCTTATTTATCTCGATTCTTGTAAAAGATACCAAAATTTTGTCATCTGACAAAACATTTCTGATAATATGATAAACAATTCATCAGTTGGTTATTTTTTGATATATTGCACAGGAATCGGGATAATTGAGGTTAAACTTGAAAGTGTGGGACCCTTGGATTGCAGGTTTTAAGGTATTTTACACTTTGTGAATCGGGTGTTTTTATTTAATTTAACATCAAAAAAAGTGAAAAATTTTAATTATAATGTAGTTCTGTTTGTCCAGAATTAAAAAAAAAGCAGGAAACATCGAAATTCGAAAGTATTTCAATTCTGAAAATTTTCGAGCTATTTATTGGTAAA</canonical_amplicon>
		<polymorphic_amplicon>AACGGAAGAAGATAACGAAAGGTAAAATCTGCGATAGAAGGGTCCTTTTTAGCTTATTTATCTCGATTCTTGTAAAAGATACCAAAATTTTGTCATCTGACAAAACATTTCTGATAATATGATAAACAATTCATCAGTTGGTTATTTTTTGATATATTGCACAGGAATCGGGATAATTGAGGTTAAACTTGAAAGTGTGGGACCCTTGGATTGCAGGTTTTAAGGTATTTTACACTTTGTGAATCGGGTGTTTTTATTTAATTTAACATCAAAAAAWGTGAAAAATTTTAATTATAATGTAGTTCTGTTTGTCCAGAATTAAAAAAAAAGCAGGAAACATCGAAATTCGAAAGTATTTCAATTCTGAAAATTTTCGAGCTATTTATTGGTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36125</snp_id>
        <super_contig>c010500932.Contig1</super_contig>
        <contig_pos>32372</contig_pos>
        <strand>+</strand>
        <context>ATCAAAAAAW[A/C]TGAAAAMTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTACACTTTGTGAATCGGGTGTTTTTATTTAATTTAACATCAAAAAAA</left_flank>
        <right_flank>TGAAAAATTTTAATTATAATGTAGTTCTGTTTGTCCAGAATTAAAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAATATAATTGGTGGAGGGAGACACCTTTTGGTTTCAAAGGAATTAGTAATAATGTTGTCATTTAGGCATGAAGACATAGAAGAGATTTAGAGAAAGAGAGGATTCTGAATTGATGAGGAACGGAGATCGTTATCAGGTTATTTAGTGCAAGTAGTTAACCTATAAATCGAAAGATTTGTGGGAAAATTTGAGAAAAAGTTGAAAAGGTGTACTGGGAAAAACGGAAGAAGATAACGAAAGGTAAAATCTGCGATAGAAGGGTCCTTTTTAGCTTATTTATCTCGATTCTTGTAAAAGATACCAAAATTTTGTCATCTGACAAAACATTTCTGATAATATGATAAACAATTCATCAGTTGGTTATTTTTTGATATATTGCACAGGAATCGGGATAATTGAGGTTAAACTTGAAAGTGTGGGACCCTTGGATTGCAGGTTTTAAGGTATTTTACACTTTGTGAATCGGGTGTTTTTATTTAATTTAACATCAAAAAAAGTGAAAAATTTTAATTATAATGTAGTTCTGTTTGTCCAGAATTAAAAAAAAAGCAGGAAACATCGAAATTCGAAAGTATTTCAATTCTGAAAATTTTCGAGCTATTTATTGGTAAAAATGCAAATTCCGCATTTTTCAAGATTCCTGAACATGGAATCCGGCATGGTCAAAAATTTGGAATTTCAGTCAGAAAGAATGGTTGAAAATCACAAATTCCGAATTTTAGGCTCAAAATCAATTGATAAGTTTGTAACATTTTTCAGGCAAAAATCGGAAAAATCAAGATACTCTTTTTAATAAAAAATCGCAAAATTAAACTGTCCAGCCAGAAAAACCCGGGTAAAGTAGTTTCATAATGTTAGCGGAAAAGCGGGTCGCGGTGTGGAACAGATGATGATGATACGGAGAAAAAGAGAGAGAAAAAGAAGAATAAGAAGAGCCATCCCTCCGTTGCCTCTCCCTCTATTGTGGCCAAACAGACAGTACGGACAGAGAAATAGT</canonical>
            <polymorphic>AATAATATAATTGGTGGAGGGAGACACCTTTTGGTTTCAAAGGAATTAGTAATAATGTTGTCATTTAGGCATGAAGACATAGAAGAGATTTAGAGAAAGAGAGGATTCTGAATTGATGAGGAACGGAGATCGTTATCAGGTTATTTAGTGCAAGTAGTTAACCTATAAATCGAAAGATTTGTGGGAAAATTTGAGAAAAAGTTGAAAAGGTGTACTGGGAAAAACGGAAGAAGATAACGAAAGGTAAAATCTGCGATAGAAGGGTCCTTTTTAGCTTATTTATCTCGATTCTTGTAAAAGATACCAAAATTTTGTCATCTGACAAAACATTTCTGATAATATGATAAACAATTCATCAGTTGGTTATTTTTTGATATATTGCACAGGAATCGGGATAATTGAGGTTAAACTTGAAAGTGTGGGACCCTTGGATTGCAGGTTTTAAGGTATTTTACACTTTGTGAATCGGGTGTTTTTATTTAATTTAACATCAAAAAAAMTGAAAAATTTTAATTATAATGTAGTTCTGTTTGTCCAGAATTAAAAAAAAAGCAGGAAACATCGAAATTCGAAAGTATTTCAATTCTGAAAATTTTCGAGCTATTTATTGGTAAAAATGCAAATTCCGCATTTTTCAAGATTCCTGAACATGGAATCCGGCATGGTCAAAAATTTGGAATTTCAGTCAGAAAGAATGGTTGAAAATCACAAATTCCGAATTTTAGGCTCAAAATCAATTGATAAGTTTGTAACATTTTTCAGGCAAAAATCGGAAAAATCAAGATACTCTTTTTAATAAAAAATCGCAAAATTAAACTGTCCAGCCAGAAAAACCCGGGTAAAGTAGTTTCATAATGTTAGCGGAAAAGCGGGTCGCGGTGTGGAACAGATGATGATGATACGGAGAAAAAGAGAGAGAAAAAGAAGAATAAGAAGAGCCATCCCTCCGTTGCCTCTCCCTCTATTGTGGCCAAACAGACAGTACGGACAGAGAAATAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>206 173 171 124 86 36 35 33 31 30 29 16 10 9 7 2 2</canonical_bands>
                <polymorphic_bands>236 173 171 124 86 36 35 33 31 29 16 10 9 7 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACGGAAGAAGATAACGAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTACCAATAAATAGCTCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>393</pcr_amplicon_size>
		<canonical_amplicon>AACGGAAGAAGATAACGAAAGGTAAAATCTGCGATAGAAGGGTCCTTTTTAGCTTATTTATCTCGATTCTTGTAAAAGATACCAAAATTTTGTCATCTGACAAAACATTTCTGATAATATGATAAACAATTCATCAGTTGGTTATTTTTTGATATATTGCACAGGAATCGGGATAATTGAGGTTAAACTTGAAAGTGTGGGACCCTTGGATTGCAGGTTTTAAGGTATTTTACACTTTGTGAATCGGGTGTTTTTATTTAATTTAACATCAAAAAAAGTGAAAAATTTTAATTATAATGTAGTTCTGTTTGTCCAGAATTAAAAAAAAAGCAGGAAACATCGAAATTCGAAAGTATTTCAATTCTGAAAATTTTCGAGCTATTTATTGGTAAA</canonical_amplicon>
		<polymorphic_amplicon>AACGGAAGAAGATAACGAAAGGTAAAATCTGCGATAGAAGGGTCCTTTTTAGCTTATTTATCTCGATTCTTGTAAAAGATACCAAAATTTTGTCATCTGACAAAACATTTCTGATAATATGATAAACAATTCATCAGTTGGTTATTTTTTGATATATTGCACAGGAATCGGGATAATTGAGGTTAAACTTGAAAGTGTGGGACCCTTGGATTGCAGGTTTTAAGGTATTTTACACTTTGTGAATCGGGTGTTTTTATTTAATTTAACATCAAAAAAAMTGAAAAATTTTAATTATAATGTAGTTCTGTTTGTCCAGAATTAAAAAAAAAGCAGGAAACATCGAAATTCGAAAGTATTTCAATTCTGAAAATTTTCGAGCTATTTATTGGTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36126</snp_id>
        <super_contig>c010500932.Contig1</super_contig>
        <contig_pos>32379</contig_pos>
        <strand></strand>
        <context>AAWMTGAAAA[A/C]TTTTAATTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTTGTGAATCGGGTGTTTTTATTTAATTTAACATCAAAAAAAGTGAAAA</left_flank>
        <right_flank>TTTTAATTATAATGTAGTTCTGTTTGTCCAGAATTAAAAAAAAAGCAGGA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATTGGTGGAGGGAGACACCTTTTGGTTTCAAAGGAATTAGTAATAATGTTGTCATTTAGGCATGAAGACATAGAAGAGATTTAGAGAAAGAGAGGATTCTGAATTGATGAGGAACGGAGATCGTTATCAGGTTATTTAGTGCAAGTAGTTAACCTATAAATCGAAAGATTTGTGGGAAAATTTGAGAAAAAGTTGAAAAGGTGTACTGGGAAAAACGGAAGAAGATAACGAAAGGTAAAATCTGCGATAGAAGGGTCCTTTTTAGCTTATTTATCTCGATTCTTGTAAAAGATACCAAAATTTTGTCATCTGACAAAACATTTCTGATAATATGATAAACAATTCATCAGTTGGTTATTTTTTGATATATTGCACAGGAATCGGGATAATTGAGGTTAAACTTGAAAGTGTGGGACCCTTGGATTGCAGGTTTTAAGGTATTTTACACTTTGTGAATCGGGTGTTTTTATTTAATTTAACATCAAAAAAAGTGAAAAATTTTAATTATAATGTAGTTCTGTTTGTCCAGAATTAAAAAAAAAGCAGGAAACATCGAAATTCGAAAGTATTTCAATTCTGAAAATTTTCGAGCTATTTATTGGTAAAAATGCAAATTCCGCATTTTTCAAGATTCCTGAACATGGAATCCGGCATGGTCAAAAATTTGGAATTTCAGTCAGAAAGAATGGTTGAAAATCACAAATTCCGAATTTTAGGCTCAAAATCAATTGATAAGTTTGTAACATTTTTCAGGCAAAAATCGGAAAAATCAAGATACTCTTTTTAATAAAAAATCGCAAAATTAAACTGTCCAGCCAGAAAAACCCGGGTAAAGTAGTTTCATAATGTTAGCGGAAAAGCGGGTCGCGGTGTGGAACAGATGATGATGATACGGAGAAAAAGAGAGAGAAAAAGAAGAATAAGAAGAGCCATCCCTCCGTTGCCTCTCCCTCTATTGTGGCCAAACAGACAGTACGGACAGAGAAATAGTACGGAAA</canonical>
            <polymorphic>TAATTGGTGGAGGGAGACACCTTTTGGTTTCAAAGGAATTAGTAATAATGTTGTCATTTAGGCATGAAGACATAGAAGAGATTTAGAGAAAGAGAGGATTCTGAATTGATGAGGAACGGAGATCGTTATCAGGTTATTTAGTGCAAGTAGTTAACCTATAAATCGAAAGATTTGTGGGAAAATTTGAGAAAAAGTTGAAAAGGTGTACTGGGAAAAACGGAAGAAGATAACGAAAGGTAAAATCTGCGATAGAAGGGTCCTTTTTAGCTTATTTATCTCGATTCTTGTAAAAGATACCAAAATTTTGTCATCTGACAAAACATTTCTGATAATATGATAAACAATTCATCAGTTGGTTATTTTTTGATATATTGCACAGGAATCGGGATAATTGAGGTTAAACTTGAAAGTGTGGGACCCTTGGATTGCAGGTTTTAAGGTATTTTACACTTTGTGAATCGGGTGTTTTTATTTAATTTAACATCAAAAAAAGTGAAAAMTTTTAATTATAATGTAGTTCTGTTTGTCCAGAATTAAAAAAAAAGCAGGAAACATCGAAATTCGAAAGTATTTCAATTCTGAAAATTTTCGAGCTATTTATTGGTAAAAATGCAAATTCCGCATTTTTCAAGATTCCTGAACATGGAATCCGGCATGGTCAAAAATTTGGAATTTCAGTCAGAAAGAATGGTTGAAAATCACAAATTCCGAATTTTAGGCTCAAAATCAATTGATAAGTTTGTAACATTTTTCAGGCAAAAATCGGAAAAATCAAGATACTCTTTTTAATAAAAAATCGCAAAATTAAACTGTCCAGCCAGAAAAACCCGGGTAAAGTAGTTTCATAATGTTAGCGGAAAAGCGGGTCGCGGTGTGGAACAGATGATGATGATACGGAGAAAAAGAGAGAGAAAAAGAAGAATAAGAAGAGCCATCCCTCCGTTGCCTCTCCCTCTATTGTGGCCAAACAGACAGTACGGACAGAGAAATAGTACGGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>290 198 180 120 60 49 33 31 25 7 7</canonical_bands>
                <polymorphic_bands>290 258 180 120 49 33 31 25 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>198 120 85 77 74 67 49 47 42 35 33 31 27 27 24 18 16 9 7 7 6 1</canonical_bands>
                <polymorphic_bands>198 120 85 77 74 67 49 47 42 35 33 31 30 27 27 18 16 9 7 7 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACGGAAGAAGATAACGAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTACCAATAAATAGCTCGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>393</pcr_amplicon_size>
		<canonical_amplicon>AACGGAAGAAGATAACGAAAGGTAAAATCTGCGATAGAAGGGTCCTTTTTAGCTTATTTATCTCGATTCTTGTAAAAGATACCAAAATTTTGTCATCTGACAAAACATTTCTGATAATATGATAAACAATTCATCAGTTGGTTATTTTTTGATATATTGCACAGGAATCGGGATAATTGAGGTTAAACTTGAAAGTGTGGGACCCTTGGATTGCAGGTTTTAAGGTATTTTACACTTTGTGAATCGGGTGTTTTTATTTAATTTAACATCAAAAAAAGTGAAAAATTTTAATTATAATGTAGTTCTGTTTGTCCAGAATTAAAAAAAAAGCAGGAAACATCGAAATTCGAAAGTATTTCAATTCTGAAAATTTTCGAGCTATTTATTGGTAAA</canonical_amplicon>
		<polymorphic_amplicon>AACGGAAGAAGATAACGAAAGGTAAAATCTGCGATAGAAGGGTCCTTTTTAGCTTATTTATCTCGATTCTTGTAAAAGATACCAAAATTTTGTCATCTGACAAAACATTTCTGATAATATGATAAACAATTCATCAGTTGGTTATTTTTTGATATATTGCACAGGAATCGGGATAATTGAGGTTAAACTTGAAAGTGTGGGACCCTTGGATTGCAGGTTTTAAGGTATTTTACACTTTGTGAATCGGGTGTTTTTATTTAATTTAACATCAAAAAAAGTGAAAAMTTTTAATTATAATGTAGTTCTGTTTGTCCAGAATTAAAAAAAAAGCAGGAAACATCGAAATTCGAAAGTATTTCAATTCTGAAAATTTTCGAGCTATTTATTGGTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36127</snp_id>
        <super_contig>c010500932.Contig1</super_contig>
        <contig_pos>32415</contig_pos>
        <strand></strand>
        <context>GTCCAGAATT[A/T]AAAAAAAAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAAAAGTGAAAAATTTTAATTATAATGTAGTTCTGTTTGTCCAGAATT</left_flank>
        <right_flank>AAAAAAAAGCAGGAAACATCGAAATTCGAAAGTATTTCAATTCTGAAAAT</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTAGTAATAATGTTGTCATTTAGGCATGAAGACATAGAAGAGATTTAGAGAAAGAGAGGATTCTGAATTGATGAGGAACGGAGATCGTTATCAGGTTATTTAGTGCAAGTAGTTAACCTATAAATCGAAAGATTTGTGGGAAAATTTGAGAAAAAGTTGAAAAGGTGTACTGGGAAAAACGGAAGAAGATAACGAAAGGTAAAATCTGCGATAGAAGGGTCCTTTTTAGCTTATTTATCTCGATTCTTGTAAAAGATACCAAAATTTTGTCATCTGACAAAACATTTCTGATAATATGATAAACAATTCATCAGTTGGTTATTTTTTGATATATTGCACAGGAATCGGGATAATTGAGGTTAAACTTGAAAGTGTGGGACCCTTGGATTGCAGGTTTTAAGGTATTTTACACTTTGTGAATCGGGTGTTTTTATTTAATTTAACATCAAAAAAAGTGAAAAATTTTAATTATAATGTAGTTCTGTTTGTCCAGAATTAAAAAAAAAGCAGGAAACATCGAAATTCGAAAGTATTTCAATTCTGAAAATTTTCGAGCTATTTATTGGTAAAAATGCAAATTCCGCATTTTTCAAGATTCCTGAACATGGAATCCGGCATGGTCAAAAATTTGGAATTTCAGTCAGAAAGAATGGTTGAAAATCACAAATTCCGAATTTTAGGCTCAAAATCAATTGATAAGTTTGTAACATTTTTCAGGCAAAAATCGGAAAAATCAAGATACTCTTTTTAATAAAAAATCGCAAAATTAAACTGTCCAGCCAGAAAAACCCGGGTAAAGTAGTTTCATAATGTTAGCGGAAAAGCGGGTCGCGGTGTGGAACAGATGATGATGATACGGAGAAAAAGAGAGAGAAAAAGAAGAATAAGAAGAGCCATCCCTCCGTTGCCTCTCCCTCTATTGTGGCCAAACAGACAGTACGGACAGAGAAATAGTACGGAAAGGAGAAGACACGCAGATAGTTAAAACGGAGAACAGA</canonical>
            <polymorphic>AATTAGTAATAATGTTGTCATTTAGGCATGAAGACATAGAAGAGATTTAGAGAAAGAGAGGATTCTGAATTGATGAGGAACGGAGATCGTTATCAGGTTATTTAGTGCAAGTAGTTAACCTATAAATCGAAAGATTTGTGGGAAAATTTGAGAAAAAGTTGAAAAGGTGTACTGGGAAAAACGGAAGAAGATAACGAAAGGTAAAATCTGCGATAGAAGGGTCCTTTTTAGCTTATTTATCTCGATTCTTGTAAAAGATACCAAAATTTTGTCATCTGACAAAACATTTCTGATAATATGATAAACAATTCATCAGTTGGTTATTTTTTGATATATTGCACAGGAATCGGGATAATTGAGGTTAAACTTGAAAGTGTGGGACCCTTGGATTGCAGGTTTTAAGGTATTTTACACTTTGTGAATCGGGTGTTTTTATTTAATTTAACATCAAAAAAAGTGAAAAATTTTAATTATAATGTAGTTCTGTTTGTCCAGAATTWAAAAAAAAGCAGGAAACATCGAAATTCGAAAGTATTTCAATTCTGAAAATTTTCGAGCTATTTATTGGTAAAAATGCAAATTCCGCATTTTTCAAGATTCCTGAACATGGAATCCGGCATGGTCAAAAATTTGGAATTTCAGTCAGAAAGAATGGTTGAAAATCACAAATTCCGAATTTTAGGCTCAAAATCAATTGATAAGTTTGTAACATTTTTCAGGCAAAAATCGGAAAAATCAAGATACTCTTTTTAATAAAAAATCGCAAAATTAAACTGTCCAGCCAGAAAAACCCGGGTAAAGTAGTTTCATAATGTTAGCGGAAAAGCGGGTCGCGGTGTGGAACAGATGATGATGATACGGAGAAAAAGAGAGAGAAAAAGAAGAATAAGAAGAGCCATCCCTCCGTTGCCTCTCCCTCTATTGTGGCCAAACAGACAGTACGGACAGAGAAATAGTACGGAAAGGAGAAGACACGCAGATAGTTAAAACGGAGAACAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>252 247 215 115 38 37 31 25 19 16 5</canonical_bands>
                <polymorphic_bands>283 247 215 115 38 37 25 19 16 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCGGGTGTTTTTATTTAATTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTGTGATTTTCAACCATTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCGGGTGTTTTTATTTAATTTAACATCAAAAAAAGTGAAAAATTTTAATTATAATGTAGTTCTGTTTGTCCAGAATTAAAAAAAAAGCAGGAAACATCGAAATTCGAAAGTATTTCAATTCTGAAAATTTTCGAGCTATTTATTGGTAAAAATGCAAATTCCGCATTTTTCAAGATTCCTGAACATGGAATCCGGCATGGTCAAAAATTTGGAATTTCAGTCAGAAAGAATGGTTGAAAATCACAAAT</canonical_amplicon>
		<polymorphic_amplicon>AATCGGGTGTTTTTATTTAATTTAACATCAAAAAAAGTGAAAAATTTTAATTATAATGTAGTTCTGTTTGTCCAGAATTWAAAAAAAAGCAGGAAACATCGAAATTCGAAAGTATTTCAATTCTGAAAATTTTCGAGCTATTTATTGGTAAAAATGCAAATTCCGCATTTTTCAAGATTCCTGAACATGGAATCCGGCATGGTCAAAAATTTGGAATTTCAGTCAGAAAGAATGGTTGAAAATCACAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36128</snp_id>
        <super_contig>c010601149.Contig1</super_contig>
        <contig_pos>4740</contig_pos>
        <strand></strand>
        <context>aatctgtcaa[C/T]tgataatatg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCGAGCTGAATTTTCACAGTAACTGTAATAGAAACCGAAAATCTGTCAA</left_flank>
        <right_flank>TGATAATATGTTACTGATATTATGATAAACATTGTAGCAGTTGACATTTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTCTGGAATAGCAATTTTTAGCTTGAAACAGAAAGGTCGAACTTGAGCTGTCTGCAGCCGACTAAATTTATCTCGGTTACTGTAAGAGGTATCAAAAAGCTGTCAATATATAAAATGTTTATCATAATATCAGTTACATTTTATTAATTGACGACTTTTCGTTATTTTTTACAGTAGCCGAGATAAATTGGGTCAAAGATGGATGGTTAGCAGAGGACAGCGTAGCTGAGCCGGAAACCGTTAGCTTCTAACTTCGAGTCGAATTTTCTAGATTCTTGTGACAGATACCAAAACTTTGTTAACTGGTAAAATGTTACTGATATCATGATAAACATTTCATCAGTCAACCACTTTTTAATAGCTGTTACAGTAATCGAGATAAATTGGTTCCAAATTTGAAGGTCGGCGGCGGACCGCGTAGCTGAGCCTGGAAGCGTCAGCTACTAACATCGAGCTGAATTTTCACAGTAACTGTAATAGAAACCGAAAATCTGTCAACTGATAATATGTTACTGATATTATGATAAACATTGTAGCAGTTGACATTTTTCTGATAGCTCCTACAGTAACCGAGATACCTAAATTTTGTGTCTGCCTACCTGCGCCGCTTTCTTATCTCCCTGATTTTTCAGCATTATATCCATATCATTCTTCCCCAAAAAATCCCACAAAATCTCCTTGTGTTCTGGTCCCGGACCCAGCATTTTTGCGGTTGGAATTTGCTGAAAATTATGCTAGAAAAATTTAAAAATCTGAAAAAACTGACAAAAATATAGCCATACAGTTCCAAGAAACTGATTTTTACAAAATCGAAAAATCGAAAAAAAAGTGAATTGGAAAAAATTTTTAATTCAGAAATTACAAAAAAAAATTGAGATGATCATGGGGAGAAAATCAGATCGGTGGAATTAAAATTTTCTTGGGGAAACCGTAAAAATTGGAATTTAAAAAAAAGAGATGTGTTAATTAAAGATAAATGGGATAATTGGGCAATTAAAA</canonical>
            <polymorphic>TGTCTGGAATAGCAATTTTTAGCTTGAAACAGAAAGGTCGAACTTGAGCTGTCTGCAGCCGACTAAATTTATCTCGGTTACTGTAAGAGGTATCAAAAAGCTGTCAATATATAAAATGTTTATCATAATATCAGTTACATTTTATTAATTGACGACTTTTCGTTATTTTTTACAGTAGCCGAGATAAATTGGGTCAAAGATGGATGGTTAGCAGAGGACAGCGTAGCTGAGCCGGAAACCGTTAGCTTCTAACTTCGAGTCGAATTTTCTAGATTCTTGTGACAGATACCAAAACTTTGTTAACTGGTAAAATGTTACTGATATCATGATAAACATTTCATCAGTCAACCACTTTTTAATAGCTGTTACAGTAATCGAGATAAATTGGTTCCAAATTTGAAGGTCGGCGGCGGACCGCGTAGCTGAGCCTGGAAGCGTCAGCTACTAACATCGAGCTGAATTTTCACAGTAACTGTAATAGAAACCGAAAATCTGTCAAYTGATAATATGTTACTGATATTATGATAAACATTGTAGCAGTTGACATTTTTCTGATAGCTCCTACAGTAACCGAGATACCTAAATTTTGTGTCTGCCTACCTGCGCCGCTTTCTTATCTCCCTGATTTTTCAGCATTATATCCATATCATTCTTCCCCAAAAAATCCCACAAAATCTCCTTGTGTTCTGGTCCCGGACCCAGCATTTTTGCGGTTGGAATTTGCTGAAAATTATGCTAGAAAAATTTAAAAATCTGAAAAAACTGACAAAAATATAGCCATACAGTTCCAAGAAACTGATTTTTACAAAATCGAAAAATCGAAAAAAAAGTGAATTGGAAAAAATTTTTAATTCAGAAATTACAAAAAAAAATTGAGATGATCATGGGGAGAAAATCAGATCGGTGGAATTAAAATTTTCTTGGGGAAACCGTAAAAATTGGAATTTAAAAAAAAGAGATGTGTTAATTAAAGATAAATGGGATAATTGGGCAATTAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>458 301 151 45 45</canonical_bands>
                <polymorphic_bands>458 301 196 45</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>458 301 151 45 45</canonical_bands>
                <polymorphic_bands>458 301 196 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAATAGCAATTTTTAGCTTGA</pcr_primer_p1>
		<pcr_primer_p2>GAAAAATCAGGGAGATAAGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>626</pcr_amplicon_size>
		<canonical_amplicon>GGAATAGCAATTTTTAGCTTGAAACAGAAAGGTCGAACTTGAGCTGTCTGCAGCCGACTAAATTTATCTCGGTTACTGTAAGAGGTATCAAAAAGCTGTCAATATATAAAATGTTTATCATAATATCAGTTACATTTTATTAATTGACGACTTTTCGTTATTTTTTACAGTAGCCGAGATAAATTGGGTCAAAGATGGATGGTTAGCAGAGGACAGCGTAGCTGAGCCGGAAACCGTTAGCTTCTAACTTCGAGTCGAATTTTCTAGATTCTTGTGACAGATACCAAAACTTTGTTAACTGGTAAAATGTTACTGATATCATGATAAACATTTCATCAGTCAACCACTTTTTAATAGCTGTTACAGTAATCGAGATAAATTGGTTCCAAATTTGAAGGTCGGCGGCGGACCGCGTAGCTGAGCCTGGAAGCGTCAGCTACTAACATCGAGCTGAATTTTCACAGTAACTGTAATAGAAACCGAAAATCTGTCAACTGATAATATGTTACTGATATTATGATAAACATTGTAGCAGTTGACATTTTTCTGATAGCTCCTACAGTAACCGAGATACCTAAATTTTGTGTCTGCCTACCTGCGCCGCTTTCTTATCTCCCTGATTTTTC</canonical_amplicon>
		<polymorphic_amplicon>GGAATAGCAATTTTTAGCTTGAAACAGAAAGGTCGAACTTGAGCTGTCTGCAGCCGACTAAATTTATCTCGGTTACTGTAAGAGGTATCAAAAAGCTGTCAATATATAAAATGTTTATCATAATATCAGTTACATTTTATTAATTGACGACTTTTCGTTATTTTTTACAGTAGCCGAGATAAATTGGGTCAAAGATGGATGGTTAGCAGAGGACAGCGTAGCTGAGCCGGAAACCGTTAGCTTCTAACTTCGAGTCGAATTTTCTAGATTCTTGTGACAGATACCAAAACTTTGTTAACTGGTAAAATGTTACTGATATCATGATAAACATTTCATCAGTCAACCACTTTTTAATAGCTGTTACAGTAATCGAGATAAATTGGTTCCAAATTTGAAGGTCGGCGGCGGACCGCGTAGCTGAGCCTGGAAGCGTCAGCTACTAACATCGAGCTGAATTTTCACAGTAACTGTAATAGAAACCGAAAATCTGTCAAYTGATAATATGTTACTGATATTATGATAAACATTGTAGCAGTTGACATTTTTCTGATAGCTCCTACAGTAACCGAGATACCTAAATTTTGTGTCTGCCTACCTGCGCCGCTTTCTTATCTCCCTGATTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36129</snp_id>
        <super_contig>c010601149.Contig1</super_contig>
        <contig_pos>5169</contig_pos>
        <strand>+</strand>
        <context>TCTTGGGGAA[A/G]CCGTAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATCATGGGGAGAAAATCAGATCGGTGGAATTAAAATTTTCTTGGGGAA</left_flank>
        <right_flank>CCGTAAAAATTGGAATTTAAAAAAAAGAGATGTGTTAATTAAAGATAAAT</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAAGCGTCAGCTACTAACATCGAGCTGAATTTTCACAGTAACTGTAATAGAAACCGAAAATCTGTCAACTGATAATATGTTACTGATATTATGATAAACATTGTAGCAGTTGACATTTTTCTGATAGCTCCTACAGTAACCGAGATACCTAAATTTTGTGTCTGCCTACCTGCGCCGCTTTCTTATCTCCCTGATTTTTCAGCATTATATCCATATCATTCTTCCCCAAAAAATCCCACAAAATCTCCTTGTGTTCTGGTCCCGGACCCAGCATTTTTGCGGTTGGAATTTGCTGAAAATTATGCTAGAAAAATTTAAAAATCTGAAAAAACTGACAAAAATATAGCCATACAGTTCCAAGAAACTGATTTTTACAAAATCGAAAAATCGAAAAAAAAGTGAATTGGAAAAAATTTTTAATTCAGAAATTACAAAAAAAAATTGAGATGATCATGGGGAGAAAATCAGATCGGTGGAATTAAAATTTTCTTGGGGAAACCGTAAAAATTGGAATTTAAAAAAAAGAGATGTGTTAATTAAAGATAAATGGGATAATTGGGCAATTAAAAAATTGAAAAAATTGAAAAAAAAATTGGGTTGATTGGGCAATTAATTAAACAAATAATTAGTCCTTGTTCTCGGCAGTCATTCTCTTCATAAATTTATCAATAATCTCCTCATGATGCTTGACTTTATATCTCAGCTCGTTGTTCGATTCTTCCAAATTTGAAATCTTCAAATTTGCCTTCAAAATCTCAGATTTCAGCTTTTCCTCCGTTTCTGACGATGCATTCTGATTTTGGCTGAAAATTTTAATTTTTAAACTTTTACAGTAATCCTAAATTTCGACTTTTAGAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTCAGAATCAAGAAACCACTTAAATTCTCAGAAATTCGAATTTTCAATTTGTTTGAAAATCTGAAGTTTTCGAAAAAAAAATTTCAAGTTCTGATTTTTTCTGGAT</canonical>
            <polymorphic>TGGAAGCGTCAGCTACTAACATCGAGCTGAATTTTCACAGTAACTGTAATAGAAACCGAAAATCTGTCAACTGATAATATGTTACTGATATTATGATAAACATTGTAGCAGTTGACATTTTTCTGATAGCTCCTACAGTAACCGAGATACCTAAATTTTGTGTCTGCCTACCTGCGCCGCTTTCTTATCTCCCTGATTTTTCAGCATTATATCCATATCATTCTTCCCCAAAAAATCCCACAAAATCTCCTTGTGTTCTGGTCCCGGACCCAGCATTTTTGCGGTTGGAATTTGCTGAAAATTATGCTAGAAAAATTTAAAAATCTGAAAAAACTGACAAAAATATAGCCATACAGTTCCAAGAAACTGATTTTTACAAAATCGAAAAATCGAAAAAAAAGTGAATTGGAAAAAATTTTTAATTCAGAAATTACAAAAAAAAATTGAGATGATCATGGGGAGAAAATCAGATCGGTGGAATTAAAATTTTCTTGGGGAARCCGTAAAAATTGGAATTTAAAAAAAAGAGATGTGTTAATTAAAGATAAATGGGATAATTGGGCAATTAAAAAATTGAAAAAATTGAAAAAAAAATTGGGTTGATTGGGCAATTAATTAAACAAATAATTAGTCCTTGTTCTCGGCAGTCATTCTCTTCATAAATTTATCAATAATCTCCTCATGATGCTTGACTTTATATCTCAGCTCGTTGTTCGATTCTTCCAAATTTGAAATCTTCAAATTTGCCTTCAAAATCTCAGATTTCAGCTTTTCCTCCGTTTCTGACGATGCATTCTGATTTTGGCTGAAAATTTTAATTTTTAAACTTTTACAGTAATCCTAAATTTCGACTTTTAGAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTCAGAATCAAGAAACCACTTAAATTCTCAGAAATTCGAATTTTCAATTTGTTTGAAAATCTGAAGTTTTCGAAAAAAAAATTTCAAGTTCTGATTTTTTCTGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>332 218 166 147 92 39 6</canonical_bands>
                <polymorphic_bands>479 218 166 92 39 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCTAGAAAAATTTAAAAATCTGA</pcr_primer_p1>
		<pcr_primer_p2>CCAATTATCCCATTTATCTTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TGCTAGAAAAATTTAAAAATCTGAAAAAACTGACAAAAATATAGCCATACAGTTCCAAGAAACTGATTTTTACAAAATCGAAAAATCGAAAAAAAAGTGAATTGGAAAAAATTTTTAATTCAGAAATTACAAAAAAAAATTGAGATGATCATGGGGAGAAAATCAGATCGGTGGAATTAAAATTTTCTTGGGGAAACCGTAAAAATTGGAATTTAAAAAAAAGAGATGTGTTAATTAAAGATAAATGGGATAATTGG</canonical_amplicon>
		<polymorphic_amplicon>TGCTAGAAAAATTTAAAAATCTGAAAAAACTGACAAAAATATAGCCATACAGTTCCAAGAAACTGATTTTTACAAAATCGAAAAATCGAAAAAAAAGTGAATTGGAAAAAATTTTTAATTCAGAAATTACAAAAAAAAATTGAGATGATCATGGGGAGAAAATCAGATCGGTGGAATTAAAATTTTCTTGGGGAARCCGTAAAAATTGGAATTTAAAAAAAAGAGATGTGTTAATTAAAGATAAATGGGATAATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36130</snp_id>
        <super_contig>c010601149.Contig1</super_contig>
        <contig_pos>5187</contig_pos>
        <strand>+</strand>
        <context>AATTGGAATT[A/G]AAAAAAAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGATCGGTGGAATTAAAATTTTCTTGGGGAAACCGTAAAAATTGGAATT</left_flank>
        <right_flank>AAAAAAAAGAGATGTGTTAATTAAAGATAAATGGGATAATTGGGCAATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATCGAGCTGAATTTTCACAGTAACTGTAATAGAAACCGAAAATCTGTCAACTGATAATATGTTACTGATATTATGATAAACATTGTAGCAGTTGACATTTTTCTGATAGCTCCTACAGTAACCGAGATACCTAAATTTTGTGTCTGCCTACCTGCGCCGCTTTCTTATCTCCCTGATTTTTCAGCATTATATCCATATCATTCTTCCCCAAAAAATCCCACAAAATCTCCTTGTGTTCTGGTCCCGGACCCAGCATTTTTGCGGTTGGAATTTGCTGAAAATTATGCTAGAAAAATTTAAAAATCTGAAAAAACTGACAAAAATATAGCCATACAGTTCCAAGAAACTGATTTTTACAAAATCGAAAAATCGAAAAAAAAGTGAATTGGAAAAAATTTTTAATTCAGAAATTACAAAAAAAAATTGAGATGATCATGGGGAGAAAATCAGATCGGTGGAATTAAAATTTTCTTGGGGAAACCGTAAAAATTGGAATTTAAAAAAAAGAGATGTGTTAATTAAAGATAAATGGGATAATTGGGCAATTAAAAAATTGAAAAAATTGAAAAAAAAATTGGGTTGATTGGGCAATTAATTAAACAAATAATTAGTCCTTGTTCTCGGCAGTCATTCTCTTCATAAATTTATCAATAATCTCCTCATGATGCTTGACTTTATATCTCAGCTCGTTGTTCGATTCTTCCAAATTTGAAATCTTCAAATTTGCCTTCAAAATCTCAGATTTCAGCTTTTCCTCCGTTTCTGACGATGCATTCTGATTTTGGCTGAAAATTTTAATTTTTAAACTTTTACAGTAATCCTAAATTTCGACTTTTAGAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTCAGAATCAAGAAACCACTTAAATTCTCAGAAATTCGAATTTTCAATTTGTTTGAAAATCTGAAGTTTTCGAAAAAAAAATTTCAAGTTCTGATTTTTTCTGGATTACAGTAGTTTTTTATTA</canonical>
            <polymorphic>ACATCGAGCTGAATTTTCACAGTAACTGTAATAGAAACCGAAAATCTGTCAACTGATAATATGTTACTGATATTATGATAAACATTGTAGCAGTTGACATTTTTCTGATAGCTCCTACAGTAACCGAGATACCTAAATTTTGTGTCTGCCTACCTGCGCCGCTTTCTTATCTCCCTGATTTTTCAGCATTATATCCATATCATTCTTCCCCAAAAAATCCCACAAAATCTCCTTGTGTTCTGGTCCCGGACCCAGCATTTTTGCGGTTGGAATTTGCTGAAAATTATGCTAGAAAAATTTAAAAATCTGAAAAAACTGACAAAAATATAGCCATACAGTTCCAAGAAACTGATTTTTACAAAATCGAAAAATCGAAAAAAAAGTGAATTGGAAAAAATTTTTAATTCAGAAATTACAAAAAAAAATTGAGATGATCATGGGGAGAAAATCAGATCGGTGGAATTAAAATTTTCTTGGGGAAACCGTAAAAATTGGAATTRAAAAAAAAGAGATGTGTTAATTAAAGATAAATGGGATAATTGGGCAATTAAAAAATTGAAAAAATTGAAAAAAAAATTGGGTTGATTGGGCAATTAATTAAACAAATAATTAGTCCTTGTTCTCGGCAGTCATTCTCTTCATAAATTTATCAATAATCTCCTCATGATGCTTGACTTTATATCTCAGCTCGTTGTTCGATTCTTCCAAATTTGAAATCTTCAAATTTGCCTTCAAAATCTCAGATTTCAGCTTTTCCTCCGTTTCTGACGATGCATTCTGATTTTGGCTGAAAATTTTAATTTTTAAACTTTTACAGTAATCCTAAATTTCGACTTTTAGAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTCAGAATCAAGAAACCACTTAAATTCTCAGAAATTCGAATTTTCAATTTGTTTGAAAATCTGAAGTTTTCGAAAAAAAAATTTCAAGTTCTGATTTTTTCTGGATTACAGTAGTTTTTTATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>148 135 124 100 71 70 64 45 41 33 29 26 25 23 15 11 10 8 8 8 6</canonical_bands>
                <polymorphic_bands>177 135 124 100 71 70 64 45 41 33 26 25 23 15 11 10 8 8 8 6</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>305 300 200 195</canonical_bands>
                <polymorphic_bands>505 300 195</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>299 199 104 102 92 62 46 36 27 18 7 4 4</canonical_bands>
                <polymorphic_bands>299 199 104 102 92 62 54 46 27 7 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAGATCGGTGGAATTAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAACAACGAGCTGAGATATAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCAGATCGGTGGAATTAAAATTTTCTTGGGGAAACCGTAAAAATTGGAATTTAAAAAAAAGAGATGTGTTAATTAAAGATAAATGGGATAATTGGGCAATTAAAAAATTGAAAAAATTGAAAAAAAAATTGGGTTGATTGGGCAATTAATTAAACAAATAATTAGTCCTTGTTCTCGGCAGTCATTCTCTTCATAAATTTATCAATAATCTCCTCATGATGCTTGACTTTATATCTCAGCTCGTTGTTC</canonical_amplicon>
		<polymorphic_amplicon>ATCAGATCGGTGGAATTAAAATTTTCTTGGGGAAACCGTAAAAATTGGAATTRAAAAAAAAGAGATGTGTTAATTAAAGATAAATGGGATAATTGGGCAATTAAAAAATTGAAAAAATTGAAAAAAAAATTGGGTTGATTGGGCAATTAATTAAACAAATAATTAGTCCTTGTTCTCGGCAGTCATTCTCTTCATAAATTTATCAATAATCTCCTCATGATGCTTGACTTTATATCTCAGCTCGTTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36131</snp_id>
        <super_contig>c010601149.Contig1</super_contig>
        <contig_pos>5203</contig_pos>
        <strand></strand>
        <context>AAAGAGATGT[G/A]TTAATTAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAATTTTCTTGGGGAAACCGTAAAAATTGGAATTTAAAAAAAAGAGATGT</left_flank>
        <right_flank>TTAATTAAAGATAAATGGGATAATTGGGCAATTAAAAAATTGAAAAAATT</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACAGTAACTGTAATAGAAACCGAAAATCTGTCAACTGATAATATGTTACTGATATTATGATAAACATTGTAGCAGTTGACATTTTTCTGATAGCTCCTACAGTAACCGAGATACCTAAATTTTGTGTCTGCCTACCTGCGCCGCTTTCTTATCTCCCTGATTTTTCAGCATTATATCCATATCATTCTTCCCCAAAAAATCCCACAAAATCTCCTTGTGTTCTGGTCCCGGACCCAGCATTTTTGCGGTTGGAATTTGCTGAAAATTATGCTAGAAAAATTTAAAAATCTGAAAAAACTGACAAAAATATAGCCATACAGTTCCAAGAAACTGATTTTTACAAAATCGAAAAATCGAAAAAAAAGTGAATTGGAAAAAATTTTTAATTCAGAAATTACAAAAAAAAATTGAGATGATCATGGGGAGAAAATCAGATCGGTGGAATTAAAATTTTCTTGGGGAAACCGTAAAAATTGGAATTTAAAAAAAAGAGATGTGTTAATTAAAGATAAATGGGATAATTGGGCAATTAAAAAATTGAAAAAATTGAAAAAAAAATTGGGTTGATTGGGCAATTAATTAAACAAATAATTAGTCCTTGTTCTCGGCAGTCATTCTCTTCATAAATTTATCAATAATCTCCTCATGATGCTTGACTTTATATCTCAGCTCGTTGTTCGATTCTTCCAAATTTGAAATCTTCAAATTTGCCTTCAAAATCTCAGATTTCAGCTTTTCCTCCGTTTCTGACGATGCATTCTGATTTTGGCTGAAAATTTTAATTTTTAAACTTTTACAGTAATCCTAAATTTCGACTTTTAGAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTCAGAATCAAGAAACCACTTAAATTCTCAGAAATTCGAATTTTCAATTTGTTTGAAAATCTGAAGTTTTCGAAAAAAAAATTTCAAGTTCTGATTTTTTCTGGATTACAGTAGTTTTTTATTACTGTAGTTTATTTTTA</canonical>
            <polymorphic>TCACAGTAACTGTAATAGAAACCGAAAATCTGTCAACTGATAATATGTTACTGATATTATGATAAACATTGTAGCAGTTGACATTTTTCTGATAGCTCCTACAGTAACCGAGATACCTAAATTTTGTGTCTGCCTACCTGCGCCGCTTTCTTATCTCCCTGATTTTTCAGCATTATATCCATATCATTCTTCCCCAAAAAATCCCACAAAATCTCCTTGTGTTCTGGTCCCGGACCCAGCATTTTTGCGGTTGGAATTTGCTGAAAATTATGCTAGAAAAATTTAAAAATCTGAAAAAACTGACAAAAATATAGCCATACAGTTCCAAGAAACTGATTTTTACAAAATCGAAAAATCGAAAAAAAAGTGAATTGGAAAAAATTTTTAATTCAGAAATTACAAAAAAAAATTGAGATGATCATGGGGAGAAAATCAGATCGGTGGAATTAAAATTTTCTTGGGGAAACCGTAAAAATTGGAATTTAAAAAAAAGAGATGTRTTAATTAAAGATAAATGGGATAATTGGGCAATTAAAAAATTGAAAAAATTGAAAAAAAAATTGGGTTGATTGGGCAATTAATTAAACAAATAATTAGTCCTTGTTCTCGGCAGTCATTCTCTTCATAAATTTATCAATAATCTCCTCATGATGCTTGACTTTATATCTCAGCTCGTTGTTCGATTCTTCCAAATTTGAAATCTTCAAATTTGCCTTCAAAATCTCAGATTTCAGCTTTTCCTCCGTTTCTGACGATGCATTCTGATTTTGGCTGAAAATTTTAATTTTTAAACTTTTACAGTAATCCTAAATTTCGACTTTTAGAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTCAGAATCAAGAAACCACTTAAATTCTCAGAAATTCGAATTTTCAATTTGTTTGAAAATCTGAAGTTTTCGAAAAAAAAATTTCAAGTTCTGATTTTTTCTGGATTACAGTAGTTTTTTATTACTGTAGTTTATTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>378 148 125 122 78 74 57 15 3</canonical_bands>
                <polymorphic_bands>435 148 125 122 78 74 15 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAGATCGGTGGAATTAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAACAACGAGCTGAGATATAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCAGATCGGTGGAATTAAAATTTTCTTGGGGAAACCGTAAAAATTGGAATTTAAAAAAAAGAGATGTGTTAATTAAAGATAAATGGGATAATTGGGCAATTAAAAAATTGAAAAAATTGAAAAAAAAATTGGGTTGATTGGGCAATTAATTAAACAAATAATTAGTCCTTGTTCTCGGCAGTCATTCTCTTCATAAATTTATCAATAATCTCCTCATGATGCTTGACTTTATATCTCAGCTCGTTGTTC</canonical_amplicon>
		<polymorphic_amplicon>ATCAGATCGGTGGAATTAAAATTTTCTTGGGGAAACCGTAAAAATTGGAATTTAAAAAAAAGAGATGTRTTAATTAAAGATAAATGGGATAATTGGGCAATTAAAAAATTGAAAAAATTGAAAAAAAAATTGGGTTGATTGGGCAATTAATTAAACAAATAATTAGTCCTTGTTCTCGGCAGTCATTCTCTTCATAAATTTATCAATAATCTCCTCATGATGCTTGACTTTATATCTCAGCTCGTTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36132</snp_id>
        <super_contig>c010601149.Contig1</super_contig>
        <contig_pos>5293</contig_pos>
        <strand>+</strand>
        <context>AATTAAACAA[A/T]TAATTAGTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGAAAAAATTGAAAAAAAAATTGGGTTGATTGGGCAATTAATTAAACAA</left_flank>
        <right_flank>TAATTAGTCCTTGTTCTCGGCAGTCATTCTCTTCATAAATTTATCAATAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAGCTCCTACAGTAACCGAGATACCTAAATTTTGTGTCTGCCTACCTGCGCCGCTTTCTTATCTCCCTGATTTTTCAGCATTATATCCATATCATTCTTCCCCAAAAAATCCCACAAAATCTCCTTGTGTTCTGGTCCCGGACCCAGCATTTTTGCGGTTGGAATTTGCTGAAAATTATGCTAGAAAAATTTAAAAATCTGAAAAAACTGACAAAAATATAGCCATACAGTTCCAAGAAACTGATTTTTACAAAATCGAAAAATCGAAAAAAAAGTGAATTGGAAAAAATTTTTAATTCAGAAATTACAAAAAAAAATTGAGATGATCATGGGGAGAAAATCAGATCGGTGGAATTAAAATTTTCTTGGGGAAACCGTAAAAATTGGAATTTAAAAAAAAGAGATGTGTTAATTAAAGATAAATGGGATAATTGGGCAATTAAAAAATTGAAAAAATTGAAAAAAAAATTGGGTTGATTGGGCAATTAATTAAACAAATAATTAGTCCTTGTTCTCGGCAGTCATTCTCTTCATAAATTTATCAATAATCTCCTCATGATGCTTGACTTTATATCTCAGCTCGTTGTTCGATTCTTCCAAATTTGAAATCTTCAAATTTGCCTTCAAAATCTCAGATTTCAGCTTTTCCTCCGTTTCTGACGATGCATTCTGATTTTGGCTGAAAATTTTAATTTTTAAACTTTTACAGTAATCCTAAATTTCGACTTTTAGAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTCAGAATCAAGAAACCACTTAAATTCTCAGAAATTCGAATTTTCAATTTGTTTGAAAATCTGAAGTTTTCGAAAAAAAAATTTCAAGTTCTGATTTTTTCTGGATTACAGTAGTTTTTTATTACTGTAGTTTATTTTTAGACTACAGTAATCCAAAAAGAATCATTGCTCACCTTAAAAGCTGACCCATGTGCTCAGCTCGTTCCAATAGTTGTTTATTGAGCAATTCC</canonical>
            <polymorphic>GATAGCTCCTACAGTAACCGAGATACCTAAATTTTGTGTCTGCCTACCTGCGCCGCTTTCTTATCTCCCTGATTTTTCAGCATTATATCCATATCATTCTTCCCCAAAAAATCCCACAAAATCTCCTTGTGTTCTGGTCCCGGACCCAGCATTTTTGCGGTTGGAATTTGCTGAAAATTATGCTAGAAAAATTTAAAAATCTGAAAAAACTGACAAAAATATAGCCATACAGTTCCAAGAAACTGATTTTTACAAAATCGAAAAATCGAAAAAAAAGTGAATTGGAAAAAATTTTTAATTCAGAAATTACAAAAAAAAATTGAGATGATCATGGGGAGAAAATCAGATCGGTGGAATTAAAATTTTCTTGGGGAAACCGTAAAAATTGGAATTTAAAAAAAAGAGATGTGTTAATTAAAGATAAATGGGATAATTGGGCAATTAAAAAATTGAAAAAATTGAAAAAAAAATTGGGTTGATTGGGCAATTAATTAAACAAWTAATTAGTCCTTGTTCTCGGCAGTCATTCTCTTCATAAATTTATCAATAATCTCCTCATGATGCTTGACTTTATATCTCAGCTCGTTGTTCGATTCTTCCAAATTTGAAATCTTCAAATTTGCCTTCAAAATCTCAGATTTCAGCTTTTCCTCCGTTTCTGACGATGCATTCTGATTTTGGCTGAAAATTTTAATTTTTAAACTTTTACAGTAATCCTAAATTTCGACTTTTAGAGTTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTCAGAATCAAGAAACCACTTAAATTCTCAGAAATTCGAATTTTCAATTTGTTTGAAAATCTGAAGTTTTCGAAAAAAAAATTTCAAGTTCTGATTTTTTCTGGATTACAGTAGTTTTTTATTACTGTAGTTTATTTTTAGACTACAGTAATCCAAAAAGAATCATTGCTCACCTTAAAAGCTGACCCATGTGCTCAGCTCGTTCCAATAGTTGTTTATTGAGCAATTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAGATCGGTGGAATTAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAACAACGAGCTGAGATATAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCAGATCGGTGGAATTAAAATTTTCTTGGGGAAACCGTAAAAATTGGAATTTAAAAAAAAGAGATGTGTTAATTAAAGATAAATGGGATAATTGGGCAATTAAAAAATTGAAAAAATTGAAAAAAAAATTGGGTTGATTGGGCAATTAATTAAACAAATAATTAGTCCTTGTTCTCGGCAGTCATTCTCTTCATAAATTTATCAATAATCTCCTCATGATGCTTGACTTTATATCTCAGCTCGTTGTTC</canonical_amplicon>
		<polymorphic_amplicon>ATCAGATCGGTGGAATTAAAATTTTCTTGGGGAAACCGTAAAAATTGGAATTTAAAAAAAAGAGATGTGTTAATTAAAGATAAATGGGATAATTGGGCAATTAAAAAATTGAAAAAATTGAAAAAAAAATTGGGTTGATTGGGCAATTAATTAAACAAWTAATTAGTCCTTGTTCTCGGCAGTCATTCTCTTCATAAATTTATCAATAATCTCCTCATGATGCTTGACTTTATATCTCAGCTCGTTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36133</snp_id>
        <super_contig>c010601176.Contig1</super_contig>
        <contig_pos>12844</contig_pos>
        <strand>+</strand>
        <context>AAAGGTCAAA[A/G]TCCCACGGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTTTTTAAAAAGTCATTTTGCCCGAAACAAAAAATTAAAAAAGGTCAAA</left_flank>
        <right_flank>TCCCACGGAAAATCACCGATAAAGAACAAATCGTATACGAAAAAAAGTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCGTGTTTGCGGACTTTTATTTTTTCTCACCCATTTTTTACCCATTTTGCACCCATTTTCTTCCTATTTTCGGGGAGAAATCCATGAAAATCTTGGAATTTTTTTAAAAAATTTTGTCGCAGAATATTTTTTATCAATGTTTTCAAATTTTCAAGTGTCGGTTATCAGTAAAATTCGTAGAGACATGTTTTTTCGAAATTTTTTGTGTCAACGAAAAATAATTTTTTTCGGATTATTTGAAACGTCGGCATCGTGTGGAATGGAAGATTTGTGACTCTGGAAATCCTGTGAAACTGAAAAAATCCGAAAATTTGGAAAAAATAATTTTTTTCTGAAAGAATATTTTTTAATTGATAATGCAATTTTCATTGAAAATGTGCTGTTTTCTGCTGGAAATTCTTTTTTTGCCATCAAAATTCGATATTTTCAGATTTAATCCCCTAAAAACCCTTTTTAAAAAGTCATTTTGCCCGAAACAAAAAATTAAAAAAGGTCAAAATCCCACGGAAAATCACCGATAAAGAACAAATCGTATACGAAAAAAAGTCGTTTTTTTGCAGCCAACACACAGAGACGTCACATCGGCGCGCTTCGTGTCAATGTGTCTGACGCCGCTGGCCAGGTCTTCCCCATCAGACCATTCCTCTCGCTTATCAGTGACTATTTTCTGTGACTTTTGATAAATTCAATAAATTTTGTTCAGTGAAAAATTTGAAATTTTGGCTTTGAAATTCTTAAAATTCCCTTCAAAAGTTCTGAAAATCCAAAATTTTTGAAAAATTGAAAAAAAAACGAAAATTATACCTTTTTGCCCTATTAAGCTCCTAAAAACACCTTATATTTTGTCTGGAAAAAATCCGAAATTCTGAATTTCTAGCTCAAAAAATTCCAAAGTTTTCCAATCATTTACTAAAAAATGCTAAATTTCCAGCCCAAAAAATTCAAATTTCCCCCGTTTTTTTTGCTGTTTTAAGTCAAAATTTATATTTGGGAACCCCA</canonical>
            <polymorphic>GCCGTGTTTGCGGACTTTTATTTTTTCTCACCCATTTTTTACCCATTTTGCACCCATTTTCTTCCTATTTTCGGGGAGAAATCCATGAAAATCTTGGAATTTTTTTAAAAAATTTTGTCGCAGAATATTTTTTATCAATGTTTTCAAATTTTCAAGTGTCGGTTATCAGTAAAATTCGTAGAGACATGTTTTTTCGAAATTTTTTGTGTCAACGAAAAATAATTTTTTTCGGATTATTTGAAACGTCGGCATCGTGTGGAATGGAAGATTTGTGACTCTGGAAATCCTGTGAAACTGAAAAAATCCGAAAATTTGGAAAAAATAATTTTTTTCTGAAAGAATATTTTTTAATTGATAATGCAATTTTCATTGAAAATGTGCTGTTTTCTGCTGGAAATTCTTTTTTTGCCATCAAAATTCGATATTTTCAGATTTAATCCCCTAAAAACCCTTTTTAAAAAGTCATTTTGCCCGAAACAAAAAATTAAAAAAGGTCAAARTCCCACGGAAAATCACCGATAAAGAACAAATCGTATACGAAAAAAAGTCGTTTTTTTGCAGCCAACACACAGAGACGTCACATCGGCGCGCTTCGTGTCAATGTGTCTGACGCCGCTGGCCAGGTCTTCCCCATCAGACCATTCCTCTCGCTTATCAGTGACTATTTTCTGTGACTTTTGATAAATTCAATAAATTTTGTTCAGTGAAAAATTTGAAATTTTGGCTTTGAAATTCTTAAAATTCCCTTCAAAAGTTCTGAAAATCCAAAATTTTTGAAAAATTGAAAAAAAAACGAAAATTATACCTTTTTGCCCTATTAAGCTCCTAAAAACACCTTATATTTTGTCTGGAAAAAATCCGAAATTCTGAATTTCTAGCTCAAAAAATTCCAAAGTTTTCCAATCATTTACTAAAAAATGCTAAATTTCCAGCCCAAAAAATTCAAATTTCCCCCGTTTTTTTTGCTGTTTTAAGTCAAAATTTATATTTGGGAACCCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCAGATTTAATCCCCTAAA</pcr_primer_p1>
		<pcr_primer_p2>CACAGAAAATAGTCACTGATAAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCAGATTTAATCCCCTAAAAACCCTTTTTAAAAAGTCATTTTGCCCGAAACAAAAAATTAAAAAAGGTCAAAATCCCACGGAAAATCACCGATAAAGAACAAATCGTATACGAAAAAAAGTCGTTTTTTTGCAGCCAACACACAGAGACGTCACATCGGCGCGCTTCGTGTCAATGTGTCTGACGCCGCTGGCCAGGTCTTCCCCATCAGACCATTCCTCTCGCTTATCAGTGACTATTTTCTGTG</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCAGATTTAATCCCCTAAAAACCCTTTTTAAAAAGTCATTTTGCCCGAAACAAAAAATTAAAAAAGGTCAAARTCCCACGGAAAATCACCGATAAAGAACAAATCGTATACGAAAAAAAGTCGTTTTTTTGCAGCCAACACACAGAGACGTCACATCGGCGCGCTTCGTGTCAATGTGTCTGACGCCGCTGGCCAGGTCTTCCCCATCAGACCATTCCTCTCGCTTATCAGTGACTATTTTCTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36134</snp_id>
        <super_contig>c010601176.Contig1</super_contig>
        <contig_pos>12884</contig_pos>
        <strand>+</strand>
        <context>ATCGTATACG[A/G]AAAAAAGTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGGTCAAAATCCCACGGAAAATCACCGATAAAGAACAAATCGTATACG</left_flank>
        <right_flank>AAAAAAGTCGTTTTTTTGCAGCCAACACACAGAGACGTCACATCGGCGCG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCCATTTTGCACCCATTTTCTTCCTATTTTCGGGGAGAAATCCATGAAAATCTTGGAATTTTTTTAAAAAATTTTGTCGCAGAATATTTTTTATCAATGTTTTCAAATTTTCAAGTGTCGGTTATCAGTAAAATTCGTAGAGACATGTTTTTTCGAAATTTTTTGTGTCAACGAAAAATAATTTTTTTCGGATTATTTGAAACGTCGGCATCGTGTGGAATGGAAGATTTGTGACTCTGGAAATCCTGTGAAACTGAAAAAATCCGAAAATTTGGAAAAAATAATTTTTTTCTGAAAGAATATTTTTTAATTGATAATGCAATTTTCATTGAAAATGTGCTGTTTTCTGCTGGAAATTCTTTTTTTGCCATCAAAATTCGATATTTTCAGATTTAATCCCCTAAAAACCCTTTTTAAAAAGTCATTTTGCCCGAAACAAAAAATTAAAAAAGGTCAAAATCCCACGGAAAATCACCGATAAAGAACAAATCGTATACGAAAAAAAGTCGTTTTTTTGCAGCCAACACACAGAGACGTCACATCGGCGCGCTTCGTGTCAATGTGTCTGACGCCGCTGGCCAGGTCTTCCCCATCAGACCATTCCTCTCGCTTATCAGTGACTATTTTCTGTGACTTTTGATAAATTCAATAAATTTTGTTCAGTGAAAAATTTGAAATTTTGGCTTTGAAATTCTTAAAATTCCCTTCAAAAGTTCTGAAAATCCAAAATTTTTGAAAAATTGAAAAAAAAACGAAAATTATACCTTTTTGCCCTATTAAGCTCCTAAAAACACCTTATATTTTGTCTGGAAAAAATCCGAAATTCTGAATTTCTAGCTCAAAAAATTCCAAAGTTTTCCAATCATTTACTAAAAAATGCTAAATTTCCAGCCCAAAAAATTCAAATTTCCCCCGTTTTTTTTGCTGTTTTAAGTCAAAATTTATATTTGGGAACCCCAAAAATAGAAAATTCTAGAAAAATTCCCATATCCACAAGTT</canonical>
            <polymorphic>ACCCATTTTGCACCCATTTTCTTCCTATTTTCGGGGAGAAATCCATGAAAATCTTGGAATTTTTTTAAAAAATTTTGTCGCAGAATATTTTTTATCAATGTTTTCAAATTTTCAAGTGTCGGTTATCAGTAAAATTCGTAGAGACATGTTTTTTCGAAATTTTTTGTGTCAACGAAAAATAATTTTTTTCGGATTATTTGAAACGTCGGCATCGTGTGGAATGGAAGATTTGTGACTCTGGAAATCCTGTGAAACTGAAAAAATCCGAAAATTTGGAAAAAATAATTTTTTTCTGAAAGAATATTTTTTAATTGATAATGCAATTTTCATTGAAAATGTGCTGTTTTCTGCTGGAAATTCTTTTTTTGCCATCAAAATTCGATATTTTCAGATTTAATCCCCTAAAAACCCTTTTTAAAAAGTCATTTTGCCCGAAACAAAAAATTAAAAAAGGTCAAAATCCCACGGAAAATCACCGATAAAGAACAAATCGTATACGRAAAAAAGTCGTTTTTTTGCAGCCAACACACAGAGACGTCACATCGGCGCGCTTCGTGTCAATGTGTCTGACGCCGCTGGCCAGGTCTTCCCCATCAGACCATTCCTCTCGCTTATCAGTGACTATTTTCTGTGACTTTTGATAAATTCAATAAATTTTGTTCAGTGAAAAATTTGAAATTTTGGCTTTGAAATTCTTAAAATTCCCTTCAAAAGTTCTGAAAATCCAAAATTTTTGAAAAATTGAAAAAAAAACGAAAATTATACCTTTTTGCCCTATTAAGCTCCTAAAAACACCTTATATTTTGTCTGGAAAAAATCCGAAATTCTGAATTTCTAGCTCAAAAAATTCCAAAGTTTTCCAATCATTTACTAAAAAATGCTAAATTTCCAGCCCAAAAAATTCAAATTTCCCCCGTTTTTTTTGCTGTTTTAAGTCAAAATTTATATTTGGGAACCCCAAAAATAGAAAATTCTAGAAAAATTCCCATATCCACAAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCAGATTTAATCCCCTAAA</pcr_primer_p1>
		<pcr_primer_p2>CACAGAAAATAGTCACTGATAAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCAGATTTAATCCCCTAAAAACCCTTTTTAAAAAGTCATTTTGCCCGAAACAAAAAATTAAAAAAGGTCAAAATCCCACGGAAAATCACCGATAAAGAACAAATCGTATACGAAAAAAAGTCGTTTTTTTGCAGCCAACACACAGAGACGTCACATCGGCGCGCTTCGTGTCAATGTGTCTGACGCCGCTGGCCAGGTCTTCCCCATCAGACCATTCCTCTCGCTTATCAGTGACTATTTTCTGTG</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCAGATTTAATCCCCTAAAAACCCTTTTTAAAAAGTCATTTTGCCCGAAACAAAAAATTAAAAAAGGTCAAAATCCCACGGAAAATCACCGATAAAGAACAAATCGTATACGRAAAAAAGTCGTTTTTTTGCAGCCAACACACAGAGACGTCACATCGGCGCGCTTCGTGTCAATGTGTCTGACGCCGCTGGCCAGGTCTTCCCCATCAGACCATTCCTCTCGCTTATCAGTGACTATTTTCTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36135</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>52114</contig_pos>
        <strand>+</strand>
        <context>GTTCAACTGT[C/T]YTTTTCGTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTCTTCTTGCAACTGCTCTTTAGTCCGATTCCATTGCTTGTTCAACTGT</left_flank>
        <right_flank>CTTTTCGTCGACGTTCGTGATCTGCATCATAACCAGTGGGTGTCGAACTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGACCTTCATGATGGACTCCGAAGCGACTGGATTCATTTCTAAAGCATAACAATGATTTAGGAATTCTGAAAGTCGCAATATCTAACTCACCCATTTTGCATTTCTCCAGAACCACCTCAATATTCTTTAACTTCTTCTGTCCAATGTTAGTCGGCAACTTCATTTCTTGACCGCGCATATGAACACCGGAAGACTTGAATTCGGAGAATCGCAAAGCAGTAACAGAAATATCCAGAGGATTGAATAGTGGACCAGGAGCCATCGAAATGGATCCCGCTTTCGTTCTGAACTGTTTGTTGCGCTTTCCAGCGGCCGCTCCAGAAAATCCTGCTGTTGAAGGACTCGCCGGCTGTTCTGACATATTGATGAGCTTCTGAAGATCGTGCGCCTTCTTTTCTCTCTCCTTCTTTCTCTGATCGATTCTTCGCATCTCAGCAATCAGATCCTCTTCTTCTTGCAACTGCTCTTTAGTCCGATTCCATTGCTTGTTCAACTGTTCTTTTCGTCGACGTTCGTGATCTGCATCATAACCAGTGGGTGTCGAACTGGGATCCTGGAAGTGAAATACAGTTGAATGATTAATATTTTACCCAGTTTCTCACTCTCAGCAACTGCAATTCATACTGAATTTGATAAAACCGTTCTTTTAGATCTTCAGCTGACCGATTTACTCCAAACTTTTTGCAATCATATCTATCGGCGACTATAAACCAACGAAGATCAAATTGTCGGCAGACATCAAATAAGTAATCAGTTTCTTCTCGCGTCCATTTTGCAATTTTCAGATGATTTTCATACTCTTCATCAGTGTAAGTAGGAATTTCGATCACCTAAAACAACTGTTTCGATTTTGAAAGGGAAATTGATAATTCTCACTCTGTTGAATTTTGCGAATGCATACGGAGTTTGTGCTTCAATTTTATCTGATCGAACCCAGTGATTCAACATAAGATTGTCAGTTCTTCCTTCATTAGTGAAAGGGATCCATTTGAATTTTC</canonical>
            <polymorphic>TAGACCTTCATGATGGACTCCGAAGCGACTGGATTCATTTCTAAAGCATAACAATGATTTAGGAATTCTGAAAGTCGCAATATCTAACTCACCCATTTTGCATTTCTCCAGAACCACCTCAATATTCTTTAACTTCTTCTGTCCAATGTTAGTCGGCAACTTCATTTCTTGACCGCGCATATGAACACCGGAAGACTTGAATTCGGAGAATCGCAAAGCAGTAACAGAAATATCCAGAGGATTGAATAGTGGACCAGGAGCCATCGAAATGGATCCCGCTTTCGTTCTGAACTGTTTGTTGCGCTTTCCAGCGGCCGCTCCAGAAAATCCTGCTGTTGAAGGACTCGCCGGCTGTTCTGACATATTGATGAGCTTCTGAAGATCGTGCGCCTTCTTTTCTCTCTCCTTCTTTCTCTGATCGATTCTTCGCATCTCAGCAATCAGATCCTCTTCTTCTTGCAACTGCTCTTTAGTCCGATTCCATTGCTTGTTCAACTGTYCTTTTCGTCGACGTTCGTGATCTGCATCATAACCAGTGGGTGTCGAACTGGGATCCTGGAAGTGAAATACAGTTGAATGATTAATATTTTACCCAGTTTCTCACTCTCAGCAACTGCAATTCATACTGAATTTGATAAAACCGTTCTTTTAGATCTTCAGCTGACCGATTTACTCCAAACTTTTTGCAATCATATCTATCGGCGACTATAAACCAACGAAGATCAAATTGTCGGCAGACATCAAATAAGTAATCAGTTTCTTCTCGCGTCCATTTTGCAATTTTCAGATGATTTTCATACTCTTCATCAGTGTAAGTAGGAATTTCGATCACCTAAAACAACTGTTTCGATTTTGAAAGGGAAATTGATAATTCTCACTCTGTTGAATTTTGCGAATGCATACGGAGTTTGTGCTTCAATTTTATCTGATCGAACCCAGTGATTCAACATAAGATTGTCAGTTCTTCCTTCATTAGTGAAAGGGATCCATTTGAATTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTCTCTCCTTCTTTCTCTGAT</pcr_primer_p1>
		<pcr_primer_p2>GAACGGTTTTATCAAATTCAGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTCTCTCCTTCTTTCTCTGATCGATTCTTCGCATCTCAGCAATCAGATCCTCTTCTTCTTGCAACTGCTCTTTAGTCCGATTCCATTGCTTGTTCAACTGTTCTTTTCGTCGACGTTCGTGATCTGCATCATAACCAGTGGGTGTCGAACTGGGATCCTGGAAGTGAAATACAGTTGAATGATTAATATTTTACCCAGTTTCTCACTCTCAGCAACTGCAATTCATACTGAATTTGATAAAACCGTTC</canonical_amplicon>
		<polymorphic_amplicon>TTCTCTCTCCTTCTTTCTCTGATCGATTCTTCGCATCTCAGCAATCAGATCCTCTTCTTCTTGCAACTGCTCTTTAGTCCGATTCCATTGCTTGTTCAACTGTYCTTTTCGTCGACGTTCGTGATCTGCATCATAACCAGTGGGTGTCGAACTGGGATCCTGGAAGTGAAATACAGTTGAATGATTAATATTTTACCCAGTTTCTCACTCTCAGCAACTGCAATTCATACTGAATTTGATAAAACCGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36136</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>52115</contig_pos>
        <strand>+</strand>
        <context>TTCAACTGTY[C/T]TTTTCGTCGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTTCTTGCAACTGCTCTTTAGTCCGATTCCATTGCTTGTTCAACTGTT</left_flank>
        <right_flank>TTTTCGTCGACGTTCGTGATCTGCATCATAACCAGTGGGTGTCGAACTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACCTTCATGATGGACTCCGAAGCGACTGGATTCATTTCTAAAGCATAACAATGATTTAGGAATTCTGAAAGTCGCAATATCTAACTCACCCATTTTGCATTTCTCCAGAACCACCTCAATATTCTTTAACTTCTTCTGTCCAATGTTAGTCGGCAACTTCATTTCTTGACCGCGCATATGAACACCGGAAGACTTGAATTCGGAGAATCGCAAAGCAGTAACAGAAATATCCAGAGGATTGAATAGTGGACCAGGAGCCATCGAAATGGATCCCGCTTTCGTTCTGAACTGTTTGTTGCGCTTTCCAGCGGCCGCTCCAGAAAATCCTGCTGTTGAAGGACTCGCCGGCTGTTCTGACATATTGATGAGCTTCTGAAGATCGTGCGCCTTCTTTTCTCTCTCCTTCTTTCTCTGATCGATTCTTCGCATCTCAGCAATCAGATCCTCTTCTTCTTGCAACTGCTCTTTAGTCCGATTCCATTGCTTGTTCAACTGTTCTTTTCGTCGACGTTCGTGATCTGCATCATAACCAGTGGGTGTCGAACTGGGATCCTGGAAGTGAAATACAGTTGAATGATTAATATTTTACCCAGTTTCTCACTCTCAGCAACTGCAATTCATACTGAATTTGATAAAACCGTTCTTTTAGATCTTCAGCTGACCGATTTACTCCAAACTTTTTGCAATCATATCTATCGGCGACTATAAACCAACGAAGATCAAATTGTCGGCAGACATCAAATAAGTAATCAGTTTCTTCTCGCGTCCATTTTGCAATTTTCAGATGATTTTCATACTCTTCATCAGTGTAAGTAGGAATTTCGATCACCTAAAACAACTGTTTCGATTTTGAAAGGGAAATTGATAATTCTCACTCTGTTGAATTTTGCGAATGCATACGGAGTTTGTGCTTCAATTTTATCTGATCGAACCCAGTGATTCAACATAAGATTGTCAGTTCTTCCTTCATTAGTGAAAGGGATCCATTTGAATTTTCG</canonical>
            <polymorphic>AGACCTTCATGATGGACTCCGAAGCGACTGGATTCATTTCTAAAGCATAACAATGATTTAGGAATTCTGAAAGTCGCAATATCTAACTCACCCATTTTGCATTTCTCCAGAACCACCTCAATATTCTTTAACTTCTTCTGTCCAATGTTAGTCGGCAACTTCATTTCTTGACCGCGCATATGAACACCGGAAGACTTGAATTCGGAGAATCGCAAAGCAGTAACAGAAATATCCAGAGGATTGAATAGTGGACCAGGAGCCATCGAAATGGATCCCGCTTTCGTTCTGAACTGTTTGTTGCGCTTTCCAGCGGCCGCTCCAGAAAATCCTGCTGTTGAAGGACTCGCCGGCTGTTCTGACATATTGATGAGCTTCTGAAGATCGTGCGCCTTCTTTTCTCTCTCCTTCTTTCTCTGATCGATTCTTCGCATCTCAGCAATCAGATCCTCTTCTTCTTGCAACTGCTCTTTAGTCCGATTCCATTGCTTGTTCAACTGTTYTTTTCGTCGACGTTCGTGATCTGCATCATAACCAGTGGGTGTCGAACTGGGATCCTGGAAGTGAAATACAGTTGAATGATTAATATTTTACCCAGTTTCTCACTCTCAGCAACTGCAATTCATACTGAATTTGATAAAACCGTTCTTTTAGATCTTCAGCTGACCGATTTACTCCAAACTTTTTGCAATCATATCTATCGGCGACTATAAACCAACGAAGATCAAATTGTCGGCAGACATCAAATAAGTAATCAGTTTCTTCTCGCGTCCATTTTGCAATTTTCAGATGATTTTCATACTCTTCATCAGTGTAAGTAGGAATTTCGATCACCTAAAACAACTGTTTCGATTTTGAAAGGGAAATTGATAATTCTCACTCTGTTGAATTTTGCGAATGCATACGGAGTTTGTGCTTCAATTTTATCTGATCGAACCCAGTGATTCAACATAAGATTGTCAGTTCTTCCTTCATTAGTGAAAGGGATCCATTTGAATTTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTCTCTCCTTCTTTCTCTGAT</pcr_primer_p1>
		<pcr_primer_p2>GAACGGTTTTATCAAATTCAGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTCTCTCCTTCTTTCTCTGATCGATTCTTCGCATCTCAGCAATCAGATCCTCTTCTTCTTGCAACTGCTCTTTAGTCCGATTCCATTGCTTGTTCAACTGTTCTTTTCGTCGACGTTCGTGATCTGCATCATAACCAGTGGGTGTCGAACTGGGATCCTGGAAGTGAAATACAGTTGAATGATTAATATTTTACCCAGTTTCTCACTCTCAGCAACTGCAATTCATACTGAATTTGATAAAACCGTTC</canonical_amplicon>
		<polymorphic_amplicon>TTCTCTCTCCTTCTTTCTCTGATCGATTCTTCGCATCTCAGCAATCAGATCCTCTTCTTCTTGCAACTGCTCTTTAGTCCGATTCCATTGCTTGTTCAACTGTTYTTTTCGTCGACGTTCGTGATCTGCATCATAACCAGTGGGTGTCGAACTGGGATCCTGGAAGTGAAATACAGTTGAATGATTAATATTTTACCCAGTTTCTCACTCTCAGCAACTGCAATTCATACTGAATTTGATAAAACCGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36137</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>54883</contig_pos>
        <strand>+</strand>
        <context>GTGGAAGCGC[C/T]TTTTTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGTGAATGCGCTGAATGGTGAGTTCTTCAGCTAAACCACGTGGAAGCGC</left_flank>
        <right_flank>TTTTTTTTTGATACCCCTAGACTTCTGCGAAAGTGACCTATTTATTATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCATAAAACTTTATCATATCTCTTGTTACAATTTATGGTTTAGAACCTTTCCGCGCGAATACTTTTAACAGATAACAATTTACATATCACTTATACTCCATCTATTTAGAATCGTACATGAGCTCGAAAAATATGACGCCGCGCAGACAGATGGCTGTGAACGCTGCAATAGACAAGGATTGTCCGGTTTGCCACTGTGAGATGGTGCTTCCGACAGCAATTCCGGCGTGTGGCCACAAATTCTGCTTCCTCTGCCTTAAAGGTGTGAGCATGGCTCACTTGGGAGGGTGTCCGATTTGTCGCGGGCCAATCGATGAGAAGATTTTCAAAAAACCAAAGCAAAATCTCAATCTCAAAATGGATATGCCTGATTCACCAGCTCCATCGACAAGTAATTCAGCTGAGAAAGAAGTGAAAGAAGAGCCAGTTGACGAGGATGTCAAGCCTGATGTGAATGCGCTGAATGGTGAGTTCTTCAGCTAAACCACGTGGAAGCGCTTTTTTTTTTGATACCCCTAGACTTCTGCGAAAGTGACCTATTTATTATATTTCAGCCGCTCTTAACACCGCGTCTACTAAAATGTACTGGCTGTATCACGGACGAAATCGCGGATGGTGGCGATTCGATCCACGTGTCGAGAAAGACATTGAGGAAGCATACAACCACAGAACGCCAATCACTGAAGTCACAATTTGCGGACAGGCGTACGTCATCGACATTGCTAAAATGACACAATATCCGAAGAATAATAAGGGTGCGGCTCGAGATGTAAAGTGAGTTGCAGAAATTACGTCTTTAAATATAACACAAATTTCAGACGCGTTGACAGCAACGAATTCGACACACTCGACGTTAAGGGACTGGCTGGAGTTTTCGCTGCTTCTGGCGGTGCCGGATCATCATCCACCTAATGAACTCAGTTTTCCTGATACTCGAATCAATTAACCCGTAGACATTCCCTACTTCCCTTTCGTCTCAATATCATTACGGCATTCATT</canonical>
            <polymorphic>ATCATAAAACTTTATCATATCTCTTGTTACAATTTATGGTTTAGAACCTTTCCGCGCGAATACTTTTAACAGATAACAATTTACATATCACTTATACTCCATCTATTTAGAATCGTACATGAGCTCGAAAAATATGACGCCGCGCAGACAGATGGCTGTGAACGCTGCAATAGACAAGGATTGTCCGGTTTGCCACTGTGAGATGGTGCTTCCGACAGCAATTCCGGCGTGTGGCCACAAATTCTGCTTCCTCTGCCTTAAAGGTGTGAGCATGGCTCACTTGGGAGGGTGTCCGATTTGTCGCGGGCCAATCGATGAGAAGATTTTCAAAAAACCAAAGCAAAATCTCAATCTCAAAATGGATATGCCTGATTCACCAGCTCCATCGACAAGTAATTCAGCTGAGAAAGAAGTGAAAGAAGAGCCAGTTGACGAGGATGTCAAGCCTGATGTGAATGCGCTGAATGGTGAGTTCTTCAGCTAAACCACGTGGAAGCGCYTTTTTTTTTGATACCCCTAGACTTCTGCGAAAGTGACCTATTTATTATATTTCAGCCGCTCTTAACACCGCGTCTACTAAAATGTACTGGCTGTATCACGGACGAAATCGCGGATGGTGGCGATTCGATCCACGTGTCGAGAAAGACATTGAGGAAGCATACAACCACAGAACGCCAATCACTGAAGTCACAATTTGCGGACAGGCGTACGTCATCGACATTGCTAAAATGACACAATATCCGAAGAATAATAAGGGTGCGGCTCGAGATGTAAAGTGAGTTGCAGAAATTACGTCTTTAAATATAACACAAATTTCAGACGCGTTGACAGCAACGAATTCGACACACTCGACGTTAAGGGACTGGCTGGAGTTTTCGCTGCTTCTGGCGGTGCCGGATCATCATCCACCTAATGAACTCAGTTTTCCTGATACTCGAATCAATTAACCCGTAGACATTCCCTACTTCCCTTTCGTCTCAATATCATTACGGCATTCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCGCT</site>
                <isoschizomers>
                    <enzyme>AfeI</enzyme>
                    <enzyme>Aor51HI</enzyme>
                    <enzyme>Eco47III</enzyme>
                    <enzyme>FunI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACCAAAGCAAAATCTCAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTAGTAGACGCGGTGTTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACCAAAGCAAAATCTCAATCTCAAAATGGATATGCCTGATTCACCAGCTCCATCGACAAGTAATTCAGCTGAGAAAGAAGTGAAAGAAGAGCCAGTTGACGAGGATGTCAAGCCTGATGTGAATGCGCTGAATGGTGAGTTCTTCAGCTAAACCACGTGGAAGCGCTTTTTTTTTTGATACCCCTAGACTTCTGCGAAAGTGACCTATTTATTATATTTCAGCCGCTCTTAACACCGCGTCTACTAAA</canonical_amplicon>
		<polymorphic_amplicon>AAACCAAAGCAAAATCTCAATCTCAAAATGGATATGCCTGATTCACCAGCTCCATCGACAAGTAATTCAGCTGAGAAAGAAGTGAAAGAAGAGCCAGTTGACGAGGATGTCAAGCCTGATGTGAATGCGCTGAATGGTGAGTTCTTCAGCTAAACCACGTGGAAGCGCYTTTTTTTTTGATACCCCTAGACTTCTGCGAAAGTGACCTATTTATTATATTTCAGCCGCTCTTAACACCGCGTCTACTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36138</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>72076</contig_pos>
        <strand></strand>
        <context>ccatttctgg[C/A]cacttctgga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GAATCGTCGGCGCTGTTTTGTACCCAGGCTCAGTTCCTGACCATTTCTGG</left_flank>
        <right_flank>CACTTCTGGAAGATTCTGGAATAGTTTTTGAATTTCCTCTGATACTGAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGTTAGCTGTGTTATCAGCCAAATAGAATGAACTTTGAAAATCTGGCGGTTTTTTGCAGAAACTGTGAGTTGGGTTCCCTGCTAGTGACGTGGTGTTTCTTTTGACCTCCAAAAGTTTCTTTGGACAACCTCGAAGCGCACTTTCCCGTTCAAAAGGGAGCAAGTGAGCGCATGGAAAACGAGGGACAAGCGCTTTTTTGTTTACAAGAAGAAGAGAAGGGGAGGAGAAAAATTGATTTTTTTTCTTTTTTTTTTTTGCTTTCTGCATTGAAATTTTTTTTTGAAATTATTGTAGGAGAAGACTACAAAAATCAGGGATGCAGATACATTTTTTTGAACCTTGTGTGATTCAACGAAAAACAGGAACTATAGAAATTGGAGTAGGCGACAAAAGATATAGGAGACAAGAGGAACAAAACAGGAGTTGAATTCTCCTAAGGGGGATCAGAATCGTCGGCGCTGTTTTGTACCCAGGCTCAGTTCCTGACCATTTCTGGCCACTTCTGGAAGATTCTGGAATAGTTTTTGAATTTCCTCTGATACTGAAAGCTACGAAAAATTAGCGGTTTTTTGGCGATTTTCCAAAAAACCAAATATACTTTTTTCTTCGATTTTTCGCAAAATTTTTAGACCTTTTTAGGTTCTTCATCTATTTTTGGAGATTCTTTTTCGATTTCTCCGATTTTTTTTGTCTGAAATTCGATGGAACGGTGTTCGGGAAGATTATTGTGGGTTACCGTAAAGTTTTCGATTTTGTAGTTTTTTTTCGCGAAACTTTGTCTGCATTTTGACGTGATTTTGTTCGCAAAAAACTACAAACTACAAAACTGAAGGTTTTCTACAGTAATCTACAGTAATCTTCACGAACACCGTTCCATCAAATTTCAGACAAGAAAACGGGAAAATCGGAGAAGAACCTTTGAAAATAGCTGAAAAACTTGTAAAGGTCTAAACATTTTGCAAAGTATCAAGGTTTAAAAATTCGAAAAAACAAATGA</canonical>
            <polymorphic>ATAGTTAGCTGTGTTATCAGCCAAATAGAATGAACTTTGAAAATCTGGCGGTTTTTTGCAGAAACTGTGAGTTGGGTTCCCTGCTAGTGACGTGGTGTTTCTTTTGACCTCCAAAAGTTTCTTTGGACAACCTCGAAGCGCACTTTCCCGTTCAAAAGGGAGCAAGTGAGCGCATGGAAAACGAGGGACAAGCGCTTTTTTGTTTACAAGAAGAAGAGAAGGGGAGGAGAAAAATTGATTTTTTTTCTTTTTTTTTTTTGCTTTCTGCATTGAAATTTTTTTTTGAAATTATTGTAGGAGAAGACTACAAAAATCAGGGATGCAGATACATTTTTTTGAACCTTGTGTGATTCAACGAAAAACAGGAACTATAGAAATTGGAGTAGGCGACAAAAGATATAGGAGACAAGAGGAACAAAACAGGAGTTGAATTCTCCTAAGGGGGATCAGAATCGTCGGCGCTGTTTTGTACCCAGGCTCAGTTCCTGACCATTTCTGGMCACTTCTGGAAGATTCTGGAATAGTTTTTGAATTTCCTCTGATACTGAAAGCTACGAAAAATTAGCGGTTTTTTGGCGATTTTCCAAAAAACCAAATATACTTTTTTCTTCGATTTTTCGCAAAATTTTTAGACCTTTTTAGGTTCTTCATCTATTTTTGGAGATTCTTTTTCGATTTCTCCGATTTTTTTTGTCTGAAATTCGATGGAACGGTGTTCGGGAAGATTATTGTGGGTTACCGTAAAGTTTTCGATTTTGTAGTTTTTTTTCGCGAAACTTTGTCTGCATTTTGACGTGATTTTGTTCGCAAAAAACTACAAACTACAAAACTGAAGGTTTTCTACAGTAATCTACAGTAATCTTCACGAACACCGTTCCATCAAATTTCAGACAAGAAAACGGGAAAATCGGAGAAGAACCTTTGAAAATAGCTGAAAAACTTGTAAAGGTCTAAACATTTTGCAAAGTATCAAGGTTTAAAAATTCGAAAAAACAAATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGGCCA</site>
                <isoschizomers>
                    <enzyme>BalI</enzyme>
                    <enzyme>MlsI</enzyme>
                    <enzyme>MluNI</enzyme>
                    <enzyme>MscI</enzyme>
                    <enzyme>Msp20I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>457 380 69 52 22 12 8</canonical_bands>
                <polymorphic_bands>457 380 74 69 12 8</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAGGAGTTGAATTCTCCTAAG</pcr_primer_p1>
		<pcr_primer_p2>CGTCATATCACCTTTTCTAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>677</pcr_amplicon_size>
		<canonical_amplicon>AACAGGAGTTGAATTCTCCTAAGGGGGATCAGAATCGTCGGCGCTGTTTTGTACCCAGGCTCAGTTCCTGACCATTTCTGGCCACTTCTGGAAGATTCTGGAAT</canonical_amplicon>
		<polymorphic_amplicon>AACAGGAGTTGAATTCTCCTAAGGGGGATCAGAATCGTCGGCGCTGTTTTGTACCCAGGCTCAGTTCCTGACCATTTCTGGMCACTTCTGGAAGATTCTGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36139</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>84420</contig_pos>
        <strand>+</strand>
        <context>TGTGATGTKA[G/T]AGGAAATTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAGATTGAAGATTAGAAGGTGGTTGAGGAATGGCTAGTCTGTGATGTTA</left_flank>
        <right_flank>AGGAAATTTCAGAAATACTGAAAGCTTCAATTTTGACCAAAACCATAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGAGGAGGATCTGTTTAGAGAGAAGAAGAAGGAGCATAAGAAGAAGAAGAAAGAGAAGAAGTTGAAAGTGGAAATAGCATCCTTTGAGGAAAAAAACACTGAAAAGGAGAATAGATGAACGCTAGCAAATGAAAAGAAAAAAGAAAAGAGGGTGAAGAATAAGAAAAATGTTTGGGGTATGTTGTGTGCCCAAAAAGCAAAAAAACGAGGGGAAGAGGTCCTCCGGAAGAAATAGATTATTATGGGAAGAGAGGAAGAGAGGCAAGAGGGCAATGATGATGATGTTGGAGAAGGAAGAACATATATATGTGGGAGAATATGGAAAACGGGAGGAGGAAGAAAGAAGAAAGAAGATGATGGAGATGGCATGAATCCCATTATGACTTCTGGAGCAGAAGTCGGTTCGCTGGGTAAGACCGAGGGTTTTAGCGAAATAAGAATTGGGAAATGAGATTGAAGATTAGAAGGTGGTTGAGGAATGGCTAGTCTGTGATGTTAAAGGAAATTTCAGAAATACTGAAAGCTTCAATTTTGACCAAAACCATAAAAGGTTAGAATCGAAAGAAGTTTCAAATTCAATAGTAAACTCAAGGCTTTACAATAACAGGAAGACGATAGAAAGAAAAGGTCCTCTAACAGTTTAGATTGAATTGTTGGAATGCTTTGTTTTGAGAGACTAGACTTTCCAAAACTAGTATCAAAAGGGACCAAATTTAAAACAAAATTTGAAAAACTGATTTTTAAAATTGAATTAGGGGTGGTGGGACATAAAACTAAATCTTTGAAAGTTATTATCCATATTTAGGCTACTCAGTTGTTCTAAAAACTAACATTTTGTAACATACAAACATACACACGGGGCAATTTCCTTTGCACATGTGTTAAGGGCTCAAACGTAACAGATGCTACTTTGTGCAGGAATCTCAGAAAAAATTGACCCTTCGGTGTAGGAGAAGTTTTCCCCATTTCTCAAGTTGCTAGACTCAATGTCCAAATACT</canonical>
            <polymorphic>CGGAGGAGGATCTGTTTAGAGAGAAGAAGAAGGAGCATAAGAAGAAGAAGAAAGAGAAGAAGTTGAAAGTGGAAATAGCATCCTTTGAGGAAAAAAACACTGAAAAGGAGAATAGATGAACGCTAGCAAATGAAAAGAAAAAAGAAAAGAGGGTGAAGAATAAGAAAAATGTTTGGGGTATGTTGTGTGCCCAAAAAGCAAAAAAACGAGGGGAAGAGGTCCTCCGGAAGAAATAGATTATTATGGGAAGAGAGGAAGAGAGGCAAGAGGGCAATGATGATGATGTTGGAGAAGGAAGAACATATATATGTGGGAGAATATGGAAAACGGGAGGAGGAAGAAAGAAGAAAGAAGATGATGGAGATGGCATGAATCCCATTATGACTTCTGGAGCAGAAGTCGGTTCGCTGGGTAAGACCGAGGGTTTTAGCGAAATAAGAATTGGGAAATGAGATTGAAGATTAGAAGGTGGTTGAGGAATGGCTAGTCTGTGATGTTAKAGGAAATTTCAGAAATACTGAAAGCTTCAATTTTGACCAAAACCATAAAAGGTTAGAATCGAAAGAAGTTTCAAATTCAATAGTAAACTCAAGGCTTTACAATAACAGGAAGACGATAGAAAGAAAAGGTCCTCTAACAGTTTAGATTGAATTGTTGGAATGCTTTGTTTTGAGAGACTAGACTTTCCAAAACTAGTATCAAAAGGGACCAAATTTAAAACAAAATTTGAAAAACTGATTTTTAAAATTGAATTAGGGGTGGTGGGACATAAAACTAAATCTTTGAAAGTTATTATCCATATTTAGGCTACTCAGTTGTTCTAAAAACTAACATTTTGTAACATACAAACATACACACGGGGCAATTTCCTTTGCACATGTGTTAAGGGCTCAAACGTAACAGATGCTACTTTGTGCAGGAATCTCAGAAAAAATTGACCCTTCGGTGTAGGAGAAGTTTTCCCCATTTCTCAAGTTGCTAGACTCAATGTCCAAATACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>497 218 141 117 27</canonical_bands>
                <polymorphic_bands>715 141 117 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATAAGAATTGGGAAATGAGAT</pcr_primer_p1>
		<pcr_primer_p2>TAGTCTCTCAAAACAAAGCATTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAATAAGAATTGGGAAATGAGATTGAAGATTAGAAGGTGGTTGAGGAATGGCTAGTCTGTGATGTTAAAGGAAATTTCAGAAATACTGAAAGCTTCAATTTTGACCAAAACCATAAAAGGTTAGAATCGAAAGAAGTTTCAAATTCAATAGTAAACTCAAGGCTTTACAATAACAGGAAGACGATAGAAAGAAAAGGTCCTCTAACAGTTTAGATTGAATTGTTGGAATGCTTTGTTTTGAGAGACTA</canonical_amplicon>
		<polymorphic_amplicon>AAATAAGAATTGGGAAATGAGATTGAAGATTAGAAGGTGGTTGAGGAATGGCTAGTCTGTGATGTTAKAGGAAATTTCAGAAATACTGAAAGCTTCAATTTTGACCAAAACCATAAAAGGTTAGAATCGAAAGAAGTTTCAAATTCAATAGTAAACTCAAGGCTTTACAATAACAGGAAGACGATAGAAAGAAAAGGTCCTCTAACAGTTTAGATTGAATTGTTGGAATGCTTTGTTTTGAGAGACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36140</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>104683</contig_pos>
        <strand>+</strand>
        <context>TTCCATCGTC[C/T]TTCCCATACC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCAGCTTTCAGCTTTTTCACAGCAACTGGCAGATTTGAATTCCATCGTC</left_flank>
        <right_flank>TTCCCATACCTGAAAATTTTTTTATTTCTGTTTCGGCTAAAATTTTTTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCCGAAACTCCAAACATCCGATTTTGTAGTAAATCGGTTATAATTCGCAGCTTCTGGAGCAGTCCATTTAATTGGAAATCTTGCACCGGTCCTTGCTTCGTATTCATTCTCTTTCATTAGAATTCTTGCTAATCCAAAGTCTGCAATTTTCACTGACATCCCGGCGCTGATGAGAATGTTTCTGGCTGCCAAGTCTCGATGAATGAAATTCATCTCCTCGAGATATGCCATTCCAGCAGCCACTTGAGCTGATATTTCAACCAGTTGTGGCATCTGATACTGCCTCCCTCTTCGTTGTAAAAATGTGAGTAAATTCTCTTGCATCAACTCGGTCACTATAAGAATCGGCTCATCTTTTGTGCAAACAGCGTACAGTGACAAAAGTTTTGGGTGTCTCAGTTTTTTCATAATCTGCGCTTCAGCAAGAAAATCGGTTGGGTCCGCTGTTCCAGCTTTCAGCTTTTTCACAGCAACTGGCAGATTTGAATTCCATCGTCCTTCCCATACCTGAAAATTTTTTTATTTCTGTTTCGGCTAAAATTTTTTAGGAGACCGTCAAAAACTGCATTTATTCGTTTTCAGATGGCATTACCCATTGATCGTTTGTATGAGTTTATATAATTATCTTGTACATTAGAATAACAAGGCCCTCGTTTTTTATACTTTTAAAGATCATTTTTAAAAGGATCCTATCTACATTCCTTATAAACTTTAACGGTTCACAAGCTTCTTAATCTTGTTCTGTCGTTTTTTTCTGTTTCCGGCCTCAATCAATCTTCTCATGTTTCAATTCCAAAAAACCCTCGAATCTATCGCTCCGATCTGTTTCGTTGAGATAGAAAGATAAACCTCGTGTTTTTTCTCAAGAAAGAGCACCTTACGAAAAATGAAAAAGCACAAACATAGAGACCCAAGCGCCGATGAGAACAGATCATGGCAGAAACGGCGGATGTGTATTATCCGGTTGTTGTTTTTGAAAAGAGAGAAAAGGAGGACTG</canonical>
            <polymorphic>ATTCCGAAACTCCAAACATCCGATTTTGTAGTAAATCGGTTATAATTCGCAGCTTCTGGAGCAGTCCATTTAATTGGAAATCTTGCACCGGTCCTTGCTTCGTATTCATTCTCTTTCATTAGAATTCTTGCTAATCCAAAGTCTGCAATTTTCACTGACATCCCGGCGCTGATGAGAATGTTTCTGGCTGCCAAGTCTCGATGAATGAAATTCATCTCCTCGAGATATGCCATTCCAGCAGCCACTTGAGCTGATATTTCAACCAGTTGTGGCATCTGATACTGCCTCCCTCTTCGTTGTAAAAATGTGAGTAAATTCTCTTGCATCAACTCGGTCACTATAAGAATCGGCTCATCTTTTGTGCAAACAGCGTACAGTGACAAAAGTTTTGGGTGTCTCAGTTTTTTCATAATCTGCGCTTCAGCAAGAAAATCGGTTGGGTCCGCTGTTCCAGCTTTCAGCTTTTTCACAGCAACTGGCAGATTTGAATTCCATCGTCYTTCCCATACCTGAAAATTTTTTTATTTCTGTTTCGGCTAAAATTTTTTAGGAGACCGTCAAAAACTGCATTTATTCGTTTTCAGATGGCATTACCCATTGATCGTTTGTATGAGTTTATATAATTATCTTGTACATTAGAATAACAAGGCCCTCGTTTTTTATACTTTTAAAGATCATTTTTAAAAGGATCCTATCTACATTCCTTATAAACTTTAACGGTTCACAAGCTTCTTAATCTTGTTCTGTCGTTTTTTTCTGTTTCCGGCCTCAATCAATCTTCTCATGTTTCAATTCCAAAAAACCCTCGAATCTATCGCTCCGATCTGTTTCGTTGAGATAGAAAGATAAACCTCGTGTTTTTTCTCAAGAAAGAGCACCTTACGAAAAATGAAAAAGCACAAACATAGAGACCCAAGCGCCGATGAGAACAGATCATGGCAGAAACGGCGGATGTGTATTATCCGGTTGTTGTTTTTGAAAAGAGAGAAAAGGAGGACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAACTCGGTCACTATAAGAATC</pcr_primer_p1>
		<pcr_primer_p2>ACGAATAAATGCAGTTTTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TCAACTCGGTCACTATAAGAATCGGCTCATCTTTTGTGCAAACAGCGTACAGTGACAAAAGTTTTGGGTGTCTCAGTTTTTTCATAATCTGCGCTTCAGCAAGAAAATCGGTTGGGTCCGCTGTTCCAGCTTTCAGCTTTTTCACAGCAACTGGCAGATTTGAATTCCATCGTCCTTCCCATACCTGAAAATTTTTTTATTTCTGTTTCGGCTAAAATTTTTTAGGAGACCGTCAAAAACTGCATTTATTCGT</canonical_amplicon>
		<polymorphic_amplicon>TCAACTCGGTCACTATAAGAATCGGCTCATCTTTTGTGCAAACAGCGTACAGTGACAAAAGTTTTGGGTGTCTCAGTTTTTTCATAATCTGCGCTTCAGCAAGAAAATCGGTTGGGTCCGCTGTTCCAGCTTTCAGCTTTTTCACAGCAACTGGCAGATTTGAATTCCATCGTCYTTCCCATACCTGAAAATTTTTTTATTTCTGTTTCGGCTAAAATTTTTTAGGAGACCGTCAAAAACTGCATTTATTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36141</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>131820</contig_pos>
        <strand>+</strand>
        <context>TCGTCGCGAA[A/G]GTCTATCTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTCAGAATGGAAATTGCAGTTTTATTCCCTTCCTGTGTCGTCGCGAA</left_flank>
        <right_flank>GTCTATCTGCAGTTGCCGCTTAGAGACAAGAGAAAAAAGAGAGACGCAGA</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCCACTTCTTAATATGGAAACTTTTCTGTCTGTCTCGGACATTCACTTGAATGGCGGTACTCGATAAAAAAACTGAGTAGAATAAAACTGTAACATAGTAAAACTGGGCATAATAAAACCATACTTAACAGGCCTGGCCGGGCGGAGATGGTGTCTTGAGCCTCCTATCTAATAGGGAACCTATAGGGCTGAGAATCGAAATTTTAAATTCATACAAACTCCAGTTTCCCCAAAGTTTCAGCCTGATTGGTTCAGTCTCAGTTTTTTTCGCGGATTTTTTTGTCATTTTTTGTAGTTTTTACAGGTTGCCTGAATAACCCCATCGAATATCTTTTTCTGAGAACTTTCGTGAAGATACAATACTGTATTGTCGAGGCGAGGACCGATGTCTAACCAACACAAGCATGTTTAAGAATTGGTTTTCTTCGATTATAACTGCTTAATTGTTTTTCAGAATGGAAATTGCAGTTTTATTCCCTTCCTGTGTCGTCGCGAAAGTCTATCTGCAGTTGCCGCTTAGAGACAAGAGAAAAAAGAGAGACGCAGACGACAAGGCAACCAGTAGCCGATATCCATCGTCGTGCACTCATTTATCGAATTTCATCCGTTTTCTTCTATTTTTTCTCCGAAAACGTCTTCCAATTGATGCCACGTCATAGATATTCTGAATAAAAATAAATTAACGAAAATGGCGACTTCCGCTATGTTTATTCTGGATTTAAAGGGAAAAGTTAGAAATTGTTCGAAATTGGCTTCTAATTTTTATTTTTCTCAGACGATAATATCCCGAAATTATCGTGGCGATGTGGACATGACAACGGTCGATAAATTCATCACTTTGTTGATGGAGAAGGAAGAAGAAGGGTTGGCAGCACCGGTGCTCACTTATCAGGACACCAATTTTGTGTTCATCAAGCACACAAACATTTATTGTTAGTTTTGAGTACAAGTCGATTTCCGACATTCTTTCACACTGGATTATTGTTTTTATTGTCTA</canonical>
            <polymorphic>AAATCCACTTCTTAATATGGAAACTTTTCTGTCTGTCTCGGACATTCACTTGAATGGCGGTACTCGATAAAAAAACTGAGTAGAATAAAACTGTAACATAGTAAAACTGGGCATAATAAAACCATACTTAACAGGCCTGGCCGGGCGGAGATGGTGTCTTGAGCCTCCTATCTAATAGGGAACCTATAGGGCTGAGAATCGAAATTTTAAATTCATACAAACTCCAGTTTCCCCAAAGTTTCAGCCTGATTGGTTCAGTCTCAGTTTTTTTCGCGGATTTTTTTGTCATTTTTTGTAGTTTTTACAGGTTGCCTGAATAACCCCATCGAATATCTTTTTCTGAGAACTTTCGTGAAGATACAATACTGTATTGTCGAGGCGAGGACCGATGTCTAACCAACACAAGCATGTTTAAGAATTGGTTTTCTTCGATTATAACTGCTTAATTGTTTTTCAGAATGGAAATTGCAGTTTTATTCCCTTCCTGTGTCGTCGCGAARGTCTATCTGCAGTTGCCGCTTAGAGACAAGAGAAAAAAGAGAGACGCAGACGACAAGGCAACCAGTAGCCGATATCCATCGTCGTGCACTCATTTATCGAATTTCATCCGTTTTCTTCTATTTTTTCTCCGAAAACGTCTTCCAATTGATGCCACGTCATAGATATTCTGAATAAAAATAAATTAACGAAAATGGCGACTTCCGCTATGTTTATTCTGGATTTAAAGGGAAAAGTTAGAAATTGTTCGAAATTGGCTTCTAATTTTTATTTTTCTCAGACGATAATATCCCGAAATTATCGTGGCGATGTGGACATGACAACGGTCGATAAATTCATCACTTTGTTGATGGAGAAGGAAGAAGAAGGGTTGGCAGCACCGGTGCTCACTTATCAGGACACCAATTTTGTGTTCATCAAGCACACAAACATTTATTGTTAGTTTTGAGTACAAGTCGATTTCCGACATTCTTTCACACTGGATTATTGTTTTTATTGTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATTGTTTTTCAGAATGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>GCCATTTTCGTTAATTTATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TAATTGTTTTTCAGAATGGAAATTGCAGTTTTATTCCCTTCCTGTGTCGTCGCGAAAGTCTATCTGCAGTTGCCGCTTAGAGACAAGAGAAAAAAGAGAGACGCAGACGACAAGGCAACCAGTAGCCGATATCCATCGTCGTGCACTCATTTATCGAATTTCATCCGTTTTCTTCTATTTTTTCTCCGAAAACGTCTTCCAATTGATGCCACGTCATAGATATTCTGAATAAAAATAAATTAACGAAAATGGC</canonical_amplicon>
		<polymorphic_amplicon>TAATTGTTTTTCAGAATGGAAATTGCAGTTTTATTCCCTTCCTGTGTCGTCGCGAARGTCTATCTGCAGTTGCCGCTTAGAGACAAGAGAAAAAAGAGAGACGCAGACGACAAGGCAACCAGTAGCCGATATCCATCGTCGTGCACTCATTTATCGAATTTCATCCGTTTTCTTCTATTTTTTCTCCGAAAACGTCTTCCAATTGATGCCACGTCATAGATATTCTGAATAAAAATAAATTAACGAAAATGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36142</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>137000</contig_pos>
        <strand>+</strand>
        <context>AGATGAAAGG[A/G]ACATAGAGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATACTTCCTGTCCTTTCTCGGAAAGAAAGCGAAAAAGAGAGATGAAAGG</left_flank>
        <right_flank>ACATAGAGCAAAAAATGGGGAGCCGCCCTGGCGCCAGAGAGGAGGGTACT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTCACATGGTTTGAGGAGCTGATGGTCCATCAACACCAGCAACAATACTTTGTGAGTTTCGGAACTTCCTTTTCTGAACTCCTATTCCATATTCACTATTCAGAATTTCCAAAAAAAAACTCCCAAAAAGAAAATTCTTCCTGCTCGTTCTCATTTTTTTCTCTTTTTTCTTTTCTCCCGTTTTTTCTCAATAAGAAACATTGTGTGTGTGAAAAAGTAGACTCCGCTTTTTCTCATTTTTCCCTGTCGTTCTACTCCTTTCTTTTTTTGCAAAAAATGAGAGTAAGAAGGCCTACGGGACGACTCCCTGTGAATAGGACCGTCCACATTTTATTGTGGAGACCTTAGCATCCCGTTCCAATCCCGTTTACATTAGTAATGGCTCGTCTAAAGTCGAAACCGTAATACGCCTACATCAAACTCTTCTGATGACTTTTTCGAATCCAAATACTTCCTGTCCTTTCTCGGAAAGAAAGCGAAAAAGAGAGATGAAAGGAACATAGAGCAAAAAATGGGGAGCCGCCCTGGCGCCAGAGAGGAGGGTACTGCGAAGCAGTTGCAAAAGGGAGTCGCGGCCACTCCGGGCGGCACGACGGAGAGGATGATGGTCTTCTTCATACATGCACACATATTCCGTTTTTCGTTTTCTGAAGGCGCCAGGCGCCTTGTTCCGTGTGGCGGCCGCAAGCATTTTTTGCACTCCCTGGGAGTGGAGGACCCCCGAGAGATTCTTTTTCGTTTTTCTCTGTTTCTAGACTCCCCTTATTGAAGAGCCTTCACGACGTCTTAATGGGCGGGACTATTGATGACGTGAGTCTTTGCGAGACTACCGTAGCCCATCTGGTGTCCAACTCGACGCTTTTATAACGTATTCTGGTGCAGTTGGAGGCCTCCCGTCCAAGTGTTTTATTAAACGGATATTGCTTCTACATACGGCAATTGACATGACCTATTGAGACTCTTCAGACAATTATTGATCCTCCATCTGTAATTTAAA</canonical>
            <polymorphic>GAATTCACATGGTTTGAGGAGCTGATGGTCCATCAACACCAGCAACAATACTTTGTGAGTTTCGGAACTTCCTTTTCTGAACTCCTATTCCATATTCACTATTCAGAATTTCCAAAAAAAAACTCCCAAAAAGAAAATTCTTCCTGCTCGTTCTCATTTTTTTCTCTTTTTTCTTTTCTCCCGTTTTTTCTCAATAAGAAACATTGTGTGTGTGAAAAAGTAGACTCCGCTTTTTCTCATTTTTCCCTGTCGTTCTACTCCTTTCTTTTTTTGCAAAAAATGAGAGTAAGAAGGCCTACGGGACGACTCCCTGTGAATAGGACCGTCCACATTTTATTGTGGAGACCTTAGCATCCCGTTCCAATCCCGTTTACATTAGTAATGGCTCGTCTAAAGTCGAAACCGTAATACGCCTACATCAAACTCTTCTGATGACTTTTTCGAATCCAAATACTTCCTGTCCTTTCTCGGAAAGAAAGCGAAAAAGAGAGATGAAAGGRACATAGAGCAAAAAATGGGGAGCCGCCCTGGCGCCAGAGAGGAGGGTACTGCGAAGCAGTTGCAAAAGGGAGTCGCGGCCACTCCGGGCGGCACGACGGAGAGGATGATGGTCTTCTTCATACATGCACACATATTCCGTTTTTCGTTTTCTGAAGGCGCCAGGCGCCTTGTTCCGTGTGGCGGCCGCAAGCATTTTTTGCACTCCCTGGGAGTGGAGGACCCCCGAGAGATTCTTTTTCGTTTTTCTCTGTTTCTAGACTCCCCTTATTGAAGAGCCTTCACGACGTCTTAATGGGCGGGACTATTGATGACGTGAGTCTTTGCGAGACTACCGTAGCCCATCTGGTGTCCAACTCGACGCTTTTATAACGTATTCTGGTGCAGTTGGAGGCCTCCCGTCCAAGTGTTTTATTAAACGGATATTGCTTCTACATACGGCAATTGACATGACCTATTGAGACTCTTCAGACAATTATTGATCCTCCATCTGTAATTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATACGCCTACATCAAACTCTT</pcr_primer_p1>
		<pcr_primer_p2>AAAACGAAAAACGGAATATGT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TAATACGCCTACATCAAACTCTTCTGATGACTTTTTCGAATCCAAATACTTCCTGTCCTTTCTCGGAAAGAAAGCGAAAAAGAGAGATGAAAGGAACATAGAGCAAAAAATGGGGAGCCGCCCTGGCGCCAGAGAGGAGGGTACTGCGAAGCAGTTGCAAAAGGGAGTCGCGGCCACTCCGGGCGGCACGACGGAGAGGATGATGGTCTTCTTCATACATGCACACATATTCCGTTTTTCGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TAATACGCCTACATCAAACTCTTCTGATGACTTTTTCGAATCCAAATACTTCCTGTCCTTTCTCGGAAAGAAAGCGAAAAAGAGAGATGAAAGGRACATAGAGCAAAAAATGGGGAGCCGCCCTGGCGCCAGAGAGGAGGGTACTGCGAAGCAGTTGCAAAAGGGAGTCGCGGCCACTCCGGGCGGCACGACGGAGAGGATGATGGTCTTCTTCATACATGCACACATATTCCGTTTTTCGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36143</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>137113</contig_pos>
        <strand>+</strand>
        <context>GGATGATGGT[C/T]TTCTTCATAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAAAGGGAGTCGCGGCCACTCCGGGCGGCACGACGGAGAGGATGATGGT</left_flank>
        <right_flank>TTCTTCATACATGCACACATATTCCGTTTTTCGTTTTCTGAAGGCGCCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAAAACTCCCAAAAAGAAAATTCTTCCTGCTCGTTCTCATTTTTTTCTCTTTTTTCTTTTCTCCCGTTTTTTCTCAATAAGAAACATTGTGTGTGTGAAAAAGTAGACTCCGCTTTTTCTCATTTTTCCCTGTCGTTCTACTCCTTTCTTTTTTTGCAAAAAATGAGAGTAAGAAGGCCTACGGGACGACTCCCTGTGAATAGGACCGTCCACATTTTATTGTGGAGACCTTAGCATCCCGTTCCAATCCCGTTTACATTAGTAATGGCTCGTCTAAAGTCGAAACCGTAATACGCCTACATCAAACTCTTCTGATGACTTTTTCGAATCCAAATACTTCCTGTCCTTTCTCGGAAAGAAAGCGAAAAAGAGAGATGAAAGGAACATAGAGCAAAAAATGGGGAGCCGCCCTGGCGCCAGAGAGGAGGGTACTGCGAAGCAGTTGCAAAAGGGAGTCGCGGCCACTCCGGGCGGCACGACGGAGAGGATGATGGTCTTCTTCATACATGCACACATATTCCGTTTTTCGTTTTCTGAAGGCGCCAGGCGCCTTGTTCCGTGTGGCGGCCGCAAGCATTTTTTGCACTCCCTGGGAGTGGAGGACCCCCGAGAGATTCTTTTTCGTTTTTCTCTGTTTCTAGACTCCCCTTATTGAAGAGCCTTCACGACGTCTTAATGGGCGGGACTATTGATGACGTGAGTCTTTGCGAGACTACCGTAGCCCATCTGGTGTCCAACTCGACGCTTTTATAACGTATTCTGGTGCAGTTGGAGGCCTCCCGTCCAAGTGTTTTATTAAACGGATATTGCTTCTACATACGGCAATTGACATGACCTATTGAGACTCTTCAGACAATTATTGATCCTCCATCTGTAATTTAAAAAAAGTTTTAATCTTTTTTCTTTCCAGTCAGATATGTGACAATTTAGACACTGTTTCTACTTTCAACCTCACATCAGGTAGCCAGGTGCTTTTGATTAAGATTCAAAAAGTAT</canonical>
            <polymorphic>AAAAAAAAACTCCCAAAAAGAAAATTCTTCCTGCTCGTTCTCATTTTTTTCTCTTTTTTCTTTTCTCCCGTTTTTTCTCAATAAGAAACATTGTGTGTGTGAAAAAGTAGACTCCGCTTTTTCTCATTTTTCCCTGTCGTTCTACTCCTTTCTTTTTTTGCAAAAAATGAGAGTAAGAAGGCCTACGGGACGACTCCCTGTGAATAGGACCGTCCACATTTTATTGTGGAGACCTTAGCATCCCGTTCCAATCCCGTTTACATTAGTAATGGCTCGTCTAAAGTCGAAACCGTAATACGCCTACATCAAACTCTTCTGATGACTTTTTCGAATCCAAATACTTCCTGTCCTTTCTCGGAAAGAAAGCGAAAAAGAGAGATGAAAGGAACATAGAGCAAAAAATGGGGAGCCGCCCTGGCGCCAGAGAGGAGGGTACTGCGAAGCAGTTGCAAAAGGGAGTCGCGGCCACTCCGGGCGGCACGACGGAGAGGATGATGGTYTTCTTCATACATGCACACATATTCCGTTTTTCGTTTTCTGAAGGCGCCAGGCGCCTTGTTCCGTGTGGCGGCCGCAAGCATTTTTTGCACTCCCTGGGAGTGGAGGACCCCCGAGAGATTCTTTTTCGTTTTTCTCTGTTTCTAGACTCCCCTTATTGAAGAGCCTTCACGACGTCTTAATGGGCGGGACTATTGATGACGTGAGTCTTTGCGAGACTACCGTAGCCCATCTGGTGTCCAACTCGACGCTTTTATAACGTATTCTGGTGCAGTTGGAGGCCTCCCGTCCAAGTGTTTTATTAAACGGATATTGCTTCTACATACGGCAATTGACATGACCTATTGAGACTCTTCAGACAATTATTGATCCTCCATCTGTAATTTAAAAAAAGTTTTAATCTTTTTTCTTTCCAGTCAGATATGTGACAATTTAGACACTGTTTCTACTTTCAACCTCACATCAGGTAGCCAGGTGCTTTTGATTAAGATTCAAAAAGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCGAAAAAGAGAGATGAAAG</pcr_primer_p1>
		<pcr_primer_p2>AGAAAAACGAAAAAGAATCTCTC</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>AGCGAAAAAGAGAGATGAAAGGAACATAGAGCAAAAAATGGGGAGCCGCCCTGGCGCCAGAGAGGAGGGTACTGCGAAGCAGTTGCAAAAGGGAGTCGCGGCCACTCCGGGCGGCACGACGGAGAGGATGATGGTCTTCTTCATACATGCACACATATTCCGTTTTTCGTTTTCTGAAGGCGCCAGGCGCCTTGTTCCGTGTGGCGGCCGCAAGCATTTTTTGCACTCCCTGGGAGTGGAGGACCCCCGAGAGATTCTTTTTCGTTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>AGCGAAAAAGAGAGATGAAAGGAACATAGAGCAAAAAATGGGGAGCCGCCCTGGCGCCAGAGAGGAGGGTACTGCGAAGCAGTTGCAAAAGGGAGTCGCGGCCACTCCGGGCGGCACGACGGAGAGGATGATGGTYTTCTTCATACATGCACACATATTCCGTTTTTCGTTTTCTGAAGGCGCCAGGCGCCTTGTTCCGTGTGGCGGCCGCAAGCATTTTTTGCACTCCCTGGGAGTGGAGGACCCCCGAGAGATTCTTTTTCGTTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36144</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>187608</contig_pos>
        <strand>+</strand>
        <context>ccgaatttgg[A/T]gtttgttatt</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGAGTGGGTAAACAGTCACGCTACATACATTCTCACATACCGAATTTGG</left_flank>
        <right_flank>GTTTGTTATTAGTAATGATAATGAAAAATATATATCTATAATTTAACTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCATTTTGGAGTTGTTGAATTCAATTCGATTCTGAGTTGTTGAATTCTTCAAACTTCGGAAAATTCCAGGAATTCAGAGAGCGCGGTAGAATATTTTTCTGAAGATCTCTCATTTTTATCTGCTCTTTCATAGTTTTTTCTCTCTTTTCAAGAATGCATTTTAACTTTTCCAGACATTTCCCTCCCTTTTAATTTTCCAAAATCCATACTAAAAAACTATTTTCACAAAATTAACTTTCGCTCAGAAATAGCGGTGATAAGAAAAACAATTGGGAGGTTAGACGGGAATGACGTAAATATTGCTTCCATAATTTTCTTAAAATTTGTACTGAAAAAGGAGAAGAACGTTTCCAGAAGACGTCAGAAACAACAAAATAGAAAGGGTCGGGCAAAAACTAATAAAAATTTCCGATTCATCCATCCGAATTCCAGCTCGAACGGTTAACTTTGAGTGGGTAAACAGTCACGCTACATACATTCTCACATACCGAATTTGGTGTTTGTTATTAGTAATGATAATGAAAAATATATATCTATAATTTAACTTTTTCTGATACATTTTCACCAACCTATTACGATGATGAATAATTTCAATAGAAAATCGTACCTTAATATGATTCAGCTGTTCATGACGCTTTCTTTGCATCTCCTCCTCCATGGCAAACGCACTTTTTGGTCCACCGTGATCTTTAGTTACAGTAGAAGGGTACTGAATGGCTTTTGCGAATTCTCTGTATGAATCCCAAGCCACCTGCCATTCATCTTCTGTCATCTCGAACAGTTCTGGCTTGAATATCTCCCAGTGCTGACGAATGTGTGAGAACGACGGACGGTTTCGGCCTTTTTGGGAAAGACACTGCTTGATGAGTAGTACTAGCCCACGTGGAGCTTCTTCTGGCATTGGTAAGTTAAGAATGCTGAAAAAACAAATTTGAAAGTTTTTTTTTTTTTTAATTCGACTCACTTTGTTCCGACACCAAAGATAATCGCCATTTGAG</canonical>
            <polymorphic>TTCCATTTTGGAGTTGTTGAATTCAATTCGATTCTGAGTTGTTGAATTCTTCAAACTTCGGAAAATTCCAGGAATTCAGAGAGCGCGGTAGAATATTTTTCTGAAGATCTCTCATTTTTATCTGCTCTTTCATAGTTTTTTCTCTCTTTTCAAGAATGCATTTTAACTTTTCCAGACATTTCCCTCCCTTTTAATTTTCCAAAATCCATACTAAAAAACTATTTTCACAAAATTAACTTTCGCTCAGAAATAGCGGTGATAAGAAAAACAATTGGGAGGTTAGACGGGAATGACGTAAATATTGCTTCCATAATTTTCTTAAAATTTGTACTGAAAAAGGAGAAGAACGTTTCCAGAAGACGTCAGAAACAACAAAATAGAAAGGGTCGGGCAAAAACTAATAAAAATTTCCGATTCATCCATCCGAATTCCAGCTCGAACGGTTAACTTTGAGTGGGTAAACAGTCACGCTACATACATTCTCACATACCGAATTTGGWGTTTGTTATTAGTAATGATAATGAAAAATATATATCTATAATTTAACTTTTTCTGATACATTTTCACCAACCTATTACGATGATGAATAATTTCAATAGAAAATCGTACCTTAATATGATTCAGCTGTTCATGACGCTTTCTTTGCATCTCCTCCTCCATGGCAAACGCACTTTTTGGTCCACCGTGATCTTTAGTTACAGTAGAAGGGTACTGAATGGCTTTTGCGAATTCTCTGTATGAATCCCAAGCCACCTGCCATTCATCTTCTGTCATCTCGAACAGTTCTGGCTTGAATATCTCCCAGTGCTGACGAATGTGTGAGAACGACGGACGGTTTCGGCCTTTTTGGGAAAGACACTGCTTGATGAGTAGTACTAGCCCACGTGGAGCTTCTTCTGGCATTGGTAAGTTAAGAATGCTGAAAAAACAAATTTGAAAGTTTTTTTTTTTTTTAATTCGACTCACTTTGTTCCGACACCAAAGATAATCGCCATTTGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>227 198 104 78 65 65 55 37 31 25 22 17 16 13 12 12 12 5 4 2</canonical_bands>
                <polymorphic_bands>227 198 104 81 78 65 55 37 31 25 22 17 13 12 12 12 5 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATTCGATTCTGAGTTGTTG</pcr_primer_p1>
		<pcr_primer_p2>GGTGAAAATGTATCAGAAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>545</pcr_amplicon_size>
		<canonical_amplicon>CAATTCGATTCTGAGTTGTTGAATTCTTCAAACTTCGGAAAATTCCAGGAATTCAGAGAGCGCGGTAGAATATTTTTCTGAAGATCTCTCATTTTTATCTGCTCTTTCATAGTTTTTTCTCTCTTTTCAAGAATGCATTTTAACTTTTCCAGACATTTCCCTCCCTTTTAATTTTCCAAAATCCATACTAAAAAACTATTTTCACAAAATTAACTTTCGCTCAGAAATAGCGGTGATAAGAAAAACAATTGGGAGGTTAGACGGGAATGACGTAAATATTGCTTCCATAATTTTCTTAAAATTTGTACTGAAAAAGGAGAAGAACGTTTCCAGAAGACGTCAGAAACAACAAAATAGAAAGGGTCGGGCAAAAACTAATAAAAATTTCCGATTCATCCATCCGAATTCCAGCTCGAACGGTTAACTTTGAGTGGGTAAACAGTCACGCTACATACATTCTCACATACCGAATTTGGTGTTTGTTATTAGTAATGATAATGAAAAATATATATCTATAATTTAACTTTTTCTGATACATTTTCACC</canonical_amplicon>
		<polymorphic_amplicon>CAATTCGATTCTGAGTTGTTGAATTCTTCAAACTTCGGAAAATTCCAGGAATTCAGAGAGCGCGGTAGAATATTTTTCTGAAGATCTCTCATTTTTATCTGCTCTTTCATAGTTTTTTCTCTCTTTTCAAGAATGCATTTTAACTTTTCCAGACATTTCCCTCCCTTTTAATTTTCCAAAATCCATACTAAAAAACTATTTTCACAAAATTAACTTTCGCTCAGAAATAGCGGTGATAAGAAAAACAATTGGGAGGTTAGACGGGAATGACGTAAATATTGCTTCCATAATTTTCTTAAAATTTGTACTGAAAAAGGAGAAGAACGTTTCCAGAAGACGTCAGAAACAACAAAATAGAAAGGGTCGGGCAAAAACTAATAAAAATTTCCGATTCATCCATCCGAATTCCAGCTCGAACGGTTAACTTTGAGTGGGTAAACAGTCACGCTACATACATTCTCACATACCGAATTTGGWGTTTGTTATTAGTAATGATAATGAAAAATATATATCTATAATTTAACTTTTTCTGATACATTTTCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36145</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>189583</contig_pos>
        <strand>+</strand>
        <context>TGGTCAGCGC[C/T]CTCACATGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAGAGTCATTGATTAACAGAAAAAAAGTGATTGGAGGTGTGGTCAGCGC</left_flank>
        <right_flank>CTCACATGGTCTGTTGAAAGACTGATAATGATAGAATGCAAGTTTTGTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATAGGCGTATTTGGTGCACTCTGTGTGACTAGTTCTGATCCATTTGAGCTCAAAAGACAGTTGAAAAATCAGAAGTACTAGCGTCTGCTGCACTTGATGGTTCTGCTTGCATCGGTCCGGGTTGTTCTGAAAATTTAGAATTTTGCTTGAAAAAAACATTTTTTATCAGAAGAAGAGCGTAGATCATACTCTCCAGCGTCTATTAGTATGAGTCACTTGGTAATGGCGCCATAAACTTCGAAAAGGGGTTAGACAGTGATATATTGACCCGAGGTGTAGGATCGAGATTTGCTGACTAGGGCGAAGTGGGCTATTAGAATGGTGTTTTCTAGCTTCAACCTCTGAATGCCCAATAAGTGAGTAATATTTCGAGAAAAAATCGAGAAAATCAAGAAAAGTGACGATAGTTTAGTGATAAGACTACTAACCTTCCCCTTACAAAAAGTGACAGAGTCATTGATTAACAGAAAAAAAGTGATTGGAGGTGTGGTCAGCGCCCTCACATGGTCTGTTGAAAGACTGATAATGATAGAATGCAAGTTTTGTGGGAATATTTACATTAAACTAACTTGGGGTGGGAAAGGGGAAACAATAAAATTTCATTTCTCAAATATTATGAATATCCAAACTTTCCGATATTCCCAGGTATTACTTCTTCTCTTACTTCTCGATTTTTAAACACTTATGTTTCATATATAAGATCATAGATCTTACTTATTGCAAGTTTCTAACATCCTGGATATTTCGTAACAGTTCTGTATGCTTTTGCATGAGCTACTCTGACCCATTCTCCGACTAGCTCAACGGGTCCCCGCTGACTCATGGTCCCGTTTTCTCTCTAGCTTTCTTATTCTTCTTCAGTGATGACGTCAATGGAGCACACGCACACACCAAAATAGATGGGTGAATGTGCCTTTTTTCTGTGAAAAAAAGAGAAATAGATGTCAGAAAAAAGAAACGAGGACTCCGATAGTTTAAATTTTTTTTCACAGATTCAT</canonical>
            <polymorphic>GTATAGGCGTATTTGGTGCACTCTGTGTGACTAGTTCTGATCCATTTGAGCTCAAAAGACAGTTGAAAAATCAGAAGTACTAGCGTCTGCTGCACTTGATGGTTCTGCTTGCATCGGTCCGGGTTGTTCTGAAAATTTAGAATTTTGCTTGAAAAAAACATTTTTTATCAGAAGAAGAGCGTAGATCATACTCTCCAGCGTCTATTAGTATGAGTCACTTGGTAATGGCGCCATAAACTTCGAAAAGGGGTTAGACAGTGATATATTGACCCGAGGTGTAGGATCGAGATTTGCTGACTAGGGCGAAGTGGGCTATTAGAATGGTGTTTTCTAGCTTCAACCTCTGAATGCCCAATAAGTGAGTAATATTTCGAGAAAAAATCGAGAAAATCAAGAAAAGTGACGATAGTTTAGTGATAAGACTACTAACCTTCCCCTTACAAAAAGTGACAGAGTCATTGATTAACAGAAAAAAAGTGATTGGAGGTGTGGTCAGCGCYCTCACATGGTCTGTTGAAAGACTGATAATGATAGAATGCAAGTTTTGTGGGAATATTTACATTAAACTAACTTGGGGTGGGAAAGGGGAAACAATAAAATTTCATTTCTCAAATATTATGAATATCCAAACTTTCCGATATTCCCAGGTATTACTTCTTCTCTTACTTCTCGATTTTTAAACACTTATGTTTCATATATAAGATCATAGATCTTACTTATTGCAAGTTTCTAACATCCTGGATATTTCGTAACAGTTCTGTATGCTTTTGCATGAGCTACTCTGACCCATTCTCCGACTAGCTCAACGGGTCCCCGCTGACTCATGGTCCCGTTTTCTCTCTAGCTTTCTTATTCTTCTTCAGTGATGACGTCAATGGAGCACACGCACACACCAAAATAGATGGGTGAATGTGCCTTTTTTCTGTGAAAAAAAGAGAAATAGATGTCAGAAAAAAGAAACGAGGACTCCGATAGTTTAAATTTTTTTTCACAGATTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>501 268 231</canonical_bands>
                <polymorphic_bands>769 231</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCTATTAGAATGGTGTTTTCTA</pcr_primer_p1>
		<pcr_primer_p2>TGTAAATATTCCCACAAAACTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGCTATTAGAATGGTGTTTTCTAGCTTCAACCTCTGAATGCCCAATAAGTGAGTAATATTTCGAGAAAAAATCGAGAAAATCAAGAAAAGTGACGATAGTTTAGTGATAAGACTACTAACCTTCCCCTTACAAAAAGTGACAGAGTCATTGATTAACAGAAAAAAAGTGATTGGAGGTGTGGTCAGCGCCCTCACATGGTCTGTTGAAAGACTGATAATGATAGAATGCAAGTTTTGTGGGAATATTTACA</canonical_amplicon>
		<polymorphic_amplicon>GGCTATTAGAATGGTGTTTTCTAGCTTCAACCTCTGAATGCCCAATAAGTGAGTAATATTTCGAGAAAAAATCGAGAAAATCAAGAAAAGTGACGATAGTTTAGTGATAAGACTACTAACCTTCCCCTTACAAAAAGTGACAGAGTCATTGATTAACAGAAAAAAAGTGATTGGAGGTGTGGTCAGCGCYCTCACATGGTCTGTTGAAAGACTGATAATGATAGAATGCAAGTTTTGTGGGAATATTTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36146</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>191499</contig_pos>
        <strand>+</strand>
        <context>GTTGAAGTAT[C/T]TKCAGAAACC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCATGATATAAAAATAGAAAACTACTCTAAATTATTGAGGTTGAAGTAT</left_flank>
        <right_flank>TTCAGAAACCCAAGGAATGACAGCGATGGTCATTTATGAATAATGGAGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGAAATCCATAGGAGGAAAGCGAAGAAAAGAAGAGGAGAGATCATAATTGCAGTGGTTTTGGCTAAGAAAAAATAGATAATAAAGAAATGTAGGTTGAATAGAAAAACTGAAAAACAACATTATATAAAAATACTGTATTTCCTTTAATAGAAGCACTCAAACCTTCGATTTTGAGCTCAATTATCTCGATTCCTATGAAAAGTATCAAAAATGCGTCATTTGGAAAAATGTTGATTATAATCTGAAAAACGGCTTATCAGTTGAGAAACTTTTGATATCTCTCACAGAAATAATGATAATTGAACTTCAAGTTGACGGATTGAGTGGTCTTCTGTTAGAGGAAATACGGTATATAGTTTGTCCATTAATTGTGGAATGAGAAAAAATTGATACTACTGTCTTTCAATATTAGGAGTAATCATAGTTTCCGGAAAAAAAGAGTCTACGTCATGATATAAAAATAGAAAACTACTCTAAATTATTGAGGTTGAAGTATTTTCAGAAACCCAAGGAATGACAGCGATGGTCATTTATGAATAATGGAGCAGGAATACATAACTGCTTTGAAAATATAATTTTTTAAATTGATAACTTAAGACATTTCCAGAAATGAGAAACTGTGTGGTTTGTTAAAAAGTTAGTTGTTGGACCAAACTGATTCCGTGCTTCAGTTTCCAACGTGAGTCGATCACCTGATTGTTGGTCGGAGAAAAACCTACGCGAACCGAAGAAGAAAAAAAAAGATATGAAGAGGAAGATGAAAAAGAAAGAGAAGAACACACGCATCGGTCCGTGTGAGTATGTGTGTATGAGGGTGGTGAGTTTGAGTGCCTATGTGTGTCTGTGTGTATGTCTCTGTTTGAATTACTCATCCATTCAATATGTGATTTTCTATGGGGCAGGTAATATATTTTTTTTAAAACATGCGAAAAAGAAAGAAATTTGATGGTTATCAGGAAGTTTGAATAAGTTTAATTGTAATAAAAGAGAAAGGAGC</canonical>
            <polymorphic>GAGGAAATCCATAGGAGGAAAGCGAAGAAAAGAAGAGGAGAGATCATAATTGCAGTGGTTTTGGCTAAGAAAAAATAGATAATAAAGAAATGTAGGTTGAATAGAAAAACTGAAAAACAACATTATATAAAAATACTGTATTTCCTTTAATAGAAGCACTCAAACCTTCGATTTTGAGCTCAATTATCTCGATTCCTATGAAAAGTATCAAAAATGCGTCATTTGGAAAAATGTTGATTATAATCTGAAAAACGGCTTATCAGTTGAGAAACTTTTGATATCTCTCACAGAAATAATGATAATTGAACTTCAAGTTGACGGATTGAGTGGTCTTCTGTTAGAGGAAATACGGTATATAGTTTGTCCATTAATTGTGGAATGAGAAAAAATTGATACTACTGTCTTTCAATATTAGGAGTAATCATAGTTTCCGGAAAAAAAGAGTCTACGTCATGATATAAAAATAGAAAACTACTCTAAATTATTGAGGTTGAAGTATYTTCAGAAACCCAAGGAATGACAGCGATGGTCATTTATGAATAATGGAGCAGGAATACATAACTGCTTTGAAAATATAATTTTTTAAATTGATAACTTAAGACATTTCCAGAAATGAGAAACTGTGTGGTTTGTTAAAAAGTTAGTTGTTGGACCAAACTGATTCCGTGCTTCAGTTTCCAACGTGAGTCGATCACCTGATTGTTGGTCGGAGAAAAACCTACGCGAACCGAAGAAGAAAAAAAAAGATATGAAGAGGAAGATGAAAAAGAAAGAGAAGAACACACGCATCGGTCCGTGTGAGTATGTGTGTATGAGGGTGGTGAGTTTGAGTGCCTATGTGTGTCTGTGTGTATGTCTCTGTTTGAATTACTCATCCATTCAATATGTGATTTTCTATGGGGCAGGTAATATATTTTTTTTAAAACATGCGAAAAAGAAAGAAATTTGATGGTTATCAGGAAGTTTGAATAAGTTTAATTGTAATAAAAGAGAAAGGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTAATTGTGGAATGAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCTGGAAATGTCTTAAGTTATCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CATTAATTGTGGAATGAGAAAAAATTGATACTACTGTCTTTCAATATTAGGAGTAATCATAGTTTCCGGAAAAAAAGAGTCTACGTCATGATATAAAAATAGAAAACTACTCTAAATTATTGAGGTTGAAGTATTTTCAGAAACCCAAGGAATGACAGCGATGGTCATTTATGAATAATGGAGCAGGAATACATAACTGCTTTGAAAATATAATTTTTTAAATTGATAACTTAAGACATTTCCAGAA</canonical_amplicon>
		<polymorphic_amplicon>CATTAATTGTGGAATGAGAAAAAATTGATACTACTGTCTTTCAATATTAGGAGTAATCATAGTTTCCGGAAAAAAAGAGTCTACGTCATGATATAAAAATAGAAAACTACTCTAAATTATTGAGGTTGAAGTATYTTCAGAAACCCAAGGAATGACAGCGATGGTCATTTATGAATAATGGAGCAGGAATACATAACTGCTTTGAAAATATAATTTTTTAAATTGATAACTTAAGACATTTCCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36147</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>191501</contig_pos>
        <strand>+</strand>
        <context>TGAAGTATYT[G/T]CAGAAACCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATGATATAAAAATAGAAAACTACTCTAAATTATTGAGGTTGAAGTATTT</left_flank>
        <right_flank>CAGAAACCCAAGGAATGACAGCGATGGTCATTTATGAATAATGGAGCAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAAATCCATAGGAGGAAAGCGAAGAAAAGAAGAGGAGAGATCATAATTGCAGTGGTTTTGGCTAAGAAAAAATAGATAATAAAGAAATGTAGGTTGAATAGAAAAACTGAAAAACAACATTATATAAAAATACTGTATTTCCTTTAATAGAAGCACTCAAACCTTCGATTTTGAGCTCAATTATCTCGATTCCTATGAAAAGTATCAAAAATGCGTCATTTGGAAAAATGTTGATTATAATCTGAAAAACGGCTTATCAGTTGAGAAACTTTTGATATCTCTCACAGAAATAATGATAATTGAACTTCAAGTTGACGGATTGAGTGGTCTTCTGTTAGAGGAAATACGGTATATAGTTTGTCCATTAATTGTGGAATGAGAAAAAATTGATACTACTGTCTTTCAATATTAGGAGTAATCATAGTTTCCGGAAAAAAAGAGTCTACGTCATGATATAAAAATAGAAAACTACTCTAAATTATTGAGGTTGAAGTATTTTCAGAAACCCAAGGAATGACAGCGATGGTCATTTATGAATAATGGAGCAGGAATACATAACTGCTTTGAAAATATAATTTTTTAAATTGATAACTTAAGACATTTCCAGAAATGAGAAACTGTGTGGTTTGTTAAAAAGTTAGTTGTTGGACCAAACTGATTCCGTGCTTCAGTTTCCAACGTGAGTCGATCACCTGATTGTTGGTCGGAGAAAAACCTACGCGAACCGAAGAAGAAAAAAAAAGATATGAAGAGGAAGATGAAAAAGAAAGAGAAGAACACACGCATCGGTCCGTGTGAGTATGTGTGTATGAGGGTGGTGAGTTTGAGTGCCTATGTGTGTCTGTGTGTATGTCTCTGTTTGAATTACTCATCCATTCAATATGTGATTTTCTATGGGGCAGGTAATATATTTTTTTTAAAACATGCGAAAAAGAAAGAAATTTGATGGTTATCAGGAAGTTTGAATAAGTTTAATTGTAATAAAAGAGAAAGGAGCGT</canonical>
            <polymorphic>GGAAATCCATAGGAGGAAAGCGAAGAAAAGAAGAGGAGAGATCATAATTGCAGTGGTTTTGGCTAAGAAAAAATAGATAATAAAGAAATGTAGGTTGAATAGAAAAACTGAAAAACAACATTATATAAAAATACTGTATTTCCTTTAATAGAAGCACTCAAACCTTCGATTTTGAGCTCAATTATCTCGATTCCTATGAAAAGTATCAAAAATGCGTCATTTGGAAAAATGTTGATTATAATCTGAAAAACGGCTTATCAGTTGAGAAACTTTTGATATCTCTCACAGAAATAATGATAATTGAACTTCAAGTTGACGGATTGAGTGGTCTTCTGTTAGAGGAAATACGGTATATAGTTTGTCCATTAATTGTGGAATGAGAAAAAATTGATACTACTGTCTTTCAATATTAGGAGTAATCATAGTTTCCGGAAAAAAAGAGTCTACGTCATGATATAAAAATAGAAAACTACTCTAAATTATTGAGGTTGAAGTATTTKCAGAAACCCAAGGAATGACAGCGATGGTCATTTATGAATAATGGAGCAGGAATACATAACTGCTTTGAAAATATAATTTTTTAAATTGATAACTTAAGACATTTCCAGAAATGAGAAACTGTGTGGTTTGTTAAAAAGTTAGTTGTTGGACCAAACTGATTCCGTGCTTCAGTTTCCAACGTGAGTCGATCACCTGATTGTTGGTCGGAGAAAAACCTACGCGAACCGAAGAAGAAAAAAAAAGATATGAAGAGGAAGATGAAAAAGAAAGAGAAGAACACACGCATCGGTCCGTGTGAGTATGTGTGTATGAGGGTGGTGAGTTTGAGTGCCTATGTGTGTCTGTGTGTATGTCTCTGTTTGAATTACTCATCCATTCAATATGTGATTTTCTATGGGGCAGGTAATATATTTTTTTTAAAACATGCGAAAAAGAAAGAAATTTGATGGTTATCAGGAAGTTTGAATAAGTTTAATTGTAATAAAAGAGAAAGGAGCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>293 258 244 205</canonical_bands>
                <polymorphic_bands>463 293 244</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTAATTGTGGAATGAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCTGGAAATGTCTTAAGTTATCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CATTAATTGTGGAATGAGAAAAAATTGATACTACTGTCTTTCAATATTAGGAGTAATCATAGTTTCCGGAAAAAAAGAGTCTACGTCATGATATAAAAATAGAAAACTACTCTAAATTATTGAGGTTGAAGTATTTTCAGAAACCCAAGGAATGACAGCGATGGTCATTTATGAATAATGGAGCAGGAATACATAACTGCTTTGAAAATATAATTTTTTAAATTGATAACTTAAGACATTTCCAGAA</canonical_amplicon>
		<polymorphic_amplicon>CATTAATTGTGGAATGAGAAAAAATTGATACTACTGTCTTTCAATATTAGGAGTAATCATAGTTTCCGGAAAAAAAGAGTCTACGTCATGATATAAAAATAGAAAACTACTCTAAATTATTGAGGTTGAAGTATTTKCAGAAACCCAAGGAATGACAGCGATGGTCATTTATGAATAATGGAGCAGGAATACATAACTGCTTTGAAAATATAATTTTTTAAATTGATAACTTAAGACATTTCCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36148</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>195045</contig_pos>
        <strand>+</strand>
        <context>TTTTGATTTT[C/T]TCAATAAGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTTTGATTCTTTTTTTACTGAAGTTAAATTTTTCGAAATTTTGATTTT</left_flank>
        <right_flank>TCAATAAGGTATTTCCTCCTTTTACAACAAGTTAATAATTACCAATGTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATAAATTTTGATTGATACGAAATCGGATTTTAGTCCAGATCAAGACAAGCGACGGCTTGCAATTTTACAGGTGCCAGTTTTCAAAATTTGACAAAAGTAGAAAAAACAATTTTCACTGAAAAACGACGCTTCTCTAATAAAAATTATGCTCTCAGGAACCCCACAAAAAATACAAGTGCCCCCTCTAATTGAAAGGCCCCTATAATTGAAGTGCCCCTCTAGACACCCCACAAAAAATAGAAGACGGGTGATCTGGCACTGTCGCGCTGGAAGCAAACTTTGATTTTTTCTCCAAGTTTTATTGCAGATATAAAAAACAGGTGTAATTGAGCAACCTATAAAAACGGGGTTCAAAACCTGCTTAAGAAACCTCTAAAGTGCTGAAATTGCAGTCCAAAGTTTGCTCAAAATTTACCATTAATTTCTCTTATATGGTTCGACTCCCACTCTTTTGATTCTTTTTTTACTGAAGTTAAATTTTTCGAAATTTTGATTTTCTCAATAAGGTATTTCCTCCTTTTACAACAAGTTAATAATTACCAATGTGGAGACTCATTGCAGTATTCGTCGCCACAATACTCATTGATTGAAGGTTTTCCTAAAAATTACCTCTGCTAAAATGATCAACACCACTAACAACTTTCATTTCTGTAACCTCAGTATTTCAAAATTTGAAAACGTTTGAAACCCAAGTTATATGTCTAGCATTGAGCACGACTGTAATTTGATTTCTTTACAAGACTTATTCTTATCGAACCACCACCAATTTCTGATCCTATTAAAAATTATTGCATTAAAATTCGATCAACCAACCATGTTTGTCGAATTACAACAATTTTCGAAGTTTTAAGCCTTATTTCGTTTTATCGAAAGTTCCACTCGCATCATAATATTCTTCCATATAAGAGTTTCCCTGAACTTTTTTCACTTATCTTTTTTTCTAGTCAATATTCAAAATCTCTAAAATGAGTGAGTTCTTTTGTGGAAAGTTCACTATC</canonical>
            <polymorphic>AAATAAATTTTGATTGATACGAAATCGGATTTTAGTCCAGATCAAGACAAGCGACGGCTTGCAATTTTACAGGTGCCAGTTTTCAAAATTTGACAAAAGTAGAAAAAACAATTTTCACTGAAAAACGACGCTTCTCTAATAAAAATTATGCTCTCAGGAACCCCACAAAAAATACAAGTGCCCCCTCTAATTGAAAGGCCCCTATAATTGAAGTGCCCCTCTAGACACCCCACAAAAAATAGAAGACGGGTGATCTGGCACTGTCGCGCTGGAAGCAAACTTTGATTTTTTCTCCAAGTTTTATTGCAGATATAAAAAACAGGTGTAATTGAGCAACCTATAAAAACGGGGTTCAAAACCTGCTTAAGAAACCTCTAAAGTGCTGAAATTGCAGTCCAAAGTTTGCTCAAAATTTACCATTAATTTCTCTTATATGGTTCGACTCCCACTCTTTTGATTCTTTTTTTACTGAAGTTAAATTTTTCGAAATTTTGATTTTYTCAATAAGGTATTTCCTCCTTTTACAACAAGTTAATAATTACCAATGTGGAGACTCATTGCAGTATTCGTCGCCACAATACTCATTGATTGAAGGTTTTCCTAAAAATTACCTCTGCTAAAATGATCAACACCACTAACAACTTTCATTTCTGTAACCTCAGTATTTCAAAATTTGAAAACGTTTGAAACCCAAGTTATATGTCTAGCATTGAGCACGACTGTAATTTGATTTCTTTACAAGACTTATTCTTATCGAACCACCACCAATTTCTGATCCTATTAAAAATTATTGCATTAAAATTCGATCAACCAACCATGTTTGTCGAATTACAACAATTTTCGAAGTTTTAAGCCTTATTTCGTTTTATCGAAAGTTCCACTCGCATCATAATATTCTTCCATATAAGAGTTTCCCTGAACTTTTTTCACTTATCTTTTTTTCTAGTCAATATTCAAAATCTCTAAAATGAGTGAGTTCTTTTGTGGAAAGTTCACTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTTGCTCAAAATTTACCATTA</pcr_primer_p1>
		<pcr_primer_p2>AATGAAAGTTGTTAGTGGTGTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTTTGCTCAAAATTTACCATTAATTTCTCTTATATGGTTCGACTCCCACTCTTTTGATTCTTTTTTTACTGAAGTTAAATTTTTCGAAATTTTGATTTTCTCAATAAGGTATTTCCTCCTTTTACAACAAGTTAATAATTACCAATGTGGAGACTCATTGCAGTATTCGTCGCCACAATACTCATTGATTGAAGGTTTTCCTAAAAATTACCTCTGCTAAAATGATCAACACCACTAACAACTTTCATT</canonical_amplicon>
		<polymorphic_amplicon>AGTTTGCTCAAAATTTACCATTAATTTCTCTTATATGGTTCGACTCCCACTCTTTTGATTCTTTTTTTACTGAAGTTAAATTTTTCGAAATTTTGATTTTYTCAATAAGGTATTTCCTCCTTTTACAACAAGTTAATAATTACCAATGTGGAGACTCATTGCAGTATTCGTCGCCACAATACTCATTGATTGAAGGTTTTCCTAAAAATTACCTCTGCTAAAATGATCAACACCACTAACAACTTTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36149</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>195212</contig_pos>
        <strand>+</strand>
        <context>CCTCAGTATT[C/T]CARAATTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAAAATGATCAACACCACTAACAACTTTCATTTCTGTAACCTCAGTATT</left_flank>
        <right_flank>CAAAATTTGAAAACGTTTGAAACCCAAGTTATATGTCTAGCATTGAGCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATACAAGTGCCCCCTCTAATTGAAAGGCCCCTATAATTGAAGTGCCCCTCTAGACACCCCACAAAAAATAGAAGACGGGTGATCTGGCACTGTCGCGCTGGAAGCAAACTTTGATTTTTTCTCCAAGTTTTATTGCAGATATAAAAAACAGGTGTAATTGAGCAACCTATAAAAACGGGGTTCAAAACCTGCTTAAGAAACCTCTAAAGTGCTGAAATTGCAGTCCAAAGTTTGCTCAAAATTTACCATTAATTTCTCTTATATGGTTCGACTCCCACTCTTTTGATTCTTTTTTTACTGAAGTTAAATTTTTCGAAATTTTGATTTTCTCAATAAGGTATTTCCTCCTTTTACAACAAGTTAATAATTACCAATGTGGAGACTCATTGCAGTATTCGTCGCCACAATACTCATTGATTGAAGGTTTTCCTAAAAATTACCTCTGCTAAAATGATCAACACCACTAACAACTTTCATTTCTGTAACCTCAGTATTTCAAAATTTGAAAACGTTTGAAACCCAAGTTATATGTCTAGCATTGAGCACGACTGTAATTTGATTTCTTTACAAGACTTATTCTTATCGAACCACCACCAATTTCTGATCCTATTAAAAATTATTGCATTAAAATTCGATCAACCAACCATGTTTGTCGAATTACAACAATTTTCGAAGTTTTAAGCCTTATTTCGTTTTATCGAAAGTTCCACTCGCATCATAATATTCTTCCATATAAGAGTTTCCCTGAACTTTTTTCACTTATCTTTTTTTCTAGTCAATATTCAAAATCTCTAAAATGAGTGAGTTCTTTTGTGGAAAGTTCACTATCTTCTATGTTTTATTCAGATCAAGAAATCAAGAACTACGAATATATACAATGTCCAAAAATGCAGGAAACCGGCGTATCGAAAAGCTTAGAGTTTGTATTATCTGCAAAAAATTTGTCTGATTGGGACCAAGCTCACGAAGACCCTGGCTACGCCTACATTATTCATA</canonical>
            <polymorphic>AAAAATACAAGTGCCCCCTCTAATTGAAAGGCCCCTATAATTGAAGTGCCCCTCTAGACACCCCACAAAAAATAGAAGACGGGTGATCTGGCACTGTCGCGCTGGAAGCAAACTTTGATTTTTTCTCCAAGTTTTATTGCAGATATAAAAAACAGGTGTAATTGAGCAACCTATAAAAACGGGGTTCAAAACCTGCTTAAGAAACCTCTAAAGTGCTGAAATTGCAGTCCAAAGTTTGCTCAAAATTTACCATTAATTTCTCTTATATGGTTCGACTCCCACTCTTTTGATTCTTTTTTTACTGAAGTTAAATTTTTCGAAATTTTGATTTTCTCAATAAGGTATTTCCTCCTTTTACAACAAGTTAATAATTACCAATGTGGAGACTCATTGCAGTATTCGTCGCCACAATACTCATTGATTGAAGGTTTTCCTAAAAATTACCTCTGCTAAAATGATCAACACCACTAACAACTTTCATTTCTGTAACCTCAGTATTYCAAAATTTGAAAACGTTTGAAACCCAAGTTATATGTCTAGCATTGAGCACGACTGTAATTTGATTTCTTTACAAGACTTATTCTTATCGAACCACCACCAATTTCTGATCCTATTAAAAATTATTGCATTAAAATTCGATCAACCAACCATGTTTGTCGAATTACAACAATTTTCGAAGTTTTAAGCCTTATTTCGTTTTATCGAAAGTTCCACTCGCATCATAATATTCTTCCATATAAGAGTTTCCCTGAACTTTTTTCACTTATCTTTTTTTCTAGTCAATATTCAAAATCTCTAAAATGAGTGAGTTCTTTTGTGGAAAGTTCACTATCTTCTATGTTTTATTCAGATCAAGAAATCAAGAACTACGAATATATACAATGTCCAAAAATGCAGGAAACCGGCGTATCGAAAAGCTTAGAGTTTGTATTATCTGCAAAAAATTTGTCTGATTGGGACCAAGCTCACGAAGACCCTGGCTACGCCTACATTATTCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGGTTTTCCTAAAAATTACC</pcr_primer_p1>
		<pcr_primer_p2>AATTGTTGTAATTCGACAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAAGGTTTTCCTAAAAATTACCTCTGCTAAAATGATCAACACCACTAACAACTTTCATTTCTGTAACCTCAGTATTTCAAAATTTGAAAACGTTTGAAACCCAAGTTATATGTCTAGCATTGAGCACGACTGTAATTTGATTTCTTTACAAGACTTATTCTTATCGAACCACCACCAATTTCTGATCCTATTAAAAATTATTGCATTAAAATTCGATCAACCAACCATGTTTGTCGAATTACAACAATT</canonical_amplicon>
		<polymorphic_amplicon>TGAAGGTTTTCCTAAAAATTACCTCTGCTAAAATGATCAACACCACTAACAACTTTCATTTCTGTAACCTCAGTATTYCAAAATTTGAAAACGTTTGAAACCCAAGTTATATGTCTAGCATTGAGCACGACTGTAATTTGATTTCTTTACAAGACTTATTCTTATCGAACCACCACCAATTTCTGATCCTATTAAAAATTATTGCATTAAAATTCGATCAACCAACCATGTTTGTCGAATTACAACAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36150</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>195215</contig_pos>
        <strand>+</strand>
        <context>CAGTATTYCA[A/G]AATTTGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATGATCAACACCACTAACAACTTTCATTTCTGTAACCTCAGTATTTCA</left_flank>
        <right_flank>AATTTGAAAACGTTTGAAACCCAAGTTATATGTCTAGCATTGAGCACGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATACAAGTGCCCCCTCTAATTGAAAGGCCCCTATAATTGAAGTGCCCCTCTAGACACCCCACAAAAAATAGAAGACGGGTGATCTGGCACTGTCGCGCTGGAAGCAAACTTTGATTTTTTCTCCAAGTTTTATTGCAGATATAAAAAACAGGTGTAATTGAGCAACCTATAAAAACGGGGTTCAAAACCTGCTTAAGAAACCTCTAAAGTGCTGAAATTGCAGTCCAAAGTTTGCTCAAAATTTACCATTAATTTCTCTTATATGGTTCGACTCCCACTCTTTTGATTCTTTTTTTACTGAAGTTAAATTTTTCGAAATTTTGATTTTCTCAATAAGGTATTTCCTCCTTTTACAACAAGTTAATAATTACCAATGTGGAGACTCATTGCAGTATTCGTCGCCACAATACTCATTGATTGAAGGTTTTCCTAAAAATTACCTCTGCTAAAATGATCAACACCACTAACAACTTTCATTTCTGTAACCTCAGTATTTCAAAATTTGAAAACGTTTGAAACCCAAGTTATATGTCTAGCATTGAGCACGACTGTAATTTGATTTCTTTACAAGACTTATTCTTATCGAACCACCACCAATTTCTGATCCTATTAAAAATTATTGCATTAAAATTCGATCAACCAACCATGTTTGTCGAATTACAACAATTTTCGAAGTTTTAAGCCTTATTTCGTTTTATCGAAAGTTCCACTCGCATCATAATATTCTTCCATATAAGAGTTTCCCTGAACTTTTTTCACTTATCTTTTTTTCTAGTCAATATTCAAAATCTCTAAAATGAGTGAGTTCTTTTGTGGAAAGTTCACTATCTTCTATGTTTTATTCAGATCAAGAAATCAAGAACTACGAATATATACAATGTCCAAAAATGCAGGAAACCGGCGTATCGAAAAGCTTAGAGTTTGTATTATCTGCAAAAAATTTGTCTGATTGGGACCAAGCTCACGAAGACCCTGGCTACGCCTACATTATTCATAATC</canonical>
            <polymorphic>AATACAAGTGCCCCCTCTAATTGAAAGGCCCCTATAATTGAAGTGCCCCTCTAGACACCCCACAAAAAATAGAAGACGGGTGATCTGGCACTGTCGCGCTGGAAGCAAACTTTGATTTTTTCTCCAAGTTTTATTGCAGATATAAAAAACAGGTGTAATTGAGCAACCTATAAAAACGGGGTTCAAAACCTGCTTAAGAAACCTCTAAAGTGCTGAAATTGCAGTCCAAAGTTTGCTCAAAATTTACCATTAATTTCTCTTATATGGTTCGACTCCCACTCTTTTGATTCTTTTTTTACTGAAGTTAAATTTTTCGAAATTTTGATTTTCTCAATAAGGTATTTCCTCCTTTTACAACAAGTTAATAATTACCAATGTGGAGACTCATTGCAGTATTCGTCGCCACAATACTCATTGATTGAAGGTTTTCCTAAAAATTACCTCTGCTAAAATGATCAACACCACTAACAACTTTCATTTCTGTAACCTCAGTATTTCARAATTTGAAAACGTTTGAAACCCAAGTTATATGTCTAGCATTGAGCACGACTGTAATTTGATTTCTTTACAAGACTTATTCTTATCGAACCACCACCAATTTCTGATCCTATTAAAAATTATTGCATTAAAATTCGATCAACCAACCATGTTTGTCGAATTACAACAATTTTCGAAGTTTTAAGCCTTATTTCGTTTTATCGAAAGTTCCACTCGCATCATAATATTCTTCCATATAAGAGTTTCCCTGAACTTTTTTCACTTATCTTTTTTTCTAGTCAATATTCAAAATCTCTAAAATGAGTGAGTTCTTTTGTGGAAAGTTCACTATCTTCTATGTTTTATTCAGATCAAGAAATCAAGAACTACGAATATATACAATGTCCAAAAATGCAGGAAACCGGCGTATCGAAAAGCTTAGAGTTTGTATTATCTGCAAAAAATTTGTCTGATTGGGACCAAGCTCACGAAGACCCTGGCTACGCCTACATTATTCATAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>310 240 183 129 67 61 10</canonical_bands>
                <polymorphic_bands>312 310 240 67 61 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAGGTTTTCCTAAAAATTACC</pcr_primer_p1>
		<pcr_primer_p2>AATTGTTGTAATTCGACAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAAGGTTTTCCTAAAAATTACCTCTGCTAAAATGATCAACACCACTAACAACTTTCATTTCTGTAACCTCAGTATTTCAAAATTTGAAAACGTTTGAAACCCAAGTTATATGTCTAGCATTGAGCACGACTGTAATTTGATTTCTTTACAAGACTTATTCTTATCGAACCACCACCAATTTCTGATCCTATTAAAAATTATTGCATTAAAATTCGATCAACCAACCATGTTTGTCGAATTACAACAATT</canonical_amplicon>
		<polymorphic_amplicon>TGAAGGTTTTCCTAAAAATTACCTCTGCTAAAATGATCAACACCACTAACAACTTTCATTTCTGTAACCTCAGTATTTCARAATTTGAAAACGTTTGAAACCCAAGTTATATGTCTAGCATTGAGCACGACTGTAATTTGATTTCTTTACAAGACTTATTCTTATCGAACCACCACCAATTTCTGATCCTATTAAAAATTATTGCATTAAAATTCGATCAACCAACCATGTTTGTCGAATTACAACAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36151</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>195231</contig_pos>
        <strand>+</strand>
        <context>GAAAACGTTT[A/G]AAACCCAAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAACAACTTTCATTTCTGTAACCTCAGTATTTCAAAATTTGAAAACGTTT</left_flank>
        <right_flank>AAACCCAAGTTATATGTCTAGCATTGAGCACGACTGTAATTTGATTTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAATTGAAAGGCCCCTATAATTGAAGTGCCCCTCTAGACACCCCACAAAAAATAGAAGACGGGTGATCTGGCACTGTCGCGCTGGAAGCAAACTTTGATTTTTTCTCCAAGTTTTATTGCAGATATAAAAAACAGGTGTAATTGAGCAACCTATAAAAACGGGGTTCAAAACCTGCTTAAGAAACCTCTAAAGTGCTGAAATTGCAGTCCAAAGTTTGCTCAAAATTTACCATTAATTTCTCTTATATGGTTCGACTCCCACTCTTTTGATTCTTTTTTTACTGAAGTTAAATTTTTCGAAATTTTGATTTTCTCAATAAGGTATTTCCTCCTTTTACAACAAGTTAATAATTACCAATGTGGAGACTCATTGCAGTATTCGTCGCCACAATACTCATTGATTGAAGGTTTTCCTAAAAATTACCTCTGCTAAAATGATCAACACCACTAACAACTTTCATTTCTGTAACCTCAGTATTTCAAAATTTGAAAACGTTTGAAACCCAAGTTATATGTCTAGCATTGAGCACGACTGTAATTTGATTTCTTTACAAGACTTATTCTTATCGAACCACCACCAATTTCTGATCCTATTAAAAATTATTGCATTAAAATTCGATCAACCAACCATGTTTGTCGAATTACAACAATTTTCGAAGTTTTAAGCCTTATTTCGTTTTATCGAAAGTTCCACTCGCATCATAATATTCTTCCATATAAGAGTTTCCCTGAACTTTTTTCACTTATCTTTTTTTCTAGTCAATATTCAAAATCTCTAAAATGAGTGAGTTCTTTTGTGGAAAGTTCACTATCTTCTATGTTTTATTCAGATCAAGAAATCAAGAACTACGAATATATACAATGTCCAAAAATGCAGGAAACCGGCGTATCGAAAAGCTTAGAGTTTGTATTATCTGCAAAAAATTTGTCTGATTGGGACCAAGCTCACGAAGACCCTGGCTACGCCTACATTATTCATAATCGTGAACCAAAGGACCC</canonical>
            <polymorphic>CTAATTGAAAGGCCCCTATAATTGAAGTGCCCCTCTAGACACCCCACAAAAAATAGAAGACGGGTGATCTGGCACTGTCGCGCTGGAAGCAAACTTTGATTTTTTCTCCAAGTTTTATTGCAGATATAAAAAACAGGTGTAATTGAGCAACCTATAAAAACGGGGTTCAAAACCTGCTTAAGAAACCTCTAAAGTGCTGAAATTGCAGTCCAAAGTTTGCTCAAAATTTACCATTAATTTCTCTTATATGGTTCGACTCCCACTCTTTTGATTCTTTTTTTACTGAAGTTAAATTTTTCGAAATTTTGATTTTCTCAATAAGGTATTTCCTCCTTTTACAACAAGTTAATAATTACCAATGTGGAGACTCATTGCAGTATTCGTCGCCACAATACTCATTGATTGAAGGTTTTCCTAAAAATTACCTCTGCTAAAATGATCAACACCACTAACAACTTTCATTTCTGTAACCTCAGTATTTCAAAATTTGAAAACGTTTRAAACCCAAGTTATATGTCTAGCATTGAGCACGACTGTAATTTGATTTCTTTACAAGACTTATTCTTATCGAACCACCACCAATTTCTGATCCTATTAAAAATTATTGCATTAAAATTCGATCAACCAACCATGTTTGTCGAATTACAACAATTTTCGAAGTTTTAAGCCTTATTTCGTTTTATCGAAAGTTCCACTCGCATCATAATATTCTTCCATATAAGAGTTTCCCTGAACTTTTTTCACTTATCTTTTTTTCTAGTCAATATTCAAAATCTCTAAAATGAGTGAGTTCTTTTGTGGAAAGTTCACTATCTTCTATGTTTTATTCAGATCAAGAAATCAAGAACTACGAATATATACAATGTCCAAAAATGCAGGAAACCGGCGTATCGAAAAGCTTAGAGTTTGTATTATCTGCAAAAAATTTGTCTGATTGGGACCAAGCTCACGAAGACCCTGGCTACGCCTACATTATTCATAATCGTGAACCAAAGGACCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGGTTTTCCTAAAAATTACC</pcr_primer_p1>
		<pcr_primer_p2>AATTGTTGTAATTCGACAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAAGGTTTTCCTAAAAATTACCTCTGCTAAAATGATCAACACCACTAACAACTTTCATTTCTGTAACCTCAGTATTTCAAAATTTGAAAACGTTTGAAACCCAAGTTATATGTCTAGCATTGAGCACGACTGTAATTTGATTTCTTTACAAGACTTATTCTTATCGAACCACCACCAATTTCTGATCCTATTAAAAATTATTGCATTAAAATTCGATCAACCAACCATGTTTGTCGAATTACAACAATT</canonical_amplicon>
		<polymorphic_amplicon>TGAAGGTTTTCCTAAAAATTACCTCTGCTAAAATGATCAACACCACTAACAACTTTCATTTCTGTAACCTCAGTATTTCAAAATTTGAAAACGTTTRAAACCCAAGTTATATGTCTAGCATTGAGCACGACTGTAATTTGATTTCTTTACAAGACTTATTCTTATCGAACCACCACCAATTTCTGATCCTATTAAAAATTATTGCATTAAAATTCGATCAACCAACCATGTTTGTCGAATTACAACAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36152</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>195322</contig_pos>
        <strand>+</strand>
        <context>AATTTCTGAT[C/T]CTATTAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGATTTCTTTACAAGACTTATTCTTATCGAACCACCACCAATTTCTGAT</left_flank>
        <right_flank>CTATTAAAAATTATTGCATTAAAATTCGATCAACCAACCATGTTTGTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTTTGATTTTTTCTCCAAGTTTTATTGCAGATATAAAAAACAGGTGTAATTGAGCAACCTATAAAAACGGGGTTCAAAACCTGCTTAAGAAACCTCTAAAGTGCTGAAATTGCAGTCCAAAGTTTGCTCAAAATTTACCATTAATTTCTCTTATATGGTTCGACTCCCACTCTTTTGATTCTTTTTTTACTGAAGTTAAATTTTTCGAAATTTTGATTTTCTCAATAAGGTATTTCCTCCTTTTACAACAAGTTAATAATTACCAATGTGGAGACTCATTGCAGTATTCGTCGCCACAATACTCATTGATTGAAGGTTTTCCTAAAAATTACCTCTGCTAAAATGATCAACACCACTAACAACTTTCATTTCTGTAACCTCAGTATTTCAAAATTTGAAAACGTTTGAAACCCAAGTTATATGTCTAGCATTGAGCACGACTGTAATTTGATTTCTTTACAAGACTTATTCTTATCGAACCACCACCAATTTCTGATCCTATTAAAAATTATTGCATTAAAATTCGATCAACCAACCATGTTTGTCGAATTACAACAATTTTCGAAGTTTTAAGCCTTATTTCGTTTTATCGAAAGTTCCACTCGCATCATAATATTCTTCCATATAAGAGTTTCCCTGAACTTTTTTCACTTATCTTTTTTTCTAGTCAATATTCAAAATCTCTAAAATGAGTGAGTTCTTTTGTGGAAAGTTCACTATCTTCTATGTTTTATTCAGATCAAGAAATCAAGAACTACGAATATATACAATGTCCAAAAATGCAGGAAACCGGCGTATCGAAAAGCTTAGAGTTTGTATTATCTGCAAAAAATTTGTCTGATTGGGACCAAGCTCACGAAGACCCTGGCTACGCCTACATTATTCATAATCGTGAACCAAAGGACCCCAGGACACAATTTTCGAATATATTATTGTTTTACTGGCGAAAACACTGGAGATTCGTTCTTGGTGGATTAGGACTTTTTATTTTATTGCTT</canonical>
            <polymorphic>AACTTTGATTTTTTCTCCAAGTTTTATTGCAGATATAAAAAACAGGTGTAATTGAGCAACCTATAAAAACGGGGTTCAAAACCTGCTTAAGAAACCTCTAAAGTGCTGAAATTGCAGTCCAAAGTTTGCTCAAAATTTACCATTAATTTCTCTTATATGGTTCGACTCCCACTCTTTTGATTCTTTTTTTACTGAAGTTAAATTTTTCGAAATTTTGATTTTCTCAATAAGGTATTTCCTCCTTTTACAACAAGTTAATAATTACCAATGTGGAGACTCATTGCAGTATTCGTCGCCACAATACTCATTGATTGAAGGTTTTCCTAAAAATTACCTCTGCTAAAATGATCAACACCACTAACAACTTTCATTTCTGTAACCTCAGTATTTCAAAATTTGAAAACGTTTGAAACCCAAGTTATATGTCTAGCATTGAGCACGACTGTAATTTGATTTCTTTACAAGACTTATTCTTATCGAACCACCACCAATTTCTGATYCTATTAAAAATTATTGCATTAAAATTCGATCAACCAACCATGTTTGTCGAATTACAACAATTTTCGAAGTTTTAAGCCTTATTTCGTTTTATCGAAAGTTCCACTCGCATCATAATATTCTTCCATATAAGAGTTTCCCTGAACTTTTTTCACTTATCTTTTTTTCTAGTCAATATTCAAAATCTCTAAAATGAGTGAGTTCTTTTGTGGAAAGTTCACTATCTTCTATGTTTTATTCAGATCAAGAAATCAAGAACTACGAATATATACAATGTCCAAAAATGCAGGAAACCGGCGTATCGAAAAGCTTAGAGTTTGTATTATCTGCAAAAAATTTGTCTGATTGGGACCAAGCTCACGAAGACCCTGGCTACGCCTACATTATTCATAATCGTGAACCAAAGGACCCCAGGACACAATTTTCGAATATATTATTGTTTTACTGGCGAAAACACTGGAGATTCGTTCTTGGTGGATTAGGACTTTTTATTTTATTGCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>346 261 212 150 31</canonical_bands>
                <polymorphic_bands>346 261 212 181</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAGGTTTTCCTAAAAATTACC</pcr_primer_p1>
		<pcr_primer_p2>AATTGTTGTAATTCGACAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAAGGTTTTCCTAAAAATTACCTCTGCTAAAATGATCAACACCACTAACAACTTTCATTTCTGTAACCTCAGTATTTCAAAATTTGAAAACGTTTGAAACCCAAGTTATATGTCTAGCATTGAGCACGACTGTAATTTGATTTCTTTACAAGACTTATTCTTATCGAACCACCACCAATTTCTGATCCTATTAAAAATTATTGCATTAAAATTCGATCAACCAACCATGTTTGTCGAATTACAACAATT</canonical_amplicon>
		<polymorphic_amplicon>TGAAGGTTTTCCTAAAAATTACCTCTGCTAAAATGATCAACACCACTAACAACTTTCATTTCTGTAACCTCAGTATTTCAAAATTTGAAAACGTTTGAAACCCAAGTTATATGTCTAGCATTGAGCACGACTGTAATTTGATTTCTTTACAAGACTTATTCTTATCGAACCACCACCAATTTCTGATYCTATTAAAAATTATTGCATTAAAATTCGATCAACCAACCATGTTTGTCGAATTACAACAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36153</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>205243</contig_pos>
        <strand></strand>
        <context>AAAACATTCG[G/C]ATTCATCCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCG</left_flank>
        <right_flank>ATTCATCCATTTTATCCAGAACTTCCAAACCTAAATTTATTAGAAATTGC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGTCATATTCAGTCTTTTTTTGCTGATAGTAAATCAATTAAAAGTATGACTTCTGTTTTGAATATAGTTTTAAAAGGGACAGAGATGCCTGCAGGTAACGTTAAATAAATCCGACGAGGTCTCCTTTTTTGTATGAACACCTACCGACCCACTTTCCCATAGGGTGAGATCGGTTTAGTGCGTCACCTCAATCAATAACCATAATTATGTCATTACTTTGTGCAATTGAACAGCAGTAAAAATTTTGAGAAGGGATTTCTGCGACGCCTCTTTTTTTTTGTTTTCATTTCACTCTTCATTTTGTCTGATTCATACCAAAGCTTGAAGTACACTCCCCTTTAATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTAGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGGATTCATCCATTTTATCCAGAACTTCCAAACCTAAATTTATTAGAAATTGCTACATACATTTTACTATCAGTTTTCTACACACTTTGACCAACAATACGAATCTAAAAATAACACCTTTTGAAATAGGGATTTTTTTTTGAACATTATAAATTGATTCAGCTTGTCTAGTTACTAAGCGTTATACTGAACTTTGGTAAATAATTATTGCACCTTGAAAATAACTAGATGATATGATCTCTTCAACAGGTACTCTTGTCTTGCTAATATATTTTTGATCTTCCGAAAATTTAATTAGAAAACAGTCTAGTATTTTTGATCTACGGAAGATTGAACAAAGAAATCATAAACAGTTCAAGTTTTTTATTGACTTTCGCTACTGAATCCAATTTCTAACAGTTTTCAACGAACTTTCAACAGATTTTTTTCCGGTTCCTCTATCTTTCGTTGGTTTCCCAACAAAAATTCTCATTAGAAGTTAAAGGTGGGGGGACAGGAGATTT</canonical>
            <polymorphic>GAGTCATATTCAGTCTTTTTTTGCTGATAGTAAATCAATTAAAAGTATGACTTCTGTTTTGAATATAGTTTTAAAAGGGACAGAGATGCCTGCAGGTAACGTTAAATAAATCCGACGAGGTCTCCTTTTTTGTATGAACACCTACCGACCCACTTTCCCATAGGGTGAGATCGGTTTAGTGCGTCACCTCAATCAATAACCATAATTATGTCATTACTTTGTGCAATTGAACAGCAGTAAAAATTTTGAGAAGGGATTTCTGCGACGCCTCTTTTTTTTTGTTTTCATTTCACTCTTCATTTTGTCTGATTCATACCAAAGCTTGAAGTACACTCCCCTTTAATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTAGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGSATTCATCCATTTTATCCAGAACTTCCAAACCTAAATTTATTAGAAATTGCTACATACATTTTACTATCAGTTTTCTACACACTTTGACCAACAATACGAATCTAAAAATAACACCTTTTGAAATAGGGATTTTTTTTTGAACATTATAAATTGATTCAGCTTGTCTAGTTACTAAGCGTTATACTGAACTTTGGTAAATAATTATTGCACCTTGAAAATAACTAGATGATATGATCTCTTCAACAGGTACTCTTGTCTTGCTAATATATTTTTGATCTTCCGAAAATTTAATTAGAAAACAGTCTAGTATTTTTGATCTACGGAAGATTGAACAAAGAAATCATAAACAGTTCAAGTTTTTTATTGACTTTCGCTACTGAATCCAATTTCTAACAGTTTTCAACGAACTTTCAACAGATTTTTTTCCGGTTCCTCTATCTTTCGTTGGTTTCCCAACAAAAATTCTCATTAGAAGTTAAAGGTGGGGGGACAGGAGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>307 226 121 106 98 86 55 1</canonical_bands>
                <polymorphic_bands>307 226 204 121 86 55 1</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>282 219 194 192 113</canonical_bands>
                <polymorphic_bands>474 219 194 113</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>308 226 121 106 98 86 55</canonical_bands>
                <polymorphic_bands>308 226 204 121 86 55</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCCCTTCATATTTTACCTGAT</pcr_primer_p1>
		<pcr_primer_p2>TTGGTCAAAGTGTGTAGAAAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTAGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGGATTCATCCATTTTATCCAGAACTTCCAAACCTAAATTTATTAGAAATTGCTACATACATTTTACTATCAGTTTTCTACACACTTTGACCAA</canonical_amplicon>
		<polymorphic_amplicon>AATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTAGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGSATTCATCCATTTTATCCAGAACTTCCAAACCTAAATTTATTAGAAATTGCTACATACATTTTACTATCAGTTTTCTACACACTTTGACCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36154</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>205373</contig_pos>
        <strand></strand>
        <context>GAAATAGGGA[T/A]TTTTTTTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CACTTTGACCAACAATACGAATCTAAAAATAACACCTTTTGAAATAGGGA</left_flank>
        <right_flank>TTTTTTTTGAACATTATAAATTGATTCAGCTTGTCTAGTTACTAAGCGTT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTATGAACACCTACCGACCCACTTTCCCATAGGGTGAGATCGGTTTAGTGCGTCACCTCAATCAATAACCATAATTATGTCATTACTTTGTGCAATTGAACAGCAGTAAAAATTTTGAGAAGGGATTTCTGCGACGCCTCTTTTTTTTTGTTTTCATTTCACTCTTCATTTTGTCTGATTCATACCAAAGCTTGAAGTACACTCCCCTTTAATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTAGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGGATTCATCCATTTTATCCAGAACTTCCAAACCTAAATTTATTAGAAATTGCTACATACATTTTACTATCAGTTTTCTACACACTTTGACCAACAATACGAATCTAAAAATAACACCTTTTGAAATAGGGATTTTTTTTTGAACATTATAAATTGATTCAGCTTGTCTAGTTACTAAGCGTTATACTGAACTTTGGTAAATAATTATTGCACCTTGAAAATAACTAGATGATATGATCTCTTCAACAGGTACTCTTGTCTTGCTAATATATTTTTGATCTTCCGAAAATTTAATTAGAAAACAGTCTAGTATTTTTGATCTACGGAAGATTGAACAAAGAAATCATAAACAGTTCAAGTTTTTTATTGACTTTCGCTACTGAATCCAATTTCTAACAGTTTTCAACGAACTTTCAACAGATTTTTTTCCGGTTCCTCTATCTTTCGTTGGTTTCCCAACAAAAATTCTCATTAGAAGTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTCCGCTTTCTCTTTGCCCGCG</canonical>
            <polymorphic>TGTATGAACACCTACCGACCCACTTTCCCATAGGGTGAGATCGGTTTAGTGCGTCACCTCAATCAATAACCATAATTATGTCATTACTTTGTGCAATTGAACAGCAGTAAAAATTTTGAGAAGGGATTTCTGCGACGCCTCTTTTTTTTTGTTTTCATTTCACTCTTCATTTTGTCTGATTCATACCAAAGCTTGAAGTACACTCCCCTTTAATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTAGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGGATTCATCCATTTTATCCAGAACTTCCAAACCTAAATTTATTAGAAATTGCTACATACATTTTACTATCAGTTTTCTACACACTTTGACCAACAATACGAATCTAAAAATAACACCTTTTGAAATAGGGAWTTTTTTTTGAACATTATAAATTGATTCAGCTTGTCTAGTTACTAAGCGTTATACTGAACTTTGGTAAATAATTATTGCACCTTGAAAATAACTAGATGATATGATCTCTTCAACAGGTACTCTTGTCTTGCTAATATATTTTTGATCTTCCGAAAATTTAATTAGAAAACAGTCTAGTATTTTTGATCTACGGAAGATTGAACAAAGAAATCATAAACAGTTCAAGTTTTTTATTGACTTTCGCTACTGAATCCAATTTCTAACAGTTTTCAACGAACTTTCAACAGATTTTTTTCCGGTTCCTCTATCTTTCGTTGGTTTCCCAACAAAAATTCTCATTAGAAGTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTCCGCTTTCTCTTTGCCCGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTACACACTTTGACCAACAATA</pcr_primer_p1>
		<pcr_primer_p2>CCGTAGATCAAAAATACTAGACTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTACACACTTTGACCAACAATACGAATCTAAAAATAACACCTTTTGAAATAGGGATTTTTTTTTGAACATTATAAATTGATTCAGCTTGTCTAGTTACTAAGCGTTATACTGAACTTTGGTAAATAATTATTGCACCTTGAAAATAACTAGATGATATGATCTCTTCAACAGGTACTCTTGTCTTGCTAATATATTTTTGATCTTCCGAAAATTTAATTAGAAAACAGTCTAGTATTTTTGATCTACGG</canonical_amplicon>
		<polymorphic_amplicon>TCTACACACTTTGACCAACAATACGAATCTAAAAATAACACCTTTTGAAATAGGGAWTTTTTTTTGAACATTATAAATTGATTCAGCTTGTCTAGTTACTAAGCGTTATACTGAACTTTGGTAAATAATTATTGCACCTTGAAAATAACTAGATGATATGATCTCTTCAACAGGTACTCTTGTCTTGCTAATATATTTTTGATCTTCCGAAAATTTAATTAGAAAACAGTCTAGTATTTTTGATCTACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36155</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>205396</contig_pos>
        <strand></strand>
        <context>ATTATAAATT[G/C]ATTCAGCTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TAAAAATAACACCTTTTGAAATAGGGATTTTTTTTTGAACATTATAAATT</left_flank>
        <right_flank>ATTCAGCTTGTCTAGTTACTAAGCGTTATACTGAACTTTGGTAAATAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCCCATAGGGTGAGATCGGTTTAGTGCGTCACCTCAATCAATAACCATAATTATGTCATTACTTTGTGCAATTGAACAGCAGTAAAAATTTTGAGAAGGGATTTCTGCGACGCCTCTTTTTTTTTGTTTTCATTTCACTCTTCATTTTGTCTGATTCATACCAAAGCTTGAAGTACACTCCCCTTTAATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTAGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGGATTCATCCATTTTATCCAGAACTTCCAAACCTAAATTTATTAGAAATTGCTACATACATTTTACTATCAGTTTTCTACACACTTTGACCAACAATACGAATCTAAAAATAACACCTTTTGAAATAGGGATTTTTTTTTGAACATTATAAATTGATTCAGCTTGTCTAGTTACTAAGCGTTATACTGAACTTTGGTAAATAATTATTGCACCTTGAAAATAACTAGATGATATGATCTCTTCAACAGGTACTCTTGTCTTGCTAATATATTTTTGATCTTCCGAAAATTTAATTAGAAAACAGTCTAGTATTTTTGATCTACGGAAGATTGAACAAAGAAATCATAAACAGTTCAAGTTTTTTATTGACTTTCGCTACTGAATCCAATTTCTAACAGTTTTCAACGAACTTTCAACAGATTTTTTTCCGGTTCCTCTATCTTTCGTTGGTTTCCCAACAAAAATTCTCATTAGAAGTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCG</canonical>
            <polymorphic>TTTCCCATAGGGTGAGATCGGTTTAGTGCGTCACCTCAATCAATAACCATAATTATGTCATTACTTTGTGCAATTGAACAGCAGTAAAAATTTTGAGAAGGGATTTCTGCGACGCCTCTTTTTTTTTGTTTTCATTTCACTCTTCATTTTGTCTGATTCATACCAAAGCTTGAAGTACACTCCCCTTTAATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTAGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGGATTCATCCATTTTATCCAGAACTTCCAAACCTAAATTTATTAGAAATTGCTACATACATTTTACTATCAGTTTTCTACACACTTTGACCAACAATACGAATCTAAAAATAACACCTTTTGAAATAGGGATTTTTTTTTGAACATTATAAATTSATTCAGCTTGTCTAGTTACTAAGCGTTATACTGAACTTTGGTAAATAATTATTGCACCTTGAAAATAACTAGATGATATGATCTCTTCAACAGGTACTCTTGTCTTGCTAATATATTTTTGATCTTCCGAAAATTTAATTAGAAAACAGTCTAGTATTTTTGATCTACGGAAGATTGAACAAAGAAATCATAAACAGTTCAAGTTTTTTATTGACTTTCGCTACTGAATCCAATTTCTAACAGTTTTCAACGAACTTTCAACAGATTTTTTTCCGGTTCCTCTATCTTTCGTTGGTTTCCCAACAAAAATTCTCATTAGAAGTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>274 226 155 106 98 86 55</canonical_bands>
                <polymorphic_bands>281 274 155 106 98 86</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>274 226 155 106 98 86 55</canonical_bands>
                <polymorphic_bands>281 274 155 106 98 86</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTGACCAACAATACGAATCTA</pcr_primer_p1>
		<pcr_primer_p2>CAATCTTCCGTAGATCAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTTGACCAACAATACGAATCTAAAAATAACACCTTTTGAAATAGGGATTTTTTTTTGAACATTATAAATTGATTCAGCTTGTCTAGTTACTAAGCGTTATACTGAACTTTGGTAAATAATTATTGCACCTTGAAAATAACTAGATGATATGATCTCTTCAACAGGTACTCTTGTCTTGCTAATATATTTTTGATCTTCCGAAAATTTAATTAGAAAACAGTCTAGTATTTTTGATCTACGGAAGATTG</canonical_amplicon>
		<polymorphic_amplicon>CTTTGACCAACAATACGAATCTAAAAATAACACCTTTTGAAATAGGGATTTTTTTTTGAACATTATAAATTSATTCAGCTTGTCTAGTTACTAAGCGTTATACTGAACTTTGGTAAATAATTATTGCACCTTGAAAATAACTAGATGATATGATCTCTTCAACAGGTACTCTTGTCTTGCTAATATATTTTTGATCTTCCGAAAATTTAATTAGAAAACAGTCTAGTATTTTTGATCTACGGAAGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36156</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>205432</contig_pos>
        <strand></strand>
        <context>TTATACTGAA[C/T]TTTGGTAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAACATTATAAATTGATTCAGCTTGTCTAGTTACTAAGCGTTATACTGAA</left_flank>
        <right_flank>TTTGGTAAATAATTATTGCACCTTGAAAATAACTAGATGATATGATCTCT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATCAATAACCATAATTATGTCATTACTTTGTGCAATTGAACAGCAGTAAAAATTTTGAGAAGGGATTTCTGCGACGCCTCTTTTTTTTTGTTTTCATTTCACTCTTCATTTTGTCTGATTCATACCAAAGCTTGAAGTACACTCCCCTTTAATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTAGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGGATTCATCCATTTTATCCAGAACTTCCAAACCTAAATTTATTAGAAATTGCTACATACATTTTACTATCAGTTTTCTACACACTTTGACCAACAATACGAATCTAAAAATAACACCTTTTGAAATAGGGATTTTTTTTTGAACATTATAAATTGATTCAGCTTGTCTAGTTACTAAGCGTTATACTGAACTTTGGTAAATAATTATTGCACCTTGAAAATAACTAGATGATATGATCTCTTCAACAGGTACTCTTGTCTTGCTAATATATTTTTGATCTTCCGAAAATTTAATTAGAAAACAGTCTAGTATTTTTGATCTACGGAAGATTGAACAAAGAAATCATAAACAGTTCAAGTTTTTTATTGACTTTCGCTACTGAATCCAATTTCTAACAGTTTTCAACGAACTTTCAACAGATTTTTTTCCGGTTCCTCTATCTTTCGTTGGTTTCCCAACAAAAATTCTCATTAGAAGTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCGCCTTCACAAGTTCAATTCGAG</canonical>
            <polymorphic>CAATCAATAACCATAATTATGTCATTACTTTGTGCAATTGAACAGCAGTAAAAATTTTGAGAAGGGATTTCTGCGACGCCTCTTTTTTTTTGTTTTCATTTCACTCTTCATTTTGTCTGATTCATACCAAAGCTTGAAGTACACTCCCCTTTAATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTAGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGGATTCATCCATTTTATCCAGAACTTCCAAACCTAAATTTATTAGAAATTGCTACATACATTTTACTATCAGTTTTCTACACACTTTGACCAACAATACGAATCTAAAAATAACACCTTTTGAAATAGGGATTTTTTTTTGAACATTATAAATTGATTCAGCTTGTCTAGTTACTAAGCGTTATACTGAAYTTTGGTAAATAATTATTGCACCTTGAAAATAACTAGATGATATGATCTCTTCAACAGGTACTCTTGTCTTGCTAATATATTTTTGATCTTCCGAAAATTTAATTAGAAAACAGTCTAGTATTTTTGATCTACGGAAGATTGAACAAAGAAATCATAAACAGTTCAAGTTTTTTATTGACTTTCGCTACTGAATCCAATTTCTAACAGTTTTCAACGAACTTTCAACAGATTTTTTTCCGGTTCCTCTATCTTTCGTTGGTTTCCCAACAAAAATTCTCATTAGAAGTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCGCCTTCACAAGTTCAATTCGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTGACCAACAATACGAATCTA</pcr_primer_p1>
		<pcr_primer_p2>CAATCTTCCGTAGATCAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTTGACCAACAATACGAATCTAAAAATAACACCTTTTGAAATAGGGATTTTTTTTTGAACATTATAAATTGATTCAGCTTGTCTAGTTACTAAGCGTTATACTGAACTTTGGTAAATAATTATTGCACCTTGAAAATAACTAGATGATATGATCTCTTCAACAGGTACTCTTGTCTTGCTAATATATTTTTGATCTTCCGAAAATTTAATTAGAAAACAGTCTAGTATTTTTGATCTACGGAAGATTG</canonical_amplicon>
		<polymorphic_amplicon>CTTTGACCAACAATACGAATCTAAAAATAACACCTTTTGAAATAGGGATTTTTTTTTGAACATTATAAATTGATTCAGCTTGTCTAGTTACTAAGCGTTATACTGAAYTTTGGTAAATAATTATTGCACCTTGAAAATAACTAGATGATATGATCTCTTCAACAGGTACTCTTGTCTTGCTAATATATTTTTGATCTTCCGAAAATTTAATTAGAAAACAGTCTAGTATTTTTGATCTACGGAAGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36157</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>205451</contig_pos>
        <strand></strand>
        <context>ATAATTATTG[C/G]AMCTTGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGCTTGTCTAGTTACTAAGCGTTATACTGAACTTTGGTAAATAATTATTG</left_flank>
        <right_flank>ACCTTGAAAATAACTAGATGATATGATCTCTTCAACAGGTACTCTTGTCT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTCATTACTTTGTGCAATTGAACAGCAGTAAAAATTTTGAGAAGGGATTTCTGCGACGCCTCTTTTTTTTTGTTTTCATTTCACTCTTCATTTTGTCTGATTCATACCAAAGCTTGAAGTACACTCCCCTTTAATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTAGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGGATTCATCCATTTTATCCAGAACTTCCAAACCTAAATTTATTAGAAATTGCTACATACATTTTACTATCAGTTTTCTACACACTTTGACCAACAATACGAATCTAAAAATAACACCTTTTGAAATAGGGATTTTTTTTTGAACATTATAAATTGATTCAGCTTGTCTAGTTACTAAGCGTTATACTGAACTTTGGTAAATAATTATTGCACCTTGAAAATAACTAGATGATATGATCTCTTCAACAGGTACTCTTGTCTTGCTAATATATTTTTGATCTTCCGAAAATTTAATTAGAAAACAGTCTAGTATTTTTGATCTACGGAAGATTGAACAAAGAAATCATAAACAGTTCAAGTTTTTTATTGACTTTCGCTACTGAATCCAATTTCTAACAGTTTTCAACGAACTTTCAACAGATTTTTTTCCGGTTCCTCTATCTTTCGTTGGTTTCCCAACAAAAATTCTCATTAGAAGTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCGCCTTCACAAGTTCAATTCGAGGGGCATCTTTGAACGGAAT</canonical>
            <polymorphic>TGTCATTACTTTGTGCAATTGAACAGCAGTAAAAATTTTGAGAAGGGATTTCTGCGACGCCTCTTTTTTTTTGTTTTCATTTCACTCTTCATTTTGTCTGATTCATACCAAAGCTTGAAGTACACTCCCCTTTAATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTAGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGGATTCATCCATTTTATCCAGAACTTCCAAACCTAAATTTATTAGAAATTGCTACATACATTTTACTATCAGTTTTCTACACACTTTGACCAACAATACGAATCTAAAAATAACACCTTTTGAAATAGGGATTTTTTTTTGAACATTATAAATTGATTCAGCTTGTCTAGTTACTAAGCGTTATACTGAACTTTGGTAAATAATTATTGSACCTTGAAAATAACTAGATGATATGATCTCTTCAACAGGTACTCTTGTCTTGCTAATATATTTTTGATCTTCCGAAAATTTAATTAGAAAACAGTCTAGTATTTTTGATCTACGGAAGATTGAACAAAGAAATCATAAACAGTTCAAGTTTTTTATTGACTTTCGCTACTGAATCCAATTTCTAACAGTTTTCAACGAACTTTCAACAGATTTTTTTCCGGTTCCTCTATCTTTCGTTGGTTTCCCAACAAAAATTCTCATTAGAAGTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCGCCTTCACAAGTTCAATTCGAGGGGCATCTTTGAACGGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>484 321 109 71 15</canonical_bands>
                <polymorphic_bands>805 109 71 15</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>275 132 115 96 69 69 57 40 34 32 23 19 17 15 5 2</canonical_bands>
                <polymorphic_bands>371 132 115 69 69 57 40 34 32 23 19 17 15 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTGACCAACAATACGAATCTA</pcr_primer_p1>
		<pcr_primer_p2>CAATCTTCCGTAGATCAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTTGACCAACAATACGAATCTAAAAATAACACCTTTTGAAATAGGGATTTTTTTTTGAACATTATAAATTGATTCAGCTTGTCTAGTTACTAAGCGTTATACTGAACTTTGGTAAATAATTATTGCACCTTGAAAATAACTAGATGATATGATCTCTTCAACAGGTACTCTTGTCTTGCTAATATATTTTTGATCTTCCGAAAATTTAATTAGAAAACAGTCTAGTATTTTTGATCTACGGAAGATTG</canonical_amplicon>
		<polymorphic_amplicon>CTTTGACCAACAATACGAATCTAAAAATAACACCTTTTGAAATAGGGATTTTTTTTTGAACATTATAAATTGATTCAGCTTGTCTAGTTACTAAGCGTTATACTGAACTTTGGTAAATAATTATTGSACCTTGAAAATAACTAGATGATATGATCTCTTCAACAGGTACTCTTGTCTTGCTAATATATTTTTGATCTTCCGAAAATTTAATTAGAAAACAGTCTAGTATTTTTGATCTACGGAAGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36158</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>205453</contig_pos>
        <strand></strand>
        <context>AATTATTGSA[C/A]CTTGAAAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CTTGTCTAGTTACTAAGCGTTATACTGAACTTTGGTAAATAATTATTGCA</left_flank>
        <right_flank>CTTGAAAATAACTAGATGATATGATCTCTTCAACAGGTACTCTTGTCTTG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATTACTTTGTGCAATTGAACAGCAGTAAAAATTTTGAGAAGGGATTTCTGCGACGCCTCTTTTTTTTTGTTTTCATTTCACTCTTCATTTTGTCTGATTCATACCAAAGCTTGAAGTACACTCCCCTTTAATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTAGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGGATTCATCCATTTTATCCAGAACTTCCAAACCTAAATTTATTAGAAATTGCTACATACATTTTACTATCAGTTTTCTACACACTTTGACCAACAATACGAATCTAAAAATAACACCTTTTGAAATAGGGATTTTTTTTTGAACATTATAAATTGATTCAGCTTGTCTAGTTACTAAGCGTTATACTGAACTTTGGTAAATAATTATTGCACCTTGAAAATAACTAGATGATATGATCTCTTCAACAGGTACTCTTGTCTTGCTAATATATTTTTGATCTTCCGAAAATTTAATTAGAAAACAGTCTAGTATTTTTGATCTACGGAAGATTGAACAAAGAAATCATAAACAGTTCAAGTTTTTTATTGACTTTCGCTACTGAATCCAATTTCTAACAGTTTTCAACGAACTTTCAACAGATTTTTTTCCGGTTCCTCTATCTTTCGTTGGTTTCCCAACAAAAATTCTCATTAGAAGTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCGCCTTCACAAGTTCAATTCGAGGGGCATCTTTGAACGGAATTT</canonical>
            <polymorphic>TCATTACTTTGTGCAATTGAACAGCAGTAAAAATTTTGAGAAGGGATTTCTGCGACGCCTCTTTTTTTTTGTTTTCATTTCACTCTTCATTTTGTCTGATTCATACCAAAGCTTGAAGTACACTCCCCTTTAATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTAGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGGATTCATCCATTTTATCCAGAACTTCCAAACCTAAATTTATTAGAAATTGCTACATACATTTTACTATCAGTTTTCTACACACTTTGACCAACAATACGAATCTAAAAATAACACCTTTTGAAATAGGGATTTTTTTTTGAACATTATAAATTGATTCAGCTTGTCTAGTTACTAAGCGTTATACTGAACTTTGGTAAATAATTATTGCAMCTTGAAAATAACTAGATGATATGATCTCTTCAACAGGTACTCTTGTCTTGCTAATATATTTTTGATCTTCCGAAAATTTAATTAGAAAACAGTCTAGTATTTTTGATCTACGGAAGATTGAACAAAGAAATCATAAACAGTTCAAGTTTTTTATTGACTTTCGCTACTGAATCCAATTTCTAACAGTTTTCAACGAACTTTCAACAGATTTTTTTCCGGTTCCTCTATCTTTCGTTGGTTTCCCAACAAAAATTCTCATTAGAAGTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCGCCTTCACAAGTTCAATTCGAGGGGCATCTTTGAACGGAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>275 132 115 96 69 69 57 40 36 32 23 19 17 13 5 2</canonical_bands>
                <polymorphic_bands>371 132 115 69 69 57 40 36 32 23 19 17 13 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTGACCAACAATACGAATCTA</pcr_primer_p1>
		<pcr_primer_p2>CAATCTTCCGTAGATCAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTTGACCAACAATACGAATCTAAAAATAACACCTTTTGAAATAGGGATTTTTTTTTGAACATTATAAATTGATTCAGCTTGTCTAGTTACTAAGCGTTATACTGAACTTTGGTAAATAATTATTGCACCTTGAAAATAACTAGATGATATGATCTCTTCAACAGGTACTCTTGTCTTGCTAATATATTTTTGATCTTCCGAAAATTTAATTAGAAAACAGTCTAGTATTTTTGATCTACGGAAGATTG</canonical_amplicon>
		<polymorphic_amplicon>CTTTGACCAACAATACGAATCTAAAAATAACACCTTTTGAAATAGGGATTTTTTTTTGAACATTATAAATTGATTCAGCTTGTCTAGTTACTAAGCGTTATACTGAACTTTGGTAAATAATTATTGCAMCTTGAAAATAACTAGATGATATGATCTCTTCAACAGGTACTCTTGTCTTGCTAATATATTTTTGATCTTCCGAAAATTTAATTAGAAAACAGTCTAGTATTTTTGATCTACGGAAGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36159</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>205472</contig_pos>
        <strand></strand>
        <context>TAACTAGATG[A/T]TATGATCTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTATACTGAACTTTGGTAAATAATTATTGCACCTTGAAAATAACTAGATG</left_flank>
        <right_flank>TATGATCTCTTCAACAGGTACTCTTGTCTTGCTAATATATTTTTGATCTT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAGCAGTAAAAATTTTGAGAAGGGATTTCTGCGACGCCTCTTTTTTTTTGTTTTCATTTCACTCTTCATTTTGTCTGATTCATACCAAAGCTTGAAGTACACTCCCCTTTAATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTAGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGGATTCATCCATTTTATCCAGAACTTCCAAACCTAAATTTATTAGAAATTGCTACATACATTTTACTATCAGTTTTCTACACACTTTGACCAACAATACGAATCTAAAAATAACACCTTTTGAAATAGGGATTTTTTTTTGAACATTATAAATTGATTCAGCTTGTCTAGTTACTAAGCGTTATACTGAACTTTGGTAAATAATTATTGCACCTTGAAAATAACTAGATGATATGATCTCTTCAACAGGTACTCTTGTCTTGCTAATATATTTTTGATCTTCCGAAAATTTAATTAGAAAACAGTCTAGTATTTTTGATCTACGGAAGATTGAACAAAGAAATCATAAACAGTTCAAGTTTTTTATTGACTTTCGCTACTGAATCCAATTTCTAACAGTTTTCAACGAACTTTCAACAGATTTTTTTCCGGTTCCTCTATCTTTCGTTGGTTTCCCAACAAAAATTCTCATTAGAAGTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCGCCTTCACAAGTTCAATTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTC</canonical>
            <polymorphic>AACAGCAGTAAAAATTTTGAGAAGGGATTTCTGCGACGCCTCTTTTTTTTTGTTTTCATTTCACTCTTCATTTTGTCTGATTCATACCAAAGCTTGAAGTACACTCCCCTTTAATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTAGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGGATTCATCCATTTTATCCAGAACTTCCAAACCTAAATTTATTAGAAATTGCTACATACATTTTACTATCAGTTTTCTACACACTTTGACCAACAATACGAATCTAAAAATAACACCTTTTGAAATAGGGATTTTTTTTTGAACATTATAAATTGATTCAGCTTGTCTAGTTACTAAGCGTTATACTGAACTTTGGTAAATAATTATTGCACCTTGAAAATAACTAGATGWTATGATCTCTTCAACAGGTACTCTTGTCTTGCTAATATATTTTTGATCTTCCGAAAATTTAATTAGAAAACAGTCTAGTATTTTTGATCTACGGAAGATTGAACAAAGAAATCATAAACAGTTCAAGTTTTTTATTGACTTTCGCTACTGAATCCAATTTCTAACAGTTTTCAACGAACTTTCAACAGATTTTTTTCCGGTTCCTCTATCTTTCGTTGGTTTCCCAACAAAAATTCTCATTAGAAGTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCGCCTTCACAAGTTCAATTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTGACCAACAATACGAATCTA</pcr_primer_p1>
		<pcr_primer_p2>CAATCTTCCGTAGATCAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTTGACCAACAATACGAATCTAAAAATAACACCTTTTGAAATAGGGATTTTTTTTTGAACATTATAAATTGATTCAGCTTGTCTAGTTACTAAGCGTTATACTGAACTTTGGTAAATAATTATTGCACCTTGAAAATAACTAGATGATATGATCTCTTCAACAGGTACTCTTGTCTTGCTAATATATTTTTGATCTTCCGAAAATTTAATTAGAAAACAGTCTAGTATTTTTGATCTACGGAAGATTG</canonical_amplicon>
		<polymorphic_amplicon>CTTTGACCAACAATACGAATCTAAAAATAACACCTTTTGAAATAGGGATTTTTTTTTGAACATTATAAATTGATTCAGCTTGTCTAGTTACTAAGCGTTATACTGAACTTTGGTAAATAATTATTGCACCTTGAAAATAACTAGATGWTATGATCTCTTCAACAGGTACTCTTGTCTTGCTAATATATTTTTGATCTTCCGAAAATTTAATTAGAAAACAGTCTAGTATTTTTGATCTACGGAAGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36160</snp_id>
        <super_contig>c010701218.Contig1</super_contig>
        <contig_pos>205492</contig_pos>
        <strand></strand>
        <context>TTCAACAGGT[A/T]CTCTTGTCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAATTATTGCACCTTGAAAATAACTAGATGATATGATCTCTTCAACAGGT</left_flank>
        <right_flank>CTCTTGTCTTGCTAATATATTTTTGATCTTCCGAAAATTTAATTAGAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGGGATTTCTGCGACGCCTCTTTTTTTTTGTTTTCATTTCACTCTTCATTTTGTCTGATTCATACCAAAGCTTGAAGTACACTCCCCTTTAATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTAGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGGATTCATCCATTTTATCCAGAACTTCCAAACCTAAATTTATTAGAAATTGCTACATACATTTTACTATCAGTTTTCTACACACTTTGACCAACAATACGAATCTAAAAATAACACCTTTTGAAATAGGGATTTTTTTTTGAACATTATAAATTGATTCAGCTTGTCTAGTTACTAAGCGTTATACTGAACTTTGGTAAATAATTATTGCACCTTGAAAATAACTAGATGATATGATCTCTTCAACAGGTACTCTTGTCTTGCTAATATATTTTTGATCTTCCGAAAATTTAATTAGAAAACAGTCTAGTATTTTTGATCTACGGAAGATTGAACAAAGAAATCATAAACAGTTCAAGTTTTTTATTGACTTTCGCTACTGAATCCAATTTCTAACAGTTTTCAACGAACTTTCAACAGATTTTTTTCCGGTTCCTCTATCTTTCGTTGGTTTCCCAACAAAAATTCTCATTAGAAGTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCGCCTTCACAAGTTCAATTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCTCCCCACCTTTAAGA</canonical>
            <polymorphic>GAAGGGATTTCTGCGACGCCTCTTTTTTTTTGTTTTCATTTCACTCTTCATTTTGTCTGATTCATACCAAAGCTTGAAGTACACTCCCCTTTAATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTAGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGGATTCATCCATTTTATCCAGAACTTCCAAACCTAAATTTATTAGAAATTGCTACATACATTTTACTATCAGTTTTCTACACACTTTGACCAACAATACGAATCTAAAAATAACACCTTTTGAAATAGGGATTTTTTTTTGAACATTATAAATTGATTCAGCTTGTCTAGTTACTAAGCGTTATACTGAACTTTGGTAAATAATTATTGCACCTTGAAAATAACTAGATGATATGATCTCTTCAACAGGTWCTCTTGTCTTGCTAATATATTTTTGATCTTCCGAAAATTTAATTAGAAAACAGTCTAGTATTTTTGATCTACGGAAGATTGAACAAAGAAATCATAAACAGTTCAAGTTTTTTATTGACTTTCGCTACTGAATCCAATTTCTAACAGTTTTCAACGAACTTTCAACAGATTTTTTTCCGGTTCCTCTATCTTTCGTTGGTTTCCCAACAAAAATTCTCATTAGAAGTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTCCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCGCCTTCACAAGTTCAATTCGAGGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCTCCCCACCTTTAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>419 299 178 80 24</canonical_bands>
                <polymorphic_bands>718 178 80 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTGACCAACAATACGAATCTA</pcr_primer_p1>
		<pcr_primer_p2>CAATCTTCCGTAGATCAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTTGACCAACAATACGAATCTAAAAATAACACCTTTTGAAATAGGGATTTTTTTTTGAACATTATAAATTGATTCAGCTTGTCTAGTTACTAAGCGTTATACTGAACTTTGGTAAATAATTATTGCACCTTGAAAATAACTAGATGATATGATCTCTTCAACAGGTACTCTTGTCTTGCTAATATATTTTTGATCTTCCGAAAATTTAATTAGAAAACAGTCTAGTATTTTTGATCTACGGAAGATTG</canonical_amplicon>
		<polymorphic_amplicon>CTTTGACCAACAATACGAATCTAAAAATAACACCTTTTGAAATAGGGATTTTTTTTTGAACATTATAAATTGATTCAGCTTGTCTAGTTACTAAGCGTTATACTGAACTTTGGTAAATAATTATTGCACCTTGAAAATAACTAGATGATATGATCTCTTCAACAGGTWCTCTTGTCTTGCTAATATATTTTTGATCTTCCGAAAATTTAATTAGAAAACAGTCTAGTATTTTTGATCTACGGAAGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36161</snp_id>
        <super_contig>c010701269.Contig1</super_contig>
        <contig_pos>30148</contig_pos>
        <strand></strand>
        <context>ATTTACACTG[G/A]AAAAAGGACA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GCCAATAAAACCGCTACGAAAAACCCAAACATCTGTAAATATTTACACTG</left_flank>
        <right_flank>AAAAAGGACAAAAAACTCGTATTTGCTCTTATTTTCAATAAGGAAAAATA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAATTTCTAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCGAAATTTCCGAACTTTCTGAATTTCAGAATTTCAAATTTTCAGAATTCAGAATTCCTGAATTTTTGAATTTCAGAATTTCCAAAATTTGAGAACTTCTGAATTTTTGGAATTTTCAAAATTTCAGAATTTCACAAACTCGGAATTTCGAAACTTAAGAATTTCAGAATATCAGGATTTCAGATTTTCAGAGTTTCGGGATTTCAGGTTTTCAGAATTTTCAGAATTTTCTGAATTCTCTGAATTTCTCAATTTCTCAATTTCAGAATTCTCGAAATTTTAAATTCTTTAGATTTTTTTGTAATTTCAAAATTTCAAAATCCAGTAAAAAACTTCATCAAAAAAAATTCAGAAGAAAAAAAACTGCAATTTCAGTTTTATGTTTTGAATTTGGCGCCAATAAAACCGCTACGAAAAACCCAAACATCTGTAAATATTTACACTGGAAAAAGGACAAAAAACTCGTATTTGCTCTTATTTTCAATAAGGAAAAATATTTGAGATTTTTGGGACATTTTGGGAATACATTTTTGTGTAGGAAGGAATTTTTTGACAATTTTTTCAATAAAATTTTCATGAAAACTTTGTCTAAAAATTCTGAAAAACGTACCTCTGACATAAATTGTTCGACCGGCCAAAAAATGAGCTCCAGAACTTTCGGGAATCGCCGTTTCTGAACCTGCCAAAAAGAATTGCACATCATTGATGGTTAGACCTCGGATTCGGAGATAAGCTGAAATTTTTTTTCAGATTTTTATTTCTTTCAGATTTTTTTTTTGAAAAATTGGTCCAAAGTTAACAGAATGATGGAATTTGGAGTTTTCGGAAAACTTGAGATTTCCGAAAAAATACCGTAAGCACTCTAATAGAACGCCAACCGGACCGTCCACTTTGAGCCTATATATCTCGCCTCTTTTGAAAGATATCAAAAAAATGTCAACTGATA</canonical>
            <polymorphic>CTGAATTTCTAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCAGAATTTCGAAATTTCCGAACTTTCTGAATTTCAGAATTTCAAATTTTCAGAATTCAGAATTCCTGAATTTTTGAATTTCAGAATTTCCAAAATTTGAGAACTTCTGAATTTTTGGAATTTTCAAAATTTCAGAATTTCACAAACTCGGAATTTCGAAACTTAAGAATTTCAGAATATCAGGATTTCAGATTTTCAGAGTTTCGGGATTTCAGGTTTTCAGAATTTTCAGAATTTTCTGAATTCTCTGAATTTCTCAATTTCTCAATTTCAGAATTCTCGAAATTTTAAATTCTTTAGATTTTTTTGTAATTTCAAAATTTCAAAATCCAGTAAAAAACTTCATCAAAAAAAATTCAGAAGAAAAAAAACTGCAATTTCAGTTTTATGTTTTGAATTTGGCGCCAATAAAACCGCTACGAAAAACCCAAACATCTGTAAATATTTACACTGRAAAAAGGACAAAAAACTCGTATTTGCTCTTATTTTCAATAAGGAAAAATATTTGAGATTTTTGGGACATTTTGGGAATACATTTTTGTGTAGGAAGGAATTTTTTGACAATTTTTTCAATAAAATTTTCATGAAAACTTTGTCTAAAAATTCTGAAAAACGTACCTCTGACATAAATTGTTCGACCGGCCAAAAAATGAGCTCCAGAACTTTCGGGAATCGCCGTTTCTGAACCTGCCAAAAAGAATTGCACATCATTGATGGTTAGACCTCGGATTCGGAGATAAGCTGAAATTTTTTTTCAGATTTTTATTTCTTTCAGATTTTTTTTTTGAAAAATTGGTCCAAAGTTAACAGAATGATGGAATTTGGAGTTTTCGGAAAACTTGAGATTTCCGAAAAAATACCGTAAGCACTCTAATAGAACGCCAACCGGACCGTCCACTTTGAGCCTATATATCTCGCCTCTTTTGAAAGATATCAAAAAAATGTCAACTGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAAAATTTCAAAATCCAGTAA</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCCTTCCTACACAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTCAAAATTTCAAAATCCAGTAAAAAACTTCATCAAAAAAAATTCAGAAGAAAAAAAACTGCAATTTCAGTTTTATGTTTTGAATTTGGCGCCAATAAAACCGCTACGAAAAACCCAAACATCTGTAAATATTTACACTGGAAAAAGGACAAAAAACTCGTATTTGCTCTTATTTTCAATAAGGAAAAATATTTGAGATTTTTGGGACATTTTGGGAATACATTTTTGTGTAGGAAGGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTCAAAATTTCAAAATCCAGTAAAAAACTTCATCAAAAAAAATTCAGAAGAAAAAAAACTGCAATTTCAGTTTTATGTTTTGAATTTGGCGCCAATAAAACCGCTACGAAAAACCCAAACATCTGTAAATATTTACACTGRAAAAAGGACAAAAAACTCGTATTTGCTCTTATTTTCAATAAGGAAAAATATTTGAGATTTTTGGGACATTTTGGGAATACATTTTTGTGTAGGAAGGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36162</snp_id>
        <super_contig>c010701269.Contig1</super_contig>
        <contig_pos>30270</contig_pos>
        <strand></strand>
        <context>TTTTTCAATA[A/G]AATTTTCATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGGAATACATTTTTGTGTAGGAAGGAATTTTTTGACAATTTTTTCAATA</left_flank>
        <right_flank>AATTTTCATGAAAACTTTGTCTAAAAATTCTGAAAAACGTACCTCTGACA</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTCAGAATTTCCAAAATTTGAGAACTTCTGAATTTTTGGAATTTTCAAAATTTCAGAATTTCACAAACTCGGAATTTCGAAACTTAAGAATTTCAGAATATCAGGATTTCAGATTTTCAGAGTTTCGGGATTTCAGGTTTTCAGAATTTTCAGAATTTTCTGAATTCTCTGAATTTCTCAATTTCTCAATTTCAGAATTCTCGAAATTTTAAATTCTTTAGATTTTTTTGTAATTTCAAAATTTCAAAATCCAGTAAAAAACTTCATCAAAAAAAATTCAGAAGAAAAAAAACTGCAATTTCAGTTTTATGTTTTGAATTTGGCGCCAATAAAACCGCTACGAAAAACCCAAACATCTGTAAATATTTACACTGGAAAAAGGACAAAAAACTCGTATTTGCTCTTATTTTCAATAAGGAAAAATATTTGAGATTTTTGGGACATTTTGGGAATACATTTTTGTGTAGGAAGGAATTTTTTGACAATTTTTTCAATAAAATTTTCATGAAAACTTTGTCTAAAAATTCTGAAAAACGTACCTCTGACATAAATTGTTCGACCGGCCAAAAAATGAGCTCCAGAACTTTCGGGAATCGCCGTTTCTGAACCTGCCAAAAAGAATTGCACATCATTGATGGTTAGACCTCGGATTCGGAGATAAGCTGAAATTTTTTTTCAGATTTTTATTTCTTTCAGATTTTTTTTTTGAAAAATTGGTCCAAAGTTAACAGAATGATGGAATTTGGAGTTTTCGGAAAACTTGAGATTTCCGAAAAAATACCGTAAGCACTCTAATAGAACGCCAACCGGACCGTCCACTTTGAGCCTATATATCTCGCCTCTTTTGAAAGATATCAAAAAAATGTCAACTGATAAATTGTTTATCATGATATCAGAAACATTTTATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGAAACATGGGCCCGAATTTGACGATTCGGGTGGCGTTTTATAAGCGTGTTTAC</canonical>
            <polymorphic>AATTTCAGAATTTCCAAAATTTGAGAACTTCTGAATTTTTGGAATTTTCAAAATTTCAGAATTTCACAAACTCGGAATTTCGAAACTTAAGAATTTCAGAATATCAGGATTTCAGATTTTCAGAGTTTCGGGATTTCAGGTTTTCAGAATTTTCAGAATTTTCTGAATTCTCTGAATTTCTCAATTTCTCAATTTCAGAATTCTCGAAATTTTAAATTCTTTAGATTTTTTTGTAATTTCAAAATTTCAAAATCCAGTAAAAAACTTCATCAAAAAAAATTCAGAAGAAAAAAAACTGCAATTTCAGTTTTATGTTTTGAATTTGGCGCCAATAAAACCGCTACGAAAAACCCAAACATCTGTAAATATTTACACTGGAAAAAGGACAAAAAACTCGTATTTGCTCTTATTTTCAATAAGGAAAAATATTTGAGATTTTTGGGACATTTTGGGAATACATTTTTGTGTAGGAAGGAATTTTTTGACAATTTTTTCAATARAATTTTCATGAAAACTTTGTCTAAAAATTCTGAAAAACGTACCTCTGACATAAATTGTTCGACCGGCCAAAAAATGAGCTCCAGAACTTTCGGGAATCGCCGTTTCTGAACCTGCCAAAAAGAATTGCACATCATTGATGGTTAGACCTCGGATTCGGAGATAAGCTGAAATTTTTTTTCAGATTTTTATTTCTTTCAGATTTTTTTTTTGAAAAATTGGTCCAAAGTTAACAGAATGATGGAATTTGGAGTTTTCGGAAAACTTGAGATTTCCGAAAAAATACCGTAAGCACTCTAATAGAACGCCAACCGGACCGTCCACTTTGAGCCTATATATCTCGCCTCTTTTGAAAGATATCAAAAAAATGTCAACTGATAAATTGTTTATCATGATATCAGAAACATTTTATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGAAACATGGGCCCGAATTTGACGATTCGGGTGGCGTTTTATAAGCGTGTTTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>219 156 144 73 56 42 39 35 28 25 25 24 16 16 16 9 9 9 9 9 9 9 8 8 7</canonical_bands>
                <polymorphic_bands>219 156 144 73 56 50 42 39 35 28 24 16 16 16 9 9 9 9 9 9 9 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATATTTGAGATTTTTGGGACAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTCAGCTTATCTCCGAATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATATTTGAGATTTTTGGGACATTTTGGGAATACATTTTTGTGTAGGAAGGAATTTTTTGACAATTTTTTCAATAAAATTTTCATGAAAACTTTGTCTAAAAATTCTGAAAAACGTACCTCTGACATAAATTGTTCGACCGGCCAAAAAATGAGCTCCAGAACTTTCGGGAATCGCCGTTTCTGAACCTGCCAAAAAGAATTGCACATCATTGATGGTTAGACCTCGGATTCGGAGATAAGCTGAAAT</canonical_amplicon>
		<polymorphic_amplicon>AATATTTGAGATTTTTGGGACATTTTGGGAATACATTTTTGTGTAGGAAGGAATTTTTTGACAATTTTTTCAATARAATTTTCATGAAAACTTTGTCTAAAAATTCTGAAAAACGTACCTCTGACATAAATTGTTCGACCGGCCAAAAAATGAGCTCCAGAACTTTCGGGAATCGCCGTTTCTGAACCTGCCAAAAAGAATTGCACATCATTGATGGTTAGACCTCGGATTCGGAGATAAGCTGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36163</snp_id>
        <super_contig>c010701269.Contig1</super_contig>
        <contig_pos>30310</contig_pos>
        <strand></strand>
        <context>CTGAAAAACG[T/C]ACCTCTGACA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTTCAATAAAATTTTCATGAAAACTTTGTCTAAAAATTCTGAAAAACG</left_flank>
        <right_flank>ACCTCTGACATAAATTGTTCGACCGGCCAAAAAATGAGCTCCAGAACTTT</right_flank>
        <qual_score>47</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAATTTTCAAAATTTCAGAATTTCACAAACTCGGAATTTCGAAACTTAAGAATTTCAGAATATCAGGATTTCAGATTTTCAGAGTTTCGGGATTTCAGGTTTTCAGAATTTTCAGAATTTTCTGAATTCTCTGAATTTCTCAATTTCTCAATTTCAGAATTCTCGAAATTTTAAATTCTTTAGATTTTTTTGTAATTTCAAAATTTCAAAATCCAGTAAAAAACTTCATCAAAAAAAATTCAGAAGAAAAAAAACTGCAATTTCAGTTTTATGTTTTGAATTTGGCGCCAATAAAACCGCTACGAAAAACCCAAACATCTGTAAATATTTACACTGGAAAAAGGACAAAAAACTCGTATTTGCTCTTATTTTCAATAAGGAAAAATATTTGAGATTTTTGGGACATTTTGGGAATACATTTTTGTGTAGGAAGGAATTTTTTGACAATTTTTTCAATAAAATTTTCATGAAAACTTTGTCTAAAAATTCTGAAAAACGTACCTCTGACATAAATTGTTCGACCGGCCAAAAAATGAGCTCCAGAACTTTCGGGAATCGCCGTTTCTGAACCTGCCAAAAAGAATTGCACATCATTGATGGTTAGACCTCGGATTCGGAGATAAGCTGAAATTTTTTTTCAGATTTTTATTTCTTTCAGATTTTTTTTTTGAAAAATTGGTCCAAAGTTAACAGAATGATGGAATTTGGAGTTTTCGGAAAACTTGAGATTTCCGAAAAAATACCGTAAGCACTCTAATAGAACGCCAACCGGACCGTCCACTTTGAGCCTATATATCTCGCCTCTTTTGAAAGATATCAAAAAAATGTCAACTGATAAATTGTTTATCATGATATCAGAAACATTTTATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGAAACATGGGCCCGAATTTGACGATTCGGGTGGCGTTTTATAAGCGTGTTTACGGCATGCGTCTCTGAACTTGGAAACTTCCAGTGACCGTAT</canonical>
            <polymorphic>GGAATTTTCAAAATTTCAGAATTTCACAAACTCGGAATTTCGAAACTTAAGAATTTCAGAATATCAGGATTTCAGATTTTCAGAGTTTCGGGATTTCAGGTTTTCAGAATTTTCAGAATTTTCTGAATTCTCTGAATTTCTCAATTTCTCAATTTCAGAATTCTCGAAATTTTAAATTCTTTAGATTTTTTTGTAATTTCAAAATTTCAAAATCCAGTAAAAAACTTCATCAAAAAAAATTCAGAAGAAAAAAAACTGCAATTTCAGTTTTATGTTTTGAATTTGGCGCCAATAAAACCGCTACGAAAAACCCAAACATCTGTAAATATTTACACTGGAAAAAGGACAAAAAACTCGTATTTGCTCTTATTTTCAATAAGGAAAAATATTTGAGATTTTTGGGACATTTTGGGAATACATTTTTGTGTAGGAAGGAATTTTTTGACAATTTTTTCAATAAAATTTTCATGAAAACTTTGTCTAAAAATTCTGAAAAACGYACCTCTGACATAAATTGTTCGACCGGCCAAAAAATGAGCTCCAGAACTTTCGGGAATCGCCGTTTCTGAACCTGCCAAAAAGAATTGCACATCATTGATGGTTAGACCTCGGATTCGGAGATAAGCTGAAATTTTTTTTCAGATTTTTATTTCTTTCAGATTTTTTTTTTGAAAAATTGGTCCAAAGTTAACAGAATGATGGAATTTGGAGTTTTCGGAAAACTTGAGATTTCCGAAAAAATACCGTAAGCACTCTAATAGAACGCCAACCGGACCGTCCACTTTGAGCCTATATATCTCGCCTCTTTTGAAAGATATCAAAAAAATGTCAACTGATAAATTGTTTATCATGATATCAGAAACATTTTATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGAAACATGGGCCCGAATTTGACGATTCGGGTGGCGTTTTATAAGCGTGTTTACGGCATGCGTCTCTGAACTTGGAAACTTCCAGTGACCGTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATATTTGAGATTTTTGGGACAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTCAGCTTATCTCCGAATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATATTTGAGATTTTTGGGACATTTTGGGAATACATTTTTGTGTAGGAAGGAATTTTTTGACAATTTTTTCAATAAAATTTTCATGAAAACTTTGTCTAAAAATTCTGAAAAACGTACCTCTGACATAAATTGTTCGACCGGCCAAAAAATGAGCTCCAGAACTTTCGGGAATCGCCGTTTCTGAACCTGCCAAAAAGAATTGCACATCATTGATGGTTAGACCTCGGATTCGGAGATAAGCTGAAAT</canonical_amplicon>
		<polymorphic_amplicon>AATATTTGAGATTTTTGGGACATTTTGGGAATACATTTTTGTGTAGGAAGGAATTTTTTGACAATTTTTTCAATAAAATTTTCATGAAAACTTTGTCTAAAAATTCTGAAAAACGYACCTCTGACATAAATTGTTCGACCGGCCAAAAAATGAGCTCCAGAACTTTCGGGAATCGCCGTTTCTGAACCTGCCAAAAAGAATTGCACATCATTGATGGTTAGACCTCGGATTCGGAGATAAGCTGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36164</snp_id>
        <super_contig>c010701269.Contig1</super_contig>
        <contig_pos>30326</contig_pos>
        <strand></strand>
        <context>TGACATAAAT[T/A]GTTCGACCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCATGAAAACTTTGTCTAAAAATTCTGAAAAACGTACCTCTGACATAAAT</left_flank>
        <right_flank>GTTCGACCGGCCAAAAAATGAGCTCCAGAACTTTCGGGAATCGCCGTTTC</right_flank>
        <qual_score>49</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAATTTCACAAACTCGGAATTTCGAAACTTAAGAATTTCAGAATATCAGGATTTCAGATTTTCAGAGTTTCGGGATTTCAGGTTTTCAGAATTTTCAGAATTTTCTGAATTCTCTGAATTTCTCAATTTCTCAATTTCAGAATTCTCGAAATTTTAAATTCTTTAGATTTTTTTGTAATTTCAAAATTTCAAAATCCAGTAAAAAACTTCATCAAAAAAAATTCAGAAGAAAAAAAACTGCAATTTCAGTTTTATGTTTTGAATTTGGCGCCAATAAAACCGCTACGAAAAACCCAAACATCTGTAAATATTTACACTGGAAAAAGGACAAAAAACTCGTATTTGCTCTTATTTTCAATAAGGAAAAATATTTGAGATTTTTGGGACATTTTGGGAATACATTTTTGTGTAGGAAGGAATTTTTTGACAATTTTTTCAATAAAATTTTCATGAAAACTTTGTCTAAAAATTCTGAAAAACGTACCTCTGACATAAATTGTTCGACCGGCCAAAAAATGAGCTCCAGAACTTTCGGGAATCGCCGTTTCTGAACCTGCCAAAAAGAATTGCACATCATTGATGGTTAGACCTCGGATTCGGAGATAAGCTGAAATTTTTTTTCAGATTTTTATTTCTTTCAGATTTTTTTTTTGAAAAATTGGTCCAAAGTTAACAGAATGATGGAATTTGGAGTTTTCGGAAAACTTGAGATTTCCGAAAAAATACCGTAAGCACTCTAATAGAACGCCAACCGGACCGTCCACTTTGAGCCTATATATCTCGCCTCTTTTGAAAGATATCAAAAAAATGTCAACTGATAAATTGTTTATCATGATATCAGAAACATTTTATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGAAACATGGGCCCGAATTTGACGATTCGGGTGGCGTTTTATAAGCGTGTTTACGGCATGCGTCTCTGAACTTGGAAACTTCCAGTGACCGTATCTCGGCTCCTAGATAA</canonical>
            <polymorphic>CAGAATTTCACAAACTCGGAATTTCGAAACTTAAGAATTTCAGAATATCAGGATTTCAGATTTTCAGAGTTTCGGGATTTCAGGTTTTCAGAATTTTCAGAATTTTCTGAATTCTCTGAATTTCTCAATTTCTCAATTTCAGAATTCTCGAAATTTTAAATTCTTTAGATTTTTTTGTAATTTCAAAATTTCAAAATCCAGTAAAAAACTTCATCAAAAAAAATTCAGAAGAAAAAAAACTGCAATTTCAGTTTTATGTTTTGAATTTGGCGCCAATAAAACCGCTACGAAAAACCCAAACATCTGTAAATATTTACACTGGAAAAAGGACAAAAAACTCGTATTTGCTCTTATTTTCAATAAGGAAAAATATTTGAGATTTTTGGGACATTTTGGGAATACATTTTTGTGTAGGAAGGAATTTTTTGACAATTTTTTCAATAAAATTTTCATGAAAACTTTGTCTAAAAATTCTGAAAAACGTACCTCTGACATAAATWGTTCGACCGGCCAAAAAATGAGCTCCAGAACTTTCGGGAATCGCCGTTTCTGAACCTGCCAAAAAGAATTGCACATCATTGATGGTTAGACCTCGGATTCGGAGATAAGCTGAAATTTTTTTTCAGATTTTTATTTCTTTCAGATTTTTTTTTTGAAAAATTGGTCCAAAGTTAACAGAATGATGGAATTTGGAGTTTTCGGAAAACTTGAGATTTCCGAAAAAATACCGTAAGCACTCTAATAGAACGCCAACCGGACCGTCCACTTTGAGCCTATATATCTCGCCTCTTTTGAAAGATATCAAAAAAATGTCAACTGATAAATTGTTTATCATGATATCAGAAACATTTTATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGAAACATGGGCCCGAATTTGACGATTCGGGTGGCGTTTTATAAGCGTGTTTACGGCATGCGTCTCTGAACTTGGAAACTTCCAGTGACCGTATCTCGGCTCCTAGATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>156 136 95 83 70 56 47 45 35 28 27 25 22 20 20 16 16 14 11 9 9 9 9 8 8 8 8 7 3</canonical_bands>
                <polymorphic_bands>156 136 97 95 83 56 47 45 35 28 25 22 20 20 16 16 14 11 9 9 9 9 8 8 8 8 7 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATATTTGAGATTTTTGGGACAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTCAGCTTATCTCCGAATC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATATTTGAGATTTTTGGGACATTTTGGGAATACATTTTTGTGTAGGAAGGAATTTTTTGACAATTTTTTCAATAAAATTTTCATGAAAACTTTGTCTAAAAATTCTGAAAAACGTACCTCTGACATAAATTGTTCGACCGGCCAAAAAATGAGCTCCAGAACTTTCGGGAATCGCCGTTTCTGAACCTGCCAAAAAGAATTGCACATCATTGATGGTTAGACCTCGGATTCGGAGATAAGCTGAAAT</canonical_amplicon>
		<polymorphic_amplicon>AATATTTGAGATTTTTGGGACATTTTGGGAATACATTTTTGTGTAGGAAGGAATTTTTTGACAATTTTTTCAATAAAATTTTCATGAAAACTTTGTCTAAAAATTCTGAAAAACGTACCTCTGACATAAATWGTTCGACCGGCCAAAAAATGAGCTCCAGAACTTTCGGGAATCGCCGTTTCTGAACCTGCCAAAAAGAATTGCACATCATTGATGGTTAGACCTCGGATTCGGAGATAAGCTGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36165</snp_id>
        <super_contig>c010701269.Contig1</super_contig>
        <contig_pos>30526</contig_pos>
        <strand></strand>
        <context>TTGGAGTTTT[C/T]GGAAAAYTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTGAAAAATTGGTCCAAAGTTAACAGAATGATGGAATTTGGAGTTTT</left_flank>
        <right_flank>GGAAAACTTGAGATTTCCGAAAAAATACCGTAAGCACTCTAATAGAACGC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAAAAAACTTCATCAAAAAAAATTCAGAAGAAAAAAAACTGCAATTTCAGTTTTATGTTTTGAATTTGGCGCCAATAAAACCGCTACGAAAAACCCAAACATCTGTAAATATTTACACTGGAAAAAGGACAAAAAACTCGTATTTGCTCTTATTTTCAATAAGGAAAAATATTTGAGATTTTTGGGACATTTTGGGAATACATTTTTGTGTAGGAAGGAATTTTTTGACAATTTTTTCAATAAAATTTTCATGAAAACTTTGTCTAAAAATTCTGAAAAACGTACCTCTGACATAAATTGTTCGACCGGCCAAAAAATGAGCTCCAGAACTTTCGGGAATCGCCGTTTCTGAACCTGCCAAAAAGAATTGCACATCATTGATGGTTAGACCTCGGATTCGGAGATAAGCTGAAATTTTTTTTCAGATTTTTATTTCTTTCAGATTTTTTTTTTGAAAAATTGGTCCAAAGTTAACAGAATGATGGAATTTGGAGTTTTCGGAAAACTTGAGATTTCCGAAAAAATACCGTAAGCACTCTAATAGAACGCCAACCGGACCGTCCACTTTGAGCCTATATATCTCGCCTCTTTTGAAAGATATCAAAAAAATGTCAACTGATAAATTGTTTATCATGATATCAGAAACATTTTATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGAAACATGGGCCCGAATTTGACGATTCGGGTGGCGTTTTATAAGCGTGTTTACGGCATGCGTCTCTGAACTTGGAAACTTCCAGTGACCGTATCTCGGCTCCTAGATAAGCTAGAAAACTGATTTTTGGTCCAAAATGGAAAATGTATTTCTGGTTTTTAGATCAATAAAGAAAGAACTCATTTTGAATTTCAACTATTTTCAAATTTGGAATTTCTTCAATTAAAAAGACTTGGTGATATTCACCCTTGAAATTGACACATTTCTATCTAATTTTCATCTTTCTAGCTCATCTAGGAGCCGAGATACA</canonical>
            <polymorphic>GTAAAAAACTTCATCAAAAAAAATTCAGAAGAAAAAAAACTGCAATTTCAGTTTTATGTTTTGAATTTGGCGCCAATAAAACCGCTACGAAAAACCCAAACATCTGTAAATATTTACACTGGAAAAAGGACAAAAAACTCGTATTTGCTCTTATTTTCAATAAGGAAAAATATTTGAGATTTTTGGGACATTTTGGGAATACATTTTTGTGTAGGAAGGAATTTTTTGACAATTTTTTCAATAAAATTTTCATGAAAACTTTGTCTAAAAATTCTGAAAAACGTACCTCTGACATAAATTGTTCGACCGGCCAAAAAATGAGCTCCAGAACTTTCGGGAATCGCCGTTTCTGAACCTGCCAAAAAGAATTGCACATCATTGATGGTTAGACCTCGGATTCGGAGATAAGCTGAAATTTTTTTTCAGATTTTTATTTCTTTCAGATTTTTTTTTTGAAAAATTGGTCCAAAGTTAACAGAATGATGGAATTTGGAGTTTTYGGAAAACTTGAGATTTCCGAAAAAATACCGTAAGCACTCTAATAGAACGCCAACCGGACCGTCCACTTTGAGCCTATATATCTCGCCTCTTTTGAAAGATATCAAAAAAATGTCAACTGATAAATTGTTTATCATGATATCAGAAACATTTTATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGAAACATGGGCCCGAATTTGACGATTCGGGTGGCGTTTTATAAGCGTGTTTACGGCATGCGTCTCTGAACTTGGAAACTTCCAGTGACCGTATCTCGGCTCCTAGATAAGCTAGAAAACTGATTTTTGGTCCAAAATGGAAAATGTATTTCTGGTTTTTAGATCAATAAAGAAAGAACTCATTTTGAATTTCAACTATTTTCAAATTTGGAATTTCTTCAATTAAAAAGACTTGGTGATATTCACCCTTGAAATTGACACATTTCTATCTAATTTTCATCTTTCTAGCTCATCTAGGAGCCGAGATACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>248 243 124 115 61 59 44 27 24 17 17 15 6</canonical_bands>
                <polymorphic_bands>248 243 124 115 76 61 44 27 24 17 15 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGATTTTTATTTCTTTCAGATTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATACATTTTCCATTTTGGAC</pcr_primer_p2>
		<pcr_amplicon_size>418</pcr_amplicon_size>
		<canonical_amplicon>CAGATTTTTATTTCTTTCAGATTTTTTTTTTGAAAAATTGGTCCAAAGTTAACAGAATGATGGAATTTGGAGTTTTCGGAAAACTTGAGATTTCCGAAAAAATACCGTAAGCACTCTAATAGAACGCCAACCGGACCGTCCACTTTGAGCCTATATATCTCGCCTCTTTTGAAAGATATCAAAAAAATGTCAACTGATAAATTGTTTATCATGATATCAGAAACATTTTATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGAAACATGGGCCCGAATTTGACGATTCGGGTGGCGTTTTATAAGCGTGTTTACGGCATGCGTCTCTGAACTTGGAAACTTCCAGTGACCGTATCTCGGCTCCTAGATAAGCTAGAAAACTGATTTTTGGTCCAAAATGGAAAATGTATTT</canonical_amplicon>
		<polymorphic_amplicon>CAGATTTTTATTTCTTTCAGATTTTTTTTTTGAAAAATTGGTCCAAAGTTAACAGAATGATGGAATTTGGAGTTTTYGGAAAACTTGAGATTTCCGAAAAAATACCGTAAGCACTCTAATAGAACGCCAACCGGACCGTCCACTTTGAGCCTATATATCTCGCCTCTTTTGAAAGATATCAAAAAAATGTCAACTGATAAATTGTTTATCATGATATCAGAAACATTTTATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGAAACATGGGCCCGAATTTGACGATTCGGGTGGCGTTTTATAAGCGTGTTTACGGCATGCGTCTCTGAACTTGGAAACTTCCAGTGACCGTATCTCGGCTCCTAGATAAGCTAGAAAACTGATTTTTGGTCCAAAATGGAAAATGTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36166</snp_id>
        <super_contig>c010701269.Contig1</super_contig>
        <contig_pos>30533</contig_pos>
        <strand></strand>
        <context>TTTYGGAAAA[C/T]TTGAGATTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATTGGTCCAAAGTTAACAGAATGATGGAATTTGGAGTTTTCGGAAAA</left_flank>
        <right_flank>TTGAGATTTCCGAAAAAATACCGTAAGCACTCTAATAGAACGCCAACCGG</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTCATCAAAAAAAATTCAGAAGAAAAAAAACTGCAATTTCAGTTTTATGTTTTGAATTTGGCGCCAATAAAACCGCTACGAAAAACCCAAACATCTGTAAATATTTACACTGGAAAAAGGACAAAAAACTCGTATTTGCTCTTATTTTCAATAAGGAAAAATATTTGAGATTTTTGGGACATTTTGGGAATACATTTTTGTGTAGGAAGGAATTTTTTGACAATTTTTTCAATAAAATTTTCATGAAAACTTTGTCTAAAAATTCTGAAAAACGTACCTCTGACATAAATTGTTCGACCGGCCAAAAAATGAGCTCCAGAACTTTCGGGAATCGCCGTTTCTGAACCTGCCAAAAAGAATTGCACATCATTGATGGTTAGACCTCGGATTCGGAGATAAGCTGAAATTTTTTTTCAGATTTTTATTTCTTTCAGATTTTTTTTTTGAAAAATTGGTCCAAAGTTAACAGAATGATGGAATTTGGAGTTTTCGGAAAACTTGAGATTTCCGAAAAAATACCGTAAGCACTCTAATAGAACGCCAACCGGACCGTCCACTTTGAGCCTATATATCTCGCCTCTTTTGAAAGATATCAAAAAAATGTCAACTGATAAATTGTTTATCATGATATCAGAAACATTTTATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGAAACATGGGCCCGAATTTGACGATTCGGGTGGCGTTTTATAAGCGTGTTTACGGCATGCGTCTCTGAACTTGGAAACTTCCAGTGACCGTATCTCGGCTCCTAGATAAGCTAGAAAACTGATTTTTGGTCCAAAATGGAAAATGTATTTCTGGTTTTTAGATCAATAAAGAAAGAACTCATTTTGAATTTCAACTATTTTCAAATTTGGAATTTCTTCAATTAAAAAGACTTGGTGATATTCACCCTTGAAATTGACACATTTCTATCTAATTTTCATCTTTCTAGCTCATCTAGGAGCCGAGATACAACCATCT</canonical>
            <polymorphic>ACTTCATCAAAAAAAATTCAGAAGAAAAAAAACTGCAATTTCAGTTTTATGTTTTGAATTTGGCGCCAATAAAACCGCTACGAAAAACCCAAACATCTGTAAATATTTACACTGGAAAAAGGACAAAAAACTCGTATTTGCTCTTATTTTCAATAAGGAAAAATATTTGAGATTTTTGGGACATTTTGGGAATACATTTTTGTGTAGGAAGGAATTTTTTGACAATTTTTTCAATAAAATTTTCATGAAAACTTTGTCTAAAAATTCTGAAAAACGTACCTCTGACATAAATTGTTCGACCGGCCAAAAAATGAGCTCCAGAACTTTCGGGAATCGCCGTTTCTGAACCTGCCAAAAAGAATTGCACATCATTGATGGTTAGACCTCGGATTCGGAGATAAGCTGAAATTTTTTTTCAGATTTTTATTTCTTTCAGATTTTTTTTTTGAAAAATTGGTCCAAAGTTAACAGAATGATGGAATTTGGAGTTTTCGGAAAAYTTGAGATTTCCGAAAAAATACCGTAAGCACTCTAATAGAACGCCAACCGGACCGTCCACTTTGAGCCTATATATCTCGCCTCTTTTGAAAGATATCAAAAAAATGTCAACTGATAAATTGTTTATCATGATATCAGAAACATTTTATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGAAACATGGGCCCGAATTTGACGATTCGGGTGGCGTTTTATAAGCGTGTTTACGGCATGCGTCTCTGAACTTGGAAACTTCCAGTGACCGTATCTCGGCTCCTAGATAAGCTAGAAAACTGATTTTTGGTCCAAAATGGAAAATGTATTTCTGGTTTTTAGATCAATAAAGAAAGAACTCATTTTGAATTTCAACTATTTTCAAATTTGGAATTTCTTCAATTAAAAAGACTTGGTGATATTCACCCTTGAAATTGACACATTTCTATCTAATTTTCATCTTTCTAGCTCATCTAGGAGCCGAGATACAACCATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAAAATTGGTCCAAAG</pcr_primer_p1>
		<pcr_primer_p2>ACCAGAAATACATTTTCCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAAAATTGGTCCAAAGTTAACAGAATGATGGAATTTGGAGTTTTCGGAAAACTTGAGATTTCCGAAAAAATACCGTAAGCACTCTAATAGAACGCCAACCGGACCGTCCACTTTGAGCCTATATATCTCGCCTCTTTTGAAAGATATCAAAAAAATGTCAACTGATAAATTGTTTATCATGATATCAGAAACATTTTATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGAAACATGGGCCCGAATTTGACGATTCGGGTGGCGTTTTATAAGCGTGTTTACGGCATGCGTCTCTGAACTTGGAAACTTCCAGTGACCGTATCTCGGCTCCTAGATAAGCTAGAAAACTGATTTTTGGTCCAAAATGGAAAATGTATTTCTGGT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAAAATTGGTCCAAAGTTAACAGAATGATGGAATTTGGAGTTTTCGGAAAAYTTGAGATTTCCGAAAAAATACCGTAAGCACTCTAATAGAACGCCAACCGGACCGTCCACTTTGAGCCTATATATCTCGCCTCTTTTGAAAGATATCAAAAAAATGTCAACTGATAAATTGTTTATCATGATATCAGAAACATTTTATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGAAACATGGGCCCGAATTTGACGATTCGGGTGGCGTTTTATAAGCGTGTTTACGGCATGCGTCTCTGAACTTGGAAACTTCCAGTGACCGTATCTCGGCTCCTAGATAAGCTAGAAAACTGATTTTTGGTCCAAAATGGAAAATGTATTTCTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36167</snp_id>
        <super_contig>c010701269.Contig1</super_contig>
        <contig_pos>30557</contig_pos>
        <strand></strand>
        <context>AAAAATaccg[T/A]aagcactcta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGATGGAATTTGGAGTTTTCGGAAAACTTGAGATTTCCGAAAAAATACCG</left_flank>
        <right_flank>AAGCACTCTAATAGAACGCCAACCGGACCGTCCACTTTGAGCCTATATAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAAACTGCAATTTCAGTTTTATGTTTTGAATTTGGCGCCAATAAAACCGCTACGAAAAACCCAAACATCTGTAAATATTTACACTGGAAAAAGGACAAAAAACTCGTATTTGCTCTTATTTTCAATAAGGAAAAATATTTGAGATTTTTGGGACATTTTGGGAATACATTTTTGTGTAGGAAGGAATTTTTTGACAATTTTTTCAATAAAATTTTCATGAAAACTTTGTCTAAAAATTCTGAAAAACGTACCTCTGACATAAATTGTTCGACCGGCCAAAAAATGAGCTCCAGAACTTTCGGGAATCGCCGTTTCTGAACCTGCCAAAAAGAATTGCACATCATTGATGGTTAGACCTCGGATTCGGAGATAAGCTGAAATTTTTTTTCAGATTTTTATTTCTTTCAGATTTTTTTTTTGAAAAATTGGTCCAAAGTTAACAGAATGATGGAATTTGGAGTTTTCGGAAAACTTGAGATTTCCGAAAAAATACCGTAAGCACTCTAATAGAACGCCAACCGGACCGTCCACTTTGAGCCTATATATCTCGCCTCTTTTGAAAGATATCAAAAAAATGTCAACTGATAAATTGTTTATCATGATATCAGAAACATTTTATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGAAACATGGGCCCGAATTTGACGATTCGGGTGGCGTTTTATAAGCGTGTTTACGGCATGCGTCTCTGAACTTGGAAACTTCCAGTGACCGTATCTCGGCTCCTAGATAAGCTAGAAAACTGATTTTTGGTCCAAAATGGAAAATGTATTTCTGGTTTTTAGATCAATAAAGAAAGAACTCATTTTGAATTTCAACTATTTTCAAATTTGGAATTTCTTCAATTAAAAAGACTTGGTGATATTCACCCTTGAAATTGACACATTTCTATCTAATTTTCATCTTTCTAGCTCATCTAGGAGCCGAGATACAACCATCTGAAGTTTTGGAGGGTAGAGACGCA</canonical>
            <polymorphic>AAAAAAAACTGCAATTTCAGTTTTATGTTTTGAATTTGGCGCCAATAAAACCGCTACGAAAAACCCAAACATCTGTAAATATTTACACTGGAAAAAGGACAAAAAACTCGTATTTGCTCTTATTTTCAATAAGGAAAAATATTTGAGATTTTTGGGACATTTTGGGAATACATTTTTGTGTAGGAAGGAATTTTTTGACAATTTTTTCAATAAAATTTTCATGAAAACTTTGTCTAAAAATTCTGAAAAACGTACCTCTGACATAAATTGTTCGACCGGCCAAAAAATGAGCTCCAGAACTTTCGGGAATCGCCGTTTCTGAACCTGCCAAAAAGAATTGCACATCATTGATGGTTAGACCTCGGATTCGGAGATAAGCTGAAATTTTTTTTCAGATTTTTATTTCTTTCAGATTTTTTTTTTGAAAAATTGGTCCAAAGTTAACAGAATGATGGAATTTGGAGTTTTCGGAAAACTTGAGATTTCCGAAAAAATACCGWAAGCACTCTAATAGAACGCCAACCGGACCGTCCACTTTGAGCCTATATATCTCGCCTCTTTTGAAAGATATCAAAAAAATGTCAACTGATAAATTGTTTATCATGATATCAGAAACATTTTATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGAAACATGGGCCCGAATTTGACGATTCGGGTGGCGTTTTATAAGCGTGTTTACGGCATGCGTCTCTGAACTTGGAAACTTCCAGTGACCGTATCTCGGCTCCTAGATAAGCTAGAAAACTGATTTTTGGTCCAAAATGGAAAATGTATTTCTGGTTTTTAGATCAATAAAGAAAGAACTCATTTTGAATTTCAACTATTTTCAAATTTGGAATTTCTTCAATTAAAAAGACTTGGTGATATTCACCCTTGAAATTGACACATTTCTATCTAATTTTCATCTTTCTAGCTCATCTAGGAGCCGAGATACAACCATCTGAAGTTTTGGAGGGTAGAGACGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>498 251 220 31</canonical_bands>
                <polymorphic_bands>529 251 220</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTAACAGAATGATGGAATTTG</pcr_primer_p1>
		<pcr_primer_p2>AAATACATTTTCCATTTTGGAC</pcr_primer_p2>
		<pcr_amplicon_size>372</pcr_amplicon_size>
		<canonical_amplicon>AGTTAACAGAATGATGGAATTTGGAGTTTTCGGAAAACTTGAGATTTCCGAAAAAATACCGTAAGCACTCTAATAGAACGCCAACCGGACCGTCCACTTTGAGCCTATATATCTCGCCTCTTTTGAAAGATATCAAAAAAATGTCAACTGATAAATTGTTTATCATGATATCAGAAACATTTTATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGAAACATGGGCCCGAATTTGACGATTCGGGTGGCGTTTTATAAGCGTGTTTACGGCATGCGTCTCTGAACTTGGAAACTTCCAGTGACCGTATCTCGGCTCCTAGATAAGCTAGAAAACTGATTTTTGGTCCAAAATGGAAAATGTATTT</canonical_amplicon>
		<polymorphic_amplicon>AGTTAACAGAATGATGGAATTTGGAGTTTTCGGAAAACTTGAGATTTCCGAAAAAATACCGWAAGCACTCTAATAGAACGCCAACCGGACCGTCCACTTTGAGCCTATATATCTCGCCTCTTTTGAAAGATATCAAAAAAATGTCAACTGATAAATTGTTTATCATGATATCAGAAACATTTTATCAGTTGACCACTTTTTGATATCTCTCACAGAAAATGAGAAACATGGGCCCGAATTTGACGATTCGGGTGGCGTTTTATAAGCGTGTTTACGGCATGCGTCTCTGAACTTGGAAACTTCCAGTGACCGTATCTCGGCTCCTAGATAAGCTAGAAAACTGATTTTTGGTCCAAAATGGAAAATGTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36168</snp_id>
        <super_contig>c010800318.Contig2</super_contig>
        <contig_pos>26500</contig_pos>
        <strand>+</strand>
        <context>GCAAAATGTC[A/G]AAAATTCCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTGCCAAGTCGGTGGCAGCCAATCCAAAATGGATCATCTGCAAAATGTC</left_flank>
        <right_flank>AAAATTCCAAAAATTCCAAAATTCCATAAATTGCCTGGAAATCAATCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTAGATGTTTTGAATTTTGGATGCTTTGAATTTCAGAAAATCGGAACATTCTAAAAATCCCACTGACCTGCTTCAAATCAAATGGCACTTCCTTATTCTCCTCTTTACAGTATTTCTCCAGGAATTCGAAGTAAATTTCCAAATATTTTTCCTTGTTTTTATGACGGTCTTCTGGAGTCAAGCAGGTGTTGAAAACTCTTGCCAAGTCGGTGGCAGCCAATCCAAAATGGATCATCTGCAAAATGTCGAAAATTCCAAAAATTCCAAAATTCCATAAATTGCCTGGAAATCAATCAATTTCTTGAAATCCCCCTCCTCGTCCCACATGATATTAGCCGACCACAAATCTCCATGGACCAAAACTTTTTTCATTCCTAATTTATTGGGAATACGATCCAATTGATCCGCACAAATCATGTCTGGAAGCGTTTTCGCGAATTTTTCCGTCAACTTTTGCATTTCCTCATCCGGAAAATGAGCCATTAGAGTGTTGTTGAGCTGGAGGAACCAATCCTAAAAATTTACATTTTTTGGTTAAAACAAAATTGAACAATTGGACAAAATTGGGCTGGAAATGTGGTTCGAAATATGTCGAAAGTCATGAAAACAGTTTGAAAACGCATATCTCGAATACTAAACACGCTAGAACAAAATTGTCAACTACAAAATTACTCATCATAAAATTTCACACATTTTTGTAGTTTTCAACTTTTTTCCAGCTACTCTAGTTTTTGAGATATACGTCTTT</canonical>
            <polymorphic>AATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTAGATGTTTTGAATTTTGGATGCTTTGAATTTCAGAAAATCGGAACATTCTAAAAATCCCACTGACCTGCTTCAAATCAAATGGCACTTCCTTATTCTCCTCTTTACAGTATTTCTCCAGGAATTCGAAGTAAATTTCCAAATATTTTTCCTTGTTTTTATGACGGTCTTCTGGAGTCAAGCAGGTGTTGAAAACTCTTGCCAAGTCGGTGGCAGCCAATCCAAAATGGATCATCTGCAAAATGTCRAAAATTCCAAAAATTCCAAAATTCCATAAATTGCCTGGAAATCAATCAATTTCTTGAAATCCCCCTCCTCGTCCCACATGATATTAGCCGACCACAAATCTCCATGGACCAAAACTTTTTTCATTCCTAATTTATTGGGAATACGATCCAATTGATCCGCACAAATCATGTCTGGAAGCGTTTTCGCGAATTTTTCCGTCAACTTTTGCATTTCCTCATCCGGAAAATGAGCCATTAGAGTGTTGTTGAGCTGGAGGAACCAATCCTAAAAATTTACATTTTTTGGTTAAAACAAAATTGAACAATTGGACAAAATTGGGCTGGAAATGTGGTTCGAAATATGTCGAAAGTCATGAAAACAGTTTGAAAACGCATATCTCGAATACTAAACACGCTAGAACAAAATTGTCAACTACAAAATTACTCATCATAAAATTTCACACATTTTTGTAGTTTTCAACTTTTTTCCAGCTACTCTAGTTTTTGAGATATACGTCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>379 336 120 120 35 10</canonical_bands>
                <polymorphic_bands>456 379 120 35 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTCCAAATATTTTTCCTTGT</pcr_primer_p1>
		<pcr_primer_p2>TCCCAATAAATTAGGAATGAAA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>AATTTCCAAATATTTTTCCTTGTTTTTATGACGGTCTTCTGGAGTCAAGCAGGTGTTGAAAACTCTTGCCAAGTCGGTGGCAGCCAATCCAAAATGGATCATCTGCAAAATGTCGAAAATTCCAAAAATTCCAAAATTCCATAAATTGCCTGGAAATCAATCAATTTCTTGAAATCCCCCTCCTCGTCCCACATGATATTAGCCGACCACAAATCTCCATGGACCAAAACTTTTTTCATTCCTAATTTATTGGGA</canonical_amplicon>
		<polymorphic_amplicon>AATTTCCAAATATTTTTCCTTGTTTTTATGACGGTCTTCTGGAGTCAAGCAGGTGTTGAAAACTCTTGCCAAGTCGGTGGCAGCCAATCCAAAATGGATCATCTGCAAAATGTCRAAAATTCCAAAAATTCCAAAATTCCATAAATTGCCTGGAAATCAATCAATTTCTTGAAATCCCCCTCCTCGTCCCACATGATATTAGCCGACCACAAATCTCCATGGACCAAAACTTTTTTCATTCCTAATTTATTGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36169</snp_id>
        <super_contig>c010800318.Contig2</super_contig>
        <contig_pos>26513</contig_pos>
        <strand>+</strand>
        <context>AATTCCAAAA[A/G]TTCCAAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGCAGCCAATCCAAAATGGATCATCTGCAAAATGTCGAAAATTCCAAAA</left_flank>
        <right_flank>TTCCAAAATTCCATAAATTGCCTGGAAATCAATCAATTTCTTGAAATCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTAGATGTTTTGAATTTTGGATGCTTTGAATTTCAGAAAATCGGAACATTCTAAAAATCCCACTGACCTGCTTCAAATCAAATGGCACTTCCTTATTCTCCTCTTTACAGTATTTCTCCAGGAATTCGAAGTAAATTTCCAAATATTTTTCCTTGTTTTTATGACGGTCTTCTGGAGTCAAGCAGGTGTTGAAAACTCTTGCCAAGTCGGTGGCAGCCAATCCAAAATGGATCATCTGCAAAATGTCGAAAATTCCAAAAATTCCAAAATTCCATAAATTGCCTGGAAATCAATCAATTTCTTGAAATCCCCCTCCTCGTCCCACATGATATTAGCCGACCACAAATCTCCATGGACCAAAACTTTTTTCATTCCTAATTTATTGGGAATACGATCCAATTGATCCGCACAAATCATGTCTGGAAGCGTTTTCGCGAATTTTTCCGTCAACTTTTGCATTTCCTCATCCGGAAAATGAGCCATTAGAGTGTTGTTGAGCTGGAGGAACCAATCCTAAAAATTTACATTTTTTGGTTAAAACAAAATTGAACAATTGGACAAAATTGGGCTGGAAATGTGGTTCGAAATATGTCGAAAGTCATGAAAACAGTTTGAAAACGCATATCTCGAATACTAAACACGCTAGAACAAAATTGTCAACTACAAAATTACTCATCATAAAATTTCACACATTTTTGTAGTTTTCAACTTTTTTCCAGCTACTCTAGTTTTTGAGATATACGTCTTTAAAGTTGGGCGAT</canonical>
            <polymorphic>CTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTAGATGTTTTGAATTTTGGATGCTTTGAATTTCAGAAAATCGGAACATTCTAAAAATCCCACTGACCTGCTTCAAATCAAATGGCACTTCCTTATTCTCCTCTTTACAGTATTTCTCCAGGAATTCGAAGTAAATTTCCAAATATTTTTCCTTGTTTTTATGACGGTCTTCTGGAGTCAAGCAGGTGTTGAAAACTCTTGCCAAGTCGGTGGCAGCCAATCCAAAATGGATCATCTGCAAAATGTCGAAAATTCCAAAARTTCCAAAATTCCATAAATTGCCTGGAAATCAATCAATTTCTTGAAATCCCCCTCCTCGTCCCACATGATATTAGCCGACCACAAATCTCCATGGACCAAAACTTTTTTCATTCCTAATTTATTGGGAATACGATCCAATTGATCCGCACAAATCATGTCTGGAAGCGTTTTCGCGAATTTTTCCGTCAACTTTTGCATTTCCTCATCCGGAAAATGAGCCATTAGAGTGTTGTTGAGCTGGAGGAACCAATCCTAAAAATTTACATTTTTTGGTTAAAACAAAATTGAACAATTGGACAAAATTGGGCTGGAAATGTGGTTCGAAATATGTCGAAAGTCATGAAAACAGTTTGAAAACGCATATCTCGAATACTAAACACGCTAGAACAAAATTGTCAACTACAAAATTACTCATCATAAAATTTCACACATTTTTGTAGTTTTCAACTTTTTTCCAGCTACTCTAGTTTTTGAGATATACGTCTTTAAAGTTGGGCGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>169 163 117 94 82 80 16 16 11 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 3</canonical_bands>
                <polymorphic_bands>169 163 117 94 82 80 17 16 16 11 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 3</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>117 94 90 82 81 80 39 25 21 19 16 16 15 15 11 10 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 3</canonical_bands>
                <polymorphic_bands>117 94 90 82 81 80 39 25 21 19 17 16 16 15 15 11 10 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTCCAAATATTTTTCCTTGT</pcr_primer_p1>
		<pcr_primer_p2>TCCCAATAAATTAGGAATGAAA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>AATTTCCAAATATTTTTCCTTGTTTTTATGACGGTCTTCTGGAGTCAAGCAGGTGTTGAAAACTCTTGCCAAGTCGGTGGCAGCCAATCCAAAATGGATCATCTGCAAAATGTCGAAAATTCCAAAAATTCCAAAATTCCATAAATTGCCTGGAAATCAATCAATTTCTTGAAATCCCCCTCCTCGTCCCACATGATATTAGCCGACCACAAATCTCCATGGACCAAAACTTTTTTCATTCCTAATTTATTGGGA</canonical_amplicon>
		<polymorphic_amplicon>AATTTCCAAATATTTTTCCTTGTTTTTATGACGGTCTTCTGGAGTCAAGCAGGTGTTGAAAACTCTTGCCAAGTCGGTGGCAGCCAATCCAAAATGGATCATCTGCAAAATGTCGAAAATTCCAAAARTTCCAAAATTCCATAAATTGCCTGGAAATCAATCAATTTCTTGAAATCCCCCTCCTCGTCCCACATGATATTAGCCGACCACAAATCTCCATGGACCAAAACTTTTTTCATTCCTAATTTATTGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36170</snp_id>
        <super_contig>c010801095.Contig3</super_contig>
        <contig_pos>5112</contig_pos>
        <strand>+</strand>
        <context>ATTTCCTCGA[A/G]AATCGAAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATCAAAAGTTTTGAAGAGCTGGATTTTGAGGGTCTTCCATTTCCTCGA</left_flank>
        <right_flank>AATCGAAACATCTGAAAATCTGAGACAGTTAGAATTCTGGAACTTTAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTATTCTTCCTTCCTTCTTCAGAAGACATCAATCACTTCTTCTTGGGTGTGGTATACACCATACCGTATCTTTTATCCCAATCTCTTCTCAATCTCTTCTTCTTCTTTTTACCCCCAACTCTACGCTCTTCTCATTAATCTCTTTGCCACGTCACGTTATCTGGAGAAGAAGAAGGAGAAGAAGAAGTGTCAGCTGTTAGACTCCACGTAGCAATAGTCACCCAGGACAACACCTCGCCGAGACAACCAAACTTTCGAGTTTCCTTCTTCTTCCTCTTCTTCTTCGCTCATCCCGACGTCAATTGTCATTTTTCTCTGCGCCTCTTGATCTCTAGTCAGATCCCTTTAGTCTCAAAGTTCACTACTAGTAGATCTCAAGACTTTCTTTCTAGTTTGAGTTGTTTTTTGCTGTTGAGTTCAGAATTTTTACCTAGTCTCTGGATTTTCTTAATCAAAAGTTTTGAAGAGCTGGATTTTGAGGGTCTTCCATTTCCTCGAAAATCGAAACATCTGAAAATCTGAGACAGTTAGAATTCTGGAACTTTAAAAGTTTCCAACATTGAAGATTCAGCTTCTTTTTAAATTCAAAGTCTTGAGAAATTCTGAAATGTAGCTTTTCTAAAATTTTTGGAATTTCGCTAAAAACTATCCTTTTTGATTTTAGGCGTGTTAGATGTAAAATTTTACGCTGATTCGAATGGTACCATAATCAGAGCTCTATCAGGAACCGAGTTATGATCATTCTAACTGCGTAACTAGCACAAAAACTGGTCATAACTCTGTCCATTTTGCCGCTAGGGTCTCGATTTTTGTACCATTCGAAGCAGCATAAAATTTTCTTTTTAAAATCTTAAGTTCTAAAAATCTGCTAAAGTCGAAAATCTAGCTCTTCTAAAATTGAAAATTACAAAAAAATCTGTAAAAGACGGGCCTCTAACTTTGACCAAAAGGTTGAATTTTTGCAAATCTTTGAAATTCTGGGGTTTTTTATTCACAAAA</canonical>
            <polymorphic>CTTATTCTTCCTTCCTTCTTCAGAAGACATCAATCACTTCTTCTTGGGTGTGGTATACACCATACCGTATCTTTTATCCCAATCTCTTCTCAATCTCTTCTTCTTCTTTTTACCCCCAACTCTACGCTCTTCTCATTAATCTCTTTGCCACGTCACGTTATCTGGAGAAGAAGAAGGAGAAGAAGAAGTGTCAGCTGTTAGACTCCACGTAGCAATAGTCACCCAGGACAACACCTCGCCGAGACAACCAAACTTTCGAGTTTCCTTCTTCTTCCTCTTCTTCTTCGCTCATCCCGACGTCAATTGTCATTTTTCTCTGCGCCTCTTGATCTCTAGTCAGATCCCTTTAGTCTCAAAGTTCACTACTAGTAGATCTCAAGACTTTCTTTCTAGTTTGAGTTGTTTTTTGCTGTTGAGTTCAGAATTTTTACCTAGTCTCTGGATTTTCTTAATCAAAAGTTTTGAAGAGCTGGATTTTGAGGGTCTTCCATTTCCTCGARAATCGAAACATCTGAAAATCTGAGACAGTTAGAATTCTGGAACTTTAAAAGTTTCCAACATTGAAGATTCAGCTTCTTTTTAAATTCAAAGTCTTGAGAAATTCTGAAATGTAGCTTTTCTAAAATTTTTGGAATTTCGCTAAAAACTATCCTTTTTGATTTTAGGCGTGTTAGATGTAAAATTTTACGCTGATTCGAATGGTACCATAATCAGAGCTCTATCAGGAACCGAGTTATGATCATTCTAACTGCGTAACTAGCACAAAAACTGGTCATAACTCTGTCCATTTTGCCGCTAGGGTCTCGATTTTTGTACCATTCGAAGCAGCATAAAATTTTCTTTTTAAAATCTTAAGTTCTAAAAATCTGCTAAAGTCGAAAATCTAGCTCTTCTAAAATTGAAAATTACAAAAAAATCTGTAAAAGACGGGCCTCTAACTTTGACCAAAAGGTTGAATTTTTGCAAATCTTTGAAATTCTGGGGTTTTTTATTCACAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCCTTTAGTCTCAAAGTTCAC</pcr_primer_p1>
		<pcr_primer_p2>TTTGAATTTAAAAAGAAGCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCCCTTTAGTCTCAAAGTTCACTACTAGTAGATCTCAAGACTTTCTTTCTAGTTTGAGTTGTTTTTTGCTGTTGAGTTCAGAATTTTTACCTAGTCTCTGGATTTTCTTAATCAAAAGTTTTGAAGAGCTGGATTTTGAGGGTCTTCCATTTCCTCGAAAATCGAAACATCTGAAAATCTGAGACAGTTAGAATTCTGGAACTTTAAAAGTTTCCAACATTGAAGATTCAGCTTCTTTTTAAATTCAAA</canonical_amplicon>
		<polymorphic_amplicon>ATCCCTTTAGTCTCAAAGTTCACTACTAGTAGATCTCAAGACTTTCTTTCTAGTTTGAGTTGTTTTTTGCTGTTGAGTTCAGAATTTTTACCTAGTCTCTGGATTTTCTTAATCAAAAGTTTTGAAGAGCTGGATTTTGAGGGTCTTCCATTTCCTCGARAATCGAAACATCTGAAAATCTGAGACAGTTAGAATTCTGGAACTTTAAAAGTTTCCAACATTGAAGATTCAGCTTCTTTTTAAATTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36171</snp_id>
        <super_contig>c010801095.Contig3</super_contig>
        <contig_pos>5178</contig_pos>
        <strand>+</strand>
        <context>CAACATTGAA[C/G]ATTCAGCTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAATCTGAGACAGTTAGAATTCTGGAACTTTAAAAGTTTCCAACATTGAA</left_flank>
        <right_flank>ATTCAGCTTCTTTTTAAATTCAAAGTCTTGAGAAATTCTGAAATGTAGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATCTTTTATCCCAATCTCTTCTCAATCTCTTCTTCTTCTTTTTACCCCCAACTCTACGCTCTTCTCATTAATCTCTTTGCCACGTCACGTTATCTGGAGAAGAAGAAGGAGAAGAAGAAGTGTCAGCTGTTAGACTCCACGTAGCAATAGTCACCCAGGACAACACCTCGCCGAGACAACCAAACTTTCGAGTTTCCTTCTTCTTCCTCTTCTTCTTCGCTCATCCCGACGTCAATTGTCATTTTTCTCTGCGCCTCTTGATCTCTAGTCAGATCCCTTTAGTCTCAAAGTTCACTACTAGTAGATCTCAAGACTTTCTTTCTAGTTTGAGTTGTTTTTTGCTGTTGAGTTCAGAATTTTTACCTAGTCTCTGGATTTTCTTAATCAAAAGTTTTGAAGAGCTGGATTTTGAGGGTCTTCCATTTCCTCGAAAATCGAAACATCTGAAAATCTGAGACAGTTAGAATTCTGGAACTTTAAAAGTTTCCAACATTGAAGATTCAGCTTCTTTTTAAATTCAAAGTCTTGAGAAATTCTGAAATGTAGCTTTTCTAAAATTTTTGGAATTTCGCTAAAAACTATCCTTTTTGATTTTAGGCGTGTTAGATGTAAAATTTTACGCTGATTCGAATGGTACCATAATCAGAGCTCTATCAGGAACCGAGTTATGATCATTCTAACTGCGTAACTAGCACAAAAACTGGTCATAACTCTGTCCATTTTGCCGCTAGGGTCTCGATTTTTGTACCATTCGAAGCAGCATAAAATTTTCTTTTTAAAATCTTAAGTTCTAAAAATCTGCTAAAGTCGAAAATCTAGCTCTTCTAAAATTGAAAATTACAAAAAAATCTGTAAAAGACGGGCCTCTAACTTTGACCAAAAGGTTGAATTTTTGCAAATCTTTGAAATTCTGGGGTTTTTTATTCACAAAATTCTGGCTGTCTCAAATTTCAATACTGGATCCAATTTTCAGATTTTCAAAAAATCTGAGAATCAAA</canonical>
            <polymorphic>GTATCTTTTATCCCAATCTCTTCTCAATCTCTTCTTCTTCTTTTTACCCCCAACTCTACGCTCTTCTCATTAATCTCTTTGCCACGTCACGTTATCTGGAGAAGAAGAAGGAGAAGAAGAAGTGTCAGCTGTTAGACTCCACGTAGCAATAGTCACCCAGGACAACACCTCGCCGAGACAACCAAACTTTCGAGTTTCCTTCTTCTTCCTCTTCTTCTTCGCTCATCCCGACGTCAATTGTCATTTTTCTCTGCGCCTCTTGATCTCTAGTCAGATCCCTTTAGTCTCAAAGTTCACTACTAGTAGATCTCAAGACTTTCTTTCTAGTTTGAGTTGTTTTTTGCTGTTGAGTTCAGAATTTTTACCTAGTCTCTGGATTTTCTTAATCAAAAGTTTTGAAGAGCTGGATTTTGAGGGTCTTCCATTTCCTCGAAAATCGAAACATCTGAAAATCTGAGACAGTTAGAATTCTGGAACTTTAAAAGTTTCCAACATTGAASATTCAGCTTCTTTTTAAATTCAAAGTCTTGAGAAATTCTGAAATGTAGCTTTTCTAAAATTTTTGGAATTTCGCTAAAAACTATCCTTTTTGATTTTAGGCGTGTTAGATGTAAAATTTTACGCTGATTCGAATGGTACCATAATCAGAGCTCTATCAGGAACCGAGTTATGATCATTCTAACTGCGTAACTAGCACAAAAACTGGTCATAACTCTGTCCATTTTGCCGCTAGGGTCTCGATTTTTGTACCATTCGAAGCAGCATAAAATTTTCTTTTTAAAATCTTAAGTTCTAAAAATCTGCTAAAGTCGAAAATCTAGCTCTTCTAAAATTGAAAATTACAAAAAAATCTGTAAAAGACGGGCCTCTAACTTTGACCAAAAGGTTGAATTTTTGCAAATCTTTGAAATTCTGGGGTTTTTTATTCACAAAATTCTGGCTGTCTCAAATTTCAATACTGGATCCAATTTTCAGATTTTCAAAAAATCTGAGAATCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>367 365 135 126 7</canonical_bands>
                <polymorphic_bands>491 367 135 7</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 367 126 7</canonical_bands>
                <polymorphic_bands>626 367 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACATCTGAAAATCTGAGACAG</pcr_primer_p1>
		<pcr_primer_p2>TTAGAATGATCATAACTCGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAACATCTGAAAATCTGAGACAGTTAGAATTCTGGAACTTTAAAAGTTTCCAACATTGAAGATTCAGCTTCTTTTTAAATTCAAAGTCTTGAGAAATTCTGAAATGTAGCTTTTCTAAAATTTTTGGAATTTCGCTAAAAACTATCCTTTTTGATTTTAGGCGTGTTAGATGTAAAATTTTACGCTGATTCGAATGGTACCATAATCAGAGCTCTATCAGGAACCGAGTTATGATCATTCTAA</canonical_amplicon>
		<polymorphic_amplicon>AAACATCTGAAAATCTGAGACAGTTAGAATTCTGGAACTTTAAAAGTTTCCAACATTGAASATTCAGCTTCTTTTTAAATTCAAAGTCTTGAGAAATTCTGAAATGTAGCTTTTCTAAAATTTTTGGAATTTCGCTAAAAACTATCCTTTTTGATTTTAGGCGTGTTAGATGTAAAATTTTACGCTGATTCGAATGGTACCATAATCAGAGCTCTATCAGGAACCGAGTTATGATCATTCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36172</snp_id>
        <super_contig>c010801095.Contig3</super_contig>
        <contig_pos>8596</contig_pos>
        <strand>+</strand>
        <context>TCCCACCCTC[C/T]CCTCTCATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGATCGGTGTCTTCTTCTTCGATCTTCTGAATCTTTTAGATCCCACCCTC</left_flank>
        <right_flank>CCTCTCATTTTTTTTTGTTTCTGGCCGAGAGAGGTAACCCGAGAGCATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAAGATTCTGGAATTTTTAAAGTTCATCTGAAAAAGTTTTTGAACTTTCAGAATCTCCGGCTCTTCAAACGTTTGTTAGTCTAAATGTTGAAATTTCACGATTTTCCATTAGAAAAAAATTTCCGACGTTCCTGATCCTCAGAATCTCCAAAATTCTTCAAATCTAGAATCCTGAGCTTCTGGAAATGTGTGTAGCCGCCAAAATAGCTCGAATGGTCGTCAAAATGCTGGCCAGAAAAGGTTCCAGGCGTTCTTAATCCTGGAACCTTCAAGATCCTAGTCTAGACACCTTCTTCTATCCTCCACCCTCATCCATTTCTTCTTCCACTTCATCCCATTCTCTCTTCCCATTCAATCGTGTTTGACCCCATGTTTGCCCCCTTCTTCCTTACCTCAAATTTTGCTGTTTCCCATTCAACTCCTCGTTATCGACATGTCAAGACAACTGGATCGGTGTCTTCTTCTTCGATCTTCTGAATCTTTTAGATCCCACCCTCCCCTCTCATTTTTTTTTGTTTCTGGCCGAGAGAGGTAACCCGAGAGCATCAGTTTCTTGTTTCGGGAGAGAGAGGGAGAGAGGGAGAGAGGGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCAGTCGTTTTGTAAGCGATGAGATAAAACATTGAGGATATGGAGCCAACTGTCTCATCTCCATCAGTTGATTTCTCTCTCTGAGAAAATGAGAAAAGTGAGGGAGGAGGAGATTCTCTGTGTTAGTATCACCTCCCCATTGATTATCAATTATCATCTCTGTTGGCACTTCCATTTCTCTTTTATTTAATTGATCTTTATGTTTTTGAAATCCTCGTGCTGTCCAGAAATTTTGGTCTTAGAAGTTTCTGGAAGTCCAGAATCTTCCAGAGCCTTCTGAAAGAATAATCTAGCTGTTTTCTCAACGTCTATGGTTCCGGCAACTTCTGGATTCCAGAATCCAGAACTTCCTGAAAGTCCAAAACCTTCC</canonical>
            <polymorphic>TAAAAGATTCTGGAATTTTTAAAGTTCATCTGAAAAAGTTTTTGAACTTTCAGAATCTCCGGCTCTTCAAACGTTTGTTAGTCTAAATGTTGAAATTTCACGATTTTCCATTAGAAAAAAATTTCCGACGTTCCTGATCCTCAGAATCTCCAAAATTCTTCAAATCTAGAATCCTGAGCTTCTGGAAATGTGTGTAGCCGCCAAAATAGCTCGAATGGTCGTCAAAATGCTGGCCAGAAAAGGTTCCAGGCGTTCTTAATCCTGGAACCTTCAAGATCCTAGTCTAGACACCTTCTTCTATCCTCCACCCTCATCCATTTCTTCTTCCACTTCATCCCATTCTCTCTTCCCATTCAATCGTGTTTGACCCCATGTTTGCCCCCTTCTTCCTTACCTCAAATTTTGCTGTTTCCCATTCAACTCCTCGTTATCGACATGTCAAGACAACTGGATCGGTGTCTTCTTCTTCGATCTTCTGAATCTTTTAGATCCCACCCTCYCCTCTCATTTTTTTTTGTTTCTGGCCGAGAGAGGTAACCCGAGAGCATCAGTTTCTTGTTTCGGGAGAGAGAGGGAGAGAGGGAGAGAGGGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCAGTCGTTTTGTAAGCGATGAGATAAAACATTGAGGATATGGAGCCAACTGTCTCATCTCCATCAGTTGATTTCTCTCTCTGAGAAAATGAGAAAAGTGAGGGAGGAGGAGATTCTCTGTGTTAGTATCACCTCCCCATTGATTATCAATTATCATCTCTGTTGGCACTTCCATTTCTCTTTTATTTAATTGATCTTTATGTTTTTGAAATCCTCGTGCTGTCCAGAAATTTTGGTCTTAGAAGTTTCTGGAAGTCCAGAATCTTCCAGAGCCTTCTGAAAGAATAATCTAGCTGTTTTCTCAACGTCTATGGTTCCGGCAACTTCTGGATTCCAGAATCCAGAACTTCCTGAAAGTCCAAAACCTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCGACATGTCAAGACAACTG</pcr_primer_p1>
		<pcr_primer_p2>CTCCATATCCTCAATGTTTTATC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TATCGACATGTCAAGACAACTGGATCGGTGTCTTCTTCTTCGATCTTCTGAATCTTTTAGATCCCACCCTCCCCTCTCATTTTTTTTTGTTTCTGGCCGAGAGAGGTAACCCGAGAGCATCAGTTTCTTGTTTCGGGAGAGAGAGGGAGAGAGGGAGAGAGGGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCAGTCGTTTTGTAAGCGATGAGATAAAACATTGAGGATATGGAG</canonical_amplicon>
		<polymorphic_amplicon>TATCGACATGTCAAGACAACTGGATCGGTGTCTTCTTCTTCGATCTTCTGAATCTTTTAGATCCCACCCTCYCCTCTCATTTTTTTTTGTTTCTGGCCGAGAGAGGTAACCCGAGAGCATCAGTTTCTTGTTTCGGGAGAGAGAGGGAGAGAGGGAGAGAGGGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCAGTCGTTTTGTAAGCGATGAGATAAAACATTGAGGATATGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36173</snp_id>
        <super_contig>c010801095.Contig3</super_contig>
        <contig_pos>9091</contig_pos>
        <strand></strand>
        <context>aagtccaaaa[C/G]cttccagagc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCCGGCAACTTCTGGATTCCAGAATCCAGAACTTCCTGAAAGTCCAAAA</left_flank>
        <right_flank>CTTCCAGAGCCCTTTAGAATAGCCAAAATATAATTTTTTGAGAGTTCACC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCCCCTCTCATTTTTTTTTGTTTCTGGCCGAGAGAGGTAACCCGAGAGCATCAGTTTCTTGTTTCGGGAGAGAGAGGGAGAGAGGGAGAGAGGGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCAGTCGTTTTGTAAGCGATGAGATAAAACATTGAGGATATGGAGCCAACTGTCTCATCTCCATCAGTTGATTTCTCTCTCTGAGAAAATGAGAAAAGTGAGGGAGGAGGAGATTCTCTGTGTTAGTATCACCTCCCCATTGATTATCAATTATCATCTCTGTTGGCACTTCCATTTCTCTTTTATTTAATTGATCTTTATGTTTTTGAAATCCTCGTGCTGTCCAGAAATTTTGGTCTTAGAAGTTTCTGGAAGTCCAGAATCTTCCAGAGCCTTCTGAAAGAATAATCTAGCTGTTTTCTCAACGTCTATGGTTCCGGCAACTTCTGGATTCCAGAATCCAGAACTTCCTGAAAGTCCAAAACCTTCCAGAGCCCTTTAGAATAGCCAAAATATAATTTTTTGAGAGTTCACCTCATAAATATTTTTCATTTAGTATTCTAAAAAAAATTGGCTCCAATTTCAGTAATACATCTGTAAATGGATACAAGTGGGCGTTTGTTCTGTTTACTCCCTATCCCAAGAAAAATATTACTATTTGTCATTCCTTGACCCATTTTTCCAAGACCCCAAATTTTAGATTTCTGGGTTTTCGACCTTTGAAAATTTTTTAAGATTTTGAAGGATTCCTAAAAATCTGAAATTTCTTCTATTCTGAGATCTTAAGGTTCAAGGGATATGATTAAAACATTTTAAAAACAAAGTTCCAGATTTCTGATGAAATTTTCTGAATTTTTGAGATTCATAAATTTCGGGATTTTCTCGATTTTTCGGAAATCTCAGAGTAAAAAGTTTCTGAATTCCAAGGTCTTTATTTTGGCTTGTTCCAATTTTAGATTTTTGAGATTCGGAAATTTCAAAATAA</canonical>
            <polymorphic>CCTCCCCTCTCATTTTTTTTTGTTTCTGGCCGAGAGAGGTAACCCGAGAGCATCAGTTTCTTGTTTCGGGAGAGAGAGGGAGAGAGGGAGAGAGGGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCAGTCGTTTTGTAAGCGATGAGATAAAACATTGAGGATATGGAGCCAACTGTCTCATCTCCATCAGTTGATTTCTCTCTCTGAGAAAATGAGAAAAGTGAGGGAGGAGGAGATTCTCTGTGTTAGTATCACCTCCCCATTGATTATCAATTATCATCTCTGTTGGCACTTCCATTTCTCTTTTATTTAATTGATCTTTATGTTTTTGAAATCCTCGTGCTGTCCAGAAATTTTGGTCTTAGAAGTTTCTGGAAGTCCAGAATCTTCCAGAGCCTTCTGAAAGAATAATCTAGCTGTTTTCTCAACGTCTATGGTTCCGGCAACTTCTGGATTCCAGAATCCAGAACTTCCTGAAAGTCCAAAASCTTCCAGAGCCCTTTAGAATAGCCAAAATATAATTTTTTGAGAGTTCACCTCATAAATATTTTTCATTTAGTATTCTAAAAAAAATTGGCTCCAATTTCAGTAATACATCTGTAAATGGATACAAGTGGGCGTTTGTTCTGTTTACTCCCTATCCCAAGAAAAATATTACTATTTGTCATTCCTTGACCCATTTTTCCAAGACCCCAAATTTTAGATTTCTGGGTTTTCGACCTTTGAAAATTTTTTAAGATTTTGAAGGATTCCTAAAAATCTGAAATTTCTTCTATTCTGAGATCTTAAGGTTCAAGGGATATGATTAAAACATTTTAAAAACAAAGTTCCAGATTTCTGATGAAATTTTCTGAATTTTTGAGATTCATAAATTTCGGGATTTTCTCGATTTTTCGGAAATCTCAGAGTAAAAAGTTTCTGAATTCCAAGGTCTTTATTTTGGCTTGTTCCAATTTTAGATTTTTGAGATTCGGAAATTTCAAAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCTTTATGTTTTTGAAATCCTC</pcr_primer_p1>
		<pcr_primer_p2>AAATGAAAAATATTTATGAGGTGAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GATCTTTATGTTTTTGAAATCCTCGTGCTGTCCAGAAATTTTGGTCTTAGAAGTTTCTGGAAGTCCAGAATCTTCCAGAGCCTTCTGAAAGAATAATCTAGCTGTTTTCTCAACGTCTATGGTTCCGGCAACTTCTGGATTCCAGAATCCAGAACTTCCTGAAAGTCCAAAACCTTCCAGAGCCCTTTAGAATAGCCAAAATATAATTTTTTGAGAGTTCACCTCATAAATATTTTTCATTT</canonical_amplicon>
		<polymorphic_amplicon>GATCTTTATGTTTTTGAAATCCTCGTGCTGTCCAGAAATTTTGGTCTTAGAAGTTTCTGGAAGTCCAGAATCTTCCAGAGCCTTCTGAAAGAATAATCTAGCTGTTTTCTCAACGTCTATGGTTCCGGCAACTTCTGGATTCCAGAATCCAGAACTTCCTGAAAGTCCAAAASCTTCCAGAGCCCTTTAGAATAGCCAAAATATAATTTTTTGAGAGTTCACCTCATAAATATTTTTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36174</snp_id>
        <super_contig>c010801095.Contig3</super_contig>
        <contig_pos>15978</contig_pos>
        <strand>+</strand>
        <context>ACCGAATTTT[C/T]RCAATCGCGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGGCTTCCATCCGGAACTAGCCGATTGCCGATCTGGCCGACCGAATTTT</left_flank>
        <right_flank>ACAATCGCGCGTCAAAATGCTAGAGCGTGTTTGCGTACGCAGCAGCTTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAAAACAGACTCCGAAGGGTGAAATCTGATGGGAAATTCAATTTTCCTACTCTCCACTCTTCTACAGTAACTCTAAACCTAGAAAATTTCAAATGTCGTAAGATTCAATGTTTTGGATGTATTTTGGAGTTTAATGTTTTGTTTTGTTTTTATGTATTTTAATAATGTTATGTTTTTTAATGTTTTAGAGTCAGGGTACAGATAGCAAAACAATTTATTAGATTGAAAGAAAGTTTAAAAACTGCATCCCATATTTTCGACCCAATTGAACGACTCGTTCGAGTTTCCGACATATTCTGCACCAATGATCCAGTTAGAATCGATCGCTCGAATTTCATCAAAAACGAAATTGTAATCCAGCTCACCACGGTTATCGCATGCTCCGCGAGCCGGAACCTGAGCTACTTGGATGTATCCTAAAAATGAATTTTAAAGAAGTTCCCTTTTATGGCTTCCATCCGGAACTAGCCGATTGCCGATCTGGCCGACCGAATTTTCACAATCGCGCGTCAAAATGCTAGAGCGTGTTTGCGTACGCAGCAGCTTATTTTACGACGCACGATGCTTCGTACGCAAACACTCTCTGGCATGGTGACGCGCAAATGCAAAATTTCGGTCGGCCGGCGGTCCCCGATTTTTGACCGACTGAAATTGAAACCTACCAATGTGCTCTTTCAATTTTCTCATCGTTGCTCCAATCTGACCGTTGATTTGTTGAGCATGAAATGTGTCCTGAACATTTTGAATTTTCTCAGATTTTTCAGAAACACCTTACATATTGAATTTTCAAATTCTTCGATTGATCTTTCTCGATCAATCTCACCGCCTCCTCATAATTATTCAAATAATATCCAGGGATTGTGTATTCATTGATTGGCTCAATTAGACAGATCAAGTCTGCTCTTTGAATTTTTCAGCAGCAAAAAGAACATTTTCAGAGTAGACTTCTGAAGCGTTCGCCACGTCATCAGCGGTTTTTGGAATTCCAGCCATCACAT</canonical>
            <polymorphic>GAGAAAACAGACTCCGAAGGGTGAAATCTGATGGGAAATTCAATTTTCCTACTCTCCACTCTTCTACAGTAACTCTAAACCTAGAAAATTTCAAATGTCGTAAGATTCAATGTTTTGGATGTATTTTGGAGTTTAATGTTTTGTTTTGTTTTTATGTATTTTAATAATGTTATGTTTTTTAATGTTTTAGAGTCAGGGTACAGATAGCAAAACAATTTATTAGATTGAAAGAAAGTTTAAAAACTGCATCCCATATTTTCGACCCAATTGAACGACTCGTTCGAGTTTCCGACATATTCTGCACCAATGATCCAGTTAGAATCGATCGCTCGAATTTCATCAAAAACGAAATTGTAATCCAGCTCACCACGGTTATCGCATGCTCCGCGAGCCGGAACCTGAGCTACTTGGATGTATCCTAAAAATGAATTTTAAAGAAGTTCCCTTTTATGGCTTCCATCCGGAACTAGCCGATTGCCGATCTGGCCGACCGAATTTTYACAATCGCGCGTCAAAATGCTAGAGCGTGTTTGCGTACGCAGCAGCTTATTTTACGACGCACGATGCTTCGTACGCAAACACTCTCTGGCATGGTGACGCGCAAATGCAAAATTTCGGTCGGCCGGCGGTCCCCGATTTTTGACCGACTGAAATTGAAACCTACCAATGTGCTCTTTCAATTTTCTCATCGTTGCTCCAATCTGACCGTTGATTTGTTGAGCATGAAATGTGTCCTGAACATTTTGAATTTTCTCAGATTTTTCAGAAACACCTTACATATTGAATTTTCAAATTCTTCGATTGATCTTTCTCGATCAATCTCACCGCCTCCTCATAATTATTCAAATAATATCCAGGGATTGTGTATTCATTGATTGGCTCAATTAGACAGATCAAGTCTGCTCTTTGAATTTTTCAGCAGCAAAAAGAACATTTTCAGAGTAGACTTCTGAAGCGTTCGCCACGTCATCAGCGGTTTTTGGAATTCCAGCCATCACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>245 132 99 75 63 61 53 41 39 35 33 32 28 23 20 15 3 3</canonical_bands>
                <polymorphic_bands>245 160 99 75 63 61 53 41 39 35 33 32 23 20 15 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTGGATGTATCCTAAAAATGAA</pcr_primer_p1>
		<pcr_primer_p2>AATTTCAGTCGGTCAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTGGATGTATCCTAAAAATGAATTTTAAAGAAGTTCCCTTTTATGGCTTCCATCCGGAACTAGCCGATTGCCGATCTGGCCGACCGAATTTTCACAATCGCGCGTCAAAATGCTAGAGCGTGTTTGCGTACGCAGCAGCTTATTTTACGACGCACGATGCTTCGTACGCAAACACTCTCTGGCATGGTGACGCGCAAATGCAAAATTTCGGTCGGCCGGCGGTCCCCGATTTTTGACCGACTGAAATT</canonical_amplicon>
		<polymorphic_amplicon>CTTGGATGTATCCTAAAAATGAATTTTAAAGAAGTTCCCTTTTATGGCTTCCATCCGGAACTAGCCGATTGCCGATCTGGCCGACCGAATTTTYACAATCGCGCGTCAAAATGCTAGAGCGTGTTTGCGTACGCAGCAGCTTATTTTACGACGCACGATGCTTCGTACGCAAACACTCTCTGGCATGGTGACGCGCAAATGCAAAATTTCGGTCGGCCGGCGGTCCCCGATTTTTGACCGACTGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36175</snp_id>
        <super_contig>c010801095.Contig3</super_contig>
        <contig_pos>15979</contig_pos>
        <strand>+</strand>
        <context>CCGAATTTTY[A/G]CAATCGCGCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGCTTCCATCCGGAACTAGCCGATTGCCGATCTGGCCGACCGAATTTTC</left_flank>
        <right_flank>CAATCGCGCGTCAAAATGCTAGAGCGTGTTTGCGTACGCAGCAGCTTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAAACAGACTCCGAAGGGTGAAATCTGATGGGAAATTCAATTTTCCTACTCTCCACTCTTCTACAGTAACTCTAAACCTAGAAAATTTCAAATGTCGTAAGATTCAATGTTTTGGATGTATTTTGGAGTTTAATGTTTTGTTTTGTTTTTATGTATTTTAATAATGTTATGTTTTTTAATGTTTTAGAGTCAGGGTACAGATAGCAAAACAATTTATTAGATTGAAAGAAAGTTTAAAAACTGCATCCCATATTTTCGACCCAATTGAACGACTCGTTCGAGTTTCCGACATATTCTGCACCAATGATCCAGTTAGAATCGATCGCTCGAATTTCATCAAAAACGAAATTGTAATCCAGCTCACCACGGTTATCGCATGCTCCGCGAGCCGGAACCTGAGCTACTTGGATGTATCCTAAAAATGAATTTTAAAGAAGTTCCCTTTTATGGCTTCCATCCGGAACTAGCCGATTGCCGATCTGGCCGACCGAATTTTCACAATCGCGCGTCAAAATGCTAGAGCGTGTTTGCGTACGCAGCAGCTTATTTTACGACGCACGATGCTTCGTACGCAAACACTCTCTGGCATGGTGACGCGCAAATGCAAAATTTCGGTCGGCCGGCGGTCCCCGATTTTTGACCGACTGAAATTGAAACCTACCAATGTGCTCTTTCAATTTTCTCATCGTTGCTCCAATCTGACCGTTGATTTGTTGAGCATGAAATGTGTCCTGAACATTTTGAATTTTCTCAGATTTTTCAGAAACACCTTACATATTGAATTTTCAAATTCTTCGATTGATCTTTCTCGATCAATCTCACCGCCTCCTCATAATTATTCAAATAATATCCAGGGATTGTGTATTCATTGATTGGCTCAATTAGACAGATCAAGTCTGCTCTTTGAATTTTTCAGCAGCAAAAAGAACATTTTCAGAGTAGACTTCTGAAGCGTTCGCCACGTCATCAGCGGTTTTTGGAATTCCAGCCATCACATG</canonical>
            <polymorphic>AGAAAACAGACTCCGAAGGGTGAAATCTGATGGGAAATTCAATTTTCCTACTCTCCACTCTTCTACAGTAACTCTAAACCTAGAAAATTTCAAATGTCGTAAGATTCAATGTTTTGGATGTATTTTGGAGTTTAATGTTTTGTTTTGTTTTTATGTATTTTAATAATGTTATGTTTTTTAATGTTTTAGAGTCAGGGTACAGATAGCAAAACAATTTATTAGATTGAAAGAAAGTTTAAAAACTGCATCCCATATTTTCGACCCAATTGAACGACTCGTTCGAGTTTCCGACATATTCTGCACCAATGATCCAGTTAGAATCGATCGCTCGAATTTCATCAAAAACGAAATTGTAATCCAGCTCACCACGGTTATCGCATGCTCCGCGAGCCGGAACCTGAGCTACTTGGATGTATCCTAAAAATGAATTTTAAAGAAGTTCCCTTTTATGGCTTCCATCCGGAACTAGCCGATTGCCGATCTGGCCGACCGAATTTTCRCAATCGCGCGTCAAAATGCTAGAGCGTGTTTGCGTACGCAGCAGCTTATTTTACGACGCACGATGCTTCGTACGCAAACACTCTCTGGCATGGTGACGCGCAAATGCAAAATTTCGGTCGGCCGGCGGTCCCCGATTTTTGACCGACTGAAATTGAAACCTACCAATGTGCTCTTTCAATTTTCTCATCGTTGCTCCAATCTGACCGTTGATTTGTTGAGCATGAAATGTGTCCTGAACATTTTGAATTTTCTCAGATTTTTCAGAAACACCTTACATATTGAATTTTCAAATTCTTCGATTGATCTTTCTCGATCAATCTCACCGCCTCCTCATAATTATTCAAATAATATCCAGGGATTGTGTATTCATTGATTGGCTCAATTAGACAGATCAAGTCTGCTCTTTGAATTTTTCAGCAGCAAAAAGAACATTTTCAGAGTAGACTTCTGAAGCGTTCGCCACGTCATCAGCGGTTTTTGGAATTCCAGCCATCACATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>245 132 99 75 63 61 53 41 39 35 33 32 28 22 20 15 4 3</canonical_bands>
                <polymorphic_bands>245 160 99 75 63 61 53 41 39 35 33 32 22 20 15 4 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTGGATGTATCCTAAAAATGAA</pcr_primer_p1>
		<pcr_primer_p2>AATTTCAGTCGGTCAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTGGATGTATCCTAAAAATGAATTTTAAAGAAGTTCCCTTTTATGGCTTCCATCCGGAACTAGCCGATTGCCGATCTGGCCGACCGAATTTTCACAATCGCGCGTCAAAATGCTAGAGCGTGTTTGCGTACGCAGCAGCTTATTTTACGACGCACGATGCTTCGTACGCAAACACTCTCTGGCATGGTGACGCGCAAATGCAAAATTTCGGTCGGCCGGCGGTCCCCGATTTTTGACCGACTGAAATT</canonical_amplicon>
		<polymorphic_amplicon>CTTGGATGTATCCTAAAAATGAATTTTAAAGAAGTTCCCTTTTATGGCTTCCATCCGGAACTAGCCGATTGCCGATCTGGCCGACCGAATTTTCRCAATCGCGCGTCAAAATGCTAGAGCGTGTTTGCGTACGCAGCAGCTTATTTTACGACGCACGATGCTTCGTACGCAAACACTCTCTGGCATGGTGACGCGCAAATGCAAAATTTCGGTCGGCCGGCGGTCCCCGATTTTTGACCGACTGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36176</snp_id>
        <super_contig>c010801095.Contig3</super_contig>
        <contig_pos>19778</contig_pos>
        <strand></strand>
        <context>ctttgaactt[T/C]tacaaaaggg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAGAATATCATATTTTGACATTTTTGTGGAAAATACTCAACTTTGAACTT</left_flank>
        <right_flank>TACAAAAGGGCTTCAGAATGTTTCATTGTGTCTGAAAATTTCAGAATATG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTGTTGACGATGGAATTTGTGTTGATTTGATTGTTATTGGAATTGGAATTGGAATTTGAAGATCCCCCAGATGGACAATTGTACAATTTATTGATTTTCCGAACATCAACATCCGAAAACTTGACACGTTGACCCATTCTTTCGGAGCCAGACTGCAATTGTTTTGTTTCAAACTTCAATTCTAACGGTTCAATAGAGCGGACTAGCGAACTTACTTTCTTTGGCACCAGGGTCTTTTTGCCTGATCCACTGAATGCGTATGGTCCATAATGCATAATAGAGGCATAGTCATATGGCTCATCCAAATGAGAAATGACATTCAGATTGTATTTTTCGAATTGATCATCGGCTCCATTCATCACATTCTGCCAGACGACATCGATGTAGCTGTCACGGTCTTGTCTGGAAATTTCAGAATTTAGGAACATACTTTTTATACAGAACAGGAAGAATATCATATTTTGACATTTTTGTGGAAAATACTCAACTTTGAACTTTTACAAAAGGGCTTCAGAATGTTTCATTGTGTCTGAAAATTTCAGAATATGCACAACAATATTGCAGCTTCATTTTTATAGTTGAAAACTTTTTTACACCTATTTTTGGTTGTTGAGATATGCGCCTTTATAACCTGGTGTGTCTGCGTCTCTCGGTGATCTAGCATCCCGTCTTTAAAATCGCATATCTCAAGAAATAAAATAGGTGCAAAAAAGTCGTCAATTACAAAACTCAAGCTCTATTTTTGGTTAGTATACTCTGAGATTTTCAAACAAATCGAATATTTTAAAACTGCTTTTGTAGGCCTTCATTTTTTTAATGAAAAGTCAAAAATGGATTTTTTGCTGTCAGTACTGTAGACCCGAAACTTCCAAAGTTTTTAGAATTTCAGGCCCCAAAGCATTTCTAATCTTGAAATTTCAGTACTTCAGATCTTCAAATCTAGAAAAACTCTAAAATTTCAACAAAAAAAAATCAAATACACAATTTTTTAATTTTAT</canonical>
            <polymorphic>GATTGTTGACGATGGAATTTGTGTTGATTTGATTGTTATTGGAATTGGAATTGGAATTTGAAGATCCCCCAGATGGACAATTGTACAATTTATTGATTTTCCGAACATCAACATCCGAAAACTTGACACGTTGACCCATTCTTTCGGAGCCAGACTGCAATTGTTTTGTTTCAAACTTCAATTCTAACGGTTCAATAGAGCGGACTAGCGAACTTACTTTCTTTGGCACCAGGGTCTTTTTGCCTGATCCACTGAATGCGTATGGTCCATAATGCATAATAGAGGCATAGTCATATGGCTCATCCAAATGAGAAATGACATTCAGATTGTATTTTTCGAATTGATCATCGGCTCCATTCATCACATTCTGCCAGACGACATCGATGTAGCTGTCACGGTCTTGTCTGGAAATTTCAGAATTTAGGAACATACTTTTTATACAGAACAGGAAGAATATCATATTTTGACATTTTTGTGGAAAATACTCAACTTTGAACTTYTACAAAAGGGCTTCAGAATGTTTCATTGTGTCTGAAAATTTCAGAATATGCACAACAATATTGCAGCTTCATTTTTATAGTTGAAAACTTTTTTACACCTATTTTTGGTTGTTGAGATATGCGCCTTTATAACCTGGTGTGTCTGCGTCTCTCGGTGATCTAGCATCCCGTCTTTAAAATCGCATATCTCAAGAAATAAAATAGGTGCAAAAAAGTCGTCAATTACAAAACTCAAGCTCTATTTTTGGTTAGTATACTCTGAGATTTTCAAACAAATCGAATATTTTAAAACTGCTTTTGTAGGCCTTCATTTTTTTAATGAAAAGTCAAAAATGGATTTTTTGCTGTCAGTACTGTAGACCCGAAACTTCCAAAGTTTTTAGAATTTCAGGCCCCAAAGCATTTCTAATCTTGAAATTTCAGTACTTCAGATCTTCAAATCTAGAAAAACTCTAAAATTTCAACAAAAAAAAATCAAATACACAATTTTTTAATTTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTATACAGAACAGGAAGAATATCAT</pcr_primer_p1>
		<pcr_primer_p2>AATCCATTTTTGACTTTTCATTA</pcr_primer_p2>
		<pcr_amplicon_size>405</pcr_amplicon_size>
		<canonical_amplicon>TTTATACAGAACAGGAAGAATATCATATTTTGACATTTTTGTGGAAAATACTCAACTTTGAACTTTTACAAAAGGGCTTCAGAATGTTTCATTGTGTCTGAAAATTTCAGAATATGCACAACAATATTGCAGCTTCATTTTTATAGTTGAAAACTTTTTTACACCTATTTTTGGTTGTTGAGATATGCGCCTTTATAACCTGGTGTGTCTGCGTCTCTCGGTGATCTAGCATCCCGTCTTTAAAATCGCATATCTCAAGAAATAAAATAGGTGCAAAAAAGTCGTCAATTACAAAACTCAAGCTCTATTTTTGGTTAGTATACTCTGAGATTTTCAAACAAATCGAATATTTTAAAACTGCTTTTGTAGGCCTTCATTTTTTTAATGAAAAGTCAAAAATGGATT</canonical_amplicon>
		<polymorphic_amplicon>TTTATACAGAACAGGAAGAATATCATATTTTGACATTTTTGTGGAAAATACTCAACTTTGAACTTYTACAAAAGGGCTTCAGAATGTTTCATTGTGTCTGAAAATTTCAGAATATGCACAACAATATTGCAGCTTCATTTTTATAGTTGAAAACTTTTTTACACCTATTTTTGGTTGTTGAGATATGCGCCTTTATAACCTGGTGTGTCTGCGTCTCTCGGTGATCTAGCATCCCGTCTTTAAAATCGCATATCTCAAGAAATAAAATAGGTGCAAAAAAGTCGTCAATTACAAAACTCAAGCTCTATTTTTGGTTAGTATACTCTGAGATTTTCAAACAAATCGAATATTTTAAAACTGCTTTTGTAGGCCTTCATTTTTTTAATGAAAAGTCAAAAATGGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36177</snp_id>
        <super_contig>c010801095.Contig3</super_contig>
        <contig_pos>102891</contig_pos>
        <strand>+</strand>
        <context>CAACCGTGTG[C/T]CCGACCACAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCACCGATTCCCTGTGGAGCTCGTCTTCCAGTATGCTCTCAACCGTGTG</left_flank>
        <right_flank>CCGACCACATTCTTGCGATCATCCAGTCAATCATAAATGCCACGGAGAAC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACAAATGGCTCACTTGTGGAACTCCGGGGAAGAATCATCGGTGCAGGGAGAAATGTCACGAAGACCAATGTCCGCCATGTAACCTGAATACTTCTGTAGTTTGTCGCTGCGGATCTTCGAAAGGAGTTATTCTATGTGAAGAGTATTTGGAGATCATGAGAACTAGTGAGTTTTGGGGGGGGGGGTTCCAGTGGAAAACTAAACGTAAATTTTCAGCTGGCGAATATCTGTGCACGAAACGATGCCGGAAGAAGAAATCCTGTGGAATGCACAAATGTCAAGAAGTCTGTTGCATTCAGGATGAGCATTACTGCCTTCAAATGTGCAACAAACGACTGTCCTGTGGAATACACACCTGCGAGAACGTTTGTCATGCCGGACAGTGTCGTCCTTGTCTTCAAGCAAGCTTCGACGAACAGTTCTGTCACTGTGGACACACTGTTCGAATGCCACCGATTCCCTGTGGAGCTCGTCTTCCAGTATGCTCTCAACCGTGTGTCCGACCACATTCTTGCGATCATCCAGTCAATCATAAATGCCACGGAGAACCAAATTGTCCTCCTTGCACACATCTAACGGATAAAACTTGCTATGGAGGGCATACAGTTCGCAAGAACATACCATGCCATATTCAATCTGTATCCTGCGGAGTTATCTGTCAGAAGCCGTTGAAATGTGGTGTTCACGTTTGCCAAAGAACCTGCCATGGAGACGAATGTGAAAAGGAAGGAGAACAATGTACAAAGAAGTGTGAAGCGATTCGAGAGCGTTGTGAACATCCATGTGGTCTACCATGTCATAAAGACTCGCCATGTGAGCCAAGTCCTTGCAAAACGAACGTTCAAATTACTTGCGAATGTGGAAGGCTCAAAAAAGCAGCACCATGTTGCGAAGTAGACAAACTGATTGAAGCGAAACAGGAGAAGGAGGAAACCGAGAAATCAGGAGATTCTGGAGATTCTGGAGACCAGGATAAGCCTGGAAAACTTGTCAGATCAT</canonical>
            <polymorphic>GACAAATGGCTCACTTGTGGAACTCCGGGGAAGAATCATCGGTGCAGGGAGAAATGTCACGAAGACCAATGTCCGCCATGTAACCTGAATACTTCTGTAGTTTGTCGCTGCGGATCTTCGAAAGGAGTTATTCTATGTGAAGAGTATTTGGAGATCATGAGAACTAGTGAGTTTTGGGGGGGGGGGTTCCAGTGGAAAACTAAACGTAAATTTTCAGCTGGCGAATATCTGTGCACGAAACGATGCCGGAAGAAGAAATCCTGTGGAATGCACAAATGTCAAGAAGTCTGTTGCATTCAGGATGAGCATTACTGCCTTCAAATGTGCAACAAACGACTGTCCTGTGGAATACACACCTGCGAGAACGTTTGTCATGCCGGACAGTGTCGTCCTTGTCTTCAAGCAAGCTTCGACGAACAGTTCTGTCACTGTGGACACACTGTTCGAATGCCACCGATTCCCTGTGGAGCTCGTCTTCCAGTATGCTCTCAACCGTGTGYCCGACCACATTCTTGCGATCATCCAGTCAATCATAAATGCCACGGAGAACCAAATTGTCCTCCTTGCACACATCTAACGGATAAAACTTGCTATGGAGGGCATACAGTTCGCAAGAACATACCATGCCATATTCAATCTGTATCCTGCGGAGTTATCTGTCAGAAGCCGTTGAAATGTGGTGTTCACGTTTGCCAAAGAACCTGCCATGGAGACGAATGTGAAAAGGAAGGAGAACAATGTACAAAGAAGTGTGAAGCGATTCGAGAGCGTTGTGAACATCCATGTGGTCTACCATGTCATAAAGACTCGCCATGTGAGCCAAGTCCTTGCAAAACGAACGTTCAAATTACTTGCGAATGTGGAAGGCTCAAAAAAGCAGCACCATGTTGCGAAGTAGACAAACTGATTGAAGCGAAACAGGAGAAGGAGGAAACCGAGAAATCAGGAGATTCTGGAGATTCTGGAGACCAGGATAAGCCTGGAAAACTTGTCAGATCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>502 332 160 6</canonical_bands>
                <polymorphic_bands>662 332 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATACACACCTGCGAGAAC</pcr_primer_p1>
		<pcr_primer_p2>CATAGCAAGTTTTATCCGTTAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAATACACACCTGCGAGAACGTTTGTCATGCCGGACAGTGTCGTCCTTGTCTTCAAGCAAGCTTCGACGAACAGTTCTGTCACTGTGGACACACTGTTCGAATGCCACCGATTCCCTGTGGAGCTCGTCTTCCAGTATGCTCTCAACCGTGTGTCCGACCACATTCTTGCGATCATCCAGTCAATCATAAATGCCACGGAGAACCAAATTGTCCTCCTTGCACACATCTAACGGATAAAACTTGCTATG</canonical_amplicon>
		<polymorphic_amplicon>GAATACACACCTGCGAGAACGTTTGTCATGCCGGACAGTGTCGTCCTTGTCTTCAAGCAAGCTTCGACGAACAGTTCTGTCACTGTGGACACACTGTTCGAATGCCACCGATTCCCTGTGGAGCTCGTCTTCCAGTATGCTCTCAACCGTGTGYCCGACCACATTCTTGCGATCATCCAGTCAATCATAAATGCCACGGAGAACCAAATTGTCCTCCTTGCACACATCTAACGGATAAAACTTGCTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36178</snp_id>
        <super_contig>c010801095.Contig3</super_contig>
        <contig_pos>103102</contig_pos>
        <strand>+</strand>
        <context>CCTGCCATGG[A/G]GACGAATGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGAAGCCGTTGAAATGTGGTGTTCACGTTTGCCAAAGAACCTGCCATGG</left_flank>
        <right_flank>GACGAATGTGAAAAGGAAGGAGAACAATGTACAAAGAAGTGTGAAGCGAT</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAGCTGGCGAATATCTGTGCACGAAACGATGCCGGAAGAAGAAATCCTGTGGAATGCACAAATGTCAAGAAGTCTGTTGCATTCAGGATGAGCATTACTGCCTTCAAATGTGCAACAAACGACTGTCCTGTGGAATACACACCTGCGAGAACGTTTGTCATGCCGGACAGTGTCGTCCTTGTCTTCAAGCAAGCTTCGACGAACAGTTCTGTCACTGTGGACACACTGTTCGAATGCCACCGATTCCCTGTGGAGCTCGTCTTCCAGTATGCTCTCAACCGTGTGTCCGACCACATTCTTGCGATCATCCAGTCAATCATAAATGCCACGGAGAACCAAATTGTCCTCCTTGCACACATCTAACGGATAAAACTTGCTATGGAGGGCATACAGTTCGCAAGAACATACCATGCCATATTCAATCTGTATCCTGCGGAGTTATCTGTCAGAAGCCGTTGAAATGTGGTGTTCACGTTTGCCAAAGAACCTGCCATGGAGACGAATGTGAAAAGGAAGGAGAACAATGTACAAAGAAGTGTGAAGCGATTCGAGAGCGTTGTGAACATCCATGTGGTCTACCATGTCATAAAGACTCGCCATGTGAGCCAAGTCCTTGCAAAACGAACGTTCAAATTACTTGCGAATGTGGAAGGCTCAAAAAAGCAGCACCATGTTGCGAAGTAGACAAACTGATTGAAGCGAAACAGGAGAAGGAGGAAACCGAGAAATCAGGAGATTCTGGAGATTCTGGAGACCAGGATAAGCCTGGAAAACTTGTCAGATCATCAAGCTTCTCTCAACTGAACTGTATGAAGTGTGACGACGATTGCAAGAAGCTGGAGAGAAATCGAAAGGTGGCTGAAGCTCTAGAAGTCGATACCGATGAGTATGGAATGAACAAACTGACGCCTACTATCTCTTTCCCTTGCTATCTGAAAGCTATGGTTCGAGCAAACATAGATTTCGTCAAAAATGTTGAAAAGGTCTTTATTGATCT</canonical>
            <polymorphic>TTTCAGCTGGCGAATATCTGTGCACGAAACGATGCCGGAAGAAGAAATCCTGTGGAATGCACAAATGTCAAGAAGTCTGTTGCATTCAGGATGAGCATTACTGCCTTCAAATGTGCAACAAACGACTGTCCTGTGGAATACACACCTGCGAGAACGTTTGTCATGCCGGACAGTGTCGTCCTTGTCTTCAAGCAAGCTTCGACGAACAGTTCTGTCACTGTGGACACACTGTTCGAATGCCACCGATTCCCTGTGGAGCTCGTCTTCCAGTATGCTCTCAACCGTGTGTCCGACCACATTCTTGCGATCATCCAGTCAATCATAAATGCCACGGAGAACCAAATTGTCCTCCTTGCACACATCTAACGGATAAAACTTGCTATGGAGGGCATACAGTTCGCAAGAACATACCATGCCATATTCAATCTGTATCCTGCGGAGTTATCTGTCAGAAGCCGTTGAAATGTGGTGTTCACGTTTGCCAAAGAACCTGCCATGGRGACGAATGTGAAAAGGAAGGAGAACAATGTACAAAGAAGTGTGAAGCGATTCGAGAGCGTTGTGAACATCCATGTGGTCTACCATGTCATAAAGACTCGCCATGTGAGCCAAGTCCTTGCAAAACGAACGTTCAAATTACTTGCGAATGTGGAAGGCTCAAAAAAGCAGCACCATGTTGCGAAGTAGACAAACTGATTGAAGCGAAACAGGAGAAGGAGGAAACCGAGAAATCAGGAGATTCTGGAGATTCTGGAGACCAGGATAAGCCTGGAAAACTTGTCAGATCATCAAGCTTCTCTCAACTGAACTGTATGAAGTGTGACGACGATTGCAAGAAGCTGGAGAGAAATCGAAAGGTGGCTGAAGCTCTAGAAGTCGATACCGATGAGTATGGAATGAACAAACTGACGCCTACTATCTCTTTCCCTTGCTATCTGAAAGCTATGGTTCGAGCAAACATAGATTTCGTCAAAAATGTTGAAAAGGTCTTTATTGATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACACATCTAACGGATAAAACTT</pcr_primer_p1>
		<pcr_primer_p2>CGAGTCTTTATGACATGGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CACACATCTAACGGATAAAACTTGCTATGGAGGGCATACAGTTCGCAAGAACATACCATGCCATATTCAATCTGTATCCTGCGGAGTTATCTGTCAGAAGCCGTTGAAATGTGGTGTTCACGTTTGCCAAAGAACCTGCCATGGAGACGAATGTGAAAAGGAAGGAGAACAATGTACAAAGAAGTGTGAAGCGATTCGAGAGCGTTGTGAACATCCATGTGGTCTACCATGTCATAAAGACTCG</canonical_amplicon>
		<polymorphic_amplicon>CACACATCTAACGGATAAAACTTGCTATGGAGGGCATACAGTTCGCAAGAACATACCATGCCATATTCAATCTGTATCCTGCGGAGTTATCTGTCAGAAGCCGTTGAAATGTGGTGTTCACGTTTGCCAAAGAACCTGCCATGGRGACGAATGTGAAAAGGAAGGAGAACAATGTACAAAGAAGTGTGAAGCGATTCGAGAGCGTTGTGAACATCCATGTGGTCTACCATGTCATAAAGACTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36179</snp_id>
        <super_contig>c010801095.Contig3</super_contig>
        <contig_pos>103161</contig_pos>
        <strand>+</strand>
        <context>ATTCGAGAGC[A/G]TTGTGAACAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAAAGGAAGGAGAACAATGTACAAAGAAGTGTGAAGCGATTCGAGAGC</left_flank>
        <right_flank>TTGTGAACATCCATGTGGTCTACCATGTCATAAAGACTCGCCATGTGAGC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACAAATGTCAAGAAGTCTGTTGCATTCAGGATGAGCATTACTGCCTTCAAATGTGCAACAAACGACTGTCCTGTGGAATACACACCTGCGAGAACGTTTGTCATGCCGGACAGTGTCGTCCTTGTCTTCAAGCAAGCTTCGACGAACAGTTCTGTCACTGTGGACACACTGTTCGAATGCCACCGATTCCCTGTGGAGCTCGTCTTCCAGTATGCTCTCAACCGTGTGTCCGACCACATTCTTGCGATCATCCAGTCAATCATAAATGCCACGGAGAACCAAATTGTCCTCCTTGCACACATCTAACGGATAAAACTTGCTATGGAGGGCATACAGTTCGCAAGAACATACCATGCCATATTCAATCTGTATCCTGCGGAGTTATCTGTCAGAAGCCGTTGAAATGTGGTGTTCACGTTTGCCAAAGAACCTGCCATGGAGACGAATGTGAAAAGGAAGGAGAACAATGTACAAAGAAGTGTGAAGCGATTCGAGAGCGTTGTGAACATCCATGTGGTCTACCATGTCATAAAGACTCGCCATGTGAGCCAAGTCCTTGCAAAACGAACGTTCAAATTACTTGCGAATGTGGAAGGCTCAAAAAAGCAGCACCATGTTGCGAAGTAGACAAACTGATTGAAGCGAAACAGGAGAAGGAGGAAACCGAGAAATCAGGAGATTCTGGAGATTCTGGAGACCAGGATAAGCCTGGAAAACTTGTCAGATCATCAAGCTTCTCTCAACTGAACTGTATGAAGTGTGACGACGATTGCAAGAAGCTGGAGAGAAATCGAAAGGTGGCTGAAGCTCTAGAAGTCGATACCGATGAGTATGGAATGAACAAACTGACGCCTACTATCTCTTTCCCTTGCTATCTGAAAGCTATGGTTCGAGCAAACATAGATTTCGTCAAAAATGTTGAAAAGGTCTTTATTGATCTTGTTATCAAAGTGCTAAGCGTAAGATGTTTAAAAATTTATTCTAACCGAGAGGAAACCG</canonical>
            <polymorphic>CACAAATGTCAAGAAGTCTGTTGCATTCAGGATGAGCATTACTGCCTTCAAATGTGCAACAAACGACTGTCCTGTGGAATACACACCTGCGAGAACGTTTGTCATGCCGGACAGTGTCGTCCTTGTCTTCAAGCAAGCTTCGACGAACAGTTCTGTCACTGTGGACACACTGTTCGAATGCCACCGATTCCCTGTGGAGCTCGTCTTCCAGTATGCTCTCAACCGTGTGTCCGACCACATTCTTGCGATCATCCAGTCAATCATAAATGCCACGGAGAACCAAATTGTCCTCCTTGCACACATCTAACGGATAAAACTTGCTATGGAGGGCATACAGTTCGCAAGAACATACCATGCCATATTCAATCTGTATCCTGCGGAGTTATCTGTCAGAAGCCGTTGAAATGTGGTGTTCACGTTTGCCAAAGAACCTGCCATGGAGACGAATGTGAAAAGGAAGGAGAACAATGTACAAAGAAGTGTGAAGCGATTCGAGAGCRTTGTGAACATCCATGTGGTCTACCATGTCATAAAGACTCGCCATGTGAGCCAAGTCCTTGCAAAACGAACGTTCAAATTACTTGCGAATGTGGAAGGCTCAAAAAAGCAGCACCATGTTGCGAAGTAGACAAACTGATTGAAGCGAAACAGGAGAAGGAGGAAACCGAGAAATCAGGAGATTCTGGAGATTCTGGAGACCAGGATAAGCCTGGAAAACTTGTCAGATCATCAAGCTTCTCTCAACTGAACTGTATGAAGTGTGACGACGATTGCAAGAAGCTGGAGAGAAATCGAAAGGTGGCTGAAGCTCTAGAAGTCGATACCGATGAGTATGGAATGAACAAACTGACGCCTACTATCTCTTTCCCTTGCTATCTGAAAGCTATGGTTCGAGCAAACATAGATTTCGTCAAAAATGTTGAAAAGGTCTTTATTGATCTTGTTATCAAAGTGCTAAGCGTAAGATGTTTAAAAATTTATTCTAACCGAGAGGAAACCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATACCATGCCATATTCAATC</pcr_primer_p1>
		<pcr_primer_p2>CTTCCACATTCGCAAGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATACCATGCCATATTCAATCTGTATCCTGCGGAGTTATCTGTCAGAAGCCGTTGAAATGTGGTGTTCACGTTTGCCAAAGAACCTGCCATGGAGACGAATGTGAAAAGGAAGGAGAACAATGTACAAAGAAGTGTGAAGCGATTCGAGAGCGTTGTGAACATCCATGTGGTCTACCATGTCATAAAGACTCGCCATGTGAGCCAAGTCCTTGCAAAACGAACGTTCAAATTACTTGCGAATGTGGAAG</canonical_amplicon>
		<polymorphic_amplicon>CATACCATGCCATATTCAATCTGTATCCTGCGGAGTTATCTGTCAGAAGCCGTTGAAATGTGGTGTTCACGTTTGCCAAAGAACCTGCCATGGAGACGAATGTGAAAAGGAAGGAGAACAATGTACAAAGAAGTGTGAAGCGATTCGAGAGCRTTGTGAACATCCATGTGGTCTACCATGTCATAAAGACTCGCCATGTGAGCCAAGTCCTTGCAAAACGAACGTTCAAATTACTTGCGAATGTGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36180</snp_id>
        <super_contig>c010801095.Contig3</super_contig>
        <contig_pos>103258</contig_pos>
        <strand>+</strand>
        <context>AATGTGGAAG[A/G]CTCAAAAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGCCAAGTCCTTGCAAAACGAACGTTCAAATTACTTGCGAATGTGGAAG</left_flank>
        <right_flank>CTCAAAAAAGCAGCACCATGTTGCGAAGTAGACAAACTGATTGAAGCGAA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGTCATGCCGGACAGTGTCGTCCTTGTCTTCAAGCAAGCTTCGACGAACAGTTCTGTCACTGTGGACACACTGTTCGAATGCCACCGATTCCCTGTGGAGCTCGTCTTCCAGTATGCTCTCAACCGTGTGTCCGACCACATTCTTGCGATCATCCAGTCAATCATAAATGCCACGGAGAACCAAATTGTCCTCCTTGCACACATCTAACGGATAAAACTTGCTATGGAGGGCATACAGTTCGCAAGAACATACCATGCCATATTCAATCTGTATCCTGCGGAGTTATCTGTCAGAAGCCGTTGAAATGTGGTGTTCACGTTTGCCAAAGAACCTGCCATGGAGACGAATGTGAAAAGGAAGGAGAACAATGTACAAAGAAGTGTGAAGCGATTCGAGAGCGTTGTGAACATCCATGTGGTCTACCATGTCATAAAGACTCGCCATGTGAGCCAAGTCCTTGCAAAACGAACGTTCAAATTACTTGCGAATGTGGAAGGCTCAAAAAAGCAGCACCATGTTGCGAAGTAGACAAACTGATTGAAGCGAAACAGGAGAAGGAGGAAACCGAGAAATCAGGAGATTCTGGAGATTCTGGAGACCAGGATAAGCCTGGAAAACTTGTCAGATCATCAAGCTTCTCTCAACTGAACTGTATGAAGTGTGACGACGATTGCAAGAAGCTGGAGAGAAATCGAAAGGTGGCTGAAGCTCTAGAAGTCGATACCGATGAGTATGGAATGAACAAACTGACGCCTACTATCTCTTTCCCTTGCTATCTGAAAGCTATGGTTCGAGCAAACATAGATTTCGTCAAAAATGTTGAAAAGGTCTTTATTGATCTTGTTATCAAAGTGCTAAGCGTAAGATGTTTAAAAATTTATTCTAACCGAGAGGAAACCGAATTTATTACAGGGAGAAGCTTATCATGACGTCTTCCGTGCACACCTCCCCCCTATGAGCATTGAAAAACGTCGTTTCGTTCATGAATACGCCAATT</canonical>
            <polymorphic>TTTGTCATGCCGGACAGTGTCGTCCTTGTCTTCAAGCAAGCTTCGACGAACAGTTCTGTCACTGTGGACACACTGTTCGAATGCCACCGATTCCCTGTGGAGCTCGTCTTCCAGTATGCTCTCAACCGTGTGTCCGACCACATTCTTGCGATCATCCAGTCAATCATAAATGCCACGGAGAACCAAATTGTCCTCCTTGCACACATCTAACGGATAAAACTTGCTATGGAGGGCATACAGTTCGCAAGAACATACCATGCCATATTCAATCTGTATCCTGCGGAGTTATCTGTCAGAAGCCGTTGAAATGTGGTGTTCACGTTTGCCAAAGAACCTGCCATGGAGACGAATGTGAAAAGGAAGGAGAACAATGTACAAAGAAGTGTGAAGCGATTCGAGAGCGTTGTGAACATCCATGTGGTCTACCATGTCATAAAGACTCGCCATGTGAGCCAAGTCCTTGCAAAACGAACGTTCAAATTACTTGCGAATGTGGAAGRCTCAAAAAAGCAGCACCATGTTGCGAAGTAGACAAACTGATTGAAGCGAAACAGGAGAAGGAGGAAACCGAGAAATCAGGAGATTCTGGAGATTCTGGAGACCAGGATAAGCCTGGAAAACTTGTCAGATCATCAAGCTTCTCTCAACTGAACTGTATGAAGTGTGACGACGATTGCAAGAAGCTGGAGAGAAATCGAAAGGTGGCTGAAGCTCTAGAAGTCGATACCGATGAGTATGGAATGAACAAACTGACGCCTACTATCTCTTTCCCTTGCTATCTGAAAGCTATGGTTCGAGCAAACATAGATTTCGTCAAAAATGTTGAAAAGGTCTTTATTGATCTTGTTATCAAAGTGCTAAGCGTAAGATGTTTAAAAATTTATTCTAACCGAGAGGAAACCGAATTTATTACAGGGAGAAGCTTATCATGACGTCTTCCGTGCACACCTCCCCCCTATGAGCATTGAAAAACGTCGTTTCGTTCATGAATACGCCAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>197 153 136 111 78 75 62 48 46 40 26 22 6</canonical_bands>
                <polymorphic_bands>197 159 153 136 78 75 62 46 40 26 22 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGTCTACCATGTCATAAAGACT</pcr_primer_p1>
		<pcr_primer_p2>TCACACTTCATACAGTTCAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGGTCTACCATGTCATAAAGACTCGCCATGTGAGCCAAGTCCTTGCAAAACGAACGTTCAAATTACTTGCGAATGTGGAAGGCTCAAAAAAGCAGCACCATGTTGCGAAGTAGACAAACTGATTGAAGCGAAACAGGAGAAGGAGGAAACCGAGAAATCAGGAGATTCTGGAGATTCTGGAGACCAGGATAAGCCTGGAAAACTTGTCAGATCATCAAGCTTCTCTCAACTGAACTGTATGAAGTGTGA</canonical_amplicon>
		<polymorphic_amplicon>TGGTCTACCATGTCATAAAGACTCGCCATGTGAGCCAAGTCCTTGCAAAACGAACGTTCAAATTACTTGCGAATGTGGAAGRCTCAAAAAAGCAGCACCATGTTGCGAAGTAGACAAACTGATTGAAGCGAAACAGGAGAAGGAGGAAACCGAGAAATCAGGAGATTCTGGAGATTCTGGAGACCAGGATAAGCCTGGAAAACTTGTCAGATCATCAAGCTTCTCTCAACTGAACTGTATGAAGTGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36181</snp_id>
        <super_contig>c010801095.Contig3</super_contig>
        <contig_pos>103432</contig_pos>
        <strand>+</strand>
        <context>GTGACGACGA[C/T]TGCAAGAAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCAGATCATCAAGCTTCTCTCAACTGAACTGTATGAAGTGTGACGACGA</left_flank>
        <right_flank>TGCAAGAAGCTGGAGAGAAATCGAAAGGTGGCTGAAGCTCTAGAAGTCGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGGAGAACCAAATTGTCCTCCTTGCACACATCTAACGGATAAAACTTGCTATGGAGGGCATACAGTTCGCAAGAACATACCATGCCATATTCAATCTGTATCCTGCGGAGTTATCTGTCAGAAGCCGTTGAAATGTGGTGTTCACGTTTGCCAAAGAACCTGCCATGGAGACGAATGTGAAAAGGAAGGAGAACAATGTACAAAGAAGTGTGAAGCGATTCGAGAGCGTTGTGAACATCCATGTGGTCTACCATGTCATAAAGACTCGCCATGTGAGCCAAGTCCTTGCAAAACGAACGTTCAAATTACTTGCGAATGTGGAAGGCTCAAAAAAGCAGCACCATGTTGCGAAGTAGACAAACTGATTGAAGCGAAACAGGAGAAGGAGGAAACCGAGAAATCAGGAGATTCTGGAGATTCTGGAGACCAGGATAAGCCTGGAAAACTTGTCAGATCATCAAGCTTCTCTCAACTGAACTGTATGAAGTGTGACGACGATTGCAAGAAGCTGGAGAGAAATCGAAAGGTGGCTGAAGCTCTAGAAGTCGATACCGATGAGTATGGAATGAACAAACTGACGCCTACTATCTCTTTCCCTTGCTATCTGAAAGCTATGGTTCGAGCAAACATAGATTTCGTCAAAAATGTTGAAAAGGTCTTTATTGATCTTGTTATCAAAGTGCTAAGCGTAAGATGTTTAAAAATTTATTCTAACCGAGAGGAAACCGAATTTATTACAGGGAGAAGCTTATCATGACGTCTTCCGTGCACACCTCCCCCCTATGAGCATTGAAAAACGTCGTTTCGTTCATGAATACGCCAATTTCTTCAATATCGTCTCTGAAAGTGTCGATAGTCCACCGAAAAGAAGCATTGTGCTGACAGCAGTACGTGGAAAGTCACATCAACCACTAATTCTCATCAGCGACCTTGTCAACTACAAGGGAGCTTTGAAGGCTCCAGGTCCAGCTGTGGTCCGTAAGGATTTAATGGATCAAG</canonical>
            <polymorphic>ACGGAGAACCAAATTGTCCTCCTTGCACACATCTAACGGATAAAACTTGCTATGGAGGGCATACAGTTCGCAAGAACATACCATGCCATATTCAATCTGTATCCTGCGGAGTTATCTGTCAGAAGCCGTTGAAATGTGGTGTTCACGTTTGCCAAAGAACCTGCCATGGAGACGAATGTGAAAAGGAAGGAGAACAATGTACAAAGAAGTGTGAAGCGATTCGAGAGCGTTGTGAACATCCATGTGGTCTACCATGTCATAAAGACTCGCCATGTGAGCCAAGTCCTTGCAAAACGAACGTTCAAATTACTTGCGAATGTGGAAGGCTCAAAAAAGCAGCACCATGTTGCGAAGTAGACAAACTGATTGAAGCGAAACAGGAGAAGGAGGAAACCGAGAAATCAGGAGATTCTGGAGATTCTGGAGACCAGGATAAGCCTGGAAAACTTGTCAGATCATCAAGCTTCTCTCAACTGAACTGTATGAAGTGTGACGACGAYTGCAAGAAGCTGGAGAGAAATCGAAAGGTGGCTGAAGCTCTAGAAGTCGATACCGATGAGTATGGAATGAACAAACTGACGCCTACTATCTCTTTCCCTTGCTATCTGAAAGCTATGGTTCGAGCAAACATAGATTTCGTCAAAAATGTTGAAAAGGTCTTTATTGATCTTGTTATCAAAGTGCTAAGCGTAAGATGTTTAAAAATTTATTCTAACCGAGAGGAAACCGAATTTATTACAGGGAGAAGCTTATCATGACGTCTTCCGTGCACACCTCCCCCCTATGAGCATTGAAAAACGTCGTTTCGTTCATGAATACGCCAATTTCTTCAATATCGTCTCTGAAAGTGTCGATAGTCCACCGAAAAGAAGCATTGTGCTGACAGCAGTACGTGGAAAGTCACATCAACCACTAATTCTCATCAGCGACCTTGTCAACTACAAGGGAGCTTTGAAGGCTCCAGGTCCAGCTGTGGTCCGTAAGGATTTAATGGATCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAAGTAGACAAACTGATTGAAG</pcr_primer_p1>
		<pcr_primer_p2>AAAGAGATAGTAGGCGTCAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CGAAGTAGACAAACTGATTGAAGCGAAACAGGAGAAGGAGGAAACCGAGAAATCAGGAGATTCTGGAGATTCTGGAGACCAGGATAAGCCTGGAAAACTTGTCAGATCATCAAGCTTCTCTCAACTGAACTGTATGAAGTGTGACGACGATTGCAAGAAGCTGGAGAGAAATCGAAAGGTGGCTGAAGCTCTAGAAGTCGATACCGATGAGTATGGAATGAACAAACTGACGCCTACTATCTCTTT</canonical_amplicon>
		<polymorphic_amplicon>CGAAGTAGACAAACTGATTGAAGCGAAACAGGAGAAGGAGGAAACCGAGAAATCAGGAGATTCTGGAGATTCTGGAGACCAGGATAAGCCTGGAAAACTTGTCAGATCATCAAGCTTCTCTCAACTGAACTGTATGAAGTGTGACGACGAYTGCAAGAAGCTGGAGAGAAATCGAAAGGTGGCTGAAGCTCTAGAAGTCGATACCGATGAGTATGGAATGAACAAACTGACGCCTACTATCTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36182</snp_id>
        <super_contig>c010801095.Contig3</super_contig>
        <contig_pos>120979</contig_pos>
        <strand>+</strand>
        <context>TTTCAACGTC[A/G]CCATAGATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAACTTCTTCCTGTCCTCACACATCCCTTCGCAGAACGGTTTCAACGTC</left_flank>
        <right_flank>CCATAGATGATGGCTGAGCGAGAAGAACAAAAAGATACGAGTGACACGTG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGCTAGATGCCGCGGAGCTAATTGGGCACTTGTGATGAGGTGACACGTGAAAAGCCGCACACACTTCAGATGACATTGGAGAGTGGAGAGAAGAAGCACGATGGTATTTGCCACGTCGCTGGTCCATTGTACGGTTCTGACTGGCGTCTTTCATCAGGATATGATAGGCATAGGGAAGATCATAGCAAGATGAGACAGTGGACAGAGCAGAGAGACGCAGACCGTGTTGTTGTTTGAAGAGTTCGAGTCTTTAAAAAAATTAAATATTGCAAGCCGCGCCCCTTGGTTTGGTGAAAAGCGGGCCGTTTAAGTATAACATTGGCACGGAGAGTGGCAATGCGGCCGCGTAGCGCAGGCGGTAGGTCGCGCGCTTGTTGCGCCGCCGAGTTTTGCTTGCGGGTTCAATTCCTCTAGAGGGAAATTGAAGCCCAAAAGCATTTTGCTTACCTAAACTTCTTCCTGTCCTCACACATCCCTTCGCAGAACGGTTTCAACGTCACCATAGATGATGGCTGAGCGAGAAGAACAAAAAGATACGAGTGACACGTGGACGGCTTCTTTGGAATCAAAGGGACATAGTCGGCTTTCTGAAAAGTGAATTTTGAAATTGGATTTGATTTGGGCAAAGTGGCCATATCGAGGGTCCCCTGAATTCAATTGAATTTGGGTGCGCTACACATTCGTTCTTGATTTTTTGAAGCGTAAAATTTCATGAAACAAAAAGTTTTTGATGAAAAAAAAGGAAAAGTTTGTGGGAGTCATCTAATGGATAGATGCGCCCAAACACACATTCGTACCAGTTTTGATGAGTTTTTTGTTTGGCGCCAAAACGCTAGAATTCTTTATGTTTCACTTCGAATGCTTGCTCTCACCGTTTGGCCATTTCCGTTGGCTGCATTTAGATTGGCAGCTGGAATGTCAACTTCCAGCCAGTGGAGGTGGCCGTGATGAGCGTCGATTATGGCCAAAGTGAACTTTTCGTTGGAGAGTTCTGAAATT</canonical>
            <polymorphic>GAGCTAGATGCCGCGGAGCTAATTGGGCACTTGTGATGAGGTGACACGTGAAAAGCCGCACACACTTCAGATGACATTGGAGAGTGGAGAGAAGAAGCACGATGGTATTTGCCACGTCGCTGGTCCATTGTACGGTTCTGACTGGCGTCTTTCATCAGGATATGATAGGCATAGGGAAGATCATAGCAAGATGAGACAGTGGACAGAGCAGAGAGACGCAGACCGTGTTGTTGTTTGAAGAGTTCGAGTCTTTAAAAAAATTAAATATTGCAAGCCGCGCCCCTTGGTTTGGTGAAAAGCGGGCCGTTTAAGTATAACATTGGCACGGAGAGTGGCAATGCGGCCGCGTAGCGCAGGCGGTAGGTCGCGCGCTTGTTGCGCCGCCGAGTTTTGCTTGCGGGTTCAATTCCTCTAGAGGGAAATTGAAGCCCAAAAGCATTTTGCTTACCTAAACTTCTTCCTGTCCTCACACATCCCTTCGCAGAACGGTTTCAACGTCRCCATAGATGATGGCTGAGCGAGAAGAACAAAAAGATACGAGTGACACGTGGACGGCTTCTTTGGAATCAAAGGGACATAGTCGGCTTTCTGAAAAGTGAATTTTGAAATTGGATTTGATTTGGGCAAAGTGGCCATATCGAGGGTCCCCTGAATTCAATTGAATTTGGGTGCGCTACACATTCGTTCTTGATTTTTTGAAGCGTAAAATTTCATGAAACAAAAAGTTTTTGATGAAAAAAAAGGAAAAGTTTGTGGGAGTCATCTAATGGATAGATGCGCCCAAACACACATTCGTACCAGTTTTGATGAGTTTTTTGTTTGGCGCCAAAACGCTAGAATTCTTTATGTTTCACTTCGAATGCTTGCTCTCACCGTTTGGCCATTTCCGTTGGCTGCATTTAGATTGGCAGCTGGAATGTCAACTTCCAGCCAGTGGAGGTGGCCGTGATGAGCGTCGATTATGGCCAAAGTGAACTTTTCGTTGGAGAGTTCTGAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>135 87 77 67 64 64 48 43 40 33 32 31 29 29 27 26 25 22 19 15 13 10 9 8 7 6 6 6 4 4 3 3 2 2 2 2</canonical_bands>
                <polymorphic_bands>135 87 77 72 67 64 64 48 40 33 32 31 29 27 26 25 22 19 15 13 10 9 8 7 6 6 6 4 4 3 3 2 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>460 456 44 40</canonical_bands>
                <polymorphic_bands>500 460 40</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>460 456 44 40</canonical_bands>
                <polymorphic_bands>500 460 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTACCTAAACTTCTTCCTGTCC</pcr_primer_p1>
		<pcr_primer_p2>AAATCAAGAACGAATGTGTAGC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTTACCTAAACTTCTTCCTGTCCTCACACATCCCTTCGCAGAACGGTTTCAACGTCACCATAGATGATGGCTGAGCGAGAAGAACAAAAAGATACGAGTGACACGTGGACGGCTTCTTTGGAATCAAAGGGACATAGTCGGCTTTCTGAAAAGTGAATTTTGAAATTGGATTTGATTTGGGCAAAGTGGCCATATCGAGGGTCCCCTGAATTCAATTGAATTTGGGTGCGCTACACATTCGTTCTTGATTT</canonical_amplicon>
		<polymorphic_amplicon>CTTACCTAAACTTCTTCCTGTCCTCACACATCCCTTCGCAGAACGGTTTCAACGTCRCCATAGATGATGGCTGAGCGAGAAGAACAAAAAGATACGAGTGACACGTGGACGGCTTCTTTGGAATCAAAGGGACATAGTCGGCTTTCTGAAAAGTGAATTTTGAAATTGGATTTGATTTGGGCAAAGTGGCCATATCGAGGGTCCCCTGAATTCAATTGAATTTGGGTGCGCTACACATTCGTTCTTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36183</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>43325</contig_pos>
        <strand></strand>
        <context>gaaggccata[G/A]tttctctttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAACTAAAAAAATGTGTGAAATTTAATTTTACATATTTTTGAAGGCCATA</left_flank>
        <right_flank>TTTCTCTTTTGCTATTACTGTTTTTGAGATATGCGCCTTTAATGATTGAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATACCTTTAATAGGAACCGAGATAATTGAGCTCAAAGTTCATGTCAACTGTTTCGGAGGTACCTTTTGTACGGATAAATGAAACATAAAAAAGACAGCTGAAAGCTCAGAAAACTAACGAATCTGAAATTTTCAGGAAAATTGAATATTCTCTCAAGAAGTGGAAAAATGGAAAAAGTGGTGGATGCTCATAATGGAGCAGCGTTGTGTTGTCGTTGGAATTCTGATGGGACCGGATTGTTGTCATGTGGGTTTTCTGGAATTACAGTATGCATTTTGATGTGATGGTGTGCAGTTTTACAAATTTTCATAGTTTACAATTTTCCTAGCTGTAACGCTTTAAATTTATGAGGAGACGCAGAGAAGCGAGAGCGCTCGCACTCCTCTGCGTCTCTCTTTGGCTTTAACGGCACATATCTCAAGAACCAGCAGAATTGTCAAGTAGTTGTAAACTAAAAAAATGTGTGAAATTTAATTTTACATATTTTTGAAGGCCATAGTTTCTCTTTTGCTATTACTGTTTTTGAGATATGCGCCTTTAATGATTGAGCGACTCTTTTACTGGGGGTCCTAGTAGAGGGGACGCGCTAACTTTAAAGGCGGATATCTCAAGAACCAGCAGAATTATCAAAAAGTTGTAAACTACAAAAGTAAGTAAAATTTTATGGTGAGCAATTTTTGAGTCGACTATTTTATTCTAGCTTTCTTAGTTTTTAAGATATGCTCCTTTAAAGTTATTGCGCCTCCTCTAATGGGGTGCGCTAACTTTAAAGGCGCATACCTTAAGAACCAGGAGAAGAATCACAAATTTTTAAACTACAAAAATAAGTACAGTTTTTTTTGAGCAGTTTTTGTAATTGTTAGTTTCTTTATCGCTTTTACTAGTCTTGGGATATGCACCTTCAAAATAAGAGCGCCCTAGTAGAGGAGGAGCGCTAACTGTAAAGGCGCATATCTCAAGAATCAGCACAACTATCAAAAAGTTGTGAACTACTAAAAT</canonical>
            <polymorphic>AATACCTTTAATAGGAACCGAGATAATTGAGCTCAAAGTTCATGTCAACTGTTTCGGAGGTACCTTTTGTACGGATAAATGAAACATAAAAAAGACAGCTGAAAGCTCAGAAAACTAACGAATCTGAAATTTTCAGGAAAATTGAATATTCTCTCAAGAAGTGGAAAAATGGAAAAAGTGGTGGATGCTCATAATGGAGCAGCGTTGTGTTGTCGTTGGAATTCTGATGGGACCGGATTGTTGTCATGTGGGTTTTCTGGAATTACAGTATGCATTTTGATGTGATGGTGTGCAGTTTTACAAATTTTCATAGTTTACAATTTTCCTAGCTGTAACGCTTTAAATTTATGAGGAGACGCAGAGAAGCGAGAGCGCTCGCACTCCTCTGCGTCTCTCTTTGGCTTTAACGGCACATATCTCAAGAACCAGCAGAATTGTCAAGTAGTTGTAAACTAAAAAAATGTGTGAAATTTAATTTTACATATTTTTGAAGGCCATARTTTCTCTTTTGCTATTACTGTTTTTGAGATATGCGCCTTTAATGATTGAGCGACTCTTTTACTGGGGGTCCTAGTAGAGGGGACGCGCTAACTTTAAAGGCGGATATCTCAAGAACCAGCAGAATTATCAAAAAGTTGTAAACTACAAAAGTAAGTAAAATTTTATGGTGAGCAATTTTTGAGTCGACTATTTTATTCTAGCTTTCTTAGTTTTTAAGATATGCTCCTTTAAAGTTATTGCGCCTCCTCTAATGGGGTGCGCTAACTTTAAAGGCGCATACCTTAAGAACCAGGAGAAGAATCACAAATTTTTAAACTACAAAAATAAGTACAGTTTTTTTTGAGCAGTTTTTGTAATTGTTAGTTTCTTTATCGCTTTTACTAGTCTTGGGATATGCACCTTCAAAATAAGAGCGCCCTAGTAGAGGAGGAGCGCTAACTGTAAAGGCGCATATCTCAAGAATCAGCACAACTATCAAAAAGTTGTGAACTACTAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTTGATGTGATGGTGTG</pcr_primer_p1>
		<pcr_primer_p2>TAGGACAGAACGGAGCATAC</pcr_primer_p2>
		<pcr_amplicon_size>881</pcr_amplicon_size>
		<canonical_amplicon>CATTTTGATGTGATGGTGTGCAGTTTTACAAATTTTCATAGTTTACAATTTTCCTAGCTGTAACGCTTTAAATTTATGAGGAGACGCAGAGAAGCGAGAGCGCTCGCACTCCTCTGCGTCTCTCTTTGGCTTTAACGGCACATATCTCAAGAACCAGCAGAATTGTCAAGTAGTTGTAAACTAAAAAAATGTGTGAAATTTAATTTTACATATTTTTGAAGGCCATAGTTTCTCTTTTGCTATTACT</canonical_amplicon>
		<polymorphic_amplicon>CATTTTGATGTGATGGTGTGCAGTTTTACAAATTTTCATAGTTTACAATTTTCCTAGCTGTAACGCTTTAAATTTATGAGGAGACGCAGAGAAGCGAGAGCGCTCGCACTCCTCTGCGTCTCTCTTTGGCTTTAACGGCACATATCTCAAGAACCAGCAGAATTGTCAAGTAGTTGTAAACTAAAAAAATGTGTGAAATTTAATTTTACATATTTTTGAAGGCCATARTTTCTCTTTTGCTATTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36184</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>43374</contig_pos>
        <strand></strand>
        <context>ttaatgattg[A/C]gcgactcttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTTTCTCTTTTGCTATTACTGTTTTTGAGATATGCGCCTTTAATGATTG</left_flank>
        <right_flank>GCGACTCTTTTACTGGGGGTCCTAGTAGAGGGGACGCGCTAACTTTAAAG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTCGGAGGTACCTTTTGTACGGATAAATGAAACATAAAAAAGACAGCTGAAAGCTCAGAAAACTAACGAATCTGAAATTTTCAGGAAAATTGAATATTCTCTCAAGAAGTGGAAAAATGGAAAAAGTGGTGGATGCTCATAATGGAGCAGCGTTGTGTTGTCGTTGGAATTCTGATGGGACCGGATTGTTGTCATGTGGGTTTTCTGGAATTACAGTATGCATTTTGATGTGATGGTGTGCAGTTTTACAAATTTTCATAGTTTACAATTTTCCTAGCTGTAACGCTTTAAATTTATGAGGAGACGCAGAGAAGCGAGAGCGCTCGCACTCCTCTGCGTCTCTCTTTGGCTTTAACGGCACATATCTCAAGAACCAGCAGAATTGTCAAGTAGTTGTAAACTAAAAAAATGTGTGAAATTTAATTTTACATATTTTTGAAGGCCATAGTTTCTCTTTTGCTATTACTGTTTTTGAGATATGCGCCTTTAATGATTGAGCGACTCTTTTACTGGGGGTCCTAGTAGAGGGGACGCGCTAACTTTAAAGGCGGATATCTCAAGAACCAGCAGAATTATCAAAAAGTTGTAAACTACAAAAGTAAGTAAAATTTTATGGTGAGCAATTTTTGAGTCGACTATTTTATTCTAGCTTTCTTAGTTTTTAAGATATGCTCCTTTAAAGTTATTGCGCCTCCTCTAATGGGGTGCGCTAACTTTAAAGGCGCATACCTTAAGAACCAGGAGAAGAATCACAAATTTTTAAACTACAAAAATAAGTACAGTTTTTTTTGAGCAGTTTTTGTAATTGTTAGTTTCTTTATCGCTTTTACTAGTCTTGGGATATGCACCTTCAAAATAAGAGCGCCCTAGTAGAGGAGGAGCGCTAACTGTAAAGGCGCATATCTCAAGAATCAGCACAACTATCAAAAAGTTGTGAACTACTAAAATGTGTGAAATGTTTTTGACACATTTTTGTAGTTATCTATTTTCTTTCAGC</canonical>
            <polymorphic>TGTTTCGGAGGTACCTTTTGTACGGATAAATGAAACATAAAAAAGACAGCTGAAAGCTCAGAAAACTAACGAATCTGAAATTTTCAGGAAAATTGAATATTCTCTCAAGAAGTGGAAAAATGGAAAAAGTGGTGGATGCTCATAATGGAGCAGCGTTGTGTTGTCGTTGGAATTCTGATGGGACCGGATTGTTGTCATGTGGGTTTTCTGGAATTACAGTATGCATTTTGATGTGATGGTGTGCAGTTTTACAAATTTTCATAGTTTACAATTTTCCTAGCTGTAACGCTTTAAATTTATGAGGAGACGCAGAGAAGCGAGAGCGCTCGCACTCCTCTGCGTCTCTCTTTGGCTTTAACGGCACATATCTCAAGAACCAGCAGAATTGTCAAGTAGTTGTAAACTAAAAAAATGTGTGAAATTTAATTTTACATATTTTTGAAGGCCATAGTTTCTCTTTTGCTATTACTGTTTTTGAGATATGCGCCTTTAATGATTGMGCGACTCTTTTACTGGGGGTCCTAGTAGAGGGGACGCGCTAACTTTAAAGGCGGATATCTCAAGAACCAGCAGAATTATCAAAAAGTTGTAAACTACAAAAGTAAGTAAAATTTTATGGTGAGCAATTTTTGAGTCGACTATTTTATTCTAGCTTTCTTAGTTTTTAAGATATGCTCCTTTAAAGTTATTGCGCCTCCTCTAATGGGGTGCGCTAACTTTAAAGGCGCATACCTTAAGAACCAGGAGAAGAATCACAAATTTTTAAACTACAAAAATAAGTACAGTTTTTTTTGAGCAGTTTTTGTAATTGTTAGTTTCTTTATCGCTTTTACTAGTCTTGGGATATGCACCTTCAAAATAAGAGCGCCCTAGTAGAGGAGGAGCGCTAACTGTAAAGGCGCATATCTCAAGAATCAGCACAACTATCAAAAAGTTGTGAACTACTAAAATGTGTGAAATGTTTTTGACACATTTTTGTAGTTATCTATTTTCTTTCAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTTGATGTGATGGTGTG</pcr_primer_p1>
		<pcr_primer_p2>TAGGACAGAACGGAGCATAC</pcr_primer_p2>
		<pcr_amplicon_size>881</pcr_amplicon_size>
		<canonical_amplicon>CATTTTGATGTGATGGTGTGCAGTTTTACAAATTTTCATAGTTTACAATTTTCCTAGCTGTAACGCTTTAAATTTATGAGGAGACGCAGAGAAGCGAGAGCGCTCGCACTCCTCTGCGTCTCTCTTTGGCTTTAACGGCACATATCTCAAGAACCAGCAGAATTGTCAAGTAGTTGTAAACTAAAAAAATGTGTGAAATTTAATTTTACATATTTTTGAAGGCCATAGTTTCTCTTTTGCTATTACTGTTTTTGAGATATGCGCCTTTAATGATTGAGCGACTCTTTTACTGGGGG</canonical_amplicon>
		<polymorphic_amplicon>CATTTTGATGTGATGGTGTGCAGTTTTACAAATTTTCATAGTTTACAATTTTCCTAGCTGTAACGCTTTAAATTTATGAGGAGACGCAGAGAAGCGAGAGCGCTCGCACTCCTCTGCGTCTCTCTTTGGCTTTAACGGCACATATCTCAAGAACCAGCAGAATTGTCAAGTAGTTGTAAACTAAAAAAATGTGTGAAATTTAATTTTACATATTTTTGAAGGCCATAGTTTCTCTTTTGCTATTACTGTTTTTGAGATATGCGCCTTTAATGATTGMGCGACTCTTTTACTGGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36185</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>45648</contig_pos>
        <strand>+</strand>
        <context>GAGTTTTACC[C/G]CCCGATATCC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACCGAACGAACTGTCAATATAATTGTGCAATGTGAAAAGTGAGTTTTACC</left_flank>
        <right_flank>CCCGATATCCATGTATCCAGATGTCCTCCCCAGAATCTTCCTTGTCTCTG</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGGCGCCGCAAGGGACGCCAAGGAAGCGTGGTTACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATAGCACAATTGTGTACACTGATAAAATATTTAACATATTATCGGCTACATTTTATTAGTTGACACATTTTTCATATCTCTGGTAGGCACCGCGATAATGGAGCTCAACGTGCGCGGCTCGGTCAGCTGCCTGCGTCACCACCTTAAACGCTTTGAGCTCAATTATTTCGGTTTTTAAAAGAGATATTAAAAATATGTCAATTGATAAAATATTTCTGATATTATCAGCTACATTTTATCAGTTGACCCATTTTTTATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTTTTTTGTCGAAAAGAAAATAACTTCCAATTCAAAAATTCAAAACTTGCAGCTCAAAAAACTGGAATACCCCTACCATGATCGAGAACACCGAACGAACTGTCAATATAATTGTGCAATGTGAAAAGTGAGTTTTACCGCCCGATATCCATGTATCCAGATGTCCTCCCCAGAATCTTCCTTGTCTCTGATGGCTTAACAATCACAACGTTCACCTATGAAGGTCGTAAACTGATCAATTTGAATCCTCCAGGACAGGTGATGGCACTTTTGGATGAGCGGAAAATTGATTTGGCAAATGATACACTGGTGGTTAGGGACAGGGCGGATAATAAGGTTTTGCACTTTTTCGATCCGACTACAGGAAAGGCACAAGGAGATGGGAACTTGAAACATGAGGTGGGACTTTTTAGAGGAAATCAGACCATTGGGAATTTCGTTGTGCCGTTTTTCCCGTAAATTCGTTCAAGGAGATTTTCCGGAGCCTTTTATTGTCACCGTTGCTCATCTAACTTTGAACCAACTTGTCTCATTTCCTGTGAAAGATATCAAAAAGTGGTCAACTGATAAAATGATTATCATAATATCACCAATAGTTTACTAGTTGACATAATTCTTATATCTTTCACAGGAAATGATA</canonical>
            <polymorphic>TGGGCGCCGCAAGGGACGCCAAGGAAGCGTGGTTACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATAGCACAATTGTGTACACTGATAAAATATTTAACATATTATCGGCTACATTTTATTAGTTGACACATTTTTCATATCTCTGGTAGGCACCGCGATAATGGAGCTCAACGTGCGCGGCTCGGTCAGCTGCCTGCGTCACCACCTTAAACGCTTTGAGCTCAATTATTTCGGTTTTTAAAAGAGATATTAAAAATATGTCAATTGATAAAATATTTCTGATATTATCAGCTACATTTTATCAGTTGACCCATTTTTTATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTTTTTTGTCGAAAAGAAAATAACTTCCAATTCAAAAATTCAAAACTTGCAGCTCAAAAAACTGGAATACCCCTACCATGATCGAGAACACCGAACGAACTGTCAATATAATTGTGCAATGTGAAAAGTGAGTTTTACCSCCCGATATCCATGTATCCAGATGTCCTCCCCAGAATCTTCCTTGTCTCTGATGGCTTAACAATCACAACGTTCACCTATGAAGGTCGTAAACTGATCAATTTGAATCCTCCAGGACAGGTGATGGCACTTTTGGATGAGCGGAAAATTGATTTGGCAAATGATACACTGGTGGTTAGGGACAGGGCGGATAATAAGGTTTTGCACTTTTTCGATCCGACTACAGGAAAGGCACAAGGAGATGGGAACTTGAAACATGAGGTGGGACTTTTTAGAGGAAATCAGACCATTGGGAATTTCGTTGTGCCGTTTTTCCCGTAAATTCGTTCAAGGAGATTTTCCGGAGCCTTTTATTGTCACCGTTGCTCATCTAACTTTGAACCAACTTGTCTCATTTCCTGTGAAAGATATCAAAAAGTGGTCAACTGATAAAATGATTATCATAATATCACCAATAGTTTACTAGTTGACATAATTCTTATATCTTTCACAGGAAATGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>340 316 186 151 7</canonical_bands>
                <polymorphic_bands>526 316 151 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGTCGAAAAGAAAATAACTT</pcr_primer_p1>
		<pcr_primer_p2>TGATCAGTTTACGACCTTCATAG</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>TTTTGTCGAAAAGAAAATAACTTCCAATTCAAAAATTCAAAACTTGCAGCTCAAAAAACTGGAATACCCCTACCATGATCGAGAACACCGAACGAACTGTCAATATAATTGTGCAATGTGAAAAGTGAGTTTTACCGCCCGATATCCATGTATCCAGATGTCCTCCCCAGAATCTTCCTTGTCTCTGATGGCTTAACAATCACAACGTTCACCTATGAAGGTCGTAAACTGATCA</canonical_amplicon>
		<polymorphic_amplicon>TTTTGTCGAAAAGAAAATAACTTCCAATTCAAAAATTCAAAACTTGCAGCTCAAAAAACTGGAATACCCCTACCATGATCGAGAACACCGAACGAACTGTCAATATAATTGTGCAATGTGAAAAGTGAGTTTTACCSCCCGATATCCATGTATCCAGATGTCCTCCCCAGAATCTTCCTTGTCTCTGATGGCTTAACAATCACAACGTTCACCTATGAAGGTCGTAAACTGATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36186</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>45677</contig_pos>
        <strand>+</strand>
        <context>AGATGTCCTC[C/T]CCAGAATCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGTGAAAAGTGAGTTTTACCGCCCGATATCCATGTATCCAGATGTCCTC</left_flank>
        <right_flank>CCAGAATCTTCCTTGTCTCTGATGGCTTAACAATCACAACGTTCACCTAT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTTACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATAGCACAATTGTGTACACTGATAAAATATTTAACATATTATCGGCTACATTTTATTAGTTGACACATTTTTCATATCTCTGGTAGGCACCGCGATAATGGAGCTCAACGTGCGCGGCTCGGTCAGCTGCCTGCGTCACCACCTTAAACGCTTTGAGCTCAATTATTTCGGTTTTTAAAAGAGATATTAAAAATATGTCAATTGATAAAATATTTCTGATATTATCAGCTACATTTTATCAGTTGACCCATTTTTTATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTTTTTTGTCGAAAAGAAAATAACTTCCAATTCAAAAATTCAAAACTTGCAGCTCAAAAAACTGGAATACCCCTACCATGATCGAGAACACCGAACGAACTGTCAATATAATTGTGCAATGTGAAAAGTGAGTTTTACCGCCCGATATCCATGTATCCAGATGTCCTCCCCAGAATCTTCCTTGTCTCTGATGGCTTAACAATCACAACGTTCACCTATGAAGGTCGTAAACTGATCAATTTGAATCCTCCAGGACAGGTGATGGCACTTTTGGATGAGCGGAAAATTGATTTGGCAAATGATACACTGGTGGTTAGGGACAGGGCGGATAATAAGGTTTTGCACTTTTTCGATCCGACTACAGGAAAGGCACAAGGAGATGGGAACTTGAAACATGAGGTGGGACTTTTTAGAGGAAATCAGACCATTGGGAATTTCGTTGTGCCGTTTTTCCCGTAAATTCGTTCAAGGAGATTTTCCGGAGCCTTTTATTGTCACCGTTGCTCATCTAACTTTGAACCAACTTGTCTCATTTCCTGTGAAAGATATCAAAAAGTGGTCAACTGATAAAATGATTATCATAATATCACCAATAGTTTACTAGTTGACATAATTCTTATATCTTTCACAGGAAATGATATAAATTGGTTCAAAGTTAGCCGACCGATG</canonical>
            <polymorphic>TGGTTACTTTGAGCTCAATTATCTCGGTTCCTATAAGAGATAGCACAATTGTGTACACTGATAAAATATTTAACATATTATCGGCTACATTTTATTAGTTGACACATTTTTCATATCTCTGGTAGGCACCGCGATAATGGAGCTCAACGTGCGCGGCTCGGTCAGCTGCCTGCGTCACCACCTTAAACGCTTTGAGCTCAATTATTTCGGTTTTTAAAAGAGATATTAAAAATATGTCAATTGATAAAATATTTCTGATATTATCAGCTACATTTTATCAGTTGACCCATTTTTTATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTTTTTTGTCGAAAAGAAAATAACTTCCAATTCAAAAATTCAAAACTTGCAGCTCAAAAAACTGGAATACCCCTACCATGATCGAGAACACCGAACGAACTGTCAATATAATTGTGCAATGTGAAAAGTGAGTTTTACCGCCCGATATCCATGTATCCAGATGTCCTCYCCAGAATCTTCCTTGTCTCTGATGGCTTAACAATCACAACGTTCACCTATGAAGGTCGTAAACTGATCAATTTGAATCCTCCAGGACAGGTGATGGCACTTTTGGATGAGCGGAAAATTGATTTGGCAAATGATACACTGGTGGTTAGGGACAGGGCGGATAATAAGGTTTTGCACTTTTTCGATCCGACTACAGGAAAGGCACAAGGAGATGGGAACTTGAAACATGAGGTGGGACTTTTTAGAGGAAATCAGACCATTGGGAATTTCGTTGTGCCGTTTTTCCCGTAAATTCGTTCAAGGAGATTTTCCGGAGCCTTTTATTGTCACCGTTGCTCATCTAACTTTGAACCAACTTGTCTCATTTCCTGTGAAAGATATCAAAAAGTGGTCAACTGATAAAATGATTATCATAATATCACCAATAGTTTACTAGTTGACATAATTCTTATATCTTTCACAGGAAATGATATAAATTGGTTCAAAGTTAGCCGACCGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAATATAATTGTGCAATGTGA</pcr_primer_p1>
		<pcr_primer_p2>AAAAGTGCAAAACCTTATTATCC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTCAATATAATTGTGCAATGTGAAAAGTGAGTTTTACCGCCCGATATCCATGTATCCAGATGTCCTCCCCAGAATCTTCCTTGTCTCTGATGGCTTAACAATCACAACGTTCACCTATGAAGGTCGTAAACTGATCAATTTGAATCCTCCAGGACAGGTGATGGCACTTTTGGATGAGCGGAAAATTGATTTGGCAAATGATACACTGGTGGTTAGGGACAGGGCGGATAATAAGGTTTTGCACTTTT</canonical_amplicon>
		<polymorphic_amplicon>GTCAATATAATTGTGCAATGTGAAAAGTGAGTTTTACCGCCCGATATCCATGTATCCAGATGTCCTCYCCAGAATCTTCCTTGTCTCTGATGGCTTAACAATCACAACGTTCACCTATGAAGGTCGTAAACTGATCAATTTGAATCCTCCAGGACAGGTGATGGCACTTTTGGATGAGCGGAAAATTGATTTGGCAAATGATACACTGGTGGTTAGGGACAGGGCGGATAATAAGGTTTTGCACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36187</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>45697</contig_pos>
        <strand>+</strand>
        <context>TCCTTGTCTC[C/T]GATGGCTTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGCCCGATATCCATGTATCCAGATGTCCTCCCCAGAATCTTCCTTGTCTC</left_flank>
        <right_flank>GATGGCTTAACAATCACAACGTTCACCTATGAAGGTCGTAAACTGATCAA</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTCGGTTCCTATAAGAGATAGCACAATTGTGTACACTGATAAAATATTTAACATATTATCGGCTACATTTTATTAGTTGACACATTTTTCATATCTCTGGTAGGCACCGCGATAATGGAGCTCAACGTGCGCGGCTCGGTCAGCTGCCTGCGTCACCACCTTAAACGCTTTGAGCTCAATTATTTCGGTTTTTAAAAGAGATATTAAAAATATGTCAATTGATAAAATATTTCTGATATTATCAGCTACATTTTATCAGTTGACCCATTTTTTATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTTTTTTGTCGAAAAGAAAATAACTTCCAATTCAAAAATTCAAAACTTGCAGCTCAAAAAACTGGAATACCCCTACCATGATCGAGAACACCGAACGAACTGTCAATATAATTGTGCAATGTGAAAAGTGAGTTTTACCGCCCGATATCCATGTATCCAGATGTCCTCCCCAGAATCTTCCTTGTCTCTGATGGCTTAACAATCACAACGTTCACCTATGAAGGTCGTAAACTGATCAATTTGAATCCTCCAGGACAGGTGATGGCACTTTTGGATGAGCGGAAAATTGATTTGGCAAATGATACACTGGTGGTTAGGGACAGGGCGGATAATAAGGTTTTGCACTTTTTCGATCCGACTACAGGAAAGGCACAAGGAGATGGGAACTTGAAACATGAGGTGGGACTTTTTAGAGGAAATCAGACCATTGGGAATTTCGTTGTGCCGTTTTTCCCGTAAATTCGTTCAAGGAGATTTTCCGGAGCCTTTTATTGTCACCGTTGCTCATCTAACTTTGAACCAACTTGTCTCATTTCCTGTGAAAGATATCAAAAAGTGGTCAACTGATAAAATGATTATCATAATATCACCAATAGTTTACTAGTTGACATAATTCTTATATCTTTCACAGGAAATGATATAAATTGGTTCAAAGTTAGCCGACCGATGCTTCCGCTACCGTAGCTCAG</canonical>
            <polymorphic>ATCTCGGTTCCTATAAGAGATAGCACAATTGTGTACACTGATAAAATATTTAACATATTATCGGCTACATTTTATTAGTTGACACATTTTTCATATCTCTGGTAGGCACCGCGATAATGGAGCTCAACGTGCGCGGCTCGGTCAGCTGCCTGCGTCACCACCTTAAACGCTTTGAGCTCAATTATTTCGGTTTTTAAAAGAGATATTAAAAATATGTCAATTGATAAAATATTTCTGATATTATCAGCTACATTTTATCAGTTGACCCATTTTTTATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTTTTTTGTCGAAAAGAAAATAACTTCCAATTCAAAAATTCAAAACTTGCAGCTCAAAAAACTGGAATACCCCTACCATGATCGAGAACACCGAACGAACTGTCAATATAATTGTGCAATGTGAAAAGTGAGTTTTACCGCCCGATATCCATGTATCCAGATGTCCTCCCCAGAATCTTCCTTGTCTCYGATGGCTTAACAATCACAACGTTCACCTATGAAGGTCGTAAACTGATCAATTTGAATCCTCCAGGACAGGTGATGGCACTTTTGGATGAGCGGAAAATTGATTTGGCAAATGATACACTGGTGGTTAGGGACAGGGCGGATAATAAGGTTTTGCACTTTTTCGATCCGACTACAGGAAAGGCACAAGGAGATGGGAACTTGAAACATGAGGTGGGACTTTTTAGAGGAAATCAGACCATTGGGAATTTCGTTGTGCCGTTTTTCCCGTAAATTCGTTCAAGGAGATTTTCCGGAGCCTTTTATTGTCACCGTTGCTCATCTAACTTTGAACCAACTTGTCTCATTTCCTGTGAAAGATATCAAAAAGTGGTCAACTGATAAAATGATTATCATAATATCACCAATAGTTTACTAGTTGACATAATTCTTATATCTTTCACAGGAAATGATATAAATTGGTTCAAAGTTAGCCGACCGATGCTTCCGCTACCGTAGCTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAATATAATTGTGCAATGTGA</pcr_primer_p1>
		<pcr_primer_p2>AAAAGTGCAAAACCTTATTATCC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTCAATATAATTGTGCAATGTGAAAAGTGAGTTTTACCGCCCGATATCCATGTATCCAGATGTCCTCCCCAGAATCTTCCTTGTCTCTGATGGCTTAACAATCACAACGTTCACCTATGAAGGTCGTAAACTGATCAATTTGAATCCTCCAGGACAGGTGATGGCACTTTTGGATGAGCGGAAAATTGATTTGGCAAATGATACACTGGTGGTTAGGGACAGGGCGGATAATAAGGTTTTGCACTTTT</canonical_amplicon>
		<polymorphic_amplicon>GTCAATATAATTGTGCAATGTGAAAAGTGAGTTTTACCGCCCGATATCCATGTATCCAGATGTCCTCCCCAGAATCTTCCTTGTCTCYGATGGCTTAACAATCACAACGTTCACCTATGAAGGTCGTAAACTGATCAATTTGAATCCTCCAGGACAGGTGATGGCACTTTTGGATGAGCGGAAAATTGATTTGGCAAATGATACACTGGTGGTTAGGGACAGGGCGGATAATAAGGTTTTGCACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36188</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>45964</contig_pos>
        <strand>+</strand>
        <context>CGTTTTTCCC[A/G]TAAATTCGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTTTAGAGGAAATCAGACCATTGGGAATTTCGTTGTGCCGTTTTTCCC</left_flank>
        <right_flank>TAAATTCGTTCAAGGAGATTTTCCGGAGCCTTTTATTGTCACCGTTGCTC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTTTTATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTTTTTTGTCGAAAAGAAAATAACTTCCAATTCAAAAATTCAAAACTTGCAGCTCAAAAAACTGGAATACCCCTACCATGATCGAGAACACCGAACGAACTGTCAATATAATTGTGCAATGTGAAAAGTGAGTTTTACCGCCCGATATCCATGTATCCAGATGTCCTCCCCAGAATCTTCCTTGTCTCTGATGGCTTAACAATCACAACGTTCACCTATGAAGGTCGTAAACTGATCAATTTGAATCCTCCAGGACAGGTGATGGCACTTTTGGATGAGCGGAAAATTGATTTGGCAAATGATACACTGGTGGTTAGGGACAGGGCGGATAATAAGGTTTTGCACTTTTTCGATCCGACTACAGGAAAGGCACAAGGAGATGGGAACTTGAAACATGAGGTGGGACTTTTTAGAGGAAATCAGACCATTGGGAATTTCGTTGTGCCGTTTTTCCCGTAAATTCGTTCAAGGAGATTTTCCGGAGCCTTTTATTGTCACCGTTGCTCATCTAACTTTGAACCAACTTGTCTCATTTCCTGTGAAAGATATCAAAAAGTGGTCAACTGATAAAATGATTATCATAATATCACCAATAGTTTACTAGTTGACATAATTCTTATATCTTTCACAGGAAATGATATAAATTGGTTCAAAGTTAGCCGACCGATGCTTCCGCTACCGTAGCTCAGCAGGTAGCGACGCGGCATCTCCAGCATAGGCCCACAAGTTCAATTCCTTGATGGGGCGTATGACAACGAAATTTCGAGAAATAAATGTTTCATGACCTCCTCTTTTGAAGTTTTGAAGATTCTCGAATTTCCGAAATTTTGAAAATTTGGAATCAGAATCTCAGGAGCTCAAAATTAAATTCTGAAAATCTCAAATCCCTGATTCCTTTCAGCACGACATCGTAGAGCTTACTGTAAACCAATGTGGGTCCCTCAACGAACGAAATG</canonical>
            <polymorphic>CATTTTTTATATCTTTTGAATGAACCGAGATAATTGAGCTCAAAGTTTTTTGTCGAAAAGAAAATAACTTCCAATTCAAAAATTCAAAACTTGCAGCTCAAAAAACTGGAATACCCCTACCATGATCGAGAACACCGAACGAACTGTCAATATAATTGTGCAATGTGAAAAGTGAGTTTTACCGCCCGATATCCATGTATCCAGATGTCCTCCCCAGAATCTTCCTTGTCTCTGATGGCTTAACAATCACAACGTTCACCTATGAAGGTCGTAAACTGATCAATTTGAATCCTCCAGGACAGGTGATGGCACTTTTGGATGAGCGGAAAATTGATTTGGCAAATGATACACTGGTGGTTAGGGACAGGGCGGATAATAAGGTTTTGCACTTTTTCGATCCGACTACAGGAAAGGCACAAGGAGATGGGAACTTGAAACATGAGGTGGGACTTTTTAGAGGAAATCAGACCATTGGGAATTTCGTTGTGCCGTTTTTCCCRTAAATTCGTTCAAGGAGATTTTCCGGAGCCTTTTATTGTCACCGTTGCTCATCTAACTTTGAACCAACTTGTCTCATTTCCTGTGAAAGATATCAAAAAGTGGTCAACTGATAAAATGATTATCATAATATCACCAATAGTTTACTAGTTGACATAATTCTTATATCTTTCACAGGAAATGATATAAATTGGTTCAAAGTTAGCCGACCGATGCTTCCGCTACCGTAGCTCAGCAGGTAGCGACGCGGCATCTCCAGCATAGGCCCACAAGTTCAATTCCTTGATGGGGCGTATGACAACGAAATTTCGAGAAATAAATGTTTCATGACCTCCTCTTTTGAAGTTTTGAAGATTCTCGAATTTCCGAAATTTTGAAAATTTGGAATCAGAATCTCAGGAGCTCAAAATTAAATTCTGAAAATCTCAAATCCCTGATTCCTTTCAGCACGACATCGTAGAGCTTACTGTAAACCAATGTGGGTCCCTCAACGAACGAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTTTTTAGAGGAAATCAGACC</pcr_primer_p1>
		<pcr_primer_p2>AAGAGGAGGTCATGAAACATT</pcr_primer_p2>
		<pcr_amplicon_size>390</pcr_amplicon_size>
		<canonical_amplicon>GACTTTTTAGAGGAAATCAGACCATTGGGAATTTCGTTGTGCCGTTTTTCCCGTAAATTCGTTCAAGGAGATTTTCCGGAGCCTTTTATTGTCACCGTTGCTCATCTAACTTTGAACCAACTTGTCTCATTTCCTGTGAAAGATATCAAAAAGTGGTCAACTGATAAAATGATTATCATAATATCACCAATAGTTTACTAGTTGACATAATTCTTATATCTTTCACAGGAAATGATATAAATTGGTTCAAAGTTAGCCGACCGATGCTTCCGCTACCGTAGCTCAGCAGGTAGCGACGCGGCATCTCCAGCATAGGCCCACAAGTTCAATTCCTTGATGGGGCGTATGACAACGAAATTTCGAGAAATAAATGTTTCATGACCTCCTCTT</canonical_amplicon>
		<polymorphic_amplicon>GACTTTTTAGAGGAAATCAGACCATTGGGAATTTCGTTGTGCCGTTTTTCCCRTAAATTCGTTCAAGGAGATTTTCCGGAGCCTTTTATTGTCACCGTTGCTCATCTAACTTTGAACCAACTTGTCTCATTTCCTGTGAAAGATATCAAAAAGTGGTCAACTGATAAAATGATTATCATAATATCACCAATAGTTTACTAGTTGACATAATTCTTATATCTTTCACAGGAAATGATATAAATTGGTTCAAAGTTAGCCGACCGATGCTTCCGCTACCGTAGCTCAGCAGGTAGCGACGCGGCATCTCCAGCATAGGCCCACAAGTTCAATTCCTTGATGGGGCGTATGACAACGAAATTTCGAGAAATAAATGTTTCATGACCTCCTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36189</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>46015</contig_pos>
        <strand>+</strand>
        <context>ACCGTTGCTC[A/G]TCTaactttg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAATTCGTTCAAGGAGATTTTCCGGAGCCTTTTATTGTCACCGTTGCTC</left_flank>
        <right_flank>TCTAACTTTGAACCAACTTGTCTCATTTCCTGTGAAAGATATCAAAAAGT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCGAAAAGAAAATAACTTCCAATTCAAAAATTCAAAACTTGCAGCTCAAAAAACTGGAATACCCCTACCATGATCGAGAACACCGAACGAACTGTCAATATAATTGTGCAATGTGAAAAGTGAGTTTTACCGCCCGATATCCATGTATCCAGATGTCCTCCCCAGAATCTTCCTTGTCTCTGATGGCTTAACAATCACAACGTTCACCTATGAAGGTCGTAAACTGATCAATTTGAATCCTCCAGGACAGGTGATGGCACTTTTGGATGAGCGGAAAATTGATTTGGCAAATGATACACTGGTGGTTAGGGACAGGGCGGATAATAAGGTTTTGCACTTTTTCGATCCGACTACAGGAAAGGCACAAGGAGATGGGAACTTGAAACATGAGGTGGGACTTTTTAGAGGAAATCAGACCATTGGGAATTTCGTTGTGCCGTTTTTCCCGTAAATTCGTTCAAGGAGATTTTCCGGAGCCTTTTATTGTCACCGTTGCTCATCTAACTTTGAACCAACTTGTCTCATTTCCTGTGAAAGATATCAAAAAGTGGTCAACTGATAAAATGATTATCATAATATCACCAATAGTTTACTAGTTGACATAATTCTTATATCTTTCACAGGAAATGATATAAATTGGTTCAAAGTTAGCCGACCGATGCTTCCGCTACCGTAGCTCAGCAGGTAGCGACGCGGCATCTCCAGCATAGGCCCACAAGTTCAATTCCTTGATGGGGCGTATGACAACGAAATTTCGAGAAATAAATGTTTCATGACCTCCTCTTTTGAAGTTTTGAAGATTCTCGAATTTCCGAAATTTTGAAAATTTGGAATCAGAATCTCAGGAGCTCAAAATTAAATTCTGAAAATCTCAAATCCCTGATTCCTTTCAGCACGACATCGTAGAGCTTACTGTAAACCAATGTGGGTCCCTCAACGAACGAAATGTCGCATTTCGTGACCATATTGGTGCTGTGTACGTGGCAATGGTCAAAACTT</canonical>
            <polymorphic>GTCGAAAAGAAAATAACTTCCAATTCAAAAATTCAAAACTTGCAGCTCAAAAAACTGGAATACCCCTACCATGATCGAGAACACCGAACGAACTGTCAATATAATTGTGCAATGTGAAAAGTGAGTTTTACCGCCCGATATCCATGTATCCAGATGTCCTCCCCAGAATCTTCCTTGTCTCTGATGGCTTAACAATCACAACGTTCACCTATGAAGGTCGTAAACTGATCAATTTGAATCCTCCAGGACAGGTGATGGCACTTTTGGATGAGCGGAAAATTGATTTGGCAAATGATACACTGGTGGTTAGGGACAGGGCGGATAATAAGGTTTTGCACTTTTTCGATCCGACTACAGGAAAGGCACAAGGAGATGGGAACTTGAAACATGAGGTGGGACTTTTTAGAGGAAATCAGACCATTGGGAATTTCGTTGTGCCGTTTTTCCCGTAAATTCGTTCAAGGAGATTTTCCGGAGCCTTTTATTGTCACCGTTGCTCRTCTAACTTTGAACCAACTTGTCTCATTTCCTGTGAAAGATATCAAAAAGTGGTCAACTGATAAAATGATTATCATAATATCACCAATAGTTTACTAGTTGACATAATTCTTATATCTTTCACAGGAAATGATATAAATTGGTTCAAAGTTAGCCGACCGATGCTTCCGCTACCGTAGCTCAGCAGGTAGCGACGCGGCATCTCCAGCATAGGCCCACAAGTTCAATTCCTTGATGGGGCGTATGACAACGAAATTTCGAGAAATAAATGTTTCATGACCTCCTCTTTTGAAGTTTTGAAGATTCTCGAATTTCCGAAATTTTGAAAATTTGGAATCAGAATCTCAGGAGCTCAAAATTAAATTCTGAAAATCTCAAATCCCTGATTCCTTTCAGCACGACATCGTAGAGCTTACTGTAAACCAATGTGGGTCCCTCAACGAACGAAATGTCGCATTTCGTGACCATATTGGTGCTGTGTACGTGGCAATGGTCAAAACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCAGACCATTGGGAATTT</pcr_primer_p1>
		<pcr_primer_p2>AAGAGGAGGTCATGAAACATT</pcr_primer_p2>
		<pcr_amplicon_size>376</pcr_amplicon_size>
		<canonical_amplicon>AATCAGACCATTGGGAATTTCGTTGTGCCGTTTTTCCCGTAAATTCGTTCAAGGAGATTTTCCGGAGCCTTTTATTGTCACCGTTGCTCATCTAACTTTGAACCAACTTGTCTCATTTCCTGTGAAAGATATCAAAAAGTGGTCAACTGATAAAATGATTATCATAATATCACCAATAGTTTACTAGTTGACATAATTCTTATATCTTTCACAGGAAATGATATAAATTGGTTCAAAGTTAGCCGACCGATGCTTCCGCTACCGTAGCTCAGCAGGTAGCGACGCGGCATCTCCAGCATAGGCCCACAAGTTCAATTCCTTGATGGGGCGTATGACAACGAAATTTCGAGAAATAAATGTTTCATGACCTCCTCTT</canonical_amplicon>
		<polymorphic_amplicon>AATCAGACCATTGGGAATTTCGTTGTGCCGTTTTTCCCGTAAATTCGTTCAAGGAGATTTTCCGGAGCCTTTTATTGTCACCGTTGCTCRTCTAACTTTGAACCAACTTGTCTCATTTCCTGTGAAAGATATCAAAAAGTGGTCAACTGATAAAATGATTATCATAATATCACCAATAGTTTACTAGTTGACATAATTCTTATATCTTTCACAGGAAATGATATAAATTGGTTCAAAGTTAGCCGACCGATGCTTCCGCTACCGTAGCTCAGCAGGTAGCGACGCGGCATCTCCAGCATAGGCCCACAAGTTCAATTCCTTGATGGGGCGTATGACAACGAAATTTCGAGAAATAAATGTTTCATGACCTCCTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36190</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>54080</contig_pos>
        <strand>+</strand>
        <context>CTTCGAAATG[A/T]GGCGTATAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACGGGATGAGCCCAGCGCCGAATCGATCAGCCTATGGTTGCTTCGAAATG</left_flank>
        <right_flank>GGCGTATAGGTGTAGTCTTCCAGCAGTGTCGTGAGTCAGAAGTCCTTACG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCATGTTTCCGAATTTTCGATTCAGAATGAAAAAGGAGAAGCTATGCTCCCCTTTTTATATTTTTCGTCCTAATCGAATTTCGGTCGTCCATGTGCAATCAAATATTGGAATCTTATGATCATTTTCTGGGAACGGAACGAGAATGGGAAACATCAAAAGATCAGAAAATATGGCTGAAATTTAAGCTTATCAACTTTGAAAAAAAAATGCATAATTATAATTTGAATAATTGCATGAATATTATATTATTGTTGTCTGAAAAAAAATACTTAGAGAGTATTTTTTGCAGGGTGTATACGGTAGGTACCTCGAAGCGGCAAGCCTAAATATTGTCGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGNNNNNNNNNNAGTAACGGCGAGTGAAACGGGATGAGCCCAGCGCCGAATCGATCAGCCTATGGTTGCTTCGAAATGAGGCGTATAGGTGTAGTCTTCCAGCAGTGTCGTGAGTCAGAAGTCCTTACGATTGAGGCCATAGACCAGAGAGGGTGCGAGTCCACAATAGCACATATTCGGTGGAGACGCAGAGAATTTTTTTGTATGTATATCTGTCTGCGTCTCAAGGTTCATTTTATCGTAAAACGATAATACTACGAGCCGATTGTAAATTTTGTTTTCTCATTACTTCGACGATTATCTTCGGGTTTTCAATATTTTCAGCGTTTCAAATCATTTTTCCTTGATTTACATTTTTAAAAAAACTGTAAAATCGTCGAAAAATTGAAAAAATATATATTGAAGATAGGCTCAAAGTACGGTAGTTTTCGCACTGGCGCCTTTTACAGTAATCCTTTCAATTTGCTCATTTTATTGTCCCTAAATCGTTTATAACCCGTATTCTTAAATGTTTGTGCTATTTTTCCCGAAAATCTTATTTTTTATCATTTTTCTTGATTAAAAAACATATAAATAAAA</canonical>
            <polymorphic>CTTCATGTTTCCGAATTTTCGATTCAGAATGAAAAAGGAGAAGCTATGCTCCCCTTTTTATATTTTTCGTCCTAATCGAATTTCGGTCGTCCATGTGCAATCAAATATTGGAATCTTATGATCATTTTCTGGGAACGGAACGAGAATGGGAAACATCAAAAGATCAGAAAATATGGCTGAAATTTAAGCTTATCAACTTTGAAAAAAAAATGCATAATTATAATTTGAATAATTGCATGAATATTATATTATTGTTGTCTGAAAAAAAATACTTAGAGAGTATTTTTTGCAGGGTGTATACGGTAGGTACCTCGAAGCGGCAAGCCTAAATATTGTCGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGNNNNNNNNNNAGTAACGGCGAGTGAAACGGGATGAGCCCAGCGCCGAATCGATCAGCCTATGGTTGCTTCGAAATGWGGCGTATAGGTGTAGTCTTCCAGCAGTGTCGTGAGTCAGAAGTCCTTACGATTGAGGCCATAGACCAGAGAGGGTGCGAGTCCACAATAGCACATATTCGGTGGAGACGCAGAGAATTTTTTTGTATGTATATCTGTCTGCGTCTCAAGGTTCATTTTATCGTAAAACGATAATACTACGAGCCGATTGTAAATTTTGTTTTCTCATTACTTCGACGATTATCTTCGGGTTTTCAATATTTTCAGCGTTTCAAATCATTTTTCCTTGATTTACATTTTTAAAAAAACTGTAAAATCGTCGAAAAATTGAAAAAATATATATTGAAGATAGGCTCAAAGTACGGTAGTTTTCGCACTGGCGCCTTTTACAGTAATCCTTTCAATTTGCTCATTTTATTGTCCCTAAATCGTTTATAACCCGTATTCTTAAATGTTTGTGCTATTTTTCCCGAAAATCTTATTTTTTATCATTTTTCTTGATTAAAAAACATATAAATAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCAGAAAATATGGCTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCTATGGCCTCAATCGTAAG</pcr_primer_p2>
		<pcr_amplicon_size>403</pcr_amplicon_size>
		<canonical_amplicon>GATCAGAAAATATGGCTGAAATTTAAGCTTATCAACTTTGAAAAAAAAATGCATAATTATAATTTGAATAATTGCATGAATATTATATTATTGTTGTCTGAAAAAAAATACTTAGAGAGTATTTTTTGCAGGGTGTATACGGTAGGTACCTCGAAGCGGCAAGCCTAAATATTGTCGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGNNNNNNNNNNAGTAACGGCGAGTGAAACGGGATGAGCCCAGCGCCGAATCGATCAGCCTATGGTTGCTTCGAAATGAGGCGTATAGGTGTAGTCTTCCAGCAGTGTCGTGAGTCAGAAGTCCTTACGATTGAGGCCATAGA</canonical_amplicon>
		<polymorphic_amplicon>GATCAGAAAATATGGCTGAAATTTAAGCTTATCAACTTTGAAAAAAAAATGCATAATTATAATTTGAATAATTGCATGAATATTATATTATTGTTGTCTGAAAAAAAATACTTAGAGAGTATTTTTTGCAGGGTGTATACGGTAGGTACCTCGAAGCGGCAAGCCTAAATATTGTCGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGNNNNNNNNNNAGTAACGGCGAGTGAAACGGGATGAGCCCAGCGCCGAATCGATCAGCCTATGGTTGCTTCGAAATGWGGCGTATAGGTGTAGTCTTCCAGCAGTGTCGTGAGTCAGAAGTCCTTACGATTGAGGCCATAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36191</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>54118</contig_pos>
        <strand>+</strand>
        <context>GTCGTGAGTC[A/C]GAAGTCCTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCTTCGAAATGAGGCGTATAGGTGTAGTCTTCCAGCAGTGTCGTGAGTC</left_flank>
        <right_flank>GAAGTCCTTACGATTGAGGCCATAGACCAGAGAGGGTGCGAGTCCACAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAGCTATGCTCCCCTTTTTATATTTTTCGTCCTAATCGAATTTCGGTCGTCCATGTGCAATCAAATATTGGAATCTTATGATCATTTTCTGGGAACGGAACGAGAATGGGAAACATCAAAAGATCAGAAAATATGGCTGAAATTTAAGCTTATCAACTTTGAAAAAAAAATGCATAATTATAATTTGAATAATTGCATGAATATTATATTATTGTTGTCTGAAAAAAAATACTTAGAGAGTATTTTTTGCAGGGTGTATACGGTAGGTACCTCGAAGCGGCAAGCCTAAATATTGTCGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGNNNNNNNNNNAGTAACGGCGAGTGAAACGGGATGAGCCCAGCGCCGAATCGATCAGCCTATGGTTGCTTCGAAATGAGGCGTATAGGTGTAGTCTTCCAGCAGTGTCGTGAGTCAGAAGTCCTTACGATTGAGGCCATAGACCAGAGAGGGTGCGAGTCCACAATAGCACATATTCGGTGGAGACGCAGAGAATTTTTTTGTATGTATATCTGTCTGCGTCTCAAGGTTCATTTTATCGTAAAACGATAATACTACGAGCCGATTGTAAATTTTGTTTTCTCATTACTTCGACGATTATCTTCGGGTTTTCAATATTTTCAGCGTTTCAAATCATTTTTCCTTGATTTACATTTTTAAAAAAACTGTAAAATCGTCGAAAAATTGAAAAAATATATATTGAAGATAGGCTCAAAGTACGGTAGTTTTCGCACTGGCGCCTTTTACAGTAATCCTTTCAATTTGCTCATTTTATTGTCCCTAAATCGTTTATAACCCGTATTCTTAAATGTTTGTGCTATTTTTCCCGAAAATCTTATTTTTTATCATTTTTCTTGATTAAAAAACATATAAATAAAACTCTATTCATTCCGAGTAATAAAAAAAATCTCAAAAGG</canonical>
            <polymorphic>AGAAGCTATGCTCCCCTTTTTATATTTTTCGTCCTAATCGAATTTCGGTCGTCCATGTGCAATCAAATATTGGAATCTTATGATCATTTTCTGGGAACGGAACGAGAATGGGAAACATCAAAAGATCAGAAAATATGGCTGAAATTTAAGCTTATCAACTTTGAAAAAAAAATGCATAATTATAATTTGAATAATTGCATGAATATTATATTATTGTTGTCTGAAAAAAAATACTTAGAGAGTATTTTTTGCAGGGTGTATACGGTAGGTACCTCGAAGCGGCAAGCCTAAATATTGTCGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGNNNNNNNNNNAGTAACGGCGAGTGAAACGGGATGAGCCCAGCGCCGAATCGATCAGCCTATGGTTGCTTCGAAATGAGGCGTATAGGTGTAGTCTTCCAGCAGTGTCGTGAGTCMGAAGTCCTTACGATTGAGGCCATAGACCAGAGAGGGTGCGAGTCCACAATAGCACATATTCGGTGGAGACGCAGAGAATTTTTTTGTATGTATATCTGTCTGCGTCTCAAGGTTCATTTTATCGTAAAACGATAATACTACGAGCCGATTGTAAATTTTGTTTTCTCATTACTTCGACGATTATCTTCGGGTTTTCAATATTTTCAGCGTTTCAAATCATTTTTCCTTGATTTACATTTTTAAAAAAACTGTAAAATCGTCGAAAAATTGAAAAAATATATATTGAAGATAGGCTCAAAGTACGGTAGTTTTCGCACTGGCGCCTTTTACAGTAATCCTTTCAATTTGCTCATTTTATTGTCCCTAAATCGTTTATAACCCGTATTCTTAAATGTTTGTGCTATTTTTCCCGAAAATCTTATTTTTTATCATTTTTCTTGATTAAAAAACATATAAATAAAACTCTATTCATTCCGAGTAATAAAAAAAATCTCAAAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCAGAAAATATGGCTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>AATTTACAATCGGCTCGTAGT</pcr_primer_p2>
		<pcr_amplicon_size>534</pcr_amplicon_size>
		<canonical_amplicon>GATCAGAAAATATGGCTGAAATTTAAGCTTATCAACTTTGAAAAAAAAATGCATAATTATAATTTGAATAATTGCATGAATATTATATTATTGTTGTCTGAAAAAAAATACTTAGAGAGTATTTTTTGCAGGGTGTATACGGTAGGTACCTCGAAGCGGCAAGCCTAAATATTGTCGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGNNNNNNNNNNAGTAACGGCGAGTGAAACGGGATGAGCCCAGCGCCGAATCGATCAGCCTATGGTTGCTTCGAAATGAGGCGTATAGGTGTAGTCTTCCAGCAGTGTCGTGAGTCAGAAGTCCTTACGATTGAGGCCATAGACCAGAGAGGGTGCGAGTCCACAATAGCACATATTCGGTGGAGACGCAGAGAATTTTTTTGTATGTATATCTGTCTGCGTCTCAAGGTTCATTTTATCGTAAAACGATAATACTACGAGCCGATTGTAAATT</canonical_amplicon>
		<polymorphic_amplicon>GATCAGAAAATATGGCTGAAATTTAAGCTTATCAACTTTGAAAAAAAAATGCATAATTATAATTTGAATAATTGCATGAATATTATATTATTGTTGTCTGAAAAAAAATACTTAGAGAGTATTTTTTGCAGGGTGTATACGGTAGGTACCTCGAAGCGGCAAGCCTAAATATTGTCGGAATAAAAAAAGTGAGACTCGGTGTTTGCGTACTTTGATTCCCGCCTCCCCCCACCGACGCTCCGCCCATCGCTTTGCAAGTGCGNNNNNNNNNNAGTAACGGCGAGTGAAACGGGATGAGCCCAGCGCCGAATCGATCAGCCTATGGTTGCTTCGAAATGAGGCGTATAGGTGTAGTCTTCCAGCAGTGTCGTGAGTCMGAAGTCCTTACGATTGAGGCCATAGACCAGAGAGGGTGCGAGTCCACAATAGCACATATTCGGTGGAGACGCAGAGAATTTTTTTGTATGTATATCTGTCTGCGTCTCAAGGTTCATTTTATCGTAAAACGATAATACTACGAGCCGATTGTAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36192</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>66914</contig_pos>
        <strand></strand>
        <context>TTCAATTCAC[C/A]TATTTTACCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GAAATTCTAGTTTTTTTGCCCTTTTTATTCTTTATTGAGGTTCAATTCAC</left_flank>
        <right_flank>TATTTTACCTAAAAATCGCTGAAAATTGGCTGGAAACCCACTTTTTAAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACGGCTTCTGAAGACATTTTAGAAGCAAATTGAGGGGATCGTTGAATGAGATTCAGAAGCAGACGAATCGATCGACGTGCTTTTTTCAGGGATTCAGATGACGTGGCGGATTCAGAAACCGTCAACGTGGATTGCAGATAATTGGCGAATGTTATGGCGAGAAGAGTTTGATGAATTTCAGCGAAGTTCTGGAACATTTTCAGATTTCGATATTTTGAGTTTTCGAATTTTCAAACTTCTGAAAATCGATCAATAATTTCTTCGCTCGCTTCTTCGGTTCCCACGATTTTCATCGCTTCGAACAGCTCGTCTGATAAGATTTTGGCTGAAATTTTCAGATTTTTTCAGCTAAAAAACCAATTTTCACCTCCATAATCAATTTCTCCGTTGAATTTCTCCCGTTTTCCCAATTTGACAATTTCGCTGAGTAATTTTTCCATTTTTATCTGAAATTCTAGTTTTTTTGCCCTTTTTATTCTTTATTGAGGTTCAATTCACCTATTTTACCTAAAAATCGCTGAAAATTGGCTGGAAACCCACTTTTTAAAATTGAAATTTCAAATTCGCGCCCTTCAACTCTGGTTTTCAATGGAGCGCGCTTGCATTTTACACTAATTTTGGCCGAGACCCCGCAAATTCCGGAGAAAAAAATTTGCGGGGAAAAAAAACTCCGGAGAAAAGTGGGCGGAGTCAGGGGCGGAGATTTTTTTCCGGAATTTGCGGGGTCTCATTTTGGCCATTTTTCGCCAATTTTCAGCTGAAAAAACGCCAAAAAACAAGGAAAATTCTCGAAATTTCAAGAGAATCGTTAATTTAGTGGTTTTTAAGATGATTTTTTGAAAGCTTTCCAAGAGTTTTAGAGAAAAATCGGCTGAAAACTCGTTTTTTTTGCAGGATTACGGTGCGTAGAAGTCCGCAAACACCGATGCAAAATATTGCGGACTAAAATGAAAAATTAAATAAATTTTTAGGTAAAAATTCTGGGGATAAAACCAAGGG</canonical>
            <polymorphic>CACGGCTTCTGAAGACATTTTAGAAGCAAATTGAGGGGATCGTTGAATGAGATTCAGAAGCAGACGAATCGATCGACGTGCTTTTTTCAGGGATTCAGATGACGTGGCGGATTCAGAAACCGTCAACGTGGATTGCAGATAATTGGCGAATGTTATGGCGAGAAGAGTTTGATGAATTTCAGCGAAGTTCTGGAACATTTTCAGATTTCGATATTTTGAGTTTTCGAATTTTCAAACTTCTGAAAATCGATCAATAATTTCTTCGCTCGCTTCTTCGGTTCCCACGATTTTCATCGCTTCGAACAGCTCGTCTGATAAGATTTTGGCTGAAATTTTCAGATTTTTTCAGCTAAAAAACCAATTTTCACCTCCATAATCAATTTCTCCGTTGAATTTCTCCCGTTTTCCCAATTTGACAATTTCGCTGAGTAATTTTTCCATTTTTATCTGAAATTCTAGTTTTTTTGCCCTTTTTATTCTTTATTGAGGTTCAATTCACMTATTTTACCTAAAAATCGCTGAAAATTGGCTGGAAACCCACTTTTTAAAATTGAAATTTCAAATTCGCGCCCTTCAACTCTGGTTTTCAATGGAGCGCGCTTGCATTTTACACTAATTTTGGCCGAGACCCCGCAAATTCCGGAGAAAAAAATTTGCGGGGAAAAAAAACTCCGGAGAAAAGTGGGCGGAGTCAGGGGCGGAGATTTTTTTCCGGAATTTGCGGGGTCTCATTTTGGCCATTTTTCGCCAATTTTCAGCTGAAAAAACGCCAAAAAACAAGGAAAATTCTCGAAATTTCAAGAGAATCGTTAATTTAGTGGTTTTTAAGATGATTTTTTGAAAGCTTTCCAAGAGTTTTAGAGAAAAATCGGCTGAAAACTCGTTTTTTTTGCAGGATTACGGTGCGTAGAAGTCCGCAAACACCGATGCAAAATATTGCGGACTAAAATGAAAAATTAAATAAATTTTTAGGTAAAAATTCTGGGGATAAAACCAAGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCAATTTTCACCTCCATAAT</pcr_primer_p1>
		<pcr_primer_p2>CATTGAAAACCAGAGTTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>ACCAATTTTCACCTCCATAATCAATTTCTCCGTTGAATTTCTCCCGTTTTCCCAATTTGACAATTTCGCTGAGTAATTTTTCCATTTTTATCTGAAATTCTAGTTTTTTTGCCCTTTTTATTCTTTATTGAGGTTCAATTCACCTATTTTACCTAAAAATCGCTGAAAATTGGCTGGAAACCCACTTTTTAAAATTGAAATTTCAAATTCGCGCCCTTCAACTCTGGTTTTCAATG</canonical_amplicon>
		<polymorphic_amplicon>ACCAATTTTCACCTCCATAATCAATTTCTCCGTTGAATTTCTCCCGTTTTCCCAATTTGACAATTTCGCTGAGTAATTTTTCCATTTTTATCTGAAATTCTAGTTTTTTTGCCCTTTTTATTCTTTATTGAGGTTCAATTCACMTATTTTACCTAAAAATCGCTGAAAATTGGCTGGAAACCCACTTTTTAAAATTGAAATTTCAAATTCGCGCCCTTCAACTCTGGTTTTCAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36193</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>67024</contig_pos>
        <strand></strand>
        <context>CTTGCATTTT[A/C]MACTAATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAAATTCGCGCCCTTCAACTCTGGTTTTCAATGGAGCGCGCTTGCATTTT</left_flank>
        <right_flank>CACTAATTTTGGCCGAGACCCCGCAAATTCCGGAGAAAAAAATTTGCGGG</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCAGAAACCGTCAACGTGGATTGCAGATAATTGGCGAATGTTATGGCGAGAAGAGTTTGATGAATTTCAGCGAAGTTCTGGAACATTTTCAGATTTCGATATTTTGAGTTTTCGAATTTTCAAACTTCTGAAAATCGATCAATAATTTCTTCGCTCGCTTCTTCGGTTCCCACGATTTTCATCGCTTCGAACAGCTCGTCTGATAAGATTTTGGCTGAAATTTTCAGATTTTTTCAGCTAAAAAACCAATTTTCACCTCCATAATCAATTTCTCCGTTGAATTTCTCCCGTTTTCCCAATTTGACAATTTCGCTGAGTAATTTTTCCATTTTTATCTGAAATTCTAGTTTTTTTGCCCTTTTTATTCTTTATTGAGGTTCAATTCACCTATTTTACCTAAAAATCGCTGAAAATTGGCTGGAAACCCACTTTTTAAAATTGAAATTTCAAATTCGCGCCCTTCAACTCTGGTTTTCAATGGAGCGCGCTTGCATTTTACACTAATTTTGGCCGAGACCCCGCAAATTCCGGAGAAAAAAATTTGCGGGGAAAAAAAACTCCGGAGAAAAGTGGGCGGAGTCAGGGGCGGAGATTTTTTTCCGGAATTTGCGGGGTCTCATTTTGGCCATTTTTCGCCAATTTTCAGCTGAAAAAACGCCAAAAAACAAGGAAAATTCTCGAAATTTCAAGAGAATCGTTAATTTAGTGGTTTTTAAGATGATTTTTTGAAAGCTTTCCAAGAGTTTTAGAGAAAAATCGGCTGAAAACTCGTTTTTTTTGCAGGATTACGGTGCGTAGAAGTCCGCAAACACCGATGCAAAATATTGCGGACTAAAATGAAAAATTAAATAAATTTTTAGGTAAAAATTCTGGGGATAAAACCAAGGGAAACTGATAAAAATAATGAAAAAAGCTGCTTTCACAATTTTTAGGTGAAAATATTCATTTTTTTTTAGTAAAAAAAGAGCTAAAGCTATGGGAAATTTTCAGAGAAAAAG</canonical>
            <polymorphic>ATTCAGAAACCGTCAACGTGGATTGCAGATAATTGGCGAATGTTATGGCGAGAAGAGTTTGATGAATTTCAGCGAAGTTCTGGAACATTTTCAGATTTCGATATTTTGAGTTTTCGAATTTTCAAACTTCTGAAAATCGATCAATAATTTCTTCGCTCGCTTCTTCGGTTCCCACGATTTTCATCGCTTCGAACAGCTCGTCTGATAAGATTTTGGCTGAAATTTTCAGATTTTTTCAGCTAAAAAACCAATTTTCACCTCCATAATCAATTTCTCCGTTGAATTTCTCCCGTTTTCCCAATTTGACAATTTCGCTGAGTAATTTTTCCATTTTTATCTGAAATTCTAGTTTTTTTGCCCTTTTTATTCTTTATTGAGGTTCAATTCACCTATTTTACCTAAAAATCGCTGAAAATTGGCTGGAAACCCACTTTTTAAAATTGAAATTTCAAATTCGCGCCCTTCAACTCTGGTTTTCAATGGAGCGCGCTTGCATTTTMCACTAATTTTGGCCGAGACCCCGCAAATTCCGGAGAAAAAAATTTGCGGGGAAAAAAAACTCCGGAGAAAAGTGGGCGGAGTCAGGGGCGGAGATTTTTTTCCGGAATTTGCGGGGTCTCATTTTGGCCATTTTTCGCCAATTTTCAGCTGAAAAAACGCCAAAAAACAAGGAAAATTCTCGAAATTTCAAGAGAATCGTTAATTTAGTGGTTTTTAAGATGATTTTTTGAAAGCTTTCCAAGAGTTTTAGAGAAAAATCGGCTGAAAACTCGTTTTTTTTGCAGGATTACGGTGCGTAGAAGTCCGCAAACACCGATGCAAAATATTGCGGACTAAAATGAAAAATTAAATAAATTTTTAGGTAAAAATTCTGGGGATAAAACCAAGGGAAACTGATAAAAATAATGAAAAAAGCTGCTTTCACAATTTTTAGGTGAAAATATTCATTTTTTTTTAGTAAAAAAAGAGCTAAAGCTATGGGAAATTTTCAGAGAAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTTACCTAAAAATCGCTGAA</pcr_primer_p1>
		<pcr_primer_p2>TTCGAGAATTTTCCTTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>294</pcr_amplicon_size>
		<canonical_amplicon>TATTTTACCTAAAAATCGCTGAAAATTGGCTGGAAACCCACTTTTTAAAATTGAAATTTCAAATTCGCGCCCTTCAACTCTGGTTTTCAATGGAGCGCGCTTGCATTTTACACTAATTTTGGCCGAGACCCCGCAAATTCCGGAGAAAAAAATTTGCGGGGAAAAAAAACTCCGGAGAAAAGTGGGCGGAGTCAGGGGCGGAGATTTTTTTCCGGAATTTGCGGGGTCTCATTTTGGCCATTTTTCGCCAATTTTCAGCTGAAAAAACGCCAAAAAACAAGGAAAATTCTCGAA</canonical_amplicon>
		<polymorphic_amplicon>TATTTTACCTAAAAATCGCTGAAAATTGGCTGGAAACCCACTTTTTAAAATTGAAATTTCAAATTCGCGCCCTTCAACTCTGGTTTTCAATGGAGCGCGCTTGCATTTTMCACTAATTTTGGCCGAGACCCCGCAAATTCCGGAGAAAAAAATTTGCGGGGAAAAAAAACTCCGGAGAAAAGTGGGCGGAGTCAGGGGCGGAGATTTTTTTCCGGAATTTGCGGGGTCTCATTTTGGCCATTTTTCGCCAATTTTCAGCTGAAAAAACGCCAAAAAACAAGGAAAATTCTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36194</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>67025</contig_pos>
        <strand></strand>
        <context>TTGCATTTTM[C/A]ACTAATTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AAATTCGCGCCCTTCAACTCTGGTTTTCAATGGAGCGCGCTTGCATTTTA</left_flank>
        <right_flank>ACTAATTTTGGCCGAGACCCCGCAAATTCCGGAGAAAAAAATTTGCGGGG</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAGAAACCGTCAACGTGGATTGCAGATAATTGGCGAATGTTATGGCGAGAAGAGTTTGATGAATTTCAGCGAAGTTCTGGAACATTTTCAGATTTCGATATTTTGAGTTTTCGAATTTTCAAACTTCTGAAAATCGATCAATAATTTCTTCGCTCGCTTCTTCGGTTCCCACGATTTTCATCGCTTCGAACAGCTCGTCTGATAAGATTTTGGCTGAAATTTTCAGATTTTTTCAGCTAAAAAACCAATTTTCACCTCCATAATCAATTTCTCCGTTGAATTTCTCCCGTTTTCCCAATTTGACAATTTCGCTGAGTAATTTTTCCATTTTTATCTGAAATTCTAGTTTTTTTGCCCTTTTTATTCTTTATTGAGGTTCAATTCACCTATTTTACCTAAAAATCGCTGAAAATTGGCTGGAAACCCACTTTTTAAAATTGAAATTTCAAATTCGCGCCCTTCAACTCTGGTTTTCAATGGAGCGCGCTTGCATTTTACACTAATTTTGGCCGAGACCCCGCAAATTCCGGAGAAAAAAATTTGCGGGGAAAAAAAACTCCGGAGAAAAGTGGGCGGAGTCAGGGGCGGAGATTTTTTTCCGGAATTTGCGGGGTCTCATTTTGGCCATTTTTCGCCAATTTTCAGCTGAAAAAACGCCAAAAAACAAGGAAAATTCTCGAAATTTCAAGAGAATCGTTAATTTAGTGGTTTTTAAGATGATTTTTTGAAAGCTTTCCAAGAGTTTTAGAGAAAAATCGGCTGAAAACTCGTTTTTTTTGCAGGATTACGGTGCGTAGAAGTCCGCAAACACCGATGCAAAATATTGCGGACTAAAATGAAAAATTAAATAAATTTTTAGGTAAAAATTCTGGGGATAAAACCAAGGGAAACTGATAAAAATAATGAAAAAAGCTGCTTTCACAATTTTTAGGTGAAAATATTCATTTTTTTTTAGTAAAAAAAGAGCTAAAGCTATGGGAAATTTTCAGAGAAAAAGC</canonical>
            <polymorphic>TTCAGAAACCGTCAACGTGGATTGCAGATAATTGGCGAATGTTATGGCGAGAAGAGTTTGATGAATTTCAGCGAAGTTCTGGAACATTTTCAGATTTCGATATTTTGAGTTTTCGAATTTTCAAACTTCTGAAAATCGATCAATAATTTCTTCGCTCGCTTCTTCGGTTCCCACGATTTTCATCGCTTCGAACAGCTCGTCTGATAAGATTTTGGCTGAAATTTTCAGATTTTTTCAGCTAAAAAACCAATTTTCACCTCCATAATCAATTTCTCCGTTGAATTTCTCCCGTTTTCCCAATTTGACAATTTCGCTGAGTAATTTTTCCATTTTTATCTGAAATTCTAGTTTTTTTGCCCTTTTTATTCTTTATTGAGGTTCAATTCACCTATTTTACCTAAAAATCGCTGAAAATTGGCTGGAAACCCACTTTTTAAAATTGAAATTTCAAATTCGCGCCCTTCAACTCTGGTTTTCAATGGAGCGCGCTTGCATTTTAMACTAATTTTGGCCGAGACCCCGCAAATTCCGGAGAAAAAAATTTGCGGGGAAAAAAAACTCCGGAGAAAAGTGGGCGGAGTCAGGGGCGGAGATTTTTTTCCGGAATTTGCGGGGTCTCATTTTGGCCATTTTTCGCCAATTTTCAGCTGAAAAAACGCCAAAAAACAAGGAAAATTCTCGAAATTTCAAGAGAATCGTTAATTTAGTGGTTTTTAAGATGATTTTTTGAAAGCTTTCCAAGAGTTTTAGAGAAAAATCGGCTGAAAACTCGTTTTTTTTGCAGGATTACGGTGCGTAGAAGTCCGCAAACACCGATGCAAAATATTGCGGACTAAAATGAAAAATTAAATAAATTTTTAGGTAAAAATTCTGGGGATAAAACCAAGGGAAACTGATAAAAATAATGAAAAAAGCTGCTTTCACAATTTTTAGGTGAAAATATTCATTTTTTTTTAGTAAAAAAAGAGCTAAAGCTATGGGAAATTTTCAGAGAAAAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>154 136 131 111 85 83 72 72 64 42 19 18 13</canonical_bands>
                <polymorphic_bands>154 144 136 131 111 85 83 64 42 19 18 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTTTACCTAAAAATCGCTGAA</pcr_primer_p1>
		<pcr_primer_p2>TTCGAGAATTTTCCTTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>294</pcr_amplicon_size>
		<canonical_amplicon>TATTTTACCTAAAAATCGCTGAAAATTGGCTGGAAACCCACTTTTTAAAATTGAAATTTCAAATTCGCGCCCTTCAACTCTGGTTTTCAATGGAGCGCGCTTGCATTTTACACTAATTTTGGCCGAGACCCCGCAAATTCCGGAGAAAAAAATTTGCGGGGAAAAAAAACTCCGGAGAAAAGTGGGCGGAGTCAGGGGCGGAGATTTTTTTCCGGAATTTGCGGGGTCTCATTTTGGCCATTTTTCGCCAATTTTCAGCTGAAAAAACGCCAAAAAACAAGGAAAATTCTCGAA</canonical_amplicon>
		<polymorphic_amplicon>TATTTTACCTAAAAATCGCTGAAAATTGGCTGGAAACCCACTTTTTAAAATTGAAATTTCAAATTCGCGCCCTTCAACTCTGGTTTTCAATGGAGCGCGCTTGCATTTTAMACTAATTTTGGCCGAGACCCCGCAAATTCCGGAGAAAAAAATTTGCGGGGAAAAAAAACTCCGGAGAAAAGTGGGCGGAGTCAGGGGCGGAGATTTTTTTCCGGAATTTGCGGGGTCTCATTTTGGCCATTTTTCGCCAATTTTCAGCTGAAAAAACGCCAAAAAACAAGGAAAATTCTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36195</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>67155</contig_pos>
        <strand></strand>
        <context>ATTTTGGCCA[T/A]TTTTCGCCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GTCAGGGGCGGAGATTTTTTTCCGGAATTTGCGGGGTCTCATTTTGGCCA</left_flank>
        <right_flank>TTTTCGCCAATTTTCAGCTGAAAAAACGCCAAAAAACAAGGAAAATTCTC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAATCGATCAATAATTTCTTCGCTCGCTTCTTCGGTTCCCACGATTTTCATCGCTTCGAACAGCTCGTCTGATAAGATTTTGGCTGAAATTTTCAGATTTTTTCAGCTAAAAAACCAATTTTCACCTCCATAATCAATTTCTCCGTTGAATTTCTCCCGTTTTCCCAATTTGACAATTTCGCTGAGTAATTTTTCCATTTTTATCTGAAATTCTAGTTTTTTTGCCCTTTTTATTCTTTATTGAGGTTCAATTCACCTATTTTACCTAAAAATCGCTGAAAATTGGCTGGAAACCCACTTTTTAAAATTGAAATTTCAAATTCGCGCCCTTCAACTCTGGTTTTCAATGGAGCGCGCTTGCATTTTACACTAATTTTGGCCGAGACCCCGCAAATTCCGGAGAAAAAAATTTGCGGGGAAAAAAAACTCCGGAGAAAAGTGGGCGGAGTCAGGGGCGGAGATTTTTTTCCGGAATTTGCGGGGTCTCATTTTGGCCATTTTTCGCCAATTTTCAGCTGAAAAAACGCCAAAAAACAAGGAAAATTCTCGAAATTTCAAGAGAATCGTTAATTTAGTGGTTTTTAAGATGATTTTTTGAAAGCTTTCCAAGAGTTTTAGAGAAAAATCGGCTGAAAACTCGTTTTTTTTGCAGGATTACGGTGCGTAGAAGTCCGCAAACACCGATGCAAAATATTGCGGACTAAAATGAAAAATTAAATAAATTTTTAGGTAAAAATTCTGGGGATAAAACCAAGGGAAACTGATAAAAATAATGAAAAAAGCTGCTTTCACAATTTTTAGGTGAAAATATTCATTTTTTTTTAGTAAAAAAAGAGCTAAAGCTATGGGAAATTTTCAGAGAAAAAGCGAGAGATCATTGGGAAGAAAAAGCAAAAATTCACAGAAAATTCTGGGGTGACTAGAACATGAGAAAATGCACAAATATGTGAAAAAACTGTCAAAAAACGGCGGTAAAAATTCAAAACATCAACTAATTC</canonical>
            <polymorphic>GAAAATCGATCAATAATTTCTTCGCTCGCTTCTTCGGTTCCCACGATTTTCATCGCTTCGAACAGCTCGTCTGATAAGATTTTGGCTGAAATTTTCAGATTTTTTCAGCTAAAAAACCAATTTTCACCTCCATAATCAATTTCTCCGTTGAATTTCTCCCGTTTTCCCAATTTGACAATTTCGCTGAGTAATTTTTCCATTTTTATCTGAAATTCTAGTTTTTTTGCCCTTTTTATTCTTTATTGAGGTTCAATTCACCTATTTTACCTAAAAATCGCTGAAAATTGGCTGGAAACCCACTTTTTAAAATTGAAATTTCAAATTCGCGCCCTTCAACTCTGGTTTTCAATGGAGCGCGCTTGCATTTTACACTAATTTTGGCCGAGACCCCGCAAATTCCGGAGAAAAAAATTTGCGGGGAAAAAAAACTCCGGAGAAAAGTGGGCGGAGTCAGGGGCGGAGATTTTTTTCCGGAATTTGCGGGGTCTCATTTTGGCCAWTTTTCGCCAATTTTCAGCTGAAAAAACGCCAAAAAACAAGGAAAATTCTCGAAATTTCAAGAGAATCGTTAATTTAGTGGTTTTTAAGATGATTTTTTGAAAGCTTTCCAAGAGTTTTAGAGAAAAATCGGCTGAAAACTCGTTTTTTTTGCAGGATTACGGTGCGTAGAAGTCCGCAAACACCGATGCAAAATATTGCGGACTAAAATGAAAAATTAAATAAATTTTTAGGTAAAAATTCTGGGGATAAAACCAAGGGAAACTGATAAAAATAATGAAAAAAGCTGCTTTCACAATTTTTAGGTGAAAATATTCATTTTTTTTTAGTAAAAAAAGAGCTAAAGCTATGGGAAATTTTCAGAGAAAAAGCGAGAGATCATTGGGAAGAAAAAGCAAAAATTCACAGAAAATTCTGGGGTGACTAGAACATGAGAAAATGCACAAATATGTGAAAAAACTGTCAAAAAACGGCGGTAAAAATTCAAAACATCAACTAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCAACTCTGGTTTTCAATG</pcr_primer_p1>
		<pcr_primer_p2>AAACCACTAAATTAACGATTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CTTCAACTCTGGTTTTCAATGGAGCGCGCTTGCATTTTACACTAATTTTGGCCGAGACCCCGCAAATTCCGGAGAAAAAAATTTGCGGGGAAAAAAAACTCCGGAGAAAAGTGGGCGGAGTCAGGGGCGGAGATTTTTTTCCGGAATTTGCGGGGTCTCATTTTGGCCATTTTTCGCCAATTTTCAGCTGAAAAAACGCCAAAAAACAAGGAAAATTCTCGAAATTTCAAGAGAATCGTTAATTTAGTGGTTT</canonical_amplicon>
		<polymorphic_amplicon>CTTCAACTCTGGTTTTCAATGGAGCGCGCTTGCATTTTACACTAATTTTGGCCGAGACCCCGCAAATTCCGGAGAAAAAAATTTGCGGGGAAAAAAAACTCCGGAGAAAAGTGGGCGGAGTCAGGGGCGGAGATTTTTTTCCGGAATTTGCGGGGTCTCATTTTGGCCAWTTTTCGCCAATTTTCAGCTGAAAAAACGCCAAAAAACAAGGAAAATTCTCGAAATTTCAAGAGAATCGTTAATTTAGTGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36196</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>67214</contig_pos>
        <strand></strand>
        <context>TCGAAATTTC[A/G]AGAGAATCGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTTCAGCTGAAAAAACGCCAAAAAACAAGGAAAATTCTCGAAATTTC</left_flank>
        <right_flank>AGAGAATCGTTAATTTAGTGGTTTTTAAGATGATTTTTTGAAAGCTTTCC</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACAGCTCGTCTGATAAGATTTTGGCTGAAATTTTCAGATTTTTTCAGCTAAAAAACCAATTTTCACCTCCATAATCAATTTCTCCGTTGAATTTCTCCCGTTTTCCCAATTTGACAATTTCGCTGAGTAATTTTTCCATTTTTATCTGAAATTCTAGTTTTTTTGCCCTTTTTATTCTTTATTGAGGTTCAATTCACCTATTTTACCTAAAAATCGCTGAAAATTGGCTGGAAACCCACTTTTTAAAATTGAAATTTCAAATTCGCGCCCTTCAACTCTGGTTTTCAATGGAGCGCGCTTGCATTTTACACTAATTTTGGCCGAGACCCCGCAAATTCCGGAGAAAAAAATTTGCGGGGAAAAAAAACTCCGGAGAAAAGTGGGCGGAGTCAGGGGCGGAGATTTTTTTCCGGAATTTGCGGGGTCTCATTTTGGCCATTTTTCGCCAATTTTCAGCTGAAAAAACGCCAAAAAACAAGGAAAATTCTCGAAATTTCAAGAGAATCGTTAATTTAGTGGTTTTTAAGATGATTTTTTGAAAGCTTTCCAAGAGTTTTAGAGAAAAATCGGCTGAAAACTCGTTTTTTTTGCAGGATTACGGTGCGTAGAAGTCCGCAAACACCGATGCAAAATATTGCGGACTAAAATGAAAAATTAAATAAATTTTTAGGTAAAAATTCTGGGGATAAAACCAAGGGAAACTGATAAAAATAATGAAAAAAGCTGCTTTCACAATTTTTAGGTGAAAATATTCATTTTTTTTTAGTAAAAAAAGAGCTAAAGCTATGGGAAATTTTCAGAGAAAAAGCGAGAGATCATTGGGAAGAAAAAGCAAAAATTCACAGAAAATTCTGGGGTGACTAGAACATGAGAAAATGCACAAATATGTGAAAAAACTGTCAAAAAACGGCGGTAAAAATTCAAAACATCAACTAATTCTGTCTTCCAGGAAACAGTGAATTCTCAAAAATCCAATCGGCCGATGTGTCTGCCATCAT</canonical>
            <polymorphic>GAACAGCTCGTCTGATAAGATTTTGGCTGAAATTTTCAGATTTTTTCAGCTAAAAAACCAATTTTCACCTCCATAATCAATTTCTCCGTTGAATTTCTCCCGTTTTCCCAATTTGACAATTTCGCTGAGTAATTTTTCCATTTTTATCTGAAATTCTAGTTTTTTTGCCCTTTTTATTCTTTATTGAGGTTCAATTCACCTATTTTACCTAAAAATCGCTGAAAATTGGCTGGAAACCCACTTTTTAAAATTGAAATTTCAAATTCGCGCCCTTCAACTCTGGTTTTCAATGGAGCGCGCTTGCATTTTACACTAATTTTGGCCGAGACCCCGCAAATTCCGGAGAAAAAAATTTGCGGGGAAAAAAAACTCCGGAGAAAAGTGGGCGGAGTCAGGGGCGGAGATTTTTTTCCGGAATTTGCGGGGTCTCATTTTGGCCATTTTTCGCCAATTTTCAGCTGAAAAAACGCCAAAAAACAAGGAAAATTCTCGAAATTTCRAGAGAATCGTTAATTTAGTGGTTTTTAAGATGATTTTTTGAAAGCTTTCCAAGAGTTTTAGAGAAAAATCGGCTGAAAACTCGTTTTTTTTGCAGGATTACGGTGCGTAGAAGTCCGCAAACACCGATGCAAAATATTGCGGACTAAAATGAAAAATTAAATAAATTTTTAGGTAAAAATTCTGGGGATAAAACCAAGGGAAACTGATAAAAATAATGAAAAAAGCTGCTTTCACAATTTTTAGGTGAAAATATTCATTTTTTTTTAGTAAAAAAAGAGCTAAAGCTATGGGAAATTTTCAGAGAAAAAGCGAGAGATCATTGGGAAGAAAAAGCAAAAATTCACAGAAAATTCTGGGGTGACTAGAACATGAGAAAATGCACAAATATGTGAAAAAACTGTCAAAAAACGGCGGTAAAAATTCAAAACATCAACTAATTCTGTCTTCCAGGAAACAGTGAATTCTCAAAAATCCAATCGGCCGATGTGTCTGCCATCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCAACTCTGGTTTTCAATG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTCTAAAACTCTTGGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>297</pcr_amplicon_size>
		<canonical_amplicon>CTTCAACTCTGGTTTTCAATGGAGCGCGCTTGCATTTTACACTAATTTTGGCCGAGACCCCGCAAATTCCGGAGAAAAAAATTTGCGGGGAAAAAAAACTCCGGAGAAAAGTGGGCGGAGTCAGGGGCGGAGATTTTTTTCCGGAATTTGCGGGGTCTCATTTTGGCCATTTTTCGCCAATTTTCAGCTGAAAAAACGCCAAAAAACAAGGAAAATTCTCGAAATTTCAAGAGAATCGTTAATTTAGTGGTTTTTAAGATGATTTTTTGAAAGCTTTCCAAGAGTTTTAGAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CTTCAACTCTGGTTTTCAATGGAGCGCGCTTGCATTTTACACTAATTTTGGCCGAGACCCCGCAAATTCCGGAGAAAAAAATTTGCGGGGAAAAAAAACTCCGGAGAAAAGTGGGCGGAGTCAGGGGCGGAGATTTTTTTCCGGAATTTGCGGGGTCTCATTTTGGCCATTTTTCGCCAATTTTCAGCTGAAAAAACGCCAAAAAACAAGGAAAATTCTCGAAATTTCRAGAGAATCGTTAATTTAGTGGTTTTTAAGATGATTTTTTGAAAGCTTTCCAAGAGTTTTAGAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36197</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>67258</contig_pos>
        <strand></strand>
        <context>TTTTTTGAAA[G/A]CTTTCCAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATTTCAAGAGAATCGTTAATTTAGTGGTTTTTAAGATGATTTTTTGAAA</left_flank>
        <right_flank>CTTTCCAAGAGTTTTAGAGAAAAATCGGCTGAAAACTCGTTTTTTTTGCA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAGCTAAAAAACCAATTTTCACCTCCATAATCAATTTCTCCGTTGAATTTCTCCCGTTTTCCCAATTTGACAATTTCGCTGAGTAATTTTTCCATTTTTATCTGAAATTCTAGTTTTTTTGCCCTTTTTATTCTTTATTGAGGTTCAATTCACCTATTTTACCTAAAAATCGCTGAAAATTGGCTGGAAACCCACTTTTTAAAATTGAAATTTCAAATTCGCGCCCTTCAACTCTGGTTTTCAATGGAGCGCGCTTGCATTTTACACTAATTTTGGCCGAGACCCCGCAAATTCCGGAGAAAAAAATTTGCGGGGAAAAAAAACTCCGGAGAAAAGTGGGCGGAGTCAGGGGCGGAGATTTTTTTCCGGAATTTGCGGGGTCTCATTTTGGCCATTTTTCGCCAATTTTCAGCTGAAAAAACGCCAAAAAACAAGGAAAATTCTCGAAATTTCAAGAGAATCGTTAATTTAGTGGTTTTTAAGATGATTTTTTGAAAGCTTTCCAAGAGTTTTAGAGAAAAATCGGCTGAAAACTCGTTTTTTTTGCAGGATTACGGTGCGTAGAAGTCCGCAAACACCGATGCAAAATATTGCGGACTAAAATGAAAAATTAAATAAATTTTTAGGTAAAAATTCTGGGGATAAAACCAAGGGAAACTGATAAAAATAATGAAAAAAGCTGCTTTCACAATTTTTAGGTGAAAATATTCATTTTTTTTTAGTAAAAAAAGAGCTAAAGCTATGGGAAATTTTCAGAGAAAAAGCGAGAGATCATTGGGAAGAAAAAGCAAAAATTCACAGAAAATTCTGGGGTGACTAGAACATGAGAAAATGCACAAATATGTGAAAAAACTGTCAAAAAACGGCGGTAAAAATTCAAAACATCAACTAATTCTGTCTTCCAGGAAACAGTGAATTCTCAAAAATCCAATCGGCCGATGTGTCTGCCATCATTTCCGATTTTTCCGAATTCGTCAATCGATCCATGATTTTTTCAG</canonical>
            <polymorphic>TTCAGCTAAAAAACCAATTTTCACCTCCATAATCAATTTCTCCGTTGAATTTCTCCCGTTTTCCCAATTTGACAATTTCGCTGAGTAATTTTTCCATTTTTATCTGAAATTCTAGTTTTTTTGCCCTTTTTATTCTTTATTGAGGTTCAATTCACCTATTTTACCTAAAAATCGCTGAAAATTGGCTGGAAACCCACTTTTTAAAATTGAAATTTCAAATTCGCGCCCTTCAACTCTGGTTTTCAATGGAGCGCGCTTGCATTTTACACTAATTTTGGCCGAGACCCCGCAAATTCCGGAGAAAAAAATTTGCGGGGAAAAAAAACTCCGGAGAAAAGTGGGCGGAGTCAGGGGCGGAGATTTTTTTCCGGAATTTGCGGGGTCTCATTTTGGCCATTTTTCGCCAATTTTCAGCTGAAAAAACGCCAAAAAACAAGGAAAATTCTCGAAATTTCAAGAGAATCGTTAATTTAGTGGTTTTTAAGATGATTTTTTGAAARCTTTCCAAGAGTTTTAGAGAAAAATCGGCTGAAAACTCGTTTTTTTTGCAGGATTACGGTGCGTAGAAGTCCGCAAACACCGATGCAAAATATTGCGGACTAAAATGAAAAATTAAATAAATTTTTAGGTAAAAATTCTGGGGATAAAACCAAGGGAAACTGATAAAAATAATGAAAAAAGCTGCTTTCACAATTTTTAGGTGAAAATATTCATTTTTTTTTAGTAAAAAAAGAGCTAAAGCTATGGGAAATTTTCAGAGAAAAAGCGAGAGATCATTGGGAAGAAAAAGCAAAAATTCACAGAAAATTCTGGGGTGACTAGAACATGAGAAAATGCACAAATATGTGAAAAAACTGTCAAAAAACGGCGGTAAAAATTCAAAACATCAACTAATTCTGTCTTCCAGGAAACAGTGAATTCTCAAAAATCCAATCGGCCGATGTGTCTGCCATCATTTCCGATTTTTCCGAATTCGTCAATCGATCCATGATTTTTTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>409 259 181 86 54 6 5</canonical_bands>
                <polymorphic_bands>409 267 259 54 6 5</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>196 180 153 115 93 86 63 54 28 21 6 5</canonical_bands>
                <polymorphic_bands>196 180 153 115 114 93 63 54 21 6 5</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCAACTCTGGTTTTCAATG</pcr_primer_p1>
		<pcr_primer_p2>GACTTCTACGCACCGTAATC</pcr_primer_p2>
		<pcr_amplicon_size>344</pcr_amplicon_size>
		<canonical_amplicon>CTTCAACTCTGGTTTTCAATGGAGCGCGCTTGCATTTTACACTAATTTTGGCCGAGACCCCGCAAATTCCGGAGAAAAAAATTTGCGGGGAAAAAAAACTCCGGAGAAAAGTGGGCGGAGTCAGGGGCGGAGATTTTTTTCCGGAATTTGCGGGGTCTCATTTTGGCCATTTTTCGCCAATTTTCAGCTGAAAAAACGCCAAAAAACAAGGAAAATTCTCGAAATTTCAAGAGAATCGTTAATTTAGTGGTTTTTAAGATGATTTTTTGAAAGCTTTCCAAGAGTTTTAGAGAAAAATCGGCTGAAAACTCGTTTTTTTTGCAGGATTACGGTGCGTAGAAGTC</canonical_amplicon>
		<polymorphic_amplicon>CTTCAACTCTGGTTTTCAATGGAGCGCGCTTGCATTTTACACTAATTTTGGCCGAGACCCCGCAAATTCCGGAGAAAAAAATTTGCGGGGAAAAAAAACTCCGGAGAAAAGTGGGCGGAGTCAGGGGCGGAGATTTTTTTCCGGAATTTGCGGGGTCTCATTTTGGCCATTTTTCGCCAATTTTCAGCTGAAAAAACGCCAAAAAACAAGGAAAATTCTCGAAATTTCAAGAGAATCGTTAATTTAGTGGTTTTTAAGATGATTTTTTGAAARCTTTCCAAGAGTTTTAGAGAAAAATCGGCTGAAAACTCGTTTTTTTTGCAGGATTACGGTGCGTAGAAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36198</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>69936</contig_pos>
        <strand></strand>
        <context>CAGTAATCAT[A/G]RTTTTTCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGTCTCGGCGATTTGGCTGGAAAAAACACACTAATTCAACAGTAATCAT</left_flank>
        <right_flank>ATTTTTCAAAAATTCGAATCTACAGTAATCCTACAGATGCCACGAGTTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAAGTCCCTAGGATATCAAGGAGGCCTGATAGCTGTGGAGTCTTCGTTGAATCACTGAAATTCCAAATCAATTCCATCACTTTATCCACGATTTTCAACAGTTCCGGCTTGAAAATCACAGCATAGGCTACACGGGGATCCTTCAGAAAAATACATAGAGAATGACAAATCCGGATGCAAAGTCTCATAGAAATCCCGTTTTTAGTCCAATCCAACAGCAAATCAATCATTTTTTGTGGTCCCTGAAGTGCACAAAATTGATCCAGGTTCAGGCACGATTCTTGATGCTTCTGATCGGATTCGACGGCTTGAACGAGGTCGTGGAGCGATTTTTCCACGTTTTCTTGTAGTTTTTCGTCGAATTTCGAACTGCAATATTTGTCGATTGCCATGTTGAACTCTCGGACGAATTTGGTACGATTTCGAGGGGAAGCAAGCGGTCCGGGAAGGGTCTCGGCGATTTGGCTGGAAAAAACACACTAATTCAACAGTAATCATAATTTTTCAAAAATTCGAATCTACAGTAATCCTACAGATGCCACGAGTTTAAATATTCGAGACTACAGTGATCCTACAGTAGTCACAAGTTTAAAAATTTGAAATCTACAGTAATCCTACCGTAATCACGACTTTTTGAAAATTCGAATCTACAGTAATCCTACCGTAATCAAAATCTTGAAAGATCCAAATCTACAGTAATCTTACCGTTATCACGATTCTTAAAAGTTCAAATATACATTAACCCTGCCGTAATCACACTTTCAAAATTCAAACCTACAGTAATCCTACAGTAATCACGCTTTTTCATAATTCGAATCTACAGTAACCCTACAGTTGTCACAATTTAAGAAATTTAGAATCTACAGTAACCCTGCCGTAATCAAGATTTCAGGAATTCAAATCTACAGTAATCCTACCGTAATCCCGACTTTTCTAAAATTCGAATCTACAGTAATCCTACAGTAATTACGATTTAGGAAATCAAATCTACAATAGTCT</canonical>
            <polymorphic>GCAAGTCCCTAGGATATCAAGGAGGCCTGATAGCTGTGGAGTCTTCGTTGAATCACTGAAATTCCAAATCAATTCCATCACTTTATCCACGATTTTCAACAGTTCCGGCTTGAAAATCACAGCATAGGCTACACGGGGATCCTTCAGAAAAATACATAGAGAATGACAAATCCGGATGCAAAGTCTCATAGAAATCCCGTTTTTAGTCCAATCCAACAGCAAATCAATCATTTTTTGTGGTCCCTGAAGTGCACAAAATTGATCCAGGTTCAGGCACGATTCTTGATGCTTCTGATCGGATTCGACGGCTTGAACGAGGTCGTGGAGCGATTTTTCCACGTTTTCTTGTAGTTTTTCGTCGAATTTCGAACTGCAATATTTGTCGATTGCCATGTTGAACTCTCGGACGAATTTGGTACGATTTCGAGGGGAAGCAAGCGGTCCGGGAAGGGTCTCGGCGATTTGGCTGGAAAAAACACACTAATTCAACAGTAATCATRATTTTTCAAAAATTCGAATCTACAGTAATCCTACAGATGCCACGAGTTTAAATATTCGAGACTACAGTGATCCTACAGTAGTCACAAGTTTAAAAATTTGAAATCTACAGTAATCCTACCGTAATCACGACTTTTTGAAAATTCGAATCTACAGTAATCCTACCGTAATCAAAATCTTGAAAGATCCAAATCTACAGTAATCTTACCGTTATCACGATTCTTAAAAGTTCAAATATACATTAACCCTGCCGTAATCACACTTTCAAAATTCAAACCTACAGTAATCCTACAGTAATCACGCTTTTTCATAATTCGAATCTACAGTAACCCTACAGTTGTCACAATTTAAGAAATTTAGAATCTACAGTAACCCTGCCGTAATCAAGATTTCAGGAATTCAAATCTACAGTAATCCTACCGTAATCCCGACTTTTCTAAAATTCGAATCTACAGTAATCCTACAGTAATTACGATTTAGGAAATCAAATCTACAATAGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>186 127 105 84 73 59 48 45 44 43 43 35 33 27 17 11 11 9</canonical_bands>
                <polymorphic_bands>186 127 105 84 73 59 48 45 44 43 43 35 33 28 27 11 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCCACGTTTTCTTGTAGT</pcr_primer_p1>
		<pcr_primer_p2>AATATTTAAACTCGTGGCATCT</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCCACGTTTTCTTGTAGTTTTTCGTCGAATTTCGAACTGCAATATTTGTCGATTGCCATGTTGAACTCTCGGACGAATTTGGTACGATTTCGAGGGGAAGCAAGCGGTCCGGGAAGGGTCTCGGCGATTTGGCTGGAAAAAACACACTAATTCAACAGTAATCATAATTTTTCAAAAATTCGAATCTACAGTAATCCTACAGATGCCACGAGTTTAAATATT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCCACGTTTTCTTGTAGTTTTTCGTCGAATTTCGAACTGCAATATTTGTCGATTGCCATGTTGAACTCTCGGACGAATTTGGTACGATTTCGAGGGGAAGCAAGCGGTCCGGGAAGGGTCTCGGCGATTTGGCTGGAAAAAACACACTAATTCAACAGTAATCATRATTTTTCAAAAATTCGAATCTACAGTAATCCTACAGATGCCACGAGTTTAAATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36199</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>69937</contig_pos>
        <strand>+</strand>
        <context>AGTAATCATR[A/G]TTTTTCAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTCTCGGCGATTTGGCTGGAAAAAACACACTAATTCAACAGTAATCATA</left_flank>
        <right_flank>TTTTTCAAAAATTCGAATCTACAGTAATCCTACAGATGCCACGAGTTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAGTCCCTAGGATATCAAGGAGGCCTGATAGCTGTGGAGTCTTCGTTGAATCACTGAAATTCCAAATCAATTCCATCACTTTATCCACGATTTTCAACAGTTCCGGCTTGAAAATCACAGCATAGGCTACACGGGGATCCTTCAGAAAAATACATAGAGAATGACAAATCCGGATGCAAAGTCTCATAGAAATCCCGTTTTTAGTCCAATCCAACAGCAAATCAATCATTTTTTGTGGTCCCTGAAGTGCACAAAATTGATCCAGGTTCAGGCACGATTCTTGATGCTTCTGATCGGATTCGACGGCTTGAACGAGGTCGTGGAGCGATTTTTCCACGTTTTCTTGTAGTTTTTCGTCGAATTTCGAACTGCAATATTTGTCGATTGCCATGTTGAACTCTCGGACGAATTTGGTACGATTTCGAGGGGAAGCAAGCGGTCCGGGAAGGGTCTCGGCGATTTGGCTGGAAAAAACACACTAATTCAACAGTAATCATAATTTTTCAAAAATTCGAATCTACAGTAATCCTACAGATGCCACGAGTTTAAATATTCGAGACTACAGTGATCCTACAGTAGTCACAAGTTTAAAAATTTGAAATCTACAGTAATCCTACCGTAATCACGACTTTTTGAAAATTCGAATCTACAGTAATCCTACCGTAATCAAAATCTTGAAAGATCCAAATCTACAGTAATCTTACCGTTATCACGATTCTTAAAAGTTCAAATATACATTAACCCTGCCGTAATCACACTTTCAAAATTCAAACCTACAGTAATCCTACAGTAATCACGCTTTTTCATAATTCGAATCTACAGTAACCCTACAGTTGTCACAATTTAAGAAATTTAGAATCTACAGTAACCCTGCCGTAATCAAGATTTCAGGAATTCAAATCTACAGTAATCCTACCGTAATCCCGACTTTTCTAAAATTCGAATCTACAGTAATCCTACAGTAATTACGATTTAGGAAATCAAATCTACAATAGTCTT</canonical>
            <polymorphic>CAAGTCCCTAGGATATCAAGGAGGCCTGATAGCTGTGGAGTCTTCGTTGAATCACTGAAATTCCAAATCAATTCCATCACTTTATCCACGATTTTCAACAGTTCCGGCTTGAAAATCACAGCATAGGCTACACGGGGATCCTTCAGAAAAATACATAGAGAATGACAAATCCGGATGCAAAGTCTCATAGAAATCCCGTTTTTAGTCCAATCCAACAGCAAATCAATCATTTTTTGTGGTCCCTGAAGTGCACAAAATTGATCCAGGTTCAGGCACGATTCTTGATGCTTCTGATCGGATTCGACGGCTTGAACGAGGTCGTGGAGCGATTTTTCCACGTTTTCTTGTAGTTTTTCGTCGAATTTCGAACTGCAATATTTGTCGATTGCCATGTTGAACTCTCGGACGAATTTGGTACGATTTCGAGGGGAAGCAAGCGGTCCGGGAAGGGTCTCGGCGATTTGGCTGGAAAAAACACACTAATTCAACAGTAATCATARTTTTTCAAAAATTCGAATCTACAGTAATCCTACAGATGCCACGAGTTTAAATATTCGAGACTACAGTGATCCTACAGTAGTCACAAGTTTAAAAATTTGAAATCTACAGTAATCCTACCGTAATCACGACTTTTTGAAAATTCGAATCTACAGTAATCCTACCGTAATCAAAATCTTGAAAGATCCAAATCTACAGTAATCTTACCGTTATCACGATTCTTAAAAGTTCAAATATACATTAACCCTGCCGTAATCACACTTTCAAAATTCAAACCTACAGTAATCCTACAGTAATCACGCTTTTTCATAATTCGAATCTACAGTAACCCTACAGTTGTCACAATTTAAGAAATTTAGAATCTACAGTAACCCTGCCGTAATCAAGATTTCAGGAATTCAAATCTACAGTAATCCTACCGTAATCCCGACTTTTCTAAAATTCGAATCTACAGTAATCCTACAGTAATTACGATTTAGGAAATCAAATCTACAATAGTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>186 127 105 84 73 58 48 45 44 43 43 36 33 27 17 11 11 9</canonical_bands>
                <polymorphic_bands>186 127 105 84 73 58 48 45 44 43 43 36 33 28 27 11 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCCACGTTTTCTTGTAGT</pcr_primer_p1>
		<pcr_primer_p2>AATATTTAAACTCGTGGCATCT</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCCACGTTTTCTTGTAGTTTTTCGTCGAATTTCGAACTGCAATATTTGTCGATTGCCATGTTGAACTCTCGGACGAATTTGGTACGATTTCGAGGGGAAGCAAGCGGTCCGGGAAGGGTCTCGGCGATTTGGCTGGAAAAAACACACTAATTCAACAGTAATCATAATTTTTCAAAAATTCGAATCTACAGTAATCCTACAGATGCCACGAGTTTAAATATT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCCACGTTTTCTTGTAGTTTTTCGTCGAATTTCGAACTGCAATATTTGTCGATTGCCATGTTGAACTCTCGGACGAATTTGGTACGATTTCGAGGGGAAGCAAGCGGTCCGGGAAGGGTCTCGGCGATTTGGCTGGAAAAAACACACTAATTCAACAGTAATCATARTTTTTCAAAAATTCGAATCTACAGTAATCCTACAGATGCCACGAGTTTAAATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36200</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>69961</contig_pos>
        <strand>+</strand>
        <context>CGAATCTACA[A/G]TAATCCTACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACACACTAATTCAACAGTAATCATAATTTTTCAAAAATTCGAATCTACA</left_flank>
        <right_flank>TAATCCTACAGATGCCACGAGTTTAAATATTCGAGACTACAGTGATCCTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTGATAGCTGTGGAGTCTTCGTTGAATCACTGAAATTCCAAATCAATTCCATCACTTTATCCACGATTTTCAACAGTTCCGGCTTGAAAATCACAGCATAGGCTACACGGGGATCCTTCAGAAAAATACATAGAGAATGACAAATCCGGATGCAAAGTCTCATAGAAATCCCGTTTTTAGTCCAATCCAACAGCAAATCAATCATTTTTTGTGGTCCCTGAAGTGCACAAAATTGATCCAGGTTCAGGCACGATTCTTGATGCTTCTGATCGGATTCGACGGCTTGAACGAGGTCGTGGAGCGATTTTTCCACGTTTTCTTGTAGTTTTTCGTCGAATTTCGAACTGCAATATTTGTCGATTGCCATGTTGAACTCTCGGACGAATTTGGTACGATTTCGAGGGGAAGCAAGCGGTCCGGGAAGGGTCTCGGCGATTTGGCTGGAAAAAACACACTAATTCAACAGTAATCATAATTTTTCAAAAATTCGAATCTACAGTAATCCTACAGATGCCACGAGTTTAAATATTCGAGACTACAGTGATCCTACAGTAGTCACAAGTTTAAAAATTTGAAATCTACAGTAATCCTACCGTAATCACGACTTTTTGAAAATTCGAATCTACAGTAATCCTACCGTAATCAAAATCTTGAAAGATCCAAATCTACAGTAATCTTACCGTTATCACGATTCTTAAAAGTTCAAATATACATTAACCCTGCCGTAATCACACTTTCAAAATTCAAACCTACAGTAATCCTACAGTAATCACGCTTTTTCATAATTCGAATCTACAGTAACCCTACAGTTGTCACAATTTAAGAAATTTAGAATCTACAGTAACCCTGCCGTAATCAAGATTTCAGGAATTCAAATCTACAGTAATCCTACCGTAATCCCGACTTTTCTAAAATTCGAATCTACAGTAATCCTACAGTAATTACGATTTAGGAAATCAAATCTACAATAGTCTTACAGTAATCAAAATATTAAAATTC</canonical>
            <polymorphic>CCTGATAGCTGTGGAGTCTTCGTTGAATCACTGAAATTCCAAATCAATTCCATCACTTTATCCACGATTTTCAACAGTTCCGGCTTGAAAATCACAGCATAGGCTACACGGGGATCCTTCAGAAAAATACATAGAGAATGACAAATCCGGATGCAAAGTCTCATAGAAATCCCGTTTTTAGTCCAATCCAACAGCAAATCAATCATTTTTTGTGGTCCCTGAAGTGCACAAAATTGATCCAGGTTCAGGCACGATTCTTGATGCTTCTGATCGGATTCGACGGCTTGAACGAGGTCGTGGAGCGATTTTTCCACGTTTTCTTGTAGTTTTTCGTCGAATTTCGAACTGCAATATTTGTCGATTGCCATGTTGAACTCTCGGACGAATTTGGTACGATTTCGAGGGGAAGCAAGCGGTCCGGGAAGGGTCTCGGCGATTTGGCTGGAAAAAACACACTAATTCAACAGTAATCATAATTTTTCAAAAATTCGAATCTACARTAATCCTACAGATGCCACGAGTTTAAATATTCGAGACTACAGTGATCCTACAGTAGTCACAAGTTTAAAAATTTGAAATCTACAGTAATCCTACCGTAATCACGACTTTTTGAAAATTCGAATCTACAGTAATCCTACCGTAATCAAAATCTTGAAAGATCCAAATCTACAGTAATCTTACCGTTATCACGATTCTTAAAAGTTCAAATATACATTAACCCTGCCGTAATCACACTTTCAAAATTCAAACCTACAGTAATCCTACAGTAATCACGCTTTTTCATAATTCGAATCTACAGTAACCCTACAGTTGTCACAATTTAAGAAATTTAGAATCTACAGTAACCCTGCCGTAATCAAGATTTCAGGAATTCAAATCTACAGTAATCCTACCGTAATCCCGACTTTTCTAAAATTCGAATCTACAGTAATCCTACAGTAATTACGATTTAGGAAATCAAATCTACAATAGTCTTACAGTAATCAAAATATTAAAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>495 84 66 44 44 43 42 32 32 32 31 11 11 11 11 11</canonical_bands>
                <polymorphic_bands>506 84 66 44 44 43 42 32 32 32 31 11 11 11 11</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>390 76 73 42 42 41 33 33 33 32 32 32 32 21 11 11 11 11 11 11 11 11</canonical_bands>
                <polymorphic_bands>390 76 75 73 42 41 33 33 32 32 32 32 21 11 11 11 11 11 11 11 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTGCCATGTTGAACTCTC</pcr_primer_p1>
		<pcr_primer_p2>TGGAGAAGATGTGAGACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>712</pcr_amplicon_size>
		<canonical_amplicon>GATTGCCATGTTGAACTCTCGGACGAATTTGGTACGATTTCGAGGGGAAGCAAGCGGTCCGGGAAGGGTCTCGGCGATTTGGCTGGAAAAAACACACTAATTCAACAGTAATCATAATTTTTCAAAAATTCGAATCTACAGTAATCCTACAGATGCCACGAG</canonical_amplicon>
		<polymorphic_amplicon>GATTGCCATGTTGAACTCTCGGACGAATTTGGTACGATTTCGAGGGGAAGCAAGCGGTCCGGGAAGGGTCTCGGCGATTTGGCTGGAAAAAACACACTAATTCAACAGTAATCATAATTTTTCAAAAATTCGAATCTACARTAATCCTACAGATGCCACGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36201</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>70122</contig_pos>
        <strand></strand>
        <context>cttgaaagat[C/T]yaaayctaca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAAATTCGAATCTACAGTAATCCTACCGTAATCAAAATCTTGAAAGAT</left_flank>
        <right_flank>CAAATCTACAGTAATCTTACCGTTATCACGATTCTTAAAAGTTCAAATAT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATAGAAATCCCGTTTTTAGTCCAATCCAACAGCAAATCAATCATTTTTTGTGGTCCCTGAAGTGCACAAAATTGATCCAGGTTCAGGCACGATTCTTGATGCTTCTGATCGGATTCGACGGCTTGAACGAGGTCGTGGAGCGATTTTTCCACGTTTTCTTGTAGTTTTTCGTCGAATTTCGAACTGCAATATTTGTCGATTGCCATGTTGAACTCTCGGACGAATTTGGTACGATTTCGAGGGGAAGCAAGCGGTCCGGGAAGGGTCTCGGCGATTTGGCTGGAAAAAACACACTAATTCAACAGTAATCATAATTTTTCAAAAATTCGAATCTACAGTAATCCTACAGATGCCACGAGTTTAAATATTCGAGACTACAGTGATCCTACAGTAGTCACAAGTTTAAAAATTTGAAATCTACAGTAATCCTACCGTAATCACGACTTTTTGAAAATTCGAATCTACAGTAATCCTACCGTAATCAAAATCTTGAAAGATCCAAATCTACAGTAATCTTACCGTTATCACGATTCTTAAAAGTTCAAATATACATTAACCCTGCCGTAATCACACTTTCAAAATTCAAACCTACAGTAATCCTACAGTAATCACGCTTTTTCATAATTCGAATCTACAGTAACCCTACAGTTGTCACAATTTAAGAAATTTAGAATCTACAGTAACCCTGCCGTAATCAAGATTTCAGGAATTCAAATCTACAGTAATCCTACCGTAATCCCGACTTTTCTAAAATTCGAATCTACAGTAATCCTACAGTAATTACGATTTAGGAAATCAAATCTACAATAGTCTTACAGTAATCAAAATATTAAAATTCGAATCTACAGTAATCCTAATCATTATTTTCCCCTAAAAAGAATAGCAAAAAAAAGTCTCACATCTTCTCCAAAATCTCCCGTGCCTTCATCGATTGCTCATCCTTCCTTCTGCTCTCCTCTTGTTCTTTTTTCTCAGCTTCTACCGTATCCCCCACCTCCT</canonical>
            <polymorphic>CATAGAAATCCCGTTTTTAGTCCAATCCAACAGCAAATCAATCATTTTTTGTGGTCCCTGAAGTGCACAAAATTGATCCAGGTTCAGGCACGATTCTTGATGCTTCTGATCGGATTCGACGGCTTGAACGAGGTCGTGGAGCGATTTTTCCACGTTTTCTTGTAGTTTTTCGTCGAATTTCGAACTGCAATATTTGTCGATTGCCATGTTGAACTCTCGGACGAATTTGGTACGATTTCGAGGGGAAGCAAGCGGTCCGGGAAGGGTCTCGGCGATTTGGCTGGAAAAAACACACTAATTCAACAGTAATCATAATTTTTCAAAAATTCGAATCTACAGTAATCCTACAGATGCCACGAGTTTAAATATTCGAGACTACAGTGATCCTACAGTAGTCACAAGTTTAAAAATTTGAAATCTACAGTAATCCTACCGTAATCACGACTTTTTGAAAATTCGAATCTACAGTAATCCTACCGTAATCAAAATCTTGAAAGATYCAAATCTACAGTAATCTTACCGTTATCACGATTCTTAAAAGTTCAAATATACATTAACCCTGCCGTAATCACACTTTCAAAATTCAAACCTACAGTAATCCTACAGTAATCACGCTTTTTCATAATTCGAATCTACAGTAACCCTACAGTTGTCACAATTTAAGAAATTTAGAATCTACAGTAACCCTGCCGTAATCAAGATTTCAGGAATTCAAATCTACAGTAATCCTACCGTAATCCCGACTTTTCTAAAATTCGAATCTACAGTAATCCTACAGTAATTACGATTTAGGAAATCAAATCTACAATAGTCTTACAGTAATCAAAATATTAAAATTCGAATCTACAGTAATCCTAATCATTATTTTCCCCTAAAAAGAATAGCAAAAAAAAGTCTCACATCTTCTCCAAAATCTCCCGTGCCTTCATCGATTGCTCATCCTTCCTTCTGCTCTCCTCTTGTTCTTTTTTCTCAGCTTCTACCGTATCCCCCACCTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>504 275 114 74 33</canonical_bands>
                <polymorphic_bands>618 275 74 33</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGATGCCACGAGTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGGAGAAGATGTGAGACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>563</pcr_amplicon_size>
		<canonical_amplicon>CAGATGCCACGAGTTTAAATATTCGAGACTACAGTGATCCTACAGTAGTCACAAGTTTAAAAATTTGAAATCTACAGTAATCCTACCGTAATCACGACTTTTTGAAAATTCGAATCTACAGTAATCCTACCGTAATCAAAATCTTGAAAGATCCAAATCTACAGTAATCTTACCGTTATCACGATTCTTAAAAGTTCAAATATACATTAACCCTGCCGTAATCACACTTTCAAAATTCAAACCTACAGTAATCCTACAGTAATCACGCTTTTTCATAATTCGAATCTACAGTAACCCTACAGTTGTCACAATTTAAGAAATTTAGAATCTACAGTAACCCTGCCGTAATCAAGATTTCAGGAATTCAAATCTACAGTAATCCTACCGTAATCCCGACTTTTCTAAAATTCGAATCTACAGTAATCCTACAGTAATTACGATTTAGGAAATCAAATCTACAATAGTCTTACAGTAATCAAAATATTAAAATTCGAATCTACAGTAATCCTAATCATTATTTTCCCCTAAAAAGAATAGCAAAAAAAAGTCTCACATCTTCTCCA</canonical_amplicon>
		<polymorphic_amplicon>CAGATGCCACGAGTTTAAATATTCGAGACTACAGTGATCCTACAGTAGTCACAAGTTTAAAAATTTGAAATCTACAGTAATCCTACCGTAATCACGACTTTTTGAAAATTCGAATCTACAGTAATCCTACCGTAATCAAAATCTTGAAAGATYCAAATCTACAGTAATCTTACCGTTATCACGATTCTTAAAAGTTCAAATATACATTAACCCTGCCGTAATCACACTTTCAAAATTCAAACCTACAGTAATCCTACAGTAATCACGCTTTTTCATAATTCGAATCTACAGTAACCCTACAGTTGTCACAATTTAAGAAATTTAGAATCTACAGTAACCCTGCCGTAATCAAGATTTCAGGAATTCAAATCTACAGTAATCCTACCGTAATCCCGACTTTTCTAAAATTCGAATCTACAGTAATCCTACAGTAATTACGATTTAGGAAATCAAATCTACAATAGTCTTACAGTAATCAAAATATTAAAATTCGAATCTACAGTAATCCTAATCATTATTTTCCCCTAAAAAGAATAGCAAAAAAAAGTCTCACATCTTCTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36202</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>70123</contig_pos>
        <strand></strand>
        <context>ttgaaagaty[C/T]aaayctacag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAATTCGAATCTACAGTAATCCTACCGTAATCAAAATCTTGAAAGATC</left_flank>
        <right_flank>AAATCTACAGTAATCTTACCGTTATCACGATTCTTAAAAGTTCAAATATA</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGAAATCCCGTTTTTAGTCCAATCCAACAGCAAATCAATCATTTTTTGTGGTCCCTGAAGTGCACAAAATTGATCCAGGTTCAGGCACGATTCTTGATGCTTCTGATCGGATTCGACGGCTTGAACGAGGTCGTGGAGCGATTTTTCCACGTTTTCTTGTAGTTTTTCGTCGAATTTCGAACTGCAATATTTGTCGATTGCCATGTTGAACTCTCGGACGAATTTGGTACGATTTCGAGGGGAAGCAAGCGGTCCGGGAAGGGTCTCGGCGATTTGGCTGGAAAAAACACACTAATTCAACAGTAATCATAATTTTTCAAAAATTCGAATCTACAGTAATCCTACAGATGCCACGAGTTTAAATATTCGAGACTACAGTGATCCTACAGTAGTCACAAGTTTAAAAATTTGAAATCTACAGTAATCCTACCGTAATCACGACTTTTTGAAAATTCGAATCTACAGTAATCCTACCGTAATCAAAATCTTGAAAGATCCAAATCTACAGTAATCTTACCGTTATCACGATTCTTAAAAGTTCAAATATACATTAACCCTGCCGTAATCACACTTTCAAAATTCAAACCTACAGTAATCCTACAGTAATCACGCTTTTTCATAATTCGAATCTACAGTAACCCTACAGTTGTCACAATTTAAGAAATTTAGAATCTACAGTAACCCTGCCGTAATCAAGATTTCAGGAATTCAAATCTACAGTAATCCTACCGTAATCCCGACTTTTCTAAAATTCGAATCTACAGTAATCCTACAGTAATTACGATTTAGGAAATCAAATCTACAATAGTCTTACAGTAATCAAAATATTAAAATTCGAATCTACAGTAATCCTAATCATTATTTTCCCCTAAAAAGAATAGCAAAAAAAAGTCTCACATCTTCTCCAAAATCTCCCGTGCCTTCATCGATTGCTCATCCTTCCTTCTGCTCTCCTCTTGTTCTTTTTTCTCAGCTTCTACCGTATCCCCCACCTCCTT</canonical>
            <polymorphic>ATAGAAATCCCGTTTTTAGTCCAATCCAACAGCAAATCAATCATTTTTTGTGGTCCCTGAAGTGCACAAAATTGATCCAGGTTCAGGCACGATTCTTGATGCTTCTGATCGGATTCGACGGCTTGAACGAGGTCGTGGAGCGATTTTTCCACGTTTTCTTGTAGTTTTTCGTCGAATTTCGAACTGCAATATTTGTCGATTGCCATGTTGAACTCTCGGACGAATTTGGTACGATTTCGAGGGGAAGCAAGCGGTCCGGGAAGGGTCTCGGCGATTTGGCTGGAAAAAACACACTAATTCAACAGTAATCATAATTTTTCAAAAATTCGAATCTACAGTAATCCTACAGATGCCACGAGTTTAAATATTCGAGACTACAGTGATCCTACAGTAGTCACAAGTTTAAAAATTTGAAATCTACAGTAATCCTACCGTAATCACGACTTTTTGAAAATTCGAATCTACAGTAATCCTACCGTAATCAAAATCTTGAAAGATCYAAATCTACAGTAATCTTACCGTTATCACGATTCTTAAAAGTTCAAATATACATTAACCCTGCCGTAATCACACTTTCAAAATTCAAACCTACAGTAATCCTACAGTAATCACGCTTTTTCATAATTCGAATCTACAGTAACCCTACAGTTGTCACAATTTAAGAAATTTAGAATCTACAGTAACCCTGCCGTAATCAAGATTTCAGGAATTCAAATCTACAGTAATCCTACCGTAATCCCGACTTTTCTAAAATTCGAATCTACAGTAATCCTACAGTAATTACGATTTAGGAAATCAAATCTACAATAGTCTTACAGTAATCAAAATATTAAAATTCGAATCTACAGTAATCCTAATCATTATTTTCCCCTAAAAAGAATAGCAAAAAAAAGTCTCACATCTTCTCCAAAATCTCCCGTGCCTTCATCGATTGCTCATCCTTCCTTCTGCTCTCCTCTTGTTCTTTTTTCTCAGCTTCTACCGTATCCCCCACCTCCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGATGCCACGAGTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGGAGAAGATGTGAGACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>563</pcr_amplicon_size>
		<canonical_amplicon>CAGATGCCACGAGTTTAAATATTCGAGACTACAGTGATCCTACAGTAGTCACAAGTTTAAAAATTTGAAATCTACAGTAATCCTACCGTAATCACGACTTTTTGAAAATTCGAATCTACAGTAATCCTACCGTAATCAAAATCTTGAAAGATCCAAATCTACAGTAATCTTACCGTTATCACGATTCTTAAAAGTTCAAATATACATTAACCCTGCCGTAATCACACTTTCAAAATTCAAACCTACAGTAATCCTACAGTAATCACGCTTTTTCATAATTCGAATCTACAGTAACCCTACAGTTGTCACAATTTAAGAAATTTAGAATCTACAGTAACCCTGCCGTAATCAAGATTTCAGGAATTCAAATCTACAGTAATCCTACCGTAATCCCGACTTTTCTAAAATTCGAATCTACAGTAATCCTACAGTAATTACGATTTAGGAAATCAAATCTACAATAGTCTTACAGTAATCAAAATATTAAAATTCGAATCTACAGTAATCCTAATCATTATTTTCCCCTAAAAAGAATAGCAAAAAAAAGTCTCACATCTTCTCCA</canonical_amplicon>
		<polymorphic_amplicon>CAGATGCCACGAGTTTAAATATTCGAGACTACAGTGATCCTACAGTAGTCACAAGTTTAAAAATTTGAAATCTACAGTAATCCTACCGTAATCACGACTTTTTGAAAATTCGAATCTACAGTAATCCTACCGTAATCAAAATCTTGAAAGATCYAAATCTACAGTAATCTTACCGTTATCACGATTCTTAAAAGTTCAAATATACATTAACCCTGCCGTAATCACACTTTCAAAATTCAAACCTACAGTAATCCTACAGTAATCACGCTTTTTCATAATTCGAATCTACAGTAACCCTACAGTTGTCACAATTTAAGAAATTTAGAATCTACAGTAACCCTGCCGTAATCAAGATTTCAGGAATTCAAATCTACAGTAATCCTACCGTAATCCCGACTTTTCTAAAATTCGAATCTACAGTAATCCTACAGTAATTACGATTTAGGAAATCAAATCTACAATAGTCTTACAGTAATCAAAATATTAAAATTCGAATCTACAGTAATCCTAATCATTATTTTCCCCTAAAAAGAATAGCAAAAAAAAGTCTCACATCTTCTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36203</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>70127</contig_pos>
        <strand></strand>
        <context>aagatyyaaa[T/C]ctacagtaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTCGAATCTACAGTAATCCTACCGTAATCAAAATCTTGAAAGATCCAAA</left_flank>
        <right_flank>CTACAGTAATCTTACCGTTATCACGATTCTTAAAAGTTCAAATATACATT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATCCCGTTTTTAGTCCAATCCAACAGCAAATCAATCATTTTTTGTGGTCCCTGAAGTGCACAAAATTGATCCAGGTTCAGGCACGATTCTTGATGCTTCTGATCGGATTCGACGGCTTGAACGAGGTCGTGGAGCGATTTTTCCACGTTTTCTTGTAGTTTTTCGTCGAATTTCGAACTGCAATATTTGTCGATTGCCATGTTGAACTCTCGGACGAATTTGGTACGATTTCGAGGGGAAGCAAGCGGTCCGGGAAGGGTCTCGGCGATTTGGCTGGAAAAAACACACTAATTCAACAGTAATCATAATTTTTCAAAAATTCGAATCTACAGTAATCCTACAGATGCCACGAGTTTAAATATTCGAGACTACAGTGATCCTACAGTAGTCACAAGTTTAAAAATTTGAAATCTACAGTAATCCTACCGTAATCACGACTTTTTGAAAATTCGAATCTACAGTAATCCTACCGTAATCAAAATCTTGAAAGATCCAAATCTACAGTAATCTTACCGTTATCACGATTCTTAAAAGTTCAAATATACATTAACCCTGCCGTAATCACACTTTCAAAATTCAAACCTACAGTAATCCTACAGTAATCACGCTTTTTCATAATTCGAATCTACAGTAACCCTACAGTTGTCACAATTTAAGAAATTTAGAATCTACAGTAACCCTGCCGTAATCAAGATTTCAGGAATTCAAATCTACAGTAATCCTACCGTAATCCCGACTTTTCTAAAATTCGAATCTACAGTAATCCTACAGTAATTACGATTTAGGAAATCAAATCTACAATAGTCTTACAGTAATCAAAATATTAAAATTCGAATCTACAGTAATCCTAATCATTATTTTCCCCTAAAAAGAATAGCAAAAAAAAGTCTCACATCTTCTCCAAAATCTCCCGTGCCTTCATCGATTGCTCATCCTTCCTTCTGCTCTCCTCTTGTTCTTTTTTCTCAGCTTCTACCGTATCCCCCACCTCCTTGAAA</canonical>
            <polymorphic>AAATCCCGTTTTTAGTCCAATCCAACAGCAAATCAATCATTTTTTGTGGTCCCTGAAGTGCACAAAATTGATCCAGGTTCAGGCACGATTCTTGATGCTTCTGATCGGATTCGACGGCTTGAACGAGGTCGTGGAGCGATTTTTCCACGTTTTCTTGTAGTTTTTCGTCGAATTTCGAACTGCAATATTTGTCGATTGCCATGTTGAACTCTCGGACGAATTTGGTACGATTTCGAGGGGAAGCAAGCGGTCCGGGAAGGGTCTCGGCGATTTGGCTGGAAAAAACACACTAATTCAACAGTAATCATAATTTTTCAAAAATTCGAATCTACAGTAATCCTACAGATGCCACGAGTTTAAATATTCGAGACTACAGTGATCCTACAGTAGTCACAAGTTTAAAAATTTGAAATCTACAGTAATCCTACCGTAATCACGACTTTTTGAAAATTCGAATCTACAGTAATCCTACCGTAATCAAAATCTTGAAAGATCCAAAYCTACAGTAATCTTACCGTTATCACGATTCTTAAAAGTTCAAATATACATTAACCCTGCCGTAATCACACTTTCAAAATTCAAACCTACAGTAATCCTACAGTAATCACGCTTTTTCATAATTCGAATCTACAGTAACCCTACAGTTGTCACAATTTAAGAAATTTAGAATCTACAGTAACCCTGCCGTAATCAAGATTTCAGGAATTCAAATCTACAGTAATCCTACCGTAATCCCGACTTTTCTAAAATTCGAATCTACAGTAATCCTACAGTAATTACGATTTAGGAAATCAAATCTACAATAGTCTTACAGTAATCAAAATATTAAAATTCGAATCTACAGTAATCCTAATCATTATTTTCCCCTAAAAAGAATAGCAAAAAAAAGTCTCACATCTTCTCCAAAATCTCCCGTGCCTTCATCGATTGCTCATCCTTCCTTCTGCTCTCCTCTTGTTCTTTTTTCTCAGCTTCTACCGTATCCCCCACCTCCTTGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATNNNNATC</site>
                <isoschizomers>
                    <enzyme>BsaBI</enzyme>
                    <enzyme>Bse8I</enzyme>
                    <enzyme>BseJI</enzyme>
                    <enzyme>BsiBI</enzyme>
                    <enzyme>BsrBRI</enzyme>
                    <enzyme>MamI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGATGCCACGAGTTTAAATA</pcr_primer_p1>
		<pcr_primer_p2>TGGAGAAGATGTGAGACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>563</pcr_amplicon_size>
		<canonical_amplicon>CAGATGCCACGAGTTTAAATATTCGAGACTACAGTGATCCTACAGTAGTCACAAGTTTAAAAATTTGAAATCTACAGTAATCCTACCGTAATCACGACTTTTTGAAAATTCGAATCTACAGTAATCCTACCGTAATCAAAATCTTGAAAGATCCAAATCTACAGTAATCTTACCGTTATCACGATTCTTAAAAGTTCAAATATACATTAACCCTGCCGTAATCACACTTTCAAAATTCAAACCTACAGTAATCCTACAGTAATCACGCTTTTTCATAATTCGAATCTACAGTAACCCTACAGTTGTCACAATTTAAGAAATTTAGAATCTACAGTAACCCTGCCGTAATCAAGATTTCAGGAATTCAAATCTACAGTAATCCTACCGTAATCCCGACTTTTCTAAAATTCGAATCTACAGTAATCCTACAGTAATTACGATTTAGGAAATCAAATCTACAATAGTCTTACAGTAATCAAAATATTAAAATTCGAATCTACAGTAATCCTAATCATTATTTTCCCCTAAAAAGAATAGCAAAAAAAAGTCTCACATCTTCTCCA</canonical_amplicon>
		<polymorphic_amplicon>CAGATGCCACGAGTTTAAATATTCGAGACTACAGTGATCCTACAGTAGTCACAAGTTTAAAAATTTGAAATCTACAGTAATCCTACCGTAATCACGACTTTTTGAAAATTCGAATCTACAGTAATCCTACCGTAATCAAAATCTTGAAAGATCCAAAYCTACAGTAATCTTACCGTTATCACGATTCTTAAAAGTTCAAATATACATTAACCCTGCCGTAATCACACTTTCAAAATTCAAACCTACAGTAATCCTACAGTAATCACGCTTTTTCATAATTCGAATCTACAGTAACCCTACAGTTGTCACAATTTAAGAAATTTAGAATCTACAGTAACCCTGCCGTAATCAAGATTTCAGGAATTCAAATCTACAGTAATCCTACCGTAATCCCGACTTTTCTAAAATTCGAATCTACAGTAATCCTACAGTAATTACGATTTAGGAAATCAAATCTACAATAGTCTTACAGTAATCAAAATATTAAAATTCGAATCTACAGTAATCCTAATCATTATTTTCCCCTAAAAAGAATAGCAAAAAAAAGTCTCACATCTTCTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36204</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>74048</contig_pos>
        <strand></strand>
        <context>agttaggcca[T/G]cattgtaaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GGTCATTCACCATGGTGGCCTAGAAAATTCACCTTGCGAAAGTTAGGCCA</left_flank>
        <right_flank>CATTGTAAATGGGCTAAAAGACATACTAGGTGAATACCAGGCTATTCCCG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGCTCTCTCTCCAAACTCGCCGCTTCCATTTCAACCTGTCTCTCGAGTTCCGCATCTATTTCCATGGATTCCGCTTGTTTTATTTCCAAATTCAAACTGTTTTCTTCCAGTGCCAATGACTCTTCCTCCTCTGTCATCTCTCTCCATTCATCATCTTTTTCCAGCTCTTCTGGAAGGGCCACATAGCCAAAAAGGGATCCATTTCGAGATTGGGTCGGTTGAGAAGCTGATGAAGAAGGCGTCGGGTCTGCTGGAACGACGTCTTCTGAATTTTCGGACGATGGGGCGTTGGGAGGATTCGATTCTTCGTTTATTGATTGAAGTTCGGCATTGGCAGAGGATGGGGAGGGTGTCTCCTAGAAACATCAATTTTAGAAGAAGGGATTTGTGTGCCTGTGTGTCCAGATGTCCACCAGACACATTAGATTAATATCAGGCTATTCCAAGGTCATTCACCATGGTGGCCTAGAAAATTCACCTTGCGAAAGTTAGGCCATCATTGTAAATGGGCTAAAAGACATACTAGGTGAATACCAGGCTATTCCCGGATCATTTACCATGATTGCCTGGAAAACTCAACTCGTAAAAGTTAGGCCACCATGTTGAAATGACCTAGAAAACGCAAAAGGTTAATATCAGCCCATTTCTAGATTCTTCGGCATGGTGGCCGAGAAAATACAACTTGCGAAAGTTAGGCCACCATGTCAAAATGACCTAGAAGACAGACTAGGTGAATAACAGGTTATTTCCAGGCCACTCTAACTGTTAGAATCTAACATGGTGGCCTAGGAAACACAGCTTGCAAAAAGGTTTCATTTTGCACCATTTCTAGGCCATTTACCATGGTGGCCTAGAAAACTCGACATAAACGTAAGTTTCACGTGACCTTCTTTTGCTGGGTTTTCTCCAGCCATGTGGCAGCTCTAGCCAGCTAGATCACAGATCCAGTCAGGTATATTCCTAGATTTTCCGAAAAATCAGTAGTTGTGTGTTAACT</canonical>
            <polymorphic>TTCTGCTCTCTCTCCAAACTCGCCGCTTCCATTTCAACCTGTCTCTCGAGTTCCGCATCTATTTCCATGGATTCCGCTTGTTTTATTTCCAAATTCAAACTGTTTTCTTCCAGTGCCAATGACTCTTCCTCCTCTGTCATCTCTCTCCATTCATCATCTTTTTCCAGCTCTTCTGGAAGGGCCACATAGCCAAAAAGGGATCCATTTCGAGATTGGGTCGGTTGAGAAGCTGATGAAGAAGGCGTCGGGTCTGCTGGAACGACGTCTTCTGAATTTTCGGACGATGGGGCGTTGGGAGGATTCGATTCTTCGTTTATTGATTGAAGTTCGGCATTGGCAGAGGATGGGGAGGGTGTCTCCTAGAAACATCAATTTTAGAAGAAGGGATTTGTGTGCCTGTGTGTCCAGATGTCCACCAGACACATTAGATTAATATCAGGCTATTCCAAGGTCATTCACCATGGTGGCCTAGAAAATTCACCTTGCGAAAGTTAGGCCAKCATTGTAAATGGGCTAAAAGACATACTAGGTGAATACCAGGCTATTCCCGGATCATTTACCATGATTGCCTGGAAAACTCAACTCGTAAAAGTTAGGCCACCATGTTGAAATGACCTAGAAAACGCAAAAGGTTAATATCAGCCCATTTCTAGATTCTTCGGCATGGTGGCCGAGAAAATACAACTTGCGAAAGTTAGGCCACCATGTCAAAATGACCTAGAAGACAGACTAGGTGAATAACAGGTTATTTCCAGGCCACTCTAACTGTTAGAATCTAACATGGTGGCCTAGGAAACACAGCTTGCAAAAAGGTTTCATTTTGCACCATTTCTAGGCCATTTACCATGGTGGCCTAGAAAACTCGACATAAACGTAAGTTTCACGTGACCTTCTTTTGCTGGGTTTTCTCCAGCCATGTGGCAGCTCTAGCCAGCTAGATCACAGATCCAGTCAGGTATATTCCTAGATTTTCCGAAAAATCAGTAGTTGTGTGTTAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTAGAAACATCAATTTTAGAAGAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAAACCCAGCAAAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>551</pcr_amplicon_size>
		<canonical_amplicon>CCTAGAAACATCAATTTTAGAAGAAGGGATTTGTGTGCCTGTGTGTCCAGATGTCCACCAGACACATTAGATTAATATCAGGCTATTCCAAGGTCATTCACCATGGTGGCCTAGAAAATTCACCTTGCGAAAGTTAGGCCATCATTGTAAATGGGCTAAAAGACATACTAGGTGAATACCAGGCTATTCCCGGATCATTTACCATGATTGCCTGGAAAACTCAACTCGTAAAAGTTAGGCCACCATGTTGAAATGACCTAGAAAACGCAAAAGGTTAATATCAGCCCATTTCTAGATTCTTCGGCATGGTGGCCGAGAAAATACAACTTGCGAAAGTTAGGCCACCATGTCAAAATGACCTAGAAGACAGACTAGGTGAATAACAGGTTATTTCCAGGCCACTCTAACTGTTAGAATCTAACATGGTGGCCTAGGAAACACAGCTTGCAAAAAGGTTTCATTTTGCACCATTTCTAGGCCATTTACCATGGTGGCCTAGAAAACTCGACATAAACGTAAGTTTCACGTGACCTTCTTTTGCTGGGTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>CCTAGAAACATCAATTTTAGAAGAAGGGATTTGTGTGCCTGTGTGTCCAGATGTCCACCAGACACATTAGATTAATATCAGGCTATTCCAAGGTCATTCACCATGGTGGCCTAGAAAATTCACCTTGCGAAAGTTAGGCCAKCATTGTAAATGGGCTAAAAGACATACTAGGTGAATACCAGGCTATTCCCGGATCATTTACCATGATTGCCTGGAAAACTCAACTCGTAAAAGTTAGGCCACCATGTTGAAATGACCTAGAAAACGCAAAAGGTTAATATCAGCCCATTTCTAGATTCTTCGGCATGGTGGCCGAGAAAATACAACTTGCGAAAGTTAGGCCACCATGTCAAAATGACCTAGAAGACAGACTAGGTGAATAACAGGTTATTTCCAGGCCACTCTAACTGTTAGAATCTAACATGGTGGCCTAGGAAACACAGCTTGCAAAAAGGTTTCATTTTGCACCATTTCTAGGCCATTTACCATGGTGGCCTAGAAAACTCGACATAAACGTAAGTTTCACGTGACCTTCTTTTGCTGGGTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36205</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>74109</contig_pos>
        <strand></strand>
        <context>gatcatttac[C/T]atgatkgcct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGCTAAAAGACATACTAGGTGAATACCAGGCTATTCCCGGATCATTTAC</left_flank>
        <right_flank>ATGATTGCCTGGAAAACTCAACTCGTAAAAGTTAGGCCACCATGTTGAAA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCCATGGATTCCGCTTGTTTTATTTCCAAATTCAAACTGTTTTCTTCCAGTGCCAATGACTCTTCCTCCTCTGTCATCTCTCTCCATTCATCATCTTTTTCCAGCTCTTCTGGAAGGGCCACATAGCCAAAAAGGGATCCATTTCGAGATTGGGTCGGTTGAGAAGCTGATGAAGAAGGCGTCGGGTCTGCTGGAACGACGTCTTCTGAATTTTCGGACGATGGGGCGTTGGGAGGATTCGATTCTTCGTTTATTGATTGAAGTTCGGCATTGGCAGAGGATGGGGAGGGTGTCTCCTAGAAACATCAATTTTAGAAGAAGGGATTTGTGTGCCTGTGTGTCCAGATGTCCACCAGACACATTAGATTAATATCAGGCTATTCCAAGGTCATTCACCATGGTGGCCTAGAAAATTCACCTTGCGAAAGTTAGGCCATCATTGTAAATGGGCTAAAAGACATACTAGGTGAATACCAGGCTATTCCCGGATCATTTACCATGATTGCCTGGAAAACTCAACTCGTAAAAGTTAGGCCACCATGTTGAAATGACCTAGAAAACGCAAAAGGTTAATATCAGCCCATTTCTAGATTCTTCGGCATGGTGGCCGAGAAAATACAACTTGCGAAAGTTAGGCCACCATGTCAAAATGACCTAGAAGACAGACTAGGTGAATAACAGGTTATTTCCAGGCCACTCTAACTGTTAGAATCTAACATGGTGGCCTAGGAAACACAGCTTGCAAAAAGGTTTCATTTTGCACCATTTCTAGGCCATTTACCATGGTGGCCTAGAAAACTCGACATAAACGTAAGTTTCACGTGACCTTCTTTTGCTGGGTTTTCTCCAGCCATGTGGCAGCTCTAGCCAGCTAGATCACAGATCCAGTCAGGTATATTCCTAGATTTTCCGAAAAATCAGTAGTTGTGTGTTAACTGGGCACTCTTCTGTTGTGTTTTTTAAAAAGTAAGCAAGTTTGCTTTGGCGGGAATTTCAAA</canonical>
            <polymorphic>TTTCCATGGATTCCGCTTGTTTTATTTCCAAATTCAAACTGTTTTCTTCCAGTGCCAATGACTCTTCCTCCTCTGTCATCTCTCTCCATTCATCATCTTTTTCCAGCTCTTCTGGAAGGGCCACATAGCCAAAAAGGGATCCATTTCGAGATTGGGTCGGTTGAGAAGCTGATGAAGAAGGCGTCGGGTCTGCTGGAACGACGTCTTCTGAATTTTCGGACGATGGGGCGTTGGGAGGATTCGATTCTTCGTTTATTGATTGAAGTTCGGCATTGGCAGAGGATGGGGAGGGTGTCTCCTAGAAACATCAATTTTAGAAGAAGGGATTTGTGTGCCTGTGTGTCCAGATGTCCACCAGACACATTAGATTAATATCAGGCTATTCCAAGGTCATTCACCATGGTGGCCTAGAAAATTCACCTTGCGAAAGTTAGGCCATCATTGTAAATGGGCTAAAAGACATACTAGGTGAATACCAGGCTATTCCCGGATCATTTACYATGATTGCCTGGAAAACTCAACTCGTAAAAGTTAGGCCACCATGTTGAAATGACCTAGAAAACGCAAAAGGTTAATATCAGCCCATTTCTAGATTCTTCGGCATGGTGGCCGAGAAAATACAACTTGCGAAAGTTAGGCCACCATGTCAAAATGACCTAGAAGACAGACTAGGTGAATAACAGGTTATTTCCAGGCCACTCTAACTGTTAGAATCTAACATGGTGGCCTAGGAAACACAGCTTGCAAAAAGGTTTCATTTTGCACCATTTCTAGGCCATTTACCATGGTGGCCTAGAAAACTCGACATAAACGTAAGTTTCACGTGACCTTCTTTTGCTGGGTTTTCTCCAGCCATGTGGCAGCTCTAGCCAGCTAGATCACAGATCCAGTCAGGTATATTCCTAGATTTTCCGAAAAATCAGTAGTTGTGTGTTAACTGGGCACTCTTCTGTTGTGTTTTTTAAAAAGTAAGCAAGTTTGCTTTGGCGGGAATTTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>394 146 101 76 70 65 61 41 41 5</canonical_bands>
                <polymorphic_bands>394 146 142 76 70 65 61 41 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTAGAAACATCAATTTTAGAAGAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAAACCCAGCAAAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>551</pcr_amplicon_size>
		<canonical_amplicon>CCTAGAAACATCAATTTTAGAAGAAGGGATTTGTGTGCCTGTGTGTCCAGATGTCCACCAGACACATTAGATTAATATCAGGCTATTCCAAGGTCATTCACCATGGTGGCCTAGAAAATTCACCTTGCGAAAGTTAGGCCATCATTGTAAATGGGCTAAAAGACATACTAGGTGAATACCAGGCTATTCCCGGATCATTTACCATGATTGCCTGGAAAACTCAACTCGTAAAAGTTAGGCCACCATGTTGAAATGACCTAGAAAACGCAAAAGGTTAATATCAGCCCATTTCTAGATTCTTCGGCATGGTGGCCGAGAAAATACAACTTGCGAAAGTTAGGCCACCATGTCAAAATGACCTAGAAGACAGACTAGGTGAATAACAGGTTATTTCCAGGCCACTCTAACTGTTAGAATCTAACATGGTGGCCTAGGAAACACAGCTTGCAAAAAGGTTTCATTTTGCACCATTTCTAGGCCATTTACCATGGTGGCCTAGAAAACTCGACATAAACGTAAGTTTCACGTGACCTTCTTTTGCTGGGTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>CCTAGAAACATCAATTTTAGAAGAAGGGATTTGTGTGCCTGTGTGTCCAGATGTCCACCAGACACATTAGATTAATATCAGGCTATTCCAAGGTCATTCACCATGGTGGCCTAGAAAATTCACCTTGCGAAAGTTAGGCCATCATTGTAAATGGGCTAAAAGACATACTAGGTGAATACCAGGCTATTCCCGGATCATTTACYATGATTGCCTGGAAAACTCAACTCGTAAAAGTTAGGCCACCATGTTGAAATGACCTAGAAAACGCAAAAGGTTAATATCAGCCCATTTCTAGATTCTTCGGCATGGTGGCCGAGAAAATACAACTTGCGAAAGTTAGGCCACCATGTCAAAATGACCTAGAAGACAGACTAGGTGAATAACAGGTTATTTCCAGGCCACTCTAACTGTTAGAATCTAACATGGTGGCCTAGGAAACACAGCTTGCAAAAAGGTTTCATTTTGCACCATTTCTAGGCCATTTACCATGGTGGCCTAGAAAACTCGACATAAACGTAAGTTTCACGTGACCTTCTTTTGCTGGGTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36206</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>74115</contig_pos>
        <strand></strand>
        <context>ttacyatgat[T/G]gcctggaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AAAGACATACTAGGTGAATACCAGGCTATTCCCGGATCATTTACCATGAT</left_flank>
        <right_flank>GCCTGGAAAACTCAACTCGTAAAAGTTAGGCCACCATGTTGAAATGACCT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGATTCCGCTTGTTTTATTTCCAAATTCAAACTGTTTTCTTCCAGTGCCAATGACTCTTCCTCCTCTGTCATCTCTCTCCATTCATCATCTTTTTCCAGCTCTTCTGGAAGGGCCACATAGCCAAAAAGGGATCCATTTCGAGATTGGGTCGGTTGAGAAGCTGATGAAGAAGGCGTCGGGTCTGCTGGAACGACGTCTTCTGAATTTTCGGACGATGGGGCGTTGGGAGGATTCGATTCTTCGTTTATTGATTGAAGTTCGGCATTGGCAGAGGATGGGGAGGGTGTCTCCTAGAAACATCAATTTTAGAAGAAGGGATTTGTGTGCCTGTGTGTCCAGATGTCCACCAGACACATTAGATTAATATCAGGCTATTCCAAGGTCATTCACCATGGTGGCCTAGAAAATTCACCTTGCGAAAGTTAGGCCATCATTGTAAATGGGCTAAAAGACATACTAGGTGAATACCAGGCTATTCCCGGATCATTTACCATGATTGCCTGGAAAACTCAACTCGTAAAAGTTAGGCCACCATGTTGAAATGACCTAGAAAACGCAAAAGGTTAATATCAGCCCATTTCTAGATTCTTCGGCATGGTGGCCGAGAAAATACAACTTGCGAAAGTTAGGCCACCATGTCAAAATGACCTAGAAGACAGACTAGGTGAATAACAGGTTATTTCCAGGCCACTCTAACTGTTAGAATCTAACATGGTGGCCTAGGAAACACAGCTTGCAAAAAGGTTTCATTTTGCACCATTTCTAGGCCATTTACCATGGTGGCCTAGAAAACTCGACATAAACGTAAGTTTCACGTGACCTTCTTTTGCTGGGTTTTCTCCAGCCATGTGGCAGCTCTAGCCAGCTAGATCACAGATCCAGTCAGGTATATTCCTAGATTTTCCGAAAAATCAGTAGTTGTGTGTTAACTGGGCACTCTTCTGTTGTGTTTTTTAAAAAGTAAGCAAGTTTGCTTTGGCGGGAATTTCAAAAAATTC</canonical>
            <polymorphic>TGGATTCCGCTTGTTTTATTTCCAAATTCAAACTGTTTTCTTCCAGTGCCAATGACTCTTCCTCCTCTGTCATCTCTCTCCATTCATCATCTTTTTCCAGCTCTTCTGGAAGGGCCACATAGCCAAAAAGGGATCCATTTCGAGATTGGGTCGGTTGAGAAGCTGATGAAGAAGGCGTCGGGTCTGCTGGAACGACGTCTTCTGAATTTTCGGACGATGGGGCGTTGGGAGGATTCGATTCTTCGTTTATTGATTGAAGTTCGGCATTGGCAGAGGATGGGGAGGGTGTCTCCTAGAAACATCAATTTTAGAAGAAGGGATTTGTGTGCCTGTGTGTCCAGATGTCCACCAGACACATTAGATTAATATCAGGCTATTCCAAGGTCATTCACCATGGTGGCCTAGAAAATTCACCTTGCGAAAGTTAGGCCATCATTGTAAATGGGCTAAAAGACATACTAGGTGAATACCAGGCTATTCCCGGATCATTTACCATGATKGCCTGGAAAACTCAACTCGTAAAAGTTAGGCCACCATGTTGAAATGACCTAGAAAACGCAAAAGGTTAATATCAGCCCATTTCTAGATTCTTCGGCATGGTGGCCGAGAAAATACAACTTGCGAAAGTTAGGCCACCATGTCAAAATGACCTAGAAGACAGACTAGGTGAATAACAGGTTATTTCCAGGCCACTCTAACTGTTAGAATCTAACATGGTGGCCTAGGAAACACAGCTTGCAAAAAGGTTTCATTTTGCACCATTTCTAGGCCATTTACCATGGTGGCCTAGAAAACTCGACATAAACGTAAGTTTCACGTGACCTTCTTTTGCTGGGTTTTCTCCAGCCATGTGGCAGCTCTAGCCAGCTAGATCACAGATCCAGTCAGGTATATTCCTAGATTTTCCGAAAAATCAGTAGTTGTGTGTTAACTGGGCACTCTTCTGTTGTGTTTTTTAAAAAGTAAGCAAGTTTGCTTTGGCGGGAATTTCAAAAAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTAGAAACATCAATTTTAGAAGAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAAACCCAGCAAAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>551</pcr_amplicon_size>
		<canonical_amplicon>CCTAGAAACATCAATTTTAGAAGAAGGGATTTGTGTGCCTGTGTGTCCAGATGTCCACCAGACACATTAGATTAATATCAGGCTATTCCAAGGTCATTCACCATGGTGGCCTAGAAAATTCACCTTGCGAAAGTTAGGCCATCATTGTAAATGGGCTAAAAGACATACTAGGTGAATACCAGGCTATTCCCGGATCATTTACCATGATTGCCTGGAAAACTCAACTCGTAAAAGTTAGGCCACCATGTTGAAATGACCTAGAAAACGCAAAAGGTTAATATCAGCCCATTTCTAGATTCTTCGGCATGGTGGCCGAGAAAATACAACTTGCGAAAGTTAGGCCACCATGTCAAAATGACCTAGAAGACAGACTAGGTGAATAACAGGTTATTTCCAGGCCACTCTAACTGTTAGAATCTAACATGGTGGCCTAGGAAACACAGCTTGCAAAAAGGTTTCATTTTGCACCATTTCTAGGCCATTTACCATGGTGGCCTAGAAAACTCGACATAAACGTAAGTTTCACGTGACCTTCTTTTGCTGGGTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>CCTAGAAACATCAATTTTAGAAGAAGGGATTTGTGTGCCTGTGTGTCCAGATGTCCACCAGACACATTAGATTAATATCAGGCTATTCCAAGGTCATTCACCATGGTGGCCTAGAAAATTCACCTTGCGAAAGTTAGGCCATCATTGTAAATGGGCTAAAAGACATACTAGGTGAATACCAGGCTATTCCCGGATCATTTACCATGATKGCCTGGAAAACTCAACTCGTAAAAGTTAGGCCACCATGTTGAAATGACCTAGAAAACGCAAAAGGTTAATATCAGCCCATTTCTAGATTCTTCGGCATGGTGGCCGAGAAAATACAACTTGCGAAAGTTAGGCCACCATGTCAAAATGACCTAGAAGACAGACTAGGTGAATAACAGGTTATTTCCAGGCCACTCTAACTGTTAGAATCTAACATGGTGGCCTAGGAAACACAGCTTGCAAAAAGGTTTCATTTTGCACCATTTCTAGGCCATTTACCATGGTGGCCTAGAAAACTCGACATAAACGTAAGTTTCACGTGACCTTCTTTTGCTGGGTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36207</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>74135</contig_pos>
        <strand></strand>
        <context>actcaactcg[T/C]aaaagttagg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCAGGCTATTCCCGGATCATTTACCATGATTGCCTGGAAAACTCAACTCG</left_flank>
        <right_flank>AAAAGTTAGGCCACCATGTTGAAATGACCTAGAAAACGCAAAAGGTTAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAAATTCAAACTGTTTTCTTCCAGTGCCAATGACTCTTCCTCCTCTGTCATCTCTCTCCATTCATCATCTTTTTCCAGCTCTTCTGGAAGGGCCACATAGCCAAAAAGGGATCCATTTCGAGATTGGGTCGGTTGAGAAGCTGATGAAGAAGGCGTCGGGTCTGCTGGAACGACGTCTTCTGAATTTTCGGACGATGGGGCGTTGGGAGGATTCGATTCTTCGTTTATTGATTGAAGTTCGGCATTGGCAGAGGATGGGGAGGGTGTCTCCTAGAAACATCAATTTTAGAAGAAGGGATTTGTGTGCCTGTGTGTCCAGATGTCCACCAGACACATTAGATTAATATCAGGCTATTCCAAGGTCATTCACCATGGTGGCCTAGAAAATTCACCTTGCGAAAGTTAGGCCATCATTGTAAATGGGCTAAAAGACATACTAGGTGAATACCAGGCTATTCCCGGATCATTTACCATGATTGCCTGGAAAACTCAACTCGTAAAAGTTAGGCCACCATGTTGAAATGACCTAGAAAACGCAAAAGGTTAATATCAGCCCATTTCTAGATTCTTCGGCATGGTGGCCGAGAAAATACAACTTGCGAAAGTTAGGCCACCATGTCAAAATGACCTAGAAGACAGACTAGGTGAATAACAGGTTATTTCCAGGCCACTCTAACTGTTAGAATCTAACATGGTGGCCTAGGAAACACAGCTTGCAAAAAGGTTTCATTTTGCACCATTTCTAGGCCATTTACCATGGTGGCCTAGAAAACTCGACATAAACGTAAGTTTCACGTGACCTTCTTTTGCTGGGTTTTCTCCAGCCATGTGGCAGCTCTAGCCAGCTAGATCACAGATCCAGTCAGGTATATTCCTAGATTTTCCGAAAAATCAGTAGTTGTGTGTTAACTGGGCACTCTTCTGTTGTGTTTTTTAAAAAGTAAGCAAGTTTGCTTTGGCGGGAATTTCAAAAAATTCAAAATTCCAGACTTTTTGAT</canonical>
            <polymorphic>TCCAAATTCAAACTGTTTTCTTCCAGTGCCAATGACTCTTCCTCCTCTGTCATCTCTCTCCATTCATCATCTTTTTCCAGCTCTTCTGGAAGGGCCACATAGCCAAAAAGGGATCCATTTCGAGATTGGGTCGGTTGAGAAGCTGATGAAGAAGGCGTCGGGTCTGCTGGAACGACGTCTTCTGAATTTTCGGACGATGGGGCGTTGGGAGGATTCGATTCTTCGTTTATTGATTGAAGTTCGGCATTGGCAGAGGATGGGGAGGGTGTCTCCTAGAAACATCAATTTTAGAAGAAGGGATTTGTGTGCCTGTGTGTCCAGATGTCCACCAGACACATTAGATTAATATCAGGCTATTCCAAGGTCATTCACCATGGTGGCCTAGAAAATTCACCTTGCGAAAGTTAGGCCATCATTGTAAATGGGCTAAAAGACATACTAGGTGAATACCAGGCTATTCCCGGATCATTTACCATGATTGCCTGGAAAACTCAACTCGYAAAAGTTAGGCCACCATGTTGAAATGACCTAGAAAACGCAAAAGGTTAATATCAGCCCATTTCTAGATTCTTCGGCATGGTGGCCGAGAAAATACAACTTGCGAAAGTTAGGCCACCATGTCAAAATGACCTAGAAGACAGACTAGGTGAATAACAGGTTATTTCCAGGCCACTCTAACTGTTAGAATCTAACATGGTGGCCTAGGAAACACAGCTTGCAAAAAGGTTTCATTTTGCACCATTTCTAGGCCATTTACCATGGTGGCCTAGAAAACTCGACATAAACGTAAGTTTCACGTGACCTTCTTTTGCTGGGTTTTCTCCAGCCATGTGGCAGCTCTAGCCAGCTAGATCACAGATCCAGTCAGGTATATTCCTAGATTTTCCGAAAAATCAGTAGTTGTGTGTTAACTGGGCACTCTTCTGTTGTGTTTTTTAAAAAGTAAGCAAGTTTGCTTTGGCGGGAATTTCAAAAAATTCAAAATTCCAGACTTTTTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTAGAAACATCAATTTTAGAAGAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAAACCCAGCAAAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>551</pcr_amplicon_size>
		<canonical_amplicon>CCTAGAAACATCAATTTTAGAAGAAGGGATTTGTGTGCCTGTGTGTCCAGATGTCCACCAGACACATTAGATTAATATCAGGCTATTCCAAGGTCATTCACCATGGTGGCCTAGAAAATTCACCTTGCGAAAGTTAGGCCATCATTGTAAATGGGCTAAAAGACATACTAGGTGAATACCAGGCTATTCCCGGATCATTTACCATGATTGCCTGGAAAACTCAACTCGTAAAAGTTAGGCCACCATGTTGAAATGACCTAGAAAACGCAAAAGGTTAATATCAGCCCATTTCTAGATTCTTCGGCATGGTGGCCGAGAAAATACAACTTGCGAAAGTTAGGCCACCATGTCAAAATGACCTAGAAGACAGACTAGGTGAATAACAGGTTATTTCCAGGCCACTCTAACTGTTAGAATCTAACATGGTGGCCTAGGAAACACAGCTTGCAAAAAGGTTTCATTTTGCACCATTTCTAGGCCATTTACCATGGTGGCCTAGAAAACTCGACATAAACGTAAGTTTCACGTGACCTTCTTTTGCTGGGTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>CCTAGAAACATCAATTTTAGAAGAAGGGATTTGTGTGCCTGTGTGTCCAGATGTCCACCAGACACATTAGATTAATATCAGGCTATTCCAAGGTCATTCACCATGGTGGCCTAGAAAATTCACCTTGCGAAAGTTAGGCCATCATTGTAAATGGGCTAAAAGACATACTAGGTGAATACCAGGCTATTCCCGGATCATTTACCATGATTGCCTGGAAAACTCAACTCGYAAAAGTTAGGCCACCATGTTGAAATGACCTAGAAAACGCAAAAGGTTAATATCAGCCCATTTCTAGATTCTTCGGCATGGTGGCCGAGAAAATACAACTTGCGAAAGTTAGGCCACCATGTCAAAATGACCTAGAAGACAGACTAGGTGAATAACAGGTTATTTCCAGGCCACTCTAACTGTTAGAATCTAACATGGTGGCCTAGGAAACACAGCTTGCAAAAAGGTTTCATTTTGCACCATTTCTAGGCCATTTACCATGGTGGCCTAGAAAACTCGACATAAACGTAAGTTTCACGTGACCTTCTTTTGCTGGGTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36208</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>136240</contig_pos>
        <strand>+</strand>
        <context>TTAAATTTTG[A/C]KCGTTTTCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAAAAGGTGGAGAATTCTAATTTTCTAGGATGAAATAGCTTAAATTTTG</left_flank>
        <right_flank>TCGTTTTCTACTGAGAACACTAACGATACGTGTGTTTAACGGAAGAACGC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTAGCCTTTCAAATCATTTTCAGGCCAGTACAACCTACCTTTTGCCCATTCCTAAACTTGACATTCAGCTCGTTGTACGGCACTCGAAACGTACAATAATCGAGCGACATTATATCACTTTTTCTTTTACTATGCTTTCCACCAACCGTCGTCCCAGCACCCGGCGGAACTTCCGATGTGGACGGTTCGCCACTAGCCATTCTTTTTACAGATTTTCAATTCTCAAGAAAAAATAAGTTAGAATATAAGAGAAACACGTAGAATTCAGGTCGATATAGCATAGAAAATTGAAACAGAAAAATATTAGAATTATGAAGAATCCGTTGTTGAAGAAGGTTAACCCAGCACCAGCTTGAACACAATCACCACGATGTTGATGGCGATGAGTGGCACTGAAAAAATATAAAACAATTATTAAGAAGAAGAGGATTTTAAAGAAAAAACTGAGAAAAAGGTGGAGAATTCTAATTTTCTAGGATGAAATAGCTTAAATTTTGCTCGTTTTCTACTGAGAACACTAACGATACGTGTGTTTAACGGAAGAACGCATAGAATCGATAGGAACACGAGGTGTTGCGGTAGAGCGCAAACGCGAGGGGGGACGCGAACGGGAGGAGAGGAAAATAGACGATTTCCGGGGGAAAATAGAAGGAAAAATGCCAGAAAAAATCTCCAAAAATGAGAAGGAGTTTTAGCTTGCAAAGCGGAATATTCTGCGAAGAAAATGCGGTGAAAAATCGGAATTTTCGCTGATTTTTGGGAATTTTTGAATAGAATTTTTATGATTTTAACTCATATTTTCCACAATTTCCCTCTCAATTCATCTAATTCTCGGCATACTTCGCATCACAGTTTGCACGGCGAAAATGAGCGAAACGAGTTGATCCTTAACGGTACTGGAGCCATCGAACGAGTGGGAAGGAGCGCCGAGACCGTACTGAAAAATCGATATTCTAAAATTTAGAAGCTTCTGAAAAATACCTTTTTCAAGAATCGCT</canonical>
            <polymorphic>GATTAGCCTTTCAAATCATTTTCAGGCCAGTACAACCTACCTTTTGCCCATTCCTAAACTTGACATTCAGCTCGTTGTACGGCACTCGAAACGTACAATAATCGAGCGACATTATATCACTTTTTCTTTTACTATGCTTTCCACCAACCGTCGTCCCAGCACCCGGCGGAACTTCCGATGTGGACGGTTCGCCACTAGCCATTCTTTTTACAGATTTTCAATTCTCAAGAAAAAATAAGTTAGAATATAAGAGAAACACGTAGAATTCAGGTCGATATAGCATAGAAAATTGAAACAGAAAAATATTAGAATTATGAAGAATCCGTTGTTGAAGAAGGTTAACCCAGCACCAGCTTGAACACAATCACCACGATGTTGATGGCGATGAGTGGCACTGAAAAAATATAAAACAATTATTAAGAAGAAGAGGATTTTAAAGAAAAAACTGAGAAAAAGGTGGAGAATTCTAATTTTCTAGGATGAAATAGCTTAAATTTTGMTCGTTTTCTACTGAGAACACTAACGATACGTGTGTTTAACGGAAGAACGCATAGAATCGATAGGAACACGAGGTGTTGCGGTAGAGCGCAAACGCGAGGGGGGACGCGAACGGGAGGAGAGGAAAATAGACGATTTCCGGGGGAAAATAGAAGGAAAAATGCCAGAAAAAATCTCCAAAAATGAGAAGGAGTTTTAGCTTGCAAAGCGGAATATTCTGCGAAGAAAATGCGGTGAAAAATCGGAATTTTCGCTGATTTTTGGGAATTTTTGAATAGAATTTTTATGATTTTAACTCATATTTTCCACAATTTCCCTCTCAATTCATCTAATTCTCGGCATACTTCGCATCACAGTTTGCACGGCGAAAATGAGCGAAACGAGTTGATCCTTAACGGTACTGGAGCCATCGAACGAGTGGGAAGGAGCGCCGAGACCGTACTGAAAAATCGATATTCTAAAATTTAGAAGCTTCTGAAAAATACCTTTTTCAAGAATCGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTGAGAAAAAGGTGGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>ACTCCTTCTCATTTTTGGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACTGAGAAAAAGGTGGAGAATTCTAATTTTCTAGGATGAAATAGCTTAAATTTTGCTCGTTTTCTACTGAGAACACTAACGATACGTGTGTTTAACGGAAGAACGCATAGAATCGATAGGAACACGAGGTGTTGCGGTAGAGCGCAAACGCGAGGGGGGACGCGAACGGGAGGAGAGGAAAATAGACGATTTCCGGGGGAAAATAGAAGGAAAAATGCCAGAAAAAATCTCCAAAAATGAGAAGGAGT</canonical_amplicon>
		<polymorphic_amplicon>AACTGAGAAAAAGGTGGAGAATTCTAATTTTCTAGGATGAAATAGCTTAAATTTTGMTCGTTTTCTACTGAGAACACTAACGATACGTGTGTTTAACGGAAGAACGCATAGAATCGATAGGAACACGAGGTGTTGCGGTAGAGCGCAAACGCGAGGGGGGACGCGAACGGGAGGAGAGGAAAATAGACGATTTCCGGGGGAAAATAGAAGGAAAAATGCCAGAAAAAATCTCCAAAAATGAGAAGGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36209</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>136241</contig_pos>
        <strand>+</strand>
        <context>TAAATTTTGM[G/T]CGTTTTCTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAAGGTGGAGAATTCTAATTTTCTAGGATGAAATAGCTTAAATTTTGC</left_flank>
        <right_flank>CGTTTTCTACTGAGAACACTAACGATACGTGTGTTTAACGGAAGAACGCA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAGCCTTTCAAATCATTTTCAGGCCAGTACAACCTACCTTTTGCCCATTCCTAAACTTGACATTCAGCTCGTTGTACGGCACTCGAAACGTACAATAATCGAGCGACATTATATCACTTTTTCTTTTACTATGCTTTCCACCAACCGTCGTCCCAGCACCCGGCGGAACTTCCGATGTGGACGGTTCGCCACTAGCCATTCTTTTTACAGATTTTCAATTCTCAAGAAAAAATAAGTTAGAATATAAGAGAAACACGTAGAATTCAGGTCGATATAGCATAGAAAATTGAAACAGAAAAATATTAGAATTATGAAGAATCCGTTGTTGAAGAAGGTTAACCCAGCACCAGCTTGAACACAATCACCACGATGTTGATGGCGATGAGTGGCACTGAAAAAATATAAAACAATTATTAAGAAGAAGAGGATTTTAAAGAAAAAACTGAGAAAAAGGTGGAGAATTCTAATTTTCTAGGATGAAATAGCTTAAATTTTGCTCGTTTTCTACTGAGAACACTAACGATACGTGTGTTTAACGGAAGAACGCATAGAATCGATAGGAACACGAGGTGTTGCGGTAGAGCGCAAACGCGAGGGGGGACGCGAACGGGAGGAGAGGAAAATAGACGATTTCCGGGGGAAAATAGAAGGAAAAATGCCAGAAAAAATCTCCAAAAATGAGAAGGAGTTTTAGCTTGCAAAGCGGAATATTCTGCGAAGAAAATGCGGTGAAAAATCGGAATTTTCGCTGATTTTTGGGAATTTTTGAATAGAATTTTTATGATTTTAACTCATATTTTCCACAATTTCCCTCTCAATTCATCTAATTCTCGGCATACTTCGCATCACAGTTTGCACGGCGAAAATGAGCGAAACGAGTTGATCCTTAACGGTACTGGAGCCATCGAACGAGTGGGAAGGAGCGCCGAGACCGTACTGAAAAATCGATATTCTAAAATTTAGAAGCTTCTGAAAAATACCTTTTTCAAGAATCGCTC</canonical>
            <polymorphic>ATTAGCCTTTCAAATCATTTTCAGGCCAGTACAACCTACCTTTTGCCCATTCCTAAACTTGACATTCAGCTCGTTGTACGGCACTCGAAACGTACAATAATCGAGCGACATTATATCACTTTTTCTTTTACTATGCTTTCCACCAACCGTCGTCCCAGCACCCGGCGGAACTTCCGATGTGGACGGTTCGCCACTAGCCATTCTTTTTACAGATTTTCAATTCTCAAGAAAAAATAAGTTAGAATATAAGAGAAACACGTAGAATTCAGGTCGATATAGCATAGAAAATTGAAACAGAAAAATATTAGAATTATGAAGAATCCGTTGTTGAAGAAGGTTAACCCAGCACCAGCTTGAACACAATCACCACGATGTTGATGGCGATGAGTGGCACTGAAAAAATATAAAACAATTATTAAGAAGAAGAGGATTTTAAAGAAAAAACTGAGAAAAAGGTGGAGAATTCTAATTTTCTAGGATGAAATAGCTTAAATTTTGCKCGTTTTCTACTGAGAACACTAACGATACGTGTGTTTAACGGAAGAACGCATAGAATCGATAGGAACACGAGGTGTTGCGGTAGAGCGCAAACGCGAGGGGGGACGCGAACGGGAGGAGAGGAAAATAGACGATTTCCGGGGGAAAATAGAAGGAAAAATGCCAGAAAAAATCTCCAAAAATGAGAAGGAGTTTTAGCTTGCAAAGCGGAATATTCTGCGAAGAAAATGCGGTGAAAAATCGGAATTTTCGCTGATTTTTGGGAATTTTTGAATAGAATTTTTATGATTTTAACTCATATTTTCCACAATTTCCCTCTCAATTCATCTAATTCTCGGCATACTTCGCATCACAGTTTGCACGGCGAAAATGAGCGAAACGAGTTGATCCTTAACGGTACTGGAGCCATCGAACGAGTGGGAAGGAGCGCCGAGACCGTACTGAAAAATCGATATTCTAAAATTTAGAAGCTTCTGAAAAATACCTTTTTCAAGAATCGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTGAGAAAAAGGTGGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>ACTCCTTCTCATTTTTGGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACTGAGAAAAAGGTGGAGAATTCTAATTTTCTAGGATGAAATAGCTTAAATTTTGCTCGTTTTCTACTGAGAACACTAACGATACGTGTGTTTAACGGAAGAACGCATAGAATCGATAGGAACACGAGGTGTTGCGGTAGAGCGCAAACGCGAGGGGGGACGCGAACGGGAGGAGAGGAAAATAGACGATTTCCGGGGGAAAATAGAAGGAAAAATGCCAGAAAAAATCTCCAAAAATGAGAAGGAGT</canonical_amplicon>
		<polymorphic_amplicon>AACTGAGAAAAAGGTGGAGAATTCTAATTTTCTAGGATGAAATAGCTTAAATTTTGCKCGTTTTCTACTGAGAACACTAACGATACGTGTGTTTAACGGAAGAACGCATAGAATCGATAGGAACACGAGGTGTTGCGGTAGAGCGCAAACGCGAGGGGGGACGCGAACGGGAGGAGAGGAAAATAGACGATTTCCGGGGGAAAATAGAAGGAAAAATGCCAGAAAAAATCTCCAAAAATGAGAAGGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36210</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>136456</contig_pos>
        <strand>+</strand>
        <context>GCGGAATATT[C/T]TGCGAAGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAATCTCCAAAAATGAGAAGGAGTTTTAGCTTGCAAAGCGGAATATT</left_flank>
        <right_flank>TGCGAAGAAAATGCGGTGAAAAATCGGAATTTTCGCTGATTTTTGGGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAATTCTCAAGAAAAAATAAGTTAGAATATAAGAGAAACACGTAGAATTCAGGTCGATATAGCATAGAAAATTGAAACAGAAAAATATTAGAATTATGAAGAATCCGTTGTTGAAGAAGGTTAACCCAGCACCAGCTTGAACACAATCACCACGATGTTGATGGCGATGAGTGGCACTGAAAAAATATAAAACAATTATTAAGAAGAAGAGGATTTTAAAGAAAAAACTGAGAAAAAGGTGGAGAATTCTAATTTTCTAGGATGAAATAGCTTAAATTTTGCTCGTTTTCTACTGAGAACACTAACGATACGTGTGTTTAACGGAAGAACGCATAGAATCGATAGGAACACGAGGTGTTGCGGTAGAGCGCAAACGCGAGGGGGGACGCGAACGGGAGGAGAGGAAAATAGACGATTTCCGGGGGAAAATAGAAGGAAAAATGCCAGAAAAAATCTCCAAAAATGAGAAGGAGTTTTAGCTTGCAAAGCGGAATATTCTGCGAAGAAAATGCGGTGAAAAATCGGAATTTTCGCTGATTTTTGGGAATTTTTGAATAGAATTTTTATGATTTTAACTCATATTTTCCACAATTTCCCTCTCAATTCATCTAATTCTCGGCATACTTCGCATCACAGTTTGCACGGCGAAAATGAGCGAAACGAGTTGATCCTTAACGGTACTGGAGCCATCGAACGAGTGGGAAGGAGCGCCGAGACCGTACTGAAAAATCGATATTCTAAAATTTAGAAGCTTCTGAAAAATACCTTTTTCAAGAATCGCTCACGATGAAGAATGGCGATGCCGTTGAGGACGAGCAGCGCGGCTTCGAGAAGAGCGTAGAAGGAAAGGGCCATCTGGAAATATCACTGAATCTGGAATTAGAGGAAAAAAGCGTAGGATTCGAAGATAAGTATCGTATAAGAAGGGAGTAAATTTTGAATTTTCCCGGATTTTTTTCCAAATTTCCAATTTTTTTTTGTTCAATGAAGTTATTTTT</canonical>
            <polymorphic>TTCAATTCTCAAGAAAAAATAAGTTAGAATATAAGAGAAACACGTAGAATTCAGGTCGATATAGCATAGAAAATTGAAACAGAAAAATATTAGAATTATGAAGAATCCGTTGTTGAAGAAGGTTAACCCAGCACCAGCTTGAACACAATCACCACGATGTTGATGGCGATGAGTGGCACTGAAAAAATATAAAACAATTATTAAGAAGAAGAGGATTTTAAAGAAAAAACTGAGAAAAAGGTGGAGAATTCTAATTTTCTAGGATGAAATAGCTTAAATTTTGCTCGTTTTCTACTGAGAACACTAACGATACGTGTGTTTAACGGAAGAACGCATAGAATCGATAGGAACACGAGGTGTTGCGGTAGAGCGCAAACGCGAGGGGGGACGCGAACGGGAGGAGAGGAAAATAGACGATTTCCGGGGGAAAATAGAAGGAAAAATGCCAGAAAAAATCTCCAAAAATGAGAAGGAGTTTTAGCTTGCAAAGCGGAATATTYTGCGAAGAAAATGCGGTGAAAAATCGGAATTTTCGCTGATTTTTGGGAATTTTTGAATAGAATTTTTATGATTTTAACTCATATTTTCCACAATTTCCCTCTCAATTCATCTAATTCTCGGCATACTTCGCATCACAGTTTGCACGGCGAAAATGAGCGAAACGAGTTGATCCTTAACGGTACTGGAGCCATCGAACGAGTGGGAAGGAGCGCCGAGACCGTACTGAAAAATCGATATTCTAAAATTTAGAAGCTTCTGAAAAATACCTTTTTCAAGAATCGCTCACGATGAAGAATGGCGATGCCGTTGAGGACGAGCAGCGCGGCTTCGAGAAGAGCGTAGAAGGAAAGGGCCATCTGGAAATATCACTGAATCTGGAATTAGAGGAAAAAAGCGTAGGATTCGAAGATAAGTATCGTATAAGAAGGGAGTAAATTTTGAATTTTCCCGGATTTTTTTCCAAATTTCCAATTTTTTTTTGTTCAATGAAGTTATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACGTGTGTTTAACGGAAGAA</pcr_primer_p1>
		<pcr_primer_p2>CTATTCAAAAATTCCCAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACGTGTGTTTAACGGAAGAACGCATAGAATCGATAGGAACACGAGGTGTTGCGGTAGAGCGCAAACGCGAGGGGGGACGCGAACGGGAGGAGAGGAAAATAGACGATTTCCGGGGGAAAATAGAAGGAAAAATGCCAGAAAAAATCTCCAAAAATGAGAAGGAGTTTTAGCTTGCAAAGCGGAATATTCTGCGAAGAAAATGCGGTGAAAAATCGGAATTTTCGCTGATTTTTGGGAATTTTTGAATAG</canonical_amplicon>
		<polymorphic_amplicon>TACGTGTGTTTAACGGAAGAACGCATAGAATCGATAGGAACACGAGGTGTTGCGGTAGAGCGCAAACGCGAGGGGGGACGCGAACGGGAGGAGAGGAAAATAGACGATTTCCGGGGGAAAATAGAAGGAAAAATGCCAGAAAAAATCTCCAAAAATGAGAAGGAGTTTTAGCTTGCAAAGCGGAATATTYTGCGAAGAAAATGCGGTGAAAAATCGGAATTTTCGCTGATTTTTGGGAATTTTTGAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36211</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>136489</contig_pos>
        <strand></strand>
        <context>ATCGGAATTT[T/A]WGCTGATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTGCAAAGCGGAATATTCTGCGAAGAAAATGCGGTGAAAAATCGGAATTT</left_flank>
        <right_flank>CGCTGATTTTTGGGAATTTTTGAATAGAATTTTTATGATTTTAACTCATA</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGAAACACGTAGAATTCAGGTCGATATAGCATAGAAAATTGAAACAGAAAAATATTAGAATTATGAAGAATCCGTTGTTGAAGAAGGTTAACCCAGCACCAGCTTGAACACAATCACCACGATGTTGATGGCGATGAGTGGCACTGAAAAAATATAAAACAATTATTAAGAAGAAGAGGATTTTAAAGAAAAAACTGAGAAAAAGGTGGAGAATTCTAATTTTCTAGGATGAAATAGCTTAAATTTTGCTCGTTTTCTACTGAGAACACTAACGATACGTGTGTTTAACGGAAGAACGCATAGAATCGATAGGAACACGAGGTGTTGCGGTAGAGCGCAAACGCGAGGGGGGACGCGAACGGGAGGAGAGGAAAATAGACGATTTCCGGGGGAAAATAGAAGGAAAAATGCCAGAAAAAATCTCCAAAAATGAGAAGGAGTTTTAGCTTGCAAAGCGGAATATTCTGCGAAGAAAATGCGGTGAAAAATCGGAATTTTCGCTGATTTTTGGGAATTTTTGAATAGAATTTTTATGATTTTAACTCATATTTTCCACAATTTCCCTCTCAATTCATCTAATTCTCGGCATACTTCGCATCACAGTTTGCACGGCGAAAATGAGCGAAACGAGTTGATCCTTAACGGTACTGGAGCCATCGAACGAGTGGGAAGGAGCGCCGAGACCGTACTGAAAAATCGATATTCTAAAATTTAGAAGCTTCTGAAAAATACCTTTTTCAAGAATCGCTCACGATGAAGAATGGCGATGCCGTTGAGGACGAGCAGCGCGGCTTCGAGAAGAGCGTAGAAGGAAAGGGCCATCTGGAAATATCACTGAATCTGGAATTAGAGGAAAAAAGCGTAGGATTCGAAGATAAGTATCGTATAAGAAGGGAGTAAATTTTGAATTTTCCCGGATTTTTTTCCAAATTTCCAATTTTTTTTTGTTCAATGAAGTTATTTTTCTGCTTTTTAACAAACAAATACGACTCTGAAAA</canonical>
            <polymorphic>AGAGAAACACGTAGAATTCAGGTCGATATAGCATAGAAAATTGAAACAGAAAAATATTAGAATTATGAAGAATCCGTTGTTGAAGAAGGTTAACCCAGCACCAGCTTGAACACAATCACCACGATGTTGATGGCGATGAGTGGCACTGAAAAAATATAAAACAATTATTAAGAAGAAGAGGATTTTAAAGAAAAAACTGAGAAAAAGGTGGAGAATTCTAATTTTCTAGGATGAAATAGCTTAAATTTTGCTCGTTTTCTACTGAGAACACTAACGATACGTGTGTTTAACGGAAGAACGCATAGAATCGATAGGAACACGAGGTGTTGCGGTAGAGCGCAAACGCGAGGGGGGACGCGAACGGGAGGAGAGGAAAATAGACGATTTCCGGGGGAAAATAGAAGGAAAAATGCCAGAAAAAATCTCCAAAAATGAGAAGGAGTTTTAGCTTGCAAAGCGGAATATTCTGCGAAGAAAATGCGGTGAAAAATCGGAATTTWCGCTGATTTTTGGGAATTTTTGAATAGAATTTTTATGATTTTAACTCATATTTTCCACAATTTCCCTCTCAATTCATCTAATTCTCGGCATACTTCGCATCACAGTTTGCACGGCGAAAATGAGCGAAACGAGTTGATCCTTAACGGTACTGGAGCCATCGAACGAGTGGGAAGGAGCGCCGAGACCGTACTGAAAAATCGATATTCTAAAATTTAGAAGCTTCTGAAAAATACCTTTTTCAAGAATCGCTCACGATGAAGAATGGCGATGCCGTTGAGGACGAGCAGCGCGGCTTCGAGAAGAGCGTAGAAGGAAAGGGCCATCTGGAAATATCACTGAATCTGGAATTAGAGGAAAAAAGCGTAGGATTCGAAGATAAGTATCGTATAAGAAGGGAGTAAATTTTGAATTTTCCCGGATTTTTTTCCAAATTTCCAATTTTTTTTTGTTCAATGAAGTTATTTTTCTGCTTTTTAACAAACAAATACGACTCTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCTCCAAAAATGAGAAG</pcr_primer_p1>
		<pcr_primer_p2>CAGTACCGTTAAGGATCAACTC</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCTCCAAAAATGAGAAGGAGTTTTAGCTTGCAAAGCGGAATATTCTGCGAAGAAAATGCGGTGAAAAATCGGAATTTTCGCTGATTTTTGGGAATTTTTGAATAGAATTTTTATGATTTTAACTCATATTTTCCACAATTTCCCTCTCAATTCATCTAATTCTCGGCATACTTCGCATCACAGTTTGCACGGCGAAAATGAGCGAAACGAGTTGATCCTTAACGGTACTG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCTCCAAAAATGAGAAGGAGTTTTAGCTTGCAAAGCGGAATATTCTGCGAAGAAAATGCGGTGAAAAATCGGAATTTWCGCTGATTTTTGGGAATTTTTGAATAGAATTTTTATGATTTTAACTCATATTTTCCACAATTTCCCTCTCAATTCATCTAATTCTCGGCATACTTCGCATCACAGTTTGCACGGCGAAAATGAGCGAAACGAGTTGATCCTTAACGGTACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36212</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>136490</contig_pos>
        <strand>+</strand>
        <context>TCGGAATTTW[A/T]GCTGATTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGCAAAGCGGAATATTCTGCGAAGAAAATGCGGTGAAAAATCGGAATTTT</left_flank>
        <right_flank>GCTGATTTTTGGGAATTTTTGAATAGAATTTTTATGATTTTAACTCATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAAACACGTAGAATTCAGGTCGATATAGCATAGAAAATTGAAACAGAAAAATATTAGAATTATGAAGAATCCGTTGTTGAAGAAGGTTAACCCAGCACCAGCTTGAACACAATCACCACGATGTTGATGGCGATGAGTGGCACTGAAAAAATATAAAACAATTATTAAGAAGAAGAGGATTTTAAAGAAAAAACTGAGAAAAAGGTGGAGAATTCTAATTTTCTAGGATGAAATAGCTTAAATTTTGCTCGTTTTCTACTGAGAACACTAACGATACGTGTGTTTAACGGAAGAACGCATAGAATCGATAGGAACACGAGGTGTTGCGGTAGAGCGCAAACGCGAGGGGGGACGCGAACGGGAGGAGAGGAAAATAGACGATTTCCGGGGGAAAATAGAAGGAAAAATGCCAGAAAAAATCTCCAAAAATGAGAAGGAGTTTTAGCTTGCAAAGCGGAATATTCTGCGAAGAAAATGCGGTGAAAAATCGGAATTTTCGCTGATTTTTGGGAATTTTTGAATAGAATTTTTATGATTTTAACTCATATTTTCCACAATTTCCCTCTCAATTCATCTAATTCTCGGCATACTTCGCATCACAGTTTGCACGGCGAAAATGAGCGAAACGAGTTGATCCTTAACGGTACTGGAGCCATCGAACGAGTGGGAAGGAGCGCCGAGACCGTACTGAAAAATCGATATTCTAAAATTTAGAAGCTTCTGAAAAATACCTTTTTCAAGAATCGCTCACGATGAAGAATGGCGATGCCGTTGAGGACGAGCAGCGCGGCTTCGAGAAGAGCGTAGAAGGAAAGGGCCATCTGGAAATATCACTGAATCTGGAATTAGAGGAAAAAAGCGTAGGATTCGAAGATAAGTATCGTATAAGAAGGGAGTAAATTTTGAATTTTCCCGGATTTTTTTCCAAATTTCCAATTTTTTTTTGTTCAATGAAGTTATTTTTCTGCTTTTTAACAAACAAATACGACTCTGAAAAT</canonical>
            <polymorphic>GAGAAACACGTAGAATTCAGGTCGATATAGCATAGAAAATTGAAACAGAAAAATATTAGAATTATGAAGAATCCGTTGTTGAAGAAGGTTAACCCAGCACCAGCTTGAACACAATCACCACGATGTTGATGGCGATGAGTGGCACTGAAAAAATATAAAACAATTATTAAGAAGAAGAGGATTTTAAAGAAAAAACTGAGAAAAAGGTGGAGAATTCTAATTTTCTAGGATGAAATAGCTTAAATTTTGCTCGTTTTCTACTGAGAACACTAACGATACGTGTGTTTAACGGAAGAACGCATAGAATCGATAGGAACACGAGGTGTTGCGGTAGAGCGCAAACGCGAGGGGGGACGCGAACGGGAGGAGAGGAAAATAGACGATTTCCGGGGGAAAATAGAAGGAAAAATGCCAGAAAAAATCTCCAAAAATGAGAAGGAGTTTTAGCTTGCAAAGCGGAATATTCTGCGAAGAAAATGCGGTGAAAAATCGGAATTTTWGCTGATTTTTGGGAATTTTTGAATAGAATTTTTATGATTTTAACTCATATTTTCCACAATTTCCCTCTCAATTCATCTAATTCTCGGCATACTTCGCATCACAGTTTGCACGGCGAAAATGAGCGAAACGAGTTGATCCTTAACGGTACTGGAGCCATCGAACGAGTGGGAAGGAGCGCCGAGACCGTACTGAAAAATCGATATTCTAAAATTTAGAAGCTTCTGAAAAATACCTTTTTCAAGAATCGCTCACGATGAAGAATGGCGATGCCGTTGAGGACGAGCAGCGCGGCTTCGAGAAGAGCGTAGAAGGAAAGGGCCATCTGGAAATATCACTGAATCTGGAATTAGAGGAAAAAAGCGTAGGATTCGAAGATAAGTATCGTATAAGAAGGGAGTAAATTTTGAATTTTCCCGGATTTTTTTCCAAATTTCCAATTTTTTTTTGTTCAATGAAGTTATTTTTCTGCTTTTTAACAAACAAATACGACTCTGAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCTCCAAAAATGAGAAG</pcr_primer_p1>
		<pcr_primer_p2>CAGTACCGTTAAGGATCAACTC</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCTCCAAAAATGAGAAGGAGTTTTAGCTTGCAAAGCGGAATATTCTGCGAAGAAAATGCGGTGAAAAATCGGAATTTTCGCTGATTTTTGGGAATTTTTGAATAGAATTTTTATGATTTTAACTCATATTTTCCACAATTTCCCTCTCAATTCATCTAATTCTCGGCATACTTCGCATCACAGTTTGCACGGCGAAAATGAGCGAAACGAGTTGATCCTTAACGGTACTG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCTCCAAAAATGAGAAGGAGTTTTAGCTTGCAAAGCGGAATATTCTGCGAAGAAAATGCGGTGAAAAATCGGAATTTTWGCTGATTTTTGGGAATTTTTGAATAGAATTTTTATGATTTTAACTCATATTTTCCACAATTTCCCTCTCAATTCATCTAATTCTCGGCATACTTCGCATCACAGTTTGCACGGCGAAAATGAGCGAAACGAGTTGATCCTTAACGGTACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36213</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>136574</contig_pos>
        <strand>+</strand>
        <context>CATCTAATTC[G/T]CGGCATACTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGATTTTAACTCATATTTTCCACAATTTCCCTCTCAATTCATCTAATTC</left_flank>
        <right_flank>CGGCATACTTCGCATCACAGTTTGCACGGCGAAAATGAGCGAAACGAGTT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGTTAACCCAGCACCAGCTTGAACACAATCACCACGATGTTGATGGCGATGAGTGGCACTGAAAAAATATAAAACAATTATTAAGAAGAAGAGGATTTTAAAGAAAAAACTGAGAAAAAGGTGGAGAATTCTAATTTTCTAGGATGAAATAGCTTAAATTTTGCTCGTTTTCTACTGAGAACACTAACGATACGTGTGTTTAACGGAAGAACGCATAGAATCGATAGGAACACGAGGTGTTGCGGTAGAGCGCAAACGCGAGGGGGGACGCGAACGGGAGGAGAGGAAAATAGACGATTTCCGGGGGAAAATAGAAGGAAAAATGCCAGAAAAAATCTCCAAAAATGAGAAGGAGTTTTAGCTTGCAAAGCGGAATATTCTGCGAAGAAAATGCGGTGAAAAATCGGAATTTTCGCTGATTTTTGGGAATTTTTGAATAGAATTTTTATGATTTTAACTCATATTTTCCACAATTTCCCTCTCAATTCATCTAATTCTCGGCATACTTCGCATCACAGTTTGCACGGCGAAAATGAGCGAAACGAGTTGATCCTTAACGGTACTGGAGCCATCGAACGAGTGGGAAGGAGCGCCGAGACCGTACTGAAAAATCGATATTCTAAAATTTAGAAGCTTCTGAAAAATACCTTTTTCAAGAATCGCTCACGATGAAGAATGGCGATGCCGTTGAGGACGAGCAGCGCGGCTTCGAGAAGAGCGTAGAAGGAAAGGGCCATCTGGAAATATCACTGAATCTGGAATTAGAGGAAAAAAGCGTAGGATTCGAAGATAAGTATCGTATAAGAAGGGAGTAAATTTTGAATTTTCCCGGATTTTTTTCCAAATTTCCAATTTTTTTTTGTTCAATGAAGTTATTTTTCTGCTTTTTAACAAACAAATACGACTCTGAAAATCACAAATCACGAATTTTCAACTGTTTTTGCTTTACAAAAAGTTTCAAAATTTAAGAAAATAGTTTAAAATTACAACAATATTTA</canonical>
            <polymorphic>AAGGTTAACCCAGCACCAGCTTGAACACAATCACCACGATGTTGATGGCGATGAGTGGCACTGAAAAAATATAAAACAATTATTAAGAAGAAGAGGATTTTAAAGAAAAAACTGAGAAAAAGGTGGAGAATTCTAATTTTCTAGGATGAAATAGCTTAAATTTTGCTCGTTTTCTACTGAGAACACTAACGATACGTGTGTTTAACGGAAGAACGCATAGAATCGATAGGAACACGAGGTGTTGCGGTAGAGCGCAAACGCGAGGGGGGACGCGAACGGGAGGAGAGGAAAATAGACGATTTCCGGGGGAAAATAGAAGGAAAAATGCCAGAAAAAATCTCCAAAAATGAGAAGGAGTTTTAGCTTGCAAAGCGGAATATTCTGCGAAGAAAATGCGGTGAAAAATCGGAATTTTCGCTGATTTTTGGGAATTTTTGAATAGAATTTTTATGATTTTAACTCATATTTTCCACAATTTCCCTCTCAATTCATCTAATTCKCGGCATACTTCGCATCACAGTTTGCACGGCGAAAATGAGCGAAACGAGTTGATCCTTAACGGTACTGGAGCCATCGAACGAGTGGGAAGGAGCGCCGAGACCGTACTGAAAAATCGATATTCTAAAATTTAGAAGCTTCTGAAAAATACCTTTTTCAAGAATCGCTCACGATGAAGAATGGCGATGCCGTTGAGGACGAGCAGCGCGGCTTCGAGAAGAGCGTAGAAGGAAAGGGCCATCTGGAAATATCACTGAATCTGGAATTAGAGGAAAAAAGCGTAGGATTCGAAGATAAGTATCGTATAAGAAGGGAGTAAATTTTGAATTTTCCCGGATTTTTTTCCAAATTTCCAATTTTTTTTTGTTCAATGAAGTTATTTTTCTGCTTTTTAACAAACAAATACGACTCTGAAAATCACAAATCACGAATTTTCAACTGTTTTTGCTTTACAAAAAGTTTCAAAATTTAAGAAAATAGTTTAAAATTACAACAATATTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTTGGGAATTTTTGAATAG</pcr_primer_p1>
		<pcr_primer_p2>GCGATTCTTGAAAAAGGTATT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GATTTTTGGGAATTTTTGAATAGAATTTTTATGATTTTAACTCATATTTTCCACAATTTCCCTCTCAATTCATCTAATTCTCGGCATACTTCGCATCACAGTTTGCACGGCGAAAATGAGCGAAACGAGTTGATCCTTAACGGTACTGGAGCCATCGAACGAGTGGGAAGGAGCGCCGAGACCGTACTGAAAAATCGATATTCTAAAATTTAGAAGCTTCTGAAAAATACCTTTTTCAAGAATCGC</canonical_amplicon>
		<polymorphic_amplicon>GATTTTTGGGAATTTTTGAATAGAATTTTTATGATTTTAACTCATATTTTCCACAATTTCCCTCTCAATTCATCTAATTCKCGGCATACTTCGCATCACAGTTTGCACGGCGAAAATGAGCGAAACGAGTTGATCCTTAACGGTACTGGAGCCATCGAACGAGTGGGAAGGAGCGCCGAGACCGTACTGAAAAATCGATATTCTAAAATTTAGAAGCTTCTGAAAAATACCTTTTTCAAGAATCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36214</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140110</contig_pos>
        <strand>+</strand>
        <context>TCCAGGGTGT[C/T]CAGCCAGAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGT</left_flank>
        <right_flank>CAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTAGCGGAATCAGTGCCACTCCAATCGAAGCTGTATTCATGCTCAACAAAGTGGACCAACAGCTGGAGTACGGGAATATTCTGGGTTGCCCAAAAAGATTCCTGAGATCCGTTCAGCCAGAAGATTCGGATGCTGTCATTCAGAGATTCCTGACCTCTATGAAGCCAATCCTGGCCTCTCATGATCCAGCTCAGATTGATAAGCTCTTCGACGACGCCTTCCTCTTCAAGGGATGCCATGGAACCTACACGAAAGGTGCACTTTCAGAGCCTCCCACAAAATACATAATAATCATTTTCAGCCCAAGCCGTCGCCAAAATCGCCTCGCTTCCAGCCGGAGCCTCTTTCGATTTCTCGCTGATCAACTCGAAATGGAATAACCTCGGACAAATCGAGTACACTGTCTATGTGTCCGTTCCACGGATGGATAGAATCCAAGCACAATTCGTCTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAAC</canonical>
            <polymorphic>GTTAGCGGAATCAGTGCCACTCCAATCGAAGCTGTATTCATGCTCAACAAAGTGGACCAACAGCTGGAGTACGGGAATATTCTGGGTTGCCCAAAAAGATTCCTGAGATCCGTTCAGCCAGAAGATTCGGATGCTGTCATTCAGAGATTCCTGACCTCTATGAAGCCAATCCTGGCCTCTCATGATCCAGCTCAGATTGATAAGCTCTTCGACGACGCCTTCCTCTTCAAGGGATGCCATGGAACCTACACGAAAGGTGCACTTTCAGAGCCTCCCACAAAATACATAATAATCATTTTCAGCCCAAGCCGTCGCCAAAATCGCCTCGCTTCCAGCCGGAGCCTCTTTCGATTTCTCGCTGATCAACTCGAAATGGAATAACCTCGGACAAATCGAGTACACTGTCTATGTGTCCGTTCCACGGATGGATAGAATCCAAGCACAATTCGTCTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTYCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCAACTCGAAATGGAATAAC</pcr_primer_p1>
		<pcr_primer_p2>TACTTCTCCGTTTTATGCAATAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GATCAACTCGAAATGGAATAACCTCGGACAAATCGAGTACACTGTCTATGTGTCCGTTCCACGGATGGATAGAATCCAAGCACAATTCGTCTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTA</canonical_amplicon>
		<polymorphic_amplicon>GATCAACTCGAAATGGAATAACCTCGGACAAATCGAGTACACTGTCTATGTGTCCGTTCCACGGATGGATAGAATCCAAGCACAATTCGTCTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTYCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36215</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140134</contig_pos>
        <strand>+</strand>
        <context>CTACTGAGTG[A/G]ATTGATCTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTG</left_flank>
        <right_flank>ATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGAAGCTGTATTCATGCTCAACAAAGTGGACCAACAGCTGGAGTACGGGAATATTCTGGGTTGCCCAAAAAGATTCCTGAGATCCGTTCAGCCAGAAGATTCGGATGCTGTCATTCAGAGATTCCTGACCTCTATGAAGCCAATCCTGGCCTCTCATGATCCAGCTCAGATTGATAAGCTCTTCGACGACGCCTTCCTCTTCAAGGGATGCCATGGAACCTACACGAAAGGTGCACTTTCAGAGCCTCCCACAAAATACATAATAATCATTTTCAGCCCAAGCCGTCGCCAAAATCGCCTCGCTTCCAGCCGGAGCCTCTTTCGATTTCTCGCTGATCAACTCGAAATGGAATAACCTCGGACAAATCGAGTACACTGTCTATGTGTCCGTTCCACGGATGGATAGAATCCAAGCACAATTCGTCTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTT</canonical>
            <polymorphic>ATCGAAGCTGTATTCATGCTCAACAAAGTGGACCAACAGCTGGAGTACGGGAATATTCTGGGTTGCCCAAAAAGATTCCTGAGATCCGTTCAGCCAGAAGATTCGGATGCTGTCATTCAGAGATTCCTGACCTCTATGAAGCCAATCCTGGCCTCTCATGATCCAGCTCAGATTGATAAGCTCTTCGACGACGCCTTCCTCTTCAAGGGATGCCATGGAACCTACACGAAAGGTGCACTTTCAGAGCCTCCCACAAAATACATAATAATCATTTTCAGCCCAAGCCGTCGCCAAAATCGCCTCGCTTCCAGCCGGAGCCTCTTTCGATTTCTCGCTGATCAACTCGAAATGGAATAACCTCGGACAAATCGAGTACACTGTCTATGTGTCCGTTCCACGGATGGATAGAATCCAAGCACAATTCGTCTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGRATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>419 288 119 80 51 43</canonical_bands>
                <polymorphic_bands>419 288 131 119 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCAACTCGAAATGGAATAAC</pcr_primer_p1>
		<pcr_primer_p2>TACTTCTCCGTTTTATGCAATAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GATCAACTCGAAATGGAATAACCTCGGACAAATCGAGTACACTGTCTATGTGTCCGTTCCACGGATGGATAGAATCCAAGCACAATTCGTCTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTA</canonical_amplicon>
		<polymorphic_amplicon>GATCAACTCGAAATGGAATAACCTCGGACAAATCGAGTACACTGTCTATGTGTCCGTTCCACGGATGGATAGAATCCAAGCACAATTCGTCTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGRATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36216</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140298</contig_pos>
        <strand>+</strand>
        <context>CTGAACCAGC[A/G]GACCGAATTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGC</left_flank>
        <right_flank>GACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTCAGATTGATAAGCTCTTCGACGACGCCTTCCTCTTCAAGGGATGCCATGGAACCTACACGAAAGGTGCACTTTCAGAGCCTCCCACAAAATACATAATAATCATTTTCAGCCCAAGCCGTCGCCAAAATCGCCTCGCTTCCAGCCGGAGCCTCTTTCGATTTCTCGCTGATCAACTCGAAATGGAATAACCTCGGACAAATCGAGTACACTGTCTATGTGTCCGTTCCACGGATGGATAGAATCCAAGCACAATTCGTCTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTAC</canonical>
            <polymorphic>AGCTCAGATTGATAAGCTCTTCGACGACGCCTTCCTCTTCAAGGGATGCCATGGAACCTACACGAAAGGTGCACTTTCAGAGCCTCCCACAAAATACATAATAATCATTTTCAGCCCAAGCCGTCGCCAAAATCGCCTCGCTTCCAGCCGGAGCCTCTTTCGATTTCTCGCTGATCAACTCGAAATGGAATAACCTCGGACAAATCGAGTACACTGTCTATGTGTCCGTTCCACGGATGGATAGAATCCAAGCACAATTCGTCTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCRGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CGGWCCG</site>
                <isoschizomers>
                    <enzyme>CpoI</enzyme>
                    <enzyme>CspI</enzyme>
                    <enzyme>Rsr2I</enzyme>
                    <enzyme>RsrII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGATCTTGAGACCTCTTTTGT</pcr_primer_p1>
		<pcr_primer_p2>GTAATCCATTGAAACATTTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTAC</canonical_amplicon>
		<polymorphic_amplicon>ATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCRGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36217</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140332</contig_pos>
        <strand>+</strand>
        <context>ACCAAATGAG[A/T]ACTGTAGCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAG</left_flank>
        <right_flank>ACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTTCAAGGGATGCCATGGAACCTACACGAAAGGTGCACTTTCAGAGCCTCCCACAAAATACATAATAATCATTTTCAGCCCAAGCCGTCGCCAAAATCGCCTCGCTTCCAGCCGGAGCCTCTTTCGATTTCTCGCTGATCAACTCGAAATGGAATAACCTCGGACAAATCGAGTACACTGTCTATGTGTCCGTTCCACGGATGGATAGAATCCAAGCACAATTCGTCTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTA</canonical>
            <polymorphic>CTCTTCAAGGGATGCCATGGAACCTACACGAAAGGTGCACTTTCAGAGCCTCCCACAAAATACATAATAATCATTTTCAGCCCAAGCCGTCGCCAAAATCGCCTCGCTTCCAGCCGGAGCCTCTTTCGATTTCTCGCTGATCAACTCGAAATGGAATAACCTCGGACAAATCGAGTACACTGTCTATGTGTCCGTTCCACGGATGGATAGAATCCAAGCACAATTCGTCTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGWACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGTACT</site>
                <isoschizomers>
                    <enzyme>Acc113I</enzyme>
                    <enzyme>ScaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 324 176</canonical_bands>
                <polymorphic_bands>824 176</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>502 324 174</canonical_bands>
                <polymorphic_bands>826 174</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAACTCCAGGGATCTAGAATA</pcr_primer_p1>
		<pcr_primer_p2>CGTTCTGATGAAACAACTACAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACG</canonical_amplicon>
		<polymorphic_amplicon>GAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGWACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36218</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140390</contig_pos>
        <strand>+</strand>
        <context>TACTGTAGTT[C/T]TTCATTCGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTT</left_flank>
        <right_flank>TTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATACATAATAATCATTTTCAGCCCAAGCCGTCGCCAAAATCGCCTCGCTTCCAGCCGGAGCCTCTTTCGATTTCTCGCTGATCAACTCGAAATGGAATAACCTCGGACAAATCGAGTACACTGTCTATGTGTCCGTTCCACGGATGGATAGAATCCAAGCACAATTCGTCTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATT</canonical>
            <polymorphic>AATACATAATAATCATTTTCAGCCCAAGCCGTCGCCAAAATCGCCTCGCTTCCAGCCGGAGCCTCTTTCGATTTCTCGCTGATCAACTCGAAATGGAATAACCTCGGACAAATCGAGTACACTGTCTATGTGTCCGTTCCACGGATGGATAGAATCCAAGCACAATTCGTCTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTYTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAACTCCAGGGATCTAGAATA</pcr_primer_p1>
		<pcr_primer_p2>CGTTCTGATGAAACAACTACAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACG</canonical_amplicon>
		<polymorphic_amplicon>GAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTYTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36219</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140442</contig_pos>
        <strand>+</strand>
        <context>AGAAGGTTTC[A/C]AYGGATTACT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTC</left_flank>
        <right_flank>ATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGCCGGAGCCTCTTTCGATTTCTCGCTGATCAACTCGAAATGGAATAACCTCGGACAAATCGAGTACACTGTCTATGTGTCCGTTCCACGGATGGATAGAATCCAAGCACAATTCGTCTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTA</canonical>
            <polymorphic>CAGCCGGAGCCTCTTTCGATTTCTCGCTGATCAACTCGAAATGGAATAACCTCGGACAAATCGAGTACACTGTCTATGTGTCCGTTCCACGGATGGATAGAATCCAAGCACAATTCGTCTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCMATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>211 154 139 129 104 104 72 50 37</canonical_bands>
                <polymorphic_bands>315 154 139 129 104 72 50 37</polymorphic_bands>
            </assay>
            <assay>
                <site>CCATGG</site>
                <isoschizomers>
                    <enzyme>Bsp19I</enzyme>
                    <enzyme>NcoI</enzyme>
                </isoschizomers>
                <canonical_bands>499 154 139 104 104</canonical_bands>
                <polymorphic_bands>603 154 139 104</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>499 154 139 104 104</canonical_bands>
                <polymorphic_bands>603 154 139 104</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>412 154 139 104 104 87</canonical_bands>
                <polymorphic_bands>516 154 139 104 87</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>218 191 153 139 104 104 91</canonical_bands>
                <polymorphic_bands>218 195 191 153 139 104</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAAATGTTTCAATGGATTACT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTCGAATGAAAAACTACAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTT</canonical_amplicon>
		<polymorphic_amplicon>TCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCMATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36220</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140444</contig_pos>
        <strand>+</strand>
        <context>AAGGTTTCMA[C/T]GGATTACTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCA</left_flank>
        <right_flank>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCGGAGCCTCTTTCGATTTCTCGCTGATCAACTCGAAATGGAATAACCTCGGACAAATCGAGTACACTGTCTATGTGTCCGTTCCACGGATGGATAGAATCCAAGCACAATTCGTCTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGT</canonical>
            <polymorphic>GCCGGAGCCTCTTTCGATTTCTCGCTGATCAACTCGAAATGGAATAACCTCGGACAAATCGAGTACACTGTCTATGTGTCCGTTCCACGGATGGATAGAATCCAAGCACAATTCGTCTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCAYGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCATGG</site>
                <isoschizomers>
                    <enzyme>Bsp19I</enzyme>
                    <enzyme>NcoI</enzyme>
                </isoschizomers>
                <canonical_bands>497 156 139 104 104</canonical_bands>
                <polymorphic_bands>601 156 139 104</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>497 156 139 104 104</canonical_bands>
                <polymorphic_bands>601 156 139 104</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>412 156 139 104 104 85</canonical_bands>
                <polymorphic_bands>516 156 139 104 85</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>216 191 155 139 104 104 91</canonical_bands>
                <polymorphic_bands>216 195 191 155 139 104</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAAATGTTTCAATGGATTACT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTCGAATGAAAAACTACAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTT</canonical_amplicon>
		<polymorphic_amplicon>TCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCAYGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36221</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140506</contig_pos>
        <strand></strand>
        <context>TCATTCGAAA[C/A]TTTCAATGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAA</left_flank>
        <right_flank>TTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACACTGTCTATGTGTCCGTTCCACGGATGGATAGAATCCAAGCACAATTCGTCTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTC</canonical>
            <polymorphic>GTACACTGTCTATGTGTCCGTTCCACGGATGGATAGAATCCAAGCACAATTCGTCTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAAMTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAATGTTTCAATGGATTACT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTCGAATGAAAAACTACAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAAMTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTT</canonical_amplicon>
		<polymorphic_amplicon>TCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAAMTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36222</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140528</contig_pos>
        <strand></strand>
        <context>TACTGTAGTT[G/T]TTTCATYAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTT</left_flank>
        <right_flank>TTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACGGATGGATAGAATCCAAGCACAATTCGTCTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACC</canonical>
            <polymorphic>CCACGGATGGATAGAATCCAAGCACAATTCGTCTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTKTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAATGTTTCAATGGATTACT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTCGAATGAAAAACTACAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTKTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTT</canonical_amplicon>
		<polymorphic_amplicon>TCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTKTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36223</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140535</contig_pos>
        <strand></strand>
        <context>GTTKTTTCAT[T/C]AGAARGTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCAT</left_flank>
        <right_flank>AGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGG</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGATAGAATCCAAGCACAATTCGTCTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGC</canonical>
            <polymorphic>TGGATAGAATCCAAGCACAATTCGTCTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATYAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAATGTTTCAATGGATTACT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTCGAATGAAAAACTACAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATYAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTT</canonical_amplicon>
		<polymorphic_amplicon>TCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATYAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36224</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140540</contig_pos>
        <strand></strand>
        <context>TTCATYAGAA[G/A]GTTTCCAYGR</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAA</left_flank>
        <right_flank>GTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTAC</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATCCAAGCACAATTCGTCTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCT</canonical>
            <polymorphic>AGAATCCAAGCACAATTCGTCTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAARGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAATGTTTCAATGGATTACT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTCGAATGAAAAACTACAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAARGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTT</canonical_amplicon>
		<polymorphic_amplicon>TCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAARGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36225</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140548</contig_pos>
        <strand></strand>
        <context>AARGTTTCCA[T/C]GRATTACTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCA</left_flank>
        <right_flank>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCACAATTCGTCTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTC</canonical>
            <polymorphic>AGCACAATTCGTCTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCAYGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCATGG</site>
                <isoschizomers>
                    <enzyme>Bsp19I</enzyme>
                    <enzyme>NcoI</enzyme>
                </isoschizomers>
                <canonical_bands>393 260 139 104 104</canonical_bands>
                <polymorphic_bands>497 260 139 104</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>393 260 139 104 104</canonical_bands>
                <polymorphic_bands>497 260 139 104</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>393 260 139 104 104</canonical_bands>
                <polymorphic_bands>497 260 139 104</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>259 191 139 112 104 104 91</canonical_bands>
                <polymorphic_bands>259 195 191 139 112 104</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAAATGTTTCAATGGATTACT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTCGAATGAAAAACTACAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCAYGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTT</canonical_amplicon>
		<polymorphic_amplicon>TCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCAYGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36226</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140550</contig_pos>
        <strand></strand>
        <context>RGTTTCCAYG[G/A]ATTACTGTAK</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATG</left_flank>
        <right_flank>ATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACAATTCGTCTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTT</canonical>
            <polymorphic>CACAATTCGTCTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGRATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>262 211 139 129 104 104 51</canonical_bands>
                <polymorphic_bands>315 262 139 129 104 51</polymorphic_bands>
            </assay>
            <assay>
                <site>CCATGG</site>
                <isoschizomers>
                    <enzyme>Bsp19I</enzyme>
                    <enzyme>NcoI</enzyme>
                </isoschizomers>
                <canonical_bands>391 262 139 104 104</canonical_bands>
                <polymorphic_bands>495 262 139 104</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>391 262 139 104 104</canonical_bands>
                <polymorphic_bands>495 262 139 104</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>391 262 139 104 104</canonical_bands>
                <polymorphic_bands>495 262 139 104</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAAATGTTTCAATGGATTACT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTCGAATGAAAAACTACAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGRATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTT</canonical_amplicon>
		<polymorphic_amplicon>TCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGRATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36227</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140560</contig_pos>
        <strand></strand>
        <context>RATTACTGTA[G/T]TTKTTTCATC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTA</left_flank>
        <right_flank>TTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAAC</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCAT</canonical>
            <polymorphic>CTACTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAKTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>274 122 70 48 36 35 35 35 35 35 35 35 35 34 34 34 34 34</canonical_bands>
                <polymorphic_bands>274 122 70 70 48 36 35 35 35 35 35 35 34 34 34 34 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAATGGATTACTGTAGTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>CATGGAAACCTTCTAATGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAKTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATG</canonical_amplicon>
		<polymorphic_amplicon>TTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAKTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36228</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140563</contig_pos>
        <strand></strand>
        <context>TACTGTAKTT[G/T]TTTCATCAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTT</left_flank>
        <right_flank>TTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGC</canonical>
            <polymorphic>CTGTCCACAGAGAAACATTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTKTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAATGGATTACTGTAGTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>CATGGAAACCTTCTAATGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTKTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATG</canonical_amplicon>
		<polymorphic_amplicon>TTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTKTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36229</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140580</contig_pos>
        <strand></strand>
        <context>CAGAACGTTT[C/T]AATGGATTAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTT</left_flank>
        <right_flank>AATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTAT</canonical>
            <polymorphic>TTCTCAAGTCTGGAAGTGTTCCAGGGTGTCCAGCCAGAAGATTCTACTGAGTGAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTYAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAATGGATTACTGTAGTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>CATGGAAACCTTCTAATGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTYAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATG</canonical_amplicon>
		<polymorphic_amplicon>TTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTYAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36230</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140632</contig_pos>
        <strand>+</strand>
        <context>TACTGTAGTT[A/G]TTTCATTAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTT</left_flank>
        <right_flank>TTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTT</canonical>
            <polymorphic>GAATTGATCTTGAGACCTCTTTTGTGTCATGAATAAAGATTATTAGCATCAAAATTTTTTGTTGAAGTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTRTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACGTTTCAATGGATTACTGTAG</pcr_primer_p1>
		<pcr_primer_p2>GAAACGTTCTGATGAAACAAC</pcr_primer_p2>
		<pcr_amplicon_size>216</pcr_amplicon_size>
		<canonical_amplicon>AACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTC</canonical_amplicon>
		<polymorphic_amplicon>AACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36231</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140698</contig_pos>
        <strand>+</strand>
        <context>ggattactgt[A/G]gttmtttcrt</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGT</left_flank>
        <right_flank>GTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGA</canonical>
            <polymorphic>GTATTGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTRGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>387 267 113 90 82 48 10 3</canonical_bands>
                <polymorphic_bands>654 113 90 82 48 10 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCCATGGATTACTGTAGTTGT</pcr_primer_p1>
		<pcr_primer_p2>GAGACGGTTTTTAAGGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>354</pcr_amplicon_size>
		<canonical_amplicon>TTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</canonical_amplicon>
		<polymorphic_amplicon>TTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTRGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36232</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140702</contig_pos>
        <strand>+</strand>
        <context>tactgtrgtt[A/C/G]tttcrttaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C/G</alleles>
        <left_flank>TGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTT</left_flank>
        <right_flank>TTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTT</canonical>
            <polymorphic>TGCATAAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTMTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATGGATTACTGTAGTTGTTTC</pcr_primer_p1>
		<pcr_primer_p2>GAGACGGTTTTTAAGGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>351</pcr_amplicon_size>
		<canonical_amplicon>CCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</canonical_amplicon>
		<polymorphic_amplicon>CCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTMTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36233</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140707</contig_pos>
        <strand></strand>
        <context>trgttmtttc[G/A]ttaaaaaatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTC</left_flank>
        <right_flank>TTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATA</canonical>
            <polymorphic>AAAACGGAGAAGTATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCRTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTACTGTAGTTGTTTCATCAG</pcr_primer_p1>
		<pcr_primer_p2>GAGACGGTTTTTAAGGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</canonical_amplicon>
		<polymorphic_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCRTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36234</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140720</contig_pos>
        <strand></strand>
        <context>aaaaaatttc[A/C]atggattact</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTC</left_flank>
        <right_flank>ATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATT</canonical>
            <polymorphic>ATGAGAACTCCAGGGATCTAGAATACGGATTGTATCTCAGTAGGTCGCAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCMATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTACTGTAGTTGTTTCATCAG</pcr_primer_p1>
		<pcr_primer_p2>GAGACGGTTTTTAAGGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</canonical_amplicon>
		<polymorphic_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCMATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36235</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140767</contig_pos>
        <strand></strand>
        <context>ggattactgt[A/G]gttktttcrt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGT</left_flank>
        <right_flank>GTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTC</canonical>
            <polymorphic>CAGAACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTRGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>329 70 67 48 36 35 35 35 35 35 35 35 35 34 34 34 34 34</canonical_bands>
                <polymorphic_bands>329 70 69 67 48 36 35 35 35 35 35 35 35 34 34 34 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTACTGTAGTTGTTTCATCAG</pcr_primer_p1>
		<pcr_primer_p2>GAGACGGTTTTTAAGGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</canonical_amplicon>
		<polymorphic_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36236</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140771</contig_pos>
        <strand>+</strand>
        <context>tactgtrgtt[G/T/C]tttcrttaga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T/C</alleles>
        <left_flank>ATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTT</left_flank>
        <right_flank>TTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTG</canonical>
            <polymorphic>ACCTGTCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTKTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTACTGTAGTTGTTTCATCAG</pcr_primer_p1>
		<pcr_primer_p2>GAGACGGTTTTTAAGGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</canonical_amplicon>
		<polymorphic_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36237</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140776</contig_pos>
        <strand></strand>
        <context>trgttktttc[A/G]ttagaaggtt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTC</left_flank>
        <right_flank>TTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCT</canonical>
            <polymorphic>TCGACCGCCGACTGAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCRTTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTACTGTAGTTGTTTCATCAG</pcr_primer_p1>
		<pcr_primer_p2>GAGACGGTTTTTAAGGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</canonical_amplicon>
		<polymorphic_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36238</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140789</contig_pos>
        <strand></strand>
        <context>agaaggtttc[C/A]atggattact</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTC</left_flank>
        <right_flank>ATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAA</canonical>
            <polymorphic>GAACCAGCGGACCGAATTCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCMATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>501 152 139 104 104</canonical_bands>
                <polymorphic_bands>501 256 139 104</polymorphic_bands>
            </assay>
            <assay>
                <site>CCATGG</site>
                <isoschizomers>
                    <enzyme>Bsp19I</enzyme>
                    <enzyme>NcoI</enzyme>
                </isoschizomers>
                <canonical_bands>501 152 139 104 104</canonical_bands>
                <polymorphic_bands>501 256 139 104</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>501 152 139 104 104</canonical_bands>
                <polymorphic_bands>501 256 139 104</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 152 139 104 104</canonical_bands>
                <polymorphic_bands>501 256 139 104</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 139 104 104 91 62</canonical_bands>
                <polymorphic_bands>500 195 139 104 62</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTACTGTAGTTGTTTCATCAG</pcr_primer_p1>
		<pcr_primer_p2>GAGACGGTTTTTAAGGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</canonical_amplicon>
		<polymorphic_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36239</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140806</contig_pos>
        <strand></strand>
        <context>tactgtagtt[G/T]tttcatcaga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTT</left_flank>
        <right_flank>TTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAATTCGATTTTCTTCTTCT</canonical>
            <polymorphic>TCGTGCTTTTAAACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTKTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAATTCGATTTTCTTCTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTACTGTAGTTGTTTCATCAG</pcr_primer_p1>
		<pcr_primer_p2>GAGACGGTTTTTAAGGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</canonical_amplicon>
		<polymorphic_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36240</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140818</contig_pos>
        <strand></strand>
        <context>ttcatcagaa[C/A]gtttcaaygr</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAA</left_flank>
        <right_flank>GTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTAC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAATTCGATTTTCTTCTTCTATTTTCATCTTC</canonical>
            <polymorphic>ACAACCAAATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAAMGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAATTCGATTTTCTTCTTCTATTTTCATCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>396 152 139 105 104 104</canonical_bands>
                <polymorphic_bands>396 256 139 105 104</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>396 152 139 105 104 104</canonical_bands>
                <polymorphic_bands>396 256 139 105 104</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTACTGTAGTTGTTTCATCAG</pcr_primer_p1>
		<pcr_primer_p2>GAGACGGTTTTTAAGGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>GGATTACTGTAGTTGTTTCATCAGAAMGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</canonical_amplicon>
		<polymorphic_amplicon>GGATTACTGTAGTTGTTTCATCAGAAMGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36241</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140826</contig_pos>
        <strand></strand>
        <context>aamgtttcaa[T/C]grattactgt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAA</left_flank>
        <right_flank>GGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAATTCGATTTTCTTCTTCTATTTTCATCTTCCCTGAATT</canonical>
            <polymorphic>ATGAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAAYGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAATTCGATTTTCTTCTTCTATTTTCATCTTCCCTGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTACTGTAGTTGTTTCATCAG</pcr_primer_p1>
		<pcr_primer_p2>GAGACGGTTTTTAAGGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAAYGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</canonical_amplicon>
		<polymorphic_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAAYGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36242</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140828</contig_pos>
        <strand>+</strand>
        <context>mgtttcaayg[A/G]attactgtak</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATG</left_flank>
        <right_flank>ATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAATTCGATTTTCTTCTTCTATTTTCATCTTCCCTGAATTGT</canonical>
            <polymorphic>GAGTACTGTAGCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGRATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAATTCGATTTTCTTCTTCTATTTTCATCTTCCCTGAATTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTACTGTAGTTGTTTCATCAG</pcr_primer_p1>
		<pcr_primer_p2>GAGACGGTTTTTAAGGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGRATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</canonical_amplicon>
		<polymorphic_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGRATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36243</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140838</contig_pos>
        <strand>+</strand>
        <context>rattactgta[G/T]ttktttcrty</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTA</left_flank>
        <right_flank>TTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAATTCGATTTTCTTCTTCTATTTTCATCTTCCCTGAATTGTGAACAATCGG</canonical>
            <polymorphic>GCTTTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAKTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAATTCGATTTTCTTCTTCTATTTTCATCTTCCCTGAATTGTGAACAATCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>400 70 44 36 35 35 35 35 35 35 35 35 34 34 34 34 34</canonical_bands>
                <polymorphic_bands>400 70 70 44 36 35 35 35 35 35 35 34 34 34 34 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTACTGTAGTTGTTTCATCAG</pcr_primer_p1>
		<pcr_primer_p2>GAGACGGTTTTTAAGGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</canonical_amplicon>
		<polymorphic_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAKTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36244</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140841</contig_pos>
        <strand>+</strand>
        <context>tactgtaktt[G/T]tttcrtyara</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTT</left_flank>
        <right_flank>TTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAATTCGATTTTCTTCTTCTATTTTCATCTTCCCTGAATTGTGAACAATCGGCTC</canonical>
            <polymorphic>TTTTTAATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTKTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAATTCGATTTTCTTCTTCTATTTTCATCTTCCCTGAATTGTGAACAATCGGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTACTGTAGTTGTTTCATCAG</pcr_primer_p1>
		<pcr_primer_p2>GAGACGGTTTTTAAGGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</canonical_amplicon>
		<polymorphic_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTKTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36245</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140846</contig_pos>
        <strand>+</strand>
        <context>takttktttc[A/G]tyaraamrtt</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTC</left_flank>
        <right_flank>TTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAATTCGATTTTCTTCTTCTATTTTCATCTTCCCTGAATTGTGAACAATCGGCTCCTGCT</canonical>
            <polymorphic>AATTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCRTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAATTCGATTTTCTTCTTCTATTTTCATCTTCCCTGAATTGTGAACAATCGGCTCCTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATTACTGTAGTTGTTTCATCAG</pcr_primer_p1>
		<pcr_primer_p2>GAGACGGTTTTTAAGGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</canonical_amplicon>
		<polymorphic_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCRTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36246</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140848</contig_pos>
        <strand>+</strand>
        <context>kttktttcrt[C/T]araamrttty</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGT</left_flank>
        <right_flank>AAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAATTCGATTTTCTTCTTCTATTTTCATCTTCCCTGAATTGTGAACAATCGGCTCCTGCTCC</canonical>
            <polymorphic>TTCATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTYAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAATTCGATTTTCTTCTTCTATTTTCATCTTCCCTGAATTGTGAACAATCGGCTCCTGCTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>362 360 139 85 26 18 10</canonical_bands>
                <polymorphic_bands>362 360 149 85 26 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTACTGTAGTTGTTTCATCAG</pcr_primer_p1>
		<pcr_primer_p2>GAGACGGTTTTTAAGGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</canonical_amplicon>
		<polymorphic_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTYAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36247</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140850</contig_pos>
        <strand>+</strand>
        <context>tktttcrtya[A/G]aamrtttyaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTA</left_flank>
        <right_flank>AAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAATTCGATTTTCTTCTTCTATTTTCATCTTCCCTGAATTGTGAACAATCGGCTCCTGCTCCTC</canonical>
            <polymorphic>CATGTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTARAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAATTCGATTTTCTTCTTCTATTTTCATCTTCCCTGAATTGTGAACAATCGGCTCCTGCTCCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>364 358 139 85 26 18 10</canonical_bands>
                <polymorphic_bands>364 358 149 85 26 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTACTGTAGTTGTTTCATCAG</pcr_primer_p1>
		<pcr_primer_p2>GAGACGGTTTTTAAGGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</canonical_amplicon>
		<polymorphic_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTARAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36248</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140853</contig_pos>
        <strand>+</strand>
        <context>ttcrtyaraa[A/C]rtttyaatgg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAA</left_flank>
        <right_flank>ATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAATTCGATTTTCTTCTTCTATTTTCATCTTCCCTGAATTGTGAACAATCGGCTCCTGCTCCTCCCT</canonical>
            <polymorphic>GTTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAMATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAATTCGATTTTCTTCTTCTATTTTCATCTTCCCTGAATTGTGAACAATCGGCTCCTGCTCCTCCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>364 360 139 66 37 27 7</canonical_bands>
                <polymorphic_bands>364 360 166 66 37 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>360 188 139 102 65 37 35 31 27 9 7</canonical_bands>
                <polymorphic_bands>360 188 166 102 65 37 35 31 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTACTGTAGTTGTTTCATCAG</pcr_primer_p1>
		<pcr_primer_p2>GAGACGGTTTTTAAGGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</canonical_amplicon>
		<polymorphic_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAMATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36249</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140854</contig_pos>
        <strand>+</strand>
        <context>tcrtyaraam[A/G]tttyaatgga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAA</left_flank>
        <right_flank>TTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAATTCGATTTTCTTCTTCTATTTTCATCTTCCCTGAATTGTGAACAATCGGCTCCTGCTCCTCCCTT</canonical>
            <polymorphic>TTTTAGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAARTTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAATTCGATTTTCTTCTTCTATTTTCATCTTCCCTGAATTGTGAACAATCGGCTCCTGCTCCTCCCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>364 359 139 67 37 27 7</canonical_bands>
                <polymorphic_bands>364 359 166 67 37 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>359 188 139 102 65 37 35 32 27 9 7</canonical_bands>
                <polymorphic_bands>359 188 166 102 65 37 35 32 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTACTGTAGTTGTTTCATCAG</pcr_primer_p1>
		<pcr_primer_p2>GAGACGGTTTTTAAGGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</canonical_amplicon>
		<polymorphic_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAARTTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36250</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140858</contig_pos>
        <strand>+</strand>
        <context>yaraamrttt[C/T]aatggattac</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTT</left_flank>
        <right_flank>AATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAATTCGATTTTCTTCTTCTATTTTCATCTTCCCTGAATTGTGAACAATCGGCTCCTGCTCCTCCCTTCTCG</canonical>
            <polymorphic>AGTCAAAATGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTYAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAATTCGATTTTCTTCTTCTATTTTCATCTTCCCTGAATTGTGAACAATCGGCTCCTGCTCCTCCCTTCTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>372 350 139 85 26 18 10</canonical_bands>
                <polymorphic_bands>372 350 139 85 36 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTACTGTAGTTGTTTCATCAG</pcr_primer_p1>
		<pcr_primer_p2>GAGACGGTTTTTAAGGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</canonical_amplicon>
		<polymorphic_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTYAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36251</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>140885</contig_pos>
        <strand></strand>
        <context>tttcgaattt[A/G]aaatttacaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTT</left_flank>
        <right_flank>AAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAATTCGATTTTCTTCTTCTATTTTCATCTTCCCTGAATTGTGAACAATCGGCTCCTGCTCCTCCCTTCTCGCTACAATCGTCTCCAGCTTCTCTTTCG</canonical>
            <polymorphic>AGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTRAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTCTCTCGTCCCTATCACCACAATCGAACACCAATCTGCTGGCTTCATCCTCTTGGCTATCCATTGCTCATCCGACGAAATTATTTGAATTACCGCCTTTTTCCCGAGAGTGAAAACTGCCAAAGCTAGTAGAGTTTTCAGGGGAACAGCTTGGAGCCAGCGCAAGTAGGCGGGGCTTGAGAAGTCGTCAATTTTTATATGATTTTGGATATTTTCCTTAGATTTGATGATTAGATTTTGGAGCTTCTCCTGTAAATTTTGAGTCGAGGTCTCTGAATCTTGGTCCTTCTGAATTCGATTTTCTTCTTCTATTTTCATCTTCCCTGAATTGTGAACAATCGGCTCCTGCTCCTCCCTTCTCGCTACAATCGTCTCCAGCTTCTCTTTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>399 323 139 85 26 18 10</canonical_bands>
                <polymorphic_bands>399 323 139 111 18 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTACTGTAGTTGTTTCATCAG</pcr_primer_p1>
		<pcr_primer_p2>GAGACGGTTTTTAAGGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTAAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</canonical_amplicon>
		<polymorphic_amplicon>GGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTGGTTCTTTCGTTAAAAAATTTCAATGGATTACTGTAGTTTTTCATTCGAAACTTTCAATGGATTACTGTAGTTGTTTCATTAGAAGGTTTCCATGGATTACTGTAGTTGTTTCATCAGAACGTTTCAATGGATTACTGTAGTTTTTTCGTTAAAAAATTTTAATGGATTACTGTAGTTTTCGAATTTRAAATTTACAAAAACTACTGTAGTTTTTTTCATCAGAACGTTTCAATGGATTACTGTAGTCTATTTTTTCGAAGTTCCTCACCTTAACCCCCAGCAAGTCCTTAAAAACCGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36252</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>177132</contig_pos>
        <strand></strand>
        <context>aaaaattgaa[A/G]aaagtgtaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAACACTAACCAGGTAGAAGAAGAACAAAGATACATTCAAAAAATTGAA</left_flank>
        <right_flank>AAAGTGTAATACTGGCATAACTTTCTTAGTTTTCGCCCAGTTTTAATGAA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGGTTCCTAGAAAAAATAATAATTTTCGAAAAATTTTGTGAATGCAAAGTTTCCAATCTATGTCTGTTTTACACTCTCCAAAACTTTCAAAGTGATCGGAAACTTGACAGTCCAGATCCGGACTCTTGAAAATGGTCTGAATAGCCAAAATGGGAAAACGTCAACTGAATATTATTTTTTTTTGTATGCATATCTTACTGGTACTGTACATTGTTAATTTTAATAACTAAAAACTCACATTCTCAGAAAATGACCCAGAAGGGAATAAATCATAGAAATACTTAGAAAAATCATTTAAAAAAAATAGGCCTCCACAATCAGAAGGTGGCCAAGAAGAAGAAGAAATGACTAAAAAGTGTCTCGTTAGGCACACAAGGTGCCAGAGATTTGGAAGCCCAGACGTCCTTGTTACATTTTTCTGCCTTTGTTTAACTTTTCTGCAAACAAGAACACTAACCAGGTAGAAGAAGAACAAAGATACATTCAAAAAATTGAAAAAAGTGTAATACTGGCATAACTTTCTTAGTTTTCGCCCAGTTTTAATGAAAGTTATATTTTTGAGTTTCTCTTGTTAAGAGCTTCAAAATGAGTATAAACATGGCCTACTTTCTCAAAATTTCGAATTTCTTGTGGTCCATGCTCCTTTAAACTCAAAAATCATTTTTCACTAAACCTAGGAACGATTATGCTCATTTTAAGACTCTGAACACGCACAATTCAAGTTTAACAACGGAACATCGGAAAAAGAATACCGTAACCAGGTAACTGGAGAACCGAGAAATTATTGAATATCAGGAAAAGTGCCCTAAAATTGTACAAAGATGTTTCAGAGAACGTGATGTACAAATTCAAAATCAACACAATGCGAGCTTCAAAATGATTATAAACATGACCTACTTCCTTAAAGTTTCAAATTTCTTGTGGTCCATGCGCCTTTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAACGCATGTAGATT</canonical>
            <polymorphic>TTTGGGTTCCTAGAAAAAATAATAATTTTCGAAAAATTTTGTGAATGCAAAGTTTCCAATCTATGTCTGTTTTACACTCTCCAAAACTTTCAAAGTGATCGGAAACTTGACAGTCCAGATCCGGACTCTTGAAAATGGTCTGAATAGCCAAAATGGGAAAACGTCAACTGAATATTATTTTTTTTTGTATGCATATCTTACTGGTACTGTACATTGTTAATTTTAATAACTAAAAACTCACATTCTCAGAAAATGACCCAGAAGGGAATAAATCATAGAAATACTTAGAAAAATCATTTAAAAAAAATAGGCCTCCACAATCAGAAGGTGGCCAAGAAGAAGAAGAAATGACTAAAAAGTGTCTCGTTAGGCACACAAGGTGCCAGAGATTTGGAAGCCCAGACGTCCTTGTTACATTTTTCTGCCTTTGTTTAACTTTTCTGCAAACAAGAACACTAACCAGGTAGAAGAAGAACAAAGATACATTCAAAAAATTGAARAAAGTGTAATACTGGCATAACTTTCTTAGTTTTCGCCCAGTTTTAATGAAAGTTATATTTTTGAGTTTCTCTTGTTAAGAGCTTCAAAATGAGTATAAACATGGCCTACTTTCTCAAAATTTCGAATTTCTTGTGGTCCATGCTCCTTTAAACTCAAAAATCATTTTTCACTAAACCTAGGAACGATTATGCTCATTTTAAGACTCTGAACACGCACAATTCAAGTTTAACAACGGAACATCGGAAAAAGAATACCGTAACCAGGTAACTGGAGAACCGAGAAATTATTGAATATCAGGAAAAGTGCCCTAAAATTGTACAAAGATGTTTCAGAGAACGTGATGTACAAATTCAAAATCAACACAATGCGAGCTTCAAAATGATTATAAACATGACCTACTTCCTTAAAGTTTCAAATTTCTTGTGGTCCATGCGCCTTTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAACGCATGTAGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTGCAAACAAGAACACTA</pcr_primer_p1>
		<pcr_primer_p2>GTTACCTGGTTACGGTATTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>333</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTGCAAACAAGAACACTAACCAGGTAGAAGAAGAACAAAGATACATTCAAAAAATTGAAAAAAGTGTAATACTGGCATAACTTTCTTAGTTTTCGCCCAGTTTTAATGAAAGTTATATTTTTGAGTTTCTCTTGTTAAGAGCTTCAAAATGAGTATAAACATGGCCTACTTTCTCAAAATTTCGAATTTCTTGTGGTCCATGCTCCTTTAAACTCAAAAATCATTTTTCACTAAACCTAGGAACGATTATGCTCATTTTAAGACTCTGAACACGCACAATTCAAGTTTAACAACGGAACATCGGAAAAAGAATACCGTAACCAGGTAAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTGCAAACAAGAACACTAACCAGGTAGAAGAAGAACAAAGATACATTCAAAAAATTGAARAAAGTGTAATACTGGCATAACTTTCTTAGTTTTCGCCCAGTTTTAATGAAAGTTATATTTTTGAGTTTCTCTTGTTAAGAGCTTCAAAATGAGTATAAACATGGCCTACTTTCTCAAAATTTCGAATTTCTTGTGGTCCATGCTCCTTTAAACTCAAAAATCATTTTTCACTAAACCTAGGAACGATTATGCTCATTTTAAGACTCTGAACACGCACAATTCAAGTTTAACAACGGAACATCGGAAAAAGAATACCGTAACCAGGTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36253</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>177176</contig_pos>
        <strand></strand>
        <context>cgcccagttt[T/C]aatgaaagtt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTGAAAAAAGTGTAATACTGGCATAACTTTCTTAGTTTTCGCCCAGTTT</left_flank>
        <right_flank>AATGAAAGTTATATTTTTGAGTTTCTCTTGTTAAGAGCTTCAAAATGAGT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGCAAAGTTTCCAATCTATGTCTGTTTTACACTCTCCAAAACTTTCAAAGTGATCGGAAACTTGACAGTCCAGATCCGGACTCTTGAAAATGGTCTGAATAGCCAAAATGGGAAAACGTCAACTGAATATTATTTTTTTTTGTATGCATATCTTACTGGTACTGTACATTGTTAATTTTAATAACTAAAAACTCACATTCTCAGAAAATGACCCAGAAGGGAATAAATCATAGAAATACTTAGAAAAATCATTTAAAAAAAATAGGCCTCCACAATCAGAAGGTGGCCAAGAAGAAGAAGAAATGACTAAAAAGTGTCTCGTTAGGCACACAAGGTGCCAGAGATTTGGAAGCCCAGACGTCCTTGTTACATTTTTCTGCCTTTGTTTAACTTTTCTGCAAACAAGAACACTAACCAGGTAGAAGAAGAACAAAGATACATTCAAAAAATTGAAAAAAGTGTAATACTGGCATAACTTTCTTAGTTTTCGCCCAGTTTTAATGAAAGTTATATTTTTGAGTTTCTCTTGTTAAGAGCTTCAAAATGAGTATAAACATGGCCTACTTTCTCAAAATTTCGAATTTCTTGTGGTCCATGCTCCTTTAAACTCAAAAATCATTTTTCACTAAACCTAGGAACGATTATGCTCATTTTAAGACTCTGAACACGCACAATTCAAGTTTAACAACGGAACATCGGAAAAAGAATACCGTAACCAGGTAACTGGAGAACCGAGAAATTATTGAATATCAGGAAAAGTGCCCTAAAATTGTACAAAGATGTTTCAGAGAACGTGATGTACAAATTCAAAATCAACACAATGCGAGCTTCAAAATGATTATAAACATGACCTACTTCCTTAAAGTTTCAAATTTCTTGTGGTCCATGCGCCTTTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAACGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATCGA</canonical>
            <polymorphic>ATGCAAAGTTTCCAATCTATGTCTGTTTTACACTCTCCAAAACTTTCAAAGTGATCGGAAACTTGACAGTCCAGATCCGGACTCTTGAAAATGGTCTGAATAGCCAAAATGGGAAAACGTCAACTGAATATTATTTTTTTTTGTATGCATATCTTACTGGTACTGTACATTGTTAATTTTAATAACTAAAAACTCACATTCTCAGAAAATGACCCAGAAGGGAATAAATCATAGAAATACTTAGAAAAATCATTTAAAAAAAATAGGCCTCCACAATCAGAAGGTGGCCAAGAAGAAGAAGAAATGACTAAAAAGTGTCTCGTTAGGCACACAAGGTGCCAGAGATTTGGAAGCCCAGACGTCCTTGTTACATTTTTCTGCCTTTGTTTAACTTTTCTGCAAACAAGAACACTAACCAGGTAGAAGAAGAACAAAGATACATTCAAAAAATTGAAAAAAGTGTAATACTGGCATAACTTTCTTAGTTTTCGCCCAGTTTYAATGAAAGTTATATTTTTGAGTTTCTCTTGTTAAGAGCTTCAAAATGAGTATAAACATGGCCTACTTTCTCAAAATTTCGAATTTCTTGTGGTCCATGCTCCTTTAAACTCAAAAATCATTTTTCACTAAACCTAGGAACGATTATGCTCATTTTAAGACTCTGAACACGCACAATTCAAGTTTAACAACGGAACATCGGAAAAAGAATACCGTAACCAGGTAACTGGAGAACCGAGAAATTATTGAATATCAGGAAAAGTGCCCTAAAATTGTACAAAGATGTTTCAGAGAACGTGATGTACAAATTCAAAATCAACACAATGCGAGCTTCAAAATGATTATAAACATGACCTACTTCCTTAAAGTTTCAAATTTCTTGTGGTCCATGCGCCTTTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAACGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>178 173 134 111 105 75 73 50 34 32 29 6</canonical_bands>
                <polymorphic_bands>178 173 143 134 105 75 73 50 34 29 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAGGTAGAAGAAGAACAAAGAT</pcr_primer_p1>
		<pcr_primer_p2>TTACCTGGTTACGGTATTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>CCAGGTAGAAGAAGAACAAAGATACATTCAAAAAATTGAAAAAAGTGTAATACTGGCATAACTTTCTTAGTTTTCGCCCAGTTTTAATGAAAGTTATATTTTTGAGTTTCTCTTGTTAAGAGCTTCAAAATGAGTATAAACATGGCCTACTTTCTCAAAATTTCGAATTTCTTGTGGTCCATGCTCCTTTAAACTCAAAAATCATTTTTCACTAAACCTAGGAACGATTATGCTCATTTTAAGACTCTGAACACGCACAATTCAAGTTTAACAACGGAACATCGGAAAAAGAATACCGTAACCAGGTAA</canonical_amplicon>
		<polymorphic_amplicon>CCAGGTAGAAGAAGAACAAAGATACATTCAAAAAATTGAAAAAAGTGTAATACTGGCATAACTTTCTTAGTTTTCGCCCAGTTTYAATGAAAGTTATATTTTTGAGTTTCTCTTGTTAAGAGCTTCAAAATGAGTATAAACATGGCCTACTTTCTCAAAATTTCGAATTTCTTGTGGTCCATGCTCCTTTAAACTCAAAAATCATTTTTCACTAAACCTAGGAACGATTATGCTCATTTTAAGACTCTGAACACGCACAATTCAAGTTTAACAACGGAACATCGGAAAAAGAATACCGTAACCAGGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36254</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>177236</contig_pos>
        <strand></strand>
        <context>tataaacatg[G/A]cctactttct</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TATATTTTTGAGTTTCTCTTGTTAAGAGCTTCAAAATGAGTATAAACATG</left_flank>
        <right_flank>CCTACTTTCTCAAAATTTCGAATTTCTTGTGGTCCATGCTCCTTTAAACT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTGACAGTCCAGATCCGGACTCTTGAAAATGGTCTGAATAGCCAAAATGGGAAAACGTCAACTGAATATTATTTTTTTTTGTATGCATATCTTACTGGTACTGTACATTGTTAATTTTAATAACTAAAAACTCACATTCTCAGAAAATGACCCAGAAGGGAATAAATCATAGAAATACTTAGAAAAATCATTTAAAAAAAATAGGCCTCCACAATCAGAAGGTGGCCAAGAAGAAGAAGAAATGACTAAAAAGTGTCTCGTTAGGCACACAAGGTGCCAGAGATTTGGAAGCCCAGACGTCCTTGTTACATTTTTCTGCCTTTGTTTAACTTTTCTGCAAACAAGAACACTAACCAGGTAGAAGAAGAACAAAGATACATTCAAAAAATTGAAAAAAGTGTAATACTGGCATAACTTTCTTAGTTTTCGCCCAGTTTTAATGAAAGTTATATTTTTGAGTTTCTCTTGTTAAGAGCTTCAAAATGAGTATAAACATGGCCTACTTTCTCAAAATTTCGAATTTCTTGTGGTCCATGCTCCTTTAAACTCAAAAATCATTTTTCACTAAACCTAGGAACGATTATGCTCATTTTAAGACTCTGAACACGCACAATTCAAGTTTAACAACGGAACATCGGAAAAAGAATACCGTAACCAGGTAACTGGAGAACCGAGAAATTATTGAATATCAGGAAAAGTGCCCTAAAATTGTACAAAGATGTTTCAGAGAACGTGATGTACAAATTCAAAATCAACACAATGCGAGCTTCAAAATGATTATAAACATGACCTACTTCCTTAAAGTTTCAAATTTCTTGTGGTCCATGCGCCTTTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAACGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATCGAGAAAAACGCATCGAAAATTCGCTGAAAGCCCTTAGGGACGAGGTTTTTTCTAGGCCGCCC</canonical>
            <polymorphic>ACTTGACAGTCCAGATCCGGACTCTTGAAAATGGTCTGAATAGCCAAAATGGGAAAACGTCAACTGAATATTATTTTTTTTTGTATGCATATCTTACTGGTACTGTACATTGTTAATTTTAATAACTAAAAACTCACATTCTCAGAAAATGACCCAGAAGGGAATAAATCATAGAAATACTTAGAAAAATCATTTAAAAAAAATAGGCCTCCACAATCAGAAGGTGGCCAAGAAGAAGAAGAAATGACTAAAAAGTGTCTCGTTAGGCACACAAGGTGCCAGAGATTTGGAAGCCCAGACGTCCTTGTTACATTTTTCTGCCTTTGTTTAACTTTTCTGCAAACAAGAACACTAACCAGGTAGAAGAAGAACAAAGATACATTCAAAAAATTGAAAAAAGTGTAATACTGGCATAACTTTCTTAGTTTTCGCCCAGTTTTAATGAAAGTTATATTTTTGAGTTTCTCTTGTTAAGAGCTTCAAAATGAGTATAAACATGRCCTACTTTCTCAAAATTTCGAATTTCTTGTGGTCCATGCTCCTTTAAACTCAAAAATCATTTTTCACTAAACCTAGGAACGATTATGCTCATTTTAAGACTCTGAACACGCACAATTCAAGTTTAACAACGGAACATCGGAAAAAGAATACCGTAACCAGGTAACTGGAGAACCGAGAAATTATTGAATATCAGGAAAAGTGCCCTAAAATTGTACAAAGATGTTTCAGAGAACGTGATGTACAAATTCAAAATCAACACAATGCGAGCTTCAAAATGATTATAAACATGACCTACTTCCTTAAAGTTTCAAATTTCTTGTGGTCCATGCGCCTTTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAACGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATCGAGAAAAACGCATCGAAAATTCGCTGAAAGCCCTTAGGGACGAGGTTTTTTCTAGGCCGCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>494 273 207 20 6</canonical_bands>
                <polymorphic_bands>767 207 20 6</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>268 200 184 164 66 43 26 23 20 6</canonical_bands>
                <polymorphic_bands>291 200 184 164 66 43 26 20 6</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 273 207 20</canonical_bands>
                <polymorphic_bands>773 207 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAGGTAGAAGAAGAACAAAGAT</pcr_primer_p1>
		<pcr_primer_p2>TTACCTGGTTACGGTATTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>CCAGGTAGAAGAAGAACAAAGATACATTCAAAAAATTGAAAAAAGTGTAATACTGGCATAACTTTCTTAGTTTTCGCCCAGTTTTAATGAAAGTTATATTTTTGAGTTTCTCTTGTTAAGAGCTTCAAAATGAGTATAAACATGGCCTACTTTCTCAAAATTTCGAATTTCTTGTGGTCCATGCTCCTTTAAACTCAAAAATCATTTTTCACTAAACCTAGGAACGATTATGCTCATTTTAAGACTCTGAACACGCACAATTCAAGTTTAACAACGGAACATCGGAAAAAGAATACCGTAACCAGGTAA</canonical_amplicon>
		<polymorphic_amplicon>CCAGGTAGAAGAAGAACAAAGATACATTCAAAAAATTGAAAAAAGTGTAATACTGGCATAACTTTCTTAGTTTTCGCCCAGTTTTAATGAAAGTTATATTTTTGAGTTTCTCTTGTTAAGAGCTTCAAAATGAGTATAAACATGRCCTACTTTCTCAAAATTTCGAATTTCTTGTGGTCCATGCTCCTTTAAACTCAAAAATCATTTTTCACTAAACCTAGGAACGATTATGCTCATTTTAAGACTCTGAACACGCACAATTCAAGTTTAACAACGGAACATCGGAAAAAGAATACCGTAACCAGGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36255</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>177306</contig_pos>
        <strand></strand>
        <context>tttttcacta[A/C]acctaggaac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAATTTCTTGTGGTCCATGCTCCTTTAAACTCAAAAATCATTTTTCACTA</left_flank>
        <right_flank>ACCTAGGAACGATTATGCTCATTTTAAGACTCTGAACACGCACAATTCAA</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATTTTTTTTTGTATGCATATCTTACTGGTACTGTACATTGTTAATTTTAATAACTAAAAACTCACATTCTCAGAAAATGACCCAGAAGGGAATAAATCATAGAAATACTTAGAAAAATCATTTAAAAAAAATAGGCCTCCACAATCAGAAGGTGGCCAAGAAGAAGAAGAAATGACTAAAAAGTGTCTCGTTAGGCACACAAGGTGCCAGAGATTTGGAAGCCCAGACGTCCTTGTTACATTTTTCTGCCTTTGTTTAACTTTTCTGCAAACAAGAACACTAACCAGGTAGAAGAAGAACAAAGATACATTCAAAAAATTGAAAAAAGTGTAATACTGGCATAACTTTCTTAGTTTTCGCCCAGTTTTAATGAAAGTTATATTTTTGAGTTTCTCTTGTTAAGAGCTTCAAAATGAGTATAAACATGGCCTACTTTCTCAAAATTTCGAATTTCTTGTGGTCCATGCTCCTTTAAACTCAAAAATCATTTTTCACTAAACCTAGGAACGATTATGCTCATTTTAAGACTCTGAACACGCACAATTCAAGTTTAACAACGGAACATCGGAAAAAGAATACCGTAACCAGGTAACTGGAGAACCGAGAAATTATTGAATATCAGGAAAAGTGCCCTAAAATTGTACAAAGATGTTTCAGAGAACGTGATGTACAAATTCAAAATCAACACAATGCGAGCTTCAAAATGATTATAAACATGACCTACTTCCTTAAAGTTTCAAATTTCTTGTGGTCCATGCGCCTTTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAACGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATCGAGAAAAACGCATCGAAAATTCGCTGAAAGCCCTTAGGGACGAGGTTTTTTCTAGGCCGCCCGGTGAGTTAAAAGCGCGCNNNNNNNNNNTACTCACCACGGCGGCCTAGAAAAAACCTCGTCCCTAAGGGC</canonical>
            <polymorphic>TTATTTTTTTTTGTATGCATATCTTACTGGTACTGTACATTGTTAATTTTAATAACTAAAAACTCACATTCTCAGAAAATGACCCAGAAGGGAATAAATCATAGAAATACTTAGAAAAATCATTTAAAAAAAATAGGCCTCCACAATCAGAAGGTGGCCAAGAAGAAGAAGAAATGACTAAAAAGTGTCTCGTTAGGCACACAAGGTGCCAGAGATTTGGAAGCCCAGACGTCCTTGTTACATTTTTCTGCCTTTGTTTAACTTTTCTGCAAACAAGAACACTAACCAGGTAGAAGAAGAACAAAGATACATTCAAAAAATTGAAAAAAGTGTAATACTGGCATAACTTTCTTAGTTTTCGCCCAGTTTTAATGAAAGTTATATTTTTGAGTTTCTCTTGTTAAGAGCTTCAAAATGAGTATAAACATGGCCTACTTTCTCAAAATTTCGAATTTCTTGTGGTCCATGCTCCTTTAAACTCAAAAATCATTTTTCACTAMACCTAGGAACGATTATGCTCATTTTAAGACTCTGAACACGCACAATTCAAGTTTAACAACGGAACATCGGAAAAAGAATACCGTAACCAGGTAACTGGAGAACCGAGAAATTATTGAATATCAGGAAAAGTGCCCTAAAATTGTACAAAGATGTTTCAGAGAACGTGATGTACAAATTCAAAATCAACACAATGCGAGCTTCAAAATGATTATAAACATGACCTACTTCCTTAAAGTTTCAAATTTCTTGTGGTCCATGCGCCTTTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAACGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATCGAGAAAAACGCATCGAAAATTCGCTGAAAGCCCTTAGGGACGAGGTTTTTTCTAGGCCGCCCGGTGAGTTAAAAGCGCGCNNNNNNNNNNTACTCACCACGGCGGCCTAGAAAAAACCTCGTCCCTAAGGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGGTAGAAGAAGAACAAAGAT</pcr_primer_p1>
		<pcr_primer_p2>TTACCTGGTTACGGTATTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>CCAGGTAGAAGAAGAACAAAGATACATTCAAAAAATTGAAAAAAGTGTAATACTGGCATAACTTTCTTAGTTTTCGCCCAGTTTTAATGAAAGTTATATTTTTGAGTTTCTCTTGTTAAGAGCTTCAAAATGAGTATAAACATGGCCTACTTTCTCAAAATTTCGAATTTCTTGTGGTCCATGCTCCTTTAAACTCAAAAATCATTTTTCACTAAACCTAGGAACGATTATGCTCATTTTAAGACTCTGAACACGCACAATTCAAGTTTAACAACGGAACATCGGAAAAAGAATACCGTAACCAGGTAA</canonical_amplicon>
		<polymorphic_amplicon>CCAGGTAGAAGAAGAACAAAGATACATTCAAAAAATTGAAAAAAGTGTAATACTGGCATAACTTTCTTAGTTTTCGCCCAGTTTTAATGAAAGTTATATTTTTGAGTTTCTCTTGTTAAGAGCTTCAAAATGAGTATAAACATGGCCTACTTTCTCAAAATTTCGAATTTCTTGTGGTCCATGCTCCTTTAAACTCAAAAATCATTTTTCACTAMACCTAGGAACGATTATGCTCATTTTAAGACTCTGAACACGCACAATTCAAGTTTAACAACGGAACATCGGAAAAAGAATACCGTAACCAGGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36256</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>177334</contig_pos>
        <strand></strand>
        <context>ctcattttaa[G/A]actctgaaca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACTCAAAAATCATTTTTCACTAAACCTAGGAACGATTATGCTCATTTTAA</left_flank>
        <right_flank>ACTCTGAACACGCACAATTCAAGTTTAACAACGGAACATCGGAAAAAGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTACTGTACATTGTTAATTTTAATAACTAAAAACTCACATTCTCAGAAAATGACCCAGAAGGGAATAAATCATAGAAATACTTAGAAAAATCATTTAAAAAAAATAGGCCTCCACAATCAGAAGGTGGCCAAGAAGAAGAAGAAATGACTAAAAAGTGTCTCGTTAGGCACACAAGGTGCCAGAGATTTGGAAGCCCAGACGTCCTTGTTACATTTTTCTGCCTTTGTTTAACTTTTCTGCAAACAAGAACACTAACCAGGTAGAAGAAGAACAAAGATACATTCAAAAAATTGAAAAAAGTGTAATACTGGCATAACTTTCTTAGTTTTCGCCCAGTTTTAATGAAAGTTATATTTTTGAGTTTCTCTTGTTAAGAGCTTCAAAATGAGTATAAACATGGCCTACTTTCTCAAAATTTCGAATTTCTTGTGGTCCATGCTCCTTTAAACTCAAAAATCATTTTTCACTAAACCTAGGAACGATTATGCTCATTTTAAGACTCTGAACACGCACAATTCAAGTTTAACAACGGAACATCGGAAAAAGAATACCGTAACCAGGTAACTGGAGAACCGAGAAATTATTGAATATCAGGAAAAGTGCCCTAAAATTGTACAAAGATGTTTCAGAGAACGTGATGTACAAATTCAAAATCAACACAATGCGAGCTTCAAAATGATTATAAACATGACCTACTTCCTTAAAGTTTCAAATTTCTTGTGGTCCATGCGCCTTTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAACGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATCGAGAAAAACGCATCGAAAATTCGCTGAAAGCCCTTAGGGACGAGGTTTTTTCTAGGCCGCCCGGTGAGTTAAAAGCGCGCNNNNNNNNNNTACTCACCACGGCGGCCTAGAAAAAACCTCGTCCCTAAGGGCTTTCAGCGTATTTTTCGATGCGTTTTTC</canonical>
            <polymorphic>GGTACTGTACATTGTTAATTTTAATAACTAAAAACTCACATTCTCAGAAAATGACCCAGAAGGGAATAAATCATAGAAATACTTAGAAAAATCATTTAAAAAAAATAGGCCTCCACAATCAGAAGGTGGCCAAGAAGAAGAAGAAATGACTAAAAAGTGTCTCGTTAGGCACACAAGGTGCCAGAGATTTGGAAGCCCAGACGTCCTTGTTACATTTTTCTGCCTTTGTTTAACTTTTCTGCAAACAAGAACACTAACCAGGTAGAAGAAGAACAAAGATACATTCAAAAAATTGAAAAAAGTGTAATACTGGCATAACTTTCTTAGTTTTCGCCCAGTTTTAATGAAAGTTATATTTTTGAGTTTCTCTTGTTAAGAGCTTCAAAATGAGTATAAACATGGCCTACTTTCTCAAAATTTCGAATTTCTTGTGGTCCATGCTCCTTTAAACTCAAAAATCATTTTTCACTAAACCTAGGAACGATTATGCTCATTTTAARACTCTGAACACGCACAATTCAAGTTTAACAACGGAACATCGGAAAAAGAATACCGTAACCAGGTAACTGGAGAACCGAGAAATTATTGAATATCAGGAAAAGTGCCCTAAAATTGTACAAAGATGTTTCAGAGAACGTGATGTACAAATTCAAAATCAACACAATGCGAGCTTCAAAATGATTATAAACATGACCTACTTCCTTAAAGTTTCAAATTTCTTGTGGTCCATGCGCCTTTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAACGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATCGAGAAAAACGCATCGAAAATTCGCTGAAAGCCCTTAGGGACGAGGTTTTTTCTAGGCCGCCCGGTGAGTTAAAAGCGCGCNNNNNNNNNNTACTCACCACGGCGGCCTAGAAAAAACCTCGTCCCTAAGGGCTTTCAGCGTATTTTTCGATGCGTTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAGGTAGAAGAAGAACAAAGAT</pcr_primer_p1>
		<pcr_primer_p2>TTACCTGGTTACGGTATTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>CCAGGTAGAAGAAGAACAAAGATACATTCAAAAAATTGAAAAAAGTGTAATACTGGCATAACTTTCTTAGTTTTCGCCCAGTTTTAATGAAAGTTATATTTTTGAGTTTCTCTTGTTAAGAGCTTCAAAATGAGTATAAACATGGCCTACTTTCTCAAAATTTCGAATTTCTTGTGGTCCATGCTCCTTTAAACTCAAAAATCATTTTTCACTAAACCTAGGAACGATTATGCTCATTTTAAGACTCTGAACACGCACAATTCAAGTTTAACAACGGAACATCGGAAAAAGAATACCGTAACCAGGTAA</canonical_amplicon>
		<polymorphic_amplicon>CCAGGTAGAAGAAGAACAAAGATACATTCAAAAAATTGAAAAAAGTGTAATACTGGCATAACTTTCTTAGTTTTCGCCCAGTTTTAATGAAAGTTATATTTTTGAGTTTCTCTTGTTAAGAGCTTCAAAATGAGTATAAACATGGCCTACTTTCTCAAAATTTCGAATTTCTTGTGGTCCATGCTCCTTTAAACTCAAAAATCATTTTTCACTAAACCTAGGAACGATTATGCTCATTTTAARACTCTGAACACGCACAATTCAAGTTTAACAACGGAACATCGGAAAAAGAATACCGTAACCAGGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36257</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>177535</contig_pos>
        <strand></strand>
        <context>tgacctactt[C/T]cttaaagttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAAATCAACACAATGCGAGCTTCAAAATGATTATAAACATGACCTACTT</left_flank>
        <right_flank>CTTAAAGTTTCAAATTTCTTGTGGTCCATGCGCCTTTAAAGGTGGTGTAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTCCTTGTTACATTTTTCTGCCTTTGTTTAACTTTTCTGCAAACAAGAACACTAACCAGGTAGAAGAAGAACAAAGATACATTCAAAAAATTGAAAAAAGTGTAATACTGGCATAACTTTCTTAGTTTTCGCCCAGTTTTAATGAAAGTTATATTTTTGAGTTTCTCTTGTTAAGAGCTTCAAAATGAGTATAAACATGGCCTACTTTCTCAAAATTTCGAATTTCTTGTGGTCCATGCTCCTTTAAACTCAAAAATCATTTTTCACTAAACCTAGGAACGATTATGCTCATTTTAAGACTCTGAACACGCACAATTCAAGTTTAACAACGGAACATCGGAAAAAGAATACCGTAACCAGGTAACTGGAGAACCGAGAAATTATTGAATATCAGGAAAAGTGCCCTAAAATTGTACAAAGATGTTTCAGAGAACGTGATGTACAAATTCAAAATCAACACAATGCGAGCTTCAAAATGATTATAAACATGACCTACTTCCTTAAAGTTTCAAATTTCTTGTGGTCCATGCGCCTTTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAACGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATCGAGAAAAACGCATCGAAAATTCGCTGAAAGCCCTTAGGGACGAGGTTTTTTCTAGGCCGCCCGGTGAGTTAAAAGCGCGCNNNNNNNNNNTACTCACCACGGCGGCCTAGAAAAAACCTCGTCCCTAAGGGCTTTCAGCGTATTTTTCGATGCGTTTTTCTCGATGAAGGCATTTTTTTTGAATTTTTTCTTTATTTTTATGTCAATCTACATGCATTTCTGCACATTTTGATGCAATAAAAAATTTCACCGTACACCACCTTTAACCCCAAAAATCAAATTTCACCGAACCTAGGCATGATTATACTCATTTAAAAGCTCTCGACATGCCAAATTTGAATCTGACAATCAAACTTCAAAA</canonical>
            <polymorphic>CGTCCTTGTTACATTTTTCTGCCTTTGTTTAACTTTTCTGCAAACAAGAACACTAACCAGGTAGAAGAAGAACAAAGATACATTCAAAAAATTGAAAAAAGTGTAATACTGGCATAACTTTCTTAGTTTTCGCCCAGTTTTAATGAAAGTTATATTTTTGAGTTTCTCTTGTTAAGAGCTTCAAAATGAGTATAAACATGGCCTACTTTCTCAAAATTTCGAATTTCTTGTGGTCCATGCTCCTTTAAACTCAAAAATCATTTTTCACTAAACCTAGGAACGATTATGCTCATTTTAAGACTCTGAACACGCACAATTCAAGTTTAACAACGGAACATCGGAAAAAGAATACCGTAACCAGGTAACTGGAGAACCGAGAAATTATTGAATATCAGGAAAAGTGCCCTAAAATTGTACAAAGATGTTTCAGAGAACGTGATGTACAAATTCAAAATCAACACAATGCGAGCTTCAAAATGATTATAAACATGACCTACTTYCTTAAAGTTTCAAATTTCTTGTGGTCCATGCGCCTTTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAACGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCATCGAGAAAAACGCATCGAAAATTCGCTGAAAGCCCTTAGGGACGAGGTTTTTTCTAGGCCGCCCGGTGAGTTAAAAGCGCGCNNNNNNNNNNTACTCACCACGGCGGCCTAGAAAAAACCTCGTCCCTAAGGGCTTTCAGCGTATTTTTCGATGCGTTTTTCTCGATGAAGGCATTTTTTTTGAATTTTTTCTTTATTTTTATGTCAATCTACATGCATTTCTGCACATTTTGATGCAATAAAAAATTTCACCGTACACCACCTTTAACCCCAAAAATCAAATTTCACCGAACCTAGGCATGATTATACTCATTTAAAAGCTCTCGACATGCCAAATTTGAATCTGACAATCAAACTTCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAGAGAACGTGATGTACAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTTGTTTTGAAGTTTGATTGTC</pcr_primer_p2>
		<pcr_amplicon_size>580</pcr_amplicon_size>
		<canonical_amplicon>TTCAGAGAACGTGATGTACAAATTCAAAATCAACACAATGCGAGCTTCAAAATGATTATAAACATGACCTACTTCCTTAAAGTTTCAAATTTCTTGT</canonical_amplicon>
		<polymorphic_amplicon>TTCAGAGAACGTGATGTACAAATTCAAAATCAACACAATGCGAGCTTCAAAATGATTATAAACATGACCTACTTYCTTAAAGTTTCAAATTTCTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36258</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>204177</contig_pos>
        <strand></strand>
        <context>atatattatc[C/A]gttaatcaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TAAGTTGTCAACTAAGAAAACGTATTACATAATTCCACTTATATATTATC</left_flank>
        <right_flank>GTTAATCAATTTTCAATATATTTTATAGGAACCGAGCTAATTGAGCTCAA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCTACAAAAAACCATTAAATGTTAAAAGTGCATTCTCCTTGACCCCCATCATTTCTCTTCGATTGTTTTACAATTTAAATTTTCTCTGCGTCTCTCTATCTCTGTTTGCCTGCTAAGAATGAGATGGGTGTATGAAAAATATGATTGTCCTGGTGTGAATCATTTTTTCTTGTCACTTTTCTTTCTCGGTCAAATGTTCTGACCACTTTTATCAGCTCTTTTTGTTGTTTTTTCAGAGAACAGGATCTTTGGACTTTTGTAGGAAAATCGCCGAAAATCGGGGGTTACGGTAGTTTTCGTTTTGAGCCTTCTAAAGTTTCGGAAATTGAAATTTCGATCAGGTTTTAGGGATTTTCAATTTTAACGATTCCAAAAACCACAGAATGTCTAGTCACCCTATACCATCACTTTGAGCTCAATTAGCTCGGTTCCGGTGAATGATATCAATAAGTTGTCAACTAAGAAAACGTATTACATAATTCCACTTATATATTATCCGTTAATCAATTTTCAATATATTTTATAGGAACCGAGCTAATTGAGCTCAAAGTGTACGTAAAGTGTGGGCTTTTAGATTCCAAAATTTTAAAAATTCTAATATTATTTCTTGACAAAACACTGACGCATTTTTCGTACATTTCAACACCACCACAACACTTTTTCTCATTATTGTCAGTTTCCAATAGACCAAAAATTTTCCCAAAATTTCCATATTCATACATTAATGGATTTTTGGCGTCTATTTTCTACATATACACTTTTCGTTTGGCTACACTGTTTTACACTCTGCCAGATTTAATTTTCAGCGATTGCTTTTGAAAACCTGTGTCAGATTTCCCTATTTTTTAAACAATTGCTTGAGGCCACGCCCTTTTTCTCGCATTACTTGGGCTATGTGGGAAAAGGGGCGTGGCCTCCTCACTGTTGCGAAAGAACGCCTGTGGGGAGGGTGGCTCGCATTTGTAATGATTCATGATCAGAATCTGGTCGTTTGAAAA</canonical>
            <polymorphic>AACCTACAAAAAACCATTAAATGTTAAAAGTGCATTCTCCTTGACCCCCATCATTTCTCTTCGATTGTTTTACAATTTAAATTTTCTCTGCGTCTCTCTATCTCTGTTTGCCTGCTAAGAATGAGATGGGTGTATGAAAAATATGATTGTCCTGGTGTGAATCATTTTTTCTTGTCACTTTTCTTTCTCGGTCAAATGTTCTGACCACTTTTATCAGCTCTTTTTGTTGTTTTTTCAGAGAACAGGATCTTTGGACTTTTGTAGGAAAATCGCCGAAAATCGGGGGTTACGGTAGTTTTCGTTTTGAGCCTTCTAAAGTTTCGGAAATTGAAATTTCGATCAGGTTTTAGGGATTTTCAATTTTAACGATTCCAAAAACCACAGAATGTCTAGTCACCCTATACCATCACTTTGAGCTCAATTAGCTCGGTTCCGGTGAATGATATCAATAAGTTGTCAACTAAGAAAACGTATTACATAATTCCACTTATATATTATCMGTTAATCAATTTTCAATATATTTTATAGGAACCGAGCTAATTGAGCTCAAAGTGTACGTAAAGTGTGGGCTTTTAGATTCCAAAATTTTAAAAATTCTAATATTATTTCTTGACAAAACACTGACGCATTTTTCGTACATTTCAACACCACCACAACACTTTTTCTCATTATTGTCAGTTTCCAATAGACCAAAAATTTTCCCAAAATTTCCATATTCATACATTAATGGATTTTTGGCGTCTATTTTCTACATATACACTTTTCGTTTGGCTACACTGTTTTACACTCTGCCAGATTTAATTTTCAGCGATTGCTTTTGAAAACCTGTGTCAGATTTCCCTATTTTTTAAACAATTGCTTGAGGCCACGCCCTTTTTCTCGCATTACTTGGGCTATGTGGGAAAAGGGGCGTGGCCTCCTCACTGTTGCGAAAGAACGCCTGTGGGGAGGGTGGCTCGCATTTGTAATGATTCATGATCAGAATCTGGTCGTTTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTCGATCAGGTTTTAGG</pcr_primer_p1>
		<pcr_primer_p2>GAATCTAAAAGCCCACACTTTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTTCGATCAGGTTTTAGGGATTTTCAATTTTAACGATTCCAAAAACCACAGAATGTCTAGTCACCCTATACCATCACTTTGAGCTCAATTAGCTCGGTTCCGGTGAATGATATCAATAAGTTGTCAACTAAGAAAACGTATTACATAATTCCACTTATATATTATCCGTTAATCAATTTTCAATATATTTTATAGGAACCGAGCTAATTGAGCTCAAAGTGTACGTAAAGTGTGGGCTTTTAGATTC</canonical_amplicon>
		<polymorphic_amplicon>AAATTTCGATCAGGTTTTAGGGATTTTCAATTTTAACGATTCCAAAAACCACAGAATGTCTAGTCACCCTATACCATCACTTTGAGCTCAATTAGCTCGGTTCCGGTGAATGATATCAATAAGTTGTCAACTAAGAAAACGTATTACATAATTCCACTTATATATTATCMGTTAATCAATTTTCAATATATTTTATAGGAACCGAGCTAATTGAGCTCAAAGTGTACGTAAAGTGTGGGCTTTTAGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36259</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>204221</contig_pos>
        <strand></strand>
        <context>gagctaattg[A/C]gctcaaagtG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTATCCGTTAATCAATTTTCAATATATTTTATAGGAACCGAGCTAATTG</left_flank>
        <right_flank>GCTCAAAGTGTACGTAAAGTGTGGGCTTTTAGATTCCAAAATTTTAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCCCATCATTTCTCTTCGATTGTTTTACAATTTAAATTTTCTCTGCGTCTCTCTATCTCTGTTTGCCTGCTAAGAATGAGATGGGTGTATGAAAAATATGATTGTCCTGGTGTGAATCATTTTTTCTTGTCACTTTTCTTTCTCGGTCAAATGTTCTGACCACTTTTATCAGCTCTTTTTGTTGTTTTTTCAGAGAACAGGATCTTTGGACTTTTGTAGGAAAATCGCCGAAAATCGGGGGTTACGGTAGTTTTCGTTTTGAGCCTTCTAAAGTTTCGGAAATTGAAATTTCGATCAGGTTTTAGGGATTTTCAATTTTAACGATTCCAAAAACCACAGAATGTCTAGTCACCCTATACCATCACTTTGAGCTCAATTAGCTCGGTTCCGGTGAATGATATCAATAAGTTGTCAACTAAGAAAACGTATTACATAATTCCACTTATATATTATCCGTTAATCAATTTTCAATATATTTTATAGGAACCGAGCTAATTGAGCTCAAAGTGTACGTAAAGTGTGGGCTTTTAGATTCCAAAATTTTAAAAATTCTAATATTATTTCTTGACAAAACACTGACGCATTTTTCGTACATTTCAACACCACCACAACACTTTTTCTCATTATTGTCAGTTTCCAATAGACCAAAAATTTTCCCAAAATTTCCATATTCATACATTAATGGATTTTTGGCGTCTATTTTCTACATATACACTTTTCGTTTGGCTACACTGTTTTACACTCTGCCAGATTTAATTTTCAGCGATTGCTTTTGAAAACCTGTGTCAGATTTCCCTATTTTTTAAACAATTGCTTGAGGCCACGCCCTTTTTCTCGCATTACTTGGGCTATGTGGGAAAAGGGGCGTGGCCTCCTCACTGTTGCGAAAGAACGCCTGTGGGGAGGGTGGCTCGCATTTGTAATGATTCATGATCAGAATCTGGTCGTTTGAAAAACCACTTAACCATTGTTCAAGTCGATATGTATTTCCACACAAAG</canonical>
            <polymorphic>CCCCCATCATTTCTCTTCGATTGTTTTACAATTTAAATTTTCTCTGCGTCTCTCTATCTCTGTTTGCCTGCTAAGAATGAGATGGGTGTATGAAAAATATGATTGTCCTGGTGTGAATCATTTTTTCTTGTCACTTTTCTTTCTCGGTCAAATGTTCTGACCACTTTTATCAGCTCTTTTTGTTGTTTTTTCAGAGAACAGGATCTTTGGACTTTTGTAGGAAAATCGCCGAAAATCGGGGGTTACGGTAGTTTTCGTTTTGAGCCTTCTAAAGTTTCGGAAATTGAAATTTCGATCAGGTTTTAGGGATTTTCAATTTTAACGATTCCAAAAACCACAGAATGTCTAGTCACCCTATACCATCACTTTGAGCTCAATTAGCTCGGTTCCGGTGAATGATATCAATAAGTTGTCAACTAAGAAAACGTATTACATAATTCCACTTATATATTATCCGTTAATCAATTTTCAATATATTTTATAGGAACCGAGCTAATTGMGCTCAAAGTGTACGTAAAGTGTGGGCTTTTAGATTCCAAAATTTTAAAAATTCTAATATTATTTCTTGACAAAACACTGACGCATTTTTCGTACATTTCAACACCACCACAACACTTTTTCTCATTATTGTCAGTTTCCAATAGACCAAAAATTTTCCCAAAATTTCCATATTCATACATTAATGGATTTTTGGCGTCTATTTTCTACATATACACTTTTCGTTTGGCTACACTGTTTTACACTCTGCCAGATTTAATTTTCAGCGATTGCTTTTGAAAACCTGTGTCAGATTTCCCTATTTTTTAAACAATTGCTTGAGGCCACGCCCTTTTTCTCGCATTACTTGGGCTATGTGGGAAAAGGGGCGTGGCCTCCTCACTGTTGCGAAAGAACGCCTGTGGGGAGGGTGGCTCGCATTTGTAATGATTCATGATCAGAATCTGGTCGTTTGAAAAACCACTTAACCATTGTTCAAGTCGATATGTATTTCCACACAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>499 199 173 111 9 9</canonical_bands>
                <polymorphic_bands>508 199 173 111 9</polymorphic_bands>
            </assay>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>497 374 129</canonical_bands>
                <polymorphic_bands>626 374</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>497 374 129</canonical_bands>
                <polymorphic_bands>626 374</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>497 374 129</canonical_bands>
                <polymorphic_bands>626 374</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>202 173 111 108 94 91 89 40 28 24 22 9 9</canonical_bands>
                <polymorphic_bands>202 173 111 108 94 91 89 40 33 28 22 9</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>499 372 129</canonical_bands>
                <polymorphic_bands>628 372</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACCACAGAATGTCTAGTCACC</pcr_primer_p1>
		<pcr_primer_p2>GTCAGTGTTTTGTCAAGAAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACCACAGAATGTCTAGTCACCCTATACCATCACTTTGAGCTCAATTAGCTCGGTTCCGGTGAATGATATCAATAAGTTGTCAACTAAGAAAACGTATTACATAATTCCACTTATATATTATCCGTTAATCAATTTTCAATATATTTTATAGGAACCGAGCTAATTGAGCTCAAAGTGTACGTAAAGTGTGGGCTTTTAGATTCCAAAATTTTAAAAATTCTAATATTATTTCTTGACAAAACACTGAC</canonical_amplicon>
		<polymorphic_amplicon>AACCACAGAATGTCTAGTCACCCTATACCATCACTTTGAGCTCAATTAGCTCGGTTCCGGTGAATGATATCAATAAGTTGTCAACTAAGAAAACGTATTACATAATTCCACTTATATATTATCCGTTAATCAATTTTCAATATATTTTATAGGAACCGAGCTAATTGMGCTCAAAGTGTACGTAAAGTGTGGGCTTTTAGATTCCAAAATTTTAAAAATTCTAATATTATTTCTTGACAAAACACTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36260</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>209269</contig_pos>
        <strand>+</strand>
        <context>attagttgac[A/G]catttttkat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAACTGATAAATCATTTATCAAAATGTCACAAACATTTTATTAGTTGAC</left_flank>
        <right_flank>CATTTTTGATATCTAGCATAGTAATTGAGATAATTTAGCTCAAGCTTGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCAAGCTCAACAAGACATCTTCCCCGTTCCTAGGTCATCAGAAGAGCAAGCGCAGATTGAGAAGGAGGGTTCGGAGATAGCGAGAGGTCTTCTATTGGCCAGTCTTCAAACTTCGATGGATACTACTGTTGGGGCGGAGGACAGCTCAAAGGATGGTGGGGATCGAACAAAGGAGTCAGCGATCGGAAAGGAAGTGTCGGAGCCAGAGACGTTAGAAGCTCCAGTTATTCAATCACAGAAACGAGTCCTTAGGAAGAGGAAATCGGGAGCAGAGTTGATTTCTTCAATCGATAACATATCCGGTAAGTTGAAGCTCTAGTTTTGTTTACAATTAGTATACTCTGAGATTTTCAGGCGAATTGAAACAATTTAGACTATTTTTAAGAGATCCAAAGTTATAACTTTGACCTAAATTTTCTCAGTTGTTGTAAAAGATATCAAAAAGTTGCCAACTGATAAATCATTTATCAAAATGTCACAAACATTTTATTAGTTGACACATTTTTGATATCTAGCATAGTAATTGAGATAATTTAGCTCAAGCTTGGGTGCCCGTCTATTAAAGGTTTTAAGGTATTTTTGCCCGATACTGTATGATCAAATCAATTCCTAATTATTTGAACAATCGAGACCCAAACCAATGAATATTTTATTTCAGACGAATCCACACCATCCGGACACACTGAAAATCCTTCCACGACCATCCAGCCACAACCAACCACTCGTCAAGCAGAACGTTCGAAAATCCCACGAAAATCAAGACAAGACCACCCGCCGAGCGAATATCTAGAAACCGAACTAATGATAAAAGGATATATGAGAGAGGATAACCGAAACGCTTCTAGATCCGGTAGAAAGAAAATCCAAGAGTCTGAGGAGCCTATTGTCTCGGTAGACTGCGGTAAAGTGATAGACGAGATGGTGGAGAGAGTGATGAAGGGGAAAATTGAGGATATTGTCATGCCTCCAGCCAAAAGAAGAAGAAGATCCATGGCAGGA</canonical>
            <polymorphic>CTCAAGCTCAACAAGACATCTTCCCCGTTCCTAGGTCATCAGAAGAGCAAGCGCAGATTGAGAAGGAGGGTTCGGAGATAGCGAGAGGTCTTCTATTGGCCAGTCTTCAAACTTCGATGGATACTACTGTTGGGGCGGAGGACAGCTCAAAGGATGGTGGGGATCGAACAAAGGAGTCAGCGATCGGAAAGGAAGTGTCGGAGCCAGAGACGTTAGAAGCTCCAGTTATTCAATCACAGAAACGAGTCCTTAGGAAGAGGAAATCGGGAGCAGAGTTGATTTCTTCAATCGATAACATATCCGGTAAGTTGAAGCTCTAGTTTTGTTTACAATTAGTATACTCTGAGATTTTCAGGCGAATTGAAACAATTTAGACTATTTTTAAGAGATCCAAAGTTATAACTTTGACCTAAATTTTCTCAGTTGTTGTAAAAGATATCAAAAAGTTGCCAACTGATAAATCATTTATCAAAATGTCACAAACATTTTATTAGTTGACRCATTTTTGATATCTAGCATAGTAATTGAGATAATTTAGCTCAAGCTTGGGTGCCCGTCTATTAAAGGTTTTAAGGTATTTTTGCCCGATACTGTATGATCAAATCAATTCCTAATTATTTGAACAATCGAGACCCAAACCAATGAATATTTTATTTCAGACGAATCCACACCATCCGGACACACTGAAAATCCTTCCACGACCATCCAGCCACAACCAACCACTCGTCAAGCAGAACGTTCGAAAATCCCACGAAAATCAAGACAAGACCACCCGCCGAGCGAATATCTAGAAACCGAACTAATGATAAAAGGATATATGAGAGAGGATAACCGAAACGCTTCTAGATCCGGTAGAAAGAAAATCCAAGAGTCTGAGGAGCCTATTGTCTCGGTAGACTGCGGTAAAGTGATAGACGAGATGGTGGAGAGAGTGATGAAGGGGAAAATTGAGGATATTGTCATGCCTCCAGCCAAAAGAAGAAGAAGATCCATGGCAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>243 159 139 116 66 52 39 38 29 21 20 15 15 14 11 10 9 2 2</canonical_bands>
                <polymorphic_bands>243 159 139 116 73 66 39 38 29 20 15 15 14 11 10 9 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTCAATCGATAACATATCC</pcr_primer_p1>
		<pcr_primer_p2>CATACAGTATCGGGCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>318</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTCAATCGATAACATATCCGGTAAGTTGAAGCTCTAGTTTTGTTTACAATTAGTATACTCTGAGATTTTCAGGCGAATTGAAACAATTTAGACTATTTTTAAGAGATCCAAAGTTATAACTTTGACCTAAATTTTCTCAGTTGTTGTAAAAGATATCAAAAAGTTGCCAACTGATAAATCATTTATCAAAATGTCACAAACATTTTATTAGTTGACACATTTTTGATATCTAGCATAGTAATTGAGATAATTTAGCTCAAGCTTGGGTGCCCGTCTATTAAAGGTTTTAAGGTATTTTTGCCCGATACTGTATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTCAATCGATAACATATCCGGTAAGTTGAAGCTCTAGTTTTGTTTACAATTAGTATACTCTGAGATTTTCAGGCGAATTGAAACAATTTAGACTATTTTTAAGAGATCCAAAGTTATAACTTTGACCTAAATTTTCTCAGTTGTTGTAAAAGATATCAAAAAGTTGCCAACTGATAAATCATTTATCAAAATGTCACAAACATTTTATTAGTTGACRCATTTTTGATATCTAGCATAGTAATTGAGATAATTTAGCTCAAGCTTGGGTGCCCGTCTATTAAAGGTTTTAAGGTATTTTTGCCCGATACTGTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36261</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>209277</contig_pos>
        <strand></strand>
        <context>acrcattttt[G/T]atatctarca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAAATCATTTATCAAAATGTCACAAACATTTTATTAGTTGACACATTTTT</left_flank>
        <right_flank>ATATCTAGCATAGTAATTGAGATAATTTAGCTCAAGCTTGGGTGCCCGTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACAAGACATCTTCCCCGTTCCTAGGTCATCAGAAGAGCAAGCGCAGATTGAGAAGGAGGGTTCGGAGATAGCGAGAGGTCTTCTATTGGCCAGTCTTCAAACTTCGATGGATACTACTGTTGGGGCGGAGGACAGCTCAAAGGATGGTGGGGATCGAACAAAGGAGTCAGCGATCGGAAAGGAAGTGTCGGAGCCAGAGACGTTAGAAGCTCCAGTTATTCAATCACAGAAACGAGTCCTTAGGAAGAGGAAATCGGGAGCAGAGTTGATTTCTTCAATCGATAACATATCCGGTAAGTTGAAGCTCTAGTTTTGTTTACAATTAGTATACTCTGAGATTTTCAGGCGAATTGAAACAATTTAGACTATTTTTAAGAGATCCAAAGTTATAACTTTGACCTAAATTTTCTCAGTTGTTGTAAAAGATATCAAAAAGTTGCCAACTGATAAATCATTTATCAAAATGTCACAAACATTTTATTAGTTGACACATTTTTGATATCTAGCATAGTAATTGAGATAATTTAGCTCAAGCTTGGGTGCCCGTCTATTAAAGGTTTTAAGGTATTTTTGCCCGATACTGTATGATCAAATCAATTCCTAATTATTTGAACAATCGAGACCCAAACCAATGAATATTTTATTTCAGACGAATCCACACCATCCGGACACACTGAAAATCCTTCCACGACCATCCAGCCACAACCAACCACTCGTCAAGCAGAACGTTCGAAAATCCCACGAAAATCAAGACAAGACCACCCGCCGAGCGAATATCTAGAAACCGAACTAATGATAAAAGGATATATGAGAGAGGATAACCGAAACGCTTCTAGATCCGGTAGAAAGAAAATCCAAGAGTCTGAGGAGCCTATTGTCTCGGTAGACTGCGGTAAAGTGATAGACGAGATGGTGGAGAGAGTGATGAAGGGGAAAATTGAGGATATTGTCATGCCTCCAGCCAAAAGAAGAAGAAGATCCATGGCAGGATCGACGGC</canonical>
            <polymorphic>CAACAAGACATCTTCCCCGTTCCTAGGTCATCAGAAGAGCAAGCGCAGATTGAGAAGGAGGGTTCGGAGATAGCGAGAGGTCTTCTATTGGCCAGTCTTCAAACTTCGATGGATACTACTGTTGGGGCGGAGGACAGCTCAAAGGATGGTGGGGATCGAACAAAGGAGTCAGCGATCGGAAAGGAAGTGTCGGAGCCAGAGACGTTAGAAGCTCCAGTTATTCAATCACAGAAACGAGTCCTTAGGAAGAGGAAATCGGGAGCAGAGTTGATTTCTTCAATCGATAACATATCCGGTAAGTTGAAGCTCTAGTTTTGTTTACAATTAGTATACTCTGAGATTTTCAGGCGAATTGAAACAATTTAGACTATTTTTAAGAGATCCAAAGTTATAACTTTGACCTAAATTTTCTCAGTTGTTGTAAAAGATATCAAAAAGTTGCCAACTGATAAATCATTTATCAAAATGTCACAAACATTTTATTAGTTGACACATTTTTKATATCTAGCATAGTAATTGAGATAATTTAGCTCAAGCTTGGGTGCCCGTCTATTAAAGGTTTTAAGGTATTTTTGCCCGATACTGTATGATCAAATCAATTCCTAATTATTTGAACAATCGAGACCCAAACCAATGAATATTTTATTTCAGACGAATCCACACCATCCGGACACACTGAAAATCCTTCCACGACCATCCAGCCACAACCAACCACTCGTCAAGCAGAACGTTCGAAAATCCCACGAAAATCAAGACAAGACCACCCGCCGAGCGAATATCTAGAAACCGAACTAATGATAAAAGGATATATGAGAGAGGATAACCGAAACGCTTCTAGATCCGGTAGAAAGAAAATCCAAGAGTCTGAGGAGCCTATTGTCTCGGTAGACTGCGGTAAAGTGATAGACGAGATGGTGGAGAGAGTGATGAAGGGGAAAATTGAGGATATTGTCATGCCTCCAGCCAAAAGAAGAAGAAGATCCATGGCAGGATCGACGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>498 429 73</canonical_bands>
                <polymorphic_bands>571 429</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTCAATCGATAACATATCC</pcr_primer_p1>
		<pcr_primer_p2>CATACAGTATCGGGCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>318</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTCAATCGATAACATATCCGGTAAGTTGAAGCTCTAGTTTTGTTTACAATTAGTATACTCTGAGATTTTCAGGCGAATTGAAACAATTTAGACTATTTTTAAGAGATCCAAAGTTATAACTTTGACCTAAATTTTCTCAGTTGTTGTAAAAGATATCAAAAAGTTGCCAACTGATAAATCATTTATCAAAATGTCACAAACATTTTATTAGTTGACACATTTTTGATATCTAGCATAGTAATTGAGATAATTTAGCTCAAGCTTGGGTGCCCGTCTATTAAAGGTTTTAAGGTATTTTTGCCCGATACTGTATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTCAATCGATAACATATCCGGTAAGTTGAAGCTCTAGTTTTGTTTACAATTAGTATACTCTGAGATTTTCAGGCGAATTGAAACAATTTAGACTATTTTTAAGAGATCCAAAGTTATAACTTTGACCTAAATTTTCTCAGTTGTTGTAAAAGATATCAAAAAGTTGCCAACTGATAAATCATTTATCAAAATGTCACAAACATTTTATTAGTTGACACATTTTTKATATCTAGCATAGTAATTGAGATAATTTAGCTCAAGCTTGGGTGCCCGTCTATTAAAGGTTTTAAGGTATTTTTGCCCGATACTGTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36262</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>209285</contig_pos>
        <strand></strand>
        <context>ttkatatcta[G/A]catagtaatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTATCAAAATGTCACAAACATTTTATTAGTTGACACATTTTTGATATCTA</left_flank>
        <right_flank>CATAGTAATTGAGATAATTTAGCTCAAGCTTGGGTGCCCGTCTATTAAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCTTCCCCGTTCCTAGGTCATCAGAAGAGCAAGCGCAGATTGAGAAGGAGGGTTCGGAGATAGCGAGAGGTCTTCTATTGGCCAGTCTTCAAACTTCGATGGATACTACTGTTGGGGCGGAGGACAGCTCAAAGGATGGTGGGGATCGAACAAAGGAGTCAGCGATCGGAAAGGAAGTGTCGGAGCCAGAGACGTTAGAAGCTCCAGTTATTCAATCACAGAAACGAGTCCTTAGGAAGAGGAAATCGGGAGCAGAGTTGATTTCTTCAATCGATAACATATCCGGTAAGTTGAAGCTCTAGTTTTGTTTACAATTAGTATACTCTGAGATTTTCAGGCGAATTGAAACAATTTAGACTATTTTTAAGAGATCCAAAGTTATAACTTTGACCTAAATTTTCTCAGTTGTTGTAAAAGATATCAAAAAGTTGCCAACTGATAAATCATTTATCAAAATGTCACAAACATTTTATTAGTTGACACATTTTTGATATCTAGCATAGTAATTGAGATAATTTAGCTCAAGCTTGGGTGCCCGTCTATTAAAGGTTTTAAGGTATTTTTGCCCGATACTGTATGATCAAATCAATTCCTAATTATTTGAACAATCGAGACCCAAACCAATGAATATTTTATTTCAGACGAATCCACACCATCCGGACACACTGAAAATCCTTCCACGACCATCCAGCCACAACCAACCACTCGTCAAGCAGAACGTTCGAAAATCCCACGAAAATCAAGACAAGACCACCCGCCGAGCGAATATCTAGAAACCGAACTAATGATAAAAGGATATATGAGAGAGGATAACCGAAACGCTTCTAGATCCGGTAGAAAGAAAATCCAAGAGTCTGAGGAGCCTATTGTCTCGGTAGACTGCGGTAAAGTGATAGACGAGATGGTGGAGAGAGTGATGAAGGGGAAAATTGAGGATATTGTCATGCCTCCAGCCAAAAGAAGAAGAAGATCCATGGCAGGATCGACGGCTCAAGAAT</canonical>
            <polymorphic>CATCTTCCCCGTTCCTAGGTCATCAGAAGAGCAAGCGCAGATTGAGAAGGAGGGTTCGGAGATAGCGAGAGGTCTTCTATTGGCCAGTCTTCAAACTTCGATGGATACTACTGTTGGGGCGGAGGACAGCTCAAAGGATGGTGGGGATCGAACAAAGGAGTCAGCGATCGGAAAGGAAGTGTCGGAGCCAGAGACGTTAGAAGCTCCAGTTATTCAATCACAGAAACGAGTCCTTAGGAAGAGGAAATCGGGAGCAGAGTTGATTTCTTCAATCGATAACATATCCGGTAAGTTGAAGCTCTAGTTTTGTTTACAATTAGTATACTCTGAGATTTTCAGGCGAATTGAAACAATTTAGACTATTTTTAAGAGATCCAAAGTTATAACTTTGACCTAAATTTTCTCAGTTGTTGTAAAAGATATCAAAAAGTTGCCAACTGATAAATCATTTATCAAAATGTCACAAACATTTTATTAGTTGACACATTTTTGATATCTARCATAGTAATTGAGATAATTTAGCTCAAGCTTGGGTGCCCGTCTATTAAAGGTTTTAAGGTATTTTTGCCCGATACTGTATGATCAAATCAATTCCTAATTATTTGAACAATCGAGACCCAAACCAATGAATATTTTATTTCAGACGAATCCACACCATCCGGACACACTGAAAATCCTTCCACGACCATCCAGCCACAACCAACCACTCGTCAAGCAGAACGTTCGAAAATCCCACGAAAATCAAGACAAGACCACCCGCCGAGCGAATATCTAGAAACCGAACTAATGATAAAAGGATATATGAGAGAGGATAACCGAAACGCTTCTAGATCCGGTAGAAAGAAAATCCAAGAGTCTGAGGAGCCTATTGTCTCGGTAGACTGCGGTAAAGTGATAGACGAGATGGTGGAGAGAGTGATGAAGGGGAAAATTGAGGATATTGTCATGCCTCCAGCCAAAAGAAGAAGAAGATCCATGGCAGGATCGACGGCTCAAGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>286 275 196 173 55 15</canonical_bands>
                <polymorphic_bands>471 286 173 55 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTCAATCGATAACATATCC</pcr_primer_p1>
		<pcr_primer_p2>CATACAGTATCGGGCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>318</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTCAATCGATAACATATCCGGTAAGTTGAAGCTCTAGTTTTGTTTACAATTAGTATACTCTGAGATTTTCAGGCGAATTGAAACAATTTAGACTATTTTTAAGAGATCCAAAGTTATAACTTTGACCTAAATTTTCTCAGTTGTTGTAAAAGATATCAAAAAGTTGCCAACTGATAAATCATTTATCAAAATGTCACAAACATTTTATTAGTTGACACATTTTTGATATCTAGCATAGTAATTGAGATAATTTAGCTCAAGCTTGGGTGCCCGTCTATTAAAGGTTTTAAGGTATTTTTGCCCGATACTGTATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTCAATCGATAACATATCCGGTAAGTTGAAGCTCTAGTTTTGTTTACAATTAGTATACTCTGAGATTTTCAGGCGAATTGAAACAATTTAGACTATTTTTAAGAGATCCAAAGTTATAACTTTGACCTAAATTTTCTCAGTTGTTGTAAAAGATATCAAAAAGTTGCCAACTGATAAATCATTTATCAAAATGTCACAAACATTTTATTAGTTGACACATTTTTGATATCTARCATAGTAATTGAGATAATTTAGCTCAAGCTTGGGTGCCCGTCTATTAAAGGTTTTAAGGTATTTTTGCCCGATACTGTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36263</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>209677</contig_pos>
        <strand>+</strand>
        <context>CTGCGGTAAA[A/G]TGATAGACGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAAATCCAAGAGTCTGAGGAGCCTATTGTCTCGGTAGACTGCGGTAAA</left_flank>
        <right_flank>TGATAGACGAGATGGTGGAGAGAGTGATGAAGGGGAAAATTGAGGATATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTAAATTTTCTCAGTTGTTGTAAAAGATATCAAAAAGTTGCCAACTGATAAATCATTTATCAAAATGTCACAAACATTTTATTAGTTGACACATTTTTGATATCTAGCATAGTAATTGAGATAATTTAGCTCAAGCTTGGGTGCCCGTCTATTAAAGGTTTTAAGGTATTTTTGCCCGATACTGTATGATCAAATCAATTCCTAATTATTTGAACAATCGAGACCCAAACCAATGAATATTTTATTTCAGACGAATCCACACCATCCGGACACACTGAAAATCCTTCCACGACCATCCAGCCACAACCAACCACTCGTCAAGCAGAACGTTCGAAAATCCCACGAAAATCAAGACAAGACCACCCGCCGAGCGAATATCTAGAAACCGAACTAATGATAAAAGGATATATGAGAGAGGATAACCGAAACGCTTCTAGATCCGGTAGAAAGAAAATCCAAGAGTCTGAGGAGCCTATTGTCTCGGTAGACTGCGGTAAAGTGATAGACGAGATGGTGGAGAGAGTGATGAAGGGGAAAATTGAGGATATTGTCATGCCTCCAGCCAAAAGAAGAAGAAGATCCATGGCAGGATCGACGGCTCAAGAATCCGAAGGTACGAAGAAGAAAGTTAGACGAGAAAAGAAGACGACTTCGGATGATGCGGACGCTTCTGATAATTCTAACCGTATTCCGGTTGATGATGTTTCCACTCAAAAGCATATGAAGTCAAAGTCTGTGAATTCTGTTTTAGAAGATACTACCGTCACGGGAGAGTCTAGACAAACTTCAAGTGGTGAAGCTGCTGCCCAAGCTGAGGAGACTTCTCCTCAAGGAAACCAAGTTGTTGTAGATGACATTATGAGAGAGTCGAGTCGATCTGAAGATGCTGGAACTGCCCATGCCGAGGAAGCTGCTCCTGAAGAAATTCAAGTTGCTGCTTCAAAAGTGGACAATTTCGATGATGTTCCTTCAAATGGTGTTGGTGCTTCGGAGAGACCG</canonical>
            <polymorphic>CCTAAATTTTCTCAGTTGTTGTAAAAGATATCAAAAAGTTGCCAACTGATAAATCATTTATCAAAATGTCACAAACATTTTATTAGTTGACACATTTTTGATATCTAGCATAGTAATTGAGATAATTTAGCTCAAGCTTGGGTGCCCGTCTATTAAAGGTTTTAAGGTATTTTTGCCCGATACTGTATGATCAAATCAATTCCTAATTATTTGAACAATCGAGACCCAAACCAATGAATATTTTATTTCAGACGAATCCACACCATCCGGACACACTGAAAATCCTTCCACGACCATCCAGCCACAACCAACCACTCGTCAAGCAGAACGTTCGAAAATCCCACGAAAATCAAGACAAGACCACCCGCCGAGCGAATATCTAGAAACCGAACTAATGATAAAAGGATATATGAGAGAGGATAACCGAAACGCTTCTAGATCCGGTAGAAAGAAAATCCAAGAGTCTGAGGAGCCTATTGTCTCGGTAGACTGCGGTAAARTGATAGACGAGATGGTGGAGAGAGTGATGAAGGGGAAAATTGAGGATATTGTCATGCCTCCAGCCAAAAGAAGAAGAAGATCCATGGCAGGATCGACGGCTCAAGAATCCGAAGGTACGAAGAAGAAAGTTAGACGAGAAAAGAAGACGACTTCGGATGATGCGGACGCTTCTGATAATTCTAACCGTATTCCGGTTGATGATGTTTCCACTCAAAAGCATATGAAGTCAAAGTCTGTGAATTCTGTTTTAGAAGATACTACCGTCACGGGAGAGTCTAGACAAACTTCAAGTGGTGAAGCTGCTGCCCAAGCTGAGGAGACTTCTCCTCAAGGAAACCAAGTTGTTGTAGATGACATTATGAGAGAGTCGAGTCGATCTGAAGATGCTGGAACTGCCCATGCCGAGGAAGCTGCTCCTGAAGAAATTCAAGTTGCTGCTTCAAAAGTGGACAATTTCGATGATGTTCCTTCAAATGGTGTTGGTGCTTCGGAGAGACCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>184 152 139 116 71 52 31 29 29 28 27 21 20 15 15 14 14 11 10 9 6 3 2 2</canonical_bands>
                <polymorphic_bands>184 154 152 116 71 52 31 29 29 28 27 21 20 15 14 14 11 10 9 6 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTAGAAAGAAAATCCAAGAGTC</pcr_primer_p1>
		<pcr_primer_p2>GGAATACGGTTAGAATTATCAGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGTAGAAAGAAAATCCAAGAGTCTGAGGAGCCTATTGTCTCGGTAGACTGCGGTAAAGTGATAGACGAGATGGTGGAGAGAGTGATGAAGGGGAAAATTGAGGATATTGTCATGCCTCCAGCCAAAAGAAGAAGAAGATCCATGGCAGGATCGACGGCTCAAGAATCCGAAGGTACGAAGAAGAAAGTTAGACGAGAAAAGAAGACGACTTCGGATGATGCGGACGCTTCTGATAATTCTAACCGTATTCC</canonical_amplicon>
		<polymorphic_amplicon>GGTAGAAAGAAAATCCAAGAGTCTGAGGAGCCTATTGTCTCGGTAGACTGCGGTAAARTGATAGACGAGATGGTGGAGAGAGTGATGAAGGGGAAAATTGAGGATATTGTCATGCCTCCAGCCAAAAGAAGAAGAAGATCCATGGCAGGATCGACGGCTCAAGAATCCGAAGGTACGAAGAAGAAAGTTAGACGAGAAAAGAAGACGACTTCGGATGATGCGGACGCTTCTGATAATTCTAACCGTATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36264</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>217383</contig_pos>
        <strand>+</strand>
        <context>AACTAGGAGA[A/C]TAGAAGAGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTCTTTTTTAATTCTGCTGAATTTGTTATTTACGAGAGTAACTAGGAGA</left_flank>
        <right_flank>TAGAAGAGGAAAGAAGGACAGGTGCATGGTTCTTTTGGAAAATGAATTGC</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTCGTTTCTCGGAAGTGTCCCTTTAATTAGTATTAGACGATTAAGAGGATGAAGAGGAGGAGACGGAAATTAGATGATTCATCGCTGACTAGGTTGGATCCATGATTTTTAATGTGCTCTGTAGGAAATCTGGCACCCTTTTCGTATAGGTTCAGAACACTTCAAGGTGGTGTATTCGTGATTTTTCATTGTTTTATTCTGGGAAAAATTAGGCTCCGCCCCTCTTCAAGTGGTCGCAATTATGACCGCCAAAATTGAAGATTATAGGCCACCTTCAATTTTTTTTTTAAACTTCCTTATAACGCTACACAAGCCTGTTACGTTGCTTTTGAAAAAGTGAAGAGCGAAGTGAACAACCTGTAAAAAACTAGCTTCAATCGCGTCGAAGGCGCACCAGCTAGCTTGTATTCCCATAATTAGTCAATACAAAAACTAAATTCCTTGTTATTCTTTTTTAATTCTGCTGAATTTGTTATTTACGAGAGTAACTAGGAGAATAGAAGAGGAAAGAAGGACAGGTGCATGGTTCTTTTGGAAAATGAATTGCTCAATTTTGCGGAATGGACAGTCTGTGTTGGGGTCACAACACCTGTTTTGCAGCTTGCGAGAAGCGTTATTTCCTTCTACCAATTCAGATTTTCATCTTCATTTTTATCCTGAATTTGTTGAATTGGAGGACTTTTTTGAAGTCTGAAAATTCATTTCGAAAAATTGTTAAACTGATTTCTTAAATTCAAATTGAGTAGACTAGTTATTATACAGTTGCAGTCCTATTCTTCAACTTTTAGGTATATTTTTTTATGTTTTGATGTTTGAGCTTAATTATCTCGATTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACAAAATGTTTAACACCAATATTTCATCAGTTGACAGATTTGTAATACCTTTCATAGGAACCGAGATAATTGAGCTCAAGGTGCAAGTTTAGGGTGAGCTAGGGTGAGCTTCTCTAAGAGCCAACACGGTGAT</canonical>
            <polymorphic>TTTCTCGTTTCTCGGAAGTGTCCCTTTAATTAGTATTAGACGATTAAGAGGATGAAGAGGAGGAGACGGAAATTAGATGATTCATCGCTGACTAGGTTGGATCCATGATTTTTAATGTGCTCTGTAGGAAATCTGGCACCCTTTTCGTATAGGTTCAGAACACTTCAAGGTGGTGTATTCGTGATTTTTCATTGTTTTATTCTGGGAAAAATTAGGCTCCGCCCCTCTTCAAGTGGTCGCAATTATGACCGCCAAAATTGAAGATTATAGGCCACCTTCAATTTTTTTTTTAAACTTCCTTATAACGCTACACAAGCCTGTTACGTTGCTTTTGAAAAAGTGAAGAGCGAAGTGAACAACCTGTAAAAAACTAGCTTCAATCGCGTCGAAGGCGCACCAGCTAGCTTGTATTCCCATAATTAGTCAATACAAAAACTAAATTCCTTGTTATTCTTTTTTAATTCTGCTGAATTTGTTATTTACGAGAGTAACTAGGAGAMTAGAAGAGGAAAGAAGGACAGGTGCATGGTTCTTTTGGAAAATGAATTGCTCAATTTTGCGGAATGGACAGTCTGTGTTGGGGTCACAACACCTGTTTTGCAGCTTGCGAGAAGCGTTATTTCCTTCTACCAATTCAGATTTTCATCTTCATTTTTATCCTGAATTTGTTGAATTGGAGGACTTTTTTGAAGTCTGAAAATTCATTTCGAAAAATTGTTAAACTGATTTCTTAAATTCAAATTGAGTAGACTAGTTATTATACAGTTGCAGTCCTATTCTTCAACTTTTAGGTATATTTTTTTATGTTTTGATGTTTGAGCTTAATTATCTCGATTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACAAAATGTTTAACACCAATATTTCATCAGTTGACAGATTTGTAATACCTTTCATAGGAACCGAGATAATTGAGCTCAAGGTGCAAGTTTAGGGTGAGCTAGGGTGAGCTTCTCTAAGAGCCAACACGGTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCCATAATTAGTCAATACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAGGATAAAAATGAAGATGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCCCATAATTAGTCAATACAAAAACTAAATTCCTTGTTATTCTTTTTTAATTCTGCTGAATTTGTTATTTACGAGAGTAACTAGGAGAATAGAAGAGGAAAGAAGGACAGGTGCATGGTTCTTTTGGAAAATGAATTGCTCAATTTTGCGGAATGGACAGTCTGTGTTGGGGTCACAACACCTGTTTTGCAGCTTGCGAGAAGCGTTATTTCCTTCTACCAATTCAGATTTTCATCTTCATTTTTATCCTG</canonical_amplicon>
		<polymorphic_amplicon>TCCCATAATTAGTCAATACAAAAACTAAATTCCTTGTTATTCTTTTTTAATTCTGCTGAATTTGTTATTTACGAGAGTAACTAGGAGAMTAGAAGAGGAAAGAAGGACAGGTGCATGGTTCTTTTGGAAAATGAATTGCTCAATTTTGCGGAATGGACAGTCTGTGTTGGGGTCACAACACCTGTTTTGCAGCTTGCGAGAAGCGTTATTTCCTTCTACCAATTCAGATTTTCATCTTCATTTTTATCCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36265</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>217677</contig_pos>
        <strand>+</strand>
        <context>ACTTTTAGGT[A/G]TATTTTTTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGTAGACTAGTTATTATACAGTTGCAGTCCTATTCTTCAACTTTTAGGT</left_flank>
        <right_flank>TATTTTTTTATGTTTTGATGTTTGAGCTTAATTATCTCGATTTCTGTAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCCTTATAACGCTACACAAGCCTGTTACGTTGCTTTTGAAAAAGTGAAGAGCGAAGTGAACAACCTGTAAAAAACTAGCTTCAATCGCGTCGAAGGCGCACCAGCTAGCTTGTATTCCCATAATTAGTCAATACAAAAACTAAATTCCTTGTTATTCTTTTTTAATTCTGCTGAATTTGTTATTTACGAGAGTAACTAGGAGAATAGAAGAGGAAAGAAGGACAGGTGCATGGTTCTTTTGGAAAATGAATTGCTCAATTTTGCGGAATGGACAGTCTGTGTTGGGGTCACAACACCTGTTTTGCAGCTTGCGAGAAGCGTTATTTCCTTCTACCAATTCAGATTTTCATCTTCATTTTTATCCTGAATTTGTTGAATTGGAGGACTTTTTTGAAGTCTGAAAATTCATTTCGAAAAATTGTTAAACTGATTTCTTAAATTCAAATTGAGTAGACTAGTTATTATACAGTTGCAGTCCTATTCTTCAACTTTTAGGTATATTTTTTTATGTTTTGATGTTTGAGCTTAATTATCTCGATTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACAAAATGTTTAACACCAATATTTCATCAGTTGACAGATTTGTAATACCTTTCATAGGAACCGAGATAATTGAGCTCAAGGTGCAAGTTTAGGGTGAGCTAGGGTGAGCTTCTCTAAGAGCCAACACGGTGATATTCTGTTTCTTCTCCTTATTTCTACAGATGCTCTATTACTTACCTATCCCTTATTCATTTGTTCTCTCTCCCTTATCAGTGATAACCTGACCCCATACAAGTGCATTTGGATGTTAAACAATCACCTCCAATCCACACGTTCCTCCTTCTTCCTTCTTTGATATCAGAACGATAGATTCAAAAAGGAAGGAAAAAAGAGAACAAACATAGACAAAAGGGATACCAGCACAAGCACAATAGTCAAACACATATTCTTTTTTCCTTTTCAAAAGAAACCATCGTCCATCCTTTTT</canonical>
            <polymorphic>CTTCCTTATAACGCTACACAAGCCTGTTACGTTGCTTTTGAAAAAGTGAAGAGCGAAGTGAACAACCTGTAAAAAACTAGCTTCAATCGCGTCGAAGGCGCACCAGCTAGCTTGTATTCCCATAATTAGTCAATACAAAAACTAAATTCCTTGTTATTCTTTTTTAATTCTGCTGAATTTGTTATTTACGAGAGTAACTAGGAGAATAGAAGAGGAAAGAAGGACAGGTGCATGGTTCTTTTGGAAAATGAATTGCTCAATTTTGCGGAATGGACAGTCTGTGTTGGGGTCACAACACCTGTTTTGCAGCTTGCGAGAAGCGTTATTTCCTTCTACCAATTCAGATTTTCATCTTCATTTTTATCCTGAATTTGTTGAATTGGAGGACTTTTTTGAAGTCTGAAAATTCATTTCGAAAAATTGTTAAACTGATTTCTTAAATTCAAATTGAGTAGACTAGTTATTATACAGTTGCAGTCCTATTCTTCAACTTTTAGGTRTATTTTTTTATGTTTTGATGTTTGAGCTTAATTATCTCGATTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACAAAATGTTTAACACCAATATTTCATCAGTTGACAGATTTGTAATACCTTTCATAGGAACCGAGATAATTGAGCTCAAGGTGCAAGTTTAGGGTGAGCTAGGGTGAGCTTCTCTAAGAGCCAACACGGTGATATTCTGTTTCTTCTCCTTATTTCTACAGATGCTCTATTACTTACCTATCCCTTATTCATTTGTTCTCTCTCCCTTATCAGTGATAACCTGACCCCATACAAGTGCATTTGGATGTTAAACAATCACCTCCAATCCACACGTTCCTCCTTCTTCCTTCTTTGATATCAGAACGATAGATTCAAAAAGGAAGGAAAAAAGAGAACAAACATAGACAAAAGGGATACCAGCACAAGCACAATAGTCAAACACATATTCTTTTTTCCTTTTCAAAAGAAACCATCGTCCATCCTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCGAAAAATTGTTAAACTGAT</pcr_primer_p1>
		<pcr_primer_p2>TGGCTCTTAGAGAAGCTCAC</pcr_primer_p2>
		<pcr_amplicon_size>286</pcr_amplicon_size>
		<canonical_amplicon>TTTCGAAAAATTGTTAAACTGATTTCTTAAATTCAAATTGAGTAGACTAGTTATTATACAGTTGCAGTCCTATTCTTCAACTTTTAGGTATATTTTTTTATGTTTTGATGTTTGAGCTTAATTATCTCGATTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACAAAATGTTTAACACCAATATTTCATCAGTTGACAGATTTGTAATACCTTTCATAGGAACCGAGATAATTGAGCTCAAGGTGCAAGTTTAGGGTGAGCTAGGGTGAGCTTCTCTAAGAGCCA</canonical_amplicon>
		<polymorphic_amplicon>TTTCGAAAAATTGTTAAACTGATTTCTTAAATTCAAATTGAGTAGACTAGTTATTATACAGTTGCAGTCCTATTCTTCAACTTTTAGGTRTATTTTTTTATGTTTTGATGTTTGAGCTTAATTATCTCGATTTCTGTAAAAGATATCAAAAAGTGGTCAACTGACAAAATGTTTAACACCAATATTTCATCAGTTGACAGATTTGTAATACCTTTCATAGGAACCGAGATAATTGAGCTCAAGGTGCAAGTTTAGGGTGAGCTAGGGTGAGCTTCTCTAAGAGCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36266</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>219316</contig_pos>
        <strand></strand>
        <context>TAGCTAAACA[A/G]TCtaatagaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGCATAACTACCAAGATAATTGAGCTCAAAGTGCGCATATAGCTAAACA</left_flank>
        <right_flank>TCTAATAGAACGCCACTCGAATCGTCAAATTTGAGTCCATGTATCTCATT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGAGGGTTACGGTATCCGTTCTTGAACGATTTCAGGGTTTTTCTAGGGAACACGAAAGGTTAATACAAGATTTTTGGGATTACGGTACATATTTTTAGGGCATAAAAAGTTTAAACTCCTAGTTTTCCAATTTTTGATAAAAAAATTATTAGGCTCTAATTTTATCAAAGTACTAAGTTAATAACAACATTCTGTAAATTTTTAGTTGAAATGGCGGAATAAAAAAAACGAATTTCCCAAAAAAAAAACTTCCTGGAGGATTTGAACTTGTGGGCCCACTGTTGGAGGTGCCGTGTCGCTACCGGTTGAGCTACTTTGGCTTTAGAAGCCCACCTCATTTGAGCTCAATTATTTCGATTCCTATGAGAGATATCAAAAATTAGTCAACTGAAAAAATAATGGTGATGTTATGATAAAAATGTTATTAGTTGACAAATTTTTGATATCTTGCATAACTACCAAGATAATTGAGCTCAAAGTGCGCATATAGCTAAACAATCTAATAGAACGCCACTCGAATCGTCAAATTTGAGTCCATGTATCTCATTTTCTGTGAGAGATACCAAAAAATGGTTAACTAATAAAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATAAGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTTAATTTTCCGAGGAAAAAAACCACCTGCCATTCTCTATATCCCTTTATCTAATCAAATAAATATCCGCATAGTCACTTGTATCCCCCCCCCCCCCCCCCCCCCAATTTAATCTAATCTAATCACCTTTCCCTCCATATTTTTTCCCATGACATGACAATTGACATTTTTCATCCCAATACATTTTTATGTTTTTGCTGATTGGAAATTGTTTGGAAATTTGATATTTTGTCAGGAAATGAGCATCGGAGTA</canonical>
            <polymorphic>CTAGAGGGTTACGGTATCCGTTCTTGAACGATTTCAGGGTTTTTCTAGGGAACACGAAAGGTTAATACAAGATTTTTGGGATTACGGTACATATTTTTAGGGCATAAAAAGTTTAAACTCCTAGTTTTCCAATTTTTGATAAAAAAATTATTAGGCTCTAATTTTATCAAAGTACTAAGTTAATAACAACATTCTGTAAATTTTTAGTTGAAATGGCGGAATAAAAAAAACGAATTTCCCAAAAAAAAAACTTCCTGGAGGATTTGAACTTGTGGGCCCACTGTTGGAGGTGCCGTGTCGCTACCGGTTGAGCTACTTTGGCTTTAGAAGCCCACCTCATTTGAGCTCAATTATTTCGATTCCTATGAGAGATATCAAAAATTAGTCAACTGAAAAAATAATGGTGATGTTATGATAAAAATGTTATTAGTTGACAAATTTTTGATATCTTGCATAACTACCAAGATAATTGAGCTCAAAGTGCGCATATAGCTAAACARTCTAATAGAACGCCACTCGAATCGTCAAATTTGAGTCCATGTATCTCATTTTCTGTGAGAGATACCAAAAAATGGTTAACTAATAAAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATAAGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTTAATTTTCCGAGGAAAAAAACCACCTGCCATTCTCTATATCCCTTTATCTAATCAAATAAATATCCGCATAGTCACTTGTATCCCCCCCCCCCCCCCCCCCCCAATTTAATCTAATCTAATCACCTTTCCCTCCATATTTTTTCCCATGACATGACAATTGACATTTTTCATCCCAATACATTTTTATGTTTTTGCTGATTGGAAATTGTTTGGAAATTTGATATTTTGTCAGGAAATGAGCATCGGAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTTGAAATGGCGGAATAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGGAGATTTTTCGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>546</pcr_amplicon_size>
		<canonical_amplicon>TAGTTGAAATGGCGGAATAAAAAAAACGAATTTCCCAAAAAAAAAACTTCCTGGAGGATTTGAACTTGTGGGCCCACTGTTGGAGGTGCCGTGTCGCTACCGGTTGAGCTACTTTGGCTTTAGAAGCCCACCTCATTTGAGCTCAATTATTTCGATTCCTATGAGAGATATCAAAAATTAGTCAACTGAAAAAATAATGGTGATGTTATGATAAAAATGTTATTAGTTGACAAATTTTTGATATCTTGCATAACTACCAAGATAATTGAGCTCAAAGTGCGCATATAGCTAAACAATCTAATAGAACGCCACTCGAATCGTCAAATTTGAGTCCATGTATCTCATTTTCTGTGAGAGATACCAAAAAATGGTTAACTAATAAAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATAAGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTT</canonical_amplicon>
		<polymorphic_amplicon>TAGTTGAAATGGCGGAATAAAAAAAACGAATTTCCCAAAAAAAAAACTTCCTGGAGGATTTGAACTTGTGGGCCCACTGTTGGAGGTGCCGTGTCGCTACCGGTTGAGCTACTTTGGCTTTAGAAGCCCACCTCATTTGAGCTCAATTATTTCGATTCCTATGAGAGATATCAAAAATTAGTCAACTGAAAAAATAATGGTGATGTTATGATAAAAATGTTATTAGTTGACAAATTTTTGATATCTTGCATAACTACCAAGATAATTGAGCTCAAAGTGCGCATATAGCTAAACARTCTAATAGAACGCCACTCGAATCGTCAAATTTGAGTCCATGTATCTCATTTTCTGTGAGAGATACCAAAAAATGGTTAACTAATAAAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATAAGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36267</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>219352</contig_pos>
        <strand></strand>
        <context>caaatttgag[T/C]ccatgtatct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CATATAGCTAAACAATCTAATAGAACGCCACTCGAATCGTCAAATTTGAG</left_flank>
        <right_flank>CCATGTATCTCATTTTCTGTGAGAGATACCAAAAAATGGTTAACTAATAA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGTTTTTCTAGGGAACACGAAAGGTTAATACAAGATTTTTGGGATTACGGTACATATTTTTAGGGCATAAAAAGTTTAAACTCCTAGTTTTCCAATTTTTGATAAAAAAATTATTAGGCTCTAATTTTATCAAAGTACTAAGTTAATAACAACATTCTGTAAATTTTTAGTTGAAATGGCGGAATAAAAAAAACGAATTTCCCAAAAAAAAAACTTCCTGGAGGATTTGAACTTGTGGGCCCACTGTTGGAGGTGCCGTGTCGCTACCGGTTGAGCTACTTTGGCTTTAGAAGCCCACCTCATTTGAGCTCAATTATTTCGATTCCTATGAGAGATATCAAAAATTAGTCAACTGAAAAAATAATGGTGATGTTATGATAAAAATGTTATTAGTTGACAAATTTTTGATATCTTGCATAACTACCAAGATAATTGAGCTCAAAGTGCGCATATAGCTAAACAATCTAATAGAACGCCACTCGAATCGTCAAATTTGAGTCCATGTATCTCATTTTCTGTGAGAGATACCAAAAAATGGTTAACTAATAAAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATAAGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTTAATTTTCCGAGGAAAAAAACCACCTGCCATTCTCTATATCCCTTTATCTAATCAAATAAATATCCGCATAGTCACTTGTATCCCCCCCCCCCCCCCCCCCCCAATTTAATCTAATCTAATCACCTTTCCCTCCATATTTTTTCCCATGACATGACAATTGACATTTTTCATCCCAATACATTTTTATGTTTTTGCTGATTGGAAATTGTTTGGAAATTTGATATTTTGTCAGGAAATGAGCATCGGAGTAAACAATTTTTTGTAGAGCATGTCATAACTTTTTCAT</canonical>
            <polymorphic>GGGTTTTTCTAGGGAACACGAAAGGTTAATACAAGATTTTTGGGATTACGGTACATATTTTTAGGGCATAAAAAGTTTAAACTCCTAGTTTTCCAATTTTTGATAAAAAAATTATTAGGCTCTAATTTTATCAAAGTACTAAGTTAATAACAACATTCTGTAAATTTTTAGTTGAAATGGCGGAATAAAAAAAACGAATTTCCCAAAAAAAAAACTTCCTGGAGGATTTGAACTTGTGGGCCCACTGTTGGAGGTGCCGTGTCGCTACCGGTTGAGCTACTTTGGCTTTAGAAGCCCACCTCATTTGAGCTCAATTATTTCGATTCCTATGAGAGATATCAAAAATTAGTCAACTGAAAAAATAATGGTGATGTTATGATAAAAATGTTATTAGTTGACAAATTTTTGATATCTTGCATAACTACCAAGATAATTGAGCTCAAAGTGCGCATATAGCTAAACAATCTAATAGAACGCCACTCGAATCGTCAAATTTGAGYCCATGTATCTCATTTTCTGTGAGAGATACCAAAAAATGGTTAACTAATAAAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATAAGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTTAATTTTCCGAGGAAAAAAACCACCTGCCATTCTCTATATCCCTTTATCTAATCAAATAAATATCCGCATAGTCACTTGTATCCCCCCCCCCCCCCCCCCCCCAATTTAATCTAATCTAATCACCTTTCCCTCCATATTTTTTCCCATGACATGACAATTGACATTTTTCATCCCAATACATTTTTATGTTTTTGCTGATTGGAAATTGTTTGGAAATTTGATATTTTGTCAGGAAATGAGCATCGGAGTAAACAATTTTTTGTAGAGCATGTCATAACTTTTTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>503 322 161 14</canonical_bands>
                <polymorphic_bands>517 322 161</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGTTGAAATGGCGGAATAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGGAGATTTTTCGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>546</pcr_amplicon_size>
		<canonical_amplicon>TAGTTGAAATGGCGGAATAAAAAAAACGAATTTCCCAAAAAAAAAACTTCCTGGAGGATTTGAACTTGTGGGCCCACTGTTGGAGGTGCCGTGTCGCTACCGGTTGAGCTACTTTGGCTTTAGAAGCCCACCTCATTTGAGCTCAATTATTTCGATTCCTATGAGAGATATCAAAAATTAGTCAACTGAAAAAATAATGGTGATGTTATGATAAAAATGTTATTAGTTGACAAATTTTTGATATCTTGCATAACTACCAAGATAATTGAGCTCAAAGTGCGCATATAGCTAAACAATCTAATAGAACGCCACTCGAATCGTCAAATTTGAGTCCATGTATCTCATTTTCTGTGAGAGATACCAAAAAATGGTTAACTAATAAAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATAAGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTT</canonical_amplicon>
		<polymorphic_amplicon>TAGTTGAAATGGCGGAATAAAAAAAACGAATTTCCCAAAAAAAAAACTTCCTGGAGGATTTGAACTTGTGGGCCCACTGTTGGAGGTGCCGTGTCGCTACCGGTTGAGCTACTTTGGCTTTAGAAGCCCACCTCATTTGAGCTCAATTATTTCGATTCCTATGAGAGATATCAAAAATTAGTCAACTGAAAAAATAATGGTGATGTTATGATAAAAATGTTATTAGTTGACAAATTTTTGATATCTTGCATAACTACCAAGATAATTGAGCTCAAAGTGCGCATATAGCTAAACAATCTAATAGAACGCCACTCGAATCGTCAAATTTGAGYCCATGTATCTCATTTTCTGTGAGAGATACCAAAAAATGGTTAACTAATAAAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATAAGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36268</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>219388</contig_pos>
        <strand></strand>
        <context>ataccaaaaa[A/G]tggttaacta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGTCAAATTTGAGTCCATGTATCTCATTTTCTGTGAGAGATACCAAAAA</left_flank>
        <right_flank>TGGTTAACTAATAAAATGTTGCTGATATCATGATAAAAATTTTATAGGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGGGATTACGGTACATATTTTTAGGGCATAAAAAGTTTAAACTCCTAGTTTTCCAATTTTTGATAAAAAAATTATTAGGCTCTAATTTTATCAAAGTACTAAGTTAATAACAACATTCTGTAAATTTTTAGTTGAAATGGCGGAATAAAAAAAACGAATTTCCCAAAAAAAAAACTTCCTGGAGGATTTGAACTTGTGGGCCCACTGTTGGAGGTGCCGTGTCGCTACCGGTTGAGCTACTTTGGCTTTAGAAGCCCACCTCATTTGAGCTCAATTATTTCGATTCCTATGAGAGATATCAAAAATTAGTCAACTGAAAAAATAATGGTGATGTTATGATAAAAATGTTATTAGTTGACAAATTTTTGATATCTTGCATAACTACCAAGATAATTGAGCTCAAAGTGCGCATATAGCTAAACAATCTAATAGAACGCCACTCGAATCGTCAAATTTGAGTCCATGTATCTCATTTTCTGTGAGAGATACCAAAAAATGGTTAACTAATAAAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATAAGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTTAATTTTCCGAGGAAAAAAACCACCTGCCATTCTCTATATCCCTTTATCTAATCAAATAAATATCCGCATAGTCACTTGTATCCCCCCCCCCCCCCCCCCCCCAATTTAATCTAATCTAATCACCTTTCCCTCCATATTTTTTCCCATGACATGACAATTGACATTTTTCATCCCAATACATTTTTATGTTTTTGCTGATTGGAAATTGTTTGGAAATTTGATATTTTGTCAGGAAATGAGCATCGGAGTAAACAATTTTTTGTAGAGCATGTCATAACTTTTTCATTTATTCGATATTTCAAATTTTTGTTATCTCTTTTAA</canonical>
            <polymorphic>TTTTTGGGATTACGGTACATATTTTTAGGGCATAAAAAGTTTAAACTCCTAGTTTTCCAATTTTTGATAAAAAAATTATTAGGCTCTAATTTTATCAAAGTACTAAGTTAATAACAACATTCTGTAAATTTTTAGTTGAAATGGCGGAATAAAAAAAACGAATTTCCCAAAAAAAAAACTTCCTGGAGGATTTGAACTTGTGGGCCCACTGTTGGAGGTGCCGTGTCGCTACCGGTTGAGCTACTTTGGCTTTAGAAGCCCACCTCATTTGAGCTCAATTATTTCGATTCCTATGAGAGATATCAAAAATTAGTCAACTGAAAAAATAATGGTGATGTTATGATAAAAATGTTATTAGTTGACAAATTTTTGATATCTTGCATAACTACCAAGATAATTGAGCTCAAAGTGCGCATATAGCTAAACAATCTAATAGAACGCCACTCGAATCGTCAAATTTGAGTCCATGTATCTCATTTTCTGTGAGAGATACCAAAAARTGGTTAACTAATAAAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATAAGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTTAATTTTCCGAGGAAAAAAACCACCTGCCATTCTCTATATCCCTTTATCTAATCAAATAAATATCCGCATAGTCACTTGTATCCCCCCCCCCCCCCCCCCCCCAATTTAATCTAATCTAATCACCTTTCCCTCCATATTTTTTCCCATGACATGACAATTGACATTTTTCATCCCAATACATTTTTATGTTTTTGCTGATTGGAAATTGTTTGGAAATTTGATATTTTGTCAGGAAATGAGCATCGGAGTAAACAATTTTTTGTAGAGCATGTCATAACTTTTTCATTTATTCGATATTTCAAATTTTTGTTATCTCTTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTTGAAATGGCGGAATAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGGAGATTTTTCGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>546</pcr_amplicon_size>
		<canonical_amplicon>TAGTTGAAATGGCGGAATAAAAAAAACGAATTTCCCAAAAAAAAAACTTCCTGGAGGATTTGAACTTGTGGGCCCACTGTTGGAGGTGCCGTGTCGCTACCGGTTGAGCTACTTTGGCTTTAGAAGCCCACCTCATTTGAGCTCAATTATTTCGATTCCTATGAGAGATATCAAAAATTAGTCAACTGAAAAAATAATGGTGATGTTATGATAAAAATGTTATTAGTTGACAAATTTTTGATATCTTGCATAACTACCAAGATAATTGAGCTCAAAGTGCGCATATAGCTAAACAATCTAATAGAACGCCACTCGAATCGTCAAATTTGAGTCCATGTATCTCATTTTCTGTGAGAGATACCAAAAAATGGTTAACTAATAAAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATAAGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTT</canonical_amplicon>
		<polymorphic_amplicon>TAGTTGAAATGGCGGAATAAAAAAAACGAATTTCCCAAAAAAAAAACTTCCTGGAGGATTTGAACTTGTGGGCCCACTGTTGGAGGTGCCGTGTCGCTACCGGTTGAGCTACTTTGGCTTTAGAAGCCCACCTCATTTGAGCTCAATTATTTCGATTCCTATGAGAGATATCAAAAATTAGTCAACTGAAAAAATAATGGTGATGTTATGATAAAAATGTTATTAGTTGACAAATTTTTGATATCTTGCATAACTACCAAGATAATTGAGCTCAAAGTGCGCATATAGCTAAACAATCTAATAGAACGCCACTCGAATCGTCAAATTTGAGTCCATGTATCTCATTTTCTGTGAGAGATACCAAAAARTGGTTAACTAATAAAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATAAGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36269</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>219401</contig_pos>
        <strand></strand>
        <context>gttaactaat[A/G]aaatgttgct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCCATGTATCTCATTTTCTGTGAGAGATACCAAAAAATGGTTAACTAAT</left_flank>
        <right_flank>AAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTACATATTTTTAGGGCATAAAAAGTTTAAACTCCTAGTTTTCCAATTTTTGATAAAAAAATTATTAGGCTCTAATTTTATCAAAGTACTAAGTTAATAACAACATTCTGTAAATTTTTAGTTGAAATGGCGGAATAAAAAAAACGAATTTCCCAAAAAAAAAACTTCCTGGAGGATTTGAACTTGTGGGCCCACTGTTGGAGGTGCCGTGTCGCTACCGGTTGAGCTACTTTGGCTTTAGAAGCCCACCTCATTTGAGCTCAATTATTTCGATTCCTATGAGAGATATCAAAAATTAGTCAACTGAAAAAATAATGGTGATGTTATGATAAAAATGTTATTAGTTGACAAATTTTTGATATCTTGCATAACTACCAAGATAATTGAGCTCAAAGTGCGCATATAGCTAAACAATCTAATAGAACGCCACTCGAATCGTCAAATTTGAGTCCATGTATCTCATTTTCTGTGAGAGATACCAAAAAATGGTTAACTAATAAAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATAAGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTTAATTTTCCGAGGAAAAAAACCACCTGCCATTCTCTATATCCCTTTATCTAATCAAATAAATATCCGCATAGTCACTTGTATCCCCCCCCCCCCCCCCCCCCCAATTTAATCTAATCTAATCACCTTTCCCTCCATATTTTTTCCCATGACATGACAATTGACATTTTTCATCCCAATACATTTTTATGTTTTTGCTGATTGGAAATTGTTTGGAAATTTGATATTTTGTCAGGAAATGAGCATCGGAGTAAACAATTTTTTGTAGAGCATGTCATAACTTTTTCATTTATTCGATATTTCAAATTTTTGTTATCTCTTTTAAAAATATTTGTAAC</canonical>
            <polymorphic>GGTACATATTTTTAGGGCATAAAAAGTTTAAACTCCTAGTTTTCCAATTTTTGATAAAAAAATTATTAGGCTCTAATTTTATCAAAGTACTAAGTTAATAACAACATTCTGTAAATTTTTAGTTGAAATGGCGGAATAAAAAAAACGAATTTCCCAAAAAAAAAACTTCCTGGAGGATTTGAACTTGTGGGCCCACTGTTGGAGGTGCCGTGTCGCTACCGGTTGAGCTACTTTGGCTTTAGAAGCCCACCTCATTTGAGCTCAATTATTTCGATTCCTATGAGAGATATCAAAAATTAGTCAACTGAAAAAATAATGGTGATGTTATGATAAAAATGTTATTAGTTGACAAATTTTTGATATCTTGCATAACTACCAAGATAATTGAGCTCAAAGTGCGCATATAGCTAAACAATCTAATAGAACGCCACTCGAATCGTCAAATTTGAGTCCATGTATCTCATTTTCTGTGAGAGATACCAAAAAATGGTTAACTAATRAAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATAAGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTTAATTTTCCGAGGAAAAAAACCACCTGCCATTCTCTATATCCCTTTATCTAATCAAATAAATATCCGCATAGTCACTTGTATCCCCCCCCCCCCCCCCCCCCCAATTTAATCTAATCTAATCACCTTTCCCTCCATATTTTTTCCCATGACATGACAATTGACATTTTTCATCCCAATACATTTTTATGTTTTTGCTGATTGGAAATTGTTTGGAAATTTGATATTTTGTCAGGAAATGAGCATCGGAGTAAACAATTTTTTGTAGAGCATGTCATAACTTTTTCATTTATTCGATATTTCAAATTTTTGTTATCTCTTTTAAAAATATTTGTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTTGAAATGGCGGAATAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGGAGATTTTTCGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>546</pcr_amplicon_size>
		<canonical_amplicon>TAGTTGAAATGGCGGAATAAAAAAAACGAATTTCCCAAAAAAAAAACTTCCTGGAGGATTTGAACTTGTGGGCCCACTGTTGGAGGTGCCGTGTCGCTACCGGTTGAGCTACTTTGGCTTTAGAAGCCCACCTCATTTGAGCTCAATTATTTCGATTCCTATGAGAGATATCAAAAATTAGTCAACTGAAAAAATAATGGTGATGTTATGATAAAAATGTTATTAGTTGACAAATTTTTGATATCTTGCATAACTACCAAGATAATTGAGCTCAAAGTGCGCATATAGCTAAACAATCTAATAGAACGCCACTCGAATCGTCAAATTTGAGTCCATGTATCTCATTTTCTGTGAGAGATACCAAAAAATGGTTAACTAATAAAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATAAGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTT</canonical_amplicon>
		<polymorphic_amplicon>TAGTTGAAATGGCGGAATAAAAAAAACGAATTTCCCAAAAAAAAAACTTCCTGGAGGATTTGAACTTGTGGGCCCACTGTTGGAGGTGCCGTGTCGCTACCGGTTGAGCTACTTTGGCTTTAGAAGCCCACCTCATTTGAGCTCAATTATTTCGATTCCTATGAGAGATATCAAAAATTAGTCAACTGAAAAAATAATGGTGATGTTATGATAAAAATGTTATTAGTTGACAAATTTTTGATATCTTGCATAACTACCAAGATAATTGAGCTCAAAGTGCGCATATAGCTAAACAATCTAATAGAACGCCACTCGAATCGTCAAATTTGAGTCCATGTATCTCATTTTCTGTGAGAGATACCAAAAAATGGTTAACTAATRAAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATAAGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36270</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>219479</contig_pos>
        <strand></strand>
        <context>gagatatata[A/G]gctcaaagtG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATA</left_flank>
        <right_flank>GCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATCAAAGTACTAAGTTAATAACAACATTCTGTAAATTTTTAGTTGAAATGGCGGAATAAAAAAAACGAATTTCCCAAAAAAAAAACTTCCTGGAGGATTTGAACTTGTGGGCCCACTGTTGGAGGTGCCGTGTCGCTACCGGTTGAGCTACTTTGGCTTTAGAAGCCCACCTCATTTGAGCTCAATTATTTCGATTCCTATGAGAGATATCAAAAATTAGTCAACTGAAAAAATAATGGTGATGTTATGATAAAAATGTTATTAGTTGACAAATTTTTGATATCTTGCATAACTACCAAGATAATTGAGCTCAAAGTGCGCATATAGCTAAACAATCTAATAGAACGCCACTCGAATCGTCAAATTTGAGTCCATGTATCTCATTTTCTGTGAGAGATACCAAAAAATGGTTAACTAATAAAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATAAGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTTAATTTTCCGAGGAAAAAAACCACCTGCCATTCTCTATATCCCTTTATCTAATCAAATAAATATCCGCATAGTCACTTGTATCCCCCCCCCCCCCCCCCCCCCAATTTAATCTAATCTAATCACCTTTCCCTCCATATTTTTTCCCATGACATGACAATTGACATTTTTCATCCCAATACATTTTTATGTTTTTGCTGATTGGAAATTGTTTGGAAATTTGATATTTTGTCAGGAAATGAGCATCGGAGTAAACAATTTTTTGTAGAGCATGTCATAACTTTTTCATTTATTCGATATTTCAAATTTTTGTTATCTCTTTTAAAAATATTTGTAACTTTCTATTTTTTTAAAAAAATATTTCTAGTTTCTATGACCCTTTATTTTTCTGGATAAATCCAATTTCCTATTCTATT</canonical>
            <polymorphic>TTATCAAAGTACTAAGTTAATAACAACATTCTGTAAATTTTTAGTTGAAATGGCGGAATAAAAAAAACGAATTTCCCAAAAAAAAAACTTCCTGGAGGATTTGAACTTGTGGGCCCACTGTTGGAGGTGCCGTGTCGCTACCGGTTGAGCTACTTTGGCTTTAGAAGCCCACCTCATTTGAGCTCAATTATTTCGATTCCTATGAGAGATATCAAAAATTAGTCAACTGAAAAAATAATGGTGATGTTATGATAAAAATGTTATTAGTTGACAAATTTTTGATATCTTGCATAACTACCAAGATAATTGAGCTCAAAGTGCGCATATAGCTAAACAATCTAATAGAACGCCACTCGAATCGTCAAATTTGAGTCCATGTATCTCATTTTCTGTGAGAGATACCAAAAAATGGTTAACTAATAAAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATARGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTTAATTTTCCGAGGAAAAAAACCACCTGCCATTCTCTATATCCCTTTATCTAATCAAATAAATATCCGCATAGTCACTTGTATCCCCCCCCCCCCCCCCCCCCCAATTTAATCTAATCTAATCACCTTTCCCTCCATATTTTTTCCCATGACATGACAATTGACATTTTTCATCCCAATACATTTTTATGTTTTTGCTGATTGGAAATTGTTTGGAAATTTGATATTTTGTCAGGAAATGAGCATCGGAGTAAACAATTTTTTGTAGAGCATGTCATAACTTTTTCATTTATTCGATATTTCAAATTTTTGTTATCTCTTTTAAAAATATTTGTAACTTTCTATTTTTTTAAAAAAATATTTCTAGTTTCTATGACCCTTTATTTTTCTGGATAAATCCAATTTCCTATTCTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>499 172 149 129 33 18</canonical_bands>
                <polymorphic_bands>671 149 129 33 18</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>499 172 129 113 36 18 15 9 9</canonical_bands>
                <polymorphic_bands>671 129 113 36 18 15 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGTTGAAATGGCGGAATAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGGAGATTTTTCGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>546</pcr_amplicon_size>
		<canonical_amplicon>TAGTTGAAATGGCGGAATAAAAAAAACGAATTTCCCAAAAAAAAAACTTCCTGGAGGATTTGAACTTGTGGGCCCACTGTTGGAGGTGCCGTGTCGCTACCGGTTGAGCTACTTTGGCTTTAGAAGCCCACCTCATTTGAGCTCAATTATTTCGATTCCTATGAGAGATATCAAAAATTAGTCAACTGAAAAAATAATGGTGATGTTATGATAAAAATGTTATTAGTTGACAAATTTTTGATATCTTGCATAACTACCAAGATAATTGAGCTCAAAGTGCGCATATAGCTAAACAATCTAATAGAACGCCACTCGAATCGTCAAATTTGAGTCCATGTATCTCATTTTCTGTGAGAGATACCAAAAAATGGTTAACTAATAAAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATAAGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTT</canonical_amplicon>
		<polymorphic_amplicon>TAGTTGAAATGGCGGAATAAAAAAAACGAATTTCCCAAAAAAAAAACTTCCTGGAGGATTTGAACTTGTGGGCCCACTGTTGGAGGTGCCGTGTCGCTACCGGTTGAGCTACTTTGGCTTTAGAAGCCCACCTCATTTGAGCTCAATTATTTCGATTCCTATGAGAGATATCAAAAATTAGTCAACTGAAAAAATAATGGTGATGTTATGATAAAAATGTTATTAGTTGACAAATTTTTGATATCTTGCATAACTACCAAGATAATTGAGCTCAAAGTGCGCATATAGCTAAACAATCTAATAGAACGCCACTCGAATCGTCAAATTTGAGTCCATGTATCTCATTTTCTGTGAGAGATACCAAAAAATGGTTAACTAATAAAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATARGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36271</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>219518</contig_pos>
        <strand>+</strand>
        <context>GTGTTTGAGG[C/T]AAATCAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAGATATATAAGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGG</left_flank>
        <right_flank>AAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTTAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAGTTGAAATGGCGGAATAAAAAAAACGAATTTCCCAAAAAAAAAACTTCCTGGAGGATTTGAACTTGTGGGCCCACTGTTGGAGGTGCCGTGTCGCTACCGGTTGAGCTACTTTGGCTTTAGAAGCCCACCTCATTTGAGCTCAATTATTTCGATTCCTATGAGAGATATCAAAAATTAGTCAACTGAAAAAATAATGGTGATGTTATGATAAAAATGTTATTAGTTGACAAATTTTTGATATCTTGCATAACTACCAAGATAATTGAGCTCAAAGTGCGCATATAGCTAAACAATCTAATAGAACGCCACTCGAATCGTCAAATTTGAGTCCATGTATCTCATTTTCTGTGAGAGATACCAAAAAATGGTTAACTAATAAAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATAAGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTTAATTTTCCGAGGAAAAAAACCACCTGCCATTCTCTATATCCCTTTATCTAATCAAATAAATATCCGCATAGTCACTTGTATCCCCCCCCCCCCCCCCCCCCCAATTTAATCTAATCTAATCACCTTTCCCTCCATATTTTTTCCCATGACATGACAATTGACATTTTTCATCCCAATACATTTTTATGTTTTTGCTGATTGGAAATTGTTTGGAAATTTGATATTTTGTCAGGAAATGAGCATCGGAGTAAACAATTTTTTGTAGAGCATGTCATAACTTTTTCATTTATTCGATATTTCAAATTTTTGTTATCTCTTTTAAAAATATTTGTAACTTTCTATTTTTTTAAAAAAATATTTCTAGTTTCTATGACCCTTTATTTTTCTGGATAAATCCAATTTCCTATTCTATTTCCTTTTTTATATTTGAAAATTATTTAATTTCCGCTCTT</canonical>
            <polymorphic>TTTAGTTGAAATGGCGGAATAAAAAAAACGAATTTCCCAAAAAAAAAACTTCCTGGAGGATTTGAACTTGTGGGCCCACTGTTGGAGGTGCCGTGTCGCTACCGGTTGAGCTACTTTGGCTTTAGAAGCCCACCTCATTTGAGCTCAATTATTTCGATTCCTATGAGAGATATCAAAAATTAGTCAACTGAAAAAATAATGGTGATGTTATGATAAAAATGTTATTAGTTGACAAATTTTTGATATCTTGCATAACTACCAAGATAATTGAGCTCAAAGTGCGCATATAGCTAAACAATCTAATAGAACGCCACTCGAATCGTCAAATTTGAGTCCATGTATCTCATTTTCTGTGAGAGATACCAAAAAATGGTTAACTAATAAAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATAAGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGYAAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTTAATTTTCCGAGGAAAAAAACCACCTGCCATTCTCTATATCCCTTTATCTAATCAAATAAATATCCGCATAGTCACTTGTATCCCCCCCCCCCCCCCCCCCCCAATTTAATCTAATCTAATCACCTTTCCCTCCATATTTTTTCCCATGACATGACAATTGACATTTTTCATCCCAATACATTTTTATGTTTTTGCTGATTGGAAATTGTTTGGAAATTTGATATTTTGTCAGGAAATGAGCATCGGAGTAAACAATTTTTTGTAGAGCATGTCATAACTTTTTCATTTATTCGATATTTCAAATTTTTGTTATCTCTTTTAAAAATATTTGTAACTTTCTATTTTTTTAAAAAAATATTTCTAGTTTCTATGACCCTTTATTTTTCTGGATAAATCCAATTTCCTATTCTATTTCCTTTTTTATATTTGAAAATTATTTAATTTCCGCTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTTGAAATGGCGGAATAA</pcr_primer_p1>
		<pcr_primer_p2>CGGAAAATTAAAGGAGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>555</pcr_amplicon_size>
		<canonical_amplicon>TAGTTGAAATGGCGGAATAAAAAAAACGAATTTCCCAAAAAAAAAACTTCCTGGAGGATTTGAACTTGTGGGCCCACTGTTGGAGGTGCCGTGTCGCTACCGGTTGAGCTACTTTGGCTTTAGAAGCCCACCTCATTTGAGCTCAATTATTTCGATTCCTATGAGAGATATCAAAAATTAGTCAACTGAAAAAATAATGGTGATGTTATGATAAAAATGTTATTAGTTGACAAATTTTTGATATCTTGCATAACTACCAAGATAATTGAGCTCAAAGTGCGCATATAGCTAAACAATCTAATAGAACGCCACTCGAATCGTCAAATTTGAGTCCATGTATCTCATTTTCTGTGAGAGATACCAAAAAATGGTTAACTAATAAAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATAAGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTTAATTTTCCG</canonical_amplicon>
		<polymorphic_amplicon>TAGTTGAAATGGCGGAATAAAAAAAACGAATTTCCCAAAAAAAAAACTTCCTGGAGGATTTGAACTTGTGGGCCCACTGTTGGAGGTGCCGTGTCGCTACCGGTTGAGCTACTTTGGCTTTAGAAGCCCACCTCATTTGAGCTCAATTATTTCGATTCCTATGAGAGATATCAAAAATTAGTCAACTGAAAAAATAATGGTGATGTTATGATAAAAATGTTATTAGTTGACAAATTTTTGATATCTTGCATAACTACCAAGATAATTGAGCTCAAAGTGCGCATATAGCTAAACAATCTAATAGAACGCCACTCGAATCGTCAAATTTGAGTCCATGTATCTCATTTTCTGTGAGAGATACCAAAAAATGGTTAACTAATAAAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATAAGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGYAAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTTAATTTTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36272</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>219540</contig_pos>
        <strand>+</strand>
        <context>CCTACTGTAA[C/T]CCAAAAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAA</left_flank>
        <right_flank>CCAAAAAAAACCGAAAAATCTCCTTTAATTTTCCGAGGAAAAAAACCACC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAACGAATTTCCCAAAAAAAAAACTTCCTGGAGGATTTGAACTTGTGGGCCCACTGTTGGAGGTGCCGTGTCGCTACCGGTTGAGCTACTTTGGCTTTAGAAGCCCACCTCATTTGAGCTCAATTATTTCGATTCCTATGAGAGATATCAAAAATTAGTCAACTGAAAAAATAATGGTGATGTTATGATAAAAATGTTATTAGTTGACAAATTTTTGATATCTTGCATAACTACCAAGATAATTGAGCTCAAAGTGCGCATATAGCTAAACAATCTAATAGAACGCCACTCGAATCGTCAAATTTGAGTCCATGTATCTCATTTTCTGTGAGAGATACCAAAAAATGGTTAACTAATAAAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATAAGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTTAATTTTCCGAGGAAAAAAACCACCTGCCATTCTCTATATCCCTTTATCTAATCAAATAAATATCCGCATAGTCACTTGTATCCCCCCCCCCCCCCCCCCCCCAATTTAATCTAATCTAATCACCTTTCCCTCCATATTTTTTCCCATGACATGACAATTGACATTTTTCATCCCAATACATTTTTATGTTTTTGCTGATTGGAAATTGTTTGGAAATTTGATATTTTGTCAGGAAATGAGCATCGGAGTAAACAATTTTTTGTAGAGCATGTCATAACTTTTTCATTTATTCGATATTTCAAATTTTTGTTATCTCTTTTAAAAATATTTGTAACTTTCTATTTTTTTAAAAAAATATTTCTAGTTTCTATGACCCTTTATTTTTCTGGATAAATCCAATTTCCTATTCTATTTCCTTTTTTATATTTGAAAATTATTTAATTTCCGCTCTTCGAAATCTGAAAATCTAAATAA</canonical>
            <polymorphic>AAAAAACGAATTTCCCAAAAAAAAAACTTCCTGGAGGATTTGAACTTGTGGGCCCACTGTTGGAGGTGCCGTGTCGCTACCGGTTGAGCTACTTTGGCTTTAGAAGCCCACCTCATTTGAGCTCAATTATTTCGATTCCTATGAGAGATATCAAAAATTAGTCAACTGAAAAAATAATGGTGATGTTATGATAAAAATGTTATTAGTTGACAAATTTTTGATATCTTGCATAACTACCAAGATAATTGAGCTCAAAGTGCGCATATAGCTAAACAATCTAATAGAACGCCACTCGAATCGTCAAATTTGAGTCCATGTATCTCATTTTCTGTGAGAGATACCAAAAAATGGTTAACTAATAAAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATAAGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAAYCCAAAAAAAACCGAAAAATCTCCTTTAATTTTCCGAGGAAAAAAACCACCTGCCATTCTCTATATCCCTTTATCTAATCAAATAAATATCCGCATAGTCACTTGTATCCCCCCCCCCCCCCCCCCCCCAATTTAATCTAATCTAATCACCTTTCCCTCCATATTTTTTCCCATGACATGACAATTGACATTTTTCATCCCAATACATTTTTATGTTTTTGCTGATTGGAAATTGTTTGGAAATTTGATATTTTGTCAGGAAATGAGCATCGGAGTAAACAATTTTTTGTAGAGCATGTCATAACTTTTTCATTTATTCGATATTTCAAATTTTTGTTATCTCTTTTAAAAATATTTGTAACTTTCTATTTTTTTAAAAAAATATTTCTAGTTTCTATGACCCTTTATTTTTCTGGATAAATCCAATTTCCTATTCTATTTCCTTTTTTATATTTGAAAATTATTTAATTTCCGCTCTTCGAAATCTGAAAATCTAAATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>495 260 144 101</canonical_bands>
                <polymorphic_bands>596 260 144</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCCGGCGTTCTATTAGAGT</pcr_primer_p1>
		<pcr_primer_p2>TATTGGGATGAAAAATGTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>GTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTTAATTTTCCGAGGAAAAAAACCACCTGCCATTCTCTATATCCCTTTATCTAATCAAATAAATATCCGCATAGTCACTTGTATCCCCCCCCCCCCCCCCCCCCCAATTTAATCTAATCTAATCACCTTTCCCTCCATATTTTTTCCCATGACATGACAATTGACATTTTTCATCCCAATA</canonical_amplicon>
		<polymorphic_amplicon>GTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAAYCCAAAAAAAACCGAAAAATCTCCTTTAATTTTCCGAGGAAAAAAACCACCTGCCATTCTCTATATCCCTTTATCTAATCAAATAAATATCCGCATAGTCACTTGTATCCCCCCCCCCCCCCCCCCCCCAATTTAATCTAATCTAATCACCTTTCCCTCCATATTTTTTCCCATGACATGACAATTGACATTTTTCATCCCAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36273</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>219638</contig_pos>
        <strand>+</strand>
        <context>ATCCGCATAG[C/T]CACTTGTATc</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCTGCCATTCTCTATATCCCTTTATCTAATCAAATAAATATCCGCATAG</left_flank>
        <right_flank>CACTTGTATCCCCCCCCCCCCCCCCCCCCCAATTTAATCTAATCTAATCA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAGAAGCCCACCTCATTTGAGCTCAATTATTTCGATTCCTATGAGAGATATCAAAAATTAGTCAACTGAAAAAATAATGGTGATGTTATGATAAAAATGTTATTAGTTGACAAATTTTTGATATCTTGCATAACTACCAAGATAATTGAGCTCAAAGTGCGCATATAGCTAAACAATCTAATAGAACGCCACTCGAATCGTCAAATTTGAGTCCATGTATCTCATTTTCTGTGAGAGATACCAAAAAATGGTTAACTAATAAAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATAAGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTTAATTTTCCGAGGAAAAAAACCACCTGCCATTCTCTATATCCCTTTATCTAATCAAATAAATATCCGCATAGTCACTTGTATCCCCCCCCCCCCCCCCCCCCCAATTTAATCTAATCTAATCACCTTTCCCTCCATATTTTTTCCCATGACATGACAATTGACATTTTTCATCCCAATACATTTTTATGTTTTTGCTGATTGGAAATTGTTTGGAAATTTGATATTTTGTCAGGAAATGAGCATCGGAGTAAACAATTTTTTGTAGAGCATGTCATAACTTTTTCATTTATTCGATATTTCAAATTTTTGTTATCTCTTTTAAAAATATTTGTAACTTTCTATTTTTTTAAAAAAATATTTCTAGTTTCTATGACCCTTTATTTTTCTGGATAAATCCAATTTCCTATTCTATTTCCTTTTTTATATTTGAAAATTATTTAATTTCCGCTCTTCGAAATCTGAAAATCTAAATAATCACAAATTTGTCCTAACTACACCCTTTCCACGCACTTTTTTGTGCTCTCTTATCTGCCTTATATGACTCAGATTTTCAATTTTCAGCCAAAAAAATT</canonical>
            <polymorphic>TTTAGAAGCCCACCTCATTTGAGCTCAATTATTTCGATTCCTATGAGAGATATCAAAAATTAGTCAACTGAAAAAATAATGGTGATGTTATGATAAAAATGTTATTAGTTGACAAATTTTTGATATCTTGCATAACTACCAAGATAATTGAGCTCAAAGTGCGCATATAGCTAAACAATCTAATAGAACGCCACTCGAATCGTCAAATTTGAGTCCATGTATCTCATTTTCTGTGAGAGATACCAAAAAATGGTTAACTAATAAAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATAAGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTTAATTTTCCGAGGAAAAAAACCACCTGCCATTCTCTATATCCCTTTATCTAATCAAATAAATATCCGCATAGYCACTTGTATCCCCCCCCCCCCCCCCCCCCCAATTTAATCTAATCTAATCACCTTTCCCTCCATATTTTTTCCCATGACATGACAATTGACATTTTTCATCCCAATACATTTTTATGTTTTTGCTGATTGGAAATTGTTTGGAAATTTGATATTTTGTCAGGAAATGAGCATCGGAGTAAACAATTTTTTGTAGAGCATGTCATAACTTTTTCATTTATTCGATATTTCAAATTTTTGTTATCTCTTTTAAAAATATTTGTAACTTTCTATTTTTTTAAAAAAATATTTCTAGTTTCTATGACCCTTTATTTTTCTGGATAAATCCAATTTCCTATTCTATTTCCTTTTTTATATTTGAAAATTATTTAATTTCCGCTCTTCGAAATCTGAAAATCTAAATAATCACAAATTTGTCCTAACTACACCCTTTCCACGCACTTTTTTGTGCTCTCTTATCTGCCTTATATGACTCAGATTTTCAATTTTCAGCCAAAAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>397 260 242 101</canonical_bands>
                <polymorphic_bands>397 361 242</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACCGAAAAATCTCCTTTAAT</pcr_primer_p1>
		<pcr_primer_p2>ACAAAATATCAAATTTCCAAACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAACCGAAAAATCTCCTTTAATTTTCCGAGGAAAAAAACCACCTGCCATTCTCTATATCCCTTTATCTAATCAAATAAATATCCGCATAGTCACTTGTATCCCCCCCCCCCCCCCCCCCCCAATTTAATCTAATCTAATCACCTTTCCCTCCATATTTTTTCCCATGACATGACAATTGACATTTTTCATCCCAATACATTTTTATGTTTTTGCTGATTGGAAATTGTTTGGAAATTTGATATTTTGT</canonical_amplicon>
		<polymorphic_amplicon>AAACCGAAAAATCTCCTTTAATTTTCCGAGGAAAAAAACCACCTGCCATTCTCTATATCCCTTTATCTAATCAAATAAATATCCGCATAGYCACTTGTATCCCCCCCCCCCCCCCCCCCCCAATTTAATCTAATCTAATCACCTTTCCCTCCATATTTTTTCCCATGACATGACAATTGACATTTTTCATCCCAATACATTTTTATGTTTTTGCTGATTGGAAATTGTTTGGAAATTTGATATTTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36274</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>219761</contig_pos>
        <strand>+</strand>
        <context>TATGTTTTTG[C/T]TGATTGGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATGACATGACAATTGACATTTTTCATCCCAATACATTTTTATGTTTTTG</left_flank>
        <right_flank>TGATTGGAAATTGTTTGGAAATTTGATATTTTGTCAGGAAATGAGCATCG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCTTGCATAACTACCAAGATAATTGAGCTCAAAGTGCGCATATAGCTAAACAATCTAATAGAACGCCACTCGAATCGTCAAATTTGAGTCCATGTATCTCATTTTCTGTGAGAGATACCAAAAAATGGTTAACTAATAAAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATAAGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTTAATTTTCCGAGGAAAAAAACCACCTGCCATTCTCTATATCCCTTTATCTAATCAAATAAATATCCGCATAGTCACTTGTATCCCCCCCCCCCCCCCCCCCCCAATTTAATCTAATCTAATCACCTTTCCCTCCATATTTTTTCCCATGACATGACAATTGACATTTTTCATCCCAATACATTTTTATGTTTTTGCTGATTGGAAATTGTTTGGAAATTTGATATTTTGTCAGGAAATGAGCATCGGAGTAAACAATTTTTTGTAGAGCATGTCATAACTTTTTCATTTATTCGATATTTCAAATTTTTGTTATCTCTTTTAAAAATATTTGTAACTTTCTATTTTTTTAAAAAAATATTTCTAGTTTCTATGACCCTTTATTTTTCTGGATAAATCCAATTTCCTATTCTATTTCCTTTTTTATATTTGAAAATTATTTAATTTCCGCTCTTCGAAATCTGAAAATCTAAATAATCACAAATTTGTCCTAACTACACCCTTTCCACGCACTTTTTTGTGCTCTCTTATCTGCCTTATATGACTCAGATTTTCAATTTTCAGCCAAAAAAATTTTTCCAGCAGACAGAGATTATATTCTTGCTCTCTTCGGCTCTCTCCCATTTTCTGATTTTTAATCCGCTACGTCCATCAAGAGATATGCACTAATTTTTGCTCACATTTTCAGATTTCAAAAA</canonical>
            <polymorphic>TATCTTGCATAACTACCAAGATAATTGAGCTCAAAGTGCGCATATAGCTAAACAATCTAATAGAACGCCACTCGAATCGTCAAATTTGAGTCCATGTATCTCATTTTCTGTGAGAGATACCAAAAAATGGTTAACTAATAAAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATAAGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTTAATTTTCCGAGGAAAAAAACCACCTGCCATTCTCTATATCCCTTTATCTAATCAAATAAATATCCGCATAGTCACTTGTATCCCCCCCCCCCCCCCCCCCCCAATTTAATCTAATCTAATCACCTTTCCCTCCATATTTTTTCCCATGACATGACAATTGACATTTTTCATCCCAATACATTTTTATGTTTTTGYTGATTGGAAATTGTTTGGAAATTTGATATTTTGTCAGGAAATGAGCATCGGAGTAAACAATTTTTTGTAGAGCATGTCATAACTTTTTCATTTATTCGATATTTCAAATTTTTGTTATCTCTTTTAAAAATATTTGTAACTTTCTATTTTTTTAAAAAAATATTTCTAGTTTCTATGACCCTTTATTTTTCTGGATAAATCCAATTTCCTATTCTATTTCCTTTTTTATATTTGAAAATTATTTAATTTCCGCTCTTCGAAATCTGAAAATCTAAATAATCACAAATTTGTCCTAACTACACCCTTTCCACGCACTTTTTTGTGCTCTCTTATCTGCCTTATATGACTCAGATTTTCAATTTTCAGCCAAAAAAATTTTTCCAGCAGACAGAGATTATATTCTTGCTCTCTTCGGCTCTCTCCCATTTTCTGATTTTTAATCCGCTACGTCCATCAAGAGATATGCACTAATTTTTGCTCACATTTTCAGATTTCAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCATTCTCTATATCCCTTTATC</pcr_primer_p1>
		<pcr_primer_p2>TGTTTACTCCGATGCTCATT</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>GCCATTCTCTATATCCCTTTATCTAATCAAATAAATATCCGCATAGTCACTTGTATCCCCCCCCCCCCCCCCCCCCCAATTTAATCTAATCTAATCACCTTTCCCTCCATATTTTTTCCCATGACATGACAATTGACATTTTTCATCCCAATACATTTTTATGTTTTTGCTGATTGGAAATTGTTTGGAAATTTGATATTTTGTCAGGAAATGAGCATCGGAGTAAACA</canonical_amplicon>
		<polymorphic_amplicon>GCCATTCTCTATATCCCTTTATCTAATCAAATAAATATCCGCATAGTCACTTGTATCCCCCCCCCCCCCCCCCCCCCAATTTAATCTAATCTAATCACCTTTCCCTCCATATTTTTTCCCATGACATGACAATTGACATTTTTCATCCCAATACATTTTTATGTTTTTGYTGATTGGAAATTGTTTGGAAATTTGATATTTTGTCAGGAAATGAGCATCGGAGTAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36275</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>219844</contig_pos>
        <strand>+</strand>
        <context>CATGTCATAA[C/T]TTTTTCATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCAGGAAATGAGCATCGGAGTAAACAATTTTTTGTAGAGCATGTCATAA</left_flank>
        <right_flank>TTTTTCATTTATTCGATATTTCAAATTTTTGTTATCTCTTTTAAAAATAT</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGAGTCCATGTATCTCATTTTCTGTGAGAGATACCAAAAAATGGTTAACTAATAAAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATAAGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTTAATTTTCCGAGGAAAAAAACCACCTGCCATTCTCTATATCCCTTTATCTAATCAAATAAATATCCGCATAGTCACTTGTATCCCCCCCCCCCCCCCCCCCCCAATTTAATCTAATCTAATCACCTTTCCCTCCATATTTTTTCCCATGACATGACAATTGACATTTTTCATCCCAATACATTTTTATGTTTTTGCTGATTGGAAATTGTTTGGAAATTTGATATTTTGTCAGGAAATGAGCATCGGAGTAAACAATTTTTTGTAGAGCATGTCATAACTTTTTCATTTATTCGATATTTCAAATTTTTGTTATCTCTTTTAAAAATATTTGTAACTTTCTATTTTTTTAAAAAAATATTTCTAGTTTCTATGACCCTTTATTTTTCTGGATAAATCCAATTTCCTATTCTATTTCCTTTTTTATATTTGAAAATTATTTAATTTCCGCTCTTCGAAATCTGAAAATCTAAATAATCACAAATTTGTCCTAACTACACCCTTTCCACGCACTTTTTTGTGCTCTCTTATCTGCCTTATATGACTCAGATTTTCAATTTTCAGCCAAAAAAATTTTTCCAGCAGACAGAGATTATATTCTTGCTCTCTTCGGCTCTCTCCCATTTTCTGATTTTTAATCCGCTACGTCCATCAAGAGATATGCACTAATTTTTGCTCACATTTTCAGATTTCAAAAACGGAAAAAAACTATGTTTTCAGCTATTATTTTTTGGCTGAAAATGTTCTAAAAATTGTTTAACATTGTTCTTCTCATAGTGTA</canonical>
            <polymorphic>ATTTGAGTCCATGTATCTCATTTTCTGTGAGAGATACCAAAAAATGGTTAACTAATAAAATGTTGCTGATATCATGATAAAAATTTTATAGGTTAACAACTTTTTGATATATTTCATCAGAAGTGAGATATATAAGCTCAAAGTGGTCCGGCGTTCTATTAGAGTGTTTGAGGTAAATCAAAATGCCTACTGTAACCCAAAAAAAACCGAAAAATCTCCTTTAATTTTCCGAGGAAAAAAACCACCTGCCATTCTCTATATCCCTTTATCTAATCAAATAAATATCCGCATAGTCACTTGTATCCCCCCCCCCCCCCCCCCCCCAATTTAATCTAATCTAATCACCTTTCCCTCCATATTTTTTCCCATGACATGACAATTGACATTTTTCATCCCAATACATTTTTATGTTTTTGCTGATTGGAAATTGTTTGGAAATTTGATATTTTGTCAGGAAATGAGCATCGGAGTAAACAATTTTTTGTAGAGCATGTCATAAYTTTTTCATTTATTCGATATTTCAAATTTTTGTTATCTCTTTTAAAAATATTTGTAACTTTCTATTTTTTTAAAAAAATATTTCTAGTTTCTATGACCCTTTATTTTTCTGGATAAATCCAATTTCCTATTCTATTTCCTTTTTTATATTTGAAAATTATTTAATTTCCGCTCTTCGAAATCTGAAAATCTAAATAATCACAAATTTGTCCTAACTACACCCTTTCCACGCACTTTTTTGTGCTCTCTTATCTGCCTTATATGACTCAGATTTTCAATTTTCAGCCAAAAAAATTTTTCCAGCAGACAGAGATTATATTCTTGCTCTCTTCGGCTCTCTCCCATTTTCTGATTTTTAATCCGCTACGTCCATCAAGAGATATGCACTAATTTTTGCTCACATTTTCAGATTTCAAAAACGGAAAAAAACTATGTTTTCAGCTATTATTTTTTGGCTGAAAATGTTCTAAAAATTGTTTAACATTGTTCTTCTCATAGTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGATATTTTGTCAGGAAATGAG</pcr_primer_p1>
		<pcr_primer_p2>TTAGATTTTCAGATTTCGAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTGATATTTTGTCAGGAAATGAGCATCGGAGTAAACAATTTTTTGTAGAGCATGTCATAACTTTTTCATTTATTCGATATTTCAAATTTTTGTTATCTCTTTTAAAAATATTTGTAACTTTCTATTTTTTTAAAAAAATATTTCTAGTTTCTATGACCCTTTATTTTTCTGGATAAATCCAATTTCCTATTCTATTTCCTTTTTTATATTTGAAAATTATTTAATTTCCGCTCTTCGAAATCTGAAAATCTAA</canonical_amplicon>
		<polymorphic_amplicon>TTGATATTTTGTCAGGAAATGAGCATCGGAGTAAACAATTTTTTGTAGAGCATGTCATAAYTTTTTCATTTATTCGATATTTCAAATTTTTGTTATCTCTTTTAAAAATATTTGTAACTTTCTATTTTTTTAAAAAAATATTTCTAGTTTCTATGACCCTTTATTTTTCTGGATAAATCCAATTTCCTATTCTATTTCCTTTTTTATATTTGAAAATTATTTAATTTCCGCTCTTCGAAATCTGAAAATCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36276</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>222125</contig_pos>
        <strand></strand>
        <context>aagtcaggga[G/A]ccttctatta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTATAAGATTTTTGAAAAGAAACGAGATAAATTGGCTCAAAGTCAGGGA</left_flank>
        <right_flank>CCTTCTATTACAAATTTTACGGTCGTTAATTTCTTTCTGTTTACTGTTCC</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCATAGTAGACTTATCTGGATTTTTCTGGAATTTTTGAGTATACTAAACAAAAATAGAGCTTCAACTTTGTAGTTTACAACTTTTTTGTAAAATTTTTTCCAAATGAGATAAATGGCTTGGAACCAGCCATCCCCCATTCTGGGGTCGAGCACCAAGTAGGCGCCCTTCCACGTGGCATGTCTCCCCAGGATTAAATTTTCCAAAAAAAGATGTCAGCTTCAAAATTAAAGCTCTATTTTTGCTTAGTATACTCAAAAATTTTCAGGCTTATTCAAAAAAGTCAACTTTTTTTTATTTTAAAGTTGACAGTTTTTAACTAAAAGTCGAGTAAAACCTGTACTGTCAAGTTTGAGCTAATTTTTCTTGGTTGCTATGCAAGATATGAAAAACTTGTCAACTTATAAAATATTGATAATATTATGATAAACAATTTATCAGTTGACAATATTATAAGATTTTTGAAAAGAAACGAGATAAATTGGCTCAAAGTCAGGGAGCCTTCTATTACAAATTTTACGGTCGTTAATTTCTTTCTGTTTACTGTTCCACTCTTGATTTATCTTTTTTTCTGATTATTTTAGTAAACTCAAAATCCGAATTTCCAGGATCATGTCCTCTACCTCGACCTCGGATGACAAATCCTCTTCCACAGAAAAACGTGAAAAACCATCGTGTCCCATCGATGAGTACCGTTCTTCATCCAACAAAAAGCCCGAATTCCTGGAGAGCTACGCAGCATTCCGTCGTCCACGTACACCTCCACCAGTGAATACAGATTCAGAAGTGGATTGCACACCTTACGACCATGTACAGTACCGTCCGTTTTGCCAGACAATTCGGTTGAGAAAACGAGCAAAAGCCTACAATAAGCCAAAGAAGCCAAGGATGTCAGTGGTCATTGAGAACTTGTCCATGTTCGAGTGGTTGCATAGAGTTGGAGGTAAGAATTTAAAGGAAAGTTAGGCCACCTGTTATAGGGTGTTTAGGTTAGAAAAGT</canonical>
            <polymorphic>AATCATAGTAGACTTATCTGGATTTTTCTGGAATTTTTGAGTATACTAAACAAAAATAGAGCTTCAACTTTGTAGTTTACAACTTTTTTGTAAAATTTTTTCCAAATGAGATAAATGGCTTGGAACCAGCCATCCCCCATTCTGGGGTCGAGCACCAAGTAGGCGCCCTTCCACGTGGCATGTCTCCCCAGGATTAAATTTTCCAAAAAAAGATGTCAGCTTCAAAATTAAAGCTCTATTTTTGCTTAGTATACTCAAAAATTTTCAGGCTTATTCAAAAAAGTCAACTTTTTTTTATTTTAAAGTTGACAGTTTTTAACTAAAAGTCGAGTAAAACCTGTACTGTCAAGTTTGAGCTAATTTTTCTTGGTTGCTATGCAAGATATGAAAAACTTGTCAACTTATAAAATATTGATAATATTATGATAAACAATTTATCAGTTGACAATATTATAAGATTTTTGAAAAGAAACGAGATAAATTGGCTCAAAGTCAGGGARCCTTCTATTACAAATTTTACGGTCGTTAATTTCTTTCTGTTTACTGTTCCACTCTTGATTTATCTTTTTTTCTGATTATTTTAGTAAACTCAAAATCCGAATTTCCAGGATCATGTCCTCTACCTCGACCTCGGATGACAAATCCTCTTCCACAGAAAAACGTGAAAAACCATCGTGTCCCATCGATGAGTACCGTTCTTCATCCAACAAAAAGCCCGAATTCCTGGAGAGCTACGCAGCATTCCGTCGTCCACGTACACCTCCACCAGTGAATACAGATTCAGAAGTGGATTGCACACCTTACGACCATGTACAGTACCGTCCGTTTTGCCAGACAATTCGGTTGAGAAAACGAGCAAAAGCCTACAATAAGCCAAAGAAGCCAAGGATGTCAGTGGTCATTGAGAACTTGTCCATGTTCGAGTGGTTGCATAGAGTTGGAGGTAAGAATTTAAAGGAAAGTTAGGCCACCTGTTATAGGGTGTTTAGGTTAGAAAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>214 131 129 90 87 85 61 57 36 33 17 15 14 11 11 9</canonical_bands>
                <polymorphic_bands>229 131 129 90 87 85 61 57 36 33 17 14 11 11 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCTATTCTTCGCTCACAGA</pcr_primer_p1>
		<pcr_primer_p2>GAGTGGAACAGTAAACAGAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>631</pcr_amplicon_size>
		<canonical_amplicon>AGCCTTCTATTACAAATTTTACGGTCGTTAATTTCTTTCTGTTTACTGTTCCACTC</canonical_amplicon>
		<polymorphic_amplicon>ARCCTTCTATTACAAATTTTACGGTCGTTAATTTCTTTCTGTTTACTGTTCCACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36277</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>222152</contig_pos>
        <strand></strand>
        <context>ttacggtCGT[T/A]AATTTCTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATAAATTGGCTCAAAGTCAGGGAGCCTTCTATTACAAATTTTACGGTCGT</left_flank>
        <right_flank>AATTTCTTTCTGTTTACTGTTCCACTCTTGATTTATCTTTTTTTCTGATT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGGAATTTTTGAGTATACTAAACAAAAATAGAGCTTCAACTTTGTAGTTTACAACTTTTTTGTAAAATTTTTTCCAAATGAGATAAATGGCTTGGAACCAGCCATCCCCCATTCTGGGGTCGAGCACCAAGTAGGCGCCCTTCCACGTGGCATGTCTCCCCAGGATTAAATTTTCCAAAAAAAGATGTCAGCTTCAAAATTAAAGCTCTATTTTTGCTTAGTATACTCAAAAATTTTCAGGCTTATTCAAAAAAGTCAACTTTTTTTTATTTTAAAGTTGACAGTTTTTAACTAAAAGTCGAGTAAAACCTGTACTGTCAAGTTTGAGCTAATTTTTCTTGGTTGCTATGCAAGATATGAAAAACTTGTCAACTTATAAAATATTGATAATATTATGATAAACAATTTATCAGTTGACAATATTATAAGATTTTTGAAAAGAAACGAGATAAATTGGCTCAAAGTCAGGGAGCCTTCTATTACAAATTTTACGGTCGTTAATTTCTTTCTGTTTACTGTTCCACTCTTGATTTATCTTTTTTTCTGATTATTTTAGTAAACTCAAAATCCGAATTTCCAGGATCATGTCCTCTACCTCGACCTCGGATGACAAATCCTCTTCCACAGAAAAACGTGAAAAACCATCGTGTCCCATCGATGAGTACCGTTCTTCATCCAACAAAAAGCCCGAATTCCTGGAGAGCTACGCAGCATTCCGTCGTCCACGTACACCTCCACCAGTGAATACAGATTCAGAAGTGGATTGCACACCTTACGACCATGTACAGTACCGTCCGTTTTGCCAGACAATTCGGTTGAGAAAACGAGCAAAAGCCTACAATAAGCCAAAGAAGCCAAGGATGTCAGTGGTCATTGAGAACTTGTCCATGTTCGAGTGGTTGCATAGAGTTGGAGGTAAGAATTTAAAGGAAAGTTAGGCCACCTGTTATAGGGTGTTTAGGTTAGAAAAGTTAGGCCAGCCCTTAAAAAATCTACGCC</canonical>
            <polymorphic>CTGGAATTTTTGAGTATACTAAACAAAAATAGAGCTTCAACTTTGTAGTTTACAACTTTTTTGTAAAATTTTTTCCAAATGAGATAAATGGCTTGGAACCAGCCATCCCCCATTCTGGGGTCGAGCACCAAGTAGGCGCCCTTCCACGTGGCATGTCTCCCCAGGATTAAATTTTCCAAAAAAAGATGTCAGCTTCAAAATTAAAGCTCTATTTTTGCTTAGTATACTCAAAAATTTTCAGGCTTATTCAAAAAAGTCAACTTTTTTTTATTTTAAAGTTGACAGTTTTTAACTAAAAGTCGAGTAAAACCTGTACTGTCAAGTTTGAGCTAATTTTTCTTGGTTGCTATGCAAGATATGAAAAACTTGTCAACTTATAAAATATTGATAATATTATGATAAACAATTTATCAGTTGACAATATTATAAGATTTTTGAAAAGAAACGAGATAAATTGGCTCAAAGTCAGGGAGCCTTCTATTACAAATTTTACGGTCGTWAATTTCTTTCTGTTTACTGTTCCACTCTTGATTTATCTTTTTTTCTGATTATTTTAGTAAACTCAAAATCCGAATTTCCAGGATCATGTCCTCTACCTCGACCTCGGATGACAAATCCTCTTCCACAGAAAAACGTGAAAAACCATCGTGTCCCATCGATGAGTACCGTTCTTCATCCAACAAAAAGCCCGAATTCCTGGAGAGCTACGCAGCATTCCGTCGTCCACGTACACCTCCACCAGTGAATACAGATTCAGAAGTGGATTGCACACCTTACGACCATGTACAGTACCGTCCGTTTTGCCAGACAATTCGGTTGAGAAAACGAGCAAAAGCCTACAATAAGCCAAAGAAGCCAAGGATGTCAGTGGTCATTGAGAACTTGTCCATGTTCGAGTGGTTGCATAGAGTTGGAGGTAAGAATTTAAAGGAAAGTTAGGCCACCTGTTATAGGGTGTTTAGGTTAGAAAAGTTAGGCCAGCCCTTAAAAAATCTACGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>426 210 167 72 60 34 16 15</canonical_bands>
                <polymorphic_bands>636 167 72 60 34 16 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCTATTCTTCGCTCACAGA</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCGGATTTTGAGTTTAC</pcr_primer_p2>
		<pcr_amplicon_size>682</pcr_amplicon_size>
		<canonical_amplicon>TTAATTTCTTTCTGTTTACTGTTCCACTCTTGATTTATCTTTTTTTCTGATTATTTTAGTAAACTCAAAATCCGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>TWAATTTCTTTCTGTTTACTGTTCCACTCTTGATTTATCTTTTTTTCTGATTATTTTAGTAAACTCAAAATCCGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36278</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>222246</contig_pos>
        <strand></strand>
        <context>TCATGTCCTC[T/C]ACCTCGACCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCTGATTATTTTAGTAAACTCAAAATCCGAATTTCCAGGATCATGTCCTC</left_flank>
        <right_flank>ACCTCGACCTCGGATGACAAATCCTCTTCCACAGAAAAACGTGAAAAACC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAACCAGCCATCCCCCATTCTGGGGTCGAGCACCAAGTAGGCGCCCTTCCACGTGGCATGTCTCCCCAGGATTAAATTTTCCAAAAAAAGATGTCAGCTTCAAAATTAAAGCTCTATTTTTGCTTAGTATACTCAAAAATTTTCAGGCTTATTCAAAAAAGTCAACTTTTTTTTATTTTAAAGTTGACAGTTTTTAACTAAAAGTCGAGTAAAACCTGTACTGTCAAGTTTGAGCTAATTTTTCTTGGTTGCTATGCAAGATATGAAAAACTTGTCAACTTATAAAATATTGATAATATTATGATAAACAATTTATCAGTTGACAATATTATAAGATTTTTGAAAAGAAACGAGATAAATTGGCTCAAAGTCAGGGAGCCTTCTATTACAAATTTTACGGTCGTTAATTTCTTTCTGTTTACTGTTCCACTCTTGATTTATCTTTTTTTCTGATTATTTTAGTAAACTCAAAATCCGAATTTCCAGGATCATGTCCTCTACCTCGACCTCGGATGACAAATCCTCTTCCACAGAAAAACGTGAAAAACCATCGTGTCCCATCGATGAGTACCGTTCTTCATCCAACAAAAAGCCCGAATTCCTGGAGAGCTACGCAGCATTCCGTCGTCCACGTACACCTCCACCAGTGAATACAGATTCAGAAGTGGATTGCACACCTTACGACCATGTACAGTACCGTCCGTTTTGCCAGACAATTCGGTTGAGAAAACGAGCAAAAGCCTACAATAAGCCAAAGAAGCCAAGGATGTCAGTGGTCATTGAGAACTTGTCCATGTTCGAGTGGTTGCATAGAGTTGGAGGTAAGAATTTAAAGGAAAGTTAGGCCACCTGTTATAGGGTGTTTAGGTTAGAAAAGTTAGGCCAGCCCTTAAAAAATCTACGCCAGCCAGAAGAGGTTGATGGAAAGCTAGGTCACTTGTTTGTAGTTCTTAGGCTAGCAAAGTTAAGCCAGTCATTGAAAATAATAAACTTTTTTTT</canonical>
            <polymorphic>GGAACCAGCCATCCCCCATTCTGGGGTCGAGCACCAAGTAGGCGCCCTTCCACGTGGCATGTCTCCCCAGGATTAAATTTTCCAAAAAAAGATGTCAGCTTCAAAATTAAAGCTCTATTTTTGCTTAGTATACTCAAAAATTTTCAGGCTTATTCAAAAAAGTCAACTTTTTTTTATTTTAAAGTTGACAGTTTTTAACTAAAAGTCGAGTAAAACCTGTACTGTCAAGTTTGAGCTAATTTTTCTTGGTTGCTATGCAAGATATGAAAAACTTGTCAACTTATAAAATATTGATAATATTATGATAAACAATTTATCAGTTGACAATATTATAAGATTTTTGAAAAGAAACGAGATAAATTGGCTCAAAGTCAGGGAGCCTTCTATTACAAATTTTACGGTCGTTAATTTCTTTCTGTTTACTGTTCCACTCTTGATTTATCTTTTTTTCTGATTATTTTAGTAAACTCAAAATCCGAATTTCCAGGATCATGTCCTCYACCTCGACCTCGGATGACAAATCCTCTTCCACAGAAAAACGTGAAAAACCATCGTGTCCCATCGATGAGTACCGTTCTTCATCCAACAAAAAGCCCGAATTCCTGGAGAGCTACGCAGCATTCCGTCGTCCACGTACACCTCCACCAGTGAATACAGATTCAGAAGTGGATTGCACACCTTACGACCATGTACAGTACCGTCCGTTTTGCCAGACAATTCGGTTGAGAAAACGAGCAAAAGCCTACAATAAGCCAAAGAAGCCAAGGATGTCAGTGGTCATTGAGAACTTGTCCATGTTCGAGTGGTTGCATAGAGTTGGAGGTAAGAATTTAAAGGAAAGTTAGGCCACCTGTTATAGGGTGTTTAGGTTAGAAAAGTTAGGCCAGCCCTTAAAAAATCTACGCCAGCCAGAAGAGGTTGATGGAAAGCTAGGTCACTTGTTTGTAGTTCTTAGGCTAGCAAAGTTAAGCCAGTCATTGAAAATAATAAACTTTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTACTGTTCCACTCTTGATT</pcr_primer_p1>
		<pcr_primer_p2>CTTCTGAATCTGTATTCACTGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTTTACTGTTCCACTCTTGATTTATCTTTTTTTCTGATTATTTTAGTAAACTCAAAATCCGAATTTCCAGGATCATGTCCTCTACCTCGACCTCGGATGACAAATCCTCTTCCACAGAAAAACGTGAAAAACCATCGTGTCCCATCGATGAGTACCGTTCTTCATCCAACAAAAAGCCCGAATTCCTGGAGAGCTACGCAGCATTCCGTCGTCCACGTACACCTCCACCAGTGAATACAGATTCAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TGTTTACTGTTCCACTCTTGATTTATCTTTTTTTCTGATTATTTTAGTAAACTCAAAATCCGAATTTCCAGGATCATGTCCTCYACCTCGACCTCGGATGACAAATCCTCTTCCACAGAAAAACGTGAAAAACCATCGTGTCCCATCGATGAGTACCGTTCTTCATCCAACAAAAAGCCCGAATTCCTGGAGAGCTACGCAGCATTCCGTCGTCCACGTACACCTCCACCAGTGAATACAGATTCAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36279</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>222312</contig_pos>
        <strand></strand>
        <context>GTCCCATCGA[T/C]GAGTACCGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GACAAATCCTCTTCCACAGAAAAACGTGAAAAACCATCGTGTCCCATCGA</left_flank>
        <right_flank>GAGTACCGTTCTTCATCCAACAAAAAGCCCGAATTCCTGGAGAGCTACGC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGGATTAAATTTTCCAAAAAAAGATGTCAGCTTCAAAATTAAAGCTCTATTTTTGCTTAGTATACTCAAAAATTTTCAGGCTTATTCAAAAAAGTCAACTTTTTTTTATTTTAAAGTTGACAGTTTTTAACTAAAAGTCGAGTAAAACCTGTACTGTCAAGTTTGAGCTAATTTTTCTTGGTTGCTATGCAAGATATGAAAAACTTGTCAACTTATAAAATATTGATAATATTATGATAAACAATTTATCAGTTGACAATATTATAAGATTTTTGAAAAGAAACGAGATAAATTGGCTCAAAGTCAGGGAGCCTTCTATTACAAATTTTACGGTCGTTAATTTCTTTCTGTTTACTGTTCCACTCTTGATTTATCTTTTTTTCTGATTATTTTAGTAAACTCAAAATCCGAATTTCCAGGATCATGTCCTCTACCTCGACCTCGGATGACAAATCCTCTTCCACAGAAAAACGTGAAAAACCATCGTGTCCCATCGATGAGTACCGTTCTTCATCCAACAAAAAGCCCGAATTCCTGGAGAGCTACGCAGCATTCCGTCGTCCACGTACACCTCCACCAGTGAATACAGATTCAGAAGTGGATTGCACACCTTACGACCATGTACAGTACCGTCCGTTTTGCCAGACAATTCGGTTGAGAAAACGAGCAAAAGCCTACAATAAGCCAAAGAAGCCAAGGATGTCAGTGGTCATTGAGAACTTGTCCATGTTCGAGTGGTTGCATAGAGTTGGAGGTAAGAATTTAAAGGAAAGTTAGGCCACCTGTTATAGGGTGTTTAGGTTAGAAAAGTTAGGCCAGCCCTTAAAAAATCTACGCCAGCCAGAAGAGGTTGATGGAAAGCTAGGTCACTTGTTTGTAGTTCTTAGGCTAGCAAAGTTAAGCCAGTCATTGAAAATAATAAACTTTTTTTTGATTTGATAGGCCAGCAAAAAGAGTAGTTGAGGGGAAAGCTAGATCATCGATTTGGGTTCCTAGTC</canonical>
            <polymorphic>CCAGGATTAAATTTTCCAAAAAAAGATGTCAGCTTCAAAATTAAAGCTCTATTTTTGCTTAGTATACTCAAAAATTTTCAGGCTTATTCAAAAAAGTCAACTTTTTTTTATTTTAAAGTTGACAGTTTTTAACTAAAAGTCGAGTAAAACCTGTACTGTCAAGTTTGAGCTAATTTTTCTTGGTTGCTATGCAAGATATGAAAAACTTGTCAACTTATAAAATATTGATAATATTATGATAAACAATTTATCAGTTGACAATATTATAAGATTTTTGAAAAGAAACGAGATAAATTGGCTCAAAGTCAGGGAGCCTTCTATTACAAATTTTACGGTCGTTAATTTCTTTCTGTTTACTGTTCCACTCTTGATTTATCTTTTTTTCTGATTATTTTAGTAAACTCAAAATCCGAATTTCCAGGATCATGTCCTCTACCTCGACCTCGGATGACAAATCCTCTTCCACAGAAAAACGTGAAAAACCATCGTGTCCCATCGAYGAGTACCGTTCTTCATCCAACAAAAAGCCCGAATTCCTGGAGAGCTACGCAGCATTCCGTCGTCCACGTACACCTCCACCAGTGAATACAGATTCAGAAGTGGATTGCACACCTTACGACCATGTACAGTACCGTCCGTTTTGCCAGACAATTCGGTTGAGAAAACGAGCAAAAGCCTACAATAAGCCAAAGAAGCCAAGGATGTCAGTGGTCATTGAGAACTTGTCCATGTTCGAGTGGTTGCATAGAGTTGGAGGTAAGAATTTAAAGGAAAGTTAGGCCACCTGTTATAGGGTGTTTAGGTTAGAAAAGTTAGGCCAGCCCTTAAAAAATCTACGCCAGCCAGAAGAGGTTGATGGAAAGCTAGGTCACTTGTTTGTAGTTCTTAGGCTAGCAAAGTTAAGCCAGTCATTGAAAATAATAAACTTTTTTTTGATTTGATAGGCCAGCAAAAAGAGTAGTTGAGGGGAAAGCTAGATCATCGATTTGGGTTCCTAGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>496 486 18</canonical_bands>
                <polymorphic_bands>982 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTTACTGTTCCACTCTTGATT</pcr_primer_p1>
		<pcr_primer_p2>CTTCTGAATCTGTATTCACTGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTTTACTGTTCCACTCTTGATTTATCTTTTTTTCTGATTATTTTAGTAAACTCAAAATCCGAATTTCCAGGATCATGTCCTCTACCTCGACCTCGGATGACAAATCCTCTTCCACAGAAAAACGTGAAAAACCATCGTGTCCCATCGATGAGTACCGTTCTTCATCCAACAAAAAGCCCGAATTCCTGGAGAGCTACGCAGCATTCCGTCGTCCACGTACACCTCCACCAGTGAATACAGATTCAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TGTTTACTGTTCCACTCTTGATTTATCTTTTTTTCTGATTATTTTAGTAAACTCAAAATCCGAATTTCCAGGATCATGTCCTCTACCTCGACCTCGGATGACAAATCCTCTTCCACAGAAAAACGTGAAAAACCATCGTGTCCCATCGAYGAGTACCGTTCTTCATCCAACAAAAAGCCCGAATTCCTGGAGAGCTACGCAGCATTCCGTCGTCCACGTACACCTCCACCAGTGAATACAGATTCAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36280</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>222456</contig_pos>
        <strand></strand>
        <context>GTCCGTTTTG[C/T]CAGACAATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGAAGTGGATTGCACACCTTACGACCATGTACAGTACCGTCCGTTTTG</left_flank>
        <right_flank>CAGACAATTCGGTTGAGAAAACGAGCAAAAGCCTACAATAAGCCAAAGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAACCTGTACTGTCAAGTTTGAGCTAATTTTTCTTGGTTGCTATGCAAGATATGAAAAACTTGTCAACTTATAAAATATTGATAATATTATGATAAACAATTTATCAGTTGACAATATTATAAGATTTTTGAAAAGAAACGAGATAAATTGGCTCAAAGTCAGGGAGCCTTCTATTACAAATTTTACGGTCGTTAATTTCTTTCTGTTTACTGTTCCACTCTTGATTTATCTTTTTTTCTGATTATTTTAGTAAACTCAAAATCCGAATTTCCAGGATCATGTCCTCTACCTCGACCTCGGATGACAAATCCTCTTCCACAGAAAAACGTGAAAAACCATCGTGTCCCATCGATGAGTACCGTTCTTCATCCAACAAAAAGCCCGAATTCCTGGAGAGCTACGCAGCATTCCGTCGTCCACGTACACCTCCACCAGTGAATACAGATTCAGAAGTGGATTGCACACCTTACGACCATGTACAGTACCGTCCGTTTTGCCAGACAATTCGGTTGAGAAAACGAGCAAAAGCCTACAATAAGCCAAAGAAGCCAAGGATGTCAGTGGTCATTGAGAACTTGTCCATGTTCGAGTGGTTGCATAGAGTTGGAGGTAAGAATTTAAAGGAAAGTTAGGCCACCTGTTATAGGGTGTTTAGGTTAGAAAAGTTAGGCCAGCCCTTAAAAAATCTACGCCAGCCAGAAGAGGTTGATGGAAAGCTAGGTCACTTGTTTGTAGTTCTTAGGCTAGCAAAGTTAAGCCAGTCATTGAAAATAATAAACTTTTTTTTGATTTGATAGGCCAGCAAAAAGAGTAGTTGAGGGGAAAGCTAGATCATCGATTTGGGTTCCTAGTCCAGCAAAGTTAAGCTACCCCTTGAAGTACCTAAGCTTTGAGCGGAAACATCTGTTTTTAAGGTGAATTTGTTTGCCTTACTTTTTTAGCACAGTAAATTATGCAAGGATGTCCTTTTTTGCCTCTCTAGCTTTTACTGGCAGGC</canonical>
            <polymorphic>TAAAACCTGTACTGTCAAGTTTGAGCTAATTTTTCTTGGTTGCTATGCAAGATATGAAAAACTTGTCAACTTATAAAATATTGATAATATTATGATAAACAATTTATCAGTTGACAATATTATAAGATTTTTGAAAAGAAACGAGATAAATTGGCTCAAAGTCAGGGAGCCTTCTATTACAAATTTTACGGTCGTTAATTTCTTTCTGTTTACTGTTCCACTCTTGATTTATCTTTTTTTCTGATTATTTTAGTAAACTCAAAATCCGAATTTCCAGGATCATGTCCTCTACCTCGACCTCGGATGACAAATCCTCTTCCACAGAAAAACGTGAAAAACCATCGTGTCCCATCGATGAGTACCGTTCTTCATCCAACAAAAAGCCCGAATTCCTGGAGAGCTACGCAGCATTCCGTCGTCCACGTACACCTCCACCAGTGAATACAGATTCAGAAGTGGATTGCACACCTTACGACCATGTACAGTACCGTCCGTTTTGYCAGACAATTCGGTTGAGAAAACGAGCAAAAGCCTACAATAAGCCAAAGAAGCCAAGGATGTCAGTGGTCATTGAGAACTTGTCCATGTTCGAGTGGTTGCATAGAGTTGGAGGTAAGAATTTAAAGGAAAGTTAGGCCACCTGTTATAGGGTGTTTAGGTTAGAAAAGTTAGGCCAGCCCTTAAAAAATCTACGCCAGCCAGAAGAGGTTGATGGAAAGCTAGGTCACTTGTTTGTAGTTCTTAGGCTAGCAAAGTTAAGCCAGTCATTGAAAATAATAAACTTTTTTTTGATTTGATAGGCCAGCAAAAAGAGTAGTTGAGGGGAAAGCTAGATCATCGATTTGGGTTCCTAGTCCAGCAAAGTTAAGCTACCCCTTGAAGTACCTAAGCTTTGAGCGGAAACATCTGTTTTTAAGGTGAATTTGTTTGCCTTACTTTTTTAGCACAGTAAATTATGCAAGGATGTCCTTTTTTGCCTCTCTAGCTTTTACTGGCAGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCAGTGAATACAGATTCAGAAG</pcr_primer_p1>
		<pcr_primer_p2>GGCCTAACTTTTCTAACCTAAAC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ACCAGTGAATACAGATTCAGAAGTGGATTGCACACCTTACGACCATGTACAGTACCGTCCGTTTTGCCAGACAATTCGGTTGAGAAAACGAGCAAAAGCCTACAATAAGCCAAAGAAGCCAAGGATGTCAGTGGTCATTGAGAACTTGTCCATGTTCGAGTGGTTGCATAGAGTTGGAGGTAAGAATTTAAAGGAAAGTTAGGCCACCTGTTATAGGGTGTTTAGGTTAGAAAAGTTAGGCC</canonical_amplicon>
		<polymorphic_amplicon>ACCAGTGAATACAGATTCAGAAGTGGATTGCACACCTTACGACCATGTACAGTACCGTCCGTTTTGYCAGACAATTCGGTTGAGAAAACGAGCAAAAGCCTACAATAAGCCAAAGAAGCCAAGGATGTCAGTGGTCATTGAGAACTTGTCCATGTTCGAGTGGTTGCATAGAGTTGGAGGTAAGAATTTAAAGGAAAGTTAGGCCACCTGTTATAGGGTGTTTAGGTTAGAAAAGTTAGGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36281</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>224256</contig_pos>
        <strand></strand>
        <context>GTTGGGAGAG[T/C]WGAAAATCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGGACAGTTACAAATCGGTTAGCATAATTTCCATTTCGTAGTTGGGAGAG</left_flank>
        <right_flank>TGAAAATCTGTAAAAGTTTGATATTTAAAGGTGGGGGGACAGGAGATTTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGATCTCTTCTTCTTAAAAAAAACATGGCGGACTTCTCCAATCCTAGGACTTAACCTAAATGTCAACCACTTTCTTTGCTCCCATACATCTGCTCTTTCTATGTTCAACCCAATTTTTCATTTCTCCATCATCTGGGCATTCATCTGGTTCTTCTCACTTTTTTTCTCTCTTTTTTTGCTACCGACCTGGGATACAAAAGAGCCCCCGATGCTTTATTACACCACACTATCCCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAATTTCGGAGGGTCTTTCTGCTCAACAGAAGACACCTGACCTCATGAAATCGGAACAGAGGAAAAACAGTATGTGAGAGATGAGATGGAAAGAGAGGGGGGACCATTTGTGCAACAGGAGGTAGATGTTTGTGTGTTCGAAGAAGAGATGGGTTTCTGAGGAAGAAGGATGACAGGGGGACAGTTACAAATCGGTTAGCATAATTTCCATTTCGTAGTTGGGAGAGTTGAAAATCTGTAAAAGTTTGATATTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGCGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACTGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCATCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAGCATTATTTTTTCATGTCCCCCCACCTTTAACGTCAAACTTCTTTTTTTTTAAAGATCGGTGCGCTCATTTTTATGGAAAATTTCATTTAAAAAATTTCGAAAAAATAAGAAAATTTCACGTATCACCAAATATTTTTTGGATAATTGAGAAAATTAATTTTTTCAAATCATTTTAAATTTATCGTAAATTGCAATTCCGAAAGTCTCGAAATCGCCTGGGACTTGAAAATTC</canonical>
            <polymorphic>TTCGATCTCTTCTTCTTAAAAAAAACATGGCGGACTTCTCCAATCCTAGGACTTAACCTAAATGTCAACCACTTTCTTTGCTCCCATACATCTGCTCTTTCTATGTTCAACCCAATTTTTCATTTCTCCATCATCTGGGCATTCATCTGGTTCTTCTCACTTTTTTTCTCTCTTTTTTTGCTACCGACCTGGGATACAAAAGAGCCCCCGATGCTTTATTACACCACACTATCCCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAATTTCGGAGGGTCTTTCTGCTCAACAGAAGACACCTGACCTCATGAAATCGGAACAGAGGAAAAACAGTATGTGAGAGATGAGATGGAAAGAGAGGGGGGACCATTTGTGCAACAGGAGGTAGATGTTTGTGTGTTCGAAGAAGAGATGGGTTTCTGAGGAAGAAGGATGACAGGGGGACAGTTACAAATCGGTTAGCATAATTTCCATTTCGTAGTTGGGAGAGYTGAAAATCTGTAAAAGTTTGATATTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGCGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACTGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCATCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAGCATTATTTTTTCATGTCCCCCCACCTTTAACGTCAAACTTCTTTTTTTTTAAAGATCGGTGCGCTCATTTTTATGGAAAATTTCATTTAAAAAATTTCGAAAAAATAAGAAAATTTCACGTATCACCAAATATTTTTTGGATAATTGAGAAAATTAATTTTTTCAAATCATTTTAAATTTATCGTAAATTGCAATTCCGAAAGTCTCGAAATCGCCTGGGACTTGAAAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGAAAAACAGTATGTGAGAGA</pcr_primer_p1>
		<pcr_primer_p2>ATGCATACGCTAGCTACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGGAAAAACAGTATGTGAGAGATGAGATGGAAAGAGAGGGGGGACCATTTGTGCAACAGGAGGTAGATGTTTGTGTGTTCGAAGAAGAGATGGGTTTCTGAGGAAGAAGGATGACAGGGGGACAGTTACAAATCGGTTAGCATAATTTCCATTTCGTAGTTGGGAGAGTTGAAAATCTGTAAAAGTTTGATATTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGCGTATGCAT</canonical_amplicon>
		<polymorphic_amplicon>GAGGAAAAACAGTATGTGAGAGATGAGATGGAAAGAGAGGGGGGACCATTTGTGCAACAGGAGGTAGATGTTTGTGTGTTCGAAGAAGAGATGGGTTTCTGAGGAAGAAGGATGACAGGGGGACAGTTACAAATCGGTTAGCATAATTTCCATTTCGTAGTTGGGAGAGYTGAAAATCTGTAAAAGTTTGATATTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGCGTATGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36282</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>224257</contig_pos>
        <strand></strand>
        <context>TTGGGAGAGY[T/A]GAAAATCTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GGACAGTTACAAATCGGTTAGCATAATTTCCATTTCGTAGTTGGGAGAGT</left_flank>
        <right_flank>GAAAATCTGTAAAAGTTTGATATTTAAAGGTGGGGGGACAGGAGATTTTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGATCTCTTCTTCTTAAAAAAAACATGGCGGACTTCTCCAATCCTAGGACTTAACCTAAATGTCAACCACTTTCTTTGCTCCCATACATCTGCTCTTTCTATGTTCAACCCAATTTTTCATTTCTCCATCATCTGGGCATTCATCTGGTTCTTCTCACTTTTTTTCTCTCTTTTTTTGCTACCGACCTGGGATACAAAAGAGCCCCCGATGCTTTATTACACCACACTATCCCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAATTTCGGAGGGTCTTTCTGCTCAACAGAAGACACCTGACCTCATGAAATCGGAACAGAGGAAAAACAGTATGTGAGAGATGAGATGGAAAGAGAGGGGGGACCATTTGTGCAACAGGAGGTAGATGTTTGTGTGTTCGAAGAAGAGATGGGTTTCTGAGGAAGAAGGATGACAGGGGGACAGTTACAAATCGGTTAGCATAATTTCCATTTCGTAGTTGGGAGAGTTGAAAATCTGTAAAAGTTTGATATTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGCGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACTGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCATCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAGCATTATTTTTTCATGTCCCCCCACCTTTAACGTCAAACTTCTTTTTTTTTAAAGATCGGTGCGCTCATTTTTATGGAAAATTTCATTTAAAAAATTTCGAAAAAATAAGAAAATTTCACGTATCACCAAATATTTTTTGGATAATTGAGAAAATTAATTTTTTCAAATCATTTTAAATTTATCGTAAATTGCAATTCCGAAAGTCTCGAAATCGCCTGGGACTTGAAAATTCA</canonical>
            <polymorphic>TCGATCTCTTCTTCTTAAAAAAAACATGGCGGACTTCTCCAATCCTAGGACTTAACCTAAATGTCAACCACTTTCTTTGCTCCCATACATCTGCTCTTTCTATGTTCAACCCAATTTTTCATTTCTCCATCATCTGGGCATTCATCTGGTTCTTCTCACTTTTTTTCTCTCTTTTTTTGCTACCGACCTGGGATACAAAAGAGCCCCCGATGCTTTATTACACCACACTATCCCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAATTTCGGAGGGTCTTTCTGCTCAACAGAAGACACCTGACCTCATGAAATCGGAACAGAGGAAAAACAGTATGTGAGAGATGAGATGGAAAGAGAGGGGGGACCATTTGTGCAACAGGAGGTAGATGTTTGTGTGTTCGAAGAAGAGATGGGTTTCTGAGGAAGAAGGATGACAGGGGGACAGTTACAAATCGGTTAGCATAATTTCCATTTCGTAGTTGGGAGAGTWGAAAATCTGTAAAAGTTTGATATTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGCGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGCGTACTGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCATCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGGCATCTTTGAACGGAATTTCGAGAGCATTATTTTTTCATGTCCCCCCACCTTTAACGTCAAACTTCTTTTTTTTTAAAGATCGGTGCGCTCATTTTTATGGAAAATTTCATTTAAAAAATTTCGAAAAAATAAGAAAATTTCACGTATCACCAAATATTTTTTGGATAATTGAGAAAATTAATTTTTTCAAATCATTTTAAATTTATCGTAAATTGCAATTCCGAAAGTCTCGAAATCGCCTGGGACTTGAAAATTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGAAAAACAGTATGTGAGAGA</pcr_primer_p1>
		<pcr_primer_p2>ATGCATACGCTAGCTACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAGGAAAAACAGTATGTGAGAGATGAGATGGAAAGAGAGGGGGGACCATTTGTGCAACAGGAGGTAGATGTTTGTGTGTTCGAAGAAGAGATGGGTTTCTGAGGAAGAAGGATGACAGGGGGACAGTTACAAATCGGTTAGCATAATTTCCATTTCGTAGTTGGGAGAGTTGAAAATCTGTAAAAGTTTGATATTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGCGTATGCAT</canonical_amplicon>
		<polymorphic_amplicon>GAGGAAAAACAGTATGTGAGAGATGAGATGGAAAGAGAGGGGGGACCATTTGTGCAACAGGAGGTAGATGTTTGTGTGTTCGAAGAAGAGATGGGTTTCTGAGGAAGAAGGATGACAGGGGGACAGTTACAAATCGGTTAGCATAATTTCCATTTCGTAGTTGGGAGAGTWGAAAATCTGTAAAAGTTTGATATTTAAAGGTGGGGGGACAGGAGATTTTTCGTAGTTTTTTTGTAGCTAGCGTATGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36283</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>227330</contig_pos>
        <strand>+</strand>
        <context>TTCTCTAGAA[G/T]WTATTCATAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACGTCGACACCGAATCGTCACGACAACGACGACTACTTCTTTCTCTAGAA</left_flank>
        <right_flank>TTATTCATAATTCAGAAGTTGTCTAACTAATTTTAACTTGCGAATTAGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCTATTTGTGTGTCGGTGTGTCTAGAATTCCCAACTTTGCCGCTTTTCCAAGTGGTACATTGATGATTTCAGTGTGTTGGGAATCGGATCGTTCTGGTTTCATTTCCTTTGGGTCGCGTGGTTTCCGGTTTGGTTTTCGGCCACGCATGATTCGAATTGAATCCATTCTGGAAGGTTTTTAAAGTTTAGGAGATTCAGAACTACAATCCGAAAATCCTTAATTCTTAAAATTTTAAAATCTCGGAATTTTTGAATTTCCGAATTTTAATATTTTTACATTTTAACAATTCAAGATTCTAGAATTCAGATCAAAAATTTCAGGAAAAATTATCTCAAGCTTCAAAACTGACGTATCCCCTCTCCGACTCTTCTGACTCATTTCACTGCGTTTTACCGCCATTTCCTTCTCGGTCTGAACTTCCACTTGTGATCCATTCTGTTTTTGGGACGTCGACACCGAATCGTCACGACAACGACGACTACTTCTTTCTCTAGAATTTATTCATAATTCAGAAGTTGTCTAACTAATTTTAACTTGCGAATTAGAATACCTGGTAGACGAAACTCTCTGAGCGCATGAGACAAAAATGAGGGTGGGAAGAAGGAAGAAGAGAATAAATGCAAGATGTTCAATAATTGCGAAATCCCAGAAAATGAGCATTTGTATTTTTCAACCTTGGGCAGGGAAATGAAGAAATGAAGGGTTTTGGAGGCACTTCAGGAAAAAAGTATAAGAAAAAAAGCTGGGGTAAAATACCCTACAAAGTCAGAAACCTAGTAAAACAAACTTCACGTGGAAAAATTATTTTTTTTGCAAGGAATTTTAGAAAACAAGAAAATGGGACTGTTTAGTATGCCAATTTTGAGTCCGCCATTTTCTTCCTTTAAATCGAGTAAGGATCACGTACCCCCATTTTTGACATTTTATGAAACTTTTCTCAAAATAATTCTAACTAGGTCAGTTCCGGTCCGTTTTGGCTGATTCTTTCTTCTATCGA</canonical>
            <polymorphic>AATCTATTTGTGTGTCGGTGTGTCTAGAATTCCCAACTTTGCCGCTTTTCCAAGTGGTACATTGATGATTTCAGTGTGTTGGGAATCGGATCGTTCTGGTTTCATTTCCTTTGGGTCGCGTGGTTTCCGGTTTGGTTTTCGGCCACGCATGATTCGAATTGAATCCATTCTGGAAGGTTTTTAAAGTTTAGGAGATTCAGAACTACAATCCGAAAATCCTTAATTCTTAAAATTTTAAAATCTCGGAATTTTTGAATTTCCGAATTTTAATATTTTTACATTTTAACAATTCAAGATTCTAGAATTCAGATCAAAAATTTCAGGAAAAATTATCTCAAGCTTCAAAACTGACGTATCCCCTCTCCGACTCTTCTGACTCATTTCACTGCGTTTTACCGCCATTTCCTTCTCGGTCTGAACTTCCACTTGTGATCCATTCTGTTTTTGGGACGTCGACACCGAATCGTCACGACAACGACGACTACTTCTTTCTCTAGAAKTTATTCATAATTCAGAAGTTGTCTAACTAATTTTAACTTGCGAATTAGAATACCTGGTAGACGAAACTCTCTGAGCGCATGAGACAAAAATGAGGGTGGGAAGAAGGAAGAAGAGAATAAATGCAAGATGTTCAATAATTGCGAAATCCCAGAAAATGAGCATTTGTATTTTTCAACCTTGGGCAGGGAAATGAAGAAATGAAGGGTTTTGGAGGCACTTCAGGAAAAAAGTATAAGAAAAAAAGCTGGGGTAAAATACCCTACAAAGTCAGAAACCTAGTAAAACAAACTTCACGTGGAAAAATTATTTTTTTTGCAAGGAATTTTAGAAAACAAGAAAATGGGACTGTTTAGTATGCCAATTTTGAGTCCGCCATTTTCTTCCTTTAAATCGAGTAAGGATCACGTACCCCCATTTTTGACATTTTATGAAACTTTTCTCAAAATAATTCTAACTAGGTCAGTTCCGGTCCGTTTTGGCTGATTCTTTCTTCTATCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>324 203 182 179 40 27 16 13 8 8</canonical_bands>
                <polymorphic_bands>506 203 179 40 27 16 13 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>170 166 129 94 87 65 53 39 27 25 20 19 16 15 14 13 12 11 9 8 8</canonical_bands>
                <polymorphic_bands>181 166 129 94 87 65 53 39 27 25 20 19 16 15 14 13 12 9 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTATCTCAAGCTTCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GAGAGTTTCGTCTACCAGGTATT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTATCTCAAGCTTCAAAACTGACGTATCCCCTCTCCGACTCTTCTGACTCATTTCACTGCGTTTTACCGCCATTTCCTTCTCGGTCTGAACTTCCACTTGTGATCCATTCTGTTTTTGGGACGTCGACACCGAATCGTCACGACAACGACGACTACTTCTTTCTCTAGAATTTATTCATAATTCAGAAGTTGTCTAACTAATTTTAACTTGCGAATTAGAATACCTGGTAGACGAAACTCTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTATCTCAAGCTTCAAAACTGACGTATCCCCTCTCCGACTCTTCTGACTCATTTCACTGCGTTTTACCGCCATTTCCTTCTCGGTCTGAACTTCCACTTGTGATCCATTCTGTTTTTGGGACGTCGACACCGAATCGTCACGACAACGACGACTACTTCTTTCTCTAGAAKTTATTCATAATTCAGAAGTTGTCTAACTAATTTTAACTTGCGAATTAGAATACCTGGTAGACGAAACTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36284</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>227331</contig_pos>
        <strand>+</strand>
        <context>TCTCTAGAAK[A/T]TATTCATAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGTCGACACCGAATCGTCACGACAACGACGACTACTTCTTTCTCTAGAAT</left_flank>
        <right_flank>TATTCATAATTCAGAAGTTGTCTAACTAATTTTAACTTGCGAATTAGAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTATTTGTGTGTCGGTGTGTCTAGAATTCCCAACTTTGCCGCTTTTCCAAGTGGTACATTGATGATTTCAGTGTGTTGGGAATCGGATCGTTCTGGTTTCATTTCCTTTGGGTCGCGTGGTTTCCGGTTTGGTTTTCGGCCACGCATGATTCGAATTGAATCCATTCTGGAAGGTTTTTAAAGTTTAGGAGATTCAGAACTACAATCCGAAAATCCTTAATTCTTAAAATTTTAAAATCTCGGAATTTTTGAATTTCCGAATTTTAATATTTTTACATTTTAACAATTCAAGATTCTAGAATTCAGATCAAAAATTTCAGGAAAAATTATCTCAAGCTTCAAAACTGACGTATCCCCTCTCCGACTCTTCTGACTCATTTCACTGCGTTTTACCGCCATTTCCTTCTCGGTCTGAACTTCCACTTGTGATCCATTCTGTTTTTGGGACGTCGACACCGAATCGTCACGACAACGACGACTACTTCTTTCTCTAGAATTTATTCATAATTCAGAAGTTGTCTAACTAATTTTAACTTGCGAATTAGAATACCTGGTAGACGAAACTCTCTGAGCGCATGAGACAAAAATGAGGGTGGGAAGAAGGAAGAAGAGAATAAATGCAAGATGTTCAATAATTGCGAAATCCCAGAAAATGAGCATTTGTATTTTTCAACCTTGGGCAGGGAAATGAAGAAATGAAGGGTTTTGGAGGCACTTCAGGAAAAAAGTATAAGAAAAAAAGCTGGGGTAAAATACCCTACAAAGTCAGAAACCTAGTAAAACAAACTTCACGTGGAAAAATTATTTTTTTTGCAAGGAATTTTAGAAAACAAGAAAATGGGACTGTTTAGTATGCCAATTTTGAGTCCGCCATTTTCTTCCTTTAAATCGAGTAAGGATCACGTACCCCCATTTTTGACATTTTATGAAACTTTTCTCAAAATAATTCTAACTAGGTCAGTTCCGGTCCGTTTTGGCTGATTCTTTCTTCTATCGAT</canonical>
            <polymorphic>ATCTATTTGTGTGTCGGTGTGTCTAGAATTCCCAACTTTGCCGCTTTTCCAAGTGGTACATTGATGATTTCAGTGTGTTGGGAATCGGATCGTTCTGGTTTCATTTCCTTTGGGTCGCGTGGTTTCCGGTTTGGTTTTCGGCCACGCATGATTCGAATTGAATCCATTCTGGAAGGTTTTTAAAGTTTAGGAGATTCAGAACTACAATCCGAAAATCCTTAATTCTTAAAATTTTAAAATCTCGGAATTTTTGAATTTCCGAATTTTAATATTTTTACATTTTAACAATTCAAGATTCTAGAATTCAGATCAAAAATTTCAGGAAAAATTATCTCAAGCTTCAAAACTGACGTATCCCCTCTCCGACTCTTCTGACTCATTTCACTGCGTTTTACCGCCATTTCCTTCTCGGTCTGAACTTCCACTTGTGATCCATTCTGTTTTTGGGACGTCGACACCGAATCGTCACGACAACGACGACTACTTCTTTCTCTAGAATWTATTCATAATTCAGAAGTTGTCTAACTAATTTTAACTTGCGAATTAGAATACCTGGTAGACGAAACTCTCTGAGCGCATGAGACAAAAATGAGGGTGGGAAGAAGGAAGAAGAGAATAAATGCAAGATGTTCAATAATTGCGAAATCCCAGAAAATGAGCATTTGTATTTTTCAACCTTGGGCAGGGAAATGAAGAAATGAAGGGTTTTGGAGGCACTTCAGGAAAAAAGTATAAGAAAAAAAGCTGGGGTAAAATACCCTACAAAGTCAGAAACCTAGTAAAACAAACTTCACGTGGAAAAATTATTTTTTTTGCAAGGAATTTTAGAAAACAAGAAAATGGGACTGTTTAGTATGCCAATTTTGAGTCCGCCATTTTCTTCCTTTAAATCGAGTAAGGATCACGTACCCCCATTTTTGACATTTTATGAAACTTTTCTCAAAATAATTCTAACTAGGTCAGTTCCGGTCCGTTTTGGCTGATTCTTTCTTCTATCGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>324 203 182 180 40 26 16 13 8 8</canonical_bands>
                <polymorphic_bands>506 203 180 40 26 16 13 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>170 166 129 94 87 65 54 39 26 25 20 19 16 15 14 13 12 11 9 8 8</canonical_bands>
                <polymorphic_bands>181 166 129 94 87 65 54 39 26 25 20 19 16 15 14 13 12 9 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTATCTCAAGCTTCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GAGAGTTTCGTCTACCAGGTATT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTATCTCAAGCTTCAAAACTGACGTATCCCCTCTCCGACTCTTCTGACTCATTTCACTGCGTTTTACCGCCATTTCCTTCTCGGTCTGAACTTCCACTTGTGATCCATTCTGTTTTTGGGACGTCGACACCGAATCGTCACGACAACGACGACTACTTCTTTCTCTAGAATTTATTCATAATTCAGAAGTTGTCTAACTAATTTTAACTTGCGAATTAGAATACCTGGTAGACGAAACTCTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTATCTCAAGCTTCAAAACTGACGTATCCCCTCTCCGACTCTTCTGACTCATTTCACTGCGTTTTACCGCCATTTCCTTCTCGGTCTGAACTTCCACTTGTGATCCATTCTGTTTTTGGGACGTCGACACCGAATCGTCACGACAACGACGACTACTTCTTTCTCTAGAATWTATTCATAATTCAGAAGTTGTCTAACTAATTTTAACTTGCGAATTAGAATACCTGGTAGACGAAACTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36285</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>227551</contig_pos>
        <strand>+</strand>
        <context>GGAGGCACTT[C/T]AGGAAAAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCAACCTTGGGCAGGGAAATGAAGAAATGAAGGGTTTTGGAGGCACTT</left_flank>
        <right_flank>AGGAAAAAAGTATAAGAAAAAAAGCTGGGGTAAAATACCCTACAAAGTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTCTTAAAATTTTAAAATCTCGGAATTTTTGAATTTCCGAATTTTAATATTTTTACATTTTAACAATTCAAGATTCTAGAATTCAGATCAAAAATTTCAGGAAAAATTATCTCAAGCTTCAAAACTGACGTATCCCCTCTCCGACTCTTCTGACTCATTTCACTGCGTTTTACCGCCATTTCCTTCTCGGTCTGAACTTCCACTTGTGATCCATTCTGTTTTTGGGACGTCGACACCGAATCGTCACGACAACGACGACTACTTCTTTCTCTAGAATTTATTCATAATTCAGAAGTTGTCTAACTAATTTTAACTTGCGAATTAGAATACCTGGTAGACGAAACTCTCTGAGCGCATGAGACAAAAATGAGGGTGGGAAGAAGGAAGAAGAGAATAAATGCAAGATGTTCAATAATTGCGAAATCCCAGAAAATGAGCATTTGTATTTTTCAACCTTGGGCAGGGAAATGAAGAAATGAAGGGTTTTGGAGGCACTTCAGGAAAAAAGTATAAGAAAAAAAGCTGGGGTAAAATACCCTACAAAGTCAGAAACCTAGTAAAACAAACTTCACGTGGAAAAATTATTTTTTTTGCAAGGAATTTTAGAAAACAAGAAAATGGGACTGTTTAGTATGCCAATTTTGAGTCCGCCATTTTCTTCCTTTAAATCGAGTAAGGATCACGTACCCCCATTTTTGACATTTTATGAAACTTTTCTCAAAATAATTCTAACTAGGTCAGTTCCGGTCCGTTTTGGCTGATTCTTTCTTCTATCGATAGAAAATCTCTGTGGCTATCCGGTTGCCAAAAATCGTCAAAAGTTGAACCGGCTGAACCAAGTTATGATTGAAAACGGACGAGTGGATACGGTTTTTTTTCCACGTTTTCCGTTTTTTCTGCCGAACTAGGGCCTAAATGAAAAATCCGGCTTTCCCATTCGATCCGTAATTTTGATAGCTATGTTGACAAAAAATATTAATAGGTTTTGAGTGAAATGT</canonical>
            <polymorphic>AATTCTTAAAATTTTAAAATCTCGGAATTTTTGAATTTCCGAATTTTAATATTTTTACATTTTAACAATTCAAGATTCTAGAATTCAGATCAAAAATTTCAGGAAAAATTATCTCAAGCTTCAAAACTGACGTATCCCCTCTCCGACTCTTCTGACTCATTTCACTGCGTTTTACCGCCATTTCCTTCTCGGTCTGAACTTCCACTTGTGATCCATTCTGTTTTTGGGACGTCGACACCGAATCGTCACGACAACGACGACTACTTCTTTCTCTAGAATTTATTCATAATTCAGAAGTTGTCTAACTAATTTTAACTTGCGAATTAGAATACCTGGTAGACGAAACTCTCTGAGCGCATGAGACAAAAATGAGGGTGGGAAGAAGGAAGAAGAGAATAAATGCAAGATGTTCAATAATTGCGAAATCCCAGAAAATGAGCATTTGTATTTTTCAACCTTGGGCAGGGAAATGAAGAAATGAAGGGTTTTGGAGGCACTTYAGGAAAAAAGTATAAGAAAAAAAGCTGGGGTAAAATACCCTACAAAGTCAGAAACCTAGTAAAACAAACTTCACGTGGAAAAATTATTTTTTTTGCAAGGAATTTTAGAAAACAAGAAAATGGGACTGTTTAGTATGCCAATTTTGAGTCCGCCATTTTCTTCCTTTAAATCGAGTAAGGATCACGTACCCCCATTTTTGACATTTTATGAAACTTTTCTCAAAATAATTCTAACTAGGTCAGTTCCGGTCCGTTTTGGCTGATTCTTTCTTCTATCGATAGAAAATCTCTGTGGCTATCCGGTTGCCAAAAATCGTCAAAAGTTGAACCGGCTGAACCAAGTTATGATTGAAAACGGACGAGTGGATACGGTTTTTTTTCCACGTTTTCCGTTTTTTCTGCCGAACTAGGGCCTAAATGAAAAATCCGGCTTTCCCATTCGATCCGTAATTTTGATAGCTATGTTGACAAAAAATATTAATAGGTTTTGAGTGAAATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>500 227 147 71 26 22 7</canonical_bands>
                <polymorphic_bands>727 147 71 26 22 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAAGAGAATAAATGCAAGATG</pcr_primer_p1>
		<pcr_primer_p2>TACTAAACAGTCCCATTTTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGAAGAGAATAAATGCAAGATGTTCAATAATTGCGAAATCCCAGAAAATGAGCATTTGTATTTTTCAACCTTGGGCAGGGAAATGAAGAAATGAAGGGTTTTGGAGGCACTTCAGGAAAAAAGTATAAGAAAAAAAGCTGGGGTAAAATACCCTACAAAGTCAGAAACCTAGTAAAACAAACTTCACGTGGAAAAATTATTTTTTTTGCAAGGAATTTTAGAAAACAAGAAAATGGGACTGTTTAGTA</canonical_amplicon>
		<polymorphic_amplicon>AAGAAGAGAATAAATGCAAGATGTTCAATAATTGCGAAATCCCAGAAAATGAGCATTTGTATTTTTCAACCTTGGGCAGGGAAATGAAGAAATGAAGGGTTTTGGAGGCACTTYAGGAAAAAAGTATAAGAAAAAAAGCTGGGGTAAAATACCCTACAAAGTCAGAAACCTAGTAAAACAAACTTCACGTGGAAAAATTATTTTTTTTGCAAGGAATTTTAGAAAACAAGAAAATGGGACTGTTTAGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36286</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>227707</contig_pos>
        <strand></strand>
        <context>GAGTccgcca[T/C]wttcttcctt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAGAAAACAAGAAAATGGGACTGTTTAGTATGCCAATTTTGAGTCCGCCA</left_flank>
        <right_flank>TTTCTTCCTTTAAATCGAGTAAGGATCACGTACCCCCATTTTTGACATTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATTTCACTGCGTTTTACCGCCATTTCCTTCTCGGTCTGAACTTCCACTTGTGATCCATTCTGTTTTTGGGACGTCGACACCGAATCGTCACGACAACGACGACTACTTCTTTCTCTAGAATTTATTCATAATTCAGAAGTTGTCTAACTAATTTTAACTTGCGAATTAGAATACCTGGTAGACGAAACTCTCTGAGCGCATGAGACAAAAATGAGGGTGGGAAGAAGGAAGAAGAGAATAAATGCAAGATGTTCAATAATTGCGAAATCCCAGAAAATGAGCATTTGTATTTTTCAACCTTGGGCAGGGAAATGAAGAAATGAAGGGTTTTGGAGGCACTTCAGGAAAAAAGTATAAGAAAAAAAGCTGGGGTAAAATACCCTACAAAGTCAGAAACCTAGTAAAACAAACTTCACGTGGAAAAATTATTTTTTTTGCAAGGAATTTTAGAAAACAAGAAAATGGGACTGTTTAGTATGCCAATTTTGAGTCCGCCATTTTCTTCCTTTAAATCGAGTAAGGATCACGTACCCCCATTTTTGACATTTTATGAAACTTTTCTCAAAATAATTCTAACTAGGTCAGTTCCGGTCCGTTTTGGCTGATTCTTTCTTCTATCGATAGAAAATCTCTGTGGCTATCCGGTTGCCAAAAATCGTCAAAAGTTGAACCGGCTGAACCAAGTTATGATTGAAAACGGACGAGTGGATACGGTTTTTTTTCCACGTTTTCCGTTTTTTCTGCCGAACTAGGGCCTAAATGAAAAATCCGGCTTTCCCATTCGATCCGTAATTTTGATAGCTATGTTGACAAAAAATATTAATAGGTTTTGAGTGAAATGTTCGAAATTCCGAGGGACCAGCTTCCACCTCTTGGGACGCGAGAACCGCTGGATAGATTGCTTTAATTTTTTGTCTCACCCTAAAAGAAGATCCTTAATTTTATTTTATGGTTTCAGATTTTTTTTCAGGTACGCTGGTTCTTGAGAAGTAGGTGGA</canonical>
            <polymorphic>TCATTTCACTGCGTTTTACCGCCATTTCCTTCTCGGTCTGAACTTCCACTTGTGATCCATTCTGTTTTTGGGACGTCGACACCGAATCGTCACGACAACGACGACTACTTCTTTCTCTAGAATTTATTCATAATTCAGAAGTTGTCTAACTAATTTTAACTTGCGAATTAGAATACCTGGTAGACGAAACTCTCTGAGCGCATGAGACAAAAATGAGGGTGGGAAGAAGGAAGAAGAGAATAAATGCAAGATGTTCAATAATTGCGAAATCCCAGAAAATGAGCATTTGTATTTTTCAACCTTGGGCAGGGAAATGAAGAAATGAAGGGTTTTGGAGGCACTTCAGGAAAAAAGTATAAGAAAAAAAGCTGGGGTAAAATACCCTACAAAGTCAGAAACCTAGTAAAACAAACTTCACGTGGAAAAATTATTTTTTTTGCAAGGAATTTTAGAAAACAAGAAAATGGGACTGTTTAGTATGCCAATTTTGAGTCCGCCAYTTTCTTCCTTTAAATCGAGTAAGGATCACGTACCCCCATTTTTGACATTTTATGAAACTTTTCTCAAAATAATTCTAACTAGGTCAGTTCCGGTCCGTTTTGGCTGATTCTTTCTTCTATCGATAGAAAATCTCTGTGGCTATCCGGTTGCCAAAAATCGTCAAAAGTTGAACCGGCTGAACCAAGTTATGATTGAAAACGGACGAGTGGATACGGTTTTTTTTCCACGTTTTCCGTTTTTTCTGCCGAACTAGGGCCTAAATGAAAAATCCGGCTTTCCCATTCGATCCGTAATTTTGATAGCTATGTTGACAAAAAATATTAATAGGTTTTGAGTGAAATGTTCGAAATTCCGAGGGACCAGCTTCCACCTCTTGGGACGCGAGAACCGCTGGATAGATTGCTTTAATTTTTTGTCTCACCCTAAAAGAAGATCCTTAATTTTATTTTATGGTTTCAGATTTTTTTTCAGGTACGCTGGTTCTTGAGAAGTAGGTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAATTTTAGAAAACAAGAAAATG</pcr_primer_p1>
		<pcr_primer_p2>ATCCAAGGTTCAGTCTGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>901</pcr_amplicon_size>
		<canonical_amplicon>GGAATTTTAGAAAACAAGAAAATGGGACTGTTTAGTATGCCAATTTTGAGTCCGCCATTTTCTTCCTTTAAATCGAGT</canonical_amplicon>
		<polymorphic_amplicon>GGAATTTTAGAAAACAAGAAAATGGGACTGTTTAGTATGCCAATTTTGAGTCCGCCAYTTTCTTCCTTTAAATCGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36287</snp_id>
        <super_contig>c010801331.Contig1</super_contig>
        <contig_pos>227708</contig_pos>
        <strand></strand>
        <context>AGTccgccay[T/A]ttcttccttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGAAAACAAGAAAATGGGACTGTTTAGTATGCCAATTTTGAGTCCGCCAT</left_flank>
        <right_flank>TTCTTCCTTTAAATCGAGTAAGGATCACGTACCCCCATTTTTGACATTTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTCACTGCGTTTTACCGCCATTTCCTTCTCGGTCTGAACTTCCACTTGTGATCCATTCTGTTTTTGGGACGTCGACACCGAATCGTCACGACAACGACGACTACTTCTTTCTCTAGAATTTATTCATAATTCAGAAGTTGTCTAACTAATTTTAACTTGCGAATTAGAATACCTGGTAGACGAAACTCTCTGAGCGCATGAGACAAAAATGAGGGTGGGAAGAAGGAAGAAGAGAATAAATGCAAGATGTTCAATAATTGCGAAATCCCAGAAAATGAGCATTTGTATTTTTCAACCTTGGGCAGGGAAATGAAGAAATGAAGGGTTTTGGAGGCACTTCAGGAAAAAAGTATAAGAAAAAAAGCTGGGGTAAAATACCCTACAAAGTCAGAAACCTAGTAAAACAAACTTCACGTGGAAAAATTATTTTTTTTGCAAGGAATTTTAGAAAACAAGAAAATGGGACTGTTTAGTATGCCAATTTTGAGTCCGCCATTTTCTTCCTTTAAATCGAGTAAGGATCACGTACCCCCATTTTTGACATTTTATGAAACTTTTCTCAAAATAATTCTAACTAGGTCAGTTCCGGTCCGTTTTGGCTGATTCTTTCTTCTATCGATAGAAAATCTCTGTGGCTATCCGGTTGCCAAAAATCGTCAAAAGTTGAACCGGCTGAACCAAGTTATGATTGAAAACGGACGAGTGGATACGGTTTTTTTTCCACGTTTTCCGTTTTTTCTGCCGAACTAGGGCCTAAATGAAAAATCCGGCTTTCCCATTCGATCCGTAATTTTGATAGCTATGTTGACAAAAAATATTAATAGGTTTTGAGTGAAATGTTCGAAATTCCGAGGGACCAGCTTCCACCTCTTGGGACGCGAGAACCGCTGGATAGATTGCTTTAATTTTTTGTCTCACCCTAAAAGAAGATCCTTAATTTTATTTTATGGTTTCAGATTTTTTTTCAGGTACGCTGGTTCTTGAGAAGTAGGTGGAA</canonical>
            <polymorphic>CATTTCACTGCGTTTTACCGCCATTTCCTTCTCGGTCTGAACTTCCACTTGTGATCCATTCTGTTTTTGGGACGTCGACACCGAATCGTCACGACAACGACGACTACTTCTTTCTCTAGAATTTATTCATAATTCAGAAGTTGTCTAACTAATTTTAACTTGCGAATTAGAATACCTGGTAGACGAAACTCTCTGAGCGCATGAGACAAAAATGAGGGTGGGAAGAAGGAAGAAGAGAATAAATGCAAGATGTTCAATAATTGCGAAATCCCAGAAAATGAGCATTTGTATTTTTCAACCTTGGGCAGGGAAATGAAGAAATGAAGGGTTTTGGAGGCACTTCAGGAAAAAAGTATAAGAAAAAAAGCTGGGGTAAAATACCCTACAAAGTCAGAAACCTAGTAAAACAAACTTCACGTGGAAAAATTATTTTTTTTGCAAGGAATTTTAGAAAACAAGAAAATGGGACTGTTTAGTATGCCAATTTTGAGTCCGCCATWTTCTTCCTTTAAATCGAGTAAGGATCACGTACCCCCATTTTTGACATTTTATGAAACTTTTCTCAAAATAATTCTAACTAGGTCAGTTCCGGTCCGTTTTGGCTGATTCTTTCTTCTATCGATAGAAAATCTCTGTGGCTATCCGGTTGCCAAAAATCGTCAAAAGTTGAACCGGCTGAACCAAGTTATGATTGAAAACGGACGAGTGGATACGGTTTTTTTTCCACGTTTTCCGTTTTTTCTGCCGAACTAGGGCCTAAATGAAAAATCCGGCTTTCCCATTCGATCCGTAATTTTGATAGCTATGTTGACAAAAAATATTAATAGGTTTTGAGTGAAATGTTCGAAATTCCGAGGGACCAGCTTCCACCTCTTGGGACGCGAGAACCGCTGGATAGATTGCTTTAATTTTTTGTCTCACCCTAAAAGAAGATCCTTAATTTTATTTTATGGTTTCAGATTTTTTTTCAGGTACGCTGGTTCTTGAGAAGTAGGTGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGAAAACAAGAAAATGGGACT</pcr_primer_p1>
		<pcr_primer_p2>CAAGGTTCAGTCTGTTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>892</pcr_amplicon_size>
		<canonical_amplicon>TTAGAAAACAAGAAAATGGGACTGTTTAGTATGCCAATTTTGAGTCCGCCATTTTCTTCCTTTAAATCGAGT</canonical_amplicon>
		<polymorphic_amplicon>TTAGAAAACAAGAAAATGGGACTGTTTAGTATGCCAATTTTGAGTCCGCCATWTTCTTCCTTTAAATCGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36288</snp_id>
        <super_contig>c010901040.Contig1</super_contig>
        <contig_pos>15612</contig_pos>
        <strand>+</strand>
        <context>TCGATAACTA[C/G]CAATTGAACT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTGATCCTCGAATTGAATTTCATTGAATCGATCGGCTTCATCGATAACTA</left_flank>
        <right_flank>CAATTGAACTCCTTTCATGGCTCTAGCGATCATGGTCTTTTCGTGTTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGGTGTGGATTCGAGCATTTTCCGTGGACAGCAAATAGTGGGCGTTTGGTGAGACATCTTTCGAAGATCTGAAAAGAAACAAATTGAGAACTAATGTTAAAATGTTTCTAACTACCTTATGGAAGTACCTGACCGAGTTACACGATGGGAAGAAGATGAGAACCTTTTTATCAGTTCTCTGTCGAATGAATTCCAGACAAACGCTGGTTTTCTCATCAGCTGGACATTCAACAAAATAGTTTTTCAGTGTGGAAGGAGCTGCGGAATTTCTCTCTTGTGACACTTTCACTTGCTTCGCGTTTCTCAAACCGAAAACCATCAGGTCGTCTTCTTCTTTCACTTGAGTTGCAGAGAACAAACCAGTACGACGTTGCTTGGGAATGCAGGAGAGAATCTCTCGCATACTGAAAACATTAACATTTTCGAGAATTGTAGAAGGGATAACTTACTGATCCTCGAATTGAATTTCATTGAATCGATCGGCTTCATCGATAACTAGCAATTGAACTCCTTTCATGGCTCTAGCGATCATGGTCTTTTCGTGTTGAATAATTTGGAAAAGTCGTCCTGGAGTGGCAACGAGAATATTGATATCCTTATTCTTGAACATTTTGATATTCTTATCCACTTTCTGTCCTCCAGTCACTGTCTCCACATTCAGTTTCATCTTCTCAGCGAATGGCTTGATGACATTGACAATCTGACTGCAAAGTTCTCTCGATGGCGACAAAATGAGTGCTCCAATTTCATTGGGTTGAAGTCGTGCATTTTGAATCATTCTCATCATCGGTAAAACGAAAGCCAACGTTTTTCCGGATCCAGTTGGTGACTCAACAACGACATCTGACAGATTCAGAAGATGTGTTCCGGCGAGGACCTGGAAGATGCAAGAACCAATAAATTTCCATCTCCCGTCCTTGCTTCACTAGTGCGCAGCTGTGAGAAGCCGGCGGTGCTTCCTCGTTCTCTCCCCCCAATGCTCTGCGTCTCCACGAGCTC</canonical>
            <polymorphic>TCGGTGTGGATTCGAGCATTTTCCGTGGACAGCAAATAGTGGGCGTTTGGTGAGACATCTTTCGAAGATCTGAAAAGAAACAAATTGAGAACTAATGTTAAAATGTTTCTAACTACCTTATGGAAGTACCTGACCGAGTTACACGATGGGAAGAAGATGAGAACCTTTTTATCAGTTCTCTGTCGAATGAATTCCAGACAAACGCTGGTTTTCTCATCAGCTGGACATTCAACAAAATAGTTTTTCAGTGTGGAAGGAGCTGCGGAATTTCTCTCTTGTGACACTTTCACTTGCTTCGCGTTTCTCAAACCGAAAACCATCAGGTCGTCTTCTTCTTTCACTTGAGTTGCAGAGAACAAACCAGTACGACGTTGCTTGGGAATGCAGGAGAGAATCTCTCGCATACTGAAAACATTAACATTTTCGAGAATTGTAGAAGGGATAACTTACTGATCCTCGAATTGAATTTCATTGAATCGATCGGCTTCATCGATAACTASCAATTGAACTCCTTTCATGGCTCTAGCGATCATGGTCTTTTCGTGTTGAATAATTTGGAAAAGTCGTCCTGGAGTGGCAACGAGAATATTGATATCCTTATTCTTGAACATTTTGATATTCTTATCCACTTTCTGTCCTCCAGTCACTGTCTCCACATTCAGTTTCATCTTCTCAGCGAATGGCTTGATGACATTGACAATCTGACTGCAAAGTTCTCTCGATGGCGACAAAATGAGTGCTCCAATTTCATTGGGTTGAAGTCGTGCATTTTGAATCATTCTCATCATCGGTAAAACGAAAGCCAACGTTTTTCCGGATCCAGTTGGTGACTCAACAACGACATCTGACAGATTCAGAAGATGTGTTCCGGCGAGGACCTGGAAGATGCAAGAACCAATAAATTTCCATCTCCCGTCCTTGCTTCACTAGTGCGCAGCTGTGAGAAGCCGGCGGTGCTTCCTCGTTCTCTCCCCCCAATGCTCTGCGTCTCCACGAGCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>497 404 73 26</canonical_bands>
                <polymorphic_bands>523 404 73</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAATCTCTCGCATACTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGGACAGAAAGTGGATAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAATCTCTCGCATACTGAAAACATTAACATTTTCGAGAATTGTAGAAGGGATAACTTACTGATCCTCGAATTGAATTTCATTGAATCGATCGGCTTCATCGATAACTAGCAATTGAACTCCTTTCATGGCTCTAGCGATCATGGTCTTTTCGTGTTGAATAATTTGGAAAAGTCGTCCTGGAGTGGCAACGAGAATATTGATATCCTTATTCTTGAACATTTTGATATTCTTATCCACTTTCTGTCCTC</canonical_amplicon>
		<polymorphic_amplicon>AGAATCTCTCGCATACTGAAAACATTAACATTTTCGAGAATTGTAGAAGGGATAACTTACTGATCCTCGAATTGAATTTCATTGAATCGATCGGCTTCATCGATAACTASCAATTGAACTCCTTTCATGGCTCTAGCGATCATGGTCTTTTCGTGTTGAATAATTTGGAAAAGTCGTCCTGGAGTGGCAACGAGAATATTGATATCCTTATTCTTGAACATTTTGATATTCTTATCCACTTTCTGTCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36289</snp_id>
        <super_contig>c010901040.Contig1</super_contig>
        <contig_pos>17525</contig_pos>
        <strand>+</strand>
        <context>TTTCTTCCAA[G/T]AATTCTTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCAATTAAATAATTATTCCCAATACCTAAAAAAATATTTTTTTCTTCCAA</left_flank>
        <right_flank>AATTCTTCAATCCCACCTTCAGATTCGTCACCAAGTACAATCACACAAAA</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGAACAAAATTCAATTTTCTGTTTGTAAAAATTCCGAAAAAATTCCCTGCAAAAGTGTGCAAACACAAATACGCACTTTTGCGGACAAAGCATTAAATCCTACGACTTATGCCTGATGTGGAAGGTCGTTTTAGGTTGCTTTCTAGCTCGAAAATCAATTAAATCTTGGTAGAATCTTTGTGAAAATTGTCAAAAAATCAGTGTTCAATTTTAATCTTGCTTTTCGTTTCTTTTCAATATTGTCTTCGTTTTTTCCTGCTTTATAAATTTTCTTTCCTTCAAAAATAATTTTTCCAGACAAAATGACATATTTCACAAACTGGGAAGAGTTTGCAAAGGCTGCTGAGAGACTTCACAGTGCTAATCCAGAGAAGTGTAGGTTCGTAGAAAAATCCATCATCAAGAAAAAAACGACTAGGCTAAATGAGCAGATTTTGAGCTCATTTTTCAATTAAATAATTATTCCCAATACCTAAAAAAATATTTTTTTCTTCCAATAATTCTTCAATCCCACCTTCAGATTCGTCACCAAGTACAATCACACAAAAGGAGAACTGGTTCTGAAGCTCACCGACGACGTCGTCTGCCTCCAATACAGCACCAACCAGTTGCAAGATGTGAAGAAGCTGGAAAAGCTGTCGTCAACTCTTCTCCGCAGCATCGTTACTCAATAATTATATGCTTTTTTGTCTGTCATTCAGTATTCCATTCAAATGTTTATAAAATATTTATTGGTCGAGTAATATGTTGCTGTTTTTTTTTTGTTTTTTCAGCTCAATTCGTAATTAATATGCTCAAAATCTCCTGCTACGTGGTACGCGTGTTAGAAGAAGGATAAGGGAAATTTAAAGCAGTTTCAGTTTGATTTAGCAACAAGAAAACAATGTCTCGCCGAAACGATAGTTCGAGAAGACATCGCAAATCACGTGCTGTCAAAAATGATCACGAATATCCGTTGGTTTCGTTCGATGGAGGAGTTGAGTCCTACGAAATCCCAG</canonical>
            <polymorphic>AATGAACAAAATTCAATTTTCTGTTTGTAAAAATTCCGAAAAAATTCCCTGCAAAAGTGTGCAAACACAAATACGCACTTTTGCGGACAAAGCATTAAATCCTACGACTTATGCCTGATGTGGAAGGTCGTTTTAGGTTGCTTTCTAGCTCGAAAATCAATTAAATCTTGGTAGAATCTTTGTGAAAATTGTCAAAAAATCAGTGTTCAATTTTAATCTTGCTTTTCGTTTCTTTTCAATATTGTCTTCGTTTTTTCCTGCTTTATAAATTTTCTTTCCTTCAAAAATAATTTTTCCAGACAAAATGACATATTTCACAAACTGGGAAGAGTTTGCAAAGGCTGCTGAGAGACTTCACAGTGCTAATCCAGAGAAGTGTAGGTTCGTAGAAAAATCCATCATCAAGAAAAAAACGACTAGGCTAAATGAGCAGATTTTGAGCTCATTTTTCAATTAAATAATTATTCCCAATACCTAAAAAAATATTTTTTTCTTCCAAKAATTCTTCAATCCCACCTTCAGATTCGTCACCAAGTACAATCACACAAAAGGAGAACTGGTTCTGAAGCTCACCGACGACGTCGTCTGCCTCCAATACAGCACCAACCAGTTGCAAGATGTGAAGAAGCTGGAAAAGCTGTCGTCAACTCTTCTCCGCAGCATCGTTACTCAATAATTATATGCTTTTTTGTCTGTCATTCAGTATTCCATTCAAATGTTTATAAAATATTTATTGGTCGAGTAATATGTTGCTGTTTTTTTTTTGTTTTTTCAGCTCAATTCGTAATTAATATGCTCAAAATCTCCTGCTACGTGGTACGCGTGTTAGAAGAAGGATAAGGGAAATTTAAAGCAGTTTCAGTTTGATTTAGCAACAAGAAAACAATGTCTCGCCGAAACGATAGTTCGAGAAGACATCGCAAATCACGTGCTGTCAAAAATGATCACGAATATCCGTTGGTTTCGTTCGATGGAGGAGTTGAGTCCTACGAAATCCCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTTCACAAACTGGGAAGAGT</pcr_primer_p1>
		<pcr_primer_p2>AGTTCTCCTTTTGTGTGATTGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATATTTCACAAACTGGGAAGAGTTTGCAAAGGCTGCTGAGAGACTTCACAGTGCTAATCCAGAGAAGTGTAGGTTCGTAGAAAAATCCATCATCAAGAAAAAAACGACTAGGCTAAATGAGCAGATTTTGAGCTCATTTTTCAATTAAATAATTATTCCCAATACCTAAAAAAATATTTTTTTCTTCCAATAATTCTTCAATCCCACCTTCAGATTCGTCACCAAGTACAATCACACAAAAGGAGAACT</canonical_amplicon>
		<polymorphic_amplicon>ATATTTCACAAACTGGGAAGAGTTTGCAAAGGCTGCTGAGAGACTTCACAGTGCTAATCCAGAGAAGTGTAGGTTCGTAGAAAAATCCATCATCAAGAAAAAAACGACTAGGCTAAATGAGCAGATTTTGAGCTCATTTTTCAATTAAATAATTATTCCCAATACCTAAAAAAATATTTTTTTCTTCCAAKAATTCTTCAATCCCACCTTCAGATTCGTCACCAAGTACAATCACACAAAAGGAGAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36290</snp_id>
        <super_contig>c010901044.Contig1</super_contig>
        <contig_pos>19502</contig_pos>
        <strand>+</strand>
        <context>TGAACATGTG[A/C]TTTCCTTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATTTCAAAGATGTCTGATATTGGCCCAATGTTTAAAACATGAACATGTG</left_flank>
        <right_flank>TTTCCTTTTAAAATTTTTTAACGAACAACCAGTTTTTTTCAAAAATTGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTTTATTCCAGATGCTCTCCTCCAGATGGAAGAGTTGACATTTCTCATAACATCGAATTGGTGCACATTATTGGAATTAACGAGTTGAATCAAAATATGCAAGTTCTTGTGTACATTATTCAGGTAAATTTTGTGATGAGGTGACCGAGAAAATACGGTTTTACTAGCAATGGAAAGATAGCTCTTTGACAAGATTGGGAACTATTCTAAGCTAGTATTCCAGCAGTGTGTAACCCCTATGCCTTACTCTGAAAAGAAAGTTGGAACCAGAATTTGTTTCTTTTTTTCACGGTCGACTGAGAAAAATTTGAAAAAAAGTTTTCGAAAAAGTTTTTCTAAATTTTCTAGAAATCTTAGGATGCTCCATTATTTTTCATTATCGCACTTCAAAACCGCTCAAAAATGTTAGAGAGTTTAGAAGCATCGTAACTATGAAATTGGTAGTGTATTTCAAAGATGTCTGATATTGGCCCAATGTTTAAAACATGAACATGTGTTTTCCTTTTAAAATTTTTTAACGAACAACCAGTTTTTTTCAAAAATTGACATCTCCTGATTGGGAAATTAGGGTATCATGATACCTTCAATTTTGCTCAAAATCTTGCAGTGTTCCGCAAAAAATACAAATTTTGAATTTGAGACTGCTAGAAAAAATGAAAATAGTTGTTTCTGTTGTTTTGCTCTTTGAAAATATTTTAATTAATCACAAAGCTCTCAGACTTGAACACAAAATGCTCCTCGACGCAGTTCGATCCCCGATCAAAGTTTCATACATCGGAGAAGTCACCTACGCCTATCCAGCAATTTACACTGTCCTCTGTCAGATTGGTATGTGGGTTTTTTCTGGTTTCCCTAATGGATTTTTGATTAATGATGAGTGCTTTCTGGCATCTTTTTCTCATTTTCTTTTTGTGGGAACCTCCTATCAATTATCTTGGAACAACTTTCGAGATTTTGTGGAGTGCAAAATGAGAAGAAGAGAGAGATGAGAGCGTTT</canonical>
            <polymorphic>AAAGTTTATTCCAGATGCTCTCCTCCAGATGGAAGAGTTGACATTTCTCATAACATCGAATTGGTGCACATTATTGGAATTAACGAGTTGAATCAAAATATGCAAGTTCTTGTGTACATTATTCAGGTAAATTTTGTGATGAGGTGACCGAGAAAATACGGTTTTACTAGCAATGGAAAGATAGCTCTTTGACAAGATTGGGAACTATTCTAAGCTAGTATTCCAGCAGTGTGTAACCCCTATGCCTTACTCTGAAAAGAAAGTTGGAACCAGAATTTGTTTCTTTTTTTCACGGTCGACTGAGAAAAATTTGAAAAAAAGTTTTCGAAAAAGTTTTTCTAAATTTTCTAGAAATCTTAGGATGCTCCATTATTTTTCATTATCGCACTTCAAAACCGCTCAAAAATGTTAGAGAGTTTAGAAGCATCGTAACTATGAAATTGGTAGTGTATTTCAAAGATGTCTGATATTGGCCCAATGTTTAAAACATGAACATGTGMTTTCCTTTTAAAATTTTTTAACGAACAACCAGTTTTTTTCAAAAATTGACATCTCCTGATTGGGAAATTAGGGTATCATGATACCTTCAATTTTGCTCAAAATCTTGCAGTGTTCCGCAAAAAATACAAATTTTGAATTTGAGACTGCTAGAAAAAATGAAAATAGTTGTTTCTGTTGTTTTGCTCTTTGAAAATATTTTAATTAATCACAAAGCTCTCAGACTTGAACACAAAATGCTCCTCGACGCAGTTCGATCCCCGATCAAAGTTTCATACATCGGAGAAGTCACCTACGCCTATCCAGCAATTTACACTGTCCTCTGTCAGATTGGTATGTGGGTTTTTTCTGGTTTCCCTAATGGATTTTTGATTAATGATGAGTGCTTTCTGGCATCTTTTTCTCATTTTCTTTTTGTGGGAACCTCCTATCAATTATCTTGGAACAACTTTCGAGATTTTGTGGAGTGCAAAATGAGAAGAAGAGAGAGATGAGAGCGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCTTAGGATGCTCCATTATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAGCAAAATTGAAGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCTTAGGATGCTCCATTATTTTTCATTATCGCACTTCAAAACCGCTCAAAAATGTTAGAGAGTTTAGAAGCATCGTAACTATGAAATTGGTAGTGTATTTCAAAGATGTCTGATATTGGCCCAATGTTTAAAACATGAACATGTGTTTTCCTTTTAAAATTTTTTAACGAACAACCAGTTTTTTTCAAAAATTGACATCTCCTGATTGGGAAATTAGGGTATCATGATACCTTCAATTTTGCTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>AATCTTAGGATGCTCCATTATTTTTCATTATCGCACTTCAAAACCGCTCAAAAATGTTAGAGAGTTTAGAAGCATCGTAACTATGAAATTGGTAGTGTATTTCAAAGATGTCTGATATTGGCCCAATGTTTAAAACATGAACATGTGMTTTCCTTTTAAAATTTTTTAACGAACAACCAGTTTTTTTCAAAAATTGACATCTCCTGATTGGGAAATTAGGGTATCATGATACCTTCAATTTTGCTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36291</snp_id>
        <super_contig>c010901085.Contig1</super_contig>
        <contig_pos>29295</contig_pos>
        <strand>+</strand>
        <context>TAGTGGACTA[A/C]ACATGAATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTGGAAGAGCACGATCATGCACATGGAAATGATCCGGTTAGTGGACTA</left_flank>
        <right_flank>ACATGAATAAGACTGATTTTTATTCTTACTGTTTACCTTTTTCGAGAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCAATTAATTCGTTTAATTGTAATTTGAAAAAAAAGTATTACTCCTGAAAAAAAATACAGTAATCTGTGTAACCCAGACTACACCACTTCTTTCCAAAACTTCCATCAAAAATGGTATATTCCACGTACATGACCTTAATTTCTATGACCCTTCGCTAGCTGGCACATCTGTCACCCTGTCCCTTTAACTTTTTTCTGACCTTATTTATCTTTATGCCAAAAATCCCGTTTCAATCTTCAGATGTGCTGATAGAATGGCAAATTGGCCTCGAGTTTCTCCCATCGCCTACGTGGCACTCGGCGTACTTCTCGGCTTGACACTGTCGATTGTCTCTCAATCGGGAAATGTGAGCTACTTTTTTTTGAATCAAAGAATCGAAAAGATTTCAGTCAGCCTATGATGCAGCATCTCGGATAGCAATCATCAGAGCGAATCGCAATGATCCACAATTGGAAGAGCACGATCATGCACATGGAAATGATCCGGTTAGTGGACTAAACATGAATAAGACTGATTTTTATTCTTACTGTTTACCTTTTTCGAGAAAGTATCGGGCATATATATATATTTTTTTTTCAAGCCATGGCTCCTGTCTAAAAATAGACAGAAAATACCTTTTCCTCTAATAGGAGCCCGCCCGAACTGTCATTTTGAGCTCAATTATCTTGATTCCCATAAGAGATATCAAAAATCTGTCAACTAATAAATTGTGGGTGATATTACGATAATCAATCTATCAGTTGACAATTTTCTGATATCTTTCTCAGGAATGGAGGTAATTGAGGGCAAAGTGGAGGGTTGGAATTAGAATACAATGCTGAGCAATGAAGAAGTCTTTCAGCACGGCGACGAAGAAGTGGACGATCATCATGCCAACTTCGCACCCGTTCAATTCCATTCGAACGACTCATCACATAGTCACGATGGAGAGAGTGTAATCGCAGATGAGGTGGCAAAGAAGGTTCGGGTATTCTGTTGGATTCTCACTGGAAAACAGA</canonical>
            <polymorphic>CCCAATTAATTCGTTTAATTGTAATTTGAAAAAAAAGTATTACTCCTGAAAAAAAATACAGTAATCTGTGTAACCCAGACTACACCACTTCTTTCCAAAACTTCCATCAAAAATGGTATATTCCACGTACATGACCTTAATTTCTATGACCCTTCGCTAGCTGGCACATCTGTCACCCTGTCCCTTTAACTTTTTTCTGACCTTATTTATCTTTATGCCAAAAATCCCGTTTCAATCTTCAGATGTGCTGATAGAATGGCAAATTGGCCTCGAGTTTCTCCCATCGCCTACGTGGCACTCGGCGTACTTCTCGGCTTGACACTGTCGATTGTCTCTCAATCGGGAAATGTGAGCTACTTTTTTTTGAATCAAAGAATCGAAAAGATTTCAGTCAGCCTATGATGCAGCATCTCGGATAGCAATCATCAGAGCGAATCGCAATGATCCACAATTGGAAGAGCACGATCATGCACATGGAAATGATCCGGTTAGTGGACTAMACATGAATAAGACTGATTTTTATTCTTACTGTTTACCTTTTTCGAGAAAGTATCGGGCATATATATATATTTTTTTTTCAAGCCATGGCTCCTGTCTAAAAATAGACAGAAAATACCTTTTCCTCTAATAGGAGCCCGCCCGAACTGTCATTTTGAGCTCAATTATCTTGATTCCCATAAGAGATATCAAAAATCTGTCAACTAATAAATTGTGGGTGATATTACGATAATCAATCTATCAGTTGACAATTTTCTGATATCTTTCTCAGGAATGGAGGTAATTGAGGGCAAAGTGGAGGGTTGGAATTAGAATACAATGCTGAGCAATGAAGAAGTCTTTCAGCACGGCGACGAAGAAGTGGACGATCATCATGCCAACTTCGCACCCGTTCAATTCCATTCGAACGACTCATCACATAGTCACGATGGAGAGAGTGTAATCGCAGATGAGGTGGCAAAGAAGGTTCGGGTATTCTGTTGGATTCTCACTGGAAAACAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATCCACAATTGGAAGAG</pcr_primer_p1>
		<pcr_primer_p2>ATTGCTCAGCATTGTATTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>388</pcr_amplicon_size>
		<canonical_amplicon>ATGATCCACAATTGGAAGAGCACGATCATGCACATGGAAATGATCCGGTTAGTGGACTAAACATGAATAAGACTGATTTTTATTCTTACTGTTTACCTTTTTCGAGAAAGTATCGGGCATATATATATATTTTTTTTTCAAGCCATGGCTCCTGTCTAAAAATAGACAGAAAATACCTTTTCCTCTAATAGGAGCCCGCCCGAACTGTCATTTTGAGCTCAATTATCTTGATTCCCATAAGAGATATCAAAAATCTGTCAACTAATAAATTGTGGGTGATATTACGATAATCAATCTATCAGTTGACAATTTTCTGATATCTTTCTCAGGAATGGAGGTAATTGAGGGCAAAGTGGAGGGTTGGAATTAGAATACAATGCTGAGCAAT</canonical_amplicon>
		<polymorphic_amplicon>ATGATCCACAATTGGAAGAGCACGATCATGCACATGGAAATGATCCGGTTAGTGGACTAMACATGAATAAGACTGATTTTTATTCTTACTGTTTACCTTTTTCGAGAAAGTATCGGGCATATATATATATTTTTTTTTCAAGCCATGGCTCCTGTCTAAAAATAGACAGAAAATACCTTTTCCTCTAATAGGAGCCCGCCCGAACTGTCATTTTGAGCTCAATTATCTTGATTCCCATAAGAGATATCAAAAATCTGTCAACTAATAAATTGTGGGTGATATTACGATAATCAATCTATCAGTTGACAATTTTCTGATATCTTTCTCAGGAATGGAGGTAATTGAGGGCAAAGTGGAGGGTTGGAATTAGAATACAATGCTGAGCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36292</snp_id>
        <super_contig>c010901085.Contig1</super_contig>
        <contig_pos>74120</contig_pos>
        <strand>+</strand>
        <context>TTTCTCCGAT[C/T]AAAGCTTCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAGCGGATTGAATCAGAATCCATCGTAGATTCATGTCGTTTTCTCCGAT</left_flank>
        <right_flank>AAAGCTTCAGCGTATTTCAAGGCAGCTAAACGGCAGTTTGGAGACTCGGA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGAACATCTGTAGATTCCACAGTCGCATGCAAAGCCAACTCTGTTGCTTTCTCAATCATCTCGATGTTTCCAACTTCGTGTAGCAATTGAACAATTCGTGGAGCCACTGTCATCCAATGATCATCACCTTCAACGATCCGAAGGTGTGCTGCCTCTTTCATCACAATCGTTTCGAATACCGCGTAGAGATATTTCGATGCCTGAAATTAATTCAGCAAATATTTTTTCGTAACGGGCGGATTATTCGGCGCCGAACTCACAATTTGATGAACCAAACTGTTGTAGGTGTTCACCGTTGTGTTCGTTGTCTCATTTGCAGCGCGACGATAATCCTTATGAAGGCTACTCCACAGTGCTCCAATGATCACAGAAGGAGGAGGAGTTGGTTTCTGGAGCGACTTTTCGAGTTGTCTGAGCGCTTCTGATCGGATAGAATCTCTTTGGTCACCAGCGGATTGAATCAGAATCCATCGTAGATTCATGTCGTTTTCTCCGATCAAAGCTTCAGCGTATTTCAAGGCAGCTAAACGGCAGTTTGGAGACTCGGAATTGATATATTCACTGATGAATTCCCTGAGTCTTGTACGGAGTTCCGCTTTTTCAGATTCCAAAAACAGAGGAAGCCACGTTGTGAGGCAAGAAACGATTGCACTCGAGACATCTTCAACACTTTCCTGAAAAAAAATGTTATTCAGATCAGTTTGATATGTCGTCTTACCGTAGAGAGGACTTCGAACATCTTCGTGATAACTGCAGCATCGTCCAGAACTAAACTGGGTGTTCGTTTACCGATCACTGCCACACAACGATAGGTTCCACATAATGCGAGAGTGGTCTGAAAAATTCATAATTTTATCAGTCAACTGTTATTACAACTTACGATTGCATCCGAGGAAGAAAGCTTGCGGAGCGTTTTGAACATTTTGTCTGCAAACGGCTTCAGATATCTATCCGGCATCTTCTCGGCACAGTGATTGAAGAAGTTCATTGCAGCTGCT</canonical>
            <polymorphic>GATGAACATCTGTAGATTCCACAGTCGCATGCAAAGCCAACTCTGTTGCTTTCTCAATCATCTCGATGTTTCCAACTTCGTGTAGCAATTGAACAATTCGTGGAGCCACTGTCATCCAATGATCATCACCTTCAACGATCCGAAGGTGTGCTGCCTCTTTCATCACAATCGTTTCGAATACCGCGTAGAGATATTTCGATGCCTGAAATTAATTCAGCAAATATTTTTTCGTAACGGGCGGATTATTCGGCGCCGAACTCACAATTTGATGAACCAAACTGTTGTAGGTGTTCACCGTTGTGTTCGTTGTCTCATTTGCAGCGCGACGATAATCCTTATGAAGGCTACTCCACAGTGCTCCAATGATCACAGAAGGAGGAGGAGTTGGTTTCTGGAGCGACTTTTCGAGTTGTCTGAGCGCTTCTGATCGGATAGAATCTCTTTGGTCACCAGCGGATTGAATCAGAATCCATCGTAGATTCATGTCGTTTTCTCCGATYAAAGCTTCAGCGTATTTCAAGGCAGCTAAACGGCAGTTTGGAGACTCGGAATTGATATATTCACTGATGAATTCCCTGAGTCTTGTACGGAGTTCCGCTTTTTCAGATTCCAAAAACAGAGGAAGCCACGTTGTGAGGCAAGAAACGATTGCACTCGAGACATCTTCAACACTTTCCTGAAAAAAAATGTTATTCAGATCAGTTTGATATGTCGTCTTACCGTAGAGAGGACTTCGAACATCTTCGTGATAACTGCAGCATCGTCCAGAACTAAACTGGGTGTTCGTTTACCGATCACTGCCACACAACGATAGGTTCCACATAATGCGAGAGTGGTCTGAAAAATTCATAATTTTATCAGTCAACTGTTATTACAACTTACGATTGCATCCGAGGAAGAAAGCTTGCGGAGCGTTTTGAACATTTTGTCTGCAAACGGCTTCAGATATCTATCCGGCATCTTCTCGGCACAGTGATTGAAGAAGTTCATTGCAGCTGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>228 208 200 120 96 71 61 16</canonical_bands>
                <polymorphic_bands>271 228 208 120 96 61 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGATAATCCTTATGAAGGCTAC</pcr_primer_p1>
		<pcr_primer_p2>GAATATATCAATTCCGAGTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>ACGATAATCCTTATGAAGGCTACTCCACAGTGCTCCAATGATCACAGAAGGAGGAGGAGTTGGTTTCTGGAGCGACTTTTCGAGTTGTCTGAGCGCTTCTGATCGGATAGAATCTCTTTGGTCACCAGCGGATTGAATCAGAATCCATCGTAGATTCATGTCGTTTTCTCCGATCAAAGCTTCAGCGTATTTCAAGGCAGCTAAACGGCAGTTTGGAGACTCGGAATTGATATATTC</canonical_amplicon>
		<polymorphic_amplicon>ACGATAATCCTTATGAAGGCTACTCCACAGTGCTCCAATGATCACAGAAGGAGGAGGAGTTGGTTTCTGGAGCGACTTTTCGAGTTGTCTGAGCGCTTCTGATCGGATAGAATCTCTTTGGTCACCAGCGGATTGAATCAGAATCCATCGTAGATTCATGTCGTTTTCTCCGATYAAAGCTTCAGCGTATTTCAAGGCAGCTAAACGGCAGTTTGGAGACTCGGAATTGATATATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36293</snp_id>
        <super_contig>c010901085.Contig1</super_contig>
        <contig_pos>74183</contig_pos>
        <strand>+</strand>
        <context>TGATATATTC[A/G]CTGATGAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTTCAAGGCAGCTAAACGGCAGTTTGGAGACTCGGAATTGATATATTC</left_flank>
        <right_flank>CTGATGAATTCCCTGAGTCTTGTACGGAGTTCCGCTTTTTCAGATTCCAA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATGTTTCCAACTTCGTGTAGCAATTGAACAATTCGTGGAGCCACTGTCATCCAATGATCATCACCTTCAACGATCCGAAGGTGTGCTGCCTCTTTCATCACAATCGTTTCGAATACCGCGTAGAGATATTTCGATGCCTGAAATTAATTCAGCAAATATTTTTTCGTAACGGGCGGATTATTCGGCGCCGAACTCACAATTTGATGAACCAAACTGTTGTAGGTGTTCACCGTTGTGTTCGTTGTCTCATTTGCAGCGCGACGATAATCCTTATGAAGGCTACTCCACAGTGCTCCAATGATCACAGAAGGAGGAGGAGTTGGTTTCTGGAGCGACTTTTCGAGTTGTCTGAGCGCTTCTGATCGGATAGAATCTCTTTGGTCACCAGCGGATTGAATCAGAATCCATCGTAGATTCATGTCGTTTTCTCCGATCAAAGCTTCAGCGTATTTCAAGGCAGCTAAACGGCAGTTTGGAGACTCGGAATTGATATATTCACTGATGAATTCCCTGAGTCTTGTACGGAGTTCCGCTTTTTCAGATTCCAAAAACAGAGGAAGCCACGTTGTGAGGCAAGAAACGATTGCACTCGAGACATCTTCAACACTTTCCTGAAAAAAAATGTTATTCAGATCAGTTTGATATGTCGTCTTACCGTAGAGAGGACTTCGAACATCTTCGTGATAACTGCAGCATCGTCCAGAACTAAACTGGGTGTTCGTTTACCGATCACTGCCACACAACGATAGGTTCCACATAATGCGAGAGTGGTCTGAAAAATTCATAATTTTATCAGTCAACTGTTATTACAACTTACGATTGCATCCGAGGAAGAAAGCTTGCGGAGCGTTTTGAACATTTTGTCTGCAAACGGCTTCAGATATCTATCCGGCATCTTCTCGGCACAGTGATTGAAGAAGTTCATTGCAGCTGCTTGAACTCGAGCGTGTATACTCTCACAACCAAATAGGCAAATCTTGACGTTGCTGGTGATCGCA</canonical>
            <polymorphic>CGATGTTTCCAACTTCGTGTAGCAATTGAACAATTCGTGGAGCCACTGTCATCCAATGATCATCACCTTCAACGATCCGAAGGTGTGCTGCCTCTTTCATCACAATCGTTTCGAATACCGCGTAGAGATATTTCGATGCCTGAAATTAATTCAGCAAATATTTTTTCGTAACGGGCGGATTATTCGGCGCCGAACTCACAATTTGATGAACCAAACTGTTGTAGGTGTTCACCGTTGTGTTCGTTGTCTCATTTGCAGCGCGACGATAATCCTTATGAAGGCTACTCCACAGTGCTCCAATGATCACAGAAGGAGGAGGAGTTGGTTTCTGGAGCGACTTTTCGAGTTGTCTGAGCGCTTCTGATCGGATAGAATCTCTTTGGTCACCAGCGGATTGAATCAGAATCCATCGTAGATTCATGTCGTTTTCTCCGATCAAAGCTTCAGCGTATTTCAAGGCAGCTAAACGGCAGTTTGGAGACTCGGAATTGATATATTCRCTGATGAATTCCCTGAGTCTTGTACGGAGTTCCGCTTTTTCAGATTCCAAAAACAGAGGAAGCCACGTTGTGAGGCAAGAAACGATTGCACTCGAGACATCTTCAACACTTTCCTGAAAAAAAATGTTATTCAGATCAGTTTGATATGTCGTCTTACCGTAGAGAGGACTTCGAACATCTTCGTGATAACTGCAGCATCGTCCAGAACTAAACTGGGTGTTCGTTTACCGATCACTGCCACACAACGATAGGTTCCACATAATGCGAGAGTGGTCTGAAAAATTCATAATTTTATCAGTCAACTGTTATTACAACTTACGATTGCATCCGAGGAAGAAAGCTTGCGGAGCGTTTTGAACATTTTGTCTGCAAACGGCTTCAGATATCTATCCGGCATCTTCTCGGCACAGTGATTGAAGAAGTTCATTGCAGCTGCTTGAACTCGAGCGTGTATACTCTCACAACCAAATAGGCAAATCTTGACGTTGCTGGTGATCGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>135 114 96 80 77 65 50 39 34 33 29 20 20 20 19 18 18 15 15 15 15 12 10 8 7 6 6 6 5 5 4 2 2</canonical_bands>
                <polymorphic_bands>179 135 96 80 77 50 39 34 33 29 20 20 20 19 18 18 15 15 15 15 12 10 8 7 6 6 6 5 5 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAATCCATCGTAGATTCATGT</pcr_primer_p1>
		<pcr_primer_p2>CGACATATCAAACTGATCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAATCCATCGTAGATTCATGTCGTTTTCTCCGATCAAAGCTTCAGCGTATTTCAAGGCAGCTAAACGGCAGTTTGGAGACTCGGAATTGATATATTCACTGATGAATTCCCTGAGTCTTGTACGGAGTTCCGCTTTTTCAGATTCCAAAAACAGAGGAAGCCACGTTGTGAGGCAAGAAACGATTGCACTCGAGACATCTTCAACACTTTCCTGAAAAAAAATGTTATTCAGATCAGTTTGATATGTCG</canonical_amplicon>
		<polymorphic_amplicon>AGAATCCATCGTAGATTCATGTCGTTTTCTCCGATCAAAGCTTCAGCGTATTTCAAGGCAGCTAAACGGCAGTTTGGAGACTCGGAATTGATATATTCRCTGATGAATTCCCTGAGTCTTGTACGGAGTTCCGCTTTTTCAGATTCCAAAAACAGAGGAAGCCACGTTGTGAGGCAAGAAACGATTGCACTCGAGACATCTTCAACACTTTCCTGAAAAAAAATGTTATTCAGATCAGTTTGATATGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36294</snp_id>
        <super_contig>c010901107.Contig1</super_contig>
        <contig_pos>4422</contig_pos>
        <strand></strand>
        <context>aaacgatttt[T/C]agtacatttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTCCTATCTAAAAAACAGGAAAACTATTTACAAATAGGAAAACGATTTT</left_flank>
        <right_flank>AGTACATTTTCACGCTTCCATTTACCTTTTGGTAAATGATTCAGTTGATT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACAAAATTGATAGTTCCTTCTTTTACGTTATGCGAAAAAAAGAGTGAACTTAATTAAACCAATCTGAAATGATGAAAACCTGAATATCATATGGCCGTATTTATAAAATTAACTTTTGTGAATCATTTACTCTCGAAAAAACAACTGAAAAACGTGAAAATTAAAGGAAAATCATTTCCTTTTTGGTAAATAGGGGTACCAATTTTGTTTGCTGTTTACAACCACTTTTTGGAAACTTTTCATTCCAAAAAAGTTATGTATGAAAAGAATAGTATTGTAACATCAATATTATCTAACTTTGAACTGATATTTCGTTTCGGTTCAACTCAAATATTATGATTTTTGTTACAAATGACATGAATGAATAGATCATTGAATTTAAAGTAATTTGTCAAAAAATGAGCATCTTTCAGTTTATAGTAATGGAGAAAATCTATTTCGAAGTCGTTTTCCTATCTAAAAAACAGGAAAACTATTTACAAATAGGAAAACGATTTTTAGTACATTTTCACGCTTCCATTTACCTTTTGGTAAATGATTCAGTTGATTTTCTGAGGATAAATGATTTACAAAAGTGAATTTCATGAATACGGCCTCTGTTGTAGGGAAATCATGTTCATTTTAAAGTTCTCAATCTCATGAAAATAATTTATTGATAACCGTGAAAAACGAGAGTAGGTAATTTTCAAACAGAAATATTTGTTATGAATAAAATAACCAGGAATAAGGAAAATACAAATTTGGAAACACTTGAAAATTAAAAACATAAAAGATCATGGAACATTTTACCAGTTCGAATTAATTTGCAGTGTTGTATGTGAAGAATTCCGATGATTCAAAATTGACCTAACAAGGGAACCATGTTTAGCCTTCATCTCAGAATTTTTTCTAAATTTGCTCATTTATAGTTTCAAACACGGGCTTTTTTGTGGTCTATTTAGTTCTCTGTCCAAATTTCTAGAAGTCGAGTTATGGGCTGTTTAAGTGATTTCAGTACTA</canonical>
            <polymorphic>GACAAAATTGATAGTTCCTTCTTTTACGTTATGCGAAAAAAAGAGTGAACTTAATTAAACCAATCTGAAATGATGAAAACCTGAATATCATATGGCCGTATTTATAAAATTAACTTTTGTGAATCATTTACTCTCGAAAAAACAACTGAAAAACGTGAAAATTAAAGGAAAATCATTTCCTTTTTGGTAAATAGGGGTACCAATTTTGTTTGCTGTTTACAACCACTTTTTGGAAACTTTTCATTCCAAAAAAGTTATGTATGAAAAGAATAGTATTGTAACATCAATATTATCTAACTTTGAACTGATATTTCGTTTCGGTTCAACTCAAATATTATGATTTTTGTTACAAATGACATGAATGAATAGATCATTGAATTTAAAGTAATTTGTCAAAAAATGAGCATCTTTCAGTTTATAGTAATGGAGAAAATCTATTTCGAAGTCGTTTTCCTATCTAAAAAACAGGAAAACTATTTACAAATAGGAAAACGATTTTYAGTACATTTTCACGCTTCCATTTACCTTTTGGTAAATGATTCAGTTGATTTTCTGAGGATAAATGATTTACAAAAGTGAATTTCATGAATACGGCCTCTGTTGTAGGGAAATCATGTTCATTTTAAAGTTCTCAATCTCATGAAAATAATTTATTGATAACCGTGAAAAACGAGAGTAGGTAATTTTCAAACAGAAATATTTGTTATGAATAAAATAACCAGGAATAAGGAAAATACAAATTTGGAAACACTTGAAAATTAAAAACATAAAAGATCATGGAACATTTTACCAGTTCGAATTAATTTGCAGTGTTGTATGTGAAGAATTCCGATGATTCAAAATTGACCTAACAAGGGAACCATGTTTAGCCTTCATCTCAGAATTTTTTCTAAATTTGCTCATTTATAGTTTCAAACACGGGCTTTTTTGTGGTCTATTTAGTTCTCTGTCCAAATTTCTAGAAGTCGAGTTATGGGCTGTTTAAGTGATTTCAGTACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATGATGAAAACCTGAATATC</pcr_primer_p1>
		<pcr_primer_p2>ATGAACATGATTTCCCTACAAC</pcr_primer_p2>
		<pcr_amplicon_size>555</pcr_amplicon_size>
		<canonical_amplicon>GAAATGATGAAAACCTGAATATCATATGGCCGTATTTATAAAATTAACTTTTGTGAATCATTTACTCTCGAAAAAACAACTGAAAAACGTGAAAATTAAAGGAAAATCATTTCCTTTTTGGTAAATAGGGGTACCAATTTTGTTTGCTGTTTACAACCACTTTTTGGAAACTTTTCATTCCAAAAAAGTTATGTATGAAAAGAATAGTATTGTAACATCAATATTATCTAACTTTGAACTGATATTTCGTTTCGGTTCAACTCAAATATTATGATTTTTGTTACAAATGACATGAATGAATAGATCATTGAATTTAAAGTAATTTGTCAAAAAATGAGCATCTTTCAGTTTATAGTAATGGAGAAAATCTATTTCGAAGTCGTTTTCCTATCTAAAAAACAGGAAAACTATTTACAAATAGGAAAACGATTTTTAGTACATTTTCACGCTTCCATTTACCTTTTGGTAAATGATTCAGTTGATTTTCTGAGGATAAATGATTTACAAAAGTGAATTTCATGAATACGGCCTCTGTTGTAGGGAAATCATGTTCAT</canonical_amplicon>
		<polymorphic_amplicon>GAAATGATGAAAACCTGAATATCATATGGCCGTATTTATAAAATTAACTTTTGTGAATCATTTACTCTCGAAAAAACAACTGAAAAACGTGAAAATTAAAGGAAAATCATTTCCTTTTTGGTAAATAGGGGTACCAATTTTGTTTGCTGTTTACAACCACTTTTTGGAAACTTTTCATTCCAAAAAAGTTATGTATGAAAAGAATAGTATTGTAACATCAATATTATCTAACTTTGAACTGATATTTCGTTTCGGTTCAACTCAAATATTATGATTTTTGTTACAAATGACATGAATGAATAGATCATTGAATTTAAAGTAATTTGTCAAAAAATGAGCATCTTTCAGTTTATAGTAATGGAGAAAATCTATTTCGAAGTCGTTTTCCTATCTAAAAAACAGGAAAACTATTTACAAATAGGAAAACGATTTTYAGTACATTTTCACGCTTCCATTTACCTTTTGGTAAATGATTCAGTTGATTTTCTGAGGATAAATGATTTACAAAAGTGAATTTCATGAATACGGCCTCTGTTGTAGGGAAATCATGTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36295</snp_id>
        <super_contig>c010901107.Contig1</super_contig>
        <contig_pos>4480</contig_pos>
        <strand></strand>
        <context>attttctgag[G/A]rtaaatgatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTCACGCTTCCATTTACCTTTTGGTAAATGATTCAGTTGATTTTCTGAG</left_flank>
        <right_flank>ATAAATGATTTACAAAAGTGAATTTCATGAATACGGCCTCTGTTGTAGGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAATCTGAAATGATGAAAACCTGAATATCATATGGCCGTATTTATAAAATTAACTTTTGTGAATCATTTACTCTCGAAAAAACAACTGAAAAACGTGAAAATTAAAGGAAAATCATTTCCTTTTTGGTAAATAGGGGTACCAATTTTGTTTGCTGTTTACAACCACTTTTTGGAAACTTTTCATTCCAAAAAAGTTATGTATGAAAAGAATAGTATTGTAACATCAATATTATCTAACTTTGAACTGATATTTCGTTTCGGTTCAACTCAAATATTATGATTTTTGTTACAAATGACATGAATGAATAGATCATTGAATTTAAAGTAATTTGTCAAAAAATGAGCATCTTTCAGTTTATAGTAATGGAGAAAATCTATTTCGAAGTCGTTTTCCTATCTAAAAAACAGGAAAACTATTTACAAATAGGAAAACGATTTTTAGTACATTTTCACGCTTCCATTTACCTTTTGGTAAATGATTCAGTTGATTTTCTGAGGATAAATGATTTACAAAAGTGAATTTCATGAATACGGCCTCTGTTGTAGGGAAATCATGTTCATTTTAAAGTTCTCAATCTCATGAAAATAATTTATTGATAACCGTGAAAAACGAGAGTAGGTAATTTTCAAACAGAAATATTTGTTATGAATAAAATAACCAGGAATAAGGAAAATACAAATTTGGAAACACTTGAAAATTAAAAACATAAAAGATCATGGAACATTTTACCAGTTCGAATTAATTTGCAGTGTTGTATGTGAAGAATTCCGATGATTCAAAATTGACCTAACAAGGGAACCATGTTTAGCCTTCATCTCAGAATTTTTTCTAAATTTGCTCATTTATAGTTTCAAACACGGGCTTTTTTGTGGTCTATTTAGTTCTCTGTCCAAATTTCTAGAAGTCGAGTTATGGGCTGTTTAAGTGATTTCAGTACTAATTGCTCACTTTTGGAGTGAGTTTTTGAAAGGGTTAATGGGAGTTTCTTGGCATTGTT</canonical>
            <polymorphic>ACCAATCTGAAATGATGAAAACCTGAATATCATATGGCCGTATTTATAAAATTAACTTTTGTGAATCATTTACTCTCGAAAAAACAACTGAAAAACGTGAAAATTAAAGGAAAATCATTTCCTTTTTGGTAAATAGGGGTACCAATTTTGTTTGCTGTTTACAACCACTTTTTGGAAACTTTTCATTCCAAAAAAGTTATGTATGAAAAGAATAGTATTGTAACATCAATATTATCTAACTTTGAACTGATATTTCGTTTCGGTTCAACTCAAATATTATGATTTTTGTTACAAATGACATGAATGAATAGATCATTGAATTTAAAGTAATTTGTCAAAAAATGAGCATCTTTCAGTTTATAGTAATGGAGAAAATCTATTTCGAAGTCGTTTTCCTATCTAAAAAACAGGAAAACTATTTACAAATAGGAAAACGATTTTTAGTACATTTTCACGCTTCCATTTACCTTTTGGTAAATGATTCAGTTGATTTTCTGAGRATAAATGATTTACAAAAGTGAATTTCATGAATACGGCCTCTGTTGTAGGGAAATCATGTTCATTTTAAAGTTCTCAATCTCATGAAAATAATTTATTGATAACCGTGAAAAACGAGAGTAGGTAATTTTCAAACAGAAATATTTGTTATGAATAAAATAACCAGGAATAAGGAAAATACAAATTTGGAAACACTTGAAAATTAAAAACATAAAAGATCATGGAACATTTTACCAGTTCGAATTAATTTGCAGTGTTGTATGTGAAGAATTCCGATGATTCAAAATTGACCTAACAAGGGAACCATGTTTAGCCTTCATCTCAGAATTTTTTCTAAATTTGCTCATTTATAGTTTCAAACACGGGCTTTTTTGTGGTCTATTTAGTTCTCTGTCCAAATTTCTAGAAGTCGAGTTATGGGCTGTTTAAGTGATTTCAGTACTAATTGCTCACTTTTGGAGTGAGTTTTTGAAAGGGTTAATGGGAGTTTCTTGGCATTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATGATGAAAACCTGAATATC</pcr_primer_p1>
		<pcr_primer_p2>ATGAACATGATTTCCCTACAAC</pcr_primer_p2>
		<pcr_amplicon_size>555</pcr_amplicon_size>
		<canonical_amplicon>GAAATGATGAAAACCTGAATATCATATGGCCGTATTTATAAAATTAACTTTTGTGAATCATTTACTCTCGAAAAAACAACTGAAAAACGTGAAAATTAAAGGAAAATCATTTCCTTTTTGGTAAATAGGGGTACCAATTTTGTTTGCTGTTTACAACCACTTTTTGGAAACTTTTCATTCCAAAAAAGTTATGTATGAAAAGAATAGTATTGTAACATCAATATTATCTAACTTTGAACTGATATTTCGTTTCGGTTCAACTCAAATATTATGATTTTTGTTACAAATGACATGAATGAATAGATCATTGAATTTAAAGTAATTTGTCAAAAAATGAGCATCTTTCAGTTTATAGTAATGGAGAAAATCTATTTCGAAGTCGTTTTCCTATCTAAAAAACAGGAAAACTATTTACAAATAGGAAAACGATTTTTAGTACATTTTCACGCTTCCATTTACCTTTTGGTAAATGATTCAGTTGATTTTCTGAGGATAAATGATTTACAAAAGTGAATTTCATGAATACGGCCTCTGTTGTAGGGAAATCATGTTCAT</canonical_amplicon>
		<polymorphic_amplicon>GAAATGATGAAAACCTGAATATCATATGGCCGTATTTATAAAATTAACTTTTGTGAATCATTTACTCTCGAAAAAACAACTGAAAAACGTGAAAATTAAAGGAAAATCATTTCCTTTTTGGTAAATAGGGGTACCAATTTTGTTTGCTGTTTACAACCACTTTTTGGAAACTTTTCATTCCAAAAAAGTTATGTATGAAAAGAATAGTATTGTAACATCAATATTATCTAACTTTGAACTGATATTTCGTTTCGGTTCAACTCAAATATTATGATTTTTGTTACAAATGACATGAATGAATAGATCATTGAATTTAAAGTAATTTGTCAAAAAATGAGCATCTTTCAGTTTATAGTAATGGAGAAAATCTATTTCGAAGTCGTTTTCCTATCTAAAAAACAGGAAAACTATTTACAAATAGGAAAACGATTTTTAGTACATTTTCACGCTTCCATTTACCTTTTGGTAAATGATTCAGTTGATTTTCTGAGRATAAATGATTTACAAAAGTGAATTTCATGAATACGGCCTCTGTTGTAGGGAAATCATGTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36296</snp_id>
        <super_contig>c010901107.Contig1</super_contig>
        <contig_pos>4481</contig_pos>
        <strand></strand>
        <context>ttttctgagr[A/G]taaatgattt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCACGCTTCCATTTACCTTTTGGTAAATGATTCAGTTGATTTTCTGAGG</left_flank>
        <right_flank>TAAATGATTTACAAAAGTGAATTTCATGAATACGGCCTCTGTTGTAGGGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAATCTGAAATGATGAAAACCTGAATATCATATGGCCGTATTTATAAAATTAACTTTTGTGAATCATTTACTCTCGAAAAAACAACTGAAAAACGTGAAAATTAAAGGAAAATCATTTCCTTTTTGGTAAATAGGGGTACCAATTTTGTTTGCTGTTTACAACCACTTTTTGGAAACTTTTCATTCCAAAAAAGTTATGTATGAAAAGAATAGTATTGTAACATCAATATTATCTAACTTTGAACTGATATTTCGTTTCGGTTCAACTCAAATATTATGATTTTTGTTACAAATGACATGAATGAATAGATCATTGAATTTAAAGTAATTTGTCAAAAAATGAGCATCTTTCAGTTTATAGTAATGGAGAAAATCTATTTCGAAGTCGTTTTCCTATCTAAAAAACAGGAAAACTATTTACAAATAGGAAAACGATTTTTAGTACATTTTCACGCTTCCATTTACCTTTTGGTAAATGATTCAGTTGATTTTCTGAGGATAAATGATTTACAAAAGTGAATTTCATGAATACGGCCTCTGTTGTAGGGAAATCATGTTCATTTTAAAGTTCTCAATCTCATGAAAATAATTTATTGATAACCGTGAAAAACGAGAGTAGGTAATTTTCAAACAGAAATATTTGTTATGAATAAAATAACCAGGAATAAGGAAAATACAAATTTGGAAACACTTGAAAATTAAAAACATAAAAGATCATGGAACATTTTACCAGTTCGAATTAATTTGCAGTGTTGTATGTGAAGAATTCCGATGATTCAAAATTGACCTAACAAGGGAACCATGTTTAGCCTTCATCTCAGAATTTTTTCTAAATTTGCTCATTTATAGTTTCAAACACGGGCTTTTTTGTGGTCTATTTAGTTCTCTGTCCAAATTTCTAGAAGTCGAGTTATGGGCTGTTTAAGTGATTTCAGTACTAATTGCTCACTTTTGGAGTGAGTTTTTGAAAGGGTTAATGGGAGTTTCTTGGCATTGTTT</canonical>
            <polymorphic>CCAATCTGAAATGATGAAAACCTGAATATCATATGGCCGTATTTATAAAATTAACTTTTGTGAATCATTTACTCTCGAAAAAACAACTGAAAAACGTGAAAATTAAAGGAAAATCATTTCCTTTTTGGTAAATAGGGGTACCAATTTTGTTTGCTGTTTACAACCACTTTTTGGAAACTTTTCATTCCAAAAAAGTTATGTATGAAAAGAATAGTATTGTAACATCAATATTATCTAACTTTGAACTGATATTTCGTTTCGGTTCAACTCAAATATTATGATTTTTGTTACAAATGACATGAATGAATAGATCATTGAATTTAAAGTAATTTGTCAAAAAATGAGCATCTTTCAGTTTATAGTAATGGAGAAAATCTATTTCGAAGTCGTTTTCCTATCTAAAAAACAGGAAAACTATTTACAAATAGGAAAACGATTTTTAGTACATTTTCACGCTTCCATTTACCTTTTGGTAAATGATTCAGTTGATTTTCTGAGGRTAAATGATTTACAAAAGTGAATTTCATGAATACGGCCTCTGTTGTAGGGAAATCATGTTCATTTTAAAGTTCTCAATCTCATGAAAATAATTTATTGATAACCGTGAAAAACGAGAGTAGGTAATTTTCAAACAGAAATATTTGTTATGAATAAAATAACCAGGAATAAGGAAAATACAAATTTGGAAACACTTGAAAATTAAAAACATAAAAGATCATGGAACATTTTACCAGTTCGAATTAATTTGCAGTGTTGTATGTGAAGAATTCCGATGATTCAAAATTGACCTAACAAGGGAACCATGTTTAGCCTTCATCTCAGAATTTTTTCTAAATTTGCTCATTTATAGTTTCAAACACGGGCTTTTTTGTGGTCTATTTAGTTCTCTGTCCAAATTTCTAGAAGTCGAGTTATGGGCTGTTTAAGTGATTTCAGTACTAATTGCTCACTTTTGGAGTGAGTTTTTGAAAGGGTTAATGGGAGTTTCTTGGCATTGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATGATGAAAACCTGAATATC</pcr_primer_p1>
		<pcr_primer_p2>ATGAACATGATTTCCCTACAAC</pcr_primer_p2>
		<pcr_amplicon_size>555</pcr_amplicon_size>
		<canonical_amplicon>GAAATGATGAAAACCTGAATATCATATGGCCGTATTTATAAAATTAACTTTTGTGAATCATTTACTCTCGAAAAAACAACTGAAAAACGTGAAAATTAAAGGAAAATCATTTCCTTTTTGGTAAATAGGGGTACCAATTTTGTTTGCTGTTTACAACCACTTTTTGGAAACTTTTCATTCCAAAAAAGTTATGTATGAAAAGAATAGTATTGTAACATCAATATTATCTAACTTTGAACTGATATTTCGTTTCGGTTCAACTCAAATATTATGATTTTTGTTACAAATGACATGAATGAATAGATCATTGAATTTAAAGTAATTTGTCAAAAAATGAGCATCTTTCAGTTTATAGTAATGGAGAAAATCTATTTCGAAGTCGTTTTCCTATCTAAAAAACAGGAAAACTATTTACAAATAGGAAAACGATTTTTAGTACATTTTCACGCTTCCATTTACCTTTTGGTAAATGATTCAGTTGATTTTCTGAGGATAAATGATTTACAAAAGTGAATTTCATGAATACGGCCTCTGTTGTAGGGAAATCATGTTCAT</canonical_amplicon>
		<polymorphic_amplicon>GAAATGATGAAAACCTGAATATCATATGGCCGTATTTATAAAATTAACTTTTGTGAATCATTTACTCTCGAAAAAACAACTGAAAAACGTGAAAATTAAAGGAAAATCATTTCCTTTTTGGTAAATAGGGGTACCAATTTTGTTTGCTGTTTACAACCACTTTTTGGAAACTTTTCATTCCAAAAAAGTTATGTATGAAAAGAATAGTATTGTAACATCAATATTATCTAACTTTGAACTGATATTTCGTTTCGGTTCAACTCAAATATTATGATTTTTGTTACAAATGACATGAATGAATAGATCATTGAATTTAAAGTAATTTGTCAAAAAATGAGCATCTTTCAGTTTATAGTAATGGAGAAAATCTATTTCGAAGTCGTTTTCCTATCTAAAAAACAGGAAAACTATTTACAAATAGGAAAACGATTTTTAGTACATTTTCACGCTTCCATTTACCTTTTGGTAAATGATTCAGTTGATTTTCTGAGGRTAAATGATTTACAAAAGTGAATTTCATGAATACGGCCTCTGTTGTAGGGAAATCATGTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36297</snp_id>
        <super_contig>c010901107.Contig1</super_contig>
        <contig_pos>4547</contig_pos>
        <strand></strand>
        <context>TGTTCATTTT[A/G]AAGTTCTYAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTGAATTTCATGAATACGGCCTCTGTTGTAGGGAAATCATGTTCATTTT</left_flank>
        <right_flank>AAGTTCTCAATCTCATGAAAATAATTTATTGATAACCGTGAAAAACGAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTACTCTCGAAAAAACAACTGAAAAACGTGAAAATTAAAGGAAAATCATTTCCTTTTTGGTAAATAGGGGTACCAATTTTGTTTGCTGTTTACAACCACTTTTTGGAAACTTTTCATTCCAAAAAAGTTATGTATGAAAAGAATAGTATTGTAACATCAATATTATCTAACTTTGAACTGATATTTCGTTTCGGTTCAACTCAAATATTATGATTTTTGTTACAAATGACATGAATGAATAGATCATTGAATTTAAAGTAATTTGTCAAAAAATGAGCATCTTTCAGTTTATAGTAATGGAGAAAATCTATTTCGAAGTCGTTTTCCTATCTAAAAAACAGGAAAACTATTTACAAATAGGAAAACGATTTTTAGTACATTTTCACGCTTCCATTTACCTTTTGGTAAATGATTCAGTTGATTTTCTGAGGATAAATGATTTACAAAAGTGAATTTCATGAATACGGCCTCTGTTGTAGGGAAATCATGTTCATTTTAAAGTTCTCAATCTCATGAAAATAATTTATTGATAACCGTGAAAAACGAGAGTAGGTAATTTTCAAACAGAAATATTTGTTATGAATAAAATAACCAGGAATAAGGAAAATACAAATTTGGAAACACTTGAAAATTAAAAACATAAAAGATCATGGAACATTTTACCAGTTCGAATTAATTTGCAGTGTTGTATGTGAAGAATTCCGATGATTCAAAATTGACCTAACAAGGGAACCATGTTTAGCCTTCATCTCAGAATTTTTTCTAAATTTGCTCATTTATAGTTTCAAACACGGGCTTTTTTGTGGTCTATTTAGTTCTCTGTCCAAATTTCTAGAAGTCGAGTTATGGGCTGTTTAAGTGATTTCAGTACTAATTGCTCACTTTTGGAGTGAGTTTTTGAAAGGGTTAATGGGAGTTTCTTGGCATTGTTTGAAAGTCAATCGCAATTTTAAAAGTTTCCCTACAATCTGACAAAGTTTCCTCTTTTTTCAAAAAAA</canonical>
            <polymorphic>ATTTACTCTCGAAAAAACAACTGAAAAACGTGAAAATTAAAGGAAAATCATTTCCTTTTTGGTAAATAGGGGTACCAATTTTGTTTGCTGTTTACAACCACTTTTTGGAAACTTTTCATTCCAAAAAAGTTATGTATGAAAAGAATAGTATTGTAACATCAATATTATCTAACTTTGAACTGATATTTCGTTTCGGTTCAACTCAAATATTATGATTTTTGTTACAAATGACATGAATGAATAGATCATTGAATTTAAAGTAATTTGTCAAAAAATGAGCATCTTTCAGTTTATAGTAATGGAGAAAATCTATTTCGAAGTCGTTTTCCTATCTAAAAAACAGGAAAACTATTTACAAATAGGAAAACGATTTTTAGTACATTTTCACGCTTCCATTTACCTTTTGGTAAATGATTCAGTTGATTTTCTGAGGATAAATGATTTACAAAAGTGAATTTCATGAATACGGCCTCTGTTGTAGGGAAATCATGTTCATTTTRAAGTTCTCAATCTCATGAAAATAATTTATTGATAACCGTGAAAAACGAGAGTAGGTAATTTTCAAACAGAAATATTTGTTATGAATAAAATAACCAGGAATAAGGAAAATACAAATTTGGAAACACTTGAAAATTAAAAACATAAAAGATCATGGAACATTTTACCAGTTCGAATTAATTTGCAGTGTTGTATGTGAAGAATTCCGATGATTCAAAATTGACCTAACAAGGGAACCATGTTTAGCCTTCATCTCAGAATTTTTTCTAAATTTGCTCATTTATAGTTTCAAACACGGGCTTTTTTGTGGTCTATTTAGTTCTCTGTCCAAATTTCTAGAAGTCGAGTTATGGGCTGTTTAAGTGATTTCAGTACTAATTGCTCACTTTTGGAGTGAGTTTTTGAAAGGGTTAATGGGAGTTTCTTGGCATTGTTTGAAAGTCAATCGCAATTTTAAAAGTTTCCCTACAATCTGACAAAGTTTCCTCTTTTTTCAAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>454 256 243 47</canonical_bands>
                <polymorphic_bands>697 256 47</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>243 218 182 136 52 48 43 41 37</canonical_bands>
                <polymorphic_bands>379 218 182 52 48 43 41 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATGATGAAAACCTGAATATC</pcr_primer_p1>
		<pcr_primer_p2>TTCTGTTTGAAAATTACCTACTCTC</pcr_primer_p2>
		<pcr_amplicon_size>630</pcr_amplicon_size>
		<canonical_amplicon>TAAAGTTCTCAATCTCATGAAAATAATTTATTGATAACCGTGAAAAACGAGAGTAGGTAATTTTCAAACAGAA</canonical_amplicon>
		<polymorphic_amplicon>TRAAGTTCTCAATCTCATGAAAATAATTTATTGATAACCGTGAAAAACGAGAGTAGGTAATTTTCAAACAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36298</snp_id>
        <super_contig>c010901107.Contig1</super_contig>
        <contig_pos>4555</contig_pos>
        <strand></strand>
        <context>TTRAAGTTCT[C/T]AATCTCATGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATGAATACGGCCTCTGTTGTAGGGAAATCATGTTCATTTTAAAGTTCT</left_flank>
        <right_flank>AATCTCATGAAAATAATTTATTGATAACCGTGAAAAACGAGAGTAGGTAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGAAAAAACAACTGAAAAACGTGAAAATTAAAGGAAAATCATTTCCTTTTTGGTAAATAGGGGTACCAATTTTGTTTGCTGTTTACAACCACTTTTTGGAAACTTTTCATTCCAAAAAAGTTATGTATGAAAAGAATAGTATTGTAACATCAATATTATCTAACTTTGAACTGATATTTCGTTTCGGTTCAACTCAAATATTATGATTTTTGTTACAAATGACATGAATGAATAGATCATTGAATTTAAAGTAATTTGTCAAAAAATGAGCATCTTTCAGTTTATAGTAATGGAGAAAATCTATTTCGAAGTCGTTTTCCTATCTAAAAAACAGGAAAACTATTTACAAATAGGAAAACGATTTTTAGTACATTTTCACGCTTCCATTTACCTTTTGGTAAATGATTCAGTTGATTTTCTGAGGATAAATGATTTACAAAAGTGAATTTCATGAATACGGCCTCTGTTGTAGGGAAATCATGTTCATTTTAAAGTTCTCAATCTCATGAAAATAATTTATTGATAACCGTGAAAAACGAGAGTAGGTAATTTTCAAACAGAAATATTTGTTATGAATAAAATAACCAGGAATAAGGAAAATACAAATTTGGAAACACTTGAAAATTAAAAACATAAAAGATCATGGAACATTTTACCAGTTCGAATTAATTTGCAGTGTTGTATGTGAAGAATTCCGATGATTCAAAATTGACCTAACAAGGGAACCATGTTTAGCCTTCATCTCAGAATTTTTTCTAAATTTGCTCATTTATAGTTTCAAACACGGGCTTTTTTGTGGTCTATTTAGTTCTCTGTCCAAATTTCTAGAAGTCGAGTTATGGGCTGTTTAAGTGATTTCAGTACTAATTGCTCACTTTTGGAGTGAGTTTTTGAAAGGGTTAATGGGAGTTTCTTGGCATTGTTTGAAAGTCAATCGCAATTTTAAAAGTTTCCCTACAATCTGACAAAGTTTCCTCTTTTTTCAAAAAAAAAATTTTT</canonical>
            <polymorphic>TCGAAAAAACAACTGAAAAACGTGAAAATTAAAGGAAAATCATTTCCTTTTTGGTAAATAGGGGTACCAATTTTGTTTGCTGTTTACAACCACTTTTTGGAAACTTTTCATTCCAAAAAAGTTATGTATGAAAAGAATAGTATTGTAACATCAATATTATCTAACTTTGAACTGATATTTCGTTTCGGTTCAACTCAAATATTATGATTTTTGTTACAAATGACATGAATGAATAGATCATTGAATTTAAAGTAATTTGTCAAAAAATGAGCATCTTTCAGTTTATAGTAATGGAGAAAATCTATTTCGAAGTCGTTTTCCTATCTAAAAAACAGGAAAACTATTTACAAATAGGAAAACGATTTTTAGTACATTTTCACGCTTCCATTTACCTTTTGGTAAATGATTCAGTTGATTTTCTGAGGATAAATGATTTACAAAAGTGAATTTCATGAATACGGCCTCTGTTGTAGGGAAATCATGTTCATTTTAAAGTTCTYAATCTCATGAAAATAATTTATTGATAACCGTGAAAAACGAGAGTAGGTAATTTTCAAACAGAAATATTTGTTATGAATAAAATAACCAGGAATAAGGAAAATACAAATTTGGAAACACTTGAAAATTAAAAACATAAAAGATCATGGAACATTTTACCAGTTCGAATTAATTTGCAGTGTTGTATGTGAAGAATTCCGATGATTCAAAATTGACCTAACAAGGGAACCATGTTTAGCCTTCATCTCAGAATTTTTTCTAAATTTGCTCATTTATAGTTTCAAACACGGGCTTTTTTGTGGTCTATTTAGTTCTCTGTCCAAATTTCTAGAAGTCGAGTTATGGGCTGTTTAAGTGATTTCAGTACTAATTGCTCACTTTTGGAGTGAGTTTTTGAAAGGGTTAATGGGAGTTTCTTGGCATTGTTTGAAAGTCAATCGCAATTTTAAAAGTTTCCCTACAATCTGACAAAGTTTCCTCTTTTTTCAAAAAAAAAATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATGATGAAAACCTGAATATC</pcr_primer_p1>
		<pcr_primer_p2>TTCTGTTTGAAAATTACCTACTCTC</pcr_primer_p2>
		<pcr_amplicon_size>630</pcr_amplicon_size>
		<canonical_amplicon>TCAATCTCATGAAAATAATTTATTGATAACCGTGAAAAACGAGAGTAGGTAATTTTCAAACAGAA</canonical_amplicon>
		<polymorphic_amplicon>TYAATCTCATGAAAATAATTTATTGATAACCGTGAAAAACGAGAGTAGGTAATTTTCAAACAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36299</snp_id>
        <super_contig>c010901107.Contig1</super_contig>
        <contig_pos>4590</contig_pos>
        <strand></strand>
        <context>TAACCGTGAA[A/G]AACGAGAGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATTTTAAAGTTCTCAATCTCATGAAAATAATTTATTGATAACCGTGAA</left_flank>
        <right_flank>AACGAGAGTAGGTAATTTTCAAACAGAAATATTTGTTATGAATAAAATAA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATCATTTCCTTTTTGGTAAATAGGGGTACCAATTTTGTTTGCTGTTTACAACCACTTTTTGGAAACTTTTCATTCCAAAAAAGTTATGTATGAAAAGAATAGTATTGTAACATCAATATTATCTAACTTTGAACTGATATTTCGTTTCGGTTCAACTCAAATATTATGATTTTTGTTACAAATGACATGAATGAATAGATCATTGAATTTAAAGTAATTTGTCAAAAAATGAGCATCTTTCAGTTTATAGTAATGGAGAAAATCTATTTCGAAGTCGTTTTCCTATCTAAAAAACAGGAAAACTATTTACAAATAGGAAAACGATTTTTAGTACATTTTCACGCTTCCATTTACCTTTTGGTAAATGATTCAGTTGATTTTCTGAGGATAAATGATTTACAAAAGTGAATTTCATGAATACGGCCTCTGTTGTAGGGAAATCATGTTCATTTTAAAGTTCTCAATCTCATGAAAATAATTTATTGATAACCGTGAAAAACGAGAGTAGGTAATTTTCAAACAGAAATATTTGTTATGAATAAAATAACCAGGAATAAGGAAAATACAAATTTGGAAACACTTGAAAATTAAAAACATAAAAGATCATGGAACATTTTACCAGTTCGAATTAATTTGCAGTGTTGTATGTGAAGAATTCCGATGATTCAAAATTGACCTAACAAGGGAACCATGTTTAGCCTTCATCTCAGAATTTTTTCTAAATTTGCTCATTTATAGTTTCAAACACGGGCTTTTTTGTGGTCTATTTAGTTCTCTGTCCAAATTTCTAGAAGTCGAGTTATGGGCTGTTTAAGTGATTTCAGTACTAATTGCTCACTTTTGGAGTGAGTTTTTGAAAGGGTTAATGGGAGTTTCTTGGCATTGTTTGAAAGTCAATCGCAATTTTAAAAGTTTCCCTACAATCTGACAAAGTTTCCTCTTTTTTCAAAAAAAAAATTTTTTTGGAAAAAATTTTGCTATGGGTACCCTTTGCGAA</canonical>
            <polymorphic>AAAATCATTTCCTTTTTGGTAAATAGGGGTACCAATTTTGTTTGCTGTTTACAACCACTTTTTGGAAACTTTTCATTCCAAAAAAGTTATGTATGAAAAGAATAGTATTGTAACATCAATATTATCTAACTTTGAACTGATATTTCGTTTCGGTTCAACTCAAATATTATGATTTTTGTTACAAATGACATGAATGAATAGATCATTGAATTTAAAGTAATTTGTCAAAAAATGAGCATCTTTCAGTTTATAGTAATGGAGAAAATCTATTTCGAAGTCGTTTTCCTATCTAAAAAACAGGAAAACTATTTACAAATAGGAAAACGATTTTTAGTACATTTTCACGCTTCCATTTACCTTTTGGTAAATGATTCAGTTGATTTTCTGAGGATAAATGATTTACAAAAGTGAATTTCATGAATACGGCCTCTGTTGTAGGGAAATCATGTTCATTTTAAAGTTCTCAATCTCATGAAAATAATTTATTGATAACCGTGAARAACGAGAGTAGGTAATTTTCAAACAGAAATATTTGTTATGAATAAAATAACCAGGAATAAGGAAAATACAAATTTGGAAACACTTGAAAATTAAAAACATAAAAGATCATGGAACATTTTACCAGTTCGAATTAATTTGCAGTGTTGTATGTGAAGAATTCCGATGATTCAAAATTGACCTAACAAGGGAACCATGTTTAGCCTTCATCTCAGAATTTTTTCTAAATTTGCTCATTTATAGTTTCAAACACGGGCTTTTTTGTGGTCTATTTAGTTCTCTGTCCAAATTTCTAGAAGTCGAGTTATGGGCTGTTTAAGTGATTTCAGTACTAATTGCTCACTTTTGGAGTGAGTTTTTGAAAGGGTTAATGGGAGTTTCTTGGCATTGTTTGAAAGTCAATCGCAATTTTAAAAGTTTCCCTACAATCTGACAAAGTTTCCTCTTTTTTCAAAAAAAAAATTTTTTTGGAAAAAATTTTGCTATGGGTACCCTTTGCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTAGGGAAATCATGTTCATT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAATCATCGGAATTCTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTGTAGGGAAATCATGTTCATTTTAAAGTTCTCAATCTCATGAAAATAATTTATTGATAACCGTGAAAAACGAGAGTAGGTAATTTTCAAACAGAAATATTTGTTATGAATAAAATAACCAGGAATAAGGAAAATACAAATTTGGAAACACTTGAAAATTAAAAACATAAAAGATCATGGAACATTTTACCAGTTCGAATTAATTTGCAGTGTTGTATGTGAAGAATTCCGATGATTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTGTAGGGAAATCATGTTCATTTTAAAGTTCTCAATCTCATGAAAATAATTTATTGATAACCGTGAARAACGAGAGTAGGTAATTTTCAAACAGAAATATTTGTTATGAATAAAATAACCAGGAATAAGGAAAATACAAATTTGGAAACACTTGAAAATTAAAAACATAAAAGATCATGGAACATTTTACCAGTTCGAATTAATTTGCAGTGTTGTATGTGAAGAATTCCGATGATTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36306</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>457</contig_pos>
        <strand></strand>
        <context>CTATTAAAGG[G/A]aaaataataa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGG</left_flank>
        <right_flank>AAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTA</canonical>
            <polymorphic>TCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGRAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGGAACTTTACCTTATCAA</pcr_primer_p1>
		<pcr_primer_p2>TAATTTTGTTAATTGGGAGACTG</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGRAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTGCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTA</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGRAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36307</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>493</contig_pos>
        <strand></strand>
        <context>taCTTCCAGA[A/G]AGCTCTTCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGA</left_flank>
        <right_flank>AGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTA</canonical>
            <polymorphic>TCATATTTTAAATATAAACTAAAAGAGTAAAAAAAAATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGARAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGGAACTTTACCTTATCAA</pcr_primer_p1>
		<pcr_primer_p2>TAATTTTGTTAATTGGGAGACTG</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGARAGCTCTACATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTA</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGARAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36308</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>535</contig_pos>
        <strand></strand>
        <context>TTAACCAAAA[C/T]CTAAAAGCYA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAA</left_flank>
        <right_flank>CTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCAC</canonical>
            <polymorphic>AATCTCAAACCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAAYCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGGAACTTTACCTTATCAA</pcr_primer_p1>
		<pcr_primer_p2>TAATTTTGTTAATTGGGAGACTG</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTA</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAAYCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36309</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>544</contig_pos>
        <strand></strand>
        <context>AYCTAAAAGC[C/T]AATACRGATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGC</left_flank>
        <right_flank>AATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTT</canonical>
            <polymorphic>CCTAGACCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCYAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>502 260 191 47</canonical_bands>
                <polymorphic_bands>549 260 191</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGGAACTTTACCTTATCAA</pcr_primer_p1>
		<pcr_primer_p2>TAATTTTGTTAATTGGGAGACTG</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTA</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCYAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36310</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>550</contig_pos>
        <strand></strand>
        <context>AAGCYAATAC[G/A]GATAARAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATAC</left_flank>
        <right_flank>GATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAA</canonical>
            <polymorphic>CCCAAAGTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACRGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGGAACTTTACCTTATCAA</pcr_primer_p1>
		<pcr_primer_p2>TAATTTTGTTAATTGGGAGACTG</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTA</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACRGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36311</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>556</contig_pos>
        <strand></strand>
        <context>ATACRGATAA[G/A]AACATACTRA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAA</left_flank>
        <right_flank>AACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAAT</canonical>
            <polymorphic>GTAACTATTAAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAARAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGGAACTTTACCTTATCAA</pcr_primer_p1>
		<pcr_primer_p2>TAATTTTGTTAATTGGGAGACTG</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTA</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAARAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36312</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>565</contig_pos>
        <strand></strand>
        <context>ARAACATACT[A/G]AAAAGCAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACT</left_flank>
        <right_flank>AAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTG</canonical>
            <polymorphic>AAAAAACCTATTTGTGACAGTGACCTCAAGGTTACCACCTTATTCAAATCTTCTTTTACCAGTTTTACTAGTCTAGAAAAACCATAGTAAATAGACCAATAATTAGTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTRAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGGAACTTTACCTTATCAA</pcr_primer_p1>
		<pcr_primer_p2>TAATTTTGTTAATTGGGAGACTG</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTA</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTRAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36313</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>670</contig_pos>
        <strand></strand>
        <context>AAAATACTAA[A/C]GCAGTCTCCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAA</left_flank>
        <right_flank>GCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGA</right_flank>
        <qual_score>47</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAAC</canonical>
            <polymorphic>GTACAAACCTGATAAAATTTTTTGTAAAATTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAMGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGGAACTTTACCTTATCAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTTTGGGGTTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>428</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAAT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAMGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36314</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>699</contig_pos>
        <strand></strand>
        <context>AAATTATAAC[C/T]TGAAGATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAAC</left_flank>
        <right_flank>TGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAAT</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAAAATTC</canonical>
            <polymorphic>TTAAATTATTAAAATTCATCAATAAAATTAAACCAGCTGTAACCAGAGTAAATGTAACTAAACTCTTTTGTACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACYTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAAAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGGAACTTTACCTTATCAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTTTGGGGTTGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>428</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAAT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACYTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36315</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>769</contig_pos>
        <strand></strand>
        <context>GGTATAATGT[A/G]TTAAACATGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGT</left_flank>
        <right_flank>TTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGT</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAAAATTCTTCATCACACAATAATATTGTTTGTAAGTAATCTTAAAACTGTTAAAAAAATAGTAAACAGAGAAATAAA</canonical>
            <polymorphic>TACCAAAAACAAATATTTTTTTCTAAACTAAGTCACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTRTTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAAAATTCTTCATCACACAATAATATTGTTTGTAAGTAATCTTAAAACTGTTAAAAAAATAGTAAACAGAGAAATAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTCTCCCAATTAACAAAATTA</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAAAGTTACCCTTTTTAACTA</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>CAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>CAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTRTTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36316</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>802</contig_pos>
        <strand></strand>
        <context>CCAAAACAAT[T/C]CAATTAAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAAT</left_flank>
        <right_flank>CAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAAAATTCTTCATCACACAATAATATTGTTTGTAAGTAATCTTAAAACTGTTAAAAAAATAGTAAACAGAGAAATAAAAACAATCAAAAGTGAGCAGGATTTAACCTAGAA</canonical>
            <polymorphic>CACATAAAGATGACAAATCTTTTTGGACCGTAACCAAACATAGTAATATCTATTTAGCATCTTACTTCTCCCAAAAGGAACTTTACCTTATCAAGATAACATAATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATYCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAAAATTCTTCATCACACAATAATATTGTTTGTAAGTAATCTTAAAACTGTTAAAAAAATAGTAAACAGAGAAATAAAAACAATCAAAAGTGAGCAGGATTTAACCTAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>135 108 107 77 69 64 63 59 48 43 33 27 25 23 22 18 18 17 15 9 8 7 5</canonical_bands>
                <polymorphic_bands>135 108 107 77 74 64 63 59 48 43 33 27 25 23 22 18 18 17 15 9 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTCTCCCAATTAACAAAATTA</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAAAGTTACCCTTTTTAACTA</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>CAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>CAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATYCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36317</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>905</contig_pos>
        <strand></strand>
        <context>CAAAATATAC[A/G]CAGATCTAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATAC</left_flank>
        <right_flank>CAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTT</right_flank>
        <qual_score>51</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAAAATTCTTCATCACACAATAATATTGTTTGTAAGTAATCTTAAAACTGTTAAAAAAATAGTAAACAGAGAAATAAAAACAATCAAAAGTGAGCAGGATTTAACCTAGAACAAATTTAGAAGACTTGCTTTATGAACTCACTAGTTGACTTATATCTTTTGCGCTTAAAACAAATGCACTTCTTATGCTATATCAACTAAGACGTGGTTCACC</canonical>
            <polymorphic>ATATAATTTTACTAGCAAAAGTAATTAAATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACRCAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAAAATTCTTCATCACACAATAATATTGTTTGTAAGTAATCTTAAAACTGTTAAAAAAATAGTAAACAGAGAAATAAAAACAATCAAAAGTGAGCAGGATTTAACCTAGAACAAATTTAGAAGACTTGCTTTATGAACTCACTAGTTGACTTATATCTTTTGCGCTTAAAACAAATGCACTTCTTATGCTATATCAACTAAGACGTGGTTCACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>276 183 126 103 75 49 41 39 38 28 28 5 3 2 2 2</canonical_bands>
                <polymorphic_bands>402 183 103 75 49 41 39 38 28 28 5 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACAACCCCAAAACAAT</pcr_primer_p1>
		<pcr_primer_p2>TGCTCTTATATGATTTTTAACTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>201</pcr_amplicon_size>
		<canonical_amplicon>AAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCA</canonical_amplicon>
		<polymorphic_amplicon>AAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACRCAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36318</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>933</contig_pos>
        <strand></strand>
        <context>ATCTGCAATA[G/A]AATAGTTAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATA</left_flank>
        <right_flank>AATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCAT</right_flank>
        <qual_score>49</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAAAATTCTTCATCACACAATAATATTGTTTGTAAGTAATCTTAAAACTGTTAAAAAAATAGTAAACAGAGAAATAAAAACAATCAAAAGTGAGCAGGATTTAACCTAGAACAAATTTAGAAGACTTGCTTTATGAACTCACTAGTTGACTTATATCTTTTGCGCTTAAAACAAATGCACTTCTTATGCTATATCAACTAAGACGTGGTTCACCATTTCCAAATTAAAAGTTTGGCACTTTA</canonical>
            <polymorphic>ATAATAGAAATCACTATTAAAGGGAAAATAATAAAATAATTTATTTTATTACTTCCAGAAAGCTCTTCATTATTTTTTATTCTTAAATTGATTAACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATARAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAAAATTCTTCATCACACAATAATATTGTTTGTAAGTAATCTTAAAACTGTTAAAAAAATAGTAAACAGAGAAATAAAAACAATCAAAAGTGAGCAGGATTTAACCTAGAACAAATTTAGAAGACTTGCTTTATGAACTCACTAGTTGACTTATATCTTTTGCGCTTAAAACAAATGCACTTCTTATGCTATATCAACTAAGACGTGGTTCACCATTTCCAAATTAAAAGTTTGGCACTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTAAAAGACTCGGTTGAAG</pcr_primer_p1>
		<pcr_primer_p2>CAAGAGTCCTTAGGTTTATTATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>CAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTG</canonical_amplicon>
		<polymorphic_amplicon>CAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATARAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36319</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>1026</contig_pos>
        <strand></strand>
        <context>CAAAAATGAA[G/A]AGGTGCYACA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAA</left_flank>
        <right_flank>AGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCAC</right_flank>
        <qual_score>49</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAAAATTCTTCATCACACAATAATATTGTTTGTAAGTAATCTTAAAACTGTTAAAAAAATAGTAAACAGAGAAATAAAAACAATCAAAAGTGAGCAGGATTTAACCTAGAACAAATTTAGAAGACTTGCTTTATGAACTCACTAGTTGACTTATATCTTTTGCGCTTAAAACAAATGCACTTCTTATGCTATATCAACTAAGACGTGGTTCACCATTTCCAAATTAAAAGTTTGGCACTTTAAAACTTAAGTTAACATCTTTTTTTTTTACTCGTTAAGATATAAAAAGATTAAACGAGAAAAAATATAACTTTGAATAAAAAACACAAAACACT</canonical>
            <polymorphic>AACCAAAACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAARAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAAAATTCTTCATCACACAATAATATTGTTTGTAAGTAATCTTAAAACTGTTAAAAAAATAGTAAACAGAGAAATAAAAACAATCAAAAGTGAGCAGGATTTAACCTAGAACAAATTTAGAAGACTTGCTTTATGAACTCACTAGTTGACTTATATCTTTTGCGCTTAAAACAAATGCACTTCTTATGCTATATCAACTAAGACGTGGTTCACCATTTCCAAATTAAAAGTTTGGCACTTTAAAACTTAAGTTAACATCTTTTTTTTTTACTCGTTAAGATATAAAAAGATTAAACGAGAAAAAATATAACTTTGAATAAAAAACACAAAACACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAAGTTAAAAATCATATAAGAGC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGTTAATGACGGTGGT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAARAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36320</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>1033</contig_pos>
        <strand></strand>
        <context>GAARAGGTGC[C/T]ACACCaattt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGC</left_flank>
        <right_flank>ACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAAAATTCTTCATCACACAATAATATTGTTTGTAAGTAATCTTAAAACTGTTAAAAAAATAGTAAACAGAGAAATAAAAACAATCAAAAGTGAGCAGGATTTAACCTAGAACAAATTTAGAAGACTTGCTTTATGAACTCACTAGTTGACTTATATCTTTTGCGCTTAAAACAAATGCACTTCTTATGCTATATCAACTAAGACGTGGTTCACCATTTCCAAATTAAAAGTTTGGCACTTTAAAACTTAAGTTAACATCTTTTTTTTTTACTCGTTAAGATATAAAAAGATTAAACGAGAAAAAATATAACTTTGAATAAAAAACACAAAACACTCTATCAT</canonical>
            <polymorphic>ACCTAAAAGCCAATACGGATAAGAACATACTAAAAAGCAATAATAAAGTAAAAAATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCYACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAAAATTCTTCATCACACAATAATATTGTTTGTAAGTAATCTTAAAACTGTTAAAAAAATAGTAAACAGAGAAATAAAAACAATCAAAAGTGAGCAGGATTTAACCTAGAACAAATTTAGAAGACTTGCTTTATGAACTCACTAGTTGACTTATATCTTTTGCGCTTAAAACAAATGCACTTCTTATGCTATATCAACTAAGACGTGGTTCACCATTTCCAAATTAAAAGTTTGGCACTTTAAAACTTAAGTTAACATCTTTTTTTTTTACTCGTTAAGATATAAAAAGATTAAACGAGAAAAAATATAACTTTGAATAAAAAACACAAAACACTCTATCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>276 126 103 96 89 75 49 39 38 28 28 25 9 7 5 3 2 2</canonical_bands>
                <polymorphic_bands>276 126 103 96 89 75 49 39 38 28 28 25 9 7 5 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAAAGTTAAAAATCATATAAGAGC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGTTAATGACGGTGGT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCYACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36321</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>1087</contig_pos>
        <strand></strand>
        <context>TTCTAAACAA[C/T]AAAAATAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAA</left_flank>
        <right_flank>AAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAAAATTCTTCATCACACAATAATATTGTTTGTAAGTAATCTTAAAACTGTTAAAAAAATAGTAAACAGAGAAATAAAAACAATCAAAAGTGAGCAGGATTTAACCTAGAACAAATTTAGAAGACTTGCTTTATGAACTCACTAGTTGACTTATATCTTTTGCGCTTAAAACAAATGCACTTCTTATGCTATATCAACTAAGACGTGGTTCACCATTTCCAAATTAAAAGTTTGGCACTTTAAAACTTAAGTTAACATCTTTTTTTTTTACTCGTTAAGATATAAAAAGATTAAACGAGAAAAAATATAACTTTGAATAAAAAACACAAAACACTCTATCATGATAGCAAAAATAGACAATCAAACATATTGATCTCCCATTCTTAATTCTAATCC</canonical>
            <polymorphic>ATCTATCAAATTTAAAAATTTCTCTCAATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAAYAAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAAAATTCTTCATCACACAATAATATTGTTTGTAAGTAATCTTAAAACTGTTAAAAAAATAGTAAACAGAGAAATAAAAACAATCAAAAGTGAGCAGGATTTAACCTAGAACAAATTTAGAAGACTTGCTTTATGAACTCACTAGTTGACTTATATCTTTTGCGCTTAAAACAAATGCACTTCTTATGCTATATCAACTAAGACGTGGTTCACCATTTCCAAATTAAAAGTTTGGCACTTTAAAACTTAAGTTAACATCTTTTTTTTTTACTCGTTAAGATATAAAAAGATTAAACGAGAAAAAATATAACTTTGAATAAAAAACACAAAACACTCTATCATGATAGCAAAAATAGACAATCAAACATATTGATCTCCCATTCTTAATTCTAATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAAGTTAAAAATCATATAAGAGC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGTTAATGACGGTGGT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAAYAAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36322</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>1114</contig_pos>
        <strand></strand>
        <context>AGGACTCTTG[A/G]ATAACAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTG</left_flank>
        <right_flank>ATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAAAATTCTTCATCACACAATAATATTGTTTGTAAGTAATCTTAAAACTGTTAAAAAAATAGTAAACAGAGAAATAAAAACAATCAAAAGTGAGCAGGATTTAACCTAGAACAAATTTAGAAGACTTGCTTTATGAACTCACTAGTTGACTTATATCTTTTGCGCTTAAAACAAATGCACTTCTTATGCTATATCAACTAAGACGTGGTTCACCATTTCCAAATTAAAAGTTTGGCACTTTAAAACTTAAGTTAACATCTTTTTTTTTTACTCGTTAAGATATAAAAAGATTAAACGAGAAAAAATATAACTTTGAATAAAAAACACAAAACACTCTATCATGATAGCAAAAATAGACAATCAAACATATTGATCTCCCATTCTTAATTCTAATCCTTGATAAAGCATTATTCTAATTAAATG</canonical>
            <polymorphic>ATGAAAAAATTTTCACAAAAAAAGAAACTCTAAATGGAATATTTAAAAATACTAAAGCAGTCTCCCAATTAACAAAATTATAACCTGAAGATTTTGAAAATTTAGAAATCAATAAAATTATTAATAAAAAATAATAAACAAAAAGGTATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTGRATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAAAATTCTTCATCACACAATAATATTGTTTGTAAGTAATCTTAAAACTGTTAAAAAAATAGTAAACAGAGAAATAAAAACAATCAAAAGTGAGCAGGATTTAACCTAGAACAAATTTAGAAGACTTGCTTTATGAACTCACTAGTTGACTTATATCTTTTGCGCTTAAAACAAATGCACTTCTTATGCTATATCAACTAAGACGTGGTTCACCATTTCCAAATTAAAAGTTTGGCACTTTAAAACTTAAGTTAACATCTTTTTTTTTTACTCGTTAAGATATAAAAAGATTAAACGAGAAAAAATATAACTTTGAATAAAAAACACAAAACACTCTATCATGATAGCAAAAATAGACAATCAAACATATTGATCTCCCATTCTTAATTCTAATCCTTGATAAAGCATTATTCTAATTAAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>496 421 83</canonical_bands>
                <polymorphic_bands>917 83</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAAAGTTAAAAATCATATAAGAGC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGTTAATGACGGTGGT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTGRATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36323</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>1260</contig_pos>
        <strand>+</strand>
        <context>ATAGTAAACA[A/G]AGAAATAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATAATATTGTTTGTAAGTAATCTTAAAACTGTTAAAAAAATAGTAAACA</left_flank>
        <right_flank>AGAAATAAAAACAATCAAAAGTGAGCAGGATTTAACCTAGAACAAATTTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAAAATTCTTCATCACACAATAATATTGTTTGTAAGTAATCTTAAAACTGTTAAAAAAATAGTAAACAGAGAAATAAAAACAATCAAAAGTGAGCAGGATTTAACCTAGAACAAATTTAGAAGACTTGCTTTATGAACTCACTAGTTGACTTATATCTTTTGCGCTTAAAACAAATGCACTTCTTATGCTATATCAACTAAGACGTGGTTCACCATTTCCAAATTAAAAGTTTGGCACTTTAAAACTTAAGTTAACATCTTTTTTTTTTACTCGTTAAGATATAAAAAGATTAAACGAGAAAAAATATAACTTTGAATAAAAAACACAAAACACTCTATCATGATAGCAAAAATAGACAATCAAACATATTGATCTCCCATTCTTAATTCTAATCCTTGATAAAGCATTATTCTAATTAAATGACCTACCATAATATTAACTGTTAAACGCACAGTCAAGGCCAAAGGACGTGAAAATTCCCTAACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGAAAATTTCTCCCTAGAAA</canonical>
            <polymorphic>TATAATGTATTAAACATGGAAAAAAACAACCCCAAAACAATTCAATTAAAAGACTCGGTTGAAGAAATAATTAATAAGTTTTTATAACTTTTTATAACAAAAATTTGAACATAACAAATTAATAAACCTATTAACAAAATATACACAGATCTAAGTCAAAAAATCTGCAATAGAATAGTTAAAAAGGGTAACTTTTGAAAAGTTAAAAATCATATAAGAGCATAGTTAAAAATATTATTAGTAACATTAAAAATTCAAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAAAATTCTTCATCACACAATAATATTGTTTGTAAGTAATCTTAAAACTGTTAAAAAAATAGTAAACARAGAAATAAAAACAATCAAAAGTGAGCAGGATTTAACCTAGAACAAATTTAGAAGACTTGCTTTATGAACTCACTAGTTGACTTATATCTTTTGCGCTTAAAACAAATGCACTTCTTATGCTATATCAACTAAGACGTGGTTCACCATTTCCAAATTAAAAGTTTGGCACTTTAAAACTTAAGTTAACATCTTTTTTTTTTACTCGTTAAGATATAAAAAGATTAAACGAGAAAAAATATAACTTTGAATAAAAAACACAAAACACTCTATCATGATAGCAAAAATAGACAATCAAACATATTGATCTCCCATTCTTAATTCTAATCCTTGATAAAGCATTATTCTAATTAAATGACCTACCATAATATTAACTGTTAAACGCACAGTCAAGGCCAAAGGACGTGAAAATTCCCTAACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGAAAATTTCTCCCTAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATAATAAACCTAAGGACTCTTG</pcr_primer_p1>
		<pcr_primer_p2>GTGAGTTCATAAAGCAAGTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAAAATTCTTCATCACACAATAATATTGTTTGTAAGTAATCTTAAAACTGTTAAAAAAATAGTAAACAGAGAAATAAAAACAATCAAAAGTGAGCAGGATTTAACCTAGAACAAATTTAGAAGACTTGCTTTATGAACTCAC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAAAATTCTTCATCACACAATAATATTGTTTGTAAGTAATCTTAAAACTGTTAAAAAAATAGTAAACARAGAAATAAAAACAATCAAAAGTGAGCAGGATTTAACCTAGAACAAATTTAGAAGACTTGCTTTATGAACTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36324</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>1516</contig_pos>
        <strand></strand>
        <context>GAATAAAAAA[C/T]ACAAAYCACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAGATATAAAAAGATTAAACGAGAAAAAATATAACTTTGAATAAAAAA</left_flank>
        <right_flank>ACAAAACACTCTATCATGATAGCAAAAATAGACAATCAAACATATTGATC</right_flank>
        <qual_score>46</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAAAATTCTTCATCACACAATAATATTGTTTGTAAGTAATCTTAAAACTGTTAAAAAAATAGTAAACAGAGAAATAAAAACAATCAAAAGTGAGCAGGATTTAACCTAGAACAAATTTAGAAGACTTGCTTTATGAACTCACTAGTTGACTTATATCTTTTGCGCTTAAAACAAATGCACTTCTTATGCTATATCAACTAAGACGTGGTTCACCATTTCCAAATTAAAAGTTTGGCACTTTAAAACTTAAGTTAACATCTTTTTTTTTTACTCGTTAAGATATAAAAAGATTAAACGAGAAAAAATATAACTTTGAATAAAAAACACAAAACACTCTATCATGATAGCAAAAATAGACAATCAAACATATTGATCTCCCATTCTTAATTCTAATCCTTGATAAAGCATTATTCTAATTAAATGACCTACCATAATATTAACTGTTAAACGCACAGTCAAGGCCAAAGGACGTGAAAATTCCCTAACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAAC</canonical>
            <polymorphic>AAAAATGAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAAAATTCTTCATCACACAATAATATTGTTTGTAAGTAATCTTAAAACTGTTAAAAAAATAGTAAACAGAGAAATAAAAACAATCAAAAGTGAGCAGGATTTAACCTAGAACAAATTTAGAAGACTTGCTTTATGAACTCACTAGTTGACTTATATCTTTTGCGCTTAAAACAAATGCACTTCTTATGCTATATCAACTAAGACGTGGTTCACCATTTCCAAATTAAAAGTTTGGCACTTTAAAACTTAAGTTAACATCTTTTTTTTTTACTCGTTAAGATATAAAAAGATTAAACGAGAAAAAATATAACTTTGAATAAAAAAYACAAAACACTCTATCATGATAGCAAAAATAGACAATCAAACATATTGATCTCCCATTCTTAATTCTAATCCTTGATAAAGCATTATTCTAATTAAATGACCTACCATAATATTAACTGTTAAACGCACAGTCAAGGCCAAAGGACGTGAAAATTCCCTAACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>119 105 103 89 77 75 73 56 49 39 38 30 28 28 25 21 15 11 7 5 3 2 2</canonical_bands>
                <polymorphic_bands>119 105 103 96 77 75 73 56 49 39 38 30 28 28 25 21 15 11 5 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGACTTATATCTTTTGCGCTTA</pcr_primer_p1>
		<pcr_primer_p2>TTAGAATTAAGAATGGGAGATCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTGACTTATATCTTTTGCGCTTAAAACAAATGCACTTCTTATGCTATATCAACTAAGACGTGGTTCACCATTTCCAAATTAAAAGTTTGGCACTTTAAAACTTAAGTTAACATCTTTTTTTTTTACTCGTTAAGATATAAAAAGATTAAACGAGAAAAAATATAACTTTGAATAAAAAACACAAAACACTCTATCATGATAGCAAAAATAGACAATCAAACATATTGATCTCCCATTCTTAATTCTAA</canonical_amplicon>
		<polymorphic_amplicon>TTGACTTATATCTTTTGCGCTTAAAACAAATGCACTTCTTATGCTATATCAACTAAGACGTGGTTCACCATTTCCAAATTAAAAGTTTGGCACTTTAAAACTTAAGTTAACATCTTTTTTTTTTACTCGTTAAGATATAAAAAGATTAAACGAGAAAAAATATAACTTTGAATAAAAAAYACAAAACACTCTATCATGATAGCAAAAATAGACAATCAAACATATTGATCTCCCATTCTTAATTCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36325</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>1522</contig_pos>
        <strand>+</strand>
        <context>AAAAYACAAA[C/T]CACTCTATCA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATAAAAAGATTAAACGAGAAAAAATATAACTTTGAATAAAAAACACAAA</left_flank>
        <right_flank>CACTCTATCATGATAGCAAAAATAGACAATCAAACATATTGATCTCCCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAAAATTCTTCATCACACAATAATATTGTTTGTAAGTAATCTTAAAACTGTTAAAAAAATAGTAAACAGAGAAATAAAAACAATCAAAAGTGAGCAGGATTTAACCTAGAACAAATTTAGAAGACTTGCTTTATGAACTCACTAGTTGACTTATATCTTTTGCGCTTAAAACAAATGCACTTCTTATGCTATATCAACTAAGACGTGGTTCACCATTTCCAAATTAAAAGTTTGGCACTTTAAAACTTAAGTTAACATCTTTTTTTTTTACTCGTTAAGATATAAAAAGATTAAACGAGAAAAAATATAACTTTGAATAAAAAACACAAAACACTCTATCATGATAGCAAAAATAGACAATCAAACATATTGATCTCCCATTCTTAATTCTAATCCTTGATAAAGCATTATTCTAATTAAATGACCTACCATAATATTAACTGTTAAACGCACAGTCAAGGCCAAAGGACGTGAAAATTCCCTAACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAAC</canonical>
            <polymorphic>GAAGAGGTGCCACACCAATTTTTAATAAAATAATAAAAAATTGTAATAGACCACTTCTAAACAACAAAAATAATAAACCTAAGGACTCTTGAATAACAAAATAATTAAAAATTCTAGTATAACTTTTTCTACTTTTGTTTAATAAAACAAAAACCACCGTCATTAACAAAAAAATTCTTCATCACACAATAATATTGTTTGTAAGTAATCTTAAAACTGTTAAAAAAATAGTAAACAGAGAAATAAAAACAATCAAAAGTGAGCAGGATTTAACCTAGAACAAATTTAGAAGACTTGCTTTATGAACTCACTAGTTGACTTATATCTTTTGCGCTTAAAACAAATGCACTTCTTATGCTATATCAACTAAGACGTGGTTCACCATTTCCAAATTAAAAGTTTGGCACTTTAAAACTTAAGTTAACATCTTTTTTTTTTACTCGTTAAGATATAAAAAGATTAAACGAGAAAAAATATAACTTTGAATAAAAAACACAAAYCACTCTATCATGATAGCAAAAATAGACAATCAAACATATTGATCTCCCATTCTTAATTCTAATCCTTGATAAAGCATTATTCTAATTAAATGACCTACCATAATATTAACTGTTAAACGCACAGTCAAGGCCAAAGGACGTGAAAATTCCCTAACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGACTTATATCTTTTGCGCTTA</pcr_primer_p1>
		<pcr_primer_p2>TTAGAATTAAGAATGGGAGATCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTGACTTATATCTTTTGCGCTTAAAACAAATGCACTTCTTATGCTATATCAACTAAGACGTGGTTCACCATTTCCAAATTAAAAGTTTGGCACTTTAAAACTTAAGTTAACATCTTTTTTTTTTACTCGTTAAGATATAAAAAGATTAAACGAGAAAAAATATAACTTTGAATAAAAAACACAAAACACTCTATCATGATAGCAAAAATAGACAATCAAACATATTGATCTCCCATTCTTAATTCTAA</canonical_amplicon>
		<polymorphic_amplicon>TTGACTTATATCTTTTGCGCTTAAAACAAATGCACTTCTTATGCTATATCAACTAAGACGTGGTTCACCATTTCCAAATTAAAAGTTTGGCACTTTAAAACTTAAGTTAACATCTTTTTTTTTTACTCGTTAAGATATAAAAAGATTAAACGAGAAAAAATATAACTTTGAATAAAAAACACAAAYCACTCTATCATGATAGCAAAAATAGACAATCAAACATATTGATCTCCCATTCTTAATTCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36326</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>2008</contig_pos>
        <strand></strand>
        <context>aaaacaaaaa[C/T]tgtaaaacaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAA</left_flank>
        <right_flank>TGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAAT</right_flank>
        <qual_score>47</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAAAACACAAAACACTCTATCATGATAGCAAAAATAGACAATCAAACATATTGATCTCCCATTCTTAATTCTAATCCTTGATAAAGCATTATTCTAATTAAATGACCTACCATAATATTAACTGTTAAACGCACAGTCAAGGCCAAAGGACGTGAAAATTCCCTAACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATAC</canonical>
            <polymorphic>TAAAAAACACAAAACACTCTATCATGATAGCAAAAATAGACAATCAAACATATTGATCTCCCATTCTTAATTCTAATCCTTGATAAAGCATTATTCTAATTAAATGACCTACCATAATATTAACTGTTAAACGCACAGTCAAGGCCAAAGGACGTGAAAATTCCCTAACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAAYTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>499 305 125 59 12</canonical_bands>
                <polymorphic_bands>558 305 125 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTAAAAACACCTACAAGACTGTT</pcr_primer_p1>
		<pcr_primer_p2>ATCCGTAGTTCTTATCCTCGTTA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAAYTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36327</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>2110</contig_pos>
        <strand></strand>
        <context>actggtaata[A/G]yttaaaycag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATA</left_flank>
        <right_flank>CTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAG</right_flank>
        <qual_score>47</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGACCTACCATAATATTAACTGTTAAACGCACAGTCAAGGCCAAAGGACGTGAAAATTCCCTAACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAA</canonical>
            <polymorphic>AATGACCTACCATAATATTAACTGTTAAACGCACAGTCAAGGCCAAAGGACGTGAAAATTCCCTAACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATARCTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTAAAAACACCTACAAGACTGTT</pcr_primer_p1>
		<pcr_primer_p2>ATCCGTAGTTCTTATCCTCGTTA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATARCTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36328</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>2111</contig_pos>
        <strand></strand>
        <context>ctggtaatar[C/T]ttaaaycaga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAA</left_flank>
        <right_flank>TTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGA</right_flank>
        <qual_score>46</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGACCTACCATAATATTAACTGTTAAACGCACAGTCAAGGCCAAAGGACGTGAAAATTCCCTAACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAA</canonical>
            <polymorphic>ATGACCTACCATAATATTAACTGTTAAACGCACAGTCAAGGCCAAAGGACGTGAAAATTCCCTAACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAAYTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTAAAAACACCTACAAGACTGTT</pcr_primer_p1>
		<pcr_primer_p2>ATCCGTAGTTCTTATCCTCGTTA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAAYTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36329</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>2117</contig_pos>
        <strand></strand>
        <context>ataryttaaa[C/T]cagaayaaTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAA</left_flank>
        <right_flank>CAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACG</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACCATAATATTAACTGTTAAACGCACAGTCAAGGCCAAAGGACGTGAAAATTCCCTAACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAA</canonical>
            <polymorphic>TACCATAATATTAACTGTTAAACGCACAGTCAAGGCCAAAGGACGTGAAAATTCCCTAACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAAYCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTAAAAACACCTACAAGACTGTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTAGTGTTCTGTCATCAGCTA</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>ATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAAYCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36330</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>2123</contig_pos>
        <strand></strand>
        <context>taaaycagaa[T/C]aaTCTCATCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAA</left_flank>
        <right_flank>AATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATTAACTGTTAAACGCACAGTCAAGGCCAAAGGACGTGAAAATTCCCTAACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGA</canonical>
            <polymorphic>AATATTAACTGTTAAACGCACAGTCAAGGCCAAAGGACGTGAAAATTCCCTAACAATTTCAACTAGTAATATTCTAAGAGTTTTTAAATAAGTATCACCAGGTTTACTTATATAAACTGAAAATTTCTCCCTAGAAATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAAYAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTAAAAACACCTACAAGACTGTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTAGTGTTCTGTCATCAGCTA</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>ATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAAYAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36331</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>2258</contig_pos>
        <strand>+</strand>
        <context>AAAAAATTAA[C/T]CTTCCATACT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAA</left_flank>
        <right_flank>CTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAA</canonical>
            <polymorphic>AATAAAGGTTAATAAAGTACTTAATCATGCAACGGCAGCATAAACAAAAGTAAATTCGACTATTCCACAAGGACAAAAAGAATAAGTAAAATAACCACCAAAACAACACGTTAATAAAATAATAAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAYCTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATCATCAGATCATAACGATAAC</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTGATTTTTCTGAAGGT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>TCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>TCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAYCTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36332</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>2381</contig_pos>
        <strand></strand>
        <context>ACTCGGCaat[A/G]attataatta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAAT</left_flank>
        <right_flank>ATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTG</canonical>
            <polymorphic>AAAAGTAAATACAGAAATTACAGAACTAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATRATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>154 132 131 129 105 84 78 61 52 21 18 15 14 6</canonical_bands>
                <polymorphic_bands>154 135 132 131 105 84 78 61 52 21 18 15 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACCACTAACTAGCTCACTCTCA</pcr_primer_p1>
		<pcr_primer_p2>CTAAATATGGTATGATTGGTGCT</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>AACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAG</canonical_amplicon>
		<polymorphic_amplicon>AACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATRATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36333</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>2407</contig_pos>
        <strand></strand>
        <context>gggatataaa[C/T]aattagtaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAA</left_flank>
        <right_flank>AATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTAT</right_flank>
        <qual_score>46</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAA</canonical>
            <polymorphic>TAAGGGGTAAAGTATTTCTATATCTAAAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAAYAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCACTAACTAGCTCACTCTCA</pcr_primer_p1>
		<pcr_primer_p2>CTAAATATGGTATGATTGGTGCT</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>AACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAG</canonical_amplicon>
		<polymorphic_amplicon>AACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAAYAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36334</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>2433</contig_pos>
        <strand></strand>
        <context>attaaactta[C/T]atataaaatt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTA</left_flank>
        <right_flank>ATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAA</right_flank>
        <qual_score>49</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAACTATAATTAGAACTAGAATAATCAAG</canonical>
            <polymorphic>AAAACACCTACAAGACTGTTTAAAAATTTTTTAACTAGAGTATTTAACATACCTTCTTTAAAATAAAACAAAAACTGTAAAACAAAAACAAATATAAAAATATCTAAAAAATAAACTTGATTAATAATAAAAAACAACTGCATAAAAACAAAGTATAATTAGAGAAACTGGTAATAACTTAAACCAGAATAATCTCATCATCAGATCATAACGATAACGAGGATAAGAACTACGGATAAAAATTAAAATAGAAAAAATAGAAAAAGATGCTAAAATAGAAAAACTGAAAAATATAGCTGATGACAGAACACTAAAAAAAATTAAACTTCCATACTCCCTTAAAAATAATAAAACAAAAGCAACACTGGCGAACTCAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTAYATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAACTATAATTAGAACTAGAATAATCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCACTAACTAGCTCACTCTCA</pcr_primer_p1>
		<pcr_primer_p2>CTAAATATGGTATGATTGGTGCT</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>AACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAG</canonical_amplicon>
		<polymorphic_amplicon>AACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTAYATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36335</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>2807</contig_pos>
        <strand>+</strand>
        <context>TAAAAGTAAC[C/T]TTCGTAGGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAAC</left_flank>
        <right_flank>TTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAACTATAATTAGAACTAGAATAATCAAGAGTAAAATATCTTTAGATTTACAATCTAACGTTTTTAAATTAAACTAAACTCTTAAATTAAGAGGTATACCTTTTGATTAACAGTCAACAATTCTTTAATTAAACTAACTCTTAAAAACTACGAGTTACCTCAAAACATGTTTTCAAAACATATTTATATATAGTTTTATTACTAGATTCAGGTTCCCCTAAATCTACTTTACTACAACTTACTCCCCTTTGGGCAATTGATGGATGATTTGTACCACCTCTAAGTAATCTTCAAAAACACATAAAAAGTTTTTTACTGTCTTTTACAATTTCATTTAAACAACTACATTTAAAATCCAGGTTATAGAACATTGTAGGCCAAATGTTTCTTAAAATATAGACCG</canonical>
            <polymorphic>CAACATTATAACCACTAACTAGCTCACTCTCACCTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACYTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAACTATAATTAGAACTAGAATAATCAAGAGTAAAATATCTTTAGATTTACAATCTAACGTTTTTAAATTAAACTAAACTCTTAAATTAAGAGGTATACCTTTTGATTAACAGTCAACAATTCTTTAATTAAACTAACTCTTAAAAACTACGAGTTACCTCAAAACATGTTTTCAAAACATATTTATATATAGTTTTATTACTAGATTCAGGTTCCCCTAAATCTACTTTACTACAACTTACTCCCCTTTGGGCAATTGATGGATGATTTGTACCACCTCTAAGTAATCTTCAAAAACACATAAAAAGTTTTTTACTGTCTTTTACAATTTCATTTAAACAACTACATTTAAAATCCAGGTTATAGAACATTGTAGGCCAAATGTTTCTTAAAATATAGACCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGTAAAGTAAATCATTCCAAAT</pcr_primer_p1>
		<pcr_primer_p2>AATGATTTTTATTGTTCAGAGTATTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATT</canonical_amplicon>
		<polymorphic_amplicon>AAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACYTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36336</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>2840</contig_pos>
        <strand>+</strand>
        <context>GACTCCTACC[C/T]AAYAAATGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACC</left_flank>
        <right_flank>AACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAA</right_flank>
        <qual_score>149</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAACTATAATTAGAACTAGAATAATCAAGAGTAAAATATCTTTAGATTTACAATCTAACGTTTTTAAATTAAACTAAACTCTTAAATTAAGAGGTATACCTTTTGATTAACAGTCAACAATTCTTTAATTAAACTAACTCTTAAAAACTACGAGTTACCTCAAAACATGTTTTCAAAACATATTTATATATAGTTTTATTACTAGATTCAGGTTCCCCTAAATCTACTTTACTACAACTTACTCCCCTTTGGGCAATTGATGGATGATTTGTACCACCTCTAAGTAATCTTCAAAAACACATAAAAAGTTTTTTACTGTCTTTTACAATTTCATTTAAACAACTACATTTAAAATCCAGGTTATAGAACATTGTAGGCCAAATGTTTCTTAAAATATAGACCGGGTATATATCTATTTTAATAAATTAAAAATTTT</canonical>
            <polymorphic>CTTCAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCYAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAACTATAATTAGAACTAGAATAATCAAGAGTAAAATATCTTTAGATTTACAATCTAACGTTTTTAAATTAAACTAAACTCTTAAATTAAGAGGTATACCTTTTGATTAACAGTCAACAATTCTTTAATTAAACTAACTCTTAAAAACTACGAGTTACCTCAAAACATGTTTTCAAAACATATTTATATATAGTTTTATTACTAGATTCAGGTTCCCCTAAATCTACTTTACTACAACTTACTCCCCTTTGGGCAATTGATGGATGATTTGTACCACCTCTAAGTAATCTTCAAAAACACATAAAAAGTTTTTTACTGTCTTTTACAATTTCATTTAAACAACTACATTTAAAATCCAGGTTATAGAACATTGTAGGCCAAATGTTTCTTAAAATATAGACCGGGTATATATCTATTTTAATAAATTAAAAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGCTAGACCCATAAAAGTAA</pcr_primer_p1>
		<pcr_primer_p2>TGTTGACTGTTAATCAAAAGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAACTATAATTAGAACTAGAATAATCAAGAGTAAAATATCTTTAGATTTACAATCTAACGTTTTTAAATTAAACTAAACTCTTAAATTAAGAGGTATACCTTTTGATTAACAGTCAACA</canonical_amplicon>
		<polymorphic_amplicon>TTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCYAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAACTATAATTAGAACTAGAATAATCAAGAGTAAAATATCTTTAGATTTACAATCTAACGTTTTTAAATTAAACTAAACTCTTAAATTAAGAGGTATACCTTTTGATTAACAGTCAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36337</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>2843</contig_pos>
        <strand>+</strand>
        <context>TCCTACCYAA[C/T]AAATGACGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAA</left_flank>
        <right_flank>AAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAAT</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAACTATAATTAGAACTAGAATAATCAAGAGTAAAATATCTTTAGATTTACAATCTAACGTTTTTAAATTAAACTAAACTCTTAAATTAAGAGGTATACCTTTTGATTAACAGTCAACAATTCTTTAATTAAACTAACTCTTAAAAACTACGAGTTACCTCAAAACATGTTTTCAAAACATATTTATATATAGTTTTATTACTAGATTCAGGTTCCCCTAAATCTACTTTACTACAACTTACTCCCCTTTGGGCAATTGATGGATGATTTGTACCACCTCTAAGTAATCTTCAAAAACACATAAAAAGTTTTTTACTGTCTTTTACAATTTCATTTAAACAACTACATTTAAAATCCAGGTTATAGAACATTGTAGGCCAAATGTTTCTTAAAATATAGACCGGGTATATATCTATTTTAATAAATTAAAAATTTTTTA</canonical>
            <polymorphic>CAGAAAAATCAAAAGGTGCACGATTTAACTCGGCAATAATTATAATTAAAAATGGGATATAAACAATTAGTAAACTTAAATTAAACTTACATATAAAATTAAAAACATTATTATGAATAATAATACACAAAACATATAAAGAAAAAGCAATTTCATAAGAAATACTTTGTCTTCTAGCACGAATAGCACCAATCATACCATATTTAGATTTACTGACAATACCTCTAACCAAGGTGGTATAAACAGAAAAACCAATTAAACAAAGAAAAAACAAAACTGAATACTCAAAACTAATAAAATCAAAAAAATAAGGTAAAGTAAATCATTCCAAATATATCACAATAAAGGAAATACCCGGTACCAACAGAAAAGAAACCTCAGACGAATTCAAAGGTGTTATCTGCTCCTTTTTTAAAAGTTTTACACCATCCAACAAAGCTTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAAYAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAACTATAATTAGAACTAGAATAATCAAGAGTAAAATATCTTTAGATTTACAATCTAACGTTTTTAAATTAAACTAAACTCTTAAATTAAGAGGTATACCTTTTGATTAACAGTCAACAATTCTTTAATTAAACTAACTCTTAAAAACTACGAGTTACCTCAAAACATGTTTTCAAAACATATTTATATATAGTTTTATTACTAGATTCAGGTTCCCCTAAATCTACTTTACTACAACTTACTCCCCTTTGGGCAATTGATGGATGATTTGTACCACCTCTAAGTAATCTTCAAAAACACATAAAAAGTTTTTTACTGTCTTTTACAATTTCATTTAAACAACTACATTTAAAATCCAGGTTATAGAACATTGTAGGCCAAATGTTTCTTAAAATATAGACCGGGTATATATCTATTTTAATAAATTAAAAATTTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGCTAGACCCATAAAAGTAA</pcr_primer_p1>
		<pcr_primer_p2>TGTTGACTGTTAATCAAAAGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAACAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAACTATAATTAGAACTAGAATAATCAAGAGTAAAATATCTTTAGATTTACAATCTAACGTTTTTAAATTAAACTAAACTCTTAAATTAAGAGGTATACCTTTTGATTAACAGTCAACA</canonical_amplicon>
		<polymorphic_amplicon>TTGAGCTAGACCCATAAAAGTAACTTTCGTAGGACCTAGACGATTTTGACTCCTACCTAAYAAATGACGTTCATATAAAGTAATAAAAGCAATACTCTGAACAATAAAAATCATTATTAAAATAACTATAATTAGAACTAGAATAATCAAGAGTAAAATATCTTTAGATTTACAATCTAACGTTTTTAAATTAAACTAAACTCTTAAATTAAGAGGTATACCTTTTGATTAACAGTCAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36338</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>3559</contig_pos>
        <strand>+</strand>
        <context>ATGAAAAATA[A/T]YCAATATAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCAGGTACTAATCTGCTTCGTTCAACAAATTTTAAAATTATGAAAAATA</left_flank>
        <right_flank>CCAATATAGATCCAAATTCTACCGTGAACCTAAAAGAAACTTATAAAATT</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACCTCAAAACATGTTTTCAAAACATATTTATATATAGTTTTATTACTAGATTCAGGTTCCCCTAAATCTACTTTACTACAACTTACTCCCCTTTGGGCAATTGATGGATGATTTGTACCACCTCTAAGTAATCTTCAAAAACACATAAAAAGTTTTTTACTGTCTTTTACAATTTCATTTAAACAACTACATTTAAAATCCAGGTTATAGAACATTGTAGGCCAAATGTTTCTTAAAATATAGACCGGGTATATATCTATTTTAATAAATTAAAAATTTTTTATTATAATCCTTAAGAATAAAATAAACGATCATACACGAGCCAAAAAATTAAGTAGTTAATGAGGGCTCTCAATTACTACTCAGCCTCCAAAGATAGTTTAGAATGTCTGCCAATATCTTTTCAGTTTAAATACAACTTTACTCCTGCTCTTTTAATTTTTGTCTAACCAGGTACTAATCTGCTTCGTTCAACAAATTTTAAAATTATGAAAAATAACCAATATAGATCCAAATTCTACCGTGAACCTAAAAGAAACTTATAAAATTTCATAATTAACATCAATTAAAGTACAAGCTTTAACAAGTCTAGCCGATTATTCTGGAACAAGTATTTTACAAGCGATTAATTGCCGAGGTAAATTTTTATTGCCTACTCCGTAAATCAAATTTAGATAATACCATTTTAAATCATCTTAAACCATGATCAAATTTTAATTCCCTAAAAGAAAACTTTATAAGATAAAAAACCATTTCTGCGAAAAAGAAACATACTTTTTATACTATTATCTCTACAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATT</canonical>
            <polymorphic>TACCTCAAAACATGTTTTCAAAACATATTTATATATAGTTTTATTACTAGATTCAGGTTCCCCTAAATCTACTTTACTACAACTTACTCCCCTTTGGGCAATTGATGGATGATTTGTACCACCTCTAAGTAATCTTCAAAAACACATAAAAAGTTTTTTACTGTCTTTTACAATTTCATTTAAACAACTACATTTAAAATCCAGGTTATAGAACATTGTAGGCCAAATGTTTCTTAAAATATAGACCGGGTATATATCTATTTTAATAAATTAAAAATTTTTTATTATAATCCTTAAGAATAAAATAAACGATCATACACGAGCCAAAAAATTAAGTAGTTAATGAGGGCTCTCAATTACTACTCAGCCTCCAAAGATAGTTTAGAATGTCTGCCAATATCTTTTCAGTTTAAATACAACTTTACTCCTGCTCTTTTAATTTTTGTCTAACCAGGTACTAATCTGCTTCGTTCAACAAATTTTAAAATTATGAAAAATAWCCAATATAGATCCAAATTCTACCGTGAACCTAAAAGAAACTTATAAAATTTCATAATTAACATCAATTAAAGTACAAGCTTTAACAAGTCTAGCCGATTATTCTGGAACAAGTATTTTACAAGCGATTAATTGCCGAGGTAAATTTTTATTGCCTACTCCGTAAATCAAATTTAGATAATACCATTTTAAATCATCTTAAACCATGATCAAATTTTAATTCCCTAAAAGAAAACTTTATAAGATAAAAAACCATTTCTGCGAAAAAGAAACATACTTTTTATACTATTATCTCTACAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTACTACTCAGCCTCCAAAGAT</pcr_primer_p1>
		<pcr_primer_p2>CAGAATAATCGGCTAGACTTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTACTACTCAGCCTCCAAAGATAGTTTAGAATGTCTGCCAATATCTTTTCAGTTTAAATACAACTTTACTCCTGCTCTTTTAATTTTTGTCTAACCAGGTACTAATCTGCTTCGTTCAACAAATTTTAAAATTATGAAAAATAACCAATATAGATCCAAATTCTACCGTGAACCTAAAAGAAACTTATAAAATTTCATAATTAACATCAATTAAAGTACAAGCTTTAACAAGTCTAGCCGATTATTCTG</canonical_amplicon>
		<polymorphic_amplicon>ATTACTACTCAGCCTCCAAAGATAGTTTAGAATGTCTGCCAATATCTTTTCAGTTTAAATACAACTTTACTCCTGCTCTTTTAATTTTTGTCTAACCAGGTACTAATCTGCTTCGTTCAACAAATTTTAAAATTATGAAAAATAWCCAATATAGATCCAAATTCTACCGTGAACCTAAAAGAAACTTATAAAATTTCATAATTAACATCAATTAAAGTACAAGCTTTAACAAGTCTAGCCGATTATTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36339</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>3989</contig_pos>
        <strand>+</strand>
        <context>GAAATAACTG[C/T]AAAACACata</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTG</left_flank>
        <right_flank>AAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTTTTAATTTTTGTCTAACCAGGTACTAATCTGCTTCGTTCAACAAATTTTAAAATTATGAAAAATAACCAATATAGATCCAAATTCTACCGTGAACCTAAAAGAAACTTATAAAATTTCATAATTAACATCAATTAAAGTACAAGCTTTAACAAGTCTAGCCGATTATTCTGGAACAAGTATTTTACAAGCGATTAATTGCCGAGGTAAATTTTTATTGCCTACTCCGTAAATCAAATTTAGATAATACCATTTTAAATCATCTTAAACCATGATCAAATTTTAATTCCCTAAAAGAAAACTTTATAAGATAAAAAACCATTTCTGCGAAAAAGAAACATACTTTTTATACTATTATCTCTACAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAA</canonical>
            <polymorphic>CTCTTTTAATTTTTGTCTAACCAGGTACTAATCTGCTTCGTTCAACAAATTTTAAAATTATGAAAAATAACCAATATAGATCCAAATTCTACCGTGAACCTAAAAGAAACTTATAAAATTTCATAATTAACATCAATTAAAGTACAAGCTTTAACAAGTCTAGCCGATTATTCTGGAACAAGTATTTTACAAGCGATTAATTGCCGAGGTAAATTTTTATTGCCTACTCCGTAAATCAAATTTAGATAATACCATTTTAAATCATCTTAAACCATGATCAAATTTTAATTCCCTAAAAGAAAACTTTATAAGATAAAAAACCATTTCTGCGAAAAAGAAACATACTTTTTATACTATTATCTCTACAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGYAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAAATAGATTTTTGATTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>TTAAGTGACAGCGTTTAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAA</canonical_amplicon>
		<polymorphic_amplicon>CAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGYAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36340</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>4278</contig_pos>
        <strand>+</strand>
        <context>RCCYARATAA[A/G]TAGTATATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAA</left_flank>
        <right_flank>TAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCCTAAAAGAAAACTTTATAAGATAAAAAACCATTTCTGCGAAAAAGAAACATACTTTTTATACTATTATCTCTACAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATAT</canonical>
            <polymorphic>TCCCTAAAAGAAAACTTTATAAGATAAAAAACCATTTCTGCGAAAAAGAAACATACTTTTTATACTATTATCTCTACAGAAATAGATTTTTGATTTTGAAGATCAATAGTTTAAACTTAACTTACATCTGTTAAAAAATACAATTATCACTACCAAAAAATTTTATATTCCCCACTATAACGACTATACCTAAAATTCTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAARTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>141 129 111 84 64 63 54 42 39 37 36 35 31 27 23 21 20 17 12 8 6</canonical_bands>
                <polymorphic_bands>141 129 121 111 64 63 54 42 39 36 35 31 27 23 21 20 17 12 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACGTAAAGCACCTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGGAATTTTCGTTATTTTAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTC</canonical_amplicon>
		<polymorphic_amplicon>TTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAARTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36341</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>4475</contig_pos>
        <strand>+</strand>
        <context>TTGGTATTCT[C/T]AATAAAAGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCT</left_flank>
        <right_flank>AATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATG</canonical>
            <polymorphic>CTTGAAATAACTGAAAAACACATAAAATAAAAAAATATTATTTCCCTTAGCAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTYAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAACAAATAAAATAAGAAAACCAG</pcr_primer_p1>
		<pcr_primer_p2>TTACAACTCTATTTGGGTGTACG</pcr_primer_p2>
		<pcr_amplicon_size>833</pcr_amplicon_size>
		<canonical_amplicon>CAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAA</canonical_amplicon>
		<polymorphic_amplicon>CAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTYAATAAAAGTGAAAAAATCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36342</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>4525</contig_pos>
        <strand>+</strand>
        <context>GGATCRATRT[A/G]TATATAACTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATAT</left_flank>
        <right_flank>TATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATATAATT</canonical>
            <polymorphic>CAAATAAGAAAATTTTAAAAATAAACTTAGCATTAAAAATTCTAAAGAGATTAAAATAAAAATTAAACGCTGTCACTTAAAAATAAACATAAATAATCTTACAAATAAAAACATAATTTTTACACTTTACGTAAAGCACCTGAAAAATTTAAAAAATAGCTTCTAAAATTTATAAAAAATAATAAACAAATCAAAATAAAACTGAAAATAAATCAGTAAATACTATAATAAAAACCACTTAAGCCCAGATAATTAGTATATTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATRTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATATAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAACAAATAAAATAAGAAAACCAG</pcr_primer_p1>
		<pcr_primer_p2>TTACAACTCTATTTGGGTGTACG</pcr_primer_p2>
		<pcr_amplicon_size>833</pcr_amplicon_size>
		<canonical_amplicon>CAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTA</canonical_amplicon>
		<polymorphic_amplicon>CAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATRTATATAACTAATAATACTACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36343</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>4785</contig_pos>
        <strand></strand>
        <context>atatttataa[T/C]ataaatatga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAA</left_flank>
        <right_flank>ATAAATATGATATACATAATATATATATATATATATCATATTTATAAAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAATCTTGTGTATGCAAAACACATATTTTTACTAAACT</canonical>
            <polymorphic>TTCCATAGAAACAGGAGAAAAATAAATAATTCTAATTAATAACAAAAACAATGATATATAACTTTTCACAACATTAATTTTAGACAAACTAGAAAAATAAACTAAAATAACGAAAATTCCTCTCAAAAACAACAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAAYATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAATCTTGTGTATGCAAAACACATATTTTTACTAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAACAAATAAAATAAGAAAACCAG</pcr_primer_p1>
		<pcr_primer_p2>TTACAACTCTATTTGGGTGTACG</pcr_primer_p2>
		<pcr_amplicon_size>833</pcr_amplicon_size>
		<canonical_amplicon>CAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAA</canonical_amplicon>
		<polymorphic_amplicon>CAAACAAATAAAATAAGAAAACCAGATGTGTATTCTTATAGAAATAATTGGTATTCTAAATAAAAGTGAAAAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAAYATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36344</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>4987</contig_pos>
        <strand></strand>
        <context>tataattata[C/A]tgtatatcat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATA</left_flank>
        <right_flank>TGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAATCTTGTGTATGCAAAACACATATTTTTACTAAACTAAAACCCCATTTAACAAATTATAAAAAAAATAAAAATTAAAATTACAACACTGCTGAAATTTAACCTTTTTATATAGTAATTTTTAAAAATTCCAACTCTTAAAAATAAGGTATACCCCTTAGAATTGATATTATTTAAGAACAAATCTATAAATTTTAAATTTTTTATTTTATAGATCCTATTTTTAGCTAAATAATCTAC</canonical>
            <polymorphic>AAAATCAAAAAAAATCTCCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATAMTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAATCTTGTGTATGCAAAACACATATTTTTACTAAACTAAAACCCCATTTAACAAATTATAAAAAAAATAAAAATTAAAATTACAACACTGCTGAAATTTAACCTTTTTATATAGTAATTTTTAAAAATTCCAACTCTTAAAAATAAGGTATACCCCTTAGAATTGATATTATTTAAGAACAAATCTATAAATTTTAAATTTTTTATTTTATAGATCCTATTTTTAGCTAAATAATCTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAACAAATAAAATAAGAAAACCAG</pcr_primer_p1>
		<pcr_primer_p2>TTACAACTCTATTTGGGTGTACG</pcr_primer_p2>
		<pcr_amplicon_size>833</pcr_amplicon_size>
		<canonical_amplicon>ACTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAA</canonical_amplicon>
		<polymorphic_amplicon>AMTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36345</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>5004</contig_pos>
        <strand></strand>
        <context>tcatatttat[A/G]awataaatat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTAT</left_flank>
        <right_flank>ATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAAT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAATCTTGTGTATGCAAAACACATATTTTTACTAAACTAAAACCCCATTTAACAAATTATAAAAAAAATAAAAATTAAAATTACAACACTGCTGAAATTTAACCTTTTTATATAGTAATTTTTAAAAATTCCAACTCTTAAAAATAAGGTATACCCCTTAGAATTGATATTATTTAAGAACAAATCTATAAATTTTAAATTTTTTATTTTATAGATCCTATTTTTAGCTAAATAATCTACTAAAAACTTATAAGTTA</canonical>
            <polymorphic>CCTCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATRATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAATCTTGTGTATGCAAAACACATATTTTTACTAAACTAAAACCCCATTTAACAAATTATAAAAAAAATAAAAATTAAAATTACAACACTGCTGAAATTTAACCTTTTTATATAGTAATTTTTAAAAATTCCAACTCTTAAAAATAAGGTATACCCCTTAGAATTGATATTATTTAAGAACAAATCTATAAATTTTAAATTTTTTATTTTATAGATCCTATTTTTAGCTAAATAATCTACTAAAAACTTATAAGTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>277 191 131 130 48 43 42 42 24 24 23 18 7</canonical_bands>
                <polymorphic_bands>325 191 131 130 43 42 42 24 24 23 18 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAACAAATAAAATAAGAAAACCAG</pcr_primer_p1>
		<pcr_primer_p2>TTACAACTCTATTTGGGTGTACG</pcr_primer_p2>
		<pcr_amplicon_size>833</pcr_amplicon_size>
		<canonical_amplicon>TAATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAA</canonical_amplicon>
		<polymorphic_amplicon>TAATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36346</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>5006</contig_pos>
        <strand></strand>
        <context>atatttatra[T/A]ataaatatga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAA</left_flank>
        <right_flank>ATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAATCTTGTGTATGCAAAACACATATTTTTACTAAACTAAAACCCCATTTAACAAATTATAAAAAAAATAAAAATTAAAATTACAACACTGCTGAAATTTAACCTTTTTATATAGTAATTTTTAAAAATTCCAACTCTTAAAAATAAGGTATACCCCTTAGAATTGATATTATTTAAGAACAAATCTATAAATTTTAAATTTTTTATTTTATAGATCCTATTTTTAGCTAAATAATCTACTAAAAACTTATAAGTTAAT</canonical>
            <polymorphic>TCTTCATAGGATCGATATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAAWATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAATCTTGTGTATGCAAAACACATATTTTTACTAAACTAAAACCCCATTTAACAAATTATAAAAAAAATAAAAATTAAAATTACAACACTGCTGAAATTTAACCTTTTTATATAGTAATTTTTAAAAATTCCAACTCTTAAAAATAAGGTATACCCCTTAGAATTGATATTATTTAAGAACAAATCTATAAATTTTAAATTTTTTATTTTATAGATCCTATTTTTAGCTAAATAATCTACTAAAAACTTATAAGTTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAACAAATAAAATAAGAAAACCAG</pcr_primer_p1>
		<pcr_primer_p2>TTACAACTCTATTTGGGTGTACG</pcr_primer_p2>
		<pcr_amplicon_size>833</pcr_amplicon_size>
		<canonical_amplicon>ATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAA</canonical_amplicon>
		<polymorphic_amplicon>ATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36347</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>5021</contig_pos>
        <strand></strand>
        <context>atatgatata[T/C]wattataATG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATA</left_flank>
        <right_flank>AATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAATCTTGTGTATGCAAAACACATATTTTTACTAAACTAAAACCCCATTTAACAAATTATAAAAAAAATAAAAATTAAAATTACAACACTGCTGAAATTTAACCTTTTTATATAGTAATTTTTAAAAATTCCAACTCTTAAAAATAAGGTATACCCCTTAGAATTGATATTATTTAAGAACAAATCTATAAATTTTAAATTTTTTATTTTATAGATCCTATTTTTAGCTAAATAATCTACTAAAAACTTATAAGTTAATTCTTTAAATAACATT</canonical>
            <polymorphic>TATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATAYAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAATCTTGTGTATGCAAAACACATATTTTTACTAAACTAAAACCCCATTTAACAAATTATAAAAAAAATAAAAATTAAAATTACAACACTGCTGAAATTTAACCTTTTTATATAGTAATTTTTAAAAATTCCAACTCTTAAAAATAAGGTATACCCCTTAGAATTGATATTATTTAAGAACAAATCTATAAATTTTAAATTTTTTATTTTATAGATCCTATTTTTAGCTAAATAATCTACTAAAAACTTATAAGTTAATTCTTTAAATAACATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAACAAATAAAATAAGAAAACCAG</pcr_primer_p1>
		<pcr_primer_p2>TTACAACTCTATTTGGGTGTACG</pcr_primer_p2>
		<pcr_amplicon_size>833</pcr_amplicon_size>
		<canonical_amplicon>ATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAA</canonical_amplicon>
		<polymorphic_amplicon>AYAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36348</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>5022</contig_pos>
        <strand></strand>
        <context>tatgatatay[A/T]attataATGt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATAT</left_flank>
        <right_flank>ATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAATCTTGTGTATGCAAAACACATATTTTTACTAAACTAAAACCCCATTTAACAAATTATAAAAAAAATAAAAATTAAAATTACAACACTGCTGAAATTTAACCTTTTTATATAGTAATTTTTAAAAATTCCAACTCTTAAAAATAAGGTATACCCCTTAGAATTGATATTATTTAAGAACAAATCTATAAATTTTAAATTTTTTATTTTATAGATCCTATTTTTAGCTAAATAATCTACTAAAAACTTATAAGTTAATTCTTTAAATAACATTT</canonical>
            <polymorphic>ATTTATATAACTAATAATACTACTAAAAATAGCTAAAACAAAAAATAACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATATWATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAATCTTGTGTATGCAAAACACATATTTTTACTAAACTAAAACCCCATTTAACAAATTATAAAAAAAATAAAAATTAAAATTACAACACTGCTGAAATTTAACCTTTTTATATAGTAATTTTTAAAAATTCCAACTCTTAAAAATAAGGTATACCCCTTAGAATTGATATTATTTAAGAACAAATCTATAAATTTTAAATTTTTTATTTTATAGATCCTATTTTTAGCTAAATAATCTACTAAAAACTTATAAGTTAATTCTTTAAATAACATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>221 154 129 59 51 42 42 42 42 36 35 29 21 19 18 17 12 10 8 7 6</canonical_bands>
                <polymorphic_bands>221 154 129 84 59 51 42 42 36 35 29 21 19 18 17 12 10 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAACAAATAAAATAAGAAAACCAG</pcr_primer_p1>
		<pcr_primer_p2>TTACAACTCTATTTGGGTGTACG</pcr_primer_p2>
		<pcr_amplicon_size>833</pcr_amplicon_size>
		<canonical_amplicon>TAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAA</canonical_amplicon>
		<polymorphic_amplicon>TWATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36349</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>5068</contig_pos>
        <strand></strand>
        <context>atatataatt[A/G]tartgtatat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATT</left_flank>
        <right_flank>TAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTAT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAATCTTGTGTATGCAAAACACATATTTTTACTAAACTAAAACCCCATTTAACAAATTATAAAAAAAATAAAAATTAAAATTACAACACTGCTGAAATTTAACCTTTTTATATAGTAATTTTTAAAAATTCCAACTCTTAAAAATAAGGTATACCCCTTAGAATTGATATTATTTAAGAACAAATCTATAAATTTTAAATTTTTTATTTTATAGATCCTATTTTTAGCTAAATAATCTACTAAAAACTTATAAGTTAATTCTTTAAATAACATTTTTAATACTATAAATGATAAAAAGATTATTATAAATAAAAAAACTAA</canonical>
            <polymorphic>AACTTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTRTAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAATCTTGTGTATGCAAAACACATATTTTTACTAAACTAAAACCCCATTTAACAAATTATAAAAAAAATAAAAATTAAAATTACAACACTGCTGAAATTTAACCTTTTTATATAGTAATTTTTAAAAATTCCAACTCTTAAAAATAAGGTATACCCCTTAGAATTGATATTATTTAAGAACAAATCTATAAATTTTAAATTTTTTATTTTATAGATCCTATTTTTAGCTAAATAATCTACTAAAAACTTATAAGTTAATTCTTTAAATAACATTTTTAATACTATAAATGATAAAAAGATTATTATAAATAAAAAAACTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAACAAATAAAATAAGAAAACCAG</pcr_primer_p1>
		<pcr_primer_p2>TTACAACTCTATTTGGGTGTACG</pcr_primer_p2>
		<pcr_amplicon_size>833</pcr_amplicon_size>
		<canonical_amplicon>TATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAA</canonical_amplicon>
		<polymorphic_amplicon>TATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36350</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>5071</contig_pos>
        <strand></strand>
        <context>tataattrta[G/A]tgtatatcat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATA</left_flank>
        <right_flank>TGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATC</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAATCTTGTGTATGCAAAACACATATTTTTACTAAACTAAAACCCCATTTAACAAATTATAAAAAAAATAAAAATTAAAATTACAACACTGCTGAAATTTAACCTTTTTATATAGTAATTTTTAAAAATTCCAACTCTTAAAAATAAGGTATACCCCTTAGAATTGATATTATTTAAGAACAAATCTATAAATTTTAAATTTTTTATTTTATAGATCCTATTTTTAGCTAAATAATCTACTAAAAACTTATAAGTTAATTCTTTAAATAACATTTTTAATACTATAAATGATAAAAAGATTATTATAAATAAAAAAACTAAAGG</canonical>
            <polymorphic>TTAATTATAGAATTTTAAACCCTATCATTGTAAGTGATACATTCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATARTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAATCTTGTGTATGCAAAACACATATTTTTACTAAACTAAAACCCCATTTAACAAATTATAAAAAAAATAAAAATTAAAATTACAACACTGCTGAAATTTAACCTTTTTATATAGTAATTTTTAAAAATTCCAACTCTTAAAAATAAGGTATACCCCTTAGAATTGATATTATTTAAGAACAAATCTATAAATTTTAAATTTTTTATTTTATAGATCCTATTTTTAGCTAAATAATCTACTAAAAACTTATAAGTTAATTCTTTAAATAACATTTTTAATACTATAAATGATAAAAAGATTATTATAAATAAAAAAACTAAAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>305 236 161 112 67 42 36 24 11 6</canonical_bands>
                <polymorphic_bands>466 236 112 67 42 36 24 11 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAACAAATAAAATAAGAAAACCAG</pcr_primer_p1>
		<pcr_primer_p2>TTACAACTCTATTTGGGTGTACG</pcr_primer_p2>
		<pcr_amplicon_size>833</pcr_amplicon_size>
		<canonical_amplicon>AGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAA</canonical_amplicon>
		<polymorphic_amplicon>AGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36351</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>5113</contig_pos>
        <strand></strand>
        <context>tataattata[G/A]tgtatatcat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATA</left_flank>
        <right_flank>TGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAATCTTGTGTATGCAAAACACATATTTTTACTAAACTAAAACCCCATTTAACAAATTATAAAAAAAATAAAAATTAAAATTACAACACTGCTGAAATTTAACCTTTTTATATAGTAATTTTTAAAAATTCCAACTCTTAAAAATAAGGTATACCCCTTAGAATTGATATTATTTAAGAACAAATCTATAAATTTTAAATTTTTTATTTTATAGATCCTATTTTTAGCTAAATAATCTACTAAAAACTTATAAGTTAATTCTTTAAATAACATTTTTAATACTATAAATGATAAAAAGATTATTATAAATAAAAAAACTAAAGGACCAAAAAAATCAACATAAAGAAATAATCTAGGTACATTAAG</canonical>
            <polymorphic>TCTAAATTAAACTAAAAATTCTATCAGTAATAATATCTTAGTAACCCAAATACTATATTTTTATTAAACTATTTACTGATAAATAATATATATATATATATATATATATACATATATATATATATATATATATATATATATATATAATTATARTGTATATCATATTTATAATATAAATATGATATACATAATATATATATATATATATCATATTTATAAAATAAATATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAATCTTGTGTATGCAAAACACATATTTTTACTAAACTAAAACCCCATTTAACAAATTATAAAAAAAATAAAAATTAAAATTACAACACTGCTGAAATTTAACCTTTTTATATAGTAATTTTTAAAAATTCCAACTCTTAAAAATAAGGTATACCCCTTAGAATTGATATTATTTAAGAACAAATCTATAAATTTTAAATTTTTTATTTTATAGATCCTATTTTTAGCTAAATAATCTACTAAAAACTTATAAGTTAATTCTTTAAATAACATTTTTAATACTATAAATGATAAAAAGATTATTATAAATAAAAAAACTAAAGGACCAAAAAAATCAACATAAAGAAATAATCTAGGTACATTAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>305 278 155 112 67 42 24 11 6</canonical_bands>
                <polymorphic_bands>460 278 112 67 42 24 11 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAACAAATAAAATAAGAAAACCAG</pcr_primer_p1>
		<pcr_primer_p2>TTACAACTCTATTTGGGTGTACG</pcr_primer_p2>
		<pcr_amplicon_size>833</pcr_amplicon_size>
		<canonical_amplicon>AGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAA</canonical_amplicon>
		<polymorphic_amplicon>AGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36352</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>5339</contig_pos>
        <strand></strand>
        <context>taCAACACTG[C/T]TGAAATTTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCCCATTTAACAAATTATAAAAAAAATAAAAATTAAAATTACAACACTG</left_flank>
        <right_flank>TGAAATTTAACCTTTTTATATAGTAATTTTTAAAAATTCCAACTCTTAAA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAATCTTGTGTATGCAAAACACATATTTTTACTAAACTAAAACCCCATTTAACAAATTATAAAAAAAATAAAAATTAAAATTACAACACTGCTGAAATTTAACCTTTTTATATAGTAATTTTTAAAAATTCCAACTCTTAAAAATAAGGTATACCCCTTAGAATTGATATTATTTAAGAACAAATCTATAAATTTTAAATTTTTTATTTTATAGATCCTATTTTTAGCTAAATAATCTACTAAAAACTTATAAGTTAATTCTTTAAATAACATTTTTAATACTATAAATGATAAAAAGATTATTATAAATAAAAAAACTAAAGGACCAAAAAAATCAACATAAAGAAATAATCTAGGTACATTAAGTAAATTAAAATTTAATCATCATAAAAATCCAATAGAAAAAATAACTAAAGCTAAACTAAGAAAATTTATAAAAACTGTACTCCTGTAGTGATTTATAACTTTATTAAATCTTAAAAAAAATCTCTTTCAAAGACGAGAACTATATCCAAAAGTTAAAAATACTGAAACAAAAAATATCAATCTAAA</canonical>
            <polymorphic>ATGATATATATATATATAATATATATATATATATGAACATAAGATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAATCTTGTGTATGCAAAACACATATTTTTACTAAACTAAAACCCCATTTAACAAATTATAAAAAAAATAAAAATTAAAATTACAACACTGYTGAAATTTAACCTTTTTATATAGTAATTTTTAAAAATTCCAACTCTTAAAAATAAGGTATACCCCTTAGAATTGATATTATTTAAGAACAAATCTATAAATTTTAAATTTTTTATTTTATAGATCCTATTTTTAGCTAAATAATCTACTAAAAACTTATAAGTTAATTCTTTAAATAACATTTTTAATACTATAAATGATAAAAAGATTATTATAAATAAAAAAACTAAAGGACCAAAAAAATCAACATAAAGAAATAATCTAGGTACATTAAGTAAATTAAAATTTAATCATCATAAAAATCCAATAGAAAAAATAACTAAAGCTAAACTAAGAAAATTTATAAAAACTGTACTCCTGTAGTGATTTATAACTTTATTAAATCTTAAAAAAAATCTCTTTCAAAGACGAGAACTATATCCAAAAGTTAAAAATACTGAAACAAAAAATATCAATCTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACACGTACACCCAAATAGAGT</pcr_primer_p1>
		<pcr_primer_p2>AAGGGGTATACCTTATTTTTAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>184</pcr_amplicon_size>
		<canonical_amplicon>GTACACGTACACCCAAATAGAGTTGTAATCTTGTGTATGCAAAACACATATTTTTACTAAACTAAAACCCCATTTAACAAATTATAAAAAAAATAAAAATTAAAATTACAACACTGCTGAAATTTAACCTTTTTATATAGTAATTTTTAAAAATTCCAACTCTTAAAAATAAGGTATACCCCTT</canonical_amplicon>
		<polymorphic_amplicon>GTACACGTACACCCAAATAGAGTTGTAATCTTGTGTATGCAAAACACATATTTTTACTAAACTAAAACCCCATTTAACAAATTATAAAAAAAATAAAAATTAAAATTACAACACTGYTGAAATTTAACCTTTTTATATAGTAATTTTTAAAAATTCCAACTCTTAAAAATAAGGTATACCCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36353</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>5381</contig_pos>
        <strand></strand>
        <context>AAAAATTCCA[A/G]CTCTTAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAACACTGCTGAAATTTAACCTTTTTATATAGTAATTTTTAAAAATTCCA</left_flank>
        <right_flank>CTCTTAAAAATAAGGTATACCCCTTAGAATTGATATTATTTAAGAACAAA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAATCTTGTGTATGCAAAACACATATTTTTACTAAACTAAAACCCCATTTAACAAATTATAAAAAAAATAAAAATTAAAATTACAACACTGCTGAAATTTAACCTTTTTATATAGTAATTTTTAAAAATTCCAACTCTTAAAAATAAGGTATACCCCTTAGAATTGATATTATTTAAGAACAAATCTATAAATTTTAAATTTTTTATTTTATAGATCCTATTTTTAGCTAAATAATCTACTAAAAACTTATAAGTTAATTCTTTAAATAACATTTTTAATACTATAAATGATAAAAAGATTATTATAAATAAAAAAACTAAAGGACCAAAAAAATCAACATAAAGAAATAATCTAGGTACATTAAGTAAATTAAAATTTAATCATCATAAAAATCCAATAGAAAAAATAACTAAAGCTAAACTAAGAAAATTTATAAAAACTGTACTCCTGTAGTGATTTATAACTTTATTAAATCTTAAAAAAAATCTCTTTCAAAGACGAGAACTATATCCAAAAGTTAAAAATACTGAAACAAAAAATATCAATCTAAA</canonical>
            <polymorphic>GATAAATATATTTATCTTATATATTTATATATAAGATAAATAATATTCATCTTTTTTTTTTTTACTTCATCATATTTATAATATAAATATGATGATATAATTATACTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAATCTTGTGTATGCAAAACACATATTTTTACTAAACTAAAACCCCATTTAACAAATTATAAAAAAAATAAAAATTAAAATTACAACACTGCTGAAATTTAACCTTTTTATATAGTAATTTTTAAAAATTCCARCTCTTAAAAATAAGGTATACCCCTTAGAATTGATATTATTTAAGAACAAATCTATAAATTTTAAATTTTTTATTTTATAGATCCTATTTTTAGCTAAATAATCTACTAAAAACTTATAAGTTAATTCTTTAAATAACATTTTTAATACTATAAATGATAAAAAGATTATTATAAATAAAAAAACTAAAGGACCAAAAAAATCAACATAAAGAAATAATCTAGGTACATTAAGTAAATTAAAATTTAATCATCATAAAAATCCAATAGAAAAAATAACTAAAGCTAAACTAAGAAAATTTATAAAAACTGTACTCCTGTAGTGATTTATAACTTTATTAAATCTTAAAAAAAATCTCTTTCAAAGACGAGAACTATATCCAAAAGTTAAAAATACTGAAACAAAAAATATCAATCTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACTAAACTAAAACCCCATTTAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTATTGGATTTTTATGATGA</pcr_primer_p2>
		<pcr_amplicon_size>377</pcr_amplicon_size>
		<canonical_amplicon>TTACTAAACTAAAACCCCATTTAACAAATTATAAAAAAAATAAAAATTAAAATTACAACACTGCTGAAATTTAACCTTTTTATATAGTAATTTTTAAAAATTCCAACTCTTAAAAATAAGGTATACCCCTTAGAATTGATATTATTTAAGAACAAATCTATAAATTTTAAATTTTTTATTTTATAGATCCTATTTTTAGCTAAATAATCTACTAAAAACTTATAAGTTAATTCTTTAAATAACATTTTTAATACTATAAATGATAAAAAGATTATTATAAATAAAAAAACTAAAGGACCAAAAAAATCAACATAAAGAAATAATCTAGGTACATTAAGTAAATTAAAATTTAATCATCATAAAAATCCAATAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTACTAAACTAAAACCCCATTTAACAAATTATAAAAAAAATAAAAATTAAAATTACAACACTGCTGAAATTTAACCTTTTTATATAGTAATTTTTAAAAATTCCARCTCTTAAAAATAAGGTATACCCCTTAGAATTGATATTATTTAAGAACAAATCTATAAATTTTAAATTTTTTATTTTATAGATCCTATTTTTAGCTAAATAATCTACTAAAAACTTATAAGTTAATTCTTTAAATAACATTTTTAATACTATAAATGATAAAAAGATTATTATAAATAAAAAAACTAAAGGACCAAAAAAATCAACATAAAGAAATAATCTAGGTACATTAAGTAAATTAAAATTTAATCATCATAAAAATCCAATAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36354</snp_id>
        <super_contig>c011001351.Contig1</super_contig>
        <contig_pos>5581</contig_pos>
        <strand>+</strand>
        <context>GACCAAAAAA[A/C]TCAACATAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATAAATGATAAAAAGATTATTATAAATAAAAAAACTAAAGGACCAAAAAA</left_flank>
        <right_flank>TCAACATAAAGAAATAATCTAGGTACATTAAGTAAATTAAAATTTAATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAATCTTGTGTATGCAAAACACATATTTTTACTAAACTAAAACCCCATTTAACAAATTATAAAAAAAATAAAAATTAAAATTACAACACTGCTGAAATTTAACCTTTTTATATAGTAATTTTTAAAAATTCCAACTCTTAAAAATAAGGTATACCCCTTAGAATTGATATTATTTAAGAACAAATCTATAAATTTTAAATTTTTTATTTTATAGATCCTATTTTTAGCTAAATAATCTACTAAAAACTTATAAGTTAATTCTTTAAATAACATTTTTAATACTATAAATGATAAAAAGATTATTATAAATAAAAAAACTAAAGGACCAAAAAAATCAACATAAAGAAATAATCTAGGTACATTAAGTAAATTAAAATTTAATCATCATAAAAATCCAATAGAAAAAATAACTAAAGCTAAACTAAGAAAATTTATAAAAACTGTACTCCTGTAGTGATTTATAACTTTATTAAATCTTAAAAAAAATCTCTTTCAAAGACGAGAACTATATCCAAAAGTTAAAAATACTGAAACAAAAAATATCAATCTAAA</canonical>
            <polymorphic>ATTTATAATATAAATATGATATATAATTATAGTGTATATCATATTTATAATATAAATATGATATATAATTATAATGTATATCATATTTATATTATAAATATGATATACTATATATATATATATATATATATATAAACGCGCGTACACGTACACCCAAATAGAGTTGTAATCTTGTGTATGCAAAACACATATTTTTACTAAACTAAAACCCCATTTAACAAATTATAAAAAAAATAAAAATTAAAATTACAACACTGCTGAAATTTAACCTTTTTATATAGTAATTTTTAAAAATTCCAACTCTTAAAAATAAGGTATACCCCTTAGAATTGATATTATTTAAGAACAAATCTATAAATTTTAAATTTTTTATTTTATAGATCCTATTTTTAGCTAAATAATCTACTAAAAACTTATAAGTTAATTCTTTAAATAACATTTTTAATACTATAAATGATAAAAAGATTATTATAAATAAAAAAACTAAAGGACCAAAAAAMTCAACATAAAGAAATAATCTAGGTACATTAAGTAAATTAAAATTTAATCATCATAAAAATCCAATAGAAAAAATAACTAAAGCTAAACTAAGAAAATTTATAAAAACTGTACTCCTGTAGTGATTTATAACTTTATTAAATCTTAAAAAAAATCTCTTTCAAAGACGAGAACTATATCCAAAAGTTAAAAATACTGAAACAAAAAATATCAATCTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGTATACCCCTTAGAATTGAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTATTGGATTTTTATGATGA</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>AAGGTATACCCCTTAGAATTGATATTATTTAAGAACAAATCTATAAATTTTAAATTTTTTATTTTATAGATCCTATTTTTAGCTAAATAATCTACTAAAAACTTATAAGTTAATTCTTTAAATAACATTTTTAATACTATAAATGATAAAAAGATTATTATAAATAAAAAAACTAAAGGACCAAAAAAATCAACATAAAGAAATAATCTAGGTACATTAAGTAAATTAAAATTTAATCATCATAAAAATCCAATAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAGGTATACCCCTTAGAATTGATATTATTTAAGAACAAATCTATAAATTTTAAATTTTTTATTTTATAGATCCTATTTTTAGCTAAATAATCTACTAAAAACTTATAAGTTAATTCTTTAAATAACATTTTTAATACTATAAATGATAAAAAGATTATTATAAATAAAAAAACTAAAGGACCAAAAAAMTCAACATAAAGAAATAATCTAGGTACATTAAGTAAATTAAAATTTAATCATCATAAAAATCCAATAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36355</snp_id>
        <super_contig>c011001354.Contig3</super_contig>
        <contig_pos>3569</contig_pos>
        <strand></strand>
        <context>ctgagaatct[A/G]agaatttcgg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCAGAATTCGCAATCTGAAAATCCCGTAACTTCAGAATCTGAGAATCT</left_flank>
        <right_flank>AGAATTTCGGATCTTCAGAATCTGATAATGCTAAAAATTAAAAATATCAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAGAATCAATAAGAAATGTATTCACTATTGGAGTTTATAGCTTTTTGCCAGCGCAACAAAAGTTGGATGATTTGAATGGCCAAAAATTCGGGGGGTACAATGATTCGGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAATTGGTGATTCGGGGGTACAAAATTCGTGGGTACAAAAATTCGGGGGTACAACGATTCGGGGGTACAATCTACCAATGATTCTGGGGTACAACTTATTTCATTTAGGGGTTCAACGTTTGTGATTCGGTGGTACCATTTTTTTTGACGAAGTTTCTGAAATCCTGAATTTCAGAGCTTGAGAATCTCAGAATTCGGAATCTGAGAATTTCGAAACTTCAGAGTCTGAGAATTTGAAAATTTCAGAACTTCAAAATCTCAGAATTACAGAACTTCAGAATTCTTAGAATTTCAGAACTTTGGAATTCCAGAATTCGCAATCTGAAAATCCCGTAACTTCAGAATCTGAGAATCTAAGAATTTCGGATCTTCAGAATCTGATAATGCTAAAAATTAAAAATATCAGAACTTCGGAACTTCAAAACTTCAGGACTTCAAAATCTCAATATTTCAATAAAGACAATGAGAACTGTGAAATGATTTTAACAAATTTTACAAACGGATTTTAATGCCAGTCGATACTTTCCTCACTTCCAATTTTGCCCAATTTTATTTCTTAATTCTTTTTCATTTCCTTTTGTTTCTCAATATTCCTTCGTTTTTTCAAAAAAGAAAAAAATCCTGCATAACTGATTTACATTAAGCAAGCTTGGGGTTTTAATTACTGAGTTGCTTGTGTTGCTACAAAACTAAATGTGTTAAAGCAATTAATTCTAAGCAAGAAATTTCTAGAAGTCTGCAAAAATCAGAAAAAATTCGAAAAAATGAACGGAACGACTAGTGGTCCGGAACAAAATTCCTGTCAGTCCCTAAATCACTAAAATTAACTGGCTTATCTACACATGAGGTGATTAAA</canonical>
            <polymorphic>ATAAGAATCAATAAGAAATGTATTCACTATTGGAGTTTATAGCTTTTTGCCAGCGCAACAAAAGTTGGATGATTTGAATGGCCAAAAATTCGGGGGGTACAATGATTCGGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAATTGGTGATTCGGGGGTACAAAATTCGTGGGTACAAAAATTCGGGGGTACAACGATTCGGGGGTACAATCTACCAATGATTCTGGGGTACAACTTATTTCATTTAGGGGTTCAACGTTTGTGATTCGGTGGTACCATTTTTTTTGACGAAGTTTCTGAAATCCTGAATTTCAGAGCTTGAGAATCTCAGAATTCGGAATCTGAGAATTTCGAAACTTCAGAGTCTGAGAATTTGAAAATTTCAGAACTTCAAAATCTCAGAATTACAGAACTTCAGAATTCTTAGAATTTCAGAACTTTGGAATTCCAGAATTCGCAATCTGAAAATCCCGTAACTTCAGAATCTGAGAATCTRAGAATTTCGGATCTTCAGAATCTGATAATGCTAAAAATTAAAAATATCAGAACTTCGGAACTTCAAAACTTCAGGACTTCAAAATCTCAATATTTCAATAAAGACAATGAGAACTGTGAAATGATTTTAACAAATTTTACAAACGGATTTTAATGCCAGTCGATACTTTCCTCACTTCCAATTTTGCCCAATTTTATTTCTTAATTCTTTTTCATTTCCTTTTGTTTCTCAATATTCCTTCGTTTTTTCAAAAAAGAAAAAAATCCTGCATAACTGATTTACATTAAGCAAGCTTGGGGTTTTAATTACTGAGTTGCTTGTGTTGCTACAAAACTAAATGTGTTAAAGCAATTAATTCTAAGCAAGAAATTTCTAGAAGTCTGCAAAAATCAGAAAAAATTCGAAAAAATGAACGGAACGACTAGTGGTCCGGAACAAAATTCCTGTCAGTCCCTAAATCACTAAAATTAACTGGCTTATCTACACATGAGGTGATTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTATTTCATTTAGGGGTTCAA</pcr_primer_p1>
		<pcr_primer_p2>GTCCTGAAGTTTTGAAGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>339</pcr_amplicon_size>
		<canonical_amplicon>CTTATTTCATTTAGGGGTTCAACGTTTGTGATTCGGTGGTACCATTTTTTTTGACGAAGTTTCTGAAATCCTGAATTTCAGAGCTTGAGAATCTCAGAATTCGGAATCTGAGAATTTCGAAACTTCAGAGTCTGAGAATTTGAAAATTTCAGAACTTCAAAATCTCAGAATTACAGAACTTCAGAATTCTTAGAATTTCAGAACTTTGGAATTCCAGAATTCGCAATCTGAAAATCCCGTAACTTCAGAATCTGAGAATCTAAGAATTTCGGATCTTCAGAATCTGATAATGCTAAAAATTAAAAATATCAGAACTTCGGAACTTCAAAACTTCAGGAC</canonical_amplicon>
		<polymorphic_amplicon>CTTATTTCATTTAGGGGTTCAACGTTTGTGATTCGGTGGTACCATTTTTTTTGACGAAGTTTCTGAAATCCTGAATTTCAGAGCTTGAGAATCTCAGAATTCGGAATCTGAGAATTTCGAAACTTCAGAGTCTGAGAATTTGAAAATTTCAGAACTTCAAAATCTCAGAATTACAGAACTTCAGAATTCTTAGAATTTCAGAACTTTGGAATTCCAGAATTCGCAATCTGAAAATCCCGTAACTTCAGAATCTGAGAATCTRAGAATTTCGGATCTTCAGAATCTGATAATGCTAAAAATTAAAAATATCAGAACTTCGGAACTTCAAAACTTCAGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36356</snp_id>
        <super_contig>c011001354.Contig3</super_contig>
        <contig_pos>3615</contig_pos>
        <strand></strand>
        <context>AATTAAAAAT[A/C]TCAGAACTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCTAAGAATTTCGGATCTTCAGAATCTGATAATGCTAAAAATTAAAAAT</left_flank>
        <right_flank>TCAGAACTTCGGAACTTCAAAACTTCAGGACTTCAAAATCTCAATATTTC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCCAGCGCAACAAAAGTTGGATGATTTGAATGGCCAAAAATTCGGGGGGTACAATGATTCGGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAATTGGTGATTCGGGGGTACAAAATTCGTGGGTACAAAAATTCGGGGGTACAACGATTCGGGGGTACAATCTACCAATGATTCTGGGGTACAACTTATTTCATTTAGGGGTTCAACGTTTGTGATTCGGTGGTACCATTTTTTTTGACGAAGTTTCTGAAATCCTGAATTTCAGAGCTTGAGAATCTCAGAATTCGGAATCTGAGAATTTCGAAACTTCAGAGTCTGAGAATTTGAAAATTTCAGAACTTCAAAATCTCAGAATTACAGAACTTCAGAATTCTTAGAATTTCAGAACTTTGGAATTCCAGAATTCGCAATCTGAAAATCCCGTAACTTCAGAATCTGAGAATCTAAGAATTTCGGATCTTCAGAATCTGATAATGCTAAAAATTAAAAATATCAGAACTTCGGAACTTCAAAACTTCAGGACTTCAAAATCTCAATATTTCAATAAAGACAATGAGAACTGTGAAATGATTTTAACAAATTTTACAAACGGATTTTAATGCCAGTCGATACTTTCCTCACTTCCAATTTTGCCCAATTTTATTTCTTAATTCTTTTTCATTTCCTTTTGTTTCTCAATATTCCTTCGTTTTTTCAAAAAAGAAAAAAATCCTGCATAACTGATTTACATTAAGCAAGCTTGGGGTTTTAATTACTGAGTTGCTTGTGTTGCTACAAAACTAAATGTGTTAAAGCAATTAATTCTAAGCAAGAAATTTCTAGAAGTCTGCAAAAATCAGAAAAAATTCGAAAAAATGAACGGAACGACTAGTGGTCCGGAACAAAATTCCTGTCAGTCCCTAAATCACTAAAATTAACTGGCTTATCTACACATGAGGTGATTAAAGTAGACAACTCACCAAACTTTCATCAAGCCAAGATGAGCAATTCCA</canonical>
            <polymorphic>TTGCCAGCGCAACAAAAGTTGGATGATTTGAATGGCCAAAAATTCGGGGGGTACAATGATTCGGGGGTACAAGGGGGTACAACTGATTTAGGGGTACAAAATTGGTGATTCGGGGGTACAAAATTCGTGGGTACAAAAATTCGGGGGTACAACGATTCGGGGGTACAATCTACCAATGATTCTGGGGTACAACTTATTTCATTTAGGGGTTCAACGTTTGTGATTCGGTGGTACCATTTTTTTTGACGAAGTTTCTGAAATCCTGAATTTCAGAGCTTGAGAATCTCAGAATTCGGAATCTGAGAATTTCGAAACTTCAGAGTCTGAGAATTTGAAAATTTCAGAACTTCAAAATCTCAGAATTACAGAACTTCAGAATTCTTAGAATTTCAGAACTTTGGAATTCCAGAATTCGCAATCTGAAAATCCCGTAACTTCAGAATCTGAGAATCTAAGAATTTCGGATCTTCAGAATCTGATAATGCTAAAAATTAAAAATMTCAGAACTTCGGAACTTCAAAACTTCAGGACTTCAAAATCTCAATATTTCAATAAAGACAATGAGAACTGTGAAATGATTTTAACAAATTTTACAAACGGATTTTAATGCCAGTCGATACTTTCCTCACTTCCAATTTTGCCCAATTTTATTTCTTAATTCTTTTTCATTTCCTTTTGTTTCTCAATATTCCTTCGTTTTTTCAAAAAAGAAAAAAATCCTGCATAACTGATTTACATTAAGCAAGCTTGGGGTTTTAATTACTGAGTTGCTTGTGTTGCTACAAAACTAAATGTGTTAAAGCAATTAATTCTAAGCAAGAAATTTCTAGAAGTCTGCAAAAATCAGAAAAAATTCGAAAAAATGAACGGAACGACTAGTGGTCCGGAACAAAATTCCTGTCAGTCCCTAAATCACTAAAATTAACTGGCTTATCTACACATGAGGTGATTAAAGTAGACAACTCACCAAACTTTCATCAAGCCAAGATGAGCAATTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTATTTCATTTAGGGGTTCAA</pcr_primer_p1>
		<pcr_primer_p2>GTCTTTATTGAAATATTGAGATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>367</pcr_amplicon_size>
		<canonical_amplicon>CTTATTTCATTTAGGGGTTCAACGTTTGTGATTCGGTGGTACCATTTTTTTTGACGAAGTTTCTGAAATCCTGAATTTCAGAGCTTGAGAATCTCAGAATTCGGAATCTGAGAATTTCGAAACTTCAGAGTCTGAGAATTTGAAAATTTCAGAACTTCAAAATCTCAGAATTACAGAACTTCAGAATTCTTAGAATTTCAGAACTTTGGAATTCCAGAATTCGCAATCTGAAAATCCCGTAACTTCAGAATCTGAGAATCTAAGAATTTCGGATCTTCAGAATCTGATAATGCTAAAAATTAAAAATATCAGAACTTCGGAACTTCAAAACTTCAGGACTTCAAAATCTCAATATTTCAATAAAGAC</canonical_amplicon>
		<polymorphic_amplicon>CTTATTTCATTTAGGGGTTCAACGTTTGTGATTCGGTGGTACCATTTTTTTTGACGAAGTTTCTGAAATCCTGAATTTCAGAGCTTGAGAATCTCAGAATTCGGAATCTGAGAATTTCGAAACTTCAGAGTCTGAGAATTTGAAAATTTCAGAACTTCAAAATCTCAGAATTACAGAACTTCAGAATTCTTAGAATTTCAGAACTTTGGAATTCCAGAATTCGCAATCTGAAAATCCCGTAACTTCAGAATCTGAGAATCTAAGAATTTCGGATCTTCAGAATCTGATAATGCTAAAAATTAAAAATMTCAGAACTTCGGAACTTCAAAACTTCAGGACTTCAAAATCTCAATATTTCAATAAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36357</snp_id>
        <super_contig>c011001354.Contig3</super_contig>
        <contig_pos>3746</contig_pos>
        <strand></strand>
        <context>TTTCCTCACT[T/G]CCAATTTTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTAACAAATTTTACAAACGGATTTTAATGCCAGTCGATACTTTCCTCACT</left_flank>
        <right_flank>CCAATTTTGCCCAATTTTATTTCTTAATTCTTTTTCATTTCCTTTTGTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACAAAAATTCGGGGGTACAACGATTCGGGGGTACAATCTACCAATGATTCTGGGGTACAACTTATTTCATTTAGGGGTTCAACGTTTGTGATTCGGTGGTACCATTTTTTTTGACGAAGTTTCTGAAATCCTGAATTTCAGAGCTTGAGAATCTCAGAATTCGGAATCTGAGAATTTCGAAACTTCAGAGTCTGAGAATTTGAAAATTTCAGAACTTCAAAATCTCAGAATTACAGAACTTCAGAATTCTTAGAATTTCAGAACTTTGGAATTCCAGAATTCGCAATCTGAAAATCCCGTAACTTCAGAATCTGAGAATCTAAGAATTTCGGATCTTCAGAATCTGATAATGCTAAAAATTAAAAATATCAGAACTTCGGAACTTCAAAACTTCAGGACTTCAAAATCTCAATATTTCAATAAAGACAATGAGAACTGTGAAATGATTTTAACAAATTTTACAAACGGATTTTAATGCCAGTCGATACTTTCCTCACTTCCAATTTTGCCCAATTTTATTTCTTAATTCTTTTTCATTTCCTTTTGTTTCTCAATATTCCTTCGTTTTTTCAAAAAAGAAAAAAATCCTGCATAACTGATTTACATTAAGCAAGCTTGGGGTTTTAATTACTGAGTTGCTTGTGTTGCTACAAAACTAAATGTGTTAAAGCAATTAATTCTAAGCAAGAAATTTCTAGAAGTCTGCAAAAATCAGAAAAAATTCGAAAAAATGAACGGAACGACTAGTGGTCCGGAACAAAATTCCTGTCAGTCCCTAAATCACTAAAATTAACTGGCTTATCTACACATGAGGTGATTAAAGTAGACAACTCACCAAACTTTCATCAAGCCAAGATGAGCAATTCCATAATCCAACGAAATGCATCCAATGGACAACAGACAAGAAATTAAATCTGACGGAAGTTTAATTTTGTTGATCATTTGAATTTCATCAAAATCAGTATGTTCATGCTAATATTTCGTCTGATAACCTGTCTT</canonical>
            <polymorphic>TACAAAAATTCGGGGGTACAACGATTCGGGGGTACAATCTACCAATGATTCTGGGGTACAACTTATTTCATTTAGGGGTTCAACGTTTGTGATTCGGTGGTACCATTTTTTTTGACGAAGTTTCTGAAATCCTGAATTTCAGAGCTTGAGAATCTCAGAATTCGGAATCTGAGAATTTCGAAACTTCAGAGTCTGAGAATTTGAAAATTTCAGAACTTCAAAATCTCAGAATTACAGAACTTCAGAATTCTTAGAATTTCAGAACTTTGGAATTCCAGAATTCGCAATCTGAAAATCCCGTAACTTCAGAATCTGAGAATCTAAGAATTTCGGATCTTCAGAATCTGATAATGCTAAAAATTAAAAATATCAGAACTTCGGAACTTCAAAACTTCAGGACTTCAAAATCTCAATATTTCAATAAAGACAATGAGAACTGTGAAATGATTTTAACAAATTTTACAAACGGATTTTAATGCCAGTCGATACTTTCCTCACTKCCAATTTTGCCCAATTTTATTTCTTAATTCTTTTTCATTTCCTTTTGTTTCTCAATATTCCTTCGTTTTTTCAAAAAAGAAAAAAATCCTGCATAACTGATTTACATTAAGCAAGCTTGGGGTTTTAATTACTGAGTTGCTTGTGTTGCTACAAAACTAAATGTGTTAAAGCAATTAATTCTAAGCAAGAAATTTCTAGAAGTCTGCAAAAATCAGAAAAAATTCGAAAAAATGAACGGAACGACTAGTGGTCCGGAACAAAATTCCTGTCAGTCCCTAAATCACTAAAATTAACTGGCTTATCTACACATGAGGTGATTAAAGTAGACAACTCACCAAACTTTCATCAAGCCAAGATGAGCAATTCCATAATCCAACGAAATGCATCCAATGGACAACAGACAAGAAATTAAATCTGACGGAAGTTTAATTTTGTTGATCATTTGAATTTCATCAAAATCAGTATGTTCATGCTAATATTTCGTCTGATAACCTGTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAATGAGAACTGTGAAATGAT</pcr_primer_p1>
		<pcr_primer_p2>TTGCTTTAACACATTTAGTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GACAATGAGAACTGTGAAATGATTTTAACAAATTTTACAAACGGATTTTAATGCCAGTCGATACTTTCCTCACTTCCAATTTTGCCCAATTTTATTTCTTAATTCTTTTTCATTTCCTTTTGTTTCTCAATATTCCTTCGTTTTTTCAAAAAAGAAAAAAATCCTGCATAACTGATTTACATTAAGCAAGCTTGGGGTTTTAATTACTGAGTTGCTTGTGTTGCTACAAAACTAAATGTGTTAAAGCAA</canonical_amplicon>
		<polymorphic_amplicon>GACAATGAGAACTGTGAAATGATTTTAACAAATTTTACAAACGGATTTTAATGCCAGTCGATACTTTCCTCACTKCCAATTTTGCCCAATTTTATTTCTTAATTCTTTTTCATTTCCTTTTGTTTCTCAATATTCCTTCGTTTTTTCAAAAAAGAAAAAAATCCTGCATAACTGATTTACATTAAGCAAGCTTGGGGTTTTAATTACTGAGTTGCTTGTGTTGCTACAAAACTAAATGTGTTAAAGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36358</snp_id>
        <super_contig>c011001354.Contig3</super_contig>
        <contig_pos>6033</contig_pos>
        <strand>+</strand>
        <context>AACAGAAGAC[A/G]AGCCTGCAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAACCACTTCCTAGACGAATTCGCTCACGCTCAGAAGGAGAACAGAAGAC</left_flank>
        <right_flank>AGCCTGCAATAATATATTTAAGCATTGAGCTTTTGAAATCTATGAAACAT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTTTTAGATTGGACTTTTGGAGTAATTGAAAGAGAACCAACAAAATGGGCCAAATCGTTGGAAGCAGTCATCTTCTTTGTCTTCTTCTTTGGAGGAGCGGCTACGTCGGGGACGTGGAACATATCCAACGGATAACATCGTGACGGGGCTGAACAACGACGAGGTCGATGCTACTGATTAGTTGAAGGAACCGAAGTCGGAGTAGCAGTTGCTTCTCAACTACATCCGAAGCGCCTGGAAATCCAGAAATCAGGCCACCTGATCACATGAATACGAAACAATTACCTTTACTGCTTTCACGGTTCCAATCTCTTAGTCTTCACTGGTAGATAGATCTTTCTCCTTGGGAGTGTTCGGTGGGTCGACATTCGCCATGATCGCTTCGACTGTTTTTTTCTTAGTGTTGATAACGGCTGCGGGACTTGGAGTTTCATTCTTTTGCAGCTTGAACCACTTCCTAGACGAATTCGCTCACGCTCAGAAGGAGAACAGAAGACAAGCCTGCAATAATATATTTAAGCATTGAGCTTTTGAAATCTATGAAACATATCTTCTTCATTATCCGGTCCCGATTGGATAGGTTCGATATTTTCGCCGTTATCCTCTTGCATGTCAGGCTTCTCAAACGACACCTACACGTGAGAAGAGGATATAATAGTTCAGCACGCTTCCAAACCCAGTGACTAGTCTACCACACTCAACTCATATGTATTCTTATCGAACAATCTCAATTGGAAAAGCTTGTCTAGAGAATCCATTTTCATTGTGATCCTGTCGTTTGATTTCTCCCTGAAATCGCTTTTTACAGTTGAAATACATTTTTTTCTGCGTTTGTGTTGATCCATCTTTCCATCTGCTGCGTTTGTGTTGATCCATCTTTTCATCGGCTGCGTTTGTGTTGATCCATCTTTTTATCTGCTGCGTTTGTGTTGATCCATCTTTTCAGCGGCTGCGTTTGGGTCTATCCATCTTTTAGCCATTTCGTTGATTTCAAATCT</canonical>
            <polymorphic>CCTTTTTAGATTGGACTTTTGGAGTAATTGAAAGAGAACCAACAAAATGGGCCAAATCGTTGGAAGCAGTCATCTTCTTTGTCTTCTTCTTTGGAGGAGCGGCTACGTCGGGGACGTGGAACATATCCAACGGATAACATCGTGACGGGGCTGAACAACGACGAGGTCGATGCTACTGATTAGTTGAAGGAACCGAAGTCGGAGTAGCAGTTGCTTCTCAACTACATCCGAAGCGCCTGGAAATCCAGAAATCAGGCCACCTGATCACATGAATACGAAACAATTACCTTTACTGCTTTCACGGTTCCAATCTCTTAGTCTTCACTGGTAGATAGATCTTTCTCCTTGGGAGTGTTCGGTGGGTCGACATTCGCCATGATCGCTTCGACTGTTTTTTTCTTAGTGTTGATAACGGCTGCGGGACTTGGAGTTTCATTCTTTTGCAGCTTGAACCACTTCCTAGACGAATTCGCTCACGCTCAGAAGGAGAACAGAAGACRAGCCTGCAATAATATATTTAAGCATTGAGCTTTTGAAATCTATGAAACATATCTTCTTCATTATCCGGTCCCGATTGGATAGGTTCGATATTTTCGCCGTTATCCTCTTGCATGTCAGGCTTCTCAAACGACACCTACACGTGAGAAGAGGATATAATAGTTCAGCACGCTTCCAAACCCAGTGACTAGTCTACCACACTCAACTCATATGTATTCTTATCGAACAATCTCAATTGGAAAAGCTTGTCTAGAGAATCCATTTTCATTGTGATCCTGTCGTTTGATTTCTCCCTGAAATCGCTTTTTACAGTTGAAATACATTTTTTTCTGCGTTTGTGTTGATCCATCTTTCCATCTGCTGCGTTTGTGTTGATCCATCTTTTCATCGGCTGCGTTTGTGTTGATCCATCTTTTTATCTGCTGCGTTTGTGTTGATCCATCTTTTCAGCGGCTGCGTTTGGGTCTATCCATCTTTTAGCCATTTCGTTGATTTCAAATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTTGGAGTTTCATTCTTTTG</pcr_primer_p1>
		<pcr_primer_p2>AGCGTGCTGAACTATTATATCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACTTGGAGTTTCATTCTTTTGCAGCTTGAACCACTTCCTAGACGAATTCGCTCACGCTCAGAAGGAGAACAGAAGACAAGCCTGCAATAATATATTTAAGCATTGAGCTTTTGAAATCTATGAAACATATCTTCTTCATTATCCGGTCCCGATTGGATAGGTTCGATATTTTCGCCGTTATCCTCTTGCATGTCAGGCTTCTCAAACGACACCTACACGTGAGAAGAGGATATAATAGTTCAGCACGCT</canonical_amplicon>
		<polymorphic_amplicon>GACTTGGAGTTTCATTCTTTTGCAGCTTGAACCACTTCCTAGACGAATTCGCTCACGCTCAGAAGGAGAACAGAAGACRAGCCTGCAATAATATATTTAAGCATTGAGCTTTTGAAATCTATGAAACATATCTTCTTCATTATCCGGTCCCGATTGGATAGGTTCGATATTTTCGCCGTTATCCTCTTGCATGTCAGGCTTCTCAAACGACACCTACACGTGAGAAGAGGATATAATAGTTCAGCACGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36359</snp_id>
        <super_contig>c011001354.Contig3</super_contig>
        <contig_pos>78916</contig_pos>
        <strand>+</strand>
        <context>GCGCCTGATT[A/G]CATAGAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCCGGCGCCTGATT</left_flank>
        <right_flank>CATAGAAAAAGGCGAGGACGACAGTTGTAAGCAGAGTGACATTAAGCGTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAATACTCTCTCGTCCTCTCTCTTTTCTTTCCACGCTCTCTCGCTGACCGTCTGGCTCTCTAGTTCCTTCGGTTACTCTCCCAATAGTCCCTTTTTATTCATCTATTCTACTCACCCACTGACTGGTATCTGATTTTCACCGGTCTAAAATACCCTGATTTTCATCAATATTCCTCGCTCCAAAATGGTCTGGTACTGAATCAGGACCTTTTGGAGTGTATTCCCTATTTTTCTGAAATTCTATTCCACAAGATACACGATTTCTGAAGCTCAAATTAGAAGAAGAGAAGCTCCAAAAGTTCCAGAAGAGCAAGCTCCGAACAAAACACCAGTGGTCAGAATGGTGCTCAGTAAGTTCAAAATTTGAAATCTATTTTTTCGAGGTGTGTACCTTTAAACGGGGCCCCTCAAGGAGTCGAACTTGTGTGAGCAAGGATTGAGGGTGTGGTGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCCGGCGCCTGATTACATAGAAAAAGGCGAGGACGACAGTTGTAAGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTGGCTACAAAAATCCTACGAAAAATCTCCTGTCCTCCCACCTTTAAATATGTTTCCAACCAAATCTTTTTTGAGTCGTATTTCAAACCCTCTCATTTACAGGTACCCACCCGGAGGGATCCTTCTTATCTGTACCTACCCCGAGCGAAATGGAATATGTGGCTATGTGAACAACTGTGTAGCTATAAATGAGAGCTTTTCAGCTCACACGTAAGTTTCCAGGTCTCTGACATTCAACCCTTAACTTTTTCAGAAGGTGCTTCCGTTTCATGTGCCAATGTGGAAGACAATTTTTGGAGCAAGTCTCTGTAGGGGACCATCAAAGGAAGTGTGATATGGTAAGTTTATACTGTAACCTACACTTTGAGCTCAATTATCTCGATTCTTTTAAAAAATATGGAAAAGTTGTCAACTGATAAAATG</canonical>
            <polymorphic>ACAATACTCTCTCGTCCTCTCTCTTTTCTTTCCACGCTCTCTCGCTGACCGTCTGGCTCTCTAGTTCCTTCGGTTACTCTCCCAATAGTCCCTTTTTATTCATCTATTCTACTCACCCACTGACTGGTATCTGATTTTCACCGGTCTAAAATACCCTGATTTTCATCAATATTCCTCGCTCCAAAATGGTCTGGTACTGAATCAGGACCTTTTGGAGTGTATTCCCTATTTTTCTGAAATTCTATTCCACAAGATACACGATTTCTGAAGCTCAAATTAGAAGAAGAGAAGCTCCAAAAGTTCCAGAAGAGCAAGCTCCGAACAAAACACCAGTGGTCAGAATGGTGCTCAGTAAGTTCAAAATTTGAAATCTATTTTTTCGAGGTGTGTACCTTTAAACGGGGCCCCTCAAGGAGTCGAACTTGTGTGAGCAAGGATTGAGGGTGTGGTGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCCGGCGCCTGATTRCATAGAAAAAGGCGAGGACGACAGTTGTAAGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTGGCTACAAAAATCCTACGAAAAATCTCCTGTCCTCCCACCTTTAAATATGTTTCCAACCAAATCTTTTTTGAGTCGTATTTCAAACCCTCTCATTTACAGGTACCCACCCGGAGGGATCCTTCTTATCTGTACCTACCCCGAGCGAAATGGAATATGTGGCTATGTGAACAACTGTGTAGCTATAAATGAGAGCTTTTCAGCTCACACGTAAGTTTCCAGGTCTCTGACATTCAACCCTTAACTTTTTCAGAAGGTGCTTCCGTTTCATGTGCCAATGTGGAAGACAATTTTTGGAGCAAGTCTCTGTAGGGGACCATCAAAGGAAGTGTGATATGGTAAGTTTATACTGTAACCTACACTTTGAGCTCAATTATCTCGATTCTTTTAAAAAATATGGAAAAGTTGTCAACTGATAAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTTGTGTGAGCAAGGAT</pcr_primer_p1>
		<pcr_primer_p2>GGTTTGAAATACGACTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAACTTGTGTGAGCAAGGATTGAGGGTGTGGTGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCCGGCGCCTGATTACATAGAAAAAGGCGAGGACGACAGTTGTAAGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTGGCTACAAAAATCCTACGAAAAATCTCCTGTCCTCCCACCTTTAAATATGTTTCCAACCAAATCTTTTTTGAGTCGTATTTCAAACC</canonical_amplicon>
		<polymorphic_amplicon>GAACTTGTGTGAGCAAGGATTGAGGGTGTGGTGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCCGGCGCCTGATTRCATAGAAAAAGGCGAGGACGACAGTTGTAAGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTGGCTACAAAAATCCTACGAAAAATCTCCTGTCCTCCCACCTTTAAATATGTTTCCAACCAAATCTTTTTTGAGTCGTATTTCAAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36360</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>2603</contig_pos>
        <strand>+</strand>
        <context>CTTGCGCACA[A/G]AAGCGTCGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACGACATCCTGATTGCTGACCCCTATATCGAAGGCCTCCCTTGCGCACA</left_flank>
        <right_flank>AAGCGTCGTGCTCTTCTGGCATCTCCTCCAGAAGCGTTCAAATCCTGGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCATACTATCAGCAACACTTCATCAGTTAACAACTTTTTGATATCTTCCACAGTAACCGAGATAATTCAGCTCAAGGTTGACGGTGTAGATGGGCTTCTACCAGAGCAAATACGGCTGCCGTAACCAAATCACCAAGTTTGAGTCAATTTATCTCGGTACCTGTAAGAGATATCAAAATGTAGTCAACTAGCAAAATGTTCATCATAATATCACCAAATATTTATCAGTTGATCACTTAACGATATCTTCTATAGGAACTTAGATATATGAGATTTTTCAGGAAACCGCCCTTCGATATATTGTTCATGTGATTGACGCGCTGGCATATCTACACGAAAAGAAGCATGTTCATGGAAAATTGAATGGTAAAGAGTCCTTATAAAGGACCCCCTGCGCCTTTTAATTCAGGATCATTTTCAGCCTCCAACCTCCTCCTAACCATCTCCAACGACATCCTGATTGCTGACCCCTATATCGAAGGCCTCCCTTGCGCACAAAAGCGTCGTGCTCTTCTGGCATCTCCTCCAGAAGCGTTCAAATCCTGGGAGTCATATCCGTGTCTAACGCCTTCTTCAGACATCTGGTCCGTCGGGTGTGTGCTCGTGACGATGCTCACCAGATATCCACCATTTCTGGATCATTTCATGCATTTTCATGGGGATGCCTTGCATAGGGTGAGTGGCTTTGAGCTCAATTATCTCCACTCCCATGAAATATATCAAAATTCTGTCAACTGATAAAATATTGGTGATATTGTGATGAACAATTTATCAACAAATTTTTGATATATCTCAAAATAACCAAGACAATTGAGCTCAAAGTTTATACCTTAAGCTCAGGCCTTTAAAGTTTAAACAAGCTAAACAAATTCCAGGAACTCGTCGCCGAATGGACCGACCGCCACCGATTGGTCTACTCAAGTCGAAATCTGATTCCAGACGCCACCAAAGACATTTGCGACCTGGTAGATCAAATTTTCATCGTCGACCCTTCACGC</canonical>
            <polymorphic>TCTCATACTATCAGCAACACTTCATCAGTTAACAACTTTTTGATATCTTCCACAGTAACCGAGATAATTCAGCTCAAGGTTGACGGTGTAGATGGGCTTCTACCAGAGCAAATACGGCTGCCGTAACCAAATCACCAAGTTTGAGTCAATTTATCTCGGTACCTGTAAGAGATATCAAAATGTAGTCAACTAGCAAAATGTTCATCATAATATCACCAAATATTTATCAGTTGATCACTTAACGATATCTTCTATAGGAACTTAGATATATGAGATTTTTCAGGAAACCGCCCTTCGATATATTGTTCATGTGATTGACGCGCTGGCATATCTACACGAAAAGAAGCATGTTCATGGAAAATTGAATGGTAAAGAGTCCTTATAAAGGACCCCCTGCGCCTTTTAATTCAGGATCATTTTCAGCCTCCAACCTCCTCCTAACCATCTCCAACGACATCCTGATTGCTGACCCCTATATCGAAGGCCTCCCTTGCGCACARAAGCGTCGTGCTCTTCTGGCATCTCCTCCAGAAGCGTTCAAATCCTGGGAGTCATATCCGTGTCTAACGCCTTCTTCAGACATCTGGTCCGTCGGGTGTGTGCTCGTGACGATGCTCACCAGATATCCACCATTTCTGGATCATTTCATGCATTTTCATGGGGATGCCTTGCATAGGGTGAGTGGCTTTGAGCTCAATTATCTCCACTCCCATGAAATATATCAAAATTCTGTCAACTGATAAAATATTGGTGATATTGTGATGAACAATTTATCAACAAATTTTTGATATATCTCAAAATAACCAAGACAATTGAGCTCAAAGTTTATACCTTAAGCTCAGGCCTTTAAAGTTTAAACAAGCTAAACAAATTCCAGGAACTCGTCGCCGAATGGACCGACCGCCACCGATTGGTCTACTCAAGTCGAAATCTGATTCCAGACGCCACCAAAGACATTTGCGACCTGGTAGATCAAATTTTCATCGTCGACCCTTCACGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCTACACGAAAAGAAGCATGT</pcr_primer_p1>
		<pcr_primer_p2>CTGAAGAAGGCGTTAGACAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATCTACACGAAAAGAAGCATGTTCATGGAAAATTGAATGGTAAAGAGTCCTTATAAAGGACCCCCTGCGCCTTTTAATTCAGGATCATTTTCAGCCTCCAACCTCCTCCTAACCATCTCCAACGACATCCTGATTGCTGACCCCTATATCGAAGGCCTCCCTTGCGCACAAAAGCGTCGTGCTCTTCTGGCATCTCCTCCAGAAGCGTTCAAATCCTGGGAGTCATATCCGTGTCTAACGCCTTCTTCAG</canonical_amplicon>
		<polymorphic_amplicon>TATCTACACGAAAAGAAGCATGTTCATGGAAAATTGAATGGTAAAGAGTCCTTATAAAGGACCCCCTGCGCCTTTTAATTCAGGATCATTTTCAGCCTCCAACCTCCTCCTAACCATCTCCAACGACATCCTGATTGCTGACCCCTATATCGAAGGCCTCCCTTGCGCACARAAGCGTCGTGCTCTTCTGGCATCTCCTCCAGAAGCGTTCAAATCCTGGGAGTCATATCCGTGTCTAACGCCTTCTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36361</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>26104</contig_pos>
        <strand>+</strand>
        <context>TGTGTTAGAT[A/G]RATTAGGTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAAAAAGCCAGGGCAAGTTTTTATAGTGTTTGTGGTTTGTGTGTTAGAT</left_flank>
        <right_flank>GATTAGGTTTTTTGTGTTGTTTTGGGTCTCTAGGCCTTTTTGAATTTCTA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCAGGTGTATGGCATGAATATCCGTCAGAATGAGCTGCGACTGGTAAGCCATTTTTTGAAAATTTGGAAAGAAAAAATAATTTCAAATTCGTTCTACTGGACTATCCCTGATTTTGGGGTTTTAGTGGTCCAAAAGCAGTCCAAAAGGGCGAATTTGCATTTTGACGTTTTTCGGGGTCAAATTTTCTGTAGATTTCGAATTTTTGCTGTTTTCTGAAGTCAAATTTTCTCTAGATTTCCAAATTTTCACATCGCCGAAATCCTAAACATTCCAATTTGCAGACGGTGGAACTTCGGCAGGTGACCGATGCGGTGGAATGCGTCTTCCATTCTCTCCTATTGCACAGAACATTAGGCAGAGTGAGTCCAAAATCGAATGATCCGAAACGCCCGGTAAAACGCTTTTCCTTTGTTTTCCCAAAAATTTCGAAAAAATTGAAAATTCCAAAAAAGCCAGGGCAAGTTTTTATAGTGTTTGTGGTTTGTGTGTTAGATGGATTAGGTTTTTTGTGTTGTTTTGGGTCTCTAGGCCTTTTTGAATTTCTAGGCCATGTTGAGTTTGTTAGGCCATTTTTAATTTTTAGGTATATTTGGGGGGTTTAGGCCATTTTGGGGTTTCTAGGCCATGTTGGGTTTTCTAGGTCGCAATCGGTTTCTTGGGTCATTTCAGGATTTTCAGAAAATTTTGAGTTTTCTAGGCCATTTCGGGTTTTCTAGGTCATTTTGCCTTGACTTGCTGGCCTAGAATCCGACAAGCTAAGACTTTCTAGGCGATCAGTCTCAAATTGGCCTAGTAACACCAACTAGATTAGGGGTTCCCTTGATTTTGCTGTCGATGGCCTAGAATCCGACAAGCTGAGAATTCTAGATCATCTTCAGGCGATTTTCCAGTTTTAGCCCAACCAGAAGGGAAACTAGTTTTATTATCTCACCTAGAATCCGAAAAGGGGAGATTTCTAGGCCACCAGCTAACTCCAATTGTTTTCAACTTGGCTC</canonical>
            <polymorphic>TTTTTCAGGTGTATGGCATGAATATCCGTCAGAATGAGCTGCGACTGGTAAGCCATTTTTTGAAAATTTGGAAAGAAAAAATAATTTCAAATTCGTTCTACTGGACTATCCCTGATTTTGGGGTTTTAGTGGTCCAAAAGCAGTCCAAAAGGGCGAATTTGCATTTTGACGTTTTTCGGGGTCAAATTTTCTGTAGATTTCGAATTTTTGCTGTTTTCTGAAGTCAAATTTTCTCTAGATTTCCAAATTTTCACATCGCCGAAATCCTAAACATTCCAATTTGCAGACGGTGGAACTTCGGCAGGTGACCGATGCGGTGGAATGCGTCTTCCATTCTCTCCTATTGCACAGAACATTAGGCAGAGTGAGTCCAAAATCGAATGATCCGAAACGCCCGGTAAAACGCTTTTCCTTTGTTTTCCCAAAAATTTCGAAAAAATTGAAAATTCCAAAAAAGCCAGGGCAAGTTTTTATAGTGTTTGTGGTTTGTGTGTTAGATRGATTAGGTTTTTTGTGTTGTTTTGGGTCTCTAGGCCTTTTTGAATTTCTAGGCCATGTTGAGTTTGTTAGGCCATTTTTAATTTTTAGGTATATTTGGGGGGTTTAGGCCATTTTGGGGTTTCTAGGCCATGTTGGGTTTTCTAGGTCGCAATCGGTTTCTTGGGTCATTTCAGGATTTTCAGAAAATTTTGAGTTTTCTAGGCCATTTCGGGTTTTCTAGGTCATTTTGCCTTGACTTGCTGGCCTAGAATCCGACAAGCTAAGACTTTCTAGGCGATCAGTCTCAAATTGGCCTAGTAACACCAACTAGATTAGGGGTTCCCTTGATTTTGCTGTCGATGGCCTAGAATCCGACAAGCTGAGAATTCTAGATCATCTTCAGGCGATTTTCCAGTTTTAGCCCAACCAGAAGGGAAACTAGTTTTATTATCTCACCTAGAATCCGAAAAGGGGAGATTTCTAGGCCACCAGCTAACTCCAATTGTTTTCAACTTGGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTTTGTTTTCCCAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGTCTTAGCTTGTCGGATTCTA</pcr_primer_p2>
		<pcr_amplicon_size>359</pcr_amplicon_size>
		<canonical_amplicon>TCCTTTGTTTTCCCAAAAATTTCGAAAAAATTGAAAATTCCAAAAAAGCCAGGGCAAGTTTTTATAGTGTTTGTGGTTTGTGTGTTAGATGGATTAGGTTTTTTGTGTTGTTTTGGGTCTCTAGGCCTTTTTGAATTTCTAGGCCATGTTGAGTTTGTTAGGCCATTTTTAATTTTTAGGTATATTTGGGGGGTTTAGGCCATTTTGGGGTTTCTAGGCCATGTTGGGTTTTCTAGGTCGCAATCGGTTTCTTGGGTCATTTCAGGATTTTCAGAAAATTTTGAGTTTTCTAGGCCATTTCGGGTTTTCTAGGTCATTTTGCCTTGACTTGCTGGCCTAGAATCCGACAAGCTAAGACT</canonical_amplicon>
		<polymorphic_amplicon>TCCTTTGTTTTCCCAAAAATTTCGAAAAAATTGAAAATTCCAAAAAAGCCAGGGCAAGTTTTTATAGTGTTTGTGGTTTGTGTGTTAGATRGATTAGGTTTTTTGTGTTGTTTTGGGTCTCTAGGCCTTTTTGAATTTCTAGGCCATGTTGAGTTTGTTAGGCCATTTTTAATTTTTAGGTATATTTGGGGGGTTTAGGCCATTTTGGGGTTTCTAGGCCATGTTGGGTTTTCTAGGTCGCAATCGGTTTCTTGGGTCATTTCAGGATTTTCAGAAAATTTTGAGTTTTCTAGGCCATTTCGGGTTTTCTAGGTCATTTTGCCTTGACTTGCTGGCCTAGAATCCGACAAGCTAAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36362</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>26105</contig_pos>
        <strand>+</strand>
        <context>GTGTTAGATR[A/G]ATTAGGTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAAGCCAGGGCAAGTTTTTATAGTGTTTGTGGTTTGTGTGTTAGATG</left_flank>
        <right_flank>ATTAGGTTTTTTGTGTTGTTTTGGGTCTCTAGGCCTTTTTGAATTTCTAG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCAGGTGTATGGCATGAATATCCGTCAGAATGAGCTGCGACTGGTAAGCCATTTTTTGAAAATTTGGAAAGAAAAAATAATTTCAAATTCGTTCTACTGGACTATCCCTGATTTTGGGGTTTTAGTGGTCCAAAAGCAGTCCAAAAGGGCGAATTTGCATTTTGACGTTTTTCGGGGTCAAATTTTCTGTAGATTTCGAATTTTTGCTGTTTTCTGAAGTCAAATTTTCTCTAGATTTCCAAATTTTCACATCGCCGAAATCCTAAACATTCCAATTTGCAGACGGTGGAACTTCGGCAGGTGACCGATGCGGTGGAATGCGTCTTCCATTCTCTCCTATTGCACAGAACATTAGGCAGAGTGAGTCCAAAATCGAATGATCCGAAACGCCCGGTAAAACGCTTTTCCTTTGTTTTCCCAAAAATTTCGAAAAAATTGAAAATTCCAAAAAAGCCAGGGCAAGTTTTTATAGTGTTTGTGGTTTGTGTGTTAGATGGATTAGGTTTTTTGTGTTGTTTTGGGTCTCTAGGCCTTTTTGAATTTCTAGGCCATGTTGAGTTTGTTAGGCCATTTTTAATTTTTAGGTATATTTGGGGGGTTTAGGCCATTTTGGGGTTTCTAGGCCATGTTGGGTTTTCTAGGTCGCAATCGGTTTCTTGGGTCATTTCAGGATTTTCAGAAAATTTTGAGTTTTCTAGGCCATTTCGGGTTTTCTAGGTCATTTTGCCTTGACTTGCTGGCCTAGAATCCGACAAGCTAAGACTTTCTAGGCGATCAGTCTCAAATTGGCCTAGTAACACCAACTAGATTAGGGGTTCCCTTGATTTTGCTGTCGATGGCCTAGAATCCGACAAGCTGAGAATTCTAGATCATCTTCAGGCGATTTTCCAGTTTTAGCCCAACCAGAAGGGAAACTAGTTTTATTATCTCACCTAGAATCCGAAAAGGGGAGATTTCTAGGCCACCAGCTAACTCCAATTGTTTTCAACTTGGCTCC</canonical>
            <polymorphic>TTTTCAGGTGTATGGCATGAATATCCGTCAGAATGAGCTGCGACTGGTAAGCCATTTTTTGAAAATTTGGAAAGAAAAAATAATTTCAAATTCGTTCTACTGGACTATCCCTGATTTTGGGGTTTTAGTGGTCCAAAAGCAGTCCAAAAGGGCGAATTTGCATTTTGACGTTTTTCGGGGTCAAATTTTCTGTAGATTTCGAATTTTTGCTGTTTTCTGAAGTCAAATTTTCTCTAGATTTCCAAATTTTCACATCGCCGAAATCCTAAACATTCCAATTTGCAGACGGTGGAACTTCGGCAGGTGACCGATGCGGTGGAATGCGTCTTCCATTCTCTCCTATTGCACAGAACATTAGGCAGAGTGAGTCCAAAATCGAATGATCCGAAACGCCCGGTAAAACGCTTTTCCTTTGTTTTCCCAAAAATTTCGAAAAAATTGAAAATTCCAAAAAAGCCAGGGCAAGTTTTTATAGTGTTTGTGGTTTGTGTGTTAGATGRATTAGGTTTTTTGTGTTGTTTTGGGTCTCTAGGCCTTTTTGAATTTCTAGGCCATGTTGAGTTTGTTAGGCCATTTTTAATTTTTAGGTATATTTGGGGGGTTTAGGCCATTTTGGGGTTTCTAGGCCATGTTGGGTTTTCTAGGTCGCAATCGGTTTCTTGGGTCATTTCAGGATTTTCAGAAAATTTTGAGTTTTCTAGGCCATTTCGGGTTTTCTAGGTCATTTTGCCTTGACTTGCTGGCCTAGAATCCGACAAGCTAAGACTTTCTAGGCGATCAGTCTCAAATTGGCCTAGTAACACCAACTAGATTAGGGGTTCCCTTGATTTTGCTGTCGATGGCCTAGAATCCGACAAGCTGAGAATTCTAGATCATCTTCAGGCGATTTTCCAGTTTTAGCCCAACCAGAAGGGAAACTAGTTTTATTATCTCACCTAGAATCCGAAAAGGGGAGATTTCTAGGCCACCAGCTAACTCCAATTGTTTTCAACTTGGCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTTTGTTTTCCCAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGTCTTAGCTTGTCGGATTCTA</pcr_primer_p2>
		<pcr_amplicon_size>359</pcr_amplicon_size>
		<canonical_amplicon>TCCTTTGTTTTCCCAAAAATTTCGAAAAAATTGAAAATTCCAAAAAAGCCAGGGCAAGTTTTTATAGTGTTTGTGGTTTGTGTGTTAGATGGATTAGGTTTTTTGTGTTGTTTTGGGTCTCTAGGCCTTTTTGAATTTCTAGGCCATGTTGAGTTTGTTAGGCCATTTTTAATTTTTAGGTATATTTGGGGGGTTTAGGCCATTTTGGGGTTTCTAGGCCATGTTGGGTTTTCTAGGTCGCAATCGGTTTCTTGGGTCATTTCAGGATTTTCAGAAAATTTTGAGTTTTCTAGGCCATTTCGGGTTTTCTAGGTCATTTTGCCTTGACTTGCTGGCCTAGAATCCGACAAGCTAAGACT</canonical_amplicon>
		<polymorphic_amplicon>TCCTTTGTTTTCCCAAAAATTTCGAAAAAATTGAAAATTCCAAAAAAGCCAGGGCAAGTTTTTATAGTGTTTGTGGTTTGTGTGTTAGATGRATTAGGTTTTTTGTGTTGTTTTGGGTCTCTAGGCCTTTTTGAATTTCTAGGCCATGTTGAGTTTGTTAGGCCATTTTTAATTTTTAGGTATATTTGGGGGGTTTAGGCCATTTTGGGGTTTCTAGGCCATGTTGGGTTTTCTAGGTCGCAATCGGTTTCTTGGGTCATTTCAGGATTTTCAGAAAATTTTGAGTTTTCTAGGCCATTTCGGGTTTTCTAGGTCATTTTGCCTTGACTTGCTGGCCTAGAATCCGACAAGCTAAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36363</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>26209</contig_pos>
        <strand></strand>
        <context>ttggggggtt[T/G]aggccatttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATGTTGAGTTTGTTAGGCCATTTTTAATTTTTAGGTATATTTGGGGGGTT</left_flank>
        <right_flank>AGGCCATTTTGGGGTTTCTAGGCCATGTTGGGTTTTCTAGGTCGCAATCG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATCCCTGATTTTGGGGTTTTAGTGGTCCAAAAGCAGTCCAAAAGGGCGAATTTGCATTTTGACGTTTTTCGGGGTCAAATTTTCTGTAGATTTCGAATTTTTGCTGTTTTCTGAAGTCAAATTTTCTCTAGATTTCCAAATTTTCACATCGCCGAAATCCTAAACATTCCAATTTGCAGACGGTGGAACTTCGGCAGGTGACCGATGCGGTGGAATGCGTCTTCCATTCTCTCCTATTGCACAGAACATTAGGCAGAGTGAGTCCAAAATCGAATGATCCGAAACGCCCGGTAAAACGCTTTTCCTTTGTTTTCCCAAAAATTTCGAAAAAATTGAAAATTCCAAAAAAGCCAGGGCAAGTTTTTATAGTGTTTGTGGTTTGTGTGTTAGATGGATTAGGTTTTTTGTGTTGTTTTGGGTCTCTAGGCCTTTTTGAATTTCTAGGCCATGTTGAGTTTGTTAGGCCATTTTTAATTTTTAGGTATATTTGGGGGGTTTAGGCCATTTTGGGGTTTCTAGGCCATGTTGGGTTTTCTAGGTCGCAATCGGTTTCTTGGGTCATTTCAGGATTTTCAGAAAATTTTGAGTTTTCTAGGCCATTTCGGGTTTTCTAGGTCATTTTGCCTTGACTTGCTGGCCTAGAATCCGACAAGCTAAGACTTTCTAGGCGATCAGTCTCAAATTGGCCTAGTAACACCAACTAGATTAGGGGTTCCCTTGATTTTGCTGTCGATGGCCTAGAATCCGACAAGCTGAGAATTCTAGATCATCTTCAGGCGATTTTCCAGTTTTAGCCCAACCAGAAGGGAAACTAGTTTTATTATCTCACCTAGAATCCGAAAAGGGGAGATTTCTAGGCCACCAGCTAACTCCAATTGTTTTCAACTTGGCTCCTAATGGCCTAGCTTTCCGCATTTTTCTAGGCCACCAGCTTTGTCAAATTCCTCGGAAGGTTAGAATCACGATATTTGAGTTCCATGACCTAGTTTTCCAGATTT</canonical>
            <polymorphic>CTATCCCTGATTTTGGGGTTTTAGTGGTCCAAAAGCAGTCCAAAAGGGCGAATTTGCATTTTGACGTTTTTCGGGGTCAAATTTTCTGTAGATTTCGAATTTTTGCTGTTTTCTGAAGTCAAATTTTCTCTAGATTTCCAAATTTTCACATCGCCGAAATCCTAAACATTCCAATTTGCAGACGGTGGAACTTCGGCAGGTGACCGATGCGGTGGAATGCGTCTTCCATTCTCTCCTATTGCACAGAACATTAGGCAGAGTGAGTCCAAAATCGAATGATCCGAAACGCCCGGTAAAACGCTTTTCCTTTGTTTTCCCAAAAATTTCGAAAAAATTGAAAATTCCAAAAAAGCCAGGGCAAGTTTTTATAGTGTTTGTGGTTTGTGTGTTAGATGGATTAGGTTTTTTGTGTTGTTTTGGGTCTCTAGGCCTTTTTGAATTTCTAGGCCATGTTGAGTTTGTTAGGCCATTTTTAATTTTTAGGTATATTTGGGGGGTTKAGGCCATTTTGGGGTTTCTAGGCCATGTTGGGTTTTCTAGGTCGCAATCGGTTTCTTGGGTCATTTCAGGATTTTCAGAAAATTTTGAGTTTTCTAGGCCATTTCGGGTTTTCTAGGTCATTTTGCCTTGACTTGCTGGCCTAGAATCCGACAAGCTAAGACTTTCTAGGCGATCAGTCTCAAATTGGCCTAGTAACACCAACTAGATTAGGGGTTCCCTTGATTTTGCTGTCGATGGCCTAGAATCCGACAAGCTGAGAATTCTAGATCATCTTCAGGCGATTTTCCAGTTTTAGCCCAACCAGAAGGGAAACTAGTTTTATTATCTCACCTAGAATCCGAAAAGGGGAGATTTCTAGGCCACCAGCTAACTCCAATTGTTTTCAACTTGGCTCCTAATGGCCTAGCTTTCCGCATTTTTCTAGGCCACCAGCTTTGTCAAATTCCTCGGAAGGTTAGAATCACGATATTTGAGTTCCATGACCTAGTTTTCCAGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTGTTTTGGGTCTCTAGG</pcr_primer_p1>
		<pcr_primer_p2>CTTAGCTTGTCGGATTCTAGG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGTTGTTTTGGGTCTCTAGGCCTTTTTGAATTTCTAGGCCATGTTGAGTTTGTTAGGCCATTTTTAATTTTTAGGTATATTTGGGGGGTTTAGGCCATTTTGGGGTTTCTAGGCCATGTTGGGTTTTCTAGGTCGCAATCGGTTTCTTGGGTCATTTCAGGATTTTCAGAAAATTTTGAGTTTTCTAGGCCATTTCGGGTTTTCTAGGTCATTTTGCCTTGACTTGCTGGCCTAGAATCCGACAAGCTAAG</canonical_amplicon>
		<polymorphic_amplicon>TGTTGTTTTGGGTCTCTAGGCCTTTTTGAATTTCTAGGCCATGTTGAGTTTGTTAGGCCATTTTTAATTTTTAGGTATATTTGGGGGGTTKAGGCCATTTTGGGGTTTCTAGGCCATGTTGGGTTTTCTAGGTCGCAATCGGTTTCTTGGGTCATTTCAGGATTTTCAGAAAATTTTGAGTTTTCTAGGCCATTTCGGGTTTTCTAGGTCATTTTGCCTTGACTTGCTGGCCTAGAATCCGACAAGCTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36364</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>26267</contig_pos>
        <strand></strand>
        <context>tcggtttctt[G/A]ggtcatttca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTGGGGTTTCTAGGCCATGTTGGGTTTTCTAGGTCGCAATCGGTTTCTT</left_flank>
        <right_flank>GGTCATTTCAGGATTTTCAGAAAATTTTGAGTTTTCTAGGCCATTTCGGG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGACGTTTTTCGGGGTCAAATTTTCTGTAGATTTCGAATTTTTGCTGTTTTCTGAAGTCAAATTTTCTCTAGATTTCCAAATTTTCACATCGCCGAAATCCTAAACATTCCAATTTGCAGACGGTGGAACTTCGGCAGGTGACCGATGCGGTGGAATGCGTCTTCCATTCTCTCCTATTGCACAGAACATTAGGCAGAGTGAGTCCAAAATCGAATGATCCGAAACGCCCGGTAAAACGCTTTTCCTTTGTTTTCCCAAAAATTTCGAAAAAATTGAAAATTCCAAAAAAGCCAGGGCAAGTTTTTATAGTGTTTGTGGTTTGTGTGTTAGATGGATTAGGTTTTTTGTGTTGTTTTGGGTCTCTAGGCCTTTTTGAATTTCTAGGCCATGTTGAGTTTGTTAGGCCATTTTTAATTTTTAGGTATATTTGGGGGGTTTAGGCCATTTTGGGGTTTCTAGGCCATGTTGGGTTTTCTAGGTCGCAATCGGTTTCTTGGGTCATTTCAGGATTTTCAGAAAATTTTGAGTTTTCTAGGCCATTTCGGGTTTTCTAGGTCATTTTGCCTTGACTTGCTGGCCTAGAATCCGACAAGCTAAGACTTTCTAGGCGATCAGTCTCAAATTGGCCTAGTAACACCAACTAGATTAGGGGTTCCCTTGATTTTGCTGTCGATGGCCTAGAATCCGACAAGCTGAGAATTCTAGATCATCTTCAGGCGATTTTCCAGTTTTAGCCCAACCAGAAGGGAAACTAGTTTTATTATCTCACCTAGAATCCGAAAAGGGGAGATTTCTAGGCCACCAGCTAACTCCAATTGTTTTCAACTTGGCTCCTAATGGCCTAGCTTTCCGCATTTTTCTAGGCCACCAGCTTTGTCAAATTCCTCGGAAGGTTAGAATCACGATATTTGAGTTCCATGACCTAGTTTTCCAGATTTTTGGGTTTCTAGGCCACCATAGATTCGGTTCAAAGCACACATTTGTATAATGCAAAAT</canonical>
            <polymorphic>TTTTGACGTTTTTCGGGGTCAAATTTTCTGTAGATTTCGAATTTTTGCTGTTTTCTGAAGTCAAATTTTCTCTAGATTTCCAAATTTTCACATCGCCGAAATCCTAAACATTCCAATTTGCAGACGGTGGAACTTCGGCAGGTGACCGATGCGGTGGAATGCGTCTTCCATTCTCTCCTATTGCACAGAACATTAGGCAGAGTGAGTCCAAAATCGAATGATCCGAAACGCCCGGTAAAACGCTTTTCCTTTGTTTTCCCAAAAATTTCGAAAAAATTGAAAATTCCAAAAAAGCCAGGGCAAGTTTTTATAGTGTTTGTGGTTTGTGTGTTAGATGGATTAGGTTTTTTGTGTTGTTTTGGGTCTCTAGGCCTTTTTGAATTTCTAGGCCATGTTGAGTTTGTTAGGCCATTTTTAATTTTTAGGTATATTTGGGGGGTTTAGGCCATTTTGGGGTTTCTAGGCCATGTTGGGTTTTCTAGGTCGCAATCGGTTTCTTRGGTCATTTCAGGATTTTCAGAAAATTTTGAGTTTTCTAGGCCATTTCGGGTTTTCTAGGTCATTTTGCCTTGACTTGCTGGCCTAGAATCCGACAAGCTAAGACTTTCTAGGCGATCAGTCTCAAATTGGCCTAGTAACACCAACTAGATTAGGGGTTCCCTTGATTTTGCTGTCGATGGCCTAGAATCCGACAAGCTGAGAATTCTAGATCATCTTCAGGCGATTTTCCAGTTTTAGCCCAACCAGAAGGGAAACTAGTTTTATTATCTCACCTAGAATCCGAAAAGGGGAGATTTCTAGGCCACCAGCTAACTCCAATTGTTTTCAACTTGGCTCCTAATGGCCTAGCTTTCCGCATTTTTCTAGGCCACCAGCTTTGTCAAATTCCTCGGAAGGTTAGAATCACGATATTTGAGTTCCATGACCTAGTTTTCCAGATTTTTGGGTTTCTAGGCCACCATAGATTCGGTTCAAAGCACACATTTGTATAATGCAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTGTTTTGGGTCTCTAGG</pcr_primer_p1>
		<pcr_primer_p2>CTTAGCTTGTCGGATTCTAGG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGTTGTTTTGGGTCTCTAGGCCTTTTTGAATTTCTAGGCCATGTTGAGTTTGTTAGGCCATTTTTAATTTTTAGGTATATTTGGGGGGTTTAGGCCATTTTGGGGTTTCTAGGCCATGTTGGGTTTTCTAGGTCGCAATCGGTTTCTTGGGTCATTTCAGGATTTTCAGAAAATTTTGAGTTTTCTAGGCCATTTCGGGTTTTCTAGGTCATTTTGCCTTGACTTGCTGGCCTAGAATCCGACAAGCTAAG</canonical_amplicon>
		<polymorphic_amplicon>TGTTGTTTTGGGTCTCTAGGCCTTTTTGAATTTCTAGGCCATGTTGAGTTTGTTAGGCCATTTTTAATTTTTAGGTATATTTGGGGGGTTTAGGCCATTTTGGGGTTTCTAGGCCATGTTGGGTTTTCTAGGTCGCAATCGGTTTCTTRGGTCATTTCAGGATTTTCAGAAAATTTTGAGTTTTCTAGGCCATTTCGGGTTTTCTAGGTCATTTTGCCTTGACTTGCTGGCCTAGAATCCGACAAGCTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36365</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>26505</contig_pos>
        <strand>+</strand>
        <context>TCCAGTTTTA[A/G]CCCAACCAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCGACAAGCTGAGAATTCTAGATCATCTTCAGGCGATTTTCCAGTTTTA</left_flank>
        <right_flank>CCCAACCAGAAGGGAAACTAGTTTTATTATCTCACCTAGAATCCGAAAAG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACGCTTTTCCTTTGTTTTCCCAAAAATTTCGAAAAAATTGAAAATTCCAAAAAAGCCAGGGCAAGTTTTTATAGTGTTTGTGGTTTGTGTGTTAGATGGATTAGGTTTTTTGTGTTGTTTTGGGTCTCTAGGCCTTTTTGAATTTCTAGGCCATGTTGAGTTTGTTAGGCCATTTTTAATTTTTAGGTATATTTGGGGGGTTTAGGCCATTTTGGGGTTTCTAGGCCATGTTGGGTTTTCTAGGTCGCAATCGGTTTCTTGGGTCATTTCAGGATTTTCAGAAAATTTTGAGTTTTCTAGGCCATTTCGGGTTTTCTAGGTCATTTTGCCTTGACTTGCTGGCCTAGAATCCGACAAGCTAAGACTTTCTAGGCGATCAGTCTCAAATTGGCCTAGTAACACCAACTAGATTAGGGGTTCCCTTGATTTTGCTGTCGATGGCCTAGAATCCGACAAGCTGAGAATTCTAGATCATCTTCAGGCGATTTTCCAGTTTTAGCCCAACCAGAAGGGAAACTAGTTTTATTATCTCACCTAGAATCCGAAAAGGGGAGATTTCTAGGCCACCAGCTAACTCCAATTGTTTTCAACTTGGCTCCTAATGGCCTAGCTTTCCGCATTTTTCTAGGCCACCAGCTTTGTCAAATTCCTCGGAAGGTTAGAATCACGATATTTGAGTTCCATGACCTAGTTTTCCAGATTTTTGGGTTTCTAGGCCACCATAGATTCGGTTCAAAGCACACATTTGTATAATGCAAAATGCATCTCTCTCCTCCAGCAATCACTGTGCTTAATTTGATAAGATAACATATTACATAAAAAATAATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTATCTATCTCTCCAACATCATAAGAGAGGAGTCCCGTGCCATTGGAAAAGAAGAAGACTGTGTTGATTCTTCCATATGACCCCGACGAGAGACTGAGAAAGTGGGAAGAGAAGAGAGACGCA</canonical>
            <polymorphic>AACGCTTTTCCTTTGTTTTCCCAAAAATTTCGAAAAAATTGAAAATTCCAAAAAAGCCAGGGCAAGTTTTTATAGTGTTTGTGGTTTGTGTGTTAGATGGATTAGGTTTTTTGTGTTGTTTTGGGTCTCTAGGCCTTTTTGAATTTCTAGGCCATGTTGAGTTTGTTAGGCCATTTTTAATTTTTAGGTATATTTGGGGGGTTTAGGCCATTTTGGGGTTTCTAGGCCATGTTGGGTTTTCTAGGTCGCAATCGGTTTCTTGGGTCATTTCAGGATTTTCAGAAAATTTTGAGTTTTCTAGGCCATTTCGGGTTTTCTAGGTCATTTTGCCTTGACTTGCTGGCCTAGAATCCGACAAGCTAAGACTTTCTAGGCGATCAGTCTCAAATTGGCCTAGTAACACCAACTAGATTAGGGGTTCCCTTGATTTTGCTGTCGATGGCCTAGAATCCGACAAGCTGAGAATTCTAGATCATCTTCAGGCGATTTTCCAGTTTTARCCCAACCAGAAGGGAAACTAGTTTTATTATCTCACCTAGAATCCGAAAAGGGGAGATTTCTAGGCCACCAGCTAACTCCAATTGTTTTCAACTTGGCTCCTAATGGCCTAGCTTTCCGCATTTTTCTAGGCCACCAGCTTTGTCAAATTCCTCGGAAGGTTAGAATCACGATATTTGAGTTCCATGACCTAGTTTTCCAGATTTTTGGGTTTCTAGGCCACCATAGATTCGGTTCAAAGCACACATTTGTATAATGCAAAATGCATCTCTCTCCTCCAGCAATCACTGTGCTTAATTTGATAAGATAACATATTACATAAAAAATAATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTATCTATCTCTCCAACATCATAAGAGAGGAGTCCCGTGCCATTGGAAAAGAAGAAGACTGTGTTGATTCTTCCATATGACCCCGACGAGAGACTGAGAAAGTGGGAAGAGAAGAGAGACGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>283 80 77 76 64 56 50 42 41 37 33 25 19 19 19 18 16 16 10 7 7 5</canonical_bands>
                <polymorphic_bands>283 106 80 77 76 56 50 41 37 33 25 19 19 19 18 16 16 10 7 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGAATCCGACAAGCTAAGACT</pcr_primer_p1>
		<pcr_primer_p2>AAGTTGAAAACAATTGGAGTTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAGAATCCGACAAGCTAAGACTTTCTAGGCGATCAGTCTCAAATTGGCCTAGTAACACCAACTAGATTAGGGGTTCCCTTGATTTTGCTGTCGATGGCCTAGAATCCGACAAGCTGAGAATTCTAGATCATCTTCAGGCGATTTTCCAGTTTTAGCCCAACCAGAAGGGAAACTAGTTTTATTATCTCACCTAGAATCCGAAAAGGGGAGATTTCTAGGCCACCAGCTAACTCCAATTGTTTTCAACTT</canonical_amplicon>
		<polymorphic_amplicon>CTAGAATCCGACAAGCTAAGACTTTCTAGGCGATCAGTCTCAAATTGGCCTAGTAACACCAACTAGATTAGGGGTTCCCTTGATTTTGCTGTCGATGGCCTAGAATCCGACAAGCTGAGAATTCTAGATCATCTTCAGGCGATTTTCCAGTTTTARCCCAACCAGAAGGGAAACTAGTTTTATTATCTCACCTAGAATCCGAAAAGGGGAGATTTCTAGGCCACCAGCTAACTCCAATTGTTTTCAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36366</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>43068</contig_pos>
        <strand></strand>
        <context>ctttaaaggc[A/G]catatctcaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGTTTCGGTAGATTTCACTCTCCAAGTGTGCCTTTGTTTCTTTAAAGGC</left_flank>
        <right_flank>CATATCTCAAAAACCAGAAAAGCTAATTGAAATTTGAAAAATACCAAAAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTAATTGGTAATTGTCAATGGAGAGAATTCGCATTAATTAAAATAATAATTTCAGAACTAATAATTGCAAACAGTAGTACTGGGACCGGAAATTCAGTGCTCTAATTAAATAAATGATTTTTAAGAAGTTGTTCTTGTATAATTGTTTATATATCAAAAACTAAAAATGCTATCGAAAAGTAATTAACTACAATATTGCTCAGCATAAAATTTTACACATTTTGTTAGTTTACAAATTTTCGATTGGTCCTCTGGTTAGTGAGATATGCGCCTTTAAAGAGACACAGGCTATTCTGCGTCCTTTCACGTGGAGAGAGAGAGAGAGAGAGAGAGGGTAGAGACGCAGAGAAACCCATGATATAATTGAAACAACAACAAAAACGTCTTGTTTTACAGATAAGCAGTCAGCATACTTCAGTTATCTTTTTTCACCTCTTTCGAAATTCGTTAGTTTCGGTAGATTTCACTCTCCAAGTGTGCCTTTGTTTCTTTAAAGGCACATATCTCAAAAACCAGAAAAGCTAATTGAAATTTGAAAAATACCAAAATGAAGAACATGAAATTTCCTACATTTTCGTAATTTACAACTTTTTGATAGCCTTCTTAGTTCTCGAGATATGCGCCTTTAAACCATACCTCTCTTCAGAATGTCCACCGGTCACGCCTACCAATGGCTTACCGAGTCTCAGAAGGCTAATATTCTGGAAGTATTCTTTTCCTACGAATTCAACCATTATTTTATAAAACTAGAACTCCCGAATGGCTTTTTACATTTCGACTATAACTATGAATATGGATCTACCGTAGTGAGCTATGAGCGAGAGAAGTTATTGGTTGAAAAAGAATTGGCTAAAGTGTTTTTGGATGATCTGGAATTAATTTTGAAGAATCAAAAATTGAAATTAGGACAGTTACATATGCAAGTGATGCCTAACATCTTCCAAGAACATTATCAAGGACTCCAAGAAACTCTTAATACCATTTTTGAAAGACTAGAAG</canonical>
            <polymorphic>ACTAATTGGTAATTGTCAATGGAGAGAATTCGCATTAATTAAAATAATAATTTCAGAACTAATAATTGCAAACAGTAGTACTGGGACCGGAAATTCAGTGCTCTAATTAAATAAATGATTTTTAAGAAGTTGTTCTTGTATAATTGTTTATATATCAAAAACTAAAAATGCTATCGAAAAGTAATTAACTACAATATTGCTCAGCATAAAATTTTACACATTTTGTTAGTTTACAAATTTTCGATTGGTCCTCTGGTTAGTGAGATATGCGCCTTTAAAGAGACACAGGCTATTCTGCGTCCTTTCACGTGGAGAGAGAGAGAGAGAGAGAGAGGGTAGAGACGCAGAGAAACCCATGATATAATTGAAACAACAACAAAAACGTCTTGTTTTACAGATAAGCAGTCAGCATACTTCAGTTATCTTTTTTCACCTCTTTCGAAATTCGTTAGTTTCGGTAGATTTCACTCTCCAAGTGTGCCTTTGTTTCTTTAAAGGCRCATATCTCAAAAACCAGAAAAGCTAATTGAAATTTGAAAAATACCAAAATGAAGAACATGAAATTTCCTACATTTTCGTAATTTACAACTTTTTGATAGCCTTCTTAGTTCTCGAGATATGCGCCTTTAAACCATACCTCTCTTCAGAATGTCCACCGGTCACGCCTACCAATGGCTTACCGAGTCTCAGAAGGCTAATATTCTGGAAGTATTCTTTTCCTACGAATTCAACCATTATTTTATAAAACTAGAACTCCCGAATGGCTTTTTACATTTCGACTATAACTATGAATATGGATCTACCGTAGTGAGCTATGAGCGAGAGAAGTTATTGGTTGAAAAAGAATTGGCTAAAGTGTTTTTGGATGATCTGGAATTAATTTTGAAGAATCAAAAATTGAAATTAGGACAGTTACATATGCAAGTGATGCCTAACATCTTCCAAGAACATTATCAAGGACTCCAAGAAACTCTTAATACCATTTTTGAAAGACTAGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>155 148 121 118 100 73 69 48 44 35 23 22 20 11 7 4 2</canonical_bands>
                <polymorphic_bands>175 148 121 118 100 73 69 48 44 35 23 22 11 7 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAGTCAGCATACTTCAGTTATC</pcr_primer_p1>
		<pcr_primer_p2>GACATTCTGAAGAGAGGTATGG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCAGTCAGCATACTTCAGTTATCTTTTTTCACCTCTTTCGAAATTCGTTAGTTTCGGTAGATTTCACTCTCCAAGTGTGCCTTTGTTTCTTTAAAGGCACATATCTCAAAAACCAGAAAAGCTAATTGAAATTTGAAAAATACCAAAATGAAGAACATGAAATTTCCTACATTTTCGTAATTTACAACTTTTTGATAGCCTTCTTAGTTCTCGAGATATGCGCCTTTAAACCATACCTCTCTTCAGAATGTC</canonical_amplicon>
		<polymorphic_amplicon>GCAGTCAGCATACTTCAGTTATCTTTTTTCACCTCTTTCGAAATTCGTTAGTTTCGGTAGATTTCACTCTCCAAGTGTGCCTTTGTTTCTTTAAAGGCRCATATCTCAAAAACCAGAAAAGCTAATTGAAATTTGAAAAATACCAAAATGAAGAACATGAAATTTCCTACATTTTCGTAATTTACAACTTTTTGATAGCCTTCTTAGTTCTCGAGATATGCGCCTTTAAACCATACCTCTCTTCAGAATGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36367</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>43085</contig_pos>
        <strand></strand>
        <context>tcaaaaacca[G/A]aaaagctaat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACTCTCCAAGTGTGCCTTTGTTTCTTTAAAGGCACATATCTCAAAAACCA</left_flank>
        <right_flank>AAAAGCTAATTGAAATTTGAAAAATACCAAAATGAAGAACATGAAATTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGGAGAGAATTCGCATTAATTAAAATAATAATTTCAGAACTAATAATTGCAAACAGTAGTACTGGGACCGGAAATTCAGTGCTCTAATTAAATAAATGATTTTTAAGAAGTTGTTCTTGTATAATTGTTTATATATCAAAAACTAAAAATGCTATCGAAAAGTAATTAACTACAATATTGCTCAGCATAAAATTTTACACATTTTGTTAGTTTACAAATTTTCGATTGGTCCTCTGGTTAGTGAGATATGCGCCTTTAAAGAGACACAGGCTATTCTGCGTCCTTTCACGTGGAGAGAGAGAGAGAGAGAGAGAGGGTAGAGACGCAGAGAAACCCATGATATAATTGAAACAACAACAAAAACGTCTTGTTTTACAGATAAGCAGTCAGCATACTTCAGTTATCTTTTTTCACCTCTTTCGAAATTCGTTAGTTTCGGTAGATTTCACTCTCCAAGTGTGCCTTTGTTTCTTTAAAGGCACATATCTCAAAAACCAGAAAAGCTAATTGAAATTTGAAAAATACCAAAATGAAGAACATGAAATTTCCTACATTTTCGTAATTTACAACTTTTTGATAGCCTTCTTAGTTCTCGAGATATGCGCCTTTAAACCATACCTCTCTTCAGAATGTCCACCGGTCACGCCTACCAATGGCTTACCGAGTCTCAGAAGGCTAATATTCTGGAAGTATTCTTTTCCTACGAATTCAACCATTATTTTATAAAACTAGAACTCCCGAATGGCTTTTTACATTTCGACTATAACTATGAATATGGATCTACCGTAGTGAGCTATGAGCGAGAGAAGTTATTGGTTGAAAAAGAATTGGCTAAAGTGTTTTTGGATGATCTGGAATTAATTTTGAAGAATCAAAAATTGAAATTAGGACAGTTACATATGCAAGTGATGCCTAACATCTTCCAAGAACATTATCAAGGACTCCAAGAAACTCTTAATACCATTTTTGAAAGACTAGAAGAGATTTTGACGCAGAGA</canonical>
            <polymorphic>AATGGAGAGAATTCGCATTAATTAAAATAATAATTTCAGAACTAATAATTGCAAACAGTAGTACTGGGACCGGAAATTCAGTGCTCTAATTAAATAAATGATTTTTAAGAAGTTGTTCTTGTATAATTGTTTATATATCAAAAACTAAAAATGCTATCGAAAAGTAATTAACTACAATATTGCTCAGCATAAAATTTTACACATTTTGTTAGTTTACAAATTTTCGATTGGTCCTCTGGTTAGTGAGATATGCGCCTTTAAAGAGACACAGGCTATTCTGCGTCCTTTCACGTGGAGAGAGAGAGAGAGAGAGAGAGGGTAGAGACGCAGAGAAACCCATGATATAATTGAAACAACAACAAAAACGTCTTGTTTTACAGATAAGCAGTCAGCATACTTCAGTTATCTTTTTTCACCTCTTTCGAAATTCGTTAGTTTCGGTAGATTTCACTCTCCAAGTGTGCCTTTGTTTCTTTAAAGGCACATATCTCAAAAACCARAAAAGCTAATTGAAATTTGAAAAATACCAAAATGAAGAACATGAAATTTCCTACATTTTCGTAATTTACAACTTTTTGATAGCCTTCTTAGTTCTCGAGATATGCGCCTTTAAACCATACCTCTCTTCAGAATGTCCACCGGTCACGCCTACCAATGGCTTACCGAGTCTCAGAAGGCTAATATTCTGGAAGTATTCTTTTCCTACGAATTCAACCATTATTTTATAAAACTAGAACTCCCGAATGGCTTTTTACATTTCGACTATAACTATGAATATGGATCTACCGTAGTGAGCTATGAGCGAGAGAAGTTATTGGTTGAAAAAGAATTGGCTAAAGTGTTTTTGGATGATCTGGAATTAATTTTGAAGAATCAAAAATTGAAATTAGGACAGTTACATATGCAAGTGATGCCTAACATCTTCCAAGAACATTATCAAGGACTCCAAGAAACTCTTAATACCATTTTTGAAAGACTAGAAGAGATTTTGACGCAGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGTCAGCATACTTCAGTTATC</pcr_primer_p1>
		<pcr_primer_p2>GACATTCTGAAGAGAGGTATGG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCAGTCAGCATACTTCAGTTATCTTTTTTCACCTCTTTCGAAATTCGTTAGTTTCGGTAGATTTCACTCTCCAAGTGTGCCTTTGTTTCTTTAAAGGCACATATCTCAAAAACCAGAAAAGCTAATTGAAATTTGAAAAATACCAAAATGAAGAACATGAAATTTCCTACATTTTCGTAATTTACAACTTTTTGATAGCCTTCTTAGTTCTCGAGATATGCGCCTTTAAACCATACCTCTCTTCAGAATGTC</canonical_amplicon>
		<polymorphic_amplicon>GCAGTCAGCATACTTCAGTTATCTTTTTTCACCTCTTTCGAAATTCGTTAGTTTCGGTAGATTTCACTCTCCAAGTGTGCCTTTGTTTCTTTAAAGGCACATATCTCAAAAACCARAAAAGCTAATTGAAATTTGAAAAATACCAAAATGAAGAACATGAAATTTCCTACATTTTCGTAATTTACAACTTTTTGATAGCCTTCTTAGTTCTCGAGATATGCGCCTTTAAACCATACCTCTCTTCAGAATGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36368</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>43109</contig_pos>
        <strand></strand>
        <context>aatttgaaaa[A/G]taccaaaatg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTAAAGGCACATATCTCAAAAACCAGAAAAGCTAATTGAAATTTGAAAA</left_flank>
        <right_flank>TACCAAAATGAAGAACATGAAATTTCCTACATTTTCGTAATTTACAACTT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATAATAATTTCAGAACTAATAATTGCAAACAGTAGTACTGGGACCGGAAATTCAGTGCTCTAATTAAATAAATGATTTTTAAGAAGTTGTTCTTGTATAATTGTTTATATATCAAAAACTAAAAATGCTATCGAAAAGTAATTAACTACAATATTGCTCAGCATAAAATTTTACACATTTTGTTAGTTTACAAATTTTCGATTGGTCCTCTGGTTAGTGAGATATGCGCCTTTAAAGAGACACAGGCTATTCTGCGTCCTTTCACGTGGAGAGAGAGAGAGAGAGAGAGAGGGTAGAGACGCAGAGAAACCCATGATATAATTGAAACAACAACAAAAACGTCTTGTTTTACAGATAAGCAGTCAGCATACTTCAGTTATCTTTTTTCACCTCTTTCGAAATTCGTTAGTTTCGGTAGATTTCACTCTCCAAGTGTGCCTTTGTTTCTTTAAAGGCACATATCTCAAAAACCAGAAAAGCTAATTGAAATTTGAAAAATACCAAAATGAAGAACATGAAATTTCCTACATTTTCGTAATTTACAACTTTTTGATAGCCTTCTTAGTTCTCGAGATATGCGCCTTTAAACCATACCTCTCTTCAGAATGTCCACCGGTCACGCCTACCAATGGCTTACCGAGTCTCAGAAGGCTAATATTCTGGAAGTATTCTTTTCCTACGAATTCAACCATTATTTTATAAAACTAGAACTCCCGAATGGCTTTTTACATTTCGACTATAACTATGAATATGGATCTACCGTAGTGAGCTATGAGCGAGAGAAGTTATTGGTTGAAAAAGAATTGGCTAAAGTGTTTTTGGATGATCTGGAATTAATTTTGAAGAATCAAAAATTGAAATTAGGACAGTTACATATGCAAGTGATGCCTAACATCTTCCAAGAACATTATCAAGGACTCCAAGAAACTCTTAATACCATTTTTGAAAGACTAGAAGAGATTTTGACGCAGAGAAGCGAGAAGTTGGTGGTTACCCAA</canonical>
            <polymorphic>AAATAATAATTTCAGAACTAATAATTGCAAACAGTAGTACTGGGACCGGAAATTCAGTGCTCTAATTAAATAAATGATTTTTAAGAAGTTGTTCTTGTATAATTGTTTATATATCAAAAACTAAAAATGCTATCGAAAAGTAATTAACTACAATATTGCTCAGCATAAAATTTTACACATTTTGTTAGTTTACAAATTTTCGATTGGTCCTCTGGTTAGTGAGATATGCGCCTTTAAAGAGACACAGGCTATTCTGCGTCCTTTCACGTGGAGAGAGAGAGAGAGAGAGAGAGGGTAGAGACGCAGAGAAACCCATGATATAATTGAAACAACAACAAAAACGTCTTGTTTTACAGATAAGCAGTCAGCATACTTCAGTTATCTTTTTTCACCTCTTTCGAAATTCGTTAGTTTCGGTAGATTTCACTCTCCAAGTGTGCCTTTGTTTCTTTAAAGGCACATATCTCAAAAACCAGAAAAGCTAATTGAAATTTGAAAARTACCAAAATGAAGAACATGAAATTTCCTACATTTTCGTAATTTACAACTTTTTGATAGCCTTCTTAGTTCTCGAGATATGCGCCTTTAAACCATACCTCTCTTCAGAATGTCCACCGGTCACGCCTACCAATGGCTTACCGAGTCTCAGAAGGCTAATATTCTGGAAGTATTCTTTTCCTACGAATTCAACCATTATTTTATAAAACTAGAACTCCCGAATGGCTTTTTACATTTCGACTATAACTATGAATATGGATCTACCGTAGTGAGCTATGAGCGAGAGAAGTTATTGGTTGAAAAAGAATTGGCTAAAGTGTTTTTGGATGATCTGGAATTAATTTTGAAGAATCAAAAATTGAAATTAGGACAGTTACATATGCAAGTGATGCCTAACATCTTCCAAGAACATTATCAAGGACTCCAAGAAACTCTTAATACCATTTTTGAAAGACTAGAAGAGATTTTGACGCAGAGAAGCGAGAAGTTGGTGGTTACCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGTCAGCATACTTCAGTTATC</pcr_primer_p1>
		<pcr_primer_p2>GACATTCTGAAGAGAGGTATGG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCAGTCAGCATACTTCAGTTATCTTTTTTCACCTCTTTCGAAATTCGTTAGTTTCGGTAGATTTCACTCTCCAAGTGTGCCTTTGTTTCTTTAAAGGCACATATCTCAAAAACCAGAAAAGCTAATTGAAATTTGAAAAATACCAAAATGAAGAACATGAAATTTCCTACATTTTCGTAATTTACAACTTTTTGATAGCCTTCTTAGTTCTCGAGATATGCGCCTTTAAACCATACCTCTCTTCAGAATGTC</canonical_amplicon>
		<polymorphic_amplicon>GCAGTCAGCATACTTCAGTTATCTTTTTTCACCTCTTTCGAAATTCGTTAGTTTCGGTAGATTTCACTCTCCAAGTGTGCCTTTGTTTCTTTAAAGGCACATATCTCAAAAACCAGAAAAGCTAATTGAAATTTGAAAARTACCAAAATGAAGAACATGAAATTTCCTACATTTTCGTAATTTACAACTTTTTGATAGCCTTCTTAGTTCTCGAGATATGCGCCTTTAAACCATACCTCTCTTCAGAATGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36369</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>43496</contig_pos>
        <strand></strand>
        <context>TATGCAAGTG[A/G]YGYCTAACAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATTTTGAAGAATCAAAAATTGAAATTAGGACAGTTACATATGCAAGTG</left_flank>
        <right_flank>TGCCTAACATCTTCCAAGAACATTATCAAGGACTCCAAGAAACTCTTAAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCACCTCTTTCGAAATTCGTTAGTTTCGGTAGATTTCACTCTCCAAGTGTGCCTTTGTTTCTTTAAAGGCACATATCTCAAAAACCAGAAAAGCTAATTGAAATTTGAAAAATACCAAAATGAAGAACATGAAATTTCCTACATTTTCGTAATTTACAACTTTTTGATAGCCTTCTTAGTTCTCGAGATATGCGCCTTTAAACCATACCTCTCTTCAGAATGTCCACCGGTCACGCCTACCAATGGCTTACCGAGTCTCAGAAGGCTAATATTCTGGAAGTATTCTTTTCCTACGAATTCAACCATTATTTTATAAAACTAGAACTCCCGAATGGCTTTTTACATTTCGACTATAACTATGAATATGGATCTACCGTAGTGAGCTATGAGCGAGAGAAGTTATTGGTTGAAAAAGAATTGGCTAAAGTGTTTTTGGATGATCTGGAATTAATTTTGAAGAATCAAAAATTGAAATTAGGACAGTTACATATGCAAGTGATGCCTAACATCTTCCAAGAACATTATCAAGGACTCCAAGAAACTCTTAATACCATTTTTGAAAGACTAGAAGAGATTTTGACGCAGAGAAGCGAGAAGTTGGTGGTTACCCAACTATTCTTGTATCCTTACACTGTTAAACAAGGAATTTCAATTTTAAAATACCTGGATCCCAAAGAATTGACCTTTTTTGGAATGCGCTTTTATCAAGGAGTCGAGGCATCTGATATGGAGAATGTTCTAGAATTAGTGGAATGGAACAGAAAGAAGCGAATCTATTTTGAATTATTGATTTTTTCAATTACCTTGGAGCACTTGGAAGTTATCAAAAAGGTATGTTTTGAGTTAAAAACATTTTTTAAAAAGTAAAAAAAAAATTTAAAAAATTAAAATTTTTTTTTTAAATTTCAGCTAACCTCCTACAGCAACTCATTTGATGTGATATCCATTATGTATCTAGAAATCGTAGATTTTGATTTAAAATATTTTTTTCAATTCATT</canonical>
            <polymorphic>TTCACCTCTTTCGAAATTCGTTAGTTTCGGTAGATTTCACTCTCCAAGTGTGCCTTTGTTTCTTTAAAGGCACATATCTCAAAAACCAGAAAAGCTAATTGAAATTTGAAAAATACCAAAATGAAGAACATGAAATTTCCTACATTTTCGTAATTTACAACTTTTTGATAGCCTTCTTAGTTCTCGAGATATGCGCCTTTAAACCATACCTCTCTTCAGAATGTCCACCGGTCACGCCTACCAATGGCTTACCGAGTCTCAGAAGGCTAATATTCTGGAAGTATTCTTTTCCTACGAATTCAACCATTATTTTATAAAACTAGAACTCCCGAATGGCTTTTTACATTTCGACTATAACTATGAATATGGATCTACCGTAGTGAGCTATGAGCGAGAGAAGTTATTGGTTGAAAAAGAATTGGCTAAAGTGTTTTTGGATGATCTGGAATTAATTTTGAAGAATCAAAAATTGAAATTAGGACAGTTACATATGCAAGTGRTGCCTAACATCTTCCAAGAACATTATCAAGGACTCCAAGAAACTCTTAATACCATTTTTGAAAGACTAGAAGAGATTTTGACGCAGAGAAGCGAGAAGTTGGTGGTTACCCAACTATTCTTGTATCCTTACACTGTTAAACAAGGAATTTCAATTTTAAAATACCTGGATCCCAAAGAATTGACCTTTTTTGGAATGCGCTTTTATCAAGGAGTCGAGGCATCTGATATGGAGAATGTTCTAGAATTAGTGGAATGGAACAGAAAGAAGCGAATCTATTTTGAATTATTGATTTTTTCAATTACCTTGGAGCACTTGGAAGTTATCAAAAAGGTATGTTTTGAGTTAAAAACATTTTTTAAAAAGTAAAAAAAAAATTTAAAAAATTAAAATTTTTTTTTTAAATTTCAGCTAACCTCCTACAGCAACTCATTTGATGTGATATCCATTATGTATCTAGAAATCGTAGATTTTGATTTAAAATATTTTTTTCAATTCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTATTGGTTGAAAAAGAATTG</pcr_primer_p1>
		<pcr_primer_p2>ATTCCTTGTTTAACAGTGTAAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTTATTGGTTGAAAAAGAATTGGCTAAAGTGTTTTTGGATGATCTGGAATTAATTTTGAAGAATCAAAAATTGAAATTAGGACAGTTACATATGCAAGTGATGCCTAACATCTTCCAAGAACATTATCAAGGACTCCAAGAAACTCTTAATACCATTTTTGAAAGACTAGAAGAGATTTTGACGCAGAGAAGCGAGAAGTTGGTGGTTACCCAACTATTCTTGTATCCTTACACTGTTAAACAAGGAAT</canonical_amplicon>
		<polymorphic_amplicon>AGTTATTGGTTGAAAAAGAATTGGCTAAAGTGTTTTTGGATGATCTGGAATTAATTTTGAAGAATCAAAAATTGAAATTAGGACAGTTACATATGCAAGTGRTGCCTAACATCTTCCAAGAACATTATCAAGGACTCCAAGAAACTCTTAATACCATTTTTGAAAGACTAGAAGAGATTTTGACGCAGAGAAGCGAGAAGTTGGTGGTTACCCAACTATTCTTGTATCCTTACACTGTTAAACAAGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36370</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>43497</contig_pos>
        <strand></strand>
        <context>ATGCAAGTGR[T/C]GYCTAACATC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATTTTGAAGAATCAAAAATTGAAATTAGGACAGTTACATATGCAAGTGA</left_flank>
        <right_flank>GCCTAACATCTTCCAAGAACATTATCAAGGACTCCAAGAAACTCTTAATA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACCTCTTTCGAAATTCGTTAGTTTCGGTAGATTTCACTCTCCAAGTGTGCCTTTGTTTCTTTAAAGGCACATATCTCAAAAACCAGAAAAGCTAATTGAAATTTGAAAAATACCAAAATGAAGAACATGAAATTTCCTACATTTTCGTAATTTACAACTTTTTGATAGCCTTCTTAGTTCTCGAGATATGCGCCTTTAAACCATACCTCTCTTCAGAATGTCCACCGGTCACGCCTACCAATGGCTTACCGAGTCTCAGAAGGCTAATATTCTGGAAGTATTCTTTTCCTACGAATTCAACCATTATTTTATAAAACTAGAACTCCCGAATGGCTTTTTACATTTCGACTATAACTATGAATATGGATCTACCGTAGTGAGCTATGAGCGAGAGAAGTTATTGGTTGAAAAAGAATTGGCTAAAGTGTTTTTGGATGATCTGGAATTAATTTTGAAGAATCAAAAATTGAAATTAGGACAGTTACATATGCAAGTGATGCCTAACATCTTCCAAGAACATTATCAAGGACTCCAAGAAACTCTTAATACCATTTTTGAAAGACTAGAAGAGATTTTGACGCAGAGAAGCGAGAAGTTGGTGGTTACCCAACTATTCTTGTATCCTTACACTGTTAAACAAGGAATTTCAATTTTAAAATACCTGGATCCCAAAGAATTGACCTTTTTTGGAATGCGCTTTTATCAAGGAGTCGAGGCATCTGATATGGAGAATGTTCTAGAATTAGTGGAATGGAACAGAAAGAAGCGAATCTATTTTGAATTATTGATTTTTTCAATTACCTTGGAGCACTTGGAAGTTATCAAAAAGGTATGTTTTGAGTTAAAAACATTTTTTAAAAAGTAAAAAAAAAATTTAAAAAATTAAAATTTTTTTTTTAAATTTCAGCTAACCTCCTACAGCAACTCATTTGATGTGATATCCATTATGTATCTAGAAATCGTAGATTTTGATTTAAAATATTTTTTTCAATTCATTT</canonical>
            <polymorphic>TCACCTCTTTCGAAATTCGTTAGTTTCGGTAGATTTCACTCTCCAAGTGTGCCTTTGTTTCTTTAAAGGCACATATCTCAAAAACCAGAAAAGCTAATTGAAATTTGAAAAATACCAAAATGAAGAACATGAAATTTCCTACATTTTCGTAATTTACAACTTTTTGATAGCCTTCTTAGTTCTCGAGATATGCGCCTTTAAACCATACCTCTCTTCAGAATGTCCACCGGTCACGCCTACCAATGGCTTACCGAGTCTCAGAAGGCTAATATTCTGGAAGTATTCTTTTCCTACGAATTCAACCATTATTTTATAAAACTAGAACTCCCGAATGGCTTTTTACATTTCGACTATAACTATGAATATGGATCTACCGTAGTGAGCTATGAGCGAGAGAAGTTATTGGTTGAAAAAGAATTGGCTAAAGTGTTTTTGGATGATCTGGAATTAATTTTGAAGAATCAAAAATTGAAATTAGGACAGTTACATATGCAAGTGAYGCCTAACATCTTCCAAGAACATTATCAAGGACTCCAAGAAACTCTTAATACCATTTTTGAAAGACTAGAAGAGATTTTGACGCAGAGAAGCGAGAAGTTGGTGGTTACCCAACTATTCTTGTATCCTTACACTGTTAAACAAGGAATTTCAATTTTAAAATACCTGGATCCCAAAGAATTGACCTTTTTTGGAATGCGCTTTTATCAAGGAGTCGAGGCATCTGATATGGAGAATGTTCTAGAATTAGTGGAATGGAACAGAAAGAAGCGAATCTATTTTGAATTATTGATTTTTTCAATTACCTTGGAGCACTTGGAAGTTATCAAAAAGGTATGTTTTGAGTTAAAAACATTTTTTAAAAAGTAAAAAAAAAATTTAAAAAATTAAAATTTTTTTTTTAAATTTCAGCTAACCTCCTACAGCAACTCATTTGATGTGATATCCATTATGTATCTAGAAATCGTAGATTTTGATTTAAAATATTTTTTTCAATTCATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCANNNNNTGC</site>
                <isoschizomers>
                    <enzyme>ApaBI</enzyme>
                    <enzyme>BstAPI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTATTGGTTGAAAAAGAATTG</pcr_primer_p1>
		<pcr_primer_p2>ATTCCTTGTTTAACAGTGTAAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTTATTGGTTGAAAAAGAATTGGCTAAAGTGTTTTTGGATGATCTGGAATTAATTTTGAAGAATCAAAAATTGAAATTAGGACAGTTACATATGCAAGTGATGCCTAACATCTTCCAAGAACATTATCAAGGACTCCAAGAAACTCTTAATACCATTTTTGAAAGACTAGAAGAGATTTTGACGCAGAGAAGCGAGAAGTTGGTGGTTACCCAACTATTCTTGTATCCTTACACTGTTAAACAAGGAAT</canonical_amplicon>
		<polymorphic_amplicon>AGTTATTGGTTGAAAAAGAATTGGCTAAAGTGTTTTTGGATGATCTGGAATTAATTTTGAAGAATCAAAAATTGAAATTAGGACAGTTACATATGCAAGTGAYGCCTAACATCTTCCAAGAACATTATCAAGGACTCCAAGAAACTCTTAATACCATTTTTGAAAGACTAGAAGAGATTTTGACGCAGAGAAGCGAGAAGTTGGTGGTTACCCAACTATTCTTGTATCCTTACACTGTTAAACAAGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36371</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>43499</contig_pos>
        <strand></strand>
        <context>GCAAGTGRYG[C/T]CTAACATCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGAAGAATCAAAAATTGAAATTAGGACAGTTACATATGCAAGTGATG</left_flank>
        <right_flank>CTAACATCTTCCAAGAACATTATCAAGGACTCCAAGAAACTCTTAATACC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTCTTTCGAAATTCGTTAGTTTCGGTAGATTTCACTCTCCAAGTGTGCCTTTGTTTCTTTAAAGGCACATATCTCAAAAACCAGAAAAGCTAATTGAAATTTGAAAAATACCAAAATGAAGAACATGAAATTTCCTACATTTTCGTAATTTACAACTTTTTGATAGCCTTCTTAGTTCTCGAGATATGCGCCTTTAAACCATACCTCTCTTCAGAATGTCCACCGGTCACGCCTACCAATGGCTTACCGAGTCTCAGAAGGCTAATATTCTGGAAGTATTCTTTTCCTACGAATTCAACCATTATTTTATAAAACTAGAACTCCCGAATGGCTTTTTACATTTCGACTATAACTATGAATATGGATCTACCGTAGTGAGCTATGAGCGAGAGAAGTTATTGGTTGAAAAAGAATTGGCTAAAGTGTTTTTGGATGATCTGGAATTAATTTTGAAGAATCAAAAATTGAAATTAGGACAGTTACATATGCAAGTGATGCCTAACATCTTCCAAGAACATTATCAAGGACTCCAAGAAACTCTTAATACCATTTTTGAAAGACTAGAAGAGATTTTGACGCAGAGAAGCGAGAAGTTGGTGGTTACCCAACTATTCTTGTATCCTTACACTGTTAAACAAGGAATTTCAATTTTAAAATACCTGGATCCCAAAGAATTGACCTTTTTTGGAATGCGCTTTTATCAAGGAGTCGAGGCATCTGATATGGAGAATGTTCTAGAATTAGTGGAATGGAACAGAAAGAAGCGAATCTATTTTGAATTATTGATTTTTTCAATTACCTTGGAGCACTTGGAAGTTATCAAAAAGGTATGTTTTGAGTTAAAAACATTTTTTAAAAAGTAAAAAAAAAATTTAAAAAATTAAAATTTTTTTTTTAAATTTCAGCTAACCTCCTACAGCAACTCATTTGATGTGATATCCATTATGTATCTAGAAATCGTAGATTTTGATTTAAAATATTTTTTTCAATTCATTTTC</canonical>
            <polymorphic>ACCTCTTTCGAAATTCGTTAGTTTCGGTAGATTTCACTCTCCAAGTGTGCCTTTGTTTCTTTAAAGGCACATATCTCAAAAACCAGAAAAGCTAATTGAAATTTGAAAAATACCAAAATGAAGAACATGAAATTTCCTACATTTTCGTAATTTACAACTTTTTGATAGCCTTCTTAGTTCTCGAGATATGCGCCTTTAAACCATACCTCTCTTCAGAATGTCCACCGGTCACGCCTACCAATGGCTTACCGAGTCTCAGAAGGCTAATATTCTGGAAGTATTCTTTTCCTACGAATTCAACCATTATTTTATAAAACTAGAACTCCCGAATGGCTTTTTACATTTCGACTATAACTATGAATATGGATCTACCGTAGTGAGCTATGAGCGAGAGAAGTTATTGGTTGAAAAAGAATTGGCTAAAGTGTTTTTGGATGATCTGGAATTAATTTTGAAGAATCAAAAATTGAAATTAGGACAGTTACATATGCAAGTGATGYCTAACATCTTCCAAGAACATTATCAAGGACTCCAAGAAACTCTTAATACCATTTTTGAAAGACTAGAAGAGATTTTGACGCAGAGAAGCGAGAAGTTGGTGGTTACCCAACTATTCTTGTATCCTTACACTGTTAAACAAGGAATTTCAATTTTAAAATACCTGGATCCCAAAGAATTGACCTTTTTTGGAATGCGCTTTTATCAAGGAGTCGAGGCATCTGATATGGAGAATGTTCTAGAATTAGTGGAATGGAACAGAAAGAAGCGAATCTATTTTGAATTATTGATTTTTTCAATTACCTTGGAGCACTTGGAAGTTATCAAAAAGGTATGTTTTGAGTTAAAAACATTTTTTAAAAAGTAAAAAAAAAATTTAAAAAATTAAAATTTTTTTTTTAAATTTCAGCTAACCTCCTACAGCAACTCATTTGATGTGATATCCATTATGTATCTAGAAATCGTAGATTTTGATTTAAAATATTTTTTTCAATTCATTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCANNNNNTGC</site>
                <isoschizomers>
                    <enzyme>ApaBI</enzyme>
                    <enzyme>BstAPI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTATTGGTTGAAAAAGAATTG</pcr_primer_p1>
		<pcr_primer_p2>ATTCCTTGTTTAACAGTGTAAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTTATTGGTTGAAAAAGAATTGGCTAAAGTGTTTTTGGATGATCTGGAATTAATTTTGAAGAATCAAAAATTGAAATTAGGACAGTTACATATGCAAGTGATGCCTAACATCTTCCAAGAACATTATCAAGGACTCCAAGAAACTCTTAATACCATTTTTGAAAGACTAGAAGAGATTTTGACGCAGAGAAGCGAGAAGTTGGTGGTTACCCAACTATTCTTGTATCCTTACACTGTTAAACAAGGAAT</canonical_amplicon>
		<polymorphic_amplicon>AGTTATTGGTTGAAAAAGAATTGGCTAAAGTGTTTTTGGATGATCTGGAATTAATTTTGAAGAATCAAAAATTGAAATTAGGACAGTTACATATGCAAGTGATGYCTAACATCTTCCAAGAACATTATCAAGGACTCCAAGAAACTCTTAATACCATTTTTGAAAGACTAGAAGAGATTTTGACGCAGAGAAGCGAGAAGTTGGTGGTTACCCAACTATTCTTGTATCCTTACACTGTTAAACAAGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36372</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>51842</contig_pos>
        <strand></strand>
        <context>agtttggaag[G/A]gagacgcaga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGTTCTAGCTTCCATTTAAAGCGAGTTATGCGCCTTTAAAAGTTTGGAAG</left_flank>
        <right_flank>GAGACGCAGAGAAACGAGAGTGCTCTAGCGTCTCTGCGTCTATCAATGCG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGGATTATCAAGCTAAGGAATATGGGATCTTGAATCATCAGAATGATCCAATCACCTTATCTATGATGGTGAGCCTAATTCTCCAAAAAAATCAATAATTATTTCTTCAGTGCCGTTTCCCTATCCATACCAACTTCTACACTGTAAATGTCACTCTTATCAATGCCGACAAATCCATACAGCCTCCAATTATCTTAAATTCCACTTTGGACATTTTTGTGAAATCTGTTTCCGCATTTTCTGGAATCAAAATCGAAGGAGGCGGTCCTTATTCCATACAGTATGAGTTATGGGATCCATTGGCAACTACTGTTGGATATGAGACAAGTACAAAGGCTGGCGGGAGTTTGAATTTTTGGATGGGCCTGGTTTTGGCGGGGATTTTGAATTTATTGTGAATAAAGGTTTTTATGTCTTAAAATTTCCAATAATTCTGTAAAGTTTTCATAGTTCTAGCTTCCATTTAAAGCGAGTTATGCGCCTTTAAAAGTTTGGAAGGGAGACGCAGAGAAACGAGAGTGCTCTAGCGTCTCTGCGTCTATCAATGCGTTTAAAGACGCATAACTTTGCTTGAAGTTGTTCAATTTTAATGATTTTTAGCTAGATTCGTAGGAAACTTAAGGACTACAGGATAATATAAAATTCAAAAAAAAAAGTATTGTTTTCGATTTTTCGCAATTTTTTAATTTTTTTTTCAAATTTTTCAAAAGCATTGAGTATCATCCAGAAGCCCTTAAAACTTCCAATGATTCTGTATAATTTTCAAAGTCCTAGCTTTCCTTTGAAGAGAGTTATGCGCCTTTAAAAGTTTGGAAGAGAGACGCAGAGAAGCGAGAGTGCTCTAGCGTCTCTGCGTCTCTTAAAACGTTCAAAGACGCATAACTTGGCTTGAAGTTGTTCAATTTTAATGATTTTTAGCTGGATATGTAAAACATTTTGAGGGCTACAGAAATATAAATAAGAAGTCATCAAGCTGGTGCGCCTTCGGCGCCCCCTGTG</canonical>
            <polymorphic>CCGGATTATCAAGCTAAGGAATATGGGATCTTGAATCATCAGAATGATCCAATCACCTTATCTATGATGGTGAGCCTAATTCTCCAAAAAAATCAATAATTATTTCTTCAGTGCCGTTTCCCTATCCATACCAACTTCTACACTGTAAATGTCACTCTTATCAATGCCGACAAATCCATACAGCCTCCAATTATCTTAAATTCCACTTTGGACATTTTTGTGAAATCTGTTTCCGCATTTTCTGGAATCAAAATCGAAGGAGGCGGTCCTTATTCCATACAGTATGAGTTATGGGATCCATTGGCAACTACTGTTGGATATGAGACAAGTACAAAGGCTGGCGGGAGTTTGAATTTTTGGATGGGCCTGGTTTTGGCGGGGATTTTGAATTTATTGTGAATAAAGGTTTTTATGTCTTAAAATTTCCAATAATTCTGTAAAGTTTTCATAGTTCTAGCTTCCATTTAAAGCGAGTTATGCGCCTTTAAAAGTTTGGAAGRGAGACGCAGAGAAACGAGAGTGCTCTAGCGTCTCTGCGTCTATCAATGCGTTTAAAGACGCATAACTTTGCTTGAAGTTGTTCAATTTTAATGATTTTTAGCTAGATTCGTAGGAAACTTAAGGACTACAGGATAATATAAAATTCAAAAAAAAAAGTATTGTTTTCGATTTTTCGCAATTTTTTAATTTTTTTTTCAAATTTTTCAAAAGCATTGAGTATCATCCAGAAGCCCTTAAAACTTCCAATGATTCTGTATAATTTTCAAAGTCCTAGCTTTCCTTTGAAGAGAGTTATGCGCCTTTAAAAGTTTGGAAGAGAGACGCAGAGAAGCGAGAGTGCTCTAGCGTCTCTGCGTCTCTTAAAACGTTCAAAGACGCATAACTTGGCTTGAAGTTGTTCAATTTTAATGATTTTTAGCTGGATATGTAAAACATTTTGAGGGCTACAGAAATATAAATAAGAAGTCATCAAGCTGGTGCGCCTTCGGCGCCCCCTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGATTTTGAATTTATTGTGAA</pcr_primer_p1>
		<pcr_primer_p2>CGAAAAATCGAAAACAATACTT</pcr_primer_p2>
		<pcr_amplicon_size>298</pcr_amplicon_size>
		<canonical_amplicon>GGGATTTTGAATTTATTGTGAATAAAGGTTTTTATGTCTTAAAATTTCCAATAATTCTGTAAAGTTTTCATAGTTCTAGCTTCCATTTAAAGCGAGTTATGCGCCTTTAAAAGTTTGGAAGGGAGACGCAGAGAAACGAGAGTGCTCTAGCGTCTCTGCGTCTATCAATGCGTTTAAAGACGCATAACTTTGCTTGAAGTTGTTCAATTTTAATGATTTTTAGCTAGATTCGTAGGAAACTTAAGGACTACAGGATAATATAAAATTCAAAAAAAAAAGTATTGTTTTCGATTTTTCG</canonical_amplicon>
		<polymorphic_amplicon>GGGATTTTGAATTTATTGTGAATAAAGGTTTTTATGTCTTAAAATTTCCAATAATTCTGTAAAGTTTTCATAGTTCTAGCTTCCATTTAAAGCGAGTTATGCGCCTTTAAAAGTTTGGAAGRGAGACGCAGAGAAACGAGAGTGCTCTAGCGTCTCTGCGTCTATCAATGCGTTTAAAGACGCATAACTTTGCTTGAAGTTGTTCAATTTTAATGATTTTTAGCTAGATTCGTAGGAAACTTAAGGACTACAGGATAATATAAAATTCAAAAAAAAAAGTATTGTTTTCGATTTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36373</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>51856</contig_pos>
        <strand></strand>
        <context>acgcagagaa[A/G]cgagagtgct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTAAAGCGAGTTATGCGCCTTTAAAAGTTTGGAAGGGAGACGCAGAGAA</left_flank>
        <right_flank>CGAGAGTGCTCTAGCGTCTCTGCGTCTATCAATGCGTTTAAAGACGCATA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGGAATATGGGATCTTGAATCATCAGAATGATCCAATCACCTTATCTATGATGGTGAGCCTAATTCTCCAAAAAAATCAATAATTATTTCTTCAGTGCCGTTTCCCTATCCATACCAACTTCTACACTGTAAATGTCACTCTTATCAATGCCGACAAATCCATACAGCCTCCAATTATCTTAAATTCCACTTTGGACATTTTTGTGAAATCTGTTTCCGCATTTTCTGGAATCAAAATCGAAGGAGGCGGTCCTTATTCCATACAGTATGAGTTATGGGATCCATTGGCAACTACTGTTGGATATGAGACAAGTACAAAGGCTGGCGGGAGTTTGAATTTTTGGATGGGCCTGGTTTTGGCGGGGATTTTGAATTTATTGTGAATAAAGGTTTTTATGTCTTAAAATTTCCAATAATTCTGTAAAGTTTTCATAGTTCTAGCTTCCATTTAAAGCGAGTTATGCGCCTTTAAAAGTTTGGAAGGGAGACGCAGAGAAACGAGAGTGCTCTAGCGTCTCTGCGTCTATCAATGCGTTTAAAGACGCATAACTTTGCTTGAAGTTGTTCAATTTTAATGATTTTTAGCTAGATTCGTAGGAAACTTAAGGACTACAGGATAATATAAAATTCAAAAAAAAAAGTATTGTTTTCGATTTTTCGCAATTTTTTAATTTTTTTTTCAAATTTTTCAAAAGCATTGAGTATCATCCAGAAGCCCTTAAAACTTCCAATGATTCTGTATAATTTTCAAAGTCCTAGCTTTCCTTTGAAGAGAGTTATGCGCCTTTAAAAGTTTGGAAGAGAGACGCAGAGAAGCGAGAGTGCTCTAGCGTCTCTGCGTCTCTTAAAACGTTCAAAGACGCATAACTTGGCTTGAAGTTGTTCAATTTTAATGATTTTTAGCTGGATATGTAAAACATTTTGAGGGCTACAGAAATATAAATAAGAAGTCATCAAGCTGGTGCGCCTTCGGCGCCCCCTGTGAGACACTGCCCCTT</canonical>
            <polymorphic>TAAGGAATATGGGATCTTGAATCATCAGAATGATCCAATCACCTTATCTATGATGGTGAGCCTAATTCTCCAAAAAAATCAATAATTATTTCTTCAGTGCCGTTTCCCTATCCATACCAACTTCTACACTGTAAATGTCACTCTTATCAATGCCGACAAATCCATACAGCCTCCAATTATCTTAAATTCCACTTTGGACATTTTTGTGAAATCTGTTTCCGCATTTTCTGGAATCAAAATCGAAGGAGGCGGTCCTTATTCCATACAGTATGAGTTATGGGATCCATTGGCAACTACTGTTGGATATGAGACAAGTACAAAGGCTGGCGGGAGTTTGAATTTTTGGATGGGCCTGGTTTTGGCGGGGATTTTGAATTTATTGTGAATAAAGGTTTTTATGTCTTAAAATTTCCAATAATTCTGTAAAGTTTTCATAGTTCTAGCTTCCATTTAAAGCGAGTTATGCGCCTTTAAAAGTTTGGAAGGGAGACGCAGAGAARCGAGAGTGCTCTAGCGTCTCTGCGTCTATCAATGCGTTTAAAGACGCATAACTTTGCTTGAAGTTGTTCAATTTTAATGATTTTTAGCTAGATTCGTAGGAAACTTAAGGACTACAGGATAATATAAAATTCAAAAAAAAAAGTATTGTTTTCGATTTTTCGCAATTTTTTAATTTTTTTTTCAAATTTTTCAAAAGCATTGAGTATCATCCAGAAGCCCTTAAAACTTCCAATGATTCTGTATAATTTTCAAAGTCCTAGCTTTCCTTTGAAGAGAGTTATGCGCCTTTAAAAGTTTGGAAGAGAGACGCAGAGAAGCGAGAGTGCTCTAGCGTCTCTGCGTCTCTTAAAACGTTCAAAGACGCATAACTTGGCTTGAAGTTGTTCAATTTTAATGATTTTTAGCTGGATATGTAAAACATTTTGAGGGCTACAGAAATATAAATAAGAAGTCATCAAGCTGGTGCGCCTTCGGCGCCCCCTGTGAGACACTGCCCCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGATTTTGAATTTATTGTGAA</pcr_primer_p1>
		<pcr_primer_p2>CGAAAAATCGAAAACAATACTT</pcr_primer_p2>
		<pcr_amplicon_size>298</pcr_amplicon_size>
		<canonical_amplicon>GGGATTTTGAATTTATTGTGAATAAAGGTTTTTATGTCTTAAAATTTCCAATAATTCTGTAAAGTTTTCATAGTTCTAGCTTCCATTTAAAGCGAGTTATGCGCCTTTAAAAGTTTGGAAGGGAGACGCAGAGAAACGAGAGTGCTCTAGCGTCTCTGCGTCTATCAATGCGTTTAAAGACGCATAACTTTGCTTGAAGTTGTTCAATTTTAATGATTTTTAGCTAGATTCGTAGGAAACTTAAGGACTACAGGATAATATAAAATTCAAAAAAAAAAGTATTGTTTTCGATTTTTCG</canonical_amplicon>
		<polymorphic_amplicon>GGGATTTTGAATTTATTGTGAATAAAGGTTTTTATGTCTTAAAATTTCCAATAATTCTGTAAAGTTTTCATAGTTCTAGCTTCCATTTAAAGCGAGTTATGCGCCTTTAAAAGTTTGGAAGGGAGACGCAGAGAARCGAGAGTGCTCTAGCGTCTCTGCGTCTATCAATGCGTTTAAAGACGCATAACTTTGCTTGAAGTTGTTCAATTTTAATGATTTTTAGCTAGATTCGTAGGAAACTTAAGGACTACAGGATAATATAAAATTCAAAAAAAAAAGTATTGTTTTCGATTTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36374</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>51902</contig_pos>
        <strand></strand>
        <context>gtttaaagac[G/C]cataactttg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AGAAACGAGAGTGCTCTAGCGTCTCTGCGTCTATCAATGCGTTTAAAGAC</left_flank>
        <right_flank>CATAACTTTGCTTGAAGTTGTTCAATTTTAATGATTTTTAGCTAGATTCG</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTATGATGGTGAGCCTAATTCTCCAAAAAAATCAATAATTATTTCTTCAGTGCCGTTTCCCTATCCATACCAACTTCTACACTGTAAATGTCACTCTTATCAATGCCGACAAATCCATACAGCCTCCAATTATCTTAAATTCCACTTTGGACATTTTTGTGAAATCTGTTTCCGCATTTTCTGGAATCAAAATCGAAGGAGGCGGTCCTTATTCCATACAGTATGAGTTATGGGATCCATTGGCAACTACTGTTGGATATGAGACAAGTACAAAGGCTGGCGGGAGTTTGAATTTTTGGATGGGCCTGGTTTTGGCGGGGATTTTGAATTTATTGTGAATAAAGGTTTTTATGTCTTAAAATTTCCAATAATTCTGTAAAGTTTTCATAGTTCTAGCTTCCATTTAAAGCGAGTTATGCGCCTTTAAAAGTTTGGAAGGGAGACGCAGAGAAACGAGAGTGCTCTAGCGTCTCTGCGTCTATCAATGCGTTTAAAGACGCATAACTTTGCTTGAAGTTGTTCAATTTTAATGATTTTTAGCTAGATTCGTAGGAAACTTAAGGACTACAGGATAATATAAAATTCAAAAAAAAAAGTATTGTTTTCGATTTTTCGCAATTTTTTAATTTTTTTTTCAAATTTTTCAAAAGCATTGAGTATCATCCAGAAGCCCTTAAAACTTCCAATGATTCTGTATAATTTTCAAAGTCCTAGCTTTCCTTTGAAGAGAGTTATGCGCCTTTAAAAGTTTGGAAGAGAGACGCAGAGAAGCGAGAGTGCTCTAGCGTCTCTGCGTCTCTTAAAACGTTCAAAGACGCATAACTTGGCTTGAAGTTGTTCAATTTTAATGATTTTTAGCTGGATATGTAAAACATTTTGAGGGCTACAGAAATATAAATAAGAAGTCATCAAGCTGGTGCGCCTTCGGCGCCCCCTGTGAGACACTGCCCCTTTTCCCACCTGTCGGTATGTTCTACGTCATAATATTGTTAATTTAAC</canonical>
            <polymorphic>TCTATGATGGTGAGCCTAATTCTCCAAAAAAATCAATAATTATTTCTTCAGTGCCGTTTCCCTATCCATACCAACTTCTACACTGTAAATGTCACTCTTATCAATGCCGACAAATCCATACAGCCTCCAATTATCTTAAATTCCACTTTGGACATTTTTGTGAAATCTGTTTCCGCATTTTCTGGAATCAAAATCGAAGGAGGCGGTCCTTATTCCATACAGTATGAGTTATGGGATCCATTGGCAACTACTGTTGGATATGAGACAAGTACAAAGGCTGGCGGGAGTTTGAATTTTTGGATGGGCCTGGTTTTGGCGGGGATTTTGAATTTATTGTGAATAAAGGTTTTTATGTCTTAAAATTTCCAATAATTCTGTAAAGTTTTCATAGTTCTAGCTTCCATTTAAAGCGAGTTATGCGCCTTTAAAAGTTTGGAAGGGAGACGCAGAGAAACGAGAGTGCTCTAGCGTCTCTGCGTCTATCAATGCGTTTAAAGACSCATAACTTTGCTTGAAGTTGTTCAATTTTAATGATTTTTAGCTAGATTCGTAGGAAACTTAAGGACTACAGGATAATATAAAATTCAAAAAAAAAAGTATTGTTTTCGATTTTTCGCAATTTTTTAATTTTTTTTTCAAATTTTTCAAAAGCATTGAGTATCATCCAGAAGCCCTTAAAACTTCCAATGATTCTGTATAATTTTCAAAGTCCTAGCTTTCCTTTGAAGAGAGTTATGCGCCTTTAAAAGTTTGGAAGAGAGACGCAGAGAAGCGAGAGTGCTCTAGCGTCTCTGCGTCTCTTAAAACGTTCAAAGACGCATAACTTGGCTTGAAGTTGTTCAATTTTAATGATTTTTAGCTGGATATGTAAAACATTTTGAGGGCTACAGAAATATAAATAAGAAGTCATCAAGCTGGTGCGCCTTCGGCGCCCCCTGTGAGACACTGCCCCTTTTCCCACCTGTCGGTATGTTCTACGTCATAATATTGTTAATTTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGATTTTGAATTTATTGTGAA</pcr_primer_p1>
		<pcr_primer_p2>CGAAAAATCGAAAACAATACTT</pcr_primer_p2>
		<pcr_amplicon_size>298</pcr_amplicon_size>
		<canonical_amplicon>GGGATTTTGAATTTATTGTGAATAAAGGTTTTTATGTCTTAAAATTTCCAATAATTCTGTAAAGTTTTCATAGTTCTAGCTTCCATTTAAAGCGAGTTATGCGCCTTTAAAAGTTTGGAAGGGAGACGCAGAGAAACGAGAGTGCTCTAGCGTCTCTGCGTCTATCAATGCGTTTAAAGACGCATAACTTTGCTTGAAGTTGTTCAATTTTAATGATTTTTAGCTAGATTCGTAGGAAACTTAAGGACTACAGGATAATATAAAATTCAAAAAAAAAAGTATTGTTTTCGATTTTTCG</canonical_amplicon>
		<polymorphic_amplicon>GGGATTTTGAATTTATTGTGAATAAAGGTTTTTATGTCTTAAAATTTCCAATAATTCTGTAAAGTTTTCATAGTTCTAGCTTCCATTTAAAGCGAGTTATGCGCCTTTAAAAGTTTGGAAGGGAGACGCAGAGAAACGAGAGTGCTCTAGCGTCTCTGCGTCTATCAATGCGTTTAAAGACSCATAACTTTGCTTGAAGTTGTTCAATTTTAATGATTTTTAGCTAGATTCGTAGGAAACTTAAGGACTACAGGATAATATAAAATTCAAAAAAAAAAGTATTGTTTTCGATTTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36375</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>51947</contig_pos>
        <strand>-</strand>
        <context>tttttagcta[A/T]attcgtagga</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGACGCATAACTTTGCTTGAAGTTGTTCAATTTTAATGATTTTTAGCTA</left_flank>
        <right_flank>ATTCGTAGGAAACTTAAGGACTACAGGATAATATAAAATTCAAAAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCAGTGCCGTTTCCCTATCCATACCAACTTCTACACTGTAAATGTCACTCTTATCAATGCCGACAAATCCATACAGCCTCCAATTATCTTAAATTCCACTTTGGACATTTTTGTGAAATCTGTTTCCGCATTTTCTGGAATCAAAATCGAAGGAGGCGGTCCTTATTCCATACAGTATGAGTTATGGGATCCATTGGCAACTACTGTTGGATATGAGACAAGTACAAAGGCTGGCGGGAGTTTGAATTTTTGGATGGGCCTGGTTTTGGCGGGGATTTTGAATTTATTGTGAATAAAGGTTTTTATGTCTTAAAATTTCCAATAATTCTGTAAAGTTTTCATAGTTCTAGCTTCCATTTAAAGCGAGTTATGCGCCTTTAAAAGTTTGGAAGGGAGACGCAGAGAAACGAGAGTGCTCTAGCGTCTCTGCGTCTATCAATGCGTTTAAAGACGCATAACTTTGCTTGAAGTTGTTCAATTTTAATGATTTTTAGCTAGATTCGTAGGAAACTTAAGGACTACAGGATAATATAAAATTCAAAAAAAAAAGTATTGTTTTCGATTTTTCGCAATTTTTTAATTTTTTTTTCAAATTTTTCAAAAGCATTGAGTATCATCCAGAAGCCCTTAAAACTTCCAATGATTCTGTATAATTTTCAAAGTCCTAGCTTTCCTTTGAAGAGAGTTATGCGCCTTTAAAAGTTTGGAAGAGAGACGCAGAGAAGCGAGAGTGCTCTAGCGTCTCTGCGTCTCTTAAAACGTTCAAAGACGCATAACTTGGCTTGAAGTTGTTCAATTTTAATGATTTTTAGCTGGATATGTAAAACATTTTGAGGGCTACAGAAATATAAATAAGAAGTCATCAAGCTGGTGCGCCTTCGGCGCCCCCTGTGAGACACTGCCCCTTTTCCCACCTGTCGGTATGTTCTACGTCATAATATTGTTAATTTAACATCCGATGTTTCATGGATTTCGAAATTTCATATTTAATTAGTTTC</canonical>
            <polymorphic>CTTCAGTGCCGTTTCCCTATCCATACCAACTTCTACACTGTAAATGTCACTCTTATCAATGCCGACAAATCCATACAGCCTCCAATTATCTTAAATTCCACTTTGGACATTTTTGTGAAATCTGTTTCCGCATTTTCTGGAATCAAAATCGAAGGAGGCGGTCCTTATTCCATACAGTATGAGTTATGGGATCCATTGGCAACTACTGTTGGATATGAGACAAGTACAAAGGCTGGCGGGAGTTTGAATTTTTGGATGGGCCTGGTTTTGGCGGGGATTTTGAATTTATTGTGAATAAAGGTTTTTATGTCTTAAAATTTCCAATAATTCTGTAAAGTTTTCATAGTTCTAGCTTCCATTTAAAGCGAGTTATGCGCCTTTAAAAGTTTGGAAGGGAGACGCAGAGAAACGAGAGTGCTCTAGCGTCTCTGCGTCTATCAATGCGTTTAAAGACGCATAACTTTGCTTGAAGTTGTTCAATTTTAATGATTTTTAGCTAWATTCGTAGGAAACTTAAGGACTACAGGATAATATAAAATTCAAAAAAAAAAGTATTGTTTTCGATTTTTCGCAATTTTTTAATTTTTTTTTCAAATTTTTCAAAAGCATTGAGTATCATCCAGAAGCCCTTAAAACTTCCAATGATTCTGTATAATTTTCAAAGTCCTAGCTTTCCTTTGAAGAGAGTTATGCGCCTTTAAAAGTTTGGAAGAGAGACGCAGAGAAGCGAGAGTGCTCTAGCGTCTCTGCGTCTCTTAAAACGTTCAAAGACGCATAACTTGGCTTGAAGTTGTTCAATTTTAATGATTTTTAGCTGGATATGTAAAACATTTTGAGGGCTACAGAAATATAAATAAGAAGTCATCAAGCTGGTGCGCCTTCGGCGCCCCCTGTGAGACACTGCCCCTTTTCCCACCTGTCGGTATGTTCTACGTCATAATATTGTTAATTTAACATCCGATGTTTCATGGATTTCGAAATTTCATATTTAATTAGTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>349 262 170 77 71 71</canonical_bands>
                <polymorphic_bands>349 262 247 71 71</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>360 356 144 140</canonical_bands>
                <polymorphic_bands>504 356 140</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>360 356 144 140</canonical_bands>
                <polymorphic_bands>504 356 140</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGATTTTGAATTTATTGTGAA</pcr_primer_p1>
		<pcr_primer_p2>CGAAAAATCGAAAACAATACTT</pcr_primer_p2>
		<pcr_amplicon_size>298</pcr_amplicon_size>
		<canonical_amplicon>GGGATTTTGAATTTATTGTGAATAAAGGTTTTTATGTCTTAAAATTTCCAATAATTCTGTAAAGTTTTCATAGTTCTAGCTTCCATTTAAAGCGAGTTATGCGCCTTTAAAAGTTTGGAAGGGAGACGCAGAGAAACGAGAGTGCTCTAGCGTCTCTGCGTCTATCAATGCGTTTAAAGACGCATAACTTTGCTTGAAGTTGTTCAATTTTAATGATTTTTAGCTAGATTCGTAGGAAACTTAAGGACTACAGGATAATATAAAATTCAAAAAAAAAAGTATTGTTTTCGATTTTTCG</canonical_amplicon>
		<polymorphic_amplicon>GGGATTTTGAATTTATTGTGAATAAAGGTTTTTATGTCTTAAAATTTCCAATAATTCTGTAAAGTTTTCATAGTTCTAGCTTCCATTTAAAGCGAGTTATGCGCCTTTAAAAGTTTGGAAGGGAGACGCAGAGAAACGAGAGTGCTCTAGCGTCTCTGCGTCTATCAATGCGTTTAAAGACGCATAACTTTGCTTGAAGTTGTTCAATTTTAATGATTTTTAGCTAWATTCGTAGGAAACTTAAGGACTACAGGATAATATAAAATTCAAAAAAAAAAGTATTGTTTTCGATTTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36376</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>56563</contig_pos>
        <strand></strand>
        <context>aattttcaaa[A/G]ttttcaaaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATAAGTACAAAGTGCTTATCCAGACACACAAAAATTGAAAATTTTCAAA</left_flank>
        <right_flank>TTTTCAAAAAAAAACTTTTTTTGAAAACTGTTTTAATTTGTTATAAATAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGTACTAGTCCGTTTTGTTTGAAATTTTCAGAAAATATAGAAAAAGTCTAGAACTCCATTTTTGTAGTTGACAACTTTTTTGAAAAATCGATATTTGAAGAGATAGAGAGACGCAGACAGTTAGAGCCACCTAGACTTTAAGCTGCCAAAGCTCAGCGCCTAGTAAGGCCAGAAACGTTGTTTTTCCTGCGAAAAACTTGGAATTTTAATATTAAAAATATGAATAATTAAATTTCCTATATTTTGTACTAAAAAAACACTTTTCTAGCTATACTAGGAGCCAAGATATGTCTATTTGAAGCTCAGGCAGCTAGAGACGCAGACAGCTAGATACTCTAACTCTCTGCGTCTCTATCTATCTAGATATAGATTTTTCTAAAAAGTTGTCAACTACAAAAATAAAGTGCTAGATTAGTTTTATAATTGCTAAAATTTTCAGAACAATCTAATAAGTACAAAGTGCTTATCCAGACACACAAAAATTGAAAATTTTCAAAATTTTCAAAAAAAAACTTTTTTTGAAAACTGTTTTAATTTGTTATAAATAGGAATCCTTTATAATCAACCCTCAATTAACTACCTACCGTACTGTCCACAGTCTGGAAGGGTATTCTGAATGCGTGATTGGTCGAATTCACGCCCGTAACGATCCACACACCAGCAGTGTCCGTCGTGGCATTGCTCAGGTTTGTAGAAGCCTTCGAGATCGCAACGTGGCAAGAATACTCCTGTAATTAGGGGGTTAATTAGGCAATGTGTAATTGATCGTTAATTAGAAACTATGTAAAATTTTATAAGCTTCCAAATTTAGAAACAAACGTGAATCTAGCTTGAAAACTAAAAAAGTTATGATGTGATTTTCCCAGCAACATGTTTTTGCCTCTGAACTAGAAAAAACGTACATTTTGAGCCTAATTATCTCGGTTCCTGTGAGAGATATCAAATTTTTGTCAACTGATAAATTGTTTATCATAATATCACCAACATGTTATTAGTTG</canonical>
            <polymorphic>TTCGTACTAGTCCGTTTTGTTTGAAATTTTCAGAAAATATAGAAAAAGTCTAGAACTCCATTTTTGTAGTTGACAACTTTTTTGAAAAATCGATATTTGAAGAGATAGAGAGACGCAGACAGTTAGAGCCACCTAGACTTTAAGCTGCCAAAGCTCAGCGCCTAGTAAGGCCAGAAACGTTGTTTTTCCTGCGAAAAACTTGGAATTTTAATATTAAAAATATGAATAATTAAATTTCCTATATTTTGTACTAAAAAAACACTTTTCTAGCTATACTAGGAGCCAAGATATGTCTATTTGAAGCTCAGGCAGCTAGAGACGCAGACAGCTAGATACTCTAACTCTCTGCGTCTCTATCTATCTAGATATAGATTTTTCTAAAAAGTTGTCAACTACAAAAATAAAGTGCTAGATTAGTTTTATAATTGCTAAAATTTTCAGAACAATCTAATAAGTACAAAGTGCTTATCCAGACACACAAAAATTGAAAATTTTCAAARTTTTCAAAAAAAAACTTTTTTTGAAAACTGTTTTAATTTGTTATAAATAGGAATCCTTTATAATCAACCCTCAATTAACTACCTACCGTACTGTCCACAGTCTGGAAGGGTATTCTGAATGCGTGATTGGTCGAATTCACGCCCGTAACGATCCACACACCAGCAGTGTCCGTCGTGGCATTGCTCAGGTTTGTAGAAGCCTTCGAGATCGCAACGTGGCAAGAATACTCCTGTAATTAGGGGGTTAATTAGGCAATGTGTAATTGATCGTTAATTAGAAACTATGTAAAATTTTATAAGCTTCCAAATTTAGAAACAAACGTGAATCTAGCTTGAAAACTAAAAAAGTTATGATGTGATTTTCCCAGCAACATGTTTTTGCCTCTGAACTAGAAAAAACGTACATTTTGAGCCTAATTATCTCGGTTCCTGTGAGAGATATCAAATTTTTGTCAACTGATAAATTGTTTATCATAATATCACCAACATGTTATTAGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>200 179 156 138 135 57 56 29 24 17 9</canonical_bands>
                <polymorphic_bands>200 179 156 144 138 57 56 29 24 17</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>191 179 109 101 61 50 38 38 36 29 24 24 18 17 17 15 12 11 9 9 7 5</canonical_bands>
                <polymorphic_bands>191 179 109 101 61 50 45 38 38 29 24 24 18 17 17 15 12 11 9 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATAGGCGACGTCTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>ATTGAGGGTTGATTATAAAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>682</pcr_amplicon_size>
		<canonical_amplicon>AATTTTCAAAAAAAAACTTTTTTTGAAAACTGTTTTAATTTGTTATAAATAGGAATCCTTTATAATCAACCCTCAAT</canonical_amplicon>
		<polymorphic_amplicon>ARTTTTCAAAAAAAAACTTTTTTTGAAAACTGTTTTAATTTGTTATAAATAGGAATCCTTTATAATCAACCCTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36377</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>58245</contig_pos>
        <strand>+</strand>
        <context>AAGCTGAAGC[A/G]ATCACACCAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCCTTGTGGCATGGTGGCTCGTGTCTCAAGTCGTCAGAGAAGCTGAAGC</left_flank>
        <right_flank>ATCACACCACTCATCGATAGAAATCGATCCATCGACATCCATGTCGTCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTGATAAATTTTTTATCATAAAATGAACAATATTTTATCAGTTGACAACTTTTTGATGTCTCTCACAGGAATCGAGATAATTGAACTCAAAGCTGACGGTTTGGGTGGGCTTCTATTGGGGAACAACGCAGCTCATTTTTTAGAAAAAACCGTTTCAAATTGCTTCAAAATGGGAATAATCTGAAAATTCAAAAATGAAAAACATCTTTTTGAATCCGACAATCGTAAAAATCTAGCAAAAAGATCCTAGACCCAATTGGCTGGGGCGCCTTTGGCGCGTTTTCCAAAATCTACCATTTTGCCCAGACACCCTCTTTAAATCACTTCAAAATTGGAATTTTTGAGAAATTCAAAAAGGTGAAAACTTCCAAAAACTTGTTAAATTTAAAATTAAGCTATTAAAAAATTTTTAGACTTGCCAACGTTATGTGGGTCCACTCCGTGCTTAGCCTTGTGGCATGGTGGCTCGTGTCTCAAGTCGTCAGAGAAGCTGAAGCAATCACACCACTCATCGATAGAAATCGATCCATCGACATCCATGTCGTCTGAAAAACGGAAAATTCCAAATTTTTAAAGAAAAAAAATCTGAAAATCTGAAAAGAAATTTTTGAAAAACATTTTTTTTTCAAATTTTTTCCAGTTTCCTTGACCTTGAATTTTGATTTTAAACTCAAAATGATAGAAATTTGAAGCTTTCTCTCATAATTTTCCTATTTCCACATTTAAAACTTACCGCACATATCGATGAACTCCTCAACACATGGCTCGTTTCCTCCACGCTCGAGTGGGCGGAGCTCTGTCTGAAAATTGTTATTTTTGAAGGCATCATTTGCAAACTGTAGTTTTTAATTATGTGAAATCTAAAAATCTAGATTCTGAGAATTCTAAAATAGGTTTCAAATTTCAAAAATATCAACTTTGAGGCAAGTTATGAGATTTTGAAATTTTCAAAAAAACATTCTGATCCTAAAATTTTTGAAGTCAATTTTTAAAACTAC</canonical>
            <polymorphic>AACTGATAAATTTTTTATCATAAAATGAACAATATTTTATCAGTTGACAACTTTTTGATGTCTCTCACAGGAATCGAGATAATTGAACTCAAAGCTGACGGTTTGGGTGGGCTTCTATTGGGGAACAACGCAGCTCATTTTTTAGAAAAAACCGTTTCAAATTGCTTCAAAATGGGAATAATCTGAAAATTCAAAAATGAAAAACATCTTTTTGAATCCGACAATCGTAAAAATCTAGCAAAAAGATCCTAGACCCAATTGGCTGGGGCGCCTTTGGCGCGTTTTCCAAAATCTACCATTTTGCCCAGACACCCTCTTTAAATCACTTCAAAATTGGAATTTTTGAGAAATTCAAAAAGGTGAAAACTTCCAAAAACTTGTTAAATTTAAAATTAAGCTATTAAAAAATTTTTAGACTTGCCAACGTTATGTGGGTCCACTCCGTGCTTAGCCTTGTGGCATGGTGGCTCGTGTCTCAAGTCGTCAGAGAAGCTGAAGCRATCACACCACTCATCGATAGAAATCGATCCATCGACATCCATGTCGTCTGAAAAACGGAAAATTCCAAATTTTTAAAGAAAAAAAATCTGAAAATCTGAAAAGAAATTTTTGAAAAACATTTTTTTTTCAAATTTTTTCCAGTTTCCTTGACCTTGAATTTTGATTTTAAACTCAAAATGATAGAAATTTGAAGCTTTCTCTCATAATTTTCCTATTTCCACATTTAAAACTTACCGCACATATCGATGAACTCCTCAACACATGGCTCGTTTCCTCCACGCTCGAGTGGGCGGAGCTCTGTCTGAAAATTGTTATTTTTGAAGGCATCATTTGCAAACTGTAGTTTTTAATTATGTGAAATCTAAAAATCTAGATTCTGAGAATTCTAAAATAGGTTTCAAATTTCAAAAATATCAACTTTGAGGCAAGTTATGAGATTTTGAAATTTTCAAAAAAACATTCTGATCCTAAAATTTTTGAAGTCAATTTTTAAAACTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTTCCAAAAACTTGTTAAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAAATTTCTTTTCAGATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAACTTCCAAAAACTTGTTAAATTTAAAATTAAGCTATTAAAAAATTTTTAGACTTGCCAACGTTATGTGGGTCCACTCCGTGCTTAGCCTTGTGGCATGGTGGCTCGTGTCTCAAGTCGTCAGAGAAGCTGAAGCAATCACACCACTCATCGATAGAAATCGATCCATCGACATCCATGTCGTCTGAAAAACGGAAAATTCCAAATTTTTAAAGAAAAAAAATCTGAAAATCTGAAAAGAAATTTTTG</canonical_amplicon>
		<polymorphic_amplicon>AAAACTTCCAAAAACTTGTTAAATTTAAAATTAAGCTATTAAAAAATTTTTAGACTTGCCAACGTTATGTGGGTCCACTCCGTGCTTAGCCTTGTGGCATGGTGGCTCGTGTCTCAAGTCGTCAGAGAAGCTGAAGCRATCACACCACTCATCGATAGAAATCGATCCATCGACATCCATGTCGTCTGAAAAACGGAAAATTCCAAATTTTTAAAGAAAAAAAATCTGAAAATCTGAAAAGAAATTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36378</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>78229</contig_pos>
        <strand></strand>
        <context>tttagatttt[G/T]ggctaaaaca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAGCTTTGAAATGAGCCTAAACACGACCCATTTCCTTCGATTTAGATTTT</left_flank>
        <right_flank>GGCTAAAACACGCAACGCACGACCGCGACACAGCTGAAATTTTTCTAGGT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATTTCCAGCTCTCCCGTTTCGGTGACGTCAAAGACGGGCGGTCTGTGCAGTTCACCGAATCCATCCGAATGAATGAAACCTTCACTCGTCGAACGCCATTCGATGCGGTTTTTATTGAGGTGGAAAACGAGAGACGTGTGGTTATTGACTCGTTGACAGTACATGATGGACGGTATGCAGACGTAGAAGAGGGAGGACATTGAGATTTATTGAATTTTTGAAAGTTTAATAAAAGTTATAACCTGTTTAGATAATACAATAATTATGAAAAGAAAGCTTTGAAATTCAATATTCTAAGGTTTTTTGCTCCAAAATGTGCCCAAAAATGACTTTTTTTTCGAATTTCTCTTTTTCAGAATTTTTCAGAGTCAACGTTTTATTTACTGTAACATTTTTCCGAGTGATTCAATTGACCCAAAAACTAGATTTCTCAATTTTTGAAGTTTTTAGCTTTGAAATGAGCCTAAACACGACCCATTTCCTTCGATTTAGATTTTGGGCTAAAACACGCAACGCACGACCGCGACACAGCTGAAATTTTTCTAGGTCATGACCTAATTTTTTTCTAGGTCATGACCTAATTTTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCATGACCTAATTTATTCTAGGTCAACTTTGAGCTCAATTATCTCGGTTCCTGTCAAAGATATCAAAAGTTATCAACTAATAAAATGTTCATCATGATATTAGCAACATTTTATCAATGTATCACTTTTTGATATCCTTTACAAGAAAGTTTTAAACAAGTTATGACGTGTTGAATTTGTATCAGTATTTATTAGCCACCATCTATACTGATTATAATTTTATTACTGTGTCATGTTTTTGGTAATTTCTCATTTTATATAAGATATAATTTTTTGGGAGAATGGGCTAAAATGACAAGAATTCGTAGTTTAAAAAATCAAGAGAAAAAACAGGATTTTATTCGGATTTTGTGTACTGG</canonical>
            <polymorphic>CTATTTCCAGCTCTCCCGTTTCGGTGACGTCAAAGACGGGCGGTCTGTGCAGTTCACCGAATCCATCCGAATGAATGAAACCTTCACTCGTCGAACGCCATTCGATGCGGTTTTTATTGAGGTGGAAAACGAGAGACGTGTGGTTATTGACTCGTTGACAGTACATGATGGACGGTATGCAGACGTAGAAGAGGGAGGACATTGAGATTTATTGAATTTTTGAAAGTTTAATAAAAGTTATAACCTGTTTAGATAATACAATAATTATGAAAAGAAAGCTTTGAAATTCAATATTCTAAGGTTTTTTGCTCCAAAATGTGCCCAAAAATGACTTTTTTTTCGAATTTCTCTTTTTCAGAATTTTTCAGAGTCAACGTTTTATTTACTGTAACATTTTTCCGAGTGATTCAATTGACCCAAAAACTAGATTTCTCAATTTTTGAAGTTTTTAGCTTTGAAATGAGCCTAAACACGACCCATTTCCTTCGATTTAGATTTTKGGCTAAAACACGCAACGCACGACCGCGACACAGCTGAAATTTTTCTAGGTCATGACCTAATTTTTTTCTAGGTCATGACCTAATTTTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCATGACCTAATTTATTCTAGGTCAACTTTGAGCTCAATTATCTCGGTTCCTGTCAAAGATATCAAAAGTTATCAACTAATAAAATGTTCATCATGATATTAGCAACATTTTATCAATGTATCACTTTTTGATATCCTTTACAAGAAAGTTTTAAACAAGTTATGACGTGTTGAATTTGTATCAGTATTTATTAGCCACCATCTATACTGATTATAATTTTATTACTGTGTCATGTTTTTGGTAATTTCTCATTTTATATAAGATATAATTTTTTGGGAGAATGGGCTAAAATGACAAGAATTCGTAGTTTAAAAAATCAAGAGAAAAAACAGGATTTTATTCGGATTTTGTGTACTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAACATTTTTCCGAGTGATTC</pcr_primer_p1>
		<pcr_primer_p2>GATACAAATTCAACACGTCATAA</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>GTAACATTTTTCCGAGTGATTCAATTGACCCAAAAACTAGATTTCTCAATTTTTGAAGTTTTTAGCTTTGAAATGAGCCTAAACACGACCCATTTCCTTCGATTTAGATTTTGGGCTAAAACACGCAACGCACGACCGCGACACAGCTGAAATTTTTCTAGGTCATGACCTAATTTTTTTCTAGGTCATGACCTAATTTTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCATGACCTAATTTATTCTAGGTCAACTTTGAGCTCAATTATCTCGGTTCCTGTCAAAGATATCAAAAGTTATCAACTAATAAAATGTTCATCATGATATTAGCAACATTTTATCAATGTATCACTTTTTGATATCCTTTACAAGAAAGTTTTAAACAAGTTATGACGTGTTGAATTTGTATC</canonical_amplicon>
		<polymorphic_amplicon>GTAACATTTTTCCGAGTGATTCAATTGACCCAAAAACTAGATTTCTCAATTTTTGAAGTTTTTAGCTTTGAAATGAGCCTAAACACGACCCATTTCCTTCGATTTAGATTTTKGGCTAAAACACGCAACGCACGACCGCGACACAGCTGAAATTTTTCTAGGTCATGACCTAATTTTTTTCTAGGTCATGACCTAATTTTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCATGACCTAATTTATTCTAGGTCAACTTTGAGCTCAATTATCTCGGTTCCTGTCAAAGATATCAAAAGTTATCAACTAATAAAATGTTCATCATGATATTAGCAACATTTTATCAATGTATCACTTTTTGATATCCTTTACAAGAAAGTTTTAAACAAGTTATGACGTGTTGAATTTGTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36379</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>78301</contig_pos>
        <strand></strand>
        <context>ttttttctag[G/A]tcatgaccta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACCGCGACACAGCTGAAATTTTTCTAGGTCATGACCTAATTTTTTTCTAG</left_flank>
        <right_flank>TCATGACCTAATTTTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATGAAACCTTCACTCGTCGAACGCCATTCGATGCGGTTTTTATTGAGGTGGAAAACGAGAGACGTGTGGTTATTGACTCGTTGACAGTACATGATGGACGGTATGCAGACGTAGAAGAGGGAGGACATTGAGATTTATTGAATTTTTGAAAGTTTAATAAAAGTTATAACCTGTTTAGATAATACAATAATTATGAAAAGAAAGCTTTGAAATTCAATATTCTAAGGTTTTTTGCTCCAAAATGTGCCCAAAAATGACTTTTTTTTCGAATTTCTCTTTTTCAGAATTTTTCAGAGTCAACGTTTTATTTACTGTAACATTTTTCCGAGTGATTCAATTGACCCAAAAACTAGATTTCTCAATTTTTGAAGTTTTTAGCTTTGAAATGAGCCTAAACACGACCCATTTCCTTCGATTTAGATTTTGGGCTAAAACACGCAACGCACGACCGCGACACAGCTGAAATTTTTCTAGGTCATGACCTAATTTTTTTCTAGGTCATGACCTAATTTTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCATGACCTAATTTATTCTAGGTCAACTTTGAGCTCAATTATCTCGGTTCCTGTCAAAGATATCAAAAGTTATCAACTAATAAAATGTTCATCATGATATTAGCAACATTTTATCAATGTATCACTTTTTGATATCCTTTACAAGAAAGTTTTAAACAAGTTATGACGTGTTGAATTTGTATCAGTATTTATTAGCCACCATCTATACTGATTATAATTTTATTACTGTGTCATGTTTTTGGTAATTTCTCATTTTATATAAGATATAATTTTTTGGGAGAATGGGCTAAAATGACAAGAATTCGTAGTTTAAAAAATCAAGAGAAAAAACAGGATTTTATTCGGATTTTGTGTACTGGATTAGCCAGACAAATGTAGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATTGAAAGGGAAAAAGG</canonical>
            <polymorphic>GAATGAAACCTTCACTCGTCGAACGCCATTCGATGCGGTTTTTATTGAGGTGGAAAACGAGAGACGTGTGGTTATTGACTCGTTGACAGTACATGATGGACGGTATGCAGACGTAGAAGAGGGAGGACATTGAGATTTATTGAATTTTTGAAAGTTTAATAAAAGTTATAACCTGTTTAGATAATACAATAATTATGAAAAGAAAGCTTTGAAATTCAATATTCTAAGGTTTTTTGCTCCAAAATGTGCCCAAAAATGACTTTTTTTTCGAATTTCTCTTTTTCAGAATTTTTCAGAGTCAACGTTTTATTTACTGTAACATTTTTCCGAGTGATTCAATTGACCCAAAAACTAGATTTCTCAATTTTTGAAGTTTTTAGCTTTGAAATGAGCCTAAACACGACCCATTTCCTTCGATTTAGATTTTGGGCTAAAACACGCAACGCACGACCGCGACACAGCTGAAATTTTTCTAGGTCATGACCTAATTTTTTTCTAGRTCATGACCTAATTTTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCATGACCTAATTTATTCTAGGTCAACTTTGAGCTCAATTATCTCGGTTCCTGTCAAAGATATCAAAAGTTATCAACTAATAAAATGTTCATCATGATATTAGCAACATTTTATCAATGTATCACTTTTTGATATCCTTTACAAGAAAGTTTTAAACAAGTTATGACGTGTTGAATTTGTATCAGTATTTATTAGCCACCATCTATACTGATTATAATTTTATTACTGTGTCATGTTTTTGGTAATTTCTCATTTTATATAAGATATAATTTTTTGGGAGAATGGGCTAAAATGACAAGAATTCGTAGTTTAAAAAATCAAGAGAAAAAACAGGATTTTATTCGGATTTTGTGTACTGGATTAGCCAGACAAATGTAGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATTGAAAGGGAAAAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAACATTTTTCCGAGTGATTC</pcr_primer_p1>
		<pcr_primer_p2>GATACAAATTCAACACGTCATAA</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>GTAACATTTTTCCGAGTGATTCAATTGACCCAAAAACTAGATTTCTCAATTTTTGAAGTTTTTAGCTTTGAAATGAGCCTAAACACGACCCATTTCCTTCGATTTAGATTTTGGGCTAAAACACGCAACGCACGACCGCGACACAGCTGAAATTTTTCTAGGTCATGACCTAATTTTTTTCTAGGTCATGACCTAATTTTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCATGACCTAATTTATTCTAGGTCAACTTTGAGCTCAATTATCTCGGTTCCTGTCAAAGATATCAAAAGTTATCAACTAATAAAATGTTCATCATGATATTAGCAACATTTTATCAATGTATCACTTTTTGATATCCTTTACAAGAAAGTTTTAAACAAGTTATGACGTGTTGAATTTGTATC</canonical_amplicon>
		<polymorphic_amplicon>GTAACATTTTTCCGAGTGATTCAATTGACCCAAAAACTAGATTTCTCAATTTTTGAAGTTTTTAGCTTTGAAATGAGCCTAAACACGACCCATTTCCTTCGATTTAGATTTTGGGCTAAAACACGCAACGCACGACCGCGACACAGCTGAAATTTTTCTAGGTCATGACCTAATTTTTTTCTAGRTCATGACCTAATTTTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCATGACCTAATTTATTCTAGGTCAACTTTGAGCTCAATTATCTCGGTTCCTGTCAAAGATATCAAAAGTTATCAACTAATAAAATGTTCATCATGATATTAGCAACATTTTATCAATGTATCACTTTTTGATATCCTTTACAAGAAAGTTTTAAACAAGTTATGACGTGTTGAATTTGTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36380</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>78489</contig_pos>
        <strand></strand>
        <context>ttttatcaat[G/T]tatcactttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTATCAACTAATAAAATGTTCATCATGATATTAGCAACATTTTATCAAT</left_flank>
        <right_flank>TATCACTTTTTGATATCCTTTACAAGAAAGTTTTAAACAAGTTATGACGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAATTATGAAAAGAAAGCTTTGAAATTCAATATTCTAAGGTTTTTTGCTCCAAAATGTGCCCAAAAATGACTTTTTTTTCGAATTTCTCTTTTTCAGAATTTTTCAGAGTCAACGTTTTATTTACTGTAACATTTTTCCGAGTGATTCAATTGACCCAAAAACTAGATTTCTCAATTTTTGAAGTTTTTAGCTTTGAAATGAGCCTAAACACGACCCATTTCCTTCGATTTAGATTTTGGGCTAAAACACGCAACGCACGACCGCGACACAGCTGAAATTTTTCTAGGTCATGACCTAATTTTTTTCTAGGTCATGACCTAATTTTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCATGACCTAATTTATTCTAGGTCAACTTTGAGCTCAATTATCTCGGTTCCTGTCAAAGATATCAAAAGTTATCAACTAATAAAATGTTCATCATGATATTAGCAACATTTTATCAATGTATCACTTTTTGATATCCTTTACAAGAAAGTTTTAAACAAGTTATGACGTGTTGAATTTGTATCAGTATTTATTAGCCACCATCTATACTGATTATAATTTTATTACTGTGTCATGTTTTTGGTAATTTCTCATTTTATATAAGATATAATTTTTTGGGAGAATGGGCTAAAATGACAAGAATTCGTAGTTTAAAAAATCAAGAGAAAAAACAGGATTTTATTCGGATTTTGTGTACTGGATTAGCCAGACAAATGTAGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATTGAAAGGGAAAAAGGTTTATTTACCAATGGGATCACCTTTCAAAACCCATTGTCCGCAGTCTGATCCTCAGCAGGAGTGGCGAGCCCTGTTCCAGTGATTCTGCCTTCCAGTGAACCGTAGAACACTGACCGACTAGACCACCAGACCATTGCTCACGCAGTCCTGCCTCTCAAACCTTGAACTGTGCTCGCAGTCTGATCCT</canonical>
            <polymorphic>ATAATTATGAAAAGAAAGCTTTGAAATTCAATATTCTAAGGTTTTTTGCTCCAAAATGTGCCCAAAAATGACTTTTTTTTCGAATTTCTCTTTTTCAGAATTTTTCAGAGTCAACGTTTTATTTACTGTAACATTTTTCCGAGTGATTCAATTGACCCAAAAACTAGATTTCTCAATTTTTGAAGTTTTTAGCTTTGAAATGAGCCTAAACACGACCCATTTCCTTCGATTTAGATTTTGGGCTAAAACACGCAACGCACGACCGCGACACAGCTGAAATTTTTCTAGGTCATGACCTAATTTTTTTCTAGGTCATGACCTAATTTTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCATGACCTAATTTATTCTAGGTCAACTTTGAGCTCAATTATCTCGGTTCCTGTCAAAGATATCAAAAGTTATCAACTAATAAAATGTTCATCATGATATTAGCAACATTTTATCAATKTATCACTTTTTGATATCCTTTACAAGAAAGTTTTAAACAAGTTATGACGTGTTGAATTTGTATCAGTATTTATTAGCCACCATCTATACTGATTATAATTTTATTACTGTGTCATGTTTTTGGTAATTTCTCATTTTATATAAGATATAATTTTTTGGGAGAATGGGCTAAAATGACAAGAATTCGTAGTTTAAAAAATCAAGAGAAAAAACAGGATTTTATTCGGATTTTGTGTACTGGATTAGCCAGACAAATGTAGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATTGAAAGGGAAAAAGGTTTATTTACCAATGGGATCACCTTTCAAAACCCATTGTCCGCAGTCTGATCCTCAGCAGGAGTGGCGAGCCCTGTTCCAGTGATTCTGCCTTCCAGTGAACCGTAGAACACTGACCGACTAGACCACCAGACCATTGCTCACGCAGTCCTGCCTCTCAAACCTTGAACTGTGCTCGCAGTCTGATCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAACATTTTTCCGAGTGATTC</pcr_primer_p1>
		<pcr_primer_p2>GATACAAATTCAACACGTCATAA</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>GTAACATTTTTCCGAGTGATTCAATTGACCCAAAAACTAGATTTCTCAATTTTTGAAGTTTTTAGCTTTGAAATGAGCCTAAACACGACCCATTTCCTTCGATTTAGATTTTGGGCTAAAACACGCAACGCACGACCGCGACACAGCTGAAATTTTTCTAGGTCATGACCTAATTTTTTTCTAGGTCATGACCTAATTTTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCATGACCTAATTTATTCTAGGTCAACTTTGAGCTCAATTATCTCGGTTCCTGTCAAAGATATCAAAAGTTATCAACTAATAAAATGTTCATCATGATATTAGCAACATTTTATCAATGTATCACTTTTTGATATCCTTTACAAGAAAGTTTTAAACAAGTTATGACGTGTTGAATTTGTATC</canonical_amplicon>
		<polymorphic_amplicon>GTAACATTTTTCCGAGTGATTCAATTGACCCAAAAACTAGATTTCTCAATTTTTGAAGTTTTTAGCTTTGAAATGAGCCTAAACACGACCCATTTCCTTCGATTTAGATTTTGGGCTAAAACACGCAACGCACGACCGCGACACAGCTGAAATTTTTCTAGGTCATGACCTAATTTTTTTCTAGGTCATGACCTAATTTTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCATGACCTAATTTATTCTAGGTCAACTTTGAGCTCAATTATCTCGGTTCCTGTCAAAGATATCAAAAGTTATCAACTAATAAAATGTTCATCATGATATTAGCAACATTTTATCAATKTATCACTTTTTGATATCCTTTACAAGAAAGTTTTAAACAAGTTATGACGTGTTGAATTTGTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36381</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>78742</contig_pos>
        <strand></strand>
        <context>tagccagaca[A/G]atgtagtctg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGAAAAAACAGGATTTTATTCGGATTTTGTGTACTGGATTAGCCAGACA</left_flank>
        <right_flank>ATGTAGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATTGAAAG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGCACGACCGCGACACAGCTGAAATTTTTCTAGGTCATGACCTAATTTTTTTCTAGGTCATGACCTAATTTTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCATGACCTAATTTATTCTAGGTCAACTTTGAGCTCAATTATCTCGGTTCCTGTCAAAGATATCAAAAGTTATCAACTAATAAAATGTTCATCATGATATTAGCAACATTTTATCAATGTATCACTTTTTGATATCCTTTACAAGAAAGTTTTAAACAAGTTATGACGTGTTGAATTTGTATCAGTATTTATTAGCCACCATCTATACTGATTATAATTTTATTACTGTGTCATGTTTTTGGTAATTTCTCATTTTATATAAGATATAATTTTTTGGGAGAATGGGCTAAAATGACAAGAATTCGTAGTTTAAAAAATCAAGAGAAAAAACAGGATTTTATTCGGATTTTGTGTACTGGATTAGCCAGACAAATGTAGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATTGAAAGGGAAAAAGGTTTATTTACCAATGGGATCACCTTTCAAAACCCATTGTCCGCAGTCTGATCCTCAGCAGGAGTGGCGAGCCCTGTTCCAGTGATTCTGCCTTCCAGTGAACCGTAGAACACTGACCGACTAGACCACCAGACCATTGCTCACGCAGTCCTGCCTCTCAAACCTTGAACTGTGCTCGCAGTCTGATCCTCAGCAGGAGTGGCGAGCCCTGTTCCAGTGATTCTGCCTTCCAGTGAACCGTAGAACACTGACCGACTAGACCACCAGCCCATTGCCCACGCAGACCTGCCTCCCAAACCTTGAACGCCAATATTGACTTTTCTAGCCCTTATATATGTGAGAGGAAGGGGCGGGGCTTAGCACACCTGCATTGGGGGCTGACCCCGTTTCCGGGAAACTCCGCCCCCTTTCTTCTTTTGGTACTGTGTGCTTCATTCGAATAG</canonical>
            <polymorphic>AACGCACGACCGCGACACAGCTGAAATTTTTCTAGGTCATGACCTAATTTTTTTCTAGGTCATGACCTAATTTTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCATGACCTGGAATTTTTCTAGGTCATGACCTAATTTATTCTAGGTCAACTTTGAGCTCAATTATCTCGGTTCCTGTCAAAGATATCAAAAGTTATCAACTAATAAAATGTTCATCATGATATTAGCAACATTTTATCAATGTATCACTTTTTGATATCCTTTACAAGAAAGTTTTAAACAAGTTATGACGTGTTGAATTTGTATCAGTATTTATTAGCCACCATCTATACTGATTATAATTTTATTACTGTGTCATGTTTTTGGTAATTTCTCATTTTATATAAGATATAATTTTTTGGGAGAATGGGCTAAAATGACAAGAATTCGTAGTTTAAAAAATCAAGAGAAAAAACAGGATTTTATTCGGATTTTGTGTACTGGATTAGCCAGACARATGTAGTCTGTTGATCCCTTTCGCCACGTAGAGGCTCAGTACATTGAAAGGGAAAAAGGTTTATTTACCAATGGGATCACCTTTCAAAACCCATTGTCCGCAGTCTGATCCTCAGCAGGAGTGGCGAGCCCTGTTCCAGTGATTCTGCCTTCCAGTGAACCGTAGAACACTGACCGACTAGACCACCAGACCATTGCTCACGCAGTCCTGCCTCTCAAACCTTGAACTGTGCTCGCAGTCTGATCCTCAGCAGGAGTGGCGAGCCCTGTTCCAGTGATTCTGCCTTCCAGTGAACCGTAGAACACTGACCGACTAGACCACCAGCCCATTGCCCACGCAGACCTGCCTCCCAAACCTTGAACGCCAATATTGACTTTTCTAGCCCTTATATATGTGAGAGGAAGGGGCGGGGCTTAGCACACCTGCATTGGGGGCTGACCCCGTTTCCGGGAAACTCCGCCCCCTTTCTTCTTTTGGTACTGTGTGCTTCATTCGAATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATGACAAGAATTCGTAGTTTA</pcr_primer_p1>
		<pcr_primer_p2>CTTATTGCATTTGAACCTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>793</pcr_amplicon_size>
		<canonical_amplicon>AAAATGACAAGAATTCGTAGTTTAAAAAATCAAGAGAAAAAACAGGATTTTATTCGGATTTTGTGTACTGGATTAGCCAGACAAATGTAGTCTGTTGATCCCTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAATGACAAGAATTCGTAGTTTAAAAAATCAAGAGAAAAAACAGGATTTTATTCGGATTTTGTGTACTGGATTAGCCAGACARATGTAGTCTGTTGATCCCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36382</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>80810</contig_pos>
        <strand>+</strand>
        <context>ASTTTYGTAA[C/T]TTTTTTGTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAA</left_flank>
        <right_flank>TTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGCTTCTTTTGGGAATCCTGACAAATTTGAATCATTTCTGGGGAATTATCGATTCCAACAACTTCATCAGCACCCCATTGAAGGAAGTCGAATGAGTAGTGACCTGGAAATTTAGATTATCTCGGTTACTGTAAAAGATATCAAAAAGTTGTCAACTGATAACATATAGCTGATAAAGTGATGAACAATTTATCTGTTAACAGATTTTTGATATCTCTCGCAAGAAATGAGATAAAAGGGCTTAAAGTTGAAAAGTCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTAATCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATATATCTCTATTCCCGTAAGAGATATCAAAAAGTGGTCAACTGATAAAG</canonical>
            <polymorphic>GAAGCTTCTTTTGGGAATCCTGACAAATTTGAATCATTTCTGGGGAATTATCGATTCCAACAACTTCATCAGCACCCCATTGAAGGAAGTCGAATGAGTAGTGACCTGGAAATTTAGATTATCTCGGTTACTGTAAAAGATATCAAAAAGTTGTCAACTGATAACATATAGCTGATAAAGTGATGAACAATTTATCTGTTAACAGATTTTTGATATCTCTCGCAAGAAATGAGATAAAAGGGCTTAAAGTTGAAAAGTCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAAYTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTAATCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATATATCTCTATTCCCGTAAGAGATATCAAAAAGTGGTCAACTGATAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>226 146 107 78 75 66 65 59 41 39 25 21 20 16 8 8</canonical_bands>
                <polymorphic_bands>226 146 141 107 78 65 59 41 39 25 21 20 16 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGTAGTGACCTGGAAATTTAG</pcr_primer_p1>
		<pcr_primer_p2>CAATTCTTGAGATTTTCTTATCAA</pcr_primer_p2>
		<pcr_amplicon_size>503</pcr_amplicon_size>
		<canonical_amplicon>TGAGTAGTGACCTGGAAATTTAGATTATCTCGGTTACTGTAAAAGATATCAAAAAGTTGTCAACTGATAACATATAGCTGATAAAGTGATGAACAATTTATCTGTTAACAGATTTTTGATATCTCTCGCAAGAAATGAGATAAAAGGGCTTAAAGTTGAAAAGTCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTG</canonical_amplicon>
		<polymorphic_amplicon>TGAGTAGTGACCTGGAAATTTAGATTATCTCGGTTACTGTAAAAGATATCAAAAAGTTGTCAACTGATAACATATAGCTGATAAAGTGATGAACAATTTATCTGTTAACAGATTTTTGATATCTCTCGCAAGAAATGAGATAAAAGGGCTTAAAGTTGAAAAGTCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAAYTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36383</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>80989</contig_pos>
        <strand></strand>
        <context>aactatctcg[C/G]ttyctataag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCG</left_flank>
        <right_flank>TTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGATGAACAATTTATCTGTTAACAGATTTTTGATATCTCTCGCAAGAAATGAGATAAAAGGGCTTAAAGTTGAAAAGTCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTAATCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATATATCTCTATTCCCGTAAGAGATATCAAAAAGTGGTCAACTGATAAAGTATAGCTGAAACTATGATAAACATTTTATCAGTTGAACATTTTTTTGATATCTCTTGTAGGAACCGAGATAATTGTGCTTAAAGTAGGTATAGTTACATTCCCTAAAAGCCCACCATTTCCACACCCGACATCTAGAACCTTCTTTCCTTCCAAAACATTTCCAATTGCTTTTTTAATT</canonical>
            <polymorphic>GTGATGAACAATTTATCTGTTAACAGATTTTTGATATCTCTCGCAAGAAATGAGATAAAAGGGCTTAAAGTTGAAAAGTCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGSTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTAATCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATATATCTCTATTCCCGTAAGAGATATCAAAAAGTGGTCAACTGATAAAGTATAGCTGAAACTATGATAAACATTTTATCAGTTGAACATTTTTTTGATATCTCTTGTAGGAACCGAGATAATTGTGCTTAAAGTAGGTATAGTTACATTCCCTAAAAGCCCACCATTTCCACACCCGACATCTAGAACCTTCTTTCCTTCCAAAACATTTCCAATTGCTTTTTTAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATAAGAAACGGATCAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TAGCTCAAAGTTGAAAAGTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>TGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTA</canonical_amplicon>
		<polymorphic_amplicon>TGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGSTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36384</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>80992</contig_pos>
        <strand></strand>
        <context>tatctcgstt[C/T]ctataagaga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTT</left_flank>
        <right_flank>CTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAACAATTTATCTGTTAACAGATTTTTGATATCTCTCGCAAGAAATGAGATAAAAGGGCTTAAAGTTGAAAAGTCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTAATCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATATATCTCTATTCCCGTAAGAGATATCAAAAAGTGGTCAACTGATAAAGTATAGCTGAAACTATGATAAACATTTTATCAGTTGAACATTTTTTTGATATCTCTTGTAGGAACCGAGATAATTGTGCTTAAAGTAGGTATAGTTACATTCCCTAAAAGCCCACCATTTCCACACCCGACATCTAGAACCTTCTTTCCTTCCAAAACATTTCCAATTGCTTTTTTAATTGTT</canonical>
            <polymorphic>ATGAACAATTTATCTGTTAACAGATTTTTGATATCTCTCGCAAGAAATGAGATAAAAGGGCTTAAAGTTGAAAAGTCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTYCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTAATCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATATATCTCTATTCCCGTAAGAGATATCAAAAAGTGGTCAACTGATAAAGTATAGCTGAAACTATGATAAACATTTTATCAGTTGAACATTTTTTTGATATCTCTTGTAGGAACCGAGATAATTGTGCTTAAAGTAGGTATAGTTACATTCCCTAAAAGCCCACCATTTCCACACCCGACATCTAGAACCTTCTTTCCTTCCAAAACATTTCCAATTGCTTTTTTAATTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATAAGAAACGGATCAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TAGCTCAAAGTTGAAAAGTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>TGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTA</canonical_amplicon>
		<polymorphic_amplicon>TGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTYCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36385</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>81007</contig_pos>
        <strand></strand>
        <context>aagagatatc[G/A]aaaatttgtc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATC</left_flank>
        <right_flank>AAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTAACAGATTTTTGATATCTCTCGCAAGAAATGAGATAAAAGGGCTTAAAGTTGAAAAGTCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTAATCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATATATCTCTATTCCCGTAAGAGATATCAAAAAGTGGTCAACTGATAAAGTATAGCTGAAACTATGATAAACATTTTATCAGTTGAACATTTTTTTGATATCTCTTGTAGGAACCGAGATAATTGTGCTTAAAGTAGGTATAGTTACATTCCCTAAAAGCCCACCATTTCCACACCCGACATCTAGAACCTTCTTTCCTTCCAAAACATTTCCAATTGCTTTTTTAATTGTTGGAGTGATAAGGTGA</canonical>
            <polymorphic>GTTAACAGATTTTTGATATCTCTCGCAAGAAATGAGATAAAAGGGCTTAAAGTTGAAAAGTCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCRAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTAATCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATATATCTCTATTCCCGTAAGAGATATCAAAAAGTGGTCAACTGATAAAGTATAGCTGAAACTATGATAAACATTTTATCAGTTGAACATTTTTTTGATATCTCTTGTAGGAACCGAGATAATTGTGCTTAAAGTAGGTATAGTTACATTCCCTAAAAGCCCACCATTTCCACACCCGACATCTAGAACCTTCTTTCCTTCCAAAACATTTCCAATTGCTTTTTTAATTGTTGGAGTGATAAGGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>291 259 242 134 74</canonical_bands>
                <polymorphic_bands>425 259 242 74</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATAAGAAACGGATCAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TAGCTCAAAGTTGAAAAGTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>TGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTA</canonical_amplicon>
		<polymorphic_amplicon>TGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36386</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>81020</contig_pos>
        <strand></strand>
        <context>aatttgtcta[G/C]taataaattg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTA</left_flank>
        <right_flank>TAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATATCTCTCGCAAGAAATGAGATAAAAGGGCTTAAAGTTGAAAAGTCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTAATCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATATATCTCTATTCCCGTAAGAGATATCAAAAAGTGGTCAACTGATAAAGTATAGCTGAAACTATGATAAACATTTTATCAGTTGAACATTTTTTTGATATCTCTTGTAGGAACCGAGATAATTGTGCTTAAAGTAGGTATAGTTACATTCCCTAAAAGCCCACCATTTCCACACCCGACATCTAGAACCTTCTTTCCTTCCAAAACATTTCCAATTGCTTTTTTAATTGTTGGAGTGATAAGGTGATCCCGTCCAAGCC</canonical>
            <polymorphic>TGATATCTCTCGCAAGAAATGAGATAAAAGGGCTTAAAGTTGAAAAGTCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTASTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTAATCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATATATCTCTATTCCCGTAAGAGATATCAAAAAGTGGTCAACTGATAAAGTATAGCTGAAACTATGATAAACATTTTATCAGTTGAACATTTTTTTGATATCTCTTGTAGGAACCGAGATAATTGTGCTTAAAGTAGGTATAGTTACATTCCCTAAAAGCCCACCATTTCCACACCCGACATCTAGAACCTTCTTTCCTTCCAAAACATTTCCAATTGCTTTTTTAATTGTTGGAGTGATAAGGTGATCCCGTCCAAGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>389 218 208 108 77</canonical_bands>
                <polymorphic_bands>607 208 108 77</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATAAGAAACGGATCAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TAGCTCAAAGTTGAAAAGTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>TGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTA</canonical_amplicon>
		<polymorphic_amplicon>TGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTASTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36387</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>81049</contig_pos>
        <strand></strand>
        <context>aatatcacct[G/A]tattttatca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCT</left_flank>
        <right_flank>TATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGCTTAAAGTTGAAAAGTCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTAATCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATATATCTCTATTCCCGTAAGAGATATCAAAAAGTGGTCAACTGATAAAGTATAGCTGAAACTATGATAAACATTTTATCAGTTGAACATTTTTTTGATATCTCTTGTAGGAACCGAGATAATTGTGCTTAAAGTAGGTATAGTTACATTCCCTAAAAGCCCACCATTTCCACACCCGACATCTAGAACCTTCTTTCCTTCCAAAACATTTCCAATTGCTTTTTTAATTGTTGGAGTGATAAGGTGATCCCGTCCAAGCCATTTTTGTTGGGCTTCCGTGTAGGCTTCA</canonical>
            <polymorphic>GGGCTTAAAGTTGAAAAGTCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTRTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTAATCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATATATCTCTATTCCCGTAAGAGATATCAAAAAGTGGTCAACTGATAAAGTATAGCTGAAACTATGATAAACATTTTATCAGTTGAACATTTTTTTGATATCTCTTGTAGGAACCGAGATAATTGTGCTTAAAGTAGGTATAGTTACATTCCCTAAAAGCCCACCATTTCCACACCCGACATCTAGAACCTTCTTTCCTTCCAAAACATTTCCAATTGCTTTTTTAATTGTTGGAGTGATAAGGTGATCCCGTCCAAGCCATTTTTGTTGGGCTTCCGTGTAGGCTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATAAGAAACGGATCAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TAGCTCAAAGTTGAAAAGTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>TGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTA</canonical_amplicon>
		<polymorphic_amplicon>TGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTRTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36388</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>81092</contig_pos>
        <strand></strand>
        <context>ataccgtaac[A/C]tagataaatc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAAC</left_flank>
        <right_flank>TAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTAATCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATATATCTCTATTCCCGTAAGAGATATCAAAAAGTGGTCAACTGATAAAGTATAGCTGAAACTATGATAAACATTTTATCAGTTGAACATTTTTTTGATATCTCTTGTAGGAACCGAGATAATTGTGCTTAAAGTAGGTATAGTTACATTCCCTAAAAGCCCACCATTTCCACACCCGACATCTAGAACCTTCTTTCCTTCCAAAACATTTCCAATTGCTTTTTTAATTGTTGGAGTGATAAGGTGATCCCGTCCAAGCCATTTTTGTTGGGCTTCCGTGTAGGCTTCAGATGGAAAATCGGGCATTTAAAGGGGCAAAAATGGGTGAAAAT</canonical>
            <polymorphic>CGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATTAATAAAATATAGCTAATAAGATGATAAATATTTTTTCAATTAACATTTTTTCAATATCTCTAATACGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGACACGGTATTTTGACAGATAACTCGTGAAAGTCACTCACTTTTGTAATTTTTTTGTGTTTCTACAGATATTAAATAAATAACAAACTTGATAAAACTATTAGAAAATAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACMTAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTAATCAGCGGAGCTATCCGGTCGGCTGCCGACCCCTTAACTTTGACTCGGTTTATCTCGGTTCCTAGAAGAGATATCGAAAATTTGTCAATATATCTCTATTCCCGTAAGAGATATCAAAAAGTGGTCAACTGATAAAGTATAGCTGAAACTATGATAAACATTTTATCAGTTGAACATTTTTTTGATATCTCTTGTAGGAACCGAGATAATTGTGCTTAAAGTAGGTATAGTTACATTCCCTAAAAGCCCACCATTTCCACACCCGACATCTAGAACCTTCTTTCCTTCCAAAACATTTCCAATTGCTTTTTTAATTGTTGGAGTGATAAGGTGATCCCGTCCAAGCCATTTTTGTTGGGCTTCCGTGTAGGCTTCAGATGGAAAATCGGGCATTTAAAGGGGCAAAAATGGGTGAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATAAGAAACGGATCAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TAGCTCAAAGTTGAAAAGTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>TGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACATAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTA</canonical_amplicon>
		<polymorphic_amplicon>TGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCCCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGCTTCCTATAAGAGATATCGAAAATTTGTCTAGTAATAAATTGCTTATCATAATATCACCTGTATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACMTAGATAAATCGGGTTAAAGTTAAAGGCCGGCAGCCGATAGGGTAGCTCATCCGGCAAGCTTGACTTTTCAACTTTGAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36389</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>82258</contig_pos>
        <strand></strand>
        <context>AGAAAAGTTT[A/G]GGTTGTCCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAGATATGCTGATTAGCAAGGAAAGATGTTAAAAGTTGAGAAAAGTTT</left_flank>
        <right_flank>GGTTGTCCAGACAACGGATTACGGTACTTCTGGGCAGGAAAATTGCTCAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACCTAATACTTGAACTTTGAGCCTATATATCTCGGCTCCTATGGAAGATATCTAAAAATTGTCAACTATTAAAATATAGCTGATATTTTGATAAATAATTTATCAGTTGACACATTTTTGAAATCTTTCACAGGAATCGAGATAATTGAGCTCAAAATTTTTGGTTTCCCCATTTCCTCCCCTAGCCCCGATTTTTTCCGCATCTTTCCAATTATTTCTGATGAGTGGAAGTCTAGGGCTAACATATCATATCACTAGTAGTAATATCCAGCTTATCTCTTCTGATAAGACCACAAAATGAACACATAACCAGTTGCCAGAAGCAGAAACGGTTAACGCGTAAGCGATCCGATAAAAAGAGACGAATGAGATTGATGGATTGTTTGCGGAAGAGATCGTCGGAGGGATATTTGATGACATGGAAAGTTTCTTGTCTCGTTTGGCAAGTGAAGATATGCTGATTAGCAAGGAAAGATGTTAAAAGTTGAGAAAAGTTTAGGTTGTCCAGACAACGGATTACGGTACTTCTGGGCAGGAAAATTGCTCATCCGGATGGACTCAAATTTAAGTCAAGTTATCTTGATTACTGTAAAAGATATCAAAAAGTAGTCAACTAATAAAACGTTTGTGATATTATGATAAACAATTTATTAGTTGACGAAATTTTGATATCTCTAATGCGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGTCACGGTATTTTGACAGATAATTTGTGAAAATCATTCAATTTTGTAAACTTTTTTGGGTTTTTACAGATATTAAATAAAATAACAAACTTGATAGAACTATTAGAAACTAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCTCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGGTTTCTATAAGAGATATCAAAAATTTGTCTACTAATAAATTGCTTATCA</canonical>
            <polymorphic>CAACCTAATACTTGAACTTTGAGCCTATATATCTCGGCTCCTATGGAAGATATCTAAAAATTGTCAACTATTAAAATATAGCTGATATTTTGATAAATAATTTATCAGTTGACACATTTTTGAAATCTTTCACAGGAATCGAGATAATTGAGCTCAAAATTTTTGGTTTCCCCATTTCCTCCCCTAGCCCCGATTTTTTCCGCATCTTTCCAATTATTTCTGATGAGTGGAAGTCTAGGGCTAACATATCATATCACTAGTAGTAATATCCAGCTTATCTCTTCTGATAAGACCACAAAATGAACACATAACCAGTTGCCAGAAGCAGAAACGGTTAACGCGTAAGCGATCCGATAAAAAGAGACGAATGAGATTGATGGATTGTTTGCGGAAGAGATCGTCGGAGGGATATTTGATGACATGGAAAGTTTCTTGTCTCGTTTGGCAAGTGAAGATATGCTGATTAGCAAGGAAAGATGTTAAAAGTTGAGAAAAGTTTRGGTTGTCCAGACAACGGATTACGGTACTTCTGGGCAGGAAAATTGCTCATCCGGATGGACTCAAATTTAAGTCAAGTTATCTTGATTACTGTAAAAGATATCAAAAAGTAGTCAACTAATAAAACGTTTGTGATATTATGATAAACAATTTATTAGTTGACGAAATTTTGATATCTCTAATGCGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGTCACGGTATTTTGACAGATAATTTGTGAAAATCATTCAATTTTGTAAACTTTTTTGGGTTTTTACAGATATTAAATAAAATAACAAACTTGATAGAACTATTAGAAACTAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCTCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGGTTTCTATAAGAGATATCAAAAATTTGTCTACTAATAAATTGCTTATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAAGTGAAGATATGCTGATTA</pcr_primer_p1>
		<pcr_primer_p2>TGTCAAAATACCGTGACAAAC</pcr_primer_p2>
		<pcr_amplicon_size>295</pcr_amplicon_size>
		<canonical_amplicon>GCAAGTGAAGATATGCTGATTAGCAAGGAAAGATGTTAAAAGTTGAGAAAAGTTTAGGTTGTCCAGACAACGGATTACGGTACTTCTGGGCAGGAAAATTGCTCATCCGGATGGACTCAAATTTAAGTCAAGTTATCTTGATTACTGTAAAAGATATCAAAAAGTAGTCAACTAATAAAACGTTTGTGATATTATGATAAACAATTTATTAGTTGACGAAATTTTGATATCTCTAATGCGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGTCACGGTATTTTGACA</canonical_amplicon>
		<polymorphic_amplicon>GCAAGTGAAGATATGCTGATTAGCAAGGAAAGATGTTAAAAGTTGAGAAAAGTTTRGGTTGTCCAGACAACGGATTACGGTACTTCTGGGCAGGAAAATTGCTCATCCGGATGGACTCAAATTTAAGTCAAGTTATCTTGATTACTGTAAAAGATATCAAAAAGTAGTCAACTAATAAAACGTTTGTGATATTATGATAAACAATTTATTAGTTGACGAAATTTTGATATCTCTAATGCGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGTCACGGTATTTTGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36390</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>82346</contig_pos>
        <strand></strand>
        <context>tatcttgatt[A/G]ctgtaaaaga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAATTGCTCATCCGGATGGACTCAAATTTAAGTCAAGTTATCTTGATT</left_flank>
        <right_flank>CTGTAAAAGATATCAAAAAGTAGTCAACTAATAAAACGTTTGTGATATTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGATAAATAATTTATCAGTTGACACATTTTTGAAATCTTTCACAGGAATCGAGATAATTGAGCTCAAAATTTTTGGTTTCCCCATTTCCTCCCCTAGCCCCGATTTTTTCCGCATCTTTCCAATTATTTCTGATGAGTGGAAGTCTAGGGCTAACATATCATATCACTAGTAGTAATATCCAGCTTATCTCTTCTGATAAGACCACAAAATGAACACATAACCAGTTGCCAGAAGCAGAAACGGTTAACGCGTAAGCGATCCGATAAAAAGAGACGAATGAGATTGATGGATTGTTTGCGGAAGAGATCGTCGGAGGGATATTTGATGACATGGAAAGTTTCTTGTCTCGTTTGGCAAGTGAAGATATGCTGATTAGCAAGGAAAGATGTTAAAAGTTGAGAAAAGTTTAGGTTGTCCAGACAACGGATTACGGTACTTCTGGGCAGGAAAATTGCTCATCCGGATGGACTCAAATTTAAGTCAAGTTATCTTGATTACTGTAAAAGATATCAAAAAGTAGTCAACTAATAAAACGTTTGTGATATTATGATAAACAATTTATTAGTTGACGAAATTTTGATATCTCTAATGCGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGTCACGGTATTTTGACAGATAATTTGTGAAAATCATTCAATTTTGTAAACTTTTTTGGGTTTTTACAGATATTAAATAAAATAACAAACTTGATAGAACTATTAGAAACTAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCTCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGGTTTCTATAAGAGATATCAAAAATTTGTCTACTAATAAATTGCTTATCATAATATCACCTATATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACCTAGATAAATCGGGTTAAAGTTAAGGCGCTTCTG</canonical>
            <polymorphic>TTTGATAAATAATTTATCAGTTGACACATTTTTGAAATCTTTCACAGGAATCGAGATAATTGAGCTCAAAATTTTTGGTTTCCCCATTTCCTCCCCTAGCCCCGATTTTTTCCGCATCTTTCCAATTATTTCTGATGAGTGGAAGTCTAGGGCTAACATATCATATCACTAGTAGTAATATCCAGCTTATCTCTTCTGATAAGACCACAAAATGAACACATAACCAGTTGCCAGAAGCAGAAACGGTTAACGCGTAAGCGATCCGATAAAAAGAGACGAATGAGATTGATGGATTGTTTGCGGAAGAGATCGTCGGAGGGATATTTGATGACATGGAAAGTTTCTTGTCTCGTTTGGCAAGTGAAGATATGCTGATTAGCAAGGAAAGATGTTAAAAGTTGAGAAAAGTTTAGGTTGTCCAGACAACGGATTACGGTACTTCTGGGCAGGAAAATTGCTCATCCGGATGGACTCAAATTTAAGTCAAGTTATCTTGATTRCTGTAAAAGATATCAAAAAGTAGTCAACTAATAAAACGTTTGTGATATTATGATAAACAATTTATTAGTTGACGAAATTTTGATATCTCTAATGCGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGTCACGGTATTTTGACAGATAATTTGTGAAAATCATTCAATTTTGTAAACTTTTTTGGGTTTTTACAGATATTAAATAAAATAACAAACTTGATAGAACTATTAGAAACTAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCTCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGGTTTCTATAAGAGATATCAAAAATTTGTCTACTAATAAATTGCTTATCATAATATCACCTATATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACCTAGATAAATCGGGTTAAAGTTAAGGCGCTTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>321 245 190 138 67 39</canonical_bands>
                <polymorphic_bands>321 245 205 190 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTCCAGACAACGGATTAC</pcr_primer_p1>
		<pcr_primer_p2>TCACAAATTATCTGTCAAAATACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGTCCAGACAACGGATTACGGTACTTCTGGGCAGGAAAATTGCTCATCCGGATGGACTCAAATTTAAGTCAAGTTATCTTGATTACTGTAAAAGATATCAAAAAGTAGTCAACTAATAAAACGTTTGTGATATTATGATAAACAATTTATTAGTTGACGAAATTTTGATATCTCTAATGCGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGTCACGGTATTTTGACAGATAATTTGTGA</canonical_amplicon>
		<polymorphic_amplicon>TTGTCCAGACAACGGATTACGGTACTTCTGGGCAGGAAAATTGCTCATCCGGATGGACTCAAATTTAAGTCAAGTTATCTTGATTRCTGTAAAAGATATCAAAAAGTAGTCAACTAATAAAACGTTTGTGATATTATGATAAACAATTTATTAGTTGACGAAATTTTGATATCTCTAATGCGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGTCACGGTATTTTGACAGATAATTTGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36391</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>82402</contig_pos>
        <strand></strand>
        <context>tattatgata[A/T]acaatttatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAGATATCAAAAAGTAGTCAACTAATAAAACGTTTGTGATATTATGATA</left_flank>
        <right_flank>ACAATTTATTAGTTGACGAAATTTTGATATCTCTAATGCGAACCGAGATA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTGAGCTCAAAATTTTTGGTTTCCCCATTTCCTCCCCTAGCCCCGATTTTTTCCGCATCTTTCCAATTATTTCTGATGAGTGGAAGTCTAGGGCTAACATATCATATCACTAGTAGTAATATCCAGCTTATCTCTTCTGATAAGACCACAAAATGAACACATAACCAGTTGCCAGAAGCAGAAACGGTTAACGCGTAAGCGATCCGATAAAAAGAGACGAATGAGATTGATGGATTGTTTGCGGAAGAGATCGTCGGAGGGATATTTGATGACATGGAAAGTTTCTTGTCTCGTTTGGCAAGTGAAGATATGCTGATTAGCAAGGAAAGATGTTAAAAGTTGAGAAAAGTTTAGGTTGTCCAGACAACGGATTACGGTACTTCTGGGCAGGAAAATTGCTCATCCGGATGGACTCAAATTTAAGTCAAGTTATCTTGATTACTGTAAAAGATATCAAAAAGTAGTCAACTAATAAAACGTTTGTGATATTATGATAAACAATTTATTAGTTGACGAAATTTTGATATCTCTAATGCGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGTCACGGTATTTTGACAGATAATTTGTGAAAATCATTCAATTTTGTAAACTTTTTTGGGTTTTTACAGATATTAAATAAAATAACAAACTTGATAGAACTATTAGAAACTAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCTCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGGTTTCTATAAGAGATATCAAAAATTTGTCTACTAATAAATTGCTTATCATAATATCACCTATATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACCTAGATAAATCGGGTTAAAGTTAAGGCGCTTCTGGGACATGTTGTCTGCGGTTTTTTTTAAATTGCTGAGCTTAAGAACGTCTTCACTTG</canonical>
            <polymorphic>TAATTGAGCTCAAAATTTTTGGTTTCCCCATTTCCTCCCCTAGCCCCGATTTTTTCCGCATCTTTCCAATTATTTCTGATGAGTGGAAGTCTAGGGCTAACATATCATATCACTAGTAGTAATATCCAGCTTATCTCTTCTGATAAGACCACAAAATGAACACATAACCAGTTGCCAGAAGCAGAAACGGTTAACGCGTAAGCGATCCGATAAAAAGAGACGAATGAGATTGATGGATTGTTTGCGGAAGAGATCGTCGGAGGGATATTTGATGACATGGAAAGTTTCTTGTCTCGTTTGGCAAGTGAAGATATGCTGATTAGCAAGGAAAGATGTTAAAAGTTGAGAAAAGTTTAGGTTGTCCAGACAACGGATTACGGTACTTCTGGGCAGGAAAATTGCTCATCCGGATGGACTCAAATTTAAGTCAAGTTATCTTGATTACTGTAAAAGATATCAAAAAGTAGTCAACTAATAAAACGTTTGTGATATTATGATAWACAATTTATTAGTTGACGAAATTTTGATATCTCTAATGCGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGTCACGGTATTTTGACAGATAATTTGTGAAAATCATTCAATTTTGTAAACTTTTTTGGGTTTTTACAGATATTAAATAAAATAACAAACTTGATAGAACTATTAGAAACTAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCTCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGGTTTCTATAAGAGATATCAAAAATTTGTCTACTAATAAATTGCTTATCATAATATCACCTATATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACCTAGATAAATCGGGTTAAAGTTAAGGCGCTTCTGGGACATGTTGTCTGCGGTTTTTTTTAAATTGCTGAGCTTAAGAACGTCTTCACTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTCCAGACAACGGATTAC</pcr_primer_p1>
		<pcr_primer_p2>TCACAAATTATCTGTCAAAATACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGTCCAGACAACGGATTACGGTACTTCTGGGCAGGAAAATTGCTCATCCGGATGGACTCAAATTTAAGTCAAGTTATCTTGATTACTGTAAAAGATATCAAAAAGTAGTCAACTAATAAAACGTTTGTGATATTATGATAAACAATTTATTAGTTGACGAAATTTTGATATCTCTAATGCGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGTCACGGTATTTTGACAGATAATTTGTGA</canonical_amplicon>
		<polymorphic_amplicon>TTGTCCAGACAACGGATTACGGTACTTCTGGGCAGGAAAATTGCTCATCCGGATGGACTCAAATTTAAGTCAAGTTATCTTGATTACTGTAAAAGATATCAAAAAGTAGTCAACTAATAAAACGTTTGTGATATTATGATAWACAATTTATTAGTTGACGAAATTTTGATATCTCTAATGCGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGTCACGGTATTTTGACAGATAATTTGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36392</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>82663</contig_pos>
        <strand>+</strand>
        <context>CGAAAACGGC[C/T]CAAAGCACCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGC</left_flank>
        <right_flank>CAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGATATTTGATGACATGGAAAGTTTCTTGTCTCGTTTGGCAAGTGAAGATATGCTGATTAGCAAGGAAAGATGTTAAAAGTTGAGAAAAGTTTAGGTTGTCCAGACAACGGATTACGGTACTTCTGGGCAGGAAAATTGCTCATCCGGATGGACTCAAATTTAAGTCAAGTTATCTTGATTACTGTAAAAGATATCAAAAAGTAGTCAACTAATAAAACGTTTGTGATATTATGATAAACAATTTATTAGTTGACGAAATTTTGATATCTCTAATGCGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGTCACGGTATTTTGACAGATAATTTGTGAAAATCATTCAATTTTGTAAACTTTTTTGGGTTTTTACAGATATTAAATAAAATAACAAACTTGATAGAACTATTAGAAACTAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCTCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGGTTTCTATAAGAGATATCAAAAATTTGTCTACTAATAAATTGCTTATCATAATATCACCTATATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACCTAGATAAATCGGGTTAAAGTTAAGGCGCTTCTGGGACATGTTGTCTGCGGTTTTTTTTAAATTGCTGAGCTTAAGAACGTCTTCACTTGATGCTTTAGTTCCGGCTGACTTCATTTTAAGCTGACTTTACCGAGTATAAAGGGACAAATACTTATTTGGGAGTTCCCTTTACGTCAGCTCCTTGTAAATCAGTACTAAATTGAACGTTCCTTTTACACCATTTTCAACTTTAGAGGAAAAAAAAACTTCCCGACGAAATCTCAAAATCTTGCCATTCTCATCTGCCATAAACATCATTCTTGCATCTTCATTATTCACACTTTCAGATAACAATCACACTCAACAACAGA</canonical>
            <polymorphic>GGGATATTTGATGACATGGAAAGTTTCTTGTCTCGTTTGGCAAGTGAAGATATGCTGATTAGCAAGGAAAGATGTTAAAAGTTGAGAAAAGTTTAGGTTGTCCAGACAACGGATTACGGTACTTCTGGGCAGGAAAATTGCTCATCCGGATGGACTCAAATTTAAGTCAAGTTATCTTGATTACTGTAAAAGATATCAAAAAGTAGTCAACTAATAAAACGTTTGTGATATTATGATAAACAATTTATTAGTTGACGAAATTTTGATATCTCTAATGCGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGTCACGGTATTTTGACAGATAATTTGTGAAAATCATTCAATTTTGTAAACTTTTTTGGGTTTTTACAGATATTAAATAAAATAACAAACTTGATAGAACTATTAGAAACTAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCYCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGGTTTCTATAAGAGATATCAAAAATTTGTCTACTAATAAATTGCTTATCATAATATCACCTATATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACCTAGATAAATCGGGTTAAAGTTAAGGCGCTTCTGGGACATGTTGTCTGCGGTTTTTTTTAAATTGCTGAGCTTAAGAACGTCTTCACTTGATGCTTTAGTTCCGGCTGACTTCATTTTAAGCTGACTTTACCGAGTATAAAGGGACAAATACTTATTTGGGAGTTCCCTTTACGTCAGCTCCTTGTAAATCAGTACTAAATTGAACGTTCCTTTTACACCATTTTCAACTTTAGAGGAAAAAAAAACTTCCCGACGAAATCTCAAAATCTTGCCATTCTCATCTGCCATAAACATCATTCTTGCATCTTCATTATTCACACTTTCAGATAACAATCACACTCAACAACAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>295 203 193 173 57 35 28 16</canonical_bands>
                <polymorphic_bands>295 231 193 173 57 35 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTAATTGATAAGAAAATCTCAAGAA</pcr_primer_p1>
		<pcr_primer_p2>GTGAAGACGTTCTTAAGCTCAG</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>ACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCTCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGGTTTCTATAAGAGATATCAAAAATTTGTCTACTAATAAATTGCTTATCATAATATCACCTATATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACCTAGATAAATCGGGTTAAAGTTAAGGCGCTTCTGGGACATGTTGTCTGCGGTTTTTTTTAAATTGCTGAGCTTAAGAACGTCTTCAC</canonical_amplicon>
		<polymorphic_amplicon>ACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCYCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGGTTTCTATAAGAGATATCAAAAATTTGTCTACTAATAAATTGCTTATCATAATATCACCTATATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACCTAGATAAATCGGGTTAAAGTTAAGGCGCTTCTGGGACATGTTGTCTGCGGTTTTTTTTAAATTGCTGAGCTTAAGAACGTCTTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36393</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>82682</contig_pos>
        <strand>+</strand>
        <context>CATTTACCAG[C/T]AGGGAagctt</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAACGGATCAAAAACGGGTCGAAAACGGCTCAAAGCACCATTTACCAG</left_flank>
        <right_flank>AGGGAAGCTTTAACTCAAACTATCTCGGTTTCTATAAGAGATATCAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTTTCTTGTCTCGTTTGGCAAGTGAAGATATGCTGATTAGCAAGGAAAGATGTTAAAAGTTGAGAAAAGTTTAGGTTGTCCAGACAACGGATTACGGTACTTCTGGGCAGGAAAATTGCTCATCCGGATGGACTCAAATTTAAGTCAAGTTATCTTGATTACTGTAAAAGATATCAAAAAGTAGTCAACTAATAAAACGTTTGTGATATTATGATAAACAATTTATTAGTTGACGAAATTTTGATATCTCTAATGCGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGTCACGGTATTTTGACAGATAATTTGTGAAAATCATTCAATTTTGTAAACTTTTTTGGGTTTTTACAGATATTAAATAAAATAACAAACTTGATAGAACTATTAGAAACTAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCTCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGGTTTCTATAAGAGATATCAAAAATTTGTCTACTAATAAATTGCTTATCATAATATCACCTATATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACCTAGATAAATCGGGTTAAAGTTAAGGCGCTTCTGGGACATGTTGTCTGCGGTTTTTTTTAAATTGCTGAGCTTAAGAACGTCTTCACTTGATGCTTTAGTTCCGGCTGACTTCATTTTAAGCTGACTTTACCGAGTATAAAGGGACAAATACTTATTTGGGAGTTCCCTTTACGTCAGCTCCTTGTAAATCAGTACTAAATTGAACGTTCCTTTTACACCATTTTCAACTTTAGAGGAAAAAAAAACTTCCCGACGAAATCTCAAAATCTTGCCATTCTCATCTGCCATAAACATCATTCTTGCATCTTCATTATTCACACTTTCAGATAACAATCACACTCAACAACAGACAATTGAAAGTGTCAAGAG</canonical>
            <polymorphic>AAAGTTTCTTGTCTCGTTTGGCAAGTGAAGATATGCTGATTAGCAAGGAAAGATGTTAAAAGTTGAGAAAAGTTTAGGTTGTCCAGACAACGGATTACGGTACTTCTGGGCAGGAAAATTGCTCATCCGGATGGACTCAAATTTAAGTCAAGTTATCTTGATTACTGTAAAAGATATCAAAAAGTAGTCAACTAATAAAACGTTTGTGATATTATGATAAACAATTTATTAGTTGACGAAATTTTGATATCTCTAATGCGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGTCACGGTATTTTGACAGATAATTTGTGAAAATCATTCAATTTTGTAAACTTTTTTGGGTTTTTACAGATATTAAATAAAATAACAAACTTGATAGAACTATTAGAAACTAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCTCAAAGCACCATTTACCAGYAGGGAAGCTTTAACTCAAACTATCTCGGTTTCTATAAGAGATATCAAAAATTTGTCTACTAATAAATTGCTTATCATAATATCACCTATATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACCTAGATAAATCGGGTTAAAGTTAAGGCGCTTCTGGGACATGTTGTCTGCGGTTTTTTTTAAATTGCTGAGCTTAAGAACGTCTTCACTTGATGCTTTAGTTCCGGCTGACTTCATTTTAAGCTGACTTTACCGAGTATAAAGGGACAAATACTTATTTGGGAGTTCCCTTTACGTCAGCTCCTTGTAAATCAGTACTAAATTGAACGTTCCTTTTACACCATTTTCAACTTTAGAGGAAAAAAAAACTTCCCGACGAAATCTCAAAATCTTGCCATTCTCATCTGCCATAAACATCATTCTTGCATCTTCATTATTCACACTTTCAGATAACAATCACACTCAACAACAGACAATTGAAAGTGTCAAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATAAGAAACGGATCAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GTGAAGACGTTCTTAAGCTCAG</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>TGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCTCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGGTTTCTATAAGAGATATCAAAAATTTGTCTACTAATAAATTGCTTATCATAATATCACCTATATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACCTAGATAAATCGGGTTAAAGTTAAGGCGCTTCTGGGACATGTTGTCTGCGGTTTTTTTTAAATTGCTGAGCTTAAGAACGTCTTCAC</canonical_amplicon>
		<polymorphic_amplicon>TGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCTCAAAGCACCATTTACCAGYAGGGAAGCTTTAACTCAAACTATCTCGGTTTCTATAAGAGATATCAAAAATTTGTCTACTAATAAATTGCTTATCATAATATCACCTATATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACCTAGATAAATCGGGTTAAAGTTAAGGCGCTTCTGGGACATGTTGTCTGCGGTTTTTTTTAAATTGCTGAGCTTAAGAACGTCTTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36394</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>82822</contig_pos>
        <strand></strand>
        <context>cctagataaa[T/C]cgggttaaag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACCTAGATAAA</left_flank>
        <right_flank>CGGGTTAAAGTTAAGGCGCTTCTGGGACATGTTGTCTGCGGTTTTTTTTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTAAGTCAAGTTATCTTGATTACTGTAAAAGATATCAAAAAGTAGTCAACTAATAAAACGTTTGTGATATTATGATAAACAATTTATTAGTTGACGAAATTTTGATATCTCTAATGCGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGTCACGGTATTTTGACAGATAATTTGTGAAAATCATTCAATTTTGTAAACTTTTTTGGGTTTTTACAGATATTAAATAAAATAACAAACTTGATAGAACTATTAGAAACTAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCTCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGGTTTCTATAAGAGATATCAAAAATTTGTCTACTAATAAATTGCTTATCATAATATCACCTATATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACCTAGATAAATCGGGTTAAAGTTAAGGCGCTTCTGGGACATGTTGTCTGCGGTTTTTTTTAAATTGCTGAGCTTAAGAACGTCTTCACTTGATGCTTTAGTTCCGGCTGACTTCATTTTAAGCTGACTTTACCGAGTATAAAGGGACAAATACTTATTTGGGAGTTCCCTTTACGTCAGCTCCTTGTAAATCAGTACTAAATTGAACGTTCCTTTTACACCATTTTCAACTTTAGAGGAAAAAAAAACTTCCCGACGAAATCTCAAAATCTTGCCATTCTCATCTGCCATAAACATCATTCTTGCATCTTCATTATTCACACTTTCAGATAACAATCACACTCAACAACAGACAATTGAAAGTGTCAAGAGATCCTTCATGTTGATCATCTGAAAAACTAAGACGTTCTCAGTTTGGCATACCAGTTAACCACAAACACCATATACTGATGCAATCAGTGTGATAAGACGGGTCGACAGCGACGTCAGAGGATTCAGAAGGCGTCGCTGCT</canonical>
            <polymorphic>ATTTAAGTCAAGTTATCTTGATTACTGTAAAAGATATCAAAAAGTAGTCAACTAATAAAACGTTTGTGATATTATGATAAACAATTTATTAGTTGACGAAATTTTGATATCTCTAATGCGAACCGAGATAATTGAGCTCAAAGTGCACTTGGGCGTTTGTCACGGTATTTTGACAGATAATTTGTGAAAATCATTCAATTTTGTAAACTTTTTTGGGTTTTTACAGATATTAAATAAAATAACAAACTTGATAGAACTATTAGAAACTAATAAATTTACTAATTGATAAGAAAATCTCAAGAATTGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCTCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGGTTTCTATAAGAGATATCAAAAATTTGTCTACTAATAAATTGCTTATCATAATATCACCTATATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACCTAGATAAAYCGGGTTAAAGTTAAGGCGCTTCTGGGACATGTTGTCTGCGGTTTTTTTTAAATTGCTGAGCTTAAGAACGTCTTCACTTGATGCTTTAGTTCCGGCTGACTTCATTTTAAGCTGACTTTACCGAGTATAAAGGGACAAATACTTATTTGGGAGTTCCCTTTACGTCAGCTCCTTGTAAATCAGTACTAAATTGAACGTTCCTTTTACACCATTTTCAACTTTAGAGGAAAAAAAAACTTCCCGACGAAATCTCAAAATCTTGCCATTCTCATCTGCCATAAACATCATTCTTGCATCTTCATTATTCACACTTTCAGATAACAATCACACTCAACAACAGACAATTGAAAGTGTCAAGAGATCCTTCATGTTGATCATCTGAAAAACTAAGACGTTCTCAGTTTGGCATACCAGTTAACCACAAACACCATATACTGATGCAATCAGTGTGATAAGACGGGTCGACAGCGACGTCAGAGGATTCAGAAGGCGTCGCTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATAAGAAACGGATCAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GTGAAGACGTTCTTAAGCTCAG</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>TGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCTCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGGTTTCTATAAGAGATATCAAAAATTTGTCTACTAATAAATTGCTTATCATAATATCACCTATATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACCTAGATAAATCGGGTTAAAGTTAAGGCGCTTCTGGGACATGTTGTCTGCGGTTTTTTTTAAATTGCTGAGCTTAAGAACGTCTTCAC</canonical_amplicon>
		<polymorphic_amplicon>TGATAAGAAACGGATCAAAAACGGGTCGAAAACGGCTCAAAGCACCATTTACCAGTAGGGAAGCTTTAACTCAAACTATCTCGGTTTCTATAAGAGATATCAAAAATTTGTCTACTAATAAATTGCTTATCATAATATCACCTATATTTTATCAGTTGACCACTTCTTGATATCTCATACCGTAACCTAGATAAAYCGGGTTAAAGTTAAGGCGCTTCTGGGACATGTTGTCTGCGGTTTTTTTTAAATTGCTGAGCTTAAGAACGTCTTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36395</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>83279</contig_pos>
        <strand>+</strand>
        <context>GTGTGATAAG[A/G]CGGGTCGACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATACCAGTTAACCACAAACACCATATACTGATGCAATCAGTGTGATAAG</left_flank>
        <right_flank>CGGGTCGACAGCGACGTCAGAGGATTCAGAAGGCGTCGCTGCTTCGAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTGACCACTTCTTGATATCTCATACCGTAACCTAGATAAATCGGGTTAAAGTTAAGGCGCTTCTGGGACATGTTGTCTGCGGTTTTTTTTAAATTGCTGAGCTTAAGAACGTCTTCACTTGATGCTTTAGTTCCGGCTGACTTCATTTTAAGCTGACTTTACCGAGTATAAAGGGACAAATACTTATTTGGGAGTTCCCTTTACGTCAGCTCCTTGTAAATCAGTACTAAATTGAACGTTCCTTTTACACCATTTTCAACTTTAGAGGAAAAAAAAACTTCCCGACGAAATCTCAAAATCTTGCCATTCTCATCTGCCATAAACATCATTCTTGCATCTTCATTATTCACACTTTCAGATAACAATCACACTCAACAACAGACAATTGAAAGTGTCAAGAGATCCTTCATGTTGATCATCTGAAAAACTAAGACGTTCTCAGTTTGGCATACCAGTTAACCACAAACACCATATACTGATGCAATCAGTGTGATAAGACGGGTCGACAGCGACGTCAGAGGATTCAGAAGGCGTCGCTGCTTCGAATACATTCAAACTCGTATACAAGTGATTGGCATATCTCTATCTATCTATTCGCAAAAAAGGGAAGGAGAGAAAGAACTGGTTACTTTTGACTATGGAATGAGATGAGTGGGGGGAGGGGAGGATGGTGGGAGGGTTTATAAATACAAGATATCTAAGCATTTGCCATTTTCATTTTGAAGCAGTGACACCCACCGACTAGGCAAAAGCAGAAAATGGTAAGCTTTTTTAATTGATAAGCTAGAATTGTGTGCATCCCTTTTTTTAACTGCCTTAAGGTTTAAGGTTTAAGGCTTTAAGACTGCCTCAAGGTCCAACAATTTCTGTAACTATCAAAATAAGGATTTTCTAAAATCATAGGTCATTTTAAGCTAGCGTAAACAATTAGAGTCAAATAGAAGTTGTTAACGTTGAATCAATTTTTCTCCGTTCCTGTAAGAGATAGAAATAAAATG</canonical>
            <polymorphic>AGTTGACCACTTCTTGATATCTCATACCGTAACCTAGATAAATCGGGTTAAAGTTAAGGCGCTTCTGGGACATGTTGTCTGCGGTTTTTTTTAAATTGCTGAGCTTAAGAACGTCTTCACTTGATGCTTTAGTTCCGGCTGACTTCATTTTAAGCTGACTTTACCGAGTATAAAGGGACAAATACTTATTTGGGAGTTCCCTTTACGTCAGCTCCTTGTAAATCAGTACTAAATTGAACGTTCCTTTTACACCATTTTCAACTTTAGAGGAAAAAAAAACTTCCCGACGAAATCTCAAAATCTTGCCATTCTCATCTGCCATAAACATCATTCTTGCATCTTCATTATTCACACTTTCAGATAACAATCACACTCAACAACAGACAATTGAAAGTGTCAAGAGATCCTTCATGTTGATCATCTGAAAAACTAAGACGTTCTCAGTTTGGCATACCAGTTAACCACAAACACCATATACTGATGCAATCAGTGTGATAAGRCGGGTCGACAGCGACGTCAGAGGATTCAGAAGGCGTCGCTGCTTCGAATACATTCAAACTCGTATACAAGTGATTGGCATATCTCTATCTATCTATTCGCAAAAAAGGGAAGGAGAGAAAGAACTGGTTACTTTTGACTATGGAATGAGATGAGTGGGGGGAGGGGAGGATGGTGGGAGGGTTTATAAATACAAGATATCTAAGCATTTGCCATTTTCATTTTGAAGCAGTGACACCCACCGACTAGGCAAAAGCAGAAAATGGTAAGCTTTTTTAATTGATAAGCTAGAATTGTGTGCATCCCTTTTTTTAACTGCCTTAAGGTTTAAGGTTTAAGGCTTTAAGACTGCCTCAAGGTCCAACAATTTCTGTAACTATCAAAATAAGGATTTTCTAAAATCATAGGTCATTTTAAGCTAGCGTAAACAATTAGAGTCAAATAGAAGTTGTTAACGTTGAATCAATTTTTCTCCGTTCCTGTAAGAGATAGAAATAAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAATTGAAAGTGTCAAGAGAT</pcr_primer_p1>
		<pcr_primer_p2>AAGTAACCAGTTCTTTCTCTCCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GACAATTGAAAGTGTCAAGAGATCCTTCATGTTGATCATCTGAAAAACTAAGACGTTCTCAGTTTGGCATACCAGTTAACCACAAACACCATATACTGATGCAATCAGTGTGATAAGACGGGTCGACAGCGACGTCAGAGGATTCAGAAGGCGTCGCTGCTTCGAATACATTCAAACTCGTATACAAGTGATTGGCATATCTCTATCTATCTATTCGCAAAAAAGGGAAGGAGAGAAAGAACTGGTTACTT</canonical_amplicon>
		<polymorphic_amplicon>GACAATTGAAAGTGTCAAGAGATCCTTCATGTTGATCATCTGAAAAACTAAGACGTTCTCAGTTTGGCATACCAGTTAACCACAAACACCATATACTGATGCAATCAGTGTGATAAGRCGGGTCGACAGCGACGTCAGAGGATTCAGAAGGCGTCGCTGCTTCGAATACATTCAAACTCGTATACAAGTGATTGGCATATCTCTATCTATCTATTCGCAAAAAAGGGAAGGAGAGAAAGAACTGGTTACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36396</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>84609</contig_pos>
        <strand>+</strand>
        <context>GCGGATGCGG[A/G]AGAAAGAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACTTCCCCCTCCACCACCACCACCGTGTGGCGGAGGATGCGGATGCGG</left_flank>
        <right_flank>AGAAAGAAGAGAGCAGCCAGCGAGGATTCCAAGTGTACCGATCCAGAGTT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTCAGTTCCTTTGAAAGATATCAAAAAGTTTTCAACTGATAAAATAAAGCTGATATTATGATAAAAATTTTATTAATTGACTACTTTTTGATATATTCTACAAGAACCGAGATATATCAGCTCAAATTTGGGTGTGCTCCTATTAGAGGAAATTCGGTAACTAAGCTCCCCGTGAACCGATTTTCATGATTTTATTTAGATCAACAGATAATTTTCATGAGAAACAGAATATTTAAAAAAACCCCCTAAGGACAAGAGAAACTATTCCAGAGATTCGTGGTAACCCTAGCCCTGATCATCGTCTCCACCCAAGCCTTCCTCTTCCCGGGAGGTGGAGGTGGTGGTGGATGCGGAGGCGGATGTGGAGGCGGATGTGGAGGAGGTGGTGGTGGAGGATGTCTGCCAACTCTCGGATGCTCAGTTATCTCATTCAACGTCCCAACACTCAAACTTCCCCCTCCACCACCACCACCGTGTGGCGGAGGATGCGGATGCGGAAGAAAGAAGAGAGCAGCCAGCGAGGATTCCAAGTGTACCGATCCAGAGTTGAGAAAGATCATCTTGAATGTGAGTGAGAGGTTTTTTTTAGTATAGTAGAGGTCTTTGAGCGTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAATGAGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAATCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCTAGAAGCGGTTGACTTGTAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTGGGTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGACAAGCTCAGGCTTTTTAACTTTGAATCAAATTATCTCGGTTACTGTAAGAGATATTAAAAAGTAATTAACTAGTAAAATGTAGCTGATGTTGTGATAAACATTTTATCAGT</canonical>
            <polymorphic>ATCTCAGTTCCTTTGAAAGATATCAAAAAGTTTTCAACTGATAAAATAAAGCTGATATTATGATAAAAATTTTATTAATTGACTACTTTTTGATATATTCTACAAGAACCGAGATATATCAGCTCAAATTTGGGTGTGCTCCTATTAGAGGAAATTCGGTAACTAAGCTCCCCGTGAACCGATTTTCATGATTTTATTTAGATCAACAGATAATTTTCATGAGAAACAGAATATTTAAAAAAACCCCCTAAGGACAAGAGAAACTATTCCAGAGATTCGTGGTAACCCTAGCCCTGATCATCGTCTCCACCCAAGCCTTCCTCTTCCCGGGAGGTGGAGGTGGTGGTGGATGCGGAGGCGGATGTGGAGGCGGATGTGGAGGAGGTGGTGGTGGAGGATGTCTGCCAACTCTCGGATGCTCAGTTATCTCATTCAACGTCCCAACACTCAAACTTCCCCCTCCACCACCACCACCGTGTGGCGGAGGATGCGGATGCGGRAGAAAGAAGAGAGCAGCCAGCGAGGATTCCAAGTGTACCGATCCAGAGTTGAGAAAGATCATCTTGAATGTGAGTGAGAGGTTTTTTTTAGTATAGTAGAGGTCTTTGAGCGTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAATGAGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAATCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCTAGAAGCGGTTGACTTGTAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTGGGTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGACAAGCTCAGGCTTTTTAACTTTGAATCAAATTATCTCGGTTACTGTAAGAGATATTAAAAAGTAATTAACTAGTAAAATGTAGCTGATGTTGTGATAAACATTTTATCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGCTCAGTTATCTCATTCAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCTACAGATTACGCTCAA</pcr_primer_p2>
		<pcr_amplicon_size>214</pcr_amplicon_size>
		<canonical_amplicon>GATGCTCAGTTATCTCATTCAACGTCCCAACACTCAAACTTCCCCCTCCACCACCACCACCGTGTGGCGGAGGATGCGGATGCGGAAGAAAGAAGAGAGCAGCCAGCGAGGATTCCAAGTGTACCGATCCAGAGTTGAGAAAGATCATCTTGAATGTGAGTGAGAGGTTTTTTTTAGTATAGTAGAGGTCTTTGAGCGTAATCTGTAGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>GATGCTCAGTTATCTCATTCAACGTCCCAACACTCAAACTTCCCCCTCCACCACCACCACCGTGTGGCGGAGGATGCGGATGCGGRAGAAAGAAGAGAGCAGCCAGCGAGGATTCCAAGTGTACCGATCCAGAGTTGAGAAAGATCATCTTGAATGTGAGTGAGAGGTTTTTTTTAGTATAGTAGAGGTCTTTGAGCGTAATCTGTAGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36397</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>84624</contig_pos>
        <strand>+</strand>
        <context>AGAAGAGAGC[A/C]GCCAGCGAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCACCACCACCGTGTGGCGGAGGATGCGGATGCGGAAGAAAGAAGAGAGC</left_flank>
        <right_flank>GCCAGCGAGGATTCCAAGTGTACCGATCCAGAGTTGAGAAAGATCATCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGATATCAAAAAGTTTTCAACTGATAAAATAAAGCTGATATTATGATAAAAATTTTATTAATTGACTACTTTTTGATATATTCTACAAGAACCGAGATATATCAGCTCAAATTTGGGTGTGCTCCTATTAGAGGAAATTCGGTAACTAAGCTCCCCGTGAACCGATTTTCATGATTTTATTTAGATCAACAGATAATTTTCATGAGAAACAGAATATTTAAAAAAACCCCCTAAGGACAAGAGAAACTATTCCAGAGATTCGTGGTAACCCTAGCCCTGATCATCGTCTCCACCCAAGCCTTCCTCTTCCCGGGAGGTGGAGGTGGTGGTGGATGCGGAGGCGGATGTGGAGGCGGATGTGGAGGAGGTGGTGGTGGAGGATGTCTGCCAACTCTCGGATGCTCAGTTATCTCATTCAACGTCCCAACACTCAAACTTCCCCCTCCACCACCACCACCGTGTGGCGGAGGATGCGGATGCGGAAGAAAGAAGAGAGCAGCCAGCGAGGATTCCAAGTGTACCGATCCAGAGTTGAGAAAGATCATCTTGAATGTGAGTGAGAGGTTTTTTTTAGTATAGTAGAGGTCTTTGAGCGTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAATGAGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAATCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCTAGAAGCGGTTGACTTGTAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTGGGTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGACAAGCTCAGGCTTTTTAACTTTGAATCAAATTATCTCGGTTACTGTAAGAGATATTAAAAAGTAATTAACTAGTAAAATGTAGCTGATGTTGTGATAAACATTTTATCAGTTGACAACTTTTTGAT</canonical>
            <polymorphic>AAAGATATCAAAAAGTTTTCAACTGATAAAATAAAGCTGATATTATGATAAAAATTTTATTAATTGACTACTTTTTGATATATTCTACAAGAACCGAGATATATCAGCTCAAATTTGGGTGTGCTCCTATTAGAGGAAATTCGGTAACTAAGCTCCCCGTGAACCGATTTTCATGATTTTATTTAGATCAACAGATAATTTTCATGAGAAACAGAATATTTAAAAAAACCCCCTAAGGACAAGAGAAACTATTCCAGAGATTCGTGGTAACCCTAGCCCTGATCATCGTCTCCACCCAAGCCTTCCTCTTCCCGGGAGGTGGAGGTGGTGGTGGATGCGGAGGCGGATGTGGAGGCGGATGTGGAGGAGGTGGTGGTGGAGGATGTCTGCCAACTCTCGGATGCTCAGTTATCTCATTCAACGTCCCAACACTCAAACTTCCCCCTCCACCACCACCACCGTGTGGCGGAGGATGCGGATGCGGAAGAAAGAAGAGAGCMGCCAGCGAGGATTCCAAGTGTACCGATCCAGAGTTGAGAAAGATCATCTTGAATGTGAGTGAGAGGTTTTTTTTAGTATAGTAGAGGTCTTTGAGCGTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAATGAGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAATCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCTAGAAGCGGTTGACTTGTAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTGGGTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGACAAGCTCAGGCTTTTTAACTTTGAATCAAATTATCTCGGTTACTGTAAGAGATATTAAAAAGTAATTAACTAGTAAAATGTAGCTGATGTTGTGATAAACATTTTATCAGTTGACAACTTTTTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>201 168 158 124 73 71 45 43 36 26 24 13 12 6</canonical_bands>
                <polymorphic_bands>369 158 124 73 71 45 43 36 26 24 13 12 6</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>498 352 150</canonical_bands>
                <polymorphic_bands>850 150</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATGCTCAGTTATCTCATTCAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTCTACAGATTACGCTCAA</pcr_primer_p2>
		<pcr_amplicon_size>214</pcr_amplicon_size>
		<canonical_amplicon>GATGCTCAGTTATCTCATTCAACGTCCCAACACTCAAACTTCCCCCTCCACCACCACCACCGTGTGGCGGAGGATGCGGATGCGGAAGAAAGAAGAGAGCAGCCAGCGAGGATTCCAAGTGTACCGATCCAGAGTTGAGAAAGATCATCTTGAATGTGAGTGAGAGGTTTTTTTTAGTATAGTAGAGGTCTTTGAGCGTAATCTGTAGAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>GATGCTCAGTTATCTCATTCAACGTCCCAACACTCAAACTTCCCCCTCCACCACCACCACCGTGTGGCGGAGGATGCGGATGCGGAAGAAAGAAGAGAGCMGCCAGCGAGGATTCCAAGTGTACCGATCCAGAGTTGAGAAAGATCATCTTGAATGTGAGTGAGAGGTTTTTTTTAGTATAGTAGAGGTCTTTGAGCGTAATCTGTAGAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36398</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>84810</contig_pos>
        <strand>+</strand>
        <context>TTATCAGCAA[C/T]CCCTTGTagc</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAA</left_flank>
        <right_flank>CCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCTAG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAACAGATAATTTTCATGAGAAACAGAATATTTAAAAAAACCCCCTAAGGACAAGAGAAACTATTCCAGAGATTCGTGGTAACCCTAGCCCTGATCATCGTCTCCACCCAAGCCTTCCTCTTCCCGGGAGGTGGAGGTGGTGGTGGATGCGGAGGCGGATGTGGAGGCGGATGTGGAGGAGGTGGTGGTGGAGGATGTCTGCCAACTCTCGGATGCTCAGTTATCTCATTCAACGTCCCAACACTCAAACTTCCCCCTCCACCACCACCACCGTGTGGCGGAGGATGCGGATGCGGAAGAAAGAAGAGAGCAGCCAGCGAGGATTCCAAGTGTACCGATCCAGAGTTGAGAAAGATCATCTTGAATGTGAGTGAGAGGTTTTTTTTAGTATAGTAGAGGTCTTTGAGCGTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAATGAGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAATCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCTAGAAGCGGTTGACTTGTAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTGGGTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGACAAGCTCAGGCTTTTTAACTTTGAATCAAATTATCTCGGTTACTGTAAGAGATATTAAAAAGTAATTAACTAGTAAAATGTAGCTGATGTTGTGATAAACATTTTATCAGTTGACAACTTTTTGATAACTTTCACAGGAAACGAGAAATGTAAGTTATTTTACAATAAGCTGGAGAAAATTGGTTAAAGGGGTTTACTACAGTATGAAATTTTTATGTAATTTGAAATTAAATTCTTGCAGGGAGTCCGCACCACCACCACCGAATCCCGAGACAACATTGTCGCTAGTCTCAAGGAGAAATACGCTGGAGT</canonical>
            <polymorphic>ATCAACAGATAATTTTCATGAGAAACAGAATATTTAAAAAAACCCCCTAAGGACAAGAGAAACTATTCCAGAGATTCGTGGTAACCCTAGCCCTGATCATCGTCTCCACCCAAGCCTTCCTCTTCCCGGGAGGTGGAGGTGGTGGTGGATGCGGAGGCGGATGTGGAGGCGGATGTGGAGGAGGTGGTGGTGGAGGATGTCTGCCAACTCTCGGATGCTCAGTTATCTCATTCAACGTCCCAACACTCAAACTTCCCCCTCCACCACCACCACCGTGTGGCGGAGGATGCGGATGCGGAAGAAAGAAGAGAGCAGCCAGCGAGGATTCCAAGTGTACCGATCCAGAGTTGAGAAAGATCATCTTGAATGTGAGTGAGAGGTTTTTTTTAGTATAGTAGAGGTCTTTGAGCGTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAATGAGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAAYCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCTAGAAGCGGTTGACTTGTAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTGGGTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGACAAGCTCAGGCTTTTTAACTTTGAATCAAATTATCTCGGTTACTGTAAGAGATATTAAAAAGTAATTAACTAGTAAAATGTAGCTGATGTTGTGATAAACATTTTATCAGTTGACAACTTTTTGATAACTTTCACAGGAAACGAGAAATGTAAGTTATTTTACAATAAGCTGGAGAAAATTGGTTAAAGGGGTTTACTACAGTATGAAATTTTTATGTAATTTGAAATTAAATTCTTGCAGGGAGTCCGCACCACCACCACCGAATCCCGAGACAACATTGTCGCTAGTCTCAAGGAGAAATACGCTGGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCGTAATCTGTAGAAAAATTGA</pcr_primer_p1>
		<pcr_primer_p2>GTCGGATGAGCTACACTGTT</pcr_primer_p2>
		<pcr_amplicon_size>282</pcr_amplicon_size>
		<canonical_amplicon>AGCGTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAATGAGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAATCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCTAGAAGCGGTTGACTTGTAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTGGGTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGAC</canonical_amplicon>
		<polymorphic_amplicon>AGCGTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAATGAGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAAYCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCTAGAAGCGGTTGACTTGTAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTGGGTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36399</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>84858</contig_pos>
        <strand></strand>
        <context>aaaagttttc[T/A]agaagcggtt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTC</left_flank>
        <right_flank>AGAAGCGGTTGACTTGTAAAATGTTGCTGATATTATGATAAACATTTTAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGGACAAGAGAAACTATTCCAGAGATTCGTGGTAACCCTAGCCCTGATCATCGTCTCCACCCAAGCCTTCCTCTTCCCGGGAGGTGGAGGTGGTGGTGGATGCGGAGGCGGATGTGGAGGCGGATGTGGAGGAGGTGGTGGTGGAGGATGTCTGCCAACTCTCGGATGCTCAGTTATCTCATTCAACGTCCCAACACTCAAACTTCCCCCTCCACCACCACCACCGTGTGGCGGAGGATGCGGATGCGGAAGAAAGAAGAGAGCAGCCAGCGAGGATTCCAAGTGTACCGATCCAGAGTTGAGAAAGATCATCTTGAATGTGAGTGAGAGGTTTTTTTTAGTATAGTAGAGGTCTTTGAGCGTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAATGAGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAATCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCTAGAAGCGGTTGACTTGTAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTGGGTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGACAAGCTCAGGCTTTTTAACTTTGAATCAAATTATCTCGGTTACTGTAAGAGATATTAAAAAGTAATTAACTAGTAAAATGTAGCTGATGTTGTGATAAACATTTTATCAGTTGACAACTTTTTGATAACTTTCACAGGAAACGAGAAATGTAAGTTATTTTACAATAAGCTGGAGAAAATTGGTTAAAGGGGTTTACTACAGTATGAAATTTTTATGTAATTTGAAATTAAATTCTTGCAGGGAGTCCGCACCACCACCACCGAATCCCGAGACAACATTGTCGCTAGTCTCAAGGAGAAATACGCTGGAGTCAGGTAAATAACTGGAGGGAATTTCAATTTTTCAATTTTTGTCTAAAG</canonical>
            <polymorphic>AAGGACAAGAGAAACTATTCCAGAGATTCGTGGTAACCCTAGCCCTGATCATCGTCTCCACCCAAGCCTTCCTCTTCCCGGGAGGTGGAGGTGGTGGTGGATGCGGAGGCGGATGTGGAGGCGGATGTGGAGGAGGTGGTGGTGGAGGATGTCTGCCAACTCTCGGATGCTCAGTTATCTCATTCAACGTCCCAACACTCAAACTTCCCCCTCCACCACCACCACCGTGTGGCGGAGGATGCGGATGCGGAAGAAAGAAGAGAGCAGCCAGCGAGGATTCCAAGTGTACCGATCCAGAGTTGAGAAAGATCATCTTGAATGTGAGTGAGAGGTTTTTTTTAGTATAGTAGAGGTCTTTGAGCGTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAATGAGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAATCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCWAGAAGCGGTTGACTTGTAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTGGGTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGACAAGCTCAGGCTTTTTAACTTTGAATCAAATTATCTCGGTTACTGTAAGAGATATTAAAAAGTAATTAACTAGTAAAATGTAGCTGATGTTGTGATAAACATTTTATCAGTTGACAACTTTTTGATAACTTTCACAGGAAACGAGAAATGTAAGTTATTTTACAATAAGCTGGAGAAAATTGGTTAAAGGGGTTTACTACAGTATGAAATTTTTATGTAATTTGAAATTAAATTCTTGCAGGGAGTCCGCACCACCACCACCGAATCCCGAGACAACATTGTCGCTAGTCTCAAGGAGAAATACGCTGGAGTCAGGTAAATAACTGGAGGGAATTTCAATTTTTCAATTTTTGTCTAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>460 215 211 75 39</canonical_bands>
                <polymorphic_bands>671 215 75 39</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCGTAATCTGTAGAAAAATTGA</pcr_primer_p1>
		<pcr_primer_p2>GTCGGATGAGCTACACTGTT</pcr_primer_p2>
		<pcr_amplicon_size>282</pcr_amplicon_size>
		<canonical_amplicon>AGCGTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAATGAGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAATCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCTAGAAGCGGTTGACTTGTAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTGGGTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGAC</canonical_amplicon>
		<polymorphic_amplicon>AGCGTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAATGAGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAATCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCWAGAAGCGGTTGACTTGTAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTGGGTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36400</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>84874</contig_pos>
        <strand></strand>
        <context>cggttgactt[G/A]taaaatgttg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCTAGAAGCGGTTGACTT</left_flank>
        <right_flank>TAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCCAGAGATTCGTGGTAACCCTAGCCCTGATCATCGTCTCCACCCAAGCCTTCCTCTTCCCGGGAGGTGGAGGTGGTGGTGGATGCGGAGGCGGATGTGGAGGCGGATGTGGAGGAGGTGGTGGTGGAGGATGTCTGCCAACTCTCGGATGCTCAGTTATCTCATTCAACGTCCCAACACTCAAACTTCCCCCTCCACCACCACCACCGTGTGGCGGAGGATGCGGATGCGGAAGAAAGAAGAGAGCAGCCAGCGAGGATTCCAAGTGTACCGATCCAGAGTTGAGAAAGATCATCTTGAATGTGAGTGAGAGGTTTTTTTTAGTATAGTAGAGGTCTTTGAGCGTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAATGAGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAATCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCTAGAAGCGGTTGACTTGTAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTGGGTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGACAAGCTCAGGCTTTTTAACTTTGAATCAAATTATCTCGGTTACTGTAAGAGATATTAAAAAGTAATTAACTAGTAAAATGTAGCTGATGTTGTGATAAACATTTTATCAGTTGACAACTTTTTGATAACTTTCACAGGAAACGAGAAATGTAAGTTATTTTACAATAAGCTGGAGAAAATTGGTTAAAGGGGTTTACTACAGTATGAAATTTTTATGTAATTTGAAATTAAATTCTTGCAGGGAGTCCGCACCACCACCACCGAATCCCGAGACAACATTGTCGCTAGTCTCAAGGAGAAATACGCTGGAGTCAGGTAAATAACTGGAGGGAATTTCAATTTTTCAATTTTTGTCTAAAGAGCTAACTTGCTTGAT</canonical>
            <polymorphic>ATTCCAGAGATTCGTGGTAACCCTAGCCCTGATCATCGTCTCCACCCAAGCCTTCCTCTTCCCGGGAGGTGGAGGTGGTGGTGGATGCGGAGGCGGATGTGGAGGCGGATGTGGAGGAGGTGGTGGTGGAGGATGTCTGCCAACTCTCGGATGCTCAGTTATCTCATTCAACGTCCCAACACTCAAACTTCCCCCTCCACCACCACCACCGTGTGGCGGAGGATGCGGATGCGGAAGAAAGAAGAGAGCAGCCAGCGAGGATTCCAAGTGTACCGATCCAGAGTTGAGAAAGATCATCTTGAATGTGAGTGAGAGGTTTTTTTTAGTATAGTAGAGGTCTTTGAGCGTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAATGAGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAATCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCTAGAAGCGGTTGACTTRTAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTGGGTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGACAAGCTCAGGCTTTTTAACTTTGAATCAAATTATCTCGGTTACTGTAAGAGATATTAAAAAGTAATTAACTAGTAAAATGTAGCTGATGTTGTGATAAACATTTTATCAGTTGACAACTTTTTGATAACTTTCACAGGAAACGAGAAATGTAAGTTATTTTACAATAAGCTGGAGAAAATTGGTTAAAGGGGTTTACTACAGTATGAAATTTTTATGTAATTTGAAATTAAATTCTTGCAGGGAGTCCGCACCACCACCACCGAATCCCGAGACAACATTGTCGCTAGTCTCAAGGAGAAATACGCTGGAGTCAGGTAAATAACTGGAGGGAATTTCAATTTTTCAATTTTTGTCTAAAGAGCTAACTTGCTTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCGTAATCTGTAGAAAAATTGA</pcr_primer_p1>
		<pcr_primer_p2>GTCGGATGAGCTACACTGTT</pcr_primer_p2>
		<pcr_amplicon_size>282</pcr_amplicon_size>
		<canonical_amplicon>AGCGTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAATGAGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAATCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCTAGAAGCGGTTGACTTGTAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTGGGTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGAC</canonical_amplicon>
		<polymorphic_amplicon>AGCGTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAATGAGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAATCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCTAGAAGCGGTTGACTTRTAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTGGGTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36401</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>84955</contig_pos>
        <strand></strand>
        <context>agataaattg[G/A]gttaaagtta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTG</left_flank>
        <right_flank>GTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGACAAGCTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGATGCGGAGGCGGATGTGGAGGCGGATGTGGAGGAGGTGGTGGTGGAGGATGTCTGCCAACTCTCGGATGCTCAGTTATCTCATTCAACGTCCCAACACTCAAACTTCCCCCTCCACCACCACCACCGTGTGGCGGAGGATGCGGATGCGGAAGAAAGAAGAGAGCAGCCAGCGAGGATTCCAAGTGTACCGATCCAGAGTTGAGAAAGATCATCTTGAATGTGAGTGAGAGGTTTTTTTTAGTATAGTAGAGGTCTTTGAGCGTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAATGAGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAATCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCTAGAAGCGGTTGACTTGTAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTGGGTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGACAAGCTCAGGCTTTTTAACTTTGAATCAAATTATCTCGGTTACTGTAAGAGATATTAAAAAGTAATTAACTAGTAAAATGTAGCTGATGTTGTGATAAACATTTTATCAGTTGACAACTTTTTGATAACTTTCACAGGAAACGAGAAATGTAAGTTATTTTACAATAAGCTGGAGAAAATTGGTTAAAGGGGTTTACTACAGTATGAAATTTTTATGTAATTTGAAATTAAATTCTTGCAGGGAGTCCGCACCACCACCACCGAATCCCGAGACAACATTGTCGCTAGTCTCAAGGAGAAATACGCTGGAGTCAGGTAAATAACTGGAGGGAATTTCAATTTTTCAATTTTTGTCTAAAGAGCTAACTTGCTTGATGATTAACCAGTTTTAAGCTATGGTTTAGAAGGTACTGAGCGCTTCTCTTTAGTTTTATCAACCTATCAGCTAAAAATCGCT</canonical>
            <polymorphic>TGGATGCGGAGGCGGATGTGGAGGCGGATGTGGAGGAGGTGGTGGTGGAGGATGTCTGCCAACTCTCGGATGCTCAGTTATCTCATTCAACGTCCCAACACTCAAACTTCCCCCTCCACCACCACCACCGTGTGGCGGAGGATGCGGATGCGGAAGAAAGAAGAGAGCAGCCAGCGAGGATTCCAAGTGTACCGATCCAGAGTTGAGAAAGATCATCTTGAATGTGAGTGAGAGGTTTTTTTTAGTATAGTAGAGGTCTTTGAGCGTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAATGAGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAATCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCTAGAAGCGGTTGACTTGTAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTGRGTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGACAAGCTCAGGCTTTTTAACTTTGAATCAAATTATCTCGGTTACTGTAAGAGATATTAAAAAGTAATTAACTAGTAAAATGTAGCTGATGTTGTGATAAACATTTTATCAGTTGACAACTTTTTGATAACTTTCACAGGAAACGAGAAATGTAAGTTATTTTACAATAAGCTGGAGAAAATTGGTTAAAGGGGTTTACTACAGTATGAAATTTTTATGTAATTTGAAATTAAATTCTTGCAGGGAGTCCGCACCACCACCACCGAATCCCGAGACAACATTGTCGCTAGTCTCAAGGAGAAATACGCTGGAGTCAGGTAAATAACTGGAGGGAATTTCAATTTTTCAATTTTTGTCTAAAGAGCTAACTTGCTTGATGATTAACCAGTTTTAAGCTATGGTTTAGAAGGTACTGAGCGCTTCTCTTTAGTTTTATCAACCTATCAGCTAAAAATCGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGTCTTTGAGCGTAATCTGTA</pcr_primer_p1>
		<pcr_primer_p2>CAATTTTCTCCAGCTTATTGTAA</pcr_primer_p2>
		<pcr_amplicon_size>472</pcr_amplicon_size>
		<canonical_amplicon>AGGTCTTTGAGCGTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAATGAGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAATCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCTAGAAGCGGTTGACTTGTAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTGGGTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGACAAGCTCAGGCTTTTTAACTTTGAATCAAATTATCTCGGTTACTGTAAGAGATATTAAAAAGTAATTAACTAGTAAAATGTAGCTGATGTTGTGATAAACATTTTATCAGTTGACAACTTTTTGATAACTTTCACAGGAAACGAGAAATGTAAGTTATTTTACAATAAGCTGGAGAAAATTG</canonical_amplicon>
		<polymorphic_amplicon>AGGTCTTTGAGCGTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAATGAGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAATCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCTAGAAGCGGTTGACTTGTAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTGRGTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGACAAGCTCAGGCTTTTTAACTTTGAATCAAATTATCTCGGTTACTGTAAGAGATATTAAAAAGTAATTAACTAGTAAAATGTAGCTGATGTTGTGATAAACATTTTATCAGTTGACAACTTTTTGATAACTTTCACAGGAAACGAGAAATGTAAGTTATTTTACAATAAGCTGGAGAAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36402</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>85126</contig_pos>
        <strand></strand>
        <context>ctttttgata[A/T]ctttcacagg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGTAGCTGATGTTGTGATAAACATTTTATCAGTTGACAACTTTTTGATA</left_flank>
        <right_flank>CTTTCACAGGAAACGAGAAATGTAAGTTATTTTACAATAAGCTGGAGAAA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCGAGGATTCCAAGTGTACCGATCCAGAGTTGAGAAAGATCATCTTGAATGTGAGTGAGAGGTTTTTTTTAGTATAGTAGAGGTCTTTGAGCGTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAATGAGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAATCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCTAGAAGCGGTTGACTTGTAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTGGGTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGACAAGCTCAGGCTTTTTAACTTTGAATCAAATTATCTCGGTTACTGTAAGAGATATTAAAAAGTAATTAACTAGTAAAATGTAGCTGATGTTGTGATAAACATTTTATCAGTTGACAACTTTTTGATAACTTTCACAGGAAACGAGAAATGTAAGTTATTTTACAATAAGCTGGAGAAAATTGGTTAAAGGGGTTTACTACAGTATGAAATTTTTATGTAATTTGAAATTAAATTCTTGCAGGGAGTCCGCACCACCACCACCGAATCCCGAGACAACATTGTCGCTAGTCTCAAGGAGAAATACGCTGGAGTCAGGTAAATAACTGGAGGGAATTTCAATTTTTCAATTTTTGTCTAAAGAGCTAACTTGCTTGATGATTAACCAGTTTTAAGCTATGGTTTAGAAGGTACTGAGCGCTTCTCTTTAGTTTTATCAACCTATCAGCTAAAAATCGCTCTGAAATAGCTTAAAATCGATATTTTCCAAAAATTCAAATTATCAATATGATCTCCAAAAAATTTCCTATCGGGTTGTATAATTTTCCTAAAAACTGGATTGCTAGAAGCTACGAAAATCCTCCTTGAAGATTAAAAAAAAAGATTTTTCAAGACAAACCGAAACTTTTCA</canonical>
            <polymorphic>CAGCGAGGATTCCAAGTGTACCGATCCAGAGTTGAGAAAGATCATCTTGAATGTGAGTGAGAGGTTTTTTTTAGTATAGTAGAGGTCTTTGAGCGTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAATGAGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAATCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCTAGAAGCGGTTGACTTGTAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTGGGTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGACAAGCTCAGGCTTTTTAACTTTGAATCAAATTATCTCGGTTACTGTAAGAGATATTAAAAAGTAATTAACTAGTAAAATGTAGCTGATGTTGTGATAAACATTTTATCAGTTGACAACTTTTTGATAWCTTTCACAGGAAACGAGAAATGTAAGTTATTTTACAATAAGCTGGAGAAAATTGGTTAAAGGGGTTTACTACAGTATGAAATTTTTATGTAATTTGAAATTAAATTCTTGCAGGGAGTCCGCACCACCACCACCGAATCCCGAGACAACATTGTCGCTAGTCTCAAGGAGAAATACGCTGGAGTCAGGTAAATAACTGGAGGGAATTTCAATTTTTCAATTTTTGTCTAAAGAGCTAACTTGCTTGATGATTAACCAGTTTTAAGCTATGGTTTAGAAGGTACTGAGCGCTTCTCTTTAGTTTTATCAACCTATCAGCTAAAAATCGCTCTGAAATAGCTTAAAATCGATATTTTCCAAAAATTCAAATTATCAATATGATCTCCAAAAAATTTCCTATCGGGTTGTATAATTTTCCTAAAAACTGGATTGCTAGAAGCTACGAAAATCCTCCTTGAAGATTAAAAAAAAAGATTTTTCAAGACAAACCGAAACTTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCCAACAGTGTAGCTCATC</pcr_primer_p1>
		<pcr_primer_p2>TAGTAAACCCCTTTAACCAATTT</pcr_primer_p2>
		<pcr_amplicon_size>222</pcr_amplicon_size>
		<canonical_amplicon>AGCCAACAGTGTAGCTCATCCGACAAGCTCAGGCTTTTTAACTTTGAATCAAATTATCTCGGTTACTGTAAGAGATATTAAAAAGTAATTAACTAGTAAAATGTAGCTGATGTTGTGATAAACATTTTATCAGTTGACAACTTTTTGATAACTTTCACAGGAAACGAGAAATGTAAGTTATTTTACAATAAGCTGGAGAAAATTGGTTAAAGGGGTTTACTA</canonical_amplicon>
		<polymorphic_amplicon>AGCCAACAGTGTAGCTCATCCGACAAGCTCAGGCTTTTTAACTTTGAATCAAATTATCTCGGTTACTGTAAGAGATATTAAAAAGTAATTAACTAGTAAAATGTAGCTGATGTTGTGATAAACATTTTATCAGTTGACAACTTTTTGATAWCTTTCACAGGAAACGAGAAATGTAAGTTATTTTACAATAAGCTGGAGAAAATTGGTTAAAGGGGTTTACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36403</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>85207</contig_pos>
        <strand>+</strand>
        <context>ACASTATGAA[C/G]TTTTTATGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTACAATAAGCTGGAGAAAATTGGTTAAAGGGGTTTACTACAGTATGAA</left_flank>
        <right_flank>TTTTTATGTAATTTGAAATTAAATTCTTGCAGGGAGTCCGCACCACCACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGGTCTTTGAGCGTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAATGAGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAATCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCTAGAAGCGGTTGACTTGTAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTGGGTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGACAAGCTCAGGCTTTTTAACTTTGAATCAAATTATCTCGGTTACTGTAAGAGATATTAAAAAGTAATTAACTAGTAAAATGTAGCTGATGTTGTGATAAACATTTTATCAGTTGACAACTTTTTGATAACTTTCACAGGAAACGAGAAATGTAAGTTATTTTACAATAAGCTGGAGAAAATTGGTTAAAGGGGTTTACTACAGTATGAAATTTTTATGTAATTTGAAATTAAATTCTTGCAGGGAGTCCGCACCACCACCACCGAATCCCGAGACAACATTGTCGCTAGTCTCAAGGAGAAATACGCTGGAGTCAGGTAAATAACTGGAGGGAATTTCAATTTTTCAATTTTTGTCTAAAGAGCTAACTTGCTTGATGATTAACCAGTTTTAAGCTATGGTTTAGAAGGTACTGAGCGCTTCTCTTTAGTTTTATCAACCTATCAGCTAAAAATCGCTCTGAAATAGCTTAAAATCGATATTTTCCAAAAATTCAAATTATCAATATGATCTCCAAAAAATTTCCTATCGGGTTGTATAATTTTCCTAAAAACTGGATTGCTAGAAGCTACGAAAATCCTCCTTGAAGATTAAAAAAAAAGATTTTTCAAGACAAACCGAAACTTTTCAGTCTATCTGCTGAAACTCGTTCTGAAATAGCTCAAAATCAATATTTTCGAAAAATTCAATTTTTCAAAATAATTTCCAGAA</canonical>
            <polymorphic>GAGGTCTTTGAGCGTAATCTGTAGAAAAATTGATAATAGAATCTCAAAAATGAGTGGGAAACGGATCAAAAACGGGTCGAGAGCGGCTCAAATTATCAGCAATCCCTTGTAGCTTTAACCCAAGTTATCTCAGTTTTCATAAAAGTTTTCTAGAAGCGGTTGACTTGTAAAATGTTGCTGATATTATGATAAACATTTTATCAGTTGATAACTTTTTGATATCTTTTAAAGGAACTGAGATAAATTGGGTTAAAGTTAAAGAGTCGGCAGCCAACAGTGTAGCTCATCCGACAAGCTCAGGCTTTTTAACTTTGAATCAAATTATCTCGGTTACTGTAAGAGATATTAAAAAGTAATTAACTAGTAAAATGTAGCTGATGTTGTGATAAACATTTTATCAGTTGACAACTTTTTGATAACTTTCACAGGAAACGAGAAATGTAAGTTATTTTACAATAAGCTGGAGAAAATTGGTTAAAGGGGTTTACTACAGTATGAASTTTTTATGTAATTTGAAATTAAATTCTTGCAGGGAGTCCGCACCACCACCACCGAATCCCGAGACAACATTGTCGCTAGTCTCAAGGAGAAATACGCTGGAGTCAGGTAAATAACTGGAGGGAATTTCAATTTTTCAATTTTTGTCTAAAGAGCTAACTTGCTTGATGATTAACCAGTTTTAAGCTATGGTTTAGAAGGTACTGAGCGCTTCTCTTTAGTTTTATCAACCTATCAGCTAAAAATCGCTCTGAAATAGCTTAAAATCGATATTTTCCAAAAATTCAAATTATCAATATGATCTCCAAAAAATTTCCTATCGGGTTGTATAATTTTCCTAAAAACTGGATTGCTAGAAGCTACGAAAATCCTCCTTGAAGATTAAAAAAAAAGATTTTTCAAGACAAACCGAAACTTTTCAGTCTATCTGCTGAAACTCGTTCTGAAATAGCTCAAAATCAATATTTTCGAAAAATTCAATTTTTCAAAATAATTTCCAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>498 163 157 101 29 29 23</canonical_bands>
                <polymorphic_bands>521 163 157 101 29 29</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>152 143 143 114 101 77 63 35 30 27 23 20 13 11 11 8 7 6 6 5 5</canonical_bands>
                <polymorphic_bands>152 143 143 114 101 77 63 41 35 27 23 20 13 11 8 7 6 6 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTACAATAAGCTGGAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TCTAAACCATAGCTTAAAACTGG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTTACAATAAGCTGGAGAAAATTGGTTAAAGGGGTTTACTACAGTATGAAATTTTTATGTAATTTGAAATTAAATTCTTGCAGGGAGTCCGCACCACCACCACCGAATCCCGAGACAACATTGTCGCTAGTCTCAAGGAGAAATACGCTGGAGTCAGGTAAATAACTGGAGGGAATTTCAATTTTTCAATTTTTGTCTAAAGAGCTAACTTGCTTGATGATTAACCAGTTTTAAGCTATGGTTTAGA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTACAATAAGCTGGAGAAAATTGGTTAAAGGGGTTTACTACAGTATGAASTTTTTATGTAATTTGAAATTAAATTCTTGCAGGGAGTCCGCACCACCACCACCGAATCCCGAGACAACATTGTCGCTAGTCTCAAGGAGAAATACGCTGGAGTCAGGTAAATAACTGGAGGGAATTTCAATTTTTCAATTTTTGTCTAAAGAGCTAACTTGCTTGATGATTAACCAGTTTTAAGCTATGGTTTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36404</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>95356</contig_pos>
        <strand>+</strand>
        <context>TCATGAAATA[C/T]SAATTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAGAAATCCTAACTTTCATTTTTTATTAATTAGAAAAATTCATGAAATA</left_flank>
        <right_flank>CAATTTTTTGAGGAAAAAAAAAAGCTTTTTCGGGGTCCTTTATCTCTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAAAGAGAGAGAGCCTTATTTCATTTCCGAGCGAGAGAATTTTTGAAAAAATGGAATATATAGTATACACTTTAAGCTCAATTATCTCAATTTCTGTAAGAGATATCAAAAATTAGTCAACTGATAAAATATTGACAACACTATGGTAAATATTTTATCAGTTTACCACTTTTTGATATCTCTTACAATAACCGAGATATATAGGCTCAAAGTTTGGGGAGAAGTGCCACTTTGAGCTCAACTATCTCGGTTCCTATAAGAGATATCAAAAATCTGTCAACTGATAAAATATTGATAACATCATGATAAGCAACTCATTAGTTGACAAGTTTCTGATATATGTTGTAGGAACCGAGATAGTTAAGCACAGAGTACATATAAAGGGTGGGCTTCTAGTTCACAGTCAAAACATGTGGTTGGGTGTATTTTTTTTAATTTTAAAAATTGAAGAAATCCTAACTTTCATTTTTTATTAATTAGAAAAATTCATGAAATATCAATTTTTTGAGGAAAAAAAAAAGCTTTTTCGGGGTCCTTTATCTCTTTTTTTTTTTTGCTAAATTACCAGTCGGTTTAGGCCCCTTCGGGGCTAAATCTCCTGGCCTCCGGTCGCCCTCCACCATCGCCCTTTCTGCCCACCCACTTTATGAAACCAAGGAACGTCTCCAGAAGACTTCAAAATCAAAGTTTCGAAAAACCAAAAGTTCGGGCATCAACTAAGACACAATTCTGATCTATCTGTCCAAGTTTCAGCTTGATCGGTTAACTTTGAATGGGTGATAAGGTGTGCTACATACATACGCACATATAGAATCTGGTGAATGTTATTAGTAATGATACTATAAATCTTTCTAGAAGTAACTAGAAAAAATTATTCTTCCCGGAATGACGTTTTCTGTCATAGATCCCTTTTTTTTCAAAAAGATTATGTATGTATACAGAAAAGTAGATCCTCCCCGCATAATAATTAATCCCTTATAACACTTATTTTTAACTT</canonical>
            <polymorphic>TTGAAAAGAGAGAGAGCCTTATTTCATTTCCGAGCGAGAGAATTTTTGAAAAAATGGAATATATAGTATACACTTTAAGCTCAATTATCTCAATTTCTGTAAGAGATATCAAAAATTAGTCAACTGATAAAATATTGACAACACTATGGTAAATATTTTATCAGTTTACCACTTTTTGATATCTCTTACAATAACCGAGATATATAGGCTCAAAGTTTGGGGAGAAGTGCCACTTTGAGCTCAACTATCTCGGTTCCTATAAGAGATATCAAAAATCTGTCAACTGATAAAATATTGATAACATCATGATAAGCAACTCATTAGTTGACAAGTTTCTGATATATGTTGTAGGAACCGAGATAGTTAAGCACAGAGTACATATAAAGGGTGGGCTTCTAGTTCACAGTCAAAACATGTGGTTGGGTGTATTTTTTTTAATTTTAAAAATTGAAGAAATCCTAACTTTCATTTTTTATTAATTAGAAAAATTCATGAAATAYCAATTTTTTGAGGAAAAAAAAAAGCTTTTTCGGGGTCCTTTATCTCTTTTTTTTTTTTGCTAAATTACCAGTCGGTTTAGGCCCCTTCGGGGCTAAATCTCCTGGCCTCCGGTCGCCCTCCACCATCGCCCTTTCTGCCCACCCACTTTATGAAACCAAGGAACGTCTCCAGAAGACTTCAAAATCAAAGTTTCGAAAAACCAAAAGTTCGGGCATCAACTAAGACACAATTCTGATCTATCTGTCCAAGTTTCAGCTTGATCGGTTAACTTTGAATGGGTGATAAGGTGTGCTACATACATACGCACATATAGAATCTGGTGAATGTTATTAGTAATGATACTATAAATCTTTCTAGAAGTAACTAGAAAAAATTATTCTTCCCGGAATGACGTTTTCTGTCATAGATCCCTTTTTTTTCAAAAAGATTATGTATGTATACAGAAAAGTAGATCCTCCCCGCATAATAATTAATCCCTTATAACACTTATTTTTAACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAGAGAGCCTTATTTCATTTC</pcr_primer_p1>
		<pcr_primer_p2>CATTCCGGGAAGAATAATTT</pcr_primer_p2>
		<pcr_amplicon_size>884</pcr_amplicon_size>
		<canonical_amplicon>GAGAGAGAGCCTTATTTCATTTCCGAGCGAGAGAATTTTTGAAAAAATGGAATATATAGTATACACTTTAAGCTCAATTATCTCAATTTCTGTAAGAGATATCAAAAATTAGTCAACTGATAAAATATTGACAACACTATGGTAAATATTTTATCAGTTTACCACTTTTTGATATCTCTTACAATAACCGAGATATATAGGCTCAAAGTTTGGGGAGAAGTGCCACTTTGAGCTCAACTATCTCGGTTCCTATAAGAGATATCAAAAATCTGTCAACTGATAAAATATTGATAACATCATGATAAGCAACTCATTAGTTGACAAGTTTCTGATATATGTTGTAGGAACCGAGATAGTTAAGCACAGAGTACATATAAAGGGTGGGCTTCTAGTTCACAGTCAAAACATGTGGTTGGGTGTATTTTTTTTAATTTTAAAAATTGAAGAAATCCTAACTTTCATTTTTTATTAATTAGAAAAATTCATGAAATATCAATTTTTTGAGGAAAAAAAAAAGCTTTTTCGGGGTCCTTTATCTCTTTTTTTTTTTTGCTAAATTACCAGTCGGTTTAGGCCCCTTCGGGGCTAAATCTCCTGGCCTCCGGTCGCCCTCCACCATCGCCCTTTCTGCCCACCCACTTTATGAAACCAAGGAACGTCTCCAGAAGACTTCAAAATCAAAGTTTCGAAAAACCAAAAGTTCGGGCATCAACTAAGACACAATTCTGATCTATCTGTCCAAGTTTCAGCTTGATCGGTTAACTTTGAATGGGTGATAAGGTGTGCTACATACATACGCACATATAGAATCTGGTGAATGTTATTAGTAATGATACTATAAATCTTTCTAGAAGTAACTAGAAAAAATTATTCTTCCCGGAATG</canonical_amplicon>
		<polymorphic_amplicon>GAGAGAGAGCCTTATTTCATTTCCGAGCGAGAGAATTTTTGAAAAAATGGAATATATAGTATACACTTTAAGCTCAATTATCTCAATTTCTGTAAGAGATATCAAAAATTAGTCAACTGATAAAATATTGACAACACTATGGTAAATATTTTATCAGTTTACCACTTTTTGATATCTCTTACAATAACCGAGATATATAGGCTCAAAGTTTGGGGAGAAGTGCCACTTTGAGCTCAACTATCTCGGTTCCTATAAGAGATATCAAAAATCTGTCAACTGATAAAATATTGATAACATCATGATAAGCAACTCATTAGTTGACAAGTTTCTGATATATGTTGTAGGAACCGAGATAGTTAAGCACAGAGTACATATAAAGGGTGGGCTTCTAGTTCACAGTCAAAACATGTGGTTGGGTGTATTTTTTTTAATTTTAAAAATTGAAGAAATCCTAACTTTCATTTTTTATTAATTAGAAAAATTCATGAAATAYCAATTTTTTGAGGAAAAAAAAAAGCTTTTTCGGGGTCCTTTATCTCTTTTTTTTTTTTGCTAAATTACCAGTCGGTTTAGGCCCCTTCGGGGCTAAATCTCCTGGCCTCCGGTCGCCCTCCACCATCGCCCTTTCTGCCCACCCACTTTATGAAACCAAGGAACGTCTCCAGAAGACTTCAAAATCAAAGTTTCGAAAAACCAAAAGTTCGGGCATCAACTAAGACACAATTCTGATCTATCTGTCCAAGTTTCAGCTTGATCGGTTAACTTTGAATGGGTGATAAGGTGTGCTACATACATACGCACATATAGAATCTGGTGAATGTTATTAGTAATGATACTATAAATCTTTCTAGAAGTAACTAGAAAAAATTATTCTTCCCGGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36405</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>95357</contig_pos>
        <strand>+</strand>
        <context>CATGAAATAY[C/G]AATTTTTTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAGAAATCCTAACTTTCATTTTTTATTAATTAGAAAAATTCATGAAATAT</left_flank>
        <right_flank>AATTTTTTGAGGAAAAAAAAAAGCTTTTTCGGGGTCCTTTATCTCTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAAGAGAGAGAGCCTTATTTCATTTCCGAGCGAGAGAATTTTTGAAAAAATGGAATATATAGTATACACTTTAAGCTCAATTATCTCAATTTCTGTAAGAGATATCAAAAATTAGTCAACTGATAAAATATTGACAACACTATGGTAAATATTTTATCAGTTTACCACTTTTTGATATCTCTTACAATAACCGAGATATATAGGCTCAAAGTTTGGGGAGAAGTGCCACTTTGAGCTCAACTATCTCGGTTCCTATAAGAGATATCAAAAATCTGTCAACTGATAAAATATTGATAACATCATGATAAGCAACTCATTAGTTGACAAGTTTCTGATATATGTTGTAGGAACCGAGATAGTTAAGCACAGAGTACATATAAAGGGTGGGCTTCTAGTTCACAGTCAAAACATGTGGTTGGGTGTATTTTTTTTAATTTTAAAAATTGAAGAAATCCTAACTTTCATTTTTTATTAATTAGAAAAATTCATGAAATATCAATTTTTTGAGGAAAAAAAAAAGCTTTTTCGGGGTCCTTTATCTCTTTTTTTTTTTTGCTAAATTACCAGTCGGTTTAGGCCCCTTCGGGGCTAAATCTCCTGGCCTCCGGTCGCCCTCCACCATCGCCCTTTCTGCCCACCCACTTTATGAAACCAAGGAACGTCTCCAGAAGACTTCAAAATCAAAGTTTCGAAAAACCAAAAGTTCGGGCATCAACTAAGACACAATTCTGATCTATCTGTCCAAGTTTCAGCTTGATCGGTTAACTTTGAATGGGTGATAAGGTGTGCTACATACATACGCACATATAGAATCTGGTGAATGTTATTAGTAATGATACTATAAATCTTTCTAGAAGTAACTAGAAAAAATTATTCTTCCCGGAATGACGTTTTCTGTCATAGATCCCTTTTTTTTCAAAAAGATTATGTATGTATACAGAAAAGTAGATCCTCCCCGCATAATAATTAATCCCTTATAACACTTATTTTTAACTTT</canonical>
            <polymorphic>TGAAAAGAGAGAGAGCCTTATTTCATTTCCGAGCGAGAGAATTTTTGAAAAAATGGAATATATAGTATACACTTTAAGCTCAATTATCTCAATTTCTGTAAGAGATATCAAAAATTAGTCAACTGATAAAATATTGACAACACTATGGTAAATATTTTATCAGTTTACCACTTTTTGATATCTCTTACAATAACCGAGATATATAGGCTCAAAGTTTGGGGAGAAGTGCCACTTTGAGCTCAACTATCTCGGTTCCTATAAGAGATATCAAAAATCTGTCAACTGATAAAATATTGATAACATCATGATAAGCAACTCATTAGTTGACAAGTTTCTGATATATGTTGTAGGAACCGAGATAGTTAAGCACAGAGTACATATAAAGGGTGGGCTTCTAGTTCACAGTCAAAACATGTGGTTGGGTGTATTTTTTTTAATTTTAAAAATTGAAGAAATCCTAACTTTCATTTTTTATTAATTAGAAAAATTCATGAAATATSAATTTTTTGAGGAAAAAAAAAAGCTTTTTCGGGGTCCTTTATCTCTTTTTTTTTTTTGCTAAATTACCAGTCGGTTTAGGCCCCTTCGGGGCTAAATCTCCTGGCCTCCGGTCGCCCTCCACCATCGCCCTTTCTGCCCACCCACTTTATGAAACCAAGGAACGTCTCCAGAAGACTTCAAAATCAAAGTTTCGAAAAACCAAAAGTTCGGGCATCAACTAAGACACAATTCTGATCTATCTGTCCAAGTTTCAGCTTGATCGGTTAACTTTGAATGGGTGATAAGGTGTGCTACATACATACGCACATATAGAATCTGGTGAATGTTATTAGTAATGATACTATAAATCTTTCTAGAAGTAACTAGAAAAAATTATTCTTCCCGGAATGACGTTTTCTGTCATAGATCCCTTTTTTTTCAAAAAGATTATGTATGTATACAGAAAAGTAGATCCTCCCCGCATAATAATTAATCCCTTATAACACTTATTTTTAACTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAGAGAGCCTTATTTCATTTC</pcr_primer_p1>
		<pcr_primer_p2>CATTCCGGGAAGAATAATTT</pcr_primer_p2>
		<pcr_amplicon_size>884</pcr_amplicon_size>
		<canonical_amplicon>GAGAGAGAGCCTTATTTCATTTCCGAGCGAGAGAATTTTTGAAAAAATGGAATATATAGTATACACTTTAAGCTCAATTATCTCAATTTCTGTAAGAGATATCAAAAATTAGTCAACTGATAAAATATTGACAACACTATGGTAAATATTTTATCAGTTTACCACTTTTTGATATCTCTTACAATAACCGAGATATATAGGCTCAAAGTTTGGGGAGAAGTGCCACTTTGAGCTCAACTATCTCGGTTCCTATAAGAGATATCAAAAATCTGTCAACTGATAAAATATTGATAACATCATGATAAGCAACTCATTAGTTGACAAGTTTCTGATATATGTTGTAGGAACCGAGATAGTTAAGCACAGAGTACATATAAAGGGTGGGCTTCTAGTTCACAGTCAAAACATGTGGTTGGGTGTATTTTTTTTAATTTTAAAAATTGAAGAAATCCTAACTTTCATTTTTTATTAATTAGAAAAATTCATGAAATATCAATTTTTTGAGGAAAAAAAAAAGCTTTTTCGGGGTCCTTTATCTCTTTTTTTTTTTTGCTAAATTACCAGTCGGTTTAGGCCCCTTCGGGGCTAAATCTCCTGGCCTCCGGTCGCCCTCCACCATCGCCCTTTCTGCCCACCCACTTTATGAAACCAAGGAACGTCTCCAGAAGACTTCAAAATCAAAGTTTCGAAAAACCAAAAGTTCGGGCATCAACTAAGACACAATTCTGATCTATCTGTCCAAGTTTCAGCTTGATCGGTTAACTTTGAATGGGTGATAAGGTGTGCTACATACATACGCACATATAGAATCTGGTGAATGTTATTAGTAATGATACTATAAATCTTTCTAGAAGTAACTAGAAAAAATTATTCTTCCCGGAATG</canonical_amplicon>
		<polymorphic_amplicon>GAGAGAGAGCCTTATTTCATTTCCGAGCGAGAGAATTTTTGAAAAAATGGAATATATAGTATACACTTTAAGCTCAATTATCTCAATTTCTGTAAGAGATATCAAAAATTAGTCAACTGATAAAATATTGACAACACTATGGTAAATATTTTATCAGTTTACCACTTTTTGATATCTCTTACAATAACCGAGATATATAGGCTCAAAGTTTGGGGAGAAGTGCCACTTTGAGCTCAACTATCTCGGTTCCTATAAGAGATATCAAAAATCTGTCAACTGATAAAATATTGATAACATCATGATAAGCAACTCATTAGTTGACAAGTTTCTGATATATGTTGTAGGAACCGAGATAGTTAAGCACAGAGTACATATAAAGGGTGGGCTTCTAGTTCACAGTCAAAACATGTGGTTGGGTGTATTTTTTTTAATTTTAAAAATTGAAGAAATCCTAACTTTCATTTTTTATTAATTAGAAAAATTCATGAAATATSAATTTTTTGAGGAAAAAAAAAAGCTTTTTCGGGGTCCTTTATCTCTTTTTTTTTTTTGCTAAATTACCAGTCGGTTTAGGCCCCTTCGGGGCTAAATCTCCTGGCCTCCGGTCGCCCTCCACCATCGCCCTTTCTGCCCACCCACTTTATGAAACCAAGGAACGTCTCCAGAAGACTTCAAAATCAAAGTTTCGAAAAACCAAAAGTTCGGGCATCAACTAAGACACAATTCTGATCTATCTGTCCAAGTTTCAGCTTGATCGGTTAACTTTGAATGGGTGATAAGGTGTGCTACATACATACGCACATATAGAATCTGGTGAATGTTATTAGTAATGATACTATAAATCTTTCTAGAAGTAACTAGAAAAAATTATTCTTCCCGGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36406</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>103932</contig_pos>
        <strand>+</strand>
        <context>ATTTTAGTTT[C/T]ACTGAGGCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCATATATCTAGGCTAATTTTGAAGGAAGTTATAGGCAATTTTAGTTT</left_flank>
        <right_flank>ACTGAGGCTTAGGAGATTTTCGCTATAACTTCATTCAAAATCCACCTAGA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGACTGCTCGTGGACAAGTTGTGGCGCGAAATTTGAACTTTTTGGGATTTTTAAAGCTCAGCTCTTGTTTTCTCAGTATTTTCATAATTTCATAAATTACTGGATTTTAGAAATTTCCAAAAATTCAAAAAATTGAAAATTCAGAACACAAACCAAACTGTTTTGAGCTAAACTTTAGGCTCCGCCCCTTTCCAATCTAGTCTAAAAATTTGGAAAATATTTTAAGGCTCAATAGAAAACTAAACATCGGCTCCTAGAGAGCTTTGAATTGACCCAACTCCGCGAAAATTTCAAATTACGCGCCACAACTTGTCCACGAGGAGTCCAAAACTCGTTTTCGAGAAAGTATGCCAATATTATACTCATTTTGAAGCTCTCAAATCGCTTATTCTCAATATTTGATATTTGGAAAGAATAGTTATGATTTTGCAGTCATTTCGGTGCAAAAATCATATATCTAGGCTAATTTTGAAGGAAGTTATAGGCAATTTTAGTTTCACTGAGGCTTAGGAGATTTTCGCTATAACTTCATTCAAAATCCACCTAGAACCCTAATCTTTCTACCAAAATGACCAGAAAACTCTAGAGAATCCCACAGTACCTCAACTAAATAAACCGCTTCTTCCGGAAACAGCTCATAACCATTTTTCACCGGATTCCCCATTGATTCCAAGTGTTTTCCAGTCACTTTTGTCACTTTTAATGTCGAATTCCCGGGAGAATATTGGATTTCAATCGTTTTTCGTCTGGAAAATTTGTCTTAAAATAAAATTAACTAATTAATCAATTAAATGAATTCAATTAGAAAAAAAATAAAATTCTAACTTTCTCTTCGCTCGACTCCAATCTCCATTGCTATTGGACATCTGGAAAATTGGAAATCTGGAATTTTTAGTCAAAATTTTGAGTTTTTTTCCAAAAAAAAAAAAGGTTAAAGTATTCAAAAAATCTCAATTATTTTCATTTTAGACGACCAAAAAAGCCAAAAAAAAATAATA</canonical>
            <polymorphic>TTGGACTGCTCGTGGACAAGTTGTGGCGCGAAATTTGAACTTTTTGGGATTTTTAAAGCTCAGCTCTTGTTTTCTCAGTATTTTCATAATTTCATAAATTACTGGATTTTAGAAATTTCCAAAAATTCAAAAAATTGAAAATTCAGAACACAAACCAAACTGTTTTGAGCTAAACTTTAGGCTCCGCCCCTTTCCAATCTAGTCTAAAAATTTGGAAAATATTTTAAGGCTCAATAGAAAACTAAACATCGGCTCCTAGAGAGCTTTGAATTGACCCAACTCCGCGAAAATTTCAAATTACGCGCCACAACTTGTCCACGAGGAGTCCAAAACTCGTTTTCGAGAAAGTATGCCAATATTATACTCATTTTGAAGCTCTCAAATCGCTTATTCTCAATATTTGATATTTGGAAAGAATAGTTATGATTTTGCAGTCATTTCGGTGCAAAAATCATATATCTAGGCTAATTTTGAAGGAAGTTATAGGCAATTTTAGTTTYACTGAGGCTTAGGAGATTTTCGCTATAACTTCATTCAAAATCCACCTAGAACCCTAATCTTTCTACCAAAATGACCAGAAAACTCTAGAGAATCCCACAGTACCTCAACTAAATAAACCGCTTCTTCCGGAAACAGCTCATAACCATTTTTCACCGGATTCCCCATTGATTCCAAGTGTTTTCCAGTCACTTTTGTCACTTTTAATGTCGAATTCCCGGGAGAATATTGGATTTCAATCGTTTTTCGTCTGGAAAATTTGTCTTAAAATAAAATTAACTAATTAATCAATTAAATGAATTCAATTAGAAAAAAAATAAAATTCTAACTTTCTCTTCGCTCGACTCCAATCTCCATTGCTATTGGACATCTGGAAAATTGGAAATCTGGAATTTTTAGTCAAAATTTTGAGTTTTTTTCCAAAAAAAAAAAAGGTTAAAGTATTCAAAAAATCTCAATTATTTTCATTTTAGACGACCAAAAAAGCCAAAAAAAAATAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>302 157 127 125 56 56 53 43 25 14 11 11 11 9</canonical_bands>
                <polymorphic_bands>302 157 127 125 99 56 53 25 14 11 11 11 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACTAAACATCGGCTCCTA</pcr_primer_p1>
		<pcr_primer_p2>GGTTCTAGGTGGATTTTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>316</pcr_amplicon_size>
		<canonical_amplicon>AAAACTAAACATCGGCTCCTAGAGAGCTTTGAATTGACCCAACTCCGCGAAAATTTCAAATTACGCGCCACAACTTGTCCACGAGGAGTCCAAAACTCGTTTTCGAGAAAGTATGCCAATATTATACTCATTTTGAAGCTCTCAAATCGCTTATTCTCAATATTTGATATTTGGAAAGAATAGTTATGATTTTGCAGTCATTTCGGTGCAAAAATCATATATCTAGGCTAATTTTGAAGGAAGTTATAGGCAATTTTAGTTTCACTGAGGCTTAGGAGATTTTCGCTATAACTTCATTCAAAATCCACCTAGAACC</canonical_amplicon>
		<polymorphic_amplicon>AAAACTAAACATCGGCTCCTAGAGAGCTTTGAATTGACCCAACTCCGCGAAAATTTCAAATTACGCGCCACAACTTGTCCACGAGGAGTCCAAAACTCGTTTTCGAGAAAGTATGCCAATATTATACTCATTTTGAAGCTCTCAAATCGCTTATTCTCAATATTTGATATTTGGAAAGAATAGTTATGATTTTGCAGTCATTTCGGTGCAAAAATCATATATCTAGGCTAATTTTGAAGGAAGTTATAGGCAATTTTAGTTTYACTGAGGCTTAGGAGATTTTCGCTATAACTTCATTCAAAATCCACCTAGAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36407</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>182951</contig_pos>
        <strand>-</strand>
        <context>GAAAATTTGA[A/G]TTTTTTTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAAACTGGACGGCTATGAATCTGAAAAATCGATTTTTGTGAAAATTTGA</left_flank>
        <right_flank>TTTTTTTTCGAAAATTCCAAAAAAAAATGCCTACCTTTGAACACCTAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAAAAACTTAAAAACTTAAAAAATCAAAATCAGCGCAAAATTCTACCCTAGATAGCATTTTAAAAATTCTTTAAACCCCCTCTAACAGTACAAAAAAAAAAGAAGGCGCGGTGACGCGGAGGTGATTGTCGCACCAGCGACAATTTCTGTTGTCGCGCGCGTGACAACTACCTCCGTGCCAACGCGCATTCTGAATCTTTGGGGGTTGGATCCAACTTTTTTAGATGTTTCAAAACGATTTCTAGAGTAAAATTTAGCGTTGATTTTGAATTTCTAATTTTCAAAAACATATTCCTTCAAATTCAGCTCCTTACCGTCAAACAAAAATGAAAAAGTAGTCGTATATCGTACGACGAGTGGATTGCTGTTAAGCAACAAGCCACAAAAAGGATCAATTTTGAATATCGACGGACCATTTTCGGTGTACACCATCGAAGGGATTGAATGGGAAACTGGACGGCTATGAATCTGAAAAATCGATTTTTGTGAAAATTTGATTTTTTTTTCGAAAATTCCAAAAAAAAATGCCTACCTTTGAACACCTAACAAAATTGTGAATAATGTGACAAGTGTGTTGAAAAAGAAGGGCAAAATTTCCATGCAAATCTGTAAATGTTTTGAAATTTCGGAATTTTTTGGAAAATTCAAATTTTGGCGCCAAATTTCAAACCCTCACCTTCTGTAAATAACACATAAAAAGGGTCTGATTGAAGTCTTGATGATGGCTCAGATTATAATAATATATTGTGAATGGAAGTGGAGAAATTGCCATTAGCAGGGAGGAGATGGCCATCCAGAGGAGAGGTTCAATGCTGGCGCGTTTCTGGAAAATTTTGCTTTGATCATAACTTTTTGGGTTTTCGATCAATTTTTAAAATTCAAATTGTTTTGAAATCAGTGTTTTAAGAGCATTAAAATTAGTATAAATATGACTATGTTTTAAGCCAACATAATCCTGAAAAATCCAATATTTTGATGTTGATCAGGAGGTGTAGATT</canonical>
            <polymorphic>CCAAAAAACTTAAAAACTTAAAAAATCAAAATCAGCGCAAAATTCTACCCTAGATAGCATTTTAAAAATTCTTTAAACCCCCTCTAACAGTACAAAAAAAAAAGAAGGCGCGGTGACGCGGAGGTGATTGTCGCACCAGCGACAATTTCTGTTGTCGCGCGCGTGACAACTACCTCCGTGCCAACGCGCATTCTGAATCTTTGGGGGTTGGATCCAACTTTTTTAGATGTTTCAAAACGATTTCTAGAGTAAAATTTAGCGTTGATTTTGAATTTCTAATTTTCAAAAACATATTCCTTCAAATTCAGCTCCTTACCGTCAAACAAAAATGAAAAAGTAGTCGTATATCGTACGACGAGTGGATTGCTGTTAAGCAACAAGCCACAAAAAGGATCAATTTTGAATATCGACGGACCATTTTCGGTGTACACCATCGAAGGGATTGAATGGGAAACTGGACGGCTATGAATCTGAAAAATCGATTTTTGTGAAAATTTGARTTTTTTTTCGAAAATTCCAAAAAAAAATGCCTACCTTTGAACACCTAACAAAATTGTGAATAATGTGACAAGTGTGTTGAAAAAGAAGGGCAAAATTTCCATGCAAATCTGTAAATGTTTTGAAATTTCGGAATTTTTTGGAAAATTCAAATTTTGGCGCCAAATTTCAAACCCTCACCTTCTGTAAATAACACATAAAAAGGGTCTGATTGAAGTCTTGATGATGGCTCAGATTATAATAATATATTGTGAATGGAAGTGGAGAAATTGCCATTAGCAGGGAGGAGATGGCCATCCAGAGGAGAGGTTCAATGCTGGCGCGTTTCTGGAAAATTTTGCTTTGATCATAACTTTTTGGGTTTTCGATCAATTTTTAAAATTCAAATTGTTTTGAAATCAGTGTTTTAAGAGCATTAAAATTAGTATAAATATGACTATGTTTTAAGCCAACATAATCCTGAAAAATCCAATATTTTGATGTTGATCAGGAGGTGTAGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTCAAACAAAAATGAAAAAGTA</pcr_primer_p1>
		<pcr_primer_p2>ATTCACAATTTTGTTAGGTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CGTCAAACAAAAATGAAAAAGTAGTCGTATATCGTACGACGAGTGGATTGCTGTTAAGCAACAAGCCACAAAAAGGATCAATTTTGAATATCGACGGACCATTTTCGGTGTACACCATCGAAGGGATTGAATGGGAAACTGGACGGCTATGAATCTGAAAAATCGATTTTTGTGAAAATTTGATTTTTTTTTCGAAAATTCCAAAAAAAAATGCCTACCTTTGAACACCTAACAAAATTGTGAAT</canonical_amplicon>
		<polymorphic_amplicon>CGTCAAACAAAAATGAAAAAGTAGTCGTATATCGTACGACGAGTGGATTGCTGTTAAGCAACAAGCCACAAAAAGGATCAATTTTGAATATCGACGGACCATTTTCGGTGTACACCATCGAAGGGATTGAATGGGAAACTGGACGGCTATGAATCTGAAAAATCGATTTTTGTGAAAATTTGARTTTTTTTTCGAAAATTCCAAAAAAAAATGCCTACCTTTGAACACCTAACAAAATTGTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36408</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>183326</contig_pos>
        <strand></strand>
        <context>gatcaatttt[T/A]aaaattcaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCTGGAAAATTTTGCTTTGATCATAACTTTTTGGGTTTTCGATCAATTTT</left_flank>
        <right_flank>AAAATTCAAATTGTTTTGAAATCAGTGTTTTAAGAGCATTAAAATTAGTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAAGCCACAAAAAGGATCAATTTTGAATATCGACGGACCATTTTCGGTGTACACCATCGAAGGGATTGAATGGGAAACTGGACGGCTATGAATCTGAAAAATCGATTTTTGTGAAAATTTGATTTTTTTTTCGAAAATTCCAAAAAAAAATGCCTACCTTTGAACACCTAACAAAATTGTGAATAATGTGACAAGTGTGTTGAAAAAGAAGGGCAAAATTTCCATGCAAATCTGTAAATGTTTTGAAATTTCGGAATTTTTTGGAAAATTCAAATTTTGGCGCCAAATTTCAAACCCTCACCTTCTGTAAATAACACATAAAAAGGGTCTGATTGAAGTCTTGATGATGGCTCAGATTATAATAATATATTGTGAATGGAAGTGGAGAAATTGCCATTAGCAGGGAGGAGATGGCCATCCAGAGGAGAGGTTCAATGCTGGCGCGTTTCTGGAAAATTTTGCTTTGATCATAACTTTTTGGGTTTTCGATCAATTTTTAAAATTCAAATTGTTTTGAAATCAGTGTTTTAAGAGCATTAAAATTAGTATAAATATGACTATGTTTTAAGCCAACATAATCCTGAAAAATCCAATATTTTGATGTTGATCAGGAGGTGTAGATTCTTTTACTTTTAAACAATTGTAACTTTTTCAATTTTTGCTCAATCTTAAAAATTCAAAATGTATTGGAATTAGCGTTTTAAGATCTTTATTATGTGTTTAAACATGACTAGGTTTCAAGCCAACATGCTTTTGAAAAAACCAAAATTTCGAGGTTGACCCTTTTTAGTGATCGGTAGGTGTTTAATTTTCAAACTGTTGTAACTTTATCAGTTTTTGTAGGGAACGGGAAATTTTAATATTTGAATATAAACATAATTAGGTTTTGAGCCCAAAAAAAAAATTAAAAATGGAAAAAATCGGTGCTGACCTCTTCAGTGGTTCAAGAGGTGTGGAACCTTTTAACTTTGAAACAGTCGTAACTTTTTTGATTTTTG</canonical>
            <polymorphic>AACAAGCCACAAAAAGGATCAATTTTGAATATCGACGGACCATTTTCGGTGTACACCATCGAAGGGATTGAATGGGAAACTGGACGGCTATGAATCTGAAAAATCGATTTTTGTGAAAATTTGATTTTTTTTTCGAAAATTCCAAAAAAAAATGCCTACCTTTGAACACCTAACAAAATTGTGAATAATGTGACAAGTGTGTTGAAAAAGAAGGGCAAAATTTCCATGCAAATCTGTAAATGTTTTGAAATTTCGGAATTTTTTGGAAAATTCAAATTTTGGCGCCAAATTTCAAACCCTCACCTTCTGTAAATAACACATAAAAAGGGTCTGATTGAAGTCTTGATGATGGCTCAGATTATAATAATATATTGTGAATGGAAGTGGAGAAATTGCCATTAGCAGGGAGGAGATGGCCATCCAGAGGAGAGGTTCAATGCTGGCGCGTTTCTGGAAAATTTTGCTTTGATCATAACTTTTTGGGTTTTCGATCAATTTTWAAAATTCAAATTGTTTTGAAATCAGTGTTTTAAGAGCATTAAAATTAGTATAAATATGACTATGTTTTAAGCCAACATAATCCTGAAAAATCCAATATTTTGATGTTGATCAGGAGGTGTAGATTCTTTTACTTTTAAACAATTGTAACTTTTTCAATTTTTGCTCAATCTTAAAAATTCAAAATGTATTGGAATTAGCGTTTTAAGATCTTTATTATGTGTTTAAACATGACTAGGTTTCAAGCCAACATGCTTTTGAAAAAACCAAAATTTCGAGGTTGACCCTTTTTAGTGATCGGTAGGTGTTTAATTTTCAAACTGTTGTAACTTTATCAGTTTTTGTAGGGAACGGGAAATTTTAATATTTGAATATAAACATAATTAGGTTTTGAGCCCAAAAAAAAAATTAAAAATGGAAAAAATCGGTGCTGACCTCTTCAGTGGTTCAAGAGGTGTGGAACCTTTTAACTTTGAAACAGTCGTAACTTTTTTGATTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 276 136 88</canonical_bands>
                <polymorphic_bands>636 276 88</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>499 84 68 58 52 48 36 35 32 31 28 20 9</canonical_bands>
                <polymorphic_bands>530 84 68 58 52 48 36 35 32 28 20 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCAGAGGAGAGGTTCAAT</pcr_primer_p1>
		<pcr_primer_p2>CGATCACTAAAAAGGGTCAA</pcr_primer_p2>
		<pcr_amplicon_size>380</pcr_amplicon_size>
		<canonical_amplicon>ATCCAGAGGAGAGGTTCAATGCTGGCGCGTTTCTGGAAAATTTTGCTTTGATCATAACTTTTTGGGTTTTCGATCAATTTTTAAAATTCAAATTGTTTTGAAATCAGTGTTTTAAGAGCATTAAAATTAGTATAAATATGACTATGTTTTAAGCCAACATAATCCTGAAAAATCCAATATTTTGATGTTGATCAGGAGGTGTAGATTCTTTTACTTTTAAACAATTGTAACTTTTTCAATTTTTGCTCAATCTTAAAAATTCAAAATGTATTGGAATTAGCGTTTTAAGATCTTTATTATGTGTTTAAACATGACTAGGTTTCAAGCCAACATGCTTTTGAAAAAACCAAAATTTCGAGGTTGACCCTTTTTAGTGATCG</canonical_amplicon>
		<polymorphic_amplicon>ATCCAGAGGAGAGGTTCAATGCTGGCGCGTTTCTGGAAAATTTTGCTTTGATCATAACTTTTTGGGTTTTCGATCAATTTTWAAAATTCAAATTGTTTTGAAATCAGTGTTTTAAGAGCATTAAAATTAGTATAAATATGACTATGTTTTAAGCCAACATAATCCTGAAAAATCCAATATTTTGATGTTGATCAGGAGGTGTAGATTCTTTTACTTTTAAACAATTGTAACTTTTTCAATTTTTGCTCAATCTTAAAAATTCAAAATGTATTGGAATTAGCGTTTTAAGATCTTTATTATGTGTTTAAACATGACTAGGTTTCAAGCCAACATGCTTTTGAAAAAACCAAAATTTCGAGGTTGACCCTTTTTAGTGATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36409</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>183374</contig_pos>
        <strand></strand>
        <context>attaaaatta[G/A]tataaatatg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTAAAATTCAAATTGTTTTGAAATCAGTGTTTTAAGAGCATTAAAATTA</left_flank>
        <right_flank>TATAAATATGACTATGTTTTAAGCCAACATAATCCTGAAAAATCCAATAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTACACCATCGAAGGGATTGAATGGGAAACTGGACGGCTATGAATCTGAAAAATCGATTTTTGTGAAAATTTGATTTTTTTTTCGAAAATTCCAAAAAAAAATGCCTACCTTTGAACACCTAACAAAATTGTGAATAATGTGACAAGTGTGTTGAAAAAGAAGGGCAAAATTTCCATGCAAATCTGTAAATGTTTTGAAATTTCGGAATTTTTTGGAAAATTCAAATTTTGGCGCCAAATTTCAAACCCTCACCTTCTGTAAATAACACATAAAAAGGGTCTGATTGAAGTCTTGATGATGGCTCAGATTATAATAATATATTGTGAATGGAAGTGGAGAAATTGCCATTAGCAGGGAGGAGATGGCCATCCAGAGGAGAGGTTCAATGCTGGCGCGTTTCTGGAAAATTTTGCTTTGATCATAACTTTTTGGGTTTTCGATCAATTTTTAAAATTCAAATTGTTTTGAAATCAGTGTTTTAAGAGCATTAAAATTAGTATAAATATGACTATGTTTTAAGCCAACATAATCCTGAAAAATCCAATATTTTGATGTTGATCAGGAGGTGTAGATTCTTTTACTTTTAAACAATTGTAACTTTTTCAATTTTTGCTCAATCTTAAAAATTCAAAATGTATTGGAATTAGCGTTTTAAGATCTTTATTATGTGTTTAAACATGACTAGGTTTCAAGCCAACATGCTTTTGAAAAAACCAAAATTTCGAGGTTGACCCTTTTTAGTGATCGGTAGGTGTTTAATTTTCAAACTGTTGTAACTTTATCAGTTTTTGTAGGGAACGGGAAATTTTAATATTTGAATATAAACATAATTAGGTTTTGAGCCCAAAAAAAAAATTAAAAATGGAAAAAATCGGTGCTGACCTCTTCAGTGGTTCAAGAGGTGTGGAACCTTTTAACTTTGAAACAGTCGTAACTTTTTTGATTTTTGATAAAATTTTGAAACTTAAAAAATATTGTATCAGACGTTTTAAGACCT</canonical>
            <polymorphic>GTGTACACCATCGAAGGGATTGAATGGGAAACTGGACGGCTATGAATCTGAAAAATCGATTTTTGTGAAAATTTGATTTTTTTTTCGAAAATTCCAAAAAAAAATGCCTACCTTTGAACACCTAACAAAATTGTGAATAATGTGACAAGTGTGTTGAAAAAGAAGGGCAAAATTTCCATGCAAATCTGTAAATGTTTTGAAATTTCGGAATTTTTTGGAAAATTCAAATTTTGGCGCCAAATTTCAAACCCTCACCTTCTGTAAATAACACATAAAAAGGGTCTGATTGAAGTCTTGATGATGGCTCAGATTATAATAATATATTGTGAATGGAAGTGGAGAAATTGCCATTAGCAGGGAGGAGATGGCCATCCAGAGGAGAGGTTCAATGCTGGCGCGTTTCTGGAAAATTTTGCTTTGATCATAACTTTTTGGGTTTTCGATCAATTTTTAAAATTCAAATTGTTTTGAAATCAGTGTTTTAAGAGCATTAAAATTARTATAAATATGACTATGTTTTAAGCCAACATAATCCTGAAAAATCCAATATTTTGATGTTGATCAGGAGGTGTAGATTCTTTTACTTTTAAACAATTGTAACTTTTTCAATTTTTGCTCAATCTTAAAAATTCAAAATGTATTGGAATTAGCGTTTTAAGATCTTTATTATGTGTTTAAACATGACTAGGTTTCAAGCCAACATGCTTTTGAAAAAACCAAAATTTCGAGGTTGACCCTTTTTAGTGATCGGTAGGTGTTTAATTTTCAAACTGTTGTAACTTTATCAGTTTTTGTAGGGAACGGGAAATTTTAATATTTGAATATAAACATAATTAGGTTTTGAGCCCAAAAAAAAAATTAAAAATGGAAAAAATCGGTGCTGACCTCTTCAGTGGTTCAAGAGGTGTGGAACCTTTTAACTTTGAAACAGTCGTAACTTTTTTGATTTTTGATAAAATTTTGAAACTTAAAAAATATTGTATCAGACGTTTTAAGACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCAGAGGAGAGGTTCAAT</pcr_primer_p1>
		<pcr_primer_p2>CGATCACTAAAAAGGGTCAA</pcr_primer_p2>
		<pcr_amplicon_size>380</pcr_amplicon_size>
		<canonical_amplicon>ATCCAGAGGAGAGGTTCAATGCTGGCGCGTTTCTGGAAAATTTTGCTTTGATCATAACTTTTTGGGTTTTCGATCAATTTTTAAAATTCAAATTGTTTTGAAATCAGTGTTTTAAGAGCATTAAAATTAGTATAAATATGACTATGTTTTAAGCCAACATAATCCTGAAAAATCCAATATTTTGATGTTGATCAGGAGGTGTAGATTCTTTTACTTTTAAACAATTGTAACTTTTTCAATTTTTGCTCAATCTTAAAAATTCAAAATGTATTGGAATTAGCGTTTTAAGATCTTTATTATGTGTTTAAACATGACTAGGTTTCAAGCCAACATGCTTTTGAAAAAACCAAAATTTCGAGGTTGACCCTTTTTAGTGATCG</canonical_amplicon>
		<polymorphic_amplicon>ATCCAGAGGAGAGGTTCAATGCTGGCGCGTTTCTGGAAAATTTTGCTTTGATCATAACTTTTTGGGTTTTCGATCAATTTTTAAAATTCAAATTGTTTTGAAATCAGTGTTTTAAGAGCATTAAAATTARTATAAATATGACTATGTTTTAAGCCAACATAATCCTGAAAAATCCAATATTTTGATGTTGATCAGGAGGTGTAGATTCTTTTACTTTTAAACAATTGTAACTTTTTCAATTTTTGCTCAATCTTAAAAATTCAAAATGTATTGGAATTAGCGTTTTAAGATCTTTATTATGTGTTTAAACATGACTAGGTTTCAAGCCAACATGCTTTTGAAAAAACCAAAATTTCGAGGTTGACCCTTTTTAGTGATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36410</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>183449</contig_pos>
        <strand></strand>
        <context>ggaggtgtag[A/G]ktcttttact</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAACATAATCCTGAAAAATCCAATATTTTGATGTTGATCAGGAGGTGTAG</left_flank>
        <right_flank>TTCTTTTACTTTTAAACAATTGTAACTTTTTCAATTTTTGCTCAATCTTA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTTTTTCGAAAATTCCAAAAAAAAATGCCTACCTTTGAACACCTAACAAAATTGTGAATAATGTGACAAGTGTGTTGAAAAAGAAGGGCAAAATTTCCATGCAAATCTGTAAATGTTTTGAAATTTCGGAATTTTTTGGAAAATTCAAATTTTGGCGCCAAATTTCAAACCCTCACCTTCTGTAAATAACACATAAAAAGGGTCTGATTGAAGTCTTGATGATGGCTCAGATTATAATAATATATTGTGAATGGAAGTGGAGAAATTGCCATTAGCAGGGAGGAGATGGCCATCCAGAGGAGAGGTTCAATGCTGGCGCGTTTCTGGAAAATTTTGCTTTGATCATAACTTTTTGGGTTTTCGATCAATTTTTAAAATTCAAATTGTTTTGAAATCAGTGTTTTAAGAGCATTAAAATTAGTATAAATATGACTATGTTTTAAGCCAACATAATCCTGAAAAATCCAATATTTTGATGTTGATCAGGAGGTGTAGATTCTTTTACTTTTAAACAATTGTAACTTTTTCAATTTTTGCTCAATCTTAAAAATTCAAAATGTATTGGAATTAGCGTTTTAAGATCTTTATTATGTGTTTAAACATGACTAGGTTTCAAGCCAACATGCTTTTGAAAAAACCAAAATTTCGAGGTTGACCCTTTTTAGTGATCGGTAGGTGTTTAATTTTCAAACTGTTGTAACTTTATCAGTTTTTGTAGGGAACGGGAAATTTTAATATTTGAATATAAACATAATTAGGTTTTGAGCCCAAAAAAAAAATTAAAAATGGAAAAAATCGGTGCTGACCTCTTCAGTGGTTCAAGAGGTGTGGAACCTTTTAACTTTGAAACAGTCGTAACTTTTTTGATTTTTGATAAAATTTTGAAACTTAAAAAATATTGTATCAGACGTTTTAAGACCTTCAAAATGAGTATAAGCATGACTAGGTTTTAAGCCAAAATGTATCCGAAAAATCGAAAATTTCGGGGTTGGCCCC</canonical>
            <polymorphic>ATTTTTTTTTCGAAAATTCCAAAAAAAAATGCCTACCTTTGAACACCTAACAAAATTGTGAATAATGTGACAAGTGTGTTGAAAAAGAAGGGCAAAATTTCCATGCAAATCTGTAAATGTTTTGAAATTTCGGAATTTTTTGGAAAATTCAAATTTTGGCGCCAAATTTCAAACCCTCACCTTCTGTAAATAACACATAAAAAGGGTCTGATTGAAGTCTTGATGATGGCTCAGATTATAATAATATATTGTGAATGGAAGTGGAGAAATTGCCATTAGCAGGGAGGAGATGGCCATCCAGAGGAGAGGTTCAATGCTGGCGCGTTTCTGGAAAATTTTGCTTTGATCATAACTTTTTGGGTTTTCGATCAATTTTTAAAATTCAAATTGTTTTGAAATCAGTGTTTTAAGAGCATTAAAATTAGTATAAATATGACTATGTTTTAAGCCAACATAATCCTGAAAAATCCAATATTTTGATGTTGATCAGGAGGTGTAGRTTCTTTTACTTTTAAACAATTGTAACTTTTTCAATTTTTGCTCAATCTTAAAAATTCAAAATGTATTGGAATTAGCGTTTTAAGATCTTTATTATGTGTTTAAACATGACTAGGTTTCAAGCCAACATGCTTTTGAAAAAACCAAAATTTCGAGGTTGACCCTTTTTAGTGATCGGTAGGTGTTTAATTTTCAAACTGTTGTAACTTTATCAGTTTTTGTAGGGAACGGGAAATTTTAATATTTGAATATAAACATAATTAGGTTTTGAGCCCAAAAAAAAAATTAAAAATGGAAAAAATCGGTGCTGACCTCTTCAGTGGTTCAAGAGGTGTGGAACCTTTTAACTTTGAAACAGTCGTAACTTTTTTGATTTTTGATAAAATTTTGAAACTTAAAAAATATTGTATCAGACGTTTTAAGACCTTCAAAATGAGTATAAGCATGACTAGGTTTTAAGCCAAAATGTATCCGAAAAATCGAAAATTTCGGGGTTGGCCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCAGAGGAGAGGTTCAAT</pcr_primer_p1>
		<pcr_primer_p2>CGATCACTAAAAAGGGTCAA</pcr_primer_p2>
		<pcr_amplicon_size>380</pcr_amplicon_size>
		<canonical_amplicon>ATCCAGAGGAGAGGTTCAATGCTGGCGCGTTTCTGGAAAATTTTGCTTTGATCATAACTTTTTGGGTTTTCGATCAATTTTTAAAATTCAAATTGTTTTGAAATCAGTGTTTTAAGAGCATTAAAATTAGTATAAATATGACTATGTTTTAAGCCAACATAATCCTGAAAAATCCAATATTTTGATGTTGATCAGGAGGTGTAGATTCTTTTACTTTTAAACAATTGTAACTTTTTCAATTTTTGCTCAATCTTAAAAATTCAAAATGTATTGGAATTAGCGTTTTAAGATCTTTATTATGTGTTTAAACATGACTAGGTTTCAAGCCAACATGCTTTTGAAAAAACCAAAATTTCGAGGTTGACCCTTTTTAGTGATCG</canonical_amplicon>
		<polymorphic_amplicon>ATCCAGAGGAGAGGTTCAATGCTGGCGCGTTTCTGGAAAATTTTGCTTTGATCATAACTTTTTGGGTTTTCGATCAATTTTTAAAATTCAAATTGTTTTGAAATCAGTGTTTTAAGAGCATTAAAATTAGTATAAATATGACTATGTTTTAAGCCAACATAATCCTGAAAAATCCAATATTTTGATGTTGATCAGGAGGTGTAGRTTCTTTTACTTTTAAACAATTGTAACTTTTTCAATTTTTGCTCAATCTTAAAAATTCAAAATGTATTGGAATTAGCGTTTTAAGATCTTTATTATGTGTTTAAACATGACTAGGTTTCAAGCCAACATGCTTTTGAAAAAACCAAAATTTCGAGGTTGACCCTTTTTAGTGATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36411</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>183450</contig_pos>
        <strand></strand>
        <context>gaggtgtagr[T/G]tcttttactt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AACATAATCCTGAAAAATCCAATATTTTGATGTTGATCAGGAGGTGTAGA</left_flank>
        <right_flank>TCTTTTACTTTTAAACAATTGTAACTTTTTCAATTTTTGCTCAATCTTAA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTTTTCGAAAATTCCAAAAAAAAATGCCTACCTTTGAACACCTAACAAAATTGTGAATAATGTGACAAGTGTGTTGAAAAAGAAGGGCAAAATTTCCATGCAAATCTGTAAATGTTTTGAAATTTCGGAATTTTTTGGAAAATTCAAATTTTGGCGCCAAATTTCAAACCCTCACCTTCTGTAAATAACACATAAAAAGGGTCTGATTGAAGTCTTGATGATGGCTCAGATTATAATAATATATTGTGAATGGAAGTGGAGAAATTGCCATTAGCAGGGAGGAGATGGCCATCCAGAGGAGAGGTTCAATGCTGGCGCGTTTCTGGAAAATTTTGCTTTGATCATAACTTTTTGGGTTTTCGATCAATTTTTAAAATTCAAATTGTTTTGAAATCAGTGTTTTAAGAGCATTAAAATTAGTATAAATATGACTATGTTTTAAGCCAACATAATCCTGAAAAATCCAATATTTTGATGTTGATCAGGAGGTGTAGATTCTTTTACTTTTAAACAATTGTAACTTTTTCAATTTTTGCTCAATCTTAAAAATTCAAAATGTATTGGAATTAGCGTTTTAAGATCTTTATTATGTGTTTAAACATGACTAGGTTTCAAGCCAACATGCTTTTGAAAAAACCAAAATTTCGAGGTTGACCCTTTTTAGTGATCGGTAGGTGTTTAATTTTCAAACTGTTGTAACTTTATCAGTTTTTGTAGGGAACGGGAAATTTTAATATTTGAATATAAACATAATTAGGTTTTGAGCCCAAAAAAAAAATTAAAAATGGAAAAAATCGGTGCTGACCTCTTCAGTGGTTCAAGAGGTGTGGAACCTTTTAACTTTGAAACAGTCGTAACTTTTTTGATTTTTGATAAAATTTTGAAACTTAAAAAATATTGTATCAGACGTTTTAAGACCTTCAAAATGAGTATAAGCATGACTAGGTTTTAAGCCAAAATGTATCCGAAAAATCGAAAATTTCGGGGTTGGCCCCT</canonical>
            <polymorphic>TTTTTTTTTCGAAAATTCCAAAAAAAAATGCCTACCTTTGAACACCTAACAAAATTGTGAATAATGTGACAAGTGTGTTGAAAAAGAAGGGCAAAATTTCCATGCAAATCTGTAAATGTTTTGAAATTTCGGAATTTTTTGGAAAATTCAAATTTTGGCGCCAAATTTCAAACCCTCACCTTCTGTAAATAACACATAAAAAGGGTCTGATTGAAGTCTTGATGATGGCTCAGATTATAATAATATATTGTGAATGGAAGTGGAGAAATTGCCATTAGCAGGGAGGAGATGGCCATCCAGAGGAGAGGTTCAATGCTGGCGCGTTTCTGGAAAATTTTGCTTTGATCATAACTTTTTGGGTTTTCGATCAATTTTTAAAATTCAAATTGTTTTGAAATCAGTGTTTTAAGAGCATTAAAATTAGTATAAATATGACTATGTTTTAAGCCAACATAATCCTGAAAAATCCAATATTTTGATGTTGATCAGGAGGTGTAGAKTCTTTTACTTTTAAACAATTGTAACTTTTTCAATTTTTGCTCAATCTTAAAAATTCAAAATGTATTGGAATTAGCGTTTTAAGATCTTTATTATGTGTTTAAACATGACTAGGTTTCAAGCCAACATGCTTTTGAAAAAACCAAAATTTCGAGGTTGACCCTTTTTAGTGATCGGTAGGTGTTTAATTTTCAAACTGTTGTAACTTTATCAGTTTTTGTAGGGAACGGGAAATTTTAATATTTGAATATAAACATAATTAGGTTTTGAGCCCAAAAAAAAAATTAAAAATGGAAAAAATCGGTGCTGACCTCTTCAGTGGTTCAAGAGGTGTGGAACCTTTTAACTTTGAAACAGTCGTAACTTTTTTGATTTTTGATAAAATTTTGAAACTTAAAAAATATTGTATCAGACGTTTTAAGACCTTCAAAATGAGTATAAGCATGACTAGGTTTTAAGCCAAAATGTATCCGAAAAATCGAAAATTTCGGGGTTGGCCCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCAGAGGAGAGGTTCAAT</pcr_primer_p1>
		<pcr_primer_p2>CGATCACTAAAAAGGGTCAA</pcr_primer_p2>
		<pcr_amplicon_size>380</pcr_amplicon_size>
		<canonical_amplicon>ATCCAGAGGAGAGGTTCAATGCTGGCGCGTTTCTGGAAAATTTTGCTTTGATCATAACTTTTTGGGTTTTCGATCAATTTTTAAAATTCAAATTGTTTTGAAATCAGTGTTTTAAGAGCATTAAAATTAGTATAAATATGACTATGTTTTAAGCCAACATAATCCTGAAAAATCCAATATTTTGATGTTGATCAGGAGGTGTAGATTCTTTTACTTTTAAACAATTGTAACTTTTTCAATTTTTGCTCAATCTTAAAAATTCAAAATGTATTGGAATTAGCGTTTTAAGATCTTTATTATGTGTTTAAACATGACTAGGTTTCAAGCCAACATGCTTTTGAAAAAACCAAAATTTCGAGGTTGACCCTTTTTAGTGATCG</canonical_amplicon>
		<polymorphic_amplicon>ATCCAGAGGAGAGGTTCAATGCTGGCGCGTTTCTGGAAAATTTTGCTTTGATCATAACTTTTTGGGTTTTCGATCAATTTTTAAAATTCAAATTGTTTTGAAATCAGTGTTTTAAGAGCATTAAAATTAGTATAAATATGACTATGTTTTAAGCCAACATAATCCTGAAAAATCCAATATTTTGATGTTGATCAGGAGGTGTAGAKTCTTTTACTTTTAAACAATTGTAACTTTTTCAATTTTTGCTCAATCTTAAAAATTCAAAATGTATTGGAATTAGCGTTTTAAGATCTTTATTATGTGTTTAAACATGACTAGGTTTCAAGCCAACATGCTTTTGAAAAAACCAAAATTTCGAGGTTGACCCTTTTTAGTGATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36412</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>183522</contig_pos>
        <strand></strand>
        <context>gtattggaat[T/C]agcgttttaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAACTTTTTCAATTTTTGCTCAATCTTAAAAATTCAAAATGTATTGGAAT</left_flank>
        <right_flank>AGCGTTTTAAGATCTTTATTATGTGTTTAAACATGACTAGGTTTCAAGCC</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGTGTTGAAAAAGAAGGGCAAAATTTCCATGCAAATCTGTAAATGTTTTGAAATTTCGGAATTTTTTGGAAAATTCAAATTTTGGCGCCAAATTTCAAACCCTCACCTTCTGTAAATAACACATAAAAAGGGTCTGATTGAAGTCTTGATGATGGCTCAGATTATAATAATATATTGTGAATGGAAGTGGAGAAATTGCCATTAGCAGGGAGGAGATGGCCATCCAGAGGAGAGGTTCAATGCTGGCGCGTTTCTGGAAAATTTTGCTTTGATCATAACTTTTTGGGTTTTCGATCAATTTTTAAAATTCAAATTGTTTTGAAATCAGTGTTTTAAGAGCATTAAAATTAGTATAAATATGACTATGTTTTAAGCCAACATAATCCTGAAAAATCCAATATTTTGATGTTGATCAGGAGGTGTAGATTCTTTTACTTTTAAACAATTGTAACTTTTTCAATTTTTGCTCAATCTTAAAAATTCAAAATGTATTGGAATTAGCGTTTTAAGATCTTTATTATGTGTTTAAACATGACTAGGTTTCAAGCCAACATGCTTTTGAAAAAACCAAAATTTCGAGGTTGACCCTTTTTAGTGATCGGTAGGTGTTTAATTTTCAAACTGTTGTAACTTTATCAGTTTTTGTAGGGAACGGGAAATTTTAATATTTGAATATAAACATAATTAGGTTTTGAGCCCAAAAAAAAAATTAAAAATGGAAAAAATCGGTGCTGACCTCTTCAGTGGTTCAAGAGGTGTGGAACCTTTTAACTTTGAAACAGTCGTAACTTTTTTGATTTTTGATAAAATTTTGAAACTTAAAAAATATTGTATCAGACGTTTTAAGACCTTCAAAATGAGTATAAGCATGACTAGGTTTTAAGCCAAAATGTATCCGAAAAATCGAAAATTTCGGGGTTGGCCCCTTCTAGAGGAAGTGTGGAAGCTTTCATTTTTGAAACAGTTGTAACTTCATCAGTTTTTATAGGAAACACAAAA</canonical>
            <polymorphic>GTGTGTTGAAAAAGAAGGGCAAAATTTCCATGCAAATCTGTAAATGTTTTGAAATTTCGGAATTTTTTGGAAAATTCAAATTTTGGCGCCAAATTTCAAACCCTCACCTTCTGTAAATAACACATAAAAAGGGTCTGATTGAAGTCTTGATGATGGCTCAGATTATAATAATATATTGTGAATGGAAGTGGAGAAATTGCCATTAGCAGGGAGGAGATGGCCATCCAGAGGAGAGGTTCAATGCTGGCGCGTTTCTGGAAAATTTTGCTTTGATCATAACTTTTTGGGTTTTCGATCAATTTTTAAAATTCAAATTGTTTTGAAATCAGTGTTTTAAGAGCATTAAAATTAGTATAAATATGACTATGTTTTAAGCCAACATAATCCTGAAAAATCCAATATTTTGATGTTGATCAGGAGGTGTAGATTCTTTTACTTTTAAACAATTGTAACTTTTTCAATTTTTGCTCAATCTTAAAAATTCAAAATGTATTGGAATYAGCGTTTTAAGATCTTTATTATGTGTTTAAACATGACTAGGTTTCAAGCCAACATGCTTTTGAAAAAACCAAAATTTCGAGGTTGACCCTTTTTAGTGATCGGTAGGTGTTTAATTTTCAAACTGTTGTAACTTTATCAGTTTTTGTAGGGAACGGGAAATTTTAATATTTGAATATAAACATAATTAGGTTTTGAGCCCAAAAAAAAAATTAAAAATGGAAAAAATCGGTGCTGACCTCTTCAGTGGTTCAAGAGGTGTGGAACCTTTTAACTTTGAAACAGTCGTAACTTTTTTGATTTTTGATAAAATTTTGAAACTTAAAAAATATTGTATCAGACGTTTTAAGACCTTCAAAATGAGTATAAGCATGACTAGGTTTTAAGCCAAAATGTATCCGAAAAATCGAAAATTTCGGGGTTGGCCCCTTCTAGAGGAAGTGTGGAAGCTTTCATTTTTGAAACAGTTGTAACTTCATCAGTTTTTATAGGAAACACAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>103 101 100 98 91 76 66 46 40 37 34 30 25 25 22 20 17 15 13 12 9 8 6 6</canonical_bands>
                <polymorphic_bands>103 101 100 98 93 91 66 46 40 37 34 30 25 25 22 20 15 13 12 9 8 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCAGAGGAGAGGTTCAAT</pcr_primer_p1>
		<pcr_primer_p2>CGATCACTAAAAAGGGTCAA</pcr_primer_p2>
		<pcr_amplicon_size>380</pcr_amplicon_size>
		<canonical_amplicon>ATCCAGAGGAGAGGTTCAATGCTGGCGCGTTTCTGGAAAATTTTGCTTTGATCATAACTTTTTGGGTTTTCGATCAATTTTTAAAATTCAAATTGTTTTGAAATCAGTGTTTTAAGAGCATTAAAATTAGTATAAATATGACTATGTTTTAAGCCAACATAATCCTGAAAAATCCAATATTTTGATGTTGATCAGGAGGTGTAGATTCTTTTACTTTTAAACAATTGTAACTTTTTCAATTTTTGCTCAATCTTAAAAATTCAAAATGTATTGGAATTAGCGTTTTAAGATCTTTATTATGTGTTTAAACATGACTAGGTTTCAAGCCAACATGCTTTTGAAAAAACCAAAATTTCGAGGTTGACCCTTTTTAGTGATCG</canonical_amplicon>
		<polymorphic_amplicon>ATCCAGAGGAGAGGTTCAATGCTGGCGCGTTTCTGGAAAATTTTGCTTTGATCATAACTTTTTGGGTTTTCGATCAATTTTTAAAATTCAAATTGTTTTGAAATCAGTGTTTTAAGAGCATTAAAATTAGTATAAATATGACTATGTTTTAAGCCAACATAATCCTGAAAAATCCAATATTTTGATGTTGATCAGGAGGTGTAGATTCTTTTACTTTTAAACAATTGTAACTTTTTCAATTTTTGCTCAATCTTAAAAATTCAAAATGTATTGGAATYAGCGTTTTAAGATCTTTATTATGTGTTTAAACATGACTAGGTTTCAAGCCAACATGCTTTTGAAAAAACCAAAATTTCGAGGTTGACCCTTTTTAGTGATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36413</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>183548</contig_pos>
        <strand></strand>
        <context>ttattatgtg[T/C]ttaaacatga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAAAAATTCAAAATGTATTGGAATTAGCGTTTTAAGATCTTTATTATGTG</left_flank>
        <right_flank>TTAAACATGACTAGGTTTCAAGCCAACATGCTTTTGAAAAAACCAAAATT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCATGCAAATCTGTAAATGTTTTGAAATTTCGGAATTTTTTGGAAAATTCAAATTTTGGCGCCAAATTTCAAACCCTCACCTTCTGTAAATAACACATAAAAAGGGTCTGATTGAAGTCTTGATGATGGCTCAGATTATAATAATATATTGTGAATGGAAGTGGAGAAATTGCCATTAGCAGGGAGGAGATGGCCATCCAGAGGAGAGGTTCAATGCTGGCGCGTTTCTGGAAAATTTTGCTTTGATCATAACTTTTTGGGTTTTCGATCAATTTTTAAAATTCAAATTGTTTTGAAATCAGTGTTTTAAGAGCATTAAAATTAGTATAAATATGACTATGTTTTAAGCCAACATAATCCTGAAAAATCCAATATTTTGATGTTGATCAGGAGGTGTAGATTCTTTTACTTTTAAACAATTGTAACTTTTTCAATTTTTGCTCAATCTTAAAAATTCAAAATGTATTGGAATTAGCGTTTTAAGATCTTTATTATGTGTTTAAACATGACTAGGTTTCAAGCCAACATGCTTTTGAAAAAACCAAAATTTCGAGGTTGACCCTTTTTAGTGATCGGTAGGTGTTTAATTTTCAAACTGTTGTAACTTTATCAGTTTTTGTAGGGAACGGGAAATTTTAATATTTGAATATAAACATAATTAGGTTTTGAGCCCAAAAAAAAAATTAAAAATGGAAAAAATCGGTGCTGACCTCTTCAGTGGTTCAAGAGGTGTGGAACCTTTTAACTTTGAAACAGTCGTAACTTTTTTGATTTTTGATAAAATTTTGAAACTTAAAAAATATTGTATCAGACGTTTTAAGACCTTCAAAATGAGTATAAGCATGACTAGGTTTTAAGCCAAAATGTATCCGAAAAATCGAAAATTTCGGGGTTGGCCCCTTCTAGAGGAAGTGTGGAAGCTTTCATTTTTGAAACAGTTGTAACTTCATCAGTTTTTATAGGAAACACAAAACTTTAATATTTTTAGAATAAACGTTT</canonical>
            <polymorphic>TCCATGCAAATCTGTAAATGTTTTGAAATTTCGGAATTTTTTGGAAAATTCAAATTTTGGCGCCAAATTTCAAACCCTCACCTTCTGTAAATAACACATAAAAAGGGTCTGATTGAAGTCTTGATGATGGCTCAGATTATAATAATATATTGTGAATGGAAGTGGAGAAATTGCCATTAGCAGGGAGGAGATGGCCATCCAGAGGAGAGGTTCAATGCTGGCGCGTTTCTGGAAAATTTTGCTTTGATCATAACTTTTTGGGTTTTCGATCAATTTTTAAAATTCAAATTGTTTTGAAATCAGTGTTTTAAGAGCATTAAAATTAGTATAAATATGACTATGTTTTAAGCCAACATAATCCTGAAAAATCCAATATTTTGATGTTGATCAGGAGGTGTAGATTCTTTTACTTTTAAACAATTGTAACTTTTTCAATTTTTGCTCAATCTTAAAAATTCAAAATGTATTGGAATTAGCGTTTTAAGATCTTTATTATGTGYTTAAACATGACTAGGTTTCAAGCCAACATGCTTTTGAAAAAACCAAAATTTCGAGGTTGACCCTTTTTAGTGATCGGTAGGTGTTTAATTTTCAAACTGTTGTAACTTTATCAGTTTTTGTAGGGAACGGGAAATTTTAATATTTGAATATAAACATAATTAGGTTTTGAGCCCAAAAAAAAAATTAAAAATGGAAAAAATCGGTGCTGACCTCTTCAGTGGTTCAAGAGGTGTGGAACCTTTTAACTTTGAAACAGTCGTAACTTTTTTGATTTTTGATAAAATTTTGAAACTTAAAAAATATTGTATCAGACGTTTTAAGACCTTCAAAATGAGTATAAGCATGACTAGGTTTTAAGCCAAAATGTATCCGAAAAATCGAAAATTTCGGGGTTGGCCCCTTCTAGAGGAAGTGTGGAAGCTTTCATTTTTGAAACAGTTGTAACTTCATCAGTTTTTATAGGAAACACAAAACTTTAATATTTTTAGAATAAACGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>498 278 136 88</canonical_bands>
                <polymorphic_bands>586 278 136</polymorphic_bands>
            </assay>
            <assay>
                <site>GTTTAAAC</site>
                <isoschizomers>
                    <enzyme>MssI</enzyme>
                    <enzyme>PmeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCAGAGGAGAGGTTCAAT</pcr_primer_p1>
		<pcr_primer_p2>CGATCACTAAAAAGGGTCAA</pcr_primer_p2>
		<pcr_amplicon_size>380</pcr_amplicon_size>
		<canonical_amplicon>ATCCAGAGGAGAGGTTCAATGCTGGCGCGTTTCTGGAAAATTTTGCTTTGATCATAACTTTTTGGGTTTTCGATCAATTTTTAAAATTCAAATTGTTTTGAAATCAGTGTTTTAAGAGCATTAAAATTAGTATAAATATGACTATGTTTTAAGCCAACATAATCCTGAAAAATCCAATATTTTGATGTTGATCAGGAGGTGTAGATTCTTTTACTTTTAAACAATTGTAACTTTTTCAATTTTTGCTCAATCTTAAAAATTCAAAATGTATTGGAATTAGCGTTTTAAGATCTTTATTATGTGTTTAAACATGACTAGGTTTCAAGCCAACATGCTTTTGAAAAAACCAAAATTTCGAGGTTGACCCTTTTTAGTGATCG</canonical_amplicon>
		<polymorphic_amplicon>ATCCAGAGGAGAGGTTCAATGCTGGCGCGTTTCTGGAAAATTTTGCTTTGATCATAACTTTTTGGGTTTTCGATCAATTTTTAAAATTCAAATTGTTTTGAAATCAGTGTTTTAAGAGCATTAAAATTAGTATAAATATGACTATGTTTTAAGCCAACATAATCCTGAAAAATCCAATATTTTGATGTTGATCAGGAGGTGTAGATTCTTTTACTTTTAAACAATTGTAACTTTTTCAATTTTTGCTCAATCTTAAAAATTCAAAATGTATTGGAATTAGCGTTTTAAGATCTTTATTATGTGYTTAAACATGACTAGGTTTCAAGCCAACATGCTTTTGAAAAAACCAAAATTTCGAGGTTGACCCTTTTTAGTGATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36414</snp_id>
        <super_contig>c011001927.Contig1</super_contig>
        <contig_pos>183591</contig_pos>
        <strand>-</strand>
        <context>TTTGAAAAAA[A/G]CAAAATTTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATGTGTTTAAACATGACTAGGTTTCAAGCCAACATGCTTTTGAAAAAA</left_flank>
        <right_flank>CAAAATTTCGAGGTTGACCCTTTTTAGTGATCGGTAGGTGTTTAATTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAATTCAAATTTTGGCGCCAAATTTCAAACCCTCACCTTCTGTAAATAACACATAAAAAGGGTCTGATTGAAGTCTTGATGATGGCTCAGATTATAATAATATATTGTGAATGGAAGTGGAGAAATTGCCATTAGCAGGGAGGAGATGGCCATCCAGAGGAGAGGTTCAATGCTGGCGCGTTTCTGGAAAATTTTGCTTTGATCATAACTTTTTGGGTTTTCGATCAATTTTTAAAATTCAAATTGTTTTGAAATCAGTGTTTTAAGAGCATTAAAATTAGTATAAATATGACTATGTTTTAAGCCAACATAATCCTGAAAAATCCAATATTTTGATGTTGATCAGGAGGTGTAGATTCTTTTACTTTTAAACAATTGTAACTTTTTCAATTTTTGCTCAATCTTAAAAATTCAAAATGTATTGGAATTAGCGTTTTAAGATCTTTATTATGTGTTTAAACATGACTAGGTTTCAAGCCAACATGCTTTTGAAAAAACCAAAATTTCGAGGTTGACCCTTTTTAGTGATCGGTAGGTGTTTAATTTTCAAACTGTTGTAACTTTATCAGTTTTTGTAGGGAACGGGAAATTTTAATATTTGAATATAAACATAATTAGGTTTTGAGCCCAAAAAAAAAATTAAAAATGGAAAAAATCGGTGCTGACCTCTTCAGTGGTTCAAGAGGTGTGGAACCTTTTAACTTTGAAACAGTCGTAACTTTTTTGATTTTTGATAAAATTTTGAAACTTAAAAAATATTGTATCAGACGTTTTAAGACCTTCAAAATGAGTATAAGCATGACTAGGTTTTAAGCCAAAATGTATCCGAAAAATCGAAAATTTCGGGGTTGGCCCCTTCTAGAGGAAGTGTGGAAGCTTTCATTTTTGAAACAGTTGTAACTTCATCAGTTTTTATAGGAAACACAAAACTTTAATATTTTTAGAATAAACGTTTTCAGAGCTTCAAAATGAATTTAAACACAATTAGGTTCTAATGC</canonical>
            <polymorphic>GAAAATTCAAATTTTGGCGCCAAATTTCAAACCCTCACCTTCTGTAAATAACACATAAAAAGGGTCTGATTGAAGTCTTGATGATGGCTCAGATTATAATAATATATTGTGAATGGAAGTGGAGAAATTGCCATTAGCAGGGAGGAGATGGCCATCCAGAGGAGAGGTTCAATGCTGGCGCGTTTCTGGAAAATTTTGCTTTGATCATAACTTTTTGGGTTTTCGATCAATTTTTAAAATTCAAATTGTTTTGAAATCAGTGTTTTAAGAGCATTAAAATTAGTATAAATATGACTATGTTTTAAGCCAACATAATCCTGAAAAATCCAATATTTTGATGTTGATCAGGAGGTGTAGATTCTTTTACTTTTAAACAATTGTAACTTTTTCAATTTTTGCTCAATCTTAAAAATTCAAAATGTATTGGAATTAGCGTTTTAAGATCTTTATTATGTGTTTAAACATGACTAGGTTTCAAGCCAACATGCTTTTGAAAAAARCAAAATTTCGAGGTTGACCCTTTTTAGTGATCGGTAGGTGTTTAATTTTCAAACTGTTGTAACTTTATCAGTTTTTGTAGGGAACGGGAAATTTTAATATTTGAATATAAACATAATTAGGTTTTGAGCCCAAAAAAAAAATTAAAAATGGAAAAAATCGGTGCTGACCTCTTCAGTGGTTCAAGAGGTGTGGAACCTTTTAACTTTGAAACAGTCGTAACTTTTTTGATTTTTGATAAAATTTTGAAACTTAAAAAATATTGTATCAGACGTTTTAAGACCTTCAAAATGAGTATAAGCATGACTAGGTTTTAAGCCAAAATGTATCCGAAAAATCGAAAATTTCGGGGTTGGCCCCTTCTAGAGGAAGTGTGGAAGCTTTCATTTTTGAAACAGTTGTAACTTCATCAGTTTTTATAGGAAACACAAAACTTTAATATTTTTAGAATAAACGTTTTCAGAGCTTCAAAATGAATTTAAACACAATTAGGTTCTAATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCAGAGGAGAGGTTCAAT</pcr_primer_p1>
		<pcr_primer_p2>AACTGATAAAGTTACAACAGTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>420</pcr_amplicon_size>
		<canonical_amplicon>ATCCAGAGGAGAGGTTCAATGCTGGCGCGTTTCTGGAAAATTTTGCTTTGATCATAACTTTTTGGGTTTTCGATCAATTTTTAAAATTCAAATTGTTTTGAAATCAGTGTTTTAAGAGCATTAAAATTAGTATAAATATGACTATGTTTTAAGCCAACATAATCCTGAAAAATCCAATATTTTGATGTTGATCAGGAGGTGTAGATTCTTTTACTTTTAAACAATTGTAACTTTTTCAATTTTTGCTCAATCTTAAAAATTCAAAATGTATTGGAATTAGCGTTTTAAGATCTTTATTATGTGTTTAAACATGACTAGGTTTCAAGCCAACATGCTTTTGAAAAAACCAAAATTTCGAGGTTGACCCTTTTTAGTGATCGGTAGGTGTTTAATTTTCAAACTGTTGTAACTTTATCAGTT</canonical_amplicon>
		<polymorphic_amplicon>ATCCAGAGGAGAGGTTCAATGCTGGCGCGTTTCTGGAAAATTTTGCTTTGATCATAACTTTTTGGGTTTTCGATCAATTTTTAAAATTCAAATTGTTTTGAAATCAGTGTTTTAAGAGCATTAAAATTAGTATAAATATGACTATGTTTTAAGCCAACATAATCCTGAAAAATCCAATATTTTGATGTTGATCAGGAGGTGTAGATTCTTTTACTTTTAAACAATTGTAACTTTTTCAATTTTTGCTCAATCTTAAAAATTCAAAATGTATTGGAATTAGCGTTTTAAGATCTTTATTATGTGTTTAAACATGACTAGGTTTCAAGCCAACATGCTTTTGAAAAAARCAAAATTTCGAGGTTGACCCTTTTTAGTGATCGGTAGGTGTTTAATTTTCAAACTGTTGTAACTTTATCAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36415</snp_id>
        <super_contig>c011001976.Contig1</super_contig>
        <contig_pos>5476</contig_pos>
        <strand></strand>
        <context>ATAAGGAAAT[T/A]TCTATACACA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGTTTTCGAACGCAAAATTTTATGGTTGACAAAAAAGAAAATAAGGAAAT</left_flank>
        <right_flank>TCTATACACATTTCTGAAAACTGTGATGACATTCCAGATCCAAGCTCTAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGACTATGTGTAGTTCTATGTGTATATCACAAGTTTTACAATCAATAAGCTTATTCTCTTCATCCACAAGTTTCAATGTAAGAGTGTTACAGTTATTGACAGCTTTGTGGTAGATCAAATTGATTGGTTCATACTTTATATTTTTTACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTAAAAATTTTTATTCTAAAAGAAACAACAATCCTCTTCTTCCTAGTTCAATAAGAGCTTGTATAATAGGAAAGTCTGGGTGTGGCAAAACTAATCTTTTAATGAACTTATTATTAGATGAATACTGTGGAGAAGATTATTTAGATTATGATAACTTGTACATATTCTCTACCACTCTTTTCCAGCCATGCTATCAAGCACTTATCAACGGTTTTGCGAATGGTTTGAGTAAAAAAGAAATCAGAGAATGTTTTCGAACGCAAAATTTTATGGTTGACAAAAAAGAAAATAAGGAAATTTCTATACACATTTCTGAAAACTGTGATGACATTCCAGATCCAAGCTCTATAGACCCAAATAGAAAAACGTTGATAATATTCGATGATTTAATGCTCGAAAAACAGAATAAAATAGAACAGTATTACACTCGAGGTAGACATAACAACATTGATTGCTTTTACATTCACAAAATTATATAAAACTACCGAAAAATACTATTAGGGAGAACGCCAACTTTTTCATCGTTTTTTCTCAGGATAAAATGAATTTAGAATATATCTATCGGGATCACTGTGGTGAAGTGGATAAACCCACATTTTTAGAGATGGTTACAGAAATTTGGAAAGAAAAACATAACTTTTTTACTATTGATAAGACTAGCGACTCGGACAACGGAAAGTTTAGAAAGATGTTGAAGTACTTCTTTGTCCTCTGAACACATTTTAGACATGTTTTTCCTGGCGAACATATAAAAATCCGTTTTCCGTTTTCCGTATTCCGTTTTCCGTTTTCCGTTTTC</canonical>
            <polymorphic>TAGACTATGTGTAGTTCTATGTGTATATCACAAGTTTTACAATCAATAAGCTTATTCTCTTCATCCACAAGTTTCAATGTAAGAGTGTTACAGTTATTGACAGCTTTGTGGTAGATCAAATTGATTGGTTCATACTTTATATTTTTTACGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTTAAAAATTTTTATTCTAAAAGAAACAACAATCCTCTTCTTCCTAGTTCAATAAGAGCTTGTATAATAGGAAAGTCTGGGTGTGGCAAAACTAATCTTTTAATGAACTTATTATTAGATGAATACTGTGGAGAAGATTATTTAGATTATGATAACTTGTACATATTCTCTACCACTCTTTTCCAGCCATGCTATCAAGCACTTATCAACGGTTTTGCGAATGGTTTGAGTAAAAAAGAAATCAGAGAATGTTTTCGAACGCAAAATTTTATGGTTGACAAAAAAGAAAATAAGGAAATWTCTATACACATTTCTGAAAACTGTGATGACATTCCAGATCCAAGCTCTATAGACCCAAATAGAAAAACGTTGATAATATTCGATGATTTAATGCTCGAAAAACAGAATAAAATAGAACAGTATTACACTCGAGGTAGACATAACAACATTGATTGCTTTTACATTCACAAAATTATATAAAACTACCGAAAAATACTATTAGGGAGAACGCCAACTTTTTCATCGTTTTTTCTCAGGATAAAATGAATTTAGAATATATCTATCGGGATCACTGTGGTGAAGTGGATAAACCCACATTTTTAGAGATGGTTACAGAAATTTGGAAAGAAAAACATAACTTTTTTACTATTGATAAGACTAGCGACTCGGACAACGGAAAGTTTAGAAAGATGTTGAAGTACTTCTTTGTCCTCTGAACACATTTTAGACATGTTTTTCCTGGCGAACATATAAAAATCCGTTTTCCGTTTTCCGTATTCCGTTTTCCGTTTTCCGTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>258 249 206 184 71 32</canonical_bands>
                <polymorphic_bands>281 258 206 184 71</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>258 184 174 118 88 75 71 32</canonical_bands>
                <polymorphic_bands>258 206 184 118 88 75 71</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGCTATCAAGCACTTATCAA</pcr_primer_p1>
		<pcr_primer_p2>TCTACCTCGAGTGTAATACTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CATGCTATCAAGCACTTATCAACGGTTTTGCGAATGGTTTGAGTAAAAAAGAAATCAGAGAATGTTTTCGAACGCAAAATTTTATGGTTGACAAAAAAGAAAATAAGGAAATTTCTATACACATTTCTGAAAACTGTGATGACATTCCAGATCCAAGCTCTATAGACCCAAATAGAAAAACGTTGATAATATTCGATGATTTAATGCTCGAAAAACAGAATAAAATAGAACAGTATTACACTCGAGGTAGA</canonical_amplicon>
		<polymorphic_amplicon>CATGCTATCAAGCACTTATCAACGGTTTTGCGAATGGTTTGAGTAAAAAAGAAATCAGAGAATGTTTTCGAACGCAAAATTTTATGGTTGACAAAAAAGAAAATAAGGAAATWTCTATACACATTTCTGAAAACTGTGATGACATTCCAGATCCAAGCTCTATAGACCCAAATAGAAAAACGTTGATAATATTCGATGATTTAATGCTCGAAAAACAGAATAAAATAGAACAGTATTACACTCGAGGTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36416</snp_id>
        <super_contig>c011100830.Contig3</super_contig>
        <contig_pos>7276</contig_pos>
        <strand>+</strand>
        <context>ACTGATGTAG[A/T]AGCTGKAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTTTATCTAGTTGAATTTCGTTTATAACCAATGACGAATACTGATGTAG</left_flank>
        <right_flank>AGCTGAAAAAATGTTTTTTTTGAAAAAATTCCAATTTTCTCACTTTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGAAGAATTGAGGGAAAAAGTGATGCCTAGACTCTCAAATCCATCACTATGCCGGTTCACGAGCAAACGAATTCTCTTTTGAACTTTTTGAATTTTGCTTTTTTATCGATGCACGAGAAACGCGTCAACAATCACCAGTTGTGCGCTATTCGTGAACTATTCACCGTGTGATCCTTTGAGAAAGAAAAATGAAAAAGTGAGAAGCGGAGCGACGAACAGTACAATGAATAGGTCTCATCGCGCCGAAGGCGCGGCAAATATGCTGGTGGCAATATGGGGATCAAAATCTCAGAAAATTGATGCAGACCTCAAAATCATCAGATTCCCTCATTTTGAGCTTTAACAACCGATTATGAGCAATTTTGTATTTTTCGGAATTTTGGCTCCAAATTCGGAAATCTCAGAAAAATTGAAAAAAAAAACTCAAAATTTCAGATTTATTGATTTTGGTTTATCTAGTTGAATTTCGTTTATAACCAATGACGAATACTGATGTAGTAGCTGAAAAAATGTTTTTTTTGAAAAAATTCCAATTTTCTCACTTTTTTTCAATGTGCCTCGAATTTCTCGATTCGATGCCAAGATGATCCCACTGAAAATTTTTTTATTAACAATTTGAAAAGAAAATGATTTTTTTTTGTCGTTTTGAGCTCCATATTGCCTATATTTGGTCAGTTTTGATTTTCGACCGTTTCGACCGCGGTCGAATATCAAAGTTGAAAAAATACAAGCGAGATGGGACTCAAAATAACGGGAATTCGAAAAAATCTTGGGAGATTATAATTTTCACTACTCTCCACTCGGTTTGGCCGACTTGAAATTGTGATTTTCAGATTCCTCGTGAAATTTCCGTTATTTTGAGTCCCATATTGTCTACATTTGGTCAATATTGACTTTTGACCGTTTCGACCGCGGACGGTCGAAATTTAAAATCGTCCAAATATAGGCAAAATAGGGCTTAAAATGTCAGAAATTTGATGGGAAATTCGAAAATCATAA</canonical>
            <polymorphic>GGGAAGAATTGAGGGAAAAAGTGATGCCTAGACTCTCAAATCCATCACTATGCCGGTTCACGAGCAAACGAATTCTCTTTTGAACTTTTTGAATTTTGCTTTTTTATCGATGCACGAGAAACGCGTCAACAATCACCAGTTGTGCGCTATTCGTGAACTATTCACCGTGTGATCCTTTGAGAAAGAAAAATGAAAAAGTGAGAAGCGGAGCGACGAACAGTACAATGAATAGGTCTCATCGCGCCGAAGGCGCGGCAAATATGCTGGTGGCAATATGGGGATCAAAATCTCAGAAAATTGATGCAGACCTCAAAATCATCAGATTCCCTCATTTTGAGCTTTAACAACCGATTATGAGCAATTTTGTATTTTTCGGAATTTTGGCTCCAAATTCGGAAATCTCAGAAAAATTGAAAAAAAAAACTCAAAATTTCAGATTTATTGATTTTGGTTTATCTAGTTGAATTTCGTTTATAACCAATGACGAATACTGATGTAGWAGCTGAAAAAATGTTTTTTTTGAAAAAATTCCAATTTTCTCACTTTTTTTCAATGTGCCTCGAATTTCTCGATTCGATGCCAAGATGATCCCACTGAAAATTTTTTTATTAACAATTTGAAAAGAAAATGATTTTTTTTTGTCGTTTTGAGCTCCATATTGCCTATATTTGGTCAGTTTTGATTTTCGACCGTTTCGACCGCGGTCGAATATCAAAGTTGAAAAAATACAAGCGAGATGGGACTCAAAATAACGGGAATTCGAAAAAATCTTGGGAGATTATAATTTTCACTACTCTCCACTCGGTTTGGCCGACTTGAAATTGTGATTTTCAGATTCCTCGTGAAATTTCCGTTATTTTGAGTCCCATATTGTCTACATTTGGTCAATATTGACTTTTGACCGTTTCGACCGCGGACGGTCGAAATTTAAAATCGTCCAAATATAGGCAAAATAGGGCTTAAAATGTCAGAAATTTGATGGGAAATTCGAAAATCATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATCTCAGAAAAATTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTTTCAGTGGGATCAT</pcr_primer_p2>
		<pcr_amplicon_size>210</pcr_amplicon_size>
		<canonical_amplicon>GAAATCTCAGAAAAATTGAAAAAAAAAACTCAAAATTTCAGATTTATTGATTTTGGTTTATCTAGTTGAATTTCGTTTATAACCAATGACGAATACTGATGTAGTAGCTGAAAAAATGTTTTTTTTGAAAAAATTCCAATTTTCTCACTTTTTTTCAATGTGCCTCGAATTTCTCGATTCGATGCCAAGATGATCCCACTGAAAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAAATCTCAGAAAAATTGAAAAAAAAAACTCAAAATTTCAGATTTATTGATTTTGGTTTATCTAGTTGAATTTCGTTTATAACCAATGACGAATACTGATGTAGWAGCTGAAAAAATGTTTTTTTTGAAAAAATTCCAATTTTCTCACTTTTTTTCAATGTGCCTCGAATTTCTCGATTCGATGCCAAGATGATCCCACTGAAAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36417</snp_id>
        <super_contig>c011100830.Contig3</super_contig>
        <contig_pos>7282</contig_pos>
        <strand>+</strand>
        <context>GTAGWAGCTG[G/T]AAAAAWKTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTAGTTGAATTTCGTTTATAACCAATGACGAATACTGATGTAGTAGCTG</left_flank>
        <right_flank>AAAAATGTTTTTTTTGAAAAAATTCCAATTTTCTCACTTTTTTTCAATGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGAGGGAAAAAGTGATGCCTAGACTCTCAAATCCATCACTATGCCGGTTCACGAGCAAACGAATTCTCTTTTGAACTTTTTGAATTTTGCTTTTTTATCGATGCACGAGAAACGCGTCAACAATCACCAGTTGTGCGCTATTCGTGAACTATTCACCGTGTGATCCTTTGAGAAAGAAAAATGAAAAAGTGAGAAGCGGAGCGACGAACAGTACAATGAATAGGTCTCATCGCGCCGAAGGCGCGGCAAATATGCTGGTGGCAATATGGGGATCAAAATCTCAGAAAATTGATGCAGACCTCAAAATCATCAGATTCCCTCATTTTGAGCTTTAACAACCGATTATGAGCAATTTTGTATTTTTCGGAATTTTGGCTCCAAATTCGGAAATCTCAGAAAAATTGAAAAAAAAAACTCAAAATTTCAGATTTATTGATTTTGGTTTATCTAGTTGAATTTCGTTTATAACCAATGACGAATACTGATGTAGTAGCTGAAAAAATGTTTTTTTTGAAAAAATTCCAATTTTCTCACTTTTTTTCAATGTGCCTCGAATTTCTCGATTCGATGCCAAGATGATCCCACTGAAAATTTTTTTATTAACAATTTGAAAAGAAAATGATTTTTTTTTGTCGTTTTGAGCTCCATATTGCCTATATTTGGTCAGTTTTGATTTTCGACCGTTTCGACCGCGGTCGAATATCAAAGTTGAAAAAATACAAGCGAGATGGGACTCAAAATAACGGGAATTCGAAAAAATCTTGGGAGATTATAATTTTCACTACTCTCCACTCGGTTTGGCCGACTTGAAATTGTGATTTTCAGATTCCTCGTGAAATTTCCGTTATTTTGAGTCCCATATTGTCTACATTTGGTCAATATTGACTTTTGACCGTTTCGACCGCGGACGGTCGAAATTTAAAATCGTCCAAATATAGGCAAAATAGGGCTTAAAATGTCAGAAATTTGATGGGAAATTCGAAAATCATAATTTGCA</canonical>
            <polymorphic>AATTGAGGGAAAAAGTGATGCCTAGACTCTCAAATCCATCACTATGCCGGTTCACGAGCAAACGAATTCTCTTTTGAACTTTTTGAATTTTGCTTTTTTATCGATGCACGAGAAACGCGTCAACAATCACCAGTTGTGCGCTATTCGTGAACTATTCACCGTGTGATCCTTTGAGAAAGAAAAATGAAAAAGTGAGAAGCGGAGCGACGAACAGTACAATGAATAGGTCTCATCGCGCCGAAGGCGCGGCAAATATGCTGGTGGCAATATGGGGATCAAAATCTCAGAAAATTGATGCAGACCTCAAAATCATCAGATTCCCTCATTTTGAGCTTTAACAACCGATTATGAGCAATTTTGTATTTTTCGGAATTTTGGCTCCAAATTCGGAAATCTCAGAAAAATTGAAAAAAAAAACTCAAAATTTCAGATTTATTGATTTTGGTTTATCTAGTTGAATTTCGTTTATAACCAATGACGAATACTGATGTAGTAGCTGKAAAAATGTTTTTTTTGAAAAAATTCCAATTTTCTCACTTTTTTTCAATGTGCCTCGAATTTCTCGATTCGATGCCAAGATGATCCCACTGAAAATTTTTTTATTAACAATTTGAAAAGAAAATGATTTTTTTTTGTCGTTTTGAGCTCCATATTGCCTATATTTGGTCAGTTTTGATTTTCGACCGTTTCGACCGCGGTCGAATATCAAAGTTGAAAAAATACAAGCGAGATGGGACTCAAAATAACGGGAATTCGAAAAAATCTTGGGAGATTATAATTTTCACTACTCTCCACTCGGTTTGGCCGACTTGAAATTGTGATTTTCAGATTCCTCGTGAAATTTCCGTTATTTTGAGTCCCATATTGTCTACATTTGGTCAATATTGACTTTTGACCGTTTCGACCGCGGACGGTCGAAATTTAAAATCGTCCAAATATAGGCAAAATAGGGCTTAAAATGTCAGAAATTTGATGGGAAATTCGAAAATCATAATTTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATCTCAGAAAAATTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTTTCAGTGGGATCAT</pcr_primer_p2>
		<pcr_amplicon_size>210</pcr_amplicon_size>
		<canonical_amplicon>GAAATCTCAGAAAAATTGAAAAAAAAAACTCAAAATTTCAGATTTATTGATTTTGGTTTATCTAGTTGAATTTCGTTTATAACCAATGACGAATACTGATGTAGTAGCTGAAAAAATGTTTTTTTTGAAAAAATTCCAATTTTCTCACTTTTTTTCAATGTGCCTCGAATTTCTCGATTCGATGCCAAGATGATCCCACTGAAAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAAATCTCAGAAAAATTGAAAAAAAAAACTCAAAATTTCAGATTTATTGATTTTGGTTTATCTAGTTGAATTTCGTTTATAACCAATGACGAATACTGATGTAGTAGCTGKAAAAATGTTTTTTTTGAAAAAATTCCAATTTTCTCACTTTTTTTCAATGTGCCTCGAATTTCTCGATTCGATGCCAAGATGATCCCACTGAAAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36418</snp_id>
        <super_contig>c011100830.Contig3</super_contig>
        <contig_pos>7288</contig_pos>
        <strand>+</strand>
        <context>GCTGKAAAAA[A/T]KTTTTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAATTTCGTTTATAACCAATGACGAATACTGATGTAGTAGCTGAAAAAA</left_flank>
        <right_flank>GTTTTTTTTGAAAAAATTCCAATTTTCTCACTTTTTTTCAATGTGCCTCG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGAAAAAGTGATGCCTAGACTCTCAAATCCATCACTATGCCGGTTCACGAGCAAACGAATTCTCTTTTGAACTTTTTGAATTTTGCTTTTTTATCGATGCACGAGAAACGCGTCAACAATCACCAGTTGTGCGCTATTCGTGAACTATTCACCGTGTGATCCTTTGAGAAAGAAAAATGAAAAAGTGAGAAGCGGAGCGACGAACAGTACAATGAATAGGTCTCATCGCGCCGAAGGCGCGGCAAATATGCTGGTGGCAATATGGGGATCAAAATCTCAGAAAATTGATGCAGACCTCAAAATCATCAGATTCCCTCATTTTGAGCTTTAACAACCGATTATGAGCAATTTTGTATTTTTCGGAATTTTGGCTCCAAATTCGGAAATCTCAGAAAAATTGAAAAAAAAAACTCAAAATTTCAGATTTATTGATTTTGGTTTATCTAGTTGAATTTCGTTTATAACCAATGACGAATACTGATGTAGTAGCTGAAAAAATGTTTTTTTTGAAAAAATTCCAATTTTCTCACTTTTTTTCAATGTGCCTCGAATTTCTCGATTCGATGCCAAGATGATCCCACTGAAAATTTTTTTATTAACAATTTGAAAAGAAAATGATTTTTTTTTGTCGTTTTGAGCTCCATATTGCCTATATTTGGTCAGTTTTGATTTTCGACCGTTTCGACCGCGGTCGAATATCAAAGTTGAAAAAATACAAGCGAGATGGGACTCAAAATAACGGGAATTCGAAAAAATCTTGGGAGATTATAATTTTCACTACTCTCCACTCGGTTTGGCCGACTTGAAATTGTGATTTTCAGATTCCTCGTGAAATTTCCGTTATTTTGAGTCCCATATTGTCTACATTTGGTCAATATTGACTTTTGACCGTTTCGACCGCGGACGGTCGAAATTTAAAATCGTCCAAATATAGGCAAAATAGGGCTTAAAATGTCAGAAATTTGATGGGAAATTCGAAAATCATAATTTGCACTGTTT</canonical>
            <polymorphic>GGGAAAAAGTGATGCCTAGACTCTCAAATCCATCACTATGCCGGTTCACGAGCAAACGAATTCTCTTTTGAACTTTTTGAATTTTGCTTTTTTATCGATGCACGAGAAACGCGTCAACAATCACCAGTTGTGCGCTATTCGTGAACTATTCACCGTGTGATCCTTTGAGAAAGAAAAATGAAAAAGTGAGAAGCGGAGCGACGAACAGTACAATGAATAGGTCTCATCGCGCCGAAGGCGCGGCAAATATGCTGGTGGCAATATGGGGATCAAAATCTCAGAAAATTGATGCAGACCTCAAAATCATCAGATTCCCTCATTTTGAGCTTTAACAACCGATTATGAGCAATTTTGTATTTTTCGGAATTTTGGCTCCAAATTCGGAAATCTCAGAAAAATTGAAAAAAAAAACTCAAAATTTCAGATTTATTGATTTTGGTTTATCTAGTTGAATTTCGTTTATAACCAATGACGAATACTGATGTAGTAGCTGAAAAAAWGTTTTTTTTGAAAAAATTCCAATTTTCTCACTTTTTTTCAATGTGCCTCGAATTTCTCGATTCGATGCCAAGATGATCCCACTGAAAATTTTTTTATTAACAATTTGAAAAGAAAATGATTTTTTTTTGTCGTTTTGAGCTCCATATTGCCTATATTTGGTCAGTTTTGATTTTCGACCGTTTCGACCGCGGTCGAATATCAAAGTTGAAAAAATACAAGCGAGATGGGACTCAAAATAACGGGAATTCGAAAAAATCTTGGGAGATTATAATTTTCACTACTCTCCACTCGGTTTGGCCGACTTGAAATTGTGATTTTCAGATTCCTCGTGAAATTTCCGTTATTTTGAGTCCCATATTGTCTACATTTGGTCAATATTGACTTTTGACCGTTTCGACCGCGGACGGTCGAAATTTAAAATCGTCCAAATATAGGCAAAATAGGGCTTAAAATGTCAGAAATTTGATGGGAAATTCGAAAATCATAATTTGCACTGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATCTCAGAAAAATTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTTTCAGTGGGATCAT</pcr_primer_p2>
		<pcr_amplicon_size>210</pcr_amplicon_size>
		<canonical_amplicon>GAAATCTCAGAAAAATTGAAAAAAAAAACTCAAAATTTCAGATTTATTGATTTTGGTTTATCTAGTTGAATTTCGTTTATAACCAATGACGAATACTGATGTAGTAGCTGAAAAAATGTTTTTTTTGAAAAAATTCCAATTTTCTCACTTTTTTTCAATGTGCCTCGAATTTCTCGATTCGATGCCAAGATGATCCCACTGAAAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAAATCTCAGAAAAATTGAAAAAAAAAACTCAAAATTTCAGATTTATTGATTTTGGTTTATCTAGTTGAATTTCGTTTATAACCAATGACGAATACTGATGTAGTAGCTGAAAAAAWGTTTTTTTTGAAAAAATTCCAATTTTCTCACTTTTTTTCAATGTGCCTCGAATTTCTCGATTCGATGCCAAGATGATCCCACTGAAAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36419</snp_id>
        <super_contig>c011100830.Contig3</super_contig>
        <contig_pos>7289</contig_pos>
        <strand></strand>
        <context>CTGKAAAAAW[G/T]TTTTTTTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAATTTCGTTTATAACCAATGACGAATACTGATGTAGTAGCTGAAAAAAT</left_flank>
        <right_flank>TTTTTTTTGAAAAAATTCCAATTTTCTCACTTTTTTTCAATGTGCCTCGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAAAAGTGATGCCTAGACTCTCAAATCCATCACTATGCCGGTTCACGAGCAAACGAATTCTCTTTTGAACTTTTTGAATTTTGCTTTTTTATCGATGCACGAGAAACGCGTCAACAATCACCAGTTGTGCGCTATTCGTGAACTATTCACCGTGTGATCCTTTGAGAAAGAAAAATGAAAAAGTGAGAAGCGGAGCGACGAACAGTACAATGAATAGGTCTCATCGCGCCGAAGGCGCGGCAAATATGCTGGTGGCAATATGGGGATCAAAATCTCAGAAAATTGATGCAGACCTCAAAATCATCAGATTCCCTCATTTTGAGCTTTAACAACCGATTATGAGCAATTTTGTATTTTTCGGAATTTTGGCTCCAAATTCGGAAATCTCAGAAAAATTGAAAAAAAAAACTCAAAATTTCAGATTTATTGATTTTGGTTTATCTAGTTGAATTTCGTTTATAACCAATGACGAATACTGATGTAGTAGCTGAAAAAATGTTTTTTTTGAAAAAATTCCAATTTTCTCACTTTTTTTCAATGTGCCTCGAATTTCTCGATTCGATGCCAAGATGATCCCACTGAAAATTTTTTTATTAACAATTTGAAAAGAAAATGATTTTTTTTTGTCGTTTTGAGCTCCATATTGCCTATATTTGGTCAGTTTTGATTTTCGACCGTTTCGACCGCGGTCGAATATCAAAGTTGAAAAAATACAAGCGAGATGGGACTCAAAATAACGGGAATTCGAAAAAATCTTGGGAGATTATAATTTTCACTACTCTCCACTCGGTTTGGCCGACTTGAAATTGTGATTTTCAGATTCCTCGTGAAATTTCCGTTATTTTGAGTCCCATATTGTCTACATTTGGTCAATATTGACTTTTGACCGTTTCGACCGCGGACGGTCGAAATTTAAAATCGTCCAAATATAGGCAAAATAGGGCTTAAAATGTCAGAAATTTGATGGGAAATTCGAAAATCATAATTTGCACTGTTTT</canonical>
            <polymorphic>GGAAAAAGTGATGCCTAGACTCTCAAATCCATCACTATGCCGGTTCACGAGCAAACGAATTCTCTTTTGAACTTTTTGAATTTTGCTTTTTTATCGATGCACGAGAAACGCGTCAACAATCACCAGTTGTGCGCTATTCGTGAACTATTCACCGTGTGATCCTTTGAGAAAGAAAAATGAAAAAGTGAGAAGCGGAGCGACGAACAGTACAATGAATAGGTCTCATCGCGCCGAAGGCGCGGCAAATATGCTGGTGGCAATATGGGGATCAAAATCTCAGAAAATTGATGCAGACCTCAAAATCATCAGATTCCCTCATTTTGAGCTTTAACAACCGATTATGAGCAATTTTGTATTTTTCGGAATTTTGGCTCCAAATTCGGAAATCTCAGAAAAATTGAAAAAAAAAACTCAAAATTTCAGATTTATTGATTTTGGTTTATCTAGTTGAATTTCGTTTATAACCAATGACGAATACTGATGTAGTAGCTGAAAAAATKTTTTTTTTGAAAAAATTCCAATTTTCTCACTTTTTTTCAATGTGCCTCGAATTTCTCGATTCGATGCCAAGATGATCCCACTGAAAATTTTTTTATTAACAATTTGAAAAGAAAATGATTTTTTTTTGTCGTTTTGAGCTCCATATTGCCTATATTTGGTCAGTTTTGATTTTCGACCGTTTCGACCGCGGTCGAATATCAAAGTTGAAAAAATACAAGCGAGATGGGACTCAAAATAACGGGAATTCGAAAAAATCTTGGGAGATTATAATTTTCACTACTCTCCACTCGGTTTGGCCGACTTGAAATTGTGATTTTCAGATTCCTCGTGAAATTTCCGTTATTTTGAGTCCCATATTGTCTACATTTGGTCAATATTGACTTTTGACCGTTTCGACCGCGGACGGTCGAAATTTAAAATCGTCCAAATATAGGCAAAATAGGGCTTAAAATGTCAGAAATTTGATGGGAAATTCGAAAATCATAATTTGCACTGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATCTCAGAAAAATTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTTTCAGTGGGATCAT</pcr_primer_p2>
		<pcr_amplicon_size>210</pcr_amplicon_size>
		<canonical_amplicon>GAAATCTCAGAAAAATTGAAAAAAAAAACTCAAAATTTCAGATTTATTGATTTTGGTTTATCTAGTTGAATTTCGTTTATAACCAATGACGAATACTGATGTAGTAGCTGAAAAAATGTTTTTTTTGAAAAAATTCCAATTTTCTCACTTTTTTTCAATGTGCCTCGAATTTCTCGATTCGATGCCAAGATGATCCCACTGAAAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAAATCTCAGAAAAATTGAAAAAAAAAACTCAAAATTTCAGATTTATTGATTTTGGTTTATCTAGTTGAATTTCGTTTATAACCAATGACGAATACTGATGTAGTAGCTGAAAAAATKTTTTTTTTGAAAAAATTCCAATTTTCTCACTTTTTTTCAATGTGCCTCGAATTTCTCGATTCGATGCCAAGATGATCCCACTGAAAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36420</snp_id>
        <super_contig>c011100830.Contig3</super_contig>
        <contig_pos>7325</contig_pos>
        <strand>+</strand>
        <context>CTCACTTTTT[C/T]TCAATGTGCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTAGCTGAAAAAATGTTTTTTTTGAAAAAATTCCAATTTTCTCACTTTTT</left_flank>
        <right_flank>TCAATGTGCCTCGAATTTCTCGATTCGATGCCAAGATGATCCCACTGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCCGGTTCACGAGCAAACGAATTCTCTTTTGAACTTTTTGAATTTTGCTTTTTTATCGATGCACGAGAAACGCGTCAACAATCACCAGTTGTGCGCTATTCGTGAACTATTCACCGTGTGATCCTTTGAGAAAGAAAAATGAAAAAGTGAGAAGCGGAGCGACGAACAGTACAATGAATAGGTCTCATCGCGCCGAAGGCGCGGCAAATATGCTGGTGGCAATATGGGGATCAAAATCTCAGAAAATTGATGCAGACCTCAAAATCATCAGATTCCCTCATTTTGAGCTTTAACAACCGATTATGAGCAATTTTGTATTTTTCGGAATTTTGGCTCCAAATTCGGAAATCTCAGAAAAATTGAAAAAAAAAACTCAAAATTTCAGATTTATTGATTTTGGTTTATCTAGTTGAATTTCGTTTATAACCAATGACGAATACTGATGTAGTAGCTGAAAAAATGTTTTTTTTGAAAAAATTCCAATTTTCTCACTTTTTTTCAATGTGCCTCGAATTTCTCGATTCGATGCCAAGATGATCCCACTGAAAATTTTTTTATTAACAATTTGAAAAGAAAATGATTTTTTTTTGTCGTTTTGAGCTCCATATTGCCTATATTTGGTCAGTTTTGATTTTCGACCGTTTCGACCGCGGTCGAATATCAAAGTTGAAAAAATACAAGCGAGATGGGACTCAAAATAACGGGAATTCGAAAAAATCTTGGGAGATTATAATTTTCACTACTCTCCACTCGGTTTGGCCGACTTGAAATTGTGATTTTCAGATTCCTCGTGAAATTTCCGTTATTTTGAGTCCCATATTGTCTACATTTGGTCAATATTGACTTTTGACCGTTTCGACCGCGGACGGTCGAAATTTAAAATCGTCCAAATATAGGCAAAATAGGGCTTAAAATGTCAGAAATTTGATGGGAAATTCGAAAATCATAATTTGCACTGTTTTGAACTAAAATTTAAAAATCCTCACCCTTCAAACGCC</canonical>
            <polymorphic>ATGCCGGTTCACGAGCAAACGAATTCTCTTTTGAACTTTTTGAATTTTGCTTTTTTATCGATGCACGAGAAACGCGTCAACAATCACCAGTTGTGCGCTATTCGTGAACTATTCACCGTGTGATCCTTTGAGAAAGAAAAATGAAAAAGTGAGAAGCGGAGCGACGAACAGTACAATGAATAGGTCTCATCGCGCCGAAGGCGCGGCAAATATGCTGGTGGCAATATGGGGATCAAAATCTCAGAAAATTGATGCAGACCTCAAAATCATCAGATTCCCTCATTTTGAGCTTTAACAACCGATTATGAGCAATTTTGTATTTTTCGGAATTTTGGCTCCAAATTCGGAAATCTCAGAAAAATTGAAAAAAAAAACTCAAAATTTCAGATTTATTGATTTTGGTTTATCTAGTTGAATTTCGTTTATAACCAATGACGAATACTGATGTAGTAGCTGAAAAAATGTTTTTTTTGAAAAAATTCCAATTTTCTCACTTTTTYTCAATGTGCCTCGAATTTCTCGATTCGATGCCAAGATGATCCCACTGAAAATTTTTTTATTAACAATTTGAAAAGAAAATGATTTTTTTTTGTCGTTTTGAGCTCCATATTGCCTATATTTGGTCAGTTTTGATTTTCGACCGTTTCGACCGCGGTCGAATATCAAAGTTGAAAAAATACAAGCGAGATGGGACTCAAAATAACGGGAATTCGAAAAAATCTTGGGAGATTATAATTTTCACTACTCTCCACTCGGTTTGGCCGACTTGAAATTGTGATTTTCAGATTCCTCGTGAAATTTCCGTTATTTTGAGTCCCATATTGTCTACATTTGGTCAATATTGACTTTTGACCGTTTCGACCGCGGACGGTCGAAATTTAAAATCGTCCAAATATAGGCAAAATAGGGCTTAAAATGTCAGAAATTTGATGGGAAATTCGAAAATCATAATTTGCACTGTTTTGAACTAAAATTTAAAAATCCTCACCCTTCAAACGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATCTCAGAAAAATTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTTTCAGTGGGATCAT</pcr_primer_p2>
		<pcr_amplicon_size>210</pcr_amplicon_size>
		<canonical_amplicon>GAAATCTCAGAAAAATTGAAAAAAAAAACTCAAAATTTCAGATTTATTGATTTTGGTTTATCTAGTTGAATTTCGTTTATAACCAATGACGAATACTGATGTAGTAGCTGAAAAAATGTTTTTTTTGAAAAAATTCCAATTTTCTCACTTTTTTTCAATGTGCCTCGAATTTCTCGATTCGATGCCAAGATGATCCCACTGAAAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAAATCTCAGAAAAATTGAAAAAAAAAACTCAAAATTTCAGATTTATTGATTTTGGTTTATCTAGTTGAATTTCGTTTATAACCAATGACGAATACTGATGTAGTAGCTGAAAAAATGTTTTTTTTGAAAAAATTCCAATTTTCTCACTTTTTYTCAATGTGCCTCGAATTTCTCGATTCGATGCCAAGATGATCCCACTGAAAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36421</snp_id>
        <super_contig>c011100830.Contig3</super_contig>
        <contig_pos>7553</contig_pos>
        <strand></strand>
        <context>aatcttggga[G/A]attataattt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TACAAGCGAGATGGGACTCAAAATAACGGGAATTCGAAAAAATCTTGGGA</left_flank>
        <right_flank>ATTATAATTTTCACTACTCTCCACTCGGTTTGGCCGACTTGAAATTGTGA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGATCAAAATCTCAGAAAATTGATGCAGACCTCAAAATCATCAGATTCCCTCATTTTGAGCTTTAACAACCGATTATGAGCAATTTTGTATTTTTCGGAATTTTGGCTCCAAATTCGGAAATCTCAGAAAAATTGAAAAAAAAAACTCAAAATTTCAGATTTATTGATTTTGGTTTATCTAGTTGAATTTCGTTTATAACCAATGACGAATACTGATGTAGTAGCTGAAAAAATGTTTTTTTTGAAAAAATTCCAATTTTCTCACTTTTTTTCAATGTGCCTCGAATTTCTCGATTCGATGCCAAGATGATCCCACTGAAAATTTTTTTATTAACAATTTGAAAAGAAAATGATTTTTTTTTGTCGTTTTGAGCTCCATATTGCCTATATTTGGTCAGTTTTGATTTTCGACCGTTTCGACCGCGGTCGAATATCAAAGTTGAAAAAATACAAGCGAGATGGGACTCAAAATAACGGGAATTCGAAAAAATCTTGGGAGATTATAATTTTCACTACTCTCCACTCGGTTTGGCCGACTTGAAATTGTGATTTTCAGATTCCTCGTGAAATTTCCGTTATTTTGAGTCCCATATTGTCTACATTTGGTCAATATTGACTTTTGACCGTTTCGACCGCGGACGGTCGAAATTTAAAATCGTCCAAATATAGGCAAAATAGGGCTTAAAATGTCAGAAATTTGATGGGAAATTCGAAAATCATAATTTGCACTGTTTTGAACTAAAATTTAAAAATCCTCACCCTTCAAACGCCAACATGAACGCCCACAACGTGGCAAGTACAAAAAGGAGTACTGTAGAATTTTCAGAAATCACAGGTGCCAAAAAATAGTAAGCAAATTGTCCGAAAAAACAAGAAATCCCCTGCAAACAAGTTTGTTTCACGAAATTCCATTCTCGATTTTTCTGATTTTTTGATTTTTGAATTCCCGCCAAATCTAGAAGATTCTGAGAAGCCACTCGTTCTTTATAGGCCGCCGAC</canonical>
            <polymorphic>GGGATCAAAATCTCAGAAAATTGATGCAGACCTCAAAATCATCAGATTCCCTCATTTTGAGCTTTAACAACCGATTATGAGCAATTTTGTATTTTTCGGAATTTTGGCTCCAAATTCGGAAATCTCAGAAAAATTGAAAAAAAAAACTCAAAATTTCAGATTTATTGATTTTGGTTTATCTAGTTGAATTTCGTTTATAACCAATGACGAATACTGATGTAGTAGCTGAAAAAATGTTTTTTTTGAAAAAATTCCAATTTTCTCACTTTTTTTCAATGTGCCTCGAATTTCTCGATTCGATGCCAAGATGATCCCACTGAAAATTTTTTTATTAACAATTTGAAAAGAAAATGATTTTTTTTTGTCGTTTTGAGCTCCATATTGCCTATATTTGGTCAGTTTTGATTTTCGACCGTTTCGACCGCGGTCGAATATCAAAGTTGAAAAAATACAAGCGAGATGGGACTCAAAATAACGGGAATTCGAAAAAATCTTGGGARATTATAATTTTCACTACTCTCCACTCGGTTTGGCCGACTTGAAATTGTGATTTTCAGATTCCTCGTGAAATTTCCGTTATTTTGAGTCCCATATTGTCTACATTTGGTCAATATTGACTTTTGACCGTTTCGACCGCGGACGGTCGAAATTTAAAATCGTCCAAATATAGGCAAAATAGGGCTTAAAATGTCAGAAATTTGATGGGAAATTCGAAAATCATAATTTGCACTGTTTTGAACTAAAATTTAAAAATCCTCACCCTTCAAACGCCAACATGAACGCCCACAACGTGGCAAGTACAAAAAGGAGTACTGTAGAATTTTCAGAAATCACAGGTGCCAAAAAATAGTAAGCAAATTGTCCGAAAAAACAAGAAATCCCCTGCAAACAAGTTTGTTTCACGAAATTCCATTCTCGATTTTTCTGATTTTTTGATTTTTGAATTCCCGCCAAATCTAGAAGATTCTGAGAAGCCACTCGTTCTTTATAGGCCGCCGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCCAATTTTCTCACTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGGGTGAGGATTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>519</pcr_amplicon_size>
		<canonical_amplicon>AAATTCCAATTTTCTCACTTTTTTTCAATGTGCCTCGAATTTCTCGATTCGATGCCAAGATGATCCCACTGAAAATTTTTTTATTAACAATTTGAAAAGAAAATGATTTTTTTTTGTCGTTTTGAGCTCCATATTGCCTATATTTGGTCAGTTTTGATTTTCGACCGTTTCGACCGCGGTCGAATATCAAAGTTGAAAAAATACAAGCGAGATGGGACTCAAAATAACGGGAATTCGAAAAAATCTTGGGAGATTATAATTTTCACTACTCTCCACTCGGTTTGGCCGACTTGAAATTGTGATTTTCAGATTCCTCGTGAAATTTCCGTTATTTTGAGTCCCATATTGTCTACATTTGGTCAATATTGACTTTTGACCGTTTCGACCGCGGACGGTCGAAATTTAAAATCGTCCAAATATAGGCAAAATAGGGCTTAAAATGTCAGAAATTTGATGGGAAATTCGAAAATCATAATTTGCACTGTTTTGAACTAAAATTTAAAAATCCTCACCCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>AAATTCCAATTTTCTCACTTTTTTTCAATGTGCCTCGAATTTCTCGATTCGATGCCAAGATGATCCCACTGAAAATTTTTTTATTAACAATTTGAAAAGAAAATGATTTTTTTTTGTCGTTTTGAGCTCCATATTGCCTATATTTGGTCAGTTTTGATTTTCGACCGTTTCGACCGCGGTCGAATATCAAAGTTGAAAAAATACAAGCGAGATGGGACTCAAAATAACGGGAATTCGAAAAAATCTTGGGARATTATAATTTTCACTACTCTCCACTCGGTTTGGCCGACTTGAAATTGTGATTTTCAGATTCCTCGTGAAATTTCCGTTATTTTGAGTCCCATATTGTCTACATTTGGTCAATATTGACTTTTGACCGTTTCGACCGCGGACGGTCGAAATTTAAAATCGTCCAAATATAGGCAAAATAGGGCTTAAAATGTCAGAAATTTGATGGGAAATTCGAAAATCATAATTTGCACTGTTTTGAACTAAAATTTAAAAATCCTCACCCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36422</snp_id>
        <super_contig>c011100830.Contig3</super_contig>
        <contig_pos>20430</contig_pos>
        <strand></strand>
        <context>tttgaggcca[A/G]aatttmcggt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGCGATTTTCACAAAAGTGGCCCAAATGGCTCAGTGGGTTTTGAGGCCA</left_flank>
        <right_flank>AATTTCCGGTCCACAAGGTCAAAAGTTCAATTTTTCTCAGGTTAAAAATT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAACTGACCAAATATAGGCAATATGGGGCTCAAAATGACGGACATTTCATAAGAAGTTTGGAAATGTACTTGAAAACGAGCCAAAATATGTGGTTAAAGAGATTTTTCGAGTCAAAACATTTTGCATTTTTGACACGTTTTGAATTTGAAGATTTTGGTTTCAAAAATGATAGTTTTGGGCACATTTGAGTCTGAAAAATTTCATGAAAACCATATAAAATTTATAATATTGTTTATTCAATATAAAAATAAATAAAAAATTGACTTTGAAGAATGACTAGTGAAGGTGAACTAGTTTTTAGGTCATGAAAATGTAAAAAAAATATTTTCTAGATTTTCTTTTTTTCAGCATTTTAAAGCAGTTTTCGAATTCCTAACACTCAGAATGTTTCTAAAAATCAAAATTTACATAAAAAACGGTTGAAAACCTCAGAAAACCGTCAAAAACAGCGATTTTCACAAAAGTGGCCCAAATGGCTCAGTGGGTTTTGAGGCCAAAATTTCCGGTCCACAAGGTCAAAAGTTCAATTTTTCTCAGGTTAAAAATTTTTTGATTTTTGTGTGGACCTTGGTAAACAAGTTTTTAGGTCATGAAAATGTTTAGAAAGTGGATTTTTTCCAAAAATTTTTTAAAAAATATTTTCAGATTTTCTTATTTTTTCAGCATTTTGAAGCAGTTTTCGATTTCCAAACACTCACAATGTCGCTAAAAATCTGATTTGGAAGCCAGAAAACCAGCGAAAAACGACTGGACCAGTTCAAATCCAGAACTCGAGAGATCCATGTTTGTTCATACGAACGCTTTGAAGCCACGTCTTGATATGATACGGTAGTTGAATCTTGGTGCCTGCATGTGAAAAGTTTGGACAGTTTGTGAAGATGATAAAAACACCGAAAGAACAGTCGTGCGCCCTGATCCGAGGCTTTCCGGCGTTTGCAAAGTACGTCGTCTCGACATCTCCCGAGACAGTATGAGAGCGGCTCATTTCAAAGCTCAC</canonical>
            <polymorphic>CTGAACTGACCAAATATAGGCAATATGGGGCTCAAAATGACGGACATTTCATAAGAAGTTTGGAAATGTACTTGAAAACGAGCCAAAATATGTGGTTAAAGAGATTTTTCGAGTCAAAACATTTTGCATTTTTGACACGTTTTGAATTTGAAGATTTTGGTTTCAAAAATGATAGTTTTGGGCACATTTGAGTCTGAAAAATTTCATGAAAACCATATAAAATTTATAATATTGTTTATTCAATATAAAAATAAATAAAAAATTGACTTTGAAGAATGACTAGTGAAGGTGAACTAGTTTTTAGGTCATGAAAATGTAAAAAAAATATTTTCTAGATTTTCTTTTTTTCAGCATTTTAAAGCAGTTTTCGAATTCCTAACACTCAGAATGTTTCTAAAAATCAAAATTTACATAAAAAACGGTTGAAAACCTCAGAAAACCGTCAAAAACAGCGATTTTCACAAAAGTGGCCCAAATGGCTCAGTGGGTTTTGAGGCCARAATTTCCGGTCCACAAGGTCAAAAGTTCAATTTTTCTCAGGTTAAAAATTTTTTGATTTTTGTGTGGACCTTGGTAAACAAGTTTTTAGGTCATGAAAATGTTTAGAAAGTGGATTTTTTCCAAAAATTTTTTAAAAAATATTTTCAGATTTTCTTATTTTTTCAGCATTTTGAAGCAGTTTTCGATTTCCAAACACTCACAATGTCGCTAAAAATCTGATTTGGAAGCCAGAAAACCAGCGAAAAACGACTGGACCAGTTCAAATCCAGAACTCGAGAGATCCATGTTTGTTCATACGAACGCTTTGAAGCCACGTCTTGATATGATACGGTAGTTGAATCTTGGTGCCTGCATGTGAAAAGTTTGGACAGTTTGTGAAGATGATAAAAACACCGAAAGAACAGTCGTGCGCCCTGATCCGAGGCTTTCCGGCGTTTGCAAAGTACGTCGTCTCGACATCTCCCGAGACAGTATGAGAGCGGCTCATTTCAAAGCTCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>375 150 144 96 79 55 46 34 21</canonical_bands>
                <polymorphic_bands>375 150 144 142 79 55 34 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGCATTTTAAAGCAGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTAGCGACATTGTGAGTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>364</pcr_amplicon_size>
		<canonical_amplicon>CAGCATTTTAAAGCAGTTTTCGAATTCCTAACACTCAGAATGTTTCTAAAAATCAAAATTTACATAAAAAACGGTTGAAAACCTCAGAAAACCGTCAAAAACAGCGATTTTCACAAAAGTGGCCCAAATGGCTCAGTGGGTTTTGAGGCCAAAATTTCCGGTCCACAAGGTCAAAAGTTCAATTTTTCTCAGGTTAAAAATTTTTTGATTTTTGTGTGGACCTTGGTAAACAAGTTTTTAGGTCATGAAAATGTTTAGAAAGTGGATTTTTTCCAAAAATTTTTTAAAAAATATTTTCAGATTTTCTTATTTTTTCAGCATTTTGAAGCAGTTTTCGATTTCCAAACACTCACAATGTCGCTAA</canonical_amplicon>
		<polymorphic_amplicon>CAGCATTTTAAAGCAGTTTTCGAATTCCTAACACTCAGAATGTTTCTAAAAATCAAAATTTACATAAAAAACGGTTGAAAACCTCAGAAAACCGTCAAAAACAGCGATTTTCACAAAAGTGGCCCAAATGGCTCAGTGGGTTTTGAGGCCARAATTTCCGGTCCACAAGGTCAAAAGTTCAATTTTTCTCAGGTTAAAAATTTTTTGATTTTTGTGTGGACCTTGGTAAACAAGTTTTTAGGTCATGAAAATGTTTAGAAAGTGGATTTTTTCCAAAAATTTTTTAAAAAATATTTTCAGATTTTCTTATTTTTTCAGCATTTTGAAGCAGTTTTCGATTTCCAAACACTCACAATGTCGCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36423</snp_id>
        <super_contig>c011100830.Contig3</super_contig>
        <contig_pos>20436</contig_pos>
        <strand></strand>
        <context>gccaraattt[C/A]cggtccacaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTTCACAAAAGTGGCCCAAATGGCTCAGTGGGTTTTGAGGCCAAAATTT</left_flank>
        <right_flank>CGGTCCACAAGGTCAAAAGTTCAATTTTTCTCAGGTTAAAAATTTTTTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACCAAATATAGGCAATATGGGGCTCAAAATGACGGACATTTCATAAGAAGTTTGGAAATGTACTTGAAAACGAGCCAAAATATGTGGTTAAAGAGATTTTTCGAGTCAAAACATTTTGCATTTTTGACACGTTTTGAATTTGAAGATTTTGGTTTCAAAAATGATAGTTTTGGGCACATTTGAGTCTGAAAAATTTCATGAAAACCATATAAAATTTATAATATTGTTTATTCAATATAAAAATAAATAAAAAATTGACTTTGAAGAATGACTAGTGAAGGTGAACTAGTTTTTAGGTCATGAAAATGTAAAAAAAATATTTTCTAGATTTTCTTTTTTTCAGCATTTTAAAGCAGTTTTCGAATTCCTAACACTCAGAATGTTTCTAAAAATCAAAATTTACATAAAAAACGGTTGAAAACCTCAGAAAACCGTCAAAAACAGCGATTTTCACAAAAGTGGCCCAAATGGCTCAGTGGGTTTTGAGGCCAAAATTTCCGGTCCACAAGGTCAAAAGTTCAATTTTTCTCAGGTTAAAAATTTTTTGATTTTTGTGTGGACCTTGGTAAACAAGTTTTTAGGTCATGAAAATGTTTAGAAAGTGGATTTTTTCCAAAAATTTTTTAAAAAATATTTTCAGATTTTCTTATTTTTTCAGCATTTTGAAGCAGTTTTCGATTTCCAAACACTCACAATGTCGCTAAAAATCTGATTTGGAAGCCAGAAAACCAGCGAAAAACGACTGGACCAGTTCAAATCCAGAACTCGAGAGATCCATGTTTGTTCATACGAACGCTTTGAAGCCACGTCTTGATATGATACGGTAGTTGAATCTTGGTGCCTGCATGTGAAAAGTTTGGACAGTTTGTGAAGATGATAAAAACACCGAAAGAACAGTCGTGCGCCCTGATCCGAGGCTTTCCGGCGTTTGCAAAGTACGTCGTCTCGACATCTCCCGAGACAGTATGAGAGCGGCTCATTTCAAAGCTCACACACGT</canonical>
            <polymorphic>TGACCAAATATAGGCAATATGGGGCTCAAAATGACGGACATTTCATAAGAAGTTTGGAAATGTACTTGAAAACGAGCCAAAATATGTGGTTAAAGAGATTTTTCGAGTCAAAACATTTTGCATTTTTGACACGTTTTGAATTTGAAGATTTTGGTTTCAAAAATGATAGTTTTGGGCACATTTGAGTCTGAAAAATTTCATGAAAACCATATAAAATTTATAATATTGTTTATTCAATATAAAAATAAATAAAAAATTGACTTTGAAGAATGACTAGTGAAGGTGAACTAGTTTTTAGGTCATGAAAATGTAAAAAAAATATTTTCTAGATTTTCTTTTTTTCAGCATTTTAAAGCAGTTTTCGAATTCCTAACACTCAGAATGTTTCTAAAAATCAAAATTTACATAAAAAACGGTTGAAAACCTCAGAAAACCGTCAAAAACAGCGATTTTCACAAAAGTGGCCCAAATGGCTCAGTGGGTTTTGAGGCCAAAATTTMCGGTCCACAAGGTCAAAAGTTCAATTTTTCTCAGGTTAAAAATTTTTTGATTTTTGTGTGGACCTTGGTAAACAAGTTTTTAGGTCATGAAAATGTTTAGAAAGTGGATTTTTTCCAAAAATTTTTTAAAAAATATTTTCAGATTTTCTTATTTTTTCAGCATTTTGAAGCAGTTTTCGATTTCCAAACACTCACAATGTCGCTAAAAATCTGATTTGGAAGCCAGAAAACCAGCGAAAAACGACTGGACCAGTTCAAATCCAGAACTCGAGAGATCCATGTTTGTTCATACGAACGCTTTGAAGCCACGTCTTGATATGATACGGTAGTTGAATCTTGGTGCCTGCATGTGAAAAGTTTGGACAGTTTGTGAAGATGATAAAAACACCGAAAGAACAGTCGTGCGCCCTGATCCGAGGCTTTCCGGCGTTTGCAAAGTACGTCGTCTCGACATCTCCCGAGACAGTATGAGAGCGGCTCATTTCAAAGCTCACACACGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 424 76</canonical_bands>
                <polymorphic_bands>924 76</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGCATTTTAAAGCAGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTAGCGACATTGTGAGTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>364</pcr_amplicon_size>
		<canonical_amplicon>CAGCATTTTAAAGCAGTTTTCGAATTCCTAACACTCAGAATGTTTCTAAAAATCAAAATTTACATAAAAAACGGTTGAAAACCTCAGAAAACCGTCAAAAACAGCGATTTTCACAAAAGTGGCCCAAATGGCTCAGTGGGTTTTGAGGCCAAAATTTCCGGTCCACAAGGTCAAAAGTTCAATTTTTCTCAGGTTAAAAATTTTTTGATTTTTGTGTGGACCTTGGTAAACAAGTTTTTAGGTCATGAAAATGTTTAGAAAGTGGATTTTTTCCAAAAATTTTTTAAAAAATATTTTCAGATTTTCTTATTTTTTCAGCATTTTGAAGCAGTTTTCGATTTCCAAACACTCACAATGTCGCTAA</canonical_amplicon>
		<polymorphic_amplicon>CAGCATTTTAAAGCAGTTTTCGAATTCCTAACACTCAGAATGTTTCTAAAAATCAAAATTTACATAAAAAACGGTTGAAAACCTCAGAAAACCGTCAAAAACAGCGATTTTCACAAAAGTGGCCCAAATGGCTCAGTGGGTTTTGAGGCCAAAATTTMCGGTCCACAAGGTCAAAAGTTCAATTTTTCTCAGGTTAAAAATTTTTTGATTTTTGTGTGGACCTTGGTAAACAAGTTTTTAGGTCATGAAAATGTTTAGAAAGTGGATTTTTTCCAAAAATTTTTTAAAAAATATTTTCAGATTTTCTTATTTTTTCAGCATTTTGAAGCAGTTTTCGATTTCCAAACACTCACAATGTCGCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36424</snp_id>
        <super_contig>c011100830.Contig3</super_contig>
        <contig_pos>20620</contig_pos>
        <strand>+</strand>
        <context>TTTTCGATTT[C/T]CAAACACTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTTTCAGATTTTCTTATTTTTTCAGCATTTTGAAGCAGTTTTCGATTT</left_flank>
        <right_flank>CAAACACTCACAATGTCGCTAAAAATCTGATTTGGAAGCCAGAAAACCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCTGAAAAATTTCATGAAAACCATATAAAATTTATAATATTGTTTATTCAATATAAAAATAAATAAAAAATTGACTTTGAAGAATGACTAGTGAAGGTGAACTAGTTTTTAGGTCATGAAAATGTAAAAAAAATATTTTCTAGATTTTCTTTTTTTCAGCATTTTAAAGCAGTTTTCGAATTCCTAACACTCAGAATGTTTCTAAAAATCAAAATTTACATAAAAAACGGTTGAAAACCTCAGAAAACCGTCAAAAACAGCGATTTTCACAAAAGTGGCCCAAATGGCTCAGTGGGTTTTGAGGCCAAAATTTCCGGTCCACAAGGTCAAAAGTTCAATTTTTCTCAGGTTAAAAATTTTTTGATTTTTGTGTGGACCTTGGTAAACAAGTTTTTAGGTCATGAAAATGTTTAGAAAGTGGATTTTTTCCAAAAATTTTTTAAAAAATATTTTCAGATTTTCTTATTTTTTCAGCATTTTGAAGCAGTTTTCGATTTCCAAACACTCACAATGTCGCTAAAAATCTGATTTGGAAGCCAGAAAACCAGCGAAAAACGACTGGACCAGTTCAAATCCAGAACTCGAGAGATCCATGTTTGTTCATACGAACGCTTTGAAGCCACGTCTTGATATGATACGGTAGTTGAATCTTGGTGCCTGCATGTGAAAAGTTTGGACAGTTTGTGAAGATGATAAAAACACCGAAAGAACAGTCGTGCGCCCTGATCCGAGGCTTTCCGGCGTTTGCAAAGTACGTCGTCTCGACATCTCCCGAGACAGTATGAGAGCGGCTCATTTCAAAGCTCACACACGTGTGTGCCCAAATTTGGCCCAAATCAGGTTAAAAACAGTGGTAACTGCTATTTTGAATTTTTCATGAAATTTCTGACGTTTTGAGCCTCAAATTGCCTATTTGGTCACTTTCGATTTTCGACCGCCTCGACCGCAGGCGGTCAAAAACCAAAAGCGACCAAATATAGGCAATATGGAGCTCAAAA</canonical>
            <polymorphic>AGTCTGAAAAATTTCATGAAAACCATATAAAATTTATAATATTGTTTATTCAATATAAAAATAAATAAAAAATTGACTTTGAAGAATGACTAGTGAAGGTGAACTAGTTTTTAGGTCATGAAAATGTAAAAAAAATATTTTCTAGATTTTCTTTTTTTCAGCATTTTAAAGCAGTTTTCGAATTCCTAACACTCAGAATGTTTCTAAAAATCAAAATTTACATAAAAAACGGTTGAAAACCTCAGAAAACCGTCAAAAACAGCGATTTTCACAAAAGTGGCCCAAATGGCTCAGTGGGTTTTGAGGCCAAAATTTCCGGTCCACAAGGTCAAAAGTTCAATTTTTCTCAGGTTAAAAATTTTTTGATTTTTGTGTGGACCTTGGTAAACAAGTTTTTAGGTCATGAAAATGTTTAGAAAGTGGATTTTTTCCAAAAATTTTTTAAAAAATATTTTCAGATTTTCTTATTTTTTCAGCATTTTGAAGCAGTTTTCGATTTYCAAACACTCACAATGTCGCTAAAAATCTGATTTGGAAGCCAGAAAACCAGCGAAAAACGACTGGACCAGTTCAAATCCAGAACTCGAGAGATCCATGTTTGTTCATACGAACGCTTTGAAGCCACGTCTTGATATGATACGGTAGTTGAATCTTGGTGCCTGCATGTGAAAAGTTTGGACAGTTTGTGAAGATGATAAAAACACCGAAAGAACAGTCGTGCGCCCTGATCCGAGGCTTTCCGGCGTTTGCAAAGTACGTCGTCTCGACATCTCCCGAGACAGTATGAGAGCGGCTCATTTCAAAGCTCACACACGTGTGTGCCCAAATTTGGCCCAAATCAGGTTAAAAACAGTGGTAACTGCTATTTTGAATTTTTCATGAAATTTCTGACGTTTTGAGCCTCAAATTGCCTATTTGGTCACTTTCGATTTTCGACCGCCTCGACCGCAGGCGGTCAAAAACCAAAAGCGACCAAATATAGGCAATATGGAGCTCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCATTTTAAAGCAGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>ACGTGTGTGAGCTTTGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>658</pcr_amplicon_size>
		<canonical_amplicon>CAGCATTTTAAAGCAGTTTTCGAATTCCTAACACTCAGAATGTTTCTAAAAATCAAAATTTACATAAAAAACGGTTGAAAACCTCAGAAAACCGTCAAAAACAGCGATTTTCACAAAAGTGGCCCAAATGGCTCAGTGGGTTTTGAGGCCAAAATTTCCGGTCCACAAGGTCAAAAGTTCAATTTTTCTCAGGTTAAAAATTTTTTGATTTTTGTGTGGACCTTGGTAAACAAGTTTTTAGGTCATGAAAATGTTTAGAAAGTGGATTTTTTCCAAAAATTTTTTAAAAAATATTTTCAGATTTTCTTATTTTTTCAGCATTTTGAAGCAGTTTTCGATTTCCAAACACTCACAATGTCGCTAAAAATCTGATTTGGAAGCCAGAAAACCAGCGAAAAACGACTGGACCAGTTCAAATCCAGAACTCGAGAGATCCATGTTTGTTCATACGAACGCTTTGAAGCCACGTCTTGATATGATACGGTAGTTGAATCTTGGTGCCTGCATGTGAAAAGTTTGGACAGTTTGTGAAGATGATAAAAACACCGAAAGAACAGTCGTGCGCCCTGATCCGAGGCTTTCCGGCGTTTGCAAAGTACGTCGTCTCGACATCTCCCGAGACAGTATGAGAGCGGCTCATTTCAAAGCTCACACACGT</canonical_amplicon>
		<polymorphic_amplicon>CAGCATTTTAAAGCAGTTTTCGAATTCCTAACACTCAGAATGTTTCTAAAAATCAAAATTTACATAAAAAACGGTTGAAAACCTCAGAAAACCGTCAAAAACAGCGATTTTCACAAAAGTGGCCCAAATGGCTCAGTGGGTTTTGAGGCCAAAATTTCCGGTCCACAAGGTCAAAAGTTCAATTTTTCTCAGGTTAAAAATTTTTTGATTTTTGTGTGGACCTTGGTAAACAAGTTTTTAGGTCATGAAAATGTTTAGAAAGTGGATTTTTTCCAAAAATTTTTTAAAAAATATTTTCAGATTTTCTTATTTTTTCAGCATTTTGAAGCAGTTTTCGATTTYCAAACACTCACAATGTCGCTAAAAATCTGATTTGGAAGCCAGAAAACCAGCGAAAAACGACTGGACCAGTTCAAATCCAGAACTCGAGAGATCCATGTTTGTTCATACGAACGCTTTGAAGCCACGTCTTGATATGATACGGTAGTTGAATCTTGGTGCCTGCATGTGAAAAGTTTGGACAGTTTGTGAAGATGATAAAAACACCGAAAGAACAGTCGTGCGCCCTGATCCGAGGCTTTCCGGCGTTTGCAAAGTACGTCGTCTCGACATCTCCCGAGACAGTATGAGAGCGGCTCATTTCAAAGCTCACACACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36425</snp_id>
        <super_contig>c011100830.Contig3</super_contig>
        <contig_pos>42962</contig_pos>
        <strand>+</strand>
        <context>TCCTGATTAG[A/C]ATTTCTTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGAATGGTGTTCTTCCTCATTCGCTTTTTGGTTTCCTTGTCCTGATTAG</left_flank>
        <right_flank>ATTTCTTTTCTGAAATAATTTTTGTTTTGGTAGACTGTGATAACTAGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGTCCTAATTCATGGGAAACCCCTCCCTGGTTCTCCAAAATTAAAAACACTGATTGCTTAAAGTCCTGATACAGGATGGTTCATAAAAAGTTCAAACAGAAAATCTATTAAAATTTCTATTTAGTTGACGGTATTGTTGAAGCTGAAATCGTCCCTCGGCGTAGATTTTTTGGTCCAGCAATGACGGGAATGGTTGAAGAGTTTTGGATTGTCTTCTTGATGAAGGATAGCCTTTCGTTGAACATTACCATTACAAACCTTGAAAAAAAAGTTTTTTTAGAAGCCAGCAGAAATGTTCATTACTCACCCATCAGTAGAATGCAAGAGCTCCCAAATAAAAGTTCCACTGACATATCTCCATACACGATGATCACTCCAAGAACTCAATCTGAATGTGAAAGTAAGATCGATAAGATAAAGGGAGTCTTGGAGCATCGTTTGTAAGAAATGAATGGTGTTCTTCCTCATTCGCTTTTTGGTTTCCTTGTCCTGATTAGCATTTCTTTTCTGAAATAATTTTTGTTTTGGTAGACTGTGATAACTAGAAAATACCCTATAAAAATGGAGAATTTTGACAAAAGTGATTGTATTGAGAATTGACATGGCTATGAAAGTATAGAAAATAATGTCGAGAGCATCATCCACAAAATCGCACTGTTCAGAATCATCATAAGACCAAGCGAGGTTTTTTATAGAATAGAGAGCATGACACCCTTTATCTGAAAATATGAATTATTTTTTCGTTACTTGGATGTTTCCAATCTACTAGATTGAGGTATCCATTCTATAATTTTCTTGCCGATCCGATAGACATAAATAGCAATTAATACGATAGTTGTATGTAGGATAGAGAATATTTTGGAGTATTTCATAGGAAAAAATAAAGCACAGCATCTGTTAAGAGCAACTAACACAATTTGATACTCATTTCCAAGATACAAGGTGTTGGCGATATTGATGATCCAGGATTCGACAACTGGTGGGTATGGAGAATGTCC</canonical>
            <polymorphic>CTTGTCCTAATTCATGGGAAACCCCTCCCTGGTTCTCCAAAATTAAAAACACTGATTGCTTAAAGTCCTGATACAGGATGGTTCATAAAAAGTTCAAACAGAAAATCTATTAAAATTTCTATTTAGTTGACGGTATTGTTGAAGCTGAAATCGTCCCTCGGCGTAGATTTTTTGGTCCAGCAATGACGGGAATGGTTGAAGAGTTTTGGATTGTCTTCTTGATGAAGGATAGCCTTTCGTTGAACATTACCATTACAAACCTTGAAAAAAAAGTTTTTTTAGAAGCCAGCAGAAATGTTCATTACTCACCCATCAGTAGAATGCAAGAGCTCCCAAATAAAAGTTCCACTGACATATCTCCATACACGATGATCACTCCAAGAACTCAATCTGAATGTGAAAGTAAGATCGATAAGATAAAGGGAGTCTTGGAGCATCGTTTGTAAGAAATGAATGGTGTTCTTCCTCATTCGCTTTTTGGTTTCCTTGTCCTGATTAGMATTTCTTTTCTGAAATAATTTTTGTTTTGGTAGACTGTGATAACTAGAAAATACCCTATAAAAATGGAGAATTTTGACAAAAGTGATTGTATTGAGAATTGACATGGCTATGAAAGTATAGAAAATAATGTCGAGAGCATCATCCACAAAATCGCACTGTTCAGAATCATCATAAGACCAAGCGAGGTTTTTTATAGAATAGAGAGCATGACACCCTTTATCTGAAAATATGAATTATTTTTTCGTTACTTGGATGTTTCCAATCTACTAGATTGAGGTATCCATTCTATAATTTTCTTGCCGATCCGATAGACATAAATAGCAATTAATACGATAGTTGTATGTAGGATAGAGAATATTTTGGAGTATTTCATAGGAAAAAATAAAGCACAGCATCTGTTAAGAGCAACTAACACAATTTGATACTCATTTCCAAGATACAAGGTGTTGGCGATATTGATGATCCAGGATTCGACAACTGGTGGGTATGGAGAATGTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTGACATATCTCCATACACGAT</pcr_primer_p1>
		<pcr_primer_p2>TCTCAATACAATCACTTTTGTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTGACATATCTCCATACACGATGATCACTCCAAGAACTCAATCTGAATGTGAAAGTAAGATCGATAAGATAAAGGGAGTCTTGGAGCATCGTTTGTAAGAAATGAATGGTGTTCTTCCTCATTCGCTTTTTGGTTTCCTTGTCCTGATTAGCATTTCTTTTCTGAAATAATTTTTGTTTTGGTAGACTGTGATAACTAGAAAATACCCTATAAAAATGGAGAATTTTGACAAAAGTGATTGTATTGAGA</canonical_amplicon>
		<polymorphic_amplicon>ACTGACATATCTCCATACACGATGATCACTCCAAGAACTCAATCTGAATGTGAAAGTAAGATCGATAAGATAAAGGGAGTCTTGGAGCATCGTTTGTAAGAAATGAATGGTGTTCTTCCTCATTCGCTTTTTGGTTTCCTTGTCCTGATTAGMATTTCTTTTCTGAAATAATTTTTGTTTTGGTAGACTGTGATAACTAGAAAATACCCTATAAAAATGGAGAATTTTGACAAAAGTGATTGTATTGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36426</snp_id>
        <super_contig>c011100830.Contig3</super_contig>
        <contig_pos>43483</contig_pos>
        <strand>+</strand>
        <context>GTTTTAAAAC[A/T]CAACAGGGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCGACAACTGGTGGGTATGGAGAATGTCCTCTGAAATATGTTTTAAAAC</left_flank>
        <right_flank>CAACAGGGATGATTTTTTTTGAGTAACGTACAAAAGAGTTTTGGGGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTTTGGTAGACTGTGATAACTAGAAAATACCCTATAAAAATGGAGAATTTTGACAAAAGTGATTGTATTGAGAATTGACATGGCTATGAAAGTATAGAAAATAATGTCGAGAGCATCATCCACAAAATCGCACTGTTCAGAATCATCATAAGACCAAGCGAGGTTTTTTATAGAATAGAGAGCATGACACCCTTTATCTGAAAATATGAATTATTTTTTCGTTACTTGGATGTTTCCAATCTACTAGATTGAGGTATCCATTCTATAATTTTCTTGCCGATCCGATAGACATAAATAGCAATTAATACGATAGTTGTATGTAGGATAGAGAATATTTTGGAGTATTTCATAGGAAAAAATAAAGCACAGCATCTGTTAAGAGCAACTAACACAATTTGATACTCATTTCCAAGATACAAGGTGTTGGCGATATTGATGATCCAGGATTCGACAACTGGTGGGTATGGAGAATGTCCTCTGAAATATGTTTTAAAACTCAACAGGGATGATTTTTTTTGAGTAACGTACAAAAGAGTTTTGGGGAAAAATGTGATGACAAAGATTATTGTCAAAATGATAACGTTTGAAATTGCGCGACAGAAACAAATGAGATTGAAAGCAGTCTTTTCAGAATTTTCCTTGAGGTAAATGTACACAATAGAGGCATTATAAATGATCCCTAACACACCAATCTGAATGAACGAATTCAATATCTTGAGCACCAGCTGAAATTGCTTACCGTAATGATTAGCATAGCAACAACTAAATTCAAAGGATTGGTGTAATTGAACTCTTCTTCCATGATTTGGCTGAAAGAAGTATCTGAAAAAAGAATACGTGAAAACGGAAAAGTGCTTCTGAATTGGAAAGTGGAAGAACGAGAGGTCTATCCCATGGCATTCAAAAACTGTTTTTTCTGACGTGAAATCGTGTGAAAACCTAATTATCTGCCAGAAAAACTCATTGTCTTGAAGGAAAGAAACAATAAAATAAACTT</canonical>
            <polymorphic>TTGTTTTGGTAGACTGTGATAACTAGAAAATACCCTATAAAAATGGAGAATTTTGACAAAAGTGATTGTATTGAGAATTGACATGGCTATGAAAGTATAGAAAATAATGTCGAGAGCATCATCCACAAAATCGCACTGTTCAGAATCATCATAAGACCAAGCGAGGTTTTTTATAGAATAGAGAGCATGACACCCTTTATCTGAAAATATGAATTATTTTTTCGTTACTTGGATGTTTCCAATCTACTAGATTGAGGTATCCATTCTATAATTTTCTTGCCGATCCGATAGACATAAATAGCAATTAATACGATAGTTGTATGTAGGATAGAGAATATTTTGGAGTATTTCATAGGAAAAAATAAAGCACAGCATCTGTTAAGAGCAACTAACACAATTTGATACTCATTTCCAAGATACAAGGTGTTGGCGATATTGATGATCCAGGATTCGACAACTGGTGGGTATGGAGAATGTCCTCTGAAATATGTTTTAAAACWCAACAGGGATGATTTTTTTTGAGTAACGTACAAAAGAGTTTTGGGGAAAAATGTGATGACAAAGATTATTGTCAAAATGATAACGTTTGAAATTGCGCGACAGAAACAAATGAGATTGAAAGCAGTCTTTTCAGAATTTTCCTTGAGGTAAATGTACACAATAGAGGCATTATAAATGATCCCTAACACACCAATCTGAATGAACGAATTCAATATCTTGAGCACCAGCTGAAATTGCTTACCGTAATGATTAGCATAGCAACAACTAAATTCAAAGGATTGGTGTAATTGAACTCTTCTTCCATGATTTGGCTGAAAGAAGTATCTGAAAAAAGAATACGTGAAAACGGAAAAGTGCTTCTGAATTGGAAAGTGGAAGAACGAGAGGTCTATCCCATGGCATTCAAAAACTGTTTTTTCTGACGTGAAATCGTGTGAAAACCTAATTATCTGCCAGAAAAACTCATTGTCTTGAAGGAAAGAAACAATAAAATAAACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGTTAAGAGCAACTAACACAAT</pcr_primer_p1>
		<pcr_primer_p2>CTTTCAATCTCATTTGTTTCTGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTGTTAAGAGCAACTAACACAATTTGATACTCATTTCCAAGATACAAGGTGTTGGCGATATTGATGATCCAGGATTCGACAACTGGTGGGTATGGAGAATGTCCTCTGAAATATGTTTTAAAACTCAACAGGGATGATTTTTTTTGAGTAACGTACAAAAGAGTTTTGGGGAAAAATGTGATGACAAAGATTATTGTCAAAATGATAACGTTTGAAATTGCGCGACAGAAACAAATGAGATTGAAAG</canonical_amplicon>
		<polymorphic_amplicon>TCTGTTAAGAGCAACTAACACAATTTGATACTCATTTCCAAGATACAAGGTGTTGGCGATATTGATGATCCAGGATTCGACAACTGGTGGGTATGGAGAATGTCCTCTGAAATATGTTTTAAAACWCAACAGGGATGATTTTTTTTGAGTAACGTACAAAAGAGTTTTGGGGAAAAATGTGATGACAAAGATTATTGTCAAAATGATAACGTTTGAAATTGCGCGACAGAAACAAATGAGATTGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36427</snp_id>
        <super_contig>c011100830.Contig3</super_contig>
        <contig_pos>57913</contig_pos>
        <strand>+</strand>
        <context>CTATAATCGG[C/T]CTGTTTTTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAGTACAGTAATCCAGGGATTACTGTAGACTCACCCACTATAATCGG</left_flank>
        <right_flank>CTGTTTTTCAGCAGCATTGACTTGGCACCATATGGCACCAGTCCCAAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCAATTAGTAGACGCGCGGTTTGGGTGGTCTGAAATCTTTTTTGTTTAGTTTTTCTACCGTAACCTGTTTAGATTTCAAAAGTTATGAAAAATTTATTAGATTTGAATTTGTGACGTTAAGAGCTTTAAAACGAATATAGTCATGACCTATATTGGACAACTTTCATTTTCGGCCGATTCGGGCCGGCCTGAAAAGCCTAAAAATCAAATTTCAAGCTTCCCTGGCTTGTTTGTACTCATTTGGAAACTCTAATTGTGACAAGTTCAAATCCGCAATTTATTTTCCGAAAATTTGAAAATCCACAAGGTTACGGTAGATTTTCAAATTTTTGAAACTTTTTCACCTACCGTATCCAATTCCATATCGTAACTTTCCAGCTTTTCCATTGAATTTGATGTTGTATCGACTTTGAATCGATAGAGTGTGTATCTGGAAATTGCAAATTCAAAAAGTACAGTAATCCAGGGATTACTGTAGACTCACCCACTATAATCGGCCTGTTTTTCAGCAGCATTGACTTGGCACCATATGGCACCAGTCCCAAAGATGGCCAAGTAGAGGAGCCACATGCTTCTGAAATTTGAAAATTTCAGAAAATTGAGATTTTCAGTAAATCTGAAATTAAAAAAAATAATTTTTTGGAATATTTTTTTTTTGAAAAATTTCAAAAAATCTGAAAATAATTCATATTTGGTCTTATTTGAAAGATCTAAAACTGCAAAATTCAAAATTGTTAGTCTGAATTACCCTAATCAAGCTTGAAAACCATTAAAATTCGGAAAAAAGTTTTAAGTCAAAATTTTGAAATTTTTCGAAAATTTTTAAAAACAAAAAACTTCTTTCTTCTGAAATTTGAAACCAAAAAATTCAAGAAAAAAAACGGATTTTTTCTCAGAAAAATGATGATATCTAGGTGATATTTGAGAAGAAAAATGAATGAGGTAAGAGAGAAGGAACGAGGCAAAAATATTTTGAAATCAAAAATCAAAATTTCGAA</canonical>
            <polymorphic>TATCAATTAGTAGACGCGCGGTTTGGGTGGTCTGAAATCTTTTTTGTTTAGTTTTTCTACCGTAACCTGTTTAGATTTCAAAAGTTATGAAAAATTTATTAGATTTGAATTTGTGACGTTAAGAGCTTTAAAACGAATATAGTCATGACCTATATTGGACAACTTTCATTTTCGGCCGATTCGGGCCGGCCTGAAAAGCCTAAAAATCAAATTTCAAGCTTCCCTGGCTTGTTTGTACTCATTTGGAAACTCTAATTGTGACAAGTTCAAATCCGCAATTTATTTTCCGAAAATTTGAAAATCCACAAGGTTACGGTAGATTTTCAAATTTTTGAAACTTTTTCACCTACCGTATCCAATTCCATATCGTAACTTTCCAGCTTTTCCATTGAATTTGATGTTGTATCGACTTTGAATCGATAGAGTGTGTATCTGGAAATTGCAAATTCAAAAAGTACAGTAATCCAGGGATTACTGTAGACTCACCCACTATAATCGGYCTGTTTTTCAGCAGCATTGACTTGGCACCATATGGCACCAGTCCCAAAGATGGCCAAGTAGAGGAGCCACATGCTTCTGAAATTTGAAAATTTCAGAAAATTGAGATTTTCAGTAAATCTGAAATTAAAAAAAATAATTTTTTGGAATATTTTTTTTTTGAAAAATTTCAAAAAATCTGAAAATAATTCATATTTGGTCTTATTTGAAAGATCTAAAACTGCAAAATTCAAAATTGTTAGTCTGAATTACCCTAATCAAGCTTGAAAACCATTAAAATTCGGAAAAAAGTTTTAAGTCAAAATTTTGAAATTTTTCGAAAATTTTTAAAAACAAAAAACTTCTTTCTTCTGAAATTTGAAACCAAAAAATTCAAGAAAAAAAACGGATTTTTTCTCAGAAAAATGATGATATCTAGGTGATATTTGAGAAGAAAAATGAATGAGGTAAGAGAGAAGGAACGAGGCAAAAATATTTTGAAATCAAAAATCAAAATTTCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>447 310 175 54 10 4</canonical_bands>
                <polymorphic_bands>447 364 175 10 4</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>240 194 153 125 119 54 50 20 13 10 9 9 4</canonical_bands>
                <polymorphic_bands>240 194 173 153 125 50 20 13 10 9 9 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCAATTCCATATCGTAACTTT</pcr_primer_p1>
		<pcr_primer_p2>CTCCTCTACTTGGCCATCTT</pcr_primer_p2>
		<pcr_amplicon_size>213</pcr_amplicon_size>
		<canonical_amplicon>ATCCAATTCCATATCGTAACTTTCCAGCTTTTCCATTGAATTTGATGTTGTATCGACTTTGAATCGATAGAGTGTGTATCTGGAAATTGCAAATTCAAAAAGTACAGTAATCCAGGGATTACTGTAGACTCACCCACTATAATCGGCCTGTTTTTCAGCAGCATTGACTTGGCACCATATGGCACCAGTCCCAAAGATGGCCAAGTAGAGGAG</canonical_amplicon>
		<polymorphic_amplicon>ATCCAATTCCATATCGTAACTTTCCAGCTTTTCCATTGAATTTGATGTTGTATCGACTTTGAATCGATAGAGTGTGTATCTGGAAATTGCAAATTCAAAAAGTACAGTAATCCAGGGATTACTGTAGACTCACCCACTATAATCGGYCTGTTTTTCAGCAGCATTGACTTGGCACCATATGGCACCAGTCCCAAAGATGGCCAAGTAGAGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36428</snp_id>
        <super_contig>c011100830.Contig3</super_contig>
        <contig_pos>58027</contig_pos>
        <strand></strand>
        <context>agattttcag[T/A]aaatctgaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GAGCCACATGCTTCTGAAATTTGAAAATTTCAGAAAATTGAGATTTTCAG</left_flank>
        <right_flank>AAATCTGAAATTAAAAAAAATAATTTTTTGGAATATTTTTTTTTTGAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGTTAAGAGCTTTAAAACGAATATAGTCATGACCTATATTGGACAACTTTCATTTTCGGCCGATTCGGGCCGGCCTGAAAAGCCTAAAAATCAAATTTCAAGCTTCCCTGGCTTGTTTGTACTCATTTGGAAACTCTAATTGTGACAAGTTCAAATCCGCAATTTATTTTCCGAAAATTTGAAAATCCACAAGGTTACGGTAGATTTTCAAATTTTTGAAACTTTTTCACCTACCGTATCCAATTCCATATCGTAACTTTCCAGCTTTTCCATTGAATTTGATGTTGTATCGACTTTGAATCGATAGAGTGTGTATCTGGAAATTGCAAATTCAAAAAGTACAGTAATCCAGGGATTACTGTAGACTCACCCACTATAATCGGCCTGTTTTTCAGCAGCATTGACTTGGCACCATATGGCACCAGTCCCAAAGATGGCCAAGTAGAGGAGCCACATGCTTCTGAAATTTGAAAATTTCAGAAAATTGAGATTTTCAGTAAATCTGAAATTAAAAAAAATAATTTTTTGGAATATTTTTTTTTTGAAAAATTTCAAAAAATCTGAAAATAATTCATATTTGGTCTTATTTGAAAGATCTAAAACTGCAAAATTCAAAATTGTTAGTCTGAATTACCCTAATCAAGCTTGAAAACCATTAAAATTCGGAAAAAAGTTTTAAGTCAAAATTTTGAAATTTTTCGAAAATTTTTAAAAACAAAAAACTTCTTTCTTCTGAAATTTGAAACCAAAAAATTCAAGAAAAAAAACGGATTTTTTCTCAGAAAAATGATGATATCTAGGTGATATTTGAGAAGAAAAATGAATGAGGTAAGAGAGAAGGAACGAGGCAAAAATATTTTGAAATCAAAAATCAAAATTTCGAAAAATTCTGGAAATTCTTAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATCCAGA</canonical>
            <polymorphic>GACGTTAAGAGCTTTAAAACGAATATAGTCATGACCTATATTGGACAACTTTCATTTTCGGCCGATTCGGGCCGGCCTGAAAAGCCTAAAAATCAAATTTCAAGCTTCCCTGGCTTGTTTGTACTCATTTGGAAACTCTAATTGTGACAAGTTCAAATCCGCAATTTATTTTCCGAAAATTTGAAAATCCACAAGGTTACGGTAGATTTTCAAATTTTTGAAACTTTTTCACCTACCGTATCCAATTCCATATCGTAACTTTCCAGCTTTTCCATTGAATTTGATGTTGTATCGACTTTGAATCGATAGAGTGTGTATCTGGAAATTGCAAATTCAAAAAGTACAGTAATCCAGGGATTACTGTAGACTCACCCACTATAATCGGCCTGTTTTTCAGCAGCATTGACTTGGCACCATATGGCACCAGTCCCAAAGATGGCCAAGTAGAGGAGCCACATGCTTCTGAAATTTGAAAATTTCAGAAAATTGAGATTTTCAGWAAATCTGAAATTAAAAAAAATAATTTTTTGGAATATTTTTTTTTTGAAAAATTTCAAAAAATCTGAAAATAATTCATATTTGGTCTTATTTGAAAGATCTAAAACTGCAAAATTCAAAATTGTTAGTCTGAATTACCCTAATCAAGCTTGAAAACCATTAAAATTCGGAAAAAAGTTTTAAGTCAAAATTTTGAAATTTTTCGAAAATTTTTAAAAACAAAAAACTTCTTTCTTCTGAAATTTGAAACCAAAAAATTCAAGAAAAAAAACGGATTTTTTCTCAGAAAAATGATGATATCTAGGTGATATTTGAGAAGAAAAATGAATGAGGTAAGAGAGAAGGAACGAGGCAAAAATATTTTGAAATCAAAAATCAAAATTTCGAAAAATTCTGGAAATTCTTAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATCCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGGATTACTGTAGACTCACC</pcr_primer_p1>
		<pcr_primer_p2>TTTTAGATCTTTCAAATAAGACCA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CAGGGATTACTGTAGACTCACCCACTATAATCGGCCTGTTTTTCAGCAGCATTGACTTGGCACCATATGGCACCAGTCCCAAAGATGGCCAAGTAGAGGAGCCACATGCTTCTGAAATTTGAAAATTTCAGAAAATTGAGATTTTCAGTAAATCTGAAATTAAAAAAAATAATTTTTTGGAATATTTTTTTTTTGAAAAATTTCAAAAAATCTGAAAATAATTCATATTTGGTCTTATTTGAAAGATCTAAAA</canonical_amplicon>
		<polymorphic_amplicon>CAGGGATTACTGTAGACTCACCCACTATAATCGGCCTGTTTTTCAGCAGCATTGACTTGGCACCATATGGCACCAGTCCCAAAGATGGCCAAGTAGAGGAGCCACATGCTTCTGAAATTTGAAAATTTCAGAAAATTGAGATTTTCAGWAAATCTGAAATTAAAAAAAATAATTTTTTGGAATATTTTTTTTTTGAAAAATTTCAAAAAATCTGAAAATAATTCATATTTGGTCTTATTTGAAAGATCTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36429</snp_id>
        <super_contig>c011100830.Contig3</super_contig>
        <contig_pos>58144</contig_pos>
        <strand>+</strand>
        <context>GCAAAATTCA[A/T]AATTGTTAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATAATTCATATTTGGTCTTATTTGAAAGATCTAAAACTGCAAAATTCA</left_flank>
        <right_flank>AATTGTTAGTCTGAATTACCCTAATCAAGCTTGAAAACCATTAAAATTCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGTACTCATTTGGAAACTCTAATTGTGACAAGTTCAAATCCGCAATTTATTTTCCGAAAATTTGAAAATCCACAAGGTTACGGTAGATTTTCAAATTTTTGAAACTTTTTCACCTACCGTATCCAATTCCATATCGTAACTTTCCAGCTTTTCCATTGAATTTGATGTTGTATCGACTTTGAATCGATAGAGTGTGTATCTGGAAATTGCAAATTCAAAAAGTACAGTAATCCAGGGATTACTGTAGACTCACCCACTATAATCGGCCTGTTTTTCAGCAGCATTGACTTGGCACCATATGGCACCAGTCCCAAAGATGGCCAAGTAGAGGAGCCACATGCTTCTGAAATTTGAAAATTTCAGAAAATTGAGATTTTCAGTAAATCTGAAATTAAAAAAAATAATTTTTTGGAATATTTTTTTTTTGAAAAATTTCAAAAAATCTGAAAATAATTCATATTTGGTCTTATTTGAAAGATCTAAAACTGCAAAATTCAAAATTGTTAGTCTGAATTACCCTAATCAAGCTTGAAAACCATTAAAATTCGGAAAAAAGTTTTAAGTCAAAATTTTGAAATTTTTCGAAAATTTTTAAAAACAAAAAACTTCTTTCTTCTGAAATTTGAAACCAAAAAATTCAAGAAAAAAAACGGATTTTTTCTCAGAAAAATGATGATATCTAGGTGATATTTGAGAAGAAAAATGAATGAGGTAAGAGAGAAGGAACGAGGCAAAAATATTTTGAAATCAAAAATCAAAATTTCGAAAAATTCTGGAAATTCTTAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATCCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAAATCAGAAATCCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATAAAAAATGCTGTATTTTTTGAATTTC</canonical>
            <polymorphic>TTTGTACTCATTTGGAAACTCTAATTGTGACAAGTTCAAATCCGCAATTTATTTTCCGAAAATTTGAAAATCCACAAGGTTACGGTAGATTTTCAAATTTTTGAAACTTTTTCACCTACCGTATCCAATTCCATATCGTAACTTTCCAGCTTTTCCATTGAATTTGATGTTGTATCGACTTTGAATCGATAGAGTGTGTATCTGGAAATTGCAAATTCAAAAAGTACAGTAATCCAGGGATTACTGTAGACTCACCCACTATAATCGGCCTGTTTTTCAGCAGCATTGACTTGGCACCATATGGCACCAGTCCCAAAGATGGCCAAGTAGAGGAGCCACATGCTTCTGAAATTTGAAAATTTCAGAAAATTGAGATTTTCAGTAAATCTGAAATTAAAAAAAATAATTTTTTGGAATATTTTTTTTTTGAAAAATTTCAAAAAATCTGAAAATAATTCATATTTGGTCTTATTTGAAAGATCTAAAACTGCAAAATTCAWAATTGTTAGTCTGAATTACCCTAATCAAGCTTGAAAACCATTAAAATTCGGAAAAAAGTTTTAAGTCAAAATTTTGAAATTTTTCGAAAATTTTTAAAAACAAAAAACTTCTTTCTTCTGAAATTTGAAACCAAAAAATTCAAGAAAAAAAACGGATTTTTTCTCAGAAAAATGATGATATCTAGGTGATATTTGAGAAGAAAAATGAATGAGGTAAGAGAGAAGGAACGAGGCAAAAATATTTTGAAATCAAAAATCAAAATTTCGAAAAATTCTGGAAATTCTTAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATCCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAAATCAGAAATCCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATAAAAAATGCTGTATTTTTTGAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGATGGCCAAGTAGAGGAG</pcr_primer_p1>
		<pcr_primer_p2>TTTCCGAATTTTAATGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AAGATGGCCAAGTAGAGGAGCCACATGCTTCTGAAATTTGAAAATTTCAGAAAATTGAGATTTTCAGTAAATCTGAAATTAAAAAAAATAATTTTTTGGAATATTTTTTTTTTGAAAAATTTCAAAAAATCTGAAAATAATTCATATTTGGTCTTATTTGAAAGATCTAAAACTGCAAAATTCAAAATTGTTAGTCTGAATTACCCTAATCAAGCTTGAAAACCATTAAAATTCGGAAA</canonical_amplicon>
		<polymorphic_amplicon>AAGATGGCCAAGTAGAGGAGCCACATGCTTCTGAAATTTGAAAATTTCAGAAAATTGAGATTTTCAGTAAATCTGAAATTAAAAAAAATAATTTTTTGGAATATTTTTTTTTTGAAAAATTTCAAAAAATCTGAAAATAATTCATATTTGGTCTTATTTGAAAGATCTAAAACTGCAAAATTCAWAATTGTTAGTCTGAATTACCCTAATCAAGCTTGAAAACCATTAAAATTCGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36430</snp_id>
        <super_contig>c011100830.Contig3</super_contig>
        <contig_pos>58165</contig_pos>
        <strand>+</strand>
        <context>CTGAATTACC[A/C]TAATCAAGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTGAAAGATCTAAAACTGCAAAATTCAAAATTGTTAGTCTGAATTACC</left_flank>
        <right_flank>TAATCAAGCTTGAAAACCATTAAAATTCGGAAAAAAGTTTTAAGTCAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTGTGACAAGTTCAAATCCGCAATTTATTTTCCGAAAATTTGAAAATCCACAAGGTTACGGTAGATTTTCAAATTTTTGAAACTTTTTCACCTACCGTATCCAATTCCATATCGTAACTTTCCAGCTTTTCCATTGAATTTGATGTTGTATCGACTTTGAATCGATAGAGTGTGTATCTGGAAATTGCAAATTCAAAAAGTACAGTAATCCAGGGATTACTGTAGACTCACCCACTATAATCGGCCTGTTTTTCAGCAGCATTGACTTGGCACCATATGGCACCAGTCCCAAAGATGGCCAAGTAGAGGAGCCACATGCTTCTGAAATTTGAAAATTTCAGAAAATTGAGATTTTCAGTAAATCTGAAATTAAAAAAAATAATTTTTTGGAATATTTTTTTTTTGAAAAATTTCAAAAAATCTGAAAATAATTCATATTTGGTCTTATTTGAAAGATCTAAAACTGCAAAATTCAAAATTGTTAGTCTGAATTACCCTAATCAAGCTTGAAAACCATTAAAATTCGGAAAAAAGTTTTAAGTCAAAATTTTGAAATTTTTCGAAAATTTTTAAAAACAAAAAACTTCTTTCTTCTGAAATTTGAAACCAAAAAATTCAAGAAAAAAAACGGATTTTTTCTCAGAAAAATGATGATATCTAGGTGATATTTGAGAAGAAAAATGAATGAGGTAAGAGAGAAGGAACGAGGCAAAAATATTTTGAAATCAAAAATCAAAATTTCGAAAAATTCTGGAAATTCTTAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATCCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAAATCAGAAATCCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATAAAAAATGCTGTATTTTTTGAATTTCTTCTCTGAAACTTCGAAAAAT</canonical>
            <polymorphic>TAATTGTGACAAGTTCAAATCCGCAATTTATTTTCCGAAAATTTGAAAATCCACAAGGTTACGGTAGATTTTCAAATTTTTGAAACTTTTTCACCTACCGTATCCAATTCCATATCGTAACTTTCCAGCTTTTCCATTGAATTTGATGTTGTATCGACTTTGAATCGATAGAGTGTGTATCTGGAAATTGCAAATTCAAAAAGTACAGTAATCCAGGGATTACTGTAGACTCACCCACTATAATCGGCCTGTTTTTCAGCAGCATTGACTTGGCACCATATGGCACCAGTCCCAAAGATGGCCAAGTAGAGGAGCCACATGCTTCTGAAATTTGAAAATTTCAGAAAATTGAGATTTTCAGTAAATCTGAAATTAAAAAAAATAATTTTTTGGAATATTTTTTTTTTGAAAAATTTCAAAAAATCTGAAAATAATTCATATTTGGTCTTATTTGAAAGATCTAAAACTGCAAAATTCAAAATTGTTAGTCTGAATTACCMTAATCAAGCTTGAAAACCATTAAAATTCGGAAAAAAGTTTTAAGTCAAAATTTTGAAATTTTTCGAAAATTTTTAAAAACAAAAAACTTCTTTCTTCTGAAATTTGAAACCAAAAAATTCAAGAAAAAAAACGGATTTTTTCTCAGAAAAATGATGATATCTAGGTGATATTTGAGAAGAAAAATGAATGAGGTAAGAGAGAAGGAACGAGGCAAAAATATTTTGAAATCAAAAATCAAAATTTCGAAAAATTCTGGAAATTCTTAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATCCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAAATCAGAAATCCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATAAAAAATGCTGTATTTTTTGAATTTCTTCTCTGAAACTTCGAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTATTTGAAAGATCTAAAACTGC</pcr_primer_p1>
		<pcr_primer_p2>TACCTCATTCATTTTTCTTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTATTTGAAAGATCTAAAACTGCAAAATTCAAAATTGTTAGTCTGAATTACCCTAATCAAGCTTGAAAACCATTAAAATTCGGAAAAAAGTTTTAAGTCAAAATTTTGAAATTTTTCGAAAATTTTTAAAAACAAAAAACTTCTTTCTTCTGAAATTTGAAACCAAAAAATTCAAGAAAAAAAACGGATTTTTTCTCAGAAAAATGATGATATCTAGGTGATATTTGAGAAGAAAAATGAATGAGGTA</canonical_amplicon>
		<polymorphic_amplicon>TCTTATTTGAAAGATCTAAAACTGCAAAATTCAAAATTGTTAGTCTGAATTACCMTAATCAAGCTTGAAAACCATTAAAATTCGGAAAAAAGTTTTAAGTCAAAATTTTGAAATTTTTCGAAAATTTTTAAAAACAAAAAACTTCTTTCTTCTGAAATTTGAAACCAAAAAATTCAAGAAAAAAAACGGATTTTTTCTCAGAAAAATGATGATATCTAGGTGATATTTGAGAAGAAAAATGAATGAGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36431</snp_id>
        <super_contig>c011100830.Contig3</super_contig>
        <contig_pos>66926</contig_pos>
        <strand>+</strand>
        <context>ATTTTCGGTT[A/C]ATTTTAGGCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTCATAATTTCTGGACTATTTTTGATTGAAAATTTCGAATTTTCGGTT</left_flank>
        <right_flank>ATTTTAGGCCTAGAATCACTAGAAAATAGTCAAAAAATGGATTCTAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTCAGTTCATTTTAAGTCTAGAGCAACTGAAAATCAGAAAAAAACCAAAAAAAAAAATTTGTGAAATATTGGAATTTTCAGCCAAAAAATCTCAAATTTCAGAGTCATTTTTTATGGAATTTTCATGATTTCTAGACTAATTTTGATCGAAAAATTTGAATTTTCAGCTCATTTTAAGTCTAGAGCTACTGAAAATCAGAAAAATCGAAAAAAATTTTTTTTTCAAAAAATCTGAAATCTTCTTCCAATTTTTCAGATTTCTAGAATATTCAACTTTTCGTCAAAAATTGATTTTCTAGATGATTATTGATCGAAAATTTGAATTTTCGGTGTATTTTAGGCCTAGAATCACTAAAAATAGAAAAAAATTCAAAAAAAGTAGAAATTTGAAAAATCTGAAATTTTCAGCCAAAAAATCTCAAATTTCAGAGTCATTTTTTATGGAATTTTCATAATTTCTGGACTATTTTTGATTGAAAATTTCGAATTTTCGGTTAATTTTAGGCCTAGAATCACTAGAAAATAGTCAAAAAATGGATTCTAAAAAGTCAACATTTTTGGAATTTTCTAGAATCCAAAAAAAGAAGAAAAACCCCAAGAAACGAGGAAAAAACAACTACTAAATCAACGCCCCTTCTCACAATTTTCTTGTCAAATTCAAAAAAAAACGAAGAACCGGAAAAACAGAAAGCGAGAGTGACTGGTACCACCAGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>ATTTTCAGTTCATTTTAAGTCTAGAGCAACTGAAAATCAGAAAAAAACCAAAAAAAAAAATTTGTGAAATATTGGAATTTTCAGCCAAAAAATCTCAAATTTCAGAGTCATTTTTTATGGAATTTTCATGATTTCTAGACTAATTTTGATCGAAAAATTTGAATTTTCAGCTCATTTTAAGTCTAGAGCTACTGAAAATCAGAAAAATCGAAAAAAATTTTTTTTTCAAAAAATCTGAAATCTTCTTCCAATTTTTCAGATTTCTAGAATATTCAACTTTTCGTCAAAAATTGATTTTCTAGATGATTATTGATCGAAAATTTGAATTTTCGGTGTATTTTAGGCCTAGAATCACTAAAAATAGAAAAAAATTCAAAAAAAGTAGAAATTTGAAAAATCTGAAATTTTCAGCCAAAAAATCTCAAATTTCAGAGTCATTTTTTATGGAATTTTCATAATTTCTGGACTATTTTTGATTGAAAATTTCGAATTTTCGGTTMATTTTAGGCCTAGAATCACTAGAAAATAGTCAAAAAATGGATTCTAAAAAGTCAACATTTTTGGAATTTTCTAGAATCCAAAAAAAGAAGAAAAACCCCAAGAAACGAGGAAAAAACAACTACTAAATCAACGCCCCTTCTCACAATTTTCTTGTCAAATTCAAAAAAAAACGAAGAACCGGAAAAACAGAAAGCGAGAGTGACTGGTACCACCAGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 321 162 15</canonical_bands>
                <polymorphic_bands>823 162 15</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>343 80 65 58 54 45 39 34 30 25 23 23 22 22 21 17 17 16 14 13 11 9 7 6 6</canonical_bands>
                <polymorphic_bands>343 80 76 58 54 45 39 34 30 25 23 23 22 22 21 17 17 16 14 13 9 7 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAATTTTCGGTGTATTTTAGG</pcr_primer_p1>
		<pcr_primer_p2>TAGAAAATTCCAAAAATGTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGAATTTTCGGTGTATTTTAGGCCTAGAATCACTAAAAATAGAAAAAAATTCAAAAAAAGTAGAAATTTGAAAAATCTGAAATTTTCAGCCAAAAAATCTCAAATTTCAGAGTCATTTTTTATGGAATTTTCATAATTTCTGGACTATTTTTGATTGAAAATTTCGAATTTTCGGTTAATTTTAGGCCTAGAATCACTAGAAAATAGTCAAAAAATGGATTCTAAAAAGTCAACATTTTTGGAATTTTCTA</canonical_amplicon>
		<polymorphic_amplicon>TGAATTTTCGGTGTATTTTAGGCCTAGAATCACTAAAAATAGAAAAAAATTCAAAAAAAGTAGAAATTTGAAAAATCTGAAATTTTCAGCCAAAAAATCTCAAATTTCAGAGTCATTTTTTATGGAATTTTCATAATTTCTGGACTATTTTTGATTGAAAATTTCGAATTTTCGGTTMATTTTAGGCCTAGAATCACTAGAAAATAGTCAAAAAATGGATTCTAAAAAGTCAACATTTTTGGAATTTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36432</snp_id>
        <super_contig>c011100830.Contig3</super_contig>
        <contig_pos>66942</contig_pos>
        <strand>+</strand>
        <context>AGGCCTAGAA[C/T]CACTAGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTATTTTTGATTGAAAATTTCGAATTTTCGGTTAATTTTAGGCCTAGAA</left_flank>
        <right_flank>CACTAGAAAATAGTCAAAAAATGGATTCTAAAAAGTCAACATTTTTGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTCTAGAGCAACTGAAAATCAGAAAAAAACCAAAAAAAAAAATTTGTGAAATATTGGAATTTTCAGCCAAAAAATCTCAAATTTCAGAGTCATTTTTTATGGAATTTTCATGATTTCTAGACTAATTTTGATCGAAAAATTTGAATTTTCAGCTCATTTTAAGTCTAGAGCTACTGAAAATCAGAAAAATCGAAAAAAATTTTTTTTTCAAAAAATCTGAAATCTTCTTCCAATTTTTCAGATTTCTAGAATATTCAACTTTTCGTCAAAAATTGATTTTCTAGATGATTATTGATCGAAAATTTGAATTTTCGGTGTATTTTAGGCCTAGAATCACTAAAAATAGAAAAAAATTCAAAAAAAGTAGAAATTTGAAAAATCTGAAATTTTCAGCCAAAAAATCTCAAATTTCAGAGTCATTTTTTATGGAATTTTCATAATTTCTGGACTATTTTTGATTGAAAATTTCGAATTTTCGGTTAATTTTAGGCCTAGAATCACTAGAAAATAGTCAAAAAATGGATTCTAAAAAGTCAACATTTTTGGAATTTTCTAGAATCCAAAAAAAGAAGAAAAACCCCAAGAAACGAGGAAAAAACAACTACTAAATCAACGCCCCTTCTCACAATTTTCTTGTCAAATTCAAAAAAAAACGAAGAACCGGAAAAACAGAAAGCGAGAGTGACTGGTACCACCAGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>AAGTCTAGAGCAACTGAAAATCAGAAAAAAACCAAAAAAAAAAATTTGTGAAATATTGGAATTTTCAGCCAAAAAATCTCAAATTTCAGAGTCATTTTTTATGGAATTTTCATGATTTCTAGACTAATTTTGATCGAAAAATTTGAATTTTCAGCTCATTTTAAGTCTAGAGCTACTGAAAATCAGAAAAATCGAAAAAAATTTTTTTTTCAAAAAATCTGAAATCTTCTTCCAATTTTTCAGATTTCTAGAATATTCAACTTTTCGTCAAAAATTGATTTTCTAGATGATTATTGATCGAAAATTTGAATTTTCGGTGTATTTTAGGCCTAGAATCACTAAAAATAGAAAAAAATTCAAAAAAAGTAGAAATTTGAAAAATCTGAAATTTTCAGCCAAAAAATCTCAAATTTCAGAGTCATTTTTTATGGAATTTTCATAATTTCTGGACTATTTTTGATTGAAAATTTCGAATTTTCGGTTAATTTTAGGCCTAGAAYCACTAGAAAATAGTCAAAAAATGGATTCTAAAAAGTCAACATTTTTGGAATTTTCTAGAATCCAAAAAAAGAAGAAAAACCCCAAGAAACGAGGAAAAAACAACTACTAAATCAACGCCCCTTCTCACAATTTTCTTGTCAAATTCAAAAAAAAACGAAGAACCGGAAAAACAGAAAGCGAGAGTGACTGGTACCACCAGTTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>442 244 89 83 81 34 27</canonical_bands>
                <polymorphic_bands>442 244 108 89 83 34</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>442 333 164 34 27</canonical_bands>
                <polymorphic_bands>442 333 191 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAATTTTCGGTGTATTTTAGG</pcr_primer_p1>
		<pcr_primer_p2>TAGAAAATTCCAAAAATGTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGAATTTTCGGTGTATTTTAGGCCTAGAATCACTAAAAATAGAAAAAAATTCAAAAAAAGTAGAAATTTGAAAAATCTGAAATTTTCAGCCAAAAAATCTCAAATTTCAGAGTCATTTTTTATGGAATTTTCATAATTTCTGGACTATTTTTGATTGAAAATTTCGAATTTTCGGTTAATTTTAGGCCTAGAATCACTAGAAAATAGTCAAAAAATGGATTCTAAAAAGTCAACATTTTTGGAATTTTCTA</canonical_amplicon>
		<polymorphic_amplicon>TGAATTTTCGGTGTATTTTAGGCCTAGAATCACTAAAAATAGAAAAAAATTCAAAAAAAGTAGAAATTTGAAAAATCTGAAATTTTCAGCCAAAAAATCTCAAATTTCAGAGTCATTTTTTATGGAATTTTCATAATTTCTGGACTATTTTTGATTGAAAATTTCGAATTTTCGGTTAATTTTAGGCCTAGAAYCACTAGAAAATAGTCAAAAAATGGATTCTAAAAAGTCAACATTTTTGGAATTTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36436</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>6213</contig_pos>
        <strand>+</strand>
        <context>AATAAATTAC[C/T]TACATCAACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTGAGCCTTGTTAACAGATTGACACAAACAAGTAAAAAAAATAAATTAC</left_flank>
        <right_flank>TACATCAACACAAATAAAAAAGATGAAAAAAAATGAGCTGATAGAGTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAATTTTTCAAGTTCTTCATGTTCTTCTTGATCTTTATTTTTTTGTTTTTTTCTCATTTGTATATGTTGCTCGATTATTTCATTTCTTTTCTTTGGATCATATATTTCTATAAATGATGGCATTTCTTTGGGAAAGCAAACTATTTAAAATATAAAATTTTTAATTGTTTTAAATGGTTACTTCAGAAATTTTACTAGAGGGAATGAAACGAGATGTAATACGACATCAAGTAGTCTTAATTACTAACAAATTAAAATCGCTAATTCTTTCATCTAATGAAATAAAACATATGAGAAAACAAGAAATGATTAGTTATATTCTCAAACATAAAGATTTATTTGATCAAATCAATTATAAAAATATATAATTAAAAATTTTTCTTTTTAAATAAGGCCAAAGATGGACCATCTCCAAAATATGTCACGGGATGAACTTCGAAGTGAAGTAGTGAGCCTTGTTAACAGATTGACACAAACAAGTAAAAAAAATAAATTACTTACATCAACACAAATAAAAAAGATGAAAAAAAATGAGCTGATAGAGTTTATTCAACAACACCAGGTATTAGAGGTACCTCAAGAAGTAAATAACAACAACAATAATAGTAATATCGATCATTTCGAACCTTCTCTTTATCAAATCTTTCCATTTGAAGAAGGAATATTTAGCAATTATAAGGAATTTAAAGGCGTTATTAGAGAAACAAAATATGAAAATCAAAATAATGAAATTAATTTAGAAGAATATCTAGATAAGATGGAAAAAAGAGGGTTTGACTATTATCAAAAAATAATTAAGAAAAAGATAGATGCTTTTCTGAAAAAGAAAGAAAATAGTGTAATAAACGATATATTTGATGAAAATATTAAAATATCTCTTAGATTAAAATTTGAAAAAAAGAAAGATGATGTTATACAATCATTTTTTGTCCACACAAAGACTAAAGAATTATGTATTGGTGAAGATAGACAAGATTTTTATACTAGTGCATGTGAAG</canonical>
            <polymorphic>TCTAATTTTTCAAGTTCTTCATGTTCTTCTTGATCTTTATTTTTTTGTTTTTTTCTCATTTGTATATGTTGCTCGATTATTTCATTTCTTTTCTTTGGATCATATATTTCTATAAATGATGGCATTTCTTTGGGAAAGCAAACTATTTAAAATATAAAATTTTTAATTGTTTTAAATGGTTACTTCAGAAATTTTACTAGAGGGAATGAAACGAGATGTAATACGACATCAAGTAGTCTTAATTACTAACAAATTAAAATCGCTAATTCTTTCATCTAATGAAATAAAACATATGAGAAAACAAGAAATGATTAGTTATATTCTCAAACATAAAGATTTATTTGATCAAATCAATTATAAAAATATATAATTAAAAATTTTTCTTTTTAAATAAGGCCAAAGATGGACCATCTCCAAAATATGTCACGGGATGAACTTCGAAGTGAAGTAGTGAGCCTTGTTAACAGATTGACACAAACAAGTAAAAAAAATAAATTACYTACATCAACACAAATAAAAAAGATGAAAAAAAATGAGCTGATAGAGTTTATTCAACAACACCAGGTATTAGAGGTACCTCAAGAAGTAAATAACAACAACAATAATAGTAATATCGATCATTTCGAACCTTCTCTTTATCAAATCTTTCCATTTGAAGAAGGAATATTTAGCAATTATAAGGAATTTAAAGGCGTTATTAGAGAAACAAAATATGAAAATCAAAATAATGAAATTAATTTAGAAGAATATCTAGATAAGATGGAAAAAAGAGGGTTTGACTATTATCAAAAAATAATTAAGAAAAAGATAGATGCTTTTCTGAAAAAGAAAGAAAATAGTGTAATAAACGATATATTTGATGAAAATATTAAAATATCTCTTAGATTAAAATTTGAAAAAAAGAAAGATGATGTTATACAATCATTTTTTGTCCACACAAAGACTAAAGAATTATGTATTGGTGAAGATAGACAAGATTTTTATACTAGTGCATGTGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCATCTCCAAAATATGTCAC</pcr_primer_p1>
		<pcr_primer_p2>CAAATGGAAAGATTTGATAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACCATCTCCAAAATATGTCACGGGATGAACTTCGAAGTGAAGTAGTGAGCCTTGTTAACAGATTGACACAAACAAGTAAAAAAAATAAATTACTTACATCAACACAAATAAAAAAGATGAAAAAAAATGAGCTGATAGAGTTTATTCAACAACACCAGGTATTAGAGGTACCTCAAGAAGTAAATAACAACAACAATAATAGTAATATCGATCATTTCGAACCTTCTCTTTATCAAATCTTTCCATTTG</canonical_amplicon>
		<polymorphic_amplicon>GACCATCTCCAAAATATGTCACGGGATGAACTTCGAAGTGAAGTAGTGAGCCTTGTTAACAGATTGACACAAACAAGTAAAAAAAATAAATTACYTACATCAACACAAATAAAAAAGATGAAAAAAAATGAGCTGATAGAGTTTATTCAACAACACCAGGTATTAGAGGTACCTCAAGAAGTAAATAACAACAACAATAATAGTAATATCGATCATTTCGAACCTTCTCTTTATCAAATCTTTCCATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36437</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>6244</contig_pos>
        <strand>+</strand>
        <context>AGATGAAAAA[A/G]AATGAGCTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTAAAAAAAATAAATTACTTACATCAACACAAATAAAAAAGATGAAAAA</left_flank>
        <right_flank>AATGAGCTGATAGAGTTTATTCAACAACACCAGGTATTAGAGGTACCTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCTTTATTTTTTTGTTTTTTTCTCATTTGTATATGTTGCTCGATTATTTCATTTCTTTTCTTTGGATCATATATTTCTATAAATGATGGCATTTCTTTGGGAAAGCAAACTATTTAAAATATAAAATTTTTAATTGTTTTAAATGGTTACTTCAGAAATTTTACTAGAGGGAATGAAACGAGATGTAATACGACATCAAGTAGTCTTAATTACTAACAAATTAAAATCGCTAATTCTTTCATCTAATGAAATAAAACATATGAGAAAACAAGAAATGATTAGTTATATTCTCAAACATAAAGATTTATTTGATCAAATCAATTATAAAAATATATAATTAAAAATTTTTCTTTTTAAATAAGGCCAAAGATGGACCATCTCCAAAATATGTCACGGGATGAACTTCGAAGTGAAGTAGTGAGCCTTGTTAACAGATTGACACAAACAAGTAAAAAAAATAAATTACTTACATCAACACAAATAAAAAAGATGAAAAAAAATGAGCTGATAGAGTTTATTCAACAACACCAGGTATTAGAGGTACCTCAAGAAGTAAATAACAACAACAATAATAGTAATATCGATCATTTCGAACCTTCTCTTTATCAAATCTTTCCATTTGAAGAAGGAATATTTAGCAATTATAAGGAATTTAAAGGCGTTATTAGAGAAACAAAATATGAAAATCAAAATAATGAAATTAATTTAGAAGAATATCTAGATAAGATGGAAAAAAGAGGGTTTGACTATTATCAAAAAATAATTAAGAAAAAGATAGATGCTTTTCTGAAAAAGAAAGAAAATAGTGTAATAAACGATATATTTGATGAAAATATTAAAATATCTCTTAGATTAAAATTTGAAAAAAAGAAAGATGATGTTATACAATCATTTTTTGTCCACACAAAGACTAAAGAATTATGTATTGGTGAAGATAGACAAGATTTTTATACTAGTGCATGTGAAGAATTAATGAATAAAATTGAAATATTAGAATG</canonical>
            <polymorphic>GATCTTTATTTTTTTGTTTTTTTCTCATTTGTATATGTTGCTCGATTATTTCATTTCTTTTCTTTGGATCATATATTTCTATAAATGATGGCATTTCTTTGGGAAAGCAAACTATTTAAAATATAAAATTTTTAATTGTTTTAAATGGTTACTTCAGAAATTTTACTAGAGGGAATGAAACGAGATGTAATACGACATCAAGTAGTCTTAATTACTAACAAATTAAAATCGCTAATTCTTTCATCTAATGAAATAAAACATATGAGAAAACAAGAAATGATTAGTTATATTCTCAAACATAAAGATTTATTTGATCAAATCAATTATAAAAATATATAATTAAAAATTTTTCTTTTTAAATAAGGCCAAAGATGGACCATCTCCAAAATATGTCACGGGATGAACTTCGAAGTGAAGTAGTGAGCCTTGTTAACAGATTGACACAAACAAGTAAAAAAAATAAATTACTTACATCAACACAAATAAAAAAGATGAAAAARAATGAGCTGATAGAGTTTATTCAACAACACCAGGTATTAGAGGTACCTCAAGAAGTAAATAACAACAACAATAATAGTAATATCGATCATTTCGAACCTTCTCTTTATCAAATCTTTCCATTTGAAGAAGGAATATTTAGCAATTATAAGGAATTTAAAGGCGTTATTAGAGAAACAAAATATGAAAATCAAAATAATGAAATTAATTTAGAAGAATATCTAGATAAGATGGAAAAAAGAGGGTTTGACTATTATCAAAAAATAATTAAGAAAAAGATAGATGCTTTTCTGAAAAAGAAAGAAAATAGTGTAATAAACGATATATTTGATGAAAATATTAAAATATCTCTTAGATTAAAATTTGAAAAAAAGAAAGATGATGTTATACAATCATTTTTTGTCCACACAAAGACTAAAGAATTATGTATTGGTGAAGATAGACAAGATTTTTATACTAGTGCATGTGAAGAATTAATGAATAAAATTGAAATATTAGAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCATCTCCAAAATATGTCAC</pcr_primer_p1>
		<pcr_primer_p2>CAAATGGAAAGATTTGATAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACCATCTCCAAAATATGTCACGGGATGAACTTCGAAGTGAAGTAGTGAGCCTTGTTAACAGATTGACACAAACAAGTAAAAAAAATAAATTACTTACATCAACACAAATAAAAAAGATGAAAAAAAATGAGCTGATAGAGTTTATTCAACAACACCAGGTATTAGAGGTACCTCAAGAAGTAAATAACAACAACAATAATAGTAATATCGATCATTTCGAACCTTCTCTTTATCAAATCTTTCCATTTG</canonical_amplicon>
		<polymorphic_amplicon>GACCATCTCCAAAATATGTCACGGGATGAACTTCGAAGTGAAGTAGTGAGCCTTGTTAACAGATTGACACAAACAAGTAAAAAAAATAAATTACTTACATCAACACAAATAAAAAAGATGAAAAARAATGAGCTGATAGAGTTTATTCAACAACACCAGGTATTAGAGGTACCTCAAGAAGTAAATAACAACAACAATAATAGTAATATCGATCATTTCGAACCTTCTCTTTATCAAATCTTTCCATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36438</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>6269</contig_pos>
        <strand>+</strand>
        <context>GTTTATTCAA[A/C]AACAYCAGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAACACAAATAAAAAAGATGAAAAAAAATGAGCTGATAGAGTTTATTCAA</left_flank>
        <right_flank>AACACCAGGTATTAGAGGTACCTCAAGAAGTAAATAACAACAACAATAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTGTATATGTTGCTCGATTATTTCATTTCTTTTCTTTGGATCATATATTTCTATAAATGATGGCATTTCTTTGGGAAAGCAAACTATTTAAAATATAAAATTTTTAATTGTTTTAAATGGTTACTTCAGAAATTTTACTAGAGGGAATGAAACGAGATGTAATACGACATCAAGTAGTCTTAATTACTAACAAATTAAAATCGCTAATTCTTTCATCTAATGAAATAAAACATATGAGAAAACAAGAAATGATTAGTTATATTCTCAAACATAAAGATTTATTTGATCAAATCAATTATAAAAATATATAATTAAAAATTTTTCTTTTTAAATAAGGCCAAAGATGGACCATCTCCAAAATATGTCACGGGATGAACTTCGAAGTGAAGTAGTGAGCCTTGTTAACAGATTGACACAAACAAGTAAAAAAAATAAATTACTTACATCAACACAAATAAAAAAGATGAAAAAAAATGAGCTGATAGAGTTTATTCAACAACACCAGGTATTAGAGGTACCTCAAGAAGTAAATAACAACAACAATAATAGTAATATCGATCATTTCGAACCTTCTCTTTATCAAATCTTTCCATTTGAAGAAGGAATATTTAGCAATTATAAGGAATTTAAAGGCGTTATTAGAGAAACAAAATATGAAAATCAAAATAATGAAATTAATTTAGAAGAATATCTAGATAAGATGGAAAAAAGAGGGTTTGACTATTATCAAAAAATAATTAAGAAAAAGATAGATGCTTTTCTGAAAAAGAAAGAAAATAGTGTAATAAACGATATATTTGATGAAAATATTAAAATATCTCTTAGATTAAAATTTGAAAAAAAGAAAGATGATGTTATACAATCATTTTTTGTCCACACAAAGACTAAAGAATTATGTATTGGTGAAGATAGACAAGATTTTTATACTAGTGCATGTGAAGAATTAATGAATAAAATTGAAATATTAGAATGTAAAGGTTCAGGTTGGTATTTAAAT</canonical>
            <polymorphic>CATTTGTATATGTTGCTCGATTATTTCATTTCTTTTCTTTGGATCATATATTTCTATAAATGATGGCATTTCTTTGGGAAAGCAAACTATTTAAAATATAAAATTTTTAATTGTTTTAAATGGTTACTTCAGAAATTTTACTAGAGGGAATGAAACGAGATGTAATACGACATCAAGTAGTCTTAATTACTAACAAATTAAAATCGCTAATTCTTTCATCTAATGAAATAAAACATATGAGAAAACAAGAAATGATTAGTTATATTCTCAAACATAAAGATTTATTTGATCAAATCAATTATAAAAATATATAATTAAAAATTTTTCTTTTTAAATAAGGCCAAAGATGGACCATCTCCAAAATATGTCACGGGATGAACTTCGAAGTGAAGTAGTGAGCCTTGTTAACAGATTGACACAAACAAGTAAAAAAAATAAATTACTTACATCAACACAAATAAAAAAGATGAAAAAAAATGAGCTGATAGAGTTTATTCAAMAACACCAGGTATTAGAGGTACCTCAAGAAGTAAATAACAACAACAATAATAGTAATATCGATCATTTCGAACCTTCTCTTTATCAAATCTTTCCATTTGAAGAAGGAATATTTAGCAATTATAAGGAATTTAAAGGCGTTATTAGAGAAACAAAATATGAAAATCAAAATAATGAAATTAATTTAGAAGAATATCTAGATAAGATGGAAAAAAGAGGGTTTGACTATTATCAAAAAATAATTAAGAAAAAGATAGATGCTTTTCTGAAAAAGAAAGAAAATAGTGTAATAAACGATATATTTGATGAAAATATTAAAATATCTCTTAGATTAAAATTTGAAAAAAAGAAAGATGATGTTATACAATCATTTTTTGTCCACACAAAGACTAAAGAATTATGTATTGGTGAAGATAGACAAGATTTTTATACTAGTGCATGTGAAGAATTAATGAATAAAATTGAAATATTAGAATGTAAAGGTTCAGGTTGGTATTTAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCATCTCCAAAATATGTCAC</pcr_primer_p1>
		<pcr_primer_p2>CAAATGGAAAGATTTGATAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACCATCTCCAAAATATGTCACGGGATGAACTTCGAAGTGAAGTAGTGAGCCTTGTTAACAGATTGACACAAACAAGTAAAAAAAATAAATTACTTACATCAACACAAATAAAAAAGATGAAAAAAAATGAGCTGATAGAGTTTATTCAACAACACCAGGTATTAGAGGTACCTCAAGAAGTAAATAACAACAACAATAATAGTAATATCGATCATTTCGAACCTTCTCTTTATCAAATCTTTCCATTTG</canonical_amplicon>
		<polymorphic_amplicon>GACCATCTCCAAAATATGTCACGGGATGAACTTCGAAGTGAAGTAGTGAGCCTTGTTAACAGATTGACACAAACAAGTAAAAAAAATAAATTACTTACATCAACACAAATAAAAAAGATGAAAAAAAATGAGCTGATAGAGTTTATTCAAMAACACCAGGTATTAGAGGTACCTCAAGAAGTAAATAACAACAACAATAATAGTAATATCGATCATTTCGAACCTTCTCTTTATCAAATCTTTCCATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36439</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>6274</contig_pos>
        <strand>+</strand>
        <context>TTCAAMAACA[C/T]CAGGTATTAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAATAAAAAAGATGAAAAAAAATGAGCTGATAGAGTTTATTCAACAACA</left_flank>
        <right_flank>CAGGTATTAGAGGTACCTCAAGAAGTAAATAACAACAACAATAATAGTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATATGTTGCTCGATTATTTCATTTCTTTTCTTTGGATCATATATTTCTATAAATGATGGCATTTCTTTGGGAAAGCAAACTATTTAAAATATAAAATTTTTAATTGTTTTAAATGGTTACTTCAGAAATTTTACTAGAGGGAATGAAACGAGATGTAATACGACATCAAGTAGTCTTAATTACTAACAAATTAAAATCGCTAATTCTTTCATCTAATGAAATAAAACATATGAGAAAACAAGAAATGATTAGTTATATTCTCAAACATAAAGATTTATTTGATCAAATCAATTATAAAAATATATAATTAAAAATTTTTCTTTTTAAATAAGGCCAAAGATGGACCATCTCCAAAATATGTCACGGGATGAACTTCGAAGTGAAGTAGTGAGCCTTGTTAACAGATTGACACAAACAAGTAAAAAAAATAAATTACTTACATCAACACAAATAAAAAAGATGAAAAAAAATGAGCTGATAGAGTTTATTCAACAACACCAGGTATTAGAGGTACCTCAAGAAGTAAATAACAACAACAATAATAGTAATATCGATCATTTCGAACCTTCTCTTTATCAAATCTTTCCATTTGAAGAAGGAATATTTAGCAATTATAAGGAATTTAAAGGCGTTATTAGAGAAACAAAATATGAAAATCAAAATAATGAAATTAATTTAGAAGAATATCTAGATAAGATGGAAAAAAGAGGGTTTGACTATTATCAAAAAATAATTAAGAAAAAGATAGATGCTTTTCTGAAAAAGAAAGAAAATAGTGTAATAAACGATATATTTGATGAAAATATTAAAATATCTCTTAGATTAAAATTTGAAAAAAAGAAAGATGATGTTATACAATCATTTTTTGTCCACACAAAGACTAAAGAATTATGTATTGGTGAAGATAGACAAGATTTTTATACTAGTGCATGTGAAGAATTAATGAATAAAATTGAAATATTAGAATGTAAAGGTTCAGGTTGGTATTTAAATAAAAT</canonical>
            <polymorphic>GTATATGTTGCTCGATTATTTCATTTCTTTTCTTTGGATCATATATTTCTATAAATGATGGCATTTCTTTGGGAAAGCAAACTATTTAAAATATAAAATTTTTAATTGTTTTAAATGGTTACTTCAGAAATTTTACTAGAGGGAATGAAACGAGATGTAATACGACATCAAGTAGTCTTAATTACTAACAAATTAAAATCGCTAATTCTTTCATCTAATGAAATAAAACATATGAGAAAACAAGAAATGATTAGTTATATTCTCAAACATAAAGATTTATTTGATCAAATCAATTATAAAAATATATAATTAAAAATTTTTCTTTTTAAATAAGGCCAAAGATGGACCATCTCCAAAATATGTCACGGGATGAACTTCGAAGTGAAGTAGTGAGCCTTGTTAACAGATTGACACAAACAAGTAAAAAAAATAAATTACTTACATCAACACAAATAAAAAAGATGAAAAAAAATGAGCTGATAGAGTTTATTCAACAACAYCAGGTATTAGAGGTACCTCAAGAAGTAAATAACAACAACAATAATAGTAATATCGATCATTTCGAACCTTCTCTTTATCAAATCTTTCCATTTGAAGAAGGAATATTTAGCAATTATAAGGAATTTAAAGGCGTTATTAGAGAAACAAAATATGAAAATCAAAATAATGAAATTAATTTAGAAGAATATCTAGATAAGATGGAAAAAAGAGGGTTTGACTATTATCAAAAAATAATTAAGAAAAAGATAGATGCTTTTCTGAAAAAGAAAGAAAATAGTGTAATAAACGATATATTTGATGAAAATATTAAAATATCTCTTAGATTAAAATTTGAAAAAAAGAAAGATGATGTTATACAATCATTTTTTGTCCACACAAAGACTAAAGAATTATGTATTGGTGAAGATAGACAAGATTTTTATACTAGTGCATGTGAAGAATTAATGAATAAAATTGAAATATTAGAATGTAAAGGTTCAGGTTGGTATTTAAATAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>365 281 94 64 50 36 27 27 21 19 8 6 2</canonical_bands>
                <polymorphic_bands>365 331 94 64 36 27 27 21 19 8 6 2</polymorphic_bands>
            </assay>
            <assay>
                <site>ACCWGGT</site>
                <isoschizomers>
                    <enzyme>MabI</enzyme>
                    <enzyme>SexAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACCATCTCCAAAATATGTCAC</pcr_primer_p1>
		<pcr_primer_p2>CAAATGGAAAGATTTGATAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACCATCTCCAAAATATGTCACGGGATGAACTTCGAAGTGAAGTAGTGAGCCTTGTTAACAGATTGACACAAACAAGTAAAAAAAATAAATTACTTACATCAACACAAATAAAAAAGATGAAAAAAAATGAGCTGATAGAGTTTATTCAACAACACCAGGTATTAGAGGTACCTCAAGAAGTAAATAACAACAACAATAATAGTAATATCGATCATTTCGAACCTTCTCTTTATCAAATCTTTCCATTTG</canonical_amplicon>
		<polymorphic_amplicon>GACCATCTCCAAAATATGTCACGGGATGAACTTCGAAGTGAAGTAGTGAGCCTTGTTAACAGATTGACACAAACAAGTAAAAAAAATAAATTACTTACATCAACACAAATAAAAAAGATGAAAAAAAATGAGCTGATAGAGTTTATTCAACAACAYCAGGTATTAGAGGTACCTCAAGAAGTAAATAACAACAACAATAATAGTAATATCGATCATTTCGAACCTTCTCTTTATCAAATCTTTCCATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36440</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>6313</contig_pos>
        <strand>+</strand>
        <context>ATAACAACAA[C/T]AATAATAGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCAACAACACCAGGTATTAGAGGTACCTCAAGAAGTAAATAACAACAA</left_flank>
        <right_flank>AATAATAGTAATATCGATCATTTCGAACCTTCTCTTTATCAAATCTTTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATATATTTCTATAAATGATGGCATTTCTTTGGGAAAGCAAACTATTTAAAATATAAAATTTTTAATTGTTTTAAATGGTTACTTCAGAAATTTTACTAGAGGGAATGAAACGAGATGTAATACGACATCAAGTAGTCTTAATTACTAACAAATTAAAATCGCTAATTCTTTCATCTAATGAAATAAAACATATGAGAAAACAAGAAATGATTAGTTATATTCTCAAACATAAAGATTTATTTGATCAAATCAATTATAAAAATATATAATTAAAAATTTTTCTTTTTAAATAAGGCCAAAGATGGACCATCTCCAAAATATGTCACGGGATGAACTTCGAAGTGAAGTAGTGAGCCTTGTTAACAGATTGACACAAACAAGTAAAAAAAATAAATTACTTACATCAACACAAATAAAAAAGATGAAAAAAAATGAGCTGATAGAGTTTATTCAACAACACCAGGTATTAGAGGTACCTCAAGAAGTAAATAACAACAACAATAATAGTAATATCGATCATTTCGAACCTTCTCTTTATCAAATCTTTCCATTTGAAGAAGGAATATTTAGCAATTATAAGGAATTTAAAGGCGTTATTAGAGAAACAAAATATGAAAATCAAAATAATGAAATTAATTTAGAAGAATATCTAGATAAGATGGAAAAAAGAGGGTTTGACTATTATCAAAAAATAATTAAGAAAAAGATAGATGCTTTTCTGAAAAAGAAAGAAAATAGTGTAATAAACGATATATTTGATGAAAATATTAAAATATCTCTTAGATTAAAATTTGAAAAAAAGAAAGATGATGTTATACAATCATTTTTTGTCCACACAAAGACTAAAGAATTATGTATTGGTGAAGATAGACAAGATTTTTATACTAGTGCATGTGAAGAATTAATGAATAAAATTGAAATATTAGAATGTAAAGGTTCAGGTTGGTATTTAAATAAAATATGCACTTTATATATGAATCAAACTAAAATAAAACAGTT</canonical>
            <polymorphic>CATATATTTCTATAAATGATGGCATTTCTTTGGGAAAGCAAACTATTTAAAATATAAAATTTTTAATTGTTTTAAATGGTTACTTCAGAAATTTTACTAGAGGGAATGAAACGAGATGTAATACGACATCAAGTAGTCTTAATTACTAACAAATTAAAATCGCTAATTCTTTCATCTAATGAAATAAAACATATGAGAAAACAAGAAATGATTAGTTATATTCTCAAACATAAAGATTTATTTGATCAAATCAATTATAAAAATATATAATTAAAAATTTTTCTTTTTAAATAAGGCCAAAGATGGACCATCTCCAAAATATGTCACGGGATGAACTTCGAAGTGAAGTAGTGAGCCTTGTTAACAGATTGACACAAACAAGTAAAAAAAATAAATTACTTACATCAACACAAATAAAAAAGATGAAAAAAAATGAGCTGATAGAGTTTATTCAACAACACCAGGTATTAGAGGTACCTCAAGAAGTAAATAACAACAAYAATAATAGTAATATCGATCATTTCGAACCTTCTCTTTATCAAATCTTTCCATTTGAAGAAGGAATATTTAGCAATTATAAGGAATTTAAAGGCGTTATTAGAGAAACAAAATATGAAAATCAAAATAATGAAATTAATTTAGAAGAATATCTAGATAAGATGGAAAAAAGAGGGTTTGACTATTATCAAAAAATAATTAAGAAAAAGATAGATGCTTTTCTGAAAAAGAAAGAAAATAGTGTAATAAACGATATATTTGATGAAAATATTAAAATATCTCTTAGATTAAAATTTGAAAAAAAGAAAGATGATGTTATACAATCATTTTTTGTCCACACAAAGACTAAAGAATTATGTATTGGTGAAGATAGACAAGATTTTTATACTAGTGCATGTGAAGAATTAATGAATAAAATTGAAATATTAGAATGTAAAGGTTCAGGTTGGTATTTAAATAAAATATGCACTTTATATATGAATCAAACTAAAATAAAACAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCATCTCCAAAATATGTCAC</pcr_primer_p1>
		<pcr_primer_p2>CAAATGGAAAGATTTGATAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACCATCTCCAAAATATGTCACGGGATGAACTTCGAAGTGAAGTAGTGAGCCTTGTTAACAGATTGACACAAACAAGTAAAAAAAATAAATTACTTACATCAACACAAATAAAAAAGATGAAAAAAAATGAGCTGATAGAGTTTATTCAACAACACCAGGTATTAGAGGTACCTCAAGAAGTAAATAACAACAACAATAATAGTAATATCGATCATTTCGAACCTTCTCTTTATCAAATCTTTCCATTTG</canonical_amplicon>
		<polymorphic_amplicon>GACCATCTCCAAAATATGTCACGGGATGAACTTCGAAGTGAAGTAGTGAGCCTTGTTAACAGATTGACACAAACAAGTAAAAAAAATAAATTACTTACATCAACACAAATAAAAAAGATGAAAAAAAATGAGCTGATAGAGTTTATTCAACAACACCAGGTATTAGAGGTACCTCAAGAAGTAAATAACAACAAYAATAATAGTAATATCGATCATTTCGAACCTTCTCTTTATCAAATCTTTCCATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36441</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>102788</contig_pos>
        <strand></strand>
        <context>TGGATAGAGA[T/C]GAATGATTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTTTCAGGACTGTTCGATGTCAGGAAATGCATTCGATTTGGATAGAGA</left_flank>
        <right_flank>GAATGATTTCAGCTCAAAGGTCCAGTACATCACTTCGAAAAAGTTTGAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACGGACACAGTCTGCGTCTCTTCACTCGTCCCCTCTCCCTCGTTGCTTCTTCCATCTAGCTCCATCTCCTCATTCGCATTCCTATGACTGGTATCTGATTTTCACCGGTCTTTTGTTATTGATTTTCGGAAAAAGTTCATTTGCTTGTTTCTTATTTATTTCTATATGGATTTTCGAAAAAGAGGTGAGATTTCTGGTTTTTACTATGAGAAAATTTTCAACAAAAAGAGGAGAAAGTGTTTGATGACCATGAAATCTAGACTTGTAAGAAAATGGCTGTCCGGACCCGGTCATCCACATTTATCAGGTTTATGTAAGACCATTTATGGACTACCAACTTAAACATTTCACAATAAATATTAAAAAAACTGGAATCTCTGTGTTTCTGTGGGGATCCAAATGAAGTCAATTTTTTTAAAAAAATTCATTAAAAAAAATAACTATTTCTTTTTTCAGGACTGTTCGATGTCAGGAAATGCATTCGATTTGGATAGAGATGAATGATTTCAGCTCAAAGGTCCAGTACATCACTTCGAAAAAGTTTGAGACAAACTGCGGGATTCGATGCTCTGGAGGATAAAATTCCACTCCGATTGCACTCCCCTGTCCGAACTACAAAGTAAGTTTATTTAGCGATTTTTGAAGGAAACAATGTGAATTTTTTCAAAAGCGGTTCAAAGACGGTGGTAGCAAGGATCAATTGGCCCGAGATTGCGAAATCCGACCAAGCGCCGCCACGAGAGATCTCCTGTGAGCAAAAGAACAAAAGTAGTGAACGGGACGCCAAGGTTCGTCGTGATCGTGATGAAGACTATCATGGTGGAGAGCACCGTCACAACGGCGAATCTCGTGCAAGTTCTCCGACGAACAAACGATATGATAGCCCCAGTAAACCCAAGACTTTTGATTCTACGACCAGCGATTGACACTGACAAGATGTTTGCTGCTTCTCGATTCTGTATTTTATTTTAATTTTTTCACTTTTGAACTTCAATAAG</canonical>
            <polymorphic>CCACGGACACAGTCTGCGTCTCTTCACTCGTCCCCTCTCCCTCGTTGCTTCTTCCATCTAGCTCCATCTCCTCATTCGCATTCCTATGACTGGTATCTGATTTTCACCGGTCTTTTGTTATTGATTTTCGGAAAAAGTTCATTTGCTTGTTTCTTATTTATTTCTATATGGATTTTCGAAAAAGAGGTGAGATTTCTGGTTTTTACTATGAGAAAATTTTCAACAAAAAGAGGAGAAAGTGTTTGATGACCATGAAATCTAGACTTGTAAGAAAATGGCTGTCCGGACCCGGTCATCCACATTTATCAGGTTTATGTAAGACCATTTATGGACTACCAACTTAAACATTTCACAATAAATATTAAAAAAACTGGAATCTCTGTGTTTCTGTGGGGATCCAAATGAAGTCAATTTTTTTAAAAAAATTCATTAAAAAAAATAACTATTTCTTTTTTCAGGACTGTTCGATGTCAGGAAATGCATTCGATTTGGATAGAGAYGAATGATTTCAGCTCAAAGGTCCAGTACATCACTTCGAAAAAGTTTGAGACAAACTGCGGGATTCGATGCTCTGGAGGATAAAATTCCACTCCGATTGCACTCCCCTGTCCGAACTACAAAGTAAGTTTATTTAGCGATTTTTGAAGGAAACAATGTGAATTTTTTCAAAAGCGGTTCAAAGACGGTGGTAGCAAGGATCAATTGGCCCGAGATTGCGAAATCCGACCAAGCGCCGCCACGAGAGATCTCCTGTGAGCAAAAGAACAAAAGTAGTGAACGGGACGCCAAGGTTCGTCGTGATCGTGATGAAGACTATCATGGTGGAGAGCACCGTCACAACGGCGAATCTCGTGCAAGTTCTCCGACGAACAAACGATATGATAGCCCCAGTAAACCCAAGACTTTTGATTCTACGACCAGCGATTGACACTGACAAGATGTTTGCTGCTTCTCGATTCTGTATTTTATTTTAATTTTTTCACTTTTGAACTTCAATAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAACTTAAACATTTCACAATAAA</pcr_primer_p1>
		<pcr_primer_p2>GGAATTTTATCCTCCAGAGC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CCAACTTAAACATTTCACAATAAATATTAAAAAAACTGGAATCTCTGTGTTTCTGTGGGGATCCAAATGAAGTCAATTTTTTTAAAAAAATTCATTAAAAAAAATAACTATTTCTTTTTTCAGGACTGTTCGATGTCAGGAAATGCATTCGATTTGGATAGAGATGAATGATTTCAGCTCAAAGGTCCAGTACATCACTTCGAAAAAGTTTGAGACAAACTGCGGGATTCGATGCTCTGGAGGATAAAATTCC</canonical_amplicon>
		<polymorphic_amplicon>CCAACTTAAACATTTCACAATAAATATTAAAAAAACTGGAATCTCTGTGTTTCTGTGGGGATCCAAATGAAGTCAATTTTTTTAAAAAAATTCATTAAAAAAAATAACTATTTCTTTTTTCAGGACTGTTCGATGTCAGGAAATGCATTCGATTTGGATAGAGAYGAATGATTTCAGCTCAAAGGTCCAGTACATCACTTCGAAAAAGTTTGAGACAAACTGCGGGATTCGATGCTCTGGAGGATAAAATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36442</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>102822</contig_pos>
        <strand></strand>
        <context>AGTACATCAC[T/C]TCGAAAAAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCGATTTGGATAGAGATGAATGATTTCAGCTCAAAGGTCCAGTACATCAC</left_flank>
        <right_flank>TCGAAAAAGTTTGAGACAAACTGCGGGATTCGATGCTCTGGAGGATAAAA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTCCCTCGTTGCTTCTTCCATCTAGCTCCATCTCCTCATTCGCATTCCTATGACTGGTATCTGATTTTCACCGGTCTTTTGTTATTGATTTTCGGAAAAAGTTCATTTGCTTGTTTCTTATTTATTTCTATATGGATTTTCGAAAAAGAGGTGAGATTTCTGGTTTTTACTATGAGAAAATTTTCAACAAAAAGAGGAGAAAGTGTTTGATGACCATGAAATCTAGACTTGTAAGAAAATGGCTGTCCGGACCCGGTCATCCACATTTATCAGGTTTATGTAAGACCATTTATGGACTACCAACTTAAACATTTCACAATAAATATTAAAAAAACTGGAATCTCTGTGTTTCTGTGGGGATCCAAATGAAGTCAATTTTTTTAAAAAAATTCATTAAAAAAAATAACTATTTCTTTTTTCAGGACTGTTCGATGTCAGGAAATGCATTCGATTTGGATAGAGATGAATGATTTCAGCTCAAAGGTCCAGTACATCACTTCGAAAAAGTTTGAGACAAACTGCGGGATTCGATGCTCTGGAGGATAAAATTCCACTCCGATTGCACTCCCCTGTCCGAACTACAAAGTAAGTTTATTTAGCGATTTTTGAAGGAAACAATGTGAATTTTTTCAAAAGCGGTTCAAAGACGGTGGTAGCAAGGATCAATTGGCCCGAGATTGCGAAATCCGACCAAGCGCCGCCACGAGAGATCTCCTGTGAGCAAAAGAACAAAAGTAGTGAACGGGACGCCAAGGTTCGTCGTGATCGTGATGAAGACTATCATGGTGGAGAGCACCGTCACAACGGCGAATCTCGTGCAAGTTCTCCGACGAACAAACGATATGATAGCCCCAGTAAACCCAAGACTTTTGATTCTACGACCAGCGATTGACACTGACAAGATGTTTGCTGCTTCTCGATTCTGTATTTTATTTTAATTTTTTCACTTTTGAACTTCAATAAGTAATTGGTAAATGACAACGTCGATTGAATAAATG</canonical>
            <polymorphic>CTCTCCCTCGTTGCTTCTTCCATCTAGCTCCATCTCCTCATTCGCATTCCTATGACTGGTATCTGATTTTCACCGGTCTTTTGTTATTGATTTTCGGAAAAAGTTCATTTGCTTGTTTCTTATTTATTTCTATATGGATTTTCGAAAAAGAGGTGAGATTTCTGGTTTTTACTATGAGAAAATTTTCAACAAAAAGAGGAGAAAGTGTTTGATGACCATGAAATCTAGACTTGTAAGAAAATGGCTGTCCGGACCCGGTCATCCACATTTATCAGGTTTATGTAAGACCATTTATGGACTACCAACTTAAACATTTCACAATAAATATTAAAAAAACTGGAATCTCTGTGTTTCTGTGGGGATCCAAATGAAGTCAATTTTTTTAAAAAAATTCATTAAAAAAAATAACTATTTCTTTTTTCAGGACTGTTCGATGTCAGGAAATGCATTCGATTTGGATAGAGATGAATGATTTCAGCTCAAAGGTCCAGTACATCACYTCGAAAAAGTTTGAGACAAACTGCGGGATTCGATGCTCTGGAGGATAAAATTCCACTCCGATTGCACTCCCCTGTCCGAACTACAAAGTAAGTTTATTTAGCGATTTTTGAAGGAAACAATGTGAATTTTTTCAAAAGCGGTTCAAAGACGGTGGTAGCAAGGATCAATTGGCCCGAGATTGCGAAATCCGACCAAGCGCCGCCACGAGAGATCTCCTGTGAGCAAAAGAACAAAAGTAGTGAACGGGACGCCAAGGTTCGTCGTGATCGTGATGAAGACTATCATGGTGGAGAGCACCGTCACAACGGCGAATCTCGTGCAAGTTCTCCGACGAACAAACGATATGATAGCCCCAGTAAACCCAAGACTTTTGATTCTACGACCAGCGATTGACACTGACAAGATGTTTGCTGCTTCTCGATTCTGTATTTTATTTTAATTTTTTCACTTTTGAACTTCAATAAGTAATTGGTAAATGACAACGTCGATTGAATAAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>499 359 142</canonical_bands>
                <polymorphic_bands>858 142</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAACTTAAACATTTCACAATAAA</pcr_primer_p1>
		<pcr_primer_p2>GGAATTTTATCCTCCAGAGC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CCAACTTAAACATTTCACAATAAATATTAAAAAAACTGGAATCTCTGTGTTTCTGTGGGGATCCAAATGAAGTCAATTTTTTTAAAAAAATTCATTAAAAAAAATAACTATTTCTTTTTTCAGGACTGTTCGATGTCAGGAAATGCATTCGATTTGGATAGAGATGAATGATTTCAGCTCAAAGGTCCAGTACATCACTTCGAAAAAGTTTGAGACAAACTGCGGGATTCGATGCTCTGGAGGATAAAATTCC</canonical_amplicon>
		<polymorphic_amplicon>CCAACTTAAACATTTCACAATAAATATTAAAAAAACTGGAATCTCTGTGTTTCTGTGGGGATCCAAATGAAGTCAATTTTTTTAAAAAAATTCATTAAAAAAAATAACTATTTCTTTTTTCAGGACTGTTCGATGTCAGGAAATGCATTCGATTTGGATAGAGATGAATGATTTCAGCTCAAAGGTCCAGTACATCACYTCGAAAAAGTTTGAGACAAACTGCGGGATTCGATGCTCTGGAGGATAAAATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36443</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>102833</contig_pos>
        <strand></strand>
        <context>TCGAAAAAGT[T/G]TGAGACAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AGAGATGAATGATTTCAGCTCAAAGGTCCAGTACATCACTTCGAAAAAGT</left_flank>
        <right_flank>TGAGACAAACTGCGGGATTCGATGCTCTGGAGGATAAAATTCCACTCCGA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTTCTTCCATCTAGCTCCATCTCCTCATTCGCATTCCTATGACTGGTATCTGATTTTCACCGGTCTTTTGTTATTGATTTTCGGAAAAAGTTCATTTGCTTGTTTCTTATTTATTTCTATATGGATTTTCGAAAAAGAGGTGAGATTTCTGGTTTTTACTATGAGAAAATTTTCAACAAAAAGAGGAGAAAGTGTTTGATGACCATGAAATCTAGACTTGTAAGAAAATGGCTGTCCGGACCCGGTCATCCACATTTATCAGGTTTATGTAAGACCATTTATGGACTACCAACTTAAACATTTCACAATAAATATTAAAAAAACTGGAATCTCTGTGTTTCTGTGGGGATCCAAATGAAGTCAATTTTTTTAAAAAAATTCATTAAAAAAAATAACTATTTCTTTTTTCAGGACTGTTCGATGTCAGGAAATGCATTCGATTTGGATAGAGATGAATGATTTCAGCTCAAAGGTCCAGTACATCACTTCGAAAAAGTTTGAGACAAACTGCGGGATTCGATGCTCTGGAGGATAAAATTCCACTCCGATTGCACTCCCCTGTCCGAACTACAAAGTAAGTTTATTTAGCGATTTTTGAAGGAAACAATGTGAATTTTTTCAAAAGCGGTTCAAAGACGGTGGTAGCAAGGATCAATTGGCCCGAGATTGCGAAATCCGACCAAGCGCCGCCACGAGAGATCTCCTGTGAGCAAAAGAACAAAAGTAGTGAACGGGACGCCAAGGTTCGTCGTGATCGTGATGAAGACTATCATGGTGGAGAGCACCGTCACAACGGCGAATCTCGTGCAAGTTCTCCGACGAACAAACGATATGATAGCCCCAGTAAACCCAAGACTTTTGATTCTACGACCAGCGATTGACACTGACAAGATGTTTGCTGCTTCTCGATTCTGTATTTTATTTTAATTTTTTCACTTTTGAACTTCAATAAGTAATTGGTAAATGACAACGTCGATTGAATAAATGACACTTTTTAA</canonical>
            <polymorphic>TGCTTCTTCCATCTAGCTCCATCTCCTCATTCGCATTCCTATGACTGGTATCTGATTTTCACCGGTCTTTTGTTATTGATTTTCGGAAAAAGTTCATTTGCTTGTTTCTTATTTATTTCTATATGGATTTTCGAAAAAGAGGTGAGATTTCTGGTTTTTACTATGAGAAAATTTTCAACAAAAAGAGGAGAAAGTGTTTGATGACCATGAAATCTAGACTTGTAAGAAAATGGCTGTCCGGACCCGGTCATCCACATTTATCAGGTTTATGTAAGACCATTTATGGACTACCAACTTAAACATTTCACAATAAATATTAAAAAAACTGGAATCTCTGTGTTTCTGTGGGGATCCAAATGAAGTCAATTTTTTTAAAAAAATTCATTAAAAAAAATAACTATTTCTTTTTTCAGGACTGTTCGATGTCAGGAAATGCATTCGATTTGGATAGAGATGAATGATTTCAGCTCAAAGGTCCAGTACATCACTTCGAAAAAGTKTGAGACAAACTGCGGGATTCGATGCTCTGGAGGATAAAATTCCACTCCGATTGCACTCCCCTGTCCGAACTACAAAGTAAGTTTATTTAGCGATTTTTGAAGGAAACAATGTGAATTTTTTCAAAAGCGGTTCAAAGACGGTGGTAGCAAGGATCAATTGGCCCGAGATTGCGAAATCCGACCAAGCGCCGCCACGAGAGATCTCCTGTGAGCAAAAGAACAAAAGTAGTGAACGGGACGCCAAGGTTCGTCGTGATCGTGATGAAGACTATCATGGTGGAGAGCACCGTCACAACGGCGAATCTCGTGCAAGTTCTCCGACGAACAAACGATATGATAGCCCCAGTAAACCCAAGACTTTTGATTCTACGACCAGCGATTGACACTGACAAGATGTTTGCTGCTTCTCGATTCTGTATTTTATTTTAATTTTTTCACTTTTGAACTTCAATAAGTAATTGGTAAATGACAACGTCGATTGAATAAATGACACTTTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTGGAATCTCTGTGTTTCT</pcr_primer_p1>
		<pcr_primer_p2>CAATCGGAGTGGAATTTTATC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>AAAACTGGAATCTCTGTGTTTCTGTGGGGATCCAAATGAAGTCAATTTTTTTAAAAAAATTCATTAAAAAAAATAACTATTTCTTTTTTCAGGACTGTTCGATGTCAGGAAATGCATTCGATTTGGATAGAGATGAATGATTTCAGCTCAAAGGTCCAGTACATCACTTCGAAAAAGTTTGAGACAAACTGCGGGATTCGATGCTCTGGAGGATAAAATTCCACTCCGATTG</canonical_amplicon>
		<polymorphic_amplicon>AAAACTGGAATCTCTGTGTTTCTGTGGGGATCCAAATGAAGTCAATTTTTTTAAAAAAATTCATTAAAAAAAATAACTATTTCTTTTTTCAGGACTGTTCGATGTCAGGAAATGCATTCGATTTGGATAGAGATGAATGATTTCAGCTCAAAGGTCCAGTACATCACTTCGAAAAAGTKTGAGACAAACTGCGGGATTCGATGCTCTGGAGGATAAAATTCCACTCCGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36444</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>102856</contig_pos>
        <strand></strand>
        <context>CGGGATTCGA[T/A]GCTCTGGAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGGTCCAGTACATCACTTCGAAAAAGTTTGAGACAAACTGCGGGATTCGA</left_flank>
        <right_flank>GCTCTGGAGGATAAAATTCCACTCCGATTGCACTCCCCTGTCCGAACTAC</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTCATTCGCATTCCTATGACTGGTATCTGATTTTCACCGGTCTTTTGTTATTGATTTTCGGAAAAAGTTCATTTGCTTGTTTCTTATTTATTTCTATATGGATTTTCGAAAAAGAGGTGAGATTTCTGGTTTTTACTATGAGAAAATTTTCAACAAAAAGAGGAGAAAGTGTTTGATGACCATGAAATCTAGACTTGTAAGAAAATGGCTGTCCGGACCCGGTCATCCACATTTATCAGGTTTATGTAAGACCATTTATGGACTACCAACTTAAACATTTCACAATAAATATTAAAAAAACTGGAATCTCTGTGTTTCTGTGGGGATCCAAATGAAGTCAATTTTTTTAAAAAAATTCATTAAAAAAAATAACTATTTCTTTTTTCAGGACTGTTCGATGTCAGGAAATGCATTCGATTTGGATAGAGATGAATGATTTCAGCTCAAAGGTCCAGTACATCACTTCGAAAAAGTTTGAGACAAACTGCGGGATTCGATGCTCTGGAGGATAAAATTCCACTCCGATTGCACTCCCCTGTCCGAACTACAAAGTAAGTTTATTTAGCGATTTTTGAAGGAAACAATGTGAATTTTTTCAAAAGCGGTTCAAAGACGGTGGTAGCAAGGATCAATTGGCCCGAGATTGCGAAATCCGACCAAGCGCCGCCACGAGAGATCTCCTGTGAGCAAAAGAACAAAAGTAGTGAACGGGACGCCAAGGTTCGTCGTGATCGTGATGAAGACTATCATGGTGGAGAGCACCGTCACAACGGCGAATCTCGTGCAAGTTCTCCGACGAACAAACGATATGATAGCCCCAGTAAACCCAAGACTTTTGATTCTACGACCAGCGATTGACACTGACAAGATGTTTGCTGCTTCTCGATTCTGTATTTTATTTTAATTTTTTCACTTTTGAACTTCAATAAGTAATTGGTAAATGACAACGTCGATTGAATAAATGACACTTTTTAAGGTAATTTTCCAAGAGAATAGTG</canonical>
            <polymorphic>TCCTCATTCGCATTCCTATGACTGGTATCTGATTTTCACCGGTCTTTTGTTATTGATTTTCGGAAAAAGTTCATTTGCTTGTTTCTTATTTATTTCTATATGGATTTTCGAAAAAGAGGTGAGATTTCTGGTTTTTACTATGAGAAAATTTTCAACAAAAAGAGGAGAAAGTGTTTGATGACCATGAAATCTAGACTTGTAAGAAAATGGCTGTCCGGACCCGGTCATCCACATTTATCAGGTTTATGTAAGACCATTTATGGACTACCAACTTAAACATTTCACAATAAATATTAAAAAAACTGGAATCTCTGTGTTTCTGTGGGGATCCAAATGAAGTCAATTTTTTTAAAAAAATTCATTAAAAAAAATAACTATTTCTTTTTTCAGGACTGTTCGATGTCAGGAAATGCATTCGATTTGGATAGAGATGAATGATTTCAGCTCAAAGGTCCAGTACATCACTTCGAAAAAGTTTGAGACAAACTGCGGGATTCGAWGCTCTGGAGGATAAAATTCCACTCCGATTGCACTCCCCTGTCCGAACTACAAAGTAAGTTTATTTAGCGATTTTTGAAGGAAACAATGTGAATTTTTTCAAAAGCGGTTCAAAGACGGTGGTAGCAAGGATCAATTGGCCCGAGATTGCGAAATCCGACCAAGCGCCGCCACGAGAGATCTCCTGTGAGCAAAAGAACAAAAGTAGTGAACGGGACGCCAAGGTTCGTCGTGATCGTGATGAAGACTATCATGGTGGAGAGCACCGTCACAACGGCGAATCTCGTGCAAGTTCTCCGACGAACAAACGATATGATAGCCCCAGTAAACCCAAGACTTTTGATTCTACGACCAGCGATTGACACTGACAAGATGTTTGCTGCTTCTCGATTCTGTATTTTATTTTAATTTTTTCACTTTTGAACTTCAATAAGTAATTGGTAAATGACAACGTCGATTGAATAAATGACACTTTTTAAGGTAATTTTCCAAGAGAATAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAAAGGTCCAGTACATCAC</pcr_primer_p1>
		<pcr_primer_p2>GTTCTTTTGCTCACAGGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CTCAAAGGTCCAGTACATCACTTCGAAAAAGTTTGAGACAAACTGCGGGATTCGATGCTCTGGAGGATAAAATTCCACTCCGATTGCACTCCCCTGTCCGAACTACAAAGTAAGTTTATTTAGCGATTTTTGAAGGAAACAATGTGAATTTTTTCAAAAGCGGTTCAAAGACGGTGGTAGCAAGGATCAATTGGCCCGAGATTGCGAAATCCGACCAAGCGCCGCCACGAGAGATCTCCTGTGAGCAAAAGAAC</canonical_amplicon>
		<polymorphic_amplicon>CTCAAAGGTCCAGTACATCACTTCGAAAAAGTTTGAGACAAACTGCGGGATTCGAWGCTCTGGAGGATAAAATTCCACTCCGATTGCACTCCCCTGTCCGAACTACAAAGTAAGTTTATTTAGCGATTTTTGAAGGAAACAATGTGAATTTTTTCAAAAGCGGTTCAAAGACGGTGGTAGCAAGGATCAATTGGCCCGAGATTGCGAAATCCGACCAAGCGCCGCCACGAGAGATCTCCTGTGAGCAAAAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36445</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>102900</contig_pos>
        <strand></strand>
        <context>TCCCCTGTCC[G/A]AACTACAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTCGATGCTCTGGAGGATAAAATTCCACTCCGATTGCACTCCCCTGTCC</left_flank>
        <right_flank>AACTACAAAGTAAGTTTATTTAGCGATTTTTGAAGGAAACAATGTGAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGTTATTGATTTTCGGAAAAAGTTCATTTGCTTGTTTCTTATTTATTTCTATATGGATTTTCGAAAAAGAGGTGAGATTTCTGGTTTTTACTATGAGAAAATTTTCAACAAAAAGAGGAGAAAGTGTTTGATGACCATGAAATCTAGACTTGTAAGAAAATGGCTGTCCGGACCCGGTCATCCACATTTATCAGGTTTATGTAAGACCATTTATGGACTACCAACTTAAACATTTCACAATAAATATTAAAAAAACTGGAATCTCTGTGTTTCTGTGGGGATCCAAATGAAGTCAATTTTTTTAAAAAAATTCATTAAAAAAAATAACTATTTCTTTTTTCAGGACTGTTCGATGTCAGGAAATGCATTCGATTTGGATAGAGATGAATGATTTCAGCTCAAAGGTCCAGTACATCACTTCGAAAAAGTTTGAGACAAACTGCGGGATTCGATGCTCTGGAGGATAAAATTCCACTCCGATTGCACTCCCCTGTCCGAACTACAAAGTAAGTTTATTTAGCGATTTTTGAAGGAAACAATGTGAATTTTTTCAAAAGCGGTTCAAAGACGGTGGTAGCAAGGATCAATTGGCCCGAGATTGCGAAATCCGACCAAGCGCCGCCACGAGAGATCTCCTGTGAGCAAAAGAACAAAAGTAGTGAACGGGACGCCAAGGTTCGTCGTGATCGTGATGAAGACTATCATGGTGGAGAGCACCGTCACAACGGCGAATCTCGTGCAAGTTCTCCGACGAACAAACGATATGATAGCCCCAGTAAACCCAAGACTTTTGATTCTACGACCAGCGATTGACACTGACAAGATGTTTGCTGCTTCTCGATTCTGTATTTTATTTTAATTTTTTCACTTTTGAACTTCAATAAGTAATTGGTAAATGACAACGTCGATTGAATAAATGACACTTTTTAAGGTAATTTTCCAAGAGAATAGTGAAACGATGAATGCAATTTTCCAGTTCGCAAACTCAGTTGACAAT</canonical>
            <polymorphic>TTTTGTTATTGATTTTCGGAAAAAGTTCATTTGCTTGTTTCTTATTTATTTCTATATGGATTTTCGAAAAAGAGGTGAGATTTCTGGTTTTTACTATGAGAAAATTTTCAACAAAAAGAGGAGAAAGTGTTTGATGACCATGAAATCTAGACTTGTAAGAAAATGGCTGTCCGGACCCGGTCATCCACATTTATCAGGTTTATGTAAGACCATTTATGGACTACCAACTTAAACATTTCACAATAAATATTAAAAAAACTGGAATCTCTGTGTTTCTGTGGGGATCCAAATGAAGTCAATTTTTTTAAAAAAATTCATTAAAAAAAATAACTATTTCTTTTTTCAGGACTGTTCGATGTCAGGAAATGCATTCGATTTGGATAGAGATGAATGATTTCAGCTCAAAGGTCCAGTACATCACTTCGAAAAAGTTTGAGACAAACTGCGGGATTCGATGCTCTGGAGGATAAAATTCCACTCCGATTGCACTCCCCTGTCCRAACTACAAAGTAAGTTTATTTAGCGATTTTTGAAGGAAACAATGTGAATTTTTTCAAAAGCGGTTCAAAGACGGTGGTAGCAAGGATCAATTGGCCCGAGATTGCGAAATCCGACCAAGCGCCGCCACGAGAGATCTCCTGTGAGCAAAAGAACAAAAGTAGTGAACGGGACGCCAAGGTTCGTCGTGATCGTGATGAAGACTATCATGGTGGAGAGCACCGTCACAACGGCGAATCTCGTGCAAGTTCTCCGACGAACAAACGATATGATAGCCCCAGTAAACCCAAGACTTTTGATTCTACGACCAGCGATTGACACTGACAAGATGTTTGCTGCTTCTCGATTCTGTATTTTATTTTAATTTTTTCACTTTTGAACTTCAATAAGTAATTGGTAAATGACAACGTCGATTGAATAAATGACACTTTTTAAGGTAATTTTCCAAGAGAATAGTGAAACGATGAATGCAATTTTCCAGTTCGCAAACTCAGTTGACAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>463 248 140 113 18 18</canonical_bands>
                <polymorphic_bands>463 248 140 131 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAAAGGTCCAGTACATCAC</pcr_primer_p1>
		<pcr_primer_p2>GTTCTTTTGCTCACAGGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CTCAAAGGTCCAGTACATCACTTCGAAAAAGTTTGAGACAAACTGCGGGATTCGATGCTCTGGAGGATAAAATTCCACTCCGATTGCACTCCCCTGTCCGAACTACAAAGTAAGTTTATTTAGCGATTTTTGAAGGAAACAATGTGAATTTTTTCAAAAGCGGTTCAAAGACGGTGGTAGCAAGGATCAATTGGCCCGAGATTGCGAAATCCGACCAAGCGCCGCCACGAGAGATCTCCTGTGAGCAAAAGAAC</canonical_amplicon>
		<polymorphic_amplicon>CTCAAAGGTCCAGTACATCACTTCGAAAAAGTTTGAGACAAACTGCGGGATTCGATGCTCTGGAGGATAAAATTCCACTCCGATTGCACTCCCCTGTCCRAACTACAAAGTAAGTTTATTTAGCGATTTTTGAAGGAAACAATGTGAATTTTTTCAAAAGCGGTTCAAAGACGGTGGTAGCAAGGATCAATTGGCCCGAGATTGCGAAATCCGACCAAGCGCCGCCACGAGAGATCTCCTGTGAGCAAAAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36446</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>102946</contig_pos>
        <strand></strand>
        <context>GAAACAATGT[G/T]AATTTTTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTCCGAACTACAAAGTAAGTTTATTTAGCGATTTTTGAAGGAAACAATGT</left_flank>
        <right_flank>AATTTTTTCAAAAGCGGTTCAAAGACGGTGGTAGCAAGGATCAATTGGCC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTCTATATGGATTTTCGAAAAAGAGGTGAGATTTCTGGTTTTTACTATGAGAAAATTTTCAACAAAAAGAGGAGAAAGTGTTTGATGACCATGAAATCTAGACTTGTAAGAAAATGGCTGTCCGGACCCGGTCATCCACATTTATCAGGTTTATGTAAGACCATTTATGGACTACCAACTTAAACATTTCACAATAAATATTAAAAAAACTGGAATCTCTGTGTTTCTGTGGGGATCCAAATGAAGTCAATTTTTTTAAAAAAATTCATTAAAAAAAATAACTATTTCTTTTTTCAGGACTGTTCGATGTCAGGAAATGCATTCGATTTGGATAGAGATGAATGATTTCAGCTCAAAGGTCCAGTACATCACTTCGAAAAAGTTTGAGACAAACTGCGGGATTCGATGCTCTGGAGGATAAAATTCCACTCCGATTGCACTCCCCTGTCCGAACTACAAAGTAAGTTTATTTAGCGATTTTTGAAGGAAACAATGTGAATTTTTTCAAAAGCGGTTCAAAGACGGTGGTAGCAAGGATCAATTGGCCCGAGATTGCGAAATCCGACCAAGCGCCGCCACGAGAGATCTCCTGTGAGCAAAAGAACAAAAGTAGTGAACGGGACGCCAAGGTTCGTCGTGATCGTGATGAAGACTATCATGGTGGAGAGCACCGTCACAACGGCGAATCTCGTGCAAGTTCTCCGACGAACAAACGATATGATAGCCCCAGTAAACCCAAGACTTTTGATTCTACGACCAGCGATTGACACTGACAAGATGTTTGCTGCTTCTCGATTCTGTATTTTATTTTAATTTTTTCACTTTTGAACTTCAATAAGTAATTGGTAAATGACAACGTCGATTGAATAAATGACACTTTTTAAGGTAATTTTCCAAGAGAATAGTGAAACGATGAATGCAATTTTCCAGTTCGCAAACTCAGTTGACAATGGTTGCCAATTGTGAGGGCAATTTATCTCTTTGTTAACGATTATTG</canonical>
            <polymorphic>TATTTCTATATGGATTTTCGAAAAAGAGGTGAGATTTCTGGTTTTTACTATGAGAAAATTTTCAACAAAAAGAGGAGAAAGTGTTTGATGACCATGAAATCTAGACTTGTAAGAAAATGGCTGTCCGGACCCGGTCATCCACATTTATCAGGTTTATGTAAGACCATTTATGGACTACCAACTTAAACATTTCACAATAAATATTAAAAAAACTGGAATCTCTGTGTTTCTGTGGGGATCCAAATGAAGTCAATTTTTTTAAAAAAATTCATTAAAAAAAATAACTATTTCTTTTTTCAGGACTGTTCGATGTCAGGAAATGCATTCGATTTGGATAGAGATGAATGATTTCAGCTCAAAGGTCCAGTACATCACTTCGAAAAAGTTTGAGACAAACTGCGGGATTCGATGCTCTGGAGGATAAAATTCCACTCCGATTGCACTCCCCTGTCCGAACTACAAAGTAAGTTTATTTAGCGATTTTTGAAGGAAACAATGTKAATTTTTTCAAAAGCGGTTCAAAGACGGTGGTAGCAAGGATCAATTGGCCCGAGATTGCGAAATCCGACCAAGCGCCGCCACGAGAGATCTCCTGTGAGCAAAAGAACAAAAGTAGTGAACGGGACGCCAAGGTTCGTCGTGATCGTGATGAAGACTATCATGGTGGAGAGCACCGTCACAACGGCGAATCTCGTGCAAGTTCTCCGACGAACAAACGATATGATAGCCCCAGTAAACCCAAGACTTTTGATTCTACGACCAGCGATTGACACTGACAAGATGTTTGCTGCTTCTCGATTCTGTATTTTATTTTAATTTTTTCACTTTTGAACTTCAATAAGTAATTGGTAAATGACAACGTCGATTGAATAAATGACACTTTTTAAGGTAATTTTCCAAGAGAATAGTGAAACGATGAATGCAATTTTCCAGTTCGCAAACTCAGTTGACAATGGTTGCCAATTGTGAGGGCAATTTATCTCTTTGTTAACGATTATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>500 209 159 76 56</canonical_bands>
                <polymorphic_bands>576 209 159 56</polymorphic_bands>
            </assay>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>496 289 157 58</canonical_bands>
                <polymorphic_bands>653 289 58</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>140 76 58 58 58 57 55 53 52 52 51 32 32 31 31 30 24 21 18 17 16 11 8 7 6 6</canonical_bands>
                <polymorphic_bands>140 88 76 58 58 57 55 53 52 52 51 32 32 31 31 24 21 18 17 16 11 8 7 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTGGAGGATAAAATTCCAC</pcr_primer_p1>
		<pcr_primer_p2>TGATAGTCTTCATCACGATCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTGGAGGATAAAATTCCACTCCGATTGCACTCCCCTGTCCGAACTACAAAGTAAGTTTATTTAGCGATTTTTGAAGGAAACAATGTGAATTTTTTCAAAAGCGGTTCAAAGACGGTGGTAGCAAGGATCAATTGGCCCGAGATTGCGAAATCCGACCAAGCGCCGCCACGAGAGATCTCCTGTGAGCAAAAGAACAAAAGTAGTGAACGGGACGCCAAGGTTCGTCGTGATCGTGATGAAGACTATCA</canonical_amplicon>
		<polymorphic_amplicon>CTCTGGAGGATAAAATTCCACTCCGATTGCACTCCCCTGTCCGAACTACAAAGTAAGTTTATTTAGCGATTTTTGAAGGAAACAATGTKAATTTTTTCAAAAGCGGTTCAAAGACGGTGGTAGCAAGGATCAATTGGCCCGAGATTGCGAAATCCGACCAAGCGCCGCCACGAGAGATCTCCTGTGAGCAAAAGAACAAAAGTAGTGAACGGGACGCCAAGGTTCGTCGTGATCGTGATGAAGACTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36447</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>103080</contig_pos>
        <strand></strand>
        <context>GACGCCAAGG[T/A]TCGTCGTGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGAGATCTCCTGTGAGCAAAAGAACAAAAGTAGTGAACGGGACGCCAAGG</left_flank>
        <right_flank>TCGTCGTGATCGTGATGAAGACTATCATGGTGGAGAGCACCGTCACAACG</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATCCACATTTATCAGGTTTATGTAAGACCATTTATGGACTACCAACTTAAACATTTCACAATAAATATTAAAAAAACTGGAATCTCTGTGTTTCTGTGGGGATCCAAATGAAGTCAATTTTTTTAAAAAAATTCATTAAAAAAAATAACTATTTCTTTTTTCAGGACTGTTCGATGTCAGGAAATGCATTCGATTTGGATAGAGATGAATGATTTCAGCTCAAAGGTCCAGTACATCACTTCGAAAAAGTTTGAGACAAACTGCGGGATTCGATGCTCTGGAGGATAAAATTCCACTCCGATTGCACTCCCCTGTCCGAACTACAAAGTAAGTTTATTTAGCGATTTTTGAAGGAAACAATGTGAATTTTTTCAAAAGCGGTTCAAAGACGGTGGTAGCAAGGATCAATTGGCCCGAGATTGCGAAATCCGACCAAGCGCCGCCACGAGAGATCTCCTGTGAGCAAAAGAACAAAAGTAGTGAACGGGACGCCAAGGTTCGTCGTGATCGTGATGAAGACTATCATGGTGGAGAGCACCGTCACAACGGCGAATCTCGTGCAAGTTCTCCGACGAACAAACGATATGATAGCCCCAGTAAACCCAAGACTTTTGATTCTACGACCAGCGATTGACACTGACAAGATGTTTGCTGCTTCTCGATTCTGTATTTTATTTTAATTTTTTCACTTTTGAACTTCAATAAGTAATTGGTAAATGACAACGTCGATTGAATAAATGACACTTTTTAAGGTAATTTTCCAAGAGAATAGTGAAACGATGAATGCAATTTTCCAGTTCGCAAACTCAGTTGACAATGGTTGCCAATTGTGAGGGCAATTTATCTCTTTGTTAACGATTATTGCATCTAGTTTGGCATCTTGGATGTTAGAGATGGATTAGGGCTCTCAACACTTTCCCATAGAACTTTTTTTTCCAACAGTAGGACCATTCCCAATCCAAAGGTTTTGAGTCAGGGAAAAGGAAACACTGTAAGTT</canonical>
            <polymorphic>TCATCCACATTTATCAGGTTTATGTAAGACCATTTATGGACTACCAACTTAAACATTTCACAATAAATATTAAAAAAACTGGAATCTCTGTGTTTCTGTGGGGATCCAAATGAAGTCAATTTTTTTAAAAAAATTCATTAAAAAAAATAACTATTTCTTTTTTCAGGACTGTTCGATGTCAGGAAATGCATTCGATTTGGATAGAGATGAATGATTTCAGCTCAAAGGTCCAGTACATCACTTCGAAAAAGTTTGAGACAAACTGCGGGATTCGATGCTCTGGAGGATAAAATTCCACTCCGATTGCACTCCCCTGTCCGAACTACAAAGTAAGTTTATTTAGCGATTTTTGAAGGAAACAATGTGAATTTTTTCAAAAGCGGTTCAAAGACGGTGGTAGCAAGGATCAATTGGCCCGAGATTGCGAAATCCGACCAAGCGCCGCCACGAGAGATCTCCTGTGAGCAAAAGAACAAAAGTAGTGAACGGGACGCCAAGGWTCGTCGTGATCGTGATGAAGACTATCATGGTGGAGAGCACCGTCACAACGGCGAATCTCGTGCAAGTTCTCCGACGAACAAACGATATGATAGCCCCAGTAAACCCAAGACTTTTGATTCTACGACCAGCGATTGACACTGACAAGATGTTTGCTGCTTCTCGATTCTGTATTTTATTTTAATTTTTTCACTTTTGAACTTCAATAAGTAATTGGTAAATGACAACGTCGATTGAATAAATGACACTTTTTAAGGTAATTTTCCAAGAGAATAGTGAAACGATGAATGCAATTTTCCAGTTCGCAAACTCAGTTGACAATGGTTGCCAATTGTGAGGGCAATTTATCTCTTTGTTAACGATTATTGCATCTAGTTTGGCATCTTGGATGTTAGAGATGGATTAGGGCTCTCAACACTTTCCCATAGAACTTTTTTTTCCAACAGTAGGACCATTCCCAATCCAAAGGTTTTGAGTCAGGGAAAAGGAAACACTGTAAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGATCTCCTGTGAGCAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTAAAATAAAATACAGAATCGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>GAGATCTCCTGTGAGCAAAAGAACAAAAGTAGTGAACGGGACGCCAAGGTTCGTCGTGATCGTGATGAAGACTATCATGGTGGAGAGCACCGTCACAACGGCGAATCTCGTGCAAGTTCTCCGACGAACAAACGATATGATAGCCCCAGTAAACCCAAGACTTTTGATTCTACGACCAGCGATTGACACTGACAAGATGTTTGCTGCTTCTCGATTCTGTATTTTATTTTAA</canonical_amplicon>
		<polymorphic_amplicon>GAGATCTCCTGTGAGCAAAAGAACAAAAGTAGTGAACGGGACGCCAAGGWTCGTCGTGATCGTGATGAAGACTATCATGGTGGAGAGCACCGTCACAACGGCGAATCTCGTGCAAGTTCTCCGACGAACAAACGATATGATAGCCCCAGTAAACCCAAGACTTTTGATTCTACGACCAGCGATTGACACTGACAAGATGTTTGCTGCTTCTCGATTCTGTATTTTATTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36448</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>103157</contig_pos>
        <strand></strand>
        <context>TTCTCCGACG[A/T]ACAAACGATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGGTGGAGAGCACCGTCACAACGGCGAATCTCGTGCAAGTTCTCCGACG</left_flank>
        <right_flank>ACAAACGATATGATAGCCCCAGTAAACCCAAGACTTTTGATTCTACGACC</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGGAATCTCTGTGTTTCTGTGGGGATCCAAATGAAGTCAATTTTTTTAAAAAAATTCATTAAAAAAAATAACTATTTCTTTTTTCAGGACTGTTCGATGTCAGGAAATGCATTCGATTTGGATAGAGATGAATGATTTCAGCTCAAAGGTCCAGTACATCACTTCGAAAAAGTTTGAGACAAACTGCGGGATTCGATGCTCTGGAGGATAAAATTCCACTCCGATTGCACTCCCCTGTCCGAACTACAAAGTAAGTTTATTTAGCGATTTTTGAAGGAAACAATGTGAATTTTTTCAAAAGCGGTTCAAAGACGGTGGTAGCAAGGATCAATTGGCCCGAGATTGCGAAATCCGACCAAGCGCCGCCACGAGAGATCTCCTGTGAGCAAAAGAACAAAAGTAGTGAACGGGACGCCAAGGTTCGTCGTGATCGTGATGAAGACTATCATGGTGGAGAGCACCGTCACAACGGCGAATCTCGTGCAAGTTCTCCGACGAACAAACGATATGATAGCCCCAGTAAACCCAAGACTTTTGATTCTACGACCAGCGATTGACACTGACAAGATGTTTGCTGCTTCTCGATTCTGTATTTTATTTTAATTTTTTCACTTTTGAACTTCAATAAGTAATTGGTAAATGACAACGTCGATTGAATAAATGACACTTTTTAAGGTAATTTTCCAAGAGAATAGTGAAACGATGAATGCAATTTTCCAGTTCGCAAACTCAGTTGACAATGGTTGCCAATTGTGAGGGCAATTTATCTCTTTGTTAACGATTATTGCATCTAGTTTGGCATCTTGGATGTTAGAGATGGATTAGGGCTCTCAACACTTTCCCATAGAACTTTTTTTTCCAACAGTAGGACCATTCCCAATCCAAAGGTTTTGAGTCAGGGAAAAGGAAACACTGTAAGTTTGCAAAATTTTCATGTTCCTGAGATGATAATCCGTGTTTTTAAACCTATGCATGCAGAAAACATGACACGGCCAGCT</canonical>
            <polymorphic>ACTGGAATCTCTGTGTTTCTGTGGGGATCCAAATGAAGTCAATTTTTTTAAAAAAATTCATTAAAAAAAATAACTATTTCTTTTTTCAGGACTGTTCGATGTCAGGAAATGCATTCGATTTGGATAGAGATGAATGATTTCAGCTCAAAGGTCCAGTACATCACTTCGAAAAAGTTTGAGACAAACTGCGGGATTCGATGCTCTGGAGGATAAAATTCCACTCCGATTGCACTCCCCTGTCCGAACTACAAAGTAAGTTTATTTAGCGATTTTTGAAGGAAACAATGTGAATTTTTTCAAAAGCGGTTCAAAGACGGTGGTAGCAAGGATCAATTGGCCCGAGATTGCGAAATCCGACCAAGCGCCGCCACGAGAGATCTCCTGTGAGCAAAAGAACAAAAGTAGTGAACGGGACGCCAAGGTTCGTCGTGATCGTGATGAAGACTATCATGGTGGAGAGCACCGTCACAACGGCGAATCTCGTGCAAGTTCTCCGACGWACAAACGATATGATAGCCCCAGTAAACCCAAGACTTTTGATTCTACGACCAGCGATTGACACTGACAAGATGTTTGCTGCTTCTCGATTCTGTATTTTATTTTAATTTTTTCACTTTTGAACTTCAATAAGTAATTGGTAAATGACAACGTCGATTGAATAAATGACACTTTTTAAGGTAATTTTCCAAGAGAATAGTGAAACGATGAATGCAATTTTCCAGTTCGCAAACTCAGTTGACAATGGTTGCCAATTGTGAGGGCAATTTATCTCTTTGTTAACGATTATTGCATCTAGTTTGGCATCTTGGATGTTAGAGATGGATTAGGGCTCTCAACACTTTCCCATAGAACTTTTTTTTCCAACAGTAGGACCATTCCCAATCCAAAGGTTTTGAGTCAGGGAAAAGGAAACACTGTAAGTTTGCAAAATTTTCATGTTCCTGAGATGATAATCCGTGTTTTTAAACCTATGCATGCAGAAAACATGACACGGCCAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGACTATCATGGTGGAGAGC</pcr_primer_p1>
		<pcr_primer_p2>TTGGAAAATTACCTTAAAAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGACTATCATGGTGGAGAGCACCGTCACAACGGCGAATCTCGTGCAAGTTCTCCGACGAACAAACGATATGATAGCCCCAGTAAACCCAAGACTTTTGATTCTACGACCAGCGATTGACACTGACAAGATGTTTGCTGCTTCTCGATTCTGTATTTTATTTTAATTTTTTCACTTTTGAACTTCAATAAGTAATTGGTAAATGACAACGTCGATTGAATAAATGACACTTTTTAAGGTAATTTTCCAA</canonical_amplicon>
		<polymorphic_amplicon>AAGACTATCATGGTGGAGAGCACCGTCACAACGGCGAATCTCGTGCAAGTTCTCCGACGWACAAACGATATGATAGCCCCAGTAAACCCAAGACTTTTGATTCTACGACCAGCGATTGACACTGACAAGATGTTTGCTGCTTCTCGATTCTGTATTTTATTTTAATTTTTTCACTTTTGAACTTCAATAAGTAATTGGTAAATGACAACGTCGATTGAATAAATGACACTTTTTAAGGTAATTTTCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36449</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>103288</contig_pos>
        <strand></strand>
        <context>ACTTCAATAA[G/A]TAATTGGTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTCTCGATTCTGTATTTTATTTTAATTTTTTCACTTTTGAACTTCAATAA</left_flank>
        <right_flank>TAATTGGTAAATGACAACGTCGATTGAATAAATGACACTTTTTAAGGTAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATGATTTCAGCTCAAAGGTCCAGTACATCACTTCGAAAAAGTTTGAGACAAACTGCGGGATTCGATGCTCTGGAGGATAAAATTCCACTCCGATTGCACTCCCCTGTCCGAACTACAAAGTAAGTTTATTTAGCGATTTTTGAAGGAAACAATGTGAATTTTTTCAAAAGCGGTTCAAAGACGGTGGTAGCAAGGATCAATTGGCCCGAGATTGCGAAATCCGACCAAGCGCCGCCACGAGAGATCTCCTGTGAGCAAAAGAACAAAAGTAGTGAACGGGACGCCAAGGTTCGTCGTGATCGTGATGAAGACTATCATGGTGGAGAGCACCGTCACAACGGCGAATCTCGTGCAAGTTCTCCGACGAACAAACGATATGATAGCCCCAGTAAACCCAAGACTTTTGATTCTACGACCAGCGATTGACACTGACAAGATGTTTGCTGCTTCTCGATTCTGTATTTTATTTTAATTTTTTCACTTTTGAACTTCAATAAGTAATTGGTAAATGACAACGTCGATTGAATAAATGACACTTTTTAAGGTAATTTTCCAAGAGAATAGTGAAACGATGAATGCAATTTTCCAGTTCGCAAACTCAGTTGACAATGGTTGCCAATTGTGAGGGCAATTTATCTCTTTGTTAACGATTATTGCATCTAGTTTGGCATCTTGGATGTTAGAGATGGATTAGGGCTCTCAACACTTTCCCATAGAACTTTTTTTTCCAACAGTAGGACCATTCCCAATCCAAAGGTTTTGAGTCAGGGAAAAGGAAACACTGTAAGTTTGCAAAATTTTCATGTTCCTGAGATGATAATCCGTGTTTTTAAACCTATGCATGCAGAAAACATGACACGGCCAGCTAGCTCATATCGTGAGTCTCATGAAGATCACAGCTACCAACAAGGAAGAAGTGTAAGAAGGAAGCAGATTCCGCCACCTTCTTCCTTTAAATCGAGTAGGTACCACGTACCCCCATTTTCGATATTTTGTAA</canonical>
            <polymorphic>GAATGATTTCAGCTCAAAGGTCCAGTACATCACTTCGAAAAAGTTTGAGACAAACTGCGGGATTCGATGCTCTGGAGGATAAAATTCCACTCCGATTGCACTCCCCTGTCCGAACTACAAAGTAAGTTTATTTAGCGATTTTTGAAGGAAACAATGTGAATTTTTTCAAAAGCGGTTCAAAGACGGTGGTAGCAAGGATCAATTGGCCCGAGATTGCGAAATCCGACCAAGCGCCGCCACGAGAGATCTCCTGTGAGCAAAAGAACAAAAGTAGTGAACGGGACGCCAAGGTTCGTCGTGATCGTGATGAAGACTATCATGGTGGAGAGCACCGTCACAACGGCGAATCTCGTGCAAGTTCTCCGACGAACAAACGATATGATAGCCCCAGTAAACCCAAGACTTTTGATTCTACGACCAGCGATTGACACTGACAAGATGTTTGCTGCTTCTCGATTCTGTATTTTATTTTAATTTTTTCACTTTTGAACTTCAATAARTAATTGGTAAATGACAACGTCGATTGAATAAATGACACTTTTTAAGGTAATTTTCCAAGAGAATAGTGAAACGATGAATGCAATTTTCCAGTTCGCAAACTCAGTTGACAATGGTTGCCAATTGTGAGGGCAATTTATCTCTTTGTTAACGATTATTGCATCTAGTTTGGCATCTTGGATGTTAGAGATGGATTAGGGCTCTCAACACTTTCCCATAGAACTTTTTTTTCCAACAGTAGGACCATTCCCAATCCAAAGGTTTTGAGTCAGGGAAAAGGAAACACTGTAAGTTTGCAAAATTTTCATGTTCCTGAGATGATAATCCGTGTTTTTAAACCTATGCATGCAGAAAACATGACACGGCCAGCTAGCTCATATCGTGAGTCTCATGAAGATCACAGCTACCAACAAGGAAGAAGTGTAAGAAGGAAGCAGATTCCGCCACCTTCTTCCTTTAAATCGAGTAGGTACCACGTACCCCCATTTTCGATATTTTGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGACACTGACAAGATGTTTG</pcr_primer_p1>
		<pcr_primer_p2>ATGCCAAACTAGATGCAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTGACACTGACAAGATGTTTGCTGCTTCTCGATTCTGTATTTTATTTTAATTTTTTCACTTTTGAACTTCAATAAGTAATTGGTAAATGACAACGTCGATTGAATAAATGACACTTTTTAAGGTAATTTTCCAAGAGAATAGTGAAACGATGAATGCAATTTTCCAGTTCGCAAACTCAGTTGACAATGGTTGCCAATTGTGAGGGCAATTTATCTCTTTGTTAACGATTATTGCATCTAGTTTGGCAT</canonical_amplicon>
		<polymorphic_amplicon>ATTGACACTGACAAGATGTTTGCTGCTTCTCGATTCTGTATTTTATTTTAATTTTTTCACTTTTGAACTTCAATAARTAATTGGTAAATGACAACGTCGATTGAATAAATGACACTTTTTAAGGTAATTTTCCAAGAGAATAGTGAAACGATGAATGCAATTTTCCAGTTCGCAAACTCAGTTGACAATGGTTGCCAATTGTGAGGGCAATTTATCTCTTTGTTAACGATTATTGCATCTAGTTTGGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36450</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>121665</contig_pos>
        <strand></strand>
        <context>aaaattactg[T/A]aagagatatc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CTATATGCCAACCTATACTTGCACTTTAAGCTCAATTATCAAAATTACTG</left_flank>
        <right_flank>AAGAGATATCAAAAATTTGTCAACTGATAAATTGTTTATCATAATATCAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAATCTCAAAATACTGGCCGTCAACTTTGACCCAATTTTTCTTGGTTCCTGTCAGAGGTATCAAAAAGTTGTCCACGGAAATGATGCTTATCATAAAATCAAAAACAGTTCACCACTGCTGAAATATCTTACAGGAAATGAGATAAATAGAGTTGAAGTTGGCATTTTAGGGTCATACAGGTTTTGCGGTAACAATCAAACTTCTTGTTAGAATTCAACGTTTTTCTTTGAGCTGATACCAGTTATCTGATCTTTTTTGAATATTCGATAGATCAAATGAAATTACTCGATGAATCGATCGGGCCGAAATTTAAAAATCAGATTTATTTGTTGCATACTGAACAAACTATGAAAGTTAAACGAATTATGGAAGTTTTGAAAAAAAAAATTTTCTGAAGCTTTCTAATTACACATCGAAAGTTTAAAGGAAAATGCTGAAAATTGAACTATATGCCAACCTATACTTGCACTTTAAGCTCAATTATCAAAATTACTGTAAGAGATATCAAAAATTTGTCAACTGATAAATTGTTTATCATAATATCATGAACGCTTTTTTAGTTTACAGATTTTTGAAATCGCTTACAGAAATTGAGATAACTGCGCTCAAATTGTAAGAATATGGCTTCCTATTAGAGCATTTGTGGTTTAGCATATATGTTAATTGTTTGAAACAGAAAGTTGCAAGAATTGTGAAAGTTTTCGGTTCTTGTTTAATCATAATTTCCTAATCGTATATCGTCTATGTTCTTTTCAAATTTATTGTAATTATACTTTAGAGAACTGAAAATCATTAGAGAATCCTTGTTTTTTTTCCAGAAGCGTTGGAAAAAAGTTTGAATATTTTCAAAAATTGAGAGCCAAATGTTGGAGGCGCATGCCTATGACAGAGTACCACATTCTCTCAATCTGAATAAGACATCGAAAATACTTCTGTTCCATCACTTTTAAGTAAGACTAAAGTAGTTTCGAAATGTGTTATGCAGATCAAACCGAA</canonical>
            <polymorphic>AAAAAATCTCAAAATACTGGCCGTCAACTTTGACCCAATTTTTCTTGGTTCCTGTCAGAGGTATCAAAAAGTTGTCCACGGAAATGATGCTTATCATAAAATCAAAAACAGTTCACCACTGCTGAAATATCTTACAGGAAATGAGATAAATAGAGTTGAAGTTGGCATTTTAGGGTCATACAGGTTTTGCGGTAACAATCAAACTTCTTGTTAGAATTCAACGTTTTTCTTTGAGCTGATACCAGTTATCTGATCTTTTTTGAATATTCGATAGATCAAATGAAATTACTCGATGAATCGATCGGGCCGAAATTTAAAAATCAGATTTATTTGTTGCATACTGAACAAACTATGAAAGTTAAACGAATTATGGAAGTTTTGAAAAAAAAAATTTTCTGAAGCTTTCTAATTACACATCGAAAGTTTAAAGGAAAATGCTGAAAATTGAACTATATGCCAACCTATACTTGCACTTTAAGCTCAATTATCAAAATTACTGWAAGAGATATCAAAAATTTGTCAACTGATAAATTGTTTATCATAATATCATGAACGCTTTTTTAGTTTACAGATTTTTGAAATCGCTTACAGAAATTGAGATAACTGCGCTCAAATTGTAAGAATATGGCTTCCTATTAGAGCATTTGTGGTTTAGCATATATGTTAATTGTTTGAAACAGAAAGTTGCAAGAATTGTGAAAGTTTTCGGTTCTTGTTTAATCATAATTTCCTAATCGTATATCGTCTATGTTCTTTTCAAATTTATTGTAATTATACTTTAGAGAACTGAAAATCATTAGAGAATCCTTGTTTTTTTTCCAGAAGCGTTGGAAAAAAGTTTGAATATTTTCAAAAATTGAGAGCCAAATGTTGGAGGCGCATGCCTATGACAGAGTACCACATTCTCTCAATCTGAATAAGACATCGAAAATACTTCTGTTCCATCACTTTTAAGTAAGACTAAAGTAGTTTCGAAATGTGTTATGCAGATCAAACCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>502 388 110</canonical_bands>
                <polymorphic_bands>890 110</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTGAACTATATGCCAACCTA</pcr_primer_p1>
		<pcr_primer_p2>AATTCTTGCAACTTTCTGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AAATTGAACTATATGCCAACCTATACTTGCACTTTAAGCTCAATTATCAAAATTACTGTAAGAGATATCAAAAATTTGTCAACTGATAAATTGTTTATCATAATATCATGAACGCTTTTTTAGTTTACAGATTTTTGAAATCGCTTACAGAAATTGAGATAACTGCGCTCAAATTGTAAGAATATGGCTTCCTATTAGAGCATTTGTGGTTTAGCATATATGTTAATTGTTTGAAACAGAAAGTTGCAAGAATT</canonical_amplicon>
		<polymorphic_amplicon>AAATTGAACTATATGCCAACCTATACTTGCACTTTAAGCTCAATTATCAAAATTACTGWAAGAGATATCAAAAATTTGTCAACTGATAAATTGTTTATCATAATATCATGAACGCTTTTTTAGTTTACAGATTTTTGAAATCGCTTACAGAAATTGAGATAACTGCGCTCAAATTGTAAGAATATGGCTTCCTATTAGAGCATTTGTGGTTTAGCATATATGTTAATTGTTTGAAACAGAAAGTTGCAAGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36451</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>121749</contig_pos>
        <strand></strand>
        <context>ttttgaaatc[G/T]cttacagaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTTATCATAATATCATGAACGCTTTTTTAGTTTACAGATTTTTGAAATC</left_flank>
        <right_flank>CTTACAGAAATTGAGATAACTGCGCTCAAATTGTAAGAATATGGCTTCCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATGCTTATCATAAAATCAAAAACAGTTCACCACTGCTGAAATATCTTACAGGAAATGAGATAAATAGAGTTGAAGTTGGCATTTTAGGGTCATACAGGTTTTGCGGTAACAATCAAACTTCTTGTTAGAATTCAACGTTTTTCTTTGAGCTGATACCAGTTATCTGATCTTTTTTGAATATTCGATAGATCAAATGAAATTACTCGATGAATCGATCGGGCCGAAATTTAAAAATCAGATTTATTTGTTGCATACTGAACAAACTATGAAAGTTAAACGAATTATGGAAGTTTTGAAAAAAAAAATTTTCTGAAGCTTTCTAATTACACATCGAAAGTTTAAAGGAAAATGCTGAAAATTGAACTATATGCCAACCTATACTTGCACTTTAAGCTCAATTATCAAAATTACTGTAAGAGATATCAAAAATTTGTCAACTGATAAATTGTTTATCATAATATCATGAACGCTTTTTTAGTTTACAGATTTTTGAAATCGCTTACAGAAATTGAGATAACTGCGCTCAAATTGTAAGAATATGGCTTCCTATTAGAGCATTTGTGGTTTAGCATATATGTTAATTGTTTGAAACAGAAAGTTGCAAGAATTGTGAAAGTTTTCGGTTCTTGTTTAATCATAATTTCCTAATCGTATATCGTCTATGTTCTTTTCAAATTTATTGTAATTATACTTTAGAGAACTGAAAATCATTAGAGAATCCTTGTTTTTTTTCCAGAAGCGTTGGAAAAAAGTTTGAATATTTTCAAAAATTGAGAGCCAAATGTTGGAGGCGCATGCCTATGACAGAGTACCACATTCTCTCAATCTGAATAAGACATCGAAAATACTTCTGTTCCATCACTTTTAAGTAAGACTAAAGTAGTTTCGAAATGTGTTATGCAGATCAAACCGAAACTAATGTCAAATTAGGAATCCATCTGACTATCCGACTACTCTGCTTGAACTTTGTTTTCTGACCATATAGAAAAATGTTTGTT</canonical>
            <polymorphic>TGATGCTTATCATAAAATCAAAAACAGTTCACCACTGCTGAAATATCTTACAGGAAATGAGATAAATAGAGTTGAAGTTGGCATTTTAGGGTCATACAGGTTTTGCGGTAACAATCAAACTTCTTGTTAGAATTCAACGTTTTTCTTTGAGCTGATACCAGTTATCTGATCTTTTTTGAATATTCGATAGATCAAATGAAATTACTCGATGAATCGATCGGGCCGAAATTTAAAAATCAGATTTATTTGTTGCATACTGAACAAACTATGAAAGTTAAACGAATTATGGAAGTTTTGAAAAAAAAAATTTTCTGAAGCTTTCTAATTACACATCGAAAGTTTAAAGGAAAATGCTGAAAATTGAACTATATGCCAACCTATACTTGCACTTTAAGCTCAATTATCAAAATTACTGTAAGAGATATCAAAAATTTGTCAACTGATAAATTGTTTATCATAATATCATGAACGCTTTTTTAGTTTACAGATTTTTGAAATCKCTTACAGAAATTGAGATAACTGCGCTCAAATTGTAAGAATATGGCTTCCTATTAGAGCATTTGTGGTTTAGCATATATGTTAATTGTTTGAAACAGAAAGTTGCAAGAATTGTGAAAGTTTTCGGTTCTTGTTTAATCATAATTTCCTAATCGTATATCGTCTATGTTCTTTTCAAATTTATTGTAATTATACTTTAGAGAACTGAAAATCATTAGAGAATCCTTGTTTTTTTTCCAGAAGCGTTGGAAAAAAGTTTGAATATTTTCAAAAATTGAGAGCCAAATGTTGGAGGCGCATGCCTATGACAGAGTACCACATTCTCTCAATCTGAATAAGACATCGAAAATACTTCTGTTCCATCACTTTTAAGTAAGACTAAAGTAGTTTCGAAATGTGTTATGCAGATCAAACCGAAACTAATGTCAAATTAGGAATCCATCTGACTATCCGACTACTCTGCTTGAACTTTGTTTTCTGACCATATAGAAAAATGTTTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTGAACTATATGCCAACCTA</pcr_primer_p1>
		<pcr_primer_p2>AATTCTTGCAACTTTCTGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AAATTGAACTATATGCCAACCTATACTTGCACTTTAAGCTCAATTATCAAAATTACTGTAAGAGATATCAAAAATTTGTCAACTGATAAATTGTTTATCATAATATCATGAACGCTTTTTTAGTTTACAGATTTTTGAAATCGCTTACAGAAATTGAGATAACTGCGCTCAAATTGTAAGAATATGGCTTCCTATTAGAGCATTTGTGGTTTAGCATATATGTTAATTGTTTGAAACAGAAAGTTGCAAGAATT</canonical_amplicon>
		<polymorphic_amplicon>AAATTGAACTATATGCCAACCTATACTTGCACTTTAAGCTCAATTATCAAAATTACTGTAAGAGATATCAAAAATTTGTCAACTGATAAATTGTTTATCATAATATCATGAACGCTTTTTTAGTTTACAGATTTTTGAAATCKCTTACAGAAATTGAGATAACTGCGCTCAAATTGTAAGAATATGGCTTCCTATTAGAGCATTTGTGGTTTAGCATATATGTTAATTGTTTGAAACAGAAAGTTGCAAGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36452</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>121772</contig_pos>
        <strand></strand>
        <context>gagataactg[C/G]gctcaaattg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTTTAGTTTACAGATTTTTGAAATCGCTTACAGAAATTGAGATAACTG</left_flank>
        <right_flank>GCTCAAATTGTAAGAATATGGCTTCCTATTAGAGCATTTGTGGTTTAGCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGTTCACCACTGCTGAAATATCTTACAGGAAATGAGATAAATAGAGTTGAAGTTGGCATTTTAGGGTCATACAGGTTTTGCGGTAACAATCAAACTTCTTGTTAGAATTCAACGTTTTTCTTTGAGCTGATACCAGTTATCTGATCTTTTTTGAATATTCGATAGATCAAATGAAATTACTCGATGAATCGATCGGGCCGAAATTTAAAAATCAGATTTATTTGTTGCATACTGAACAAACTATGAAAGTTAAACGAATTATGGAAGTTTTGAAAAAAAAAATTTTCTGAAGCTTTCTAATTACACATCGAAAGTTTAAAGGAAAATGCTGAAAATTGAACTATATGCCAACCTATACTTGCACTTTAAGCTCAATTATCAAAATTACTGTAAGAGATATCAAAAATTTGTCAACTGATAAATTGTTTATCATAATATCATGAACGCTTTTTTAGTTTACAGATTTTTGAAATCGCTTACAGAAATTGAGATAACTGCGCTCAAATTGTAAGAATATGGCTTCCTATTAGAGCATTTGTGGTTTAGCATATATGTTAATTGTTTGAAACAGAAAGTTGCAAGAATTGTGAAAGTTTTCGGTTCTTGTTTAATCATAATTTCCTAATCGTATATCGTCTATGTTCTTTTCAAATTTATTGTAATTATACTTTAGAGAACTGAAAATCATTAGAGAATCCTTGTTTTTTTTCCAGAAGCGTTGGAAAAAAGTTTGAATATTTTCAAAAATTGAGAGCCAAATGTTGGAGGCGCATGCCTATGACAGAGTACCACATTCTCTCAATCTGAATAAGACATCGAAAATACTTCTGTTCCATCACTTTTAAGTAAGACTAAAGTAGTTTCGAAATGTGTTATGCAGATCAAACCGAAACTAATGTCAAATTAGGAATCCATCTGACTATCCGACTACTCTGCTTGAACTTTGTTTTCTGACCATATAGAAAAATGTTTGTTCTTGTACATATACCCTAGTTCCT</canonical>
            <polymorphic>ACAGTTCACCACTGCTGAAATATCTTACAGGAAATGAGATAAATAGAGTTGAAGTTGGCATTTTAGGGTCATACAGGTTTTGCGGTAACAATCAAACTTCTTGTTAGAATTCAACGTTTTTCTTTGAGCTGATACCAGTTATCTGATCTTTTTTGAATATTCGATAGATCAAATGAAATTACTCGATGAATCGATCGGGCCGAAATTTAAAAATCAGATTTATTTGTTGCATACTGAACAAACTATGAAAGTTAAACGAATTATGGAAGTTTTGAAAAAAAAAATTTTCTGAAGCTTTCTAATTACACATCGAAAGTTTAAAGGAAAATGCTGAAAATTGAACTATATGCCAACCTATACTTGCACTTTAAGCTCAATTATCAAAATTACTGTAAGAGATATCAAAAATTTGTCAACTGATAAATTGTTTATCATAATATCATGAACGCTTTTTTAGTTTACAGATTTTTGAAATCGCTTACAGAAATTGAGATAACTGSGCTCAAATTGTAAGAATATGGCTTCCTATTAGAGCATTTGTGGTTTAGCATATATGTTAATTGTTTGAAACAGAAAGTTGCAAGAATTGTGAAAGTTTTCGGTTCTTGTTTAATCATAATTTCCTAATCGTATATCGTCTATGTTCTTTTCAAATTTATTGTAATTATACTTTAGAGAACTGAAAATCATTAGAGAATCCTTGTTTTTTTTCCAGAAGCGTTGGAAAAAAGTTTGAATATTTTCAAAAATTGAGAGCCAAATGTTGGAGGCGCATGCCTATGACAGAGTACCACATTCTCTCAATCTGAATAAGACATCGAAAATACTTCTGTTCCATCACTTTTAAGTAAGACTAAAGTAGTTTCGAAATGTGTTATGCAGATCAAACCGAAACTAATGTCAAATTAGGAATCCATCTGACTATCCGACTACTCTGCTTGAACTTTGTTTTCTGACCATATAGAAAAATGTTTGTTCTTGTACATATACCCTAGTTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 271 228</canonical_bands>
                <polymorphic_bands>772 228</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTGAACTATATGCCAACCTA</pcr_primer_p1>
		<pcr_primer_p2>AATTCTTGCAACTTTCTGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AAATTGAACTATATGCCAACCTATACTTGCACTTTAAGCTCAATTATCAAAATTACTGTAAGAGATATCAAAAATTTGTCAACTGATAAATTGTTTATCATAATATCATGAACGCTTTTTTAGTTTACAGATTTTTGAAATCGCTTACAGAAATTGAGATAACTGCGCTCAAATTGTAAGAATATGGCTTCCTATTAGAGCATTTGTGGTTTAGCATATATGTTAATTGTTTGAAACAGAAAGTTGCAAGAATT</canonical_amplicon>
		<polymorphic_amplicon>AAATTGAACTATATGCCAACCTATACTTGCACTTTAAGCTCAATTATCAAAATTACTGTAAGAGATATCAAAAATTTGTCAACTGATAAATTGTTTATCATAATATCATGAACGCTTTTTTAGTTTACAGATTTTTGAAATCGCTTACAGAAATTGAGATAACTGSGCTCAAATTGTAAGAATATGGCTTCCTATTAGAGCATTTGTGGTTTAGCATATATGTTAATTGTTTGAAACAGAAAGTTGCAAGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36453</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>121793</contig_pos>
        <strand></strand>
        <context>taagaatatg[G/A]cttcctatta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAAATCGCTTACAGAAATTGAGATAACTGCGCTCAAATTGTAAGAATATG</left_flank>
        <right_flank>CTTCCTATTAGAGCATTTGTGGTTTAGCATATATGTTAATTGTTTGAAAC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTTACAGGAAATGAGATAAATAGAGTTGAAGTTGGCATTTTAGGGTCATACAGGTTTTGCGGTAACAATCAAACTTCTTGTTAGAATTCAACGTTTTTCTTTGAGCTGATACCAGTTATCTGATCTTTTTTGAATATTCGATAGATCAAATGAAATTACTCGATGAATCGATCGGGCCGAAATTTAAAAATCAGATTTATTTGTTGCATACTGAACAAACTATGAAAGTTAAACGAATTATGGAAGTTTTGAAAAAAAAAATTTTCTGAAGCTTTCTAATTACACATCGAAAGTTTAAAGGAAAATGCTGAAAATTGAACTATATGCCAACCTATACTTGCACTTTAAGCTCAATTATCAAAATTACTGTAAGAGATATCAAAAATTTGTCAACTGATAAATTGTTTATCATAATATCATGAACGCTTTTTTAGTTTACAGATTTTTGAAATCGCTTACAGAAATTGAGATAACTGCGCTCAAATTGTAAGAATATGGCTTCCTATTAGAGCATTTGTGGTTTAGCATATATGTTAATTGTTTGAAACAGAAAGTTGCAAGAATTGTGAAAGTTTTCGGTTCTTGTTTAATCATAATTTCCTAATCGTATATCGTCTATGTTCTTTTCAAATTTATTGTAATTATACTTTAGAGAACTGAAAATCATTAGAGAATCCTTGTTTTTTTTCCAGAAGCGTTGGAAAAAAGTTTGAATATTTTCAAAAATTGAGAGCCAAATGTTGGAGGCGCATGCCTATGACAGAGTACCACATTCTCTCAATCTGAATAAGACATCGAAAATACTTCTGTTCCATCACTTTTAAGTAAGACTAAAGTAGTTTCGAAATGTGTTATGCAGATCAAACCGAAACTAATGTCAAATTAGGAATCCATCTGACTATCCGACTACTCTGCTTGAACTTTGTTTTCTGACCATATAGAAAAATGTTTGTTCTTGTACATATACCCTAGTTCCTGAAAACTCCAAAAATTATCTT</canonical>
            <polymorphic>ATCTTACAGGAAATGAGATAAATAGAGTTGAAGTTGGCATTTTAGGGTCATACAGGTTTTGCGGTAACAATCAAACTTCTTGTTAGAATTCAACGTTTTTCTTTGAGCTGATACCAGTTATCTGATCTTTTTTGAATATTCGATAGATCAAATGAAATTACTCGATGAATCGATCGGGCCGAAATTTAAAAATCAGATTTATTTGTTGCATACTGAACAAACTATGAAAGTTAAACGAATTATGGAAGTTTTGAAAAAAAAAATTTTCTGAAGCTTTCTAATTACACATCGAAAGTTTAAAGGAAAATGCTGAAAATTGAACTATATGCCAACCTATACTTGCACTTTAAGCTCAATTATCAAAATTACTGTAAGAGATATCAAAAATTTGTCAACTGATAAATTGTTTATCATAATATCATGAACGCTTTTTTAGTTTACAGATTTTTGAAATCGCTTACAGAAATTGAGATAACTGCGCTCAAATTGTAAGAATATGRCTTCCTATTAGAGCATTTGTGGTTTAGCATATATGTTAATTGTTTGAAACAGAAAGTTGCAAGAATTGTGAAAGTTTTCGGTTCTTGTTTAATCATAATTTCCTAATCGTATATCGTCTATGTTCTTTTCAAATTTATTGTAATTATACTTTAGAGAACTGAAAATCATTAGAGAATCCTTGTTTTTTTTCCAGAAGCGTTGGAAAAAAGTTTGAATATTTTCAAAAATTGAGAGCCAAATGTTGGAGGCGCATGCCTATGACAGAGTACCACATTCTCTCAATCTGAATAAGACATCGAAAATACTTCTGTTCCATCACTTTTAAGTAAGACTAAAGTAGTTTCGAAATGTGTTATGCAGATCAAACCGAAACTAATGTCAAATTAGGAATCCATCTGACTATCCGACTACTCTGCTTGAACTTTGTTTTCTGACCATATAGAAAAATGTTTGTTCTTGTACATATACCCTAGTTCCTGAAAACTCCAAAAATTATCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>265 235 149 107 95 78 71</canonical_bands>
                <polymorphic_bands>384 265 107 95 78 71</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTGAACTATATGCCAACCTA</pcr_primer_p1>
		<pcr_primer_p2>AATTCTTGCAACTTTCTGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AAATTGAACTATATGCCAACCTATACTTGCACTTTAAGCTCAATTATCAAAATTACTGTAAGAGATATCAAAAATTTGTCAACTGATAAATTGTTTATCATAATATCATGAACGCTTTTTTAGTTTACAGATTTTTGAAATCGCTTACAGAAATTGAGATAACTGCGCTCAAATTGTAAGAATATGGCTTCCTATTAGAGCATTTGTGGTTTAGCATATATGTTAATTGTTTGAAACAGAAAGTTGCAAGAATT</canonical_amplicon>
		<polymorphic_amplicon>AAATTGAACTATATGCCAACCTATACTTGCACTTTAAGCTCAATTATCAAAATTACTGTAAGAGATATCAAAAATTTGTCAACTGATAAATTGTTTATCATAATATCATGAACGCTTTTTTAGTTTACAGATTTTTGAAATCGCTTACAGAAATTGAGATAACTGCGCTCAAATTGTAAGAATATGRCTTCCTATTAGAGCATTTGTGGTTTAGCATATATGTTAATTGTTTGAAACAGAAAGTTGCAAGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36454</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>124694</contig_pos>
        <strand>+</strand>
        <context>AAATTTGAAA[A/T]AAAATGTTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGACAAAAGTGTCTAGATTTATGAGGAGAGAAAAGTGCAAAATTTGAAA</left_flank>
        <right_flank>AAAATGTTAGGTTTTTTTTGGGAAAAACTTGGGACCCACACCGAAAACTA</right_flank>
        <qual_score>134</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTCGAAACTAGTGAAATGACGGGCCCGCCGGGCCTCCGAAATTCCGGAAAAAGCCCGGCCCGGCCCGGTCCGGCCCGGCCCGTTACAAATATGGTGGGTAGTGAACAAGCTGACTAAAAATTCACGAAAATCGAGAAAAGACAATGCAGAAAATAAACATTTTTCAGGTTACGATAGTTTTATTATGGGATCTTTGGCTCCGATTTTTTTTGTAACAGAACAATAACACATATTTCAGGTTACGGTAGTTTTCGGTTCGAGCCTCCATTGAGTAGCGATTGATATAAACTACAGTATACCTGACTTCAATTCAACAATTTAACATAATTTTTCAAAAAAATATCGCCGTTCAGATTCCAATCATTAATACAACCTGTGGCAAACAGCTGCGACGAACCCGTTAATTCTCTTATCTGCCGACGTCATCAGACGGCGGCGTCGTTGTACAGACAAAAGTGTCTAGATTTATGAGGAGAGAAAAGTGCAAAATTTGAAAAAAAATGTTAGGTTTTTTTTGGGAAAAACTTGGGACCCACACCGAAAACTACCGTAACCTAATAATGTAATCTCTCCGGTTTTTTCTCGATTTTTAGTAGCGCAAATCCGTTTTATAGTGAGAAATGACCGGAAAATAGCCAAAAAATGAAGAAAAGAGAATAAATCGGAAAATAAAACTACTCTTTAGGTTACTGTAGTTGTCGTTGTTAAACCTTTTTTCCACCGAACCGATTTTTTGAAATTTTTGAAAAAAAAACAATTTTTTTCGATTTTTTTTTGTTTCCGGCCCGAATTTTTTCAGTCGCAAAATGAATGTTTTCTGTGGTTCTGAAATGGGCAGAAAATCGATAAAACCGGAAAAAAATATTTCTCAGGTTACGGTAGTGTTCGTTGTGAGACCTTCGTTTAAAGGTGTTTTTCTAACTTATTATGTCGTGAATAAGCCTCAAATAAGTAAAATAACTCTGAAATAGGCTCAAGTAATCCCTAAAATGCTAAA</canonical>
            <polymorphic>AATTTCGAAACTAGTGAAATGACGGGCCCGCCGGGCCTCCGAAATTCCGGAAAAAGCCCGGCCCGGCCCGGTCCGGCCCGGCCCGTTACAAATATGGTGGGTAGTGAACAAGCTGACTAAAAATTCACGAAAATCGAGAAAAGACAATGCAGAAAATAAACATTTTTCAGGTTACGATAGTTTTATTATGGGATCTTTGGCTCCGATTTTTTTTGTAACAGAACAATAACACATATTTCAGGTTACGGTAGTTTTCGGTTCGAGCCTCCATTGAGTAGCGATTGATATAAACTACAGTATACCTGACTTCAATTCAACAATTTAACATAATTTTTCAAAAAAATATCGCCGTTCAGATTCCAATCATTAATACAACCTGTGGCAAACAGCTGCGACGAACCCGTTAATTCTCTTATCTGCCGACGTCATCAGACGGCGGCGTCGTTGTACAGACAAAAGTGTCTAGATTTATGAGGAGAGAAAAGTGCAAAATTTGAAAWAAAATGTTAGGTTTTTTTTGGGAAAAACTTGGGACCCACACCGAAAACTACCGTAACCTAATAATGTAATCTCTCCGGTTTTTTCTCGATTTTTAGTAGCGCAAATCCGTTTTATAGTGAGAAATGACCGGAAAATAGCCAAAAAATGAAGAAAAGAGAATAAATCGGAAAATAAAACTACTCTTTAGGTTACTGTAGTTGTCGTTGTTAAACCTTTTTTCCACCGAACCGATTTTTTGAAATTTTTGAAAAAAAAACAATTTTTTTCGATTTTTTTTTGTTTCCGGCCCGAATTTTTTCAGTCGCAAAATGAATGTTTTCTGTGGTTCTGAAATGGGCAGAAAATCGATAAAACCGGAAAAAAATATTTCTCAGGTTACGGTAGTGTTCGTTGTGAGACCTTCGTTTAAAGGTGTTTTTCTAACTTATTATGTCGTGAATAAGCCTCAAATAAGTAAAATAACTCTGAAATAGGCTCAAGTAATCCCTAAAATGCTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTACAGACAAAAGTGTCTAGATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAACATTTATTGATTTTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>958</pcr_amplicon_size>
		<canonical_amplicon>TTGTACAGACAAAAGTGTCTAGATTTATGAGGAGAGAAAAGTGCAAAATTTGAAAAAAAATGTTAGGTTTTTTTTGGGA</canonical_amplicon>
		<polymorphic_amplicon>TTGTACAGACAAAAGTGTCTAGATTTATGAGGAGAGAAAAGTGCAAAATTTGAAAWAAAATGTTAGGTTTTTTTTGGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36455</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>124800</contig_pos>
        <strand></strand>
        <context>gtagcgcaaa[T/C]ccgttttata</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACCTAATAATGTAATCTCTCCGGTTTTTTCTCGATTTTTAGTAGCGCAAA</left_flank>
        <right_flank>CCGTTTTATAGTGAGAAATGACCGGAAAATAGCCAAAAAATGAAGAAAAG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAAGCTGACTAAAAATTCACGAAAATCGAGAAAAGACAATGCAGAAAATAAACATTTTTCAGGTTACGATAGTTTTATTATGGGATCTTTGGCTCCGATTTTTTTTGTAACAGAACAATAACACATATTTCAGGTTACGGTAGTTTTCGGTTCGAGCCTCCATTGAGTAGCGATTGATATAAACTACAGTATACCTGACTTCAATTCAACAATTTAACATAATTTTTCAAAAAAATATCGCCGTTCAGATTCCAATCATTAATACAACCTGTGGCAAACAGCTGCGACGAACCCGTTAATTCTCTTATCTGCCGACGTCATCAGACGGCGGCGTCGTTGTACAGACAAAAGTGTCTAGATTTATGAGGAGAGAAAAGTGCAAAATTTGAAAAAAAATGTTAGGTTTTTTTTGGGAAAAACTTGGGACCCACACCGAAAACTACCGTAACCTAATAATGTAATCTCTCCGGTTTTTTCTCGATTTTTAGTAGCGCAAATCCGTTTTATAGTGAGAAATGACCGGAAAATAGCCAAAAAATGAAGAAAAGAGAATAAATCGGAAAATAAAACTACTCTTTAGGTTACTGTAGTTGTCGTTGTTAAACCTTTTTTCCACCGAACCGATTTTTTGAAATTTTTGAAAAAAAAACAATTTTTTTCGATTTTTTTTTGTTTCCGGCCCGAATTTTTTCAGTCGCAAAATGAATGTTTTCTGTGGTTCTGAAATGGGCAGAAAATCGATAAAACCGGAAAAAAATATTTCTCAGGTTACGGTAGTGTTCGTTGTGAGACCTTCGTTTAAAGGTGTTTTTCTAACTTATTATGTCGTGAATAAGCCTCAAATAAGTAAAATAACTCTGAAATAGGCTCAAGTAATCCCTAAAATGCTAAAATAAGCCTAAAAAAGCTAAAATAGACTAAAGTGAGCCTGAAATATGCTAAAACGAATAAAGTAAGCCTGAAAACCCTGAAATATGCTAAAACAAGCCTAAAATACG</canonical>
            <polymorphic>AACAAGCTGACTAAAAATTCACGAAAATCGAGAAAAGACAATGCAGAAAATAAACATTTTTCAGGTTACGATAGTTTTATTATGGGATCTTTGGCTCCGATTTTTTTTGTAACAGAACAATAACACATATTTCAGGTTACGGTAGTTTTCGGTTCGAGCCTCCATTGAGTAGCGATTGATATAAACTACAGTATACCTGACTTCAATTCAACAATTTAACATAATTTTTCAAAAAAATATCGCCGTTCAGATTCCAATCATTAATACAACCTGTGGCAAACAGCTGCGACGAACCCGTTAATTCTCTTATCTGCCGACGTCATCAGACGGCGGCGTCGTTGTACAGACAAAAGTGTCTAGATTTATGAGGAGAGAAAAGTGCAAAATTTGAAAAAAAATGTTAGGTTTTTTTTGGGAAAAACTTGGGACCCACACCGAAAACTACCGTAACCTAATAATGTAATCTCTCCGGTTTTTTCTCGATTTTTAGTAGCGCAAAYCCGTTTTATAGTGAGAAATGACCGGAAAATAGCCAAAAAATGAAGAAAAGAGAATAAATCGGAAAATAAAACTACTCTTTAGGTTACTGTAGTTGTCGTTGTTAAACCTTTTTTCCACCGAACCGATTTTTTGAAATTTTTGAAAAAAAAACAATTTTTTTCGATTTTTTTTTGTTTCCGGCCCGAATTTTTTCAGTCGCAAAATGAATGTTTTCTGTGGTTCTGAAATGGGCAGAAAATCGATAAAACCGGAAAAAAATATTTCTCAGGTTACGGTAGTGTTCGTTGTGAGACCTTCGTTTAAAGGTGTTTTTCTAACTTATTATGTCGTGAATAAGCCTCAAATAAGTAAAATAACTCTGAAATAGGCTCAAGTAATCCCTAAAATGCTAAAATAAGCCTAAAAAAGCTAAAATAGACTAAAGTGAGCCTGAAATATGCTAAAACGAATAAAGTAAGCCTGAAAACCCTGAAATATGCTAAAACAAGCCTAAAATACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGAGAGAAAAGTGCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAACATTTATTGATTTTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>930</pcr_amplicon_size>
		<canonical_amplicon>GAGGAGAGAAAAGTGCAAAATTTGAAAAAAAATGTTAGGTTTTTTTTGGGAAAAACTTGGGACCCACACCGAAAACTACCGTAACCTAATAATGTAATCTCTCCGGTTTTTTCTCGATTTTTAGTAGCGCAAATCCGTTTTATAGTGAGAAATGACC</canonical_amplicon>
		<polymorphic_amplicon>GAGGAGAGAAAAGTGCAAAATTTGAAAAAAAATGTTAGGTTTTTTTTGGGAAAAACTTGGGACCCACACCGAAAACTACCGTAACCTAATAATGTAATCTCTCCGGTTTTTTCTCGATTTTTAGTAGCGCAAAYCCGTTTTATAGTGAGAAATGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36456</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>124903</contig_pos>
        <strand></strand>
        <context>ttgtcgttgt[T/G]aaaccttttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AATAAATCGGAAAATAAAACTACTCTTTAGGTTACTGTAGTTGTCGTTGT</left_flank>
        <right_flank>AAACCTTTTTTCCACCGAACCGATTTTTTGAAATTTTTGAAAAAAAAACA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTGTAACAGAACAATAACACATATTTCAGGTTACGGTAGTTTTCGGTTCGAGCCTCCATTGAGTAGCGATTGATATAAACTACAGTATACCTGACTTCAATTCAACAATTTAACATAATTTTTCAAAAAAATATCGCCGTTCAGATTCCAATCATTAATACAACCTGTGGCAAACAGCTGCGACGAACCCGTTAATTCTCTTATCTGCCGACGTCATCAGACGGCGGCGTCGTTGTACAGACAAAAGTGTCTAGATTTATGAGGAGAGAAAAGTGCAAAATTTGAAAAAAAATGTTAGGTTTTTTTTGGGAAAAACTTGGGACCCACACCGAAAACTACCGTAACCTAATAATGTAATCTCTCCGGTTTTTTCTCGATTTTTAGTAGCGCAAATCCGTTTTATAGTGAGAAATGACCGGAAAATAGCCAAAAAATGAAGAAAAGAGAATAAATCGGAAAATAAAACTACTCTTTAGGTTACTGTAGTTGTCGTTGTTAAACCTTTTTTCCACCGAACCGATTTTTTGAAATTTTTGAAAAAAAAACAATTTTTTTCGATTTTTTTTTGTTTCCGGCCCGAATTTTTTCAGTCGCAAAATGAATGTTTTCTGTGGTTCTGAAATGGGCAGAAAATCGATAAAACCGGAAAAAAATATTTCTCAGGTTACGGTAGTGTTCGTTGTGAGACCTTCGTTTAAAGGTGTTTTTCTAACTTATTATGTCGTGAATAAGCCTCAAATAAGTAAAATAACTCTGAAATAGGCTCAAGTAATCCCTAAAATGCTAAAATAAGCCTAAAAAAGCTAAAATAGACTAAAGTGAGCCTGAAATATGCTAAAACGAATAAAGTAAGCCTGAAAACCCTGAAATATGCTAAAACAAGCCTAAAATACGTAAAACAAGTCTACATTATGCTGAAATATGTAAAATAACCATAAAATAGGCTAAAGTAGGCTGAAATAAGCTGCTAAAACATGCTGAAAAATAAGCTTGGAAT</canonical>
            <polymorphic>TTTTTGTAACAGAACAATAACACATATTTCAGGTTACGGTAGTTTTCGGTTCGAGCCTCCATTGAGTAGCGATTGATATAAACTACAGTATACCTGACTTCAATTCAACAATTTAACATAATTTTTCAAAAAAATATCGCCGTTCAGATTCCAATCATTAATACAACCTGTGGCAAACAGCTGCGACGAACCCGTTAATTCTCTTATCTGCCGACGTCATCAGACGGCGGCGTCGTTGTACAGACAAAAGTGTCTAGATTTATGAGGAGAGAAAAGTGCAAAATTTGAAAAAAAATGTTAGGTTTTTTTTGGGAAAAACTTGGGACCCACACCGAAAACTACCGTAACCTAATAATGTAATCTCTCCGGTTTTTTCTCGATTTTTAGTAGCGCAAATCCGTTTTATAGTGAGAAATGACCGGAAAATAGCCAAAAAATGAAGAAAAGAGAATAAATCGGAAAATAAAACTACTCTTTAGGTTACTGTAGTTGTCGTTGTKAAACCTTTTTTCCACCGAACCGATTTTTTGAAATTTTTGAAAAAAAAACAATTTTTTTCGATTTTTTTTTGTTTCCGGCCCGAATTTTTTCAGTCGCAAAATGAATGTTTTCTGTGGTTCTGAAATGGGCAGAAAATCGATAAAACCGGAAAAAAATATTTCTCAGGTTACGGTAGTGTTCGTTGTGAGACCTTCGTTTAAAGGTGTTTTTCTAACTTATTATGTCGTGAATAAGCCTCAAATAAGTAAAATAACTCTGAAATAGGCTCAAGTAATCCCTAAAATGCTAAAATAAGCCTAAAAAAGCTAAAATAGACTAAAGTGAGCCTGAAATATGCTAAAACGAATAAAGTAAGCCTGAAAACCCTGAAATATGCTAAAACAAGCCTAAAATACGTAAAACAAGTCTACATTATGCTGAAATATGTAAAATAACCATAAAATAGGCTAAAGTAGGCTGAAATAAGCTGCTAAAACATGCTGAAAAATAAGCTTGGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>304 302 199 113 45 37</canonical_bands>
                <polymorphic_bands>503 302 113 45 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGAGAGAAAAGTGCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAACATTTATTGATTTTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>930</pcr_amplicon_size>
		<canonical_amplicon>GAGGAGAGAAAAGTGCAAAATTTGAAAAAAAATGTTAGGTTTTTTTTGGGAAAAACTTGGGACCCACACCGAAAACTACCGTAACCTAATAATGTAATCTCTCCGGTTTTTTCTCGATTTTTAGTAGCGCAAATCCGTTTTATAGTGAGAAATGACCGGAAAATAGCCAAAAAATGAAGAAAAGAGAATAAATCGGAAAATAAAACTACTCTTTAGGTTACTGTAGTTGTCGTTGTTAAACCTTTTTTCCACCGAACCGA</canonical_amplicon>
		<polymorphic_amplicon>GAGGAGAGAAAAGTGCAAAATTTGAAAAAAAATGTTAGGTTTTTTTTGGGAAAAACTTGGGACCCACACCGAAAACTACCGTAACCTAATAATGTAATCTCTCCGGTTTTTTCTCGATTTTTAGTAGCGCAAATCCGTTTTATAGTGAGAAATGACCGGAAAATAGCCAAAAAATGAAGAAAAGAGAATAAATCGGAAAATAAAACTACTCTTTAGGTTACTGTAGTTGTCGTTGTKAAACCTTTTTTCCACCGAACCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36457</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>124917</contig_pos>
        <strand>+</strand>
        <context>ccttttttcc[G/T]ccgaaccgat</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAAAACTACTCTTTAGGTTACTGTAGTTGTCGTTGTTAAACCTTTTTTCC</left_flank>
        <right_flank>CCGAACCGATTTTTTGAAATTTTTGAAAAAAAAACAATTTTTTTCGATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATAACACATATTTCAGGTTACGGTAGTTTTCGGTTCGAGCCTCCATTGAGTAGCGATTGATATAAACTACAGTATACCTGACTTCAATTCAACAATTTAACATAATTTTTCAAAAAAATATCGCCGTTCAGATTCCAATCATTAATACAACCTGTGGCAAACAGCTGCGACGAACCCGTTAATTCTCTTATCTGCCGACGTCATCAGACGGCGGCGTCGTTGTACAGACAAAAGTGTCTAGATTTATGAGGAGAGAAAAGTGCAAAATTTGAAAAAAAATGTTAGGTTTTTTTTGGGAAAAACTTGGGACCCACACCGAAAACTACCGTAACCTAATAATGTAATCTCTCCGGTTTTTTCTCGATTTTTAGTAGCGCAAATCCGTTTTATAGTGAGAAATGACCGGAAAATAGCCAAAAAATGAAGAAAAGAGAATAAATCGGAAAATAAAACTACTCTTTAGGTTACTGTAGTTGTCGTTGTTAAACCTTTTTTCCACCGAACCGATTTTTTGAAATTTTTGAAAAAAAAACAATTTTTTTCGATTTTTTTTTGTTTCCGGCCCGAATTTTTTCAGTCGCAAAATGAATGTTTTCTGTGGTTCTGAAATGGGCAGAAAATCGATAAAACCGGAAAAAAATATTTCTCAGGTTACGGTAGTGTTCGTTGTGAGACCTTCGTTTAAAGGTGTTTTTCTAACTTATTATGTCGTGAATAAGCCTCAAATAAGTAAAATAACTCTGAAATAGGCTCAAGTAATCCCTAAAATGCTAAAATAAGCCTAAAAAAGCTAAAATAGACTAAAGTGAGCCTGAAATATGCTAAAACGAATAAAGTAAGCCTGAAAACCCTGAAATATGCTAAAACAAGCCTAAAATACGTAAAACAAGTCTACATTATGCTGAAATATGTAAAATAACCATAAAATAGGCTAAAGTAGGCTGAAATAAGCTGCTAAAACATGCTGAAAAATAAGCTTGGAATATTTTAAAATATGC</canonical>
            <polymorphic>CAATAACACATATTTCAGGTTACGGTAGTTTTCGGTTCGAGCCTCCATTGAGTAGCGATTGATATAAACTACAGTATACCTGACTTCAATTCAACAATTTAACATAATTTTTCAAAAAAATATCGCCGTTCAGATTCCAATCATTAATACAACCTGTGGCAAACAGCTGCGACGAACCCGTTAATTCTCTTATCTGCCGACGTCATCAGACGGCGGCGTCGTTGTACAGACAAAAGTGTCTAGATTTATGAGGAGAGAAAAGTGCAAAATTTGAAAAAAAATGTTAGGTTTTTTTTGGGAAAAACTTGGGACCCACACCGAAAACTACCGTAACCTAATAATGTAATCTCTCCGGTTTTTTCTCGATTTTTAGTAGCGCAAATCCGTTTTATAGTGAGAAATGACCGGAAAATAGCCAAAAAATGAAGAAAAGAGAATAAATCGGAAAATAAAACTACTCTTTAGGTTACTGTAGTTGTCGTTGTTAAACCTTTTTTCCKCCGAACCGATTTTTTGAAATTTTTGAAAAAAAAACAATTTTTTTCGATTTTTTTTTGTTTCCGGCCCGAATTTTTTCAGTCGCAAAATGAATGTTTTCTGTGGTTCTGAAATGGGCAGAAAATCGATAAAACCGGAAAAAAATATTTCTCAGGTTACGGTAGTGTTCGTTGTGAGACCTTCGTTTAAAGGTGTTTTTCTAACTTATTATGTCGTGAATAAGCCTCAAATAAGTAAAATAACTCTGAAATAGGCTCAAGTAATCCCTAAAATGCTAAAATAAGCCTAAAAAAGCTAAAATAGACTAAAGTGAGCCTGAAATATGCTAAAACGAATAAAGTAAGCCTGAAAACCCTGAAATATGCTAAAACAAGCCTAAAATACGTAAAACAAGTCTACATTATGCTGAAATATGTAAAATAACCATAAAATAGGCTAAAGTAGGCTGAAATAAGCTGCTAAAACATGCTGAAAAATAAGCTTGGAATATTTTAAAATATGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>190 150 104 102 95 80 79 62 51 26 23 19 9 8 2</canonical_bands>
                <polymorphic_bands>206 190 150 95 80 79 62 51 26 23 19 9 8 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGAGAGAAAAGTGCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAACATTTATTGATTTTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>930</pcr_amplicon_size>
		<canonical_amplicon>GAGGAGAGAAAAGTGCAAAATTTGAAAAAAAATGTTAGGTTTTTTTTGGGAAAAACTTGGGACCCACACCGAAAACTACCGTAACCTAATAATGTAATCTCTCCGGTTTTTTCTCGATTTTTAGTAGCGCAAATCCGTTTTATAGTGAGAAATGACCGGAAAATAGCCAAAAAATGAAGAAAAGAGAATAAATCGGAAAATAAAACTACTCTTTAGGTTACTGTAGTTGTCGTTGTTAAACCTTTTTTCCACCGAACCGATTTTTTGAAATTTT</canonical_amplicon>
		<polymorphic_amplicon>GAGGAGAGAAAAGTGCAAAATTTGAAAAAAAATGTTAGGTTTTTTTTGGGAAAAACTTGGGACCCACACCGAAAACTACCGTAACCTAATAATGTAATCTCTCCGGTTTTTTCTCGATTTTTAGTAGCGCAAATCCGTTTTATAGTGAGAAATGACCGGAAAATAGCCAAAAAATGAAGAAAAGAGAATAAATCGGAAAATAAAACTACTCTTTAGGTTACTGTAGTTGTCGTTGTTAAACCTTTTTTCCKCCGAACCGATTTTTTGAAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36458</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>125022</contig_pos>
        <strand></strand>
        <context>tttctgtggt[T/C]ctgaaatggg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTGTTTCCGGCCCGAATTTTTTCAGTCGCAAAATGAATGTTTTCTGTGGT</left_flank>
        <right_flank>CTGAAATGGGCAGAAAATCGATAAAACCGGAAAAAAATATTTCTCAGGTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTTCAAAAAAATATCGCCGTTCAGATTCCAATCATTAATACAACCTGTGGCAAACAGCTGCGACGAACCCGTTAATTCTCTTATCTGCCGACGTCATCAGACGGCGGCGTCGTTGTACAGACAAAAGTGTCTAGATTTATGAGGAGAGAAAAGTGCAAAATTTGAAAAAAAATGTTAGGTTTTTTTTGGGAAAAACTTGGGACCCACACCGAAAACTACCGTAACCTAATAATGTAATCTCTCCGGTTTTTTCTCGATTTTTAGTAGCGCAAATCCGTTTTATAGTGAGAAATGACCGGAAAATAGCCAAAAAATGAAGAAAAGAGAATAAATCGGAAAATAAAACTACTCTTTAGGTTACTGTAGTTGTCGTTGTTAAACCTTTTTTCCACCGAACCGATTTTTTGAAATTTTTGAAAAAAAAACAATTTTTTTCGATTTTTTTTTGTTTCCGGCCCGAATTTTTTCAGTCGCAAAATGAATGTTTTCTGTGGTTCTGAAATGGGCAGAAAATCGATAAAACCGGAAAAAAATATTTCTCAGGTTACGGTAGTGTTCGTTGTGAGACCTTCGTTTAAAGGTGTTTTTCTAACTTATTATGTCGTGAATAAGCCTCAAATAAGTAAAATAACTCTGAAATAGGCTCAAGTAATCCCTAAAATGCTAAAATAAGCCTAAAAAAGCTAAAATAGACTAAAGTGAGCCTGAAATATGCTAAAACGAATAAAGTAAGCCTGAAAACCCTGAAATATGCTAAAACAAGCCTAAAATACGTAAAACAAGTCTACATTATGCTGAAATATGTAAAATAACCATAAAATAGGCTAAAGTAGGCTGAAATAAGCTGCTAAAACATGCTGAAAAATAAGCTTGGAATATTTTAAAATATGCCTGAAATAGGCTAAAATTAGCTTGAAATATGCTAAAATTAGCCTAAATTATGCAACAATAAGTTTAAAATAGGCTAAAATTGACCTAAAATACGTAAAACAAGCT</canonical>
            <polymorphic>AATTTTTCAAAAAAATATCGCCGTTCAGATTCCAATCATTAATACAACCTGTGGCAAACAGCTGCGACGAACCCGTTAATTCTCTTATCTGCCGACGTCATCAGACGGCGGCGTCGTTGTACAGACAAAAGTGTCTAGATTTATGAGGAGAGAAAAGTGCAAAATTTGAAAAAAAATGTTAGGTTTTTTTTGGGAAAAACTTGGGACCCACACCGAAAACTACCGTAACCTAATAATGTAATCTCTCCGGTTTTTTCTCGATTTTTAGTAGCGCAAATCCGTTTTATAGTGAGAAATGACCGGAAAATAGCCAAAAAATGAAGAAAAGAGAATAAATCGGAAAATAAAACTACTCTTTAGGTTACTGTAGTTGTCGTTGTTAAACCTTTTTTCCACCGAACCGATTTTTTGAAATTTTTGAAAAAAAAACAATTTTTTTCGATTTTTTTTTGTTTCCGGCCCGAATTTTTTCAGTCGCAAAATGAATGTTTTCTGTGGTYCTGAAATGGGCAGAAAATCGATAAAACCGGAAAAAAATATTTCTCAGGTTACGGTAGTGTTCGTTGTGAGACCTTCGTTTAAAGGTGTTTTTCTAACTTATTATGTCGTGAATAAGCCTCAAATAAGTAAAATAACTCTGAAATAGGCTCAAGTAATCCCTAAAATGCTAAAATAAGCCTAAAAAAGCTAAAATAGACTAAAGTGAGCCTGAAATATGCTAAAACGAATAAAGTAAGCCTGAAAACCCTGAAATATGCTAAAACAAGCCTAAAATACGTAAAACAAGTCTACATTATGCTGAAATATGTAAAATAACCATAAAATAGGCTAAAGTAGGCTGAAATAAGCTGCTAAAACATGCTGAAAAATAAGCTTGGAATATTTTAAAATATGCCTGAAATAGGCTAAAATTAGCTTGAAATATGCTAAAATTAGCCTAAATTATGCAACAATAAGTTTAAAATAGGCTAAAATTGACCTAAAATACGTAAAACAAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>361 236 163 137 76 27</canonical_bands>
                <polymorphic_bands>361 300 236 76 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGAGAGAAAAGTGCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAACATTTATTGATTTTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>930</pcr_amplicon_size>
		<canonical_amplicon>GAGGAGAGAAAAGTGCAAAATTTGAAAAAAAATGTTAGGTTTTTTTTGGGAAAAACTTGGGACCCACACCGAAAACTACCGTAACCTAATAATGTAATCTCTCCGGTTTTTTCTCGATTTTTAGTAGCGCAAATCCGTTTTATAGTGAGAAATGACCGGAAAATAGCCAAAAAATGAAGAAAAGAGAATAAATCGGAAAATAAAACTACTCTTTAGGTTACTGTAGTTGTCGTTGTTAAACCTTTTTTCCACCGAACCGATTTTTTGAAATTTTTGAAAAAAAAACAATTTTTTTCGATTTTTTTTTGTTTCCGGCCCGAATTTTTTCAGTCGCAAAATGAATGTTTTCTGTGGTTCTGAAATGGGCAGAAAATCGATA</canonical_amplicon>
		<polymorphic_amplicon>GAGGAGAGAAAAGTGCAAAATTTGAAAAAAAATGTTAGGTTTTTTTTGGGAAAAACTTGGGACCCACACCGAAAACTACCGTAACCTAATAATGTAATCTCTCCGGTTTTTTCTCGATTTTTAGTAGCGCAAATCCGTTTTATAGTGAGAAATGACCGGAAAATAGCCAAAAAATGAAGAAAAGAGAATAAATCGGAAAATAAAACTACTCTTTAGGTTACTGTAGTTGTCGTTGTTAAACCTTTTTTCCACCGAACCGATTTTTTGAAATTTTTGAAAAAAAAACAATTTTTTTCGATTTTTTTTTGTTTCCGGCCCGAATTTTTTCAGTCGCAAAATGAATGTTTTCTGTGGTYCTGAAATGGGCAGAAAATCGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36459</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>125092</contig_pos>
        <strand></strand>
        <context>ttcgttgtga[G/C]accttcgktt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GATAAAACCGGAAAAAAATATTTCTCAGGTTACGGTAGTGTTCGTTGTGA</left_flank>
        <right_flank>ACCTTCGTTTAAAGGTGTTTTTCTAACTTATTATGTCGTGAATAAGCCTC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCCGTTAATTCTCTTATCTGCCGACGTCATCAGACGGCGGCGTCGTTGTACAGACAAAAGTGTCTAGATTTATGAGGAGAGAAAAGTGCAAAATTTGAAAAAAAATGTTAGGTTTTTTTTGGGAAAAACTTGGGACCCACACCGAAAACTACCGTAACCTAATAATGTAATCTCTCCGGTTTTTTCTCGATTTTTAGTAGCGCAAATCCGTTTTATAGTGAGAAATGACCGGAAAATAGCCAAAAAATGAAGAAAAGAGAATAAATCGGAAAATAAAACTACTCTTTAGGTTACTGTAGTTGTCGTTGTTAAACCTTTTTTCCACCGAACCGATTTTTTGAAATTTTTGAAAAAAAAACAATTTTTTTCGATTTTTTTTTGTTTCCGGCCCGAATTTTTTCAGTCGCAAAATGAATGTTTTCTGTGGTTCTGAAATGGGCAGAAAATCGATAAAACCGGAAAAAAATATTTCTCAGGTTACGGTAGTGTTCGTTGTGAGACCTTCGTTTAAAGGTGTTTTTCTAACTTATTATGTCGTGAATAAGCCTCAAATAAGTAAAATAACTCTGAAATAGGCTCAAGTAATCCCTAAAATGCTAAAATAAGCCTAAAAAAGCTAAAATAGACTAAAGTGAGCCTGAAATATGCTAAAACGAATAAAGTAAGCCTGAAAACCCTGAAATATGCTAAAACAAGCCTAAAATACGTAAAACAAGTCTACATTATGCTGAAATATGTAAAATAACCATAAAATAGGCTAAAGTAGGCTGAAATAAGCTGCTAAAACATGCTGAAAAATAAGCTTGGAATATTTTAAAATATGCCTGAAATAGGCTAAAATTAGCTTGAAATATGCTAAAATTAGCCTAAATTATGCAACAATAAGTTTAAAATAGGCTAAAATTGACCTAAAATACGTAAAACAAGCTCAAAATAGGCCCTAAAATTTAAAATAAGCCAAAAAATAAGCGAATTTTCAGCTTAAAATCAATAAATGTT</canonical>
            <polymorphic>ACCCGTTAATTCTCTTATCTGCCGACGTCATCAGACGGCGGCGTCGTTGTACAGACAAAAGTGTCTAGATTTATGAGGAGAGAAAAGTGCAAAATTTGAAAAAAAATGTTAGGTTTTTTTTGGGAAAAACTTGGGACCCACACCGAAAACTACCGTAACCTAATAATGTAATCTCTCCGGTTTTTTCTCGATTTTTAGTAGCGCAAATCCGTTTTATAGTGAGAAATGACCGGAAAATAGCCAAAAAATGAAGAAAAGAGAATAAATCGGAAAATAAAACTACTCTTTAGGTTACTGTAGTTGTCGTTGTTAAACCTTTTTTCCACCGAACCGATTTTTTGAAATTTTTGAAAAAAAAACAATTTTTTTCGATTTTTTTTTGTTTCCGGCCCGAATTTTTTCAGTCGCAAAATGAATGTTTTCTGTGGTTCTGAAATGGGCAGAAAATCGATAAAACCGGAAAAAAATATTTCTCAGGTTACGGTAGTGTTCGTTGTGASACCTTCGTTTAAAGGTGTTTTTCTAACTTATTATGTCGTGAATAAGCCTCAAATAAGTAAAATAACTCTGAAATAGGCTCAAGTAATCCCTAAAATGCTAAAATAAGCCTAAAAAAGCTAAAATAGACTAAAGTGAGCCTGAAATATGCTAAAACGAATAAAGTAAGCCTGAAAACCCTGAAATATGCTAAAACAAGCCTAAAATACGTAAAACAAGTCTACATTATGCTGAAATATGTAAAATAACCATAAAATAGGCTAAAGTAGGCTGAAATAAGCTGCTAAAACATGCTGAAAAATAAGCTTGGAATATTTTAAAATATGCCTGAAATAGGCTAAAATTAGCTTGAAATATGCTAAAATTAGCCTAAATTATGCAACAATAAGTTTAAAATAGGCTAAAATTGACCTAAAATACGTAAAACAAGCTCAAAATAGGCCCTAAAATTTAAAATAAGCCAAAAAATAAGCGAATTTTCAGCTTAAAATCAATAAATGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGAGAGAAAAGTGCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAACATTTATTGATTTTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>930</pcr_amplicon_size>
		<canonical_amplicon>GAGGAGAGAAAAGTGCAAAATTTGAAAAAAAATGTTAGGTTTTTTTTGGGAAAAACTTGGGACCCACACCGAAAACTACCGTAACCTAATAATGTAATCTCTCCGGTTTTTTCTCGATTTTTAGTAGCGCAAATCCGTTTTATAGTGAGAAATGACCGGAAAATAGCCAAAAAATGAAGAAAAGAGAATAAATCGGAAAATAAAACTACTCTTTAGGTTACTGTAGTTGTCGTTGTTAAACCTTTTTTCCACCGAACCGATTTTTTGAAATTTTTGAAAAAAAAACAATTTTTTTCGATTTTTTTTTGTTTCCGGCCCGAATTTTTTCAGTCGCAAAATGAATGTTTTCTGTGGTTCTGAAATGGGCAGAAAATCGATAAAACCGGAAAAAAATATTTCTCAGGTTACGGTAGTGTTCGTTGTGAGACCTTCGTTTAAAGGTGTTTTTC</canonical_amplicon>
		<polymorphic_amplicon>GAGGAGAGAAAAGTGCAAAATTTGAAAAAAAATGTTAGGTTTTTTTTGGGAAAAACTTGGGACCCACACCGAAAACTACCGTAACCTAATAATGTAATCTCTCCGGTTTTTTCTCGATTTTTAGTAGCGCAAATCCGTTTTATAGTGAGAAATGACCGGAAAATAGCCAAAAAATGAAGAAAAGAGAATAAATCGGAAAATAAAACTACTCTTTAGGTTACTGTAGTTGTCGTTGTTAAACCTTTTTTCCACCGAACCGATTTTTTGAAATTTTTGAAAAAAAAACAATTTTTTTCGATTTTTTTTTGTTTCCGGCCCGAATTTTTTCAGTCGCAAAATGAATGTTTTCTGTGGTTCTGAAATGGGCAGAAAATCGATAAAACCGGAAAAAAATATTTCTCAGGTTACGGTAGTGTTCGTTGTGASACCTTCGTTTAAAGGTGTTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36460</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>125100</contig_pos>
        <strand>+</strand>
        <context>gasaccttcg[G/T]ttaaaggtgt</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGGAAAAAAATATTTCTCAGGTTACGGTAGTGTTCGTTGTGAGACCTTCG</left_flank>
        <right_flank>TTAAAGGTGTTTTTCTAACTTATTATGTCGTGAATAAGCCTCAAATAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCTCTTATCTGCCGACGTCATCAGACGGCGGCGTCGTTGTACAGACAAAAGTGTCTAGATTTATGAGGAGAGAAAAGTGCAAAATTTGAAAAAAAATGTTAGGTTTTTTTTGGGAAAAACTTGGGACCCACACCGAAAACTACCGTAACCTAATAATGTAATCTCTCCGGTTTTTTCTCGATTTTTAGTAGCGCAAATCCGTTTTATAGTGAGAAATGACCGGAAAATAGCCAAAAAATGAAGAAAAGAGAATAAATCGGAAAATAAAACTACTCTTTAGGTTACTGTAGTTGTCGTTGTTAAACCTTTTTTCCACCGAACCGATTTTTTGAAATTTTTGAAAAAAAAACAATTTTTTTCGATTTTTTTTTGTTTCCGGCCCGAATTTTTTCAGTCGCAAAATGAATGTTTTCTGTGGTTCTGAAATGGGCAGAAAATCGATAAAACCGGAAAAAAATATTTCTCAGGTTACGGTAGTGTTCGTTGTGAGACCTTCGTTTAAAGGTGTTTTTCTAACTTATTATGTCGTGAATAAGCCTCAAATAAGTAAAATAACTCTGAAATAGGCTCAAGTAATCCCTAAAATGCTAAAATAAGCCTAAAAAAGCTAAAATAGACTAAAGTGAGCCTGAAATATGCTAAAACGAATAAAGTAAGCCTGAAAACCCTGAAATATGCTAAAACAAGCCTAAAATACGTAAAACAAGTCTACATTATGCTGAAATATGTAAAATAACCATAAAATAGGCTAAAGTAGGCTGAAATAAGCTGCTAAAACATGCTGAAAAATAAGCTTGGAATATTTTAAAATATGCCTGAAATAGGCTAAAATTAGCTTGAAATATGCTAAAATTAGCCTAAATTATGCAACAATAAGTTTAAAATAGGCTAAAATTGACCTAAAATACGTAAAACAAGCTCAAAATAGGCCCTAAAATTTAAAATAAGCCAAAAAATAAGCGAATTTTCAGCTTAAAATCAATAAATGTTCAAAAATC</canonical>
            <polymorphic>ATTCTCTTATCTGCCGACGTCATCAGACGGCGGCGTCGTTGTACAGACAAAAGTGTCTAGATTTATGAGGAGAGAAAAGTGCAAAATTTGAAAAAAAATGTTAGGTTTTTTTTGGGAAAAACTTGGGACCCACACCGAAAACTACCGTAACCTAATAATGTAATCTCTCCGGTTTTTTCTCGATTTTTAGTAGCGCAAATCCGTTTTATAGTGAGAAATGACCGGAAAATAGCCAAAAAATGAAGAAAAGAGAATAAATCGGAAAATAAAACTACTCTTTAGGTTACTGTAGTTGTCGTTGTTAAACCTTTTTTCCACCGAACCGATTTTTTGAAATTTTTGAAAAAAAAACAATTTTTTTCGATTTTTTTTTGTTTCCGGCCCGAATTTTTTCAGTCGCAAAATGAATGTTTTCTGTGGTTCTGAAATGGGCAGAAAATCGATAAAACCGGAAAAAAATATTTCTCAGGTTACGGTAGTGTTCGTTGTGAGACCTTCGKTTAAAGGTGTTTTTCTAACTTATTATGTCGTGAATAAGCCTCAAATAAGTAAAATAACTCTGAAATAGGCTCAAGTAATCCCTAAAATGCTAAAATAAGCCTAAAAAAGCTAAAATAGACTAAAGTGAGCCTGAAATATGCTAAAACGAATAAAGTAAGCCTGAAAACCCTGAAATATGCTAAAACAAGCCTAAAATACGTAAAACAAGTCTACATTATGCTGAAATATGTAAAATAACCATAAAATAGGCTAAAGTAGGCTGAAATAAGCTGCTAAAACATGCTGAAAAATAAGCTTGGAATATTTTAAAATATGCCTGAAATAGGCTAAAATTAGCTTGAAATATGCTAAAATTAGCCTAAATTATGCAACAATAAGTTTAAAATAGGCTAAAATTGACCTAAAATACGTAAAACAAGCTCAAAATAGGCCCTAAAATTTAAAATAAGCCAAAAAATAAGCGAATTTTCAGCTTAAAATCAATAAATGTTCAAAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 306 74 60 58</canonical_bands>
                <polymorphic_bands>808 74 60 58</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGAGAGAAAAGTGCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAACATTTATTGATTTTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>930</pcr_amplicon_size>
		<canonical_amplicon>GAGGAGAGAAAAGTGCAAAATTTGAAAAAAAATGTTAGGTTTTTTTTGGGAAAAACTTGGGACCCACACCGAAAACTACCGTAACCTAATAATGTAATCTCTCCGGTTTTTTCTCGATTTTTAGTAGCGCAAATCCGTTTTATAGTGAGAAATGACCGGAAAATAGCCAAAAAATGAAGAAAAGAGAATAAATCGGAAAATAAAACTACTCTTTAGGTTACTGTAGTTGTCGTTGTTAAACCTTTTTTCCACCGAACCGATTTTTTGAAATTTTTGAAAAAAAAACAATTTTTTTCGATTTTTTTTTGTTTCCGGCCCGAATTTTTTCAGTCGCAAAATGAATGTTTTCTGTGGTTCTGAAATGGGCAGAAAATCGATAAAACCGGAAAAAAATATTTCTCAGGTTACGGTAGTGTTCGTTGTGAGACCTTCGTTTAAAGGTGTTTTTCTAACTTATTATGTCGTGAATAAGCCTCAAATAAGTAAAATAACTCTGAAATAGGCTCAAGTAATCCCTAAAATGCTAAAATAAGCCTAAAAAAGCTAAAATAGACTAAAGTGAGCCTGAAATATGCTAAAACGAATAAAGTAAGCCTGAAAACCCTGAAATATGCTAAAACAAGCCTAAAATACGTAAAACAAGTCTACATTATGCTGAAATATGTAAAATAACCATAAAATAGGCTAAAGTAGGCTGAAATAAGCTGCTAAAACATGCTGAAAAATAAGCTTGGAATATTTTAAAATATGCCTGAAATAGGCTAAAATTAGCTTGAAATATGCTAAAATTAGCCTAAATTATGCAACAATAAGTTTAAAATAGGCTAAAATTGACCTAAAATACGTAAAACAAGCTCAAAATAGGCCCTAAAATTTAAAATAAGCCAAAAAATAAGCGAATTTTCAGCTTAAAATCAATAAATGTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>GAGGAGAGAAAAGTGCAAAATTTGAAAAAAAATGTTAGGTTTTTTTTGGGAAAAACTTGGGACCCACACCGAAAACTACCGTAACCTAATAATGTAATCTCTCCGGTTTTTTCTCGATTTTTAGTAGCGCAAATCCGTTTTATAGTGAGAAATGACCGGAAAATAGCCAAAAAATGAAGAAAAGAGAATAAATCGGAAAATAAAACTACTCTTTAGGTTACTGTAGTTGTCGTTGTTAAACCTTTTTTCCACCGAACCGATTTTTTGAAATTTTTGAAAAAAAAACAATTTTTTTCGATTTTTTTTTGTTTCCGGCCCGAATTTTTTCAGTCGCAAAATGAATGTTTTCTGTGGTTCTGAAATGGGCAGAAAATCGATAAAACCGGAAAAAAATATTTCTCAGGTTACGGTAGTGTTCGTTGTGAGACCTTCGKTTAAAGGTGTTTTTCTAACTTATTATGTCGTGAATAAGCCTCAAATAAGTAAAATAACTCTGAAATAGGCTCAAGTAATCCCTAAAATGCTAAAATAAGCCTAAAAAAGCTAAAATAGACTAAAGTGAGCCTGAAATATGCTAAAACGAATAAAGTAAGCCTGAAAACCCTGAAATATGCTAAAACAAGCCTAAAATACGTAAAACAAGTCTACATTATGCTGAAATATGTAAAATAACCATAAAATAGGCTAAAGTAGGCTGAAATAAGCTGCTAAAACATGCTGAAAAATAAGCTTGGAATATTTTAAAATATGCCTGAAATAGGCTAAAATTAGCTTGAAATATGCTAAAATTAGCCTAAATTATGCAACAATAAGTTTAAAATAGGCTAAAATTGACCTAAAATACGTAAAACAAGCTCAAAATAGGCCCTAAAATTTAAAATAAGCCAAAAAATAAGCGAATTTTCAGCTTAAAATCAATAAATGTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36461</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>125126</contig_pos>
        <strand></strand>
        <context>tAACTTATTA[T/G]GTCGTGaata</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GTAGTGTTCGTTGTGAGACCTTCGTTTAAAGGTGTTTTTCTAACTTATTA</left_flank>
        <right_flank>GTCGTGAATAAGCCTCAAATAAGTAAAATAACTCTGAAATAGGCTCAAGT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGGCGGCGTCGTTGTACAGACAAAAGTGTCTAGATTTATGAGGAGAGAAAAGTGCAAAATTTGAAAAAAAATGTTAGGTTTTTTTTGGGAAAAACTTGGGACCCACACCGAAAACTACCGTAACCTAATAATGTAATCTCTCCGGTTTTTTCTCGATTTTTAGTAGCGCAAATCCGTTTTATAGTGAGAAATGACCGGAAAATAGCCAAAAAATGAAGAAAAGAGAATAAATCGGAAAATAAAACTACTCTTTAGGTTACTGTAGTTGTCGTTGTTAAACCTTTTTTCCACCGAACCGATTTTTTGAAATTTTTGAAAAAAAAACAATTTTTTTCGATTTTTTTTTGTTTCCGGCCCGAATTTTTTCAGTCGCAAAATGAATGTTTTCTGTGGTTCTGAAATGGGCAGAAAATCGATAAAACCGGAAAAAAATATTTCTCAGGTTACGGTAGTGTTCGTTGTGAGACCTTCGTTTAAAGGTGTTTTTCTAACTTATTATGTCGTGAATAAGCCTCAAATAAGTAAAATAACTCTGAAATAGGCTCAAGTAATCCCTAAAATGCTAAAATAAGCCTAAAAAAGCTAAAATAGACTAAAGTGAGCCTGAAATATGCTAAAACGAATAAAGTAAGCCTGAAAACCCTGAAATATGCTAAAACAAGCCTAAAATACGTAAAACAAGTCTACATTATGCTGAAATATGTAAAATAACCATAAAATAGGCTAAAGTAGGCTGAAATAAGCTGCTAAAACATGCTGAAAAATAAGCTTGGAATATTTTAAAATATGCCTGAAATAGGCTAAAATTAGCTTGAAATATGCTAAAATTAGCCTAAATTATGCAACAATAAGTTTAAAATAGGCTAAAATTGACCTAAAATACGTAAAACAAGCTCAAAATAGGCCCTAAAATTTAAAATAAGCCAAAAAATAAGCGAATTTTCAGCTTAAAATCAATAAATGTTCAAAAATCCAGAAAACGAAAATTTCGGAGATGAA</canonical>
            <polymorphic>ACGGCGGCGTCGTTGTACAGACAAAAGTGTCTAGATTTATGAGGAGAGAAAAGTGCAAAATTTGAAAAAAAATGTTAGGTTTTTTTTGGGAAAAACTTGGGACCCACACCGAAAACTACCGTAACCTAATAATGTAATCTCTCCGGTTTTTTCTCGATTTTTAGTAGCGCAAATCCGTTTTATAGTGAGAAATGACCGGAAAATAGCCAAAAAATGAAGAAAAGAGAATAAATCGGAAAATAAAACTACTCTTTAGGTTACTGTAGTTGTCGTTGTTAAACCTTTTTTCCACCGAACCGATTTTTTGAAATTTTTGAAAAAAAAACAATTTTTTTCGATTTTTTTTTGTTTCCGGCCCGAATTTTTTCAGTCGCAAAATGAATGTTTTCTGTGGTTCTGAAATGGGCAGAAAATCGATAAAACCGGAAAAAAATATTTCTCAGGTTACGGTAGTGTTCGTTGTGAGACCTTCGTTTAAAGGTGTTTTTCTAACTTATTAKGTCGTGAATAAGCCTCAAATAAGTAAAATAACTCTGAAATAGGCTCAAGTAATCCCTAAAATGCTAAAATAAGCCTAAAAAAGCTAAAATAGACTAAAGTGAGCCTGAAATATGCTAAAACGAATAAAGTAAGCCTGAAAACCCTGAAATATGCTAAAACAAGCCTAAAATACGTAAAACAAGTCTACATTATGCTGAAATATGTAAAATAACCATAAAATAGGCTAAAGTAGGCTGAAATAAGCTGCTAAAACATGCTGAAAAATAAGCTTGGAATATTTTAAAATATGCCTGAAATAGGCTAAAATTAGCTTGAAATATGCTAAAATTAGCCTAAATTATGCAACAATAAGTTTAAAATAGGCTAAAATTGACCTAAAATACGTAAAACAAGCTCAAAATAGGCCCTAAAATTTAAAATAAGCCAAAAAATAAGCGAATTTTCAGCTTAAAATCAATAAATGTTCAAAAATCCAGAAAACGAAAATTTCGGAGATGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGAGAGAAAAGTGCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAACATTTATTGATTTTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>930</pcr_amplicon_size>
		<canonical_amplicon>GAGGAGAGAAAAGTGCAAAATTTGAAAAAAAATGTTAGGTTTTTTTTGGGAAAAACTTGGGACCCACACCGAAAACTACCGTAACCTAATAATGTAATCTCTCCGGTTTTTTCTCGATTTTTAGTAGCGCAAATCCGTTTTATAGTGAGAAATGACCGGAAAATAGCCAAAAAATGAAGAAAAGAGAATAAATCGGAAAATAAAACTACTCTTTAGGTTACTGTAGTTGTCGTTGTTAAACCTTTTTTCCACCGAACCGATTTTTTGAAATTTTTGAAAAAAAAACAATTTTTTTCGATTTTTTTTTGTTTCCGGCCCGAATTTTTTCAGTCGCAAAATGAATGTTTTCTGTGGTTCTGAAATGGGCAGAAAATCGATAAAACCGGAAAAAAATATTTCTCAGGTTACGGTAGTGTTCGTTGTGAGACCTTCGTTTAAAGGTGTTTTTCTAACTTATTATGTCGTGAATAAGCCTCAAATAAGTAAAATAACTCTGAAATAGGCTCAAGTAATCCCTAAAATGCTAAAATAAGCCTAAAAAAGCTAAAATAGACTAAAGTGAGCCTGAAATATGCTAAAACGAATAAAGTAAGCCTGAAAACCCTGAAATATGCTAAAACAAGCCTAAAATACGTAAAACAAGTCTACATTATGCTGAAATATGTAAAATAACCATAAAATAGGCTAAAGTAGGCTGAAATAAGCTGCTAAAACATGCTGAAAAATAAGCTTGGAATATTTTAAAATATGCCTGAAATAGGCTAAAATTAGCTTGAAATATGCTAAAATTAGCCTAAATTATGCAACAATAAGTTTAAAATAGGCTAAAATTGACCTAAAATACGTAAAACAAGCTCAAAATAGGCCCTAAAATTTAAAATAAGCCAAAAAATAAGCGAATTTTCAGCTTAAAATCAATAAATGTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>GAGGAGAGAAAAGTGCAAAATTTGAAAAAAAATGTTAGGTTTTTTTTGGGAAAAACTTGGGACCCACACCGAAAACTACCGTAACCTAATAATGTAATCTCTCCGGTTTTTTCTCGATTTTTAGTAGCGCAAATCCGTTTTATAGTGAGAAATGACCGGAAAATAGCCAAAAAATGAAGAAAAGAGAATAAATCGGAAAATAAAACTACTCTTTAGGTTACTGTAGTTGTCGTTGTTAAACCTTTTTTCCACCGAACCGATTTTTTGAAATTTTTGAAAAAAAAACAATTTTTTTCGATTTTTTTTTGTTTCCGGCCCGAATTTTTTCAGTCGCAAAATGAATGTTTTCTGTGGTTCTGAAATGGGCAGAAAATCGATAAAACCGGAAAAAAATATTTCTCAGGTTACGGTAGTGTTCGTTGTGAGACCTTCGTTTAAAGGTGTTTTTCTAACTTATTAKGTCGTGAATAAGCCTCAAATAAGTAAAATAACTCTGAAATAGGCTCAAGTAATCCCTAAAATGCTAAAATAAGCCTAAAAAAGCTAAAATAGACTAAAGTGAGCCTGAAATATGCTAAAACGAATAAAGTAAGCCTGAAAACCCTGAAATATGCTAAAACAAGCCTAAAATACGTAAAACAAGTCTACATTATGCTGAAATATGTAAAATAACCATAAAATAGGCTAAAGTAGGCTGAAATAAGCTGCTAAAACATGCTGAAAAATAAGCTTGGAATATTTTAAAATATGCCTGAAATAGGCTAAAATTAGCTTGAAATATGCTAAAATTAGCCTAAATTATGCAACAATAAGTTTAAAATAGGCTAAAATTGACCTAAAATACGTAAAACAAGCTCAAAATAGGCCCTAAAATTTAAAATAAGCCAAAAAATAAGCGAATTTTCAGCTTAAAATCAATAAATGTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36462</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>155034</contig_pos>
        <strand></strand>
        <context>TTTCTAGTTT[T/C]YAATGATCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGGAATTGCACTGTTTCCATATTTTTGGATCATGCACAATTTTCTAGTTT</left_flank>
        <right_flank>CAATGATCCAACGATTAACATTGGCTGTTTCATATTCTCCTAATCTGGTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGCTAGGCATATCAATCTTTTTATCGAAAAGATTACTATACAATCTTACTATTTTCATTTGCTGTCTTCCTTTGAGAAACTTTCTCCGTCCATTGAAATTTCACAAATGGTTTCGAGTGATGCAAAATTTGCTAGTTTTCCATTATTCCTAGATAAACATTTACCGTTTCATTTTTTCTTGATAAGATTTCTTGTGTTCTTACAATTAGTTAGAATTGTTCGGTTTTATTTAGTGAATATGGGCGCTCCACTGCATTTTTTGCACTAAATTAACTCACTGCTTTAAATGGATGTCTTTTGAGATTATGTTCTTGCTTTTTTGGTGCTACTGAAAAAGATCCCTAATTCCAAAATAGTTGAAATGAAATTTTAACATTAGAAAAGAGTTTTGAGACAAATTTTTTCCAATGACTGGAATGCCAAAAATTATTGTTTACAGTTTTGAGTGGAATTGCACTGTTTCCATATTTTTGGATCATGCACAATTTTCTAGTTTTCAATGATCCAACGATTAACATTGGCTGTTTCATATTCTCCTAATCTGGTGTTTTGTTCTGTTTATTTTTATTTATTTATTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATGAAGGAGAAAACCGAGTTAGTAATTAGTTGAAATCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACAAGGGCTTCACCGGAAACACTTTGGCGGGTAAAGAGTTCCAACATCTGATTAGTTCCAACATCTGATTAAGTTCCAACATCTGATTACTGATTAACCAACATCTGATTACATCTGATTACTGTTCAAAATTAATCACGTTTTGTTTGTGTGTTGCCAAGTTTAGCATTTTAAGGTTATAGTGATGTCTTGTGAGATTAAGTAATTGCTTTTTTTTAGTGCTAGTTGCTCTGTGGG</canonical>
            <polymorphic>TTTTGCTAGGCATATCAATCTTTTTATCGAAAAGATTACTATACAATCTTACTATTTTCATTTGCTGTCTTCCTTTGAGAAACTTTCTCCGTCCATTGAAATTTCACAAATGGTTTCGAGTGATGCAAAATTTGCTAGTTTTCCATTATTCCTAGATAAACATTTACCGTTTCATTTTTTCTTGATAAGATTTCTTGTGTTCTTACAATTAGTTAGAATTGTTCGGTTTTATTTAGTGAATATGGGCGCTCCACTGCATTTTTTGCACTAAATTAACTCACTGCTTTAAATGGATGTCTTTTGAGATTATGTTCTTGCTTTTTTGGTGCTACTGAAAAAGATCCCTAATTCCAAAATAGTTGAAATGAAATTTTAACATTAGAAAAGAGTTTTGAGACAAATTTTTTCCAATGACTGGAATGCCAAAAATTATTGTTTACAGTTTTGAGTGGAATTGCACTGTTTCCATATTTTTGGATCATGCACAATTTTCTAGTTTYCAATGATCCAACGATTAACATTGGCTGTTTCATATTCTCCTAATCTGGTGTTTTGTTCTGTTTATTTTTATTTATTTATTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATGAAGGAGAAAACCGAGTTAGTAATTAGTTGAAATCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACAAGGGCTTCACCGGAAACACTTTGGCGGGTAAAGAGTTCCAACATCTGATTAGTTCCAACATCTGATTAAGTTCCAACATCTGATTACTGATTAACCAACATCTGATTACATCTGATTACTGTTCAAAATTAATCACGTTTTGTTTGTGTGTTGCCAAGTTTAGCATTTTAAGGTTATAGTGATGTCTTGTGAGATTAAGTAATTGCTTTTTTTTAGTGCTAGTTGCTCTGTGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTGTTTACAGTTTTGAGTGGA</pcr_primer_p1>
		<pcr_primer_p2>CTTCATCTCCCAATTACTACAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTATTGTTTACAGTTTTGAGTGGAATTGCACTGTTTCCATATTTTTGGATCATGCACAATTTTCTAGTTTTCAATGATCCAACGATTAACATTGGCTGTTTCATATTCTCCTAATCTGGTGTTTTGTTCTGTTTATTTTTATTTATTTATTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATGAAG</canonical_amplicon>
		<polymorphic_amplicon>TTATTGTTTACAGTTTTGAGTGGAATTGCACTGTTTCCATATTTTTGGATCATGCACAATTTTCTAGTTTYCAATGATCCAACGATTAACATTGGCTGTTTCATATTCTCCTAATCTGGTGTTTTGTTCTGTTTATTTTTATTTATTTATTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36463</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>155035</contig_pos>
        <strand>+</strand>
        <context>TTCTAGTTTY[C/T]AATGATCCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAATTGCACTGTTTCCATATTTTTGGATCATGCACAATTTTCTAGTTTT</left_flank>
        <right_flank>AATGATCCAACGATTAACATTGGCTGTTTCATATTCTCCTAATCTGGTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGCTAGGCATATCAATCTTTTTATCGAAAAGATTACTATACAATCTTACTATTTTCATTTGCTGTCTTCCTTTGAGAAACTTTCTCCGTCCATTGAAATTTCACAAATGGTTTCGAGTGATGCAAAATTTGCTAGTTTTCCATTATTCCTAGATAAACATTTACCGTTTCATTTTTTCTTGATAAGATTTCTTGTGTTCTTACAATTAGTTAGAATTGTTCGGTTTTATTTAGTGAATATGGGCGCTCCACTGCATTTTTTGCACTAAATTAACTCACTGCTTTAAATGGATGTCTTTTGAGATTATGTTCTTGCTTTTTTGGTGCTACTGAAAAAGATCCCTAATTCCAAAATAGTTGAAATGAAATTTTAACATTAGAAAAGAGTTTTGAGACAAATTTTTTCCAATGACTGGAATGCCAAAAATTATTGTTTACAGTTTTGAGTGGAATTGCACTGTTTCCATATTTTTGGATCATGCACAATTTTCTAGTTTTCAATGATCCAACGATTAACATTGGCTGTTTCATATTCTCCTAATCTGGTGTTTTGTTCTGTTTATTTTTATTTATTTATTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATGAAGGAGAAAACCGAGTTAGTAATTAGTTGAAATCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACAAGGGCTTCACCGGAAACACTTTGGCGGGTAAAGAGTTCCAACATCTGATTAGTTCCAACATCTGATTAAGTTCCAACATCTGATTACTGATTAACCAACATCTGATTACATCTGATTACTGTTCAAAATTAATCACGTTTTGTTTGTGTGTTGCCAAGTTTAGCATTTTAAGGTTATAGTGATGTCTTGTGAGATTAAGTAATTGCTTTTTTTTAGTGCTAGTTGCTCTGTGGGC</canonical>
            <polymorphic>TTTGCTAGGCATATCAATCTTTTTATCGAAAAGATTACTATACAATCTTACTATTTTCATTTGCTGTCTTCCTTTGAGAAACTTTCTCCGTCCATTGAAATTTCACAAATGGTTTCGAGTGATGCAAAATTTGCTAGTTTTCCATTATTCCTAGATAAACATTTACCGTTTCATTTTTTCTTGATAAGATTTCTTGTGTTCTTACAATTAGTTAGAATTGTTCGGTTTTATTTAGTGAATATGGGCGCTCCACTGCATTTTTTGCACTAAATTAACTCACTGCTTTAAATGGATGTCTTTTGAGATTATGTTCTTGCTTTTTTGGTGCTACTGAAAAAGATCCCTAATTCCAAAATAGTTGAAATGAAATTTTAACATTAGAAAAGAGTTTTGAGACAAATTTTTTCCAATGACTGGAATGCCAAAAATTATTGTTTACAGTTTTGAGTGGAATTGCACTGTTTCCATATTTTTGGATCATGCACAATTTTCTAGTTTTYAATGATCCAACGATTAACATTGGCTGTTTCATATTCTCCTAATCTGGTGTTTTGTTCTGTTTATTTTTATTTATTTATTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATGAAGGAGAAAACCGAGTTAGTAATTAGTTGAAATCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACAAGGGCTTCACCGGAAACACTTTGGCGGGTAAAGAGTTCCAACATCTGATTAGTTCCAACATCTGATTAAGTTCCAACATCTGATTACTGATTAACCAACATCTGATTACATCTGATTACTGTTCAAAATTAATCACGTTTTGTTTGTGTGTTGCCAAGTTTAGCATTTTAAGGTTATAGTGATGTCTTGTGAGATTAAGTAATTGCTTTTTTTTAGTGCTAGTTGCTCTGTGGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTGTTTACAGTTTTGAGTGGA</pcr_primer_p1>
		<pcr_primer_p2>CTTCATCTCCCAATTACTACAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTATTGTTTACAGTTTTGAGTGGAATTGCACTGTTTCCATATTTTTGGATCATGCACAATTTTCTAGTTTTCAATGATCCAACGATTAACATTGGCTGTTTCATATTCTCCTAATCTGGTGTTTTGTTCTGTTTATTTTTATTTATTTATTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATGAAG</canonical_amplicon>
		<polymorphic_amplicon>TTATTGTTTACAGTTTTGAGTGGAATTGCACTGTTTCCATATTTTTGGATCATGCACAATTTTCTAGTTTTYAATGATCCAACGATTAACATTGGCTGTTTCATATTCTCCTAATCTGGTGTTTTGTTCTGTTTATTTTTATTTATTTATTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36464</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>155240</contig_pos>
        <strand>+</strand>
        <context>ATTAGTTGAA[A/T]TCAAGACAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGTAGTAATTGGGAGATGAAGGAGAAAACCGAGTTAGTAATTAGTTGAA</left_flank>
        <right_flank>TCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTAGTTAGAATTGTTCGGTTTTATTTAGTGAATATGGGCGCTCCACTGCATTTTTTGCACTAAATTAACTCACTGCTTTAAATGGATGTCTTTTGAGATTATGTTCTTGCTTTTTTGGTGCTACTGAAAAAGATCCCTAATTCCAAAATAGTTGAAATGAAATTTTAACATTAGAAAAGAGTTTTGAGACAAATTTTTTCCAATGACTGGAATGCCAAAAATTATTGTTTACAGTTTTGAGTGGAATTGCACTGTTTCCATATTTTTGGATCATGCACAATTTTCTAGTTTTCAATGATCCAACGATTAACATTGGCTGTTTCATATTCTCCTAATCTGGTGTTTTGTTCTGTTTATTTTTATTTATTTATTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATGAAGGAGAAAACCGAGTTAGTAATTAGTTGAAATCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACAAGGGCTTCACCGGAAACACTTTGGCGGGTAAAGAGTTCCAACATCTGATTAGTTCCAACATCTGATTAAGTTCCAACATCTGATTACTGATTAACCAACATCTGATTACATCTGATTACTGTTCAAAATTAATCACGTTTTGTTTGTGTGTTGCCAAGTTTAGCATTTTAAGGTTATAGTGATGTCTTGTGAGATTAAGTAATTGCTTTTTTTTAGTGCTAGTTGCTCTGTGGGCAAAGAGTTTTGATTAATTCCAATGACTTGAAAACCAAAAAATCATGATTTGCATTTTTCGTCAGAATTTTGCTGTTTCTTTTCCTTGTTAGAAACGTTTTCGATAGTCCTTTGTTTTTGTTTTTTTTGAATGTTTATTGTGATATTCAAAACATTTACTCGTTGACCACTTTTTGATATCTTTTAAAGGAACCGAGATAAGTTTA</canonical>
            <polymorphic>AATTAGTTAGAATTGTTCGGTTTTATTTAGTGAATATGGGCGCTCCACTGCATTTTTTGCACTAAATTAACTCACTGCTTTAAATGGATGTCTTTTGAGATTATGTTCTTGCTTTTTTGGTGCTACTGAAAAAGATCCCTAATTCCAAAATAGTTGAAATGAAATTTTAACATTAGAAAAGAGTTTTGAGACAAATTTTTTCCAATGACTGGAATGCCAAAAATTATTGTTTACAGTTTTGAGTGGAATTGCACTGTTTCCATATTTTTGGATCATGCACAATTTTCTAGTTTTCAATGATCCAACGATTAACATTGGCTGTTTCATATTCTCCTAATCTGGTGTTTTGTTCTGTTTATTTTTATTTATTTATTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATGAAGGAGAAAACCGAGTTAGTAATTAGTTGAAWTCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACAAGGGCTTCACCGGAAACACTTTGGCGGGTAAAGAGTTCCAACATCTGATTAGTTCCAACATCTGATTAAGTTCCAACATCTGATTACTGATTAACCAACATCTGATTACATCTGATTACTGTTCAAAATTAATCACGTTTTGTTTGTGTGTTGCCAAGTTTAGCATTTTAAGGTTATAGTGATGTCTTGTGAGATTAAGTAATTGCTTTTTTTTAGTGCTAGTTGCTCTGTGGGCAAAGAGTTTTGATTAATTCCAATGACTTGAAAACCAAAAAATCATGATTTGCATTTTTCGTCAGAATTTTGCTGTTTCTTTTCCTTGTTAGAAACGTTTTCGATAGTCCTTTGTTTTTGTTTTTTTTGAATGTTTATTGTGATATTCAAAACATTTACTCGTTGACCACTTTTTGATATCTTTTAAAGGAACCGAGATAAGTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTAACACGTGAAATGTCTATG</pcr_primer_p1>
		<pcr_primer_p2>AATCAGATGTTGGAACTTAATCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATGAAGGAGAAAACCGAGTTAGTAATTAGTTGAAATCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACAAGGGCTTCACCGGAAACACTTTGGCGGGTAAAGAGTTCCAACATCTGATTAGTTCCAACATCTGATTAAGTTCCAACATCTGATT</canonical_amplicon>
		<polymorphic_amplicon>CACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATGAAGGAGAAAACCGAGTTAGTAATTAGTTGAAWTCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACAAGGGCTTCACCGGAAACACTTTGGCGGGTAAAGAGTTCCAACATCTGATTAGTTCCAACATCTGATTAAGTTCCAACATCTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36465</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>155299</contig_pos>
        <strand>+</strand>
        <context>AAGCCGCTGA[A/C]AAGGGCTTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGA</left_flank>
        <right_flank>AAGGGCTTCACCGGAAACACTTTGGCGGGTAAAGAGTTCCAACATCTGAT</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTAAATTAACTCACTGCTTTAAATGGATGTCTTTTGAGATTATGTTCTTGCTTTTTTGGTGCTACTGAAAAAGATCCCTAATTCCAAAATAGTTGAAATGAAATTTTAACATTAGAAAAGAGTTTTGAGACAAATTTTTTCCAATGACTGGAATGCCAAAAATTATTGTTTACAGTTTTGAGTGGAATTGCACTGTTTCCATATTTTTGGATCATGCACAATTTTCTAGTTTTCAATGATCCAACGATTAACATTGGCTGTTTCATATTCTCCTAATCTGGTGTTTTGTTCTGTTTATTTTTATTTATTTATTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATGAAGGAGAAAACCGAGTTAGTAATTAGTTGAAATCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACAAGGGCTTCACCGGAAACACTTTGGCGGGTAAAGAGTTCCAACATCTGATTAGTTCCAACATCTGATTAAGTTCCAACATCTGATTACTGATTAACCAACATCTGATTACATCTGATTACTGTTCAAAATTAATCACGTTTTGTTTGTGTGTTGCCAAGTTTAGCATTTTAAGGTTATAGTGATGTCTTGTGAGATTAAGTAATTGCTTTTTTTTAGTGCTAGTTGCTCTGTGGGCAAAGAGTTTTGATTAATTCCAATGACTTGAAAACCAAAAAATCATGATTTGCATTTTTCGTCAGAATTTTGCTGTTTCTTTTCCTTGTTAGAAACGTTTTCGATAGTCCTTTGTTTTTGTTTTTTTTGAATGTTTATTGTGATATTCAAAACATTTACTCGTTGACCACTTTTTGATATCTTTTAAAGGAACCGAGATAAGTTTAACATCAAAGGGTGACATTCTATTGAAATGTTTACGGTAGGTCTGTTATTGGGAGGTTCT</canonical>
            <polymorphic>CACTAAATTAACTCACTGCTTTAAATGGATGTCTTTTGAGATTATGTTCTTGCTTTTTTGGTGCTACTGAAAAAGATCCCTAATTCCAAAATAGTTGAAATGAAATTTTAACATTAGAAAAGAGTTTTGAGACAAATTTTTTCCAATGACTGGAATGCCAAAAATTATTGTTTACAGTTTTGAGTGGAATTGCACTGTTTCCATATTTTTGGATCATGCACAATTTTCTAGTTTTCAATGATCCAACGATTAACATTGGCTGTTTCATATTCTCCTAATCTGGTGTTTTGTTCTGTTTATTTTTATTTATTTATTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATGAAGGAGAAAACCGAGTTAGTAATTAGTTGAAATCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGAMAAGGGCTTCACCGGAAACACTTTGGCGGGTAAAGAGTTCCAACATCTGATTAGTTCCAACATCTGATTAAGTTCCAACATCTGATTACTGATTAACCAACATCTGATTACATCTGATTACTGTTCAAAATTAATCACGTTTTGTTTGTGTGTTGCCAAGTTTAGCATTTTAAGGTTATAGTGATGTCTTGTGAGATTAAGTAATTGCTTTTTTTTAGTGCTAGTTGCTCTGTGGGCAAAGAGTTTTGATTAATTCCAATGACTTGAAAACCAAAAAATCATGATTTGCATTTTTCGTCAGAATTTTGCTGTTTCTTTTCCTTGTTAGAAACGTTTTCGATAGTCCTTTGTTTTTGTTTTTTTTGAATGTTTATTGTGATATTCAAAACATTTACTCGTTGACCACTTTTTGATATCTTTTAAAGGAACCGAGATAAGTTTAACATCAAAGGGTGACATTCTATTGAAATGTTTACGGTAGGTCTGTTATTGGGAGGTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGTAATTGGGAGATGAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>AAAACGTGATTAATTTTGAACAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAGTAATTGGGAGATGAAGGAGAAAACCGAGTTAGTAATTAGTTGAAATCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACAAGGGCTTCACCGGAAACACTTTGGCGGGTAAAGAGTTCCAACATCTGATTAGTTCCAACATCTGATTAAGTTCCAACATCTGATTACTGATTAACCAACATCTGATTACATCTGATTACTGTTCAAAATTAATCACGTTTT</canonical_amplicon>
		<polymorphic_amplicon>GTAGTAATTGGGAGATGAAGGAGAAAACCGAGTTAGTAATTAGTTGAAATCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGAMAAGGGCTTCACCGGAAACACTTTGGCGGGTAAAGAGTTCCAACATCTGATTAGTTCCAACATCTGATTAAGTTCCAACATCTGATTACTGATTAACCAACATCTGATTACATCTGATTACTGTTCAAAATTAATCACGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36466</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>155389</contig_pos>
        <strand>+</strand>
        <context>TCTGATTACT[G/T]ATTAACCAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAACATCTGATTAGTTCCAACATCTGATTAAGTTCCAACATCTGATTACT</left_flank>
        <right_flank>ATTAACCAACATCTGATTACATCTGATTACTGTTCAAAATTAATCACGTT</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGTTGAAATGAAATTTTAACATTAGAAAAGAGTTTTGAGACAAATTTTTTCCAATGACTGGAATGCCAAAAATTATTGTTTACAGTTTTGAGTGGAATTGCACTGTTTCCATATTTTTGGATCATGCACAATTTTCTAGTTTTCAATGATCCAACGATTAACATTGGCTGTTTCATATTCTCCTAATCTGGTGTTTTGTTCTGTTTATTTTTATTTATTTATTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATGAAGGAGAAAACCGAGTTAGTAATTAGTTGAAATCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACAAGGGCTTCACCGGAAACACTTTGGCGGGTAAAGAGTTCCAACATCTGATTAGTTCCAACATCTGATTAAGTTCCAACATCTGATTACTGATTAACCAACATCTGATTACATCTGATTACTGTTCAAAATTAATCACGTTTTGTTTGTGTGTTGCCAAGTTTAGCATTTTAAGGTTATAGTGATGTCTTGTGAGATTAAGTAATTGCTTTTTTTTAGTGCTAGTTGCTCTGTGGGCAAAGAGTTTTGATTAATTCCAATGACTTGAAAACCAAAAAATCATGATTTGCATTTTTCGTCAGAATTTTGCTGTTTCTTTTCCTTGTTAGAAACGTTTTCGATAGTCCTTTGTTTTTGTTTTTTTTGAATGTTTATTGTGATATTCAAAACATTTACTCGTTGACCACTTTTTGATATCTTTTAAAGGAACCGAGATAAGTTTAACATCAAAGGGTGACATTCTATTGAAATGTTTACGGTAGGTCTGTTATTGGGAGGTTCTACAAAACCAAAATCAATGGATAACCGTTTCAAAAATGTTTTATGTAGACTCTGAGTTTTCTTCATCGTTTATTCGGACTTACCTTTCCCA</canonical>
            <polymorphic>ATAGTTGAAATGAAATTTTAACATTAGAAAAGAGTTTTGAGACAAATTTTTTCCAATGACTGGAATGCCAAAAATTATTGTTTACAGTTTTGAGTGGAATTGCACTGTTTCCATATTTTTGGATCATGCACAATTTTCTAGTTTTCAATGATCCAACGATTAACATTGGCTGTTTCATATTCTCCTAATCTGGTGTTTTGTTCTGTTTATTTTTATTTATTTATTTATTTCAACGAAGGGGAGAAAACCACTAACACGTGAAATGTCTATGAAACTAGGAGATATAACAGGGACATACATTTGTAGTAATTGGGAGATGAAGGAGAAAACCGAGTTAGTAATTAGTTGAAATCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACAAGGGCTTCACCGGAAACACTTTGGCGGGTAAAGAGTTCCAACATCTGATTAGTTCCAACATCTGATTAAGTTCCAACATCTGATTACTKATTAACCAACATCTGATTACATCTGATTACTGTTCAAAATTAATCACGTTTTGTTTGTGTGTTGCCAAGTTTAGCATTTTAAGGTTATAGTGATGTCTTGTGAGATTAAGTAATTGCTTTTTTTTAGTGCTAGTTGCTCTGTGGGCAAAGAGTTTTGATTAATTCCAATGACTTGAAAACCAAAAAATCATGATTTGCATTTTTCGTCAGAATTTTGCTGTTTCTTTTCCTTGTTAGAAACGTTTTCGATAGTCCTTTGTTTTTGTTTTTTTTGAATGTTTATTGTGATATTCAAAACATTTACTCGTTGACCACTTTTTGATATCTTTTAAAGGAACCGAGATAAGTTTAACATCAAAGGGTGACATTCTATTGAAATGTTTACGGTAGGTCTGTTATTGGGAGGTTCTACAAAACCAAAATCAATGGATAACCGTTTCAAAAATGTTTTATGTAGACTCTGAGTTTTCTTCATCGTTTATTCGGACTTACCTTTCCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTAATTGGGAGATGAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>ACAAAACGTGATTAATTTTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAGTAATTGGGAGATGAAGGAGAAAACCGAGTTAGTAATTAGTTGAAATCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACAAGGGCTTCACCGGAAACACTTTGGCGGGTAAAGAGTTCCAACATCTGATTAGTTCCAACATCTGATTAAGTTCCAACATCTGATTACTGATTAACCAACATCTGATTACATCTGATTACTGTTCAAAATTAATCACGTTTTGT</canonical_amplicon>
		<polymorphic_amplicon>TAGTAATTGGGAGATGAAGGAGAAAACCGAGTTAGTAATTAGTTGAAATCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACAAGGGCTTCACCGGAAACACTTTGGCGGGTAAAGAGTTCCAACATCTGATTAGTTCCAACATCTGATTAAGTTCCAACATCTGATTACTKATTAACCAACATCTGATTACATCTGATTACTGTTCAAAATTAATCACGTTTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36467</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>156710</contig_pos>
        <strand>+</strand>
        <context>AATATATTTT[G/T]TAGACGTCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>NNNNCGCCCACGTTTTATTGAATAGACAATAACAAAATCTAATATATTTT</left_flank>
        <right_flank>TAGACGTCAGAAGTTGAAAATACTGGGACCATCTCGAAAAAAAAGTTGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGCGTCTATCCGTTGATTCAGCAGGTATGAATTGCAATGTCGGGTGCTCTAAAATGATCGAAAAACAGGCAGCTGGGGGTTGAAGCCTGGATGTCATCATTGTTATTTTCGGCGAAAATTGCCAACTGTGGACCTCTACAAAAGTAGTTAAAAATTTTTAGATTTGTCTGAAAATTTCAATCAATACTAAACAAAAATAGAGCTTCAATTCTGCTGTTGACAACTTTTTTATACAACTGCGTCCAAATAAGATATAGTGCACGAAACTGTCTTGACTCTTAATTAAGTGATTTTTCTAGAAGTTTTAGTTTAGAGCGCTATATCTCATTTAGATAAATTTGTACAGAAAAATTGTCAATTACAAAATTGAAGCTCTGTTTTGGTTTAGTAGACATGCAAACTTTCAGACTCATCTATTGTCTATTTAATAAAACGTGGGCGNNNNNNNNNNCGCCCACGTTTTATTGAATAGACAATAACAAAATCTAATATATTTTTTAGACGTCAGAAGTTGAAAATACTGGGACCATCTCGAAAAAAAAGTTGTTAAAATAGTTGAGAAACGGTATTCTGATTTCCTGATTATCTTCGGTTTAAATACCAGTTTTCTAGGAGCTGAGATATAGGCTTTTGAAGTTTAGATGTCTGCCTTGTGGCGAGCGAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAATCTGAAAATCGCTGTATCTTGGCTCCCAGACGGCCTGGAAAGTTCTTTTTTTTCAAAGAAATCAATGTTTCAAGAACCCCATTTGATTGGTTTTATAGATAACTGAAACATTAAATGTCAATAGAATGATAATAACTTTCAGAATCCCCTGCAAGGCTTCCAAGCGAGCTCTCTCCTCCCAACATCAATGCTCACTCCAAAATCCGATTTCGAGGAAGATACGCCAGAACGAGTTGCCACTCCATCACCAATGGATATTCTCAACAGAATGGTTCTTCAGCTGGACCAACGTAAACCA</canonical>
            <polymorphic>GATGCGTCTATCCGTTGATTCAGCAGGTATGAATTGCAATGTCGGGTGCTCTAAAATGATCGAAAAACAGGCAGCTGGGGGTTGAAGCCTGGATGTCATCATTGTTATTTTCGGCGAAAATTGCCAACTGTGGACCTCTACAAAAGTAGTTAAAAATTTTTAGATTTGTCTGAAAATTTCAATCAATACTAAACAAAAATAGAGCTTCAATTCTGCTGTTGACAACTTTTTTATACAACTGCGTCCAAATAAGATATAGTGCACGAAACTGTCTTGACTCTTAATTAAGTGATTTTTCTAGAAGTTTTAGTTTAGAGCGCTATATCTCATTTAGATAAATTTGTACAGAAAAATTGTCAATTACAAAATTGAAGCTCTGTTTTGGTTTAGTAGACATGCAAACTTTCAGACTCATCTATTGTCTATTTAATAAAACGTGGGCGNNNNNNNNNNCGCCCACGTTTTATTGAATAGACAATAACAAAATCTAATATATTTTKTAGACGTCAGAAGTTGAAAATACTGGGACCATCTCGAAAAAAAAGTTGTTAAAATAGTTGAGAAACGGTATTCTGATTTCCTGATTATCTTCGGTTTAAATACCAGTTTTCTAGGAGCTGAGATATAGGCTTTTGAAGTTTAGATGTCTGCCTTGTGGCGAGCGAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAATCTGAAAATCGCTGTATCTTGGCTCCCAGACGGCCTGGAAAGTTCTTTTTTTTCAAAGAAATCAATGTTTCAAGAACCCCATTTGATTGGTTTTATAGATAACTGAAACATTAAATGTCAATAGAATGATAATAACTTTCAGAATCCCCTGCAAGGCTTCCAAGCGAGCTCTCTCCTCCCAACATCAATGCTCACTCCAAAATCCGATTTCGAGGAAGATACGCCAGAACGAGTTGCCACTCCATCACCAATGGATATTCTCAACAGAATGGTTCTTCAGCTGGACCAACGTAAACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCTAAAATGATCGAAAAACA</pcr_primer_p1>
		<pcr_primer_p2>ATCAGAATACCGTTTCTCAACTA</pcr_primer_p2>
		<pcr_amplicon_size>530</pcr_amplicon_size>
		<canonical_amplicon>GCTCTAAAATGATCGAAAAACAGGCAGCTGGGGGTTGAAGCCTGGATGTCATCATTGTTATTTTCGGCGAAAATTGCCAACTGTGGACCTCTACAAAAGTAGTTAAAAATTTTTAGATTTGTCTGAAAATTTCAATCAATACTAAACAAAAATAGAGCTTCAATTCTGCTGTTGACAACTTTTTTATACAACTGCGTCCAAATAAGATATAGTGCACGAAACTGTCTTGACTCTTAATTAAGTGATTTTTCTAGAAGTTTTAGTTTAGAGCGCTATATCTCATTTAGATAAATTTGTACAGAAAAATTGTCAATTACAAAATTGAAGCTCTGTTTTGGTTTAGTAGACATGCAAACTTTCAGACTCATCTATTGTCTATTTAATAAAACGTGGGCGNNNNNNNNNNCGCCCACGTTTTATTGAATAGACAATAACAAAATCTAATATATTTTTTAGACGTCAGAAGTTGAAAATACTGGGACCATCTCGAAAAAAAAGTTGTTAAAATAGTTGAGAAACGGTATTCTGAT</canonical_amplicon>
		<polymorphic_amplicon>GCTCTAAAATGATCGAAAAACAGGCAGCTGGGGGTTGAAGCCTGGATGTCATCATTGTTATTTTCGGCGAAAATTGCCAACTGTGGACCTCTACAAAAGTAGTTAAAAATTTTTAGATTTGTCTGAAAATTTCAATCAATACTAAACAAAAATAGAGCTTCAATTCTGCTGTTGACAACTTTTTTATACAACTGCGTCCAAATAAGATATAGTGCACGAAACTGTCTTGACTCTTAATTAAGTGATTTTTCTAGAAGTTTTAGTTTAGAGCGCTATATCTCATTTAGATAAATTTGTACAGAAAAATTGTCAATTACAAAATTGAAGCTCTGTTTTGGTTTAGTAGACATGCAAACTTTCAGACTCATCTATTGTCTATTTAATAAAACGTGGGCGNNNNNNNNNNCGCCCACGTTTTATTGAATAGACAATAACAAAATCTAATATATTTTKTAGACGTCAGAAGTTGAAAATACTGGGACCATCTCGAAAAAAAAGTTGTTAAAATAGTTGAGAAACGGTATTCTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36468</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>156818</contig_pos>
        <strand></strand>
        <context>aaataccagt[T/G]ttctaggagc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTGAGAAACGGTATTCTGATTTCCTGATTATCTTCGGTTTAAATACCAGT</left_flank>
        <right_flank>TTCTAGGAGCTGAGATATAGGCTTTTGAAGTTTAGATGTCTGCCTTGTGG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGGCGAAAATTGCCAACTGTGGACCTCTACAAAAGTAGTTAAAAATTTTTAGATTTGTCTGAAAATTTCAATCAATACTAAACAAAAATAGAGCTTCAATTCTGCTGTTGACAACTTTTTTATACAACTGCGTCCAAATAAGATATAGTGCACGAAACTGTCTTGACTCTTAATTAAGTGATTTTTCTAGAAGTTTTAGTTTAGAGCGCTATATCTCATTTAGATAAATTTGTACAGAAAAATTGTCAATTACAAAATTGAAGCTCTGTTTTGGTTTAGTAGACATGCAAACTTTCAGACTCATCTATTGTCTATTTAATAAAACGTGGGCGNNNNNNNNNNCGCCCACGTTTTATTGAATAGACAATAACAAAATCTAATATATTTTTTAGACGTCAGAAGTTGAAAATACTGGGACCATCTCGAAAAAAAAGTTGTTAAAATAGTTGAGAAACGGTATTCTGATTTCCTGATTATCTTCGGTTTAAATACCAGTTTTCTAGGAGCTGAGATATAGGCTTTTGAAGTTTAGATGTCTGCCTTGTGGCGAGCGAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAATCTGAAAATCGCTGTATCTTGGCTCCCAGACGGCCTGGAAAGTTCTTTTTTTTCAAAGAAATCAATGTTTCAAGAACCCCATTTGATTGGTTTTATAGATAACTGAAACATTAAATGTCAATAGAATGATAATAACTTTCAGAATCCCCTGCAAGGCTTCCAAGCGAGCTCTCTCCTCCCAACATCAATGCTCACTCCAAAATCCGATTTCGAGGAAGATACGCCAGAACGAGTTGCCACTCCATCACCAATGGATATTCTCAACAGAATGGTTCTTCAGCTGGACCAACGTAAACCATTTTCCCTGCGTCTTCCCGACAATTTTAAGCCACTCGGAGAGGCGGAATTGAGCAAAATTGATATGGCTCTTACCAAATACTTGTTGATTCATAATGAGCTGAGAGAG</canonical>
            <polymorphic>TTTCGGCGAAAATTGCCAACTGTGGACCTCTACAAAAGTAGTTAAAAATTTTTAGATTTGTCTGAAAATTTCAATCAATACTAAACAAAAATAGAGCTTCAATTCTGCTGTTGACAACTTTTTTATACAACTGCGTCCAAATAAGATATAGTGCACGAAACTGTCTTGACTCTTAATTAAGTGATTTTTCTAGAAGTTTTAGTTTAGAGCGCTATATCTCATTTAGATAAATTTGTACAGAAAAATTGTCAATTACAAAATTGAAGCTCTGTTTTGGTTTAGTAGACATGCAAACTTTCAGACTCATCTATTGTCTATTTAATAAAACGTGGGCGNNNNNNNNNNCGCCCACGTTTTATTGAATAGACAATAACAAAATCTAATATATTTTTTAGACGTCAGAAGTTGAAAATACTGGGACCATCTCGAAAAAAAAGTTGTTAAAATAGTTGAGAAACGGTATTCTGATTTCCTGATTATCTTCGGTTTAAATACCAGTKTTCTAGGAGCTGAGATATAGGCTTTTGAAGTTTAGATGTCTGCCTTGTGGCGAGCGAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAATCTGAAAATCGCTGTATCTTGGCTCCCAGACGGCCTGGAAAGTTCTTTTTTTTCAAAGAAATCAATGTTTCAAGAACCCCATTTGATTGGTTTTATAGATAACTGAAACATTAAATGTCAATAGAATGATAATAACTTTCAGAATCCCCTGCAAGGCTTCCAAGCGAGCTCTCTCCTCCCAACATCAATGCTCACTCCAAAATCCGATTTCGAGGAAGATACGCCAGAACGAGTTGCCACTCCATCACCAATGGATATTCTCAACAGAATGGTTCTTCAGCTGGACCAACGTAAACCATTTTCCCTGCGTCTTCCCGACAATTTTAAGCCACTCGGAGAGGCGGAATTGAGCAAAATTGATATGGCTCTTACCAAATACTTGTTGATTCATAATGAGCTGAGAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTAAAATAGTTGAGAAACGGTAT</pcr_primer_p1>
		<pcr_primer_p2>AAATGGGGTTCTTGAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TGTTAAAATAGTTGAGAAACGGTATTCTGATTTCCTGATTATCTTCGGTTTAAATACCAGTTTTCTAGGAGCTGAGATATAGGCTTTTGAAGTTTAGATGTCTGCCTTGTGGCGAGCGAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAATCTGAAAATCGCTGTATCTTGGCTCCCAGACGGCCTGGAAAGTTCTTTTTTTTCAAAGAAATCAATGTTTCAAGAACCCCATTT</canonical_amplicon>
		<polymorphic_amplicon>TGTTAAAATAGTTGAGAAACGGTATTCTGATTTCCTGATTATCTTCGGTTTAAATACCAGTKTTCTAGGAGCTGAGATATAGGCTTTTGAAGTTTAGATGTCTGCCTTGTGGCGAGCGAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAATCTGAAAATCGCTGTATCTTGGCTCCCAGACGGCCTGGAAAGTTCTTTTTTTTCAAAGAAATCAATGTTTCAAGAACCCCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36469</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>157040</contig_pos>
        <strand>+</strand>
        <context>TCAATAGAAT[C/G]ATAATAACTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCCATTTGATTGGTTTTATAGATAACTGAAACATTAAATGTCAATAGAAT</left_flank>
        <right_flank>ATAATAACTTTCAGAATCCCCTGCAAGGCTTCCAAGCGAGCTCTCTCCTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGATAAATTTGTACAGAAAAATTGTCAATTACAAAATTGAAGCTCTGTTTTGGTTTAGTAGACATGCAAACTTTCAGACTCATCTATTGTCTATTTAATAAAACGTGGGCGNNNNNNNNNNCGCCCACGTTTTATTGAATAGACAATAACAAAATCTAATATATTTTTTAGACGTCAGAAGTTGAAAATACTGGGACCATCTCGAAAAAAAAGTTGTTAAAATAGTTGAGAAACGGTATTCTGATTTCCTGATTATCTTCGGTTTAAATACCAGTTTTCTAGGAGCTGAGATATAGGCTTTTGAAGTTTAGATGTCTGCCTTGTGGCGAGCGAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAATCTGAAAATCGCTGTATCTTGGCTCCCAGACGGCCTGGAAAGTTCTTTTTTTTCAAAGAAATCAATGTTTCAAGAACCCCATTTGATTGGTTTTATAGATAACTGAAACATTAAATGTCAATAGAATGATAATAACTTTCAGAATCCCCTGCAAGGCTTCCAAGCGAGCTCTCTCCTCCCAACATCAATGCTCACTCCAAAATCCGATTTCGAGGAAGATACGCCAGAACGAGTTGCCACTCCATCACCAATGGATATTCTCAACAGAATGGTTCTTCAGCTGGACCAACGTAAACCATTTTCCCTGCGTCTTCCCGACAATTTTAAGCCACTCGGAGAGGCGGAATTGAGCAAAATTGATATGGCTCTTACCAAATACTTGTTGATTCATAATGAGCTGAGAGAGGAGTTGATGGCAAAGAAGCATGAGATTCCAACATTCTTCCCAGAAGCCAAAAGGGAGGAGTTGAGAATGTTTGTGGCGGATTACTGTAGACAGGACGCAGAGTTTCATATGCTGAAAGTGGAGGGGAGAAATGAGGTGAGTTTCAACATCGGCAGATTGACTGAATGAATTTTGAAACTTCCAAAAATTGTTAATTCAACGAAACAGTAGAATTTATTCGGA</canonical>
            <polymorphic>TTAGATAAATTTGTACAGAAAAATTGTCAATTACAAAATTGAAGCTCTGTTTTGGTTTAGTAGACATGCAAACTTTCAGACTCATCTATTGTCTATTTAATAAAACGTGGGCGNNNNNNNNNNCGCCCACGTTTTATTGAATAGACAATAACAAAATCTAATATATTTTTTAGACGTCAGAAGTTGAAAATACTGGGACCATCTCGAAAAAAAAGTTGTTAAAATAGTTGAGAAACGGTATTCTGATTTCCTGATTATCTTCGGTTTAAATACCAGTTTTCTAGGAGCTGAGATATAGGCTTTTGAAGTTTAGATGTCTGCCTTGTGGCGAGCGAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAATCTGAAAATCGCTGTATCTTGGCTCCCAGACGGCCTGGAAAGTTCTTTTTTTTCAAAGAAATCAATGTTTCAAGAACCCCATTTGATTGGTTTTATAGATAACTGAAACATTAAATGTCAATAGAATSATAATAACTTTCAGAATCCCCTGCAAGGCTTCCAAGCGAGCTCTCTCCTCCCAACATCAATGCTCACTCCAAAATCCGATTTCGAGGAAGATACGCCAGAACGAGTTGCCACTCCATCACCAATGGATATTCTCAACAGAATGGTTCTTCAGCTGGACCAACGTAAACCATTTTCCCTGCGTCTTCCCGACAATTTTAAGCCACTCGGAGAGGCGGAATTGAGCAAAATTGATATGGCTCTTACCAAATACTTGTTGATTCATAATGAGCTGAGAGAGGAGTTGATGGCAAAGAAGCATGAGATTCCAACATTCTTCCCAGAAGCCAAAAGGGAGGAGTTGAGAATGTTTGTGGCGGATTACTGTAGACAGGACGCAGAGTTTCATATGCTGAAAGTGGAGGGGAGAAATGAGGTGAGTTTCAACATCGGCAGATTGACTGAATGAATTTTGAAACTTCCAAAAATTGTTAATTCAACGAAACAGTAGAATTTATTCGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTTTCAAGAACCCCATTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAATGGTTTACGTTGGTC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ATGTTTCAAGAACCCCATTTGATTGGTTTTATAGATAACTGAAACATTAAATGTCAATAGAATGATAATAACTTTCAGAATCCCCTGCAAGGCTTCCAAGCGAGCTCTCTCCTCCCAACATCAATGCTCACTCCAAAATCCGATTTCGAGGAAGATACGCCAGAACGAGTTGCCACTCCATCACCAATGGATATTCTCAACAGAATGGTTCTTCAGCTGGACCAACGTAAACCATTTTC</canonical_amplicon>
		<polymorphic_amplicon>ATGTTTCAAGAACCCCATTTGATTGGTTTTATAGATAACTGAAACATTAAATGTCAATAGAATSATAATAACTTTCAGAATCCCCTGCAAGGCTTCCAAGCGAGCTCTCTCCTCCCAACATCAATGCTCACTCCAAAATCCGATTTCGAGGAAGATACGCCAGAACGAGTTGCCACTCCATCACCAATGGATATTCTCAACAGAATGGTTCTTCAGCTGGACCAACGTAAACCATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36470</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>157067</contig_pos>
        <strand>+</strand>
        <context>TCCCCTGCAA[A/G]GCTTCCAAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAACATTAAATGTCAATAGAATGATAATAACTTTCAGAATCCCCTGCAA</left_flank>
        <right_flank>GCTTCCAAGCGAGCTCTCTCCTCCCAACATCAATGCTCACTCCAAAATCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATTACAAAATTGAAGCTCTGTTTTGGTTTAGTAGACATGCAAACTTTCAGACTCATCTATTGTCTATTTAATAAAACGTGGGCGNNNNNNNNNNCGCCCACGTTTTATTGAATAGACAATAACAAAATCTAATATATTTTTTAGACGTCAGAAGTTGAAAATACTGGGACCATCTCGAAAAAAAAGTTGTTAAAATAGTTGAGAAACGGTATTCTGATTTCCTGATTATCTTCGGTTTAAATACCAGTTTTCTAGGAGCTGAGATATAGGCTTTTGAAGTTTAGATGTCTGCCTTGTGGCGAGCGAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAATCTGAAAATCGCTGTATCTTGGCTCCCAGACGGCCTGGAAAGTTCTTTTTTTTCAAAGAAATCAATGTTTCAAGAACCCCATTTGATTGGTTTTATAGATAACTGAAACATTAAATGTCAATAGAATGATAATAACTTTCAGAATCCCCTGCAAGGCTTCCAAGCGAGCTCTCTCCTCCCAACATCAATGCTCACTCCAAAATCCGATTTCGAGGAAGATACGCCAGAACGAGTTGCCACTCCATCACCAATGGATATTCTCAACAGAATGGTTCTTCAGCTGGACCAACGTAAACCATTTTCCCTGCGTCTTCCCGACAATTTTAAGCCACTCGGAGAGGCGGAATTGAGCAAAATTGATATGGCTCTTACCAAATACTTGTTGATTCATAATGAGCTGAGAGAGGAGTTGATGGCAAAGAAGCATGAGATTCCAACATTCTTCCCAGAAGCCAAAAGGGAGGAGTTGAGAATGTTTGTGGCGGATTACTGTAGACAGGACGCAGAGTTTCATATGCTGAAAGTGGAGGGGAGAAATGAGGTGAGTTTCAACATCGGCAGATTGACTGAATGAATTTTGAAACTTCCAAAAATTGTTAATTCAACGAAACAGTAGAATTTATTCGGACTGTATCGACTACATGTTTCAAATTTG</canonical>
            <polymorphic>CAATTACAAAATTGAAGCTCTGTTTTGGTTTAGTAGACATGCAAACTTTCAGACTCATCTATTGTCTATTTAATAAAACGTGGGCGNNNNNNNNNNCGCCCACGTTTTATTGAATAGACAATAACAAAATCTAATATATTTTTTAGACGTCAGAAGTTGAAAATACTGGGACCATCTCGAAAAAAAAGTTGTTAAAATAGTTGAGAAACGGTATTCTGATTTCCTGATTATCTTCGGTTTAAATACCAGTTTTCTAGGAGCTGAGATATAGGCTTTTGAAGTTTAGATGTCTGCCTTGTGGCGAGCGAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAATCTGAAAATCGCTGTATCTTGGCTCCCAGACGGCCTGGAAAGTTCTTTTTTTTCAAAGAAATCAATGTTTCAAGAACCCCATTTGATTGGTTTTATAGATAACTGAAACATTAAATGTCAATAGAATGATAATAACTTTCAGAATCCCCTGCAARGCTTCCAAGCGAGCTCTCTCCTCCCAACATCAATGCTCACTCCAAAATCCGATTTCGAGGAAGATACGCCAGAACGAGTTGCCACTCCATCACCAATGGATATTCTCAACAGAATGGTTCTTCAGCTGGACCAACGTAAACCATTTTCCCTGCGTCTTCCCGACAATTTTAAGCCACTCGGAGAGGCGGAATTGAGCAAAATTGATATGGCTCTTACCAAATACTTGTTGATTCATAATGAGCTGAGAGAGGAGTTGATGGCAAAGAAGCATGAGATTCCAACATTCTTCCCAGAAGCCAAAAGGGAGGAGTTGAGAATGTTTGTGGCGGATTACTGTAGACAGGACGCAGAGTTTCATATGCTGAAAGTGGAGGGGAGAAATGAGGTGAGTTTCAACATCGGCAGATTGACTGAATGAATTTTGAAACTTCCAAAAATTGTTAATTCAACGAAACAGTAGAATTTATTCGGACTGTATCGACTACATGTTTCAAATTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>243 203 123 112 95 55 48 37 32 17 12 12 11</canonical_bands>
                <polymorphic_bands>243 203 135 112 95 55 48 37 32 17 12 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGTTTTATAGATAACTGAAACATT</pcr_primer_p1>
		<pcr_primer_p2>CTCTCCGAGTGGCTTAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTGGTTTTATAGATAACTGAAACATTAAATGTCAATAGAATGATAATAACTTTCAGAATCCCCTGCAAGGCTTCCAAGCGAGCTCTCTCCTCCCAACATCAATGCTCACTCCAAAATCCGATTTCGAGGAAGATACGCCAGAACGAGTTGCCACTCCATCACCAATGGATATTCTCAACAGAATGGTTCTTCAGCTGGACCAACGTAAACCATTTTCCCTGCGTCTTCCCGACAATTTTAAGCCACTCGGAGAG</canonical_amplicon>
		<polymorphic_amplicon>TTGGTTTTATAGATAACTGAAACATTAAATGTCAATAGAATGATAATAACTTTCAGAATCCCCTGCAARGCTTCCAAGCGAGCTCTCTCCTCCCAACATCAATGCTCACTCCAAAATCCGATTTCGAGGAAGATACGCCAGAACGAGTTGCCACTCCATCACCAATGGATATTCTCAACAGAATGGTTCTTCAGCTGGACCAACGTAAACCATTTTCCCTGCGTCTTCCCGACAATTTTAAGCCACTCGGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36471</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>157312</contig_pos>
        <strand>+</strand>
        <context>ATAATGAGCT[C/G]AGAGAGGAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGCAAAATTGATATGGCTCTTACCAAATACTTGTTGATTCATAATGAGCT</left_flank>
        <right_flank>AGAGAGGAGTTGATGGCAAAGAAGCATGAGATTCCAACATTCTTCCCAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGTTTTCTAGGAGCTGAGATATAGGCTTTTGAAGTTTAGATGTCTGCCTTGTGGCGAGCGAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAATCTGAAAATCGCTGTATCTTGGCTCCCAGACGGCCTGGAAAGTTCTTTTTTTTCAAAGAAATCAATGTTTCAAGAACCCCATTTGATTGGTTTTATAGATAACTGAAACATTAAATGTCAATAGAATGATAATAACTTTCAGAATCCCCTGCAAGGCTTCCAAGCGAGCTCTCTCCTCCCAACATCAATGCTCACTCCAAAATCCGATTTCGAGGAAGATACGCCAGAACGAGTTGCCACTCCATCACCAATGGATATTCTCAACAGAATGGTTCTTCAGCTGGACCAACGTAAACCATTTTCCCTGCGTCTTCCCGACAATTTTAAGCCACTCGGAGAGGCGGAATTGAGCAAAATTGATATGGCTCTTACCAAATACTTGTTGATTCATAATGAGCTGAGAGAGGAGTTGATGGCAAAGAAGCATGAGATTCCAACATTCTTCCCAGAAGCCAAAAGGGAGGAGTTGAGAATGTTTGTGGCGGATTACTGTAGACAGGACGCAGAGTTTCATATGCTGAAAGTGGAGGGGAGAAATGAGGTGAGTTTCAACATCGGCAGATTGACTGAATGAATTTTGAAACTTCCAAAAATTGTTAATTCAACGAAACAGTAGAATTTATTCGGACTGTATCGACTACATGTTTCAAATTTGCTAAGCACTTTGAACAAACCTAGAGTTTCCTTTTTCTTGCTGACAAGCTTTTTTGGAAATCAGTTCGTGAGAAAATACCGTAAAACTTGTAAGGACACTCTTACTTTTACCTTTGAGCTAACTTTTTTCGGTTCCTGTCAAAGATATGAAAAGGTTGTTAACTGATAAATTGTTTATCATAATATCAGAAACATTTTGTTCTTTGACACATTTTTGATATCTTAAATAAAAATTGAGATGATTGA</canonical>
            <polymorphic>CCAGTTTTCTAGGAGCTGAGATATAGGCTTTTGAAGTTTAGATGTCTGCCTTGTGGCGAGCGAGAGACGCAGCGTGTCTCGTTGTCTGCGTCTCTCCAAATCTGAAAATCGCTGTATCTTGGCTCCCAGACGGCCTGGAAAGTTCTTTTTTTTCAAAGAAATCAATGTTTCAAGAACCCCATTTGATTGGTTTTATAGATAACTGAAACATTAAATGTCAATAGAATGATAATAACTTTCAGAATCCCCTGCAAGGCTTCCAAGCGAGCTCTCTCCTCCCAACATCAATGCTCACTCCAAAATCCGATTTCGAGGAAGATACGCCAGAACGAGTTGCCACTCCATCACCAATGGATATTCTCAACAGAATGGTTCTTCAGCTGGACCAACGTAAACCATTTTCCCTGCGTCTTCCCGACAATTTTAAGCCACTCGGAGAGGCGGAATTGAGCAAAATTGATATGGCTCTTACCAAATACTTGTTGATTCATAATGAGCTSAGAGAGGAGTTGATGGCAAAGAAGCATGAGATTCCAACATTCTTCCCAGAAGCCAAAAGGGAGGAGTTGAGAATGTTTGTGGCGGATTACTGTAGACAGGACGCAGAGTTTCATATGCTGAAAGTGGAGGGGAGAAATGAGGTGAGTTTCAACATCGGCAGATTGACTGAATGAATTTTGAAACTTCCAAAAATTGTTAATTCAACGAAACAGTAGAATTTATTCGGACTGTATCGACTACATGTTTCAAATTTGCTAAGCACTTTGAACAAACCTAGAGTTTCCTTTTTCTTGCTGACAAGCTTTTTTGGAAATCAGTTCGTGAGAAAATACCGTAAAACTTGTAAGGACACTCTTACTTTTACCTTTGAGCTAACTTTTTTCGGTTCCTGTCAAAGATATGAAAAGGTTGTTAACTGATAAATTGTTTATCATAATATCAGAAACATTTTGTTCTTTGACACATTTTTGATATCTTAAATAAAAATTGAGATGATTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTCTCAACAGAATGGTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>CTGCGTCCTGTCTACAGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATTCTCAACAGAATGGTTCTTCAGCTGGACCAACGTAAACCATTTTCCCTGCGTCTTCCCGACAATTTTAAGCCACTCGGAGAGGCGGAATTGAGCAAAATTGATATGGCTCTTACCAAATACTTGTTGATTCATAATGAGCTGAGAGAGGAGTTGATGGCAAAGAAGCATGAGATTCCAACATTCTTCCCAGAAGCCAAAAGGGAGGAGTTGAGAATGTTTGTGGCGGATTACTGTAGACAGGACGCAG</canonical_amplicon>
		<polymorphic_amplicon>TATTCTCAACAGAATGGTTCTTCAGCTGGACCAACGTAAACCATTTTCCCTGCGTCTTCCCGACAATTTTAAGCCACTCGGAGAGGCGGAATTGAGCAAAATTGATATGGCTCTTACCAAATACTTGTTGATTCATAATGAGCTSAGAGAGGAGTTGATGGCAAAGAAGCATGAGATTCCAACATTCTTCCCAGAAGCCAAAAGGGAGGAGTTGAGAATGTTTGTGGCGGATTACTGTAGACAGGACGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36472</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>161979</contig_pos>
        <strand></strand>
        <context>ttttttgtga[T/A]cgattttcct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GCGTGAAAAATTCTCACTGAAAATCTACTGAAAATCGTTTTTTTTTGTGA</left_flank>
        <right_flank>CGATTTTCCTGTTTTTGAGATAGGAAAATGAATTCGAACCAGATTTTCTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTCTTTTTGAAACATCATTGCGAAACACAAATGATTCTTGGAAGATCAGAGAATCAAAAAAAGACAAAAGACGAAAACTTTCGGTACAAATGATATCATACATTTTTTCCAGATTTTGATGCTTTATGCCTAGTCGAAAGTATCGCGAATTCCAACAGATCACAAATAATGCTAAACACCTAAATGGGCGATTTATCAATTTTGGAAGGATAGATCAAAGTCAGCATTAATTTATTCAGGCAACTCATAAACTTTCAAAAAATCAACTGTATCATTCTTATATAAATAAACGAAGTTGCGTATCTTTGTCAATTTGCACGATTTTTGAACAGCTTGAAAGTTGAATATAGATTGACGGGACTCTTTGAGAAAGATAAATCAAAAAGTGAGGTGCGACGGAAAATTCGACGCAGGCGCGCCAGCCAGGCTAATTAAGATAAAGGAAAGCGTGAAAAATTCTCACTGAAAATCTACTGAAAATCGTTTTTTTTTGTGATCGATTTTCCTGTTTTTGAGATAGGAAAATGAATTCGAACCAGATTTTCTCAATTATTATCAACTGAAAAATGTTAAATTTTGAATAAAGTACTCTGAATTTATAGATCTATCCATTCATGTCACTTGTATCGAAACGATAGTTTTTGAGTAGAAAATTAACAACATGACAGTTTTTTTTAAAAGGAAGTGATTTAAAGGCGGTGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATCCAAGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGATGGCCGCGGCCAGGTGTGAGTTTTTCAGGCCAACTGTCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCGGTGTTTTCTCAGATGTCTTTTAAAGATTTCAAAATGTTTTTGTTAATTTCCTCCCAGGTGTATGAAAAAACCTGACAAAAATCTGAGAAAA</canonical>
            <polymorphic>AAACTCTTTTTGAAACATCATTGCGAAACACAAATGATTCTTGGAAGATCAGAGAATCAAAAAAAGACAAAAGACGAAAACTTTCGGTACAAATGATATCATACATTTTTTCCAGATTTTGATGCTTTATGCCTAGTCGAAAGTATCGCGAATTCCAACAGATCACAAATAATGCTAAACACCTAAATGGGCGATTTATCAATTTTGGAAGGATAGATCAAAGTCAGCATTAATTTATTCAGGCAACTCATAAACTTTCAAAAAATCAACTGTATCATTCTTATATAAATAAACGAAGTTGCGTATCTTTGTCAATTTGCACGATTTTTGAACAGCTTGAAAGTTGAATATAGATTGACGGGACTCTTTGAGAAAGATAAATCAAAAAGTGAGGTGCGACGGAAAATTCGACGCAGGCGCGCCAGCCAGGCTAATTAAGATAAAGGAAAGCGTGAAAAATTCTCACTGAAAATCTACTGAAAATCGTTTTTTTTTGTGAWCGATTTTCCTGTTTTTGAGATAGGAAAATGAATTCGAACCAGATTTTCTCAATTATTATCAACTGAAAAATGTTAAATTTTGAATAAAGTACTCTGAATTTATAGATCTATCCATTCATGTCACTTGTATCGAAACGATAGTTTTTGAGTAGAAAATTAACAACATGACAGTTTTTTTTAAAAGGAAGTGATTTAAAGGCGGTGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATCCAAGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGATGGCCGCGGCCAGGTGTGAGTTTTTCAGGCCAACTGTCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCGGTGTTTTCTCAGATGTCTTTTAAAGATTTCAAAATGTTTTTGTTAATTTCCTCCCAGGTGTATGAAAAAACCTGACAAAAATCTGAGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>282 250 146 114 107 55 46</canonical_bands>
                <polymorphic_bands>389 250 146 114 55 46</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>271 179 138 110 96 92 80 34</canonical_bands>
                <polymorphic_bands>271 179 138 126 110 96 80</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGAAAGCGTGAAAAATTC</pcr_primer_p1>
		<pcr_primer_p2>CCATTCAAGAACATTTACCTAGT</pcr_primer_p2>
		<pcr_amplicon_size>822</pcr_amplicon_size>
		<canonical_amplicon>AAGGAAAGCGTGAAAAATTCTCACTGAAAATCTACTGAAAATCGTTTTTTTTTGTGATCGATTTTCCTGTTTTTGAGATA</canonical_amplicon>
		<polymorphic_amplicon>AAGGAAAGCGTGAAAAATTCTCACTGAAAATCTACTGAAAATCGTTTTTTTTTGTGAWCGATTTTCCTGTTTTTGAGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36473</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>161999</contig_pos>
        <strand></strand>
        <context>tgtttttgag[A/G]taggaaaatg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATCTACTGAAAATCGTTTTTTTTTGTGATCGATTTTCCTGTTTTTGAG</left_flank>
        <right_flank>TAGGAAAATGAATTCGAACCAGATTTTCTCAATTATTATCAACTGAAAAA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCGAAACACAAATGATTCTTGGAAGATCAGAGAATCAAAAAAAGACAAAAGACGAAAACTTTCGGTACAAATGATATCATACATTTTTTCCAGATTTTGATGCTTTATGCCTAGTCGAAAGTATCGCGAATTCCAACAGATCACAAATAATGCTAAACACCTAAATGGGCGATTTATCAATTTTGGAAGGATAGATCAAAGTCAGCATTAATTTATTCAGGCAACTCATAAACTTTCAAAAAATCAACTGTATCATTCTTATATAAATAAACGAAGTTGCGTATCTTTGTCAATTTGCACGATTTTTGAACAGCTTGAAAGTTGAATATAGATTGACGGGACTCTTTGAGAAAGATAAATCAAAAAGTGAGGTGCGACGGAAAATTCGACGCAGGCGCGCCAGCCAGGCTAATTAAGATAAAGGAAAGCGTGAAAAATTCTCACTGAAAATCTACTGAAAATCGTTTTTTTTTGTGATCGATTTTCCTGTTTTTGAGATAGGAAAATGAATTCGAACCAGATTTTCTCAATTATTATCAACTGAAAAATGTTAAATTTTGAATAAAGTACTCTGAATTTATAGATCTATCCATTCATGTCACTTGTATCGAAACGATAGTTTTTGAGTAGAAAATTAACAACATGACAGTTTTTTTTAAAAGGAAGTGATTTAAAGGCGGTGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATCCAAGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGATGGCCGCGGCCAGGTGTGAGTTTTTCAGGCCAACTGTCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCGGTGTTTTCTCAGATGTCTTTTAAAGATTTCAAAATGTTTTTGTTAATTTCCTCCCAGGTGTATGAAAAAACCTGACAAAAATCTGAGAAAACACTGAAAATCAATAAAAAT</canonical>
            <polymorphic>TTGCGAAACACAAATGATTCTTGGAAGATCAGAGAATCAAAAAAAGACAAAAGACGAAAACTTTCGGTACAAATGATATCATACATTTTTTCCAGATTTTGATGCTTTATGCCTAGTCGAAAGTATCGCGAATTCCAACAGATCACAAATAATGCTAAACACCTAAATGGGCGATTTATCAATTTTGGAAGGATAGATCAAAGTCAGCATTAATTTATTCAGGCAACTCATAAACTTTCAAAAAATCAACTGTATCATTCTTATATAAATAAACGAAGTTGCGTATCTTTGTCAATTTGCACGATTTTTGAACAGCTTGAAAGTTGAATATAGATTGACGGGACTCTTTGAGAAAGATAAATCAAAAAGTGAGGTGCGACGGAAAATTCGACGCAGGCGCGCCAGCCAGGCTAATTAAGATAAAGGAAAGCGTGAAAAATTCTCACTGAAAATCTACTGAAAATCGTTTTTTTTTGTGATCGATTTTCCTGTTTTTGAGRTAGGAAAATGAATTCGAACCAGATTTTCTCAATTATTATCAACTGAAAAATGTTAAATTTTGAATAAAGTACTCTGAATTTATAGATCTATCCATTCATGTCACTTGTATCGAAACGATAGTTTTTGAGTAGAAAATTAACAACATGACAGTTTTTTTTAAAAGGAAGTGATTTAAAGGCGGTGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATCCAAGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGATGGCCGCGGCCAGGTGTGAGTTTTTCAGGCCAACTGTCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCGGTGTTTTCTCAGATGTCTTTTAAAGATTTCAAAATGTTTTTGTTAATTTCCTCCCAGGTGTATGAAAAAACCTGACAAAAATCTGAGAAAACACTGAAAATCAATAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGAAAGCGTGAAAAATTC</pcr_primer_p1>
		<pcr_primer_p2>CCATTCAAGAACATTTACCTAGT</pcr_primer_p2>
		<pcr_amplicon_size>822</pcr_amplicon_size>
		<canonical_amplicon>AAGGAAAGCGTGAAAAATTCTCACTGAAAATCTACTGAAAATCGTTTTTTTTTGTGATCGATTTTCCTGTTTTTGAGATAGGAAAATGAATTCGAACCAG</canonical_amplicon>
		<polymorphic_amplicon>AAGGAAAGCGTGAAAAATTCTCACTGAAAATCTACTGAAAATCGTTTTTTTTTGTGATCGATTTTCCTGTTTTTGAGRTAGGAAAATGAATTCGAACCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36474</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>162016</contig_pos>
        <strand></strand>
        <context>aatgaattcg[A/G]accagatttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTTTTGTGATCGATTTTCCTGTTTTTGAGATAGGAAAATGAATTCG</left_flank>
        <right_flank>ACCAGATTTTCTCAATTATTATCAACTGAAAAATGTTAAATTTTGAATAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTGGAAGATCAGAGAATCAAAAAAAGACAAAAGACGAAAACTTTCGGTACAAATGATATCATACATTTTTTCCAGATTTTGATGCTTTATGCCTAGTCGAAAGTATCGCGAATTCCAACAGATCACAAATAATGCTAAACACCTAAATGGGCGATTTATCAATTTTGGAAGGATAGATCAAAGTCAGCATTAATTTATTCAGGCAACTCATAAACTTTCAAAAAATCAACTGTATCATTCTTATATAAATAAACGAAGTTGCGTATCTTTGTCAATTTGCACGATTTTTGAACAGCTTGAAAGTTGAATATAGATTGACGGGACTCTTTGAGAAAGATAAATCAAAAAGTGAGGTGCGACGGAAAATTCGACGCAGGCGCGCCAGCCAGGCTAATTAAGATAAAGGAAAGCGTGAAAAATTCTCACTGAAAATCTACTGAAAATCGTTTTTTTTTGTGATCGATTTTCCTGTTTTTGAGATAGGAAAATGAATTCGAACCAGATTTTCTCAATTATTATCAACTGAAAAATGTTAAATTTTGAATAAAGTACTCTGAATTTATAGATCTATCCATTCATGTCACTTGTATCGAAACGATAGTTTTTGAGTAGAAAATTAACAACATGACAGTTTTTTTTAAAAGGAAGTGATTTAAAGGCGGTGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATCCAAGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGATGGCCGCGGCCAGGTGTGAGTTTTTCAGGCCAACTGTCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCGGTGTTTTCTCAGATGTCTTTTAAAGATTTCAAAATGTTTTTGTTAATTTCCTCCCAGGTGTATGAAAAAACCTGACAAAAATCTGAGAAAACACTGAAAATCAATAAAAATTCGAACTTCGCGCGCTT</canonical>
            <polymorphic>TTCTTGGAAGATCAGAGAATCAAAAAAAGACAAAAGACGAAAACTTTCGGTACAAATGATATCATACATTTTTTCCAGATTTTGATGCTTTATGCCTAGTCGAAAGTATCGCGAATTCCAACAGATCACAAATAATGCTAAACACCTAAATGGGCGATTTATCAATTTTGGAAGGATAGATCAAAGTCAGCATTAATTTATTCAGGCAACTCATAAACTTTCAAAAAATCAACTGTATCATTCTTATATAAATAAACGAAGTTGCGTATCTTTGTCAATTTGCACGATTTTTGAACAGCTTGAAAGTTGAATATAGATTGACGGGACTCTTTGAGAAAGATAAATCAAAAAGTGAGGTGCGACGGAAAATTCGACGCAGGCGCGCCAGCCAGGCTAATTAAGATAAAGGAAAGCGTGAAAAATTCTCACTGAAAATCTACTGAAAATCGTTTTTTTTTGTGATCGATTTTCCTGTTTTTGAGATAGGAAAATGAATTCGRACCAGATTTTCTCAATTATTATCAACTGAAAAATGTTAAATTTTGAATAAAGTACTCTGAATTTATAGATCTATCCATTCATGTCACTTGTATCGAAACGATAGTTTTTGAGTAGAAAATTAACAACATGACAGTTTTTTTTAAAAGGAAGTGATTTAAAGGCGGTGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATCCAAGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGATGGCCGCGGCCAGGTGTGAGTTTTTCAGGCCAACTGTCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCGGTGTTTTCTCAGATGTCTTTTAAAGATTTCAAAATGTTTTTGTTAATTTCCTCCCAGGTGTATGAAAAAACCTGACAAAAATCTGAGAAAACACTGAAAATCAATAAAAATTCGAACTTCGCGCGCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>497 355 132 16</canonical_bands>
                <polymorphic_bands>852 132 16</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>271 179 132 101 96 92 80 34 15</canonical_bands>
                <polymorphic_bands>271 179 132 130 101 92 80 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGAAAGCGTGAAAAATTC</pcr_primer_p1>
		<pcr_primer_p2>CCATTCAAGAACATTTACCTAGT</pcr_primer_p2>
		<pcr_amplicon_size>822</pcr_amplicon_size>
		<canonical_amplicon>AAGGAAAGCGTGAAAAATTCTCACTGAAAATCTACTGAAAATCGTTTTTTTTTGTGATCGATTTTCCTGTTTTTGAGATAGGAAAATGAATTCGAACCAGATTTTCTCAATTATTAT</canonical_amplicon>
		<polymorphic_amplicon>AAGGAAAGCGTGAAAAATTCTCACTGAAAATCTACTGAAAATCGTTTTTTTTTGTGATCGATTTTCCTGTTTTTGAGATAGGAAAATGAATTCGRACCAGATTTTCTCAATTATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36475</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>162062</contig_pos>
        <strand></strand>
        <context>ttaaattttg[A/G]ataaagtact</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGAACCAGATTTTCTCAATTATTATCAACTGAAAAATGTTAAATTTTG</left_flank>
        <right_flank>ATAAAGTACTCTGAATTTATAGATCTATCCATTCATGTCACTTGTATCGA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGTACAAATGATATCATACATTTTTTCCAGATTTTGATGCTTTATGCCTAGTCGAAAGTATCGCGAATTCCAACAGATCACAAATAATGCTAAACACCTAAATGGGCGATTTATCAATTTTGGAAGGATAGATCAAAGTCAGCATTAATTTATTCAGGCAACTCATAAACTTTCAAAAAATCAACTGTATCATTCTTATATAAATAAACGAAGTTGCGTATCTTTGTCAATTTGCACGATTTTTGAACAGCTTGAAAGTTGAATATAGATTGACGGGACTCTTTGAGAAAGATAAATCAAAAAGTGAGGTGCGACGGAAAATTCGACGCAGGCGCGCCAGCCAGGCTAATTAAGATAAAGGAAAGCGTGAAAAATTCTCACTGAAAATCTACTGAAAATCGTTTTTTTTTGTGATCGATTTTCCTGTTTTTGAGATAGGAAAATGAATTCGAACCAGATTTTCTCAATTATTATCAACTGAAAAATGTTAAATTTTGAATAAAGTACTCTGAATTTATAGATCTATCCATTCATGTCACTTGTATCGAAACGATAGTTTTTGAGTAGAAAATTAACAACATGACAGTTTTTTTTAAAAGGAAGTGATTTAAAGGCGGTGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATCCAAGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGATGGCCGCGGCCAGGTGTGAGTTTTTCAGGCCAACTGTCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCGGTGTTTTCTCAGATGTCTTTTAAAGATTTCAAAATGTTTTTGTTAATTTCCTCCCAGGTGTATGAAAAAACCTGACAAAAATCTGAGAAAACACTGAAAATCAATAAAAATTCGAACTTCGCGCGCTTTTACCGGAAGTTGGCCTGGAAAACTCACACCTGGCCGCGGCCATCG</canonical>
            <polymorphic>TCGGTACAAATGATATCATACATTTTTTCCAGATTTTGATGCTTTATGCCTAGTCGAAAGTATCGCGAATTCCAACAGATCACAAATAATGCTAAACACCTAAATGGGCGATTTATCAATTTTGGAAGGATAGATCAAAGTCAGCATTAATTTATTCAGGCAACTCATAAACTTTCAAAAAATCAACTGTATCATTCTTATATAAATAAACGAAGTTGCGTATCTTTGTCAATTTGCACGATTTTTGAACAGCTTGAAAGTTGAATATAGATTGACGGGACTCTTTGAGAAAGATAAATCAAAAAGTGAGGTGCGACGGAAAATTCGACGCAGGCGCGCCAGCCAGGCTAATTAAGATAAAGGAAAGCGTGAAAAATTCTCACTGAAAATCTACTGAAAATCGTTTTTTTTTGTGATCGATTTTCCTGTTTTTGAGATAGGAAAATGAATTCGAACCAGATTTTCTCAATTATTATCAACTGAAAAATGTTAAATTTTGRATAAAGTACTCTGAATTTATAGATCTATCCATTCATGTCACTTGTATCGAAACGATAGTTTTTGAGTAGAAAATTAACAACATGACAGTTTTTTTTAAAAGGAAGTGATTTAAAGGCGGTGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATCCAAGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGATGGCCGCGGCCAGGTGTGAGTTTTTCAGGCCAACTGTCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCGGTGTTTTCTCAGATGTCTTTTAAAGATTTCAAAATGTTTTTGTTAATTTCCTCCCAGGTGTATGAAAAAACCTGACAAAAATCTGAGAAAACACTGAAAATCAATAAAAATTCGAACTTCGCGCGCTTTTACCGGAAGTTGGCCTGGAAAACTCACACCTGGCCGCGGCCATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGAAAGCGTGAAAAATTC</pcr_primer_p1>
		<pcr_primer_p2>CCATTCAAGAACATTTACCTAGT</pcr_primer_p2>
		<pcr_amplicon_size>822</pcr_amplicon_size>
		<canonical_amplicon>AAGGAAAGCGTGAAAAATTCTCACTGAAAATCTACTGAAAATCGTTTTTTTTTGTGATCGATTTTCCTGTTTTTGAGATAGGAAAATGAATTCGAACCAGATTTTCTCAATTATTATCAACTGAAAAATGTTAAATTTTGAATAAAGTACTCTGAATTTATAG</canonical_amplicon>
		<polymorphic_amplicon>AAGGAAAGCGTGAAAAATTCTCACTGAAAATCTACTGAAAATCGTTTTTTTTTGTGATCGATTTTCCTGTTTTTGAGATAGGAAAATGAATTCGAACCAGATTTTCTCAATTATTATCAACTGAAAAATGTTAAATTTTGRATAAAGTACTCTGAATTTATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36476</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>162090</contig_pos>
        <strand></strand>
        <context>tatagatcta[T/C]ccattcatgt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AACTGAAAAATGTTAAATTTTGAATAAAGTACTCTGAATTTATAGATCTA</left_flank>
        <right_flank>CCATTCATGTCACTTGTATCGAAACGATAGTTTTTGAGTAGAAAATTAAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGATTTTGATGCTTTATGCCTAGTCGAAAGTATCGCGAATTCCAACAGATCACAAATAATGCTAAACACCTAAATGGGCGATTTATCAATTTTGGAAGGATAGATCAAAGTCAGCATTAATTTATTCAGGCAACTCATAAACTTTCAAAAAATCAACTGTATCATTCTTATATAAATAAACGAAGTTGCGTATCTTTGTCAATTTGCACGATTTTTGAACAGCTTGAAAGTTGAATATAGATTGACGGGACTCTTTGAGAAAGATAAATCAAAAAGTGAGGTGCGACGGAAAATTCGACGCAGGCGCGCCAGCCAGGCTAATTAAGATAAAGGAAAGCGTGAAAAATTCTCACTGAAAATCTACTGAAAATCGTTTTTTTTTGTGATCGATTTTCCTGTTTTTGAGATAGGAAAATGAATTCGAACCAGATTTTCTCAATTATTATCAACTGAAAAATGTTAAATTTTGAATAAAGTACTCTGAATTTATAGATCTATCCATTCATGTCACTTGTATCGAAACGATAGTTTTTGAGTAGAAAATTAACAACATGACAGTTTTTTTTAAAAGGAAGTGATTTAAAGGCGGTGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATCCAAGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGATGGCCGCGGCCAGGTGTGAGTTTTTCAGGCCAACTGTCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCGGTGTTTTCTCAGATGTCTTTTAAAGATTTCAAAATGTTTTTGTTAATTTCCTCCCAGGTGTATGAAAAAACCTGACAAAAATCTGAGAAAACACTGAAAATCAATAAAAATTCGAACTTCGCGCGCTTTTACCGGAAGTTGGCCTGGAAAACTCACACCTGGCCGCGGCCATCGGTTCCCACTTTGACTTTTCGATGCCGTT</canonical>
            <polymorphic>CCAGATTTTGATGCTTTATGCCTAGTCGAAAGTATCGCGAATTCCAACAGATCACAAATAATGCTAAACACCTAAATGGGCGATTTATCAATTTTGGAAGGATAGATCAAAGTCAGCATTAATTTATTCAGGCAACTCATAAACTTTCAAAAAATCAACTGTATCATTCTTATATAAATAAACGAAGTTGCGTATCTTTGTCAATTTGCACGATTTTTGAACAGCTTGAAAGTTGAATATAGATTGACGGGACTCTTTGAGAAAGATAAATCAAAAAGTGAGGTGCGACGGAAAATTCGACGCAGGCGCGCCAGCCAGGCTAATTAAGATAAAGGAAAGCGTGAAAAATTCTCACTGAAAATCTACTGAAAATCGTTTTTTTTTGTGATCGATTTTCCTGTTTTTGAGATAGGAAAATGAATTCGAACCAGATTTTCTCAATTATTATCAACTGAAAAATGTTAAATTTTGAATAAAGTACTCTGAATTTATAGATCTAYCCATTCATGTCACTTGTATCGAAACGATAGTTTTTGAGTAGAAAATTAACAACATGACAGTTTTTTTTAAAAGGAAGTGATTTAAAGGCGGTGTGCGGTGAAAAATTTTATTGCTTTATTTTGTGCAGAAATCCAAGTAGATCCCCATAAAAATAAAGAAAAAATTCAAAAAAATTCCTTCATTGAGAAAAACGGCATCGAAAAGTCAAAGTGGGAACCGATGGCCGCGGCCAGGTGTGAGTTTTTCAGGCCAACTGTCGGTAAAAGCGCGCGAAATTCGAATTTTTATTGATTTTCGGTGTTTTCTCAGATGTCTTTTAAAGATTTCAAAATGTTTTTGTTAATTTCCTCCCAGGTGTATGAAAAAACCTGACAAAAATCTGAGAAAACACTGAAAATCAATAAAAATTCGAACTTCGCGCGCTTTTACCGGAAGTTGGCCTGGAAAACTCACACCTGGCCGCGGCCATCGGTTCCCACTTTGACTTTTCGATGCCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGAAAGCGTGAAAAATTC</pcr_primer_p1>
		<pcr_primer_p2>CCATTCAAGAACATTTACCTAGT</pcr_primer_p2>
		<pcr_amplicon_size>822</pcr_amplicon_size>
		<canonical_amplicon>AAGGAAAGCGTGAAAAATTCTCACTGAAAATCTACTGAAAATCGTTTTTTTTTGTGATCGATTTTCCTGTTTTTGAGATAGGAAAATGAATTCGAACCAGATTTTCTCAATTATTATCAACTGAAAAATGTTAAATTTTGAATAAAGTACTCTGAATTTATAGATCTATCCATTCATGTCACTTGTATCGA</canonical_amplicon>
		<polymorphic_amplicon>AAGGAAAGCGTGAAAAATTCTCACTGAAAATCTACTGAAAATCGTTTTTTTTTGTGATCGATTTTCCTGTTTTTGAGATAGGAAAATGAATTCGAACCAGATTTTCTCAATTATTATCAACTGAAAAATGTTAAATTTTGAATAAAGTACTCTGAATTTATAGATCTAYCCATTCATGTCACTTGTATCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36477</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>163946</contig_pos>
        <strand>+</strand>
        <context>CTGTCTATGC[C/T]TTTTTTTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTCTCATTCTAATACTCTTCAGGCTCGTTTTTGTGCTCACTGTCTATGC</left_flank>
        <right_flank>TTTTTTTTCGATATTCAACTTTTTCTGTTTCACTATCTTGTTTTTTGCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTTCCGAATTCAAATTTGTTTTCTGTTTCACTATTTCGTCTTCTACTGAAATTAATTCCTGGGATAATACCGAAAGGAAGGAATTTAGATTTTGTGTGACATCTGAAAATTCGAATTTTGGAAATACATTTTTTGACAACGAAAGAATATCCGAAGTTCAGTACAGATTGTTAACTTTTGTTAACTCTCCATTCTTGGTAATTGTGCATGTCACCATTGGAACTTCTTCGAAGTTACGTCATCGTCCAATTTGCACCCATGGAGCACTGACGTAGCTGAAAAGAGCTCTTTTTCGTCTCTCATGTTTCAAAACACAATTTCTTTGGGAATAGTGAAAATACGTATGGAAATTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGATACTTCCTCTTCTTCTTTTTCGCTCTCATTCTAATACTCTTCAGGCTCGTTTTTGTGCTCACTGTCTATGCTTTTTTTTTCGATATTCAACTTTTTCTGTTTCACTATCTTGTTTTTTGCTGATTAAATTTTGAGGGAGGTTTAAAAGATACCGGAAATATTTTGAAAATCTAGAAGTAAAAAATTTTTGAAAACAGATTTTCTAACTTTTATGCCAAATGAGATTTTTCAGTGCTAAAACAAACGAATTGAAACTTAATTTAAAAAAAATCAAAACAATCAGACCATCGCTCAATGACTATTTTCAAATTTAATATTTTTCATTTTGAGAACTGTTTGAAACGTTTAATTTAAAAAAAAAAATCTAAAAATCCTTACAGCAACCCGGAATTTTCAGTTTTCTCAAATATGATTATTTTGAATCAAATTGTATTTCAGAAAAATTGTAGACTTCCTTCAAAATGCTAAAATGAAAAGTTCACGAAACAGAGAAAGGCTTCCGATTTAGGGAGAATTGAAAAACAGTTCTAAAACCTCCTAGAAGCTTTCAGATAGTGAAGAATTTCGGCTTT</canonical>
            <polymorphic>TTCTTTCCGAATTCAAATTTGTTTTCTGTTTCACTATTTCGTCTTCTACTGAAATTAATTCCTGGGATAATACCGAAAGGAAGGAATTTAGATTTTGTGTGACATCTGAAAATTCGAATTTTGGAAATACATTTTTTGACAACGAAAGAATATCCGAAGTTCAGTACAGATTGTTAACTTTTGTTAACTCTCCATTCTTGGTAATTGTGCATGTCACCATTGGAACTTCTTCGAAGTTACGTCATCGTCCAATTTGCACCCATGGAGCACTGACGTAGCTGAAAAGAGCTCTTTTTCGTCTCTCATGTTTCAAAACACAATTTCTTTGGGAATAGTGAAAATACGTATGGAAATTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGATACTTCCTCTTCTTCTTTTTCGCTCTCATTCTAATACTCTTCAGGCTCGTTTTTGTGCTCACTGTCTATGCYTTTTTTTTCGATATTCAACTTTTTCTGTTTCACTATCTTGTTTTTTGCTGATTAAATTTTGAGGGAGGTTTAAAAGATACCGGAAATATTTTGAAAATCTAGAAGTAAAAAATTTTTGAAAACAGATTTTCTAACTTTTATGCCAAATGAGATTTTTCAGTGCTAAAACAAACGAATTGAAACTTAATTTAAAAAAAATCAAAACAATCAGACCATCGCTCAATGACTATTTTCAAATTTAATATTTTTCATTTTGAGAACTGTTTGAAACGTTTAATTTAAAAAAAAAAATCTAAAAATCCTTACAGCAACCCGGAATTTTCAGTTTTCTCAAATATGATTATTTTGAATCAAATTGTATTTCAGAAAAATTGTAGACTTCCTTCAAAATGCTAAAATGAAAAGTTCACGAAACAGAGAAAGGCTTCCGATTTAGGGAGAATTGAAAAACAGTTCTAAAACCTCCTAGAAGCTTTCAGATAGTGAAGAATTTCGGCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTTCGCTCTCATTCTAATA</pcr_primer_p1>
		<pcr_primer_p2>TTAAGTTTCAATTCGTTTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTTCGCTCTCATTCTAATACTCTTCAGGCTCGTTTTTGTGCTCACTGTCTATGCTTTTTTTTTCGATATTCAACTTTTTCTGTTTCACTATCTTGTTTTTTGCTGATTAAATTTTGAGGGAGGTTTAAAAGATACCGGAAATATTTTGAAAATCTAGAAGTAAAAAATTTTTGAAAACAGATTTTCTAACTTTTATGCCAAATGAGATTTTTCAGTGCTAAAACAAACGAATTGAAACTTAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTTCGCTCTCATTCTAATACTCTTCAGGCTCGTTTTTGTGCTCACTGTCTATGCYTTTTTTTTCGATATTCAACTTTTTCTGTTTCACTATCTTGTTTTTTGCTGATTAAATTTTGAGGGAGGTTTAAAAGATACCGGAAATATTTTGAAAATCTAGAAGTAAAAAATTTTTGAAAACAGATTTTCTAACTTTTATGCCAAATGAGATTTTTCAGTGCTAAAACAAACGAATTGAAACTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36478</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>163962</contig_pos>
        <strand></strand>
        <context>TTTCGATATT[C/T]AACTTTTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTCAGGCTCGTTTTTGTGCTCACTGTCTATGCTTTTTTTTTCGATATT</left_flank>
        <right_flank>AACTTTTTCTGTTTCACTATCTTGTTTTTTGCTGATTAAATTTTGAGGGA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGTTTTCTGTTTCACTATTTCGTCTTCTACTGAAATTAATTCCTGGGATAATACCGAAAGGAAGGAATTTAGATTTTGTGTGACATCTGAAAATTCGAATTTTGGAAATACATTTTTTGACAACGAAAGAATATCCGAAGTTCAGTACAGATTGTTAACTTTTGTTAACTCTCCATTCTTGGTAATTGTGCATGTCACCATTGGAACTTCTTCGAAGTTACGTCATCGTCCAATTTGCACCCATGGAGCACTGACGTAGCTGAAAAGAGCTCTTTTTCGTCTCTCATGTTTCAAAACACAATTTCTTTGGGAATAGTGAAAATACGTATGGAAATTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGATACTTCCTCTTCTTCTTTTTCGCTCTCATTCTAATACTCTTCAGGCTCGTTTTTGTGCTCACTGTCTATGCTTTTTTTTTCGATATTCAACTTTTTCTGTTTCACTATCTTGTTTTTTGCTGATTAAATTTTGAGGGAGGTTTAAAAGATACCGGAAATATTTTGAAAATCTAGAAGTAAAAAATTTTTGAAAACAGATTTTCTAACTTTTATGCCAAATGAGATTTTTCAGTGCTAAAACAAACGAATTGAAACTTAATTTAAAAAAAATCAAAACAATCAGACCATCGCTCAATGACTATTTTCAAATTTAATATTTTTCATTTTGAGAACTGTTTGAAACGTTTAATTTAAAAAAAAAAATCTAAAAATCCTTACAGCAACCCGGAATTTTCAGTTTTCTCAAATATGATTATTTTGAATCAAATTGTATTTCAGAAAAATTGTAGACTTCCTTCAAAATGCTAAAATGAAAAGTTCACGAAACAGAGAAAGGCTTCCGATTTAGGGAGAATTGAAAAACAGTTCTAAAACCTCCTAGAAGCTTTCAGATAGTGAAGAATTTCGGCTTTTTCAAAACTTCAAAAT</canonical>
            <polymorphic>ATTTGTTTTCTGTTTCACTATTTCGTCTTCTACTGAAATTAATTCCTGGGATAATACCGAAAGGAAGGAATTTAGATTTTGTGTGACATCTGAAAATTCGAATTTTGGAAATACATTTTTTGACAACGAAAGAATATCCGAAGTTCAGTACAGATTGTTAACTTTTGTTAACTCTCCATTCTTGGTAATTGTGCATGTCACCATTGGAACTTCTTCGAAGTTACGTCATCGTCCAATTTGCACCCATGGAGCACTGACGTAGCTGAAAAGAGCTCTTTTTCGTCTCTCATGTTTCAAAACACAATTTCTTTGGGAATAGTGAAAATACGTATGGAAATTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGATACTTCCTCTTCTTCTTTTTCGCTCTCATTCTAATACTCTTCAGGCTCGTTTTTGTGCTCACTGTCTATGCTTTTTTTTTCGATATTYAACTTTTTCTGTTTCACTATCTTGTTTTTTGCTGATTAAATTTTGAGGGAGGTTTAAAAGATACCGGAAATATTTTGAAAATCTAGAAGTAAAAAATTTTTGAAAACAGATTTTCTAACTTTTATGCCAAATGAGATTTTTCAGTGCTAAAACAAACGAATTGAAACTTAATTTAAAAAAAATCAAAACAATCAGACCATCGCTCAATGACTATTTTCAAATTTAATATTTTTCATTTTGAGAACTGTTTGAAACGTTTAATTTAAAAAAAAAAATCTAAAAATCCTTACAGCAACCCGGAATTTTCAGTTTTCTCAAATATGATTATTTTGAATCAAATTGTATTTCAGAAAAATTGTAGACTTCCTTCAAAATGCTAAAATGAAAAGTTCACGAAACAGAGAAAGGCTTCCGATTTAGGGAGAATTGAAAAACAGTTCTAAAACCTCCTAGAAGCTTTCAGATAGTGAAGAATTTCGGCTTTTTCAAAACTTCAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTTCGCTCTCATTCTAATA</pcr_primer_p1>
		<pcr_primer_p2>TTAAGTTTCAATTCGTTTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTTCGCTCTCATTCTAATACTCTTCAGGCTCGTTTTTGTGCTCACTGTCTATGCTTTTTTTTTCGATATTCAACTTTTTCTGTTTCACTATCTTGTTTTTTGCTGATTAAATTTTGAGGGAGGTTTAAAAGATACCGGAAATATTTTGAAAATCTAGAAGTAAAAAATTTTTGAAAACAGATTTTCTAACTTTTATGCCAAATGAGATTTTTCAGTGCTAAAACAAACGAATTGAAACTTAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTTCGCTCTCATTCTAATACTCTTCAGGCTCGTTTTTGTGCTCACTGTCTATGCTTTTTTTTTCGATATTYAACTTTTTCTGTTTCACTATCTTGTTTTTTGCTGATTAAATTTTGAGGGAGGTTTAAAAGATACCGGAAATATTTTGAAAATCTAGAAGTAAAAAATTTTTGAAAACAGATTTTCTAACTTTTATGCCAAATGAGATTTTTCAGTGCTAAAACAAACGAATTGAAACTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36479</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>189288</contig_pos>
        <strand></strand>
        <context>CAAAAAACAT[G/A]CACKGRATAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATGTCTTATTGACCGGTACTGTAGCTGTAACCGCGTAGCTCAAAAAACAT</left_flank>
        <right_flank>CACGGGATACCGTGGAAAAGTGTAAACATCACAAATTCTACACCGTTACA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACAGGCGAAAGCTGAAAGATTAGAATTGAGACGACAAAAAGAAGAATACAAGAAGCGACGCCGTGAAGGAACACTTTTTCGAAGGCCCCAGAACCCTGACGGCTCCGAAGTGCAGCCAGAAGAAGAAGAGGAGAGTGAATCTGACGAGGAAGAATCCGATGATGATGACGTTGAAGACGAGGAAGAGGTGTCGGAGAATGAGGAAGAGAATGCGGAATTTGCGGATGATGATACTGTAGTCTATACAGTAAGATTTGTGAGAAGAGAGATGAGAAAATTGGCCGAGAATGTTATGAGAAGGGAGAATAACAGAGAGACGCGGATTTGGAAGTTTTATGATATTTACAAGGCGTGAGTGGGATTTTCTATACAGTTTTTGGGGACGGTGTGCAATGGCTACCGTATCCCATTTACAGTACCAGTCAATGAACTGAAAAAGGCGTTTTGTATGTCTTATTGACCGGTACTGTAGCTGTAACCGCGTAGCTCAAAAAACATGCACGGGATACCGTGGAAAAGTGTAAACATCACAAATTCTACACCGTTACACCAAATTGCACTTTCCATGCCTCCACTGTGCCAACAAACTTAGTTTCTTGTAGACTATACTTCCGAAGAATCAACCCAATAATCATGGAACACTTGAACACTTCGGTCACCTATCTCAAACTTATGTGCAGCGTCGAATACATGGTAGTAACGTTCAGATCCACTGAAAATCGTACTGGACCAAGATCAACAGATCCAATCATCAAAATCAGATATGATAAGTCACAAAACACTACTCAAATCTCAAGCGGAGGATTTCAAAAAGTGTTGGCAAATATCATGGATTGCGAAACGGATGCAGCGAGAGATTTGTGTTTTTTATTGTGCGAAACGGCGTTCAACATTGGATGTTTGTTCATTGACATTGAAACAATCGACATGTGTAGTAGACTGGAGCTTGTGGGACTTGACGCCTTCTTGGATTTGTTTGAGAAGACTCTGAGAGATTAT</canonical>
            <polymorphic>CACAGGCGAAAGCTGAAAGATTAGAATTGAGACGACAAAAAGAAGAATACAAGAAGCGACGCCGTGAAGGAACACTTTTTCGAAGGCCCCAGAACCCTGACGGCTCCGAAGTGCAGCCAGAAGAAGAAGAGGAGAGTGAATCTGACGAGGAAGAATCCGATGATGATGACGTTGAAGACGAGGAAGAGGTGTCGGAGAATGAGGAAGAGAATGCGGAATTTGCGGATGATGATACTGTAGTCTATACAGTAAGATTTGTGAGAAGAGAGATGAGAAAATTGGCCGAGAATGTTATGAGAAGGGAGAATAACAGAGAGACGCGGATTTGGAAGTTTTATGATATTTACAAGGCGTGAGTGGGATTTTCTATACAGTTTTTGGGGACGGTGTGCAATGGCTACCGTATCCCATTTACAGTACCAGTCAATGAACTGAAAAAGGCGTTTTGTATGTCTTATTGACCGGTACTGTAGCTGTAACCGCGTAGCTCAAAAAACATRCACGGGATACCGTGGAAAAGTGTAAACATCACAAATTCTACACCGTTACACCAAATTGCACTTTCCATGCCTCCACTGTGCCAACAAACTTAGTTTCTTGTAGACTATACTTCCGAAGAATCAACCCAATAATCATGGAACACTTGAACACTTCGGTCACCTATCTCAAACTTATGTGCAGCGTCGAATACATGGTAGTAACGTTCAGATCCACTGAAAATCGTACTGGACCAAGATCAACAGATCCAATCATCAAAATCAGATATGATAAGTCACAAAACACTACTCAAATCTCAAGCGGAGGATTTCAAAAAGTGTTGGCAAATATCATGGATTGCGAAACGGATGCAGCGAGAGATTTGTGTTTTTTATTGTGCGAAACGGCGTTCAACATTGGATGTTTGTTCATTGACATTGAAACAATCGACATGTGTAGTAGACTGGAGCTTGTGGGACTTGACGCCTTCTTGGATTTGTTTGAGAAGACTCTGAGAGATTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>500 431 69</canonical_bands>
                <polymorphic_bands>931 69</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>497 138 99 72 69 68 57</canonical_bands>
                <polymorphic_bands>566 138 99 72 68 57</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>278 170 152 120 113 109 58</canonical_bands>
                <polymorphic_bands>278 170 167 152 120 113</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATCCCATTTACAGTACCAGTC</pcr_primer_p1>
		<pcr_primer_p2>AGTGTTCAAGTGTTCCATGATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTATCCCATTTACAGTACCAGTCAATGAACTGAAAAAGGCGTTTTGTATGTCTTATTGACCGGTACTGTAGCTGTAACCGCGTAGCTCAAAAAACATGCACGGGATACCGTGGAAAAGTGTAAACATCACAAATTCTACACCGTTACACCAAATTGCACTTTCCATGCCTCCACTGTGCCAACAAACTTAGTTTCTTGTAGACTATACTTCCGAAGAATCAACCCAATAATCATGGAACACTTGAACACT</canonical_amplicon>
		<polymorphic_amplicon>GTATCCCATTTACAGTACCAGTCAATGAACTGAAAAAGGCGTTTTGTATGTCTTATTGACCGGTACTGTAGCTGTAACCGCGTAGCTCAAAAAACATRCACGGGATACCGTGGAAAAGTGTAAACATCACAAATTCTACACCGTTACACCAAATTGCACTTTCCATGCCTCCACTGTGCCAACAAACTTAGTTTCTTGTAGACTATACTTCCGAAGAATCAACCCAATAATCATGGAACACTTGAACACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36480</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>189292</contig_pos>
        <strand></strand>
        <context>AAACATRCAC[G/T]GRATACCGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTATTGACCGGTACTGTAGCTGTAACCGCGTAGCTCAAAAAACATGCAC</left_flank>
        <right_flank>GGATACCGTGGAAAAGTGTAAACATCACAAATTCTACACCGTTACACCAA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCGAAAGCTGAAAGATTAGAATTGAGACGACAAAAAGAAGAATACAAGAAGCGACGCCGTGAAGGAACACTTTTTCGAAGGCCCCAGAACCCTGACGGCTCCGAAGTGCAGCCAGAAGAAGAAGAGGAGAGTGAATCTGACGAGGAAGAATCCGATGATGATGACGTTGAAGACGAGGAAGAGGTGTCGGAGAATGAGGAAGAGAATGCGGAATTTGCGGATGATGATACTGTAGTCTATACAGTAAGATTTGTGAGAAGAGAGATGAGAAAATTGGCCGAGAATGTTATGAGAAGGGAGAATAACAGAGAGACGCGGATTTGGAAGTTTTATGATATTTACAAGGCGTGAGTGGGATTTTCTATACAGTTTTTGGGGACGGTGTGCAATGGCTACCGTATCCCATTTACAGTACCAGTCAATGAACTGAAAAAGGCGTTTTGTATGTCTTATTGACCGGTACTGTAGCTGTAACCGCGTAGCTCAAAAAACATGCACGGGATACCGTGGAAAAGTGTAAACATCACAAATTCTACACCGTTACACCAAATTGCACTTTCCATGCCTCCACTGTGCCAACAAACTTAGTTTCTTGTAGACTATACTTCCGAAGAATCAACCCAATAATCATGGAACACTTGAACACTTCGGTCACCTATCTCAAACTTATGTGCAGCGTCGAATACATGGTAGTAACGTTCAGATCCACTGAAAATCGTACTGGACCAAGATCAACAGATCCAATCATCAAAATCAGATATGATAAGTCACAAAACACTACTCAAATCTCAAGCGGAGGATTTCAAAAAGTGTTGGCAAATATCATGGATTGCGAAACGGATGCAGCGAGAGATTTGTGTTTTTTATTGTGCGAAACGGCGTTCAACATTGGATGTTTGTTCATTGACATTGAAACAATCGACATGTGTAGTAGACTGGAGCTTGTGGGACTTGACGCCTTCTTGGATTTGTTTGAGAAGACTCTGAGAGATTATCATT</canonical>
            <polymorphic>GGCGAAAGCTGAAAGATTAGAATTGAGACGACAAAAAGAAGAATACAAGAAGCGACGCCGTGAAGGAACACTTTTTCGAAGGCCCCAGAACCCTGACGGCTCCGAAGTGCAGCCAGAAGAAGAAGAGGAGAGTGAATCTGACGAGGAAGAATCCGATGATGATGACGTTGAAGACGAGGAAGAGGTGTCGGAGAATGAGGAAGAGAATGCGGAATTTGCGGATGATGATACTGTAGTCTATACAGTAAGATTTGTGAGAAGAGAGATGAGAAAATTGGCCGAGAATGTTATGAGAAGGGAGAATAACAGAGAGACGCGGATTTGGAAGTTTTATGATATTTACAAGGCGTGAGTGGGATTTTCTATACAGTTTTTGGGGACGGTGTGCAATGGCTACCGTATCCCATTTACAGTACCAGTCAATGAACTGAAAAAGGCGTTTTGTATGTCTTATTGACCGGTACTGTAGCTGTAACCGCGTAGCTCAAAAAACATGCACKGGATACCGTGGAAAAGTGTAAACATCACAAATTCTACACCGTTACACCAAATTGCACTTTCCATGCCTCCACTGTGCCAACAAACTTAGTTTCTTGTAGACTATACTTCCGAAGAATCAACCCAATAATCATGGAACACTTGAACACTTCGGTCACCTATCTCAAACTTATGTGCAGCGTCGAATACATGGTAGTAACGTTCAGATCCACTGAAAATCGTACTGGACCAAGATCAACAGATCCAATCATCAAAATCAGATATGATAAGTCACAAAACACTACTCAAATCTCAAGCGGAGGATTTCAAAAAGTGTTGGCAAATATCATGGATTGCGAAACGGATGCAGCGAGAGATTTGTGTTTTTTATTGTGCGAAACGGCGTTCAACATTGGATGTTTGTTCATTGACATTGAAACAATCGACATGTGTAGTAGACTGGAGCTTGTGGGACTTGACGCCTTCTTGGATTTGTTTGAGAAGACTCTGAGAGATTATCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATCCCATTTACAGTACCAGTC</pcr_primer_p1>
		<pcr_primer_p2>AGTGTTCAAGTGTTCCATGATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTATCCCATTTACAGTACCAGTCAATGAACTGAAAAAGGCGTTTTGTATGTCTTATTGACCGGTACTGTAGCTGTAACCGCGTAGCTCAAAAAACATGCACGGGATACCGTGGAAAAGTGTAAACATCACAAATTCTACACCGTTACACCAAATTGCACTTTCCATGCCTCCACTGTGCCAACAAACTTAGTTTCTTGTAGACTATACTTCCGAAGAATCAACCCAATAATCATGGAACACTTGAACACT</canonical_amplicon>
		<polymorphic_amplicon>GTATCCCATTTACAGTACCAGTCAATGAACTGAAAAAGGCGTTTTGTATGTCTTATTGACCGGTACTGTAGCTGTAACCGCGTAGCTCAAAAAACATGCACKGGATACCGTGGAAAAGTGTAAACATCACAAATTCTACACCGTTACACCAAATTGCACTTTCCATGCCTCCACTGTGCCAACAAACTTAGTTTCTTGTAGACTATACTTCCGAAGAATCAACCCAATAATCATGGAACACTTGAACACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36481</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>189294</contig_pos>
        <strand></strand>
        <context>ACATRCACKG[G/A]ATACCGTGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TATTGACCGGTACTGTAGCTGTAACCGCGTAGCTCAAAAAACATGCACGG</left_flank>
        <right_flank>ATACCGTGGAAAAGTGTAAACATCACAAATTCTACACCGTTACACCAAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAAAGCTGAAAGATTAGAATTGAGACGACAAAAAGAAGAATACAAGAAGCGACGCCGTGAAGGAACACTTTTTCGAAGGCCCCAGAACCCTGACGGCTCCGAAGTGCAGCCAGAAGAAGAAGAGGAGAGTGAATCTGACGAGGAAGAATCCGATGATGATGACGTTGAAGACGAGGAAGAGGTGTCGGAGAATGAGGAAGAGAATGCGGAATTTGCGGATGATGATACTGTAGTCTATACAGTAAGATTTGTGAGAAGAGAGATGAGAAAATTGGCCGAGAATGTTATGAGAAGGGAGAATAACAGAGAGACGCGGATTTGGAAGTTTTATGATATTTACAAGGCGTGAGTGGGATTTTCTATACAGTTTTTGGGGACGGTGTGCAATGGCTACCGTATCCCATTTACAGTACCAGTCAATGAACTGAAAAAGGCGTTTTGTATGTCTTATTGACCGGTACTGTAGCTGTAACCGCGTAGCTCAAAAAACATGCACGGGATACCGTGGAAAAGTGTAAACATCACAAATTCTACACCGTTACACCAAATTGCACTTTCCATGCCTCCACTGTGCCAACAAACTTAGTTTCTTGTAGACTATACTTCCGAAGAATCAACCCAATAATCATGGAACACTTGAACACTTCGGTCACCTATCTCAAACTTATGTGCAGCGTCGAATACATGGTAGTAACGTTCAGATCCACTGAAAATCGTACTGGACCAAGATCAACAGATCCAATCATCAAAATCAGATATGATAAGTCACAAAACACTACTCAAATCTCAAGCGGAGGATTTCAAAAAGTGTTGGCAAATATCATGGATTGCGAAACGGATGCAGCGAGAGATTTGTGTTTTTTATTGTGCGAAACGGCGTTCAACATTGGATGTTTGTTCATTGACATTGAAACAATCGACATGTGTAGTAGACTGGAGCTTGTGGGACTTGACGCCTTCTTGGATTTGTTTGAGAAGACTCTGAGAGATTATCATTTG</canonical>
            <polymorphic>CGAAAGCTGAAAGATTAGAATTGAGACGACAAAAAGAAGAATACAAGAAGCGACGCCGTGAAGGAACACTTTTTCGAAGGCCCCAGAACCCTGACGGCTCCGAAGTGCAGCCAGAAGAAGAAGAGGAGAGTGAATCTGACGAGGAAGAATCCGATGATGATGACGTTGAAGACGAGGAAGAGGTGTCGGAGAATGAGGAAGAGAATGCGGAATTTGCGGATGATGATACTGTAGTCTATACAGTAAGATTTGTGAGAAGAGAGATGAGAAAATTGGCCGAGAATGTTATGAGAAGGGAGAATAACAGAGAGACGCGGATTTGGAAGTTTTATGATATTTACAAGGCGTGAGTGGGATTTTCTATACAGTTTTTGGGGACGGTGTGCAATGGCTACCGTATCCCATTTACAGTACCAGTCAATGAACTGAAAAAGGCGTTTTGTATGTCTTATTGACCGGTACTGTAGCTGTAACCGCGTAGCTCAAAAAACATGCACGGRATACCGTGGAAAAGTGTAAACATCACAAATTCTACACCGTTACACCAAATTGCACTTTCCATGCCTCCACTGTGCCAACAAACTTAGTTTCTTGTAGACTATACTTCCGAAGAATCAACCCAATAATCATGGAACACTTGAACACTTCGGTCACCTATCTCAAACTTATGTGCAGCGTCGAATACATGGTAGTAACGTTCAGATCCACTGAAAATCGTACTGGACCAAGATCAACAGATCCAATCATCAAAATCAGATATGATAAGTCACAAAACACTACTCAAATCTCAAGCGGAGGATTTCAAAAAGTGTTGGCAAATATCATGGATTGCGAAACGGATGCAGCGAGAGATTTGTGTTTTTTATTGTGCGAAACGGCGTTCAACATTGGATGTTTGTTCATTGACATTGAAACAATCGACATGTGTAGTAGACTGGAGCTTGTGGGACTTGACGCCTTCTTGGATTTGTTTGAGAAGACTCTGAGAGATTATCATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATCCCATTTACAGTACCAGTC</pcr_primer_p1>
		<pcr_primer_p2>AGTGTTCAAGTGTTCCATGATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTATCCCATTTACAGTACCAGTCAATGAACTGAAAAAGGCGTTTTGTATGTCTTATTGACCGGTACTGTAGCTGTAACCGCGTAGCTCAAAAAACATGCACGGGATACCGTGGAAAAGTGTAAACATCACAAATTCTACACCGTTACACCAAATTGCACTTTCCATGCCTCCACTGTGCCAACAAACTTAGTTTCTTGTAGACTATACTTCCGAAGAATCAACCCAATAATCATGGAACACTTGAACACT</canonical_amplicon>
		<polymorphic_amplicon>GTATCCCATTTACAGTACCAGTCAATGAACTGAAAAAGGCGTTTTGTATGTCTTATTGACCGGTACTGTAGCTGTAACCGCGTAGCTCAAAAAACATGCACGGRATACCGTGGAAAAGTGTAAACATCACAAATTCTACACCGTTACACCAAATTGCACTTTCCATGCCTCCACTGTGCCAACAAACTTAGTTTCTTGTAGACTATACTTCCGAAGAATCAACCCAATAATCATGGAACACTTGAACACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36482</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>189349</contig_pos>
        <strand></strand>
        <context>CCAAATTGCA[C/A]TTTCCWTGCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CGTGGAAAAGTGTAAACATCACAAATTCTACACCGTTACACCAAATTGCA</left_flank>
        <right_flank>TTTCCATGCCTCCACTGTGCCAACAAACTTAGTTTCTTGTAGACTATACT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGTGAAGGAACACTTTTTCGAAGGCCCCAGAACCCTGACGGCTCCGAAGTGCAGCCAGAAGAAGAAGAGGAGAGTGAATCTGACGAGGAAGAATCCGATGATGATGACGTTGAAGACGAGGAAGAGGTGTCGGAGAATGAGGAAGAGAATGCGGAATTTGCGGATGATGATACTGTAGTCTATACAGTAAGATTTGTGAGAAGAGAGATGAGAAAATTGGCCGAGAATGTTATGAGAAGGGAGAATAACAGAGAGACGCGGATTTGGAAGTTTTATGATATTTACAAGGCGTGAGTGGGATTTTCTATACAGTTTTTGGGGACGGTGTGCAATGGCTACCGTATCCCATTTACAGTACCAGTCAATGAACTGAAAAAGGCGTTTTGTATGTCTTATTGACCGGTACTGTAGCTGTAACCGCGTAGCTCAAAAAACATGCACGGGATACCGTGGAAAAGTGTAAACATCACAAATTCTACACCGTTACACCAAATTGCACTTTCCATGCCTCCACTGTGCCAACAAACTTAGTTTCTTGTAGACTATACTTCCGAAGAATCAACCCAATAATCATGGAACACTTGAACACTTCGGTCACCTATCTCAAACTTATGTGCAGCGTCGAATACATGGTAGTAACGTTCAGATCCACTGAAAATCGTACTGGACCAAGATCAACAGATCCAATCATCAAAATCAGATATGATAAGTCACAAAACACTACTCAAATCTCAAGCGGAGGATTTCAAAAAGTGTTGGCAAATATCATGGATTGCGAAACGGATGCAGCGAGAGATTTGTGTTTTTTATTGTGCGAAACGGCGTTCAACATTGGATGTTTGTTCATTGACATTGAAACAATCGACATGTGTAGTAGACTGGAGCTTGTGGGACTTGACGCCTTCTTGGATTTGTTTGAGAAGACTCTGAGAGATTATCATTTGACTTTGAGAGTTGTGGAATTGAGAATAAAGCTTTTCGGATTCGATCGCTCCTTGA</canonical>
            <polymorphic>CCGTGAAGGAACACTTTTTCGAAGGCCCCAGAACCCTGACGGCTCCGAAGTGCAGCCAGAAGAAGAAGAGGAGAGTGAATCTGACGAGGAAGAATCCGATGATGATGACGTTGAAGACGAGGAAGAGGTGTCGGAGAATGAGGAAGAGAATGCGGAATTTGCGGATGATGATACTGTAGTCTATACAGTAAGATTTGTGAGAAGAGAGATGAGAAAATTGGCCGAGAATGTTATGAGAAGGGAGAATAACAGAGAGACGCGGATTTGGAAGTTTTATGATATTTACAAGGCGTGAGTGGGATTTTCTATACAGTTTTTGGGGACGGTGTGCAATGGCTACCGTATCCCATTTACAGTACCAGTCAATGAACTGAAAAAGGCGTTTTGTATGTCTTATTGACCGGTACTGTAGCTGTAACCGCGTAGCTCAAAAAACATGCACGGGATACCGTGGAAAAGTGTAAACATCACAAATTCTACACCGTTACACCAAATTGCAMTTTCCATGCCTCCACTGTGCCAACAAACTTAGTTTCTTGTAGACTATACTTCCGAAGAATCAACCCAATAATCATGGAACACTTGAACACTTCGGTCACCTATCTCAAACTTATGTGCAGCGTCGAATACATGGTAGTAACGTTCAGATCCACTGAAAATCGTACTGGACCAAGATCAACAGATCCAATCATCAAAATCAGATATGATAAGTCACAAAACACTACTCAAATCTCAAGCGGAGGATTTCAAAAAGTGTTGGCAAATATCATGGATTGCGAAACGGATGCAGCGAGAGATTTGTGTTTTTTATTGTGCGAAACGGCGTTCAACATTGGATGTTTGTTCATTGACATTGAAACAATCGACATGTGTAGTAGACTGGAGCTTGTGGGACTTGACGCCTTCTTGGATTTGTTTGAGAAGACTCTGAGAGATTATCATTTGACTTTGAGAGTTGTGGAATTGAGAATAAAGCTTTTCGGATTCGATCGCTCCTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>111 95 69 69 62 62 57 53 47 40 39 35 35 30 25 19 19 15 12 12 11 10 9 9 8 8 8 8 7 5 5 4 2</canonical_bands>
                <polymorphic_bands>111 95 69 69 62 62 57 53 47 40 39 35 35 30 25 25 19 19 12 12 11 9 9 8 8 8 8 7 5 5 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATCCCATTTACAGTACCAGTC</pcr_primer_p1>
		<pcr_primer_p2>AGTGTTCAAGTGTTCCATGATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTATCCCATTTACAGTACCAGTCAATGAACTGAAAAAGGCGTTTTGTATGTCTTATTGACCGGTACTGTAGCTGTAACCGCGTAGCTCAAAAAACATGCACGGGATACCGTGGAAAAGTGTAAACATCACAAATTCTACACCGTTACACCAAATTGCACTTTCCATGCCTCCACTGTGCCAACAAACTTAGTTTCTTGTAGACTATACTTCCGAAGAATCAACCCAATAATCATGGAACACTTGAACACT</canonical_amplicon>
		<polymorphic_amplicon>GTATCCCATTTACAGTACCAGTCAATGAACTGAAAAAGGCGTTTTGTATGTCTTATTGACCGGTACTGTAGCTGTAACCGCGTAGCTCAAAAAACATGCACGGGATACCGTGGAAAAGTGTAAACATCACAAATTCTACACCGTTACACCAAATTGCAMTTTCCATGCCTCCACTGTGCCAACAAACTTAGTTTCTTGTAGACTATACTTCCGAAGAATCAACCCAATAATCATGGAACACTTGAACACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36483</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>189355</contig_pos>
        <strand></strand>
        <context>TGCAMTTTCC[A/T]TGCCTCCACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAGTGTAAACATCACAAATTCTACACCGTTACACCAAATTGCACTTTCC</left_flank>
        <right_flank>TGCCTCCACTGTGCCAACAAACTTAGTTTCTTGTAGACTATACTTCCGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAACACTTTTTCGAAGGCCCCAGAACCCTGACGGCTCCGAAGTGCAGCCAGAAGAAGAAGAGGAGAGTGAATCTGACGAGGAAGAATCCGATGATGATGACGTTGAAGACGAGGAAGAGGTGTCGGAGAATGAGGAAGAGAATGCGGAATTTGCGGATGATGATACTGTAGTCTATACAGTAAGATTTGTGAGAAGAGAGATGAGAAAATTGGCCGAGAATGTTATGAGAAGGGAGAATAACAGAGAGACGCGGATTTGGAAGTTTTATGATATTTACAAGGCGTGAGTGGGATTTTCTATACAGTTTTTGGGGACGGTGTGCAATGGCTACCGTATCCCATTTACAGTACCAGTCAATGAACTGAAAAAGGCGTTTTGTATGTCTTATTGACCGGTACTGTAGCTGTAACCGCGTAGCTCAAAAAACATGCACGGGATACCGTGGAAAAGTGTAAACATCACAAATTCTACACCGTTACACCAAATTGCACTTTCCATGCCTCCACTGTGCCAACAAACTTAGTTTCTTGTAGACTATACTTCCGAAGAATCAACCCAATAATCATGGAACACTTGAACACTTCGGTCACCTATCTCAAACTTATGTGCAGCGTCGAATACATGGTAGTAACGTTCAGATCCACTGAAAATCGTACTGGACCAAGATCAACAGATCCAATCATCAAAATCAGATATGATAAGTCACAAAACACTACTCAAATCTCAAGCGGAGGATTTCAAAAAGTGTTGGCAAATATCATGGATTGCGAAACGGATGCAGCGAGAGATTTGTGTTTTTTATTGTGCGAAACGGCGTTCAACATTGGATGTTTGTTCATTGACATTGAAACAATCGACATGTGTAGTAGACTGGAGCTTGTGGGACTTGACGCCTTCTTGGATTTGTTTGAGAAGACTCTGAGAGATTATCATTTGACTTTGAGAGTTGTGGAATTGAGAATAAAGCTTTTCGGATTCGATCGCTCCTTGATCCACG</canonical>
            <polymorphic>AGGAACACTTTTTCGAAGGCCCCAGAACCCTGACGGCTCCGAAGTGCAGCCAGAAGAAGAAGAGGAGAGTGAATCTGACGAGGAAGAATCCGATGATGATGACGTTGAAGACGAGGAAGAGGTGTCGGAGAATGAGGAAGAGAATGCGGAATTTGCGGATGATGATACTGTAGTCTATACAGTAAGATTTGTGAGAAGAGAGATGAGAAAATTGGCCGAGAATGTTATGAGAAGGGAGAATAACAGAGAGACGCGGATTTGGAAGTTTTATGATATTTACAAGGCGTGAGTGGGATTTTCTATACAGTTTTTGGGGACGGTGTGCAATGGCTACCGTATCCCATTTACAGTACCAGTCAATGAACTGAAAAAGGCGTTTTGTATGTCTTATTGACCGGTACTGTAGCTGTAACCGCGTAGCTCAAAAAACATGCACGGGATACCGTGGAAAAGTGTAAACATCACAAATTCTACACCGTTACACCAAATTGCACTTTCCWTGCCTCCACTGTGCCAACAAACTTAGTTTCTTGTAGACTATACTTCCGAAGAATCAACCCAATAATCATGGAACACTTGAACACTTCGGTCACCTATCTCAAACTTATGTGCAGCGTCGAATACATGGTAGTAACGTTCAGATCCACTGAAAATCGTACTGGACCAAGATCAACAGATCCAATCATCAAAATCAGATATGATAAGTCACAAAACACTACTCAAATCTCAAGCGGAGGATTTCAAAAAGTGTTGGCAAATATCATGGATTGCGAAACGGATGCAGCGAGAGATTTGTGTTTTTTATTGTGCGAAACGGCGTTCAACATTGGATGTTTGTTCATTGACATTGAAACAATCGACATGTGTAGTAGACTGGAGCTTGTGGGACTTGACGCCTTCTTGGATTTGTTTGAGAAGACTCTGAGAGATTATCATTTGACTTTGAGAGTTGTGGAATTGAGAATAAAGCTTTTCGGATTCGATCGCTCCTTGATCCACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>430 139 138 99 69 68 57</canonical_bands>
                <polymorphic_bands>430 139 138 137 99 57</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATCCCATTTACAGTACCAGTC</pcr_primer_p1>
		<pcr_primer_p2>AGTGTTCAAGTGTTCCATGATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTATCCCATTTACAGTACCAGTCAATGAACTGAAAAAGGCGTTTTGTATGTCTTATTGACCGGTACTGTAGCTGTAACCGCGTAGCTCAAAAAACATGCACGGGATACCGTGGAAAAGTGTAAACATCACAAATTCTACACCGTTACACCAAATTGCACTTTCCATGCCTCCACTGTGCCAACAAACTTAGTTTCTTGTAGACTATACTTCCGAAGAATCAACCCAATAATCATGGAACACTTGAACACT</canonical_amplicon>
		<polymorphic_amplicon>GTATCCCATTTACAGTACCAGTCAATGAACTGAAAAAGGCGTTTTGTATGTCTTATTGACCGGTACTGTAGCTGTAACCGCGTAGCTCAAAAAACATGCACGGGATACCGTGGAAAAGTGTAAACATCACAAATTCTACACCGTTACACCAAATTGCACTTTCCWTGCCTCCACTGTGCCAACAAACTTAGTTTCTTGTAGACTATACTTCCGAAGAATCAACCCAATAATCATGGAACACTTGAACACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36484</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>198045</contig_pos>
        <strand>+</strand>
        <context>TAATGTAWTT[C/T]TAATTGAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTGTTTTGAGTAGTTTTAAAGTAAAGGTCATTTTGAAAATAATGTAATT</left_flank>
        <right_flank>TAATTGAATTTTCAAACTTCAAAAATTCTCACGAAAATTAAATATTCTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTATGACTATCCTTTAATTCTTTCACACAATCAGCCATCATTGCATCTTTATCCTCTAGTTTTCTCTCCAAACGATTCACTTCGTTTCCACGTTTTCGGCATTCGTCTTTCTGGAAAACATTAGTACTGTTTTTAATATCCCATATAAGATGTCATAAACGTTTGGTATAATTGTATAGATTTTGAATTTTCTGTTTAAAATCAAATACAGCATGGATGAAATTTTCAAAAGTTCATCAGCAAAGTTTTAATCTAATTCTAACAAGCTTTTTTCAACTTTATAATACTTGTCGTATTATATCTTCGTTCCTGTTAAAGATATCAAAATCGGTCAACAGAAATATTTACTAGTATTTTATCAATTTGATACTTTTCACAGGAACCGAGATAAATATGGCCTAATTGTAAGTTGAAAGGCCCTCATGTTGCAAACTCCAAGGTTTTTTTTGCTGTTTTGAGTAGTTTTAAAGTAAAGGTCATTTTGAAAATAATGTAATTCTAATTGAATTTTCAAACTTCAAAAATTCTCACGAAAATTAAATATTCTAGTCTTTGATTTGCAGCAAACTTTTACGGATTTCAGAAGTTGCGAAGCTCAAAAAAGCGAAAAAATACTGTAGCAGTTCTATTATGTGTAGTTCTTTTCGTCACAGTTATATTCTGCACTTTTTATTCTCAAGTCCGGCTTTCGAATCAAAGTTGAAAATCCTTCAGATTCCAAATCAATTATATTCTTCCAGAAGAAACAGTAAAAAAACACTCACCAACTCATCAATTTTCTTCGCCTGCTTCTGAATAATCTCCTTGGCCGTCGTCAATTCCTCATTCAATTTCTCCTTTTCCCTCTCAATTTTCCTCGTCGAATTCCGTTCGTTCAGTGCGATTTGATCGAAACGAGCTATTTTTTCCTGAATTTTGATTTTTATAAATTTCCATTGACAAGAAGCTTACATTCAATTCGGTGATCAGTTTTTGCATATCTCCAATTGTGTTACTTTG</canonical>
            <polymorphic>CTTATGACTATCCTTTAATTCTTTCACACAATCAGCCATCATTGCATCTTTATCCTCTAGTTTTCTCTCCAAACGATTCACTTCGTTTCCACGTTTTCGGCATTCGTCTTTCTGGAAAACATTAGTACTGTTTTTAATATCCCATATAAGATGTCATAAACGTTTGGTATAATTGTATAGATTTTGAATTTTCTGTTTAAAATCAAATACAGCATGGATGAAATTTTCAAAAGTTCATCAGCAAAGTTTTAATCTAATTCTAACAAGCTTTTTTCAACTTTATAATACTTGTCGTATTATATCTTCGTTCCTGTTAAAGATATCAAAATCGGTCAACAGAAATATTTACTAGTATTTTATCAATTTGATACTTTTCACAGGAACCGAGATAAATATGGCCTAATTGTAAGTTGAAAGGCCCTCATGTTGCAAACTCCAAGGTTTTTTTTGCTGTTTTGAGTAGTTTTAAAGTAAAGGTCATTTTGAAAATAATGTAATTYTAATTGAATTTTCAAACTTCAAAAATTCTCACGAAAATTAAATATTCTAGTCTTTGATTTGCAGCAAACTTTTACGGATTTCAGAAGTTGCGAAGCTCAAAAAAGCGAAAAAATACTGTAGCAGTTCTATTATGTGTAGTTCTTTTCGTCACAGTTATATTCTGCACTTTTTATTCTCAAGTCCGGCTTTCGAATCAAAGTTGAAAATCCTTCAGATTCCAAATCAATTATATTCTTCCAGAAGAAACAGTAAAAAAACACTCACCAACTCATCAATTTTCTTCGCCTGCTTCTGAATAATCTCCTTGGCCGTCGTCAATTCCTCATTCAATTTCTCCTTTTCCCTCTCAATTTTCCTCGTCGAATTCCGTTCGTTCAGTGCGATTTGATCGAAACGAGCTATTTTTTCCTGAATTTTGATTTTTATAAATTTCCATTGACAAGAAGCTTACATTCAATTCGGTGATCAGTTTTTGCATATCTCCAATTGTGTTACTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGCTGTTTTGAGTAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTGAGAATAAAAAGTGCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGCTGTTTTGAGTAGTTTTAAAGTAAAGGTCATTTTGAAAATAATGTAATTCTAATTGAATTTTCAAACTTCAAAAATTCTCACGAAAATTAAATATTCTAGTCTTTGATTTGCAGCAAACTTTTACGGATTTCAGAAGTTGCGAAGCTCAAAAAAGCGAAAAAATACTGTAGCAGTTCTATTATGTGTAGTTCTTTTCGTCACAGTTATATTCTGCACTTTTTATTCTCAAG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGCTGTTTTGAGTAGTTTTAAAGTAAAGGTCATTTTGAAAATAATGTAATTYTAATTGAATTTTCAAACTTCAAAAATTCTCACGAAAATTAAATATTCTAGTCTTTGATTTGCAGCAAACTTTTACGGATTTCAGAAGTTGCGAAGCTCAAAAAAGCGAAAAAATACTGTAGCAGTTCTATTATGTGTAGTTCTTTTCGTCACAGTTATATTCTGCACTTTTTATTCTCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36485</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>200059</contig_pos>
        <strand>+</strand>
        <context>AAGCTCACCT[C/T]TCTTCCCCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGTAATAAATCATTAAGACCATTTTCTTGTGAAAGTATAAGCTCACCT</left_flank>
        <right_flank>TCTTCCCCTCTTCTCCACTTCTTCCATCTCCTTTTGAACTTTGATTTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCATTCTGCTCCATTTCTTCCATCGTTTTTCGAAACTCGCGCTCTTTTTCGAGAAGCTTCTGCAAGTATCAATTCATTAATTACATTCACCATTTTGAAAAAAAATACGTGAGTTTTGAAACGGTGGACATTTTTACTGTTTCTAGTAGTTGGTTTATTGCGGATGAAGTTATTGGAGGTGTTTATGCGACGATTCATGCTATTATGCTTGTTTGAGAAAAAAAAAGGTTAGAGAGTATTTTTTGCATTCTAAATACGGTAGCGATATCGAAGCGGAGAGCCTAAATAGCACACATAAGGTGGAGACGCAGACACTTTTCCTCTGCGTCTCAGCCTTTTATTTCTCAGACAAGCATAGTAGAACTCATACTCTCACTTCAAGGAAAACTTTGAAACTTCGCGTTCAAAAGTCTCACAAACAGCAGAATAATTCTACCAGTTATGCGAAATTGTAATAAATCATTAAGACCATTTTCTTGTGAAAGTATAAGCTCACCTTTCTTCCCCTCTTCTCCACTTCTTCCATCTCCTTTTGAACTTTGATTTTTTCGGTTTTCTCGCGATCCAAAAGCTGAAATTTTGAGTGTATATATTCTGTTTCACATAAATGATATTAAATTGGAAAAGTTATTACTTTTTACAGATTTATAGTTCTCACAGTGGAAAATAATTACAACTAACTTGTAAGTTCCCAATTTTCTCATGCGATACATGAAAAGCCAGAAACATTTTTTCTTGAATACAAATGTTTTGTTTTTTTTTCTTTCTTTCTATGATGAAAAATCGTAATCACTGAATTTTTAAAAATTCAAATAAATCCGAACAATTAATAAATCAGCATCTTTAAAGAAGCCTATACTCCAACACTTCCAGCTCAAATATCTCAATTTTTGTAAAAGACATCAAAAAACTTTCAACTGGTAAGATGCTGGTGATATTATGATAAACATTTTATCAGTAAATATGTTTCAATATTTCCCATAAAATTTTTGATAATGA</canonical>
            <polymorphic>CTCATTCTGCTCCATTTCTTCCATCGTTTTTCGAAACTCGCGCTCTTTTTCGAGAAGCTTCTGCAAGTATCAATTCATTAATTACATTCACCATTTTGAAAAAAAATACGTGAGTTTTGAAACGGTGGACATTTTTACTGTTTCTAGTAGTTGGTTTATTGCGGATGAAGTTATTGGAGGTGTTTATGCGACGATTCATGCTATTATGCTTGTTTGAGAAAAAAAAAGGTTAGAGAGTATTTTTTGCATTCTAAATACGGTAGCGATATCGAAGCGGAGAGCCTAAATAGCACACATAAGGTGGAGACGCAGACACTTTTCCTCTGCGTCTCAGCCTTTTATTTCTCAGACAAGCATAGTAGAACTCATACTCTCACTTCAAGGAAAACTTTGAAACTTCGCGTTCAAAAGTCTCACAAACAGCAGAATAATTCTACCAGTTATGCGAAATTGTAATAAATCATTAAGACCATTTTCTTGTGAAAGTATAAGCTCACCTYTCTTCCCCTCTTCTCCACTTCTTCCATCTCCTTTTGAACTTTGATTTTTTCGGTTTTCTCGCGATCCAAAAGCTGAAATTTTGAGTGTATATATTCTGTTTCACATAAATGATATTAAATTGGAAAAGTTATTACTTTTTACAGATTTATAGTTCTCACAGTGGAAAATAATTACAACTAACTTGTAAGTTCCCAATTTTCTCATGCGATACATGAAAAGCCAGAAACATTTTTTCTTGAATACAAATGTTTTGTTTTTTTTTCTTTCTTTCTATGATGAAAAATCGTAATCACTGAATTTTTAAAAATTCAAATAAATCCGAACAATTAATAAATCAGCATCTTTAAAGAAGCCTATACTCCAACACTTCCAGCTCAAATATCTCAATTTTTGTAAAAGACATCAAAAAACTTTCAACTGGTAAGATGCTGGTGATATTATGATAAACATTTTATCAGTAAATATGTTTCAATATTTCCCATAAAATTTTTGATAATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATACTCTCACTTCAAGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGTGAAACAGAATATATACACTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TCATACTCTCACTTCAAGGAAAACTTTGAAACTTCGCGTTCAAAAGTCTCACAAACAGCAGAATAATTCTACCAGTTATGCGAAATTGTAATAAATCATTAAGACCATTTTCTTGTGAAAGTATAAGCTCACCTTTCTTCCCCTCTTCTCCACTTCTTCCATCTCCTTTTGAACTTTGATTTTTTCGGTTTTCTCGCGATCCAAAAGCTGAAATTTTGAGTGTATATATTCTGTTTCACA</canonical_amplicon>
		<polymorphic_amplicon>TCATACTCTCACTTCAAGGAAAACTTTGAAACTTCGCGTTCAAAAGTCTCACAAACAGCAGAATAATTCTACCAGTTATGCGAAATTGTAATAAATCATTAAGACCATTTTCTTGTGAAAGTATAAGCTCACCTYTCTTCCCCTCTTCTCCACTTCTTCCATCTCCTTTTGAACTTTGATTTTTTCGGTTTTCTCGCGATCCAAAAGCTGAAATTTTGAGTGTATATATTCTGTTTCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36486</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>200218</contig_pos>
        <strand>+</strand>
        <context>ATAGTTCTCA[C/T]AGTGGAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGATATTAAATTGGAAAAGTTATTACTTTTTACAGATTTATAGTTCTCA</left_flank>
        <right_flank>AGTGGAAAATAATTACAACTAACTTGTAAGTTCCCAATTTTCTCATGCGA</right_flank>
        <qual_score>148</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCGGATGAAGTTATTGGAGGTGTTTATGCGACGATTCATGCTATTATGCTTGTTTGAGAAAAAAAAAGGTTAGAGAGTATTTTTTGCATTCTAAATACGGTAGCGATATCGAAGCGGAGAGCCTAAATAGCACACATAAGGTGGAGACGCAGACACTTTTCCTCTGCGTCTCAGCCTTTTATTTCTCAGACAAGCATAGTAGAACTCATACTCTCACTTCAAGGAAAACTTTGAAACTTCGCGTTCAAAAGTCTCACAAACAGCAGAATAATTCTACCAGTTATGCGAAATTGTAATAAATCATTAAGACCATTTTCTTGTGAAAGTATAAGCTCACCTTTCTTCCCCTCTTCTCCACTTCTTCCATCTCCTTTTGAACTTTGATTTTTTCGGTTTTCTCGCGATCCAAAAGCTGAAATTTTGAGTGTATATATTCTGTTTCACATAAATGATATTAAATTGGAAAAGTTATTACTTTTTACAGATTTATAGTTCTCACAGTGGAAAATAATTACAACTAACTTGTAAGTTCCCAATTTTCTCATGCGATACATGAAAAGCCAGAAACATTTTTTCTTGAATACAAATGTTTTGTTTTTTTTTCTTTCTTTCTATGATGAAAAATCGTAATCACTGAATTTTTAAAAATTCAAATAAATCCGAACAATTAATAAATCAGCATCTTTAAAGAAGCCTATACTCCAACACTTCCAGCTCAAATATCTCAATTTTTGTAAAAGACATCAAAAAACTTTCAACTGGTAAGATGCTGGTGATATTATGATAAACATTTTATCAGTAAATATGTTTCAATATTTCCCATAAAATTTTTGATAATGAAACTCAAACTAAAAGTACCCGGTAGCGTCCTAGTAGAGCATTTACAGTATTATAAAATCAAATTGTTGCAGATTCTAAAAGTTGTAATATGCATCACACTTTTTCAAAATTCAATAAAATCAATATCATATTGTCACTCACCATGCTCAATTTCAGATT</canonical>
            <polymorphic>TGCGGATGAAGTTATTGGAGGTGTTTATGCGACGATTCATGCTATTATGCTTGTTTGAGAAAAAAAAAGGTTAGAGAGTATTTTTTGCATTCTAAATACGGTAGCGATATCGAAGCGGAGAGCCTAAATAGCACACATAAGGTGGAGACGCAGACACTTTTCCTCTGCGTCTCAGCCTTTTATTTCTCAGACAAGCATAGTAGAACTCATACTCTCACTTCAAGGAAAACTTTGAAACTTCGCGTTCAAAAGTCTCACAAACAGCAGAATAATTCTACCAGTTATGCGAAATTGTAATAAATCATTAAGACCATTTTCTTGTGAAAGTATAAGCTCACCTTTCTTCCCCTCTTCTCCACTTCTTCCATCTCCTTTTGAACTTTGATTTTTTCGGTTTTCTCGCGATCCAAAAGCTGAAATTTTGAGTGTATATATTCTGTTTCACATAAATGATATTAAATTGGAAAAGTTATTACTTTTTACAGATTTATAGTTCTCAYAGTGGAAAATAATTACAACTAACTTGTAAGTTCCCAATTTTCTCATGCGATACATGAAAAGCCAGAAACATTTTTTCTTGAATACAAATGTTTTGTTTTTTTTTCTTTCTTTCTATGATGAAAAATCGTAATCACTGAATTTTTAAAAATTCAAATAAATCCGAACAATTAATAAATCAGCATCTTTAAAGAAGCCTATACTCCAACACTTCCAGCTCAAATATCTCAATTTTTGTAAAAGACATCAAAAAACTTTCAACTGGTAAGATGCTGGTGATATTATGATAAACATTTTATCAGTAAATATGTTTCAATATTTCCCATAAAATTTTTGATAATGAAACTCAAACTAAAAGTACCCGGTAGCGTCCTAGTAGAGCATTTACAGTATTATAAAATCAAATTGTTGCAGATTCTAAAAGTTGTAATATGCATCACACTTTTTCAAAATTCAATAAAATCAATATCATATTGTCACTCACCATGCTCAATTTCAGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>401 386 113 100</canonical_bands>
                <polymorphic_bands>787 113 100</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>161 130 110 74 70 68 66 61 55 40 38 23 21 19 16 14 12 9 5 4 2 2</canonical_bands>
                <polymorphic_bands>161 130 110 74 70 68 66 61 60 40 38 23 21 19 16 14 12 9 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTGTGAAAGTATAAGCTCACCT</pcr_primer_p1>
		<pcr_primer_p2>ATGTTTCTGGCTTTTCATGTAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CTTGTGAAAGTATAAGCTCACCTTTCTTCCCCTCTTCTCCACTTCTTCCATCTCCTTTTGAACTTTGATTTTTTCGGTTTTCTCGCGATCCAAAAGCTGAAATTTTGAGTGTATATATTCTGTTTCACATAAATGATATTAAATTGGAAAAGTTATTACTTTTTACAGATTTATAGTTCTCACAGTGGAAAATAATTACAACTAACTTGTAAGTTCCCAATTTTCTCATGCGATACATGAAAAGCCAGAAACAT</canonical_amplicon>
		<polymorphic_amplicon>CTTGTGAAAGTATAAGCTCACCTTTCTTCCCCTCTTCTCCACTTCTTCCATCTCCTTTTGAACTTTGATTTTTTCGGTTTTCTCGCGATCCAAAAGCTGAAATTTTGAGTGTATATATTCTGTTTCACATAAATGATATTAAATTGGAAAAGTTATTACTTTTTACAGATTTATAGTTCTCAYAGTGGAAAATAATTACAACTAACTTGTAAGTTCCCAATTTTCTCATGCGATACATGAAAAGCCAGAAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36487</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>200251</contig_pos>
        <strand>+</strand>
        <context>CTTGTAAGTT[A/C]CCAATTTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAGATTTATAGTTCTCACAGTGGAAAATAATTACAACTAACTTGTAAGTT</left_flank>
        <right_flank>CCAATTTTCTCATGCGATACATGAAAAGCCAGAAACATTTTTTCTTGAAT</right_flank>
        <qual_score>148</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTCATGCTATTATGCTTGTTTGAGAAAAAAAAAGGTTAGAGAGTATTTTTTGCATTCTAAATACGGTAGCGATATCGAAGCGGAGAGCCTAAATAGCACACATAAGGTGGAGACGCAGACACTTTTCCTCTGCGTCTCAGCCTTTTATTTCTCAGACAAGCATAGTAGAACTCATACTCTCACTTCAAGGAAAACTTTGAAACTTCGCGTTCAAAAGTCTCACAAACAGCAGAATAATTCTACCAGTTATGCGAAATTGTAATAAATCATTAAGACCATTTTCTTGTGAAAGTATAAGCTCACCTTTCTTCCCCTCTTCTCCACTTCTTCCATCTCCTTTTGAACTTTGATTTTTTCGGTTTTCTCGCGATCCAAAAGCTGAAATTTTGAGTGTATATATTCTGTTTCACATAAATGATATTAAATTGGAAAAGTTATTACTTTTTACAGATTTATAGTTCTCACAGTGGAAAATAATTACAACTAACTTGTAAGTTCCCAATTTTCTCATGCGATACATGAAAAGCCAGAAACATTTTTTCTTGAATACAAATGTTTTGTTTTTTTTTCTTTCTTTCTATGATGAAAAATCGTAATCACTGAATTTTTAAAAATTCAAATAAATCCGAACAATTAATAAATCAGCATCTTTAAAGAAGCCTATACTCCAACACTTCCAGCTCAAATATCTCAATTTTTGTAAAAGACATCAAAAAACTTTCAACTGGTAAGATGCTGGTGATATTATGATAAACATTTTATCAGTAAATATGTTTCAATATTTCCCATAAAATTTTTGATAATGAAACTCAAACTAAAAGTACCCGGTAGCGTCCTAGTAGAGCATTTACAGTATTATAAAATCAAATTGTTGCAGATTCTAAAAGTTGTAATATGCATCACACTTTTTCAAAATTCAATAAAATCAATATCATATTGTCACTCACCATGCTCAATTTCAGATTTTCCTTCAATGCCTCCTCATTCTTCGTTTCCAT</canonical>
            <polymorphic>GATTCATGCTATTATGCTTGTTTGAGAAAAAAAAAGGTTAGAGAGTATTTTTTGCATTCTAAATACGGTAGCGATATCGAAGCGGAGAGCCTAAATAGCACACATAAGGTGGAGACGCAGACACTTTTCCTCTGCGTCTCAGCCTTTTATTTCTCAGACAAGCATAGTAGAACTCATACTCTCACTTCAAGGAAAACTTTGAAACTTCGCGTTCAAAAGTCTCACAAACAGCAGAATAATTCTACCAGTTATGCGAAATTGTAATAAATCATTAAGACCATTTTCTTGTGAAAGTATAAGCTCACCTTTCTTCCCCTCTTCTCCACTTCTTCCATCTCCTTTTGAACTTTGATTTTTTCGGTTTTCTCGCGATCCAAAAGCTGAAATTTTGAGTGTATATATTCTGTTTCACATAAATGATATTAAATTGGAAAAGTTATTACTTTTTACAGATTTATAGTTCTCACAGTGGAAAATAATTACAACTAACTTGTAAGTTMCCAATTTTCTCATGCGATACATGAAAAGCCAGAAACATTTTTTCTTGAATACAAATGTTTTGTTTTTTTTTCTTTCTTTCTATGATGAAAAATCGTAATCACTGAATTTTTAAAAATTCAAATAAATCCGAACAATTAATAAATCAGCATCTTTAAAGAAGCCTATACTCCAACACTTCCAGCTCAAATATCTCAATTTTTGTAAAAGACATCAAAAAACTTTCAACTGGTAAGATGCTGGTGATATTATGATAAACATTTTATCAGTAAATATGTTTCAATATTTCCCATAAAATTTTTGATAATGAAACTCAAACTAAAAGTACCCGGTAGCGTCCTAGTAGAGCATTTACAGTATTATAAAATCAAATTGTTGCAGATTCTAAAAGTTGTAATATGCATCACACTTTTTCAAAATTCAATAAAATCAATATCATATTGTCACTCACCATGCTCAATTTCAGATTTTCCTTCAATGCCTCCTCATTCTTCGTTTCCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTCTCCACTTCTTCCATCT</pcr_primer_p1>
		<pcr_primer_p2>AACAAAACATTTGTATTCAAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTTCTCCACTTCTTCCATCTCCTTTTGAACTTTGATTTTTTCGGTTTTCTCGCGATCCAAAAGCTGAAATTTTGAGTGTATATATTCTGTTTCACATAAATGATATTAAATTGGAAAAGTTATTACTTTTTACAGATTTATAGTTCTCACAGTGGAAAATAATTACAACTAACTTGTAAGTTCCCAATTTTCTCATGCGATACATGAAAAGCCAGAAACATTTTTTCTTGAATACAAATGTTTTGTT</canonical_amplicon>
		<polymorphic_amplicon>TCTTCTCCACTTCTTCCATCTCCTTTTGAACTTTGATTTTTTCGGTTTTCTCGCGATCCAAAAGCTGAAATTTTGAGTGTATATATTCTGTTTCACATAAATGATATTAAATTGGAAAAGTTATTACTTTTTACAGATTTATAGTTCTCACAGTGGAAAATAATTACAACTAACTTGTAAGTTMCCAATTTTCTCATGCGATACATGAAAAGCCAGAAACATTTTTTCTTGAATACAAATGTTTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36488</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>200554</contig_pos>
        <strand>+</strand>
        <context>AAATTTTTGA[A/T]AATKAAACTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAACATTTTATCAGTAAATATGTTTCAATATTTCCCATAAAATTTTTGA</left_flank>
        <right_flank>AATGAAACTCAAACTAAAAGTACCCGGTAGCGTCCTAGTAGAGCATTTAC</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTTTCTTCCCCTCTTCTCCACTTCTTCCATCTCCTTTTGAACTTTGATTTTTTCGGTTTTCTCGCGATCCAAAAGCTGAAATTTTGAGTGTATATATTCTGTTTCACATAAATGATATTAAATTGGAAAAGTTATTACTTTTTACAGATTTATAGTTCTCACAGTGGAAAATAATTACAACTAACTTGTAAGTTCCCAATTTTCTCATGCGATACATGAAAAGCCAGAAACATTTTTTCTTGAATACAAATGTTTTGTTTTTTTTTCTTTCTTTCTATGATGAAAAATCGTAATCACTGAATTTTTAAAAATTCAAATAAATCCGAACAATTAATAAATCAGCATCTTTAAAGAAGCCTATACTCCAACACTTCCAGCTCAAATATCTCAATTTTTGTAAAAGACATCAAAAAACTTTCAACTGGTAAGATGCTGGTGATATTATGATAAACATTTTATCAGTAAATATGTTTCAATATTTCCCATAAAATTTTTGATAATGAAACTCAAACTAAAAGTACCCGGTAGCGTCCTAGTAGAGCATTTACAGTATTATAAAATCAAATTGTTGCAGATTCTAAAAGTTGTAATATGCATCACACTTTTTCAAAATTCAATAAAATCAATATCATATTGTCACTCACCATGCTCAATTTCAGATTTTCCTTCAATGCCTCCTCATTCTTCGTTTCCATTTCCTGAATCTCTTCCTCCAATTTCATCTTCTCCTTTTCCAATTCCTCAATTCTCTCTTTATCCCGATTTTTCGGTATCAGTCCTCTCGCCAAATGATGAATACGGTACCATGGCCATTGAGATAATTGAGCAAATTGTCTGACATTTTCTTGAATTGTCAGAATTGCTTCTGCTCTTTTCCTTCTCTCTATCAGATCCTTCTGGATATTTCTGTATCTAATATTGGCTTGAATTAAGACAATAAATGAGGAAATGTAGTCATTTCGTTTTCTTTCAAGTTCAGAAATGACTCCAACTTTACA</canonical>
            <polymorphic>ACCTTTCTTCCCCTCTTCTCCACTTCTTCCATCTCCTTTTGAACTTTGATTTTTTCGGTTTTCTCGCGATCCAAAAGCTGAAATTTTGAGTGTATATATTCTGTTTCACATAAATGATATTAAATTGGAAAAGTTATTACTTTTTACAGATTTATAGTTCTCACAGTGGAAAATAATTACAACTAACTTGTAAGTTCCCAATTTTCTCATGCGATACATGAAAAGCCAGAAACATTTTTTCTTGAATACAAATGTTTTGTTTTTTTTTCTTTCTTTCTATGATGAAAAATCGTAATCACTGAATTTTTAAAAATTCAAATAAATCCGAACAATTAATAAATCAGCATCTTTAAAGAAGCCTATACTCCAACACTTCCAGCTCAAATATCTCAATTTTTGTAAAAGACATCAAAAAACTTTCAACTGGTAAGATGCTGGTGATATTATGATAAACATTTTATCAGTAAATATGTTTCAATATTTCCCATAAAATTTTTGAWAATGAAACTCAAACTAAAAGTACCCGGTAGCGTCCTAGTAGAGCATTTACAGTATTATAAAATCAAATTGTTGCAGATTCTAAAAGTTGTAATATGCATCACACTTTTTCAAAATTCAATAAAATCAATATCATATTGTCACTCACCATGCTCAATTTCAGATTTTCCTTCAATGCCTCCTCATTCTTCGTTTCCATTTCCTGAATCTCTTCCTCCAATTTCATCTTCTCCTTTTCCAATTCCTCAATTCTCTCTTTATCCCGATTTTTCGGTATCAGTCCTCTCGCCAAATGATGAATACGGTACCATGGCCATTGAGATAATTGAGCAAATTGTCTGACATTTTCTTGAATTGTCAGAATTGCTTCTGCTCTTTTCCTTCTCTCTATCAGATCCTTCTGGATATTTCTGTATCTAATATTGGCTTGAATTAAGACAATAAATGAGGAAATGTAGTCATTTCGTTTTCTTTCAAGTTCAGAAATGACTCCAACTTTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACAATTAATAAATCAGCATCTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTAGAATCTGCAACAATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>GAACAATTAATAAATCAGCATCTTTAAAGAAGCCTATACTCCAACACTTCCAGCTCAAATATCTCAATTTTTGTAAAAGACATCAAAAAACTTTCAACTGGTAAGATGCTGGTGATATTATGATAAACATTTTATCAGTAAATATGTTTCAATATTTCCCATAAAATTTTTGATAATGAAACTCAAACTAAAAGTACCCGGTAGCGTCCTAGTAGAGCATTTACAGTATTATAAAATCAAATTGTTGCAGATTCTAAA</canonical_amplicon>
		<polymorphic_amplicon>GAACAATTAATAAATCAGCATCTTTAAAGAAGCCTATACTCCAACACTTCCAGCTCAAATATCTCAATTTTTGTAAAAGACATCAAAAAACTTTCAACTGGTAAGATGCTGGTGATATTATGATAAACATTTTATCAGTAAATATGTTTCAATATTTCCCATAAAATTTTTGAWAATGAAACTCAAACTAAAAGTACCCGGTAGCGTCCTAGTAGAGCATTTACAGTATTATAAAATCAAATTGTTGCAGATTCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36489</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>200558</contig_pos>
        <strand>+</strand>
        <context>TTTTGAWAAT[G/T]AAACTCAAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATTTTATCAGTAAATATGTTTCAATATTTCCCATAAAATTTTTGATAAT</left_flank>
        <right_flank>AAACTCAAACTAAAAGTACCCGGTAGCGTCCTAGTAGAGCATTTACAGTA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTCCCCTCTTCTCCACTTCTTCCATCTCCTTTTGAACTTTGATTTTTTCGGTTTTCTCGCGATCCAAAAGCTGAAATTTTGAGTGTATATATTCTGTTTCACATAAATGATATTAAATTGGAAAAGTTATTACTTTTTACAGATTTATAGTTCTCACAGTGGAAAATAATTACAACTAACTTGTAAGTTCCCAATTTTCTCATGCGATACATGAAAAGCCAGAAACATTTTTTCTTGAATACAAATGTTTTGTTTTTTTTTCTTTCTTTCTATGATGAAAAATCGTAATCACTGAATTTTTAAAAATTCAAATAAATCCGAACAATTAATAAATCAGCATCTTTAAAGAAGCCTATACTCCAACACTTCCAGCTCAAATATCTCAATTTTTGTAAAAGACATCAAAAAACTTTCAACTGGTAAGATGCTGGTGATATTATGATAAACATTTTATCAGTAAATATGTTTCAATATTTCCCATAAAATTTTTGATAATGAAACTCAAACTAAAAGTACCCGGTAGCGTCCTAGTAGAGCATTTACAGTATTATAAAATCAAATTGTTGCAGATTCTAAAAGTTGTAATATGCATCACACTTTTTCAAAATTCAATAAAATCAATATCATATTGTCACTCACCATGCTCAATTTCAGATTTTCCTTCAATGCCTCCTCATTCTTCGTTTCCATTTCCTGAATCTCTTCCTCCAATTTCATCTTCTCCTTTTCCAATTCCTCAATTCTCTCTTTATCCCGATTTTTCGGTATCAGTCCTCTCGCCAAATGATGAATACGGTACCATGGCCATTGAGATAATTGAGCAAATTGTCTGACATTTTCTTGAATTGTCAGAATTGCTTCTGCTCTTTTCCTTCTCTCTATCAGATCCTTCTGGATATTTCTGTATCTAATATTGGCTTGAATTAAGACAATAAATGAGGAAATGTAGTCATTTCGTTTTCTTTCAAGTTCAGAAATGACTCCAACTTTACAGAAC</canonical>
            <polymorphic>TTCTTCCCCTCTTCTCCACTTCTTCCATCTCCTTTTGAACTTTGATTTTTTCGGTTTTCTCGCGATCCAAAAGCTGAAATTTTGAGTGTATATATTCTGTTTCACATAAATGATATTAAATTGGAAAAGTTATTACTTTTTACAGATTTATAGTTCTCACAGTGGAAAATAATTACAACTAACTTGTAAGTTCCCAATTTTCTCATGCGATACATGAAAAGCCAGAAACATTTTTTCTTGAATACAAATGTTTTGTTTTTTTTTCTTTCTTTCTATGATGAAAAATCGTAATCACTGAATTTTTAAAAATTCAAATAAATCCGAACAATTAATAAATCAGCATCTTTAAAGAAGCCTATACTCCAACACTTCCAGCTCAAATATCTCAATTTTTGTAAAAGACATCAAAAAACTTTCAACTGGTAAGATGCTGGTGATATTATGATAAACATTTTATCAGTAAATATGTTTCAATATTTCCCATAAAATTTTTGATAATKAAACTCAAACTAAAAGTACCCGGTAGCGTCCTAGTAGAGCATTTACAGTATTATAAAATCAAATTGTTGCAGATTCTAAAAGTTGTAATATGCATCACACTTTTTCAAAATTCAATAAAATCAATATCATATTGTCACTCACCATGCTCAATTTCAGATTTTCCTTCAATGCCTCCTCATTCTTCGTTTCCATTTCCTGAATCTCTTCCTCCAATTTCATCTTCTCCTTTTCCAATTCCTCAATTCTCTCTTTATCCCGATTTTTCGGTATCAGTCCTCTCGCCAAATGATGAATACGGTACCATGGCCATTGAGATAATTGAGCAAATTGTCTGACATTTTCTTGAATTGTCAGAATTGCTTCTGCTCTTTTCCTTCTCTCTATCAGATCCTTCTGGATATTTCTGTATCTAATATTGGCTTGAATTAAGACAATAAATGAGGAAATGTAGTCATTTCGTTTTCTTTCAAGTTCAGAAATGACTCCAACTTTACAGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACAATTAATAAATCAGCATCTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTAGAATCTGCAACAATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>GAACAATTAATAAATCAGCATCTTTAAAGAAGCCTATACTCCAACACTTCCAGCTCAAATATCTCAATTTTTGTAAAAGACATCAAAAAACTTTCAACTGGTAAGATGCTGGTGATATTATGATAAACATTTTATCAGTAAATATGTTTCAATATTTCCCATAAAATTTTTGATAATGAAACTCAAACTAAAAGTACCCGGTAGCGTCCTAGTAGAGCATTTACAGTATTATAAAATCAAATTGTTGCAGATTCTAAA</canonical_amplicon>
		<polymorphic_amplicon>GAACAATTAATAAATCAGCATCTTTAAAGAAGCCTATACTCCAACACTTCCAGCTCAAATATCTCAATTTTTGTAAAAGACATCAAAAAACTTTCAACTGGTAAGATGCTGGTGATATTATGATAAACATTTTATCAGTAAATATGTTTCAATATTTCCCATAAAATTTTTGATAATKAAACTCAAACTAAAAGTACCCGGTAGCGTCCTAGTAGAGCATTTACAGTATTATAAAATCAAATTGTTGCAGATTCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36490</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>200570</contig_pos>
        <strand>+</strand>
        <context>AACTCAAACT[A/G]AAAGTACCCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATATGTTTCAATATTTCCCATAAAATTTTTGATAATGAAACTCAAACT</left_flank>
        <right_flank>AAAGTACCCGGTAGCGTCCTAGTAGAGCATTTACAGTATTATAAAATCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCCACTTCTTCCATCTCCTTTTGAACTTTGATTTTTTCGGTTTTCTCGCGATCCAAAAGCTGAAATTTTGAGTGTATATATTCTGTTTCACATAAATGATATTAAATTGGAAAAGTTATTACTTTTTACAGATTTATAGTTCTCACAGTGGAAAATAATTACAACTAACTTGTAAGTTCCCAATTTTCTCATGCGATACATGAAAAGCCAGAAACATTTTTTCTTGAATACAAATGTTTTGTTTTTTTTTCTTTCTTTCTATGATGAAAAATCGTAATCACTGAATTTTTAAAAATTCAAATAAATCCGAACAATTAATAAATCAGCATCTTTAAAGAAGCCTATACTCCAACACTTCCAGCTCAAATATCTCAATTTTTGTAAAAGACATCAAAAAACTTTCAACTGGTAAGATGCTGGTGATATTATGATAAACATTTTATCAGTAAATATGTTTCAATATTTCCCATAAAATTTTTGATAATGAAACTCAAACTAAAAGTACCCGGTAGCGTCCTAGTAGAGCATTTACAGTATTATAAAATCAAATTGTTGCAGATTCTAAAAGTTGTAATATGCATCACACTTTTTCAAAATTCAATAAAATCAATATCATATTGTCACTCACCATGCTCAATTTCAGATTTTCCTTCAATGCCTCCTCATTCTTCGTTTCCATTTCCTGAATCTCTTCCTCCAATTTCATCTTCTCCTTTTCCAATTCCTCAATTCTCTCTTTATCCCGATTTTTCGGTATCAGTCCTCTCGCCAAATGATGAATACGGTACCATGGCCATTGAGATAATTGAGCAAATTGTCTGACATTTTCTTGAATTGTCAGAATTGCTTCTGCTCTTTTCCTTCTCTCTATCAGATCCTTCTGGATATTTCTGTATCTAATATTGGCTTGAATTAAGACAATAAATGAGGAAATGTAGTCATTTCGTTTTCTTTCAAGTTCAGAAATGACTCCAACTTTACAGAACAATTTTGTTTTT</canonical>
            <polymorphic>TCTCCACTTCTTCCATCTCCTTTTGAACTTTGATTTTTTCGGTTTTCTCGCGATCCAAAAGCTGAAATTTTGAGTGTATATATTCTGTTTCACATAAATGATATTAAATTGGAAAAGTTATTACTTTTTACAGATTTATAGTTCTCACAGTGGAAAATAATTACAACTAACTTGTAAGTTCCCAATTTTCTCATGCGATACATGAAAAGCCAGAAACATTTTTTCTTGAATACAAATGTTTTGTTTTTTTTTCTTTCTTTCTATGATGAAAAATCGTAATCACTGAATTTTTAAAAATTCAAATAAATCCGAACAATTAATAAATCAGCATCTTTAAAGAAGCCTATACTCCAACACTTCCAGCTCAAATATCTCAATTTTTGTAAAAGACATCAAAAAACTTTCAACTGGTAAGATGCTGGTGATATTATGATAAACATTTTATCAGTAAATATGTTTCAATATTTCCCATAAAATTTTTGATAATGAAACTCAAACTRAAAGTACCCGGTAGCGTCCTAGTAGAGCATTTACAGTATTATAAAATCAAATTGTTGCAGATTCTAAAAGTTGTAATATGCATCACACTTTTTCAAAATTCAATAAAATCAATATCATATTGTCACTCACCATGCTCAATTTCAGATTTTCCTTCAATGCCTCCTCATTCTTCGTTTCCATTTCCTGAATCTCTTCCTCCAATTTCATCTTCTCCTTTTCCAATTCCTCAATTCTCTCTTTATCCCGATTTTTCGGTATCAGTCCTCTCGCCAAATGATGAATACGGTACCATGGCCATTGAGATAATTGAGCAAATTGTCTGACATTTTCTTGAATTGTCAGAATTGCTTCTGCTCTTTTCCTTCTCTCTATCAGATCCTTCTGGATATTTCTGTATCTAATATTGGCTTGAATTAAGACAATAAATGAGGAAATGTAGTCATTTCGTTTTCTTTCAAGTTCAGAAATGACTCCAACTTTACAGAACAATTTTGTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACAATTAATAAATCAGCATCTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTAGAATCTGCAACAATTTGA</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>GAACAATTAATAAATCAGCATCTTTAAAGAAGCCTATACTCCAACACTTCCAGCTCAAATATCTCAATTTTTGTAAAAGACATCAAAAAACTTTCAACTGGTAAGATGCTGGTGATATTATGATAAACATTTTATCAGTAAATATGTTTCAATATTTCCCATAAAATTTTTGATAATGAAACTCAAACTAAAAGTACCCGGTAGCGTCCTAGTAGAGCATTTACAGTATTATAAAATCAAATTGTTGCAGATTCTAAA</canonical_amplicon>
		<polymorphic_amplicon>GAACAATTAATAAATCAGCATCTTTAAAGAAGCCTATACTCCAACACTTCCAGCTCAAATATCTCAATTTTTGTAAAAGACATCAAAAAACTTTCAACTGGTAAGATGCTGGTGATATTATGATAAACATTTTATCAGTAAATATGTTTCAATATTTCCCATAAAATTTTTGATAATGAAACTCAAACTRAAAGTACCCGGTAGCGTCCTAGTAGAGCATTTACAGTATTATAAAATCAAATTGTTGCAGATTCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36491</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>203297</contig_pos>
        <strand>+</strand>
        <context>TTTTCAAAAT[A/T]TCAGAATACA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGATAAGAAAAATTTCAATTTTTCTGACATTTGTAATATTTTTCAAAAT</left_flank>
        <right_flank>TCAGAATACAAAACAACTAGTTGAAAATTCGACATTCATTTTTTCACTGT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGTTTCGATTTTTTGAAACTGGAATCTCCGGCAAGATTCGAGCACAACTTTTCAAGCAGCGATTTTTCAGATCCATTTGGGACAACACATTCTTCTTCGAGGAATGACAGAACTCCCATTGGCTGAAAAATTAACTTTACTGTTTCTAATTCGTTTCGTTTGAAGAATTATCCGGTTGTATTGATAAATCCATAAGCTTACCTTCTCAATTAGATCAATAGTCGGCTGTAAATGGTTTGCAAAATTGACTTGTGTCCATTTGATTCCTTCTTCCAAATAATCAGTTTGCTCTTTTACGAACATGAAATGATTGAAAAACTGCTGAAGTTTCTCATTTGTATAATTGATGCAAAACTGTTCAAATGAGTTTTTCTCAATTATTTCGAATCCGGCAATGTCCAAAACAGCAATAAATCGACTGTTTCGGCAATCTGAAATAACAGAGAGGAGATAAGAAAAATTTCAATTTTTCTGACATTTGTAATATTTTTCAAAATTTCAGAATACAAAACAACTAGTTGAAAATTCGACATTCATTTTTTCACTGTTTGTCGCTTTTTATTTATTTTCAGTATTTATAGTCTTCTGATTGCCAATTGTATTGATTTTGCACAATATGTCAATAAGAAATTTTGATGGTTTGATTCAACAAGTAAACGACAGCAAATGTTTCGTCATTCTTTTCAGGAACAGATACTTGAGCTCAGAATGTCTGGCTCACAAACCATACAAAATATTCTTTTAACTCACAACTTTTGGTATCATCCACGGAAAACGCATCATTACATCTTTTGACCACCCATCCAAATAGTCGTTCATACAGTACTTTAGCCATTGCTGAGGCAGAAGTTAGCGTCTGAAAAAAGTAAAGGGCTTTTTAATGTTTCTTTTTTAATACTAGATTGAAACCTAGTTTTTAAACAGTAAGAATTATCTATCGGGATTATTGTACGGTTGGTATTTTTCAGCCAAAAAACTATACAGTATGAAAAATTCTG</canonical>
            <polymorphic>ATTGTTTCGATTTTTTGAAACTGGAATCTCCGGCAAGATTCGAGCACAACTTTTCAAGCAGCGATTTTTCAGATCCATTTGGGACAACACATTCTTCTTCGAGGAATGACAGAACTCCCATTGGCTGAAAAATTAACTTTACTGTTTCTAATTCGTTTCGTTTGAAGAATTATCCGGTTGTATTGATAAATCCATAAGCTTACCTTCTCAATTAGATCAATAGTCGGCTGTAAATGGTTTGCAAAATTGACTTGTGTCCATTTGATTCCTTCTTCCAAATAATCAGTTTGCTCTTTTACGAACATGAAATGATTGAAAAACTGCTGAAGTTTCTCATTTGTATAATTGATGCAAAACTGTTCAAATGAGTTTTTCTCAATTATTTCGAATCCGGCAATGTCCAAAACAGCAATAAATCGACTGTTTCGGCAATCTGAAATAACAGAGAGGAGATAAGAAAAATTTCAATTTTTCTGACATTTGTAATATTTTTCAAAATWTCAGAATACAAAACAACTAGTTGAAAATTCGACATTCATTTTTTCACTGTTTGTCGCTTTTTATTTATTTTCAGTATTTATAGTCTTCTGATTGCCAATTGTATTGATTTTGCACAATATGTCAATAAGAAATTTTGATGGTTTGATTCAACAAGTAAACGACAGCAAATGTTTCGTCATTCTTTTCAGGAACAGATACTTGAGCTCAGAATGTCTGGCTCACAAACCATACAAAATATTCTTTTAACTCACAACTTTTGGTATCATCCACGGAAAACGCATCATTACATCTTTTGACCACCCATCCAAATAGTCGTTCATACAGTACTTTAGCCATTGCTGAGGCAGAAGTTAGCGTCTGAAAAAAGTAAAGGGCTTTTTAATGTTTCTTTTTTAATACTAGATTGAAACCTAGTTTTTAAACAGTAAGAATTATCTATCGGGATTATTGTACGGTTGGTATTTTTCAGCCAAAAAACTATACAGTATGAAAAATTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>460 363 105 36 29 7</canonical_bands>
                <polymorphic_bands>460 363 105 65 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>300 130 99 83 71 63 42 35 34 34 30 29 19 18 7 6</canonical_bands>
                <polymorphic_bands>300 130 99 83 71 63 59 42 35 34 34 19 18 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGTCCAAAACAGCAATAAAT</pcr_primer_p1>
		<pcr_primer_p2>ACCATCAAAATTTCTTATTGACA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATGTCCAAAACAGCAATAAATCGACTGTTTCGGCAATCTGAAATAACAGAGAGGAGATAAGAAAAATTTCAATTTTTCTGACATTTGTAATATTTTTCAAAATTTCAGAATACAAAACAACTAGTTGAAAATTCGACATTCATTTTTTCACTGTTTGTCGCTTTTTATTTATTTTCAGTATTTATAGTCTTCTGATTGCCAATTGTATTGATTTTGCACAATATGTCAATAAGAAATTTTGATGGT</canonical_amplicon>
		<polymorphic_amplicon>AATGTCCAAAACAGCAATAAATCGACTGTTTCGGCAATCTGAAATAACAGAGAGGAGATAAGAAAAATTTCAATTTTTCTGACATTTGTAATATTTTTCAAAATWTCAGAATACAAAACAACTAGTTGAAAATTCGACATTCATTTTTTCACTGTTTGTCGCTTTTTATTTATTTTCAGTATTTATAGTCTTCTGATTGCCAATTGTATTGATTTTGCACAATATGTCAATAAGAAATTTTGATGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36492</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>203332</contig_pos>
        <strand>+</strand>
        <context>AAATTCGACA[C/G]TCATTTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATATTTTTCAAAATTTCAGAATACAAAACAACTAGTTGAAAATTCGACA</left_flank>
        <right_flank>TCATTTTTTCACTGTTTGTCGCTTTTTATTTATTTTCAGTATTTATAGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATTCGAGCACAACTTTTCAAGCAGCGATTTTTCAGATCCATTTGGGACAACACATTCTTCTTCGAGGAATGACAGAACTCCCATTGGCTGAAAAATTAACTTTACTGTTTCTAATTCGTTTCGTTTGAAGAATTATCCGGTTGTATTGATAAATCCATAAGCTTACCTTCTCAATTAGATCAATAGTCGGCTGTAAATGGTTTGCAAAATTGACTTGTGTCCATTTGATTCCTTCTTCCAAATAATCAGTTTGCTCTTTTACGAACATGAAATGATTGAAAAACTGCTGAAGTTTCTCATTTGTATAATTGATGCAAAACTGTTCAAATGAGTTTTTCTCAATTATTTCGAATCCGGCAATGTCCAAAACAGCAATAAATCGACTGTTTCGGCAATCTGAAATAACAGAGAGGAGATAAGAAAAATTTCAATTTTTCTGACATTTGTAATATTTTTCAAAATTTCAGAATACAAAACAACTAGTTGAAAATTCGACATTCATTTTTTCACTGTTTGTCGCTTTTTATTTATTTTCAGTATTTATAGTCTTCTGATTGCCAATTGTATTGATTTTGCACAATATGTCAATAAGAAATTTTGATGGTTTGATTCAACAAGTAAACGACAGCAAATGTTTCGTCATTCTTTTCAGGAACAGATACTTGAGCTCAGAATGTCTGGCTCACAAACCATACAAAATATTCTTTTAACTCACAACTTTTGGTATCATCCACGGAAAACGCATCATTACATCTTTTGACCACCCATCCAAATAGTCGTTCATACAGTACTTTAGCCATTGCTGAGGCAGAAGTTAGCGTCTGAAAAAAGTAAAGGGCTTTTTAATGTTTCTTTTTTAATACTAGATTGAAACCTAGTTTTTAAACAGTAAGAATTATCTATCGGGATTATTGTACGGTTGGTATTTTTCAGCCAAAAAACTATACAGTATGAAAAATTCTGAAGATTGTGATAATATTTTATTTAGTGTTTCAGCC</canonical>
            <polymorphic>AGATTCGAGCACAACTTTTCAAGCAGCGATTTTTCAGATCCATTTGGGACAACACATTCTTCTTCGAGGAATGACAGAACTCCCATTGGCTGAAAAATTAACTTTACTGTTTCTAATTCGTTTCGTTTGAAGAATTATCCGGTTGTATTGATAAATCCATAAGCTTACCTTCTCAATTAGATCAATAGTCGGCTGTAAATGGTTTGCAAAATTGACTTGTGTCCATTTGATTCCTTCTTCCAAATAATCAGTTTGCTCTTTTACGAACATGAAATGATTGAAAAACTGCTGAAGTTTCTCATTTGTATAATTGATGCAAAACTGTTCAAATGAGTTTTTCTCAATTATTTCGAATCCGGCAATGTCCAAAACAGCAATAAATCGACTGTTTCGGCAATCTGAAATAACAGAGAGGAGATAAGAAAAATTTCAATTTTTCTGACATTTGTAATATTTTTCAAAATTTCAGAATACAAAACAACTAGTTGAAAATTCGACASTCATTTTTTCACTGTTTGTCGCTTTTTATTTATTTTCAGTATTTATAGTCTTCTGATTGCCAATTGTATTGATTTTGCACAATATGTCAATAAGAAATTTTGATGGTTTGATTCAACAAGTAAACGACAGCAAATGTTTCGTCATTCTTTTCAGGAACAGATACTTGAGCTCAGAATGTCTGGCTCACAAACCATACAAAATATTCTTTTAACTCACAACTTTTGGTATCATCCACGGAAAACGCATCATTACATCTTTTGACCACCCATCCAAATAGTCGTTCATACAGTACTTTAGCCATTGCTGAGGCAGAAGTTAGCGTCTGAAAAAAGTAAAGGGCTTTTTAATGTTTCTTTTTTAATACTAGATTGAAACCTAGTTTTTAAACAGTAAGAATTATCTATCGGGATTATTGTACGGTTGGTATTTTTCAGCCAAAAAACTATACAGTATGAAAAATTCTGAAGATTGTGATAATATTTTATTTAGTGTTTCAGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTCCAAAACAGCAATAAAT</pcr_primer_p1>
		<pcr_primer_p2>ACCATCAAAATTTCTTATTGACA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATGTCCAAAACAGCAATAAATCGACTGTTTCGGCAATCTGAAATAACAGAGAGGAGATAAGAAAAATTTCAATTTTTCTGACATTTGTAATATTTTTCAAAATTTCAGAATACAAAACAACTAGTTGAAAATTCGACATTCATTTTTTCACTGTTTGTCGCTTTTTATTTATTTTCAGTATTTATAGTCTTCTGATTGCCAATTGTATTGATTTTGCACAATATGTCAATAAGAAATTTTGATGGT</canonical_amplicon>
		<polymorphic_amplicon>AATGTCCAAAACAGCAATAAATCGACTGTTTCGGCAATCTGAAATAACAGAGAGGAGATAAGAAAAATTTCAATTTTTCTGACATTTGTAATATTTTTCAAAATTTCAGAATACAAAACAACTAGTTGAAAATTCGACASTCATTTTTTCACTGTTTGTCGCTTTTTATTTATTTTCAGTATTTATAGTCTTCTGATTGCCAATTGTATTGATTTTGCACAATATGTCAATAAGAAATTTTGATGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36493</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>203350</contig_pos>
        <strand></strand>
        <context>TTCACTGTTT[G/C]TCGCTTTTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AGAATACAAAACAACTAGTTGAAAATTCGACATTCATTTTTTCACTGTTT</left_flank>
        <right_flank>TCGCTTTTTATTTATTTTCAGTATTTATAGTCTTCTGATTGCCAATTGTA</right_flank>
        <qual_score>47</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAGCAGCGATTTTTCAGATCCATTTGGGACAACACATTCTTCTTCGAGGAATGACAGAACTCCCATTGGCTGAAAAATTAACTTTACTGTTTCTAATTCGTTTCGTTTGAAGAATTATCCGGTTGTATTGATAAATCCATAAGCTTACCTTCTCAATTAGATCAATAGTCGGCTGTAAATGGTTTGCAAAATTGACTTGTGTCCATTTGATTCCTTCTTCCAAATAATCAGTTTGCTCTTTTACGAACATGAAATGATTGAAAAACTGCTGAAGTTTCTCATTTGTATAATTGATGCAAAACTGTTCAAATGAGTTTTTCTCAATTATTTCGAATCCGGCAATGTCCAAAACAGCAATAAATCGACTGTTTCGGCAATCTGAAATAACAGAGAGGAGATAAGAAAAATTTCAATTTTTCTGACATTTGTAATATTTTTCAAAATTTCAGAATACAAAACAACTAGTTGAAAATTCGACATTCATTTTTTCACTGTTTGTCGCTTTTTATTTATTTTCAGTATTTATAGTCTTCTGATTGCCAATTGTATTGATTTTGCACAATATGTCAATAAGAAATTTTGATGGTTTGATTCAACAAGTAAACGACAGCAAATGTTTCGTCATTCTTTTCAGGAACAGATACTTGAGCTCAGAATGTCTGGCTCACAAACCATACAAAATATTCTTTTAACTCACAACTTTTGGTATCATCCACGGAAAACGCATCATTACATCTTTTGACCACCCATCCAAATAGTCGTTCATACAGTACTTTAGCCATTGCTGAGGCAGAAGTTAGCGTCTGAAAAAAGTAAAGGGCTTTTTAATGTTTCTTTTTTAATACTAGATTGAAACCTAGTTTTTAAACAGTAAGAATTATCTATCGGGATTATTGTACGGTTGGTATTTTTCAGCCAAAAAACTATACAGTATGAAAAATTCTGAAGATTGTGATAATATTTTATTTAGTGTTTCAGCCAATTTTCAGAAACTCGAA</canonical>
            <polymorphic>TCAAGCAGCGATTTTTCAGATCCATTTGGGACAACACATTCTTCTTCGAGGAATGACAGAACTCCCATTGGCTGAAAAATTAACTTTACTGTTTCTAATTCGTTTCGTTTGAAGAATTATCCGGTTGTATTGATAAATCCATAAGCTTACCTTCTCAATTAGATCAATAGTCGGCTGTAAATGGTTTGCAAAATTGACTTGTGTCCATTTGATTCCTTCTTCCAAATAATCAGTTTGCTCTTTTACGAACATGAAATGATTGAAAAACTGCTGAAGTTTCTCATTTGTATAATTGATGCAAAACTGTTCAAATGAGTTTTTCTCAATTATTTCGAATCCGGCAATGTCCAAAACAGCAATAAATCGACTGTTTCGGCAATCTGAAATAACAGAGAGGAGATAAGAAAAATTTCAATTTTTCTGACATTTGTAATATTTTTCAAAATTTCAGAATACAAAACAACTAGTTGAAAATTCGACATTCATTTTTTCACTGTTTSTCGCTTTTTATTTATTTTCAGTATTTATAGTCTTCTGATTGCCAATTGTATTGATTTTGCACAATATGTCAATAAGAAATTTTGATGGTTTGATTCAACAAGTAAACGACAGCAAATGTTTCGTCATTCTTTTCAGGAACAGATACTTGAGCTCAGAATGTCTGGCTCACAAACCATACAAAATATTCTTTTAACTCACAACTTTTGGTATCATCCACGGAAAACGCATCATTACATCTTTTGACCACCCATCCAAATAGTCGTTCATACAGTACTTTAGCCATTGCTGAGGCAGAAGTTAGCGTCTGAAAAAAGTAAAGGGCTTTTTAATGTTTCTTTTTTAATACTAGATTGAAACCTAGTTTTTAAACAGTAAGAATTATCTATCGGGATTATTGTACGGTTGGTATTTTTCAGCCAAAAAACTATACAGTATGAAAAATTCTGAAGATTGTGATAATATTTTATTTAGTGTTTCAGCCAATTTTCAGAAACTCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTCCAAAACAGCAATAAAT</pcr_primer_p1>
		<pcr_primer_p2>ACCATCAAAATTTCTTATTGACA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATGTCCAAAACAGCAATAAATCGACTGTTTCGGCAATCTGAAATAACAGAGAGGAGATAAGAAAAATTTCAATTTTTCTGACATTTGTAATATTTTTCAAAATTTCAGAATACAAAACAACTAGTTGAAAATTCGACATTCATTTTTTCACTGTTTGTCGCTTTTTATTTATTTTCAGTATTTATAGTCTTCTGATTGCCAATTGTATTGATTTTGCACAATATGTCAATAAGAAATTTTGATGGT</canonical_amplicon>
		<polymorphic_amplicon>AATGTCCAAAACAGCAATAAATCGACTGTTTCGGCAATCTGAAATAACAGAGAGGAGATAAGAAAAATTTCAATTTTTCTGACATTTGTAATATTTTTCAAAATTTCAGAATACAAAACAACTAGTTGAAAATTCGACATTCATTTTTTCACTGTTTSTCGCTTTTTATTTATTTTCAGTATTTATAGTCTTCTGATTGCCAATTGTATTGATTTTGCACAATATGTCAATAAGAAATTTTGATGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36494</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>203377</contig_pos>
        <strand>+</strand>
        <context>TTCAGTATTT[A/T]YAGTCTTCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGACATTCATTTTTTCACTGTTTGTCGCTTTTTATTTATTTTCAGTATTT</left_flank>
        <right_flank>TAGTCTTCTGATTGCCAATTGTATTGATTTTGCACAATATGTCAATAAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGACAACACATTCTTCTTCGAGGAATGACAGAACTCCCATTGGCTGAAAAATTAACTTTACTGTTTCTAATTCGTTTCGTTTGAAGAATTATCCGGTTGTATTGATAAATCCATAAGCTTACCTTCTCAATTAGATCAATAGTCGGCTGTAAATGGTTTGCAAAATTGACTTGTGTCCATTTGATTCCTTCTTCCAAATAATCAGTTTGCTCTTTTACGAACATGAAATGATTGAAAAACTGCTGAAGTTTCTCATTTGTATAATTGATGCAAAACTGTTCAAATGAGTTTTTCTCAATTATTTCGAATCCGGCAATGTCCAAAACAGCAATAAATCGACTGTTTCGGCAATCTGAAATAACAGAGAGGAGATAAGAAAAATTTCAATTTTTCTGACATTTGTAATATTTTTCAAAATTTCAGAATACAAAACAACTAGTTGAAAATTCGACATTCATTTTTTCACTGTTTGTCGCTTTTTATTTATTTTCAGTATTTATAGTCTTCTGATTGCCAATTGTATTGATTTTGCACAATATGTCAATAAGAAATTTTGATGGTTTGATTCAACAAGTAAACGACAGCAAATGTTTCGTCATTCTTTTCAGGAACAGATACTTGAGCTCAGAATGTCTGGCTCACAAACCATACAAAATATTCTTTTAACTCACAACTTTTGGTATCATCCACGGAAAACGCATCATTACATCTTTTGACCACCCATCCAAATAGTCGTTCATACAGTACTTTAGCCATTGCTGAGGCAGAAGTTAGCGTCTGAAAAAAGTAAAGGGCTTTTTAATGTTTCTTTTTTAATACTAGATTGAAACCTAGTTTTTAAACAGTAAGAATTATCTATCGGGATTATTGTACGGTTGGTATTTTTCAGCCAAAAAACTATACAGTATGAAAAATTCTGAAGATTGTGATAATATTTTATTTAGTGTTTCAGCCAATTTTCAGAAACTCGAACGACGGAATTAGAAACTCCTCCGACGT</canonical>
            <polymorphic>GGGACAACACATTCTTCTTCGAGGAATGACAGAACTCCCATTGGCTGAAAAATTAACTTTACTGTTTCTAATTCGTTTCGTTTGAAGAATTATCCGGTTGTATTGATAAATCCATAAGCTTACCTTCTCAATTAGATCAATAGTCGGCTGTAAATGGTTTGCAAAATTGACTTGTGTCCATTTGATTCCTTCTTCCAAATAATCAGTTTGCTCTTTTACGAACATGAAATGATTGAAAAACTGCTGAAGTTTCTCATTTGTATAATTGATGCAAAACTGTTCAAATGAGTTTTTCTCAATTATTTCGAATCCGGCAATGTCCAAAACAGCAATAAATCGACTGTTTCGGCAATCTGAAATAACAGAGAGGAGATAAGAAAAATTTCAATTTTTCTGACATTTGTAATATTTTTCAAAATTTCAGAATACAAAACAACTAGTTGAAAATTCGACATTCATTTTTTCACTGTTTGTCGCTTTTTATTTATTTTCAGTATTTWTAGTCTTCTGATTGCCAATTGTATTGATTTTGCACAATATGTCAATAAGAAATTTTGATGGTTTGATTCAACAAGTAAACGACAGCAAATGTTTCGTCATTCTTTTCAGGAACAGATACTTGAGCTCAGAATGTCTGGCTCACAAACCATACAAAATATTCTTTTAACTCACAACTTTTGGTATCATCCACGGAAAACGCATCATTACATCTTTTGACCACCCATCCAAATAGTCGTTCATACAGTACTTTAGCCATTGCTGAGGCAGAAGTTAGCGTCTGAAAAAAGTAAAGGGCTTTTTAATGTTTCTTTTTTAATACTAGATTGAAACCTAGTTTTTAAACAGTAAGAATTATCTATCGGGATTATTGTACGGTTGGTATTTTTCAGCCAAAAAACTATACAGTATGAAAAATTCTGAAGATTGTGATAATATTTTATTTAGTGTTTCAGCCAATTTTCAGAAACTCGAACGACGGAATTAGAAACTCCTCCGACGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTCCAAAACAGCAATAAAT</pcr_primer_p1>
		<pcr_primer_p2>ACCATCAAAATTTCTTATTGACA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATGTCCAAAACAGCAATAAATCGACTGTTTCGGCAATCTGAAATAACAGAGAGGAGATAAGAAAAATTTCAATTTTTCTGACATTTGTAATATTTTTCAAAATTTCAGAATACAAAACAACTAGTTGAAAATTCGACATTCATTTTTTCACTGTTTGTCGCTTTTTATTTATTTTCAGTATTTATAGTCTTCTGATTGCCAATTGTATTGATTTTGCACAATATGTCAATAAGAAATTTTGATGGT</canonical_amplicon>
		<polymorphic_amplicon>AATGTCCAAAACAGCAATAAATCGACTGTTTCGGCAATCTGAAATAACAGAGAGGAGATAAGAAAAATTTCAATTTTTCTGACATTTGTAATATTTTTCAAAATTTCAGAATACAAAACAACTAGTTGAAAATTCGACATTCATTTTTTCACTGTTTGTCGCTTTTTATTTATTTTCAGTATTTWTAGTCTTCTGATTGCCAATTGTATTGATTTTGCACAATATGTCAATAAGAAATTTTGATGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36495</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>203378</contig_pos>
        <strand>+</strand>
        <context>TCAGTATTTW[C/T]AGTCTTCTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACATTCATTTTTTCACTGTTTGTCGCTTTTTATTTATTTTCAGTATTTA</left_flank>
        <right_flank>AGTCTTCTGATTGCCAATTGTATTGATTTTGCACAATATGTCAATAAGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGACAACACATTCTTCTTCGAGGAATGACAGAACTCCCATTGGCTGAAAAATTAACTTTACTGTTTCTAATTCGTTTCGTTTGAAGAATTATCCGGTTGTATTGATAAATCCATAAGCTTACCTTCTCAATTAGATCAATAGTCGGCTGTAAATGGTTTGCAAAATTGACTTGTGTCCATTTGATTCCTTCTTCCAAATAATCAGTTTGCTCTTTTACGAACATGAAATGATTGAAAAACTGCTGAAGTTTCTCATTTGTATAATTGATGCAAAACTGTTCAAATGAGTTTTTCTCAATTATTTCGAATCCGGCAATGTCCAAAACAGCAATAAATCGACTGTTTCGGCAATCTGAAATAACAGAGAGGAGATAAGAAAAATTTCAATTTTTCTGACATTTGTAATATTTTTCAAAATTTCAGAATACAAAACAACTAGTTGAAAATTCGACATTCATTTTTTCACTGTTTGTCGCTTTTTATTTATTTTCAGTATTTATAGTCTTCTGATTGCCAATTGTATTGATTTTGCACAATATGTCAATAAGAAATTTTGATGGTTTGATTCAACAAGTAAACGACAGCAAATGTTTCGTCATTCTTTTCAGGAACAGATACTTGAGCTCAGAATGTCTGGCTCACAAACCATACAAAATATTCTTTTAACTCACAACTTTTGGTATCATCCACGGAAAACGCATCATTACATCTTTTGACCACCCATCCAAATAGTCGTTCATACAGTACTTTAGCCATTGCTGAGGCAGAAGTTAGCGTCTGAAAAAAGTAAAGGGCTTTTTAATGTTTCTTTTTTAATACTAGATTGAAACCTAGTTTTTAAACAGTAAGAATTATCTATCGGGATTATTGTACGGTTGGTATTTTTCAGCCAAAAAACTATACAGTATGAAAAATTCTGAAGATTGTGATAATATTTTATTTAGTGTTTCAGCCAATTTTCAGAAACTCGAACGACGGAATTAGAAACTCCTCCGACGTC</canonical>
            <polymorphic>GGACAACACATTCTTCTTCGAGGAATGACAGAACTCCCATTGGCTGAAAAATTAACTTTACTGTTTCTAATTCGTTTCGTTTGAAGAATTATCCGGTTGTATTGATAAATCCATAAGCTTACCTTCTCAATTAGATCAATAGTCGGCTGTAAATGGTTTGCAAAATTGACTTGTGTCCATTTGATTCCTTCTTCCAAATAATCAGTTTGCTCTTTTACGAACATGAAATGATTGAAAAACTGCTGAAGTTTCTCATTTGTATAATTGATGCAAAACTGTTCAAATGAGTTTTTCTCAATTATTTCGAATCCGGCAATGTCCAAAACAGCAATAAATCGACTGTTTCGGCAATCTGAAATAACAGAGAGGAGATAAGAAAAATTTCAATTTTTCTGACATTTGTAATATTTTTCAAAATTTCAGAATACAAAACAACTAGTTGAAAATTCGACATTCATTTTTTCACTGTTTGTCGCTTTTTATTTATTTTCAGTATTTAYAGTCTTCTGATTGCCAATTGTATTGATTTTGCACAATATGTCAATAAGAAATTTTGATGGTTTGATTCAACAAGTAAACGACAGCAAATGTTTCGTCATTCTTTTCAGGAACAGATACTTGAGCTCAGAATGTCTGGCTCACAAACCATACAAAATATTCTTTTAACTCACAACTTTTGGTATCATCCACGGAAAACGCATCATTACATCTTTTGACCACCCATCCAAATAGTCGTTCATACAGTACTTTAGCCATTGCTGAGGCAGAAGTTAGCGTCTGAAAAAAGTAAAGGGCTTTTTAATGTTTCTTTTTTAATACTAGATTGAAACCTAGTTTTTAAACAGTAAGAATTATCTATCGGGATTATTGTACGGTTGGTATTTTTCAGCCAAAAAACTATACAGTATGAAAAATTCTGAAGATTGTGATAATATTTTATTTAGTGTTTCAGCCAATTTTCAGAAACTCGAACGACGGAATTAGAAACTCCTCCGACGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTCCAAAACAGCAATAAAT</pcr_primer_p1>
		<pcr_primer_p2>ACCATCAAAATTTCTTATTGACA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATGTCCAAAACAGCAATAAATCGACTGTTTCGGCAATCTGAAATAACAGAGAGGAGATAAGAAAAATTTCAATTTTTCTGACATTTGTAATATTTTTCAAAATTTCAGAATACAAAACAACTAGTTGAAAATTCGACATTCATTTTTTCACTGTTTGTCGCTTTTTATTTATTTTCAGTATTTATAGTCTTCTGATTGCCAATTGTATTGATTTTGCACAATATGTCAATAAGAAATTTTGATGGT</canonical_amplicon>
		<polymorphic_amplicon>AATGTCCAAAACAGCAATAAATCGACTGTTTCGGCAATCTGAAATAACAGAGAGGAGATAAGAAAAATTTCAATTTTTCTGACATTTGTAATATTTTTCAAAATTTCAGAATACAAAACAACTAGTTGAAAATTCGACATTCATTTTTTCACTGTTTGTCGCTTTTTATTTATTTTCAGTATTTAYAGTCTTCTGATTGCCAATTGTATTGATTTTGCACAATATGTCAATAAGAAATTTTGATGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36496</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>203485</contig_pos>
        <strand>+</strand>
        <context>CATTCTTTTC[A/G]GGAACAGATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGGTTTGATTCAACAAGTAAACGACAGCAAATGTTTCGTCATTCTTTTC</left_flank>
        <right_flank>GGAACAGATACTTGAGCTCAGAATGTCTGGCTCACAAACCATACAAAATA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCCATAAGCTTACCTTCTCAATTAGATCAATAGTCGGCTGTAAATGGTTTGCAAAATTGACTTGTGTCCATTTGATTCCTTCTTCCAAATAATCAGTTTGCTCTTTTACGAACATGAAATGATTGAAAAACTGCTGAAGTTTCTCATTTGTATAATTGATGCAAAACTGTTCAAATGAGTTTTTCTCAATTATTTCGAATCCGGCAATGTCCAAAACAGCAATAAATCGACTGTTTCGGCAATCTGAAATAACAGAGAGGAGATAAGAAAAATTTCAATTTTTCTGACATTTGTAATATTTTTCAAAATTTCAGAATACAAAACAACTAGTTGAAAATTCGACATTCATTTTTTCACTGTTTGTCGCTTTTTATTTATTTTCAGTATTTATAGTCTTCTGATTGCCAATTGTATTGATTTTGCACAATATGTCAATAAGAAATTTTGATGGTTTGATTCAACAAGTAAACGACAGCAAATGTTTCGTCATTCTTTTCAGGAACAGATACTTGAGCTCAGAATGTCTGGCTCACAAACCATACAAAATATTCTTTTAACTCACAACTTTTGGTATCATCCACGGAAAACGCATCATTACATCTTTTGACCACCCATCCAAATAGTCGTTCATACAGTACTTTAGCCATTGCTGAGGCAGAAGTTAGCGTCTGAAAAAAGTAAAGGGCTTTTTAATGTTTCTTTTTTAATACTAGATTGAAACCTAGTTTTTAAACAGTAAGAATTATCTATCGGGATTATTGTACGGTTGGTATTTTTCAGCCAAAAAACTATACAGTATGAAAAATTCTGAAGATTGTGATAATATTTTATTTAGTGTTTCAGCCAATTTTCAGAAACTCGAACGACGGAATTAGAAACTCCTCCGACGTCTGATAGCACTTTTACTAAATCCGTTATCTGATTCGTATACTTTCTACTGGACGTTTTGCAATCGGACGTTTTAGATCTTTTACCTTTGCTAAATTCTGATTTTTCCT</canonical>
            <polymorphic>AATCCATAAGCTTACCTTCTCAATTAGATCAATAGTCGGCTGTAAATGGTTTGCAAAATTGACTTGTGTCCATTTGATTCCTTCTTCCAAATAATCAGTTTGCTCTTTTACGAACATGAAATGATTGAAAAACTGCTGAAGTTTCTCATTTGTATAATTGATGCAAAACTGTTCAAATGAGTTTTTCTCAATTATTTCGAATCCGGCAATGTCCAAAACAGCAATAAATCGACTGTTTCGGCAATCTGAAATAACAGAGAGGAGATAAGAAAAATTTCAATTTTTCTGACATTTGTAATATTTTTCAAAATTTCAGAATACAAAACAACTAGTTGAAAATTCGACATTCATTTTTTCACTGTTTGTCGCTTTTTATTTATTTTCAGTATTTATAGTCTTCTGATTGCCAATTGTATTGATTTTGCACAATATGTCAATAAGAAATTTTGATGGTTTGATTCAACAAGTAAACGACAGCAAATGTTTCGTCATTCTTTTCRGGAACAGATACTTGAGCTCAGAATGTCTGGCTCACAAACCATACAAAATATTCTTTTAACTCACAACTTTTGGTATCATCCACGGAAAACGCATCATTACATCTTTTGACCACCCATCCAAATAGTCGTTCATACAGTACTTTAGCCATTGCTGAGGCAGAAGTTAGCGTCTGAAAAAAGTAAAGGGCTTTTTAATGTTTCTTTTTTAATACTAGATTGAAACCTAGTTTTTAAACAGTAAGAATTATCTATCGGGATTATTGTACGGTTGGTATTTTTCAGCCAAAAAACTATACAGTATGAAAAATTCTGAAGATTGTGATAATATTTTATTTAGTGTTTCAGCCAATTTTCAGAAACTCGAACGACGGAATTAGAAACTCCTCCGACGTCTGATAGCACTTTTACTAAATCCGTTATCTGATTCGTATACTTTCTACTGGACGTTTTGCAATCGGACGTTTTAGATCTTTTACCTTTGCTAAATTCTGATTTTTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTGCCAATTGTATTGATTTT</pcr_primer_p1>
		<pcr_primer_p2>GGCTAAAGTACTGTATGAACGAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GATTGCCAATTGTATTGATTTTGCACAATATGTCAATAAGAAATTTTGATGGTTTGATTCAACAAGTAAACGACAGCAAATGTTTCGTCATTCTTTTCAGGAACAGATACTTGAGCTCAGAATGTCTGGCTCACAAACCATACAAAATATTCTTTTAACTCACAACTTTTGGTATCATCCACGGAAAACGCATCATTACATCTTTTGACCACCCATCCAAATAGTCGTTCATACAGTACTTTAGCC</canonical_amplicon>
		<polymorphic_amplicon>GATTGCCAATTGTATTGATTTTGCACAATATGTCAATAAGAAATTTTGATGGTTTGATTCAACAAGTAAACGACAGCAAATGTTTCGTCATTCTTTTCRGGAACAGATACTTGAGCTCAGAATGTCTGGCTCACAAACCATACAAAATATTCTTTTAACTCACAACTTTTGGTATCATCCACGGAAAACGCATCATTACATCTTTTGACCACCCATCCAAATAGTCGTTCATACAGTACTTTAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36497</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>203498</contig_pos>
        <strand>+</strand>
        <context>AACAGATACT[C/T]GAGCTCAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAAGTAAACGACAGCAAATGTTTCGTCATTCTTTTCAGGAACAGATACT</left_flank>
        <right_flank>GAGCTCAGAATGTCTGGCTCACAAACCATACAAAATATTCTTTTAACTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTTCTCAATTAGATCAATAGTCGGCTGTAAATGGTTTGCAAAATTGACTTGTGTCCATTTGATTCCTTCTTCCAAATAATCAGTTTGCTCTTTTACGAACATGAAATGATTGAAAAACTGCTGAAGTTTCTCATTTGTATAATTGATGCAAAACTGTTCAAATGAGTTTTTCTCAATTATTTCGAATCCGGCAATGTCCAAAACAGCAATAAATCGACTGTTTCGGCAATCTGAAATAACAGAGAGGAGATAAGAAAAATTTCAATTTTTCTGACATTTGTAATATTTTTCAAAATTTCAGAATACAAAACAACTAGTTGAAAATTCGACATTCATTTTTTCACTGTTTGTCGCTTTTTATTTATTTTCAGTATTTATAGTCTTCTGATTGCCAATTGTATTGATTTTGCACAATATGTCAATAAGAAATTTTGATGGTTTGATTCAACAAGTAAACGACAGCAAATGTTTCGTCATTCTTTTCAGGAACAGATACTTGAGCTCAGAATGTCTGGCTCACAAACCATACAAAATATTCTTTTAACTCACAACTTTTGGTATCATCCACGGAAAACGCATCATTACATCTTTTGACCACCCATCCAAATAGTCGTTCATACAGTACTTTAGCCATTGCTGAGGCAGAAGTTAGCGTCTGAAAAAAGTAAAGGGCTTTTTAATGTTTCTTTTTTAATACTAGATTGAAACCTAGTTTTTAAACAGTAAGAATTATCTATCGGGATTATTGTACGGTTGGTATTTTTCAGCCAAAAAACTATACAGTATGAAAAATTCTGAAGATTGTGATAATATTTTATTTAGTGTTTCAGCCAATTTTCAGAAACTCGAACGACGGAATTAGAAACTCCTCCGACGTCTGATAGCACTTTTACTAAATCCGTTATCTGATTCGTATACTTTCTACTGGACGTTTTGCAATCGGACGTTTTAGATCTTTTACCTTTGCTAAATTCTGATTTTTCCTGATAAGCTTATCA</canonical>
            <polymorphic>ACCTTCTCAATTAGATCAATAGTCGGCTGTAAATGGTTTGCAAAATTGACTTGTGTCCATTTGATTCCTTCTTCCAAATAATCAGTTTGCTCTTTTACGAACATGAAATGATTGAAAAACTGCTGAAGTTTCTCATTTGTATAATTGATGCAAAACTGTTCAAATGAGTTTTTCTCAATTATTTCGAATCCGGCAATGTCCAAAACAGCAATAAATCGACTGTTTCGGCAATCTGAAATAACAGAGAGGAGATAAGAAAAATTTCAATTTTTCTGACATTTGTAATATTTTTCAAAATTTCAGAATACAAAACAACTAGTTGAAAATTCGACATTCATTTTTTCACTGTTTGTCGCTTTTTATTTATTTTCAGTATTTATAGTCTTCTGATTGCCAATTGTATTGATTTTGCACAATATGTCAATAAGAAATTTTGATGGTTTGATTCAACAAGTAAACGACAGCAAATGTTTCGTCATTCTTTTCAGGAACAGATACTYGAGCTCAGAATGTCTGGCTCACAAACCATACAAAATATTCTTTTAACTCACAACTTTTGGTATCATCCACGGAAAACGCATCATTACATCTTTTGACCACCCATCCAAATAGTCGTTCATACAGTACTTTAGCCATTGCTGAGGCAGAAGTTAGCGTCTGAAAAAAGTAAAGGGCTTTTTAATGTTTCTTTTTTAATACTAGATTGAAACCTAGTTTTTAAACAGTAAGAATTATCTATCGGGATTATTGTACGGTTGGTATTTTTCAGCCAAAAAACTATACAGTATGAAAAATTCTGAAGATTGTGATAATATTTTATTTAGTGTTTCAGCCAATTTTCAGAAACTCGAACGACGGAATTAGAAACTCCTCCGACGTCTGATAGCACTTTTACTAAATCCGTTATCTGATTCGTATACTTTCTACTGGACGTTTTGCAATCGGACGTTTTAGATCTTTTACCTTTGCTAAATTCTGATTTTTCCTGATAAGCTTATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTGCCAATTGTATTGATTTT</pcr_primer_p1>
		<pcr_primer_p2>GGCTAAAGTACTGTATGAACGAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GATTGCCAATTGTATTGATTTTGCACAATATGTCAATAAGAAATTTTGATGGTTTGATTCAACAAGTAAACGACAGCAAATGTTTCGTCATTCTTTTCAGGAACAGATACTTGAGCTCAGAATGTCTGGCTCACAAACCATACAAAATATTCTTTTAACTCACAACTTTTGGTATCATCCACGGAAAACGCATCATTACATCTTTTGACCACCCATCCAAATAGTCGTTCATACAGTACTTTAGCC</canonical_amplicon>
		<polymorphic_amplicon>GATTGCCAATTGTATTGATTTTGCACAATATGTCAATAAGAAATTTTGATGGTTTGATTCAACAAGTAAACGACAGCAAATGTTTCGTCATTCTTTTCAGGAACAGATACTYGAGCTCAGAATGTCTGGCTCACAAACCATACAAAATATTCTTTTAACTCACAACTTTTGGTATCATCCACGGAAAACGCATCATTACATCTTTTGACCACCCATCCAAATAGTCGTTCATACAGTACTTTAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36498</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>203693</contig_pos>
        <strand>+</strand>
        <context>TTTCTTTTTT[A/T]ATACTAGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGAAGTTAGCGTCTGAAAAAAGTAAAGGGCTTTTTAATGTTTCTTTTTT</left_flank>
        <right_flank>ATACTAGATTGAAACCTAGTTTTTAAACAGTAAGAATTATCTATCGGGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTCCAAAACAGCAATAAATCGACTGTTTCGGCAATCTGAAATAACAGAGAGGAGATAAGAAAAATTTCAATTTTTCTGACATTTGTAATATTTTTCAAAATTTCAGAATACAAAACAACTAGTTGAAAATTCGACATTCATTTTTTCACTGTTTGTCGCTTTTTATTTATTTTCAGTATTTATAGTCTTCTGATTGCCAATTGTATTGATTTTGCACAATATGTCAATAAGAAATTTTGATGGTTTGATTCAACAAGTAAACGACAGCAAATGTTTCGTCATTCTTTTCAGGAACAGATACTTGAGCTCAGAATGTCTGGCTCACAAACCATACAAAATATTCTTTTAACTCACAACTTTTGGTATCATCCACGGAAAACGCATCATTACATCTTTTGACCACCCATCCAAATAGTCGTTCATACAGTACTTTAGCCATTGCTGAGGCAGAAGTTAGCGTCTGAAAAAAGTAAAGGGCTTTTTAATGTTTCTTTTTTAATACTAGATTGAAACCTAGTTTTTAAACAGTAAGAATTATCTATCGGGATTATTGTACGGTTGGTATTTTTCAGCCAAAAAACTATACAGTATGAAAAATTCTGAAGATTGTGATAATATTTTATTTAGTGTTTCAGCCAATTTTCAGAAACTCGAACGACGGAATTAGAAACTCCTCCGACGTCTGATAGCACTTTTACTAAATCCGTTATCTGATTCGTATACTTTCTACTGGACGTTTTGCAATCGGACGTTTTAGATCTTTTACCTTTGCTAAATTCTGATTTTTCCTGATAAGCTTATCATGAACTTTAATTGTCGGTTGAGTCAATGCATCCACAAGTTTGGAACTTTTCATTTCCAGAAGTTCAGCAATGTTGTCCACTTCTGAAAATTAAATAAAATCTCAACATTTTCTTATAAAAGAGCCACTCTGTTCAGAAAACCATTCCAAAAATCCTCCTGGTCCCTTCTCAAATTTTTGAAAACCTTCACTCATC</canonical>
            <polymorphic>ATGTCCAAAACAGCAATAAATCGACTGTTTCGGCAATCTGAAATAACAGAGAGGAGATAAGAAAAATTTCAATTTTTCTGACATTTGTAATATTTTTCAAAATTTCAGAATACAAAACAACTAGTTGAAAATTCGACATTCATTTTTTCACTGTTTGTCGCTTTTTATTTATTTTCAGTATTTATAGTCTTCTGATTGCCAATTGTATTGATTTTGCACAATATGTCAATAAGAAATTTTGATGGTTTGATTCAACAAGTAAACGACAGCAAATGTTTCGTCATTCTTTTCAGGAACAGATACTTGAGCTCAGAATGTCTGGCTCACAAACCATACAAAATATTCTTTTAACTCACAACTTTTGGTATCATCCACGGAAAACGCATCATTACATCTTTTGACCACCCATCCAAATAGTCGTTCATACAGTACTTTAGCCATTGCTGAGGCAGAAGTTAGCGTCTGAAAAAAGTAAAGGGCTTTTTAATGTTTCTTTTTTWATACTAGATTGAAACCTAGTTTTTAAACAGTAAGAATTATCTATCGGGATTATTGTACGGTTGGTATTTTTCAGCCAAAAAACTATACAGTATGAAAAATTCTGAAGATTGTGATAATATTTTATTTAGTGTTTCAGCCAATTTTCAGAAACTCGAACGACGGAATTAGAAACTCCTCCGACGTCTGATAGCACTTTTACTAAATCCGTTATCTGATTCGTATACTTTCTACTGGACGTTTTGCAATCGGACGTTTTAGATCTTTTACCTTTGCTAAATTCTGATTTTTCCTGATAAGCTTATCATGAACTTTAATTGTCGGTTGAGTCAATGCATCCACAAGTTTGGAACTTTTCATTTCCAGAAGTTCAGCAATGTTGTCCACTTCTGAAAATTAAATAAAATCTCAACATTTTCTTATAAAAGAGCCACTCTGTTCAGAAAACCATTCCAAAAATCCTCCTGGTCCCTTCTCAAATTTTTGAAAACCTTCACTCATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>348 289 136 105 83 25 14</canonical_bands>
                <polymorphic_bands>348 289 136 105 83 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCAAATAGTCGTTCATACAGT</pcr_primer_p1>
		<pcr_primer_p2>AAATTGGCTGAAACACTAAATAA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>ATCCAAATAGTCGTTCATACAGTACTTTAGCCATTGCTGAGGCAGAAGTTAGCGTCTGAAAAAAGTAAAGGGCTTTTTAATGTTTCTTTTTTAATACTAGATTGAAACCTAGTTTTTAAACAGTAAGAATTATCTATCGGGATTATTGTACGGTTGGTATTTTTCAGCCAAAAAACTATACAGTATGAAAAATTCTGAAGATTGTGATAATATTTTATTTAGTGTTTCAGCCAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATCCAAATAGTCGTTCATACAGTACTTTAGCCATTGCTGAGGCAGAAGTTAGCGTCTGAAAAAAGTAAAGGGCTTTTTAATGTTTCTTTTTTWATACTAGATTGAAACCTAGTTTTTAAACAGTAAGAATTATCTATCGGGATTATTGTACGGTTGGTATTTTTCAGCCAAAAAACTATACAGTATGAAAAATTCTGAAGATTGTGATAATATTTTATTTAGTGTTTCAGCCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36499</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>283714</contig_pos>
        <strand>+</strand>
        <context>AATGGATAGG[G/T]AAAAAAAMWW</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGG</left_flank>
        <right_flank>AAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGCTCCTCTCTCTATTTTTTATAGGGTCACGTCAATTTATATTACGGGTTTATTCAGGGAGTCGGCAAAAAAGGAAAAAAAAACTCCGCCAAAACTCGGAGAGTGTTCGAATCTGGCTGAAACTTTGGGGAAAAATGGAGAAAACNNNNNNNNNNACAAATTTTCAAAGTTGATATTTTGACCCCAAACTTTGGCAAGTTTTATCCAGTTTTCCCCAAAGTTTCAGCCAGATTCGAACACTCTCCGAGTTTTGGCGGAGTTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTAAATTTTCAAGATTTTCAAAAATGTGTGGACAAATCCACAGAGAAAGAGACGCAACTTCATTCATTTATTGTAAGAATGATTATCAAAACTATCGATTGATTGATTTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAA</canonical>
            <polymorphic>TCGCTCCTCTCTCTATTTTTTATAGGGTCACGTCAATTTATATTACGGGTTTATTCAGGGAGTCGGCAAAAAAGGAAAAAAAAACTCCGCCAAAACTCGGAGAGTGTTCGAATCTGGCTGAAACTTTGGGGAAAAATGGAGAAAACNNNNNNNNNNACAAATTTTCAAAGTTGATATTTTGACCCCAAACTTTGGCAAGTTTTATCCAGTTTTCCCCAAAGTTTCAGCCAGATTCGAACACTCTCCGAGTTTTGGCGGAGTTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTAAATTTTCAAGATTTTCAAAAATGTGTGGACAAATCCACAGAGAAAGAGACGCAACTTCATTCATTTATTGTAAGAATGATTATCAAAACTATCGATTGATTGATTTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGKAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCGCATTTTTAGAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGATATTTTGTTTGGTTATTACAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGAAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCGCATTTTTAGAGTTTTCAAACTTTCTAGATAAAATTAACTACTTTTCAATTTTTCGGGAGTGGTCAAAAAAAAAAGAATGGATAGGKAAAAAAACAATTTTTCTAACAGTAGTCTCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36500</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>284241</contig_pos>
        <strand>+</strand>
        <context>GTTTTGAAAA[C/G]GCCTGCCACG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAGATACCCGCATTTTCAGTTAAAGGGAGGGGGAGATATGTTTTGAAAA</left_flank>
        <right_flank>GCCTGCCACGAATATTTTTCTTTGTGATTCAAAAAAAGTACAAAAGAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAAAGGGAGGGGGAGATATGTTTTGAAAAGGCCTGCCACGAATATTTTTCTTTGTGATTCAAAAAAAGTACAAAAGAGAATATATAGATGTACAAAAAGAGTAGAGAAAAAGAGCGCAAACACAGAAATGATGACGCGACAGGGGCCGTTTTAAAGGTGAATTGAGAGAGTATGAAGAGATGAGAGAATTAGAGAAGGAAGACTCGTGCCGGTGCTAATGGTGATGAGAGTATTCGGAAGAAGGCCATTTTCAATCGGTTTTAGGAAATTCGAGTATAAAAGAAGGACTTTTTAAGTGGGTCACTAATAAGGAAAGTTTAGTCTTTGACTGTCTTGAAGGTGTGTATGTATTTTTGCTCCTTACACTTCCACTATCGTACCCCTATCCGTCCATGAATGAACATTTGCACCGGCGTAGCTCAGCCAAGTTCAACTTTTCCAGAAAATTATGTTAAAGAATTCCAATAATATTATTTCTGGCATGGTCCAAGTTACGGAAATGAATGTAACGATTTTTACTTTGTAGGATT</canonical>
            <polymorphic>TCCGGCTGAGCTACACGGGCTCATAAATGGTATTATGGTGTAAACATCGATGTGCACTGACACACAAAAATAAAACTTACCCTTTAACACTTCCCGTTTTGAATAGTGTAATAACCAAACAAAATATCAATTTCAACACTTCCATCATGAAAACAGAAGTTGTGGGAAGGAAATGTGTCTGAAAATGAAACTTCTCACATTTCTCAAAATCTCTCTATCTCTCTCACCCTATTCGCTATCCTAACCAAAAACGGCATGGCTGTAGAATGTGCAGTTACAGAGATCATGGAGAGTAGTTGAACGGAGCATACCACTCGGATAATCTGAAATTTTCGAAAATTGGAGTTCAATAGAGCGTACTTGCTGTTTCATTTATTACCGTAATCTTTTGCAACTCATTCCACCGTTCACTATTATTCATTTGATAGAAAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAAAGGGAGGGGGAGATATGTTTTGAAAASGCCTGCCACGAATATTTTTCTTTGTGATTCAAAAAAAGTACAAAAGAGAATATATAGATGTACAAAAAGAGTAGAGAAAAAGAGCGCAAACACAGAAATGATGACGCGACAGGGGCCGTTTTAAAGGTGAATTGAGAGAGTATGAAGAGATGAGAGAATTAGAGAAGGAAGACTCGTGCCGGTGCTAATGGTGATGAGAGTATTCGGAAGAAGGCCATTTTCAATCGGTTTTAGGAAATTCGAGTATAAAAGAAGGACTTTTTAAGTGGGTCACTAATAAGGAAAGTTTAGTCTTTGACTGTCTTGAAGGTGTGTATGTATTTTTGCTCCTTACACTTCCACTATCGTACCCCTATCCGTCCATGAATGAACATTTGCACCGGCGTAGCTCAGCCAAGTTCAACTTTTCCAGAAAATTATGTTAAAGAATTCCAATAATATTATTTCTGGCATGGTCCAAGTTACGGAAATGAATGTAACGATTTTTACTTTGTAGGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGGCCT</site>
                <isoschizomers>
                    <enzyme>AatI</enzyme>
                    <enzyme>Eco147I</enzyme>
                    <enzyme>PceI</enzyme>
                    <enzyme>SseBI</enzyme>
                    <enzyme>StuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 286 114 99</canonical_bands>
                <polymorphic_bands>615 286 99</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>242 240 174 114 107 99 9 5 5 5</canonical_bands>
                <polymorphic_bands>356 240 174 107 99 9 5 5 5</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 286 213</canonical_bands>
                <polymorphic_bands>714 286</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCACTAGGTTTCGAATCAA</pcr_primer_p1>
		<pcr_primer_p2>ACGAGTCTTCCTTCTCTAATTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAAAGGGAGGGGGAGATATGTTTTGAAAAGGCCTGCCACGAATATTTTTCTTTGTGATTCAAAAAAAGTACAAAAGAGAATATATAGATGTACAAAAAGAGTAGAGAAAAAGAGCGCAAACACAGAAATGATGACGCGACAGGGGCCGTTTTAAAGGTGAATTGAGAGAGTATGAAGAGATGAGAGAATTAGAGAAGGAAGACTCGT</canonical_amplicon>
		<polymorphic_amplicon>AAATCACTAGGTTTCGAATCAAAGATACCCGCATTTTCAGTTAAAGGGAGGGGGAGATATGTTTTGAAAASGCCTGCCACGAATATTTTTCTTTGTGATTCAAAAAAAGTACAAAAGAGAATATATAGATGTACAAAAAGAGTAGAGAAAAAGAGCGCAAACACAGAAATGATGACGCGACAGGGGCCGTTTTAAAGGTGAATTGAGAGAGTATGAAGAGATGAGAGAATTAGAGAAGGAAGACTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36501</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>304607</contig_pos>
        <strand>+</strand>
        <context>GTTTGAAGTG[A/G]CTTTCAAGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAAAAACATCCAAAACTTTTTTCTGTTTTATGACGGATGTTTGAAGTG</left_flank>
        <right_flank>CTTTCAAGCATGAGTCCAATTAAAGTTGTCAGTTATGTTTCAAGTGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTGAATTTTAGTAGCGATATTGAGCTGCTTTGTTGAGAATGTTTTCAAATGAATTTTGCAACAATCTCAAGTGGAACTCTGTGAACATCAGTACCATCGCTTAGACCTTGATACGGTACGCCAATAGGGTGATTAATTTTGTACGAATATTGACATTCAGAGTTTCTTTCTTCATATGATTAATGAATAATTGCCAATATAACTTCCCTGATAAATTTATAAAAACTTGTGAAACCGAGATTTTTCCCGCCACTTACCACCCCCTTCTTCCACTTGATGTAGTCACTGTAAGAGACTAATTTTGGCGTATTTCCTTCTTCATAAAGAATCGTTAGCAATTTTTCCTCGGCGAACTTCAAAACTCCTTCCTCTCCATCTCTTTCGTAAATGTTGATAAGTTCTCCGCCTGGAACGAAATGTTTAAATTATTTTTGAAAAATCTAGGTGAGAAAAAACATCCAAAACTTTTTTCTGTTTTATGACGGATGTTTGAAGTGACTTTCAAGCATGAGTCCAATTAAAGTTGTCAGTTATGTTTCAAGTGAAAATGTTAAAACAAGGGCAGTGGCTCATGCTATTGGCAATCGGTCCTGGTCTAAGGGGAGGCAATTGGACATGGTACAGTTTGGGACCGCGTAGCTTGTGTTACTGGTTAATATTGTGTTCGCTAGCTCAGGGGCTACAATAGACAAAAGAGGAGCTATGCGGTCTAGCTGAGCTAAGCGGTCACTTTAAAATCACAACGACAATAAACAACCCAATCCGAGAGTTTCTTTTTTTTCCCAAAATGCTAGAAAACCTGGTATTTGAAAAATTGAAACCCCAAAATAATATTTTCTGTTCTCCAGTTTCCATGTAATCAGCAAAAAATCCGGAAAGTTAGTTGTATCGCAAGACAAAGGTCTCACCTTTCCTGACACCAACCCACTTGTACAAGTGATTCTTCTCTCGTTCTCGATACAAATTCGACCATTTCTCGTCGGGATCGAACGCGAGTT</canonical>
            <polymorphic>TGGTGAATTTTAGTAGCGATATTGAGCTGCTTTGTTGAGAATGTTTTCAAATGAATTTTGCAACAATCTCAAGTGGAACTCTGTGAACATCAGTACCATCGCTTAGACCTTGATACGGTACGCCAATAGGGTGATTAATTTTGTACGAATATTGACATTCAGAGTTTCTTTCTTCATATGATTAATGAATAATTGCCAATATAACTTCCCTGATAAATTTATAAAAACTTGTGAAACCGAGATTTTTCCCGCCACTTACCACCCCCTTCTTCCACTTGATGTAGTCACTGTAAGAGACTAATTTTGGCGTATTTCCTTCTTCATAAAGAATCGTTAGCAATTTTTCCTCGGCGAACTTCAAAACTCCTTCCTCTCCATCTCTTTCGTAAATGTTGATAAGTTCTCCGCCTGGAACGAAATGTTTAAATTATTTTTGAAAAATCTAGGTGAGAAAAAACATCCAAAACTTTTTTCTGTTTTATGACGGATGTTTGAAGTGRCTTTCAAGCATGAGTCCAATTAAAGTTGTCAGTTATGTTTCAAGTGAAAATGTTAAAACAAGGGCAGTGGCTCATGCTATTGGCAATCGGTCCTGGTCTAAGGGGAGGCAATTGGACATGGTACAGTTTGGGACCGCGTAGCTTGTGTTACTGGTTAATATTGTGTTCGCTAGCTCAGGGGCTACAATAGACAAAAGAGGAGCTATGCGGTCTAGCTGAGCTAAGCGGTCACTTTAAAATCACAACGACAATAAACAACCCAATCCGAGAGTTTCTTTTTTTTCCCAAAATGCTAGAAAACCTGGTATTTGAAAAATTGAAACCCCAAAATAATATTTTCTGTTCTCCAGTTTCCATGTAATCAGCAAAAAATCCGGAAAGTTAGTTGTATCGCAAGACAAAGGTCTCACCTTTCCTGACACCAACCCACTTGTACAAGTGATTCTTCTCTCGTTCTCGATACAAATTCGACCATTTCTCGTCGGGATCGAACGCGAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>283 273 213 150 81</canonical_bands>
                <polymorphic_bands>363 283 273 81</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>283 273 231 213</canonical_bands>
                <polymorphic_bands>444 283 273</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAAAAATCTAGGTGAGAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGCTAGCGAACACAATATTAAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAAAAATCTAGGTGAGAAAAAACATCCAAAACTTTTTTCTGTTTTATGACGGATGTTTGAAGTGACTTTCAAGCATGAGTCCAATTAAAGTTGTCAGTTATGTTTCAAGTGAAAATGTTAAAACAAGGGCAGTGGCTCATGCTATTGGCAATCGGTCCTGGTCTAAGGGGAGGCAATTGGACATGGTACAGTTTGGGACCGCGTAGCTTGTGTTACTGGTTAATATTGTGTTCGCTAGCTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAAAAATCTAGGTGAGAAAAAACATCCAAAACTTTTTTCTGTTTTATGACGGATGTTTGAAGTGRCTTTCAAGCATGAGTCCAATTAAAGTTGTCAGTTATGTTTCAAGTGAAAATGTTAAAACAAGGGCAGTGGCTCATGCTATTGGCAATCGGTCCTGGTCTAAGGGGAGGCAATTGGACATGGTACAGTTTGGGACCGCGTAGCTTGTGTTACTGGTTAATATTGTGTTCGCTAGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36502</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>309548</contig_pos>
        <strand></strand>
        <context>TGGATCAGTA[T/A]TTTCCAACCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ACATAAGTACAAAATAAATACAATAACCTTCTGATTTCTCTGGATCAGTA</left_flank>
        <right_flank>TTTCCAACCATTTTTGTAGTAGTATTCACATCTCTACATTCAGTCGTTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAAACATCTCAAAACCTCAAAGCCGTAAAAAGTAGTGGGACATTGAAACGGAAATTCATTGTAAAAACTGCATGATTTTCCTTTTCTGTTTCTAATTCGTGATTTCGAAAACTGTCGATGTTCAGCAGTCATTTGTGACTAACAATTGTTGCGTCGAACATTCAATGTTTCTAAGAAGGATCAGTTGTAGAAGTTGCTTAATTGAAGAATACACAATTTTTTCCGTTTCAAAGTAGCCATACAAGCTAGCCATGTGGTGAACAACTTTGGTGGTTTGTTTAAAAATCCTACTTGTTTTATTCTTTGGTTTGACAACTCTAATAGTCAAGCCAATGAATAATTTTTCTTTGGAAATTTTCGAACAGATGAGCTTTTTTAAACTATGATTTTTGATAAAGAAAATTAGAAGCCAAGTAAAGATAAAAAGTCCATGTACTTTCCTAAAAGTACATAAGTACAAAATAAATACAATAACCTTCTGATTTCTCTGGATCAGTATTTTCCAACCATTTTTGTAGTAGTATTCACATCTCTACATTCAGTCGTTTTGTCGATTTTATATGATTTCATTGAAAAAAATTTACCGCATCCAAAGAGTAACAATCTAATGTTTATAATTTCCAAATTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTTCGTTCAAAGATGCCCCTCAAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGAACGCCCGATTGCATACATAAAGGCAAGGACGACAGCTGTACGCTGAGTGACATTTAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGACATAATGAAACACATGAAACAGTAATATTGAGTAGTAAAACTGTAACATACCGTAAACACTCTGATATAAAATGCTCCTCAAGCAGTCGATTAC</canonical>
            <polymorphic>CTAAACATCTCAAAACCTCAAAGCCGTAAAAAGTAGTGGGACATTGAAACGGAAATTCATTGTAAAAACTGCATGATTTTCCTTTTCTGTTTCTAATTCGTGATTTCGAAAACTGTCGATGTTCAGCAGTCATTTGTGACTAACAATTGTTGCGTCGAACATTCAATGTTTCTAAGAAGGATCAGTTGTAGAAGTTGCTTAATTGAAGAATACACAATTTTTTCCGTTTCAAAGTAGCCATACAAGCTAGCCATGTGGTGAACAACTTTGGTGGTTTGTTTAAAAATCCTACTTGTTTTATTCTTTGGTTTGACAACTCTAATAGTCAAGCCAATGAATAATTTTTCTTTGGAAATTTTCGAACAGATGAGCTTTTTTAAACTATGATTTTTGATAAAGAAAATTAGAAGCCAAGTAAAGATAAAAAGTCCATGTACTTTCCTAAAAGTACATAAGTACAAAATAAATACAATAACCTTCTGATTTCTCTGGATCAGTAWTTTCCAACCATTTTTGTAGTAGTATTCACATCTCTACATTCAGTCGTTTTGTCGATTTTATATGATTTCATTGAAAAAAATTTACCGCATCCAAAGAGTAACAATCTAATGTTTATAATTTCCAAATTTTAAAGGTGGGGGGACATGAAAAAAATAATGTTCTCGAAATTTCGTTCAAAGATGCCCCTCAAGGAGTTGAACTTGTGAGGGCGATGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGAACGCCCGATTGCATACATAAAGGCAAGGACGACAGCTGTACGCTGAGTGACATTTAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGGACATAATGAAACACATGAAACAGTAATATTGAGTAGTAAAACTGTAACATACCGTAAACACTCTGATATAAAATGCTCCTCAAGCAGTCGATTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTCTAATAGTCAAGCCAATGA</pcr_primer_p1>
		<pcr_primer_p2>ATATAAAATCGACAAAACGACTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACTCTAATAGTCAAGCCAATGAATAATTTTTCTTTGGAAATTTTCGAACAGATGAGCTTTTTTAAACTATGATTTTTGATAAAGAAAATTAGAAGCCAAGTAAAGATAAAAAGTCCATGTACTTTCCTAAAAGTACATAAGTACAAAATAAATACAATAACCTTCTGATTTCTCTGGATCAGTATTTTCCAACCATTTTTGTAGTAGTATTCACATCTCTACATTCAGTCGTTTTGTCGATTTTATAT</canonical_amplicon>
		<polymorphic_amplicon>AACTCTAATAGTCAAGCCAATGAATAATTTTTCTTTGGAAATTTTCGAACAGATGAGCTTTTTTAAACTATGATTTTTGATAAAGAAAATTAGAAGCCAAGTAAAGATAAAAAGTCCATGTACTTTCCTAAAAGTACATAAGTACAAAATAAATACAATAACCTTCTGATTTCTCTGGATCAGTAWTTTCCAACCATTTTTGTAGTAGTATTCACATCTCTACATTCAGTCGTTTTGTCGATTTTATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36503</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>336401</contig_pos>
        <strand>+</strand>
        <context>CACACAAGGA[A/T]GTGTTATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGCATCTTATGCCAAAATTGACATTTTCTTATAAACGATCCACACAAGGA</left_flank>
        <right_flank>GTGTTATTTTCCTTCCTATCTAATTTTTTTTCGGTTTCTTCAGTTTTAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTTTATGTAAATCTGAACACCAATTAATATACCGTGAAAAATATTATGAATGAAAAAATATCTCGTCATACAAACAAAGCTGAAAATTTTCTCAGTTTCAGAAATGGCTTAATTCTGTGAAACTTCATTGTGGAATTTAATTCCATAATCAATTATTAGTCTTGTAAGAAATCGGTTCCTGTTGGAGCTGTAAAGAACATCGAATACCGTAATCCTTATATAAATATCCGTGTCTTTAAGCTACATATTATTAAAACAATTTTGCCTATTTTTCTAACTTTTTGGACAATTTTTTTAGGTTTTTTGTTGAATATTTCGAAAAATCAAATAAAATATTTCGAAAAATCAAATAAAATATTTCGAAAAACCAAATAATTAAAAAATTAAAGACGCATGAATTCGTAGTACATACTACGGTAATCCCTGCTTTTTTCGTCGCTGTGTGGACTGCATCTTATGCCAAAATTGACATTTTCTTATAAACGATCCACACAAGGAAGTGTTATTTTCCTTCCTATCTAATTTTTTTTCGGTTTCTTCAGTTTTAGATAGTTTTCCGGATTTTTTGCGAATTCATTCCTCTGCAGTATTCGTAGAAATGATGTCATCATGCCTTTATTCACTTTGTATAGATCTTAAAAATACCCTTAAAAATACCTGAACCTTGCAAATTTCTATACGAAATCACACACTCTTTTTTCTCTCCCATCATTTTTTTCTCCAAAAAAAAAATATATTTCCTTATTAAGATTCTTTTTATATATGCATATCCTTTCTCATTTTTTTCTAATCCTATCCATATATCTGGTTAGTCATATTCCCTGTTCCAACGAGATCATCTCATTTCCTATTTTTCAGAAGACAACCTCATTTTGTAATTGTGCTTTTTTTTACGTCTTTGAGATACAATGTACATGATTAAGATTGAAGCATCAGATTGAAGCGGAAGATACTAATAGAAACAAATAGTACAATTTTAATGGGTTCAAAAGGTTCAAA</canonical>
            <polymorphic>CGTTTATGTAAATCTGAACACCAATTAATATACCGTGAAAAATATTATGAATGAAAAAATATCTCGTCATACAAACAAAGCTGAAAATTTTCTCAGTTTCAGAAATGGCTTAATTCTGTGAAACTTCATTGTGGAATTTAATTCCATAATCAATTATTAGTCTTGTAAGAAATCGGTTCCTGTTGGAGCTGTAAAGAACATCGAATACCGTAATCCTTATATAAATATCCGTGTCTTTAAGCTACATATTATTAAAACAATTTTGCCTATTTTTCTAACTTTTTGGACAATTTTTTTAGGTTTTTTGTTGAATATTTCGAAAAATCAAATAAAATATTTCGAAAAATCAAATAAAATATTTCGAAAAACCAAATAATTAAAAAATTAAAGACGCATGAATTCGTAGTACATACTACGGTAATCCCTGCTTTTTTCGTCGCTGTGTGGACTGCATCTTATGCCAAAATTGACATTTTCTTATAAACGATCCACACAAGGAWGTGTTATTTTCCTTCCTATCTAATTTTTTTTCGGTTTCTTCAGTTTTAGATAGTTTTCCGGATTTTTTGCGAATTCATTCCTCTGCAGTATTCGTAGAAATGATGTCATCATGCCTTTATTCACTTTGTATAGATCTTAAAAATACCCTTAAAAATACCTGAACCTTGCAAATTTCTATACGAAATCACACACTCTTTTTTCTCTCCCATCATTTTTTTCTCCAAAAAAAAAATATATTTCCTTATTAAGATTCTTTTTATATATGCATATCCTTTCTCATTTTTTTCTAATCCTATCCATATATCTGGTTAGTCATATTCCCTGTTCCAACGAGATCATCTCATTTCCTATTTTTCAGAAGACAACCTCATTTTGTAATTGTGCTTTTTTTTACGTCTTTGAGATACAATGTACATGATTAAGATTGAAGCATCAGATTGAAGCGGAAGATACTAATAGAAACAAATAGTACAATTTTAATGGGTTCAAAAGGTTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGACGCATGAATTCGTAGTA</pcr_primer_p1>
		<pcr_primer_p2>ATACAAAGTGAATAAAGGCATGA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAGACGCATGAATTCGTAGTACATACTACGGTAATCCCTGCTTTTTTCGTCGCTGTGTGGACTGCATCTTATGCCAAAATTGACATTTTCTTATAAACGATCCACACAAGGAAGTGTTATTTTCCTTCCTATCTAATTTTTTTTCGGTTTCTTCAGTTTTAGATAGTTTTCCGGATTTTTTGCGAATTCATTCCTCTGCAGTATTCGTAGAAATGATGTCATCATGCCTTTATTCACTTTGTAT</canonical_amplicon>
		<polymorphic_amplicon>AAGACGCATGAATTCGTAGTACATACTACGGTAATCCCTGCTTTTTTCGTCGCTGTGTGGACTGCATCTTATGCCAAAATTGACATTTTCTTATAAACGATCCACACAAGGAWGTGTTATTTTCCTTCCTATCTAATTTTTTTTCGGTTTCTTCAGTTTTAGATAGTTTTCCGGATTTTTTGCGAATTCATTCCTCTGCAGTATTCGTAGAAATGATGTCATCATGCCTTTATTCACTTTGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36504</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>357395</contig_pos>
        <strand>+</strand>
        <context>GCTCAACGTC[A/G]TCRAGAGAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACTCGACGCTCTCTCGTTCCGGACCAACGCATCGTAGAGCTCAACGTC</left_flank>
        <right_flank>TCGAGAGAGTCGGTCCGTGGCAAGCAGCAGCTCTGGAAAAAAGTCTAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAAAGTGGCCTAGAAATAGCCTGAAATTCACCTGGTGTTTTCTAGGTCATTCTAACGTGGTGGACTAGAAAACTCATCATGCAAAAGTTAGGCCACCACGTCAAAATGACCTAGAATTGGCCTGATATCCACCTGGTGTTTTCTAGGCCATTTTGAAATGGTGGCCTAGAAAACCCCAACTTGCAAAAATTAGGCCCCTTTTTAAAATGTCTCAAAAATCGAGAAATTCTTGAGAAAATTTTCTAATTTTGAATTAAACAGAAACCGCGCTCTATTGACAAAACGCTCCATACTGTGTCTAGTGGAGCGAAGTTGCACCCCTAGCTTATCAATAAAACACATTTTTACCTTGTTGGCCACCGAAACCGACATCGACCGTCCATAATTAAGACGTCGGGTACCTAGTGGAGTGGTGGATACTGTAGGTGTTGGACGTGTTGGAGCCGAGAAACTCGACGCTCTCTCGTTCCGGACCAACGCATCGTAGAGCTCAACGTCATCGAGAGAGTCGGTCCGTGGCAAGCAGCAGCTCTGGAAAAAAGTCTAAATTTTGAAAAAATCAAAAATTTGGAATCTTTTGAAAAATCTGAAAATCTGAATTTACCTGCGCCGTGCTTCCGAATCTCGAAAACGACGGAAGACGTTGTCTGGGTGCCTCCTCCACAACCGCTTCTACAGATTGCTCATCGTTAATCGAGATGGTGTTGATGGACATTGTCGCCAGATTGATCGAGTGAGCACTTTGGGAGTGGAAGCGAGCTGGAAAAACATGATTTCAGCATGGTGGCCTAATTTTTGATTTTTCTAGGCCACTATGTTATTTGGCCTAGAAATGACCTGGTGTGTTTTCTAGGCCATGTTGAGAAGGTGTCCTAGAAAACTTGACATGCAAAAGTTAGGCTTTTTCTGGGCAATTTTGACAGAATGGCCTAACTTTCTCAACATGATTTTTCTAGGCCACCACGGTTAATGATCTAGAAAAAACACCAGGTGGATATG</canonical>
            <polymorphic>GTAAAGTGGCCTAGAAATAGCCTGAAATTCACCTGGTGTTTTCTAGGTCATTCTAACGTGGTGGACTAGAAAACTCATCATGCAAAAGTTAGGCCACCACGTCAAAATGACCTAGAATTGGCCTGATATCCACCTGGTGTTTTCTAGGCCATTTTGAAATGGTGGCCTAGAAAACCCCAACTTGCAAAAATTAGGCCCCTTTTTAAAATGTCTCAAAAATCGAGAAATTCTTGAGAAAATTTTCTAATTTTGAATTAAACAGAAACCGCGCTCTATTGACAAAACGCTCCATACTGTGTCTAGTGGAGCGAAGTTGCACCCCTAGCTTATCAATAAAACACATTTTTACCTTGTTGGCCACCGAAACCGACATCGACCGTCCATAATTAAGACGTCGGGTACCTAGTGGAGTGGTGGATACTGTAGGTGTTGGACGTGTTGGAGCCGAGAAACTCGACGCTCTCTCGTTCCGGACCAACGCATCGTAGAGCTCAACGTCRTCGAGAGAGTCGGTCCGTGGCAAGCAGCAGCTCTGGAAAAAAGTCTAAATTTTGAAAAAATCAAAAATTTGGAATCTTTTGAAAAATCTGAAAATCTGAATTTACCTGCGCCGTGCTTCCGAATCTCGAAAACGACGGAAGACGTTGTCTGGGTGCCTCCTCCACAACCGCTTCTACAGATTGCTCATCGTTAATCGAGATGGTGTTGATGGACATTGTCGCCAGATTGATCGAGTGAGCACTTTGGGAGTGGAAGCGAGCTGGAAAAACATGATTTCAGCATGGTGGCCTAATTTTTGATTTTTCTAGGCCACTATGTTATTTGGCCTAGAAATGACCTGGTGTGTTTTCTAGGCCATGTTGAGAAGGTGTCCTAGAAAACTTGACATGCAAAAGTTAGGCTTTTTCTGGGCAATTTTGACAGAATGGCCTAACTTTCTCAACATGATTTTTCTAGGCCACCACGGTTAATGATCTAGAAAAAACACCAGGTGGATATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATAAAACACATTTTTACCTTGT</pcr_primer_p1>
		<pcr_primer_p2>AGATTTTTCAAAAGATTCCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>CAATAAAACACATTTTTACCTTGTTGGCCACCGAAACCGACATCGACCGTCCATAATTAAGACGTCGGGTACCTAGTGGAGTGGTGGATACTGTAGGTGTTGGACGTGTTGGAGCCGAGAAACTCGACGCTCTCTCGTTCCGGACCAACGCATCGTAGAGCTCAACGTCATCGAGAGAGTCGGTCCGTGGCAAGCAGCAGCTCTGGAAAAAAGTCTAAATTTTGAAAAAATCAAAAATTTGGAATCTTTTGAAAAATCT</canonical_amplicon>
		<polymorphic_amplicon>CAATAAAACACATTTTTACCTTGTTGGCCACCGAAACCGACATCGACCGTCCATAATTAAGACGTCGGGTACCTAGTGGAGTGGTGGATACTGTAGGTGTTGGACGTGTTGGAGCCGAGAAACTCGACGCTCTCTCGTTCCGGACCAACGCATCGTAGAGCTCAACGTCRTCGAGAGAGTCGGTCCGTGGCAAGCAGCAGCTCTGGAAAAAAGTCTAAATTTTGAAAAAATCAAAAATTTGGAATCTTTTGAAAAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36505</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>357398</contig_pos>
        <strand>+</strand>
        <context>CAACGTCRTC[A/G]AGAGAGTCGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCGACGCTCTCTCGTTCCGGACCAACGCATCGTAGAGCTCAACGTCATC</left_flank>
        <right_flank>AGAGAGTCGGTCCGTGGCAAGCAGCAGCTCTGGAAAAAAGTCTAAATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTGGCCTAGAAATAGCCTGAAATTCACCTGGTGTTTTCTAGGTCATTCTAACGTGGTGGACTAGAAAACTCATCATGCAAAAGTTAGGCCACCACGTCAAAATGACCTAGAATTGGCCTGATATCCACCTGGTGTTTTCTAGGCCATTTTGAAATGGTGGCCTAGAAAACCCCAACTTGCAAAAATTAGGCCCCTTTTTAAAATGTCTCAAAAATCGAGAAATTCTTGAGAAAATTTTCTAATTTTGAATTAAACAGAAACCGCGCTCTATTGACAAAACGCTCCATACTGTGTCTAGTGGAGCGAAGTTGCACCCCTAGCTTATCAATAAAACACATTTTTACCTTGTTGGCCACCGAAACCGACATCGACCGTCCATAATTAAGACGTCGGGTACCTAGTGGAGTGGTGGATACTGTAGGTGTTGGACGTGTTGGAGCCGAGAAACTCGACGCTCTCTCGTTCCGGACCAACGCATCGTAGAGCTCAACGTCATCGAGAGAGTCGGTCCGTGGCAAGCAGCAGCTCTGGAAAAAAGTCTAAATTTTGAAAAAATCAAAAATTTGGAATCTTTTGAAAAATCTGAAAATCTGAATTTACCTGCGCCGTGCTTCCGAATCTCGAAAACGACGGAAGACGTTGTCTGGGTGCCTCCTCCACAACCGCTTCTACAGATTGCTCATCGTTAATCGAGATGGTGTTGATGGACATTGTCGCCAGATTGATCGAGTGAGCACTTTGGGAGTGGAAGCGAGCTGGAAAAACATGATTTCAGCATGGTGGCCTAATTTTTGATTTTTCTAGGCCACTATGTTATTTGGCCTAGAAATGACCTGGTGTGTTTTCTAGGCCATGTTGAGAAGGTGTCCTAGAAAACTTGACATGCAAAAGTTAGGCTTTTTCTGGGCAATTTTGACAGAATGGCCTAACTTTCTCAACATGATTTTTCTAGGCCACCACGGTTAATGATCTAGAAAAAACACCAGGTGGATATGAGG</canonical>
            <polymorphic>AAGTGGCCTAGAAATAGCCTGAAATTCACCTGGTGTTTTCTAGGTCATTCTAACGTGGTGGACTAGAAAACTCATCATGCAAAAGTTAGGCCACCACGTCAAAATGACCTAGAATTGGCCTGATATCCACCTGGTGTTTTCTAGGCCATTTTGAAATGGTGGCCTAGAAAACCCCAACTTGCAAAAATTAGGCCCCTTTTTAAAATGTCTCAAAAATCGAGAAATTCTTGAGAAAATTTTCTAATTTTGAATTAAACAGAAACCGCGCTCTATTGACAAAACGCTCCATACTGTGTCTAGTGGAGCGAAGTTGCACCCCTAGCTTATCAATAAAACACATTTTTACCTTGTTGGCCACCGAAACCGACATCGACCGTCCATAATTAAGACGTCGGGTACCTAGTGGAGTGGTGGATACTGTAGGTGTTGGACGTGTTGGAGCCGAGAAACTCGACGCTCTCTCGTTCCGGACCAACGCATCGTAGAGCTCAACGTCATCRAGAGAGTCGGTCCGTGGCAAGCAGCAGCTCTGGAAAAAAGTCTAAATTTTGAAAAAATCAAAAATTTGGAATCTTTTGAAAAATCTGAAAATCTGAATTTACCTGCGCCGTGCTTCCGAATCTCGAAAACGACGGAAGACGTTGTCTGGGTGCCTCCTCCACAACCGCTTCTACAGATTGCTCATCGTTAATCGAGATGGTGTTGATGGACATTGTCGCCAGATTGATCGAGTGAGCACTTTGGGAGTGGAAGCGAGCTGGAAAAACATGATTTCAGCATGGTGGCCTAATTTTTGATTTTTCTAGGCCACTATGTTATTTGGCCTAGAAATGACCTGGTGTGTTTTCTAGGCCATGTTGAGAAGGTGTCCTAGAAAACTTGACATGCAAAAGTTAGGCTTTTTCTGGGCAATTTTGACAGAATGGCCTAACTTTCTCAACATGATTTTTCTAGGCCACCACGGTTAATGATCTAGAAAAAACACCAGGTGGATATGAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>271 218 153 125 81 69 47 36</canonical_bands>
                <polymorphic_bands>271 218 172 153 81 69 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATAAAACACATTTTTACCTTGT</pcr_primer_p1>
		<pcr_primer_p2>AGATTTTTCAAAAGATTCCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>CAATAAAACACATTTTTACCTTGTTGGCCACCGAAACCGACATCGACCGTCCATAATTAAGACGTCGGGTACCTAGTGGAGTGGTGGATACTGTAGGTGTTGGACGTGTTGGAGCCGAGAAACTCGACGCTCTCTCGTTCCGGACCAACGCATCGTAGAGCTCAACGTCATCGAGAGAGTCGGTCCGTGGCAAGCAGCAGCTCTGGAAAAAAGTCTAAATTTTGAAAAAATCAAAAATTTGGAATCTTTTGAAAAATCT</canonical_amplicon>
		<polymorphic_amplicon>CAATAAAACACATTTTTACCTTGTTGGCCACCGAAACCGACATCGACCGTCCATAATTAAGACGTCGGGTACCTAGTGGAGTGGTGGATACTGTAGGTGTTGGACGTGTTGGAGCCGAGAAACTCGACGCTCTCTCGTTCCGGACCAACGCATCGTAGAGCTCAACGTCATCRAGAGAGTCGGTCCGTGGCAAGCAGCAGCTCTGGAAAAAAGTCTAAATTTTGAAAAAATCAAAAATTTGGAATCTTTTGAAAAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36512</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>373002</contig_pos>
        <strand>+</strand>
        <context>GGAATTGAGA[G/T]GAGCTTTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGCACGAGCCAGTTCCACAATTTGGCCAAAAGGTTTCCAGGAATTGAGA</left_flank>
        <right_flank>GAGCTTTCCAAATGGCACAATGACGAACACATTGACGGCGGCGAAGAATC</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATGTATCTAGTAAATCGCGAATGAGTTCTATTTTCCCTATTCTACAGTATCCAAAGTGTATCCAAAGTGTATATAAATATCTGCCCGATTGTTGATCCCCTCACCACCATCGCAATGTGTGTATATCCACTCTAAATGAGGTGTCCTATTGCACTTAGCACCCCCACCCCTAATAAAACAAAGAACGAACATATCCGAGATTTGAATGTTATAGTCACATTTATTACTTTTTCTTAAGTCATTTCATTTTACATCAAGAATGATAACAAGAGAGACCAATGGGGTACAAAGACAGGGGGAAGAAGACAGGGGGAGGAAAATAATTTAAAGGGACATATGGGAATTTAGACACATGGTGCAGTGGTTTCCTGGTTGATACCGTACTTTCTGATGTTGAAGTTGGAGAAGATGAGTCCGACGGCCGAGGCGACTGGATCGAAGACAGCGTGCACGAGCCAGTTCCACAATTTGGCCAAAAGGTTTCCAGGAATTGAGATGAGCTTTCCAAATGGCACAATGACGAACACATTGACGGCGGCGAAGAATCCAAAGAAGATGGCGAAGAGAAGTGTGAATGGAAGAGCCAGGATTGTGAAGAAACGGTAGACGAACAGGCGAACCCAGTTGAAGACACTGGCGTTGAGACGCCACATGAATTCCCAAGTGTGTTGAGAGTCGGCCTCGCCGAAGATGTCGTCAAAGTTGTGCTGGACGTGGTTGTTGAGTCCATTGTGGTCGCGGTTGACAAAGTCCATGCCGATGGCGATGTGGTCTTCCTGGAAGGAAAAAAATTGGTTAGTTGGTTTATCTAGGTGGGTATAGGTGAGTCTAGATGAGTCTAGATAAGTTTAGGTGGGTCTAAGAAAATCTAAATAGGTTTAGAAAGGTTTAGAAAGGTTTTAAAGGGTCTAGAGGGAAGCGAATACTAGCCTAGATGGGTTAAGCTAGCTCATATGAGTCTAGACAAAGTTAGAAAGGTCTACAACAATAAAACATG</canonical>
            <polymorphic>TTTATGTATCTAGTAAATCGCGAATGAGTTCTATTTTCCCTATTCTACAGTATCCAAAGTGTATCCAAAGTGTATATAAATATCTGCCCGATTGTTGATCCCCTCACCACCATCGCAATGTGTGTATATCCACTCTAAATGAGGTGTCCTATTGCACTTAGCACCCCCACCCCTAATAAAACAAAGAACGAACATATCCGAGATTTGAATGTTATAGTCACATTTATTACTTTTTCTTAAGTCATTTCATTTTACATCAAGAATGATAACAAGAGAGACCAATGGGGTACAAAGACAGGGGGAAGAAGACAGGGGGAGGAAAATAATTTAAAGGGACATATGGGAATTTAGACACATGGTGCAGTGGTTTCCTGGTTGATACCGTACTTTCTGATGTTGAAGTTGGAGAAGATGAGTCCGACGGCCGAGGCGACTGGATCGAAGACAGCGTGCACGAGCCAGTTCCACAATTTGGCCAAAAGGTTTCCAGGAATTGAGAKGAGCTTTCCAAATGGCACAATGACGAACACATTGACGGCGGCGAAGAATCCAAAGAAGATGGCGAAGAGAAGTGTGAATGGAAGAGCCAGGATTGTGAAGAAACGGTAGACGAACAGGCGAACCCAGTTGAAGACACTGGCGTTGAGACGCCACATGAATTCCCAAGTGTGTTGAGAGTCGGCCTCGCCGAAGATGTCGTCAAAGTTGTGCTGGACGTGGTTGTTGAGTCCATTGTGGTCGCGGTTGACAAAGTCCATGCCGATGGCGATGTGGTCTTCCTGGAAGGAAAAAAATTGGTTAGTTGGTTTATCTAGGTGGGTATAGGTGAGTCTAGATGAGTCTAGATAAGTTTAGGTGGGTCTAAGAAAATCTAAATAGGTTTAGAAAGGTTTAGAAAGGTTTTAAAGGGTCTAGAGGGAAGCGAATACTAGCCTAGATGGGTTAAGCTAGCTCATATGAGTCTAGACAAAGTTAGAAAGGTCTACAACAATAAAACATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACATATGGGAATTTAGACACAT</pcr_primer_p1>
		<pcr_primer_p2>CTCTTCCATTCACACTTCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GACATATGGGAATTTAGACACATGGTGCAGTGGTTTCCTGGTTGATACCGTACTTTCTGATGTTGAAGTTGGAGAAGATGAGTCCGACGGCCGAGGCGACTGGATCGAAGACAGCGTGCACGAGCCAGTTCCACAATTTGGCCAAAAGGTTTCCAGGAATTGAGATGAGCTTTCCAAATGGCACAATGACGAACACATTGACGGCGGCGAAGAATCCAAAGAAGATGGCGAAGAGAAGTGTGAATGGAAGAG</canonical_amplicon>
		<polymorphic_amplicon>GACATATGGGAATTTAGACACATGGTGCAGTGGTTTCCTGGTTGATACCGTACTTTCTGATGTTGAAGTTGGAGAAGATGAGTCCGACGGCCGAGGCGACTGGATCGAAGACAGCGTGCACGAGCCAGTTCCACAATTTGGCCAAAAGGTTTCCAGGAATTGAGAKGAGCTTTCCAAATGGCACAATGACGAACACATTGACGGCGGCGAAGAATCCAAAGAAGATGGCGAAGAGAAGTGTGAATGGAAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36513</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>373033</contig_pos>
        <strand>+</strand>
        <context>TGACGAACAC[A/G]TTGACGGCGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGTTTCCAGGAATTGAGATGAGCTTTCCAAATGGCACAATGACGAACAC</left_flank>
        <right_flank>TTGACGGCGGCGAAGAATCCAAAGAAGATGGCGAAGAGAAGTGTGAATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTTCCCTATTCTACAGTATCCAAAGTGTATCCAAAGTGTATATAAATATCTGCCCGATTGTTGATCCCCTCACCACCATCGCAATGTGTGTATATCCACTCTAAATGAGGTGTCCTATTGCACTTAGCACCCCCACCCCTAATAAAACAAAGAACGAACATATCCGAGATTTGAATGTTATAGTCACATTTATTACTTTTTCTTAAGTCATTTCATTTTACATCAAGAATGATAACAAGAGAGACCAATGGGGTACAAAGACAGGGGGAAGAAGACAGGGGGAGGAAAATAATTTAAAGGGACATATGGGAATTTAGACACATGGTGCAGTGGTTTCCTGGTTGATACCGTACTTTCTGATGTTGAAGTTGGAGAAGATGAGTCCGACGGCCGAGGCGACTGGATCGAAGACAGCGTGCACGAGCCAGTTCCACAATTTGGCCAAAAGGTTTCCAGGAATTGAGATGAGCTTTCCAAATGGCACAATGACGAACACATTGACGGCGGCGAAGAATCCAAAGAAGATGGCGAAGAGAAGTGTGAATGGAAGAGCCAGGATTGTGAAGAAACGGTAGACGAACAGGCGAACCCAGTTGAAGACACTGGCGTTGAGACGCCACATGAATTCCCAAGTGTGTTGAGAGTCGGCCTCGCCGAAGATGTCGTCAAAGTTGTGCTGGACGTGGTTGTTGAGTCCATTGTGGTCGCGGTTGACAAAGTCCATGCCGATGGCGATGTGGTCTTCCTGGAAGGAAAAAAATTGGTTAGTTGGTTTATCTAGGTGGGTATAGGTGAGTCTAGATGAGTCTAGATAAGTTTAGGTGGGTCTAAGAAAATCTAAATAGGTTTAGAAAGGTTTAGAAAGGTTTTAAAGGGTCTAGAGGGAAGCGAATACTAGCCTAGATGGGTTAAGCTAGCTCATATGAGTCTAGACAAAGTTAGAAAGGTCTACAACAATAAAACATGGAACTGAAAAGGTCTGGAATGGTGCGAAAAG</canonical>
            <polymorphic>TATTTTCCCTATTCTACAGTATCCAAAGTGTATCCAAAGTGTATATAAATATCTGCCCGATTGTTGATCCCCTCACCACCATCGCAATGTGTGTATATCCACTCTAAATGAGGTGTCCTATTGCACTTAGCACCCCCACCCCTAATAAAACAAAGAACGAACATATCCGAGATTTGAATGTTATAGTCACATTTATTACTTTTTCTTAAGTCATTTCATTTTACATCAAGAATGATAACAAGAGAGACCAATGGGGTACAAAGACAGGGGGAAGAAGACAGGGGGAGGAAAATAATTTAAAGGGACATATGGGAATTTAGACACATGGTGCAGTGGTTTCCTGGTTGATACCGTACTTTCTGATGTTGAAGTTGGAGAAGATGAGTCCGACGGCCGAGGCGACTGGATCGAAGACAGCGTGCACGAGCCAGTTCCACAATTTGGCCAAAAGGTTTCCAGGAATTGAGATGAGCTTTCCAAATGGCACAATGACGAACACRTTGACGGCGGCGAAGAATCCAAAGAAGATGGCGAAGAGAAGTGTGAATGGAAGAGCCAGGATTGTGAAGAAACGGTAGACGAACAGGCGAACCCAGTTGAAGACACTGGCGTTGAGACGCCACATGAATTCCCAAGTGTGTTGAGAGTCGGCCTCGCCGAAGATGTCGTCAAAGTTGTGCTGGACGTGGTTGTTGAGTCCATTGTGGTCGCGGTTGACAAAGTCCATGCCGATGGCGATGTGGTCTTCCTGGAAGGAAAAAAATTGGTTAGTTGGTTTATCTAGGTGGGTATAGGTGAGTCTAGATGAGTCTAGATAAGTTTAGGTGGGTCTAAGAAAATCTAAATAGGTTTAGAAAGGTTTAGAAAGGTTTTAAAGGGTCTAGAGGGAAGCGAATACTAGCCTAGATGGGTTAAGCTAGCTCATATGAGTCTAGACAAAGTTAGAAAGGTCTACAACAATAAAACATGGAACTGAAAAGGTCTGGAATGGTGCGAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACATATGGGAATTTAGACACAT</pcr_primer_p1>
		<pcr_primer_p2>CTCTTCCATTCACACTTCTCTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GACATATGGGAATTTAGACACATGGTGCAGTGGTTTCCTGGTTGATACCGTACTTTCTGATGTTGAAGTTGGAGAAGATGAGTCCGACGGCCGAGGCGACTGGATCGAAGACAGCGTGCACGAGCCAGTTCCACAATTTGGCCAAAAGGTTTCCAGGAATTGAGATGAGCTTTCCAAATGGCACAATGACGAACACATTGACGGCGGCGAAGAATCCAAAGAAGATGGCGAAGAGAAGTGTGAATGGAAGAG</canonical_amplicon>
		<polymorphic_amplicon>GACATATGGGAATTTAGACACATGGTGCAGTGGTTTCCTGGTTGATACCGTACTTTCTGATGTTGAAGTTGGAGAAGATGAGTCCGACGGCCGAGGCGACTGGATCGAAGACAGCGTGCACGAGCCAGTTCCACAATTTGGCCAAAAGGTTTCCAGGAATTGAGATGAGCTTTCCAAATGGCACAATGACGAACACRTTGACGGCGGCGAAGAATCCAAAGAAGATGGCGAAGAGAAGTGTGAATGGAAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36514</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>373782</contig_pos>
        <strand>+</strand>
        <context>GCAGAGGCTC[C/T]ACCCCTACGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATCTCTAGAGGACCCCATACTTAACCCACTACCCTCAAAGCAGAGGCTC</left_flank>
        <right_flank>ACCCCTACGTCCAACTTTTGCTCACCTTCTGCTCATTCTCGCACTTCTTG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAAGGAAAAAAATTGGTTAGTTGGTTTATCTAGGTGGGTATAGGTGAGTCTAGATGAGTCTAGATAAGTTTAGGTGGGTCTAAGAAAATCTAAATAGGTTTAGAAAGGTTTAGAAAGGTTTTAAAGGGTCTAGAGGGAAGCGAATACTAGCCTAGATGGGTTAAGCTAGCTCATATGAGTCTAGACAAAGTTAGAAAGGTCTACAACAATAAAACATGGAACTGAAAAGGTCTGGAATGGTGCGAAAAGGGTTTAGCTAGGTTACTATGGACCAACTCACCAATGCAGGTAGATCTAGAAGGATCTAGATGGGTTAGAAATATGCGAAATAGCCATAAGGTCAAATTAAGATTCAATACATTTTGCACTGTTTCACATAGGCCTTATGAAACTGCTAATTTCATGTGCTATGTTAATCTTCTCTTTAGCTATGCTTAGTTACTCGAATATCTCTAGAGGACCCCATACTTAACCCACTACCCTCAAAGCAGAGGCTCCACCCCTACGTCCAACTTTTGCTCACCTTCTGCTCATTCTCGCACTTCTTGGTCTTGCACTTTGACCACCATCCCATCTTCTTCTCTTTCAGCGGCTTCTCCTCAGCATCGCCAGCAGCGGCTCCCTCCTCAACATTGGCCTCGTCAACGGAAGCAGCAGCCTTCTTCTTTCCAAATTGGAACCAGTTCTTTTTTGGCTTTGGCTCTTCTGGAGCAACGACGGCGGCTGCTTCAGTGGTGGTCTCGGCTGGGGTCTCGGTGGTGGCGGTGAGTGGAATCTGCTCCTCGGTCTTGATGGCTTGTTCGGTGGACATGGTGATGACTGGAAAATTTTGGGATTTGAAATTAGAAATAGGGATACGGAGGAACTGTAAAGATGAGGAGGTACGCAATGGCGCATTCAAACGAAAGATACAAAAAACCAATAATGGGATAGGACAAACAAAAGAAGAAGAAGAGGTCACCGTATCTCGTTGTATGTGTGCATACGCAATGAACAAC</canonical>
            <polymorphic>TGGAAGGAAAAAAATTGGTTAGTTGGTTTATCTAGGTGGGTATAGGTGAGTCTAGATGAGTCTAGATAAGTTTAGGTGGGTCTAAGAAAATCTAAATAGGTTTAGAAAGGTTTAGAAAGGTTTTAAAGGGTCTAGAGGGAAGCGAATACTAGCCTAGATGGGTTAAGCTAGCTCATATGAGTCTAGACAAAGTTAGAAAGGTCTACAACAATAAAACATGGAACTGAAAAGGTCTGGAATGGTGCGAAAAGGGTTTAGCTAGGTTACTATGGACCAACTCACCAATGCAGGTAGATCTAGAAGGATCTAGATGGGTTAGAAATATGCGAAATAGCCATAAGGTCAAATTAAGATTCAATACATTTTGCACTGTTTCACATAGGCCTTATGAAACTGCTAATTTCATGTGCTATGTTAATCTTCTCTTTAGCTATGCTTAGTTACTCGAATATCTCTAGAGGACCCCATACTTAACCCACTACCCTCAAAGCAGAGGCTCYACCCCTACGTCCAACTTTTGCTCACCTTCTGCTCATTCTCGCACTTCTTGGTCTTGCACTTTGACCACCATCCCATCTTCTTCTCTTTCAGCGGCTTCTCCTCAGCATCGCCAGCAGCGGCTCCCTCCTCAACATTGGCCTCGTCAACGGAAGCAGCAGCCTTCTTCTTTCCAAATTGGAACCAGTTCTTTTTTGGCTTTGGCTCTTCTGGAGCAACGACGGCGGCTGCTTCAGTGGTGGTCTCGGCTGGGGTCTCGGTGGTGGCGGTGAGTGGAATCTGCTCCTCGGTCTTGATGGCTTGTTCGGTGGACATGGTGATGACTGGAAAATTTTGGGATTTGAAATTAGAAATAGGGATACGGAGGAACTGTAAAGATGAGGAGGTACGCAATGGCGCATTCAAACGAAAGATACAAAAAACCAATAATGGGATAGGACAAACAAAAGAAGAAGAAGAGGTCACCGTATCTCGTTGTATGTGTGCATACGCAATGAACAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>462 320 124 59 35</canonical_bands>
                <polymorphic_bands>462 320 159 59</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>169 166 145 88 69 38 37 35 32 30 23 23 21 19 19 17 15 10 9 9 8 6 4 3 3 2</canonical_bands>
                <polymorphic_bands>169 166 145 88 69 46 38 37 35 32 30 21 19 19 17 15 10 9 9 8 6 4 3 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATAAGGTCAAATTAAGATTCA</pcr_primer_p1>
		<pcr_primer_p2>AGAGAAGAAGATGGGATGGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CCATAAGGTCAAATTAAGATTCAATACATTTTGCACTGTTTCACATAGGCCTTATGAAACTGCTAATTTCATGTGCTATGTTAATCTTCTCTTTAGCTATGCTTAGTTACTCGAATATCTCTAGAGGACCCCATACTTAACCCACTACCCTCAAAGCAGAGGCTCCACCCCTACGTCCAACTTTTGCTCACCTTCTGCTCATTCTCGCACTTCTTGGTCTTGCACTTTGACCACCATCCCATCTTCTTCTCT</canonical_amplicon>
		<polymorphic_amplicon>CCATAAGGTCAAATTAAGATTCAATACATTTTGCACTGTTTCACATAGGCCTTATGAAACTGCTAATTTCATGTGCTATGTTAATCTTCTCTTTAGCTATGCTTAGTTACTCGAATATCTCTAGAGGACCCCATACTTAACCCACTACCCTCAAAGCAGAGGCTCYACCCCTACGTCCAACTTTTGCTCACCTTCTGCTCATTCTCGCACTTCTTGGTCTTGCACTTTGACCACCATCCCATCTTCTTCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36515</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>373819</contig_pos>
        <strand>+</strand>
        <context>TTCTGCTCAT[C/T]CTCGCACTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGCAGAGGCTCCACCCCTACGTCCAACTTTTGCTCACCTTCTGCTCAT</left_flank>
        <right_flank>CTCGCACTTCTTGGTCTTGCACTTTGACCACCATCCCATCTTCTTCTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGTATAGGTGAGTCTAGATGAGTCTAGATAAGTTTAGGTGGGTCTAAGAAAATCTAAATAGGTTTAGAAAGGTTTAGAAAGGTTTTAAAGGGTCTAGAGGGAAGCGAATACTAGCCTAGATGGGTTAAGCTAGCTCATATGAGTCTAGACAAAGTTAGAAAGGTCTACAACAATAAAACATGGAACTGAAAAGGTCTGGAATGGTGCGAAAAGGGTTTAGCTAGGTTACTATGGACCAACTCACCAATGCAGGTAGATCTAGAAGGATCTAGATGGGTTAGAAATATGCGAAATAGCCATAAGGTCAAATTAAGATTCAATACATTTTGCACTGTTTCACATAGGCCTTATGAAACTGCTAATTTCATGTGCTATGTTAATCTTCTCTTTAGCTATGCTTAGTTACTCGAATATCTCTAGAGGACCCCATACTTAACCCACTACCCTCAAAGCAGAGGCTCCACCCCTACGTCCAACTTTTGCTCACCTTCTGCTCATTCTCGCACTTCTTGGTCTTGCACTTTGACCACCATCCCATCTTCTTCTCTTTCAGCGGCTTCTCCTCAGCATCGCCAGCAGCGGCTCCCTCCTCAACATTGGCCTCGTCAACGGAAGCAGCAGCCTTCTTCTTTCCAAATTGGAACCAGTTCTTTTTTGGCTTTGGCTCTTCTGGAGCAACGACGGCGGCTGCTTCAGTGGTGGTCTCGGCTGGGGTCTCGGTGGTGGCGGTGAGTGGAATCTGCTCCTCGGTCTTGATGGCTTGTTCGGTGGACATGGTGATGACTGGAAAATTTTGGGATTTGAAATTAGAAATAGGGATACGGAGGAACTGTAAAGATGAGGAGGTACGCAATGGCGCATTCAAACGAAAGATACAAAAAACCAATAATGGGATAGGACAAACAAAAGAAGAAGAAGAGGTCACCGTATCTCGTTGTATGTGTGCATACGCAATGAACAACGTTGGTCCATCACCCCCAATACACCCCCAACGCATAC</canonical>
            <polymorphic>GGGTATAGGTGAGTCTAGATGAGTCTAGATAAGTTTAGGTGGGTCTAAGAAAATCTAAATAGGTTTAGAAAGGTTTAGAAAGGTTTTAAAGGGTCTAGAGGGAAGCGAATACTAGCCTAGATGGGTTAAGCTAGCTCATATGAGTCTAGACAAAGTTAGAAAGGTCTACAACAATAAAACATGGAACTGAAAAGGTCTGGAATGGTGCGAAAAGGGTTTAGCTAGGTTACTATGGACCAACTCACCAATGCAGGTAGATCTAGAAGGATCTAGATGGGTTAGAAATATGCGAAATAGCCATAAGGTCAAATTAAGATTCAATACATTTTGCACTGTTTCACATAGGCCTTATGAAACTGCTAATTTCATGTGCTATGTTAATCTTCTCTTTAGCTATGCTTAGTTACTCGAATATCTCTAGAGGACCCCATACTTAACCCACTACCCTCAAAGCAGAGGCTCCACCCCTACGTCCAACTTTTGCTCACCTTCTGCTCATYCTCGCACTTCTTGGTCTTGCACTTTGACCACCATCCCATCTTCTTCTCTTTCAGCGGCTTCTCCTCAGCATCGCCAGCAGCGGCTCCCTCCTCAACATTGGCCTCGTCAACGGAAGCAGCAGCCTTCTTCTTTCCAAATTGGAACCAGTTCTTTTTTGGCTTTGGCTCTTCTGGAGCAACGACGGCGGCTGCTTCAGTGGTGGTCTCGGCTGGGGTCTCGGTGGTGGCGGTGAGTGGAATCTGCTCCTCGGTCTTGATGGCTTGTTCGGTGGACATGGTGATGACTGGAAAATTTTGGGATTTGAAATTAGAAATAGGGATACGGAGGAACTGTAAAGATGAGGAGGTACGCAATGGCGCATTCAAACGAAAGATACAAAAAACCAATAATGGGATAGGACAAACAAAAGAAGAAGAAGAGGTCACCGTATCTCGTTGTATGTGTGCATACGCAATGAACAACGTTGGTCCATCACCCCCAATACACCCCCAACGCATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATTCAATACATTTTGCACTGT</pcr_primer_p1>
		<pcr_primer_p2>CGCTGAAAGAGAAGAAGATG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AGATTCAATACATTTTGCACTGTTTCACATAGGCCTTATGAAACTGCTAATTTCATGTGCTATGTTAATCTTCTCTTTAGCTATGCTTAGTTACTCGAATATCTCTAGAGGACCCCATACTTAACCCACTACCCTCAAAGCAGAGGCTCCACCCCTACGTCCAACTTTTGCTCACCTTCTGCTCATTCTCGCACTTCTTGGTCTTGCACTTTGACCACCATCCCATCTTCTTCTCTTTCAGCG</canonical_amplicon>
		<polymorphic_amplicon>AGATTCAATACATTTTGCACTGTTTCACATAGGCCTTATGAAACTGCTAATTTCATGTGCTATGTTAATCTTCTCTTTAGCTATGCTTAGTTACTCGAATATCTCTAGAGGACCCCATACTTAACCCACTACCCTCAAAGCAGAGGCTCCACCCCTACGTCCAACTTTTGCTCACCTTCTGCTCATYCTCGCACTTCTTGGTCTTGCACTTTGACCACCATCCCATCTTCTTCTCTTTCAGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36516</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>373928</contig_pos>
        <strand>+</strand>
        <context>TGGCCTCGTC[A/G]ACGGWAGCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTCCTCAGCATCGCCAGCAGCGGCTCCCTCCTCAACATTGGCCTCGTC</left_flank>
        <right_flank>ACGGAAGCAGCAGCCTTCTTCTTTCCAAATTGGAACCAGTTCTTTTTTGG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTAGCCTAGATGGGTTAAGCTAGCTCATATGAGTCTAGACAAAGTTAGAAAGGTCTACAACAATAAAACATGGAACTGAAAAGGTCTGGAATGGTGCGAAAAGGGTTTAGCTAGGTTACTATGGACCAACTCACCAATGCAGGTAGATCTAGAAGGATCTAGATGGGTTAGAAATATGCGAAATAGCCATAAGGTCAAATTAAGATTCAATACATTTTGCACTGTTTCACATAGGCCTTATGAAACTGCTAATTTCATGTGCTATGTTAATCTTCTCTTTAGCTATGCTTAGTTACTCGAATATCTCTAGAGGACCCCATACTTAACCCACTACCCTCAAAGCAGAGGCTCCACCCCTACGTCCAACTTTTGCTCACCTTCTGCTCATTCTCGCACTTCTTGGTCTTGCACTTTGACCACCATCCCATCTTCTTCTCTTTCAGCGGCTTCTCCTCAGCATCGCCAGCAGCGGCTCCCTCCTCAACATTGGCCTCGTCAACGGAAGCAGCAGCCTTCTTCTTTCCAAATTGGAACCAGTTCTTTTTTGGCTTTGGCTCTTCTGGAGCAACGACGGCGGCTGCTTCAGTGGTGGTCTCGGCTGGGGTCTCGGTGGTGGCGGTGAGTGGAATCTGCTCCTCGGTCTTGATGGCTTGTTCGGTGGACATGGTGATGACTGGAAAATTTTGGGATTTGAAATTAGAAATAGGGATACGGAGGAACTGTAAAGATGAGGAGGTACGCAATGGCGCATTCAAACGAAAGATACAAAAAACCAATAATGGGATAGGACAAACAAAAGAAGAAGAAGAGGTCACCGTATCTCGTTGTATGTGTGCATACGCAATGAACAACGTTGGTCCATCACCCCCAATACACCCCCAACGCATACCCCCGCCCCTTCGCACTGTGTCCACCCTTGGCAACGTGCCAAGCTCCGCCCACTCCTGTGTGCTCTCTGGGGGGATAAAGAGGGGTGTCTGTTGGGGTGGACTGGAGAG</canonical>
            <polymorphic>TACTAGCCTAGATGGGTTAAGCTAGCTCATATGAGTCTAGACAAAGTTAGAAAGGTCTACAACAATAAAACATGGAACTGAAAAGGTCTGGAATGGTGCGAAAAGGGTTTAGCTAGGTTACTATGGACCAACTCACCAATGCAGGTAGATCTAGAAGGATCTAGATGGGTTAGAAATATGCGAAATAGCCATAAGGTCAAATTAAGATTCAATACATTTTGCACTGTTTCACATAGGCCTTATGAAACTGCTAATTTCATGTGCTATGTTAATCTTCTCTTTAGCTATGCTTAGTTACTCGAATATCTCTAGAGGACCCCATACTTAACCCACTACCCTCAAAGCAGAGGCTCCACCCCTACGTCCAACTTTTGCTCACCTTCTGCTCATTCTCGCACTTCTTGGTCTTGCACTTTGACCACCATCCCATCTTCTTCTCTTTCAGCGGCTTCTCCTCAGCATCGCCAGCAGCGGCTCCCTCCTCAACATTGGCCTCGTCRACGGAAGCAGCAGCCTTCTTCTTTCCAAATTGGAACCAGTTCTTTTTTGGCTTTGGCTCTTCTGGAGCAACGACGGCGGCTGCTTCAGTGGTGGTCTCGGCTGGGGTCTCGGTGGTGGCGGTGAGTGGAATCTGCTCCTCGGTCTTGATGGCTTGTTCGGTGGACATGGTGATGACTGGAAAATTTTGGGATTTGAAATTAGAAATAGGGATACGGAGGAACTGTAAAGATGAGGAGGTACGCAATGGCGCATTCAAACGAAAGATACAAAAAACCAATAATGGGATAGGACAAACAAAAGAAGAAGAAGAGGTCACCGTATCTCGTTGTATGTGTGCATACGCAATGAACAACGTTGGTCCATCACCCCCAATACACCCCCAACGCATACCCCCGCCCCTTCGCACTGTGTCCACCCTTGGCAACGTGCCAAGCTCCGCCCACTCCTGTGTGCTCTCTGGGGGGATAAAGAGGGGTGTCTGTTGGGGTGGACTGGAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCCATCTTCTTCTCTTTCA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCCAGTCATCACCATGT</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>ATCCCATCTTCTTCTCTTTCAGCGGCTTCTCCTCAGCATCGCCAGCAGCGGCTCCCTCCTCAACATTGGCCTCGTCAACGGAAGCAGCAGCCTTCTTCTTTCCAAATTGGAACCAGTTCTTTTTTGGCTTTGGCTCTTCTGGAGCAACGACGGCGGCTGCTTCAGTGGTGGTCTCGGCTGGGGTCTCGGTGGTGGCGGTGAGTGGAATCTGCTCCTCGGTCTTGATGGCTTGTTCGGTGGACATGGTGATGACTGGAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATCCCATCTTCTTCTCTTTCAGCGGCTTCTCCTCAGCATCGCCAGCAGCGGCTCCCTCCTCAACATTGGCCTCGTCRACGGAAGCAGCAGCCTTCTTCTTTCCAAATTGGAACCAGTTCTTTTTTGGCTTTGGCTCTTCTGGAGCAACGACGGCGGCTGCTTCAGTGGTGGTCTCGGCTGGGGTCTCGGTGGTGGCGGTGAGTGGAATCTGCTCCTCGGTCTTGATGGCTTGTTCGGTGGACATGGTGATGACTGGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36517</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>373933</contig_pos>
        <strand>+</strand>
        <context>TCGTCRACGG[A/T]AGCAGCAGCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCAGCATCGCCAGCAGCGGCTCCCTCCTCAACATTGGCCTCGTCAACGG</left_flank>
        <right_flank>AGCAGCAGCCTTCTTCTTTCCAAATTGGAACCAGTTCTTTTTTGGCTTTG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCTAGATGGGTTAAGCTAGCTCATATGAGTCTAGACAAAGTTAGAAAGGTCTACAACAATAAAACATGGAACTGAAAAGGTCTGGAATGGTGCGAAAAGGGTTTAGCTAGGTTACTATGGACCAACTCACCAATGCAGGTAGATCTAGAAGGATCTAGATGGGTTAGAAATATGCGAAATAGCCATAAGGTCAAATTAAGATTCAATACATTTTGCACTGTTTCACATAGGCCTTATGAAACTGCTAATTTCATGTGCTATGTTAATCTTCTCTTTAGCTATGCTTAGTTACTCGAATATCTCTAGAGGACCCCATACTTAACCCACTACCCTCAAAGCAGAGGCTCCACCCCTACGTCCAACTTTTGCTCACCTTCTGCTCATTCTCGCACTTCTTGGTCTTGCACTTTGACCACCATCCCATCTTCTTCTCTTTCAGCGGCTTCTCCTCAGCATCGCCAGCAGCGGCTCCCTCCTCAACATTGGCCTCGTCAACGGAAGCAGCAGCCTTCTTCTTTCCAAATTGGAACCAGTTCTTTTTTGGCTTTGGCTCTTCTGGAGCAACGACGGCGGCTGCTTCAGTGGTGGTCTCGGCTGGGGTCTCGGTGGTGGCGGTGAGTGGAATCTGCTCCTCGGTCTTGATGGCTTGTTCGGTGGACATGGTGATGACTGGAAAATTTTGGGATTTGAAATTAGAAATAGGGATACGGAGGAACTGTAAAGATGAGGAGGTACGCAATGGCGCATTCAAACGAAAGATACAAAAAACCAATAATGGGATAGGACAAACAAAAGAAGAAGAAGAGGTCACCGTATCTCGTTGTATGTGTGCATACGCAATGAACAACGTTGGTCCATCACCCCCAATACACCCCCAACGCATACCCCCGCCCCTTCGCACTGTGTCCACCCTTGGCAACGTGCCAAGCTCCGCCCACTCCTGTGTGCTCTCTGGGGGGATAAAGAGGGGTGTCTGTTGGGGTGGACTGGAGAGGATTA</canonical>
            <polymorphic>GCCTAGATGGGTTAAGCTAGCTCATATGAGTCTAGACAAAGTTAGAAAGGTCTACAACAATAAAACATGGAACTGAAAAGGTCTGGAATGGTGCGAAAAGGGTTTAGCTAGGTTACTATGGACCAACTCACCAATGCAGGTAGATCTAGAAGGATCTAGATGGGTTAGAAATATGCGAAATAGCCATAAGGTCAAATTAAGATTCAATACATTTTGCACTGTTTCACATAGGCCTTATGAAACTGCTAATTTCATGTGCTATGTTAATCTTCTCTTTAGCTATGCTTAGTTACTCGAATATCTCTAGAGGACCCCATACTTAACCCACTACCCTCAAAGCAGAGGCTCCACCCCTACGTCCAACTTTTGCTCACCTTCTGCTCATTCTCGCACTTCTTGGTCTTGCACTTTGACCACCATCCCATCTTCTTCTCTTTCAGCGGCTTCTCCTCAGCATCGCCAGCAGCGGCTCCCTCCTCAACATTGGCCTCGTCAACGGWAGCAGCAGCCTTCTTCTTTCCAAATTGGAACCAGTTCTTTTTTGGCTTTGGCTCTTCTGGAGCAACGACGGCGGCTGCTTCAGTGGTGGTCTCGGCTGGGGTCTCGGTGGTGGCGGTGAGTGGAATCTGCTCCTCGGTCTTGATGGCTTGTTCGGTGGACATGGTGATGACTGGAAAATTTTGGGATTTGAAATTAGAAATAGGGATACGGAGGAACTGTAAAGATGAGGAGGTACGCAATGGCGCATTCAAACGAAAGATACAAAAAACCAATAATGGGATAGGACAAACAAAAGAAGAAGAAGAGGTCACCGTATCTCGTTGTATGTGTGCATACGCAATGAACAACGTTGGTCCATCACCCCCAATACACCCCCAACGCATACCCCCGCCCCTTCGCACTGTGTCCACCCTTGGCAACGTGCCAAGCTCCGCCCACTCCTGTGTGCTCTCTGGGGGGATAAAGAGGGGTGTCTGTTGGGGTGGACTGGAGAGGATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCCATCTTCTTCTCTTTCA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCCAGTCATCACCATGT</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>ATCCCATCTTCTTCTCTTTCAGCGGCTTCTCCTCAGCATCGCCAGCAGCGGCTCCCTCCTCAACATTGGCCTCGTCAACGGAAGCAGCAGCCTTCTTCTTTCCAAATTGGAACCAGTTCTTTTTTGGCTTTGGCTCTTCTGGAGCAACGACGGCGGCTGCTTCAGTGGTGGTCTCGGCTGGGGTCTCGGTGGTGGCGGTGAGTGGAATCTGCTCCTCGGTCTTGATGGCTTGTTCGGTGGACATGGTGATGACTGGAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATCCCATCTTCTTCTCTTTCAGCGGCTTCTCCTCAGCATCGCCAGCAGCGGCTCCCTCCTCAACATTGGCCTCGTCAACGGWAGCAGCAGCCTTCTTCTTTCCAAATTGGAACCAGTTCTTTTTTGGCTTTGGCTCTTCTGGAGCAACGACGGCGGCTGCTTCAGTGGTGGTCTCGGCTGGGGTCTCGGTGGTGGCGGTGAGTGGAATCTGCTCCTCGGTCTTGATGGCTTGTTCGGTGGACATGGTGATGACTGGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36518</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>376909</contig_pos>
        <strand>+</strand>
        <context>ACTCCACAAT[A/G]TTAATGTTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAAT</left_flank>
        <right_flank>TTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTATTTAATTTATAGTTTTCATGGTTTTACATCCCTTGTTGTTTGAAATTGAAAATTTCCGTACGTCATCAGTGAAAAATATTCCGGAAATCCCGCAATTTCACAGTAATCTTTTGAACTTGTTCAGTGAAATTGATAGATTTTCATACATTTTGAACAAAAGTTCACCGGTTCTCTTTGAAAAGTTTCGGGAAAAAAATGTTGGATAAATCGATGGGGTTCTTCTAATTGAAGAGCCTCTGTAATAAAAAAATTCTCAACGATTTTTCGAAACAATAGAAGAACTGGCTCCATCAGGTTTTACGGTATGTTAAAACCTAATTTCCGAAAAACCCTGTTTCAGGAATTTCATATTTGGCAATCAATTTACTTCAAACTACTGCTTGGAATTTTTTCTGTTTCAAACTGCTTGGAATTTTTTCTGTTCCATAAACATTTTGAATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATTTCAAATTTAACACAGAATTTCACTACTTCCACTTATGTTTCCCCATGTTTTCTGTTTCACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAGGTAAACAAGGGGCCGCTATCAGCTTATCAGTATATCTACGTGTTGAATAACCATGGCGGCGAGGGAACTGGAAATAAAGAGAGG</canonical>
            <polymorphic>TTGTATTTAATTTATAGTTTTCATGGTTTTACATCCCTTGTTGTTTGAAATTGAAAATTTCCGTACGTCATCAGTGAAAAATATTCCGGAAATCCCGCAATTTCACAGTAATCTTTTGAACTTGTTCAGTGAAATTGATAGATTTTCATACATTTTGAACAAAAGTTCACCGGTTCTCTTTGAAAAGTTTCGGGAAAAAAATGTTGGATAAATCGATGGGGTTCTTCTAATTGAAGAGCCTCTGTAATAAAAAAATTCTCAACGATTTTTCGAAACAATAGAAGAACTGGCTCCATCAGGTTTTACGGTATGTTAAAACCTAATTTCCGAAAAACCCTGTTTCAGGAATTTCATATTTGGCAATCAATTTACTTCAAACTACTGCTTGGAATTTTTTCTGTTTCAAACTGCTTGGAATTTTTTCTGTTCCATAAACATTTTGAATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATRTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATTTCAAATTTAACACAGAATTTCACTACTTCCACTTATGTTTCCCCATGTTTTCTGTTTCACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAGGTAAACAAGGGGCCGCTATCAGCTTATCAGTATATCTACGTGTTGAATAACCATGGCGGCGAGGGAACTGGAAATAAAGAGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTCATCGAAGTGTTCAATA</pcr_primer_p1>
		<pcr_primer_p2>AATAGCATTAACAAAAGCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATT</canonical_amplicon>
		<polymorphic_amplicon>AATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATRTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36519</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>377032</contig_pos>
        <strand>+</strand>
        <context>TTTTTGTGCC[A/C]TACTTKTGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCC</left_flank>
        <right_flank>TACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCAGTGAAATTGATAGATTTTCATACATTTTGAACAAAAGTTCACCGGTTCTCTTTGAAAAGTTTCGGGAAAAAAATGTTGGATAAATCGATGGGGTTCTTCTAATTGAAGAGCCTCTGTAATAAAAAAATTCTCAACGATTTTTCGAAACAATAGAAGAACTGGCTCCATCAGGTTTTACGGTATGTTAAAACCTAATTTCCGAAAAACCCTGTTTCAGGAATTTCATATTTGGCAATCAATTTACTTCAAACTACTGCTTGGAATTTTTTCTGTTTCAAACTGCTTGGAATTTTTTCTGTTCCATAAACATTTTGAATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATTTCAAATTTAACACAGAATTTCACTACTTCCACTTATGTTTCCCCATGTTTTCTGTTTCACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAGGTAAACAAGGGGCCGCTATCAGCTTATCAGTATATCTACGTGTTGAATAACCATGGCGGCGAGGGAACTGGAAATAAAGAGAGGATGTATGTAATTTGTTGTTTGGAGCCCCAACAAATGCGCAAATAATCACCAGGTACCGACCTTCTGATAAGAAAAGTGATAAGGAATAACAGGAAGAGGTACACAACGTTAATGGGTACCGTT</canonical>
            <polymorphic>GTTCAGTGAAATTGATAGATTTTCATACATTTTGAACAAAAGTTCACCGGTTCTCTTTGAAAAGTTTCGGGAAAAAAATGTTGGATAAATCGATGGGGTTCTTCTAATTGAAGAGCCTCTGTAATAAAAAAATTCTCAACGATTTTTCGAAACAATAGAAGAACTGGCTCCATCAGGTTTTACGGTATGTTAAAACCTAATTTCCGAAAAACCCTGTTTCAGGAATTTCATATTTGGCAATCAATTTACTTCAAACTACTGCTTGGAATTTTTTCTGTTTCAAACTGCTTGGAATTTTTTCTGTTCCATAAACATTTTGAATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCMTACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATTTCAAATTTAACACAGAATTTCACTACTTCCACTTATGTTTCCCCATGTTTTCTGTTTCACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAGGTAAACAAGGGGCCGCTATCAGCTTATCAGTATATCTACGTGTTGAATAACCATGGCGGCGAGGGAACTGGAAATAAAGAGAGGATGTATGTAATTTGTTGTTTGGAGCCCCAACAAATGCGCAAATAATCACCAGGTACCGACCTTCTGATAAGAAAAGTGATAAGGAATAACAGGAAGAGGTACACAACGTTAATGGGTACCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTCATCGAAGTGTTCAATA</pcr_primer_p1>
		<pcr_primer_p2>AATAGCATTAACAAAAGCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATT</canonical_amplicon>
		<polymorphic_amplicon>AATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCMTACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36520</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>377038</contig_pos>
        <strand>+</strand>
        <context>TGCCMTACTT[G/T]TGTAGAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTT</left_flank>
        <right_flank>TGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAATTGATAGATTTTCATACATTTTGAACAAAAGTTCACCGGTTCTCTTTGAAAAGTTTCGGGAAAAAAATGTTGGATAAATCGATGGGGTTCTTCTAATTGAAGAGCCTCTGTAATAAAAAAATTCTCAACGATTTTTCGAAACAATAGAAGAACTGGCTCCATCAGGTTTTACGGTATGTTAAAACCTAATTTCCGAAAAACCCTGTTTCAGGAATTTCATATTTGGCAATCAATTTACTTCAAACTACTGCTTGGAATTTTTTCTGTTTCAAACTGCTTGGAATTTTTTCTGTTCCATAAACATTTTGAATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATTTCAAATTTAACACAGAATTTCACTACTTCCACTTATGTTTCCCCATGTTTTCTGTTTCACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAGGTAAACAAGGGGCCGCTATCAGCTTATCAGTATATCTACGTGTTGAATAACCATGGCGGCGAGGGAACTGGAAATAAAGAGAGGATGTATGTAATTTGTTGTTTGGAGCCCCAACAAATGCGCAAATAATCACCAGGTACCGACCTTCTGATAAGAAAAGTGATAAGGAATAACAGGAAGAGGTACACAACGTTAATGGGTACCGTTATCAGT</canonical>
            <polymorphic>TGAAATTGATAGATTTTCATACATTTTGAACAAAAGTTCACCGGTTCTCTTTGAAAAGTTTCGGGAAAAAAATGTTGGATAAATCGATGGGGTTCTTCTAATTGAAGAGCCTCTGTAATAAAAAAATTCTCAACGATTTTTCGAAACAATAGAAGAACTGGCTCCATCAGGTTTTACGGTATGTTAAAACCTAATTTCCGAAAAACCCTGTTTCAGGAATTTCATATTTGGCAATCAATTTACTTCAAACTACTGCTTGGAATTTTTTCTGTTTCAAACTGCTTGGAATTTTTTCTGTTCCATAAACATTTTGAATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTTKTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATTTCAAATTTAACACAGAATTTCACTACTTCCACTTATGTTTCCCCATGTTTTCTGTTTCACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAGGTAAACAAGGGGCCGCTATCAGCTTATCAGTATATCTACGTGTTGAATAACCATGGCGGCGAGGGAACTGGAAATAAAGAGAGGATGTATGTAATTTGTTGTTTGGAGCCCCAACAAATGCGCAAATAATCACCAGGTACCGACCTTCTGATAAGAAAAGTGATAAGGAATAACAGGAAGAGGTACACAACGTTAATGGGTACCGTTATCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTCATCGAAGTGTTCAATA</pcr_primer_p1>
		<pcr_primer_p2>AATAGCATTAACAAAAGCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATT</canonical_amplicon>
		<polymorphic_amplicon>AATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTTKTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36521</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>377080</contig_pos>
        <strand>+</strand>
        <context>ATTTCAATGC[G/T]TTTTTTTGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGC</left_flank>
        <right_flank>TTTTTTTGCTTTTGTTAATGCTATTTCAAATTTAACACAGAATTTCACTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTCTCTTTGAAAAGTTTCGGGAAAAAAATGTTGGATAAATCGATGGGGTTCTTCTAATTGAAGAGCCTCTGTAATAAAAAAATTCTCAACGATTTTTCGAAACAATAGAAGAACTGGCTCCATCAGGTTTTACGGTATGTTAAAACCTAATTTCCGAAAAACCCTGTTTCAGGAATTTCATATTTGGCAATCAATTTACTTCAAACTACTGCTTGGAATTTTTTCTGTTTCAAACTGCTTGGAATTTTTTCTGTTCCATAAACATTTTGAATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATTTCAAATTTAACACAGAATTTCACTACTTCCACTTATGTTTCCCCATGTTTTCTGTTTCACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAGGTAAACAAGGGGCCGCTATCAGCTTATCAGTATATCTACGTGTTGAATAACCATGGCGGCGAGGGAACTGGAAATAAAGAGAGGATGTATGTAATTTGTTGTTTGGAGCCCCAACAAATGCGCAAATAATCACCAGGTACCGACCTTCTGATAAGAAAAGTGATAAGGAATAACAGGAAGAGGTACACAACGTTAATGGGTACCGTTATCAGTGTGGTTGTAGGGACCTGCATTTCTGGGATCAATGAATGTATG</canonical>
            <polymorphic>GGTTCTCTTTGAAAAGTTTCGGGAAAAAAATGTTGGATAAATCGATGGGGTTCTTCTAATTGAAGAGCCTCTGTAATAAAAAAATTCTCAACGATTTTTCGAAACAATAGAAGAACTGGCTCCATCAGGTTTTACGGTATGTTAAAACCTAATTTCCGAAAAACCCTGTTTCAGGAATTTCATATTTGGCAATCAATTTACTTCAAACTACTGCTTGGAATTTTTTCTGTTTCAAACTGCTTGGAATTTTTTCTGTTCCATAAACATTTTGAATTTTCATCGAAGTGTTCAATATATGATATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCKTTTTTTTGCTTTTGTTAATGCTATTTCAAATTTAACACAGAATTTCACTACTTCCACTTATGTTTCCCCATGTTTTCTGTTTCACCAACTTTGTAAATTGAGACTGATTTTTTATATATAATATGTCGTCGACTTCATTTTCGAGCTAGTTTTATTTAGGTTTCATTCACCAATTATCAGGATAATCACCCTGACCCAGTTACCGACAATATATCGATAAGAGAAACAATTATAGGCAACAGAAGGTAAACAAGGGGCCGCTATCAGCTTATCAGTATATCTACGTGTTGAATAACCATGGCGGCGAGGGAACTGGAAATAAAGAGAGGATGTATGTAATTTGTTGTTTGGAGCCCCAACAAATGCGCAAATAATCACCAGGTACCGACCTTCTGATAAGAAAAGTGATAAGGAATAACAGGAAGAGGTACACAACGTTAATGGGTACCGTTATCAGTGTGGTTGTAGGGACCTGCATTTCTGGGATCAATGAATGTATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGTTGTTCCAATTCTTGACTC</pcr_primer_p1>
		<pcr_primer_p2>TGGAAGTAGTGAAATTCTGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCTTTTTTTTGCTTTTGTTAATGCTATTTCAAATTTAACACAGAATTTCACTACTTCCA</canonical_amplicon>
		<polymorphic_amplicon>TATGTTGTTCCAATTCTTGACTCCACAATGTTAATGTTTATTCTTTTGGAAAAAAGAAATACTCTTTTGTTAGTTAAAAACACTCCAAATTTTTTTTTCTGATTCAATTATGTGTTTAGTACATAGTTTTCATGATTGCTACTTTTTGTGCCATACTTTTGTAGAATTTCAAGTTGCTTTTTTTAATGCTATTTCAATGCKTTTTTTTGCTTTTGTTAATGCTATTTCAAATTTAACACAGAATTTCACTACTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36522</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>387504</contig_pos>
        <strand></strand>
        <context>ttgaatgaaa[T/G]kgtaaaacag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AGCATAATATGCGAATGATTTTCTGAAAATGTTTCTCTTCTTGAATGAAA</left_flank>
        <right_flank>GGTAAAACAGAGTATCCTGTTTCTCGAGTTTTATTAGTTTCAAGTCGAGT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACTGCACGCCAATGCAAAGCATAGTGGTTGACGGAAGTTTAGAGTTCAATGACTTCCTTTTTGTCGGCTGCTGCATTTCATCATATACCGCGCCTTCGCCACTTCGGTTGTCATTCTGAACTAATGGTCCCCAAGGAGGCAGCTAACCAACTGAATTCCTTTCACCACAGAAAAGGGTGTGGTCATAGGGAACGGGAGATAGGAAGTGGGGCGAAAAAGCCGGTATTGCGCGTTGAGAGTTCGAGCCCGGTAGGAAGCTTTTTTTTTGAATTTTGAACACGGTTCAGAAATGAGTGAGGTATTATCCTTGTCTGAGAAAAAAAAGGTTGAGACGCAGAGAAAAAGTGTCTGTGTCTCCACCTTATGTGTGCTATTTAGGCTCTCCGCTTCGATATCGCTACCGTATTCAGACTGCAAAAAATACTCTCTAACCTTTTTTCTCAGACAAGCATAATATGCGAATGATTTTCTGAAAATGTTTCTCTTCTTGAATGAAATGGTAAAACAGAGTATCCTGTTTCTCGAGTTTTATTAGTTTCAAGTCGAGTTAAAAGATGATTAAACTCCAAATCTTTTGTTTTCATTTTTGTTTGGAGTCACTAAAAAACCTGGAAGAAAGTTTGATTTAAAAAATCAAAACAATTCAAGTTTTTTTTCTGGAGAGAAAACGCATAACTTTTTTCGATAAGGGCCGAAAGTCACATAACTAGGGACAAAGCTGAAAATAGTTGGTAAAAGGGAAAATTTGTTTCTAAAATTTACTATTAGTGTAAGCGACAAAACCCGATGTTTCAGAATTTTTCTGCATTTTTGCATAGTGGTTTTTGCACATCAAATTAGTATTGCTCCTTTCAATTTGTTGTTTTTCTACTTTTTTACTTGCTAATCGAAAAAGAGAAATATTCAAAAACGATGTCATTACTAAAAGTATCCGAAAAAGAAACCACATTCGCCGGTAAATTTTTTTTACTTCTAGACACCGTTTTCGAAATTTTCTT</canonical>
            <polymorphic>CCACTGCACGCCAATGCAAAGCATAGTGGTTGACGGAAGTTTAGAGTTCAATGACTTCCTTTTTGTCGGCTGCTGCATTTCATCATATACCGCGCCTTCGCCACTTCGGTTGTCATTCTGAACTAATGGTCCCCAAGGAGGCAGCTAACCAACTGAATTCCTTTCACCACAGAAAAGGGTGTGGTCATAGGGAACGGGAGATAGGAAGTGGGGCGAAAAAGCCGGTATTGCGCGTTGAGAGTTCGAGCCCGGTAGGAAGCTTTTTTTTTGAATTTTGAACACGGTTCAGAAATGAGTGAGGTATTATCCTTGTCTGAGAAAAAAAAGGTTGAGACGCAGAGAAAAAGTGTCTGTGTCTCCACCTTATGTGTGCTATTTAGGCTCTCCGCTTCGATATCGCTACCGTATTCAGACTGCAAAAAATACTCTCTAACCTTTTTTCTCAGACAAGCATAATATGCGAATGATTTTCTGAAAATGTTTCTCTTCTTGAATGAAAKGGTAAAACAGAGTATCCTGTTTCTCGAGTTTTATTAGTTTCAAGTCGAGTTAAAAGATGATTAAACTCCAAATCTTTTGTTTTCATTTTTGTTTGGAGTCACTAAAAAACCTGGAAGAAAGTTTGATTTAAAAAATCAAAACAATTCAAGTTTTTTTTCTGGAGAGAAAACGCATAACTTTTTTCGATAAGGGCCGAAAGTCACATAACTAGGGACAAAGCTGAAAATAGTTGGTAAAAGGGAAAATTTGTTTCTAAAATTTACTATTAGTGTAAGCGACAAAACCCGATGTTTCAGAATTTTTCTGCATTTTTGCATAGTGGTTTTTGCACATCAAATTAGTATTGCTCCTTTCAATTTGTTGTTTTTCTACTTTTTTACTTGCTAATCGAAAAAGAGAAATATTCAAAAACGATGTCATTACTAAAAGTATCCGAAAAAGAAACCACATTCGCCGGTAAATTTTTTTTACTTCTAGACACCGTTTTCGAAATTTTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGTCATTCTGAACTAATGGTC</pcr_primer_p1>
		<pcr_primer_p2>CTATTTTCAGCTTTGTCCCTAGT</pcr_primer_p2>
		<pcr_amplicon_size>622</pcr_amplicon_size>
		<canonical_amplicon>GTTGTCATTCTGAACTAATGGTCCCCAAGGAGGCAGCTAACCAACTGAATTCCTTTCACCACAGAAAAGGGTGTGGTCATAGGGAACGGGAGATAGGAAGTGGGGCGAAAAAGCCGGTATTGCGCGTTGAGAGTTCGAGCCCGGTAGGAAGCTTTTTTTTTGAATTTTGAACACGGTTCAGAAATGAGTGAGGTATTATCCTTGTCTGAGAAAAAAAAGGTTGAGACGCAGAGAAAAAGTGTCTGTGTCTCCACCTTATGTGTGCTATTTAGGCTCTCCGCTTCGATATCGCTACCGTATTCAGACTGCAAAAAATACTCTCTAACCTTTTTTCTCAGACAAGCATAATATGCGAATGATTTTCTGAAAATGTTTCTCTTCTTGAATGAAATGGTAAAACAGAGTATCCTGTTTCTCGAGTTTTATTAGTTTCAAGTCGAGTTAAAAGATGATTAAACTCCAAATCTTTTGTTTTCATTTTTGTTTGGAGTCACTAAAAAACCTGGAAGAAAGTTTGATTTAAAAAATCAAAACAATTCAAGTTTTTTTTCTGGAGAGAAAACGCATAACTTTTTTCGATAAGGGCCGAAAGTCACATAACTAGGGACAAAGCTGAAAATAG</canonical_amplicon>
		<polymorphic_amplicon>GTTGTCATTCTGAACTAATGGTCCCCAAGGAGGCAGCTAACCAACTGAATTCCTTTCACCACAGAAAAGGGTGTGGTCATAGGGAACGGGAGATAGGAAGTGGGGCGAAAAAGCCGGTATTGCGCGTTGAGAGTTCGAGCCCGGTAGGAAGCTTTTTTTTTGAATTTTGAACACGGTTCAGAAATGAGTGAGGTATTATCCTTGTCTGAGAAAAAAAAGGTTGAGACGCAGAGAAAAAGTGTCTGTGTCTCCACCTTATGTGTGCTATTTAGGCTCTCCGCTTCGATATCGCTACCGTATTCAGACTGCAAAAAATACTCTCTAACCTTTTTTCTCAGACAAGCATAATATGCGAATGATTTTCTGAAAATGTTTCTCTTCTTGAATGAAAKGGTAAAACAGAGTATCCTGTTTCTCGAGTTTTATTAGTTTCAAGTCGAGTTAAAAGATGATTAAACTCCAAATCTTTTGTTTTCATTTTTGTTTGGAGTCACTAAAAAACCTGGAAGAAAGTTTGATTTAAAAAATCAAAACAATTCAAGTTTTTTTTCTGGAGAGAAAACGCATAACTTTTTTCGATAAGGGCCGAAAGTCACATAACTAGGGACAAAGCTGAAAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36523</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>387505</contig_pos>
        <strand></strand>
        <context>tgaatgaaak[G/T]gtaaaacaga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCATAATATGCGAATGATTTTCTGAAAATGTTTCTCTTCTTGAATGAAAT</left_flank>
        <right_flank>GTAAAACAGAGTATCCTGTTTCTCGAGTTTTATTAGTTTCAAGTCGAGTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTGCACGCCAATGCAAAGCATAGTGGTTGACGGAAGTTTAGAGTTCAATGACTTCCTTTTTGTCGGCTGCTGCATTTCATCATATACCGCGCCTTCGCCACTTCGGTTGTCATTCTGAACTAATGGTCCCCAAGGAGGCAGCTAACCAACTGAATTCCTTTCACCACAGAAAAGGGTGTGGTCATAGGGAACGGGAGATAGGAAGTGGGGCGAAAAAGCCGGTATTGCGCGTTGAGAGTTCGAGCCCGGTAGGAAGCTTTTTTTTTGAATTTTGAACACGGTTCAGAAATGAGTGAGGTATTATCCTTGTCTGAGAAAAAAAAGGTTGAGACGCAGAGAAAAAGTGTCTGTGTCTCCACCTTATGTGTGCTATTTAGGCTCTCCGCTTCGATATCGCTACCGTATTCAGACTGCAAAAAATACTCTCTAACCTTTTTTCTCAGACAAGCATAATATGCGAATGATTTTCTGAAAATGTTTCTCTTCTTGAATGAAATGGTAAAACAGAGTATCCTGTTTCTCGAGTTTTATTAGTTTCAAGTCGAGTTAAAAGATGATTAAACTCCAAATCTTTTGTTTTCATTTTTGTTTGGAGTCACTAAAAAACCTGGAAGAAAGTTTGATTTAAAAAATCAAAACAATTCAAGTTTTTTTTCTGGAGAGAAAACGCATAACTTTTTTCGATAAGGGCCGAAAGTCACATAACTAGGGACAAAGCTGAAAATAGTTGGTAAAAGGGAAAATTTGTTTCTAAAATTTACTATTAGTGTAAGCGACAAAACCCGATGTTTCAGAATTTTTCTGCATTTTTGCATAGTGGTTTTTGCACATCAAATTAGTATTGCTCCTTTCAATTTGTTGTTTTTCTACTTTTTTACTTGCTAATCGAAAAAGAGAAATATTCAAAAACGATGTCATTACTAAAAGTATCCGAAAAAGAAACCACATTCGCCGGTAAATTTTTTTTACTTCTAGACACCGTTTTCGAAATTTTCTTT</canonical>
            <polymorphic>CACTGCACGCCAATGCAAAGCATAGTGGTTGACGGAAGTTTAGAGTTCAATGACTTCCTTTTTGTCGGCTGCTGCATTTCATCATATACCGCGCCTTCGCCACTTCGGTTGTCATTCTGAACTAATGGTCCCCAAGGAGGCAGCTAACCAACTGAATTCCTTTCACCACAGAAAAGGGTGTGGTCATAGGGAACGGGAGATAGGAAGTGGGGCGAAAAAGCCGGTATTGCGCGTTGAGAGTTCGAGCCCGGTAGGAAGCTTTTTTTTTGAATTTTGAACACGGTTCAGAAATGAGTGAGGTATTATCCTTGTCTGAGAAAAAAAAGGTTGAGACGCAGAGAAAAAGTGTCTGTGTCTCCACCTTATGTGTGCTATTTAGGCTCTCCGCTTCGATATCGCTACCGTATTCAGACTGCAAAAAATACTCTCTAACCTTTTTTCTCAGACAAGCATAATATGCGAATGATTTTCTGAAAATGTTTCTCTTCTTGAATGAAATKGTAAAACAGAGTATCCTGTTTCTCGAGTTTTATTAGTTTCAAGTCGAGTTAAAAGATGATTAAACTCCAAATCTTTTGTTTTCATTTTTGTTTGGAGTCACTAAAAAACCTGGAAGAAAGTTTGATTTAAAAAATCAAAACAATTCAAGTTTTTTTTCTGGAGAGAAAACGCATAACTTTTTTCGATAAGGGCCGAAAGTCACATAACTAGGGACAAAGCTGAAAATAGTTGGTAAAAGGGAAAATTTGTTTCTAAAATTTACTATTAGTGTAAGCGACAAAACCCGATGTTTCAGAATTTTTCTGCATTTTTGCATAGTGGTTTTTGCACATCAAATTAGTATTGCTCCTTTCAATTTGTTGTTTTTCTACTTTTTTACTTGCTAATCGAAAAAGAGAAATATTCAAAAACGATGTCATTACTAAAAGTATCCGAAAAAGAAACCACATTCGCCGGTAAATTTTTTTTACTTCTAGACACCGTTTTCGAAATTTTCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGTCATTCTGAACTAATGGTC</pcr_primer_p1>
		<pcr_primer_p2>CTATTTTCAGCTTTGTCCCTAGT</pcr_primer_p2>
		<pcr_amplicon_size>622</pcr_amplicon_size>
		<canonical_amplicon>GTTGTCATTCTGAACTAATGGTCCCCAAGGAGGCAGCTAACCAACTGAATTCCTTTCACCACAGAAAAGGGTGTGGTCATAGGGAACGGGAGATAGGAAGTGGGGCGAAAAAGCCGGTATTGCGCGTTGAGAGTTCGAGCCCGGTAGGAAGCTTTTTTTTTGAATTTTGAACACGGTTCAGAAATGAGTGAGGTATTATCCTTGTCTGAGAAAAAAAAGGTTGAGACGCAGAGAAAAAGTGTCTGTGTCTCCACCTTATGTGTGCTATTTAGGCTCTCCGCTTCGATATCGCTACCGTATTCAGACTGCAAAAAATACTCTCTAACCTTTTTTCTCAGACAAGCATAATATGCGAATGATTTTCTGAAAATGTTTCTCTTCTTGAATGAAATGGTAAAACAGAGTATCCTGTTTCTCGAGTTTTATTAGTTTCAAGTCGAGTTAAAAGATGATTAAACTCCAAATCTTTTGTTTTCATTTTTGTTTGGAGTCACTAAAAAACCTGGAAGAAAGTTTGATTTAAAAAATCAAAACAATTCAAGTTTTTTTTCTGGAGAGAAAACGCATAACTTTTTTCGATAAGGGCCGAAAGTCACATAACTAGGGACAAAGCTGAAAATAG</canonical_amplicon>
		<polymorphic_amplicon>GTTGTCATTCTGAACTAATGGTCCCCAAGGAGGCAGCTAACCAACTGAATTCCTTTCACCACAGAAAAGGGTGTGGTCATAGGGAACGGGAGATAGGAAGTGGGGCGAAAAAGCCGGTATTGCGCGTTGAGAGTTCGAGCCCGGTAGGAAGCTTTTTTTTTGAATTTTGAACACGGTTCAGAAATGAGTGAGGTATTATCCTTGTCTGAGAAAAAAAAGGTTGAGACGCAGAGAAAAAGTGTCTGTGTCTCCACCTTATGTGTGCTATTTAGGCTCTCCGCTTCGATATCGCTACCGTATTCAGACTGCAAAAAATACTCTCTAACCTTTTTTCTCAGACAAGCATAATATGCGAATGATTTTCTGAAAATGTTTCTCTTCTTGAATGAAATKGTAAAACAGAGTATCCTGTTTCTCGAGTTTTATTAGTTTCAAGTCGAGTTAAAAGATGATTAAACTCCAAATCTTTTGTTTTCATTTTTGTTTGGAGTCACTAAAAAACCTGGAAGAAAGTTTGATTTAAAAAATCAAAACAATTCAAGTTTTTTTTCTGGAGAGAAAACGCATAACTTTTTTCGATAAGGGCCGAAAGTCACATAACTAGGGACAAAGCTGAAAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36524</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>393852</contig_pos>
        <strand>+</strand>
        <context>CYCTARCTMC[C/T]AAAAAMCTMC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCC</left_flank>
        <right_flank>AAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAAAAGTTTTTCTGAAATTGTAACATTATTTTTTTAAGTAGTCATCCATTAACAGGGAGATTTTTCGGAGGATTTCCTGGGCCGTATGCATTCTACCGTAACGGTGTACAACGCTGAATGTCACTCTGCGTACTGCTGTCGTCCTCACCCTTATGTTTACCACCGGGCGTCCGCTCCTCTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGACGCATCTTCAATACTCACCCCGACAAGTTCAATTCCTCAAGGGGCGTATTTAAAGGTGGGGAGACATGAAAAAAAATAATGTTCTCTAAATTCCGTTTAAATATGCCCCTCCAGGAGTTGAACTTGTGGGGGCGAGGATTGAGGGTGCGGTGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCCGGCTCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACGCGGCGTAGA</canonical>
            <polymorphic>ATGAAAAGTTTTTCTGAAATTGTAACATTATTTTTTTAAGTAGTCATCCATTAACAGGGAGATTTTTCGGAGGATTTCCTGGGCCGTATGCATTCTACCGTAACGGTGTACAACGCTGAATGTCACTCTGCGTACTGCTGTCGTCCTCACCCTTATGTTTACCACCGGGCGTCCGCTCCTCTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGACGCATCTTCAATACTCACCCCGACAAGTTCAATTCCTCAAGGGGCGTATTTAAAGGTGGGGAGACATGAAAAAAAATAATGTTCTCTAAATTCCGTTTAAATATGCCCCTCCAGGAGTTGAACTTGTGGGGGCGAGGATTGAGGGTGCGGTGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCCGGCTCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCYAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACGCGGCGTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACGCAGTGTGACATTAAGC</pcr_primer_p1>
		<pcr_primer_p2>GATGAAGCCGTAAACATTTG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>GTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATC</canonical_amplicon>
		<polymorphic_amplicon>GTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCYAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36525</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>393991</contig_pos>
        <strand>+</strand>
        <context>TGATTTCCGG[A/T]TTTTTTTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGG</left_flank>
        <right_flank>TTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCGTCCTCACCCTTATGTTTACCACCGGGCGTCCGCTCCTCTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGACGCATCTTCAATACTCACCCCGACAAGTTCAATTCCTCAAGGGGCGTATTTAAAGGTGGGGAGACATGAAAAAAAATAATGTTCTCTAAATTCCGTTTAAATATGCCCCTCCAGGAGTTGAACTTGTGGGGGCGAGGATTGAGGGTGCGGTGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCCGGCTCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACGCGGCGTAGACATACACCGTACCACTCGGCGGTTTCTCCAATTGTGCCAGTTACTGGAAAAGACGTCATTTTTTGAAATTTATAACTTTGCCAAGAATGACCGAATTTAGGGGTTGAGAAGTTTAAGAAGGGGGAGGAACATGGAAAAC</canonical>
            <polymorphic>GTCGTCCTCACCCTTATGTTTACCACCGGGCGTCCGCTCCTCTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGACGCATCTTCAATACTCACCCCGACAAGTTCAATTCCTCAAGGGGCGTATTTAAAGGTGGGGAGACATGAAAAAAAATAATGTTCTCTAAATTCCGTTTAAATATGCCCCTCCAGGAGTTGAACTTGTGGGGGCGAGGATTGAGGGTGCGGTGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCCGGCTCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGTGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACCCTAACTCCAAAAAACCTCCGAAAAAACTCCTGTCCGCCACCTTCAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGWTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACGCGGCGTAGACATACACCGTACCACTCGGCGGTTTCTCCAATTGTGCCAGTTACTGGAAAAGACGTCATTTTTTGAAATTTATAACTTTGCCAAGAATGACCGAATTTAGGGGTTGAGAAGTTTAAGAAGGGGGAGGAACATGGAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAACAAAATTTGGAGAACAATA</pcr_primer_p1>
		<pcr_primer_p2>TGTTTGTGTTTTGAAGAATGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACA</canonical_amplicon>
		<polymorphic_amplicon>CAAACAAAATTTGGAGAACAATATTTCTTTTCATGTCCCCCCACCTTTGAACTATAAGAATTAGCATTGAATGCTCGCTCCATCGTAATCCCTTTGATTTCCGGWTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36526</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>394467</contig_pos>
        <strand>+</strand>
        <context>TGAGAAGTTT[A/T]AGAAGGGGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAATTTATAACTTTGCCAAGAATGACCGAATTTAGGGGTTGAGAAGTTT</left_flank>
        <right_flank>AGAAGGGGGAGGAACATGGAAAACTAAGTTTATAAATGTTCAAAAAATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACGCGGCGTAGACATACACCGTACCACTCGGCGGTTTCTCCAATTGTGCCAGTTACTGGAAAAGACGTCATTTTTTGAAATTTATAACTTTGCCAAGAATGACCGAATTTAGGGGTTGAGAAGTTTAAGAAGGGGGAGGAACATGGAAAACTAAGTTTATAAATGTTCAAAAAATTATACAAGTTCCGAATGCAAAATTTGAGAAAACTTGATACGAAACTGCTGCTTTACCAGTAAGAGCTAATTCACAATTGTAAAAAAATCAATTTGAAACAGAAAATACTTTTTTGTTCCCTAAAATTTATTTATTAAAATATATTATTATTATTGTCCGGAATTTGATAATTCATTATACATAAGGGGGACATGTGATTTTTCCAACTTTTTTCGGACTTTACAGCATGCATTCTGATGTGGTGGTGTACAGTGATTAGTGTTTACCGAAACTATTATGCCGCTTCCATAAATGACATCGGTCGGCTGCGCAGTTTACGCCACCGTAGCTCACCTGGTAGCAACGGGGCACCTATAACATTGGACTCAAAAGTTCAGCTCCTTGGGTGTATATGGACGGAAATTGTAGAAACTTCTTTTTTTATGATGTCCCCTCTTTTAAGGAATTAAACC</canonical>
            <polymorphic>ATCGTAATCCCTTTGATTTCCGGTTTTTTTTTCGAAAGGGAGTACGGTATCGCATTTTTGCAAATGTTTACGGCTTCATCGTTTACCTAATTTGTATACGTGCCATTTTGTGTTTACTTTTTTCAAATTCCTCTTTTTTTTCAGCTGTCATTCTTCAAAACACAAACAATTTCTTTGCAAAAACCACTCCTCAATTTTTCACCTTTCTCACCACTTTTTATTTTTTATTAATTTGGGAGTAAATTATTTCTCAAAATGTTTTCTCAATAATTTTAATCCTTCAAAATGGAATTCAAAAATAGAATTACATCATTTTTTCTTCAAAATTGCCCACAATCATTTTTTCCGTGTCTTGCACATAAGGGTATACAAAACGCGGCGTAGACATACACCGTACCACTCGGCGGTTTCTCCAATTGTGCCAGTTACTGGAAAAGACGTCATTTTTTGAAATTTATAACTTTGCCAAGAATGACCGAATTTAGGGGTTGAGAAGTTTWAGAAGGGGGAGGAACATGGAAAACTAAGTTTATAAATGTTCAAAAAATTATACAAGTTCCGAATGCAAAATTTGAGAAAACTTGATACGAAACTGCTGCTTTACCAGTAAGAGCTAATTCACAATTGTAAAAAAATCAATTTGAAACAGAAAATACTTTTTTGTTCCCTAAAATTTATTTATTAAAATATATTATTATTATTGTCCGGAATTTGATAATTCATTATACATAAGGGGGACATGTGATTTTTCCAACTTTTTTCGGACTTTACAGCATGCATTCTGATGTGGTGGTGTACAGTGATTAGTGTTTACCGAAACTATTATGCCGCTTCCATAAATGACATCGGTCGGCTGCGCAGTTTACGCCACCGTAGCTCACCTGGTAGCAACGGGGCACCTATAACATTGGACTCAAAAGTTCAGCTCCTTGGGTGTATATGGACGGAAATTGTAGAAACTTCTTTTTTTATGATGTCCCCTCTTTTAAGGAATTAAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>304 228 225 184 45 8 6</canonical_bands>
                <polymorphic_bands>409 304 228 45 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTAGACATACACCGTACCA</pcr_primer_p1>
		<pcr_primer_p2>AATTGTGAATTAGCTCTTACTGG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CGTAGACATACACCGTACCACTCGGCGGTTTCTCCAATTGTGCCAGTTACTGGAAAAGACGTCATTTTTTGAAATTTATAACTTTGCCAAGAATGACCGAATTTAGGGGTTGAGAAGTTTAAGAAGGGGGAGGAACATGGAAAACTAAGTTTATAAATGTTCAAAAAATTATACAAGTTCCGAATGCAAAATTTGAGAAAACTTGATACGAAACTGCTGCTTTACCAGTAAGAGCTAATTCACAATT</canonical_amplicon>
		<polymorphic_amplicon>CGTAGACATACACCGTACCACTCGGCGGTTTCTCCAATTGTGCCAGTTACTGGAAAAGACGTCATTTTTTGAAATTTATAACTTTGCCAAGAATGACCGAATTTAGGGGTTGAGAAGTTTWAGAAGGGGGAGGAACATGGAAAACTAAGTTTATAAATGTTCAAAAAATTATACAAGTTCCGAATGCAAAATTTGAGAAAACTTGATACGAAACTGCTGCTTTACCAGTAAGAGCTAATTCACAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36527</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>395595</contig_pos>
        <strand></strand>
        <context>gccatggtat[T/C]TGTGTATCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTAT</left_flank>
        <right_flank>TGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTG</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCCCTTTTCGCAAAAAAATCGCTGTTTTAGAATGGCACAAAATATGATTTTGAAATTATTGACACACTACGAACTTCTTATACCGTAAAAACTGTAATACAACGCCCCCTCTAATACAACGCCACCGACAGACCACCTCCGAAAAATACAGCGCCACCCTCTAATAGAACACCGCCTGTAATATAACGCACCTTGAAGGATAAAAACGATTTCCGAGCAGATTACAGTGATGGATTAGATTGGTTGCAATGCACTTTTTGAATGTTTAAAAACGACGACGATACTCGCGAAGTGATGATAGTGACATTTCTCTTGATTTCTATTTTTAAGTTAATTTTATTACCATTTTTGTTGATTTTTTTCCTGTTTTTCGATTGTTGATGACAAACTTTTTTCAAAAATTTGTCTTCGAAAAATAGAACGTCACCATCTAATAAAACGCCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACT</canonical>
            <polymorphic>TCCCCTTTTCGCAAAAAAATCGCTGTTTTAGAATGGCACAAAATATGATTTTGAAATTATTGACACACTACGAACTTCTTATACCGTAAAAACTGTAATACAACGCCCCCTCTAATACAACGCCACCGACAGACCACCTCCGAAAAATACAGCGCCACCCTCTAATAGAACACCGCCTGTAATATAACGCACCTTGAAGGATAAAAACGATTTCCGAGCAGATTACAGTGATGGATTAGATTGGTTGCAATGCACTTTTTGAATGTTTAAAAACGACGACGATACTCGCGAAGTGATGATAGTGACATTTCTCTTGATTTCTATTTTTAAGTTAATTTTATTACCATTTTTGTTGATTTTTTTCCTGTTTTTCGATTGTTGATGACAAACTTTTTTCAAAAATTTGTCTTCGAAAAATAGAACGTCACCATCTAATAAAACGCCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATYTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAAATTATTGACACACTACGA</pcr_primer_p1>
		<pcr_primer_p2>GGATTTTGATGAAAAAGTTTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>623</pcr_amplicon_size>
		<canonical_amplicon>TTGAAATTATTGACACACTACGAACTTCTTATACCGTAAAAACTGTAATACAACGCCCCCTCTAATACAACGCCACCGACAGACCACCTCCGAAAAATACAGCGCCACCCTCTAATAGAACACCGCCTGTAATATAACGCACCTTGAAGGATAAAAACGATTTCCGAGCAGATTACAGTGATGGATTAGATTGGTTGCAATGCACTTTTTGAATGTTTAAAAACGACGACGATACTCGCGAAGTGATGATAGTGACATTTCTCTTGATTTCTATTTTTAAGTTAATTTTATTACCATTTTTGTTGATTTTTTTCCTGTTTTTCGATTGTTGATGACAAACTTTTTTCAAAAATTTGTCTTCGAAAAATAGAACGTCACCATCTAATAAAACGCCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCC</canonical_amplicon>
		<polymorphic_amplicon>TTGAAATTATTGACACACTACGAACTTCTTATACCGTAAAAACTGTAATACAACGCCCCCTCTAATACAACGCCACCGACAGACCACCTCCGAAAAATACAGCGCCACCCTCTAATAGAACACCGCCTGTAATATAACGCACCTTGAAGGATAAAAACGATTTCCGAGCAGATTACAGTGATGGATTAGATTGGTTGCAATGCACTTTTTGAATGTTTAAAAACGACGACGATACTCGCGAAGTGATGATAGTGACATTTCTCTTGATTTCTATTTTTAAGTTAATTTTATTACCATTTTTGTTGATTTTTTTCCTGTTTTTCGATTGTTGATGACAAACTTTTTTCAAAAATTTGTCTTCGAAAAATAGAACGTCACCATCTAATAAAACGCCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATYTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36528</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>395652</contig_pos>
        <strand>+</strand>
        <context>ATTGTTTTTT[A/T]ARGGCAACTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTT</left_flank>
        <right_flank>AAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTGACACACTACGAACTTCTTATACCGTAAAAACTGTAATACAACGCCCCCTCTAATACAACGCCACCGACAGACCACCTCCGAAAAATACAGCGCCACCCTCTAATAGAACACCGCCTGTAATATAACGCACCTTGAAGGATAAAAACGATTTCCGAGCAGATTACAGTGATGGATTAGATTGGTTGCAATGCACTTTTTGAATGTTTAAAAACGACGACGATACTCGCGAAGTGATGATAGTGACATTTCTCTTGATTTCTATTTTTAAGTTAATTTTATTACCATTTTTGTTGATTTTTTTCCTGTTTTTCGATTGTTGATGACAAACTTTTTTCAAAAATTTGTCTTCGAAAAATAGAACGTCACCATCTAATAAAACGCCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCT</canonical>
            <polymorphic>TATTGACACACTACGAACTTCTTATACCGTAAAAACTGTAATACAACGCCCCCTCTAATACAACGCCACCGACAGACCACCTCCGAAAAATACAGCGCCACCCTCTAATAGAACACCGCCTGTAATATAACGCACCTTGAAGGATAAAAACGATTTCCGAGCAGATTACAGTGATGGATTAGATTGGTTGCAATGCACTTTTTGAATGTTTAAAAACGACGACGATACTCGCGAAGTGATGATAGTGACATTTCTCTTGATTTCTATTTTTAAGTTAATTTTATTACCATTTTTGTTGATTTTTTTCCTGTTTTTCGATTGTTGATGACAAACTTTTTTCAAAAATTTGTCTTCGAAAAATAGAACGTCACCATCTAATAAAACGCCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTWAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>224 210 184 129 106 63 60 19 5</canonical_bands>
                <polymorphic_bands>287 210 184 129 106 60 19 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGTATCAGAAAAGCATATCTAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTATCTCATCGGAATGGATTT</pcr_primer_p2>
		<pcr_amplicon_size>188</pcr_amplicon_size>
		<canonical_amplicon>TGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAA</canonical_amplicon>
		<polymorphic_amplicon>TGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTWAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36529</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>395670</contig_pos>
        <strand>+</strand>
        <context>CTTTCGAGCM[C/T]TGAAAAAATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCA</left_flank>
        <right_flank>TGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAA</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTATACCGTAAAAACTGTAATACAACGCCCCCTCTAATACAACGCCACCGACAGACCACCTCCGAAAAATACAGCGCCACCCTCTAATAGAACACCGCCTGTAATATAACGCACCTTGAAGGATAAAAACGATTTCCGAGCAGATTACAGTGATGGATTAGATTGGTTGCAATGCACTTTTTGAATGTTTAAAAACGACGACGATACTCGCGAAGTGATGATAGTGACATTTCTCTTGATTTCTATTTTTAAGTTAATTTTATTACCATTTTTGTTGATTTTTTTCCTGTTTTTCGATTGTTGATGACAAACTTTTTTCAAAAATTTGTCTTCGAAAAATAGAACGTCACCATCTAATAAAACGCCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAACTG</canonical>
            <polymorphic>TTCTTATACCGTAAAAACTGTAATACAACGCCCCCTCTAATACAACGCCACCGACAGACCACCTCCGAAAAATACAGCGCCACCCTCTAATAGAACACCGCCTGTAATATAACGCACCTTGAAGGATAAAAACGATTTCCGAGCAGATTACAGTGATGGATTAGATTGGTTGCAATGCACTTTTTGAATGTTTAAAAACGACGACGATACTCGCGAAGTGATGATAGTGACATTTCTCTTGATTTCTATTTTTAAGTTAATTTTATTACCATTTTTGTTGATTTTTTTCCTGTTTTTCGATTGTTGATGACAAACTTTTTTCAAAAATTTGTCTTCGAAAAATAGAACGTCACCATCTAATAAAACGCCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCAYTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGTATCAGAAAAGCATATCTAAAG</pcr_primer_p1>
		<pcr_primer_p2>TTATCTCATCGGAATGGATTT</pcr_primer_p2>
		<pcr_amplicon_size>188</pcr_amplicon_size>
		<canonical_amplicon>TGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAA</canonical_amplicon>
		<polymorphic_amplicon>TGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCAYTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36530</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>395716</contig_pos>
        <strand>+</strand>
        <context>TCARATTATT[A/G]AAAAAATGAW</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATT</left_flank>
        <right_flank>AAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCACCGACAGACCACCTCCGAAAAATACAGCGCCACCCTCTAATAGAACACCGCCTGTAATATAACGCACCTTGAAGGATAAAAACGATTTCCGAGCAGATTACAGTGATGGATTAGATTGGTTGCAATGCACTTTTTGAATGTTTAAAAACGACGACGATACTCGCGAAGTGATGATAGTGACATTTCTCTTGATTTCTATTTTTAAGTTAATTTTATTACCATTTTTGTTGATTTTTTTCCTGTTTTTCGATTGTTGATGACAAACTTTTTTCAAAAATTTGTCTTCGAAAAATAGAACGTCACCATCTAATAAAACGCCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAACTGAAGACTTCAAAAAATTTTCCAGTTGCATATTTTCAAGAAGTTCCAC</canonical>
            <polymorphic>GCCACCGACAGACCACCTCCGAAAAATACAGCGCCACCCTCTAATAGAACACCGCCTGTAATATAACGCACCTTGAAGGATAAAAACGATTTCCGAGCAGATTACAGTGATGGATTAGATTGGTTGCAATGCACTTTTTGAATGTTTAAAAACGACGACGATACTCGCGAAGTGATGATAGTGACATTTCTCTTGATTTCTATTTTTAAGTTAATTTTATTACCATTTTTGTTGATTTTTTTCCTGTTTTTCGATTGTTGATGACAAACTTTTTTCAAAAATTTGTCTTCGAAAAATAGAACGTCACCATCTAATAAAACGCCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTRAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAACTGAAGACTTCAAAAAATTTTCCAGTTGCATATTTTCAAGAAGTTCCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>224 184 146 129 106 83 63 60 5</canonical_bands>
                <polymorphic_bands>247 224 146 129 106 83 60 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCAAGCTTGATTTATTTTTGTA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCAACGCTTTTGATAACTA</pcr_primer_p2>
		<pcr_amplicon_size>195</pcr_amplicon_size>
		<canonical_amplicon>AGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTRAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36531</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>395726</contig_pos>
        <strand>+</strand>
        <context>RAAAAAATGA[A/T]AAATATTGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGA</left_flank>
        <right_flank>AAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACCACCTCCGAAAAATACAGCGCCACCCTCTAATAGAACACCGCCTGTAATATAACGCACCTTGAAGGATAAAAACGATTTCCGAGCAGATTACAGTGATGGATTAGATTGGTTGCAATGCACTTTTTGAATGTTTAAAAACGACGACGATACTCGCGAAGTGATGATAGTGACATTTCTCTTGATTTCTATTTTTAAGTTAATTTTATTACCATTTTTGTTGATTTTTTTCCTGTTTTTCGATTGTTGATGACAAACTTTTTTCAAAAATTTGTCTTCGAAAAATAGAACGTCACCATCTAATAAAACGCCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAACTGAAGACTTCAAAAAATTTTCCAGTTGCATATTTTCAAGAAGTTCCACAGTTTTGATT</canonical>
            <polymorphic>GACCACCTCCGAAAAATACAGCGCCACCCTCTAATAGAACACCGCCTGTAATATAACGCACCTTGAAGGATAAAAACGATTTCCGAGCAGATTACAGTGATGGATTAGATTGGTTGCAATGCACTTTTTGAATGTTTAAAAACGACGACGATACTCGCGAAGTGATGATAGTGACATTTCTCTTGATTTCTATTTTTAAGTTAATTTTATTACCATTTTTGTTGATTTTTTTCCTGTTTTTCGATTGTTGATGACAAACTTTTTTCAAAAATTTGTCTTCGAAAAATAGAACGTCACCATCTAATAAAACGCCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAWAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAACTGAAGACTTCAAAAAATTTTCCAGTTGCATATTTTCAAGAAGTTCCACAGTTTTGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCAAGCTTGATTTATTTTTGTA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCAACGCTTTTGATAACTA</pcr_primer_p2>
		<pcr_amplicon_size>195</pcr_amplicon_size>
		<canonical_amplicon>AGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAWAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36532</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>395864</contig_pos>
        <strand></strand>
        <context>tctctttcgg[C/T]tggattttta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGG</left_flank>
        <right_flank>TGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACGACGACGATACTCGCGAAGTGATGATAGTGACATTTCTCTTGATTTCTATTTTTAAGTTAATTTTATTACCATTTTTGTTGATTTTTTTCCTGTTTTTCGATTGTTGATGACAAACTTTTTTCAAAAATTTGTCTTCGAAAAATAGAACGTCACCATCTAATAAAACGCCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAACTGAAGACTTCAAAAAATTTTCCAGTTGCATATTTTCAAGAAGTTCCACAGTTTTGATTTTCTTTTGATGGGTCGTGTGCTGCCGTATCCTTATTTCCATCTTTTTATTTCATTTCTTCGAATGCTTTTGTACTTTGATCCGAAATGAAGCCCAAAGTTCGATGAACAAAACATCACTTTTTCTGGGACTCCGCCCT</canonical>
            <polymorphic>AAAACGACGACGATACTCGCGAAGTGATGATAGTGACATTTCTCTTGATTTCTATTTTTAAGTTAATTTTATTACCATTTTTGTTGATTTTTTTCCTGTTTTTCGATTGTTGATGACAAACTTTTTTCAAAAATTTGTCTTCGAAAAATAGAACGTCACCATCTAATAAAACGCCCCCTGTAATATAACGCCATCTCGAGACCCCTCCGAAAAATATAGCGCCATGGTATTTGTGTATCAGAAAAGCATATCTAAAGCAAGCTTGATTTATTTTTGTATTGTTTTTTTAAGGCAACTTTCGAGCATTGAAAAAATGTTCCAGAATTTCCTTTCCGGAAAGTTCAGATTATTAAAAAAATGAAAAATATTGTGTTTTATAAGTAGAAACTTTTTCATCAAAATCCATTCCGATGAGATAAGCCGGTGATAGTTATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGYTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATAACTTTTGATACTGTCGGAGAAATATGGTTTTTTTACGGATACGTATACGTTAAAACACTATAACAATCTGTTGGCTTTCGAAAACTGAAGACTTCAAAAAATTTTCCAGTTGCATATTTTCAAGAAGTTCCACAGTTTTGATTTTCTTTTGATGGGTCGTGTGCTGCCGTATCCTTATTTCCATCTTTTTATTTCATTTCTTCGAATGCTTTTGTACTTTGATCCGAAATGAAGCCCAAAGTTCGATGAACAAAACATCACTTTTTCTGGGACTCCGCCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>261 174 160 159 86 79 47 34</canonical_bands>
                <polymorphic_bands>261 253 160 159 86 47 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCAAAAGCGTTGAAAATGA</pcr_primer_p1>
		<pcr_primer_p2>TATTGTACGAGGCTGGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>288</pcr_amplicon_size>
		<canonical_amplicon>TATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGCTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATA</canonical_amplicon>
		<polymorphic_amplicon>TATCAAAAGCGTTGAAAATGAGTACAGAAATAGGAGTTTGCCATTTCAAAACCGTTTATCTCTTTCGGYTGGATTTTTACAAAAAAGTTGTCAACAACAAAATTAAGTCTCTATTCTTGTTTGGTATACTCCCAAAATTTCAAACAAATAAAAACATTTGGAACTACTTTTGTAGGCGTTCTGTTTTGAATATTTTCCACTGGCACTGTATTCATTCTCAAAGTTTTCCTTTTAAGACAAAGCCTTCCAGATGATTTTCGAAATGCCTCTTTCCAGCCTCGTACAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36533</snp_id>
        <super_contig>c011100858.Contig3</super_contig>
        <contig_pos>479558</contig_pos>
        <strand>+</strand>
        <context>TCTTATACCT[C/T]ACACATGTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAGAAAAGGATACGAACGCATTATAGTGGCAGCTACTTTTCTTATACCT</left_flank>
        <right_flank>ACACATGTTAAACAGTATTTAATTAGCCATGAATGAGACGCCTTATTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTTCACAGTTTCAAAGAATTGATTCGAAGAGAATAAGTAATAAACTCTCAATAAGCGTTAAACAGATGCAACAATTTTTAAAGAAAATTTACGATTTCAAAAAGTTCAAAAATCTCTATACCATCAGGACCTGTTAATATGGCATCTTCCAGTGTGTAGAAAAAAAATCTCCAGTCCAAAGTACACTACAAAGTTTGACTACATATAAAAAACCGTGATGGGTGGTCACACACTTTTGACCTCAATGTTCTTTTTTTCTTTTCTTTTATCCCGTTTTTTGCACTTCGTTTTCTATTGAAATGAGAAACTAACTAAATATGTGTGGAGAGAAAGAAAACAGAAGGAGAGCTGTGAAGGAGAGAAGTGTTATTTTGAACTTTGAGTGGAGGGGAACAGAGGTCAAAGAATGCACTTTTCGGAGAAGGGTTACTGTAGGAATGGAGGTGGAGAAAAGGATACGAACGCATTATAGTGGCAGCTACTTTTCTTATACCTCACACATGTTAAACAGTATTTAATTAGCCATGAATGAGACGCCTTATTTTTTGAAGTTAAAAGAAATTCAAGTCTTTAAAAAAATATGTTTCACATTTTCTATAAGTCTTGTTGAATCCTAGCTGGCCAATAGATGAGATATAGATTGTCAAATACACTTTTCAGTATAATTTCAGCTAACATATTAATAAGATTTTCAGCCTAAATTTTTTTCTAGACGAACTATAGGATAATGAAGAACAAAGTGAGATGCACATATTCAAAATAAAAACGTACGCAGATGATTGAATATGCGATAACATATAGGTGACAACAATCACAATAAATGATCTTCGATGTATTTTTTTTTTCAAAACGAACATGAAGAATAGAAGGCGAAATTCAATTGAATTGGTCTGTGATGGATAATAATGAAGTTATTTTGAATGGAGTTTGAACATACAGAGGAATAACACTGGGAGTTGCTTAATTGAAAATAGAGCAATTAACTTCAGTTAAAAA</canonical>
            <polymorphic>TTTTTTTCACAGTTTCAAAGAATTGATTCGAAGAGAATAAGTAATAAACTCTCAATAAGCGTTAAACAGATGCAACAATTTTTAAAGAAAATTTACGATTTCAAAAAGTTCAAAAATCTCTATACCATCAGGACCTGTTAATATGGCATCTTCCAGTGTGTAGAAAAAAAATCTCCAGTCCAAAGTACACTACAAAGTTTGACTACATATAAAAAACCGTGATGGGTGGTCACACACTTTTGACCTCAATGTTCTTTTTTTCTTTTCTTTTATCCCGTTTTTTGCACTTCGTTTTCTATTGAAATGAGAAACTAACTAAATATGTGTGGAGAGAAAGAAAACAGAAGGAGAGCTGTGAAGGAGAGAAGTGTTATTTTGAACTTTGAGTGGAGGGGAACAGAGGTCAAAGAATGCACTTTTCGGAGAAGGGTTACTGTAGGAATGGAGGTGGAGAAAAGGATACGAACGCATTATAGTGGCAGCTACTTTTCTTATACCTYACACATGTTAAACAGTATTTAATTAGCCATGAATGAGACGCCTTATTTTTTGAAGTTAAAAGAAATTCAAGTCTTTAAAAAAATATGTTTCACATTTTCTATAAGTCTTGTTGAATCCTAGCTGGCCAATAGATGAGATATAGATTGTCAAATACACTTTTCAGTATAATTTCAGCTAACATATTAATAAGATTTTCAGCCTAAATTTTTTTCTAGACGAACTATAGGATAATGAAGAACAAAGTGAGATGCACATATTCAAAATAAAAACGTACGCAGATGATTGAATATGCGATAACATATAGGTGACAACAATCACAATAAATGATCTTCGATGTATTTTTTTTTTCAAAACGAACATGAAGAATAGAAGGCGAAATTCAATTGAATTGGTCTGTGATGGATAATAATGAAGTTATTTTGAATGGAGTTTGAACATACAGAGGAATAACACTGGGAGTTGCTTAATTGAAAATAGAGCAATTAACTTCAGTTAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>149 90 89 81 64 55 54 50 47 40 35 32 29 29 28 26 23 19 13 10 9 7 7 4 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>149 90 89 81 64 55 54 50 47 40 35 32 29 29 28 26 25 19 13 10 9 7 7 4 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGTTATTTTGAACTTTGAGTGG</pcr_primer_p1>
		<pcr_primer_p2>TCAACAAGACTTATAGAAAATGTGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTGTTATTTTGAACTTTGAGTGGAGGGGAACAGAGGTCAAAGAATGCACTTTTCGGAGAAGGGTTACTGTAGGAATGGAGGTGGAGAAAAGGATACGAACGCATTATAGTGGCAGCTACTTTTCTTATACCTCACACATGTTAAACAGTATTTAATTAGCCATGAATGAGACGCCTTATTTTTTGAAGTTAAAAGAAATTCAAGTCTTTAAAAAAATATGTTTCACATTTTCTATAAGTCTTGTTGA</canonical_amplicon>
		<polymorphic_amplicon>GTGTTATTTTGAACTTTGAGTGGAGGGGAACAGAGGTCAAAGAATGCACTTTTCGGAGAAGGGTTACTGTAGGAATGGAGGTGGAGAAAAGGATACGAACGCATTATAGTGGCAGCTACTTTTCTTATACCTYACACATGTTAAACAGTATTTAATTAGCCATGAATGAGACGCCTTATTTTTTGAAGTTAAAAGAAATTCAAGTCTTTAAAAAAATATGTTTCACATTTTCTATAAGTCTTGTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36534</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>48086</contig_pos>
        <strand>+</strand>
        <context>CTGATGAATT[C/T]TAGCTCAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATT</left_flank>
        <right_flank>TAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGTCCACCCGGTCACATCCGCAATTCTCGTTTTTCGATTTAGCCAAAAATTATATTGAGACTTTCATCAAGGTTTGTGATTTGGAAAATTCCATAAAAATTCAAAAAAAAATCATTTTTTCAGGGCAGAAATCGAGCCGACAGCAGAATGGTCGTCGGAAGGGAGAATGATCGATATTTTCTGCTGACAACACAGGGAAAATATCCGGAAAATGTGAAAGTACGCGAAAAATGACACAGAAAATCTGAAAAATTGAAAAAAAAATGACCAAAAACGAGATTTTTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTC</canonical>
            <polymorphic>CATGTCCACCCGGTCACATCCGCAATTCTCGTTTTTCGATTTAGCCAAAAATTATATTGAGACTTTCATCAAGGTTTGTGATTTGGAAAATTCCATAAAAATTCAAAAAAAAATCATTTTTTCAGGGCAGAAATCGAGCCGACAGCAGAATGGTCGTCGGAAGGGAGAATGATCGATATTTTCTGCTGACAACACAGGGAAAATATCCGGAAAATGTGAAAGTACGCGAAAAATGACACAGAAAATCTGAAAAATTGAAAAAAAAATGACCAAAAACGAGATTTTTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTYTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>196 173 160 88 60 42 42 39 33 21 21 21 21 21 15 13 12 11 11</canonical_bands>
                <polymorphic_bands>196 194 160 88 60 42 42 39 33 21 21 21 21 15 13 12 11 11</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGATAATCTGTAATCTCCTCCT</pcr_primer_p1>
		<pcr_primer_p2>CCGATTTTGAGTTAACATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>224</pcr_amplicon_size>
		<canonical_amplicon>AATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGG</canonical_amplicon>
		<polymorphic_amplicon>AATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTYTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36535</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>48098</contig_pos>
        <strand>+</strand>
        <context>AGCTCAAAAA[C/T]GATGAATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAA</left_flank>
        <right_flank>GATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCACATCCGCAATTCTCGTTTTTCGATTTAGCCAAAAATTATATTGAGACTTTCATCAAGGTTTGTGATTTGGAAAATTCCATAAAAATTCAAAAAAAAATCATTTTTTCAGGGCAGAAATCGAGCCGACAGCAGAATGGTCGTCGGAAGGGAGAATGATCGATATTTTCTGCTGACAACACAGGGAAAATATCCGGAAAATGTGAAAGTACGCGAAAAATGACACAGAAAATCTGAAAAATTGAAAAAAAAATGACCAAAAACGAGATTTTTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAAT</canonical>
            <polymorphic>GTCACATCCGCAATTCTCGTTTTTCGATTTAGCCAAAAATTATATTGAGACTTTCATCAAGGTTTGTGATTTGGAAAATTCCATAAAAATTCAAAAAAAAATCATTTTTTCAGGGCAGAAATCGAGCCGACAGCAGAATGGTCGTCGGAAGGGAGAATGATCGATATTTTCTGCTGACAACACAGGGAAAATATCCGGAAAATGTGAAAGTACGCGAAAAATGACACAGAAAATCTGAAAAATTGAAAAAAAAATGACCAAAAACGAGATTTTTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAAYGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGATAATCTGTAATCTCCTCCT</pcr_primer_p1>
		<pcr_primer_p2>CCGATTTTGAGTTAACATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>224</pcr_amplicon_size>
		<canonical_amplicon>AATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGG</canonical_amplicon>
		<polymorphic_amplicon>AATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAAYGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36536</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>48239</contig_pos>
        <strand>+</strand>
        <context>CTCAAAAATG[A/G]TCWATTTTKG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATG</left_flank>
        <right_flank>TCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGTCGGAAGGGAGAATGATCGATATTTTCTGCTGACAACACAGGGAAAATATCCGGAAAATGTGAAAGTACGCGAAAAATGACACAGAAAATCTGAAAAATTGAAAAAAAAATGACCAAAAACGAGATTTTTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAAT</canonical>
            <polymorphic>TCGTCGGAAGGGAGAATGATCGATATTTTCTGCTGACAACACAGGGAAAATATCCGGAAAATGTGAAAGTACGCGAAAAATGACACAGAAAATCTGAAAAATTGAAAAAAAAATGACCAAAAACGAGATTTTTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGRTCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>502 477 21</canonical_bands>
                <polymorphic_bands>523 477</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>460 344 158 21 17</canonical_bands>
                <polymorphic_bands>460 344 179 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCAATTTGGCTTGAAAATG</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAGTCAGAATTTGGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGRTCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36537</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>48242</contig_pos>
        <strand>+</strand>
        <context>AAAAATGRTC[A/T]ATTTTKGCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATC</left_flank>
        <right_flank>ATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGGAAGGGAGAATGATCGATATTTTCTGCTGACAACACAGGGAAAATATCCGGAAAATGTGAAAGTACGCGAAAAATGACACAGAAAATCTGAAAAATTGAAAAAAAAATGACCAAAAACGAGATTTTTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTC</canonical>
            <polymorphic>TCGGAAGGGAGAATGATCGATATTTTCTGCTGACAACACAGGGAAAATATCCGGAAAATGTGAAAGTACGCGAAAAATGACACAGAAAATCTGAAAAATTGAAAAAAAAATGACCAAAAACGAGATTTTTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCWATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>505 474 21</canonical_bands>
                <polymorphic_bands>526 474</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>96 77 72 54 43 42 42 39 38 33 21 21 21 21 21 21 21 21 21 21 21 21 20 20 20 20 19 18 15 14 13 13 13 12 8 7</canonical_bands>
                <polymorphic_bands>96 77 72 54 43 42 42 42 39 38 33 21 21 21 21 21 21 21 21 21 21 20 20 20 20 19 18 15 14 13 13 13 12 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCAATTTGGCTTGAAAATG</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAGTCAGAATTTGGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCWATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36538</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>48248</contig_pos>
        <strand>+</strand>
        <context>GRTCWATTTT[G/T]GCTTARAAST</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTT</left_flank>
        <right_flank>GCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGAGAATGATCGATATTTTCTGCTGACAACACAGGGAAAATATCCGGAAAATGTGAAAGTACGCGAAAAATGACACAGAAAATCTGAAAAATTGAAAAAAAAATGACCAAAAACGAGATTTTTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAAT</canonical>
            <polymorphic>GGGAGAATGATCGATATTTTCTGCTGACAACACAGGGAAAATATCCGGAAAATGTGAAAGTACGCGAAAAATGACACAGAAAATCTGAAAAATTGAAAAAAAAATGACCAAAAACGAGATTTTTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTKGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAATTTGGCTTGAAAATG</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAGTCAGAATTTGGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTKGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36539</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>48254</contig_pos>
        <strand>+</strand>
        <context>TTTTKGCTTA[A/G]AASTGMTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTA</left_flank>
        <right_flank>AAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGATCGATATTTTCTGCTGACAACACAGGGAAAATATCCGGAAAATGTGAAAGTACGCGAAAAATGACACAGAAAATCTGAAAAATTGAAAAAAAAATGACCAAAAACGAGATTTTTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAAC</canonical>
            <polymorphic>ATGATCGATATTTTCTGCTGACAACACAGGGAAAATATCCGGAAAATGTGAAAGTACGCGAAAAATGACACAGAAAATCTGAAAAATTGAAAAAAAAATGACCAAAAACGAGATTTTTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTARAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCAATTTGGCTTGAAAATG</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAGTCAGAATTTGGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTARAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36540</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>48257</contig_pos>
        <strand>+</strand>
        <context>TKGCTTARAA[C/G]TGMTGAATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAA</left_flank>
        <right_flank>TGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGATATTTTCTGCTGACAACACAGGGAAAATATCCGGAAAATGTGAAAGTACGCGAAAAATGACACAGAAAATCTGAAAAATTGAAAAAAAAATGACCAAAAACGAGATTTTTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTG</canonical>
            <polymorphic>ATCGATATTTTCTGCTGACAACACAGGGAAAATATCCGGAAAATGTGAAAGTACGCGAAAAATGACACAGAAAATCTGAAAAATTGAAAAAAAAATGACCAAAAACGAGATTTTTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAASTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>435 180 177 100 41 24 23 20</canonical_bands>
                <polymorphic_bands>615 177 100 41 24 23 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCAATTTGGCTTGAAAATG</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAGTCAGAATTTGGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAASTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36541</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>48291</contig_pos>
        <strand>+</strand>
        <context>AYGAATTTAT[G/T]TTGKAAAGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTAT</left_flank>
        <right_flank>TTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCGGAAAATGTGAAAGTACGCGAAAAATGACACAGAAAATCTGAAAAATTGAAAAAAAAATGACCAAAAACGAGATTTTTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCCGAGAAAGCGGGTGGAATCGTTG</canonical>
            <polymorphic>TCCGGAAAATGTGAAAGTACGCGAAAAATGACACAGAAAATCTGAAAAATTGAAAAAAAAATGACCAAAAACGAGATTTTTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATKTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCCGAGAAAGCGGGTGGAATCGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>328 322 178 170 2</canonical_bands>
                <polymorphic_bands>650 178 170 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCAATTTGGCTTGAAAATG</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAGTCAGAATTTGGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATKTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36542</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>48295</contig_pos>
        <strand>+</strand>
        <context>ATTTATKTTG[G/T]AAAGTCAAST</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTG</left_flank>
        <right_flank>AAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAATGTGAAAGTACGCGAAAAATGACACAGAAAATCTGAAAAATTGAAAAAAAAATGACCAAAAACGAGATTTTTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCCGAGAAAGCGGGTGGAATCGTTGTTGA</canonical>
            <polymorphic>GAAAATGTGAAAGTACGCGAAAAATGACACAGAAAATCTGAAAAATTGAAAAAAAAATGACCAAAAACGAGATTTTTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGKAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCCGAGAAAGCGGGTGGAATCGTTGTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>328 322 182 168</canonical_bands>
                <polymorphic_bands>650 182 168</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCAATTTGGCTTGAAAATG</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAGTCAGAATTTGGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGKAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36543</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>48304</contig_pos>
        <strand>+</strand>
        <context>GKAAAGTCAA[C/G]TWTGWCTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAA</left_flank>
        <right_flank>TATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGTACGCGAAAAATGACACAGAAAATCTGAAAAATTGAAAAAAAAATGACCAAAAACGAGATTTTTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCCGAGAAAGCGGGTGGAATCGTTGTTGACGAGTTGAA</canonical>
            <polymorphic>AAAGTACGCGAAAAATGACACAGAAAATCTGAAAAATTGAAAAAAAAATGACCAAAAACGAGATTTTTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAASTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCCGAGAAAGCGGGTGGAATCGTTGTTGACGAGTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>77 72 59 54 43 42 42 39 38 34 33 23 21 21 21 21 21 21 21 21 21 21 21 21 20 20 20 19 18 15 14 13 13 13 12 8 7</canonical_bands>
                <polymorphic_bands>77 72 60 59 54 43 42 39 38 34 33 23 21 21 21 21 21 21 21 21 21 21 21 21 20 20 20 19 15 14 13 13 13 12 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCAATTTGGCTTGAAAATG</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAGTCAGAATTTGGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAASTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36544</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>48309</contig_pos>
        <strand>+</strand>
        <context>GTCAASTWTG[A/T]CTCAAAAATG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATG</left_flank>
        <right_flank>CTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGCGAAAAATGACACAGAAAATCTGAAAAATTGAAAAAAAAATGACCAAAAACGAGATTTTTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCCGAGAAAGCGGGTGGAATCGTTGTTGACGAGTTGAAAAAGC</canonical>
            <polymorphic>ACGCGAAAAATGACACAGAAAATCTGAAAAATTGAAAAAAAAATGACCAAAAACGAGATTTTTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGWCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCCGAGAAAGCGGGTGGAATCGTTGTTGACGAGTTGAAAAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>165 106 78 73 63 42 42 42 42 42 39 33 31 25 21 21 21 21 21 21 21 20 10</canonical_bands>
                <polymorphic_bands>165 106 81 78 73 63 42 42 42 42 33 31 25 21 21 21 21 21 21 21 20 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCAATTTGGCTTGAAAATG</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAGTCAGAATTTGGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGWCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36545</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>48327</contig_pos>
        <strand>+</strand>
        <context>ATGATGAWTT[A/T]TCGCTTGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTT</left_flank>
        <right_flank>TCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATCTGAAAAATTGAAAAAAAAATGACCAAAAACGAGATTTTTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCCGAGAAAGCGGGTGGAATCGTTGTTGACGAGTTGAAAAAGCTCACTCTTCCATATGGTT</canonical>
            <polymorphic>AAAATCTGAAAAATTGAAAAAAAAATGACCAAAAACGAGATTTTTAGGGGAAAAAATTTTTTCAAAAAAAATTTTTTTTGAAATTTTGACTTAATGATGAATCTTAATGATAATCTGTAATCTCCTCCTTAAAATCTTGATTTTCGGCCCAAAAATTGTACATTTTTTTCAGTTGAAGCTTTGAAATAGTCAATTTTGACTGAAAAATAGTCAATTTTAGCTCAAAAATGGTCAATTTTGGCTTAAAACTGATGAATTCTAGCTCAAAAATGATGAATTTTGGCTTTAAAATGATGAGTTTTGGCCCATGAATGTTAACTCAAAATCGGCCATATTTGGCTCGAAAACGGTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTWTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAAATCGGTCATTTTCACTCAAAAATGACGAATTTATCTTAAAAAGGTTATTTTGGCTCGAAAATGATAAATTTTGGCTTAAAATTGGTCAATTTCGGCTTAAAAACGACGAATTTTGTCTTCAAAATTATGAATTTTAGCTCAAAAATGATGAATTTCGACTCAAAATGTTCAATTTTACCTCAAAAATCGTGAATTTTGGGCCAAAAATGGTCTTAAAAATGATGAATCTACACTCTAAAATAACGAATTTTGCTCAAAAACGATGAATTTTAGCTTAAAATTTTCCGAAAAAAACGCAATTTTTGGCCCAAAATGTCCCAAATTTCAACTTGCAGGTAGTATCCGAGAAAGCGGGTGGAATCGTTGTTGACGAGTTGAAAAAGCTCACTCTTCCATATGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAATTTGGCTTGAAAATG</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAGTCAGAATTTGGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTTTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTCAATTTGGCTTGAAAATGGTCAATTTTGACTCAAAAATGATCAATTTTAGCTCAAAAATGATCAATTTTTGCTTAGAAGTGCTGAATTTTAGCTCAAAAATGACGAATTTATCTTGAAAAGTCAATTATGGCTCAAAAATGATGATTTWTCGCTTGAAAATGATGAATTTTGGCTTTAAAATAGCGAATTTCGGCTCAAAATTCTCTTTTTTTTTCAGATCAAAAATACCCAAATTCTGACTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36546</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>52185</contig_pos>
        <strand></strand>
        <context>aaaataggct[G/T]aaaattgATC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACATGGTTGAAATTCGTTAAAAATAGGCTAAATTTGGTCGAAAATAGGCT</left_flank>
        <right_flank>AAAATTGATCCAAATCTATCGGAAAATCACAATTTTCGATTTTCAGGGAC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTGAAAATGAGCTGAAAATAAGCAAAAAATTGTCTAGAAACCCCTTAAAAAGCTTGAAAAAGCTTGAAAATTCACTCGAAAACGTTCAAAAACGCCTTGGGAACCCCTAGAAACCCTGAAAATCGAAATTTCGCACATTTTATAAAAAAATGCACACTTGGCTCAGTGGTTCCTGGATTTACCAATCTGACGATCCGGGTTCGAGTCCGCCCGGTGATAAATTTATTGAAAATCGTTTTAGACCGTTTTCATGGTGTTTGGAGCATTTCAGACGCTTGAAAATGCCTGAAATCGTCCAACAAAGCTGCAATTGAGGCTAAATTGGCTTAAATAACGTTTTTAGTGTTCAAAATAAGCCTAAAATTGTTAGAAAATGAGCTGGAAAAGGCTGAAAATCGTCCAAATTGGCTGAAAAAATCATTAAAATGACCTGAAACTAGTCTGAAGACATGGTTGAAATTCGTTAAAAATAGGCTAAATTTGGTCGAAAATAGGCTGAAAATTGATCCAAATCTATCGGAAAATCACAATTTTCGATTTTCAGGGACCAACTCCCTCAACGTACCGCCCATCCAATGATTCTATGTGCTCCAATGGCTCTTCCACTAACTATCCGATCGGAAATACCCGTTGATAAGCTGGAGCTAGAACCGGGCGGTGTAACGGACCTAATTATGGATTTATTGCAGAAAAAGAAGGATATGACTATTTGGGTAAGACTGGAAATTTGCTGGAAATGGCTGAAAATGCTGAAAATCGGGCTAAAACGGTCCAAAATTAGCGTAAAATGGCTGGAAATAGGCTGAAAATTTGAAAATCTGGTCGAAAATCGACTAAAAATATGCTGAGAAATGAAAAAATTGGCTTAAAATTGGCTGAAAACGGTTAAATTTAAAAAAAAATCGGCTGGAAAAATCTGAGAATATGCTAAAATTCGGCTGAAAATGGCTCAAACTTGAAAAATCTGGTCAAAAATCGACTAAAAATATGCTGAAAAA</canonical>
            <polymorphic>GACTGAAAATGAGCTGAAAATAAGCAAAAAATTGTCTAGAAACCCCTTAAAAAGCTTGAAAAAGCTTGAAAATTCACTCGAAAACGTTCAAAAACGCCTTGGGAACCCCTAGAAACCCTGAAAATCGAAATTTCGCACATTTTATAAAAAAATGCACACTTGGCTCAGTGGTTCCTGGATTTACCAATCTGACGATCCGGGTTCGAGTCCGCCCGGTGATAAATTTATTGAAAATCGTTTTAGACCGTTTTCATGGTGTTTGGAGCATTTCAGACGCTTGAAAATGCCTGAAATCGTCCAACAAAGCTGCAATTGAGGCTAAATTGGCTTAAATAACGTTTTTAGTGTTCAAAATAAGCCTAAAATTGTTAGAAAATGAGCTGGAAAAGGCTGAAAATCGTCCAAATTGGCTGAAAAAATCATTAAAATGACCTGAAACTAGTCTGAAGACATGGTTGAAATTCGTTAAAAATAGGCTAAATTTGGTCGAAAATAGGCTKAAAATTGATCCAAATCTATCGGAAAATCACAATTTTCGATTTTCAGGGACCAACTCCCTCAACGTACCGCCCATCCAATGATTCTATGTGCTCCAATGGCTCTTCCACTAACTATCCGATCGGAAATACCCGTTGATAAGCTGGAGCTAGAACCGGGCGGTGTAACGGACCTAATTATGGATTTATTGCAGAAAAAGAAGGATATGACTATTTGGGTAAGACTGGAAATTTGCTGGAAATGGCTGAAAATGCTGAAAATCGGGCTAAAACGGTCCAAAATTAGCGTAAAATGGCTGGAAATAGGCTGAAAATTTGAAAATCTGGTCGAAAATCGACTAAAAATATGCTGAGAAATGAAAAAATTGGCTTAAAATTGGCTGAAAACGGTTAAATTTAAAAAAAAATCGGCTGGAAAAATCTGAGAATATGCTAAAATTCGGCTGAAAATGGCTCAAACTTGAAAAATCTGGTCAAAAATCGACTAAAAATATGCTGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCCCTTAAAAAGCTTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGGAGCACATAGAATCATTG</pcr_primer_p2>
		<pcr_amplicon_size>555</pcr_amplicon_size>
		<canonical_amplicon>ACCCCTTAAAAAGCTTGAAAAAGCTTGAAAATTCACTCGAAAACGTTCAAAAACGCCTTGGGAACCCCTAGAAACCCTGAAAATCGAAATTTCGCACATTTTATAAAAAAATGCACACTTGGCTCAGTGGTTCCTGGATTTACCAATCTGACGATCCGGGTTCGAGTCCGCCCGGTGATAAATTTATTGAAAATCGTTTTAGACCGTTTTCATGGTGTTTGGAGCATTTCAGACGCTTGAAAATGCCTGAAATCGTCCAACAAAGCTGCAATTGAGGCTAAATTGGCTTAAATAACGTTTTTAGTGTTCAAAATAAGCCTAAAATTGTTAGAAAATGAGCTGGAAAAGGCTGAAAATCGTCCAAATTGGCTGAAAAAATCATTAAAATGACCTGAAACTAGTCTGAAGACATGGTTGAAATTCGTTAAAAATAGGCTAAATTTGGTCGAAAATAGGCTGAAAATTGATCCAAATCTATCGGAAAATCACAATTTTCGATTTTCAGGGACCAACTCCCTCAACGTACCGCCCATCCAATGATTCTATGTGCTCCAA</canonical_amplicon>
		<polymorphic_amplicon>ACCCCTTAAAAAGCTTGAAAAAGCTTGAAAATTCACTCGAAAACGTTCAAAAACGCCTTGGGAACCCCTAGAAACCCTGAAAATCGAAATTTCGCACATTTTATAAAAAAATGCACACTTGGCTCAGTGGTTCCTGGATTTACCAATCTGACGATCCGGGTTCGAGTCCGCCCGGTGATAAATTTATTGAAAATCGTTTTAGACCGTTTTCATGGTGTTTGGAGCATTTCAGACGCTTGAAAATGCCTGAAATCGTCCAACAAAGCTGCAATTGAGGCTAAATTGGCTTAAATAACGTTTTTAGTGTTCAAAATAAGCCTAAAATTGTTAGAAAATGAGCTGGAAAAGGCTGAAAATCGTCCAAATTGGCTGAAAAAATCATTAAAATGACCTGAAACTAGTCTGAAGACATGGTTGAAATTCGTTAAAAATAGGCTAAATTTGGTCGAAAATAGGCTKAAAATTGATCCAAATCTATCGGAAAATCACAATTTTCGATTTTCAGGGACCAACTCCCTCAACGTACCGCCCATCCAATGATTCTATGTGCTCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36547</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>52435</contig_pos>
        <strand></strand>
        <context>tggctgaaaa[T/A]gctraaaatc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GGATATGACTATTTGGGTAAGACTGGAAATTTGCTGGAAATGGCTGAAAA</left_flank>
        <right_flank>GCTGAAAATCGGGCTAAAACGGTCCAAAATTAGCGTAAAATGGCTGGAAA</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATGGTGTTTGGAGCATTTCAGACGCTTGAAAATGCCTGAAATCGTCCAACAAAGCTGCAATTGAGGCTAAATTGGCTTAAATAACGTTTTTAGTGTTCAAAATAAGCCTAAAATTGTTAGAAAATGAGCTGGAAAAGGCTGAAAATCGTCCAAATTGGCTGAAAAAATCATTAAAATGACCTGAAACTAGTCTGAAGACATGGTTGAAATTCGTTAAAAATAGGCTAAATTTGGTCGAAAATAGGCTGAAAATTGATCCAAATCTATCGGAAAATCACAATTTTCGATTTTCAGGGACCAACTCCCTCAACGTACCGCCCATCCAATGATTCTATGTGCTCCAATGGCTCTTCCACTAACTATCCGATCGGAAATACCCGTTGATAAGCTGGAGCTAGAACCGGGCGGTGTAACGGACCTAATTATGGATTTATTGCAGAAAAAGAAGGATATGACTATTTGGGTAAGACTGGAAATTTGCTGGAAATGGCTGAAAATGCTGAAAATCGGGCTAAAACGGTCCAAAATTAGCGTAAAATGGCTGGAAATAGGCTGAAAATTTGAAAATCTGGTCGAAAATCGACTAAAAATATGCTGAGAAATGAAAAAATTGGCTTAAAATTGGCTGAAAACGGTTAAATTTAAAAAAAAATCGGCTGGAAAAATCTGAGAATATGCTAAAATTCGGCTGAAAATGGCTCAAACTTGAAAAATCTGGTCAAAAATCGACTAAAAATATGCTGAAAAATGACTGAAAAATGACTGAAAATCAGCTGAAATTGCAGCCAAATTGTCTGAAAATGGCTGAAAATCAACTGAAAATGTTCAGAAATTGGAGAAAAATGGCTGAAAATGAGCTCAAATTCGCCTAAAAACCGAGAAATTCTGTATGTTTTGAATGAATTTGACGACAAAATCATCATTTTTGGACCATTTTTTTTTCAATTTTTCTCATTTTTTGCTACCTACAGTAACCCAATTTTCCTTCTTGCAGACCT</canonical>
            <polymorphic>TCATGGTGTTTGGAGCATTTCAGACGCTTGAAAATGCCTGAAATCGTCCAACAAAGCTGCAATTGAGGCTAAATTGGCTTAAATAACGTTTTTAGTGTTCAAAATAAGCCTAAAATTGTTAGAAAATGAGCTGGAAAAGGCTGAAAATCGTCCAAATTGGCTGAAAAAATCATTAAAATGACCTGAAACTAGTCTGAAGACATGGTTGAAATTCGTTAAAAATAGGCTAAATTTGGTCGAAAATAGGCTGAAAATTGATCCAAATCTATCGGAAAATCACAATTTTCGATTTTCAGGGACCAACTCCCTCAACGTACCGCCCATCCAATGATTCTATGTGCTCCAATGGCTCTTCCACTAACTATCCGATCGGAAATACCCGTTGATAAGCTGGAGCTAGAACCGGGCGGTGTAACGGACCTAATTATGGATTTATTGCAGAAAAAGAAGGATATGACTATTTGGGTAAGACTGGAAATTTGCTGGAAATGGCTGAAAAWGCTGAAAATCGGGCTAAAACGGTCCAAAATTAGCGTAAAATGGCTGGAAATAGGCTGAAAATTTGAAAATCTGGTCGAAAATCGACTAAAAATATGCTGAGAAATGAAAAAATTGGCTTAAAATTGGCTGAAAACGGTTAAATTTAAAAAAAAATCGGCTGGAAAAATCTGAGAATATGCTAAAATTCGGCTGAAAATGGCTCAAACTTGAAAAATCTGGTCAAAAATCGACTAAAAATATGCTGAAAAATGACTGAAAAATGACTGAAAATCAGCTGAAATTGCAGCCAAATTGTCTGAAAATGGCTGAAAATCAACTGAAAATGTTCAGAAATTGGAGAAAAATGGCTGAAAATGAGCTCAAATTCGCCTAAAAACCGAGAAATTCTGTATGTTTTGAATGAATTTGACGACAAAATCATCATTTTTGGACCATTTTTTTTTCAATTTTTCTCATTTTTTGCTACCTACAGTAACCCAATTTTCCTTCTTGCAGACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGGATATGACTATTTGGGTAAG</pcr_primer_p1>
		<pcr_primer_p2>CAAATTCATTCAAAACATACAGA</pcr_primer_p2>
		<pcr_amplicon_size>463</pcr_amplicon_size>
		<canonical_amplicon>GAAGGATATGACTATTTGGGTAAGACTGGAAATTTGCTGGAAATGGCTGAAAATGCTGAAAATCGGGCTAAAACGGTCCAAAATTAGCGTAAAATGGCTGGAAATAGGCTGAAAATTTGAAAATCTGGTCGAAAATCGACTAAAAATATGCTGAGAAATGAAAAAATTGGCTTAAAATTGGCTGAAAACGGTTAAATTTAAAAAAAAATCGGCTGGAAAAATCTGAGAATATGCTAAAATTCGGCTGAAAATGGCTCAAACTTGAAAAATCTGGTCAAAAATCGACTAAAAATATGCTGAAAAATGACTGAAAAATGACTGAAAATCAGCTGAAATTGCAGCCAAATTGTCTGAAAATGGCTGAAAATCAACTGAAAATGTTCAGAAATTGGAGAAAAATGGCTGAAAATGAGCTCAAATTCGCCTAAAAACCGAGAAATTCTGTATGTTTTGAATGAATTTG</canonical_amplicon>
		<polymorphic_amplicon>GAAGGATATGACTATTTGGGTAAGACTGGAAATTTGCTGGAAATGGCTGAAAAWGCTGAAAATCGGGCTAAAACGGTCCAAAATTAGCGTAAAATGGCTGGAAATAGGCTGAAAATTTGAAAATCTGGTCGAAAATCGACTAAAAATATGCTGAGAAATGAAAAAATTGGCTTAAAATTGGCTGAAAACGGTTAAATTTAAAAAAAAATCGGCTGGAAAAATCTGAGAATATGCTAAAATTCGGCTGAAAATGGCTCAAACTTGAAAAATCTGGTCAAAAATCGACTAAAAATATGCTGAAAAATGACTGAAAAATGACTGAAAATCAGCTGAAATTGCAGCCAAATTGTCTGAAAATGGCTGAAAATCAACTGAAAATGTTCAGAAATTGGAGAAAAATGGCTGAAAATGAGCTCAAATTCGCCTAAAAACCGAGAAATTCTGTATGTTTTGAATGAATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36548</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>52439</contig_pos>
        <strand></strand>
        <context>tgaaaawgct[G/A]aaaatcgggc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATGACTATTTGGGTAAGACTGGAAATTTGCTGGAAATGGCTGAAAATGCT</left_flank>
        <right_flank>AAAATCGGGCTAAAACGGTCCAAAATTAGCGTAAAATGGCTGGAAATAGG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGTTTGGAGCATTTCAGACGCTTGAAAATGCCTGAAATCGTCCAACAAAGCTGCAATTGAGGCTAAATTGGCTTAAATAACGTTTTTAGTGTTCAAAATAAGCCTAAAATTGTTAGAAAATGAGCTGGAAAAGGCTGAAAATCGTCCAAATTGGCTGAAAAAATCATTAAAATGACCTGAAACTAGTCTGAAGACATGGTTGAAATTCGTTAAAAATAGGCTAAATTTGGTCGAAAATAGGCTGAAAATTGATCCAAATCTATCGGAAAATCACAATTTTCGATTTTCAGGGACCAACTCCCTCAACGTACCGCCCATCCAATGATTCTATGTGCTCCAATGGCTCTTCCACTAACTATCCGATCGGAAATACCCGTTGATAAGCTGGAGCTAGAACCGGGCGGTGTAACGGACCTAATTATGGATTTATTGCAGAAAAAGAAGGATATGACTATTTGGGTAAGACTGGAAATTTGCTGGAAATGGCTGAAAATGCTGAAAATCGGGCTAAAACGGTCCAAAATTAGCGTAAAATGGCTGGAAATAGGCTGAAAATTTGAAAATCTGGTCGAAAATCGACTAAAAATATGCTGAGAAATGAAAAAATTGGCTTAAAATTGGCTGAAAACGGTTAAATTTAAAAAAAAATCGGCTGGAAAAATCTGAGAATATGCTAAAATTCGGCTGAAAATGGCTCAAACTTGAAAAATCTGGTCAAAAATCGACTAAAAATATGCTGAAAAATGACTGAAAAATGACTGAAAATCAGCTGAAATTGCAGCCAAATTGTCTGAAAATGGCTGAAAATCAACTGAAAATGTTCAGAAATTGGAGAAAAATGGCTGAAAATGAGCTCAAATTCGCCTAAAAACCGAGAAATTCTGTATGTTTTGAATGAATTTGACGACAAAATCATCATTTTTGGACCATTTTTTTTTCAATTTTTCTCATTTTTTGCTACCTACAGTAACCCAATTTTCCTTCTTGCAGACCTTCAT</canonical>
            <polymorphic>GGTGTTTGGAGCATTTCAGACGCTTGAAAATGCCTGAAATCGTCCAACAAAGCTGCAATTGAGGCTAAATTGGCTTAAATAACGTTTTTAGTGTTCAAAATAAGCCTAAAATTGTTAGAAAATGAGCTGGAAAAGGCTGAAAATCGTCCAAATTGGCTGAAAAAATCATTAAAATGACCTGAAACTAGTCTGAAGACATGGTTGAAATTCGTTAAAAATAGGCTAAATTTGGTCGAAAATAGGCTGAAAATTGATCCAAATCTATCGGAAAATCACAATTTTCGATTTTCAGGGACCAACTCCCTCAACGTACCGCCCATCCAATGATTCTATGTGCTCCAATGGCTCTTCCACTAACTATCCGATCGGAAATACCCGTTGATAAGCTGGAGCTAGAACCGGGCGGTGTAACGGACCTAATTATGGATTTATTGCAGAAAAAGAAGGATATGACTATTTGGGTAAGACTGGAAATTTGCTGGAAATGGCTGAAAATGCTRAAAATCGGGCTAAAACGGTCCAAAATTAGCGTAAAATGGCTGGAAATAGGCTGAAAATTTGAAAATCTGGTCGAAAATCGACTAAAAATATGCTGAGAAATGAAAAAATTGGCTTAAAATTGGCTGAAAACGGTTAAATTTAAAAAAAAATCGGCTGGAAAAATCTGAGAATATGCTAAAATTCGGCTGAAAATGGCTCAAACTTGAAAAATCTGGTCAAAAATCGACTAAAAATATGCTGAAAAATGACTGAAAAATGACTGAAAATCAGCTGAAATTGCAGCCAAATTGTCTGAAAATGGCTGAAAATCAACTGAAAATGTTCAGAAATTGGAGAAAAATGGCTGAAAATGAGCTCAAATTCGCCTAAAAACCGAGAAATTCTGTATGTTTTGAATGAATTTGACGACAAAATCATCATTTTTGGACCATTTTTTTTTCAATTTTTCTCATTTTTTGCTACCTACAGTAACCCAATTTTCCTTCTTGCAGACCTTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATATGACTATTTGGGTAAGACT</pcr_primer_p1>
		<pcr_primer_p2>CAAATTCATTCAAAACATACAGA</pcr_primer_p2>
		<pcr_amplicon_size>460</pcr_amplicon_size>
		<canonical_amplicon>GGATATGACTATTTGGGTAAGACTGGAAATTTGCTGGAAATGGCTGAAAATGCTGAAAATCGGGCTAAAACGGTCCAAAATTAGCGTAAAATGGCTGGAAATAGGCTGAAAATTTGAAAATCTGGTCGAAAATCGACTAAAAATATGCTGAGAAATGAAAAAATTGGCTTAAAATTGGCTGAAAACGGTTAAATTTAAAAAAAAATCGGCTGGAAAAATCTGAGAATATGCTAAAATTCGGCTGAAAATGGCTCAAACTTGAAAAATCTGGTCAAAAATCGACTAAAAATATGCTGAAAAATGACTGAAAAATGACTGAAAATCAGCTGAAATTGCAGCCAAATTGTCTGAAAATGGCTGAAAATCAACTGAAAATGTTCAGAAATTGGAGAAAAATGGCTGAAAATGAGCTCAAATTCGCCTAAAAACCGAGAAATTCTGTATGTTTTGAATGAATTTG</canonical_amplicon>
		<polymorphic_amplicon>GGATATGACTATTTGGGTAAGACTGGAAATTTGCTGGAAATGGCTGAAAATGCTRAAAATCGGGCTAAAACGGTCCAAAATTAGCGTAAAATGGCTGGAAATAGGCTGAAAATTTGAAAATCTGGTCGAAAATCGACTAAAAATATGCTGAGAAATGAAAAAATTGGCTTAAAATTGGCTGAAAACGGTTAAATTTAAAAAAAAATCGGCTGGAAAAATCTGAGAATATGCTAAAATTCGGCTGAAAATGGCTCAAACTTGAAAAATCTGGTCAAAAATCGACTAAAAATATGCTGAAAAATGACTGAAAAATGACTGAAAATCAGCTGAAATTGCAGCCAAATTGTCTGAAAATGGCTGAAAATCAACTGAAAATGTTCAGAAATTGGAGAAAAATGGCTGAAAATGAGCTCAAATTCGCCTAAAAACCGAGAAATTCTGTATGTTTTGAATGAATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36549</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>52751</contig_pos>
        <strand></strand>
        <context>gctgaaaatc[A/G]actgaaaatg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAAATCAGCTGAAATTGCAGCCAAATTGTCTGAAAATGGCTGAAAATC</left_flank>
        <right_flank>ACTGAAAATGTTCAGAAATTGGAGAAAAATGGCTGAAAATGAGCTCAAAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGCCCATCCAATGATTCTATGTGCTCCAATGGCTCTTCCACTAACTATCCGATCGGAAATACCCGTTGATAAGCTGGAGCTAGAACCGGGCGGTGTAACGGACCTAATTATGGATTTATTGCAGAAAAAGAAGGATATGACTATTTGGGTAAGACTGGAAATTTGCTGGAAATGGCTGAAAATGCTGAAAATCGGGCTAAAACGGTCCAAAATTAGCGTAAAATGGCTGGAAATAGGCTGAAAATTTGAAAATCTGGTCGAAAATCGACTAAAAATATGCTGAGAAATGAAAAAATTGGCTTAAAATTGGCTGAAAACGGTTAAATTTAAAAAAAAATCGGCTGGAAAAATCTGAGAATATGCTAAAATTCGGCTGAAAATGGCTCAAACTTGAAAAATCTGGTCAAAAATCGACTAAAAATATGCTGAAAAATGACTGAAAAATGACTGAAAATCAGCTGAAATTGCAGCCAAATTGTCTGAAAATGGCTGAAAATCAACTGAAAATGTTCAGAAATTGGAGAAAAATGGCTGAAAATGAGCTCAAATTCGCCTAAAAACCGAGAAATTCTGTATGTTTTGAATGAATTTGACGACAAAATCATCATTTTTGGACCATTTTTTTTTCAATTTTTCTCATTTTTTGCTACCTACAGTAACCCAATTTTCCTTCTTGCAGACCTTCATTGAAGGCTCGTCAAATGGTCCAACTGCTCCATTCGGGTGTCTAAGAATGAATACATTTGGTACTGGAGTCACTCTGATTCTCCTCCCATTAATCCTAAACTGATCCGAAATTAGCCTAAAATGGCTTAAAAATAGCTTAAAATCGTCCAAGATGAGCTCAAAATTAGCCCTAAAATAGCTCAAAATGTGTCTTGCTGAATTTTGGACGAGAATTGAGCTGAAAATGCCTAAAAATGACTGAAATTTGACCAGAATAGCCCCAAAATTGGCCGAAAATCAACTAAAAATGATCGAAATTTGAGTGAAAAATGC</canonical>
            <polymorphic>CCGCCCATCCAATGATTCTATGTGCTCCAATGGCTCTTCCACTAACTATCCGATCGGAAATACCCGTTGATAAGCTGGAGCTAGAACCGGGCGGTGTAACGGACCTAATTATGGATTTATTGCAGAAAAAGAAGGATATGACTATTTGGGTAAGACTGGAAATTTGCTGGAAATGGCTGAAAATGCTGAAAATCGGGCTAAAACGGTCCAAAATTAGCGTAAAATGGCTGGAAATAGGCTGAAAATTTGAAAATCTGGTCGAAAATCGACTAAAAATATGCTGAGAAATGAAAAAATTGGCTTAAAATTGGCTGAAAACGGTTAAATTTAAAAAAAAATCGGCTGGAAAAATCTGAGAATATGCTAAAATTCGGCTGAAAATGGCTCAAACTTGAAAAATCTGGTCAAAAATCGACTAAAAATATGCTGAAAAATGACTGAAAAATGACTGAAAATCAGCTGAAATTGCAGCCAAATTGTCTGAAAATGGCTGAAAATCRACTGAAAATGTTCAGAAATTGGAGAAAAATGGCTGAAAATGAGCTCAAATTCGCCTAAAAACCGAGAAATTCTGTATGTTTTGAATGAATTTGACGACAAAATCATCATTTTTGGACCATTTTTTTTTCAATTTTTCTCATTTTTTGCTACCTACAGTAACCCAATTTTCCTTCTTGCAGACCTTCATTGAAGGCTCGTCAAATGGTCCAACTGCTCCATTCGGGTGTCTAAGAATGAATACATTTGGTACTGGAGTCACTCTGATTCTCCTCCCATTAATCCTAAACTGATCCGAAATTAGCCTAAAATGGCTTAAAAATAGCTTAAAATCGTCCAAGATGAGCTCAAAATTAGCCCTAAAATAGCTCAAAATGTGTCTTGCTGAATTTTGGACGAGAATTGAGCTGAAAATGCCTAAAAATGACTGAAATTTGACCAGAATAGCCCCAAAATTGGCCGAAAATCAACTAAAAATGATCGAAATTTGAGTGAAAAATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTATTTGGGTAAGACTGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CAAATTCATTCAAAACATACAGA</pcr_primer_p2>
		<pcr_amplicon_size>453</pcr_amplicon_size>
		<canonical_amplicon>ACTATTTGGGTAAGACTGGAAATTTGCTGGAAATGGCTGAAAATGCTGAAAATCGGGCTAAAACGGTCCAAAATTAGCGTAAAATGGCTGGAAATAGGCTGAAAATTTGAAAATCTGGTCGAAAATCGACTAAAAATATGCTGAGAAATGAAAAAATTGGCTTAAAATTGGCTGAAAACGGTTAAATTTAAAAAAAAATCGGCTGGAAAAATCTGAGAATATGCTAAAATTCGGCTGAAAATGGCTCAAACTTGAAAAATCTGGTCAAAAATCGACTAAAAATATGCTGAAAAATGACTGAAAAATGACTGAAAATCAGCTGAAATTGCAGCCAAATTGTCTGAAAATGGCTGAAAATCAACTGAAAATGTTCAGAAATTGGAGAAAAATGGCTGAAAATGAGCTCAAATTCGCCTAAAAACCGAGAAATTCTGTATGTTTTGAATGAATTTG</canonical_amplicon>
		<polymorphic_amplicon>ACTATTTGGGTAAGACTGGAAATTTGCTGGAAATGGCTGAAAATGCTGAAAATCGGGCTAAAACGGTCCAAAATTAGCGTAAAATGGCTGGAAATAGGCTGAAAATTTGAAAATCTGGTCGAAAATCGACTAAAAATATGCTGAGAAATGAAAAAATTGGCTTAAAATTGGCTGAAAACGGTTAAATTTAAAAAAAAATCGGCTGGAAAAATCTGAGAATATGCTAAAATTCGGCTGAAAATGGCTCAAACTTGAAAAATCTGGTCAAAAATCGACTAAAAATATGCTGAAAAATGACTGAAAAATGACTGAAAATCAGCTGAAATTGCAGCCAAATTGTCTGAAAATGGCTGAAAATCRACTGAAAATGTTCAGAAATTGGAGAAAAATGGCTGAAAATGAGCTCAAATTCGCCTAAAAACCGAGAAATTCTGTATGTTTTGAATGAATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36550</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>54516</contig_pos>
        <strand>+</strand>
        <context>TGATGAATTT[C/T]GGCTCAAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGAATTTCGGCTTAAAAATGACGAATTTTAGCTTTAAAATGATGAATTT</left_flank>
        <right_flank>GGCTCAAAACTCTCATTTTTTCGATTTTTCAAATCAAAAATACCCAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGTTTGGAGATCCAAATTGGACTCGTACTTTCAGACCGTTCCTTATTATTATTTTACAGTAAGTTTGTGGCTGAAAATGACCCATTTTTGGAGCAAAAAATCAGCAAACTTCCAAAAATAGCACTAAAAATGACCGAAAATTGGGTCCAAATCACCCAAAAATGATACTTTTTTCCCAGAAAATTGTAGACCAGAAAACTCAAAAAAAACCGGCTGAAAATGATTGATTTTGACTAAAATACATGAAAATTCAACAATTCGGAAGCCCTTTAAAAATCCTAAAAATCTGAAATTTTGATTCTAAAAAACACCCAAAAAAGTTGTCAAAAATTTGAGATTTTTGCTTTAAAAACACTCTAAAAATCATTAAAATTTCAGATTTTTTGCTCCAAAAACCCCAAAAATAAAGCTCAAAATGTACAAATATTCAATTTCACCTCAAAAATCGTGAATTTCGGCTTAAAAATGACGAATTTTAGCTTTAAAATGATGAATTTTGGCTCAAAACTCTCATTTTTTCGATTTTTCAAATCAAAAATACCCAAATTTTGACTGAAAAATCGGTCATTTTCACTCAAAAATTGTCAATTTTTGCTCAAAAATGACGAATTGTGGCTCAAAAACGATTGATTTTCGCCCAAAAGTGTCAATTTTGGCGTAAAAATGATGAATTTCGACTCGAAAATGGTCAATTTTGGCTCGAAAAATGTCTATTTTGGCTCGAAAATGATGAATTTTAGCTCAAAAATAGTCAATTTTGGCTTTAAATGGTCCATTTTGACTCAAAAATGGCGAATTTCAGCTTAAAAATGACGAATTTTAGCTTAAAATTTTCCGAAAAAAAACCCAATAAATGGTCAATTTTGGTTTCGAAAAAAAAAAGAAAAAAAATCACATAAAATTTTTGGCTCCAAAACTTTTGGATTTTTGGACCAAAAACACCCCAATATAATACAATTTTGGATGAAAAATGACCCCCATTTTTCACTGAATAATCA</canonical>
            <polymorphic>CAAGTTTGGAGATCCAAATTGGACTCGTACTTTCAGACCGTTCCTTATTATTATTTTACAGTAAGTTTGTGGCTGAAAATGACCCATTTTTGGAGCAAAAAATCAGCAAACTTCCAAAAATAGCACTAAAAATGACCGAAAATTGGGTCCAAATCACCCAAAAATGATACTTTTTTCCCAGAAAATTGTAGACCAGAAAACTCAAAAAAAACCGGCTGAAAATGATTGATTTTGACTAAAATACATGAAAATTCAACAATTCGGAAGCCCTTTAAAAATCCTAAAAATCTGAAATTTTGATTCTAAAAAACACCCAAAAAAGTTGTCAAAAATTTGAGATTTTTGCTTTAAAAACACTCTAAAAATCATTAAAATTTCAGATTTTTTGCTCCAAAAACCCCAAAAATAAAGCTCAAAATGTACAAATATTCAATTTCACCTCAAAAATCGTGAATTTCGGCTTAAAAATGACGAATTTTAGCTTTAAAATGATGAATTTYGGCTCAAAACTCTCATTTTTTCGATTTTTCAAATCAAAAATACCCAAATTTTGACTGAAAAATCGGTCATTTTCACTCAAAAATTGTCAATTTTTGCTCAAAAATGACGAATTGTGGCTCAAAAACGATTGATTTTCGCCCAAAAGTGTCAATTTTGGCGTAAAAATGATGAATTTCGACTCGAAAATGGTCAATTTTGGCTCGAAAAATGTCTATTTTGGCTCGAAAATGATGAATTTTAGCTCAAAAATAGTCAATTTTGGCTTTAAATGGTCCATTTTGACTCAAAAATGGCGAATTTCAGCTTAAAAATGACGAATTTTAGCTTAAAATTTTCCGAAAAAAAACCCAATAAATGGTCAATTTTGGTTTCGAAAAAAAAAAGAAAAAAAATCACATAAAATTTTTGGCTCCAAAACTTTTGGATTTTTGGACCAAAAACACCCCAATATAATACAATTTTGGATGAAAAATGACCCCCATTTTTCACTGAATAATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGCTTTAAAAACACTCTAAA</pcr_primer_p1>
		<pcr_primer_p2>GACAATTTTTGAGTGAAAATGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGCTTTAAAAACACTCTAAAAATCATTAAAATTTCAGATTTTTTGCTCCAAAAACCCCAAAAATAAAGCTCAAAATGTACAAATATTCAATTTCACCTCAAAAATCGTGAATTTCGGCTTAAAAATGACGAATTTTAGCTTTAAAATGATGAATTTTGGCTCAAAACTCTCATTTTTTCGATTTTTCAAATCAAAAATACCCAAATTTTGACTGAAAAATCGGTCATTTTCACTCAAAAATTGTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGCTTTAAAAACACTCTAAAAATCATTAAAATTTCAGATTTTTTGCTCCAAAAACCCCAAAAATAAAGCTCAAAATGTACAAATATTCAATTTCACCTCAAAAATCGTGAATTTCGGCTTAAAAATGACGAATTTTAGCTTTAAAATGATGAATTTYGGCTCAAAACTCTCATTTTTTCGATTTTTCAAATCAAAAATACCCAAATTTTGACTGAAAAATCGGTCATTTTCACTCAAAAATTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36551</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>54530</contig_pos>
        <strand>+</strand>
        <context>TCAAAACTCT[C/T]ATTTTTTCGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATGACGAATTTTAGCTTTAAAATGATGAATTTTGGCTCAAAACTCT</left_flank>
        <right_flank>ATTTTTTCGATTTTTCAAATCAAAAATACCCAAATTTTGACTGAAAAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATTGGACTCGTACTTTCAGACCGTTCCTTATTATTATTTTACAGTAAGTTTGTGGCTGAAAATGACCCATTTTTGGAGCAAAAAATCAGCAAACTTCCAAAAATAGCACTAAAAATGACCGAAAATTGGGTCCAAATCACCCAAAAATGATACTTTTTTCCCAGAAAATTGTAGACCAGAAAACTCAAAAAAAACCGGCTGAAAATGATTGATTTTGACTAAAATACATGAAAATTCAACAATTCGGAAGCCCTTTAAAAATCCTAAAAATCTGAAATTTTGATTCTAAAAAACACCCAAAAAAGTTGTCAAAAATTTGAGATTTTTGCTTTAAAAACACTCTAAAAATCATTAAAATTTCAGATTTTTTGCTCCAAAAACCCCAAAAATAAAGCTCAAAATGTACAAATATTCAATTTCACCTCAAAAATCGTGAATTTCGGCTTAAAAATGACGAATTTTAGCTTTAAAATGATGAATTTTGGCTCAAAACTCTCATTTTTTCGATTTTTCAAATCAAAAATACCCAAATTTTGACTGAAAAATCGGTCATTTTCACTCAAAAATTGTCAATTTTTGCTCAAAAATGACGAATTGTGGCTCAAAAACGATTGATTTTCGCCCAAAAGTGTCAATTTTGGCGTAAAAATGATGAATTTCGACTCGAAAATGGTCAATTTTGGCTCGAAAAATGTCTATTTTGGCTCGAAAATGATGAATTTTAGCTCAAAAATAGTCAATTTTGGCTTTAAATGGTCCATTTTGACTCAAAAATGGCGAATTTCAGCTTAAAAATGACGAATTTTAGCTTAAAATTTTCCGAAAAAAAACCCAATAAATGGTCAATTTTGGTTTCGAAAAAAAAAAGAAAAAAAATCACATAAAATTTTTGGCTCCAAAACTTTTGGATTTTTGGACCAAAAACACCCCAATATAATACAATTTTGGATGAAAAATGACCCCCATTTTTCACTGAATAATCATTGAAAAAGCTCAA</canonical>
            <polymorphic>CAAATTGGACTCGTACTTTCAGACCGTTCCTTATTATTATTTTACAGTAAGTTTGTGGCTGAAAATGACCCATTTTTGGAGCAAAAAATCAGCAAACTTCCAAAAATAGCACTAAAAATGACCGAAAATTGGGTCCAAATCACCCAAAAATGATACTTTTTTCCCAGAAAATTGTAGACCAGAAAACTCAAAAAAAACCGGCTGAAAATGATTGATTTTGACTAAAATACATGAAAATTCAACAATTCGGAAGCCCTTTAAAAATCCTAAAAATCTGAAATTTTGATTCTAAAAAACACCCAAAAAAGTTGTCAAAAATTTGAGATTTTTGCTTTAAAAACACTCTAAAAATCATTAAAATTTCAGATTTTTTGCTCCAAAAACCCCAAAAATAAAGCTCAAAATGTACAAATATTCAATTTCACCTCAAAAATCGTGAATTTCGGCTTAAAAATGACGAATTTTAGCTTTAAAATGATGAATTTTGGCTCAAAACTCTYATTTTTTCGATTTTTCAAATCAAAAATACCCAAATTTTGACTGAAAAATCGGTCATTTTCACTCAAAAATTGTCAATTTTTGCTCAAAAATGACGAATTGTGGCTCAAAAACGATTGATTTTCGCCCAAAAGTGTCAATTTTGGCGTAAAAATGATGAATTTCGACTCGAAAATGGTCAATTTTGGCTCGAAAAATGTCTATTTTGGCTCGAAAATGATGAATTTTAGCTCAAAAATAGTCAATTTTGGCTTTAAATGGTCCATTTTGACTCAAAAATGGCGAATTTCAGCTTAAAAATGACGAATTTTAGCTTAAAATTTTCCGAAAAAAAACCCAATAAATGGTCAATTTTGGTTTCGAAAAAAAAAAGAAAAAAAATCACATAAAATTTTTGGCTCCAAAACTTTTGGATTTTTGGACCAAAAACACCCCAATATAATACAATTTTGGATGAAAAATGACCCCCATTTTTCACTGAATAATCATTGAAAAAGCTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGCTTTAAAAACACTCTAAA</pcr_primer_p1>
		<pcr_primer_p2>GACAATTTTTGAGTGAAAATGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGCTTTAAAAACACTCTAAAAATCATTAAAATTTCAGATTTTTTGCTCCAAAAACCCCAAAAATAAAGCTCAAAATGTACAAATATTCAATTTCACCTCAAAAATCGTGAATTTCGGCTTAAAAATGACGAATTTTAGCTTTAAAATGATGAATTTTGGCTCAAAACTCTCATTTTTTCGATTTTTCAAATCAAAAATACCCAAATTTTGACTGAAAAATCGGTCATTTTCACTCAAAAATTGTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGCTTTAAAAACACTCTAAAAATCATTAAAATTTCAGATTTTTTGCTCCAAAAACCCCAAAAATAAAGCTCAAAATGTACAAATATTCAATTTCACCTCAAAAATCGTGAATTTCGGCTTAAAAATGACGAATTTTAGCTTTAAAATGATGAATTTTGGCTCAAAACTCTYATTTTTTCGATTTTTCAAATCAAAAATACCCAAATTTTGACTGAAAAATCGGTCATTTTCACTCAAAAATTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36552</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>66607</contig_pos>
        <strand></strand>
        <context>ATTGTTTCAG[C/A]MAAAAAATGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GAAAAAGCGAATATCTAGATGTAAATCCAACGATTTCCGCATTGTTTCAG</left_flank>
        <right_flank>AAAAAAATGACCGAAATGGTACAAAAAATTGACGAAAATCTTGGATTTTG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGTTGACTCAGCAAAAAGTGAGTAAAATGGCTCAAATTAACCCAAAAATGTGGAAAATTTGCGTTAAATTGTCCTAGAATTACCTGAAAAACGCTTTGAATAACTCAAATTTCGTTTTAAATTGTCCAAAATTAGCCTACAATGGCTTCAAAATAGCTGAAATTCGCCAAAAAACCACACAAAATACCCAAATCTTTGTAGAAATCCATTTTGGTACTGCTCAGCAGTAGTAAAATCCATTGTGCTGCAGCTGGGCAGGTGCAAAATTCCCATTTTCTCCGGTTTTCAAAGTTTTCGCATCAAATTTGTTGCTTTTAAAGCCGGAAAACACAATTTTCGAATGGAAAATCCCATTTTTGAGCTCATTATCACTGAAAAATTTTATTTTCGACACAAAAAATCACCTCAAAAAAAATTTTTTTTTCGAATTTTCGATATTTTTTACACGAAAAAGCGAATATCTAGATGTAAATCCAACGATTTCCGCATTGTTTCAGCAAAAAAATGACCGAAATGGTACAAAAAATTGACGAAAATCTTGGATTTTGGTACTGCTAAGCAGGTGCAAAATGGAATTTTGGTACTGCCCGGCAGTGTCAAATTTACCATTTTTCTCCGATTTTCGAAGTGTTTGCATCAATTTTGTTGCTTTAAAAGCCGGAAAATACGATTTTTAATGGAAAATCTCAATTTTGAGGTTGTTATAACTGGAAAAGTTGATTTTCAATACAAAAATTCATCTAAAATCCATTTTTTTTTTCGGTAAAAAATGTGTTTTTCGAAATTTTTCGGTAGATTTTCGGGGTAAAATTATCCGAAATATCATGTTTTTAGATGAACAACAGAATTTCCAGTTAATTTTCAAGAAGAAACATCTGAAAATTCAAAGTTTCAAACAAAATTTTACAGCTCGATTTGCAGCTCGAAATGACCTCATTTTCACAGAAATGTTTCCAAAACGAATTAAAGACAAAAAATGACTGATTTATTCAGAAAAA</canonical>
            <polymorphic>GATGTTGACTCAGCAAAAAGTGAGTAAAATGGCTCAAATTAACCCAAAAATGTGGAAAATTTGCGTTAAATTGTCCTAGAATTACCTGAAAAACGCTTTGAATAACTCAAATTTCGTTTTAAATTGTCCAAAATTAGCCTACAATGGCTTCAAAATAGCTGAAATTCGCCAAAAAACCACACAAAATACCCAAATCTTTGTAGAAATCCATTTTGGTACTGCTCAGCAGTAGTAAAATCCATTGTGCTGCAGCTGGGCAGGTGCAAAATTCCCATTTTCTCCGGTTTTCAAAGTTTTCGCATCAAATTTGTTGCTTTTAAAGCCGGAAAACACAATTTTCGAATGGAAAATCCCATTTTTGAGCTCATTATCACTGAAAAATTTTATTTTCGACACAAAAAATCACCTCAAAAAAAATTTTTTTTTCGAATTTTCGATATTTTTTACACGAAAAAGCGAATATCTAGATGTAAATCCAACGATTTCCGCATTGTTTCAGMAAAAAAATGACCGAAATGGTACAAAAAATTGACGAAAATCTTGGATTTTGGTACTGCTAAGCAGGTGCAAAATGGAATTTTGGTACTGCCCGGCAGTGTCAAATTTACCATTTTTCTCCGATTTTCGAAGTGTTTGCATCAATTTTGTTGCTTTAAAAGCCGGAAAATACGATTTTTAATGGAAAATCTCAATTTTGAGGTTGTTATAACTGGAAAAGTTGATTTTCAATACAAAAATTCATCTAAAATCCATTTTTTTTTTCGGTAAAAAATGTGTTTTTCGAAATTTTTCGGTAGATTTTCGGGGTAAAATTATCCGAAATATCATGTTTTTAGATGAACAACAGAATTTCCAGTTAATTTTCAAGAAGAAACATCTGAAAATTCAAAGTTTCAAACAAAATTTTACAGCTCGATTTGCAGCTCGAAATGACCTCATTTTCACAGAAATGTTTCCAAAACGAATTAAAGACAAAAAATGACTGATTTATTCAGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACACGAAAAAGCGAATATCTA</pcr_primer_p1>
		<pcr_primer_p2>CAAAATTGAGATTTTCCATTAAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTACACGAAAAAGCGAATATCTAGATGTAAATCCAACGATTTCCGCATTGTTTCAGCAAAAAAATGACCGAAATGGTACAAAAAATTGACGAAAATCTTGGATTTTGGTACTGCTAAGCAGGTGCAAAATGGAATTTTGGTACTGCCCGGCAGTGTCAAATTTACCATTTTTCTCCGATTTTCGAAGTGTTTGCATCAATTTTGTTGCTTTAAAAGCCGGAAAATACGATTTTTAATGGAAAATCTCAATTTTG</canonical_amplicon>
		<polymorphic_amplicon>TTACACGAAAAAGCGAATATCTAGATGTAAATCCAACGATTTCCGCATTGTTTCAGMAAAAAAATGACCGAAATGGTACAAAAAATTGACGAAAATCTTGGATTTTGGTACTGCTAAGCAGGTGCAAAATGGAATTTTGGTACTGCCCGGCAGTGTCAAATTTACCATTTTTCTCCGATTTTCGAAGTGTTTGCATCAATTTTGTTGCTTTAAAAGCCGGAAAATACGATTTTTAATGGAAAATCTCAATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36553</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>66608</contig_pos>
        <strand></strand>
        <context>TTGTTTCAGM[A/C]AAAAAATGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAAAGCGAATATCTAGATGTAAATCCAACGATTTCCGCATTGTTTCAGC</left_flank>
        <right_flank>AAAAAATGACCGAAATGGTACAAAAAATTGACGAAAATCTTGGATTTTGG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTTGACTCAGCAAAAAGTGAGTAAAATGGCTCAAATTAACCCAAAAATGTGGAAAATTTGCGTTAAATTGTCCTAGAATTACCTGAAAAACGCTTTGAATAACTCAAATTTCGTTTTAAATTGTCCAAAATTAGCCTACAATGGCTTCAAAATAGCTGAAATTCGCCAAAAAACCACACAAAATACCCAAATCTTTGTAGAAATCCATTTTGGTACTGCTCAGCAGTAGTAAAATCCATTGTGCTGCAGCTGGGCAGGTGCAAAATTCCCATTTTCTCCGGTTTTCAAAGTTTTCGCATCAAATTTGTTGCTTTTAAAGCCGGAAAACACAATTTTCGAATGGAAAATCCCATTTTTGAGCTCATTATCACTGAAAAATTTTATTTTCGACACAAAAAATCACCTCAAAAAAAATTTTTTTTTCGAATTTTCGATATTTTTTACACGAAAAAGCGAATATCTAGATGTAAATCCAACGATTTCCGCATTGTTTCAGCAAAAAAATGACCGAAATGGTACAAAAAATTGACGAAAATCTTGGATTTTGGTACTGCTAAGCAGGTGCAAAATGGAATTTTGGTACTGCCCGGCAGTGTCAAATTTACCATTTTTCTCCGATTTTCGAAGTGTTTGCATCAATTTTGTTGCTTTAAAAGCCGGAAAATACGATTTTTAATGGAAAATCTCAATTTTGAGGTTGTTATAACTGGAAAAGTTGATTTTCAATACAAAAATTCATCTAAAATCCATTTTTTTTTTCGGTAAAAAATGTGTTTTTCGAAATTTTTCGGTAGATTTTCGGGGTAAAATTATCCGAAATATCATGTTTTTAGATGAACAACAGAATTTCCAGTTAATTTTCAAGAAGAAACATCTGAAAATTCAAAGTTTCAAACAAAATTTTACAGCTCGATTTGCAGCTCGAAATGACCTCATTTTCACAGAAATGTTTCCAAAACGAATTAAAGACAAAAAATGACTGATTTATTCAGAAAAAA</canonical>
            <polymorphic>ATGTTGACTCAGCAAAAAGTGAGTAAAATGGCTCAAATTAACCCAAAAATGTGGAAAATTTGCGTTAAATTGTCCTAGAATTACCTGAAAAACGCTTTGAATAACTCAAATTTCGTTTTAAATTGTCCAAAATTAGCCTACAATGGCTTCAAAATAGCTGAAATTCGCCAAAAAACCACACAAAATACCCAAATCTTTGTAGAAATCCATTTTGGTACTGCTCAGCAGTAGTAAAATCCATTGTGCTGCAGCTGGGCAGGTGCAAAATTCCCATTTTCTCCGGTTTTCAAAGTTTTCGCATCAAATTTGTTGCTTTTAAAGCCGGAAAACACAATTTTCGAATGGAAAATCCCATTTTTGAGCTCATTATCACTGAAAAATTTTATTTTCGACACAAAAAATCACCTCAAAAAAAATTTTTTTTTCGAATTTTCGATATTTTTTACACGAAAAAGCGAATATCTAGATGTAAATCCAACGATTTCCGCATTGTTTCAGCMAAAAAATGACCGAAATGGTACAAAAAATTGACGAAAATCTTGGATTTTGGTACTGCTAAGCAGGTGCAAAATGGAATTTTGGTACTGCCCGGCAGTGTCAAATTTACCATTTTTCTCCGATTTTCGAAGTGTTTGCATCAATTTTGTTGCTTTAAAAGCCGGAAAATACGATTTTTAATGGAAAATCTCAATTTTGAGGTTGTTATAACTGGAAAAGTTGATTTTCAATACAAAAATTCATCTAAAATCCATTTTTTTTTTCGGTAAAAAATGTGTTTTTCGAAATTTTTCGGTAGATTTTCGGGGTAAAATTATCCGAAATATCATGTTTTTAGATGAACAACAGAATTTCCAGTTAATTTTCAAGAAGAAACATCTGAAAATTCAAAGTTTCAAACAAAATTTTACAGCTCGATTTGCAGCTCGAAATGACCTCATTTTCACAGAAATGTTTCCAAAACGAATTAAAGACAAAAAATGACTGATTTATTCAGAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTACACGAAAAAGCGAATATCTA</pcr_primer_p1>
		<pcr_primer_p2>CAAAATTGAGATTTTCCATTAAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TTACACGAAAAAGCGAATATCTAGATGTAAATCCAACGATTTCCGCATTGTTTCAGCAAAAAAATGACCGAAATGGTACAAAAAATTGACGAAAATCTTGGATTTTGGTACTGCTAAGCAGGTGCAAAATGGAATTTTGGTACTGCCCGGCAGTGTCAAATTTACCATTTTTCTCCGATTTTCGAAGTGTTTGCATCAATTTTGTTGCTTTAAAAGCCGGAAAATACGATTTTTAATGGAAAATCTCAATTTTG</canonical_amplicon>
		<polymorphic_amplicon>TTACACGAAAAAGCGAATATCTAGATGTAAATCCAACGATTTCCGCATTGTTTCAGCMAAAAAATGACCGAAATGGTACAAAAAATTGACGAAAATCTTGGATTTTGGTACTGCTAAGCAGGTGCAAAATGGAATTTTGGTACTGCCCGGCAGTGTCAAATTTACCATTTTTCTCCGATTTTCGAAGTGTTTGCATCAATTTTGTTGCTTTAAAAGCCGGAAAATACGATTTTTAATGGAAAATCTCAATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36554</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>78142</contig_pos>
        <strand></strand>
        <context>aatttatctt[C/G]gttactgtga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAGTTTATGCTAAAATTTCGGATCAGCAATTTTTTGATTAAATTTATCTT</left_flank>
        <right_flank>GTTACTGTGAAAGATAACAAAAAGTGATCAACTGATAAAATGTTTATCAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAATCTAAATAGTATGTATAAAAATATTGATTGACTTTTTTTTGTCCACCTACATGTACCGAACAATCCAATGTACCCTTGGAACCAATGTACACTAAGAACTCGATGCACCCTTTTTCGATGTACCCTTGGATACTGGGCCTGGCTACTGTAAGAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCATATTATCAGAAATCATCTGACCACTTTTTGATATCTCTTACAGGAACCAAGGTGAACTAGGTGAAAGTTAACAGTGCTTTTCAGAATTTCAAATAAATTTAAACATTTTTTGAAACAGTAAATATGTATTTCCCCGTTTTCTTCAAAATGGATCCTTGTGTCTGTCTGTGCTTCTTGCCATCCGGATATCTGCCTTTTTGTTAATTTTTGCATTCTTCCATTCGGTTTGAAGTAATTGAATCTAAAAATGTTTCAAGTTTATGCTAAAATTTCGGATCAGCAATTTTTTGATTAAATTTATCTTCGTTACTGTGAAAGATAACAAAAAGTGATCAACTGATAAAATGTTTATCATATTATCAGTAACATATTATCAGTTGACAACGTTTTGGTATCGTTTATAGGACCTGAGATAAATTGGCTCAAAGTACGGTGGCACCATATCCGAGGTTTCGCTATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATCTACTTCGGTTCCTGTGAGAGATAACAAACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCGGAATACAGTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATTTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTCGTGCAAATTCATTTGGAAATTCTCAATATTTGAGACACACCAAAATAGACAAACTTTATCAAATTTTAGGGCTTCACTAAAACTAAAAATTTCCAAA</canonical>
            <polymorphic>AGAAATCTAAATAGTATGTATAAAAATATTGATTGACTTTTTTTTGTCCACCTACATGTACCGAACAATCCAATGTACCCTTGGAACCAATGTACACTAAGAACTCGATGCACCCTTTTTCGATGTACCCTTGGATACTGGGCCTGGCTACTGTAAGAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCATATTATCAGAAATCATCTGACCACTTTTTGATATCTCTTACAGGAACCAAGGTGAACTAGGTGAAAGTTAACAGTGCTTTTCAGAATTTCAAATAAATTTAAACATTTTTTGAAACAGTAAATATGTATTTCCCCGTTTTCTTCAAAATGGATCCTTGTGTCTGTCTGTGCTTCTTGCCATCCGGATATCTGCCTTTTTGTTAATTTTTGCATTCTTCCATTCGGTTTGAAGTAATTGAATCTAAAAATGTTTCAAGTTTATGCTAAAATTTCGGATCAGCAATTTTTTGATTAAATTTATCTTSGTTACTGTGAAAGATAACAAAAAGTGATCAACTGATAAAATGTTTATCATATTATCAGTAACATATTATCAGTTGACAACGTTTTGGTATCGTTTATAGGACCTGAGATAAATTGGCTCAAAGTACGGTGGCACCATATCCGAGGTTTCGCTATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATCTACTTCGGTTCCTGTGAGAGATAACAAACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCGGAATACAGTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATTTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTCGTGCAAATTCATTTGGAAATTCTCAATATTTGAGACACACCAAAATAGACAAACTTTATCAAATTTTAGGGCTTCACTAAAACTAAAAATTTCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTGAAGTAATTGAATCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCCTTTTAATAGCGAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GGTTTGAAGTAATTGAATCTAAAAATGTTTCAAGTTTATGCTAAAATTTCGGATCAGCAATTTTTTGATTAAATTTATCTTCGTTACTGTGAAAGATAACAAAAAGTGATCAACTGATAAAATGTTTATCATATTATCAGTAACATATTATCAGTTGACAACGTTTTGGTATCGTTTATAGGACCTGAGATAAATTGGCTCAAAGTACGGTGGCACCATATCCGAGGTTTCGCTATTAAAAGGG</canonical_amplicon>
		<polymorphic_amplicon>GGTTTGAAGTAATTGAATCTAAAAATGTTTCAAGTTTATGCTAAAATTTCGGATCAGCAATTTTTTGATTAAATTTATCTTSGTTACTGTGAAAGATAACAAAAAGTGATCAACTGATAAAATGTTTATCATATTATCAGTAACATATTATCAGTTGACAACGTTTTGGTATCGTTTATAGGACCTGAGATAAATTGGCTCAAAGTACGGTGGCACCATATCCGAGGTTTCGCTATTAAAAGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36555</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>78227</contig_pos>
        <strand></strand>
        <context>gacaacgttt[T/C]ggtatcgttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATAAAATGTTTATCATATTATCAGTAACATATTATCAGTTGACAACGTTT</left_flank>
        <right_flank>GGTATCGTTTATAGGACCTGAGATAAATTGGCTCAAAGTACGGTGGCACC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAATGTACACTAAGAACTCGATGCACCCTTTTTCGATGTACCCTTGGATACTGGGCCTGGCTACTGTAAGAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCATATTATCAGAAATCATCTGACCACTTTTTGATATCTCTTACAGGAACCAAGGTGAACTAGGTGAAAGTTAACAGTGCTTTTCAGAATTTCAAATAAATTTAAACATTTTTTGAAACAGTAAATATGTATTTCCCCGTTTTCTTCAAAATGGATCCTTGTGTCTGTCTGTGCTTCTTGCCATCCGGATATCTGCCTTTTTGTTAATTTTTGCATTCTTCCATTCGGTTTGAAGTAATTGAATCTAAAAATGTTTCAAGTTTATGCTAAAATTTCGGATCAGCAATTTTTTGATTAAATTTATCTTCGTTACTGTGAAAGATAACAAAAAGTGATCAACTGATAAAATGTTTATCATATTATCAGTAACATATTATCAGTTGACAACGTTTTGGTATCGTTTATAGGACCTGAGATAAATTGGCTCAAAGTACGGTGGCACCATATCCGAGGTTTCGCTATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATCTACTTCGGTTCCTGTGAGAGATAACAAACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCGGAATACAGTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATTTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTCGTGCAAATTCATTTGGAAATTCTCAATATTTGAGACACACCAAAATAGACAAACTTTATCAAATTTTAGGGCTTCACTAAAACTAAAAATTTCCAAAATCCTAATCCCTAAATTGCCAAAATTTAGTAATAACATCAGTTACGGAATTCGCCTAGACGACTTTTGTAAGGTTTCCAAATCTT</canonical>
            <polymorphic>ACCAATGTACACTAAGAACTCGATGCACCCTTTTTCGATGTACCCTTGGATACTGGGCCTGGCTACTGTAAGAGATATCAAAAAGTTGTCAACTGATAAAATGTTTATCATATTATCAGAAATCATCTGACCACTTTTTGATATCTCTTACAGGAACCAAGGTGAACTAGGTGAAAGTTAACAGTGCTTTTCAGAATTTCAAATAAATTTAAACATTTTTTGAAACAGTAAATATGTATTTCCCCGTTTTCTTCAAAATGGATCCTTGTGTCTGTCTGTGCTTCTTGCCATCCGGATATCTGCCTTTTTGTTAATTTTTGCATTCTTCCATTCGGTTTGAAGTAATTGAATCTAAAAATGTTTCAAGTTTATGCTAAAATTTCGGATCAGCAATTTTTTGATTAAATTTATCTTCGTTACTGTGAAAGATAACAAAAAGTGATCAACTGATAAAATGTTTATCATATTATCAGTAACATATTATCAGTTGACAACGTTTYGGTATCGTTTATAGGACCTGAGATAAATTGGCTCAAAGTACGGTGGCACCATATCCGAGGTTTCGCTATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATCTACTTCGGTTCCTGTGAGAGATAACAAACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCGGAATACAGTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATTTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTCGTGCAAATTCATTTGGAAATTCTCAATATTTGAGACACACCAAAATAGACAAACTTTATCAAATTTTAGGGCTTCACTAAAACTAAAAATTTCCAAAATCCTAATCCCTAAATTGCCAAAATTTAGTAATAACATCAGTTACGGAATTCGCCTAGACGACTTTTGTAAGGTTTCCAAATCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTGAAGTAATTGAATCTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCCTTTTAATAGCGAAACCT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GGTTTGAAGTAATTGAATCTAAAAATGTTTCAAGTTTATGCTAAAATTTCGGATCAGCAATTTTTTGATTAAATTTATCTTCGTTACTGTGAAAGATAACAAAAAGTGATCAACTGATAAAATGTTTATCATATTATCAGTAACATATTATCAGTTGACAACGTTTTGGTATCGTTTATAGGACCTGAGATAAATTGGCTCAAAGTACGGTGGCACCATATCCGAGGTTTCGCTATTAAAAGGG</canonical_amplicon>
		<polymorphic_amplicon>GGTTTGAAGTAATTGAATCTAAAAATGTTTCAAGTTTATGCTAAAATTTCGGATCAGCAATTTTTTGATTAAATTTATCTTCGTTACTGTGAAAGATAACAAAAAGTGATCAACTGATAAAATGTTTATCATATTATCAGTAACATATTATCAGTTGACAACGTTTYGGTATCGTTTATAGGACCTGAGATAAATTGGCTCAAAGTACGGTGGCACCATATCCGAGGTTTCGCTATTAAAAGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36556</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>78333</contig_pos>
        <strand></strand>
        <context>tcaaatcaat[C/T]tacttcggtt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAGGTTTCGCTATTAAAAGGGGATTTTGATGACACAATTTCAAATCAAT</left_flank>
        <right_flank>TACTTCGGTTCCTGTGAGAGATAACAAACAGTGATCAACTGATAAAGTGT</right_flank>
        <qual_score>46</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCATATTATCAGAAATCATCTGACCACTTTTTGATATCTCTTACAGGAACCAAGGTGAACTAGGTGAAAGTTAACAGTGCTTTTCAGAATTTCAAATAAATTTAAACATTTTTTGAAACAGTAAATATGTATTTCCCCGTTTTCTTCAAAATGGATCCTTGTGTCTGTCTGTGCTTCTTGCCATCCGGATATCTGCCTTTTTGTTAATTTTTGCATTCTTCCATTCGGTTTGAAGTAATTGAATCTAAAAATGTTTCAAGTTTATGCTAAAATTTCGGATCAGCAATTTTTTGATTAAATTTATCTTCGTTACTGTGAAAGATAACAAAAAGTGATCAACTGATAAAATGTTTATCATATTATCAGTAACATATTATCAGTTGACAACGTTTTGGTATCGTTTATAGGACCTGAGATAAATTGGCTCAAAGTACGGTGGCACCATATCCGAGGTTTCGCTATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATCTACTTCGGTTCCTGTGAGAGATAACAAACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCGGAATACAGTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATTTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTCGTGCAAATTCATTTGGAAATTCTCAATATTTGAGACACACCAAAATAGACAAACTTTATCAAATTTTAGGGCTTCACTAAAACTAAAAATTTCCAAAATCCTAATCCCTAAATTGCCAAAATTTAGTAATAACATCAGTTACGGAATTCGCCTAGACGACTTTTGTAAGGTTTCCAAATCTTAGAAAATCTCGAAATTTCCTGTTTCCTGATGACCCGGAAACTTCTAGAAGCCCCATGCGTTTTCAGATCCGCCCCCACTTGGGTTCAAGCGAGGGGGTCAGAAAGC</canonical>
            <polymorphic>ATCATATTATCAGAAATCATCTGACCACTTTTTGATATCTCTTACAGGAACCAAGGTGAACTAGGTGAAAGTTAACAGTGCTTTTCAGAATTTCAAATAAATTTAAACATTTTTTGAAACAGTAAATATGTATTTCCCCGTTTTCTTCAAAATGGATCCTTGTGTCTGTCTGTGCTTCTTGCCATCCGGATATCTGCCTTTTTGTTAATTTTTGCATTCTTCCATTCGGTTTGAAGTAATTGAATCTAAAAATGTTTCAAGTTTATGCTAAAATTTCGGATCAGCAATTTTTTGATTAAATTTATCTTCGTTACTGTGAAAGATAACAAAAAGTGATCAACTGATAAAATGTTTATCATATTATCAGTAACATATTATCAGTTGACAACGTTTTGGTATCGTTTATAGGACCTGAGATAAATTGGCTCAAAGTACGGTGGCACCATATCCGAGGTTTCGCTATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATYTACTTCGGTTCCTGTGAGAGATAACAAACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCGGAATACAGTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATTTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTCGTGCAAATTCATTTGGAAATTCTCAATATTTGAGACACACCAAAATAGACAAACTTTATCAAATTTTAGGGCTTCACTAAAACTAAAAATTTCCAAAATCCTAATCCCTAAATTGCCAAAATTTAGTAATAACATCAGTTACGGAATTCGCCTAGACGACTTTTGTAAGGTTTCCAAATCTTAGAAAATCTCGAAATTTCCTGTTTCCTGATGACCCGGAAACTTCTAGAAGCCCCATGCGTTTTCAGATCCGCCCCCACTTGGGTTCAAGCGAGGGGGTCAGAAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATCCGAGGTTTCGCTATTA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCGAACCCATTTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>202</pcr_amplicon_size>
		<canonical_amplicon>ATATCCGAGGTTTCGCTATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATCTACTTCGGTTCCTGTGAGAGATAACAAACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCGGAATACAGTAACCAAGAAAAATGGGTTCGAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATATCCGAGGTTTCGCTATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATYTACTTCGGTTCCTGTGAGAGATAACAAACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCGGAATACAGTAACCAAGAAAAATGGGTTCGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36557</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>78344</contig_pos>
        <strand></strand>
        <context>tacttcggtt[C/T]ctgtgagaga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATCTACTTCGGTT</left_flank>
        <right_flank>CTGTGAGAGATAACAAACAGTGATCAACTGATAAAGTGTTTATCATAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAATCATCTGACCACTTTTTGATATCTCTTACAGGAACCAAGGTGAACTAGGTGAAAGTTAACAGTGCTTTTCAGAATTTCAAATAAATTTAAACATTTTTTGAAACAGTAAATATGTATTTCCCCGTTTTCTTCAAAATGGATCCTTGTGTCTGTCTGTGCTTCTTGCCATCCGGATATCTGCCTTTTTGTTAATTTTTGCATTCTTCCATTCGGTTTGAAGTAATTGAATCTAAAAATGTTTCAAGTTTATGCTAAAATTTCGGATCAGCAATTTTTTGATTAAATTTATCTTCGTTACTGTGAAAGATAACAAAAAGTGATCAACTGATAAAATGTTTATCATATTATCAGTAACATATTATCAGTTGACAACGTTTTGGTATCGTTTATAGGACCTGAGATAAATTGGCTCAAAGTACGGTGGCACCATATCCGAGGTTTCGCTATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATCTACTTCGGTTCCTGTGAGAGATAACAAACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCGGAATACAGTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATTTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTCGTGCAAATTCATTTGGAAATTCTCAATATTTGAGACACACCAAAATAGACAAACTTTATCAAATTTTAGGGCTTCACTAAAACTAAAAATTTCCAAAATCCTAATCCCTAAATTGCCAAAATTTAGTAATAACATCAGTTACGGAATTCGCCTAGACGACTTTTGTAAGGTTTCCAAATCTTAGAAAATCTCGAAATTTCCTGTTTCCTGATGACCCGGAAACTTCTAGAAGCCCCATGCGTTTTCAGATCCGCCCCCACTTGGGTTCAAGCGAGGGGGTCAGAAAGCGCAGTAAATTT</canonical>
            <polymorphic>AGAAATCATCTGACCACTTTTTGATATCTCTTACAGGAACCAAGGTGAACTAGGTGAAAGTTAACAGTGCTTTTCAGAATTTCAAATAAATTTAAACATTTTTTGAAACAGTAAATATGTATTTCCCCGTTTTCTTCAAAATGGATCCTTGTGTCTGTCTGTGCTTCTTGCCATCCGGATATCTGCCTTTTTGTTAATTTTTGCATTCTTCCATTCGGTTTGAAGTAATTGAATCTAAAAATGTTTCAAGTTTATGCTAAAATTTCGGATCAGCAATTTTTTGATTAAATTTATCTTCGTTACTGTGAAAGATAACAAAAAGTGATCAACTGATAAAATGTTTATCATATTATCAGTAACATATTATCAGTTGACAACGTTTTGGTATCGTTTATAGGACCTGAGATAAATTGGCTCAAAGTACGGTGGCACCATATCCGAGGTTTCGCTATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATCTACTTCGGTTYCTGTGAGAGATAACAAACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCGGAATACAGTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATTTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTCGTGCAAATTCATTTGGAAATTCTCAATATTTGAGACACACCAAAATAGACAAACTTTATCAAATTTTAGGGCTTCACTAAAACTAAAAATTTCCAAAATCCTAATCCCTAAATTGCCAAAATTTAGTAATAACATCAGTTACGGAATTCGCCTAGACGACTTTTGTAAGGTTTCCAAATCTTAGAAAATCTCGAAATTTCCTGTTTCCTGATGACCCGGAAACTTCTAGAAGCCCCATGCGTTTTCAGATCCGCCCCCACTTGGGTTCAAGCGAGGGGGTCAGAAAGCGCAGTAAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 285 107 68 38</canonical_bands>
                <polymorphic_bands>570 285 107 38</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTAAAAGGGGATTTTGATG</pcr_primer_p1>
		<pcr_primer_p2>ATGAATTTGCACGAAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>CTATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATCTACTTCGGTTCCTGTGAGAGATAACAAACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCGGAATACAGTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATTTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTCGTGCAAATTCAT</canonical_amplicon>
		<polymorphic_amplicon>CTATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATCTACTTCGGTTYCTGTGAGAGATAACAAACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCGGAATACAGTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATTTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTCGTGCAAATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36558</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>78360</contig_pos>
        <strand></strand>
        <context>agagataaca[A/G]acagtgatca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATGACACAATTTCAAATCAATCTACTTCGGTTCCTGTGAGAGATAACA</left_flank>
        <right_flank>ACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTTGATATCTCTTACAGGAACCAAGGTGAACTAGGTGAAAGTTAACAGTGCTTTTCAGAATTTCAAATAAATTTAAACATTTTTTGAAACAGTAAATATGTATTTCCCCGTTTTCTTCAAAATGGATCCTTGTGTCTGTCTGTGCTTCTTGCCATCCGGATATCTGCCTTTTTGTTAATTTTTGCATTCTTCCATTCGGTTTGAAGTAATTGAATCTAAAAATGTTTCAAGTTTATGCTAAAATTTCGGATCAGCAATTTTTTGATTAAATTTATCTTCGTTACTGTGAAAGATAACAAAAAGTGATCAACTGATAAAATGTTTATCATATTATCAGTAACATATTATCAGTTGACAACGTTTTGGTATCGTTTATAGGACCTGAGATAAATTGGCTCAAAGTACGGTGGCACCATATCCGAGGTTTCGCTATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATCTACTTCGGTTCCTGTGAGAGATAACAAACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCGGAATACAGTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATTTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTCGTGCAAATTCATTTGGAAATTCTCAATATTTGAGACACACCAAAATAGACAAACTTTATCAAATTTTAGGGCTTCACTAAAACTAAAAATTTCCAAAATCCTAATCCCTAAATTGCCAAAATTTAGTAATAACATCAGTTACGGAATTCGCCTAGACGACTTTTGTAAGGTTTCCAAATCTTAGAAAATCTCGAAATTTCCTGTTTCCTGATGACCCGGAAACTTCTAGAAGCCCCATGCGTTTTCAGATCCGCCCCCACTTGGGTTCAAGCGAGGGGGTCAGAAAGCGCAGTAAATTTAGGAAAAATTCTAAAT</canonical>
            <polymorphic>CTTTTTGATATCTCTTACAGGAACCAAGGTGAACTAGGTGAAAGTTAACAGTGCTTTTCAGAATTTCAAATAAATTTAAACATTTTTTGAAACAGTAAATATGTATTTCCCCGTTTTCTTCAAAATGGATCCTTGTGTCTGTCTGTGCTTCTTGCCATCCGGATATCTGCCTTTTTGTTAATTTTTGCATTCTTCCATTCGGTTTGAAGTAATTGAATCTAAAAATGTTTCAAGTTTATGCTAAAATTTCGGATCAGCAATTTTTTGATTAAATTTATCTTCGTTACTGTGAAAGATAACAAAAAGTGATCAACTGATAAAATGTTTATCATATTATCAGTAACATATTATCAGTTGACAACGTTTTGGTATCGTTTATAGGACCTGAGATAAATTGGCTCAAAGTACGGTGGCACCATATCCGAGGTTTCGCTATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATCTACTTCGGTTCCTGTGAGAGATAACARACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCGGAATACAGTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATTTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTCGTGCAAATTCATTTGGAAATTCTCAATATTTGAGACACACCAAAATAGACAAACTTTATCAAATTTTAGGGCTTCACTAAAACTAAAAATTTCCAAAATCCTAATCCCTAAATTGCCAAAATTTAGTAATAACATCAGTTACGGAATTCGCCTAGACGACTTTTGTAAGGTTTCCAAATCTTAGAAAATCTCGAAATTTCCTGTTTCCTGATGACCCGGAAACTTCTAGAAGCCCCATGCGTTTTCAGATCCGCCCCCACTTGGGTTCAAGCGAGGGGGTCAGAAAGCGCAGTAAATTTAGGAAAAATTCTAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTAAAAGGGGATTTTGATGA</pcr_primer_p1>
		<pcr_primer_p2>ATGAATTTGCACGAAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>TATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATCTACTTCGGTTCCTGTGAGAGATAACAAACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCGGAATACAGTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATTTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTCGTGCAAATTCAT</canonical_amplicon>
		<polymorphic_amplicon>TATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATCTACTTCGGTTCCTGTGAGAGATAACARACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCGGAATACAGTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATTTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTCGTGCAAATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36559</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>78446</contig_pos>
        <strand></strand>
        <context>acagtaatcg[G/A]aataCAGTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCG</left_flank>
        <right_flank>AATACAGTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAAACAGTAAATATGTATTTCCCCGTTTTCTTCAAAATGGATCCTTGTGTCTGTCTGTGCTTCTTGCCATCCGGATATCTGCCTTTTTGTTAATTTTTGCATTCTTCCATTCGGTTTGAAGTAATTGAATCTAAAAATGTTTCAAGTTTATGCTAAAATTTCGGATCAGCAATTTTTTGATTAAATTTATCTTCGTTACTGTGAAAGATAACAAAAAGTGATCAACTGATAAAATGTTTATCATATTATCAGTAACATATTATCAGTTGACAACGTTTTGGTATCGTTTATAGGACCTGAGATAAATTGGCTCAAAGTACGGTGGCACCATATCCGAGGTTTCGCTATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATCTACTTCGGTTCCTGTGAGAGATAACAAACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCGGAATACAGTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATTTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTCGTGCAAATTCATTTGGAAATTCTCAATATTTGAGACACACCAAAATAGACAAACTTTATCAAATTTTAGGGCTTCACTAAAACTAAAAATTTCCAAAATCCTAATCCCTAAATTGCCAAAATTTAGTAATAACATCAGTTACGGAATTCGCCTAGACGACTTTTGTAAGGTTTCCAAATCTTAGAAAATCTCGAAATTTCCTGTTTCCTGATGACCCGGAAACTTCTAGAAGCCCCATGCGTTTTCAGATCCGCCCCCACTTGGGTTCAAGCGAGGGGGTCAGAAAGCGCAGTAAATTTAGGAAAAATTCTAAATTCGCTGCCGAATTTCGTTGGCTGAGTTTCACAGTTTTAAATGAAGAAAAGCGCGCCTTGCAGCCAGTTGATTTTGAAGAAATAGAT</canonical>
            <polymorphic>TTGAAACAGTAAATATGTATTTCCCCGTTTTCTTCAAAATGGATCCTTGTGTCTGTCTGTGCTTCTTGCCATCCGGATATCTGCCTTTTTGTTAATTTTTGCATTCTTCCATTCGGTTTGAAGTAATTGAATCTAAAAATGTTTCAAGTTTATGCTAAAATTTCGGATCAGCAATTTTTTGATTAAATTTATCTTCGTTACTGTGAAAGATAACAAAAAGTGATCAACTGATAAAATGTTTATCATATTATCAGTAACATATTATCAGTTGACAACGTTTTGGTATCGTTTATAGGACCTGAGATAAATTGGCTCAAAGTACGGTGGCACCATATCCGAGGTTTCGCTATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATCTACTTCGGTTCCTGTGAGAGATAACAAACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCGRAATACAGTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATTTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTCGTGCAAATTCATTTGGAAATTCTCAATATTTGAGACACACCAAAATAGACAAACTTTATCAAATTTTAGGGCTTCACTAAAACTAAAAATTTCCAAAATCCTAATCCCTAAATTGCCAAAATTTAGTAATAACATCAGTTACGGAATTCGCCTAGACGACTTTTGTAAGGTTTCCAAATCTTAGAAAATCTCGAAATTTCCTGTTTCCTGATGACCCGGAAACTTCTAGAAGCCCCATGCGTTTTCAGATCCGCCCCCACTTGGGTTCAAGCGAGGGGGTCAGAAAGCGCAGTAAATTTAGGAAAAATTCTAAATTCGCTGCCGAATTTCGTTGGCTGAGTTTCACAGTTTTAAATGAAGAAAAGCGCGCCTTGCAGCCAGTTGATTTTGAAGAAATAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>347 172 165 162 119 35</canonical_bands>
                <polymorphic_bands>509 172 165 119 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTAAAAGGGGATTTTGATGA</pcr_primer_p1>
		<pcr_primer_p2>ATGAATTTGCACGAAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>TATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATCTACTTCGGTTCCTGTGAGAGATAACAAACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCGGAATACAGTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATTTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTCGTGCAAATTCAT</canonical_amplicon>
		<polymorphic_amplicon>TATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATCTACTTCGGTTCCTGTGAGAGATAACAAACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCGRAATACAGTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATTTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTCGTGCAAATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36560</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>78495</contig_pos>
        <strand></strand>
        <context>aaaaaaataa[T/G]ttttcaattt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GGAATACAGTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAA</left_flank>
        <right_flank>TTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTC</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTCTGTCTGTGCTTCTTGCCATCCGGATATCTGCCTTTTTGTTAATTTTTGCATTCTTCCATTCGGTTTGAAGTAATTGAATCTAAAAATGTTTCAAGTTTATGCTAAAATTTCGGATCAGCAATTTTTTGATTAAATTTATCTTCGTTACTGTGAAAGATAACAAAAAGTGATCAACTGATAAAATGTTTATCATATTATCAGTAACATATTATCAGTTGACAACGTTTTGGTATCGTTTATAGGACCTGAGATAAATTGGCTCAAAGTACGGTGGCACCATATCCGAGGTTTCGCTATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATCTACTTCGGTTCCTGTGAGAGATAACAAACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCGGAATACAGTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATTTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTCGTGCAAATTCATTTGGAAATTCTCAATATTTGAGACACACCAAAATAGACAAACTTTATCAAATTTTAGGGCTTCACTAAAACTAAAAATTTCCAAAATCCTAATCCCTAAATTGCCAAAATTTAGTAATAACATCAGTTACGGAATTCGCCTAGACGACTTTTGTAAGGTTTCCAAATCTTAGAAAATCTCGAAATTTCCTGTTTCCTGATGACCCGGAAACTTCTAGAAGCCCCATGCGTTTTCAGATCCGCCCCCACTTGGGTTCAAGCGAGGGGGTCAGAAAGCGCAGTAAATTTAGGAAAAATTCTAAATTCGCTGCCGAATTTCGTTGGCTGAGTTTCACAGTTTTAAATGAAGAAAAGCGCGCCTTGCAGCCAGTTGATTTTGAAGAAATAGATCATGATCTAGAGCAAACCCGCGTCCACTTTAAAATTATTAAATTTCTTT</canonical>
            <polymorphic>TGTCTGTCTGTGCTTCTTGCCATCCGGATATCTGCCTTTTTGTTAATTTTTGCATTCTTCCATTCGGTTTGAAGTAATTGAATCTAAAAATGTTTCAAGTTTATGCTAAAATTTCGGATCAGCAATTTTTTGATTAAATTTATCTTCGTTACTGTGAAAGATAACAAAAAGTGATCAACTGATAAAATGTTTATCATATTATCAGTAACATATTATCAGTTGACAACGTTTTGGTATCGTTTATAGGACCTGAGATAAATTGGCTCAAAGTACGGTGGCACCATATCCGAGGTTTCGCTATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATCTACTTCGGTTCCTGTGAGAGATAACAAACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCGGAATACAGTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAAKTTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTCGTGCAAATTCATTTGGAAATTCTCAATATTTGAGACACACCAAAATAGACAAACTTTATCAAATTTTAGGGCTTCACTAAAACTAAAAATTTCCAAAATCCTAATCCCTAAATTGCCAAAATTTAGTAATAACATCAGTTACGGAATTCGCCTAGACGACTTTTGTAAGGTTTCCAAATCTTAGAAAATCTCGAAATTTCCTGTTTCCTGATGACCCGGAAACTTCTAGAAGCCCCATGCGTTTTCAGATCCGCCCCCACTTGGGTTCAAGCGAGGGGGTCAGAAAGCGCAGTAAATTTAGGAAAAATTCTAAATTCGCTGCCGAATTTCGTTGGCTGAGTTTCACAGTTTTAAATGAAGAAAAGCGCGCCTTGCAGCCAGTTGATTTTGAAGAAATAGATCATGATCTAGAGCAAACCCGCGTCCACTTTAAAATTATTAAATTTCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>156 121 109 100 66 50 44 44 34 31 29 26 25 23 21 18 14 13 12 12 11 9 9 8 8 7</canonical_bands>
                <polymorphic_bands>156 121 109 100 66 50 44 44 34 31 29 26 26 25 23 21 14 13 12 12 11 9 9 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTAAAAGGGGATTTTGATGA</pcr_primer_p1>
		<pcr_primer_p2>ATGAATTTGCACGAAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>TATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATCTACTTCGGTTCCTGTGAGAGATAACAAACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCGGAATACAGTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATTTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTCGTGCAAATTCAT</canonical_amplicon>
		<polymorphic_amplicon>TATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATCTACTTCGGTTCCTGTGAGAGATAACAAACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCGGAATACAGTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAAKTTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTCGTGCAAATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36561</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>78577</contig_pos>
        <strand>+</strand>
        <context>CTCAATMTTT[G/T]AGACACACCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTTTTTTTTCCATTTTTCGTGCAAATTCATTTGGAAATTCTCAATATTT</left_flank>
        <right_flank>AGACACACCAAAATAGACAAACTTTATCAAATTTTAGGGCTTCACTAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAAAAATGTTTCAAGTTTATGCTAAAATTTCGGATCAGCAATTTTTTGATTAAATTTATCTTCGTTACTGTGAAAGATAACAAAAAGTGATCAACTGATAAAATGTTTATCATATTATCAGTAACATATTATCAGTTGACAACGTTTTGGTATCGTTTATAGGACCTGAGATAAATTGGCTCAAAGTACGGTGGCACCATATCCGAGGTTTCGCTATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATCTACTTCGGTTCCTGTGAGAGATAACAAACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCGGAATACAGTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATTTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTCGTGCAAATTCATTTGGAAATTCTCAATATTTGAGACACACCAAAATAGACAAACTTTATCAAATTTTAGGGCTTCACTAAAACTAAAAATTTCCAAAATCCTAATCCCTAAATTGCCAAAATTTAGTAATAACATCAGTTACGGAATTCGCCTAGACGACTTTTGTAAGGTTTCCAAATCTTAGAAAATCTCGAAATTTCCTGTTTCCTGATGACCCGGAAACTTCTAGAAGCCCCATGCGTTTTCAGATCCGCCCCCACTTGGGTTCAAGCGAGGGGGTCAGAAAGCGCAGTAAATTTAGGAAAAATTCTAAATTCGCTGCCGAATTTCGTTGGCTGAGTTTCACAGTTTTAAATGAAGAAAAGCGCGCCTTGCAGCCAGTTGATTTTGAAGAAATAGATCATGATCTAGAGCAAACCCGCGTCCACTTTAAAATTATTAAATTTCTTTTGGCCTACGAGTTTGCTGGGGCGCGCTTTCTGACGCCCCTCGCTTGAACCCAAGCCCCCACTCGAAATTTTTGATCTAATTT</canonical>
            <polymorphic>TCTAAAAATGTTTCAAGTTTATGCTAAAATTTCGGATCAGCAATTTTTTGATTAAATTTATCTTCGTTACTGTGAAAGATAACAAAAAGTGATCAACTGATAAAATGTTTATCATATTATCAGTAACATATTATCAGTTGACAACGTTTTGGTATCGTTTATAGGACCTGAGATAAATTGGCTCAAAGTACGGTGGCACCATATCCGAGGTTTCGCTATTAAAAGGGGATTTTGATGACACAATTTCAAATCAATCTACTTCGGTTCCTGTGAGAGATAACAAACAGTGATCAACTGATAAAGTGTTTATCATAAAATCACAAACATTTTATCAGTTGACAACTTTTTGATATCTCTTACAGTAATCGGAATACAGTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATTTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTCGTGCAAATTCATTTGGAAATTCTCAATATTTKAGACACACCAAAATAGACAAACTTTATCAAATTTTAGGGCTTCACTAAAACTAAAAATTTCCAAAATCCTAATCCCTAAATTGCCAAAATTTAGTAATAACATCAGTTACGGAATTCGCCTAGACGACTTTTGTAAGGTTTCCAAATCTTAGAAAATCTCGAAATTTCCTGTTTCCTGATGACCCGGAAACTTCTAGAAGCCCCATGCGTTTTCAGATCCGCCCCCACTTGGGTTCAAGCGAGGGGGTCAGAAAGCGCAGTAAATTTAGGAAAAATTCTAAATTCGCTGCCGAATTTCGTTGGCTGAGTTTCACAGTTTTAAATGAAGAAAAGCGCGCCTTGCAGCCAGTTGATTTTGAAGAAATAGATCATGATCTAGAGCAAACCCGCGTCCACTTTAAAATTATTAAATTTCTTTTGGCCTACGAGTTTGCTGGGGCGCGCTTTCTGACGCCCCTCGCTTGAACCCAAGCCCCCACTCGAAATTTTTGATCTAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAACCAAGAAAAATGGGTTC</pcr_primer_p1>
		<pcr_primer_p2>CGAATTCCGTAACTGATGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATTTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTCGTGCAAATTCATTTGGAAATTCTCAATATTTGAGACACACCAAAATAGACAAACTTTATCAAATTTTAGGGCTTCACTAAAACTAAAAATTTCCAAAATCCTAATCCCTAAATTGCCAAAATTTAGTAATAACATCAGTTACGGAATTCG</canonical_amplicon>
		<polymorphic_amplicon>GTAACCAAGAAAAATGGGTTCGAATTTTCGAAAAAAAAATAATTTTTCAATTTTTTTTTTTGAAACAGTAATTCTGTTTTTTTTCCATTTTTCGTGCAAATTCATTTGGAAATTCTCAATATTTKAGACACACCAAAATAGACAAACTTTATCAAATTTTAGGGCTTCACTAAAACTAAAAATTTCCAAAATCCTAATCCCTAAATTGCCAAAATTTAGTAATAACATCAGTTACGGAATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36562</snp_id>
        <super_contig>c011101031.Contig1</super_contig>
        <contig_pos>90221</contig_pos>
        <strand></strand>
        <context>GCATGGGGAA[G/A]ATTCTTCCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTTCCCATACTATTTCTCTTCTCTCTGAACCCTAAGGGAGCATGGGGAA</left_flank>
        <right_flank>ATTCTTCCTTATAAAAACAAACCATTATTATTACTTTTTGAATCTCTCTA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTACAGGAATTTCTAAAATCCCGAATTTCTCCTCTGGAATTTTTGATTGGTCATCAAAAACGGTGTAAGAATTAGAAAAATGACCAAAATTTGAAACAGTAATTTTTTTTCAATTTTCGGAATAACAATTTTCAGAAAACGAAAGATCAGTTCGAATATTTTGAAAGTATCATTTCCTTTTTTTTCAATATTGCAACAGCAAGTCCCAAGAATTGCCGCTTCAAAATTAAAATCCTGAATTCTTGAATTCCCATAATAAAATTTCAAGAAAATTCTGGAACTTCTGAACATCTGAATCTCTGAATTTCTCGTTTTTTTTTCTGAAACTTTCCTCATTTAGTTTCTCTGTTTTCCCCCACCATTTTCAGCTTCATTTTCTTCCACTAGTTTCATTTCTTCCCCCCATCTCATTTCCCTATTTTTTCTCTTTTCTCTAACCACTCTCTCCATTTCCCATACTATTTCTCTTCTCTCTGAACCCTAAGGGAGCATGGGGAAGATTCTTCCTTATAAAAACAAACCATTATTATTACTTTTTGAATCTCTCTACTTTTATTTTTCATTTCATTTTTTTTCTCATATTACTGAGATCACGAGCATTGGAAAAAGAATCTGAAAACGCTGAAAATTTGAAACCATGATTTGGATGAGGAATACTGTAAATTCAAAATAAAAGATTTCAGGGAATTTTGAAACAGTAATTTTTTTAAAATTATTGTTTAAACAAGTTTCTTAAGAAATTCATAAATTTCATTTTTCCTAGAAAATTAGGAATTTTCGTATTTTTCTCATAAAAAAAGTAATAGGATTTCACTTTATAAGAAGTTTTAGGGTTTCTTCTTTCTCAAATTTCGGAATTTTGACACTAAAAATGGATTCCAAAATTTCAATTTTAAACATTTCATTGAGTTTCAAAAATGAATTTGAAAATCAAAATAATCCTAAAAACCCAGAAATTTTTAATTAGAAAAATCTTTGAAAATTGCTGTTTCAAAAATT</canonical>
            <polymorphic>TTTACAGGAATTTCTAAAATCCCGAATTTCTCCTCTGGAATTTTTGATTGGTCATCAAAAACGGTGTAAGAATTAGAAAAATGACCAAAATTTGAAACAGTAATTTTTTTTCAATTTTCGGAATAACAATTTTCAGAAAACGAAAGATCAGTTCGAATATTTTGAAAGTATCATTTCCTTTTTTTTCAATATTGCAACAGCAAGTCCCAAGAATTGCCGCTTCAAAATTAAAATCCTGAATTCTTGAATTCCCATAATAAAATTTCAAGAAAATTCTGGAACTTCTGAACATCTGAATCTCTGAATTTCTCGTTTTTTTTTCTGAAACTTTCCTCATTTAGTTTCTCTGTTTTCCCCCACCATTTTCAGCTTCATTTTCTTCCACTAGTTTCATTTCTTCCCCCCATCTCATTTCCCTATTTTTTCTCTTTTCTCTAACCACTCTCTCCATTTCCCATACTATTTCTCTTCTCTCTGAACCCTAAGGGAGCATGGGGAARATTCTTCCTTATAAAAACAAACCATTATTATTACTTTTTGAATCTCTCTACTTTTATTTTTCATTTCATTTTTTTTCTCATATTACTGAGATCACGAGCATTGGAAAAAGAATCTGAAAACGCTGAAAATTTGAAACCATGATTTGGATGAGGAATACTGTAAATTCAAAATAAAAGATTTCAGGGAATTTTGAAACAGTAATTTTTTTAAAATTATTGTTTAAACAAGTTTCTTAAGAAATTCATAAATTTCATTTTTCCTAGAAAATTAGGAATTTTCGTATTTTTCTCATAAAAAAAGTAATAGGATTTCACTTTATAAGAAGTTTTAGGGTTTCTTCTTTCTCAAATTTCGGAATTTTGACACTAAAAATGGATTCCAAAATTTCAATTTTAAACATTTCATTGAGTTTCAAAAATGAATTTGAAAATCAAAATAATCCTAAAAACCCAGAAATTTTTAATTAGAAAAATCTTTGAAAATTGCTGTTTCAAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>295 266 205 124 70 40</canonical_bands>
                <polymorphic_bands>295 266 245 124 70</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>295 266 205 124 70 40</canonical_bands>
                <polymorphic_bands>295 266 245 124 70</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTCTCCATTTCCCATACTATT</pcr_primer_p1>
		<pcr_primer_p2>AAATTCCCTGAAATCTTTTATTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTCTCCATTTCCCATACTATTTCTCTTCTCTCTGAACCCTAAGGGAGCATGGGGAAGATTCTTCCTTATAAAAACAAACCATTATTATTACTTTTTGAATCTCTCTACTTTTATTTTTCATTTCATTTTTTTTCTCATATTACTGAGATCACGAGCATTGGAAAAAGAATCTGAAAACGCTGAAAATTTGAAACCATGATTTGGATGAGGAATACTGTAAATTCAAAATAAAAGATTTCAGGGAATTT</canonical_amplicon>
		<polymorphic_amplicon>CTCTCTCCATTTCCCATACTATTTCTCTTCTCTCTGAACCCTAAGGGAGCATGGGGAARATTCTTCCTTATAAAAACAAACCATTATTATTACTTTTTGAATCTCTCTACTTTTATTTTTCATTTCATTTTTTTTCTCATATTACTGAGATCACGAGCATTGGAAAAAGAATCTGAAAACGCTGAAAATTTGAAACCATGATTTGGATGAGGAATACTGTAAATTCAAAATAAAAGATTTCAGGGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36563</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>11758</contig_pos>
        <strand>+</strand>
        <context>CTGTTACAAA[A/G]TAGCTGGACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTTCGTTGTAGAGTTTCTCTGGCACGATTCGATGGAGGCTGTTACAAA</left_flank>
        <right_flank>TAGCTGGACAGTTTGCTTGACCCTTTGGGATGATGCTGACACTGAAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCCCGTGGATATGTACAGAGGTGGAGGCGAGTGAATTTCGCCTGAAAAAAAAGGTCGATAATGATTAATGTAGAAAATTTCGACGCTTACATAAAGATCCAGTGGAATACGAGGGAAGAACTGATCCTTCTTGATGTTCTTTGGAATCTTGTTACTGTGTCCGTCGAGAACCTGCGTTCCATAGTACAAATCAACCGACATGTAAAACTCTGAGTATTCTCTTTGCCAGTCTTCTGGAATCGAGTGTACAGAGTTGAGCATGATTTGAAGAAAATCCATCTTCTCCAACACCTCGACTTTTGGTTTTGTGATGATTTGCAGTGGAGGAAGATTGTAACCACTGACAGTACATCTGCAGTAGAGCTCCAAAAATGAATGAATTTCACGGAGAAAGTCGTTGCGATGACTGTTAAGCTGGTCTTCCGTGGTGGCAGCCAGATACTTTTGCATTTCGTTGTAGAGTTTCTCTGGCACGATTCGATGGAGGCTGTTACAAAGTAGCTGGACAGTTTGCTTGACCCTTTGGGATGATGCTGACACTGAAATTTGGTATTTTTTTGAGTTACAGTATTGATCAACAAGATATAGAAAATTTTAAGGTTTTTGGTCATTTTCACACATGAGAGAATTATGTAAATTCGGGTTTTTCTTTCATTGCAACCTAAATTGTTAAGAAACTTAACATATTCCAGCTTGCATTTTACTACCATTGTGTGATTTGCACTTGTTTCACCCTTGAAGTCAAAGCTGTTTTTTTTTACAAATAACAAACTTAAGAAATTTCGGTGACCTCTACCTCGAAAAACCCCAAATTGACACAAATCTCTCATGTTTGGCCGTTTGACCATTTTCAAAAGTCTGGAGCTTGGTTGTCAAGCTTCCAATCACTTCGAAAATTTTGGTGGGTGTGAAGCAGTTCTAGCTTGAAAACAATGCATTTACAGAAATGTTTGAAAATCTCTAGTTTTTTTTTACCTATTTGCCAACTCAAGAAAGAC</canonical>
            <polymorphic>TCTCCCGTGGATATGTACAGAGGTGGAGGCGAGTGAATTTCGCCTGAAAAAAAAGGTCGATAATGATTAATGTAGAAAATTTCGACGCTTACATAAAGATCCAGTGGAATACGAGGGAAGAACTGATCCTTCTTGATGTTCTTTGGAATCTTGTTACTGTGTCCGTCGAGAACCTGCGTTCCATAGTACAAATCAACCGACATGTAAAACTCTGAGTATTCTCTTTGCCAGTCTTCTGGAATCGAGTGTACAGAGTTGAGCATGATTTGAAGAAAATCCATCTTCTCCAACACCTCGACTTTTGGTTTTGTGATGATTTGCAGTGGAGGAAGATTGTAACCACTGACAGTACATCTGCAGTAGAGCTCCAAAAATGAATGAATTTCACGGAGAAAGTCGTTGCGATGACTGTTAAGCTGGTCTTCCGTGGTGGCAGCCAGATACTTTTGCATTTCGTTGTAGAGTTTCTCTGGCACGATTCGATGGAGGCTGTTACAAARTAGCTGGACAGTTTGCTTGACCCTTTGGGATGATGCTGACACTGAAATTTGGTATTTTTTTGAGTTACAGTATTGATCAACAAGATATAGAAAATTTTAAGGTTTTTGGTCATTTTCACACATGAGAGAATTATGTAAATTCGGGTTTTTCTTTCATTGCAACCTAAATTGTTAAGAAACTTAACATATTCCAGCTTGCATTTTACTACCATTGTGTGATTTGCACTTGTTTCACCCTTGAAGTCAAAGCTGTTTTTTTTTACAAATAACAAACTTAAGAAATTTCGGTGACCTCTACCTCGAAAAACCCCAAATTGACACAAATCTCTCATGTTTGGCCGTTTGACCATTTTCAAAAGTCTGGAGCTTGGTTGTCAAGCTTCCAATCACTTCGAAAATTTTGGTGGGTGTGAAGCAGTTCTAGCTTGAAAACAATGCATTTACAGAAATGTTTGAAAATCTCTAGTTTTTTTTTACCTATTTGCCAACTCAAGAAAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAACCACTGACAGTACATCTG</pcr_primer_p1>
		<pcr_primer_p2>CTTGTTGATCAATACTGTAACTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTAACCACTGACAGTACATCTGCAGTAGAGCTCCAAAAATGAATGAATTTCACGGAGAAAGTCGTTGCGATGACTGTTAAGCTGGTCTTCCGTGGTGGCAGCCAGATACTTTTGCATTTCGTTGTAGAGTTTCTCTGGCACGATTCGATGGAGGCTGTTACAAAGTAGCTGGACAGTTTGCTTGACCCTTTGGGATGATGCTGACACTGAAATTTGGTATTTTTTTGAGTTACAGTATTGATCAACAAG</canonical_amplicon>
		<polymorphic_amplicon>TGTAACCACTGACAGTACATCTGCAGTAGAGCTCCAAAAATGAATGAATTTCACGGAGAAAGTCGTTGCGATGACTGTTAAGCTGGTCTTCCGTGGTGGCAGCCAGATACTTTTGCATTTCGTTGTAGAGTTTCTCTGGCACGATTCGATGGAGGCTGTTACAAARTAGCTGGACAGTTTGCTTGACCCTTTGGGATGATGCTGACACTGAAATTTGGTATTTTTTTGAGTTACAGTATTGATCAACAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36564</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>61172</contig_pos>
        <strand>+</strand>
        <context>TAAAACAATT[A/T]AAATCATCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGTACATAGTACTGTACATCTTCAATTAGAAAATTTCCTAAAACAATT</left_flank>
        <right_flank>AAATCATCAGAACACAAGCACTGAATTTTTAGTTTCTTCTTGTTCGGATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGACTAATCTGCAGGAATAGCTAAATCGGAACATTTCTATGTGTTATAATAAACAGATTACAAATCGATAGACAAATTACATATGAAATTTGCAACAGTACCGGATTCAGTTGCATTTCCGACCAATTTCAGAAGGTTAGAGCTCGGTTGTCAAGGTTACGATCACTTTAAAAACTTTGGAGAGTGTAAACCAGATCTAGAATAAAAATTTTGCACTCCCAGAATTTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCTGATTTCTGAAGGACACCCTCTTTAGTACGTTTTGTACTGAAAAACTAGAAATTTTCGAAAAATTCTGTGAATGCAAAGTTTTCAATCTAGATCTGTTTTACATCCTCCAAAATTTCCAACCTGATCGGAAACTCAACAATCAAGCACTAGAATCTTGAAAATGACCGATAATCGACTGAAAAACACGTTTTTGTACATAGTACTGTACATCTTCAATTAGAAAATTTCCTAAAACAATTAAAATCATCAGAACACAAGCACTGAATTTTTAGTTTCTTCTTGTTCGGATCTTCAATCCCCGGAAACACCCGAACTGCCTGGAAACACAAAAACTTCCGAGTATCATGTTTTTGTTTCACACAAAAAGGCAAACAATCCGATGAACGGACGTAACTGAACTCTCAGAATCTTATGATGAAAAAAAAAACCAAAGATCTAAATCTGCAAACTCTTTTCATAAAGAATGAATAGTGATGATGGGGTCCCGACGCTTATGAAAGTCCTAAAAACCAAAACCAGAGTCGCCTGACCCGGATTTGACAAATTGGGTTAGGTGCATGAACCTTGGCGCTCCGGAGGGTGTTGCAAAGAATGGGGGTTGCATATGGAATGGGTTCAGGTCATGATATCCTGGCCCAAAAAATGCACTCGTTTCAATATGAAACTGAAAAAATTGCAGTTTAAAGGGACCATAATACGCGTAGATCAATTTAAAACTTTAAAACCTAAAAGAAGCCAAG</canonical>
            <polymorphic>GTGACTAATCTGCAGGAATAGCTAAATCGGAACATTTCTATGTGTTATAATAAACAGATTACAAATCGATAGACAAATTACATATGAAATTTGCAACAGTACCGGATTCAGTTGCATTTCCGACCAATTTCAGAAGGTTAGAGCTCGGTTGTCAAGGTTACGATCACTTTAAAAACTTTGGAGAGTGTAAACCAGATCTAGAATAAAAATTTTGCACTCCCAGAATTTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCTGATTTCTGAAGGACACCCTCTTTAGTACGTTTTGTACTGAAAAACTAGAAATTTTCGAAAAATTCTGTGAATGCAAAGTTTTCAATCTAGATCTGTTTTACATCCTCCAAAATTTCCAACCTGATCGGAAACTCAACAATCAAGCACTAGAATCTTGAAAATGACCGATAATCGACTGAAAAACACGTTTTTGTACATAGTACTGTACATCTTCAATTAGAAAATTTCCTAAAACAATTWAAATCATCAGAACACAAGCACTGAATTTTTAGTTTCTTCTTGTTCGGATCTTCAATCCCCGGAAACACCCGAACTGCCTGGAAACACAAAAACTTCCGAGTATCATGTTTTTGTTTCACACAAAAAGGCAAACAATCCGATGAACGGACGTAACTGAACTCTCAGAATCTTATGATGAAAAAAAAAACCAAAGATCTAAATCTGCAAACTCTTTTCATAAAGAATGAATAGTGATGATGGGGTCCCGACGCTTATGAAAGTCCTAAAAACCAAAACCAGAGTCGCCTGACCCGGATTTGACAAATTGGGTTAGGTGCATGAACCTTGGCGCTCCGGAGGGTGTTGCAAAGAATGGGGGTTGCATATGGAATGGGTTCAGGTCATGATATCCTGGCCCAAAAAATGCACTCGTTTCAATATGAAACTGAAAAAATTGCAGTTTAAAGGGACCATAATACGCGTAGATCAATTTAAAACTTTAAAACCTAAAAGAAGCCAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>443 329 169 30 21 8</canonical_bands>
                <polymorphic_bands>772 169 30 21 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGATTACAAATCGATAGACAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAGATCCGAACAAGAAGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>498</pcr_amplicon_size>
		<canonical_amplicon>CAGATTACAAATCGATAGACAAATTACATATGAAATTTGCAACAGTACCGGATTCAGTTGCATTTCCGACCAATTTCAGAAGGTTAGAGCTCGGTTGTCAAGGTTACGATCACTTTAAAAACTTTGGAGAGTGTAAACCAGATCTAGAATAAAAATTTTGCACTCCCAGAATTTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCTGATTTCTGAAGGACACCCTCTTTAGTACGTTTTGTACTGAAAAACTAGAAATTTTCGAAAAATTCTGTGAATGCAAAGTTTTCAATCTAGATCTGTTTTACATCCTCCAAAATTTCCAACCTGATCGGAAACTCAACAATCAAGCACTAGAATCTTGAAAATGACCGATAATCGACTGAAAAACACGTTTTTGTACATAGTACTGTACATCTTCAATTAGAAAATTTCCTAAAACAATTAAAATCATCAGAACACAAGCACTGAATTTTTAGTTTCTTCTTGTTCGGATCTT</canonical_amplicon>
		<polymorphic_amplicon>CAGATTACAAATCGATAGACAAATTACATATGAAATTTGCAACAGTACCGGATTCAGTTGCATTTCCGACCAATTTCAGAAGGTTAGAGCTCGGTTGTCAAGGTTACGATCACTTTAAAAACTTTGGAGAGTGTAAACCAGATCTAGAATAAAAATTTTGCACTCCCAGAATTTTTTGAAAATTCCTAGTTTTTCAGCTATTTGCTGATTTCTGAAGGACACCCTCTTTAGTACGTTTTGTACTGAAAAACTAGAAATTTTCGAAAAATTCTGTGAATGCAAAGTTTTCAATCTAGATCTGTTTTACATCCTCCAAAATTTCCAACCTGATCGGAAACTCAACAATCAAGCACTAGAATCTTGAAAATGACCGATAATCGACTGAAAAACACGTTTTTGTACATAGTACTGTACATCTTCAATTAGAAAATTTCCTAAAACAATTWAAATCATCAGAACACAAGCACTGAATTTTTAGTTTCTTCTTGTTCGGATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36565</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>61410</contig_pos>
        <strand>+</strand>
        <context>ATAGTGATGA[C/T]GGGGTCCCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAAAGATCTAAATCTGCAAACTCTTTTCATAAAGAATGAATAGTGATGA</left_flank>
        <right_flank>GGGGTCCCGACGCTTATGAAAGTCCTAAAAACCAAAACCAGAGTCGCCTG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTAGTTTTTCAGCTATTTGCTGATTTCTGAAGGACACCCTCTTTAGTACGTTTTGTACTGAAAAACTAGAAATTTTCGAAAAATTCTGTGAATGCAAAGTTTTCAATCTAGATCTGTTTTACATCCTCCAAAATTTCCAACCTGATCGGAAACTCAACAATCAAGCACTAGAATCTTGAAAATGACCGATAATCGACTGAAAAACACGTTTTTGTACATAGTACTGTACATCTTCAATTAGAAAATTTCCTAAAACAATTAAAATCATCAGAACACAAGCACTGAATTTTTAGTTTCTTCTTGTTCGGATCTTCAATCCCCGGAAACACCCGAACTGCCTGGAAACACAAAAACTTCCGAGTATCATGTTTTTGTTTCACACAAAAAGGCAAACAATCCGATGAACGGACGTAACTGAACTCTCAGAATCTTATGATGAAAAAAAAAACCAAAGATCTAAATCTGCAAACTCTTTTCATAAAGAATGAATAGTGATGATGGGGTCCCGACGCTTATGAAAGTCCTAAAAACCAAAACCAGAGTCGCCTGACCCGGATTTGACAAATTGGGTTAGGTGCATGAACCTTGGCGCTCCGGAGGGTGTTGCAAAGAATGGGGGTTGCATATGGAATGGGTTCAGGTCATGATATCCTGGCCCAAAAAATGCACTCGTTTCAATATGAAACTGAAAAAATTGCAGTTTAAAGGGACCATAATACGCGTAGATCAATTTAAAACTTTAAAACCTAAAAGAAGCCAAGCTAGAATTTCTACAATTTGAAGTTTGAATAGAATATCGCATTTTACTCAATGTAATGATTGAGGTGGAAAAATAAAATAATCTACCGTAAACATAAATAGTCGCATGTTCTTACCTGGCTCATGTTGTTGCTCATCGTGCTCCGTTTTTGCTGACGTTTTGGCAAAGACACTCAACAACGACTCACTCACACAATTTACTGTCGGATAGTTGGCCAAATGAGAGCGAGAAGGGGCGCA</canonical>
            <polymorphic>CCTAGTTTTTCAGCTATTTGCTGATTTCTGAAGGACACCCTCTTTAGTACGTTTTGTACTGAAAAACTAGAAATTTTCGAAAAATTCTGTGAATGCAAAGTTTTCAATCTAGATCTGTTTTACATCCTCCAAAATTTCCAACCTGATCGGAAACTCAACAATCAAGCACTAGAATCTTGAAAATGACCGATAATCGACTGAAAAACACGTTTTTGTACATAGTACTGTACATCTTCAATTAGAAAATTTCCTAAAACAATTAAAATCATCAGAACACAAGCACTGAATTTTTAGTTTCTTCTTGTTCGGATCTTCAATCCCCGGAAACACCCGAACTGCCTGGAAACACAAAAACTTCCGAGTATCATGTTTTTGTTTCACACAAAAAGGCAAACAATCCGATGAACGGACGTAACTGAACTCTCAGAATCTTATGATGAAAAAAAAAACCAAAGATCTAAATCTGCAAACTCTTTTCATAAAGAATGAATAGTGATGAYGGGGTCCCGACGCTTATGAAAGTCCTAAAAACCAAAACCAGAGTCGCCTGACCCGGATTTGACAAATTGGGTTAGGTGCATGAACCTTGGCGCTCCGGAGGGTGTTGCAAAGAATGGGGGTTGCATATGGAATGGGTTCAGGTCATGATATCCTGGCCCAAAAAATGCACTCGTTTCAATATGAAACTGAAAAAATTGCAGTTTAAAGGGACCATAATACGCGTAGATCAATTTAAAACTTTAAAACCTAAAAGAAGCCAAGCTAGAATTTCTACAATTTGAAGTTTGAATAGAATATCGCATTTTACTCAATGTAATGATTGAGGTGGAAAAATAAAATAATCTACCGTAAACATAAATAGTCGCATGTTCTTACCTGGCTCATGTTGTTGCTCATCGTGCTCCGTTTTTGCTGACGTTTTGGCAAAGACACTCAACAACGACTCACTCACACAATTTACTGTCGGATAGTTGGCCAAATGAGAGCGAGAAGGGGCGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACGTAACTGAACTCTCAGAATC</pcr_primer_p1>
		<pcr_primer_p2>CCAGGATATCATGACCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GACGTAACTGAACTCTCAGAATCTTATGATGAAAAAAAAAACCAAAGATCTAAATCTGCAAACTCTTTTCATAAAGAATGAATAGTGATGATGGGGTCCCGACGCTTATGAAAGTCCTAAAAACCAAAACCAGAGTCGCCTGACCCGGATTTGACAAATTGGGTTAGGTGCATGAACCTTGGCGCTCCGGAGGGTGTTGCAAAGAATGGGGGTTGCATATGGAATGGGTTCAGGTCATGATATCCTGG</canonical_amplicon>
		<polymorphic_amplicon>GACGTAACTGAACTCTCAGAATCTTATGATGAAAAAAAAAACCAAAGATCTAAATCTGCAAACTCTTTTCATAAAGAATGAATAGTGATGAYGGGGTCCCGACGCTTATGAAAGTCCTAAAAACCAAAACCAGAGTCGCCTGACCCGGATTTGACAAATTGGGTTAGGTGCATGAACCTTGGCGCTCCGGAGGGTGTTGCAAAGAATGGGGGTTGCATATGGAATGGGTTCAGGTCATGATATCCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36566</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>61458</contig_pos>
        <strand>+</strand>
        <context>CCAGAGTCGC[A/C]TGACCCGGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATGGGGTCCCGACGCTTATGAAAGTCCTAAAAACCAAAACCAGAGTCGC</left_flank>
        <right_flank>TGACCCGGATTTGACAAATTGGGTTAGGTGCATGAACCTTGGCGCTCCGG</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGTTTTGTACTGAAAAACTAGAAATTTTCGAAAAATTCTGTGAATGCAAAGTTTTCAATCTAGATCTGTTTTACATCCTCCAAAATTTCCAACCTGATCGGAAACTCAACAATCAAGCACTAGAATCTTGAAAATGACCGATAATCGACTGAAAAACACGTTTTTGTACATAGTACTGTACATCTTCAATTAGAAAATTTCCTAAAACAATTAAAATCATCAGAACACAAGCACTGAATTTTTAGTTTCTTCTTGTTCGGATCTTCAATCCCCGGAAACACCCGAACTGCCTGGAAACACAAAAACTTCCGAGTATCATGTTTTTGTTTCACACAAAAAGGCAAACAATCCGATGAACGGACGTAACTGAACTCTCAGAATCTTATGATGAAAAAAAAAACCAAAGATCTAAATCTGCAAACTCTTTTCATAAAGAATGAATAGTGATGATGGGGTCCCGACGCTTATGAAAGTCCTAAAAACCAAAACCAGAGTCGCCTGACCCGGATTTGACAAATTGGGTTAGGTGCATGAACCTTGGCGCTCCGGAGGGTGTTGCAAAGAATGGGGGTTGCATATGGAATGGGTTCAGGTCATGATATCCTGGCCCAAAAAATGCACTCGTTTCAATATGAAACTGAAAAAATTGCAGTTTAAAGGGACCATAATACGCGTAGATCAATTTAAAACTTTAAAACCTAAAAGAAGCCAAGCTAGAATTTCTACAATTTGAAGTTTGAATAGAATATCGCATTTTACTCAATGTAATGATTGAGGTGGAAAAATAAAATAATCTACCGTAAACATAAATAGTCGCATGTTCTTACCTGGCTCATGTTGTTGCTCATCGTGCTCCGTTTTTGCTGACGTTTTGGCAAAGACACTCAACAACGACTCACTCACACAATTTACTGTCGGATAGTTGGCCAAATGAGAGCGAGAAGGGGCGCAACGGAAGCAGGAAGACGGGGAGCACCCCCCGTTTAGTTAGGGCAGTTA</canonical>
            <polymorphic>ACGTTTTGTACTGAAAAACTAGAAATTTTCGAAAAATTCTGTGAATGCAAAGTTTTCAATCTAGATCTGTTTTACATCCTCCAAAATTTCCAACCTGATCGGAAACTCAACAATCAAGCACTAGAATCTTGAAAATGACCGATAATCGACTGAAAAACACGTTTTTGTACATAGTACTGTACATCTTCAATTAGAAAATTTCCTAAAACAATTAAAATCATCAGAACACAAGCACTGAATTTTTAGTTTCTTCTTGTTCGGATCTTCAATCCCCGGAAACACCCGAACTGCCTGGAAACACAAAAACTTCCGAGTATCATGTTTTTGTTTCACACAAAAAGGCAAACAATCCGATGAACGGACGTAACTGAACTCTCAGAATCTTATGATGAAAAAAAAAACCAAAGATCTAAATCTGCAAACTCTTTTCATAAAGAATGAATAGTGATGATGGGGTCCCGACGCTTATGAAAGTCCTAAAAACCAAAACCAGAGTCGCMTGACCCGGATTTGACAAATTGGGTTAGGTGCATGAACCTTGGCGCTCCGGAGGGTGTTGCAAAGAATGGGGGTTGCATATGGAATGGGTTCAGGTCATGATATCCTGGCCCAAAAAATGCACTCGTTTCAATATGAAACTGAAAAAATTGCAGTTTAAAGGGACCATAATACGCGTAGATCAATTTAAAACTTTAAAACCTAAAAGAAGCCAAGCTAGAATTTCTACAATTTGAAGTTTGAATAGAATATCGCATTTTACTCAATGTAATGATTGAGGTGGAAAAATAAAATAATCTACCGTAAACATAAATAGTCGCATGTTCTTACCTGGCTCATGTTGTTGCTCATCGTGCTCCGTTTTTGCTGACGTTTTGGCAAAGACACTCAACAACGACTCACTCACACAATTTACTGTCGGATAGTTGGCCAAATGAGAGCGAGAAGGGGCGCAACGGAAGCAGGAAGACGGGGAGCACCCCCCGTTTAGTTAGGGCAGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTCATAAAGAATGAATAGTGA</pcr_primer_p1>
		<pcr_primer_p2>GTATTATGGTCCCTTTAAACTGC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTCATAAAGAATGAATAGTGATGATGGGGTCCCGACGCTTATGAAAGTCCTAAAAACCAAAACCAGAGTCGCCTGACCCGGATTTGACAAATTGGGTTAGGTGCATGAACCTTGGCGCTCCGGAGGGTGTTGCAAAGAATGGGGGTTGCATATGGAATGGGTTCAGGTCATGATATCCTGGCCCAAAAAATGCACTCGTTTCAATATGAAACTGAAAAAATTGCAGTTTAAAGGGACCATAATAC</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTCATAAAGAATGAATAGTGATGATGGGGTCCCGACGCTTATGAAAGTCCTAAAAACCAAAACCAGAGTCGCMTGACCCGGATTTGACAAATTGGGTTAGGTGCATGAACCTTGGCGCTCCGGAGGGTGTTGCAAAGAATGGGGGTTGCATATGGAATGGGTTCAGGTCATGATATCCTGGCCCAAAAAATGCACTCGTTTCAATATGAAACTGAAAAAATTGCAGTTTAAAGGGACCATAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36567</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>61756</contig_pos>
        <strand>+</strand>
        <context>AAAATAATCT[A/G]CCGTAAACAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATCGCATTTTACTCAATGTAATGATTGAGGTGGAAAAATAAAATAATCT</left_flank>
        <right_flank>CCGTAAACATAAATAGTCGCATGTTCTTACCTGGCTCATGTTGTTGCTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACAAAAACTTCCGAGTATCATGTTTTTGTTTCACACAAAAAGGCAAACAATCCGATGAACGGACGTAACTGAACTCTCAGAATCTTATGATGAAAAAAAAAACCAAAGATCTAAATCTGCAAACTCTTTTCATAAAGAATGAATAGTGATGATGGGGTCCCGACGCTTATGAAAGTCCTAAAAACCAAAACCAGAGTCGCCTGACCCGGATTTGACAAATTGGGTTAGGTGCATGAACCTTGGCGCTCCGGAGGGTGTTGCAAAGAATGGGGGTTGCATATGGAATGGGTTCAGGTCATGATATCCTGGCCCAAAAAATGCACTCGTTTCAATATGAAACTGAAAAAATTGCAGTTTAAAGGGACCATAATACGCGTAGATCAATTTAAAACTTTAAAACCTAAAAGAAGCCAAGCTAGAATTTCTACAATTTGAAGTTTGAATAGAATATCGCATTTTACTCAATGTAATGATTGAGGTGGAAAAATAAAATAATCTACCGTAAACATAAATAGTCGCATGTTCTTACCTGGCTCATGTTGTTGCTCATCGTGCTCCGTTTTTGCTGACGTTTTGGCAAAGACACTCAACAACGACTCACTCACACAATTTACTGTCGGATAGTTGGCCAAATGAGAGCGAGAAGGGGCGCAACGGAAGCAGGAAGACGGGGAGCACCCCCCGTTTAGTTAGGGCAGTTATCTAACGCTTCCGAAAAGTCTATGTGAATGGCAAGCGCCGCCCACTTTTCTCCGTCTTTTTTGGACTTCTTTCTGCTGCTTCTTCTTCTTCTTTTCTTTCAACTGCTCCAGCTTCTTCTGTTAAAACAGAACTTGGGTTGAGTGAGTTGGTTTTCAGATGGCGTAATCAGGAGGGTACAAAAGAAGAGTTTGGGGATTTTTACGCCAGAAAGGTGTCTCTTTTCAATGGAACGTGACTCTTCTTGGCATTTCACAAAAATGAAGGAATGGAAAGATGAAAAAATGAATGAATGAATAA</canonical>
            <polymorphic>CACAAAAACTTCCGAGTATCATGTTTTTGTTTCACACAAAAAGGCAAACAATCCGATGAACGGACGTAACTGAACTCTCAGAATCTTATGATGAAAAAAAAAACCAAAGATCTAAATCTGCAAACTCTTTTCATAAAGAATGAATAGTGATGATGGGGTCCCGACGCTTATGAAAGTCCTAAAAACCAAAACCAGAGTCGCCTGACCCGGATTTGACAAATTGGGTTAGGTGCATGAACCTTGGCGCTCCGGAGGGTGTTGCAAAGAATGGGGGTTGCATATGGAATGGGTTCAGGTCATGATATCCTGGCCCAAAAAATGCACTCGTTTCAATATGAAACTGAAAAAATTGCAGTTTAAAGGGACCATAATACGCGTAGATCAATTTAAAACTTTAAAACCTAAAAGAAGCCAAGCTAGAATTTCTACAATTTGAAGTTTGAATAGAATATCGCATTTTACTCAATGTAATGATTGAGGTGGAAAAATAAAATAATCTRCCGTAAACATAAATAGTCGCATGTTCTTACCTGGCTCATGTTGTTGCTCATCGTGCTCCGTTTTTGCTGACGTTTTGGCAAAGACACTCAACAACGACTCACTCACACAATTTACTGTCGGATAGTTGGCCAAATGAGAGCGAGAAGGGGCGCAACGGAAGCAGGAAGACGGGGAGCACCCCCCGTTTAGTTAGGGCAGTTATCTAACGCTTCCGAAAAGTCTATGTGAATGGCAAGCGCCGCCCACTTTTCTCCGTCTTTTTTGGACTTCTTTCTGCTGCTTCTTCTTCTTCTTTTCTTTCAACTGCTCCAGCTTCTTCTGTTAAAACAGAACTTGGGTTGAGTGAGTTGGTTTTCAGATGGCGTAATCAGGAGGGTACAAAAGAAGAGTTTGGGGATTTTTACGCCAGAAAGGTGTCTCTTTTCAATGGAACGTGACTCTTCTTGGCATTTCACAAAAATGAAGGAATGGAAAGATGAAAAAATGAATGAATGAATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>502 384 114</canonical_bands>
                <polymorphic_bands>616 384</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACGCGTAGATCAATTTAAAAC</pcr_primer_p1>
		<pcr_primer_p2>AGTAAATTGTGTGAGTGAGTCGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATACGCGTAGATCAATTTAAAACTTTAAAACCTAAAAGAAGCCAAGCTAGAATTTCTACAATTTGAAGTTTGAATAGAATATCGCATTTTACTCAATGTAATGATTGAGGTGGAAAAATAAAATAATCTACCGTAAACATAAATAGTCGCATGTTCTTACCTGGCTCATGTTGTTGCTCATCGTGCTCCGTTTTTGCTGACGTTTTGGCAAAGACACTCAACAACGACTCACTCACACAATTTACT</canonical_amplicon>
		<polymorphic_amplicon>ATACGCGTAGATCAATTTAAAACTTTAAAACCTAAAAGAAGCCAAGCTAGAATTTCTACAATTTGAAGTTTGAATAGAATATCGCATTTTACTCAATGTAATGATTGAGGTGGAAAAATAAAATAATCTRCCGTAAACATAAATAGTCGCATGTTCTTACCTGGCTCATGTTGTTGCTCATCGTGCTCCGTTTTTGCTGACGTTTTGGCAAAGACACTCAACAACGACTCACTCACACAATTTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36568</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>62178</contig_pos>
        <strand>+</strand>
        <context>AAGGTGTCTC[A/T]TTTCAATGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAGGGTACAAAAGAAGAGTTTGGGGATTTTTACGCCAGAAAGGTGTCTC</left_flank>
        <right_flank>TTTCAATGGAACGTGACTCTTCTTGGCATTTCACAAAAATGAAGGAATGG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTACAATTTGAAGTTTGAATAGAATATCGCATTTTACTCAATGTAATGATTGAGGTGGAAAAATAAAATAATCTACCGTAAACATAAATAGTCGCATGTTCTTACCTGGCTCATGTTGTTGCTCATCGTGCTCCGTTTTTGCTGACGTTTTGGCAAAGACACTCAACAACGACTCACTCACACAATTTACTGTCGGATAGTTGGCCAAATGAGAGCGAGAAGGGGCGCAACGGAAGCAGGAAGACGGGGAGCACCCCCCGTTTAGTTAGGGCAGTTATCTAACGCTTCCGAAAAGTCTATGTGAATGGCAAGCGCCGCCCACTTTTCTCCGTCTTTTTTGGACTTCTTTCTGCTGCTTCTTCTTCTTCTTTTCTTTCAACTGCTCCAGCTTCTTCTGTTAAAACAGAACTTGGGTTGAGTGAGTTGGTTTTCAGATGGCGTAATCAGGAGGGTACAAAAGAAGAGTTTGGGGATTTTTACGCCAGAAAGGTGTCTCTTTTCAATGGAACGTGACTCTTCTTGGCATTTCACAAAAATGAAGGAATGGAAAGATGAAAAAATGAATGAATGAATAATAATAATAATAATAATAATAATAATAATAACGGGACACCAAAAGCGGGGCGCCCTAAGAGGTGCTTGGGATTGTTGGAGTGAATCCCACAAAACAGAATTTCGAGATAAAGAATAAAAGGGGAGGGGAGGAGAAAAATAATTTGTGGAAGCCAAGAAAAATTGGGCGAAGATGAAGAAGGACGACGACGACGATGAGGATTCAGAAGAATAATCTTTGTCACGAAAATGGAGAGAGAGATGGCGAGAACCAGTAGGCGGGATTAGAGGGATTCTATAGTTTTTGCCGTTGCGGGTCCTCTAGCTCACGGGTGCCCAAAGTTTTATAGACCAACAATGCACCAGTGTAAAGATGATTTGTGCTCAGCTTTGGTTTTAGAGTACGCGACGAGATCAATGTGATGTGTGGGGTCCCGGTGTTGCG</canonical>
            <polymorphic>TTTCTACAATTTGAAGTTTGAATAGAATATCGCATTTTACTCAATGTAATGATTGAGGTGGAAAAATAAAATAATCTACCGTAAACATAAATAGTCGCATGTTCTTACCTGGCTCATGTTGTTGCTCATCGTGCTCCGTTTTTGCTGACGTTTTGGCAAAGACACTCAACAACGACTCACTCACACAATTTACTGTCGGATAGTTGGCCAAATGAGAGCGAGAAGGGGCGCAACGGAAGCAGGAAGACGGGGAGCACCCCCCGTTTAGTTAGGGCAGTTATCTAACGCTTCCGAAAAGTCTATGTGAATGGCAAGCGCCGCCCACTTTTCTCCGTCTTTTTTGGACTTCTTTCTGCTGCTTCTTCTTCTTCTTTTCTTTCAACTGCTCCAGCTTCTTCTGTTAAAACAGAACTTGGGTTGAGTGAGTTGGTTTTCAGATGGCGTAATCAGGAGGGTACAAAAGAAGAGTTTGGGGATTTTTACGCCAGAAAGGTGTCTCWTTTCAATGGAACGTGACTCTTCTTGGCATTTCACAAAAATGAAGGAATGGAAAGATGAAAAAATGAATGAATGAATAATAATAATAATAATAATAATAATAATAATAACGGGACACCAAAAGCGGGGCGCCCTAAGAGGTGCTTGGGATTGTTGGAGTGAATCCCACAAAACAGAATTTCGAGATAAAGAATAAAAGGGGAGGGGAGGAGAAAAATAATTTGTGGAAGCCAAGAAAAATTGGGCGAAGATGAAGAAGGACGACGACGACGATGAGGATTCAGAAGAATAATCTTTGTCACGAAAATGGAGAGAGAGATGGCGAGAACCAGTAGGCGGGATTAGAGGGATTCTATAGTTTTTGCCGTTGCGGGTCCTCTAGCTCACGGGTGCCCAAAGTTTTATAGACCAACAATGCACCAGTGTAAAGATGATTTGTGCTCAGCTTTGGTTTTAGAGTACGCGACGAGATCAATGTGATGTGTGGGGTCCCGGTGTTGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAGGGTACAAAAGAAGAGTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTATTCTTTATCTCGAAATTCTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGGAGGGTACAAAAGAAGAGTTTGGGGATTTTTACGCCAGAAAGGTGTCTCTTTTCAATGGAACGTGACTCTTCTTGGCATTTCACAAAAATGAAGGAATGGAAAGATGAAAAAATGAATGAATGAATAATAATAATAATAATAATAATAATAATAATAACGGGACACCAAAAGCGGGGCGCCCTAAGAGGTGCTTGGGATTGTTGGAGTGAATCCCACAAAACAGAATTTCGAGATAAAGAATAAAA</canonical_amplicon>
		<polymorphic_amplicon>AGGAGGGTACAAAAGAAGAGTTTGGGGATTTTTACGCCAGAAAGGTGTCTCWTTTCAATGGAACGTGACTCTTCTTGGCATTTCACAAAAATGAAGGAATGGAAAGATGAAAAAATGAATGAATGAATAATAATAATAATAATAATAATAATAATAATAACGGGACACCAAAAGCGGGGCGCCCTAAGAGGTGCTTGGGATTGTTGGAGTGAATCCCACAAAACAGAATTTCGAGATAAAGAATAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36569</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>68598</contig_pos>
        <strand>+</strand>
        <context>CTCGAGTTTC[C/T]ATTTCGTTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTCATCTCCTGGCGGTTTCATTTTGTTTTTCTGACGGTCTCGAGTTTC</left_flank>
        <right_flank>ATTTCGTTCATTCTTCCCAATCCGTCAGATATCTAAAATCTAAAGAATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTCGTTCGTTCCTCATTTTTATGTGGTGCACTCTTTGGAAAAGCGAACTTATGAGATTTTCGAGTGAAAGGGAATCCATCCCGAATGTGTGGATGTACGAGGCGCCCCCGGTGAGAAGCAATAGAAGCGAAATGCCCCCCACACACGTACTGTCACTCTCGTTTGACCGGCAATAGGCCCGATTGAATGTACGCGCTTTCACGAATTTCAAGGTCTGACCCACAAAATTTCGTTTCGCCCTCCCCCTCCCATGCATCTTTCACCCAATTTTGCTTTTGCGCCAATATCCGCGCGAATCGGCCGGCGGAAAACGCGGCGCGCGCTTCGCATCCATTCCGGCTTACCATCATCTCGATTGTTGTGTGTGTTTCGGAATGAGATGACCTACCGACCTACAGTTCAACTTTCTCATTTTGTACTTTCATGAAATTATCCCCCTCCCCTCCAATTCATCTCCTGGCGGTTTCATTTTGTTTTTCTGACGGTCTCGAGTTTCCATTTCGTTCATTCTTCCCAATCCGTCAGATATCTAAAATCTAAAGAATGAAATGAGAACGTATTAGCGTTGTTTTGGATCATCTGAGAATCCATTAGACTTTCGTAAAACATTTAGTATCTGTCTATTTTCCAGTTTTGACGGCTATCGTCCAGCTACCGTACCCTTTTATGTCAAAAGATGTCTGTTTCAGAATAATTTGTTATAATATCAATTTACTCTTCAAACTTTTAACTTTACAATATTCGGAATAATAATGCCAATATGTAAAATCATACATTTTCGAAAATTGTCGCTACAGTATACCTTCATGCCTAGAGTTTTTTGTTTCAGCTTTATGAAATTGTTGGGAGCGGTTATTTTTTTTCTCGGAGGCATGAGAGCGAACTACTATACTACTTGAGCCTAATTTGAATATCATTTTCTCAATTTGATTGTTTTTTTCTATGTTTTTTCTCATTTCAATATGATTTACAACAAAAAATGAAACAATTTTAAAAA</canonical>
            <polymorphic>CTTTTCGTTCGTTCCTCATTTTTATGTGGTGCACTCTTTGGAAAAGCGAACTTATGAGATTTTCGAGTGAAAGGGAATCCATCCCGAATGTGTGGATGTACGAGGCGCCCCCGGTGAGAAGCAATAGAAGCGAAATGCCCCCCACACACGTACTGTCACTCTCGTTTGACCGGCAATAGGCCCGATTGAATGTACGCGCTTTCACGAATTTCAAGGTCTGACCCACAAAATTTCGTTTCGCCCTCCCCCTCCCATGCATCTTTCACCCAATTTTGCTTTTGCGCCAATATCCGCGCGAATCGGCCGGCGGAAAACGCGGCGCGCGCTTCGCATCCATTCCGGCTTACCATCATCTCGATTGTTGTGTGTGTTTCGGAATGAGATGACCTACCGACCTACAGTTCAACTTTCTCATTTTGTACTTTCATGAAATTATCCCCCTCCCCTCCAATTCATCTCCTGGCGGTTTCATTTTGTTTTTCTGACGGTCTCGAGTTTCYATTTCGTTCATTCTTCCCAATCCGTCAGATATCTAAAATCTAAAGAATGAAATGAGAACGTATTAGCGTTGTTTTGGATCATCTGAGAATCCATTAGACTTTCGTAAAACATTTAGTATCTGTCTATTTTCCAGTTTTGACGGCTATCGTCCAGCTACCGTACCCTTTTATGTCAAAAGATGTCTGTTTCAGAATAATTTGTTATAATATCAATTTACTCTTCAAACTTTTAACTTTACAATATTCGGAATAATAATGCCAATATGTAAAATCATACATTTTCGAAAATTGTCGCTACAGTATACCTTCATGCCTAGAGTTTTTTGTTTCAGCTTTATGAAATTGTTGGGAGCGGTTATTTTTTTTCTCGGAGGCATGAGAGCGAACTACTATACTACTTGAGCCTAATTTGAATATCATTTTCTCAATTTGATTGTTTTTTTCTATGTTTTTTCTCATTTCAATATGATTTACAACAAAAAATGAAACAATTTTAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTCGATTGTTGTGTGTGTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTCTAATGGATTCTCAGATGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTCGATTGTTGTGTGTGTTTCGGAATGAGATGACCTACCGACCTACAGTTCAACTTTCTCATTTTGTACTTTCATGAAATTATCCCCCTCCCCTCCAATTCATCTCCTGGCGGTTTCATTTTGTTTTTCTGACGGTCTCGAGTTTCCATTTCGTTCATTCTTCCCAATCCGTCAGATATCTAAAATCTAAAGAATGAAATGAGAACGTATTAGCGTTGTTTTGGATCATCTGAGAATCCATTAGACTT</canonical_amplicon>
		<polymorphic_amplicon>ATCTCGATTGTTGTGTGTGTTTCGGAATGAGATGACCTACCGACCTACAGTTCAACTTTCTCATTTTGTACTTTCATGAAATTATCCCCCTCCCCTCCAATTCATCTCCTGGCGGTTTCATTTTGTTTTTCTGACGGTCTCGAGTTTCYATTTCGTTCATTCTTCCCAATCCGTCAGATATCTAAAATCTAAAGAATGAAATGAGAACGTATTAGCGTTGTTTTGGATCATCTGAGAATCCATTAGACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36570</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>68659</contig_pos>
        <strand>+</strand>
        <context>AATGAGAACG[C/T]ATTAGCGTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTTCCCAATCCGTCAGATATCTAAAATCTAAAGAATGAAATGAGAACG</left_flank>
        <right_flank>ATTAGCGTTGTTTTGGATCATCTGAGAATCCATTAGACTTTCGTAAAACA</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGAGTGAAAGGGAATCCATCCCGAATGTGTGGATGTACGAGGCGCCCCCGGTGAGAAGCAATAGAAGCGAAATGCCCCCCACACACGTACTGTCACTCTCGTTTGACCGGCAATAGGCCCGATTGAATGTACGCGCTTTCACGAATTTCAAGGTCTGACCCACAAAATTTCGTTTCGCCCTCCCCCTCCCATGCATCTTTCACCCAATTTTGCTTTTGCGCCAATATCCGCGCGAATCGGCCGGCGGAAAACGCGGCGCGCGCTTCGCATCCATTCCGGCTTACCATCATCTCGATTGTTGTGTGTGTTTCGGAATGAGATGACCTACCGACCTACAGTTCAACTTTCTCATTTTGTACTTTCATGAAATTATCCCCCTCCCCTCCAATTCATCTCCTGGCGGTTTCATTTTGTTTTTCTGACGGTCTCGAGTTTCCATTTCGTTCATTCTTCCCAATCCGTCAGATATCTAAAATCTAAAGAATGAAATGAGAACGTATTAGCGTTGTTTTGGATCATCTGAGAATCCATTAGACTTTCGTAAAACATTTAGTATCTGTCTATTTTCCAGTTTTGACGGCTATCGTCCAGCTACCGTACCCTTTTATGTCAAAAGATGTCTGTTTCAGAATAATTTGTTATAATATCAATTTACTCTTCAAACTTTTAACTTTACAATATTCGGAATAATAATGCCAATATGTAAAATCATACATTTTCGAAAATTGTCGCTACAGTATACCTTCATGCCTAGAGTTTTTTGTTTCAGCTTTATGAAATTGTTGGGAGCGGTTATTTTTTTTCTCGGAGGCATGAGAGCGAACTACTATACTACTTGAGCCTAATTTGAATATCATTTTCTCAATTTGATTGTTTTTTTCTATGTTTTTTCTCATTTCAATATGATTTACAACAAAAAATGAAACAATTTTAAAAATAGGCTCGAAGAATACGGTAGTTTGCTCTTGCTCCTTAAAGAAAAGTTTTAATAGTTTTAT</canonical>
            <polymorphic>TTCGAGTGAAAGGGAATCCATCCCGAATGTGTGGATGTACGAGGCGCCCCCGGTGAGAAGCAATAGAAGCGAAATGCCCCCCACACACGTACTGTCACTCTCGTTTGACCGGCAATAGGCCCGATTGAATGTACGCGCTTTCACGAATTTCAAGGTCTGACCCACAAAATTTCGTTTCGCCCTCCCCCTCCCATGCATCTTTCACCCAATTTTGCTTTTGCGCCAATATCCGCGCGAATCGGCCGGCGGAAAACGCGGCGCGCGCTTCGCATCCATTCCGGCTTACCATCATCTCGATTGTTGTGTGTGTTTCGGAATGAGATGACCTACCGACCTACAGTTCAACTTTCTCATTTTGTACTTTCATGAAATTATCCCCCTCCCCTCCAATTCATCTCCTGGCGGTTTCATTTTGTTTTTCTGACGGTCTCGAGTTTCCATTTCGTTCATTCTTCCCAATCCGTCAGATATCTAAAATCTAAAGAATGAAATGAGAACGYATTAGCGTTGTTTTGGATCATCTGAGAATCCATTAGACTTTCGTAAAACATTTAGTATCTGTCTATTTTCCAGTTTTGACGGCTATCGTCCAGCTACCGTACCCTTTTATGTCAAAAGATGTCTGTTTCAGAATAATTTGTTATAATATCAATTTACTCTTCAAACTTTTAACTTTACAATATTCGGAATAATAATGCCAATATGTAAAATCATACATTTTCGAAAATTGTCGCTACAGTATACCTTCATGCCTAGAGTTTTTTGTTTCAGCTTTATGAAATTGTTGGGAGCGGTTATTTTTTTTCTCGGAGGCATGAGAGCGAACTACTATACTACTTGAGCCTAATTTGAATATCATTTTCTCAATTTGATTGTTTTTTTCTATGTTTTTTCTCATTTCAATATGATTTACAACAAAAAATGAAACAATTTTAAAAATAGGCTCGAAGAATACGGTAGTTTGCTCTTGCTCCTTAAAGAAAAGTTTTAATAGTTTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>503 410 87</canonical_bands>
                <polymorphic_bands>913 87</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACCTACAGTTCAACTTTCTCAT</pcr_primer_p1>
		<pcr_primer_p2>CCGTCAAAACTGGAAAATAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GACCTACAGTTCAACTTTCTCATTTTGTACTTTCATGAAATTATCCCCCTCCCCTCCAATTCATCTCCTGGCGGTTTCATTTTGTTTTTCTGACGGTCTCGAGTTTCCATTTCGTTCATTCTTCCCAATCCGTCAGATATCTAAAATCTAAAGAATGAAATGAGAACGTATTAGCGTTGTTTTGGATCATCTGAGAATCCATTAGACTTTCGTAAAACATTTAGTATCTGTCTATTTTCCAGTTTTGACGG</canonical_amplicon>
		<polymorphic_amplicon>GACCTACAGTTCAACTTTCTCATTTTGTACTTTCATGAAATTATCCCCCTCCCCTCCAATTCATCTCCTGGCGGTTTCATTTTGTTTTTCTGACGGTCTCGAGTTTCCATTTCGTTCATTCTTCCCAATCCGTCAGATATCTAAAATCTAAAGAATGAAATGAGAACGYATTAGCGTTGTTTTGGATCATCTGAGAATCCATTAGACTTTCGTAAAACATTTAGTATCTGTCTATTTTCCAGTTTTGACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36571</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>68720</contig_pos>
        <strand>+</strand>
        <context>TTTAGTATCT[C/G]TCTATTTTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTGGATCATCTGAGAATCCATTAGACTTTCGTAAAACATTTAGTATCT</left_flank>
        <right_flank>TCTATTTTCCAGTTTTGACGGCTATCGTCCAGCTACCGTACCCTTTTATG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAGAAGCGAAATGCCCCCCACACACGTACTGTCACTCTCGTTTGACCGGCAATAGGCCCGATTGAATGTACGCGCTTTCACGAATTTCAAGGTCTGACCCACAAAATTTCGTTTCGCCCTCCCCCTCCCATGCATCTTTCACCCAATTTTGCTTTTGCGCCAATATCCGCGCGAATCGGCCGGCGGAAAACGCGGCGCGCGCTTCGCATCCATTCCGGCTTACCATCATCTCGATTGTTGTGTGTGTTTCGGAATGAGATGACCTACCGACCTACAGTTCAACTTTCTCATTTTGTACTTTCATGAAATTATCCCCCTCCCCTCCAATTCATCTCCTGGCGGTTTCATTTTGTTTTTCTGACGGTCTCGAGTTTCCATTTCGTTCATTCTTCCCAATCCGTCAGATATCTAAAATCTAAAGAATGAAATGAGAACGTATTAGCGTTGTTTTGGATCATCTGAGAATCCATTAGACTTTCGTAAAACATTTAGTATCTGTCTATTTTCCAGTTTTGACGGCTATCGTCCAGCTACCGTACCCTTTTATGTCAAAAGATGTCTGTTTCAGAATAATTTGTTATAATATCAATTTACTCTTCAAACTTTTAACTTTACAATATTCGGAATAATAATGCCAATATGTAAAATCATACATTTTCGAAAATTGTCGCTACAGTATACCTTCATGCCTAGAGTTTTTTGTTTCAGCTTTATGAAATTGTTGGGAGCGGTTATTTTTTTTCTCGGAGGCATGAGAGCGAACTACTATACTACTTGAGCCTAATTTGAATATCATTTTCTCAATTTGATTGTTTTTTTCTATGTTTTTTCTCATTTCAATATGATTTACAACAAAAAATGAAACAATTTTAAAAATAGGCTCGAAGAATACGGTAGTTTGCTCTTGCTCCTTAAAGAAAAGTTTTAATAGTTTTATTCACTCTCACACTTTTATTTCTCAAAAAAAACGAGAATAATTACAACTGATACTTCAAATT</canonical>
            <polymorphic>AATAGAAGCGAAATGCCCCCCACACACGTACTGTCACTCTCGTTTGACCGGCAATAGGCCCGATTGAATGTACGCGCTTTCACGAATTTCAAGGTCTGACCCACAAAATTTCGTTTCGCCCTCCCCCTCCCATGCATCTTTCACCCAATTTTGCTTTTGCGCCAATATCCGCGCGAATCGGCCGGCGGAAAACGCGGCGCGCGCTTCGCATCCATTCCGGCTTACCATCATCTCGATTGTTGTGTGTGTTTCGGAATGAGATGACCTACCGACCTACAGTTCAACTTTCTCATTTTGTACTTTCATGAAATTATCCCCCTCCCCTCCAATTCATCTCCTGGCGGTTTCATTTTGTTTTTCTGACGGTCTCGAGTTTCCATTTCGTTCATTCTTCCCAATCCGTCAGATATCTAAAATCTAAAGAATGAAATGAGAACGTATTAGCGTTGTTTTGGATCATCTGAGAATCCATTAGACTTTCGTAAAACATTTAGTATCTSTCTATTTTCCAGTTTTGACGGCTATCGTCCAGCTACCGTACCCTTTTATGTCAAAAGATGTCTGTTTCAGAATAATTTGTTATAATATCAATTTACTCTTCAAACTTTTAACTTTACAATATTCGGAATAATAATGCCAATATGTAAAATCATACATTTTCGAAAATTGTCGCTACAGTATACCTTCATGCCTAGAGTTTTTTGTTTCAGCTTTATGAAATTGTTGGGAGCGGTTATTTTTTTTCTCGGAGGCATGAGAGCGAACTACTATACTACTTGAGCCTAATTTGAATATCATTTTCTCAATTTGATTGTTTTTTTCTATGTTTTTTCTCATTTCAATATGATTTACAACAAAAAATGAAACAATTTTAAAAATAGGCTCGAAGAATACGGTAGTTTGCTCTTGCTCCTTAAAGAAAAGTTTTAATAGTTTTATTCACTCTCACACTTTTATTTCTCAAAAAAAACGAGAATAATTACAACTGATACTTCAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTTCATTTTGTTTTTCTGAC</pcr_primer_p1>
		<pcr_primer_p2>TGAAACAGACATCTTTTGACATA</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>GGTTTCATTTTGTTTTTCTGACGGTCTCGAGTTTCCATTTCGTTCATTCTTCCCAATCCGTCAGATATCTAAAATCTAAAGAATGAAATGAGAACGTATTAGCGTTGTTTTGGATCATCTGAGAATCCATTAGACTTTCGTAAAACATTTAGTATCTGTCTATTTTCCAGTTTTGACGGCTATCGTCCAGCTACCGTACCCTTTTATGTCAAAAGATGTCTGTTTCA</canonical_amplicon>
		<polymorphic_amplicon>GGTTTCATTTTGTTTTTCTGACGGTCTCGAGTTTCCATTTCGTTCATTCTTCCCAATCCGTCAGATATCTAAAATCTAAAGAATGAAATGAGAACGTATTAGCGTTGTTTTGGATCATCTGAGAATCCATTAGACTTTCGTAAAACATTTAGTATCTSTCTATTTTCCAGTTTTGACGGCTATCGTCCAGCTACCGTACCCTTTTATGTCAAAAGATGTCTGTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36572</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>68763</contig_pos>
        <strand>+</strand>
        <context>CTACCGTACC[C/G]TTTTATGTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGTATCTGTCTATTTTCCAGTTTTGACGGCTATCGTCCAGCTACCGTACC</left_flank>
        <right_flank>TTTTATGTCAAAAGATGTCTGTTTCAGAATAATTTGTTATAATATCAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGACCGGCAATAGGCCCGATTGAATGTACGCGCTTTCACGAATTTCAAGGTCTGACCCACAAAATTTCGTTTCGCCCTCCCCCTCCCATGCATCTTTCACCCAATTTTGCTTTTGCGCCAATATCCGCGCGAATCGGCCGGCGGAAAACGCGGCGCGCGCTTCGCATCCATTCCGGCTTACCATCATCTCGATTGTTGTGTGTGTTTCGGAATGAGATGACCTACCGACCTACAGTTCAACTTTCTCATTTTGTACTTTCATGAAATTATCCCCCTCCCCTCCAATTCATCTCCTGGCGGTTTCATTTTGTTTTTCTGACGGTCTCGAGTTTCCATTTCGTTCATTCTTCCCAATCCGTCAGATATCTAAAATCTAAAGAATGAAATGAGAACGTATTAGCGTTGTTTTGGATCATCTGAGAATCCATTAGACTTTCGTAAAACATTTAGTATCTGTCTATTTTCCAGTTTTGACGGCTATCGTCCAGCTACCGTACCCTTTTATGTCAAAAGATGTCTGTTTCAGAATAATTTGTTATAATATCAATTTACTCTTCAAACTTTTAACTTTACAATATTCGGAATAATAATGCCAATATGTAAAATCATACATTTTCGAAAATTGTCGCTACAGTATACCTTCATGCCTAGAGTTTTTTGTTTCAGCTTTATGAAATTGTTGGGAGCGGTTATTTTTTTTCTCGGAGGCATGAGAGCGAACTACTATACTACTTGAGCCTAATTTGAATATCATTTTCTCAATTTGATTGTTTTTTTCTATGTTTTTTCTCATTTCAATATGATTTACAACAAAAAATGAAACAATTTTAAAAATAGGCTCGAAGAATACGGTAGTTTGCTCTTGCTCCTTAAAGAAAAGTTTTAATAGTTTTATTCACTCTCACACTTTTATTTCTCAAAAAAAACGAGAATAATTACAACTGATACTTCAAATTTTGAATAATTCAAAATTTAAATTTTCAAATTTTTCAAAAATTA</canonical>
            <polymorphic>TTGACCGGCAATAGGCCCGATTGAATGTACGCGCTTTCACGAATTTCAAGGTCTGACCCACAAAATTTCGTTTCGCCCTCCCCCTCCCATGCATCTTTCACCCAATTTTGCTTTTGCGCCAATATCCGCGCGAATCGGCCGGCGGAAAACGCGGCGCGCGCTTCGCATCCATTCCGGCTTACCATCATCTCGATTGTTGTGTGTGTTTCGGAATGAGATGACCTACCGACCTACAGTTCAACTTTCTCATTTTGTACTTTCATGAAATTATCCCCCTCCCCTCCAATTCATCTCCTGGCGGTTTCATTTTGTTTTTCTGACGGTCTCGAGTTTCCATTTCGTTCATTCTTCCCAATCCGTCAGATATCTAAAATCTAAAGAATGAAATGAGAACGTATTAGCGTTGTTTTGGATCATCTGAGAATCCATTAGACTTTCGTAAAACATTTAGTATCTGTCTATTTTCCAGTTTTGACGGCTATCGTCCAGCTACCGTACCSTTTTATGTCAAAAGATGTCTGTTTCAGAATAATTTGTTATAATATCAATTTACTCTTCAAACTTTTAACTTTACAATATTCGGAATAATAATGCCAATATGTAAAATCATACATTTTCGAAAATTGTCGCTACAGTATACCTTCATGCCTAGAGTTTTTTGTTTCAGCTTTATGAAATTGTTGGGAGCGGTTATTTTTTTTCTCGGAGGCATGAGAGCGAACTACTATACTACTTGAGCCTAATTTGAATATCATTTTCTCAATTTGATTGTTTTTTTCTATGTTTTTTCTCATTTCAATATGATTTACAACAAAAAATGAAACAATTTTAAAAATAGGCTCGAAGAATACGGTAGTTTGCTCTTGCTCCTTAAAGAAAAGTTTTAATAGTTTTATTCACTCTCACACTTTTATTTCTCAAAAAAAACGAGAATAATTACAACTGATACTTCAAATTTTGAATAATTCAAAATTTAAATTTTCAAATTTTTCAAAAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATTAGACTTTCGTAAAACATT</pcr_primer_p1>
		<pcr_primer_p2>ATTTCATAAAGCTGAAACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CCATTAGACTTTCGTAAAACATTTAGTATCTGTCTATTTTCCAGTTTTGACGGCTATCGTCCAGCTACCGTACCCTTTTATGTCAAAAGATGTCTGTTTCAGAATAATTTGTTATAATATCAATTTACTCTTCAAACTTTTAACTTTACAATATTCGGAATAATAATGCCAATATGTAAAATCATACATTTTCGAAAATTGTCGCTACAGTATACCTTCATGCCTAGAGTTTTTTGTTTCAGCTTTATGAAAT</canonical_amplicon>
		<polymorphic_amplicon>CCATTAGACTTTCGTAAAACATTTAGTATCTGTCTATTTTCCAGTTTTGACGGCTATCGTCCAGCTACCGTACCSTTTTATGTCAAAAGATGTCTGTTTCAGAATAATTTGTTATAATATCAATTTACTCTTCAAACTTTTAACTTTACAATATTCGGAATAATAATGCCAATATGTAAAATCATACATTTTCGAAAATTGTCGCTACAGTATACCTTCATGCCTAGAGTTTTTTGTTTCAGCTTTATGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36573</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>68796</contig_pos>
        <strand>+</strand>
        <context>TTCAGAATAA[C/T]TTGTTATAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTCCAGCTACCGTACCCTTTTATGTCAAAAGATGTCTGTTTCAGAATAA</left_flank>
        <right_flank>TTGTTATAATATCAATTTACTCTTCAAACTTTTAACTTTACAATATTCGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTCACGAATTTCAAGGTCTGACCCACAAAATTTCGTTTCGCCCTCCCCCTCCCATGCATCTTTCACCCAATTTTGCTTTTGCGCCAATATCCGCGCGAATCGGCCGGCGGAAAACGCGGCGCGCGCTTCGCATCCATTCCGGCTTACCATCATCTCGATTGTTGTGTGTGTTTCGGAATGAGATGACCTACCGACCTACAGTTCAACTTTCTCATTTTGTACTTTCATGAAATTATCCCCCTCCCCTCCAATTCATCTCCTGGCGGTTTCATTTTGTTTTTCTGACGGTCTCGAGTTTCCATTTCGTTCATTCTTCCCAATCCGTCAGATATCTAAAATCTAAAGAATGAAATGAGAACGTATTAGCGTTGTTTTGGATCATCTGAGAATCCATTAGACTTTCGTAAAACATTTAGTATCTGTCTATTTTCCAGTTTTGACGGCTATCGTCCAGCTACCGTACCCTTTTATGTCAAAAGATGTCTGTTTCAGAATAATTTGTTATAATATCAATTTACTCTTCAAACTTTTAACTTTACAATATTCGGAATAATAATGCCAATATGTAAAATCATACATTTTCGAAAATTGTCGCTACAGTATACCTTCATGCCTAGAGTTTTTTGTTTCAGCTTTATGAAATTGTTGGGAGCGGTTATTTTTTTTCTCGGAGGCATGAGAGCGAACTACTATACTACTTGAGCCTAATTTGAATATCATTTTCTCAATTTGATTGTTTTTTTCTATGTTTTTTCTCATTTCAATATGATTTACAACAAAAAATGAAACAATTTTAAAAATAGGCTCGAAGAATACGGTAGTTTGCTCTTGCTCCTTAAAGAAAAGTTTTAATAGTTTTATTCACTCTCACACTTTTATTTCTCAAAAAAAACGAGAATAATTACAACTGATACTTCAAATTTTGAATAATTCAAAATTTAAATTTTCAAATTTTTCAAAAATTATCGCTGATTGGTTATTTTTATAAACCGATAATT</canonical>
            <polymorphic>CTTTCACGAATTTCAAGGTCTGACCCACAAAATTTCGTTTCGCCCTCCCCCTCCCATGCATCTTTCACCCAATTTTGCTTTTGCGCCAATATCCGCGCGAATCGGCCGGCGGAAAACGCGGCGCGCGCTTCGCATCCATTCCGGCTTACCATCATCTCGATTGTTGTGTGTGTTTCGGAATGAGATGACCTACCGACCTACAGTTCAACTTTCTCATTTTGTACTTTCATGAAATTATCCCCCTCCCCTCCAATTCATCTCCTGGCGGTTTCATTTTGTTTTTCTGACGGTCTCGAGTTTCCATTTCGTTCATTCTTCCCAATCCGTCAGATATCTAAAATCTAAAGAATGAAATGAGAACGTATTAGCGTTGTTTTGGATCATCTGAGAATCCATTAGACTTTCGTAAAACATTTAGTATCTGTCTATTTTCCAGTTTTGACGGCTATCGTCCAGCTACCGTACCCTTTTATGTCAAAAGATGTCTGTTTCAGAATAAYTTGTTATAATATCAATTTACTCTTCAAACTTTTAACTTTACAATATTCGGAATAATAATGCCAATATGTAAAATCATACATTTTCGAAAATTGTCGCTACAGTATACCTTCATGCCTAGAGTTTTTTGTTTCAGCTTTATGAAATTGTTGGGAGCGGTTATTTTTTTTCTCGGAGGCATGAGAGCGAACTACTATACTACTTGAGCCTAATTTGAATATCATTTTCTCAATTTGATTGTTTTTTTCTATGTTTTTTCTCATTTCAATATGATTTACAACAAAAAATGAAACAATTTTAAAAATAGGCTCGAAGAATACGGTAGTTTGCTCTTGCTCCTTAAAGAAAAGTTTTAATAGTTTTATTCACTCTCACACTTTTATTTCTCAAAAAAAACGAGAATAATTACAACTGATACTTCAAATTTTGAATAATTCAAAATTTAAATTTTCAAATTTTTCAAAAATTATCGCTGATTGGTTATTTTTATAAACCGATAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>246 162 110 75 66 63 54 40 34 22 20 19 19 16 11 10 8 8 7 6 4</canonical_bands>
                <polymorphic_bands>262 162 110 75 66 63 54 40 34 22 20 19 19 11 10 8 8 7 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATTAGACTTTCGTAAAACATT</pcr_primer_p1>
		<pcr_primer_p2>ATTTCATAAAGCTGAAACAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CCATTAGACTTTCGTAAAACATTTAGTATCTGTCTATTTTCCAGTTTTGACGGCTATCGTCCAGCTACCGTACCCTTTTATGTCAAAAGATGTCTGTTTCAGAATAATTTGTTATAATATCAATTTACTCTTCAAACTTTTAACTTTACAATATTCGGAATAATAATGCCAATATGTAAAATCATACATTTTCGAAAATTGTCGCTACAGTATACCTTCATGCCTAGAGTTTTTTGTTTCAGCTTTATGAAAT</canonical_amplicon>
		<polymorphic_amplicon>CCATTAGACTTTCGTAAAACATTTAGTATCTGTCTATTTTCCAGTTTTGACGGCTATCGTCCAGCTACCGTACCCTTTTATGTCAAAAGATGTCTGTTTCAGAATAAYTTGTTATAATATCAATTTACTCTTCAAACTTTTAACTTTACAATATTCGGAATAATAATGCCAATATGTAAAATCATACATTTTCGAAAATTGTCGCTACAGTATACCTTCATGCCTAGAGTTTTTTGTTTCAGCTTTATGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36574</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>68901</contig_pos>
        <strand>+</strand>
        <context>CGCTACAGTA[A/T]WCCTTCATGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATAATGCCAATATGTAAAATCATACATTTTCGAAAATTGTCGCTACAGTA</left_flank>
        <right_flank>ACCTTCATGCCTAGAGTTTTTTGTTTCAGCTTTATGAAATTGTTGGGAGC</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGGCGGAAAACGCGGCGCGCGCTTCGCATCCATTCCGGCTTACCATCATCTCGATTGTTGTGTGTGTTTCGGAATGAGATGACCTACCGACCTACAGTTCAACTTTCTCATTTTGTACTTTCATGAAATTATCCCCCTCCCCTCCAATTCATCTCCTGGCGGTTTCATTTTGTTTTTCTGACGGTCTCGAGTTTCCATTTCGTTCATTCTTCCCAATCCGTCAGATATCTAAAATCTAAAGAATGAAATGAGAACGTATTAGCGTTGTTTTGGATCATCTGAGAATCCATTAGACTTTCGTAAAACATTTAGTATCTGTCTATTTTCCAGTTTTGACGGCTATCGTCCAGCTACCGTACCCTTTTATGTCAAAAGATGTCTGTTTCAGAATAATTTGTTATAATATCAATTTACTCTTCAAACTTTTAACTTTACAATATTCGGAATAATAATGCCAATATGTAAAATCATACATTTTCGAAAATTGTCGCTACAGTATACCTTCATGCCTAGAGTTTTTTGTTTCAGCTTTATGAAATTGTTGGGAGCGGTTATTTTTTTTCTCGGAGGCATGAGAGCGAACTACTATACTACTTGAGCCTAATTTGAATATCATTTTCTCAATTTGATTGTTTTTTTCTATGTTTTTTCTCATTTCAATATGATTTACAACAAAAAATGAAACAATTTTAAAAATAGGCTCGAAGAATACGGTAGTTTGCTCTTGCTCCTTAAAGAAAAGTTTTAATAGTTTTATTCACTCTCACACTTTTATTTCTCAAAAAAAACGAGAATAATTACAACTGATACTTCAAATTTTGAATAATTCAAAATTTAAATTTTCAAATTTTTCAAAAATTATCGCTGATTGGTTATTTTTATAAACCGATAATTTTTATAATTTATTTTTCATATCAGTTTTTGTTAAGATAAATATGCCAATGCTTTTTTTTGCCTGACCCGTATTTCGAATACCGCGCGGTACTGTACCGAGTAGCA</canonical>
            <polymorphic>CCGGCGGAAAACGCGGCGCGCGCTTCGCATCCATTCCGGCTTACCATCATCTCGATTGTTGTGTGTGTTTCGGAATGAGATGACCTACCGACCTACAGTTCAACTTTCTCATTTTGTACTTTCATGAAATTATCCCCCTCCCCTCCAATTCATCTCCTGGCGGTTTCATTTTGTTTTTCTGACGGTCTCGAGTTTCCATTTCGTTCATTCTTCCCAATCCGTCAGATATCTAAAATCTAAAGAATGAAATGAGAACGTATTAGCGTTGTTTTGGATCATCTGAGAATCCATTAGACTTTCGTAAAACATTTAGTATCTGTCTATTTTCCAGTTTTGACGGCTATCGTCCAGCTACCGTACCCTTTTATGTCAAAAGATGTCTGTTTCAGAATAATTTGTTATAATATCAATTTACTCTTCAAACTTTTAACTTTACAATATTCGGAATAATAATGCCAATATGTAAAATCATACATTTTCGAAAATTGTCGCTACAGTAWACCTTCATGCCTAGAGTTTTTTGTTTCAGCTTTATGAAATTGTTGGGAGCGGTTATTTTTTTTCTCGGAGGCATGAGAGCGAACTACTATACTACTTGAGCCTAATTTGAATATCATTTTCTCAATTTGATTGTTTTTTTCTATGTTTTTTCTCATTTCAATATGATTTACAACAAAAAATGAAACAATTTTAAAAATAGGCTCGAAGAATACGGTAGTTTGCTCTTGCTCCTTAAAGAAAAGTTTTAATAGTTTTATTCACTCTCACACTTTTATTTCTCAAAAAAAACGAGAATAATTACAACTGATACTTCAAATTTTGAATAATTCAAAATTTAAATTTTCAAATTTTTCAAAAATTATCGCTGATTGGTTATTTTTATAAACCGATAATTTTTATAATTTATTTTTCATATCAGTTTTTGTTAAGATAAATATGCCAATGCTTTTTTTTGCCTGACCCGTATTTCGAATACCGCGCGGTACTGTACCGAGTAGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTATAC</site>
                <isoschizomers>
                    <enzyme>BssNAI</enzyme>
                    <enzyme>Bst1107I</enzyme>
                    <enzyme>BstZ17I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAAAGATGTCTGTTTCAGAATA</pcr_primer_p1>
		<pcr_primer_p2>AATGATATTCAAATTAGGCTCAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCAAAAGATGTCTGTTTCAGAATAATTTGTTATAATATCAATTTACTCTTCAAACTTTTAACTTTACAATATTCGGAATAATAATGCCAATATGTAAAATCATACATTTTCGAAAATTGTCGCTACAGTATACCTTCATGCCTAGAGTTTTTTGTTTCAGCTTTATGAAATTGTTGGGAGCGGTTATTTTTTTTCTCGGAGGCATGAGAGCGAACTACTATACTACTTGAGCCTAATTTGAATATCATT</canonical_amplicon>
		<polymorphic_amplicon>TCAAAAGATGTCTGTTTCAGAATAATTTGTTATAATATCAATTTACTCTTCAAACTTTTAACTTTACAATATTCGGAATAATAATGCCAATATGTAAAATCATACATTTTCGAAAATTGTCGCTACAGTAWACCTTCATGCCTAGAGTTTTTTGTTTCAGCTTTATGAAATTGTTGGGAGCGGTTATTTTTTTTCTCGGAGGCATGAGAGCGAACTACTATACTACTTGAGCCTAATTTGAATATCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36575</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>68902</contig_pos>
        <strand>+</strand>
        <context>GCTACAGTAW[A/T]CCTTCATGCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAATGCCAATATGTAAAATCATACATTTTCGAAAATTGTCGCTACAGTAT</left_flank>
        <right_flank>CCTTCATGCCTAGAGTTTTTTGTTTCAGCTTTATGAAATTGTTGGGAGCG</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGCGGAAAACGCGGCGCGCGCTTCGCATCCATTCCGGCTTACCATCATCTCGATTGTTGTGTGTGTTTCGGAATGAGATGACCTACCGACCTACAGTTCAACTTTCTCATTTTGTACTTTCATGAAATTATCCCCCTCCCCTCCAATTCATCTCCTGGCGGTTTCATTTTGTTTTTCTGACGGTCTCGAGTTTCCATTTCGTTCATTCTTCCCAATCCGTCAGATATCTAAAATCTAAAGAATGAAATGAGAACGTATTAGCGTTGTTTTGGATCATCTGAGAATCCATTAGACTTTCGTAAAACATTTAGTATCTGTCTATTTTCCAGTTTTGACGGCTATCGTCCAGCTACCGTACCCTTTTATGTCAAAAGATGTCTGTTTCAGAATAATTTGTTATAATATCAATTTACTCTTCAAACTTTTAACTTTACAATATTCGGAATAATAATGCCAATATGTAAAATCATACATTTTCGAAAATTGTCGCTACAGTATACCTTCATGCCTAGAGTTTTTTGTTTCAGCTTTATGAAATTGTTGGGAGCGGTTATTTTTTTTCTCGGAGGCATGAGAGCGAACTACTATACTACTTGAGCCTAATTTGAATATCATTTTCTCAATTTGATTGTTTTTTTCTATGTTTTTTCTCATTTCAATATGATTTACAACAAAAAATGAAACAATTTTAAAAATAGGCTCGAAGAATACGGTAGTTTGCTCTTGCTCCTTAAAGAAAAGTTTTAATAGTTTTATTCACTCTCACACTTTTATTTCTCAAAAAAAACGAGAATAATTACAACTGATACTTCAAATTTTGAATAATTCAAAATTTAAATTTTCAAATTTTTCAAAAATTATCGCTGATTGGTTATTTTTATAAACCGATAATTTTTATAATTTATTTTTCATATCAGTTTTTGTTAAGATAAATATGCCAATGCTTTTTTTTGCCTGACCCGTATTTCGAATACCGCGCGGTACTGTACCGAGTAGCAC</canonical>
            <polymorphic>CGGCGGAAAACGCGGCGCGCGCTTCGCATCCATTCCGGCTTACCATCATCTCGATTGTTGTGTGTGTTTCGGAATGAGATGACCTACCGACCTACAGTTCAACTTTCTCATTTTGTACTTTCATGAAATTATCCCCCTCCCCTCCAATTCATCTCCTGGCGGTTTCATTTTGTTTTTCTGACGGTCTCGAGTTTCCATTTCGTTCATTCTTCCCAATCCGTCAGATATCTAAAATCTAAAGAATGAAATGAGAACGTATTAGCGTTGTTTTGGATCATCTGAGAATCCATTAGACTTTCGTAAAACATTTAGTATCTGTCTATTTTCCAGTTTTGACGGCTATCGTCCAGCTACCGTACCCTTTTATGTCAAAAGATGTCTGTTTCAGAATAATTTGTTATAATATCAATTTACTCTTCAAACTTTTAACTTTACAATATTCGGAATAATAATGCCAATATGTAAAATCATACATTTTCGAAAATTGTCGCTACAGTATWCCTTCATGCCTAGAGTTTTTTGTTTCAGCTTTATGAAATTGTTGGGAGCGGTTATTTTTTTTCTCGGAGGCATGAGAGCGAACTACTATACTACTTGAGCCTAATTTGAATATCATTTTCTCAATTTGATTGTTTTTTTCTATGTTTTTTCTCATTTCAATATGATTTACAACAAAAAATGAAACAATTTTAAAAATAGGCTCGAAGAATACGGTAGTTTGCTCTTGCTCCTTAAAGAAAAGTTTTAATAGTTTTATTCACTCTCACACTTTTATTTCTCAAAAAAAACGAGAATAATTACAACTGATACTTCAAATTTTGAATAATTCAAAATTTAAATTTTCAAATTTTTCAAAAATTATCGCTGATTGGTTATTTTTATAAACCGATAATTTTTATAATTTATTTTTCATATCAGTTTTTGTTAAGATAAATATGCCAATGCTTTTTTTTGCCTGACCCGTATTTCGAATACCGCGCGGTACTGTACCGAGTAGCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTATAC</site>
                <isoschizomers>
                    <enzyme>BssNAI</enzyme>
                    <enzyme>Bst1107I</enzyme>
                    <enzyme>BstZ17I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAAAGATGTCTGTTTCAGAATA</pcr_primer_p1>
		<pcr_primer_p2>AATGATATTCAAATTAGGCTCAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCAAAAGATGTCTGTTTCAGAATAATTTGTTATAATATCAATTTACTCTTCAAACTTTTAACTTTACAATATTCGGAATAATAATGCCAATATGTAAAATCATACATTTTCGAAAATTGTCGCTACAGTATACCTTCATGCCTAGAGTTTTTTGTTTCAGCTTTATGAAATTGTTGGGAGCGGTTATTTTTTTTCTCGGAGGCATGAGAGCGAACTACTATACTACTTGAGCCTAATTTGAATATCATT</canonical_amplicon>
		<polymorphic_amplicon>TCAAAAGATGTCTGTTTCAGAATAATTTGTTATAATATCAATTTACTCTTCAAACTTTTAACTTTACAATATTCGGAATAATAATGCCAATATGTAAAATCATACATTTTCGAAAATTGTCGCTACAGTATWCCTTCATGCCTAGAGTTTTTTGTTTCAGCTTTATGAAATTGTTGGGAGCGGTTATTTTTTTTCTCGGAGGCATGAGAGCGAACTACTATACTACTTGAGCCTAATTTGAATATCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36576</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>68957</contig_pos>
        <strand>+</strand>
        <context>GGAGCGGTTA[A/C]TTTTTTTCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATGCCTAGAGTTTTTTGTTTCAGCTTTATGAAATTGTTGGGAGCGGTTA</left_flank>
        <right_flank>TTTTTTTCTCGGAGGCATGAGAGCGAACTACTATACTACTTGAGCCTAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTGTGTGTGTTTCGGAATGAGATGACCTACCGACCTACAGTTCAACTTTCTCATTTTGTACTTTCATGAAATTATCCCCCTCCCCTCCAATTCATCTCCTGGCGGTTTCATTTTGTTTTTCTGACGGTCTCGAGTTTCCATTTCGTTCATTCTTCCCAATCCGTCAGATATCTAAAATCTAAAGAATGAAATGAGAACGTATTAGCGTTGTTTTGGATCATCTGAGAATCCATTAGACTTTCGTAAAACATTTAGTATCTGTCTATTTTCCAGTTTTGACGGCTATCGTCCAGCTACCGTACCCTTTTATGTCAAAAGATGTCTGTTTCAGAATAATTTGTTATAATATCAATTTACTCTTCAAACTTTTAACTTTACAATATTCGGAATAATAATGCCAATATGTAAAATCATACATTTTCGAAAATTGTCGCTACAGTATACCTTCATGCCTAGAGTTTTTTGTTTCAGCTTTATGAAATTGTTGGGAGCGGTTATTTTTTTTCTCGGAGGCATGAGAGCGAACTACTATACTACTTGAGCCTAATTTGAATATCATTTTCTCAATTTGATTGTTTTTTTCTATGTTTTTTCTCATTTCAATATGATTTACAACAAAAAATGAAACAATTTTAAAAATAGGCTCGAAGAATACGGTAGTTTGCTCTTGCTCCTTAAAGAAAAGTTTTAATAGTTTTATTCACTCTCACACTTTTATTTCTCAAAAAAAACGAGAATAATTACAACTGATACTTCAAATTTTGAATAATTCAAAATTTAAATTTTCAAATTTTTCAAAAATTATCGCTGATTGGTTATTTTTATAAACCGATAATTTTTATAATTTATTTTTCATATCAGTTTTTGTTAAGATAAATATGCCAATGCTTTTTTTTGCCTGACCCGTATTTCGAATACCGCGCGGTACTGTACCGAGTAGCACCGGACAGAGGCGGACACCTTCTGAAGATAACGATCAAAAATTATTCGAGAAGAAA</canonical>
            <polymorphic>TGTTGTGTGTGTTTCGGAATGAGATGACCTACCGACCTACAGTTCAACTTTCTCATTTTGTACTTTCATGAAATTATCCCCCTCCCCTCCAATTCATCTCCTGGCGGTTTCATTTTGTTTTTCTGACGGTCTCGAGTTTCCATTTCGTTCATTCTTCCCAATCCGTCAGATATCTAAAATCTAAAGAATGAAATGAGAACGTATTAGCGTTGTTTTGGATCATCTGAGAATCCATTAGACTTTCGTAAAACATTTAGTATCTGTCTATTTTCCAGTTTTGACGGCTATCGTCCAGCTACCGTACCCTTTTATGTCAAAAGATGTCTGTTTCAGAATAATTTGTTATAATATCAATTTACTCTTCAAACTTTTAACTTTACAATATTCGGAATAATAATGCCAATATGTAAAATCATACATTTTCGAAAATTGTCGCTACAGTATACCTTCATGCCTAGAGTTTTTTGTTTCAGCTTTATGAAATTGTTGGGAGCGGTTAMTTTTTTTCTCGGAGGCATGAGAGCGAACTACTATACTACTTGAGCCTAATTTGAATATCATTTTCTCAATTTGATTGTTTTTTTCTATGTTTTTTCTCATTTCAATATGATTTACAACAAAAAATGAAACAATTTTAAAAATAGGCTCGAAGAATACGGTAGTTTGCTCTTGCTCCTTAAAGAAAAGTTTTAATAGTTTTATTCACTCTCACACTTTTATTTCTCAAAAAAAACGAGAATAATTACAACTGATACTTCAAATTTTGAATAATTCAAAATTTAAATTTTCAAATTTTTCAAAAATTATCGCTGATTGGTTATTTTTATAAACCGATAATTTTTATAATTTATTTTTCATATCAGTTTTTGTTAAGATAAATATGCCAATGCTTTTTTTTGCCTGACCCGTATTTCGAATACCGCGCGGTACTGTACCGAGTAGCACCGGACAGAGGCGGACACCTTCTGAAGATAACGATCAAAAATTATTCGAGAAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAAGATGTCTGTTTCAGAATA</pcr_primer_p1>
		<pcr_primer_p2>AATGATATTCAAATTAGGCTCAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCAAAAGATGTCTGTTTCAGAATAATTTGTTATAATATCAATTTACTCTTCAAACTTTTAACTTTACAATATTCGGAATAATAATGCCAATATGTAAAATCATACATTTTCGAAAATTGTCGCTACAGTATACCTTCATGCCTAGAGTTTTTTGTTTCAGCTTTATGAAATTGTTGGGAGCGGTTATTTTTTTTCTCGGAGGCATGAGAGCGAACTACTATACTACTTGAGCCTAATTTGAATATCATT</canonical_amplicon>
		<polymorphic_amplicon>TCAAAAGATGTCTGTTTCAGAATAATTTGTTATAATATCAATTTACTCTTCAAACTTTTAACTTTACAATATTCGGAATAATAATGCCAATATGTAAAATCATACATTTTCGAAAATTGTCGCTACAGTATACCTTCATGCCTAGAGTTTTTTGTTTCAGCTTTATGAAATTGTTGGGAGCGGTTAMTTTTTTTCTCGGAGGCATGAGAGCGAACTACTATACTACTTGAGCCTAATTTGAATATCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36577</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>68995</contig_pos>
        <strand></strand>
        <context>CTACTATACT[A/C]CTTGAGCCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGGGAGCGGTTATTTTTTTTCTCGGAGGCATGAGAGCGAACTACTATACT</left_flank>
        <right_flank>CTTGAGCCTAATTTGAATATCATTTTCTCAATTTGATTGTTTTTTTCTAT</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGTTCAACTTTCTCATTTTGTACTTTCATGAAATTATCCCCCTCCCCTCCAATTCATCTCCTGGCGGTTTCATTTTGTTTTTCTGACGGTCTCGAGTTTCCATTTCGTTCATTCTTCCCAATCCGTCAGATATCTAAAATCTAAAGAATGAAATGAGAACGTATTAGCGTTGTTTTGGATCATCTGAGAATCCATTAGACTTTCGTAAAACATTTAGTATCTGTCTATTTTCCAGTTTTGACGGCTATCGTCCAGCTACCGTACCCTTTTATGTCAAAAGATGTCTGTTTCAGAATAATTTGTTATAATATCAATTTACTCTTCAAACTTTTAACTTTACAATATTCGGAATAATAATGCCAATATGTAAAATCATACATTTTCGAAAATTGTCGCTACAGTATACCTTCATGCCTAGAGTTTTTTGTTTCAGCTTTATGAAATTGTTGGGAGCGGTTATTTTTTTTCTCGGAGGCATGAGAGCGAACTACTATACTACTTGAGCCTAATTTGAATATCATTTTCTCAATTTGATTGTTTTTTTCTATGTTTTTTCTCATTTCAATATGATTTACAACAAAAAATGAAACAATTTTAAAAATAGGCTCGAAGAATACGGTAGTTTGCTCTTGCTCCTTAAAGAAAAGTTTTAATAGTTTTATTCACTCTCACACTTTTATTTCTCAAAAAAAACGAGAATAATTACAACTGATACTTCAAATTTTGAATAATTCAAAATTTAAATTTTCAAATTTTTCAAAAATTATCGCTGATTGGTTATTTTTATAAACCGATAATTTTTATAATTTATTTTTCATATCAGTTTTTGTTAAGATAAATATGCCAATGCTTTTTTTTGCCTGACCCGTATTTCGAATACCGCGCGGTACTGTACCGAGTAGCACCGGACAGAGGCGGACACCTTCTGAAGATAACGATCAAAAATTATTCGAGAAGAAAAGTTCAAATCTTGTCTTCGTCTCTATACATTTTTCAAA</canonical>
            <polymorphic>ACAGTTCAACTTTCTCATTTTGTACTTTCATGAAATTATCCCCCTCCCCTCCAATTCATCTCCTGGCGGTTTCATTTTGTTTTTCTGACGGTCTCGAGTTTCCATTTCGTTCATTCTTCCCAATCCGTCAGATATCTAAAATCTAAAGAATGAAATGAGAACGTATTAGCGTTGTTTTGGATCATCTGAGAATCCATTAGACTTTCGTAAAACATTTAGTATCTGTCTATTTTCCAGTTTTGACGGCTATCGTCCAGCTACCGTACCCTTTTATGTCAAAAGATGTCTGTTTCAGAATAATTTGTTATAATATCAATTTACTCTTCAAACTTTTAACTTTACAATATTCGGAATAATAATGCCAATATGTAAAATCATACATTTTCGAAAATTGTCGCTACAGTATACCTTCATGCCTAGAGTTTTTTGTTTCAGCTTTATGAAATTGTTGGGAGCGGTTATTTTTTTTCTCGGAGGCATGAGAGCGAACTACTATACTMCTTGAGCCTAATTTGAATATCATTTTCTCAATTTGATTGTTTTTTTCTATGTTTTTTCTCATTTCAATATGATTTACAACAAAAAATGAAACAATTTTAAAAATAGGCTCGAAGAATACGGTAGTTTGCTCTTGCTCCTTAAAGAAAAGTTTTAATAGTTTTATTCACTCTCACACTTTTATTTCTCAAAAAAAACGAGAATAATTACAACTGATACTTCAAATTTTGAATAATTCAAAATTTAAATTTTCAAATTTTTCAAAAATTATCGCTGATTGGTTATTTTTATAAACCGATAATTTTTATAATTTATTTTTCATATCAGTTTTTGTTAAGATAAATATGCCAATGCTTTTTTTTGCCTGACCCGTATTTCGAATACCGCGCGGTACTGTACCGAGTAGCACCGGACAGAGGCGGACACCTTCTGAAGATAACGATCAAAAATTATTCGAGAAGAAAAGTTCAAATCTTGTCTTCGTCTCTATACATTTTTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTCAGCTTTATGAAATTGTTG</pcr_primer_p1>
		<pcr_primer_p2>AACTTTTCTTTAAGGAGCAAGAG</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>GTTTCAGCTTTATGAAATTGTTGGGAGCGGTTATTTTTTTTCTCGGAGGCATGAGAGCGAACTACTATACTACTTGAGCCTAATTTGAATATCATTTTCTCAATTTGATTGTTTTTTTCTATGTTTTTTCTCATTTCAATATGATTTACAACAAAAAATGAAACAATTTTAAAAATAGGCTCGAAGAATACGGTAGTTTGCTCTTGCTCCTTAAAGAAAAGTT</canonical_amplicon>
		<polymorphic_amplicon>GTTTCAGCTTTATGAAATTGTTGGGAGCGGTTATTTTTTTTCTCGGAGGCATGAGAGCGAACTACTATACTMCTTGAGCCTAATTTGAATATCATTTTCTCAATTTGATTGTTTTTTTCTATGTTTTTTCTCATTTCAATATGATTTACAACAAAAAATGAAACAATTTTAAAAATAGGCTCGAAGAATACGGTAGTTTGCTCTTGCTCCTTAAAGAAAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36578</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>127669</contig_pos>
        <strand></strand>
        <context>GACTGTTCCA[A/C]TAGTCAAACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGTGCCATGCAGTTTCAATATTCTCTTTTTATGATCCAGGACTGTTCCA</left_flank>
        <right_flank>TAGTCAAACGCCGCTCAGACAGTTACTATCTATTGGTATCAGTATCTGAT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACCCTTTCCACTAGTTCACTCTCGATTCTCATTCGGGGATAACACACAATAAATGGACACATTGACAAAAAAAAGGGGAAAAACGTGGCGGTTCGGATATCAAGTGAAAAGGTAGAATACGTTGGTGTCGTCTCTAATCGGATTCGATAAATACACAACAATCGCATATTCTCCTTTTCCAATTTCGATTTTCGAACCTAAACTAACCGAATTTGTTCAAAATTCGGTATAATCCCGAAGGTATGCGTGCAGTTTGGCACATAACTCGGCGGGTATAGCGACTCGTGAGTACAACGAGGTACAAAGTGATTCAAACGTACAAAAGCCACACTTCAGGGGTACAACGTTATACTATTTACAGGTATTTTGTACCCCAGAATTGAGTACTTTGTACTTCTGAATTGCTTTGTACTCTAATGACTCCAAAATTTTTGTACCCTCCGAATTATGTGCCATGCAGTTTCAATATTCTCTTTTTATGATCCAGGACTGTTCCAATAGTCAAACGCCGCTCAGACAGTTACTATCTATTGGTATCAGTATCTGATGATTATCTTCCAGACACCTCTCGTGTTTTGACTCCGGAGAACAACGAATTGCCAGAAAACCTGCAGGACTTCATTTTGCAATACTCAAATCAGTACACCAGAGAGGACAGCGTCAAGGGACGCCCTCCAAGCGCCGACTCGGGAGTCTGCTCCCCAATGTCGGCTCGTTCGGCACCCAATGCATCTCCACAAGTCCCACAAGGAACCTGCAGGTAAGAAATTTCAGGGAATCGATAGTTTTTTATCTTGGAAAGCCAGAAAAAGCGCGTGACTCGGCAAGAATATAATAGGTTAGGGAGGTATCTAGGGAGATGGGGGATAGGTTGATGTTGATATCTAGCCTCTCAGCATTTTTGTTTTCAGGGAAATTTTTGTAGCTTCATAACAACTCCACTCACACAATTATTACGCGCGTCAAGAATAGTACGATTTTCTGATGAAGTTGATAAC</canonical>
            <polymorphic>GTACCCTTTCCACTAGTTCACTCTCGATTCTCATTCGGGGATAACACACAATAAATGGACACATTGACAAAAAAAAGGGGAAAAACGTGGCGGTTCGGATATCAAGTGAAAAGGTAGAATACGTTGGTGTCGTCTCTAATCGGATTCGATAAATACACAACAATCGCATATTCTCCTTTTCCAATTTCGATTTTCGAACCTAAACTAACCGAATTTGTTCAAAATTCGGTATAATCCCGAAGGTATGCGTGCAGTTTGGCACATAACTCGGCGGGTATAGCGACTCGTGAGTACAACGAGGTACAAAGTGATTCAAACGTACAAAAGCCACACTTCAGGGGTACAACGTTATACTATTTACAGGTATTTTGTACCCCAGAATTGAGTACTTTGTACTTCTGAATTGCTTTGTACTCTAATGACTCCAAAATTTTTGTACCCTCCGAATTATGTGCCATGCAGTTTCAATATTCTCTTTTTATGATCCAGGACTGTTCCAMTAGTCAAACGCCGCTCAGACAGTTACTATCTATTGGTATCAGTATCTGATGATTATCTTCCAGACACCTCTCGTGTTTTGACTCCGGAGAACAACGAATTGCCAGAAAACCTGCAGGACTTCATTTTGCAATACTCAAATCAGTACACCAGAGAGGACAGCGTCAAGGGACGCCCTCCAAGCGCCGACTCGGGAGTCTGCTCCCCAATGTCGGCTCGTTCGGCACCCAATGCATCTCCACAAGTCCCACAAGGAACCTGCAGGTAAGAAATTTCAGGGAATCGATAGTTTTTTATCTTGGAAAGCCAGAAAAAGCGCGTGACTCGGCAAGAATATAATAGGTTAGGGAGGTATCTAGGGAGATGGGGGATAGGTTGATGTTGATATCTAGCCTCTCAGCATTTTTGTTTTCAGGGAAATTTTTGTAGCTTCATAACAACTCCACTCACACAATTATTACGCGCGTCAAGAATAGTACGATTTTCTGATGAAGTTGATAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTGTACCCTCCGAATTAT</pcr_primer_p1>
		<pcr_primer_p2>CTGTCCTCTCTGGTGTACTGAT</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTGTACCCTCCGAATTATGTGCCATGCAGTTTCAATATTCTCTTTTTATGATCCAGGACTGTTCCAATAGTCAAACGCCGCTCAGACAGTTACTATCTATTGGTATCAGTATCTGATGATTATCTTCCAGACACCTCTCGTGTTTTGACTCCGGAGAACAACGAATTGCCAGAAAACCTGCAGGACTTCATTTTGCAATACTCAAATCAGTACACCAGAGAGGACAG</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTGTACCCTCCGAATTATGTGCCATGCAGTTTCAATATTCTCTTTTTATGATCCAGGACTGTTCCAMTAGTCAAACGCCGCTCAGACAGTTACTATCTATTGGTATCAGTATCTGATGATTATCTTCCAGACACCTCTCGTGTTTTGACTCCGGAGAACAACGAATTGCCAGAAAACCTGCAGGACTTCATTTTGCAATACTCAAATCAGTACACCAGAGAGGACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36579</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>158677</contig_pos>
        <strand>+</strand>
        <context>CGCCGAACAA[A/C]ACAGAACAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCTGCTACCTAACGTTCCCGTCATTCAAATAATACCAGGCGCCGAACAA</left_flank>
        <right_flank>ACAGAACAAAACCGAGAAATAATGGATTTGATTATTGCTAATAACCGACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTTGAGATTAAGCTACCGGTCAATAAGACATAAAAAACGGATTGTTGAGTTCATTTTCATCCATTTCGATCATTTACAGGAGTCTGGAGCTCGGATTTCAAGTTTTCGATCGTTTTGAAACTTTTGGAAAATGGGAAAAAGACCAAAATTGGAAACTTTGCATTCACAGAACTTTTCGAGAATTCCCAGTTTTTCAGCTATTAGTCGATTTCTAAAGGTCCTCTTTTTTCGGCCAATTTTTGTACTGATAACTTGAAAAACGGGTGTGATTGAAATTTGGATAAAAGCTAAACAATTAGTGATTTTCAAAAATTCTGTGAATGCAAAATTTTTAATCTAGGTCTGTTTTCTACCCTCAAAAGATTTCAAAGTGACGAAGAGAAATAGAAGCGGATGCTTTTAAATTTAAGAACGAGGCTATTTCTTATCAAATCTGCTTAACCAAATATCTGCTACCTAACGTTCCCGTCATTCAAATAATACCAGGCGCCGAACAACACAGAACAAAACCGAGAAATAATGGATTTGATTATTGCTAATAACCGACCAATCGAAAAGAGAGAAGGAGCGAATTTTCTGTTTTCCTCAGAATGGTGATCGGTTCCCTAAAACCAGGGTTTGAAGAACAAGAGAAGGGGAAAATACGAAGAAAAAGAGACATGATGACACAAACATCTGCTGAAAATAGAAAAGGAAGAGGAAGAACGAGTTGCGCATTGACCCCTTCACAAAATGGTCCCATGGGAAAGAGACGAGAAGACTATAGGGGAAGAAGAACGAAACCAGAAGAGCAACTTTATCAAGAACTTCAGTCACATTTTTAAACAAGACTGAGGCTAAGGCAGTGTGTAAAAATCTTGTCTAACTATACAGTTTTTAGTTTGTTTCTTTAAAAAATTTGATTTTCAGCCAGTTTTTTATCAGACGGAAGAACGAGTAGTACGGTATCTTGTTTATCGCATTACAATGATAGTTTAAGGATCAGTCGGAAAAAAAGT</canonical>
            <polymorphic>AGCTTGAGATTAAGCTACCGGTCAATAAGACATAAAAAACGGATTGTTGAGTTCATTTTCATCCATTTCGATCATTTACAGGAGTCTGGAGCTCGGATTTCAAGTTTTCGATCGTTTTGAAACTTTTGGAAAATGGGAAAAAGACCAAAATTGGAAACTTTGCATTCACAGAACTTTTCGAGAATTCCCAGTTTTTCAGCTATTAGTCGATTTCTAAAGGTCCTCTTTTTTCGGCCAATTTTTGTACTGATAACTTGAAAAACGGGTGTGATTGAAATTTGGATAAAAGCTAAACAATTAGTGATTTTCAAAAATTCTGTGAATGCAAAATTTTTAATCTAGGTCTGTTTTCTACCCTCAAAAGATTTCAAAGTGACGAAGAGAAATAGAAGCGGATGCTTTTAAATTTAAGAACGAGGCTATTTCTTATCAAATCTGCTTAACCAAATATCTGCTACCTAACGTTCCCGTCATTCAAATAATACCAGGCGCCGAACAAMACAGAACAAAACCGAGAAATAATGGATTTGATTATTGCTAATAACCGACCAATCGAAAAGAGAGAAGGAGCGAATTTTCTGTTTTCCTCAGAATGGTGATCGGTTCCCTAAAACCAGGGTTTGAAGAACAAGAGAAGGGGAAAATACGAAGAAAAAGAGACATGATGACACAAACATCTGCTGAAAATAGAAAAGGAAGAGGAAGAACGAGTTGCGCATTGACCCCTTCACAAAATGGTCCCATGGGAAAGAGACGAGAAGACTATAGGGGAAGAAGAACGAAACCAGAAGAGCAACTTTATCAAGAACTTCAGTCACATTTTTAAACAAGACTGAGGCTAAGGCAGTGTGTAAAAATCTTGTCTAACTATACAGTTTTTAGTTTGTTTCTTTAAAAAATTTGATTTTCAGCCAGTTTTTTATCAGACGGAAGAACGAGTAGTACGGTATCTTGTTTATCGCATTACAATGATAGTTTAAGGATCAGTCGGAAAAAAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>168 149 126 100 97 87 72 60 54 33 32 18 2 2</canonical_bands>
                <polymorphic_bands>223 168 149 100 87 72 60 54 33 32 18 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATATCTGCTACCTAACGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CTTTTCTATTTTCAGCAGATGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATATCTGCTACCTAACGTTCCCGTCATTCAAATAATACCAGGCGCCGAACAACACAGAACAAAACCGAGAAATAATGGATTTGATTATTGCTAATAACCGACCAATCGAAAAGAGAGAAGGAGCGAATTTTCTGTTTTCCTCAGAATGGTGATCGGTTCCCTAAAACCAGGGTTTGAAGAACAAGAGAAGGGGAAAATACGAAGAAAAAGAGACATGATGACACAAACATCTGCTGAAAATAGAAAAG</canonical_amplicon>
		<polymorphic_amplicon>AAATATCTGCTACCTAACGTTCCCGTCATTCAAATAATACCAGGCGCCGAACAAMACAGAACAAAACCGAGAAATAATGGATTTGATTATTGCTAATAACCGACCAATCGAAAAGAGAGAAGGAGCGAATTTTCTGTTTTCCTCAGAATGGTGATCGGTTCCCTAAAACCAGGGTTTGAAGAACAAGAGAAGGGGAAAATACGAAGAAAAAGAGACATGATGACACAAACATCTGCTGAAAATAGAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36580</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>158697</contig_pos>
        <strand>+</strand>
        <context>AACCGAGAAA[C/T]AATGGATTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCATTCAAATAATACCAGGCGCCGAACAACACAGAACAAAACCGAGAAA</left_flank>
        <right_flank>AATGGATTTGATTATTGCTAATAACCGACCAATCGAAAAGAGAGAAGGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCAATAAGACATAAAAAACGGATTGTTGAGTTCATTTTCATCCATTTCGATCATTTACAGGAGTCTGGAGCTCGGATTTCAAGTTTTCGATCGTTTTGAAACTTTTGGAAAATGGGAAAAAGACCAAAATTGGAAACTTTGCATTCACAGAACTTTTCGAGAATTCCCAGTTTTTCAGCTATTAGTCGATTTCTAAAGGTCCTCTTTTTTCGGCCAATTTTTGTACTGATAACTTGAAAAACGGGTGTGATTGAAATTTGGATAAAAGCTAAACAATTAGTGATTTTCAAAAATTCTGTGAATGCAAAATTTTTAATCTAGGTCTGTTTTCTACCCTCAAAAGATTTCAAAGTGACGAAGAGAAATAGAAGCGGATGCTTTTAAATTTAAGAACGAGGCTATTTCTTATCAAATCTGCTTAACCAAATATCTGCTACCTAACGTTCCCGTCATTCAAATAATACCAGGCGCCGAACAACACAGAACAAAACCGAGAAATAATGGATTTGATTATTGCTAATAACCGACCAATCGAAAAGAGAGAAGGAGCGAATTTTCTGTTTTCCTCAGAATGGTGATCGGTTCCCTAAAACCAGGGTTTGAAGAACAAGAGAAGGGGAAAATACGAAGAAAAAGAGACATGATGACACAAACATCTGCTGAAAATAGAAAAGGAAGAGGAAGAACGAGTTGCGCATTGACCCCTTCACAAAATGGTCCCATGGGAAAGAGACGAGAAGACTATAGGGGAAGAAGAACGAAACCAGAAGAGCAACTTTATCAAGAACTTCAGTCACATTTTTAAACAAGACTGAGGCTAAGGCAGTGTGTAAAAATCTTGTCTAACTATACAGTTTTTAGTTTGTTTCTTTAAAAAATTTGATTTTCAGCCAGTTTTTTATCAGACGGAAGAACGAGTAGTACGGTATCTTGTTTATCGCATTACAATGATAGTTTAAGGATCAGTCGGAAAAAAAGTGAAAACAAAAGTTCGAAATG</canonical>
            <polymorphic>GTCAATAAGACATAAAAAACGGATTGTTGAGTTCATTTTCATCCATTTCGATCATTTACAGGAGTCTGGAGCTCGGATTTCAAGTTTTCGATCGTTTTGAAACTTTTGGAAAATGGGAAAAAGACCAAAATTGGAAACTTTGCATTCACAGAACTTTTCGAGAATTCCCAGTTTTTCAGCTATTAGTCGATTTCTAAAGGTCCTCTTTTTTCGGCCAATTTTTGTACTGATAACTTGAAAAACGGGTGTGATTGAAATTTGGATAAAAGCTAAACAATTAGTGATTTTCAAAAATTCTGTGAATGCAAAATTTTTAATCTAGGTCTGTTTTCTACCCTCAAAAGATTTCAAAGTGACGAAGAGAAATAGAAGCGGATGCTTTTAAATTTAAGAACGAGGCTATTTCTTATCAAATCTGCTTAACCAAATATCTGCTACCTAACGTTCCCGTCATTCAAATAATACCAGGCGCCGAACAACACAGAACAAAACCGAGAAAYAATGGATTTGATTATTGCTAATAACCGACCAATCGAAAAGAGAGAAGGAGCGAATTTTCTGTTTTCCTCAGAATGGTGATCGGTTCCCTAAAACCAGGGTTTGAAGAACAAGAGAAGGGGAAAATACGAAGAAAAAGAGACATGATGACACAAACATCTGCTGAAAATAGAAAAGGAAGAGGAAGAACGAGTTGCGCATTGACCCCTTCACAAAATGGTCCCATGGGAAAGAGACGAGAAGACTATAGGGGAAGAAGAACGAAACCAGAAGAGCAACTTTATCAAGAACTTCAGTCACATTTTTAAACAAGACTGAGGCTAAGGCAGTGTGTAAAAATCTTGTCTAACTATACAGTTTTTAGTTTGTTTCTTTAAAAAATTTGATTTTCAGCCAGTTTTTTATCAGACGGAAGAACGAGTAGTACGGTATCTTGTTTATCGCATTACAATGATAGTTTAAGGATCAGTCGGAAAAAAAGTGAAAACAAAAGTTCGAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATATCTGCTACCTAACGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CTTTTCTATTTTCAGCAGATGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATATCTGCTACCTAACGTTCCCGTCATTCAAATAATACCAGGCGCCGAACAACACAGAACAAAACCGAGAAATAATGGATTTGATTATTGCTAATAACCGACCAATCGAAAAGAGAGAAGGAGCGAATTTTCTGTTTTCCTCAGAATGGTGATCGGTTCCCTAAAACCAGGGTTTGAAGAACAAGAGAAGGGGAAAATACGAAGAAAAAGAGACATGATGACACAAACATCTGCTGAAAATAGAAAAG</canonical_amplicon>
		<polymorphic_amplicon>AAATATCTGCTACCTAACGTTCCCGTCATTCAAATAATACCAGGCGCCGAACAACACAGAACAAAACCGAGAAAYAATGGATTTGATTATTGCTAATAACCGACCAATCGAAAAGAGAGAAGGAGCGAATTTTCTGTTTTCCTCAGAATGGTGATCGGTTCCCTAAAACCAGGGTTTGAAGAACAAGAGAAGGGGAAAATACGAAGAAAAAGAGACATGATGACACAAACATCTGCTGAAAATAGAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36581</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>241293</contig_pos>
        <strand></strand>
        <context>aaatgtacaa[T/A]aaaacttttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CCAGAAGAAAATGGTTGTGAATTTACAGTGTTGGTCAATAAAATGTACAA</left_flank>
        <right_flank>AAAACTTTTTTTTTCAGTTTTTTCTCATTTACACCACTTTCAGAAGTCTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGTTATTTTTTTCTCCGTGTCTGTCTTCTTTGAAATATGATTTGGGAGACGTCAAACTGGGCGGGGTCCTAGAGACCCTGTTAGTTTGAAGGATTAGAAATCGTCAATGGAAATTGGCTCTTTTTTGTGTTTTGATTGTTTCTTGATCTTCATTTATTTTTAGGGTTTTTTGAAGATAACGCGTCTTCTGATAACGCATGTGGTGATTACGCATGACTTTGGTTTGTTATGAAAATCGAACCACATGCAGTAAGCCGAAAAACTGGAAACGGATATAAAAGGTTCATCGTTACCCAATTTTCAGCTAGTTGTACTTTCGAGATTTCTTTCGAAGACCAATTTTATCAAGATTTTCAGTTTTCTGTAATCTTCCGTTCTGTCTCATTGTTTTTTTTAAAGATTCCTTTAACAAATTCGCCCGGGCAAAATGTCAGGATACTGTAAAACCCAGAAGAAAATGGTTGTGAATTTACAGTGTTGGTCAATAAAATGTACAATAAAACTTTTTTTTTCAGTTTTTTCTCATTTACACCACTTTCAGAAGTCTGTAGCTCGGCTGTCAATTGTCGGATCACTTTAAAAATCCTGGAAGACGTAAAACAGGCCATGATGATGAGTTTTGCAGTCACAGACTTTTCTTAAAGTTCCTAGTTTGTCAGCTATTCAAAGATTTCTGAAAGACACCTGTTTTTTCCCGTTTTTAGTACGAACGGGCCAAAAAGGGATGACTTTCAGAAATCGGGAAATAGCTACAAAACTAGAAAATGTCTTATAATTCTGTAAATGCAAAATTTTCAATCTATAGCTGTTTTATACCCTCCAAAATTTCCAAAAAAAAAACCGAAATTATGACAACCTAGCTGCCGACTCTTGAAAATGCTGTAAATTACAGAAAATTTACAGAAATATACGTTTTTGTACACCTTATTGACCGGTGCTGTATTTGTCTTGAATTTTCGGATACTGTGCATCATCTAGATGCTTTAAAATTATATTTC</canonical>
            <polymorphic>CATGTTATTTTTTTCTCCGTGTCTGTCTTCTTTGAAATATGATTTGGGAGACGTCAAACTGGGCGGGGTCCTAGAGACCCTGTTAGTTTGAAGGATTAGAAATCGTCAATGGAAATTGGCTCTTTTTTGTGTTTTGATTGTTTCTTGATCTTCATTTATTTTTAGGGTTTTTTGAAGATAACGCGTCTTCTGATAACGCATGTGGTGATTACGCATGACTTTGGTTTGTTATGAAAATCGAACCACATGCAGTAAGCCGAAAAACTGGAAACGGATATAAAAGGTTCATCGTTACCCAATTTTCAGCTAGTTGTACTTTCGAGATTTCTTTCGAAGACCAATTTTATCAAGATTTTCAGTTTTCTGTAATCTTCCGTTCTGTCTCATTGTTTTTTTTAAAGATTCCTTTAACAAATTCGCCCGGGCAAAATGTCAGGATACTGTAAAACCCAGAAGAAAATGGTTGTGAATTTACAGTGTTGGTCAATAAAATGTACAAWAAAACTTTTTTTTTCAGTTTTTTCTCATTTACACCACTTTCAGAAGTCTGTAGCTCGGCTGTCAATTGTCGGATCACTTTAAAAATCCTGGAAGACGTAAAACAGGCCATGATGATGAGTTTTGCAGTCACAGACTTTTCTTAAAGTTCCTAGTTTGTCAGCTATTCAAAGATTTCTGAAAGACACCTGTTTTTTCCCGTTTTTAGTACGAACGGGCCAAAAAGGGATGACTTTCAGAAATCGGGAAATAGCTACAAAACTAGAAAATGTCTTATAATTCTGTAAATGCAAAATTTTCAATCTATAGCTGTTTTATACCCTCCAAAATTTCCAAAAAAAAAACCGAAATTATGACAACCTAGCTGCCGACTCTTGAAAATGCTGTAAATTACAGAAAATTTACAGAAATATACGTTTTTGTACACCTTATTGACCGGTGCTGTATTTGTCTTGAATTTTCGGATACTGTGCATCATCTAGATGCTTTAAAATTATATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGAAGAAAATGGTTGTGA</pcr_primer_p1>
		<pcr_primer_p2>TATCCGAAAATTCAAGACAAATA</pcr_primer_p2>
		<pcr_amplicon_size>516</pcr_amplicon_size>
		<canonical_amplicon>CCAGAAGAAAATGGTTGTGAATTTACAGTGTTGGTCAATAAAATGTACAATAAAACTTTTTTTTTCAGTTTTTTCTCATTTACACCACTTTCAGAAGTCTGTAGCTCGGCTGTCAATTGTCGGATCACTTTAAAAATCCTGGAAGACGTAAAACAGGCCATGATGATGAGTTTTGCAGTCACAGACTTTTCTTAAAGTTCCTAGTTTGTCAGCTATTCAAAGATTTCTGAAAGACACCTGTTTTTTCCCGTTTTTAGTACGAACGGGCCAAAAAGGGATGACTTTCAGAAATCGGGAAATAGCTACAAAACTAGAAAATGTCTTATAATTCTGTAAATGCAAAATTTTCAATCTATAGCTGTTTTATACCCTCCAAAATTTCCAAAAAAAAAACCGAAATTATGACAACCTAGCTGCCGACTCTTGAAAATGCTGTAAATTACAGAAAATTTACAGAAATATACGTTTTTGTACACCTTATTGACCGGTGCTGTATTTGTCTTGAATTTTCGGATA</canonical_amplicon>
		<polymorphic_amplicon>CCAGAAGAAAATGGTTGTGAATTTACAGTGTTGGTCAATAAAATGTACAAWAAAACTTTTTTTTTCAGTTTTTTCTCATTTACACCACTTTCAGAAGTCTGTAGCTCGGCTGTCAATTGTCGGATCACTTTAAAAATCCTGGAAGACGTAAAACAGGCCATGATGATGAGTTTTGCAGTCACAGACTTTTCTTAAAGTTCCTAGTTTGTCAGCTATTCAAAGATTTCTGAAAGACACCTGTTTTTTCCCGTTTTTAGTACGAACGGGCCAAAAAGGGATGACTTTCAGAAATCGGGAAATAGCTACAAAACTAGAAAATGTCTTATAATTCTGTAAATGCAAAATTTTCAATCTATAGCTGTTTTATACCCTCCAAAATTTCCAAAAAAAAAACCGAAATTATGACAACCTAGCTGCCGACTCTTGAAAATGCTGTAAATTACAGAAAATTTACAGAAATATACGTTTTTGTACACCTTATTGACCGGTGCTGTATTTGTCTTGAATTTTCGGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36582</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>241330</contig_pos>
        <strand></strand>
        <context>atttacacca[C/T]tttcaraagw</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAAAATGTACAATAAAACTTTTTTTTTCAGTTTTTTCTCATTTACACCA</left_flank>
        <right_flank>TTTCAGAAGTCTGTAGCTCGGCTGTCAATTGTCGGATCACTTTAAAAATC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGATTTGGGAGACGTCAAACTGGGCGGGGTCCTAGAGACCCTGTTAGTTTGAAGGATTAGAAATCGTCAATGGAAATTGGCTCTTTTTTGTGTTTTGATTGTTTCTTGATCTTCATTTATTTTTAGGGTTTTTTGAAGATAACGCGTCTTCTGATAACGCATGTGGTGATTACGCATGACTTTGGTTTGTTATGAAAATCGAACCACATGCAGTAAGCCGAAAAACTGGAAACGGATATAAAAGGTTCATCGTTACCCAATTTTCAGCTAGTTGTACTTTCGAGATTTCTTTCGAAGACCAATTTTATCAAGATTTTCAGTTTTCTGTAATCTTCCGTTCTGTCTCATTGTTTTTTTTAAAGATTCCTTTAACAAATTCGCCCGGGCAAAATGTCAGGATACTGTAAAACCCAGAAGAAAATGGTTGTGAATTTACAGTGTTGGTCAATAAAATGTACAATAAAACTTTTTTTTTCAGTTTTTTCTCATTTACACCACTTTCAGAAGTCTGTAGCTCGGCTGTCAATTGTCGGATCACTTTAAAAATCCTGGAAGACGTAAAACAGGCCATGATGATGAGTTTTGCAGTCACAGACTTTTCTTAAAGTTCCTAGTTTGTCAGCTATTCAAAGATTTCTGAAAGACACCTGTTTTTTCCCGTTTTTAGTACGAACGGGCCAAAAAGGGATGACTTTCAGAAATCGGGAAATAGCTACAAAACTAGAAAATGTCTTATAATTCTGTAAATGCAAAATTTTCAATCTATAGCTGTTTTATACCCTCCAAAATTTCCAAAAAAAAAACCGAAATTATGACAACCTAGCTGCCGACTCTTGAAAATGCTGTAAATTACAGAAAATTTACAGAAATATACGTTTTTGTACACCTTATTGACCGGTGCTGTATTTGTCTTGAATTTTCGGATACTGTGCATCATCTAGATGCTTTAAAATTATATTTCAATTTTTTAAACTCATATCACTTTTTAATCAATCAAA</canonical>
            <polymorphic>TATGATTTGGGAGACGTCAAACTGGGCGGGGTCCTAGAGACCCTGTTAGTTTGAAGGATTAGAAATCGTCAATGGAAATTGGCTCTTTTTTGTGTTTTGATTGTTTCTTGATCTTCATTTATTTTTAGGGTTTTTTGAAGATAACGCGTCTTCTGATAACGCATGTGGTGATTACGCATGACTTTGGTTTGTTATGAAAATCGAACCACATGCAGTAAGCCGAAAAACTGGAAACGGATATAAAAGGTTCATCGTTACCCAATTTTCAGCTAGTTGTACTTTCGAGATTTCTTTCGAAGACCAATTTTATCAAGATTTTCAGTTTTCTGTAATCTTCCGTTCTGTCTCATTGTTTTTTTTAAAGATTCCTTTAACAAATTCGCCCGGGCAAAATGTCAGGATACTGTAAAACCCAGAAGAAAATGGTTGTGAATTTACAGTGTTGGTCAATAAAATGTACAATAAAACTTTTTTTTTCAGTTTTTTCTCATTTACACCAYTTTCAGAAGTCTGTAGCTCGGCTGTCAATTGTCGGATCACTTTAAAAATCCTGGAAGACGTAAAACAGGCCATGATGATGAGTTTTGCAGTCACAGACTTTTCTTAAAGTTCCTAGTTTGTCAGCTATTCAAAGATTTCTGAAAGACACCTGTTTTTTCCCGTTTTTAGTACGAACGGGCCAAAAAGGGATGACTTTCAGAAATCGGGAAATAGCTACAAAACTAGAAAATGTCTTATAATTCTGTAAATGCAAAATTTTCAATCTATAGCTGTTTTATACCCTCCAAAATTTCCAAAAAAAAAACCGAAATTATGACAACCTAGCTGCCGACTCTTGAAAATGCTGTAAATTACAGAAAATTTACAGAAATATACGTTTTTGTACACCTTATTGACCGGTGCTGTATTTGTCTTGAATTTTCGGATACTGTGCATCATCTAGATGCTTTAAAATTATATTTCAATTTTTTAAACTCATATCACTTTTTAATCAATCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>239 223 94 73 55 54 54 50 40 38 31 17 15 11 3 3</canonical_bands>
                <polymorphic_bands>239 223 94 73 55 54 54 50 43 38 31 17 15 11 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAAGAAAATGGTTGTGAAT</pcr_primer_p1>
		<pcr_primer_p2>TCCGAAAATTCAAGACAAATAC</pcr_primer_p2>
		<pcr_amplicon_size>513</pcr_amplicon_size>
		<canonical_amplicon>CAGAAGAAAATGGTTGTGAATTTACAGTGTTGGTCAATAAAATGTACAATAAAACTTTTTTTTTCAGTTTTTTCTCATTTACACCACTTTCAGAAGTCTGTAGCTCGGCTGTCAATTGTCGGATCACTTTAAAAATCCTGGAAGACGTAAAACAGGCCATGATGATGAGTTTTGCAGTCACAGACTTTTCTTAAAGTTCCTAGTTTGTCAGCTATTCAAAGATTTCTGAAAGACACCTGTTTTTTCCCGTTTTTAGTACGAACGGGCCAAAAAGGGATGACTTTCAGAAATCGGGAAATAGCTACAAAACTAGAAAATGTCTTATAATTCTGTAAATGCAAAATTTTCAATCTATAGCTGTTTTATACCCTCCAAAATTTCCAAAAAAAAAACCGAAATTATGACAACCTAGCTGCCGACTCTTGAAAATGCTGTAAATTACAGAAAATTTACAGAAATATACGTTTTTGTACACCTTATTGACCGGTGCTGTATTTGTCTTGAATTTTCGGA</canonical_amplicon>
		<polymorphic_amplicon>CAGAAGAAAATGGTTGTGAATTTACAGTGTTGGTCAATAAAATGTACAATAAAACTTTTTTTTTCAGTTTTTTCTCATTTACACCAYTTTCAGAAGTCTGTAGCTCGGCTGTCAATTGTCGGATCACTTTAAAAATCCTGGAAGACGTAAAACAGGCCATGATGATGAGTTTTGCAGTCACAGACTTTTCTTAAAGTTCCTAGTTTGTCAGCTATTCAAAGATTTCTGAAAGACACCTGTTTTTTCCCGTTTTTAGTACGAACGGGCCAAAAAGGGATGACTTTCAGAAATCGGGAAATAGCTACAAAACTAGAAAATGTCTTATAATTCTGTAAATGCAAAATTTTCAATCTATAGCTGTTTTATACCCTCCAAAATTTCCAAAAAAAAAACCGAAATTATGACAACCTAGCTGCCGACTCTTGAAAATGCTGTAAATTACAGAAAATTTACAGAAATATACGTTTTTGTACACCTTATTGACCGGTGCTGTATTTGTCTTGAATTTTCGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36583</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>241336</contig_pos>
        <strand></strand>
        <context>accaytttca[G/A]aagwctgtag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGTACAATAAAACTTTTTTTTTCAGTTTTTTCTCATTTACACCACTTTCA</left_flank>
        <right_flank>AAGTCTGTAGCTCGGCTGTCAATTGTCGGATCACTTTAAAAATCCTGGAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGGAGACGTCAAACTGGGCGGGGTCCTAGAGACCCTGTTAGTTTGAAGGATTAGAAATCGTCAATGGAAATTGGCTCTTTTTTGTGTTTTGATTGTTTCTTGATCTTCATTTATTTTTAGGGTTTTTTGAAGATAACGCGTCTTCTGATAACGCATGTGGTGATTACGCATGACTTTGGTTTGTTATGAAAATCGAACCACATGCAGTAAGCCGAAAAACTGGAAACGGATATAAAAGGTTCATCGTTACCCAATTTTCAGCTAGTTGTACTTTCGAGATTTCTTTCGAAGACCAATTTTATCAAGATTTTCAGTTTTCTGTAATCTTCCGTTCTGTCTCATTGTTTTTTTTAAAGATTCCTTTAACAAATTCGCCCGGGCAAAATGTCAGGATACTGTAAAACCCAGAAGAAAATGGTTGTGAATTTACAGTGTTGGTCAATAAAATGTACAATAAAACTTTTTTTTTCAGTTTTTTCTCATTTACACCACTTTCAGAAGTCTGTAGCTCGGCTGTCAATTGTCGGATCACTTTAAAAATCCTGGAAGACGTAAAACAGGCCATGATGATGAGTTTTGCAGTCACAGACTTTTCTTAAAGTTCCTAGTTTGTCAGCTATTCAAAGATTTCTGAAAGACACCTGTTTTTTCCCGTTTTTAGTACGAACGGGCCAAAAAGGGATGACTTTCAGAAATCGGGAAATAGCTACAAAACTAGAAAATGTCTTATAATTCTGTAAATGCAAAATTTTCAATCTATAGCTGTTTTATACCCTCCAAAATTTCCAAAAAAAAAACCGAAATTATGACAACCTAGCTGCCGACTCTTGAAAATGCTGTAAATTACAGAAAATTTACAGAAATATACGTTTTTGTACACCTTATTGACCGGTGCTGTATTTGTCTTGAATTTTCGGATACTGTGCATCATCTAGATGCTTTAAAATTATATTTCAATTTTTTAAACTCATATCACTTTTTAATCAATCAAACCACCC</canonical>
            <polymorphic>TTGGGAGACGTCAAACTGGGCGGGGTCCTAGAGACCCTGTTAGTTTGAAGGATTAGAAATCGTCAATGGAAATTGGCTCTTTTTTGTGTTTTGATTGTTTCTTGATCTTCATTTATTTTTAGGGTTTTTTGAAGATAACGCGTCTTCTGATAACGCATGTGGTGATTACGCATGACTTTGGTTTGTTATGAAAATCGAACCACATGCAGTAAGCCGAAAAACTGGAAACGGATATAAAAGGTTCATCGTTACCCAATTTTCAGCTAGTTGTACTTTCGAGATTTCTTTCGAAGACCAATTTTATCAAGATTTTCAGTTTTCTGTAATCTTCCGTTCTGTCTCATTGTTTTTTTTAAAGATTCCTTTAACAAATTCGCCCGGGCAAAATGTCAGGATACTGTAAAACCCAGAAGAAAATGGTTGTGAATTTACAGTGTTGGTCAATAAAATGTACAATAAAACTTTTTTTTTCAGTTTTTTCTCATTTACACCACTTTCARAAGTCTGTAGCTCGGCTGTCAATTGTCGGATCACTTTAAAAATCCTGGAAGACGTAAAACAGGCCATGATGATGAGTTTTGCAGTCACAGACTTTTCTTAAAGTTCCTAGTTTGTCAGCTATTCAAAGATTTCTGAAAGACACCTGTTTTTTCCCGTTTTTAGTACGAACGGGCCAAAAAGGGATGACTTTCAGAAATCGGGAAATAGCTACAAAACTAGAAAATGTCTTATAATTCTGTAAATGCAAAATTTTCAATCTATAGCTGTTTTATACCCTCCAAAATTTCCAAAAAAAAAACCGAAATTATGACAACCTAGCTGCCGACTCTTGAAAATGCTGTAAATTACAGAAAATTTACAGAAATATACGTTTTTGTACACCTTATTGACCGGTGCTGTATTTGTCTTGAATTTTCGGATACTGTGCATCATCTAGATGCTTTAAAATTATATTTCAATTTTTTAAACTCATATCACTTTTTAATCAATCAAACCACCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>351 225 148 106 82 59 29</canonical_bands>
                <polymorphic_bands>380 225 148 106 82 59</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAAGAAAATGGTTGTGAAT</pcr_primer_p1>
		<pcr_primer_p2>TCCGAAAATTCAAGACAAATAC</pcr_primer_p2>
		<pcr_amplicon_size>513</pcr_amplicon_size>
		<canonical_amplicon>CAGAAGAAAATGGTTGTGAATTTACAGTGTTGGTCAATAAAATGTACAATAAAACTTTTTTTTTCAGTTTTTTCTCATTTACACCACTTTCAGAAGTCTGTAGCTCGGCTGTCAATTGTCGGATCACTTTAAAAATCCTGGAAGACGTAAAACAGGCCATGATGATGAGTTTTGCAGTCACAGACTTTTCTTAAAGTTCCTAGTTTGTCAGCTATTCAAAGATTTCTGAAAGACACCTGTTTTTTCCCGTTTTTAGTACGAACGGGCCAAAAAGGGATGACTTTCAGAAATCGGGAAATAGCTACAAAACTAGAAAATGTCTTATAATTCTGTAAATGCAAAATTTTCAATCTATAGCTGTTTTATACCCTCCAAAATTTCCAAAAAAAAAACCGAAATTATGACAACCTAGCTGCCGACTCTTGAAAATGCTGTAAATTACAGAAAATTTACAGAAATATACGTTTTTGTACACCTTATTGACCGGTGCTGTATTTGTCTTGAATTTTCGGA</canonical_amplicon>
		<polymorphic_amplicon>CAGAAGAAAATGGTTGTGAATTTACAGTGTTGGTCAATAAAATGTACAATAAAACTTTTTTTTTCAGTTTTTTCTCATTTACACCACTTTCARAAGTCTGTAGCTCGGCTGTCAATTGTCGGATCACTTTAAAAATCCTGGAAGACGTAAAACAGGCCATGATGATGAGTTTTGCAGTCACAGACTTTTCTTAAAGTTCCTAGTTTGTCAGCTATTCAAAGATTTCTGAAAGACACCTGTTTTTTCCCGTTTTTAGTACGAACGGGCCAAAAAGGGATGACTTTCAGAAATCGGGAAATAGCTACAAAACTAGAAAATGTCTTATAATTCTGTAAATGCAAAATTTTCAATCTATAGCTGTTTTATACCCTCCAAAATTTCCAAAAAAAAAACCGAAATTATGACAACCTAGCTGCCGACTCTTGAAAATGCTGTAAATTACAGAAAATTTACAGAAATATACGTTTTTGTACACCTTATTGACCGGTGCTGTATTTGTCTTGAATTTTCGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36584</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>241340</contig_pos>
        <strand></strand>
        <context>ytttcaraag[T/A]ctgtagctcg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CAATAAAACTTTTTTTTTCAGTTTTTTCTCATTTACACCACTTTCAGAAG</left_flank>
        <right_flank>CTGTAGCTCGGCTGTCAATTGTCGGATCACTTTAAAAATCCTGGAAGACG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGACGTCAAACTGGGCGGGGTCCTAGAGACCCTGTTAGTTTGAAGGATTAGAAATCGTCAATGGAAATTGGCTCTTTTTTGTGTTTTGATTGTTTCTTGATCTTCATTTATTTTTAGGGTTTTTTGAAGATAACGCGTCTTCTGATAACGCATGTGGTGATTACGCATGACTTTGGTTTGTTATGAAAATCGAACCACATGCAGTAAGCCGAAAAACTGGAAACGGATATAAAAGGTTCATCGTTACCCAATTTTCAGCTAGTTGTACTTTCGAGATTTCTTTCGAAGACCAATTTTATCAAGATTTTCAGTTTTCTGTAATCTTCCGTTCTGTCTCATTGTTTTTTTTAAAGATTCCTTTAACAAATTCGCCCGGGCAAAATGTCAGGATACTGTAAAACCCAGAAGAAAATGGTTGTGAATTTACAGTGTTGGTCAATAAAATGTACAATAAAACTTTTTTTTTCAGTTTTTTCTCATTTACACCACTTTCAGAAGTCTGTAGCTCGGCTGTCAATTGTCGGATCACTTTAAAAATCCTGGAAGACGTAAAACAGGCCATGATGATGAGTTTTGCAGTCACAGACTTTTCTTAAAGTTCCTAGTTTGTCAGCTATTCAAAGATTTCTGAAAGACACCTGTTTTTTCCCGTTTTTAGTACGAACGGGCCAAAAAGGGATGACTTTCAGAAATCGGGAAATAGCTACAAAACTAGAAAATGTCTTATAATTCTGTAAATGCAAAATTTTCAATCTATAGCTGTTTTATACCCTCCAAAATTTCCAAAAAAAAAACCGAAATTATGACAACCTAGCTGCCGACTCTTGAAAATGCTGTAAATTACAGAAAATTTACAGAAATATACGTTTTTGTACACCTTATTGACCGGTGCTGTATTTGTCTTGAATTTTCGGATACTGTGCATCATCTAGATGCTTTAAAATTATATTTCAATTTTTTAAACTCATATCACTTTTTAATCAATCAAACCACCCTATC</canonical>
            <polymorphic>GAGACGTCAAACTGGGCGGGGTCCTAGAGACCCTGTTAGTTTGAAGGATTAGAAATCGTCAATGGAAATTGGCTCTTTTTTGTGTTTTGATTGTTTCTTGATCTTCATTTATTTTTAGGGTTTTTTGAAGATAACGCGTCTTCTGATAACGCATGTGGTGATTACGCATGACTTTGGTTTGTTATGAAAATCGAACCACATGCAGTAAGCCGAAAAACTGGAAACGGATATAAAAGGTTCATCGTTACCCAATTTTCAGCTAGTTGTACTTTCGAGATTTCTTTCGAAGACCAATTTTATCAAGATTTTCAGTTTTCTGTAATCTTCCGTTCTGTCTCATTGTTTTTTTTAAAGATTCCTTTAACAAATTCGCCCGGGCAAAATGTCAGGATACTGTAAAACCCAGAAGAAAATGGTTGTGAATTTACAGTGTTGGTCAATAAAATGTACAATAAAACTTTTTTTTTCAGTTTTTTCTCATTTACACCACTTTCAGAAGWCTGTAGCTCGGCTGTCAATTGTCGGATCACTTTAAAAATCCTGGAAGACGTAAAACAGGCCATGATGATGAGTTTTGCAGTCACAGACTTTTCTTAAAGTTCCTAGTTTGTCAGCTATTCAAAGATTTCTGAAAGACACCTGTTTTTTCCCGTTTTTAGTACGAACGGGCCAAAAAGGGATGACTTTCAGAAATCGGGAAATAGCTACAAAACTAGAAAATGTCTTATAATTCTGTAAATGCAAAATTTTCAATCTATAGCTGTTTTATACCCTCCAAAATTTCCAAAAAAAAAACCGAAATTATGACAACCTAGCTGCCGACTCTTGAAAATGCTGTAAATTACAGAAAATTTACAGAAATATACGTTTTTGTACACCTTATTGACCGGTGCTGTATTTGTCTTGAATTTTCGGATACTGTGCATCATCTAGATGCTTTAAAATTATATTTCAATTTTTTAAACTCATATCACTTTTTAATCAATCAAACCACCCTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAAGAAAATGGTTGTGAAT</pcr_primer_p1>
		<pcr_primer_p2>TCCGAAAATTCAAGACAAATAC</pcr_primer_p2>
		<pcr_amplicon_size>513</pcr_amplicon_size>
		<canonical_amplicon>CAGAAGAAAATGGTTGTGAATTTACAGTGTTGGTCAATAAAATGTACAATAAAACTTTTTTTTTCAGTTTTTTCTCATTTACACCACTTTCAGAAGTCTGTAGCTCGGCTGTCAATTGTCGGATCACTTTAAAAATCCTGGAAGACGTAAAACAGGCCATGATGATGAGTTTTGCAGTCACAGACTTTTCTTAAAGTTCCTAGTTTGTCAGCTATTCAAAGATTTCTGAAAGACACCTGTTTTTTCCCGTTTTTAGTACGAACGGGCCAAAAAGGGATGACTTTCAGAAATCGGGAAATAGCTACAAAACTAGAAAATGTCTTATAATTCTGTAAATGCAAAATTTTCAATCTATAGCTGTTTTATACCCTCCAAAATTTCCAAAAAAAAAACCGAAATTATGACAACCTAGCTGCCGACTCTTGAAAATGCTGTAAATTACAGAAAATTTACAGAAATATACGTTTTTGTACACCTTATTGACCGGTGCTGTATTTGTCTTGAATTTTCGGA</canonical_amplicon>
		<polymorphic_amplicon>CAGAAGAAAATGGTTGTGAATTTACAGTGTTGGTCAATAAAATGTACAATAAAACTTTTTTTTTCAGTTTTTTCTCATTTACACCACTTTCAGAAGWCTGTAGCTCGGCTGTCAATTGTCGGATCACTTTAAAAATCCTGGAAGACGTAAAACAGGCCATGATGATGAGTTTTGCAGTCACAGACTTTTCTTAAAGTTCCTAGTTTGTCAGCTATTCAAAGATTTCTGAAAGACACCTGTTTTTTCCCGTTTTTAGTACGAACGGGCCAAAAAGGGATGACTTTCAGAAATCGGGAAATAGCTACAAAACTAGAAAATGTCTTATAATTCTGTAAATGCAAAATTTTCAATCTATAGCTGTTTTATACCCTCCAAAATTTCCAAAAAAAAAACCGAAATTATGACAACCTAGCTGCCGACTCTTGAAAATGCTGTAAATTACAGAAAATTTACAGAAATATACGTTTTTGTACACCTTATTGACCGGTGCTGTATTTGTCTTGAATTTTCGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36585</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>241380</contig_pos>
        <strand></strand>
        <context>ctttaaaaat[C/G]ctggaagacg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTTTCAGAAGTCTGTAGCTCGGCTGTCAATTGTCGGATCACTTTAAAAAT</left_flank>
        <right_flank>CTGGAAGACGTAAAACAGGCCATGATGATGAGTTTTGCAGTCACAGACTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAAGGATTAGAAATCGTCAATGGAAATTGGCTCTTTTTTGTGTTTTGATTGTTTCTTGATCTTCATTTATTTTTAGGGTTTTTTGAAGATAACGCGTCTTCTGATAACGCATGTGGTGATTACGCATGACTTTGGTTTGTTATGAAAATCGAACCACATGCAGTAAGCCGAAAAACTGGAAACGGATATAAAAGGTTCATCGTTACCCAATTTTCAGCTAGTTGTACTTTCGAGATTTCTTTCGAAGACCAATTTTATCAAGATTTTCAGTTTTCTGTAATCTTCCGTTCTGTCTCATTGTTTTTTTTAAAGATTCCTTTAACAAATTCGCCCGGGCAAAATGTCAGGATACTGTAAAACCCAGAAGAAAATGGTTGTGAATTTACAGTGTTGGTCAATAAAATGTACAATAAAACTTTTTTTTTCAGTTTTTTCTCATTTACACCACTTTCAGAAGTCTGTAGCTCGGCTGTCAATTGTCGGATCACTTTAAAAATCCTGGAAGACGTAAAACAGGCCATGATGATGAGTTTTGCAGTCACAGACTTTTCTTAAAGTTCCTAGTTTGTCAGCTATTCAAAGATTTCTGAAAGACACCTGTTTTTTCCCGTTTTTAGTACGAACGGGCCAAAAAGGGATGACTTTCAGAAATCGGGAAATAGCTACAAAACTAGAAAATGTCTTATAATTCTGTAAATGCAAAATTTTCAATCTATAGCTGTTTTATACCCTCCAAAATTTCCAAAAAAAAAACCGAAATTATGACAACCTAGCTGCCGACTCTTGAAAATGCTGTAAATTACAGAAAATTTACAGAAATATACGTTTTTGTACACCTTATTGACCGGTGCTGTATTTGTCTTGAATTTTCGGATACTGTGCATCATCTAGATGCTTTAAAATTATATTTCAATTTTTTAAACTCATATCACTTTTTAATCAATCAAACCACCCTATCAATCAAATGATATCACTTACTATGAGTCAGGTAAAAAAGA</canonical>
            <polymorphic>TTGAAGGATTAGAAATCGTCAATGGAAATTGGCTCTTTTTTGTGTTTTGATTGTTTCTTGATCTTCATTTATTTTTAGGGTTTTTTGAAGATAACGCGTCTTCTGATAACGCATGTGGTGATTACGCATGACTTTGGTTTGTTATGAAAATCGAACCACATGCAGTAAGCCGAAAAACTGGAAACGGATATAAAAGGTTCATCGTTACCCAATTTTCAGCTAGTTGTACTTTCGAGATTTCTTTCGAAGACCAATTTTATCAAGATTTTCAGTTTTCTGTAATCTTCCGTTCTGTCTCATTGTTTTTTTTAAAGATTCCTTTAACAAATTCGCCCGGGCAAAATGTCAGGATACTGTAAAACCCAGAAGAAAATGGTTGTGAATTTACAGTGTTGGTCAATAAAATGTACAATAAAACTTTTTTTTTCAGTTTTTTCTCATTTACACCACTTTCAGAAGTCTGTAGCTCGGCTGTCAATTGTCGGATCACTTTAAAAATSCTGGAAGACGTAAAACAGGCCATGATGATGAGTTTTGCAGTCACAGACTTTTCTTAAAGTTCCTAGTTTGTCAGCTATTCAAAGATTTCTGAAAGACACCTGTTTTTTCCCGTTTTTAGTACGAACGGGCCAAAAAGGGATGACTTTCAGAAATCGGGAAATAGCTACAAAACTAGAAAATGTCTTATAATTCTGTAAATGCAAAATTTTCAATCTATAGCTGTTTTATACCCTCCAAAATTTCCAAAAAAAAAACCGAAATTATGACAACCTAGCTGCCGACTCTTGAAAATGCTGTAAATTACAGAAAATTTACAGAAATATACGTTTTTGTACACCTTATTGACCGGTGCTGTATTTGTCTTGAATTTTCGGATACTGTGCATCATCTAGATGCTTTAAAATTATATTTCAATTTTTTAAACTCATATCACTTTTTAATCAATCAAACCACCCTATCAATCAAATGATATCACTTACTATGAGTCAGGTAAAAAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>499 334 167</canonical_bands>
                <polymorphic_bands>666 334</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAAGAAAATGGTTGTGAAT</pcr_primer_p1>
		<pcr_primer_p2>TCCGAAAATTCAAGACAAATAC</pcr_primer_p2>
		<pcr_amplicon_size>513</pcr_amplicon_size>
		<canonical_amplicon>CAGAAGAAAATGGTTGTGAATTTACAGTGTTGGTCAATAAAATGTACAATAAAACTTTTTTTTTCAGTTTTTTCTCATTTACACCACTTTCAGAAGTCTGTAGCTCGGCTGTCAATTGTCGGATCACTTTAAAAATCCTGGAAGACGTAAAACAGGCCATGATGATGAGTTTTGCAGTCACAGACTTTTCTTAAAGTTCCTAGTTTGTCAGCTATTCAAAGATTTCTGAAAGACACCTGTTTTTTCCCGTTTTTAGTACGAACGGGCCAAAAAGGGATGACTTTCAGAAATCGGGAAATAGCTACAAAACTAGAAAATGTCTTATAATTCTGTAAATGCAAAATTTTCAATCTATAGCTGTTTTATACCCTCCAAAATTTCCAAAAAAAAAACCGAAATTATGACAACCTAGCTGCCGACTCTTGAAAATGCTGTAAATTACAGAAAATTTACAGAAATATACGTTTTTGTACACCTTATTGACCGGTGCTGTATTTGTCTTGAATTTTCGGA</canonical_amplicon>
		<polymorphic_amplicon>CAGAAGAAAATGGTTGTGAATTTACAGTGTTGGTCAATAAAATGTACAATAAAACTTTTTTTTTCAGTTTTTTCTCATTTACACCACTTTCAGAAGTCTGTAGCTCGGCTGTCAATTGTCGGATCACTTTAAAAATSCTGGAAGACGTAAAACAGGCCATGATGATGAGTTTTGCAGTCACAGACTTTTCTTAAAGTTCCTAGTTTGTCAGCTATTCAAAGATTTCTGAAAGACACCTGTTTTTTCCCGTTTTTAGTACGAACGGGCCAAAAAGGGATGACTTTCAGAAATCGGGAAATAGCTACAAAACTAGAAAATGTCTTATAATTCTGTAAATGCAAAATTTTCAATCTATAGCTGTTTTATACCCTCCAAAATTTCCAAAAAAAAAACCGAAATTATGACAACCTAGCTGCCGACTCTTGAAAATGCTGTAAATTACAGAAAATTTACAGAAATATACGTTTTTGTACACCTTATTGACCGGTGCTGTATTTGTCTTGAATTTTCGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36586</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>241507</contig_pos>
        <strand></strand>
        <context>tagtacgaac[G/A]ggccaaaaag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTCAAAGATTTCTGAAAGACACCTGTTTTTTCCCGTTTTTAGTACGAAC</left_flank>
        <right_flank>GGCCAAAAAGGGATGACTTTCAGAAATCGGGAAATAGCTACAAAACTAGA</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGACTTTGGTTTGTTATGAAAATCGAACCACATGCAGTAAGCCGAAAAACTGGAAACGGATATAAAAGGTTCATCGTTACCCAATTTTCAGCTAGTTGTACTTTCGAGATTTCTTTCGAAGACCAATTTTATCAAGATTTTCAGTTTTCTGTAATCTTCCGTTCTGTCTCATTGTTTTTTTTAAAGATTCCTTTAACAAATTCGCCCGGGCAAAATGTCAGGATACTGTAAAACCCAGAAGAAAATGGTTGTGAATTTACAGTGTTGGTCAATAAAATGTACAATAAAACTTTTTTTTTCAGTTTTTTCTCATTTACACCACTTTCAGAAGTCTGTAGCTCGGCTGTCAATTGTCGGATCACTTTAAAAATCCTGGAAGACGTAAAACAGGCCATGATGATGAGTTTTGCAGTCACAGACTTTTCTTAAAGTTCCTAGTTTGTCAGCTATTCAAAGATTTCTGAAAGACACCTGTTTTTTCCCGTTTTTAGTACGAACGGGCCAAAAAGGGATGACTTTCAGAAATCGGGAAATAGCTACAAAACTAGAAAATGTCTTATAATTCTGTAAATGCAAAATTTTCAATCTATAGCTGTTTTATACCCTCCAAAATTTCCAAAAAAAAAACCGAAATTATGACAACCTAGCTGCCGACTCTTGAAAATGCTGTAAATTACAGAAAATTTACAGAAATATACGTTTTTGTACACCTTATTGACCGGTGCTGTATTTGTCTTGAATTTTCGGATACTGTGCATCATCTAGATGCTTTAAAATTATATTTCAATTTTTTAAACTCATATCACTTTTTAATCAATCAAACCACCCTATCAATCAAATGATATCACTTACTATGAGTCAGGTAAAAAAGAAACTCCAAAAAATCACGAAAAAAAAACAAGTTCCACTACCCCGTTATTGAATAGACCTAAATTATAGTTTTCCATGCTCTAAAATGTTTATTTTACTCTTTTTCATTCGAACAAAAACGGAAAAAAA</canonical>
            <polymorphic>ATGACTTTGGTTTGTTATGAAAATCGAACCACATGCAGTAAGCCGAAAAACTGGAAACGGATATAAAAGGTTCATCGTTACCCAATTTTCAGCTAGTTGTACTTTCGAGATTTCTTTCGAAGACCAATTTTATCAAGATTTTCAGTTTTCTGTAATCTTCCGTTCTGTCTCATTGTTTTTTTTAAAGATTCCTTTAACAAATTCGCCCGGGCAAAATGTCAGGATACTGTAAAACCCAGAAGAAAATGGTTGTGAATTTACAGTGTTGGTCAATAAAATGTACAATAAAACTTTTTTTTTCAGTTTTTTCTCATTTACACCACTTTCAGAAGTCTGTAGCTCGGCTGTCAATTGTCGGATCACTTTAAAAATCCTGGAAGACGTAAAACAGGCCATGATGATGAGTTTTGCAGTCACAGACTTTTCTTAAAGTTCCTAGTTTGTCAGCTATTCAAAGATTTCTGAAAGACACCTGTTTTTTCCCGTTTTTAGTACGAACRGGCCAAAAAGGGATGACTTTCAGAAATCGGGAAATAGCTACAAAACTAGAAAATGTCTTATAATTCTGTAAATGCAAAATTTTCAATCTATAGCTGTTTTATACCCTCCAAAATTTCCAAAAAAAAAACCGAAATTATGACAACCTAGCTGCCGACTCTTGAAAATGCTGTAAATTACAGAAAATTTACAGAAATATACGTTTTTGTACACCTTATTGACCGGTGCTGTATTTGTCTTGAATTTTCGGATACTGTGCATCATCTAGATGCTTTAAAATTATATTTCAATTTTTTAAACTCATATCACTTTTTAATCAATCAAACCACCCTATCAATCAAATGATATCACTTACTATGAGTCAGGTAAAAAAGAAACTCCAAAAAATCACGAAAAAAAAACAAGTTCCACTACCCCGTTATTGAATAGACCTAAATTATAGTTTTCCATGCTCTAAAATGTTTATTTTACTCTTTTTCATTCGAACAAAAACGGAAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAAGAAAATGGTTGTGAAT</pcr_primer_p1>
		<pcr_primer_p2>TCCGAAAATTCAAGACAAATAC</pcr_primer_p2>
		<pcr_amplicon_size>513</pcr_amplicon_size>
		<canonical_amplicon>CAGAAGAAAATGGTTGTGAATTTACAGTGTTGGTCAATAAAATGTACAATAAAACTTTTTTTTTCAGTTTTTTCTCATTTACACCACTTTCAGAAGTCTGTAGCTCGGCTGTCAATTGTCGGATCACTTTAAAAATCCTGGAAGACGTAAAACAGGCCATGATGATGAGTTTTGCAGTCACAGACTTTTCTTAAAGTTCCTAGTTTGTCAGCTATTCAAAGATTTCTGAAAGACACCTGTTTTTTCCCGTTTTTAGTACGAACGGGCCAAAAAGGGATGACTTTCAGAAATCGGGAAATAGCTACAAAACTAGAAAATGTCTTATAATTCTGTAAATGCAAAATTTTCAATCTATAGCTGTTTTATACCCTCCAAAATTTCCAAAAAAAAAACCGAAATTATGACAACCTAGCTGCCGACTCTTGAAAATGCTGTAAATTACAGAAAATTTACAGAAATATACGTTTTTGTACACCTTATTGACCGGTGCTGTATTTGTCTTGAATTTTCGGA</canonical_amplicon>
		<polymorphic_amplicon>CAGAAGAAAATGGTTGTGAATTTACAGTGTTGGTCAATAAAATGTACAATAAAACTTTTTTTTTCAGTTTTTTCTCATTTACACCACTTTCAGAAGTCTGTAGCTCGGCTGTCAATTGTCGGATCACTTTAAAAATCCTGGAAGACGTAAAACAGGCCATGATGATGAGTTTTGCAGTCACAGACTTTTCTTAAAGTTCCTAGTTTGTCAGCTATTCAAAGATTTCTGAAAGACACCTGTTTTTTCCCGTTTTTAGTACGAACRGGCCAAAAAGGGATGACTTTCAGAAATCGGGAAATAGCTACAAAACTAGAAAATGTCTTATAATTCTGTAAATGCAAAATTTTCAATCTATAGCTGTTTTATACCCTCCAAAATTTCCAAAAAAAAAACCGAAATTATGACAACCTAGCTGCCGACTCTTGAAAATGCTGTAAATTACAGAAAATTTACAGAAATATACGTTTTTGTACACCTTATTGACCGGTGCTGTATTTGTCTTGAATTTTCGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36587</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>243146</contig_pos>
        <strand>+</strand>
        <context>TCTGGGTTCC[C/T]TTGTTARAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATAGATTATTTTCAACCTATCGTGATATTTTCAGCAACATCTGGGTTCC</left_flank>
        <right_flank>TTGTTAAAAGTTTCTTCCAGAATTTATTCAAAATTTTTTATTCCGATCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGCCGCATTTTTCGAACACGATTTTCTCGAATTGTAGGCCGTTTACCGTGAACACTCTAATAGAGCCGATATATCTCTGTTTTTATGAAAGGTATCAAAACGTCGTCAAATGACAAAATTTTTAGCATAATAACGAAAATATTTTGTCAGTTGACTATTTTTTTCAAATCTTTCACAGAAAAAGAAGGTGCGGGCTCAAAGTTGACGGTTTGAGTGGTTATCTATAAGTGTTTCAGGTAATCTGGAAAGTTGTGGACATAACATTTTTTGTTCCAGAAAGTGTTTGACATAGGACATTCGTTTTAATTCTGAATATAATACAACAATATCATGTTCTAATACGACCTAGAAGTTGAGAAAATCATCTTTAAAAATTTCCACTAAAAACACGATTTTTAGCACTAAAACTGAACCTGGCTAGCGGATAAAAATTTTTAGGGGTGCCTGGATAGATTATTTTCAACCTATCGTGATATTTTCAGCAACATCTGGGTTCCTTTGTTAAAAGTTTCTTCCAGAATTTATTCAAAATTTTTTATTCCGATCTGTCAAAGTGATACTTGATGATTAGAATATTTGTCTGGTGTGCTAGAAAGATTTTCTCAAAAAAAAAGTTGGAATGTTTTTGACGAAACTAATTCACGCATCTATGAAAAACTAATTCGGAGATTTATGGCGCTCATCAGTCTGTTGAAATGATGTCTATTTTGTTGAACGTTCAATATTTTACTGGTTTAGTGATCTTCACATTTCTTAGACTAGCCCTTCCACATGAACACGTTCAGAACTCAAAACTTCGATTCCGCTTCCGGTTTTGTTTTTTCTTTTTGCTTCCCTTCCCTCTCTTCTTCTTTCTGATCCAAAATTTTCCCTTTTAAAAAGTTCACAGGACCAGCACGGACTACCGGAAAGCGAGAGCATGTGAGTAAAGGGGGGCGGAGCTGAAAAAGGCGGGAGGGGCACAGGAAGGAAAAGCGATGAGACATCCCTCTAACGCT</canonical>
            <polymorphic>AAAGCCGCATTTTTCGAACACGATTTTCTCGAATTGTAGGCCGTTTACCGTGAACACTCTAATAGAGCCGATATATCTCTGTTTTTATGAAAGGTATCAAAACGTCGTCAAATGACAAAATTTTTAGCATAATAACGAAAATATTTTGTCAGTTGACTATTTTTTTCAAATCTTTCACAGAAAAAGAAGGTGCGGGCTCAAAGTTGACGGTTTGAGTGGTTATCTATAAGTGTTTCAGGTAATCTGGAAAGTTGTGGACATAACATTTTTTGTTCCAGAAAGTGTTTGACATAGGACATTCGTTTTAATTCTGAATATAATACAACAATATCATGTTCTAATACGACCTAGAAGTTGAGAAAATCATCTTTAAAAATTTCCACTAAAAACACGATTTTTAGCACTAAAACTGAACCTGGCTAGCGGATAAAAATTTTTAGGGGTGCCTGGATAGATTATTTTCAACCTATCGTGATATTTTCAGCAACATCTGGGTTCCYTTGTTAAAAGTTTCTTCCAGAATTTATTCAAAATTTTTTATTCCGATCTGTCAAAGTGATACTTGATGATTAGAATATTTGTCTGGTGTGCTAGAAAGATTTTCTCAAAAAAAAAGTTGGAATGTTTTTGACGAAACTAATTCACGCATCTATGAAAAACTAATTCGGAGATTTATGGCGCTCATCAGTCTGTTGAAATGATGTCTATTTTGTTGAACGTTCAATATTTTACTGGTTTAGTGATCTTCACATTTCTTAGACTAGCCCTTCCACATGAACACGTTCAGAACTCAAAACTTCGATTCCGCTTCCGGTTTTGTTTTTTCTTTTTGCTTCCCTTCCCTCTCTTCTTCTTTCTGATCCAAAATTTTCCCTTTTAAAAAGTTCACAGGACCAGCACGGACTACCGGAAAGCGAGAGCATGTGAGTAAAGGGGGGCGGAGCTGAAAAAGGCGGGAGGGGCACAGGAAGGAAAAGCGATGAGACATCCCTCTAACGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTGGATAGATTATTTTCAACCT</pcr_primer_p1>
		<pcr_primer_p2>CCATAAATCTCCGAATTAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>CCTGGATAGATTATTTTCAACCTATCGTGATATTTTCAGCAACATCTGGGTTCCTTTGTTAAAAGTTTCTTCCAGAATTTATTCAAAATTTTTTATTCCGATCTGTCAAAGTGATACTTGATGATTAGAATATTTGTCTGGTGTGCTAGAAAGATTTTCTCAAAAAAAAAGTTGGAATGTTTTTGACGAAACTAATTCACGCATCTATGAAAAACTAATTCGGAGATTTATGG</canonical_amplicon>
		<polymorphic_amplicon>CCTGGATAGATTATTTTCAACCTATCGTGATATTTTCAGCAACATCTGGGTTCCYTTGTTAAAAGTTTCTTCCAGAATTTATTCAAAATTTTTTATTCCGATCTGTCAAAGTGATACTTGATGATTAGAATATTTGTCTGGTGTGCTAGAAAGATTTTCTCAAAAAAAAAGTTGGAATGTTTTTGACGAAACTAATTCACGCATCTATGAAAAACTAATTCGGAGATTTATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36588</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>243232</contig_pos>
        <strand>+</strand>
        <context>TATTTGTCTG[C/G]TGTGCTAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTATTCCGATCTGTCAAAGTGATACTTGATGATTAGAATATTTGTCTG</left_flank>
        <right_flank>TGTGCTAGAAAGATTTTCTCAAAAAAAAAGTTGGAATGTTTTTGACGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAAAGGTATCAAAACGTCGTCAAATGACAAAATTTTTAGCATAATAACGAAAATATTTTGTCAGTTGACTATTTTTTTCAAATCTTTCACAGAAAAAGAAGGTGCGGGCTCAAAGTTGACGGTTTGAGTGGTTATCTATAAGTGTTTCAGGTAATCTGGAAAGTTGTGGACATAACATTTTTTGTTCCAGAAAGTGTTTGACATAGGACATTCGTTTTAATTCTGAATATAATACAACAATATCATGTTCTAATACGACCTAGAAGTTGAGAAAATCATCTTTAAAAATTTCCACTAAAAACACGATTTTTAGCACTAAAACTGAACCTGGCTAGCGGATAAAAATTTTTAGGGGTGCCTGGATAGATTATTTTCAACCTATCGTGATATTTTCAGCAACATCTGGGTTCCTTTGTTAAAAGTTTCTTCCAGAATTTATTCAAAATTTTTTATTCCGATCTGTCAAAGTGATACTTGATGATTAGAATATTTGTCTGGTGTGCTAGAAAGATTTTCTCAAAAAAAAAGTTGGAATGTTTTTGACGAAACTAATTCACGCATCTATGAAAAACTAATTCGGAGATTTATGGCGCTCATCAGTCTGTTGAAATGATGTCTATTTTGTTGAACGTTCAATATTTTACTGGTTTAGTGATCTTCACATTTCTTAGACTAGCCCTTCCACATGAACACGTTCAGAACTCAAAACTTCGATTCCGCTTCCGGTTTTGTTTTTTCTTTTTGCTTCCCTTCCCTCTCTTCTTCTTTCTGATCCAAAATTTTCCCTTTTAAAAAGTTCACAGGACCAGCACGGACTACCGGAAAGCGAGAGCATGTGAGTAAAGGGGGGCGGAGCTGAAAAAGGCGGGAGGGGCACAGGAAGGAAAAGCGATGAGACATCCCTCTAACGCTACTTTGCTTCTTTCTCTCCCTAATTTCTAAAAGTCCCTTTCTCTCTCTCTCTCTATCAACCCACGTCCAAAAAAAATGGTTGACGG</canonical>
            <polymorphic>ATGAAAGGTATCAAAACGTCGTCAAATGACAAAATTTTTAGCATAATAACGAAAATATTTTGTCAGTTGACTATTTTTTTCAAATCTTTCACAGAAAAAGAAGGTGCGGGCTCAAAGTTGACGGTTTGAGTGGTTATCTATAAGTGTTTCAGGTAATCTGGAAAGTTGTGGACATAACATTTTTTGTTCCAGAAAGTGTTTGACATAGGACATTCGTTTTAATTCTGAATATAATACAACAATATCATGTTCTAATACGACCTAGAAGTTGAGAAAATCATCTTTAAAAATTTCCACTAAAAACACGATTTTTAGCACTAAAACTGAACCTGGCTAGCGGATAAAAATTTTTAGGGGTGCCTGGATAGATTATTTTCAACCTATCGTGATATTTTCAGCAACATCTGGGTTCCTTTGTTAAAAGTTTCTTCCAGAATTTATTCAAAATTTTTTATTCCGATCTGTCAAAGTGATACTTGATGATTAGAATATTTGTCTGSTGTGCTAGAAAGATTTTCTCAAAAAAAAAGTTGGAATGTTTTTGACGAAACTAATTCACGCATCTATGAAAAACTAATTCGGAGATTTATGGCGCTCATCAGTCTGTTGAAATGATGTCTATTTTGTTGAACGTTCAATATTTTACTGGTTTAGTGATCTTCACATTTCTTAGACTAGCCCTTCCACATGAACACGTTCAGAACTCAAAACTTCGATTCCGCTTCCGGTTTTGTTTTTTCTTTTTGCTTCCCTTCCCTCTCTTCTTCTTTCTGATCCAAAATTTTCCCTTTTAAAAAGTTCACAGGACCAGCACGGACTACCGGAAAGCGAGAGCATGTGAGTAAAGGGGGGCGGAGCTGAAAAAGGCGGGAGGGGCACAGGAAGGAAAAGCGATGAGACATCCCTCTAACGCTACTTTGCTTCTTTCTCTCCCTAATTTCTAAAAGTCCCTTTCTCTCTCTCTCTCTATCAACCCACGTCCAAAAAAAATGGTTGACGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>108 99 98 98 91 84 54 42 38 30 29 28 27 26 24 23 23 15 14 12 11 9 8 7 2</canonical_bands>
                <polymorphic_bands>108 99 98 98 91 84 54 42 38 32 29 28 27 26 24 23 23 15 14 12 11 9 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGATATTTTCAGCAACATCTG</pcr_primer_p1>
		<pcr_primer_p2>ACGTTCAACAAAATAGACATCAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTGATATTTTCAGCAACATCTGGGTTCCTTTGTTAAAAGTTTCTTCCAGAATTTATTCAAAATTTTTTATTCCGATCTGTCAAAGTGATACTTGATGATTAGAATATTTGTCTGGTGTGCTAGAAAGATTTTCTCAAAAAAAAAGTTGGAATGTTTTTGACGAAACTAATTCACGCATCTATGAAAAACTAATTCGGAGATTTATGGCGCTCATCAGTCTGTTGAAATGATGTCTATTTTGTTGAACGT</canonical_amplicon>
		<polymorphic_amplicon>GTGATATTTTCAGCAACATCTGGGTTCCTTTGTTAAAAGTTTCTTCCAGAATTTATTCAAAATTTTTTATTCCGATCTGTCAAAGTGATACTTGATGATTAGAATATTTGTCTGSTGTGCTAGAAAGATTTTCTCAAAAAAAAAGTTGGAATGTTTTTGACGAAACTAATTCACGCATCTATGAAAAACTAATTCGGAGATTTATGGCGCTCATCAGTCTGTTGAAATGATGTCTATTTTGTTGAACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36589</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>269098</contig_pos>
        <strand>+</strand>
        <context>TGTATATCTA[C/T]TTTYATTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCTCTATCGCTCAACTATTATTGATCCGTTTCTCCAACTGTATATCTA</left_flank>
        <right_flank>TTTTATTTTTCCTTTTTTTTCAGGTTGTATCTTCACTCAAACTTGTCCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCAACGCTTTTTTGCCACTTTTACGCGTTTTTTATTGCTTTTGGTGGGTGATTTTGCTTGAAAACTGCTTTAGTTGATACCGTCTTGGTTTCACAAGTGATCTGAAGATTTCTGAGAACTTGAAAAAGGATGTTTCGGTAGTTTAGATTGTTTTCTCTAGCAGGAACTCTTTATTTTTTTCTGCAAACCCCTTTGAAAAAGTATTAAAATCTGAAATTAGGGTTTTGAACTATTCAATGTTCATTTCAAAACATGTTTCTTTCTAGTCTTATAACCTTCGCCAGTGAAAAAAGCCTGACCTTATGAAAAACCGGCTCTAATAATCAACATCATTCATTTTTCTTTGTCTCTCCACCATCTTGTTATTATTTTTATTGATTTTTCAGACCTCTCCTCCCGCTCTCTGTTCAGCCCACTCGCTGAGCGAGAAGATTGTGTTTACATTCGATTCTCTATCGCTCAACTATTATTGATCCGTTTCTCCAACTGTATATCTATTTTTATTTTTCCTTTTTTTTCAGGTTGTATCTTCACTCAAACTTGTCCCCGTTTTTCTTCCGGGCCGTGCTGGCTCCCGTCCGGACTGCCCCCCTATGAATGGCAAAACAGGTACGGTCTATCACGCGGGGTCATTATAGAGAGGGATAAATGGATATATTATCCCGAATAGTCAAAGTCAACAACAACCACAAGTTTGAAATTTCGTTTTGAAATCTTCGGAAGAAAAGAATAAACTTTGTTCCTAGTCCGCATAACCACCTGTTGACCTGTGGGTTTCAAACGCTCTTTGCTGTTTGGCACGTTTTGTCAATACGCCTATTGATCAGTTGTTTGTCATGATCTTTAATCTATATGTACGCTACGTCAGATATTATTCATGATTTCAATTTCTACAAGAAGGTCAGATGAGAAAGTTAGTTTTATTTGAAGAATCAAAACCACTTGGCAATCTTTATAGACATTGAAATCCTTTTAAGATAAGATAAAAAAGAAGCAAA</canonical>
            <polymorphic>ATCCAACGCTTTTTTGCCACTTTTACGCGTTTTTTATTGCTTTTGGTGGGTGATTTTGCTTGAAAACTGCTTTAGTTGATACCGTCTTGGTTTCACAAGTGATCTGAAGATTTCTGAGAACTTGAAAAAGGATGTTTCGGTAGTTTAGATTGTTTTCTCTAGCAGGAACTCTTTATTTTTTTCTGCAAACCCCTTTGAAAAAGTATTAAAATCTGAAATTAGGGTTTTGAACTATTCAATGTTCATTTCAAAACATGTTTCTTTCTAGTCTTATAACCTTCGCCAGTGAAAAAAGCCTGACCTTATGAAAAACCGGCTCTAATAATCAACATCATTCATTTTTCTTTGTCTCTCCACCATCTTGTTATTATTTTTATTGATTTTTCAGACCTCTCCTCCCGCTCTCTGTTCAGCCCACTCGCTGAGCGAGAAGATTGTGTTTACATTCGATTCTCTATCGCTCAACTATTATTGATCCGTTTCTCCAACTGTATATCTAYTTTTATTTTTCCTTTTTTTTCAGGTTGTATCTTCACTCAAACTTGTCCCCGTTTTTCTTCCGGGCCGTGCTGGCTCCCGTCCGGACTGCCCCCCTATGAATGGCAAAACAGGTACGGTCTATCACGCGGGGTCATTATAGAGAGGGATAAATGGATATATTATCCCGAATAGTCAAAGTCAACAACAACCACAAGTTTGAAATTTCGTTTTGAAATCTTCGGAAGAAAAGAATAAACTTTGTTCCTAGTCCGCATAACCACCTGTTGACCTGTGGGTTTCAAACGCTCTTTGCTGTTTGGCACGTTTTGTCAATACGCCTATTGATCAGTTGTTTGTCATGATCTTTAATCTATATGTACGCTACGTCAGATATTATTCATGATTTCAATTTCTACAAGAAGGTCAGATGAGAAAGTTAGTTTTATTTGAAGAATCAAAACCACTTGGCAATCTTTATAGACATTGAAATCCTTTTAAGATAAGATAAAAAAGAAGCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGATTGTGTTTACATTCGATTC</pcr_primer_p1>
		<pcr_primer_p2>GACTTTGACTATTCGGGATAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGATTGTGTTTACATTCGATTCTCTATCGCTCAACTATTATTGATCCGTTTCTCCAACTGTATATCTATTTTTATTTTTCCTTTTTTTTCAGGTTGTATCTTCACTCAAACTTGTCCCCGTTTTTCTTCCGGGCCGTGCTGGCTCCCGTCCGGACTGCCCCCCTATGAATGGCAAAACAGGTACGGTCTATCACGCGGGGTCATTATAGAGAGGGATAAATGGATATATTATCCCGAATAGTCAAAGTC</canonical_amplicon>
		<polymorphic_amplicon>AAGATTGTGTTTACATTCGATTCTCTATCGCTCAACTATTATTGATCCGTTTCTCCAACTGTATATCTAYTTTTATTTTTCCTTTTTTTTCAGGTTGTATCTTCACTCAAACTTGTCCCCGTTTTTCTTCCGGGCCGTGCTGGCTCCCGTCCGGACTGCCCCCCTATGAATGGCAAAACAGGTACGGTCTATCACGCGGGGTCATTATAGAGAGGGATAAATGGATATATTATCCCGAATAGTCAAAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36590</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>270173</contig_pos>
        <strand></strand>
        <context>atctgtttta[T/C]acccttccaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATCTTTGGAAAATTCTATAAATGGTAATTTTTAATCTAGATCTGTTTTA</left_flank>
        <right_flank>ACCCTTCCAAATTTTCAAAATGATCGGAAACTCGATAGCCAAGCTCTAGG</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTCTTATCGCACCGATTGATGTCTTCGTGCACTTCTATCGTCTCCTGAGAACTCTCTATGGTCGTTTTCAGAACCACAAAACATGACGGTTGCCAGTCAGTCCATTGAAGAATTCAAAGAATGTTTATATCACGTGAGTTCATTCTCTTTTTTTCAAAATTTTTAACATACAGTAGTGTCAATAAGATTAGAAAAACGTCCTTTTCAGCTAATTTTTGGCCATTTTGACAATTTTCAAGTGTCTAGTGCTCGGCTGTAAACTTTCCGATAACTTTGAAATTTTCAACGGATGTAAAACGAACCTAGTTTGAAAATTTTGCATGCTCAATATTTTTTTTAAATTCCTAATTTTGAGCTATTAGCAGATTTCTGAAAGACACGCATTTCTGCACTGTGAAGGTGAATAAGCAGGCGTCTTCTAGAAAACGCGAATAATTGAAAAACTAGGAATCTTTGGAAAATTCTATAAATGGTAATTTTTAATCTAGATCTGTTTTATACCCTTCCAAATTTTCAAAATGATCGGAAACTCGATAGCCAAGCTCTAGGCTTCTGAAAATGATCGAAGTTACCAAACATCAACAATAATTGAGAACAAAAAAAATTTTAGATGCAAGAGACGCGGAAGTTGTTGACCATGCAGTTGCTGGCAACTGGGAAAATCACTTCGGCAGAGATACAAATTCTAAAGAGAACACTAGAGGTAATCGCTTGGATCACTATATATCCGTTTATTTTGAATTTCAGGAAATGCAAGACGAGCGGACAACAGACTTCTACATTCGACACATTCACTCAAGGGGAGCCACATTTGCCATTAACATCAGAGATGAGATTTTGGGACTTAAGAAGGATTTTTTGTTCTTGGAGAACTTTGCGTCAGAGTGTGAAAGCGAAGAATCGTTTACGAATAGACTAAAGCTGTGTGACCTGCCAGGATTGTTATCCAATAATCAGATCGATATTCGTCTCATGAATGGATTCGCAGAGGAGGTTGCA</canonical>
            <polymorphic>AGTCTTATCGCACCGATTGATGTCTTCGTGCACTTCTATCGTCTCCTGAGAACTCTCTATGGTCGTTTTCAGAACCACAAAACATGACGGTTGCCAGTCAGTCCATTGAAGAATTCAAAGAATGTTTATATCACGTGAGTTCATTCTCTTTTTTTCAAAATTTTTAACATACAGTAGTGTCAATAAGATTAGAAAAACGTCCTTTTCAGCTAATTTTTGGCCATTTTGACAATTTTCAAGTGTCTAGTGCTCGGCTGTAAACTTTCCGATAACTTTGAAATTTTCAACGGATGTAAAACGAACCTAGTTTGAAAATTTTGCATGCTCAATATTTTTTTTAAATTCCTAATTTTGAGCTATTAGCAGATTTCTGAAAGACACGCATTTCTGCACTGTGAAGGTGAATAAGCAGGCGTCTTCTAGAAAACGCGAATAATTGAAAAACTAGGAATCTTTGGAAAATTCTATAAATGGTAATTTTTAATCTAGATCTGTTTTAYACCCTTCCAAATTTTCAAAATGATCGGAAACTCGATAGCCAAGCTCTAGGCTTCTGAAAATGATCGAAGTTACCAAACATCAACAATAATTGAGAACAAAAAAAATTTTAGATGCAAGAGACGCGGAAGTTGTTGACCATGCAGTTGCTGGCAACTGGGAAAATCACTTCGGCAGAGATACAAATTCTAAAGAGAACACTAGAGGTAATCGCTTGGATCACTATATATCCGTTTATTTTGAATTTCAGGAAATGCAAGACGAGCGGACAACAGACTTCTACATTCGACACATTCACTCAAGGGGAGCCACATTTGCCATTAACATCAGAGATGAGATTTTGGGACTTAAGAAGGATTTTTTGTTCTTGGAGAACTTTGCGTCAGAGTGTGAAAGCGAAGAATCGTTTACGAATAGACTAAAGCTGTGTGACCTGCCAGGATTGTTATCCAATAATCAGATCGATATTCGTCTCATGAATGGATTCGCAGAGGAGGTTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACGTGAGTTCATTCTCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GCGTCTCTTGCATCTAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>493</pcr_amplicon_size>
		<canonical_amplicon>CACGTGAGTTCATTCTCTTTTTTTCAAAATTTTTAACATACAGTAGTGTCAATAAGATTAGAAAAACGTCCTTTTCAGCTAATTTTTGGCCATTTTGACAATTTTCAAGTGTCTAGTGCTCGGCTGTAAACTTTCCGATAACTTTGAAATTTTCAACGGATGTAAAACGAACCTAGTTTGAAAATTTTGCATGCTCAATATTTTTTTTAAATTCCTAATTTTGAGCTATTAGCAGATTTCTGAAAGACACGCATTTCTGCACTGTGAAGGTGAATAAGCAGGCGTCTTCTAGAAAACGCGAATAATTGAAAAACTAGGAATCTTTGGAAAATTCTATAAATGGTAATTTTTAATCTAGATCTGTTTTATACCCTTCCAAATTTTCAAAATGATCGGAAACTCGATAGCCAAGCTCTAGGCTTCTGAAAATGATCGAAGTTACCAAACATCAACAATAATTGAGAACAAAAAAAATTTTAGATGCAAGAGACGC</canonical_amplicon>
		<polymorphic_amplicon>CACGTGAGTTCATTCTCTTTTTTTCAAAATTTTTAACATACAGTAGTGTCAATAAGATTAGAAAAACGTCCTTTTCAGCTAATTTTTGGCCATTTTGACAATTTTCAAGTGTCTAGTGCTCGGCTGTAAACTTTCCGATAACTTTGAAATTTTCAACGGATGTAAAACGAACCTAGTTTGAAAATTTTGCATGCTCAATATTTTTTTTAAATTCCTAATTTTGAGCTATTAGCAGATTTCTGAAAGACACGCATTTCTGCACTGTGAAGGTGAATAAGCAGGCGTCTTCTAGAAAACGCGAATAATTGAAAAACTAGGAATCTTTGGAAAATTCTATAAATGGTAATTTTTAATCTAGATCTGTTTTAYACCCTTCCAAATTTTCAAAATGATCGGAAACTCGATAGCCAAGCTCTAGGCTTCTGAAAATGATCGAAGTTACCAAACATCAACAATAATTGAGAACAAAAAAAATTTTAGATGCAAGAGACGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36591</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>270239</contig_pos>
        <strand></strand>
        <context>gaaaatgatc[G/A]aagttaccaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAAAATGATCGGAAACTCGATAGCCAAGCTCTAGGCTTCTGAAAATGATC</left_flank>
        <right_flank>AAGTTACCAAACATCAACAATAATTGAGAACAAAAAAAATTTTAGATGCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCAGAACCACAAAACATGACGGTTGCCAGTCAGTCCATTGAAGAATTCAAAGAATGTTTATATCACGTGAGTTCATTCTCTTTTTTTCAAAATTTTTAACATACAGTAGTGTCAATAAGATTAGAAAAACGTCCTTTTCAGCTAATTTTTGGCCATTTTGACAATTTTCAAGTGTCTAGTGCTCGGCTGTAAACTTTCCGATAACTTTGAAATTTTCAACGGATGTAAAACGAACCTAGTTTGAAAATTTTGCATGCTCAATATTTTTTTTAAATTCCTAATTTTGAGCTATTAGCAGATTTCTGAAAGACACGCATTTCTGCACTGTGAAGGTGAATAAGCAGGCGTCTTCTAGAAAACGCGAATAATTGAAAAACTAGGAATCTTTGGAAAATTCTATAAATGGTAATTTTTAATCTAGATCTGTTTTATACCCTTCCAAATTTTCAAAATGATCGGAAACTCGATAGCCAAGCTCTAGGCTTCTGAAAATGATCGAAGTTACCAAACATCAACAATAATTGAGAACAAAAAAAATTTTAGATGCAAGAGACGCGGAAGTTGTTGACCATGCAGTTGCTGGCAACTGGGAAAATCACTTCGGCAGAGATACAAATTCTAAAGAGAACACTAGAGGTAATCGCTTGGATCACTATATATCCGTTTATTTTGAATTTCAGGAAATGCAAGACGAGCGGACAACAGACTTCTACATTCGACACATTCACTCAAGGGGAGCCACATTTGCCATTAACATCAGAGATGAGATTTTGGGACTTAAGAAGGATTTTTTGTTCTTGGAGAACTTTGCGTCAGAGTGTGAAAGCGAAGAATCGTTTACGAATAGACTAAAGCTGTGTGACCTGCCAGGATTGTTATCCAATAATCAGATCGATATTCGTCTCATGAATGGATTCGCAGAGGAGGTTGCAAAATGTAAAGAATTCTTGATGGATTTGATCACGATTGAGTCTGATGGAATTAAGCCACTTTTTATC</canonical>
            <polymorphic>TTTCAGAACCACAAAACATGACGGTTGCCAGTCAGTCCATTGAAGAATTCAAAGAATGTTTATATCACGTGAGTTCATTCTCTTTTTTTCAAAATTTTTAACATACAGTAGTGTCAATAAGATTAGAAAAACGTCCTTTTCAGCTAATTTTTGGCCATTTTGACAATTTTCAAGTGTCTAGTGCTCGGCTGTAAACTTTCCGATAACTTTGAAATTTTCAACGGATGTAAAACGAACCTAGTTTGAAAATTTTGCATGCTCAATATTTTTTTTAAATTCCTAATTTTGAGCTATTAGCAGATTTCTGAAAGACACGCATTTCTGCACTGTGAAGGTGAATAAGCAGGCGTCTTCTAGAAAACGCGAATAATTGAAAAACTAGGAATCTTTGGAAAATTCTATAAATGGTAATTTTTAATCTAGATCTGTTTTATACCCTTCCAAATTTTCAAAATGATCGGAAACTCGATAGCCAAGCTCTAGGCTTCTGAAAATGATCRAAGTTACCAAACATCAACAATAATTGAGAACAAAAAAAATTTTAGATGCAAGAGACGCGGAAGTTGTTGACCATGCAGTTGCTGGCAACTGGGAAAATCACTTCGGCAGAGATACAAATTCTAAAGAGAACACTAGAGGTAATCGCTTGGATCACTATATATCCGTTTATTTTGAATTTCAGGAAATGCAAGACGAGCGGACAACAGACTTCTACATTCGACACATTCACTCAAGGGGAGCCACATTTGCCATTAACATCAGAGATGAGATTTTGGGACTTAAGAAGGATTTTTTGTTCTTGGAGAACTTTGCGTCAGAGTGTGAAAGCGAAGAATCGTTTACGAATAGACTAAAGCTGTGTGACCTGCCAGGATTGTTATCCAATAATCAGATCGATATTCGTCTCATGAATGGATTCGCAGAGGAGGTTGCAAAATGTAAAGAATTCTTGATGGATTTGATCACGATTGAGTCTGATGGAATTAAGCCACTTTTTATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>467 220 176 105 32</canonical_bands>
                <polymorphic_bands>467 252 176 105</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACGTGAGTTCATTCTCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GCGTCTCTTGCATCTAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>493</pcr_amplicon_size>
		<canonical_amplicon>CACGTGAGTTCATTCTCTTTTTTTCAAAATTTTTAACATACAGTAGTGTCAATAAGATTAGAAAAACGTCCTTTTCAGCTAATTTTTGGCCATTTTGACAATTTTCAAGTGTCTAGTGCTCGGCTGTAAACTTTCCGATAACTTTGAAATTTTCAACGGATGTAAAACGAACCTAGTTTGAAAATTTTGCATGCTCAATATTTTTTTTAAATTCCTAATTTTGAGCTATTAGCAGATTTCTGAAAGACACGCATTTCTGCACTGTGAAGGTGAATAAGCAGGCGTCTTCTAGAAAACGCGAATAATTGAAAAACTAGGAATCTTTGGAAAATTCTATAAATGGTAATTTTTAATCTAGATCTGTTTTATACCCTTCCAAATTTTCAAAATGATCGGAAACTCGATAGCCAAGCTCTAGGCTTCTGAAAATGATCGAAGTTACCAAACATCAACAATAATTGAGAACAAAAAAAATTTTAGATGCAAGAGACGC</canonical_amplicon>
		<polymorphic_amplicon>CACGTGAGTTCATTCTCTTTTTTTCAAAATTTTTAACATACAGTAGTGTCAATAAGATTAGAAAAACGTCCTTTTCAGCTAATTTTTGGCCATTTTGACAATTTTCAAGTGTCTAGTGCTCGGCTGTAAACTTTCCGATAACTTTGAAATTTTCAACGGATGTAAAACGAACCTAGTTTGAAAATTTTGCATGCTCAATATTTTTTTTAAATTCCTAATTTTGAGCTATTAGCAGATTTCTGAAAGACACGCATTTCTGCACTGTGAAGGTGAATAAGCAGGCGTCTTCTAGAAAACGCGAATAATTGAAAAACTAGGAATCTTTGGAAAATTCTATAAATGGTAATTTTTAATCTAGATCTGTTTTATACCCTTCCAAATTTTCAAAATGATCGGAAACTCGATAGCCAAGCTCTAGGCTTCTGAAAATGATCRAAGTTACCAAACATCAACAATAATTGAGAACAAAAAAAATTTTAGATGCAAGAGACGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36592</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>270258</contig_pos>
        <strand></strand>
        <context>aaacatcaac[A/G]ATAATTGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAGCCAAGCTCTAGGCTTCTGAAAATGATCGAAGTTACCAAACATCAAC</left_flank>
        <right_flank>ATAATTGAGAACAAAAAAAATTTTAGATGCAAGAGACGCGGAAGTTGTTG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGGTTGCCAGTCAGTCCATTGAAGAATTCAAAGAATGTTTATATCACGTGAGTTCATTCTCTTTTTTTCAAAATTTTTAACATACAGTAGTGTCAATAAGATTAGAAAAACGTCCTTTTCAGCTAATTTTTGGCCATTTTGACAATTTTCAAGTGTCTAGTGCTCGGCTGTAAACTTTCCGATAACTTTGAAATTTTCAACGGATGTAAAACGAACCTAGTTTGAAAATTTTGCATGCTCAATATTTTTTTTAAATTCCTAATTTTGAGCTATTAGCAGATTTCTGAAAGACACGCATTTCTGCACTGTGAAGGTGAATAAGCAGGCGTCTTCTAGAAAACGCGAATAATTGAAAAACTAGGAATCTTTGGAAAATTCTATAAATGGTAATTTTTAATCTAGATCTGTTTTATACCCTTCCAAATTTTCAAAATGATCGGAAACTCGATAGCCAAGCTCTAGGCTTCTGAAAATGATCGAAGTTACCAAACATCAACAATAATTGAGAACAAAAAAAATTTTAGATGCAAGAGACGCGGAAGTTGTTGACCATGCAGTTGCTGGCAACTGGGAAAATCACTTCGGCAGAGATACAAATTCTAAAGAGAACACTAGAGGTAATCGCTTGGATCACTATATATCCGTTTATTTTGAATTTCAGGAAATGCAAGACGAGCGGACAACAGACTTCTACATTCGACACATTCACTCAAGGGGAGCCACATTTGCCATTAACATCAGAGATGAGATTTTGGGACTTAAGAAGGATTTTTTGTTCTTGGAGAACTTTGCGTCAGAGTGTGAAAGCGAAGAATCGTTTACGAATAGACTAAAGCTGTGTGACCTGCCAGGATTGTTATCCAATAATCAGATCGATATTCGTCTCATGAATGGATTCGCAGAGGAGGTTGCAAAATGTAAAGAATTCTTGATGGATTTGATCACGATTGAGTCTGATGGAATTAAGCCACTTTTTATCACCGACTGGGATGGAACCA</canonical>
            <polymorphic>GACGGTTGCCAGTCAGTCCATTGAAGAATTCAAAGAATGTTTATATCACGTGAGTTCATTCTCTTTTTTTCAAAATTTTTAACATACAGTAGTGTCAATAAGATTAGAAAAACGTCCTTTTCAGCTAATTTTTGGCCATTTTGACAATTTTCAAGTGTCTAGTGCTCGGCTGTAAACTTTCCGATAACTTTGAAATTTTCAACGGATGTAAAACGAACCTAGTTTGAAAATTTTGCATGCTCAATATTTTTTTTAAATTCCTAATTTTGAGCTATTAGCAGATTTCTGAAAGACACGCATTTCTGCACTGTGAAGGTGAATAAGCAGGCGTCTTCTAGAAAACGCGAATAATTGAAAAACTAGGAATCTTTGGAAAATTCTATAAATGGTAATTTTTAATCTAGATCTGTTTTATACCCTTCCAAATTTTCAAAATGATCGGAAACTCGATAGCCAAGCTCTAGGCTTCTGAAAATGATCGAAGTTACCAAACATCAACRATAATTGAGAACAAAAAAAATTTTAGATGCAAGAGACGCGGAAGTTGTTGACCATGCAGTTGCTGGCAACTGGGAAAATCACTTCGGCAGAGATACAAATTCTAAAGAGAACACTAGAGGTAATCGCTTGGATCACTATATATCCGTTTATTTTGAATTTCAGGAAATGCAAGACGAGCGGACAACAGACTTCTACATTCGACACATTCACTCAAGGGGAGCCACATTTGCCATTAACATCAGAGATGAGATTTTGGGACTTAAGAAGGATTTTTTGTTCTTGGAGAACTTTGCGTCAGAGTGTGAAAGCGAAGAATCGTTTACGAATAGACTAAAGCTGTGTGACCTGCCAGGATTGTTATCCAATAATCAGATCGATATTCGTCTCATGAATGGATTCGCAGAGGAGGTTGCAAAATGTAAAGAATTCTTGATGGATTTGATCACGATTGAGTCTGATGGAATTAAGCCACTTTTTATCACCGACTGGGATGGAACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACGTGAGTTCATTCTCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTGCATGGTCAACAACTTC</pcr_primer_p2>
		<pcr_amplicon_size>514</pcr_amplicon_size>
		<canonical_amplicon>CACGTGAGTTCATTCTCTTTTTTTCAAAATTTTTAACATACAGTAGTGTCAATAAGATTAGAAAAACGTCCTTTTCAGCTAATTTTTGGCCATTTTGACAATTTTCAAGTGTCTAGTGCTCGGCTGTAAACTTTCCGATAACTTTGAAATTTTCAACGGATGTAAAACGAACCTAGTTTGAAAATTTTGCATGCTCAATATTTTTTTTAAATTCCTAATTTTGAGCTATTAGCAGATTTCTGAAAGACACGCATTTCTGCACTGTGAAGGTGAATAAGCAGGCGTCTTCTAGAAAACGCGAATAATTGAAAAACTAGGAATCTTTGGAAAATTCTATAAATGGTAATTTTTAATCTAGATCTGTTTTATACCCTTCCAAATTTTCAAAATGATCGGAAACTCGATAGCCAAGCTCTAGGCTTCTGAAAATGATCGAAGTTACCAAACATCAACAATAATTGAGAACAAAAAAAATTTTAGATGCAAGAGACGCGGAAGTTGTTGACCATGCAGT</canonical_amplicon>
		<polymorphic_amplicon>CACGTGAGTTCATTCTCTTTTTTTCAAAATTTTTAACATACAGTAGTGTCAATAAGATTAGAAAAACGTCCTTTTCAGCTAATTTTTGGCCATTTTGACAATTTTCAAGTGTCTAGTGCTCGGCTGTAAACTTTCCGATAACTTTGAAATTTTCAACGGATGTAAAACGAACCTAGTTTGAAAATTTTGCATGCTCAATATTTTTTTTAAATTCCTAATTTTGAGCTATTAGCAGATTTCTGAAAGACACGCATTTCTGCACTGTGAAGGTGAATAAGCAGGCGTCTTCTAGAAAACGCGAATAATTGAAAAACTAGGAATCTTTGGAAAATTCTATAAATGGTAATTTTTAATCTAGATCTGTTTTATACCCTTCCAAATTTTCAAAATGATCGGAAACTCGATAGCCAAGCTCTAGGCTTCTGAAAATGATCGAAGTTACCAAACATCAACRATAATTGAGAACAAAAAAAATTTTAGATGCAAGAGACGCGGAAGTTGTTGACCATGCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36593</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>319191</contig_pos>
        <strand></strand>
        <context>CACAAAAACT[T/G]TTGTCACCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GGCTCACTTCACAAACCCTGAAGGTGTGCAAAACCTATGCCACAAAAACT</left_flank>
        <right_flank>TTGTCACCGGACTCATCGACACCGCTGTCCTTATTGGCATCTCTTTTGCT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGTCATCTTGTCATGTTGTCATGTTGTCATGTTGTAGTTATTTTTCATCCACTAGAAAATGATATAGAACAAAATCCGATTTCCAGAGCTCATCACTATTCCTATTTGTCATCGACCCTGCCACTGTGAACGCCACCAGCTTTTTAGAAATCGCCTACTTCGCCGCCAGAAAATCCCCAAAACTCGTTGTTGTCTTCCTAGGAAAAACTGAATGGGCCGAGAAAGCACACCCTGACGATCTGCCGGATAGGAACCGAACATGTCAACTTCTCGACAAGATTCTGGAAAGCCATCAAGTTCCGATGCTTCACACTATCCCTGATGCCTTGGAGTTTATTGAGGAGGAGATGTTGGGACGTCAAAGTTTATTCGAAGCCATGAAATCGAAGACCAACCGATTGCCCTACATCCAGATCCGAGCTCGTCGAGCGATTCGAAATATCAAGGGGCTCACTTCACAAACCCTGAAGGTGTGCAAAACCTATGCCACAAAAACTTTTGTCACCGGACTCATCGACACCGCTGTCCTTATTGGCATCTCTTTTGCTTTCCCTGCTCTTCCACTCTTCTTCATCCTCATCCCACTTCTGATGCTCAACGTGGTATTCTTCGGAGTCGTTCACAAAGTACAATCCCTTCGCAAAAGGTACCCGAGAATGATTGCCGATTCTTCGGCAGTCATGTACCATGCAACTCCAGCTATTCCATCTCCAAGAGTCACCATGAAAGCTACCAACGTTAATGGATCCATCAGCTCTAAAACTGTTGTTCGCAGGCGATCAAAGCAAAATTTTGAGCAGTACTTCCCAGATGAGGGAGCATCCAGTTTCATTGTTCCAAGCTCTTTCTTGCCGAAGCAGTAAGTCGAAGCTGAGTCTTCATATAGTAGTAAGCTATCTGTTCAGAGAGACCAAGGTCAACATCGACTGCTCAGTTGTCGAACTTTGCTCGAGCTCACCAGATGATAACAGCTGGGTTCAAGAGTTGGCTGCTCCGGC</canonical>
            <polymorphic>TATGTCATCTTGTCATGTTGTCATGTTGTCATGTTGTAGTTATTTTTCATCCACTAGAAAATGATATAGAACAAAATCCGATTTCCAGAGCTCATCACTATTCCTATTTGTCATCGACCCTGCCACTGTGAACGCCACCAGCTTTTTAGAAATCGCCTACTTCGCCGCCAGAAAATCCCCAAAACTCGTTGTTGTCTTCCTAGGAAAAACTGAATGGGCCGAGAAAGCACACCCTGACGATCTGCCGGATAGGAACCGAACATGTCAACTTCTCGACAAGATTCTGGAAAGCCATCAAGTTCCGATGCTTCACACTATCCCTGATGCCTTGGAGTTTATTGAGGAGGAGATGTTGGGACGTCAAAGTTTATTCGAAGCCATGAAATCGAAGACCAACCGATTGCCCTACATCCAGATCCGAGCTCGTCGAGCGATTCGAAATATCAAGGGGCTCACTTCACAAACCCTGAAGGTGTGCAAAACCTATGCCACAAAAACTKTTGTCACCGGACTCATCGACACCGCTGTCCTTATTGGCATCTCTTTTGCTTTCCCTGCTCTTCCACTCTTCTTCATCCTCATCCCACTTCTGATGCTCAACGTGGTATTCTTCGGAGTCGTTCACAAAGTACAATCCCTTCGCAAAAGGTACCCGAGAATGATTGCCGATTCTTCGGCAGTCATGTACCATGCAACTCCAGCTATTCCATCTCCAAGAGTCACCATGAAAGCTACCAACGTTAATGGATCCATCAGCTCTAAAACTGTTGTTCGCAGGCGATCAAAGCAAAATTTTGAGCAGTACTTCCCAGATGAGGGAGCATCCAGTTTCATTGTTCCAAGCTCTTTCTTGCCGAAGCAGTAAGTCGAAGCTGAGTCTTCATATAGTAGTAAGCTATCTGTTCAGAGAGACCAAGGTCAACATCGACTGCTCAGTTGTCGAACTTTGCTCGAGCTCACCAGATGATAACAGCTGGGTTCAAGAGTTGGCTGCTCCGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTTTATTGAGGAGGAGATGTT</pcr_primer_p1>
		<pcr_primer_p2>AGGATGAAGAAGAGTGGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAGTTTATTGAGGAGGAGATGTTGGGACGTCAAAGTTTATTCGAAGCCATGAAATCGAAGACCAACCGATTGCCCTACATCCAGATCCGAGCTCGTCGAGCGATTCGAAATATCAAGGGGCTCACTTCACAAACCCTGAAGGTGTGCAAAACCTATGCCACAAAAACTTTTGTCACCGGACTCATCGACACCGCTGTCCTTATTGGCATCTCTTTTGCTTTCCCTGCTCTTCCACTCTTCTTCATCCT</canonical_amplicon>
		<polymorphic_amplicon>GAGTTTATTGAGGAGGAGATGTTGGGACGTCAAAGTTTATTCGAAGCCATGAAATCGAAGACCAACCGATTGCCCTACATCCAGATCCGAGCTCGTCGAGCGATTCGAAATATCAAGGGGCTCACTTCACAAACCCTGAAGGTGTGCAAAACCTATGCCACAAAAACTKTTGTCACCGGACTCATCGACACCGCTGTCCTTATTGGCATCTCTTTTGCTTTCCCTGCTCTTCCACTCTTCTTCATCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36594</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>325158</contig_pos>
        <strand>+</strand>
        <context>ATCATACCAC[A/C]AAAAAAATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAGTTGTAAAATGTAGCGCAAATCGGATCGAGGGATTCTGATCATACCAC</left_flank>
        <right_flank>AAAAAAATAATAATCGCCCCGCTTTATGAATGAAATGACGAATTTTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTCCTATCTGTCTGGCAGCCGTTCTTTTCCACCACCACGTGTATATTAAAAGTGATGTCATTGGCATATATTCTAGCACACTGTCTGTTTGCAATCATAAGACCTTGCAATATACGGGGAAGAATTTTTTCTGCTGTTGCTTCTCTAGGAGAGGGAATAGCATCATAATCCTAGAAAAGACCAGCGGTTTTTCTGCTGCTTTTCGTTTTCGACATTCACTTCCGATGTGATAAAAACGCTAAAACGCTACTTTGTGTCTTCTCGTGTTTGATCGGAAGTTTCAGGCAACACTTCGACATTCAATATTTCGAGAAAACATGTTTCAATGGAGACGAACATAGGGGTCGGGCTACATAACAATCTTTGACTCTAGTCAACATCGTGTACGAAACTTTACAAATCATAAAAAATAGGACCTAGTTTTGACCGTATACACACACCCACGCGCAGTTGTAAAATGTAGCGCAAATCGGATCGAGGGATTCTGATCATACCACAAAAAAAATAATAATCGCCCCGCTTTATGAATGAAATGACGAATTTTTTTCTTGGCCGATTTTGAACAAAACGATTTTTGTTCCAAATCTAAAACACAACGGTTATAAAAAACTTGAAAACAAGTTAGGAACAAGTTTGAAACATCAGTTGTATGAAAATATTGAATATGAGGGATCTCTCACCTGGAGGTACTCGAGTTTGGCTTGTCGGAACATTTCTAGCATAAGGTCAAACTGTTGAGTACGGTTCATGGTGACAGTAAAGGCACGACGCATGTAGAGCTGAAAATTAGTTGAAAATTTATTGAATGCCATAAAAAAATAATATTCAATTTTTTTTAATTAAAAAGTTTAAAAAACCTTAAGGTGGTTTAATCGTTCAATGTGCAATAAGAAATGCTCAAAACTTGAAAAAATCCAAACTAACTTTGAAAAAAATTACCAAAAAGCCGATAGGAACTTCAAAATGTTTTAATTGGAAATCTTGAAATTTTAAAAATT</canonical>
            <polymorphic>TGTTCCTATCTGTCTGGCAGCCGTTCTTTTCCACCACCACGTGTATATTAAAAGTGATGTCATTGGCATATATTCTAGCACACTGTCTGTTTGCAATCATAAGACCTTGCAATATACGGGGAAGAATTTTTTCTGCTGTTGCTTCTCTAGGAGAGGGAATAGCATCATAATCCTAGAAAAGACCAGCGGTTTTTCTGCTGCTTTTCGTTTTCGACATTCACTTCCGATGTGATAAAAACGCTAAAACGCTACTTTGTGTCTTCTCGTGTTTGATCGGAAGTTTCAGGCAACACTTCGACATTCAATATTTCGAGAAAACATGTTTCAATGGAGACGAACATAGGGGTCGGGCTACATAACAATCTTTGACTCTAGTCAACATCGTGTACGAAACTTTACAAATCATAAAAAATAGGACCTAGTTTTGACCGTATACACACACCCACGCGCAGTTGTAAAATGTAGCGCAAATCGGATCGAGGGATTCTGATCATACCACMAAAAAAATAATAATCGCCCCGCTTTATGAATGAAATGACGAATTTTTTTCTTGGCCGATTTTGAACAAAACGATTTTTGTTCCAAATCTAAAACACAACGGTTATAAAAAACTTGAAAACAAGTTAGGAACAAGTTTGAAACATCAGTTGTATGAAAATATTGAATATGAGGGATCTCTCACCTGGAGGTACTCGAGTTTGGCTTGTCGGAACATTTCTAGCATAAGGTCAAACTGTTGAGTACGGTTCATGGTGACAGTAAAGGCACGACGCATGTAGAGCTGAAAATTAGTTGAAAATTTATTGAATGCCATAAAAAAATAATATTCAATTTTTTTTAATTAAAAAGTTTAAAAAACCTTAAGGTGGTTTAATCGTTCAATGTGCAATAAGAAATGCTCAAAACTTGAAAAAATCCAAACTAACTTTGAAAAAAATTACCAAAAAGCCGATAGGAACTTCAAAATGTTTTAATTGGAAATCTTGAAATTTTAAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGCTACATAACAATCTTTGAC</pcr_primer_p1>
		<pcr_primer_p2>TGTTTTAGATTTGGAACAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGGCTACATAACAATCTTTGACTCTAGTCAACATCGTGTACGAAACTTTACAAATCATAAAAAATAGGACCTAGTTTTGACCGTATACACACACCCACGCGCAGTTGTAAAATGTAGCGCAAATCGGATCGAGGGATTCTGATCATACCACAAAAAAAATAATAATCGCCCCGCTTTATGAATGAAATGACGAATTTTTTTCTTGGCCGATTTTGAACAAAACGATTTTTGTTCCAAATCTAAAACA</canonical_amplicon>
		<polymorphic_amplicon>GGGCTACATAACAATCTTTGACTCTAGTCAACATCGTGTACGAAACTTTACAAATCATAAAAAATAGGACCTAGTTTTGACCGTATACACACACCCACGCGCAGTTGTAAAATGTAGCGCAAATCGGATCGAGGGATTCTGATCATACCACMAAAAAAATAATAATCGCCCCGCTTTATGAATGAAATGACGAATTTTTTTCTTGGCCGATTTTGAACAAAACGATTTTTGTTCCAAATCTAAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36595</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>327038</contig_pos>
        <strand></strand>
        <context>AGCTacagtc[C/A]ccggtcaata</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTC</left_flank>
        <right_flank>CCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCAATCCCTTGTTTTGACCGAACGGCATCCGCTTACCAATGTAATTAGCAGAAAGGTTTAGCTTGATAAGACTGTTTTGAGAATCCGAACCAAATAATGGAGTAGACGTAAGATCTTGAAAATTGTTTCCATGGAATGTCACACTTTTGATGTATCTGAAAAGCCAAAATTCGTAGTATAATGAATTTAGGAAACTCACTTATAATTAGTGGAAATATCCAAAAAGACATTTGCGTCCACAAATTGAGCATTGATGCACGAGTAGTCGCCGGCGGATGGATCACATTGACAAGCGGCATAGTCGGCTAATTTACCAGCGCAAATTAGTTTGTTCTCAATAGCTTCCTGAAGAAGGGGTTTATTAGTAACATATACGACATATGTTGAAAATTTTGAAATTGAAATTGAATGCAAATGGTTGTTCCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCACGTATCACAGA</canonical>
            <polymorphic>TTTCAATCCCTTGTTTTGACCGAACGGCATCCGCTTACCAATGTAATTAGCAGAAAGGTTTAGCTTGATAAGACTGTTTTGAGAATCCGAACCAAATAATGGAGTAGACGTAAGATCTTGAAAATTGTTTCCATGGAATGTCACACTTTTGATGTATCTGAAAAGCCAAAATTCGTAGTATAATGAATTTAGGAAACTCACTTATAATTAGTGGAAATATCCAAAAAGACATTTGCGTCCACAAATTGAGCATTGATGCACGAGTAGTCGCCGGCGGATGGATCACATTGACAAGCGGCATAGTCGGCTAATTTACCAGCGCAAATTAGTTTGTTCTCAATAGCTTCCTGAAGAAGGGGTTTATTAGTAACATATACGACATATGTTGAAAATTTTGAAATTGAAATTGAATGCAAATGGTTGTTCCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCMCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCACGTATCACAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>501 368 131</canonical_bands>
                <polymorphic_bands>869 131</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTGAATTATTTGAAAAAGAACA</pcr_primer_p1>
		<pcr_primer_p2>TGATGCAATTTCAGAACTCA</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>CCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCA</canonical_amplicon>
		<polymorphic_amplicon>CCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCMCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36596</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>327133</contig_pos>
        <strand></strand>
        <context>agttttcaat[C/A]gtattgaaar</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAAT</left_flank>
        <right_flank>GTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAATGGAGTAGACGTAAGATCTTGAAAATTGTTTCCATGGAATGTCACACTTTTGATGTATCTGAAAAGCCAAAATTCGTAGTATAATGAATTTAGGAAACTCACTTATAATTAGTGGAAATATCCAAAAAGACATTTGCGTCCACAAATTGAGCATTGATGCACGAGTAGTCGCCGGCGGATGGATCACATTGACAAGCGGCATAGTCGGCTAATTTACCAGCGCAAATTAGTTTGTTCTCAATAGCTTCCTGAAGAAGGGGTTTATTAGTAACATATACGACATATGTTGAAAATTTTGAAATTGAAATTGAATGCAAATGGTTGTTCCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCACGTATCACAGATTTTCCGGATTTTTCAAATGATAACTATTCATATTTTAAAATTCCGAAATCAATGATTCTAAAACTCAGAATTCCAATATCCGAGTATTGGTGGT</canonical>
            <polymorphic>ATAATGGAGTAGACGTAAGATCTTGAAAATTGTTTCCATGGAATGTCACACTTTTGATGTATCTGAAAAGCCAAAATTCGTAGTATAATGAATTTAGGAAACTCACTTATAATTAGTGGAAATATCCAAAAAGACATTTGCGTCCACAAATTGAGCATTGATGCACGAGTAGTCGCCGGCGGATGGATCACATTGACAAGCGGCATAGTCGGCTAATTTACCAGCGCAAATTAGTTTGTTCTCAATAGCTTCCTGAAGAAGGGGTTTATTAGTAACATATACGACATATGTTGAAAATTTTGAAATTGAAATTGAATGCAAATGGTTGTTCCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATMGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCACGTATCACAGATTTTCCGGATTTTTCAAATGATAACTATTCATATTTTAAAATTCCGAAATCAATGATTCTAAAACTCAGAATTCCAATATCCGAGTATTGGTGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTGAATTATTTGAAAAAGAACA</pcr_primer_p1>
		<pcr_primer_p2>TGATGCAATTTCAGAACTCA</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>CCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCA</canonical_amplicon>
		<polymorphic_amplicon>CCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATMGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36597</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>327143</contig_pos>
        <strand></strand>
        <context>mgtattgaaa[A/G]ttttggaggg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAA</left_flank>
        <right_flank>TTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGACGTAAGATCTTGAAAATTGTTTCCATGGAATGTCACACTTTTGATGTATCTGAAAAGCCAAAATTCGTAGTATAATGAATTTAGGAAACTCACTTATAATTAGTGGAAATATCCAAAAAGACATTTGCGTCCACAAATTGAGCATTGATGCACGAGTAGTCGCCGGCGGATGGATCACATTGACAAGCGGCATAGTCGGCTAATTTACCAGCGCAAATTAGTTTGTTCTCAATAGCTTCCTGAAGAAGGGGTTTATTAGTAACATATACGACATATGTTGAAAATTTTGAAATTGAAATTGAATGCAAATGGTTGTTCCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCACGTATCACAGATTTTCCGGATTTTTCAAATGATAACTATTCATATTTTAAAATTCCGAAATCAATGATTCTAAAACTCAGAATTCCAATATCCGAGTATTGGTGGTCAACAGTTGA</canonical>
            <polymorphic>AGACGTAAGATCTTGAAAATTGTTTCCATGGAATGTCACACTTTTGATGTATCTGAAAAGCCAAAATTCGTAGTATAATGAATTTAGGAAACTCACTTATAATTAGTGGAAATATCCAAAAAGACATTTGCGTCCACAAATTGAGCATTGATGCACGAGTAGTCGCCGGCGGATGGATCACATTGACAAGCGGCATAGTCGGCTAATTTACCAGCGCAAATTAGTTTGTTCTCAATAGCTTCCTGAAGAAGGGGTTTATTAGTAACATATACGACATATGTTGAAAATTTTGAAATTGAAATTGAATGCAAATGGTTGTTCCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAARTTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCACGTATCACAGATTTTCCGGATTTTTCAAATGATAACTATTCATATTTTAAAATTCCGAAATCAATGATTCTAAAACTCAGAATTCCAATATCCGAGTATTGGTGGTCAACAGTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>213 205 190 177 69 64 36 30 16</canonical_bands>
                <polymorphic_bands>403 205 177 69 64 36 30 16</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>174 122 67 66 65 60 55 52 50 47 38 36 30 25 20 18 17 16 14 14 8 6</canonical_bands>
                <polymorphic_bands>224 122 67 66 65 60 55 52 47 38 36 30 25 20 18 17 16 14 14 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTGAATTATTTGAAAAAGAACA</pcr_primer_p1>
		<pcr_primer_p2>TGATGCAATTTCAGAACTCA</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>CCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCA</canonical_amplicon>
		<polymorphic_amplicon>CCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAARTTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36598</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>327201</contig_pos>
        <strand></strand>
        <context>taatttttag[G/A]mtgttctcag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAG</left_flank>
        <right_flank>ATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCAAAATTCGTAGTATAATGAATTTAGGAAACTCACTTATAATTAGTGGAAATATCCAAAAAGACATTTGCGTCCACAAATTGAGCATTGATGCACGAGTAGTCGCCGGCGGATGGATCACATTGACAAGCGGCATAGTCGGCTAATTTACCAGCGCAAATTAGTTTGTTCTCAATAGCTTCCTGAAGAAGGGGTTTATTAGTAACATATACGACATATGTTGAAAATTTTGAAATTGAAATTGAATGCAAATGGTTGTTCCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCACGTATCACAGATTTTCCGGATTTTTCAAATGATAACTATTCATATTTTAAAATTCCGAAATCAATGATTCTAAAACTCAGAATTCCAATATCCGAGTATTGGTGGTCAACAGTTGATTGCTCATTTTTATTTAAAAAAAACTTACATCTCTATATTGATACTCCTGTCGGTTTC</canonical>
            <polymorphic>AGCCAAAATTCGTAGTATAATGAATTTAGGAAACTCACTTATAATTAGTGGAAATATCCAAAAAGACATTTGCGTCCACAAATTGAGCATTGATGCACGAGTAGTCGCCGGCGGATGGATCACATTGACAAGCGGCATAGTCGGCTAATTTACCAGCGCAAATTAGTTTGTTCTCAATAGCTTCCTGAAGAAGGGGTTTATTAGTAACATATACGACATATGTTGAAAATTTTGAAATTGAAATTGAATGCAAATGGTTGTTCCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGRATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCACGTATCACAGATTTTCCGGATTTTTCAAATGATAACTATTCATATTTTAAAATTCCGAAATCAATGATTCTAAAACTCAGAATTCCAATATCCGAGTATTGGTGGTCAACAGTTGATTGCTCATTTTTATTTAAAAAAAACTTACATCTCTATATTGATACTCCTGTCGGTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTGAATTATTTGAAAAAGAACA</pcr_primer_p1>
		<pcr_primer_p2>TGATGCAATTTCAGAACTCA</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>CCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCA</canonical_amplicon>
		<polymorphic_amplicon>CCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGRATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36599</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>327202</contig_pos>
        <strand></strand>
        <context>aatttttagr[A/C]tgttctcagt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGG</left_flank>
        <right_flank>TGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCAAAATTCGTAGTATAATGAATTTAGGAAACTCACTTATAATTAGTGGAAATATCCAAAAAGACATTTGCGTCCACAAATTGAGCATTGATGCACGAGTAGTCGCCGGCGGATGGATCACATTGACAAGCGGCATAGTCGGCTAATTTACCAGCGCAAATTAGTTTGTTCTCAATAGCTTCCTGAAGAAGGGGTTTATTAGTAACATATACGACATATGTTGAAAATTTTGAAATTGAAATTGAATGCAAATGGTTGTTCCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCACGTATCACAGATTTTCCGGATTTTTCAAATGATAACTATTCATATTTTAAAATTCCGAAATCAATGATTCTAAAACTCAGAATTCCAATATCCGAGTATTGGTGGTCAACAGTTGATTGCTCATTTTTATTTAAAAAAAACTTACATCTCTATATTGATACTCCTGTCGGTTTCC</canonical>
            <polymorphic>GCCAAAATTCGTAGTATAATGAATTTAGGAAACTCACTTATAATTAGTGGAAATATCCAAAAAGACATTTGCGTCCACAAATTGAGCATTGATGCACGAGTAGTCGCCGGCGGATGGATCACATTGACAAGCGGCATAGTCGGCTAATTTACCAGCGCAAATTAGTTTGTTCTCAATAGCTTCCTGAAGAAGGGGTTTATTAGTAACATATACGACATATGTTGAAAATTTTGAAATTGAAATTGAATGCAAATGGTTGTTCCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGMTGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCACGTATCACAGATTTTCCGGATTTTTCAAATGATAACTATTCATATTTTAAAATTCCGAAATCAATGATTCTAAAACTCAGAATTCCAATATCCGAGTATTGGTGGTCAACAGTTGATTGCTCATTTTTATTTAAAAAAAACTTACATCTCTATATTGATACTCCTGTCGGTTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTGAATTATTTGAAAAAGAACA</pcr_primer_p1>
		<pcr_primer_p2>TGATGCAATTTCAGAACTCA</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>CCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCA</canonical_amplicon>
		<polymorphic_amplicon>CCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGMTGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36600</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>327227</contig_pos>
        <strand></strand>
        <context>cagctttttg[C/T]cagttcctga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTG</left_flank>
        <right_flank>CAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGAAACTCACTTATAATTAGTGGAAATATCCAAAAAGACATTTGCGTCCACAAATTGAGCATTGATGCACGAGTAGTCGCCGGCGGATGGATCACATTGACAAGCGGCATAGTCGGCTAATTTACCAGCGCAAATTAGTTTGTTCTCAATAGCTTCCTGAAGAAGGGGTTTATTAGTAACATATACGACATATGTTGAAAATTTTGAAATTGAAATTGAATGCAAATGGTTGTTCCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCACGTATCACAGATTTTCCGGATTTTTCAAATGATAACTATTCATATTTTAAAATTCCGAAATCAATGATTCTAAAACTCAGAATTCCAATATCCGAGTATTGGTGGTCAACAGTTGATTGCTCATTTTTATTTAAAAAAAACTTACATCTCTATATTGATACTCCTGTCGGTTTCCAGCCTGAACCACCCACGCTGTTGAG</canonical>
            <polymorphic>TAGGAAACTCACTTATAATTAGTGGAAATATCCAAAAAGACATTTGCGTCCACAAATTGAGCATTGATGCACGAGTAGTCGCCGGCGGATGGATCACATTGACAAGCGGCATAGTCGGCTAATTTACCAGCGCAAATTAGTTTGTTCTCAATAGCTTCCTGAAGAAGGGGTTTATTAGTAACATATACGACATATGTTGAAAATTTTGAAATTGAAATTGAATGCAAATGGTTGTTCCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGYCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCACGTATCACAGATTTTCCGGATTTTTCAAATGATAACTATTCATATTTTAAAATTCCGAAATCAATGATTCTAAAACTCAGAATTCCAATATCCGAGTATTGGTGGTCAACAGTTGATTGCTCATTTTTATTTAAAAAAAACTTACATCTCTATATTGATACTCCTGTCGGTTTCCAGCCTGAACCACCCACGCTGTTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTGAATTATTTGAAAAAGAACA</pcr_primer_p1>
		<pcr_primer_p2>TGATGCAATTTCAGAACTCA</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>CCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCA</canonical_amplicon>
		<polymorphic_amplicon>CCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGYCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36601</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>327252</contig_pos>
        <strand></strand>
        <context>cacctttttt[C/T]acggtttcag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTT</left_flank>
        <right_flank>ACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATATCCAAAAAGACATTTGCGTCCACAAATTGAGCATTGATGCACGAGTAGTCGCCGGCGGATGGATCACATTGACAAGCGGCATAGTCGGCTAATTTACCAGCGCAAATTAGTTTGTTCTCAATAGCTTCCTGAAGAAGGGGTTTATTAGTAACATATACGACATATGTTGAAAATTTTGAAATTGAAATTGAATGCAAATGGTTGTTCCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCACGTATCACAGATTTTCCGGATTTTTCAAATGATAACTATTCATATTTTAAAATTCCGAAATCAATGATTCTAAAACTCAGAATTCCAATATCCGAGTATTGGTGGTCAACAGTTGATTGCTCATTTTTATTTAAAAAAAACTTACATCTCTATATTGATACTCCTGTCGGTTTCCAGCCTGAACCACCCACGCTGTTGAGCTGATCAACAGGTAGGTGATGGAGA</canonical>
            <polymorphic>AAATATCCAAAAAGACATTTGCGTCCACAAATTGAGCATTGATGCACGAGTAGTCGCCGGCGGATGGATCACATTGACAAGCGGCATAGTCGGCTAATTTACCAGCGCAAATTAGTTTGTTCTCAATAGCTTCCTGAAGAAGGGGTTTATTAGTAACATATACGACATATGTTGAAAATTTTGAAATTGAAATTGAATGCAAATGGTTGTTCCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTYACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCACGTATCACAGATTTTCCGGATTTTTCAAATGATAACTATTCATATTTTAAAATTCCGAAATCAATGATTCTAAAACTCAGAATTCCAATATCCGAGTATTGGTGGTCAACAGTTGATTGCTCATTTTTATTTAAAAAAAACTTACATCTCTATATTGATACTCCTGTCGGTTTCCAGCCTGAACCACCCACGCTGTTGAGCTGATCAACAGGTAGGTGATGGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>197 133 100 97 82 69 55 39 35 33 28 27 25 22 19 11 10 7 7 4</canonical_bands>
                <polymorphic_bands>197 133 100 97 82 69 55 39 35 33 28 27 25 22 21 19 7 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTGAATTATTTGAAAAAGAACA</pcr_primer_p1>
		<pcr_primer_p2>TGATGCAATTTCAGAACTCA</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>CCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCA</canonical_amplicon>
		<polymorphic_amplicon>CCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTYACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36602</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>327267</contig_pos>
        <strand></strand>
        <context>tttcagtgca[G/C]aactggctaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCA</left_flank>
        <right_flank>AACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTGCGTCCACAAATTGAGCATTGATGCACGAGTAGTCGCCGGCGGATGGATCACATTGACAAGCGGCATAGTCGGCTAATTTACCAGCGCAAATTAGTTTGTTCTCAATAGCTTCCTGAAGAAGGGGTTTATTAGTAACATATACGACATATGTTGAAAATTTTGAAATTGAAATTGAATGCAAATGGTTGTTCCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCACGTATCACAGATTTTCCGGATTTTTCAAATGATAACTATTCATATTTTAAAATTCCGAAATCAATGATTCTAAAACTCAGAATTCCAATATCCGAGTATTGGTGGTCAACAGTTGATTGCTCATTTTTATTTAAAAAAAACTTACATCTCTATATTGATACTCCTGTCGGTTTCCAGCCTGAACCACCCACGCTGTTGAGCTGATCAACAGGTAGGTGATGGAGATCAGCCAACTTCGTC</canonical>
            <polymorphic>CATTTGCGTCCACAAATTGAGCATTGATGCACGAGTAGTCGCCGGCGGATGGATCACATTGACAAGCGGCATAGTCGGCTAATTTACCAGCGCAAATTAGTTTGTTCTCAATAGCTTCCTGAAGAAGGGGTTTATTAGTAACATATACGACATATGTTGAAAATTTTGAAATTGAAATTGAATGCAAATGGTTGTTCCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCASAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCACGTATCACAGATTTTCCGGATTTTTCAAATGATAACTATTCATATTTTAAAATTCCGAAATCAATGATTCTAAAACTCAGAATTCCAATATCCGAGTATTGGTGGTCAACAGTTGATTGCTCATTTTTATTTAAAAAAAACTTACATCTCTATATTGATACTCCTGTCGGTTTCCAGCCTGAACCACCCACGCTGTTGAGCTGATCAACAGGTAGGTGATGGAGATCAGCCAACTTCGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTGAATTATTTGAAAAAGAACA</pcr_primer_p1>
		<pcr_primer_p2>TGATGCAATTTCAGAACTCA</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>CCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCA</canonical_amplicon>
		<polymorphic_amplicon>CCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCASAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36603</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>327293</contig_pos>
        <strand></strand>
        <context>agtgattttc[A/G]aaaatcggct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTC</left_flank>
        <right_flank>AAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCACGAGTAGTCGCCGGCGGATGGATCACATTGACAAGCGGCATAGTCGGCTAATTTACCAGCGCAAATTAGTTTGTTCTCAATAGCTTCCTGAAGAAGGGGTTTATTAGTAACATATACGACATATGTTGAAAATTTTGAAATTGAAATTGAATGCAAATGGTTGTTCCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCACGTATCACAGATTTTCCGGATTTTTCAAATGATAACTATTCATATTTTAAAATTCCGAAATCAATGATTCTAAAACTCAGAATTCCAATATCCGAGTATTGGTGGTCAACAGTTGATTGCTCATTTTTATTTAAAAAAAACTTACATCTCTATATTGATACTCCTGTCGGTTTCCAGCCTGAACCACCCACGCTGTTGAGCTGATCAACAGGTAGGTGATGGAGATCAGCCAACTTCGTCGAGGAATATTGTAACTCTGAAAAAAT</canonical>
            <polymorphic>ATGCACGAGTAGTCGCCGGCGGATGGATCACATTGACAAGCGGCATAGTCGGCTAATTTACCAGCGCAAATTAGTTTGTTCTCAATAGCTTCCTGAAGAAGGGGTTTATTAGTAACATATACGACATATGTTGAAAATTTTGAAATTGAAATTGAATGCAAATGGTTGTTCCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCRAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCACGTATCACAGATTTTCCGGATTTTTCAAATGATAACTATTCATATTTTAAAATTCCGAAATCAATGATTCTAAAACTCAGAATTCCAATATCCGAGTATTGGTGGTCAACAGTTGATTGCTCATTTTTATTTAAAAAAAACTTACATCTCTATATTGATACTCCTGTCGGTTTCCAGCCTGAACCACCCACGCTGTTGAGCTGATCAACAGGTAGGTGATGGAGATCAGCCAACTTCGTCGAGGAATATTGTAACTCTGAAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTGAATTATTTGAAAAAGAACA</pcr_primer_p1>
		<pcr_primer_p2>TGATGCAATTTCAGAACTCA</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>CCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCA</canonical_amplicon>
		<polymorphic_amplicon>CCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCRAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36604</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>327336</contig_pos>
        <strand></strand>
        <context>tcaaaaaatt[C/A]tgtaaacgca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATT</left_flank>
        <right_flank>TGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATAGTCGGCTAATTTACCAGCGCAAATTAGTTTGTTCTCAATAGCTTCCTGAAGAAGGGGTTTATTAGTAACATATACGACATATGTTGAAAATTTTGAAATTGAAATTGAATGCAAATGGTTGTTCCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCACGTATCACAGATTTTCCGGATTTTTCAAATGATAACTATTCATATTTTAAAATTCCGAAATCAATGATTCTAAAACTCAGAATTCCAATATCCGAGTATTGGTGGTCAACAGTTGATTGCTCATTTTTATTTAAAAAAAACTTACATCTCTATATTGATACTCCTGTCGGTTTCCAGCCTGAACCACCCACGCTGTTGAGCTGATCAACAGGTAGGTGATGGAGATCAGCCAACTTCGTCGAGGAATATTGTAACTCTGAAAAAATCAAATAGTTTCACATGTACACAGGTGGAAAGCCACAAAAAGTT</canonical>
            <polymorphic>CATAGTCGGCTAATTTACCAGCGCAAATTAGTTTGTTCTCAATAGCTTCCTGAAGAAGGGGTTTATTAGTAACATATACGACATATGTTGAAAATTTTGAAATTGAAATTGAATGCAAATGGTTGTTCCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTMTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCACGTATCACAGATTTTCCGGATTTTTCAAATGATAACTATTCATATTTTAAAATTCCGAAATCAATGATTCTAAAACTCAGAATTCCAATATCCGAGTATTGGTGGTCAACAGTTGATTGCTCATTTTTATTTAAAAAAAACTTACATCTCTATATTGATACTCCTGTCGGTTTCCAGCCTGAACCACCCACGCTGTTGAGCTGATCAACAGGTAGGTGATGGAGATCAGCCAACTTCGTCGAGGAATATTGTAACTCTGAAAAAATCAAATAGTTTCACATGTACACAGGTGGAAAGCCACAAAAAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>229 213 190 177 92 69 30</canonical_bands>
                <polymorphic_bands>259 229 213 177 92 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTGAATTATTTGAAAAAGAACA</pcr_primer_p1>
		<pcr_primer_p2>TGATGCAATTTCAGAACTCA</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>CCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCA</canonical_amplicon>
		<polymorphic_amplicon>CCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTMTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36605</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>327354</contig_pos>
        <strand></strand>
        <context>gcaatttttt[C/A]acttttggtc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTT</left_flank>
        <right_flank>ACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGCGCAAATTAGTTTGTTCTCAATAGCTTCCTGAAGAAGGGGTTTATTAGTAACATATACGACATATGTTGAAAATTTTGAAATTGAAATTGAATGCAAATGGTTGTTCCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCACGTATCACAGATTTTCCGGATTTTTCAAATGATAACTATTCATATTTTAAAATTCCGAAATCAATGATTCTAAAACTCAGAATTCCAATATCCGAGTATTGGTGGTCAACAGTTGATTGCTCATTTTTATTTAAAAAAAACTTACATCTCTATATTGATACTCCTGTCGGTTTCCAGCCTGAACCACCCACGCTGTTGAGCTGATCAACAGGTAGGTGATGGAGATCAGCCAACTTCGTCGAGGAATATTGTAACTCTGAAAAAATCAAATAGTTTCACATGTACACAGGTGGAAAGCCACAAAAAGTTGACAAGAAAACAAAACGA</canonical>
            <polymorphic>CAGCGCAAATTAGTTTGTTCTCAATAGCTTCCTGAAGAAGGGGTTTATTAGTAACATATACGACATATGTTGAAAATTTTGAAATTGAAATTGAATGCAAATGGTTGTTCCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTMACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCACGTATCACAGATTTTCCGGATTTTTCAAATGATAACTATTCATATTTTAAAATTCCGAAATCAATGATTCTAAAACTCAGAATTCCAATATCCGAGTATTGGTGGTCAACAGTTGATTGCTCATTTTTATTTAAAAAAAACTTACATCTCTATATTGATACTCCTGTCGGTTTCCAGCCTGAACCACCCACGCTGTTGAGCTGATCAACAGGTAGGTGATGGAGATCAGCCAACTTCGTCGAGGAATATTGTAACTCTGAAAAAATCAAATAGTTTCACATGTACACAGGTGGAAAGCCACAAAAAGTTGACAAGAAAACAAAACGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>166 133 100 97 82 69 60 55 39 35 33 28 27 22 11 10 8 8 7 6 4</canonical_bands>
                <polymorphic_bands>166 133 108 100 97 82 60 55 35 33 28 27 22 11 10 8 8 7 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTGAATTATTTGAAAAAGAACA</pcr_primer_p1>
		<pcr_primer_p2>TGATGCAATTTCAGAACTCA</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>CCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCA</canonical_amplicon>
		<polymorphic_amplicon>CCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTMACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36606</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>327385</contig_pos>
        <strand></strand>
        <context>cctccaaaag[C/T]ttcaaagtga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAG</left_flank>
        <right_flank>TTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAAGAAGGGGTTTATTAGTAACATATACGACATATGTTGAAAATTTTGAAATTGAAATTGAATGCAAATGGTTGTTCCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCACGTATCACAGATTTTCCGGATTTTTCAAATGATAACTATTCATATTTTAAAATTCCGAAATCAATGATTCTAAAACTCAGAATTCCAATATCCGAGTATTGGTGGTCAACAGTTGATTGCTCATTTTTATTTAAAAAAAACTTACATCTCTATATTGATACTCCTGTCGGTTTCCAGCCTGAACCACCCACGCTGTTGAGCTGATCAACAGGTAGGTGATGGAGATCAGCCAACTTCGTCGAGGAATATTGTAACTCTGAAAAAATCAAATAGTTTCACATGTACACAGGTGGAAAGCCACAAAAAGTTGACAAGAAAACAAAACGAAAGCAGTGTTGGTTGGAAACGGGGTGGAATG</canonical>
            <polymorphic>CTGAAGAAGGGGTTTATTAGTAACATATACGACATATGTTGAAAATTTTGAAATTGAAATTGAATGCAAATGGTTGTTCCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGYTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCACGTATCACAGATTTTCCGGATTTTTCAAATGATAACTATTCATATTTTAAAATTCCGAAATCAATGATTCTAAAACTCAGAATTCCAATATCCGAGTATTGGTGGTCAACAGTTGATTGCTCATTTTTATTTAAAAAAAACTTACATCTCTATATTGATACTCCTGTCGGTTTCCAGCCTGAACCACCCACGCTGTTGAGCTGATCAACAGGTAGGTGATGGAGATCAGCCAACTTCGTCGAGGAATATTGTAACTCTGAAAAAATCAAATAGTTTCACATGTACACAGGTGGAAAGCCACAAAAAGTTGACAAGAAAACAAAACGAAAGCAGTGTTGGTTGGAAACGGGGTGGAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>343 158 144 108 89 82 76</canonical_bands>
                <polymorphic_bands>419 158 144 108 89 82</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>220 144 103 82 76 68 61 54 50 41 29 28 23 9 7 5</canonical_bands>
                <polymorphic_bands>220 144 126 103 82 68 61 54 41 29 28 23 9 7 5</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTGAATTATTTGAAAAAGAACA</pcr_primer_p1>
		<pcr_primer_p2>TGATGCAATTTCAGAACTCA</pcr_primer_p2>
		<pcr_amplicon_size>564</pcr_amplicon_size>
		<canonical_amplicon>CCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGCTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCA</canonical_amplicon>
		<polymorphic_amplicon>CCTGAATTATTTGAAAAAGAACATGTATGTAATAAACTAATACAAAACGTATTGGCACCTTTCAAGCTACAGTCCCCGGTCAATAAGATGTGCAACATCGTTTTTAGGTTGATTTTTAGTCATTTTGACCATATTCCGGAGTCTGTAGCTTGGCTGTCAAGTTTTCAATCGTATTGAAAATTTTGGAGGGTGTAAAACAGATCTAGATGGAGAACTTTGCATTCACATAATTTTTAGGATGTTCTCAGTTTTTCAGCTTTTTGCCAGTTCCTGAAAGACACCTTTTTTCACGGTTTCAGTGCAGAACTGGCTAAAGAAGAGTGATTTTCAAAAATCGGCTAATAGCTGAAAATTATTGATTTTCAAAAAATTCTGTAAACGCAATTTTTTCACTTTTGGTCCATCTTTCTCCCTCCAAAAGYTTCAAAGTGATTTGAAATTTGCCCATCTAGATCCAGACGTCTGAAATGGCCGAAACGGCCAAAAATCAATTGAAAACTATTTTTTGTATATCTCATTGGCCGGTATTTCATCTGAATGCATTTGAGTTCTGAAATTGCATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36607</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>356575</contig_pos>
        <strand>+</strand>
        <context>TACTCATCTT[C/T]TGCTCCCTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATCGATTCGATGATTGAAAAAGTAGAGAAAATTTTCATTTACTCATCTT</left_flank>
        <right_flank>TGCTCCCTCCTTTCTCCATTGCTATTCTTCTTCTTCCTCCTTCGTCGCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAGTCTGGTTTTCTTCTACGTCATTCTGAAGTCATGAACTATTCTCTTAGAAAAAGTACACCATAATACAAAAAATCAGGACTATGCAACTGATTCATGATCTCGTTTTCCACATTTAGCAGACAAGAAAAATGTATTTCTTCTCCGACGAATTACAATAATACAAACCAAAAAAACTTCCCTTTCTAAAGACTCTTATCTTTGTTTTTGGCTTTTAAATGTATGGAAATGTTTTCAGTATTTCGTTTTGCTATTCCAATACATCATTTTTACGAGCCCCTTGTGTGTAAAGAACAAAATGAGAAATGGAAAGATGGAATCGAATAGTTCAAACTTTCGGATCTTGATTGATCCCCTTTTTTTCGGGGAAAGAAAAATATTGAGGTGTCCCACCCGCTTTTTTCTCTCATCATTAAAGTGACTCTTGGACTCAACACTCTCAACTTATCGATTCGATGATTGAAAAAGTAGAGAAAATTTTCATTTACTCATCTTTTGCTCCCTCCTTTCTCCATTGCTATTCTTCTTCTTCCTCCTTCGTCGCCATCCAGCAGTGCCATTTCTCTTCGGCAGGAGGAATGGTGTGTAAAGTGATGACGGCGGCGGTTTCTTCAGGAAGCGCAGGAGTAGCACAGCTCAACCTCGGCAGTAGTTGGAGCAGAGGAGCCCAGCATATTTTCGATACTCATCGAGCACTTGCCGTTTTGTTGTCATCCATCCAACAAATCAGCAAACAACATTTTTCCAATGATTTTTTTTGTTTCTTCTGCCCTGTTGCTGCTGGTCTGGAGTTCAATTTTGTTCTACGTGTACTCGATCAATGTCACTTTTGTCATTAATGAGCGTTTAGTGTCATCAGCGCAAGAAATCATAAATCGAGAGTCCACAAAAATTGGGGACCATTTGAGAACTTCTACTGAAAAGTGCAAGAAATTAATTTTACAATTTATGTTTTCCTGTTGCCTGCAATTGCAATTGTCCCAACTGAAATTTTAG</canonical>
            <polymorphic>AAAAAAGTCTGGTTTTCTTCTACGTCATTCTGAAGTCATGAACTATTCTCTTAGAAAAAGTACACCATAATACAAAAAATCAGGACTATGCAACTGATTCATGATCTCGTTTTCCACATTTAGCAGACAAGAAAAATGTATTTCTTCTCCGACGAATTACAATAATACAAACCAAAAAAACTTCCCTTTCTAAAGACTCTTATCTTTGTTTTTGGCTTTTAAATGTATGGAAATGTTTTCAGTATTTCGTTTTGCTATTCCAATACATCATTTTTACGAGCCCCTTGTGTGTAAAGAACAAAATGAGAAATGGAAAGATGGAATCGAATAGTTCAAACTTTCGGATCTTGATTGATCCCCTTTTTTTCGGGGAAAGAAAAATATTGAGGTGTCCCACCCGCTTTTTTCTCTCATCATTAAAGTGACTCTTGGACTCAACACTCTCAACTTATCGATTCGATGATTGAAAAAGTAGAGAAAATTTTCATTTACTCATCTTYTGCTCCCTCCTTTCTCCATTGCTATTCTTCTTCTTCCTCCTTCGTCGCCATCCAGCAGTGCCATTTCTCTTCGGCAGGAGGAATGGTGTGTAAAGTGATGACGGCGGCGGTTTCTTCAGGAAGCGCAGGAGTAGCACAGCTCAACCTCGGCAGTAGTTGGAGCAGAGGAGCCCAGCATATTTTCGATACTCATCGAGCACTTGCCGTTTTGTTGTCATCCATCCAACAAATCAGCAAACAACATTTTTCCAATGATTTTTTTTGTTTCTTCTGCCCTGTTGCTGCTGGTCTGGAGTTCAATTTTGTTCTACGTGTACTCGATCAATGTCACTTTTGTCATTAATGAGCGTTTAGTGTCATCAGCGCAAGAAATCATAAATCGAGAGTCCACAAAAATTGGGGACCATTTGAGAACTTCTACTGAAAAGTGCAAGAAATTAATTTTACAATTTATGTTTTCCTGTTGCCTGCAATTGCAATTGTCCCAACTGAAATTTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAGAAAAATATTGAGGTGTC</pcr_primer_p1>
		<pcr_primer_p2>GTCATCACTTTACACACCATTC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>GGAAAGAAAAATATTGAGGTGTCCCACCCGCTTTTTTCTCTCATCATTAAAGTGACTCTTGGACTCAACACTCTCAACTTATCGATTCGATGATTGAAAAAGTAGAGAAAATTTTCATTTACTCATCTTTTGCTCCCTCCTTTCTCCATTGCTATTCTTCTTCTTCCTCCTTCGTCGCCATCCAGCAGTGCCATTTCTCTTCGGCAGGAGGAATGGTGTGTAAAGTGATGAC</canonical_amplicon>
		<polymorphic_amplicon>GGAAAGAAAAATATTGAGGTGTCCCACCCGCTTTTTTCTCTCATCATTAAAGTGACTCTTGGACTCAACACTCTCAACTTATCGATTCGATGATTGAAAAAGTAGAGAAAATTTTCATTTACTCATCTTYTGCTCCCTCCTTTCTCCATTGCTATTCTTCTTCTTCCTCCTTCGTCGCCATCCAGCAGTGCCATTTCTCTTCGGCAGGAGGAATGGTGTGTAAAGTGATGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36608</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>369509</contig_pos>
        <strand>+</strand>
        <context>CTCCCAATTA[C/T]TTTYGCAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGAATCGGCTCTCAATTAGTGCTCTCTGATAGTTTTTTCTCCCAATTA</left_flank>
        <right_flank>TTTTGCAAAATATCTGGAAACCTTTTTGTGTCTTGCCTTTTTTTAAATGT</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAACAACATTGCCAAATTCTACAAAAGTCTTTTTCAGCGGGATCATTTCCATGAGTCTGGAACTCAGCTGTCAAGATTCCGAATACTTTGAAAACTTTAGAGAGTGTAAAGAGAGTTTTAGAGAGTGCAGATCTAGATTGAAAATGTTGCATTTACAGCGTTTCTGAAAATTATATTTTTTAGATAATTACCAATTTCTGGACGACACATATTTTTTCACGATTTCAGTGCAAAAAAAAACGCGCTCCAGGCTCCAGAAAATGATCAAATCTATTTAAAGTTTGTTTTAAATATTTTATTAGCCAGCATTGTCAGTGTTAAATTCAGAATGAGTGAAAAAACCAGTCCTTATTTCTCACAACGTGCTATAAAAGCATAAAAGCTGCCTCTTGAAAGTCGAATTATATTCTTTGTTCTTTTTTTATTAGGACGATAAGCCCAAATCCAAATGAATCGGCTCTCAATTAGTGCTCTCTGATAGTTTTTTCTCCCAATTATTTTTGCAAAATATCTGGAAACCTTTTTGTGTCTTGCCTTTTTTTAAATGTGGTTCTGAAAATCTTCCAACGTTCCCATGATCAAAAAAAATACAAGCGATCAAAAACTTATAGCCTCCACCCACACAAAAATTGAAAAATTTTCCGTTTTCCCACTGAAAATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATATGTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCTGCTACAACTACAGCGACTGCCATATTCGTGACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGACGGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAATAAACGATT</canonical>
            <polymorphic>TAGAACAACATTGCCAAATTCTACAAAAGTCTTTTTCAGCGGGATCATTTCCATGAGTCTGGAACTCAGCTGTCAAGATTCCGAATACTTTGAAAACTTTAGAGAGTGTAAAGAGAGTTTTAGAGAGTGCAGATCTAGATTGAAAATGTTGCATTTACAGCGTTTCTGAAAATTATATTTTTTAGATAATTACCAATTTCTGGACGACACATATTTTTTCACGATTTCAGTGCAAAAAAAAACGCGCTCCAGGCTCCAGAAAATGATCAAATCTATTTAAAGTTTGTTTTAAATATTTTATTAGCCAGCATTGTCAGTGTTAAATTCAGAATGAGTGAAAAAACCAGTCCTTATTTCTCACAACGTGCTATAAAAGCATAAAAGCTGCCTCTTGAAAGTCGAATTATATTCTTTGTTCTTTTTTTATTAGGACGATAAGCCCAAATCCAAATGAATCGGCTCTCAATTAGTGCTCTCTGATAGTTTTTTCTCCCAATTAYTTTTGCAAAATATCTGGAAACCTTTTTGTGTCTTGCCTTTTTTTAAATGTGGTTCTGAAAATCTTCCAACGTTCCCATGATCAAAAAAAATACAAGCGATCAAAAACTTATAGCCTCCACCCACACAAAAATTGAAAAATTTTCCGTTTTCCCACTGAAAATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATATGTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCTGCTACAACTACAGCGACTGCCATATTCGTGACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGACGGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAATAAACGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTTAAATTCAGAATGAGTGAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAGATTTTCAGAACCACATTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGTTAAATTCAGAATGAGTGAAAAAACCAGTCCTTATTTCTCACAACGTGCTATAAAAGCATAAAAGCTGCCTCTTGAAAGTCGAATTATATTCTTTGTTCTTTTTTTATTAGGACGATAAGCCCAAATCCAAATGAATCGGCTCTCAATTAGTGCTCTCTGATAGTTTTTTCTCCCAATTATTTTTGCAAAATATCTGGAAACCTTTTTGTGTCTTGCCTTTTTTTAAATGTGGTTCTGAAAATCTTC</canonical_amplicon>
		<polymorphic_amplicon>GTGTTAAATTCAGAATGAGTGAAAAAACCAGTCCTTATTTCTCACAACGTGCTATAAAAGCATAAAAGCTGCCTCTTGAAAGTCGAATTATATTCTTTGTTCTTTTTTTATTAGGACGATAAGCCCAAATCCAAATGAATCGGCTCTCAATTAGTGCTCTCTGATAGTTTTTTCTCCCAATTAYTTTTGCAAAATATCTGGAAACCTTTTTGTGTCTTGCCTTTTTTTAAATGTGGTTCTGAAAATCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36609</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>369513</contig_pos>
        <strand>+</strand>
        <context>CAATTAYTTT[C/T]GCAAAATATC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCGGCTCTCAATTAGTGCTCTCTGATAGTTTTTTCTCCCAATTATTTT</left_flank>
        <right_flank>GCAAAATATCTGGAAACCTTTTTGTGTCTTGCCTTTTTTTAAATGTGGTT</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAACATTGCCAAATTCTACAAAAGTCTTTTTCAGCGGGATCATTTCCATGAGTCTGGAACTCAGCTGTCAAGATTCCGAATACTTTGAAAACTTTAGAGAGTGTAAAGAGAGTTTTAGAGAGTGCAGATCTAGATTGAAAATGTTGCATTTACAGCGTTTCTGAAAATTATATTTTTTAGATAATTACCAATTTCTGGACGACACATATTTTTTCACGATTTCAGTGCAAAAAAAAACGCGCTCCAGGCTCCAGAAAATGATCAAATCTATTTAAAGTTTGTTTTAAATATTTTATTAGCCAGCATTGTCAGTGTTAAATTCAGAATGAGTGAAAAAACCAGTCCTTATTTCTCACAACGTGCTATAAAAGCATAAAAGCTGCCTCTTGAAAGTCGAATTATATTCTTTGTTCTTTTTTTATTAGGACGATAAGCCCAAATCCAAATGAATCGGCTCTCAATTAGTGCTCTCTGATAGTTTTTTCTCCCAATTATTTTTGCAAAATATCTGGAAACCTTTTTGTGTCTTGCCTTTTTTTAAATGTGGTTCTGAAAATCTTCCAACGTTCCCATGATCAAAAAAAATACAAGCGATCAAAAACTTATAGCCTCCACCCACACAAAAATTGAAAAATTTTCCGTTTTCCCACTGAAAATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATATGTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCTGCTACAACTACAGCGACTGCCATATTCGTGACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGACGGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAATAAACGATTGAGC</canonical>
            <polymorphic>ACAACATTGCCAAATTCTACAAAAGTCTTTTTCAGCGGGATCATTTCCATGAGTCTGGAACTCAGCTGTCAAGATTCCGAATACTTTGAAAACTTTAGAGAGTGTAAAGAGAGTTTTAGAGAGTGCAGATCTAGATTGAAAATGTTGCATTTACAGCGTTTCTGAAAATTATATTTTTTAGATAATTACCAATTTCTGGACGACACATATTTTTTCACGATTTCAGTGCAAAAAAAAACGCGCTCCAGGCTCCAGAAAATGATCAAATCTATTTAAAGTTTGTTTTAAATATTTTATTAGCCAGCATTGTCAGTGTTAAATTCAGAATGAGTGAAAAAACCAGTCCTTATTTCTCACAACGTGCTATAAAAGCATAAAAGCTGCCTCTTGAAAGTCGAATTATATTCTTTGTTCTTTTTTTATTAGGACGATAAGCCCAAATCCAAATGAATCGGCTCTCAATTAGTGCTCTCTGATAGTTTTTTCTCCCAATTATTTTYGCAAAATATCTGGAAACCTTTTTGTGTCTTGCCTTTTTTTAAATGTGGTTCTGAAAATCTTCCAACGTTCCCATGATCAAAAAAAATACAAGCGATCAAAAACTTATAGCCTCCACCCACACAAAAATTGAAAAATTTTCCGTTTTCCCACTGAAAATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATATGTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCTGCTACAACTACAGCGACTGCCATATTCGTGACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGACGGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAATAAACGATTGAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>336 273 163 125 81 22</canonical_bands>
                <polymorphic_bands>436 336 125 81 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGTTAAATTCAGAATGAGTGAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAGATTTTCAGAACCACATTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGTTAAATTCAGAATGAGTGAAAAAACCAGTCCTTATTTCTCACAACGTGCTATAAAAGCATAAAAGCTGCCTCTTGAAAGTCGAATTATATTCTTTGTTCTTTTTTTATTAGGACGATAAGCCCAAATCCAAATGAATCGGCTCTCAATTAGTGCTCTCTGATAGTTTTTTCTCCCAATTATTTTTGCAAAATATCTGGAAACCTTTTTGTGTCTTGCCTTTTTTTAAATGTGGTTCTGAAAATCTTC</canonical_amplicon>
		<polymorphic_amplicon>GTGTTAAATTCAGAATGAGTGAAAAAACCAGTCCTTATTTCTCACAACGTGCTATAAAAGCATAAAAGCTGCCTCTTGAAAGTCGAATTATATTCTTTGTTCTTTTTTTATTAGGACGATAAGCCCAAATCCAAATGAATCGGCTCTCAATTAGTGCTCTCTGATAGTTTTTTCTCCCAATTATTTTYGCAAAATATCTGGAAACCTTTTTGTGTCTTGCCTTTTTTTAAATGTGGTTCTGAAAATCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36610</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>369546</contig_pos>
        <strand>+</strand>
        <context>TGTGTCTTGC[A/C]TTTTTTTAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCTCCCAATTATTTTTGCAAAATATCTGGAAACCTTTTTGTGTCTTGC</left_flank>
        <right_flank>TTTTTTTAAATGTGGTTCTGAAAATCTTCCAACGTTCCCATGATCAAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCGGGATCATTTCCATGAGTCTGGAACTCAGCTGTCAAGATTCCGAATACTTTGAAAACTTTAGAGAGTGTAAAGAGAGTTTTAGAGAGTGCAGATCTAGATTGAAAATGTTGCATTTACAGCGTTTCTGAAAATTATATTTTTTAGATAATTACCAATTTCTGGACGACACATATTTTTTCACGATTTCAGTGCAAAAAAAAACGCGCTCCAGGCTCCAGAAAATGATCAAATCTATTTAAAGTTTGTTTTAAATATTTTATTAGCCAGCATTGTCAGTGTTAAATTCAGAATGAGTGAAAAAACCAGTCCTTATTTCTCACAACGTGCTATAAAAGCATAAAAGCTGCCTCTTGAAAGTCGAATTATATTCTTTGTTCTTTTTTTATTAGGACGATAAGCCCAAATCCAAATGAATCGGCTCTCAATTAGTGCTCTCTGATAGTTTTTTCTCCCAATTATTTTTGCAAAATATCTGGAAACCTTTTTGTGTCTTGCCTTTTTTTAAATGTGGTTCTGAAAATCTTCCAACGTTCCCATGATCAAAAAAAATACAAGCGATCAAAAACTTATAGCCTCCACCCACACAAAAATTGAAAAATTTTCCGTTTTCCCACTGAAAATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATATGTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCTGCTACAACTACAGCGACTGCCATATTCGTGACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGACGGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAATAAACGATTGAGCATTAATTTCTTGTTTTTTGAACATATCACAAAA</canonical>
            <polymorphic>AGCGGGATCATTTCCATGAGTCTGGAACTCAGCTGTCAAGATTCCGAATACTTTGAAAACTTTAGAGAGTGTAAAGAGAGTTTTAGAGAGTGCAGATCTAGATTGAAAATGTTGCATTTACAGCGTTTCTGAAAATTATATTTTTTAGATAATTACCAATTTCTGGACGACACATATTTTTTCACGATTTCAGTGCAAAAAAAAACGCGCTCCAGGCTCCAGAAAATGATCAAATCTATTTAAAGTTTGTTTTAAATATTTTATTAGCCAGCATTGTCAGTGTTAAATTCAGAATGAGTGAAAAAACCAGTCCTTATTTCTCACAACGTGCTATAAAAGCATAAAAGCTGCCTCTTGAAAGTCGAATTATATTCTTTGTTCTTTTTTTATTAGGACGATAAGCCCAAATCCAAATGAATCGGCTCTCAATTAGTGCTCTCTGATAGTTTTTTCTCCCAATTATTTTTGCAAAATATCTGGAAACCTTTTTGTGTCTTGCMTTTTTTTAAATGTGGTTCTGAAAATCTTCCAACGTTCCCATGATCAAAAAAAATACAAGCGATCAAAAACTTATAGCCTCCACCCACACAAAAATTGAAAAATTTTCCGTTTTCCCACTGAAAATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATATGTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCTGCTACAACTACAGCGACTGCCATATTCGTGACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGACGGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAATAAACGATTGAGCATTAATTTCTTGTTTTTTGAACATATCACAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAACGTGCTATAAAAGCATAAA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTGATCGCTTGTATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACAACGTGCTATAAAAGCATAAAAGCTGCCTCTTGAAAGTCGAATTATATTCTTTGTTCTTTTTTTATTAGGACGATAAGCCCAAATCCAAATGAATCGGCTCTCAATTAGTGCTCTCTGATAGTTTTTTCTCCCAATTATTTTTGCAAAATATCTGGAAACCTTTTTGTGTCTTGCCTTTTTTTAAATGTGGTTCTGAAAATCTTCCAACGTTCCCATGATCAAAAAAAATACAAGCGATCAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>ACAACGTGCTATAAAAGCATAAAAGCTGCCTCTTGAAAGTCGAATTATATTCTTTGTTCTTTTTTTATTAGGACGATAAGCCCAAATCCAAATGAATCGGCTCTCAATTAGTGCTCTCTGATAGTTTTTTCTCCCAATTATTTTTGCAAAATATCTGGAAACCTTTTTGTGTCTTGCMTTTTTTTAAATGTGGTTCTGAAAATCTTCCAACGTTCCCATGATCAAAAAAAATACAAGCGATCAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36611</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>369719</contig_pos>
        <strand>+</strand>
        <context>CGAGTATATA[A/T]GTAGAACGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATA</left_flank>
        <right_flank>GTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATTTTTTCACGATTTCAGTGCAAAAAAAAACGCGCTCCAGGCTCCAGAAAATGATCAAATCTATTTAAAGTTTGTTTTAAATATTTTATTAGCCAGCATTGTCAGTGTTAAATTCAGAATGAGTGAAAAAACCAGTCCTTATTTCTCACAACGTGCTATAAAAGCATAAAAGCTGCCTCTTGAAAGTCGAATTATATTCTTTGTTCTTTTTTTATTAGGACGATAAGCCCAAATCCAAATGAATCGGCTCTCAATTAGTGCTCTCTGATAGTTTTTTCTCCCAATTATTTTTGCAAAATATCTGGAAACCTTTTTGTGTCTTGCCTTTTTTTAAATGTGGTTCTGAAAATCTTCCAACGTTCCCATGATCAAAAAAAATACAAGCGATCAAAAACTTATAGCCTCCACCCACACAAAAATTGAAAAATTTTCCGTTTTCCCACTGAAAATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATATGTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCTGCTACAACTACAGCGACTGCCATATTCGTGACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGACGGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAATAAACGATTGAGCATTAATTTCTTGTTTTTTGAACATATCACAAAAAATTCTGAATCTAATAACGGACGAAATGTTGCAAAATTCTCGGATCAAATTGAAGGAAATTTGATAAATCCATAAATTTCGGTCACCAACTCTAAAAATGGGTTCTAAGTTCGGCTTAGTATGAAAAATTTTTAAGCTAGTAATATTTTCCTCAAGACTCTTTATTGACGGAT</canonical>
            <polymorphic>ATATTTTTTCACGATTTCAGTGCAAAAAAAAACGCGCTCCAGGCTCCAGAAAATGATCAAATCTATTTAAAGTTTGTTTTAAATATTTTATTAGCCAGCATTGTCAGTGTTAAATTCAGAATGAGTGAAAAAACCAGTCCTTATTTCTCACAACGTGCTATAAAAGCATAAAAGCTGCCTCTTGAAAGTCGAATTATATTCTTTGTTCTTTTTTTATTAGGACGATAAGCCCAAATCCAAATGAATCGGCTCTCAATTAGTGCTCTCTGATAGTTTTTTCTCCCAATTATTTTTGCAAAATATCTGGAAACCTTTTTGTGTCTTGCCTTTTTTTAAATGTGGTTCTGAAAATCTTCCAACGTTCCCATGATCAAAAAAAATACAAGCGATCAAAAACTTATAGCCTCCACCCACACAAAAATTGAAAAATTTTCCGTTTTCCCACTGAAAATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATAWGTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCTGCTACAACTACAGCGACTGCCATATTCGTGACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGACGGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAATAAACGATTGAGCATTAATTTCTTGTTTTTTGAACATATCACAAAAAATTCTGAATCTAATAACGGACGAAATGTTGCAAAATTCTCGGATCAAATTGAAGGAAATTTGATAAATCCATAAATTTCGGTCACCAACTCTAAAAATGGGTTCTAAGTTCGGCTTAGTATGAAAAATTTTTAAGCTAGTAATATTTTCCTCAAGACTCTTTATTGACGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTAAATGTGGTTCTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCATTTTCTGGAATAGGATATTT</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>TTTTTAAATGTGGTTCTGAAAATCTTCCAACGTTCCCATGATCAAAAAAAATACAAGCGATCAAAAACTTATAGCCTCCACCCACACAAAAATTGAAAAATTTTCCGTTTTCCCACTGAAAATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATATGTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTAAATGTGGTTCTGAAAATCTTCCAACGTTCCCATGATCAAAAAAAATACAAGCGATCAAAAACTTATAGCCTCCACCCACACAAAAATTGAAAAATTTTCCGTTTTCCCACTGAAAATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATAWGTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36612</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>369784</contig_pos>
        <strand>+</strand>
        <context>AAAATGAAGC[C/T]YTTCAACTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAAGC</left_flank>
        <right_flank>CTTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTCACAATCCGTGGCTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAAAGTTTGTTTTAAATATTTTATTAGCCAGCATTGTCAGTGTTAAATTCAGAATGAGTGAAAAAACCAGTCCTTATTTCTCACAACGTGCTATAAAAGCATAAAAGCTGCCTCTTGAAAGTCGAATTATATTCTTTGTTCTTTTTTTATTAGGACGATAAGCCCAAATCCAAATGAATCGGCTCTCAATTAGTGCTCTCTGATAGTTTTTTCTCCCAATTATTTTTGCAAAATATCTGGAAACCTTTTTGTGTCTTGCCTTTTTTTAAATGTGGTTCTGAAAATCTTCCAACGTTCCCATGATCAAAAAAAATACAAGCGATCAAAAACTTATAGCCTCCACCCACACAAAAATTGAAAAATTTTCCGTTTTCCCACTGAAAATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATATGTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCTGCTACAACTACAGCGACTGCCATATTCGTGACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGACGGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAATAAACGATTGAGCATTAATTTCTTGTTTTTTGAACATATCACAAAAAATTCTGAATCTAATAACGGACGAAATGTTGCAAAATTCTCGGATCAAATTGAAGGAAATTTGATAAATCCATAAATTTCGGTCACCAACTCTAAAAATGGGTTCTAAGTTCGGCTTAGTATGAAAAATTTTTAAGCTAGTAATATTTTCCTCAAGACTCTTTATTGACGGATCATCAAGAAACGTGTAAACAACAGAGAACGAATCTACATTTTTTCGAGAAACACTTTTTTGCAGA</canonical>
            <polymorphic>TTTAAAGTTTGTTTTAAATATTTTATTAGCCAGCATTGTCAGTGTTAAATTCAGAATGAGTGAAAAAACCAGTCCTTATTTCTCACAACGTGCTATAAAAGCATAAAAGCTGCCTCTTGAAAGTCGAATTATATTCTTTGTTCTTTTTTTATTAGGACGATAAGCCCAAATCCAAATGAATCGGCTCTCAATTAGTGCTCTCTGATAGTTTTTTCTCCCAATTATTTTTGCAAAATATCTGGAAACCTTTTTGTGTCTTGCCTTTTTTTAAATGTGGTTCTGAAAATCTTCCAACGTTCCCATGATCAAAAAAAATACAAGCGATCAAAAACTTATAGCCTCCACCCACACAAAAATTGAAAAATTTTCCGTTTTCCCACTGAAAATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATATGTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAAGCYCTTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCTGCTACAACTACAGCGACTGCCATATTCGTGACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGACGGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAATAAACGATTGAGCATTAATTTCTTGTTTTTTGAACATATCACAAAAAATTCTGAATCTAATAACGGACGAAATGTTGCAAAATTCTCGGATCAAATTGAAGGAAATTTGATAAATCCATAAATTTCGGTCACCAACTCTAAAAATGGGTTCTAAGTTCGGCTTAGTATGAAAAATTTTTAAGCTAGTAATATTTTCCTCAAGACTCTTTATTGACGGATCATCAAGAAACGTGTAAACAACAGAGAACGAATCTACATTTTTTCGAGAAACACTTTTTTGCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>389 225 175 109 102</canonical_bands>
                <polymorphic_bands>564 225 109 102</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>203 160 154 112 102 80 55 49 29 22 20 14</canonical_bands>
                <polymorphic_bands>209 203 154 112 102 80 55 29 22 20 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCCACACAAAAATTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGAACTTTCTCTCGCCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ACCCACACAAAAATTGAAAAATTTTCCGTTTTCCCACTGAAAATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATATGTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCT</canonical_amplicon>
		<polymorphic_amplicon>ACCCACACAAAAATTGAAAAATTTTCCGTTTTCCCACTGAAAATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATATGTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAAGCYCTTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36613</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>369785</contig_pos>
        <strand>+</strand>
        <context>AAATGAAGCY[C/T]TTCAACTTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAAGCT</left_flank>
        <right_flank>TTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTCACAATCCGTGGCTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAGTTTGTTTTAAATATTTTATTAGCCAGCATTGTCAGTGTTAAATTCAGAATGAGTGAAAAAACCAGTCCTTATTTCTCACAACGTGCTATAAAAGCATAAAAGCTGCCTCTTGAAAGTCGAATTATATTCTTTGTTCTTTTTTTATTAGGACGATAAGCCCAAATCCAAATGAATCGGCTCTCAATTAGTGCTCTCTGATAGTTTTTTCTCCCAATTATTTTTGCAAAATATCTGGAAACCTTTTTGTGTCTTGCCTTTTTTTAAATGTGGTTCTGAAAATCTTCCAACGTTCCCATGATCAAAAAAAATACAAGCGATCAAAAACTTATAGCCTCCACCCACACAAAAATTGAAAAATTTTCCGTTTTCCCACTGAAAATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATATGTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCTGCTACAACTACAGCGACTGCCATATTCGTGACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGACGGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAATAAACGATTGAGCATTAATTTCTTGTTTTTTGAACATATCACAAAAAATTCTGAATCTAATAACGGACGAAATGTTGCAAAATTCTCGGATCAAATTGAAGGAAATTTGATAAATCCATAAATTTCGGTCACCAACTCTAAAAATGGGTTCTAAGTTCGGCTTAGTATGAAAAATTTTTAAGCTAGTAATATTTTCCTCAAGACTCTTTATTGACGGATCATCAAGAAACGTGTAAACAACAGAGAACGAATCTACATTTTTTCGAGAAACACTTTTTTGCAGAA</canonical>
            <polymorphic>TTAAAGTTTGTTTTAAATATTTTATTAGCCAGCATTGTCAGTGTTAAATTCAGAATGAGTGAAAAAACCAGTCCTTATTTCTCACAACGTGCTATAAAAGCATAAAAGCTGCCTCTTGAAAGTCGAATTATATTCTTTGTTCTTTTTTTATTAGGACGATAAGCCCAAATCCAAATGAATCGGCTCTCAATTAGTGCTCTCTGATAGTTTTTTCTCCCAATTATTTTTGCAAAATATCTGGAAACCTTTTTGTGTCTTGCCTTTTTTTAAATGTGGTTCTGAAAATCTTCCAACGTTCCCATGATCAAAAAAAATACAAGCGATCAAAAACTTATAGCCTCCACCCACACAAAAATTGAAAAATTTTCCGTTTTCCCACTGAAAATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATATGTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAAGCTYTTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCTGCTACAACTACAGCGACTGCCATATTCGTGACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGACGGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAATAAACGATTGAGCATTAATTTCTTGTTTTTTGAACATATCACAAAAAATTCTGAATCTAATAACGGACGAAATGTTGCAAAATTCTCGGATCAAATTGAAGGAAATTTGATAAATCCATAAATTTCGGTCACCAACTCTAAAAATGGGTTCTAAGTTCGGCTTAGTATGAAAAATTTTTAAGCTAGTAATATTTTCCTCAAGACTCTTTATTGACGGATCATCAAGAAACGTGTAAACAACAGAGAACGAATCTACATTTTTTCGAGAAACACTTTTTTGCAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCCACACAAAAATTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGAACTTTCTCTCGCCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ACCCACACAAAAATTGAAAAATTTTCCGTTTTCCCACTGAAAATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATATGTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCT</canonical_amplicon>
		<polymorphic_amplicon>ACCCACACAAAAATTGAAAAATTTTCCGTTTTCCCACTGAAAATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATATGTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAAGCTYTTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36614</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>369810</contig_pos>
        <strand>+</strand>
        <context>CCTCGTCTTC[A/T]TWTTCYCTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTC</left_flank>
        <right_flank>TTTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGCCAGCATTGTCAGTGTTAAATTCAGAATGAGTGAAAAAACCAGTCCTTATTTCTCACAACGTGCTATAAAAGCATAAAAGCTGCCTCTTGAAAGTCGAATTATATTCTTTGTTCTTTTTTTATTAGGACGATAAGCCCAAATCCAAATGAATCGGCTCTCAATTAGTGCTCTCTGATAGTTTTTTCTCCCAATTATTTTTGCAAAATATCTGGAAACCTTTTTGTGTCTTGCCTTTTTTTAAATGTGGTTCTGAAAATCTTCCAACGTTCCCATGATCAAAAAAAATACAAGCGATCAAAAACTTATAGCCTCCACCCACACAAAAATTGAAAAATTTTCCGTTTTCCCACTGAAAATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATATGTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCTGCTACAACTACAGCGACTGCCATATTCGTGACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGACGGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAATAAACGATTGAGCATTAATTTCTTGTTTTTTGAACATATCACAAAAAATTCTGAATCTAATAACGGACGAAATGTTGCAAAATTCTCGGATCAAATTGAAGGAAATTTGATAAATCCATAAATTTCGGTCACCAACTCTAAAAATGGGTTCTAAGTTCGGCTTAGTATGAAAAATTTTTAAGCTAGTAATATTTTCCTCAAGACTCTTTATTGACGGATCATCAAGAAACGTGTAAACAACAGAGAACGAATCTACATTTTTTCGAGAAACACTTTTTTGCAGAAAAAATAAAACAGAAGAAACACACAC</canonical>
            <polymorphic>TAGCCAGCATTGTCAGTGTTAAATTCAGAATGAGTGAAAAAACCAGTCCTTATTTCTCACAACGTGCTATAAAAGCATAAAAGCTGCCTCTTGAAAGTCGAATTATATTCTTTGTTCTTTTTTTATTAGGACGATAAGCCCAAATCCAAATGAATCGGCTCTCAATTAGTGCTCTCTGATAGTTTTTTCTCCCAATTATTTTTGCAAAATATCTGGAAACCTTTTTGTGTCTTGCCTTTTTTTAAATGTGGTTCTGAAAATCTTCCAACGTTCCCATGATCAAAAAAAATACAAGCGATCAAAAACTTATAGCCTCCACCCACACAAAAATTGAAAAATTTTCCGTTTTCCCACTGAAAATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATATGTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCWTTTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCTGCTACAACTACAGCGACTGCCATATTCGTGACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGACGGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAATAAACGATTGAGCATTAATTTCTTGTTTTTTGAACATATCACAAAAAATTCTGAATCTAATAACGGACGAAATGTTGCAAAATTCTCGGATCAAATTGAAGGAAATTTGATAAATCCATAAATTTCGGTCACCAACTCTAAAAATGGGTTCTAAGTTCGGCTTAGTATGAAAAATTTTTAAGCTAGTAATATTTTCCTCAAGACTCTTTATTGACGGATCATCAAGAAACGTGTAAACAACAGAGAACGAATCTACATTTTTTCGAGAAACACTTTTTTGCAGAAAAAATAAAACAGAAGAAACACACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCCACACAAAAATTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGAACTTTCTCTCGCCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ACCCACACAAAAATTGAAAAATTTTCCGTTTTCCCACTGAAAATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATATGTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCT</canonical_amplicon>
		<polymorphic_amplicon>ACCCACACAAAAATTGAAAAATTTTCCGTTTTCCCACTGAAAATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATATGTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCWTTTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36615</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>369812</contig_pos>
        <strand>+</strand>
        <context>TCGTCTTCWT[A/T]TTCYCTTCMC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCAT</left_flank>
        <right_flank>TTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCAGCATTGTCAGTGTTAAATTCAGAATGAGTGAAAAAACCAGTCCTTATTTCTCACAACGTGCTATAAAAGCATAAAAGCTGCCTCTTGAAAGTCGAATTATATTCTTTGTTCTTTTTTTATTAGGACGATAAGCCCAAATCCAAATGAATCGGCTCTCAATTAGTGCTCTCTGATAGTTTTTTCTCCCAATTATTTTTGCAAAATATCTGGAAACCTTTTTGTGTCTTGCCTTTTTTTAAATGTGGTTCTGAAAATCTTCCAACGTTCCCATGATCAAAAAAAATACAAGCGATCAAAAACTTATAGCCTCCACCCACACAAAAATTGAAAAATTTTCCGTTTTCCCACTGAAAATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATATGTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCTGCTACAACTACAGCGACTGCCATATTCGTGACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGACGGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAATAAACGATTGAGCATTAATTTCTTGTTTTTTGAACATATCACAAAAAATTCTGAATCTAATAACGGACGAAATGTTGCAAAATTCTCGGATCAAATTGAAGGAAATTTGATAAATCCATAAATTTCGGTCACCAACTCTAAAAATGGGTTCTAAGTTCGGCTTAGTATGAAAAATTTTTAAGCTAGTAATATTTTCCTCAAGACTCTTTATTGACGGATCATCAAGAAACGTGTAAACAACAGAGAACGAATCTACATTTTTTCGAGAAACACTTTTTTGCAGAAAAAATAAAACAGAAGAAACACACACAT</canonical>
            <polymorphic>GCCAGCATTGTCAGTGTTAAATTCAGAATGAGTGAAAAAACCAGTCCTTATTTCTCACAACGTGCTATAAAAGCATAAAAGCTGCCTCTTGAAAGTCGAATTATATTCTTTGTTCTTTTTTTATTAGGACGATAAGCCCAAATCCAAATGAATCGGCTCTCAATTAGTGCTCTCTGATAGTTTTTTCTCCCAATTATTTTTGCAAAATATCTGGAAACCTTTTTGTGTCTTGCCTTTTTTTAAATGTGGTTCTGAAAATCTTCCAACGTTCCCATGATCAAAAAAAATACAAGCGATCAAAAACTTATAGCCTCCACCCACACAAAAATTGAAAAATTTTCCGTTTTCCCACTGAAAATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATATGTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCATWTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCTGCTACAACTACAGCGACTGCCATATTCGTGACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGACGGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAATAAACGATTGAGCATTAATTTCTTGTTTTTTGAACATATCACAAAAAATTCTGAATCTAATAACGGACGAAATGTTGCAAAATTCTCGGATCAAATTGAAGGAAATTTGATAAATCCATAAATTTCGGTCACCAACTCTAAAAATGGGTTCTAAGTTCGGCTTAGTATGAAAAATTTTTAAGCTAGTAATATTTTCCTCAAGACTCTTTATTGACGGATCATCAAGAAACGTGTAAACAACAGAGAACGAATCTACATTTTTTCGAGAAACACTTTTTTGCAGAAAAAATAAAACAGAAGAAACACACACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATCCTATTCCAGAAAATGAAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTATTCGATATCCATCACAAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCTGCTACAACTACAGCGACTGCCATATTCGTGACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGACGGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAAT</canonical_amplicon>
		<polymorphic_amplicon>AATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCATWTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCTGCTACAACTACAGCGACTGCCATATTCGTGACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGACGGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36616</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>369816</contig_pos>
        <strand>+</strand>
        <context>CTTCWTWTTC[C/T]CTTCMCAATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCATTTTC</left_flank>
        <right_flank>CTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATTGTCAGTGTTAAATTCAGAATGAGTGAAAAAACCAGTCCTTATTTCTCACAACGTGCTATAAAAGCATAAAAGCTGCCTCTTGAAAGTCGAATTATATTCTTTGTTCTTTTTTTATTAGGACGATAAGCCCAAATCCAAATGAATCGGCTCTCAATTAGTGCTCTCTGATAGTTTTTTCTCCCAATTATTTTTGCAAAATATCTGGAAACCTTTTTGTGTCTTGCCTTTTTTTAAATGTGGTTCTGAAAATCTTCCAACGTTCCCATGATCAAAAAAAATACAAGCGATCAAAAACTTATAGCCTCCACCCACACAAAAATTGAAAAATTTTCCGTTTTCCCACTGAAAATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATATGTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCTGCTACAACTACAGCGACTGCCATATTCGTGACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGACGGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAATAAACGATTGAGCATTAATTTCTTGTTTTTTGAACATATCACAAAAAATTCTGAATCTAATAACGGACGAAATGTTGCAAAATTCTCGGATCAAATTGAAGGAAATTTGATAAATCCATAAATTTCGGTCACCAACTCTAAAAATGGGTTCTAAGTTCGGCTTAGTATGAAAAATTTTTAAGCTAGTAATATTTTCCTCAAGACTCTTTATTGACGGATCATCAAGAAACGTGTAAACAACAGAGAACGAATCTACATTTTTTCGAGAAACACTTTTTTGCAGAAAAAATAAAACAGAAGAAACACACACATTTCG</canonical>
            <polymorphic>GCATTGTCAGTGTTAAATTCAGAATGAGTGAAAAAACCAGTCCTTATTTCTCACAACGTGCTATAAAAGCATAAAAGCTGCCTCTTGAAAGTCGAATTATATTCTTTGTTCTTTTTTTATTAGGACGATAAGCCCAAATCCAAATGAATCGGCTCTCAATTAGTGCTCTCTGATAGTTTTTTCTCCCAATTATTTTTGCAAAATATCTGGAAACCTTTTTGTGTCTTGCCTTTTTTTAAATGTGGTTCTGAAAATCTTCCAACGTTCCCATGATCAAAAAAAATACAAGCGATCAAAAACTTATAGCCTCCACCCACACAAAAATTGAAAAATTTTCCGTTTTCCCACTGAAAATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATATGTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCATTTTCYCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCTGCTACAACTACAGCGACTGCCATATTCGTGACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGACGGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAATAAACGATTGAGCATTAATTTCTTGTTTTTTGAACATATCACAAAAAATTCTGAATCTAATAACGGACGAAATGTTGCAAAATTCTCGGATCAAATTGAAGGAAATTTGATAAATCCATAAATTTCGGTCACCAACTCTAAAAATGGGTTCTAAGTTCGGCTTAGTATGAAAAATTTTTAAGCTAGTAATATTTTCCTCAAGACTCTTTATTGACGGATCATCAAGAAACGTGTAAACAACAGAGAACGAATCTACATTTTTTCGAGAAACACTTTTTTGCAGAAAAAATAAAACAGAAGAAACACACACATTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATCCTATTCCAGAAAATGAAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTATTCGATATCCATCACAAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCTGCTACAACTACAGCGACTGCCATATTCGTGACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGACGGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAAT</canonical_amplicon>
		<polymorphic_amplicon>AATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCATTTTCYCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCTGCTACAACTACAGCGACTGCCATATTCGTGACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGACGGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36617</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>369821</contig_pos>
        <strand>+</strand>
        <context>TWTTCYCTTC[A/C]CAATCCGTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTC</left_flank>
        <right_flank>CAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCAGTGTTAAATTCAGAATGAGTGAAAAAACCAGTCCTTATTTCTCACAACGTGCTATAAAAGCATAAAAGCTGCCTCTTGAAAGTCGAATTATATTCTTTGTTCTTTTTTTATTAGGACGATAAGCCCAAATCCAAATGAATCGGCTCTCAATTAGTGCTCTCTGATAGTTTTTTCTCCCAATTATTTTTGCAAAATATCTGGAAACCTTTTTGTGTCTTGCCTTTTTTTAAATGTGGTTCTGAAAATCTTCCAACGTTCCCATGATCAAAAAAAATACAAGCGATCAAAAACTTATAGCCTCCACCCACACAAAAATTGAAAAATTTTCCGTTTTCCCACTGAAAATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATATGTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCTGCTACAACTACAGCGACTGCCATATTCGTGACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGACGGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAATAAACGATTGAGCATTAATTTCTTGTTTTTTGAACATATCACAAAAAATTCTGAATCTAATAACGGACGAAATGTTGCAAAATTCTCGGATCAAATTGAAGGAAATTTGATAAATCCATAAATTTCGGTCACCAACTCTAAAAATGGGTTCTAAGTTCGGCTTAGTATGAAAAATTTTTAAGCTAGTAATATTTTCCTCAAGACTCTTTATTGACGGATCATCAAGAAACGTGTAAACAACAGAGAACGAATCTACATTTTTTCGAGAAACACTTTTTTGCAGAAAAAATAAAACAGAAGAAACACACACATTTCGAGAGT</canonical>
            <polymorphic>GTCAGTGTTAAATTCAGAATGAGTGAAAAAACCAGTCCTTATTTCTCACAACGTGCTATAAAAGCATAAAAGCTGCCTCTTGAAAGTCGAATTATATTCTTTGTTCTTTTTTTATTAGGACGATAAGCCCAAATCCAAATGAATCGGCTCTCAATTAGTGCTCTCTGATAGTTTTTTCTCCCAATTATTTTTGCAAAATATCTGGAAACCTTTTTGTGTCTTGCCTTTTTTTAAATGTGGTTCTGAAAATCTTCCAACGTTCCCATGATCAAAAAAAATACAAGCGATCAAAAACTTATAGCCTCCACCCACACAAAAATTGAAAAATTTTCCGTTTTCCCACTGAAAATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATATGTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTCMCAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCTGCTACAACTACAGCGACTGCCATATTCGTGACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGACGGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAATAAACGATTGAGCATTAATTTCTTGTTTTTTGAACATATCACAAAAAATTCTGAATCTAATAACGGACGAAATGTTGCAAAATTCTCGGATCAAATTGAAGGAAATTTGATAAATCCATAAATTTCGGTCACCAACTCTAAAAATGGGTTCTAAGTTCGGCTTAGTATGAAAAATTTTTAAGCTAGTAATATTTTCCTCAAGACTCTTTATTGACGGATCATCAAGAAACGTGTAAACAACAGAGAACGAATCTACATTTTTTCGAGAAACACTTTTTTGCAGAAAAAATAAAACAGAAGAAACACACACATTTCGAGAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>158 105 102 90 70 68 65 58 57 39 33 29 23 21 19 18 12 9 7 7 4 2 2 2</canonical_bands>
                <polymorphic_bands>167 105 102 90 70 68 65 58 57 39 33 29 23 21 19 18 12 7 7 4 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATATCCTATTCCAGAAAATGAAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTATTCGATATCCATCACAAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCTGCTACAACTACAGCGACTGCCATATTCGTGACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGACGGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAAT</canonical_amplicon>
		<polymorphic_amplicon>AATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTCMCAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCTGCTACAACTACAGCGACTGCCATATTCGTGACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGACGGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36618</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>369950</contig_pos>
        <strand>+</strand>
        <context>AGATATGGGA[C/T]GGAACAGCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGA</left_flank>
        <right_flank>GGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATCCAAATGAATCGGCTCTCAATTAGTGCTCTCTGATAGTTTTTTCTCCCAATTATTTTTGCAAAATATCTGGAAACCTTTTTGTGTCTTGCCTTTTTTTAAATGTGGTTCTGAAAATCTTCCAACGTTCCCATGATCAAAAAAAATACAAGCGATCAAAAACTTATAGCCTCCACCCACACAAAAATTGAAAAATTTTCCGTTTTCCCACTGAAAATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATATGTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCTGCTACAACTACAGCGACTGCCATATTCGTGACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGACGGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAATAAACGATTGAGCATTAATTTCTTGTTTTTTGAACATATCACAAAAAATTCTGAATCTAATAACGGACGAAATGTTGCAAAATTCTCGGATCAAATTGAAGGAAATTTGATAAATCCATAAATTTCGGTCACCAACTCTAAAAATGGGTTCTAAGTTCGGCTTAGTATGAAAAATTTTTAAGCTAGTAATATTTTCCTCAAGACTCTTTATTGACGGATCATCAAGAAACGTGTAAACAACAGAGAACGAATCTACATTTTTTCGAGAAACACTTTTTTGCAGAAAAAATAAAACAGAAGAAACACACACATTTCGAGAGTCAGTTGCGTTTTTTTGGATAAATATATGAGAGAGTGACACAAAGTGCTATAAAGAAATCCGTCTACATGTCCTAAACGTTGAGTATTTATCGATCGACCTCTCCGAACACAATATCCATAGTACCAATA</canonical>
            <polymorphic>CAAATCCAAATGAATCGGCTCTCAATTAGTGCTCTCTGATAGTTTTTTCTCCCAATTATTTTTGCAAAATATCTGGAAACCTTTTTGTGTCTTGCCTTTTTTTAAATGTGGTTCTGAAAATCTTCCAACGTTCCCATGATCAAAAAAAATACAAGCGATCAAAAACTTATAGCCTCCACCCACACAAAAATTGAAAAATTTTCCGTTTTCCCACTGAAAATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATATGTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCTGCTACAACTACAGCGACTGCCATATTCGTGACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGAYGGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAATAAACGATTGAGCATTAATTTCTTGTTTTTTGAACATATCACAAAAAATTCTGAATCTAATAACGGACGAAATGTTGCAAAATTCTCGGATCAAATTGAAGGAAATTTGATAAATCCATAAATTTCGGTCACCAACTCTAAAAATGGGTTCTAAGTTCGGCTTAGTATGAAAAATTTTTAAGCTAGTAATATTTTCCTCAAGACTCTTTATTGACGGATCATCAAGAAACGTGTAAACAACAGAGAACGAATCTACATTTTTTCGAGAAACACTTTTTTGCAGAAAAAATAAAACAGAAGAAACACACACATTTCGAGAGTCAGTTGCGTTTTTTTGGATAAATATATGAGAGAGTGACACAAAGTGCTATAAAGAAATCCGTCTACATGTCCTAAACGTTGAGTATTTATCGATCGACCTCTCCGAACACAATATCCATAGTACCAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGTTCTGCTACAACTACAGC</pcr_primer_p1>
		<pcr_primer_p2>AAATTTCCTTCAATTTGATCC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAAGTTCTGCTACAACTACAGCGACTGCCATATTCGTGACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGACGGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAATAAACGATTGAGCATTAATTTCTTGTTTTTTGAACATATCACAAAAAATTCTGAATCTAATAACGGACGAAATGTTGCAAAATTCTCGGATCAAATTGAAGGAAATTT</canonical_amplicon>
		<polymorphic_amplicon>GAAAGTTCTGCTACAACTACAGCGACTGCCATATTCGTGACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGAYGGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAATAAACGATTGAGCATTAATTTCTTGTTTTTTGAACATATCACAAAAAATTCTGAATCTAATAACGGACGAAATGTTGCAAAATTCTCGGATCAAATTGAAGGAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36619</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>370079</contig_pos>
        <strand>+</strand>
        <context>GAAATGTTGC[A/T]AAATTCTCGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGAACATATCACAAAAAATTCTGAATCTAATAACGGACGAAATGTTGC</left_flank>
        <right_flank>AAATTCTCGGATCAAATTGAAGGAAATTTGATAAATCCATAAATTTCGGT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCCCATGATCAAAAAAAATACAAGCGATCAAAAACTTATAGCCTCCACCCACACAAAAATTGAAAAATTTTCCGTTTTCCCACTGAAAATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATATGTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCTGCTACAACTACAGCGACTGCCATATTCGTGACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGACGGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAATAAACGATTGAGCATTAATTTCTTGTTTTTTGAACATATCACAAAAAATTCTGAATCTAATAACGGACGAAATGTTGCAAAATTCTCGGATCAAATTGAAGGAAATTTGATAAATCCATAAATTTCGGTCACCAACTCTAAAAATGGGTTCTAAGTTCGGCTTAGTATGAAAAATTTTTAAGCTAGTAATATTTTCCTCAAGACTCTTTATTGACGGATCATCAAGAAACGTGTAAACAACAGAGAACGAATCTACATTTTTTCGAGAAACACTTTTTTGCAGAAAAAATAAAACAGAAGAAACACACACATTTCGAGAGTCAGTTGCGTTTTTTTGGATAAATATATGAGAGAGTGACACAAAGTGCTATAAAGAAATCCGTCTACATGTCCTAAACGTTGAGTATTTATCGATCGACCTCTCCGAACACAATATCCATAGTACCAATAACAGCGACGATGTCGGCGATGAGAGACATGTAGCACACGTCGTGAATAGCGGCCAAGTGAGCGAATCCTGGAGCGCGAATGAAGCACCTGGAATGATTTTTGGTGAATCAGGATTTTGAAGGCGCAAGA</canonical>
            <polymorphic>GTTCCCATGATCAAAAAAAATACAAGCGATCAAAAACTTATAGCCTCCACCCACACAAAAATTGAAAAATTTTCCGTTTTCCCACTGAAAATCATATGCAAATTGTTTTTATGATTCCTCCTCTTTCTTCGAGTATATATGTAGAACGATCGGTCTCGAAAAATTCAAGATATTTCTGAAATATCCTATTCCAGAAAATGAAGCTCTTCAACTTCCTTCTCCTCGTCTTCATTTTCCCTTCACAATCCGTGGCTGAATGGGGAGGGCCGAAAGAAGGCGAGAGAAAGTTCTGCTACAACTACAGCGACTGCCATATTCGTGACGTCTGCTGGATTGATCACGTCTGCTGGACTCTCCGCGAGATATGGGACGGAACAGCTCCTCAACCAGAGTACTAATTTTGTGATGGATATCGAATAAATAAACGATTGAGCATTAATTTCTTGTTTTTTGAACATATCACAAAAAATTCTGAATCTAATAACGGACGAAATGTTGCWAAATTCTCGGATCAAATTGAAGGAAATTTGATAAATCCATAAATTTCGGTCACCAACTCTAAAAATGGGTTCTAAGTTCGGCTTAGTATGAAAAATTTTTAAGCTAGTAATATTTTCCTCAAGACTCTTTATTGACGGATCATCAAGAAACGTGTAAACAACAGAGAACGAATCTACATTTTTTCGAGAAACACTTTTTTGCAGAAAAAATAAAACAGAAGAAACACACACATTTCGAGAGTCAGTTGCGTTTTTTTGGATAAATATATGAGAGAGTGACACAAAGTGCTATAAAGAAATCCGTCTACATGTCCTAAACGTTGAGTATTTATCGATCGACCTCTCCGAACACAATATCCATAGTACCAATAACAGCGACGATGTCGGCGATGAGAGACATGTAGCACACGTCGTGAATAGCGGCCAAGTGAGCGAATCCTGGAGCGCGAATGAAGCACCTGGAATGATTTTTGGTGAATCAGGATTTTGAAGGCGCAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>400 299 203 98</canonical_bands>
                <polymorphic_bands>603 299 98</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAGCATTAATTTCTTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGTAGATTCGTTCTCTGTTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGAGCATTAATTTCTTGTTTTTTGAACATATCACAAAAAATTCTGAATCTAATAACGGACGAAATGTTGCAAAATTCTCGGATCAAATTGAAGGAAATTTGATAAATCCATAAATTTCGGTCACCAACTCTAAAAATGGGTTCTAAGTTCGGCTTAGTATGAAAAATTTTTAAGCTAGTAATATTTTCCTCAAGACTCTTTATTGACGGATCATCAAGAAACGTGTAAACAACAGAGAACGAATCTACA</canonical_amplicon>
		<polymorphic_amplicon>TTGAGCATTAATTTCTTGTTTTTTGAACATATCACAAAAAATTCTGAATCTAATAACGGACGAAATGTTGCWAAATTCTCGGATCAAATTGAAGGAAATTTGATAAATCCATAAATTTCGGTCACCAACTCTAAAAATGGGTTCTAAGTTCGGCTTAGTATGAAAAATTTTTAAGCTAGTAATATTTTCCTCAAGACTCTTTATTGACGGATCATCAAGAAACGTGTAAACAACAGAGAACGAATCTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36620</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>456201</contig_pos>
        <strand>+</strand>
        <context>CCAATTCTCG[A/T]AAYGGTGTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGAGGTGTTCATAAATCTCGATCAAGCTTCCCAGCGCTTCCAATTCTCG</left_flank>
        <right_flank>AACGGTGTGAAAATGAATTTGAGAGATGAAGATGGGAAATTGGGAGAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCAGTTGTTCGACGTGCTCAGTTCTCTTGTTCGGGGTCGGAATGACAAATTCTAATATTTTCTGTCCTAATCCGTTTTTTTCACTACACTGTGAGAGAAAACAACTTTTGTTCTGAAAACTACAAAGCAGTACGGTAAAAGCTTCTTCGAAACACCGAAAAAGGGTCCACTGATCTGGAACTCTTGGATCTCAAGAGTTCTGTCTTATTCCAAAAAAAGACTGGTCGTTTTATTTTGGAAGAAAAAAGGTACAGTAGTATTTTTCAAGTACCCCTTCTTCTTTTTTCTCCGTTTTTTTTCTTTTCTCGCAATTCCTATTCCATTCGGTCTTCTTTCAATATCCTCACCAATTTTTTTTCCATTCAGTTTTCCTATCTCCGGAATGTGAATTGAGAAAAAAGGATGAGGAAGAAAGGTTGGAAAAGTGTAGCACTACCTATAAAAAAGGAAGAGGTGTTCATAAATCTCGATCAAGCTTCCCAGCGCTTCCAATTCTCGAAACGGTGTGAAAATGAATTTGAGAGATGAAGATGGGAAATTGGGAGAAGAGTTTCCTTCAATTTTTCTTTATTCGTGGTTCTTATTTTATTACCAAAAAGTGCGATTTTTCCTTGAACTTTGTGACAAGTCCAATTTGCTTAGAAAGTAATGAGCCTTATTTATTGAGCCACTTTGTCCGGAAAACTTGAGTACTACGTATCCCGAGGTATTTGATGACAATTGAAATGTGATGTATAGAATTTCAGTGACATGAGCTGAAATAAGAAAAGTTCAGATTCGATTCCAATTGTCTTAAAAGATTTTGATTAATTCAAAATAAATGCAATTTTTTTGAGTTCTAGGAAATGAGGCGAAAATCGAGAATAAATGGTGCTGAAAAAAAGCGTTGTTGATTTCTAGGCAATGAGCTCAAAATTGAAGAATCCAAATTATTAATCAATTTTCGCAAGAATAGGGAAAGTGTTCAATTTAGACCCCGGGATGTTTGAAATAGCACTT</canonical>
            <polymorphic>ACCAGTTGTTCGACGTGCTCAGTTCTCTTGTTCGGGGTCGGAATGACAAATTCTAATATTTTCTGTCCTAATCCGTTTTTTTCACTACACTGTGAGAGAAAACAACTTTTGTTCTGAAAACTACAAAGCAGTACGGTAAAAGCTTCTTCGAAACACCGAAAAAGGGTCCACTGATCTGGAACTCTTGGATCTCAAGAGTTCTGTCTTATTCCAAAAAAAGACTGGTCGTTTTATTTTGGAAGAAAAAAGGTACAGTAGTATTTTTCAAGTACCCCTTCTTCTTTTTTCTCCGTTTTTTTTCTTTTCTCGCAATTCCTATTCCATTCGGTCTTCTTTCAATATCCTCACCAATTTTTTTTCCATTCAGTTTTCCTATCTCCGGAATGTGAATTGAGAAAAAAGGATGAGGAAGAAAGGTTGGAAAAGTGTAGCACTACCTATAAAAAAGGAAGAGGTGTTCATAAATCTCGATCAAGCTTCCCAGCGCTTCCAATTCTCGWAACGGTGTGAAAATGAATTTGAGAGATGAAGATGGGAAATTGGGAGAAGAGTTTCCTTCAATTTTTCTTTATTCGTGGTTCTTATTTTATTACCAAAAAGTGCGATTTTTCCTTGAACTTTGTGACAAGTCCAATTTGCTTAGAAAGTAATGAGCCTTATTTATTGAGCCACTTTGTCCGGAAAACTTGAGTACTACGTATCCCGAGGTATTTGATGACAATTGAAATGTGATGTATAGAATTTCAGTGACATGAGCTGAAATAAGAAAAGTTCAGATTCGATTCCAATTGTCTTAAAAGATTTTGATTAATTCAAAATAAATGCAATTTTTTTGAGTTCTAGGAAATGAGGCGAAAATCGAGAATAAATGGTGCTGAAAAAAAGCGTTGTTGATTTCTAGGCAATGAGCTCAAAATTGAAGAATCCAAATTATTAATCAATTTTCGCAAGAATAGGGAAAGTGTTCAATTTAGACCCCGGGATGTTTGAAATAGCACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>320 282 140 138 80 29 11</canonical_bands>
                <polymorphic_bands>320 311 140 138 80 11</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>186 182 176 158 140 88 29 24 17</canonical_bands>
                <polymorphic_bands>211 186 176 158 140 88 24 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTCGGTCTTCTTTCAATATC</pcr_primer_p1>
		<pcr_primer_p2>AGAAAAATTGAAGGAAACTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CATTCGGTCTTCTTTCAATATCCTCACCAATTTTTTTTCCATTCAGTTTTCCTATCTCCGGAATGTGAATTGAGAAAAAAGGATGAGGAAGAAAGGTTGGAAAAGTGTAGCACTACCTATAAAAAAGGAAGAGGTGTTCATAAATCTCGATCAAGCTTCCCAGCGCTTCCAATTCTCGAAACGGTGTGAAAATGAATTTGAGAGATGAAGATGGGAAATTGGGAGAAGAGTTTCCTTCAATTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>CATTCGGTCTTCTTTCAATATCCTCACCAATTTTTTTTCCATTCAGTTTTCCTATCTCCGGAATGTGAATTGAGAAAAAAGGATGAGGAAGAAAGGTTGGAAAAGTGTAGCACTACCTATAAAAAAGGAAGAGGTGTTCATAAATCTCGATCAAGCTTCCCAGCGCTTCCAATTCTCGWAACGGTGTGAAAATGAATTTGAGAGATGAAGATGGGAAATTGGGAGAAGAGTTTCCTTCAATTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36621</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>456204</contig_pos>
        <strand>+</strand>
        <context>ATTCTCGWAA[C/T]GGTGTGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGTGTTCATAAATCTCGATCAAGCTTCCCAGCGCTTCCAATTCTCGAAA</left_flank>
        <right_flank>GGTGTGAAAATGAATTTGAGAGATGAAGATGGGAAATTGGGAGAAGAGTT</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTGTTCGACGTGCTCAGTTCTCTTGTTCGGGGTCGGAATGACAAATTCTAATATTTTCTGTCCTAATCCGTTTTTTTCACTACACTGTGAGAGAAAACAACTTTTGTTCTGAAAACTACAAAGCAGTACGGTAAAAGCTTCTTCGAAACACCGAAAAAGGGTCCACTGATCTGGAACTCTTGGATCTCAAGAGTTCTGTCTTATTCCAAAAAAAGACTGGTCGTTTTATTTTGGAAGAAAAAAGGTACAGTAGTATTTTTCAAGTACCCCTTCTTCTTTTTTCTCCGTTTTTTTTCTTTTCTCGCAATTCCTATTCCATTCGGTCTTCTTTCAATATCCTCACCAATTTTTTTTCCATTCAGTTTTCCTATCTCCGGAATGTGAATTGAGAAAAAAGGATGAGGAAGAAAGGTTGGAAAAGTGTAGCACTACCTATAAAAAAGGAAGAGGTGTTCATAAATCTCGATCAAGCTTCCCAGCGCTTCCAATTCTCGAAACGGTGTGAAAATGAATTTGAGAGATGAAGATGGGAAATTGGGAGAAGAGTTTCCTTCAATTTTTCTTTATTCGTGGTTCTTATTTTATTACCAAAAAGTGCGATTTTTCCTTGAACTTTGTGACAAGTCCAATTTGCTTAGAAAGTAATGAGCCTTATTTATTGAGCCACTTTGTCCGGAAAACTTGAGTACTACGTATCCCGAGGTATTTGATGACAATTGAAATGTGATGTATAGAATTTCAGTGACATGAGCTGAAATAAGAAAAGTTCAGATTCGATTCCAATTGTCTTAAAAGATTTTGATTAATTCAAAATAAATGCAATTTTTTTGAGTTCTAGGAAATGAGGCGAAAATCGAGAATAAATGGTGCTGAAAAAAAGCGTTGTTGATTTCTAGGCAATGAGCTCAAAATTGAAGAATCCAAATTATTAATCAATTTTCGCAAGAATAGGGAAAGTGTTCAATTTAGACCCCGGGATGTTTGAAATAGCACTTTCA</canonical>
            <polymorphic>AGTTGTTCGACGTGCTCAGTTCTCTTGTTCGGGGTCGGAATGACAAATTCTAATATTTTCTGTCCTAATCCGTTTTTTTCACTACACTGTGAGAGAAAACAACTTTTGTTCTGAAAACTACAAAGCAGTACGGTAAAAGCTTCTTCGAAACACCGAAAAAGGGTCCACTGATCTGGAACTCTTGGATCTCAAGAGTTCTGTCTTATTCCAAAAAAAGACTGGTCGTTTTATTTTGGAAGAAAAAAGGTACAGTAGTATTTTTCAAGTACCCCTTCTTCTTTTTTCTCCGTTTTTTTTCTTTTCTCGCAATTCCTATTCCATTCGGTCTTCTTTCAATATCCTCACCAATTTTTTTTCCATTCAGTTTTCCTATCTCCGGAATGTGAATTGAGAAAAAAGGATGAGGAAGAAAGGTTGGAAAAGTGTAGCACTACCTATAAAAAAGGAAGAGGTGTTCATAAATCTCGATCAAGCTTCCCAGCGCTTCCAATTCTCGAAAYGGTGTGAAAATGAATTTGAGAGATGAAGATGGGAAATTGGGAGAAGAGTTTCCTTCAATTTTTCTTTATTCGTGGTTCTTATTTTATTACCAAAAAGTGCGATTTTTCCTTGAACTTTGTGACAAGTCCAATTTGCTTAGAAAGTAATGAGCCTTATTTATTGAGCCACTTTGTCCGGAAAACTTGAGTACTACGTATCCCGAGGTATTTGATGACAATTGAAATGTGATGTATAGAATTTCAGTGACATGAGCTGAAATAAGAAAAGTTCAGATTCGATTCCAATTGTCTTAAAAGATTTTGATTAATTCAAAATAAATGCAATTTTTTTGAGTTCTAGGAAATGAGGCGAAAATCGAGAATAAATGGTGCTGAAAAAAAGCGTTGTTGATTTCTAGGCAATGAGCTCAAAATTGAAGAATCCAAATTATTAATCAATTTTCGCAAGAATAGGGAAAGTGTTCAATTTAGACCCCGGGATGTTTGAAATAGCACTTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>499 250 119 88 44</canonical_bands>
                <polymorphic_bands>749 119 88 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTCGGTCTTCTTTCAATATC</pcr_primer_p1>
		<pcr_primer_p2>AGAAAAATTGAAGGAAACTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CATTCGGTCTTCTTTCAATATCCTCACCAATTTTTTTTCCATTCAGTTTTCCTATCTCCGGAATGTGAATTGAGAAAAAAGGATGAGGAAGAAAGGTTGGAAAAGTGTAGCACTACCTATAAAAAAGGAAGAGGTGTTCATAAATCTCGATCAAGCTTCCCAGCGCTTCCAATTCTCGAAACGGTGTGAAAATGAATTTGAGAGATGAAGATGGGAAATTGGGAGAAGAGTTTCCTTCAATTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>CATTCGGTCTTCTTTCAATATCCTCACCAATTTTTTTTCCATTCAGTTTTCCTATCTCCGGAATGTGAATTGAGAAAAAAGGATGAGGAAGAAAGGTTGGAAAAGTGTAGCACTACCTATAAAAAAGGAAGAGGTGTTCATAAATCTCGATCAAGCTTCCCAGCGCTTCCAATTCTCGAAAYGGTGTGAAAATGAATTTGAGAGATGAAGATGGGAAATTGGGAGAAGAGTTTCCTTCAATTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36622</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>471061</contig_pos>
        <strand></strand>
        <context>AGTGTttttt[C/T]ttgatttcgg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTAAAAACATTTTTAAATAGAATATGATATCATATGTGAGTGTTTTTT</left_flank>
        <right_flank>TTGATTTCGGACCACTTTGATCATTTTTGAGAGTCTGGAGCTCGGCTATA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAACACAAACACAACAAGTGTACACACAACGCTAAAAAATTAGCTCTTTTCTTAAGGTGGACAGAATTAGGCCCAAATTTCGCATCGCTAAGACATTGTTTGCCAATGTTTATGTTTTTGTTGGAATTCCCCCATCTAAATATGGATATTCCCCCCATCTAAATATGGATGTCCGGGTTAAGAGGTTATGCATATTATTTTTTCAAAGTATCATATTCTTCAAAGTGCAGAGCAAATGCATGAAAACAATGAAAAATACGGGATGCATTTCGGATAATTCAGTGATTGAGTGTTGTTTGTGGAAGAGAGAGTACAAAAAACACCGAGATCATTGAAATATTTCGTATATGATTTTTGGGAGAAATTTTATTTTTTACCTGATAACGAGACGTTCAACGTCGTATTGGCCCATGATAACTCATGGACTCATTACAGCTTTTTTACATCTTCTAAAAACATTTTTAAATAGAATATGATATCATATGTGAGTGTTTTTTCTTGATTTCGGACCACTTTGATCATTTTTGAGAGTCTGGAGCTCGGCTATAAAATTTCCAATGACTTTTAAAATTTCAGAAGATGTAAAACAGATCTAGACTGAAAATTGTGCTTTTACTTAATTTTCCGATAACTTCTAATTTTCTAGATATGTGCCGATTTCTGAAAAACGACTAGAAGGAGTATCTTCCATAAATCGGCAAATAACTGAAAAACTAGGATTTTTCAAAAATTCTGTGAATGCAAAATTTACAATCTACCTCTGTTATAAACCCTCTAAAGTTCTGAAAATGATCGGAAACTTGAAAACCGAGCTCCAGAATCCTGAAAATGGTCAAAATGGTCGGAAATCTAGAAATACGTTTTTATAACTTATTGACCGCTACTGAATGATTTTCAGGAAGAAATCTTGTTTTATCGTAGCCTTCTATTTTATCTTAAAGCGAAGCATTCTATTTTCTTAAAACATCGTACTATTGGTCGCACGGATTCACGGAGAA</canonical>
            <polymorphic>AAAAACACAAACACAACAAGTGTACACACAACGCTAAAAAATTAGCTCTTTTCTTAAGGTGGACAGAATTAGGCCCAAATTTCGCATCGCTAAGACATTGTTTGCCAATGTTTATGTTTTTGTTGGAATTCCCCCATCTAAATATGGATATTCCCCCCATCTAAATATGGATGTCCGGGTTAAGAGGTTATGCATATTATTTTTTCAAAGTATCATATTCTTCAAAGTGCAGAGCAAATGCATGAAAACAATGAAAAATACGGGATGCATTTCGGATAATTCAGTGATTGAGTGTTGTTTGTGGAAGAGAGAGTACAAAAAACACCGAGATCATTGAAATATTTCGTATATGATTTTTGGGAGAAATTTTATTTTTTACCTGATAACGAGACGTTCAACGTCGTATTGGCCCATGATAACTCATGGACTCATTACAGCTTTTTTACATCTTCTAAAAACATTTTTAAATAGAATATGATATCATATGTGAGTGTTTTTTYTTGATTTCGGACCACTTTGATCATTTTTGAGAGTCTGGAGCTCGGCTATAAAATTTCCAATGACTTTTAAAATTTCAGAAGATGTAAAACAGATCTAGACTGAAAATTGTGCTTTTACTTAATTTTCCGATAACTTCTAATTTTCTAGATATGTGCCGATTTCTGAAAAACGACTAGAAGGAGTATCTTCCATAAATCGGCAAATAACTGAAAAACTAGGATTTTTCAAAAATTCTGTGAATGCAAAATTTACAATCTACCTCTGTTATAAACCCTCTAAAGTTCTGAAAATGATCGGAAACTTGAAAACCGAGCTCCAGAATCCTGAAAATGGTCAAAATGGTCGGAAATCTAGAAATACGTTTTTATAACTTATTGACCGCTACTGAATGATTTTCAGGAAGAAATCTTGTTTTATCGTAGCCTTCTATTTTATCTTAAAGCGAAGCATTCTATTTTCTTAAAACATCGTACTATTGGTCGCACGGATTCACGGAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>500 172 102 60 50 46 35 28 7</canonical_bands>
                <polymorphic_bands>535 172 102 60 50 46 28 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGGACTCATTACAGCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAACAAGATTTCTTCCTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>494</pcr_amplicon_size>
		<canonical_amplicon>CATGGACTCATTACAGCTTTTTTACATCTTCTAAAAACATTTTTAAATAGAATATGATATCATATGTGAGTGTTTTTTCTTGATTTCGGACCACTTTGATCATTTTTGAGAGTCTGGAGCTCGGCTATAAAATTTCCAATGACTTTTAAAATTTCAGAAGATGTAAAACAGATCTAGACTGAAAATTGTGCTTTTACTTAATTTTCCGATAACTTCTAATTTTCTAGATATGTGCCGATTTCTGAAAAACGACTAGAAGGAGTATCTTCCATAAATCGGCAAATAACTGAAAAACTAGGATTTTTCAAAAATTCTGTGAATGCAAAATTTACAATCTACCTCTGTTATAAACCCTCTAAAGTTCTGAAAATGATCGGAAACTTGAAAACCGAGCTCCAGAATCCTGAAAATGGTCAAAATGGTCGGAAATCTAGAAATACGTTTTTATAACTTATTGACCGCTACTGAATGATTTTCAGGAAGAAATCTTGTTT</canonical_amplicon>
		<polymorphic_amplicon>CATGGACTCATTACAGCTTTTTTACATCTTCTAAAAACATTTTTAAATAGAATATGATATCATATGTGAGTGTTTTTTYTTGATTTCGGACCACTTTGATCATTTTTGAGAGTCTGGAGCTCGGCTATAAAATTTCCAATGACTTTTAAAATTTCAGAAGATGTAAAACAGATCTAGACTGAAAATTGTGCTTTTACTTAATTTTCCGATAACTTCTAATTTTCTAGATATGTGCCGATTTCTGAAAAACGACTAGAAGGAGTATCTTCCATAAATCGGCAAATAACTGAAAAACTAGGATTTTTCAAAAATTCTGTGAATGCAAAATTTACAATCTACCTCTGTTATAAACCCTCTAAAGTTCTGAAAATGATCGGAAACTTGAAAACCGAGCTCCAGAATCCTGAAAATGGTCAAAATGGTCGGAAATCTAGAAATACGTTTTTATAACTTATTGACCGCTACTGAATGATTTTCAGGAAGAAATCTTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36623</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>497358</contig_pos>
        <strand>+</strand>
        <context>AAGGATTTAT[C/T]AAAAACAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGAATCCTTTTTTTTGCAAGATATATTATTCCATTTCCAAGGATTTAT</left_flank>
        <right_flank>AAAAACAAAAATTAAAAAGGGTTCAAAAGCTTATACCACCATGCTTCCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCCTAGTTTGTGCTGATTTCTGAAAAACACTTTCTTCCGTTTCCAATACAAAAGCAGACAAAAATGGGTTTGTCGAAAATCTGCAAAAAGCTGAAAAAGAAGGACATTTCAAGAGTACTGTAATATAAAGTTTTCAAGCTAGATCTGTTTTCTACCCTCCAGAAAAATTTCAAAGTGATCCGAAATTTGTAAGCCAAGCTCGAGTCTCTGGGAAATGGTCAAAGCTGCCGAAATTCAACTAGAAAATAAGTTTTTGTATATCTTATCGACTAGATCCTATTGATTTCTGAAACTGTCCTACTCAATAGCTCAATTTTCGAAAGCACCACATAATATTTCTTAGACTTCTAGTATCAAGACTTTTGTCACCTTCAATGAGGAACAAATAATTCATGAGTCTTCTCACTCTTAAGTCTCGACGACACTTTTTAAAGAGCTGTGAAAAGCATTGAATCCTTTTTTTTGCAAGATATATTATTCCATTTCCAAGGATTTATAAAAAACAAAAATTAAAAAGGGTTCAAAAGCTTATACCACCATGCTTCCACTTTTTCTTATGACCTACTGATGGCAACACTCGTTTCATTCATTCACCTCTTATCATTTGACTTGTTGACACTGGAAAATTCAACCTCACATTCACTTCTCTCATCAACTCATCATCGTCATTTCAGGAATTTCGAGTGAATTCTTTGGAAGCAACACACACACGCCCGAAACTCTCAACGTCTTCGTCTGGTTTGTGCAGTGAGCTGTTAATTTTAACGCTTACGAAACTGGAGCCCCACTACGACCAGTACTACGACCCTTCATACGACAGCCATCTGTATGTAAGTTGTGTTGTTTTAATTTTCAGTATTGTGTTGTGAAACCCTCTAGAAAATTCTACGGTAGGAATCCAGATTCTGACAATCAGTCTTCAGAACGGGCCCAGAAGGGCCCAGCCATAATTTTTTAGGATCAATATTGTTTGACCAATTGAATCAGATATGATAATA</canonical>
            <polymorphic>TATCCTAGTTTGTGCTGATTTCTGAAAAACACTTTCTTCCGTTTCCAATACAAAAGCAGACAAAAATGGGTTTGTCGAAAATCTGCAAAAAGCTGAAAAAGAAGGACATTTCAAGAGTACTGTAATATAAAGTTTTCAAGCTAGATCTGTTTTCTACCCTCCAGAAAAATTTCAAAGTGATCCGAAATTTGTAAGCCAAGCTCGAGTCTCTGGGAAATGGTCAAAGCTGCCGAAATTCAACTAGAAAATAAGTTTTTGTATATCTTATCGACTAGATCCTATTGATTTCTGAAACTGTCCTACTCAATAGCTCAATTTTCGAAAGCACCACATAATATTTCTTAGACTTCTAGTATCAAGACTTTTGTCACCTTCAATGAGGAACAAATAATTCATGAGTCTTCTCACTCTTAAGTCTCGACGACACTTTTTAAAGAGCTGTGAAAAGCATTGAATCCTTTTTTTTGCAAGATATATTATTCCATTTCCAAGGATTTATYAAAAACAAAAATTAAAAAGGGTTCAAAAGCTTATACCACCATGCTTCCACTTTTTCTTATGACCTACTGATGGCAACACTCGTTTCATTCATTCACCTCTTATCATTTGACTTGTTGACACTGGAAAATTCAACCTCACATTCACTTCTCTCATCAACTCATCATCGTCATTTCAGGAATTTCGAGTGAATTCTTTGGAAGCAACACACACACGCCCGAAACTCTCAACGTCTTCGTCTGGTTTGTGCAGTGAGCTGTTAATTTTAACGCTTACGAAACTGGAGCCCCACTACGACCAGTACTACGACCCTTCATACGACAGCCATCTGTATGTAAGTTGTGTTGTTTTAATTTTCAGTATTGTGTTGTGAAACCCTCTAGAAAATTCTACGGTAGGAATCCAGATTCTGACAATCAGTCTTCAGAACGGGCCCAGAAGGGCCCAGCCATAATTTTTTAGGATCAATATTGTTTGACCAATTGAATCAGATATGATAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCAATGAGGAACAAATAATTC</pcr_primer_p1>
		<pcr_primer_p2>TGTCAACAAGTCAAATGATAAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTCAATGAGGAACAAATAATTCATGAGTCTTCTCACTCTTAAGTCTCGACGACACTTTTTAAAGAGCTGTGAAAAGCATTGAATCCTTTTTTTTGCAAGATATATTATTCCATTTCCAAGGATTTATAAAAAACAAAAATTAAAAAGGGTTCAAAAGCTTATACCACCATGCTTCCACTTTTTCTTATGACCTACTGATGGCAACACTCGTTTCATTCATTCACCTCTTATCATTTGACTTGTTGACA</canonical_amplicon>
		<polymorphic_amplicon>CTTCAATGAGGAACAAATAATTCATGAGTCTTCTCACTCTTAAGTCTCGACGACACTTTTTAAAGAGCTGTGAAAAGCATTGAATCCTTTTTTTTGCAAGATATATTATTCCATTTCCAAGGATTTATYAAAAACAAAAATTAAAAAGGGTTCAAAAGCTTATACCACCATGCTTCCACTTTTTCTTATGACCTACTGATGGCAACACTCGTTTCATTCATTCACCTCTTATCATTTGACTTGTTGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36624</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>550526</contig_pos>
        <strand>+</strand>
        <context>TAGAGCGTTG[C/T]CTATTTTGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGTACGCATTCTGAATAACTATTCTCATAATAAGTGAATAGAGCGTTG</left_flank>
        <right_flank>CTATTTTGTGTTTTGTATGTCATGTTAGTTTCCCAGAGGAAAAATCCGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGTTAGACCGGACCCTTTTTTTTCTAAATAAAATTAAGAATTGGTGTACGATTATGATGTGAAAACTAAACTGGAACACACTATTCAAAATAAAAGAAAAAATGATTATTTGATGATTTGTGTTTTTTTTTTTGAATTTTTTAAATTGAAGACGAAACCGATTTTCGAGTTTTGGATCGTGTCTTGGAGAGTTTGACATAAGCTAAGCTGGAAACAATTGGAGATATTTCAATTGATAATTAGGACAGTTGGGCTTGAGGTCACTTTCTTTGGTTGGTTAACAGTGGCCAAAGTGATCGGAACATCACTTGGGACTTTCAAACGCAGGAAGCGACGGATCATTCGACGAGAAAGTGGAGTGTGAAGATAGTAGATGAAATAGTTCATAAGTGCGATGGACTCCATACGAAAATAGAAATAGCCATCACGAAATCCTTCTGGGAACCATTGGTACGCATTCTGAATAACTATTCTCATAATAAGTGAATAGAGCGTTGTCTATTTTGTGTTTTGTATGTCATGTTAGTTTCCCAGAGGAAAAATCCGTCAGACCTAATATGGCCGGCCATAAAAATTTTGGGTATGGCAGGTCGCATCACAGTTTGAAAACTGTCTAGCGCTAGTAACAATATAGATTTTTCAATGGAAAAATTGAACTTACCGGGAAGATTCTGGTAATCAATGCTCCTAGCTCATAGATCGACAAGAAGATAGCAACCGAAAACGTTTGACGCATCATTGTAAAATCTTTTTTGTTTTTTTGTTGTGATGAGATGCTTGTACTTGAGGTCGATGTGTTTGACAATGTGATGGGCTGCACTTGGGAGCGGACTGCAATTTTATTTTTAAAATTCTGAATCAACAATACACTTACAGTTGTAATACCAGTTTTTGATTCTTTCATAGGTCTTTTGGCGTTTAAAACGGACGTGGAAGACAATGCCCATGTTAATTACCATGCACGACAACGGGATCACAATGGCGTATGTGTTTTGGAA</canonical>
            <polymorphic>ATTGTTAGACCGGACCCTTTTTTTTCTAAATAAAATTAAGAATTGGTGTACGATTATGATGTGAAAACTAAACTGGAACACACTATTCAAAATAAAAGAAAAAATGATTATTTGATGATTTGTGTTTTTTTTTTTGAATTTTTTAAATTGAAGACGAAACCGATTTTCGAGTTTTGGATCGTGTCTTGGAGAGTTTGACATAAGCTAAGCTGGAAACAATTGGAGATATTTCAATTGATAATTAGGACAGTTGGGCTTGAGGTCACTTTCTTTGGTTGGTTAACAGTGGCCAAAGTGATCGGAACATCACTTGGGACTTTCAAACGCAGGAAGCGACGGATCATTCGACGAGAAAGTGGAGTGTGAAGATAGTAGATGAAATAGTTCATAAGTGCGATGGACTCCATACGAAAATAGAAATAGCCATCACGAAATCCTTCTGGGAACCATTGGTACGCATTCTGAATAACTATTCTCATAATAAGTGAATAGAGCGTTGYCTATTTTGTGTTTTGTATGTCATGTTAGTTTCCCAGAGGAAAAATCCGTCAGACCTAATATGGCCGGCCATAAAAATTTTGGGTATGGCAGGTCGCATCACAGTTTGAAAACTGTCTAGCGCTAGTAACAATATAGATTTTTCAATGGAAAAATTGAACTTACCGGGAAGATTCTGGTAATCAATGCTCCTAGCTCATAGATCGACAAGAAGATAGCAACCGAAAACGTTTGACGCATCATTGTAAAATCTTTTTTGTTTTTTTGTTGTGATGAGATGCTTGTACTTGAGGTCGATGTGTTTGACAATGTGATGGGCTGCACTTGGGAGCGGACTGCAATTTTATTTTTAAAATTCTGAATCAACAATACACTTACAGTTGTAATACCAGTTTTTGATTCTTTCATAGGTCTTTTGGCGTTTAAAACGGACGTGGAAGACAATGCCCATGTTAATTACCATGCACGACAACGGGATCACAATGGCGTATGTGTTTTGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGTACGCATTCTGAATAAC</pcr_primer_p1>
		<pcr_primer_p2>TATGAGCTAGGAGCATTGATTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGGTACGCATTCTGAATAACTATTCTCATAATAAGTGAATAGAGCGTTGTCTATTTTGTGTTTTGTATGTCATGTTAGTTTCCCAGAGGAAAAATCCGTCAGACCTAATATGGCCGGCCATAAAAATTTTGGGTATGGCAGGTCGCATCACAGTTTGAAAACTGTCTAGCGCTAGTAACAATATAGATTTTTCAATGGAAAAATTGAACTTACCGGGAAGATTCTGGTAATCAATGCTCCTAGCTCATA</canonical_amplicon>
		<polymorphic_amplicon>TTGGTACGCATTCTGAATAACTATTCTCATAATAAGTGAATAGAGCGTTGYCTATTTTGTGTTTTGTATGTCATGTTAGTTTCCCAGAGGAAAAATCCGTCAGACCTAATATGGCCGGCCATAAAAATTTTGGGTATGGCAGGTCGCATCACAGTTTGAAAACTGTCTAGCGCTAGTAACAATATAGATTTTTCAATGGAAAAATTGAACTTACCGGGAAGATTCTGGTAATCAATGCTCCTAGCTCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36625</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>553844</contig_pos>
        <strand>+</strand>
        <context>CTCTGTATTG[A/G]nnnnnnnnnA</context>
        <canonical_base>N</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATTG</left_flank>
        <right_flank>NNNNNNNNNAGCTGATGTTTTGTTCAGGAAGCATTTCAATTCCAAATGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGGCGAAACGTAAGGATGACAGCCTCATCATACAAAGGAATGACACGGGTCGCGATGTTGACACTTGATTGTCATCCTGACATTGCGCCGAGGAAATTCACAGCTGATGTTTTGTTCAGGAAGCATTTCAATTCCAAATGTGGCCGAATGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAATCCCCGGTTCGGCCCATTTCTTTTTTCATTTTCGATAGTTTGATGATTTCTCAAAACCTTTTCAGGCTCAAAAATGTTTATCTTTTCAAAAATGTTCTCAAAAATGTTTTTTTGTTATTGATTTCGGCTTCATTTCTTTCACTTGCCACACGTTTTCTGCTAAATTTTGAGTTCAAATCTCCTGTAGACGTCGGGAAAATGAAATTTATGCGACCTAGAAAATTCGTCAAAAAATTTGGAACGCTTCACGAATTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATTGNNNNNNNNNNAGCTGATGTTTTGTTCAGGAAGCATTTCAATTCCAAATGTGGCCGAATGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAATCCCCGGTTCGGCCCATTTCTTTTTTCATTTTCGATAGTTTGATGATTTCTCAAAACCTTTTCAGGCTCAAAAATGTTTATCTTTTTCCGTTTGGTTTTTTATTTTTGGATAGTTATTGATTTCGGCTTCATTTCTTTTACTTGCCACACGTTTTCTGCTAAATTTTGAGTTCAAATCTCCTGTAGACGTCGGGAAAATGAAATTTATGCGACCTAGAAAATTCGTCAAAAAATTTGGAACGCTTCACGAATTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATTGTTCCAATTTTAGTATATGTTCTCGGAAGAACAAGACCTCTGCAAACGCGAGGCGTATATAAAGGGTAGGGTAGACAAGCGGACGACATCTTCCGG</canonical>
            <polymorphic>GCGGCGAAACGTAAGGATGACAGCCTCATCATACAAAGGAATGACACGGGTCGCGATGTTGACACTTGATTGTCATCCTGACATTGCGCCGAGGAAATTCACAGCTGATGTTTTGTTCAGGAAGCATTTCAATTCCAAATGTGGCCGAATGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAATCCCCGGTTCGGCCCATTTCTTTTTTCATTTTCGATAGTTTGATGATTTCTCAAAACCTTTTCAGGCTCAAAAATGTTTATCTTTTCAAAAATGTTCTCAAAAATGTTTTTTTGTTATTGATTTCGGCTTCATTTCTTTCACTTGCCACACGTTTTCTGCTAAATTTTGAGTTCAAATCTCCTGTAGACGTCGGGAAAATGAAATTTATGCGACCTAGAAAATTCGTCAAAAAATTTGGAACGCTTCACGAATTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATTGRNNNNNNNNNAGCTGATGTTTTGTTCAGGAAGCATTTCAATTCCAAATGTGGCCGAATGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAATCCCCGGTTCGGCCCATTTCTTTTTTCATTTTCGATAGTTTGATGATTTCTCAAAACCTTTTCAGGCTCAAAAATGTTTATCTTTTTCCGTTTGGTTTTTTATTTTTGGATAGTTATTGATTTCGGCTTCATTTCTTTTACTTGCCACACGTTTTCTGCTAAATTTTGAGTTCAAATCTCCTGTAGACGTCGGGAAAATGAAATTTATGCGACCTAGAAAATTCGTCAAAAAATTTGGAACGCTTCACGAATTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATTGTTCCAATTTTAGTATATGTTCTCGGAAGAACAAGACCTCTGCAAACGCGAGGCGTATATAAAGGGTAGGGTAGACAAGCGGACGACATCTTCCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATTTATGCGACCTAGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATCAAACTATCGAAAATGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAAATTTATGCGACCTAGAAAATTCGTCAAAAAATTTGGAACGCTTCACGAATTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATTGNNNNNNNNNNAGCTGATGTTTTGTTCAGGAAGCATTTCAATTCCAAATGTGGCCGAATGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAATCCCCGGTTCGGCCCATTTCTTTTTTCATTTTCGATAGTTTGAT</canonical_amplicon>
		<polymorphic_amplicon>GAAATTTATGCGACCTAGAAAATTCGTCAAAAAATTTGGAACGCTTCACGAATTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATTGRNNNNNNNNNAGCTGATGTTTTGTTCAGGAAGCATTTCAATTCCAAATGTGGCCGAATGGTCTAGTGGTATGATTCTCGCTTTGGGTGCGAGAGGTCCCGGGTTCAATCCCCGGTTCGGCCCATTTCTTTTTTCATTTTCGATAGTTTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36626</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>611317</contig_pos>
        <strand></strand>
        <context>gaagcttggc[T/C]tgcatgtgtc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CACTTAAAAGTTCGGTCATTTTGACTATAGTCAGTAGCCTGAAGCTTGGC</left_flank>
        <right_flank>TGCATGTGTCCGATCACTTTGAAAATTTTGGAGGTTGTAATACAGACCTA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAATCATTTCCGTTTTACTGACTTCATTTTCCAGCCTGACCAGCTTATGTCCAATGTACAAACCCTAAATAGAGTATTTTTCACGGAAAAAAAGTACTTTTCGTATAGATCATCCTCTCTTCACATGACCGATGCGTGCCCGCTCGAAAACCACAAAACACTCAAAAGTGAACCTGGTGAATCGGAAAGAAGAGATAAAAACTCTTACAACTTTACGGCGGTAGCGCGAACAGAGAACAAACTGTAATCGGTCCGCAGTGGAAGAAATGTGACTATGATGTGTAAATATGCGGTATTATTTGAGGGCACCTATAGCGTAGTCTTACGGAGGTTATGAAAAAATGAATGCTTTCTTGGAAAAGTGCAAGGAGAGGGATGATAAAAACAAAAATGATGAAATCTCAACAATAAAATGATATGAACGAGTTGTGGAAAAACAGTTATGATCCACTTAAAAGTTCGGTCATTTTGACTATAGTCAGTAGCCTGAAGCTTGGCTTGCATGTGTCCGATCACTTTGAAAATTTTGGAGGTTGTAATACAGACCTAGATTTAAAACTCTGTTTTCACAGAATTTTTTGAAAATTCCTCGTTTTTCAGCTATTTGCTGATTTCTGGAAGACACCCCTTTTTGACCCGTTTTTGTACTGGAAGCGTGAAAAAATAAGTGTTTTTCAAAAATCGGCCAATAGCTGAAAAACTAAGTATTTTTAAATGTCAAGTGTTCAAACTAGGTCTGTTTTACACACTCCAAAATGTTCACAGTGATCTGAAGTTTGATAGCTCTACACTCTTGAAAATGGTCAAGAATGCCGAAAATCGATTATACCATTGACCTTTACATACTGTAGATTCCCCTCGAGGAGTTGATTTTGTGAACCTGCCGCGCCTAAGCCAACTAAAATACAGTATAACGATAGGAACACGCTATATGGACACTATACTGTACACCGTCATTTCAGAATGCCTAGCGTGATTCCAAAAATTATAGTCTGCACT</canonical>
            <polymorphic>GCAATCATTTCCGTTTTACTGACTTCATTTTCCAGCCTGACCAGCTTATGTCCAATGTACAAACCCTAAATAGAGTATTTTTCACGGAAAAAAAGTACTTTTCGTATAGATCATCCTCTCTTCACATGACCGATGCGTGCCCGCTCGAAAACCACAAAACACTCAAAAGTGAACCTGGTGAATCGGAAAGAAGAGATAAAAACTCTTACAACTTTACGGCGGTAGCGCGAACAGAGAACAAACTGTAATCGGTCCGCAGTGGAAGAAATGTGACTATGATGTGTAAATATGCGGTATTATTTGAGGGCACCTATAGCGTAGTCTTACGGAGGTTATGAAAAAATGAATGCTTTCTTGGAAAAGTGCAAGGAGAGGGATGATAAAAACAAAAATGATGAAATCTCAACAATAAAATGATATGAACGAGTTGTGGAAAAACAGTTATGATCCACTTAAAAGTTCGGTCATTTTGACTATAGTCAGTAGCCTGAAGCTTGGCYTGCATGTGTCCGATCACTTTGAAAATTTTGGAGGTTGTAATACAGACCTAGATTTAAAACTCTGTTTTCACAGAATTTTTTGAAAATTCCTCGTTTTTCAGCTATTTGCTGATTTCTGGAAGACACCCCTTTTTGACCCGTTTTTGTACTGGAAGCGTGAAAAAATAAGTGTTTTTCAAAAATCGGCCAATAGCTGAAAAACTAAGTATTTTTAAATGTCAAGTGTTCAAACTAGGTCTGTTTTACACACTCCAAAATGTTCACAGTGATCTGAAGTTTGATAGCTCTACACTCTTGAAAATGGTCAAGAATGCCGAAAATCGATTATACCATTGACCTTTACATACTGTAGATTCCCCTCGAGGAGTTGATTTTGTGAACCTGCCGCGCCTAAGCCAACTAAAATACAGTATAACGATAGGAACACGCTATATGGACACTATACTGTACACCGTCATTTCAGAATGCCTAGCGTGATTCCAAAAATTATAGTCTGCACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>442 111 105 103 91 85 35 9 7 7 5</canonical_bands>
                <polymorphic_bands>442 111 108 105 91 85 35 9 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACAGTTATGATCCACTTAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTACAGTATGTAAAGGTCAATGGT</pcr_primer_p2>
		<pcr_amplicon_size>419</pcr_amplicon_size>
		<canonical_amplicon>AAAAACAGTTATGATCCACTTAAAAGTTCGGTCATTTTGACTATAGTCAGTAGCCTGAAGCTTGGCTTGCATGTGTCCGATCACTTTGAAAATTTTGGAGGTTGTAATACAGACCTAGATTTAAAACTCTGTTTTCACAGAATTTTTTGAAAATTCCTCGTTTTTCAGCTATTTGCTGATTTCTGGAAGACACCCCTTTTTGACCCGTTTTTGTACTGGAAGCGTGAAAAAATAAGTGTTTTTCAAAAATCGGCCAATAGCTGAAAAACTAAGTATTTTTAAATGTCAAGTGTTCAAACTAGGTCTGTTTTACACACTCCAAAATGTTCACAGTGATCTGAAGTTTGATAGCTCTACACTCTTGAAAATGGTCAAGAATGCCGAAAATCGATTATACCATTGACCTTTACATACTGTAG</canonical_amplicon>
		<polymorphic_amplicon>AAAAACAGTTATGATCCACTTAAAAGTTCGGTCATTTTGACTATAGTCAGTAGCCTGAAGCTTGGCYTGCATGTGTCCGATCACTTTGAAAATTTTGGAGGTTGTAATACAGACCTAGATTTAAAACTCTGTTTTCACAGAATTTTTTGAAAATTCCTCGTTTTTCAGCTATTTGCTGATTTCTGGAAGACACCCCTTTTTGACCCGTTTTTGTACTGGAAGCGTGAAAAAATAAGTGTTTTTCAAAAATCGGCCAATAGCTGAAAAACTAAGTATTTTTAAATGTCAAGTGTTCAAACTAGGTCTGTTTTACACACTCCAAAATGTTCACAGTGATCTGAAGTTTGATAGCTCTACACTCTTGAAAATGGTCAAGAATGCCGAAAATCGATTATACCATTGACCTTTACATACTGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36627</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>613159</contig_pos>
        <strand>+</strand>
        <context>AACTGTTCCG[C/T]TGCCGTTCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATAAATAAATAAAGAATAAAGAATACGGTAATTTTCGAAACTGTTCCG</left_flank>
        <right_flank>TGCCGTTCACAATTTTTTATTGAGTAGCTTCCTATTTGCAAGTAATACCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCCCCAGCGGCAGCAGAGGACACGGAATAGAAATCAGGGGTTCAGGAAATAATATTAGCAGTTTGTCAGATGTTTTAAAAATTGACATTTTTGCAATTCTGTATTCGAATAAACCCAAAATCGAAGACTACCGTAAACACTAATAGAGTGTTCTCCTTAACCTTCAACTTTGAGCCAATTTATCTCGGTTCTTTTGAAAAGATATCAAAAGTAGTCAACTGCTAAAATGTTGGTTCTTTCATGAATAACATTTTCTCGGTAGACTTCGTTTTGAAATCTTCAACAGGAACCGAATTAAAATGGCTCAAAGTTGACGGCTTTCTCGAGTGATAAACTAATTACTAACTCGGTTTATCCTTCATCTCCCAATTACTACAAATGTATGTCCCTGTTATATCTCCTAGTTTCATAGACATTTCACGTGTTAGTGGTTTTCTCCCCTTCGTTGAAATAAATAAATAAAGAATAAAGAATACGGTAATTTTCGAAACTGTTCCGTTGCCGTTCACAATTTTTTATTGAGTAGCTTCCTATTTGCAAGTAATACCCATTCCTTAAACTCCCTCTCATATAAAACACTCCGCTCTGCTCTGTTGGGAAACTGAAAAATTTGTGAGTGTAAAGTTCAAAGTACTGGGGCACAAATACCTCGGTCAGGGAAAACACAACCAAGAAGAAGGAAGCGAAGAAAAAATCGCCGGGTACATTTCGAGGGAATCCCCCTTATCTTCCCTCTACATGTAATCGAAAATTGACGTCAAAGTACTCAGAGAGAACTCGCCATGGTCGGACTGATGCAATATCATAAAAAGTTGGAGACAGTAATGGAAACGCCATTTTTGCATATGCAGAACTCGTGATTATTCGAAAAACGCCGGAGAGAGAGAACTTGATTTCAGACCAGCCAAGCCTCTTAACGCCAACACTATCGTACATGTATGGCATGAATTTTAACTATACAGACACAGAGAACTAGCAAGAATGAATGAGAACGTATTG</canonical>
            <polymorphic>GCCCCCAGCGGCAGCAGAGGACACGGAATAGAAATCAGGGGTTCAGGAAATAATATTAGCAGTTTGTCAGATGTTTTAAAAATTGACATTTTTGCAATTCTGTATTCGAATAAACCCAAAATCGAAGACTACCGTAAACACTAATAGAGTGTTCTCCTTAACCTTCAACTTTGAGCCAATTTATCTCGGTTCTTTTGAAAAGATATCAAAAGTAGTCAACTGCTAAAATGTTGGTTCTTTCATGAATAACATTTTCTCGGTAGACTTCGTTTTGAAATCTTCAACAGGAACCGAATTAAAATGGCTCAAAGTTGACGGCTTTCTCGAGTGATAAACTAATTACTAACTCGGTTTATCCTTCATCTCCCAATTACTACAAATGTATGTCCCTGTTATATCTCCTAGTTTCATAGACATTTCACGTGTTAGTGGTTTTCTCCCCTTCGTTGAAATAAATAAATAAAGAATAAAGAATACGGTAATTTTCGAAACTGTTCCGYTGCCGTTCACAATTTTTTATTGAGTAGCTTCCTATTTGCAAGTAATACCCATTCCTTAAACTCCCTCTCATATAAAACACTCCGCTCTGCTCTGTTGGGAAACTGAAAAATTTGTGAGTGTAAAGTTCAAAGTACTGGGGCACAAATACCTCGGTCAGGGAAAACACAACCAAGAAGAAGGAAGCGAAGAAAAAATCGCCGGGTACATTTCGAGGGAATCCCCCTTATCTTCCCTCTACATGTAATCGAAAATTGACGTCAAAGTACTCAGAGAGAACTCGCCATGGTCGGACTGATGCAATATCATAAAAAGTTGGAGACAGTAATGGAAACGCCATTTTTGCATATGCAGAACTCGTGATTATTCGAAAAACGCCGGAGAGAGAGAACTTGATTTCAGACCAGCCAAGCCTCTTAACGCCAACACTATCGTACATGTATGGCATGAATTTTAACTATACAGACACAGAGAACTAGCAAGAATGAATGAGAACGTATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCTGTTATATCTCCTAGTTTCA</pcr_primer_p1>
		<pcr_primer_p2>CCAGTACTTTGAACTTTACACTCA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCCTGTTATATCTCCTAGTTTCATAGACATTTCACGTGTTAGTGGTTTTCTCCCCTTCGTTGAAATAAATAAATAAAGAATAAAGAATACGGTAATTTTCGAAACTGTTCCGTTGCCGTTCACAATTTTTTATTGAGTAGCTTCCTATTTGCAAGTAATACCCATTCCTTAAACTCCCTCTCATATAAAACACTCCGCTCTGCTCTGTTGGGAAACTGAAAAATTTGTGAGTGTAAAGTTCAAAGTACTGG</canonical_amplicon>
		<polymorphic_amplicon>CCCTGTTATATCTCCTAGTTTCATAGACATTTCACGTGTTAGTGGTTTTCTCCCCTTCGTTGAAATAAATAAATAAAGAATAAAGAATACGGTAATTTTCGAAACTGTTCCGYTGCCGTTCACAATTTTTTATTGAGTAGCTTCCTATTTGCAAGTAATACCCATTCCTTAAACTCCCTCTCATATAAAACACTCCGCTCTGCTCTGTTGGGAAACTGAAAAATTTGTGAGTGTAAAGTTCAAAGTACTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36628</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>613189</contig_pos>
        <strand>+</strand>
        <context>TTGAGTAGCT[C/T]CCTATTTGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATTTTCGAAACTGTTCCGTTGCCGTTCACAATTTTTTATTGAGTAGCT</left_flank>
        <right_flank>CCTATTTGCAAGTAATACCCATTCCTTAAACTCCCTCTCATATAAAACAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATCAGGGGTTCAGGAAATAATATTAGCAGTTTGTCAGATGTTTTAAAAATTGACATTTTTGCAATTCTGTATTCGAATAAACCCAAAATCGAAGACTACCGTAAACACTAATAGAGTGTTCTCCTTAACCTTCAACTTTGAGCCAATTTATCTCGGTTCTTTTGAAAAGATATCAAAAGTAGTCAACTGCTAAAATGTTGGTTCTTTCATGAATAACATTTTCTCGGTAGACTTCGTTTTGAAATCTTCAACAGGAACCGAATTAAAATGGCTCAAAGTTGACGGCTTTCTCGAGTGATAAACTAATTACTAACTCGGTTTATCCTTCATCTCCCAATTACTACAAATGTATGTCCCTGTTATATCTCCTAGTTTCATAGACATTTCACGTGTTAGTGGTTTTCTCCCCTTCGTTGAAATAAATAAATAAAGAATAAAGAATACGGTAATTTTCGAAACTGTTCCGTTGCCGTTCACAATTTTTTATTGAGTAGCTTCCTATTTGCAAGTAATACCCATTCCTTAAACTCCCTCTCATATAAAACACTCCGCTCTGCTCTGTTGGGAAACTGAAAAATTTGTGAGTGTAAAGTTCAAAGTACTGGGGCACAAATACCTCGGTCAGGGAAAACACAACCAAGAAGAAGGAAGCGAAGAAAAAATCGCCGGGTACATTTCGAGGGAATCCCCCTTATCTTCCCTCTACATGTAATCGAAAATTGACGTCAAAGTACTCAGAGAGAACTCGCCATGGTCGGACTGATGCAATATCATAAAAAGTTGGAGACAGTAATGGAAACGCCATTTTTGCATATGCAGAACTCGTGATTATTCGAAAAACGCCGGAGAGAGAGAACTTGATTTCAGACCAGCCAAGCCTCTTAACGCCAACACTATCGTACATGTATGGCATGAATTTTAACTATACAGACACAGAGAACTAGCAAGAATGAATGAGAACGTATTGTTTTAAGTTGGCAGGAAAGGGCAGCGTAGG</canonical>
            <polymorphic>GAAATCAGGGGTTCAGGAAATAATATTAGCAGTTTGTCAGATGTTTTAAAAATTGACATTTTTGCAATTCTGTATTCGAATAAACCCAAAATCGAAGACTACCGTAAACACTAATAGAGTGTTCTCCTTAACCTTCAACTTTGAGCCAATTTATCTCGGTTCTTTTGAAAAGATATCAAAAGTAGTCAACTGCTAAAATGTTGGTTCTTTCATGAATAACATTTTCTCGGTAGACTTCGTTTTGAAATCTTCAACAGGAACCGAATTAAAATGGCTCAAAGTTGACGGCTTTCTCGAGTGATAAACTAATTACTAACTCGGTTTATCCTTCATCTCCCAATTACTACAAATGTATGTCCCTGTTATATCTCCTAGTTTCATAGACATTTCACGTGTTAGTGGTTTTCTCCCCTTCGTTGAAATAAATAAATAAAGAATAAAGAATACGGTAATTTTCGAAACTGTTCCGTTGCCGTTCACAATTTTTTATTGAGTAGCTYCCTATTTGCAAGTAATACCCATTCCTTAAACTCCCTCTCATATAAAACACTCCGCTCTGCTCTGTTGGGAAACTGAAAAATTTGTGAGTGTAAAGTTCAAAGTACTGGGGCACAAATACCTCGGTCAGGGAAAACACAACCAAGAAGAAGGAAGCGAAGAAAAAATCGCCGGGTACATTTCGAGGGAATCCCCCTTATCTTCCCTCTACATGTAATCGAAAATTGACGTCAAAGTACTCAGAGAGAACTCGCCATGGTCGGACTGATGCAATATCATAAAAAGTTGGAGACAGTAATGGAAACGCCATTTTTGCATATGCAGAACTCGTGATTATTCGAAAAACGCCGGAGAGAGAGAACTTGATTTCAGACCAGCCAAGCCTCTTAACGCCAACACTATCGTACATGTATGGCATGAATTTTAACTATACAGACACAGAGAACTAGCAAGAATGAATGAGAACGTATTGTTTTAAGTTGGCAGGAAAGGGCAGCGTAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCTGTTATATCTCCTAGTTTCA</pcr_primer_p1>
		<pcr_primer_p2>CCAGTACTTTGAACTTTACACTCA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCCTGTTATATCTCCTAGTTTCATAGACATTTCACGTGTTAGTGGTTTTCTCCCCTTCGTTGAAATAAATAAATAAAGAATAAAGAATACGGTAATTTTCGAAACTGTTCCGTTGCCGTTCACAATTTTTTATTGAGTAGCTTCCTATTTGCAAGTAATACCCATTCCTTAAACTCCCTCTCATATAAAACACTCCGCTCTGCTCTGTTGGGAAACTGAAAAATTTGTGAGTGTAAAGTTCAAAGTACTGG</canonical_amplicon>
		<polymorphic_amplicon>CCCTGTTATATCTCCTAGTTTCATAGACATTTCACGTGTTAGTGGTTTTCTCCCCTTCGTTGAAATAAATAAATAAAGAATAAAGAATACGGTAATTTTCGAAACTGTTCCGTTGCCGTTCACAATTTTTTATTGAGTAGCTYCCTATTTGCAAGTAATACCCATTCCTTAAACTCCCTCTCATATAAAACACTCCGCTCTGCTCTGTTGGGAAACTGAAAAATTTGTGAGTGTAAAGTTCAAAGTACTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36629</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>613228</contig_pos>
        <strand>+</strand>
        <context>AACTCCCTCT[C/T]ATATAAAACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGAGTAGCTTCCTATTTGCAAGTAATACCCATTCCTTAAACTCCCTCT</left_flank>
        <right_flank>ATATAAAACACTCCGCTCTGCTCTGTTGGGAAACTGAAAAATTTGTGAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGTTTTAAAAATTGACATTTTTGCAATTCTGTATTCGAATAAACCCAAAATCGAAGACTACCGTAAACACTAATAGAGTGTTCTCCTTAACCTTCAACTTTGAGCCAATTTATCTCGGTTCTTTTGAAAAGATATCAAAAGTAGTCAACTGCTAAAATGTTGGTTCTTTCATGAATAACATTTTCTCGGTAGACTTCGTTTTGAAATCTTCAACAGGAACCGAATTAAAATGGCTCAAAGTTGACGGCTTTCTCGAGTGATAAACTAATTACTAACTCGGTTTATCCTTCATCTCCCAATTACTACAAATGTATGTCCCTGTTATATCTCCTAGTTTCATAGACATTTCACGTGTTAGTGGTTTTCTCCCCTTCGTTGAAATAAATAAATAAAGAATAAAGAATACGGTAATTTTCGAAACTGTTCCGTTGCCGTTCACAATTTTTTATTGAGTAGCTTCCTATTTGCAAGTAATACCCATTCCTTAAACTCCCTCTCATATAAAACACTCCGCTCTGCTCTGTTGGGAAACTGAAAAATTTGTGAGTGTAAAGTTCAAAGTACTGGGGCACAAATACCTCGGTCAGGGAAAACACAACCAAGAAGAAGGAAGCGAAGAAAAAATCGCCGGGTACATTTCGAGGGAATCCCCCTTATCTTCCCTCTACATGTAATCGAAAATTGACGTCAAAGTACTCAGAGAGAACTCGCCATGGTCGGACTGATGCAATATCATAAAAAGTTGGAGACAGTAATGGAAACGCCATTTTTGCATATGCAGAACTCGTGATTATTCGAAAAACGCCGGAGAGAGAGAACTTGATTTCAGACCAGCCAAGCCTCTTAACGCCAACACTATCGTACATGTATGGCATGAATTTTAACTATACAGACACAGAGAACTAGCAAGAATGAATGAGAACGTATTGTTTTAAGTTGGCAGGAAAGGGCAGCGTAGGAAAAAAGGTTGAGGAATAAAGCACATGAAGTTGTGTTTT</canonical>
            <polymorphic>GATGTTTTAAAAATTGACATTTTTGCAATTCTGTATTCGAATAAACCCAAAATCGAAGACTACCGTAAACACTAATAGAGTGTTCTCCTTAACCTTCAACTTTGAGCCAATTTATCTCGGTTCTTTTGAAAAGATATCAAAAGTAGTCAACTGCTAAAATGTTGGTTCTTTCATGAATAACATTTTCTCGGTAGACTTCGTTTTGAAATCTTCAACAGGAACCGAATTAAAATGGCTCAAAGTTGACGGCTTTCTCGAGTGATAAACTAATTACTAACTCGGTTTATCCTTCATCTCCCAATTACTACAAATGTATGTCCCTGTTATATCTCCTAGTTTCATAGACATTTCACGTGTTAGTGGTTTTCTCCCCTTCGTTGAAATAAATAAATAAAGAATAAAGAATACGGTAATTTTCGAAACTGTTCCGTTGCCGTTCACAATTTTTTATTGAGTAGCTTCCTATTTGCAAGTAATACCCATTCCTTAAACTCCCTCTYATATAAAACACTCCGCTCTGCTCTGTTGGGAAACTGAAAAATTTGTGAGTGTAAAGTTCAAAGTACTGGGGCACAAATACCTCGGTCAGGGAAAACACAACCAAGAAGAAGGAAGCGAAGAAAAAATCGCCGGGTACATTTCGAGGGAATCCCCCTTATCTTCCCTCTACATGTAATCGAAAATTGACGTCAAAGTACTCAGAGAGAACTCGCCATGGTCGGACTGATGCAATATCATAAAAAGTTGGAGACAGTAATGGAAACGCCATTTTTGCATATGCAGAACTCGTGATTATTCGAAAAACGCCGGAGAGAGAGAACTTGATTTCAGACCAGCCAAGCCTCTTAACGCCAACACTATCGTACATGTATGGCATGAATTTTAACTATACAGACACAGAGAACTAGCAAGAATGAATGAGAACGTATTGTTTTAAGTTGGCAGGAAAGGGCAGCGTAGGAAAAAAGGTTGAGGAATAAAGCACATGAAGTTGTGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCTGTTATATCTCCTAGTTTCA</pcr_primer_p1>
		<pcr_primer_p2>CCAGTACTTTGAACTTTACACTCA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCCTGTTATATCTCCTAGTTTCATAGACATTTCACGTGTTAGTGGTTTTCTCCCCTTCGTTGAAATAAATAAATAAAGAATAAAGAATACGGTAATTTTCGAAACTGTTCCGTTGCCGTTCACAATTTTTTATTGAGTAGCTTCCTATTTGCAAGTAATACCCATTCCTTAAACTCCCTCTCATATAAAACACTCCGCTCTGCTCTGTTGGGAAACTGAAAAATTTGTGAGTGTAAAGTTCAAAGTACTGG</canonical_amplicon>
		<polymorphic_amplicon>CCCTGTTATATCTCCTAGTTTCATAGACATTTCACGTGTTAGTGGTTTTCTCCCCTTCGTTGAAATAAATAAATAAAGAATAAAGAATACGGTAATTTTCGAAACTGTTCCGTTGCCGTTCACAATTTTTTATTGAGTAGCTTCCTATTTGCAAGTAATACCCATTCCTTAAACTCCCTCTYATATAAAACACTCCGCTCTGCTCTGTTGGGAAACTGAAAAATTTGTGAGTGTAAAGTTCAAAGTACTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36630</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>613253</contig_pos>
        <strand>+</strand>
        <context>GCTCTGCTCT[C/G]TTGGGAAACT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATACCCATTCCTTAAACTCCCTCTCATATAAAACACTCCGCTCTGCTCT</left_flank>
        <right_flank>TTGGGAAACTGAAAAATTTGTGAGTGTAAAGTTCAAAGTACTGGGGCACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTCTGTATTCGAATAAACCCAAAATCGAAGACTACCGTAAACACTAATAGAGTGTTCTCCTTAACCTTCAACTTTGAGCCAATTTATCTCGGTTCTTTTGAAAAGATATCAAAAGTAGTCAACTGCTAAAATGTTGGTTCTTTCATGAATAACATTTTCTCGGTAGACTTCGTTTTGAAATCTTCAACAGGAACCGAATTAAAATGGCTCAAAGTTGACGGCTTTCTCGAGTGATAAACTAATTACTAACTCGGTTTATCCTTCATCTCCCAATTACTACAAATGTATGTCCCTGTTATATCTCCTAGTTTCATAGACATTTCACGTGTTAGTGGTTTTCTCCCCTTCGTTGAAATAAATAAATAAAGAATAAAGAATACGGTAATTTTCGAAACTGTTCCGTTGCCGTTCACAATTTTTTATTGAGTAGCTTCCTATTTGCAAGTAATACCCATTCCTTAAACTCCCTCTCATATAAAACACTCCGCTCTGCTCTGTTGGGAAACTGAAAAATTTGTGAGTGTAAAGTTCAAAGTACTGGGGCACAAATACCTCGGTCAGGGAAAACACAACCAAGAAGAAGGAAGCGAAGAAAAAATCGCCGGGTACATTTCGAGGGAATCCCCCTTATCTTCCCTCTACATGTAATCGAAAATTGACGTCAAAGTACTCAGAGAGAACTCGCCATGGTCGGACTGATGCAATATCATAAAAAGTTGGAGACAGTAATGGAAACGCCATTTTTGCATATGCAGAACTCGTGATTATTCGAAAAACGCCGGAGAGAGAGAACTTGATTTCAGACCAGCCAAGCCTCTTAACGCCAACACTATCGTACATGTATGGCATGAATTTTAACTATACAGACACAGAGAACTAGCAAGAATGAATGAGAACGTATTGTTTTAAGTTGGCAGGAAAGGGCAGCGTAGGAAAAAAGGTTGAGGAATAAAGCACATGAAGTTGTGTTTTGCTGCAAAATCAGGCATAAGTACCA</canonical>
            <polymorphic>CAATTCTGTATTCGAATAAACCCAAAATCGAAGACTACCGTAAACACTAATAGAGTGTTCTCCTTAACCTTCAACTTTGAGCCAATTTATCTCGGTTCTTTTGAAAAGATATCAAAAGTAGTCAACTGCTAAAATGTTGGTTCTTTCATGAATAACATTTTCTCGGTAGACTTCGTTTTGAAATCTTCAACAGGAACCGAATTAAAATGGCTCAAAGTTGACGGCTTTCTCGAGTGATAAACTAATTACTAACTCGGTTTATCCTTCATCTCCCAATTACTACAAATGTATGTCCCTGTTATATCTCCTAGTTTCATAGACATTTCACGTGTTAGTGGTTTTCTCCCCTTCGTTGAAATAAATAAATAAAGAATAAAGAATACGGTAATTTTCGAAACTGTTCCGTTGCCGTTCACAATTTTTTATTGAGTAGCTTCCTATTTGCAAGTAATACCCATTCCTTAAACTCCCTCTCATATAAAACACTCCGCTCTGCTCTSTTGGGAAACTGAAAAATTTGTGAGTGTAAAGTTCAAAGTACTGGGGCACAAATACCTCGGTCAGGGAAAACACAACCAAGAAGAAGGAAGCGAAGAAAAAATCGCCGGGTACATTTCGAGGGAATCCCCCTTATCTTCCCTCTACATGTAATCGAAAATTGACGTCAAAGTACTCAGAGAGAACTCGCCATGGTCGGACTGATGCAATATCATAAAAAGTTGGAGACAGTAATGGAAACGCCATTTTTGCATATGCAGAACTCGTGATTATTCGAAAAACGCCGGAGAGAGAGAACTTGATTTCAGACCAGCCAAGCCTCTTAACGCCAACACTATCGTACATGTATGGCATGAATTTTAACTATACAGACACAGAGAACTAGCAAGAATGAATGAGAACGTATTGTTTTAAGTTGGCAGGAAAGGGCAGCGTAGGAAAAAAGGTTGAGGAATAAAGCACATGAAGTTGTGTTTTGCTGCAAAATCAGGCATAAGTACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTTGCAAGTAATACCCATTC</pcr_primer_p1>
		<pcr_primer_p2>GCGAGTTCTCTCTGAGTACTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTATTTGCAAGTAATACCCATTCCTTAAACTCCCTCTCATATAAAACACTCCGCTCTGCTCTGTTGGGAAACTGAAAAATTTGTGAGTGTAAAGTTCAAAGTACTGGGGCACAAATACCTCGGTCAGGGAAAACACAACCAAGAAGAAGGAAGCGAAGAAAAAATCGCCGGGTACATTTCGAGGGAATCCCCCTTATCTTCCCTCTACATGTAATCGAAAATTGACGTCAAAGTACTCAGAGAGAACTCGC</canonical_amplicon>
		<polymorphic_amplicon>CTATTTGCAAGTAATACCCATTCCTTAAACTCCCTCTCATATAAAACACTCCGCTCTGCTCTSTTGGGAAACTGAAAAATTTGTGAGTGTAAAGTTCAAAGTACTGGGGCACAAATACCTCGGTCAGGGAAAACACAACCAAGAAGAAGGAAGCGAAGAAAAAATCGCCGGGTACATTTCGAGGGAATCCCCCTTATCTTCCCTCTACATGTAATCGAAAATTGACGTCAAAGTACTCAGAGAGAACTCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36631</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>644897</contig_pos>
        <strand>+</strand>
        <context>AAACTGAAAA[A/T]TTCTAAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATGGTGATTTTCGGTACTGAAACTGATGTAGCTCGGCTGAAACTGAAAA</left_flank>
        <right_flank>TTCTAAAAATTTCAGAAATGTCTAGATAGGCTATCCTTGACGTATCTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGTTTGATAAAAGCAAATGCACGTAGTGTTGCTCAATTAAATGTTTGTTTCAGAATCTATAAATCTCTTAACAAGGAAACCTCAACAACCCACAAACCCAGATTTTGATGAAAATTTCAGAATATGTCAGGATAGCTTATCTGGAAGTATCTGAAGTTAAGCCCGCCAGTTTCAGCCGAGTTATATCAGTTTCAGTAGCGAAAATTGCCGTTTCAGTGAATTTAATGAATTTTGATATTTCAAATAGTTTCTCAAGAACAAAAAATTTTTATTTTTTAATTTTTTCACGGTTTTCCAGATTTCTTCGAAAACTGAAAAATTAATATGCTGAGAAAAAATTTGAAATATCAAAATTTATCCAAATGTGAGTATAAAGCAACATTTTTCAGGTTCTTAAAGGTCCTAGGACTTGAGAAAATCGTCTTTGAAAATCGCTGTTTTGCACTGAAATGGTGATTTTCGGTACTGAAACTGATGTAGCTCGGCTGAAACTGAAAATTTCTAAAAATTTCAGAAATGTCTAGATAGGCTATCCTTGACGTATCTTGAAGTTTTAATCAAAATCTGGGTCTGTGAGGTGTTAAGGTTCCTTTGTCAAATGCAGAATGTCCTGTAGCACATGCTACTATCATGAATTATTTCACTTTCGAACACTTTCTGAATAGACCCACTTTCTCAATAGGCTAATTTGAATTAAGTGCTCTCAAATTTCATACTTTTTGAATAGTACAGTAGTCCTTTCTATTACTATCTGACTAGGAATTTTGAAACCTTGTTGTTATACCTCTCCAAAGAACCAGCTTAAGTACCACCCTGGACATAGCTCGTTTTTTTTGGCGGATCTTGAAACGCAACTTGAAATGTTATCAAATAAATAATCAGCAAGCCGATGCTCGTGCTACAGTAAACGAAGACTGATGATAAAAGGGGAGGAGTTTGGATGAGGTGATAGAAAAAAAGGGGAGGAGTTTGGATGAGGTGACCTTATGAGCAATTCTT</canonical>
            <polymorphic>CCGTTTGATAAAAGCAAATGCACGTAGTGTTGCTCAATTAAATGTTTGTTTCAGAATCTATAAATCTCTTAACAAGGAAACCTCAACAACCCACAAACCCAGATTTTGATGAAAATTTCAGAATATGTCAGGATAGCTTATCTGGAAGTATCTGAAGTTAAGCCCGCCAGTTTCAGCCGAGTTATATCAGTTTCAGTAGCGAAAATTGCCGTTTCAGTGAATTTAATGAATTTTGATATTTCAAATAGTTTCTCAAGAACAAAAAATTTTTATTTTTTAATTTTTTCACGGTTTTCCAGATTTCTTCGAAAACTGAAAAATTAATATGCTGAGAAAAAATTTGAAATATCAAAATTTATCCAAATGTGAGTATAAAGCAACATTTTTCAGGTTCTTAAAGGTCCTAGGACTTGAGAAAATCGTCTTTGAAAATCGCTGTTTTGCACTGAAATGGTGATTTTCGGTACTGAAACTGATGTAGCTCGGCTGAAACTGAAAAWTTCTAAAAATTTCAGAAATGTCTAGATAGGCTATCCTTGACGTATCTTGAAGTTTTAATCAAAATCTGGGTCTGTGAGGTGTTAAGGTTCCTTTGTCAAATGCAGAATGTCCTGTAGCACATGCTACTATCATGAATTATTTCACTTTCGAACACTTTCTGAATAGACCCACTTTCTCAATAGGCTAATTTGAATTAAGTGCTCTCAAATTTCATACTTTTTGAATAGTACAGTAGTCCTTTCTATTACTATCTGACTAGGAATTTTGAAACCTTGTTGTTATACCTCTCCAAAGAACCAGCTTAAGTACCACCCTGGACATAGCTCGTTTTTTTTGGCGGATCTTGAAACGCAACTTGAAATGTTATCAAATAAATAATCAGCAAGCCGATGCTCGTGCTACAGTAAACGAAGACTGATGATAAAAGGGGAGGAGTTTGGATGAGGTGATAGAAAAAAAGGGGAGGAGTTTGGATGAGGTGACCTTATGAGCAATTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>239 200 145 113 106 73 54 36 15 10 9</canonical_bands>
                <polymorphic_bands>239 200 155 113 106 73 54 36 15 9</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>232 145 127 90 78 54 52 40 36 35 19 16 15 15 14 10 9 7 6</canonical_bands>
                <polymorphic_bands>232 155 127 90 78 54 52 40 36 35 19 16 15 15 14 9 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAAAACTGAAAAATTAATATGC</pcr_primer_p1>
		<pcr_primer_p2>AACTTCAAGATACGTCAAGGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGAAAACTGAAAAATTAATATGCTGAGAAAAAATTTGAAATATCAAAATTTATCCAAATGTGAGTATAAAGCAACATTTTTCAGGTTCTTAAAGGTCCTAGGACTTGAGAAAATCGTCTTTGAAAATCGCTGTTTTGCACTGAAATGGTGATTTTCGGTACTGAAACTGATGTAGCTCGGCTGAAACTGAAAATTTCTAAAAATTTCAGAAATGTCTAGATAGGCTATCCTTGACGTATCTTGAAGTT</canonical_amplicon>
		<polymorphic_amplicon>CGAAAACTGAAAAATTAATATGCTGAGAAAAAATTTGAAATATCAAAATTTATCCAAATGTGAGTATAAAGCAACATTTTTCAGGTTCTTAAAGGTCCTAGGACTTGAGAAAATCGTCTTTGAAAATCGCTGTTTTGCACTGAAATGGTGATTTTCGGTACTGAAACTGATGTAGCTCGGCTGAAACTGAAAAWTTCTAAAAATTTCAGAAATGTCTAGATAGGCTATCCTTGACGTATCTTGAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36632</snp_id>
        <super_contig>c011200357.Contig2</super_contig>
        <contig_pos>645021</contig_pos>
        <strand>+</strand>
        <context>GTAGCACATG[A/C]TACTATCATG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTGAGGTGTTAAGGTTCCTTTGTCAAATGCAGAATGTCCTGTAGCACATG</left_flank>
        <right_flank>TACTATCATGAATTATTTCACTTTCGAACACTTTCTGAATAGACCCACTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTCAGGATAGCTTATCTGGAAGTATCTGAAGTTAAGCCCGCCAGTTTCAGCCGAGTTATATCAGTTTCAGTAGCGAAAATTGCCGTTTCAGTGAATTTAATGAATTTTGATATTTCAAATAGTTTCTCAAGAACAAAAAATTTTTATTTTTTAATTTTTTCACGGTTTTCCAGATTTCTTCGAAAACTGAAAAATTAATATGCTGAGAAAAAATTTGAAATATCAAAATTTATCCAAATGTGAGTATAAAGCAACATTTTTCAGGTTCTTAAAGGTCCTAGGACTTGAGAAAATCGTCTTTGAAAATCGCTGTTTTGCACTGAAATGGTGATTTTCGGTACTGAAACTGATGTAGCTCGGCTGAAACTGAAAATTTCTAAAAATTTCAGAAATGTCTAGATAGGCTATCCTTGACGTATCTTGAAGTTTTAATCAAAATCTGGGTCTGTGAGGTGTTAAGGTTCCTTTGTCAAATGCAGAATGTCCTGTAGCACATGCTACTATCATGAATTATTTCACTTTCGAACACTTTCTGAATAGACCCACTTTCTCAATAGGCTAATTTGAATTAAGTGCTCTCAAATTTCATACTTTTTGAATAGTACAGTAGTCCTTTCTATTACTATCTGACTAGGAATTTTGAAACCTTGTTGTTATACCTCTCCAAAGAACCAGCTTAAGTACCACCCTGGACATAGCTCGTTTTTTTTGGCGGATCTTGAAACGCAACTTGAAATGTTATCAAATAAATAATCAGCAAGCCGATGCTCGTGCTACAGTAAACGAAGACTGATGATAAAAGGGGAGGAGTTTGGATGAGGTGATAGAAAAAAAGGGGAGGAGTTTGGATGAGGTGACCTTATGAGCAATTCTTGTTTTATGAATCATGATATGTGAAAGCTAAGATGCGAGCCATCAGCAAATAGTGAGCAATTAAATTCAAATATCTACTCCAAATCATCAATTATGGGTGAGAAAAGTCAACAAGTTTGAATGCT</canonical>
            <polymorphic>ATGTCAGGATAGCTTATCTGGAAGTATCTGAAGTTAAGCCCGCCAGTTTCAGCCGAGTTATATCAGTTTCAGTAGCGAAAATTGCCGTTTCAGTGAATTTAATGAATTTTGATATTTCAAATAGTTTCTCAAGAACAAAAAATTTTTATTTTTTAATTTTTTCACGGTTTTCCAGATTTCTTCGAAAACTGAAAAATTAATATGCTGAGAAAAAATTTGAAATATCAAAATTTATCCAAATGTGAGTATAAAGCAACATTTTTCAGGTTCTTAAAGGTCCTAGGACTTGAGAAAATCGTCTTTGAAAATCGCTGTTTTGCACTGAAATGGTGATTTTCGGTACTGAAACTGATGTAGCTCGGCTGAAACTGAAAATTTCTAAAAATTTCAGAAATGTCTAGATAGGCTATCCTTGACGTATCTTGAAGTTTTAATCAAAATCTGGGTCTGTGAGGTGTTAAGGTTCCTTTGTCAAATGCAGAATGTCCTGTAGCACATGMTACTATCATGAATTATTTCACTTTCGAACACTTTCTGAATAGACCCACTTTCTCAATAGGCTAATTTGAATTAAGTGCTCTCAAATTTCATACTTTTTGAATAGTACAGTAGTCCTTTCTATTACTATCTGACTAGGAATTTTGAAACCTTGTTGTTATACCTCTCCAAAGAACCAGCTTAAGTACCACCCTGGACATAGCTCGTTTTTTTTGGCGGATCTTGAAACGCAACTTGAAATGTTATCAAATAAATAATCAGCAAGCCGATGCTCGTGCTACAGTAAACGAAGACTGATGATAAAAGGGGAGGAGTTTGGATGAGGTGATAGAAAAAAAGGGGAGGAGTTTGGATGAGGTGACCTTATGAGCAATTCTTGTTTTATGAATCATGATATGTGAAAGCTAAGATGCGAGCCATCAGCAAATAGTGAGCAATTAAATTCAAATATCTACTCCAAATCATCAATTATGGGTGAGAAAAGTCAACAAGTTTGAATGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAGGCTATCCTTGACGTATCTT</pcr_primer_p1>
		<pcr_primer_p2>AAGGTTTCAAAATTCCTAGTCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAGGCTATCCTTGACGTATCTTGAAGTTTTAATCAAAATCTGGGTCTGTGAGGTGTTAAGGTTCCTTTGTCAAATGCAGAATGTCCTGTAGCACATGCTACTATCATGAATTATTTCACTTTCGAACACTTTCTGAATAGACCCACTTTCTCAATAGGCTAATTTGAATTAAGTGCTCTCAAATTTCATACTTTTTGAATAGTACAGTAGTCCTTTCTATTACTATCTGACTAGGAATTTTGAAACCTT</canonical_amplicon>
		<polymorphic_amplicon>ATAGGCTATCCTTGACGTATCTTGAAGTTTTAATCAAAATCTGGGTCTGTGAGGTGTTAAGGTTCCTTTGTCAAATGCAGAATGTCCTGTAGCACATGMTACTATCATGAATTATTTCACTTTCGAACACTTTCTGAATAGACCCACTTTCTCAATAGGCTAATTTGAATTAAGTGCTCTCAAATTTCATACTTTTTGAATAGTACAGTAGTCCTTTCTATTACTATCTGACTAGGAATTTTGAAACCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36633</snp_id>
        <super_contig>c011201145.Contig3</super_contig>
        <contig_pos>22611</contig_pos>
        <strand></strand>
        <context>TGCCAGTTTC[T/C]GGCCTACTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTCTCTCGTGTGCTTTTCAATTGAGTATGATTATTTGTATGCCAGTTTC</left_flank>
        <right_flank>GGCCTACTCTGTGATTCTGACCTCGGCTGGAGGTCCATTTATTACATTTT</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGTAGTCATGTCATCCTATAAGACCCTAAAACTCAAACTACTCGCACAGTTCAAATACTAGTACATTATTCCAACATCTGCGCGTTTTTCGTATTTTGGACCTCTAATTTTTTTTCGGACCTCTAAACTTTTTTGGGACCTCTAATTTTTTTTCGGACCTCTAAACTTTTTTGGGACCTCTAATTTTTTTTCGGACCTCTAAACTTTTTTGGGACCTCTAATTTTTTTTTGGACCTCTATTTTATTTTGGGACCTCTAATTTTTTTTCGGACCTCTAAATTTTTTTGGGACCTCTAAACTAGAAAAGAGCCGAAATTTTCTTAGTGAAGATCGTTTCGGTTGGAATTTCTCATGATAATAGAAAACTTCTATAAAAACCCAAAAAATCCGTAACCACGAATTTCCAGGTGTCTGGGCTGCTGAAAACGAGACTGGAACATTTTTGGCGATTCTCTCGTGTGCTTTTCAATTGAGTATGATTATTTGTATGCCAGTTTCTGGCCTACTCTGTGATTCTGACCTCGGCTGGAGGTCCATTTATTACATTTTTGGAATTCTCACTCTTTTTTCCTATTTTCTATTCTTTTACTTCTATACAGATTCCCCCAGATTTCATAGAAATGTATCGGAAAAGGAATTGAAGAAAATTGAAAGCGGAAAATTAGAAATTTTAAAAGAAGGCGTTCCATATTTTGAAATTTGCACGGATTTAACGGTCCTCATGGCTTGGCTTTCTGTCCTTGGAGGCAATTTTGGATTCACAATTTTAACATTATATGGACCAACTTATTTGAAAAATGTACTTCATTTTGATGTCAAAGAGACTGGTTTTGCCACGGCGTTGCCTTTCATTCTAAGCGCTTTGGTGAAATTCGCAGCTGGGAGGATTTCGGATAAAATGGAGCATTTGTCGGAGAAGGTTGGTTGGGAATTCAGAAGTTCAGCAATTCGGAAAGTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCA</canonical>
            <polymorphic>GAGTAGTCATGTCATCCTATAAGACCCTAAAACTCAAACTACTCGCACAGTTCAAATACTAGTACATTATTCCAACATCTGCGCGTTTTTCGTATTTTGGACCTCTAATTTTTTTTCGGACCTCTAAACTTTTTTGGGACCTCTAATTTTTTTTCGGACCTCTAAACTTTTTTGGGACCTCTAATTTTTTTTCGGACCTCTAAACTTTTTTGGGACCTCTAATTTTTTTTTGGACCTCTATTTTATTTTGGGACCTCTAATTTTTTTTCGGACCTCTAAATTTTTTTGGGACCTCTAAACTAGAAAAGAGCCGAAATTTTCTTAGTGAAGATCGTTTCGGTTGGAATTTCTCATGATAATAGAAAACTTCTATAAAAACCCAAAAAATCCGTAACCACGAATTTCCAGGTGTCTGGGCTGCTGAAAACGAGACTGGAACATTTTTGGCGATTCTCTCGTGTGCTTTTCAATTGAGTATGATTATTTGTATGCCAGTTTCYGGCCTACTCTGTGATTCTGACCTCGGCTGGAGGTCCATTTATTACATTTTTGGAATTCTCACTCTTTTTTCCTATTTTCTATTCTTTTACTTCTATACAGATTCCCCCAGATTTCATAGAAATGTATCGGAAAAGGAATTGAAGAAAATTGAAAGCGGAAAATTAGAAATTTTAAAAGAAGGCGTTCCATATTTTGAAATTTGCACGGATTTAACGGTCCTCATGGCTTGGCTTTCTGTCCTTGGAGGCAATTTTGGATTCACAATTTTAACATTATATGGACCAACTTATTTGAAAAATGTACTTCATTTTGATGTCAAAGAGACTGGTTTTGCCACGGCGTTGCCTTTCATTCTAAGCGCTTTGGTGAAATTCGCAGCTGGGAGGATTTCGGATAAAATGGAGCATTTGTCGGAGAAGGTTGGTTGGGAATTCAGAAGTTCAGCAATTCGGAAAGTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNTGG</site>
                <isoschizomers>
                    <enzyme>AccB7I</enzyme>
                    <enzyme>PflBI</enzyme>
                    <enzyme>PflMI</enzyme>
                    <enzyme>Van91I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGNNNCTG</site>
                <isoschizomers>
                    <enzyme>AlwNI</enzyme>
                    <enzyme>CaiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTTCTTAGTGAAGATCGTTTC</pcr_primer_p1>
		<pcr_primer_p2>GAGTGAGAATTCCAAAAATGTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTTTCTTAGTGAAGATCGTTTCGGTTGGAATTTCTCATGATAATAGAAAACTTCTATAAAAACCCAAAAAATCCGTAACCACGAATTTCCAGGTGTCTGGGCTGCTGAAAACGAGACTGGAACATTTTTGGCGATTCTCTCGTGTGCTTTTCAATTGAGTATGATTATTTGTATGCCAGTTTCTGGCCTACTCTGTGATTCTGACCTCGGCTGGAGGTCCATTTATTACATTTTTGGAATTCTCACTC</canonical_amplicon>
		<polymorphic_amplicon>AATTTTCTTAGTGAAGATCGTTTCGGTTGGAATTTCTCATGATAATAGAAAACTTCTATAAAAACCCAAAAAATCCGTAACCACGAATTTCCAGGTGTCTGGGCTGCTGAAAACGAGACTGGAACATTTTTGGCGATTCTCTCGTGTGCTTTTCAATTGAGTATGATTATTTGTATGCCAGTTTCYGGCCTACTCTGTGATTCTGACCTCGGCTGGAGGTCCATTTATTACATTTTTGGAATTCTCACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36634</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>25382</contig_pos>
        <strand></strand>
        <context>TGGAAAAAAA[T/A]KGAAAAAATC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GTATACGGTAGGTATCATTTAAAGGGACAGAGAGAAAATCTGGAAAAAAA</left_flank>
        <right_flank>GGAAAAAATCAGCTGAAAATGAGCTCAAAAATGTGAATTTTTGAATTTGG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTCGGCCACGGTCGGTCTACTGTAGCTTTTTCGGTTACTGTAGATACTGTAGCCCTGCTTCCGACAACCTTACAGTAATCGAGCTCATCCAAAAGATTAGTTTTTGGATTGTTGTAGTTATTTTGGGTTACTGTAATTTTTGGGTTACTGTAGCCTTATCGAATTACTGTAATTTTTTTTTAGATTACTGTGGTTTATTGGATTACTGTACATATCTTAGCTTCAGTATTACTGTAGATACTGTAATCTTGCTTTCTGCAGCCTTACAGTAATCCTATGACTCTTGAAAATCAATTTTTTCAAAATTATCAATGGAGCGCACTTTGCAGGAATACTCTCCATCGTGCTACAAATCGTGCCTCTCCCTGCAACGTGATCAGCTGCTCACATCGACTTCAGATGGAAAAGTCAAACTTTATGATGCCAAAAATTTCAACGTACTGCAGACGTATACGGTAGGTATCATTTAAAGGGACAGAGAGAAAATCTGGAAAAAAATGGAAAAAATCAGCTGAAAATGAGCTCAAAAATGTGAATTTTTGAATTTGGCGCCAAAATTTTTTTTCAAAAAAAATTTTGAATTTTGAATTTGGCGCCAAAATTTTTTTCTTGTTTCAAGTTTTAAAAAATTTCTTTCAGGTCGGCTCCTACACCCGCCAAGTACAACTGGACCATGGAGCGCACTTGGTGATGGCGCGAAGCGCGCGGACGAGATATAAATTTAGTGTAAGGGGATTACTGTAGATTTTGGATTACTGTGGTTTTCAGGATTACTGTAGCTACTTCTATTACTGTAACTTTTTTTTTGGGTTACTGTAGCTTCGAAAACCCAAAATTTCAAAATTTCGAAAAAATATATATTACTGTAACTGTTTTTGGGTTACTGTAGATGCTCTATTTTCCAGGGTTTTTGGATTACTGTAGCTCCAAAACGCCCGAAATTTTGGGTCACTGTAGATTCTGGATTACTGTAGTTTTCAGGATTATTTTAGCTACTTG</canonical>
            <polymorphic>GGTCGGCCACGGTCGGTCTACTGTAGCTTTTTCGGTTACTGTAGATACTGTAGCCCTGCTTCCGACAACCTTACAGTAATCGAGCTCATCCAAAAGATTAGTTTTTGGATTGTTGTAGTTATTTTGGGTTACTGTAATTTTTGGGTTACTGTAGCCTTATCGAATTACTGTAATTTTTTTTTAGATTACTGTGGTTTATTGGATTACTGTACATATCTTAGCTTCAGTATTACTGTAGATACTGTAATCTTGCTTTCTGCAGCCTTACAGTAATCCTATGACTCTTGAAAATCAATTTTTTCAAAATTATCAATGGAGCGCACTTTGCAGGAATACTCTCCATCGTGCTACAAATCGTGCCTCTCCCTGCAACGTGATCAGCTGCTCACATCGACTTCAGATGGAAAAGTCAAACTTTATGATGCCAAAAATTTCAACGTACTGCAGACGTATACGGTAGGTATCATTTAAAGGGACAGAGAGAAAATCTGGAAAAAAAWGGAAAAAATCAGCTGAAAATGAGCTCAAAAATGTGAATTTTTGAATTTGGCGCCAAAATTTTTTTTCAAAAAAAATTTTGAATTTTGAATTTGGCGCCAAAATTTTTTTCTTGTTTCAAGTTTTAAAAAATTTCTTTCAGGTCGGCTCCTACACCCGCCAAGTACAACTGGACCATGGAGCGCACTTGGTGATGGCGCGAAGCGCGCGGACGAGATATAAATTTAGTGTAAGGGGATTACTGTAGATTTTGGATTACTGTGGTTTTCAGGATTACTGTAGCTACTTCTATTACTGTAACTTTTTTTTTGGGTTACTGTAGCTTCGAAAACCCAAAATTTCAAAATTTCGAAAAAATATATATTACTGTAACTGTTTTTGGGTTACTGTAGATGCTCTATTTTCCAGGGTTTTTGGATTACTGTAGCTCCAAAACGCCCGAAATTTTGGGTCACTGTAGATTCTGGATTACTGTAGTTTTCAGGATTATTTTAGCTACTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGACGTATACGGTAGGTATCAT</pcr_primer_p1>
		<pcr_primer_p2>TCCATGGTCCAGTTGTACTT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>CAGACGTATACGGTAGGTATCATTTAAAGGGACAGAGAGAAAATCTGGAAAAAAATGGAAAAAATCAGCTGAAAATGAGCTCAAAAATGTGAATTTTTGAATTTGGCGCCAAAATTTTTTTTCAAAAAAAATTTTGAATTTTGAATTTGGCGCCAAAATTTTTTTCTTGTTTCAAGTTTTAAAAAATTTCTTTCAGGTCGGCTCCTACACCCGCCAAGTACAACTGGACCATGGA</canonical_amplicon>
		<polymorphic_amplicon>CAGACGTATACGGTAGGTATCATTTAAAGGGACAGAGAGAAAATCTGGAAAAAAAWGGAAAAAATCAGCTGAAAATGAGCTCAAAAATGTGAATTTTTGAATTTGGCGCCAAAATTTTTTTTCAAAAAAAATTTTGAATTTTGAATTTGGCGCCAAAATTTTTTTCTTGTTTCAAGTTTTAAAAAATTTCTTTCAGGTCGGCTCCTACACCCGCCAAGTACAACTGGACCATGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36635</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>25383</contig_pos>
        <strand></strand>
        <context>GGAAAAAAAW[G/T]GAAAAAATCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATACGGTAGGTATCATTTAAAGGGACAGAGAGAAAATCTGGAAAAAAAT</left_flank>
        <right_flank>GAAAAAATCAGCTGAAAATGAGCTCAAAAATGTGAATTTTTGAATTTGGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCGGCCACGGTCGGTCTACTGTAGCTTTTTCGGTTACTGTAGATACTGTAGCCCTGCTTCCGACAACCTTACAGTAATCGAGCTCATCCAAAAGATTAGTTTTTGGATTGTTGTAGTTATTTTGGGTTACTGTAATTTTTGGGTTACTGTAGCCTTATCGAATTACTGTAATTTTTTTTTAGATTACTGTGGTTTATTGGATTACTGTACATATCTTAGCTTCAGTATTACTGTAGATACTGTAATCTTGCTTTCTGCAGCCTTACAGTAATCCTATGACTCTTGAAAATCAATTTTTTCAAAATTATCAATGGAGCGCACTTTGCAGGAATACTCTCCATCGTGCTACAAATCGTGCCTCTCCCTGCAACGTGATCAGCTGCTCACATCGACTTCAGATGGAAAAGTCAAACTTTATGATGCCAAAAATTTCAACGTACTGCAGACGTATACGGTAGGTATCATTTAAAGGGACAGAGAGAAAATCTGGAAAAAAATGGAAAAAATCAGCTGAAAATGAGCTCAAAAATGTGAATTTTTGAATTTGGCGCCAAAATTTTTTTTCAAAAAAAATTTTGAATTTTGAATTTGGCGCCAAAATTTTTTTCTTGTTTCAAGTTTTAAAAAATTTCTTTCAGGTCGGCTCCTACACCCGCCAAGTACAACTGGACCATGGAGCGCACTTGGTGATGGCGCGAAGCGCGCGGACGAGATATAAATTTAGTGTAAGGGGATTACTGTAGATTTTGGATTACTGTGGTTTTCAGGATTACTGTAGCTACTTCTATTACTGTAACTTTTTTTTTGGGTTACTGTAGCTTCGAAAACCCAAAATTTCAAAATTTCGAAAAAATATATATTACTGTAACTGTTTTTGGGTTACTGTAGATGCTCTATTTTCCAGGGTTTTTGGATTACTGTAGCTCCAAAACGCCCGAAATTTTGGGTCACTGTAGATTCTGGATTACTGTAGTTTTCAGGATTATTTTAGCTACTTGG</canonical>
            <polymorphic>GTCGGCCACGGTCGGTCTACTGTAGCTTTTTCGGTTACTGTAGATACTGTAGCCCTGCTTCCGACAACCTTACAGTAATCGAGCTCATCCAAAAGATTAGTTTTTGGATTGTTGTAGTTATTTTGGGTTACTGTAATTTTTGGGTTACTGTAGCCTTATCGAATTACTGTAATTTTTTTTTAGATTACTGTGGTTTATTGGATTACTGTACATATCTTAGCTTCAGTATTACTGTAGATACTGTAATCTTGCTTTCTGCAGCCTTACAGTAATCCTATGACTCTTGAAAATCAATTTTTTCAAAATTATCAATGGAGCGCACTTTGCAGGAATACTCTCCATCGTGCTACAAATCGTGCCTCTCCCTGCAACGTGATCAGCTGCTCACATCGACTTCAGATGGAAAAGTCAAACTTTATGATGCCAAAAATTTCAACGTACTGCAGACGTATACGGTAGGTATCATTTAAAGGGACAGAGAGAAAATCTGGAAAAAAATKGAAAAAATCAGCTGAAAATGAGCTCAAAAATGTGAATTTTTGAATTTGGCGCCAAAATTTTTTTTCAAAAAAAATTTTGAATTTTGAATTTGGCGCCAAAATTTTTTTCTTGTTTCAAGTTTTAAAAAATTTCTTTCAGGTCGGCTCCTACACCCGCCAAGTACAACTGGACCATGGAGCGCACTTGGTGATGGCGCGAAGCGCGCGGACGAGATATAAATTTAGTGTAAGGGGATTACTGTAGATTTTGGATTACTGTGGTTTTCAGGATTACTGTAGCTACTTCTATTACTGTAACTTTTTTTTTGGGTTACTGTAGCTTCGAAAACCCAAAATTTCAAAATTTCGAAAAAATATATATTACTGTAACTGTTTTTGGGTTACTGTAGATGCTCTATTTTCCAGGGTTTTTGGATTACTGTAGCTCCAAAACGCCCGAAATTTTGGGTCACTGTAGATTCTGGATTACTGTAGTTTTCAGGATTATTTTAGCTACTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGACGTATACGGTAGGTATCAT</pcr_primer_p1>
		<pcr_primer_p2>TCCATGGTCCAGTTGTACTT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>CAGACGTATACGGTAGGTATCATTTAAAGGGACAGAGAGAAAATCTGGAAAAAAATGGAAAAAATCAGCTGAAAATGAGCTCAAAAATGTGAATTTTTGAATTTGGCGCCAAAATTTTTTTTCAAAAAAAATTTTGAATTTTGAATTTGGCGCCAAAATTTTTTTCTTGTTTCAAGTTTTAAAAAATTTCTTTCAGGTCGGCTCCTACACCCGCCAAGTACAACTGGACCATGGA</canonical_amplicon>
		<polymorphic_amplicon>CAGACGTATACGGTAGGTATCATTTAAAGGGACAGAGAGAAAATCTGGAAAAAAATKGAAAAAATCAGCTGAAAATGAGCTCAAAAATGTGAATTTTTGAATTTGGCGCCAAAATTTTTTTTCAAAAAAAATTTTGAATTTTGAATTTGGCGCCAAAATTTTTTTCTTGTTTCAAGTTTTAAAAAATTTCTTTCAGGTCGGCTCCTACACCCGCCAAGTACAACTGGACCATGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36636</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>68110</contig_pos>
        <strand></strand>
        <context>cattttgtcg[T/C]gagatatggt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCG</left_flank>
        <right_flank>GAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGGCAGTTTCCGAACGATGGCTGGACGGTATCAAATACCGTGTCGGCGACTGCGTACAGTATCGCGGCGAAGCGTGTCGTCAGTATTTGTCCAACAAATTTGTAATGATGACGAACGAGTCGCGCGAGGAGATGTACGATATCGATCGGAATTTGAGAGCCGCCATGCTTTTTATCAATGGAGCGCCGACGATATCGCAAAAGTGTCGACAGTTGTCACAGGCGGTCGCGTGCCATCATATGTATAAAGTTTGCGAGTCGGAGAGTAACAATCAAATTGTCGCGATTTGCAAACACGATTGTGATGTCATTCAGGTTAGATTTTGAGCCGATTTTAAGCAAAAATTTGAATTTTCGTGCATTTCGTCGTGGGATATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGTGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAAGCCTAGGGTTACTGTAGGCTTGTGCAC</canonical>
            <polymorphic>AATGGCAGTTTCCGAACGATGGCTGGACGGTATCAAATACCGTGTCGGCGACTGCGTACAGTATCGCGGCGAAGCGTGTCGTCAGTATTTGTCCAACAAATTTGTAATGATGACGAACGAGTCGCGCGAGGAGATGTACGATATCGATCGGAATTTGAGAGCCGCCATGCTTTTTATCAATGGAGCGCCGACGATATCGCAAAAGTGTCGACAGTTGTCACAGGCGGTCGCGTGCCATCATATGTATAAAGTTTGCGAGTCGGAGAGTAACAATCAAATTGTCGCGATTTGCAAACACGATTGTGATGTCATTCAGGTTAGATTTTGAGCCGATTTTAAGCAAAAATTTGAATTTTCGTGCATTTCGTCGTGGGATATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGYGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAAGCCTAGGGTTACTGTAGGCTTGTGCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>129 97 80 76 67 63 55 49 44 38 36 34 22 22 22 14 13 13 12 12 12 12 12 10 10 10 8 8 7 5 3 2 2 1</canonical_bands>
                <polymorphic_bands>129 97 80 76 67 63 55 49 44 38 36 34 22 22 22 22 14 13 13 12 12 12 12 10 10 8 8 7 5 3 2 2 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGATTTTGAGCCGATTTTAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCAATACTAATTGCTTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>655</pcr_amplicon_size>
		<canonical_amplicon>TAGATTTTGAGCCGATTTTAAGCAAAAATTTGAATTTTCGTGCATTTCGTCGTGGGATATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGTGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TAGATTTTGAGCCGATTTTAAGCAAAAATTTGAATTTTCGTGCATTTCGTCGTGGGATATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGYGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36637</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>68176</contig_pos>
        <strand></strand>
        <context>tagtgaaaat[G/C]cggcgctaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>ATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAAT</left_flank>
        <right_flank>CGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGCGAAGCGTGTCGTCAGTATTTGTCCAACAAATTTGTAATGATGACGAACGAGTCGCGCGAGGAGATGTACGATATCGATCGGAATTTGAGAGCCGCCATGCTTTTTATCAATGGAGCGCCGACGATATCGCAAAAGTGTCGACAGTTGTCACAGGCGGTCGCGTGCCATCATATGTATAAAGTTTGCGAGTCGGAGAGTAACAATCAAATTGTCGCGATTTGCAAACACGATTGTGATGTCATTCAGGTTAGATTTTGAGCCGATTTTAAGCAAAAATTTGAATTTTCGTGCATTTCGTCGTGGGATATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGTGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAAGCCTAGGGTTACTGTAGGCTTGTGCACACCAGATATGACGACAAGATGCACAGAAGTGACAATTTCGCTCTCCAAAACACCAAACATGACGAC</canonical>
            <polymorphic>CGGCGAAGCGTGTCGTCAGTATTTGTCCAACAAATTTGTAATGATGACGAACGAGTCGCGCGAGGAGATGTACGATATCGATCGGAATTTGAGAGCCGCCATGCTTTTTATCAATGGAGCGCCGACGATATCGCAAAAGTGTCGACAGTTGTCACAGGCGGTCGCGTGCCATCATATGTATAAAGTTTGCGAGTCGGAGAGTAACAATCAAATTGTCGCGATTTGCAAACACGATTGTGATGTCATTCAGGTTAGATTTTGAGCCGATTTTAAGCAAAAATTTGAATTTTCGTGCATTTCGTCGTGGGATATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGTGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATSCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAAGCCTAGGGTTACTGTAGGCTTGTGCACACCAGATATGACGACAAGATGCACAGAAGTGACAATTTCGCTCTCCAAAACACCAAACATGACGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>405 290 207 98</canonical_bands>
                <polymorphic_bands>695 207 98</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>405 290 207 98</canonical_bands>
                <polymorphic_bands>695 207 98</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGATTTTGAGCCGATTTTAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCAATACTAATTGCTTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>655</pcr_amplicon_size>
		<canonical_amplicon>TAGATTTTGAGCCGATTTTAAGCAAAAATTTGAATTTTCGTGCATTTCGTCGTGGGATATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGTGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TAGATTTTGAGCCGATTTTAAGCAAAAATTTGAATTTTCGTGCATTTCGTCGTGGGATATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGTGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATSCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36638</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>68188</contig_pos>
        <strand></strand>
        <context>ggcgctaaaa[T/A]tggttaaaag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAA</left_flank>
        <right_flank>TGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTCTGTGCATTTCTT</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGTCAGTATTTGTCCAACAAATTTGTAATGATGACGAACGAGTCGCGCGAGGAGATGTACGATATCGATCGGAATTTGAGAGCCGCCATGCTTTTTATCAATGGAGCGCCGACGATATCGCAAAAGTGTCGACAGTTGTCACAGGCGGTCGCGTGCCATCATATGTATAAAGTTTGCGAGTCGGAGAGTAACAATCAAATTGTCGCGATTTGCAAACACGATTGTGATGTCATTCAGGTTAGATTTTGAGCCGATTTTAAGCAAAAATTTGAATTTTCGTGCATTTCGTCGTGGGATATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGTGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAAGCCTAGGGTTACTGTAGGCTTGTGCACACCAGATATGACGACAAGATGCACAGAAGTGACAATTTCGCTCTCCAAAACACCAAACATGACGACTAAATGCACGAA</canonical>
            <polymorphic>TCGTCAGTATTTGTCCAACAAATTTGTAATGATGACGAACGAGTCGCGCGAGGAGATGTACGATATCGATCGGAATTTGAGAGCCGCCATGCTTTTTATCAATGGAGCGCCGACGATATCGCAAAAGTGTCGACAGTTGTCACAGGCGGTCGCGTGCCATCATATGTATAAAGTTTGCGAGTCGGAGAGTAACAATCAAATTGTCGCGATTTGCAAACACGATTGTGATGTCATTCAGGTTAGATTTTGAGCCGATTTTAAGCAAAAATTTGAATTTTCGTGCATTTCGTCGTGGGATATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGTGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAAWTGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAAGCCTAGGGTTACTGTAGGCTTGTGCACACCAGATATGACGACAAGATGCACAGAAGTGACAATTTCGCTCTCCAAAACACCAAACATGACGACTAAATGCACGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>125 101 76 75 68 53 51 51 49 45 43 33 32 29 29 29 23 22 20 20 8 6 6 6</canonical_bands>
                <polymorphic_bands>125 101 76 75 68 53 52 51 51 49 45 43 33 32 29 29 22 20 20 8 6 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGATTTTGAGCCGATTTTAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCAATACTAATTGCTTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>655</pcr_amplicon_size>
		<canonical_amplicon>TAGATTTTGAGCCGATTTTAAGCAAAAATTTGAATTTTCGTGCATTTCGTCGTGGGATATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGTGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TAGATTTTGAGCCGATTTTAAGCAAAAATTTGAATTTTCGTGCATTTCGTCGTGGGATATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGTGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAAWTGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36639</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>68220</contig_pos>
        <strand></strand>
        <context>tcaaaaattt[G/A]ratttctgtg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAAAATGCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTT</left_flank>
        <right_flank>GATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTTTTGTTGAAATTGGC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACGAACGAGTCGCGCGAGGAGATGTACGATATCGATCGGAATTTGAGAGCCGCCATGCTTTTTATCAATGGAGCGCCGACGATATCGCAAAAGTGTCGACAGTTGTCACAGGCGGTCGCGTGCCATCATATGTATAAAGTTTGCGAGTCGGAGAGTAACAATCAAATTGTCGCGATTTGCAAACACGATTGTGATGTCATTCAGGTTAGATTTTGAGCCGATTTTAAGCAAAAATTTGAATTTTCGTGCATTTCGTCGTGGGATATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGTGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAAGCCTAGGGTTACTGTAGGCTTGTGCACACCAGATATGACGACAAGATGCACAGAAGTGACAATTTCGCTCTCCAAAACACCAAACATGACGACTAAATGCACGAAAATCGAAATTTTTCAAAAAAAAGAGACATTGC</canonical>
            <polymorphic>TGACGAACGAGTCGCGCGAGGAGATGTACGATATCGATCGGAATTTGAGAGCCGCCATGCTTTTTATCAATGGAGCGCCGACGATATCGCAAAAGTGTCGACAGTTGTCACAGGCGGTCGCGTGCCATCATATGTATAAAGTTTGCGAGTCGGAGAGTAACAATCAAATTGTCGCGATTTGCAAACACGATTGTGATGTCATTCAGGTTAGATTTTGAGCCGATTTTAAGCAAAAATTTGAATTTTCGTGCATTTCGTCGTGGGATATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGTGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTRGATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAAGCCTAGGGTTACTGTAGGCTTGTGCACACCAGATATGACGACAAGATGCACAGAAGTGACAATTTCGCTCTCCAAAACACCAAACATGACGACTAAATGCACGAAAATCGAAATTTTTCAAAAAAAAGAGACATTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGATTTTGAGCCGATTTTAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCAATACTAATTGCTTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>655</pcr_amplicon_size>
		<canonical_amplicon>TAGATTTTGAGCCGATTTTAAGCAAAAATTTGAATTTTCGTGCATTTCGTCGTGGGATATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGTGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TAGATTTTGAGCCGATTTTAAGCAAAAATTTGAATTTTCGTGCATTTCGTCGTGGGATATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGTGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTRGATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36640</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>68221</contig_pos>
        <strand></strand>
        <context>caaaaatttr[G/A]atttctgtgc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAATGCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTG</left_flank>
        <right_flank>ATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGAACGAGTCGCGCGAGGAGATGTACGATATCGATCGGAATTTGAGAGCCGCCATGCTTTTTATCAATGGAGCGCCGACGATATCGCAAAAGTGTCGACAGTTGTCACAGGCGGTCGCGTGCCATCATATGTATAAAGTTTGCGAGTCGGAGAGTAACAATCAAATTGTCGCGATTTGCAAACACGATTGTGATGTCATTCAGGTTAGATTTTGAGCCGATTTTAAGCAAAAATTTGAATTTTCGTGCATTTCGTCGTGGGATATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGTGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAAGCCTAGGGTTACTGTAGGCTTGTGCACACCAGATATGACGACAAGATGCACAGAAGTGACAATTTCGCTCTCCAAAACACCAAACATGACGACTAAATGCACGAAAATCGAAATTTTTCAAAAAAAAGAGACATTGCA</canonical>
            <polymorphic>GACGAACGAGTCGCGCGAGGAGATGTACGATATCGATCGGAATTTGAGAGCCGCCATGCTTTTTATCAATGGAGCGCCGACGATATCGCAAAAGTGTCGACAGTTGTCACAGGCGGTCGCGTGCCATCATATGTATAAAGTTTGCGAGTCGGAGAGTAACAATCAAATTGTCGCGATTTGCAAACACGATTGTGATGTCATTCAGGTTAGATTTTGAGCCGATTTTAAGCAAAAATTTGAATTTTCGTGCATTTCGTCGTGGGATATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGTGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTGRATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAAGCCTAGGGTTACTGTAGGCTTGTGCACACCAGATATGACGACAAGATGCACAGAAGTGACAATTTCGCTCTCCAAAACACCAAACATGACGACTAAATGCACGAAAATCGAAATTTTTCAAAAAAAAGAGACATTGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGATTTTGAGCCGATTTTAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCAATACTAATTGCTTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>655</pcr_amplicon_size>
		<canonical_amplicon>TAGATTTTGAGCCGATTTTAAGCAAAAATTTGAATTTTCGTGCATTTCGTCGTGGGATATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGTGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TAGATTTTGAGCCGATTTTAAGCAAAAATTTGAATTTTCGTGCATTTCGTCGTGGGATATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGTGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTGRATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36641</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>68237</contig_pos>
        <strand></strand>
        <context>tgtgcatttc[T/G]tcgtgggata</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATTGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTCTGTGCATTTC</left_flank>
        <right_flank>TCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGAGATGTACGATATCGATCGGAATTTGAGAGCCGCCATGCTTTTTATCAATGGAGCGCCGACGATATCGCAAAAGTGTCGACAGTTGTCACAGGCGGTCGCGTGCCATCATATGTATAAAGTTTGCGAGTCGGAGAGTAACAATCAAATTGTCGCGATTTGCAAACACGATTGTGATGTCATTCAGGTTAGATTTTGAGCCGATTTTAAGCAAAAATTTGAATTTTCGTGCATTTCGTCGTGGGATATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGTGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAAGCCTAGGGTTACTGTAGGCTTGTGCACACCAGATATGACGACAAGATGCACAGAAGTGACAATTTCGCTCTCCAAAACACCAAACATGACGACTAAATGCACGAAAATCGAAATTTTTCAAAAAAAAGAGACATTGCAGACTCATAAAAGTATT</canonical>
            <polymorphic>GAGGAGATGTACGATATCGATCGGAATTTGAGAGCCGCCATGCTTTTTATCAATGGAGCGCCGACGATATCGCAAAAGTGTCGACAGTTGTCACAGGCGGTCGCGTGCCATCATATGTATAAAGTTTGCGAGTCGGAGAGTAACAATCAAATTGTCGCGATTTGCAAACACGATTGTGATGTCATTCAGGTTAGATTTTGAGCCGATTTTAAGCAAAAATTTGAATTTTCGTGCATTTCGTCGTGGGATATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGTGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTCTGTGCATTTCKTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAAGCCTAGGGTTACTGTAGGCTTGTGCACACCAGATATGACGACAAGATGCACAGAAGTGACAATTTCGCTCTCCAAAACACCAAACATGACGACTAAATGCACGAAAATCGAAATTTTTCAAAAAAAAGAGACATTGCAGACTCATAAAAGTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGATTTTGAGCCGATTTTAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCAATACTAATTGCTTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>655</pcr_amplicon_size>
		<canonical_amplicon>TAGATTTTGAGCCGATTTTAAGCAAAAATTTGAATTTTCGTGCATTTCGTCGTGGGATATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGTGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TAGATTTTGAGCCGATTTTAAGCAAAAATTTGAATTTTCGTGCATTTCGTCGTGGGATATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGTGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTCTGTGCATTTCKTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36642</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>68256</contig_pos>
        <strand></strand>
        <context>tatggtgttt[T/C]ttgttgaaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCACTCAAAAATTTGGATTTCTGTGCATTTCTTCGTGGGATATGGTGTTT</left_flank>
        <right_flank>TTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAAT</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGGAATTTGAGAGCCGCCATGCTTTTTATCAATGGAGCGCCGACGATATCGCAAAAGTGTCGACAGTTGTCACAGGCGGTCGCGTGCCATCATATGTATAAAGTTTGCGAGTCGGAGAGTAACAATCAAATTGTCGCGATTTGCAAACACGATTGTGATGTCATTCAGGTTAGATTTTGAGCCGATTTTAAGCAAAAATTTGAATTTTCGTGCATTTCGTCGTGGGATATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGTGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAAGCCTAGGGTTACTGTAGGCTTGTGCACACCAGATATGACGACAAGATGCACAGAAGTGACAATTTCGCTCTCCAAAACACCAAACATGACGACTAAATGCACGAAAATCGAAATTTTTCAAAAAAAAGAGACATTGCAGACTCATAAAAGTATTATTTGATCTACTCCTAAAC</canonical>
            <polymorphic>ATCGGAATTTGAGAGCCGCCATGCTTTTTATCAATGGAGCGCCGACGATATCGCAAAAGTGTCGACAGTTGTCACAGGCGGTCGCGTGCCATCATATGTATAAAGTTTGCGAGTCGGAGAGTAACAATCAAATTGTCGCGATTTGCAAACACGATTGTGATGTCATTCAGGTTAGATTTTGAGCCGATTTTAAGCAAAAATTTGAATTTTCGTGCATTTCGTCGTGGGATATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGTGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTYTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAAGCCTAGGGTTACTGTAGGCTTGTGCACACCAGATATGACGACAAGATGCACAGAAGTGACAATTTCGCTCTCCAAAACACCAAACATGACGACTAAATGCACGAAAATCGAAATTTTTCAAAAAAAAGAGACATTGCAGACTCATAAAAGTATTATTTGATCTACTCCTAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGATTTTGAGCCGATTTTAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCAATACTAATTGCTTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>655</pcr_amplicon_size>
		<canonical_amplicon>TAGATTTTGAGCCGATTTTAAGCAAAAATTTGAATTTTCGTGCATTTCGTCGTGGGATATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGTGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TAGATTTTGAGCCGATTTTAAGCAAAAATTTGAATTTTCGTGCATTTCGTCGTGGGATATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGTGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTYTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36643</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>68442</contig_pos>
        <strand></strand>
        <context>ttttagacga[G/T]taggcttgcr</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGA</left_flank>
        <right_flank>TAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTAAGCAAAAATTTGAATTTTCGTGCATTTCGTCGTGGGATATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGTGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAAGCCTAGGGTTACTGTAGGCTTGTGCACACCAGATATGACGACAAGATGCACAGAAGTGACAATTTCGCTCTCCAAAACACCAAACATGACGACTAAATGCACGAAAATCGAAATTTTTCAAAAAAAAGAGACATTGCAGACTCATAAAAGTATTATTTGATCTACTCCTAAACGACCCGCCAAATTACCGGCAATTAACATTTTTTCAAATTGCAGAATGACGAATGTCCCACCGAATTGGCACTTGCCGCTCAACACGAGCTCGTCGGCGACACGCCCAAAGCACTATTCCCACTGTGTTCTCGTCTATCGACCACTTCGAATTGTATCCCGGTCGTCACGACGGCCATGATGCAGAA</canonical>
            <polymorphic>ATTTTAAGCAAAAATTTGAATTTTCGTGCATTTCGTCGTGGGATATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGTGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAKTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAAGCCTAGGGTTACTGTAGGCTTGTGCACACCAGATATGACGACAAGATGCACAGAAGTGACAATTTCGCTCTCCAAAACACCAAACATGACGACTAAATGCACGAAAATCGAAATTTTTCAAAAAAAAGAGACATTGCAGACTCATAAAAGTATTATTTGATCTACTCCTAAACGACCCGCCAAATTACCGGCAATTAACATTTTTTCAAATTGCAGAATGACGAATGTCCCACCGAATTGGCACTTGCCGCTCAACACGAGCTCGTCGGCGACACGCCCAAAGCACTATTCCCACTGTGTTCTCGTCTATCGACCACTTCGAATTGTATCCCGGTCGTCACGACGGCCATGATGCAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGATTTTGAGCCGATTTTAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCAATACTAATTGCTTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>655</pcr_amplicon_size>
		<canonical_amplicon>AGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>AKTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36644</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>68452</contig_pos>
        <strand></strand>
        <context>ktaggcttgc[G/A]aaattcaaat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGC</left_flank>
        <right_flank>AAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTTGAATTTTCGTGCATTTCGTCGTGGGATATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGTGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAAGCCTAGGGTTACTGTAGGCTTGTGCACACCAGATATGACGACAAGATGCACAGAAGTGACAATTTCGCTCTCCAAAACACCAAACATGACGACTAAATGCACGAAAATCGAAATTTTTCAAAAAAAAGAGACATTGCAGACTCATAAAAGTATTATTTGATCTACTCCTAAACGACCCGCCAAATTACCGGCAATTAACATTTTTTCAAATTGCAGAATGACGAATGTCCCACCGAATTGGCACTTGCCGCTCAACACGAGCTCGTCGGCGACACGCCCAAAGCACTATTCCCACTGTGTTCTCGTCTATCGACCACTTCGAATTGTATCCCGGTCGTCACGACGGCCATGATGCAGAATGTGAGTTTT</canonical>
            <polymorphic>AAAATTTGAATTTTCGTGCATTTCGTCGTGGGATATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGTGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCRAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAAGCCTAGGGTTACTGTAGGCTTGTGCACACCAGATATGACGACAAGATGCACAGAAGTGACAATTTCGCTCTCCAAAACACCAAACATGACGACTAAATGCACGAAAATCGAAATTTTTCAAAAAAAAGAGACATTGCAGACTCATAAAAGTATTATTTGATCTACTCCTAAACGACCCGCCAAATTACCGGCAATTAACATTTTTTCAAATTGCAGAATGACGAATGTCCCACCGAATTGGCACTTGCCGCTCAACACGAGCTCGTCGGCGACACGCCCAAAGCACTATTCCCACTGTGTTCTCGTCTATCGACCACTTCGAATTGTATCCCGGTCGTCACGACGGCCATGATGCAGAATGTGAGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGATTTTGAGCCGATTTTAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCAATACTAATTGCTTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>655</pcr_amplicon_size>
		<canonical_amplicon>CGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>CRAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36645</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>68486</contig_pos>
        <strand></strand>
        <context>caacctcttg[T/G]gtgcattttg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTG</left_flank>
        <right_flank>GTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGTGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAAGCCTAGGGTTACTGTAGGCTTGTGCACACCAGATATGACGACAAGATGCACAGAAGTGACAATTTCGCTCTCCAAAACACCAAACATGACGACTAAATGCACGAAAATCGAAATTTTTCAAAAAAAAGAGACATTGCAGACTCATAAAAGTATTATTTGATCTACTCCTAAACGACCCGCCAAATTACCGGCAATTAACATTTTTTCAAATTGCAGAATGACGAATGTCCCACCGAATTGGCACTTGCCGCTCAACACGAGCTCGTCGGCGACACGCCCAAAGCACTATTCCCACTGTGTTCTCGTCTATCGACCACTTCGAATTGTATCCCGGTCGTCACGACGGCCATGATGCAGAATGTGAGTTTTGGGGGCCTAAAATGGTCAAAAATTGCTGAAAACG</canonical>
            <polymorphic>ATGGTGTTTCACAGATTTCGGATAAAATTGACCTATTTTGCAGTACAAAATAGTCAAAAATAGCCTGAAATTGGTTAAAAGACTATTTTCACTCGAAAATTTGAATTTTCGTGCATTTTGTCGTGAGATATGGTGTTTTATAGATTTTGGCTGAAATTGGCTCATTTTGTGATATAAATTAGTGAAAATGCGGCGCTAAAATTGGTTAAAAGACATTTTTCACTCAAAAATTTGGATTTCTGTGCATTTCTTCGTGGGATATGGTGTTTTTTGTTGAAATTGGCTAATTTTTGCATTTTTAAATCCTAGAATCGCAAAATTCGAGTTTCTGTGCATTTTGTCGTCAAATTCGAGGTTTTTCGAGAAAATTCGAGTTTCCGTGCATTTTGTCGTGGGATGTGGTGTTTTTCGAAAATGTTCTATTTTTAACTAGAAAAATGTTAGTTTTTAGACGAGTAGGCTTGCGAAATTCAAATTTCGCGGCATTCTCAACCTCTTGKGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAAGCCTAGGGTTACTGTAGGCTTGTGCACACCAGATATGACGACAAGATGCACAGAAGTGACAATTTCGCTCTCCAAAACACCAAACATGACGACTAAATGCACGAAAATCGAAATTTTTCAAAAAAAAGAGACATTGCAGACTCATAAAAGTATTATTTGATCTACTCCTAAACGACCCGCCAAATTACCGGCAATTAACATTTTTTCAAATTGCAGAATGACGAATGTCCCACCGAATTGGCACTTGCCGCTCAACACGAGCTCGTCGGCGACACGCCCAAAGCACTATTCCCACTGTGTTCTCGTCTATCGACCACTTCGAATTGTATCCCGGTCGTCACGACGGCCATGATGCAGAATGTGAGTTTTGGGGGCCTAAAATGGTCAAAAATTGCTGAAAACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>131 97 80 76 67 49 40 38 36 24 23 22 22 22 22 22 21 17 17 14 13 12 12 12 12 11 11 10 10 9 8 8 7 6 5 5 3 2 2 2</canonical_bands>
                <polymorphic_bands>131 99 80 76 67 49 40 38 36 24 23 22 22 22 22 22 21 17 17 14 13 12 12 12 12 11 11 10 10 9 8 8 7 6 5 5 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGATTTTGAGCCGATTTTAAG</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCAATACTAATTGCTTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>655</pcr_amplicon_size>
		<canonical_amplicon>GTGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>GKGTGCATTTTGTCGTCAGATTTAGTGCATTGATCGGTGTTTGAGCACAAAATTGAACCTACAGTAACCCGAAACGACAAAGCAATTAGTATTGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36646</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>69901</contig_pos>
        <strand>+</strand>
        <context>TTTTTCCAGA[C/T]ACCGTCGCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTTTTGTAACAAAATCCAGCTATTTCTCAATTTTGCCAATTTTTCCAGA</left_flank>
        <right_flank>ACCGTCGCTCTCTCCAACGCTCTCCAACCCATCGGAAAAGCCACGTGGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACTCAAAAATTTGAATTTCCGTGCATTTCGTCGTAGAATTCGGTGTTTTCTGAAATTTTGCAATTTTAACTCAAAAGATATTGGCTTTCAGCCAAGTCAACTTGCGAATGTAGTTTTTCCGGCTTTTTTAACCTCTTCTGTGCATTCTGTCGTCAGATTCAGTGCATTGATCGAAGTTTGCACACGAAACTGAACCTACAGTATCTCGAAACAAAGCAATAATTGTTATTTTATAAGTTTAGGGTTACTGTGTAAGTTTGCTTCCATGGAAATGCACAGAAATTCAAATGTCTGCCTCTAAAACACCAAACTTGACGACAAATTGCGCGAAATTCGAAATTTTTCGAAAAAAAAGCGTTTTTTTTGCCAATTCCCAAAGTAAACAATTGAATTACATTGAAAACTGGAAAATTTGAATTTATGTGTGCACTTTGTCGTGGGATATGGTGTTTTGTAACAAAATCCAGCTATTTCTCAATTTTGCCAATTTTTCCAGATACCGTCGCTCTCTCCAACGCTCTCCAACCCATCGGAAAAGCCACGTGGCCATCTGACGCACTGGTGTTATGTGAACTCTGGCACTCAATACGAGGGAAGTGTCGGCCAGTCGTCGTCAGGCAAACAGTGTGCACCATGGCTGGATTCCACGTCACGTGACTTCAACGTCCATCGATTTCCCGAGCTGAACGGTGCGAAGAACTACTGTAGGAATCCGGGCGGCAAGAAGAGCAAACCCTGGTGCTATACGCGACCGATGGGACAGGAGGAGTACTGTGACGTGCCACAGTGCCCCGCGGACATGTACCCAGGGCTTGAGAATAAGGGAAAATCGGGAGTCTCGGAGAGTGTCACAGCCCTTTGGGACTCGCTGGACCCCACCATGCAGGTGGCTCTTGTTGGCGGAGGTGTCTTCTTCTCGCTGATCCTCTTGCTGCTATTCTGTTGTGCTTGCTGCTGCCGGGCGAAGAAGAAGAAAACGAAGGCACGTCATCAGAATC</canonical>
            <polymorphic>TGACTCAAAAATTTGAATTTCCGTGCATTTCGTCGTAGAATTCGGTGTTTTCTGAAATTTTGCAATTTTAACTCAAAAGATATTGGCTTTCAGCCAAGTCAACTTGCGAATGTAGTTTTTCCGGCTTTTTTAACCTCTTCTGTGCATTCTGTCGTCAGATTCAGTGCATTGATCGAAGTTTGCACACGAAACTGAACCTACAGTATCTCGAAACAAAGCAATAATTGTTATTTTATAAGTTTAGGGTTACTGTGTAAGTTTGCTTCCATGGAAATGCACAGAAATTCAAATGTCTGCCTCTAAAACACCAAACTTGACGACAAATTGCGCGAAATTCGAAATTTTTCGAAAAAAAAGCGTTTTTTTTGCCAATTCCCAAAGTAAACAATTGAATTACATTGAAAACTGGAAAATTTGAATTTATGTGTGCACTTTGTCGTGGGATATGGTGTTTTGTAACAAAATCCAGCTATTTCTCAATTTTGCCAATTTTTCCAGAYACCGTCGCTCTCTCCAACGCTCTCCAACCCATCGGAAAAGCCACGTGGCCATCTGACGCACTGGTGTTATGTGAACTCTGGCACTCAATACGAGGGAAGTGTCGGCCAGTCGTCGTCAGGCAAACAGTGTGCACCATGGCTGGATTCCACGTCACGTGACTTCAACGTCCATCGATTTCCCGAGCTGAACGGTGCGAAGAACTACTGTAGGAATCCGGGCGGCAAGAAGAGCAAACCCTGGTGCTATACGCGACCGATGGGACAGGAGGAGTACTGTGACGTGCCACAGTGCCCCGCGGACATGTACCCAGGGCTTGAGAATAAGGGAAAATCGGGAGTCTCGGAGAGTGTCACAGCCCTTTGGGACTCGCTGGACCCCACCATGCAGGTGGCTCTTGTTGGCGGAGGTGTCTTCTTCTCGCTGATCCTCTTGCTGCTATTCTGTTGTGCTTGCTGCTGCCGGGCGAAGAAGAAGAAAACGAAGGCACGTCATCAGAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCCAAAGTAAACAATTGAA</pcr_primer_p1>
		<pcr_primer_p2>GACACTTCCCTCGTATTGAGT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ATTCCCAAAGTAAACAATTGAATTACATTGAAAACTGGAAAATTTGAATTTATGTGTGCACTTTGTCGTGGGATATGGTGTTTTGTAACAAAATCCAGCTATTTCTCAATTTTGCCAATTTTTCCAGATACCGTCGCTCTCTCCAACGCTCTCCAACCCATCGGAAAAGCCACGTGGCCATCTGACGCACTGGTGTTATGTGAACTCTGGCACTCAATACGAGGGAAGTGTC</canonical_amplicon>
		<polymorphic_amplicon>ATTCCCAAAGTAAACAATTGAATTACATTGAAAACTGGAAAATTTGAATTTATGTGTGCACTTTGTCGTGGGATATGGTGTTTTGTAACAAAATCCAGCTATTTCTCAATTTTGCCAATTTTTCCAGAYACCGTCGCTCTCTCCAACGCTCTCCAACCCATCGGAAAAGCCACGTGGCCATCTGACGCACTGGTGTTATGTGAACTCTGGCACTCAATACGAGGGAAGTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36647</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>70058</contig_pos>
        <strand>+</strand>
        <context>CCACGTCACG[C/T]GACTTCAACG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGTCGTCGTCAGGCAAACAGTGTGCACCATGGCTGGATTCCACGTCACG</left_flank>
        <right_flank>GACTTCAACGTCCATCGATTTCCCGAGCTGAACGGTGCGAAGAACTACTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTCAGTGCATTGATCGAAGTTTGCACACGAAACTGAACCTACAGTATCTCGAAACAAAGCAATAATTGTTATTTTATAAGTTTAGGGTTACTGTGTAAGTTTGCTTCCATGGAAATGCACAGAAATTCAAATGTCTGCCTCTAAAACACCAAACTTGACGACAAATTGCGCGAAATTCGAAATTTTTCGAAAAAAAAGCGTTTTTTTTGCCAATTCCCAAAGTAAACAATTGAATTACATTGAAAACTGGAAAATTTGAATTTATGTGTGCACTTTGTCGTGGGATATGGTGTTTTGTAACAAAATCCAGCTATTTCTCAATTTTGCCAATTTTTCCAGATACCGTCGCTCTCTCCAACGCTCTCCAACCCATCGGAAAAGCCACGTGGCCATCTGACGCACTGGTGTTATGTGAACTCTGGCACTCAATACGAGGGAAGTGTCGGCCAGTCGTCGTCAGGCAAACAGTGTGCACCATGGCTGGATTCCACGTCACGTGACTTCAACGTCCATCGATTTCCCGAGCTGAACGGTGCGAAGAACTACTGTAGGAATCCGGGCGGCAAGAAGAGCAAACCCTGGTGCTATACGCGACCGATGGGACAGGAGGAGTACTGTGACGTGCCACAGTGCCCCGCGGACATGTACCCAGGGCTTGAGAATAAGGGAAAATCGGGAGTCTCGGAGAGTGTCACAGCCCTTTGGGACTCGCTGGACCCCACCATGCAGGTGGCTCTTGTTGGCGGAGGTGTCTTCTTCTCGCTGATCCTCTTGCTGCTATTCTGTTGTGCTTGCTGCTGCCGGGCGAAGAAGAAGAAAACGAAGGCACGTCATCAGAATCAGGCGCCGTCGGTGATCAACTCGGCGGCCAACTCGGCTTACTATCGGAAATTGAACGGAACGAGCACACCGATTATGGGAGGAGGACGGCAAGGAGGTGGGGAGGACAACGAATTCAACAAAAAACGAAAAAATAATTTTCGAAAAAAAATTGTTTT</canonical>
            <polymorphic>GATTCAGTGCATTGATCGAAGTTTGCACACGAAACTGAACCTACAGTATCTCGAAACAAAGCAATAATTGTTATTTTATAAGTTTAGGGTTACTGTGTAAGTTTGCTTCCATGGAAATGCACAGAAATTCAAATGTCTGCCTCTAAAACACCAAACTTGACGACAAATTGCGCGAAATTCGAAATTTTTCGAAAAAAAAGCGTTTTTTTTGCCAATTCCCAAAGTAAACAATTGAATTACATTGAAAACTGGAAAATTTGAATTTATGTGTGCACTTTGTCGTGGGATATGGTGTTTTGTAACAAAATCCAGCTATTTCTCAATTTTGCCAATTTTTCCAGATACCGTCGCTCTCTCCAACGCTCTCCAACCCATCGGAAAAGCCACGTGGCCATCTGACGCACTGGTGTTATGTGAACTCTGGCACTCAATACGAGGGAAGTGTCGGCCAGTCGTCGTCAGGCAAACAGTGTGCACCATGGCTGGATTCCACGTCACGYGACTTCAACGTCCATCGATTTCCCGAGCTGAACGGTGCGAAGAACTACTGTAGGAATCCGGGCGGCAAGAAGAGCAAACCCTGGTGCTATACGCGACCGATGGGACAGGAGGAGTACTGTGACGTGCCACAGTGCCCCGCGGACATGTACCCAGGGCTTGAGAATAAGGGAAAATCGGGAGTCTCGGAGAGTGTCACAGCCCTTTGGGACTCGCTGGACCCCACCATGCAGGTGGCTCTTGTTGGCGGAGGTGTCTTCTTCTCGCTGATCCTCTTGCTGCTATTCTGTTGTGCTTGCTGCTGCCGGGCGAAGAAGAAGAAAACGAAGGCACGTCATCAGAATCAGGCGCCGTCGGTGATCAACTCGGCGGCCAACTCGGCTTACTATCGGAAATTGAACGGAACGAGCACACCGATTATGGGAGGAGGACGGCAAGGAGGTGGGGAGGACAACGAATTCAACAAAAAACGAAAAAATAATTTTCGAAAAAAAATTGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACGTG</site>
                <isoschizomers>
                    <enzyme>AcvI</enzyme>
                    <enzyme>BbrPI</enzyme>
                    <enzyme>Eco72I</enzyme>
                    <enzyme>PmaCI</enzyme>
                    <enzyme>PmlI</enzyme>
                </isoschizomers>
                <canonical_bands>502 387 111</canonical_bands>
                <polymorphic_bands>613 387</polymorphic_bands>
            </assay>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 387 111</canonical_bands>
                <polymorphic_bands>613 387</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>120 92 68 59 58 52 49 39 38 36 35 31 29 28 27 27 24 19 18 18 16 13 11 10 10 10 9 7 6 5 5 5 4 4 3 3 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>120 92 68 59 58 52 49 40 39 38 35 31 29 28 27 27 24 19 18 18 16 13 11 10 10 10 9 7 6 5 5 5 4 3 3 2 2 2 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>386 208 170 114 106 11 5</canonical_bands>
                <polymorphic_bands>386 208 170 114 106 16</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>308 210 195 120 88 74 5</canonical_bands>
                <polymorphic_bands>308 210 195 125 88 74</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>493 308 120 74 5</canonical_bands>
                <polymorphic_bands>493 308 125 74</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCAATACGAGGGAAGTGTC</pcr_primer_p1>
		<pcr_primer_p2>CGATTTTCCCTTATTCTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACTCAATACGAGGGAAGTGTCGGCCAGTCGTCGTCAGGCAAACAGTGTGCACCATGGCTGGATTCCACGTCACGTGACTTCAACGTCCATCGATTTCCCGAGCTGAACGGTGCGAAGAACTACTGTAGGAATCCGGGCGGCAAGAAGAGCAAACCCTGGTGCTATACGCGACCGATGGGACAGGAGGAGTACTGTGACGTGCCACAGTGCCCCGCGGACATGTACCCAGGGCTTGAGAATAAGGGAAAATCG</canonical_amplicon>
		<polymorphic_amplicon>ACTCAATACGAGGGAAGTGTCGGCCAGTCGTCGTCAGGCAAACAGTGTGCACCATGGCTGGATTCCACGTCACGYGACTTCAACGTCCATCGATTTCCCGAGCTGAACGGTGCGAAGAACTACTGTAGGAATCCGGGCGGCAAGAAGAGCAAACCCTGGTGCTATACGCGACCGATGGGACAGGAGGAGTACTGTGACGTGCCACAGTGCCCCGCGGACATGTACCCAGGGCTTGAGAATAAGGGAAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36648</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>70151</contig_pos>
        <strand>+</strand>
        <context>GGTGCTATAC[A/G]CGACCGATGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACTACTGTAGGAATCCGGGCGGCAAGAAGAGCAAACCCTGGTGCTATAC</left_flank>
        <right_flank>CGACCGATGGGACAGGAGGAGTACTGTGACGTGCCACAGTGCCCCGCGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGTAAGTTTGCTTCCATGGAAATGCACAGAAATTCAAATGTCTGCCTCTAAAACACCAAACTTGACGACAAATTGCGCGAAATTCGAAATTTTTCGAAAAAAAAGCGTTTTTTTTGCCAATTCCCAAAGTAAACAATTGAATTACATTGAAAACTGGAAAATTTGAATTTATGTGTGCACTTTGTCGTGGGATATGGTGTTTTGTAACAAAATCCAGCTATTTCTCAATTTTGCCAATTTTTCCAGATACCGTCGCTCTCTCCAACGCTCTCCAACCCATCGGAAAAGCCACGTGGCCATCTGACGCACTGGTGTTATGTGAACTCTGGCACTCAATACGAGGGAAGTGTCGGCCAGTCGTCGTCAGGCAAACAGTGTGCACCATGGCTGGATTCCACGTCACGTGACTTCAACGTCCATCGATTTCCCGAGCTGAACGGTGCGAAGAACTACTGTAGGAATCCGGGCGGCAAGAAGAGCAAACCCTGGTGCTATACGCGACCGATGGGACAGGAGGAGTACTGTGACGTGCCACAGTGCCCCGCGGACATGTACCCAGGGCTTGAGAATAAGGGAAAATCGGGAGTCTCGGAGAGTGTCACAGCCCTTTGGGACTCGCTGGACCCCACCATGCAGGTGGCTCTTGTTGGCGGAGGTGTCTTCTTCTCGCTGATCCTCTTGCTGCTATTCTGTTGTGCTTGCTGCTGCCGGGCGAAGAAGAAGAAAACGAAGGCACGTCATCAGAATCAGGCGCCGTCGGTGATCAACTCGGCGGCCAACTCGGCTTACTATCGGAAATTGAACGGAACGAGCACACCGATTATGGGAGGAGGACGGCAAGGAGGTGGGGAGGACAACGAATTCAACAAAAAACGAAAAAATAATTTTCGAAAAAAAATTGTTTTTTTTTCAAAATTGATTTTTTCGCAAACATCAATTTTCAAAATGATTTCTACCCGTCACCATCGTCTCTAGCTCGTTTAGAGCTTCAAAACGAT</canonical>
            <polymorphic>TGTGTAAGTTTGCTTCCATGGAAATGCACAGAAATTCAAATGTCTGCCTCTAAAACACCAAACTTGACGACAAATTGCGCGAAATTCGAAATTTTTCGAAAAAAAAGCGTTTTTTTTGCCAATTCCCAAAGTAAACAATTGAATTACATTGAAAACTGGAAAATTTGAATTTATGTGTGCACTTTGTCGTGGGATATGGTGTTTTGTAACAAAATCCAGCTATTTCTCAATTTTGCCAATTTTTCCAGATACCGTCGCTCTCTCCAACGCTCTCCAACCCATCGGAAAAGCCACGTGGCCATCTGACGCACTGGTGTTATGTGAACTCTGGCACTCAATACGAGGGAAGTGTCGGCCAGTCGTCGTCAGGCAAACAGTGTGCACCATGGCTGGATTCCACGTCACGTGACTTCAACGTCCATCGATTTCCCGAGCTGAACGGTGCGAAGAACTACTGTAGGAATCCGGGCGGCAAGAAGAGCAAACCCTGGTGCTATACRCGACCGATGGGACAGGAGGAGTACTGTGACGTGCCACAGTGCCCCGCGGACATGTACCCAGGGCTTGAGAATAAGGGAAAATCGGGAGTCTCGGAGAGTGTCACAGCCCTTTGGGACTCGCTGGACCCCACCATGCAGGTGGCTCTTGTTGGCGGAGGTGTCTTCTTCTCGCTGATCCTCTTGCTGCTATTCTGTTGTGCTTGCTGCTGCCGGGCGAAGAAGAAGAAAACGAAGGCACGTCATCAGAATCAGGCGCCGTCGGTGATCAACTCGGCGGCCAACTCGGCTTACTATCGGAAATTGAACGGAACGAGCACACCGATTATGGGAGGAGGACGGCAAGGAGGTGGGGAGGACAACGAATTCAACAAAAAACGAAAAAATAATTTTCGAAAAAAAATTGTTTTTTTTTCAAAATTGATTTTTTCGCAAACATCAATTTTCAAAATGATTTCTACCCGTCACCATCGTCTCTAGCTCGTTTAGAGCTTCAAAACGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>454 421 79 46</canonical_bands>
                <polymorphic_bands>467 454 79</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGAAGAACTACTGTAGGAATC</pcr_primer_p1>
		<pcr_primer_p2>GAATAGCAGCAAGAGGATCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCGAAGAACTACTGTAGGAATCCGGGCGGCAAGAAGAGCAAACCCTGGTGCTATACGCGACCGATGGGACAGGAGGAGTACTGTGACGTGCCACAGTGCCCCGCGGACATGTACCCAGGGCTTGAGAATAAGGGAAAATCGGGAGTCTCGGAGAGTGTCACAGCCCTTTGGGACTCGCTGGACCCCACCATGCAGGTGGCTCTTGTTGGCGGAGGTGTCTTCTTCTCGCTGATCCTCTTGCTGCTATTC</canonical_amplicon>
		<polymorphic_amplicon>GCGAAGAACTACTGTAGGAATCCGGGCGGCAAGAAGAGCAAACCCTGGTGCTATACRCGACCGATGGGACAGGAGGAGTACTGTGACGTGCCACAGTGCCCCGCGGACATGTACCCAGGGCTTGAGAATAAGGGAAAATCGGGAGTCTCGGAGAGTGTCACAGCCCTTTGGGACTCGCTGGACCCCACCATGCAGGTGGCTCTTGTTGGCGGAGGTGTCTTCTTCTCGCTGATCCTCTTGCTGCTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36649</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>70256</contig_pos>
        <strand>+</strand>
        <context>AGAGTGTCAC[A/T]GCCCTTTGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TACCCAGGGCTTGAGAATAAGGGAAAATCGGGAGTCTCGGAGAGTGTCAC</left_flank>
        <right_flank>GCCCTTTGGGACTCGCTGGACCCCACCATGCAGGTGGCTCTTGTTGGCGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCGTTTTTTTTGCCAATTCCCAAAGTAAACAATTGAATTACATTGAAAACTGGAAAATTTGAATTTATGTGTGCACTTTGTCGTGGGATATGGTGTTTTGTAACAAAATCCAGCTATTTCTCAATTTTGCCAATTTTTCCAGATACCGTCGCTCTCTCCAACGCTCTCCAACCCATCGGAAAAGCCACGTGGCCATCTGACGCACTGGTGTTATGTGAACTCTGGCACTCAATACGAGGGAAGTGTCGGCCAGTCGTCGTCAGGCAAACAGTGTGCACCATGGCTGGATTCCACGTCACGTGACTTCAACGTCCATCGATTTCCCGAGCTGAACGGTGCGAAGAACTACTGTAGGAATCCGGGCGGCAAGAAGAGCAAACCCTGGTGCTATACGCGACCGATGGGACAGGAGGAGTACTGTGACGTGCCACAGTGCCCCGCGGACATGTACCCAGGGCTTGAGAATAAGGGAAAATCGGGAGTCTCGGAGAGTGTCACAGCCCTTTGGGACTCGCTGGACCCCACCATGCAGGTGGCTCTTGTTGGCGGAGGTGTCTTCTTCTCGCTGATCCTCTTGCTGCTATTCTGTTGTGCTTGCTGCTGCCGGGCGAAGAAGAAGAAAACGAAGGCACGTCATCAGAATCAGGCGCCGTCGGTGATCAACTCGGCGGCCAACTCGGCTTACTATCGGAAATTGAACGGAACGAGCACACCGATTATGGGAGGAGGACGGCAAGGAGGTGGGGAGGACAACGAATTCAACAAAAAACGAAAAAATAATTTTCGAAAAAAAATTGTTTTTTTTTCAAAATTGATTTTTTCGCAAACATCAATTTTCAAAATGATTTCTACCCGTCACCATCGTCTCTAGCTCGTTTAGAGCTTCAAAACGATACCCCACACGACCCATTTCCGTTGACTTTGAAATTTCCTGGTTACGGTAGATTCATTTTTCTGCAAACACCAGAATTGACGACATAATTCGGAAATTTTCGATTT</canonical>
            <polymorphic>AGCGTTTTTTTTGCCAATTCCCAAAGTAAACAATTGAATTACATTGAAAACTGGAAAATTTGAATTTATGTGTGCACTTTGTCGTGGGATATGGTGTTTTGTAACAAAATCCAGCTATTTCTCAATTTTGCCAATTTTTCCAGATACCGTCGCTCTCTCCAACGCTCTCCAACCCATCGGAAAAGCCACGTGGCCATCTGACGCACTGGTGTTATGTGAACTCTGGCACTCAATACGAGGGAAGTGTCGGCCAGTCGTCGTCAGGCAAACAGTGTGCACCATGGCTGGATTCCACGTCACGTGACTTCAACGTCCATCGATTTCCCGAGCTGAACGGTGCGAAGAACTACTGTAGGAATCCGGGCGGCAAGAAGAGCAAACCCTGGTGCTATACGCGACCGATGGGACAGGAGGAGTACTGTGACGTGCCACAGTGCCCCGCGGACATGTACCCAGGGCTTGAGAATAAGGGAAAATCGGGAGTCTCGGAGAGTGTCACWGCCCTTTGGGACTCGCTGGACCCCACCATGCAGGTGGCTCTTGTTGGCGGAGGTGTCTTCTTCTCGCTGATCCTCTTGCTGCTATTCTGTTGTGCTTGCTGCTGCCGGGCGAAGAAGAAGAAAACGAAGGCACGTCATCAGAATCAGGCGCCGTCGGTGATCAACTCGGCGGCCAACTCGGCTTACTATCGGAAATTGAACGGAACGAGCACACCGATTATGGGAGGAGGACGGCAAGGAGGTGGGGAGGACAACGAATTCAACAAAAAACGAAAAAATAATTTTCGAAAAAAAATTGTTTTTTTTTCAAAATTGATTTTTTCGCAAACATCAATTTTCAAAATGATTTCTACCCGTCACCATCGTCTCTAGCTCGTTTAGAGCTTCAAAACGATACCCCACACGACCCATTTCCGTTGACTTTGAAATTTCCTGGTTACGGTAGATTCATTTTTCTGCAAACACCAGAATTGACGACATAATTCGGAAATTTTCGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>191 135 129 117 114 71 57 45 43 36 34 11 9 8</canonical_bands>
                <polymorphic_bands>191 135 129 117 114 79 71 57 45 34 11 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGAAGAACTACTGTAGGAATC</pcr_primer_p1>
		<pcr_primer_p2>GAATAGCAGCAAGAGGATCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCGAAGAACTACTGTAGGAATCCGGGCGGCAAGAAGAGCAAACCCTGGTGCTATACGCGACCGATGGGACAGGAGGAGTACTGTGACGTGCCACAGTGCCCCGCGGACATGTACCCAGGGCTTGAGAATAAGGGAAAATCGGGAGTCTCGGAGAGTGTCACAGCCCTTTGGGACTCGCTGGACCCCACCATGCAGGTGGCTCTTGTTGGCGGAGGTGTCTTCTTCTCGCTGATCCTCTTGCTGCTATTC</canonical_amplicon>
		<polymorphic_amplicon>GCGAAGAACTACTGTAGGAATCCGGGCGGCAAGAAGAGCAAACCCTGGTGCTATACGCGACCGATGGGACAGGAGGAGTACTGTGACGTGCCACAGTGCCCCGCGGACATGTACCCAGGGCTTGAGAATAAGGGAAAATCGGGAGTCTCGGAGAGTGTCACWGCCCTTTGGGACTCGCTGGACCCCACCATGCAGGTGGCTCTTGTTGGCGGAGGTGTCTTCTTCTCGCTGATCCTCTTGCTGCTATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36650</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>70379</contig_pos>
        <strand></strand>
        <context>AGAAGAAGAA[A/G]ACGAAGGCAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCTTGCTGCTATTCTGTTGTGCTTGCTGCTGCCGGGCGAAGAAGAAGAA</left_flank>
        <right_flank>ACGAAGGCACGTCATCAGAATCAGGCGCCGTCGGTGATCAACTCGGCGGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTGCCAATTTTTCCAGATACCGTCGCTCTCTCCAACGCTCTCCAACCCATCGGAAAAGCCACGTGGCCATCTGACGCACTGGTGTTATGTGAACTCTGGCACTCAATACGAGGGAAGTGTCGGCCAGTCGTCGTCAGGCAAACAGTGTGCACCATGGCTGGATTCCACGTCACGTGACTTCAACGTCCATCGATTTCCCGAGCTGAACGGTGCGAAGAACTACTGTAGGAATCCGGGCGGCAAGAAGAGCAAACCCTGGTGCTATACGCGACCGATGGGACAGGAGGAGTACTGTGACGTGCCACAGTGCCCCGCGGACATGTACCCAGGGCTTGAGAATAAGGGAAAATCGGGAGTCTCGGAGAGTGTCACAGCCCTTTGGGACTCGCTGGACCCCACCATGCAGGTGGCTCTTGTTGGCGGAGGTGTCTTCTTCTCGCTGATCCTCTTGCTGCTATTCTGTTGTGCTTGCTGCTGCCGGGCGAAGAAGAAGAAAACGAAGGCACGTCATCAGAATCAGGCGCCGTCGGTGATCAACTCGGCGGCCAACTCGGCTTACTATCGGAAATTGAACGGAACGAGCACACCGATTATGGGAGGAGGACGGCAAGGAGGTGGGGAGGACAACGAATTCAACAAAAAACGAAAAAATAATTTTCGAAAAAAAATTGTTTTTTTTTCAAAATTGATTTTTTCGCAAACATCAATTTTCAAAATGATTTCTACCCGTCACCATCGTCTCTAGCTCGTTTAGAGCTTCAAAACGATACCCCACACGACCCATTTCCGTTGACTTTGAAATTTCCTGGTTACGGTAGATTCATTTTTCTGCAAACACCAGAATTGACGACATAATTCGGAAATTTTCGATTTCAAGATAAATAGGTCGTGTTTATACTCATTTCGAAGCTCTTGACAAGCTGAGAACGAATGTGAAATCAGATTTCTGAAAAATTCAAAATTTTTTTTGAAAAATCGAAAAATCAAAATTTGATT</canonical>
            <polymorphic>AATTTTGCCAATTTTTCCAGATACCGTCGCTCTCTCCAACGCTCTCCAACCCATCGGAAAAGCCACGTGGCCATCTGACGCACTGGTGTTATGTGAACTCTGGCACTCAATACGAGGGAAGTGTCGGCCAGTCGTCGTCAGGCAAACAGTGTGCACCATGGCTGGATTCCACGTCACGTGACTTCAACGTCCATCGATTTCCCGAGCTGAACGGTGCGAAGAACTACTGTAGGAATCCGGGCGGCAAGAAGAGCAAACCCTGGTGCTATACGCGACCGATGGGACAGGAGGAGTACTGTGACGTGCCACAGTGCCCCGCGGACATGTACCCAGGGCTTGAGAATAAGGGAAAATCGGGAGTCTCGGAGAGTGTCACAGCCCTTTGGGACTCGCTGGACCCCACCATGCAGGTGGCTCTTGTTGGCGGAGGTGTCTTCTTCTCGCTGATCCTCTTGCTGCTATTCTGTTGTGCTTGCTGCTGCCGGGCGAAGAAGAAGAARACGAAGGCACGTCATCAGAATCAGGCGCCGTCGGTGATCAACTCGGCGGCCAACTCGGCTTACTATCGGAAATTGAACGGAACGAGCACACCGATTATGGGAGGAGGACGGCAAGGAGGTGGGGAGGACAACGAATTCAACAAAAAACGAAAAAATAATTTTCGAAAAAAAATTGTTTTTTTTTCAAAATTGATTTTTTCGCAAACATCAATTTTCAAAATGATTTCTACCCGTCACCATCGTCTCTAGCTCGTTTAGAGCTTCAAAACGATACCCCACACGACCCATTTCCGTTGACTTTGAAATTTCCTGGTTACGGTAGATTCATTTTTCTGCAAACACCAGAATTGACGACATAATTCGGAAATTTTCGATTTCAAGATAAATAGGTCGTGTTTATACTCATTTCGAAGCTCTTGACAAGCTGAGAACGAATGTGAAATCAGATTTCTGAAAAATTCAAAATTTTTTTTGAAAAATCGAAAAATCAAAATTTGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTGAGAATAAGGGAAAATC</pcr_primer_p1>
		<pcr_primer_p2>CCGTTCAATTTCCGATAGTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GCTTGAGAATAAGGGAAAATCGGGAGTCTCGGAGAGTGTCACAGCCCTTTGGGACTCGCTGGACCCCACCATGCAGGTGGCTCTTGTTGGCGGAGGTGTCTTCTTCTCGCTGATCCTCTTGCTGCTATTCTGTTGTGCTTGCTGCTGCCGGGCGAAGAAGAAGAAAACGAAGGCACGTCATCAGAATCAGGCGCCGTCGGTGATCAACTCGGCGGCCAACTCGGCTTACTATCGGAAATTGAACGG</canonical_amplicon>
		<polymorphic_amplicon>GCTTGAGAATAAGGGAAAATCGGGAGTCTCGGAGAGTGTCACAGCCCTTTGGGACTCGCTGGACCCCACCATGCAGGTGGCTCTTGTTGGCGGAGGTGTCTTCTTCTCGCTGATCCTCTTGCTGCTATTCTGTTGTGCTTGCTGCTGCCGGGCGAAGAAGAAGAARACGAAGGCACGTCATCAGAATCAGGCGCCGTCGGTGATCAACTCGGCGGCCAACTCGGCTTACTATCGGAAATTGAACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36651</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>84508</contig_pos>
        <strand>+</strand>
        <context>CTCATTTTTT[A/C]CACCTTTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATTTTTAGGCTATTTTAGGTCATTTCAAGTCGATTTCCCTCATTTTTT</left_flank>
        <right_flank>CACCTTTCCAATAATCGCTCGATGCTTGAGATCCCAAAAAGTGACGGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGGCTGGAAAACTTGATTTTCAGCATGAAAAATTGCTTAAATATCGATTTTCAACATTAAAAATGGGGAAATCAAAGACAAATAACGAAAATTGAGGTTTCTGGAAAAGTTTGGCCTAAAATCTGAAAATATCGATTTAGGCCTAATTTCCACTGCGAAACTCGATTTTCAGCATGGGAAATTGATAAAATATCGATTTTCAATGGGAAAAATGACAAAAAAAGAAAAAAAAAATCGAAAAAATTAGTGAAAAGTGGGCGGAGCTTCCTTCTTCAACTTTTGAATCGAACCAGGGGTACTGTAACCGCGTACATTGAGTTGTCCACACCACAAAGCACACTTTGCGCCGTCAATTTGCGCATCGAGCTGATTTTTCCGTTGAGTTTTGCCTAAAAATTGGAAATTTTCGAAATTAAAAAAAAAAACGATTTTTGAGTCATTTTTTTAAATTTTTAGGCTATTTTAGGTCATTTCAAGTCGATTTCCCTCATTTTTTTCACCTTTCCAATAATCGCTCGATGCTTGAGATCCCAAAAAGTGACGGAATCCGATGAAGCCGTGGCGGCTATTTGATCGTCGAACGAGACGACACCGCTGCTTCCCACAGTGTAGAGAGTGTCCTCGCTCTGCAAGAAAATCGATTTTTTAGGTTATTTTCGGAATTTTTTTCAGCCAAAAATTGACAGAAAACGAAGAAATTGAGCTCAAAATTTGAATTTACGAACTTCCCACCAAAAATCTTCCAAGTTTCTGTGAATGCACCGAGTGCACCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAATTAAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTA</canonical>
            <polymorphic>TTTCGGCTGGAAAACTTGATTTTCAGCATGAAAAATTGCTTAAATATCGATTTTCAACATTAAAAATGGGGAAATCAAAGACAAATAACGAAAATTGAGGTTTCTGGAAAAGTTTGGCCTAAAATCTGAAAATATCGATTTAGGCCTAATTTCCACTGCGAAACTCGATTTTCAGCATGGGAAATTGATAAAATATCGATTTTCAATGGGAAAAATGACAAAAAAAGAAAAAAAAAATCGAAAAAATTAGTGAAAAGTGGGCGGAGCTTCCTTCTTCAACTTTTGAATCGAACCAGGGGTACTGTAACCGCGTACATTGAGTTGTCCACACCACAAAGCACACTTTGCGCCGTCAATTTGCGCATCGAGCTGATTTTTCCGTTGAGTTTTGCCTAAAAATTGGAAATTTTCGAAATTAAAAAAAAAAACGATTTTTGAGTCATTTTTTTAAATTTTTAGGCTATTTTAGGTCATTTCAAGTCGATTTCCCTCATTTTTTMCACCTTTCCAATAATCGCTCGATGCTTGAGATCCCAAAAAGTGACGGAATCCGATGAAGCCGTGGCGGCTATTTGATCGTCGAACGAGACGACACCGCTGCTTCCCACAGTGTAGAGAGTGTCCTCGCTCTGCAAGAAAATCGATTTTTTAGGTTATTTTCGGAATTTTTTTCAGCCAAAAATTGACAGAAAACGAAGAAATTGAGCTCAAAATTTGAATTTACGAACTTCCCACCAAAAATCTTCCAAGTTTCTGTGAATGCACCGAGTGCACCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAATTAAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTAAATTTTTAGGCTATTTTAGG</pcr_primer_p1>
		<pcr_primer_p2>TTCGTTTTCTGTCAATTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTTAAATTTTTAGGCTATTTTAGGTCATTTCAAGTCGATTTCCCTCATTTTTTTCACCTTTCCAATAATCGCTCGATGCTTGAGATCCCAAAAAGTGACGGAATCCGATGAAGCCGTGGCGGCTATTTGATCGTCGAACGAGACGACACCGCTGCTTCCCACAGTGTAGAGAGTGTCCTCGCTCTGCAAGAAAATCGATTTTTTAGGTTATTTTCGGAATTTTTTTCAGCCAAAAATTGACAGAAAACGAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTAAATTTTTAGGCTATTTTAGGTCATTTCAAGTCGATTTCCCTCATTTTTTMCACCTTTCCAATAATCGCTCGATGCTTGAGATCCCAAAAAGTGACGGAATCCGATGAAGCCGTGGCGGCTATTTGATCGTCGAACGAGACGACACCGCTGCTTCCCACAGTGTAGAGAGTGTCCTCGCTCTGCAAGAAAATCGATTTTTTAGGTTATTTTCGGAATTTTTTTCAGCCAAAAATTGACAGAAAACGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36652</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>84872</contig_pos>
        <strand>+</strand>
        <context>CGGAAAACTC[G/T]ATTTTCAGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTC</left_flank>
        <right_flank>ATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAGCTGATTTTTCCGTTGAGTTTTGCCTAAAAATTGGAAATTTTCGAAATTAAAAAAAAAAACGATTTTTGAGTCATTTTTTTAAATTTTTAGGCTATTTTAGGTCATTTCAAGTCGATTTCCCTCATTTTTTTCACCTTTCCAATAATCGCTCGATGCTTGAGATCCCAAAAAGTGACGGAATCCGATGAAGCCGTGGCGGCTATTTGATCGTCGAACGAGACGACACCGCTGCTTCCCACAGTGTAGAGAGTGTCCTCGCTCTGCAAGAAAATCGATTTTTTAGGTTATTTTCGGAATTTTTTTCAGCCAAAAATTGACAGAAAACGAAGAAATTGAGCTCAAAATTTGAATTTACGAACTTCCCACCAAAAATCTTCCAAGTTTCTGTGAATGCACCGAGTGCACCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAATTAAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCTAATTTTTGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAATATATTGATTTCAGCCATATAAAATAGAAAATTCAGCTGAAAAATATGGAAAAAAACCGAAAATTAGGGATTTTTGAGAAATTTTGGCCTAATTTCCGAAAATATCGATTTCGATCTAATTTTCGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAAAAATCGATTTTTGGGGTTCTTACCGTTCCATCACCAAGCGCGTCGGTCACCCGACACGCCAGCTGTCCATTCTCGACATTCCACATGAACAACTGCGACGATCCATAGAATCCGAGCAGGAATTCAGATGACGTGGCGAGTTGGAATGCCCAAG</canonical>
            <polymorphic>TCGAGCTGATTTTTCCGTTGAGTTTTGCCTAAAAATTGGAAATTTTCGAAATTAAAAAAAAAAACGATTTTTGAGTCATTTTTTTAAATTTTTAGGCTATTTTAGGTCATTTCAAGTCGATTTCCCTCATTTTTTTCACCTTTCCAATAATCGCTCGATGCTTGAGATCCCAAAAAGTGACGGAATCCGATGAAGCCGTGGCGGCTATTTGATCGTCGAACGAGACGACACCGCTGCTTCCCACAGTGTAGAGAGTGTCCTCGCTCTGCAAGAAAATCGATTTTTTAGGTTATTTTCGGAATTTTTTTCAGCCAAAAATTGACAGAAAACGAAGAAATTGAGCTCAAAATTTGAATTTACGAACTTCCCACCAAAAATCTTCCAAGTTTCTGTGAATGCACCGAGTGCACCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAATTAAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCKATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCTAATTTTTGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAATATATTGATTTCAGCCATATAAAATAGAAAATTCAGCTGAAAAATATGGAAAAAAACCGAAAATTAGGGATTTTTGAGAAATTTTGGCCTAATTTCCGAAAATATCGATTTCGATCTAATTTTCGTCGGGAAACTCGATTTTCAGCATGAAAAATCGATAAAAATCGATTTTTGGGGTTCTTACCGTTCCATCACCAAGCGCGTCGGTCACCCGACACGCCAGCTGTCCATTCTCGACATTCCACATGAACAACTGCGACGATCCATAGAATCCGAGCAGGAATTCAGATGACGTGGCGAGTTGGAATGCCCAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>162 141 111 80 71 69 61 61 45 38 30 29 24 20 20 20 10 6 2</canonical_bands>
                <polymorphic_bands>162 141 111 80 71 69 61 61 50 45 38 29 24 20 20 10 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACCAAACCTTACGACAAGT</pcr_primer_p1>
		<pcr_primer_p2>AGGCCTAAAACGATATTTTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>CACCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAATTAAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCGATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCT</canonical_amplicon>
		<polymorphic_amplicon>CACCAAACCTTACGACAAGTTGCGGAGTTTCTCGAAAATTAAAAATTCAACGGAAAAACGTCGATTTTGGGGTATTTTCAAACGGAAAACTCKATTTTCAGCATGGAAAATCGATAGAATATTGATTTTTTGCGCTAGAAATATGAAATCAGCAAAAAATCCAAGAAAAATTGCGAAAAAATTAGGGGTTTTCGGAAATTTTTGCCTAAATTTAGAAAATATCGTTTTAGGCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36653</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>86510</contig_pos>
        <strand></strand>
        <context>caaacacgac[C/A]attttccgtt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AATGAAATTTGACAGCTCATCAAGGGCTTCAAAATGATACCAAACACGAC</left_flank>
        <right_flank>ATTTTCCGTTGATTTTGAAAATTTCGGGTTACGGTAGCTGGATTTCGTGG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTTCAAAATCAACGGAAAATGGTCGTGTGGGGTATCATTTTGAAGCTCTAAACGAGCTGAGAATGAATATTATGTCAGATTTTTGAATTTTCGGGTTAAAATATTTTCGGCGGGAAATTCGAAAAAATTCAAAAACCATCAAGCTCACCTTCTTCACACGACGAGTACATAATCGATTGATTATCGATTATCGATCGCTCGCCAATCACCAAACTGACCACAGGGGCGTTGTGAGCCAAGAAAACATTGCTCATCTCAATGTCTTCCCCCTTCTTCGACCAATTCCACATTTTTATCGATCGATCGAACGACGAGGTGATGAGTTGACTGGAATTCCACGTGGCGACTCGAGAAATGGGTTTCTGGTGGGCTCGCACCGATTTGAGATGGTCGATTTGGCGGACACGGATCTGAAAATCGATTATCGATTTTTCTTGATTTTCTAAAATGAAATTTGACAGCTCATCAAGGGCTTCAAAATGATACCAAACACGACCATTTTCCGTTGATTTTGAAAATTTCGGGTTACGGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAAGTTTAGGTGAATATATCGTGTTTACACTTATTTTGAAGCCCTTGACAAGCTGGAAACGATTTTAAAGACGAAAATGCTTTTAAAAAATTGATTTTTGAGAAAAATTCGAAAAGTTCAATTTTTCGATTTTTCGGATTATTTTCAGTTTTTTTTCTTGAAAATTTTTCAATTTTTTCTTTATATTCGTTTTCAGCTCATTTAGAGCTTTCAAATGATACCAAACACGACCATTTTCCGTTGGTTTTGAAAATTTCGGGTTACTGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAATTTGGAGGAACATGGTCATGTTTATACTCATTTTGAAGCTCACGACGAGCTAAGAACGATTCTAATGTTGAAAATGCTGAAAAATTGATTTTTAGGAAAAAAAATTGAAAACAAAAAAATCGAAAATTTAAAA</canonical>
            <polymorphic>GAATTTCAAAATCAACGGAAAATGGTCGTGTGGGGTATCATTTTGAAGCTCTAAACGAGCTGAGAATGAATATTATGTCAGATTTTTGAATTTTCGGGTTAAAATATTTTCGGCGGGAAATTCGAAAAAATTCAAAAACCATCAAGCTCACCTTCTTCACACGACGAGTACATAATCGATTGATTATCGATTATCGATCGCTCGCCAATCACCAAACTGACCACAGGGGCGTTGTGAGCCAAGAAAACATTGCTCATCTCAATGTCTTCCCCCTTCTTCGACCAATTCCACATTTTTATCGATCGATCGAACGACGAGGTGATGAGTTGACTGGAATTCCACGTGGCGACTCGAGAAATGGGTTTCTGGTGGGCTCGCACCGATTTGAGATGGTCGATTTGGCGGACACGGATCTGAAAATCGATTATCGATTTTTCTTGATTTTCTAAAATGAAATTTGACAGCTCATCAAGGGCTTCAAAATGATACCAAACACGACMATTTTCCGTTGATTTTGAAAATTTCGGGTTACGGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAAGTTTAGGTGAATATATCGTGTTTACACTTATTTTGAAGCCCTTGACAAGCTGGAAACGATTTTAAAGACGAAAATGCTTTTAAAAAATTGATTTTTGAGAAAAATTCGAAAAGTTCAATTTTTCGATTTTTCGGATTATTTTCAGTTTTTTTTCTTGAAAATTTTTCAATTTTTTCTTTATATTCGTTTTCAGCTCATTTAGAGCTTTCAAATGATACCAAACACGACCATTTTCCGTTGGTTTTGAAAATTTCGGGTTACTGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAATTTGGAGGAACATGGTCATGTTTATACTCATTTTGAAGCTCACGACGAGCTAAGAACGATTCTAATGTTGAAAATGCTGAAAAATTGATTTTTAGGAAAAAAAATTGAAAACAAAAAAATCGAAAATTTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTGAGATGGTCGATTTG</pcr_primer_p1>
		<pcr_primer_p2>CGATAATCGAAGAACTGACC</pcr_primer_p2>
		<pcr_amplicon_size>873</pcr_amplicon_size>
		<canonical_amplicon>GATTTGAGATGGTCGATTTGGCGGACACGGATCTGAAAATCGATTATCGATTTTTCTTGATTTTCTAAAATGAAATTTGACAGCTCATCAAGGGCTTCAAAATGATACCAAACACGACCATTTTCCGTTGATTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTGAGATGGTCGATTTGGCGGACACGGATCTGAAAATCGATTATCGATTTTTCTTGATTTTCTAAAATGAAATTTGACAGCTCATCAAGGGCTTCAAAATGATACCAAACACGACMATTTTCCGTTGATTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36654</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>86570</contig_pos>
        <strand></strand>
        <context>gtgggacccg[G/A]aatttcaaag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGATTTTGAAAATTTCGGGTTACGGTAGCTGGATTTCGTGGTGGGACCCG</left_flank>
        <right_flank>AATTTCAAAGTTTAGGTGAATATATCGTGTTTACACTTATTTTGAAGCCC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGAATGAATATTATGTCAGATTTTTGAATTTTCGGGTTAAAATATTTTCGGCGGGAAATTCGAAAAAATTCAAAAACCATCAAGCTCACCTTCTTCACACGACGAGTACATAATCGATTGATTATCGATTATCGATCGCTCGCCAATCACCAAACTGACCACAGGGGCGTTGTGAGCCAAGAAAACATTGCTCATCTCAATGTCTTCCCCCTTCTTCGACCAATTCCACATTTTTATCGATCGATCGAACGACGAGGTGATGAGTTGACTGGAATTCCACGTGGCGACTCGAGAAATGGGTTTCTGGTGGGCTCGCACCGATTTGAGATGGTCGATTTGGCGGACACGGATCTGAAAATCGATTATCGATTTTTCTTGATTTTCTAAAATGAAATTTGACAGCTCATCAAGGGCTTCAAAATGATACCAAACACGACCATTTTCCGTTGATTTTGAAAATTTCGGGTTACGGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAAGTTTAGGTGAATATATCGTGTTTACACTTATTTTGAAGCCCTTGACAAGCTGGAAACGATTTTAAAGACGAAAATGCTTTTAAAAAATTGATTTTTGAGAAAAATTCGAAAAGTTCAATTTTTCGATTTTTCGGATTATTTTCAGTTTTTTTTCTTGAAAATTTTTCAATTTTTTCTTTATATTCGTTTTCAGCTCATTTAGAGCTTTCAAATGATACCAAACACGACCATTTTCCGTTGGTTTTGAAAATTTCGGGTTACTGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAATTTGGAGGAACATGGTCATGTTTATACTCATTTTGAAGCTCACGACGAGCTAAGAACGATTCTAATGTTGAAAATGCTGAAAAATTGATTTTTAGGAAAAAAAATTGAAAACAAAAAAATCGAAAATTTAAAATTTTAGATTTTTCCAGATTTTCAAAACTGAAATTTGAATTTTTGACTAAATATTCATTCT</canonical>
            <polymorphic>TGAGAATGAATATTATGTCAGATTTTTGAATTTTCGGGTTAAAATATTTTCGGCGGGAAATTCGAAAAAATTCAAAAACCATCAAGCTCACCTTCTTCACACGACGAGTACATAATCGATTGATTATCGATTATCGATCGCTCGCCAATCACCAAACTGACCACAGGGGCGTTGTGAGCCAAGAAAACATTGCTCATCTCAATGTCTTCCCCCTTCTTCGACCAATTCCACATTTTTATCGATCGATCGAACGACGAGGTGATGAGTTGACTGGAATTCCACGTGGCGACTCGAGAAATGGGTTTCTGGTGGGCTCGCACCGATTTGAGATGGTCGATTTGGCGGACACGGATCTGAAAATCGATTATCGATTTTTCTTGATTTTCTAAAATGAAATTTGACAGCTCATCAAGGGCTTCAAAATGATACCAAACACGACCATTTTCCGTTGATTTTGAAAATTTCGGGTTACGGTAGCTGGATTTCGTGGTGGGACCCGRAATTTCAAAGTTTAGGTGAATATATCGTGTTTACACTTATTTTGAAGCCCTTGACAAGCTGGAAACGATTTTAAAGACGAAAATGCTTTTAAAAAATTGATTTTTGAGAAAAATTCGAAAAGTTCAATTTTTCGATTTTTCGGATTATTTTCAGTTTTTTTTCTTGAAAATTTTTCAATTTTTTCTTTATATTCGTTTTCAGCTCATTTAGAGCTTTCAAATGATACCAAACACGACCATTTTCCGTTGGTTTTGAAAATTTCGGGTTACTGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAATTTGGAGGAACATGGTCATGTTTATACTCATTTTGAAGCTCACGACGAGCTAAGAACGATTCTAATGTTGAAAATGCTGAAAAATTGATTTTTAGGAAAAAAAATTGAAAACAAAAAAATCGAAAATTTAAAATTTTAGATTTTTCCAGATTTTCAAAACTGAAATTTGAATTTTTGACTAAATATTCATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>206 126 120 111 89 65 57 41 41 32 30 28 24 10 7 7 6</canonical_bands>
                <polymorphic_bands>206 152 126 120 89 65 57 41 32 30 28 24 10 7 7 6</polymorphic_bands>
            </assay>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>497 298 205</canonical_bands>
                <polymorphic_bands>795 205</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>497 298 205</canonical_bands>
                <polymorphic_bands>795 205</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>497 298 205</canonical_bands>
                <polymorphic_bands>795 205</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTGAGATGGTCGATTTG</pcr_primer_p1>
		<pcr_primer_p2>CGATAATCGAAGAACTGACC</pcr_primer_p2>
		<pcr_amplicon_size>873</pcr_amplicon_size>
		<canonical_amplicon>GATTTGAGATGGTCGATTTGGCGGACACGGATCTGAAAATCGATTATCGATTTTTCTTGATTTTCTAAAATGAAATTTGACAGCTCATCAAGGGCTTCAAAATGATACCAAACACGACCATTTTCCGTTGATTTTGAAAATTTCGGGTTACGGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAAGTTTAGGTGA</canonical_amplicon>
		<polymorphic_amplicon>GATTTGAGATGGTCGATTTGGCGGACACGGATCTGAAAATCGATTATCGATTTTTCTTGATTTTCTAAAATGAAATTTGACAGCTCATCAAGGGCTTCAAAATGATACCAAACACGACCATTTTCCGTTGATTTTGAAAATTTCGGGTTACGGTAGCTGGATTTCGTGGTGGGACCCGRAATTTCAAAGTTTAGGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36655</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>86588</contig_pos>
        <strand></strand>
        <context>aagtttaggt[G/A]ratatatcgt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTTACGGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAAGTTTAGGT</left_flank>
        <right_flank>AATATATCGTGTTTACACTTATTTTGAAGCCCTTGACAAGCTGGAAACGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGATTTTTGAATTTTCGGGTTAAAATATTTTCGGCGGGAAATTCGAAAAAATTCAAAAACCATCAAGCTCACCTTCTTCACACGACGAGTACATAATCGATTGATTATCGATTATCGATCGCTCGCCAATCACCAAACTGACCACAGGGGCGTTGTGAGCCAAGAAAACATTGCTCATCTCAATGTCTTCCCCCTTCTTCGACCAATTCCACATTTTTATCGATCGATCGAACGACGAGGTGATGAGTTGACTGGAATTCCACGTGGCGACTCGAGAAATGGGTTTCTGGTGGGCTCGCACCGATTTGAGATGGTCGATTTGGCGGACACGGATCTGAAAATCGATTATCGATTTTTCTTGATTTTCTAAAATGAAATTTGACAGCTCATCAAGGGCTTCAAAATGATACCAAACACGACCATTTTCCGTTGATTTTGAAAATTTCGGGTTACGGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAAGTTTAGGTGAATATATCGTGTTTACACTTATTTTGAAGCCCTTGACAAGCTGGAAACGATTTTAAAGACGAAAATGCTTTTAAAAAATTGATTTTTGAGAAAAATTCGAAAAGTTCAATTTTTCGATTTTTCGGATTATTTTCAGTTTTTTTTCTTGAAAATTTTTCAATTTTTTCTTTATATTCGTTTTCAGCTCATTTAGAGCTTTCAAATGATACCAAACACGACCATTTTCCGTTGGTTTTGAAAATTTCGGGTTACTGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAATTTGGAGGAACATGGTCATGTTTATACTCATTTTGAAGCTCACGACGAGCTAAGAACGATTCTAATGTTGAAAATGCTGAAAAATTGATTTTTAGGAAAAAAAATTGAAAACAAAAAAATCGAAAATTTAAAATTTTAGATTTTTCCAGATTTTCAAAACTGAAATTTGAATTTTTGACTAAATATTCATTCTTAGCTCATCAAGAGCTTT</canonical>
            <polymorphic>CAGATTTTTGAATTTTCGGGTTAAAATATTTTCGGCGGGAAATTCGAAAAAATTCAAAAACCATCAAGCTCACCTTCTTCACACGACGAGTACATAATCGATTGATTATCGATTATCGATCGCTCGCCAATCACCAAACTGACCACAGGGGCGTTGTGAGCCAAGAAAACATTGCTCATCTCAATGTCTTCCCCCTTCTTCGACCAATTCCACATTTTTATCGATCGATCGAACGACGAGGTGATGAGTTGACTGGAATTCCACGTGGCGACTCGAGAAATGGGTTTCTGGTGGGCTCGCACCGATTTGAGATGGTCGATTTGGCGGACACGGATCTGAAAATCGATTATCGATTTTTCTTGATTTTCTAAAATGAAATTTGACAGCTCATCAAGGGCTTCAAAATGATACCAAACACGACCATTTTCCGTTGATTTTGAAAATTTCGGGTTACGGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAAGTTTAGGTRAATATATCGTGTTTACACTTATTTTGAAGCCCTTGACAAGCTGGAAACGATTTTAAAGACGAAAATGCTTTTAAAAAATTGATTTTTGAGAAAAATTCGAAAAGTTCAATTTTTCGATTTTTCGGATTATTTTCAGTTTTTTTTCTTGAAAATTTTTCAATTTTTTCTTTATATTCGTTTTCAGCTCATTTAGAGCTTTCAAATGATACCAAACACGACCATTTTCCGTTGGTTTTGAAAATTTCGGGTTACTGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAATTTGGAGGAACATGGTCATGTTTATACTCATTTTGAAGCTCACGACGAGCTAAGAACGATTCTAATGTTGAAAATGCTGAAAAATTGATTTTTAGGAAAAAAAATTGAAAACAAAAAAATCGAAAATTTAAAATTTTAGATTTTTCCAGATTTTCAAAACTGAAATTTGAATTTTTGACTAAATATTCATTCTTAGCTCATCAAGAGCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>198 169 87 72 59 54 54 54 50 31 29 26 26 20 13 12 11 9 8 6 4 3 3 2</canonical_bands>
                <polymorphic_bands>198 169 87 72 59 54 54 54 50 37 31 29 26 20 13 12 9 8 6 4 3 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTGAGATGGTCGATTTG</pcr_primer_p1>
		<pcr_primer_p2>CGATAATCGAAGAACTGACC</pcr_primer_p2>
		<pcr_amplicon_size>873</pcr_amplicon_size>
		<canonical_amplicon>GATTTGAGATGGTCGATTTGGCGGACACGGATCTGAAAATCGATTATCGATTTTTCTTGATTTTCTAAAATGAAATTTGACAGCTCATCAAGGGCTTCAAAATGATACCAAACACGACCATTTTCCGTTGATTTTGAAAATTTCGGGTTACGGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAAGTTTAGGTGAATATATCGTGTTTACACT</canonical_amplicon>
		<polymorphic_amplicon>GATTTGAGATGGTCGATTTGGCGGACACGGATCTGAAAATCGATTATCGATTTTTCTTGATTTTCTAAAATGAAATTTGACAGCTCATCAAGGGCTTCAAAATGATACCAAACACGACCATTTTCCGTTGATTTTGAAAATTTCGGGTTACGGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAAGTTTAGGTRAATATATCGTGTTTACACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36656</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>86589</contig_pos>
        <strand></strand>
        <context>agtttaggtr[A/G]atatatcgtg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTACGGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAAGTTTAGGTG</left_flank>
        <right_flank>ATATATCGTGTTTACACTTATTTTGAAGCCCTTGACAAGCTGGAAACGAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATTTTTGAATTTTCGGGTTAAAATATTTTCGGCGGGAAATTCGAAAAAATTCAAAAACCATCAAGCTCACCTTCTTCACACGACGAGTACATAATCGATTGATTATCGATTATCGATCGCTCGCCAATCACCAAACTGACCACAGGGGCGTTGTGAGCCAAGAAAACATTGCTCATCTCAATGTCTTCCCCCTTCTTCGACCAATTCCACATTTTTATCGATCGATCGAACGACGAGGTGATGAGTTGACTGGAATTCCACGTGGCGACTCGAGAAATGGGTTTCTGGTGGGCTCGCACCGATTTGAGATGGTCGATTTGGCGGACACGGATCTGAAAATCGATTATCGATTTTTCTTGATTTTCTAAAATGAAATTTGACAGCTCATCAAGGGCTTCAAAATGATACCAAACACGACCATTTTCCGTTGATTTTGAAAATTTCGGGTTACGGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAAGTTTAGGTGAATATATCGTGTTTACACTTATTTTGAAGCCCTTGACAAGCTGGAAACGATTTTAAAGACGAAAATGCTTTTAAAAAATTGATTTTTGAGAAAAATTCGAAAAGTTCAATTTTTCGATTTTTCGGATTATTTTCAGTTTTTTTTCTTGAAAATTTTTCAATTTTTTCTTTATATTCGTTTTCAGCTCATTTAGAGCTTTCAAATGATACCAAACACGACCATTTTCCGTTGGTTTTGAAAATTTCGGGTTACTGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAATTTGGAGGAACATGGTCATGTTTATACTCATTTTGAAGCTCACGACGAGCTAAGAACGATTCTAATGTTGAAAATGCTGAAAAATTGATTTTTAGGAAAAAAAATTGAAAACAAAAAAATCGAAAATTTAAAATTTTAGATTTTTCCAGATTTTCAAAACTGAAATTTGAATTTTTGACTAAATATTCATTCTTAGCTCATCAAGAGCTTTG</canonical>
            <polymorphic>AGATTTTTGAATTTTCGGGTTAAAATATTTTCGGCGGGAAATTCGAAAAAATTCAAAAACCATCAAGCTCACCTTCTTCACACGACGAGTACATAATCGATTGATTATCGATTATCGATCGCTCGCCAATCACCAAACTGACCACAGGGGCGTTGTGAGCCAAGAAAACATTGCTCATCTCAATGTCTTCCCCCTTCTTCGACCAATTCCACATTTTTATCGATCGATCGAACGACGAGGTGATGAGTTGACTGGAATTCCACGTGGCGACTCGAGAAATGGGTTTCTGGTGGGCTCGCACCGATTTGAGATGGTCGATTTGGCGGACACGGATCTGAAAATCGATTATCGATTTTTCTTGATTTTCTAAAATGAAATTTGACAGCTCATCAAGGGCTTCAAAATGATACCAAACACGACCATTTTCCGTTGATTTTGAAAATTTCGGGTTACGGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAAGTTTAGGTGRATATATCGTGTTTACACTTATTTTGAAGCCCTTGACAAGCTGGAAACGATTTTAAAGACGAAAATGCTTTTAAAAAATTGATTTTTGAGAAAAATTCGAAAAGTTCAATTTTTCGATTTTTCGGATTATTTTCAGTTTTTTTTCTTGAAAATTTTTCAATTTTTTCTTTATATTCGTTTTCAGCTCATTTAGAGCTTTCAAATGATACCAAACACGACCATTTTCCGTTGGTTTTGAAAATTTCGGGTTACTGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAATTTGGAGGAACATGGTCATGTTTATACTCATTTTGAAGCTCACGACGAGCTAAGAACGATTCTAATGTTGAAAATGCTGAAAAATTGATTTTTAGGAAAAAAAATTGAAAACAAAAAAATCGAAAATTTAAAATTTTAGATTTTTCCAGATTTTCAAAACTGAAATTTGAATTTTTGACTAAATATTCATTCTTAGCTCATCAAGAGCTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTGAGATGGTCGATTTG</pcr_primer_p1>
		<pcr_primer_p2>CGATAATCGAAGAACTGACC</pcr_primer_p2>
		<pcr_amplicon_size>873</pcr_amplicon_size>
		<canonical_amplicon>GATTTGAGATGGTCGATTTGGCGGACACGGATCTGAAAATCGATTATCGATTTTTCTTGATTTTCTAAAATGAAATTTGACAGCTCATCAAGGGCTTCAAAATGATACCAAACACGACCATTTTCCGTTGATTTTGAAAATTTCGGGTTACGGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAAGTTTAGGTGAATATATCGTGTTTACACTT</canonical_amplicon>
		<polymorphic_amplicon>GATTTGAGATGGTCGATTTGGCGGACACGGATCTGAAAATCGATTATCGATTTTTCTTGATTTTCTAAAATGAAATTTGACAGCTCATCAAGGGCTTCAAAATGATACCAAACACGACCATTTTCCGTTGATTTTGAAAATTTCGGGTTACGGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAAGTTTAGGTGRATATATCGTGTTTACACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36657</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>86608</contig_pos>
        <strand></strand>
        <context>tgtttacact[T/C]attttgaagc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGGTGGGACCCGGAATTTCAAAGTTTAGGTGAATATATCGTGTTTACACT</left_flank>
        <right_flank>ATTTTGAAGCCCTTGACAAGCTGGAAACGATTTTAAAGACGAAAATGCTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAATATTTTCGGCGGGAAATTCGAAAAAATTCAAAAACCATCAAGCTCACCTTCTTCACACGACGAGTACATAATCGATTGATTATCGATTATCGATCGCTCGCCAATCACCAAACTGACCACAGGGGCGTTGTGAGCCAAGAAAACATTGCTCATCTCAATGTCTTCCCCCTTCTTCGACCAATTCCACATTTTTATCGATCGATCGAACGACGAGGTGATGAGTTGACTGGAATTCCACGTGGCGACTCGAGAAATGGGTTTCTGGTGGGCTCGCACCGATTTGAGATGGTCGATTTGGCGGACACGGATCTGAAAATCGATTATCGATTTTTCTTGATTTTCTAAAATGAAATTTGACAGCTCATCAAGGGCTTCAAAATGATACCAAACACGACCATTTTCCGTTGATTTTGAAAATTTCGGGTTACGGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAAGTTTAGGTGAATATATCGTGTTTACACTTATTTTGAAGCCCTTGACAAGCTGGAAACGATTTTAAAGACGAAAATGCTTTTAAAAAATTGATTTTTGAGAAAAATTCGAAAAGTTCAATTTTTCGATTTTTCGGATTATTTTCAGTTTTTTTTCTTGAAAATTTTTCAATTTTTTCTTTATATTCGTTTTCAGCTCATTTAGAGCTTTCAAATGATACCAAACACGACCATTTTCCGTTGGTTTTGAAAATTTCGGGTTACTGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAATTTGGAGGAACATGGTCATGTTTATACTCATTTTGAAGCTCACGACGAGCTAAGAACGATTCTAATGTTGAAAATGCTGAAAAATTGATTTTTAGGAAAAAAAATTGAAAACAAAAAAATCGAAAATTTAAAATTTTAGATTTTTCCAGATTTTCAAAACTGAAATTTGAATTTTTGACTAAATATTCATTCTTAGCTCATCAAGAGCTTTGAAATGATACCAAGCAAGCC</canonical>
            <polymorphic>TTAAAATATTTTCGGCGGGAAATTCGAAAAAATTCAAAAACCATCAAGCTCACCTTCTTCACACGACGAGTACATAATCGATTGATTATCGATTATCGATCGCTCGCCAATCACCAAACTGACCACAGGGGCGTTGTGAGCCAAGAAAACATTGCTCATCTCAATGTCTTCCCCCTTCTTCGACCAATTCCACATTTTTATCGATCGATCGAACGACGAGGTGATGAGTTGACTGGAATTCCACGTGGCGACTCGAGAAATGGGTTTCTGGTGGGCTCGCACCGATTTGAGATGGTCGATTTGGCGGACACGGATCTGAAAATCGATTATCGATTTTTCTTGATTTTCTAAAATGAAATTTGACAGCTCATCAAGGGCTTCAAAATGATACCAAACACGACCATTTTCCGTTGATTTTGAAAATTTCGGGTTACGGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAAGTTTAGGTGAATATATCGTGTTTACACTYATTTTGAAGCCCTTGACAAGCTGGAAACGATTTTAAAGACGAAAATGCTTTTAAAAAATTGATTTTTGAGAAAAATTCGAAAAGTTCAATTTTTCGATTTTTCGGATTATTTTCAGTTTTTTTTCTTGAAAATTTTTCAATTTTTTCTTTATATTCGTTTTCAGCTCATTTAGAGCTTTCAAATGATACCAAACACGACCATTTTCCGTTGGTTTTGAAAATTTCGGGTTACTGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAATTTGGAGGAACATGGTCATGTTTATACTCATTTTGAAGCTCACGACGAGCTAAGAACGATTCTAATGTTGAAAATGCTGAAAAATTGATTTTTAGGAAAAAAAATTGAAAACAAAAAAATCGAAAATTTAAAATTTTAGATTTTTCCAGATTTTCAAAACTGAAATTTGAATTTTTGACTAAATATTCATTCTTAGCTCATCAAGAGCTTTGAAATGATACCAAGCAAGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTGAGATGGTCGATTTG</pcr_primer_p1>
		<pcr_primer_p2>CGATAATCGAAGAACTGACC</pcr_primer_p2>
		<pcr_amplicon_size>873</pcr_amplicon_size>
		<canonical_amplicon>GATTTGAGATGGTCGATTTGGCGGACACGGATCTGAAAATCGATTATCGATTTTTCTTGATTTTCTAAAATGAAATTTGACAGCTCATCAAGGGCTTCAAAATGATACCAAACACGACCATTTTCCGTTGATTTTGAAAATTTCGGGTTACGGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAAGTTTAGGTGAATATATCGTGTTTACACTTATTTTGAAGCCCTTGACAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTGAGATGGTCGATTTGGCGGACACGGATCTGAAAATCGATTATCGATTTTTCTTGATTTTCTAAAATGAAATTTGACAGCTCATCAAGGGCTTCAAAATGATACCAAACACGACCATTTTCCGTTGATTTTGAAAATTTCGGGTTACGGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAAGTTTAGGTGAATATATCGTGTTTACACTYATTTTGAAGCCCTTGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36658</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>86647</contig_pos>
        <strand></strand>
        <context>gattttaaag[A/T]craaaatgct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGTTTACACTTATTTTGAAGCCCTTGACAAGCTGGAAACGATTTTAAAG</left_flank>
        <right_flank>CGAAAATGCTTTTAAAAAATTGATTTTTGAGAAAAATTCGAAAAGTTCAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCATCAAGCTCACCTTCTTCACACGACGAGTACATAATCGATTGATTATCGATTATCGATCGCTCGCCAATCACCAAACTGACCACAGGGGCGTTGTGAGCCAAGAAAACATTGCTCATCTCAATGTCTTCCCCCTTCTTCGACCAATTCCACATTTTTATCGATCGATCGAACGACGAGGTGATGAGTTGACTGGAATTCCACGTGGCGACTCGAGAAATGGGTTTCTGGTGGGCTCGCACCGATTTGAGATGGTCGATTTGGCGGACACGGATCTGAAAATCGATTATCGATTTTTCTTGATTTTCTAAAATGAAATTTGACAGCTCATCAAGGGCTTCAAAATGATACCAAACACGACCATTTTCCGTTGATTTTGAAAATTTCGGGTTACGGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAAGTTTAGGTGAATATATCGTGTTTACACTTATTTTGAAGCCCTTGACAAGCTGGAAACGATTTTAAAGACGAAAATGCTTTTAAAAAATTGATTTTTGAGAAAAATTCGAAAAGTTCAATTTTTCGATTTTTCGGATTATTTTCAGTTTTTTTTCTTGAAAATTTTTCAATTTTTTCTTTATATTCGTTTTCAGCTCATTTAGAGCTTTCAAATGATACCAAACACGACCATTTTCCGTTGGTTTTGAAAATTTCGGGTTACTGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAATTTGGAGGAACATGGTCATGTTTATACTCATTTTGAAGCTCACGACGAGCTAAGAACGATTCTAATGTTGAAAATGCTGAAAAATTGATTTTTAGGAAAAAAAATTGAAAACAAAAAAATCGAAAATTTAAAATTTTAGATTTTTCCAGATTTTCAAAACTGAAATTTGAATTTTTGACTAAATATTCATTCTTAGCTCATCAAGAGCTTTGAAATGATACCAAGCAAGCCTATTCTATTTTGATTTTGAAAATTTCGGGTTACTGTAGC</canonical>
            <polymorphic>ACCATCAAGCTCACCTTCTTCACACGACGAGTACATAATCGATTGATTATCGATTATCGATCGCTCGCCAATCACCAAACTGACCACAGGGGCGTTGTGAGCCAAGAAAACATTGCTCATCTCAATGTCTTCCCCCTTCTTCGACCAATTCCACATTTTTATCGATCGATCGAACGACGAGGTGATGAGTTGACTGGAATTCCACGTGGCGACTCGAGAAATGGGTTTCTGGTGGGCTCGCACCGATTTGAGATGGTCGATTTGGCGGACACGGATCTGAAAATCGATTATCGATTTTTCTTGATTTTCTAAAATGAAATTTGACAGCTCATCAAGGGCTTCAAAATGATACCAAACACGACCATTTTCCGTTGATTTTGAAAATTTCGGGTTACGGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAAGTTTAGGTGAATATATCGTGTTTACACTTATTTTGAAGCCCTTGACAAGCTGGAAACGATTTTAAAGWCGAAAATGCTTTTAAAAAATTGATTTTTGAGAAAAATTCGAAAAGTTCAATTTTTCGATTTTTCGGATTATTTTCAGTTTTTTTTCTTGAAAATTTTTCAATTTTTTCTTTATATTCGTTTTCAGCTCATTTAGAGCTTTCAAATGATACCAAACACGACCATTTTCCGTTGGTTTTGAAAATTTCGGGTTACTGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAATTTGGAGGAACATGGTCATGTTTATACTCATTTTGAAGCTCACGACGAGCTAAGAACGATTCTAATGTTGAAAATGCTGAAAAATTGATTTTTAGGAAAAAAAATTGAAAACAAAAAAATCGAAAATTTAAAATTTTAGATTTTTCCAGATTTTCAAAACTGAAATTTGAATTTTTGACTAAATATTCATTCTTAGCTCATCAAGAGCTTTGAAATGATACCAAGCAAGCCTATTCTATTTTGATTTTGAAAATTTCGGGTTACTGTAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTGAGATGGTCGATTTG</pcr_primer_p1>
		<pcr_primer_p2>CGATAATCGAAGAACTGACC</pcr_primer_p2>
		<pcr_amplicon_size>873</pcr_amplicon_size>
		<canonical_amplicon>GATTTGAGATGGTCGATTTGGCGGACACGGATCTGAAAATCGATTATCGATTTTTCTTGATTTTCTAAAATGAAATTTGACAGCTCATCAAGGGCTTCAAAATGATACCAAACACGACCATTTTCCGTTGATTTTGAAAATTTCGGGTTACGGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAAGTTTAGGTGAATATATCGTGTTTACACTTATTTTGAAGCCCTTGACAAGCTGGAAACGATTTTAAAGACGAAAATGCTTTTAAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTGAGATGGTCGATTTGGCGGACACGGATCTGAAAATCGATTATCGATTTTTCTTGATTTTCTAAAATGAAATTTGACAGCTCATCAAGGGCTTCAAAATGATACCAAACACGACCATTTTCCGTTGATTTTGAAAATTTCGGGTTACGGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAAGTTTAGGTGAATATATCGTGTTTACACTTATTTTGAAGCCCTTGACAAGCTGGAAACGATTTTAAAGWCGAAAATGCTTTTAAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36659</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>86649</contig_pos>
        <strand></strand>
        <context>ttttaaagwc[G/A]aaaatgcttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTTTACACTTATTTTGAAGCCCTTGACAAGCTGGAAACGATTTTAAAGAC</left_flank>
        <right_flank>AAAATGCTTTTAAAAAATTGATTTTTGAGAAAAATTCGAAAAGTTCAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCAAGCTCACCTTCTTCACACGACGAGTACATAATCGATTGATTATCGATTATCGATCGCTCGCCAATCACCAAACTGACCACAGGGGCGTTGTGAGCCAAGAAAACATTGCTCATCTCAATGTCTTCCCCCTTCTTCGACCAATTCCACATTTTTATCGATCGATCGAACGACGAGGTGATGAGTTGACTGGAATTCCACGTGGCGACTCGAGAAATGGGTTTCTGGTGGGCTCGCACCGATTTGAGATGGTCGATTTGGCGGACACGGATCTGAAAATCGATTATCGATTTTTCTTGATTTTCTAAAATGAAATTTGACAGCTCATCAAGGGCTTCAAAATGATACCAAACACGACCATTTTCCGTTGATTTTGAAAATTTCGGGTTACGGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAAGTTTAGGTGAATATATCGTGTTTACACTTATTTTGAAGCCCTTGACAAGCTGGAAACGATTTTAAAGACGAAAATGCTTTTAAAAAATTGATTTTTGAGAAAAATTCGAAAAGTTCAATTTTTCGATTTTTCGGATTATTTTCAGTTTTTTTTCTTGAAAATTTTTCAATTTTTTCTTTATATTCGTTTTCAGCTCATTTAGAGCTTTCAAATGATACCAAACACGACCATTTTCCGTTGGTTTTGAAAATTTCGGGTTACTGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAATTTGGAGGAACATGGTCATGTTTATACTCATTTTGAAGCTCACGACGAGCTAAGAACGATTCTAATGTTGAAAATGCTGAAAAATTGATTTTTAGGAAAAAAAATTGAAAACAAAAAAATCGAAAATTTAAAATTTTAGATTTTTCCAGATTTTCAAAACTGAAATTTGAATTTTTGACTAAATATTCATTCTTAGCTCATCAAGAGCTTTGAAATGATACCAAGCAAGCCTATTCTATTTTGATTTTGAAAATTTCGGGTTACTGTAGCTC</canonical>
            <polymorphic>CATCAAGCTCACCTTCTTCACACGACGAGTACATAATCGATTGATTATCGATTATCGATCGCTCGCCAATCACCAAACTGACCACAGGGGCGTTGTGAGCCAAGAAAACATTGCTCATCTCAATGTCTTCCCCCTTCTTCGACCAATTCCACATTTTTATCGATCGATCGAACGACGAGGTGATGAGTTGACTGGAATTCCACGTGGCGACTCGAGAAATGGGTTTCTGGTGGGCTCGCACCGATTTGAGATGGTCGATTTGGCGGACACGGATCTGAAAATCGATTATCGATTTTTCTTGATTTTCTAAAATGAAATTTGACAGCTCATCAAGGGCTTCAAAATGATACCAAACACGACCATTTTCCGTTGATTTTGAAAATTTCGGGTTACGGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAAGTTTAGGTGAATATATCGTGTTTACACTTATTTTGAAGCCCTTGACAAGCTGGAAACGATTTTAAAGACRAAAATGCTTTTAAAAAATTGATTTTTGAGAAAAATTCGAAAAGTTCAATTTTTCGATTTTTCGGATTATTTTCAGTTTTTTTTCTTGAAAATTTTTCAATTTTTTCTTTATATTCGTTTTCAGCTCATTTAGAGCTTTCAAATGATACCAAACACGACCATTTTCCGTTGGTTTTGAAAATTTCGGGTTACTGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAATTTGGAGGAACATGGTCATGTTTATACTCATTTTGAAGCTCACGACGAGCTAAGAACGATTCTAATGTTGAAAATGCTGAAAAATTGATTTTTAGGAAAAAAAATTGAAAACAAAAAAATCGAAAATTTAAAATTTTAGATTTTTCCAGATTTTCAAAACTGAAATTTGAATTTTTGACTAAATATTCATTCTTAGCTCATCAAGAGCTTTGAAATGATACCAAGCAAGCCTATTCTATTTTGATTTTGAAAATTTCGGGTTACTGTAGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTGAGATGGTCGATTTG</pcr_primer_p1>
		<pcr_primer_p2>CGATAATCGAAGAACTGACC</pcr_primer_p2>
		<pcr_amplicon_size>873</pcr_amplicon_size>
		<canonical_amplicon>GATTTGAGATGGTCGATTTGGCGGACACGGATCTGAAAATCGATTATCGATTTTTCTTGATTTTCTAAAATGAAATTTGACAGCTCATCAAGGGCTTCAAAATGATACCAAACACGACCATTTTCCGTTGATTTTGAAAATTTCGGGTTACGGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAAGTTTAGGTGAATATATCGTGTTTACACTTATTTTGAAGCCCTTGACAAGCTGGAAACGATTTTAAAGACGAAAATGCTTTTAAAAAATT</canonical_amplicon>
		<polymorphic_amplicon>GATTTGAGATGGTCGATTTGGCGGACACGGATCTGAAAATCGATTATCGATTTTTCTTGATTTTCTAAAATGAAATTTGACAGCTCATCAAGGGCTTCAAAATGATACCAAACACGACCATTTTCCGTTGATTTTGAAAATTTCGGGTTACGGTAGCTGGATTTCGTGGTGGGACCCGGAATTTCAAAGTTTAGGTGAATATATCGTGTTTACACTTATTTTGAAGCCCTTGACAAGCTGGAAACGATTTTAAAGACRAAAATGCTTTTAAAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36660</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>101036</contig_pos>
        <strand>+</strand>
        <context>CTGAAACTGT[C/G]ATTTTTAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGAAATTGGCATTTTTGTTTCAAAATCAACATTTTCTGACCTGAAACTGT</left_flank>
        <right_flank>ATTTTTAGAATCAAAAATTGCTCATTTTTGAGCTCGAAAATGAGCAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAGGCTATTTTTTAGATCAAAATGAGCATTTCAAATTCAGAAATTGCTATTTTTGAATATCAAATTTAGCATTTTCAGGTCCCAAAATTGGCAAAAAATTGTCATTTTTGAGCCATTTTGCAGCTTAAAAACCGAATTTTCCGTATTTTAGGAGTAAAATTTGAGATTTTTCACTAAAAATTCATATTGATGAAAATGGAGAACGTTTAGACTTTTTTGGGACAATTTTTAACCAATTTTTGACAATTTTTGATGGGGTTTTCGGAGAATTTCCAAGTCAAAATTAGGCCTTTTCAGATTGAAATTTGATGATTCTTGATCCAAAATGTATCATTTTTGGTGTCAAAATTCACATTTTTAGGCTCAAAATTAGCATTTCAAGTCGAAAATCAACATTTTCAGACCTGAAATTGTCATTTTTTGCTTCAAAATCGATATTTTCAGACCTGAAATTGGCATTTTTGTTTCAAAATCAACATTTTCTGACCTGAAACTGTCATTTTTAGAATCAAAAATTGCTCATTTTTGAGCTCGAAAATGAGCAATTTTAATACCTTAAATTGACATATTTTCGGGCTCAAAATCAACATTTTCAGCCCAAAAATCATCGAAATTTCAGACCCAAAAACTATCATTTTTTGGCCTCAAATTTCACGAAAAATATGCCATTTTTTAGCTAAAAATCAGCATTTTCAGACCTAAAATTGATATTTTTCTGCTCAAAATGTATCATTTTTTAGAGTAATATTTGACATTTTTATGGCGGAAAATAGGAACTTTCGGTGCTAAATATGCCATTTTCGGGCTCAAAATCAACATTTTCAGCTCAAAAAACTATCATTTTTGCCTTCAAATTTGACGATTATCCCTTAATTTTTCGAAATCTGAAACTTACACGAAGCGTGTTCTTGACGAGCGCATCAAGCTTGTCCGGTTGCATGTTGTTCGACGACGAGGTGACAATATCCATGAGTTGACGACCGATTTGAGCGTCTCCC</canonical>
            <polymorphic>TTAAGGCTATTTTTTAGATCAAAATGAGCATTTCAAATTCAGAAATTGCTATTTTTGAATATCAAATTTAGCATTTTCAGGTCCCAAAATTGGCAAAAAATTGTCATTTTTGAGCCATTTTGCAGCTTAAAAACCGAATTTTCCGTATTTTAGGAGTAAAATTTGAGATTTTTCACTAAAAATTCATATTGATGAAAATGGAGAACGTTTAGACTTTTTTGGGACAATTTTTAACCAATTTTTGACAATTTTTGATGGGGTTTTCGGAGAATTTCCAAGTCAAAATTAGGCCTTTTCAGATTGAAATTTGATGATTCTTGATCCAAAATGTATCATTTTTGGTGTCAAAATTCACATTTTTAGGCTCAAAATTAGCATTTCAAGTCGAAAATCAACATTTTCAGACCTGAAATTGTCATTTTTTGCTTCAAAATCGATATTTTCAGACCTGAAATTGGCATTTTTGTTTCAAAATCAACATTTTCTGACCTGAAACTGTSATTTTTAGAATCAAAAATTGCTCATTTTTGAGCTCGAAAATGAGCAATTTTAATACCTTAAATTGACATATTTTCGGGCTCAAAATCAACATTTTCAGCCCAAAAATCATCGAAATTTCAGACCCAAAAACTATCATTTTTTGGCCTCAAATTTCACGAAAAATATGCCATTTTTTAGCTAAAAATCAGCATTTTCAGACCTAAAATTGATATTTTTCTGCTCAAAATGTATCATTTTTTAGAGTAATATTTGACATTTTTATGGCGGAAAATAGGAACTTTCGGTGCTAAATATGCCATTTTCGGGCTCAAAATCAACATTTTCAGCTCAAAAAACTATCATTTTTGCCTTCAAATTTGACGATTATCCCTTAATTTTTCGAAATCTGAAACTTACACGAAGCGTGTTCTTGACGAGCGCATCAAGCTTGTCCGGTTGCATGTTGTTCGACGACGAGGTGACAATATCCATGAGTTGACGACCGATTTGAGCGTCTCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAGTCGAAAATCAACAT</pcr_primer_p1>
		<pcr_primer_p2>TGATAGTTTTTGGGTCTGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAGTCGAAAATCAACATTTTCAGACCTGAAATTGTCATTTTTTGCTTCAAAATCGATATTTTCAGACCTGAAATTGGCATTTTTGTTTCAAAATCAACATTTTCTGACCTGAAACTGTCATTTTTAGAATCAAAAATTGCTCATTTTTGAGCTCGAAAATGAGCAATTTTAATACCTTAAATTGACATATTTTCGGGCTCAAAATCAACATTTTCAGCCCAAAAATCATCGAAATTTCAGACCCAAAAACTATCA</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAGTCGAAAATCAACATTTTCAGACCTGAAATTGTCATTTTTTGCTTCAAAATCGATATTTTCAGACCTGAAATTGGCATTTTTGTTTCAAAATCAACATTTTCTGACCTGAAACTGTSATTTTTAGAATCAAAAATTGCTCATTTTTGAGCTCGAAAATGAGCAATTTTAATACCTTAAATTGACATATTTTCGGGCTCAAAATCAACATTTTCAGCCCAAAAATCATCGAAATTTCAGACCCAAAAACTATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36661</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>101141</contig_pos>
        <strand>+</strand>
        <context>TCAGCCCAAA[A/G]ATCATCGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCTTAAATTGACATATTTTCGGGCTCAAAATCAACATTTTCAGCCCAAA</left_flank>
        <right_flank>ATCATCGAAATTTCAGACCCAAAAACTATCATTTTTTGGCCTCAAATTTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTGAGCCATTTTGCAGCTTAAAAACCGAATTTTCCGTATTTTAGGAGTAAAATTTGAGATTTTTCACTAAAAATTCATATTGATGAAAATGGAGAACGTTTAGACTTTTTTGGGACAATTTTTAACCAATTTTTGACAATTTTTGATGGGGTTTTCGGAGAATTTCCAAGTCAAAATTAGGCCTTTTCAGATTGAAATTTGATGATTCTTGATCCAAAATGTATCATTTTTGGTGTCAAAATTCACATTTTTAGGCTCAAAATTAGCATTTCAAGTCGAAAATCAACATTTTCAGACCTGAAATTGTCATTTTTTGCTTCAAAATCGATATTTTCAGACCTGAAATTGGCATTTTTGTTTCAAAATCAACATTTTCTGACCTGAAACTGTCATTTTTAGAATCAAAAATTGCTCATTTTTGAGCTCGAAAATGAGCAATTTTAATACCTTAAATTGACATATTTTCGGGCTCAAAATCAACATTTTCAGCCCAAAAATCATCGAAATTTCAGACCCAAAAACTATCATTTTTTGGCCTCAAATTTCACGAAAAATATGCCATTTTTTAGCTAAAAATCAGCATTTTCAGACCTAAAATTGATATTTTTCTGCTCAAAATGTATCATTTTTTAGAGTAATATTTGACATTTTTATGGCGGAAAATAGGAACTTTCGGTGCTAAATATGCCATTTTCGGGCTCAAAATCAACATTTTCAGCTCAAAAAACTATCATTTTTGCCTTCAAATTTGACGATTATCCCTTAATTTTTCGAAATCTGAAACTTACACGAAGCGTGTTCTTGACGAGCGCATCAAGCTTGTCCGGTTGCATGTTGTTCGACGACGAGGTGACAATATCCATGAGTTGACGACCGATTTGAGCGTCTCCCGGCTTCTCACCGTCCTTATTGACACCTTCCACGTAGCTGCAAATTTTGGGGATTTTAGGGATTTTAAGGGGGTTCGGCTGAAAAACAGCTCAGAATTTTTGAAAA</canonical>
            <polymorphic>ATTTTTGAGCCATTTTGCAGCTTAAAAACCGAATTTTCCGTATTTTAGGAGTAAAATTTGAGATTTTTCACTAAAAATTCATATTGATGAAAATGGAGAACGTTTAGACTTTTTTGGGACAATTTTTAACCAATTTTTGACAATTTTTGATGGGGTTTTCGGAGAATTTCCAAGTCAAAATTAGGCCTTTTCAGATTGAAATTTGATGATTCTTGATCCAAAATGTATCATTTTTGGTGTCAAAATTCACATTTTTAGGCTCAAAATTAGCATTTCAAGTCGAAAATCAACATTTTCAGACCTGAAATTGTCATTTTTTGCTTCAAAATCGATATTTTCAGACCTGAAATTGGCATTTTTGTTTCAAAATCAACATTTTCTGACCTGAAACTGTCATTTTTAGAATCAAAAATTGCTCATTTTTGAGCTCGAAAATGAGCAATTTTAATACCTTAAATTGACATATTTTCGGGCTCAAAATCAACATTTTCAGCCCAAARATCATCGAAATTTCAGACCCAAAAACTATCATTTTTTGGCCTCAAATTTCACGAAAAATATGCCATTTTTTAGCTAAAAATCAGCATTTTCAGACCTAAAATTGATATTTTTCTGCTCAAAATGTATCATTTTTTAGAGTAATATTTGACATTTTTATGGCGGAAAATAGGAACTTTCGGTGCTAAATATGCCATTTTCGGGCTCAAAATCAACATTTTCAGCTCAAAAAACTATCATTTTTGCCTTCAAATTTGACGATTATCCCTTAATTTTTCGAAATCTGAAACTTACACGAAGCGTGTTCTTGACGAGCGCATCAAGCTTGTCCGGTTGCATGTTGTTCGACGACGAGGTGACAATATCCATGAGTTGACGACCGATTTGAGCGTCTCCCGGCTTCTCACCGTCCTTATTGACACCTTCCACGTAGCTGCAAATTTTGGGGATTTTAGGGATTTTAAGGGGGTTCGGCTGAAAAACAGCTCAGAATTTTTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAATTTTAATACCTTAAATTGACA</pcr_primer_p1>
		<pcr_primer_p2>ATTTAGCACCGAAAGTTCCTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCAATTTTAATACCTTAAATTGACATATTTTCGGGCTCAAAATCAACATTTTCAGCCCAAAAATCATCGAAATTTCAGACCCAAAAACTATCATTTTTTGGCCTCAAATTTCACGAAAAATATGCCATTTTTTAGCTAAAAATCAGCATTTTCAGACCTAAAATTGATATTTTTCTGCTCAAAATGTATCATTTTTTAGAGTAATATTTGACATTTTTATGGCGGAAAATAGGAACTTTCGGTGCTAAAT</canonical_amplicon>
		<polymorphic_amplicon>GCAATTTTAATACCTTAAATTGACATATTTTCGGGCTCAAAATCAACATTTTCAGCCCAAARATCATCGAAATTTCAGACCCAAAAACTATCATTTTTTGGCCTCAAATTTCACGAAAAATATGCCATTTTTTAGCTAAAAATCAGCATTTTCAGACCTAAAATTGATATTTTTCTGCTCAAAATGTATCATTTTTTAGAGTAATATTTGACATTTTTATGGCGGAAAATAGGAACTTTCGGTGCTAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36662</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>101247</contig_pos>
        <strand>+</strand>
        <context>CTAAAATTGA[A/T]ATTTTTCTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATATGCCATTTTTTAGCTAAAAATCAGCATTTTCAGACCTAAAATTGA</left_flank>
        <right_flank>ATTTTTCTGCTCAAAATGTATCATTTTTTAGAGTAATATTTGACATTTTT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTTTTTTGGGACAATTTTTAACCAATTTTTGACAATTTTTGATGGGGTTTTCGGAGAATTTCCAAGTCAAAATTAGGCCTTTTCAGATTGAAATTTGATGATTCTTGATCCAAAATGTATCATTTTTGGTGTCAAAATTCACATTTTTAGGCTCAAAATTAGCATTTCAAGTCGAAAATCAACATTTTCAGACCTGAAATTGTCATTTTTTGCTTCAAAATCGATATTTTCAGACCTGAAATTGGCATTTTTGTTTCAAAATCAACATTTTCTGACCTGAAACTGTCATTTTTAGAATCAAAAATTGCTCATTTTTGAGCTCGAAAATGAGCAATTTTAATACCTTAAATTGACATATTTTCGGGCTCAAAATCAACATTTTCAGCCCAAAAATCATCGAAATTTCAGACCCAAAAACTATCATTTTTTGGCCTCAAATTTCACGAAAAATATGCCATTTTTTAGCTAAAAATCAGCATTTTCAGACCTAAAATTGATATTTTTCTGCTCAAAATGTATCATTTTTTAGAGTAATATTTGACATTTTTATGGCGGAAAATAGGAACTTTCGGTGCTAAATATGCCATTTTCGGGCTCAAAATCAACATTTTCAGCTCAAAAAACTATCATTTTTGCCTTCAAATTTGACGATTATCCCTTAATTTTTCGAAATCTGAAACTTACACGAAGCGTGTTCTTGACGAGCGCATCAAGCTTGTCCGGTTGCATGTTGTTCGACGACGAGGTGACAATATCCATGAGTTGACGACCGATTTGAGCGTCTCCCGGCTTCTCACCGTCCTTATTGACACCTTCCACGTAGCTGCAAATTTTGGGGATTTTAGGGATTTTAAGGGGGTTCGGCTGAAAAACAGCTCAGAATTTTTGAAAATCCTTCAAAAATCAAGTTTCTAGCTTATTAAGGAGTCAAGATTGAGCCGATCCAAGTTCCGAAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAACAT</canonical>
            <polymorphic>GACTTTTTTGGGACAATTTTTAACCAATTTTTGACAATTTTTGATGGGGTTTTCGGAGAATTTCCAAGTCAAAATTAGGCCTTTTCAGATTGAAATTTGATGATTCTTGATCCAAAATGTATCATTTTTGGTGTCAAAATTCACATTTTTAGGCTCAAAATTAGCATTTCAAGTCGAAAATCAACATTTTCAGACCTGAAATTGTCATTTTTTGCTTCAAAATCGATATTTTCAGACCTGAAATTGGCATTTTTGTTTCAAAATCAACATTTTCTGACCTGAAACTGTCATTTTTAGAATCAAAAATTGCTCATTTTTGAGCTCGAAAATGAGCAATTTTAATACCTTAAATTGACATATTTTCGGGCTCAAAATCAACATTTTCAGCCCAAAAATCATCGAAATTTCAGACCCAAAAACTATCATTTTTTGGCCTCAAATTTCACGAAAAATATGCCATTTTTTAGCTAAAAATCAGCATTTTCAGACCTAAAATTGAWATTTTTCTGCTCAAAATGTATCATTTTTTAGAGTAATATTTGACATTTTTATGGCGGAAAATAGGAACTTTCGGTGCTAAATATGCCATTTTCGGGCTCAAAATCAACATTTTCAGCTCAAAAAACTATCATTTTTGCCTTCAAATTTGACGATTATCCCTTAATTTTTCGAAATCTGAAACTTACACGAAGCGTGTTCTTGACGAGCGCATCAAGCTTGTCCGGTTGCATGTTGTTCGACGACGAGGTGACAATATCCATGAGTTGACGACCGATTTGAGCGTCTCCCGGCTTCTCACCGTCCTTATTGACACCTTCCACGTAGCTGCAAATTTTGGGGATTTTAGGGATTTTAAGGGGGTTCGGCTGAAAAACAGCTCAGAATTTTTGAAAATCCTTCAAAAATCAAGTTTCTAGCTTATTAAGGAGTCAAGATTGAGCCGATCCAAGTTCCGAAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATTTCAGACCCAAAAACTAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTGAAGGCAAAAATGATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAATTTCAGACCCAAAAACTATCATTTTTTGGCCTCAAATTTCACGAAAAATATGCCATTTTTTAGCTAAAAATCAGCATTTTCAGACCTAAAATTGATATTTTTCTGCTCAAAATGTATCATTTTTTAGAGTAATATTTGACATTTTTATGGCGGAAAATAGGAACTTTCGGTGCTAAATATGCCATTTTCGGGCTCAAAATCAACATTTTCAGCTCAAAAAACTATCATTTTTGCCTTCAAATTT</canonical_amplicon>
		<polymorphic_amplicon>GAAATTTCAGACCCAAAAACTATCATTTTTTGGCCTCAAATTTCACGAAAAATATGCCATTTTTTAGCTAAAAATCAGCATTTTCAGACCTAAAATTGAWATTTTTCTGCTCAAAATGTATCATTTTTTAGAGTAATATTTGACATTTTTATGGCGGAAAATAGGAACTTTCGGTGCTAAATATGCCATTTTCGGGCTCAAAATCAACATTTTCAGCTCAAAAAACTATCATTTTTGCCTTCAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36663</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>101354</contig_pos>
        <strand></strand>
        <context>CTCAAAATCA[A/T]CATTTTCAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAATAGGAACTTTCGGTGCTAAATATGCCATTTTCGGGCTCAAAATCA</left_flank>
        <right_flank>CATTTTCAGCTCAAAAAACTATCATTTTTGCCTTCAAATTTGACGATTAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATCCAAAATGTATCATTTTTGGTGTCAAAATTCACATTTTTAGGCTCAAAATTAGCATTTCAAGTCGAAAATCAACATTTTCAGACCTGAAATTGTCATTTTTTGCTTCAAAATCGATATTTTCAGACCTGAAATTGGCATTTTTGTTTCAAAATCAACATTTTCTGACCTGAAACTGTCATTTTTAGAATCAAAAATTGCTCATTTTTGAGCTCGAAAATGAGCAATTTTAATACCTTAAATTGACATATTTTCGGGCTCAAAATCAACATTTTCAGCCCAAAAATCATCGAAATTTCAGACCCAAAAACTATCATTTTTTGGCCTCAAATTTCACGAAAAATATGCCATTTTTTAGCTAAAAATCAGCATTTTCAGACCTAAAATTGATATTTTTCTGCTCAAAATGTATCATTTTTTAGAGTAATATTTGACATTTTTATGGCGGAAAATAGGAACTTTCGGTGCTAAATATGCCATTTTCGGGCTCAAAATCAACATTTTCAGCTCAAAAAACTATCATTTTTGCCTTCAAATTTGACGATTATCCCTTAATTTTTCGAAATCTGAAACTTACACGAAGCGTGTTCTTGACGAGCGCATCAAGCTTGTCCGGTTGCATGTTGTTCGACGACGAGGTGACAATATCCATGAGTTGACGACCGATTTGAGCGTCTCCCGGCTTCTCACCGTCCTTATTGACACCTTCCACGTAGCTGCAAATTTTGGGGATTTTAGGGATTTTAAGGGGGTTCGGCTGAAAAACAGCTCAGAATTTTTGAAAATCCTTCAAAAATCAAGTTTCTAGCTTATTAAGGAGTCAAGATTGAGCCGATCCAAGTTCCGAAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAACATTTGAATTTACTGTCAAATTGTTCACCATGACATTCTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>TGATCCAAAATGTATCATTTTTGGTGTCAAAATTCACATTTTTAGGCTCAAAATTAGCATTTCAAGTCGAAAATCAACATTTTCAGACCTGAAATTGTCATTTTTTGCTTCAAAATCGATATTTTCAGACCTGAAATTGGCATTTTTGTTTCAAAATCAACATTTTCTGACCTGAAACTGTCATTTTTAGAATCAAAAATTGCTCATTTTTGAGCTCGAAAATGAGCAATTTTAATACCTTAAATTGACATATTTTCGGGCTCAAAATCAWCATTTTCAGCCCAAAAATCATCGAAATTTCAGACCCAAAAACTATCATTTTTTGGCCTCAAATTTCACGAAAAATATGCCATTTTTTAGCTAAAAATCAGCATTTTCAGACCTAAAATTGATATTTTTCTGCTCAAAATGTATCATTTTTTAGAGTAATATTTGACATTTTTATGGCGGAAAATAGGAACTTTCGGTGCTAAATATGCCATTTTCGGGCTCAAAATCAACATTTTCAGCTCAAAAAACTATCATTTTTGCCTTCAAATTTGACGATTATCCCTTAATTTTTCGAAATCTGAAACTTACACGAAGCGTGTTCTTGACGAGCGCATCAAGCTTGTCCGGTTGCATGTTGTTCGACGACGAGGTGACAATATCCATGAGTTGACGACCGATTTGAGCGTCTCCCGGCTTCTCACCGTCCTTATTGACACCTTCCACGTAGCTGCAAATTTTGGGGATTTTAGGGATTTTAAGGGGGTTCGGCTGAAAAACAGCTCAGAATTTTTGAAAATCCTTCAAAAATCAAGTTTCTAGCTTATTAAGGAGTCAAGATTGAGCCGATCCAAGTTCCGAAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAACATTTGAATTTACTGTCAAATTGTTCACCATGACATTCTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAGACCCAAAAACTATCATT</pcr_primer_p1>
		<pcr_primer_p2>AAATTAAGGGATAATCGTCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>TTCAGACCCAAAAACTATCATTTTTTGGCCTCAAATTTCACGAAAAATATGCCATTTTTTAGCTAAAAATCAGCATTTTCAGACCTAAAATTGATATTTTTCTGCTCAAAATGTATCATTTTTTAGAGTAATATTTGACATTTTTATGGCGGAAAATAGGAACTTTCGGTGCTAAATATGCCATTTTCGGGCTCAAAATCAACATTTTCAGCTCAAAAAACTATCATTTTTGCCTTCAAATTTGACGATTATCCCTTAATTT</canonical_amplicon>
		<polymorphic_amplicon>TTCAGACCCAAAAACTATCATTTTTTGGCCTCAAATTTCACGAAAAATATGCCATTTTTTAGCTAAAAATCAGCATTTTCAGACCTAAAATTGATATTTTTCTGCTCAAAATGTATCATTTTTTAGAGTAATATTTGACATTTTTATGGCGGAAAATAGGAACTTTCGGTGCTAAATATGCCATTTTCGGGCTCAAAATCAACATTTTCAGCTCAAAAAACTATCATTTTTGCCTTCAAATTTGACGATTATCCCTTAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36664</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>101365</contig_pos>
        <strand>+</strand>
        <context>CATTTTCAGC[C/T]CAAAAAACTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTCGGTGCTAAATATGCCATTTTCGGGCTCAAAATCAACATTTTCAGC</left_flank>
        <right_flank>CAAAAAACTATCATTTTTGCCTTCAAATTTGACGATTATCCCTTAATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATCATTTTTGGTGTCAAAATTCACATTTTTAGGCTCAAAATTAGCATTTCAAGTCGAAAATCAACATTTTCAGACCTGAAATTGTCATTTTTTGCTTCAAAATCGATATTTTCAGACCTGAAATTGGCATTTTTGTTTCAAAATCAACATTTTCTGACCTGAAACTGTCATTTTTAGAATCAAAAATTGCTCATTTTTGAGCTCGAAAATGAGCAATTTTAATACCTTAAATTGACATATTTTCGGGCTCAAAATCAACATTTTCAGCCCAAAAATCATCGAAATTTCAGACCCAAAAACTATCATTTTTTGGCCTCAAATTTCACGAAAAATATGCCATTTTTTAGCTAAAAATCAGCATTTTCAGACCTAAAATTGATATTTTTCTGCTCAAAATGTATCATTTTTTAGAGTAATATTTGACATTTTTATGGCGGAAAATAGGAACTTTCGGTGCTAAATATGCCATTTTCGGGCTCAAAATCAACATTTTCAGCTCAAAAAACTATCATTTTTGCCTTCAAATTTGACGATTATCCCTTAATTTTTCGAAATCTGAAACTTACACGAAGCGTGTTCTTGACGAGCGCATCAAGCTTGTCCGGTTGCATGTTGTTCGACGACGAGGTGACAATATCCATGAGTTGACGACCGATTTGAGCGTCTCCCGGCTTCTCACCGTCCTTATTGACACCTTCCACGTAGCTGCAAATTTTGGGGATTTTAGGGATTTTAAGGGGGTTCGGCTGAAAAACAGCTCAGAATTTTTGAAAATCCTTCAAAAATCAAGTTTCTAGCTTATTAAGGAGTCAAGATTGAGCCGATCCAAGTTCCGAAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAACATTTGAATTTACTGTCAAATTGTTCACCATGACATTCTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>GTATCATTTTTGGTGTCAAAATTCACATTTTTAGGCTCAAAATTAGCATTTCAAGTCGAAAATCAACATTTTCAGACCTGAAATTGTCATTTTTTGCTTCAAAATCGATATTTTCAGACCTGAAATTGGCATTTTTGTTTCAAAATCAACATTTTCTGACCTGAAACTGTCATTTTTAGAATCAAAAATTGCTCATTTTTGAGCTCGAAAATGAGCAATTTTAATACCTTAAATTGACATATTTTCGGGCTCAAAATCAACATTTTCAGCCCAAAAATCATCGAAATTTCAGACCCAAAAACTATCATTTTTTGGCCTCAAATTTCACGAAAAATATGCCATTTTTTAGCTAAAAATCAGCATTTTCAGACCTAAAATTGATATTTTTCTGCTCAAAATGTATCATTTTTTAGAGTAATATTTGACATTTTTATGGCGGAAAATAGGAACTTTCGGTGCTAAATATGCCATTTTCGGGCTCAAAATCAACATTTTCAGCYCAAAAAACTATCATTTTTGCCTTCAAATTTGACGATTATCCCTTAATTTTTCGAAATCTGAAACTTACACGAAGCGTGTTCTTGACGAGCGCATCAAGCTTGTCCGGTTGCATGTTGTTCGACGACGAGGTGACAATATCCATGAGTTGACGACCGATTTGAGCGTCTCCCGGCTTCTCACCGTCCTTATTGACACCTTCCACGTAGCTGCAAATTTTGGGGATTTTAGGGATTTTAAGGGGGTTCGGCTGAAAAACAGCTCAGAATTTTTGAAAATCCTTCAAAAATCAAGTTTCTAGCTTATTAAGGAGTCAAGATTGAGCCGATCCAAGTTCCGAAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAACATTTGAATTTACTGTCAAATTGTTCACCATGACATTCTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>203 201 149 146 109 100 52 40</canonical_bands>
                <polymorphic_bands>249 203 201 146 109 52 40</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>168 159 129 100 75 46 46 41 40 35 34 34 23 20 20 19 11</canonical_bands>
                <polymorphic_bands>168 159 129 120 75 46 46 41 40 35 34 34 23 20 19 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAAATCAGCATTTTCAGACC</pcr_primer_p1>
		<pcr_primer_p2>AAGAACACGCTTCGTGTAAG</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>TAAAAATCAGCATTTTCAGACCTAAAATTGATATTTTTCTGCTCAAAATGTATCATTTTTTAGAGTAATATTTGACATTTTTATGGCGGAAAATAGGAACTTTCGGTGCTAAATATGCCATTTTCGGGCTCAAAATCAACATTTTCAGCTCAAAAAACTATCATTTTTGCCTTCAAATTTGACGATTATCCCTTAATTTTTCGAAATCTGAAACTTACACGAAGCGTGTTCTT</canonical_amplicon>
		<polymorphic_amplicon>TAAAAATCAGCATTTTCAGACCTAAAATTGATATTTTTCTGCTCAAAATGTATCATTTTTTAGAGTAATATTTGACATTTTTATGGCGGAAAATAGGAACTTTCGGTGCTAAATATGCCATTTTCGGGCTCAAAATCAACATTTTCAGCYCAAAAAACTATCATTTTTGCCTTCAAATTTGACGATTATCCCTTAATTTTTCGAAATCTGAAACTTACACGAAGCGTGTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36665</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>101548</contig_pos>
        <strand>+</strand>
        <context>GCTTCTCACC[A/G]TCCTTATTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAATATCCATGAGTTGACGACCGATTTGAGCGTCTCCCGGCTTCTCACC</left_flank>
        <right_flank>TCCTTATTGACACCTTCCACGTAGCTGCAAATTTTGGGGATTTTAGGGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATTGCTCATTTTTGAGCTCGAAAATGAGCAATTTTAATACCTTAAATTGACATATTTTCGGGCTCAAAATCAACATTTTCAGCCCAAAAATCATCGAAATTTCAGACCCAAAAACTATCATTTTTTGGCCTCAAATTTCACGAAAAATATGCCATTTTTTAGCTAAAAATCAGCATTTTCAGACCTAAAATTGATATTTTTCTGCTCAAAATGTATCATTTTTTAGAGTAATATTTGACATTTTTATGGCGGAAAATAGGAACTTTCGGTGCTAAATATGCCATTTTCGGGCTCAAAATCAACATTTTCAGCTCAAAAAACTATCATTTTTGCCTTCAAATTTGACGATTATCCCTTAATTTTTCGAAATCTGAAACTTACACGAAGCGTGTTCTTGACGAGCGCATCAAGCTTGTCCGGTTGCATGTTGTTCGACGACGAGGTGACAATATCCATGAGTTGACGACCGATTTGAGCGTCTCCCGGCTTCTCACCGTCCTTATTGACACCTTCCACGTAGCTGCAAATTTTGGGGATTTTAGGGATTTTAAGGGGGTTCGGCTGAAAAACAGCTCAGAATTTTTGAAAATCCTTCAAAAATCAAGTTTCTAGCTTATTAAGGAGTCAAGATTGAGCCGATCCAAGTTCCGAAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAACATTTGAATTTACTGTCAAATTGTTCACCATGACATTCTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>AAAAATTGCTCATTTTTGAGCTCGAAAATGAGCAATTTTAATACCTTAAATTGACATATTTTCGGGCTCAAAATCAACATTTTCAGCCCAAAAATCATCGAAATTTCAGACCCAAAAACTATCATTTTTTGGCCTCAAATTTCACGAAAAATATGCCATTTTTTAGCTAAAAATCAGCATTTTCAGACCTAAAATTGATATTTTTCTGCTCAAAATGTATCATTTTTTAGAGTAATATTTGACATTTTTATGGCGGAAAATAGGAACTTTCGGTGCTAAATATGCCATTTTCGGGCTCAAAATCAACATTTTCAGCTCAAAAAACTATCATTTTTGCCTTCAAATTTGACGATTATCCCTTAATTTTTCGAAATCTGAAACTTACACGAAGCGTGTTCTTGACGAGCGCATCAAGCTTGTCCGGTTGCATGTTGTTCGACGACGAGGTGACAATATCCATGAGTTGACGACCGATTTGAGCGTCTCCCGGCTTCTCACCRTCCTTATTGACACCTTCCACGTAGCTGCAAATTTTGGGGATTTTAGGGATTTTAAGGGGGTTCGGCTGAAAAACAGCTCAGAATTTTTGAAAATCCTTCAAAAATCAAGTTTCTAGCTTATTAAGGAGTCAAGATTGAGCCGATCCAAGTTCCGAAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAACATTTGAATTTACTGTCAAATTGTTCACCATGACATTCTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>499 290 211</canonical_bands>
                <polymorphic_bands>710 290</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTTGACGATTATCCCTTAAT</pcr_primer_p1>
		<pcr_primer_p2>CAAAAATTCTGAGCTGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAATTTGACGATTATCCCTTAATTTTTCGAAATCTGAAACTTACACGAAGCGTGTTCTTGACGAGCGCATCAAGCTTGTCCGGTTGCATGTTGTTCGACGACGAGGTGACAATATCCATGAGTTGACGACCGATTTGAGCGTCTCCCGGCTTCTCACCGTCCTTATTGACACCTTCCACGTAGCTGCAAATTTTGGGGATTTTAGGGATTTTAAGGGGGTTCGGCTGAAAAACAGCTCAGAATTTTTG</canonical_amplicon>
		<polymorphic_amplicon>AAATTTGACGATTATCCCTTAATTTTTCGAAATCTGAAACTTACACGAAGCGTGTTCTTGACGAGCGCATCAAGCTTGTCCGGTTGCATGTTGTTCGACGACGAGGTGACAATATCCATGAGTTGACGACCGATTTGAGCGTCTCCCGGCTTCTCACCRTCCTTATTGACACCTTCCACGTAGCTGCAAATTTTGGGGATTTTAGGGATTTTAAGGGGGTTCGGCTGAAAAACAGCTCAGAATTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36666</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>101580</contig_pos>
        <strand>+</strand>
        <context>TAGCTGCAAA[C/T]TTTGGGGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCTCCCGGCTTCTCACCGTCCTTATTGACACCTTCCACGTAGCTGCAAA</left_flank>
        <right_flank>TTTGGGGATTTTAGGGATTTTAAGGGGGTTCGGCTGAAAAACAGCTCAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATTTTAATACCTTAAATTGACATATTTTCGGGCTCAAAATCAACATTTTCAGCCCAAAAATCATCGAAATTTCAGACCCAAAAACTATCATTTTTTGGCCTCAAATTTCACGAAAAATATGCCATTTTTTAGCTAAAAATCAGCATTTTCAGACCTAAAATTGATATTTTTCTGCTCAAAATGTATCATTTTTTAGAGTAATATTTGACATTTTTATGGCGGAAAATAGGAACTTTCGGTGCTAAATATGCCATTTTCGGGCTCAAAATCAACATTTTCAGCTCAAAAAACTATCATTTTTGCCTTCAAATTTGACGATTATCCCTTAATTTTTCGAAATCTGAAACTTACACGAAGCGTGTTCTTGACGAGCGCATCAAGCTTGTCCGGTTGCATGTTGTTCGACGACGAGGTGACAATATCCATGAGTTGACGACCGATTTGAGCGTCTCCCGGCTTCTCACCGTCCTTATTGACACCTTCCACGTAGCTGCAAATTTTGGGGATTTTAGGGATTTTAAGGGGGTTCGGCTGAAAAACAGCTCAGAATTTTTGAAAATCCTTCAAAAATCAAGTTTCTAGCTTATTAAGGAGTCAAGATTGAGCCGATCCAAGTTCCGAAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAACATTTGAATTTACTGTCAAATTGTTCACCATGACATTCTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>CAATTTTAATACCTTAAATTGACATATTTTCGGGCTCAAAATCAACATTTTCAGCCCAAAAATCATCGAAATTTCAGACCCAAAAACTATCATTTTTTGGCCTCAAATTTCACGAAAAATATGCCATTTTTTAGCTAAAAATCAGCATTTTCAGACCTAAAATTGATATTTTTCTGCTCAAAATGTATCATTTTTTAGAGTAATATTTGACATTTTTATGGCGGAAAATAGGAACTTTCGGTGCTAAATATGCCATTTTCGGGCTCAAAATCAACATTTTCAGCTCAAAAAACTATCATTTTTGCCTTCAAATTTGACGATTATCCCTTAATTTTTCGAAATCTGAAACTTACACGAAGCGTGTTCTTGACGAGCGCATCAAGCTTGTCCGGTTGCATGTTGTTCGACGACGAGGTGACAATATCCATGAGTTGACGACCGATTTGAGCGTCTCCCGGCTTCTCACCGTCCTTATTGACACCTTCCACGTAGCTGCAAAYTTTGGGGATTTTAGGGATTTTAAGGGGGTTCGGCTGAAAAACAGCTCAGAATTTTTGAAAATCCTTCAAAAATCAAGTTTCTAGCTTATTAAGGAGTCAAGATTGAGCCGATCCAAGTTCCGAAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAACATTTGAATTTACTGTCAAATTGTTCACCATGACATTCTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>330 205 187 121 69 52 36</canonical_bands>
                <polymorphic_bands>330 239 205 121 69 36</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>318 168 150 121 55 53 52 36 19 15 12 1</canonical_bands>
                <polymorphic_bands>318 220 150 121 55 53 36 19 15 12 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTTGACGATTATCCCTTAAT</pcr_primer_p1>
		<pcr_primer_p2>CAAAAATTCTGAGCTGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAATTTGACGATTATCCCTTAATTTTTCGAAATCTGAAACTTACACGAAGCGTGTTCTTGACGAGCGCATCAAGCTTGTCCGGTTGCATGTTGTTCGACGACGAGGTGACAATATCCATGAGTTGACGACCGATTTGAGCGTCTCCCGGCTTCTCACCGTCCTTATTGACACCTTCCACGTAGCTGCAAATTTTGGGGATTTTAGGGATTTTAAGGGGGTTCGGCTGAAAAACAGCTCAGAATTTTTG</canonical_amplicon>
		<polymorphic_amplicon>AAATTTGACGATTATCCCTTAATTTTTCGAAATCTGAAACTTACACGAAGCGTGTTCTTGACGAGCGCATCAAGCTTGTCCGGTTGCATGTTGTTCGACGACGAGGTGACAATATCCATGAGTTGACGACCGATTTGAGCGTCTCCCGGCTTCTCACCGTCCTTATTGACACCTTCCACGTAGCTGCAAAYTTTGGGGATTTTAGGGATTTTAAGGGGGTTCGGCTGAAAAACAGCTCAGAATTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36667</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>101612</contig_pos>
        <strand>+</strand>
        <context>AAGGGGGTTC[C/T]GCTGAAAAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTCCACGTAGCTGCAAATTTTGGGGATTTTAGGGATTTTAAGGGGGTTC</left_flank>
        <right_flank>GCTGAAAAACAGCTCAGAATTTTTGAAAATCCTTCAAAAATCAAGTTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCTCAAAATCAACATTTTCAGCCCAAAAATCATCGAAATTTCAGACCCAAAAACTATCATTTTTTGGCCTCAAATTTCACGAAAAATATGCCATTTTTTAGCTAAAAATCAGCATTTTCAGACCTAAAATTGATATTTTTCTGCTCAAAATGTATCATTTTTTAGAGTAATATTTGACATTTTTATGGCGGAAAATAGGAACTTTCGGTGCTAAATATGCCATTTTCGGGCTCAAAATCAACATTTTCAGCTCAAAAAACTATCATTTTTGCCTTCAAATTTGACGATTATCCCTTAATTTTTCGAAATCTGAAACTTACACGAAGCGTGTTCTTGACGAGCGCATCAAGCTTGTCCGGTTGCATGTTGTTCGACGACGAGGTGACAATATCCATGAGTTGACGACCGATTTGAGCGTCTCCCGGCTTCTCACCGTCCTTATTGACACCTTCCACGTAGCTGCAAATTTTGGGGATTTTAGGGATTTTAAGGGGGTTCGGCTGAAAAACAGCTCAGAATTTTTGAAAATCCTTCAAAAATCAAGTTTCTAGCTTATTAAGGAGTCAAGATTGAGCCGATCCAAGTTCCGAAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAACATTTGAATTTACTGTCAAATTGTTCACCATGACATTCTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCGTTCTATTTTCAG</canonical>
            <polymorphic>GGCTCAAAATCAACATTTTCAGCCCAAAAATCATCGAAATTTCAGACCCAAAAACTATCATTTTTTGGCCTCAAATTTCACGAAAAATATGCCATTTTTTAGCTAAAAATCAGCATTTTCAGACCTAAAATTGATATTTTTCTGCTCAAAATGTATCATTTTTTAGAGTAATATTTGACATTTTTATGGCGGAAAATAGGAACTTTCGGTGCTAAATATGCCATTTTCGGGCTCAAAATCAACATTTTCAGCTCAAAAAACTATCATTTTTGCCTTCAAATTTGACGATTATCCCTTAATTTTTCGAAATCTGAAACTTACACGAAGCGTGTTCTTGACGAGCGCATCAAGCTTGTCCGGTTGCATGTTGTTCGACGACGAGGTGACAATATCCATGAGTTGACGACCGATTTGAGCGTCTCCCGGCTTCTCACCGTCCTTATTGACACCTTCCACGTAGCTGCAAATTTTGGGGATTTTAGGGATTTTAAGGGGGTTCYGCTGAAAAACAGCTCAGAATTTTTGAAAATCCTTCAAAAATCAAGTTTCTAGCTTATTAAGGAGTCAAGATTGAGCCGATCCAAGTTCCGAAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAACATTTGAATTTACTGTCAAATTGTTCACCATGACATTCTACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCGTTCTATTTTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>406 129 100 75 46 41 40 34 34 23 20 20 19 11 2</canonical_bands>
                <polymorphic_bands>406 129 100 75 52 46 40 34 34 23 20 20 19 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTATTGACACCTTCCACGTA</pcr_primer_p1>
		<pcr_primer_p2>TAGAATGTCATGGTGAACAATTT</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>CTTATTGACACCTTCCACGTAGCTGCAAATTTTGGGGATTTTAGGGATTTTAAGGGGGTTCGGCTGAAAAACAGCTCAGAATTTTTGAAAATCCTTCAAAAATCAAGTTTCTAGCTTATTAAGGAGTCAAGATTGAGCCGATCCAAGTTCCGAAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAACATTTGAATTTACTGTCAAATTGTTCACCATGACATTCTA</canonical_amplicon>
		<polymorphic_amplicon>CTTATTGACACCTTCCACGTAGCTGCAAATTTTGGGGATTTTAGGGATTTTAAGGGGGTTCYGCTGAAAAACAGCTCAGAATTTTTGAAAATCCTTCAAAAATCAAGTTTCTAGCTTATTAAGGAGTCAAGATTGAGCCGATCCAAGTTCCGAAGGCTAGAGACGCCAGACGACGAGACACACTGCGTCTCTAACATTTGAATTTACTGTCAAATTGTTCACCATGACATTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36668</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>121306</contig_pos>
        <strand>+</strand>
        <context>GTGTCGAGAA[A/G]TCGTTCCACG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAA</left_flank>
        <right_flank>TCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCCATTTTAACATGGTGGCCTAACTTTTTTAAAATGAAATTTCTAGGCCACCAATGTTTTTGGCCTAGAAATGATATTTCAGACTAGTTTCAGACTTTGTAGGTAGTTCAAAGTCTGAACAATGGTCAAAAATCGAGCAAAAACGACTAAAATCGCAAAAAAAATTTTTGATGGCCTAGAAATCCGGAAAACTCGGCCACCATCAAATGTCGCCAATTAGGGCCTGTTTAGAGCTTTCTAGGCTGGTTTTCGACTGTTTTTTGGGGTTTTTGGACCATTTTCAGCCTATTTAGACTCATTTTTCATGTTTTCAGGGCCGAATTCCCACCTTTTCCAGGCGTTTCTCCTCCTCCTTCTCCTCCTCCATTCTCTCCATTCTCCTCATTTTTCTGCCGTTTAAACTGCTCAAACTTGGCCATCCACTCGGCCGCCCATTGTCCATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGATTCTAGGCCATTCTGACTTGGTGGCCTAGGATCCCAAATTATAATATTTCTAGGCCACCGCTTTTAAAAAACGTTTTCAGGACGTTTTCGAGCAATTTTAGGCCCTTTTTAAAGACTTTTGGGAAAAAAAAACTTGGTGGCCTAGAAATCTCAAAATTTGGGTTTCTAGGCCACCACTCCTAAAACACGATTTTAGATGACTTTTGATAAGAAAATCAAGGATTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGTTTCTAGGCCATTCT</canonical>
            <polymorphic>AAGCCATTTTAACATGGTGGCCTAACTTTTTTAAAATGAAATTTCTAGGCCACCAATGTTTTTGGCCTAGAAATGATATTTCAGACTAGTTTCAGACTTTGTAGGTAGTTCAAAGTCTGAACAATGGTCAAAAATCGAGCAAAAACGACTAAAATCGCAAAAAAAATTTTTGATGGCCTAGAAATCCGGAAAACTCGGCCACCATCAAATGTCGCCAATTAGGGCCTGTTTAGAGCTTTCTAGGCTGGTTTTCGACTGTTTTTTGGGGTTTTTGGACCATTTTCAGCCTATTTAGACTCATTTTTCATGTTTTCAGGGCCGAATTCCCACCTTTTCCAGGCGTTTCTCCTCCTCCTTCTCCTCCTCCATTCTCTCCATTCTCCTCATTTTTCTGCCGTTTAAACTGCTCAAACTTGGCCATCCACTCGGCCGCCCATTGTCCATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAARTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGATTCTAGGCCATTCTGACTTGGTGGCCTAGGATCCCAAATTATAATATTTCTAGGCCACCGCTTTTAAAAAACGTTTTCAGGACGTTTTCGAGCAATTTTAGGCCCTTTTTAAAGACTTTTGGGAAAAAAAAACTTGGTGGCCTAGAAATCTCAAAATTTGGGTTTCTAGGCCACCACTCCTAAAACACGATTTTAGATGACTTTTGATAAGAAAATCAAGGATTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGTTTCTAGGCCATTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTCCGTCTAGTCCTCCT</pcr_primer_p1>
		<pcr_primer_p2>CTCGAATTCGTGAGTTTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAG</canonical_amplicon>
		<polymorphic_amplicon>CATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAARTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36669</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>121464</contig_pos>
        <strand>+</strand>
        <context>ACCYARAAAT[C/G]GTTTTKGYGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAAT</left_flank>
        <right_flank>GTTTTGGTGGCCTAGAAAACTCACGAATTCGAGATTCTAGGCCATTCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAAATTTTTGATGGCCTAGAAATCCGGAAAACTCGGCCACCATCAAATGTCGCCAATTAGGGCCTGTTTAGAGCTTTCTAGGCTGGTTTTCGACTGTTTTTTGGGGTTTTTGGACCATTTTCAGCCTATTTAGACTCATTTTTCATGTTTTCAGGGCCGAATTCCCACCTTTTCCAGGCGTTTCTCCTCCTCCTTCTCCTCCTCCATTCTCTCCATTCTCCTCATTTTTCTGCCGTTTAAACTGCTCAAACTTGGCCATCCACTCGGCCGCCCATTGTCCATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGATTCTAGGCCATTCTGACTTGGTGGCCTAGGATCCCAAATTATAATATTTCTAGGCCACCGCTTTTAAAAAACGTTTTCAGGACGTTTTCGAGCAATTTTAGGCCCTTTTTAAAGACTTTTGGGAAAAAAAAACTTGGTGGCCTAGAAATCTCAAAATTTGGGTTTCTAGGCCACCACTCCTAAAACACGATTTTAGATGACTTTTGATAAGAAAATCAAGGATTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGTTTCTAGGCCATTCTGACTTGATGGCCTAGGATCCCAAATTATGATATTTCTAGGCCACCAAGTCCTAAAAGCGATTTTAAAACGTTTTTGAGCAATATTAGGTCATTTTTGAAGCATTTCTGGCTCAAATATTTGGTGGCCTAGAAAATTCAAAATTCGGGTTTCTAGGCCA</canonical>
            <polymorphic>AAAAAAAATTTTTGATGGCCTAGAAATCCGGAAAACTCGGCCACCATCAAATGTCGCCAATTAGGGCCTGTTTAGAGCTTTCTAGGCTGGTTTTCGACTGTTTTTTGGGGTTTTTGGACCATTTTCAGCCTATTTAGACTCATTTTTCATGTTTTCAGGGCCGAATTCCCACCTTTTCCAGGCGTTTCTCCTCCTCCTTCTCCTCCTCCATTCTCTCCATTCTCCTCATTTTTCTGCCGTTTAAACTGCTCAAACTTGGCCATCCACTCGGCCGCCCATTGTCCATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATSGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGATTCTAGGCCATTCTGACTTGGTGGCCTAGGATCCCAAATTATAATATTTCTAGGCCACCGCTTTTAAAAAACGTTTTCAGGACGTTTTCGAGCAATTTTAGGCCCTTTTTAAAGACTTTTGGGAAAAAAAAACTTGGTGGCCTAGAAATCTCAAAATTTGGGTTTCTAGGCCACCACTCCTAAAACACGATTTTAGATGACTTTTGATAAGAAAATCAAGGATTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGTTTCTAGGCCATTCTGACTTGATGGCCTAGGATCCCAAATTATGATATTTCTAGGCCACCAAGTCCTAAAAGCGATTTTAAAACGTTTTTGAGCAATATTAGGTCATTTTTGAAGCATTTCTGGCTCAAATATTTGGTGGCCTAGAAAATTCAAAATTCGGGTTTCTAGGCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTACCACTGGAAACAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TAACCCCAGATTCCTTCATT</pcr_primer_p2>
		<pcr_amplicon_size>647</pcr_amplicon_size>
		<canonical_amplicon>CGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>CGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATSGTTTTGGTGGCCTAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36670</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>121470</contig_pos>
        <strand>+</strand>
        <context>AAATSGTTTT[G/T]GYGGCMTAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTT</left_flank>
        <right_flank>GTGGCCTAGAAAACTCACGAATTCGAGATTCTAGGCCATTCTGACTTGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTTGATGGCCTAGAAATCCGGAAAACTCGGCCACCATCAAATGTCGCCAATTAGGGCCTGTTTAGAGCTTTCTAGGCTGGTTTTCGACTGTTTTTTGGGGTTTTTGGACCATTTTCAGCCTATTTAGACTCATTTTTCATGTTTTCAGGGCCGAATTCCCACCTTTTCCAGGCGTTTCTCCTCCTCCTTCTCCTCCTCCATTCTCTCCATTCTCCTCATTTTTCTGCCGTTTAAACTGCTCAAACTTGGCCATCCACTCGGCCGCCCATTGTCCATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGATTCTAGGCCATTCTGACTTGGTGGCCTAGGATCCCAAATTATAATATTTCTAGGCCACCGCTTTTAAAAAACGTTTTCAGGACGTTTTCGAGCAATTTTAGGCCCTTTTTAAAGACTTTTGGGAAAAAAAAACTTGGTGGCCTAGAAATCTCAAAATTTGGGTTTCTAGGCCACCACTCCTAAAACACGATTTTAGATGACTTTTGATAAGAAAATCAAGGATTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGTTTCTAGGCCATTCTGACTTGATGGCCTAGGATCCCAAATTATGATATTTCTAGGCCACCAAGTCCTAAAAGCGATTTTAAAACGTTTTTGAGCAATATTAGGTCATTTTTGAAGCATTTCTGGCTCAAATATTTGGTGGCCTAGAAAATTCAAAATTCGGGTTTCTAGGCCATCGCTC</canonical>
            <polymorphic>AATTTTTGATGGCCTAGAAATCCGGAAAACTCGGCCACCATCAAATGTCGCCAATTAGGGCCTGTTTAGAGCTTTCTAGGCTGGTTTTCGACTGTTTTTTGGGGTTTTTGGACCATTTTCAGCCTATTTAGACTCATTTTTCATGTTTTCAGGGCCGAATTCCCACCTTTTCCAGGCGTTTCTCCTCCTCCTTCTCCTCCTCCATTCTCTCCATTCTCCTCATTTTTCTGCCGTTTAAACTGCTCAAACTTGGCCATCCACTCGGCCGCCCATTGTCCATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTKGTGGCCTAGAAAACTCACGAATTCGAGATTCTAGGCCATTCTGACTTGGTGGCCTAGGATCCCAAATTATAATATTTCTAGGCCACCGCTTTTAAAAAACGTTTTCAGGACGTTTTCGAGCAATTTTAGGCCCTTTTTAAAGACTTTTGGGAAAAAAAAACTTGGTGGCCTAGAAATCTCAAAATTTGGGTTTCTAGGCCACCACTCCTAAAACACGATTTTAGATGACTTTTGATAAGAAAATCAAGGATTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGTTTCTAGGCCATTCTGACTTGATGGCCTAGGATCCCAAATTATGATATTTCTAGGCCACCAAGTCCTAAAAGCGATTTTAAAACGTTTTTGAGCAATATTAGGTCATTTTTGAAGCATTTCTGGCTCAAATATTTGGTGGCCTAGAAAATTCAAAATTCGGGTTTCTAGGCCATCGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTACCACTGGAAACAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TAACCCCAGATTCCTTCATT</pcr_primer_p2>
		<pcr_amplicon_size>647</pcr_amplicon_size>
		<canonical_amplicon>CGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACG</canonical_amplicon>
		<polymorphic_amplicon>CGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTKGTGGCCTAGAAAACTCACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36671</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>121472</contig_pos>
        <strand>+</strand>
        <context>ATSGTTTTKG[C/T]GGCMTAGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGG</left_flank>
        <right_flank>GGCCTAGAAAACTCACGAATTCGAGATTCTAGGCCATTCTGACTTGGTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTGATGGCCTAGAAATCCGGAAAACTCGGCCACCATCAAATGTCGCCAATTAGGGCCTGTTTAGAGCTTTCTAGGCTGGTTTTCGACTGTTTTTTGGGGTTTTTGGACCATTTTCAGCCTATTTAGACTCATTTTTCATGTTTTCAGGGCCGAATTCCCACCTTTTCCAGGCGTTTCTCCTCCTCCTTCTCCTCCTCCATTCTCTCCATTCTCCTCATTTTTCTGCCGTTTAAACTGCTCAAACTTGGCCATCCACTCGGCCGCCCATTGTCCATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGATTCTAGGCCATTCTGACTTGGTGGCCTAGGATCCCAAATTATAATATTTCTAGGCCACCGCTTTTAAAAAACGTTTTCAGGACGTTTTCGAGCAATTTTAGGCCCTTTTTAAAGACTTTTGGGAAAAAAAAACTTGGTGGCCTAGAAATCTCAAAATTTGGGTTTCTAGGCCACCACTCCTAAAACACGATTTTAGATGACTTTTGATAAGAAAATCAAGGATTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGTTTCTAGGCCATTCTGACTTGATGGCCTAGGATCCCAAATTATGATATTTCTAGGCCACCAAGTCCTAAAAGCGATTTTAAAACGTTTTTGAGCAATATTAGGTCATTTTTGAAGCATTTCTGGCTCAAATATTTGGTGGCCTAGAAAATTCAAAATTCGGGTTTCTAGGCCATCGCTCCT</canonical>
            <polymorphic>TTTTTGATGGCCTAGAAATCCGGAAAACTCGGCCACCATCAAATGTCGCCAATTAGGGCCTGTTTAGAGCTTTCTAGGCTGGTTTTCGACTGTTTTTTGGGGTTTTTGGACCATTTTCAGCCTATTTAGACTCATTTTTCATGTTTTCAGGGCCGAATTCCCACCTTTTCCAGGCGTTTCTCCTCCTCCTTCTCCTCCTCCATTCTCTCCATTCTCCTCATTTTTCTGCCGTTTAAACTGCTCAAACTTGGCCATCCACTCGGCCGCCCATTGTCCATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGYGGCCTAGAAAACTCACGAATTCGAGATTCTAGGCCATTCTGACTTGGTGGCCTAGGATCCCAAATTATAATATTTCTAGGCCACCGCTTTTAAAAAACGTTTTCAGGACGTTTTCGAGCAATTTTAGGCCCTTTTTAAAGACTTTTGGGAAAAAAAAACTTGGTGGCCTAGAAATCTCAAAATTTGGGTTTCTAGGCCACCACTCCTAAAACACGATTTTAGATGACTTTTGATAAGAAAATCAAGGATTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGTTTCTAGGCCATTCTGACTTGATGGCCTAGGATCCCAAATTATGATATTTCTAGGCCACCAAGTCCTAAAAGCGATTTTAAAACGTTTTTGAGCAATATTAGGTCATTTTTGAAGCATTTCTGGCTCAAATATTTGGTGGCCTAGAAAATTCAAAATTCGGGTTTCTAGGCCATCGCTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>251 241 100 86 85 31 31 30 30 30 30 17 17 11 10</canonical_bands>
                <polymorphic_bands>282 241 100 86 85 31 30 30 30 30 17 17 11 10</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>128 95 90 82 82 81 68 68 42 37 35 34 34 34 32 16 14 14 11 3</canonical_bands>
                <polymorphic_bands>128 104 95 82 82 81 68 68 42 37 35 34 34 34 32 16 14 11 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTACCACTGGAAACAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TAACCCCAGATTCCTTCATT</pcr_primer_p2>
		<pcr_amplicon_size>647</pcr_amplicon_size>
		<canonical_amplicon>CGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAA</canonical_amplicon>
		<polymorphic_amplicon>CGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGYGGCCTAGAAAACTCACGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36672</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>121476</contig_pos>
        <strand>+</strand>
        <context>TTTTKGYGGC[A/C]TAGAAAACTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGC</left_flank>
        <right_flank>TAGAAAACTCACGAATTCGAGATTCTAGGCCATTCTGACTTGGTGGCCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATGGCCTAGAAATCCGGAAAACTCGGCCACCATCAAATGTCGCCAATTAGGGCCTGTTTAGAGCTTTCTAGGCTGGTTTTCGACTGTTTTTTGGGGTTTTTGGACCATTTTCAGCCTATTTAGACTCATTTTTCATGTTTTCAGGGCCGAATTCCCACCTTTTCCAGGCGTTTCTCCTCCTCCTTCTCCTCCTCCATTCTCTCCATTCTCCTCATTTTTCTGCCGTTTAAACTGCTCAAACTTGGCCATCCACTCGGCCGCCCATTGTCCATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGATTCTAGGCCATTCTGACTTGGTGGCCTAGGATCCCAAATTATAATATTTCTAGGCCACCGCTTTTAAAAAACGTTTTCAGGACGTTTTCGAGCAATTTTAGGCCCTTTTTAAAGACTTTTGGGAAAAAAAAACTTGGTGGCCTAGAAATCTCAAAATTTGGGTTTCTAGGCCACCACTCCTAAAACACGATTTTAGATGACTTTTGATAAGAAAATCAAGGATTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGTTTCTAGGCCATTCTGACTTGATGGCCTAGGATCCCAAATTATGATATTTCTAGGCCACCAAGTCCTAAAAGCGATTTTAAAACGTTTTTGAGCAATATTAGGTCATTTTTGAAGCATTTCTGGCTCAAATATTTGGTGGCCTAGAAAATTCAAAATTCGGGTTTCTAGGCCATCGCTCCTAAAA</canonical>
            <polymorphic>TGATGGCCTAGAAATCCGGAAAACTCGGCCACCATCAAATGTCGCCAATTAGGGCCTGTTTAGAGCTTTCTAGGCTGGTTTTCGACTGTTTTTTGGGGTTTTTGGACCATTTTCAGCCTATTTAGACTCATTTTTCATGTTTTCAGGGCCGAATTCCCACCTTTTCCAGGCGTTTCTCCTCCTCCTTCTCCTCCTCCATTCTCTCCATTCTCCTCATTTTTCTGCCGTTTAAACTGCTCAAACTTGGCCATCCACTCGGCCGCCCATTGTCCATTTCCGTCTAGTCCTCCTCCGAATCCCTCCTTGATGCCCTTGATTCGTGTCGAGAACTCGTTCCACGTCCCGTTGGCGTCGAACCATGCGGGAAGTGTCAGGTCCGGTAGATTCGATTTCCATTCTTCGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCMTAGAAAACTCACGAATTCGAGATTCTAGGCCATTCTGACTTGGTGGCCTAGGATCCCAAATTATAATATTTCTAGGCCACCGCTTTTAAAAAACGTTTTCAGGACGTTTTCGAGCAATTTTAGGCCCTTTTTAAAGACTTTTGGGAAAAAAAAACTTGGTGGCCTAGAAATCTCAAAATTTGGGTTTCTAGGCCACCACTCCTAAAACACGATTTTAGATGACTTTTGATAAGAAAATCAAGGATTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCGAGTTTCTAGGCCATTCTGACTTGATGGCCTAGGATCCCAAATTATGATATTTCTAGGCCACCAAGTCCTAAAAGCGATTTTAAAACGTTTTTGAGCAATATTAGGTCATTTTTGAAGCATTTCTGGCTCAAATATTTGGTGGCCTAGAAAATTCAAAATTCGGGTTTCTAGGCCATCGCTCCTAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>211 199 92 91 86 62 25 25 24 24 24 24 23 23 20 20 19 8</canonical_bands>
                <polymorphic_bands>211 199 92 91 86 62 45 25 24 24 24 24 23 23 20 19 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>177 100 99 94 85 62 48 38 31 31 30 30 30 30 26 22 17 17 15 12 6</canonical_bands>
                <polymorphic_bands>177 100 99 94 93 85 48 38 31 30 30 30 30 26 22 17 17 15 12 6</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>177 100 99 69 62 48 42 38 32 31 31 30 30 30 30 26 22 17 17 16 15 12 11 9 6</canonical_bands>
                <polymorphic_bands>177 100 99 93 69 48 42 38 32 31 30 30 30 30 26 22 17 17 16 15 12 11 9 6</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>251 241 100 86 85 31 31 30 30 30 30 17 17 15 6</canonical_bands>
                <polymorphic_bands>282 241 100 86 85 31 30 30 30 30 17 17 15 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTACCACTGGAAACAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TAACCCCAGATTCCTTCATT</pcr_primer_p2>
		<pcr_amplicon_size>647</pcr_amplicon_size>
		<canonical_amplicon>CGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCCTAGAAAACTCACGAATTCG</canonical_amplicon>
		<polymorphic_amplicon>CGTACCACTGGAAACAAAATTCGGGGGTTTAGGGGGCCGAAAATGAAGGGTTTCAGGTTGCAAATCATGAAAAATTGACCTAGAAATCGTTTTGGTGGCMTAGAAAACTCACGAATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36673</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>123402</contig_pos>
        <strand>+</strand>
        <context>CGAAAAATTG[C/T]AAAAATCAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCTAGAGTGAAAATGAGTCCTAATTCGTGATTTTTGATCGAAAAATTG</left_flank>
        <right_flank>AAAAATCAGCTCAAAATACCCTATTCAGTGCATTTTTCGTTTGGTGGCCT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACCTGGAAAAGCGTTTTTTTAGCATCAAATTGACTAAAAATCACTTAAAATAGCTCAGAAGCCATCTAAAACCTTCGAGTTCATGATTTTCACTTGGTGTCCTAGAAATTACCCAAAAAAACTCGGCCATCAAAACCAAATTTCGACTCTAGGGTGAAAATCGGTCCTAAATCCTGATTTTCGATCAAAAAATTGCAAAAATTCCGTTCAAAATGCTCTATTCAGAGCGGTTTTCACTTGGTGGCCTAGAAATCCCAAAAACTCGGCCACTGGTCTCAAAATGGGGTTTTAGGGGTAAAGGACCACTGGGAAACCGTTTTTCAGCCTAAAAATGTCATAAAATCACTTATAACAGCTCTAAGTGCACCAAAAAGCGTTAAATCTATGATTGGATAACCGTGGCCTAGAAATCCCCCCAAAAAAACTCGGCCATCAAAATCAAAAATAGATTCTAGAGTGAAAATGAGTCCTAATTCGTGATTTTTGATCGAAAAATTGTAAAAATCAGCTCAAAATACCCTATTCAGTGCATTTTTCGTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACCATCAAAAATTGGCCTGGAACGTGCAAAAAAGTTCCAATTTTTTGCAGAAAAGAGCATAAAAAGGGGGAGAAGAGGGTCGGGGGGAAGACATCAAAGATTAGACGGCAGGAGGGGGGAAATTTTATTATTTTCTAGTGTTCGATGAGCAATCGGAGGGCACGGGGAGGACGAAACAAAAAACCATGGCATCATCACTGATAAGGATTTTGATGATTGAAAAAATTTAAAAAAAATGTGGCCAAGAAAATGCGAAAAAACTAGGCCTTCCGAGCCCATCCTAAATTCGTGGCCTAGAAATCCAAAAAACTAGGCCACGGGTGACAAAAACCATGTTTTCTGGGTGTTTTTCCGCCTAGATTCCTGATTTCTGGTGTCCAGGAACCCTATTTTTCGCCAAAAATGATCAGAAAACGGTCAAAAATCGCA</canonical>
            <polymorphic>CACCTGGAAAAGCGTTTTTTTAGCATCAAATTGACTAAAAATCACTTAAAATAGCTCAGAAGCCATCTAAAACCTTCGAGTTCATGATTTTCACTTGGTGTCCTAGAAATTACCCAAAAAAACTCGGCCATCAAAACCAAATTTCGACTCTAGGGTGAAAATCGGTCCTAAATCCTGATTTTCGATCAAAAAATTGCAAAAATTCCGTTCAAAATGCTCTATTCAGAGCGGTTTTCACTTGGTGGCCTAGAAATCCCAAAAACTCGGCCACTGGTCTCAAAATGGGGTTTTAGGGGTAAAGGACCACTGGGAAACCGTTTTTCAGCCTAAAAATGTCATAAAATCACTTATAACAGCTCTAAGTGCACCAAAAAGCGTTAAATCTATGATTGGATAACCGTGGCCTAGAAATCCCCCCAAAAAAACTCGGCCATCAAAATCAAAAATAGATTCTAGAGTGAAAATGAGTCCTAATTCGTGATTTTTGATCGAAAAATTGYAAAAATCAGCTCAAAATACCCTATTCAGTGCATTTTTCGTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACCATCAAAAATTGGCCTGGAACGTGCAAAAAAGTTCCAATTTTTTGCAGAAAAGAGCATAAAAAGGGGGAGAAGAGGGTCGGGGGGAAGACATCAAAGATTAGACGGCAGGAGGGGGGAAATTTTATTATTTTCTAGTGTTCGATGAGCAATCGGAGGGCACGGGGAGGACGAAACAAAAAACCATGGCATCATCACTGATAAGGATTTTGATGATTGAAAAAATTTAAAAAAAATGTGGCCAAGAAAATGCGAAAAAACTAGGCCTTCCGAGCCCATCCTAAATTCGTGGCCTAGAAATCCAAAAAACTAGGCCACGGGTGACAAAAACCATGTTTTCTGGGTGTTTTTCCGCCTAGATTCCTGATTTCTGGTGTCCAGGAACCCTATTTTTCGCCAAAAATGATCAGAAAACGGTCAAAAATCGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATCAAAATCAAAAATAGATTC</pcr_primer_p1>
		<pcr_primer_p2>CCGTCTAATCTTTGATGTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCATCAAAATCAAAAATAGATTCTAGAGTGAAAATGAGTCCTAATTCGTGATTTTTGATCGAAAAATTGTAAAAATCAGCTCAAAATACCCTATTCAGTGCATTTTTCGTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACCATCAAAAATTGGCCTGGAACGTGCAAAAAAGTTCCAATTTTTTGCAGAAAAGAGCATAAAAAGGGGGAGAAGAGGGTCGGGGGGAAGACATCAAAGATTAGACGG</canonical_amplicon>
		<polymorphic_amplicon>CCATCAAAATCAAAAATAGATTCTAGAGTGAAAATGAGTCCTAATTCGTGATTTTTGATCGAAAAATTGYAAAAATCAGCTCAAAATACCCTATTCAGTGCATTTTTCGTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACCATCAAAAATTGGCCTGGAACGTGCAAAAAAGTTCCAATTTTTTGCAGAAAAGAGCATAAAAAGGGGGAGAAGAGGGTCGGGGGGAAGACATCAAAGATTAGACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36674</snp_id>
        <super_contig>c011201737.Contig1</super_contig>
        <contig_pos>123459</contig_pos>
        <strand></strand>
        <context>gcctagaaat[T/C]ccaaaaactc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAGCTCAAAATACCCTATTCAGTGCATTTTTCGTTTGGTGGCCTAGAAAT</left_flank>
        <right_flank>CCAAAAACTCGGCCACCATCAAAAATTGGCCTGGAACGTGCAAAAAAGTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAGCCATCTAAAACCTTCGAGTTCATGATTTTCACTTGGTGTCCTAGAAATTACCCAAAAAAACTCGGCCATCAAAACCAAATTTCGACTCTAGGGTGAAAATCGGTCCTAAATCCTGATTTTCGATCAAAAAATTGCAAAAATTCCGTTCAAAATGCTCTATTCAGAGCGGTTTTCACTTGGTGGCCTAGAAATCCCAAAAACTCGGCCACTGGTCTCAAAATGGGGTTTTAGGGGTAAAGGACCACTGGGAAACCGTTTTTCAGCCTAAAAATGTCATAAAATCACTTATAACAGCTCTAAGTGCACCAAAAAGCGTTAAATCTATGATTGGATAACCGTGGCCTAGAAATCCCCCCAAAAAAACTCGGCCATCAAAATCAAAAATAGATTCTAGAGTGAAAATGAGTCCTAATTCGTGATTTTTGATCGAAAAATTGTAAAAATCAGCTCAAAATACCCTATTCAGTGCATTTTTCGTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACCATCAAAAATTGGCCTGGAACGTGCAAAAAAGTTCCAATTTTTTGCAGAAAAGAGCATAAAAAGGGGGAGAAGAGGGTCGGGGGGAAGACATCAAAGATTAGACGGCAGGAGGGGGGAAATTTTATTATTTTCTAGTGTTCGATGAGCAATCGGAGGGCACGGGGAGGACGAAACAAAAAACCATGGCATCATCACTGATAAGGATTTTGATGATTGAAAAAATTTAAAAAAAATGTGGCCAAGAAAATGCGAAAAAACTAGGCCTTCCGAGCCCATCCTAAATTCGTGGCCTAGAAATCCAAAAAACTAGGCCACGGGTGACAAAAACCATGTTTTCTGGGTGTTTTTCCGCCTAGATTCCTGATTTCTGGTGTCCAGGAACCCTATTTTTCGCCAAAAATGATCAGAAAACGGTCAAAAATCGCAGAATAAATAAATAATTATAGGGGTCCAACATTTCCCGATTTTCGAGCTCCAAACATA</canonical>
            <polymorphic>AGAAGCCATCTAAAACCTTCGAGTTCATGATTTTCACTTGGTGTCCTAGAAATTACCCAAAAAAACTCGGCCATCAAAACCAAATTTCGACTCTAGGGTGAAAATCGGTCCTAAATCCTGATTTTCGATCAAAAAATTGCAAAAATTCCGTTCAAAATGCTCTATTCAGAGCGGTTTTCACTTGGTGGCCTAGAAATCCCAAAAACTCGGCCACTGGTCTCAAAATGGGGTTTTAGGGGTAAAGGACCACTGGGAAACCGTTTTTCAGCCTAAAAATGTCATAAAATCACTTATAACAGCTCTAAGTGCACCAAAAAGCGTTAAATCTATGATTGGATAACCGTGGCCTAGAAATCCCCCCAAAAAAACTCGGCCATCAAAATCAAAAATAGATTCTAGAGTGAAAATGAGTCCTAATTCGTGATTTTTGATCGAAAAATTGTAAAAATCAGCTCAAAATACCCTATTCAGTGCATTTTTCGTTTGGTGGCCTAGAAATYCCAAAAACTCGGCCACCATCAAAAATTGGCCTGGAACGTGCAAAAAAGTTCCAATTTTTTGCAGAAAAGAGCATAAAAAGGGGGAGAAGAGGGTCGGGGGGAAGACATCAAAGATTAGACGGCAGGAGGGGGGAAATTTTATTATTTTCTAGTGTTCGATGAGCAATCGGAGGGCACGGGGAGGACGAAACAAAAAACCATGGCATCATCACTGATAAGGATTTTGATGATTGAAAAAATTTAAAAAAAATGTGGCCAAGAAAATGCGAAAAAACTAGGCCTTCCGAGCCCATCCTAAATTCGTGGCCTAGAAATCCAAAAAACTAGGCCACGGGTGACAAAAACCATGTTTTCTGGGTGTTTTTCCGCCTAGATTCCTGATTTCTGGTGTCCAGGAACCCTATTTTTCGCCAAAAATGATCAGAAAACGGTCAAAAATCGCAGAATAAATAAATAATTATAGGGGTCCAACATTTCCCGATTTTCGAGCTCCAAACATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>353 203 138 103 82 61 60</canonical_bands>
                <polymorphic_bands>491 203 103 82 61 60</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>272 158 103 82 60 59 52 50 45 32 29 27 22 9</canonical_bands>
                <polymorphic_bands>272 158 103 86 82 60 52 50 45 32 29 22 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATCAAAATCAAAAATAGATTC</pcr_primer_p1>
		<pcr_primer_p2>CCGTCTAATCTTTGATGTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCATCAAAATCAAAAATAGATTCTAGAGTGAAAATGAGTCCTAATTCGTGATTTTTGATCGAAAAATTGTAAAAATCAGCTCAAAATACCCTATTCAGTGCATTTTTCGTTTGGTGGCCTAGAAATTCCAAAAACTCGGCCACCATCAAAAATTGGCCTGGAACGTGCAAAAAAGTTCCAATTTTTTGCAGAAAAGAGCATAAAAAGGGGGAGAAGAGGGTCGGGGGGAAGACATCAAAGATTAGACGG</canonical_amplicon>
		<polymorphic_amplicon>CCATCAAAATCAAAAATAGATTCTAGAGTGAAAATGAGTCCTAATTCGTGATTTTTGATCGAAAAATTGTAAAAATCAGCTCAAAATACCCTATTCAGTGCATTTTTCGTTTGGTGGCCTAGAAATYCCAAAAACTCGGCCACCATCAAAAATTGGCCTGGAACGTGCAAAAAAGTTCCAATTTTTTGCAGAAAAGAGCATAAAAAGGGGGAGAAGAGGGTCGGGGGGAAGACATCAAAGATTAGACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36676</snp_id>
        <super_contig>c011300982.Contig1</super_contig>
        <contig_pos>2077</contig_pos>
        <strand></strand>
        <context>TTTTATTTCA[A/G]ACATTTGCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCAATCAGAAACTTTTTTATGTTTTTTTGGGTTCCTGCACTTTTATTTCA</left_flank>
        <right_flank>ACATTTGCAAATAGTGTATTCCACTGGGCATGTACAATATACTATTTGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATGACACAAATTGAAACTTTCCCAATTTTTTTCTAGATTAAAGATCAAGATTGATGAAATATTCAGACAACCTGACGCACANNNNNNNNNNAGTTTCTTCGGGTTATCGTATATCCCGCAAATGGCTGCTGGCGCGTTGTCAGCTTTGTGTGAGTTCATTTGTTTGTCTGTAAGTCCATCTTCTTGTCTTTCCTAGGTTTTGCCAGCTCATACGTCTTTTTATTTGAGAGCCGAAGTAATGCTATCACAGATAATCGTTTTCGGATGACAAAGAAATGCACTCGAGTTTTATACCATACTTTAGTATTATTTTTGAATCTCACTGTATTATTATTCATGTTCTTCACGACGACAGAAGAGTCACAAAAATTGGAAGCTCTGAAAATCGATCCGTGCCCGACTAAAGAATTTTTTAGGTCTCCTGTTGTATTTTTTATTTCCGATTCAGCAATCAGAAACTTTTTTATGTTTTTTTGGGTTCCTGCACTTTTATTTCAAACATTTGCAAATAGTGTATTCCACTGGGCATGTACAATATACTATTTGTTCGTAGCTCCTCCTTCAAGATCTACTTCTGCTGAAACTCGCCGAGCACAACGGCATTTTTTAATTGGAACCATGATCCAAACTTCAATTCCGGTATTAACTCTTATGATACCTCCACTTGTCTTGATATTTTTATTTTCCAAGGGTTATTACAACCAGGGCCTTATGAATCTGGGTATGATATTTTATGGGCTAAATGGATTGGTTGAAAGTTTGGCTATCCTTTCGGTATATCGTCCTTATCGGAACGCTGTAAAAGACATTTTGAACTTTAGAAAATCAAAAGGTAAGGAAACATATTTGAATGTAATTATTATAAGTTTTTAGAACCCAAAGTCCAAACTATTCCAGTTCGAGAAGTTTGTGGGAATTCTGGTTTTGGAAGGACACATCTTCGAATTTGAGAAATGTTTTCGAATTTCTTGAAATAGTTTTTCCGAATGTTTTTAAAT</canonical>
            <polymorphic>ATATGACACAAATTGAAACTTTCCCAATTTTTTTCTAGATTAAAGATCAAGATTGATGAAATATTCAGACAACCTGACGCACANNNNNNNNNNAGTTTCTTCGGGTTATCGTATATCCCGCAAATGGCTGCTGGCGCGTTGTCAGCTTTGTGTGAGTTCATTTGTTTGTCTGTAAGTCCATCTTCTTGTCTTTCCTAGGTTTTGCCAGCTCATACGTCTTTTTATTTGAGAGCCGAAGTAATGCTATCACAGATAATCGTTTTCGGATGACAAAGAAATGCACTCGAGTTTTATACCATACTTTAGTATTATTTTTGAATCTCACTGTATTATTATTCATGTTCTTCACGACGACAGAAGAGTCACAAAAATTGGAAGCTCTGAAAATCGATCCGTGCCCGACTAAAGAATTTTTTAGGTCTCCTGTTGTATTTTTTATTTCCGATTCAGCAATCAGAAACTTTTTTATGTTTTTTTGGGTTCCTGCACTTTTATTTCARACATTTGCAAATAGTGTATTCCACTGGGCATGTACAATATACTATTTGTTCGTAGCTCCTCCTTCAAGATCTACTTCTGCTGAAACTCGCCGAGCACAACGGCATTTTTTAATTGGAACCATGATCCAAACTTCAATTCCGGTATTAACTCTTATGATACCTCCACTTGTCTTGATATTTTTATTTTCCAAGGGTTATTACAACCAGGGCCTTATGAATCTGGGTATGATATTTTATGGGCTAAATGGATTGGTTGAAAGTTTGGCTATCCTTTCGGTATATCGTCCTTATCGGAACGCTGTAAAAGACATTTTGAACTTTAGAAAATCAAAAGGTAAGGAAACATATTTGAATGTAATTATTATAAGTTTTTAGAACCCAAAGTCCAAACTATTCCAGTTCGAGAAGTTTGTGGGAATTCTGGTTTTGGAAGGACACATCTTCGAATTTGAGAAATGTTTTCGAATTTCTTGAAATAGTTTTTCCGAATGTTTTTAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTATTATTCATGTTCTTCACGAC</pcr_primer_p1>
		<pcr_primer_p2>AGAAGTAGATCTTGAAGGAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTATTATTCATGTTCTTCACGACGACAGAAGAGTCACAAAAATTGGAAGCTCTGAAAATCGATCCGTGCCCGACTAAAGAATTTTTTAGGTCTCCTGTTGTATTTTTTATTTCCGATTCAGCAATCAGAAACTTTTTTATGTTTTTTTGGGTTCCTGCACTTTTATTTCAAACATTTGCAAATAGTGTATTCCACTGGGCATGTACAATATACTATTTGTTCGTAGCTCCTCCTTCAAGATCTACTTCT</canonical_amplicon>
		<polymorphic_amplicon>ATTATTATTCATGTTCTTCACGACGACAGAAGAGTCACAAAAATTGGAAGCTCTGAAAATCGATCCGTGCCCGACTAAAGAATTTTTTAGGTCTCCTGTTGTATTTTTTATTTCCGATTCAGCAATCAGAAACTTTTTTATGTTTTTTTGGGTTCCTGCACTTTTATTTCARACATTTGCAAATAGTGTATTCCACTGGGCATGTACAATATACTATTTGTTCGTAGCTCCTCCTTCAAGATCTACTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36677</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>11861</contig_pos>
        <strand>+</strand>
        <context>CTGAAAATGA[C/G]AAACTTTTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCCGAGTGTAGTCTGCTTCACGCATTCACGCGAGCAAGCACTGAAAATGA</left_flank>
        <right_flank>AAACTTTTGGAAAAATAAAAATAAATAAAAACTTACAACCAAGCCACTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACATTGGTAAATAAGTATGCCACTGAGAATCAATGCAATCAGAAGGAGGAATTATTATAACAACCTGGATTTAGAATCTGGCCTTCAAGTGCACGGTGACCTTTTCTGGAGACGTAGTGGTACACCCTTGAAAGTGTAGTTGATCCTCTGTTTCGGGTCCCGCGACGATTGACCATTTACGGAGCACGTGTGCCAATGCCATCTTTGCTTCCGACATCCCAAGTCTCATTCCCACACATTTTCGCTTGCCGGCACCAAACGCAAGAGATGCAAGTGGATGACGTTGCTCATCAAACCACCTGGAATAGCGTTTTTTTTCAAAAAATTCAGTAATTTAAAAATACCTTTCGGGAACAAATAGTTCTGTACCATCTCCCCAAATCTCTTTGGAATAATGGATGGCTTTGACATCTGCTTCAATTCGGACACCTTCATCGATGAGGTGAGGTCCGAGTGTAGTCTGCTTCACGCATTCACGCGAGCAAGCACTGAAAATGAGAAACTTTTGGAAAAATAAAAATAAATAAAAACTTACAACCAAGCCACTGGAGAGAGTCTCAATGATTCCTTTATAACTGCATCCAAATATTGAAGTTGGCCTATTTGTTCATATGTGATGTTGTCTAAATTGCTAACTTCATCAATCTCTTCCTGGGCGATCTTCATTTTTTCGGGATTCAACGCCAGAAGATGTGCTGCGCATCCGAGAGCATTGGCTGTAGTATCGAATCCTGCTAATAGGAGCACGAAGCAAGAACCAATGACGTCTTCCACCACGCTTGCTTGATTGTCTTTCCGCTTTCGTTGTAGCTTTGCTCAATTTCCGAGTAGTGATCCAGGAACAGATCAATAAAGTCATTCTGCTGAATTTCTTCCCCTTGAGCAGCTTGCTTTTCCTGAAAAAAAAACATCGAAAATTGCAAAATTATCGCAACTCACTCTCTGCTTCATTCGTTCCATCACCGACTTGGCGCAATACATAAATAGCTCCGCTATTTT</canonical>
            <polymorphic>TACATTGGTAAATAAGTATGCCACTGAGAATCAATGCAATCAGAAGGAGGAATTATTATAACAACCTGGATTTAGAATCTGGCCTTCAAGTGCACGGTGACCTTTTCTGGAGACGTAGTGGTACACCCTTGAAAGTGTAGTTGATCCTCTGTTTCGGGTCCCGCGACGATTGACCATTTACGGAGCACGTGTGCCAATGCCATCTTTGCTTCCGACATCCCAAGTCTCATTCCCACACATTTTCGCTTGCCGGCACCAAACGCAAGAGATGCAAGTGGATGACGTTGCTCATCAAACCACCTGGAATAGCGTTTTTTTTCAAAAAATTCAGTAATTTAAAAATACCTTTCGGGAACAAATAGTTCTGTACCATCTCCCCAAATCTCTTTGGAATAATGGATGGCTTTGACATCTGCTTCAATTCGGACACCTTCATCGATGAGGTGAGGTCCGAGTGTAGTCTGCTTCACGCATTCACGCGAGCAAGCACTGAAAATGASAAACTTTTGGAAAAATAAAAATAAATAAAAACTTACAACCAAGCCACTGGAGAGAGTCTCAATGATTCCTTTATAACTGCATCCAAATATTGAAGTTGGCCTATTTGTTCATATGTGATGTTGTCTAAATTGCTAACTTCATCAATCTCTTCCTGGGCGATCTTCATTTTTTCGGGATTCAACGCCAGAAGATGTGCTGCGCATCCGAGAGCATTGGCTGTAGTATCGAATCCTGCTAATAGGAGCACGAAGCAAGAACCAATGACGTCTTCCACCACGCTTGCTTGATTGTCTTTCCGCTTTCGTTGTAGCTTTGCTCAATTTCCGAGTAGTGATCCAGGAACAGATCAATAAAGTCATTCTGCTGAATTTCTTCCCCTTGAGCAGCTTGCTTTTCCTGAAAAAAAAACATCGAAAATTGCAAAATTATCGCAACTCACTCTCTGCTTCATTCGTTCCATCACCGACTTGGCGCAATACATAAATAGCTCCGCTATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAAAAATACCTTTCGGGAAC</pcr_primer_p1>
		<pcr_primer_p2>ATGCAGTTATAAAGGAATCATTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTAAAAATACCTTTCGGGAACAAATAGTTCTGTACCATCTCCCCAAATCTCTTTGGAATAATGGATGGCTTTGACATCTGCTTCAATTCGGACACCTTCATCGATGAGGTGAGGTCCGAGTGTAGTCTGCTTCACGCATTCACGCGAGCAAGCACTGAAAATGAGAAACTTTTGGAAAAATAAAAATAAATAAAAACTTACAACCAAGCCACTGGAGAGAGTCTCAATGATTCCTTTATAACTGCAT</canonical_amplicon>
		<polymorphic_amplicon>TTAAAAATACCTTTCGGGAACAAATAGTTCTGTACCATCTCCCCAAATCTCTTTGGAATAATGGATGGCTTTGACATCTGCTTCAATTCGGACACCTTCATCGATGAGGTGAGGTCCGAGTGTAGTCTGCTTCACGCATTCACGCGAGCAAGCACTGAAAATGASAAACTTTTGGAAAAATAAAAATAAATAAAAACTTACAACCAAGCCACTGGAGAGAGTCTCAATGATTCCTTTATAACTGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36678</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>11956</contig_pos>
        <strand>+</strand>
        <context>AAATATTGAA[A/G]TTGGCCTATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACTGGAGAGAGTCTCAATGATTCCTTTATAACTGCATCCAAATATTGAA</left_flank>
        <right_flank>TTGGCCTATTTGTTCATATGTGATGTTGTCTAAATTGCTAACTTCATCAA</right_flank>
        <qual_score>130</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGACCTTTTCTGGAGACGTAGTGGTACACCCTTGAAAGTGTAGTTGATCCTCTGTTTCGGGTCCCGCGACGATTGACCATTTACGGAGCACGTGTGCCAATGCCATCTTTGCTTCCGACATCCCAAGTCTCATTCCCACACATTTTCGCTTGCCGGCACCAAACGCAAGAGATGCAAGTGGATGACGTTGCTCATCAAACCACCTGGAATAGCGTTTTTTTTCAAAAAATTCAGTAATTTAAAAATACCTTTCGGGAACAAATAGTTCTGTACCATCTCCCCAAATCTCTTTGGAATAATGGATGGCTTTGACATCTGCTTCAATTCGGACACCTTCATCGATGAGGTGAGGTCCGAGTGTAGTCTGCTTCACGCATTCACGCGAGCAAGCACTGAAAATGAGAAACTTTTGGAAAAATAAAAATAAATAAAAACTTACAACCAAGCCACTGGAGAGAGTCTCAATGATTCCTTTATAACTGCATCCAAATATTGAAGTTGGCCTATTTGTTCATATGTGATGTTGTCTAAATTGCTAACTTCATCAATCTCTTCCTGGGCGATCTTCATTTTTTCGGGATTCAACGCCAGAAGATGTGCTGCGCATCCGAGAGCATTGGCTGTAGTATCGAATCCTGCTAATAGGAGCACGAAGCAAGAACCAATGACGTCTTCCACCACGCTTGCTTGATTGTCTTTCCGCTTTCGTTGTAGCTTTGCTCAATTTCCGAGTAGTGATCCAGGAACAGATCAATAAAGTCATTCTGCTGAATTTCTTCCCCTTGAGCAGCTTGCTTTTCCTGAAAAAAAAACATCGAAAATTGCAAAATTATCGCAACTCACTCTCTGCTTCATTCGTTCCATCACCGACTTGGCGCAATACATAAATAGCTCCGCTATTTTCCCACCCCGAACATTCTCGTGGTTGTAAAACAACTGTTTCACTTTGAACTCGAATTGAGGGAAGATTGAAGCCAAGTACCAAGGGAGCACTCTAT</canonical>
            <polymorphic>GGTGACCTTTTCTGGAGACGTAGTGGTACACCCTTGAAAGTGTAGTTGATCCTCTGTTTCGGGTCCCGCGACGATTGACCATTTACGGAGCACGTGTGCCAATGCCATCTTTGCTTCCGACATCCCAAGTCTCATTCCCACACATTTTCGCTTGCCGGCACCAAACGCAAGAGATGCAAGTGGATGACGTTGCTCATCAAACCACCTGGAATAGCGTTTTTTTTCAAAAAATTCAGTAATTTAAAAATACCTTTCGGGAACAAATAGTTCTGTACCATCTCCCCAAATCTCTTTGGAATAATGGATGGCTTTGACATCTGCTTCAATTCGGACACCTTCATCGATGAGGTGAGGTCCGAGTGTAGTCTGCTTCACGCATTCACGCGAGCAAGCACTGAAAATGAGAAACTTTTGGAAAAATAAAAATAAATAAAAACTTACAACCAAGCCACTGGAGAGAGTCTCAATGATTCCTTTATAACTGCATCCAAATATTGAARTTGGCCTATTTGTTCATATGTGATGTTGTCTAAATTGCTAACTTCATCAATCTCTTCCTGGGCGATCTTCATTTTTTCGGGATTCAACGCCAGAAGATGTGCTGCGCATCCGAGAGCATTGGCTGTAGTATCGAATCCTGCTAATAGGAGCACGAAGCAAGAACCAATGACGTCTTCCACCACGCTTGCTTGATTGTCTTTCCGCTTTCGTTGTAGCTTTGCTCAATTTCCGAGTAGTGATCCAGGAACAGATCAATAAAGTCATTCTGCTGAATTTCTTCCCCTTGAGCAGCTTGCTTTTCCTGAAAAAAAAACATCGAAAATTGCAAAATTATCGCAACTCACTCTCTGCTTCATTCGTTCCATCACCGACTTGGCGCAATACATAAATAGCTCCGCTATTTTCCCACCCCGAACATTCTCGTGGTTGTAAAACAACTGTTTCACTTTGAACTCGAATTGAGGGAAGATTGAAGCCAAGTACCAAGGGAGCACTCTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAATGGATGGCTTTGACAT</pcr_primer_p1>
		<pcr_primer_p2>AGGAAGAGATTGATGAAGTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>AATAATGGATGGCTTTGACATCTGCTTCAATTCGGACACCTTCATCGATGAGGTGAGGTCCGAGTGTAGTCTGCTTCACGCATTCACGCGAGCAAGCACTGAAAATGAGAAACTTTTGGAAAAATAAAAATAAATAAAAACTTACAACCAAGCCACTGGAGAGAGTCTCAATGATTCCTTTATAACTGCATCCAAATATTGAAGTTGGCCTATTTGTTCATATGTGATGTTGTCTAAATTGCTAACTTCATCAATCTCTTCCT</canonical_amplicon>
		<polymorphic_amplicon>AATAATGGATGGCTTTGACATCTGCTTCAATTCGGACACCTTCATCGATGAGGTGAGGTCCGAGTGTAGTCTGCTTCACGCATTCACGCGAGCAAGCACTGAAAATGAGAAACTTTTGGAAAAATAAAAATAAATAAAAACTTACAACCAAGCCACTGGAGAGAGTCTCAATGATTCCTTTATAACTGCATCCAAATATTGAARTTGGCCTATTTGTTCATATGTGATGTTGTCTAAATTGCTAACTTCATCAATCTCTTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36679</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>54432</contig_pos>
        <strand>+</strand>
        <context>AATCAATTCG[A/G]GTTCCAGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGAAGATACAGTAAGTTTTCATAAACCTAAAGGTTTGAAAATCAATTCG</left_flank>
        <right_flank>GTTCCAGAAAATGCCAAGATTCCCCGCATCGGATCGAAAGATGTCTGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTAAAACTACAAGCATTTTATCTGTGGAGAACTTTCTCGTATATCATAGCTCAAAGTTTATAGTAGCCCAAAAAATACATTTTTTCGGTATAATGCTTGTTTGTAAATGATTTTTCAGAAATGACATTTCCCACGTGAGCCTTTACTTCTCGCGTGTGGCCTATGAGAGAATAGAACAGCAAAAACAATTACAAACGGCCGATTTGTTATCCAACATTGCAGGAAGTATGGGACTATTCCTCGGAATGAGTACTGTGAGAAATAAAAAATTTCTGATATCCTAAACAATTTTTGTATCAGGTCACCCTTCTCGAGATCTTCATTTATCTTTTCAAATCCGTCTGGGGAACTGTAAACTCCACTAGGCAACAACAATTCGTTGATGCGGTTGCTGAAGAAGAGAAAGAACGAGCACAGAGTATCGTTATTATTCAAAATGGAGGCAACGATGAAGATACAGTAAGTTTTCATAAACCTAAAGGTTTGAAAATCAATTCGAGTTCCAGAAAATGCCAAGATTCCCCGCATCGGATCGAAAGATGTCTGGAAACTCGATTCATATTCATCTAGACAGAAGAAACAGTCGCATGGTAAGCTTTGGAAAGGTGTTTCAATTATTATAAAAGATTTTTCAGTTAAGAGGAGGAGATTTGTTCTCAGCTCCGCGTGGATCTGTCAGCATCCCATCACAGCTGTTATCTCCACTCTCCAAGCATAGCAGGTAATAAGATACGTTGAAAAACCTACAATACCTCTCAATAAAACATCCAAAACATCTTTTTCAGTAAATTTTCGGTAGTTTTAACAATTTTCAAGAGTTTGGAGCTCGAATGTTAAGTTTCTGATCACTTTGAAAATTTAAGGAAATGGTAAACAGACCCAAACTATCAATTTTCTATTACAGATATTTTTGAGAATCACTGGTTTTTCAGCTACCTGCTGATTTCTGAAAGACACCCTTTGTTAACCCGTTTTTGCACTGAAAACCTAAAAAAACAG</canonical>
            <polymorphic>CTTAAAACTACAAGCATTTTATCTGTGGAGAACTTTCTCGTATATCATAGCTCAAAGTTTATAGTAGCCCAAAAAATACATTTTTTCGGTATAATGCTTGTTTGTAAATGATTTTTCAGAAATGACATTTCCCACGTGAGCCTTTACTTCTCGCGTGTGGCCTATGAGAGAATAGAACAGCAAAAACAATTACAAACGGCCGATTTGTTATCCAACATTGCAGGAAGTATGGGACTATTCCTCGGAATGAGTACTGTGAGAAATAAAAAATTTCTGATATCCTAAACAATTTTTGTATCAGGTCACCCTTCTCGAGATCTTCATTTATCTTTTCAAATCCGTCTGGGGAACTGTAAACTCCACTAGGCAACAACAATTCGTTGATGCGGTTGCTGAAGAAGAGAAAGAACGAGCACAGAGTATCGTTATTATTCAAAATGGAGGCAACGATGAAGATACAGTAAGTTTTCATAAACCTAAAGGTTTGAAAATCAATTCGRGTTCCAGAAAATGCCAAGATTCCCCGCATCGGATCGAAAGATGTCTGGAAACTCGATTCATATTCATCTAGACAGAAGAAACAGTCGCATGGTAAGCTTTGGAAAGGTGTTTCAATTATTATAAAAGATTTTTCAGTTAAGAGGAGGAGATTTGTTCTCAGCTCCGCGTGGATCTGTCAGCATCCCATCACAGCTGTTATCTCCACTCTCCAAGCATAGCAGGTAATAAGATACGTTGAAAAACCTACAATACCTCTCAATAAAACATCCAAAACATCTTTTTCAGTAAATTTTCGGTAGTTTTAACAATTTTCAAGAGTTTGGAGCTCGAATGTTAAGTTTCTGATCACTTTGAAAATTTAAGGAAATGGTAAACAGACCCAAACTATCAATTTTCTATTACAGATATTTTTGAGAATCACTGGTTTTTCAGCTACCTGCTGATTTCTGAAAGACACCCTTTGTTAACCCGTTTTTGCACTGAAAACCTAAAAAAACAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>313 275 185 171 37 19</canonical_bands>
                <polymorphic_bands>313 275 222 171 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGAGCACAGAGTATCGTTATTA</pcr_primer_p1>
		<pcr_primer_p2>AGAACAAATCTCCTCCTCTTAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGAGCACAGAGTATCGTTATTATTCAAAATGGAGGCAACGATGAAGATACAGTAAGTTTTCATAAACCTAAAGGTTTGAAAATCAATTCGAGTTCCAGAAAATGCCAAGATTCCCCGCATCGGATCGAAAGATGTCTGGAAACTCGATTCATATTCATCTAGACAGAAGAAACAGTCGCATGGTAAGCTTTGGAAAGGTGTTTCAATTATTATAAAAGATTTTTCAGTTAAGAGGAGGAGATTTGTTCT</canonical_amplicon>
		<polymorphic_amplicon>ACGAGCACAGAGTATCGTTATTATTCAAAATGGAGGCAACGATGAAGATACAGTAAGTTTTCATAAACCTAAAGGTTTGAAAATCAATTCGRGTTCCAGAAAATGCCAAGATTCCCCGCATCGGATCGAAAGATGTCTGGAAACTCGATTCATATTCATCTAGACAGAAGAAACAGTCGCATGGTAAGCTTTGGAAAGGTGTTTCAATTATTATAAAAGATTTTTCAGTTAAGAGGAGGAGATTTGTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36719</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>304895</contig_pos>
        <strand>+</strand>
        <context>TGGATTGATG[A/C]TCAGCAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACCAGACGCGGACAGTTCAGATTGTCAGCGGGTTCCCATGTGGATTGATG</left_flank>
        <right_flank>TCAGCAAAATTCTGAAAACCGAATTTTTGATTACATGTAATTGGTGGATT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCATTTTCTGCTCCTTTACTTCCTCTCTTTCTGGCAGTGGTATTTGCATTTCTTCCTCCTTTGCTTTATCTTTATAGTACCTTTCGAGCTGACGGGAGTAGCTGGAAACAAGAATTTCGAATGCAAAACCTAAATAGAAAACTTACTGGTTATGCATGTCTCTTCGAGAAACAAGTGCAAAAGTGTTGTCCACAAAACAACACAAATATTGAAGTTTCCCTGATGCTGTCGTGAGACCATGCACCTTTTTCATCATTTTTCGCGGTTTGGCTTTCTCCTCCTCGTCTTCAGAAGAAATCGGCGAAAGTCTACAGTTTGATTTTGGAAGTTTCGATTTCTTAGCTGGTGGCTCCGGAACACCTTTTGCATATCCCTGAAATATAAATTTTGTGGAACGTGGGAAAGTAATAGATATCTTACGGATTCTCTGTTTCTCTCGAATGCAGCAACCAGACGCGGACAGTTCAGATTGTCAGCGGGTTCCCATGTGGATTGATGCTCAGCAAAATTCTGAAAACCGAATTTTTGATTACATGTAATTGGTGGATTTTCGATAAACTAACCTTCCATTTCACCATGTATTCTAGTCGTTTTCCAATCTTTCTTCTTGCCAAAATTCGTTCGACAGTGTAAGAGCCATCATTATATGATTGCTGAAATGGATTAATAGATTGTAATACCAAAGATTTATTTGCAGCGTGGAATTTATGGAAACGCGCTCTATTGAAATCATATAGAGTATCGGTCAATAAGATTACAATACCAATCAATAAGATATACAAAAATGTATTTTTCAATTGATTTTCGGTCATTTTCAGGAATTTTAGGGGTCTGGAGCTCGGCTACGATCAATTTGAAAGTTTTGGAGGGTGTTAAACAGATCCAAATTAAGAAAATTTGCATTTGTAGAATTGTTGGTACATCCACACCCTCCAGAATTTTCGAAGTGATCGGAAACTTAACAACCGAGCTCGAGACACTTGAAAATGGTCCAAATGA</canonical>
            <polymorphic>ATCATTTTCTGCTCCTTTACTTCCTCTCTTTCTGGCAGTGGTATTTGCATTTCTTCCTCCTTTGCTTTATCTTTATAGTACCTTTCGAGCTGACGGGAGTAGCTGGAAACAAGAATTTCGAATGCAAAACCTAAATAGAAAACTTACTGGTTATGCATGTCTCTTCGAGAAACAAGTGCAAAAGTGTTGTCCACAAAACAACACAAATATTGAAGTTTCCCTGATGCTGTCGTGAGACCATGCACCTTTTTCATCATTTTTCGCGGTTTGGCTTTCTCCTCCTCGTCTTCAGAAGAAATCGGCGAAAGTCTACAGTTTGATTTTGGAAGTTTCGATTTCTTAGCTGGTGGCTCCGGAACACCTTTTGCATATCCCTGAAATATAAATTTTGTGGAACGTGGGAAAGTAATAGATATCTTACGGATTCTCTGTTTCTCTCGAATGCAGCAACCAGACGCGGACAGTTCAGATTGTCAGCGGGTTCCCATGTGGATTGATGMTCAGCAAAATTCTGAAAACCGAATTTTTGATTACATGTAATTGGTGGATTTTCGATAAACTAACCTTCCATTTCACCATGTATTCTAGTCGTTTTCCAATCTTTCTTCTTGCCAAAATTCGTTCGACAGTGTAAGAGCCATCATTATATGATTGCTGAAATGGATTAATAGATTGTAATACCAAAGATTTATTTGCAGCGTGGAATTTATGGAAACGCGCTCTATTGAAATCATATAGAGTATCGGTCAATAAGATTACAATACCAATCAATAAGATATACAAAAATGTATTTTTCAATTGATTTTCGGTCATTTTCAGGAATTTTAGGGGTCTGGAGCTCGGCTACGATCAATTTGAAAGTTTTGGAGGGTGTTAAACAGATCCAAATTAAGAAAATTTGCATTTGTAGAATTGTTGGTACATCCACACCCTCCAGAATTTTCGAAGTGATCGGAAACTTAACAACCGAGCTCGAGACACTTGAAAATGGTCCAAATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCTNAGC</site>
                <isoschizomers>
                    <enzyme>BlpI</enzyme>
                    <enzyme>Bpu1102I</enzyme>
                    <enzyme>Bsp1720I</enzyme>
                    <enzyme>CelII</enzyme>
                    <enzyme>EspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 339 161</canonical_bands>
                <polymorphic_bands>661 339</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTCTCTGTTTCTCTCGAATG</pcr_primer_p1>
		<pcr_primer_p2>TCTATTAATCCATTTCAGCAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATTCTCTGTTTCTCTCGAATGCAGCAACCAGACGCGGACAGTTCAGATTGTCAGCGGGTTCCCATGTGGATTGATGCTCAGCAAAATTCTGAAAACCGAATTTTTGATTACATGTAATTGGTGGATTTTCGATAAACTAACCTTCCATTTCACCATGTATTCTAGTCGTTTTCCAATCTTTCTTCTTGCCAAAATTCGTTCGACAGTGTAAGAGCCATCATTATATGATTGCTGAAATGGATTAATAGA</canonical_amplicon>
		<polymorphic_amplicon>GATTCTCTGTTTCTCTCGAATGCAGCAACCAGACGCGGACAGTTCAGATTGTCAGCGGGTTCCCATGTGGATTGATGMTCAGCAAAATTCTGAAAACCGAATTTTTGATTACATGTAATTGGTGGATTTTCGATAAACTAACCTTCCATTTCACCATGTATTCTAGTCGTTTTCCAATCTTTCTTCTTGCCAAAATTCGTTCGACAGTGTAAGAGCCATCATTATATGATTGCTGAAATGGATTAATAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36720</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>310988</contig_pos>
        <strand>+</strand>
        <context>TTCATCTCCT[A/C]GTCGAGAGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCATATGGTTTCAAATGTTGACGGCAGAAGATAAGATGTTTCATCTCCT</left_flank>
        <right_flank>GTCGAGAGCTTCTCGAGTGTGTTCGGCGTACATATCGAAGAATTTGCGAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAATATATCGGTCGTAAAACACGTGAGATTCCACGCAGCACTGAAATGATAAACATGGAATGGAAATTCAATTTGAAAAAAAACCTACGCGCTTGATGACCATATCCTTGAATGACCAGACCCTGTGACGGGCTTCAGCATTCTCAAATGTTATTGCAGCAAACATATAATCAATTTCTTTCTTCATGCATTCGTACGCTTCTATATAAAGAGTTTCGCAGAGCTTCATGAATTGGCGTGAATCAACTGATTTATTGATAGCTTCGTTCATGTTGTCATCCAGCTTGACCCGGAACTCGTCTATGGCACTGGCGTGAACATCAGCCAAAACACAGTCTTCGTACATTCGATCTTTTTTAAGTCTTTCGAGCATTCCGTTCGCGCTTTTCCCTTGTATTTCAAATATTTTGTCTTGTCGCTTCCATCGATTTCTAGTCTTCTCCGTTTCTTCATATGGTTTCAAATGTTGACGGCAGAAGATAAGATGTTTCATCTCCTCGTCGAGAGCTTCTCGAGTGTGTTCGGCGTACATATCGAAGAATTTGCGACCCTCTTCGAAACACTGAAATAGAGACATCAAACAAAATTGGTTTTCTTGAAATTTCAGCACAATAGGAAAAAACGTACTTGTTCCTTTGTCTTGCTCTAACAAGTGCTTTCGAACAAAGTCGTGCTCCTCAACAGTTTGAGCTTTGCATGTTAATCTATCAATGAGGAGAAATGCTTCAGACTGAAACACGTTCAGACCATGCGCATGGACGTCGAACCGAGTGTAGAATTCGAGTGTAGAATTCGAACCAAGTGTAGAATCGGAAGAAGCGATTTTTGGTGGCTTTGACATAGCAGACTTCTGGAAATCAAAAATATTTTGCAATGGAAAAAATGATCAAACGAAACGAAGCGAAACAAGTCACAGTTTATGAATAACGTAAAGTGTTTTTCACCAAGTAAGTCCTTCCAGTGAAGTTATGATCAGACAAAAGTTGCTGACTGAACACA</canonical>
            <polymorphic>TCAATATATCGGTCGTAAAACACGTGAGATTCCACGCAGCACTGAAATGATAAACATGGAATGGAAATTCAATTTGAAAAAAAACCTACGCGCTTGATGACCATATCCTTGAATGACCAGACCCTGTGACGGGCTTCAGCATTCTCAAATGTTATTGCAGCAAACATATAATCAATTTCTTTCTTCATGCATTCGTACGCTTCTATATAAAGAGTTTCGCAGAGCTTCATGAATTGGCGTGAATCAACTGATTTATTGATAGCTTCGTTCATGTTGTCATCCAGCTTGACCCGGAACTCGTCTATGGCACTGGCGTGAACATCAGCCAAAACACAGTCTTCGTACATTCGATCTTTTTTAAGTCTTTCGAGCATTCCGTTCGCGCTTTTCCCTTGTATTTCAAATATTTTGTCTTGTCGCTTCCATCGATTTCTAGTCTTCTCCGTTTCTTCATATGGTTTCAAATGTTGACGGCAGAAGATAAGATGTTTCATCTCCTMGTCGAGAGCTTCTCGAGTGTGTTCGGCGTACATATCGAAGAATTTGCGACCCTCTTCGAAACACTGAAATAGAGACATCAAACAAAATTGGTTTTCTTGAAATTTCAGCACAATAGGAAAAAACGTACTTGTTCCTTTGTCTTGCTCTAACAAGTGCTTTCGAACAAAGTCGTGCTCCTCAACAGTTTGAGCTTTGCATGTTAATCTATCAATGAGGAGAAATGCTTCAGACTGAAACACGTTCAGACCATGCGCATGGACGTCGAACCGAGTGTAGAATTCGAGTGTAGAATTCGAACCAAGTGTAGAATCGGAAGAAGCGATTTTTGGTGGCTTTGACATAGCAGACTTCTGGAAATCAAAAATATTTTGCAATGGAAAAAATGATCAAACGAAACGAAGCGAAACAAGTCACAGTTTATGAATAACGTAAAGTGTTTTTCACCAAGTAAGTCCTTCCAGTGAAGTTATGATCAGACAAAAGTTGCTGACTGAACACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>504 261 235</canonical_bands>
                <polymorphic_bands>765 235</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTCTTCGTACATTCGATCTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTGATGTCTCTATTTCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTCTTCGTACATTCGATCTTTTTTAAGTCTTTCGAGCATTCCGTTCGCGCTTTTCCCTTGTATTTCAAATATTTTGTCTTGTCGCTTCCATCGATTTCTAGTCTTCTCCGTTTCTTCATATGGTTTCAAATGTTGACGGCAGAAGATAAGATGTTTCATCTCCTCGTCGAGAGCTTCTCGAGTGTGTTCGGCGTACATATCGAAGAATTTGCGACCCTCTTCGAAACACTGAAATAGAGACATCAAACA</canonical_amplicon>
		<polymorphic_amplicon>AGTCTTCGTACATTCGATCTTTTTTAAGTCTTTCGAGCATTCCGTTCGCGCTTTTCCCTTGTATTTCAAATATTTTGTCTTGTCGCTTCCATCGATTTCTAGTCTTCTCCGTTTCTTCATATGGTTTCAAATGTTGACGGCAGAAGATAAGATGTTTCATCTCCTMGTCGAGAGCTTCTCGAGTGTGTTCGGCGTACATATCGAAGAATTTGCGACCCTCTTCGAAACACTGAAATAGAGACATCAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36721</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>311547</contig_pos>
        <strand>+</strand>
        <context>ATTTTTACAA[A/C]TCGTGCCAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGAAAAAGAAGAATTGCCTTAAAACACGTCAGAACAATACATTTTTACAA</left_flank>
        <right_flank>TCGTGCCAGGTTACACCAAACGCACAAGGAATGGGTAGCATGGACCAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACACTGAAATAGAGACATCAAACAAAATTGGTTTTCTTGAAATTTCAGCACAATAGGAAAAAACGTACTTGTTCCTTTGTCTTGCTCTAACAAGTGCTTTCGAACAAAGTCGTGCTCCTCAACAGTTTGAGCTTTGCATGTTAATCTATCAATGAGGAGAAATGCTTCAGACTGAAACACGTTCAGACCATGCGCATGGACGTCGAACCGAGTGTAGAATTCGAGTGTAGAATTCGAACCAAGTGTAGAATCGGAAGAAGCGATTTTTGGTGGCTTTGACATAGCAGACTTCTGGAAATCAAAAATATTTTGCAATGGAAAAAATGATCAAACGAAACGAAGCGAAACAAGTCACAGTTTATGAATAACGTAAAGTGTTTTTCACCAAGTAAGTCCTTCCAGTGAAGTTATGATCAGACAAAAGTTGCTGACTGAACACATGACAATATGAAAAAGAAGAATTGCCTTAAAACACGTCAGAACAATACATTTTTACAAATCGTGCCAGGTTACACCAAACGCACAAGGAATGGGTAGCATGGACCAATTATTTTTGGGTGAATGGTGAGAGTGTGTGAGATAAGTGGAGTGTGACAGAGAAATTTGACCTTACCGATGAACAGGACCACAACACCACAGTAATGGTCTGCGCCCAGCGCGAATGTAACGCGGTATTAGCTCGACAATCCGTTTAGGTGTAAATCAGAAAATGTTTATAGCCAAGAGGAGGAAATTTATTCTTATTGTAAGAGGACAAAAATGGACGCAAGGCAGAAAACGAAATTTGAGCTCGTAAATCGCTTCCACATCAAACGCAAGGGTCTCGCACGGATTTGTCGAGTGGCCTAGAAAGACTAGCGGCTGGCCTAGAAAACCTCAGCTTTTTTAATTGCCGCGGCCGCAGCAAAATGCTGATTTGCTTTTGTTTTCGGGTCATGCATTGCATACAGAAAATTTAACAGAGGGGATTTTAATTTTTTTTTAATTGGATACATTTTC</canonical>
            <polymorphic>AACACTGAAATAGAGACATCAAACAAAATTGGTTTTCTTGAAATTTCAGCACAATAGGAAAAAACGTACTTGTTCCTTTGTCTTGCTCTAACAAGTGCTTTCGAACAAAGTCGTGCTCCTCAACAGTTTGAGCTTTGCATGTTAATCTATCAATGAGGAGAAATGCTTCAGACTGAAACACGTTCAGACCATGCGCATGGACGTCGAACCGAGTGTAGAATTCGAGTGTAGAATTCGAACCAAGTGTAGAATCGGAAGAAGCGATTTTTGGTGGCTTTGACATAGCAGACTTCTGGAAATCAAAAATATTTTGCAATGGAAAAAATGATCAAACGAAACGAAGCGAAACAAGTCACAGTTTATGAATAACGTAAAGTGTTTTTCACCAAGTAAGTCCTTCCAGTGAAGTTATGATCAGACAAAAGTTGCTGACTGAACACATGACAATATGAAAAAGAAGAATTGCCTTAAAACACGTCAGAACAATACATTTTTACAAMTCGTGCCAGGTTACACCAAACGCACAAGGAATGGGTAGCATGGACCAATTATTTTTGGGTGAATGGTGAGAGTGTGTGAGATAAGTGGAGTGTGACAGAGAAATTTGACCTTACCGATGAACAGGACCACAACACCACAGTAATGGTCTGCGCCCAGCGCGAATGTAACGCGGTATTAGCTCGACAATCCGTTTAGGTGTAAATCAGAAAATGTTTATAGCCAAGAGGAGGAAATTTATTCTTATTGTAAGAGGACAAAAATGGACGCAAGGCAGAAAACGAAATTTGAGCTCGTAAATCGCTTCCACATCAAACGCAAGGGTCTCGCACGGATTTGTCGAGTGGCCTAGAAAGACTAGCGGCTGGCCTAGAAAACCTCAGCTTTTTTAATTGCCGCGGCCGCAGCAAAATGCTGATTTGCTTTTGTTTTCGGGTCATGCATTGCATACAGAAAATTTAACAGAGGGGATTTTAATTTTTTTTTAATTGGATACATTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAACGTAAAGTGTTTTTCACC</pcr_primer_p1>
		<pcr_primer_p2>GTAAGGTCAAATTTCTCTGTCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATAACGTAAAGTGTTTTTCACCAAGTAAGTCCTTCCAGTGAAGTTATGATCAGACAAAAGTTGCTGACTGAACACATGACAATATGAAAAAGAAGAATTGCCTTAAAACACGTCAGAACAATACATTTTTACAAATCGTGCCAGGTTACACCAAACGCACAAGGAATGGGTAGCATGGACCAATTATTTTTGGGTGAATGGTGAGAGTGTGTGAGATAAGTGGAGTGTGACAGAGAAATTTGACCTTAC</canonical_amplicon>
		<polymorphic_amplicon>AATAACGTAAAGTGTTTTTCACCAAGTAAGTCCTTCCAGTGAAGTTATGATCAGACAAAAGTTGCTGACTGAACACATGACAATATGAAAAAGAAGAATTGCCTTAAAACACGTCAGAACAATACATTTTTACAAMTCGTGCCAGGTTACACCAAACGCACAAGGAATGGGTAGCATGGACCAATTATTTTTGGGTGAATGGTGAGAGTGTGTGAGATAAGTGGAGTGTGACAGAGAAATTTGACCTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36722</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>312681</contig_pos>
        <strand></strand>
        <context>AAGCATTacc[G/T]tattttctct</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGAACTATTTGAAACAACAAACTTCTAGAAAAAAAAGAGAAGCATTACC</left_flank>
        <right_flank>TATTTTCTCTAATAGAAACTCATCAAATCATAGACTTCGAGCTCGATTAT</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAACGTTTGTTGGCTAGGCTGAGAATCATTTTAGGGCGAGGAATTGATGTTGAGAGATTAGTAAACGGTTCAAGATAATTTACGAAGAACGGGCAAAAAAGTGAAACAGGGAGAAAATAAGTAGACGGTAATTCAGGCTTCATGTCTGATTGAATCGTGATAAAAAGGAAAAGAAAATTAGTGAGGTGTAAGATGAAACCGGAAAAAAATAATTAAGGGTATTTCGAGCATCATGGGACTGCTAGGAAAGCAATTAATACTTAAAAATAGATATGATTTTGAATAATTTCGAAAAATAACGTTGGTTGAGTCAAAATATGTTTCGTTATGCTCTTCATTTCGAAATAGAGCACTTGGCGATCATTTTGGCGAGAATATCGGTTCGGTGTTCAGGATGGCTAGGTGGACGGACTGATTCCCGGTTCTGAGTGGGGACTTGGGCCTGAAAATGAACTATTTGAAACAACAAACTTCTAGAAAAAAAAGAGAAGCATTACCGTATTTTCTCTAATAGAAACTCATCAAATCATAGACTTCGAGCTCGATTATCTTGATATTTGTGGAAGATATAACATTTCTGTCAACTGATTAAGTGTTGGTGGTACTTCAATGAAAATGTATCAGTTGATAAAATTTTGATATCATTCACAAAAATTGAGATAACTAAGCTCAAATTTGACAATATGGGCGGGGAGTAAATTAGAGGAAACATGAAATTCCCCCGATCGAAATAGATAAAAACATACATTCTGATTTGACGTTCTTGCCGATTGTGCTGCTGCATTCTCCTCCGTCCTTTGGCGTTGCAGGTTTTGCAGGTATGTGTAATTTCTCGATCGTTGTGCTCTTTGTAACCGCGAAGTTTTTAATCGTTGCGCTCTTTCTGCCCTCGAAGTGTTTTGAGTGCTTGACCCTTGCTGACTTGATTGAACCGGAGCCTTCACTTCATCTCGAAATTGCTCATTCTTCTTTTTCGGAGCTTCAACATTGAGATTTTGA</canonical>
            <polymorphic>GAAACGTTTGTTGGCTAGGCTGAGAATCATTTTAGGGCGAGGAATTGATGTTGAGAGATTAGTAAACGGTTCAAGATAATTTACGAAGAACGGGCAAAAAAGTGAAACAGGGAGAAAATAAGTAGACGGTAATTCAGGCTTCATGTCTGATTGAATCGTGATAAAAAGGAAAAGAAAATTAGTGAGGTGTAAGATGAAACCGGAAAAAAATAATTAAGGGTATTTCGAGCATCATGGGACTGCTAGGAAAGCAATTAATACTTAAAAATAGATATGATTTTGAATAATTTCGAAAAATAACGTTGGTTGAGTCAAAATATGTTTCGTTATGCTCTTCATTTCGAAATAGAGCACTTGGCGATCATTTTGGCGAGAATATCGGTTCGGTGTTCAGGATGGCTAGGTGGACGGACTGATTCCCGGTTCTGAGTGGGGACTTGGGCCTGAAAATGAACTATTTGAAACAACAAACTTCTAGAAAAAAAAGAGAAGCATTACCKTATTTTCTCTAATAGAAACTCATCAAATCATAGACTTCGAGCTCGATTATCTTGATATTTGTGGAAGATATAACATTTCTGTCAACTGATTAAGTGTTGGTGGTACTTCAATGAAAATGTATCAGTTGATAAAATTTTGATATCATTCACAAAAATTGAGATAACTAAGCTCAAATTTGACAATATGGGCGGGGAGTAAATTAGAGGAAACATGAAATTCCCCCGATCGAAATAGATAAAAACATACATTCTGATTTGACGTTCTTGCCGATTGTGCTGCTGCATTCTCCTCCGTCCTTTGGCGTTGCAGGTTTTGCAGGTATGTGTAATTTCTCGATCGTTGTGCTCTTTGTAACCGCGAAGTTTTTAATCGTTGCGCTCTTTCTGCCCTCGAAGTGTTTTGAGTGCTTGACCCTTGCTGACTTGATTGAACCGGAGCCTTCACTTCATCTCGAAATTGCTCATTCTTCTTTTTCGGAGCTTCAACATTGAGATTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 371 68 60</canonical_bands>
                <polymorphic_bands>872 68 60</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATGAACTATTTGAAACAACAA</pcr_primer_p1>
		<pcr_primer_p2>TCATGTTTCCTCTAATTTACTCC</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>AAAATGAACTATTTGAAACAACAAACTTCTAGAAAAAAAAGAGAAGCATTACCGTATTTTCTCTAATAGAAACTCATCAAATCATAGACTTCGAGCTCGATTATCTTGATATTTGTGGAAGATATAACATTTCTGTCAACTGATTAAGTGTTGGTGGTACTTCAATGAAAATGTATCAGTTGATAAAATTTTGATATCATTCACAAAAATTGAGATAACTAAGCTCAAATTTGACAATATGGGCGGGGAGTAAATTAGAGGAAACATGA</canonical_amplicon>
		<polymorphic_amplicon>AAAATGAACTATTTGAAACAACAAACTTCTAGAAAAAAAAGAGAAGCATTACCKTATTTTCTCTAATAGAAACTCATCAAATCATAGACTTCGAGCTCGATTATCTTGATATTTGTGGAAGATATAACATTTCTGTCAACTGATTAAGTGTTGGTGGTACTTCAATGAAAATGTATCAGTTGATAAAATTTTGATATCATTCACAAAAATTGAGATAACTAAGCTCAAATTTGACAATATGGGCGGGGAGTAAATTAGAGGAAACATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36723</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>313190</contig_pos>
        <strand>+</strand>
        <context>GAACATCCGA[G/T]GAGACCGCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGCTCATTCTTCTTTTTCGGAGCTTCAACATTGAGATTTTGAACATCCGA</left_flank>
        <right_flank>GAGACCGCATTCATCTTTCCCTGAACCTGATTCTCATATTGATTTTGGAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATAGAAACTCATCAAATCATAGACTTCGAGCTCGATTATCTTGATATTTGTGGAAGATATAACATTTCTGTCAACTGATTAAGTGTTGGTGGTACTTCAATGAAAATGTATCAGTTGATAAAATTTTGATATCATTCACAAAAATTGAGATAACTAAGCTCAAATTTGACAATATGGGCGGGGAGTAAATTAGAGGAAACATGAAATTCCCCCGATCGAAATAGATAAAAACATACATTCTGATTTGACGTTCTTGCCGATTGTGCTGCTGCATTCTCCTCCGTCCTTTGGCGTTGCAGGTTTTGCAGGTATGTGTAATTTCTCGATCGTTGTGCTCTTTGTAACCGCGAAGTTTTTAATCGTTGCGCTCTTTCTGCCCTCGAAGTGTTTTGAGTGCTTGACCCTTGCTGACTTGATTGAACCGGAGCCTTCACTTCATCTCGAAATTGCTCATTCTTCTTTTTCGGAGCTTCAACATTGAGATTTTGAACATCCGAGGAGACCGCATTCATCTTTCCCTGAACCTGATTCTCATATTGATTTTGGACCTCTTCTGCGATTCTTTGTGGCCCCGAAGTGCTTTGAGTGCTCGATCCTTGCAGACTTGACTGAACCGAAGCTTTAACTTCCTTTCGAGATTGCTCATTCTTCTTTTTCGGAGCTTCAACATTGAGATTTTGAACATCCGAGGAGACCGCATTCATCTTTCCCTGAACCTGATTCTCATATTGGATTTGGACCTCTTCTGCGATTCTTTGTGGCCCCGAAGTGCTTTGAGTGCTCGATCCTTGCAGACTTGACTGAACCGAAGCTTTAACTTCCTTTCGAGATTGCTCATTCTTTTTTTTCGGAGCTTCAACATTGAGATTTTGAACATCCGAGGAGACCGCATTCATCTTTCCCTGAACCTGATTCTCATATTGATTTTGGACCTCTTCTGCGATTCTTTGTGGCCCCGAAGTGCTTTGAGTGCTCGATCCTTGCAGACTTGACTGAAC</canonical>
            <polymorphic>TAATAGAAACTCATCAAATCATAGACTTCGAGCTCGATTATCTTGATATTTGTGGAAGATATAACATTTCTGTCAACTGATTAAGTGTTGGTGGTACTTCAATGAAAATGTATCAGTTGATAAAATTTTGATATCATTCACAAAAATTGAGATAACTAAGCTCAAATTTGACAATATGGGCGGGGAGTAAATTAGAGGAAACATGAAATTCCCCCGATCGAAATAGATAAAAACATACATTCTGATTTGACGTTCTTGCCGATTGTGCTGCTGCATTCTCCTCCGTCCTTTGGCGTTGCAGGTTTTGCAGGTATGTGTAATTTCTCGATCGTTGTGCTCTTTGTAACCGCGAAGTTTTTAATCGTTGCGCTCTTTCTGCCCTCGAAGTGTTTTGAGTGCTTGACCCTTGCTGACTTGATTGAACCGGAGCCTTCACTTCATCTCGAAATTGCTCATTCTTCTTTTTCGGAGCTTCAACATTGAGATTTTGAACATCCGAKGAGACCGCATTCATCTTTCCCTGAACCTGATTCTCATATTGATTTTGGACCTCTTCTGCGATTCTTTGTGGCCCCGAAGTGCTTTGAGTGCTCGATCCTTGCAGACTTGACTGAACCGAAGCTTTAACTTCCTTTCGAGATTGCTCATTCTTCTTTTTCGGAGCTTCAACATTGAGATTTTGAACATCCGAGGAGACCGCATTCATCTTTCCCTGAACCTGATTCTCATATTGGATTTGGACCTCTTCTGCGATTCTTTGTGGCCCCGAAGTGCTTTGAGTGCTCGATCCTTGCAGACTTGACTGAACCGAAGCTTTAACTTCCTTTCGAGATTGCTCATTCTTTTTTTTCGGAGCTTCAACATTGAGATTTTGAACATCCGAGGAGACCGCATTCATCTTTCCCTGAACCTGATTCTCATATTGATTTTGGACCTCTTCTGCGATTCTTTGTGGCCCCGAAGTGCTTTGAGTGCTCGATCCTTGCAGACTTGACTGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>496 192 192 120</canonical_bands>
                <polymorphic_bands>688 192 120</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGCAGGTATGTGTAATTTCT</pcr_primer_p1>
		<pcr_primer_p2>GAGGTCCAAAATCAATATGAGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTTGCAGGTATGTGTAATTTCTCGATCGTTGTGCTCTTTGTAACCGCGAAGTTTTTAATCGTTGCGCTCTTTCTGCCCTCGAAGTGTTTTGAGTGCTTGACCCTTGCTGACTTGATTGAACCGGAGCCTTCACTTCATCTCGAAATTGCTCATTCTTCTTTTTCGGAGCTTCAACATTGAGATTTTGAACATCCGAGGAGACCGCATTCATCTTTCCCTGAACCTGATTCTCATATTGATTTTGGACCTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGCAGGTATGTGTAATTTCTCGATCGTTGTGCTCTTTGTAACCGCGAAGTTTTTAATCGTTGCGCTCTTTCTGCCCTCGAAGTGTTTTGAGTGCTTGACCCTTGCTGACTTGATTGAACCGGAGCCTTCACTTCATCTCGAAATTGCTCATTCTTCTTTTTCGGAGCTTCAACATTGAGATTTTGAACATCCGAKGAGACCGCATTCATCTTTCCCTGAACCTGATTCTCATATTGATTTTGGACCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36724</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>315481</contig_pos>
        <strand>+</strand>
        <context>AACAACAGCA[A/T]GAAAAAACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAGCTAAAATGATGACAAAGCGAAATATTTCAAGCTGGGAACAACAGCA</left_flank>
        <right_flank>GAAAAAACAAAACAAAAATTGAAAGAAAACAACATTTTTAGTTTTATTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCACGAGTGTGATTGGCGAGCAGTTTGTAAAAATTGTGGCCCACTGTGAAACACTGAAATAAAAACACAATTATGATTTGGTTATGTAAATATTTTAGCACAATAGAAAGAAAACGAACCTGTACGTAAACTAAATGTTTCACCGCATCCAGACGATCAGCATGTTTGTCCTCCACTTCCTCAAATCCCGAATCAATTGCATATTCCATTCTCCTTATTGCTCTAGCACACGCTTTATCACAAATTAAGTCGTGCTCCTCAACTGTTTGAGAAGTGAATTTTAATATATCAATGAGGAAAAATAGTTCCGCCCGAAATACGTTGAGACCATAAGCATGAACGTCGAATCGAGTGTAGAACTGAACATCAGAAAGATGGTTTTTTGATGGTTTTGGCATAGCAGATTCCTGAAAATTGATAGTATTTTGCGAAACTGATGAAATGAAACAAAGCTAAAATGATGACAAAGCGAAATATTTCAAGCTGGGAACAACAGCAAGAAAAAACAAAACAAAAATTGAAAGAAAACAACATTTTTAGTTTTATTCATATTGACGTTTAATAATTAATACTAAACCCTCAACCAAAAAAAATTACGATATTGTCGGNNNNNNNNNNAAAATCTCATTAAATCCGATGATCTCCCAAGTGGCGCTAAAACACCACGCCGCACTTGCAAAGCGATGGGCGGAGCGTCGGTGTGGGGAGGCGGGAATCAAAGTACGCAAACACCGAGTGTCACTTTTTTTATTCCGACAATAGAACACTAAAATACAAGAAAGTTCAAAAAATACAGAGGAAGAAAAACGAGATCGTAGCCAACAGTTTTGAAATCATTAGAACATGAATGGAAGTTTGAAATGAAGTAGTATAGGAAACATTATTCAAAAATTTGCATGCAGTGAAAAGTGTTTGTGGTAGATTTTTTGATTATTTCTTCTTCTTGACAACCCTCTTTCCTTTTGCTTTGGTTGTCGGTTCTTCAACAAGACCTCTATC</canonical>
            <polymorphic>TTCACGAGTGTGATTGGCGAGCAGTTTGTAAAAATTGTGGCCCACTGTGAAACACTGAAATAAAAACACAATTATGATTTGGTTATGTAAATATTTTAGCACAATAGAAAGAAAACGAACCTGTACGTAAACTAAATGTTTCACCGCATCCAGACGATCAGCATGTTTGTCCTCCACTTCCTCAAATCCCGAATCAATTGCATATTCCATTCTCCTTATTGCTCTAGCACACGCTTTATCACAAATTAAGTCGTGCTCCTCAACTGTTTGAGAAGTGAATTTTAATATATCAATGAGGAAAAATAGTTCCGCCCGAAATACGTTGAGACCATAAGCATGAACGTCGAATCGAGTGTAGAACTGAACATCAGAAAGATGGTTTTTTGATGGTTTTGGCATAGCAGATTCCTGAAAATTGATAGTATTTTGCGAAACTGATGAAATGAAACAAAGCTAAAATGATGACAAAGCGAAATATTTCAAGCTGGGAACAACAGCAWGAAAAAACAAAACAAAAATTGAAAGAAAACAACATTTTTAGTTTTATTCATATTGACGTTTAATAATTAATACTAAACCCTCAACCAAAAAAAATTACGATATTGTCGGNNNNNNNNNNAAAATCTCATTAAATCCGATGATCTCCCAAGTGGCGCTAAAACACCACGCCGCACTTGCAAAGCGATGGGCGGAGCGTCGGTGTGGGGAGGCGGGAATCAAAGTACGCAAACACCGAGTGTCACTTTTTTTATTCCGACAATAGAACACTAAAATACAAGAAAGTTCAAAAAATACAGAGGAAGAAAAACGAGATCGTAGCCAACAGTTTTGAAATCATTAGAACATGAATGGAAGTTTGAAATGAAGTAGTATAGGAAACATTATTCAAAAATTTGCATGCAGTGAAAAGTGTTTGTGGTAGATTTTTTGATTATTTCTTCTTCTTGACAACCCTCTTTCCTTTTGCTTTGGTTGTCGGTTCTTCAACAAGACCTCTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATCGAGTGTAGAACTGAACAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGGTTGAGGGTTTAGTATT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAATCGAGTGTAGAACTGAACATCAGAAAGATGGTTTTTTGATGGTTTTGGCATAGCAGATTCCTGAAAATTGATAGTATTTTGCGAAACTGATGAAATGAAACAAAGCTAAAATGATGACAAAGCGAAATATTTCAAGCTGGGAACAACAGCAAGAAAAAACAAAACAAAAATTGAAAGAAAACAACATTTTTAGTTTTATTCATATTGACGTTTAATAATTAATACTAAACCCTCAACCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAATCGAGTGTAGAACTGAACATCAGAAAGATGGTTTTTTGATGGTTTTGGCATAGCAGATTCCTGAAAATTGATAGTATTTTGCGAAACTGATGAAATGAAACAAAGCTAAAATGATGACAAAGCGAAATATTTCAAGCTGGGAACAACAGCAWGAAAAAACAAAACAAAAATTGAAAGAAAACAACATTTTTAGTTTTATTCATATTGACGTTTAATAATTAATACTAAACCCTCAACCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36725</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>323807</contig_pos>
        <strand>+</strand>
        <context>TTCGCAAAAT[A/G]CCTGATTATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGTTCAAAATTATGTGAATCAAAATTTTCAGTCTAAATCTTCGCAAAAT</left_flank>
        <right_flank>CCTGATTATTCTTCCTTCTAATTTTCAAATTGTGGCTCATTTTGAATTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCAATCACTAAAACAAGACAGAGGTCTTCAAAATTTAGCCTACTGTATCTGATTCTATTGAAAGTTTTCTGATTCTATTGAAAGATTTCTATGAGAATGTTTTACCGATGATTCATGCAAGATTCACCTTCTTTTGAATCCTCTTCTGCAATTGAGCTCGAGATTCCTTCGGAGCTGTTCCATGACGAGATTTGTACTTTTTGTGCCATTGATCCAGAAAAGCTTCCAGAGTTTTGATGGATTTTGGGAATGCAGAATGGAAAACTCTCGCTCTCCAAGTCTCATTCATCATATCATCGACGTCCAGATTGCCACTGAAGTCAATTGCCGAGTTCTCGAAAGTAGTGACTGCCTTGTAAACAAGAGCATTGATGTCTTTGTCTTCATCGAAACTCTTCCACTCCGACTTATCGAATGAGAGATGGACATCGTCAATCTGAAATAGGTCGTTCAAAATTATGTGAATCAAAATTTTCAGTCTAAATCTTCGCAAAATGCCTGATTATTCTTCCTTCTAATTTTCAAATTGTGGCTCATTTTGAATTAGAATAAACTAGAATAAAAACTCATAAAAATACTGAATGTTTATTTACTCTCTTAAATAAAAAACAAAACATTTTGACTTAAAAACTCCGCCAAATTACTAGAATTCTTGATATAAAGGTTGAGAAACAGTGACGCAAATAGGCGTAATTACTAGGTAAAGTTGAAATTCTTCTCGTGCGAAGCTCACGAGGACCTATAATTTGTGCTTGTCGGTGCTGCTTAGAATTTTGAAACAGATAATTCAAACTGTCCTTCGATCTTACTTTTTGAAATATTTTGAGAGTTTCATCCATGCAATAGTTTTCAAGTTTGGAATCTAGTAAGAACTTTCTAGGATTTTTTTATCTTGAGGAGCTTAATTGAGAGTAAGAAAAAAAGTCGTGGAGATATTTTTAAAGTAGTTGGCTTAGATTGGAAAGGTAATATGAGCAACAAATAGTTATACATCACA</canonical>
            <polymorphic>ATTTCAATCACTAAAACAAGACAGAGGTCTTCAAAATTTAGCCTACTGTATCTGATTCTATTGAAAGTTTTCTGATTCTATTGAAAGATTTCTATGAGAATGTTTTACCGATGATTCATGCAAGATTCACCTTCTTTTGAATCCTCTTCTGCAATTGAGCTCGAGATTCCTTCGGAGCTGTTCCATGACGAGATTTGTACTTTTTGTGCCATTGATCCAGAAAAGCTTCCAGAGTTTTGATGGATTTTGGGAATGCAGAATGGAAAACTCTCGCTCTCCAAGTCTCATTCATCATATCATCGACGTCCAGATTGCCACTGAAGTCAATTGCCGAGTTCTCGAAAGTAGTGACTGCCTTGTAAACAAGAGCATTGATGTCTTTGTCTTCATCGAAACTCTTCCACTCCGACTTATCGAATGAGAGATGGACATCGTCAATCTGAAATAGGTCGTTCAAAATTATGTGAATCAAAATTTTCAGTCTAAATCTTCGCAAAATRCCTGATTATTCTTCCTTCTAATTTTCAAATTGTGGCTCATTTTGAATTAGAATAAACTAGAATAAAAACTCATAAAAATACTGAATGTTTATTTACTCTCTTAAATAAAAAACAAAACATTTTGACTTAAAAACTCCGCCAAATTACTAGAATTCTTGATATAAAGGTTGAGAAACAGTGACGCAAATAGGCGTAATTACTAGGTAAAGTTGAAATTCTTCTCGTGCGAAGCTCACGAGGACCTATAATTTGTGCTTGTCGGTGCTGCTTAGAATTTTGAAACAGATAATTCAAACTGTCCTTCGATCTTACTTTTTGAAATATTTTGAGAGTTTCATCCATGCAATAGTTTTCAAGTTTGGAATCTAGTAAGAACTTTCTAGGATTTTTTTATCTTGAGGAGCTTAATTGAGAGTAAGAAAAAAAGTCGTGGAGATATTTTTAAAGTAGTTGGCTTAGATTGGAAAGGTAATATGAGCAACAAATAGTTATACATCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAAATAGGTCGTTCAAAATTA</pcr_primer_p1>
		<pcr_primer_p2>CTATTTGCGTCACTGTTTCTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTGAAATAGGTCGTTCAAAATTATGTGAATCAAAATTTTCAGTCTAAATCTTCGCAAAATGCCTGATTATTCTTCCTTCTAATTTTCAAATTGTGGCTCATTTTGAATTAGAATAAACTAGAATAAAAACTCATAAAAATACTGAATGTTTATTTACTCTCTTAAATAAAAAACAAAACATTTTGACTTAAAAACTCCGCCAAATTACTAGAATTCTTGATATAAAGGTTGAGAAACAGTGACGCAAATAG</canonical_amplicon>
		<polymorphic_amplicon>CTGAAATAGGTCGTTCAAAATTATGTGAATCAAAATTTTCAGTCTAAATCTTCGCAAAATRCCTGATTATTCTTCCTTCTAATTTTCAAATTGTGGCTCATTTTGAATTAGAATAAACTAGAATAAAAACTCATAAAAATACTGAATGTTTATTTACTCTCTTAAATAAAAAACAAAACATTTTGACTTAAAAACTCCGCCAAATTACTAGAATTCTTGATATAAAGGTTGAGAAACAGTGACGCAAATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36726</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>325065</contig_pos>
        <strand>+</strand>
        <context>GATGTATCTT[C/T]TTTTATAATW</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTTTGAAACTTCTTGCAAAGTTATAAAGTAGCTTCAGAGATGTATCTT</left_flank>
        <right_flank>TTTTATAATAAGGTGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTACAATCGAGTCCGATTCTGTTAGTTAGTTTTCTTGGAGAGCCATAGAAGTGTACCTTTCGGAGTTCTTACCTACCATAATCCCCGAAAACTCTCCCCCTAATTGTTCCGATAAATAATTGCTCTACTAGTTGCTCAAGAGAAATCAACATTTAGTATTACTCACCGCTTTGCGAACCACTTTGTCCCCTTCAGCAAAACATAACTTCTTATTCATTTTTCGAATGGAAGAAAAACTCGAAATTCACAAATCTGAGCAATGGGAGTCGTGGAAGTGCGCGTCGTGGCGAGGAGCGTCTACTCGCGTGTAGCTCCGCCTCTTTTTTTTTGGTGTCGCTTCAAGAGAAAAAAGGAAATAAAACATCCCCAGAATTGGCTTTTCCAACGTTTTGAAAGAAAGGGAACCCCTAACAACGGAGCACTAGATTCAATATGTTTTTGGGGTACTTTTTGAAACTTCTTGCAAAGTTATAAAGTAGCTTCAGAGATGTATCTTTTTTTATAATAAGGTGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAATCTCCTATTTTCGAAATTTCGGAATCATTCCATTTTCCCATCACAAAAATGTCGAAAATTAAGAAAAATTGACAAAAAAATTTCGAAAACGCAAAACAAGGTTAAAAGTTAGTCCGCTCAAGACCTGCAAGCAAATTTTGCGCATGCGCCTTCGACATACCGTAGTCCGAAAATCTTCAATGCCGAAACAAAGCTTCAAAAATGTTTCCGTCAAAATTTTTTCGGAATTCCGATATCTGTTTTTAACATCTCTATTTCTCCGAGTAAGGTATGTTCTAAGTTTCAGTAAACACTCAAATATATTCAAATTTCAAAATCGAAAGTGTCATTCAATGTTTGGTGTCATTCCTTATTGTCACGCGACGCAACGTTTAGTGCGTCACCTTTATTATCGATAAGTTCACCAAAATACTTCATGAGCTCACCTCATCTGGCCGTGGA</canonical>
            <polymorphic>TTTCTACAATCGAGTCCGATTCTGTTAGTTAGTTTTCTTGGAGAGCCATAGAAGTGTACCTTTCGGAGTTCTTACCTACCATAATCCCCGAAAACTCTCCCCCTAATTGTTCCGATAAATAATTGCTCTACTAGTTGCTCAAGAGAAATCAACATTTAGTATTACTCACCGCTTTGCGAACCACTTTGTCCCCTTCAGCAAAACATAACTTCTTATTCATTTTTCGAATGGAAGAAAAACTCGAAATTCACAAATCTGAGCAATGGGAGTCGTGGAAGTGCGCGTCGTGGCGAGGAGCGTCTACTCGCGTGTAGCTCCGCCTCTTTTTTTTTGGTGTCGCTTCAAGAGAAAAAAGGAAATAAAACATCCCCAGAATTGGCTTTTCCAACGTTTTGAAAGAAAGGGAACCCCTAACAACGGAGCACTAGATTCAATATGTTTTTGGGGTACTTTTTGAAACTTCTTGCAAAGTTATAAAGTAGCTTCAGAGATGTATCTTYTTTTATAATAAGGTGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAATCTCCTATTTTCGAAATTTCGGAATCATTCCATTTTCCCATCACAAAAATGTCGAAAATTAAGAAAAATTGACAAAAAAATTTCGAAAACGCAAAACAAGGTTAAAAGTTAGTCCGCTCAAGACCTGCAAGCAAATTTTGCGCATGCGCCTTCGACATACCGTAGTCCGAAAATCTTCAATGCCGAAACAAAGCTTCAAAAATGTTTCCGTCAAAATTTTTTCGGAATTCCGATATCTGTTTTTAACATCTCTATTTCTCCGAGTAAGGTATGTTCTAAGTTTCAGTAAACACTCAAATATATTCAAATTTCAAAATCGAAAGTGTCATTCAATGTTTGGTGTCATTCCTTATTGTCACGCGACGCAACGTTTAGTGCGTCACCTTTATTATCGATAAGTTCACCAAAATACTTCATGAGCTCACCTCATCTGGCCGTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGTTTTTGGGGTACTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>GGAGAAATAGAGATGTTAAAAACAG</pcr_primer_p2>
		<pcr_amplicon_size>386</pcr_amplicon_size>
		<canonical_amplicon>TATGTTTTTGGGGTACTTTTTGAAACTTCTTGCAAAGTTATAAAGTAGCTTCAGAGATGTATCTTTTTTTATAATAAGGTGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAATCTCCTATTTTCGAAATTTCGGAATCATTCCATTTTCCCATCACAAAAATGTCGAAAATTAAGAAAAATTGACAAAAAAATTTCGAAAACGCAAAACAAGGTTAAAAGTTAGTCCGCTCAAGACCTGCAAGCAAATTTTGCGCATGCGCCTTCGACATACCGTAGTCCGAAAATCTTCAATGCCGAAACAAAGCTTCAAAAATGTTTCCGTCAAAATTTTTTCGGAATTCCGATATCTGTTTTTAACATCTCTATTTCTCC</canonical_amplicon>
		<polymorphic_amplicon>TATGTTTTTGGGGTACTTTTTGAAACTTCTTGCAAAGTTATAAAGTAGCTTCAGAGATGTATCTTYTTTTATAATAAGGTGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAATCTCCTATTTTCGAAATTTCGGAATCATTCCATTTTCCCATCACAAAAATGTCGAAAATTAAGAAAAATTGACAAAAAAATTTCGAAAACGCAAAACAAGGTTAAAAGTTAGTCCGCTCAAGACCTGCAAGCAAATTTTGCGCATGCGCCTTCGACATACCGTAGTCCGAAAATCTTCAATGCCGAAACAAAGCTTCAAAAATGTTTCCGTCAAAATTTTTTCGGAATTCCGATATCTGTTTTTAACATCTCTATTTCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36727</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>325173</contig_pos>
        <strand></strand>
        <context>catcacaaaa[A/T]tgtcgaaaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATCTCCTATTTTCGAAATTTCGGAATCATTCCATTTTCCCATCACAAAA</left_flank>
        <right_flank>TGTCGAAAATTAAGAAAAATTGACAAAAAAATTTCGAAAACGCAAAACAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCCGATAAATAATTGCTCTACTAGTTGCTCAAGAGAAATCAACATTTAGTATTACTCACCGCTTTGCGAACCACTTTGTCCCCTTCAGCAAAACATAACTTCTTATTCATTTTTCGAATGGAAGAAAAACTCGAAATTCACAAATCTGAGCAATGGGAGTCGTGGAAGTGCGCGTCGTGGCGAGGAGCGTCTACTCGCGTGTAGCTCCGCCTCTTTTTTTTTGGTGTCGCTTCAAGAGAAAAAAGGAAATAAAACATCCCCAGAATTGGCTTTTCCAACGTTTTGAAAGAAAGGGAACCCCTAACAACGGAGCACTAGATTCAATATGTTTTTGGGGTACTTTTTGAAACTTCTTGCAAAGTTATAAAGTAGCTTCAGAGATGTATCTTTTTTTATAATAAGGTGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAATCTCCTATTTTCGAAATTTCGGAATCATTCCATTTTCCCATCACAAAAATGTCGAAAATTAAGAAAAATTGACAAAAAAATTTCGAAAACGCAAAACAAGGTTAAAAGTTAGTCCGCTCAAGACCTGCAAGCAAATTTTGCGCATGCGCCTTCGACATACCGTAGTCCGAAAATCTTCAATGCCGAAACAAAGCTTCAAAAATGTTTCCGTCAAAATTTTTTCGGAATTCCGATATCTGTTTTTAACATCTCTATTTCTCCGAGTAAGGTATGTTCTAAGTTTCAGTAAACACTCAAATATATTCAAATTTCAAAATCGAAAGTGTCATTCAATGTTTGGTGTCATTCCTTATTGTCACGCGACGCAACGTTTAGTGCGTCACCTTTATTATCGATAAGTTCACCAAAATACTTCATGAGCTCACCTCATCTGGCCGTGGAATATTTAGAGGGAACATTTTGGTATGTTCTTCTGAAATCTATTAGGATATGTGTATGACGAATAGAATGATGACAACAGTCACAAGCTTCTTAGAACTTAACAAATCA</canonical>
            <polymorphic>GTTCCGATAAATAATTGCTCTACTAGTTGCTCAAGAGAAATCAACATTTAGTATTACTCACCGCTTTGCGAACCACTTTGTCCCCTTCAGCAAAACATAACTTCTTATTCATTTTTCGAATGGAAGAAAAACTCGAAATTCACAAATCTGAGCAATGGGAGTCGTGGAAGTGCGCGTCGTGGCGAGGAGCGTCTACTCGCGTGTAGCTCCGCCTCTTTTTTTTTGGTGTCGCTTCAAGAGAAAAAAGGAAATAAAACATCCCCAGAATTGGCTTTTCCAACGTTTTGAAAGAAAGGGAACCCCTAACAACGGAGCACTAGATTCAATATGTTTTTGGGGTACTTTTTGAAACTTCTTGCAAAGTTATAAAGTAGCTTCAGAGATGTATCTTTTTTTATAATAAGGTGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAATCTCCTATTTTCGAAATTTCGGAATCATTCCATTTTCCCATCACAAAAWTGTCGAAAATTAAGAAAAATTGACAAAAAAATTTCGAAAACGCAAAACAAGGTTAAAAGTTAGTCCGCTCAAGACCTGCAAGCAAATTTTGCGCATGCGCCTTCGACATACCGTAGTCCGAAAATCTTCAATGCCGAAACAAAGCTTCAAAAATGTTTCCGTCAAAATTTTTTCGGAATTCCGATATCTGTTTTTAACATCTCTATTTCTCCGAGTAAGGTATGTTCTAAGTTTCAGTAAACACTCAAATATATTCAAATTTCAAAATCGAAAGTGTCATTCAATGTTTGGTGTCATTCCTTATTGTCACGCGACGCAACGTTTAGTGCGTCACCTTTATTATCGATAAGTTCACCAAAATACTTCATGAGCTCACCTCATCTGGCCGTGGAATATTTAGAGGGAACATTTTGGTATGTTCTTCTGAAATCTATTAGGATATGTGTATGACGAATAGAATGATGACAACAGTCACAAGCTTCTTAGAACTTAACAAATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCAAAGTTATAAAGTAGCTTCAG</pcr_primer_p1>
		<pcr_primer_p2>GGAGAAATAGAGATGTTAAAAACAG</pcr_primer_p2>
		<pcr_amplicon_size>356</pcr_amplicon_size>
		<canonical_amplicon>TGCAAAGTTATAAAGTAGCTTCAGAGATGTATCTTTTTTTATAATAAGGTGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAATCTCCTATTTTCGAAATTTCGGAATCATTCCATTTTCCCATCACAAAAATGTCGAAAATTAAGAAAAATTGACAAAAAAATTTCGAAAACGCAAAACAAGGTTAAAAGTTAGTCCGCTCAAGACCTGCAAGCAAATTTTGCGCATGCGCCTTCGACATACCGTAGTCCGAAAATCTTCAATGCCGAAACAAAGCTTCAAAAATGTTTCCGTCAAAATTTTTTCGGAATTCCGATATCTGTTTTTAACATCTCTATTTCTCC</canonical_amplicon>
		<polymorphic_amplicon>TGCAAAGTTATAAAGTAGCTTCAGAGATGTATCTTTTTTTATAATAAGGTGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAATCTCCTATTTTCGAAATTTCGGAATCATTCCATTTTCCCATCACAAAAWTGTCGAAAATTAAGAAAAATTGACAAAAAAATTTCGAAAACGCAAAACAAGGTTAAAAGTTAGTCCGCTCAAGACCTGCAAGCAAATTTTGCGCATGCGCCTTCGACATACCGTAGTCCGAAAATCTTCAATGCCGAAACAAAGCTTCAAAAATGTTTCCGTCAAAATTTTTTCGGAATTCCGATATCTGTTTTTAACATCTCTATTTCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36728</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>325423</contig_pos>
        <strand></strand>
        <context>AACACTCAAA[T/A]ATATTCAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCTCTATTTCTCCGAGTAAGGTATGTTCTAAGTTTCAGTAAACACTCAAA</left_flank>
        <right_flank>ATATTCAAATTTCAAAATCGAAAGTGTCATTCAATGTTTGGTGTCATTCC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAAACATCCCCAGAATTGGCTTTTCCAACGTTTTGAAAGAAAGGGAACCCCTAACAACGGAGCACTAGATTCAATATGTTTTTGGGGTACTTTTTGAAACTTCTTGCAAAGTTATAAAGTAGCTTCAGAGATGTATCTTTTTTTATAATAAGGTGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAATCTCCTATTTTCGAAATTTCGGAATCATTCCATTTTCCCATCACAAAAATGTCGAAAATTAAGAAAAATTGACAAAAAAATTTCGAAAACGCAAAACAAGGTTAAAAGTTAGTCCGCTCAAGACCTGCAAGCAAATTTTGCGCATGCGCCTTCGACATACCGTAGTCCGAAAATCTTCAATGCCGAAACAAAGCTTCAAAAATGTTTCCGTCAAAATTTTTTCGGAATTCCGATATCTGTTTTTAACATCTCTATTTCTCCGAGTAAGGTATGTTCTAAGTTTCAGTAAACACTCAAATATATTCAAATTTCAAAATCGAAAGTGTCATTCAATGTTTGGTGTCATTCCTTATTGTCACGCGACGCAACGTTTAGTGCGTCACCTTTATTATCGATAAGTTCACCAAAATACTTCATGAGCTCACCTCATCTGGCCGTGGAATATTTAGAGGGAACATTTTGGTATGTTCTTCTGAAATCTATTAGGATATGTGTATGACGAATAGAATGATGACAACAGTCACAAGCTTCTTAGAACTTAACAAATCACCTTTTTTATTGACCGTGAGCTTTTGACGTCATTCAGTAAGTCTCACTAATTGGGAGATGTGCGGTTTCTGAGTGTCCGACTATAGTATGAATAATGTCACCGTCTACCTGAAGAAGTGAAAAGATAAATGTTATTCAGTTTGAGAGAAATGAGAAGAATCTAATTGCTCCGGCAACTCGTGGTGTTGAATTTAGTCCGTTGGGGTAAGTCACTTGACTCCTCATACTAGAGAGTATTTTGAAATTTGTT</canonical>
            <polymorphic>ATAAAACATCCCCAGAATTGGCTTTTCCAACGTTTTGAAAGAAAGGGAACCCCTAACAACGGAGCACTAGATTCAATATGTTTTTGGGGTACTTTTTGAAACTTCTTGCAAAGTTATAAAGTAGCTTCAGAGATGTATCTTTTTTTATAATAAGGTGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAATCTCCTATTTTCGAAATTTCGGAATCATTCCATTTTCCCATCACAAAAATGTCGAAAATTAAGAAAAATTGACAAAAAAATTTCGAAAACGCAAAACAAGGTTAAAAGTTAGTCCGCTCAAGACCTGCAAGCAAATTTTGCGCATGCGCCTTCGACATACCGTAGTCCGAAAATCTTCAATGCCGAAACAAAGCTTCAAAAATGTTTCCGTCAAAATTTTTTCGGAATTCCGATATCTGTTTTTAACATCTCTATTTCTCCGAGTAAGGTATGTTCTAAGTTTCAGTAAACACTCAAAWATATTCAAATTTCAAAATCGAAAGTGTCATTCAATGTTTGGTGTCATTCCTTATTGTCACGCGACGCAACGTTTAGTGCGTCACCTTTATTATCGATAAGTTCACCAAAATACTTCATGAGCTCACCTCATCTGGCCGTGGAATATTTAGAGGGAACATTTTGGTATGTTCTTCTGAAATCTATTAGGATATGTGTATGACGAATAGAATGATGACAACAGTCACAAGCTTCTTAGAACTTAACAAATCACCTTTTTTATTGACCGTGAGCTTTTGACGTCATTCAGTAAGTCTCACTAATTGGGAGATGTGCGGTTTCTGAGTGTCCGACTATAGTATGAATAATGTCACCGTCTACCTGAAGAAGTGAAAAGATAAATGTTATTCAGTTTGAGAGAAATGAGAAGAATCTAATTGCTCCGGCAACTCGTGGTGTTGAATTTAGTCCGTTGGGGTAAGTCACTTGACTCCTCATACTAGAGAGTATTTTGAAATTTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTTTTTAACATCTCTATTTCTCC</pcr_primer_p1>
		<pcr_primer_p2>GATTTCAGAAGAACATACCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CTGTTTTTAACATCTCTATTTCTCCGAGTAAGGTATGTTCTAAGTTTCAGTAAACACTCAAATATATTCAAATTTCAAAATCGAAAGTGTCATTCAATGTTTGGTGTCATTCCTTATTGTCACGCGACGCAACGTTTAGTGCGTCACCTTTATTATCGATAAGTTCACCAAAATACTTCATGAGCTCACCTCATCTGGCCGTGGAATATTTAGAGGGAACATTTTGGTATGTTCTTCTGAAATC</canonical_amplicon>
		<polymorphic_amplicon>CTGTTTTTAACATCTCTATTTCTCCGAGTAAGGTATGTTCTAAGTTTCAGTAAACACTCAAAWATATTCAAATTTCAAAATCGAAAGTGTCATTCAATGTTTGGTGTCATTCCTTATTGTCACGCGACGCAACGTTTAGTGCGTCACCTTTATTATCGATAAGTTCACCAAAATACTTCATGAGCTCACCTCATCTGGCCGTGGAATATTTAGAGGGAACATTTTGGTATGTTCTTCTGAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36729</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>325456</contig_pos>
        <strand>+</strand>
        <context>AGTGTCATTC[G/T]ATGTTTGGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCAGTAAACACTCAAATATATTCAAATTTCAAAATCGAAAGTGTCATTC</left_flank>
        <right_flank>ATGTTTGGTGTCATTCCTTATTGTCACGCGACGCAACGTTTAGTGCGTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAAAGAAAGGGAACCCCTAACAACGGAGCACTAGATTCAATATGTTTTTGGGGTACTTTTTGAAACTTCTTGCAAAGTTATAAAGTAGCTTCAGAGATGTATCTTTTTTTATAATAAGGTGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAATCTCCTATTTTCGAAATTTCGGAATCATTCCATTTTCCCATCACAAAAATGTCGAAAATTAAGAAAAATTGACAAAAAAATTTCGAAAACGCAAAACAAGGTTAAAAGTTAGTCCGCTCAAGACCTGCAAGCAAATTTTGCGCATGCGCCTTCGACATACCGTAGTCCGAAAATCTTCAATGCCGAAACAAAGCTTCAAAAATGTTTCCGTCAAAATTTTTTCGGAATTCCGATATCTGTTTTTAACATCTCTATTTCTCCGAGTAAGGTATGTTCTAAGTTTCAGTAAACACTCAAATATATTCAAATTTCAAAATCGAAAGTGTCATTCAATGTTTGGTGTCATTCCTTATTGTCACGCGACGCAACGTTTAGTGCGTCACCTTTATTATCGATAAGTTCACCAAAATACTTCATGAGCTCACCTCATCTGGCCGTGGAATATTTAGAGGGAACATTTTGGTATGTTCTTCTGAAATCTATTAGGATATGTGTATGACGAATAGAATGATGACAACAGTCACAAGCTTCTTAGAACTTAACAAATCACCTTTTTTATTGACCGTGAGCTTTTGACGTCATTCAGTAAGTCTCACTAATTGGGAGATGTGCGGTTTCTGAGTGTCCGACTATAGTATGAATAATGTCACCGTCTACCTGAAGAAGTGAAAAGATAAATGTTATTCAGTTTGAGAGAAATGAGAAGAATCTAATTGCTCCGGCAACTCGTGGTGTTGAATTTAGTCCGTTGGGGTAAGTCACTTGACTCCTCATACTAGAGAGTATTTTGAAATTTGTTGTTGTACTGAGAAGAGACATCTAGCAAAAAATC</canonical>
            <polymorphic>TTTGAAAGAAAGGGAACCCCTAACAACGGAGCACTAGATTCAATATGTTTTTGGGGTACTTTTTGAAACTTCTTGCAAAGTTATAAAGTAGCTTCAGAGATGTATCTTTTTTTATAATAAGGTGGTGTAACAGGAATAGCCTTTTAGGAAGTTTTCGGGATTTCAAAATCTCCTATTTTCGAAATTTCGGAATCATTCCATTTTCCCATCACAAAAATGTCGAAAATTAAGAAAAATTGACAAAAAAATTTCGAAAACGCAAAACAAGGTTAAAAGTTAGTCCGCTCAAGACCTGCAAGCAAATTTTGCGCATGCGCCTTCGACATACCGTAGTCCGAAAATCTTCAATGCCGAAACAAAGCTTCAAAAATGTTTCCGTCAAAATTTTTTCGGAATTCCGATATCTGTTTTTAACATCTCTATTTCTCCGAGTAAGGTATGTTCTAAGTTTCAGTAAACACTCAAATATATTCAAATTTCAAAATCGAAAGTGTCATTCKATGTTTGGTGTCATTCCTTATTGTCACGCGACGCAACGTTTAGTGCGTCACCTTTATTATCGATAAGTTCACCAAAATACTTCATGAGCTCACCTCATCTGGCCGTGGAATATTTAGAGGGAACATTTTGGTATGTTCTTCTGAAATCTATTAGGATATGTGTATGACGAATAGAATGATGACAACAGTCACAAGCTTCTTAGAACTTAACAAATCACCTTTTTTATTGACCGTGAGCTTTTGACGTCATTCAGTAAGTCTCACTAATTGGGAGATGTGCGGTTTCTGAGTGTCCGACTATAGTATGAATAATGTCACCGTCTACCTGAAGAAGTGAAAAGATAAATGTTATTCAGTTTGAGAGAAATGAGAAGAATCTAATTGCTCCGGCAACTCGTGGTGTTGAATTTAGTCCGTTGGGGTAAGTCACTTGACTCCTCATACTAGAGAGTATTTTGAAATTTGTTGTTGTACTGAGAAGAGACATCTAGCAAAAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTTTTTAACATCTCTATTTCTCC</pcr_primer_p1>
		<pcr_primer_p2>GATTTCAGAAGAACATACCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CTGTTTTTAACATCTCTATTTCTCCGAGTAAGGTATGTTCTAAGTTTCAGTAAACACTCAAATATATTCAAATTTCAAAATCGAAAGTGTCATTCAATGTTTGGTGTCATTCCTTATTGTCACGCGACGCAACGTTTAGTGCGTCACCTTTATTATCGATAAGTTCACCAAAATACTTCATGAGCTCACCTCATCTGGCCGTGGAATATTTAGAGGGAACATTTTGGTATGTTCTTCTGAAATC</canonical_amplicon>
		<polymorphic_amplicon>CTGTTTTTAACATCTCTATTTCTCCGAGTAAGGTATGTTCTAAGTTTCAGTAAACACTCAAATATATTCAAATTTCAAAATCGAAAGTGTCATTCKATGTTTGGTGTCATTCCTTATTGTCACGCGACGCAACGTTTAGTGCGTCACCTTTATTATCGATAAGTTCACCAAAATACTTCATGAGCTCACCTCATCTGGCCGTGGAATATTTAGAGGGAACATTTTGGTATGTTCTTCTGAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36730</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>360194</contig_pos>
        <strand>+</strand>
        <context>TTTGAAAAGT[C/T]AAAAAAAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATTCAGCAGATTTATGTATGAAGAAGAATGAAGCTAATTTGAAAAGT</left_flank>
        <right_flank>AAAAAAAATGTTTTTTGCAAGATGAGATCTGTTTGAACTATTTTAGGCGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTCTAGTGGGCCCAAACCAACTTTCTCCGATTTCAAAATTCCATTTTTCATTTCTCCTCATTTCCATTTCATTCATTCACGTCATGTGTTTTATGAGTCTAACAACTAACACATTCCGGGATGAATCGAAAAAAAAGAAGTGTGAGGGTGATGTAAAGATTCATATAAACTCTGGTAGTCTACCACCACCCATTTCACAACTGACATCAAAACACAAAAGATGCAGTTCTTTATGGCTGATCTTTCTCCCAAAATTTTATTGGAATCTTAACTGGTCGTTATTTTCAATTATGAATAATTTCAAACTTAAAGTAGATGAAAAAATTAGAATCGTGATGGAAACACCAATAGCATAACTAACCAGTTTTAATCGGCCGGCAATAAAATATAAATGAACAAGAAGCAAAAAAGTGTACTGGATCACAGACAGGAACCTTTACTAAAAGCAAAATTCAGCAGATTTATGTATGAAGAAGAATGAAGCTAATTTGAAAAGTAAAAAAAAATGTTTTTTGCAAGATGAGATCTGTTTGAACTATTTTAGGCGTTTTTTTCACTGTTCACTGATTAATTACTTGTTTGAAACATACAGTAAATGTCAATAAATATACAAAAACGTTTTTTTTTACAGTTGATTTTTGGTAATTTGCAGGTCTCTGAAGCCCGACTCTCAAGTTTCCGATCACTTTCAAGTTTCTGGAAAGGGTAAAACAGATCTGGAGTGGAAACTTTCCAATCACAGAATTTTTCGAATAATCCTAGTTTTTCAGCTGTTTGCCGATTTTTGAAAGACATCTCCATATAAACCAGTTTTGTACTAAAAACGTGAAAAATCAGGTGTTTTTCATAAATTGGTGCGTAATTAAAAAACTTGTAATTTTCAAAAAACTCTGTGAATGTTTCCAATCTAGAGCTGTTTCACACTTTTCAGAACTTTCAAAGAAATCAGAAGCTCGACAATCGAACTCTAGACTCCTGAAAATGGTCAAAATAGCCAA</canonical>
            <polymorphic>TCTTCTAGTGGGCCCAAACCAACTTTCTCCGATTTCAAAATTCCATTTTTCATTTCTCCTCATTTCCATTTCATTCATTCACGTCATGTGTTTTATGAGTCTAACAACTAACACATTCCGGGATGAATCGAAAAAAAAGAAGTGTGAGGGTGATGTAAAGATTCATATAAACTCTGGTAGTCTACCACCACCCATTTCACAACTGACATCAAAACACAAAAGATGCAGTTCTTTATGGCTGATCTTTCTCCCAAAATTTTATTGGAATCTTAACTGGTCGTTATTTTCAATTATGAATAATTTCAAACTTAAAGTAGATGAAAAAATTAGAATCGTGATGGAAACACCAATAGCATAACTAACCAGTTTTAATCGGCCGGCAATAAAATATAAATGAACAAGAAGCAAAAAAGTGTACTGGATCACAGACAGGAACCTTTACTAAAAGCAAAATTCAGCAGATTTATGTATGAAGAAGAATGAAGCTAATTTGAAAAGTYAAAAAAAATGTTTTTTGCAAGATGAGATCTGTTTGAACTATTTTAGGCGTTTTTTTCACTGTTCACTGATTAATTACTTGTTTGAAACATACAGTAAATGTCAATAAATATACAAAAACGTTTTTTTTTACAGTTGATTTTTGGTAATTTGCAGGTCTCTGAAGCCCGACTCTCAAGTTTCCGATCACTTTCAAGTTTCTGGAAAGGGTAAAACAGATCTGGAGTGGAAACTTTCCAATCACAGAATTTTTCGAATAATCCTAGTTTTTCAGCTGTTTGCCGATTTTTGAAAGACATCTCCATATAAACCAGTTTTGTACTAAAAACGTGAAAAATCAGGTGTTTTTCATAAATTGGTGCGTAATTAAAAAACTTGTAATTTTCAAAAAACTCTGTGAATGTTTCCAATCTAGAGCTGTTTCACACTTTTCAGAACTTTCAAAGAAATCAGAAGCTCGACAATCGAACTCTAGACTCCTGAAAATGGTCAAAATAGCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAACACCAATAGCATAACTAA</pcr_primer_p1>
		<pcr_primer_p2>CAAACAAGTAATTAATCAGTGAACA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GGAAACACCAATAGCATAACTAACCAGTTTTAATCGGCCGGCAATAAAATATAAATGAACAAGAAGCAAAAAAGTGTACTGGATCACAGACAGGAACCTTTACTAAAAGCAAAATTCAGCAGATTTATGTATGAAGAAGAATGAAGCTAATTTGAAAAGTAAAAAAAAATGTTTTTTGCAAGATGAGATCTGTTTGAACTATTTTAGGCGTTTTTTTCACTGTTCACTGATTAATTACTTGTTTG</canonical_amplicon>
		<polymorphic_amplicon>GGAAACACCAATAGCATAACTAACCAGTTTTAATCGGCCGGCAATAAAATATAAATGAACAAGAAGCAAAAAAGTGTACTGGATCACAGACAGGAACCTTTACTAAAAGCAAAATTCAGCAGATTTATGTATGAAGAAGAATGAAGCTAATTTGAAAAGTYAAAAAAAATGTTTTTTGCAAGATGAGATCTGTTTGAACTATTTTAGGCGTTTTTTTCACTGTTCACTGATTAATTACTTGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36731</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>360224</contig_pos>
        <strand></strand>
        <context>AGATGAGATC[T/C]GTTTGAACTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATGAAGCTAATTTGAAAAGTAAAAAAAAATGTTTTTTGCAAGATGAGATC</left_flank>
        <right_flank>GTTTGAACTATTTTAGGCGTTTTTTTCACTGTTCACTGATTAATTACTTG</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTCAAAATTCCATTTTTCATTTCTCCTCATTTCCATTTCATTCATTCACGTCATGTGTTTTATGAGTCTAACAACTAACACATTCCGGGATGAATCGAAAAAAAAGAAGTGTGAGGGTGATGTAAAGATTCATATAAACTCTGGTAGTCTACCACCACCCATTTCACAACTGACATCAAAACACAAAAGATGCAGTTCTTTATGGCTGATCTTTCTCCCAAAATTTTATTGGAATCTTAACTGGTCGTTATTTTCAATTATGAATAATTTCAAACTTAAAGTAGATGAAAAAATTAGAATCGTGATGGAAACACCAATAGCATAACTAACCAGTTTTAATCGGCCGGCAATAAAATATAAATGAACAAGAAGCAAAAAAGTGTACTGGATCACAGACAGGAACCTTTACTAAAAGCAAAATTCAGCAGATTTATGTATGAAGAAGAATGAAGCTAATTTGAAAAGTAAAAAAAAATGTTTTTTGCAAGATGAGATCTGTTTGAACTATTTTAGGCGTTTTTTTCACTGTTCACTGATTAATTACTTGTTTGAAACATACAGTAAATGTCAATAAATATACAAAAACGTTTTTTTTTACAGTTGATTTTTGGTAATTTGCAGGTCTCTGAAGCCCGACTCTCAAGTTTCCGATCACTTTCAAGTTTCTGGAAAGGGTAAAACAGATCTGGAGTGGAAACTTTCCAATCACAGAATTTTTCGAATAATCCTAGTTTTTCAGCTGTTTGCCGATTTTTGAAAGACATCTCCATATAAACCAGTTTTGTACTAAAAACGTGAAAAATCAGGTGTTTTTCATAAATTGGTGCGTAATTAAAAAACTTGTAATTTTCAAAAAACTCTGTGAATGTTTCCAATCTAGAGCTGTTTCACACTTTTCAGAACTTTCAAAGAAATCAGAAGCTCGACAATCGAACTCTAGACTCCTGAAAATGGTCAAAATAGCCAAAACTGAAAAATTCGTTTTTCTATTTTTTTT</canonical>
            <polymorphic>GATTTCAAAATTCCATTTTTCATTTCTCCTCATTTCCATTTCATTCATTCACGTCATGTGTTTTATGAGTCTAACAACTAACACATTCCGGGATGAATCGAAAAAAAAGAAGTGTGAGGGTGATGTAAAGATTCATATAAACTCTGGTAGTCTACCACCACCCATTTCACAACTGACATCAAAACACAAAAGATGCAGTTCTTTATGGCTGATCTTTCTCCCAAAATTTTATTGGAATCTTAACTGGTCGTTATTTTCAATTATGAATAATTTCAAACTTAAAGTAGATGAAAAAATTAGAATCGTGATGGAAACACCAATAGCATAACTAACCAGTTTTAATCGGCCGGCAATAAAATATAAATGAACAAGAAGCAAAAAAGTGTACTGGATCACAGACAGGAACCTTTACTAAAAGCAAAATTCAGCAGATTTATGTATGAAGAAGAATGAAGCTAATTTGAAAAGTAAAAAAAAATGTTTTTTGCAAGATGAGATCYGTTTGAACTATTTTAGGCGTTTTTTTCACTGTTCACTGATTAATTACTTGTTTGAAACATACAGTAAATGTCAATAAATATACAAAAACGTTTTTTTTTACAGTTGATTTTTGGTAATTTGCAGGTCTCTGAAGCCCGACTCTCAAGTTTCCGATCACTTTCAAGTTTCTGGAAAGGGTAAAACAGATCTGGAGTGGAAACTTTCCAATCACAGAATTTTTCGAATAATCCTAGTTTTTCAGCTGTTTGCCGATTTTTGAAAGACATCTCCATATAAACCAGTTTTGTACTAAAAACGTGAAAAATCAGGTGTTTTTCATAAATTGGTGCGTAATTAAAAAACTTGTAATTTTCAAAAAACTCTGTGAATGTTTCCAATCTAGAGCTGTTTCACACTTTTCAGAACTTTCAAAGAAATCAGAAGCTCGACAATCGAACTCTAGACTCCTGAAAATGGTCAAAATAGCCAAAACTGAAAAATTCGTTTTTCTATTTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>495 315 190</canonical_bands>
                <polymorphic_bands>685 315</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>495 315 190</canonical_bands>
                <polymorphic_bands>685 315</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGAATGAAGCTAATTTGAAAAG</pcr_primer_p1>
		<pcr_primer_p2>TGTCAATAACTGGAGCTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>595</pcr_amplicon_size>
		<canonical_amplicon>GAAGAATGAAGCTAATTTGAAAAGTAAAAAAAAATGTTTTTTGCAAGATGAGATCTGTTTGAACTATTTTAGGCGT</canonical_amplicon>
		<polymorphic_amplicon>GAAGAATGAAGCTAATTTGAAAAGTAAAAAAAAATGTTTTTTGCAAGATGAGATCYGTTTGAACTATTTTAGGCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36732</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>360351</contig_pos>
        <strand></strand>
        <context>atttgcaggt[C/G]tctgaagccc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATATACAAAAACGTTTTTTTTTACAGTTGATTTTTGGTAATTTGCAGGT</left_flank>
        <right_flank>TCTGAAGCCCGACTCTCAAGTTTCCGATCACTTTCAAGTTTCTGGAAAGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGATTCATATAAACTCTGGTAGTCTACCACCACCCATTTCACAACTGACATCAAAACACAAAAGATGCAGTTCTTTATGGCTGATCTTTCTCCCAAAATTTTATTGGAATCTTAACTGGTCGTTATTTTCAATTATGAATAATTTCAAACTTAAAGTAGATGAAAAAATTAGAATCGTGATGGAAACACCAATAGCATAACTAACCAGTTTTAATCGGCCGGCAATAAAATATAAATGAACAAGAAGCAAAAAAGTGTACTGGATCACAGACAGGAACCTTTACTAAAAGCAAAATTCAGCAGATTTATGTATGAAGAAGAATGAAGCTAATTTGAAAAGTAAAAAAAAATGTTTTTTGCAAGATGAGATCTGTTTGAACTATTTTAGGCGTTTTTTTCACTGTTCACTGATTAATTACTTGTTTGAAACATACAGTAAATGTCAATAAATATACAAAAACGTTTTTTTTTACAGTTGATTTTTGGTAATTTGCAGGTCTCTGAAGCCCGACTCTCAAGTTTCCGATCACTTTCAAGTTTCTGGAAAGGGTAAAACAGATCTGGAGTGGAAACTTTCCAATCACAGAATTTTTCGAATAATCCTAGTTTTTCAGCTGTTTGCCGATTTTTGAAAGACATCTCCATATAAACCAGTTTTGTACTAAAAACGTGAAAAATCAGGTGTTTTTCATAAATTGGTGCGTAATTAAAAAACTTGTAATTTTCAAAAAACTCTGTGAATGTTTCCAATCTAGAGCTGTTTCACACTTTTCAGAACTTTCAAAGAAATCAGAAGCTCGACAATCGAACTCTAGACTCCTGAAAATGGTCAAAATAGCCAAAACTGAAAAATTCGTTTTTCTATTTTTTTTTATTGACTGGTACTGTAATTCAAGCTCCAGTTATTGACATCTTTCTAGTCACATTCCAGGCAAATCATATTTTAAATCGTTGAAAAATTCAGTAATCGGTGGTTTCATGAAAATTTATTTCATTTAA</canonical>
            <polymorphic>AAGATTCATATAAACTCTGGTAGTCTACCACCACCCATTTCACAACTGACATCAAAACACAAAAGATGCAGTTCTTTATGGCTGATCTTTCTCCCAAAATTTTATTGGAATCTTAACTGGTCGTTATTTTCAATTATGAATAATTTCAAACTTAAAGTAGATGAAAAAATTAGAATCGTGATGGAAACACCAATAGCATAACTAACCAGTTTTAATCGGCCGGCAATAAAATATAAATGAACAAGAAGCAAAAAAGTGTACTGGATCACAGACAGGAACCTTTACTAAAAGCAAAATTCAGCAGATTTATGTATGAAGAAGAATGAAGCTAATTTGAAAAGTAAAAAAAAATGTTTTTTGCAAGATGAGATCTGTTTGAACTATTTTAGGCGTTTTTTTCACTGTTCACTGATTAATTACTTGTTTGAAACATACAGTAAATGTCAATAAATATACAAAAACGTTTTTTTTTACAGTTGATTTTTGGTAATTTGCAGGTSTCTGAAGCCCGACTCTCAAGTTTCCGATCACTTTCAAGTTTCTGGAAAGGGTAAAACAGATCTGGAGTGGAAACTTTCCAATCACAGAATTTTTCGAATAATCCTAGTTTTTCAGCTGTTTGCCGATTTTTGAAAGACATCTCCATATAAACCAGTTTTGTACTAAAAACGTGAAAAATCAGGTGTTTTTCATAAATTGGTGCGTAATTAAAAAACTTGTAATTTTCAAAAAACTCTGTGAATGTTTCCAATCTAGAGCTGTTTCACACTTTTCAGAACTTTCAAAGAAATCAGAAGCTCGACAATCGAACTCTAGACTCCTGAAAATGGTCAAAATAGCCAAAACTGAAAAATTCGTTTTTCTATTTTTTTTTATTGACTGGTACTGTAATTCAAGCTCCAGTTATTGACATCTTTCTAGTCACATTCCAGGCAAATCATATTTTAAATCGTTGAAAAATTCAGTAATCGGTGGTTTCATGAAAATTTATTTCATTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTCACTGATTAATTACTTGTTTG</pcr_primer_p1>
		<pcr_primer_p2>TGTCAATAACTGGAGCTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>510</pcr_amplicon_size>
		<canonical_amplicon>TGTTCACTGATTAATTACTTGTTTGAAACATACAGTAAATGTCAATAAATATACAAAAACGTTTTTTTTTACAGTTGATTTTTGGTAATTTGCAGGTCTCTGAAGCCCGACTCTCAAGTTTCCGATCACTTTCAAGTTTCTGGAAAGGGTAAAACAGATCTGGAGTGGAAACTTTCCAATCACAGAATTTTTCGAATAATCCTAGTTTTTCAGCTGTTTGCCGATTTTTGAAAGACATCTCCATATAAACCAGTTTTGTACTAAAAACGTGAAAAATCAGGTGTTTTTCATAAATTGGTGCGTAATTAAAAAACTTGTAATTTTCAAAAAACTCTGTGAATGTTTCCAATCTAGAGCTGTTTCACACTTTTCAGAACTTTCAAAGAAATCAGAAGCTCGACAATCGAACTCTAGACTCCTGAAAATGGTCAAAATAGCCAAAACTGAAAAATTCGTTTTTCTATTTTTTTTTATTGACTGGTACTGTAATTCAAGCTCCAGTTATTGACA</canonical_amplicon>
		<polymorphic_amplicon>TGTTCACTGATTAATTACTTGTTTGAAACATACAGTAAATGTCAATAAATATACAAAAACGTTTTTTTTTACAGTTGATTTTTGGTAATTTGCAGGTSTCTGAAGCCCGACTCTCAAGTTTCCGATCACTTTCAAGTTTCTGGAAAGGGTAAAACAGATCTGGAGTGGAAACTTTCCAATCACAGAATTTTTCGAATAATCCTAGTTTTTCAGCTGTTTGCCGATTTTTGAAAGACATCTCCATATAAACCAGTTTTGTACTAAAAACGTGAAAAATCAGGTGTTTTTCATAAATTGGTGCGTAATTAAAAAACTTGTAATTTTCAAAAAACTCTGTGAATGTTTCCAATCTAGAGCTGTTTCACACTTTTCAGAACTTTCAAAGAAATCAGAAGCTCGACAATCGAACTCTAGACTCCTGAAAATGGTCAAAATAGCCAAAACTGAAAAATTCGTTTTTCTATTTTTTTTTATTGACTGGTACTGTAATTCAAGCTCCAGTTATTGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36733</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>360843</contig_pos>
        <strand>+</strand>
        <context>GAAAATTTAT[C/T]TCATTTAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTAAATCGTTGAAAAATTCAGTAATCGGTGGTTTCATGAAAATTTAT</left_flank>
        <right_flank>TCATTTAACTGATGGAAGTTTGGATAAAATTAGCTTGCTTAGCTTATCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCAGGTCTCTGAAGCCCGACTCTCAAGTTTCCGATCACTTTCAAGTTTCTGGAAAGGGTAAAACAGATCTGGAGTGGAAACTTTCCAATCACAGAATTTTTCGAATAATCCTAGTTTTTCAGCTGTTTGCCGATTTTTGAAAGACATCTCCATATAAACCAGTTTTGTACTAAAAACGTGAAAAATCAGGTGTTTTTCATAAATTGGTGCGTAATTAAAAAACTTGTAATTTTCAAAAAACTCTGTGAATGTTTCCAATCTAGAGCTGTTTCACACTTTTCAGAACTTTCAAAGAAATCAGAAGCTCGACAATCGAACTCTAGACTCCTGAAAATGGTCAAAATAGCCAAAACTGAAAAATTCGTTTTTCTATTTTTTTTTATTGACTGGTACTGTAATTCAAGCTCCAGTTATTGACATCTTTCTAGTCACATTCCAGGCAAATCATATTTTAAATCGTTGAAAAATTCAGTAATCGGTGGTTTCATGAAAATTTATTTCATTTAACTGATGGAAGTTTGGATAAAATTAGCTTGCTTAGCTTATCCGGATCCCAGCACAGTAAAAACTTAAGGACAAATTATAATACGCGCAAATCATCAATCTTTCGAAGTAAGAAATCGCAATGAGAAAGTTTAAATGAGAATTTTTCGGACTTCCCACTGAAAAATATTCAATATTATCTCACTGACTCTAAATCAAGTCCGTCTCGCAAAGATGCGAGTGCCAGTTCTCTAAAAAAATAGATGGGAAAAAGATTTATGAAGAGAATAGATCAACGGATCAAAAAGGAGAAAGGAGAGATGAAGCCAAAAGGGCATATTTTTCCGAGCCCCGCCAGTCACGCCCCTCCTCTTTGAAGACCCCTCTGGGCATACGTTAATTTGGGAGAGTAGTGAGAAACCCTAACGATATCTGAACTATTATTTTCGAGTAGTTGGTGGTTTTTATGGTGTTTGGAATTTATGAACCATGCAGAAATGACGTCAAGCTATAATT</canonical>
            <polymorphic>TGCAGGTCTCTGAAGCCCGACTCTCAAGTTTCCGATCACTTTCAAGTTTCTGGAAAGGGTAAAACAGATCTGGAGTGGAAACTTTCCAATCACAGAATTTTTCGAATAATCCTAGTTTTTCAGCTGTTTGCCGATTTTTGAAAGACATCTCCATATAAACCAGTTTTGTACTAAAAACGTGAAAAATCAGGTGTTTTTCATAAATTGGTGCGTAATTAAAAAACTTGTAATTTTCAAAAAACTCTGTGAATGTTTCCAATCTAGAGCTGTTTCACACTTTTCAGAACTTTCAAAGAAATCAGAAGCTCGACAATCGAACTCTAGACTCCTGAAAATGGTCAAAATAGCCAAAACTGAAAAATTCGTTTTTCTATTTTTTTTTATTGACTGGTACTGTAATTCAAGCTCCAGTTATTGACATCTTTCTAGTCACATTCCAGGCAAATCATATTTTAAATCGTTGAAAAATTCAGTAATCGGTGGTTTCATGAAAATTTATYTCATTTAACTGATGGAAGTTTGGATAAAATTAGCTTGCTTAGCTTATCCGGATCCCAGCACAGTAAAAACTTAAGGACAAATTATAATACGCGCAAATCATCAATCTTTCGAAGTAAGAAATCGCAATGAGAAAGTTTAAATGAGAATTTTTCGGACTTCCCACTGAAAAATATTCAATATTATCTCACTGACTCTAAATCAAGTCCGTCTCGCAAAGATGCGAGTGCCAGTTCTCTAAAAAAATAGATGGGAAAAAGATTTATGAAGAGAATAGATCAACGGATCAAAAAGGAGAAAGGAGAGATGAAGCCAAAAGGGCATATTTTTCCGAGCCCCGCCAGTCACGCCCCTCCTCTTTGAAGACCCCTCTGGGCATACGTTAATTTGGGAGAGTAGTGAGAAACCCTAACGATATCTGAACTATTATTTTCGAGTAGTTGGTGGTTTTTATGGTGTTTGGAATTTATGAACCATGCAGAAATGACGTCAAGCTATAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCCAGTTATTGACATCTTTC</pcr_primer_p1>
		<pcr_primer_p2>CGAAAAATTCTCATTTAAACTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTCCAGTTATTGACATCTTTCTAGTCACATTCCAGGCAAATCATATTTTAAATCGTTGAAAAATTCAGTAATCGGTGGTTTCATGAAAATTTATTTCATTTAACTGATGGAAGTTTGGATAAAATTAGCTTGCTTAGCTTATCCGGATCCCAGCACAGTAAAAACTTAAGGACAAATTATAATACGCGCAAATCATCAATCTTTCGAAGTAAGAAATCGCAATGAGAAAGTTTAAATGAGAATTTTTCG</canonical_amplicon>
		<polymorphic_amplicon>GCTCCAGTTATTGACATCTTTCTAGTCACATTCCAGGCAAATCATATTTTAAATCGTTGAAAAATTCAGTAATCGGTGGTTTCATGAAAATTTATYTCATTTAACTGATGGAAGTTTGGATAAAATTAGCTTGCTTAGCTTATCCGGATCCCAGCACAGTAAAAACTTAAGGACAAATTATAATACGCGCAAATCATCAATCTTTCGAAGTAAGAAATCGCAATGAGAAAGTTTAAATGAGAATTTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36734</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>367272</contig_pos>
        <strand></strand>
        <context>gaaagaaata[G/A]aaaagtggtc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAAACCGTTAACTTTGAGCCCATATATCTCGTTTTCTGTGAAAGAAATA</left_flank>
        <right_flank>AAAAGTGGTCAACTGACAAAATTATCATCATTTTATCAAAAATAATTTGT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAAGTTTTCCAAACGTCTTTCACATTTTTCGGAGTCCTTCACTTCGTCGTGTTTCTTCTTTGCTCGTCGCACCACAATAGACGAGAAGCGGATTCAGTTATCGAAAAGTGTCCCCAAGGGGCGAATTGACGAGATGCTCTCTCTTGCGGCAAAGACTACATAGAGCCTAGCTACTTTGTAGAAGAAGGGCCAAAAATTTTTGAAGACAACCGACCCACGATGCGCTACTAGTGGTGATGGTCTTCAAGTTTGGTAGAAAATATTGATATGTCAGGCTTCAAATATTCAAAAGACCAGTTGTTTTGTGATTCTAGAATATCTCTGGGACACACATCCGCACTCACTTGAATGTTCTTAAAAATTGAGAAAAAACATGAAGGACATACTTTTTTGAATAAACAACATATTCAGGATACCGTGAACAGTATAAAACAGAATGTCTTCTGAAAAACCGTTAACTTTGAGCCCATATATCTCGTTTTCTGTGAAAGAAATAGAAAAGTGGTCAACTGACAAAATTATCATCATTTTATCAAAAATAATTTGTCAGTTGACAGTTTTTGATATCTATCAAACGAGCCTAGATACGGTACCGATCAATAAGATTTACAAAAAGGTATTTTCCAGTTTATTTTCGGTGTTTAGACCATTTTCAGAAGTCTAGAACTTAGCTGTCAAGTTCTTGATCGCTTTGAAAATTGTGGAAGATGTGAAACCGACCTAGATTAAAAATTTTGGATTAATGAAACTTTTCGGAAATTCTTAGTTTCCCAGCTACTTGGAAATTCCTGAAGCGCAACTGTTTTTTCACATTTTCATTACAAAAACGTCCCAAATGGTGTTTTCAAGAAATCGGTAAATAGCTGAAAAACTAGGAATTTTCAAAATTTTCTGTGAATATTAAGGTTTGAATCTAGGTCAGCGTCAAACTTTCCAAAGTTTTCAAAGGATACTTGACCATCGAGTTCCAGACGTTTGAAAATGGTAAAAATCAACT</canonical>
            <polymorphic>TCAAAAGTTTTCCAAACGTCTTTCACATTTTTCGGAGTCCTTCACTTCGTCGTGTTTCTTCTTTGCTCGTCGCACCACAATAGACGAGAAGCGGATTCAGTTATCGAAAAGTGTCCCCAAGGGGCGAATTGACGAGATGCTCTCTCTTGCGGCAAAGACTACATAGAGCCTAGCTACTTTGTAGAAGAAGGGCCAAAAATTTTTGAAGACAACCGACCCACGATGCGCTACTAGTGGTGATGGTCTTCAAGTTTGGTAGAAAATATTGATATGTCAGGCTTCAAATATTCAAAAGACCAGTTGTTTTGTGATTCTAGAATATCTCTGGGACACACATCCGCACTCACTTGAATGTTCTTAAAAATTGAGAAAAAACATGAAGGACATACTTTTTTGAATAAACAACATATTCAGGATACCGTGAACAGTATAAAACAGAATGTCTTCTGAAAAACCGTTAACTTTGAGCCCATATATCTCGTTTTCTGTGAAAGAAATARAAAAGTGGTCAACTGACAAAATTATCATCATTTTATCAAAAATAATTTGTCAGTTGACAGTTTTTGATATCTATCAAACGAGCCTAGATACGGTACCGATCAATAAGATTTACAAAAAGGTATTTTCCAGTTTATTTTCGGTGTTTAGACCATTTTCAGAAGTCTAGAACTTAGCTGTCAAGTTCTTGATCGCTTTGAAAATTGTGGAAGATGTGAAACCGACCTAGATTAAAAATTTTGGATTAATGAAACTTTTCGGAAATTCTTAGTTTCCCAGCTACTTGGAAATTCCTGAAGCGCAACTGTTTTTTCACATTTTCATTACAAAAACGTCCCAAATGGTGTTTTCAAGAAATCGGTAAATAGCTGAAAAACTAGGAATTTTCAAAATTTTCTGTGAATATTAAGGTTTGAATCTAGGTCAGCGTCAAACTTTCCAAAGTTTTCAAAGGATACTTGACCATCGAGTTCCAGACGTTTGAAAATGGTAAAAATCAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTATAAAACAGAATGTCTTCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>AAGGAATTTTTGAGTTGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>633</pcr_amplicon_size>
		<canonical_amplicon>AGTATAAAACAGAATGTCTTCTGAAAAACCGTTAACTTTGAGCCCATATATCTCGTTTTCTGTGAAAGAAATAGAAAAGTGGTCAACTGACAAAA</canonical_amplicon>
		<polymorphic_amplicon>AGTATAAAACAGAATGTCTTCTGAAAAACCGTTAACTTTGAGCCCATATATCTCGTTTTCTGTGAAAGAAATARAAAAGTGGTCAACTGACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36735</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>371437</contig_pos>
        <strand></strand>
        <context>ATAAGAAaaa[C/T]attttactat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGTGTCAACTTCATGTCAATTAATCTTAGTTACTGAATATAAGAAAAA</left_flank>
        <right_flank>ATTTTACTATATGACTACTCTTTGATATCTTGTACAGAAATTGAGAAAAA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTTCTTAAAAGCAATTAGTTTCTCTCACCATCGTCACAGACAAAACAGAAATTATTGGAAACTCAAAAATTTTAATAATTGGACAAATGATAGAATACATAAACATCTTATAAAAATCATTATACCCCTAGAGATATGATAAAACAGTGAGTACTACAAGATGATAATTTTTTCAAAACTTTTTGTGGCCTATGAGCAAAGTAAACAAACCATAAAGGGCTTTGCCGGTTTTGCGGTCAGTGTCTTAATCATGAACAAGATACAATTTGCTATATTGTATAGAACTCGCTGAGTTATCATGTCTAGTTTAGTCGGTCGAAACATATTGAGATTGAAAGAAACTCTGGTAGAGCTGGAGCTTGCTTTGGATCCGTTCTCTAGAAAAAGCGTTTCCTAGGAAAATTGTTCATATAAGGTACTGTAACTAATTTGATAGAATGACGCAGTCAGTGTCAACTTCATGTCAATTAATCTTAGTTACTGAATATAAGAAAAACATTTTACTATATGACTACTCTTTGATATCTTGTACAGAAATTGAGAAAAATTGGCTCAAAACTAACGGTAAGGGAGAAGCCCTTCTTCAGGAGTGTTCACGTTATCAATTATTTTCAAAAGTTTATTGCATCAAAGGTTATTATTAGCCCGTATAGTTCTGAAAATTTCCTGCGAATTTGGGAAAATATACTGCTTTAAAACATAAACTTTCGCTAAATCCTGTGAGAATTATAGTTGTGAAGCGCCAGACAGATAACCTTTTTTGCCTTGTTCGCTCTTTGAACGATAAAGTATGATTTTTTCCTGCTCATTCATACATCGAAACAAGCCTGATCATTAGCATATGCTCATACAGTCATGCTTTTCTTGAAAATTACAGTCATACTTCCCTTGAAAAAAACTTTTTAGCTGAAAAAAATTAAGAATGAAATTTACCATGCAAGGTTTACTTTTCTTATTCCGGATCTTTTCTAGAAACTAGTCGCATACTCTTCCCATT</canonical>
            <polymorphic>TGTTTTCTTAAAAGCAATTAGTTTCTCTCACCATCGTCACAGACAAAACAGAAATTATTGGAAACTCAAAAATTTTAATAATTGGACAAATGATAGAATACATAAACATCTTATAAAAATCATTATACCCCTAGAGATATGATAAAACAGTGAGTACTACAAGATGATAATTTTTTCAAAACTTTTTGTGGCCTATGAGCAAAGTAAACAAACCATAAAGGGCTTTGCCGGTTTTGCGGTCAGTGTCTTAATCATGAACAAGATACAATTTGCTATATTGTATAGAACTCGCTGAGTTATCATGTCTAGTTTAGTCGGTCGAAACATATTGAGATTGAAAGAAACTCTGGTAGAGCTGGAGCTTGCTTTGGATCCGTTCTCTAGAAAAAGCGTTTCCTAGGAAAATTGTTCATATAAGGTACTGTAACTAATTTGATAGAATGACGCAGTCAGTGTCAACTTCATGTCAATTAATCTTAGTTACTGAATATAAGAAAAAYATTTTACTATATGACTACTCTTTGATATCTTGTACAGAAATTGAGAAAAATTGGCTCAAAACTAACGGTAAGGGAGAAGCCCTTCTTCAGGAGTGTTCACGTTATCAATTATTTTCAAAAGTTTATTGCATCAAAGGTTATTATTAGCCCGTATAGTTCTGAAAATTTCCTGCGAATTTGGGAAAATATACTGCTTTAAAACATAAACTTTCGCTAAATCCTGTGAGAATTATAGTTGTGAAGCGCCAGACAGATAACCTTTTTTGCCTTGTTCGCTCTTTGAACGATAAAGTATGATTTTTTCCTGCTCATTCATACATCGAAACAAGCCTGATCATTAGCATATGCTCATACAGTCATGCTTTTCTTGAAAATTACAGTCATACTTCCCTTGAAAAAAACTTTTTAGCTGAAAAAAATTAAGAATGAAATTTACCATGCAAGGTTTACTTTTCTTATTCCGGATCTTTTCTAGAAACTAGTCGCATACTCTTCCCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAATTTGATAGAATGACGCAGT</pcr_primer_p1>
		<pcr_primer_p2>CAGGAAATTTTCAGAACTATACG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTAATTTGATAGAATGACGCAGTCAGTGTCAACTTCATGTCAATTAATCTTAGTTACTGAATATAAGAAAAACATTTTACTATATGACTACTCTTTGATATCTTGTACAGAAATTGAGAAAAATTGGCTCAAAACTAACGGTAAGGGAGAAGCCCTTCTTCAGGAGTGTTCACGTTATCAATTATTTTCAAAAGTTTATTGCATCAAAGGTTATTATTAGCCCGTATAGTTCTGAAAATTTCCTG</canonical_amplicon>
		<polymorphic_amplicon>CTAATTTGATAGAATGACGCAGTCAGTGTCAACTTCATGTCAATTAATCTTAGTTACTGAATATAAGAAAAAYATTTTACTATATGACTACTCTTTGATATCTTGTACAGAAATTGAGAAAAATTGGCTCAAAACTAACGGTAAGGGAGAAGCCCTTCTTCAGGAGTGTTCACGTTATCAATTATTTTCAAAAGTTTATTGCATCAAAGGTTATTATTAGCCCGTATAGTTCTGAAAATTTCCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36736</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>386271</contig_pos>
        <strand></strand>
        <context>caatagaata[A/T]ccaataccaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAATACGTAAAATACGATACCACTCTTATAAAACCACTTCAATAGAATA</left_flank>
        <right_flank>CCAATACCAACTTTTAACTTTGAATTATTCTATCTTAGCTCCTGTGAAAG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGAGTCAAATACGTACATTCAAATGTTTTCCGGATTATTAGACCACTTGTTTGGTGAAAAGAGAAATTTAGGTGAAACGGCACAAAACGAACGTCATTGGAATTCATACGAACAAAATTATCATATTCGTAAAAAGGATGTTTTGGCCACCTTACGGAGTATTGTTGACAGATATTGTGCTGGTGAATGGTAATTTGCATACGATAATAGAACAATATGGATAGCTAATTGCAAATGAAGTGGGCGGGATCATTTTTGGAAAGGTTCGGTAAAATGTTTTTGTTCGGAATTCAGAGAAGAAAATTTTTTGTTGAGCGGTTTTAAAAGTGTTATTTTAGTCAAATTAGCTTGAAGTTGACATTCTCATTTTCCAATACTCATCAGACAGTTCCAATTTTTAAAAATTTATTTTAGAAAAAAAAACAGAATAGCTGTGAGGTATTTTATTTCAATACGTAAAATACGATACCACTCTTATAAAACCACTTCAATAGAATAACCAATACCAACTTTTAACTTTGAATTATTCTATCTTAGCTCCTGTGAAAGATACCAAAAAGTGGTAAACGGACAAAATGTTTATGGCATTATAATAAATGCTTTGTCAGTTGACCACTTTTAGATTTTTTAGACAAGAAGTGAGATGTAACTGCTCAAAATTGGCGCTTTGGTGGTATTATTTTATATCGTTTACGGTATCCTGAAAATGTTGTTGTTCATTGAAAAAGTCTGACATTCATGTAAACTTGGGATTACGATAGTTTGAACAAAACGTGTTAACTGAAATTACATAATATTTATTTTTTCAAACTTACCGTAAACCCTGTATTAGAAAAGCCCTCTAAATTTTAACTTCGAGACAATTTATCTCCTCGGTTCCTGTCAGAGATATGAAAACGGTGTCAACTAACAAATTGTTAATCATAATATTATAAACATTTTTTTCAGTTGACACGATTTTGATATCTCTTACAATAACCGAAATAAATCAAGTCAAAA</canonical>
            <polymorphic>TCGAGTCAAATACGTACATTCAAATGTTTTCCGGATTATTAGACCACTTGTTTGGTGAAAAGAGAAATTTAGGTGAAACGGCACAAAACGAACGTCATTGGAATTCATACGAACAAAATTATCATATTCGTAAAAAGGATGTTTTGGCCACCTTACGGAGTATTGTTGACAGATATTGTGCTGGTGAATGGTAATTTGCATACGATAATAGAACAATATGGATAGCTAATTGCAAATGAAGTGGGCGGGATCATTTTTGGAAAGGTTCGGTAAAATGTTTTTGTTCGGAATTCAGAGAAGAAAATTTTTTGTTGAGCGGTTTTAAAAGTGTTATTTTAGTCAAATTAGCTTGAAGTTGACATTCTCATTTTCCAATACTCATCAGACAGTTCCAATTTTTAAAAATTTATTTTAGAAAAAAAAACAGAATAGCTGTGAGGTATTTTATTTCAATACGTAAAATACGATACCACTCTTATAAAACCACTTCAATAGAATAWCCAATACCAACTTTTAACTTTGAATTATTCTATCTTAGCTCCTGTGAAAGATACCAAAAAGTGGTAAACGGACAAAATGTTTATGGCATTATAATAAATGCTTTGTCAGTTGACCACTTTTAGATTTTTTAGACAAGAAGTGAGATGTAACTGCTCAAAATTGGCGCTTTGGTGGTATTATTTTATATCGTTTACGGTATCCTGAAAATGTTGTTGTTCATTGAAAAAGTCTGACATTCATGTAAACTTGGGATTACGATAGTTTGAACAAAACGTGTTAACTGAAATTACATAATATTTATTTTTTCAAACTTACCGTAAACCCTGTATTAGAAAAGCCCTCTAAATTTTAACTTCGAGACAATTTATCTCCTCGGTTCCTGTCAGAGATATGAAAACGGTGTCAACTAACAAATTGTTAATCATAATATTATAAACATTTTTTTCAGTTGACACGATTTTGATATCTCTTACAATAACCGAAATAAATCAAGTCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTGTGAGGTATTTTATTTCAA</pcr_primer_p1>
		<pcr_primer_p2>CAATGAACAACAACATTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>293</pcr_amplicon_size>
		<canonical_amplicon>AGCTGTGAGGTATTTTATTTCAATACGTAAAATACGATACCACTCTTATAAAACCACTTCAATAGAATAACCAATACCAACTTTTAACTTTGAATTATTCTATCTTAGCTCCTGTGAAAGATACCAAAAAGTGGTAAACGGACAAAATGTTTATGGCATTATAATAAATGCTTTGTCAGTTGACCACTTTTAGATTTTTTAGACAAGAAGTGAGATGTAACTGCTCAAAATTGGCGCTTTGGTGGTATTATTTTATATCGTTTACGGTATCCTGAAAATGTTGTTGTTCATTG</canonical_amplicon>
		<polymorphic_amplicon>AGCTGTGAGGTATTTTATTTCAATACGTAAAATACGATACCACTCTTATAAAACCACTTCAATAGAATAWCCAATACCAACTTTTAACTTTGAATTATTCTATCTTAGCTCCTGTGAAAGATACCAAAAAGTGGTAAACGGACAAAATGTTTATGGCATTATAATAAATGCTTTGTCAGTTGACCACTTTTAGATTTTTTAGACAAGAAGTGAGATGTAACTGCTCAAAATTGGCGCTTTGGTGGTATTATTTTATATCGTTTACGGTATCCTGAAAATGTTGTTGTTCATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36737</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>388640</contig_pos>
        <strand></strand>
        <context>tcggctgaat[G/A]tgagtatcaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGAACGTGAGATTTCGCTTTGGAATTTTTTCATTTCTTTATCGGCTGAAT</left_flank>
        <right_flank>TGAGTATCAAAAGTACAACGATAAACTTTAAAAAACTTGTTTCGATTGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTGGTTAACGAACACTTCTTGATCACTTTTGGATTTTTCATGCACTTAGAATCATCCCTCATTAAAAACTTATGATGAAGAATGCCCAGTTTGCAAGTTTCATTATTTCATATGATCTTGTTTGCAGTTCCAAATCATGTTCTTGTTGCATTTCATTTTCTTAGAATAAAAACCAACTAATAATTTCTAATCAAATTTCACCTTGAACTACTCCTGTCACATTTATGGTTCCGGGTATTTTTGAAAACCAAACTCAATCAACCGGACTGATATGTTTCTAGCTTCATCTTCCACTTCATAAACAGAAAAAAAAATCTATAACATTGAGAGACTAATAAAAGCTAGTTCCTAACAACTTGCCGGAAACATCTACGACTTGATTCAATCATAAGATCATAAAATTGACTCACAACCGTCCAAAAGCGTTGGTCAGAAATAGCGCCACAGCGAACGTGAGATTTCGCTTTGGAATTTTTTCATTTCTTTATCGGCTGAATGTGAGTATCAAAAGTACAACGATAAACTTTAAAAAACTTGTTTCGATTGAAAATACACAGGTCGAATCGACGTCCAGTTTGAAAATATGAACTTTTGTCTGGCCTAAAAGTTATCCAGGCCGCAATTACTAACAATACGTTTTAGGCACCTAAACATGAATTCTGGACACCTGACAATGGATTTTGGACCCTTGCCTCCTTATTATTTTTTTTTTCCAGAATATCATTTCAACCCGCATTTTTATCAACTCGTGCTACCCAAGATTCCACAACACAAGTAATTCAATCACCAGCCCAAAAGCTTCCCCTCCATTTCCACGTTCCCCTCGTGCCCTTTCCAACTAGTCCTTTTAGGCTCCGCCCACTTTTCAAGATTACCTCTGATGGGCGGTGCACTTGTCGTCCTAGACTCTCCCTTCGTATAAAACAGCCCAGAGTAGCCAGATTAGACGTTACTCCATGGCCCGGCTAGGAGGCGGAGCTTCGATCCTTAAGACTTTC</canonical>
            <polymorphic>TATTGGTTAACGAACACTTCTTGATCACTTTTGGATTTTTCATGCACTTAGAATCATCCCTCATTAAAAACTTATGATGAAGAATGCCCAGTTTGCAAGTTTCATTATTTCATATGATCTTGTTTGCAGTTCCAAATCATGTTCTTGTTGCATTTCATTTTCTTAGAATAAAAACCAACTAATAATTTCTAATCAAATTTCACCTTGAACTACTCCTGTCACATTTATGGTTCCGGGTATTTTTGAAAACCAAACTCAATCAACCGGACTGATATGTTTCTAGCTTCATCTTCCACTTCATAAACAGAAAAAAAAATCTATAACATTGAGAGACTAATAAAAGCTAGTTCCTAACAACTTGCCGGAAACATCTACGACTTGATTCAATCATAAGATCATAAAATTGACTCACAACCGTCCAAAAGCGTTGGTCAGAAATAGCGCCACAGCGAACGTGAGATTTCGCTTTGGAATTTTTTCATTTCTTTATCGGCTGAATRTGAGTATCAAAAGTACAACGATAAACTTTAAAAAACTTGTTTCGATTGAAAATACACAGGTCGAATCGACGTCCAGTTTGAAAATATGAACTTTTGTCTGGCCTAAAAGTTATCCAGGCCGCAATTACTAACAATACGTTTTAGGCACCTAAACATGAATTCTGGACACCTGACAATGGATTTTGGACCCTTGCCTCCTTATTATTTTTTTTTTCCAGAATATCATTTCAACCCGCATTTTTATCAACTCGTGCTACCCAAGATTCCACAACACAAGTAATTCAATCACCAGCCCAAAAGCTTCCCCTCCATTTCCACGTTCCCCTCGTGCCCTTTCCAACTAGTCCTTTTAGGCTCCGCCCACTTTTCAAGATTACCTCTGATGGGCGGTGCACTTGTCGTCCTAGACTCTCCCTTCGTATAAAACAGCCCAGAGTAGCCAGATTAGACGTTACTCCATGGCCCGGCTAGGAGGCGGAGCTTCGATCCTTAAGACTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>156 116 106 91 85 74 54 45 35 33 29 29 21 19 19 16 15 15 13 11 11 5 2</canonical_bands>
                <polymorphic_bands>156 116 106 99 91 85 74 35 33 29 29 21 19 19 16 15 15 13 11 11 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGATCATAAAATTGACTCACAAC</pcr_primer_p1>
		<pcr_primer_p2>TAGGTGCCTAAAACGTATTGTTA</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>AAGATCATAAAATTGACTCACAACCGTCCAAAAGCGTTGGTCAGAAATAGCGCCACAGCGAACGTGAGATTTCGCTTTGGAATTTTTTCATTTCTTTATCGGCTGAATGTGAGTATCAAAAGTACAACGATAAACTTTAAAAAACTTGTTTCGATTGAAAATACACAGGTCGAATCGACGTCCAGTTTGAAAATATGAACTTTTGTCTGGCCTAAAAGTTATCCAGGCCGCAATTACTAACAATACGTTTTAGGCACCTA</canonical_amplicon>
		<polymorphic_amplicon>AAGATCATAAAATTGACTCACAACCGTCCAAAAGCGTTGGTCAGAAATAGCGCCACAGCGAACGTGAGATTTCGCTTTGGAATTTTTTCATTTCTTTATCGGCTGAATRTGAGTATCAAAAGTACAACGATAAACTTTAAAAAACTTGTTTCGATTGAAAATACACAGGTCGAATCGACGTCCAGTTTGAAAATATGAACTTTTGTCTGGCCTAAAAGTTATCCAGGCCGCAATTACTAACAATACGTTTTAGGCACCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36738</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>416790</contig_pos>
        <strand>+</strand>
        <context>TTTCGTTCTC[A/C]TCACCCAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACGTGTCTCTCCCCTCATTTTTGTGTAAATTCGGTATTCATTTCGTTCTC</left_flank>
        <right_flank>TCACCCAAATATGAATGAAATACATTTGGTCATTTTTTGAAGTTTTATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAACTGTCAAGTTTTGTCTCGAATTTTGTGAATTTTCTGTCTTTTCCCCCTCCCTCCCATCTGCAATTCTTACGTGTTCAACTATCCCACCAGAAGAAAAAATTTCTAGCCTCCTAATCCCTTGGTAATTGGTCCACACCTCAGACCCCCCCCCCCCCCCGTTCCTTCTTCTTAACCACCCTAAAAGTTGTGATTCCCGTTTATGAAATCTCCCTGATTTCTAACTTTAGACATCCTGGGTCAAATGTGTTTTCTCTTAGAATGATAGATACCAATGCATCCTTTTTCTCATCCCCGGAAAAACTATTTCATTCCTTTCCTTTTTCTGTTCCAGCCTACCCATTTTTTCTCCAACAGATTCATTTTTGATCATTCTGATTCCTATTTCTCAGAATACATACTAGTTCCTTTCATCCCAACAACTCTCCAACAACACCATTTTTCTTTTACGTGTCTCTCCCCTCATTTTTGTGTAAATTCGGTATTCATTTCGTTCTCATCACCCAAATATGAATGAAATACATTTGGTCATTTTTTGAAGTTTTATTACGTGAGACGAAGATCAGAATAAGCACGGTAGAATTACAATGTGGGCGAAAAAGGGAATTAGATCTAATGAAAAGTATACTGTGAGGGGTCGGAAAGCAGAGAGGTTCAAGATCAGAAAAAATTCTAAATCAGACATTATACATCATCAAGTTATGTCAACCTTTCAGTTATGGCATTTACAAGAAAAATGAAGGTCGTTATAAAATTATTAATTAATGCAGAGCGACGAAACAGGTACGGTCCGACCGCCGACCGGCTCCAGAACATTATTTGTTTCAATGTTTTCTAATATGTTTTTTTTCTGATAGAACACATTTTGAAATTCAAAAAATTCCAAATTTGAACTTTTTCGGATAAAAACAAGTTGTTGAATATTTCGAATTTTAGATTGTACTTTATCAAAAGAATGGAGCCTTTTTGTGAGAGCTTATTAGCATGAGGTGCATTCGA</canonical>
            <polymorphic>TCAACTGTCAAGTTTTGTCTCGAATTTTGTGAATTTTCTGTCTTTTCCCCCTCCCTCCCATCTGCAATTCTTACGTGTTCAACTATCCCACCAGAAGAAAAAATTTCTAGCCTCCTAATCCCTTGGTAATTGGTCCACACCTCAGACCCCCCCCCCCCCCCGTTCCTTCTTCTTAACCACCCTAAAAGTTGTGATTCCCGTTTATGAAATCTCCCTGATTTCTAACTTTAGACATCCTGGGTCAAATGTGTTTTCTCTTAGAATGATAGATACCAATGCATCCTTTTTCTCATCCCCGGAAAAACTATTTCATTCCTTTCCTTTTTCTGTTCCAGCCTACCCATTTTTTCTCCAACAGATTCATTTTTGATCATTCTGATTCCTATTTCTCAGAATACATACTAGTTCCTTTCATCCCAACAACTCTCCAACAACACCATTTTTCTTTTACGTGTCTCTCCCCTCATTTTTGTGTAAATTCGGTATTCATTTCGTTCTCMTCACCCAAATATGAATGAAATACATTTGGTCATTTTTTGAAGTTTTATTACGTGAGACGAAGATCAGAATAAGCACGGTAGAATTACAATGTGGGCGAAAAAGGGAATTAGATCTAATGAAAAGTATACTGTGAGGGGTCGGAAAGCAGAGAGGTTCAAGATCAGAAAAAATTCTAAATCAGACATTATACATCATCAAGTTATGTCAACCTTTCAGTTATGGCATTTACAAGAAAAATGAAGGTCGTTATAAAATTATTAATTAATGCAGAGCGACGAAACAGGTACGGTCCGACCGCCGACCGGCTCCAGAACATTATTTGTTTCAATGTTTTCTAATATGTTTTTTTTCTGATAGAACACATTTTGAAATTCAAAAAATTCCAAATTTGAACTTTTTCGGATAAAAACAAGTTGTTGAATATTTCGAATTTTAGATTGTACTTTATCAAAAGAATGGAGCCTTTTTGTGAGAGCTTATTAGCATGAGGTGCATTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTCCAACAGATTCATTT</pcr_primer_p1>
		<pcr_primer_p2>CATTGTAATTCTACCGTGCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTCCAACAGATTCATTTTTGATCATTCTGATTCCTATTTCTCAGAATACATACTAGTTCCTTTCATCCCAACAACTCTCCAACAACACCATTTTTCTTTTACGTGTCTCTCCCCTCATTTTTGTGTAAATTCGGTATTCATTTCGTTCTCATCACCCAAATATGAATGAAATACATTTGGTCATTTTTTGAAGTTTTATTACGTGAGACGAAGATCAGAATAAGCACGGTAGAATTACAATG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTCCAACAGATTCATTTTTGATCATTCTGATTCCTATTTCTCAGAATACATACTAGTTCCTTTCATCCCAACAACTCTCCAACAACACCATTTTTCTTTTACGTGTCTCTCCCCTCATTTTTGTGTAAATTCGGTATTCATTTCGTTCTCMTCACCCAAATATGAATGAAATACATTTGGTCATTTTTTGAAGTTTTATTACGTGAGACGAAGATCAGAATAAGCACGGTAGAATTACAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36739</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>416986</contig_pos>
        <strand>+</strand>
        <context>TTATACATCA[A/T]CAAGTTATGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCAGAGAGGTTCAAGATCAGAAAAAATTCTAAATCAGACATTATACATCA</left_flank>
        <right_flank>CAAGTTATGTCAACCTTTCAGTTATGGCATTTACAAGAAAAATGAAGGTC</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCGTTTATGAAATCTCCCTGATTTCTAACTTTAGACATCCTGGGTCAAATGTGTTTTCTCTTAGAATGATAGATACCAATGCATCCTTTTTCTCATCCCCGGAAAAACTATTTCATTCCTTTCCTTTTTCTGTTCCAGCCTACCCATTTTTTCTCCAACAGATTCATTTTTGATCATTCTGATTCCTATTTCTCAGAATACATACTAGTTCCTTTCATCCCAACAACTCTCCAACAACACCATTTTTCTTTTACGTGTCTCTCCCCTCATTTTTGTGTAAATTCGGTATTCATTTCGTTCTCATCACCCAAATATGAATGAAATACATTTGGTCATTTTTTGAAGTTTTATTACGTGAGACGAAGATCAGAATAAGCACGGTAGAATTACAATGTGGGCGAAAAAGGGAATTAGATCTAATGAAAAGTATACTGTGAGGGGTCGGAAAGCAGAGAGGTTCAAGATCAGAAAAAATTCTAAATCAGACATTATACATCATCAAGTTATGTCAACCTTTCAGTTATGGCATTTACAAGAAAAATGAAGGTCGTTATAAAATTATTAATTAATGCAGAGCGACGAAACAGGTACGGTCCGACCGCCGACCGGCTCCAGAACATTATTTGTTTCAATGTTTTCTAATATGTTTTTTTTCTGATAGAACACATTTTGAAATTCAAAAAATTCCAAATTTGAACTTTTTCGGATAAAAACAAGTTGTTGAATATTTCGAATTTTAGATTGTACTTTATCAAAAGAATGGAGCCTTTTTGTGAGAGCTTATTAGCATGAGGTGCATTCGAATCAATCTTTGGTAAATTATGAAACTGAAAATCTTAAGATTGGGAAATTACGCTCAGTCAAAAAGCAGATAACTAGTAAAAGAAAATTTGCTAAAAATGAATTTATGAAGCAAGAGAGCAGATTTTTTTTCTAGTGGCGGAATTTGGATTTTTTGGGCTGTTAATCTATCTCGACAGAATTATTTAGACCTTGATG</canonical>
            <polymorphic>CCCGTTTATGAAATCTCCCTGATTTCTAACTTTAGACATCCTGGGTCAAATGTGTTTTCTCTTAGAATGATAGATACCAATGCATCCTTTTTCTCATCCCCGGAAAAACTATTTCATTCCTTTCCTTTTTCTGTTCCAGCCTACCCATTTTTTCTCCAACAGATTCATTTTTGATCATTCTGATTCCTATTTCTCAGAATACATACTAGTTCCTTTCATCCCAACAACTCTCCAACAACACCATTTTTCTTTTACGTGTCTCTCCCCTCATTTTTGTGTAAATTCGGTATTCATTTCGTTCTCATCACCCAAATATGAATGAAATACATTTGGTCATTTTTTGAAGTTTTATTACGTGAGACGAAGATCAGAATAAGCACGGTAGAATTACAATGTGGGCGAAAAAGGGAATTAGATCTAATGAAAAGTATACTGTGAGGGGTCGGAAAGCAGAGAGGTTCAAGATCAGAAAAAATTCTAAATCAGACATTATACATCAWCAAGTTATGTCAACCTTTCAGTTATGGCATTTACAAGAAAAATGAAGGTCGTTATAAAATTATTAATTAATGCAGAGCGACGAAACAGGTACGGTCCGACCGCCGACCGGCTCCAGAACATTATTTGTTTCAATGTTTTCTAATATGTTTTTTTTCTGATAGAACACATTTTGAAATTCAAAAAATTCCAAATTTGAACTTTTTCGGATAAAAACAAGTTGTTGAATATTTCGAATTTTAGATTGTACTTTATCAAAAGAATGGAGCCTTTTTGTGAGAGCTTATTAGCATGAGGTGCATTCGAATCAATCTTTGGTAAATTATGAAACTGAAAATCTTAAGATTGGGAAATTACGCTCAGTCAAAAAGCAGATAACTAGTAAAAGAAAATTTGCTAAAAATGAATTTATGAAGCAAGAGAGCAGATTTTTTTTCTAGTGGCGGAATTTGGATTTTTTGGGCTGTTAATCTATCTCGACAGAATTATTTAGACCTTGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCAGAGAGGTTCAAGATCAG</pcr_primer_p1>
		<pcr_primer_p2>GAATTTCAAAATGTGTTCTATCAG</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>AGCAGAGAGGTTCAAGATCAGAAAAAATTCTAAATCAGACATTATACATCATCAAGTTATGTCAACCTTTCAGTTATGGCATTTACAAGAAAAATGAAGGTCGTTATAAAATTATTAATTAATGCAGAGCGACGAAACAGGTACGGTCCGACCGCCGACCGGCTCCAGAACATTATTTGTTTCAATGTTTTCTAATATGTTTTTTTTCTGATAGAACACATTTTGAAATTC</canonical_amplicon>
		<polymorphic_amplicon>AGCAGAGAGGTTCAAGATCAGAAAAAATTCTAAATCAGACATTATACATCAWCAAGTTATGTCAACCTTTCAGTTATGGCATTTACAAGAAAAATGAAGGTCGTTATAAAATTATTAATTAATGCAGAGCGACGAAACAGGTACGGTCCGACCGCCGACCGGCTCCAGAACATTATTTGTTTCAATGTTTTCTAATATGTTTTTTTTCTGATAGAACACATTTTGAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36740</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>417035</contig_pos>
        <strand>+</strand>
        <context>AAAATGAAGG[C/T]CGTTATAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCAAGTTATGTCAACCTTTCAGTTATGGCATTTACAAGAAAAATGAAGG</left_flank>
        <right_flank>CGTTATAAAATTATTAATTAATGCAGAGCGACGAAACAGGTACGGTCCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTGTTTTCTCTTAGAATGATAGATACCAATGCATCCTTTTTCTCATCCCCGGAAAAACTATTTCATTCCTTTCCTTTTTCTGTTCCAGCCTACCCATTTTTTCTCCAACAGATTCATTTTTGATCATTCTGATTCCTATTTCTCAGAATACATACTAGTTCCTTTCATCCCAACAACTCTCCAACAACACCATTTTTCTTTTACGTGTCTCTCCCCTCATTTTTGTGTAAATTCGGTATTCATTTCGTTCTCATCACCCAAATATGAATGAAATACATTTGGTCATTTTTTGAAGTTTTATTACGTGAGACGAAGATCAGAATAAGCACGGTAGAATTACAATGTGGGCGAAAAAGGGAATTAGATCTAATGAAAAGTATACTGTGAGGGGTCGGAAAGCAGAGAGGTTCAAGATCAGAAAAAATTCTAAATCAGACATTATACATCATCAAGTTATGTCAACCTTTCAGTTATGGCATTTACAAGAAAAATGAAGGTCGTTATAAAATTATTAATTAATGCAGAGCGACGAAACAGGTACGGTCCGACCGCCGACCGGCTCCAGAACATTATTTGTTTCAATGTTTTCTAATATGTTTTTTTTCTGATAGAACACATTTTGAAATTCAAAAAATTCCAAATTTGAACTTTTTCGGATAAAAACAAGTTGTTGAATATTTCGAATTTTAGATTGTACTTTATCAAAAGAATGGAGCCTTTTTGTGAGAGCTTATTAGCATGAGGTGCATTCGAATCAATCTTTGGTAAATTATGAAACTGAAAATCTTAAGATTGGGAAATTACGCTCAGTCAAAAAGCAGATAACTAGTAAAAGAAAATTTGCTAAAAATGAATTTATGAAGCAAGAGAGCAGATTTTTTTTCTAGTGGCGGAATTTGGATTTTTTGGGCTGTTAATCTATCTCGACAGAATTATTTAGACCTTGATGAACAAGTTTTCAAAGTTGCGTGGGTGGAATGGATCTGGAATCACGGAGA</canonical>
            <polymorphic>ATGTGTTTTCTCTTAGAATGATAGATACCAATGCATCCTTTTTCTCATCCCCGGAAAAACTATTTCATTCCTTTCCTTTTTCTGTTCCAGCCTACCCATTTTTTCTCCAACAGATTCATTTTTGATCATTCTGATTCCTATTTCTCAGAATACATACTAGTTCCTTTCATCCCAACAACTCTCCAACAACACCATTTTTCTTTTACGTGTCTCTCCCCTCATTTTTGTGTAAATTCGGTATTCATTTCGTTCTCATCACCCAAATATGAATGAAATACATTTGGTCATTTTTTGAAGTTTTATTACGTGAGACGAAGATCAGAATAAGCACGGTAGAATTACAATGTGGGCGAAAAAGGGAATTAGATCTAATGAAAAGTATACTGTGAGGGGTCGGAAAGCAGAGAGGTTCAAGATCAGAAAAAATTCTAAATCAGACATTATACATCATCAAGTTATGTCAACCTTTCAGTTATGGCATTTACAAGAAAAATGAAGGYCGTTATAAAATTATTAATTAATGCAGAGCGACGAAACAGGTACGGTCCGACCGCCGACCGGCTCCAGAACATTATTTGTTTCAATGTTTTCTAATATGTTTTTTTTCTGATAGAACACATTTTGAAATTCAAAAAATTCCAAATTTGAACTTTTTCGGATAAAAACAAGTTGTTGAATATTTCGAATTTTAGATTGTACTTTATCAAAAGAATGGAGCCTTTTTGTGAGAGCTTATTAGCATGAGGTGCATTCGAATCAATCTTTGGTAAATTATGAAACTGAAAATCTTAAGATTGGGAAATTACGCTCAGTCAAAAAGCAGATAACTAGTAAAAGAAAATTTGCTAAAAATGAATTTATGAAGCAAGAGAGCAGATTTTTTTTCTAGTGGCGGAATTTGGATTTTTTGGGCTGTTAATCTATCTCGACAGAATTATTTAGACCTTGATGAACAAGTTTTCAAAGTTGCGTGGGTGGAATGGATCTGGAATCACGGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAGGTTCAAGATCAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAATTTCAAAATGTGTTCTATCAG</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>GAGAGGTTCAAGATCAGAAAAAATTCTAAATCAGACATTATACATCATCAAGTTATGTCAACCTTTCAGTTATGGCATTTACAAGAAAAATGAAGGTCGTTATAAAATTATTAATTAATGCAGAGCGACGAAACAGGTACGGTCCGACCGCCGACCGGCTCCAGAACATTATTTGTTTCAATGTTTTCTAATATGTTTTTTTTCTGATAGAACACATTTTGAAATTC</canonical_amplicon>
		<polymorphic_amplicon>GAGAGGTTCAAGATCAGAAAAAATTCTAAATCAGACATTATACATCATCAAGTTATGTCAACCTTTCAGTTATGGCATTTACAAGAAAAATGAAGGYCGTTATAAAATTATTAATTAATGCAGAGCGACGAAACAGGTACGGTCCGACCGCCGACCGGCTCCAGAACATTATTTGTTTCAATGTTTTCTAATATGTTTTTTTTCTGATAGAACACATTTTGAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36741</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>444836</contig_pos>
        <strand>+</strand>
        <context>GCACGTATTA[A/G]AAGTTGAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTATCGAACCGATCGGGTCAAAATCAATTTTTTCAAATAGCACGTATTA</left_flank>
        <right_flank>AAGTTGAAAATTCTTTCAGATGGGCAGTTTCCAGATTTTTGGCTTTTGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAGAGAAGAAGCGATCATAAAAAAATGGGGAAGCAGGGGGAAAATAAAAAAATAATGTCTAGATAAAGTGGGGGAGAAGTCTTCGGTCGTTGTTTGGAGTCTACAATCATCAAAGATAGATAAATTCAAAGAAGACAAAGGTCACGAAGGTGAACTGAAAGAGATATAAGGAATTTGGAGATCAGAAACCGCAGTTCTGATTTTTCAGGTCCCTTTGGAAAAACCCTGTATTCATTTTTATTATCCATCATGGTTCTGCTACCCGAATAACCAATTTTTGATTACAGAACTTTTTTTCAAAATCTACAAATTTACCAGACTACCAATTTGGTTACAATGTCTCTCATTTTCAACACTGTAAAAGTTTAATGTATTTTTGTTTTATTTCATAACGACAGGTGTCAGAAAATTTGCTGATCTATCTACCGAAAACTGTGTTCTAAACAAGTATCGAACCGATCGGGTCAAAATCAATTTTTTCAAATAGCACGTATTAGAAGTTGAAAATTCTTTCAGATGGGCAGTTTCCAGATTTTTGGCTTTTGAGAAATAAAAAGAGAAGATGAAAGAAAAGATTGGAAAAATAGGAAAAAATATTATAACATTTTGGTAATATTTGTGGCTGATTGAATGTTTCAGGAGAGAACCGTTGATTCTGACTATTCAGTTGATTCTGACTATTTTCCGGAACCTGGAGCTTAGCTGTCAAGTGTCCGATCACTTTGAAAATTTCGGAGAGTGTAAAACAGACATATAGTGAAAATTTTGCATTCACACAACTTTTTGAAAATTCCGACTTATCCAGTTATTTGTCGAGTTCTGAAAGATAACTGTTTTTTTACGTTATCCGTACTAACAATTGGCCAAAGGGCGTATTTCAGAACTAGGAAAATAGCTGAATAACTAGAAATTTTCATGAAAAGATTGGGAATGTAAATTTTTCAATCTATCTCGAAAGATTGCCATTTTCTACCTGCGCTCACGAATTTTTTTTAAC</canonical>
            <polymorphic>AAAAAGAGAAGAAGCGATCATAAAAAAATGGGGAAGCAGGGGGAAAATAAAAAAATAATGTCTAGATAAAGTGGGGGAGAAGTCTTCGGTCGTTGTTTGGAGTCTACAATCATCAAAGATAGATAAATTCAAAGAAGACAAAGGTCACGAAGGTGAACTGAAAGAGATATAAGGAATTTGGAGATCAGAAACCGCAGTTCTGATTTTTCAGGTCCCTTTGGAAAAACCCTGTATTCATTTTTATTATCCATCATGGTTCTGCTACCCGAATAACCAATTTTTGATTACAGAACTTTTTTTCAAAATCTACAAATTTACCAGACTACCAATTTGGTTACAATGTCTCTCATTTTCAACACTGTAAAAGTTTAATGTATTTTTGTTTTATTTCATAACGACAGGTGTCAGAAAATTTGCTGATCTATCTACCGAAAACTGTGTTCTAAACAAGTATCGAACCGATCGGGTCAAAATCAATTTTTTCAAATAGCACGTATTARAAGTTGAAAATTCTTTCAGATGGGCAGTTTCCAGATTTTTGGCTTTTGAGAAATAAAAAGAGAAGATGAAAGAAAAGATTGGAAAAATAGGAAAAAATATTATAACATTTTGGTAATATTTGTGGCTGATTGAATGTTTCAGGAGAGAACCGTTGATTCTGACTATTCAGTTGATTCTGACTATTTTCCGGAACCTGGAGCTTAGCTGTCAAGTGTCCGATCACTTTGAAAATTTCGGAGAGTGTAAAACAGACATATAGTGAAAATTTTGCATTCACACAACTTTTTGAAAATTCCGACTTATCCAGTTATTTGTCGAGTTCTGAAAGATAACTGTTTTTTTACGTTATCCGTACTAACAATTGGCCAAAGGGCGTATTTCAGAACTAGGAAAATAGCTGAATAACTAGAAATTTTCATGAAAAGATTGGGAATGTAAATTTTTCAATCTATCTCGAAAGATTGCCATTTTCTACCTGCGCTCACGAATTTTTTTTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCTCTCATTTTCAACACTGTA</pcr_primer_p1>
		<pcr_primer_p2>TATTTTTCCAATCTTTTCTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTCTCTCATTTTCAACACTGTAAAAGTTTAATGTATTTTTGTTTTATTTCATAACGACAGGTGTCAGAAAATTTGCTGATCTATCTACCGAAAACTGTGTTCTAAACAAGTATCGAACCGATCGGGTCAAAATCAATTTTTTCAAATAGCACGTATTAGAAGTTGAAAATTCTTTCAGATGGGCAGTTTCCAGATTTTTGGCTTTTGAGAAATAAAAAGAGAAGATGAAAGAAAAGATTGGAAAAATA</canonical_amplicon>
		<polymorphic_amplicon>TGTCTCTCATTTTCAACACTGTAAAAGTTTAATGTATTTTTGTTTTATTTCATAACGACAGGTGTCAGAAAATTTGCTGATCTATCTACCGAAAACTGTGTTCTAAACAAGTATCGAACCGATCGGGTCAAAATCAATTTTTTCAAATAGCACGTATTARAAGTTGAAAATTCTTTCAGATGGGCAGTTTCCAGATTTTTGGCTTTTGAGAAATAAAAAGAGAAGATGAAAGAAAAGATTGGAAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36742</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>449261</contig_pos>
        <strand></strand>
        <context>tgactttcta[C/T]cattttgaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGATGTTCTGAAATTTCGAATTTTTGAAATCGGAATATTTTGACTTTCTA</left_flank>
        <right_flank>CATTTTGAAATCAGTGTGATTGGAATACTCCAAAATTTCGGAATTCCAAA</right_flank>
        <qual_score>35</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAATTCTGAATTTTCAAGATTGTATTCTTATTGTAAGAAAAAGAAGCTAGAAAAATAAAACAAGAGACGCTAATTCGATTATTGAACAATAGGACATTTGATCATTTCTGTTAATTGCTTTTATCATTTTTTGAAAGGAATTTGAGAGTAATTTCAGGTTTGTAGCTTTTTCTCGAGTTCGTTCAAAAGCCTGTTCTAATTTTCAACAGCTGAAATATAATTTTGAAAAAAACACAATAATTTTTTCGCAATTTTTAATTGAAAGGGGAAAATTAAAAAATGTGACGTATTTCAAATTTGATAAACCTTCAAAATACCAGATTCCGTTAACTTTTCAAAATTTCAACTCACTATTTTAAATTATAAAAACTCAAGATTATTTTTCGCTTGAGAGCCCTCAAAATATGAAAATCGGAATATTCCAAAATTCCGAAATTTTGAATATTCGATGTTCTGAAATTTCGAATTTTTGAAATCGGAATATTTTGACTTTCTACCATTTTGAAATCAGTGTGATTGGAATACTCCAAAATTTCGGAATTCCAAAAACTTGAAAATCGGAATATACCAAACTTTGCAAATTCCAAAATTTTCAAAATATAATTATTCCGATAATCTGAAATAACGAAATCATTGAAATCGGATGGTTTTGATAATCCGAACTTTTCCAAATCGGAAGATACAATATTCCAAAATTCCGTAACTTTAAAAAAGGAAATATTAAAAAATTCCGCAATTCAACCGATTTTGAAATCGGAGTTCGGAATTTTTGAAACTCGGAAAATTCGACATTTTGAAAAATTCCAAAAAGGCCATTCCAAAAATAGTTCTCAGCTTTCGTTAATTTTCCAATTTTTAAACTCACTATTTTTTCTTTTTCTCTCGAGACCCAAACAGCTAATATAAATTTTCTTAGTGAGATTTTTCTCCGAATTATCAGAAAGATTTTATTTTTCATTTCACTAAATGTAAACTACCCCAACGTGTATAAAATGAA</canonical>
            <polymorphic>TGAAAATTCTGAATTTTCAAGATTGTATTCTTATTGTAAGAAAAAGAAGCTAGAAAAATAAAACAAGAGACGCTAATTCGATTATTGAACAATAGGACATTTGATCATTTCTGTTAATTGCTTTTATCATTTTTTGAAAGGAATTTGAGAGTAATTTCAGGTTTGTAGCTTTTTCTCGAGTTCGTTCAAAAGCCTGTTCTAATTTTCAACAGCTGAAATATAATTTTGAAAAAAACACAATAATTTTTTCGCAATTTTTAATTGAAAGGGGAAAATTAAAAAATGTGACGTATTTCAAATTTGATAAACCTTCAAAATACCAGATTCCGTTAACTTTTCAAAATTTCAACTCACTATTTTAAATTATAAAAACTCAAGATTATTTTTCGCTTGAGAGCCCTCAAAATATGAAAATCGGAATATTCCAAAATTCCGAAATTTTGAATATTCGATGTTCTGAAATTTCGAATTTTTGAAATCGGAATATTTTGACTTTCTAYCATTTTGAAATCAGTGTGATTGGAATACTCCAAAATTTCGGAATTCCAAAAACTTGAAAATCGGAATATACCAAACTTTGCAAATTCCAAAATTTTCAAAATATAATTATTCCGATAATCTGAAATAACGAAATCATTGAAATCGGATGGTTTTGATAATCCGAACTTTTCCAAATCGGAAGATACAATATTCCAAAATTCCGTAACTTTAAAAAAGGAAATATTAAAAAATTCCGCAATTCAACCGATTTTGAAATCGGAGTTCGGAATTTTTGAAACTCGGAAAATTCGACATTTTGAAAAATTCCAAAAAGGCCATTCCAAAAATAGTTCTCAGCTTTCGTTAATTTTCCAATTTTTAAACTCACTATTTTTTCTTTTTCTCTCGAGACCCAAACAGCTAATATAAATTTTCTTAGTGAGATTTTTCTCCGAATTATCAGAAAGATTTTATTTTTCATTTCACTAAATGTAAACTACCCCAACGTGTATAAAATGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGATTATTTTTCGCTTGAGAG</pcr_primer_p1>
		<pcr_primer_p2>AAAATTAACGAAAGCTGAGAACT</pcr_primer_p2>
		<pcr_amplicon_size>476</pcr_amplicon_size>
		<canonical_amplicon>AAGATTATTTTTCGCTTGAGAGCCCTCAAAATATGAAAATCGGAATATTCCAAAATTCCGAAATTTTGAATATTCGATGTTCTGAAATTTCGAATTTTTGAAATCGGAATATTTTGACTTTCTACCATTTTGAAATCAGTGTGATTGGAATACTCCAAAATTTCGGAATTCCAAAAACTTGAAAATCGGAATATACCAAACTTTGCAAATTCCAAAATTTTCAAAATATAATTATTCCGATAATCTGAAATAACGAAATCATTGAAATCGGATGGTTTTGATAATCCGAACTTTTCCAAATCGGAAGATACAATATTCCAAAATTCCGTAACTTTAAAAAAGGAAATATTAAAAAATTCCGCAATTCAACCGATTTTGAAATCGGAGTTCGGAATTTTTGAAACTCGGAAAATTCGACATTTTGAAAAATTCCAAAAAGGCCATTCCAAAAATAGTTCTCAGCTTTCGTTAATTTT</canonical_amplicon>
		<polymorphic_amplicon>AAGATTATTTTTCGCTTGAGAGCCCTCAAAATATGAAAATCGGAATATTCCAAAATTCCGAAATTTTGAATATTCGATGTTCTGAAATTTCGAATTTTTGAAATCGGAATATTTTGACTTTCTAYCATTTTGAAATCAGTGTGATTGGAATACTCCAAAATTTCGGAATTCCAAAAACTTGAAAATCGGAATATACCAAACTTTGCAAATTCCAAAATTTTCAAAATATAATTATTCCGATAATCTGAAATAACGAAATCATTGAAATCGGATGGTTTTGATAATCCGAACTTTTCCAAATCGGAAGATACAATATTCCAAAATTCCGTAACTTTAAAAAAGGAAATATTAAAAAATTCCGCAATTCAACCGATTTTGAAATCGGAGTTCGGAATTTTTGAAACTCGGAAAATTCGACATTTTGAAAAATTCCAAAAAGGCCATTCCAAAAATAGTTCTCAGCTTTCGTTAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36743</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>449379</contig_pos>
        <strand></strand>
        <context>tattccgata[A/G]tctgaaataa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATACCAAACTTTGCAAATTCCAAAATTTTCAAAATATAATTATTCCGATA</left_flank>
        <right_flank>TCTGAAATAACGAAATCATTGAAATCGGATGGTTTTGATAATCCGAACTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTTTTATCATTTTTTGAAAGGAATTTGAGAGTAATTTCAGGTTTGTAGCTTTTTCTCGAGTTCGTTCAAAAGCCTGTTCTAATTTTCAACAGCTGAAATATAATTTTGAAAAAAACACAATAATTTTTTCGCAATTTTTAATTGAAAGGGGAAAATTAAAAAATGTGACGTATTTCAAATTTGATAAACCTTCAAAATACCAGATTCCGTTAACTTTTCAAAATTTCAACTCACTATTTTAAATTATAAAAACTCAAGATTATTTTTCGCTTGAGAGCCCTCAAAATATGAAAATCGGAATATTCCAAAATTCCGAAATTTTGAATATTCGATGTTCTGAAATTTCGAATTTTTGAAATCGGAATATTTTGACTTTCTACCATTTTGAAATCAGTGTGATTGGAATACTCCAAAATTTCGGAATTCCAAAAACTTGAAAATCGGAATATACCAAACTTTGCAAATTCCAAAATTTTCAAAATATAATTATTCCGATAATCTGAAATAACGAAATCATTGAAATCGGATGGTTTTGATAATCCGAACTTTTCCAAATCGGAAGATACAATATTCCAAAATTCCGTAACTTTAAAAAAGGAAATATTAAAAAATTCCGCAATTCAACCGATTTTGAAATCGGAGTTCGGAATTTTTGAAACTCGGAAAATTCGACATTTTGAAAAATTCCAAAAAGGCCATTCCAAAAATAGTTCTCAGCTTTCGTTAATTTTCCAATTTTTAAACTCACTATTTTTTCTTTTTCTCTCGAGACCCAAACAGCTAATATAAATTTTCTTAGTGAGATTTTTCTCCGAATTATCAGAAAGATTTTATTTTTCATTTCACTAAATGTAAACTACCCCAACGTGTATAAAATGAAAGTGTAAATGAAAATCTTTAGCAGCTTTCAATCTCTCAAAATTAAATTTCCTTCCTTTTCCATTACACCCACTCATCGTCCTGAAAATACTGGGAAGTGATGGAAAAGTAAAATTGGA</canonical>
            <polymorphic>TGCTTTTATCATTTTTTGAAAGGAATTTGAGAGTAATTTCAGGTTTGTAGCTTTTTCTCGAGTTCGTTCAAAAGCCTGTTCTAATTTTCAACAGCTGAAATATAATTTTGAAAAAAACACAATAATTTTTTCGCAATTTTTAATTGAAAGGGGAAAATTAAAAAATGTGACGTATTTCAAATTTGATAAACCTTCAAAATACCAGATTCCGTTAACTTTTCAAAATTTCAACTCACTATTTTAAATTATAAAAACTCAAGATTATTTTTCGCTTGAGAGCCCTCAAAATATGAAAATCGGAATATTCCAAAATTCCGAAATTTTGAATATTCGATGTTCTGAAATTTCGAATTTTTGAAATCGGAATATTTTGACTTTCTACCATTTTGAAATCAGTGTGATTGGAATACTCCAAAATTTCGGAATTCCAAAAACTTGAAAATCGGAATATACCAAACTTTGCAAATTCCAAAATTTTCAAAATATAATTATTCCGATARTCTGAAATAACGAAATCATTGAAATCGGATGGTTTTGATAATCCGAACTTTTCCAAATCGGAAGATACAATATTCCAAAATTCCGTAACTTTAAAAAAGGAAATATTAAAAAATTCCGCAATTCAACCGATTTTGAAATCGGAGTTCGGAATTTTTGAAACTCGGAAAATTCGACATTTTGAAAAATTCCAAAAAGGCCATTCCAAAAATAGTTCTCAGCTTTCGTTAATTTTCCAATTTTTAAACTCACTATTTTTTCTTTTTCTCTCGAGACCCAAACAGCTAATATAAATTTTCTTAGTGAGATTTTTCTCCGAATTATCAGAAAGATTTTATTTTTCATTTCACTAAATGTAAACTACCCCAACGTGTATAAAATGAAAGTGTAAATGAAAATCTTTAGCAGCTTTCAATCTCTCAAAATTAAATTTCCTTCCTTTTCCATTACACCCACTCATCGTCCTGAAAATACTGGGAAGTGATGGAAAAGTAAAATTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGATTATTTTTCGCTTGAGAG</pcr_primer_p1>
		<pcr_primer_p2>AAAATTAACGAAAGCTGAGAACT</pcr_primer_p2>
		<pcr_amplicon_size>476</pcr_amplicon_size>
		<canonical_amplicon>AAGATTATTTTTCGCTTGAGAGCCCTCAAAATATGAAAATCGGAATATTCCAAAATTCCGAAATTTTGAATATTCGATGTTCTGAAATTTCGAATTTTTGAAATCGGAATATTTTGACTTTCTACCATTTTGAAATCAGTGTGATTGGAATACTCCAAAATTTCGGAATTCCAAAAACTTGAAAATCGGAATATACCAAACTTTGCAAATTCCAAAATTTTCAAAATATAATTATTCCGATAATCTGAAATAACGAAATCATTGAAATCGGATGGTTTTGATAATCCGAACTTTTCCAAATCGGAAGATACAATATTCCAAAATTCCGTAACTTTAAAAAAGGAAATATTAAAAAATTCCGCAATTCAACCGATTTTGAAATCGGAGTTCGGAATTTTTGAAACTCGGAAAATTCGACATTTTGAAAAATTCCAAAAAGGCCATTCCAAAAATAGTTCTCAGCTTTCGTTAATTTT</canonical_amplicon>
		<polymorphic_amplicon>AAGATTATTTTTCGCTTGAGAGCCCTCAAAATATGAAAATCGGAATATTCCAAAATTCCGAAATTTTGAATATTCGATGTTCTGAAATTTCGAATTTTTGAAATCGGAATATTTTGACTTTCTACCATTTTGAAATCAGTGTGATTGGAATACTCCAAAATTTCGGAATTCCAAAAACTTGAAAATCGGAATATACCAAACTTTGCAAATTCCAAAATTTTCAAAATATAATTATTCCGATARTCTGAAATAACGAAATCATTGAAATCGGATGGTTTTGATAATCCGAACTTTTCCAAATCGGAAGATACAATATTCCAAAATTCCGTAACTTTAAAAAAGGAAATATTAAAAAATTCCGCAATTCAACCGATTTTGAAATCGGAGTTCGGAATTTTTGAAACTCGGAAAATTCGACATTTTGAAAAATTCCAAAAAGGCCATTCCAAAAATAGTTCTCAGCTTTCGTTAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36744</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>449411</contig_pos>
        <strand></strand>
        <context>aaatcggatg[G/A]ttttgataat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATATAATTATTCCGATAATCTGAAATAACGAAATCATTGAAATCGGATG</left_flank>
        <right_flank>TTTTGATAATCCGAACTTTTCCAAATCGGAAGATACAATATTCCAAAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAATTTCAGGTTTGTAGCTTTTTCTCGAGTTCGTTCAAAAGCCTGTTCTAATTTTCAACAGCTGAAATATAATTTTGAAAAAAACACAATAATTTTTTCGCAATTTTTAATTGAAAGGGGAAAATTAAAAAATGTGACGTATTTCAAATTTGATAAACCTTCAAAATACCAGATTCCGTTAACTTTTCAAAATTTCAACTCACTATTTTAAATTATAAAAACTCAAGATTATTTTTCGCTTGAGAGCCCTCAAAATATGAAAATCGGAATATTCCAAAATTCCGAAATTTTGAATATTCGATGTTCTGAAATTTCGAATTTTTGAAATCGGAATATTTTGACTTTCTACCATTTTGAAATCAGTGTGATTGGAATACTCCAAAATTTCGGAATTCCAAAAACTTGAAAATCGGAATATACCAAACTTTGCAAATTCCAAAATTTTCAAAATATAATTATTCCGATAATCTGAAATAACGAAATCATTGAAATCGGATGGTTTTGATAATCCGAACTTTTCCAAATCGGAAGATACAATATTCCAAAATTCCGTAACTTTAAAAAAGGAAATATTAAAAAATTCCGCAATTCAACCGATTTTGAAATCGGAGTTCGGAATTTTTGAAACTCGGAAAATTCGACATTTTGAAAAATTCCAAAAAGGCCATTCCAAAAATAGTTCTCAGCTTTCGTTAATTTTCCAATTTTTAAACTCACTATTTTTTCTTTTTCTCTCGAGACCCAAACAGCTAATATAAATTTTCTTAGTGAGATTTTTCTCCGAATTATCAGAAAGATTTTATTTTTCATTTCACTAAATGTAAACTACCCCAACGTGTATAAAATGAAAGTGTAAATGAAAATCTTTAGCAGCTTTCAATCTCTCAAAATTAAATTTCCTTCCTTTTCCATTACACCCACTCATCGTCCTGAAAATACTGGGAAGTGATGGAAAAGTAAAATTGGATTCTCATGAACGTATCAAAGTCTTTCCTTCTC</canonical>
            <polymorphic>GTAATTTCAGGTTTGTAGCTTTTTCTCGAGTTCGTTCAAAAGCCTGTTCTAATTTTCAACAGCTGAAATATAATTTTGAAAAAAACACAATAATTTTTTCGCAATTTTTAATTGAAAGGGGAAAATTAAAAAATGTGACGTATTTCAAATTTGATAAACCTTCAAAATACCAGATTCCGTTAACTTTTCAAAATTTCAACTCACTATTTTAAATTATAAAAACTCAAGATTATTTTTCGCTTGAGAGCCCTCAAAATATGAAAATCGGAATATTCCAAAATTCCGAAATTTTGAATATTCGATGTTCTGAAATTTCGAATTTTTGAAATCGGAATATTTTGACTTTCTACCATTTTGAAATCAGTGTGATTGGAATACTCCAAAATTTCGGAATTCCAAAAACTTGAAAATCGGAATATACCAAACTTTGCAAATTCCAAAATTTTCAAAATATAATTATTCCGATAATCTGAAATAACGAAATCATTGAAATCGGATGRTTTTGATAATCCGAACTTTTCCAAATCGGAAGATACAATATTCCAAAATTCCGTAACTTTAAAAAAGGAAATATTAAAAAATTCCGCAATTCAACCGATTTTGAAATCGGAGTTCGGAATTTTTGAAACTCGGAAAATTCGACATTTTGAAAAATTCCAAAAAGGCCATTCCAAAAATAGTTCTCAGCTTTCGTTAATTTTCCAATTTTTAAACTCACTATTTTTTCTTTTTCTCTCGAGACCCAAACAGCTAATATAAATTTTCTTAGTGAGATTTTTCTCCGAATTATCAGAAAGATTTTATTTTTCATTTCACTAAATGTAAACTACCCCAACGTGTATAAAATGAAAGTGTAAATGAAAATCTTTAGCAGCTTTCAATCTCTCAAAATTAAATTTCCTTCCTTTTCCATTACACCCACTCATCGTCCTGAAAATACTGGGAAGTGATGGAAAAGTAAAATTGGATTCTCATGAACGTATCAAAGTCTTTCCTTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGATTATTTTTCGCTTGAGAG</pcr_primer_p1>
		<pcr_primer_p2>AAAATTAACGAAAGCTGAGAACT</pcr_primer_p2>
		<pcr_amplicon_size>476</pcr_amplicon_size>
		<canonical_amplicon>AAGATTATTTTTCGCTTGAGAGCCCTCAAAATATGAAAATCGGAATATTCCAAAATTCCGAAATTTTGAATATTCGATGTTCTGAAATTTCGAATTTTTGAAATCGGAATATTTTGACTTTCTACCATTTTGAAATCAGTGTGATTGGAATACTCCAAAATTTCGGAATTCCAAAAACTTGAAAATCGGAATATACCAAACTTTGCAAATTCCAAAATTTTCAAAATATAATTATTCCGATAATCTGAAATAACGAAATCATTGAAATCGGATGGTTTTGATAATCCGAACTTTTCCAAATCGGAAGATACAATATTCCAAAATTCCGTAACTTTAAAAAAGGAAATATTAAAAAATTCCGCAATTCAACCGATTTTGAAATCGGAGTTCGGAATTTTTGAAACTCGGAAAATTCGACATTTTGAAAAATTCCAAAAAGGCCATTCCAAAAATAGTTCTCAGCTTTCGTTAATTTT</canonical_amplicon>
		<polymorphic_amplicon>AAGATTATTTTTCGCTTGAGAGCCCTCAAAATATGAAAATCGGAATATTCCAAAATTCCGAAATTTTGAATATTCGATGTTCTGAAATTTCGAATTTTTGAAATCGGAATATTTTGACTTTCTACCATTTTGAAATCAGTGTGATTGGAATACTCCAAAATTTCGGAATTCCAAAAACTTGAAAATCGGAATATACCAAACTTTGCAAATTCCAAAATTTTCAAAATATAATTATTCCGATAATCTGAAATAACGAAATCATTGAAATCGGATGRTTTTGATAATCCGAACTTTTCCAAATCGGAAGATACAATATTCCAAAATTCCGTAACTTTAAAAAAGGAAATATTAAAAAATTCCGCAATTCAACCGATTTTGAAATCGGAGTTCGGAATTTTTGAAACTCGGAAAATTCGACATTTTGAAAAATTCCAAAAAGGCCATTCCAAAAATAGTTCTCAGCTTTCGTTAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36745</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>464332</contig_pos>
        <strand></strand>
        <context>CCGTGTTTCT[T/A]GTACTACGCC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CCGGGTGGTGTGCGTAGTTTTCAGTGTCACCACCCTCCCCCCGTGTTTCT</left_flank>
        <right_flank>GTACTACGCCAAAAAATGTGTTTGACATTGAAAAAAGATCAAGCGCGCCG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAGATTCTCATGCTAGACAATAAAACAAAAAAAGCTGATGGTTCTTGGAACTGATACGTATAGTGAAACGTAATATTTAAATTATAATGTATAATTTTATGGAAAAAAATATATAATCGACTGATGAAAAAAAAGACACGAAAGTTTTTGAAATTAGCATATTGGTCACAAGTGGGCTGAATAAATTGAATATGACACTACAAAGACCTGAAAAAATGTCATTTCATGAATCCTAGTTTATCGAGTTGTGCTTATCGAAATATTAGCAAACTACACGTACTATTCTACTGAAAATTACAAAAACAAAAATCCCATTATATGGGAAACTAATCCGTTGGAACTAACACGAAAAACGACACAGACTGTCAAAAACATCTCCAAAAAATGTAAAGTGTATTCCCGTTGTCACCTGCACCTAGAAAAAAAAGAAGTGAAAGAAAAGCGGACCCGGGTGGTGTGCGTAGTTTTCAGTGTCACCACCCTCCCCCCGTGTTTCTTGTACTACGCCAAAAAATGTGTTTGACATTGAAAAAAGATCAAGCGCGCCGATATATCCGCATTTTCTTGCCCCTGCTTGGTGTGTAGACCCTGGGGGAGATGGAGGGGTAACATCGTATGTCTCAGTTAACAACATCTGAATTGATTATGCAAAAAAATTTGTCGGATCGAGGGGAGAGGAATAGATAAAGCAAATTCTTCAGGCAGATAATTTTTGTTTTCTTGAAATATAGAATTCCACAATGTTCAAAAAAAGAATGCATGTTTCTTTCTGTGTTAGAGAATTCTGATAAGTCAATATCTGCGCTAAAAATTATACAAAGTTCAGAGGACACTTGAAAAATTACAGCCCGCCCGGGTAAGCTCAGGGTTTTCAAATTTAAAAAAAGTTCCAAAATTTTAGAATATTGAAAATGAATATTTTTGAAGGCACTATGTTTTTTGCAAACTTTTCATCAGCCGAATTTTTTGAATTTTACTTTAAAAGAATTCATGAAAGT</canonical>
            <polymorphic>CAAAGATTCTCATGCTAGACAATAAAACAAAAAAAGCTGATGGTTCTTGGAACTGATACGTATAGTGAAACGTAATATTTAAATTATAATGTATAATTTTATGGAAAAAAATATATAATCGACTGATGAAAAAAAAGACACGAAAGTTTTTGAAATTAGCATATTGGTCACAAGTGGGCTGAATAAATTGAATATGACACTACAAAGACCTGAAAAAATGTCATTTCATGAATCCTAGTTTATCGAGTTGTGCTTATCGAAATATTAGCAAACTACACGTACTATTCTACTGAAAATTACAAAAACAAAAATCCCATTATATGGGAAACTAATCCGTTGGAACTAACACGAAAAACGACACAGACTGTCAAAAACATCTCCAAAAAATGTAAAGTGTATTCCCGTTGTCACCTGCACCTAGAAAAAAAAGAAGTGAAAGAAAAGCGGACCCGGGTGGTGTGCGTAGTTTTCAGTGTCACCACCCTCCCCCCGTGTTTCTWGTACTACGCCAAAAAATGTGTTTGACATTGAAAAAAGATCAAGCGCGCCGATATATCCGCATTTTCTTGCCCCTGCTTGGTGTGTAGACCCTGGGGGAGATGGAGGGGTAACATCGTATGTCTCAGTTAACAACATCTGAATTGATTATGCAAAAAAATTTGTCGGATCGAGGGGAGAGGAATAGATAAAGCAAATTCTTCAGGCAGATAATTTTTGTTTTCTTGAAATATAGAATTCCACAATGTTCAAAAAAAGAATGCATGTTTCTTTCTGTGTTAGAGAATTCTGATAAGTCAATATCTGCGCTAAAAATTATACAAAGTTCAGAGGACACTTGAAAAATTACAGCCCGCCCGGGTAAGCTCAGGGTTTTCAAATTTAAAAAAAGTTCCAAAATTTTAGAATATTGAAAATGAATATTTTTGAAGGCACTATGTTTTTTGCAAACTTTTCATCAGCCGAATTTTTTGAATTTTACTTTAAAAGAATTCATGAAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAGTGTATTCCCGTTGTCA</pcr_primer_p1>
		<pcr_primer_p2>TTCAGATGTTGTTAACTGAGACA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAAAGTGTATTCCCGTTGTCACCTGCACCTAGAAAAAAAAGAAGTGAAAGAAAAGCGGACCCGGGTGGTGTGCGTAGTTTTCAGTGTCACCACCCTCCCCCCGTGTTTCTTGTACTACGCCAAAAAATGTGTTTGACATTGAAAAAAGATCAAGCGCGCCGATATATCCGCATTTTCTTGCCCCTGCTTGGTGTGTAGACCCTGGGGGAGATGGAGGGGTAACATCGTATGTCTCAGTTAACAACATCTGAA</canonical_amplicon>
		<polymorphic_amplicon>TAAAGTGTATTCCCGTTGTCACCTGCACCTAGAAAAAAAAGAAGTGAAAGAAAAGCGGACCCGGGTGGTGTGCGTAGTTTTCAGTGTCACCACCCTCCCCCCGTGTTTCTWGTACTACGCCAAAAAATGTGTTTGACATTGAAAAAAGATCAAGCGCGCCGATATATCCGCATTTTCTTGCCCCTGCTTGGTGTGTAGACCCTGGGGGAGATGGAGGGGTAACATCGTATGTCTCAGTTAACAACATCTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36746</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>468178</contig_pos>
        <strand></strand>
        <context>GAAATTTTGG[G/A]AGAAACCGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATCAGCAAAATTTTTGCCTAGAACATGATACTTCTATCAGAAATTTTGG</left_flank>
        <right_flank>AGAAACCGTACAGTATGTACTCAGTGAATGGCTCGTTTGTTTTTGCTGGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCTCTTCTCTCATATTCGTCATGAGTCACAGCGACATCTTCAAAATTTAACAATCTAAATCATGATTTTCTTATTTTTCTGTATTTTTCCCCTAATTTTGTTCATTTTCATGTATAATTATTTTTTTTAATAAATAAAATTCTACATAATGCGCTGTTTCTTTATAAAAACATCAATAAACGCGAACCGAACCGGCCCCTGCTGTTAGAAGGCCGGAAGTTGGCCGGTAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAATCTGACCAAGTTCCGTCCTGAAGCCGACCAGCCTCCGGCCAGAAGTTGCCGGCGACGCCCGAGTAAATACACATTTCTGATGCACAGATTGAAAAAAACAAACATTTTTAAAAATTAGAAATTTTATGCAAGAAAATTAACCTAATGCAAGGAAACAGGGGGTTCGGTGAAGATAATCAGCAAAATTTTTGCCTAGAACATGATACTTCTATCAGAAATTTTGGGAGAAACCGTACAGTATGTACTCAGTGAATGGCTCGTTTGTTTTTGCTGGGAGGGAGAAAAGTGAGAGTTTTCACAACTACTTATTACAGGGAGGTTTTGAACAATATTTACAAGGGTGCACGACAGTGTTAGACTTTTCGCTTTTTGTCACTTTCTCGGAAGCAATCTAAAAGAAAATTGATGATGACTCCATAGGATGCACTATCACGTGTTGGTTTGCACAGATTCAGATGCACATCAGCGATATGGTAGACCGCTCCTTGCTCGAAAACTGCAGACTTGTTGGGTACGACGATGCTCTTGGCGTTAGCTGTAAAAACAACGAATTTTCCATGAAATCAATATCAGGGTTGTGCGGAATATAACTTTTCGAAATTACGAAATCTTTGGATATCCCGAATTGAACAAAATCGATAACCTGGAACGTAGGATATTCTTAATTTTCAGAAAATCAGAATTTCGAAATGTAATATTTTGGCGGAAATTTCATTCCGAAAAAT</canonical>
            <polymorphic>AGCCTCTTCTCTCATATTCGTCATGAGTCACAGCGACATCTTCAAAATTTAACAATCTAAATCATGATTTTCTTATTTTTCTGTATTTTTCCCCTAATTTTGTTCATTTTCATGTATAATTATTTTTTTTAATAAATAAAATTCTACATAATGCGCTGTTTCTTTATAAAAACATCAATAAACGCGAACCGAACCGGCCCCTGCTGTTAGAAGGCCGGAAGTTGGCCGGTAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAATCTGACCAAGTTCCGTCCTGAAGCCGACCAGCCTCCGGCCAGAAGTTGCCGGCGACGCCCGAGTAAATACACATTTCTGATGCACAGATTGAAAAAAACAAACATTTTTAAAAATTAGAAATTTTATGCAAGAAAATTAACCTAATGCAAGGAAACAGGGGGTTCGGTGAAGATAATCAGCAAAATTTTTGCCTAGAACATGATACTTCTATCAGAAATTTTGGRAGAAACCGTACAGTATGTACTCAGTGAATGGCTCGTTTGTTTTTGCTGGGAGGGAGAAAAGTGAGAGTTTTCACAACTACTTATTACAGGGAGGTTTTGAACAATATTTACAAGGGTGCACGACAGTGTTAGACTTTTCGCTTTTTGTCACTTTCTCGGAAGCAATCTAAAAGAAAATTGATGATGACTCCATAGGATGCACTATCACGTGTTGGTTTGCACAGATTCAGATGCACATCAGCGATATGGTAGACCGCTCCTTGCTCGAAAACTGCAGACTTGTTGGGTACGACGATGCTCTTGGCGTTAGCTGTAAAAACAACGAATTTTCCATGAAATCAATATCAGGGTTGTGCGGAATATAACTTTTCGAAATTACGAAATCTTTGGATATCCCGAATTGAACAAAATCGATAACCTGGAACGTAGGATATTCTTAATTTTCAGAAAATCAGAATTTCGAAATGTAATATTTTGGCGGAAATTTCATTCCGAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATGCAAGAAAATTAACCTAATG</pcr_primer_p1>
		<pcr_primer_p2>GACAAAAAGCGAAAAGTCTAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTATGCAAGAAAATTAACCTAATGCAAGGAAACAGGGGGTTCGGTGAAGATAATCAGCAAAATTTTTGCCTAGAACATGATACTTCTATCAGAAATTTTGGGAGAAACCGTACAGTATGTACTCAGTGAATGGCTCGTTTGTTTTTGCTGGGAGGGAGAAAAGTGAGAGTTTTCACAACTACTTATTACAGGGAGGTTTTGAACAATATTTACAAGGGTGCACGACAGTGTTAGACTTTTCGCTTTTTGTC</canonical_amplicon>
		<polymorphic_amplicon>TTATGCAAGAAAATTAACCTAATGCAAGGAAACAGGGGGTTCGGTGAAGATAATCAGCAAAATTTTTGCCTAGAACATGATACTTCTATCAGAAATTTTGGRAGAAACCGTACAGTATGTACTCAGTGAATGGCTCGTTTGTTTTTGCTGGGAGGGAGAAAAGTGAGAGTTTTCACAACTACTTATTACAGGGAGGTTTTGAACAATATTTACAAGGGTGCACGACAGTGTTAGACTTTTCGCTTTTTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36747</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>468196</contig_pos>
        <strand></strand>
        <context>GTACAGTATG[T/C]ACTCAGTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTAGAACATGATACTTCTATCAGAAATTTTGGGAGAAACCGTACAGTATG</left_flank>
        <right_flank>ACTCAGTGAATGGCTCGTTTGTTTTTGCTGGGAGGGAGAAAAGTGAGAGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTCATGAGTCACAGCGACATCTTCAAAATTTAACAATCTAAATCATGATTTTCTTATTTTTCTGTATTTTTCCCCTAATTTTGTTCATTTTCATGTATAATTATTTTTTTTAATAAATAAAATTCTACATAATGCGCTGTTTCTTTATAAAAACATCAATAAACGCGAACCGAACCGGCCCCTGCTGTTAGAAGGCCGGAAGTTGGCCGGTAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAATCTGACCAAGTTCCGTCCTGAAGCCGACCAGCCTCCGGCCAGAAGTTGCCGGCGACGCCCGAGTAAATACACATTTCTGATGCACAGATTGAAAAAAACAAACATTTTTAAAAATTAGAAATTTTATGCAAGAAAATTAACCTAATGCAAGGAAACAGGGGGTTCGGTGAAGATAATCAGCAAAATTTTTGCCTAGAACATGATACTTCTATCAGAAATTTTGGGAGAAACCGTACAGTATGTACTCAGTGAATGGCTCGTTTGTTTTTGCTGGGAGGGAGAAAAGTGAGAGTTTTCACAACTACTTATTACAGGGAGGTTTTGAACAATATTTACAAGGGTGCACGACAGTGTTAGACTTTTCGCTTTTTGTCACTTTCTCGGAAGCAATCTAAAAGAAAATTGATGATGACTCCATAGGATGCACTATCACGTGTTGGTTTGCACAGATTCAGATGCACATCAGCGATATGGTAGACCGCTCCTTGCTCGAAAACTGCAGACTTGTTGGGTACGACGATGCTCTTGGCGTTAGCTGTAAAAACAACGAATTTTCCATGAAATCAATATCAGGGTTGTGCGGAATATAACTTTTCGAAATTACGAAATCTTTGGATATCCCGAATTGAACAAAATCGATAACCTGGAACGTAGGATATTCTTAATTTTCAGAAAATCAGAATTTCGAAATGTAATATTTTGGCGGAAATTTCATTCCGAAAAATCTCTGAATTTTTTGAATT</canonical>
            <polymorphic>CGTCATGAGTCACAGCGACATCTTCAAAATTTAACAATCTAAATCATGATTTTCTTATTTTTCTGTATTTTTCCCCTAATTTTGTTCATTTTCATGTATAATTATTTTTTTTAATAAATAAAATTCTACATAATGCGCTGTTTCTTTATAAAAACATCAATAAACGCGAACCGAACCGGCCCCTGCTGTTAGAAGGCCGGAAGTTGGCCGGTAGTTTGTCGGATCTTGGTCGGCTTCCCACAATGTCTTTGCCGGAATCTGACCAAGTTCCGTCCTGAAGCCGACCAGCCTCCGGCCAGAAGTTGCCGGCGACGCCCGAGTAAATACACATTTCTGATGCACAGATTGAAAAAAACAAACATTTTTAAAAATTAGAAATTTTATGCAAGAAAATTAACCTAATGCAAGGAAACAGGGGGTTCGGTGAAGATAATCAGCAAAATTTTTGCCTAGAACATGATACTTCTATCAGAAATTTTGGGAGAAACCGTACAGTATGYACTCAGTGAATGGCTCGTTTGTTTTTGCTGGGAGGGAGAAAAGTGAGAGTTTTCACAACTACTTATTACAGGGAGGTTTTGAACAATATTTACAAGGGTGCACGACAGTGTTAGACTTTTCGCTTTTTGTCACTTTCTCGGAAGCAATCTAAAAGAAAATTGATGATGACTCCATAGGATGCACTATCACGTGTTGGTTTGCACAGATTCAGATGCACATCAGCGATATGGTAGACCGCTCCTTGCTCGAAAACTGCAGACTTGTTGGGTACGACGATGCTCTTGGCGTTAGCTGTAAAAACAACGAATTTTCCATGAAATCAATATCAGGGTTGTGCGGAATATAACTTTTCGAAATTACGAAATCTTTGGATATCCCGAATTGAACAAAATCGATAACCTGGAACGTAGGATATTCTTAATTTTCAGAAAATCAGAATTTCGAAATGTAATATTTTGGCGGAAATTTCATTCCGAAAAATCTCTGAATTTTTTGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>491 270 230 9</canonical_bands>
                <polymorphic_bands>491 279 230</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTTTTGCCTAGAACATGATA</pcr_primer_p1>
		<pcr_primer_p2>ATAGTGCATCCTATGGAGTCAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAATTTTTGCCTAGAACATGATACTTCTATCAGAAATTTTGGGAGAAACCGTACAGTATGTACTCAGTGAATGGCTCGTTTGTTTTTGCTGGGAGGGAGAAAAGTGAGAGTTTTCACAACTACTTATTACAGGGAGGTTTTGAACAATATTTACAAGGGTGCACGACAGTGTTAGACTTTTCGCTTTTTGTCACTTTCTCGGAAGCAATCTAAAAGAAAATTGATGATGACTCCATAGGATGCACTAT</canonical_amplicon>
		<polymorphic_amplicon>AAATTTTTGCCTAGAACATGATACTTCTATCAGAAATTTTGGGAGAAACCGTACAGTATGYACTCAGTGAATGGCTCGTTTGTTTTTGCTGGGAGGGAGAAAAGTGAGAGTTTTCACAACTACTTATTACAGGGAGGTTTTGAACAATATTTACAAGGGTGCACGACAGTGTTAGACTTTTCGCTTTTTGTCACTTTCTCGGAAGCAATCTAAAAGAAAATTGATGATGACTCCATAGGATGCACTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36748</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>469636</contig_pos>
        <strand></strand>
        <context>TGGAGAACta[A/G]aaattaaaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTCACGGAATTTTCTTGGAATTTTCAGTTTTCAGCAGCTGGAGAACTA</left_flank>
        <right_flank>AAATTAAAAAAAAATTATGTTAAAGGAGGCGAGACAGCAAAAATTTCGGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATTTCCAGCTGGTCTTTGAACCTTTCTGATCTACTCTGGAAGAGAAAAAAGTATAAGAGAGCAGAAATATATTTAAAATTCACCTGAAGGCTCTGTTGTGTGCCTGTGAAATGAAAAATATAGGATGGATACTCGAGCCCTATTATTCGAAATGGTCTCTTGATATCTAGAGGGAGCCAGTCTTTTGGCCAGCATGAGGATAAGAGGTTCTCGTCAGAGTCTTTCTGTCGCCATGTGTAAGCCACACTTCCTCGGAGTCCATGGATCAAGACAATGTCAAACTGAAAATAAAGGTAGAGTATCGGTCAATAAGATATACAACGCCATGTTTTTCAGTTGATTTTCAGCAATTTTGACCATTTTCAGAGATCTGGAGCTCAGCTTTCAAGTTTCCAATCAATTTGAAAACTTTGGAGGATGCCAAACATACCTAGATTGAAAACTGTGCATTCACGGAATTTTCTTGGAATTTTCAGTTTTCAGCAGCTGGAGAACTAAAAATTAAAAAAAAATTATGTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGAGGGACAAAATCGCGCCGCGCTTATGTAGACCATCGGTCGTCCGGCGCTGTACCCCTGAGCTGCCTGTCATGAGTTCAACTCCTCATGGGGGTTCTCTATGCAGAATATCAGGAAAACTTTTTTTTGGTATCTGGCCTCATTTAATGCAAATTTTTCTATCCAGGTCTGTTTAACACTCTCCAAATTGTTCAACGTAATTGGTAACTTAACAGCCAAGCTCCAGACTCCTGAATATGATCACAATAGCCGAAAATCAACTGATAGACATGTTGAAATCTAATTTCAACGATTTTTAGCTTTTTCCGATTTCTATGATATCATTTTTCACCCTTCTTTGACTCAACGTTCATTCTTAATGACAACAAATCTCGCACTTTCTGTGTCGTCCTAACATCACAAAGCTAAGATCACATTTTGCTCGACACTATGTGTAACCCCA</canonical>
            <polymorphic>CTATTTCCAGCTGGTCTTTGAACCTTTCTGATCTACTCTGGAAGAGAAAAAAGTATAAGAGAGCAGAAATATATTTAAAATTCACCTGAAGGCTCTGTTGTGTGCCTGTGAAATGAAAAATATAGGATGGATACTCGAGCCCTATTATTCGAAATGGTCTCTTGATATCTAGAGGGAGCCAGTCTTTTGGCCAGCATGAGGATAAGAGGTTCTCGTCAGAGTCTTTCTGTCGCCATGTGTAAGCCACACTTCCTCGGAGTCCATGGATCAAGACAATGTCAAACTGAAAATAAAGGTAGAGTATCGGTCAATAAGATATACAACGCCATGTTTTTCAGTTGATTTTCAGCAATTTTGACCATTTTCAGAGATCTGGAGCTCAGCTTTCAAGTTTCCAATCAATTTGAAAACTTTGGAGGATGCCAAACATACCTAGATTGAAAACTGTGCATTCACGGAATTTTCTTGGAATTTTCAGTTTTCAGCAGCTGGAGAACTARAAATTAAAAAAAAATTATGTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGAGGGACAAAATCGCGCCGCGCTTATGTAGACCATCGGTCGTCCGGCGCTGTACCCCTGAGCTGCCTGTCATGAGTTCAACTCCTCATGGGGGTTCTCTATGCAGAATATCAGGAAAACTTTTTTTTGGTATCTGGCCTCATTTAATGCAAATTTTTCTATCCAGGTCTGTTTAACACTCTCCAAATTGTTCAACGTAATTGGTAACTTAACAGCCAAGCTCCAGACTCCTGAATATGATCACAATAGCCGAAAATCAACTGATAGACATGTTGAAATCTAATTTCAACGATTTTTAGCTTTTTCCGATTTCTATGATATCATTTTTCACCCTTCTTTGACTCAACGTTCATTCTTAATGACAACAAATCTCGCACTTTCTGTGTCGTCCTAACATCACAAAGCTAAGATCACATTTTGCTCGACACTATGTGTAACCCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTCAAACTGAAAATAAAGGTAG</pcr_primer_p1>
		<pcr_primer_p2>GACCGATGGTCTACATAAGC</pcr_primer_p2>
		<pcr_amplicon_size>325</pcr_amplicon_size>
		<canonical_amplicon>AATGTCAAACTGAAAATAAAGGTAGAGTATCGGTCAATAAGATATACAACGCCATGTTTTTCAGTTGATTTTCAGCAATTTTGACCATTTTCAGAGATCTGGAGCTCAGCTTTCAAGTTTCCAATCAATTTGAAAACTTTGGAGGATGCCAAACATACCTAGATTGAAAACTGTGCATTCACGGAATTTTCTTGGAATTTTCAGTTTTCAGCAGCTGGAGAACTAAAAATTAAAAAAAAATTATGTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGAGGGACAAAATCGCGCCGCGCTTATGTAGACCATCGGTC</canonical_amplicon>
		<polymorphic_amplicon>AATGTCAAACTGAAAATAAAGGTAGAGTATCGGTCAATAAGATATACAACGCCATGTTTTTCAGTTGATTTTCAGCAATTTTGACCATTTTCAGAGATCTGGAGCTCAGCTTTCAAGTTTCCAATCAATTTGAAAACTTTGGAGGATGCCAAACATACCTAGATTGAAAACTGTGCATTCACGGAATTTTCTTGGAATTTTCAGTTTTCAGCAGCTGGAGAACTARAAATTAAAAAAAAATTATGTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGAGGGACAAAATCGCGCCGCGCTTATGTAGACCATCGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36749</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>469959</contig_pos>
        <strand></strand>
        <context>aatcaactga[T/A]agacatgttG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GCCAAGCTCCAGACTCCTGAATATGATCACAATAGCCGAAAATCAACTGA</left_flank>
        <right_flank>AGACATGTTGAAATCTAATTTCAACGATTTTTAGCTTTTTCCGATTTCTA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCCATGTTTTTCAGTTGATTTTCAGCAATTTTGACCATTTTCAGAGATCTGGAGCTCAGCTTTCAAGTTTCCAATCAATTTGAAAACTTTGGAGGATGCCAAACATACCTAGATTGAAAACTGTGCATTCACGGAATTTTCTTGGAATTTTCAGTTTTCAGCAGCTGGAGAACTAAAAATTAAAAAAAAATTATGTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGAGGGACAAAATCGCGCCGCGCTTATGTAGACCATCGGTCGTCCGGCGCTGTACCCCTGAGCTGCCTGTCATGAGTTCAACTCCTCATGGGGGTTCTCTATGCAGAATATCAGGAAAACTTTTTTTTGGTATCTGGCCTCATTTAATGCAAATTTTTCTATCCAGGTCTGTTTAACACTCTCCAAATTGTTCAACGTAATTGGTAACTTAACAGCCAAGCTCCAGACTCCTGAATATGATCACAATAGCCGAAAATCAACTGATAGACATGTTGAAATCTAATTTCAACGATTTTTAGCTTTTTCCGATTTCTATGATATCATTTTTCACCCTTCTTTGACTCAACGTTCATTCTTAATGACAACAAATCTCGCACTTTCTGTGTCGTCCTAACATCACAAAGCTAAGATCACATTTTGCTCGACACTATGTGTAACCCCACGTGACGACACTGCAGACTAACAGTGTAATATCTCTGTTTTTGATGAATGAGTCCTCTGGCACGTCATATCTGTGAAACAAAAGAAAAAAAATTACCTCTGGCTCCTCATCCGGTAAATGCATCTCATAGACATCTGATGAAAGTCGGTAGTTGATGGATTTCAGAGAGCTCAGCGCGTTCTGGCATACCTGAGAAGGTTTGTGTTATACTTGTCGGCATGACGAATTTTCAATTATGCCGGCTCATAACTCGCTTCAGAATTGAAATTGTGGGCAAAACAAAACACTGGGTCATAGAGCACAGCAAGTTCTACAACCTCCAA</canonical>
            <polymorphic>CGCCATGTTTTTCAGTTGATTTTCAGCAATTTTGACCATTTTCAGAGATCTGGAGCTCAGCTTTCAAGTTTCCAATCAATTTGAAAACTTTGGAGGATGCCAAACATACCTAGATTGAAAACTGTGCATTCACGGAATTTTCTTGGAATTTTCAGTTTTCAGCAGCTGGAGAACTAAAAATTAAAAAAAAATTATGTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGAGGGACAAAATCGCGCCGCGCTTATGTAGACCATCGGTCGTCCGGCGCTGTACCCCTGAGCTGCCTGTCATGAGTTCAACTCCTCATGGGGGTTCTCTATGCAGAATATCAGGAAAACTTTTTTTTGGTATCTGGCCTCATTTAATGCAAATTTTTCTATCCAGGTCTGTTTAACACTCTCCAAATTGTTCAACGTAATTGGTAACTTAACAGCCAAGCTCCAGACTCCTGAATATGATCACAATAGCCGAAAATCAACTGAWAGACATGTTGAAATCTAATTTCAACGATTTTTAGCTTTTTCCGATTTCTATGATATCATTTTTCACCCTTCTTTGACTCAACGTTCATTCTTAATGACAACAAATCTCGCACTTTCTGTGTCGTCCTAACATCACAAAGCTAAGATCACATTTTGCTCGACACTATGTGTAACCCCACGTGACGACACTGCAGACTAACAGTGTAATATCTCTGTTTTTGATGAATGAGTCCTCTGGCACGTCATATCTGTGAAACAAAAGAAAAAAAATTACCTCTGGCTCCTCATCCGGTAAATGCATCTCATAGACATCTGATGAAAGTCGGTAGTTGATGGATTTCAGAGAGCTCAGCGCGTTCTGGCATACCTGAGAAGGTTTGTGTTATACTTGTCGGCATGACGAATTTTCAATTATGCCGGCTCATAACTCGCTTCAGAATTGAAATTGTGGGCAAAACAAAACACTGGGTCATAGAGCACAGCAAGTTCTACAACCTCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTATGCAGAATATCAGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAGAAGGGTGAAAAATGATA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CTCTATGCAGAATATCAGGAAAACTTTTTTTTGGTATCTGGCCTCATTTAATGCAAATTTTTCTATCCAGGTCTGTTTAACACTCTCCAAATTGTTCAACGTAATTGGTAACTTAACAGCCAAGCTCCAGACTCCTGAATATGATCACAATAGCCGAAAATCAACTGATAGACATGTTGAAATCTAATTTCAACGATTTTTAGCTTTTTCCGATTTCTATGATATCATTTTTCACCCTTCTTTG</canonical_amplicon>
		<polymorphic_amplicon>CTCTATGCAGAATATCAGGAAAACTTTTTTTTGGTATCTGGCCTCATTTAATGCAAATTTTTCTATCCAGGTCTGTTTAACACTCTCCAAATTGTTCAACGTAATTGGTAACTTAACAGCCAAGCTCCAGACTCCTGAATATGATCACAATAGCCGAAAATCAACTGAWAGACATGTTGAAATCTAATTTCAACGATTTTTAGCTTTTTCCGATTTCTATGATATCATTTTTCACCCTTCTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36750</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>490437</contig_pos>
        <strand>+</strand>
        <context>TCAGAAGCTT[A/G]GATTCATGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTCAGTAACAACAAAACTGTTACGTCGCATATAAAGATTCAGAAGCTT</left_flank>
        <right_flank>GATTCATGGGGTTAAAAAACAATTCAAAATAGTCTCGAGTATCCCAGGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCTTTGACGGATCACTACAAGGCTTTGGCTTTAATCGAGCACGTGAGTTGGTGGGATTTATGACCGTGGATTAGGATTTTTTCTAGATCTCAATTTTTTAATCCGTTCTTTTTTCTTCATATTTTCTCAAGTCCACCGACCCTTAATCCATCTGATTCTATTCTCAGTTCAGCTTTTCTCTCAACGAGGCTCTTTTCCTGATTTAATCTCGAGATCTTCATCGTGTTGCTTCTCAGCTCTCACGTTTCCATTGACAACCACCGCGCCGGCAAACTTTTTTGGGAATCTTGAGCCGTAGATTGAATTCGTGGCAACAAGGAAATTGCTAGCTAGATATTAAATAGAAGAGACAGATTGATATTATGCGCGATTGATAACTACCGAAATTTCGAAAAGTGAGCTGGGAAATTAACATGTGGAAACTCAGATGTTCTCGCTTTGTCATGGAGTTTCAGTAACAACAAAACTGTTACGTCGCATATAAAGATTCAGAAGCTTAGATTCATGGGGTTAAAAAACAATTCAAAATAGTCTCGAGTATCCCAGGATTTTCAATAAGCCCAGTCGAAACCAGTGCGTCCGTACCCTCTAGCTCATCAAGAACTGCAAAGATTCGTACCACTTTTCGAGGCTAAAACGATTGGTTTTTATTTCTAAAAATCCGCAATACTTATTTTGCGGGTCTCAACGCGCCAGAGGTGTACGGTCGAACTGGTTTTGACTGTGCAAATTGAACATCCTGGTAGTCTGAACGGCACTTTGGACTGCTGTCAGGGCCCCAGAAATTTTAGATTCGGGAACTTTGGACGCGGAATCAGCTCTCATTGAGGGAAATAGACCTGAAATCTTTTAACTATCGTTTTCCGTCTCTCATATCAAATTCATATTCGAGTAGCTTCTAATTTCTTATTGTCATGTTCGCAGGTTGATTTGTTGAAAACTCATGATTATGTTTAGAATACAATGAGAATTCGTTTATAGAAATTACCAAGTTCTTGA</canonical>
            <polymorphic>GGCTTTGACGGATCACTACAAGGCTTTGGCTTTAATCGAGCACGTGAGTTGGTGGGATTTATGACCGTGGATTAGGATTTTTTCTAGATCTCAATTTTTTAATCCGTTCTTTTTTCTTCATATTTTCTCAAGTCCACCGACCCTTAATCCATCTGATTCTATTCTCAGTTCAGCTTTTCTCTCAACGAGGCTCTTTTCCTGATTTAATCTCGAGATCTTCATCGTGTTGCTTCTCAGCTCTCACGTTTCCATTGACAACCACCGCGCCGGCAAACTTTTTTGGGAATCTTGAGCCGTAGATTGAATTCGTGGCAACAAGGAAATTGCTAGCTAGATATTAAATAGAAGAGACAGATTGATATTATGCGCGATTGATAACTACCGAAATTTCGAAAAGTGAGCTGGGAAATTAACATGTGGAAACTCAGATGTTCTCGCTTTGTCATGGAGTTTCAGTAACAACAAAACTGTTACGTCGCATATAAAGATTCAGAAGCTTRGATTCATGGGGTTAAAAAACAATTCAAAATAGTCTCGAGTATCCCAGGATTTTCAATAAGCCCAGTCGAAACCAGTGCGTCCGTACCCTCTAGCTCATCAAGAACTGCAAAGATTCGTACCACTTTTCGAGGCTAAAACGATTGGTTTTTATTTCTAAAAATCCGCAATACTTATTTTGCGGGTCTCAACGCGCCAGAGGTGTACGGTCGAACTGGTTTTGACTGTGCAAATTGAACATCCTGGTAGTCTGAACGGCACTTTGGACTGCTGTCAGGGCCCCAGAAATTTTAGATTCGGGAACTTTGGACGCGGAATCAGCTCTCATTGAGGGAAATAGACCTGAAATCTTTTAACTATCGTTTTCCGTCTCTCATATCAAATTCATATTCGAGTAGCTTCTAATTTCTTATTGTCATGTTCGCAGGTTGATTTGTTGAAAACTCATGATTATGTTTAGAATACAATGAGAATTCGTTTATAGAAATTACCAAGTTCTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 191 164 73 69</canonical_bands>
                <polymorphic_bands>576 191 164 69</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATTATGCGCGATTGATAACTA</pcr_primer_p1>
		<pcr_primer_p2>GCAGTTCTTGATGAGCTAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATTATGCGCGATTGATAACTACCGAAATTTCGAAAAGTGAGCTGGGAAATTAACATGTGGAAACTCAGATGTTCTCGCTTTGTCATGGAGTTTCAGTAACAACAAAACTGTTACGTCGCATATAAAGATTCAGAAGCTTAGATTCATGGGGTTAAAAAACAATTCAAAATAGTCTCGAGTATCCCAGGATTTTCAATAAGCCCAGTCGAAACCAGTGCGTCCGTACCCTCTAGCTCATCAAGAACTGC</canonical_amplicon>
		<polymorphic_amplicon>ATATTATGCGCGATTGATAACTACCGAAATTTCGAAAAGTGAGCTGGGAAATTAACATGTGGAAACTCAGATGTTCTCGCTTTGTCATGGAGTTTCAGTAACAACAAAACTGTTACGTCGCATATAAAGATTCAGAAGCTTRGATTCATGGGGTTAAAAAACAATTCAAAATAGTCTCGAGTATCCCAGGATTTTCAATAAGCCCAGTCGAAACCAGTGCGTCCGTACCCTCTAGCTCATCAAGAACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36751</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>490477</contig_pos>
        <strand>+</strand>
        <context>TAGTCTCGAG[A/T]WTCCCAGGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAGAAGCTTAGATTCATGGGGTTAAAAAACAATTCAAAATAGTCTCGAG</left_flank>
        <right_flank>ATCCCAGGATTTTCAATAAGCCCAGTCGAAACCAGTGCGTCCGTACCCTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACGTGAGTTGGTGGGATTTATGACCGTGGATTAGGATTTTTTCTAGATCTCAATTTTTTAATCCGTTCTTTTTTCTTCATATTTTCTCAAGTCCACCGACCCTTAATCCATCTGATTCTATTCTCAGTTCAGCTTTTCTCTCAACGAGGCTCTTTTCCTGATTTAATCTCGAGATCTTCATCGTGTTGCTTCTCAGCTCTCACGTTTCCATTGACAACCACCGCGCCGGCAAACTTTTTTGGGAATCTTGAGCCGTAGATTGAATTCGTGGCAACAAGGAAATTGCTAGCTAGATATTAAATAGAAGAGACAGATTGATATTATGCGCGATTGATAACTACCGAAATTTCGAAAAGTGAGCTGGGAAATTAACATGTGGAAACTCAGATGTTCTCGCTTTGTCATGGAGTTTCAGTAACAACAAAACTGTTACGTCGCATATAAAGATTCAGAAGCTTAGATTCATGGGGTTAAAAAACAATTCAAAATAGTCTCGAGTATCCCAGGATTTTCAATAAGCCCAGTCGAAACCAGTGCGTCCGTACCCTCTAGCTCATCAAGAACTGCAAAGATTCGTACCACTTTTCGAGGCTAAAACGATTGGTTTTTATTTCTAAAAATCCGCAATACTTATTTTGCGGGTCTCAACGCGCCAGAGGTGTACGGTCGAACTGGTTTTGACTGTGCAAATTGAACATCCTGGTAGTCTGAACGGCACTTTGGACTGCTGTCAGGGCCCCAGAAATTTTAGATTCGGGAACTTTGGACGCGGAATCAGCTCTCATTGAGGGAAATAGACCTGAAATCTTTTAACTATCGTTTTCCGTCTCTCATATCAAATTCATATTCGAGTAGCTTCTAATTTCTTATTGTCATGTTCGCAGGTTGATTTGTTGAAAACTCATGATTATGTTTAGAATACAATGAGAATTCGTTTATAGAAATTACCAAGTTCTTGAGATATAAGAAGGAGCGATTTTCAAAATTTTCAATTTTCAT</canonical>
            <polymorphic>CACGTGAGTTGGTGGGATTTATGACCGTGGATTAGGATTTTTTCTAGATCTCAATTTTTTAATCCGTTCTTTTTTCTTCATATTTTCTCAAGTCCACCGACCCTTAATCCATCTGATTCTATTCTCAGTTCAGCTTTTCTCTCAACGAGGCTCTTTTCCTGATTTAATCTCGAGATCTTCATCGTGTTGCTTCTCAGCTCTCACGTTTCCATTGACAACCACCGCGCCGGCAAACTTTTTTGGGAATCTTGAGCCGTAGATTGAATTCGTGGCAACAAGGAAATTGCTAGCTAGATATTAAATAGAAGAGACAGATTGATATTATGCGCGATTGATAACTACCGAAATTTCGAAAAGTGAGCTGGGAAATTAACATGTGGAAACTCAGATGTTCTCGCTTTGTCATGGAGTTTCAGTAACAACAAAACTGTTACGTCGCATATAAAGATTCAGAAGCTTAGATTCATGGGGTTAAAAAACAATTCAAAATAGTCTCGAGWATCCCAGGATTTTCAATAAGCCCAGTCGAAACCAGTGCGTCCGTACCCTCTAGCTCATCAAGAACTGCAAAGATTCGTACCACTTTTCGAGGCTAAAACGATTGGTTTTTATTTCTAAAAATCCGCAATACTTATTTTGCGGGTCTCAACGCGCCAGAGGTGTACGGTCGAACTGGTTTTGACTGTGCAAATTGAACATCCTGGTAGTCTGAACGGCACTTTGGACTGCTGTCAGGGCCCCAGAAATTTTAGATTCGGGAACTTTGGACGCGGAATCAGCTCTCATTGAGGGAAATAGACCTGAAATCTTTTAACTATCGTTTTCCGTCTCTCATATCAAATTCATATTCGAGTAGCTTCTAATTTCTTATTGTCATGTTCGCAGGTTGATTTGTTGAAAACTCATGATTATGTTTAGAATACAATGAGAATTCGTTTATAGAAATTACCAAGTTCTTGAGATATAAGAAGGAGCGATTTTCAAAATTTTCAATTTTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTATGCGCGATTGATAACTA</pcr_primer_p1>
		<pcr_primer_p2>GCAGTTCTTGATGAGCTAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATTATGCGCGATTGATAACTACCGAAATTTCGAAAAGTGAGCTGGGAAATTAACATGTGGAAACTCAGATGTTCTCGCTTTGTCATGGAGTTTCAGTAACAACAAAACTGTTACGTCGCATATAAAGATTCAGAAGCTTAGATTCATGGGGTTAAAAAACAATTCAAAATAGTCTCGAGTATCCCAGGATTTTCAATAAGCCCAGTCGAAACCAGTGCGTCCGTACCCTCTAGCTCATCAAGAACTGC</canonical_amplicon>
		<polymorphic_amplicon>ATATTATGCGCGATTGATAACTACCGAAATTTCGAAAAGTGAGCTGGGAAATTAACATGTGGAAACTCAGATGTTCTCGCTTTGTCATGGAGTTTCAGTAACAACAAAACTGTTACGTCGCATATAAAGATTCAGAAGCTTAGATTCATGGGGTTAAAAAACAATTCAAAATAGTCTCGAGWATCCCAGGATTTTCAATAAGCCCAGTCGAAACCAGTGCGTCCGTACCCTCTAGCTCATCAAGAACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36752</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>490478</contig_pos>
        <strand>+</strand>
        <context>AGTCTCGAGW[A/T]TCCCAGGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGAAGCTTAGATTCATGGGGTTAAAAAACAATTCAAAATAGTCTCGAGT</left_flank>
        <right_flank>TCCCAGGATTTTCAATAAGCCCAGTCGAAACCAGTGCGTCCGTACCCTCT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGTGAGTTGGTGGGATTTATGACCGTGGATTAGGATTTTTTCTAGATCTCAATTTTTTAATCCGTTCTTTTTTCTTCATATTTTCTCAAGTCCACCGACCCTTAATCCATCTGATTCTATTCTCAGTTCAGCTTTTCTCTCAACGAGGCTCTTTTCCTGATTTAATCTCGAGATCTTCATCGTGTTGCTTCTCAGCTCTCACGTTTCCATTGACAACCACCGCGCCGGCAAACTTTTTTGGGAATCTTGAGCCGTAGATTGAATTCGTGGCAACAAGGAAATTGCTAGCTAGATATTAAATAGAAGAGACAGATTGATATTATGCGCGATTGATAACTACCGAAATTTCGAAAAGTGAGCTGGGAAATTAACATGTGGAAACTCAGATGTTCTCGCTTTGTCATGGAGTTTCAGTAACAACAAAACTGTTACGTCGCATATAAAGATTCAGAAGCTTAGATTCATGGGGTTAAAAAACAATTCAAAATAGTCTCGAGTATCCCAGGATTTTCAATAAGCCCAGTCGAAACCAGTGCGTCCGTACCCTCTAGCTCATCAAGAACTGCAAAGATTCGTACCACTTTTCGAGGCTAAAACGATTGGTTTTTATTTCTAAAAATCCGCAATACTTATTTTGCGGGTCTCAACGCGCCAGAGGTGTACGGTCGAACTGGTTTTGACTGTGCAAATTGAACATCCTGGTAGTCTGAACGGCACTTTGGACTGCTGTCAGGGCCCCAGAAATTTTAGATTCGGGAACTTTGGACGCGGAATCAGCTCTCATTGAGGGAAATAGACCTGAAATCTTTTAACTATCGTTTTCCGTCTCTCATATCAAATTCATATTCGAGTAGCTTCTAATTTCTTATTGTCATGTTCGCAGGTTGATTTGTTGAAAACTCATGATTATGTTTAGAATACAATGAGAATTCGTTTATAGAAATTACCAAGTTCTTGAGATATAAGAAGGAGCGATTTTCAAAATTTTCAATTTTCATC</canonical>
            <polymorphic>ACGTGAGTTGGTGGGATTTATGACCGTGGATTAGGATTTTTTCTAGATCTCAATTTTTTAATCCGTTCTTTTTTCTTCATATTTTCTCAAGTCCACCGACCCTTAATCCATCTGATTCTATTCTCAGTTCAGCTTTTCTCTCAACGAGGCTCTTTTCCTGATTTAATCTCGAGATCTTCATCGTGTTGCTTCTCAGCTCTCACGTTTCCATTGACAACCACCGCGCCGGCAAACTTTTTTGGGAATCTTGAGCCGTAGATTGAATTCGTGGCAACAAGGAAATTGCTAGCTAGATATTAAATAGAAGAGACAGATTGATATTATGCGCGATTGATAACTACCGAAATTTCGAAAAGTGAGCTGGGAAATTAACATGTGGAAACTCAGATGTTCTCGCTTTGTCATGGAGTTTCAGTAACAACAAAACTGTTACGTCGCATATAAAGATTCAGAAGCTTAGATTCATGGGGTTAAAAAACAATTCAAAATAGTCTCGAGTWTCCCAGGATTTTCAATAAGCCCAGTCGAAACCAGTGCGTCCGTACCCTCTAGCTCATCAAGAACTGCAAAGATTCGTACCACTTTTCGAGGCTAAAACGATTGGTTTTTATTTCTAAAAATCCGCAATACTTATTTTGCGGGTCTCAACGCGCCAGAGGTGTACGGTCGAACTGGTTTTGACTGTGCAAATTGAACATCCTGGTAGTCTGAACGGCACTTTGGACTGCTGTCAGGGCCCCAGAAATTTTAGATTCGGGAACTTTGGACGCGGAATCAGCTCTCATTGAGGGAAATAGACCTGAAATCTTTTAACTATCGTTTTCCGTCTCTCATATCAAATTCATATTCGAGTAGCTTCTAATTTCTTATTGTCATGTTCGCAGGTTGATTTGTTGAAAACTCATGATTATGTTTAGAATACAATGAGAATTCGTTTATAGAAATTACCAAGTTCTTGAGATATAAGAAGGAGCGATTTTCAAAATTTTCAATTTTCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTATGCGCGATTGATAACTA</pcr_primer_p1>
		<pcr_primer_p2>GCAGTTCTTGATGAGCTAGAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATTATGCGCGATTGATAACTACCGAAATTTCGAAAAGTGAGCTGGGAAATTAACATGTGGAAACTCAGATGTTCTCGCTTTGTCATGGAGTTTCAGTAACAACAAAACTGTTACGTCGCATATAAAGATTCAGAAGCTTAGATTCATGGGGTTAAAAAACAATTCAAAATAGTCTCGAGTATCCCAGGATTTTCAATAAGCCCAGTCGAAACCAGTGCGTCCGTACCCTCTAGCTCATCAAGAACTGC</canonical_amplicon>
		<polymorphic_amplicon>ATATTATGCGCGATTGATAACTACCGAAATTTCGAAAAGTGAGCTGGGAAATTAACATGTGGAAACTCAGATGTTCTCGCTTTGTCATGGAGTTTCAGTAACAACAAAACTGTTACGTCGCATATAAAGATTCAGAAGCTTAGATTCATGGGGTTAAAAAACAATTCAAAATAGTCTCGAGTWTCCCAGGATTTTCAATAAGCCCAGTCGAAACCAGTGCGTCCGTACCCTCTAGCTCATCAAGAACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36753</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>490577</contig_pos>
        <strand>+</strand>
        <context>AGGCTAAAAC[A/G]ATTGGTTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAGCTCATCAAGAACTGCAAAGATTCGTACCACTTTTCGAGGCTAAAAC</left_flank>
        <right_flank>ATTGGTTTTTATTTCTAAAAATCCGCAATACTTATTTTGCGGGTCTCAAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCTTAATCCATCTGATTCTATTCTCAGTTCAGCTTTTCTCTCAACGAGGCTCTTTTCCTGATTTAATCTCGAGATCTTCATCGTGTTGCTTCTCAGCTCTCACGTTTCCATTGACAACCACCGCGCCGGCAAACTTTTTTGGGAATCTTGAGCCGTAGATTGAATTCGTGGCAACAAGGAAATTGCTAGCTAGATATTAAATAGAAGAGACAGATTGATATTATGCGCGATTGATAACTACCGAAATTTCGAAAAGTGAGCTGGGAAATTAACATGTGGAAACTCAGATGTTCTCGCTTTGTCATGGAGTTTCAGTAACAACAAAACTGTTACGTCGCATATAAAGATTCAGAAGCTTAGATTCATGGGGTTAAAAAACAATTCAAAATAGTCTCGAGTATCCCAGGATTTTCAATAAGCCCAGTCGAAACCAGTGCGTCCGTACCCTCTAGCTCATCAAGAACTGCAAAGATTCGTACCACTTTTCGAGGCTAAAACGATTGGTTTTTATTTCTAAAAATCCGCAATACTTATTTTGCGGGTCTCAACGCGCCAGAGGTGTACGGTCGAACTGGTTTTGACTGTGCAAATTGAACATCCTGGTAGTCTGAACGGCACTTTGGACTGCTGTCAGGGCCCCAGAAATTTTAGATTCGGGAACTTTGGACGCGGAATCAGCTCTCATTGAGGGAAATAGACCTGAAATCTTTTAACTATCGTTTTCCGTCTCTCATATCAAATTCATATTCGAGTAGCTTCTAATTTCTTATTGTCATGTTCGCAGGTTGATTTGTTGAAAACTCATGATTATGTTTAGAATACAATGAGAATTCGTTTATAGAAATTACCAAGTTCTTGAGATATAAGAAGGAGCGATTTTCAAAATTTTCAATTTTCATCCCAAATCACTTCGATTTCCAAAATTTCTGTGAAGTTTCAGTAAAATCACGTGAATTTCCAAAATCCCAGAACTCGAACCGTTCGAGTTCTGTGAAAAAT</canonical>
            <polymorphic>CCCTTAATCCATCTGATTCTATTCTCAGTTCAGCTTTTCTCTCAACGAGGCTCTTTTCCTGATTTAATCTCGAGATCTTCATCGTGTTGCTTCTCAGCTCTCACGTTTCCATTGACAACCACCGCGCCGGCAAACTTTTTTGGGAATCTTGAGCCGTAGATTGAATTCGTGGCAACAAGGAAATTGCTAGCTAGATATTAAATAGAAGAGACAGATTGATATTATGCGCGATTGATAACTACCGAAATTTCGAAAAGTGAGCTGGGAAATTAACATGTGGAAACTCAGATGTTCTCGCTTTGTCATGGAGTTTCAGTAACAACAAAACTGTTACGTCGCATATAAAGATTCAGAAGCTTAGATTCATGGGGTTAAAAAACAATTCAAAATAGTCTCGAGTATCCCAGGATTTTCAATAAGCCCAGTCGAAACCAGTGCGTCCGTACCCTCTAGCTCATCAAGAACTGCAAAGATTCGTACCACTTTTCGAGGCTAAAACRATTGGTTTTTATTTCTAAAAATCCGCAATACTTATTTTGCGGGTCTCAACGCGCCAGAGGTGTACGGTCGAACTGGTTTTGACTGTGCAAATTGAACATCCTGGTAGTCTGAACGGCACTTTGGACTGCTGTCAGGGCCCCAGAAATTTTAGATTCGGGAACTTTGGACGCGGAATCAGCTCTCATTGAGGGAAATAGACCTGAAATCTTTTAACTATCGTTTTCCGTCTCTCATATCAAATTCATATTCGAGTAGCTTCTAATTTCTTATTGTCATGTTCGCAGGTTGATTTGTTGAAAACTCATGATTATGTTTAGAATACAATGAGAATTCGTTTATAGAAATTACCAAGTTCTTGAGATATAAGAAGGAGCGATTTTCAAAATTTTCAATTTTCATCCCAAATCACTTCGATTTCCAAAATTTCTGTGAAGTTTCAGTAAAATCACGTGAATTTCCAAAATCCCAGAACTCGAACCGTTCGAGTTCTGTGAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACCCTCTAGCTCATCAAGAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTTCCCGAATCTAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>224</pcr_amplicon_size>
		<canonical_amplicon>GTACCCTCTAGCTCATCAAGAACTGCAAAGATTCGTACCACTTTTCGAGGCTAAAACGATTGGTTTTTATTTCTAAAAATCCGCAATACTTATTTTGCGGGTCTCAACGCGCCAGAGGTGTACGGTCGAACTGGTTTTGACTGTGCAAATTGAACATCCTGGTAGTCTGAACGGCACTTTGGACTGCTGTCAGGGCCCCAGAAATTTTAGATTCGGGAACTTTG</canonical_amplicon>
		<polymorphic_amplicon>GTACCCTCTAGCTCATCAAGAACTGCAAAGATTCGTACCACTTTTCGAGGCTAAAACRATTGGTTTTTATTTCTAAAAATCCGCAATACTTATTTTGCGGGTCTCAACGCGCCAGAGGTGTACGGTCGAACTGGTTTTGACTGTGCAAATTGAACATCCTGGTAGTCTGAACGGCACTTTGGACTGCTGTCAGGGCCCCAGAAATTTTAGATTCGGGAACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36754</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>490619</contig_pos>
        <strand>+</strand>
        <context>TTATTTTGCG[G/T]GTCTCAACGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCTAAAACGATTGGTTTTTATTTCTAAAAATCCGCAATACTTATTTTGCG</left_flank>
        <right_flank>GTCTCAACGCGCCAGAGGTGTACGGTCGAACTGGTTTTGACTGTGCAAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACGAGGCTCTTTTCCTGATTTAATCTCGAGATCTTCATCGTGTTGCTTCTCAGCTCTCACGTTTCCATTGACAACCACCGCGCCGGCAAACTTTTTTGGGAATCTTGAGCCGTAGATTGAATTCGTGGCAACAAGGAAATTGCTAGCTAGATATTAAATAGAAGAGACAGATTGATATTATGCGCGATTGATAACTACCGAAATTTCGAAAAGTGAGCTGGGAAATTAACATGTGGAAACTCAGATGTTCTCGCTTTGTCATGGAGTTTCAGTAACAACAAAACTGTTACGTCGCATATAAAGATTCAGAAGCTTAGATTCATGGGGTTAAAAAACAATTCAAAATAGTCTCGAGTATCCCAGGATTTTCAATAAGCCCAGTCGAAACCAGTGCGTCCGTACCCTCTAGCTCATCAAGAACTGCAAAGATTCGTACCACTTTTCGAGGCTAAAACGATTGGTTTTTATTTCTAAAAATCCGCAATACTTATTTTGCGGGTCTCAACGCGCCAGAGGTGTACGGTCGAACTGGTTTTGACTGTGCAAATTGAACATCCTGGTAGTCTGAACGGCACTTTGGACTGCTGTCAGGGCCCCAGAAATTTTAGATTCGGGAACTTTGGACGCGGAATCAGCTCTCATTGAGGGAAATAGACCTGAAATCTTTTAACTATCGTTTTCCGTCTCTCATATCAAATTCATATTCGAGTAGCTTCTAATTTCTTATTGTCATGTTCGCAGGTTGATTTGTTGAAAACTCATGATTATGTTTAGAATACAATGAGAATTCGTTTATAGAAATTACCAAGTTCTTGAGATATAAGAAGGAGCGATTTTCAAAATTTTCAATTTTCATCCCAAATCACTTCGATTTCCAAAATTTCTGTGAAGTTTCAGTAAAATCACGTGAATTTCCAAAATCCCAGAACTCGAACCGTTCGAGTTCTGTGAAAAATCCCAGAAATTGCCGTTCAATTTCTGTGAATCACGTAAAATTT</canonical>
            <polymorphic>CAACGAGGCTCTTTTCCTGATTTAATCTCGAGATCTTCATCGTGTTGCTTCTCAGCTCTCACGTTTCCATTGACAACCACCGCGCCGGCAAACTTTTTTGGGAATCTTGAGCCGTAGATTGAATTCGTGGCAACAAGGAAATTGCTAGCTAGATATTAAATAGAAGAGACAGATTGATATTATGCGCGATTGATAACTACCGAAATTTCGAAAAGTGAGCTGGGAAATTAACATGTGGAAACTCAGATGTTCTCGCTTTGTCATGGAGTTTCAGTAACAACAAAACTGTTACGTCGCATATAAAGATTCAGAAGCTTAGATTCATGGGGTTAAAAAACAATTCAAAATAGTCTCGAGTATCCCAGGATTTTCAATAAGCCCAGTCGAAACCAGTGCGTCCGTACCCTCTAGCTCATCAAGAACTGCAAAGATTCGTACCACTTTTCGAGGCTAAAACGATTGGTTTTTATTTCTAAAAATCCGCAATACTTATTTTGCGKGTCTCAACGCGCCAGAGGTGTACGGTCGAACTGGTTTTGACTGTGCAAATTGAACATCCTGGTAGTCTGAACGGCACTTTGGACTGCTGTCAGGGCCCCAGAAATTTTAGATTCGGGAACTTTGGACGCGGAATCAGCTCTCATTGAGGGAAATAGACCTGAAATCTTTTAACTATCGTTTTCCGTCTCTCATATCAAATTCATATTCGAGTAGCTTCTAATTTCTTATTGTCATGTTCGCAGGTTGATTTGTTGAAAACTCATGATTATGTTTAGAATACAATGAGAATTCGTTTATAGAAATTACCAAGTTCTTGAGATATAAGAAGGAGCGATTTTCAAAATTTTCAATTTTCATCCCAAATCACTTCGATTTCCAAAATTTCTGTGAAGTTTCAGTAAAATCACGTGAATTTCCAAAATCCCAGAACTCGAACCGTTCGAGTTCTGTGAAAAATCCCAGAAATTGCCGTTCAATTTCTGTGAATCACGTAAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACCACTTTTCGAGGCTAAA</pcr_primer_p1>
		<pcr_primer_p2>CGGAAAACGATAGTTAAAAGATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACCACTTTTCGAGGCTAAAACGATTGGTTTTTATTTCTAAAAATCCGCAATACTTATTTTGCGGGTCTCAACGCGCCAGAGGTGTACGGTCGAACTGGTTTTGACTGTGCAAATTGAACATCCTGGTAGTCTGAACGGCACTTTGGACTGCTGTCAGGGCCCCAGAAATTTTAGATTCGGGAACTTTGGACGCGGAATCAGCTCTCATTGAGGGAAATAGACCTGAAATCTTTTAACTATCGTTTTCCG</canonical_amplicon>
		<polymorphic_amplicon>TACCACTTTTCGAGGCTAAAACGATTGGTTTTTATTTCTAAAAATCCGCAATACTTATTTTGCGKGTCTCAACGCGCCAGAGGTGTACGGTCGAACTGGTTTTGACTGTGCAAATTGAACATCCTGGTAGTCTGAACGGCACTTTGGACTGCTGTCAGGGCCCCAGAAATTTTAGATTCGGGAACTTTGGACGCGGAATCAGCTCTCATTGAGGGAAATAGACCTGAAATCTTTTAACTATCGTTTTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36755</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>492406</contig_pos>
        <strand></strand>
        <context>GGATACACAA[G/T]CTacagtacc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGATTCATGCCTGCAAGTGAGTTGAATCGGTAGCTGAAAAGGATACACAA</left_flank>
        <right_flank>CTACAGTACCGGTCATTAAGATGTTCAAAAACGCTTTTTTTCAGTTGATT</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATGATTAAGTTCATGATTACAAGGTAAGAGTCAGAAATCTAGCCTCACATAAATGTTTCTCTTTCAGCAGCATCGAATCACAAAAGGAGTTCCACGAAATTCGACAAGCTCTTCAAAATCAATTCGATGAGAGCTACAACGCAGCGCATGCAATGATGAATACAATCAGTAGAGAATGGGAAGACTACAAACGTCTTCAAGTGTCAGAAGAAGAGAAAAATGTCATTGGCCAAAAGCTGACTCAAAAGCAGAATGCATTCAAATCGCTGTTCTTCAGAGCGCATGCATTCCGTTCAACTATCAGATCCATTTCTGCAGATATTTCTGATGAATTCCAGCCTTCAAAGGCAACAGTAGCTCCAGTTCTTCGTGAGCTCTCTTCTTTAGGCGTTACGCCGGAATACACTGTTATGACCGGACACGTCGGCCAATTTTTCTCATTGAGGCCGATTCATGCCTGCAAGTGAGTTGAATCGGTAGCTGAAAAGGATACACAAGCTACAGTACCGGTCATTAAGATGTTCAAAAACGCTTTTTTTCAGTTGATTTTGGTCATTTTAAGGAGTCTGGAGCTCGAATGTCAAGTCTCCGATAACTTTGACAGTTTTGGAGGGTCTAAAACAAACCTAGATTAAAAACTTTGCATTTACAGAGTTTTCCGAAAGATCCTAGTTTTTCTACGTTCTATCTGTTTTCAAAAGACACATGTTTTCAATACACTAACAGGCTTTAAAGGGGTGTCTTTAGAAACCTGAAAATACCTAAAAAAAAAGTAGGAGTTTCCAAAAACTTCTGCGAACGCTAAGTCCTTAATCTAGGTCTGTTTTATACTTTCCAAATTTCAAGTCTTCCGAAACTTGACAACCGAGCTCCAGACTCTTGAAAATTGTCAAAATGGCAGGAAATCCACTGAAAAATACGTTCTTATTAACCGGTACTGGGGATGTTAAAGTATAATTGGTTGCTATTCGATTGTTGATGATTCAAATTGCCTGATT</canonical>
            <polymorphic>AAATGATTAAGTTCATGATTACAAGGTAAGAGTCAGAAATCTAGCCTCACATAAATGTTTCTCTTTCAGCAGCATCGAATCACAAAAGGAGTTCCACGAAATTCGACAAGCTCTTCAAAATCAATTCGATGAGAGCTACAACGCAGCGCATGCAATGATGAATACAATCAGTAGAGAATGGGAAGACTACAAACGTCTTCAAGTGTCAGAAGAAGAGAAAAATGTCATTGGCCAAAAGCTGACTCAAAAGCAGAATGCATTCAAATCGCTGTTCTTCAGAGCGCATGCATTCCGTTCAACTATCAGATCCATTTCTGCAGATATTTCTGATGAATTCCAGCCTTCAAAGGCAACAGTAGCTCCAGTTCTTCGTGAGCTCTCTTCTTTAGGCGTTACGCCGGAATACACTGTTATGACCGGACACGTCGGCCAATTTTTCTCATTGAGGCCGATTCATGCCTGCAAGTGAGTTGAATCGGTAGCTGAAAAGGATACACAAKCTACAGTACCGGTCATTAAGATGTTCAAAAACGCTTTTTTTCAGTTGATTTTGGTCATTTTAAGGAGTCTGGAGCTCGAATGTCAAGTCTCCGATAACTTTGACAGTTTTGGAGGGTCTAAAACAAACCTAGATTAAAAACTTTGCATTTACAGAGTTTTCCGAAAGATCCTAGTTTTTCTACGTTCTATCTGTTTTCAAAAGACACATGTTTTCAATACACTAACAGGCTTTAAAGGGGTGTCTTTAGAAACCTGAAAATACCTAAAAAAAAAGTAGGAGTTTCCAAAAACTTCTGCGAACGCTAAGTCCTTAATCTAGGTCTGTTTTATACTTTCCAAATTTCAAGTCTTCCGAAACTTGACAACCGAGCTCCAGACTCTTGAAAATTGTCAAAATGGCAGGAAATCCACTGAAAAATACGTTCTTATTAACCGGTACTGGGGATGTTAAAGTATAATTGGTTGCTATTCGATTGTTGATGATTCAAATTGCCTGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>297 129 121 110 106 103 74 25 18 17</canonical_bands>
                <polymorphic_bands>297 129 121 110 106 103 92 25 17</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>155 142 129 102 96 74 66 53 44 34 25 19 19 18 17 7</canonical_bands>
                <polymorphic_bands>155 142 129 102 96 92 66 53 44 34 25 19 19 17 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCGGAATACACTGTTATGA</pcr_primer_p1>
		<pcr_primer_p2>CGAATAGCAACCAATTATACTTTA</pcr_primer_p2>
		<pcr_amplicon_size>577</pcr_amplicon_size>
		<canonical_amplicon>GCCGGAATACACTGTTATGACCGGACACGTCGGCCAATTTTTCTCATTGAGGCCGATTCATGCCTGCAAGTGAGTTGAATCGGTAGCTGAAAAGGATACACAAGCTACAGTACCGGTCATTAAGATGTTCAAAAACGCTTTTTTTCAGTTGATTTTGGTCATTTTAAGGAGTCTGGAGCTCGAATGTCAAGTCTCCGATAACTTTGACAGTTTTGGAGGGTCTAAAACAAACCTAGATTAAAAACTTTGCATTTACAGAGTTTTCCGAAAGATCCTAGTTTTTCTACGTTCTATCTGTTTTCAAAAGACACATGTTTTCAATACACTAACAGGCTTTAAAGGGGTGTCTTTAGAAACCTGAAAATACCTAAAAAAAAAGTAGGAGTTTCCAAAAACTTCTGCGAACGCTAAGTCCTTAATCTAGGTCTGTTTTATACTTTCCAAATTTCAAGTCTTCCGAAACTTGACAACCGAGCTCCAGACTCTTGAAAATTGTCAAAATGGCAGGAAATCCACTGAAAAATACGTTCTTATTAACCGGTACTGGGGATGTTAAAGTATAATTGGTTGCTATTCG</canonical_amplicon>
		<polymorphic_amplicon>GCCGGAATACACTGTTATGACCGGACACGTCGGCCAATTTTTCTCATTGAGGCCGATTCATGCCTGCAAGTGAGTTGAATCGGTAGCTGAAAAGGATACACAAKCTACAGTACCGGTCATTAAGATGTTCAAAAACGCTTTTTTTCAGTTGATTTTGGTCATTTTAAGGAGTCTGGAGCTCGAATGTCAAGTCTCCGATAACTTTGACAGTTTTGGAGGGTCTAAAACAAACCTAGATTAAAAACTTTGCATTTACAGAGTTTTCCGAAAGATCCTAGTTTTTCTACGTTCTATCTGTTTTCAAAAGACACATGTTTTCAATACACTAACAGGCTTTAAAGGGGTGTCTTTAGAAACCTGAAAATACCTAAAAAAAAAGTAGGAGTTTCCAAAAACTTCTGCGAACGCTAAGTCCTTAATCTAGGTCTGTTTTATACTTTCCAAATTTCAAGTCTTCCGAAACTTGACAACCGAGCTCCAGACTCTTGAAAATTGTCAAAATGGCAGGAAATCCACTGAAAAATACGTTCTTATTAACCGGTACTGGGGATGTTAAAGTATAATTGGTTGCTATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36756</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>492604</contig_pos>
        <strand></strand>
        <context>tatctgtttt[C/T]raaagacaca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTACAGAGTTTTCCGAAAGATCCTAGTTTTTCTACGTTCTATCTGTTTT</left_flank>
        <right_flank>AAAAGACACATGTTTTCAATACACTAACAGGCTTTAAAGGGGTGTCTTTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAGTGTCAGAAGAAGAGAAAAATGTCATTGGCCAAAAGCTGACTCAAAAGCAGAATGCATTCAAATCGCTGTTCTTCAGAGCGCATGCATTCCGTTCAACTATCAGATCCATTTCTGCAGATATTTCTGATGAATTCCAGCCTTCAAAGGCAACAGTAGCTCCAGTTCTTCGTGAGCTCTCTTCTTTAGGCGTTACGCCGGAATACACTGTTATGACCGGACACGTCGGCCAATTTTTCTCATTGAGGCCGATTCATGCCTGCAAGTGAGTTGAATCGGTAGCTGAAAAGGATACACAAGCTACAGTACCGGTCATTAAGATGTTCAAAAACGCTTTTTTTCAGTTGATTTTGGTCATTTTAAGGAGTCTGGAGCTCGAATGTCAAGTCTCCGATAACTTTGACAGTTTTGGAGGGTCTAAAACAAACCTAGATTAAAAACTTTGCATTTACAGAGTTTTCCGAAAGATCCTAGTTTTTCTACGTTCTATCTGTTTTCAAAAGACACATGTTTTCAATACACTAACAGGCTTTAAAGGGGTGTCTTTAGAAACCTGAAAATACCTAAAAAAAAAGTAGGAGTTTCCAAAAACTTCTGCGAACGCTAAGTCCTTAATCTAGGTCTGTTTTATACTTTCCAAATTTCAAGTCTTCCGAAACTTGACAACCGAGCTCCAGACTCTTGAAAATTGTCAAAATGGCAGGAAATCCACTGAAAAATACGTTCTTATTAACCGGTACTGGGGATGTTAAAGTATAATTGGTTGCTATTCGATTGTTGATGATTCAAATTGCCTGATTCAAGCAACTGAACATGAAAACAAAAAATACTGAATGTTGACAACTCAAAATTGCGGTACAATAGTAGAAATAGCCGAGAAGCCGAAAGTTTCAAGTTAGCACTTTAAAAAATTATACCATTCACAGAATTGTATTTCAATGAGGTAAAATTTGCTCAAAAGTTGGTAAAAGTGGCAATGATTATGCTCGGAACGTTAT</canonical>
            <polymorphic>TCAAGTGTCAGAAGAAGAGAAAAATGTCATTGGCCAAAAGCTGACTCAAAAGCAGAATGCATTCAAATCGCTGTTCTTCAGAGCGCATGCATTCCGTTCAACTATCAGATCCATTTCTGCAGATATTTCTGATGAATTCCAGCCTTCAAAGGCAACAGTAGCTCCAGTTCTTCGTGAGCTCTCTTCTTTAGGCGTTACGCCGGAATACACTGTTATGACCGGACACGTCGGCCAATTTTTCTCATTGAGGCCGATTCATGCCTGCAAGTGAGTTGAATCGGTAGCTGAAAAGGATACACAAGCTACAGTACCGGTCATTAAGATGTTCAAAAACGCTTTTTTTCAGTTGATTTTGGTCATTTTAAGGAGTCTGGAGCTCGAATGTCAAGTCTCCGATAACTTTGACAGTTTTGGAGGGTCTAAAACAAACCTAGATTAAAAACTTTGCATTTACAGAGTTTTCCGAAAGATCCTAGTTTTTCTACGTTCTATCTGTTTTYAAAAGACACATGTTTTCAATACACTAACAGGCTTTAAAGGGGTGTCTTTAGAAACCTGAAAATACCTAAAAAAAAAGTAGGAGTTTCCAAAAACTTCTGCGAACGCTAAGTCCTTAATCTAGGTCTGTTTTATACTTTCCAAATTTCAAGTCTTCCGAAACTTGACAACCGAGCTCCAGACTCTTGAAAATTGTCAAAATGGCAGGAAATCCACTGAAAAATACGTTCTTATTAACCGGTACTGGGGATGTTAAAGTATAATTGGTTGCTATTCGATTGTTGATGATTCAAATTGCCTGATTCAAGCAACTGAACATGAAAACAAAAAATACTGAATGTTGACAACTCAAAATTGCGGTACAATAGTAGAAATAGCCGAGAAGCCGAAAGTTTCAAGTTAGCACTTTAAAAAATTATACCATTCACAGAATTGTATTTCAATGAGGTAAAATTTGCTCAAAAGTTGGTAAAAGTGGCAATGATTATGCTCGGAACGTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTAGCTGAAAAGGATACACAA</pcr_primer_p1>
		<pcr_primer_p2>CGAATAGCAACCAATTATACTTTA</pcr_primer_p2>
		<pcr_amplicon_size>496</pcr_amplicon_size>
		<canonical_amplicon>GGTAGCTGAAAAGGATACACAAGCTACAGTACCGGTCATTAAGATGTTCAAAAACGCTTTTTTTCAGTTGATTTTGGTCATTTTAAGGAGTCTGGAGCTCGAATGTCAAGTCTCCGATAACTTTGACAGTTTTGGAGGGTCTAAAACAAACCTAGATTAAAAACTTTGCATTTACAGAGTTTTCCGAAAGATCCTAGTTTTTCTACGTTCTATCTGTTTTCAAAAGACACATGTTTTCAATACACTAACAGGCTTTAAAGGGGTGTCTTTAGAAACCTGAAAATACCTAAAAAAAAAGTAGGAGTTTCCAAAAACTTCTGCGAACGCTAAGTCCTTAATCTAGGTCTGTTTTATACTTTCCAAATTTCAAGTCTTCCGAAACTTGACAACCGAGCTCCAGACTCTTGAAAATTGTCAAAATGGCAGGAAATCCACTGAAAAATACGTTCTTATTAACCGGTACTGGGGATGTTAAAGTATAATTGGTTGCTATTCG</canonical_amplicon>
		<polymorphic_amplicon>GGTAGCTGAAAAGGATACACAAGCTACAGTACCGGTCATTAAGATGTTCAAAAACGCTTTTTTTCAGTTGATTTTGGTCATTTTAAGGAGTCTGGAGCTCGAATGTCAAGTCTCCGATAACTTTGACAGTTTTGGAGGGTCTAAAACAAACCTAGATTAAAAACTTTGCATTTACAGAGTTTTCCGAAAGATCCTAGTTTTTCTACGTTCTATCTGTTTTYAAAAGACACATGTTTTCAATACACTAACAGGCTTTAAAGGGGTGTCTTTAGAAACCTGAAAATACCTAAAAAAAAAGTAGGAGTTTCCAAAAACTTCTGCGAACGCTAAGTCCTTAATCTAGGTCTGTTTTATACTTTCCAAATTTCAAGTCTTCCGAAACTTGACAACCGAGCTCCAGACTCTTGAAAATTGTCAAAATGGCAGGAAATCCACTGAAAAATACGTTCTTATTAACCGGTACTGGGGATGTTAAAGTATAATTGGTTGCTATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36757</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>492605</contig_pos>
        <strand></strand>
        <context>atctgtttty[A/G]aaagacacat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTACAGAGTTTTCCGAAAGATCCTAGTTTTTCTACGTTCTATCTGTTTTC</left_flank>
        <right_flank>AAAGACACATGTTTTCAATACACTAACAGGCTTTAAAGGGGTGTCTTTAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGTGTCAGAAGAAGAGAAAAATGTCATTGGCCAAAAGCTGACTCAAAAGCAGAATGCATTCAAATCGCTGTTCTTCAGAGCGCATGCATTCCGTTCAACTATCAGATCCATTTCTGCAGATATTTCTGATGAATTCCAGCCTTCAAAGGCAACAGTAGCTCCAGTTCTTCGTGAGCTCTCTTCTTTAGGCGTTACGCCGGAATACACTGTTATGACCGGACACGTCGGCCAATTTTTCTCATTGAGGCCGATTCATGCCTGCAAGTGAGTTGAATCGGTAGCTGAAAAGGATACACAAGCTACAGTACCGGTCATTAAGATGTTCAAAAACGCTTTTTTTCAGTTGATTTTGGTCATTTTAAGGAGTCTGGAGCTCGAATGTCAAGTCTCCGATAACTTTGACAGTTTTGGAGGGTCTAAAACAAACCTAGATTAAAAACTTTGCATTTACAGAGTTTTCCGAAAGATCCTAGTTTTTCTACGTTCTATCTGTTTTCAAAAGACACATGTTTTCAATACACTAACAGGCTTTAAAGGGGTGTCTTTAGAAACCTGAAAATACCTAAAAAAAAAGTAGGAGTTTCCAAAAACTTCTGCGAACGCTAAGTCCTTAATCTAGGTCTGTTTTATACTTTCCAAATTTCAAGTCTTCCGAAACTTGACAACCGAGCTCCAGACTCTTGAAAATTGTCAAAATGGCAGGAAATCCACTGAAAAATACGTTCTTATTAACCGGTACTGGGGATGTTAAAGTATAATTGGTTGCTATTCGATTGTTGATGATTCAAATTGCCTGATTCAAGCAACTGAACATGAAAACAAAAAATACTGAATGTTGACAACTCAAAATTGCGGTACAATAGTAGAAATAGCCGAGAAGCCGAAAGTTTCAAGTTAGCACTTTAAAAAATTATACCATTCACAGAATTGTATTTCAATGAGGTAAAATTTGCTCAAAAGTTGGTAAAAGTGGCAATGATTATGCTCGGAACGTTATC</canonical>
            <polymorphic>CAAGTGTCAGAAGAAGAGAAAAATGTCATTGGCCAAAAGCTGACTCAAAAGCAGAATGCATTCAAATCGCTGTTCTTCAGAGCGCATGCATTCCGTTCAACTATCAGATCCATTTCTGCAGATATTTCTGATGAATTCCAGCCTTCAAAGGCAACAGTAGCTCCAGTTCTTCGTGAGCTCTCTTCTTTAGGCGTTACGCCGGAATACACTGTTATGACCGGACACGTCGGCCAATTTTTCTCATTGAGGCCGATTCATGCCTGCAAGTGAGTTGAATCGGTAGCTGAAAAGGATACACAAGCTACAGTACCGGTCATTAAGATGTTCAAAAACGCTTTTTTTCAGTTGATTTTGGTCATTTTAAGGAGTCTGGAGCTCGAATGTCAAGTCTCCGATAACTTTGACAGTTTTGGAGGGTCTAAAACAAACCTAGATTAAAAACTTTGCATTTACAGAGTTTTCCGAAAGATCCTAGTTTTTCTACGTTCTATCTGTTTTCRAAAGACACATGTTTTCAATACACTAACAGGCTTTAAAGGGGTGTCTTTAGAAACCTGAAAATACCTAAAAAAAAAGTAGGAGTTTCCAAAAACTTCTGCGAACGCTAAGTCCTTAATCTAGGTCTGTTTTATACTTTCCAAATTTCAAGTCTTCCGAAACTTGACAACCGAGCTCCAGACTCTTGAAAATTGTCAAAATGGCAGGAAATCCACTGAAAAATACGTTCTTATTAACCGGTACTGGGGATGTTAAAGTATAATTGGTTGCTATTCGATTGTTGATGATTCAAATTGCCTGATTCAAGCAACTGAACATGAAAACAAAAAATACTGAATGTTGACAACTCAAAATTGCGGTACAATAGTAGAAATAGCCGAGAAGCCGAAAGTTTCAAGTTAGCACTTTAAAAAATTATACCATTCACAGAATTGTATTTCAATGAGGTAAAATTTGCTCAAAAGTTGGTAAAAGTGGCAATGATTATGCTCGGAACGTTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTAGCTGAAAAGGATACACAA</pcr_primer_p1>
		<pcr_primer_p2>CGAATAGCAACCAATTATACTTTA</pcr_primer_p2>
		<pcr_amplicon_size>496</pcr_amplicon_size>
		<canonical_amplicon>GGTAGCTGAAAAGGATACACAAGCTACAGTACCGGTCATTAAGATGTTCAAAAACGCTTTTTTTCAGTTGATTTTGGTCATTTTAAGGAGTCTGGAGCTCGAATGTCAAGTCTCCGATAACTTTGACAGTTTTGGAGGGTCTAAAACAAACCTAGATTAAAAACTTTGCATTTACAGAGTTTTCCGAAAGATCCTAGTTTTTCTACGTTCTATCTGTTTTCAAAAGACACATGTTTTCAATACACTAACAGGCTTTAAAGGGGTGTCTTTAGAAACCTGAAAATACCTAAAAAAAAAGTAGGAGTTTCCAAAAACTTCTGCGAACGCTAAGTCCTTAATCTAGGTCTGTTTTATACTTTCCAAATTTCAAGTCTTCCGAAACTTGACAACCGAGCTCCAGACTCTTGAAAATTGTCAAAATGGCAGGAAATCCACTGAAAAATACGTTCTTATTAACCGGTACTGGGGATGTTAAAGTATAATTGGTTGCTATTCG</canonical_amplicon>
		<polymorphic_amplicon>GGTAGCTGAAAAGGATACACAAGCTACAGTACCGGTCATTAAGATGTTCAAAAACGCTTTTTTTCAGTTGATTTTGGTCATTTTAAGGAGTCTGGAGCTCGAATGTCAAGTCTCCGATAACTTTGACAGTTTTGGAGGGTCTAAAACAAACCTAGATTAAAAACTTTGCATTTACAGAGTTTTCCGAAAGATCCTAGTTTTTCTACGTTCTATCTGTTTTCRAAAGACACATGTTTTCAATACACTAACAGGCTTTAAAGGGGTGTCTTTAGAAACCTGAAAATACCTAAAAAAAAAGTAGGAGTTTCCAAAAACTTCTGCGAACGCTAAGTCCTTAATCTAGGTCTGTTTTATACTTTCCAAATTTCAAGTCTTCCGAAACTTGACAACCGAGCTCCAGACTCTTGAAAATTGTCAAAATGGCAGGAAATCCACTGAAAAATACGTTCTTATTAACCGGTACTGGGGATGTTAAAGTATAATTGGTTGCTATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36758</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>492816</contig_pos>
        <strand></strand>
        <context>gcaggaaatc[C/A]actgaaaaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTGACAACCGAGCTCCAGACTCTTGAAAATTGTCAAAATGGCAGGAAATC</left_flank>
        <right_flank>ACTGAAAAATACGTTCTTATTAACCGGTACTGGGGATGTTAAAGTATAAT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATGACCGGACACGTCGGCCAATTTTTCTCATTGAGGCCGATTCATGCCTGCAAGTGAGTTGAATCGGTAGCTGAAAAGGATACACAAGCTACAGTACCGGTCATTAAGATGTTCAAAAACGCTTTTTTTCAGTTGATTTTGGTCATTTTAAGGAGTCTGGAGCTCGAATGTCAAGTCTCCGATAACTTTGACAGTTTTGGAGGGTCTAAAACAAACCTAGATTAAAAACTTTGCATTTACAGAGTTTTCCGAAAGATCCTAGTTTTTCTACGTTCTATCTGTTTTCAAAAGACACATGTTTTCAATACACTAACAGGCTTTAAAGGGGTGTCTTTAGAAACCTGAAAATACCTAAAAAAAAAGTAGGAGTTTCCAAAAACTTCTGCGAACGCTAAGTCCTTAATCTAGGTCTGTTTTATACTTTCCAAATTTCAAGTCTTCCGAAACTTGACAACCGAGCTCCAGACTCTTGAAAATTGTCAAAATGGCAGGAAATCCACTGAAAAATACGTTCTTATTAACCGGTACTGGGGATGTTAAAGTATAATTGGTTGCTATTCGATTGTTGATGATTCAAATTGCCTGATTCAAGCAACTGAACATGAAAACAAAAAATACTGAATGTTGACAACTCAAAATTGCGGTACAATAGTAGAAATAGCCGAGAAGCCGAAAGTTTCAAGTTAGCACTTTAAAAAATTATACCATTCACAGAATTGTATTTCAATGAGGTAAAATTTGCTCAAAAGTTGGTAAAAGTGGCAATGATTATGCTCGGAACGTTATCTTTAACATTCATCGTCGTTTTTCCCCCAATTTTCAAAAAAAAAATATTTAGTTTTGAGTGGTGCTATAACTCACCCAACCAATTTGATTTCTTTTCAGAGACGCATCAATTCCTGAAACTGCCCAAAGCCGTCTTGTAGAAGATATCACCGTCCTCTCAACCGATCAACTCAACTACACCACAAAACTACTTGTTCTTGCCAGACGTGCAT</canonical>
            <polymorphic>TTATGACCGGACACGTCGGCCAATTTTTCTCATTGAGGCCGATTCATGCCTGCAAGTGAGTTGAATCGGTAGCTGAAAAGGATACACAAGCTACAGTACCGGTCATTAAGATGTTCAAAAACGCTTTTTTTCAGTTGATTTTGGTCATTTTAAGGAGTCTGGAGCTCGAATGTCAAGTCTCCGATAACTTTGACAGTTTTGGAGGGTCTAAAACAAACCTAGATTAAAAACTTTGCATTTACAGAGTTTTCCGAAAGATCCTAGTTTTTCTACGTTCTATCTGTTTTCAAAAGACACATGTTTTCAATACACTAACAGGCTTTAAAGGGGTGTCTTTAGAAACCTGAAAATACCTAAAAAAAAAGTAGGAGTTTCCAAAAACTTCTGCGAACGCTAAGTCCTTAATCTAGGTCTGTTTTATACTTTCCAAATTTCAAGTCTTCCGAAACTTGACAACCGAGCTCCAGACTCTTGAAAATTGTCAAAATGGCAGGAAATCMACTGAAAAATACGTTCTTATTAACCGGTACTGGGGATGTTAAAGTATAATTGGTTGCTATTCGATTGTTGATGATTCAAATTGCCTGATTCAAGCAACTGAACATGAAAACAAAAAATACTGAATGTTGACAACTCAAAATTGCGGTACAATAGTAGAAATAGCCGAGAAGCCGAAAGTTTCAAGTTAGCACTTTAAAAAATTATACCATTCACAGAATTGTATTTCAATGAGGTAAAATTTGCTCAAAAGTTGGTAAAAGTGGCAATGATTATGCTCGGAACGTTATCTTTAACATTCATCGTCGTTTTTCCCCCAATTTTCAAAAAAAAAATATTTAGTTTTGAGTGGTGCTATAACTCACCCAACCAATTTGATTTCTTTTCAGAGACGCATCAATTCCTGAAACTGCCCAAAGCCGTCTTGTAGAAGATATCACCGTCCTCTCAACCGATCAACTCAACTACACCACAAAACTACTTGTTCTTGCCAGACGTGCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>210 190 169 86 75 50 45 30 28 27 22 21 15 13 10 3 3 3</canonical_bands>
                <polymorphic_bands>359 210 86 75 50 45 30 28 27 22 21 15 13 10 3 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTAGCTGAAAAGGATACACAA</pcr_primer_p1>
		<pcr_primer_p2>CGAATAGCAACCAATTATACTTTA</pcr_primer_p2>
		<pcr_amplicon_size>496</pcr_amplicon_size>
		<canonical_amplicon>GGTAGCTGAAAAGGATACACAAGCTACAGTACCGGTCATTAAGATGTTCAAAAACGCTTTTTTTCAGTTGATTTTGGTCATTTTAAGGAGTCTGGAGCTCGAATGTCAAGTCTCCGATAACTTTGACAGTTTTGGAGGGTCTAAAACAAACCTAGATTAAAAACTTTGCATTTACAGAGTTTTCCGAAAGATCCTAGTTTTTCTACGTTCTATCTGTTTTCAAAAGACACATGTTTTCAATACACTAACAGGCTTTAAAGGGGTGTCTTTAGAAACCTGAAAATACCTAAAAAAAAAGTAGGAGTTTCCAAAAACTTCTGCGAACGCTAAGTCCTTAATCTAGGTCTGTTTTATACTTTCCAAATTTCAAGTCTTCCGAAACTTGACAACCGAGCTCCAGACTCTTGAAAATTGTCAAAATGGCAGGAAATCCACTGAAAAATACGTTCTTATTAACCGGTACTGGGGATGTTAAAGTATAATTGGTTGCTATTCG</canonical_amplicon>
		<polymorphic_amplicon>GGTAGCTGAAAAGGATACACAAGCTACAGTACCGGTCATTAAGATGTTCAAAAACGCTTTTTTTCAGTTGATTTTGGTCATTTTAAGGAGTCTGGAGCTCGAATGTCAAGTCTCCGATAACTTTGACAGTTTTGGAGGGTCTAAAACAAACCTAGATTAAAAACTTTGCATTTACAGAGTTTTCCGAAAGATCCTAGTTTTTCTACGTTCTATCTGTTTTCAAAAGACACATGTTTTCAATACACTAACAGGCTTTAAAGGGGTGTCTTTAGAAACCTGAAAATACCTAAAAAAAAAGTAGGAGTTTCCAAAAACTTCTGCGAACGCTAAGTCCTTAATCTAGGTCTGTTTTATACTTTCCAAATTTCAAGTCTTCCGAAACTTGACAACCGAGCTCCAGACTCTTGAAAATTGTCAAAATGGCAGGAAATCMACTGAAAAATACGTTCTTATTAACCGGTACTGGGGATGTTAAAGTATAATTGGTTGCTATTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36759</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>492838</contig_pos>
        <strand></strand>
        <context>cgttcttatt[A/G]accggtactG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAAAATTGTCAAAATGGCAGGAAATCCACTGAAAAATACGTTCTTATT</left_flank>
        <right_flank>ACCGGTACTGGGGATGTTAAAGTATAATTGGTTGCTATTCGATTGTTGAT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTCTCATTGAGGCCGATTCATGCCTGCAAGTGAGTTGAATCGGTAGCTGAAAAGGATACACAAGCTACAGTACCGGTCATTAAGATGTTCAAAAACGCTTTTTTTCAGTTGATTTTGGTCATTTTAAGGAGTCTGGAGCTCGAATGTCAAGTCTCCGATAACTTTGACAGTTTTGGAGGGTCTAAAACAAACCTAGATTAAAAACTTTGCATTTACAGAGTTTTCCGAAAGATCCTAGTTTTTCTACGTTCTATCTGTTTTCAAAAGACACATGTTTTCAATACACTAACAGGCTTTAAAGGGGTGTCTTTAGAAACCTGAAAATACCTAAAAAAAAAGTAGGAGTTTCCAAAAACTTCTGCGAACGCTAAGTCCTTAATCTAGGTCTGTTTTATACTTTCCAAATTTCAAGTCTTCCGAAACTTGACAACCGAGCTCCAGACTCTTGAAAATTGTCAAAATGGCAGGAAATCCACTGAAAAATACGTTCTTATTAACCGGTACTGGGGATGTTAAAGTATAATTGGTTGCTATTCGATTGTTGATGATTCAAATTGCCTGATTCAAGCAACTGAACATGAAAACAAAAAATACTGAATGTTGACAACTCAAAATTGCGGTACAATAGTAGAAATAGCCGAGAAGCCGAAAGTTTCAAGTTAGCACTTTAAAAAATTATACCATTCACAGAATTGTATTTCAATGAGGTAAAATTTGCTCAAAAGTTGGTAAAAGTGGCAATGATTATGCTCGGAACGTTATCTTTAACATTCATCGTCGTTTTTCCCCCAATTTTCAAAAAAAAAATATTTAGTTTTGAGTGGTGCTATAACTCACCCAACCAATTTGATTTCTTTTCAGAGACGCATCAATTCCTGAAACTGCCCAAAGCCGTCTTGTAGAAGATATCACCGTCCTCTCAACCGATCAACTCAACTACACCACAAAACTACTTGTTCTTGCCAGACGTGCATGCGACTGCGAGTTCCAGAAACG</canonical>
            <polymorphic>ATTTTTCTCATTGAGGCCGATTCATGCCTGCAAGTGAGTTGAATCGGTAGCTGAAAAGGATACACAAGCTACAGTACCGGTCATTAAGATGTTCAAAAACGCTTTTTTTCAGTTGATTTTGGTCATTTTAAGGAGTCTGGAGCTCGAATGTCAAGTCTCCGATAACTTTGACAGTTTTGGAGGGTCTAAAACAAACCTAGATTAAAAACTTTGCATTTACAGAGTTTTCCGAAAGATCCTAGTTTTTCTACGTTCTATCTGTTTTCAAAAGACACATGTTTTCAATACACTAACAGGCTTTAAAGGGGTGTCTTTAGAAACCTGAAAATACCTAAAAAAAAAGTAGGAGTTTCCAAAAACTTCTGCGAACGCTAAGTCCTTAATCTAGGTCTGTTTTATACTTTCCAAATTTCAAGTCTTCCGAAACTTGACAACCGAGCTCCAGACTCTTGAAAATTGTCAAAATGGCAGGAAATCCACTGAAAAATACGTTCTTATTRACCGGTACTGGGGATGTTAAAGTATAATTGGTTGCTATTCGATTGTTGATGATTCAAATTGCCTGATTCAAGCAACTGAACATGAAAACAAAAAATACTGAATGTTGACAACTCAAAATTGCGGTACAATAGTAGAAATAGCCGAGAAGCCGAAAGTTTCAAGTTAGCACTTTAAAAAATTATACCATTCACAGAATTGTATTTCAATGAGGTAAAATTTGCTCAAAAGTTGGTAAAAGTGGCAATGATTATGCTCGGAACGTTATCTTTAACATTCATCGTCGTTTTTCCCCCAATTTTCAAAAAAAAAATATTTAGTTTTGAGTGGTGCTATAACTCACCCAACCAATTTGATTTCTTTTCAGAGACGCATCAATTCCTGAAACTGCCCAAAGCCGTCTTGTAGAAGATATCACCGTCCTCTCAACCGATCAACTCAACTACACCACAAAACTACTTGTTCTTGCCAGACGTGCATGCGACTGCGAGTTCCAGAAACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>231 155 118 98 97 84 80 74 44 19</canonical_bands>
                <polymorphic_bands>231 155 137 98 97 84 80 74 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTAGCTGAAAAGGATACACAA</pcr_primer_p1>
		<pcr_primer_p2>ATCATCAACAATCGAATAGCA</pcr_primer_p2>
		<pcr_amplicon_size>508</pcr_amplicon_size>
		<canonical_amplicon>GGTAGCTGAAAAGGATACACAAGCTACAGTACCGGTCATTAAGATGTTCAAAAACGCTTTTTTTCAGTTGATTTTGGTCATTTTAAGGAGTCTGGAGCTCGAATGTCAAGTCTCCGATAACTTTGACAGTTTTGGAGGGTCTAAAACAAACCTAGATTAAAAACTTTGCATTTACAGAGTTTTCCGAAAGATCCTAGTTTTTCTACGTTCTATCTGTTTTCAAAAGACACATGTTTTCAATACACTAACAGGCTTTAAAGGGGTGTCTTTAGAAACCTGAAAATACCTAAAAAAAAAGTAGGAGTTTCCAAAAACTTCTGCGAACGCTAAGTCCTTAATCTAGGTCTGTTTTATACTTTCCAAATTTCAAGTCTTCCGAAACTTGACAACCGAGCTCCAGACTCTTGAAAATTGTCAAAATGGCAGGAAATCCACTGAAAAATACGTTCTTATTAACCGGTACTGGGGATGTTAAAGTATAATTGGTTGCTATTCGATTGTTGATGAT</canonical_amplicon>
		<polymorphic_amplicon>GGTAGCTGAAAAGGATACACAAGCTACAGTACCGGTCATTAAGATGTTCAAAAACGCTTTTTTTCAGTTGATTTTGGTCATTTTAAGGAGTCTGGAGCTCGAATGTCAAGTCTCCGATAACTTTGACAGTTTTGGAGGGTCTAAAACAAACCTAGATTAAAAACTTTGCATTTACAGAGTTTTCCGAAAGATCCTAGTTTTTCTACGTTCTATCTGTTTTCAAAAGACACATGTTTTCAATACACTAACAGGCTTTAAAGGGGTGTCTTTAGAAACCTGAAAATACCTAAAAAAAAAGTAGGAGTTTCCAAAAACTTCTGCGAACGCTAAGTCCTTAATCTAGGTCTGTTTTATACTTTCCAAATTTCAAGTCTTCCGAAACTTGACAACCGAGCTCCAGACTCTTGAAAATTGTCAAAATGGCAGGAAATCCACTGAAAAATACGTTCTTATTRACCGGTACTGGGGATGTTAAAGTATAATTGGTTGCTATTCGATTGTTGATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36760</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>497763</contig_pos>
        <strand></strand>
        <context>CCTCGAAATC[C/A]TTATCGTGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTTGTGAATTTTAAAGGTCGGGAGACATAAAAAACAAATCCTCGAAATC</left_flank>
        <right_flank>TTATCGTGTAGGCCTCTTGAGTAGTTGAATTTGCCTCTTGAGTAGTTGGC</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTCAACGTGAAATATATGGTAGCACAATTTAAAGAATGCATATTTTACTTCCAATGTAGCAAAAACCATTCCCACGCATGTGAAAATGATTACCATATCCTTTTAGCTTCCGAAAACTTTTTCAATGCAAAATACGTTCAGAAATGTTAAAATGAAGCCAGCAATGATGGAAGAGAGAAATCCAAAAATCGCAATTGCGTGGGAGAGAGAAACCCAAGAGAGGTAACTATCGGTAATTTTGAGAAGCGTCACTGGCTAAAAAACCAAAACATGAAAATTGTCTTCTTTATCTTGAATTATCTTCAAAAACAGGAAATTAATTACTGAGCATACTACGGAAAAACAAATGAAAGTGGAACACATCCGCTCAGATTCTTTATGTTCGTCACAAAAGTTGTTCTTTCAGAGCTTTCCACGAAATTCATCCAAATTATCATAGTACTGTAATTTTGTGAATTTTAAAGGTCGGGAGACATAAAAAACAAATCCTCGAAATCCTTATCGTGTAGGCCTCTTGAGTAGTTGAATTTGCCTCTTGAGTAGTTGGCCCGTTGTTGGAGATGCCGCGCCAATTCCGGCTGAGCCACGGTGGCTCGATTTGTGTCGCTTGCCGAATTTACACATGCAAATGGCACGATAGCCATGACTTCACTGAACACGGCTCGTTGCAGTTGCGATGTTCCTAATAAGCAAACTTTTGAGTTGACGGGCTGATTGGTTGAACCAGCTATGATGGATGAAAGAGCATCTGAATGAACGATGAAAAACGTTTCATGAGTTAATTTTCAGGCTTCATTGATTATAAGTAACTTCAAAAATAGTTTCAAAACGTTCCTGTCGTCTGGTTTCCGTGTTGTTCAACGCGGTTAGCTTTGCATAAGCACACGGATTTCCGCAAGGTGTTCAGTATTTCTGTAAAATATTCCGATCATTGTTATTTTGACTTTAAAACAACGACTTTTAAGCGTGTTCCTGTATTCAGCTACAATGTACATGAC</canonical>
            <polymorphic>GACTCAACGTGAAATATATGGTAGCACAATTTAAAGAATGCATATTTTACTTCCAATGTAGCAAAAACCATTCCCACGCATGTGAAAATGATTACCATATCCTTTTAGCTTCCGAAAACTTTTTCAATGCAAAATACGTTCAGAAATGTTAAAATGAAGCCAGCAATGATGGAAGAGAGAAATCCAAAAATCGCAATTGCGTGGGAGAGAGAAACCCAAGAGAGGTAACTATCGGTAATTTTGAGAAGCGTCACTGGCTAAAAAACCAAAACATGAAAATTGTCTTCTTTATCTTGAATTATCTTCAAAAACAGGAAATTAATTACTGAGCATACTACGGAAAAACAAATGAAAGTGGAACACATCCGCTCAGATTCTTTATGTTCGTCACAAAAGTTGTTCTTTCAGAGCTTTCCACGAAATTCATCCAAATTATCATAGTACTGTAATTTTGTGAATTTTAAAGGTCGGGAGACATAAAAAACAAATCCTCGAAATCMTTATCGTGTAGGCCTCTTGAGTAGTTGAATTTGCCTCTTGAGTAGTTGGCCCGTTGTTGGAGATGCCGCGCCAATTCCGGCTGAGCCACGGTGGCTCGATTTGTGTCGCTTGCCGAATTTACACATGCAAATGGCACGATAGCCATGACTTCACTGAACACGGCTCGTTGCAGTTGCGATGTTCCTAATAAGCAAACTTTTGAGTTGACGGGCTGATTGGTTGAACCAGCTATGATGGATGAAAGAGCATCTGAATGAACGATGAAAAACGTTTCATGAGTTAATTTTCAGGCTTCATTGATTATAAGTAACTTCAAAAATAGTTTCAAAACGTTCCTGTCGTCTGGTTTCCGTGTTGTTCAACGCGGTTAGCTTTGCATAAGCACACGGATTTCCGCAAGGTGTTCAGTATTTCTGTAAAATATTCCGATCATTGTTATTTTGACTTTAAAACAACGACTTTTAAGCGTGTTCCTGTATTCAGCTACAATGTACATGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACGAAATTCATCCAAATTATC</pcr_primer_p1>
		<pcr_primer_p2>AGTGAAGTCATGGCTATCGT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CACGAAATTCATCCAAATTATCATAGTACTGTAATTTTGTGAATTTTAAAGGTCGGGAGACATAAAAAACAAATCCTCGAAATCCTTATCGTGTAGGCCTCTTGAGTAGTTGAATTTGCCTCTTGAGTAGTTGGCCCGTTGTTGGAGATGCCGCGCCAATTCCGGCTGAGCCACGGTGGCTCGATTTGTGTCGCTTGCCGAATTTACACATGCAAATGGCACGATAGCCATGACTTCACT</canonical_amplicon>
		<polymorphic_amplicon>CACGAAATTCATCCAAATTATCATAGTACTGTAATTTTGTGAATTTTAAAGGTCGGGAGACATAAAAAACAAATCCTCGAAATCMTTATCGTGTAGGCCTCTTGAGTAGTTGAATTTGCCTCTTGAGTAGTTGGCCCGTTGTTGGAGATGCCGCGCCAATTCCGGCTGAGCCACGGTGGCTCGATTTGTGTCGCTTGCCGAATTTACACATGCAAATGGCACGATAGCCATGACTTCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36761</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>497853</contig_pos>
        <strand></strand>
        <context>GCTGAGCCAC[G/A]GTGGCTCGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAGTAGTTGGCCCGTTGTTGGAGATGCCGCGCCAATTCCGGCTGAGCCAC</left_flank>
        <right_flank>GTGGCTCGATTTGTGTCGCTTGCCGAATTTACACATGCAAATGGCACGAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTACCATATCCTTTTAGCTTCCGAAAACTTTTTCAATGCAAAATACGTTCAGAAATGTTAAAATGAAGCCAGCAATGATGGAAGAGAGAAATCCAAAAATCGCAATTGCGTGGGAGAGAGAAACCCAAGAGAGGTAACTATCGGTAATTTTGAGAAGCGTCACTGGCTAAAAAACCAAAACATGAAAATTGTCTTCTTTATCTTGAATTATCTTCAAAAACAGGAAATTAATTACTGAGCATACTACGGAAAAACAAATGAAAGTGGAACACATCCGCTCAGATTCTTTATGTTCGTCACAAAAGTTGTTCTTTCAGAGCTTTCCACGAAATTCATCCAAATTATCATAGTACTGTAATTTTGTGAATTTTAAAGGTCGGGAGACATAAAAAACAAATCCTCGAAATCCTTATCGTGTAGGCCTCTTGAGTAGTTGAATTTGCCTCTTGAGTAGTTGGCCCGTTGTTGGAGATGCCGCGCCAATTCCGGCTGAGCCACGGTGGCTCGATTTGTGTCGCTTGCCGAATTTACACATGCAAATGGCACGATAGCCATGACTTCACTGAACACGGCTCGTTGCAGTTGCGATGTTCCTAATAAGCAAACTTTTGAGTTGACGGGCTGATTGGTTGAACCAGCTATGATGGATGAAAGAGCATCTGAATGAACGATGAAAAACGTTTCATGAGTTAATTTTCAGGCTTCATTGATTATAAGTAACTTCAAAAATAGTTTCAAAACGTTCCTGTCGTCTGGTTTCCGTGTTGTTCAACGCGGTTAGCTTTGCATAAGCACACGGATTTCCGCAAGGTGTTCAGTATTTCTGTAAAATATTCCGATCATTGTTATTTTGACTTTAAAACAACGACTTTTAAGCGTGTTCCTGTATTCAGCTACAATGTACATGACCATGATTGAATCTGCAGCTGGGTATAAGCTGAAGCCTGATAATAGAACACCGGTTGGTAGGCTCAACTGTATTTCAAGTAATGGAATATA</canonical>
            <polymorphic>ATTACCATATCCTTTTAGCTTCCGAAAACTTTTTCAATGCAAAATACGTTCAGAAATGTTAAAATGAAGCCAGCAATGATGGAAGAGAGAAATCCAAAAATCGCAATTGCGTGGGAGAGAGAAACCCAAGAGAGGTAACTATCGGTAATTTTGAGAAGCGTCACTGGCTAAAAAACCAAAACATGAAAATTGTCTTCTTTATCTTGAATTATCTTCAAAAACAGGAAATTAATTACTGAGCATACTACGGAAAAACAAATGAAAGTGGAACACATCCGCTCAGATTCTTTATGTTCGTCACAAAAGTTGTTCTTTCAGAGCTTTCCACGAAATTCATCCAAATTATCATAGTACTGTAATTTTGTGAATTTTAAAGGTCGGGAGACATAAAAAACAAATCCTCGAAATCCTTATCGTGTAGGCCTCTTGAGTAGTTGAATTTGCCTCTTGAGTAGTTGGCCCGTTGTTGGAGATGCCGCGCCAATTCCGGCTGAGCCACRGTGGCTCGATTTGTGTCGCTTGCCGAATTTACACATGCAAATGGCACGATAGCCATGACTTCACTGAACACGGCTCGTTGCAGTTGCGATGTTCCTAATAAGCAAACTTTTGAGTTGACGGGCTGATTGGTTGAACCAGCTATGATGGATGAAAGAGCATCTGAATGAACGATGAAAAACGTTTCATGAGTTAATTTTCAGGCTTCATTGATTATAAGTAACTTCAAAAATAGTTTCAAAACGTTCCTGTCGTCTGGTTTCCGTGTTGTTCAACGCGGTTAGCTTTGCATAAGCACACGGATTTCCGCAAGGTGTTCAGTATTTCTGTAAAATATTCCGATCATTGTTATTTTGACTTTAAAACAACGACTTTTAAGCGTGTTCCTGTATTCAGCTACAATGTACATGACCATGATTGAATCTGCAGCTGGGTATAAGCTGAAGCCTGATAATAGAACACCGGTTGGTAGGCTCAACTGTATTTCAAGTAATGGAATATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGTTGAATTTGCCTCTTGAGTA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTCATCGTTCATTCAGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAGTTGAATTTGCCTCTTGAGTAGTTGGCCCGTTGTTGGAGATGCCGCGCCAATTCCGGCTGAGCCACGGTGGCTCGATTTGTGTCGCTTGCCGAATTTACACATGCAAATGGCACGATAGCCATGACTTCACTGAACACGGCTCGTTGCAGTTGCGATGTTCCTAATAAGCAAACTTTTGAGTTGACGGGCTGATTGGTTGAACCAGCTATGATGGATGAAAGAGCATCTGAATGAACGATGAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TAGTTGAATTTGCCTCTTGAGTAGTTGGCCCGTTGTTGGAGATGCCGCGCCAATTCCGGCTGAGCCACRGTGGCTCGATTTGTGTCGCTTGCCGAATTTACACATGCAAATGGCACGATAGCCATGACTTCACTGAACACGGCTCGTTGCAGTTGCGATGTTCCTAATAAGCAAACTTTTGAGTTGACGGGCTGATTGGTTGAACCAGCTATGATGGATGAAAGAGCATCTGAATGAACGATGAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36762</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>497887</contig_pos>
        <strand></strand>
        <context>CGAATTTACA[C/T]ATGCAAATGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCCGGCTGAGCCACGGTGGCTCGATTTGTGTCGCTTGCCGAATTTACA</left_flank>
        <right_flank>ATGCAAATGGCACGATAGCCATGACTTCACTGAACACGGCTCGTTGCAGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATGCAAAATACGTTCAGAAATGTTAAAATGAAGCCAGCAATGATGGAAGAGAGAAATCCAAAAATCGCAATTGCGTGGGAGAGAGAAACCCAAGAGAGGTAACTATCGGTAATTTTGAGAAGCGTCACTGGCTAAAAAACCAAAACATGAAAATTGTCTTCTTTATCTTGAATTATCTTCAAAAACAGGAAATTAATTACTGAGCATACTACGGAAAAACAAATGAAAGTGGAACACATCCGCTCAGATTCTTTATGTTCGTCACAAAAGTTGTTCTTTCAGAGCTTTCCACGAAATTCATCCAAATTATCATAGTACTGTAATTTTGTGAATTTTAAAGGTCGGGAGACATAAAAAACAAATCCTCGAAATCCTTATCGTGTAGGCCTCTTGAGTAGTTGAATTTGCCTCTTGAGTAGTTGGCCCGTTGTTGGAGATGCCGCGCCAATTCCGGCTGAGCCACGGTGGCTCGATTTGTGTCGCTTGCCGAATTTACACATGCAAATGGCACGATAGCCATGACTTCACTGAACACGGCTCGTTGCAGTTGCGATGTTCCTAATAAGCAAACTTTTGAGTTGACGGGCTGATTGGTTGAACCAGCTATGATGGATGAAAGAGCATCTGAATGAACGATGAAAAACGTTTCATGAGTTAATTTTCAGGCTTCATTGATTATAAGTAACTTCAAAAATAGTTTCAAAACGTTCCTGTCGTCTGGTTTCCGTGTTGTTCAACGCGGTTAGCTTTGCATAAGCACACGGATTTCCGCAAGGTGTTCAGTATTTCTGTAAAATATTCCGATCATTGTTATTTTGACTTTAAAACAACGACTTTTAAGCGTGTTCCTGTATTCAGCTACAATGTACATGACCATGATTGAATCTGCAGCTGGGTATAAGCTGAAGCCTGATAATAGAACACCGGTTGGTAGGCTCAACTGTATTTCAAGTAATGGAATATAAATAATGAAGGAGAGAGGTATGAATAGGAATATT</canonical>
            <polymorphic>CAATGCAAAATACGTTCAGAAATGTTAAAATGAAGCCAGCAATGATGGAAGAGAGAAATCCAAAAATCGCAATTGCGTGGGAGAGAGAAACCCAAGAGAGGTAACTATCGGTAATTTTGAGAAGCGTCACTGGCTAAAAAACCAAAACATGAAAATTGTCTTCTTTATCTTGAATTATCTTCAAAAACAGGAAATTAATTACTGAGCATACTACGGAAAAACAAATGAAAGTGGAACACATCCGCTCAGATTCTTTATGTTCGTCACAAAAGTTGTTCTTTCAGAGCTTTCCACGAAATTCATCCAAATTATCATAGTACTGTAATTTTGTGAATTTTAAAGGTCGGGAGACATAAAAAACAAATCCTCGAAATCCTTATCGTGTAGGCCTCTTGAGTAGTTGAATTTGCCTCTTGAGTAGTTGGCCCGTTGTTGGAGATGCCGCGCCAATTCCGGCTGAGCCACGGTGGCTCGATTTGTGTCGCTTGCCGAATTTACAYATGCAAATGGCACGATAGCCATGACTTCACTGAACACGGCTCGTTGCAGTTGCGATGTTCCTAATAAGCAAACTTTTGAGTTGACGGGCTGATTGGTTGAACCAGCTATGATGGATGAAAGAGCATCTGAATGAACGATGAAAAACGTTTCATGAGTTAATTTTCAGGCTTCATTGATTATAAGTAACTTCAAAAATAGTTTCAAAACGTTCCTGTCGTCTGGTTTCCGTGTTGTTCAACGCGGTTAGCTTTGCATAAGCACACGGATTTCCGCAAGGTGTTCAGTATTTCTGTAAAATATTCCGATCATTGTTATTTTGACTTTAAAACAACGACTTTTAAGCGTGTTCCTGTATTCAGCTACAATGTACATGACCATGATTGAATCTGCAGCTGGGTATAAGCTGAAGCCTGATAATAGAACACCGGTTGGTAGGCTCAACTGTATTTCAAGTAATGGAATATAAATAATGAAGGAGAGAGGTATGAATAGGAATATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>352 220 148 131 123 20 6</canonical_bands>
                <polymorphic_bands>372 220 148 131 123 6</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>195 104 80 79 78 75 67 52 50 39 30 28 27 18 17 17 13 12 7 5 5 2</canonical_bands>
                <polymorphic_bands>195 104 80 79 78 75 67 52 50 39 31 30 28 27 17 17 12 7 5 5 2</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>504 247 125 124</canonical_bands>
                <polymorphic_bands>628 247 125</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGTTGAATTTGCCTCTTGAGTA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTCATCGTTCATTCAGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAGTTGAATTTGCCTCTTGAGTAGTTGGCCCGTTGTTGGAGATGCCGCGCCAATTCCGGCTGAGCCACGGTGGCTCGATTTGTGTCGCTTGCCGAATTTACACATGCAAATGGCACGATAGCCATGACTTCACTGAACACGGCTCGTTGCAGTTGCGATGTTCCTAATAAGCAAACTTTTGAGTTGACGGGCTGATTGGTTGAACCAGCTATGATGGATGAAAGAGCATCTGAATGAACGATGAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TAGTTGAATTTGCCTCTTGAGTAGTTGGCCCGTTGTTGGAGATGCCGCGCCAATTCCGGCTGAGCCACGGTGGCTCGATTTGTGTCGCTTGCCGAATTTACAYATGCAAATGGCACGATAGCCATGACTTCACTGAACACGGCTCGTTGCAGTTGCGATGTTCCTAATAAGCAAACTTTTGAGTTGACGGGCTGATTGGTTGAACCAGCTATGATGGATGAAAGAGCATCTGAATGAACGATGAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36763</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>497939</contig_pos>
        <strand></strand>
        <context>CGTTGCAGTT[G/T]CRATGTTCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGCAAATGGCACGATAGCCATGACTTCACTGAACACGGCTCGTTGCAGTT</left_flank>
        <right_flank>CGATGTTCCTAATAAGCAAACTTTTGAGTTGACGGGCTGATTGGTTGAAC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAAATCCAAAAATCGCAATTGCGTGGGAGAGAGAAACCCAAGAGAGGTAACTATCGGTAATTTTGAGAAGCGTCACTGGCTAAAAAACCAAAACATGAAAATTGTCTTCTTTATCTTGAATTATCTTCAAAAACAGGAAATTAATTACTGAGCATACTACGGAAAAACAAATGAAAGTGGAACACATCCGCTCAGATTCTTTATGTTCGTCACAAAAGTTGTTCTTTCAGAGCTTTCCACGAAATTCATCCAAATTATCATAGTACTGTAATTTTGTGAATTTTAAAGGTCGGGAGACATAAAAAACAAATCCTCGAAATCCTTATCGTGTAGGCCTCTTGAGTAGTTGAATTTGCCTCTTGAGTAGTTGGCCCGTTGTTGGAGATGCCGCGCCAATTCCGGCTGAGCCACGGTGGCTCGATTTGTGTCGCTTGCCGAATTTACACATGCAAATGGCACGATAGCCATGACTTCACTGAACACGGCTCGTTGCAGTTGCGATGTTCCTAATAAGCAAACTTTTGAGTTGACGGGCTGATTGGTTGAACCAGCTATGATGGATGAAAGAGCATCTGAATGAACGATGAAAAACGTTTCATGAGTTAATTTTCAGGCTTCATTGATTATAAGTAACTTCAAAAATAGTTTCAAAACGTTCCTGTCGTCTGGTTTCCGTGTTGTTCAACGCGGTTAGCTTTGCATAAGCACACGGATTTCCGCAAGGTGTTCAGTATTTCTGTAAAATATTCCGATCATTGTTATTTTGACTTTAAAACAACGACTTTTAAGCGTGTTCCTGTATTCAGCTACAATGTACATGACCATGATTGAATCTGCAGCTGGGTATAAGCTGAAGCCTGATAATAGAACACCGGTTGGTAGGCTCAACTGTATTTCAAGTAATGGAATATAAATAATGAAGGAGAGAGGTATGAATAGGAATATTGAAGGCACTGTTATCTGAAACGAAAATGGATTAGAAAAATCACAGAAATAGA</canonical>
            <polymorphic>GAGAAATCCAAAAATCGCAATTGCGTGGGAGAGAGAAACCCAAGAGAGGTAACTATCGGTAATTTTGAGAAGCGTCACTGGCTAAAAAACCAAAACATGAAAATTGTCTTCTTTATCTTGAATTATCTTCAAAAACAGGAAATTAATTACTGAGCATACTACGGAAAAACAAATGAAAGTGGAACACATCCGCTCAGATTCTTTATGTTCGTCACAAAAGTTGTTCTTTCAGAGCTTTCCACGAAATTCATCCAAATTATCATAGTACTGTAATTTTGTGAATTTTAAAGGTCGGGAGACATAAAAAACAAATCCTCGAAATCCTTATCGTGTAGGCCTCTTGAGTAGTTGAATTTGCCTCTTGAGTAGTTGGCCCGTTGTTGGAGATGCCGCGCCAATTCCGGCTGAGCCACGGTGGCTCGATTTGTGTCGCTTGCCGAATTTACACATGCAAATGGCACGATAGCCATGACTTCACTGAACACGGCTCGTTGCAGTTKCGATGTTCCTAATAAGCAAACTTTTGAGTTGACGGGCTGATTGGTTGAACCAGCTATGATGGATGAAAGAGCATCTGAATGAACGATGAAAAACGTTTCATGAGTTAATTTTCAGGCTTCATTGATTATAAGTAACTTCAAAAATAGTTTCAAAACGTTCCTGTCGTCTGGTTTCCGTGTTGTTCAACGCGGTTAGCTTTGCATAAGCACACGGATTTCCGCAAGGTGTTCAGTATTTCTGTAAAATATTCCGATCATTGTTATTTTGACTTTAAAACAACGACTTTTAAGCGTGTTCCTGTATTCAGCTACAATGTACATGACCATGATTGAATCTGCAGCTGGGTATAAGCTGAAGCCTGATAATAGAACACCGGTTGGTAGGCTCAACTGTATTTCAAGTAATGGAATATAAATAATGAAGGAGAGAGGTATGAATAGGAATATTGAAGGCACTGTTATCTGAAACGAAAATGGATTAGAAAAATCACAGAAATAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTTGAATTTGCCTCTTGAGTA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTCATCGTTCATTCAGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAGTTGAATTTGCCTCTTGAGTAGTTGGCCCGTTGTTGGAGATGCCGCGCCAATTCCGGCTGAGCCACGGTGGCTCGATTTGTGTCGCTTGCCGAATTTACACATGCAAATGGCACGATAGCCATGACTTCACTGAACACGGCTCGTTGCAGTTGCGATGTTCCTAATAAGCAAACTTTTGAGTTGACGGGCTGATTGGTTGAACCAGCTATGATGGATGAAAGAGCATCTGAATGAACGATGAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TAGTTGAATTTGCCTCTTGAGTAGTTGGCCCGTTGTTGGAGATGCCGCGCCAATTCCGGCTGAGCCACGGTGGCTCGATTTGTGTCGCTTGCCGAATTTACACATGCAAATGGCACGATAGCCATGACTTCACTGAACACGGCTCGTTGCAGTTKCGATGTTCCTAATAAGCAAACTTTTGAGTTGACGGGCTGATTGGTTGAACCAGCTATGATGGATGAAAGAGCATCTGAATGAACGATGAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36764</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>497941</contig_pos>
        <strand></strand>
        <context>TTGCAGTTKC[G/A]ATGTTCCTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAAATGGCACGATAGCCATGACTTCACTGAACACGGCTCGTTGCAGTTGC</left_flank>
        <right_flank>ATGTTCCTAATAAGCAAACTTTTGAGTTGACGGGCTGATTGGTTGAACCA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATCCAAAAATCGCAATTGCGTGGGAGAGAGAAACCCAAGAGAGGTAACTATCGGTAATTTTGAGAAGCGTCACTGGCTAAAAAACCAAAACATGAAAATTGTCTTCTTTATCTTGAATTATCTTCAAAAACAGGAAATTAATTACTGAGCATACTACGGAAAAACAAATGAAAGTGGAACACATCCGCTCAGATTCTTTATGTTCGTCACAAAAGTTGTTCTTTCAGAGCTTTCCACGAAATTCATCCAAATTATCATAGTACTGTAATTTTGTGAATTTTAAAGGTCGGGAGACATAAAAAACAAATCCTCGAAATCCTTATCGTGTAGGCCTCTTGAGTAGTTGAATTTGCCTCTTGAGTAGTTGGCCCGTTGTTGGAGATGCCGCGCCAATTCCGGCTGAGCCACGGTGGCTCGATTTGTGTCGCTTGCCGAATTTACACATGCAAATGGCACGATAGCCATGACTTCACTGAACACGGCTCGTTGCAGTTGCGATGTTCCTAATAAGCAAACTTTTGAGTTGACGGGCTGATTGGTTGAACCAGCTATGATGGATGAAAGAGCATCTGAATGAACGATGAAAAACGTTTCATGAGTTAATTTTCAGGCTTCATTGATTATAAGTAACTTCAAAAATAGTTTCAAAACGTTCCTGTCGTCTGGTTTCCGTGTTGTTCAACGCGGTTAGCTTTGCATAAGCACACGGATTTCCGCAAGGTGTTCAGTATTTCTGTAAAATATTCCGATCATTGTTATTTTGACTTTAAAACAACGACTTTTAAGCGTGTTCCTGTATTCAGCTACAATGTACATGACCATGATTGAATCTGCAGCTGGGTATAAGCTGAAGCCTGATAATAGAACACCGGTTGGTAGGCTCAACTGTATTTCAAGTAATGGAATATAAATAATGAAGGAGAGAGGTATGAATAGGAATATTGAAGGCACTGTTATCTGAAACGAAAATGGATTAGAAAAATCACAGAAATAGACA</canonical>
            <polymorphic>GAAATCCAAAAATCGCAATTGCGTGGGAGAGAGAAACCCAAGAGAGGTAACTATCGGTAATTTTGAGAAGCGTCACTGGCTAAAAAACCAAAACATGAAAATTGTCTTCTTTATCTTGAATTATCTTCAAAAACAGGAAATTAATTACTGAGCATACTACGGAAAAACAAATGAAAGTGGAACACATCCGCTCAGATTCTTTATGTTCGTCACAAAAGTTGTTCTTTCAGAGCTTTCCACGAAATTCATCCAAATTATCATAGTACTGTAATTTTGTGAATTTTAAAGGTCGGGAGACATAAAAAACAAATCCTCGAAATCCTTATCGTGTAGGCCTCTTGAGTAGTTGAATTTGCCTCTTGAGTAGTTGGCCCGTTGTTGGAGATGCCGCGCCAATTCCGGCTGAGCCACGGTGGCTCGATTTGTGTCGCTTGCCGAATTTACACATGCAAATGGCACGATAGCCATGACTTCACTGAACACGGCTCGTTGCAGTTGCRATGTTCCTAATAAGCAAACTTTTGAGTTGACGGGCTGATTGGTTGAACCAGCTATGATGGATGAAAGAGCATCTGAATGAACGATGAAAAACGTTTCATGAGTTAATTTTCAGGCTTCATTGATTATAAGTAACTTCAAAAATAGTTTCAAAACGTTCCTGTCGTCTGGTTTCCGTGTTGTTCAACGCGGTTAGCTTTGCATAAGCACACGGATTTCCGCAAGGTGTTCAGTATTTCTGTAAAATATTCCGATCATTGTTATTTTGACTTTAAAACAACGACTTTTAAGCGTGTTCCTGTATTCAGCTACAATGTACATGACCATGATTGAATCTGCAGCTGGGTATAAGCTGAAGCCTGATAATAGAACACCGGTTGGTAGGCTCAACTGTATTTCAAGTAATGGAATATAAATAATGAAGGAGAGAGGTATGAATAGGAATATTGAAGGCACTGTTATCTGAAACGAAAATGGATTAGAAAAATCACAGAAATAGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTTGAATTTGCCTCTTGAGTA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTCATCGTTCATTCAGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAGTTGAATTTGCCTCTTGAGTAGTTGGCCCGTTGTTGGAGATGCCGCGCCAATTCCGGCTGAGCCACGGTGGCTCGATTTGTGTCGCTTGCCGAATTTACACATGCAAATGGCACGATAGCCATGACTTCACTGAACACGGCTCGTTGCAGTTGCGATGTTCCTAATAAGCAAACTTTTGAGTTGACGGGCTGATTGGTTGAACCAGCTATGATGGATGAAAGAGCATCTGAATGAACGATGAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TAGTTGAATTTGCCTCTTGAGTAGTTGGCCCGTTGTTGGAGATGCCGCGCCAATTCCGGCTGAGCCACGGTGGCTCGATTTGTGTCGCTTGCCGAATTTACACATGCAAATGGCACGATAGCCATGACTTCACTGAACACGGCTCGTTGCAGTTGCRATGTTCCTAATAAGCAAACTTTTGAGTTGACGGGCTGATTGGTTGAACCAGCTATGATGGATGAAAGAGCATCTGAATGAACGATGAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36765</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>497993</contig_pos>
        <strand></strand>
        <context>GTTGAACCAG[C/T]TATGATGGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTTCCTAATAAGCAAACTTTTGAGTTGACGGGCTGATTGGTTGAACCAG</left_flank>
        <right_flank>TATGATGGATGAAAGAGCATCTGAATGAACGATGAAAAACGTTTCATGAG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGGTAATTTTGAGAAGCGTCACTGGCTAAAAAACCAAAACATGAAAATTGTCTTCTTTATCTTGAATTATCTTCAAAAACAGGAAATTAATTACTGAGCATACTACGGAAAAACAAATGAAAGTGGAACACATCCGCTCAGATTCTTTATGTTCGTCACAAAAGTTGTTCTTTCAGAGCTTTCCACGAAATTCATCCAAATTATCATAGTACTGTAATTTTGTGAATTTTAAAGGTCGGGAGACATAAAAAACAAATCCTCGAAATCCTTATCGTGTAGGCCTCTTGAGTAGTTGAATTTGCCTCTTGAGTAGTTGGCCCGTTGTTGGAGATGCCGCGCCAATTCCGGCTGAGCCACGGTGGCTCGATTTGTGTCGCTTGCCGAATTTACACATGCAAATGGCACGATAGCCATGACTTCACTGAACACGGCTCGTTGCAGTTGCGATGTTCCTAATAAGCAAACTTTTGAGTTGACGGGCTGATTGGTTGAACCAGCTATGATGGATGAAAGAGCATCTGAATGAACGATGAAAAACGTTTCATGAGTTAATTTTCAGGCTTCATTGATTATAAGTAACTTCAAAAATAGTTTCAAAACGTTCCTGTCGTCTGGTTTCCGTGTTGTTCAACGCGGTTAGCTTTGCATAAGCACACGGATTTCCGCAAGGTGTTCAGTATTTCTGTAAAATATTCCGATCATTGTTATTTTGACTTTAAAACAACGACTTTTAAGCGTGTTCCTGTATTCAGCTACAATGTACATGACCATGATTGAATCTGCAGCTGGGTATAAGCTGAAGCCTGATAATAGAACACCGGTTGGTAGGCTCAACTGTATTTCAAGTAATGGAATATAAATAATGAAGGAGAGAGGTATGAATAGGAATATTGAAGGCACTGTTATCTGAAACGAAAATGGATTAGAAAAATCACAGAAATAGACACATGTCAATCTAACCTGAAGCATTAAAGTTTTGAAGAGTTGTTTGTGATGAT</canonical>
            <polymorphic>ATCGGTAATTTTGAGAAGCGTCACTGGCTAAAAAACCAAAACATGAAAATTGTCTTCTTTATCTTGAATTATCTTCAAAAACAGGAAATTAATTACTGAGCATACTACGGAAAAACAAATGAAAGTGGAACACATCCGCTCAGATTCTTTATGTTCGTCACAAAAGTTGTTCTTTCAGAGCTTTCCACGAAATTCATCCAAATTATCATAGTACTGTAATTTTGTGAATTTTAAAGGTCGGGAGACATAAAAAACAAATCCTCGAAATCCTTATCGTGTAGGCCTCTTGAGTAGTTGAATTTGCCTCTTGAGTAGTTGGCCCGTTGTTGGAGATGCCGCGCCAATTCCGGCTGAGCCACGGTGGCTCGATTTGTGTCGCTTGCCGAATTTACACATGCAAATGGCACGATAGCCATGACTTCACTGAACACGGCTCGTTGCAGTTGCGATGTTCCTAATAAGCAAACTTTTGAGTTGACGGGCTGATTGGTTGAACCAGYTATGATGGATGAAAGAGCATCTGAATGAACGATGAAAAACGTTTCATGAGTTAATTTTCAGGCTTCATTGATTATAAGTAACTTCAAAAATAGTTTCAAAACGTTCCTGTCGTCTGGTTTCCGTGTTGTTCAACGCGGTTAGCTTTGCATAAGCACACGGATTTCCGCAAGGTGTTCAGTATTTCTGTAAAATATTCCGATCATTGTTATTTTGACTTTAAAACAACGACTTTTAAGCGTGTTCCTGTATTCAGCTACAATGTACATGACCATGATTGAATCTGCAGCTGGGTATAAGCTGAAGCCTGATAATAGAACACCGGTTGGTAGGCTCAACTGTATTTCAAGTAATGGAATATAAATAATGAAGGAGAGAGGTATGAATAGGAATATTGAAGGCACTGTTATCTGAAACGAAAATGGATTAGAAAAATCACAGAAATAGACACATGTCAATCTAACCTGAAGCATTAAAGTTTTGAAGAGTTGTTTGTGATGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>319 202 180 143 112 33 11</canonical_bands>
                <polymorphic_bands>462 202 180 112 33 11</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>169 153 112 102 80 63 49 48 37 33 31 27 27 21 17 11 9 6 5</canonical_bands>
                <polymorphic_bands>169 153 112 102 80 80 49 48 37 33 31 27 27 21 11 9 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGATAGCCATGACTTCACT</pcr_primer_p1>
		<pcr_primer_p2>GTGCTTATGCAAAGCTAACC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACGATAGCCATGACTTCACTGAACACGGCTCGTTGCAGTTGCGATGTTCCTAATAAGCAAACTTTTGAGTTGACGGGCTGATTGGTTGAACCAGCTATGATGGATGAAAGAGCATCTGAATGAACGATGAAAAACGTTTCATGAGTTAATTTTCAGGCTTCATTGATTATAAGTAACTTCAAAAATAGTTTCAAAACGTTCCTGTCGTCTGGTTTCCGTGTTGTTCAACGCGGTTAGCTTTGCATAAGCAC</canonical_amplicon>
		<polymorphic_amplicon>ACGATAGCCATGACTTCACTGAACACGGCTCGTTGCAGTTGCGATGTTCCTAATAAGCAAACTTTTGAGTTGACGGGCTGATTGGTTGAACCAGYTATGATGGATGAAAGAGCATCTGAATGAACGATGAAAAACGTTTCATGAGTTAATTTTCAGGCTTCATTGATTATAAGTAACTTCAAAAATAGTTTCAAAACGTTCCTGTCGTCTGGTTTCCGTGTTGTTCAACGCGGTTAGCTTTGCATAAGCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36766</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>498104</contig_pos>
        <strand></strand>
        <context>ACGTTCCTGT[C/T]GTCTGGTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCTTCATTGATTATAAGTAACTTCAAAAATAGTTTCAAAACGTTCCTGT</left_flank>
        <right_flank>GTCTGGTTTCCGTGTTGTTCAACGCGGTTAGCTTTGCATAAGCACACGGA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACAAATGAAAGTGGAACACATCCGCTCAGATTCTTTATGTTCGTCACAAAAGTTGTTCTTTCAGAGCTTTCCACGAAATTCATCCAAATTATCATAGTACTGTAATTTTGTGAATTTTAAAGGTCGGGAGACATAAAAAACAAATCCTCGAAATCCTTATCGTGTAGGCCTCTTGAGTAGTTGAATTTGCCTCTTGAGTAGTTGGCCCGTTGTTGGAGATGCCGCGCCAATTCCGGCTGAGCCACGGTGGCTCGATTTGTGTCGCTTGCCGAATTTACACATGCAAATGGCACGATAGCCATGACTTCACTGAACACGGCTCGTTGCAGTTGCGATGTTCCTAATAAGCAAACTTTTGAGTTGACGGGCTGATTGGTTGAACCAGCTATGATGGATGAAAGAGCATCTGAATGAACGATGAAAAACGTTTCATGAGTTAATTTTCAGGCTTCATTGATTATAAGTAACTTCAAAAATAGTTTCAAAACGTTCCTGTCGTCTGGTTTCCGTGTTGTTCAACGCGGTTAGCTTTGCATAAGCACACGGATTTCCGCAAGGTGTTCAGTATTTCTGTAAAATATTCCGATCATTGTTATTTTGACTTTAAAACAACGACTTTTAAGCGTGTTCCTGTATTCAGCTACAATGTACATGACCATGATTGAATCTGCAGCTGGGTATAAGCTGAAGCCTGATAATAGAACACCGGTTGGTAGGCTCAACTGTATTTCAAGTAATGGAATATAAATAATGAAGGAGAGAGGTATGAATAGGAATATTGAAGGCACTGTTATCTGAAACGAAAATGGATTAGAAAAATCACAGAAATAGACACATGTCAATCTAACCTGAAGCATTAAAGTTTTGAAGAGTTGTTTGTGATGATTTTTGTGCATTGTAGAGAAATTCTGAAGTTTTTCCTCCATTTTCGTAAACATTGAGTAACCACAATGGATCATTATTGCATACTGAATAGCCATTATAAAAGACATATTCA</canonical>
            <polymorphic>AAAACAAATGAAAGTGGAACACATCCGCTCAGATTCTTTATGTTCGTCACAAAAGTTGTTCTTTCAGAGCTTTCCACGAAATTCATCCAAATTATCATAGTACTGTAATTTTGTGAATTTTAAAGGTCGGGAGACATAAAAAACAAATCCTCGAAATCCTTATCGTGTAGGCCTCTTGAGTAGTTGAATTTGCCTCTTGAGTAGTTGGCCCGTTGTTGGAGATGCCGCGCCAATTCCGGCTGAGCCACGGTGGCTCGATTTGTGTCGCTTGCCGAATTTACACATGCAAATGGCACGATAGCCATGACTTCACTGAACACGGCTCGTTGCAGTTGCGATGTTCCTAATAAGCAAACTTTTGAGTTGACGGGCTGATTGGTTGAACCAGCTATGATGGATGAAAGAGCATCTGAATGAACGATGAAAAACGTTTCATGAGTTAATTTTCAGGCTTCATTGATTATAAGTAACTTCAAAAATAGTTTCAAAACGTTCCTGTYGTCTGGTTTCCGTGTTGTTCAACGCGGTTAGCTTTGCATAAGCACACGGATTTCCGCAAGGTGTTCAGTATTTCTGTAAAATATTCCGATCATTGTTATTTTGACTTTAAAACAACGACTTTTAAGCGTGTTCCTGTATTCAGCTACAATGTACATGACCATGATTGAATCTGCAGCTGGGTATAAGCTGAAGCCTGATAATAGAACACCGGTTGGTAGGCTCAACTGTATTTCAAGTAATGGAATATAAATAATGAAGGAGAGAGGTATGAATAGGAATATTGAAGGCACTGTTATCTGAAACGAAAATGGATTAGAAAAATCACAGAAATAGACACATGTCAATCTAACCTGAAGCATTAAAGTTTTGAAGAGTTGTTTGTGATGATTTTTGTGCATTGTAGAGAAATTCTGAAGTTTTTCCTCCATTTTCGTAAACATTGAGTAACCACAATGGATCATTATTGCATACTGAATAGCCATTATAAAAGACATATTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAAGCAAACTTTTGAGTTGAC</pcr_primer_p1>
		<pcr_primer_p2>ACAATGATCGGAATATTTTACAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATAAGCAAACTTTTGAGTTGACGGGCTGATTGGTTGAACCAGCTATGATGGATGAAAGAGCATCTGAATGAACGATGAAAAACGTTTCATGAGTTAATTTTCAGGCTTCATTGATTATAAGTAACTTCAAAAATAGTTTCAAAACGTTCCTGTCGTCTGGTTTCCGTGTTGTTCAACGCGGTTAGCTTTGCATAAGCACACGGATTTCCGCAAGGTGTTCAGTATTTCTGTAAAATATTCCGATCATTGT</canonical_amplicon>
		<polymorphic_amplicon>AATAAGCAAACTTTTGAGTTGACGGGCTGATTGGTTGAACCAGCTATGATGGATGAAAGAGCATCTGAATGAACGATGAAAAACGTTTCATGAGTTAATTTTCAGGCTTCATTGATTATAAGTAACTTCAAAAATAGTTTCAAAACGTTCCTGTYGTCTGGTTTCCGTGTTGTTCAACGCGGTTAGCTTTGCATAAGCACACGGATTTCCGCAAGGTGTTCAGTATTTCTGTAAAATATTCCGATCATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36767</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>498168</contig_pos>
        <strand></strand>
        <context>CCGCAAGGTG[T/A]TCAGTATTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GTTGTTCAACGCGGTTAGCTTTGCATAAGCACACGGATTTCCGCAAGGTG</left_flank>
        <right_flank>TCAGTATTTCTGTAAAATATTCCGATCATTGTTATTTTGACTTTAAAACA</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAGCTTTCCACGAAATTCATCCAAATTATCATAGTACTGTAATTTTGTGAATTTTAAAGGTCGGGAGACATAAAAAACAAATCCTCGAAATCCTTATCGTGTAGGCCTCTTGAGTAGTTGAATTTGCCTCTTGAGTAGTTGGCCCGTTGTTGGAGATGCCGCGCCAATTCCGGCTGAGCCACGGTGGCTCGATTTGTGTCGCTTGCCGAATTTACACATGCAAATGGCACGATAGCCATGACTTCACTGAACACGGCTCGTTGCAGTTGCGATGTTCCTAATAAGCAAACTTTTGAGTTGACGGGCTGATTGGTTGAACCAGCTATGATGGATGAAAGAGCATCTGAATGAACGATGAAAAACGTTTCATGAGTTAATTTTCAGGCTTCATTGATTATAAGTAACTTCAAAAATAGTTTCAAAACGTTCCTGTCGTCTGGTTTCCGTGTTGTTCAACGCGGTTAGCTTTGCATAAGCACACGGATTTCCGCAAGGTGTTCAGTATTTCTGTAAAATATTCCGATCATTGTTATTTTGACTTTAAAACAACGACTTTTAAGCGTGTTCCTGTATTCAGCTACAATGTACATGACCATGATTGAATCTGCAGCTGGGTATAAGCTGAAGCCTGATAATAGAACACCGGTTGGTAGGCTCAACTGTATTTCAAGTAATGGAATATAAATAATGAAGGAGAGAGGTATGAATAGGAATATTGAAGGCACTGTTATCTGAAACGAAAATGGATTAGAAAAATCACAGAAATAGACACATGTCAATCTAACCTGAAGCATTAAAGTTTTGAAGAGTTGTTTGTGATGATTTTTGTGCATTGTAGAGAAATTCTGAAGTTTTTCCTCCATTTTCGTAAACATTGAGTAACCACAATGGATCATTATTGCATACTGAATAGCCATTATAAAAGACATATTCACAACCGTCATCAGGTTCCACCATCGGATGTCACCACTAGAAGGATCGAATGCAACCATTGCCAG</canonical>
            <polymorphic>CAGAGCTTTCCACGAAATTCATCCAAATTATCATAGTACTGTAATTTTGTGAATTTTAAAGGTCGGGAGACATAAAAAACAAATCCTCGAAATCCTTATCGTGTAGGCCTCTTGAGTAGTTGAATTTGCCTCTTGAGTAGTTGGCCCGTTGTTGGAGATGCCGCGCCAATTCCGGCTGAGCCACGGTGGCTCGATTTGTGTCGCTTGCCGAATTTACACATGCAAATGGCACGATAGCCATGACTTCACTGAACACGGCTCGTTGCAGTTGCGATGTTCCTAATAAGCAAACTTTTGAGTTGACGGGCTGATTGGTTGAACCAGCTATGATGGATGAAAGAGCATCTGAATGAACGATGAAAAACGTTTCATGAGTTAATTTTCAGGCTTCATTGATTATAAGTAACTTCAAAAATAGTTTCAAAACGTTCCTGTCGTCTGGTTTCCGTGTTGTTCAACGCGGTTAGCTTTGCATAAGCACACGGATTTCCGCAAGGTGWTCAGTATTTCTGTAAAATATTCCGATCATTGTTATTTTGACTTTAAAACAACGACTTTTAAGCGTGTTCCTGTATTCAGCTACAATGTACATGACCATGATTGAATCTGCAGCTGGGTATAAGCTGAAGCCTGATAATAGAACACCGGTTGGTAGGCTCAACTGTATTTCAAGTAATGGAATATAAATAATGAAGGAGAGAGGTATGAATAGGAATATTGAAGGCACTGTTATCTGAAACGAAAATGGATTAGAAAAATCACAGAAATAGACACATGTCAATCTAACCTGAAGCATTAAAGTTTTGAAGAGTTGTTTGTGATGATTTTTGTGCATTGTAGAGAAATTCTGAAGTTTTTCCTCCATTTTCGTAAACATTGAGTAACCACAATGGATCATTATTGCATACTGAATAGCCATTATAAAAGACATATTCACAACCGTCATCAGGTTCCACCATCGGATGTCACCACTAGAAGGATCGAATGCAACCATTGCCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATAGTTTCAAAACGTTCCTGT</pcr_primer_p1>
		<pcr_primer_p2>CTACCAACCGGTGTTCTATTAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAATAGTTTCAAAACGTTCCTGTCGTCTGGTTTCCGTGTTGTTCAACGCGGTTAGCTTTGCATAAGCACACGGATTTCCGCAAGGTGTTCAGTATTTCTGTAAAATATTCCGATCATTGTTATTTTGACTTTAAAACAACGACTTTTAAGCGTGTTCCTGTATTCAGCTACAATGTACATGACCATGATTGAATCTGCAGCTGGGTATAAGCTGAAGCCTGATAATAGAACACCGGTTGGTAG</canonical_amplicon>
		<polymorphic_amplicon>AAATAGTTTCAAAACGTTCCTGTCGTCTGGTTTCCGTGTTGTTCAACGCGGTTAGCTTTGCATAAGCACACGGATTTCCGCAAGGTGWTCAGTATTTCTGTAAAATATTCCGATCATTGTTATTTTGACTTTAAAACAACGACTTTTAAGCGTGTTCCTGTATTCAGCTACAATGTACATGACCATGATTGAATCTGCAGCTGGGTATAAGCTGAAGCCTGATAATAGAACACCGGTTGGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36768</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>509054</contig_pos>
        <strand>+</strand>
        <context>TATAGTTTCT[G/T]TAGACTAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTATGAATTCTGATTAACAGTAGAAATGAAGGAGACTAACTATAGTTTCT</left_flank>
        <right_flank>TAGACTAAATCTCTTATTCTATCTCACCAAAGCTGACATAAATACTCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACCAGAACAAAAACGTTCAGCGAAGTTCAAGTGTACTTCAACAAGTCATAAAATGTTACAAGAACAAAAAAAAGAAGTCGGACATGAGGTACAAAGGGTTGAGGGCCGGTAGACAGGTCTTGTGATAAAGTTTTATGAATATTGAAAACTTTTGACTTAAAAATTTAGAAGAATAAGAAAAGCGAAGAATGAAAATCAGAAGAACTGGCGATAACTATTTTTATTGGTTTAGTGGTATGATTCGCATTCAAATAAATTATAAAGAAAAAGAATTTTCTTTAGATAGATTTATTCTGACTTTAGATAGATTTATTCTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCGTATAATTAGGAGAGGTAACGAATATCATTAACAATACATTAAAAAAGGGAACAATTTATGAATTCTGATTAACAGTAGAAATGAAGGAGACTAACTATAGTTTCTTTAGACTAAATCTCTTATTCTATCTCACCAAAGCTGACATAAATACTCAAATAAAACATCCTCATTCGGATTGTTTGAGAGTCAAGTTTGAGAGATAGAAAGCATATTTTTGAATAAATTAAGAACTGGATGAAGGGACACTTCCGAAACTGTTGATGCCAAATGGAAACGCTGAAGCAAACATCTGAAAATAAGAAGAATCTTACCAGTTAAAGAAAATTATACAGTGTTTATATAATTCATGTGATAATTGGAGTAGAACGTGTTAAATCAACAACATCCCTATTAAAAGTATTGTTTGTTAAAGGAGAACTCCGACCAAAAATTTTTATTGCATTAAAATGTTCGCAACGTTGTCTATTTTCCCAATATTATCACGAGAAAATTCGAAAAAAATCCGAAATCCCCGAAAAATGCCGTTAAAAGCGAAAAAATTTCAAAAAAAGTTGCTAGGAGGGACGAGGATTTGAATTTCCGCGCAGTGAGAAACCTCGGCCACGG</canonical>
            <polymorphic>CACCAGAACAAAAACGTTCAGCGAAGTTCAAGTGTACTTCAACAAGTCATAAAATGTTACAAGAACAAAAAAAAGAAGTCGGACATGAGGTACAAAGGGTTGAGGGCCGGTAGACAGGTCTTGTGATAAAGTTTTATGAATATTGAAAACTTTTGACTTAAAAATTTAGAAGAATAAGAAAAGCGAAGAATGAAAATCAGAAGAACTGGCGATAACTATTTTTATTGGTTTAGTGGTATGATTCGCATTCAAATAAATTATAAAGAAAAAGAATTTTCTTTAGATAGATTTATTCTGACTTTAGATAGATTTATTCTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCGTATAATTAGGAGAGGTAACGAATATCATTAACAATACATTAAAAAAGGGAACAATTTATGAATTCTGATTAACAGTAGAAATGAAGGAGACTAACTATAGTTTCTKTAGACTAAATCTCTTATTCTATCTCACCAAAGCTGACATAAATACTCAAATAAAACATCCTCATTCGGATTGTTTGAGAGTCAAGTTTGAGAGATAGAAAGCATATTTTTGAATAAATTAAGAACTGGATGAAGGGACACTTCCGAAACTGTTGATGCCAAATGGAAACGCTGAAGCAAACATCTGAAAATAAGAAGAATCTTACCAGTTAAAGAAAATTATACAGTGTTTATATAATTCATGTGATAATTGGAGTAGAACGTGTTAAATCAACAACATCCCTATTAAAAGTATTGTTTGTTAAAGGAGAACTCCGACCAAAAATTTTTATTGCATTAAAATGTTCGCAACGTTGTCTATTTTCCCAATATTATCACGAGAAAATTCGAAAAAAATCCGAAATCCCCGAAAAATGCCGTTAAAAGCGAAAAAATTTCAAAAAAAGTTGCTAGGAGGGACGAGGATTTGAATTTCCGCGCAGTGAGAAACCTCGGCCACGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGAACAATTTATGAATTCTGAT</pcr_primer_p1>
		<pcr_primer_p2>TATTTTCAGATGTTTGCTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGGAACAATTTATGAATTCTGATTAACAGTAGAAATGAAGGAGACTAACTATAGTTTCTTTAGACTAAATCTCTTATTCTATCTCACCAAAGCTGACATAAATACTCAAATAAAACATCCTCATTCGGATTGTTTGAGAGTCAAGTTTGAGAGATAGAAAGCATATTTTTGAATAAATTAAGAACTGGATGAAGGGACACTTCCGAAACTGTTGATGCCAAATGGAAACGCTGAAGCAAACATCTGAAAATA</canonical_amplicon>
		<polymorphic_amplicon>GGGAACAATTTATGAATTCTGATTAACAGTAGAAATGAAGGAGACTAACTATAGTTTCTKTAGACTAAATCTCTTATTCTATCTCACCAAAGCTGACATAAATACTCAAATAAAACATCCTCATTCGGATTGTTTGAGAGTCAAGTTTGAGAGATAGAAAGCATATTTTTGAATAAATTAAGAACTGGATGAAGGGACACTTCCGAAACTGTTGATGCCAAATGGAAACGCTGAAGCAAACATCTGAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36769</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>509080</contig_pos>
        <strand>+</strand>
        <context>ATTCTATCTC[A/C]CCAAAGCTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGAAGGAGACTAACTATAGTTTCTTTAGACTAAATCTCTTATTCTATCTC</left_flank>
        <right_flank>CCAAAGCTGACATAAATACTCAAATAAAACATCCTCATTCGGATTGTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAAGTGTACTTCAACAAGTCATAAAATGTTACAAGAACAAAAAAAAGAAGTCGGACATGAGGTACAAAGGGTTGAGGGCCGGTAGACAGGTCTTGTGATAAAGTTTTATGAATATTGAAAACTTTTGACTTAAAAATTTAGAAGAATAAGAAAAGCGAAGAATGAAAATCAGAAGAACTGGCGATAACTATTTTTATTGGTTTAGTGGTATGATTCGCATTCAAATAAATTATAAAGAAAAAGAATTTTCTTTAGATAGATTTATTCTGACTTTAGATAGATTTATTCTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCGTATAATTAGGAGAGGTAACGAATATCATTAACAATACATTAAAAAAGGGAACAATTTATGAATTCTGATTAACAGTAGAAATGAAGGAGACTAACTATAGTTTCTTTAGACTAAATCTCTTATTCTATCTCACCAAAGCTGACATAAATACTCAAATAAAACATCCTCATTCGGATTGTTTGAGAGTCAAGTTTGAGAGATAGAAAGCATATTTTTGAATAAATTAAGAACTGGATGAAGGGACACTTCCGAAACTGTTGATGCCAAATGGAAACGCTGAAGCAAACATCTGAAAATAAGAAGAATCTTACCAGTTAAAGAAAATTATACAGTGTTTATATAATTCATGTGATAATTGGAGTAGAACGTGTTAAATCAACAACATCCCTATTAAAAGTATTGTTTGTTAAAGGAGAACTCCGACCAAAAATTTTTATTGCATTAAAATGTTCGCAACGTTGTCTATTTTCCCAATATTATCACGAGAAAATTCGAAAAAAATCCGAAATCCCCGAAAAATGCCGTTAAAAGCGAAAAAATTTCAAAAAAAGTTGCTAGGAGGGACGAGGATTTGAATTTCCGCGCAGTGAGAAACCTCGGCCACGGAGCCTGATAGCCGTTTTTTCAAGTGG</canonical>
            <polymorphic>TTCAAGTGTACTTCAACAAGTCATAAAATGTTACAAGAACAAAAAAAAGAAGTCGGACATGAGGTACAAAGGGTTGAGGGCCGGTAGACAGGTCTTGTGATAAAGTTTTATGAATATTGAAAACTTTTGACTTAAAAATTTAGAAGAATAAGAAAAGCGAAGAATGAAAATCAGAAGAACTGGCGATAACTATTTTTATTGGTTTAGTGGTATGATTCGCATTCAAATAAATTATAAAGAAAAAGAATTTTCTTTAGATAGATTTATTCTGACTTTAGATAGATTTATTCTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCGTATAATTAGGAGAGGTAACGAATATCATTAACAATACATTAAAAAAGGGAACAATTTATGAATTCTGATTAACAGTAGAAATGAAGGAGACTAACTATAGTTTCTTTAGACTAAATCTCTTATTCTATCTCMCCAAAGCTGACATAAATACTCAAATAAAACATCCTCATTCGGATTGTTTGAGAGTCAAGTTTGAGAGATAGAAAGCATATTTTTGAATAAATTAAGAACTGGATGAAGGGACACTTCCGAAACTGTTGATGCCAAATGGAAACGCTGAAGCAAACATCTGAAAATAAGAAGAATCTTACCAGTTAAAGAAAATTATACAGTGTTTATATAATTCATGTGATAATTGGAGTAGAACGTGTTAAATCAACAACATCCCTATTAAAAGTATTGTTTGTTAAAGGAGAACTCCGACCAAAAATTTTTATTGCATTAAAATGTTCGCAACGTTGTCTATTTTCCCAATATTATCACGAGAAAATTCGAAAAAAATCCGAAATCCCCGAAAAATGCCGTTAAAAGCGAAAAAATTTCAAAAAAAGTTGCTAGGAGGGACGAGGATTTGAATTTCCGCGCAGTGAGAAACCTCGGCCACGGAGCCTGATAGCCGTTTTTTCAAGTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>291 113 112 110 107 91 89 28 19 17 14 8 1</canonical_bands>
                <polymorphic_bands>404 112 110 107 91 89 28 19 17 14 8 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGAACAATTTATGAATTCTGAT</pcr_primer_p1>
		<pcr_primer_p2>TATTTTCAGATGTTTGCTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGGAACAATTTATGAATTCTGATTAACAGTAGAAATGAAGGAGACTAACTATAGTTTCTTTAGACTAAATCTCTTATTCTATCTCACCAAAGCTGACATAAATACTCAAATAAAACATCCTCATTCGGATTGTTTGAGAGTCAAGTTTGAGAGATAGAAAGCATATTTTTGAATAAATTAAGAACTGGATGAAGGGACACTTCCGAAACTGTTGATGCCAAATGGAAACGCTGAAGCAAACATCTGAAAATA</canonical_amplicon>
		<polymorphic_amplicon>GGGAACAATTTATGAATTCTGATTAACAGTAGAAATGAAGGAGACTAACTATAGTTTCTTTAGACTAAATCTCTTATTCTATCTCMCCAAAGCTGACATAAATACTCAAATAAAACATCCTCATTCGGATTGTTTGAGAGTCAAGTTTGAGAGATAGAAAGCATATTTTTGAATAAATTAAGAACTGGATGAAGGGACACTTCCGAAACTGTTGATGCCAAATGGAAACGCTGAAGCAAACATCTGAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36770</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>509111</contig_pos>
        <strand>+</strand>
        <context>CAAATAAAAC[A/C]TCCTCATTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATCTCTTATTCTATCTCACCAAAGCTGACATAAATACTCAAATAAAAC</left_flank>
        <right_flank>TCCTCATTCGGATTGTTTGAGAGTCAAGTTTGAGAGATAGAAAGCATATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACAAGAACAAAAAAAAGAAGTCGGACATGAGGTACAAAGGGTTGAGGGCCGGTAGACAGGTCTTGTGATAAAGTTTTATGAATATTGAAAACTTTTGACTTAAAAATTTAGAAGAATAAGAAAAGCGAAGAATGAAAATCAGAAGAACTGGCGATAACTATTTTTATTGGTTTAGTGGTATGATTCGCATTCAAATAAATTATAAAGAAAAAGAATTTTCTTTAGATAGATTTATTCTGACTTTAGATAGATTTATTCTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCGTATAATTAGGAGAGGTAACGAATATCATTAACAATACATTAAAAAAGGGAACAATTTATGAATTCTGATTAACAGTAGAAATGAAGGAGACTAACTATAGTTTCTTTAGACTAAATCTCTTATTCTATCTCACCAAAGCTGACATAAATACTCAAATAAAACATCCTCATTCGGATTGTTTGAGAGTCAAGTTTGAGAGATAGAAAGCATATTTTTGAATAAATTAAGAACTGGATGAAGGGACACTTCCGAAACTGTTGATGCCAAATGGAAACGCTGAAGCAAACATCTGAAAATAAGAAGAATCTTACCAGTTAAAGAAAATTATACAGTGTTTATATAATTCATGTGATAATTGGAGTAGAACGTGTTAAATCAACAACATCCCTATTAAAAGTATTGTTTGTTAAAGGAGAACTCCGACCAAAAATTTTTATTGCATTAAAATGTTCGCAACGTTGTCTATTTTCCCAATATTATCACGAGAAAATTCGAAAAAAATCCGAAATCCCCGAAAAATGCCGTTAAAAGCGAAAAAATTTCAAAAAAAGTTGCTAGGAGGGACGAGGATTTGAATTTCCGCGCAGTGAGAAACCTCGGCCACGGAGCCTGATAGCCGTTTTTTCAAGTGGCCGACAGTGGTTTTTACGTTTTCTTTCTGCC</canonical>
            <polymorphic>TACAAGAACAAAAAAAAGAAGTCGGACATGAGGTACAAAGGGTTGAGGGCCGGTAGACAGGTCTTGTGATAAAGTTTTATGAATATTGAAAACTTTTGACTTAAAAATTTAGAAGAATAAGAAAAGCGAAGAATGAAAATCAGAAGAACTGGCGATAACTATTTTTATTGGTTTAGTGGTATGATTCGCATTCAAATAAATTATAAAGAAAAAGAATTTTCTTTAGATAGATTTATTCTGACTTTAGATAGATTTATTCTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCGTATAATTAGGAGAGGTAACGAATATCATTAACAATACATTAAAAAAGGGAACAATTTATGAATTCTGATTAACAGTAGAAATGAAGGAGACTAACTATAGTTTCTTTAGACTAAATCTCTTATTCTATCTCACCAAAGCTGACATAAATACTCAAATAAAACMTCCTCATTCGGATTGTTTGAGAGTCAAGTTTGAGAGATAGAAAGCATATTTTTGAATAAATTAAGAACTGGATGAAGGGACACTTCCGAAACTGTTGATGCCAAATGGAAACGCTGAAGCAAACATCTGAAAATAAGAAGAATCTTACCAGTTAAAGAAAATTATACAGTGTTTATATAATTCATGTGATAATTGGAGTAGAACGTGTTAAATCAACAACATCCCTATTAAAAGTATTGTTTGTTAAAGGAGAACTCCGACCAAAAATTTTTATTGCATTAAAATGTTCGCAACGTTGTCTATTTTCCCAATATTATCACGAGAAAATTCGAAAAAAATCCGAAATCCCCGAAAAATGCCGTTAAAAGCGAAAAAATTTCAAAAAAAGTTGCTAGGAGGGACGAGGATTTGAATTTCCGCGCAGTGAGAAACCTCGGCCACGGAGCCTGATAGCCGTTTTTTCAAGTGGCCGACAGTGGTTTTTACGTTTTCTTTCTGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGAACAATTTATGAATTCTGAT</pcr_primer_p1>
		<pcr_primer_p2>TATTTTCAGATGTTTGCTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGGAACAATTTATGAATTCTGATTAACAGTAGAAATGAAGGAGACTAACTATAGTTTCTTTAGACTAAATCTCTTATTCTATCTCACCAAAGCTGACATAAATACTCAAATAAAACATCCTCATTCGGATTGTTTGAGAGTCAAGTTTGAGAGATAGAAAGCATATTTTTGAATAAATTAAGAACTGGATGAAGGGACACTTCCGAAACTGTTGATGCCAAATGGAAACGCTGAAGCAAACATCTGAAAATA</canonical_amplicon>
		<polymorphic_amplicon>GGGAACAATTTATGAATTCTGATTAACAGTAGAAATGAAGGAGACTAACTATAGTTTCTTTAGACTAAATCTCTTATTCTATCTCACCAAAGCTGACATAAATACTCAAATAAAACMTCCTCATTCGGATTGTTTGAGAGTCAAGTTTGAGAGATAGAAAGCATATTTTTGAATAAATTAAGAACTGGATGAAGGGACACTTCCGAAACTGTTGATGCCAAATGGAAACGCTGAAGCAAACATCTGAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36771</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>519405</contig_pos>
        <strand>+</strand>
        <context>TGGGAAACGC[A/T]AAAAAAAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTCTTGTTTCTTTTTTGAACCTAATGTATGCAAAGAAAATGGGAAACGC</left_flank>
        <right_flank>AAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACACTTTTGAAAAGGCTAAGAACACTGTCGCATCGGCTTGCACCACCGTCAAGAACGTTGTCTCCCTCTGGAAAACCTAATTTGTACCATAAACCCCAATTTCTATCCTTTAAAGAGTTGGATAATGTGGAAATATGTTCTATTCTTTTTTTACATCTTGTGAGATATCACATTTTTTCATAAAATCTAACCAAAAAAATTTCCCATTTTTTCTTCTCATTTAAATGTTTTTTCCCATCCGCTTCTTCTATTTCTCCTCTATATTTGATGATCCACGATTTGATTTCTATCACTTTTATTTTTTTCTCTCTTCCTGTAGTTGACCTATTATTCCTTCTAACTTTTTCCTGACCCTAATTACCTACTTAGGGGGCCATTATGACCTCAAGGTTTTCAATGACCCCTTCGTTGAGCAATGATCATCAACTAGACACAGCTTCTGTTTTTTCTCTTGTTTCTTTTTTGAACCTAATGTATGCAAAGAAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTTTCAGAAAAAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAAGAATAAATAATCTTAAAAGCAATTAAGGTAGCAAATGAAAGAGATCTAGCATTGGTCGGAGAGTGAAGTAGGCGTGGAGAAAGTGAAATGAGCAAGTTTCGATAAATTTACAGCATTA</canonical>
            <polymorphic>CGACACTTTTGAAAAGGCTAAGAACACTGTCGCATCGGCTTGCACCACCGTCAAGAACGTTGTCTCCCTCTGGAAAACCTAATTTGTACCATAAACCCCAATTTCTATCCTTTAAAGAGTTGGATAATGTGGAAATATGTTCTATTCTTTTTTTACATCTTGTGAGATATCACATTTTTTCATAAAATCTAACCAAAAAAATTTCCCATTTTTTCTTCTCATTTAAATGTTTTTTCCCATCCGCTTCTTCTATTTCTCCTCTATATTTGATGATCCACGATTTGATTTCTATCACTTTTATTTTTTTCTCTCTTCCTGTAGTTGACCTATTATTCCTTCTAACTTTTTCCTGACCCTAATTACCTACTTAGGGGGCCATTATGACCTCAAGGTTTTCAATGACCCCTTCGTTGAGCAATGATCATCAACTAGACACAGCTTCTGTTTTTTCTCTTGTTTCTTTTTTGAACCTAATGTATGCAAAGAAAATGGGAAACGCWAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTTTCAGAAAAAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAAGAATAAATAATCTTAAAAGCAATTAAGGTAGCAAATGAAAGAGATCTAGCATTGGTCGGAGAGTGAAGTAGGCGTGGAGAAAGTGAAATGAGCAAGTTTCGATAAATTTACAGCATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCTCTTCCTGTAGTTGACCT</pcr_primer_p1>
		<pcr_primer_p2>AAATCGAACAAGTGCAAGAC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TCTCTCTTCCTGTAGTTGACCTATTATTCCTTCTAACTTTTTCCTGACCCTAATTACCTACTTAGGGGGCCATTATGACCTCAAGGTTTTCAATGACCCCTTCGTTGAGCAATGATCATCAACTAGACACAGCTTCTGTTTTTTCTCTTGTTTCTTTTTTGAACCTAATGTATGCAAAGAAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTT</canonical_amplicon>
		<polymorphic_amplicon>TCTCTCTTCCTGTAGTTGACCTATTATTCCTTCTAACTTTTTCCTGACCCTAATTACCTACTTAGGGGGCCATTATGACCTCAAGGTTTTCAATGACCCCTTCGTTGAGCAATGATCATCAACTAGACACAGCTTCTGTTTTTTCTCTTGTTTCTTTTTTGAACCTAATGTATGCAAAGAAAATGGGAAACGCWAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36772</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>519558</contig_pos>
        <strand>+</strand>
        <context>TCTGTACTYY[C/T]TGACCACATC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCC</left_flank>
        <right_flank>TGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACATCTTGTGAGATATCACATTTTTTCATAAAATCTAACCAAAAAAATTTCCCATTTTTTCTTCTCATTTAAATGTTTTTTCCCATCCGCTTCTTCTATTTCTCCTCTATATTTGATGATCCACGATTTGATTTCTATCACTTTTATTTTTTTCTCTCTTCCTGTAGTTGACCTATTATTCCTTCTAACTTTTTCCTGACCCTAATTACCTACTTAGGGGGCCATTATGACCTCAAGGTTTTCAATGACCCCTTCGTTGAGCAATGATCATCAACTAGACACAGCTTCTGTTTTTTCTCTTGTTTCTTTTTTGAACCTAATGTATGCAAAGAAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTTTCAGAAAAAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAAGAATAAATAATCTTAAAAGCAATTAAGGTAGCAAATGAAAGAGATCTAGCATTGGTCGGAGAGTGAAGTAGGCGTGGAGAAAGTGAAATGAGCAAGTTTCGATAAATTTACAGCATTATTATAAGGCTAAAGAAACATACTACAGCTATTCAAGCAGATGGTAGATATCGATCGTCGTCAGCTCTTTGCAGAATCAGTGTCTCTCTGGCCAATCGTATTTGGCGCTGACGTTCGGCACGTTTTTGTCGTAATCGTTTTCCACCGAGGACAA</canonical>
            <polymorphic>TACATCTTGTGAGATATCACATTTTTTCATAAAATCTAACCAAAAAAATTTCCCATTTTTTCTTCTCATTTAAATGTTTTTTCCCATCCGCTTCTTCTATTTCTCCTCTATATTTGATGATCCACGATTTGATTTCTATCACTTTTATTTTTTTCTCTCTTCCTGTAGTTGACCTATTATTCCTTCTAACTTTTTCCTGACCCTAATTACCTACTTAGGGGGCCATTATGACCTCAAGGTTTTCAATGACCCCTTCGTTGAGCAATGATCATCAACTAGACACAGCTTCTGTTTTTTCTCTTGTTTCTTTTTTGAACCTAATGTATGCAAAGAAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTTTCAGAAAAAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCYTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAAGAATAAATAATCTTAAAAGCAATTAAGGTAGCAAATGAAAGAGATCTAGCATTGGTCGGAGAGTGAAGTAGGCGTGGAGAAAGTGAAATGAGCAAGTTTCGATAAATTTACAGCATTATTATAAGGCTAAAGAAACATACTACAGCTATTCAAGCAGATGGTAGATATCGATCGTCGTCAGCTCTTTGCAGAATCAGTGTCTCTCTGGCCAATCGTATTTGGCGCTGACGTTCGGCACGTTTTTGTCGTAATCGTTTTCCACCGAGGACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>141 120 114 107 105 101 75 67 38 38 24 17 11 11 10 9 8 4</canonical_bands>
                <polymorphic_bands>141 120 114 111 105 101 75 67 38 38 24 17 11 11 10 9 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATCATTGTATTTCAACCCTCT</pcr_primer_p1>
		<pcr_primer_p2>TTTACATTTTCCCAGTTTCACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAA</canonical_amplicon>
		<polymorphic_amplicon>CATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCYTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36773</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>519573</contig_pos>
        <strand>+</strand>
        <context>CACATCCAAR[A/G]GACCCAGCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAG</left_flank>
        <right_flank>GACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCACATTTTTTCATAAAATCTAACCAAAAAAATTTCCCATTTTTTCTTCTCATTTAAATGTTTTTTCCCATCCGCTTCTTCTATTTCTCCTCTATATTTGATGATCCACGATTTGATTTCTATCACTTTTATTTTTTTCTCTCTTCCTGTAGTTGACCTATTATTCCTTCTAACTTTTTCCTGACCCTAATTACCTACTTAGGGGGCCATTATGACCTCAAGGTTTTCAATGACCCCTTCGTTGAGCAATGATCATCAACTAGACACAGCTTCTGTTTTTTCTCTTGTTTCTTTTTTGAACCTAATGTATGCAAAGAAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTTTCAGAAAAAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAAGAATAAATAATCTTAAAAGCAATTAAGGTAGCAAATGAAAGAGATCTAGCATTGGTCGGAGAGTGAAGTAGGCGTGGAGAAAGTGAAATGAGCAAGTTTCGATAAATTTACAGCATTATTATAAGGCTAAAGAAACATACTACAGCTATTCAAGCAGATGGTAGATATCGATCGTCGTCAGCTCTTTGCAGAATCAGTGTCTCTCTGGCCAATCGTATTTGGCGCTGACGTTCGGCACGTTTTTGTCGTAATCGTTTTCCACCGAGGACAAGCATCACCAAGGTCA</canonical>
            <polymorphic>ATCACATTTTTTCATAAAATCTAACCAAAAAAATTTCCCATTTTTTCTTCTCATTTAAATGTTTTTTCCCATCCGCTTCTTCTATTTCTCCTCTATATTTGATGATCCACGATTTGATTTCTATCACTTTTATTTTTTTCTCTCTTCCTGTAGTTGACCTATTATTCCTTCTAACTTTTTCCTGACCCTAATTACCTACTTAGGGGGCCATTATGACCTCAAGGTTTTCAATGACCCCTTCGTTGAGCAATGATCATCAACTAGACACAGCTTCTGTTTTTTCTCTTGTTTCTTTTTTGAACCTAATGTATGCAAAGAAAATGGGAAACGCAAAAAAAAACACAAGAGTTCTAAGAACTCAATTTTCAAAGCGTCTTGCACTTGTTCGATTTTCAGAAAAAACATTTTTTTAATCTTAATTTTCTTACATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGRGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAAAATATTACCCGTTAGGTATCTAGTATTTGACTGAAAAGAATAAATAATCTTAAAAGCAATTAAGGTAGCAAATGAAAGAGATCTAGCATTGGTCGGAGAGTGAAGTAGGCGTGGAGAAAGTGAAATGAGCAAGTTTCGATAAATTTACAGCATTATTATAAGGCTAAAGAAACATACTACAGCTATTCAAGCAGATGGTAGATATCGATCGTCGTCAGCTCTTTGCAGAATCAGTGTCTCTCTGGCCAATCGTATTTGGCGCTGACGTTCGGCACGTTTTTGTCGTAATCGTTTTCCACCGAGGACAAGCATCACCAAGGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCATTGTATTTCAACCCTCT</pcr_primer_p1>
		<pcr_primer_p2>TTTACATTTTCCCAGTTTCACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGCGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAA</canonical_amplicon>
		<polymorphic_amplicon>CATCATTGTATTTCAACCCTCTCATTTGCAAATTTTGTTTCAACTCTTCTGTACTCCGTGACCACATCCAAGRGACCCAGCTCTGAAACCATCAGTTTTTATGTACATCTTCCTGTTTTTCAAATGTTTCACAAGCTATTTTTGTACTCTGGAGTTCATTTTTTCAAAATTTGTTCCATCTATTTTGGAAATTAATTTATTTGGGAAAAAAATTCGGAAATAAAGGACAGTGAAACTGGGAAAATGTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36774</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>523115</contig_pos>
        <strand></strand>
        <context>aggtctgttt[C/T]acactctcca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAGCTTCCAAAATTTCTGTGAATGCAATGTTTTTTATTCAGGTCTGTTT</left_flank>
        <right_flank>ACACTCTCCAAAACTTGCAAATAGATCAAAACCTTGACAGCCAAGTTCCG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTCTGATTACAGAACATTGTGTTCCAGTCTTGTGCGCATGAGCATGGTGAATTGAAAATTGGATCTGATCGTTGAAAGGTTTCCAGTGGACGGTGTACATAGTAATCTGAAAATCAAAATAGAAATGGTTTTCTTTATTAATGTTACCATTCATTTCCTAAACTACAGTACCTGCCAATAAAATTTACAGCAACCTAGTTATCAGTTAGTTTTCAGCTATTTTGATCATTTTCTGGAATCTGTAGTTCGGCTGTCCAATTTAGGAACACTAAAAAAATTTCGGTGGGTGCAAAACATACCTAGATTGAAAACATTGTTTTACAGAATTTTTTTTTTAGTTTTTCAGCTATTTGCCGATTTCGGAAAAGACACCTCTTTTCGGCTCGTTTTGTACTGAAACCTGAAAAAACAAGTGTCTCTCGGAAATCGACTAATAGCCGAAAAACCAAGAGCTTCCAAAATTTCTGTGAATGCAATGTTTTTTATTCAGGTCTGTTTCACACTCTCCAAAACTTGCAAATAGATCAAAACCTTGACAGCCAAGTTCCGGATTCCTGAGGATGATAAAAATGACCGAAAATGAACAGAAATTATCTTTTCGTATATATTATTAACCGGTACTGTATTTCTGTTTTCTGAACTTGATGGTGTGAAGTTACCGTAATTGGAAAAATAAAAGACTACCCAAGCAGTCAACTTTGATCCCAATTATCTCGATTACTGAAAAAGATATTAGAAATTTGTTAACTGATAACATATTGATGAAATCATGATAAATAATTTATCACTTGGTACATTTTTGATAACATTAACAGGGATCGCGTGGACTGAGCTCAAATTTAACAGTTTGGGTGAAGGCTATTGAAGCAAATAAACTCAATAGTTCCATACTTAATGAACAGATATAACATCATCATGCCTATTAAAAAAAATATCCGTTCCTTGTTCAAGGAACATGAAGGTTACTGAACCTTCAATAATTCACCGGATATACCACGT</canonical>
            <polymorphic>CGTCTGATTACAGAACATTGTGTTCCAGTCTTGTGCGCATGAGCATGGTGAATTGAAAATTGGATCTGATCGTTGAAAGGTTTCCAGTGGACGGTGTACATAGTAATCTGAAAATCAAAATAGAAATGGTTTTCTTTATTAATGTTACCATTCATTTCCTAAACTACAGTACCTGCCAATAAAATTTACAGCAACCTAGTTATCAGTTAGTTTTCAGCTATTTTGATCATTTTCTGGAATCTGTAGTTCGGCTGTCCAATTTAGGAACACTAAAAAAATTTCGGTGGGTGCAAAACATACCTAGATTGAAAACATTGTTTTACAGAATTTTTTTTTTAGTTTTTCAGCTATTTGCCGATTTCGGAAAAGACACCTCTTTTCGGCTCGTTTTGTACTGAAACCTGAAAAAACAAGTGTCTCTCGGAAATCGACTAATAGCCGAAAAACCAAGAGCTTCCAAAATTTCTGTGAATGCAATGTTTTTTATTCAGGTCTGTTTYACACTCTCCAAAACTTGCAAATAGATCAAAACCTTGACAGCCAAGTTCCGGATTCCTGAGGATGATAAAAATGACCGAAAATGAACAGAAATTATCTTTTCGTATATATTATTAACCGGTACTGTATTTCTGTTTTCTGAACTTGATGGTGTGAAGTTACCGTAATTGGAAAAATAAAAGACTACCCAAGCAGTCAACTTTGATCCCAATTATCTCGATTACTGAAAAAGATATTAGAAATTTGTTAACTGATAACATATTGATGAAATCATGATAAATAATTTATCACTTGGTACATTTTTGATAACATTAACAGGGATCGCGTGGACTGAGCTCAAATTTAACAGTTTGGGTGAAGGCTATTGAAGCAAATAAACTCAATAGTTCCATACTTAATGAACAGATATAACATCATCATGCCTATTAAAAAAAATATCCGTTCCTTGTTCAAGGAACATGAAGGTTACTGAACCTTCAATAATTCACCGGATATACCACGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>173 148 135 130 82 54 44 39 38 31 29 22 17 15 13 12 7 4 3 2 2</canonical_bands>
                <polymorphic_bands>173 148 135 130 82 54 44 39 38 33 29 22 17 15 13 12 7 4 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAATGTTACCATTCATTTCCTAA</pcr_primer_p1>
		<pcr_primer_p2>CATCAAGTTCAGAAAACAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>510</pcr_amplicon_size>
		<canonical_amplicon>TTAATGTTACCATTCATTTCCTAAACTACAGTACCTGCCAATAAAATTTACAGCAACCTAGTTATCAGTTAGTTTTCAGCTATTTTGATCATTTTCTGGAATCTGTAGTTCGGCTGTCCAATTTAGGAACACTAAAAAAATTTCGGTGGGTGCAAAACATACCTAGATTGAAAACATTGTTTTACAGAATTTTTTTTTTAGTTTTTCAGCTATTTGCCGATTTCGGAAAAGACACCTCTTTTCGGCTCGTTTTGTACTGAAACCTGAAAAAACAAGTGTCTCTCGGAAATCGACTAATAGCCGAAAAACCAAGAGCTTCCAAAATTTCTGTGAATGCAATGTTTTTTATTCAGGTCTGTTTCACACTCTCCAAAACTTGCAAATAGATCAAAACCTTGACAGCCAAGTTCCGGATTCCTGAGGATGATAAAAATGACCGAAAATGAACAGAAATTATCTTTTCGTATATATTATTAACCGGTACTGTATTTCTGTTTTCTGAACTTGATG</canonical_amplicon>
		<polymorphic_amplicon>TTAATGTTACCATTCATTTCCTAAACTACAGTACCTGCCAATAAAATTTACAGCAACCTAGTTATCAGTTAGTTTTCAGCTATTTTGATCATTTTCTGGAATCTGTAGTTCGGCTGTCCAATTTAGGAACACTAAAAAAATTTCGGTGGGTGCAAAACATACCTAGATTGAAAACATTGTTTTACAGAATTTTTTTTTTAGTTTTTCAGCTATTTGCCGATTTCGGAAAAGACACCTCTTTTCGGCTCGTTTTGTACTGAAACCTGAAAAAACAAGTGTCTCTCGGAAATCGACTAATAGCCGAAAAACCAAGAGCTTCCAAAATTTCTGTGAATGCAATGTTTTTTATTCAGGTCTGTTTYACACTCTCCAAAACTTGCAAATAGATCAAAACCTTGACAGCCAAGTTCCGGATTCCTGAGGATGATAAAAATGACCGAAAATGAACAGAAATTATCTTTTCGTATATATTATTAACCGGTACTGTATTTCTGTTTTCTGAACTTGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36775</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>523212</contig_pos>
        <strand></strand>
        <context>agaaattatc[T/A]tttcgtatat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCCGGATTCCTGAGGATGATAAAAATGACCGAAAATGAACAGAAATTATC</left_flank>
        <right_flank>TTTCGTATATATTATTAACCGGTACTGTATTTCTGTTTTCTGAACTTGAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATAGTAATCTGAAAATCAAAATAGAAATGGTTTTCTTTATTAATGTTACCATTCATTTCCTAAACTACAGTACCTGCCAATAAAATTTACAGCAACCTAGTTATCAGTTAGTTTTCAGCTATTTTGATCATTTTCTGGAATCTGTAGTTCGGCTGTCCAATTTAGGAACACTAAAAAAATTTCGGTGGGTGCAAAACATACCTAGATTGAAAACATTGTTTTACAGAATTTTTTTTTTAGTTTTTCAGCTATTTGCCGATTTCGGAAAAGACACCTCTTTTCGGCTCGTTTTGTACTGAAACCTGAAAAAACAAGTGTCTCTCGGAAATCGACTAATAGCCGAAAAACCAAGAGCTTCCAAAATTTCTGTGAATGCAATGTTTTTTATTCAGGTCTGTTTCACACTCTCCAAAACTTGCAAATAGATCAAAACCTTGACAGCCAAGTTCCGGATTCCTGAGGATGATAAAAATGACCGAAAATGAACAGAAATTATCTTTTCGTATATATTATTAACCGGTACTGTATTTCTGTTTTCTGAACTTGATGGTGTGAAGTTACCGTAATTGGAAAAATAAAAGACTACCCAAGCAGTCAACTTTGATCCCAATTATCTCGATTACTGAAAAAGATATTAGAAATTTGTTAACTGATAACATATTGATGAAATCATGATAAATAATTTATCACTTGGTACATTTTTGATAACATTAACAGGGATCGCGTGGACTGAGCTCAAATTTAACAGTTTGGGTGAAGGCTATTGAAGCAAATAAACTCAATAGTTCCATACTTAATGAACAGATATAACATCATCATGCCTATTAAAAAAAATATCCGTTCCTTGTTCAAGGAACATGAAGGTTACTGAACCTTCAATAATTCACCGGATATACCACGTCGCTTGAACTTCCACCTAGATCAGTATAACCTTATAAACCTCCCCCCACAACAAAATATTCTTTATTTTTTTAAAGCCTTTTAATATTTCAAAATAT</canonical>
            <polymorphic>ACATAGTAATCTGAAAATCAAAATAGAAATGGTTTTCTTTATTAATGTTACCATTCATTTCCTAAACTACAGTACCTGCCAATAAAATTTACAGCAACCTAGTTATCAGTTAGTTTTCAGCTATTTTGATCATTTTCTGGAATCTGTAGTTCGGCTGTCCAATTTAGGAACACTAAAAAAATTTCGGTGGGTGCAAAACATACCTAGATTGAAAACATTGTTTTACAGAATTTTTTTTTTAGTTTTTCAGCTATTTGCCGATTTCGGAAAAGACACCTCTTTTCGGCTCGTTTTGTACTGAAACCTGAAAAAACAAGTGTCTCTCGGAAATCGACTAATAGCCGAAAAACCAAGAGCTTCCAAAATTTCTGTGAATGCAATGTTTTTTATTCAGGTCTGTTTCACACTCTCCAAAACTTGCAAATAGATCAAAACCTTGACAGCCAAGTTCCGGATTCCTGAGGATGATAAAAATGACCGAAAATGAACAGAAATTATCWTTTCGTATATATTATTAACCGGTACTGTATTTCTGTTTTCTGAACTTGATGGTGTGAAGTTACCGTAATTGGAAAAATAAAAGACTACCCAAGCAGTCAACTTTGATCCCAATTATCTCGATTACTGAAAAAGATATTAGAAATTTGTTAACTGATAACATATTGATGAAATCATGATAAATAATTTATCACTTGGTACATTTTTGATAACATTAACAGGGATCGCGTGGACTGAGCTCAAATTTAACAGTTTGGGTGAAGGCTATTGAAGCAAATAAACTCAATAGTTCCATACTTAATGAACAGATATAACATCATCATGCCTATTAAAAAAAATATCCGTTCCTTGTTCAAGGAACATGAAGGTTACTGAACCTTCAATAATTCACCGGATATACCACGTCGCTTGAACTTCCACCTAGATCAGTATAACCTTATAAACCTCCCCCCACAACAAAATATTCTTTATTTTTTTAAAGCCTTTTAATATTTCAAAATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGTTACCATTCATTTCCTAAA</pcr_primer_p1>
		<pcr_primer_p2>ACCATCAAGTTCAGAAAACAG</pcr_primer_p2>
		<pcr_amplicon_size>510</pcr_amplicon_size>
		<canonical_amplicon>AATGTTACCATTCATTTCCTAAACTACAGTACCTGCCAATAAAATTTACAGCAACCTAGTTATCAGTTAGTTTTCAGCTATTTTGATCATTTTCTGGAATCTGTAGTTCGGCTGTCCAATTTAGGAACACTAAAAAAATTTCGGTGGGTGCAAAACATACCTAGATTGAAAACATTGTTTTACAGAATTTTTTTTTTAGTTTTTCAGCTATTTGCCGATTTCGGAAAAGACACCTCTTTTCGGCTCGTTTTGTACTGAAACCTGAAAAAACAAGTGTCTCTCGGAAATCGACTAATAGCCGAAAAACCAAGAGCTTCCAAAATTTCTGTGAATGCAATGTTTTTTATTCAGGTCTGTTTCACACTCTCCAAAACTTGCAAATAGATCAAAACCTTGACAGCCAAGTTCCGGATTCCTGAGGATGATAAAAATGACCGAAAATGAACAGAAATTATCTTTTCGTATATATTATTAACCGGTACTGTATTTCTGTTTTCTGAACTTGATGGT</canonical_amplicon>
		<polymorphic_amplicon>AATGTTACCATTCATTTCCTAAACTACAGTACCTGCCAATAAAATTTACAGCAACCTAGTTATCAGTTAGTTTTCAGCTATTTTGATCATTTTCTGGAATCTGTAGTTCGGCTGTCCAATTTAGGAACACTAAAAAAATTTCGGTGGGTGCAAAACATACCTAGATTGAAAACATTGTTTTACAGAATTTTTTTTTTAGTTTTTCAGCTATTTGCCGATTTCGGAAAAGACACCTCTTTTCGGCTCGTTTTGTACTGAAACCTGAAAAAACAAGTGTCTCTCGGAAATCGACTAATAGCCGAAAAACCAAGAGCTTCCAAAATTTCTGTGAATGCAATGTTTTTTATTCAGGTCTGTTTCACACTCTCCAAAACTTGCAAATAGATCAAAACCTTGACAGCCAAGTTCCGGATTCCTGAGGATGATAAAAATGACCGAAAATGAACAGAAATTATCWTTTCGTATATATTATTAACCGGTACTGTATTTCTGTTTTCTGAACTTGATGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36776</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>525550</contig_pos>
        <strand>+</strand>
        <context>CGAACTTCGT[G/T]TGGAATACCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACGAAAAAAAGGTCCAAATTTTTGAAATTTTCGGAATTTCGAACTTCGT</left_flank>
        <right_flank>TGGAATACCCCCAAATTCTTCTTAACATTATTCAAATAATATTCTGATTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACGGCAATTCCGGTAAAAAAGAGAGGTAGATGGTGGAATATAAAAGACAACGTTTATGATCCTATCAAGGTAGATGGAGATTTTTCTATTGAACAAAAAGCTTCATGAACCGAATAGAGCTATAATTTTTGCAGCGAATACCAACCTGAGAGCATATTCATAAATATTTTGCTTGAAAAGTCATTTTCTTTTTAAAAATCAACTGAATTATTTTCCAGAAGGGAAGAGAAGTGTGAAAATGAACCAGGAATGTTTGAAATGACCTCGTAATGTCGAAAATTCGGATTTTTAAAATTTCGGAGTTTCGGAACTTAGAAATTTCCCGATTTCAAAATGTTCGGAATTTCGGAAATTTCGGAAATTTTAAAATTCAAATTAAAAAGTATAATTCCATTTTTCCATTACAAAAACGTCAAAAACTGGTGACAATTAAAAGAAGGACTTCGAAAACGAAAAAAAGGTCCAAATTTTTGAAATTTTCGGAATTTCGAACTTCGTGTGGAATACCCCCAAATTCTTCTTAACATTATTCAAATAATATTCTGATTCACATGGTCAGAAAATGATTTTCAACTAACTTTTCTCGAAAACTACAGAATGAAACATACTGATTTCCGGATAAAATAAAATTCCTAACTTTATCTATTTATGTCATATCTATCAGAAACAAAGTTTTTGAGTTGAACAGCAGCAAACATCAGGTTTTAAGTTAGATATTAATGCCCTTATTTAATCATCATACTACTTTTTTAGAATTAGAAAATTTGTAAAATTGAGGTTCTTCGTATAACGGATAAAGGACCCCTAATAAAAGGATTTTCTAAAAAACTATTTATCTTCAATTTTCACGTTTTTTAAGTTGATTTCTGGGAAAAAAGGTAAATGTTCATAAAAATGAGCTCTGAACATGTTCAGGTAGCTTTTTAGAAGAATATGAAATTTCACAACACCTCGTCTAGAGTCACTATTTGTTCCGGTTCTACAACCCACTCCTTTGAA</canonical>
            <polymorphic>GACGGCAATTCCGGTAAAAAAGAGAGGTAGATGGTGGAATATAAAAGACAACGTTTATGATCCTATCAAGGTAGATGGAGATTTTTCTATTGAACAAAAAGCTTCATGAACCGAATAGAGCTATAATTTTTGCAGCGAATACCAACCTGAGAGCATATTCATAAATATTTTGCTTGAAAAGTCATTTTCTTTTTAAAAATCAACTGAATTATTTTCCAGAAGGGAAGAGAAGTGTGAAAATGAACCAGGAATGTTTGAAATGACCTCGTAATGTCGAAAATTCGGATTTTTAAAATTTCGGAGTTTCGGAACTTAGAAATTTCCCGATTTCAAAATGTTCGGAATTTCGGAAATTTCGGAAATTTTAAAATTCAAATTAAAAAGTATAATTCCATTTTTCCATTACAAAAACGTCAAAAACTGGTGACAATTAAAAGAAGGACTTCGAAAACGAAAAAAAGGTCCAAATTTTTGAAATTTTCGGAATTTCGAACTTCGTKTGGAATACCCCCAAATTCTTCTTAACATTATTCAAATAATATTCTGATTCACATGGTCAGAAAATGATTTTCAACTAACTTTTCTCGAAAACTACAGAATGAAACATACTGATTTCCGGATAAAATAAAATTCCTAACTTTATCTATTTATGTCATATCTATCAGAAACAAAGTTTTTGAGTTGAACAGCAGCAAACATCAGGTTTTAAGTTAGATATTAATGCCCTTATTTAATCATCATACTACTTTTTTAGAATTAGAAAATTTGTAAAATTGAGGTTCTTCGTATAACGGATAAAGGACCCCTAATAAAAGGATTTTCTAAAAAACTATTTATCTTCAATTTTCACGTTTTTTAAGTTGATTTCTGGGAAAAAAGGTAAATGTTCATAAAAATGAGCTCTGAACATGTTCAGGTAGCTTTTTAGAAGAATATGAAATTTCACAACACCTCGTCTAGAGTCACTATTTGTTCCGGTTCTACAACCCACTCCTTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>298 198 190 96 74 49 36 25 15 10 5 2 2</canonical_bands>
                <polymorphic_bands>298 198 190 125 96 36 25 15 10 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATAATTTTTGCAGCGAATACC</pcr_primer_p1>
		<pcr_primer_p2>TCTTCTAAAAAGCTACCTGAACA</pcr_primer_p2>
		<pcr_amplicon_size>811</pcr_amplicon_size>
		<canonical_amplicon>TATAATTTTTGCAGCGAATACCAACCTGAGAGCATATTCATAAATATTTTGCTTGAAAAGTCATTTTCTTTTTAAAAATCAACTGAATTATTTTCCAGAAGGGAAGAGAAGTGTGAAAATGAACCAGGAATGTTTGAAATGACCTCGTAATGTCGAAAATTCGGATTTTTAAAATTTCGGAGTTTCGGAACTTAGAAATTTCCCGATTTCAAAATGTTCGGAATTTCGGAAATTTCGGAAATTTTAAAATTCAAATTAAAAAGTATAATTCCATTTTTCCATTACAAAAACGTCAAAAACTGGTGACAATTAAAAGAAGGACTTCGAAAACGAAAAAAAGGTCCAAATTTTTGAAATTTTCGGAATTTCGAACTTCGTGTGGAATACCCCCAAATTCTTCTTAACATTATTCAAATAATATTCTGATTCACATGGTCAGAAAATGATTTTCAACTAACTTTTCTCGAAAACTACAGAATGAAACATACTGATTTCCGGATAAAATAAAATTCCTAACTTTATCTATTTATGTCATATCTATCAGAAACAAAGTTTTTGAGTTGAACAGCAGCAAACATCAGGTTTTAAGTTAGATATTAATGCCCTTATTTAATCATCATACTACTTTTTTAGAATTAGAAAATTTGTAAAATTGAGGTTCTTCGTATAACGGATAAAGGACCCCTAATAAAAGGATTTTCTAAAAAACTATTTATCTTCAATTTTCACGTTTTTTAAGTTGATTTCTGGGAAAAAAGGTAAATGTTCATAAAAATGAGCTCTGAACATGTTCAGGTAGCTTTTTAGAAGA</canonical_amplicon>
		<polymorphic_amplicon>TATAATTTTTGCAGCGAATACCAACCTGAGAGCATATTCATAAATATTTTGCTTGAAAAGTCATTTTCTTTTTAAAAATCAACTGAATTATTTTCCAGAAGGGAAGAGAAGTGTGAAAATGAACCAGGAATGTTTGAAATGACCTCGTAATGTCGAAAATTCGGATTTTTAAAATTTCGGAGTTTCGGAACTTAGAAATTTCCCGATTTCAAAATGTTCGGAATTTCGGAAATTTCGGAAATTTTAAAATTCAAATTAAAAAGTATAATTCCATTTTTCCATTACAAAAACGTCAAAAACTGGTGACAATTAAAAGAAGGACTTCGAAAACGAAAAAAAGGTCCAAATTTTTGAAATTTTCGGAATTTCGAACTTCGTKTGGAATACCCCCAAATTCTTCTTAACATTATTCAAATAATATTCTGATTCACATGGTCAGAAAATGATTTTCAACTAACTTTTCTCGAAAACTACAGAATGAAACATACTGATTTCCGGATAAAATAAAATTCCTAACTTTATCTATTTATGTCATATCTATCAGAAACAAAGTTTTTGAGTTGAACAGCAGCAAACATCAGGTTTTAAGTTAGATATTAATGCCCTTATTTAATCATCATACTACTTTTTTAGAATTAGAAAATTTGTAAAATTGAGGTTCTTCGTATAACGGATAAAGGACCCCTAATAAAAGGATTTTCTAAAAAACTATTTATCTTCAATTTTCACGTTTTTTAAGTTGATTTCTGGGAAAAAAGGTAAATGTTCATAAAAATGAGCTCTGAACATGTTCAGGTAGCTTTTTAGAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36777</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>526179</contig_pos>
        <strand></strand>
        <context>ACTTCCATTC[A/C]CATTTTTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAAAAAAACCAAAGTGAATTAGAAACGGATGCCACACACACTTCCATTC</left_flank>
        <right_flank>CATTTTTTCTTCATTCAGTACCTTTCAAACCTTTTTCCTTCTCTTTCTAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCCTAACTTTATCTATTTATGTCATATCTATCAGAAACAAAGTTTTTGAGTTGAACAGCAGCAAACATCAGGTTTTAAGTTAGATATTAATGCCCTTATTTAATCATCATACTACTTTTTTAGAATTAGAAAATTTGTAAAATTGAGGTTCTTCGTATAACGGATAAAGGACCCCTAATAAAAGGATTTTCTAAAAAACTATTTATCTTCAATTTTCACGTTTTTTAAGTTGATTTCTGGGAAAAAAGGTAAATGTTCATAAAAATGAGCTCTGAACATGTTCAGGTAGCTTTTTAGAAGAATATGAAATTTCACAACACCTCGTCTAGAGTCACTATTTGTTCCGGTTCTACAACCCACTCCTTTGAAGTCTTTTACTTCTTCAAAAACCTTGTACTTGGAACCTGGAAACAAAATCTCCACAAAATAAGGTTCAAGTCTTTCCAAAAAAAAAAACCAAAGTGAATTAGAAACGGATGCCACACACACTTCCATTCACATTTTTTCTTCATTCAGTACCTTTCAAACCTTTTTCCTTCTCTTTCTAATTTTATTTTGTCTCAGAGCCTTGGTCTCACAAATGGCTTTTCAGAAGATAGAGAAAAAAGAACAGATCCTTGGACCCGAAACAAAAACAAAACGAAAAAAAAACCAAAAAATGAGGGCACACACACCGTTGAAAAGAGCCCCCCCCCCCCCCCCAAAAAAAATGACAAAGAGAATGTGATTGGGTGTAAGAAAGAGCACAAAAAAAGGAACATTAGGAGGGGGTGAAAACTCCAAACATGGGGCCAAAAAGTAGATAATACGCAGCAAATAACCGCTGCTCCCCCGGGATCCGACATCTGGCGGTAGGAGAACTTTCTCCTTGTGTGTTCACAAGGACATGTTGGAAATTTAGAAGAAGAAGGAGAAGGAGGAATCGGAAAAGGAAAAGATGGAGGTCCAGAAACGTTTGTTAGAAGTGTAGAACACGTGAATTAATCACTTGACAAGTT</canonical>
            <polymorphic>ATTCCTAACTTTATCTATTTATGTCATATCTATCAGAAACAAAGTTTTTGAGTTGAACAGCAGCAAACATCAGGTTTTAAGTTAGATATTAATGCCCTTATTTAATCATCATACTACTTTTTTAGAATTAGAAAATTTGTAAAATTGAGGTTCTTCGTATAACGGATAAAGGACCCCTAATAAAAGGATTTTCTAAAAAACTATTTATCTTCAATTTTCACGTTTTTTAAGTTGATTTCTGGGAAAAAAGGTAAATGTTCATAAAAATGAGCTCTGAACATGTTCAGGTAGCTTTTTAGAAGAATATGAAATTTCACAACACCTCGTCTAGAGTCACTATTTGTTCCGGTTCTACAACCCACTCCTTTGAAGTCTTTTACTTCTTCAAAAACCTTGTACTTGGAACCTGGAAACAAAATCTCCACAAAATAAGGTTCAAGTCTTTCCAAAAAAAAAAACCAAAGTGAATTAGAAACGGATGCCACACACACTTCCATTCMCATTTTTTCTTCATTCAGTACCTTTCAAACCTTTTTCCTTCTCTTTCTAATTTTATTTTGTCTCAGAGCCTTGGTCTCACAAATGGCTTTTCAGAAGATAGAGAAAAAAGAACAGATCCTTGGACCCGAAACAAAAACAAAACGAAAAAAAAACCAAAAAATGAGGGCACACACACCGTTGAAAAGAGCCCCCCCCCCCCCCCCAAAAAAAATGACAAAGAGAATGTGATTGGGTGTAAGAAAGAGCACAAAAAAAGGAACATTAGGAGGGGGTGAAAACTCCAAACATGGGGCCAAAAAGTAGATAATACGCAGCAAATAACCGCTGCTCCCCCGGGATCCGACATCTGGCGGTAGGAGAACTTTCTCCTTGTGTGTTCACAAGGACATGTTGGAAATTTAGAAGAAGAAGGAGAAGGAGGAATCGGAAAAGGAAAAGATGGAGGTCCAGAAACGTTTGTTAGAAGTGTAGAACACGTGAATTAATCACTTGACAAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>220 100 96 90 88 79 63 53 42 27 25 18 15 12 11 10 9 8 7 5 4 4 2 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>220 100 96 90 89 88 63 53 42 27 25 18 15 12 11 9 8 7 5 4 4 2 2 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTCTAGAGTCACTATTTGTTCC</pcr_primer_p1>
		<pcr_primer_p2>AAGGCTCTGAGACAAAATAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CGTCTAGAGTCACTATTTGTTCCGGTTCTACAACCCACTCCTTTGAAGTCTTTTACTTCTTCAAAAACCTTGTACTTGGAACCTGGAAACAAAATCTCCACAAAATAAGGTTCAAGTCTTTCCAAAAAAAAAAACCAAAGTGAATTAGAAACGGATGCCACACACACTTCCATTCACATTTTTTCTTCATTCAGTACCTTTCAAACCTTTTTCCTTCTCTTTCTAATTTTATTTTGTCTCAGAGCCTT</canonical_amplicon>
		<polymorphic_amplicon>CGTCTAGAGTCACTATTTGTTCCGGTTCTACAACCCACTCCTTTGAAGTCTTTTACTTCTTCAAAAACCTTGTACTTGGAACCTGGAAACAAAATCTCCACAAAATAAGGTTCAAGTCTTTCCAAAAAAAAAAACCAAAGTGAATTAGAAACGGATGCCACACACACTTCCATTCMCATTTTTTCTTCATTCAGTACCTTTCAAACCTTTTTCCTTCTCTTTCTAATTTTATTTTGTCTCAGAGCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36778</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>528422</contig_pos>
        <strand>+</strand>
        <context>tacggtATAC[C/T]AAGAAAATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATAC</left_flank>
        <right_flank>AAGAAAATTCTCAATCGATTATCGTCTATTTTGACCATTTTTAGGGGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGCTGTAGATAACGAATGGAAAAATAGAAATGAAAATTTGAAATGACTGGTGGAATAGTACTGGACATGAAGAAGACGCCGGGTGGTATGATGATAAGAAAATGTTGTTTGAGAATGGGATTATTCAATTGGACACCGGCGGCTTTTTAGTGGAATAAACATGACCGACGGAACAAAAAATCATTTCGAAATATCAAATTTTTTATATTGAGGACACCGGTCAGTAGGGTATACCGCTTAGTAGTATATACCTTGCACCGCTCAGTAGGATACCGTAAAACCTCTAATAGAACGACCCCCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAAGTGGTTAACTAGTAAAATGTTTATCAGGATATCAGCAACATTTTACTAGTTAGTCACTTTTTGATATCTCTCACAAAAAATGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATACCAAGAAAATTCTCAATCGATTATCGTCTATTTTGACCATTTTTAGGGGTTTTTGTACTGAATACACAAAAAACGTGTTTTTCAGAAATCGGCAATTAGTTGAAAAACTAGAAATTTTCAAAAAATTGTATGAGTGCGAATTTTTAATTTTAGGTCTATTTTACATTCACCAAAACTTTCTAAGTGATCGGAAATTTGACATCCGGGCTCCAGATTACTGAAAATCTCAAAATGGCCAAAAAACTACTAATAAACTACTTTTCTTAGTTTTAAAACTTCAAAAAATTGCTTCCAGGGGCTGATAAACCTTGTTTCTGAAAACTTCTGAAGGGATCTCAAATTTCTATCGAATTCTTGCAAAAACTTTAAATTCTACCTCTGCAAACTGTTAAAAATGGGTATTCAGCTTTTTGAAGTCATTTTTTGAGGAATTCAATTCTTTTTCAATTTTTGAATGTTTGAATCTACATATTTCTTTACACATTTTAATTCAATAAAATAT</canonical>
            <polymorphic>TCTGCTGTAGATAACGAATGGAAAAATAGAAATGAAAATTTGAAATGACTGGTGGAATAGTACTGGACATGAAGAAGACGCCGGGTGGTATGATGATAAGAAAATGTTGTTTGAGAATGGGATTATTCAATTGGACACCGGCGGCTTTTTAGTGGAATAAACATGACCGACGGAACAAAAAATCATTTCGAAATATCAAATTTTTTATATTGAGGACACCGGTCAGTAGGGTATACCGCTTAGTAGTATATACCTTGCACCGCTCAGTAGGATACCGTAAAACCTCTAATAGAACGACCCCCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAAGTGGTTAACTAGTAAAATGTTTATCAGGATATCAGCAACATTTTACTAGTTAGTCACTTTTTGATATCTCTCACAAAAAATGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATACYAAGAAAATTCTCAATCGATTATCGTCTATTTTGACCATTTTTAGGGGTTTTTGTACTGAATACACAAAAAACGTGTTTTTCAGAAATCGGCAATTAGTTGAAAAACTAGAAATTTTCAAAAAATTGTATGAGTGCGAATTTTTAATTTTAGGTCTATTTTACATTCACCAAAACTTTCTAAGTGATCGGAAATTTGACATCCGGGCTCCAGATTACTGAAAATCTCAAAATGGCCAAAAAACTACTAATAAACTACTTTTCTTAGTTTTAAAACTTCAAAAAATTGCTTCCAGGGGCTGATAAACCTTGTTTCTGAAAACTTCTGAAGGGATCTCAAATTTCTATCGAATTCTTGCAAAAACTTTAAATTCTACCTCTGCAAACTGTTAAAAATGGGTATTCAGCTTTTTGAAGTCATTTTTTGAGGAATTCAATTCTTTTTCAATTTTTGAATGTTTGAATCTACATATTTCTTTACACATTTTAATTCAATAAAATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTAGGGTATACCGCTTAGTAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTAACAGTTTGCAGAGGT</pcr_primer_p2>
		<pcr_amplicon_size>671</pcr_amplicon_size>
		<canonical_amplicon>CAGTAGGGTATACCGCTTAGTAGTATATACCTTGCACCGCTCAGTAGGATACCGTAAAACCTCTAATAGAACGACCCCCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAAGTGGTTAACTAGTAAAATGTTTATCAGGATATCAGCAACATTTTACTAGTTAGTCACTTTTTGATATCTCTCACAAAAAATGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATACCAAGAAAATTCTCAATCGATTATCGTCTATTTTGACCATTTTTAGGGGTTTTTGTACTGAATACACAAAAAACGTGTTTTTCAGAAATCGGCAATTAGTTGAAAAACTAGAAATTTTCAAAAAATTGTATGAGTGCGAATTTTTAATTTTAGGTCTATTTTACATTCACCAAAACTTTCTAAGTGATCGGAAATTTGACATCCGGGCTCCAGATTACTGAAAATCTCAAAATGGCCAAAAAACTACTAATAAACTACTTTTCTTAGTTTTAAAACTTCAAAAAATTGCTTCCAGGGGCTGATAAACCTTGTTTCTGAAAACTTCTGAAGGGATCTCAAATTTCTATCGAATTCTTGCAAAAACTTTAAATTCTACCTCTGCAAACTGTTAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CAGTAGGGTATACCGCTTAGTAGTATATACCTTGCACCGCTCAGTAGGATACCGTAAAACCTCTAATAGAACGACCCCCCGGATCGTCCACTTTGAGCCTATATATCTCACTTCTTTTGAAAGATATCAAAAAGTGGTTAACTAGTAAAATGTTTATCAGGATATCAGCAACATTTTACTAGTTAGTCACTTTTTGATATCTCTCACAAAAAATGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTATACYAAGAAAATTCTCAATCGATTATCGTCTATTTTGACCATTTTTAGGGGTTTTTGTACTGAATACACAAAAAACGTGTTTTTCAGAAATCGGCAATTAGTTGAAAAACTAGAAATTTTCAAAAAATTGTATGAGTGCGAATTTTTAATTTTAGGTCTATTTTACATTCACCAAAACTTTCTAAGTGATCGGAAATTTGACATCCGGGCTCCAGATTACTGAAAATCTCAAAATGGCCAAAAAACTACTAATAAACTACTTTTCTTAGTTTTAAAACTTCAAAAAATTGCTTCCAGGGGCTGATAAACCTTGTTTCTGAAAACTTCTGAAGGGATCTCAAATTTCTATCGAATTCTTGCAAAAACTTTAAATTCTACCTCTGCAAACTGTTAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36779</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>547833</contig_pos>
        <strand></strand>
        <context>TCATGATTTG[A/G]AACTGCTTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTG</left_flank>
        <right_flank>AACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTG</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATACAGTGGTCACAATGTCCTAAAATATTTGGAGGACTATGTAAACGAAAATCCTGGATATATCTTTGTGTCAGCAACATGAATACAAAACGTATTCATCATCTGTAAGAATGTTATCATCTTGCAGTTTCTGAACGGGACTGTCACAATTTGTTCCCAAATTGTTCTCATTTTTAGAAACACACAGATAATCCATGATGTTCTTCACATTTAATCCGGCACTCATTTCAATTGATAACAGAGTATAAAATCTGAAAAACATGTTATTCGAACGAATCTTTGTTCCTAATCCATATCCATATTTTCATCGTTTCTCCGTAAGATTATAACATGAAAATCAAAGTTTTCGGATTAGCAATGTGATATCTCGATGTAATCGGTATTAGATATACTGATATTAGATAACCTTATCAGTTGAATTGAAGAGATTCGTTTCTATTCTTTGTTCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTATACAATCCTACTAAATACAAACTATATGGTTGTTGTGCAACTTCAGAATAAAGAATTGGAATGGCAATTGCTTGAAAAAGACCACCCCCCCCCCCCCCCCTCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTAACACTTTGCTCAAGTCACTGTTCCTGGCAGTGCCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACAAAGACAACCAACTGTTCTTA</canonical>
            <polymorphic>AATATACAGTGGTCACAATGTCCTAAAATATTTGGAGGACTATGTAAACGAAAATCCTGGATATATCTTTGTGTCAGCAACATGAATACAAAACGTATTCATCATCTGTAAGAATGTTATCATCTTGCAGTTTCTGAACGGGACTGTCACAATTTGTTCCCAAATTGTTCTCATTTTTAGAAACACACAGATAATCCATGATGTTCTTCACATTTAATCCGGCACTCATTTCAATTGATAACAGAGTATAAAATCTGAAAAACATGTTATTCGAACGAATCTTTGTTCCTAATCCATATCCATATTTTCATCGTTTCTCCGTAAGATTATAACATGAAAATCAAAGTTTTCGGATTAGCAATGTGATATCTCGATGTAATCGGTATTAGATATACTGATATTAGATAACCTTATCAGTTGAATTGAAGAGATTCGTTTCTATTCTTTGTTCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTGRAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTATACAATCCTACTAAATACAAACTATATGGTTGTTGTGCAACTTCAGAATAAAGAATTGGAATGGCAATTGCTTGAAAAAGACCACCCCCCCCCCCCCCCCTCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTAACACTTTGCTCAAGTCACTGTTCCTGGCAGTGCCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACAAAGACAACCAACTGTTCTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTCGTTTCTATTCTTTGTTCTT</pcr_primer_p1>
		<pcr_primer_p2>ATACAGTAGGCTTGCATTAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATTCGTTTCTATTCTTTGTTCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTAT</canonical_amplicon>
		<polymorphic_amplicon>GATTCGTTTCTATTCTTTGTTCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTGRAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36780</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>547852</contig_pos>
        <strand></strand>
        <context>TGGAGAAACA[T/C]AACAAGTGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGTCCCGAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACA</left_flank>
        <right_flank>AACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCTAAAATATTTGGAGGACTATGTAAACGAAAATCCTGGATATATCTTTGTGTCAGCAACATGAATACAAAACGTATTCATCATCTGTAAGAATGTTATCATCTTGCAGTTTCTGAACGGGACTGTCACAATTTGTTCCCAAATTGTTCTCATTTTTAGAAACACACAGATAATCCATGATGTTCTTCACATTTAATCCGGCACTCATTTCAATTGATAACAGAGTATAAAATCTGAAAAACATGTTATTCGAACGAATCTTTGTTCCTAATCCATATCCATATTTTCATCGTTTCTCCGTAAGATTATAACATGAAAATCAAAGTTTTCGGATTAGCAATGTGATATCTCGATGTAATCGGTATTAGATATACTGATATTAGATAACCTTATCAGTTGAATTGAAGAGATTCGTTTCTATTCTTTGTTCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTATACAATCCTACTAAATACAAACTATATGGTTGTTGTGCAACTTCAGAATAAAGAATTGGAATGGCAATTGCTTGAAAAAGACCACCCCCCCCCCCCCCCCTCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTAACACTTTGCTCAAGTCACTGTTCCTGGCAGTGCCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACAAAGACAACCAACTGTTCTTATCATCGAACGTACATGTGC</canonical>
            <polymorphic>GTCCTAAAATATTTGGAGGACTATGTAAACGAAAATCCTGGATATATCTTTGTGTCAGCAACATGAATACAAAACGTATTCATCATCTGTAAGAATGTTATCATCTTGCAGTTTCTGAACGGGACTGTCACAATTTGTTCCCAAATTGTTCTCATTTTTAGAAACACACAGATAATCCATGATGTTCTTCACATTTAATCCGGCACTCATTTCAATTGATAACAGAGTATAAAATCTGAAAAACATGTTATTCGAACGAATCTTTGTTCCTAATCCATATCCATATTTTCATCGTTTCTCCGTAAGATTATAACATGAAAATCAAAGTTTTCGGATTAGCAATGTGATATCTCGATGTAATCGGTATTAGATATACTGATATTAGATAACCTTATCAGTTGAATTGAAGAGATTCGTTTCTATTCTTTGTTCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACAYAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTATACAATCCTACTAAATACAAACTATATGGTTGTTGTGCAACTTCAGAATAAAGAATTGGAATGGCAATTGCTTGAAAAAGACCACCCCCCCCCCCCCCCCTCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTAACACTTTGCTCAAGTCACTGTTCCTGGCAGTGCCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACAAAGACAACCAACTGTTCTTATCATCGAACGTACATGTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTCGTTTCTATTCTTTGTTCTT</pcr_primer_p1>
		<pcr_primer_p2>ATACAGTAGGCTTGCATTAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATTCGTTTCTATTCTTTGTTCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTAT</canonical_amplicon>
		<polymorphic_amplicon>GATTCGTTTCTATTCTTTGTTCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACAYAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36781</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>547893</contig_pos>
        <strand></strand>
        <context>GTATAGGCTG[A/C]ATTGATAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTG</left_flank>
        <right_flank>ATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATATCTTTGTGTCAGCAACATGAATACAAAACGTATTCATCATCTGTAAGAATGTTATCATCTTGCAGTTTCTGAACGGGACTGTCACAATTTGTTCCCAAATTGTTCTCATTTTTAGAAACACACAGATAATCCATGATGTTCTTCACATTTAATCCGGCACTCATTTCAATTGATAACAGAGTATAAAATCTGAAAAACATGTTATTCGAACGAATCTTTGTTCCTAATCCATATCCATATTTTCATCGTTTCTCCGTAAGATTATAACATGAAAATCAAAGTTTTCGGATTAGCAATGTGATATCTCGATGTAATCGGTATTAGATATACTGATATTAGATAACCTTATCAGTTGAATTGAAGAGATTCGTTTCTATTCTTTGTTCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTATACAATCCTACTAAATACAAACTATATGGTTGTTGTGCAACTTCAGAATAAAGAATTGGAATGGCAATTGCTTGAAAAAGACCACCCCCCCCCCCCCCCCTCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTAACACTTTGCTCAAGTCACTGTTCCTGGCAGTGCCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACAAAGACAACCAACTGTTCTTATCATCGAACGTACATGTGCCCCCACACTTCGGACATGCGGTCAGTTGCTTCTTTTTCCCT</canonical>
            <polymorphic>ATATATCTTTGTGTCAGCAACATGAATACAAAACGTATTCATCATCTGTAAGAATGTTATCATCTTGCAGTTTCTGAACGGGACTGTCACAATTTGTTCCCAAATTGTTCTCATTTTTAGAAACACACAGATAATCCATGATGTTCTTCACATTTAATCCGGCACTCATTTCAATTGATAACAGAGTATAAAATCTGAAAAACATGTTATTCGAACGAATCTTTGTTCCTAATCCATATCCATATTTTCATCGTTTCTCCGTAAGATTATAACATGAAAATCAAAGTTTTCGGATTAGCAATGTGATATCTCGATGTAATCGGTATTAGATATACTGATATTAGATAACCTTATCAGTTGAATTGAAGAGATTCGTTTCTATTCTTTGTTCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGMATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTATACAATCCTACTAAATACAAACTATATGGTTGTTGTGCAACTTCAGAATAAAGAATTGGAATGGCAATTGCTTGAAAAAGACCACCCCCCCCCCCCCCCCTCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTAACACTTTGCTCAAGTCACTGTTCCTGGCAGTGCCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACAAAGACAACCAACTGTTCTTATCATCGAACGTACATGTGCCCCCACACTTCGGACATGCGGTCAGTTGCTTCTTTTTCCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>188 183 155 139 134 90 70 17 12 12</canonical_bands>
                <polymorphic_bands>188 183 156 155 134 90 70 12 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTCGTTTCTATTCTTTGTTCTT</pcr_primer_p1>
		<pcr_primer_p2>ATACAGTAGGCTTGCATTAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATTCGTTTCTATTCTTTGTTCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTAT</canonical_amplicon>
		<polymorphic_amplicon>GATTCGTTTCTATTCTTTGTTCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGMATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36782</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>547918</contig_pos>
        <strand></strand>
        <context>TAAATTTACT[A/G]AAAGTTAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACT</left_flank>
        <right_flank>AAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATACAAAACGTATTCATCATCTGTAAGAATGTTATCATCTTGCAGTTTCTGAACGGGACTGTCACAATTTGTTCCCAAATTGTTCTCATTTTTAGAAACACACAGATAATCCATGATGTTCTTCACATTTAATCCGGCACTCATTTCAATTGATAACAGAGTATAAAATCTGAAAAACATGTTATTCGAACGAATCTTTGTTCCTAATCCATATCCATATTTTCATCGTTTCTCCGTAAGATTATAACATGAAAATCAAAGTTTTCGGATTAGCAATGTGATATCTCGATGTAATCGGTATTAGATATACTGATATTAGATAACCTTATCAGTTGAATTGAAGAGATTCGTTTCTATTCTTTGTTCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTATACAATCCTACTAAATACAAACTATATGGTTGTTGTGCAACTTCAGAATAAAGAATTGGAATGGCAATTGCTTGAAAAAGACCACCCCCCCCCCCCCCCCTCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTAACACTTTGCTCAAGTCACTGTTCCTGGCAGTGCCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACAAAGACAACCAACTGTTCTTATCATCGAACGTACATGTGCCCCCACACTTCGGACATGCGGTCAGTTGCTTCTTTTTCCCTTGCCCGATGGCCACACTCACTGATC</canonical>
            <polymorphic>ATACAAAACGTATTCATCATCTGTAAGAATGTTATCATCTTGCAGTTTCTGAACGGGACTGTCACAATTTGTTCCCAAATTGTTCTCATTTTTAGAAACACACAGATAATCCATGATGTTCTTCACATTTAATCCGGCACTCATTTCAATTGATAACAGAGTATAAAATCTGAAAAACATGTTATTCGAACGAATCTTTGTTCCTAATCCATATCCATATTTTCATCGTTTCTCCGTAAGATTATAACATGAAAATCAAAGTTTTCGGATTAGCAATGTGATATCTCGATGTAATCGGTATTAGATATACTGATATTAGATAACCTTATCAGTTGAATTGAAGAGATTCGTTTCTATTCTTTGTTCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTRAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTATACAATCCTACTAAATACAAACTATATGGTTGTTGTGCAACTTCAGAATAAAGAATTGGAATGGCAATTGCTTGAAAAAGACCACCCCCCCCCCCCCCCCTCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTAACACTTTGCTCAAGTCACTGTTCCTGGCAGTGCCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACAAAGACAACCAACTGTTCTTATCATCGAACGTACATGTGCCCCCACACTTCGGACATGCGGTCAGTTGCTTCTTTTTCCCTTGCCCGATGGCCACACTCACTGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTCGTTTCTATTCTTTGTTCTT</pcr_primer_p1>
		<pcr_primer_p2>ATACAGTAGGCTTGCATTAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATTCGTTTCTATTCTTTGTTCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTAT</canonical_amplicon>
		<polymorphic_amplicon>GATTCGTTTCTATTCTTTGTTCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTRAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36783</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>547951</contig_pos>
        <strand></strand>
        <context>TGATACACAT[A/T]TTTAACAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACAT</left_flank>
        <right_flank>TTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCATCTTGCAGTTTCTGAACGGGACTGTCACAATTTGTTCCCAAATTGTTCTCATTTTTAGAAACACACAGATAATCCATGATGTTCTTCACATTTAATCCGGCACTCATTTCAATTGATAACAGAGTATAAAATCTGAAAAACATGTTATTCGAACGAATCTTTGTTCCTAATCCATATCCATATTTTCATCGTTTCTCCGTAAGATTATAACATGAAAATCAAAGTTTTCGGATTAGCAATGTGATATCTCGATGTAATCGGTATTAGATATACTGATATTAGATAACCTTATCAGTTGAATTGAAGAGATTCGTTTCTATTCTTTGTTCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTATACAATCCTACTAAATACAAACTATATGGTTGTTGTGCAACTTCAGAATAAAGAATTGGAATGGCAATTGCTTGAAAAAGACCACCCCCCCCCCCCCCCCTCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTAACACTTTGCTCAAGTCACTGTTCCTGGCAGTGCCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACAAAGACAACCAACTGTTCTTATCATCGAACGTACATGTGCCCCCACACTTCGGACATGCGGTCAGTTGCTTCTTTTTCCCTTGCCCGATGGCCACACTCACTGATCTAGAAGAACTATGCGAAGTTCCACAGTTGTTAA</canonical>
            <polymorphic>ATCATCTTGCAGTTTCTGAACGGGACTGTCACAATTTGTTCCCAAATTGTTCTCATTTTTAGAAACACACAGATAATCCATGATGTTCTTCACATTTAATCCGGCACTCATTTCAATTGATAACAGAGTATAAAATCTGAAAAACATGTTATTCGAACGAATCTTTGTTCCTAATCCATATCCATATTTTCATCGTTTCTCCGTAAGATTATAACATGAAAATCAAAGTTTTCGGATTAGCAATGTGATATCTCGATGTAATCGGTATTAGATATACTGATATTAGATAACCTTATCAGTTGAATTGAAGAGATTCGTTTCTATTCTTTGTTCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATWTTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTATACAATCCTACTAAATACAAACTATATGGTTGTTGTGCAACTTCAGAATAAAGAATTGGAATGGCAATTGCTTGAAAAAGACCACCCCCCCCCCCCCCCCTCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTAACACTTTGCTCAAGTCACTGTTCCTGGCAGTGCCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACAAAGACAACCAACTGTTCTTATCATCGAACGTACATGTGCCCCCACACTTCGGACATGCGGTCAGTTGCTTCTTTTTCCCTTGCCCGATGGCCACACTCACTGATCTAGAAGAACTATGCGAAGTTCCACAGTTGTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTCGTTTCTATTCTTTGTTCTT</pcr_primer_p1>
		<pcr_primer_p2>ATACAGTAGGCTTGCATTAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATTCGTTTCTATTCTTTGTTCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTAT</canonical_amplicon>
		<polymorphic_amplicon>GATTCGTTTCTATTCTTTGTTCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATWTTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36784</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>547974</contig_pos>
        <strand></strand>
        <context>AATCGCAGAG[T/C]CCACTAAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAG</left_flank>
        <right_flank>CCACTAAATAAAGACAACTTAATGCAAGCCTACTGTATACAATCCTACTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACTGTCACAATTTGTTCCCAAATTGTTCTCATTTTTAGAAACACACAGATAATCCATGATGTTCTTCACATTTAATCCGGCACTCATTTCAATTGATAACAGAGTATAAAATCTGAAAAACATGTTATTCGAACGAATCTTTGTTCCTAATCCATATCCATATTTTCATCGTTTCTCCGTAAGATTATAACATGAAAATCAAAGTTTTCGGATTAGCAATGTGATATCTCGATGTAATCGGTATTAGATATACTGATATTAGATAACCTTATCAGTTGAATTGAAGAGATTCGTTTCTATTCTTTGTTCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTATACAATCCTACTAAATACAAACTATATGGTTGTTGTGCAACTTCAGAATAAAGAATTGGAATGGCAATTGCTTGAAAAAGACCACCCCCCCCCCCCCCCCTCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTAACACTTTGCTCAAGTCACTGTTCCTGGCAGTGCCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACAAAGACAACCAACTGTTCTTATCATCGAACGTACATGTGCCCCCACACTTCGGACATGCGGTCAGTTGCTTCTTTTTCCCTTGCCCGATGGCCACACTCACTGATCTAGAAGAACTATGCGAAGTTCCACAGTTGTTAAACTTTTAGTGTAATCGTGAAGGA</canonical>
            <polymorphic>GACTGTCACAATTTGTTCCCAAATTGTTCTCATTTTTAGAAACACACAGATAATCCATGATGTTCTTCACATTTAATCCGGCACTCATTTCAATTGATAACAGAGTATAAAATCTGAAAAACATGTTATTCGAACGAATCTTTGTTCCTAATCCATATCCATATTTTCATCGTTTCTCCGTAAGATTATAACATGAAAATCAAAGTTTTCGGATTAGCAATGTGATATCTCGATGTAATCGGTATTAGATATACTGATATTAGATAACCTTATCAGTTGAATTGAAGAGATTCGTTTCTATTCTTTGTTCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGYCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTATACAATCCTACTAAATACAAACTATATGGTTGTTGTGCAACTTCAGAATAAAGAATTGGAATGGCAATTGCTTGAAAAAGACCACCCCCCCCCCCCCCCCTCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTAACACTTTGCTCAAGTCACTGTTCCTGGCAGTGCCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACAAAGACAACCAACTGTTCTTATCATCGAACGTACATGTGCCCCCACACTTCGGACATGCGGTCAGTTGCTTCTTTTTCCCTTGCCCGATGGCCACACTCACTGATCTAGAAGAACTATGCGAAGTTCCACAGTTGTTAAACTTTTAGTGTAATCGTGAAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>350 200 153 153 136 8</canonical_bands>
                <polymorphic_bands>350 200 161 153 136</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 351 112 36</canonical_bands>
                <polymorphic_bands>537 351 112</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGACAGTAGTACGTCATGATT</pcr_primer_p1>
		<pcr_primer_p2>GAAGTTGCACAACAACCATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTATACAATCCTACTAAATACAAACTATATGGTTGTTGTGCAACTTC</canonical_amplicon>
		<polymorphic_amplicon>GAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGYCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTATACAATCCTACTAAATACAAACTATATGGTTGTTGTGCAACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36785</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>548016</contig_pos>
        <strand></strand>
        <context>ACTGTATACA[A/G]TCCTACTAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTATACA</left_flank>
        <right_flank>TCCTACTAAATACAAACTATATGGTTGTTGTGCAACTTCAGAATAAAGAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACACAGATAATCCATGATGTTCTTCACATTTAATCCGGCACTCATTTCAATTGATAACAGAGTATAAAATCTGAAAAACATGTTATTCGAACGAATCTTTGTTCCTAATCCATATCCATATTTTCATCGTTTCTCCGTAAGATTATAACATGAAAATCAAAGTTTTCGGATTAGCAATGTGATATCTCGATGTAATCGGTATTAGATATACTGATATTAGATAACCTTATCAGTTGAATTGAAGAGATTCGTTTCTATTCTTTGTTCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTATACAATCCTACTAAATACAAACTATATGGTTGTTGTGCAACTTCAGAATAAAGAATTGGAATGGCAATTGCTTGAAAAAGACCACCCCCCCCCCCCCCCCTCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTAACACTTTGCTCAAGTCACTGTTCCTGGCAGTGCCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACAAAGACAACCAACTGTTCTTATCATCGAACGTACATGTGCCCCCACACTTCGGACATGCGGTCAGTTGCTTCTTTTTCCCTTGCCCGATGGCCACACTCACTGATCTAGAAGAACTATGCGAAGTTCCACAGTTGTTAAACTTTTAGTGTAATCGTGAAGGAGTCTGATTGCCCATCGAAAAAATTCTCCAGCGAGACTCAGAC</canonical>
            <polymorphic>CACACAGATAATCCATGATGTTCTTCACATTTAATCCGGCACTCATTTCAATTGATAACAGAGTATAAAATCTGAAAAACATGTTATTCGAACGAATCTTTGTTCCTAATCCATATCCATATTTTCATCGTTTCTCCGTAAGATTATAACATGAAAATCAAAGTTTTCGGATTAGCAATGTGATATCTCGATGTAATCGGTATTAGATATACTGATATTAGATAACCTTATCAGTTGAATTGAAGAGATTCGTTTCTATTCTTTGTTCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTATACARTCCTACTAAATACAAACTATATGGTTGTTGTGCAACTTCAGAATAAAGAATTGGAATGGCAATTGCTTGAAAAAGACCACCCCCCCCCCCCCCCCTCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTAACACTTTGCTCAAGTCACTGTTCCTGGCAGTGCCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACAAAGACAACCAACTGTTCTTATCATCGAACGTACATGTGCCCCCACACTTCGGACATGCGGTCAGTTGCTTCTTTTTCCCTTGCCCGATGGCCACACTCACTGATCTAGAAGAACTATGCGAAGTTCCACAGTTGTTAAACTTTTAGTGTAATCGTGAAGGAGTCTGATTGCCCATCGAAAAAATTCTCCAGCGAGACTCAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACAGAAGGAATCGCAGAG</pcr_primer_p1>
		<pcr_primer_p2>TAAACTTCATTGAACAGCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTATACAATCCTACTAAATACAAACTATATGGTTGTTGTGCAACTTCAGAATAAAGAATTGGAATGGCAATTGCTTGAAAAAGACCACCCCCCCCCCCCCCCCTCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTA</canonical_amplicon>
		<polymorphic_amplicon>TAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTATACARTCCTACTAAATACAAACTATATGGTTGTTGTGCAACTTCAGAATAAAGAATTGGAATGGCAATTGCTTGAAAAAGACCACCCCCCCCCCCCCCCCTCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36786</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>548066</contig_pos>
        <strand></strand>
        <context>AGAATAAAGA[A/T]TTGGAATGGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCCTACTAAATACAAACTATATGGTTGTTGTGCAACTTCAGAATAAAGA</left_flank>
        <right_flank>TTGGAATGGCAATTGCTTGAAAAAGACCACCCCCCCCCCCCCCCCTCCAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGATAACAGAGTATAAAATCTGAAAAACATGTTATTCGAACGAATCTTTGTTCCTAATCCATATCCATATTTTCATCGTTTCTCCGTAAGATTATAACATGAAAATCAAAGTTTTCGGATTAGCAATGTGATATCTCGATGTAATCGGTATTAGATATACTGATATTAGATAACCTTATCAGTTGAATTGAAGAGATTCGTTTCTATTCTTTGTTCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTATACAATCCTACTAAATACAAACTATATGGTTGTTGTGCAACTTCAGAATAAAGAATTGGAATGGCAATTGCTTGAAAAAGACCACCCCCCCCCCCCCCCCTCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTAACACTTTGCTCAAGTCACTGTTCCTGGCAGTGCCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACAAAGACAACCAACTGTTCTTATCATCGAACGTACATGTGCCCCCACACTTCGGACATGCGGTCAGTTGCTTCTTTTTCCCTTGCCCGATGGCCACACTCACTGATCTAGAAGAACTATGCGAAGTTCCACAGTTGTTAAACTTTTAGTGTAATCGTGAAGGAGTCTGATTGCCCATCGAAAAAATTCTCCAGCGAGACTCAGACGTTCAACTTTACGAAAGTATTGGACCAAGTGTAAACTAACAAAAAAAGAT</canonical>
            <polymorphic>ATTGATAACAGAGTATAAAATCTGAAAAACATGTTATTCGAACGAATCTTTGTTCCTAATCCATATCCATATTTTCATCGTTTCTCCGTAAGATTATAACATGAAAATCAAAGTTTTCGGATTAGCAATGTGATATCTCGATGTAATCGGTATTAGATATACTGATATTAGATAACCTTATCAGTTGAATTGAAGAGATTCGTTTCTATTCTTTGTTCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTATACAATCCTACTAAATACAAACTATATGGTTGTTGTGCAACTTCAGAATAAAGAWTTGGAATGGCAATTGCTTGAAAAAGACCACCCCCCCCCCCCCCCCTCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTAACACTTTGCTCAAGTCACTGTTCCTGGCAGTGCCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACAAAGACAACCAACTGTTCTTATCATCGAACGTACATGTGCCCCCACACTTCGGACATGCGGTCAGTTGCTTCTTTTTCCCTTGCCCGATGGCCACACTCACTGATCTAGAAGAACTATGCGAAGTTCCACAGTTGTTAAACTTTTAGTGTAATCGTGAAGGAGTCTGATTGCCCATCGAAAAAATTCTCCAGCGAGACTCAGACGTTCAACTTTACGAAAGTATTGGACCAAGTGTAAACTAACAAAAAAAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>235 187 183 155 139 72 17 12</canonical_bands>
                <polymorphic_bands>235 187 183 167 139 72 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAACAGAAGGAATCGCAGAG</pcr_primer_p1>
		<pcr_primer_p2>TAAACTTCATTGAACAGCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTATACAATCCTACTAAATACAAACTATATGGTTGTTGTGCAACTTCAGAATAAAGAATTGGAATGGCAATTGCTTGAAAAAGACCACCCCCCCCCCCCCCCCTCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTA</canonical_amplicon>
		<polymorphic_amplicon>TAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTATACAATCCTACTAAATACAAACTATATGGTTGTTGTGCAACTTCAGAATAAAGAWTTGGAATGGCAATTGCTTGAAAAAGACCACCCCCCCCCCCCCCCCTCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36787</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>548207</contig_pos>
        <strand></strand>
        <context>ACTTTGCTCA[A/G]GTCACTGTTY</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTAACACTTTGCTCA</left_flank>
        <right_flank>GTCACTGTTCCTGGCAGTGCCAGTAAAGTTTTATTTCTGTTTTCAAATAC</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTAATCGGTATTAGATATACTGATATTAGATAACCTTATCAGTTGAATTGAAGAGATTCGTTTCTATTCTTTGTTCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTATACAATCCTACTAAATACAAACTATATGGTTGTTGTGCAACTTCAGAATAAAGAATTGGAATGGCAATTGCTTGAAAAAGACCACCCCCCCCCCCCCCCCTCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTAACACTTTGCTCAAGTCACTGTTCCTGGCAGTGCCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACAAAGACAACCAACTGTTCTTATCATCGAACGTACATGTGCCCCCACACTTCGGACATGCGGTCAGTTGCTTCTTTTTCCCTTGCCCGATGGCCACACTCACTGATCTAGAAGAACTATGCGAAGTTCCACAGTTGTTAAACTTTTAGTGTAATCGTGAAGGAGTCTGATTGCCCATCGAAAAAATTCTCCAGCGAGACTCAGACGTTCAACTTTACGAAAGTATTGGACCAAGTGTAAACTAACAAAAAAAGATATTGGATCAAAACAGAGCACCTTGGGACAAACGTGAAGAGAGAGAGATGAGCGAATCAGGAGCAAGTGTGTGAAGCCCATAATTTCTGGCTTACAAAGTTTCAGATACCTTACATGTTTCCTTGTAATAATAAAATTGATA</canonical>
            <polymorphic>TGTAATCGGTATTAGATATACTGATATTAGATAACCTTATCAGTTGAATTGAAGAGATTCGTTTCTATTCTTTGTTCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTATACAATCCTACTAAATACAAACTATATGGTTGTTGTGCAACTTCAGAATAAAGAATTGGAATGGCAATTGCTTGAAAAAGACCACCCCCCCCCCCCCCCCTCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTAACACTTTGCTCARGTCACTGTTCCTGGCAGTGCCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACAAAGACAACCAACTGTTCTTATCATCGAACGTACATGTGCCCCCACACTTCGGACATGCGGTCAGTTGCTTCTTTTTCCCTTGCCCGATGGCCACACTCACTGATCTAGAAGAACTATGCGAAGTTCCACAGTTGTTAAACTTTTAGTGTAATCGTGAAGGAGTCTGATTGCCCATCGAAAAAATTCTCCAGCGAGACTCAGACGTTCAACTTTACGAAAGTATTGGACCAAGTGTAAACTAACAAAAAAAGATATTGGATCAAAACAGAGCACCTTGGGACAAACGTGAAGAGAGAGAGATGAGCGAATCAGGAGCAAGTGTGTGAAGCCCATAATTTCTGGCTTACAAAGTTTCAGATACCTTACATGTTTCCTTGTAATAATAAAATTGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCAAGTTTGTTGACTCTTATGT</pcr_primer_p1>
		<pcr_primer_p2>CACATGTACGTTCGATGATAAG</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTAACACTTTGCTCAAGTCACTGTTCCTGGCAGTGCCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACAAAGACAACCAACTGTTCTTATCATCGAACGTACATGTG</canonical_amplicon>
		<polymorphic_amplicon>TCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTAACACTTTGCTCARGTCACTGTTCCTGGCAGTGCCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACAAAGACAACCAACTGTTCTTATCATCGAACGTACATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36788</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>548217</contig_pos>
        <strand></strand>
        <context>RGTCACTGTT[C/T]CTGGCAGTKC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGGTTCTTTGCTGTTCAATGAAGTTTAACACTTTGCTCAAGTCACTGTT</left_flank>
        <right_flank>CTGGCAGTGCCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTAGATATACTGATATTAGATAACCTTATCAGTTGAATTGAAGAGATTCGTTTCTATTCTTTGTTCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTATACAATCCTACTAAATACAAACTATATGGTTGTTGTGCAACTTCAGAATAAAGAATTGGAATGGCAATTGCTTGAAAAAGACCACCCCCCCCCCCCCCCCTCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTAACACTTTGCTCAAGTCACTGTTCCTGGCAGTGCCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACAAAGACAACCAACTGTTCTTATCATCGAACGTACATGTGCCCCCACACTTCGGACATGCGGTCAGTTGCTTCTTTTTCCCTTGCCCGATGGCCACACTCACTGATCTAGAAGAACTATGCGAAGTTCCACAGTTGTTAAACTTTTAGTGTAATCGTGAAGGAGTCTGATTGCCCATCGAAAAAATTCTCCAGCGAGACTCAGACGTTCAACTTTACGAAAGTATTGGACCAAGTGTAAACTAACAAAAAAAGATATTGGATCAAAACAGAGCACCTTGGGACAAACGTGAAGAGAGAGAGATGAGCGAATCAGGAGCAAGTGTGTGAAGCCCATAATTTCTGGCTTACAAAGTTTCAGATACCTTACATGTTTCCTTGTAATAATAAAATTGATAGTTGGATGTG</canonical>
            <polymorphic>ATTAGATATACTGATATTAGATAACCTTATCAGTTGAATTGAAGAGATTCGTTTCTATTCTTTGTTCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTATACAATCCTACTAAATACAAACTATATGGTTGTTGTGCAACTTCAGAATAAAGAATTGGAATGGCAATTGCTTGAAAAAGACCACCCCCCCCCCCCCCCCTCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTAACACTTTGCTCAAGTCACTGTTYCTGGCAGTGCCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACAAAGACAACCAACTGTTCTTATCATCGAACGTACATGTGCCCCCACACTTCGGACATGCGGTCAGTTGCTTCTTTTTCCCTTGCCCGATGGCCACACTCACTGATCTAGAAGAACTATGCGAAGTTCCACAGTTGTTAAACTTTTAGTGTAATCGTGAAGGAGTCTGATTGCCCATCGAAAAAATTCTCCAGCGAGACTCAGACGTTCAACTTTACGAAAGTATTGGACCAAGTGTAAACTAACAAAAAAAGATATTGGATCAAAACAGAGCACCTTGGGACAAACGTGAAGAGAGAGAGATGAGCGAATCAGGAGCAAGTGTGTGAAGCCCATAATTTCTGGCTTACAAAGTTTCAGATACCTTACATGTTTCCTTGTAATAATAAAATTGATAGTTGGATGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>499 347 154</canonical_bands>
                <polymorphic_bands>846 154</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>499 347 154</canonical_bands>
                <polymorphic_bands>846 154</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCAAGTTTGTTGACTCTTATGT</pcr_primer_p1>
		<pcr_primer_p2>CACATGTACGTTCGATGATAAG</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTAACACTTTGCTCAAGTCACTGTTCCTGGCAGTGCCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACAAAGACAACCAACTGTTCTTATCATCGAACGTACATGTG</canonical_amplicon>
		<polymorphic_amplicon>TCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTAACACTTTGCTCAAGTCACTGTTYCTGGCAGTGCCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACAAAGACAACCAACTGTTCTTATCATCGAACGTACATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36789</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>548226</contig_pos>
        <strand></strand>
        <context>TYCTGGCAGT[G/T]CCAGTAAAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGCTGTTCAATGAAGTTTAACACTTTGCTCAAGTCACTGTTCCTGGCAGT</left_flank>
        <right_flank>CCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTGATATTAGATAACCTTATCAGTTGAATTGAAGAGATTCGTTTCTATTCTTTGTTCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTATACAATCCTACTAAATACAAACTATATGGTTGTTGTGCAACTTCAGAATAAAGAATTGGAATGGCAATTGCTTGAAAAAGACCACCCCCCCCCCCCCCCCTCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTAACACTTTGCTCAAGTCACTGTTCCTGGCAGTGCCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACAAAGACAACCAACTGTTCTTATCATCGAACGTACATGTGCCCCCACACTTCGGACATGCGGTCAGTTGCTTCTTTTTCCCTTGCCCGATGGCCACACTCACTGATCTAGAAGAACTATGCGAAGTTCCACAGTTGTTAAACTTTTAGTGTAATCGTGAAGGAGTCTGATTGCCCATCGAAAAAATTCTCCAGCGAGACTCAGACGTTCAACTTTACGAAAGTATTGGACCAAGTGTAAACTAACAAAAAAAGATATTGGATCAAAACAGAGCACCTTGGGACAAACGTGAAGAGAGAGAGATGAGCGAATCAGGAGCAAGTGTGTGAAGCCCATAATTTCTGGCTTACAAAGTTTCAGATACCTTACATGTTTCCTTGTAATAATAAAATTGATAGTTGGATGTGTTTGATGGG</canonical>
            <polymorphic>ACTGATATTAGATAACCTTATCAGTTGAATTGAAGAGATTCGTTTCTATTCTTTGTTCTTTATAATCCTAATGCTTGTCCCGAGGACAGTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTATACAATCCTACTAAATACAAACTATATGGTTGTTGTGCAACTTCAGAATAAAGAATTGGAATGGCAATTGCTTGAAAAAGACCACCCCCCCCCCCCCCCCTCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTAACACTTTGCTCAAGTCACTGTTCCTGGCAGTKCCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACAAAGACAACCAACTGTTCTTATCATCGAACGTACATGTGCCCCCACACTTCGGACATGCGGTCAGTTGCTTCTTTTTCCCTTGCCCGATGGCCACACTCACTGATCTAGAAGAACTATGCGAAGTTCCACAGTTGTTAAACTTTTAGTGTAATCGTGAAGGAGTCTGATTGCCCATCGAAAAAATTCTCCAGCGAGACTCAGACGTTCAACTTTACGAAAGTATTGGACCAAGTGTAAACTAACAAAAAAAGATATTGGATCAAAACAGAGCACCTTGGGACAAACGTGAAGAGAGAGAGATGAGCGAATCAGGAGCAAGTGTGTGAAGCCCATAATTTCTGGCTTACAAAGTTTCAGATACCTTACATGTTTCCTTGTAATAATAAAATTGATAGTTGGATGTGTTTGATGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>134 79 78 71 69 64 61 56 47 47 41 38 33 30 29 23 20 16 15 14 9 8 6 4 2 2 2 2</canonical_bands>
                <polymorphic_bands>134 84 79 78 71 64 61 56 47 47 41 38 33 30 29 23 20 16 14 9 8 6 4 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCAAGTTTGTTGACTCTTATGT</pcr_primer_p1>
		<pcr_primer_p2>CACATGTACGTTCGATGATAAG</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTAACACTTTGCTCAAGTCACTGTTCCTGGCAGTGCCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACAAAGACAACCAACTGTTCTTATCATCGAACGTACATGTG</canonical_amplicon>
		<polymorphic_amplicon>TCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTAACACTTTGCTCAAGTCACTGTTCCTGGCAGTKCCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACAAAGACAACCAACTGTTCTTATCATCGAACGTACATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36790</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>548314</contig_pos>
        <strand></strand>
        <context>AAAGAGGACA[A/C]AGACAACCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACA</left_flank>
        <right_flank>AGACAACCAACTGTTCTTATCATCGAACGTACATGTGCCCCCACACTTCG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTATACAATCCTACTAAATACAAACTATATGGTTGTTGTGCAACTTCAGAATAAAGAATTGGAATGGCAATTGCTTGAAAAAGACCACCCCCCCCCCCCCCCCTCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTAACACTTTGCTCAAGTCACTGTTCCTGGCAGTGCCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACAAAGACAACCAACTGTTCTTATCATCGAACGTACATGTGCCCCCACACTTCGGACATGCGGTCAGTTGCTTCTTTTTCCCTTGCCCGATGGCCACACTCACTGATCTAGAAGAACTATGCGAAGTTCCACAGTTGTTAAACTTTTAGTGTAATCGTGAAGGAGTCTGATTGCCCATCGAAAAAATTCTCCAGCGAGACTCAGACGTTCAACTTTACGAAAGTATTGGACCAAGTGTAAACTAACAAAAAAAGATATTGGATCAAAACAGAGCACCTTGGGACAAACGTGAAGAGAGAGAGATGAGCGAATCAGGAGCAAGTGTGTGAAGCCCATAATTTCTGGCTTACAAAGTTTCAGATACCTTACATGTTTCCTTGTAATAATAAAATTGATAGTTGGATGTGTTTGATGGGTAAAATGTTTGATGGGTAAAATATTTGGATTTTCATTTACTTCATGAGGATTGTATAGGGTAAATCTTTTTTTAGAACCTCTGATCGT</canonical>
            <polymorphic>GTAGTACGTCATGATTTGAAACTGCTTTGGAGAAACATAACAAGTGCTTACTGTACCTGGATGTATGTGTATAGGCTGAATTGATAAAGTTTCTAAATTTACTAAAAGTTAATGAAAGTAAGAAAATGATACACATATTTAACAGAAGGAATCGCAGAGTCCACTAAATAAAGACAACTTAATGCAAGCCTACTGTATACAATCCTACTAAATACAAACTATATGGTTGTTGTGCAACTTCAGAATAAAGAATTGGAATGGCAATTGCTTGAAAAAGACCACCCCCCCCCCCCCCCCTCCAAGTTTGTTGACTCTTATGTCACCCCCAAGAAATGCTTCCAAGCTTCAGTTGAAGGTTCTTTGCTGTTCAATGAAGTTTAACACTTTGCTCAAGTCACTGTTCCTGGCAGTGCCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACAMAGACAACCAACTGTTCTTATCATCGAACGTACATGTGCCCCCACACTTCGGACATGCGGTCAGTTGCTTCTTTTTCCCTTGCCCGATGGCCACACTCACTGATCTAGAAGAACTATGCGAAGTTCCACAGTTGTTAAACTTTTAGTGTAATCGTGAAGGAGTCTGATTGCCCATCGAAAAAATTCTCCAGCGAGACTCAGACGTTCAACTTTACGAAAGTATTGGACCAAGTGTAAACTAACAAAAAAAGATATTGGATCAAAACAGAGCACCTTGGGACAAACGTGAAGAGAGAGAGATGAGCGAATCAGGAGCAAGTGTGTGAAGCCCATAATTTCTGGCTTACAAAGTTTCAGATACCTTACATGTTTCCTTGTAATAATAAAATTGATAGTTGGATGTGTTTGATGGGTAAAATGTTTGATGGGTAAAATATTTGGATTTTCATTTACTTCATGAGGATTGTATAGGGTAAATCTTTTTTTAGAACCTCTGATCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGTAAAGTTTTATTTCTGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>ACTCCTTCACGATTACACTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACAAAGACAACCAACTGTTCTTATCATCGAACGTACATGTGCCCCCACACTTCGGACATGCGGTCAGTTGCTTCTTTTTCCCTTGCCCGATGGCCACACTCACTGATCTAGAAGAACTATGCGAAGTTCCACAGTTGTTAAACTTTTAGTGTAATCGTGAAGGAGT</canonical_amplicon>
		<polymorphic_amplicon>CCAGTAAAGTTTTATTTCTGTTTTCAAATACCCAATTTCTGAGAAAAAAAACGCTGTTAAACTTTGCCACATAGTTTAAAGAGGACAMAGACAACCAACTGTTCTTATCATCGAACGTACATGTGCCCCCACACTTCGGACATGCGGTCAGTTGCTTCTTTTTCCCTTGCCCGATGGCCACACTCACTGATCTAGAAGAACTATGCGAAGTTCCACAGTTGTTAAACTTTTAGTGTAATCGTGAAGGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36791</snp_id>
        <super_contig>c011301003.Contig1</super_contig>
        <contig_pos>564257</contig_pos>
        <strand></strand>
        <context>CTAAAAAAGT[A/G]AAACACTCAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAAACATAGACTCCGCCCCTTTTTTACAATTTTGAGAATCTAAAAAAGT</left_flank>
        <right_flank>AAACACTCACTGTTCCAATCTCATGTTTTGAAGAAAAATGTATCACAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCCCAACAAATTCGAATTCATATCCAAATGTGCTGCAAAATGTGTGAATTGACGATTTTCTATCAAAACTCACTTTTTATAATGATATATTTCATACGTGGCATTCCTCCAGCCAACCAATGTTTCAGAAACTTAGTCGCCGATTATCGTCTGCCTACTTGTTCCAAATCGCATTTCATCAAATCTTGAACCGTTGGTAGTAGTGGGTTTATCAAAAACGTTGGGTTCAGCTTCCATGTGAAAAAAATCGGTTTTCTTTTAATTGATCCTAACTATCACACCACCGTAGAATTTCCAAGAAGTTTGCCAAAATTCAAGGCATTTTATGGTGCGTGGAGATTAATGAATGCAGAAGATTAAGAGAAGCTTGGGACGTTCTGAAAATTGAAAATTTTCAGAGATCTGGAATTTTCAAAAAGTCAAAAAATCCAGACAATCTCATCAGTTGTAAAACATAGACTCCGCCCCTTTTTTACAATTTTGAGAATCTAAAAAAGTAAAACACTCACTGTTCCAATCTCATGTTTTGAAGAAAAATGTATCACAAATTGCTTCAAATTGCCAAATTCCTCCAGGCACTCTCTGCGAGTTTCTGAACTTCCTTGAGACGTTTGATGGCCCTCATCAGCCCGTGATGGTCTCTCTGGAACATTTTTCTTTTTCTCCTTCCACATTTTTGGTGTTTACAGACTCACCTCATATTCACTGTGGAAGATTTTTCCTTAAGTGCTTCTGTTCATGGGGCCACAGATATCTCCTTTGTTTATACCTGCGTCCACATGTTTGGCACTCAGAAGGTCTTTCGGAAATACCAAGTTTACAAGTATTTTCCCATGGAATCGATCCTAAAATATAATTCTATGTTTGATATATCAACTATGCTTCGTATGTTGAGTAGAACTCACCTTTGTTATCAATTTTAAAATAGAAAGGAATACATTAGATATTCAGAAAAATAAAAATTAGCCTCCTACACACGGTTGCTTGTGAGAACATTCT</canonical>
            <polymorphic>CCCCCAACAAATTCGAATTCATATCCAAATGTGCTGCAAAATGTGTGAATTGACGATTTTCTATCAAAACTCACTTTTTATAATGATATATTTCATACGTGGCATTCCTCCAGCCAACCAATGTTTCAGAAACTTAGTCGCCGATTATCGTCTGCCTACTTGTTCCAAATCGCATTTCATCAAATCTTGAACCGTTGGTAGTAGTGGGTTTATCAAAAACGTTGGGTTCAGCTTCCATGTGAAAAAAATCGGTTTTCTTTTAATTGATCCTAACTATCACACCACCGTAGAATTTCCAAGAAGTTTGCCAAAATTCAAGGCATTTTATGGTGCGTGGAGATTAATGAATGCAGAAGATTAAGAGAAGCTTGGGACGTTCTGAAAATTGAAAATTTTCAGAGATCTGGAATTTTCAAAAAGTCAAAAAATCCAGACAATCTCATCAGTTGTAAAACATAGACTCCGCCCCTTTTTTACAATTTTGAGAATCTAAAAAAGTRAAACACTCACTGTTCCAATCTCATGTTTTGAAGAAAAATGTATCACAAATTGCTTCAAATTGCCAAATTCCTCCAGGCACTCTCTGCGAGTTTCTGAACTTCCTTGAGACGTTTGATGGCCCTCATCAGCCCGTGATGGTCTCTCTGGAACATTTTTCTTTTTCTCCTTCCACATTTTTGGTGTTTACAGACTCACCTCATATTCACTGTGGAAGATTTTTCCTTAAGTGCTTCTGTTCATGGGGCCACAGATATCTCCTTTGTTTATACCTGCGTCCACATGTTTGGCACTCAGAAGGTCTTTCGGAAATACCAAGTTTACAAGTATTTTCCCATGGAATCGATCCTAAAATATAATTCTATGTTTGATATATCAACTATGCTTCGTATGTTGAGTAGAACTCACCTTTGTTATCAATTTTAAAATAGAAAGGAATACATTAGATATTCAGAAAAATAAAAATTAGCCTCCTACACACGGTTGCTTGTGAGAACATTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCAAGGCATTTTATGGT</pcr_primer_p1>
		<pcr_primer_p2>ATTTGAAGCAATTTGTGATACAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTCAAGGCATTTTATGGTGCGTGGAGATTAATGAATGCAGAAGATTAAGAGAAGCTTGGGACGTTCTGAAAATTGAAAATTTTCAGAGATCTGGAATTTTCAAAAAGTCAAAAAATCCAGACAATCTCATCAGTTGTAAAACATAGACTCCGCCCCTTTTTTACAATTTTGAGAATCTAAAAAAGTAAAACACTCACTGTTCCAATCTCATGTTTTGAAGAAAAATGTATCACAAATTGCTTCAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAATTCAAGGCATTTTATGGTGCGTGGAGATTAATGAATGCAGAAGATTAAGAGAAGCTTGGGACGTTCTGAAAATTGAAAATTTTCAGAGATCTGGAATTTTCAAAAAGTCAAAAAATCCAGACAATCTCATCAGTTGTAAAACATAGACTCCGCCCCTTTTTTACAATTTTGAGAATCTAAAAAAGTRAAACACTCACTGTTCCAATCTCATGTTTTGAAGAAAAATGTATCACAAATTGCTTCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36792</snp_id>
        <super_contig>c011301043.Contig1</super_contig>
        <contig_pos>22940</contig_pos>
        <strand>+</strand>
        <context>TTTTCGTTCT[A/T]TGCGGTGGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGATCTGTCGGATACTTTTCTTTTTCCTTCTTCCGGGATTTTTCGTTCT</left_flank>
        <right_flank>TGCGGTGGTTGGTTTGTCTGTTCCCGGAGCTTTAGCTATCGCTTCAACAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGTAGAAGCTTGACCAGTCAGGAGAGCCAATTGATCAGCCTCTGAAGCTGCGATGGCTGCGGCGAGATCTTCTTCCTCTGTGTTCTTCTTTTCTTCTACATTCTCTGGCTCTTTTTTATCTTTCTTCTTCTCACCCTTCGCAACTACATATTCTTGTGCAAGAATATCATAAAGCATGGAAACCGGCAGCAAAACTATGTCTGAAGCCGAACCATACTTGTCTACATGGGTTTCTAACTTTGAAAAAGTGGTCCTGAGTTTATGAATCCGCCTTTCTAAATCATACAACCTCTTTTCGCTCTTTTCTATCTTTTTCTTTGTCAGTCCTTCGAAATGCTCTTCAATATCAGCTTTAGATGCTGCAATATACTCCTCTGGAGGAAGAATTGGATGAGGCAACGGTAGAATAGCGTCACGACGGCGATACAATAGACCGTAGCATGCTTTCTGATCTGTCGGATACTTTTCTTTTTCCTTCTTCCGGGATTTTTCGTTCTTTGCGGTGGTTGGTTTGTCTGTTCCCGGAGCTTTAGCTATCGCTTCAACAGTCTAAAAAATCATCAACGAATAAACATTCATTTTTACAATATTGAAAAGGTACCTCGTCGTTATATCGATACCATTTTTGGCTGTATGGTGATTTGATCAAATCGTAGTAATGACCGCATTCTGCATTGTTTCCTTCGTGAATCGTGACAGCAAAAAGATCGTAGAACTCTGCTGGTGGTGGATTCGACTGATCGATTCTTTGGAAAGCTCTTGCTGGAATTTCTCTCGGATAAGCAATTGGAGTCTTCAGCTTTTGACGGCCCTTCGCTGTGTATTTGTATCGATTCAACTGAATAACAACGACAGGTGGTAGTTTAACATAGTCTGACTGCTTGGTAGTGCCTCCTGTCTTGTTACATTTCGAGCATTTGTAATCGTCAAGTCTCAAAGATAATGAGATAATATTTTTTGCTGAAAACGTCAGGACTCACTGTTCTTCTCCAAAATGT</canonical>
            <polymorphic>GAAGTAGAAGCTTGACCAGTCAGGAGAGCCAATTGATCAGCCTCTGAAGCTGCGATGGCTGCGGCGAGATCTTCTTCCTCTGTGTTCTTCTTTTCTTCTACATTCTCTGGCTCTTTTTTATCTTTCTTCTTCTCACCCTTCGCAACTACATATTCTTGTGCAAGAATATCATAAAGCATGGAAACCGGCAGCAAAACTATGTCTGAAGCCGAACCATACTTGTCTACATGGGTTTCTAACTTTGAAAAAGTGGTCCTGAGTTTATGAATCCGCCTTTCTAAATCATACAACCTCTTTTCGCTCTTTTCTATCTTTTTCTTTGTCAGTCCTTCGAAATGCTCTTCAATATCAGCTTTAGATGCTGCAATATACTCCTCTGGAGGAAGAATTGGATGAGGCAACGGTAGAATAGCGTCACGACGGCGATACAATAGACCGTAGCATGCTTTCTGATCTGTCGGATACTTTTCTTTTTCCTTCTTCCGGGATTTTTCGTTCTWTGCGGTGGTTGGTTTGTCTGTTCCCGGAGCTTTAGCTATCGCTTCAACAGTCTAAAAAATCATCAACGAATAAACATTCATTTTTACAATATTGAAAAGGTACCTCGTCGTTATATCGATACCATTTTTGGCTGTATGGTGATTTGATCAAATCGTAGTAATGACCGCATTCTGCATTGTTTCCTTCGTGAATCGTGACAGCAAAAAGATCGTAGAACTCTGCTGGTGGTGGATTCGACTGATCGATTCTTTGGAAAGCTCTTGCTGGAATTTCTCTCGGATAAGCAATTGGAGTCTTCAGCTTTTGACGGCCCTTCGCTGTGTATTTGTATCGATTCAACTGAATAACAACGACAGGTGGTAGTTTAACATAGTCTGACTGCTTGGTAGTGCCTCCTGTCTTGTTACATTTCGAGCATTTGTAATCGTCAAGTCTCAAAGATAATGAGATAATATTTTTTGCTGAAAACGTCAGGACTCACTGTTCTTCTCCAAAATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGCTCTTCAATATCAGCTTTA</pcr_primer_p1>
		<pcr_primer_p2>ATGAATGTTTATTCGTTGATGAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATGCTCTTCAATATCAGCTTTAGATGCTGCAATATACTCCTCTGGAGGAAGAATTGGATGAGGCAACGGTAGAATAGCGTCACGACGGCGATACAATAGACCGTAGCATGCTTTCTGATCTGTCGGATACTTTTCTTTTTCCTTCTTCCGGGATTTTTCGTTCTTTGCGGTGGTTGGTTTGTCTGTTCCCGGAGCTTTAGCTATCGCTTCAACAGTCTAAAAAATCATCAACGAATAAACATTCAT</canonical_amplicon>
		<polymorphic_amplicon>AATGCTCTTCAATATCAGCTTTAGATGCTGCAATATACTCCTCTGGAGGAAGAATTGGATGAGGCAACGGTAGAATAGCGTCACGACGGCGATACAATAGACCGTAGCATGCTTTCTGATCTGTCGGATACTTTTCTTTTTCCTTCTTCCGGGATTTTTCGTTCTWTGCGGTGGTTGGTTTGTCTGTTCCCGGAGCTTTAGCTATCGCTTCAACAGTCTAAAAAATCATCAACGAATAAACATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36793</snp_id>
        <super_contig>c011301043.Contig1</super_contig>
        <contig_pos>44522</contig_pos>
        <strand></strand>
        <context>GAATACACAA[G/A]TTATTAGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAAATAAGATTAGAGAGAAACTGATTGATTAGAACGTAGGAATACACAA</left_flank>
        <right_flank>TTATTAGATTCACAGACACCAATGGAAAATGTGTTTAAACCAAAAAACTG</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACATTGTCTTCTTCGCGACGTTCATTGCTTTCCGATCGATTCCCGCTATCATGACTTTCTAACACCGAAGGCTGATCCAGCGGAAGTGACGCAGTCGTTGGAGGTCGTGTGTCGTCGTCGTGGGGGATTCCACTGTCAATTGTTCGAGCAGAACTCGGAGCAGAATTCTATTTGAAAAATAGGATTGTTGACTTCAAAACAGGAAGAAAATTACCGTCGGAGTAAATCTGGGCAAGTTGATGGCAGGGCTTGAAGTAAGTGGTGCAGATCTTCTAGTCTTCAAAAAATAATTTTTCAGAAAATTATTGTTTATCTCACCATTCTGAATCTGGCAGTTCCTTCACCTTTCCGCAAATATGCCCTTTTCGGTTTCTGGCTGCCTTGATCCTCGTCGCCATTTTCTGATGGCAGCATCTGAAGTGTTGAACTAAAATTGTATTGCTTAGAAAAAATAAGATTAGAGAGAAACTGATTGATTAGAACGTAGGAATACACAAGTTATTAGATTCACAGACACCAATGGAAAATGTGTTTAAACCAAAAAACTGAAAAATTTTAATTAGAGCTTACTATTGGAAACGCTCAGACACTAAAAATTCGGTCTTCGATTAGGCATTTTTGCATATTTGGTAGCCGAATTGTTTGCCTTCTGCCGGTTCTTCATCTGAAGACGCAAAAGATTTCTAAGAAGAGATTGAGGTATAATTGAAGCGTTTTGGCAAGATTAAAAGAGAATTGTATGAATTCCTCAGCGGGGTGCGACGAGAGAGCACTGAAAAACCGGAGAACGCAGACATTTTATTGTACTTCCCGCCGCGGTGCGACTCGGTATTCTAGGCCACGACCGCGATAAATTGGAGGGAAACTGAGAAATTTGAAGAAATTGAAATATCAAGTCATTGTGAACTCTGAGATTCGACGGGAGAAAACTGGGAGAGAAAGGGGGTATTCTGGGAGAGAAAGGGCTTATTAAATAAATCTCAAGGAAGAGTACACAT</canonical>
            <polymorphic>CAACATTGTCTTCTTCGCGACGTTCATTGCTTTCCGATCGATTCCCGCTATCATGACTTTCTAACACCGAAGGCTGATCCAGCGGAAGTGACGCAGTCGTTGGAGGTCGTGTGTCGTCGTCGTGGGGGATTCCACTGTCAATTGTTCGAGCAGAACTCGGAGCAGAATTCTATTTGAAAAATAGGATTGTTGACTTCAAAACAGGAAGAAAATTACCGTCGGAGTAAATCTGGGCAAGTTGATGGCAGGGCTTGAAGTAAGTGGTGCAGATCTTCTAGTCTTCAAAAAATAATTTTTCAGAAAATTATTGTTTATCTCACCATTCTGAATCTGGCAGTTCCTTCACCTTTCCGCAAATATGCCCTTTTCGGTTTCTGGCTGCCTTGATCCTCGTCGCCATTTTCTGATGGCAGCATCTGAAGTGTTGAACTAAAATTGTATTGCTTAGAAAAAATAAGATTAGAGAGAAACTGATTGATTAGAACGTAGGAATACACAARTTATTAGATTCACAGACACCAATGGAAAATGTGTTTAAACCAAAAAACTGAAAAATTTTAATTAGAGCTTACTATTGGAAACGCTCAGACACTAAAAATTCGGTCTTCGATTAGGCATTTTTGCATATTTGGTAGCCGAATTGTTTGCCTTCTGCCGGTTCTTCATCTGAAGACGCAAAAGATTTCTAAGAAGAGATTGAGGTATAATTGAAGCGTTTTGGCAAGATTAAAAGAGAATTGTATGAATTCCTCAGCGGGGTGCGACGAGAGAGCACTGAAAAACCGGAGAACGCAGACATTTTATTGTACTTCCCGCCGCGGTGCGACTCGGTATTCTAGGCCACGACCGCGATAAATTGGAGGGAAACTGAGAAATTTGAAGAAATTGAAATATCAAGTCATTGTGAACTCTGAGATTCGACGGGAGAAAACTGGGAGAGAAAGGGGGTATTCTGGGAGAGAAAGGGCTTATTAAATAAATCTCAAGGAAGAGTACACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCATCTGAAGTGTTGAACTAAA</pcr_primer_p1>
		<pcr_primer_p2>AAATATGCAAAAATGCCTAATC</pcr_primer_p2>
		<pcr_amplicon_size>219</pcr_amplicon_size>
		<canonical_amplicon>AGCATCTGAAGTGTTGAACTAAAATTGTATTGCTTAGAAAAAATAAGATTAGAGAGAAACTGATTGATTAGAACGTAGGAATACACAAGTTATTAGATTCACAGACACCAATGGAAAATGTGTTTAAACCAAAAAACTGAAAAATTTTAATTAGAGCTTACTATTGGAAACGCTCAGACACTAAAAATTCGGTCTTCGATTAGGCATTTTTGCATATTT</canonical_amplicon>
		<polymorphic_amplicon>AGCATCTGAAGTGTTGAACTAAAATTGTATTGCTTAGAAAAAATAAGATTAGAGAGAAACTGATTGATTAGAACGTAGGAATACACAARTTATTAGATTCACAGACACCAATGGAAAATGTGTTTAAACCAAAAAACTGAAAAATTTTAATTAGAGCTTACTATTGGAAACGCTCAGACACTAAAAATTCGGTCTTCGATTAGGCATTTTTGCATATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36794</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>88583</contig_pos>
        <strand>+</strand>
        <context>ttagaaaatt[A/C]waaaattCaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTATCTCGCTTTCTAGACTAGCTAGAAGTAGACTTTTTGATTAGAAAATT</left_flank>
        <right_flank>TAAAATTCAATTTCGTACAAAATGCCATAGAAACCAGGTTTCTAGGCCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCCATTTCCGACTTTCCAATTTTTTTAAAACCATTATATGCTTTTCAACCTCACTTTCAGAACATCCCCAATCTCATAATACCCATTTTTCGACCCCAAAAATCAACTTCAAATTTCAAAAATCCCCAAAAAATGAGATATGATCCCTTTTTGTATATTTTTATATTTGTATTTTTGGGTATAAATTTATTAATAATGTTTTTGCAATTGCTTAACTACAAGACACAAATAAACAGTCAATGAACTAATAACGATAATAACCAATAAAGATTGTACACAGATAAGATTACAGAATGAACATTAAAGATTGCCAGGGAATAGGTCGGAAGATCAAAAATCACGAAAATTAGTGTTCTAGCTTCTCTAAGGGACGAGGAGATACAGCGCTGTGAAGAGACCCACGCAACGAGACACACTGCGTCTCTCACCTCCAAAATTCGAATCTCTGTATCTCGCTTTCTAGACTAGCTAGAAGTAGACTTTTTGATTAGAAAATTATAAAATTCAATTTCGTACAAAATGCCATAGAAACCAGGTTTCTAGGCCTTTCGTGAGCTGAGCTACAGCGATTAGTGAGACGCAGACAACGAAACTCTCTGCGTCTCTCGCCCCAATCTATGAATCGTTGTATCTCGGCTTCTAGAATACCTAGAAACTTGATTTCTGTTTAGAAAATTTTAAAATTTATTTTACTACAAAATGAAACAAAAACCGATTCTCTAGCTCTTTTGTGAGCCGAGATACAGCAATTGGGGAGACGCAGACAACGAGACCCTCTGCGTCTCTCATCTCCAGACTTCAAATCGCTGTATCTCGACTTCTAGAGCAACTAGCTGTTGATTTATGAACTTTGTGTAGATTTTTTGACGCTTGTTTCAGCCACTAACATTGAACAAAAAAATTGGGGTCGCCTGGACTCTTTTCACTGCACATGAAACGCACGGTGCTCCTTATCAGTAGTTTCGCTATAGACTATATAATGATGTTGGTTGGTAAAC</canonical>
            <polymorphic>TTTCCATTTCCGACTTTCCAATTTTTTTAAAACCATTATATGCTTTTCAACCTCACTTTCAGAACATCCCCAATCTCATAATACCCATTTTTCGACCCCAAAAATCAACTTCAAATTTCAAAAATCCCCAAAAAATGAGATATGATCCCTTTTTGTATATTTTTATATTTGTATTTTTGGGTATAAATTTATTAATAATGTTTTTGCAATTGCTTAACTACAAGACACAAATAAACAGTCAATGAACTAATAACGATAATAACCAATAAAGATTGTACACAGATAAGATTACAGAATGAACATTAAAGATTGCCAGGGAATAGGTCGGAAGATCAAAAATCACGAAAATTAGTGTTCTAGCTTCTCTAAGGGACGAGGAGATACAGCGCTGTGAAGAGACCCACGCAACGAGACACACTGCGTCTCTCACCTCCAAAATTCGAATCTCTGTATCTCGCTTTCTAGACTAGCTAGAAGTAGACTTTTTGATTAGAAAATTMTAAAATTCAATTTCGTACAAAATGCCATAGAAACCAGGTTTCTAGGCCTTTCGTGAGCTGAGCTACAGCGATTAGTGAGACGCAGACAACGAAACTCTCTGCGTCTCTCGCCCCAATCTATGAATCGTTGTATCTCGGCTTCTAGAATACCTAGAAACTTGATTTCTGTTTAGAAAATTTTAAAATTTATTTTACTACAAAATGAAACAAAAACCGATTCTCTAGCTCTTTTGTGAGCCGAGATACAGCAATTGGGGAGACGCAGACAACGAGACCCTCTGCGTCTCTCATCTCCAGACTTCAAATCGCTGTATCTCGACTTCTAGAGCAACTAGCTGTTGATTTATGAACTTTGTGTAGATTTTTTGACGCTTGTTTCAGCCACTAACATTGAACAAAAAAATTGGGGTCGCCTGGACTCTTTTCACTGCACATGAAACGCACGGTGCTCCTTATCAGTAGTTTCGCTATAGACTATATAATGATGTTGGTTGGTAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAGGGACGAGGAGATACAG</pcr_primer_p1>
		<pcr_primer_p2>AATGTTAGTGGCTGAAACAAG</pcr_primer_p2>
		<pcr_amplicon_size>526</pcr_amplicon_size>
		<canonical_amplicon>TAAGGGACGAGGAGATACAGCGCTGTGAAGAGACCCACGCAACGAGACACACTGCGTCTCTCACCTCCAAAATTCGAATCTCTGTATCTCGCTTTCTAGACTAGCTAGAAGTAGACTTTTTGATTAGAAAATTATAAAATTCAATTTCGTACAAAATGCCATAGAAACCAGGTTTCTAGGCCTTTCGTGAGCTGAGCTACAGCGATTAGTGAGACGCAGACAACGAAACTCTCTGCGTCTCTCGCCCCAATCTATGAATCGTTGTATCTCGGCTTCTAGAATACCTAGAAACTTGATTTCTGTTTAGAAAATTTTAAAATTTATTTTACTACAAAATGAAACAAAAACCGATTCTCTAGCTCTTTTGTGAGCCGAGATACAGCAATTGGGGAGACGCAGACAACGAGACCCTCTGCGTCTCTCATCTCCAGACTTCAAATCGCTGTATCTCGACTTCTAGAGCAACTAGCTGTTGATTTATGAACTTTGTGTAGATTTTTTGACGCTTGTTTCAGCCACTAACATT</canonical_amplicon>
		<polymorphic_amplicon>TAAGGGACGAGGAGATACAGCGCTGTGAAGAGACCCACGCAACGAGACACACTGCGTCTCTCACCTCCAAAATTCGAATCTCTGTATCTCGCTTTCTAGACTAGCTAGAAGTAGACTTTTTGATTAGAAAATTMTAAAATTCAATTTCGTACAAAATGCCATAGAAACCAGGTTTCTAGGCCTTTCGTGAGCTGAGCTACAGCGATTAGTGAGACGCAGACAACGAAACTCTCTGCGTCTCTCGCCCCAATCTATGAATCGTTGTATCTCGGCTTCTAGAATACCTAGAAACTTGATTTCTGTTTAGAAAATTTTAAAATTTATTTTACTACAAAATGAAACAAAAACCGATTCTCTAGCTCTTTTGTGAGCCGAGATACAGCAATTGGGGAGACGCAGACAACGAGACCCTCTGCGTCTCTCATCTCCAGACTTCAAATCGCTGTATCTCGACTTCTAGAGCAACTAGCTGTTGATTTATGAACTTTGTGTAGATTTTTTGACGCTTGTTTCAGCCACTAACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36795</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>88584</contig_pos>
        <strand>+</strand>
        <context>tagaaaattm[A/T]aaaattCaat</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATCTCGCTTTCTAGACTAGCTAGAAGTAGACTTTTTGATTAGAAAATTA</left_flank>
        <right_flank>AAAATTCAATTTCGTACAAAATGCCATAGAAACCAGGTTTCTAGGCCTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCATTTCCGACTTTCCAATTTTTTTAAAACCATTATATGCTTTTCAACCTCACTTTCAGAACATCCCCAATCTCATAATACCCATTTTTCGACCCCAAAAATCAACTTCAAATTTCAAAAATCCCCAAAAAATGAGATATGATCCCTTTTTGTATATTTTTATATTTGTATTTTTGGGTATAAATTTATTAATAATGTTTTTGCAATTGCTTAACTACAAGACACAAATAAACAGTCAATGAACTAATAACGATAATAACCAATAAAGATTGTACACAGATAAGATTACAGAATGAACATTAAAGATTGCCAGGGAATAGGTCGGAAGATCAAAAATCACGAAAATTAGTGTTCTAGCTTCTCTAAGGGACGAGGAGATACAGCGCTGTGAAGAGACCCACGCAACGAGACACACTGCGTCTCTCACCTCCAAAATTCGAATCTCTGTATCTCGCTTTCTAGACTAGCTAGAAGTAGACTTTTTGATTAGAAAATTATAAAATTCAATTTCGTACAAAATGCCATAGAAACCAGGTTTCTAGGCCTTTCGTGAGCTGAGCTACAGCGATTAGTGAGACGCAGACAACGAAACTCTCTGCGTCTCTCGCCCCAATCTATGAATCGTTGTATCTCGGCTTCTAGAATACCTAGAAACTTGATTTCTGTTTAGAAAATTTTAAAATTTATTTTACTACAAAATGAAACAAAAACCGATTCTCTAGCTCTTTTGTGAGCCGAGATACAGCAATTGGGGAGACGCAGACAACGAGACCCTCTGCGTCTCTCATCTCCAGACTTCAAATCGCTGTATCTCGACTTCTAGAGCAACTAGCTGTTGATTTATGAACTTTGTGTAGATTTTTTGACGCTTGTTTCAGCCACTAACATTGAACAAAAAAATTGGGGTCGCCTGGACTCTTTTCACTGCACATGAAACGCACGGTGCTCCTTATCAGTAGTTTCGCTATAGACTATATAATGATGTTGGTTGGTAAACA</canonical>
            <polymorphic>TTCCATTTCCGACTTTCCAATTTTTTTAAAACCATTATATGCTTTTCAACCTCACTTTCAGAACATCCCCAATCTCATAATACCCATTTTTCGACCCCAAAAATCAACTTCAAATTTCAAAAATCCCCAAAAAATGAGATATGATCCCTTTTTGTATATTTTTATATTTGTATTTTTGGGTATAAATTTATTAATAATGTTTTTGCAATTGCTTAACTACAAGACACAAATAAACAGTCAATGAACTAATAACGATAATAACCAATAAAGATTGTACACAGATAAGATTACAGAATGAACATTAAAGATTGCCAGGGAATAGGTCGGAAGATCAAAAATCACGAAAATTAGTGTTCTAGCTTCTCTAAGGGACGAGGAGATACAGCGCTGTGAAGAGACCCACGCAACGAGACACACTGCGTCTCTCACCTCCAAAATTCGAATCTCTGTATCTCGCTTTCTAGACTAGCTAGAAGTAGACTTTTTGATTAGAAAATTAWAAAATTCAATTTCGTACAAAATGCCATAGAAACCAGGTTTCTAGGCCTTTCGTGAGCTGAGCTACAGCGATTAGTGAGACGCAGACAACGAAACTCTCTGCGTCTCTCGCCCCAATCTATGAATCGTTGTATCTCGGCTTCTAGAATACCTAGAAACTTGATTTCTGTTTAGAAAATTTTAAAATTTATTTTACTACAAAATGAAACAAAAACCGATTCTCTAGCTCTTTTGTGAGCCGAGATACAGCAATTGGGGAGACGCAGACAACGAGACCCTCTGCGTCTCTCATCTCCAGACTTCAAATCGCTGTATCTCGACTTCTAGAGCAACTAGCTGTTGATTTATGAACTTTGTGTAGATTTTTTGACGCTTGTTTCAGCCACTAACATTGAACAAAAAAATTGGGGTCGCCTGGACTCTTTTCACTGCACATGAAACGCACGGTGCTCCTTATCAGTAGTTTCGCTATAGACTATATAATGATGTTGGTTGGTAAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAGGGACGAGGAGATACAG</pcr_primer_p1>
		<pcr_primer_p2>AATGTTAGTGGCTGAAACAAG</pcr_primer_p2>
		<pcr_amplicon_size>526</pcr_amplicon_size>
		<canonical_amplicon>TAAGGGACGAGGAGATACAGCGCTGTGAAGAGACCCACGCAACGAGACACACTGCGTCTCTCACCTCCAAAATTCGAATCTCTGTATCTCGCTTTCTAGACTAGCTAGAAGTAGACTTTTTGATTAGAAAATTATAAAATTCAATTTCGTACAAAATGCCATAGAAACCAGGTTTCTAGGCCTTTCGTGAGCTGAGCTACAGCGATTAGTGAGACGCAGACAACGAAACTCTCTGCGTCTCTCGCCCCAATCTATGAATCGTTGTATCTCGGCTTCTAGAATACCTAGAAACTTGATTTCTGTTTAGAAAATTTTAAAATTTATTTTACTACAAAATGAAACAAAAACCGATTCTCTAGCTCTTTTGTGAGCCGAGATACAGCAATTGGGGAGACGCAGACAACGAGACCCTCTGCGTCTCTCATCTCCAGACTTCAAATCGCTGTATCTCGACTTCTAGAGCAACTAGCTGTTGATTTATGAACTTTGTGTAGATTTTTTGACGCTTGTTTCAGCCACTAACATT</canonical_amplicon>
		<polymorphic_amplicon>TAAGGGACGAGGAGATACAGCGCTGTGAAGAGACCCACGCAACGAGACACACTGCGTCTCTCACCTCCAAAATTCGAATCTCTGTATCTCGCTTTCTAGACTAGCTAGAAGTAGACTTTTTGATTAGAAAATTAWAAAATTCAATTTCGTACAAAATGCCATAGAAACCAGGTTTCTAGGCCTTTCGTGAGCTGAGCTACAGCGATTAGTGAGACGCAGACAACGAAACTCTCTGCGTCTCTCGCCCCAATCTATGAATCGTTGTATCTCGGCTTCTAGAATACCTAGAAACTTGATTTCTGTTTAGAAAATTTTAAAATTTATTTTACTACAAAATGAAACAAAAACCGATTCTCTAGCTCTTTTGTGAGCCGAGATACAGCAATTGGGGAGACGCAGACAACGAGACCCTCTGCGTCTCTCATCTCCAGACTTCAAATCGCTGTATCTCGACTTCTAGAGCAACTAGCTGTTGATTTATGAACTTTGTGTAGATTTTTTGACGCTTGTTTCAGCCACTAACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36796</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>101095</contig_pos>
        <strand>+</strand>
        <context>GCAAAGCCCC[C/G]CACGACTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCC</left_flank>
        <right_flank>CACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATCCGAAATTCCATTTTTTCCGATAAATTGGAATTTCATAATTTTTGAAAACCCCGAAATTCTCAACTTTCTGGGCCCTCTCCTATTTTCGCAATTTTTCGATTTCCGCTTTTTGAAATTTTCCTGAAATATCACATTTTCAGAACCAACAAAAATTTCTGAATTTCTGAATTTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAATTTCTGAATTTCAAAATGCTCAAAATTTCAAAATAATGAAATTCGAAGAATCCAAAAAAAAAGCCTAAAATTAAAAAATCCTAAAAATCCAAAAATCTCGAAATTCCAAAAAATCCCGAAATTCTGAAAAATCCAAAAAATTCGGAATATTTTCAAATTTTCTTCTAATTCCTAATCCACTGATCATTCTCCAAATTTTCAAAAAAGTACAGTAATCCAAAGAAAAACTGTGAAATCATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCCAGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATT</canonical>
            <polymorphic>AAATCCGAAATTCCATTTTTTCCGATAAATTGGAATTTCATAATTTTTGAAAACCCCGAAATTCTCAACTTTCTGGGCCCTCTCCTATTTTCGCAATTTTTCGATTTCCGCTTTTTGAAATTTTCCTGAAATATCACATTTTCAGAACCAACAAAAATTTCTGAATTTCTGAATTTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAATTTCTGAATTTCAAAATGCTCAAAATTTCAAAATAATGAAATTCGAAGAATCCAAAAAAAAAGCCTAAAATTAAAAAATCCTAAAAATCCAAAAATCTCGAAATTCCAAAAAATCCCGAAATTCTGAAAAATCCAAAAAATTCGGAATATTTTCAAATTTTCTTCTAATTCCTAATCCACTGATCATTCTCCAAATTTTCAAAAAAGTACAGTAATCCAAAGAAAAACTGTGAAATCATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCSCACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCCAGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>256 136 132 108 101 84 53 36 19 15 13 12 12 12 7 2 2</canonical_bands>
                <polymorphic_bands>256 136 132 108 101 84 53 36 19 15 14 13 12 12 7 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCATTCTCCAAATTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCCCAAAATGTGTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCATTCTCCAAATTTTCAAAAAAGTACAGTAATCCAAAGAAAAACTGTGAAATCATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>GATCATTCTCCAAATTTTCAAAAAAGTACAGTAATCCAAAGAAAAACTGTGAAATCATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCSCACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36797</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>101168</contig_pos>
        <strand>+</strand>
        <context>AACGCTCAAT[G/T]TTTGACTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAAT</left_flank>
        <right_flank>TTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGCCCTCTCCTATTTTCGCAATTTTTCGATTTCCGCTTTTTGAAATTTTCCTGAAATATCACATTTTCAGAACCAACAAAAATTTCTGAATTTCTGAATTTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAATTTCTGAATTTCAAAATGCTCAAAATTTCAAAATAATGAAATTCGAAGAATCCAAAAAAAAAGCCTAAAATTAAAAAATCCTAAAAATCCAAAAATCTCGAAATTCCAAAAAATCCCGAAATTCTGAAAAATCCAAAAAATTCGGAATATTTTCAAATTTTCTTCTAATTCCTAATCCACTGATCATTCTCCAAATTTTCAAAAAAGTACAGTAATCCAAAGAAAAACTGTGAAATCATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCCAGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATTTCAAAAAAATTTTTTTTAGTTTTTCATGGGAGTAGATTTTTTTAAAATAATCATTTTTATTTTTTTAAATAAC</canonical>
            <polymorphic>TGGGCCCTCTCCTATTTTCGCAATTTTTCGATTTCCGCTTTTTGAAATTTTCCTGAAATATCACATTTTCAGAACCAACAAAAATTTCTGAATTTCTGAATTTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAATTTCTGAATTTCAAAATGCTCAAAATTTCAAAATAATGAAATTCGAAGAATCCAAAAAAAAAGCCTAAAATTAAAAAATCCTAAAAATCCAAAAATCTCGAAATTCCAAAAAATCCCGAAATTCTGAAAAATCCAAAAAATTCGGAATATTTTCAAATTTTCTTCTAATTCCTAATCCACTGATCATTCTCCAAATTTTCAAAAAAGTACAGTAATCCAAAGAAAAACTGTGAAATCATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATKTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCCAGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATTTCAAAAAAATTTTTTTTAGTTTTTCATGGGAGTAGATTTTTTTAAAATAATCATTTTTATTTTTTTAAATAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCATTCTCCAAATTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCCCAAAATGTGTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCATTCTCCAAATTTTCAAAAAAGTACAGTAATCCAAAGAAAAACTGTGAAATCATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>GATCATTCTCCAAATTTTCAAAAAAGTACAGTAATCCAAAGAAAAACTGTGAAATCATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATKTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36798</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>101199</contig_pos>
        <strand>+</strand>
        <context>TTTTCAGTTT[A/T]AAACCACATA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTT</left_flank>
        <right_flank>AAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCGCTTTTTGAAATTTTCCTGAAATATCACATTTTCAGAACCAACAAAAATTTCTGAATTTCTGAATTTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAATTTCTGAATTTCAAAATGCTCAAAATTTCAAAATAATGAAATTCGAAGAATCCAAAAAAAAAGCCTAAAATTAAAAAATCCTAAAAATCCAAAAATCTCGAAATTCCAAAAAATCCCGAAATTCTGAAAAATCCAAAAAATTCGGAATATTTTCAAATTTTCTTCTAATTCCTAATCCACTGATCATTCTCCAAATTTTCAAAAAAGTACAGTAATCCAAAGAAAAACTGTGAAATCATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCCAGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATTTCAAAAAAATTTTTTTTAGTTTTTCATGGGAGTAGATTTTTTTAAAATAATCATTTTTATTTTTTTAAATAACTATTTAACTGGGATTCCCTCAATTATTTTTT</canonical>
            <polymorphic>TTTCCGCTTTTTGAAATTTTCCTGAAATATCACATTTTCAGAACCAACAAAAATTTCTGAATTTCTGAATTTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAATTTCTGAATTTCAAAATGCTCAAAATTTCAAAATAATGAAATTCGAAGAATCCAAAAAAAAAGCCTAAAATTAAAAAATCCTAAAAATCCAAAAATCTCGAAATTCCAAAAAATCCCGAAATTCTGAAAAATCCAAAAAATTCGGAATATTTTCAAATTTTCTTCTAATTCCTAATCCACTGATCATTCTCCAAATTTTCAAAAAAGTACAGTAATCCAAAGAAAAACTGTGAAATCATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTWAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCCAGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATTTCAAAAAAATTTTTTTTAGTTTTTCATGGGAGTAGATTTTTTTAAAATAATCATTTTTATTTTTTTAAATAACTATTTAACTGGGATTCCCTCAATTATTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGACGGAAACTCTGGTCTATG</pcr_primer_p1>
		<pcr_primer_p2>TGCATATACAATAGAGGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>AGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCA</canonical_amplicon>
		<polymorphic_amplicon>AGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTWAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36799</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>101213</contig_pos>
        <strand>+</strand>
        <context>CCACATATTT[A/T]KYCCCAAGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTT</left_flank>
        <right_flank>ACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTCCTGAAATATCACATTTTCAGAACCAACAAAAATTTCTGAATTTCTGAATTTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAATTTCTGAATTTCAAAATGCTCAAAATTTCAAAATAATGAAATTCGAAGAATCCAAAAAAAAAGCCTAAAATTAAAAAATCCTAAAAATCCAAAAATCTCGAAATTCCAAAAAATCCCGAAATTCTGAAAAATCCAAAAAATTCGGAATATTTTCAAATTTTCTTCTAATTCCTAATCCACTGATCATTCTCCAAATTTTCAAAAAAGTACAGTAATCCAAAGAAAAACTGTGAAATCATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCCAGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATTTCAAAAAAATTTTTTTTAGTTTTTCATGGGAGTAGATTTTTTTAAAATAATCATTTTTATTTTTTTAAATAACTATTTAACTGGGATTCCCTCAATTATTTTTTTTTCAGAAATTCCA</canonical>
            <polymorphic>AATTTTCCTGAAATATCACATTTTCAGAACCAACAAAAATTTCTGAATTTCTGAATTTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAATTTCTGAATTTCAAAATGCTCAAAATTTCAAAATAATGAAATTCGAAGAATCCAAAAAAAAAGCCTAAAATTAAAAAATCCTAAAAATCCAAAAATCTCGAAATTCCAAAAAATCCCGAAATTCTGAAAAATCCAAAAAATTCGGAATATTTTCAAATTTTCTTCTAATTCCTAATCCACTGATCATTCTCCAAATTTTCAAAAAAGTACAGTAATCCAAAGAAAAACTGTGAAATCATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTWACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCCAGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATTTCAAAAAAATTTTTTTTAGTTTTTCATGGGAGTAGATTTTTTTAAAATAATCATTTTTATTTTTTTAAATAACTATTTAACTGGGATTCCCTCAATTATTTTTTTTTCAGAAATTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>332 311 166 84 41 31 23 12</canonical_bands>
                <polymorphic_bands>416 311 166 41 31 23 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACGGAAACTCTGGTCTATG</pcr_primer_p1>
		<pcr_primer_p2>TGCATATACAATAGAGGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>AGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCA</canonical_amplicon>
		<polymorphic_amplicon>AGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTWACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36800</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>101214</contig_pos>
        <strand>+</strand>
        <context>CACATATTTW[G/T]YCCCAAGACA</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTA</left_flank>
        <right_flank>CCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTCCTGAAATATCACATTTTCAGAACCAACAAAAATTTCTGAATTTCTGAATTTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAATTTCTGAATTTCAAAATGCTCAAAATTTCAAAATAATGAAATTCGAAGAATCCAAAAAAAAAGCCTAAAATTAAAAAATCCTAAAAATCCAAAAATCTCGAAATTCCAAAAAATCCCGAAATTCTGAAAAATCCAAAAAATTCGGAATATTTTCAAATTTTCTTCTAATTCCTAATCCACTGATCATTCTCCAAATTTTCAAAAAAGTACAGTAATCCAAAGAAAAACTGTGAAATCATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCCAGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATTTCAAAAAAATTTTTTTTAGTTTTTCATGGGAGTAGATTTTTTTAAAATAATCATTTTTATTTTTTTAAATAACTATTTAACTGGGATTCCCTCAATTATTTTTTTTTCAGAAATTCCAA</canonical>
            <polymorphic>ATTTTCCTGAAATATCACATTTTCAGAACCAACAAAAATTTCTGAATTTCTGAATTTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAATTTCTGAATTTCAAAATGCTCAAAATTTCAAAATAATGAAATTCGAAGAATCCAAAAAAAAAGCCTAAAATTAAAAAATCCTAAAAATCCAAAAATCTCGAAATTCCAAAAAATCCCGAAATTCTGAAAAATCCAAAAAATTCGGAATATTTTCAAATTTTCTTCTAATTCCTAATCCACTGATCATTCTCCAAATTTTCAAAAAAGTACAGTAATCCAAAGAAAAACTGTGAAATCATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAKCCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCCAGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATTTCAAAAAAATTTTTTTTAGTTTTTCATGGGAGTAGATTTTTTTAAAATAATCATTTTTATTTTTTTAAATAACTATTTAACTGGGATTCCCTCAATTATTTTTTTTTCAGAAATTCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>332 311 165 84 42 31 23 12</canonical_bands>
                <polymorphic_bands>416 311 165 42 31 23 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACGGAAACTCTGGTCTATG</pcr_primer_p1>
		<pcr_primer_p2>TGCATATACAATAGAGGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>AGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCA</canonical_amplicon>
		<polymorphic_amplicon>AGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAKCCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36801</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>101215</contig_pos>
        <strand>+</strand>
        <context>ACATATTTWK[C/T]CCCAAGACAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAA</left_flank>
        <right_flank>CCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCCTGAAATATCACATTTTCAGAACCAACAAAAATTTCTGAATTTCTGAATTTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAATTTCTGAATTTCAAAATGCTCAAAATTTCAAAATAATGAAATTCGAAGAATCCAAAAAAAAAGCCTAAAATTAAAAAATCCTAAAAATCCAAAAATCTCGAAATTCCAAAAAATCCCGAAATTCTGAAAAATCCAAAAAATTCGGAATATTTTCAAATTTTCTTCTAATTCCTAATCCACTGATCATTCTCCAAATTTTCAAAAAAGTACAGTAATCCAAAGAAAAACTGTGAAATCATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCCAGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATTTCAAAAAAATTTTTTTTAGTTTTTCATGGGAGTAGATTTTTTTAAAATAATCATTTTTATTTTTTTAAATAACTATTTAACTGGGATTCCCTCAATTATTTTTTTTTCAGAAATTCCAAT</canonical>
            <polymorphic>TTTTCCTGAAATATCACATTTTCAGAACCAACAAAAATTTCTGAATTTCTGAATTTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAATTTCTGAATTTCAAAATGCTCAAAATTTCAAAATAATGAAATTCGAAGAATCCAAAAAAAAAGCCTAAAATTAAAAAATCCTAAAAATCCAAAAATCTCGAAATTCCAAAAAATCCCGAAATTCTGAAAAATCCAAAAAATTCGGAATATTTTCAAATTTTCTTCTAATTCCTAATCCACTGATCATTCTCCAAATTTTCAAAAAAGTACAGTAATCCAAAGAAAAACTGTGAAATCATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAAYCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCCAGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATTTCAAAAAAATTTTTTTTAGTTTTTCATGGGAGTAGATTTTTTTAAAATAATCATTTTTATTTTTTTAAATAACTATTTAACTGGGATTCCCTCAATTATTTTTTTTTCAGAAATTCCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGACGGAAACTCTGGTCTATG</pcr_primer_p1>
		<pcr_primer_p2>TGCATATACAATAGAGGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>AGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCA</canonical_amplicon>
		<polymorphic_amplicon>AGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAAYCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36802</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>101249</contig_pos>
        <strand>+</strand>
        <context>TCGAAAAAAA[A/T]WTTTTTTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAA</left_flank>
        <right_flank>TTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTCTGAATTTCTGAATTTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAATTTCTGAATTTCAAAATGCTCAAAATTTCAAAATAATGAAATTCGAAGAATCCAAAAAAAAAGCCTAAAATTAAAAAATCCTAAAAATCCAAAAATCTCGAAATTCCAAAAAATCCCGAAATTCTGAAAAATCCAAAAAATTCGGAATATTTTCAAATTTTCTTCTAATTCCTAATCCACTGATCATTCTCCAAATTTTCAAAAAAGTACAGTAATCCAAAGAAAAACTGTGAAATCATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCCAGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATTTCAAAAAAATTTTTTTTAGTTTTTCATGGGAGTAGATTTTTTTAAAATAATCATTTTTATTTTTTTAAATAACTATTTAACTGGGATTCCCTCAATTATTTTTTTTTCAGAAATTCCAATTTCTTATTTAAAAATTGAAAAATCTGAATTCCTG</canonical>
            <polymorphic>AAATTTCTGAATTTCTGAATTTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAATTTCTGAATTTCAAAATGCTCAAAATTTCAAAATAATGAAATTCGAAGAATCCAAAAAAAAAGCCTAAAATTAAAAAATCCTAAAAATCCAAAAATCTCGAAATTCCAAAAAATCCCGAAATTCTGAAAAATCCAAAAAATTCGGAATATTTTCAAATTTTCTTCTAATTCCTAATCCACTGATCATTCTCCAAATTTTCAAAAAAGTACAGTAATCCAAAGAAAAACTGTGAAATCATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAAWTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCCAGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATTTCAAAAAAATTTTTTTTAGTTTTTCATGGGAGTAGATTTTTTTAAAATAATCATTTTTATTTTTTTAAATAACTATTTAACTGGGATTCCCTCAATTATTTTTTTTTCAGAAATTCCAATTTCTTATTTAAAAATTGAAAAATCTGAATTCCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>233 232 104 81 62 38 35 24 19 18 17 17 16 13 11 9 8 8 8 8 8 8 8 7 7 1</canonical_bands>
                <polymorphic_bands>233 232 104 81 62 38 37 35 19 18 17 17 16 11 9 8 8 8 8 8 8 8 7 7 1</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>143 122 89 86 85 57 33 29 27 26 24 19 18 18 17 17 16 15 14 13 13 11 11 11 9 8 8 8 8 8 8 8 7 7 6 1</canonical_bands>
                <polymorphic_bands>143 122 89 86 85 57 33 29 27 26 24 24 19 18 18 17 17 16 15 14 13 11 11 9 8 8 8 8 8 8 8 7 7 6 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACGGAAACTCTGGTCTATG</pcr_primer_p1>
		<pcr_primer_p2>TGCATATACAATAGAGGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>AGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCA</canonical_amplicon>
		<polymorphic_amplicon>AGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAAWTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36803</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>101250</contig_pos>
        <strand></strand>
        <context>CGAAAAAAAW[T/A]TTTTTTCAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAAT</left_flank>
        <right_flank>TTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTCTGAATTTCTGAATTTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAATTTCTGAATTTCAAAATGCTCAAAATTTCAAAATAATGAAATTCGAAGAATCCAAAAAAAAAGCCTAAAATTAAAAAATCCTAAAAATCCAAAAATCTCGAAATTCCAAAAAATCCCGAAATTCTGAAAAATCCAAAAAATTCGGAATATTTTCAAATTTTCTTCTAATTCCTAATCCACTGATCATTCTCCAAATTTTCAAAAAAGTACAGTAATCCAAAGAAAAACTGTGAAATCATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCCAGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATTTCAAAAAAATTTTTTTTAGTTTTTCATGGGAGTAGATTTTTTTAAAATAATCATTTTTATTTTTTTAAATAACTATTTAACTGGGATTCCCTCAATTATTTTTTTTTCAGAAATTCCAATTTCTTATTTAAAAATTGAAAAATCTGAATTCCTGA</canonical>
            <polymorphic>AATTTCTGAATTTCTGAATTTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAATTTCTGAATTTCAAAATGCTCAAAATTTCAAAATAATGAAATTCGAAGAATCCAAAAAAAAAGCCTAAAATTAAAAAATCCTAAAAATCCAAAAATCTCGAAATTCCAAAAAATCCCGAAATTCTGAAAAATCCAAAAAATTCGGAATATTTTCAAATTTTCTTCTAATTCCTAATCCACTGATCATTCTCCAAATTTTCAAAAAAGTACAGTAATCCAAAGAAAAACTGTGAAATCATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATWTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCCAGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATTTCAAAAAAATTTTTTTTAGTTTTTCATGGGAGTAGATTTTTTTAAAATAATCATTTTTATTTTTTTAAATAACTATTTAACTGGGATTCCCTCAATTATTTTTTTTTCAGAAATTCCAATTTCTTATTTAAAAATTGAAAAATCTGAATTCCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>233 232 104 81 62 38 35 24 19 18 17 17 16 13 11 9 9 8 8 8 8 8 8 7 7</canonical_bands>
                <polymorphic_bands>233 232 104 81 62 38 37 35 19 18 17 17 16 11 9 9 8 8 8 8 8 8 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>143 122 89 86 85 57 33 29 27 26 24 19 18 18 17 17 16 15 14 13 13 11 11 11 9 9 8 8 8 8 8 8 7 7 6 0</canonical_bands>
                <polymorphic_bands>143 122 89 86 85 57 33 29 27 26 24 24 19 18 18 17 17 16 15 14 13 11 11 9 9 8 8 8 8 8 8 7 7 6 0</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACGGAAACTCTGGTCTATG</pcr_primer_p1>
		<pcr_primer_p2>TGCATATACAATAGAGGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>AGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCA</canonical_amplicon>
		<polymorphic_amplicon>AGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATWTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36804</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>101265</contig_pos>
        <strand></strand>
        <context>TTCAATTTTT[G/T]CCCAAAATTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTT</left_flank>
        <right_flank>CCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAATTTCTGAATTTCAAAATGCTCAAAATTTCAAAATAATGAAATTCGAAGAATCCAAAAAAAAAGCCTAAAATTAAAAAATCCTAAAAATCCAAAAATCTCGAAATTCCAAAAAATCCCGAAATTCTGAAAAATCCAAAAAATTCGGAATATTTTCAAATTTTCTTCTAATTCCTAATCCACTGATCATTCTCCAAATTTTCAAAAAAGTACAGTAATCCAAAGAAAAACTGTGAAATCATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCCAGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATTTCAAAAAAATTTTTTTTAGTTTTTCATGGGAGTAGATTTTTTTAAAATAATCATTTTTATTTTTTTAAATAACTATTTAACTGGGATTCCCTCAATTATTTTTTTTTCAGAAATTCCAATTTCTTATTTAAAAATTGAAAAATCTGAATTCCTGAGATTCTGCGATTCAG</canonical>
            <polymorphic>GAATTTCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAATTTCTGAATTTCAAAATGCTCAAAATTTCAAAATAATGAAATTCGAAGAATCCAAAAAAAAAGCCTAAAATTAAAAAATCCTAAAAATCCAAAAATCTCGAAATTCCAAAAAATCCCGAAATTCTGAAAAATCCAAAAAATTCGGAATATTTTCAAATTTTCTTCTAATTCCTAATCCACTGATCATTCTCCAAATTTTCAAAAAAGTACAGTAATCCAAAGAAAAACTGTGAAATCATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTKCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCCAGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATTTCAAAAAAATTTTTTTTAGTTTTTCATGGGAGTAGATTTTTTTAAAATAATCATTTTTATTTTTTTAAATAACTATTTAACTGGGATTCCCTCAATTATTTTTTTTTCAGAAATTCCAATTTCTTATTTAAAAATTGAAAAATCTGAATTCCTGAGATTCTGCGATTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGACGGAAACTCTGGTCTATG</pcr_primer_p1>
		<pcr_primer_p2>TGCATATACAATAGAGGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>AGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCA</canonical_amplicon>
		<polymorphic_amplicon>AGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTKCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36805</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>101299</contig_pos>
        <strand>+</strand>
        <context>AGTTTTTTAA[A/G]CCAATTTCWC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAA</left_flank>
        <right_flank>CCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTCTGAATTTCTGAATTTCAAAATGCTCAAAATTTCAAAATAATGAAATTCGAAGAATCCAAAAAAAAAGCCTAAAATTAAAAAATCCTAAAAATCCAAAAATCTCGAAATTCCAAAAAATCCCGAAATTCTGAAAAATCCAAAAAATTCGGAATATTTTCAAATTTTCTTCTAATTCCTAATCCACTGATCATTCTCCAAATTTTCAAAAAAGTACAGTAATCCAAAGAAAAACTGTGAAATCATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCCAGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATTTCAAAAAAATTTTTTTTAGTTTTTCATGGGAGTAGATTTTTTTAAAATAATCATTTTTATTTTTTTAAATAACTATTTAACTGGGATTCCCTCAATTATTTTTTTTTCAGAAATTCCAATTTCTTATTTAAAAATTGAAAAATCTGAATTCCTGAGATTCTGCGATTCAGAGATTCAGAGATTCCGAAATTCTGAAATTCTGAA</canonical>
            <polymorphic>AATTCTGAATTTCTGAATTTCAAAATGCTCAAAATTTCAAAATAATGAAATTCGAAGAATCCAAAAAAAAAGCCTAAAATTAAAAAATCCTAAAAATCCAAAAATCTCGAAATTCCAAAAAATCCCGAAATTCTGAAAAATCCAAAAAATTCGGAATATTTTCAAATTTTCTTCTAATTCCTAATCCACTGATCATTCTCCAAATTTTCAAAAAAGTACAGTAATCCAAAGAAAAACTGTGAAATCATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAARCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCCAGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATTTCAAAAAAATTTTTTTTAGTTTTTCATGGGAGTAGATTTTTTTAAAATAATCATTTTTATTTTTTTAAATAACTATTTAACTGGGATTCCCTCAATTATTTTTTTTTCAGAAATTCCAATTTCTTATTTAAAAATTGAAAAATCTGAATTCCTGAGATTCTGCGATTCAGAGATTCAGAGATTCCGAAATTCTGAAATTCTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>500 219 146 72 63</canonical_bands>
                <polymorphic_bands>646 219 72 63</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGACACATTTTGGGAATTTT</pcr_primer_p1>
		<pcr_primer_p2>ATCAATAATTTCTGTTTTCGTATG</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>AAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGAT</canonical_amplicon>
		<polymorphic_amplicon>AAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAARCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36806</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>101308</contig_pos>
        <strand>+</strand>
        <context>ARCCAATTTC[A/T]CTACTATACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTC</left_flank>
        <right_flank>CTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTGAATTTCAAAATGCTCAAAATTTCAAAATAATGAAATTCGAAGAATCCAAAAAAAAAGCCTAAAATTAAAAAATCCTAAAAATCCAAAAATCTCGAAATTCCAAAAAATCCCGAAATTCTGAAAAATCCAAAAAATTCGGAATATTTTCAAATTTTCTTCTAATTCCTAATCCACTGATCATTCTCCAAATTTTCAAAAAAGTACAGTAATCCAAAGAAAAACTGTGAAATCATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCCAGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATTTCAAAAAAATTTTTTTTAGTTTTTCATGGGAGTAGATTTTTTTAAAATAATCATTTTTATTTTTTTAAATAACTATTTAACTGGGATTCCCTCAATTATTTTTTTTTCAGAAATTCCAATTTCTTATTTAAAAATTGAAAAATCTGAATTCCTGAGATTCTGCGATTCAGAGATTCAGAGATTCCGAAATTCTGAAATTCTGAAATTCTAAAA</canonical>
            <polymorphic>TTTCTGAATTTCAAAATGCTCAAAATTTCAAAATAATGAAATTCGAAGAATCCAAAAAAAAAGCCTAAAATTAAAAAATCCTAAAAATCCAAAAATCTCGAAATTCCAAAAAATCCCGAAATTCTGAAAAATCCAAAAAATTCGGAATATTTTCAAATTTTCTTCTAATTCCTAATCCACTGATCATTCTCCAAATTTTCAAAAAAGTACAGTAATCCAAAGAAAAACTGTGAAATCATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCWCTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCCAGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATTTCAAAAAAATTTTTTTTAGTTTTTCATGGGAGTAGATTTTTTTAAAATAATCATTTTTATTTTTTTAAATAACTATTTAACTGGGATTCCCTCAATTATTTTTTTTTCAGAAATTCCAATTTCTTATTTAAAAATTGAAAAATCTGAATTCCTGAGATTCTGCGATTCAGAGATTCAGAGATTCCGAAATTCTGAAATTCTGAAATTCTAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>228 179 132 108 101 84 53 36 19 13 12 12 12 7 2 2</canonical_bands>
                <polymorphic_bands>228 179 132 108 101 97 53 36 19 12 12 12 7 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGACACATTTTGGGAATTTT</pcr_primer_p1>
		<pcr_primer_p2>ATCAATAATTTCTGTTTTCGTATG</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>AAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGAT</canonical_amplicon>
		<polymorphic_amplicon>AAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCWCTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36807</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>101320</contig_pos>
        <strand>+</strand>
        <context>TACTATACTA[C/T]ACATTTTAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTA</left_flank>
        <right_flank>ACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATGCTCAAAATTTCAAAATAATGAAATTCGAAGAATCCAAAAAAAAAGCCTAAAATTAAAAAATCCTAAAAATCCAAAAATCTCGAAATTCCAAAAAATCCCGAAATTCTGAAAAATCCAAAAAATTCGGAATATTTTCAAATTTTCTTCTAATTCCTAATCCACTGATCATTCTCCAAATTTTCAAAAAAGTACAGTAATCCAAAGAAAAACTGTGAAATCATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCCAGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATTTCAAAAAAATTTTTTTTAGTTTTTCATGGGAGTAGATTTTTTTAAAATAATCATTTTTATTTTTTTAAATAACTATTTAACTGGGATTCCCTCAATTATTTTTTTTTCAGAAATTCCAATTTCTTATTTAAAAATTGAAAAATCTGAATTCCTGAGATTCTGCGATTCAGAGATTCAGAGATTCCGAAATTCTGAAATTCTGAAATTCTAAAATTCTGTAATTCT</canonical>
            <polymorphic>AAAATGCTCAAAATTTCAAAATAATGAAATTCGAAGAATCCAAAAAAAAAGCCTAAAATTAAAAAATCCTAAAAATCCAAAAATCTCGAAATTCCAAAAAATCCCGAAATTCTGAAAAATCCAAAAAATTCGGAATATTTTCAAATTTTCTTCTAATTCCTAATCCACTGATCATTCTCCAAATTTTCAAAAAAGTACAGTAATCCAAAGAAAAACTGTGAAATCATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTAYACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCCAGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATTTCAAAAAAATTTTTTTTAGTTTTTCATGGGAGTAGATTTTTTTAAAATAATCATTTTTATTTTTTTAAATAACTATTTAACTGGGATTCCCTCAATTATTTTTTTTTCAGAAATTCCAATTTCTTATTTAAAAATTGAAAAATCTGAATTCCTGAGATTCTGCGATTCAGAGATTCAGAGATTCCGAAATTCTGAAATTCTGAAATTCTAAAATTCTGTAATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>240 167 132 108 101 84 53 36 19 13 12 12 12 7 2 2</canonical_bands>
                <polymorphic_bands>240 167 132 114 108 84 53 36 19 12 12 12 7 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGACACATTTTGGGAATTTT</pcr_primer_p1>
		<pcr_primer_p2>ATCAATAATTTCTGTTTTCGTATG</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>AAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGAT</canonical_amplicon>
		<polymorphic_amplicon>AAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTAYACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36808</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>101400</contig_pos>
        <strand>+</strand>
        <context>TATTATTCTC[C/T]ATTTCTCTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTC</left_flank>
        <right_flank>ATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCTCGAAATTCCAAAAAATCCCGAAATTCTGAAAAATCCAAAAAATTCGGAATATTTTCAAATTTTCTTCTAATTCCTAATCCACTGATCATTCTCCAAATTTTCAAAAAAGTACAGTAATCCAAAGAAAAACTGTGAAATCATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCCAGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATTTCAAAAAAATTTTTTTTAGTTTTTCATGGGAGTAGATTTTTTTAAAATAATCATTTTTATTTTTTTAAATAACTATTTAACTGGGATTCCCTCAATTATTTTTTTTTCAGAAATTCCAATTTCTTATTTAAAAATTGAAAAATCTGAATTCCTGAGATTCTGCGATTCAGAGATTCAGAGATTCCGAAATTCTGAAATTCTGAAATTCTAAAATTCTGTAATTCTAACATACTGAAACTCAAAAATTCAAAAATTCAAAAATTCGAAAACCTAAAAATTCTAAAATGCTAAAAAAAATCTTTGAA</canonical>
            <polymorphic>AAATCTCGAAATTCCAAAAAATCCCGAAATTCTGAAAAATCCAAAAAATTCGGAATATTTTCAAATTTTCTTCTAATTCCTAATCCACTGATCATTCTCCAAATTTTCAAAAAAGTACAGTAATCCAAAGAAAAACTGTGAAATCATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCYATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCCAGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATTTCAAAAAAATTTTTTTTAGTTTTTCATGGGAGTAGATTTTTTTAAAATAATCATTTTTATTTTTTTAAATAACTATTTAACTGGGATTCCCTCAATTATTTTTTTTTCAGAAATTCCAATTTCTTATTTAAAAATTGAAAAATCTGAATTCCTGAGATTCTGCGATTCAGAGATTCAGAGATTCCGAAATTCTGAAATTCTGAAATTCTAAAATTCTGTAATTCTAACATACTGAAACTCAAAAATTCAAAAATTCAAAAATTCGAAAACCTAAAAATTCTAAAATGCTAAAAAAAATCTTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGACACATTTTGGGAATTTT</pcr_primer_p1>
		<pcr_primer_p2>ATCAATAATTTCTGTTTTCGTATG</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>AAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGAT</canonical_amplicon>
		<polymorphic_amplicon>AAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCYATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36809</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>101449</contig_pos>
        <strand>+</strand>
        <context>TTTTCAATTT[C/T]TGTTTTCATA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTT</left_flank>
        <right_flank>TGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGAATATTTTCAAATTTTCTTCTAATTCCTAATCCACTGATCATTCTCCAAATTTTCAAAAAAGTACAGTAATCCAAAGAAAAACTGTGAAATCATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCCAGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATTTCAAAAAAATTTTTTTTAGTTTTTCATGGGAGTAGATTTTTTTAAAATAATCATTTTTATTTTTTTAAATAACTATTTAACTGGGATTCCCTCAATTATTTTTTTTTCAGAAATTCCAATTTCTTATTTAAAAATTGAAAAATCTGAATTCCTGAGATTCTGCGATTCAGAGATTCAGAGATTCCGAAATTCTGAAATTCTGAAATTCTAAAATTCTGTAATTCTAACATACTGAAACTCAAAAATTCAAAAATTCAAAAATTCGAAAACCTAAAAATTCTAAAATGCTAAAAAAAATCTTTGAAGGCTATTCTTGAAAACAGGGGCTTTCTGAATTTTAGGAATTTTGTGAAA</canonical>
            <polymorphic>TCGGAATATTTTCAAATTTTCTTCTAATTCCTAATCCACTGATCATTCTCCAAATTTTCAAAAAAGTACAGTAATCCAAAGAAAAACTGTGAAATCATTTGCAGACGGAAACTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTYTGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCCAGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATTTCAAAAAAATTTTTTTTAGTTTTTCATGGGAGTAGATTTTTTTAAAATAATCATTTTTATTTTTTTAAATAACTATTTAACTGGGATTCCCTCAATTATTTTTTTTTCAGAAATTCCAATTTCTTATTTAAAAATTGAAAAATCTGAATTCCTGAGATTCTGCGATTCAGAGATTCAGAGATTCCGAAATTCTGAAATTCTGAAATTCTAAAATTCTGTAATTCTAACATACTGAAACTCAAAAATTCAAAAATTCAAAAATTCGAAAACCTAAAAATTCTAAAATGCTAAAAAAAATCTTTGAAGGCTATTCTTGAAAACAGGGGCTTTCTGAATTTTAGGAATTTTGTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATATGCAAATTCTCGCTTATCT</pcr_primer_p1>
		<pcr_primer_p2>AAACACAAAAACAAACACAAACT</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>TATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCCAGTTTGTGTTTGTTTTTGTGTTT</canonical_amplicon>
		<polymorphic_amplicon>TATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTYTGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCCAGTTTGTGTTTGTTTTTGTGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36810</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>101560</contig_pos>
        <strand>+</strand>
        <context>ATTCTCTACC[C/T]AGTTTGTGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACC</left_flank>
        <right_flank>AGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATTTCAAAAAAATTTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCCAGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATTTCAAAAAAATTTTTTTTAGTTTTTCATGGGAGTAGATTTTTTTAAAATAATCATTTTTATTTTTTTAAATAACTATTTAACTGGGATTCCCTCAATTATTTTTTTTTCAGAAATTCCAATTTCTTATTTAAAAATTGAAAAATCTGAATTCCTGAGATTCTGCGATTCAGAGATTCAGAGATTCCGAAATTCTGAAATTCTGAAATTCTAAAATTCTGTAATTCTAACATACTGAAACTCAAAAATTCAAAAATTCAAAAATTCGAAAACCTAAAAATTCTAAAATGCTAAAAAAAATCTTTGAAGGCTATTCTTGAAAACAGGGGCTTTCTGAATTTTAGGAATTTTGTGAAAAGTGAATTTCCAGGTTTTTTCGAAAAACAAAAAAAATCGGAAATTTCTGAAAATTGAAAAAAATTTGGTTAAATTTGAAATTTTTCAAACTCGAACTTTAAAATAACATCT</canonical>
            <polymorphic>CTCTGGTCTATGCGCACTTCGTGCGCAAAGCCCCACACGACTTGACATCGTCGAGCGACGAGGACGACGGCGAGCGCTCCGACTAATTTCGGGCTGAAACGCTCAATGTTTGACTGAAAACGATTATATTTTCAGTTTCAAACCACATATTTAACCCCAAGACACATTTTGGGAATTTTCGAAAAAAATTTTTTTTCAATTTTTGCCCAAAATTCGAAATTTCCGTCAAGTTTTTTAAGCCAATTTCACTACTATACTACACATTTTAATATATATTTTTCCCTCTATTGTATATGCAAATTCTCGCTTATCTATTGTCCTCCATCTATTATTATTCTCTATTTCTCTCTTTTTCTTTTGTGTATGTCATTACACACTTTTTCAATTTTTGTTTTCATACGAAAACAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCYAGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATTTCAAAAAAATTTTTTTTAGTTTTTCATGGGAGTAGATTTTTTTAAAATAATCATTTTTATTTTTTTAAATAACTATTTAACTGGGATTCCCTCAATTATTTTTTTTTCAGAAATTCCAATTTCTTATTTAAAAATTGAAAAATCTGAATTCCTGAGATTCTGCGATTCAGAGATTCAGAGATTCCGAAATTCTGAAATTCTGAAATTCTAAAATTCTGTAATTCTAACATACTGAAACTCAAAAATTCAAAAATTCAAAAATTCGAAAACCTAAAAATTCTAAAATGCTAAAAAAAATCTTTGAAGGCTATTCTTGAAAACAGGGGCTTTCTGAATTTTAGGAATTTTGTGAAAAGTGAATTTCCAGGTTTTTTCGAAAAACAAAAAAAATCGGAAATTTCTGAAAATTGAAAAAAATTTGGTTAAATTTGAAATTTTTCAAACTCGAACTTTAAAATAACATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAAATTATTGATTTTCTCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTAGCATTTTAGAATTTTTAGG</pcr_primer_p2>
		<pcr_amplicon_size>424</pcr_amplicon_size>
		<canonical_amplicon>CAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCCAGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATTTCAAAAAAATTTTTTTTAGTTTTTCATGGGAGTAGATTTTTTTAAAATAATCATTTTTATTTTTTTAAATAACTATTTAACTGGGATTCCCTCAATTATTTTTTTTTCAGAAATTCCAATTTCTTATTTAAAAATTGAAAAATCTGAATTCCTGAGATTCTGCGATTCAGAGATTCAGAGATTCCGAAATTCTGAAATTCTGAAATTCTAAAATTCTGTAATTCTAACATACTGAAACTCAAAAATTCAAAAATTCAAAAATTCGAAAACCTAAAAATTCTAAAATGCTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CAGAAATTATTGATTTTCTCTTTTTTTTGTATTTTTTTGGGACGAATCTTGATGTCATGTTTTTCAAAGAAACAAGTTTCCAAGATTCTCTACCYAGTTTGTGTTTGTTTTTGTGTTTTGAAAAAAAATTTCAAAAAAATTTTTTTTAGTTTTTCATGGGAGTAGATTTTTTTAAAATAATCATTTTTATTTTTTTAAATAACTATTTAACTGGGATTCCCTCAATTATTTTTTTTTCAGAAATTCCAATTTCTTATTTAAAAATTGAAAAATCTGAATTCCTGAGATTCTGCGATTCAGAGATTCAGAGATTCCGAAATTCTGAAATTCTGAAATTCTAAAATTCTGTAATTCTAACATACTGAAACTCAAAAATTCAAAAATTCAAAAATTCGAAAACCTAAAAATTCTAAAATGCTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36811</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>141744</contig_pos>
        <strand>+</strand>
        <context>AAGCCCYAAA[C/T]CCCACCACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGAAAAAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCCCAAA</left_flank>
        <right_flank>CCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAAATTTTAGGCCTGTAAAATTTTAGGCTTATAAATTTTTTAGGCCTGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTTAGGCCTGTAAAATTTTAGGCTTATAAATTTTTTAGGCCTGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTCTAGGACTGTAAAATTTTTAGGTCTGTAAAACCTGTAAAAAATTAAGGCCTGCCAAATTTTTAGGCCTTAAAAAGGGCCTTTTTAAAAGGCCTGTTCTGGTCTTCAAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAAAAAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCCCAAAACCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGCGTAGAATGCGTTGAACGTCTTCTCCTTCATCATCATCGCTATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAAGGGACCTAAAGTGACTCACCAACACTACAAAAGATGTGACGTCGAATCTCAGAATTCATGCCGGCCTTCGTCGCCAGTGCGACGACTTCTGGTGGGAATGACGTCGTCTTCTTGGGATTGGCGCCTGCGGCTGACGCCAGAAGGCCGTAGCCGCCTTGTTCGGGCAATCGGAATGCCGATCCGATGATCCACCTGAAATAGGCCGATTTAAGCTATTGTAGGCTTT</canonical>
            <polymorphic>ACAAAATTTTAGGCCTGTAAAATTTTAGGCTTATAAATTTTTTAGGCCTGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTTAGGCCTGTAAAATTTTAGGCTTATAAATTTTTTAGGCCTGTAAAATTTTAGGCTTGTAAAATTTTTAGGCATGTAAAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTCTAGGACTGTAAAATTTTTAGGTCTGTAAAACCTGTAAAAAATTAAGGCCTGCCAAATTTTTAGGCCTTAAAAAGGGCCTTTTTAAAAGGCCTGTTCTGGTCTTCAAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAAAAAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCCCAAAYCCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGCGTAGAATGCGTTGAACGTCTTCTCCTTCATCATCATCGCTATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAAGGGACCTAAAGTGACTCACCAACACTACAAAAGATGTGACGTCGAATCTCAGAATTCATGCCGGCCTTCGTCGCCAGTGCGACGACTTCTGGTGGGAATGACGTCGTCTTCTTGGGATTGGCGCCTGCGGCTGACGCCAGAAGGCCGTAGCCGCCTTGTTCGGGCAATCGGAATGCCGATCCGATGATCCACCTGAAATAGGCCGATTTAAGCTATTGTAGGCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGTACCTATTTTGGCCTTA</pcr_primer_p1>
		<pcr_primer_p2>CTTCGAACGTCTTCTGAAACT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAAAAAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCCCAAAACCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGCGTAGAATGCGTTGAACGTCTTCTCCTTCATCATCATCGCTATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAG</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAAAAAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCCCAAAYCCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGCGTAGAATGCGTTGAACGTCTTCTCCTTCATCATCATCGCTATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36812</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>142010</contig_pos>
        <strand></strand>
        <context>gcctaaaatg[A/T]cctaaaaasg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATG</left_flank>
        <right_flank>CCTAAAAAGGGACCTAAAGTGACTCACCAACACTACAAAAGATGTGACGT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTCTAGGACTGTAAAATTTTTAGGTCTGTAAAACCTGTAAAAAATTAAGGCCTGCCAAATTTTTAGGCCTTAAAAAGGGCCTTTTTAAAAGGCCTGTTCTGGTCTTCAAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAAAAAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCCCAAAACCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGCGTAGAATGCGTTGAACGTCTTCTCCTTCATCATCATCGCTATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAAGGGACCTAAAGTGACTCACCAACACTACAAAAGATGTGACGTCGAATCTCAGAATTCATGCCGGCCTTCGTCGCCAGTGCGACGACTTCTGGTGGGAATGACGTCGTCTTCTTGGGATTGGCGCCTGCGGCTGACGCCAGAAGGCCGTAGCCGCCTTGTTCGGGCAATCGGAATGCCGATCCGATGATCCACCTGAAATAGGCCGATTTAAGCTATTGTAGGCTTTTTTGAGGCTGATTTAGGCTATTCAAAGGCAGTATTAGGCCTTAAAAAAAGGCCCTTTTCAAATGATTTTTAAGTTAAAATATATTTCCCTAGACAATTTCAGGCCTTTTTAGGCTTTTCAGGCCAATTTAGACTTGTTAGGCTGGTTTAGGTTTTTAGGCCTATTTTAAGGCTTTTCAGGCTAGCTTAGGCCTTTTTACAGGTCGATTAAGGAACATTTTAAGGCTCGTAGGCTGATTCAGGCTTTTTAGGCTGATTTCATAAAAT</canonical>
            <polymorphic>AAATTTTAGGCTTGTAAAATTTTTAGGCCAGTAAAATTTCTAGGACTGTAAAATTTTTAGGTCTGTAAAACCTGTAAAAAATTAAGGCCTGCCAAATTTTTAGGCCTTAAAAAGGGCCTTTTTAAAAGGCCTGTTCTGGTCTTCAAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAAAAAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCCCAAAACCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGCGTAGAATGCGTTGAACGTCTTCTCCTTCATCATCATCGCTATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGWCCTAAAAAGGGACCTAAAGTGACTCACCAACACTACAAAAGATGTGACGTCGAATCTCAGAATTCATGCCGGCCTTCGTCGCCAGTGCGACGACTTCTGGTGGGAATGACGTCGTCTTCTTGGGATTGGCGCCTGCGGCTGACGCCAGAAGGCCGTAGCCGCCTTGTTCGGGCAATCGGAATGCCGATCCGATGATCCACCTGAAATAGGCCGATTTAAGCTATTGTAGGCTTTTTTGAGGCTGATTTAGGCTATTCAAAGGCAGTATTAGGCCTTAAAAAAAGGCCCTTTTCAAATGATTTTTAAGTTAAAATATATTTCCCTAGACAATTTCAGGCCTTTTTAGGCTTTTCAGGCCAATTTAGACTTGTTAGGCTGGTTTAGGTTTTTAGGCCTATTTTAAGGCTTTTCAGGCTAGCTTAGGCCTTTTTACAGGTCGATTAAGGAACATTTTAAGGCTCGTAGGCTGATTCAGGCTTTTTAGGCTGATTTCATAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCAGGACATGGACCAGTT</pcr_primer_p1>
		<pcr_primer_p2>AGAGGCCTAATTTGTCTAGGA</pcr_primer_p2>
		<pcr_amplicon_size>768</pcr_amplicon_size>
		<canonical_amplicon>TATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAAGGGACCTAAAGT</canonical_amplicon>
		<polymorphic_amplicon>TATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGWCCTAAAAAGGGACCTAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36813</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>142019</contig_pos>
        <strand></strand>
        <context>gwcctaaaaa[G/C]ggwccwaaag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAA</left_flank>
        <right_flank>GGACCTAAAGTGACTCACCAACACTACAAAAGATGTGACGTCGAATCTCA</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTTGTAAAATTTTTAGGCCAGTAAAATTTCTAGGACTGTAAAATTTTTAGGTCTGTAAAACCTGTAAAAAATTAAGGCCTGCCAAATTTTTAGGCCTTAAAAAGGGCCTTTTTAAAAGGCCTGTTCTGGTCTTCAAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAAAAAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCCCAAAACCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGCGTAGAATGCGTTGAACGTCTTCTCCTTCATCATCATCGCTATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAAGGGACCTAAAGTGACTCACCAACACTACAAAAGATGTGACGTCGAATCTCAGAATTCATGCCGGCCTTCGTCGCCAGTGCGACGACTTCTGGTGGGAATGACGTCGTCTTCTTGGGATTGGCGCCTGCGGCTGACGCCAGAAGGCCGTAGCCGCCTTGTTCGGGCAATCGGAATGCCGATCCGATGATCCACCTGAAATAGGCCGATTTAAGCTATTGTAGGCTTTTTTGAGGCTGATTTAGGCTATTCAAAGGCAGTATTAGGCCTTAAAAAAAGGCCCTTTTCAAATGATTTTTAAGTTAAAATATATTTCCCTAGACAATTTCAGGCCTTTTTAGGCTTTTCAGGCCAATTTAGACTTGTTAGGCTGGTTTAGGTTTTTAGGCCTATTTTAAGGCTTTTCAGGCTAGCTTAGGCCTTTTTACAGGTCGATTAAGGAACATTTTAAGGCTCGTAGGCTGATTCAGGCTTTTTAGGCTGATTTCATAAAATGTTACAGGT</canonical>
            <polymorphic>GCTTGTAAAATTTTTAGGCCAGTAAAATTTCTAGGACTGTAAAATTTTTAGGTCTGTAAAACCTGTAAAAAATTAAGGCCTGCCAAATTTTTAGGCCTTAAAAAGGGCCTTTTTAAAAGGCCTGTTCTGGTCTTCAAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAAAAAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCCCAAAACCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGCGTAGAATGCGTTGAACGTCTTCTCCTTCATCATCATCGCTATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAASGGACCTAAAGTGACTCACCAACACTACAAAAGATGTGACGTCGAATCTCAGAATTCATGCCGGCCTTCGTCGCCAGTGCGACGACTTCTGGTGGGAATGACGTCGTCTTCTTGGGATTGGCGCCTGCGGCTGACGCCAGAAGGCCGTAGCCGCCTTGTTCGGGCAATCGGAATGCCGATCCGATGATCCACCTGAAATAGGCCGATTTAAGCTATTGTAGGCTTTTTTGAGGCTGATTTAGGCTATTCAAAGGCAGTATTAGGCCTTAAAAAAAGGCCCTTTTCAAATGATTTTTAAGTTAAAATATATTTCCCTAGACAATTTCAGGCCTTTTTAGGCTTTTCAGGCCAATTTAGACTTGTTAGGCTGGTTTAGGTTTTTAGGCCTATTTTAAGGCTTTTCAGGCTAGCTTAGGCCTTTTTACAGGTCGATTAAGGAACATTTTAAGGCTCGTAGGCTGATTCAGGCTTTTTAGGCTGATTTCATAAAATGTTACAGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>379 304 198 119</canonical_bands>
                <polymorphic_bands>423 379 198</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>274 272 225 105 91 33</canonical_bands>
                <polymorphic_bands>307 272 225 105 91</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCAGGACATGGACCAGTT</pcr_primer_p1>
		<pcr_primer_p2>AGAGGCCTAATTTGTCTAGGA</pcr_primer_p2>
		<pcr_amplicon_size>768</pcr_amplicon_size>
		<canonical_amplicon>TATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAAGGGACCTAAAGTGACTCACCA</canonical_amplicon>
		<polymorphic_amplicon>TATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAASGGACCTAAAGTGACTCACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36814</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>142022</contig_pos>
        <strand></strand>
        <context>ctaaaaasgg[A/T]ccwaaagtga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAAGGG</left_flank>
        <right_flank>CCTAAAGTGACTCACCAACACTACAAAAGATGTGACGTCGAATCTCAGAA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTAAAATTTTTAGGCCAGTAAAATTTCTAGGACTGTAAAATTTTTAGGTCTGTAAAACCTGTAAAAAATTAAGGCCTGCCAAATTTTTAGGCCTTAAAAAGGGCCTTTTTAAAAGGCCTGTTCTGGTCTTCAAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAAAAAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCCCAAAACCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGCGTAGAATGCGTTGAACGTCTTCTCCTTCATCATCATCGCTATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAAGGGACCTAAAGTGACTCACCAACACTACAAAAGATGTGACGTCGAATCTCAGAATTCATGCCGGCCTTCGTCGCCAGTGCGACGACTTCTGGTGGGAATGACGTCGTCTTCTTGGGATTGGCGCCTGCGGCTGACGCCAGAAGGCCGTAGCCGCCTTGTTCGGGCAATCGGAATGCCGATCCGATGATCCACCTGAAATAGGCCGATTTAAGCTATTGTAGGCTTTTTTGAGGCTGATTTAGGCTATTCAAAGGCAGTATTAGGCCTTAAAAAAAGGCCCTTTTCAAATGATTTTTAAGTTAAAATATATTTCCCTAGACAATTTCAGGCCTTTTTAGGCTTTTCAGGCCAATTTAGACTTGTTAGGCTGGTTTAGGTTTTTAGGCCTATTTTAAGGCTTTTCAGGCTAGCTTAGGCCTTTTTACAGGTCGATTAAGGAACATTTTAAGGCTCGTAGGCTGATTCAGGCTTTTTAGGCTGATTTCATAAAATGTTACAGGTCTA</canonical>
            <polymorphic>TGTAAAATTTTTAGGCCAGTAAAATTTCTAGGACTGTAAAATTTTTAGGTCTGTAAAACCTGTAAAAAATTAAGGCCTGCCAAATTTTTAGGCCTTAAAAAGGGCCTTTTTAAAAGGCCTGTTCTGGTCTTCAAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAAAAAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCCCAAAACCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGCGTAGAATGCGTTGAACGTCTTCTCCTTCATCATCATCGCTATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAAGGGWCCTAAAGTGACTCACCAACACTACAAAAGATGTGACGTCGAATCTCAGAATTCATGCCGGCCTTCGTCGCCAGTGCGACGACTTCTGGTGGGAATGACGTCGTCTTCTTGGGATTGGCGCCTGCGGCTGACGCCAGAAGGCCGTAGCCGCCTTGTTCGGGCAATCGGAATGCCGATCCGATGATCCACCTGAAATAGGCCGATTTAAGCTATTGTAGGCTTTTTTGAGGCTGATTTAGGCTATTCAAAGGCAGTATTAGGCCTTAAAAAAAGGCCCTTTTCAAATGATTTTTAAGTTAAAATATATTTCCCTAGACAATTTCAGGCCTTTTTAGGCTTTTCAGGCCAATTTAGACTTGTTAGGCTGGTTTAGGTTTTTAGGCCTATTTTAAGGCTTTTCAGGCTAGCTTAGGCCTTTTTACAGGTCGATTAAGGAACATTTTAAGGCTCGTAGGCTGATTCAGGCTTTTTAGGCTGATTTCATAAAATGTTACAGGTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>502 323 175</canonical_bands>
                <polymorphic_bands>677 323</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCAGGACATGGACCAGTT</pcr_primer_p1>
		<pcr_primer_p2>AGAGGCCTAATTTGTCTAGGA</pcr_primer_p2>
		<pcr_amplicon_size>768</pcr_amplicon_size>
		<canonical_amplicon>TATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAAGGGACCTAAAGTGACTCACCAACA</canonical_amplicon>
		<polymorphic_amplicon>TATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAAGGGWCCTAAAGTGACTCACCAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36815</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>142025</contig_pos>
        <strand></strand>
        <context>aaaasggwcc[T/A]aaagtgactc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAAGGGACC</left_flank>
        <right_flank>AAAGTGACTCACCAACACTACAAAAGATGTGACGTCGAATCTCAGAATTC</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATTTTTAGGCCAGTAAAATTTCTAGGACTGTAAAATTTTTAGGTCTGTAAAACCTGTAAAAAATTAAGGCCTGCCAAATTTTTAGGCCTTAAAAAGGGCCTTTTTAAAAGGCCTGTTCTGGTCTTCAAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAAAAAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCCCAAAACCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGCGTAGAATGCGTTGAACGTCTTCTCCTTCATCATCATCGCTATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAAGGGACCTAAAGTGACTCACCAACACTACAAAAGATGTGACGTCGAATCTCAGAATTCATGCCGGCCTTCGTCGCCAGTGCGACGACTTCTGGTGGGAATGACGTCGTCTTCTTGGGATTGGCGCCTGCGGCTGACGCCAGAAGGCCGTAGCCGCCTTGTTCGGGCAATCGGAATGCCGATCCGATGATCCACCTGAAATAGGCCGATTTAAGCTATTGTAGGCTTTTTTGAGGCTGATTTAGGCTATTCAAAGGCAGTATTAGGCCTTAAAAAAAGGCCCTTTTCAAATGATTTTTAAGTTAAAATATATTTCCCTAGACAATTTCAGGCCTTTTTAGGCTTTTCAGGCCAATTTAGACTTGTTAGGCTGGTTTAGGTTTTTAGGCCTATTTTAAGGCTTTTCAGGCTAGCTTAGGCCTTTTTACAGGTCGATTAAGGAACATTTTAAGGCTCGTAGGCTGATTCAGGCTTTTTAGGCTGATTTCATAAAATGTTACAGGTCTAAAA</canonical>
            <polymorphic>AAAATTTTTAGGCCAGTAAAATTTCTAGGACTGTAAAATTTTTAGGTCTGTAAAACCTGTAAAAAATTAAGGCCTGCCAAATTTTTAGGCCTTAAAAAGGGCCTTTTTAAAAGGCCTGTTCTGGTCTTCAAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAAAAAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCCCAAAACCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGCGTAGAATGCGTTGAACGTCTTCTCCTTCATCATCATCGCTATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAAGGGACCWAAAGTGACTCACCAACACTACAAAAGATGTGACGTCGAATCTCAGAATTCATGCCGGCCTTCGTCGCCAGTGCGACGACTTCTGGTGGGAATGACGTCGTCTTCTTGGGATTGGCGCCTGCGGCTGACGCCAGAAGGCCGTAGCCGCCTTGTTCGGGCAATCGGAATGCCGATCCGATGATCCACCTGAAATAGGCCGATTTAAGCTATTGTAGGCTTTTTTGAGGCTGATTTAGGCTATTCAAAGGCAGTATTAGGCCTTAAAAAAAGGCCCTTTTCAAATGATTTTTAAGTTAAAATATATTTCCCTAGACAATTTCAGGCCTTTTTAGGCTTTTCAGGCCAATTTAGACTTGTTAGGCTGGTTTAGGTTTTTAGGCCTATTTTAAGGCTTTTCAGGCTAGCTTAGGCCTTTTTACAGGTCGATTAAGGAACATTTTAAGGCTCGTAGGCTGATTCAGGCTTTTTAGGCTGATTTCATAAAATGTTACAGGTCTAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>274 272 231 99 91 33</canonical_bands>
                <polymorphic_bands>307 272 231 99 91</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCAGGACATGGACCAGTT</pcr_primer_p1>
		<pcr_primer_p2>AGAGGCCTAATTTGTCTAGGA</pcr_primer_p2>
		<pcr_amplicon_size>768</pcr_amplicon_size>
		<canonical_amplicon>TATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAAGGGACCTAAAGTGACTCACCAACACTA</canonical_amplicon>
		<polymorphic_amplicon>TATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAAGGGACCWAAAGTGACTCACCAACACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36816</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>142060</contig_pos>
        <strand>+</strand>
        <context>AGATGTGACG[C/T]CGAATCTCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCTAAAAAGGGACCTAAAGTGACTCACCAACACTACAAAAGATGTGACG</left_flank>
        <right_flank>CGAATCTCAGAATTCATGCCGGCCTTCGTCGCCAGTGCGACGACTTCTGG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTTTAGGTCTGTAAAACCTGTAAAAAATTAAGGCCTGCCAAATTTTTAGGCCTTAAAAAGGGCCTTTTTAAAAGGCCTGTTCTGGTCTTCAAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAAAAAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCCCAAAACCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGCGTAGAATGCGTTGAACGTCTTCTCCTTCATCATCATCGCTATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAAGGGACCTAAAGTGACTCACCAACACTACAAAAGATGTGACGTCGAATCTCAGAATTCATGCCGGCCTTCGTCGCCAGTGCGACGACTTCTGGTGGGAATGACGTCGTCTTCTTGGGATTGGCGCCTGCGGCTGACGCCAGAAGGCCGTAGCCGCCTTGTTCGGGCAATCGGAATGCCGATCCGATGATCCACCTGAAATAGGCCGATTTAAGCTATTGTAGGCTTTTTTGAGGCTGATTTAGGCTATTCAAAGGCAGTATTAGGCCTTAAAAAAAGGCCCTTTTCAAATGATTTTTAAGTTAAAATATATTTCCCTAGACAATTTCAGGCCTTTTTAGGCTTTTCAGGCCAATTTAGACTTGTTAGGCTGGTTTAGGTTTTTAGGCCTATTTTAAGGCTTTTCAGGCTAGCTTAGGCCTTTTTACAGGTCGATTAAGGAACATTTTAAGGCTCGTAGGCTGATTCAGGCTTTTTAGGCTGATTTCATAAAATGTTACAGGTCTAAAAATTACAAGCCTAAAATCTTTACATACCTATATATT</canonical>
            <polymorphic>AAATTTTTAGGTCTGTAAAACCTGTAAAAAATTAAGGCCTGCCAAATTTTTAGGCCTTAAAAAGGGCCTTTTTAAAAGGCCTGTTCTGGTCTTCAAAAAGTACCTATTTTGGCCTTAAAATGACCAATTCTGGCTGAAAAAAAGGCCTAAAATAGGGCCCAAAAACAGCCTAAAAGCCCCAAAACCCACCACAAATCTCCTATTAAATTCACAGAATCGCTGAAGAAGTGTCGCGTAGAATGCGTTGAACGTCTTCTCCTTCATCATCATCGCTATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAAGGGACCTAAAGTGACTCACCAACACTACAAAAGATGTGACGYCGAATCTCAGAATTCATGCCGGCCTTCGTCGCCAGTGCGACGACTTCTGGTGGGAATGACGTCGTCTTCTTGGGATTGGCGCCTGCGGCTGACGCCAGAAGGCCGTAGCCGCCTTGTTCGGGCAATCGGAATGCCGATCCGATGATCCACCTGAAATAGGCCGATTTAAGCTATTGTAGGCTTTTTTGAGGCTGATTTAGGCTATTCAAAGGCAGTATTAGGCCTTAAAAAAAGGCCCTTTTCAAATGATTTTTAAGTTAAAATATATTTCCCTAGACAATTTCAGGCCTTTTTAGGCTTTTCAGGCCAATTTAGACTTGTTAGGCTGGTTTAGGTTTTTAGGCCTATTTTAAGGCTTTTCAGGCTAGCTTAGGCCTTTTTACAGGTCGATTAAGGAACATTTTAAGGCTCGTAGGCTGATTCAGGCTTTTTAGGCTGATTTCATAAAATGTTACAGGTCTAAAAATTACAAGCCTAAAATCTTTACATACCTATATATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACGTC</site>
                <isoschizomers>
                    <enzyme>AatII</enzyme>
                    <enzyme>ZraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 438 62</canonical_bands>
                <polymorphic_bands>562 438</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>408 341 156 62 20 13</canonical_bands>
                <polymorphic_bands>408 341 218 20 13</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>387 336 112 90 75</canonical_bands>
                <polymorphic_bands>477 336 112 75</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>436 346 156 29 22 11</canonical_bands>
                <polymorphic_bands>436 346 185 22 11</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>441 249 166 82 62</canonical_bands>
                <polymorphic_bands>441 249 228 82</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCAGGACATGGACCAGTT</pcr_primer_p1>
		<pcr_primer_p2>AGAGGCCTAATTTGTCTAGGA</pcr_primer_p2>
		<pcr_amplicon_size>768</pcr_amplicon_size>
		<canonical_amplicon>TATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAAGGGACCTAAAGTGACTCACCAACACTACAAAAGATGTGACGTCGAATCTCAGAATTCATGCC</canonical_amplicon>
		<polymorphic_amplicon>TATCAGGACATGGACCAGTTCTCGCTCCTTTTCCCCCTTCAACTGAAGTTTCAGAAGACGTTCGAAGGCGTCGTCCTCGTCATCGGCGGTGGCTGAAAATTTGATTTAAAATGAGCCAAAATAGGCCTAAAACAGCTCGAATTAGACCTTGGAGGGCCTTAAATGGGCCTAAAATGACCTAAAAAGGGACCTAAAGTGACTCACCAACACTACAAAAGATGTGACGYCGAATCTCAGAATTCATGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36817</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>149884</contig_pos>
        <strand>+</strand>
        <context>GGCTGCTTTT[C/T]AAGATTTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTTGGAGCTATAGGGCTAACTTCAAACGGTCATAACTCGGCTGCTTTT</left_flank>
        <right_flank>AAGATTTTCTAGGCGTGTTTTGTATTAAAAAAATCCTCAAACCCTTACCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAATATTATTTGAAAGCCCGTAAAATGACACACAATTTGATATAATATTCAGTTTTCTAGCTCAAAAACTAGCTGAGTTACGGTAACTTGAAGTTTCGGAATTCAACTTTTTCAAAAGCCAAAAATTCAAATTACCGTAACTTTTTTAGTTTTGTAGCTAGAACAATGAAAGAAAGCTTAGAATGTGGGAAATCTTTTTGGCTTCATTTTAATAGTGCATGCAAAACAAGAAAATGGATGTGCGCTCTATTACAAGCTGGTTTCTAATAGCTACCCGATGTTAACGCATTCACTAACTTTAAGGGTTCATATCTCAGCTAGTTTAAATTCTGGAGTAACGGTTTTTATATCAAAATGTGTGAAATAAACTTGGCTTTCGAATGATTGCACATTCAAAAAAAGTTGAATGCAACTGCGCTCCACTGCACTCCAAACACCCCAGCTGTCTCTTTGGAGCTATAGGGCTAACTTCAAACGGTCATAACTCGGCTGCTTTTTAAGATTTTCTAGGCGTGTTTTGTATTAAAAAAATCCTCAAACCCTTACCTTCAAGGCTCCACAAAGCTCCACGGCCTCATAATCCGTTGTGACACGAATTCTGAAGTTTGGCGTATTAAACAACATCTTCAGCTCCTCTCCGTTCTCCAAACTCTTACATCCAATCGTTGCTTCACAAAATTTGCCATCCGCGACCTCTCCAGCCAAATTGGCACCCATCAAAACACTACACTCGACTCCCAGCGCCTTCTCAATGTCTTCAGAAATCAATTGCATTCTGATGACGTCATTTTCAGATGTCGATGAGATTCCTTTGGTTAAAGAGACCGCGTGAGCACCGTCTCGAAGATTTCCGCGGAGTTCTGAGCAAATTTGAGGGATTCCTTGATGGGGGACCACCAGGATTAGAATATGAGCGGATTCACAAGCATCTAAAAGTGAAGACGTGGCGATGACGTTGGATGGGATTCGGCGTCCCGGGAGGTATTTCGGGTTCTCAT</canonical>
            <polymorphic>TTTAATATTATTTGAAAGCCCGTAAAATGACACACAATTTGATATAATATTCAGTTTTCTAGCTCAAAAACTAGCTGAGTTACGGTAACTTGAAGTTTCGGAATTCAACTTTTTCAAAAGCCAAAAATTCAAATTACCGTAACTTTTTTAGTTTTGTAGCTAGAACAATGAAAGAAAGCTTAGAATGTGGGAAATCTTTTTGGCTTCATTTTAATAGTGCATGCAAAACAAGAAAATGGATGTGCGCTCTATTACAAGCTGGTTTCTAATAGCTACCCGATGTTAACGCATTCACTAACTTTAAGGGTTCATATCTCAGCTAGTTTAAATTCTGGAGTAACGGTTTTTATATCAAAATGTGTGAAATAAACTTGGCTTTCGAATGATTGCACATTCAAAAAAAGTTGAATGCAACTGCGCTCCACTGCACTCCAAACACCCCAGCTGTCTCTTTGGAGCTATAGGGCTAACTTCAAACGGTCATAACTCGGCTGCTTTTYAAGATTTTCTAGGCGTGTTTTGTATTAAAAAAATCCTCAAACCCTTACCTTCAAGGCTCCACAAAGCTCCACGGCCTCATAATCCGTTGTGACACGAATTCTGAAGTTTGGCGTATTAAACAACATCTTCAGCTCCTCTCCGTTCTCCAAACTCTTACATCCAATCGTTGCTTCACAAAATTTGCCATCCGCGACCTCTCCAGCCAAATTGGCACCCATCAAAACACTACACTCGACTCCCAGCGCCTTCTCAATGTCTTCAGAAATCAATTGCATTCTGATGACGTCATTTTCAGATGTCGATGAGATTCCTTTGGTTAAAGAGACCGCGTGAGCACCGTCTCGAAGATTTCCGCGGAGTTCTGAGCAAATTTGAGGGATTCCTTGATGGGGGACCACCAGGATTAGAATATGAGCGGATTCACAAGCATCTAAAAGTGAAGACGTGGCGATGACGTTGGATGGGATTCGGCGTCCCGGGAGGTATTTCGGGTTCTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>209 202 182 174 91 72 26 24 18 2</canonical_bands>
                <polymorphic_bands>209 202 200 182 91 72 24 18 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGGTTCATATCTCAGCTAGTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAGGTAAGGGTTTGAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGGGTTCATATCTCAGCTAGTTTAAATTCTGGAGTAACGGTTTTTATATCAAAATGTGTGAAATAAACTTGGCTTTCGAATGATTGCACATTCAAAAAAAGTTGAATGCAACTGCGCTCCACTGCACTCCAAACACCCCAGCTGTCTCTTTGGAGCTATAGGGCTAACTTCAAACGGTCATAACTCGGCTGCTTTTTAAGATTTTCTAGGCGTGTTTTGTATTAAAAAAATCCTCAAACCCTTACCTTC</canonical_amplicon>
		<polymorphic_amplicon>AGGGTTCATATCTCAGCTAGTTTAAATTCTGGAGTAACGGTTTTTATATCAAAATGTGTGAAATAAACTTGGCTTTCGAATGATTGCACATTCAAAAAAAGTTGAATGCAACTGCGCTCCACTGCACTCCAAACACCCCAGCTGTCTCTTTGGAGCTATAGGGCTAACTTCAAACGGTCATAACTCGGCTGCTTTTYAAGATTTTCTAGGCGTGTTTTGTATTAAAAAAATCCTCAAACCCTTACCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36818</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>149915</contig_pos>
        <strand>+</strand>
        <context>TGTATTAAAA[A/T]RATCCTCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCATAACTCGGCTGCTTTTTAAGATTTTCTAGGCGTGTTTTGTATTAAAA</left_flank>
        <right_flank>AATCCTCAAACCCTTACCTTCAAGGCTCCACAAAGCTCCACGGCCTCATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACAATTTGATATAATATTCAGTTTTCTAGCTCAAAAACTAGCTGAGTTACGGTAACTTGAAGTTTCGGAATTCAACTTTTTCAAAAGCCAAAAATTCAAATTACCGTAACTTTTTTAGTTTTGTAGCTAGAACAATGAAAGAAAGCTTAGAATGTGGGAAATCTTTTTGGCTTCATTTTAATAGTGCATGCAAAACAAGAAAATGGATGTGCGCTCTATTACAAGCTGGTTTCTAATAGCTACCCGATGTTAACGCATTCACTAACTTTAAGGGTTCATATCTCAGCTAGTTTAAATTCTGGAGTAACGGTTTTTATATCAAAATGTGTGAAATAAACTTGGCTTTCGAATGATTGCACATTCAAAAAAAGTTGAATGCAACTGCGCTCCACTGCACTCCAAACACCCCAGCTGTCTCTTTGGAGCTATAGGGCTAACTTCAAACGGTCATAACTCGGCTGCTTTTTAAGATTTTCTAGGCGTGTTTTGTATTAAAAAAATCCTCAAACCCTTACCTTCAAGGCTCCACAAAGCTCCACGGCCTCATAATCCGTTGTGACACGAATTCTGAAGTTTGGCGTATTAAACAACATCTTCAGCTCCTCTCCGTTCTCCAAACTCTTACATCCAATCGTTGCTTCACAAAATTTGCCATCCGCGACCTCTCCAGCCAAATTGGCACCCATCAAAACACTACACTCGACTCCCAGCGCCTTCTCAATGTCTTCAGAAATCAATTGCATTCTGATGACGTCATTTTCAGATGTCGATGAGATTCCTTTGGTTAAAGAGACCGCGTGAGCACCGTCTCGAAGATTTCCGCGGAGTTCTGAGCAAATTTGAGGGATTCCTTGATGGGGGACCACCAGGATTAGAATATGAGCGGATTCACAAGCATCTAAAAGTGAAGACGTGGCGATGACGTTGGATGGGATTCGGCGTCCCGGGAGGTATTTCGGGTTCTCATGAGTTGCATTTATGGTCTCGGCAATTGATGG</canonical>
            <polymorphic>ACACAATTTGATATAATATTCAGTTTTCTAGCTCAAAAACTAGCTGAGTTACGGTAACTTGAAGTTTCGGAATTCAACTTTTTCAAAAGCCAAAAATTCAAATTACCGTAACTTTTTTAGTTTTGTAGCTAGAACAATGAAAGAAAGCTTAGAATGTGGGAAATCTTTTTGGCTTCATTTTAATAGTGCATGCAAAACAAGAAAATGGATGTGCGCTCTATTACAAGCTGGTTTCTAATAGCTACCCGATGTTAACGCATTCACTAACTTTAAGGGTTCATATCTCAGCTAGTTTAAATTCTGGAGTAACGGTTTTTATATCAAAATGTGTGAAATAAACTTGGCTTTCGAATGATTGCACATTCAAAAAAAGTTGAATGCAACTGCGCTCCACTGCACTCCAAACACCCCAGCTGTCTCTTTGGAGCTATAGGGCTAACTTCAAACGGTCATAACTCGGCTGCTTTTTAAGATTTTCTAGGCGTGTTTTGTATTAAAAWAATCCTCAAACCCTTACCTTCAAGGCTCCACAAAGCTCCACGGCCTCATAATCCGTTGTGACACGAATTCTGAAGTTTGGCGTATTAAACAACATCTTCAGCTCCTCTCCGTTCTCCAAACTCTTACATCCAATCGTTGCTTCACAAAATTTGCCATCCGCGACCTCTCCAGCCAAATTGGCACCCATCAAAACACTACACTCGACTCCCAGCGCCTTCTCAATGTCTTCAGAAATCAATTGCATTCTGATGACGTCATTTTCAGATGTCGATGAGATTCCTTTGGTTAAAGAGACCGCGTGAGCACCGTCTCGAAGATTTCCGCGGAGTTCTGAGCAAATTTGAGGGATTCCTTGATGGGGGACCACCAGGATTAGAATATGAGCGGATTCACAAGCATCTAAAAGTGAAGACGTGGCGATGACGTTGGATGGGATTCGGCGTCCCGGGAGGTATTTCGGGTTCTCATGAGTTGCATTTATGGTCTCGGCAATTGATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTGAAATAAACTTGGCTTTC</pcr_primer_p1>
		<pcr_primer_p2>CTTCAGAATTCGTGTCACAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTGTGAAATAAACTTGGCTTTCGAATGATTGCACATTCAAAAAAAGTTGAATGCAACTGCGCTCCACTGCACTCCAAACACCCCAGCTGTCTCTTTGGAGCTATAGGGCTAACTTCAAACGGTCATAACTCGGCTGCTTTTTAAGATTTTCTAGGCGTGTTTTGTATTAAAAAAATCCTCAAACCCTTACCTTCAAGGCTCCACAAAGCTCCACGGCCTCATAATCCGTTGTGACACGAATTCTGAAG</canonical_amplicon>
		<polymorphic_amplicon>GTGTGAAATAAACTTGGCTTTCGAATGATTGCACATTCAAAAAAAGTTGAATGCAACTGCGCTCCACTGCACTCCAAACACCCCAGCTGTCTCTTTGGAGCTATAGGGCTAACTTCAAACGGTCATAACTCGGCTGCTTTTTAAGATTTTCTAGGCGTGTTTTGTATTAAAAWAATCCTCAAACCCTTACCTTCAAGGCTCCACAAAGCTCCACGGCCTCATAATCCGTTGTGACACGAATTCTGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36819</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>149916</contig_pos>
        <strand>+</strand>
        <context>GTATTAAAAW[A/G]ATCCTCAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATAACTCGGCTGCTTTTTAAGATTTTCTAGGCGTGTTTTGTATTAAAAA</left_flank>
        <right_flank>ATCCTCAAACCCTTACCTTCAAGGCTCCACAAAGCTCCACGGCCTCATAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACAATTTGATATAATATTCAGTTTTCTAGCTCAAAAACTAGCTGAGTTACGGTAACTTGAAGTTTCGGAATTCAACTTTTTCAAAAGCCAAAAATTCAAATTACCGTAACTTTTTTAGTTTTGTAGCTAGAACAATGAAAGAAAGCTTAGAATGTGGGAAATCTTTTTGGCTTCATTTTAATAGTGCATGCAAAACAAGAAAATGGATGTGCGCTCTATTACAAGCTGGTTTCTAATAGCTACCCGATGTTAACGCATTCACTAACTTTAAGGGTTCATATCTCAGCTAGTTTAAATTCTGGAGTAACGGTTTTTATATCAAAATGTGTGAAATAAACTTGGCTTTCGAATGATTGCACATTCAAAAAAAGTTGAATGCAACTGCGCTCCACTGCACTCCAAACACCCCAGCTGTCTCTTTGGAGCTATAGGGCTAACTTCAAACGGTCATAACTCGGCTGCTTTTTAAGATTTTCTAGGCGTGTTTTGTATTAAAAAAATCCTCAAACCCTTACCTTCAAGGCTCCACAAAGCTCCACGGCCTCATAATCCGTTGTGACACGAATTCTGAAGTTTGGCGTATTAAACAACATCTTCAGCTCCTCTCCGTTCTCCAAACTCTTACATCCAATCGTTGCTTCACAAAATTTGCCATCCGCGACCTCTCCAGCCAAATTGGCACCCATCAAAACACTACACTCGACTCCCAGCGCCTTCTCAATGTCTTCAGAAATCAATTGCATTCTGATGACGTCATTTTCAGATGTCGATGAGATTCCTTTGGTTAAAGAGACCGCGTGAGCACCGTCTCGAAGATTTCCGCGGAGTTCTGAGCAAATTTGAGGGATTCCTTGATGGGGGACCACCAGGATTAGAATATGAGCGGATTCACAAGCATCTAAAAGTGAAGACGTGGCGATGACGTTGGATGGGATTCGGCGTCCCGGGAGGTATTTCGGGTTCTCATGAGTTGCATTTATGGTCTCGGCAATTGATGGG</canonical>
            <polymorphic>CACAATTTGATATAATATTCAGTTTTCTAGCTCAAAAACTAGCTGAGTTACGGTAACTTGAAGTTTCGGAATTCAACTTTTTCAAAAGCCAAAAATTCAAATTACCGTAACTTTTTTAGTTTTGTAGCTAGAACAATGAAAGAAAGCTTAGAATGTGGGAAATCTTTTTGGCTTCATTTTAATAGTGCATGCAAAACAAGAAAATGGATGTGCGCTCTATTACAAGCTGGTTTCTAATAGCTACCCGATGTTAACGCATTCACTAACTTTAAGGGTTCATATCTCAGCTAGTTTAAATTCTGGAGTAACGGTTTTTATATCAAAATGTGTGAAATAAACTTGGCTTTCGAATGATTGCACATTCAAAAAAAGTTGAATGCAACTGCGCTCCACTGCACTCCAAACACCCCAGCTGTCTCTTTGGAGCTATAGGGCTAACTTCAAACGGTCATAACTCGGCTGCTTTTTAAGATTTTCTAGGCGTGTTTTGTATTAAAAARATCCTCAAACCCTTACCTTCAAGGCTCCACAAAGCTCCACGGCCTCATAATCCGTTGTGACACGAATTCTGAAGTTTGGCGTATTAAACAACATCTTCAGCTCCTCTCCGTTCTCCAAACTCTTACATCCAATCGTTGCTTCACAAAATTTGCCATCCGCGACCTCTCCAGCCAAATTGGCACCCATCAAAACACTACACTCGACTCCCAGCGCCTTCTCAATGTCTTCAGAAATCAATTGCATTCTGATGACGTCATTTTCAGATGTCGATGAGATTCCTTTGGTTAAAGAGACCGCGTGAGCACCGTCTCGAAGATTTCCGCGGAGTTCTGAGCAAATTTGAGGGATTCCTTGATGGGGGACCACCAGGATTAGAATATGAGCGGATTCACAAGCATCTAAAAGTGAAGACGTGGCGATGACGTTGGATGGGATTCGGCGTCCCGGGAGGTATTTCGGGTTCTCATGAGTTGCATTTATGGTCTCGGCAATTGATGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTGAAATAAACTTGGCTTTC</pcr_primer_p1>
		<pcr_primer_p2>CTTCAGAATTCGTGTCACAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTGTGAAATAAACTTGGCTTTCGAATGATTGCACATTCAAAAAAAGTTGAATGCAACTGCGCTCCACTGCACTCCAAACACCCCAGCTGTCTCTTTGGAGCTATAGGGCTAACTTCAAACGGTCATAACTCGGCTGCTTTTTAAGATTTTCTAGGCGTGTTTTGTATTAAAAAAATCCTCAAACCCTTACCTTCAAGGCTCCACAAAGCTCCACGGCCTCATAATCCGTTGTGACACGAATTCTGAAG</canonical_amplicon>
		<polymorphic_amplicon>GTGTGAAATAAACTTGGCTTTCGAATGATTGCACATTCAAAAAAAGTTGAATGCAACTGCGCTCCACTGCACTCCAAACACCCCAGCTGTCTCTTTGGAGCTATAGGGCTAACTTCAAACGGTCATAACTCGGCTGCTTTTTAAGATTTTCTAGGCGTGTTTTGTATTAAAAARATCCTCAAACCCTTACCTTCAAGGCTCCACAAAGCTCCACGGCCTCATAATCCGTTGTGACACGAATTCTGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36820</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>151760</contig_pos>
        <strand>+</strand>
        <context>TTCAAGGTCA[C/T]CCCAAGTCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATCAAGTCTTAATCTTTATTGCTTTTTATGAGGACCATTTTCAAGGTCA</left_flank>
        <right_flank>CCCAAGTCCTAGAACCTTCTAGAAAGTATTTTTCCAGAGTTTTGGGTCCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGATGGGGAGATAGAGATAGGAGACGGAGAACAGTGATCTATAAGCGTCAGGGACCAAAGATCGGGGTGGTATGCAAATTACGGTTTGCAGAGATCCGTTAGACTTTGTCCTTGTTGATCTTTGGTCTTCTTTAGAGCTTTTTGGGTGGCTAACTCTGTCAAAAACTAGGAAAGAACTAGTAAGAATGACTCTAAACAACTTCAAATAGCTCCTCGAAAAAAGCAAAAAAGATTTGACCTCGGTAGGATTCGAACCCGCGACCTCTAGATCCAAAGTCTAGAGCGCTACCACTACACCAAGTGTGCAAATATTTTGGCGCCTTCTTAAGTCCATAGAAAAAGGGGTGGTCGTGGCGCCCGGTGGGTGGTGGCGCGGGAGCCTCCCCCACCATTGTGGTGTAGTGGTTGTGTGCTGGGATTCCATGCGAAGGGTTTCTGGTTCAATTCCCATCAAGTCTTAATCTTTATTGCTTTTTATGAGGACCATTTTCAAGGTCATCCCAAGTCCTAGAACCTTCTAGAAAGTATTTTTCCAGAGTTTTGGGTCCAAAAAAGTTAGTATTTTGACCTGAATATCAAATTTCACGTGAATGACATCACACTTTACTGTACTACGACTGTTTGACGCACTTTTCAGATAAAAATTGTACGAAAGGAGAAAGTATGGGAGATGGAGAGACCGTGAGGGGTGTCAATGAACAGAACGGCGTCAATGATCAGTTTCGGGGGCTATTTTTGGATTCTCTAGACCTACAAAACTTTGTACAACTTGAGAAAAAGTACAGTAACGTGAATTTGAAATGAATTTGAAGGAACATCTGGAGATCAGGACACACAGACAGACATTTCTTTTTAAAGCCGATTTTTGTCCATTTTAGCCCGTTTTTGACCCTCTAAAAATGACATATGGCCTTTTACAATGCTTTTTTTGTGTTTTTTCACACTAATTAGATTAATAGGCATGTTGAAAACCATAGAAAAACATACAAAAAAGGCGGC</canonical>
            <polymorphic>TAGATGGGGAGATAGAGATAGGAGACGGAGAACAGTGATCTATAAGCGTCAGGGACCAAAGATCGGGGTGGTATGCAAATTACGGTTTGCAGAGATCCGTTAGACTTTGTCCTTGTTGATCTTTGGTCTTCTTTAGAGCTTTTTGGGTGGCTAACTCTGTCAAAAACTAGGAAAGAACTAGTAAGAATGACTCTAAACAACTTCAAATAGCTCCTCGAAAAAAGCAAAAAAGATTTGACCTCGGTAGGATTCGAACCCGCGACCTCTAGATCCAAAGTCTAGAGCGCTACCACTACACCAAGTGTGCAAATATTTTGGCGCCTTCTTAAGTCCATAGAAAAAGGGGTGGTCGTGGCGCCCGGTGGGTGGTGGCGCGGGAGCCTCCCCCACCATTGTGGTGTAGTGGTTGTGTGCTGGGATTCCATGCGAAGGGTTTCTGGTTCAATTCCCATCAAGTCTTAATCTTTATTGCTTTTTATGAGGACCATTTTCAAGGTCAYCCCAAGTCCTAGAACCTTCTAGAAAGTATTTTTCCAGAGTTTTGGGTCCAAAAAAGTTAGTATTTTGACCTGAATATCAAATTTCACGTGAATGACATCACACTTTACTGTACTACGACTGTTTGACGCACTTTTCAGATAAAAATTGTACGAAAGGAGAAAGTATGGGAGATGGAGAGACCGTGAGGGGTGTCAATGAACAGAACGGCGTCAATGATCAGTTTCGGGGGCTATTTTTGGATTCTCTAGACCTACAAAACTTTGTACAACTTGAGAAAAAGTACAGTAACGTGAATTTGAAATGAATTTGAAGGAACATCTGGAGATCAGGACACACAGACAGACATTTCTTTTTAAAGCCGATTTTTGTCCATTTTAGCCCGTTTTTGACCCTCTAAAAATGACATATGGCCTTTTACAATGCTTTTTTTGTGTTTTTTCACACTAATTAGATTAATAGGCATGTTGAAAACCATAGAAAAACATACAAAAAAGGCGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCCATCAAGTCTTAATCTTT</pcr_primer_p1>
		<pcr_primer_p2>TCTCTCCATCTCCCATACTTT</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>ATTCCCATCAAGTCTTAATCTTTATTGCTTTTTATGAGGACCATTTTCAAGGTCATCCCAAGTCCTAGAACCTTCTAGAAAGTATTTTTCCAGAGTTTTGGGTCCAAAAAAGTTAGTATTTTGACCTGAATATCAAATTTCACGTGAATGACATCACACTTTACTGTACTACGACTGTTTGACGCACTTTTCAGATAAAAATTGTACGAAAGGAGAAAGTATGGGAGATGGAGAGA</canonical_amplicon>
		<polymorphic_amplicon>ATTCCCATCAAGTCTTAATCTTTATTGCTTTTTATGAGGACCATTTTCAAGGTCAYCCCAAGTCCTAGAACCTTCTAGAAAGTATTTTTCCAGAGTTTTGGGTCCAAAAAAGTTAGTATTTTGACCTGAATATCAAATTTCACGTGAATGACATCACACTTTACTGTACTACGACTGTTTGACGCACTTTTCAGATAAAAATTGTACGAAAGGAGAAAGTATGGGAGATGGAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36821</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>151788</contig_pos>
        <strand>+</strand>
        <context>TCTAGAAAGT[A/T]TTTTTCCAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGAGGACCATTTTCAAGGTCATCCCAAGTCCTAGAACCTTCTAGAAAGT</left_flank>
        <right_flank>TTTTTCCAGAGTTTTGGGTCCAAAAAAGTTAGTATTTTGACCTGAATATC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAACAGTGATCTATAAGCGTCAGGGACCAAAGATCGGGGTGGTATGCAAATTACGGTTTGCAGAGATCCGTTAGACTTTGTCCTTGTTGATCTTTGGTCTTCTTTAGAGCTTTTTGGGTGGCTAACTCTGTCAAAAACTAGGAAAGAACTAGTAAGAATGACTCTAAACAACTTCAAATAGCTCCTCGAAAAAAGCAAAAAAGATTTGACCTCGGTAGGATTCGAACCCGCGACCTCTAGATCCAAAGTCTAGAGCGCTACCACTACACCAAGTGTGCAAATATTTTGGCGCCTTCTTAAGTCCATAGAAAAAGGGGTGGTCGTGGCGCCCGGTGGGTGGTGGCGCGGGAGCCTCCCCCACCATTGTGGTGTAGTGGTTGTGTGCTGGGATTCCATGCGAAGGGTTTCTGGTTCAATTCCCATCAAGTCTTAATCTTTATTGCTTTTTATGAGGACCATTTTCAAGGTCATCCCAAGTCCTAGAACCTTCTAGAAAGTATTTTTCCAGAGTTTTGGGTCCAAAAAAGTTAGTATTTTGACCTGAATATCAAATTTCACGTGAATGACATCACACTTTACTGTACTACGACTGTTTGACGCACTTTTCAGATAAAAATTGTACGAAAGGAGAAAGTATGGGAGATGGAGAGACCGTGAGGGGTGTCAATGAACAGAACGGCGTCAATGATCAGTTTCGGGGGCTATTTTTGGATTCTCTAGACCTACAAAACTTTGTACAACTTGAGAAAAAGTACAGTAACGTGAATTTGAAATGAATTTGAAGGAACATCTGGAGATCAGGACACACAGACAGACATTTCTTTTTAAAGCCGATTTTTGTCCATTTTAGCCCGTTTTTGACCCTCTAAAAATGACATATGGCCTTTTACAATGCTTTTTTTGTGTTTTTTCACACTAATTAGATTAATAGGCATGTTGAAAACCATAGAAAAACATACAAAAAAGGCGGCTTATCCGATTGCGTCATATAATTACAAA</canonical>
            <polymorphic>AGAACAGTGATCTATAAGCGTCAGGGACCAAAGATCGGGGTGGTATGCAAATTACGGTTTGCAGAGATCCGTTAGACTTTGTCCTTGTTGATCTTTGGTCTTCTTTAGAGCTTTTTGGGTGGCTAACTCTGTCAAAAACTAGGAAAGAACTAGTAAGAATGACTCTAAACAACTTCAAATAGCTCCTCGAAAAAAGCAAAAAAGATTTGACCTCGGTAGGATTCGAACCCGCGACCTCTAGATCCAAAGTCTAGAGCGCTACCACTACACCAAGTGTGCAAATATTTTGGCGCCTTCTTAAGTCCATAGAAAAAGGGGTGGTCGTGGCGCCCGGTGGGTGGTGGCGCGGGAGCCTCCCCCACCATTGTGGTGTAGTGGTTGTGTGCTGGGATTCCATGCGAAGGGTTTCTGGTTCAATTCCCATCAAGTCTTAATCTTTATTGCTTTTTATGAGGACCATTTTCAAGGTCATCCCAAGTCCTAGAACCTTCTAGAAAGTWTTTTTCCAGAGTTTTGGGTCCAAAAAAGTTAGTATTTTGACCTGAATATCAAATTTCACGTGAATGACATCACACTTTACTGTACTACGACTGTTTGACGCACTTTTCAGATAAAAATTGTACGAAAGGAGAAAGTATGGGAGATGGAGAGACCGTGAGGGGTGTCAATGAACAGAACGGCGTCAATGATCAGTTTCGGGGGCTATTTTTGGATTCTCTAGACCTACAAAACTTTGTACAACTTGAGAAAAAGTACAGTAACGTGAATTTGAAATGAATTTGAAGGAACATCTGGAGATCAGGACACACAGACAGACATTTCTTTTTAAAGCCGATTTTTGTCCATTTTAGCCCGTTTTTGACCCTCTAAAAATGACATATGGCCTTTTACAATGCTTTTTTTGTGTTTTTTCACACTAATTAGATTAATAGGCATGTTGAAAACCATAGAAAAACATACAAAAAAGGCGGCTTATCCGATTGCGTCATATAATTACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCCATCAAGTCTTAATCTTT</pcr_primer_p1>
		<pcr_primer_p2>TCTCTCCATCTCCCATACTTT</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>ATTCCCATCAAGTCTTAATCTTTATTGCTTTTTATGAGGACCATTTTCAAGGTCATCCCAAGTCCTAGAACCTTCTAGAAAGTATTTTTCCAGAGTTTTGGGTCCAAAAAAGTTAGTATTTTGACCTGAATATCAAATTTCACGTGAATGACATCACACTTTACTGTACTACGACTGTTTGACGCACTTTTCAGATAAAAATTGTACGAAAGGAGAAAGTATGGGAGATGGAGAGA</canonical_amplicon>
		<polymorphic_amplicon>ATTCCCATCAAGTCTTAATCTTTATTGCTTTTTATGAGGACCATTTTCAAGGTCATCCCAAGTCCTAGAACCTTCTAGAAAGTWTTTTTCCAGAGTTTTGGGTCCAAAAAAGTTAGTATTTTGACCTGAATATCAAATTTCACGTGAATGACATCACACTTTACTGTACTACGACTGTTTGACGCACTTTTCAGATAAAAATTGTACGAAAGGAGAAAGTATGGGAGATGGAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36822</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>151885</contig_pos>
        <strand>+</strand>
        <context>ACGACTGTTT[G/T]ACGCACTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATCAAATTTCACGTGAATGACATCACACTTTACTGTACTACGACTGTTT</left_flank>
        <right_flank>ACGCACTTTTCAGATAAAAATTGTACGAAAGGAGAAAGTATGGGAGATGG</right_flank>
        <qual_score>145</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTTCTTTAGAGCTTTTTGGGTGGCTAACTCTGTCAAAAACTAGGAAAGAACTAGTAAGAATGACTCTAAACAACTTCAAATAGCTCCTCGAAAAAAGCAAAAAAGATTTGACCTCGGTAGGATTCGAACCCGCGACCTCTAGATCCAAAGTCTAGAGCGCTACCACTACACCAAGTGTGCAAATATTTTGGCGCCTTCTTAAGTCCATAGAAAAAGGGGTGGTCGTGGCGCCCGGTGGGTGGTGGCGCGGGAGCCTCCCCCACCATTGTGGTGTAGTGGTTGTGTGCTGGGATTCCATGCGAAGGGTTTCTGGTTCAATTCCCATCAAGTCTTAATCTTTATTGCTTTTTATGAGGACCATTTTCAAGGTCATCCCAAGTCCTAGAACCTTCTAGAAAGTATTTTTCCAGAGTTTTGGGTCCAAAAAAGTTAGTATTTTGACCTGAATATCAAATTTCACGTGAATGACATCACACTTTACTGTACTACGACTGTTTGACGCACTTTTCAGATAAAAATTGTACGAAAGGAGAAAGTATGGGAGATGGAGAGACCGTGAGGGGTGTCAATGAACAGAACGGCGTCAATGATCAGTTTCGGGGGCTATTTTTGGATTCTCTAGACCTACAAAACTTTGTACAACTTGAGAAAAAGTACAGTAACGTGAATTTGAAATGAATTTGAAGGAACATCTGGAGATCAGGACACACAGACAGACATTTCTTTTTAAAGCCGATTTTTGTCCATTTTAGCCCGTTTTTGACCCTCTAAAAATGACATATGGCCTTTTACAATGCTTTTTTTGTGTTTTTTCACACTAATTAGATTAATAGGCATGTTGAAAACCATAGAAAAACATACAAAAAAGGCGGCTTATCCGATTGCGTCATATAATTACAAAGGGAGGCGTATTAGAGTAATTAGGTCAACTGGGGAAAGGTCAAAAATGAAAATAATTGTTCATTCTCGACTCATTTGTGCATTTGCGACAAGAAAAT</canonical>
            <polymorphic>GTCTTCTTTAGAGCTTTTTGGGTGGCTAACTCTGTCAAAAACTAGGAAAGAACTAGTAAGAATGACTCTAAACAACTTCAAATAGCTCCTCGAAAAAAGCAAAAAAGATTTGACCTCGGTAGGATTCGAACCCGCGACCTCTAGATCCAAAGTCTAGAGCGCTACCACTACACCAAGTGTGCAAATATTTTGGCGCCTTCTTAAGTCCATAGAAAAAGGGGTGGTCGTGGCGCCCGGTGGGTGGTGGCGCGGGAGCCTCCCCCACCATTGTGGTGTAGTGGTTGTGTGCTGGGATTCCATGCGAAGGGTTTCTGGTTCAATTCCCATCAAGTCTTAATCTTTATTGCTTTTTATGAGGACCATTTTCAAGGTCATCCCAAGTCCTAGAACCTTCTAGAAAGTATTTTTCCAGAGTTTTGGGTCCAAAAAAGTTAGTATTTTGACCTGAATATCAAATTTCACGTGAATGACATCACACTTTACTGTACTACGACTGTTTKACGCACTTTTCAGATAAAAATTGTACGAAAGGAGAAAGTATGGGAGATGGAGAGACCGTGAGGGGTGTCAATGAACAGAACGGCGTCAATGATCAGTTTCGGGGGCTATTTTTGGATTCTCTAGACCTACAAAACTTTGTACAACTTGAGAAAAAGTACAGTAACGTGAATTTGAAATGAATTTGAAGGAACATCTGGAGATCAGGACACACAGACAGACATTTCTTTTTAAAGCCGATTTTTGTCCATTTTAGCCCGTTTTTGACCCTCTAAAAATGACATATGGCCTTTTACAATGCTTTTTTTGTGTTTTTTCACACTAATTAGATTAATAGGCATGTTGAAAACCATAGAAAAACATACAAAAAAGGCGGCTTATCCGATTGCGTCATATAATTACAAAGGGAGGCGTATTAGAGTAATTAGGTCAACTGGGGAAAGGTCAAAAATGAAAATAATTGTTCATTCTCGACTCATTTGTGCATTTGCGACAAGAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCCATCAAGTCTTAATCTTT</pcr_primer_p1>
		<pcr_primer_p2>TCTCTCCATCTCCCATACTTT</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>ATTCCCATCAAGTCTTAATCTTTATTGCTTTTTATGAGGACCATTTTCAAGGTCATCCCAAGTCCTAGAACCTTCTAGAAAGTATTTTTCCAGAGTTTTGGGTCCAAAAAAGTTAGTATTTTGACCTGAATATCAAATTTCACGTGAATGACATCACACTTTACTGTACTACGACTGTTTGACGCACTTTTCAGATAAAAATTGTACGAAAGGAGAAAGTATGGGAGATGGAGAGA</canonical_amplicon>
		<polymorphic_amplicon>ATTCCCATCAAGTCTTAATCTTTATTGCTTTTTATGAGGACCATTTTCAAGGTCATCCCAAGTCCTAGAACCTTCTAGAAAGTATTTTTCCAGAGTTTTGGGTCCAAAAAAGTTAGTATTTTGACCTGAATATCAAATTTCACGTGAATGACATCACACTTTACTGTACTACGACTGTTTKACGCACTTTTCAGATAAAAATTGTACGAAAGGAGAAAGTATGGGAGATGGAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36823</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>152015</contig_pos>
        <strand>+</strand>
        <context>TCTAGACCTA[A/C]AAAACTTTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACGGCGTCAATGATCAGTTTCGGGGGCTATTTTTGGATTCTCTAGACCTA</left_flank>
        <right_flank>AAAACTTTGTACAACTTGAGAAAAAGTACAGTAACGTGAATTTGAAATGA</right_flank>
        <qual_score>149</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCGCGACCTCTAGATCCAAAGTCTAGAGCGCTACCACTACACCAAGTGTGCAAATATTTTGGCGCCTTCTTAAGTCCATAGAAAAAGGGGTGGTCGTGGCGCCCGGTGGGTGGTGGCGCGGGAGCCTCCCCCACCATTGTGGTGTAGTGGTTGTGTGCTGGGATTCCATGCGAAGGGTTTCTGGTTCAATTCCCATCAAGTCTTAATCTTTATTGCTTTTTATGAGGACCATTTTCAAGGTCATCCCAAGTCCTAGAACCTTCTAGAAAGTATTTTTCCAGAGTTTTGGGTCCAAAAAAGTTAGTATTTTGACCTGAATATCAAATTTCACGTGAATGACATCACACTTTACTGTACTACGACTGTTTGACGCACTTTTCAGATAAAAATTGTACGAAAGGAGAAAGTATGGGAGATGGAGAGACCGTGAGGGGTGTCAATGAACAGAACGGCGTCAATGATCAGTTTCGGGGGCTATTTTTGGATTCTCTAGACCTACAAAACTTTGTACAACTTGAGAAAAAGTACAGTAACGTGAATTTGAAATGAATTTGAAGGAACATCTGGAGATCAGGACACACAGACAGACATTTCTTTTTAAAGCCGATTTTTGTCCATTTTAGCCCGTTTTTGACCCTCTAAAAATGACATATGGCCTTTTACAATGCTTTTTTTGTGTTTTTTCACACTAATTAGATTAATAGGCATGTTGAAAACCATAGAAAAACATACAAAAAAGGCGGCTTATCCGATTGCGTCATATAATTACAAAGGGAGGCGTATTAGAGTAATTAGGTCAACTGGGGAAAGGTCAAAAATGAAAATAATTGTTCATTCTCGACTCATTTGTGCATTTGCGACAAGAAAATTTCGGATTTTCAAAAAAAAAAAGATTTTTTTTGAAAATAATTTTTTTGAAAATTTTTTCTTTTGATCATAACGTTTTTCATTTTTGACCCATTCTCATGAAATGTATATTTTTGAAAACCTCAATGTTTC</canonical>
            <polymorphic>CCCGCGACCTCTAGATCCAAAGTCTAGAGCGCTACCACTACACCAAGTGTGCAAATATTTTGGCGCCTTCTTAAGTCCATAGAAAAAGGGGTGGTCGTGGCGCCCGGTGGGTGGTGGCGCGGGAGCCTCCCCCACCATTGTGGTGTAGTGGTTGTGTGCTGGGATTCCATGCGAAGGGTTTCTGGTTCAATTCCCATCAAGTCTTAATCTTTATTGCTTTTTATGAGGACCATTTTCAAGGTCATCCCAAGTCCTAGAACCTTCTAGAAAGTATTTTTCCAGAGTTTTGGGTCCAAAAAAGTTAGTATTTTGACCTGAATATCAAATTTCACGTGAATGACATCACACTTTACTGTACTACGACTGTTTGACGCACTTTTCAGATAAAAATTGTACGAAAGGAGAAAGTATGGGAGATGGAGAGACCGTGAGGGGTGTCAATGAACAGAACGGCGTCAATGATCAGTTTCGGGGGCTATTTTTGGATTCTCTAGACCTAMAAAACTTTGTACAACTTGAGAAAAAGTACAGTAACGTGAATTTGAAATGAATTTGAAGGAACATCTGGAGATCAGGACACACAGACAGACATTTCTTTTTAAAGCCGATTTTTGTCCATTTTAGCCCGTTTTTGACCCTCTAAAAATGACATATGGCCTTTTACAATGCTTTTTTTGTGTTTTTTCACACTAATTAGATTAATAGGCATGTTGAAAACCATAGAAAAACATACAAAAAAGGCGGCTTATCCGATTGCGTCATATAATTACAAAGGGAGGCGTATTAGAGTAATTAGGTCAACTGGGGAAAGGTCAAAAATGAAAATAATTGTTCATTCTCGACTCATTTGTGCATTTGCGACAAGAAAATTTCGGATTTTCAAAAAAAAAAAGATTTTTTTTGAAAATAATTTTTTTGAAAATTTTTTCTTTTGATCATAACGTTTTTCATTTTTGACCCATTCTCATGAAATGTATATTTTTGAAAACCTCAATGTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGTATGGGAGATGGAGAG</pcr_primer_p1>
		<pcr_primer_p2>TATGTCATTTTTAGAGGGTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAGTATGGGAGATGGAGAGACCGTGAGGGGTGTCAATGAACAGAACGGCGTCAATGATCAGTTTCGGGGGCTATTTTTGGATTCTCTAGACCTACAAAACTTTGTACAACTTGAGAAAAAGTACAGTAACGTGAATTTGAAATGAATTTGAAGGAACATCTGGAGATCAGGACACACAGACAGACATTTCTTTTTAAAGCCGATTTTTGTCCATTTTAGCCCGTTTTTGACCCTCTAAAAATGACATA</canonical_amplicon>
		<polymorphic_amplicon>GAAAGTATGGGAGATGGAGAGACCGTGAGGGGTGTCAATGAACAGAACGGCGTCAATGATCAGTTTCGGGGGCTATTTTTGGATTCTCTAGACCTAMAAAACTTTGTACAACTTGAGAAAAAGTACAGTAACGTGAATTTGAAATGAATTTGAAGGAACATCTGGAGATCAGGACACACAGACAGACATTTCTTTTTAAAGCCGATTTTTGTCCATTTTAGCCCGTTTTTGACCCTCTAAAAATGACATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36824</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>152081</contig_pos>
        <strand>+</strand>
        <context>AAGGAACATC[C/T]GGAGATCAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGAGAAAAAGTACAGTAACGTGAATTTGAAATGAATTTGAAGGAACATC</left_flank>
        <right_flank>GGAGATCAGGACACACAGACAGACATTTCTTTTTAAAGCCGATTTTTGTC</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCTTAAGTCCATAGAAAAAGGGGTGGTCGTGGCGCCCGGTGGGTGGTGGCGCGGGAGCCTCCCCCACCATTGTGGTGTAGTGGTTGTGTGCTGGGATTCCATGCGAAGGGTTTCTGGTTCAATTCCCATCAAGTCTTAATCTTTATTGCTTTTTATGAGGACCATTTTCAAGGTCATCCCAAGTCCTAGAACCTTCTAGAAAGTATTTTTCCAGAGTTTTGGGTCCAAAAAAGTTAGTATTTTGACCTGAATATCAAATTTCACGTGAATGACATCACACTTTACTGTACTACGACTGTTTGACGCACTTTTCAGATAAAAATTGTACGAAAGGAGAAAGTATGGGAGATGGAGAGACCGTGAGGGGTGTCAATGAACAGAACGGCGTCAATGATCAGTTTCGGGGGCTATTTTTGGATTCTCTAGACCTACAAAACTTTGTACAACTTGAGAAAAAGTACAGTAACGTGAATTTGAAATGAATTTGAAGGAACATCTGGAGATCAGGACACACAGACAGACATTTCTTTTTAAAGCCGATTTTTGTCCATTTTAGCCCGTTTTTGACCCTCTAAAAATGACATATGGCCTTTTACAATGCTTTTTTTGTGTTTTTTCACACTAATTAGATTAATAGGCATGTTGAAAACCATAGAAAAACATACAAAAAAGGCGGCTTATCCGATTGCGTCATATAATTACAAAGGGAGGCGTATTAGAGTAATTAGGTCAACTGGGGAAAGGTCAAAAATGAAAATAATTGTTCATTCTCGACTCATTTGTGCATTTGCGACAAGAAAATTTCGGATTTTCAAAAAAAAAAAGATTTTTTTTGAAAATAATTTTTTTGAAAATTTTTTCTTTTGATCATAACGTTTTTCATTTTTGACCCATTCTCATGAAATGTATATTTTTGAAAACCTCAATGTTTCAGCTTTGAAATGAGTAAAATCATGACCTAGTTTCTCTCGAAAGAAGGGGCACGCGCCTTCGAGAGG</canonical>
            <polymorphic>CTTCTTAAGTCCATAGAAAAAGGGGTGGTCGTGGCGCCCGGTGGGTGGTGGCGCGGGAGCCTCCCCCACCATTGTGGTGTAGTGGTTGTGTGCTGGGATTCCATGCGAAGGGTTTCTGGTTCAATTCCCATCAAGTCTTAATCTTTATTGCTTTTTATGAGGACCATTTTCAAGGTCATCCCAAGTCCTAGAACCTTCTAGAAAGTATTTTTCCAGAGTTTTGGGTCCAAAAAAGTTAGTATTTTGACCTGAATATCAAATTTCACGTGAATGACATCACACTTTACTGTACTACGACTGTTTGACGCACTTTTCAGATAAAAATTGTACGAAAGGAGAAAGTATGGGAGATGGAGAGACCGTGAGGGGTGTCAATGAACAGAACGGCGTCAATGATCAGTTTCGGGGGCTATTTTTGGATTCTCTAGACCTACAAAACTTTGTACAACTTGAGAAAAAGTACAGTAACGTGAATTTGAAATGAATTTGAAGGAACATCYGGAGATCAGGACACACAGACAGACATTTCTTTTTAAAGCCGATTTTTGTCCATTTTAGCCCGTTTTTGACCCTCTAAAAATGACATATGGCCTTTTACAATGCTTTTTTTGTGTTTTTTCACACTAATTAGATTAATAGGCATGTTGAAAACCATAGAAAAACATACAAAAAAGGCGGCTTATCCGATTGCGTCATATAATTACAAAGGGAGGCGTATTAGAGTAATTAGGTCAACTGGGGAAAGGTCAAAAATGAAAATAATTGTTCATTCTCGACTCATTTGTGCATTTGCGACAAGAAAATTTCGGATTTTCAAAAAAAAAAAGATTTTTTTTGAAAATAATTTTTTTGAAAATTTTTTCTTTTGATCATAACGTTTTTCATTTTTGACCCATTCTCATGAAATGTATATTTTTGAAAACCTCAATGTTTCAGCTTTGAAATGAGTAAAATCATGACCTAGTTTCTCTCGAAAGAAGGGGCACGCGCCTTCGAGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTATTTTTGGATTCTCTAGACC</pcr_primer_p1>
		<pcr_primer_p2>CTATGGTTTTCAACATGCCTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTATTTTTGGATTCTCTAGACCTACAAAACTTTGTACAACTTGAGAAAAAGTACAGTAACGTGAATTTGAAATGAATTTGAAGGAACATCTGGAGATCAGGACACACAGACAGACATTTCTTTTTAAAGCCGATTTTTGTCCATTTTAGCCCGTTTTTGACCCTCTAAAAATGACATATGGCCTTTTACAATGCTTTTTTTGTGTTTTTTCACACTAATTAGATTAATAGGCATGTTGAAAACCATAG</canonical_amplicon>
		<polymorphic_amplicon>GCTATTTTTGGATTCTCTAGACCTACAAAACTTTGTACAACTTGAGAAAAAGTACAGTAACGTGAATTTGAAATGAATTTGAAGGAACATCYGGAGATCAGGACACACAGACAGACATTTCTTTTTAAAGCCGATTTTTGTCCATTTTAGCCCGTTTTTGACCCTCTAAAAATGACATATGGCCTTTTACAATGCTTTTTTTGTGTTTTTTCACACTAATTAGATTAATAGGCATGTTGAAAACCATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36825</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>152172</contig_pos>
        <strand>+</strand>
        <context>TGACATATGG[C/T]CTTTTACAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTTTTGTCCATTTTAGCCCGTTTTTGACCCTCTAAAAATGACATATGG</left_flank>
        <right_flank>CTTTTACAATGCTTTTTTTGTGTTTTTTCACACTAATTAGATTAATAGGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTGGGATTCCATGCGAAGGGTTTCTGGTTCAATTCCCATCAAGTCTTAATCTTTATTGCTTTTTATGAGGACCATTTTCAAGGTCATCCCAAGTCCTAGAACCTTCTAGAAAGTATTTTTCCAGAGTTTTGGGTCCAAAAAAGTTAGTATTTTGACCTGAATATCAAATTTCACGTGAATGACATCACACTTTACTGTACTACGACTGTTTGACGCACTTTTCAGATAAAAATTGTACGAAAGGAGAAAGTATGGGAGATGGAGAGACCGTGAGGGGTGTCAATGAACAGAACGGCGTCAATGATCAGTTTCGGGGGCTATTTTTGGATTCTCTAGACCTACAAAACTTTGTACAACTTGAGAAAAAGTACAGTAACGTGAATTTGAAATGAATTTGAAGGAACATCTGGAGATCAGGACACACAGACAGACATTTCTTTTTAAAGCCGATTTTTGTCCATTTTAGCCCGTTTTTGACCCTCTAAAAATGACATATGGCCTTTTACAATGCTTTTTTTGTGTTTTTTCACACTAATTAGATTAATAGGCATGTTGAAAACCATAGAAAAACATACAAAAAAGGCGGCTTATCCGATTGCGTCATATAATTACAAAGGGAGGCGTATTAGAGTAATTAGGTCAACTGGGGAAAGGTCAAAAATGAAAATAATTGTTCATTCTCGACTCATTTGTGCATTTGCGACAAGAAAATTTCGGATTTTCAAAAAAAAAAAGATTTTTTTTGAAAATAATTTTTTTGAAAATTTTTTCTTTTGATCATAACGTTTTTCATTTTTGACCCATTCTCATGAAATGTATATTTTTGAAAACCTCAATGTTTCAGCTTTGAAATGAGTAAAATCATGACCTAGTTTCTCTCGAAAGAAGGGGCACGCGCCTTCGAGAGGGTTACGGTATTAGAGTAATTGTTTGTTTTGATGATAACTTTGTTCATTGTCGGTCAATTTTTGTGTAACTTATATGTTTGGATTTCTCACA</canonical>
            <polymorphic>GCTGGGATTCCATGCGAAGGGTTTCTGGTTCAATTCCCATCAAGTCTTAATCTTTATTGCTTTTTATGAGGACCATTTTCAAGGTCATCCCAAGTCCTAGAACCTTCTAGAAAGTATTTTTCCAGAGTTTTGGGTCCAAAAAAGTTAGTATTTTGACCTGAATATCAAATTTCACGTGAATGACATCACACTTTACTGTACTACGACTGTTTGACGCACTTTTCAGATAAAAATTGTACGAAAGGAGAAAGTATGGGAGATGGAGAGACCGTGAGGGGTGTCAATGAACAGAACGGCGTCAATGATCAGTTTCGGGGGCTATTTTTGGATTCTCTAGACCTACAAAACTTTGTACAACTTGAGAAAAAGTACAGTAACGTGAATTTGAAATGAATTTGAAGGAACATCTGGAGATCAGGACACACAGACAGACATTTCTTTTTAAAGCCGATTTTTGTCCATTTTAGCCCGTTTTTGACCCTCTAAAAATGACATATGGYCTTTTACAATGCTTTTTTTGTGTTTTTTCACACTAATTAGATTAATAGGCATGTTGAAAACCATAGAAAAACATACAAAAAAGGCGGCTTATCCGATTGCGTCATATAATTACAAAGGGAGGCGTATTAGAGTAATTAGGTCAACTGGGGAAAGGTCAAAAATGAAAATAATTGTTCATTCTCGACTCATTTGTGCATTTGCGACAAGAAAATTTCGGATTTTCAAAAAAAAAAAGATTTTTTTTGAAAATAATTTTTTTGAAAATTTTTTCTTTTGATCATAACGTTTTTCATTTTTGACCCATTCTCATGAAATGTATATTTTTGAAAACCTCAATGTTTCAGCTTTGAAATGAGTAAAATCATGACCTAGTTTCTCTCGAAAGAAGGGGCACGCGCCTTCGAGAGGGTTACGGTATTAGAGTAATTGTTTGTTTTGATGATAACTTTGTTCATTGTCGGTCAATTTTTGTGTAACTTATATGTTTGGATTTCTCACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>318 258 155 129 88 32 20</canonical_bands>
                <polymorphic_bands>318 258 155 129 120 20</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTATTTTTGGATTCTCTAGACC</pcr_primer_p1>
		<pcr_primer_p2>CTATGGTTTTCAACATGCCTAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCTATTTTTGGATTCTCTAGACCTACAAAACTTTGTACAACTTGAGAAAAAGTACAGTAACGTGAATTTGAAATGAATTTGAAGGAACATCTGGAGATCAGGACACACAGACAGACATTTCTTTTTAAAGCCGATTTTTGTCCATTTTAGCCCGTTTTTGACCCTCTAAAAATGACATATGGCCTTTTACAATGCTTTTTTTGTGTTTTTTCACACTAATTAGATTAATAGGCATGTTGAAAACCATAG</canonical_amplicon>
		<polymorphic_amplicon>GCTATTTTTGGATTCTCTAGACCTACAAAACTTTGTACAACTTGAGAAAAAGTACAGTAACGTGAATTTGAAATGAATTTGAAGGAACATCTGGAGATCAGGACACACAGACAGACATTTCTTTTTAAAGCCGATTTTTGTCCATTTTAGCCCGTTTTTGACCCTCTAAAAATGACATATGGYCTTTTACAATGCTTTTTTTGTGTTTTTTCACACTAATTAGATTAATAGGCATGTTGAAAACCATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36826</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>152407</contig_pos>
        <strand></strand>
        <context>aaaaaaaaaa[A/G]rwtttttttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTCATTTGTGCATTTGCGACAAGAAAATTTCGGATTTTCAAAAAAAAAA</left_flank>
        <right_flank>GATTTTTTTTGAAAATAATTTTTTTGAAAATTTTTTCTTTTGATCATAAC</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACGAAAGGAGAAAGTATGGGAGATGGAGAGACCGTGAGGGGTGTCAATGAACAGAACGGCGTCAATGATCAGTTTCGGGGGCTATTTTTGGATTCTCTAGACCTACAAAACTTTGTACAACTTGAGAAAAAGTACAGTAACGTGAATTTGAAATGAATTTGAAGGAACATCTGGAGATCAGGACACACAGACAGACATTTCTTTTTAAAGCCGATTTTTGTCCATTTTAGCCCGTTTTTGACCCTCTAAAAATGACATATGGCCTTTTACAATGCTTTTTTTGTGTTTTTTCACACTAATTAGATTAATAGGCATGTTGAAAACCATAGAAAAACATACAAAAAAGGCGGCTTATCCGATTGCGTCATATAATTACAAAGGGAGGCGTATTAGAGTAATTAGGTCAACTGGGGAAAGGTCAAAAATGAAAATAATTGTTCATTCTCGACTCATTTGTGCATTTGCGACAAGAAAATTTCGGATTTTCAAAAAAAAAAAGATTTTTTTTGAAAATAATTTTTTTGAAAATTTTTTCTTTTGATCATAACGTTTTTCATTTTTGACCCATTCTCATGAAATGTATATTTTTGAAAACCTCAATGTTTCAGCTTTGAAATGAGTAAAATCATGACCTAGTTTCTCTCGAAAGAAGGGGCACGCGCCTTCGAGAGGGTTACGGTATTAGAGTAATTGTTTGTTTTGATGATAACTTTGTTCATTGTCGGTCAATTTTTGTGTAACTTATATGTTTGGATTTCTCACAAATTCTTCTTTCAAATGAGTTTAATCGTGATCTACTTTTTTTGATTTTTGCGCCATAAGCCTTTAAAAGACGCACTATGGAGACAGAGAAGAGGTACGGTAGTTTTTGTGATGGGGGTCTTATAATGTTAATGTTTTTATAGTATTATAAAATTTCAAAGCATAGTTATCCGATGGTTCGGATTCAGTGGCCTTTGTAAACGATAAAAAGAGATTTAGTCGAGAAAATTACTAAT</canonical>
            <polymorphic>GTACGAAAGGAGAAAGTATGGGAGATGGAGAGACCGTGAGGGGTGTCAATGAACAGAACGGCGTCAATGATCAGTTTCGGGGGCTATTTTTGGATTCTCTAGACCTACAAAACTTTGTACAACTTGAGAAAAAGTACAGTAACGTGAATTTGAAATGAATTTGAAGGAACATCTGGAGATCAGGACACACAGACAGACATTTCTTTTTAAAGCCGATTTTTGTCCATTTTAGCCCGTTTTTGACCCTCTAAAAATGACATATGGCCTTTTACAATGCTTTTTTTGTGTTTTTTCACACTAATTAGATTAATAGGCATGTTGAAAACCATAGAAAAACATACAAAAAAGGCGGCTTATCCGATTGCGTCATATAATTACAAAGGGAGGCGTATTAGAGTAATTAGGTCAACTGGGGAAAGGTCAAAAATGAAAATAATTGTTCATTCTCGACTCATTTGTGCATTTGCGACAAGAAAATTTCGGATTTTCAAAAAAAAAARGATTTTTTTTGAAAATAATTTTTTTGAAAATTTTTTCTTTTGATCATAACGTTTTTCATTTTTGACCCATTCTCATGAAATGTATATTTTTGAAAACCTCAATGTTTCAGCTTTGAAATGAGTAAAATCATGACCTAGTTTCTCTCGAAAGAAGGGGCACGCGCCTTCGAGAGGGTTACGGTATTAGAGTAATTGTTTGTTTTGATGATAACTTTGTTCATTGTCGGTCAATTTTTGTGTAACTTATATGTTTGGATTTCTCACAAATTCTTCTTTCAAATGAGTTTAATCGTGATCTACTTTTTTTGATTTTTGCGCCATAAGCCTTTAAAAGACGCACTATGGAGACAGAGAAGAGGTACGGTAGTTTTTGTGATGGGGGTCTTATAATGTTAATGTTTTTATAGTATTATAAAATTTCAAAGCATAGTTATCCGATGGTTCGGATTCAGTGGCCTTTGTAAACGATAAAAAGAGATTTAGTCGAGAAAATTACTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCATTCTCGACTCATTTGTG</pcr_primer_p1>
		<pcr_primer_p2>TTACTCTAATACCGTAACCCTCTC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTCATTCTCGACTCATTTGTGCATTTGCGACAAGAAAATTTCGGATTTTCAAAAAAAAAAAGATTTTTTTTGAAAATAATTTTTTTGAAAATTTTTTCTTTTGATCATAACGTTTTTCATTTTTGACCCATTCTCATGAAATGTATATTTTTGAAAACCTCAATGTTTCAGCTTTGAAATGAGTAAAATCATGACCTAGTTTCTCTCGAAAGAAGGGGCACGCGCCTTCGAGAGGGTTACGGTATTAGAGTAA</canonical_amplicon>
		<polymorphic_amplicon>TTCATTCTCGACTCATTTGTGCATTTGCGACAAGAAAATTTCGGATTTTCAAAAAAAAAARGATTTTTTTTGAAAATAATTTTTTTGAAAATTTTTTCTTTTGATCATAACGTTTTTCATTTTTGACCCATTCTCATGAAATGTATATTTTTGAAAACCTCAATGTTTCAGCTTTGAAATGAGTAAAATCATGACCTAGTTTCTCTCGAAAGAAGGGGCACGCGCCTTCGAGAGGGTTACGGTATTAGAGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36827</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>152408</contig_pos>
        <strand></strand>
        <context>aaaaaaaaar[G/A]wttttttttg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTCATTTGTGCATTTGCGACAAGAAAATTTCGGATTTTCAAAAAAAAAAA</left_flank>
        <right_flank>ATTTTTTTTGAAAATAATTTTTTTGAAAATTTTTTCTTTTGATCATAACG</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACGAAAGGAGAAAGTATGGGAGATGGAGAGACCGTGAGGGGTGTCAATGAACAGAACGGCGTCAATGATCAGTTTCGGGGGCTATTTTTGGATTCTCTAGACCTACAAAACTTTGTACAACTTGAGAAAAAGTACAGTAACGTGAATTTGAAATGAATTTGAAGGAACATCTGGAGATCAGGACACACAGACAGACATTTCTTTTTAAAGCCGATTTTTGTCCATTTTAGCCCGTTTTTGACCCTCTAAAAATGACATATGGCCTTTTACAATGCTTTTTTTGTGTTTTTTCACACTAATTAGATTAATAGGCATGTTGAAAACCATAGAAAAACATACAAAAAAGGCGGCTTATCCGATTGCGTCATATAATTACAAAGGGAGGCGTATTAGAGTAATTAGGTCAACTGGGGAAAGGTCAAAAATGAAAATAATTGTTCATTCTCGACTCATTTGTGCATTTGCGACAAGAAAATTTCGGATTTTCAAAAAAAAAAAGATTTTTTTTGAAAATAATTTTTTTGAAAATTTTTTCTTTTGATCATAACGTTTTTCATTTTTGACCCATTCTCATGAAATGTATATTTTTGAAAACCTCAATGTTTCAGCTTTGAAATGAGTAAAATCATGACCTAGTTTCTCTCGAAAGAAGGGGCACGCGCCTTCGAGAGGGTTACGGTATTAGAGTAATTGTTTGTTTTGATGATAACTTTGTTCATTGTCGGTCAATTTTTGTGTAACTTATATGTTTGGATTTCTCACAAATTCTTCTTTCAAATGAGTTTAATCGTGATCTACTTTTTTTGATTTTTGCGCCATAAGCCTTTAAAAGACGCACTATGGAGACAGAGAAGAGGTACGGTAGTTTTTGTGATGGGGGTCTTATAATGTTAATGTTTTTATAGTATTATAAAATTTCAAAGCATAGTTATCCGATGGTTCGGATTCAGTGGCCTTTGTAAACGATAAAAAGAGATTTAGTCGAGAAAATTACTAATT</canonical>
            <polymorphic>TACGAAAGGAGAAAGTATGGGAGATGGAGAGACCGTGAGGGGTGTCAATGAACAGAACGGCGTCAATGATCAGTTTCGGGGGCTATTTTTGGATTCTCTAGACCTACAAAACTTTGTACAACTTGAGAAAAAGTACAGTAACGTGAATTTGAAATGAATTTGAAGGAACATCTGGAGATCAGGACACACAGACAGACATTTCTTTTTAAAGCCGATTTTTGTCCATTTTAGCCCGTTTTTGACCCTCTAAAAATGACATATGGCCTTTTACAATGCTTTTTTTGTGTTTTTTCACACTAATTAGATTAATAGGCATGTTGAAAACCATAGAAAAACATACAAAAAAGGCGGCTTATCCGATTGCGTCATATAATTACAAAGGGAGGCGTATTAGAGTAATTAGGTCAACTGGGGAAAGGTCAAAAATGAAAATAATTGTTCATTCTCGACTCATTTGTGCATTTGCGACAAGAAAATTTCGGATTTTCAAAAAAAAAAARATTTTTTTTGAAAATAATTTTTTTGAAAATTTTTTCTTTTGATCATAACGTTTTTCATTTTTGACCCATTCTCATGAAATGTATATTTTTGAAAACCTCAATGTTTCAGCTTTGAAATGAGTAAAATCATGACCTAGTTTCTCTCGAAAGAAGGGGCACGCGCCTTCGAGAGGGTTACGGTATTAGAGTAATTGTTTGTTTTGATGATAACTTTGTTCATTGTCGGTCAATTTTTGTGTAACTTATATGTTTGGATTTCTCACAAATTCTTCTTTCAAATGAGTTTAATCGTGATCTACTTTTTTTGATTTTTGCGCCATAAGCCTTTAAAAGACGCACTATGGAGACAGAGAAGAGGTACGGTAGTTTTTGTGATGGGGGTCTTATAATGTTAATGTTTTTATAGTATTATAAAATTTCAAAGCATAGTTATCCGATGGTTCGGATTCAGTGGCCTTTGTAAACGATAAAAAGAGATTTAGTCGAGAAAATTACTAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCATTCTCGACTCATTTGTG</pcr_primer_p1>
		<pcr_primer_p2>TTACTCTAATACCGTAACCCTCTC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTCATTCTCGACTCATTTGTGCATTTGCGACAAGAAAATTTCGGATTTTCAAAAAAAAAAAGATTTTTTTTGAAAATAATTTTTTTGAAAATTTTTTCTTTTGATCATAACGTTTTTCATTTTTGACCCATTCTCATGAAATGTATATTTTTGAAAACCTCAATGTTTCAGCTTTGAAATGAGTAAAATCATGACCTAGTTTCTCTCGAAAGAAGGGGCACGCGCCTTCGAGAGGGTTACGGTATTAGAGTAA</canonical_amplicon>
		<polymorphic_amplicon>TTCATTCTCGACTCATTTGTGCATTTGCGACAAGAAAATTTCGGATTTTCAAAAAAAAAAARATTTTTTTTGAAAATAATTTTTTTGAAAATTTTTTCTTTTGATCATAACGTTTTTCATTTTTGACCCATTCTCATGAAATGTATATTTTTGAAAACCTCAATGTTTCAGCTTTGAAATGAGTAAAATCATGACCTAGTTTCTCTCGAAAGAAGGGGCACGCGCCTTCGAGAGGGTTACGGTATTAGAGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36828</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>152409</contig_pos>
        <strand></strand>
        <context>aaaaaaaarr[A/T]ttttttttga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCATTTGTGCATTTGCGACAAGAAAATTTCGGATTTTCAAAAAAAAAAAG</left_flank>
        <right_flank>TTTTTTTTGAAAATAATTTTTTTGAAAATTTTTTCTTTTGATCATAACGT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGAAAGGAGAAAGTATGGGAGATGGAGAGACCGTGAGGGGTGTCAATGAACAGAACGGCGTCAATGATCAGTTTCGGGGGCTATTTTTGGATTCTCTAGACCTACAAAACTTTGTACAACTTGAGAAAAAGTACAGTAACGTGAATTTGAAATGAATTTGAAGGAACATCTGGAGATCAGGACACACAGACAGACATTTCTTTTTAAAGCCGATTTTTGTCCATTTTAGCCCGTTTTTGACCCTCTAAAAATGACATATGGCCTTTTACAATGCTTTTTTTGTGTTTTTTCACACTAATTAGATTAATAGGCATGTTGAAAACCATAGAAAAACATACAAAAAAGGCGGCTTATCCGATTGCGTCATATAATTACAAAGGGAGGCGTATTAGAGTAATTAGGTCAACTGGGGAAAGGTCAAAAATGAAAATAATTGTTCATTCTCGACTCATTTGTGCATTTGCGACAAGAAAATTTCGGATTTTCAAAAAAAAAAAGATTTTTTTTGAAAATAATTTTTTTGAAAATTTTTTCTTTTGATCATAACGTTTTTCATTTTTGACCCATTCTCATGAAATGTATATTTTTGAAAACCTCAATGTTTCAGCTTTGAAATGAGTAAAATCATGACCTAGTTTCTCTCGAAAGAAGGGGCACGCGCCTTCGAGAGGGTTACGGTATTAGAGTAATTGTTTGTTTTGATGATAACTTTGTTCATTGTCGGTCAATTTTTGTGTAACTTATATGTTTGGATTTCTCACAAATTCTTCTTTCAAATGAGTTTAATCGTGATCTACTTTTTTTGATTTTTGCGCCATAAGCCTTTAAAAGACGCACTATGGAGACAGAGAAGAGGTACGGTAGTTTTTGTGATGGGGGTCTTATAATGTTAATGTTTTTATAGTATTATAAAATTTCAAAGCATAGTTATCCGATGGTTCGGATTCAGTGGCCTTTGTAAACGATAAAAAGAGATTTAGTCGAGAAAATTACTAATTT</canonical>
            <polymorphic>ACGAAAGGAGAAAGTATGGGAGATGGAGAGACCGTGAGGGGTGTCAATGAACAGAACGGCGTCAATGATCAGTTTCGGGGGCTATTTTTGGATTCTCTAGACCTACAAAACTTTGTACAACTTGAGAAAAAGTACAGTAACGTGAATTTGAAATGAATTTGAAGGAACATCTGGAGATCAGGACACACAGACAGACATTTCTTTTTAAAGCCGATTTTTGTCCATTTTAGCCCGTTTTTGACCCTCTAAAAATGACATATGGCCTTTTACAATGCTTTTTTTGTGTTTTTTCACACTAATTAGATTAATAGGCATGTTGAAAACCATAGAAAAACATACAAAAAAGGCGGCTTATCCGATTGCGTCATATAATTACAAAGGGAGGCGTATTAGAGTAATTAGGTCAACTGGGGAAAGGTCAAAAATGAAAATAATTGTTCATTCTCGACTCATTTGTGCATTTGCGACAAGAAAATTTCGGATTTTCAAAAAAAAAAAGWTTTTTTTTGAAAATAATTTTTTTGAAAATTTTTTCTTTTGATCATAACGTTTTTCATTTTTGACCCATTCTCATGAAATGTATATTTTTGAAAACCTCAATGTTTCAGCTTTGAAATGAGTAAAATCATGACCTAGTTTCTCTCGAAAGAAGGGGCACGCGCCTTCGAGAGGGTTACGGTATTAGAGTAATTGTTTGTTTTGATGATAACTTTGTTCATTGTCGGTCAATTTTTGTGTAACTTATATGTTTGGATTTCTCACAAATTCTTCTTTCAAATGAGTTTAATCGTGATCTACTTTTTTTGATTTTTGCGCCATAAGCCTTTAAAAGACGCACTATGGAGACAGAGAAGAGGTACGGTAGTTTTTGTGATGGGGGTCTTATAATGTTAATGTTTTTATAGTATTATAAAATTTCAAAGCATAGTTATCCGATGGTTCGGATTCAGTGGCCTTTGTAAACGATAAAAAGAGATTTAGTCGAGAAAATTACTAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCATTCTCGACTCATTTGTG</pcr_primer_p1>
		<pcr_primer_p2>TTACTCTAATACCGTAACCCTCTC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTCATTCTCGACTCATTTGTGCATTTGCGACAAGAAAATTTCGGATTTTCAAAAAAAAAAAGATTTTTTTTGAAAATAATTTTTTTGAAAATTTTTTCTTTTGATCATAACGTTTTTCATTTTTGACCCATTCTCATGAAATGTATATTTTTGAAAACCTCAATGTTTCAGCTTTGAAATGAGTAAAATCATGACCTAGTTTCTCTCGAAAGAAGGGGCACGCGCCTTCGAGAGGGTTACGGTATTAGAGTAA</canonical_amplicon>
		<polymorphic_amplicon>TTCATTCTCGACTCATTTGTGCATTTGCGACAAGAAAATTTCGGATTTTCAAAAAAAAAAAGWTTTTTTTTGAAAATAATTTTTTTGAAAATTTTTTCTTTTGATCATAACGTTTTTCATTTTTGACCCATTCTCATGAAATGTATATTTTTGAAAACCTCAATGTTTCAGCTTTGAAATGAGTAAAATCATGACCTAGTTTCTCTCGAAAGAAGGGGCACGCGCCTTCGAGAGGGTTACGGTATTAGAGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36829</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>152432</contig_pos>
        <strand></strand>
        <context>ataatttttt[T/G]gaaaattttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AAATTTCGGATTTTCAAAAAAAAAAAGATTTTTTTTGAAAATAATTTTTT</left_flank>
        <right_flank>GAAAATTTTTTCTTTTGATCATAACGTTTTTCATTTTTGACCCATTCTCA</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAGAGACCGTGAGGGGTGTCAATGAACAGAACGGCGTCAATGATCAGTTTCGGGGGCTATTTTTGGATTCTCTAGACCTACAAAACTTTGTACAACTTGAGAAAAAGTACAGTAACGTGAATTTGAAATGAATTTGAAGGAACATCTGGAGATCAGGACACACAGACAGACATTTCTTTTTAAAGCCGATTTTTGTCCATTTTAGCCCGTTTTTGACCCTCTAAAAATGACATATGGCCTTTTACAATGCTTTTTTTGTGTTTTTTCACACTAATTAGATTAATAGGCATGTTGAAAACCATAGAAAAACATACAAAAAAGGCGGCTTATCCGATTGCGTCATATAATTACAAAGGGAGGCGTATTAGAGTAATTAGGTCAACTGGGGAAAGGTCAAAAATGAAAATAATTGTTCATTCTCGACTCATTTGTGCATTTGCGACAAGAAAATTTCGGATTTTCAAAAAAAAAAAGATTTTTTTTGAAAATAATTTTTTTGAAAATTTTTTCTTTTGATCATAACGTTTTTCATTTTTGACCCATTCTCATGAAATGTATATTTTTGAAAACCTCAATGTTTCAGCTTTGAAATGAGTAAAATCATGACCTAGTTTCTCTCGAAAGAAGGGGCACGCGCCTTCGAGAGGGTTACGGTATTAGAGTAATTGTTTGTTTTGATGATAACTTTGTTCATTGTCGGTCAATTTTTGTGTAACTTATATGTTTGGATTTCTCACAAATTCTTCTTTCAAATGAGTTTAATCGTGATCTACTTTTTTTGATTTTTGCGCCATAAGCCTTTAAAAGACGCACTATGGAGACAGAGAAGAGGTACGGTAGTTTTTGTGATGGGGGTCTTATAATGTTAATGTTTTTATAGTATTATAAAATTTCAAAGCATAGTTATCCGATGGTTCGGATTCAGTGGCCTTTGTAAACGATAAAAAGAGATTTAGTCGAGAAAATTACTAATTTATCCTTATCCAAGGACTAAAATA</canonical>
            <polymorphic>TGGAGAGACCGTGAGGGGTGTCAATGAACAGAACGGCGTCAATGATCAGTTTCGGGGGCTATTTTTGGATTCTCTAGACCTACAAAACTTTGTACAACTTGAGAAAAAGTACAGTAACGTGAATTTGAAATGAATTTGAAGGAACATCTGGAGATCAGGACACACAGACAGACATTTCTTTTTAAAGCCGATTTTTGTCCATTTTAGCCCGTTTTTGACCCTCTAAAAATGACATATGGCCTTTTACAATGCTTTTTTTGTGTTTTTTCACACTAATTAGATTAATAGGCATGTTGAAAACCATAGAAAAACATACAAAAAAGGCGGCTTATCCGATTGCGTCATATAATTACAAAGGGAGGCGTATTAGAGTAATTAGGTCAACTGGGGAAAGGTCAAAAATGAAAATAATTGTTCATTCTCGACTCATTTGTGCATTTGCGACAAGAAAATTTCGGATTTTCAAAAAAAAAAAGATTTTTTTTGAAAATAATTTTTTKGAAAATTTTTTCTTTTGATCATAACGTTTTTCATTTTTGACCCATTCTCATGAAATGTATATTTTTGAAAACCTCAATGTTTCAGCTTTGAAATGAGTAAAATCATGACCTAGTTTCTCTCGAAAGAAGGGGCACGCGCCTTCGAGAGGGTTACGGTATTAGAGTAATTGTTTGTTTTGATGATAACTTTGTTCATTGTCGGTCAATTTTTGTGTAACTTATATGTTTGGATTTCTCACAAATTCTTCTTTCAAATGAGTTTAATCGTGATCTACTTTTTTTGATTTTTGCGCCATAAGCCTTTAAAAGACGCACTATGGAGACAGAGAAGAGGTACGGTAGTTTTTGTGATGGGGGTCTTATAATGTTAATGTTTTTATAGTATTATAAAATTTCAAAGCATAGTTATCCGATGGTTCGGATTCAGTGGCCTTTGTAAACGATAAAAAGAGATTTAGTCGAGAAAATTACTAATTTATCCTTATCCAAGGACTAAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCATTCTCGACTCATTTGTG</pcr_primer_p1>
		<pcr_primer_p2>TTACTCTAATACCGTAACCCTCTC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTCATTCTCGACTCATTTGTGCATTTGCGACAAGAAAATTTCGGATTTTCAAAAAAAAAAAGATTTTTTTTGAAAATAATTTTTTTGAAAATTTTTTCTTTTGATCATAACGTTTTTCATTTTTGACCCATTCTCATGAAATGTATATTTTTGAAAACCTCAATGTTTCAGCTTTGAAATGAGTAAAATCATGACCTAGTTTCTCTCGAAAGAAGGGGCACGCGCCTTCGAGAGGGTTACGGTATTAGAGTAA</canonical_amplicon>
		<polymorphic_amplicon>TTCATTCTCGACTCATTTGTGCATTTGCGACAAGAAAATTTCGGATTTTCAAAAAAAAAAAGATTTTTTTTGAAAATAATTTTTTKGAAAATTTTTTCTTTTGATCATAACGTTTTTCATTTTTGACCCATTCTCATGAAATGTATATTTTTGAAAACCTCAATGTTTCAGCTTTGAAATGAGTAAAATCATGACCTAGTTTCTCTCGAAAGAAGGGGCACGCGCCTTCGAGAGGGTTACGGTATTAGAGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36830</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>155750</contig_pos>
        <strand>+</strand>
        <context>GAAAAATGTA[A/T]TTAGATRATA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAGTATCGCGAGACAATGGGAAATGCTCAGTGAGCAAGAGAAAAATGTA</left_flank>
        <right_flank>TTAGATAATAATTAGAAGATAATTAAGGATAATTTAATATTTCAGATTTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATGAACAAAGTTATGGGGATTGGAAAATTTACATTTTTTCAAAAATTTCAAAAAATTTTTTTTTCAAAAATCCATAACTTTTTTTATTTTCCGCCAAATTTTATGATTTTTATACCAAAATGTAGGAAATTTTATGGGCTTTTAGAAAATGTATAATGTTAAACATATTATTTTAGTGTTAGTGTTGGTTTTTCAAAATTTCCCTACACACTCCTTATTTTGGATTTTTAAATTTTTAAATTTCATAACTTTTTCGATATTTTTACGATTTTAATGTTTTTTATACTCAAATGTCGAAAATTTTATGGACTTTTTAAAAATATATACCACTAATATTCAAATGTCATAATTATCCAGATCCACGTCCGCCTACGCTCTCTTCTTCCGTGAGAAGCAGTCGATGGAGAAACGGGCGGCGCCATACGCGAATTTCGGTCAAATTTCACAAAGTATCGCGAGACAATGGGAAATGCTCAGTGAGCAAGAGAAAAATGTATTTAGATAATAATTAGAAGATAATTAAGGATAATTTAATATTTCAGATTTATAAGCAGCGATGTGAGAAAAGCCGAAAAACAAGCATCGCAAATGCCGTGGAAGAGAGAGCCAGGAAGTTGATGATGGCTGCTACACAGAAACTACAGTAATCCGCTATATTCTACAGTAATCTCTTTTAATTACTGTTTCCTGTCCTTATTGTAGATTGTGATTAAAATGAACTTTTTTTTCCAATTTCAAAGTTTGAGTGTCATTTTGAAAAATTGTTCAACAAACGAGTTTTGGGGCATAGGTTCTGGAAATTTTGAAAGTATCTTCTAACCAAAAAGTTTTAGAATTTTTTTCCCAACATTTTCTGAAAAGATCAACTTTGAAAAGTTCATATTTGTGTTTCATATTCCGGAAGCAGTGCTCATCTTTCCTAGTGTTCTAATAAACCTATTTTTGACTTATTCCAATTTTTCAGTGTTCGTTTTTCGAAAATGTTTTGTGTGCTCTG</canonical>
            <polymorphic>AAAATGAACAAAGTTATGGGGATTGGAAAATTTACATTTTTTCAAAAATTTCAAAAAATTTTTTTTTCAAAAATCCATAACTTTTTTTATTTTCCGCCAAATTTTATGATTTTTATACCAAAATGTAGGAAATTTTATGGGCTTTTAGAAAATGTATAATGTTAAACATATTATTTTAGTGTTAGTGTTGGTTTTTCAAAATTTCCCTACACACTCCTTATTTTGGATTTTTAAATTTTTAAATTTCATAACTTTTTCGATATTTTTACGATTTTAATGTTTTTTATACTCAAATGTCGAAAATTTTATGGACTTTTTAAAAATATATACCACTAATATTCAAATGTCATAATTATCCAGATCCACGTCCGCCTACGCTCTCTTCTTCCGTGAGAAGCAGTCGATGGAGAAACGGGCGGCGCCATACGCGAATTTCGGTCAAATTTCACAAAGTATCGCGAGACAATGGGAAATGCTCAGTGAGCAAGAGAAAAATGTAWTTAGATAATAATTAGAAGATAATTAAGGATAATTTAATATTTCAGATTTATAAGCAGCGATGTGAGAAAAGCCGAAAAACAAGCATCGCAAATGCCGTGGAAGAGAGAGCCAGGAAGTTGATGATGGCTGCTACACAGAAACTACAGTAATCCGCTATATTCTACAGTAATCTCTTTTAATTACTGTTTCCTGTCCTTATTGTAGATTGTGATTAAAATGAACTTTTTTTTCCAATTTCAAAGTTTGAGTGTCATTTTGAAAAATTGTTCAACAAACGAGTTTTGGGGCATAGGTTCTGGAAATTTTGAAAGTATCTTCTAACCAAAAAGTTTTAGAATTTTTTTCCCAACATTTTCTGAAAAGATCAACTTTGAAAAGTTCATATTTGTGTTTCATATTCCGGAAGCAGTGCTCATCTTTCCTAGTGTTCTAATAAACCTATTTTTGACTTATTCCAATTTTTCAGTGTTCGTTTTTCGAAAATGTTTTGTGTGCTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGAAAATTTTATGGACTTTTTA</pcr_primer_p1>
		<pcr_primer_p2>TCGCTGCTTATAAATCTGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>TCGAAAATTTTATGGACTTTTTAAAAATATATACCACTAATATTCAAATGTCATAATTATCCAGATCCACGTCCGCCTACGCTCTCTTCTTCCGTGAGAAGCAGTCGATGGAGAAACGGGCGGCGCCATACGCGAATTTCGGTCAAATTTCACAAAGTATCGCGAGACAATGGGAAATGCTCAGTGAGCAAGAGAAAAATGTATTTAGATAATAATTAGAAGATAATTAAGGATAATTTAATATTTCAGATTTATAAGCAGCGA</canonical_amplicon>
		<polymorphic_amplicon>TCGAAAATTTTATGGACTTTTTAAAAATATATACCACTAATATTCAAATGTCATAATTATCCAGATCCACGTCCGCCTACGCTCTCTTCTTCCGTGAGAAGCAGTCGATGGAGAAACGGGCGGCGCCATACGCGAATTTCGGTCAAATTTCACAAAGTATCGCGAGACAATGGGAAATGCTCAGTGAGCAAGAGAAAAATGTAWTTAGATAATAATTAGAAGATAATTAAGGATAATTTAATATTTCAGATTTATAAGCAGCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36831</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>155757</contig_pos>
        <strand>+</strand>
        <context>GTAWTTAGAT[A/G]ATAATTARAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCGAGACAATGGGAAATGCTCAGTGAGCAAGAGAAAAATGTATTTAGAT</left_flank>
        <right_flank>ATAATTAGAAGATAATTAAGGATAATTTAATATTTCAGATTTATAAGCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAAGTTATGGGGATTGGAAAATTTACATTTTTTCAAAAATTTCAAAAAATTTTTTTTTCAAAAATCCATAACTTTTTTTATTTTCCGCCAAATTTTATGATTTTTATACCAAAATGTAGGAAATTTTATGGGCTTTTAGAAAATGTATAATGTTAAACATATTATTTTAGTGTTAGTGTTGGTTTTTCAAAATTTCCCTACACACTCCTTATTTTGGATTTTTAAATTTTTAAATTTCATAACTTTTTCGATATTTTTACGATTTTAATGTTTTTTATACTCAAATGTCGAAAATTTTATGGACTTTTTAAAAATATATACCACTAATATTCAAATGTCATAATTATCCAGATCCACGTCCGCCTACGCTCTCTTCTTCCGTGAGAAGCAGTCGATGGAGAAACGGGCGGCGCCATACGCGAATTTCGGTCAAATTTCACAAAGTATCGCGAGACAATGGGAAATGCTCAGTGAGCAAGAGAAAAATGTATTTAGATAATAATTAGAAGATAATTAAGGATAATTTAATATTTCAGATTTATAAGCAGCGATGTGAGAAAAGCCGAAAAACAAGCATCGCAAATGCCGTGGAAGAGAGAGCCAGGAAGTTGATGATGGCTGCTACACAGAAACTACAGTAATCCGCTATATTCTACAGTAATCTCTTTTAATTACTGTTTCCTGTCCTTATTGTAGATTGTGATTAAAATGAACTTTTTTTTCCAATTTCAAAGTTTGAGTGTCATTTTGAAAAATTGTTCAACAAACGAGTTTTGGGGCATAGGTTCTGGAAATTTTGAAAGTATCTTCTAACCAAAAAGTTTTAGAATTTTTTTCCCAACATTTTCTGAAAAGATCAACTTTGAAAAGTTCATATTTGTGTTTCATATTCCGGAAGCAGTGCTCATCTTTCCTAGTGTTCTAATAAACCTATTTTTGACTTATTCCAATTTTTCAGTGTTCGTTTTTCGAAAATGTTTTGTGTGCTCTGATTTTGA</canonical>
            <polymorphic>ACAAAGTTATGGGGATTGGAAAATTTACATTTTTTCAAAAATTTCAAAAAATTTTTTTTTCAAAAATCCATAACTTTTTTTATTTTCCGCCAAATTTTATGATTTTTATACCAAAATGTAGGAAATTTTATGGGCTTTTAGAAAATGTATAATGTTAAACATATTATTTTAGTGTTAGTGTTGGTTTTTCAAAATTTCCCTACACACTCCTTATTTTGGATTTTTAAATTTTTAAATTTCATAACTTTTTCGATATTTTTACGATTTTAATGTTTTTTATACTCAAATGTCGAAAATTTTATGGACTTTTTAAAAATATATACCACTAATATTCAAATGTCATAATTATCCAGATCCACGTCCGCCTACGCTCTCTTCTTCCGTGAGAAGCAGTCGATGGAGAAACGGGCGGCGCCATACGCGAATTTCGGTCAAATTTCACAAAGTATCGCGAGACAATGGGAAATGCTCAGTGAGCAAGAGAAAAATGTATTTAGATRATAATTAGAAGATAATTAAGGATAATTTAATATTTCAGATTTATAAGCAGCGATGTGAGAAAAGCCGAAAAACAAGCATCGCAAATGCCGTGGAAGAGAGAGCCAGGAAGTTGATGATGGCTGCTACACAGAAACTACAGTAATCCGCTATATTCTACAGTAATCTCTTTTAATTACTGTTTCCTGTCCTTATTGTAGATTGTGATTAAAATGAACTTTTTTTTCCAATTTCAAAGTTTGAGTGTCATTTTGAAAAATTGTTCAACAAACGAGTTTTGGGGCATAGGTTCTGGAAATTTTGAAAGTATCTTCTAACCAAAAAGTTTTAGAATTTTTTTCCCAACATTTTCTGAAAAGATCAACTTTGAAAAGTTCATATTTGTGTTTCATATTCCGGAAGCAGTGCTCATCTTTCCTAGTGTTCTAATAAACCTATTTTTGACTTATTCCAATTTTTCAGTGTTCGTTTTTCGAAAATGTTTTGTGTGCTCTGATTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTCATAATTATCCAGATCCAC</pcr_primer_p1>
		<pcr_primer_p2>CTCACATCGCTGCTTATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>ATGTCATAATTATCCAGATCCACGTCCGCCTACGCTCTCTTCTTCCGTGAGAAGCAGTCGATGGAGAAACGGGCGGCGCCATACGCGAATTTCGGTCAAATTTCACAAAGTATCGCGAGACAATGGGAAATGCTCAGTGAGCAAGAGAAAAATGTATTTAGATAATAATTAGAAGATAATTAAGGATAATTTAATATTTCAGATTTATAAGCAGCGATGTGAG</canonical_amplicon>
		<polymorphic_amplicon>ATGTCATAATTATCCAGATCCACGTCCGCCTACGCTCTCTTCTTCCGTGAGAAGCAGTCGATGGAGAAACGGGCGGCGCCATACGCGAATTTCGGTCAAATTTCACAAAGTATCGCGAGACAATGGGAAATGCTCAGTGAGCAAGAGAAAAATGTATTTAGATRATAATTAGAAGATAATTAAGGATAATTTAATATTTCAGATTTATAAGCAGCGATGTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36832</snp_id>
        <super_contig>c011401294.Contig1</super_contig>
        <contig_pos>155765</contig_pos>
        <strand>+</strand>
        <context>ATRATAATTA[A/G]AAGATAATTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGGGAAATGCTCAGTGAGCAAGAGAAAAATGTATTTAGATAATAATTA</left_flank>
        <right_flank>AAGATAATTAAGGATAATTTAATATTTCAGATTTATAAGCAGCGATGTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGGGATTGGAAAATTTACATTTTTTCAAAAATTTCAAAAAATTTTTTTTTCAAAAATCCATAACTTTTTTTATTTTCCGCCAAATTTTATGATTTTTATACCAAAATGTAGGAAATTTTATGGGCTTTTAGAAAATGTATAATGTTAAACATATTATTTTAGTGTTAGTGTTGGTTTTTCAAAATTTCCCTACACACTCCTTATTTTGGATTTTTAAATTTTTAAATTTCATAACTTTTTCGATATTTTTACGATTTTAATGTTTTTTATACTCAAATGTCGAAAATTTTATGGACTTTTTAAAAATATATACCACTAATATTCAAATGTCATAATTATCCAGATCCACGTCCGCCTACGCTCTCTTCTTCCGTGAGAAGCAGTCGATGGAGAAACGGGCGGCGCCATACGCGAATTTCGGTCAAATTTCACAAAGTATCGCGAGACAATGGGAAATGCTCAGTGAGCAAGAGAAAAATGTATTTAGATAATAATTAGAAGATAATTAAGGATAATTTAATATTTCAGATTTATAAGCAGCGATGTGAGAAAAGCCGAAAAACAAGCATCGCAAATGCCGTGGAAGAGAGAGCCAGGAAGTTGATGATGGCTGCTACACAGAAACTACAGTAATCCGCTATATTCTACAGTAATCTCTTTTAATTACTGTTTCCTGTCCTTATTGTAGATTGTGATTAAAATGAACTTTTTTTTCCAATTTCAAAGTTTGAGTGTCATTTTGAAAAATTGTTCAACAAACGAGTTTTGGGGCATAGGTTCTGGAAATTTTGAAAGTATCTTCTAACCAAAAAGTTTTAGAATTTTTTTCCCAACATTTTCTGAAAAGATCAACTTTGAAAAGTTCATATTTGTGTTTCATATTCCGGAAGCAGTGCTCATCTTTCCTAGTGTTCTAATAAACCTATTTTTGACTTATTCCAATTTTTCAGTGTTCGTTTTTCGAAAATGTTTTGTGTGCTCTGATTTTGAAGAGTAAT</canonical>
            <polymorphic>ATGGGGATTGGAAAATTTACATTTTTTCAAAAATTTCAAAAAATTTTTTTTTCAAAAATCCATAACTTTTTTTATTTTCCGCCAAATTTTATGATTTTTATACCAAAATGTAGGAAATTTTATGGGCTTTTAGAAAATGTATAATGTTAAACATATTATTTTAGTGTTAGTGTTGGTTTTTCAAAATTTCCCTACACACTCCTTATTTTGGATTTTTAAATTTTTAAATTTCATAACTTTTTCGATATTTTTACGATTTTAATGTTTTTTATACTCAAATGTCGAAAATTTTATGGACTTTTTAAAAATATATACCACTAATATTCAAATGTCATAATTATCCAGATCCACGTCCGCCTACGCTCTCTTCTTCCGTGAGAAGCAGTCGATGGAGAAACGGGCGGCGCCATACGCGAATTTCGGTCAAATTTCACAAAGTATCGCGAGACAATGGGAAATGCTCAGTGAGCAAGAGAAAAATGTATTTAGATAATAATTARAAGATAATTAAGGATAATTTAATATTTCAGATTTATAAGCAGCGATGTGAGAAAAGCCGAAAAACAAGCATCGCAAATGCCGTGGAAGAGAGAGCCAGGAAGTTGATGATGGCTGCTACACAGAAACTACAGTAATCCGCTATATTCTACAGTAATCTCTTTTAATTACTGTTTCCTGTCCTTATTGTAGATTGTGATTAAAATGAACTTTTTTTTCCAATTTCAAAGTTTGAGTGTCATTTTGAAAAATTGTTCAACAAACGAGTTTTGGGGCATAGGTTCTGGAAATTTTGAAAGTATCTTCTAACCAAAAAGTTTTAGAATTTTTTTCCCAACATTTTCTGAAAAGATCAACTTTGAAAAGTTCATATTTGTGTTTCATATTCCGGAAGCAGTGCTCATCTTTCCTAGTGTTCTAATAAACCTATTTTTGACTTATTCCAATTTTTCAGTGTTCGTTTTTCGAAAATGTTTTGTGTGCTCTGATTTTGAAGAGTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGGTCAAATTTCACAAAGTA</pcr_primer_p1>
		<pcr_primer_p2>TTACTGTAGAATATAGCGGATTACTG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TCGGTCAAATTTCACAAAGTATCGCGAGACAATGGGAAATGCTCAGTGAGCAAGAGAAAAATGTATTTAGATAATAATTAGAAGATAATTAAGGATAATTTAATATTTCAGATTTATAAGCAGCGATGTGAGAAAAGCCGAAAAACAAGCATCGCAAATGCCGTGGAAGAGAGAGCCAGGAAGTTGATGATGGCTGCTACACAGAAACTACAGTAATCCGCTATATTCTACAGTAA</canonical_amplicon>
		<polymorphic_amplicon>TCGGTCAAATTTCACAAAGTATCGCGAGACAATGGGAAATGCTCAGTGAGCAAGAGAAAAATGTATTTAGATAATAATTARAAGATAATTAAGGATAATTTAATATTTCAGATTTATAAGCAGCGATGTGAGAAAAGCCGAAAAACAAGCATCGCAAATGCCGTGGAAGAGAGAGCCAGGAAGTTGATGATGGCTGCTACACAGAAACTACAGTAATCCGCTATATTCTACAGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36833</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>2223</contig_pos>
        <strand></strand>
        <context>ctgaaaaaaa[A/T]gttcattatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGGAAAAATTTCAATTTTTTGGACCAAAAAATGACCGTCCTGAAAAAAA</left_flank>
        <right_flank>GTTCATTATTTTATAAAATTAAACATAAAATTCAGATCCTACATTAAAAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAAGTGATTAGCTTCTTTGAAAATGTGCTCTGGTAATCGGTTTTCAATCAGATTCTGAAAACGCGTATCTCCAGATTTGGATATTGTCTGATCATATTTGAGAGAAGCTAATTGAAAATCCAGCCGATACATCCGTAACTCAGCTTAAAATTGTTTAAGACGCGTTCTCTGTAGAACTTAACTTCAGGCCTATTACCCATTGTACAGAAAAATTCAAACTAGTTTTTTTCTGGTTGATTTTTAATATATTGCATTTTTATGGACTTCTAAGGTATGTGAGATATAGTTTGACTCGACTTGTCCCACACCTGCAAAAATATGGTCGTGGAGTGTCTAAAAAAAATTTTTTTTAAGTGAAATAATAATTAGGTCTTGATGTAGAACGTTTTACGGCACTATTTTGAACATTTTTTGTATTGGCACTATGCTAAAATTCTTCCATCTTACGAGGAAAAATTTCAATTTTTTGGACCAAAAAATGACCGTCCTGAAAAAAAAGTTCATTATTTTATAAAATTAAACATAAAATTCAGATCCTACATTAAAAAATACATTAGAAACTGTTTTGAAATTAAAGATAAATCTGAGCACCCTATGAGTTTTAGGCCAAAATGTGCCCGAAAATGAGGTTTCGCCATGTGGGGGAGTACATGGCAACAAAAATTCGACCAAAATCGACCCTCTCCGATTTGGTTCAAATTTCTACCAGATGTAGTATTTTTGACGGGTAGTATNNNNNNNNNNNTCATAGTAGGCTCAGGTTTATCTTTAATCTCAAAACAGTTGCTAATGTATTTTTTAATGTAGGATCTGAATTTTATGTTTAATTTCATAAAATAAGGGAAGTCTTTTTCAGGACGGTCATTTTTTGGTCCAAAAAATAGCTGTTTTGCAAAAAATTGAAATTTTTCCTAGTAAGATGGAAGAATTTTAGCTTAGTGCCAATACAAAAAATGTTCAAAATAGTGTCTACAGTGTGCGGCAAAAGTATGGTAACA</canonical>
            <polymorphic>GGAAAGTGATTAGCTTCTTTGAAAATGTGCTCTGGTAATCGGTTTTCAATCAGATTCTGAAAACGCGTATCTCCAGATTTGGATATTGTCTGATCATATTTGAGAGAAGCTAATTGAAAATCCAGCCGATACATCCGTAACTCAGCTTAAAATTGTTTAAGACGCGTTCTCTGTAGAACTTAACTTCAGGCCTATTACCCATTGTACAGAAAAATTCAAACTAGTTTTTTTCTGGTTGATTTTTAATATATTGCATTTTTATGGACTTCTAAGGTATGTGAGATATAGTTTGACTCGACTTGTCCCACACCTGCAAAAATATGGTCGTGGAGTGTCTAAAAAAAATTTTTTTTAAGTGAAATAATAATTAGGTCTTGATGTAGAACGTTTTACGGCACTATTTTGAACATTTTTTGTATTGGCACTATGCTAAAATTCTTCCATCTTACGAGGAAAAATTTCAATTTTTTGGACCAAAAAATGACCGTCCTGAAAAAAAWGTTCATTATTTTATAAAATTAAACATAAAATTCAGATCCTACATTAAAAAATACATTAGAAACTGTTTTGAAATTAAAGATAAATCTGAGCACCCTATGAGTTTTAGGCCAAAATGTGCCCGAAAATGAGGTTTCGCCATGTGGGGGAGTACATGGCAACAAAAATTCGACCAAAATCGACCCTCTCCGATTTGGTTCAAATTTCTACCAGATGTAGTATTTTTGACGGGTAGTATNNNNNNNNNNNTCATAGTAGGCTCAGGTTTATCTTTAATCTCAAAACAGTTGCTAATGTATTTTTTAATGTAGGATCTGAATTTTATGTTTAATTTCATAAAATAAGGGAAGTCTTTTTCAGGACGGTCATTTTTTGGTCCAAAAAATAGCTGTTTTGCAAAAAATTGAAATTTTTCCTAGTAAGATGGAAGAATTTTAGCTTAGTGCCAATACAAAAAATGTTCAAAATAGTGTCTACAGTGTGCGGCAAAAGTATGGTAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGTAACTCAGCTTAAAATTG</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGACTTCCCTTATTTTATGA</pcr_primer_p2>
		<pcr_amplicon_size>721</pcr_amplicon_size>
		<canonical_amplicon>CCGTAACTCAGCTTAAAATTGTTTAAGACGCGTTCTCTGTAGAACTTAACTTCAGGCCTATTACCCATTGTACAGAAAAATTCAAACTAGTTTTTTTCTGGTTGATTTTTAATATATTGCATTTTTATGGACTTCTAAGGTATGTGAGATATAGTTTGACTCGACTTGTCCCACACCTGCAAAAATATGGTCGTGGAGTGTCTAAAAAAAATTTTTTTTAAGTGAAATAATAATTAGGTCTTGATGTAGAACGTTTTACGGCACTATTTTGAACATTTTTTGTATTGGCACTATGCTAAAATTCTTCCATCTTACGAGGAAAAATTTCAATTTTTTGGACCAAAAAATGACCGTCCTGAAAAAAAAGTTCATTATTTTATAAAATTAAACATAAAATTCAGATCCTACATTAAAAAATACATTAGAAACTGTTTTGAAATTAAAGATAAATCTGAGCACCCTATGAGTTTTAGGCCAAAATGTGCCCGAAAATGAGGTTTCGCCATGTGGGGGAGTACATGGCAACAAAAATTCGACCAAAATCGACCCTCTCCGATTTGGTTCAAATTTCTACCAGATGTAGTATTTTTGACGGGTAGTATNNNNNNNNNNNTCATAGTAGGCTCAGGTTTATCTTTAATCTCAAAACAGTTGCTAATGTATTTTTTAATGTAGGATCTGAATTTTATGTTTAATTTCATAAAATAAGGGAAGTCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CCGTAACTCAGCTTAAAATTGTTTAAGACGCGTTCTCTGTAGAACTTAACTTCAGGCCTATTACCCATTGTACAGAAAAATTCAAACTAGTTTTTTTCTGGTTGATTTTTAATATATTGCATTTTTATGGACTTCTAAGGTATGTGAGATATAGTTTGACTCGACTTGTCCCACACCTGCAAAAATATGGTCGTGGAGTGTCTAAAAAAAATTTTTTTTAAGTGAAATAATAATTAGGTCTTGATGTAGAACGTTTTACGGCACTATTTTGAACATTTTTTGTATTGGCACTATGCTAAAATTCTTCCATCTTACGAGGAAAAATTTCAATTTTTTGGACCAAAAAATGACCGTCCTGAAAAAAAWGTTCATTATTTTATAAAATTAAACATAAAATTCAGATCCTACATTAAAAAATACATTAGAAACTGTTTTGAAATTAAAGATAAATCTGAGCACCCTATGAGTTTTAGGCCAAAATGTGCCCGAAAATGAGGTTTCGCCATGTGGGGGAGTACATGGCAACAAAAATTCGACCAAAATCGACCCTCTCCGATTTGGTTCAAATTTCTACCAGATGTAGTATTTTTGACGGGTAGTATNNNNNNNNNNNTCATAGTAGGCTCAGGTTTATCTTTAATCTCAAAACAGTTGCTAATGTATTTTTTAATGTAGGATCTGAATTTTATGTTTAATTTCATAAAATAAGGGAAGTCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36834</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>2258</contig_pos>
        <strand></strand>
        <context>ataaaattca[G/C]atcctacatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CCGTCCTGAAAAAAAAGTTCATTATTTTATAAAATTAAACATAAAATTCA</left_flank>
        <right_flank>ATCCTACATTAAAAAATACATTAGAAACTGTTTTGAAATTAAAGATAAAT</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATCGGTTTTCAATCAGATTCTGAAAACGCGTATCTCCAGATTTGGATATTGTCTGATCATATTTGAGAGAAGCTAATTGAAAATCCAGCCGATACATCCGTAACTCAGCTTAAAATTGTTTAAGACGCGTTCTCTGTAGAACTTAACTTCAGGCCTATTACCCATTGTACAGAAAAATTCAAACTAGTTTTTTTCTGGTTGATTTTTAATATATTGCATTTTTATGGACTTCTAAGGTATGTGAGATATAGTTTGACTCGACTTGTCCCACACCTGCAAAAATATGGTCGTGGAGTGTCTAAAAAAAATTTTTTTTAAGTGAAATAATAATTAGGTCTTGATGTAGAACGTTTTACGGCACTATTTTGAACATTTTTTGTATTGGCACTATGCTAAAATTCTTCCATCTTACGAGGAAAAATTTCAATTTTTTGGACCAAAAAATGACCGTCCTGAAAAAAAAGTTCATTATTTTATAAAATTAAACATAAAATTCAGATCCTACATTAAAAAATACATTAGAAACTGTTTTGAAATTAAAGATAAATCTGAGCACCCTATGAGTTTTAGGCCAAAATGTGCCCGAAAATGAGGTTTCGCCATGTGGGGGAGTACATGGCAACAAAAATTCGACCAAAATCGACCCTCTCCGATTTGGTTCAAATTTCTACCAGATGTAGTATTTTTGACGGGTAGTATNNNNNNNNNNNTCATAGTAGGCTCAGGTTTATCTTTAATCTCAAAACAGTTGCTAATGTATTTTTTAATGTAGGATCTGAATTTTATGTTTAATTTCATAAAATAAGGGAAGTCTTTTTCAGGACGGTCATTTTTTGGTCCAAAAAATAGCTGTTTTGCAAAAAATTGAAATTTTTCCTAGTAAGATGGAAGAATTTTAGCTTAGTGCCAATACAAAAAATGTTCAAAATAGTGTCTACAGTGTGCGGCAAAAGTATGGTAACACAATCAAAGTGATGTAACTTTCCCAAAATATCCCG</canonical>
            <polymorphic>TAATCGGTTTTCAATCAGATTCTGAAAACGCGTATCTCCAGATTTGGATATTGTCTGATCATATTTGAGAGAAGCTAATTGAAAATCCAGCCGATACATCCGTAACTCAGCTTAAAATTGTTTAAGACGCGTTCTCTGTAGAACTTAACTTCAGGCCTATTACCCATTGTACAGAAAAATTCAAACTAGTTTTTTTCTGGTTGATTTTTAATATATTGCATTTTTATGGACTTCTAAGGTATGTGAGATATAGTTTGACTCGACTTGTCCCACACCTGCAAAAATATGGTCGTGGAGTGTCTAAAAAAAATTTTTTTTAAGTGAAATAATAATTAGGTCTTGATGTAGAACGTTTTACGGCACTATTTTGAACATTTTTTGTATTGGCACTATGCTAAAATTCTTCCATCTTACGAGGAAAAATTTCAATTTTTTGGACCAAAAAATGACCGTCCTGAAAAAAAAGTTCATTATTTTATAAAATTAAACATAAAATTCASATCCTACATTAAAAAATACATTAGAAACTGTTTTGAAATTAAAGATAAATCTGAGCACCCTATGAGTTTTAGGCCAAAATGTGCCCGAAAATGAGGTTTCGCCATGTGGGGGAGTACATGGCAACAAAAATTCGACCAAAATCGACCCTCTCCGATTTGGTTCAAATTTCTACCAGATGTAGTATTTTTGACGGGTAGTATNNNNNNNNNNNTCATAGTAGGCTCAGGTTTATCTTTAATCTCAAAACAGTTGCTAATGTATTTTTTAATGTAGGATCTGAATTTTATGTTTAATTTCATAAAATAAGGGAAGTCTTTTTCAGGACGGTCATTTTTTGGTCCAAAAAATAGCTGTTTTGCAAAAAATTGAAATTTTTCCTAGTAAGATGGAAGAATTTTAGCTTAGTGCCAATACAAAAAATGTTCAAAATAGTGTCTACAGTGTGCGGCAAAAGTATGGTAACACAATCAAAGTGATGTAACTTTCCCAAAATATCCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>443 275 226 56</canonical_bands>
                <polymorphic_bands>718 226 56</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>499 275 226</canonical_bands>
                <polymorphic_bands>774 226</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>443 221 126 101 53 33 17 6</canonical_bands>
                <polymorphic_bands>496 221 126 101 33 17 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGTAACTCAGCTTAAAATTG</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGACTTCCCTTATTTTATGA</pcr_primer_p2>
		<pcr_amplicon_size>721</pcr_amplicon_size>
		<canonical_amplicon>CCGTAACTCAGCTTAAAATTGTTTAAGACGCGTTCTCTGTAGAACTTAACTTCAGGCCTATTACCCATTGTACAGAAAAATTCAAACTAGTTTTTTTCTGGTTGATTTTTAATATATTGCATTTTTATGGACTTCTAAGGTATGTGAGATATAGTTTGACTCGACTTGTCCCACACCTGCAAAAATATGGTCGTGGAGTGTCTAAAAAAAATTTTTTTTAAGTGAAATAATAATTAGGTCTTGATGTAGAACGTTTTACGGCACTATTTTGAACATTTTTTGTATTGGCACTATGCTAAAATTCTTCCATCTTACGAGGAAAAATTTCAATTTTTTGGACCAAAAAATGACCGTCCTGAAAAAAAAGTTCATTATTTTATAAAATTAAACATAAAATTCAGATCCTACATTAAAAAATACATTAGAAACTGTTTTGAAATTAAAGATAAATCTGAGCACCCTATGAGTTTTAGGCCAAAATGTGCCCGAAAATGAGGTTTCGCCATGTGGGGGAGTACATGGCAACAAAAATTCGACCAAAATCGACCCTCTCCGATTTGGTTCAAATTTCTACCAGATGTAGTATTTTTGACGGGTAGTATNNNNNNNNNNNTCATAGTAGGCTCAGGTTTATCTTTAATCTCAAAACAGTTGCTAATGTATTTTTTAATGTAGGATCTGAATTTTATGTTTAATTTCATAAAATAAGGGAAGTCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CCGTAACTCAGCTTAAAATTGTTTAAGACGCGTTCTCTGTAGAACTTAACTTCAGGCCTATTACCCATTGTACAGAAAAATTCAAACTAGTTTTTTTCTGGTTGATTTTTAATATATTGCATTTTTATGGACTTCTAAGGTATGTGAGATATAGTTTGACTCGACTTGTCCCACACCTGCAAAAATATGGTCGTGGAGTGTCTAAAAAAAATTTTTTTTAAGTGAAATAATAATTAGGTCTTGATGTAGAACGTTTTACGGCACTATTTTGAACATTTTTTGTATTGGCACTATGCTAAAATTCTTCCATCTTACGAGGAAAAATTTCAATTTTTTGGACCAAAAAATGACCGTCCTGAAAAAAAAGTTCATTATTTTATAAAATTAAACATAAAATTCASATCCTACATTAAAAAATACATTAGAAACTGTTTTGAAATTAAAGATAAATCTGAGCACCCTATGAGTTTTAGGCCAAAATGTGCCCGAAAATGAGGTTTCGCCATGTGGGGGAGTACATGGCAACAAAAATTCGACCAAAATCGACCCTCTCCGATTTGGTTCAAATTTCTACCAGATGTAGTATTTTTGACGGGTAGTATNNNNNNNNNNNTCATAGTAGGCTCAGGTTTATCTTTAATCTCAAAACAGTTGCTAATGTATTTTTTAATGTAGGATCTGAATTTTATGTTTAATTTCATAAAATAAGGGAAGTCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36835</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>2521</contig_pos>
        <strand>-</strand>
        <context>gctaatgtat[A/C]ttytaatgta</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCATAGTAGGCTCAGGTTTATCTTTAATCTCAAAACAGTTGCTAATGTAT</left_flank>
        <right_flank>TTTTAATGTAGGATCTGAATTTTATGTTTAATTTCATAAAATAAGGGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGTCCCACACCTGCAAAAATATGGTCGTGGAGTGTCTAAAAAAAATTTTTTTTAAGTGAAATAATAATTAGGTCTTGATGTAGAACGTTTTACGGCACTATTTTGAACATTTTTTGTATTGGCACTATGCTAAAATTCTTCCATCTTACGAGGAAAAATTTCAATTTTTTGGACCAAAAAATGACCGTCCTGAAAAAAAAGTTCATTATTTTATAAAATTAAACATAAAATTCAGATCCTACATTAAAAAATACATTAGAAACTGTTTTGAAATTAAAGATAAATCTGAGCACCCTATGAGTTTTAGGCCAAAATGTGCCCGAAAATGAGGTTTCGCCATGTGGGGGAGTACATGGCAACAAAAATTCGACCAAAATCGACCCTCTCCGATTTGGTTCAAATTTCTACCAGATGTAGTATTTTTGACGGGTAGTATNNNNNNNNNNNTCATAGTAGGCTCAGGTTTATCTTTAATCTCAAAACAGTTGCTAATGTATTTTTTAATGTAGGATCTGAATTTTATGTTTAATTTCATAAAATAAGGGAAGTCTTTTTCAGGACGGTCATTTTTTGGTCCAAAAAATAGCTGTTTTGCAAAAAATTGAAATTTTTCCTAGTAAGATGGAAGAATTTTAGCTTAGTGCCAATACAAAAAATGTTCAAAATAGTGTCTACAGTGTGCGGCAAAAGTATGGTAACACAATCAAAGTGATGTAACTTTCCCAAAATATCCCGTATCAACATGAAAATTGGACCATAGTTTACCGAATACTTTCTAATTATGAAGTTATAAAAATTGCTCGACGCGGTTGCCTTTGTTTCTCACAGCATCGATGAGTCTCTTCGGGAATGCCTCCACTGTGACACGTGGGTGCTTTGGGGATCGCTGGGCCGGTCCTGGGTTCAAACTTGTTTCCAATGACTACAAATTAGGTTCTGGACGTGCTTGGACCCTTGACTGAAATATTTCATATGCTGAATAGTACAACAGATTCATG</canonical>
            <polymorphic>CTTGTCCCACACCTGCAAAAATATGGTCGTGGAGTGTCTAAAAAAAATTTTTTTTAAGTGAAATAATAATTAGGTCTTGATGTAGAACGTTTTACGGCACTATTTTGAACATTTTTTGTATTGGCACTATGCTAAAATTCTTCCATCTTACGAGGAAAAATTTCAATTTTTTGGACCAAAAAATGACCGTCCTGAAAAAAAAGTTCATTATTTTATAAAATTAAACATAAAATTCAGATCCTACATTAAAAAATACATTAGAAACTGTTTTGAAATTAAAGATAAATCTGAGCACCCTATGAGTTTTAGGCCAAAATGTGCCCGAAAATGAGGTTTCGCCATGTGGGGGAGTACATGGCAACAAAAATTCGACCAAAATCGACCCTCTCCGATTTGGTTCAAATTTCTACCAGATGTAGTATTTTTGACGGGTAGTATNNNNNNNNNNNTCATAGTAGGCTCAGGTTTATCTTTAATCTCAAAACAGTTGCTAATGTATMTTTTAATGTAGGATCTGAATTTTATGTTTAATTTCATAAAATAAGGGAAGTCTTTTTCAGGACGGTCATTTTTTGGTCCAAAAAATAGCTGTTTTGCAAAAAATTGAAATTTTTCCTAGTAAGATGGAAGAATTTTAGCTTAGTGCCAATACAAAAAATGTTCAAAATAGTGTCTACAGTGTGCGGCAAAAGTATGGTAACACAATCAAAGTGATGTAACTTTCCCAAAATATCCCGTATCAACATGAAAATTGGACCATAGTTTACCGAATACTTTCTAATTATGAAGTTATAAAAATTGCTCGACGCGGTTGCCTTTGTTTCTCACAGCATCGATGAGTCTCTTCGGGAATGCCTCCACTGTGACACGTGGGTGCTTTGGGGATCGCTGGGCCGGTCCTGGGTTCAAACTTGTTTCCAATGACTACAAATTAGGTTCTGGACGTGCTTGGACCCTTGACTGAAATATTTCATATGCTGAATAGTACAACAGATTCATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGTAACTCAGCTTAAAATTG</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGACTTCCCTTATTTTATGA</pcr_primer_p2>
		<pcr_amplicon_size>721</pcr_amplicon_size>
		<canonical_amplicon>TTTTTTAATGTAGGATCTGAATTTTATGTTTAATTTCATAAAATAAGGGAAGTCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>TMTTTTAATGTAGGATCTGAATTTTATGTTTAATTTCATAAAATAAGGGAAGTCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36836</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>2524</contig_pos>
        <strand>-</strand>
        <context>aatgtatmtt[C/T]taatgtagga</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGTAGGCTCAGGTTTATCTTTAATCTCAAAACAGTTGCTAATGTATTTT</left_flank>
        <right_flank>TAATGTAGGATCTGAATTTTATGTTTAATTTCATAAAATAAGGGAAGTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCCCACACCTGCAAAAATATGGTCGTGGAGTGTCTAAAAAAAATTTTTTTTAAGTGAAATAATAATTAGGTCTTGATGTAGAACGTTTTACGGCACTATTTTGAACATTTTTTGTATTGGCACTATGCTAAAATTCTTCCATCTTACGAGGAAAAATTTCAATTTTTTGGACCAAAAAATGACCGTCCTGAAAAAAAAGTTCATTATTTTATAAAATTAAACATAAAATTCAGATCCTACATTAAAAAATACATTAGAAACTGTTTTGAAATTAAAGATAAATCTGAGCACCCTATGAGTTTTAGGCCAAAATGTGCCCGAAAATGAGGTTTCGCCATGTGGGGGAGTACATGGCAACAAAAATTCGACCAAAATCGACCCTCTCCGATTTGGTTCAAATTTCTACCAGATGTAGTATTTTTGACGGGTAGTATNNNNNNNNNNNTCATAGTAGGCTCAGGTTTATCTTTAATCTCAAAACAGTTGCTAATGTATTTTTTAATGTAGGATCTGAATTTTATGTTTAATTTCATAAAATAAGGGAAGTCTTTTTCAGGACGGTCATTTTTTGGTCCAAAAAATAGCTGTTTTGCAAAAAATTGAAATTTTTCCTAGTAAGATGGAAGAATTTTAGCTTAGTGCCAATACAAAAAATGTTCAAAATAGTGTCTACAGTGTGCGGCAAAAGTATGGTAACACAATCAAAGTGATGTAACTTTCCCAAAATATCCCGTATCAACATGAAAATTGGACCATAGTTTACCGAATACTTTCTAATTATGAAGTTATAAAAATTGCTCGACGCGGTTGCCTTTGTTTCTCACAGCATCGATGAGTCTCTTCGGGAATGCCTCCACTGTGACACGTGGGTGCTTTGGGGATCGCTGGGCCGGTCCTGGGTTCAAACTTGTTTCCAATGACTACAAATTAGGTTCTGGACGTGCTTGGACCCTTGACTGAAATATTTCATATGCTGAATAGTACAACAGATTCATGTCT</canonical>
            <polymorphic>GTCCCACACCTGCAAAAATATGGTCGTGGAGTGTCTAAAAAAAATTTTTTTTAAGTGAAATAATAATTAGGTCTTGATGTAGAACGTTTTACGGCACTATTTTGAACATTTTTTGTATTGGCACTATGCTAAAATTCTTCCATCTTACGAGGAAAAATTTCAATTTTTTGGACCAAAAAATGACCGTCCTGAAAAAAAAGTTCATTATTTTATAAAATTAAACATAAAATTCAGATCCTACATTAAAAAATACATTAGAAACTGTTTTGAAATTAAAGATAAATCTGAGCACCCTATGAGTTTTAGGCCAAAATGTGCCCGAAAATGAGGTTTCGCCATGTGGGGGAGTACATGGCAACAAAAATTCGACCAAAATCGACCCTCTCCGATTTGGTTCAAATTTCTACCAGATGTAGTATTTTTGACGGGTAGTATNNNNNNNNNNNTCATAGTAGGCTCAGGTTTATCTTTAATCTCAAAACAGTTGCTAATGTATTTTYTAATGTAGGATCTGAATTTTATGTTTAATTTCATAAAATAAGGGAAGTCTTTTTCAGGACGGTCATTTTTTGGTCCAAAAAATAGCTGTTTTGCAAAAAATTGAAATTTTTCCTAGTAAGATGGAAGAATTTTAGCTTAGTGCCAATACAAAAAATGTTCAAAATAGTGTCTACAGTGTGCGGCAAAAGTATGGTAACACAATCAAAGTGATGTAACTTTCCCAAAATATCCCGTATCAACATGAAAATTGGACCATAGTTTACCGAATACTTTCTAATTATGAAGTTATAAAAATTGCTCGACGCGGTTGCCTTTGTTTCTCACAGCATCGATGAGTCTCTTCGGGAATGCCTCCACTGTGACACGTGGGTGCTTTGGGGATCGCTGGGCCGGTCCTGGGTTCAAACTTGTTTCCAATGACTACAAATTAGGTTCTGGACGTGCTTGGACCCTTGACTGAAATATTTCATATGCTGAATAGTACAACAGATTCATGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>475 197 167 51 30 30 25 25</canonical_bands>
                <polymorphic_bands>475 197 167 55 51 30 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGTAACTCAGCTTAAAATTG</pcr_primer_p1>
		<pcr_primer_p2>CTGAAAAAGACTTCCCTTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>724</pcr_amplicon_size>
		<canonical_amplicon>TTTAATGTAGGATCTGAATTTTATGTTTAATTTCATAAAATAAGGGAAGTCTTTTTCAG</canonical_amplicon>
		<polymorphic_amplicon>TYTAATGTAGGATCTGAATTTTATGTTTAATTTCATAAAATAAGGGAAGTCTTTTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36837</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>3301</contig_pos>
        <strand>-</strand>
        <context>AATCTCTTTT[C/G]GTCATGTTAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAGGTTGTTGCACCAAAAACCATGACGTTCTGATGATATGAATCTCTTTT</left_flank>
        <right_flank>GTCATGTTACTATTCTTATTAAATAGCTCAGATCTCGGGGAAGAAACTAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATGAAGTTATAAAAATTGCTCGACGCGGTTGCCTTTGTTTCTCACAGCATCGATGAGTCTCTTCGGGAATGCCTCCACTGTGACACGTGGGTGCTTTGGGGATCGCTGGGCCGGTCCTGGGTTCAAACTTGTTTCCAATGACTACAAATTAGGTTCTGGACGTGCTTGGACCCTTGACTGAAATATTTCATATGCTGAATAGTACAACAGATTCATGTCTGACGACGAGGGTGACCATGCGCAAGTCATACTAAATATTGAAAAATTGGCGTGCATCATGGCTGAATAATTTTTGTCTTGTGAGCGGGAGCAGAAGCCCGATGAATAGTCCAAACATGGTTTTCAAAATAGGATTTGGTCCATGGAAGAAAATACCCTTTGAAAATTTCTTCATATTAGTACTTTTTGTTGATTTTCACCCCAAAATCTACAAAAATTAGAACTTGGAGGTTGTTGCACCAAAAACCATGACGTTCTGATGATATGAATCTCTTTTCGTCATGTTACTATTCTTATTAAATAGCTCAGATCTCGGGGAAGAAACTAGATAGTTTTTCGATGAGAATTCGACTTCCACCGTCAAGAGTTTCTCATCGACAAACATCATCCTCATGTGTTCATTTTGGCGCGTGCCAGCAAATGTCAATTTGCACTTCTGGACGCCAACCAGATTGTTGTTTCCCGGCAGAATTCCAGTCTTTCGAACACGATATGGGGTCAGTCCAAGCTACTTTTATCGTTTTTACTGAGTGGCTGACTGCTCATTCGGAGCTCCAGGCTCATTTTTTCTTTCTTCGATGCGGATTTCGACAAACTTGTTCTTGGACGATCTTGCTTTTTTCAGAATGATCAAAGTTTGAGATATTATGTTTTTTGAACAGTTCTTTATTGTATTTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTGGCGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTG</canonical>
            <polymorphic>ATTATGAAGTTATAAAAATTGCTCGACGCGGTTGCCTTTGTTTCTCACAGCATCGATGAGTCTCTTCGGGAATGCCTCCACTGTGACACGTGGGTGCTTTGGGGATCGCTGGGCCGGTCCTGGGTTCAAACTTGTTTCCAATGACTACAAATTAGGTTCTGGACGTGCTTGGACCCTTGACTGAAATATTTCATATGCTGAATAGTACAACAGATTCATGTCTGACGACGAGGGTGACCATGCGCAAGTCATACTAAATATTGAAAAATTGGCGTGCATCATGGCTGAATAATTTTTGTCTTGTGAGCGGGAGCAGAAGCCCGATGAATAGTCCAAACATGGTTTTCAAAATAGGATTTGGTCCATGGAAGAAAATACCCTTTGAAAATTTCTTCATATTAGTACTTTTTGTTGATTTTCACCCCAAAATCTACAAAAATTAGAACTTGGAGGTTGTTGCACCAAAAACCATGACGTTCTGATGATATGAATCTCTTTTSGTCATGTTACTATTCTTATTAAATAGCTCAGATCTCGGGGAAGAAACTAGATAGTTTTTCGATGAGAATTCGACTTCCACCGTCAAGAGTTTCTCATCGACAAACATCATCCTCATGTGTTCATTTTGGCGCGTGCCAGCAAATGTCAATTTGCACTTCTGGACGCCAACCAGATTGTTGTTTCCCGGCAGAATTCCAGTCTTTCGAACACGATATGGGGTCAGTCCAAGCTACTTTTATCGTTTTTACTGAGTGGCTGACTGCTCATTCGGAGCTCCAGGCTCATTTTTTCTTTCTTCGATGCGGATTTCGACAAACTTGTTCTTGGACGATCTTGCTTTTTTCAGAATGATCAAAGTTTGAGATATTATGTTTTTTGAACAGTTCTTTATTGTATTTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTGGCGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCTTTGAAAATTTCTTCATATT</pcr_primer_p1>
		<pcr_primer_p2>AAAATGAACACATGAGGATGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCCTTTGAAAATTTCTTCATATTAGTACTTTTTGTTGATTTTCACCCCAAAATCTACAAAAATTAGAACTTGGAGGTTGTTGCACCAAAAACCATGACGTTCTGATGATATGAATCTCTTTTCGTCATGTTACTATTCTTATTAAATAGCTCAGATCTCGGGGAAGAAACTAGATAGTTTTTCGATGAGAATTCGACTTCCACCGTCAAGAGTTTCTCATCGACAAACATCATCCTCATGTGTTCATTTT</canonical_amplicon>
		<polymorphic_amplicon>CCCTTTGAAAATTTCTTCATATTAGTACTTTTTGTTGATTTTCACCCCAAAATCTACAAAAATTAGAACTTGGAGGTTGTTGCACCAAAAACCATGACGTTCTGATGATATGAATCTCTTTTSGTCATGTTACTATTCTTATTAAATAGCTCAGATCTCGGGGAAGAAACTAGATAGTTTTTCGATGAGAATTCGACTTCCACCGTCAAGAGTTTCTCATCGACAAACATCATCCTCATGTGTTCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36838</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>3558</contig_pos>
        <strand>-</strand>
        <context>TACTGAGTGG[C/G]TGACTGCTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AACACGATATGGGGTCAGTCCAAGCTACTTTTATCGTTTTTACTGAGTGG</left_flank>
        <right_flank>TGACTGCTCATTCGGAGCTCCAGGCTCATTTTTTCTTTCTTCGATGCGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATTGAAAAATTGGCGTGCATCATGGCTGAATAATTTTTGTCTTGTGAGCGGGAGCAGAAGCCCGATGAATAGTCCAAACATGGTTTTCAAAATAGGATTTGGTCCATGGAAGAAAATACCCTTTGAAAATTTCTTCATATTAGTACTTTTTGTTGATTTTCACCCCAAAATCTACAAAAATTAGAACTTGGAGGTTGTTGCACCAAAAACCATGACGTTCTGATGATATGAATCTCTTTTCGTCATGTTACTATTCTTATTAAATAGCTCAGATCTCGGGGAAGAAACTAGATAGTTTTTCGATGAGAATTCGACTTCCACCGTCAAGAGTTTCTCATCGACAAACATCATCCTCATGTGTTCATTTTGGCGCGTGCCAGCAAATGTCAATTTGCACTTCTGGACGCCAACCAGATTGTTGTTTCCCGGCAGAATTCCAGTCTTTCGAACACGATATGGGGTCAGTCCAAGCTACTTTTATCGTTTTTACTGAGTGGCTGACTGCTCATTCGGAGCTCCAGGCTCATTTTTTCTTTCTTCGATGCGGATTTCGACAAACTTGTTCTTGGACGATCTTGCTTTTTTCAGAATGATCAAAGTTTGAGATATTATGTTTTTTGAACAGTTCTTTATTGTATTTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTGGCGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGACCGCTTTCTCTTTGCCCGTGTAACTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCGTCCCACACGTTCAACTCCTCGAGAGGCATATTTAAACGAAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAACTAATCAAACCATTCCATGGTTATCCACACGGTTGTTCGTGAGATTCCAAGAGCTTTTCAGATGCTACCTGTGCCCACCCCTCTCT</canonical>
            <polymorphic>ATATTGAAAAATTGGCGTGCATCATGGCTGAATAATTTTTGTCTTGTGAGCGGGAGCAGAAGCCCGATGAATAGTCCAAACATGGTTTTCAAAATAGGATTTGGTCCATGGAAGAAAATACCCTTTGAAAATTTCTTCATATTAGTACTTTTTGTTGATTTTCACCCCAAAATCTACAAAAATTAGAACTTGGAGGTTGTTGCACCAAAAACCATGACGTTCTGATGATATGAATCTCTTTTCGTCATGTTACTATTCTTATTAAATAGCTCAGATCTCGGGGAAGAAACTAGATAGTTTTTCGATGAGAATTCGACTTCCACCGTCAAGAGTTTCTCATCGACAAACATCATCCTCATGTGTTCATTTTGGCGCGTGCCAGCAAATGTCAATTTGCACTTCTGGACGCCAACCAGATTGTTGTTTCCCGGCAGAATTCCAGTCTTTCGAACACGATATGGGGTCAGTCCAAGCTACTTTTATCGTTTTTACTGAGTGGSTGACTGCTCATTCGGAGCTCCAGGCTCATTTTTTCTTTCTTCGATGCGGATTTCGACAAACTTGTTCTTGGACGATCTTGCTTTTTTCAGAATGATCAAAGTTTGAGATATTATGTTTTTTGAACAGTTCTTTATTGTATTTAAAGGTGGGGGGACAGGAGATTTTACGGGGGATTTTTGGGGCCAGAGTATGCATTCTACCGTGGCGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGACCGCTTTCTCTTTGCCCGTGTAACTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCGTCCCACACGTTCAACTCCTCGAGAGGCATATTTAAACGAAATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAACTAATCAAACCATTCCATGGTTATCCACACGGTTGTTCGTGAGATTCCAAGAGCTTTTCAGATGCTACCTGTGCCCACCCCTCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>227 207 204 159 57 35 33 27 26 18 7</canonical_bands>
                <polymorphic_bands>227 207 204 159 57 44 35 33 27 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCATCGACAAACATCAT</pcr_primer_p1>
		<pcr_primer_p2>AGATCGTCCAAGAACAAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCATCGACAAACATCATCCTCATGTGTTCATTTTGGCGCGTGCCAGCAAATGTCAATTTGCACTTCTGGACGCCAACCAGATTGTTGTTTCCCGGCAGAATTCCAGTCTTTCGAACACGATATGGGGTCAGTCCAAGCTACTTTTATCGTTTTTACTGAGTGGCTGACTGCTCATTCGGAGCTCCAGGCTCATTTTTTCTTTCTTCGATGCGGATTTCGACAAACTTGTTCTTGGACGATCT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCATCGACAAACATCATCCTCATGTGTTCATTTTGGCGCGTGCCAGCAAATGTCAATTTGCACTTCTGGACGCCAACCAGATTGTTGTTTCCCGGCAGAATTCCAGTCTTTCGAACACGATATGGGGTCAGTCCAAGCTACTTTTATCGTTTTTACTGAGTGGSTGACTGCTCATTCGGAGCTCCAGGCTCATTTTTTCTTTCTTCGATGCGGATTTCGACAAACTTGTTCTTGGACGATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36839</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>18323</contig_pos>
        <strand></strand>
        <context>TTCCGAGACT[A/T]CGGATTAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTCATCTTTTTAGCAAAATTGTCACTTTACACGGCGTTTTTCCGAGACT</left_flank>
        <right_flank>CGGATTAAAAACAACTTTTCAATCATTTTAATGCAGTACAAGTTTTATCG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAATGAGCATCTAAAAGAATTTCTTCTGCTGTTACTCTTCGACTCTATTTTTCGTTTTTTTTTTTGGAATTTAAATTGAAATGGCAAAAACGGAAGAATATTTTGAAGTAGGGCTCCGACCAAAAAGTTTTATTGCACTAAAATGTTTTAAAAGTTATGTACTTTCCTAATAATATTGCAAAAATCCAAAAAGAGCCTTTAAAGGGGACGATTTTTCTTAAAAGGGTGGCGAATAGGGGCGAGGAATTGACTTCCCGCACAGTGAGAAACCAAGGCCACGGCGGCGAGCCGTCTTTCTTTTAAGTGACAGATTCTTGTCTTTTAAACGTTTTACATGTTGGAGATAAAAGACGAAAAATCCGGGAAAATTGCTATGCAAAAAGGCGGCGTCCCTCCGCCGTGGCCTAGGTTTCTCACTGCGCGGGAAATCAAATTATCGGCCCAATTGGTCATCTTTTTAGCAAAATTGTCACTTTACACGGCGTTTTTCCGAGACTACGGATTAAAAACAACTTTTCAATCATTTTAATGCAGTACAAGTTTTATCGGAGTCCCTTTTGAAGCAAGTTCATCAATTTTTACAAATGCCATCCAGAGACTCTTGTCCAAAACAGAATCTGAGATTTAAATACGAAGACAGACATATCATAATATCCCACTCATAAATAGGCACTGGAAGAGAGAAGCATATCCGTCCCTTCTCATATTTCATTATCACATCTGTACGTCTACTTCAGAAGACGTTCTTCTTCTTCTAAACCTCCAAGGAGATGACCAACGTCTTCCAAAAGGAATTCGTTTCATTCTCTTTGTCTCAATTTAGGCGGTGAATTGGCTCGTAAAAGAAAAGATAGTGTAAATTTACGGTTGCGCGCGAGAAGAGATAGGCACAATTAGTTAAATTGTCAAACATTCTTCGTCTTCAAACGGAAAAAGCAGAATAGATAAATGAAAGGAAAAGAACTAATAAAGTTCCGAACGGATCGAAGAAGGGTGTG</canonical>
            <polymorphic>TGGAATGAGCATCTAAAAGAATTTCTTCTGCTGTTACTCTTCGACTCTATTTTTCGTTTTTTTTTTTGGAATTTAAATTGAAATGGCAAAAACGGAAGAATATTTTGAAGTAGGGCTCCGACCAAAAAGTTTTATTGCACTAAAATGTTTTAAAAGTTATGTACTTTCCTAATAATATTGCAAAAATCCAAAAAGAGCCTTTAAAGGGGACGATTTTTCTTAAAAGGGTGGCGAATAGGGGCGAGGAATTGACTTCCCGCACAGTGAGAAACCAAGGCCACGGCGGCGAGCCGTCTTTCTTTTAAGTGACAGATTCTTGTCTTTTAAACGTTTTACATGTTGGAGATAAAAGACGAAAAATCCGGGAAAATTGCTATGCAAAAAGGCGGCGTCCCTCCGCCGTGGCCTAGGTTTCTCACTGCGCGGGAAATCAAATTATCGGCCCAATTGGTCATCTTTTTAGCAAAATTGTCACTTTACACGGCGTTTTTCCGAGACTWCGGATTAAAAACAACTTTTCAATCATTTTAATGCAGTACAAGTTTTATCGGAGTCCCTTTTGAAGCAAGTTCATCAATTTTTACAAATGCCATCCAGAGACTCTTGTCCAAAACAGAATCTGAGATTTAAATACGAAGACAGACATATCATAATATCCCACTCATAAATAGGCACTGGAAGAGAGAAGCATATCCGTCCCTTCTCATATTTCATTATCACATCTGTACGTCTACTTCAGAAGACGTTCTTCTTCTTCTAAACCTCCAAGGAGATGACCAACGTCTTCCAAAAGGAATTCGTTTCATTCTCTTTGTCTCAATTTAGGCGGTGAATTGGCTCGTAAAAGAAAAGATAGTGTAAATTTACGGTTGCGCGCGAGAAGAGATAGGCACAATTAGTTAAATTGTCAAACATTCTTCGTCTTCAAACGGAAAAAGCAGAATAGATAAATGAAAGGAAAAGAACTAATAAAGTTCCGAACGGATCGAAGAAGGGTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGTTTTACATGTTGGAGATAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGATGAACTTGCTTCAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGTTTTACATGTTGGAGATAAAAGACGAAAAATCCGGGAAAATTGCTATGCAAAAAGGCGGCGTCCCTCCGCCGTGGCCTAGGTTTCTCACTGCGCGGGAAATCAAATTATCGGCCCAATTGGTCATCTTTTTAGCAAAATTGTCACTTTACACGGCGTTTTTCCGAGACTACGGATTAAAAACAACTTTTCAATCATTTTAATGCAGTACAAGTTTTATCGGAGTCCCTTTTGAAGCAAGTTCATCAA</canonical_amplicon>
		<polymorphic_amplicon>ACGTTTTACATGTTGGAGATAAAAGACGAAAAATCCGGGAAAATTGCTATGCAAAAAGGCGGCGTCCCTCCGCCGTGGCCTAGGTTTCTCACTGCGCGGGAAATCAAATTATCGGCCCAATTGGTCATCTTTTTAGCAAAATTGTCACTTTACACGGCGTTTTTCCGAGACTWCGGATTAAAAACAACTTTTCAATCATTTTAATGCAGTACAAGTTTTATCGGAGTCCCTTTTGAAGCAAGTTCATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36840</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>66329</contig_pos>
        <strand></strand>
        <context>tgtcaactaa[T/C]aaaaactyct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGCTCATGCATCTCAATTCCTATGCAAGATATCAAAAATGTGTCAACTAA</left_flank>
        <right_flank>AAAAACTTCTGTTATTATGATGAAGATTTTATCAGTGGACAACTTTGTTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGATTTCAACCAATGGAACATCACTGAGGCAGACGAAAAAGGATTCAAACTTTCGCAATTGATCAAAAAGTTGTTAAAACAAGGAACCGCAAAAGCTGTTCCATTTGAAGTGAGCAATATTTTTTGGTACGAGATTAACTATATTCTCTTTAGCAAAAAGATGTCCACATACTCCTAAACCGTGTCTTCAAGTACTACACATGTCCACCGGATAAAAAAGGAAGTAGTACTGGTCCACCACCTCCTCCGCCTGGATCCGCATCTGCTACGACATCCGTGACACCTCCGAAATCACCGGCTCAACCGCTTCTCGAACTACAAGCACCTATCAATATTTGTGGAGACACTCATGGCCAGTATAATGATTTACTTCGTATTTTCAATGTAAGATTTTTTCTTCAAACCGTAAAACATGTATTAGAAGGATCCCCACACTGTCAAGTTTGAGCTCATGCATCTCAATTCCTATGCAAGATATCAAAAATGTGTCAACTAATAAAAACTTCTGTTATTATGATGAAGATTTTATCAGTGGACAACTTTGTTATATCTCCGACAGAAACCGAGAAAAAACGGCTCAAAGTTTAAGGATAGGGGAGCGCTTCTATTACAGTTTTTATTGAGTTTTCAGTCTTGTGGAGCACCAACAAAAAATCAATATCTGTTCCTGGGCGACTATATTGATCGAGGTCGTCATTCGTTGGAAGTCATCATTTTGCTTTTTGCTCTCAAGTTGGCAGTACCAAAGAAAGTTCATTTATTAAGAGGAAACCACGAATTGAAAGCTATCAACAAGTTAGTTTGCAATGGTTTTAAGAATATCTGCACAATTCTTTTTTAGAAACTACGGATTCTACGGAGAACTTAAAACAAGATTCCGTTGTGGTGCTGGAACCAATACTGGTGTTGCGGAGAGACTCTATGCACATTTCAATCAAGTATTTTCCTATATGCCATTGGCTGCAATTGTCTCAAAACGAATTCTGTGTATGCATGG</canonical>
            <polymorphic>TTCTGATTTCAACCAATGGAACATCACTGAGGCAGACGAAAAAGGATTCAAACTTTCGCAATTGATCAAAAAGTTGTTAAAACAAGGAACCGCAAAAGCTGTTCCATTTGAAGTGAGCAATATTTTTTGGTACGAGATTAACTATATTCTCTTTAGCAAAAAGATGTCCACATACTCCTAAACCGTGTCTTCAAGTACTACACATGTCCACCGGATAAAAAAGGAAGTAGTACTGGTCCACCACCTCCTCCGCCTGGATCCGCATCTGCTACGACATCCGTGACACCTCCGAAATCACCGGCTCAACCGCTTCTCGAACTACAAGCACCTATCAATATTTGTGGAGACACTCATGGCCAGTATAATGATTTACTTCGTATTTTCAATGTAAGATTTTTTCTTCAAACCGTAAAACATGTATTAGAAGGATCCCCACACTGTCAAGTTTGAGCTCATGCATCTCAATTCCTATGCAAGATATCAAAAATGTGTCAACTAAYAAAAACTTCTGTTATTATGATGAAGATTTTATCAGTGGACAACTTTGTTATATCTCCGACAGAAACCGAGAAAAAACGGCTCAAAGTTTAAGGATAGGGGAGCGCTTCTATTACAGTTTTTATTGAGTTTTCAGTCTTGTGGAGCACCAACAAAAAATCAATATCTGTTCCTGGGCGACTATATTGATCGAGGTCGTCATTCGTTGGAAGTCATCATTTTGCTTTTTGCTCTCAAGTTGGCAGTACCAAAGAAAGTTCATTTATTAAGAGGAAACCACGAATTGAAAGCTATCAACAAGTTAGTTTGCAATGGTTTTAAGAATATCTGCACAATTCTTTTTTAGAAACTACGGATTCTACGGAGAACTTAAAACAAGATTCCGTTGTGGTGCTGGAACCAATACTGGTGTTGCGGAGAGACTCTATGCACATTTCAATCAAGTATTTTCCTATATGCCATTGGCTGCAATTGTCTCAAAACGAATTCTGTGTATGCATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGTATTTTCAATGTAAGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCCACAAGACTGAAAACTCAA</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>TCGTATTTTCAATGTAAGATTTTTTCTTCAAACCGTAAAACATGTATTAGAAGGATCCCCACACTGTCAAGTTTGAGCTCATGCATCTCAATTCCTATGCAAGATATCAAAAATGTGTCAACTAATAAAAACTTCTGTTATTATGATGAAGATTTTATCAGTGGACAACTTTGTTATATCTCCGACAGAAACCGAGAAAAAACGGCTCAAAGTTTAAGGATAGGGGAGCGCTTCTATTACAGTTTTTATTGAGTTTTCAGTCTTGTGGA</canonical_amplicon>
		<polymorphic_amplicon>TCGTATTTTCAATGTAAGATTTTTTCTTCAAACCGTAAAACATGTATTAGAAGGATCCCCACACTGTCAAGTTTGAGCTCATGCATCTCAATTCCTATGCAAGATATCAAAAATGTGTCAACTAAYAAAAACTTCTGTTATTATGATGAAGATTTTATCAGTGGACAACTTTGTTATATCTCCGACAGAAACCGAGAAAAAACGGCTCAAAGTTTAAGGATAGGGGAGCGCTTCTATTACAGTTTTTATTGAGTTTTCAGTCTTGTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36841</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>66337</contig_pos>
        <strand></strand>
        <context>aayaaaaact[T/C]ctgttattat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CATCTCAATTCCTATGCAAGATATCAAAAATGTGTCAACTAATAAAAACT</left_flank>
        <right_flank>CTGTTATTATGATGAAGATTTTATCAGTGGACAACTTTGTTATATCTCCG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAACCAATGGAACATCACTGAGGCAGACGAAAAAGGATTCAAACTTTCGCAATTGATCAAAAAGTTGTTAAAACAAGGAACCGCAAAAGCTGTTCCATTTGAAGTGAGCAATATTTTTTGGTACGAGATTAACTATATTCTCTTTAGCAAAAAGATGTCCACATACTCCTAAACCGTGTCTTCAAGTACTACACATGTCCACCGGATAAAAAAGGAAGTAGTACTGGTCCACCACCTCCTCCGCCTGGATCCGCATCTGCTACGACATCCGTGACACCTCCGAAATCACCGGCTCAACCGCTTCTCGAACTACAAGCACCTATCAATATTTGTGGAGACACTCATGGCCAGTATAATGATTTACTTCGTATTTTCAATGTAAGATTTTTTCTTCAAACCGTAAAACATGTATTAGAAGGATCCCCACACTGTCAAGTTTGAGCTCATGCATCTCAATTCCTATGCAAGATATCAAAAATGTGTCAACTAATAAAAACTTCTGTTATTATGATGAAGATTTTATCAGTGGACAACTTTGTTATATCTCCGACAGAAACCGAGAAAAAACGGCTCAAAGTTTAAGGATAGGGGAGCGCTTCTATTACAGTTTTTATTGAGTTTTCAGTCTTGTGGAGCACCAACAAAAAATCAATATCTGTTCCTGGGCGACTATATTGATCGAGGTCGTCATTCGTTGGAAGTCATCATTTTGCTTTTTGCTCTCAAGTTGGCAGTACCAAAGAAAGTTCATTTATTAAGAGGAAACCACGAATTGAAAGCTATCAACAAGTTAGTTTGCAATGGTTTTAAGAATATCTGCACAATTCTTTTTTAGAAACTACGGATTCTACGGAGAACTTAAAACAAGATTCCGTTGTGGTGCTGGAACCAATACTGGTGTTGCGGAGAGACTCTATGCACATTTCAATCAAGTATTTTCCTATATGCCATTGGCTGCAATTGTCTCAAAACGAATTCTGTGTATGCATGGAGGTATAC</canonical>
            <polymorphic>TCAACCAATGGAACATCACTGAGGCAGACGAAAAAGGATTCAAACTTTCGCAATTGATCAAAAAGTTGTTAAAACAAGGAACCGCAAAAGCTGTTCCATTTGAAGTGAGCAATATTTTTTGGTACGAGATTAACTATATTCTCTTTAGCAAAAAGATGTCCACATACTCCTAAACCGTGTCTTCAAGTACTACACATGTCCACCGGATAAAAAAGGAAGTAGTACTGGTCCACCACCTCCTCCGCCTGGATCCGCATCTGCTACGACATCCGTGACACCTCCGAAATCACCGGCTCAACCGCTTCTCGAACTACAAGCACCTATCAATATTTGTGGAGACACTCATGGCCAGTATAATGATTTACTTCGTATTTTCAATGTAAGATTTTTTCTTCAAACCGTAAAACATGTATTAGAAGGATCCCCACACTGTCAAGTTTGAGCTCATGCATCTCAATTCCTATGCAAGATATCAAAAATGTGTCAACTAATAAAAACTYCTGTTATTATGATGAAGATTTTATCAGTGGACAACTTTGTTATATCTCCGACAGAAACCGAGAAAAAACGGCTCAAAGTTTAAGGATAGGGGAGCGCTTCTATTACAGTTTTTATTGAGTTTTCAGTCTTGTGGAGCACCAACAAAAAATCAATATCTGTTCCTGGGCGACTATATTGATCGAGGTCGTCATTCGTTGGAAGTCATCATTTTGCTTTTTGCTCTCAAGTTGGCAGTACCAAAGAAAGTTCATTTATTAAGAGGAAACCACGAATTGAAAGCTATCAACAAGTTAGTTTGCAATGGTTTTAAGAATATCTGCACAATTCTTTTTTAGAAACTACGGATTCTACGGAGAACTTAAAACAAGATTCCGTTGTGGTGCTGGAACCAATACTGGTGTTGCGGAGAGACTCTATGCACATTTCAATCAAGTATTTTCCTATATGCCATTGGCTGCAATTGTCTCAAAACGAATTCTGTGTATGCATGGAGGTATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGTATTTTCAATGTAAGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCCACAAGACTGAAAACTCAA</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>TCGTATTTTCAATGTAAGATTTTTTCTTCAAACCGTAAAACATGTATTAGAAGGATCCCCACACTGTCAAGTTTGAGCTCATGCATCTCAATTCCTATGCAAGATATCAAAAATGTGTCAACTAATAAAAACTTCTGTTATTATGATGAAGATTTTATCAGTGGACAACTTTGTTATATCTCCGACAGAAACCGAGAAAAAACGGCTCAAAGTTTAAGGATAGGGGAGCGCTTCTATTACAGTTTTTATTGAGTTTTCAGTCTTGTGGA</canonical_amplicon>
		<polymorphic_amplicon>TCGTATTTTCAATGTAAGATTTTTTCTTCAAACCGTAAAACATGTATTAGAAGGATCCCCACACTGTCAAGTTTGAGCTCATGCATCTCAATTCCTATGCAAGATATCAAAAATGTGTCAACTAATAAAAACTYCTGTTATTATGATGAAGATTTTATCAGTGGACAACTTTGTTATATCTCCGACAGAAACCGAGAAAAAACGGCTCAAAGTTTAAGGATAGGGGAGCGCTTCTATTACAGTTTTTATTGAGTTTTCAGTCTTGTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36842</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>100198</contig_pos>
        <strand>+</strand>
        <context>AAAGATCATC[A/C]ATGAAAGAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAATACGGAAAACAGTTGTTATCGATGGCCAAAAATAGTGAAAGATCATC</left_flank>
        <right_flank>ATGAAAGAGGGATCTACAGAAGAGAGAAAAGAGAAATTGGAGGCAGCATG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAGATGTTGCTTACGAGTCAGCAATGGACGCCGGAGAGGATACTGTAGCAAAAGCTCGTCAGTACGCAGAAGTGCTTCCAGCTGAAGAATTCGTTGCTCATATCGCATCTAGTCTTAATTACCTTTCACAGAAGCAGAATAGGTTGGCTTTATTATATTCAGATAATAAAACAAATATTGAATTTTCAGACATAATGAACTAGCTAGTGTGAAACGTCTAGAACAACAACAACATATCCAATTAATGACCACTTATGAAGATTGTGATCAAGCGATTAAATGGCTTGGCGAGCTGAAAAAACACTTCACAGAGAGTATAGTTTGTCAGATATCGATGAGGGAGCGGTTAGAAATTTGAGAAACGATAGACAGGATTTAGATAAGACTGCAATTGTAAGTATTCAATCATTTAGAATTCAGCTTGACTTCGATTCTAGAGCACATATCAATACGGAAAACAGTTGTTATCGATGGCCAAAAATAGTGAAAGATCATCCATGAAAGAGGGATCTACAGAAGAGAGAAAAGAGAAATTGGAGGCAGCATGGAAGGAGTTGGATTTAGCGATTCAGAATAATGAGCAGAGATTAAAAGTAGTCGAGTCATTTATGGCAACGCATAGACAGGTAATTAAAGGACATCAGGACAGAAACCAACACAGAAACTTTCAGATGATGGAAAGAGTAAACGAAATTGAGAGATCTCTTCGAGAACGTCTTCGAGTCAGTGGAAAACTGAATTCCATAACTTTGAGCACGGAAAGAAAACGATTGAGGCATGATGTGGATGAGCTTTCAAAGTGTGGGAATTTGTTGTCAACTCAGATCAATGCAGATCATACGTAAGTCTGAAATAAATAATTCCCAAAAAAACCTCAATGGTTTCAGAACTACGGCCCAAGATAGGCAAAATGCCATTAAACAAATATCCGATAAGATCGATGAGGTTATGACGGCTCAACGAAGGATGGAGAGTTTGATTGGAGAAGAAGAGGAGG</canonical>
            <polymorphic>TTTGAGATGTTGCTTACGAGTCAGCAATGGACGCCGGAGAGGATACTGTAGCAAAAGCTCGTCAGTACGCAGAAGTGCTTCCAGCTGAAGAATTCGTTGCTCATATCGCATCTAGTCTTAATTACCTTTCACAGAAGCAGAATAGGTTGGCTTTATTATATTCAGATAATAAAACAAATATTGAATTTTCAGACATAATGAACTAGCTAGTGTGAAACGTCTAGAACAACAACAACATATCCAATTAATGACCACTTATGAAGATTGTGATCAAGCGATTAAATGGCTTGGCGAGCTGAAAAAACACTTCACAGAGAGTATAGTTTGTCAGATATCGATGAGGGAGCGGTTAGAAATTTGAGAAACGATAGACAGGATTTAGATAAGACTGCAATTGTAAGTATTCAATCATTTAGAATTCAGCTTGACTTCGATTCTAGAGCACATATCAATACGGAAAACAGTTGTTATCGATGGCCAAAAATAGTGAAAGATCATCMATGAAAGAGGGATCTACAGAAGAGAGAAAAGAGAAATTGGAGGCAGCATGGAAGGAGTTGGATTTAGCGATTCAGAATAATGAGCAGAGATTAAAAGTAGTCGAGTCATTTATGGCAACGCATAGACAGGTAATTAAAGGACATCAGGACAGAAACCAACACAGAAACTTTCAGATGATGGAAAGAGTAAACGAAATTGAGAGATCTCTTCGAGAACGTCTTCGAGTCAGTGGAAAACTGAATTCCATAACTTTGAGCACGGAAAGAAAACGATTGAGGCATGATGTGGATGAGCTTTCAAAGTGTGGGAATTTGTTGTCAACTCAGATCAATGCAGATCATACGTAAGTCTGAAATAAATAATTCCCAAAAAAACCTCAATGGTTTCAGAACTACGGCCCAAGATAGGCAAAATGCCATTAAACAAATATCCGATAAGATCGATGAGGTTATGACGGCTCAACGAAGGATGGAGAGTTTGATTGGAGAAGAAGAGGAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 233 220 47</canonical_bands>
                <polymorphic_bands>547 233 220</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGATTCTAGAGCACATATCAAT</pcr_primer_p1>
		<pcr_primer_p2>TCATCTGAAAGTTTCTGTGTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCGATTCTAGAGCACATATCAATACGGAAAACAGTTGTTATCGATGGCCAAAAATAGTGAAAGATCATCCATGAAAGAGGGATCTACAGAAGAGAGAAAAGAGAAATTGGAGGCAGCATGGAAGGAGTTGGATTTAGCGATTCAGAATAATGAGCAGAGATTAAAAGTAGTCGAGTCATTTATGGCAACGCATAGACAGGTAATTAAAGGACATCAGGACAGAAACCAACACAGAAACTTTCAGATGA</canonical_amplicon>
		<polymorphic_amplicon>TCGATTCTAGAGCACATATCAATACGGAAAACAGTTGTTATCGATGGCCAAAAATAGTGAAAGATCATCMATGAAAGAGGGATCTACAGAAGAGAGAAAAGAGAAATTGGAGGCAGCATGGAAGGAGTTGGATTTAGCGATTCAGAATAATGAGCAGAGATTAAAAGTAGTCGAGTCATTTATGGCAACGCATAGACAGGTAATTAAAGGACATCAGGACAGAAACCAACACAGAAACTTTCAGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36843</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>110134</contig_pos>
        <strand>+</strand>
        <context>ACTATTCAAA[A/G]GGTCACTCGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAAAACTAGGCAACAGACGAGTATAAACATGTTTCAGCACTATTCAAA</left_flank>
        <right_flank>GGTCACTCGTAAAATCTGAAGAAGAAAGAATCTATAATCGTCTGAATTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGGCCTAGTTTCAAATGATTTAATCAACTTTGGGCTTAGTTATCGCTTGTCAAAGTTGCTTCATCTCATGAGAATCAGAACAGCGTGCCAGAACCATTAAGCCATTCATCTTTGGACAATCATAACAATACCTAGACTTTTGAAAATTAAAGTAGTTCTGAATCAAAAGTAAAATTATATTTTCACAAGTTTTCGTGCTTCCAAGATACTTACTGTTTTTATCAGTCTTGGTAATTGGGCTCCATCGTGTATACAATTTTAACAACTACGAAAAACCCGTTTACTCAATTGATATTGGTTCCTGTGAGAGATATCGGACCCATTTTCGATATTTTGATAAAGTTGTTGTTAGTTGATCACTTTTGATATTTTCTGTTTACTTTGAACAATAAAAAAATATTTTTTTACAAAACATTTATGTATATAATGTTTTTTTTGTTCCTCTCTTTGAAAACTAGGCAACAGACGAGTATAAACATGTTTCAGCACTATTCAAAGGGTCACTCGTAAAATCTGAAGAAGAAAGAATCTATAATCGTCTGAATTCTGGATCAAAAAATTTTTTCGGATTTATGAAATCGAAATTTAAAGGAAACAGTGATATACCGGCAATTCGATATAAATCTAATGAGAATGTTATCATGAGTGATGAAGGAAAAGCCGAAATATTTGGAGATTGCTTCAGTGAATTTTTCAACATTGACAAAGATATCCTTCCTTCTACAGGGAATCTAATTTCTAAGTTCAGCTCAGATGTCATATTCACGCCGGAGAATATCGAGTTATTACTATATAAACTGAAAGGCCGAAATAATACTTCTCCGGATAGTATCCCGTCAATATTTCTGAAAAGAGCGTGTACTCCTCTTGCGATTCCACTATGCATTATATTCACAGAAAGTTATCGAGTTGGAAGAATACCAAAATCTTGGAAGGAGGCGATTGTTATGCCGCTTCATAAGAAAGGCTCCCGCTCCGATCCTTTAAATTATAGACCA</canonical>
            <polymorphic>ACTGGCCTAGTTTCAAATGATTTAATCAACTTTGGGCTTAGTTATCGCTTGTCAAAGTTGCTTCATCTCATGAGAATCAGAACAGCGTGCCAGAACCATTAAGCCATTCATCTTTGGACAATCATAACAATACCTAGACTTTTGAAAATTAAAGTAGTTCTGAATCAAAAGTAAAATTATATTTTCACAAGTTTTCGTGCTTCCAAGATACTTACTGTTTTTATCAGTCTTGGTAATTGGGCTCCATCGTGTATACAATTTTAACAACTACGAAAAACCCGTTTACTCAATTGATATTGGTTCCTGTGAGAGATATCGGACCCATTTTCGATATTTTGATAAAGTTGTTGTTAGTTGATCACTTTTGATATTTTCTGTTTACTTTGAACAATAAAAAAATATTTTTTTACAAAACATTTATGTATATAATGTTTTTTTTGTTCCTCTCTTTGAAAACTAGGCAACAGACGAGTATAAACATGTTTCAGCACTATTCAAARGGTCACTCGTAAAATCTGAAGAAGAAAGAATCTATAATCGTCTGAATTCTGGATCAAAAAATTTTTTCGGATTTATGAAATCGAAATTTAAAGGAAACAGTGATATACCGGCAATTCGATATAAATCTAATGAGAATGTTATCATGAGTGATGAAGGAAAAGCCGAAATATTTGGAGATTGCTTCAGTGAATTTTTCAACATTGACAAAGATATCCTTCCTTCTACAGGGAATCTAATTTCTAAGTTCAGCTCAGATGTCATATTCACGCCGGAGAATATCGAGTTATTACTATATAAACTGAAAGGCCGAAATAATACTTCTCCGGATAGTATCCCGTCAATATTTCTGAAAAGAGCGTGTACTCCTCTTGCGATTCCACTATGCATTATATTCACAGAAAGTTATCGAGTTGGAAGAATACCAAAATCTTGGAAGGAGGCGATTGTTATGCCGCTTCATAAGAAAGGCTCCCGCTCCGATCCTTTAAATTATAGACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTGTTAGTTGATCACTTTTGA</pcr_primer_p1>
		<pcr_primer_p2>TTCCTTTAAATTTCGATTTCATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGTTGTTAGTTGATCACTTTTGATATTTTCTGTTTACTTTGAACAATAAAAAAATATTTTTTTACAAAACATTTATGTATATAATGTTTTTTTTGTTCCTCTCTTTGAAAACTAGGCAACAGACGAGTATAAACATGTTTCAGCACTATTCAAAGGGTCACTCGTAAAATCTGAAGAAGAAAGAATCTATAATCGTCTGAATTCTGGATCAAAAAATTTTTTCGGATTTATGAAATCGAAATTTAAAGGAA</canonical_amplicon>
		<polymorphic_amplicon>TGTTGTTAGTTGATCACTTTTGATATTTTCTGTTTACTTTGAACAATAAAAAAATATTTTTTTACAAAACATTTATGTATATAATGTTTTTTTTGTTCCTCTCTTTGAAAACTAGGCAACAGACGAGTATAAACATGTTTCAGCACTATTCAAARGGTCACTCGTAAAATCTGAAGAAGAAAGAATCTATAATCGTCTGAATTCTGGATCAAAAAATTTTTTCGGATTTATGAAATCGAAATTTAAAGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36844</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>112045</contig_pos>
        <strand>+</strand>
        <context>CCCTTCGTTG[C/T]aataaataaa</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCTAGTTTCATAGACATTTCACGTGTTAGTGGTTTTCTCCCCTTCGTTG</left_flank>
        <right_flank>AATAAATAAATAAAAAATAAACAGACGTTCTTCTTTTTTTCCCTTCTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTCAGAATTTTCAAAAAATTCAGGATGGCATACACTTCATACTTTGAAGCACTGGAAGAATGCCAGCTAAGTTCCTTGGAGTATCGCAGGCTCTATAATGATTTGGTCTTCACGTATAAAATTATTGTTTCCAAAGAAATTATCATGGAGGTTCCAATTTTCGAAATATTTAATCATGCTGGATCATTGCGACGTCACAAATACTATCTCAAATCACTTATCAAAAACTCAACAAAAATATCTTCTCAATTTCTCTCTAATAGAGTAATCAGATGTTGGAACTCTTTACCCGCCAATGTGTTTCCGGTAAAGCCCTCGTCAGCGGCTTTCAAAAATCGACTATTATCCTGTGATCTAAAACATTTTCTTGTCTTGAATTCAACTAATTACTAACTCGGTTTATCCTTCATCTCCCAATTACTACAAATGTATGTCCCTGTTATATCTCCTAGTTTCATAGACATTTCACGTGTTAGTGGTTTTCTCCCCTTCGTTGAAATAAATAAATAAAAAATAAACAGACGTTCTTCTTTTTTTCCCTTCTTCTTTTTACCTTGTTTATCAAATTGTTCCAAAACTTTCTATTTCGCAACACGAAAATTAAGAATGAGCAAGAGCTGACGTGTAGCAATTTTTTCAAACACTTTTTTATTTTGAATCGAGAGACAGAGACGACATACATTTTGTCATCTACTGGAACAAACCGAATGAAACTGGCTGAACGAAAAAGTATTCACACCAAAGACAGTTATTTCACACCAACGTTTCCAAATTTTCAAATTTATCGTCCTTGATTTTTGTTTACACTAGTTCCCCTGGCATATGTTGTCCCTTGTCTCCATTTTTCATTTCATCTTCGTCCTCTGTGTCATTGTCAAAAGAGAACCGACTCCCAAAAATGTTTCAACTTCAAATATAAAATCGTTGACTACAGTATCCATATTCTCACATTTTGCTTGATTTGACATGAAAAAAGAGTGAGAGTGAAAACAGCTTG</canonical>
            <polymorphic>GTTTTCAGAATTTTCAAAAAATTCAGGATGGCATACACTTCATACTTTGAAGCACTGGAAGAATGCCAGCTAAGTTCCTTGGAGTATCGCAGGCTCTATAATGATTTGGTCTTCACGTATAAAATTATTGTTTCCAAAGAAATTATCATGGAGGTTCCAATTTTCGAAATATTTAATCATGCTGGATCATTGCGACGTCACAAATACTATCTCAAATCACTTATCAAAAACTCAACAAAAATATCTTCTCAATTTCTCTCTAATAGAGTAATCAGATGTTGGAACTCTTTACCCGCCAATGTGTTTCCGGTAAAGCCCTCGTCAGCGGCTTTCAAAAATCGACTATTATCCTGTGATCTAAAACATTTTCTTGTCTTGAATTCAACTAATTACTAACTCGGTTTATCCTTCATCTCCCAATTACTACAAATGTATGTCCCTGTTATATCTCCTAGTTTCATAGACATTTCACGTGTTAGTGGTTTTCTCCCCTTCGTTGYAATAAATAAATAAAAAATAAACAGACGTTCTTCTTTTTTTCCCTTCTTCTTTTTACCTTGTTTATCAAATTGTTCCAAAACTTTCTATTTCGCAACACGAAAATTAAGAATGAGCAAGAGCTGACGTGTAGCAATTTTTTCAAACACTTTTTTATTTTGAATCGAGAGACAGAGACGACATACATTTTGTCATCTACTGGAACAAACCGAATGAAACTGGCTGAACGAAAAAGTATTCACACCAAAGACAGTTATTTCACACCAACGTTTCCAAATTTTCAAATTTATCGTCCTTGATTTTTGTTTACACTAGTTCCCCTGGCATATGTTGTCCCTTGTCTCCATTTTTCATTTCATCTTCGTCCTCTGTGTCATTGTCAAAAGAGAACCGACTCCCAAAAATGTTTCAACTTCAAATATAAAATCGTTGACTACAGTATCCATATTCTCACATTTTGCTTGATTTGACATGAAAAAAGAGTGAGAGTGAAAACAGCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCGACTATTATCCTGTGATCT</pcr_primer_p1>
		<pcr_primer_p2>GAAAGTTTTGGAACAATTTGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATCGACTATTATCCTGTGATCTAAAACATTTTCTTGTCTTGAATTCAACTAATTACTAACTCGGTTTATCCTTCATCTCCCAATTACTACAAATGTATGTCCCTGTTATATCTCCTAGTTTCATAGACATTTCACGTGTTAGTGGTTTTCTCCCCTTCGTTGAAATAAATAAATAAAAAATAAACAGACGTTCTTCTTTTTTTCCCTTCTTCTTTTTACCTTGTTTATCAAATTGTTCCAAAACTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAATCGACTATTATCCTGTGATCTAAAACATTTTCTTGTCTTGAATTCAACTAATTACTAACTCGGTTTATCCTTCATCTCCCAATTACTACAAATGTATGTCCCTGTTATATCTCCTAGTTTCATAGACATTTCACGTGTTAGTGGTTTTCTCCCCTTCGTTGYAATAAATAAATAAAAAATAAACAGACGTTCTTCTTTTTTTCCCTTCTTCTTTTTACCTTGTTTATCAAATTGTTCCAAAACTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36845</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>125676</contig_pos>
        <strand>+</strand>
        <context>TAAATGAATA[A/G]TCTTTTTTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGATGAAAATTCGCAGGATGGAGAGAAGAAGGATGAAAATAAATGAATA</left_flank>
        <right_flank>TCTTTTTTCGTCTCATAGTCTTTAAGTCTTTTTTGAACGCTTCATTTTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCTGGTTTTTAAGTATATCAGCTACAATCCAGGATTTGCTTCCTTCACCATAACGAATACGAAACCGGACCGACAGGCGTTTAAAGTAAGGGTGAATTCGTTTGAAAAGGGTTTCTCAGTTATCATTATTAGGTCAAATCAAGTGACAACAATATGTATAGAGCAAAGCCAAGTGTCGGATTCATCACGGTAATTTGAATTATCATAATTTTCAAATATTTATTTATTTTTTCAAAAAAGTTTAGCCCGGCGACCAAGTGCACATTCGAATCATCTACTTTAACACCAACCAGGTTCCTCCACAACCGAACGAAGTGAAGAAACACGTGGCAGTGTATCATGTGTCGGCTGGAAATGCGAAGACGTACAAAGAAGCTTTTGCGAAGAAGGTGGACGGCGTACATCATTACTTTTGTAACCATGCTGCTGATATGTTTGGTGCAGCTGCAGATGAAAATTCGCAGGATGGAGAGAAGAAGGATGAAAATAAATGAATAGTCTTTTTTCGTCTCATAGTCTTTAAGTCTTTTTTGAACGCTTCATTTTATACGAAATGTGTTCTGATGTCGTTTTGGAAAATAAAGTATTGTACAGGATTTTGAAAATTGAGTTTTAAAATGTGTTGTGTTCTATAGAAAACTTGGCACTGAGGGATCAACATCTGAAATCATCTGAAAAATTGTGGGAGCAAATTTCGAATTTCAAAGTTTATAAACATTTTCTTGAATTCGTGTTTTCTCCGAACTAGAAACATTATCAGACGTTGTAAGTTCTGAATCGGAAAATTTCGGTTTTTCTATAAGTCTAAAGTTGAAAAACGGCAATAAATAGCATTCTAAAAATTCTCTCCGCACAACCAGCACAAAATAAATTAATTTTAGACTGATTTTGGAAAAAAAAAACATTGTATCTTCAATTTCCCGGTTTCTTTGGTTCTAGGATTTTCAGAGTTCGAAGGATTTGTACAATTCGAAACTATATTTTCAAAAACCATAACT</canonical>
            <polymorphic>CATCTGGTTTTTAAGTATATCAGCTACAATCCAGGATTTGCTTCCTTCACCATAACGAATACGAAACCGGACCGACAGGCGTTTAAAGTAAGGGTGAATTCGTTTGAAAAGGGTTTCTCAGTTATCATTATTAGGTCAAATCAAGTGACAACAATATGTATAGAGCAAAGCCAAGTGTCGGATTCATCACGGTAATTTGAATTATCATAATTTTCAAATATTTATTTATTTTTTCAAAAAAGTTTAGCCCGGCGACCAAGTGCACATTCGAATCATCTACTTTAACACCAACCAGGTTCCTCCACAACCGAACGAAGTGAAGAAACACGTGGCAGTGTATCATGTGTCGGCTGGAAATGCGAAGACGTACAAAGAAGCTTTTGCGAAGAAGGTGGACGGCGTACATCATTACTTTTGTAACCATGCTGCTGATATGTTTGGTGCAGCTGCAGATGAAAATTCGCAGGATGGAGAGAAGAAGGATGAAAATAAATGAATARTCTTTTTTCGTCTCATAGTCTTTAAGTCTTTTTTGAACGCTTCATTTTATACGAAATGTGTTCTGATGTCGTTTTGGAAAATAAAGTATTGTACAGGATTTTGAAAATTGAGTTTTAAAATGTGTTGTGTTCTATAGAAAACTTGGCACTGAGGGATCAACATCTGAAATCATCTGAAAAATTGTGGGAGCAAATTTCGAATTTCAAAGTTTATAAACATTTTCTTGAATTCGTGTTTTCTCCGAACTAGAAACATTATCAGACGTTGTAAGTTCTGAATCGGAAAATTTCGGTTTTTCTATAAGTCTAAAGTTGAAAAACGGCAATAAATAGCATTCTAAAAATTCTCTCCGCACAACCAGCACAAAATAAATTAATTTTAGACTGATTTTGGAAAAAAAAAACATTGTATCTTCAATTTCCCGGTTTCTTTGGTTCTAGGATTTTCAGAGTTCGAAGGATTTGTACAATTCGAAACTATATTTTCAAAAACCATAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACCATGCTGCTGATATGTT</pcr_primer_p1>
		<pcr_primer_p2>TCAGATGTTGATCCCTCAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAACCATGCTGCTGATATGTTTGGTGCAGCTGCAGATGAAAATTCGCAGGATGGAGAGAAGAAGGATGAAAATAAATGAATAGTCTTTTTTCGTCTCATAGTCTTTAAGTCTTTTTTGAACGCTTCATTTTATACGAAATGTGTTCTGATGTCGTTTTGGAAAATAAAGTATTGTACAGGATTTTGAAAATTGAGTTTTAAAATGTGTTGTGTTCTATAGAAAACTTGGCACTGAGGGATCAACATCTGA</canonical_amplicon>
		<polymorphic_amplicon>TAACCATGCTGCTGATATGTTTGGTGCAGCTGCAGATGAAAATTCGCAGGATGGAGAGAAGAAGGATGAAAATAAATGAATARTCTTTTTTCGTCTCATAGTCTTTAAGTCTTTTTTGAACGCTTCATTTTATACGAAATGTGTTCTGATGTCGTTTTGGAAAATAAAGTATTGTACAGGATTTTGAAAATTGAGTTTTAAAATGTGTTGTGTTCTATAGAAAACTTGGCACTGAGGGATCAACATCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36846</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>149925</contig_pos>
        <strand>+</strand>
        <context>aagtctgaaa[C/T]tttttttgag</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTGAGCCCGTATGCAAGAATGTAGGAAATCATTTCCTGAAAGTCTGAAA</left_flank>
        <right_flank>TTTTTTTGAGTGAGAATTTTGCAGAAAATGACTTAGAACTCTGGAAAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGCAACTGCTCTGAAGGTAATGATGACATCTCGAGCGAAAAACGATGAAATCGACCTGTTGCGGGTGAGTTTTGTATTTTAAAGTATCCCGAAAATGGTTAATTTTCAGGCCAAGACAGACTACCTCAACCCGTCGATTTCGGCTGATTGGGCGAAGAAAAAACTGATGTGGGTGCCGAGCGAGAAAGATGGATTCGCGCTGGGAGCCGTCATCGGAAACCCACACCCAGACGGTACCATTGACATCGAGTTGATGGAGACTGGCGAACGGCAACGTGTTTCTTCTGATGACTGTCAGAAGCCGAACCCTCCAAAGTACGAGAAGTGTGAGGATATGTCAATGTTGACCTGTCTCAATGAAGCATCGGTTTTGCACAATCTAAAACAACGATACTTCTCCAATCTTTACTATGTGCGTTTCATCTCAATTTTCTTTTACTATCTCATTCTGAGCCCGTATGCAAGAATGTAGGAAATCATTTCCTGAAAGTCTGAAAATTTTTTTGAGTGAGAATTTTGCAGAAAATGACTTAGAACTCTGGAAAATATTTTCTGACTAATTGGAAATCGTTTTCCATTTTCTTGCATACGGCATCCAATCCTCGTCAGGCCGGTTATCGTCATCTAGGGAACTAGATGACGCTTATCTAAGCCTAAGCATAGTTGCTGTGCACCGCACTCATTTTGCATTGCTCAGTATACTACCAACTTGTGGGGAACCGGCTCAAATGAAGAGAACGGTATTTAAACGGAATTTTTGTCTGCGGACCGCTCCTTATTTATGGGCATTCCCGGAGAAAATTGTGTGGTACCGTTCACAGGAACAGGATTTCATTTATCTTCATTTATTGGCCTTTTATCAGGCGAGGTATAAAAAACTTGCAAAGCGTTGTATCTATCTCGTGATCCCACTGGTATCATCTCAGAACAAGGACTAGAGATCGCAGCCCTCTGCGACAATTATCAATATAATCAATTAGGGAATTATAAAGATGAGG</canonical>
            <polymorphic>ATAGCAACTGCTCTGAAGGTAATGATGACATCTCGAGCGAAAAACGATGAAATCGACCTGTTGCGGGTGAGTTTTGTATTTTAAAGTATCCCGAAAATGGTTAATTTTCAGGCCAAGACAGACTACCTCAACCCGTCGATTTCGGCTGATTGGGCGAAGAAAAAACTGATGTGGGTGCCGAGCGAGAAAGATGGATTCGCGCTGGGAGCCGTCATCGGAAACCCACACCCAGACGGTACCATTGACATCGAGTTGATGGAGACTGGCGAACGGCAACGTGTTTCTTCTGATGACTGTCAGAAGCCGAACCCTCCAAAGTACGAGAAGTGTGAGGATATGTCAATGTTGACCTGTCTCAATGAAGCATCGGTTTTGCACAATCTAAAACAACGATACTTCTCCAATCTTTACTATGTGCGTTTCATCTCAATTTTCTTTTACTATCTCATTCTGAGCCCGTATGCAAGAATGTAGGAAATCATTTCCTGAAAGTCTGAAAYTTTTTTTGAGTGAGAATTTTGCAGAAAATGACTTAGAACTCTGGAAAATATTTTCTGACTAATTGGAAATCGTTTTCCATTTTCTTGCATACGGCATCCAATCCTCGTCAGGCCGGTTATCGTCATCTAGGGAACTAGATGACGCTTATCTAAGCCTAAGCATAGTTGCTGTGCACCGCACTCATTTTGCATTGCTCAGTATACTACCAACTTGTGGGGAACCGGCTCAAATGAAGAGAACGGTATTTAAACGGAATTTTTGTCTGCGGACCGCTCCTTATTTATGGGCATTCCCGGAGAAAATTGTGTGGTACCGTTCACAGGAACAGGATTTCATTTATCTTCATTTATTGGCCTTTTATCAGGCGAGGTATAAAAAACTTGCAAAGCGTTGTATCTATCTCGTGATCCCACTGGTATCATCTCAGAACAAGGACTAGAGATCGCAGCCCTCTGCGACAATTATCAATATAATCAATTAGGGAATTATAAAGATGAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>498 246 240 16</canonical_bands>
                <polymorphic_bands>514 246 240</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>326 194 159 102 70 47 46 16 16 16 8</canonical_bands>
                <polymorphic_bands>326 194 159 102 86 47 46 16 16 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTTTACTATGTGCGTTTCATC</pcr_primer_p1>
		<pcr_primer_p2>TTAGATAAGCGTCATCTAGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTTTACTATGTGCGTTTCATCTCAATTTTCTTTTACTATCTCATTCTGAGCCCGTATGCAAGAATGTAGGAAATCATTTCCTGAAAGTCTGAAAATTTTTTTGAGTGAGAATTTTGCAGAAAATGACTTAGAACTCTGGAAAATATTTTCTGACTAATTGGAAATCGTTTTCCATTTTCTTGCATACGGCATCCAATCCTCGTCAGGCCGGTTATCGTCATCTAGGGAACTAGATGACGCTTATCTAA</canonical_amplicon>
		<polymorphic_amplicon>ATCTTTACTATGTGCGTTTCATCTCAATTTTCTTTTACTATCTCATTCTGAGCCCGTATGCAAGAATGTAGGAAATCATTTCCTGAAAGTCTGAAAYTTTTTTTGAGTGAGAATTTTGCAGAAAATGACTTAGAACTCTGGAAAATATTTTCTGACTAATTGGAAATCGTTTTCCATTTTCTTGCATACGGCATCCAATCCTCGTCAGGCCGGTTATCGTCATCTAGGGAACTAGATGACGCTTATCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36847</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>149967</contig_pos>
        <strand></strand>
        <context>CTTAGAACTC[T/C]Ggaaaatatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTCTGAAAATTTTTTTGAGTGAGAATTTTGCAGAAAATGACTTAGAACTC</left_flank>
        <right_flank>GGAAAATATTTTCTGACTAATTGGAAATCGTTTTCCATTTTCTTGCATAC</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGATGAAATCGACCTGTTGCGGGTGAGTTTTGTATTTTAAAGTATCCCGAAAATGGTTAATTTTCAGGCCAAGACAGACTACCTCAACCCGTCGATTTCGGCTGATTGGGCGAAGAAAAAACTGATGTGGGTGCCGAGCGAGAAAGATGGATTCGCGCTGGGAGCCGTCATCGGAAACCCACACCCAGACGGTACCATTGACATCGAGTTGATGGAGACTGGCGAACGGCAACGTGTTTCTTCTGATGACTGTCAGAAGCCGAACCCTCCAAAGTACGAGAAGTGTGAGGATATGTCAATGTTGACCTGTCTCAATGAAGCATCGGTTTTGCACAATCTAAAACAACGATACTTCTCCAATCTTTACTATGTGCGTTTCATCTCAATTTTCTTTTACTATCTCATTCTGAGCCCGTATGCAAGAATGTAGGAAATCATTTCCTGAAAGTCTGAAAATTTTTTTGAGTGAGAATTTTGCAGAAAATGACTTAGAACTCTGGAAAATATTTTCTGACTAATTGGAAATCGTTTTCCATTTTCTTGCATACGGCATCCAATCCTCGTCAGGCCGGTTATCGTCATCTAGGGAACTAGATGACGCTTATCTAAGCCTAAGCATAGTTGCTGTGCACCGCACTCATTTTGCATTGCTCAGTATACTACCAACTTGTGGGGAACCGGCTCAAATGAAGAGAACGGTATTTAAACGGAATTTTTGTCTGCGGACCGCTCCTTATTTATGGGCATTCCCGGAGAAAATTGTGTGGTACCGTTCACAGGAACAGGATTTCATTTATCTTCATTTATTGGCCTTTTATCAGGCGAGGTATAAAAAACTTGCAAAGCGTTGTATCTATCTCGTGATCCCACTGGTATCATCTCAGAACAAGGACTAGAGATCGCAGCCCTCTGCGACAATTATCAATATAATCAATTAGGGAATTATAAAGATGAGGGAAAAACTAAATTTGCAAAGTGTTTTTCAGACATACTCTGGA</canonical>
            <polymorphic>AACGATGAAATCGACCTGTTGCGGGTGAGTTTTGTATTTTAAAGTATCCCGAAAATGGTTAATTTTCAGGCCAAGACAGACTACCTCAACCCGTCGATTTCGGCTGATTGGGCGAAGAAAAAACTGATGTGGGTGCCGAGCGAGAAAGATGGATTCGCGCTGGGAGCCGTCATCGGAAACCCACACCCAGACGGTACCATTGACATCGAGTTGATGGAGACTGGCGAACGGCAACGTGTTTCTTCTGATGACTGTCAGAAGCCGAACCCTCCAAAGTACGAGAAGTGTGAGGATATGTCAATGTTGACCTGTCTCAATGAAGCATCGGTTTTGCACAATCTAAAACAACGATACTTCTCCAATCTTTACTATGTGCGTTTCATCTCAATTTTCTTTTACTATCTCATTCTGAGCCCGTATGCAAGAATGTAGGAAATCATTTCCTGAAAGTCTGAAAATTTTTTTGAGTGAGAATTTTGCAGAAAATGACTTAGAACTCYGGAAAATATTTTCTGACTAATTGGAAATCGTTTTCCATTTTCTTGCATACGGCATCCAATCCTCGTCAGGCCGGTTATCGTCATCTAGGGAACTAGATGACGCTTATCTAAGCCTAAGCATAGTTGCTGTGCACCGCACTCATTTTGCATTGCTCAGTATACTACCAACTTGTGGGGAACCGGCTCAAATGAAGAGAACGGTATTTAAACGGAATTTTTGTCTGCGGACCGCTCCTTATTTATGGGCATTCCCGGAGAAAATTGTGTGGTACCGTTCACAGGAACAGGATTTCATTTATCTTCATTTATTGGCCTTTTATCAGGCGAGGTATAAAAAACTTGCAAAGCGTTGTATCTATCTCGTGATCCCACTGGTATCATCTCAGAACAAGGACTAGAGATCGCAGCCCTCTGCGACAATTATCAATATAATCAATTAGGGAATTATAAAGATGAGGGAAAAACTAAATTTGCAAAGTGTTTTTCAGACATACTCTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTTTACTATGTGCGTTTCATC</pcr_primer_p1>
		<pcr_primer_p2>TTAGATAAGCGTCATCTAGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTTTACTATGTGCGTTTCATCTCAATTTTCTTTTACTATCTCATTCTGAGCCCGTATGCAAGAATGTAGGAAATCATTTCCTGAAAGTCTGAAAATTTTTTTGAGTGAGAATTTTGCAGAAAATGACTTAGAACTCTGGAAAATATTTTCTGACTAATTGGAAATCGTTTTCCATTTTCTTGCATACGGCATCCAATCCTCGTCAGGCCGGTTATCGTCATCTAGGGAACTAGATGACGCTTATCTAA</canonical_amplicon>
		<polymorphic_amplicon>ATCTTTACTATGTGCGTTTCATCTCAATTTTCTTTTACTATCTCATTCTGAGCCCGTATGCAAGAATGTAGGAAATCATTTCCTGAAAGTCTGAAAATTTTTTTGAGTGAGAATTTTGCAGAAAATGACTTAGAACTCYGGAAAATATTTTCTGACTAATTGGAAATCGTTTTCCATTTTCTTGCATACGGCATCCAATCCTCGTCAGGCCGGTTATCGTCATCTAGGGAACTAGATGACGCTTATCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36848</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>150291</contig_pos>
        <strand>+</strand>
        <context>CTTTTATCAG[A/G]CGAGGTATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTCACAGGAACAGGATTTCATTTATCTTCATTTATTGGCCTTTTATCAG</left_flank>
        <right_flank>CGAGGTATAAAAAACTTGCAAAGCGTTGTATCTATCTCGTGATCCCACTG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGTTTTGCACAATCTAAAACAACGATACTTCTCCAATCTTTACTATGTGCGTTTCATCTCAATTTTCTTTTACTATCTCATTCTGAGCCCGTATGCAAGAATGTAGGAAATCATTTCCTGAAAGTCTGAAAATTTTTTTGAGTGAGAATTTTGCAGAAAATGACTTAGAACTCTGGAAAATATTTTCTGACTAATTGGAAATCGTTTTCCATTTTCTTGCATACGGCATCCAATCCTCGTCAGGCCGGTTATCGTCATCTAGGGAACTAGATGACGCTTATCTAAGCCTAAGCATAGTTGCTGTGCACCGCACTCATTTTGCATTGCTCAGTATACTACCAACTTGTGGGGAACCGGCTCAAATGAAGAGAACGGTATTTAAACGGAATTTTTGTCTGCGGACCGCTCCTTATTTATGGGCATTCCCGGAGAAAATTGTGTGGTACCGTTCACAGGAACAGGATTTCATTTATCTTCATTTATTGGCCTTTTATCAGGCGAGGTATAAAAAACTTGCAAAGCGTTGTATCTATCTCGTGATCCCACTGGTATCATCTCAGAACAAGGACTAGAGATCGCAGCCCTCTGCGACAATTATCAATATAATCAATTAGGGAATTATAAAGATGAGGGAAAAACTAAATTTGCAAAGTGTTTTTCAGACATACTCTGGACTTTTCTGTGTCGTCATCAACCCATACAAACGCATTCCAATTTACACCGACTCAATCGCCGAGCAGTTCAAGGGGAAGAAGAGAAAAGAAATGCCACCTCACGTATTCGCCGTCACCGAAGAAGCCTATCGCAGTATGCTTCAAGAACGAGATGATCAATCTATTCTGTGCACGTATGGAAATTAAAATTGATTCTGATTCTGATAACAAACATTTTTCAGAGGAGAATCAGGAGCTGGAAAAACGGAAAACACCAAAAAGGTCATTCAGTACTTGGCATATGTAGCCAATCGGAATATGTTGAAAAACCGAAAGACTTCAACT</canonical>
            <polymorphic>TCGGTTTTGCACAATCTAAAACAACGATACTTCTCCAATCTTTACTATGTGCGTTTCATCTCAATTTTCTTTTACTATCTCATTCTGAGCCCGTATGCAAGAATGTAGGAAATCATTTCCTGAAAGTCTGAAAATTTTTTTGAGTGAGAATTTTGCAGAAAATGACTTAGAACTCTGGAAAATATTTTCTGACTAATTGGAAATCGTTTTCCATTTTCTTGCATACGGCATCCAATCCTCGTCAGGCCGGTTATCGTCATCTAGGGAACTAGATGACGCTTATCTAAGCCTAAGCATAGTTGCTGTGCACCGCACTCATTTTGCATTGCTCAGTATACTACCAACTTGTGGGGAACCGGCTCAAATGAAGAGAACGGTATTTAAACGGAATTTTTGTCTGCGGACCGCTCCTTATTTATGGGCATTCCCGGAGAAAATTGTGTGGTACCGTTCACAGGAACAGGATTTCATTTATCTTCATTTATTGGCCTTTTATCAGRCGAGGTATAAAAAACTTGCAAAGCGTTGTATCTATCTCGTGATCCCACTGGTATCATCTCAGAACAAGGACTAGAGATCGCAGCCCTCTGCGACAATTATCAATATAATCAATTAGGGAATTATAAAGATGAGGGAAAAACTAAATTTGCAAAGTGTTTTTCAGACATACTCTGGACTTTTCTGTGTCGTCATCAACCCATACAAACGCATTCCAATTTACACCGACTCAATCGCCGAGCAGTTCAAGGGGAAGAAGAGAAAAGAAATGCCACCTCACGTATTCGCCGTCACCGAAGAAGCCTATCGCAGTATGCTTCAAGAACGAGATGATCAATCTATTCTGTGCACGTATGGAAATTAAAATTGATTCTGATTCTGATAACAAACATTTTTCAGAGGAGAATCAGGAGCTGGAAAAACGGAAAACACCAAAAAGGTCATTCAGTACTTGGCATATGTAGCCAATCGGAATATGTTGAAAAACCGAAAGACTTCAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAATGAAGAGAACGGTATTTA</pcr_primer_p1>
		<pcr_primer_p2>TATATTGATAATTGTCGCAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCAAATGAAGAGAACGGTATTTAAACGGAATTTTTGTCTGCGGACCGCTCCTTATTTATGGGCATTCCCGGAGAAAATTGTGTGGTACCGTTCACAGGAACAGGATTTCATTTATCTTCATTTATTGGCCTTTTATCAGGCGAGGTATAAAAAACTTGCAAAGCGTTGTATCTATCTCGTGATCCCACTGGTATCATCTCAGAACAAGGACTAGAGATCGCAGCCCTCTGCGACAATTATCAATATA</canonical_amplicon>
		<polymorphic_amplicon>TCAAATGAAGAGAACGGTATTTAAACGGAATTTTTGTCTGCGGACCGCTCCTTATTTATGGGCATTCCCGGAGAAAATTGTGTGGTACCGTTCACAGGAACAGGATTTCATTTATCTTCATTTATTGGCCTTTTATCAGRCGAGGTATAAAAAACTTGCAAAGCGTTGTATCTATCTCGTGATCCCACTGGTATCATCTCAGAACAAGGACTAGAGATCGCAGCCCTCTGCGACAATTATCAATATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36849</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>157658</contig_pos>
        <strand>+</strand>
        <context>TCACATGAGA[A/G]GAACCAATCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGAAAAGTCTTGTTTTCAATTCAAAAGTTTCAGAATGGCTCACATGAGA</left_flank>
        <right_flank>GAACCAATCATGAAAAATCGCCAACGGAAGCGGAGAACTCGACGATTCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTACCGCTTCCCGGTATAAGGCTTTCAAAAAAAACGGAAAGTGTCAGAAGTAATTTTAACCTCCACAAATCAATTGACACATTTCCGTTCAGATTTTAAAAATTTTATTGCTGAGTTGAAGATGTCGAATAAAATAAAATTTGTGTTTTCAACATACATTGAAAACTCAAATGTTTATTGCAACCTTTTCTGTACTCGTATTATACTAACGCTAATGAATTCCGGAATGCAACAATGAATTGATTGAAATTTCAAAATGATTGTTTTTTATCAGAAGCATAACGTATTTTAATACCTTTTTAGAGAGGGAAAGAAAGAAAAAGTTATCTGAAAGTGTGTTTCTTCGTCTGTGTTTTCCCGTAAGGTGTTTGCACAAGTGCTACGTTGTCGATTTACGAGGGATGTCCAACTAATACTAGTTTCCAGTTTTAGAATATTTGTATAAACTGAAAAGTCTTGTTTTCAATTCAAAAGTTTCAGAATGGCTCACATGAGAAGAACCAATCATGAAAAATCGCCAACGGAAGCGGAGAACTCGACGATTCTACTTAAAGAGCGGTAAAAAATAACTGTAAGCCAAGAGTTTCTTGTTAATTTTGCAGTTACGATCTTCTAAAATGGCTAACGAATGTCGAGATGCGTTCACCGAATTTTTTGATCCCTGTACAAATTGCCAACTATATAGAATCTCTTCCCATATGTAAATTAGCTGTCTCTCCGTAAGTTATCATATTCAAAAACTGAAATTTTTCATCTAGTCTCTTTTCAGAAAATGCGATCGAGTTGCTTTGATGAGTTATGCTCGTCAATTGGACATTTATCAAATCAACGGAGAAATCCTAGAACAGGAATCAAGTGTGCAAGTTCTTGAAGAAACGTCACCTGAATATTGTCTCCTTCAATTTTCTTCCTCTAGTACTCTTCTTCTTTCATCTCGAAGTACACCTCACATTGACGTGTTTGATAATATGGGCGCATATTGCTACGACATTCCATT</canonical>
            <polymorphic>TGTTTACCGCTTCCCGGTATAAGGCTTTCAAAAAAAACGGAAAGTGTCAGAAGTAATTTTAACCTCCACAAATCAATTGACACATTTCCGTTCAGATTTTAAAAATTTTATTGCTGAGTTGAAGATGTCGAATAAAATAAAATTTGTGTTTTCAACATACATTGAAAACTCAAATGTTTATTGCAACCTTTTCTGTACTCGTATTATACTAACGCTAATGAATTCCGGAATGCAACAATGAATTGATTGAAATTTCAAAATGATTGTTTTTTATCAGAAGCATAACGTATTTTAATACCTTTTTAGAGAGGGAAAGAAAGAAAAAGTTATCTGAAAGTGTGTTTCTTCGTCTGTGTTTTCCCGTAAGGTGTTTGCACAAGTGCTACGTTGTCGATTTACGAGGGATGTCCAACTAATACTAGTTTCCAGTTTTAGAATATTTGTATAAACTGAAAAGTCTTGTTTTCAATTCAAAAGTTTCAGAATGGCTCACATGAGARGAACCAATCATGAAAAATCGCCAACGGAAGCGGAGAACTCGACGATTCTACTTAAAGAGCGGTAAAAAATAACTGTAAGCCAAGAGTTTCTTGTTAATTTTGCAGTTACGATCTTCTAAAATGGCTAACGAATGTCGAGATGCGTTCACCGAATTTTTTGATCCCTGTACAAATTGCCAACTATATAGAATCTCTTCCCATATGTAAATTAGCTGTCTCTCCGTAAGTTATCATATTCAAAAACTGAAATTTTTCATCTAGTCTCTTTTCAGAAAATGCGATCGAGTTGCTTTGATGAGTTATGCTCGTCAATTGGACATTTATCAAATCAACGGAGAAATCCTAGAACAGGAATCAAGTGTGCAAGTTCTTGAAGAAACGTCACCTGAATATTGTCTCCTTCAATTTTCTTCCTCTAGTACTCTTCTTCTTTCATCTCGAAGTACACCTCACATTGACGTGTTTGATAATATGGGCGCATATTGCTACGACATTCCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTGCTACGTTGTCGATTTA</pcr_primer_p1>
		<pcr_primer_p2>TAGCCATTTTAGAAGATCGTAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGTGCTACGTTGTCGATTTACGAGGGATGTCCAACTAATACTAGTTTCCAGTTTTAGAATATTTGTATAAACTGAAAAGTCTTGTTTTCAATTCAAAAGTTTCAGAATGGCTCACATGAGAAGAACCAATCATGAAAAATCGCCAACGGAAGCGGAGAACTCGACGATTCTACTTAAAGAGCGGTAAAAAATAACTGTAAGCCAAGAGTTTCTTGTTAATTTTGCAGTTACGATCTTCTAAAATGGCTA</canonical_amplicon>
		<polymorphic_amplicon>AAGTGCTACGTTGTCGATTTACGAGGGATGTCCAACTAATACTAGTTTCCAGTTTTAGAATATTTGTATAAACTGAAAAGTCTTGTTTTCAATTCAAAAGTTTCAGAATGGCTCACATGAGARGAACCAATCATGAAAAATCGCCAACGGAAGCGGAGAACTCGACGATTCTACTTAAAGAGCGGTAAAAAATAACTGTAAGCCAAGAGTTTCTTGTTAATTTTGCAGTTACGATCTTCTAAAATGGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36850</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>178589</contig_pos>
        <strand></strand>
        <context>agataattta[T/G]ctcaaagCGC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TGATCAGTTGACAGGTTTTTGATATCTTTTGAAAGAACAGAGATAATTTA</left_flank>
        <right_flank>CTCAAAGCGCACATGTATTTTCTCTTTTATTAAAGAAAATACGGTAGTTG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAGAGGGGATTAGAGCTTCTGGGTTCTGCTCTTTTTCGATGATTCTCTTCTCCATTTCCATAATCCCAGCCGACATGTCATCTGCCATTCGCACTTCAATTCTCTCCGAAATTTATACGCTCTCTTTTAGTCGTTTCCGAAATAGATAACGCCGTTCTTCTTCTTCTCCTTTTTTCGTCGACACCGCCAAATGACTTCTGAATTGTTGAAATAAAATATACGTTTTCAGATGAGGAGCCATTGGAGGAGAAGATCAAAATTGATGAAATTGTGGAGAAGTTAACATCAGCAATAGACGAATATTGCAAAATGAACAAGAGAAATGAGGTTAGGATTACATAACCTGATAGAAGCCAAACCTACTTTGAGCTTAATGATTTCGGTTCCTTCAAGAAATATATAACAAATTTCAACTGATAAACTATTTATCATAATATCACCATTATTTGATCAGTTGACAGGTTTTTGATATCTTTTGAAAGAACAGAGATAATTTATCTCAAAGCGCACATGTATTTTCTCTTTTATTAAAGAAAATACGGTAGTTGGGTTGATTTTGAACTAAACGACAACCAAATTTAAAAAATTTTTGATCAAATTTATAAATACACATGGCTTACAGAGATACCCCCAGCTATGCGAATGTCTTGAGGTTCTAAAATCCACGCGACACCTTCCGATCTCTCGACTCTTCTTCTCACGTCTTCTTGGCACGACTCCACTCGAATCGATTCTCTGTGATCTTCTCAATTCTCCGCTCCCACCGCCGCCAACATTACCACTTTTCCCCCAGTTTCCTCCTAGAACATAAACTACTTTTCTTTCGATTCTTTTGAAACATTTCGTTCCTGTGACCGAACACATCCCGATGATATTATCTATAAATCGTTTCTAGTCATTTCGTTAAATTACAGCTTTTACAAAATTGTATATTCATCCAGTCTCCCAAACGTTACTCTGATGTCAATAAACTTTTCTTTTTTCCTATTTTTTTTCTC</canonical>
            <polymorphic>CCAAGAGGGGATTAGAGCTTCTGGGTTCTGCTCTTTTTCGATGATTCTCTTCTCCATTTCCATAATCCCAGCCGACATGTCATCTGCCATTCGCACTTCAATTCTCTCCGAAATTTATACGCTCTCTTTTAGTCGTTTCCGAAATAGATAACGCCGTTCTTCTTCTTCTCCTTTTTTCGTCGACACCGCCAAATGACTTCTGAATTGTTGAAATAAAATATACGTTTTCAGATGAGGAGCCATTGGAGGAGAAGATCAAAATTGATGAAATTGTGGAGAAGTTAACATCAGCAATAGACGAATATTGCAAAATGAACAAGAGAAATGAGGTTAGGATTACATAACCTGATAGAAGCCAAACCTACTTTGAGCTTAATGATTTCGGTTCCTTCAAGAAATATATAACAAATTTCAACTGATAAACTATTTATCATAATATCACCATTATTTGATCAGTTGACAGGTTTTTGATATCTTTTGAAAGAACAGAGATAATTTAKCTCAAAGCGCACATGTATTTTCTCTTTTATTAAAGAAAATACGGTAGTTGGGTTGATTTTGAACTAAACGACAACCAAATTTAAAAAATTTTTGATCAAATTTATAAATACACATGGCTTACAGAGATACCCCCAGCTATGCGAATGTCTTGAGGTTCTAAAATCCACGCGACACCTTCCGATCTCTCGACTCTTCTTCTCACGTCTTCTTGGCACGACTCCACTCGAATCGATTCTCTGTGATCTTCTCAATTCTCCGCTCCCACCGCCGCCAACATTACCACTTTTCCCCCAGTTTCCTCCTAGAACATAAACTACTTTTCTTTCGATTCTTTTGAAACATTTCGTTCCTGTGACCGAACACATCCCGATGATATTATCTATAAATCGTTTCTAGTCATTTCGTTAAATTACAGCTTTTACAAAATTGTATATTCATCCAGTCTCCCAAACGTTACTCTGATGTCAATAAACTTTTCTTTTTTCCTATTTTTTTTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGAGAAATGAGGTTAGGATTA</pcr_primer_p1>
		<pcr_primer_p2>TAGTTCAAAATCAACCCAACTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAGAGAAATGAGGTTAGGATTACATAACCTGATAGAAGCCAAACCTACTTTGAGCTTAATGATTTCGGTTCCTTCAAGAAATATATAACAAATTTCAACTGATAAACTATTTATCATAATATCACCATTATTTGATCAGTTGACAGGTTTTTGATATCTTTTGAAAGAACAGAGATAATTTATCTCAAAGCGCACATGTATTTTCTCTTTTATTAAAGAAAATACGGTAGTTGGGTTGATTTTGAACTA</canonical_amplicon>
		<polymorphic_amplicon>CAAGAGAAATGAGGTTAGGATTACATAACCTGATAGAAGCCAAACCTACTTTGAGCTTAATGATTTCGGTTCCTTCAAGAAATATATAACAAATTTCAACTGATAAACTATTTATCATAATATCACCATTATTTGATCAGTTGACAGGTTTTTGATATCTTTTGAAAGAACAGAGATAATTTAKCTCAAAGCGCACATGTATTTTCTCTTTTATTAAAGAAAATACGGTAGTTGGGTTGATTTTGAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36851</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>296557</contig_pos>
        <strand></strand>
        <context>TTATTGGCCG[C/T]TACTAATCGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACTGAGTTGGATGGATTGGAGAAGTCAAGTCGAGTTGTTTTATTGGCCG</left_flank>
        <right_flank>TACTAATCGACCAGATCAGTTGGACAGTGCTCTCTTAAGACCTGGTCGTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGCCAGAAAGAGAATCCGACCGACTGGAATCAGACAGTTCATTCTAGAAGTTCCAAATGTTTCGTGGAATGATATTGGTGGAAATGAAGAATTGAAACTGGAGATTCAGCAAGCGGTAATTTGGCCTCAGAAACATCCTGAAGCATTTGAGAGATTCGGAATCGATCCACCGGCTGGCATCTTGCTTTACGGTCCACCAGGTTGCAGTAAAACTCTCATCGCTCGTGCGTTGGCAAATGAGGCAAAAATGAATTTTCTGGCTGTAAAAGGTCCTGAGCTATTCAGTAAATGGGTTGGAGATTCTGAAAAAGCCATTCGAGATTTATTCACAAGAGCGAGACAAGTTGCTCCAACGATTGTATTCTTCGACGAAATTGATGCTGTTGGATCGTCGCGAGGATCAGAAAAAAGTTCAGGAGTGTCGGATCGAGTTTTGGCTCAATTGCTCACTGAGTTGGATGGATTGGAGAAGTCAAGTCGAGTTGTTTTATTGGCCGCTACTAATCGACCAGATCAGTTGGACAGTGCTCTCTTAAGACCTGGTCGTTTGGATCGTGCGATTTACGTCGGTTTGCCATGCGAAGAAACCAGAAGAGCAATTCTAAAAATGCGAACCCGGAAAATGGCTATCGATGACGTCACAGCTACAATTCAGAAGCTAGTTGAGAAAACTTCAGGATATTCTGGAGCAGAGTTAGTGGCAGTTTGTCGAACTGCTGCGATGTTCGCAATGAGAGAAAATATCGAAGCCAACATTGTCGAATGGAAACATTTTGAAGACGGCGAGTTCCTCGAATCCGAGCTTAATTTAATGAGCTACATTTTCAGCTCTTACCGCGGTTGTTTCTAGAACGGAGGCCTACCTTCTGGAGATTTACGACGACTTCAAAGCAGGTCGTACATCTAATGCATGATTTCAAATCCTATTTTTTCTTGTTATTGTTGATTTACTTGTTGCAAAGTTTCTATAAATTCATGTTTTGTTATTCCAATGATGT</canonical>
            <polymorphic>GATGCCAGAAAGAGAATCCGACCGACTGGAATCAGACAGTTCATTCTAGAAGTTCCAAATGTTTCGTGGAATGATATTGGTGGAAATGAAGAATTGAAACTGGAGATTCAGCAAGCGGTAATTTGGCCTCAGAAACATCCTGAAGCATTTGAGAGATTCGGAATCGATCCACCGGCTGGCATCTTGCTTTACGGTCCACCAGGTTGCAGTAAAACTCTCATCGCTCGTGCGTTGGCAAATGAGGCAAAAATGAATTTTCTGGCTGTAAAAGGTCCTGAGCTATTCAGTAAATGGGTTGGAGATTCTGAAAAAGCCATTCGAGATTTATTCACAAGAGCGAGACAAGTTGCTCCAACGATTGTATTCTTCGACGAAATTGATGCTGTTGGATCGTCGCGAGGATCAGAAAAAAGTTCAGGAGTGTCGGATCGAGTTTTGGCTCAATTGCTCACTGAGTTGGATGGATTGGAGAAGTCAAGTCGAGTTGTTTTATTGGCCGYTACTAATCGACCAGATCAGTTGGACAGTGCTCTCTTAAGACCTGGTCGTTTGGATCGTGCGATTTACGTCGGTTTGCCATGCGAAGAAACCAGAAGAGCAATTCTAAAAATGCGAACCCGGAAAATGGCTATCGATGACGTCACAGCTACAATTCAGAAGCTAGTTGAGAAAACTTCAGGATATTCTGGAGCAGAGTTAGTGGCAGTTTGTCGAACTGCTGCGATGTTCGCAATGAGAGAAAATATCGAAGCCAACATTGTCGAATGGAAACATTTTGAAGACGGCGAGTTCCTCGAATCCGAGCTTAATTTAATGAGCTACATTTTCAGCTCTTACCGCGGTTGTTTCTAGAACGGAGGCCTACCTTCTGGAGATTTACGACGACTTCAAAGCAGGTCGTACATCTAATGCATGATTTCAAATCCTATTTTTTCTTGTTATTGTTGATTTACTTGTTGCAAAGTTTCTATAAATTCATGTTTTGTTATTCCAATGATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>497 340 163</canonical_bands>
                <polymorphic_bands>837 163</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>499 279 222</canonical_bands>
                <polymorphic_bands>721 279</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTCTTCGACGAAATTGATG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTAGAATTGCTCTTCTGGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATTCTTCGACGAAATTGATGCTGTTGGATCGTCGCGAGGATCAGAAAAAAGTTCAGGAGTGTCGGATCGAGTTTTGGCTCAATTGCTCACTGAGTTGGATGGATTGGAGAAGTCAAGTCGAGTTGTTTTATTGGCCGCTACTAATCGACCAGATCAGTTGGACAGTGCTCTCTTAAGACCTGGTCGTTTGGATCGTGCGATTTACGTCGGTTTGCCATGCGAAGAAACCAGAAGAGCAATTCTAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TATTCTTCGACGAAATTGATGCTGTTGGATCGTCGCGAGGATCAGAAAAAAGTTCAGGAGTGTCGGATCGAGTTTTGGCTCAATTGCTCACTGAGTTGGATGGATTGGAGAAGTCAAGTCGAGTTGTTTTATTGGCCGYTACTAATCGACCAGATCAGTTGGACAGTGCTCTCTTAAGACCTGGTCGTTTGGATCGTGCGATTTACGTCGGTTTGCCATGCGAAGAAACCAGAAGAGCAATTCTAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36852</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>306813</contig_pos>
        <strand>-</strand>
        <context>GAAAAAACGT[A/C]TGGCGCGATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACAGAACAATTCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAACGT</left_flank>
        <right_flank>TGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCTTTTAGCTCTTTTTTCCGCCTCCAACCACCCAAAAAAAGAACGCGCTCTTCCTCGAACCTATCATCGTCCAACCGTTATTTCTTCAGCGGTTGAGACGTTATTTGAGCCGTTTAGAATAATTTAGTTGTCGCCGTTGTTTGTTAATTGTGAGAATAAAATGGAGAGTTTTAGTATGATTTTTTTTCAAAATTTTTTACTTCACGAAATTCTATGTTGCCATCGAAGGGCGTCTATACTTTTTATGCTGAAAAGTATCATGTATCTTCGGCTCATCTTTTATTTCGGAAGCATTTTTAGGAAACTTCTTATCCGTTTTTTTTTCACTGTATTCATTTTCCTTTTCTTTTTTTTTCTATAAAATGAATGATGGTAACTTAGTAAAATAAAATAAATTGGTAAAATAAAATAAAACTTAGTAAAATAAAATAAATTGCACGCTCTCCCACAGAACAATTCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAACGTGTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTATATCTGATTTTGTGGAGTTCCAAGATGATTCAAATGATTCTTAAAAAATTAATTAGTGGTTATAGATTCATGTATGGTCGTTTTCCGGAAGAAAAAAATGTCAAAAATGGTCGTTTTGAAAGGTTTTTTAAGAAAAACATCTATCTCCTCNNNNNNNNNNNNCGCACCACGTCGATTACCTGAAAACAATCATCCATTCAAAAGATGTGGCTATATATAAAAAAGAATATGAACGATAAATTGGAATTTCAGACTTTCCTAAATTGAGAAAATTGGGCTGTTTCGCAATTCCAAACAAAACGACGAAGAGTATTTGAAAATCAGTTATGTTAACTTATCTTCAGGCGACAATATCATATGGCGCATTGAGAAATTGAAAAAGACCGGTACTGAGAAAATAGTAGTATCATAAATACGAAATCACAAAAATCCTATCGGTATATCTTCGCTGC</canonical>
            <polymorphic>TCTCTTTTAGCTCTTTTTTCCGCCTCCAACCACCCAAAAAAAGAACGCGCTCTTCCTCGAACCTATCATCGTCCAACCGTTATTTCTTCAGCGGTTGAGACGTTATTTGAGCCGTTTAGAATAATTTAGTTGTCGCCGTTGTTTGTTAATTGTGAGAATAAAATGGAGAGTTTTAGTATGATTTTTTTTCAAAATTTTTTACTTCACGAAATTCTATGTTGCCATCGAAGGGCGTCTATACTTTTTATGCTGAAAAGTATCATGTATCTTCGGCTCATCTTTTATTTCGGAAGCATTTTTAGGAAACTTCTTATCCGTTTTTTTTTCACTGTATTCATTTTCCTTTTCTTTTTTTTTCTATAAAATGAATGATGGTAACTTAGTAAAATAAAATAAATTGGTAAAATAAAATAAAACTTAGTAAAATAAAATAAATTGCACGCTCTCCCACAGAACAATTCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAACGTMTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTATATCTGATTTTGTGGAGTTCCAAGATGATTCAAATGATTCTTAAAAAATTAATTAGTGGTTATAGATTCATGTATGGTCGTTTTCCGGAAGAAAAAAATGTCAAAAATGGTCGTTTTGAAAGGTTTTTTAAGAAAAACATCTATCTCCTCNNNNNNNNNNNNCGCACCACGTCGATTACCTGAAAACAATCATCCATTCAAAAGATGTGGCTATATATAAAAAAGAATATGAACGATAAATTGGAATTTCAGACTTTCCTAAATTGAGAAAATTGGGCTGTTTCGCAATTCCAAACAAAACGACGAAGAGTATTTGAAAATCAGTTATGTTAACTTATCTTCAGGCGACAATATCATATGGCGCATTGAGAAATTGAAAAAGACCGGTACTGAGAAAATAGTAGTATCATAAATACGAAATCACAAAAATCCTATCGGTATATCTTCGCTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>214 122 122 112 108 52 51 50 44 40 32 29 10 9 3 2</canonical_bands>
                <polymorphic_bands>214 122 122 112 108 61 52 51 44 40 32 29 10 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCACTGTATTCATTTTCCTTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATCTTGGAACTCCACAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCACTGTATTCATTTTCCTTTTCTTTTTTTTTCTATAAAATGAATGATGGTAACTTAGTAAAATAAAATAAATTGGTAAAATAAAATAAAACTTAGTAAAATAAAATAAATTGCACGCTCTCCCACAGAACAATTCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAACGTGTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTATATCTGATTTTGTGGAGTTCCAAGAT</canonical_amplicon>
		<polymorphic_amplicon>TCACTGTATTCATTTTCCTTTTCTTTTTTTTTCTATAAAATGAATGATGGTAACTTAGTAAAATAAAATAAATTGGTAAAATAAAATAAAACTTAGTAAAATAAAATAAATTGCACGCTCTCCCACAGAACAATTCCGAACTGCAAATTAATTTTTGATCTACAGAAAAAACGTMTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTATATCTGATTTTGTGGAGTTCCAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36853</snp_id>
        <super_contig>c011500593.Contig1</super_contig>
        <contig_pos>310248</contig_pos>
        <strand>-</strand>
        <context>TTGAAATGGG[A/G/C/T]GGGAGTTCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G/C/T</alleles>
        <left_flank>ATCGTCAGTCATGATGCATTGTCTGCAAACACCGAACCTATTGAAATGGG</left_flank>
        <right_flank>GGGAGTTCAAAAGTATTACAGTAATCCTTGTCATTGTAACAAGAAGACTA</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGACAAAATAGAATGATGAACTTCAACCTACATGCAATTGCTTCGAGGATCAACGAACAACTTAGAAAATGTACTATCGGACACTAAAAAATGCCACAACTGTCAAGTGACGGGAATTTTTGGATGGGAGGAGAAATGAGAGAGAAAGAGACAACAGACCGGGAAAGTATTTAGGTCGGGAAATCACAACGCAAATAGTGAGAGAAACAGAAACAAAAAGAATATCAAAAGGCAGAAACACGTGAGAACTAAGATGAATCGGAGCCGCGGGTCTCTCGGATTGTTCCAGAATTAGGCTCGCGATAATTCATCATTCCAAGATTACTAGGGCGAGATGTTGATGACGTCATCTCCATTTCTTGCTCTTCCGGAAGACACTCGAATTGGGTGATTCGAGAGCTGAAAAGTTGATTTTATAAAAATGAATGATGAAAAATGTTCCCCGGATATCGTCAGTCATGATGCATTGTCTGCAAACACCGAACCTATTGAAATGGGCGGGAGTTCAAAAGTATTACAGTAATCCTTGTCATTGTAACAAGAAGACTAAGTTTCTGGCGAAAAGTACACCTACTTCTTTGTGTTTCCAGTCGAATCCTTATCCCCAGACTGTCTCTTGATTCCTCGTCGTTTCATCAAAGGTGCAGCTGCCACATCAAGCAAGTGGAATCCGTCCCGGTTTGCATGAAGGAAGGCGCGCAGGGTCTCATTGAAGGTTTCATCTGAAGATTATCATTAAAAAGTTGAGAGATCTAAAAAATGAGGTACCAGCAGAAGAAGGAAGGATGCTTGGGGTTTGAAGTGGTGTATCCATAGCAGCAGACGACTTTAACCACATGTGAGCAGTCAGCTCTTGCATCGAAAGTCGTTTCTTTGGGTCGACGGTTAGAAGACCAGTGATCAGATTCTTAGCGTCTGATGAGACATTTGTCCAGGCATCACCTTCAAATGAGAATTCAGCTCGACAGATTCTTTGCATAATTTCAGTGGCGGATTCCT</canonical>
            <polymorphic>GCGACAAAATAGAATGATGAACTTCAACCTACATGCAATTGCTTCGAGGATCAACGAACAACTTAGAAAATGTACTATCGGACACTAAAAAATGCCACAACTGTCAAGTGACGGGAATTTTTGGATGGGAGGAGAAATGAGAGAGAAAGAGACAACAGACCGGGAAAGTATTTAGGTCGGGAAATCACAACGCAAATAGTGAGAGAAACAGAAACAAAAAGAATATCAAAAGGCAGAAACACGTGAGAACTAAGATGAATCGGAGCCGCGGGTCTCTCGGATTGTTCCAGAATTAGGCTCGCGATAATTCATCATTCCAAGATTACTAGGGCGAGATGTTGATGACGTCATCTCCATTTCTTGCTCTTCCGGAAGACACTCGAATTGGGTGATTCGAGAGCTGAAAAGTTGATTTTATAAAAATGAATGATGAAAAATGTTCCCCGGATATCGTCAGTCATGATGCATTGTCTGCAAACACCGAACCTATTGAAATGGGRGGGAGTTCAAAAGTATTACAGTAATCCTTGTCATTGTAACAAGAAGACTAAGTTTCTGGCGAAAAGTACACCTACTTCTTTGTGTTTCCAGTCGAATCCTTATCCCCAGACTGTCTCTTGATTCCTCGTCGTTTCATCAAAGGTGCAGCTGCCACATCAAGCAAGTGGAATCCGTCCCGGTTTGCATGAAGGAAGGCGCGCAGGGTCTCATTGAAGGTTTCATCTGAAGATTATCATTAAAAAGTTGAGAGATCTAAAAAATGAGGTACCAGCAGAAGAAGGAAGGATGCTTGGGGTTTGAAGTGGTGTATCCATAGCAGCAGACGACTTTAACCACATGTGAGCAGTCAGCTCTTGCATCGAAAGTCGTTTCTTTGGGTCGACGGTTAGAAGACCAGTGATCAGATTCTTAGCGTCTGATGAGACATTTGTCCAGGCATCACCTTCAAATGAGAATTCAGCTCGACAGATTCTTTGCATAATTTCAGTGGCGGATTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>492 266 232 10</canonical_bands>
                <polymorphic_bands>724 266 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACGTCATCTCCATTTCTTG</pcr_primer_p1>
		<pcr_primer_p2>GGAAACACAAAGAAGTAGGTGTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GACGTCATCTCCATTTCTTGCTCTTCCGGAAGACACTCGAATTGGGTGATTCGAGAGCTGAAAAGTTGATTTTATAAAAATGAATGATGAAAAATGTTCCCCGGATATCGTCAGTCATGATGCATTGTCTGCAAACACCGAACCTATTGAAATGGGCGGGAGTTCAAAAGTATTACAGTAATCCTTGTCATTGTAACAAGAAGACTAAGTTTCTGGCGAAAAGTACACCTACTTCTTTGTGTTTCC</canonical_amplicon>
		<polymorphic_amplicon>GACGTCATCTCCATTTCTTGCTCTTCCGGAAGACACTCGAATTGGGTGATTCGAGAGCTGAAAAGTTGATTTTATAAAAATGAATGATGAAAAATGTTCCCCGGATATCGTCAGTCATGATGCATTGTCTGCAAACACCGAACCTATTGAAATGGGRGGGAGTTCAAAAGTATTACAGTAATCCTTGTCATTGTAACAAGAAGACTAAGTTTCTGGCGAAAAGTACACCTACTTCTTTGTGTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36854</snp_id>
        <super_contig>c011500760.Contig1</super_contig>
        <contig_pos>8305</contig_pos>
        <strand>+</strand>
        <context>AAACACTTTT[A/G]TCATTCATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCTCTTTTTTCCAGAAACTGTGAGTTTCAGGAGAGAAAAACACTTTT</left_flank>
        <right_flank>TCATTCATTTCATCTCTTCTTTTTTCTTCCAACATATTATGTAGCAGATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGGATCCCTTCTCCGTGCTCCCCTCTCTGGGGCCCAGAGAAAGCAATAACTGATTCTTCCCTCTGATTCCTTCTTTCAAATAAAAAAACACTGGCTAGTAGAAATTTCAGTGTCATTTAGGATTTTTCTTTTTTCATAAATATTTAGTGAATTTCACACAAGAATGTCAAGAACAATCTCAAAATCCCGTCCAATCTGATAAAGTCTATTCCAAAGTTTTGCCGTCTTTTCGATGACAGTAATCTTGTGATCCTGTAGAATATTTCTCAAATTGGAATCCCGAAAAAAAAATAACAAGGACAATTCTCAGAAAAAGAACCAACTTTTGTTTTCATTCTTTTTCATATTTTCATCATCATCTTTTTTCTCTTTTTTCCAGAAACTGTGAGTTTCAGGAGAGAAAAACACTTTTGTCATTCATTTCATCTCTTCTTTTTTCTTCCAACATATTATGTAGCAGATCCGTTGGCCACCAGAAGAACTTTTTTTCAGAAATTTATTCATTTGAGAACCTTTTTTAGGAATCCAAATTCAATGTTTTCTTGTACCGCTTTCTGTGAGTGTCGGAAATAATAGAAAATCGAATATTTGAGTTTGACAATTTTCGAATAAAAAAAATGTTTCATAGTTTGCATAATCGAGTATAAATCATGATCCTTTTGCTCCGTAGGCTGCATATGCAATAACAAAATTCATTTTGAAAGTTTCAAAATGGTTATCATTATTGAAAAAAGACCTGGCTCATTAAAAGTGAAAATTCCTAAACGAAATATTCGAAAATATTGGAAAGTCGAAAAGTTGCATTAATTGTGTATTCAGAAACCCAAATGTCGTAAGAAGAGGATATTCTGCGTTCAATTTCAAAAAGTTCCTTTTTGCTCACTGCTGGGTTCGAGTAGGCTTTTAGAGTCAT</canonical>
            <polymorphic>CCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGACCCAGGGATCCCTTCTCCGTGCTCCCCTCTCTGGGGCCCAGAGAAAGCAATAACTGATTCTTCCCTCTGATTCCTTCTTTCAAATAAAAAAACACTGGCTAGTAGAAATTTCAGTGTCATTTAGGATTTTTCTTTTTTCATAAATATTTAGTGAATTTCACACAAGAATGTCAAGAACAATCTCAAAATCCCGTCCAATCTGATAAAGTCTATTCCAAAGTTTTGCCGTCTTTTCGATGACAGTAATCTTGTGATCCTGTAGAATATTTCTCAAATTGGAATCCCGAAAAAAAAATAACAAGGACAATTCTCAGAAAAAGAACCAACTTTTGTTTTCATTCTTTTTCATATTTTCATCATCATCTTTTTTCTCTTTTTTCCAGAAACTGTGAGTTTCAGGAGAGAAAAACACTTTTRTCATTCATTTCATCTCTTCTTTTTTCTTCCAACATATTATGTAGCAGATCCGTTGGCCACCAGAAGAACTTTTTTTCAGAAATTTATTCATTTGAGAACCTTTTTTAGGAATCCAAATTCAATGTTTTCTTGTACCGCTTTCTGTGAGTGTCGGAAATAATAGAAAATCGAATATTTGAGTTTGACAATTTTCGAATAAAAAAAATGTTTCATAGTTTGCATAATCGAGTATAAATCATGATCCTTTTGCTCCGTAGGCTGCATATGCAATAACAAAATTCATTTTGAAAGTTTCAAAATGGTTATCATTATTGAAAAAAGACCTGGCTCATTAAAAGTGAAAATTCCTAAACGAAATATTCGAAAATATTGGAAAGTCGAAAAGTTGCATTAATTGTGTATTCAGAAACCCAAATGTCGTAAGAAGAGGATATTCTGCGTTCAATTTCAAAAAGTTCCTTTTTGCTCACTGCTGGGTTCGAGTAGGCTTTTAGAGTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCTCAGAAAAAGAACCAACT</pcr_primer_p1>
		<pcr_primer_p2>GGTACAAGAAAACATTGAATTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATTCTCAGAAAAAGAACCAACTTTTGTTTTCATTCTTTTTCATATTTTCATCATCATCTTTTTTCTCTTTTTTCCAGAAACTGTGAGTTTCAGGAGAGAAAAACACTTTTGTCATTCATTTCATCTCTTCTTTTTTCTTCCAACATATTATGTAGCAGATCCGTTGGCCACCAGAAGAACTTTTTTTCAGAAATTTATTCATTTGAGAACCTTTTTTAGGAATCCAAATTCAATGTTTTCTTGTACC</canonical_amplicon>
		<polymorphic_amplicon>AATTCTCAGAAAAAGAACCAACTTTTGTTTTCATTCTTTTTCATATTTTCATCATCATCTTTTTTCTCTTTTTTCCAGAAACTGTGAGTTTCAGGAGAGAAAAACACTTTTRTCATTCATTTCATCTCTTCTTTTTTCTTCCAACATATTATGTAGCAGATCCGTTGGCCACCAGAAGAACTTTTTTTCAGAAATTTATTCATTTGAGAACCTTTTTTAGGAATCCAAATTCAATGTTTTCTTGTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36855</snp_id>
        <super_contig>c011500760.Contig1</super_contig>
        <contig_pos>8453</contig_pos>
        <strand>+</strand>
        <context>CTTTCTGTGA[G/T]TGTCGGAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACCTTTTTTAGGAATCCAAATTCAATGTTTTCTTGTACCGCTTTCTGTGA</left_flank>
        <right_flank>TGTCGGAAATAATAGAAAATCGAATATTTGAGTTTGACAATTTTCGAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGATTCCTTCTTTCAAATAAAAAAACACTGGCTAGTAGAAATTTCAGTGTCATTTAGGATTTTTCTTTTTTCATAAATATTTAGTGAATTTCACACAAGAATGTCAAGAACAATCTCAAAATCCCGTCCAATCTGATAAAGTCTATTCCAAAGTTTTGCCGTCTTTTCGATGACAGTAATCTTGTGATCCTGTAGAATATTTCTCAAATTGGAATCCCGAAAAAAAAATAACAAGGACAATTCTCAGAAAAAGAACCAACTTTTGTTTTCATTCTTTTTCATATTTTCATCATCATCTTTTTTCTCTTTTTTCCAGAAACTGTGAGTTTCAGGAGAGAAAAACACTTTTGTCATTCATTTCATCTCTTCTTTTTTCTTCCAACATATTATGTAGCAGATCCGTTGGCCACCAGAAGAACTTTTTTTCAGAAATTTATTCATTTGAGAACCTTTTTTAGGAATCCAAATTCAATGTTTTCTTGTACCGCTTTCTGTGAGTGTCGGAAATAATAGAAAATCGAATATTTGAGTTTGACAATTTTCGAATAAAAAAAATGTTTCATAGTTTGCATAATCGAGTATAAATCATGATCCTTTTGCTCCGTAGGCTGCATATGCAATAACAAAATTCATTTTGAAAGTTTCAAAATGGTTATCATTATTGAAAAAAGACCTGGCTCATTAAAAGTGAAAATTCCTAAACGAAATATTCGAAAATATTGGAAAGTCGAAAAGTTGCATTAATTGTGTATTCAGAAACCCAAATGTCGTAAGAAGAGGATATTCTGCGTTCAATTTCAAAAAGTTCCTTTTTGCTCACTGCTGGGTTCGAGTAGGCTTTTAGAGTCATATATTCTTCTTGAAACTTCATCAAAAAATTCATAAATGTACTTTCAAGAATAAAAACAGACGATACTTTTTTAAAAATGCGAAATTATGATCCTACCACGGTGAATGTTTTAATACAACATCACCCTAAACAATTAGAGCTCATTTAT</canonical>
            <polymorphic>TCTGATTCCTTCTTTCAAATAAAAAAACACTGGCTAGTAGAAATTTCAGTGTCATTTAGGATTTTTCTTTTTTCATAAATATTTAGTGAATTTCACACAAGAATGTCAAGAACAATCTCAAAATCCCGTCCAATCTGATAAAGTCTATTCCAAAGTTTTGCCGTCTTTTCGATGACAGTAATCTTGTGATCCTGTAGAATATTTCTCAAATTGGAATCCCGAAAAAAAAATAACAAGGACAATTCTCAGAAAAAGAACCAACTTTTGTTTTCATTCTTTTTCATATTTTCATCATCATCTTTTTTCTCTTTTTTCCAGAAACTGTGAGTTTCAGGAGAGAAAAACACTTTTGTCATTCATTTCATCTCTTCTTTTTTCTTCCAACATATTATGTAGCAGATCCGTTGGCCACCAGAAGAACTTTTTTTCAGAAATTTATTCATTTGAGAACCTTTTTTAGGAATCCAAATTCAATGTTTTCTTGTACCGCTTTCTGTGAKTGTCGGAAATAATAGAAAATCGAATATTTGAGTTTGACAATTTTCGAATAAAAAAAATGTTTCATAGTTTGCATAATCGAGTATAAATCATGATCCTTTTGCTCCGTAGGCTGCATATGCAATAACAAAATTCATTTTGAAAGTTTCAAAATGGTTATCATTATTGAAAAAAGACCTGGCTCATTAAAAGTGAAAATTCCTAAACGAAATATTCGAAAATATTGGAAAGTCGAAAAGTTGCATTAATTGTGTATTCAGAAACCCAAATGTCGTAAGAAGAGGATATTCTGCGTTCAATTTCAAAAAGTTCCTTTTTGCTCACTGCTGGGTTCGAGTAGGCTTTTAGAGTCATATATTCTTCTTGAAACTTCATCAAAAAATTCATAAATGTACTTTCAAGAATAAAAACAGACGATACTTTTTTAAAAATGCGAAATTATGATCCTACCACGGTGAATGTTTTAATACAACATCACCCTAAACAATTAGAGCTCATTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>190 138 129 91 87 70 65 59 37 29 25 22 20 20 7 5 4 2</canonical_bands>
                <polymorphic_bands>194 138 129 91 87 70 65 59 37 29 25 22 20 20 7 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATTCATTTCATCTCTTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>GCAAAAGGATCATGATTTATACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCATTCATTTCATCTCTTCTTTTTTCTTCCAACATATTATGTAGCAGATCCGTTGGCCACCAGAAGAACTTTTTTTCAGAAATTTATTCATTTGAGAACCTTTTTTAGGAATCCAAATTCAATGTTTTCTTGTACCGCTTTCTGTGAGTGTCGGAAATAATAGAAAATCGAATATTTGAGTTTGACAATTTTCGAATAAAAAAAATGTTTCATAGTTTGCATAATCGAGTATAAATCATGATCCTTTTGC</canonical_amplicon>
		<polymorphic_amplicon>TCATTCATTTCATCTCTTCTTTTTTCTTCCAACATATTATGTAGCAGATCCGTTGGCCACCAGAAGAACTTTTTTTCAGAAATTTATTCATTTGAGAACCTTTTTTAGGAATCCAAATTCAATGTTTTCTTGTACCGCTTTCTGTGAKTGTCGGAAATAATAGAAAATCGAATATTTGAGTTTGACAATTTTCGAATAAAAAAAATGTTTCATAGTTTGCATAATCGAGTATAAATCATGATCCTTTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36856</snp_id>
        <super_contig>c011600929.Contig1</super_contig>
        <contig_pos>7026</contig_pos>
        <strand>+</strand>
        <context>CAAATTACAT[C/G]GAAAATGCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTTGGGTTTTTTGAAGTGAAAATTTTGATTATTCAGCACAAATTACAT</left_flank>
        <right_flank>GAAAATGCATATTTTTGCTCGGTTTTCTAGGAAATTCGTTGAGATTTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAGAGCACGGCGTCGAATCGATTTGAACAGAGCTGGTCCGGAAGAAGGAGAAGAAAAAGAAGGGGGAAATGCAGACAACACAAAAACACATGAATATTGGATTTTCCCCAGGAAACACTAGCAATTTGTACAAAAACAAGGGGAAAAACAGAGAAATTTATTTTTTTTTTCTTCTGAAAAATTTTTTTCTTGCAAATTTCAGCATTTTCCATGTCTTTTTACGCCTGAAACTACTGAAATCCTATTTTAAAAACGCGTTTTTTCTCTGTAAGAAAACCTCTTTTTCAAAAAACCGCGCAAAAACATCGCAAACGCGCGCCGCCGCACACCAGTTAGATGTGCAGGTTATACGGTAGGCGTCGGTTTTAGGCCTATTTTTCGCGTTTTTTCCATCAATTTTCGGCAATTTTTACCTAAATTTTGAGGAATTTACTCATCTTTTCTGCTTTTTTGGGTTTTTTGAAGTGAAAATTTTGATTATTCAGCACAAATTACATGGAAAATGCATATTTTTGCTCGGTTTTCTAGGAAATTCGTTGAGATTTTTGCTAAAATCCTGTTTTTCAGGTTTTAGGGTTTTTTCGTATATTTGCTGAAATTTCGATTTTTTTTCTTCTAAATACTCACAAAAATACCTCTTTTTGCTCGATTTTCCCTCCTAAAAATCGCATTTTTTCAGAACTAGGGTTTACAAGTCCAGCCATGGTCTTCGTCAAAACACTCAACAGAACCTTGTACCTCGAGGTCGCCGCCAACGAGGATGTCTTGAGCATCAAGCAAAAGATCGAGGCTGCCGAGGGTATCCCATCCGCTGAGCAGAGACTCGTCTTCGCCGGTTCGTTTCGTTTCACGCAGAATCTCGAGAAGCACCCCACCTAGGTTGGGCACTTTGAGGACAGACCCTGCTAGACACATTCTTGATTTTTACCTGTTAAGGACGTCAGCTCGAGGATAGCGACTGCGGACTCGACGCCGAGGCCACCATCTACGTCAACCTT</canonical>
            <polymorphic>AAGAGAGCACGGCGTCGAATCGATTTGAACAGAGCTGGTCCGGAAGAAGGAGAAGAAAAAGAAGGGGGAAATGCAGACAACACAAAAACACATGAATATTGGATTTTCCCCAGGAAACACTAGCAATTTGTACAAAAACAAGGGGAAAAACAGAGAAATTTATTTTTTTTTTCTTCTGAAAAATTTTTTTCTTGCAAATTTCAGCATTTTCCATGTCTTTTTACGCCTGAAACTACTGAAATCCTATTTTAAAAACGCGTTTTTTCTCTGTAAGAAAACCTCTTTTTCAAAAAACCGCGCAAAAACATCGCAAACGCGCGCCGCCGCACACCAGTTAGATGTGCAGGTTATACGGTAGGCGTCGGTTTTAGGCCTATTTTTCGCGTTTTTTCCATCAATTTTCGGCAATTTTTACCTAAATTTTGAGGAATTTACTCATCTTTTCTGCTTTTTTGGGTTTTTTGAAGTGAAAATTTTGATTATTCAGCACAAATTACATSGAAAATGCATATTTTTGCTCGGTTTTCTAGGAAATTCGTTGAGATTTTTGCTAAAATCCTGTTTTTCAGGTTTTAGGGTTTTTTCGTATATTTGCTGAAATTTCGATTTTTTTTCTTCTAAATACTCACAAAAATACCTCTTTTTGCTCGATTTTCCCTCCTAAAAATCGCATTTTTTCAGAACTAGGGTTTACAAGTCCAGCCATGGTCTTCGTCAAAACACTCAACAGAACCTTGTACCTCGAGGTCGCCGCCAACGAGGATGTCTTGAGCATCAAGCAAAAGATCGAGGCTGCCGAGGGTATCCCATCCGCTGAGCAGAGACTCGTCTTCGCCGGTTCGTTTCGTTTCACGCAGAATCTCGAGAAGCACCCCACCTAGGTTGGGCACTTTGAGGACAGACCCTGCTAGACACATTCTTGATTTTTACCTGTTAAGGACGTCAGCTCGAGGATAGCGACTGCGGACTCGACGCCGAGGCCACCATCTACGTCAACCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>296 285 207 121 91</canonical_bands>
                <polymorphic_bands>492 296 121 91</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCGGTTTTAGGCCTATTTT</pcr_primer_p1>
		<pcr_primer_p2>AATCGAAATTTCAGCAAATATAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTCGGTTTTAGGCCTATTTTTCGCGTTTTTTCCATCAATTTTCGGCAATTTTTACCTAAATTTTGAGGAATTTACTCATCTTTTCTGCTTTTTTGGGTTTTTTGAAGTGAAAATTTTGATTATTCAGCACAAATTACATGGAAAATGCATATTTTTGCTCGGTTTTCTAGGAAATTCGTTGAGATTTTTGCTAAAATCCTGTTTTTCAGGTTTTAGGGTTTTTTCGTATATTTGCTGAAATTTCGATT</canonical_amplicon>
		<polymorphic_amplicon>GTCGGTTTTAGGCCTATTTTTCGCGTTTTTTCCATCAATTTTCGGCAATTTTTACCTAAATTTTGAGGAATTTACTCATCTTTTCTGCTTTTTTGGGTTTTTTGAAGTGAAAATTTTGATTATTCAGCACAAATTACATSGAAAATGCATATTTTTGCTCGGTTTTCTAGGAAATTCGTTGAGATTTTTGCTAAAATCCTGTTTTTCAGGTTTTAGGGTTTTTTCGTATATTTGCTGAAATTTCGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36857</snp_id>
        <super_contig>c011600929.Contig1</super_contig>
        <contig_pos>7262</contig_pos>
        <strand>+</strand>
        <context>AACAGAACCT[G/T]GTACCTCGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGGGTTTACAAGTCCAGCCATGGTCTTCGTCAAAACACTCAACAGAACCT</left_flank>
        <right_flank>GTACCTCGAGGTCGCCGCCAACGAGGATGTCTTGAGCATCAAGCAAAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAATCCTATTTTAAAAACGCGTTTTTTCTCTGTAAGAAAACCTCTTTTTCAAAAAACCGCGCAAAAACATCGCAAACGCGCGCCGCCGCACACCAGTTAGATGTGCAGGTTATACGGTAGGCGTCGGTTTTAGGCCTATTTTTCGCGTTTTTTCCATCAATTTTCGGCAATTTTTACCTAAATTTTGAGGAATTTACTCATCTTTTCTGCTTTTTTGGGTTTTTTGAAGTGAAAATTTTGATTATTCAGCACAAATTACATGGAAAATGCATATTTTTGCTCGGTTTTCTAGGAAATTCGTTGAGATTTTTGCTAAAATCCTGTTTTTCAGGTTTTAGGGTTTTTTCGTATATTTGCTGAAATTTCGATTTTTTTTCTTCTAAATACTCACAAAAATACCTCTTTTTGCTCGATTTTCCCTCCTAAAAATCGCATTTTTTCAGAACTAGGGTTTACAAGTCCAGCCATGGTCTTCGTCAAAACACTCAACAGAACCTTGTACCTCGAGGTCGCCGCCAACGAGGATGTCTTGAGCATCAAGCAAAAGATCGAGGCTGCCGAGGGTATCCCATCCGCTGAGCAGAGACTCGTCTTCGCCGGTTCGTTTCGTTTCACGCAGAATCTCGAGAAGCACCCCACCTAGGTTGGGCACTTTGAGGACAGACCCTGCTAGACACATTCTTGATTTTTACCTGTTAAGGACGTCAGCTCGAGGATAGCGACTGCGGACTCGACGCCGAGGCCACCATCTACGTCAACCTTGAGCTTCTCGGAGGAGCCAAGAAGAGAAAGAAGAAGGTCTACACCACTCCAAAGAAGAACAAGAGAAAGCCAAAGAAGGTCAAGCTCGCTGTCCTCAAGTACTACAAGGGGAGCATAGTACCTGTGCAACAGGTTCTAGAGAACTGGGCTATCGACGGTGATGAAGAATTTTATTGATATGGTGTCAGGACCTCTGAGAGTTCCGTGACTGAGGATTAGAGTTCCTGAGTCGATTT</canonical>
            <polymorphic>TGAAATCCTATTTTAAAAACGCGTTTTTTCTCTGTAAGAAAACCTCTTTTTCAAAAAACCGCGCAAAAACATCGCAAACGCGCGCCGCCGCACACCAGTTAGATGTGCAGGTTATACGGTAGGCGTCGGTTTTAGGCCTATTTTTCGCGTTTTTTCCATCAATTTTCGGCAATTTTTACCTAAATTTTGAGGAATTTACTCATCTTTTCTGCTTTTTTGGGTTTTTTGAAGTGAAAATTTTGATTATTCAGCACAAATTACATGGAAAATGCATATTTTTGCTCGGTTTTCTAGGAAATTCGTTGAGATTTTTGCTAAAATCCTGTTTTTCAGGTTTTAGGGTTTTTTCGTATATTTGCTGAAATTTCGATTTTTTTTCTTCTAAATACTCACAAAAATACCTCTTTTTGCTCGATTTTCCCTCCTAAAAATCGCATTTTTTCAGAACTAGGGTTTACAAGTCCAGCCATGGTCTTCGTCAAAACACTCAACAGAACCTKGTACCTCGAGGTCGCCGCCAACGAGGATGTCTTGAGCATCAAGCAAAAGATCGAGGCTGCCGAGGGTATCCCATCCGCTGAGCAGAGACTCGTCTTCGCCGGTTCGTTTCGTTTCACGCAGAATCTCGAGAAGCACCCCACCTAGGTTGGGCACTTTGAGGACAGACCCTGCTAGACACATTCTTGATTTTTACCTGTTAAGGACGTCAGCTCGAGGATAGCGACTGCGGACTCGACGCCGAGGCCACCATCTACGTCAACCTTGAGCTTCTCGGAGGAGCCAAGAAGAGAAAGAAGAAGGTCTACACCACTCCAAAGAAGAACAAGAGAAAGCCAAAGAAGGTCAAGCTCGCTGTCCTCAAGTACTACAAGGGGAGCATAGTACCTGTGCAACAGGTTCTAGAGAACTGGGCTATCGACGGTGATGAAGAATTTTATTGATATGGTGTCAGGACCTCTGAGAGTTCCGTGACTGAGGATTAGAGTTCCTGAGTCGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAACTAGGGTTTACAAGTCCA</pcr_primer_p1>
		<pcr_primer_p2>CAGGTAAAAATCAAGAATGTGTC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AGAACTAGGGTTTACAAGTCCAGCCATGGTCTTCGTCAAAACACTCAACAGAACCTTGTACCTCGAGGTCGCCGCCAACGAGGATGTCTTGAGCATCAAGCAAAAGATCGAGGCTGCCGAGGGTATCCCATCCGCTGAGCAGAGACTCGTCTTCGCCGGTTCGTTTCGTTTCACGCAGAATCTCGAGAAGCACCCCACCTAGGTTGGGCACTTTGAGGACAGACCCTGCTAGACACATTCTTGATTTTTACCTG</canonical_amplicon>
		<polymorphic_amplicon>AGAACTAGGGTTTACAAGTCCAGCCATGGTCTTCGTCAAAACACTCAACAGAACCTKGTACCTCGAGGTCGCCGCCAACGAGGATGTCTTGAGCATCAAGCAAAAGATCGAGGCTGCCGAGGGTATCCCATCCGCTGAGCAGAGACTCGTCTTCGCCGGTTCGTTTCGTTTCACGCAGAATCTCGAGAAGCACCCCACCTAGGTTGGGCACTTTGAGGACAGACCCTGCTAGACACATTCTTGATTTTTACCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36858</snp_id>
        <super_contig>c011600929.Contig1</super_contig>
        <contig_pos>8680</contig_pos>
        <strand>+</strand>
        <context>TTCTCGAAAA[A/T]TCACGGGCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAA</left_flank>
        <right_flank>TCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAACGGAGAATAATTACTTCTCGGATTAATATTAGCTGAAAATGTTCTGAACAAGAAAAAGTAGTCTGGAAATCAGGATTTCAGTAGAAAATAAATTTTATCAGTGTCGTCCTCAACTTGGCACTATGCCGATGAAAATTGGCCTAAACTTTTGCAGCAGCAAGTGCGCTCCACCGGACAAAACATATTTTCGCCTTTATTCCTCGTTTTTCGTCTTTTTTTCTCCCAAAAACCTCCATTTTCGCCTATTTCTAGCTGTTTCAACCCAAAAACCTCTGATTTAAACGAATTTCAGGGTAAAAAATATAACAAATCATGGGAAAGAAGGTTAAAATCGGAAAACAGCGTCGTGATAAGTATTACAAGCTCGCCAAAGAAGCTGGTAAGTCGATTTTCCGGCTTAAAGTCCTTAAAAAATCGATTTTCTTCCAGGATACCGATCACGTGCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTA</canonical>
            <polymorphic>TTGAAACGGAGAATAATTACTTCTCGGATTAATATTAGCTGAAAATGTTCTGAACAAGAAAAAGTAGTCTGGAAATCAGGATTTCAGTAGAAAATAAATTTTATCAGTGTCGTCCTCAACTTGGCACTATGCCGATGAAAATTGGCCTAAACTTTTGCAGCAGCAAGTGCGCTCCACCGGACAAAACATATTTTCGCCTTTATTCCTCGTTTTTCGTCTTTTTTTCTCCCAAAAACCTCCATTTTCGCCTATTTCTAGCTGTTTCAACCCAAAAACCTCTGATTTAAACGAATTTCAGGGTAAAAAATATAACAAATCATGGGAAAGAAGGTTAAAATCGGAAAACAGCGTCGTGATAAGTATTACAAGCTCGCCAAAGAAGCTGGTAAGTCGATTTTCCGGCTTAAAGTCCTTAAAAAATCGATTTTCTTCCAGGATACCGATCACGTGCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAWTCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGATTTTCTTCCAGGATAC</pcr_primer_p1>
		<pcr_primer_p2>GTTTTGAACCGACTTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>358</pcr_amplicon_size>
		<canonical_amplicon>ATCGATTTTCTTCCAGGATACCGATCACGTGCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAAC</canonical_amplicon>
		<polymorphic_amplicon>ATCGATTTTCTTCCAGGATACCGATCACGTGCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAWTCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36859</snp_id>
        <super_contig>c011600929.Contig1</super_contig>
        <contig_pos>8857</contig_pos>
        <strand>+</strand>
        <context>GGGAAATTGA[A/G]CCTAAAWWAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGA</left_flank>
        <right_flank>CCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGACAAAACATATTTTCGCCTTTATTCCTCGTTTTTCGTCTTTTTTTCTCCCAAAAACCTCCATTTTCGCCTATTTCTAGCTGTTTCAACCCAAAAACCTCTGATTTAAACGAATTTCAGGGTAAAAAATATAACAAATCATGGGAAAGAAGGTTAAAATCGGAAAACAGCGTCGTGATAAGTATTACAAGCTCGCCAAAGAAGCTGGTAAGTCGATTTTCCGGCTTAAAGTCCTTAAAAAATCGATTTTCTTCCAGGATACCGATCACGTGCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCCTAATTTCCTATCTTCCAGGAGTGGATTTGGCGCCAATCAAGCCCATCA</canonical>
            <polymorphic>CGGACAAAACATATTTTCGCCTTTATTCCTCGTTTTTCGTCTTTTTTTCTCCCAAAAACCTCCATTTTCGCCTATTTCTAGCTGTTTCAACCCAAAAACCTCTGATTTAAACGAATTTCAGGGTAAAAAATATAACAAATCATGGGAAAGAAGGTTAAAATCGGAAAACAGCGTCGTGATAAGTATTACAAGCTCGCCAAAGAAGCTGGTAAGTCGATTTTCCGGCTTAAAGTCCTTAAAAAATCGATTTTCTTCCAGGATACCGATCACGTGCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGARCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCCTAATTTCCTATCTTCCAGGAGTGGATTTGGCGCCAATCAAGCCCATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>279 264 139 105 94 70 49</canonical_bands>
                <polymorphic_bands>373 264 139 105 70 49</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCCAGTTTGATCGTTGGTA</pcr_primer_p1>
		<pcr_primer_p2>AGTCGATTTTTGACCATTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>CTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACT</canonical_amplicon>
		<polymorphic_amplicon>CTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGARCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36860</snp_id>
        <super_contig>c011600929.Contig1</super_contig>
        <contig_pos>8865</contig_pos>
        <strand>+</strand>
        <context>GARCCTAAAW[A/T]AGTCTAWWTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAA</left_flank>
        <right_flank>AGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATATTTTCGCCTTTATTCCTCGTTTTTCGTCTTTTTTTCTCCCAAAAACCTCCATTTTCGCCTATTTCTAGCTGTTTCAACCCAAAAACCTCTGATTTAAACGAATTTCAGGGTAAAAAATATAACAAATCATGGGAAAGAAGGTTAAAATCGGAAAACAGCGTCGTGATAAGTATTACAAGCTCGCCAAAGAAGCTGGTAAGTCGATTTTCCGGCTTAAAGTCCTTAAAAAATCGATTTTCTTCCAGGATACCGATCACGTGCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCCTAATTTCCTATCTTCCAGGAGTGGATTTGGCGCCAATCAAGCCCATCAAGAACTGT</canonical>
            <polymorphic>ACATATTTTCGCCTTTATTCCTCGTTTTTCGTCTTTTTTTCTCCCAAAAACCTCCATTTTCGCCTATTTCTAGCTGTTTCAACCCAAAAACCTCTGATTTAAACGAATTTCAGGGTAAAAAATATAACAAATCATGGGAAAGAAGGTTAAAATCGGAAAACAGCGTCGTGATAAGTATTACAAGCTCGCCAAAGAAGCTGGTAAGTCGATTTTCCGGCTTAAAGTCCTTAAAAAATCGATTTTCTTCCAGGATACCGATCACGTGCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAAWAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCCTAATTTCCTATCTTCCAGGAGTGGATTTGGCGCCAATCAAGCCCATCAAGAACTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>497 327 174 2</canonical_bands>
                <polymorphic_bands>671 327 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCCAGTTTGATCGTTGGTA</pcr_primer_p1>
		<pcr_primer_p2>AGTCGATTTTTGACCATTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>CTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACT</canonical_amplicon>
		<polymorphic_amplicon>CTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAAWAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36861</snp_id>
        <super_contig>c011600929.Contig1</super_contig>
        <contig_pos>8873</contig_pos>
        <strand>+</strand>
        <context>AWWAGTCTAW[A/T]TCGATAGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTAT</left_flank>
        <right_flank>TCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGCCTTTATTCCTCGTTTTTCGTCTTTTTTTCTCCCAAAAACCTCCATTTTCGCCTATTTCTAGCTGTTTCAACCCAAAAACCTCTGATTTAAACGAATTTCAGGGTAAAAAATATAACAAATCATGGGAAAGAAGGTTAAAATCGGAAAACAGCGTCGTGATAAGTATTACAAGCTCGCCAAAGAAGCTGGTAAGTCGATTTTCCGGCTTAAAGTCCTTAAAAAATCGATTTTCTTCCAGGATACCGATCACGTGCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCCTAATTTCCTATCTTCCAGGAGTGGATTTGGCGCCAATCAAGCCCATCAAGAACTGTATCGCTCT</canonical>
            <polymorphic>TCGCCTTTATTCCTCGTTTTTCGTCTTTTTTTCTCCCAAAAACCTCCATTTTCGCCTATTTCTAGCTGTTTCAACCCAAAAACCTCTGATTTAAACGAATTTCAGGGTAAAAAATATAACAAATCATGGGAAAGAAGGTTAAAATCGGAAAACAGCGTCGTGATAAGTATTACAAGCTCGCCAAAGAAGCTGGTAAGTCGATTTTCCGGCTTAAAGTCCTTAAAAAATCGATTTTCTTCCAGGATACCGATCACGTGCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATWTCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCCTAATTTCCTATCTTCCAGGAGTGGATTTGGCGCCAATCAAGCCCATCAAGAACTGTATCGCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>499 273 228</canonical_bands>
                <polymorphic_bands>772 228</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCCAGTTTGATCGTTGGTA</pcr_primer_p1>
		<pcr_primer_p2>AGTCGATTTTTGACCATTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>CTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACT</canonical_amplicon>
		<polymorphic_amplicon>CTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATWTCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36862</snp_id>
        <super_contig>c011600929.Contig1</super_contig>
        <contig_pos>8889</contig_pos>
        <strand>+</strand>
        <context>AGAATCGCGT[A/G]AAAGTCGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGT</left_flank>
        <right_flank>AAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCGTCTTTTTTTCTCCCAAAAACCTCCATTTTCGCCTATTTCTAGCTGTTTCAACCCAAAAACCTCTGATTTAAACGAATTTCAGGGTAAAAAATATAACAAATCATGGGAAAGAAGGTTAAAATCGGAAAACAGCGTCGTGATAAGTATTACAAGCTCGCCAAAGAAGCTGGTAAGTCGATTTTCCGGCTTAAAGTCCTTAAAAAATCGATTTTCTTCCAGGATACCGATCACGTGCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCCTAATTTCCTATCTTCCAGGAGTGGATTTGGCGCCAATCAAGCCCATCAAGAACTGTATCGCTCTTCAAGGAGACATCACC</canonical>
            <polymorphic>TTTTTCGTCTTTTTTTCTCCCAAAAACCTCCATTTTCGCCTATTTCTAGCTGTTTCAACCCAAAAACCTCTGATTTAAACGAATTTCAGGGTAAAAAATATAACAAATCATGGGAAAGAAGGTTAAAATCGGAAAACAGCGTCGTGATAAGTATTACAAGCTCGCCAAAGAAGCTGGTAAGTCGATTTTCCGGCTTAAAGTCCTTAAAAAATCGATTTTCTTCCAGGATACCGATCACGTGCCGCATTCAAGTTGGTCCAATTGAACAAACGCTTCGAGTTTCTCGAAAAATCACGGGCCACCGTTGATTTGTGCGCAGCTCCCGGAGGATGGATGCAAGTCGCCTCGCAGTTCATGCCCGTCTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTRAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACTGGAATGGTTCGTTTTTGGTCTGGAATGATTTTTAACGATTCCAAGACGACCAGACCCGAAAAAAGCGATTTTCAGCTCAAAAATTGGTTAAAATCGTTTTTTTGGTCTGGAATGATTTTTAATGATTCTGAGACGAAAAAATTCGGTTTTAGATCTTAAAAATCGGTTAAGATTGGTCTTTTTCGACCTGAAGTGCTACTGATCGCCTCAGAACGATAAAATGACTCAGAAATTCGATTTCAGGCCTGAAACTATTGATTTTTCAAAGTTTTTGACCTCAAAATCGCTCAAAGCTGGCTATTTTTGATCCCCAGACTCTAAAAATCCTAATTTCCTATCTTCCAGGAGTGGATTTGGCGCCAATCAAGCCCATCAAGAACTGTATCGCTCTTCAAGGAGACATCACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCAGTTTGATCGTTGGTA</pcr_primer_p1>
		<pcr_primer_p2>AGTCGATTTTTGACCATTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>CTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTAAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACT</canonical_amplicon>
		<polymorphic_amplicon>CTCCAGTTTGATCGTTGGTACGCGGAAAATGCAAAAAATTGGGAGGAATCCGCTGAAAAATGGGAAATTTCGACCTGAAAATTTTCTGGAACGGGGGGAAATTGATCCTAAAACAGTCTATATCGATAGAATCGCGTRAAAGTCGAAAAAATGTGAAAAAAAACCCGAATTTTCTCGGTTTAAAGCCTGAAAAGTCGGTTCAAAACAGCTAAAAATGGTCAAAAATCGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36863</snp_id>
        <super_contig>c011600929.Contig1</super_contig>
        <contig_pos>38783</contig_pos>
        <strand></strand>
        <context>TATTTGTTTt[T/C]tgaaattcga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTTATTTTTTGCCATAACTTTCTTCATGAATGACTGGTCATATTTGTTTT</left_flank>
        <right_flank>TGAAATTCGAATTTCACTCGTTTCTAGCTTCACAATGAATATAAACACGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCTAGTCGTGTTTATACTCATTTTGAAGCACTCAACAAGGCCAATTCAAAATTTCAATTTTTTGAATTTTTTGGAACAAAACTGATCGAGTTACGGTAGATATAAAGGTTCTCAGACGTATCAATGGCTAGGCTACAAGGAAGAAAGGACGTGTAGATCAAAAAGTGTAAGGTGTAATTTGTAGTTTGTAGTGTGTGTTTTCGGTGGGAGAACAGAGAAAAGGGGTACATTGTACCTTTCCCTCTTCTTATTATTATCGTTCTTCTTCTTCTTTTTATTACACTGTGTACCCCCTTGTGTACTCTGATCCCCCGATTTTTTTCTCTGATTCTCTTCTCTCTCTCACTATCTCGTCTCATCAACGATTTCACGTCCCACTTGTCATCAGTATTTAGTGGATGTCAAAAAAAGAAAATTGTTTTTGTTTCCAAACATTTTTTTTCAAAACTTATTTTTTGCCATAACTTTCTTCATGAATGACTGGTCATATTTGTTTTTTGAAATTCGAATTTCACTCGTTTCTAGCTTCACAATGAATATAAACACGACTAGGCTCCGCCCACTTTGGTGTCAAAGACACACCGAGTCTCGTCTCTCTGCACTCTAGCCTCTCTTTTCTTCCAACCACAGTAACTTTTTTAGTTTTAGCTCAAATTTTATGAAAATAACAGTGTTCGATTTAACTTGTTTATCGCTTCAAAATGAGTAGAAATATGCCTATATTCGATAGAAATCGAATTTTTCGAAAAATTTTGGGTCCCACCACGACAATGTGAAGAATCAAATATTACCAAACGTAGTCGTGTATAGGCTCATTTTGAAGCTGTGAACATAACAAATAAAATGATTAATTTAAAGCAAACATTAACTGAAAACTAAGAAAGTTGCGGTCGTTTAAAAGGCTAGAGTGCAGAGAAACGAGACACCCTGCGTCTCTGATCCAAAGTGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTGAAAACGCGGGAA</canonical>
            <polymorphic>AGCCTAGTCGTGTTTATACTCATTTTGAAGCACTCAACAAGGCCAATTCAAAATTTCAATTTTTTGAATTTTTTGGAACAAAACTGATCGAGTTACGGTAGATATAAAGGTTCTCAGACGTATCAATGGCTAGGCTACAAGGAAGAAAGGACGTGTAGATCAAAAAGTGTAAGGTGTAATTTGTAGTTTGTAGTGTGTGTTTTCGGTGGGAGAACAGAGAAAAGGGGTACATTGTACCTTTCCCTCTTCTTATTATTATCGTTCTTCTTCTTCTTTTTATTACACTGTGTACCCCCTTGTGTACTCTGATCCCCCGATTTTTTTCTCTGATTCTCTTCTCTCTCTCACTATCTCGTCTCATCAACGATTTCACGTCCCACTTGTCATCAGTATTTAGTGGATGTCAAAAAAAGAAAATTGTTTTTGTTTCCAAACATTTTTTTTCAAAACTTATTTTTTGCCATAACTTTCTTCATGAATGACTGGTCATATTTGTTTTYTGAAATTCGAATTTCACTCGTTTCTAGCTTCACAATGAATATAAACACGACTAGGCTCCGCCCACTTTGGTGTCAAAGACACACCGAGTCTCGTCTCTCTGCACTCTAGCCTCTCTTTTCTTCCAACCACAGTAACTTTTTTAGTTTTAGCTCAAATTTTATGAAAATAACAGTGTTCGATTTAACTTGTTTATCGCTTCAAAATGAGTAGAAATATGCCTATATTCGATAGAAATCGAATTTTTCGAAAAATTTTGGGTCCCACCACGACAATGTGAAGAATCAAATATTACCAAACGTAGTCGTGTATAGGCTCATTTTGAAGCTGTGAACATAACAAATAAAATGATTAATTTAAAGCAAACATTAACTGAAAACTAAGAAAGTTGCGGTCGTTTAAAAGGCTAGAGTGCAGAGAAACGAGACACCCTGCGTCTCTGATCCAAAGTGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTGAAAACGCGGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGTATTTAGTGGATGTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTGAAGAAAACAGAGGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>702</pcr_amplicon_size>
		<canonical_amplicon>TCAGTATTTAGTGGATGTCAAAAAAAGAAAATTGTTTTTGTTTCCAAACATTTTTTTTCAAAACTTATTTTTTGCCATAACTTTCTTCATGAATGACTGGTCATATTTGTTTTTTGAAATTCGAATTTCACTCGTT</canonical_amplicon>
		<polymorphic_amplicon>TCAGTATTTAGTGGATGTCAAAAAAAGAAAATTGTTTTTGTTTCCAAACATTTTTTTTCAAAACTTATTTTTTGCCATAACTTTCTTCATGAATGACTGGTCATATTTGTTTTYTGAAATTCGAATTTCACTCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36864</snp_id>
        <super_contig>c011600929.Contig1</super_contig>
        <contig_pos>38907</contig_pos>
        <strand></strand>
        <context>tcttttcttc[C/A]aaccacagta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CAAAGACACACCGAGTCTCGTCTCTCTGCACTCTAGCCTCTCTTTTCTTC</left_flank>
        <right_flank>AACCACAGTAACTTTTTTAGTTTTAGCTCAAATTTTATGAAAATAACAGT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGGCTAGGCTACAAGGAAGAAAGGACGTGTAGATCAAAAAGTGTAAGGTGTAATTTGTAGTTTGTAGTGTGTGTTTTCGGTGGGAGAACAGAGAAAAGGGGTACATTGTACCTTTCCCTCTTCTTATTATTATCGTTCTTCTTCTTCTTTTTATTACACTGTGTACCCCCTTGTGTACTCTGATCCCCCGATTTTTTTCTCTGATTCTCTTCTCTCTCTCACTATCTCGTCTCATCAACGATTTCACGTCCCACTTGTCATCAGTATTTAGTGGATGTCAAAAAAAGAAAATTGTTTTTGTTTCCAAACATTTTTTTTCAAAACTTATTTTTTGCCATAACTTTCTTCATGAATGACTGGTCATATTTGTTTTTTGAAATTCGAATTTCACTCGTTTCTAGCTTCACAATGAATATAAACACGACTAGGCTCCGCCCACTTTGGTGTCAAAGACACACCGAGTCTCGTCTCTCTGCACTCTAGCCTCTCTTTTCTTCCAACCACAGTAACTTTTTTAGTTTTAGCTCAAATTTTATGAAAATAACAGTGTTCGATTTAACTTGTTTATCGCTTCAAAATGAGTAGAAATATGCCTATATTCGATAGAAATCGAATTTTTCGAAAAATTTTGGGTCCCACCACGACAATGTGAAGAATCAAATATTACCAAACGTAGTCGTGTATAGGCTCATTTTGAAGCTGTGAACATAACAAATAAAATGATTAATTTAAAGCAAACATTAACTGAAAACTAAGAAAGTTGCGGTCGTTTAAAAGGCTAGAGTGCAGAGAAACGAGACACCCTGCGTCTCTGATCCAAAGTGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTGAAAACGCGGGAAATTCGAAGTTTTTAGTTTCCTGCAGAAATTCGGAAAACTAAGCGAGTTATGCCCGCATTTTCCCCATTTTTCCTCTGTTTTCTTCAATTTTTCTCAACTTTTCCAAGATTTTGAACCCCCTAAA</canonical>
            <polymorphic>AATGGCTAGGCTACAAGGAAGAAAGGACGTGTAGATCAAAAAGTGTAAGGTGTAATTTGTAGTTTGTAGTGTGTGTTTTCGGTGGGAGAACAGAGAAAAGGGGTACATTGTACCTTTCCCTCTTCTTATTATTATCGTTCTTCTTCTTCTTTTTATTACACTGTGTACCCCCTTGTGTACTCTGATCCCCCGATTTTTTTCTCTGATTCTCTTCTCTCTCTCACTATCTCGTCTCATCAACGATTTCACGTCCCACTTGTCATCAGTATTTAGTGGATGTCAAAAAAAGAAAATTGTTTTTGTTTCCAAACATTTTTTTTCAAAACTTATTTTTTGCCATAACTTTCTTCATGAATGACTGGTCATATTTGTTTTTTGAAATTCGAATTTCACTCGTTTCTAGCTTCACAATGAATATAAACACGACTAGGCTCCGCCCACTTTGGTGTCAAAGACACACCGAGTCTCGTCTCTCTGCACTCTAGCCTCTCTTTTCTTCMAACCACAGTAACTTTTTTAGTTTTAGCTCAAATTTTATGAAAATAACAGTGTTCGATTTAACTTGTTTATCGCTTCAAAATGAGTAGAAATATGCCTATATTCGATAGAAATCGAATTTTTCGAAAAATTTTGGGTCCCACCACGACAATGTGAAGAATCAAATATTACCAAACGTAGTCGTGTATAGGCTCATTTTGAAGCTGTGAACATAACAAATAAAATGATTAATTTAAAGCAAACATTAACTGAAAACTAAGAAAGTTGCGGTCGTTTAAAAGGCTAGAGTGCAGAGAAACGAGACACCCTGCGTCTCTGATCCAAAGTGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTGAAAACGCGGGAAATTCGAAGTTTTTAGTTTCCTGCAGAAATTCGGAAAACTAAGCGAGTTATGCCCGCATTTTCCCCATTTTTCCTCTGTTTTCTTCAATTTTTCTCAACTTTTCCAAGATTTTGAACCCCCTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATGACTGGTCATATTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTGAAGAAAACAGAGGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>613</pcr_amplicon_size>
		<canonical_amplicon>TGAATGACTGGTCATATTTGTTTTTTGAAATTCGAATTTCACTCGTTTCTAGCTTCACAATGAATATAAACACGACTAGGCTCCGCCCACTTTGGTGTCAAAGACACACCGAGTCTCGTCTCTCTGCACTCTAGCCTCTCTTTTCTTCCAACCACAGTAACTTTTTTAGTTTTAGCTCAAATTTTATGAAAATAACAGTGTTCGATTTAACTTGTTTATCGCTTCAAAATGAGTAGAAATATGCCTATATTCGATAGAAATCGAATTTTTCGAAAAATTTTGGGTCCCACCACGACAATGTGAAGAATCAAATATTACCAAACGTAGTCGTGTATAGGCTCATTTTGAAGCTGTGAACATAACAAATAAAATGATTAATTTAAAGCAAACATTAACTGAAAACTAAGAAAGTTGCGGTCGTTTAAAAGGCTAGAGTGCAGAGAAACGAGACACCCTGCGTCTCTGATCCAAAGTGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTGAAAACGCGGGAAATTCGAAGTTTTTAGTTTCCTGCAGAAATTCGGAAAACTAAGCGAGTTATGCCCGCATTTTCCCCATTTTTCCTCTGTTTTCTTCAAT</canonical_amplicon>
		<polymorphic_amplicon>TGAATGACTGGTCATATTTGTTTTTTGAAATTCGAATTTCACTCGTTTCTAGCTTCACAATGAATATAAACACGACTAGGCTCCGCCCACTTTGGTGTCAAAGACACACCGAGTCTCGTCTCTCTGCACTCTAGCCTCTCTTTTCTTCMAACCACAGTAACTTTTTTAGTTTTAGCTCAAATTTTATGAAAATAACAGTGTTCGATTTAACTTGTTTATCGCTTCAAAATGAGTAGAAATATGCCTATATTCGATAGAAATCGAATTTTTCGAAAAATTTTGGGTCCCACCACGACAATGTGAAGAATCAAATATTACCAAACGTAGTCGTGTATAGGCTCATTTTGAAGCTGTGAACATAACAAATAAAATGATTAATTTAAAGCAAACATTAACTGAAAACTAAGAAAGTTGCGGTCGTTTAAAAGGCTAGAGTGCAGAGAAACGAGACACCCTGCGTCTCTGATCCAAAGTGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTGAAAACGCGGGAAATTCGAAGTTTTTAGTTTCCTGCAGAAATTCGGAAAACTAAGCGAGTTATGCCCGCATTTTCCCCATTTTTCCTCTGTTTTCTTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36865</snp_id>
        <super_contig>c011600929.Contig1</super_contig>
        <contig_pos>38994</contig_pos>
        <strand></strand>
        <context>aaaatgagta[G/T]aaatatgcct</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGAAAATAACAGTGTTCGATTTAACTTGTTTATCGCTTCAAAATGAGTA</left_flank>
        <right_flank>AAATATGCCTATATTCGATAGAAATCGAATTTTTCGAAAAATTTTGGGTC</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACAGAGAAAAGGGGTACATTGTACCTTTCCCTCTTCTTATTATTATCGTTCTTCTTCTTCTTTTTATTACACTGTGTACCCCCTTGTGTACTCTGATCCCCCGATTTTTTTCTCTGATTCTCTTCTCTCTCTCACTATCTCGTCTCATCAACGATTTCACGTCCCACTTGTCATCAGTATTTAGTGGATGTCAAAAAAAGAAAATTGTTTTTGTTTCCAAACATTTTTTTTCAAAACTTATTTTTTGCCATAACTTTCTTCATGAATGACTGGTCATATTTGTTTTTTGAAATTCGAATTTCACTCGTTTCTAGCTTCACAATGAATATAAACACGACTAGGCTCCGCCCACTTTGGTGTCAAAGACACACCGAGTCTCGTCTCTCTGCACTCTAGCCTCTCTTTTCTTCCAACCACAGTAACTTTTTTAGTTTTAGCTCAAATTTTATGAAAATAACAGTGTTCGATTTAACTTGTTTATCGCTTCAAAATGAGTAGAAATATGCCTATATTCGATAGAAATCGAATTTTTCGAAAAATTTTGGGTCCCACCACGACAATGTGAAGAATCAAATATTACCAAACGTAGTCGTGTATAGGCTCATTTTGAAGCTGTGAACATAACAAATAAAATGATTAATTTAAAGCAAACATTAACTGAAAACTAAGAAAGTTGCGGTCGTTTAAAAGGCTAGAGTGCAGAGAAACGAGACACCCTGCGTCTCTGATCCAAAGTGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTGAAAACGCGGGAAATTCGAAGTTTTTAGTTTCCTGCAGAAATTCGGAAAACTAAGCGAGTTATGCCCGCATTTTCCCCATTTTTCCTCTGTTTTCTTCAATTTTTCTCAACTTTTCCAAGATTTTGAACCCCCTAAATCCCAGCATCTTCCAGAAAATGCCGAAATTTTTCGGCGTCGAATGGGTGGACATCTTCTCATCGATTGAACGAAAGAAAACGTATTT</canonical>
            <polymorphic>GAACAGAGAAAAGGGGTACATTGTACCTTTCCCTCTTCTTATTATTATCGTTCTTCTTCTTCTTTTTATTACACTGTGTACCCCCTTGTGTACTCTGATCCCCCGATTTTTTTCTCTGATTCTCTTCTCTCTCTCACTATCTCGTCTCATCAACGATTTCACGTCCCACTTGTCATCAGTATTTAGTGGATGTCAAAAAAAGAAAATTGTTTTTGTTTCCAAACATTTTTTTTCAAAACTTATTTTTTGCCATAACTTTCTTCATGAATGACTGGTCATATTTGTTTTTTGAAATTCGAATTTCACTCGTTTCTAGCTTCACAATGAATATAAACACGACTAGGCTCCGCCCACTTTGGTGTCAAAGACACACCGAGTCTCGTCTCTCTGCACTCTAGCCTCTCTTTTCTTCCAACCACAGTAACTTTTTTAGTTTTAGCTCAAATTTTATGAAAATAACAGTGTTCGATTTAACTTGTTTATCGCTTCAAAATGAGTAKAAATATGCCTATATTCGATAGAAATCGAATTTTTCGAAAAATTTTGGGTCCCACCACGACAATGTGAAGAATCAAATATTACCAAACGTAGTCGTGTATAGGCTCATTTTGAAGCTGTGAACATAACAAATAAAATGATTAATTTAAAGCAAACATTAACTGAAAACTAAGAAAGTTGCGGTCGTTTAAAAGGCTAGAGTGCAGAGAAACGAGACACCCTGCGTCTCTGATCCAAAGTGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTGAAAACGCGGGAAATTCGAAGTTTTTAGTTTCCTGCAGAAATTCGGAAAACTAAGCGAGTTATGCCCGCATTTTCCCCATTTTTCCTCTGTTTTCTTCAATTTTTCTCAACTTTTCCAAGATTTTGAACCCCCTAAATCCCAGCATCTTCCAGAAAATGCCGAAATTTTTCGGCGTCGAATGGGTGGACATCTTCTCATCGATTGAACGAAAGAAAACGTATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATGACTGGTCATATTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTGAAGAAAACAGAGGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>613</pcr_amplicon_size>
		<canonical_amplicon>TGAATGACTGGTCATATTTGTTTTTTGAAATTCGAATTTCACTCGTTTCTAGCTTCACAATGAATATAAACACGACTAGGCTCCGCCCACTTTGGTGTCAAAGACACACCGAGTCTCGTCTCTCTGCACTCTAGCCTCTCTTTTCTTCCAACCACAGTAACTTTTTTAGTTTTAGCTCAAATTTTATGAAAATAACAGTGTTCGATTTAACTTGTTTATCGCTTCAAAATGAGTAGAAATATGCCTATATTCGATAGAAATCGAATTTTTCGAAAAATTTTGGGTCCCACCACGACAATGTGAAGAATCAAATATTACCAAACGTAGTCGTGTATAGGCTCATTTTGAAGCTGTGAACATAACAAATAAAATGATTAATTTAAAGCAAACATTAACTGAAAACTAAGAAAGTTGCGGTCGTTTAAAAGGCTAGAGTGCAGAGAAACGAGACACCCTGCGTCTCTGATCCAAAGTGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTGAAAACGCGGGAAATTCGAAGTTTTTAGTTTCCTGCAGAAATTCGGAAAACTAAGCGAGTTATGCCCGCATTTTCCCCATTTTTCCTCTGTTTTCTTCAAT</canonical_amplicon>
		<polymorphic_amplicon>TGAATGACTGGTCATATTTGTTTTTTGAAATTCGAATTTCACTCGTTTCTAGCTTCACAATGAATATAAACACGACTAGGCTCCGCCCACTTTGGTGTCAAAGACACACCGAGTCTCGTCTCTCTGCACTCTAGCCTCTCTTTTCTTCCAACCACAGTAACTTTTTTAGTTTTAGCTCAAATTTTATGAAAATAACAGTGTTCGATTTAACTTGTTTATCGCTTCAAAATGAGTAKAAATATGCCTATATTCGATAGAAATCGAATTTTTCGAAAAATTTTGGGTCCCACCACGACAATGTGAAGAATCAAATATTACCAAACGTAGTCGTGTATAGGCTCATTTTGAAGCTGTGAACATAACAAATAAAATGATTAATTTAAAGCAAACATTAACTGAAAACTAAGAAAGTTGCGGTCGTTTAAAAGGCTAGAGTGCAGAGAAACGAGACACCCTGCGTCTCTGATCCAAAGTGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTGAAAACGCGGGAAATTCGAAGTTTTTAGTTTCCTGCAGAAATTCGGAAAACTAAGCGAGTTATGCCCGCATTTTCCCCATTTTTCCTCTGTTTTCTTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36866</snp_id>
        <super_contig>c011600929.Contig1</super_contig>
        <contig_pos>39054</contig_pos>
        <strand></strand>
        <context>cccaccacga[C/A]aatgtgaaga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TATATTCGATAGAAATCGAATTTTTCGAAAAATTTTGGGTCCCACCACGA</left_flank>
        <right_flank>AATGTGAAGAATCAAATATTACCAAACGTAGTCGTGTATAGGCTCATTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTTTTATTACACTGTGTACCCCCTTGTGTACTCTGATCCCCCGATTTTTTTCTCTGATTCTCTTCTCTCTCTCACTATCTCGTCTCATCAACGATTTCACGTCCCACTTGTCATCAGTATTTAGTGGATGTCAAAAAAAGAAAATTGTTTTTGTTTCCAAACATTTTTTTTCAAAACTTATTTTTTGCCATAACTTTCTTCATGAATGACTGGTCATATTTGTTTTTTGAAATTCGAATTTCACTCGTTTCTAGCTTCACAATGAATATAAACACGACTAGGCTCCGCCCACTTTGGTGTCAAAGACACACCGAGTCTCGTCTCTCTGCACTCTAGCCTCTCTTTTCTTCCAACCACAGTAACTTTTTTAGTTTTAGCTCAAATTTTATGAAAATAACAGTGTTCGATTTAACTTGTTTATCGCTTCAAAATGAGTAGAAATATGCCTATATTCGATAGAAATCGAATTTTTCGAAAAATTTTGGGTCCCACCACGACAATGTGAAGAATCAAATATTACCAAACGTAGTCGTGTATAGGCTCATTTTGAAGCTGTGAACATAACAAATAAAATGATTAATTTAAAGCAAACATTAACTGAAAACTAAGAAAGTTGCGGTCGTTTAAAAGGCTAGAGTGCAGAGAAACGAGACACCCTGCGTCTCTGATCCAAAGTGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTGAAAACGCGGGAAATTCGAAGTTTTTAGTTTCCTGCAGAAATTCGGAAAACTAAGCGAGTTATGCCCGCATTTTCCCCATTTTTCCTCTGTTTTCTTCAATTTTTCTCAACTTTTCCAAGATTTTGAACCCCCTAAATCCCAGCATCTTCCAGAAAATGCCGAAATTTTTCGGCGTCGAATGGGTGGACATCTTCTCATCGATTGAACGAAAGAAAACGTATTTTGGCGTCGTCTACCACTTTGTTCTCACCTATCCACTTGGATTGTTTGTCACTATTTTACC</canonical>
            <polymorphic>TCTTTTTATTACACTGTGTACCCCCTTGTGTACTCTGATCCCCCGATTTTTTTCTCTGATTCTCTTCTCTCTCTCACTATCTCGTCTCATCAACGATTTCACGTCCCACTTGTCATCAGTATTTAGTGGATGTCAAAAAAAGAAAATTGTTTTTGTTTCCAAACATTTTTTTTCAAAACTTATTTTTTGCCATAACTTTCTTCATGAATGACTGGTCATATTTGTTTTTTGAAATTCGAATTTCACTCGTTTCTAGCTTCACAATGAATATAAACACGACTAGGCTCCGCCCACTTTGGTGTCAAAGACACACCGAGTCTCGTCTCTCTGCACTCTAGCCTCTCTTTTCTTCCAACCACAGTAACTTTTTTAGTTTTAGCTCAAATTTTATGAAAATAACAGTGTTCGATTTAACTTGTTTATCGCTTCAAAATGAGTAGAAATATGCCTATATTCGATAGAAATCGAATTTTTCGAAAAATTTTGGGTCCCACCACGAMAATGTGAAGAATCAAATATTACCAAACGTAGTCGTGTATAGGCTCATTTTGAAGCTGTGAACATAACAAATAAAATGATTAATTTAAAGCAAACATTAACTGAAAACTAAGAAAGTTGCGGTCGTTTAAAAGGCTAGAGTGCAGAGAAACGAGACACCCTGCGTCTCTGATCCAAAGTGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTGAAAACGCGGGAAATTCGAAGTTTTTAGTTTCCTGCAGAAATTCGGAAAACTAAGCGAGTTATGCCCGCATTTTCCCCATTTTTCCTCTGTTTTCTTCAATTTTTCTCAACTTTTCCAAGATTTTGAACCCCCTAAATCCCAGCATCTTCCAGAAAATGCCGAAATTTTTCGGCGTCGAATGGGTGGACATCTTCTCATCGATTGAACGAAAGAAAACGTATTTTGGCGTCGTCTACCACTTTGTTCTCACCTATCCACTTGGATTGTTTGTCACTATTTTACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATGACTGGTCATATTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTGAAGAAAACAGAGGAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>613</pcr_amplicon_size>
		<canonical_amplicon>TGAATGACTGGTCATATTTGTTTTTTGAAATTCGAATTTCACTCGTTTCTAGCTTCACAATGAATATAAACACGACTAGGCTCCGCCCACTTTGGTGTCAAAGACACACCGAGTCTCGTCTCTCTGCACTCTAGCCTCTCTTTTCTTCCAACCACAGTAACTTTTTTAGTTTTAGCTCAAATTTTATGAAAATAACAGTGTTCGATTTAACTTGTTTATCGCTTCAAAATGAGTAGAAATATGCCTATATTCGATAGAAATCGAATTTTTCGAAAAATTTTGGGTCCCACCACGACAATGTGAAGAATCAAATATTACCAAACGTAGTCGTGTATAGGCTCATTTTGAAGCTGTGAACATAACAAATAAAATGATTAATTTAAAGCAAACATTAACTGAAAACTAAGAAAGTTGCGGTCGTTTAAAAGGCTAGAGTGCAGAGAAACGAGACACCCTGCGTCTCTGATCCAAAGTGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTGAAAACGCGGGAAATTCGAAGTTTTTAGTTTCCTGCAGAAATTCGGAAAACTAAGCGAGTTATGCCCGCATTTTCCCCATTTTTCCTCTGTTTTCTTCAAT</canonical_amplicon>
		<polymorphic_amplicon>TGAATGACTGGTCATATTTGTTTTTTGAAATTCGAATTTCACTCGTTTCTAGCTTCACAATGAATATAAACACGACTAGGCTCCGCCCACTTTGGTGTCAAAGACACACCGAGTCTCGTCTCTCTGCACTCTAGCCTCTCTTTTCTTCCAACCACAGTAACTTTTTTAGTTTTAGCTCAAATTTTATGAAAATAACAGTGTTCGATTTAACTTGTTTATCGCTTCAAAATGAGTAGAAATATGCCTATATTCGATAGAAATCGAATTTTTCGAAAAATTTTGGGTCCCACCACGAMAATGTGAAGAATCAAATATTACCAAACGTAGTCGTGTATAGGCTCATTTTGAAGCTGTGAACATAACAAATAAAATGATTAATTTAAAGCAAACATTAACTGAAAACTAAGAAAGTTGCGGTCGTTTAAAAGGCTAGAGTGCAGAGAAACGAGACACCCTGCGTCTCTGATCCAAAGTGGGCGGAGCCTAGTCGTGTTTATACTCATTTTGAAGCTGAAAACGCGGGAAATTCGAAGTTTTTAGTTTCCTGCAGAAATTCGGAAAACTAAGCGAGTTATGCCCGCATTTTCCCCATTTTTCCTCTGTTTTCTTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36867</snp_id>
        <super_contig>c011600929.Contig1</super_contig>
        <contig_pos>130934</contig_pos>
        <strand>+</strand>
        <context>GAAAAATGCG[C/G]GGGGGATTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTAGGACAGATTTTAGCATTGCGCAATAGTCGAATGATCGAAAAATGCG</left_flank>
        <right_flank>GGGGGATTCTATTTCGGGGAAAAAGTAGATCAACTAAAAAAAAAAGATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAACTTTGTCAAATCTTGTCATGTTTATACTCATTTTAAAGCTCTTATTTAGCCAAATCGATTGCTTCAAATGTTATCAAAGTCAGACAAAAACCAACAAAGTTATGGCACCTTTAAGTTAAAGGCTAGAGCGCAGAGAAGCGAGACACACTGCGTCTCTAACCTCAATTCTCAAGATTAAAGGATTCTAGTCGTGTTTAGGCTCATTTTGAAGCTCGTAACTTGAAAAGTTCAAAAATGACATTTTCATGTGGAAAGTCCAACTGGCTGGGGCGCTTCAGGCGCGTTTTATGGAAAAACGCTCTTTTCAGAATTTGAAAAAAAAAGAAGAAGAAGAACTCACTCCTCACCAACGGGTCCCATTCCCATTTGTCCCATTGGATTGATAAACGGGCATGACCATACCGAAGGGGTACAGTGTACCAGGGATACTGTACCCAGAAGGAAAATTAGGACAGATTTTAGCATTGCGCAATAGTCGAATGATCGAAAAATGCGGGGGGGATTCTATTTCGGGGAAAAAGTAGATCAACTAAAAAAAAAAGATGAATTCTTTGTTTCGTTTCAGTTGATCGACTCCGGTATCCGGTTGTTTCTCTCTTCTTTTTTTTATTTCGGCGGGACGAAGATTAAGTGGGCGGAGTCGGGAATTCTCTGTTTATGGCAGTATGTGTATGTGTATGTGTCATCATAATAGAGTTATATATGAGGGTAAAAGAGGAGACTGGATTTTGATTGTTACTGTGTGTGTGTGTGTGTTTTTTTTTGAAAGTTTATAGGATCGGAAAAATAGGGCTCAAAAAATTTTTCAAAAAAAAATGTTTTTTTCGAAAATTCCAAACTTTTCCTGTTACCAAAGTCGCTGTAACTTTCTTCAAACTCAATATTTTTCAACAAATCAAATTGGAAAATGTAGATCTTTAGGAGCTCTACAAAATGGTGTAAAATTCTACATATTATCAGTTATCAGGGGTTCAGCTCGAGCGCTTGAGCTTACCT</canonical>
            <polymorphic>CAAACTTTGTCAAATCTTGTCATGTTTATACTCATTTTAAAGCTCTTATTTAGCCAAATCGATTGCTTCAAATGTTATCAAAGTCAGACAAAAACCAACAAAGTTATGGCACCTTTAAGTTAAAGGCTAGAGCGCAGAGAAGCGAGACACACTGCGTCTCTAACCTCAATTCTCAAGATTAAAGGATTCTAGTCGTGTTTAGGCTCATTTTGAAGCTCGTAACTTGAAAAGTTCAAAAATGACATTTTCATGTGGAAAGTCCAACTGGCTGGGGCGCTTCAGGCGCGTTTTATGGAAAAACGCTCTTTTCAGAATTTGAAAAAAAAAGAAGAAGAAGAACTCACTCCTCACCAACGGGTCCCATTCCCATTTGTCCCATTGGATTGATAAACGGGCATGACCATACCGAAGGGGTACAGTGTACCAGGGATACTGTACCCAGAAGGAAAATTAGGACAGATTTTAGCATTGCGCAATAGTCGAATGATCGAAAAATGCGSGGGGGATTCTATTTCGGGGAAAAAGTAGATCAACTAAAAAAAAAAGATGAATTCTTTGTTTCGTTTCAGTTGATCGACTCCGGTATCCGGTTGTTTCTCTCTTCTTTTTTTTATTTCGGCGGGACGAAGATTAAGTGGGCGGAGTCGGGAATTCTCTGTTTATGGCAGTATGTGTATGTGTATGTGTCATCATAATAGAGTTATATATGAGGGTAAAAGAGGAGACTGGATTTTGATTGTTACTGTGTGTGTGTGTGTGTTTTTTTTTGAAAGTTTATAGGATCGGAAAAATAGGGCTCAAAAAATTTTTCAAAAAAAAATGTTTTTTTCGAAAATTCCAAACTTTTCCTGTTACCAAAGTCGCTGTAACTTTCTTCAAACTCAATATTTTTCAACAAATCAAATTGGAAAATGTAGATCTTTAGGAGCTCTACAAAATGGTGTAAAATTCTACATATTATCAGTTATCAGGGGTTCAGCTCGAGCGCTTGAGCTTACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATACTGTACCCAGAAGGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CATACACATACTGCCATAAACAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATACTGTACCCAGAAGGAAAATTAGGACAGATTTTAGCATTGCGCAATAGTCGAATGATCGAAAAATGCGGGGGGGATTCTATTTCGGGGAAAAAGTAGATCAACTAAAAAAAAAAGATGAATTCTTTGTTTCGTTTCAGTTGATCGACTCCGGTATCCGGTTGTTTCTCTCTTCTTTTTTTTATTTCGGCGGGACGAAGATTAAGTGGGCGGAGTCGGGAATTCTCTGTTTATGGCAGTATGTGTATG</canonical_amplicon>
		<polymorphic_amplicon>GATACTGTACCCAGAAGGAAAATTAGGACAGATTTTAGCATTGCGCAATAGTCGAATGATCGAAAAATGCGSGGGGGATTCTATTTCGGGGAAAAAGTAGATCAACTAAAAAAAAAAGATGAATTCTTTGTTTCGTTTCAGTTGATCGACTCCGGTATCCGGTTGTTTCTCTCTTCTTTTTTTTATTTCGGCGGGACGAAGATTAAGTGGGCGGAGTCGGGAATTCTCTGTTTATGGCAGTATGTGTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36868</snp_id>
        <super_contig>c011600929.Contig1</super_contig>
        <contig_pos>130970</contig_pos>
        <strand>+</strand>
        <context>TAGATCAACT[C/T]AAAAAAAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATCGAAAAATGCGGGGGGGATTCTATTTCGGGGAAAAAGTAGATCAACT</left_flank>
        <right_flank>AAAAAAAAAGATGAATTCTTTGTTTCGTTTCAGTTGATCGACTCCGGTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAGCTCTTATTTAGCCAAATCGATTGCTTCAAATGTTATCAAAGTCAGACAAAAACCAACAAAGTTATGGCACCTTTAAGTTAAAGGCTAGAGCGCAGAGAAGCGAGACACACTGCGTCTCTAACCTCAATTCTCAAGATTAAAGGATTCTAGTCGTGTTTAGGCTCATTTTGAAGCTCGTAACTTGAAAAGTTCAAAAATGACATTTTCATGTGGAAAGTCCAACTGGCTGGGGCGCTTCAGGCGCGTTTTATGGAAAAACGCTCTTTTCAGAATTTGAAAAAAAAAGAAGAAGAAGAACTCACTCCTCACCAACGGGTCCCATTCCCATTTGTCCCATTGGATTGATAAACGGGCATGACCATACCGAAGGGGTACAGTGTACCAGGGATACTGTACCCAGAAGGAAAATTAGGACAGATTTTAGCATTGCGCAATAGTCGAATGATCGAAAAATGCGGGGGGGATTCTATTTCGGGGAAAAAGTAGATCAACTAAAAAAAAAAGATGAATTCTTTGTTTCGTTTCAGTTGATCGACTCCGGTATCCGGTTGTTTCTCTCTTCTTTTTTTTATTTCGGCGGGACGAAGATTAAGTGGGCGGAGTCGGGAATTCTCTGTTTATGGCAGTATGTGTATGTGTATGTGTCATCATAATAGAGTTATATATGAGGGTAAAAGAGGAGACTGGATTTTGATTGTTACTGTGTGTGTGTGTGTGTTTTTTTTTGAAAGTTTATAGGATCGGAAAAATAGGGCTCAAAAAATTTTTCAAAAAAAAATGTTTTTTTCGAAAATTCCAAACTTTTCCTGTTACCAAAGTCGCTGTAACTTTCTTCAAACTCAATATTTTTCAACAAATCAAATTGGAAAATGTAGATCTTTAGGAGCTCTACAAAATGGTGTAAAATTCTACATATTATCAGTTATCAGGGGTTCAGCTCGAGCGCTTGAGCTTACCTGACCTCGTTTCATGGAACTACAAGATTCGAGTCACT</canonical>
            <polymorphic>TTAAAGCTCTTATTTAGCCAAATCGATTGCTTCAAATGTTATCAAAGTCAGACAAAAACCAACAAAGTTATGGCACCTTTAAGTTAAAGGCTAGAGCGCAGAGAAGCGAGACACACTGCGTCTCTAACCTCAATTCTCAAGATTAAAGGATTCTAGTCGTGTTTAGGCTCATTTTGAAGCTCGTAACTTGAAAAGTTCAAAAATGACATTTTCATGTGGAAAGTCCAACTGGCTGGGGCGCTTCAGGCGCGTTTTATGGAAAAACGCTCTTTTCAGAATTTGAAAAAAAAAGAAGAAGAAGAACTCACTCCTCACCAACGGGTCCCATTCCCATTTGTCCCATTGGATTGATAAACGGGCATGACCATACCGAAGGGGTACAGTGTACCAGGGATACTGTACCCAGAAGGAAAATTAGGACAGATTTTAGCATTGCGCAATAGTCGAATGATCGAAAAATGCGGGGGGGATTCTATTTCGGGGAAAAAGTAGATCAACTYAAAAAAAAAGATGAATTCTTTGTTTCGTTTCAGTTGATCGACTCCGGTATCCGGTTGTTTCTCTCTTCTTTTTTTTATTTCGGCGGGACGAAGATTAAGTGGGCGGAGTCGGGAATTCTCTGTTTATGGCAGTATGTGTATGTGTATGTGTCATCATAATAGAGTTATATATGAGGGTAAAAGAGGAGACTGGATTTTGATTGTTACTGTGTGTGTGTGTGTGTTTTTTTTTGAAAGTTTATAGGATCGGAAAAATAGGGCTCAAAAAATTTTTCAAAAAAAAATGTTTTTTTCGAAAATTCCAAACTTTTCCTGTTACCAAAGTCGCTGTAACTTTCTTCAAACTCAATATTTTTCAACAAATCAAATTGGAAAATGTAGATCTTTAGGAGCTCTACAAAATGGTGTAAAATTCTACATATTATCAGTTATCAGGGGTTCAGCTCGAGCGCTTGAGCTTACCTGACCTCGTTTCATGGAACTACAAGATTCGAGTCACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATACTGTACCCAGAAGGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CATACACATACTGCCATAAACAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATACTGTACCCAGAAGGAAAATTAGGACAGATTTTAGCATTGCGCAATAGTCGAATGATCGAAAAATGCGGGGGGGATTCTATTTCGGGGAAAAAGTAGATCAACTAAAAAAAAAAGATGAATTCTTTGTTTCGTTTCAGTTGATCGACTCCGGTATCCGGTTGTTTCTCTCTTCTTTTTTTTATTTCGGCGGGACGAAGATTAAGTGGGCGGAGTCGGGAATTCTCTGTTTATGGCAGTATGTGTATG</canonical_amplicon>
		<polymorphic_amplicon>GATACTGTACCCAGAAGGAAAATTAGGACAGATTTTAGCATTGCGCAATAGTCGAATGATCGAAAAATGCGGGGGGGATTCTATTTCGGGGAAAAAGTAGATCAACTYAAAAAAAAAGATGAATTCTTTGTTTCGTTTCAGTTGATCGACTCCGGTATCCGGTTGTTTCTCTCTTCTTTTTTTTATTTCGGCGGGACGAAGATTAAGTGGGCGGAGTCGGGAATTCTCTGTTTATGGCAGTATGTGTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36869</snp_id>
        <super_contig>c011600929.Contig1</super_contig>
        <contig_pos>131005</contig_pos>
        <strand></strand>
        <context>TCGTTTCAGT[T/C]GATCGACTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAAGTAGATCAACTAAAAAAAAAAGATGAATTCTTTGTTTCGTTTCAGT</left_flank>
        <right_flank>GATCGACTCCGGTATCCGGTTGTTTCTCTCTTCTTTTTTTTATTTCGGCG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTTATCAAAGTCAGACAAAAACCAACAAAGTTATGGCACCTTTAAGTTAAAGGCTAGAGCGCAGAGAAGCGAGACACACTGCGTCTCTAACCTCAATTCTCAAGATTAAAGGATTCTAGTCGTGTTTAGGCTCATTTTGAAGCTCGTAACTTGAAAAGTTCAAAAATGACATTTTCATGTGGAAAGTCCAACTGGCTGGGGCGCTTCAGGCGCGTTTTATGGAAAAACGCTCTTTTCAGAATTTGAAAAAAAAAGAAGAAGAAGAACTCACTCCTCACCAACGGGTCCCATTCCCATTTGTCCCATTGGATTGATAAACGGGCATGACCATACCGAAGGGGTACAGTGTACCAGGGATACTGTACCCAGAAGGAAAATTAGGACAGATTTTAGCATTGCGCAATAGTCGAATGATCGAAAAATGCGGGGGGGATTCTATTTCGGGGAAAAAGTAGATCAACTAAAAAAAAAAGATGAATTCTTTGTTTCGTTTCAGTTGATCGACTCCGGTATCCGGTTGTTTCTCTCTTCTTTTTTTTATTTCGGCGGGACGAAGATTAAGTGGGCGGAGTCGGGAATTCTCTGTTTATGGCAGTATGTGTATGTGTATGTGTCATCATAATAGAGTTATATATGAGGGTAAAAGAGGAGACTGGATTTTGATTGTTACTGTGTGTGTGTGTGTGTTTTTTTTTGAAAGTTTATAGGATCGGAAAAATAGGGCTCAAAAAATTTTTCAAAAAAAAATGTTTTTTTCGAAAATTCCAAACTTTTCCTGTTACCAAAGTCGCTGTAACTTTCTTCAAACTCAATATTTTTCAACAAATCAAATTGGAAAATGTAGATCTTTAGGAGCTCTACAAAATGGTGTAAAATTCTACATATTATCAGTTATCAGGGGTTCAGCTCGAGCGCTTGAGCTTACCTGACCTCGTTTCATGGAACTACAAGATTCGAGTCACTAAAATTAGCTGTAACTTTCTTCAAACTCAATATTT</canonical>
            <polymorphic>ATGTTATCAAAGTCAGACAAAAACCAACAAAGTTATGGCACCTTTAAGTTAAAGGCTAGAGCGCAGAGAAGCGAGACACACTGCGTCTCTAACCTCAATTCTCAAGATTAAAGGATTCTAGTCGTGTTTAGGCTCATTTTGAAGCTCGTAACTTGAAAAGTTCAAAAATGACATTTTCATGTGGAAAGTCCAACTGGCTGGGGCGCTTCAGGCGCGTTTTATGGAAAAACGCTCTTTTCAGAATTTGAAAAAAAAAGAAGAAGAAGAACTCACTCCTCACCAACGGGTCCCATTCCCATTTGTCCCATTGGATTGATAAACGGGCATGACCATACCGAAGGGGTACAGTGTACCAGGGATACTGTACCCAGAAGGAAAATTAGGACAGATTTTAGCATTGCGCAATAGTCGAATGATCGAAAAATGCGGGGGGGATTCTATTTCGGGGAAAAAGTAGATCAACTAAAAAAAAAAGATGAATTCTTTGTTTCGTTTCAGTYGATCGACTCCGGTATCCGGTTGTTTCTCTCTTCTTTTTTTTATTTCGGCGGGACGAAGATTAAGTGGGCGGAGTCGGGAATTCTCTGTTTATGGCAGTATGTGTATGTGTATGTGTCATCATAATAGAGTTATATATGAGGGTAAAAGAGGAGACTGGATTTTGATTGTTACTGTGTGTGTGTGTGTGTTTTTTTTTGAAAGTTTATAGGATCGGAAAAATAGGGCTCAAAAAATTTTTCAAAAAAAAATGTTTTTTTCGAAAATTCCAAACTTTTCCTGTTACCAAAGTCGCTGTAACTTTCTTCAAACTCAATATTTTTCAACAAATCAAATTGGAAAATGTAGATCTTTAGGAGCTCTACAAAATGGTGTAAAATTCTACATATTATCAGTTATCAGGGGTTCAGCTCGAGCGCTTGAGCTTACCTGACCTCGTTTCATGGAACTACAAGATTCGAGTCACTAAAATTAGCTGTAACTTTCTTCAAACTCAATATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATACTGTACCCAGAAGGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CATACACATACTGCCATAAACAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATACTGTACCCAGAAGGAAAATTAGGACAGATTTTAGCATTGCGCAATAGTCGAATGATCGAAAAATGCGGGGGGGATTCTATTTCGGGGAAAAAGTAGATCAACTAAAAAAAAAAGATGAATTCTTTGTTTCGTTTCAGTTGATCGACTCCGGTATCCGGTTGTTTCTCTCTTCTTTTTTTTATTTCGGCGGGACGAAGATTAAGTGGGCGGAGTCGGGAATTCTCTGTTTATGGCAGTATGTGTATG</canonical_amplicon>
		<polymorphic_amplicon>GATACTGTACCCAGAAGGAAAATTAGGACAGATTTTAGCATTGCGCAATAGTCGAATGATCGAAAAATGCGGGGGGGATTCTATTTCGGGGAAAAAGTAGATCAACTAAAAAAAAAAGATGAATTCTTTGTTTCGTTTCAGTYGATCGACTCCGGTATCCGGTTGTTTCTCTCTTCTTTTTTTTATTTCGGCGGGACGAAGATTAAGTGGGCGGAGTCGGGAATTCTCTGTTTATGGCAGTATGTGTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36872</snp_id>
        <super_contig>c011601162.Contig1</super_contig>
        <contig_pos>7358</contig_pos>
        <strand></strand>
        <context>CTCGACTTTT[T/C]CATTACCATG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TATAACTTCAAAACAATTTTCCCATCTTTTTGATTTACAGCTCGACTTTT</left_flank>
        <right_flank>CATTACCATGTGAGTGCTATTCTACTAATTTTTGTATTAAAACAAAGGTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTGGAGAAAATGGGGACCATTGAAAAAAGTATACGGAACATTATTTCCTGAGCTAGTAGATTCTGATTTCCACAAAAAATTATTTTATGAATAAAACACAATAGTTTATGTAAAAAACTTTTAGGAAAAAAATACCTAGAAAAGTTTTCTTTTACTTTGGCTGGAACGCAAAAAAATTTTAAAAAAACACAGTGTTTCACATTTTCTAGATTTCATTTTAACAATTTTGAAAATCCATTCTGATTATTTTGTGAATACTTCAATTTCCAACATTTTCCTAGAAAAGGTATATAAATTCTGTCATTGTGAATAATTATGAAAACTAACTGAACCAGAGAAGCCTATTTTTAAAAAATAATTTGGAGAAACTAGGACCAGCATATTTTCACAATTTCAATATGACAACAAAGCGAGAATCCAAGAATGTAGATCAATATGATTGCTAATATAACTTCAAAACAATTTTCCCATCTTTTTGATTTACAGCTCGACTTTTTCATTACCATGTGAGTGCTATTCTACTAATTTTTGTATTAAAACAAAGGTTCATTGAAAAAGTCAATACGAACAATTGAAGGAAATTTATTCTAATAGTTTATAGTTTGTGTACTTTTATAAAAAAATTAATAAAACAGACTCACTGAGATAGTCAATCAGTGAAATTTATTCTGGTCACTACTATTTTTTTCTGATTTTAACAAAAAATTATGTTTCAAGCGGAACATTAAGTTTACAATATTTACTCTAGTTTTACATTCAGACTCTAAATAAACTCCATTACACTTTTTTCGAGAAAAAAACAACTGAAAAAAAACTCACCTTGTTCCAGAATCCTCTCCGGATGGCGTCGGTGTGTTTGACCTTTTGAATTCCAAGAAGAAAAATGAAAGAAGAATCACAATTCGGATATCATATTGCCAAAGGTAGAGGGTCCCGTTTCAAACGGATGTGTGGGGGATTGAATACCTGGAATTTTTGAATGGGTTGGGTTTCAAAA</canonical>
            <polymorphic>TATTTGGAGAAAATGGGGACCATTGAAAAAAGTATACGGAACATTATTTCCTGAGCTAGTAGATTCTGATTTCCACAAAAAATTATTTTATGAATAAAACACAATAGTTTATGTAAAAAACTTTTAGGAAAAAAATACCTAGAAAAGTTTTCTTTTACTTTGGCTGGAACGCAAAAAAATTTTAAAAAAACACAGTGTTTCACATTTTCTAGATTTCATTTTAACAATTTTGAAAATCCATTCTGATTATTTTGTGAATACTTCAATTTCCAACATTTTCCTAGAAAAGGTATATAAATTCTGTCATTGTGAATAATTATGAAAACTAACTGAACCAGAGAAGCCTATTTTTAAAAAATAATTTGGAGAAACTAGGACCAGCATATTTTCACAATTTCAATATGACAACAAAGCGAGAATCCAAGAATGTAGATCAATATGATTGCTAATATAACTTCAAAACAATTTTCCCATCTTTTTGATTTACAGCTCGACTTTTYCATTACCATGTGAGTGCTATTCTACTAATTTTTGTATTAAAACAAAGGTTCATTGAAAAAGTCAATACGAACAATTGAAGGAAATTTATTCTAATAGTTTATAGTTTGTGTACTTTTATAAAAAAATTAATAAAACAGACTCACTGAGATAGTCAATCAGTGAAATTTATTCTGGTCACTACTATTTTTTTCTGATTTTAACAAAAAATTATGTTTCAAGCGGAACATTAAGTTTACAATATTTACTCTAGTTTTACATTCAGACTCTAAATAAACTCCATTACACTTTTTTCGAGAAAAAAACAACTGAAAAAAAACTCACCTTGTTCCAGAATCCTCTCCGGATGGCGTCGGTGTGTTTGACCTTTTGAATTCCAAGAAGAAAAATGAAAGAAGAATCACAATTCGGATATCATATTGCCAAAGGTAGAGGGTCCCGTTTCAAACGGATGTGTGGGGGATTGAATACCTGGAATTTTTGAATGGGTTGGGTTTCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAAAACTAACTGAACCAGAGA</pcr_primer_p1>
		<pcr_primer_p2>TATTGACTTTTTCAATGAACCTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGAAAACTAACTGAACCAGAGAAGCCTATTTTTAAAAAATAATTTGGAGAAACTAGGACCAGCATATTTTCACAATTTCAATATGACAACAAAGCGAGAATCCAAGAATGTAGATCAATATGATTGCTAATATAACTTCAAAACAATTTTCCCATCTTTTTGATTTACAGCTCGACTTTTTCATTACCATGTGAGTGCTATTCTACTAATTTTTGTATTAAAACAAAGGTTCATTGAAAAAGTCAATA</canonical_amplicon>
		<polymorphic_amplicon>ATGAAAACTAACTGAACCAGAGAAGCCTATTTTTAAAAAATAATTTGGAGAAACTAGGACCAGCATATTTTCACAATTTCAATATGACAACAAAGCGAGAATCCAAGAATGTAGATCAATATGATTGCTAATATAACTTCAAAACAATTTTCCCATCTTTTTGATTTACAGCTCGACTTTTYCATTACCATGTGAGTGCTATTCTACTAATTTTTGTATTAAAACAAAGGTTCATTGAAAAAGTCAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36873</snp_id>
        <super_contig>c011601162.Contig1</super_contig>
        <contig_pos>8082</contig_pos>
        <strand>+</strand>
        <context>TTTGATAACT[C/T]TGTAAAACAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAGATTCTGAGAATTTCGACTGATTAAATTCAATATGAATTTGATAACT</left_flank>
        <right_flank>TGTAAAACAACGATGAAACGGGAAATTTAGAAAAAAACATCTGTTGTGTA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATTAAGTTTACAATATTTACTCTAGTTTTACATTCAGACTCTAAATAAACTCCATTACACTTTTTTCGAGAAAAAAACAACTGAAAAAAAACTCACCTTGTTCCAGAATCCTCTCCGGATGGCGTCGGTGTGTTTGACCTTTTGAATTCCAAGAAGAAAAATGAAAGAAGAATCACAATTCGGATATCATATTGCCAAAGGTAGAGGGTCCCGTTTCAAACGGATGTGTGGGGGATTGAATACCTGGAATTTTTGAATGGGTTGGGTTTCAAAAAAAAAATTTTCCTGTTTCGCAAAAATTCTGAATTTACATATAAATGGGATCGGGAGTTTTTCGATGGGTAAATTTCGAAAGTCATGGAAATCAGAAGTACCGGACAAAATGAAAAAAAAATTGGACTTTAAAAAAAGTCGCTCAAAATTATGGTAAAGCTTTTCAAAGTTTTAGGAGATTCTGAGAATTTCGACTGATTAAATTCAATATGAATTTGATAACTTTGTAAAACAACGATGAAACGGGAAATTTAGAAAAAAACATCTGTTGTGTACAGATTTGAACAAAACGAAGAGGTTGAAGGAATTTCTTTCTATTTCTCTTCCCCGTCCTTTTCCTTCGTTTTACTCATTTCTTATTCTTAAACGAAATAGTGTTTTGAGTTGCGAACATTTGACAAATTGGACGATGGAAACGAAGAAAAAAGAGGAGGAGACAAAGAAAAAAAAACAGAATCCCAGTGAAAATGATTCGTTTTGTTTTCTAGTGGAATTAAAGAGGAAACAACATTTTTGATAGAATGAATGACAGGTTCGCACAACCAACCTCTAAATTAGTAATAACAAATAGCTTTAAAAATTTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGA</canonical>
            <polymorphic>ACATTAAGTTTACAATATTTACTCTAGTTTTACATTCAGACTCTAAATAAACTCCATTACACTTTTTTCGAGAAAAAAACAACTGAAAAAAAACTCACCTTGTTCCAGAATCCTCTCCGGATGGCGTCGGTGTGTTTGACCTTTTGAATTCCAAGAAGAAAAATGAAAGAAGAATCACAATTCGGATATCATATTGCCAAAGGTAGAGGGTCCCGTTTCAAACGGATGTGTGGGGGATTGAATACCTGGAATTTTTGAATGGGTTGGGTTTCAAAAAAAAAATTTTCCTGTTTCGCAAAAATTCTGAATTTACATATAAATGGGATCGGGAGTTTTTCGATGGGTAAATTTCGAAAGTCATGGAAATCAGAAGTACCGGACAAAATGAAAAAAAAATTGGACTTTAAAAAAAGTCGCTCAAAATTATGGTAAAGCTTTTCAAAGTTTTAGGAGATTCTGAGAATTTCGACTGATTAAATTCAATATGAATTTGATAACTYTGTAAAACAACGATGAAACGGGAAATTTAGAAAAAAACATCTGTTGTGTACAGATTTGAACAAAACGAAGAGGTTGAAGGAATTTCTTTCTATTTCTCTTCCCCGTCCTTTTCCTTCGTTTTACTCATTTCTTATTCTTAAACGAAATAGTGTTTTGAGTTGCGAACATTTGACAAATTGGACGATGGAAACGAAGAAAAAAGAGGAGGAGACAAAGAAAAAAAAACAGAATCCCAGTGAAAATGATTCGTTTTGTTTTCTAGTGGAATTAAAGAGGAAACAACATTTTTGATAGAATGAATGACAGGTTCGCACAACCAACCTCTAAATTAGTAATAACAAATAGCTTTAAAAATTTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGTCATGGAAATCAGAAGTA</pcr_primer_p1>
		<pcr_primer_p2>GGGGAAGAGAAATAGAAAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GAAAGTCATGGAAATCAGAAGTACCGGACAAAATGAAAAAAAAATTGGACTTTAAAAAAAGTCGCTCAAAATTATGGTAAAGCTTTTCAAAGTTTTAGGAGATTCTGAGAATTTCGACTGATTAAATTCAATATGAATTTGATAACTTTGTAAAACAACGATGAAACGGGAAATTTAGAAAAAAACATCTGTTGTGTACAGATTTGAACAAAACGAAGAGGTTGAAGGAATTTCTTTCTATTTCTCTTCCCC</canonical_amplicon>
		<polymorphic_amplicon>GAAAGTCATGGAAATCAGAAGTACCGGACAAAATGAAAAAAAAATTGGACTTTAAAAAAAGTCGCTCAAAATTATGGTAAAGCTTTTCAAAGTTTTAGGAGATTCTGAGAATTTCGACTGATTAAATTCAATATGAATTTGATAACTYTGTAAAACAACGATGAAACGGGAAATTTAGAAAAAAACATCTGTTGTGTACAGATTTGAACAAAACGAAGAGGTTGAAGGAATTTCTTTCTATTTCTCTTCCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36874</snp_id>
        <super_contig>c011601162.Contig1</super_contig>
        <contig_pos>8216</contig_pos>
        <strand>+</strand>
        <context>CTCATTTCTT[A/C]TTCTTAAACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCTTTCTATTTCTCTTCCCCGTCCTTTTCCTTCGTTTTACTCATTTCTT</left_flank>
        <right_flank>TTCTTAAACGAAATAGTGTTTTGAGTTGCGAACATTTGACAAATTGGACG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGACCTTTTGAATTCCAAGAAGAAAAATGAAAGAAGAATCACAATTCGGATATCATATTGCCAAAGGTAGAGGGTCCCGTTTCAAACGGATGTGTGGGGGATTGAATACCTGGAATTTTTGAATGGGTTGGGTTTCAAAAAAAAAATTTTCCTGTTTCGCAAAAATTCTGAATTTACATATAAATGGGATCGGGAGTTTTTCGATGGGTAAATTTCGAAAGTCATGGAAATCAGAAGTACCGGACAAAATGAAAAAAAAATTGGACTTTAAAAAAAGTCGCTCAAAATTATGGTAAAGCTTTTCAAAGTTTTAGGAGATTCTGAGAATTTCGACTGATTAAATTCAATATGAATTTGATAACTTTGTAAAACAACGATGAAACGGGAAATTTAGAAAAAAACATCTGTTGTGTACAGATTTGAACAAAACGAAGAGGTTGAAGGAATTTCTTTCTATTTCTCTTCCCCGTCCTTTTCCTTCGTTTTACTCATTTCTTATTCTTAAACGAAATAGTGTTTTGAGTTGCGAACATTTGACAAATTGGACGATGGAAACGAAGAAAAAAGAGGAGGAGACAAAGAAAAAAAAACAGAATCCCAGTGAAAATGATTCGTTTTGTTTTCTAGTGGAATTAAAGAGGAAACAACATTTTTGATAGAATGAATGACAGGTTCGCACAACCAACCTCTAAATTAGTAATAACAAATAGCTTTAAAAATTTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGA</canonical>
            <polymorphic>TTTGACCTTTTGAATTCCAAGAAGAAAAATGAAAGAAGAATCACAATTCGGATATCATATTGCCAAAGGTAGAGGGTCCCGTTTCAAACGGATGTGTGGGGGATTGAATACCTGGAATTTTTGAATGGGTTGGGTTTCAAAAAAAAAATTTTCCTGTTTCGCAAAAATTCTGAATTTACATATAAATGGGATCGGGAGTTTTTCGATGGGTAAATTTCGAAAGTCATGGAAATCAGAAGTACCGGACAAAATGAAAAAAAAATTGGACTTTAAAAAAAGTCGCTCAAAATTATGGTAAAGCTTTTCAAAGTTTTAGGAGATTCTGAGAATTTCGACTGATTAAATTCAATATGAATTTGATAACTTTGTAAAACAACGATGAAACGGGAAATTTAGAAAAAAACATCTGTTGTGTACAGATTTGAACAAAACGAAGAGGTTGAAGGAATTTCTTTCTATTTCTCTTCCCCGTCCTTTTCCTTCGTTTTACTCATTTCTTMTTCTTAAACGAAATAGTGTTTTGAGTTGCGAACATTTGACAAATTGGACGATGGAAACGAAGAAAAAAGAGGAGGAGACAAAGAAAAAAAAACAGAATCCCAGTGAAAATGATTCGTTTTGTTTTCTAGTGGAATTAAAGAGGAAACAACATTTTTGATAGAATGAATGACAGGTTCGCACAACCAACCTCTAAATTAGTAATAACAAATAGCTTTAAAAATTTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACGGGAAATTTAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CACTAGAAAACAAAACGAATCAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAAACGGGAAATTTAGAAAAAAACATCTGTTGTGTACAGATTTGAACAAAACGAAGAGGTTGAAGGAATTTCTTTCTATTTCTCTTCCCCGTCCTTTTCCTTCGTTTTACTCATTTCTTATTCTTAAACGAAATAGTGTTTTGAGTTGCGAACATTTGACAAATTGGACGATGGAAACGAAGAAAAAAGAGGAGGAGACAAAGAAAAAAAAACAGAATCCCAGTGAAAATGATTCGTTTTGTTTTCTAGTG</canonical_amplicon>
		<polymorphic_amplicon>GAAACGGGAAATTTAGAAAAAAACATCTGTTGTGTACAGATTTGAACAAAACGAAGAGGTTGAAGGAATTTCTTTCTATTTCTCTTCCCCGTCCTTTTCCTTCGTTTTACTCATTTCTTMTTCTTAAACGAAATAGTGTTTTGAGTTGCGAACATTTGACAAATTGGACGATGGAAACGAAGAAAAAAGAGGAGGAGACAAAGAAAAAAAAACAGAATCCCAGTGAAAATGATTCGTTTTGTTTTCTAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36875</snp_id>
        <super_contig>c011601162.Contig1</super_contig>
        <contig_pos>8238</contig_pos>
        <strand>+</strand>
        <context>AATAGTGTTT[C/T]GAGTTGCGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCTTTTCCTTCGTTTTACTCATTTCTTATTCTTAAACGAAATAGTGTTT</left_flank>
        <right_flank>GAGTTGCGAACATTTGACAAATTGGACGATGGAAACGAAGAAAAAAGAGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAAAATGAAAGAAGAATCACAATTCGGATATCATATTGCCAAAGGTAGAGGGTCCCGTTTCAAACGGATGTGTGGGGGATTGAATACCTGGAATTTTTGAATGGGTTGGGTTTCAAAAAAAAAATTTTCCTGTTTCGCAAAAATTCTGAATTTACATATAAATGGGATCGGGAGTTTTTCGATGGGTAAATTTCGAAAGTCATGGAAATCAGAAGTACCGGACAAAATGAAAAAAAAATTGGACTTTAAAAAAAGTCGCTCAAAATTATGGTAAAGCTTTTCAAAGTTTTAGGAGATTCTGAGAATTTCGACTGATTAAATTCAATATGAATTTGATAACTTTGTAAAACAACGATGAAACGGGAAATTTAGAAAAAAACATCTGTTGTGTACAGATTTGAACAAAACGAAGAGGTTGAAGGAATTTCTTTCTATTTCTCTTCCCCGTCCTTTTCCTTCGTTTTACTCATTTCTTATTCTTAAACGAAATAGTGTTTTGAGTTGCGAACATTTGACAAATTGGACGATGGAAACGAAGAAAAAAGAGGAGGAGACAAAGAAAAAAAAACAGAATCCCAGTGAAAATGATTCGTTTTGTTTTCTAGTGGAATTAAAGAGGAAACAACATTTTTGATAGAATGAATGACAGGTTCGCACAACCAACCTCTAAATTAGTAATAACAAATAGCTTTAAAAATTTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTC</canonical>
            <polymorphic>AGAAAAATGAAAGAAGAATCACAATTCGGATATCATATTGCCAAAGGTAGAGGGTCCCGTTTCAAACGGATGTGTGGGGGATTGAATACCTGGAATTTTTGAATGGGTTGGGTTTCAAAAAAAAAATTTTCCTGTTTCGCAAAAATTCTGAATTTACATATAAATGGGATCGGGAGTTTTTCGATGGGTAAATTTCGAAAGTCATGGAAATCAGAAGTACCGGACAAAATGAAAAAAAAATTGGACTTTAAAAAAAGTCGCTCAAAATTATGGTAAAGCTTTTCAAAGTTTTAGGAGATTCTGAGAATTTCGACTGATTAAATTCAATATGAATTTGATAACTTTGTAAAACAACGATGAAACGGGAAATTTAGAAAAAAACATCTGTTGTGTACAGATTTGAACAAAACGAAGAGGTTGAAGGAATTTCTTTCTATTTCTCTTCCCCGTCCTTTTCCTTCGTTTTACTCATTTCTTATTCTTAAACGAAATAGTGTTTYGAGTTGCGAACATTTGACAAATTGGACGATGGAAACGAAGAAAAAAGAGGAGGAGACAAAGAAAAAAAAACAGAATCCCAGTGAAAATGATTCGTTTTGTTTTCTAGTGGAATTAAAGAGGAAACAACATTTTTGATAGAATGAATGACAGGTTCGCACAACCAACCTCTAAATTAGTAATAACAAATAGCTTTAAAAATTTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACGGGAAATTTAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CACTAGAAAACAAAACGAATCAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAAACGGGAAATTTAGAAAAAAACATCTGTTGTGTACAGATTTGAACAAAACGAAGAGGTTGAAGGAATTTCTTTCTATTTCTCTTCCCCGTCCTTTTCCTTCGTTTTACTCATTTCTTATTCTTAAACGAAATAGTGTTTTGAGTTGCGAACATTTGACAAATTGGACGATGGAAACGAAGAAAAAAGAGGAGGAGACAAAGAAAAAAAAACAGAATCCCAGTGAAAATGATTCGTTTTGTTTTCTAGTG</canonical_amplicon>
		<polymorphic_amplicon>GAAACGGGAAATTTAGAAAAAAACATCTGTTGTGTACAGATTTGAACAAAACGAAGAGGTTGAAGGAATTTCTTTCTATTTCTCTTCCCCGTCCTTTTCCTTCGTTTTACTCATTTCTTATTCTTAAACGAAATAGTGTTTYGAGTTGCGAACATTTGACAAATTGGACGATGGAAACGAAGAAAAAAGAGGAGGAGACAAAGAAAAAAAAACAGAATCCCAGTGAAAATGATTCGTTTTGTTTTCTAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36876</snp_id>
        <super_contig>c011601162.Contig1</super_contig>
        <contig_pos>8404</contig_pos>
        <strand>+</strand>
        <context>GCACAACCAA[C/T]CTCTAAATTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGAGGAAACAACATTTTTGATAGAATGAATGACAGGTTCGCACAACCAA</left_flank>
        <right_flank>CTCTAAATTAGTAATAACAAATAGCTTTAAAAATTTTAGGAAAATTGTGA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATCGGGAGTTTTTCGATGGGTAAATTTCGAAAGTCATGGAAATCAGAAGTACCGGACAAAATGAAAAAAAAATTGGACTTTAAAAAAAGTCGCTCAAAATTATGGTAAAGCTTTTCAAAGTTTTAGGAGATTCTGAGAATTTCGACTGATTAAATTCAATATGAATTTGATAACTTTGTAAAACAACGATGAAACGGGAAATTTAGAAAAAAACATCTGTTGTGTACAGATTTGAACAAAACGAAGAGGTTGAAGGAATTTCTTTCTATTTCTCTTCCCCGTCCTTTTCCTTCGTTTTACTCATTTCTTATTCTTAAACGAAATAGTGTTTTGAGTTGCGAACATTTGACAAATTGGACGATGGAAACGAAGAAAAAAGAGGAGGAGACAAAGAAAAAAAAACAGAATCCCAGTGAAAATGATTCGTTTTGTTTTCTAGTGGAATTAAAGAGGAAACAACATTTTTGATAGAATGAATGACAGGTTCGCACAACCAACCTCTAAATTAGTAATAACAAATAGCTTTAAAAATTTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGGACGACAGCTGTACGCAGAGTGTCATTAAGCGTTGTACACCGTTACGGTAGAATGCATAC</canonical>
            <polymorphic>GGATCGGGAGTTTTTCGATGGGTAAATTTCGAAAGTCATGGAAATCAGAAGTACCGGACAAAATGAAAAAAAAATTGGACTTTAAAAAAAGTCGCTCAAAATTATGGTAAAGCTTTTCAAAGTTTTAGGAGATTCTGAGAATTTCGACTGATTAAATTCAATATGAATTTGATAACTTTGTAAAACAACGATGAAACGGGAAATTTAGAAAAAAACATCTGTTGTGTACAGATTTGAACAAAACGAAGAGGTTGAAGGAATTTCTTTCTATTTCTCTTCCCCGTCCTTTTCCTTCGTTTTACTCATTTCTTATTCTTAAACGAAATAGTGTTTTGAGTTGCGAACATTTGACAAATTGGACGATGGAAACGAAGAAAAAAGAGGAGGAGACAAAGAAAAAAAAACAGAATCCCAGTGAAAATGATTCGTTTTGTTTTCTAGTGGAATTAAAGAGGAAACAACATTTTTGATAGAATGAATGACAGGTTCGCACAACCAAYCTCTAAATTAGTAATAACAAATAGCTTTAAAAATTTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGGACGACAGCTGTACGCAGAGTGTCATTAAGCGTTGTACACCGTTACGGTAGAATGCATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTTCGTTTTACTCATTTCTT</pcr_primer_p1>
		<pcr_primer_p2>TACCATTTCACAATTTTCCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>TCCTTCGTTTTACTCATTTCTTATTCTTAAACGAAATAGTGTTTTGAGTTGCGAACATTTGACAAATTGGACGATGGAAACGAAGAAAAAAGAGGAGGAGACAAAGAAAAAAAAACAGAATCCCAGTGAAAATGATTCGTTTTGTTTTCTAGTGGAATTAAAGAGGAAACAACATTTTTGATAGAATGAATGACAGGTTCGCACAACCAACCTCTAAATTAGTAATAACAAATAGCTTTAAAAATTTTAGGAAAATTGTGAAATGGTA</canonical_amplicon>
		<polymorphic_amplicon>TCCTTCGTTTTACTCATTTCTTATTCTTAAACGAAATAGTGTTTTGAGTTGCGAACATTTGACAAATTGGACGATGGAAACGAAGAAAAAAGAGGAGGAGACAAAGAAAAAAAAACAGAATCCCAGTGAAAATGATTCGTTTTGTTTTCTAGTGGAATTAAAGAGGAAACAACATTTTTGATAGAATGAATGACAGGTTCGCACAACCAAYCTCTAAATTAGTAATAACAAATAGCTTTAAAAATTTTAGGAAAATTGTGAAATGGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36877</snp_id>
        <super_contig>c011601162.Contig1</super_contig>
        <contig_pos>8481</contig_pos>
        <strand>+</strand>
        <context>TTATACGATC[A/T]TTTGTCAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAAAAATTTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATC</left_flank>
        <right_flank>TTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTTTAAAAAAAGTCGCTCAAAATTATGGTAAAGCTTTTCAAAGTTTTAGGAGATTCTGAGAATTTCGACTGATTAAATTCAATATGAATTTGATAACTTTGTAAAACAACGATGAAACGGGAAATTTAGAAAAAAACATCTGTTGTGTACAGATTTGAACAAAACGAAGAGGTTGAAGGAATTTCTTTCTATTTCTCTTCCCCGTCCTTTTCCTTCGTTTTACTCATTTCTTATTCTTAAACGAAATAGTGTTTTGAGTTGCGAACATTTGACAAATTGGACGATGGAAACGAAGAAAAAAGAGGAGGAGACAAAGAAAAAAAAACAGAATCCCAGTGAAAATGATTCGTTTTGTTTTCTAGTGGAATTAAAGAGGAAACAACATTTTTGATAGAATGAATGACAGGTTCGCACAACCAACCTCTAAATTAGTAATAACAAATAGCTTTAAAAATTTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGGACGACAGCTGTACGCAGAGTGTCATTAAGCGTTGTACACCGTTACGGTAGAATGCATACCCTGGCTACAAAAATCCTACTAAAAATCTCCTATCCCCCCAACTTTAAAACATGACCCCTGTTGTTCTGCGCTTTCT</canonical>
            <polymorphic>GACTTTAAAAAAAGTCGCTCAAAATTATGGTAAAGCTTTTCAAAGTTTTAGGAGATTCTGAGAATTTCGACTGATTAAATTCAATATGAATTTGATAACTTTGTAAAACAACGATGAAACGGGAAATTTAGAAAAAAACATCTGTTGTGTACAGATTTGAACAAAACGAAGAGGTTGAAGGAATTTCTTTCTATTTCTCTTCCCCGTCCTTTTCCTTCGTTTTACTCATTTCTTATTCTTAAACGAAATAGTGTTTTGAGTTGCGAACATTTGACAAATTGGACGATGGAAACGAAGAAAAAAGAGGAGGAGACAAAGAAAAAAAAACAGAATCCCAGTGAAAATGATTCGTTTTGTTTTCTAGTGGAATTAAAGAGGAAACAACATTTTTGATAGAATGAATGACAGGTTCGCACAACCAACCTCTAAATTAGTAATAACAAATAGCTTTAAAAATTTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCWTTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGGACGACAGCTGTACGCAGAGTGTCATTAAGCGTTGTACACCGTTACGGTAGAATGCATACCCTGGCTACAAAAATCCTACTAAAAATCTCCTATCCCCCCAACTTTAAAACATGACCCCTGTTGTTCTGCGCTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGATAGAATGAATGACAGGTTC</pcr_primer_p1>
		<pcr_primer_p2>CCTCACCCTTATGTTTACCAC</pcr_primer_p2>
		<pcr_amplicon_size>475</pcr_amplicon_size>
		<canonical_amplicon>TTGATAGAATGAATGACAGGTTCGCACAACCAACCTCTAAATTAGTAATAACAAATAGCTTTAAAAATTTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGG</canonical_amplicon>
		<polymorphic_amplicon>TTGATAGAATGAATGACAGGTTCGCACAACCAACCTCTAAATTAGTAATAACAAATAGCTTTAAAAATTTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCWTTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36878</snp_id>
        <super_contig>c011601162.Contig1</super_contig>
        <contig_pos>8509</contig_pos>
        <strand>+</strand>
        <context>TATTTCAGAA[A/G]GTTTGTGGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAA</left_flank>
        <right_flank>GTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTAAAGCTTTTCAAAGTTTTAGGAGATTCTGAGAATTTCGACTGATTAAATTCAATATGAATTTGATAACTTTGTAAAACAACGATGAAACGGGAAATTTAGAAAAAAACATCTGTTGTGTACAGATTTGAACAAAACGAAGAGGTTGAAGGAATTTCTTTCTATTTCTCTTCCCCGTCCTTTTCCTTCGTTTTACTCATTTCTTATTCTTAAACGAAATAGTGTTTTGAGTTGCGAACATTTGACAAATTGGACGATGGAAACGAAGAAAAAAGAGGAGGAGACAAAGAAAAAAAAACAGAATCCCAGTGAAAATGATTCGTTTTGTTTTCTAGTGGAATTAAAGAGGAAACAACATTTTTGATAGAATGAATGACAGGTTCGCACAACCAACCTCTAAATTAGTAATAACAAATAGCTTTAAAAATTTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGGACGACAGCTGTACGCAGAGTGTCATTAAGCGTTGTACACCGTTACGGTAGAATGCATACCCTGGCTACAAAAATCCTACTAAAAATCTCCTATCCCCCCAACTTTAAAACATGACCCCTGTTGTTCTGCGCTTTCTTTTTTTTCTAATTTCAAGGACCGTTTCC</canonical>
            <polymorphic>GGTAAAGCTTTTCAAAGTTTTAGGAGATTCTGAGAATTTCGACTGATTAAATTCAATATGAATTTGATAACTTTGTAAAACAACGATGAAACGGGAAATTTAGAAAAAAACATCTGTTGTGTACAGATTTGAACAAAACGAAGAGGTTGAAGGAATTTCTTTCTATTTCTCTTCCCCGTCCTTTTCCTTCGTTTTACTCATTTCTTATTCTTAAACGAAATAGTGTTTTGAGTTGCGAACATTTGACAAATTGGACGATGGAAACGAAGAAAAAAGAGGAGGAGACAAAGAAAAAAAAACAGAATCCCAGTGAAAATGATTCGTTTTGTTTTCTAGTGGAATTAAAGAGGAAACAACATTTTTGATAGAATGAATGACAGGTTCGCACAACCAACCTCTAAATTAGTAATAACAAATAGCTTTAAAAATTTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAARGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGGACGACAGCTGTACGCAGAGTGTCATTAAGCGTTGTACACCGTTACGGTAGAATGCATACCCTGGCTACAAAAATCCTACTAAAAATCTCCTATCCCCCCAACTTTAAAACATGACCCCTGTTGTTCTGCGCTTTCTTTTTTTTCTAATTTCAAGGACCGTTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAGGAAAATTGTGAAATGGT</pcr_primer_p1>
		<pcr_primer_p2>CCTCACCCTTATGTTTACCAC</pcr_primer_p2>
		<pcr_amplicon_size>407</pcr_amplicon_size>
		<canonical_amplicon>TTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGG</canonical_amplicon>
		<polymorphic_amplicon>TTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAARGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36879</snp_id>
        <super_contig>c011601162.Contig1</super_contig>
        <contig_pos>8527</contig_pos>
        <strand>+</strand>
        <context>GGTCTGAAAG[A/T]TAAATTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAG</left_flank>
        <right_flank>TAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAGGAGATTCTGAGAATTTCGACTGATTAAATTCAATATGAATTTGATAACTTTGTAAAACAACGATGAAACGGGAAATTTAGAAAAAAACATCTGTTGTGTACAGATTTGAACAAAACGAAGAGGTTGAAGGAATTTCTTTCTATTTCTCTTCCCCGTCCTTTTCCTTCGTTTTACTCATTTCTTATTCTTAAACGAAATAGTGTTTTGAGTTGCGAACATTTGACAAATTGGACGATGGAAACGAAGAAAAAAGAGGAGGAGACAAAGAAAAAAAAACAGAATCCCAGTGAAAATGATTCGTTTTGTTTTCTAGTGGAATTAAAGAGGAAACAACATTTTTGATAGAATGAATGACAGGTTCGCACAACCAACCTCTAAATTAGTAATAACAAATAGCTTTAAAAATTTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGGACGACAGCTGTACGCAGAGTGTCATTAAGCGTTGTACACCGTTACGGTAGAATGCATACCCTGGCTACAAAAATCCTACTAAAAATCTCCTATCCCCCCAACTTTAAAACATGACCCCTGTTGTTCTGCGCTTTCTTTTTTTTCTAATTTCAAGGACCGTTTCCTGAAGTACCAGAATTTCC</canonical>
            <polymorphic>TTTAGGAGATTCTGAGAATTTCGACTGATTAAATTCAATATGAATTTGATAACTTTGTAAAACAACGATGAAACGGGAAATTTAGAAAAAAACATCTGTTGTGTACAGATTTGAACAAAACGAAGAGGTTGAAGGAATTTCTTTCTATTTCTCTTCCCCGTCCTTTTCCTTCGTTTTACTCATTTCTTATTCTTAAACGAAATAGTGTTTTGAGTTGCGAACATTTGACAAATTGGACGATGGAAACGAAGAAAAAAGAGGAGGAGACAAAGAAAAAAAAACAGAATCCCAGTGAAAATGATTCGTTTTGTTTTCTAGTGGAATTAAAGAGGAAACAACATTTTTGATAGAATGAATGACAGGTTCGCACAACCAACCTCTAAATTAGTAATAACAAATAGCTTTAAAAATTTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGWTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGGACGACAGCTGTACGCAGAGTGTCATTAAGCGTTGTACACCGTTACGGTAGAATGCATACCCTGGCTACAAAAATCCTACTAAAAATCTCCTATCCCCCCAACTTTAAAACATGACCCCTGTTGTTCTGCGCTTTCTTTTTTTTCTAATTTCAAGGACCGTTTCCTGAAGTACCAGAATTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>164 146 131 108 96 80 79 78 50 39 29</canonical_bands>
                <polymorphic_bands>204 164 146 131 80 79 78 50 39 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAGGAAAATTGTGAAATGGT</pcr_primer_p1>
		<pcr_primer_p2>CCTCACCCTTATGTTTACCAC</pcr_primer_p2>
		<pcr_amplicon_size>407</pcr_amplicon_size>
		<canonical_amplicon>TTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGG</canonical_amplicon>
		<polymorphic_amplicon>TTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGWTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36880</snp_id>
        <super_contig>c011601162.Contig1</super_contig>
        <contig_pos>8566</contig_pos>
        <strand>+</strand>
        <context>TCTTTTCGGT[A/G]CTGAGTTTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGT</left_flank>
        <right_flank>CTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAATTTGATAACTTTGTAAAACAACGATGAAACGGGAAATTTAGAAAAAAACATCTGTTGTGTACAGATTTGAACAAAACGAAGAGGTTGAAGGAATTTCTTTCTATTTCTCTTCCCCGTCCTTTTCCTTCGTTTTACTCATTTCTTATTCTTAAACGAAATAGTGTTTTGAGTTGCGAACATTTGACAAATTGGACGATGGAAACGAAGAAAAAAGAGGAGGAGACAAAGAAAAAAAAACAGAATCCCAGTGAAAATGATTCGTTTTGTTTTCTAGTGGAATTAAAGAGGAAACAACATTTTTGATAGAATGAATGACAGGTTCGCACAACCAACCTCTAAATTAGTAATAACAAATAGCTTTAAAAATTTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGGACGACAGCTGTACGCAGAGTGTCATTAAGCGTTGTACACCGTTACGGTAGAATGCATACCCTGGCTACAAAAATCCTACTAAAAATCTCCTATCCCCCCAACTTTAAAACATGACCCCTGTTGTTCTGCGCTTTCTTTTTTTTCTAATTTCAAGGACCGTTTCCTGAAGTACCAGAATTTCCTAATTATCAAAAAATAAATTGTAAATTTGAAACTTCCTT</canonical>
            <polymorphic>ATGAATTTGATAACTTTGTAAAACAACGATGAAACGGGAAATTTAGAAAAAAACATCTGTTGTGTACAGATTTGAACAAAACGAAGAGGTTGAAGGAATTTCTTTCTATTTCTCTTCCCCGTCCTTTTCCTTCGTTTTACTCATTTCTTATTCTTAAACGAAATAGTGTTTTGAGTTGCGAACATTTGACAAATTGGACGATGGAAACGAAGAAAAAAGAGGAGGAGACAAAGAAAAAAAAACAGAATCCCAGTGAAAATGATTCGTTTTGTTTTCTAGTGGAATTAAAGAGGAAACAACATTTTTGATAGAATGAATGACAGGTTCGCACAACCAACCTCTAAATTAGTAATAACAAATAGCTTTAAAAATTTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTRCTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGGACGACAGCTGTACGCAGAGTGTCATTAAGCGTTGTACACCGTTACGGTAGAATGCATACCCTGGCTACAAAAATCCTACTAAAAATCTCCTATCCCCCCAACTTTAAAACATGACCCCTGTTGTTCTGCGCTTTCTTTTTTTTCTAATTTCAAGGACCGTTTCCTGAAGTACCAGAATTTCCTAATTATCAAAAAATAAATTGTAAATTTGAAACTTCCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>434 291 135 65 51 24</canonical_bands>
                <polymorphic_bands>725 135 65 51 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAGGAAAATTGTGAAATGGT</pcr_primer_p1>
		<pcr_primer_p2>CCTCACCCTTATGTTTACCAC</pcr_primer_p2>
		<pcr_amplicon_size>407</pcr_amplicon_size>
		<canonical_amplicon>TTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGG</canonical_amplicon>
		<polymorphic_amplicon>TTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTRCTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36881</snp_id>
        <super_contig>c011601162.Contig1</super_contig>
        <contig_pos>8584</contig_pos>
        <strand>+</strand>
        <context>TTGACAAGAA[G/T]ATTTATAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAA</left_flank>
        <right_flank>ATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAACAACGATGAAACGGGAAATTTAGAAAAAAACATCTGTTGTGTACAGATTTGAACAAAACGAAGAGGTTGAAGGAATTTCTTTCTATTTCTCTTCCCCGTCCTTTTCCTTCGTTTTACTCATTTCTTATTCTTAAACGAAATAGTGTTTTGAGTTGCGAACATTTGACAAATTGGACGATGGAAACGAAGAAAAAAGAGGAGGAGACAAAGAAAAAAAAACAGAATCCCAGTGAAAATGATTCGTTTTGTTTTCTAGTGGAATTAAAGAGGAAACAACATTTTTGATAGAATGAATGACAGGTTCGCACAACCAACCTCTAAATTAGTAATAACAAATAGCTTTAAAAATTTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGGACGACAGCTGTACGCAGAGTGTCATTAAGCGTTGTACACCGTTACGGTAGAATGCATACCCTGGCTACAAAAATCCTACTAAAAATCTCCTATCCCCCCAACTTTAAAACATGACCCCTGTTGTTCTGCGCTTTCTTTTTTTTCTAATTTCAAGGACCGTTTCCTGAAGTACCAGAATTTCCTAATTATCAAAAAATAAATTGTAAATTTGAAACTTCCTTATGTTCATTCCTCGTTTC</canonical>
            <polymorphic>TAAAACAACGATGAAACGGGAAATTTAGAAAAAAACATCTGTTGTGTACAGATTTGAACAAAACGAAGAGGTTGAAGGAATTTCTTTCTATTTCTCTTCCCCGTCCTTTTCCTTCGTTTTACTCATTTCTTATTCTTAAACGAAATAGTGTTTTGAGTTGCGAACATTTGACAAATTGGACGATGGAAACGAAGAAAAAAGAGGAGGAGACAAAGAAAAAAAAACAGAATCCCAGTGAAAATGATTCGTTTTGTTTTCTAGTGGAATTAAAGAGGAAACAACATTTTTGATAGAATGAATGACAGGTTCGCACAACCAACCTCTAAATTAGTAATAACAAATAGCTTTAAAAATTTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAAKATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGGACGACAGCTGTACGCAGAGTGTCATTAAGCGTTGTACACCGTTACGGTAGAATGCATACCCTGGCTACAAAAATCCTACTAAAAATCTCCTATCCCCCCAACTTTAAAACATGACCCCTGTTGTTCTGCGCTTTCTTTTTTTTCTAATTTCAAGGACCGTTTCCTGAAGTACCAGAATTTCCTAATTATCAAAAAATAAATTGTAAATTTGAAACTTCCTTATGTTCATTCCTCGTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAGGAAAATTGTGAAATGGT</pcr_primer_p1>
		<pcr_primer_p2>CCTCACCCTTATGTTTACCAC</pcr_primer_p2>
		<pcr_amplicon_size>407</pcr_amplicon_size>
		<canonical_amplicon>TTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGG</canonical_amplicon>
		<polymorphic_amplicon>TTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAAKATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36882</snp_id>
        <super_contig>c011601162.Contig1</super_contig>
        <contig_pos>8613</contig_pos>
        <strand>+</strand>
        <context>ATTGTTGTCA[A/T]GAATGATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCA</left_flank>
        <right_flank>GAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAACATCTGTTGTGTACAGATTTGAACAAAACGAAGAGGTTGAAGGAATTTCTTTCTATTTCTCTTCCCCGTCCTTTTCCTTCGTTTTACTCATTTCTTATTCTTAAACGAAATAGTGTTTTGAGTTGCGAACATTTGACAAATTGGACGATGGAAACGAAGAAAAAAGAGGAGGAGACAAAGAAAAAAAAACAGAATCCCAGTGAAAATGATTCGTTTTGTTTTCTAGTGGAATTAAAGAGGAAACAACATTTTTGATAGAATGAATGACAGGTTCGCACAACCAACCTCTAAATTAGTAATAACAAATAGCTTTAAAAATTTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGGACGACAGCTGTACGCAGAGTGTCATTAAGCGTTGTACACCGTTACGGTAGAATGCATACCCTGGCTACAAAAATCCTACTAAAAATCTCCTATCCCCCCAACTTTAAAACATGACCCCTGTTGTTCTGCGCTTTCTTTTTTTTCTAATTTCAAGGACCGTTTCCTGAAGTACCAGAATTTCCTAATTATCAAAAAATAAATTGTAAATTTGAAACTTCCTTATGTTCATTCCTCGTTTCAATTCGAAAATTCAAATATTCTATTTAGT</canonical>
            <polymorphic>AAAAAACATCTGTTGTGTACAGATTTGAACAAAACGAAGAGGTTGAAGGAATTTCTTTCTATTTCTCTTCCCCGTCCTTTTCCTTCGTTTTACTCATTTCTTATTCTTAAACGAAATAGTGTTTTGAGTTGCGAACATTTGACAAATTGGACGATGGAAACGAAGAAAAAAGAGGAGGAGACAAAGAAAAAAAAACAGAATCCCAGTGAAAATGATTCGTTTTGTTTTCTAGTGGAATTAAAGAGGAAACAACATTTTTGATAGAATGAATGACAGGTTCGCACAACCAACCTCTAAATTAGTAATAACAAATAGCTTTAAAAATTTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCAWGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGGACGACAGCTGTACGCAGAGTGTCATTAAGCGTTGTACACCGTTACGGTAGAATGCATACCCTGGCTACAAAAATCCTACTAAAAATCTCCTATCCCCCCAACTTTAAAACATGACCCCTGTTGTTCTGCGCTTTCTTTTTTTTCTAATTTCAAGGACCGTTTCCTGAAGTACCAGAATTTCCTAATTATCAAAAAATAAATTGTAAATTTGAAACTTCCTTATGTTCATTCCTCGTTTCAATTCGAAAATTCAAATATTCTATTTAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>498 260 158 84</canonical_bands>
                <polymorphic_bands>582 260 158</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAGGAAAATTGTGAAATGGT</pcr_primer_p1>
		<pcr_primer_p2>CCTCACCCTTATGTTTACCAC</pcr_primer_p2>
		<pcr_amplicon_size>407</pcr_amplicon_size>
		<canonical_amplicon>TTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGG</canonical_amplicon>
		<polymorphic_amplicon>TTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCAWGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36883</snp_id>
        <super_contig>c011601162.Contig1</super_contig>
        <contig_pos>8629</contig_pos>
        <strand>+</strand>
        <context>ATTTTATCCA[A/G]TCCTATTAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCA</left_flank>
        <right_flank>TCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACAGATTTGAACAAAACGAAGAGGTTGAAGGAATTTCTTTCTATTTCTCTTCCCCGTCCTTTTCCTTCGTTTTACTCATTTCTTATTCTTAAACGAAATAGTGTTTTGAGTTGCGAACATTTGACAAATTGGACGATGGAAACGAAGAAAAAAGAGGAGGAGACAAAGAAAAAAAAACAGAATCCCAGTGAAAATGATTCGTTTTGTTTTCTAGTGGAATTAAAGAGGAAACAACATTTTTGATAGAATGAATGACAGGTTCGCACAACCAACCTCTAAATTAGTAATAACAAATAGCTTTAAAAATTTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGGACGACAGCTGTACGCAGAGTGTCATTAAGCGTTGTACACCGTTACGGTAGAATGCATACCCTGGCTACAAAAATCCTACTAAAAATCTCCTATCCCCCCAACTTTAAAACATGACCCCTGTTGTTCTGCGCTTTCTTTTTTTTCTAATTTCAAGGACCGTTTCCTGAAGTACCAGAATTTCCTAATTATCAAAAAATAAATTGTAAATTTGAAACTTCCTTATGTTCATTCCTCGTTTCAATTCGAAAATTCAAATATTCTATTTAGTTTACCGAAGTCCTGAA</canonical>
            <polymorphic>GTACAGATTTGAACAAAACGAAGAGGTTGAAGGAATTTCTTTCTATTTCTCTTCCCCGTCCTTTTCCTTCGTTTTACTCATTTCTTATTCTTAAACGAAATAGTGTTTTGAGTTGCGAACATTTGACAAATTGGACGATGGAAACGAAGAAAAAAGAGGAGGAGACAAAGAAAAAAAAACAGAATCCCAGTGAAAATGATTCGTTTTGTTTTCTAGTGGAATTAAAGAGGAAACAACATTTTTGATAGAATGAATGACAGGTTCGCACAACCAACCTCTAAATTAGTAATAACAAATAGCTTTAAAAATTTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCARTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGGACGACAGCTGTACGCAGAGTGTCATTAAGCGTTGTACACCGTTACGGTAGAATGCATACCCTGGCTACAAAAATCCTACTAAAAATCTCCTATCCCCCCAACTTTAAAACATGACCCCTGTTGTTCTGCGCTTTCTTTTTTTTCTAATTTCAAGGACCGTTTCCTGAAGTACCAGAATTTCCTAATTATCAAAAAATAAATTGTAAATTTGAAACTTCCTTATGTTCATTCCTCGTTTCAATTCGAAAATTCAAATATTCTATTTAGTTTACCGAAGTCCTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAGGAAAATTGTGAAATGGT</pcr_primer_p1>
		<pcr_primer_p2>CCTCACCCTTATGTTTACCAC</pcr_primer_p2>
		<pcr_amplicon_size>407</pcr_amplicon_size>
		<canonical_amplicon>TTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGG</canonical_amplicon>
		<polymorphic_amplicon>TTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCARTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36884</snp_id>
        <super_contig>c011601162.Contig1</super_contig>
        <contig_pos>8651</contig_pos>
        <strand>+</strand>
        <context>TTGGAAATAA[C/T]GCTACAAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAA</left_flank>
        <right_flank>GCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGTTGAAGGAATTTCTTTCTATTTCTCTTCCCCGTCCTTTTCCTTCGTTTTACTCATTTCTTATTCTTAAACGAAATAGTGTTTTGAGTTGCGAACATTTGACAAATTGGACGATGGAAACGAAGAAAAAAGAGGAGGAGACAAAGAAAAAAAAACAGAATCCCAGTGAAAATGATTCGTTTTGTTTTCTAGTGGAATTAAAGAGGAAACAACATTTTTGATAGAATGAATGACAGGTTCGCACAACCAACCTCTAAATTAGTAATAACAAATAGCTTTAAAAATTTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGGACGACAGCTGTACGCAGAGTGTCATTAAGCGTTGTACACCGTTACGGTAGAATGCATACCCTGGCTACAAAAATCCTACTAAAAATCTCCTATCCCCCCAACTTTAAAACATGACCCCTGTTGTTCTGCGCTTTCTTTTTTTTCTAATTTCAAGGACCGTTTCCTGAAGTACCAGAATTTCCTAATTATCAAAAAATAAATTGTAAATTTGAAACTTCCTTATGTTCATTCCTCGTTTCAATTCGAAAATTCAAATATTCTATTTAGTTTACCGAAGTCCTGAAATGTTTAGATGAAAAAATAACA</canonical>
            <polymorphic>GAGGTTGAAGGAATTTCTTTCTATTTCTCTTCCCCGTCCTTTTCCTTCGTTTTACTCATTTCTTATTCTTAAACGAAATAGTGTTTTGAGTTGCGAACATTTGACAAATTGGACGATGGAAACGAAGAAAAAAGAGGAGGAGACAAAGAAAAAAAAACAGAATCCCAGTGAAAATGATTCGTTTTGTTTTCTAGTGGAATTAAAGAGGAAACAACATTTTTGATAGAATGAATGACAGGTTCGCACAACCAACCTCTAAATTAGTAATAACAAATAGCTTTAAAAATTTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAAYGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGGACGACAGCTGTACGCAGAGTGTCATTAAGCGTTGTACACCGTTACGGTAGAATGCATACCCTGGCTACAAAAATCCTACTAAAAATCTCCTATCCCCCCAACTTTAAAACATGACCCCTGTTGTTCTGCGCTTTCTTTTTTTTCTAATTTCAAGGACCGTTTCCTGAAGTACCAGAATTTCCTAATTATCAAAAAATAAATTGTAAATTTGAAACTTCCTTATGTTCATTCCTCGTTTCAATTCGAAAATTCAAATATTCTATTTAGTTTACCGAAGTCCTGAAATGTTTAGATGAAAAAATAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAGGAAAATTGTGAAATGGT</pcr_primer_p1>
		<pcr_primer_p2>CCTCACCCTTATGTTTACCAC</pcr_primer_p2>
		<pcr_amplicon_size>407</pcr_amplicon_size>
		<canonical_amplicon>TTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAACGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGG</canonical_amplicon>
		<polymorphic_amplicon>TTTAGGAAAATTGTGAAATGGTAAAAAATTCGTTATACGATCATTTGTCAAACTTCTAAGTATTTCAGAAGGTTTGTGGGTCTGAAAGTTAAATTTTTCCTAGGAAATGTCTAGAATTCTTTTCGGTACTGAGTTTTGACAAGAATATTTATAAAAAAGAGAGAATTGTTGTCATGAATGATTTTATCCAGTCCTATTAATGTTGGAAATAAYGCTACAAATATGAGATTTTACATTAAAAAAAAGGGGGAGGGGGCATGAAAAAAAAATGTTCTAGAAATTCCATTAAAATGTGCCCTCGAGGAGTTGAGCTTGTCGAGGGGAGTATTGAAGGTGCGGCACCGCTACCGACTGAACCACAGGGGAAAAGGAGGAGCGGGCGCCTGGTGGTAAACATAAGGGTGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36885</snp_id>
        <super_contig>c011701042.Contig2</super_contig>
        <contig_pos>8445</contig_pos>
        <strand></strand>
        <context>tgaaatcttg[T/G]tcattgccta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CATGGTGTAAAAATTGAAATCTAGGCGATGACCTAAAAATTGAAATCTTG</left_flank>
        <right_flank>TCATTGCCTAGAATTGAAATCTAGGTCATGGCCTAAAATTGAAATCTAAG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAATGCAATACAAATCGACCATTCTGGAGTGTCTTTCGGGACAACTCTAGGACAATCTCAAATAGCATCCAACTCATAACGAAGAACAGCGAAATTAAAAGGAATTGAATTAGATATCTGGAAATTTTAGATTATAATCTTTAAATAAAAATGTTTTTCAACTAACTTAATATCCTGTTTTTGACGGCTATTGCTGGTGATTGAGCTCATACTGCTACTAGCCTCTCGGATTTTTTGGAATATCGAACCGTAGCAGAAAACAGAGACCACTAGGGAAGTGATGCCATGAGCGATTATCATGTAGTTGGTGTAGGGGATTTCGCCTTCGATTCGCGCCAGAACATATGACATTGCTTGGTGATCAGTTATGAATCTGTAAAAATTGAAATCTAGGTCATGGCCTGAAAATTGGAACTTAGGTCATGACGAAAAAACTGGAATCTAGGTCATGGTGTAAAAATTGAAATCTAGGCGATGACCTAAAAATTGAAATCTTGTTCATTGCCTAGAATTGAAATCTAGGTCATGGCCTAAAATTGAAATCTAAGTCATGGCCTAAAAATTGAAATCTAGGTCATGACGAAAAAACTGGAATCTAGGTCATGGTCTAAAAATTGAAATCTAGGCGATGACCTGAAAATTGAAATCTAGGTCATTGCCTAGAATTGAAATCTAGGTCATGGCCTAAAATTGAAATCTAAGTCATGGCCTGAACATTGAATTCTAGGTCATGGCCTAAAATTGAAATCTAAGTCATTGGCTAAACATTGAAATCTAGGTCATGACCTAAAAATTGAAATTATTCATCATAGTATTACCAGTATTTTATTAGTCGACGACAGATTTTTGATATCTCTTATAGGAAGAGAACAAATACGGTAAGAATGACGAGTTTCGATCCAGAGACTACACTGTACATTAGACGTCTGGGGTTTTTACGGCGTCAATTTTCAAAACAAAGGTCTTAACACAGTCAAATTAGGTGACATTTTGTAGAT</canonical>
            <polymorphic>AGAAATGCAATACAAATCGACCATTCTGGAGTGTCTTTCGGGACAACTCTAGGACAATCTCAAATAGCATCCAACTCATAACGAAGAACAGCGAAATTAAAAGGAATTGAATTAGATATCTGGAAATTTTAGATTATAATCTTTAAATAAAAATGTTTTTCAACTAACTTAATATCCTGTTTTTGACGGCTATTGCTGGTGATTGAGCTCATACTGCTACTAGCCTCTCGGATTTTTTGGAATATCGAACCGTAGCAGAAAACAGAGACCACTAGGGAAGTGATGCCATGAGCGATTATCATGTAGTTGGTGTAGGGGATTTCGCCTTCGATTCGCGCCAGAACATATGACATTGCTTGGTGATCAGTTATGAATCTGTAAAAATTGAAATCTAGGTCATGGCCTGAAAATTGGAACTTAGGTCATGACGAAAAAACTGGAATCTAGGTCATGGTGTAAAAATTGAAATCTAGGCGATGACCTAAAAATTGAAATCTTGKTCATTGCCTAGAATTGAAATCTAGGTCATGGCCTAAAATTGAAATCTAAGTCATGGCCTAAAAATTGAAATCTAGGTCATGACGAAAAAACTGGAATCTAGGTCATGGTCTAAAAATTGAAATCTAGGCGATGACCTGAAAATTGAAATCTAGGTCATTGCCTAGAATTGAAATCTAGGTCATGGCCTAAAATTGAAATCTAAGTCATGGCCTGAACATTGAATTCTAGGTCATGGCCTAAAATTGAAATCTAAGTCATTGGCTAAACATTGAAATCTAGGTCATGACCTAAAAATTGAAATTATTCATCATAGTATTACCAGTATTTTATTAGTCGACGACAGATTTTTGATATCTCTTATAGGAAGAGAACAAATACGGTAAGAATGACGAGTTTCGATCCAGAGACTACACTGTACATTAGACGTCTGGGGTTTTTACGGCGTCAATTTTCAAAACAAAGGTCTTAACACAGTCAAATTAGGTGACATTTTGTAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTGGTGATCAGTTATGAATC</pcr_primer_p1>
		<pcr_primer_p2>TCGTCATTCTTACCGTATTTG</pcr_primer_p2>
		<pcr_amplicon_size>539</pcr_amplicon_size>
		<canonical_amplicon>GCTTGGTGATCAGTTATGAATCTGTAAAAATTGAAATCTAGGTCATGGCCTGAAAATTGGAACTTAGGTCATGACGAAAAAACTGGAATCTAGGTCATGGTGTAAAAATTGAAATCTAGGCGATGACCTAAAAATTGAAATCTTGTTCATTGCCTAGAATTGAAATCTAGGTCATGGCCTAAAATTGAAATCTAAGTCATGGCCTAAAAATTGAAATCTAGGTCATGACGAAAAAACTGGAATCTAGGTCATGGTCTAAAAATTGAAATCTAGGCGATGACCTGAAAATTGAAATCTAGGTCATTGCCTAGAATTGAAATCTAGGTCATGGCCTAAAATTGAAATCTAAGTCATGGCCTGAACATTGAATTCTAGGTCATGGCCTAAAATTGAAATCTAAGTCATTGGCTAAACATTGAAATCTAGGTCATGACCTAAAAATTGAAATTATTCATCATAGTATTACCAGTATTTTATTAGTCGACGACAGATTTTTGATATCTCTTATAGGAAGAGAACAAATACGGTAAGAATGACGA</canonical_amplicon>
		<polymorphic_amplicon>GCTTGGTGATCAGTTATGAATCTGTAAAAATTGAAATCTAGGTCATGGCCTGAAAATTGGAACTTAGGTCATGACGAAAAAACTGGAATCTAGGTCATGGTGTAAAAATTGAAATCTAGGCGATGACCTAAAAATTGAAATCTTGKTCATTGCCTAGAATTGAAATCTAGGTCATGGCCTAAAATTGAAATCTAAGTCATGGCCTAAAAATTGAAATCTAGGTCATGACGAAAAAACTGGAATCTAGGTCATGGTCTAAAAATTGAAATCTAGGCGATGACCTGAAAATTGAAATCTAGGTCATTGCCTAGAATTGAAATCTAGGTCATGGCCTAAAATTGAAATCTAAGTCATGGCCTGAACATTGAATTCTAGGTCATGGCCTAAAATTGAAATCTAAGTCATTGGCTAAACATTGAAATCTAGGTCATGACCTAAAAATTGAAATTATTCATCATAGTATTACCAGTATTTTATTAGTCGACGACAGATTTTTGATATCTCTTATAGGAAGAGAACAAATACGGTAAGAATGACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36887</snp_id>
        <super_contig>c011701042.Contig2</super_contig>
        <contig_pos>13142</contig_pos>
        <strand></strand>
        <context>cgaaggcgca[T/C]cagccaactg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCGAAGTGACGAATAGTAAAAGATATAGATTAAATCGCGCCGAAGGCGCA</left_flank>
        <right_flank>CAGCCAACTGTTTGAAGCGCCGGAGGCGCGGAAAACAGGCTGGTAAAAAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACCGCGACATTTTTGAACCGCGACGTTTCAGAACCGCGACGTTTTAGAACCGCGACATTTTTGAGCCGCGACGTTTCAGAACCGCGACGTTTTAGAACCGCGACATTTTTGAAGCGCGACGTTTCAGAACCGCGACATTTTTGAAGCGCGACGTTTCAGAACCGCGACGTTTTTGAACTGACTATTTTAAAACTGTTGCGAACTGTCAAAAAACTAGTGAAACAGCAGAAAAAAACATTTCTGTAGTCCTCGAGGAAAATAAAAATTTTAGCGAAAATTTACCGGTAACTTACCGGTAATTTACCGGTAAAATACAGGGTCTGAAAGTTATAAATTTTTGAAATTCTCACATTTTTTCAAATATACATTTTTATCCTGTTCTCGATTTACTCTGTTAACGTACGCATAAAATGGGAATACAAGTTGAGATTTGAAAAAAAAAGAGGAGCGAAGTGACGAATAGTAAAAGATATAGATTAAATCGCGCCGAAGGCGCATCAGCCAACTGTTTGAAGCGCCGGAGGCGCGGAAAACAGGCTGGTAAAAACAAAAAATGGAGCAATCAGAAAAGCATTGGAAATTTTTTAGAATATTAAAAAATTCCGTGATCCAGTGCACACGTCCATTAATTCAGGAAAAGCGCACAACGGAGATTGCTGGCGCTTTTCTTATGCATCGATTAAAAAGGACAATTCAAAAAGTTCAAAAAAATTTTGTTCGTGAACCGACTTAGTGATGGATTTGAGAGTCTAGGCATCACTTTTTCACGATATTTATACTCATCCAATTTCCAATTATTCGCTGATTGCAAAAATCCAGTTCTCATAAAACTATGATTAGTTTGAACGAAGTTCTAAAGCTAAACATAGAGGTGGGGGGGGGGGGGGGGGCGCACTTATCGTCTGTGTATCTCACGCCAGAAATACAGAAAGGGGAATACATTTTGCTTCATATCTCATTTCAGAGTAATTTAATTTCTATAAAAATTACATATTTGG</canonical>
            <polymorphic>GAACCGCGACATTTTTGAACCGCGACGTTTCAGAACCGCGACGTTTTAGAACCGCGACATTTTTGAGCCGCGACGTTTCAGAACCGCGACGTTTTAGAACCGCGACATTTTTGAAGCGCGACGTTTCAGAACCGCGACATTTTTGAAGCGCGACGTTTCAGAACCGCGACGTTTTTGAACTGACTATTTTAAAACTGTTGCGAACTGTCAAAAAACTAGTGAAACAGCAGAAAAAAACATTTCTGTAGTCCTCGAGGAAAATAAAAATTTTAGCGAAAATTTACCGGTAACTTACCGGTAATTTACCGGTAAAATACAGGGTCTGAAAGTTATAAATTTTTGAAATTCTCACATTTTTTCAAATATACATTTTTATCCTGTTCTCGATTTACTCTGTTAACGTACGCATAAAATGGGAATACAAGTTGAGATTTGAAAAAAAAAGAGGAGCGAAGTGACGAATAGTAAAAGATATAGATTAAATCGCGCCGAAGGCGCAYCAGCCAACTGTTTGAAGCGCCGGAGGCGCGGAAAACAGGCTGGTAAAAACAAAAAATGGAGCAATCAGAAAAGCATTGGAAATTTTTTAGAATATTAAAAAATTCCGTGATCCAGTGCACACGTCCATTAATTCAGGAAAAGCGCACAACGGAGATTGCTGGCGCTTTTCTTATGCATCGATTAAAAAGGACAATTCAAAAAGTTCAAAAAAATTTTGTTCGTGAACCGACTTAGTGATGGATTTGAGAGTCTAGGCATCACTTTTTCACGATATTTATACTCATCCAATTTCCAATTATTCGCTGATTGCAAAAATCCAGTTCTCATAAAACTATGATTAGTTTGAACGAAGTTCTAAAGCTAAACATAGAGGTGGGGGGGGGGGGGGGGGCGCACTTATCGTCTGTGTATCTCACGCCAGAAATACAGAAAGGGGAATACATTTTGCTTCATATCTCATTTCAGAGTAATTTAATTTCTATAAAAATTACATATTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTATCCTGTTCTCGATTTAC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTTCCAATGCTTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>218</pcr_amplicon_size>
		<canonical_amplicon>TTTTTATCCTGTTCTCGATTTACTCTGTTAACGTACGCATAAAATGGGAATACAAGTTGAGATTTGAAAAAAAAAGAGGAGCGAAGTGACGAATAGTAAAAGATATAGATTAAATCGCGCCGAAGGCGCATCAGCCAACTGTTTGAAGCGCCGGAGGCGCGGAAAACAGGCTGGTAAAAACAAAAAATGGAGCAATCAGAAAAGCATTGGAAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTATCCTGTTCTCGATTTACTCTGTTAACGTACGCATAAAATGGGAATACAAGTTGAGATTTGAAAAAAAAAGAGGAGCGAAGTGACGAATAGTAAAAGATATAGATTAAATCGCGCCGAAGGCGCAYCAGCCAACTGTTTGAAGCGCCGGAGGCGCGGAAAACAGGCTGGTAAAAACAAAAAATGGAGCAATCAGAAAAGCATTGGAAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36888</snp_id>
        <super_contig>c011701042.Contig2</super_contig>
        <contig_pos>13190</contig_pos>
        <strand>+</strand>
        <context>ggctggtAAA[A/G]ACAAAAAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATCAGCCAACTGTTTGAAGCGCCGGAGGCGCGGAAAACAGGCTGGTAAA</left_flank>
        <right_flank>ACAAAAAATGGAGCAATCAGAAAAGCATTGGAAATTTTTTAGAATATTAA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACCGCGACATTTTTGAGCCGCGACGTTTCAGAACCGCGACGTTTTAGAACCGCGACATTTTTGAAGCGCGACGTTTCAGAACCGCGACATTTTTGAAGCGCGACGTTTCAGAACCGCGACGTTTTTGAACTGACTATTTTAAAACTGTTGCGAACTGTCAAAAAACTAGTGAAACAGCAGAAAAAAACATTTCTGTAGTCCTCGAGGAAAATAAAAATTTTAGCGAAAATTTACCGGTAACTTACCGGTAATTTACCGGTAAAATACAGGGTCTGAAAGTTATAAATTTTTGAAATTCTCACATTTTTTCAAATATACATTTTTATCCTGTTCTCGATTTACTCTGTTAACGTACGCATAAAATGGGAATACAAGTTGAGATTTGAAAAAAAAAGAGGAGCGAAGTGACGAATAGTAAAAGATATAGATTAAATCGCGCCGAAGGCGCATCAGCCAACTGTTTGAAGCGCCGGAGGCGCGGAAAACAGGCTGGTAAAAACAAAAAATGGAGCAATCAGAAAAGCATTGGAAATTTTTTAGAATATTAAAAAATTCCGTGATCCAGTGCACACGTCCATTAATTCAGGAAAAGCGCACAACGGAGATTGCTGGCGCTTTTCTTATGCATCGATTAAAAAGGACAATTCAAAAAGTTCAAAAAAATTTTGTTCGTGAACCGACTTAGTGATGGATTTGAGAGTCTAGGCATCACTTTTTCACGATATTTATACTCATCCAATTTCCAATTATTCGCTGATTGCAAAAATCCAGTTCTCATAAAACTATGATTAGTTTGAACGAAGTTCTAAAGCTAAACATAGAGGTGGGGGGGGGGGGGGGGGCGCACTTATCGTCTGTGTATCTCACGCCAGAAATACAGAAAGGGGAATACATTTTGCTTCATATCTCATTTCAGAGTAATTTAATTTCTATAAAAATTACATATTTGGAATCAGCAAAACAAGCCAATTCTTTTGAACATAAATACGTAGCTAACA</canonical>
            <polymorphic>GAACCGCGACATTTTTGAGCCGCGACGTTTCAGAACCGCGACGTTTTAGAACCGCGACATTTTTGAAGCGCGACGTTTCAGAACCGCGACATTTTTGAAGCGCGACGTTTCAGAACCGCGACGTTTTTGAACTGACTATTTTAAAACTGTTGCGAACTGTCAAAAAACTAGTGAAACAGCAGAAAAAAACATTTCTGTAGTCCTCGAGGAAAATAAAAATTTTAGCGAAAATTTACCGGTAACTTACCGGTAATTTACCGGTAAAATACAGGGTCTGAAAGTTATAAATTTTTGAAATTCTCACATTTTTTCAAATATACATTTTTATCCTGTTCTCGATTTACTCTGTTAACGTACGCATAAAATGGGAATACAAGTTGAGATTTGAAAAAAAAAGAGGAGCGAAGTGACGAATAGTAAAAGATATAGATTAAATCGCGCCGAAGGCGCATCAGCCAACTGTTTGAAGCGCCGGAGGCGCGGAAAACAGGCTGGTAAARACAAAAAATGGAGCAATCAGAAAAGCATTGGAAATTTTTTAGAATATTAAAAAATTCCGTGATCCAGTGCACACGTCCATTAATTCAGGAAAAGCGCACAACGGAGATTGCTGGCGCTTTTCTTATGCATCGATTAAAAAGGACAATTCAAAAAGTTCAAAAAAATTTTGTTCGTGAACCGACTTAGTGATGGATTTGAGAGTCTAGGCATCACTTTTTCACGATATTTATACTCATCCAATTTCCAATTATTCGCTGATTGCAAAAATCCAGTTCTCATAAAACTATGATTAGTTTGAACGAAGTTCTAAAGCTAAACATAGAGGTGGGGGGGGGGGGGGGGGCGCACTTATCGTCTGTGTATCTCACGCCAGAAATACAGAAAGGGGAATACATTTTGCTTCATATCTCATTTCAGAGTAATTTAATTTCTATAAAAATTACATATTTGGAATCAGCAAAACAAGCCAATTCTTTTGAACATAAATACGTAGCTAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTGTTCTCGATTTACTCTGTTA</pcr_primer_p1>
		<pcr_primer_p2>TTGGAAATTGGATGAGTATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>420</pcr_amplicon_size>
		<canonical_amplicon>CCTGTTCTCGATTTACTCTGTTAACGTACGCATAAAATGGGAATACAAGTTGAGATTTGAAAAAAAAAGAGGAGCGAAGTGACGAATAGTAAAAGATATAGATTAAATCGCGCCGAAGGCGCATCAGCCAACTGTTTGAAGCGCCGGAGGCGCGGAAAACAGGCTGGTAAAAACAAAAAATGGAGCAATCAGAAAAGCATTGGAAATTTTTTAGAATATTAAAAAATTCCGTGATCCAGTGCACACGTCCATTAATTCAGGAAAAGCGCACAACGGAGATTGCTGGCGCTTTTCTTATGCATCGATTAAAAAGGACAATTCAAAAAGTTCAAAAAAATTTTGTTCGTGAACCGACTTAGTGATGGATTTGAGAGTCTAGGCATCACTTTTTCACGATATTTATACTCATCCAATTTCCAA</canonical_amplicon>
		<polymorphic_amplicon>CCTGTTCTCGATTTACTCTGTTAACGTACGCATAAAATGGGAATACAAGTTGAGATTTGAAAAAAAAAGAGGAGCGAAGTGACGAATAGTAAAAGATATAGATTAAATCGCGCCGAAGGCGCATCAGCCAACTGTTTGAAGCGCCGGAGGCGCGGAAAACAGGCTGGTAAARACAAAAAATGGAGCAATCAGAAAAGCATTGGAAATTTTTTAGAATATTAAAAAATTCCGTGATCCAGTGCACACGTCCATTAATTCAGGAAAAGCGCACAACGGAGATTGCTGGCGCTTTTCTTATGCATCGATTAAAAAGGACAATTCAAAAAGTTCAAAAAAATTTTGTTCGTGAACCGACTTAGTGATGGATTTGAGAGTCTAGGCATCACTTTTTCACGATATTTATACTCATCCAATTTCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36889</snp_id>
        <super_contig>c011701044.Contig3</super_contig>
        <contig_pos>3740</contig_pos>
        <strand></strand>
        <context>TTTTTCAAGT[C/T]GGGAGACTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATATTTTCTGATAATTTGAAATATCATCAGATTGAATTTTTTTCAAGT</left_flank>
        <right_flank>GGGAGACTTTTTGATTAGTAATTCCATTAATCCTTCTGTTGCTGTGTACT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTAATGGGGCTTTCTCTTGATCACAAATATACATTTTTGCTAGTAAAATAGCTCGCGTCATTTATCTATGATTTATAACATGAAATAAAATAACATAACTTTGTATAACATTACATACCAATATTCAAATATATAACTCCTAAATCTTTCTTCCTGATCTTTTTCTGCCTAACTAGTTCATCCAAAATAGCATTAATTTTATTATACTCCCCATTGTTGCCTGCTTGAAATGAGGCGATGGATAGTCTTAAAGAATTTATAAGAGAGTTAGTATCTGATGGAATGAAGTTGAAACTTGGTTTTATGGAACTTCCGTCTACAGTAGATGTGTTTTTATCTTTTGTAACAAAGTAGTGCTTCTTAATAAATTTCCATTTGTCACTAGAATCGGAATTGTATTTTTTACTAGTGTTATCAAACCCTTGATACAAAGCATTTGAACAAAACAATATTTTCTGATAATTTGAAATATCATCAGATTGAATTTTTTTCAAGTCGGGAGACTTTTTGATTAGTAATTCCATTAATCCTTCTGTTGCTGTGTACTCTTCATTGTTGACTTTCAGAATGTTCTGATCAAAAGTAATTCCCTTATTACCTATAGTATACTTTTTCTCATCTTTGTTAAACTTGATTGAATACCCAGCATTACTTCTATCAGATCCATCTTGAAGATAACTAACAATTAGATTGCTGACTACTAAATTGGATGAAGAACTAGGTAGAGAGGGAGTTTCTTTTTGAATCGTATCGAGTGATTTCTTTTGAAGAATGGGAAGCTTTGATGTTGATGGTGCTGTAGTTTTTGAAGGTGCTATCGATAGTTGGGTAGGTACTTTGAAATTATTCAGTGTTTCGACTATTTTATTTTTCTCATCAATTATTTCTTCTTGAAGCTTTTTATTAGACTCCAAAATAGGTTTGAAGACATCTATCCTATGATCTTCTATATGTTCCAAATCTGATCGTTCCTGTAGATTTTTGATTTTGTGCTCTT</canonical>
            <polymorphic>TTTTTAATGGGGCTTTCTCTTGATCACAAATATACATTTTTGCTAGTAAAATAGCTCGCGTCATTTATCTATGATTTATAACATGAAATAAAATAACATAACTTTGTATAACATTACATACCAATATTCAAATATATAACTCCTAAATCTTTCTTCCTGATCTTTTTCTGCCTAACTAGTTCATCCAAAATAGCATTAATTTTATTATACTCCCCATTGTTGCCTGCTTGAAATGAGGCGATGGATAGTCTTAAAGAATTTATAAGAGAGTTAGTATCTGATGGAATGAAGTTGAAACTTGGTTTTATGGAACTTCCGTCTACAGTAGATGTGTTTTTATCTTTTGTAACAAAGTAGTGCTTCTTAATAAATTTCCATTTGTCACTAGAATCGGAATTGTATTTTTTACTAGTGTTATCAAACCCTTGATACAAAGCATTTGAACAAAACAATATTTTCTGATAATTTGAAATATCATCAGATTGAATTTTTTTCAAGTYGGGAGACTTTTTGATTAGTAATTCCATTAATCCTTCTGTTGCTGTGTACTCTTCATTGTTGACTTTCAGAATGTTCTGATCAAAAGTAATTCCCTTATTACCTATAGTATACTTTTTCTCATCTTTGTTAAACTTGATTGAATACCCAGCATTACTTCTATCAGATCCATCTTGAAGATAACTAACAATTAGATTGCTGACTACTAAATTGGATGAAGAACTAGGTAGAGAGGGAGTTTCTTTTTGAATCGTATCGAGTGATTTCTTTTGAAGAATGGGAAGCTTTGATGTTGATGGTGCTGTAGTTTTTGAAGGTGCTATCGATAGTTGGGTAGGTACTTTGAAATTATTCAGTGTTTCGACTATTTTATTTTTCTCATCAATTATTTCTTCTTGAAGCTTTTTATTAGACTCCAAAATAGGTTTGAAGACATCTATCCTATGATCTTCTATATGTTCCAAATCTGATCGTTCCTGTAGATTTTTGATTTTGTGCTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>344 222 171 137 107 19</canonical_bands>
                <polymorphic_bands>515 222 137 107 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATACAAAGCATTTGAACAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CTTCAAGATGGATCTGATAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATACAAAGCATTTGAACAAAACAATATTTTCTGATAATTTGAAATATCATCAGATTGAATTTTTTTCAAGTCGGGAGACTTTTTGATTAGTAATTCCATTAATCCTTCTGTTGCTGTGTACTCTTCATTGTTGACTTTCAGAATGTTCTGATCAAAAGTAATTCCCTTATTACCTATAGTATACTTTTTCTCATCTTTGTTAAACTTGATTGAATACCCAGCATTACTTCTATCAGATCCATCTTGAAG</canonical_amplicon>
		<polymorphic_amplicon>GATACAAAGCATTTGAACAAAACAATATTTTCTGATAATTTGAAATATCATCAGATTGAATTTTTTTCAAGTYGGGAGACTTTTTGATTAGTAATTCCATTAATCCTTCTGTTGCTGTGTACTCTTCATTGTTGACTTTCAGAATGTTCTGATCAAAAGTAATTCCCTTATTACCTATAGTATACTTTTTCTCATCTTTGTTAAACTTGATTGAATACCCAGCATTACTTCTATCAGATCCATCTTGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36890</snp_id>
        <super_contig>c011701044.Contig3</super_contig>
        <contig_pos>3825</contig_pos>
        <strand></strand>
        <context>TCTGATCAAA[A/G]GTAATTCCCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGTTGCTGTGTACTCTTCATTGTTGACTTTCAGAATGTTCTGATCAAA</left_flank>
        <right_flank>GTAATTCCCTTATTACCTATAGTATACTTTTTCTCATCTTTGTTAAACTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATAAAATAACATAACTTTGTATAACATTACATACCAATATTCAAATATATAACTCCTAAATCTTTCTTCCTGATCTTTTTCTGCCTAACTAGTTCATCCAAAATAGCATTAATTTTATTATACTCCCCATTGTTGCCTGCTTGAAATGAGGCGATGGATAGTCTTAAAGAATTTATAAGAGAGTTAGTATCTGATGGAATGAAGTTGAAACTTGGTTTTATGGAACTTCCGTCTACAGTAGATGTGTTTTTATCTTTTGTAACAAAGTAGTGCTTCTTAATAAATTTCCATTTGTCACTAGAATCGGAATTGTATTTTTTACTAGTGTTATCAAACCCTTGATACAAAGCATTTGAACAAAACAATATTTTCTGATAATTTGAAATATCATCAGATTGAATTTTTTTCAAGTCGGGAGACTTTTTGATTAGTAATTCCATTAATCCTTCTGTTGCTGTGTACTCTTCATTGTTGACTTTCAGAATGTTCTGATCAAAAGTAATTCCCTTATTACCTATAGTATACTTTTTCTCATCTTTGTTAAACTTGATTGAATACCCAGCATTACTTCTATCAGATCCATCTTGAAGATAACTAACAATTAGATTGCTGACTACTAAATTGGATGAAGAACTAGGTAGAGAGGGAGTTTCTTTTTGAATCGTATCGAGTGATTTCTTTTGAAGAATGGGAAGCTTTGATGTTGATGGTGCTGTAGTTTTTGAAGGTGCTATCGATAGTTGGGTAGGTACTTTGAAATTATTCAGTGTTTCGACTATTTTATTTTTCTCATCAATTATTTCTTCTTGAAGCTTTTTATTAGACTCCAAAATAGGTTTGAAGACATCTATCCTATGATCTTCTATATGTTCCAAATCTGATCGTTCCTGTAGATTTTTGATTTTGTGCTCTTTTCTATTCTTCAAAAACCCTTGAACGATGTCATTTCTCTTCTTAGGATCATAAATTTCGACTACAGAGACCATTTATTACTTAAA</canonical>
            <polymorphic>AAATAAAATAACATAACTTTGTATAACATTACATACCAATATTCAAATATATAACTCCTAAATCTTTCTTCCTGATCTTTTTCTGCCTAACTAGTTCATCCAAAATAGCATTAATTTTATTATACTCCCCATTGTTGCCTGCTTGAAATGAGGCGATGGATAGTCTTAAAGAATTTATAAGAGAGTTAGTATCTGATGGAATGAAGTTGAAACTTGGTTTTATGGAACTTCCGTCTACAGTAGATGTGTTTTTATCTTTTGTAACAAAGTAGTGCTTCTTAATAAATTTCCATTTGTCACTAGAATCGGAATTGTATTTTTTACTAGTGTTATCAAACCCTTGATACAAAGCATTTGAACAAAACAATATTTTCTGATAATTTGAAATATCATCAGATTGAATTTTTTTCAAGTCGGGAGACTTTTTGATTAGTAATTCCATTAATCCTTCTGTTGCTGTGTACTCTTCATTGTTGACTTTCAGAATGTTCTGATCAAARGTAATTCCCTTATTACCTATAGTATACTTTTTCTCATCTTTGTTAAACTTGATTGAATACCCAGCATTACTTCTATCAGATCCATCTTGAAGATAACTAACAATTAGATTGCTGACTACTAAATTGGATGAAGAACTAGGTAGAGAGGGAGTTTCTTTTTGAATCGTATCGAGTGATTTCTTTTGAAGAATGGGAAGCTTTGATGTTGATGGTGCTGTAGTTTTTGAAGGTGCTATCGATAGTTGGGTAGGTACTTTGAAATTATTCAGTGTTTCGACTATTTTATTTTTCTCATCAATTATTTCTTCTTGAAGCTTTTTATTAGACTCCAAAATAGGTTTGAAGACATCTATCCTATGATCTTCTATATGTTCCAAATCTGATCGTTCCTGTAGATTTTTGATTTTGTGCTCTTTTCTATTCTTCAAAAACCCTTGAACGATGTCATTTCTCTTCTTAGGATCATAAATTTCGACTACAGAGACCATTTATTACTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATACAAAGCATTTGAACAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CTTCAAGATGGATCTGATAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATACAAAGCATTTGAACAAAACAATATTTTCTGATAATTTGAAATATCATCAGATTGAATTTTTTTCAAGTCGGGAGACTTTTTGATTAGTAATTCCATTAATCCTTCTGTTGCTGTGTACTCTTCATTGTTGACTTTCAGAATGTTCTGATCAAAAGTAATTCCCTTATTACCTATAGTATACTTTTTCTCATCTTTGTTAAACTTGATTGAATACCCAGCATTACTTCTATCAGATCCATCTTGAAG</canonical_amplicon>
		<polymorphic_amplicon>GATACAAAGCATTTGAACAAAACAATATTTTCTGATAATTTGAAATATCATCAGATTGAATTTTTTTCAAGTCGGGAGACTTTTTGATTAGTAATTCCATTAATCCTTCTGTTGCTGTGTACTCTTCATTGTTGACTTTCAGAATGTTCTGATCAAARGTAATTCCCTTATTACCTATAGTATACTTTTTCTCATCTTTGTTAAACTTGATTGAATACCCAGCATTACTTCTATCAGATCCATCTTGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36891</snp_id>
        <super_contig>c011701044.Contig3</super_contig>
        <contig_pos>3978</contig_pos>
        <strand></strand>
        <context>GAGAGGGAGT[T/G]TCTTTTTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATTAGATTGCTGACTACTAAATTGGATGAAGAACTAGGTAGAGAGGGAGT</left_flank>
        <right_flank>TCTTTTTGAATCGTATCGAGTGATTTCTTTTGAAGAATGGGAAGCTTTGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATGGATAGTCTTAAAGAATTTATAAGAGAGTTAGTATCTGATGGAATGAAGTTGAAACTTGGTTTTATGGAACTTCCGTCTACAGTAGATGTGTTTTTATCTTTTGTAACAAAGTAGTGCTTCTTAATAAATTTCCATTTGTCACTAGAATCGGAATTGTATTTTTTACTAGTGTTATCAAACCCTTGATACAAAGCATTTGAACAAAACAATATTTTCTGATAATTTGAAATATCATCAGATTGAATTTTTTTCAAGTCGGGAGACTTTTTGATTAGTAATTCCATTAATCCTTCTGTTGCTGTGTACTCTTCATTGTTGACTTTCAGAATGTTCTGATCAAAAGTAATTCCCTTATTACCTATAGTATACTTTTTCTCATCTTTGTTAAACTTGATTGAATACCCAGCATTACTTCTATCAGATCCATCTTGAAGATAACTAACAATTAGATTGCTGACTACTAAATTGGATGAAGAACTAGGTAGAGAGGGAGTTTCTTTTTGAATCGTATCGAGTGATTTCTTTTGAAGAATGGGAAGCTTTGATGTTGATGGTGCTGTAGTTTTTGAAGGTGCTATCGATAGTTGGGTAGGTACTTTGAAATTATTCAGTGTTTCGACTATTTTATTTTTCTCATCAATTATTTCTTCTTGAAGCTTTTTATTAGACTCCAAAATAGGTTTGAAGACATCTATCCTATGATCTTCTATATGTTCCAAATCTGATCGTTCCTGTAGATTTTTGATTTTGTGCTCTTTTCTATTCTTCAAAAACCCTTGAACGATGTCATTTCTCTTCTTAGGATCATAAATTTCGACTACAGAGACCATTTATTACTTAAAAATTATATCATTATATTCACTCGTATTTCTTATGTAATAAATGGAAGTAGTAGATTACACTAAACATACCAGGGATCAACTACGTGTTATTTTACGTTCTAAGAAAACATTTAGCAATGCTGAAATTAGATCTATGAATATGAAAGAGCTTAT</canonical>
            <polymorphic>CGATGGATAGTCTTAAAGAATTTATAAGAGAGTTAGTATCTGATGGAATGAAGTTGAAACTTGGTTTTATGGAACTTCCGTCTACAGTAGATGTGTTTTTATCTTTTGTAACAAAGTAGTGCTTCTTAATAAATTTCCATTTGTCACTAGAATCGGAATTGTATTTTTTACTAGTGTTATCAAACCCTTGATACAAAGCATTTGAACAAAACAATATTTTCTGATAATTTGAAATATCATCAGATTGAATTTTTTTCAAGTCGGGAGACTTTTTGATTAGTAATTCCATTAATCCTTCTGTTGCTGTGTACTCTTCATTGTTGACTTTCAGAATGTTCTGATCAAAAGTAATTCCCTTATTACCTATAGTATACTTTTTCTCATCTTTGTTAAACTTGATTGAATACCCAGCATTACTTCTATCAGATCCATCTTGAAGATAACTAACAATTAGATTGCTGACTACTAAATTGGATGAAGAACTAGGTAGAGAGGGAGTKTCTTTTTGAATCGTATCGAGTGATTTCTTTTGAAGAATGGGAAGCTTTGATGTTGATGGTGCTGTAGTTTTTGAAGGTGCTATCGATAGTTGGGTAGGTACTTTGAAATTATTCAGTGTTTCGACTATTTTATTTTTCTCATCAATTATTTCTTCTTGAAGCTTTTTATTAGACTCCAAAATAGGTTTGAAGACATCTATCCTATGATCTTCTATATGTTCCAAATCTGATCGTTCCTGTAGATTTTTGATTTTGTGCTCTTTTCTATTCTTCAAAAACCCTTGAACGATGTCATTTCTCTTCTTAGGATCATAAATTTCGACTACAGAGACCATTTATTACTTAAAAATTATATCATTATATTCACTCGTATTTCTTATGTAATAAATGGAAGTAGTAGATTACACTAAACATACCAGGGATCAACTACGTGTTATTTTACGTTCTAAGAAAACATTTAGCAATGCTGAAATTAGATCTATGAATATGAAAGAGCTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTCATCTTTGTTAAACTTG</pcr_primer_p1>
		<pcr_primer_p2>CGAAACACTGAATAATTTCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTCATCTTTGTTAAACTTGATTGAATACCCAGCATTACTTCTATCAGATCCATCTTGAAGATAACTAACAATTAGATTGCTGACTACTAAATTGGATGAAGAACTAGGTAGAGAGGGAGTTTCTTTTTGAATCGTATCGAGTGATTTCTTTTGAAGAATGGGAAGCTTTGATGTTGATGGTGCTGTAGTTTTTGAAGGTGCTATCGATAGTTGGGTAGGTACTTTGAAATTATTCAGTGTTTCG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTCATCTTTGTTAAACTTGATTGAATACCCAGCATTACTTCTATCAGATCCATCTTGAAGATAACTAACAATTAGATTGCTGACTACTAAATTGGATGAAGAACTAGGTAGAGAGGGAGTKTCTTTTTGAATCGTATCGAGTGATTTCTTTTGAAGAATGGGAAGCTTTGATGTTGATGGTGCTGTAGTTTTTGAAGGTGCTATCGATAGTTGGGTAGGTACTTTGAAATTATTCAGTGTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36892</snp_id>
        <super_contig>c011701044.Contig3</super_contig>
        <contig_pos>4039</contig_pos>
        <strand></strand>
        <context>TGTTGATGGT[G/A]YTGTAGTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCGTATCGAGTGATTTCTTTTGAAGAATGGGAAGCTTTGATGTTGATGGT</left_flank>
        <right_flank>CTGTAGTTTTTGAAGGTGCTATCGATAGTTGGGTAGGTACTTTGAAATTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTTTTATGGAACTTCCGTCTACAGTAGATGTGTTTTTATCTTTTGTAACAAAGTAGTGCTTCTTAATAAATTTCCATTTGTCACTAGAATCGGAATTGTATTTTTTACTAGTGTTATCAAACCCTTGATACAAAGCATTTGAACAAAACAATATTTTCTGATAATTTGAAATATCATCAGATTGAATTTTTTTCAAGTCGGGAGACTTTTTGATTAGTAATTCCATTAATCCTTCTGTTGCTGTGTACTCTTCATTGTTGACTTTCAGAATGTTCTGATCAAAAGTAATTCCCTTATTACCTATAGTATACTTTTTCTCATCTTTGTTAAACTTGATTGAATACCCAGCATTACTTCTATCAGATCCATCTTGAAGATAACTAACAATTAGATTGCTGACTACTAAATTGGATGAAGAACTAGGTAGAGAGGGAGTTTCTTTTTGAATCGTATCGAGTGATTTCTTTTGAAGAATGGGAAGCTTTGATGTTGATGGTGCTGTAGTTTTTGAAGGTGCTATCGATAGTTGGGTAGGTACTTTGAAATTATTCAGTGTTTCGACTATTTTATTTTTCTCATCAATTATTTCTTCTTGAAGCTTTTTATTAGACTCCAAAATAGGTTTGAAGACATCTATCCTATGATCTTCTATATGTTCCAAATCTGATCGTTCCTGTAGATTTTTGATTTTGTGCTCTTTTCTATTCTTCAAAAACCCTTGAACGATGTCATTTCTCTTCTTAGGATCATAAATTTCGACTACAGAGACCATTTATTACTTAAAAATTATATCATTATATTCACTCGTATTTCTTATGTAATAAATGGAAGTAGTAGATTACACTAAACATACCAGGGATCAACTACGTGTTATTTTACGTTCTAAGAAAACATTTAGCAATGCTGAAATTAGATCTATGAATATGAAAGAGCTTATAAAAGCAATCGAGGAATCAGATAACAAACAAAATGCAGAAAACCAAGATGCTACTAATAAA</canonical>
            <polymorphic>TGGTTTTATGGAACTTCCGTCTACAGTAGATGTGTTTTTATCTTTTGTAACAAAGTAGTGCTTCTTAATAAATTTCCATTTGTCACTAGAATCGGAATTGTATTTTTTACTAGTGTTATCAAACCCTTGATACAAAGCATTTGAACAAAACAATATTTTCTGATAATTTGAAATATCATCAGATTGAATTTTTTTCAAGTCGGGAGACTTTTTGATTAGTAATTCCATTAATCCTTCTGTTGCTGTGTACTCTTCATTGTTGACTTTCAGAATGTTCTGATCAAAAGTAATTCCCTTATTACCTATAGTATACTTTTTCTCATCTTTGTTAAACTTGATTGAATACCCAGCATTACTTCTATCAGATCCATCTTGAAGATAACTAACAATTAGATTGCTGACTACTAAATTGGATGAAGAACTAGGTAGAGAGGGAGTTTCTTTTTGAATCGTATCGAGTGATTTCTTTTGAAGAATGGGAAGCTTTGATGTTGATGGTRCTGTAGTTTTTGAAGGTGCTATCGATAGTTGGGTAGGTACTTTGAAATTATTCAGTGTTTCGACTATTTTATTTTTCTCATCAATTATTTCTTCTTGAAGCTTTTTATTAGACTCCAAAATAGGTTTGAAGACATCTATCCTATGATCTTCTATATGTTCCAAATCTGATCGTTCCTGTAGATTTTTGATTTTGTGCTCTTTTCTATTCTTCAAAAACCCTTGAACGATGTCATTTCTCTTCTTAGGATCATAAATTTCGACTACAGAGACCATTTATTACTTAAAAATTATATCATTATATTCACTCGTATTTCTTATGTAATAAATGGAAGTAGTAGATTACACTAAACATACCAGGGATCAACTACGTGTTATTTTACGTTCTAAGAAAACATTTAGCAATGCTGAAATTAGATCTATGAATATGAAAGAGCTTATAAAAGCAATCGAGGAATCAGATAACAAACAAAATGCAGAAAACCAAGATGCTACTAATAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>214 139 132 128 109 40 39 39 34 30 27 26 25 18</canonical_bands>
                <polymorphic_bands>214 139 132 128 109 57 40 39 34 30 27 26 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCGTATCGAGTGATTTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>AGCACAAAATCAAAAATCTACAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATCGTATCGAGTGATTTCTTTTGAAGAATGGGAAGCTTTGATGTTGATGGTGCTGTAGTTTTTGAAGGTGCTATCGATAGTTGGGTAGGTACTTTGAAATTATTCAGTGTTTCGACTATTTTATTTTTCTCATCAATTATTTCTTCTTGAAGCTTTTTATTAGACTCCAAAATAGGTTTGAAGACATCTATCCTATGATCTTCTATATGTTCCAAATCTGATCGTTCCTGTAGATTTTTGATTTTGTGCT</canonical_amplicon>
		<polymorphic_amplicon>AATCGTATCGAGTGATTTCTTTTGAAGAATGGGAAGCTTTGATGTTGATGGTRCTGTAGTTTTTGAAGGTGCTATCGATAGTTGGGTAGGTACTTTGAAATTATTCAGTGTTTCGACTATTTTATTTTTCTCATCAATTATTTCTTCTTGAAGCTTTTTATTAGACTCCAAAATAGGTTTGAAGACATCTATCCTATGATCTTCTATATGTTCCAAATCTGATCGTTCCTGTAGATTTTTGATTTTGTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36893</snp_id>
        <super_contig>c011701044.Contig3</super_contig>
        <contig_pos>4040</contig_pos>
        <strand></strand>
        <context>GTTGATGGTR[C/T]TGTAGTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTATCGAGTGATTTCTTTTGAAGAATGGGAAGCTTTGATGTTGATGGTG</left_flank>
        <right_flank>TGTAGTTTTTGAAGGTGCTATCGATAGTTGGGTAGGTACTTTGAAATTAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTTTATGGAACTTCCGTCTACAGTAGATGTGTTTTTATCTTTTGTAACAAAGTAGTGCTTCTTAATAAATTTCCATTTGTCACTAGAATCGGAATTGTATTTTTTACTAGTGTTATCAAACCCTTGATACAAAGCATTTGAACAAAACAATATTTTCTGATAATTTGAAATATCATCAGATTGAATTTTTTTCAAGTCGGGAGACTTTTTGATTAGTAATTCCATTAATCCTTCTGTTGCTGTGTACTCTTCATTGTTGACTTTCAGAATGTTCTGATCAAAAGTAATTCCCTTATTACCTATAGTATACTTTTTCTCATCTTTGTTAAACTTGATTGAATACCCAGCATTACTTCTATCAGATCCATCTTGAAGATAACTAACAATTAGATTGCTGACTACTAAATTGGATGAAGAACTAGGTAGAGAGGGAGTTTCTTTTTGAATCGTATCGAGTGATTTCTTTTGAAGAATGGGAAGCTTTGATGTTGATGGTGCTGTAGTTTTTGAAGGTGCTATCGATAGTTGGGTAGGTACTTTGAAATTATTCAGTGTTTCGACTATTTTATTTTTCTCATCAATTATTTCTTCTTGAAGCTTTTTATTAGACTCCAAAATAGGTTTGAAGACATCTATCCTATGATCTTCTATATGTTCCAAATCTGATCGTTCCTGTAGATTTTTGATTTTGTGCTCTTTTCTATTCTTCAAAAACCCTTGAACGATGTCATTTCTCTTCTTAGGATCATAAATTTCGACTACAGAGACCATTTATTACTTAAAAATTATATCATTATATTCACTCGTATTTCTTATGTAATAAATGGAAGTAGTAGATTACACTAAACATACCAGGGATCAACTACGTGTTATTTTACGTTCTAAGAAAACATTTAGCAATGCTGAAATTAGATCTATGAATATGAAAGAGCTTATAAAAGCAATCGAGGAATCAGATAACAAACAAAATGCAGAAAACCAAGATGCTACTAATAAAG</canonical>
            <polymorphic>GGTTTTATGGAACTTCCGTCTACAGTAGATGTGTTTTTATCTTTTGTAACAAAGTAGTGCTTCTTAATAAATTTCCATTTGTCACTAGAATCGGAATTGTATTTTTTACTAGTGTTATCAAACCCTTGATACAAAGCATTTGAACAAAACAATATTTTCTGATAATTTGAAATATCATCAGATTGAATTTTTTTCAAGTCGGGAGACTTTTTGATTAGTAATTCCATTAATCCTTCTGTTGCTGTGTACTCTTCATTGTTGACTTTCAGAATGTTCTGATCAAAAGTAATTCCCTTATTACCTATAGTATACTTTTTCTCATCTTTGTTAAACTTGATTGAATACCCAGCATTACTTCTATCAGATCCATCTTGAAGATAACTAACAATTAGATTGCTGACTACTAAATTGGATGAAGAACTAGGTAGAGAGGGAGTTTCTTTTTGAATCGTATCGAGTGATTTCTTTTGAAGAATGGGAAGCTTTGATGTTGATGGTGYTGTAGTTTTTGAAGGTGCTATCGATAGTTGGGTAGGTACTTTGAAATTATTCAGTGTTTCGACTATTTTATTTTTCTCATCAATTATTTCTTCTTGAAGCTTTTTATTAGACTCCAAAATAGGTTTGAAGACATCTATCCTATGATCTTCTATATGTTCCAAATCTGATCGTTCCTGTAGATTTTTGATTTTGTGCTCTTTTCTATTCTTCAAAAACCCTTGAACGATGTCATTTCTCTTCTTAGGATCATAAATTTCGACTACAGAGACCATTTATTACTTAAAAATTATATCATTATATTCACTCGTATTTCTTATGTAATAAATGGAAGTAGTAGATTACACTAAACATACCAGGGATCAACTACGTGTTATTTTACGTTCTAAGAAAACATTTAGCAATGCTGAAATTAGATCTATGAATATGAAAGAGCTTATAAAAGCAATCGAGGAATCAGATAACAAACAAAATGCAGAAAACCAAGATGCTACTAATAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>282 239 198 175 86 20</canonical_bands>
                <polymorphic_bands>373 282 239 86 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCGTATCGAGTGATTTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>AGCACAAAATCAAAAATCTACAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATCGTATCGAGTGATTTCTTTTGAAGAATGGGAAGCTTTGATGTTGATGGTGCTGTAGTTTTTGAAGGTGCTATCGATAGTTGGGTAGGTACTTTGAAATTATTCAGTGTTTCGACTATTTTATTTTTCTCATCAATTATTTCTTCTTGAAGCTTTTTATTAGACTCCAAAATAGGTTTGAAGACATCTATCCTATGATCTTCTATATGTTCCAAATCTGATCGTTCCTGTAGATTTTTGATTTTGTGCT</canonical_amplicon>
		<polymorphic_amplicon>AATCGTATCGAGTGATTTCTTTTGAAGAATGGGAAGCTTTGATGTTGATGGTGYTGTAGTTTTTGAAGGTGCTATCGATAGTTGGGTAGGTACTTTGAAATTATTCAGTGTTTCGACTATTTTATTTTTCTCATCAATTATTTCTTCTTGAAGCTTTTTATTAGACTCCAAAATAGGTTTGAAGACATCTATCCTATGATCTTCTATATGTTCCAAATCTGATCGTTCCTGTAGATTTTTGATTTTGTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36894</snp_id>
        <super_contig>c011701044.Contig3</super_contig>
        <contig_pos>4881</contig_pos>
        <strand></strand>
        <context>TCAAAATCAA[G/A]GTAGAGGATC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCTTCGAGACAGTCAAATCAGTTTTGATAAACAGACTAGATCAAAATCAA</left_flank>
        <right_flank>GTAGAGGATCTGGTTTTAGACTTAATAGAATCATAGGTTTAAGAATGTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACTAAACATACCAGGGATCAACTACGTGTTATTTTACGTTCTAAGAAAACATTTAGCAATGCTGAAATTAGATCTATGAATATGAAAGAGCTTATAAAAGCAATCGAGGAATCAGATAACAAACAAAATGCAGAAAACCAAGATGCTACTAATAAAGAATCGAATCTTCAATTGCGAAATCTGTTTCCTTTCGATAATGCTGTTTTTAGTGAGTACAAAGAAGTGAAGATGTTTTGAGGGATACCGTTCACACAGGAAATTCTAATGATATACAGTCATTTCTAGCTAAAAAAGAATCTGATGTCTTAAAAGATGTTTACGATGATAGTGTGAAAATATATTTTTCTTTAACATGCGAAATGAAGAAAGAAGGAGCTGAGGAACTTCGTGTTGATCATTTGAATACAAAAAATGAAACATTACACAAGGGGGATGATAGGAAAGCCTTCTTCGAGACAGTCAAATCAGTTTTGATAAACAGACTAGATCAAAATCAAGGTAGAGGATCTGGTTTTAGACTTAATAGAATCATAGGTTTAAGAATGTTTCAAACTAGAATCAGACCATTATCAGGATCAAAATATATAGAACTACCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTATTTCCAGTAGAAGAAAACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGATTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTGTCAACATTCTCACTCATAATATTGAGGATAAAGAAAAAATAGATTCATATAAAGTATCCAGAAACATTAAAGTAGAAATAAATCGAGTCGTAAATCTTTTGCTGGTAACGGATAATTCTGGAGAAGGTCACTATTGTTTAATTAAGAATATAGATAGATTAATGAATAACAAAAATGGCACAAGA</canonical>
            <polymorphic>ACACTAAACATACCAGGGATCAACTACGTGTTATTTTACGTTCTAAGAAAACATTTAGCAATGCTGAAATTAGATCTATGAATATGAAAGAGCTTATAAAAGCAATCGAGGAATCAGATAACAAACAAAATGCAGAAAACCAAGATGCTACTAATAAAGAATCGAATCTTCAATTGCGAAATCTGTTTCCTTTCGATAATGCTGTTTTTAGTGAGTACAAAGAAGTGAAGATGTTTTGAGGGATACCGTTCACACAGGAAATTCTAATGATATACAGTCATTTCTAGCTAAAAAAGAATCTGATGTCTTAAAAGATGTTTACGATGATAGTGTGAAAATATATTTTTCTTTAACATGCGAAATGAAGAAAGAAGGAGCTGAGGAACTTCGTGTTGATCATTTGAATACAAAAAATGAAACATTACACAAGGGGGATGATAGGAAAGCCTTCTTCGAGACAGTCAAATCAGTTTTGATAAACAGACTAGATCAAAATCAARGTAGAGGATCTGGTTTTAGACTTAATAGAATCATAGGTTTAAGAATGTTTCAAACTAGAATCAGACCATTATCAGGATCAAAATATATAGAACTACCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTATTTCCAGTAGAAGAAAACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGATTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTGTCAACATTCTCACTCATAATATTGAGGATAAAGAAAAAATAGATTCATATAAAGTATCCAGAAACATTAAAGTAGAAATAAATCGAGTCGTAAATCTTTTGCTGGTAACGGATAATTCTGGAGAAGGTCACTATTGTTTAATTAAGAATATAGATAGATTAATGAATAACAAAAATGGCACAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTACACAAGGGGGATGATAG</pcr_primer_p1>
		<pcr_primer_p2>AAGATACACCACATGAAACACTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTACACAAGGGGGATGATAGGAAAGCCTTCTTCGAGACAGTCAAATCAGTTTTGATAAACAGACTAGATCAAAATCAAGGTAGAGGATCTGGTTTTAGACTTAATAGAATCATAGGTTTAAGAATGTTTCAAACTAGAATCAGACCATTATCAGGATCAAAATATATAGAACTACCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTT</canonical_amplicon>
		<polymorphic_amplicon>ATTACACAAGGGGGATGATAGGAAAGCCTTCTTCGAGACAGTCAAATCAGTTTTGATAAACAGACTAGATCAAAATCAARGTAGAGGATCTGGTTTTAGACTTAATAGAATCATAGGTTTAAGAATGTTTCAAACTAGAATCAGACCATTATCAGGATCAAAATATATAGAACTACCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36895</snp_id>
        <super_contig>c011701044.Contig3</super_contig>
        <contig_pos>4940</contig_pos>
        <strand></strand>
        <context>TTCAAACTAG[A/G]ATCAGACCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGGTTTTAGACTTAATAGAATCATAGGTTTAAGAATGTTTCAAACTAG</left_flank>
        <right_flank>ATCAGACCATTATCAGGATCAAAATATATAGAACTACCTGATTGGATTAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGCTGAAATTAGATCTATGAATATGAAAGAGCTTATAAAAGCAATCGAGGAATCAGATAACAAACAAAATGCAGAAAACCAAGATGCTACTAATAAAGAATCGAATCTTCAATTGCGAAATCTGTTTCCTTTCGATAATGCTGTTTTTAGTGAGTACAAAGAAGTGAAGATGTTTTGAGGGATACCGTTCACACAGGAAATTCTAATGATATACAGTCATTTCTAGCTAAAAAAGAATCTGATGTCTTAAAAGATGTTTACGATGATAGTGTGAAAATATATTTTTCTTTAACATGCGAAATGAAGAAAGAAGGAGCTGAGGAACTTCGTGTTGATCATTTGAATACAAAAAATGAAACATTACACAAGGGGGATGATAGGAAAGCCTTCTTCGAGACAGTCAAATCAGTTTTGATAAACAGACTAGATCAAAATCAAGGTAGAGGATCTGGTTTTAGACTTAATAGAATCATAGGTTTAAGAATGTTTCAAACTAGAATCAGACCATTATCAGGATCAAAATATATAGAACTACCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTATTTCCAGTAGAAGAAAACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGATTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTGTCAACATTCTCACTCATAATATTGAGGATAAAGAAAAAATAGATTCATATAAAGTATCCAGAAACATTAAAGTAGAAATAAATCGAGTCGTAAATCTTTTGCTGGTAACGGATAATTCTGGAGAAGGTCACTATTGTTTAATTAAGAATATAGATAGATTAATGAATAACAAAAATGGCACAAGAAATAAATTTTGTATTAGATGTCATAATAACTTTTTAACAAAAGAAAAATTTGAAAACCA</canonical>
            <polymorphic>AATGCTGAAATTAGATCTATGAATATGAAAGAGCTTATAAAAGCAATCGAGGAATCAGATAACAAACAAAATGCAGAAAACCAAGATGCTACTAATAAAGAATCGAATCTTCAATTGCGAAATCTGTTTCCTTTCGATAATGCTGTTTTTAGTGAGTACAAAGAAGTGAAGATGTTTTGAGGGATACCGTTCACACAGGAAATTCTAATGATATACAGTCATTTCTAGCTAAAAAAGAATCTGATGTCTTAAAAGATGTTTACGATGATAGTGTGAAAATATATTTTTCTTTAACATGCGAAATGAAGAAAGAAGGAGCTGAGGAACTTCGTGTTGATCATTTGAATACAAAAAATGAAACATTACACAAGGGGGATGATAGGAAAGCCTTCTTCGAGACAGTCAAATCAGTTTTGATAAACAGACTAGATCAAAATCAAGGTAGAGGATCTGGTTTTAGACTTAATAGAATCATAGGTTTAAGAATGTTTCAAACTAGRATCAGACCATTATCAGGATCAAAATATATAGAACTACCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTATTTCCAGTAGAAGAAAACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGATTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTGTCAACATTCTCACTCATAATATTGAGGATAAAGAAAAAATAGATTCATATAAAGTATCCAGAAACATTAAAGTAGAAATAAATCGAGTCGTAAATCTTTTGCTGGTAACGGATAATTCTGGAGAAGGTCACTATTGTTTAATTAAGAATATAGATAGATTAATGAATAACAAAAATGGCACAAGAAATAAATTTTGTATTAGATGTCATAATAACTTTTTAACAAAAGAAAAATTTGAAAACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>299 232 159 132 52 48 43 30 5</canonical_bands>
                <polymorphic_bands>329 232 159 132 52 48 43 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>299 232 202 132 52 48 30 5</canonical_bands>
                <polymorphic_bands>329 232 202 132 52 48 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTACACAAGGGGGATGATAG</pcr_primer_p1>
		<pcr_primer_p2>AAGATACACCACATGAAACACTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTACACAAGGGGGATGATAGGAAAGCCTTCTTCGAGACAGTCAAATCAGTTTTGATAAACAGACTAGATCAAAATCAAGGTAGAGGATCTGGTTTTAGACTTAATAGAATCATAGGTTTAAGAATGTTTCAAACTAGAATCAGACCATTATCAGGATCAAAATATATAGAACTACCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTT</canonical_amplicon>
		<polymorphic_amplicon>ATTACACAAGGGGGATGATAGGAAAGCCTTCTTCGAGACAGTCAAATCAGTTTTGATAAACAGACTAGATCAAAATCAAGGTAGAGGATCTGGTTTTAGACTTAATAGAATCATAGGTTTAAGAATGTTTCAAACTAGRATCAGACCATTATCAGGATCAAAATATATAGAACTACCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36896</snp_id>
        <super_contig>c011701044.Contig3</super_contig>
        <contig_pos>5016</contig_pos>
        <strand></strand>
        <context>AATCAATATA[A/C]AAAATAAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATATAGAACTACCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATA</left_flank>
        <right_flank>AAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACCAAGATGCTACTAATAAAGAATCGAATCTTCAATTGCGAAATCTGTTTCCTTTCGATAATGCTGTTTTTAGTGAGTACAAAGAAGTGAAGATGTTTTGAGGGATACCGTTCACACAGGAAATTCTAATGATATACAGTCATTTCTAGCTAAAAAAGAATCTGATGTCTTAAAAGATGTTTACGATGATAGTGTGAAAATATATTTTTCTTTAACATGCGAAATGAAGAAAGAAGGAGCTGAGGAACTTCGTGTTGATCATTTGAATACAAAAAATGAAACATTACACAAGGGGGATGATAGGAAAGCCTTCTTCGAGACAGTCAAATCAGTTTTGATAAACAGACTAGATCAAAATCAAGGTAGAGGATCTGGTTTTAGACTTAATAGAATCATAGGTTTAAGAATGTTTCAAACTAGAATCAGACCATTATCAGGATCAAAATATATAGAACTACCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTATTTCCAGTAGAAGAAAACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGATTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTGTCAACATTCTCACTCATAATATTGAGGATAAAGAAAAAATAGATTCATATAAAGTATCCAGAAACATTAAAGTAGAAATAAATCGAGTCGTAAATCTTTTGCTGGTAACGGATAATTCTGGAGAAGGTCACTATTGTTTAATTAAGAATATAGATAGATTAATGAATAACAAAAATGGCACAAGAAATAAATTTTGTATTAGATGTCATAATAACTTTTTAACAAAAGAAAAATTTGAAAACCATTTAAACGACTGTAGGAGTAATTCTCCAATCCAAATGATCAAACCTTCAAAAGATTATATTCAGTTTGATGGGATT</canonical>
            <polymorphic>AAAACCAAGATGCTACTAATAAAGAATCGAATCTTCAATTGCGAAATCTGTTTCCTTTCGATAATGCTGTTTTTAGTGAGTACAAAGAAGTGAAGATGTTTTGAGGGATACCGTTCACACAGGAAATTCTAATGATATACAGTCATTTCTAGCTAAAAAAGAATCTGATGTCTTAAAAGATGTTTACGATGATAGTGTGAAAATATATTTTTCTTTAACATGCGAAATGAAGAAAGAAGGAGCTGAGGAACTTCGTGTTGATCATTTGAATACAAAAAATGAAACATTACACAAGGGGGATGATAGGAAAGCCTTCTTCGAGACAGTCAAATCAGTTTTGATAAACAGACTAGATCAAAATCAAGGTAGAGGATCTGGTTTTAGACTTAATAGAATCATAGGTTTAAGAATGTTTCAAACTAGAATCAGACCATTATCAGGATCAAAATATATAGAACTACCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAMAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTATTTCCAGTAGAAGAAAACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGATTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTGTCAACATTCTCACTCATAATATTGAGGATAAAGAAAAAATAGATTCATATAAAGTATCCAGAAACATTAAAGTAGAAATAAATCGAGTCGTAAATCTTTTGCTGGTAACGGATAATTCTGGAGAAGGTCACTATTGTTTAATTAAGAATATAGATAGATTAATGAATAACAAAAATGGCACAAGAAATAAATTTTGTATTAGATGTCATAATAACTTTTTAACAAAAGAAAAATTTGAAAACCATTTAAACGACTGTAGGAGTAATTCTCCAATCCAAATGATCAAACCTTCAAAAGATTATATTCAGTTTGATGGGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGACCATTATCAGGATCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCTCAAACCTATCCACATCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>AGACCATTATCAGGATCAAAATATATAGAACTACCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTATTTCCAGTAGAAGAAAACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGATTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGA</canonical_amplicon>
		<polymorphic_amplicon>AGACCATTATCAGGATCAAAATATATAGAACTACCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAMAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTATTTCCAGTAGAAGAAAACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGATTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36897</snp_id>
        <super_contig>c011701044.Contig3</super_contig>
        <contig_pos>5057</contig_pos>
        <strand></strand>
        <context>GTATCTTAGC[T/A]CATTTRTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGC</left_flank>
        <right_flank>CATTTATTTCCAGTAGAAGAAAACTCCGAGCGAGTAGCTAAATATAAATA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAAATCTGTTTCCTTTCGATAATGCTGTTTTTAGTGAGTACAAAGAAGTGAAGATGTTTTGAGGGATACCGTTCACACAGGAAATTCTAATGATATACAGTCATTTCTAGCTAAAAAAGAATCTGATGTCTTAAAAGATGTTTACGATGATAGTGTGAAAATATATTTTTCTTTAACATGCGAAATGAAGAAAGAAGGAGCTGAGGAACTTCGTGTTGATCATTTGAATACAAAAAATGAAACATTACACAAGGGGGATGATAGGAAAGCCTTCTTCGAGACAGTCAAATCAGTTTTGATAAACAGACTAGATCAAAATCAAGGTAGAGGATCTGGTTTTAGACTTAATAGAATCATAGGTTTAAGAATGTTTCAAACTAGAATCAGACCATTATCAGGATCAAAATATATAGAACTACCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTATTTCCAGTAGAAGAAAACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGATTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTGTCAACATTCTCACTCATAATATTGAGGATAAAGAAAAAATAGATTCATATAAAGTATCCAGAAACATTAAAGTAGAAATAAATCGAGTCGTAAATCTTTTGCTGGTAACGGATAATTCTGGAGAAGGTCACTATTGTTTAATTAAGAATATAGATAGATTAATGAATAACAAAAATGGCACAAGAAATAAATTTTGTATTAGATGTCATAATAACTTTTTAACAAAAGAAAAATTTGAAAACCATTTAAACGACTGTAGGAGTAATTCTCCAATCCAAATGATCAAACCTTCAAAAGATTATATTCAGTTTGATGGGATTCAGAAAACTCAGAAACACAGATATGTTTGCTATGCAGATTT</canonical>
            <polymorphic>CGAAATCTGTTTCCTTTCGATAATGCTGTTTTTAGTGAGTACAAAGAAGTGAAGATGTTTTGAGGGATACCGTTCACACAGGAAATTCTAATGATATACAGTCATTTCTAGCTAAAAAAGAATCTGATGTCTTAAAAGATGTTTACGATGATAGTGTGAAAATATATTTTTCTTTAACATGCGAAATGAAGAAAGAAGGAGCTGAGGAACTTCGTGTTGATCATTTGAATACAAAAAATGAAACATTACACAAGGGGGATGATAGGAAAGCCTTCTTCGAGACAGTCAAATCAGTTTTGATAAACAGACTAGATCAAAATCAAGGTAGAGGATCTGGTTTTAGACTTAATAGAATCATAGGTTTAAGAATGTTTCAAACTAGAATCAGACCATTATCAGGATCAAAATATATAGAACTACCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCWCATTTATTTCCAGTAGAAGAAAACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGATTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTGTCAACATTCTCACTCATAATATTGAGGATAAAGAAAAAATAGATTCATATAAAGTATCCAGAAACATTAAAGTAGAAATAAATCGAGTCGTAAATCTTTTGCTGGTAACGGATAATTCTGGAGAAGGTCACTATTGTTTAATTAAGAATATAGATAGATTAATGAATAACAAAAATGGCACAAGAAATAAATTTTGTATTAGATGTCATAATAACTTTTTAACAAAAGAAAAATTTGAAAACCATTTAAACGACTGTAGGAGTAATTCTCCAATCCAAATGATCAAACCTTCAAAAGATTATATTCAGTTTGATGGGATTCAGAAAACTCAGAAACACAGATATGTTTGCTATGCAGATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>364 297 111 99 90 39</canonical_bands>
                <polymorphic_bands>364 336 111 99 90</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>364 228 111 99 90 69 39</canonical_bands>
                <polymorphic_bands>364 267 111 99 90 69</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTGATTGGATTAAAAATAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCCTCAATATTATGAGTGAGAATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTATTTCCAGTAGAAGAAAACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGATTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTGTCAACATTCTCACTCATAATATTGAGGA</canonical_amplicon>
		<polymorphic_amplicon>CCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCWCATTTATTTCCAGTAGAAGAAAACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGATTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTGTCAACATTCTCACTCATAATATTGAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36898</snp_id>
        <super_contig>c011701044.Contig3</super_contig>
        <contig_pos>5063</contig_pos>
        <strand></strand>
        <context>TAGCWCATTT[A/G]TTTCCAGTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTT</left_flank>
        <right_flank>TTTCCAGTAGAAGAAAACTCCGAGCGAGTAGCTAAATATAAATATCATGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTTTCCTTTCGATAATGCTGTTTTTAGTGAGTACAAAGAAGTGAAGATGTTTTGAGGGATACCGTTCACACAGGAAATTCTAATGATATACAGTCATTTCTAGCTAAAAAAGAATCTGATGTCTTAAAAGATGTTTACGATGATAGTGTGAAAATATATTTTTCTTTAACATGCGAAATGAAGAAAGAAGGAGCTGAGGAACTTCGTGTTGATCATTTGAATACAAAAAATGAAACATTACACAAGGGGGATGATAGGAAAGCCTTCTTCGAGACAGTCAAATCAGTTTTGATAAACAGACTAGATCAAAATCAAGGTAGAGGATCTGGTTTTAGACTTAATAGAATCATAGGTTTAAGAATGTTTCAAACTAGAATCAGACCATTATCAGGATCAAAATATATAGAACTACCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTATTTCCAGTAGAAGAAAACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGATTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTGTCAACATTCTCACTCATAATATTGAGGATAAAGAAAAAATAGATTCATATAAAGTATCCAGAAACATTAAAGTAGAAATAAATCGAGTCGTAAATCTTTTGCTGGTAACGGATAATTCTGGAGAAGGTCACTATTGTTTAATTAAGAATATAGATAGATTAATGAATAACAAAAATGGCACAAGAAATAAATTTTGTATTAGATGTCATAATAACTTTTTAACAAAAGAAAAATTTGAAAACCATTTAAACGACTGTAGGAGTAATTCTCCAATCCAAATGATCAAACCTTCAAAAGATTATATTCAGTTTGATGGGATTCAGAAAACTCAGAAACACAGATATGTTTGCTATGCAGATTTTGAATC</canonical>
            <polymorphic>CTGTTTCCTTTCGATAATGCTGTTTTTAGTGAGTACAAAGAAGTGAAGATGTTTTGAGGGATACCGTTCACACAGGAAATTCTAATGATATACAGTCATTTCTAGCTAAAAAAGAATCTGATGTCTTAAAAGATGTTTACGATGATAGTGTGAAAATATATTTTTCTTTAACATGCGAAATGAAGAAAGAAGGAGCTGAGGAACTTCGTGTTGATCATTTGAATACAAAAAATGAAACATTACACAAGGGGGATGATAGGAAAGCCTTCTTCGAGACAGTCAAATCAGTTTTGATAAACAGACTAGATCAAAATCAAGGTAGAGGATCTGGTTTTAGACTTAATAGAATCATAGGTTTAAGAATGTTTCAAACTAGAATCAGACCATTATCAGGATCAAAATATATAGAACTACCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTRTTTCCAGTAGAAGAAAACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGATTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTGTCAACATTCTCACTCATAATATTGAGGATAAAGAAAAAATAGATTCATATAAAGTATCCAGAAACATTAAAGTAGAAATAAATCGAGTCGTAAATCTTTTGCTGGTAACGGATAATTCTGGAGAAGGTCACTATTGTTTAATTAAGAATATAGATAGATTAATGAATAACAAAAATGGCACAAGAAATAAATTTTGTATTAGATGTCATAATAACTTTTTAACAAAAGAAAAATTTGAAAACCATTTAAACGACTGTAGGAGTAATTCTCCAATCCAAATGATCAAACCTTCAAAAGATTATATTCAGTTTGATGGGATTCAGAAAACTCAGAAACACAGATATGTTTGCTATGCAGATTTTGAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTGATTGGATTAAAAATAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCCTCAATATTATGAGTGAGAATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTATTTCCAGTAGAAGAAAACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGATTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTGTCAACATTCTCACTCATAATATTGAGGA</canonical_amplicon>
		<polymorphic_amplicon>CCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTRTTTCCAGTAGAAGAAAACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGATTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTGTCAACATTCTCACTCATAATATTGAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36899</snp_id>
        <super_contig>c011701044.Contig3</super_contig>
        <contig_pos>5079</contig_pos>
        <strand></strand>
        <context>AGTAGAAGAA[A/C]ACYCCGAGCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTATTTCCAGTAGAAGAA</left_flank>
        <right_flank>ACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCTGTTTTTAGTGAGTACAAAGAAGTGAAGATGTTTTGAGGGATACCGTTCACACAGGAAATTCTAATGATATACAGTCATTTCTAGCTAAAAAAGAATCTGATGTCTTAAAAGATGTTTACGATGATAGTGTGAAAATATATTTTTCTTTAACATGCGAAATGAAGAAAGAAGGAGCTGAGGAACTTCGTGTTGATCATTTGAATACAAAAAATGAAACATTACACAAGGGGGATGATAGGAAAGCCTTCTTCGAGACAGTCAAATCAGTTTTGATAAACAGACTAGATCAAAATCAAGGTAGAGGATCTGGTTTTAGACTTAATAGAATCATAGGTTTAAGAATGTTTCAAACTAGAATCAGACCATTATCAGGATCAAAATATATAGAACTACCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTATTTCCAGTAGAAGAAAACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGATTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTGTCAACATTCTCACTCATAATATTGAGGATAAAGAAAAAATAGATTCATATAAAGTATCCAGAAACATTAAAGTAGAAATAAATCGAGTCGTAAATCTTTTGCTGGTAACGGATAATTCTGGAGAAGGTCACTATTGTTTAATTAAGAATATAGATAGATTAATGAATAACAAAAATGGCACAAGAAATAAATTTTGTATTAGATGTCATAATAACTTTTTAACAAAAGAAAAATTTGAAAACCATTTAAACGACTGTAGGAGTAATTCTCCAATCCAAATGATCAAACCTTCAAAAGATTATATTCAGTTTGATGGGATTCAGAAAACTCAGAAACACAGATATGTTTGCTATGCAGATTTTGAATCTGTTATCTATAAAATT</canonical>
            <polymorphic>ATGCTGTTTTTAGTGAGTACAAAGAAGTGAAGATGTTTTGAGGGATACCGTTCACACAGGAAATTCTAATGATATACAGTCATTTCTAGCTAAAAAAGAATCTGATGTCTTAAAAGATGTTTACGATGATAGTGTGAAAATATATTTTTCTTTAACATGCGAAATGAAGAAAGAAGGAGCTGAGGAACTTCGTGTTGATCATTTGAATACAAAAAATGAAACATTACACAAGGGGGATGATAGGAAAGCCTTCTTCGAGACAGTCAAATCAGTTTTGATAAACAGACTAGATCAAAATCAAGGTAGAGGATCTGGTTTTAGACTTAATAGAATCATAGGTTTAAGAATGTTTCAAACTAGAATCAGACCATTATCAGGATCAAAATATATAGAACTACCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTATTTCCAGTAGAAGAAMACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGATTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTGTCAACATTCTCACTCATAATATTGAGGATAAAGAAAAAATAGATTCATATAAAGTATCCAGAAACATTAAAGTAGAAATAAATCGAGTCGTAAATCTTTTGCTGGTAACGGATAATTCTGGAGAAGGTCACTATTGTTTAATTAAGAATATAGATAGATTAATGAATAACAAAAATGGCACAAGAAATAAATTTTGTATTAGATGTCATAATAACTTTTTAACAAAAGAAAAATTTGAAAACCATTTAAACGACTGTAGGAGTAATTCTCCAATCCAAATGATCAAACCTTCAAAAGATTATATTCAGTTTGATGGGATTCAGAAAACTCAGAAACACAGATATGTTTGCTATGCAGATTTTGAATCTGTTATCTATAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTGATTGGATTAAAAATAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCCTCAATATTATGAGTGAGAATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTATTTCCAGTAGAAGAAAACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGATTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTGTCAACATTCTCACTCATAATATTGAGGA</canonical_amplicon>
		<polymorphic_amplicon>CCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTATTTCCAGTAGAAGAAMACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGATTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTGTCAACATTCTCACTCATAATATTGAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36900</snp_id>
        <super_contig>c011701044.Contig3</super_contig>
        <contig_pos>5082</contig_pos>
        <strand></strand>
        <context>AGAAGAAMAC[T/C]CCGAGCGAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGTGTTTCATGTGGTGTATCTTAGCTCATTTATTTCCAGTAGAAGAAAAC</left_flank>
        <right_flank>CCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTTTTTAGTGAGTACAAAGAAGTGAAGATGTTTTGAGGGATACCGTTCACACAGGAAATTCTAATGATATACAGTCATTTCTAGCTAAAAAAGAATCTGATGTCTTAAAAGATGTTTACGATGATAGTGTGAAAATATATTTTTCTTTAACATGCGAAATGAAGAAAGAAGGAGCTGAGGAACTTCGTGTTGATCATTTGAATACAAAAAATGAAACATTACACAAGGGGGATGATAGGAAAGCCTTCTTCGAGACAGTCAAATCAGTTTTGATAAACAGACTAGATCAAAATCAAGGTAGAGGATCTGGTTTTAGACTTAATAGAATCATAGGTTTAAGAATGTTTCAAACTAGAATCAGACCATTATCAGGATCAAAATATATAGAACTACCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTATTTCCAGTAGAAGAAAACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGATTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTGTCAACATTCTCACTCATAATATTGAGGATAAAGAAAAAATAGATTCATATAAAGTATCCAGAAACATTAAAGTAGAAATAAATCGAGTCGTAAATCTTTTGCTGGTAACGGATAATTCTGGAGAAGGTCACTATTGTTTAATTAAGAATATAGATAGATTAATGAATAACAAAAATGGCACAAGAAATAAATTTTGTATTAGATGTCATAATAACTTTTTAACAAAAGAAAAATTTGAAAACCATTTAAACGACTGTAGGAGTAATTCTCCAATCCAAATGATCAAACCTTCAAAAGATTATATTCAGTTTGATGGGATTCAGAAAACTCAGAAACACAGATATGTTTGCTATGCAGATTTTGAATCTGTTATCTATAAAATTGAT</canonical>
            <polymorphic>CTGTTTTTAGTGAGTACAAAGAAGTGAAGATGTTTTGAGGGATACCGTTCACACAGGAAATTCTAATGATATACAGTCATTTCTAGCTAAAAAAGAATCTGATGTCTTAAAAGATGTTTACGATGATAGTGTGAAAATATATTTTTCTTTAACATGCGAAATGAAGAAAGAAGGAGCTGAGGAACTTCGTGTTGATCATTTGAATACAAAAAATGAAACATTACACAAGGGGGATGATAGGAAAGCCTTCTTCGAGACAGTCAAATCAGTTTTGATAAACAGACTAGATCAAAATCAAGGTAGAGGATCTGGTTTTAGACTTAATAGAATCATAGGTTTAAGAATGTTTCAAACTAGAATCAGACCATTATCAGGATCAAAATATATAGAACTACCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTATTTCCAGTAGAAGAAAACYCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGATTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTGTCAACATTCTCACTCATAATATTGAGGATAAAGAAAAAATAGATTCATATAAAGTATCCAGAAACATTAAAGTAGAAATAAATCGAGTCGTAAATCTTTTGCTGGTAACGGATAATTCTGGAGAAGGTCACTATTGTTTAATTAAGAATATAGATAGATTAATGAATAACAAAAATGGCACAAGAAATAAATTTTGTATTAGATGTCATAATAACTTTTTAACAAAAGAAAAATTTGAAAACCATTTAAACGACTGTAGGAGTAATTCTCCAATCCAAATGATCAAACCTTCAAAAGATTATATTCAGTTTGATGGGATTCAGAAAACTCAGAAACACAGATATGTTTGCTATGCAGATTTTGAATCTGTTATCTATAAAATTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>434 262 140 100 55 9</canonical_bands>
                <polymorphic_bands>574 262 100 55 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTGATTGGATTAAAAATAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCCTCAATATTATGAGTGAGAATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTATTTCCAGTAGAAGAAAACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGATTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTGTCAACATTCTCACTCATAATATTGAGGA</canonical_amplicon>
		<polymorphic_amplicon>CCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTATTTCCAGTAGAAGAAAACYCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGATTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTGTCAACATTCTCACTCATAATATTGAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36901</snp_id>
        <super_contig>c011701044.Contig3</super_contig>
        <contig_pos>5135</contig_pos>
        <strand></strand>
        <context>CCTTTGATGG[A/G]TTTGAATTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGG</left_flank>
        <right_flank>TTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGGAAATTCTAATGATATACAGTCATTTCTAGCTAAAAAAGAATCTGATGTCTTAAAAGATGTTTACGATGATAGTGTGAAAATATATTTTTCTTTAACATGCGAAATGAAGAAAGAAGGAGCTGAGGAACTTCGTGTTGATCATTTGAATACAAAAAATGAAACATTACACAAGGGGGATGATAGGAAAGCCTTCTTCGAGACAGTCAAATCAGTTTTGATAAACAGACTAGATCAAAATCAAGGTAGAGGATCTGGTTTTAGACTTAATAGAATCATAGGTTTAAGAATGTTTCAAACTAGAATCAGACCATTATCAGGATCAAAATATATAGAACTACCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTATTTCCAGTAGAAGAAAACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGATTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTGTCAACATTCTCACTCATAATATTGAGGATAAAGAAAAAATAGATTCATATAAAGTATCCAGAAACATTAAAGTAGAAATAAATCGAGTCGTAAATCTTTTGCTGGTAACGGATAATTCTGGAGAAGGTCACTATTGTTTAATTAAGAATATAGATAGATTAATGAATAACAAAAATGGCACAAGAAATAAATTTTGTATTAGATGTCATAATAACTTTTTAACAAAAGAAAAATTTGAAAACCATTTAAACGACTGTAGGAGTAATTCTCCAATCCAAATGATCAAACCTTCAAAAGATTATATTCAGTTTGATGGGATTCAGAAAACTCAGAAACACAGATATGTTTGCTATGCAGATTTTGAATCTGTTATCTATAAAATTGATAGTGTGAATTACTCACCTAAGCAGTCATGGAGTGAAAATATTGGAAAACATGT</canonical>
            <polymorphic>CAGGAAATTCTAATGATATACAGTCATTTCTAGCTAAAAAAGAATCTGATGTCTTAAAAGATGTTTACGATGATAGTGTGAAAATATATTTTTCTTTAACATGCGAAATGAAGAAAGAAGGAGCTGAGGAACTTCGTGTTGATCATTTGAATACAAAAAATGAAACATTACACAAGGGGGATGATAGGAAAGCCTTCTTCGAGACAGTCAAATCAGTTTTGATAAACAGACTAGATCAAAATCAAGGTAGAGGATCTGGTTTTAGACTTAATAGAATCATAGGTTTAAGAATGTTTCAAACTAGAATCAGACCATTATCAGGATCAAAATATATAGAACTACCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTATTTCCAGTAGAAGAAAACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGRTTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTGTCAACATTCTCACTCATAATATTGAGGATAAAGAAAAAATAGATTCATATAAAGTATCCAGAAACATTAAAGTAGAAATAAATCGAGTCGTAAATCTTTTGCTGGTAACGGATAATTCTGGAGAAGGTCACTATTGTTTAATTAAGAATATAGATAGATTAATGAATAACAAAAATGGCACAAGAAATAAATTTTGTATTAGATGTCATAATAACTTTTTAACAAAAGAAAAATTTGAAAACCATTTAAACGACTGTAGGAGTAATTCTCCAATCCAAATGATCAAACCTTCAAAAGATTATATTCAGTTTGATGGGATTCAGAAAACTCAGAAACACAGATATGTTTGCTATGCAGATTTTGAATCTGTTATCTATAAAATTGATAGTGTGAATTACTCACCTAAGCAGTCATGGAGTGAAAATATTGGAAAACATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTGATTGGATTAAAAATAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCCTCAATATTATGAGTGAGAATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTATTTCCAGTAGAAGAAAACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGATTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTGTCAACATTCTCACTCATAATATTGAGGA</canonical_amplicon>
		<polymorphic_amplicon>CCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTATTTCCAGTAGAAGAAAACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGRTTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTGTCAACATTCTCACTCATAATATTGAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36902</snp_id>
        <super_contig>c011701044.Contig3</super_contig>
        <contig_pos>5196</contig_pos>
        <strand></strand>
        <context>TAACTTAGCT[G/A]TCAACATTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCT</left_flank>
        <right_flank>TCAACATTCTCACTCATAATATTGAGGATAAAGAAAAAATAGATTCATAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTTACGATGATAGTGTGAAAATATATTTTTCTTTAACATGCGAAATGAAGAAAGAAGGAGCTGAGGAACTTCGTGTTGATCATTTGAATACAAAAAATGAAACATTACACAAGGGGGATGATAGGAAAGCCTTCTTCGAGACAGTCAAATCAGTTTTGATAAACAGACTAGATCAAAATCAAGGTAGAGGATCTGGTTTTAGACTTAATAGAATCATAGGTTTAAGAATGTTTCAAACTAGAATCAGACCATTATCAGGATCAAAATATATAGAACTACCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTATTTCCAGTAGAAGAAAACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGATTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTGTCAACATTCTCACTCATAATATTGAGGATAAAGAAAAAATAGATTCATATAAAGTATCCAGAAACATTAAAGTAGAAATAAATCGAGTCGTAAATCTTTTGCTGGTAACGGATAATTCTGGAGAAGGTCACTATTGTTTAATTAAGAATATAGATAGATTAATGAATAACAAAAATGGCACAAGAAATAAATTTTGTATTAGATGTCATAATAACTTTTTAACAAAAGAAAAATTTGAAAACCATTTAAACGACTGTAGGAGTAATTCTCCAATCCAAATGATCAAACCTTCAAAAGATTATATTCAGTTTGATGGGATTCAGAAAACTCAGAAACACAGATATGTTTGCTATGCAGATTTTGAATCTGTTATCTATAAAATTGATAGTGTGAATTACTCACCTAAGCAGTCATGGAGTGAAAATATTGGAAAACATGTAGCTTCTGCCTTCTGTGTAGTCGTTGTAGATTCTTTCACACAAAAAATCTATGACATGGTA</canonical>
            <polymorphic>TGTTTACGATGATAGTGTGAAAATATATTTTTCTTTAACATGCGAAATGAAGAAAGAAGGAGCTGAGGAACTTCGTGTTGATCATTTGAATACAAAAAATGAAACATTACACAAGGGGGATGATAGGAAAGCCTTCTTCGAGACAGTCAAATCAGTTTTGATAAACAGACTAGATCAAAATCAAGGTAGAGGATCTGGTTTTAGACTTAATAGAATCATAGGTTTAAGAATGTTTCAAACTAGAATCAGACCATTATCAGGATCAAAATATATAGAACTACCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTATTTCCAGTAGAAGAAAACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGATTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTRTCAACATTCTCACTCATAATATTGAGGATAAAGAAAAAATAGATTCATATAAAGTATCCAGAAACATTAAAGTAGAAATAAATCGAGTCGTAAATCTTTTGCTGGTAACGGATAATTCTGGAGAAGGTCACTATTGTTTAATTAAGAATATAGATAGATTAATGAATAACAAAAATGGCACAAGAAATAAATTTTGTATTAGATGTCATAATAACTTTTTAACAAAAGAAAAATTTGAAAACCATTTAAACGACTGTAGGAGTAATTCTCCAATCCAAATGATCAAACCTTCAAAAGATTATATTCAGTTTGATGGGATTCAGAAAACTCAGAAACACAGATATGTTTGCTATGCAGATTTTGAATCTGTTATCTATAAAATTGATAGTGTGAATTACTCACCTAAGCAGTCATGGAGTGAAAATATTGGAAAACATGTAGCTTCTGCCTTCTGTGTAGTCGTTGTAGATTCTTTCACACAAAAAATCTATGACATGGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 498 4</canonical_bands>
                <polymorphic_bands>996 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCCTTTCCAGGTTAAAGAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTATTTCTTGTGCCATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTGTCAACATTCTCACTCATAATATTGAGGATAAAGAAAAAATAGATTCATATAAAGTATCCAGAAACATTAAAGTAGAAATAAATCGAGTCGTAAATCTTTTGCTGGTAACGGATAATTCTGGAGAAGGTCACTATTGTTTAATTAAGAATATAGATAGATTAATGAATAACAAAAATGGCACAAGAAATAAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTRTCAACATTCTCACTCATAATATTGAGGATAAAGAAAAAATAGATTCATATAAAGTATCCAGAAACATTAAAGTAGAAATAAATCGAGTCGTAAATCTTTTGCTGGTAACGGATAATTCTGGAGAAGGTCACTATTGTTTAATTAAGAATATAGATAGATTAATGAATAACAAAAATGGCACAAGAAATAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36903</snp_id>
        <super_contig>c011701044.Contig3</super_contig>
        <contig_pos>5447</contig_pos>
        <strand></strand>
        <context>ACCATTTAAA[C/T]GACTGTAKGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGATGTCATAATAACTTTTTAACAAAAGAAAAATTTGAAAACCATTTAAA</left_flank>
        <right_flank>GACTGTAGGAGTAATTCTCCAATCCAAATGATCAAACCTTCAAAAGATTA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTATCAGGATCAAAATATATAGAACTACCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTATTTCCAGTAGAAGAAAACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGATTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTGTCAACATTCTCACTCATAATATTGAGGATAAAGAAAAAATAGATTCATATAAAGTATCCAGAAACATTAAAGTAGAAATAAATCGAGTCGTAAATCTTTTGCTGGTAACGGATAATTCTGGAGAAGGTCACTATTGTTTAATTAAGAATATAGATAGATTAATGAATAACAAAAATGGCACAAGAAATAAATTTTGTATTAGATGTCATAATAACTTTTTAACAAAAGAAAAATTTGAAAACCATTTAAACGACTGTAGGAGTAATTCTCCAATCCAAATGATCAAACCTTCAAAAGATTATATTCAGTTTGATGGGATTCAGAAAACTCAGAAACACAGATATGTTTGCTATGCAGATTTTGAATCTGTTATCTATAAAATTGATAGTGTGAATTACTCACCTAAGCAGTCATGGAGTGAAAATATTGGAAAACATGTAGCTTCTGCCTTCTGTGTAGTCGTTGTAGATTCTTTCACACAAAAAATCTATGACATGGTAAGCTATGTTGGATACGATACTATTTTGAAATTTAATGAATATATCCTGAACATAAGTGAAAAGCTATTGAACATCGCTGATATGAAAATAGAACAATTGACTGAAGAAGAATTAAAATCATACAATAGTTGTAAATCTTGCCCTGCATGTGGAAATATGTTTCATGGGGATAAAGTTAGAGATCACGACCATTGGACTGGATTATACAGAGGACCTCTATGTAACGCTTGTAACTTATTGAAACGTAGAAA</canonical>
            <polymorphic>CATTATCAGGATCAAAATATATAGAACTACCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTATTTCCAGTAGAAGAAAACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGATTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTGTCAACATTCTCACTCATAATATTGAGGATAAAGAAAAAATAGATTCATATAAAGTATCCAGAAACATTAAAGTAGAAATAAATCGAGTCGTAAATCTTTTGCTGGTAACGGATAATTCTGGAGAAGGTCACTATTGTTTAATTAAGAATATAGATAGATTAATGAATAACAAAAATGGCACAAGAAATAAATTTTGTATTAGATGTCATAATAACTTTTTAACAAAAGAAAAATTTGAAAACCATTTAAAYGACTGTAGGAGTAATTCTCCAATCCAAATGATCAAACCTTCAAAAGATTATATTCAGTTTGATGGGATTCAGAAAACTCAGAAACACAGATATGTTTGCTATGCAGATTTTGAATCTGTTATCTATAAAATTGATAGTGTGAATTACTCACCTAAGCAGTCATGGAGTGAAAATATTGGAAAACATGTAGCTTCTGCCTTCTGTGTAGTCGTTGTAGATTCTTTCACACAAAAAATCTATGACATGGTAAGCTATGTTGGATACGATACTATTTTGAAATTTAATGAATATATCCTGAACATAAGTGAAAAGCTATTGAACATCGCTGATATGAAAATAGAACAATTGACTGAAGAAGAATTAAAATCATACAATAGTTGTAAATCTTGCCCTGCATGTGGAAATATGTTTCATGGGGATAAAGTTAGAGATCACGACCATTGGACTGGATTATACAGAGGACCTCTATGTAACGCTTGTAACTTATTGAAACGTAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGGAGAAGGTCACTATTGTTTA</pcr_primer_p1>
		<pcr_primer_p2>AAAATCTGCATAGCAAACATATC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTGGAGAAGGTCACTATTGTTTAATTAAGAATATAGATAGATTAATGAATAACAAAAATGGCACAAGAAATAAATTTTGTATTAGATGTCATAATAACTTTTTAACAAAAGAAAAATTTGAAAACCATTTAAACGACTGTAGGAGTAATTCTCCAATCCAAATGATCAAACCTTCAAAAGATTATATTCAGTTTGATGGGATTCAGAAAACTCAGAAACACAGATATGTTTGCTATGCAGATTTT</canonical_amplicon>
		<polymorphic_amplicon>CTGGAGAAGGTCACTATTGTTTAATTAAGAATATAGATAGATTAATGAATAACAAAAATGGCACAAGAAATAAATTTTGTATTAGATGTCATAATAACTTTTTAACAAAAGAAAAATTTGAAAACCATTTAAAYGACTGTAGGAGTAATTCTCCAATCCAAATGATCAAACCTTCAAAAGATTATATTCAGTTTGATGGGATTCAGAAAACTCAGAAACACAGATATGTTTGCTATGCAGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36904</snp_id>
        <super_contig>c011701044.Contig3</super_contig>
        <contig_pos>5455</contig_pos>
        <strand></strand>
        <context>AAYGACTGTA[G/T]GAGTAATTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAATAACTTTTTAACAAAAGAAAAATTTGAAAACCATTTAAACGACTGTA</left_flank>
        <right_flank>GAGTAATTCTCCAATCCAAATGATCAAACCTTCAAAAGATTATATTCAGT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATCAAAATATATAGAACTACCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTATTTCCAGTAGAAGAAAACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGATTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTGTCAACATTCTCACTCATAATATTGAGGATAAAGAAAAAATAGATTCATATAAAGTATCCAGAAACATTAAAGTAGAAATAAATCGAGTCGTAAATCTTTTGCTGGTAACGGATAATTCTGGAGAAGGTCACTATTGTTTAATTAAGAATATAGATAGATTAATGAATAACAAAAATGGCACAAGAAATAAATTTTGTATTAGATGTCATAATAACTTTTTAACAAAAGAAAAATTTGAAAACCATTTAAACGACTGTAGGAGTAATTCTCCAATCCAAATGATCAAACCTTCAAAAGATTATATTCAGTTTGATGGGATTCAGAAAACTCAGAAACACAGATATGTTTGCTATGCAGATTTTGAATCTGTTATCTATAAAATTGATAGTGTGAATTACTCACCTAAGCAGTCATGGAGTGAAAATATTGGAAAACATGTAGCTTCTGCCTTCTGTGTAGTCGTTGTAGATTCTTTCACACAAAAAATCTATGACATGGTAAGCTATGTTGGATACGATACTATTTTGAAATTTAATGAATATATCCTGAACATAAGTGAAAAGCTATTGAACATCGCTGATATGAAAATAGAACAATTGACTGAAGAAGAATTAAAATCATACAATAGTTGTAAATCTTGCCCTGCATGTGGAAATATGTTTCATGGGGATAAAGTTAGAGATCACGACCATTGGACTGGATTATACAGAGGACCTCTATGTAACGCTTGTAACTTATTGAAACGTAGAAATAATTTTA</canonical>
            <polymorphic>GGATCAAAATATATAGAACTACCTGATTGGATTAAAAATAAGAAAGCAGTAATCAATATAAAAAATAAAGATGATAAGTGTTTCATGTGGTGTATCTTAGCTCATTTATTTCCAGTAGAAGAAAACTCCGAGCGAGTAGCTAAATATAAATATCATGTTTCTAAAATTACCTTTGATGGATTTGAATTTCCTTTCCAGGTTAAAGATGTGGATAGGTTTGAGAAAAAAAATAACTTAGCTGTCAACATTCTCACTCATAATATTGAGGATAAAGAAAAAATAGATTCATATAAAGTATCCAGAAACATTAAAGTAGAAATAAATCGAGTCGTAAATCTTTTGCTGGTAACGGATAATTCTGGAGAAGGTCACTATTGTTTAATTAAGAATATAGATAGATTAATGAATAACAAAAATGGCACAAGAAATAAATTTTGTATTAGATGTCATAATAACTTTTTAACAAAAGAAAAATTTGAAAACCATTTAAACGACTGTAKGAGTAATTCTCCAATCCAAATGATCAAACCTTCAAAAGATTATATTCAGTTTGATGGGATTCAGAAAACTCAGAAACACAGATATGTTTGCTATGCAGATTTTGAATCTGTTATCTATAAAATTGATAGTGTGAATTACTCACCTAAGCAGTCATGGAGTGAAAATATTGGAAAACATGTAGCTTCTGCCTTCTGTGTAGTCGTTGTAGATTCTTTCACACAAAAAATCTATGACATGGTAAGCTATGTTGGATACGATACTATTTTGAAATTTAATGAATATATCCTGAACATAAGTGAAAAGCTATTGAACATCGCTGATATGAAAATAGAACAATTGACTGAAGAAGAATTAAAATCATACAATAGTTGTAAATCTTGCCCTGCATGTGGAAATATGTTTCATGGGGATAAAGTTAGAGATCACGACCATTGGACTGGATTATACAGAGGACCTCTATGTAACGCTTGTAACTTATTGAAACGTAGAAATAATTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGGAGAAGGTCACTATTGTTTA</pcr_primer_p1>
		<pcr_primer_p2>AAAATCTGCATAGCAAACATATC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTGGAGAAGGTCACTATTGTTTAATTAAGAATATAGATAGATTAATGAATAACAAAAATGGCACAAGAAATAAATTTTGTATTAGATGTCATAATAACTTTTTAACAAAAGAAAAATTTGAAAACCATTTAAACGACTGTAGGAGTAATTCTCCAATCCAAATGATCAAACCTTCAAAAGATTATATTCAGTTTGATGGGATTCAGAAAACTCAGAAACACAGATATGTTTGCTATGCAGATTTT</canonical_amplicon>
		<polymorphic_amplicon>CTGGAGAAGGTCACTATTGTTTAATTAAGAATATAGATAGATTAATGAATAACAAAAATGGCACAAGAAATAAATTTTGTATTAGATGTCATAATAACTTTTTAACAAAAGAAAAATTTGAAAACCATTTAAACGACTGTAKGAGTAATTCTCCAATCCAAATGATCAAACCTTCAAAAGATTATATTCAGTTTGATGGGATTCAGAAAACTCAGAAACACAGATATGTTTGCTATGCAGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36905</snp_id>
        <super_contig>c011701044.Contig3</super_contig>
        <contig_pos>5786</contig_pos>
        <strand></strand>
        <context>ATATGAAAAT[A/G]GAACAATTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATATCCTGAACATAAGTGAAAAGCTATTGAACATCGCTGATATGAAAAT</left_flank>
        <right_flank>GAACAATTGACTGAAGAAGAATTAAAATCATACAATAGTTGTAAATCTTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAATCTTTTGCTGGTAACGGATAATTCTGGAGAAGGTCACTATTGTTTAATTAAGAATATAGATAGATTAATGAATAACAAAAATGGCACAAGAAATAAATTTTGTATTAGATGTCATAATAACTTTTTAACAAAAGAAAAATTTGAAAACCATTTAAACGACTGTAGGAGTAATTCTCCAATCCAAATGATCAAACCTTCAAAAGATTATATTCAGTTTGATGGGATTCAGAAAACTCAGAAACACAGATATGTTTGCTATGCAGATTTTGAATCTGTTATCTATAAAATTGATAGTGTGAATTACTCACCTAAGCAGTCATGGAGTGAAAATATTGGAAAACATGTAGCTTCTGCCTTCTGTGTAGTCGTTGTAGATTCTTTCACACAAAAAATCTATGACATGGTAAGCTATGTTGGATACGATACTATTTTGAAATTTAATGAATATATCCTGAACATAAGTGAAAAGCTATTGAACATCGCTGATATGAAAATAGAACAATTGACTGAAGAAGAATTAAAATCATACAATAGTTGTAAATCTTGCCCTGCATGTGGAAATATGTTTCATGGGGATAAAGTTAGAGATCACGACCATTGGACTGGATTATACAGAGGACCTCTATGTAACGCTTGTAACTTATTGAAACGTAGAAATAATTTTATACCAGTGTTTTTCCATAATCTTAAAGGCTATGATTCACACCTCATTATCAGTGATGAGAAATCTAGTGACTTATTAAAGAAAAGAGGTGTAGAAATTAAAAGCATTTCAGCCAATATAGAGAAGTTCATTAGTTTTAGTTATTTCTTTCATGATGAAGATCGTAAAAGATATGAAATAAGATTCTTAGATAGTTTAGGATTCATGCCTTCAAGTCTAGATTATCTCAGCAGTAACCTACAAAATGATGAATGTGTTATTACTAAAAAGTATTACGATAATGAAAATATATTTAGTCTATTAAGACGAAAAGGTGTATATCCATATGACTT</canonical>
            <polymorphic>TAAATCTTTTGCTGGTAACGGATAATTCTGGAGAAGGTCACTATTGTTTAATTAAGAATATAGATAGATTAATGAATAACAAAAATGGCACAAGAAATAAATTTTGTATTAGATGTCATAATAACTTTTTAACAAAAGAAAAATTTGAAAACCATTTAAACGACTGTAGGAGTAATTCTCCAATCCAAATGATCAAACCTTCAAAAGATTATATTCAGTTTGATGGGATTCAGAAAACTCAGAAACACAGATATGTTTGCTATGCAGATTTTGAATCTGTTATCTATAAAATTGATAGTGTGAATTACTCACCTAAGCAGTCATGGAGTGAAAATATTGGAAAACATGTAGCTTCTGCCTTCTGTGTAGTCGTTGTAGATTCTTTCACACAAAAAATCTATGACATGGTAAGCTATGTTGGATACGATACTATTTTGAAATTTAATGAATATATCCTGAACATAAGTGAAAAGCTATTGAACATCGCTGATATGAAAATRGAACAATTGACTGAAGAAGAATTAAAATCATACAATAGTTGTAAATCTTGCCCTGCATGTGGAAATATGTTTCATGGGGATAAAGTTAGAGATCACGACCATTGGACTGGATTATACAGAGGACCTCTATGTAACGCTTGTAACTTATTGAAACGTAGAAATAATTTTATACCAGTGTTTTTCCATAATCTTAAAGGCTATGATTCACACCTCATTATCAGTGATGAGAAATCTAGTGACTTATTAAAGAAAAGAGGTGTAGAAATTAAAAGCATTTCAGCCAATATAGAGAAGTTCATTAGTTTTAGTTATTTCTTTCATGATGAAGATCGTAAAAGATATGAAATAAGATTCTTAGATAGTTTAGGATTCATGCCTTCAAGTCTAGATTATCTCAGCAGTAACCTACAAAATGATGAATGTGTTATTACTAAAAAGTATTACGATAATGAAAATATATTTAGTCTATTAAGACGAAAAGGTGTATATCCATATGACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATGGTAAGCTATGTTGGATAC</pcr_primer_p1>
		<pcr_primer_p2>TTCAATAAGTTACAAGCGTTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATGGTAAGCTATGTTGGATACGATACTATTTTGAAATTTAATGAATATATCCTGAACATAAGTGAAAAGCTATTGAACATCGCTGATATGAAAATAGAACAATTGACTGAAGAAGAATTAAAATCATACAATAGTTGTAAATCTTGCCCTGCATGTGGAAATATGTTTCATGGGGATAAAGTTAGAGATCACGACCATTGGACTGGATTATACAGAGGACCTCTATGTAACGCTTGTAACTTATTGAA</canonical_amplicon>
		<polymorphic_amplicon>ACATGGTAAGCTATGTTGGATACGATACTATTTTGAAATTTAATGAATATATCCTGAACATAAGTGAAAAGCTATTGAACATCGCTGATATGAAAATRGAACAATTGACTGAAGAAGAATTAAAATCATACAATAGTTGTAAATCTTGCCCTGCATGTGGAAATATGTTTCATGGGGATAAAGTTAGAGATCACGACCATTGGACTGGATTATACAGAGGACCTCTATGTAACGCTTGTAACTTATTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36906</snp_id>
        <super_contig>c011701044.Contig3</super_contig>
        <contig_pos>5837</contig_pos>
        <strand></strand>
        <context>GTAAATCTTG[C/T]CCTGCATGTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAACAATTGACTGAAGAAGAATTAAAATCATACAATAGTTGTAAATCTTG</left_flank>
        <right_flank>CCTGCATGTGGAAATATGTTTCATGGGGATAAAGTTAGAGATCACGACCA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAGAATATAGATAGATTAATGAATAACAAAAATGGCACAAGAAATAAATTTTGTATTAGATGTCATAATAACTTTTTAACAAAAGAAAAATTTGAAAACCATTTAAACGACTGTAGGAGTAATTCTCCAATCCAAATGATCAAACCTTCAAAAGATTATATTCAGTTTGATGGGATTCAGAAAACTCAGAAACACAGATATGTTTGCTATGCAGATTTTGAATCTGTTATCTATAAAATTGATAGTGTGAATTACTCACCTAAGCAGTCATGGAGTGAAAATATTGGAAAACATGTAGCTTCTGCCTTCTGTGTAGTCGTTGTAGATTCTTTCACACAAAAAATCTATGACATGGTAAGCTATGTTGGATACGATACTATTTTGAAATTTAATGAATATATCCTGAACATAAGTGAAAAGCTATTGAACATCGCTGATATGAAAATAGAACAATTGACTGAAGAAGAATTAAAATCATACAATAGTTGTAAATCTTGCCCTGCATGTGGAAATATGTTTCATGGGGATAAAGTTAGAGATCACGACCATTGGACTGGATTATACAGAGGACCTCTATGTAACGCTTGTAACTTATTGAAACGTAGAAATAATTTTATACCAGTGTTTTTCCATAATCTTAAAGGCTATGATTCACACCTCATTATCAGTGATGAGAAATCTAGTGACTTATTAAAGAAAAGAGGTGTAGAAATTAAAAGCATTTCAGCCAATATAGAGAAGTTCATTAGTTTTAGTTATTTCTTTCATGATGAAGATCGTAAAAGATATGAAATAAGATTCTTAGATAGTTTAGGATTCATGCCTTCAAGTCTAGATTATCTCAGCAGTAACCTACAAAATGATGAATGTGTTATTACTAAAAAGTATTACGATAATGAAAATATATTTAGTCTATTAAGACGAAAAGGTGTATATCCATATGACTTCATGGATTCCTTCAAAAAATATTCTAACACGGAGCTCCCTCCAATTGAAAA</canonical>
            <polymorphic>TTAAGAATATAGATAGATTAATGAATAACAAAAATGGCACAAGAAATAAATTTTGTATTAGATGTCATAATAACTTTTTAACAAAAGAAAAATTTGAAAACCATTTAAACGACTGTAGGAGTAATTCTCCAATCCAAATGATCAAACCTTCAAAAGATTATATTCAGTTTGATGGGATTCAGAAAACTCAGAAACACAGATATGTTTGCTATGCAGATTTTGAATCTGTTATCTATAAAATTGATAGTGTGAATTACTCACCTAAGCAGTCATGGAGTGAAAATATTGGAAAACATGTAGCTTCTGCCTTCTGTGTAGTCGTTGTAGATTCTTTCACACAAAAAATCTATGACATGGTAAGCTATGTTGGATACGATACTATTTTGAAATTTAATGAATATATCCTGAACATAAGTGAAAAGCTATTGAACATCGCTGATATGAAAATAGAACAATTGACTGAAGAAGAATTAAAATCATACAATAGTTGTAAATCTTGYCCTGCATGTGGAAATATGTTTCATGGGGATAAAGTTAGAGATCACGACCATTGGACTGGATTATACAGAGGACCTCTATGTAACGCTTGTAACTTATTGAAACGTAGAAATAATTTTATACCAGTGTTTTTCCATAATCTTAAAGGCTATGATTCACACCTCATTATCAGTGATGAGAAATCTAGTGACTTATTAAAGAAAAGAGGTGTAGAAATTAAAAGCATTTCAGCCAATATAGAGAAGTTCATTAGTTTTAGTTATTTCTTTCATGATGAAGATCGTAAAAGATATGAAATAAGATTCTTAGATAGTTTAGGATTCATGCCTTCAAGTCTAGATTATCTCAGCAGTAACCTACAAAATGATGAATGTGTTATTACTAAAAAGTATTACGATAATGAAAATATATTTAGTCTATTAAGACGAAAAGGTGTATATCCATATGACTTCATGGATTCCTTCAAAAAATATTCTAACACGGAGCTCCCTCCAATTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATGGTAAGCTATGTTGGATAC</pcr_primer_p1>
		<pcr_primer_p2>TTCAATAAGTTACAAGCGTTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATGGTAAGCTATGTTGGATACGATACTATTTTGAAATTTAATGAATATATCCTGAACATAAGTGAAAAGCTATTGAACATCGCTGATATGAAAATAGAACAATTGACTGAAGAAGAATTAAAATCATACAATAGTTGTAAATCTTGCCCTGCATGTGGAAATATGTTTCATGGGGATAAAGTTAGAGATCACGACCATTGGACTGGATTATACAGAGGACCTCTATGTAACGCTTGTAACTTATTGAA</canonical_amplicon>
		<polymorphic_amplicon>ACATGGTAAGCTATGTTGGATACGATACTATTTTGAAATTTAATGAATATATCCTGAACATAAGTGAAAAGCTATTGAACATCGCTGATATGAAAATAGAACAATTGACTGAAGAAGAATTAAAATCATACAATAGTTGTAAATCTTGYCCTGCATGTGGAAATATGTTTCATGGGGATAAAGTTAGAGATCACGACCATTGGACTGGATTATACAGAGGACCTCTATGTAACGCTTGTAACTTATTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36907</snp_id>
        <super_contig>c011701044.Contig3</super_contig>
        <contig_pos>5853</contig_pos>
        <strand></strand>
        <context>ATGTGGAAAT[A/G]TGTTTCATGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGAATTAAAATCATACAATAGTTGTAAATCTTGCCCTGCATGTGGAAAT</left_flank>
        <right_flank>TGTTTCATGGGGATAAAGTTAGAGATCACGACCATTGGACTGGATTATAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAATGAATAACAAAAATGGCACAAGAAATAAATTTTGTATTAGATGTCATAATAACTTTTTAACAAAAGAAAAATTTGAAAACCATTTAAACGACTGTAGGAGTAATTCTCCAATCCAAATGATCAAACCTTCAAAAGATTATATTCAGTTTGATGGGATTCAGAAAACTCAGAAACACAGATATGTTTGCTATGCAGATTTTGAATCTGTTATCTATAAAATTGATAGTGTGAATTACTCACCTAAGCAGTCATGGAGTGAAAATATTGGAAAACATGTAGCTTCTGCCTTCTGTGTAGTCGTTGTAGATTCTTTCACACAAAAAATCTATGACATGGTAAGCTATGTTGGATACGATACTATTTTGAAATTTAATGAATATATCCTGAACATAAGTGAAAAGCTATTGAACATCGCTGATATGAAAATAGAACAATTGACTGAAGAAGAATTAAAATCATACAATAGTTGTAAATCTTGCCCTGCATGTGGAAATATGTTTCATGGGGATAAAGTTAGAGATCACGACCATTGGACTGGATTATACAGAGGACCTCTATGTAACGCTTGTAACTTATTGAAACGTAGAAATAATTTTATACCAGTGTTTTTCCATAATCTTAAAGGCTATGATTCACACCTCATTATCAGTGATGAGAAATCTAGTGACTTATTAAAGAAAAGAGGTGTAGAAATTAAAAGCATTTCAGCCAATATAGAGAAGTTCATTAGTTTTAGTTATTTCTTTCATGATGAAGATCGTAAAAGATATGAAATAAGATTCTTAGATAGTTTAGGATTCATGCCTTCAAGTCTAGATTATCTCAGCAGTAACCTACAAAATGATGAATGTGTTATTACTAAAAAGTATTACGATAATGAAAATATATTTAGTCTATTAAGACGAAAAGGTGTATATCCATATGACTTCATGGATTCCTTCAAAAAATATTCTAACACGGAGCTCCCTCCAATTGAAAACTTTTATAATAGTTTA</canonical>
            <polymorphic>ATTAATGAATAACAAAAATGGCACAAGAAATAAATTTTGTATTAGATGTCATAATAACTTTTTAACAAAAGAAAAATTTGAAAACCATTTAAACGACTGTAGGAGTAATTCTCCAATCCAAATGATCAAACCTTCAAAAGATTATATTCAGTTTGATGGGATTCAGAAAACTCAGAAACACAGATATGTTTGCTATGCAGATTTTGAATCTGTTATCTATAAAATTGATAGTGTGAATTACTCACCTAAGCAGTCATGGAGTGAAAATATTGGAAAACATGTAGCTTCTGCCTTCTGTGTAGTCGTTGTAGATTCTTTCACACAAAAAATCTATGACATGGTAAGCTATGTTGGATACGATACTATTTTGAAATTTAATGAATATATCCTGAACATAAGTGAAAAGCTATTGAACATCGCTGATATGAAAATAGAACAATTGACTGAAGAAGAATTAAAATCATACAATAGTTGTAAATCTTGCCCTGCATGTGGAAATRTGTTTCATGGGGATAAAGTTAGAGATCACGACCATTGGACTGGATTATACAGAGGACCTCTATGTAACGCTTGTAACTTATTGAAACGTAGAAATAATTTTATACCAGTGTTTTTCCATAATCTTAAAGGCTATGATTCACACCTCATTATCAGTGATGAGAAATCTAGTGACTTATTAAAGAAAAGAGGTGTAGAAATTAAAAGCATTTCAGCCAATATAGAGAAGTTCATTAGTTTTAGTTATTTCTTTCATGATGAAGATCGTAAAAGATATGAAATAAGATTCTTAGATAGTTTAGGATTCATGCCTTCAAGTCTAGATTATCTCAGCAGTAACCTACAAAATGATGAATGTGTTATTACTAAAAAGTATTACGATAATGAAAATATATTTAGTCTATTAAGACGAAAAGGTGTATATCCATATGACTTCATGGATTCCTTCAAAAAATATTCTAACACGGAGCTCCCTCCAATTGAAAACTTTTATAATAGTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATGGTAAGCTATGTTGGATAC</pcr_primer_p1>
		<pcr_primer_p2>TTCAATAAGTTACAAGCGTTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATGGTAAGCTATGTTGGATACGATACTATTTTGAAATTTAATGAATATATCCTGAACATAAGTGAAAAGCTATTGAACATCGCTGATATGAAAATAGAACAATTGACTGAAGAAGAATTAAAATCATACAATAGTTGTAAATCTTGCCCTGCATGTGGAAATATGTTTCATGGGGATAAAGTTAGAGATCACGACCATTGGACTGGATTATACAGAGGACCTCTATGTAACGCTTGTAACTTATTGAA</canonical_amplicon>
		<polymorphic_amplicon>ACATGGTAAGCTATGTTGGATACGATACTATTTTGAAATTTAATGAATATATCCTGAACATAAGTGAAAAGCTATTGAACATCGCTGATATGAAAATAGAACAATTGACTGAAGAAGAATTAAAATCATACAATAGTTGTAAATCTTGCCCTGCATGTGGAAATRTGTTTCATGGGGATAAAGTTAGAGATCACGACCATTGGACTGGATTATACAGAGGACCTCTATGTAACGCTTGTAACTTATTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36908</snp_id>
        <super_contig>c011701044.Contig3</super_contig>
        <contig_pos>6357</contig_pos>
        <strand></strand>
        <context>TAGTTTATCT[A/G]GTGAGAACAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCTAACACGGAGCTCCCTCCAATTGAAAACTTTTATAATAGTTTATCT</left_flank>
        <right_flank>GTGAGAACATTAGCAGTGAGAGTTATGAATATGCTCTAAAGGTATGGAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATGGGGATAAAGTTAGAGATCACGACCATTGGACTGGATTATACAGAGGACCTCTATGTAACGCTTGTAACTTATTGAAACGTAGAAATAATTTTATACCAGTGTTTTTCCATAATCTTAAAGGCTATGATTCACACCTCATTATCAGTGATGAGAAATCTAGTGACTTATTAAAGAAAAGAGGTGTAGAAATTAAAAGCATTTCAGCCAATATAGAGAAGTTCATTAGTTTTAGTTATTTCTTTCATGATGAAGATCGTAAAAGATATGAAATAAGATTCTTAGATAGTTTAGGATTCATGCCTTCAAGTCTAGATTATCTCAGCAGTAACCTACAAAATGATGAATGTGTTATTACTAAAAAGTATTACGATAATGAAAATATATTTAGTCTATTAAGACGAAAAGGTGTATATCCATATGACTTCATGGATTCCTTCAAAAAATATTCTAACACGGAGCTCCCTCCAATTGAAAACTTTTATAATAGTTTATCTAGTGAGAACATTAGCAGTGAGAGTTATGAATATGCTCTAAAGGTATGGAATGAAACAAATTGTAAAACTTTAGAAGACTACACTAGAATTTACATGGTTAATGATGTGTTACTATTAGCTGATGTGTTTGAAACTTTCAGAAATGTGTCTCTTAAAGAATACAAGTTAGATCCATGTTGGTACTATACATCTCCCGGATTAGCTTGGGAGGCAATGTTATTCAAAACTGGAGTTAAGCTACAAACAATTAAAGATATTGAAATGTATAACTTTATTGAGAAAGGTATCAGGGGAGGTATGTGTAATGCTATGTTGAGATATTCTAAGGCTAACAATAAGTACATGTCAAATTATAATCCTGAAGAGGAATCAAAATACTTACTTTATCTAGATGCTAATAATCTTTATGGATGGGCAATGAGTCAAAAATTACCATACGATGATTTCAAATTTATGAATGCTGCAGAGTTTAGTGTGGAAATGTTAGAAAATCTCAATTCT</canonical>
            <polymorphic>TCATGGGGATAAAGTTAGAGATCACGACCATTGGACTGGATTATACAGAGGACCTCTATGTAACGCTTGTAACTTATTGAAACGTAGAAATAATTTTATACCAGTGTTTTTCCATAATCTTAAAGGCTATGATTCACACCTCATTATCAGTGATGAGAAATCTAGTGACTTATTAAAGAAAAGAGGTGTAGAAATTAAAAGCATTTCAGCCAATATAGAGAAGTTCATTAGTTTTAGTTATTTCTTTCATGATGAAGATCGTAAAAGATATGAAATAAGATTCTTAGATAGTTTAGGATTCATGCCTTCAAGTCTAGATTATCTCAGCAGTAACCTACAAAATGATGAATGTGTTATTACTAAAAAGTATTACGATAATGAAAATATATTTAGTCTATTAAGACGAAAAGGTGTATATCCATATGACTTCATGGATTCCTTCAAAAAATATTCTAACACGGAGCTCCCTCCAATTGAAAACTTTTATAATAGTTTATCTRGTGAGAACATTAGCAGTGAGAGTTATGAATATGCTCTAAAGGTATGGAATGAAACAAATTGTAAAACTTTAGAAGACTACACTAGAATTTACATGGTTAATGATGTGTTACTATTAGCTGATGTGTTTGAAACTTTCAGAAATGTGTCTCTTAAAGAATACAAGTTAGATCCATGTTGGTACTATACATCTCCCGGATTAGCTTGGGAGGCAATGTTATTCAAAACTGGAGTTAAGCTACAAACAATTAAAGATATTGAAATGTATAACTTTATTGAGAAAGGTATCAGGGGAGGTATGTGTAATGCTATGTTGAGATATTCTAAGGCTAACAATAAGTACATGTCAAATTATAATCCTGAAGAGGAATCAAAATACTTACTTTATCTAGATGCTAATAATCTTTATGGATGGGCAATGAGTCAAAAATTACCATACGATGATTTCAAATTTATGAATGCTGCAGAGTTTAGTGTGGAAATGTTAGAAAATCTCAATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>305 184 162 152 113 84</canonical_bands>
                <polymorphic_bands>305 268 162 152 113</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATCTCAGCAGTAACCTACAAAA</pcr_primer_p1>
		<pcr_primer_p2>TACAATTTGTTTCATTCCATACC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTATCTCAGCAGTAACCTACAAAATGATGAATGTGTTATTACTAAAAAGTATTACGATAATGAAAATATATTTAGTCTATTAAGACGAAAAGGTGTATATCCATATGACTTCATGGATTCCTTCAAAAAATATTCTAACACGGAGCTCCCTCCAATTGAAAACTTTTATAATAGTTTATCTAGTGAGAACATTAGCAGTGAGAGTTATGAATATGCTCTAAAGGTATGGAATGAAACAAATTGTA</canonical_amplicon>
		<polymorphic_amplicon>TTATCTCAGCAGTAACCTACAAAATGATGAATGTGTTATTACTAAAAAGTATTACGATAATGAAAATATATTTAGTCTATTAAGACGAAAAGGTGTATATCCATATGACTTCATGGATTCCTTCAAAAAATATTCTAACACGGAGCTCCCTCCAATTGAAAACTTTTATAATAGTTTATCTRGTGAGAACATTAGCAGTGAGAGTTATGAATATGCTCTAAAGGTATGGAATGAAACAAATTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36909</snp_id>
        <super_contig>c011701044.Contig3</super_contig>
        <contig_pos>6566</contig_pos>
        <strand></strand>
        <context>TAGCTTGGGA[G/T]GCMATGTTAW</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TACAAGTTAGATCCATGTTGGTACTATACATCTCCCGGATTAGCTTGGGA</left_flank>
        <right_flank>GCAATGTTATTCAAAACTGGAGTTAAGCTACAAACAATTAAAGATATTGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAATATAGAGAAGTTCATTAGTTTTAGTTATTTCTTTCATGATGAAGATCGTAAAAGATATGAAATAAGATTCTTAGATAGTTTAGGATTCATGCCTTCAAGTCTAGATTATCTCAGCAGTAACCTACAAAATGATGAATGTGTTATTACTAAAAAGTATTACGATAATGAAAATATATTTAGTCTATTAAGACGAAAAGGTGTATATCCATATGACTTCATGGATTCCTTCAAAAAATATTCTAACACGGAGCTCCCTCCAATTGAAAACTTTTATAATAGTTTATCTAGTGAGAACATTAGCAGTGAGAGTTATGAATATGCTCTAAAGGTATGGAATGAAACAAATTGTAAAACTTTAGAAGACTACACTAGAATTTACATGGTTAATGATGTGTTACTATTAGCTGATGTGTTTGAAACTTTCAGAAATGTGTCTCTTAAAGAATACAAGTTAGATCCATGTTGGTACTATACATCTCCCGGATTAGCTTGGGAGGCAATGTTATTCAAAACTGGAGTTAAGCTACAAACAATTAAAGATATTGAAATGTATAACTTTATTGAGAAAGGTATCAGGGGAGGTATGTGTAATGCTATGTTGAGATATTCTAAGGCTAACAATAAGTACATGTCAAATTATAATCCTGAAGAGGAATCAAAATACTTACTTTATCTAGATGCTAATAATCTTTATGGATGGGCAATGAGTCAAAAATTACCATACGATGATTTCAAATTTATGAATGCTGCAGAGTTTAGTGTGGAAATGTTAGAAAATCTCAATTCTCAAGGCAGAGGATGCATACTTGAAGTTGACTTAGATTATCCAGATAGTCTTCATGATAAGCATAATGATCTTCCATTTTGTCCAGAAAATAAACGAGTTGGTTCTACCAATAAATTAATTAATGATTTTAGTCCAAAAAGAAATTATGTGATTCATTATAAGAATTTACTACAAGTATTAGAGCATGGTTTAATGTTAAAAAAGGTTCA</canonical>
            <polymorphic>CCAATATAGAGAAGTTCATTAGTTTTAGTTATTTCTTTCATGATGAAGATCGTAAAAGATATGAAATAAGATTCTTAGATAGTTTAGGATTCATGCCTTCAAGTCTAGATTATCTCAGCAGTAACCTACAAAATGATGAATGTGTTATTACTAAAAAGTATTACGATAATGAAAATATATTTAGTCTATTAAGACGAAAAGGTGTATATCCATATGACTTCATGGATTCCTTCAAAAAATATTCTAACACGGAGCTCCCTCCAATTGAAAACTTTTATAATAGTTTATCTAGTGAGAACATTAGCAGTGAGAGTTATGAATATGCTCTAAAGGTATGGAATGAAACAAATTGTAAAACTTTAGAAGACTACACTAGAATTTACATGGTTAATGATGTGTTACTATTAGCTGATGTGTTTGAAACTTTCAGAAATGTGTCTCTTAAAGAATACAAGTTAGATCCATGTTGGTACTATACATCTCCCGGATTAGCTTGGGAKGCAATGTTATTCAAAACTGGAGTTAAGCTACAAACAATTAAAGATATTGAAATGTATAACTTTATTGAGAAAGGTATCAGGGGAGGTATGTGTAATGCTATGTTGAGATATTCTAAGGCTAACAATAAGTACATGTCAAATTATAATCCTGAAGAGGAATCAAAATACTTACTTTATCTAGATGCTAATAATCTTTATGGATGGGCAATGAGTCAAAAATTACCATACGATGATTTCAAATTTATGAATGCTGCAGAGTTTAGTGTGGAAATGTTAGAAAATCTCAATTCTCAAGGCAGAGGATGCATACTTGAAGTTGACTTAGATTATCCAGATAGTCTTCATGATAAGCATAATGATCTTCCATTTTGTCCAGAAAATAAACGAGTTGGTTCTACCAATAAATTAATTAATGATTTTAGTCCAAAAAGAAATTATGTGATTCATTATAAGAATTTACTACAAGTATTAGAGCATGGTTTAATGTTAAAAAAGGTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTTTCAGAAATGTGTCTCTTA</pcr_primer_p1>
		<pcr_primer_p2>GTATTTTGATTCCTCTTCAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAACTTTCAGAAATGTGTCTCTTAAAGAATACAAGTTAGATCCATGTTGGTACTATACATCTCCCGGATTAGCTTGGGAGGCAATGTTATTCAAAACTGGAGTTAAGCTACAAACAATTAAAGATATTGAAATGTATAACTTTATTGAGAAAGGTATCAGGGGAGGTATGTGTAATGCTATGTTGAGATATTCTAAGGCTAACAATAAGTACATGTCAAATTATAATCCTGAAGAGGAATCAAAATAC</canonical_amplicon>
		<polymorphic_amplicon>AAACTTTCAGAAATGTGTCTCTTAAAGAATACAAGTTAGATCCATGTTGGTACTATACATCTCCCGGATTAGCTTGGGAKGCAATGTTATTCAAAACTGGAGTTAAGCTACAAACAATTAAAGATATTGAAATGTATAACTTTATTGAGAAAGGTATCAGGGGAGGTATGTGTAATGCTATGTTGAGATATTCTAAGGCTAACAATAAGTACATGTCAAATTATAATCCTGAAGAGGAATCAAAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36910</snp_id>
        <super_contig>c011701044.Contig3</super_contig>
        <contig_pos>6569</contig_pos>
        <strand></strand>
        <context>CTTGGGAKGC[A/C]ATGTTAWWSA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGTTAGATCCATGTTGGTACTATACATCTCCCGGATTAGCTTGGGAGGC</left_flank>
        <right_flank>ATGTTATTCAAAACTGGAGTTAAGCTACAAACAATTAAAGATATTGAAAT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATAGAGAAGTTCATTAGTTTTAGTTATTTCTTTCATGATGAAGATCGTAAAAGATATGAAATAAGATTCTTAGATAGTTTAGGATTCATGCCTTCAAGTCTAGATTATCTCAGCAGTAACCTACAAAATGATGAATGTGTTATTACTAAAAAGTATTACGATAATGAAAATATATTTAGTCTATTAAGACGAAAAGGTGTATATCCATATGACTTCATGGATTCCTTCAAAAAATATTCTAACACGGAGCTCCCTCCAATTGAAAACTTTTATAATAGTTTATCTAGTGAGAACATTAGCAGTGAGAGTTATGAATATGCTCTAAAGGTATGGAATGAAACAAATTGTAAAACTTTAGAAGACTACACTAGAATTTACATGGTTAATGATGTGTTACTATTAGCTGATGTGTTTGAAACTTTCAGAAATGTGTCTCTTAAAGAATACAAGTTAGATCCATGTTGGTACTATACATCTCCCGGATTAGCTTGGGAGGCAATGTTATTCAAAACTGGAGTTAAGCTACAAACAATTAAAGATATTGAAATGTATAACTTTATTGAGAAAGGTATCAGGGGAGGTATGTGTAATGCTATGTTGAGATATTCTAAGGCTAACAATAAGTACATGTCAAATTATAATCCTGAAGAGGAATCAAAATACTTACTTTATCTAGATGCTAATAATCTTTATGGATGGGCAATGAGTCAAAAATTACCATACGATGATTTCAAATTTATGAATGCTGCAGAGTTTAGTGTGGAAATGTTAGAAAATCTCAATTCTCAAGGCAGAGGATGCATACTTGAAGTTGACTTAGATTATCCAGATAGTCTTCATGATAAGCATAATGATCTTCCATTTTGTCCAGAAAATAAACGAGTTGGTTCTACCAATAAATTAATTAATGATTTTAGTCCAAAAAGAAATTATGTGATTCATTATAAGAATTTACTACAAGTATTAGAGCATGGTTTAATGTTAAAAAAGGTTCATCG</canonical>
            <polymorphic>ATATAGAGAAGTTCATTAGTTTTAGTTATTTCTTTCATGATGAAGATCGTAAAAGATATGAAATAAGATTCTTAGATAGTTTAGGATTCATGCCTTCAAGTCTAGATTATCTCAGCAGTAACCTACAAAATGATGAATGTGTTATTACTAAAAAGTATTACGATAATGAAAATATATTTAGTCTATTAAGACGAAAAGGTGTATATCCATATGACTTCATGGATTCCTTCAAAAAATATTCTAACACGGAGCTCCCTCCAATTGAAAACTTTTATAATAGTTTATCTAGTGAGAACATTAGCAGTGAGAGTTATGAATATGCTCTAAAGGTATGGAATGAAACAAATTGTAAAACTTTAGAAGACTACACTAGAATTTACATGGTTAATGATGTGTTACTATTAGCTGATGTGTTTGAAACTTTCAGAAATGTGTCTCTTAAAGAATACAAGTTAGATCCATGTTGGTACTATACATCTCCCGGATTAGCTTGGGAGGCMATGTTATTCAAAACTGGAGTTAAGCTACAAACAATTAAAGATATTGAAATGTATAACTTTATTGAGAAAGGTATCAGGGGAGGTATGTGTAATGCTATGTTGAGATATTCTAAGGCTAACAATAAGTACATGTCAAATTATAATCCTGAAGAGGAATCAAAATACTTACTTTATCTAGATGCTAATAATCTTTATGGATGGGCAATGAGTCAAAAATTACCATACGATGATTTCAAATTTATGAATGCTGCAGAGTTTAGTGTGGAAATGTTAGAAAATCTCAATTCTCAAGGCAGAGGATGCATACTTGAAGTTGACTTAGATTATCCAGATAGTCTTCATGATAAGCATAATGATCTTCCATTTTGTCCAGAAAATAAACGAGTTGGTTCTACCAATAAATTAATTAATGATTTTAGTCCAAAAAGAAATTATGTGATTCATTATAAGAATTTACTACAAGTATTAGAGCATGGTTTAATGTTAAAAAAGGTTCATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTTTCAGAAATGTGTCTCTTA</pcr_primer_p1>
		<pcr_primer_p2>GTATTTTGATTCCTCTTCAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAACTTTCAGAAATGTGTCTCTTAAAGAATACAAGTTAGATCCATGTTGGTACTATACATCTCCCGGATTAGCTTGGGAGGCAATGTTATTCAAAACTGGAGTTAAGCTACAAACAATTAAAGATATTGAAATGTATAACTTTATTGAGAAAGGTATCAGGGGAGGTATGTGTAATGCTATGTTGAGATATTCTAAGGCTAACAATAAGTACATGTCAAATTATAATCCTGAAGAGGAATCAAAATAC</canonical_amplicon>
		<polymorphic_amplicon>AAACTTTCAGAAATGTGTCTCTTAAAGAATACAAGTTAGATCCATGTTGGTACTATACATCTCCCGGATTAGCTTGGGAGGCMATGTTATTCAAAACTGGAGTTAAGCTACAAACAATTAAAGATATTGAAATGTATAACTTTATTGAGAAAGGTATCAGGGGAGGTATGTGTAATGCTATGTTGAGATATTCTAAGGCTAACAATAAGTACATGTCAAATTATAATCCTGAAGAGGAATCAAAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36911</snp_id>
        <super_contig>c011701044.Contig3</super_contig>
        <contig_pos>6576</contig_pos>
        <strand></strand>
        <context>KGCMATGTTA[T/A]WSAAAACTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATCCATGTTGGTACTATACATCTCCCGGATTAGCTTGGGAGGCAATGTTA</left_flank>
        <right_flank>TCAAAACTGGAGTTAAGCTACAAACAATTAAAGATATTGAAATGTATAAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGTTCATTAGTTTTAGTTATTTCTTTCATGATGAAGATCGTAAAAGATATGAAATAAGATTCTTAGATAGTTTAGGATTCATGCCTTCAAGTCTAGATTATCTCAGCAGTAACCTACAAAATGATGAATGTGTTATTACTAAAAAGTATTACGATAATGAAAATATATTTAGTCTATTAAGACGAAAAGGTGTATATCCATATGACTTCATGGATTCCTTCAAAAAATATTCTAACACGGAGCTCCCTCCAATTGAAAACTTTTATAATAGTTTATCTAGTGAGAACATTAGCAGTGAGAGTTATGAATATGCTCTAAAGGTATGGAATGAAACAAATTGTAAAACTTTAGAAGACTACACTAGAATTTACATGGTTAATGATGTGTTACTATTAGCTGATGTGTTTGAAACTTTCAGAAATGTGTCTCTTAAAGAATACAAGTTAGATCCATGTTGGTACTATACATCTCCCGGATTAGCTTGGGAGGCAATGTTATTCAAAACTGGAGTTAAGCTACAAACAATTAAAGATATTGAAATGTATAACTTTATTGAGAAAGGTATCAGGGGAGGTATGTGTAATGCTATGTTGAGATATTCTAAGGCTAACAATAAGTACATGTCAAATTATAATCCTGAAGAGGAATCAAAATACTTACTTTATCTAGATGCTAATAATCTTTATGGATGGGCAATGAGTCAAAAATTACCATACGATGATTTCAAATTTATGAATGCTGCAGAGTTTAGTGTGGAAATGTTAGAAAATCTCAATTCTCAAGGCAGAGGATGCATACTTGAAGTTGACTTAGATTATCCAGATAGTCTTCATGATAAGCATAATGATCTTCCATTTTGTCCAGAAAATAAACGAGTTGGTTCTACCAATAAATTAATTAATGATTTTAGTCCAAAAAGAAATTATGTGATTCATTATAAGAATTTACTACAAGTATTAGAGCATGGTTTAATGTTAAAAAAGGTTCATCGTATAGTT</canonical>
            <polymorphic>GAAGTTCATTAGTTTTAGTTATTTCTTTCATGATGAAGATCGTAAAAGATATGAAATAAGATTCTTAGATAGTTTAGGATTCATGCCTTCAAGTCTAGATTATCTCAGCAGTAACCTACAAAATGATGAATGTGTTATTACTAAAAAGTATTACGATAATGAAAATATATTTAGTCTATTAAGACGAAAAGGTGTATATCCATATGACTTCATGGATTCCTTCAAAAAATATTCTAACACGGAGCTCCCTCCAATTGAAAACTTTTATAATAGTTTATCTAGTGAGAACATTAGCAGTGAGAGTTATGAATATGCTCTAAAGGTATGGAATGAAACAAATTGTAAAACTTTAGAAGACTACACTAGAATTTACATGGTTAATGATGTGTTACTATTAGCTGATGTGTTTGAAACTTTCAGAAATGTGTCTCTTAAAGAATACAAGTTAGATCCATGTTGGTACTATACATCTCCCGGATTAGCTTGGGAGGCAATGTTAWTCAAAACTGGAGTTAAGCTACAAACAATTAAAGATATTGAAATGTATAACTTTATTGAGAAAGGTATCAGGGGAGGTATGTGTAATGCTATGTTGAGATATTCTAAGGCTAACAATAAGTACATGTCAAATTATAATCCTGAAGAGGAATCAAAATACTTACTTTATCTAGATGCTAATAATCTTTATGGATGGGCAATGAGTCAAAAATTACCATACGATGATTTCAAATTTATGAATGCTGCAGAGTTTAGTGTGGAAATGTTAGAAAATCTCAATTCTCAAGGCAGAGGATGCATACTTGAAGTTGACTTAGATTATCCAGATAGTCTTCATGATAAGCATAATGATCTTCCATTTTGTCCAGAAAATAAACGAGTTGGTTCTACCAATAAATTAATTAATGATTTTAGTCCAAAAAGAAATTATGTGATTCATTATAAGAATTTACTACAAGTATTAGAGCATGGTTTAATGTTAAAAAAGGTTCATCGTATAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTTTCAGAAATGTGTCTCTTA</pcr_primer_p1>
		<pcr_primer_p2>GTATTTTGATTCCTCTTCAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAACTTTCAGAAATGTGTCTCTTAAAGAATACAAGTTAGATCCATGTTGGTACTATACATCTCCCGGATTAGCTTGGGAGGCAATGTTATTCAAAACTGGAGTTAAGCTACAAACAATTAAAGATATTGAAATGTATAACTTTATTGAGAAAGGTATCAGGGGAGGTATGTGTAATGCTATGTTGAGATATTCTAAGGCTAACAATAAGTACATGTCAAATTATAATCCTGAAGAGGAATCAAAATAC</canonical_amplicon>
		<polymorphic_amplicon>AAACTTTCAGAAATGTGTCTCTTAAAGAATACAAGTTAGATCCATGTTGGTACTATACATCTCCCGGATTAGCTTGGGAGGCAATGTTAWTCAAAACTGGAGTTAAGCTACAAACAATTAAAGATATTGAAATGTATAACTTTATTGAGAAAGGTATCAGGGGAGGTATGTGTAATGCTATGTTGAGATATTCTAAGGCTAACAATAAGTACATGTCAAATTATAATCCTGAAGAGGAATCAAAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36912</snp_id>
        <super_contig>c011701044.Contig3</super_contig>
        <contig_pos>6577</contig_pos>
        <strand></strand>
        <context>GCMATGTTAW[T/A]SAAAACTGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCCATGTTGGTACTATACATCTCCCGGATTAGCTTGGGAGGCAATGTTAT</left_flank>
        <right_flank>CAAAACTGGAGTTAAGCTACAAACAATTAAAGATATTGAAATGTATAACT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTCATTAGTTTTAGTTATTTCTTTCATGATGAAGATCGTAAAAGATATGAAATAAGATTCTTAGATAGTTTAGGATTCATGCCTTCAAGTCTAGATTATCTCAGCAGTAACCTACAAAATGATGAATGTGTTATTACTAAAAAGTATTACGATAATGAAAATATATTTAGTCTATTAAGACGAAAAGGTGTATATCCATATGACTTCATGGATTCCTTCAAAAAATATTCTAACACGGAGCTCCCTCCAATTGAAAACTTTTATAATAGTTTATCTAGTGAGAACATTAGCAGTGAGAGTTATGAATATGCTCTAAAGGTATGGAATGAAACAAATTGTAAAACTTTAGAAGACTACACTAGAATTTACATGGTTAATGATGTGTTACTATTAGCTGATGTGTTTGAAACTTTCAGAAATGTGTCTCTTAAAGAATACAAGTTAGATCCATGTTGGTACTATACATCTCCCGGATTAGCTTGGGAGGCAATGTTATTCAAAACTGGAGTTAAGCTACAAACAATTAAAGATATTGAAATGTATAACTTTATTGAGAAAGGTATCAGGGGAGGTATGTGTAATGCTATGTTGAGATATTCTAAGGCTAACAATAAGTACATGTCAAATTATAATCCTGAAGAGGAATCAAAATACTTACTTTATCTAGATGCTAATAATCTTTATGGATGGGCAATGAGTCAAAAATTACCATACGATGATTTCAAATTTATGAATGCTGCAGAGTTTAGTGTGGAAATGTTAGAAAATCTCAATTCTCAAGGCAGAGGATGCATACTTGAAGTTGACTTAGATTATCCAGATAGTCTTCATGATAAGCATAATGATCTTCCATTTTGTCCAGAAAATAAACGAGTTGGTTCTACCAATAAATTAATTAATGATTTTAGTCCAAAAAGAAATTATGTGATTCATTATAAGAATTTACTACAAGTATTAGAGCATGGTTTAATGTTAAAAAAGGTTCATCGTATAGTTA</canonical>
            <polymorphic>AAGTTCATTAGTTTTAGTTATTTCTTTCATGATGAAGATCGTAAAAGATATGAAATAAGATTCTTAGATAGTTTAGGATTCATGCCTTCAAGTCTAGATTATCTCAGCAGTAACCTACAAAATGATGAATGTGTTATTACTAAAAAGTATTACGATAATGAAAATATATTTAGTCTATTAAGACGAAAAGGTGTATATCCATATGACTTCATGGATTCCTTCAAAAAATATTCTAACACGGAGCTCCCTCCAATTGAAAACTTTTATAATAGTTTATCTAGTGAGAACATTAGCAGTGAGAGTTATGAATATGCTCTAAAGGTATGGAATGAAACAAATTGTAAAACTTTAGAAGACTACACTAGAATTTACATGGTTAATGATGTGTTACTATTAGCTGATGTGTTTGAAACTTTCAGAAATGTGTCTCTTAAAGAATACAAGTTAGATCCATGTTGGTACTATACATCTCCCGGATTAGCTTGGGAGGCAATGTTATWCAAAACTGGAGTTAAGCTACAAACAATTAAAGATATTGAAATGTATAACTTTATTGAGAAAGGTATCAGGGGAGGTATGTGTAATGCTATGTTGAGATATTCTAAGGCTAACAATAAGTACATGTCAAATTATAATCCTGAAGAGGAATCAAAATACTTACTTTATCTAGATGCTAATAATCTTTATGGATGGGCAATGAGTCAAAAATTACCATACGATGATTTCAAATTTATGAATGCTGCAGAGTTTAGTGTGGAAATGTTAGAAAATCTCAATTCTCAAGGCAGAGGATGCATACTTGAAGTTGACTTAGATTATCCAGATAGTCTTCATGATAAGCATAATGATCTTCCATTTTGTCCAGAAAATAAACGAGTTGGTTCTACCAATAAATTAATTAATGATTTTAGTCCAAAAAGAAATTATGTGATTCATTATAAGAATTTACTACAAGTATTAGAGCATGGTTTAATGTTAAAAAAGGTTCATCGTATAGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTTTCAGAAATGTGTCTCTTA</pcr_primer_p1>
		<pcr_primer_p2>GTATTTTGATTCCTCTTCAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAACTTTCAGAAATGTGTCTCTTAAAGAATACAAGTTAGATCCATGTTGGTACTATACATCTCCCGGATTAGCTTGGGAGGCAATGTTATTCAAAACTGGAGTTAAGCTACAAACAATTAAAGATATTGAAATGTATAACTTTATTGAGAAAGGTATCAGGGGAGGTATGTGTAATGCTATGTTGAGATATTCTAAGGCTAACAATAAGTACATGTCAAATTATAATCCTGAAGAGGAATCAAAATAC</canonical_amplicon>
		<polymorphic_amplicon>AAACTTTCAGAAATGTGTCTCTTAAAGAATACAAGTTAGATCCATGTTGGTACTATACATCTCCCGGATTAGCTTGGGAGGCAATGTTATWCAAAACTGGAGTTAAGCTACAAACAATTAAAGATATTGAAATGTATAACTTTATTGAGAAAGGTATCAGGGGAGGTATGTGTAATGCTATGTTGAGATATTCTAAGGCTAACAATAAGTACATGTCAAATTATAATCCTGAAGAGGAATCAAAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36913</snp_id>
        <super_contig>c011701044.Contig3</super_contig>
        <contig_pos>6578</contig_pos>
        <strand></strand>
        <context>CMATGTTAWW[C/G]AAAACTGGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCATGTTGGTACTATACATCTCCCGGATTAGCTTGGGAGGCAATGTTATT</left_flank>
        <right_flank>AAAACTGGAGTTAAGCTACAAACAATTAAAGATATTGAAATGTATAACTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTCATTAGTTTTAGTTATTTCTTTCATGATGAAGATCGTAAAAGATATGAAATAAGATTCTTAGATAGTTTAGGATTCATGCCTTCAAGTCTAGATTATCTCAGCAGTAACCTACAAAATGATGAATGTGTTATTACTAAAAAGTATTACGATAATGAAAATATATTTAGTCTATTAAGACGAAAAGGTGTATATCCATATGACTTCATGGATTCCTTCAAAAAATATTCTAACACGGAGCTCCCTCCAATTGAAAACTTTTATAATAGTTTATCTAGTGAGAACATTAGCAGTGAGAGTTATGAATATGCTCTAAAGGTATGGAATGAAACAAATTGTAAAACTTTAGAAGACTACACTAGAATTTACATGGTTAATGATGTGTTACTATTAGCTGATGTGTTTGAAACTTTCAGAAATGTGTCTCTTAAAGAATACAAGTTAGATCCATGTTGGTACTATACATCTCCCGGATTAGCTTGGGAGGCAATGTTATTCAAAACTGGAGTTAAGCTACAAACAATTAAAGATATTGAAATGTATAACTTTATTGAGAAAGGTATCAGGGGAGGTATGTGTAATGCTATGTTGAGATATTCTAAGGCTAACAATAAGTACATGTCAAATTATAATCCTGAAGAGGAATCAAAATACTTACTTTATCTAGATGCTAATAATCTTTATGGATGGGCAATGAGTCAAAAATTACCATACGATGATTTCAAATTTATGAATGCTGCAGAGTTTAGTGTGGAAATGTTAGAAAATCTCAATTCTCAAGGCAGAGGATGCATACTTGAAGTTGACTTAGATTATCCAGATAGTCTTCATGATAAGCATAATGATCTTCCATTTTGTCCAGAAAATAAACGAGTTGGTTCTACCAATAAATTAATTAATGATTTTAGTCCAAAAAGAAATTATGTGATTCATTATAAGAATTTACTACAAGTATTAGAGCATGGTTTAATGTTAAAAAAGGTTCATCGTATAGTTAC</canonical>
            <polymorphic>AGTTCATTAGTTTTAGTTATTTCTTTCATGATGAAGATCGTAAAAGATATGAAATAAGATTCTTAGATAGTTTAGGATTCATGCCTTCAAGTCTAGATTATCTCAGCAGTAACCTACAAAATGATGAATGTGTTATTACTAAAAAGTATTACGATAATGAAAATATATTTAGTCTATTAAGACGAAAAGGTGTATATCCATATGACTTCATGGATTCCTTCAAAAAATATTCTAACACGGAGCTCCCTCCAATTGAAAACTTTTATAATAGTTTATCTAGTGAGAACATTAGCAGTGAGAGTTATGAATATGCTCTAAAGGTATGGAATGAAACAAATTGTAAAACTTTAGAAGACTACACTAGAATTTACATGGTTAATGATGTGTTACTATTAGCTGATGTGTTTGAAACTTTCAGAAATGTGTCTCTTAAAGAATACAAGTTAGATCCATGTTGGTACTATACATCTCCCGGATTAGCTTGGGAGGCAATGTTATTSAAAACTGGAGTTAAGCTACAAACAATTAAAGATATTGAAATGTATAACTTTATTGAGAAAGGTATCAGGGGAGGTATGTGTAATGCTATGTTGAGATATTCTAAGGCTAACAATAAGTACATGTCAAATTATAATCCTGAAGAGGAATCAAAATACTTACTTTATCTAGATGCTAATAATCTTTATGGATGGGCAATGAGTCAAAAATTACCATACGATGATTTCAAATTTATGAATGCTGCAGAGTTTAGTGTGGAAATGTTAGAAAATCTCAATTCTCAAGGCAGAGGATGCATACTTGAAGTTGACTTAGATTATCCAGATAGTCTTCATGATAAGCATAATGATCTTCCATTTTGTCCAGAAAATAAACGAGTTGGTTCTACCAATAAATTAATTAATGATTTTAGTCCAAAAAGAAATTATGTGATTCATTATAAGAATTTACTACAAGTATTAGAGCATGGTTTAATGTTAAAAAAGGTTCATCGTATAGTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTTTCAGAAATGTGTCTCTTA</pcr_primer_p1>
		<pcr_primer_p2>GTATTTTGATTCCTCTTCAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAACTTTCAGAAATGTGTCTCTTAAAGAATACAAGTTAGATCCATGTTGGTACTATACATCTCCCGGATTAGCTTGGGAGGCAATGTTATTCAAAACTGGAGTTAAGCTACAAACAATTAAAGATATTGAAATGTATAACTTTATTGAGAAAGGTATCAGGGGAGGTATGTGTAATGCTATGTTGAGATATTCTAAGGCTAACAATAAGTACATGTCAAATTATAATCCTGAAGAGGAATCAAAATAC</canonical_amplicon>
		<polymorphic_amplicon>AAACTTTCAGAAATGTGTCTCTTAAAGAATACAAGTTAGATCCATGTTGGTACTATACATCTCCCGGATTAGCTTGGGAGGCAATGTTATTSAAAACTGGAGTTAAGCTACAAACAATTAAAGATATTGAAATGTATAACTTTATTGAGAAAGGTATCAGGGGAGGTATGTGTAATGCTATGTTGAGATATTCTAAGGCTAACAATAAGTACATGTCAAATTATAATCCTGAAGAGGAATCAAAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36914</snp_id>
        <super_contig>c011701044.Contig3</super_contig>
        <contig_pos>21426</contig_pos>
        <strand>-</strand>
        <context>CTACCGTCTT[A/T]TATGACGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTGGTTTTCAGAAATGAGAAAAAAATTCTTCAAATTTCTACCGTCTT</left_flank>
        <right_flank>TATGACGAAAAACACTGAAATGTGATAAAAAGAAAAAAACATGCCGCAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAGGACAAGCCCAAGATTTGCAGCTTTTGCGGCTACGGACACATCCCGGATAGGTGCCCAGTTTTCAGGACGGCAGATGCACGCTGGGAGTGCTTGAGACAACACAGCTTATGCCAAAAATGCCTCTCCTACCAACAACAAAGGCACCAGTGTCCTTCCGGTGTCCTAATCGATTTTGGATGCTACTACTGCAAGGAAGAGGTCCACAACTCAGCACTCTGCAGGATCCCAAAGACTGTGGTCGATACAAAATACTTCATGCCAGGTGGACCCAAAGACTCACGCGAAAGACAACCAACTCCAGATCTGAACATGAACACAGAAAACGACCAATATTATCAATGGGATCGACGTCGCCAACAGGAGCCAATTGATCAACGTCGCCATCGAGAAAGAGACCAAGGACCCTCTATTAACTCTGTTCTTTTTGTACATAAAATTTGAGAAATTTTGGTTTTCAGAAATGAGAAAAAAATTCTTCAAATTTCTACCGTCTTATATGACGAAAAACACTGAAATGTGATAAAAAGAAAAAAACATGCCGCAGAATTGCAAAGTCCTCACGCCGCGGTTCACAGAGGATTTTTTTCGCTTAAGTTTTTTTTTCAGCACTGGCATTTTTAAAAAAATTAAAAATTTAGATAACCGGAAATGAGATTTATGGTGGGGAATATAAGAAGAAAGGTAGATCATTTTATGAAGTATCATTAATTTAGATTTGAGGCGTCTATGACGGATAGAGACAAAATTGAGTAATTTGAGTCTGGACAAATAAGAGGCACCGGGGGGAAGATGAAAAGTATATGTTGTGGCAACTGTCGGAGAATTCGGAGCTTATATTTCGGTGCCACTTTCACCAAAGTCTCCAGAAGAACAAAAGTTTTTCGAAAAGTTTGCCTGTTCCACAGATTTCGTCCAGTTTCGTCTTGCCTTTTTACAATTCAGAAATTTTCTGTATGAATATTTCAGAAATTAATCAAAGTTATAGAAAGTGTTTA</canonical>
            <polymorphic>TTGAGGACAAGCCCAAGATTTGCAGCTTTTGCGGCTACGGACACATCCCGGATAGGTGCCCAGTTTTCAGGACGGCAGATGCACGCTGGGAGTGCTTGAGACAACACAGCTTATGCCAAAAATGCCTCTCCTACCAACAACAAAGGCACCAGTGTCCTTCCGGTGTCCTAATCGATTTTGGATGCTACTACTGCAAGGAAGAGGTCCACAACTCAGCACTCTGCAGGATCCCAAAGACTGTGGTCGATACAAAATACTTCATGCCAGGTGGACCCAAAGACTCACGCGAAAGACAACCAACTCCAGATCTGAACATGAACACAGAAAACGACCAATATTATCAATGGGATCGACGTCGCCAACAGGAGCCAATTGATCAACGTCGCCATCGAGAAAGAGACCAAGGACCCTCTATTAACTCTGTTCTTTTTGTACATAAAATTTGAGAAATTTTGGTTTTCAGAAATGAGAAAAAAATTCTTCAAATTTCTACCGTCTTWTATGACGAAAAACACTGAAATGTGATAAAAAGAAAAAAACATGCCGCAGAATTGCAAAGTCCTCACGCCGCGGTTCACAGAGGATTTTTTTCGCTTAAGTTTTTTTTTCAGCACTGGCATTTTTAAAAAAATTAAAAATTTAGATAACCGGAAATGAGATTTATGGTGGGGAATATAAGAAGAAAGGTAGATCATTTTATGAAGTATCATTAATTTAGATTTGAGGCGTCTATGACGGATAGAGACAAAATTGAGTAATTTGAGTCTGGACAAATAAGAGGCACCGGGGGGAAGATGAAAAGTATATGTTGTGGCAACTGTCGGAGAATTCGGAGCTTATATTTCGGTGCCACTTTCACCAAAGTCTCCAGAAGAACAAAAGTTTTTCGAAAAGTTTGCCTGTTCCACAGATTTCGTCCAGTTTCGTCTTGCCTTTTTACAATTCAGAAATTTTCTGTATGAATATTTCAGAAATTAATCAAAGTTATAGAAAGTGTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGAAAACGACCAATATTATCA</pcr_primer_p1>
		<pcr_primer_p2>GTGAGGACTTTGCAATTCTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACAGAAAACGACCAATATTATCAATGGGATCGACGTCGCCAACAGGAGCCAATTGATCAACGTCGCCATCGAGAAAGAGACCAAGGACCCTCTATTAACTCTGTTCTTTTTGTACATAAAATTTGAGAAATTTTGGTTTTCAGAAATGAGAAAAAAATTCTTCAAATTTCTACCGTCTTATATGACGAAAAACACTGAAATGTGATAAAAAGAAAAAAACATGCCGCAGAATTGCAAAGTCCTCAC</canonical_amplicon>
		<polymorphic_amplicon>ACAGAAAACGACCAATATTATCAATGGGATCGACGTCGCCAACAGGAGCCAATTGATCAACGTCGCCATCGAGAAAGAGACCAAGGACCCTCTATTAACTCTGTTCTTTTTGTACATAAAATTTGAGAAATTTTGGTTTTCAGAAATGAGAAAAAAATTCTTCAAATTTCTACCGTCTTWTATGACGAAAAACACTGAAATGTGATAAAAAGAAAAAAACATGCCGCAGAATTGCAAAGTCCTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36915</snp_id>
        <super_contig>c011701044.Contig3</super_contig>
        <contig_pos>21460</contig_pos>
        <strand>-</strand>
        <context>GATAAAAAGA[C/T]AAAAACATGC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTTCTACCGTCTTATATGACGAAAAACACTGAAATGTGATAAAAAGA</left_flank>
        <right_flank>AAAAACATGCCGCAGAATTGCAAAGTCCTCACGCCGCGGTTCACAGAGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACGGACACATCCCGGATAGGTGCCCAGTTTTCAGGACGGCAGATGCACGCTGGGAGTGCTTGAGACAACACAGCTTATGCCAAAAATGCCTCTCCTACCAACAACAAAGGCACCAGTGTCCTTCCGGTGTCCTAATCGATTTTGGATGCTACTACTGCAAGGAAGAGGTCCACAACTCAGCACTCTGCAGGATCCCAAAGACTGTGGTCGATACAAAATACTTCATGCCAGGTGGACCCAAAGACTCACGCGAAAGACAACCAACTCCAGATCTGAACATGAACACAGAAAACGACCAATATTATCAATGGGATCGACGTCGCCAACAGGAGCCAATTGATCAACGTCGCCATCGAGAAAGAGACCAAGGACCCTCTATTAACTCTGTTCTTTTTGTACATAAAATTTGAGAAATTTTGGTTTTCAGAAATGAGAAAAAAATTCTTCAAATTTCTACCGTCTTATATGACGAAAAACACTGAAATGTGATAAAAAGAAAAAAACATGCCGCAGAATTGCAAAGTCCTCACGCCGCGGTTCACAGAGGATTTTTTTCGCTTAAGTTTTTTTTTCAGCACTGGCATTTTTAAAAAAATTAAAAATTTAGATAACCGGAAATGAGATTTATGGTGGGGAATATAAGAAGAAAGGTAGATCATTTTATGAAGTATCATTAATTTAGATTTGAGGCGTCTATGACGGATAGAGACAAAATTGAGTAATTTGAGTCTGGACAAATAAGAGGCACCGGGGGGAAGATGAAAAGTATATGTTGTGGCAACTGTCGGAGAATTCGGAGCTTATATTTCGGTGCCACTTTCACCAAAGTCTCCAGAAGAACAAAAGTTTTTCGAAAAGTTTGCCTGTTCCACAGATTTCGTCCAGTTTCGTCTTGCCTTTTTACAATTCAGAAATTTTCTGTATGAATATTTCAGAAATTAATCAAAGTTATAGAAAGTGTTTATTTGATGGATCTGAAAATGATCTTGAATAAAAAA</canonical>
            <polymorphic>CTACGGACACATCCCGGATAGGTGCCCAGTTTTCAGGACGGCAGATGCACGCTGGGAGTGCTTGAGACAACACAGCTTATGCCAAAAATGCCTCTCCTACCAACAACAAAGGCACCAGTGTCCTTCCGGTGTCCTAATCGATTTTGGATGCTACTACTGCAAGGAAGAGGTCCACAACTCAGCACTCTGCAGGATCCCAAAGACTGTGGTCGATACAAAATACTTCATGCCAGGTGGACCCAAAGACTCACGCGAAAGACAACCAACTCCAGATCTGAACATGAACACAGAAAACGACCAATATTATCAATGGGATCGACGTCGCCAACAGGAGCCAATTGATCAACGTCGCCATCGAGAAAGAGACCAAGGACCCTCTATTAACTCTGTTCTTTTTGTACATAAAATTTGAGAAATTTTGGTTTTCAGAAATGAGAAAAAAATTCTTCAAATTTCTACCGTCTTATATGACGAAAAACACTGAAATGTGATAAAAAGAYAAAAACATGCCGCAGAATTGCAAAGTCCTCACGCCGCGGTTCACAGAGGATTTTTTTCGCTTAAGTTTTTTTTTCAGCACTGGCATTTTTAAAAAAATTAAAAATTTAGATAACCGGAAATGAGATTTATGGTGGGGAATATAAGAAGAAAGGTAGATCATTTTATGAAGTATCATTAATTTAGATTTGAGGCGTCTATGACGGATAGAGACAAAATTGAGTAATTTGAGTCTGGACAAATAAGAGGCACCGGGGGGAAGATGAAAAGTATATGTTGTGGCAACTGTCGGAGAATTCGGAGCTTATATTTCGGTGCCACTTTCACCAAAGTCTCCAGAAGAACAAAAGTTTTTCGAAAAGTTTGCCTGTTCCACAGATTTCGTCCAGTTTCGTCTTGCCTTTTTACAATTCAGAAATTTTCTGTATGAATATTTCAGAAATTAATCAAAGTTATAGAAAGTGTTTATTTGATGGATCTGAAAATGATCTTGAATAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTCAAATTTCTACCGTCTT</pcr_primer_p1>
		<pcr_primer_p2>AAATATAAGCTCCGAATTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>368</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTCAAATTTCTACCGTCTTATATGACGAAAAACACTGAAATGTGATAAAAAGAAAAAAACATGCCGCAGAATTGCAAAGTCCTCACGCCGCGGTTCACAGAGGATTTTTTTCGCTTAAGTTTTTTTTTCAGCACTGGCATTTTTAAAAAAATTAAAAATTTAGATAACCGGAAATGAGATTTATGGTGGGGAATATAAGAAGAAAGGTAGATCATTTTATGAAGTATCATTAATTTAGATTTGAGGCGTCTATGACGGATAGAGACAAAATTGAGTAATTTGAGTCTGGACAAATAAGAGGCACCGGGGGGAAGATGAAAAGTATATGTTGTGGCAACTGTCGGAGAATTCGGAGCTTATATTT</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTCAAATTTCTACCGTCTTATATGACGAAAAACACTGAAATGTGATAAAAAGAYAAAAACATGCCGCAGAATTGCAAAGTCCTCACGCCGCGGTTCACAGAGGATTTTTTTCGCTTAAGTTTTTTTTTCAGCACTGGCATTTTTAAAAAAATTAAAAATTTAGATAACCGGAAATGAGATTTATGGTGGGGAATATAAGAAGAAAGGTAGATCATTTTATGAAGTATCATTAATTTAGATTTGAGGCGTCTATGACGGATAGAGACAAAATTGAGTAATTTGAGTCTGGACAAATAAGAGGCACCGGGGGGAAGATGAAAAGTATATGTTGTGGCAACTGTCGGAGAATTCGGAGCTTATATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36916</snp_id>
        <super_contig>c011701044.Contig3</super_contig>
        <contig_pos>23441</contig_pos>
        <strand>-</strand>
        <context>CTTTCTTGTC[A/T]TAAATTCAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGGCATTTGAAAATCGACTATTATCCTGTGACCTAAACCACTTTCTTGTC</left_flank>
        <right_flank>TAAATTCAACTAATTACTAACTCGGTTTTTTCTCCATATCCCATTTAATA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGGACGCCCGATTGTATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAAAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAAACGGAGATAAAAAATATATTACAAAAAAAGTGGAATTTAAAAAATGGAGAATACGTATCATAATCAACTCTTACAAGGGAACATCTTAAGTAACAAGCGAAAAATCTAGCGAAACCACATCTTTAGGATCAAAATGTTCTTTCTCATTTTAGGTCACTCGTCAAGAACTCAACGAAAATATCTTCTCAATTTCTCTCGAATAGAGTAATCAGAAGTTGAAACTATTTACCCGCTGAAGTGCTTCCGGTGAAGCCCTCGTCAGCGGCATTTGAAAATCGACTATTATCCTGTGACCTAAACCACTTTCTTGTCTTAAATTCAACTAATTACTAACTCGGTTTTTTCTCCATATCCCATTTAATACAAATTTATATCTCTGTTATCTCTTCTAGATTCTTCCCTTCGTGGGAATTAATAAATATTAAAAAAAATCGGCACACTTATTTCTACAGGAAAAAAAAGTTCTCGAGTGATAATTGAACTCTTATTGATCCAAATTGAAATGTTTTGGTTTTTTGTTCAATTCCCAACTAAATACATACAGCAAGAATGACATTGGGTAGAACGATCCTCACCACTGCACCAATCTCTGGGGCATTTCTCATGGGAAGAATTAGCTCTTCACACTTCAATTCGAAATTATTACTGTAATAAAAACTAGAATTATTGTACTTAATCCACCAATGTGTGATACTCGATGTCACCAGTCCACCTAGTTTTTGACTCCGCCCCCTTGAGAATGTTGGTATAAATACGCTCCGGTACCTACGATTAGCATTCATTCTCCCCCTAATTTTTCAGACGACCTTCTGC</canonical>
            <polymorphic>GAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGGACGCCCGATTGTATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAAAATGCATACTCTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAAAACGGAGATAAAAAATATATTACAAAAAAAGTGGAATTTAAAAAATGGAGAATACGTATCATAATCAACTCTTACAAGGGAACATCTTAAGTAACAAGCGAAAAATCTAGCGAAACCACATCTTTAGGATCAAAATGTTCTTTCTCATTTTAGGTCACTCGTCAAGAACTCAACGAAAATATCTTCTCAATTTCTCTCGAATAGAGTAATCAGAAGTTGAAACTATTTACCCGCTGAAGTGCTTCCGGTGAAGCCCTCGTCAGCGGCATTTGAAAATCGACTATTATCCTGTGACCTAAACCACTTTCTTGTCWTAAATTCAACTAATTACTAACTCGGTTTTTTCTCCATATCCCATTTAATACAAATTTATATCTCTGTTATCTCTTCTAGATTCTTCCCTTCGTGGGAATTAATAAATATTAAAAAAAATCGGCACACTTATTTCTACAGGAAAAAAAAGTTCTCGAGTGATAATTGAACTCTTATTGATCCAAATTGAAATGTTTTGGTTTTTTGTTCAATTCCCAACTAAATACATACAGCAAGAATGACATTGGGTAGAACGATCCTCACCACTGCACCAATCTCTGGGGCATTTCTCATGGGAAGAATTAGCTCTTCACACTTCAATTCGAAATTATTACTGTAATAAAAACTAGAATTATTGTACTTAATCCACCAATGTGTGATACTCGATGTCACCAGTCCACCTAGTTTTTGACTCCGCCCCCTTGAGAATGTTGGTATAAATACGCTCCGGTACCTACGATTAGCATTCATTCTCCCCCTAATTTTTCAGACGACCTTCTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>251 227 140 103 79 54 49 45 42 10</canonical_bands>
                <polymorphic_bands>272 251 140 103 79 54 49 42 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGGATCAAAATGTTCTTTCTCA</pcr_primer_p1>
		<pcr_primer_p2>AAATTTGTATTAAATGGGATATGG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TAGGATCAAAATGTTCTTTCTCATTTTAGGTCACTCGTCAAGAACTCAACGAAAATATCTTCTCAATTTCTCTCGAATAGAGTAATCAGAAGTTGAAACTATTTACCCGCTGAAGTGCTTCCGGTGAAGCCCTCGTCAGCGGCATTTGAAAATCGACTATTATCCTGTGACCTAAACCACTTTCTTGTCTTAAATTCAACTAATTACTAACTCGGTTTTTTCTCCATATCCCATTTAATACAAATTT</canonical_amplicon>
		<polymorphic_amplicon>TAGGATCAAAATGTTCTTTCTCATTTTAGGTCACTCGTCAAGAACTCAACGAAAATATCTTCTCAATTTCTCTCGAATAGAGTAATCAGAAGTTGAAACTATTTACCCGCTGAAGTGCTTCCGGTGAAGCCCTCGTCAGCGGCATTTGAAAATCGACTATTATCCTGTGACCTAAACCACTTTCTTGTCWTAAATTCAACTAATTACTAACTCGGTTTTTTCTCCATATCCCATTTAATACAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36917</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>21065</contig_pos>
        <strand>+</strand>
        <context>ATGATTAAGA[G/T]AAAAAATGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAGAAGCAGCGGGGGGAAAAGATCGGGAATTCAAATATTATGATTAAGA</left_flank>
        <right_flank>AAAAAATGATAAAACTAAAAGAAAAGGGAAAATGTACAGATTTTCGGACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCATGTCTGGCCTCCTTTAAATTATCCATAAATAGCTCGAATTACCGTAAAACCTGTATTAGAAGGGCCCTCCAGAGGTATTCTGAAAAAAAATAGAAGGGCCCCTCTAATACAGGTTTTACGGTAGTTTTAAAGCTAGAAATAGCTCAAATTAACTCTAAATTCGTTGCAGGAAGGTCGTGAAGCACTCCCAAAGGCCGCCTATCAATACGGAGTCAAAAATGGAGAGGGAGGACGAAAGAATAAGAAGCAAACGGCTGTCTCAGAGGCCAAGAAACTGGACCGAGAGCTCAACGAGATCAATAAGATTATGGATAAGAGAAAGGCCGGAGAAGGAGGCGGTGGAGAGTATAAGAAGCCTAAATATTGATCTTTTCTGTTTAAAGTATTTTTAAGTTATAAAATTATTAATCAATTTAATATCAAATCAGAGAAAAAAGTGGGACAGAAGAAGCAGCGGGGGGAAAAGATCGGGAATTCAAATATTATGATTAAGAGAAAAAATGATAAAACTAAAAGAAAAGGGAAAATGTACAGATTTTCGGACACACAGAGAAATATACATTCAAATCAAACTGGAACTAGAATTAATCGGAATCCGTCGTCAACTCCACAAAGTCAGTCGAATCAAAGTCTTCTGAATAGTCAGAAGACGTCACGGAGGAAGGTCCGGGGGCCGAGCCATCGGCGTTTCGGTATTCTGAAGTCTCTGACGACGTGACGATGGTGGACGGCTTCTTGCATAGCTCTTCACTCTCATCCATCGAGAGTTTTAGAAGCTCGCCGGCGGTGATTTCCATGATTTCGGGCTGCTTTTTCTTGTTCATCATATCAGTGACGTCGTGGATGAGGGCTTTGGGAACCATAATGTACGTGTAGCCGATGGCAAGAGGGACGCCGAGTACTGAGAAAAAATTGGATTTGGGGTGGAAAATTTGGGGAATTTTCGAAATAAATTTCGAATTTGAGGCAAAAATACCTTCAGAAACATGCTTGAC</canonical>
            <polymorphic>TTTCATGTCTGGCCTCCTTTAAATTATCCATAAATAGCTCGAATTACCGTAAAACCTGTATTAGAAGGGCCCTCCAGAGGTATTCTGAAAAAAAATAGAAGGGCCCCTCTAATACAGGTTTTACGGTAGTTTTAAAGCTAGAAATAGCTCAAATTAACTCTAAATTCGTTGCAGGAAGGTCGTGAAGCACTCCCAAAGGCCGCCTATCAATACGGAGTCAAAAATGGAGAGGGAGGACGAAAGAATAAGAAGCAAACGGCTGTCTCAGAGGCCAAGAAACTGGACCGAGAGCTCAACGAGATCAATAAGATTATGGATAAGAGAAAGGCCGGAGAAGGAGGCGGTGGAGAGTATAAGAAGCCTAAATATTGATCTTTTCTGTTTAAAGTATTTTTAAGTTATAAAATTATTAATCAATTTAATATCAAATCAGAGAAAAAAGTGGGACAGAAGAAGCAGCGGGGGGAAAAGATCGGGAATTCAAATATTATGATTAAGAKAAAAAATGATAAAACTAAAAGAAAAGGGAAAATGTACAGATTTTCGGACACACAGAGAAATATACATTCAAATCAAACTGGAACTAGAATTAATCGGAATCCGTCGTCAACTCCACAAAGTCAGTCGAATCAAAGTCTTCTGAATAGTCAGAAGACGTCACGGAGGAAGGTCCGGGGGCCGAGCCATCGGCGTTTCGGTATTCTGAAGTCTCTGACGACGTGACGATGGTGGACGGCTTCTTGCATAGCTCTTCACTCTCATCCATCGAGAGTTTTAGAAGCTCGCCGGCGGTGATTTCCATGATTTCGGGCTGCTTTTTCTTGTTCATCATATCAGTGACGTCGTGGATGAGGGCTTTGGGAACCATAATGTACGTGTAGCCGATGGCAAGAGGGACGCCGAGTACTGAGAAAAAATTGGATTTGGGGTGGAAAATTTGGGGAATTTTCGAAATAAATTTCGAATTTGAGGCAAAAATACCTTCAGAAACATGCTTGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGGAGAGTATAAGAAGCCTAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAATGTATATTTCTCTGTGTGTC</pcr_primer_p2>
		<pcr_amplicon_size>229</pcr_amplicon_size>
		<canonical_amplicon>GGTGGAGAGTATAAGAAGCCTAAATATTGATCTTTTCTGTTTAAAGTATTTTTAAGTTATAAAATTATTAATCAATTTAATATCAAATCAGAGAAAAAAGTGGGACAGAAGAAGCAGCGGGGGGAAAAGATCGGGAATTCAAATATTATGATTAAGAGAAAAAATGATAAAACTAAAAGAAAAGGGAAAATGTACAGATTTTCGGACACACAGAGAAATATACATTCAA</canonical_amplicon>
		<polymorphic_amplicon>GGTGGAGAGTATAAGAAGCCTAAATATTGATCTTTTCTGTTTAAAGTATTTTTAAGTTATAAAATTATTAATCAATTTAATATCAAATCAGAGAAAAAAGTGGGACAGAAGAAGCAGCGGGGGGAAAAGATCGGGAATTCAAATATTATGATTAAGAKAAAAAATGATAAAACTAAAAGAAAAGGGAAAATGTACAGATTTTCGGACACACAGAGAAATATACATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36918</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>22911</contig_pos>
        <strand>+</strand>
        <context>TTTAAAATAC[C/G]ATATTTTGGC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATTAGAGATTTTTGACATCAAAAATTTAAAATGCTGGCTTTTAAAATAC</left_flank>
        <right_flank>ATATTTTGGCTGAAATTTTCGGATTTTCGGCATTAATAAAGCGAAAATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAAACAATATTTTATAGGTTACTGTAGTTGTCGTTGCGGGACCTTGATCTTGCATTTTTGTACCAGAATGATAGCAATGGCGAAAATTAGGTTAAAAACAAGGTCAAGCAGGAAATTAACCCTAAAAAACTTAATTACCCGCAGTCTGGCGCTGGACAAAAACGCATGTCGTCCATAGTCATGAGCACTCGGCGCACACTGAACATCTCATATTTTTCGTACAGAATCCGGTCGTCGTCGGTGATGATTCTGGAAAAATAGGATTTTGGCATTGAGAATATGAAATTTTGGCTTTAACGGTAAGAAATTTTGCCTTAAAGTACGGATTTTTGACGTTAAAAATACAACATTGTGGCTTAAAATTGATGATTTTTGACATAAAAAATATGAAATTTCGGCTCAAAATTACGAATTTTCGACTCTGTTAATACGAAACTTCGGCTTACAATTAGAGATTTTTGACATCAAAAATTTAAAATGCTGGCTTTTAAAATACGATATTTTGGCTGAAATTTTCGGATTTTCGGCATTAATAAAGCGAAAATTCGGCTTAAAATTGTTGATTTTCGGCTTTAAAAATATGGAATTTTGGATCTAAACTACGTAATTTTGTATTTAAAAACACGAAATTTTGGCTCTAAAAATACGACATTTTGGCTTTAAAGTACTGATTTTTGACTTAAAAAATATGGAATTTTGGTTCTGAAAATATGAAACTTTGGCTTAAAATTGCTGATTTCTGACATCAAAAATGTGAAAATTGGCTTTGAAAATACAAATTTTTGACGTTAAAAATACAAAATTTTGGCTTAAAATTGATGATTTTTGGCTTTAAAAATATGAAGTTTTGGCTCAAAATTACTGTTTTTTGACATTAAAAATATGGATTTTCGGCTCAAAATTACTGATTTTTGACATAAAAAATATGAAATTTCGGATCAAAATTACGGATTTTTGACATAAAAAATATGAAATTTCGGCTCAAAATTACTGAAAA</canonical>
            <polymorphic>GAAAAAACAATATTTTATAGGTTACTGTAGTTGTCGTTGCGGGACCTTGATCTTGCATTTTTGTACCAGAATGATAGCAATGGCGAAAATTAGGTTAAAAACAAGGTCAAGCAGGAAATTAACCCTAAAAAACTTAATTACCCGCAGTCTGGCGCTGGACAAAAACGCATGTCGTCCATAGTCATGAGCACTCGGCGCACACTGAACATCTCATATTTTTCGTACAGAATCCGGTCGTCGTCGGTGATGATTCTGGAAAAATAGGATTTTGGCATTGAGAATATGAAATTTTGGCTTTAACGGTAAGAAATTTTGCCTTAAAGTACGGATTTTTGACGTTAAAAATACAACATTGTGGCTTAAAATTGATGATTTTTGACATAAAAAATATGAAATTTCGGCTCAAAATTACGAATTTTCGACTCTGTTAATACGAAACTTCGGCTTACAATTAGAGATTTTTGACATCAAAAATTTAAAATGCTGGCTTTTAAAATACSATATTTTGGCTGAAATTTTCGGATTTTCGGCATTAATAAAGCGAAAATTCGGCTTAAAATTGTTGATTTTCGGCTTTAAAAATATGGAATTTTGGATCTAAACTACGTAATTTTGTATTTAAAAACACGAAATTTTGGCTCTAAAAATACGACATTTTGGCTTTAAAGTACTGATTTTTGACTTAAAAAATATGGAATTTTGGTTCTGAAAATATGAAACTTTGGCTTAAAATTGCTGATTTCTGACATCAAAAATGTGAAAATTGGCTTTGAAAATACAAATTTTTGACGTTAAAAATACAAAATTTTGGCTTAAAATTGATGATTTTTGGCTTTAAAAATATGAAGTTTTGGCTCAAAATTACTGTTTTTTGACATTAAAAATATGGATTTTCGGCTCAAAATTACTGATTTTTGACATAAAAAATATGAAATTTCGGATCAAAATTACGGATTTTTGACATAAAAAATATGAAATTTCGGCTCAAAATTACTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATTTTCGACTCTGTTAATAC</pcr_primer_p1>
		<pcr_primer_p2>AAGCCAAAATGTCGTATTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGAATTTTCGACTCTGTTAATACGAAACTTCGGCTTACAATTAGAGATTTTTGACATCAAAAATTTAAAATGCTGGCTTTTAAAATACGATATTTTGGCTGAAATTTTCGGATTTTCGGCATTAATAAAGCGAAAATTCGGCTTAAAATTGTTGATTTTCGGCTTTAAAAATATGGAATTTTGGATCTAAACTACGTAATTTTGTATTTAAAAACACGAAATTTTGGCTCTAAAAATACGACATTTTGGCTT</canonical_amplicon>
		<polymorphic_amplicon>CGAATTTTCGACTCTGTTAATACGAAACTTCGGCTTACAATTAGAGATTTTTGACATCAAAAATTTAAAATGCTGGCTTTTAAAATACSATATTTTGGCTGAAATTTTCGGATTTTCGGCATTAATAAAGCGAAAATTCGGCTTAAAATTGTTGATTTTCGGCTTTAAAAATATGGAATTTTGGATCTAAACTACGTAATTTTGTATTTAAAAACACGAAATTTTGGCTCTAAAAATACGACATTTTGGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36919</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>22939</contig_pos>
        <strand>+</strand>
        <context>TTCGGATTTT[C/T]GRCATWAATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATGCTGGCTTTTAAAATACGATATTTTGGCTGAAATTTTCGGATTTT</left_flank>
        <right_flank>GGCATTAATAAAGCGAAAATTCGGCTTAAAATTGTTGATTTTCGGCTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTGTCGTTGCGGGACCTTGATCTTGCATTTTTGTACCAGAATGATAGCAATGGCGAAAATTAGGTTAAAAACAAGGTCAAGCAGGAAATTAACCCTAAAAAACTTAATTACCCGCAGTCTGGCGCTGGACAAAAACGCATGTCGTCCATAGTCATGAGCACTCGGCGCACACTGAACATCTCATATTTTTCGTACAGAATCCGGTCGTCGTCGGTGATGATTCTGGAAAAATAGGATTTTGGCATTGAGAATATGAAATTTTGGCTTTAACGGTAAGAAATTTTGCCTTAAAGTACGGATTTTTGACGTTAAAAATACAACATTGTGGCTTAAAATTGATGATTTTTGACATAAAAAATATGAAATTTCGGCTCAAAATTACGAATTTTCGACTCTGTTAATACGAAACTTCGGCTTACAATTAGAGATTTTTGACATCAAAAATTTAAAATGCTGGCTTTTAAAATACGATATTTTGGCTGAAATTTTCGGATTTTCGGCATTAATAAAGCGAAAATTCGGCTTAAAATTGTTGATTTTCGGCTTTAAAAATATGGAATTTTGGATCTAAACTACGTAATTTTGTATTTAAAAACACGAAATTTTGGCTCTAAAAATACGACATTTTGGCTTTAAAGTACTGATTTTTGACTTAAAAAATATGGAATTTTGGTTCTGAAAATATGAAACTTTGGCTTAAAATTGCTGATTTCTGACATCAAAAATGTGAAAATTGGCTTTGAAAATACAAATTTTTGACGTTAAAAATACAAAATTTTGGCTTAAAATTGATGATTTTTGGCTTTAAAAATATGAAGTTTTGGCTCAAAATTACTGTTTTTTGACATTAAAAATATGGATTTTCGGCTCAAAATTACTGATTTTTGACATAAAAAATATGAAATTTCGGATCAAAATTACGGATTTTTGACATAAAAAATATGAAATTTCGGCTCAAAATTACTGAAAATTACTGATTTTTGACATAAAAAATATGG</canonical>
            <polymorphic>AGTTGTCGTTGCGGGACCTTGATCTTGCATTTTTGTACCAGAATGATAGCAATGGCGAAAATTAGGTTAAAAACAAGGTCAAGCAGGAAATTAACCCTAAAAAACTTAATTACCCGCAGTCTGGCGCTGGACAAAAACGCATGTCGTCCATAGTCATGAGCACTCGGCGCACACTGAACATCTCATATTTTTCGTACAGAATCCGGTCGTCGTCGGTGATGATTCTGGAAAAATAGGATTTTGGCATTGAGAATATGAAATTTTGGCTTTAACGGTAAGAAATTTTGCCTTAAAGTACGGATTTTTGACGTTAAAAATACAACATTGTGGCTTAAAATTGATGATTTTTGACATAAAAAATATGAAATTTCGGCTCAAAATTACGAATTTTCGACTCTGTTAATACGAAACTTCGGCTTACAATTAGAGATTTTTGACATCAAAAATTTAAAATGCTGGCTTTTAAAATACGATATTTTGGCTGAAATTTTCGGATTTTYGGCATTAATAAAGCGAAAATTCGGCTTAAAATTGTTGATTTTCGGCTTTAAAAATATGGAATTTTGGATCTAAACTACGTAATTTTGTATTTAAAAACACGAAATTTTGGCTCTAAAAATACGACATTTTGGCTTTAAAGTACTGATTTTTGACTTAAAAAATATGGAATTTTGGTTCTGAAAATATGAAACTTTGGCTTAAAATTGCTGATTTCTGACATCAAAAATGTGAAAATTGGCTTTGAAAATACAAATTTTTGACGTTAAAAATACAAAATTTTGGCTTAAAATTGATGATTTTTGGCTTTAAAAATATGAAGTTTTGGCTCAAAATTACTGTTTTTTGACATTAAAAATATGGATTTTCGGCTCAAAATTACTGATTTTTGACATAAAAAATATGAAATTTCGGATCAAAATTACGGATTTTTGACATAAAAAATATGAAATTTCGGCTCAAAATTACTGAAAATTACTGATTTTTGACATAAAAAATATGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATTTTCGACTCTGTTAATAC</pcr_primer_p1>
		<pcr_primer_p2>AAGCCAAAATGTCGTATTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGAATTTTCGACTCTGTTAATACGAAACTTCGGCTTACAATTAGAGATTTTTGACATCAAAAATTTAAAATGCTGGCTTTTAAAATACGATATTTTGGCTGAAATTTTCGGATTTTCGGCATTAATAAAGCGAAAATTCGGCTTAAAATTGTTGATTTTCGGCTTTAAAAATATGGAATTTTGGATCTAAACTACGTAATTTTGTATTTAAAAACACGAAATTTTGGCTCTAAAAATACGACATTTTGGCTT</canonical_amplicon>
		<polymorphic_amplicon>CGAATTTTCGACTCTGTTAATACGAAACTTCGGCTTACAATTAGAGATTTTTGACATCAAAAATTTAAAATGCTGGCTTTTAAAATACGATATTTTGGCTGAAATTTTCGGATTTTYGGCATTAATAAAGCGAAAATTCGGCTTAAAATTGTTGATTTTCGGCTTTAAAAATATGGAATTTTGGATCTAAACTACGTAATTTTGTATTTAAAAACACGAAATTTTGGCTCTAAAAATACGACATTTTGGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36920</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>22941</contig_pos>
        <strand>+</strand>
        <context>CGGATTTTYG[A/G]CATWAATAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGCTGGCTTTTAAAATACGATATTTTGGCTGAAATTTTCGGATTTTCG</left_flank>
        <right_flank>CATTAATAAAGCGAAAATTCGGCTTAAAATTGTTGATTTTCGGCTTTAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTCGTTGCGGGACCTTGATCTTGCATTTTTGTACCAGAATGATAGCAATGGCGAAAATTAGGTTAAAAACAAGGTCAAGCAGGAAATTAACCCTAAAAAACTTAATTACCCGCAGTCTGGCGCTGGACAAAAACGCATGTCGTCCATAGTCATGAGCACTCGGCGCACACTGAACATCTCATATTTTTCGTACAGAATCCGGTCGTCGTCGGTGATGATTCTGGAAAAATAGGATTTTGGCATTGAGAATATGAAATTTTGGCTTTAACGGTAAGAAATTTTGCCTTAAAGTACGGATTTTTGACGTTAAAAATACAACATTGTGGCTTAAAATTGATGATTTTTGACATAAAAAATATGAAATTTCGGCTCAAAATTACGAATTTTCGACTCTGTTAATACGAAACTTCGGCTTACAATTAGAGATTTTTGACATCAAAAATTTAAAATGCTGGCTTTTAAAATACGATATTTTGGCTGAAATTTTCGGATTTTCGGCATTAATAAAGCGAAAATTCGGCTTAAAATTGTTGATTTTCGGCTTTAAAAATATGGAATTTTGGATCTAAACTACGTAATTTTGTATTTAAAAACACGAAATTTTGGCTCTAAAAATACGACATTTTGGCTTTAAAGTACTGATTTTTGACTTAAAAAATATGGAATTTTGGTTCTGAAAATATGAAACTTTGGCTTAAAATTGCTGATTTCTGACATCAAAAATGTGAAAATTGGCTTTGAAAATACAAATTTTTGACGTTAAAAATACAAAATTTTGGCTTAAAATTGATGATTTTTGGCTTTAAAAATATGAAGTTTTGGCTCAAAATTACTGTTTTTTGACATTAAAAATATGGATTTTCGGCTCAAAATTACTGATTTTTGACATAAAAAATATGAAATTTCGGATCAAAATTACGGATTTTTGACATAAAAAATATGAAATTTCGGCTCAAAATTACTGAAAATTACTGATTTTTGACATAAAAAATATGGAT</canonical>
            <polymorphic>TTGTCGTTGCGGGACCTTGATCTTGCATTTTTGTACCAGAATGATAGCAATGGCGAAAATTAGGTTAAAAACAAGGTCAAGCAGGAAATTAACCCTAAAAAACTTAATTACCCGCAGTCTGGCGCTGGACAAAAACGCATGTCGTCCATAGTCATGAGCACTCGGCGCACACTGAACATCTCATATTTTTCGTACAGAATCCGGTCGTCGTCGGTGATGATTCTGGAAAAATAGGATTTTGGCATTGAGAATATGAAATTTTGGCTTTAACGGTAAGAAATTTTGCCTTAAAGTACGGATTTTTGACGTTAAAAATACAACATTGTGGCTTAAAATTGATGATTTTTGACATAAAAAATATGAAATTTCGGCTCAAAATTACGAATTTTCGACTCTGTTAATACGAAACTTCGGCTTACAATTAGAGATTTTTGACATCAAAAATTTAAAATGCTGGCTTTTAAAATACGATATTTTGGCTGAAATTTTCGGATTTTCGRCATTAATAAAGCGAAAATTCGGCTTAAAATTGTTGATTTTCGGCTTTAAAAATATGGAATTTTGGATCTAAACTACGTAATTTTGTATTTAAAAACACGAAATTTTGGCTCTAAAAATACGACATTTTGGCTTTAAAGTACTGATTTTTGACTTAAAAAATATGGAATTTTGGTTCTGAAAATATGAAACTTTGGCTTAAAATTGCTGATTTCTGACATCAAAAATGTGAAAATTGGCTTTGAAAATACAAATTTTTGACGTTAAAAATACAAAATTTTGGCTTAAAATTGATGATTTTTGGCTTTAAAAATATGAAGTTTTGGCTCAAAATTACTGTTTTTTGACATTAAAAATATGGATTTTCGGCTCAAAATTACTGATTTTTGACATAAAAAATATGAAATTTCGGATCAAAATTACGGATTTTTGACATAAAAAATATGAAATTTCGGCTCAAAATTACTGAAAATTACTGATTTTTGACATAAAAAATATGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATTTTCGACTCTGTTAATAC</pcr_primer_p1>
		<pcr_primer_p2>AAGCCAAAATGTCGTATTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGAATTTTCGACTCTGTTAATACGAAACTTCGGCTTACAATTAGAGATTTTTGACATCAAAAATTTAAAATGCTGGCTTTTAAAATACGATATTTTGGCTGAAATTTTCGGATTTTCGGCATTAATAAAGCGAAAATTCGGCTTAAAATTGTTGATTTTCGGCTTTAAAAATATGGAATTTTGGATCTAAACTACGTAATTTTGTATTTAAAAACACGAAATTTTGGCTCTAAAAATACGACATTTTGGCTT</canonical_amplicon>
		<polymorphic_amplicon>CGAATTTTCGACTCTGTTAATACGAAACTTCGGCTTACAATTAGAGATTTTTGACATCAAAAATTTAAAATGCTGGCTTTTAAAATACGATATTTTGGCTGAAATTTTCGGATTTTCGRCATTAATAAAGCGAAAATTCGGCTTAAAATTGTTGATTTTCGGCTTTAAAAATATGGAATTTTGGATCTAAACTACGTAATTTTGTATTTAAAAACACGAAATTTTGGCTCTAAAAATACGACATTTTGGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36921</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>22945</contig_pos>
        <strand>+</strand>
        <context>TTTTYGRCAT[A/T]AATAAAGCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGGCTTTTAAAATACGATATTTTGGCTGAAATTTTCGGATTTTCGGCAT</left_flank>
        <right_flank>AATAAAGCGAAAATTCGGCTTAAAATTGTTGATTTTCGGCTTTAAAAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTGCGGGACCTTGATCTTGCATTTTTGTACCAGAATGATAGCAATGGCGAAAATTAGGTTAAAAACAAGGTCAAGCAGGAAATTAACCCTAAAAAACTTAATTACCCGCAGTCTGGCGCTGGACAAAAACGCATGTCGTCCATAGTCATGAGCACTCGGCGCACACTGAACATCTCATATTTTTCGTACAGAATCCGGTCGTCGTCGGTGATGATTCTGGAAAAATAGGATTTTGGCATTGAGAATATGAAATTTTGGCTTTAACGGTAAGAAATTTTGCCTTAAAGTACGGATTTTTGACGTTAAAAATACAACATTGTGGCTTAAAATTGATGATTTTTGACATAAAAAATATGAAATTTCGGCTCAAAATTACGAATTTTCGACTCTGTTAATACGAAACTTCGGCTTACAATTAGAGATTTTTGACATCAAAAATTTAAAATGCTGGCTTTTAAAATACGATATTTTGGCTGAAATTTTCGGATTTTCGGCATTAATAAAGCGAAAATTCGGCTTAAAATTGTTGATTTTCGGCTTTAAAAATATGGAATTTTGGATCTAAACTACGTAATTTTGTATTTAAAAACACGAAATTTTGGCTCTAAAAATACGACATTTTGGCTTTAAAGTACTGATTTTTGACTTAAAAAATATGGAATTTTGGTTCTGAAAATATGAAACTTTGGCTTAAAATTGCTGATTTCTGACATCAAAAATGTGAAAATTGGCTTTGAAAATACAAATTTTTGACGTTAAAAATACAAAATTTTGGCTTAAAATTGATGATTTTTGGCTTTAAAAATATGAAGTTTTGGCTCAAAATTACTGTTTTTTGACATTAAAAATATGGATTTTCGGCTCAAAATTACTGATTTTTGACATAAAAAATATGAAATTTCGGATCAAAATTACGGATTTTTGACATAAAAAATATGAAATTTCGGCTCAAAATTACTGAAAATTACTGATTTTTGACATAAAAAATATGGATTTTT</canonical>
            <polymorphic>CGTTGCGGGACCTTGATCTTGCATTTTTGTACCAGAATGATAGCAATGGCGAAAATTAGGTTAAAAACAAGGTCAAGCAGGAAATTAACCCTAAAAAACTTAATTACCCGCAGTCTGGCGCTGGACAAAAACGCATGTCGTCCATAGTCATGAGCACTCGGCGCACACTGAACATCTCATATTTTTCGTACAGAATCCGGTCGTCGTCGGTGATGATTCTGGAAAAATAGGATTTTGGCATTGAGAATATGAAATTTTGGCTTTAACGGTAAGAAATTTTGCCTTAAAGTACGGATTTTTGACGTTAAAAATACAACATTGTGGCTTAAAATTGATGATTTTTGACATAAAAAATATGAAATTTCGGCTCAAAATTACGAATTTTCGACTCTGTTAATACGAAACTTCGGCTTACAATTAGAGATTTTTGACATCAAAAATTTAAAATGCTGGCTTTTAAAATACGATATTTTGGCTGAAATTTTCGGATTTTCGGCATWAATAAAGCGAAAATTCGGCTTAAAATTGTTGATTTTCGGCTTTAAAAATATGGAATTTTGGATCTAAACTACGTAATTTTGTATTTAAAAACACGAAATTTTGGCTCTAAAAATACGACATTTTGGCTTTAAAGTACTGATTTTTGACTTAAAAAATATGGAATTTTGGTTCTGAAAATATGAAACTTTGGCTTAAAATTGCTGATTTCTGACATCAAAAATGTGAAAATTGGCTTTGAAAATACAAATTTTTGACGTTAAAAATACAAAATTTTGGCTTAAAATTGATGATTTTTGGCTTTAAAAATATGAAGTTTTGGCTCAAAATTACTGTTTTTTGACATTAAAAATATGGATTTTCGGCTCAAAATTACTGATTTTTGACATAAAAAATATGAAATTTCGGATCAAAATTACGGATTTTTGACATAAAAAATATGAAATTTCGGCTCAAAATTACTGAAAATTACTGATTTTTGACATAAAAAATATGGATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>163 156 68 65 61 48 44 44 43 43 42 24 22 22 21 21 21 21 21 20 15 15</canonical_bands>
                <polymorphic_bands>163 156 68 65 63 61 48 44 44 43 43 24 22 22 21 21 21 21 20 15 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAATTTTCGACTCTGTTAATAC</pcr_primer_p1>
		<pcr_primer_p2>AAGCCAAAATGTCGTATTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CGAATTTTCGACTCTGTTAATACGAAACTTCGGCTTACAATTAGAGATTTTTGACATCAAAAATTTAAAATGCTGGCTTTTAAAATACGATATTTTGGCTGAAATTTTCGGATTTTCGGCATTAATAAAGCGAAAATTCGGCTTAAAATTGTTGATTTTCGGCTTTAAAAATATGGAATTTTGGATCTAAACTACGTAATTTTGTATTTAAAAACACGAAATTTTGGCTCTAAAAATACGACATTTTGGCTT</canonical_amplicon>
		<polymorphic_amplicon>CGAATTTTCGACTCTGTTAATACGAAACTTCGGCTTACAATTAGAGATTTTTGACATCAAAAATTTAAAATGCTGGCTTTTAAAATACGATATTTTGGCTGAAATTTTCGGATTTTCGGCATWAATAAAGCGAAAATTCGGCTTAAAATTGTTGATTTTCGGCTTTAAAAATATGGAATTTTGGATCTAAACTACGTAATTTTGTATTTAAAAACACGAAATTTTGGCTCTAAAAATACGACATTTTGGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36922</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>29551</contig_pos>
        <strand></strand>
        <context>catgaaagtt[A/G]gtggcctagg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGTGGTCCCTAGTTTTTGCATGTTGAGTTTTCTAGGGGACATGAAAGTT</left_flank>
        <right_flank>GTGGCCTAGGAAACTCAACATGCTAAATTTAGGGCACCACGTTGAAATGA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGCAGAGATCCATTGAGGATGCGGCGTTAAAGTAAGGAAAAAGCATCATCGAAATTTGCTAAACTAAAATTTCGTAGAAAATGGTCCGAAATTCGTCTCAAAATCATAATTTTAAAGTCCGAATTTGTATGAAAATACCGGAAAATCATTTTTAGACTAGAAATAAGCATTCTCCTCGAAATATATAAGGCAAATTGTTGTCTATTTTTTAGTCTAGAATTGTTCTTTTTTCCCCGATCTTGTCTCAAAATTTCCATTGTTCCAGATTCGCCGACAAATTTCGCCCACACATATGGCCATCGGTGAAATGGACCGCTTTGGCATTCTTCAAGAGAGCCTTCTTGGTGTGGGTTCCATCCGATACGTCCATCAGAGTGAGTTTTTTCGTGTGTTTTGTGGGTCAGAAATGGCCTAACATGACCCTGGTACATTTTCTAGGTCATTCTAACGTGGTCCCTAGTTTTTGCATGTTGAGTTTTCTAGGGGACATGAAAGTTAGTGGCCTAGGAAACTCAACATGCTAAATTTAGGGCACCACGTTGAAATGACCTAGAAAACAAACCAGGGGAATATCATGCCATTTTCAAGCCATAAAAGGTTATGGCCTAGAAAACTCATTTTCCAAAAATTAGGCCGCAATAGTCAATGGCCTAGAAAACCTAAAAACTGTAAATTCGAAATTTGCAGATGGTAATGATGGGCTGCTTCTATCTCGCCATGAAGATCGACGAGTTTTATATCACTATTGATGATTTTGTCAAGAACATGAAGTGAGTTTTTCAATCAAATGCGGGCCGAATCATTGCTTTTTCCAGGGCAAACGCCCCTTTTTTATGAGCAAGATACAGAATTTCAAATAATTTCTAGCTTCGAAATACTGATTTTTCGTGGTCAAATCCTGATTTTCGACCTCCCAACTGAGAAAAATCATATAAAAAATGATCATCATCAATTTCTAGTGTGGGCGACCCTCGTCAAAATGCCGAACGAATTCTGAA</canonical>
            <polymorphic>GATGCAGAGATCCATTGAGGATGCGGCGTTAAAGTAAGGAAAAAGCATCATCGAAATTTGCTAAACTAAAATTTCGTAGAAAATGGTCCGAAATTCGTCTCAAAATCATAATTTTAAAGTCCGAATTTGTATGAAAATACCGGAAAATCATTTTTAGACTAGAAATAAGCATTCTCCTCGAAATATATAAGGCAAATTGTTGTCTATTTTTTAGTCTAGAATTGTTCTTTTTTCCCCGATCTTGTCTCAAAATTTCCATTGTTCCAGATTCGCCGACAAATTTCGCCCACACATATGGCCATCGGTGAAATGGACCGCTTTGGCATTCTTCAAGAGAGCCTTCTTGGTGTGGGTTCCATCCGATACGTCCATCAGAGTGAGTTTTTTCGTGTGTTTTGTGGGTCAGAAATGGCCTAACATGACCCTGGTACATTTTCTAGGTCATTCTAACGTGGTCCCTAGTTTTTGCATGTTGAGTTTTCTAGGGGACATGAAAGTTRGTGGCCTAGGAAACTCAACATGCTAAATTTAGGGCACCACGTTGAAATGACCTAGAAAACAAACCAGGGGAATATCATGCCATTTTCAAGCCATAAAAGGTTATGGCCTAGAAAACTCATTTTCCAAAAATTAGGCCGCAATAGTCAATGGCCTAGAAAACCTAAAAACTGTAAATTCGAAATTTGCAGATGGTAATGATGGGCTGCTTCTATCTCGCCATGAAGATCGACGAGTTTTATATCACTATTGATGATTTTGTCAAGAACATGAAGTGAGTTTTTCAATCAAATGCGGGCCGAATCATTGCTTTTTCCAGGGCAAACGCCCCTTTTTTATGAGCAAGATACAGAATTTCAAATAATTTCTAGCTTCGAAATACTGATTTTTCGTGGTCAAATCCTGATTTTCGACCTCCCAACTGAGAAAAATCATATAAAAAATGATCATCATCAATTTCTAGTGTGGGCGACCCTCGTCAAAATGCCGAACGAATTCTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTCCATTGTTCCAGATTC</pcr_primer_p1>
		<pcr_primer_p2>TGATATAAAACTCGTCGATCTTC</pcr_primer_p2>
		<pcr_amplicon_size>494</pcr_amplicon_size>
		<canonical_amplicon>AATTTCCATTGTTCCAGATTCGCCGACAAATTTCGCCCACACATATGGCCATCGGTGAAATGGACCGCTTTGGCATTCTTCAAGAGAGCCTTCTTGGTGTGGGTTCCATCCGATACGTCCATCAGAGTGAGTTTTTTCGTGTGTTTTGTGGGTCAGAAATGGCCTAACATGACCCTGGTACATTTTCTAGGTCATTCTAACGTGGTCCCTAGTTTTTGCATGTTGAGTTTTCTAGGGGACATGAAAGTTAGTGGCCTAGGAAACTCAACATGCTAAATTTAGGGCACCACGTTGAAATGACCTAGAAAACAAACCAGGGGAATATCATGCCATTTTCAAGCCATAAAAGGTTATGGCCTAGAAAACTCATTTTCCAAAAATTAGGCCGCAATAGTCAATGGCCTAGAAAACCTAAAAACTGTAAATTCGAAATTTGCAGATGGTAATGATGGGCTGCTTCTATCTCGCCATGAAGATCGACGAGTTTTATATCA</canonical_amplicon>
		<polymorphic_amplicon>AATTTCCATTGTTCCAGATTCGCCGACAAATTTCGCCCACACATATGGCCATCGGTGAAATGGACCGCTTTGGCATTCTTCAAGAGAGCCTTCTTGGTGTGGGTTCCATCCGATACGTCCATCAGAGTGAGTTTTTTCGTGTGTTTTGTGGGTCAGAAATGGCCTAACATGACCCTGGTACATTTTCTAGGTCATTCTAACGTGGTCCCTAGTTTTTGCATGTTGAGTTTTCTAGGGGACATGAAAGTTRGTGGCCTAGGAAACTCAACATGCTAAATTTAGGGCACCACGTTGAAATGACCTAGAAAACAAACCAGGGGAATATCATGCCATTTTCAAGCCATAAAAGGTTATGGCCTAGAAAACTCATTTTCCAAAAATTAGGCCGCAATAGTCAATGGCCTAGAAAACCTAAAAACTGTAAATTCGAAATTTGCAGATGGTAATGATGGGCTGCTTCTATCTCGCCATGAAGATCGACGAGTTTTATATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36923</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>29572</contig_pos>
        <strand></strand>
        <context>aaactcaaca[T/C]gctaaattta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGTTGAGTTTTCTAGGGGACATGAAAGTTAGTGGCCTAGGAAACTCAACA</left_flank>
        <right_flank>GCTAAATTTAGGGCACCACGTTGAAATGACCTAGAAAACAAACCAGGGGA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCGGCGTTAAAGTAAGGAAAAAGCATCATCGAAATTTGCTAAACTAAAATTTCGTAGAAAATGGTCCGAAATTCGTCTCAAAATCATAATTTTAAAGTCCGAATTTGTATGAAAATACCGGAAAATCATTTTTAGACTAGAAATAAGCATTCTCCTCGAAATATATAAGGCAAATTGTTGTCTATTTTTTAGTCTAGAATTGTTCTTTTTTCCCCGATCTTGTCTCAAAATTTCCATTGTTCCAGATTCGCCGACAAATTTCGCCCACACATATGGCCATCGGTGAAATGGACCGCTTTGGCATTCTTCAAGAGAGCCTTCTTGGTGTGGGTTCCATCCGATACGTCCATCAGAGTGAGTTTTTTCGTGTGTTTTGTGGGTCAGAAATGGCCTAACATGACCCTGGTACATTTTCTAGGTCATTCTAACGTGGTCCCTAGTTTTTGCATGTTGAGTTTTCTAGGGGACATGAAAGTTAGTGGCCTAGGAAACTCAACATGCTAAATTTAGGGCACCACGTTGAAATGACCTAGAAAACAAACCAGGGGAATATCATGCCATTTTCAAGCCATAAAAGGTTATGGCCTAGAAAACTCATTTTCCAAAAATTAGGCCGCAATAGTCAATGGCCTAGAAAACCTAAAAACTGTAAATTCGAAATTTGCAGATGGTAATGATGGGCTGCTTCTATCTCGCCATGAAGATCGACGAGTTTTATATCACTATTGATGATTTTGTCAAGAACATGAAGTGAGTTTTTCAATCAAATGCGGGCCGAATCATTGCTTTTTCCAGGGCAAACGCCCCTTTTTTATGAGCAAGATACAGAATTTCAAATAATTTCTAGCTTCGAAATACTGATTTTTCGTGGTCAAATCCTGATTTTCGACCTCCCAACTGAGAAAAATCATATAAAAAATGATCATCATCAATTTCTAGTGTGGGCGACCCTCGTCAAAATGCCGAACGAATTCTGAAGCTGGAGCCGGAATTGATGAA</canonical>
            <polymorphic>TGCGGCGTTAAAGTAAGGAAAAAGCATCATCGAAATTTGCTAAACTAAAATTTCGTAGAAAATGGTCCGAAATTCGTCTCAAAATCATAATTTTAAAGTCCGAATTTGTATGAAAATACCGGAAAATCATTTTTAGACTAGAAATAAGCATTCTCCTCGAAATATATAAGGCAAATTGTTGTCTATTTTTTAGTCTAGAATTGTTCTTTTTTCCCCGATCTTGTCTCAAAATTTCCATTGTTCCAGATTCGCCGACAAATTTCGCCCACACATATGGCCATCGGTGAAATGGACCGCTTTGGCATTCTTCAAGAGAGCCTTCTTGGTGTGGGTTCCATCCGATACGTCCATCAGAGTGAGTTTTTTCGTGTGTTTTGTGGGTCAGAAATGGCCTAACATGACCCTGGTACATTTTCTAGGTCATTCTAACGTGGTCCCTAGTTTTTGCATGTTGAGTTTTCTAGGGGACATGAAAGTTAGTGGCCTAGGAAACTCAACAYGCTAAATTTAGGGCACCACGTTGAAATGACCTAGAAAACAAACCAGGGGAATATCATGCCATTTTCAAGCCATAAAAGGTTATGGCCTAGAAAACTCATTTTCCAAAAATTAGGCCGCAATAGTCAATGGCCTAGAAAACCTAAAAACTGTAAATTCGAAATTTGCAGATGGTAATGATGGGCTGCTTCTATCTCGCCATGAAGATCGACGAGTTTTATATCACTATTGATGATTTTGTCAAGAACATGAAGTGAGTTTTTCAATCAAATGCGGGCCGAATCATTGCTTTTTCCAGGGCAAACGCCCCTTTTTTATGAGCAAGATACAGAATTTCAAATAATTTCTAGCTTCGAAATACTGATTTTTCGTGGTCAAATCCTGATTTTCGACCTCCCAACTGAGAAAAATCATATAAAAAATGATCATCATCAATTTCTAGTGTGGGCGACCCTCGTCAAAATGCCGAACGAATTCTGAAGCTGGAGCCGGAATTGATGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>499 451 50</canonical_bands>
                <polymorphic_bands>549 451</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>397 254 143 57 51 48 29 21</canonical_bands>
                <polymorphic_bands>397 254 143 86 51 48 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTCCATTGTTCCAGATTC</pcr_primer_p1>
		<pcr_primer_p2>TGATATAAAACTCGTCGATCTTC</pcr_primer_p2>
		<pcr_amplicon_size>494</pcr_amplicon_size>
		<canonical_amplicon>AATTTCCATTGTTCCAGATTCGCCGACAAATTTCGCCCACACATATGGCCATCGGTGAAATGGACCGCTTTGGCATTCTTCAAGAGAGCCTTCTTGGTGTGGGTTCCATCCGATACGTCCATCAGAGTGAGTTTTTTCGTGTGTTTTGTGGGTCAGAAATGGCCTAACATGACCCTGGTACATTTTCTAGGTCATTCTAACGTGGTCCCTAGTTTTTGCATGTTGAGTTTTCTAGGGGACATGAAAGTTAGTGGCCTAGGAAACTCAACATGCTAAATTTAGGGCACCACGTTGAAATGACCTAGAAAACAAACCAGGGGAATATCATGCCATTTTCAAGCCATAAAAGGTTATGGCCTAGAAAACTCATTTTCCAAAAATTAGGCCGCAATAGTCAATGGCCTAGAAAACCTAAAAACTGTAAATTCGAAATTTGCAGATGGTAATGATGGGCTGCTTCTATCTCGCCATGAAGATCGACGAGTTTTATATCA</canonical_amplicon>
		<polymorphic_amplicon>AATTTCCATTGTTCCAGATTCGCCGACAAATTTCGCCCACACATATGGCCATCGGTGAAATGGACCGCTTTGGCATTCTTCAAGAGAGCCTTCTTGGTGTGGGTTCCATCCGATACGTCCATCAGAGTGAGTTTTTTCGTGTGTTTTGTGGGTCAGAAATGGCCTAACATGACCCTGGTACATTTTCTAGGTCATTCTAACGTGGTCCCTAGTTTTTGCATGTTGAGTTTTCTAGGGGACATGAAAGTTAGTGGCCTAGGAAACTCAACAYGCTAAATTTAGGGCACCACGTTGAAATGACCTAGAAAACAAACCAGGGGAATATCATGCCATTTTCAAGCCATAAAAGGTTATGGCCTAGAAAACTCATTTTCCAAAAATTAGGCCGCAATAGTCAATGGCCTAGAAAACCTAAAAACTGTAAATTCGAAATTTGCAGATGGTAATGATGGGCTGCTTCTATCTCGCCATGAAGATCGACGAGTTTTATATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36924</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>29707</contig_pos>
        <strand>+</strand>
        <context>caatggccta[A/G]aaaacctaAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCTAGAAAACTCATTTTCCAAAAATTAGGCCGCAATAGTCAATGGCCTA</left_flank>
        <right_flank>AAAACCTAAAAACTGTAAATTCGAAATTTGCAGATGGTAATGATGGGCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACTAGAAATAAGCATTCTCCTCGAAATATATAAGGCAAATTGTTGTCTATTTTTTAGTCTAGAATTGTTCTTTTTTCCCCGATCTTGTCTCAAAATTTCCATTGTTCCAGATTCGCCGACAAATTTCGCCCACACATATGGCCATCGGTGAAATGGACCGCTTTGGCATTCTTCAAGAGAGCCTTCTTGGTGTGGGTTCCATCCGATACGTCCATCAGAGTGAGTTTTTTCGTGTGTTTTGTGGGTCAGAAATGGCCTAACATGACCCTGGTACATTTTCTAGGTCATTCTAACGTGGTCCCTAGTTTTTGCATGTTGAGTTTTCTAGGGGACATGAAAGTTAGTGGCCTAGGAAACTCAACATGCTAAATTTAGGGCACCACGTTGAAATGACCTAGAAAACAAACCAGGGGAATATCATGCCATTTTCAAGCCATAAAAGGTTATGGCCTAGAAAACTCATTTTCCAAAAATTAGGCCGCAATAGTCAATGGCCTAGAAAACCTAAAAACTGTAAATTCGAAATTTGCAGATGGTAATGATGGGCTGCTTCTATCTCGCCATGAAGATCGACGAGTTTTATATCACTATTGATGATTTTGTCAAGAACATGAAGTGAGTTTTTCAATCAAATGCGGGCCGAATCATTGCTTTTTCCAGGGCAAACGCCCCTTTTTTATGAGCAAGATACAGAATTTCAAATAATTTCTAGCTTCGAAATACTGATTTTTCGTGGTCAAATCCTGATTTTCGACCTCCCAACTGAGAAAAATCATATAAAAAATGATCATCATCAATTTCTAGTGTGGGCGACCCTCGTCAAAATGCCGAACGAATTCTGAAGCTGGAGCCGGAATTGATGAAAGTTCTGAATTACAACCTTACCGTACACTGCCCATATCGTCCGTTCGAAGGTCATCTGATGGATATGAAGACTCGAATGCTTCTGCTGAATTTCGACCTCGAATCAATTCGTAGGGACTCGATGAGGTTCTTCCA</canonical>
            <polymorphic>GACTAGAAATAAGCATTCTCCTCGAAATATATAAGGCAAATTGTTGTCTATTTTTTAGTCTAGAATTGTTCTTTTTTCCCCGATCTTGTCTCAAAATTTCCATTGTTCCAGATTCGCCGACAAATTTCGCCCACACATATGGCCATCGGTGAAATGGACCGCTTTGGCATTCTTCAAGAGAGCCTTCTTGGTGTGGGTTCCATCCGATACGTCCATCAGAGTGAGTTTTTTCGTGTGTTTTGTGGGTCAGAAATGGCCTAACATGACCCTGGTACATTTTCTAGGTCATTCTAACGTGGTCCCTAGTTTTTGCATGTTGAGTTTTCTAGGGGACATGAAAGTTAGTGGCCTAGGAAACTCAACATGCTAAATTTAGGGCACCACGTTGAAATGACCTAGAAAACAAACCAGGGGAATATCATGCCATTTTCAAGCCATAAAAGGTTATGGCCTAGAAAACTCATTTTCCAAAAATTAGGCCGCAATAGTCAATGGCCTARAAAACCTAAAAACTGTAAATTCGAAATTTGCAGATGGTAATGATGGGCTGCTTCTATCTCGCCATGAAGATCGACGAGTTTTATATCACTATTGATGATTTTGTCAAGAACATGAAGTGAGTTTTTCAATCAAATGCGGGCCGAATCATTGCTTTTTCCAGGGCAAACGCCCCTTTTTTATGAGCAAGATACAGAATTTCAAATAATTTCTAGCTTCGAAATACTGATTTTTCGTGGTCAAATCCTGATTTTCGACCTCCCAACTGAGAAAAATCATATAAAAAATGATCATCATCAATTTCTAGTGTGGGCGACCCTCGTCAAAATGCCGAACGAATTCTGAAGCTGGAGCCGGAATTGATGAAAGTTCTGAATTACAACCTTACCGTACACTGCCCATATCGTCCGTTCGAAGGTCATCTGATGGATATGAAGACTCGAATGCTTCTGCTGAATTTCGACCTCGAATCAATTCGTAGGGACTCGATGAGGTTCTTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>221 213 198 92 57 56 46 45 24 23 22 3</canonical_bands>
                <polymorphic_bands>258 221 198 92 57 56 46 24 23 22 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTCCATTGTTCCAGATTC</pcr_primer_p1>
		<pcr_primer_p2>TGATATAAAACTCGTCGATCTTC</pcr_primer_p2>
		<pcr_amplicon_size>494</pcr_amplicon_size>
		<canonical_amplicon>AATTTCCATTGTTCCAGATTCGCCGACAAATTTCGCCCACACATATGGCCATCGGTGAAATGGACCGCTTTGGCATTCTTCAAGAGAGCCTTCTTGGTGTGGGTTCCATCCGATACGTCCATCAGAGTGAGTTTTTTCGTGTGTTTTGTGGGTCAGAAATGGCCTAACATGACCCTGGTACATTTTCTAGGTCATTCTAACGTGGTCCCTAGTTTTTGCATGTTGAGTTTTCTAGGGGACATGAAAGTTAGTGGCCTAGGAAACTCAACATGCTAAATTTAGGGCACCACGTTGAAATGACCTAGAAAACAAACCAGGGGAATATCATGCCATTTTCAAGCCATAAAAGGTTATGGCCTAGAAAACTCATTTTCCAAAAATTAGGCCGCAATAGTCAATGGCCTAGAAAACCTAAAAACTGTAAATTCGAAATTTGCAGATGGTAATGATGGGCTGCTTCTATCTCGCCATGAAGATCGACGAGTTTTATATCA</canonical_amplicon>
		<polymorphic_amplicon>AATTTCCATTGTTCCAGATTCGCCGACAAATTTCGCCCACACATATGGCCATCGGTGAAATGGACCGCTTTGGCATTCTTCAAGAGAGCCTTCTTGGTGTGGGTTCCATCCGATACGTCCATCAGAGTGAGTTTTTTCGTGTGTTTTGTGGGTCAGAAATGGCCTAACATGACCCTGGTACATTTTCTAGGTCATTCTAACGTGGTCCCTAGTTTTTGCATGTTGAGTTTTCTAGGGGACATGAAAGTTAGTGGCCTAGGAAACTCAACATGCTAAATTTAGGGCACCACGTTGAAATGACCTAGAAAACAAACCAGGGGAATATCATGCCATTTTCAAGCCATAAAAGGTTATGGCCTAGAAAACTCATTTTCCAAAAATTAGGCCGCAATAGTCAATGGCCTARAAAACCTAAAAACTGTAAATTCGAAATTTGCAGATGGTAATGATGGGCTGCTTCTATCTCGCCATGAAGATCGACGAGTTTTATATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36925</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>29746</contig_pos>
        <strand></strand>
        <context>TGCAGATGGT[A/G]ATGATGGGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAATGGCCTAGAAAACCTAAAAACTGTAAATTCGAAATTTGCAGATGGT</left_flank>
        <right_flank>ATGATGGGCTGCTTCTATCTCGCCATGAAGATCGACGAGTTTTATATCAC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGTTGTCTATTTTTTAGTCTAGAATTGTTCTTTTTTCCCCGATCTTGTCTCAAAATTTCCATTGTTCCAGATTCGCCGACAAATTTCGCCCACACATATGGCCATCGGTGAAATGGACCGCTTTGGCATTCTTCAAGAGAGCCTTCTTGGTGTGGGTTCCATCCGATACGTCCATCAGAGTGAGTTTTTTCGTGTGTTTTGTGGGTCAGAAATGGCCTAACATGACCCTGGTACATTTTCTAGGTCATTCTAACGTGGTCCCTAGTTTTTGCATGTTGAGTTTTCTAGGGGACATGAAAGTTAGTGGCCTAGGAAACTCAACATGCTAAATTTAGGGCACCACGTTGAAATGACCTAGAAAACAAACCAGGGGAATATCATGCCATTTTCAAGCCATAAAAGGTTATGGCCTAGAAAACTCATTTTCCAAAAATTAGGCCGCAATAGTCAATGGCCTAGAAAACCTAAAAACTGTAAATTCGAAATTTGCAGATGGTAATGATGGGCTGCTTCTATCTCGCCATGAAGATCGACGAGTTTTATATCACTATTGATGATTTTGTCAAGAACATGAAGTGAGTTTTTCAATCAAATGCGGGCCGAATCATTGCTTTTTCCAGGGCAAACGCCCCTTTTTTATGAGCAAGATACAGAATTTCAAATAATTTCTAGCTTCGAAATACTGATTTTTCGTGGTCAAATCCTGATTTTCGACCTCCCAACTGAGAAAAATCATATAAAAAATGATCATCATCAATTTCTAGTGTGGGCGACCCTCGTCAAAATGCCGAACGAATTCTGAAGCTGGAGCCGGAATTGATGAAAGTTCTGAATTACAACCTTACCGTACACTGCCCATATCGTCCGTTCGAAGGTCATCTGATGGATATGAAGACTCGAATGCTTCTGCTGAATTTCGACCTCGAATCAATTCGTAGGGACTCGATGAGGTTCTTCCAGAATGCCCTGCAAACGGACGTTCTTCTTGTCTACCCACC</canonical>
            <polymorphic>ATTGTTGTCTATTTTTTAGTCTAGAATTGTTCTTTTTTCCCCGATCTTGTCTCAAAATTTCCATTGTTCCAGATTCGCCGACAAATTTCGCCCACACATATGGCCATCGGTGAAATGGACCGCTTTGGCATTCTTCAAGAGAGCCTTCTTGGTGTGGGTTCCATCCGATACGTCCATCAGAGTGAGTTTTTTCGTGTGTTTTGTGGGTCAGAAATGGCCTAACATGACCCTGGTACATTTTCTAGGTCATTCTAACGTGGTCCCTAGTTTTTGCATGTTGAGTTTTCTAGGGGACATGAAAGTTAGTGGCCTAGGAAACTCAACATGCTAAATTTAGGGCACCACGTTGAAATGACCTAGAAAACAAACCAGGGGAATATCATGCCATTTTCAAGCCATAAAAGGTTATGGCCTAGAAAACTCATTTTCCAAAAATTAGGCCGCAATAGTCAATGGCCTAGAAAACCTAAAAACTGTAAATTCGAAATTTGCAGATGGTRATGATGGGCTGCTTCTATCTCGCCATGAAGATCGACGAGTTTTATATCACTATTGATGATTTTGTCAAGAACATGAAGTGAGTTTTTCAATCAAATGCGGGCCGAATCATTGCTTTTTCCAGGGCAAACGCCCCTTTTTTATGAGCAAGATACAGAATTTCAAATAATTTCTAGCTTCGAAATACTGATTTTTCGTGGTCAAATCCTGATTTTCGACCTCCCAACTGAGAAAAATCATATAAAAAATGATCATCATCAATTTCTAGTGTGGGCGACCCTCGTCAAAATGCCGAACGAATTCTGAAGCTGGAGCCGGAATTGATGAAAGTTCTGAATTACAACCTTACCGTACACTGCCCATATCGTCCGTTCGAAGGTCATCTGATGGATATGAAGACTCGAATGCTTCTGCTGAATTTCGACCTCGAATCAATTCGTAGGGACTCGATGAGGTTCTTCCAGAATGCCCTGCAAACGGACGTTCTTCTTGTCTACCCACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTCCATTGTTCCAGATTC</pcr_primer_p1>
		<pcr_primer_p2>GTTCTTGACAAAATCATCAATAGT</pcr_primer_p2>
		<pcr_amplicon_size>517</pcr_amplicon_size>
		<canonical_amplicon>AATTTCCATTGTTCCAGATTCGCCGACAAATTTCGCCCACACATATGGCCATCGGTGAAATGGACCGCTTTGGCATTCTTCAAGAGAGCCTTCTTGGTGTGGGTTCCATCCGATACGTCCATCAGAGTGAGTTTTTTCGTGTGTTTTGTGGGTCAGAAATGGCCTAACATGACCCTGGTACATTTTCTAGGTCATTCTAACGTGGTCCCTAGTTTTTGCATGTTGAGTTTTCTAGGGGACATGAAAGTTAGTGGCCTAGGAAACTCAACATGCTAAATTTAGGGCACCACGTTGAAATGACCTAGAAAACAAACCAGGGGAATATCATGCCATTTTCAAGCCATAAAAGGTTATGGCCTAGAAAACTCATTTTCCAAAAATTAGGCCGCAATAGTCAATGGCCTAGAAAACCTAAAAACTGTAAATTCGAAATTTGCAGATGGTAATGATGGGCTGCTTCTATCTCGCCATGAAGATCGACGAGTTTTATATCACTATTGATGATTTTGTCAAGAAC</canonical_amplicon>
		<polymorphic_amplicon>AATTTCCATTGTTCCAGATTCGCCGACAAATTTCGCCCACACATATGGCCATCGGTGAAATGGACCGCTTTGGCATTCTTCAAGAGAGCCTTCTTGGTGTGGGTTCCATCCGATACGTCCATCAGAGTGAGTTTTTTCGTGTGTTTTGTGGGTCAGAAATGGCCTAACATGACCCTGGTACATTTTCTAGGTCATTCTAACGTGGTCCCTAGTTTTTGCATGTTGAGTTTTCTAGGGGACATGAAAGTTAGTGGCCTAGGAAACTCAACATGCTAAATTTAGGGCACCACGTTGAAATGACCTAGAAAACAAACCAGGGGAATATCATGCCATTTTCAAGCCATAAAAGGTTATGGCCTAGAAAACTCATTTTCCAAAAATTAGGCCGCAATAGTCAATGGCCTAGAAAACCTAAAAACTGTAAATTCGAAATTTGCAGATGGTRATGATGGGCTGCTTCTATCTCGCCATGAAGATCGACGAGTTTTATATCACTATTGATGATTTTGTCAAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36926</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>29838</contig_pos>
        <strand>+</strand>
        <context>GTTTTTCAAT[C/T]AAATGCGGGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATATCACTATTGATGATTTTGTCAAGAACATGAAGTGAGTTTTTCAAT</left_flank>
        <right_flank>AAATGCGGGCCGAATCATTGCTTTTTCCAGGGCAAACGCCCCTTTTTTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACACATATGGCCATCGGTGAAATGGACCGCTTTGGCATTCTTCAAGAGAGCCTTCTTGGTGTGGGTTCCATCCGATACGTCCATCAGAGTGAGTTTTTTCGTGTGTTTTGTGGGTCAGAAATGGCCTAACATGACCCTGGTACATTTTCTAGGTCATTCTAACGTGGTCCCTAGTTTTTGCATGTTGAGTTTTCTAGGGGACATGAAAGTTAGTGGCCTAGGAAACTCAACATGCTAAATTTAGGGCACCACGTTGAAATGACCTAGAAAACAAACCAGGGGAATATCATGCCATTTTCAAGCCATAAAAGGTTATGGCCTAGAAAACTCATTTTCCAAAAATTAGGCCGCAATAGTCAATGGCCTAGAAAACCTAAAAACTGTAAATTCGAAATTTGCAGATGGTAATGATGGGCTGCTTCTATCTCGCCATGAAGATCGACGAGTTTTATATCACTATTGATGATTTTGTCAAGAACATGAAGTGAGTTTTTCAATCAAATGCGGGCCGAATCATTGCTTTTTCCAGGGCAAACGCCCCTTTTTTATGAGCAAGATACAGAATTTCAAATAATTTCTAGCTTCGAAATACTGATTTTTCGTGGTCAAATCCTGATTTTCGACCTCCCAACTGAGAAAAATCATATAAAAAATGATCATCATCAATTTCTAGTGTGGGCGACCCTCGTCAAAATGCCGAACGAATTCTGAAGCTGGAGCCGGAATTGATGAAAGTTCTGAATTACAACCTTACCGTACACTGCCCATATCGTCCGTTCGAAGGTCATCTGATGGATATGAAGACTCGAATGCTTCTGCTGAATTTCGACCTCGAATCAATTCGTAGGGACTCGATGAGGTTCTTCCAGAATGCCCTGCAAACGGACGTTCTTCTTGTCTACCCACCATCTCAGATTGCATTGGCTGCTATCAATTTTGGCTGCATGCTCAAGGTAAATGGGCGGGAAGTTTGAATTTCAAAAATTCAAAAAGTTCCAG</canonical>
            <polymorphic>CACACATATGGCCATCGGTGAAATGGACCGCTTTGGCATTCTTCAAGAGAGCCTTCTTGGTGTGGGTTCCATCCGATACGTCCATCAGAGTGAGTTTTTTCGTGTGTTTTGTGGGTCAGAAATGGCCTAACATGACCCTGGTACATTTTCTAGGTCATTCTAACGTGGTCCCTAGTTTTTGCATGTTGAGTTTTCTAGGGGACATGAAAGTTAGTGGCCTAGGAAACTCAACATGCTAAATTTAGGGCACCACGTTGAAATGACCTAGAAAACAAACCAGGGGAATATCATGCCATTTTCAAGCCATAAAAGGTTATGGCCTAGAAAACTCATTTTCCAAAAATTAGGCCGCAATAGTCAATGGCCTAGAAAACCTAAAAACTGTAAATTCGAAATTTGCAGATGGTAATGATGGGCTGCTTCTATCTCGCCATGAAGATCGACGAGTTTTATATCACTATTGATGATTTTGTCAAGAACATGAAGTGAGTTTTTCAATYAAATGCGGGCCGAATCATTGCTTTTTCCAGGGCAAACGCCCCTTTTTTATGAGCAAGATACAGAATTTCAAATAATTTCTAGCTTCGAAATACTGATTTTTCGTGGTCAAATCCTGATTTTCGACCTCCCAACTGAGAAAAATCATATAAAAAATGATCATCATCAATTTCTAGTGTGGGCGACCCTCGTCAAAATGCCGAACGAATTCTGAAGCTGGAGCCGGAATTGATGAAAGTTCTGAATTACAACCTTACCGTACACTGCCCATATCGTCCGTTCGAAGGTCATCTGATGGATATGAAGACTCGAATGCTTCTGCTGAATTTCGACCTCGAATCAATTCGTAGGGACTCGATGAGGTTCTTCCAGAATGCCCTGCAAACGGACGTTCTTCTTGTCTACCCACCATCTCAGATTGCATTGGCTGCTATCAATTTTGGCTGCATGCTCAAGGTAAATGGGCGGGAAGTTTGAATTTCAAAAATTCAAAAAGTTCCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGATCGACGAGTTTTATATC</pcr_primer_p1>
		<pcr_primer_p2>CCACACTAGAAATTGATGATGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TGAAGATCGACGAGTTTTATATCACTATTGATGATTTTGTCAAGAACATGAAGTGAGTTTTTCAATCAAATGCGGGCCGAATCATTGCTTTTTCCAGGGCAAACGCCCCTTTTTTATGAGCAAGATACAGAATTTCAAATAATTTCTAGCTTCGAAATACTGATTTTTCGTGGTCAAATCCTGATTTTCGACCTCCCAACTGAGAAAAATCATATAAAAAATGATCATCATCAATTTCTAGTGTGG</canonical_amplicon>
		<polymorphic_amplicon>TGAAGATCGACGAGTTTTATATCACTATTGATGATTTTGTCAAGAACATGAAGTGAGTTTTTCAATYAAATGCGGGCCGAATCATTGCTTTTTCCAGGGCAAACGCCCCTTTTTTATGAGCAAGATACAGAATTTCAAATAATTTCTAGCTTCGAAATACTGATTTTTCGTGGTCAAATCCTGATTTTCGACCTCCCAACTGAGAAAAATCATATAAAAAATGATCATCATCAATTTCTAGTGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36927</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>29900</contig_pos>
        <strand></strand>
        <context>AGCAAGATAC[A/C]GAATMTCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAATCATTGCTTTTTCCAGGGCAAACGCCCCTTTTTTATGAGCAAGATAC</left_flank>
        <right_flank>GAATTTCAAATAATTTCTAGCTTCGAAATACTGATTTTTCGTGGTCAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGTTCCATCCGATACGTCCATCAGAGTGAGTTTTTTCGTGTGTTTTGTGGGTCAGAAATGGCCTAACATGACCCTGGTACATTTTCTAGGTCATTCTAACGTGGTCCCTAGTTTTTGCATGTTGAGTTTTCTAGGGGACATGAAAGTTAGTGGCCTAGGAAACTCAACATGCTAAATTTAGGGCACCACGTTGAAATGACCTAGAAAACAAACCAGGGGAATATCATGCCATTTTCAAGCCATAAAAGGTTATGGCCTAGAAAACTCATTTTCCAAAAATTAGGCCGCAATAGTCAATGGCCTAGAAAACCTAAAAACTGTAAATTCGAAATTTGCAGATGGTAATGATGGGCTGCTTCTATCTCGCCATGAAGATCGACGAGTTTTATATCACTATTGATGATTTTGTCAAGAACATGAAGTGAGTTTTTCAATCAAATGCGGGCCGAATCATTGCTTTTTCCAGGGCAAACGCCCCTTTTTTATGAGCAAGATACAGAATTTCAAATAATTTCTAGCTTCGAAATACTGATTTTTCGTGGTCAAATCCTGATTTTCGACCTCCCAACTGAGAAAAATCATATAAAAAATGATCATCATCAATTTCTAGTGTGGGCGACCCTCGTCAAAATGCCGAACGAATTCTGAAGCTGGAGCCGGAATTGATGAAAGTTCTGAATTACAACCTTACCGTACACTGCCCATATCGTCCGTTCGAAGGTCATCTGATGGATATGAAGACTCGAATGCTTCTGCTGAATTTCGACCTCGAATCAATTCGTAGGGACTCGATGAGGTTCTTCCAGAATGCCCTGCAAACGGACGTTCTTCTTGTCTACCCACCATCTCAGATTGCATTGGCTGCTATCAATTTTGGCTGCATGCTCAAGGTAAATGGGCGGGAAGTTTGAATTTCAAAAATTCAAAAAGTTCCAGGAAAGTCGGATGAGATTCTCAGAGAGTTTCTGAGAAAAATGATTGGGATCGAGGAGGATTCG</canonical>
            <polymorphic>TGGGTTCCATCCGATACGTCCATCAGAGTGAGTTTTTTCGTGTGTTTTGTGGGTCAGAAATGGCCTAACATGACCCTGGTACATTTTCTAGGTCATTCTAACGTGGTCCCTAGTTTTTGCATGTTGAGTTTTCTAGGGGACATGAAAGTTAGTGGCCTAGGAAACTCAACATGCTAAATTTAGGGCACCACGTTGAAATGACCTAGAAAACAAACCAGGGGAATATCATGCCATTTTCAAGCCATAAAAGGTTATGGCCTAGAAAACTCATTTTCCAAAAATTAGGCCGCAATAGTCAATGGCCTAGAAAACCTAAAAACTGTAAATTCGAAATTTGCAGATGGTAATGATGGGCTGCTTCTATCTCGCCATGAAGATCGACGAGTTTTATATCACTATTGATGATTTTGTCAAGAACATGAAGTGAGTTTTTCAATCAAATGCGGGCCGAATCATTGCTTTTTCCAGGGCAAACGCCCCTTTTTTATGAGCAAGATACMGAATTTCAAATAATTTCTAGCTTCGAAATACTGATTTTTCGTGGTCAAATCCTGATTTTCGACCTCCCAACTGAGAAAAATCATATAAAAAATGATCATCATCAATTTCTAGTGTGGGCGACCCTCGTCAAAATGCCGAACGAATTCTGAAGCTGGAGCCGGAATTGATGAAAGTTCTGAATTACAACCTTACCGTACACTGCCCATATCGTCCGTTCGAAGGTCATCTGATGGATATGAAGACTCGAATGCTTCTGCTGAATTTCGACCTCGAATCAATTCGTAGGGACTCGATGAGGTTCTTCCAGAATGCCCTGCAAACGGACGTTCTTCTTGTCTACCCACCATCTCAGATTGCATTGGCTGCTATCAATTTTGGCTGCATGCTCAAGGTAAATGGGCGGGAAGTTTGAATTTCAAAAATTCAAAAAGTTCCAGGAAAGTCGGATGAGATTCTCAGAGAGTTTCTGAGAAAAATGATTGGGATCGAGGAGGATTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGATCGACGAGTTTTATATC</pcr_primer_p1>
		<pcr_primer_p2>CCACACTAGAAATTGATGATGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TGAAGATCGACGAGTTTTATATCACTATTGATGATTTTGTCAAGAACATGAAGTGAGTTTTTCAATCAAATGCGGGCCGAATCATTGCTTTTTCCAGGGCAAACGCCCCTTTTTTATGAGCAAGATACAGAATTTCAAATAATTTCTAGCTTCGAAATACTGATTTTTCGTGGTCAAATCCTGATTTTCGACCTCCCAACTGAGAAAAATCATATAAAAAATGATCATCATCAATTTCTAGTGTGG</canonical_amplicon>
		<polymorphic_amplicon>TGAAGATCGACGAGTTTTATATCACTATTGATGATTTTGTCAAGAACATGAAGTGAGTTTTTCAATCAAATGCGGGCCGAATCATTGCTTTTTCCAGGGCAAACGCCCCTTTTTTATGAGCAAGATACMGAATTTCAAATAATTTCTAGCTTCGAAATACTGATTTTTCGTGGTCAAATCCTGATTTTCGACCTCCCAACTGAGAAAAATCATATAAAAAATGATCATCATCAATTTCTAGTGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36928</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>29905</contig_pos>
        <strand>+</strand>
        <context>GATACMGAAT[A/C]TCAAATAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTGCTTTTTCCAGGGCAAACGCCCCTTTTTTATGAGCAAGATACAGAAT</left_flank>
        <right_flank>TCAAATAATTTCTAGCTTCGAAATACTGATTTTTCGTGGTCAAATCCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCATCCGATACGTCCATCAGAGTGAGTTTTTTCGTGTGTTTTGTGGGTCAGAAATGGCCTAACATGACCCTGGTACATTTTCTAGGTCATTCTAACGTGGTCCCTAGTTTTTGCATGTTGAGTTTTCTAGGGGACATGAAAGTTAGTGGCCTAGGAAACTCAACATGCTAAATTTAGGGCACCACGTTGAAATGACCTAGAAAACAAACCAGGGGAATATCATGCCATTTTCAAGCCATAAAAGGTTATGGCCTAGAAAACTCATTTTCCAAAAATTAGGCCGCAATAGTCAATGGCCTAGAAAACCTAAAAACTGTAAATTCGAAATTTGCAGATGGTAATGATGGGCTGCTTCTATCTCGCCATGAAGATCGACGAGTTTTATATCACTATTGATGATTTTGTCAAGAACATGAAGTGAGTTTTTCAATCAAATGCGGGCCGAATCATTGCTTTTTCCAGGGCAAACGCCCCTTTTTTATGAGCAAGATACAGAATTTCAAATAATTTCTAGCTTCGAAATACTGATTTTTCGTGGTCAAATCCTGATTTTCGACCTCCCAACTGAGAAAAATCATATAAAAAATGATCATCATCAATTTCTAGTGTGGGCGACCCTCGTCAAAATGCCGAACGAATTCTGAAGCTGGAGCCGGAATTGATGAAAGTTCTGAATTACAACCTTACCGTACACTGCCCATATCGTCCGTTCGAAGGTCATCTGATGGATATGAAGACTCGAATGCTTCTGCTGAATTTCGACCTCGAATCAATTCGTAGGGACTCGATGAGGTTCTTCCAGAATGCCCTGCAAACGGACGTTCTTCTTGTCTACCCACCATCTCAGATTGCATTGGCTGCTATCAATTTTGGCTGCATGCTCAAGGTAAATGGGCGGGAAGTTTGAATTTCAAAAATTCAAAAAGTTCCAGGAAAGTCGGATGAGATTCTCAGAGAGTTTCTGAGAAAAATGATTGGGATCGAGGAGGATTCGTGGTC</canonical>
            <polymorphic>TCCATCCGATACGTCCATCAGAGTGAGTTTTTTCGTGTGTTTTGTGGGTCAGAAATGGCCTAACATGACCCTGGTACATTTTCTAGGTCATTCTAACGTGGTCCCTAGTTTTTGCATGTTGAGTTTTCTAGGGGACATGAAAGTTAGTGGCCTAGGAAACTCAACATGCTAAATTTAGGGCACCACGTTGAAATGACCTAGAAAACAAACCAGGGGAATATCATGCCATTTTCAAGCCATAAAAGGTTATGGCCTAGAAAACTCATTTTCCAAAAATTAGGCCGCAATAGTCAATGGCCTAGAAAACCTAAAAACTGTAAATTCGAAATTTGCAGATGGTAATGATGGGCTGCTTCTATCTCGCCATGAAGATCGACGAGTTTTATATCACTATTGATGATTTTGTCAAGAACATGAAGTGAGTTTTTCAATCAAATGCGGGCCGAATCATTGCTTTTTCCAGGGCAAACGCCCCTTTTTTATGAGCAAGATACAGAATMTCAAATAATTTCTAGCTTCGAAATACTGATTTTTCGTGGTCAAATCCTGATTTTCGACCTCCCAACTGAGAAAAATCATATAAAAAATGATCATCATCAATTTCTAGTGTGGGCGACCCTCGTCAAAATGCCGAACGAATTCTGAAGCTGGAGCCGGAATTGATGAAAGTTCTGAATTACAACCTTACCGTACACTGCCCATATCGTCCGTTCGAAGGTCATCTGATGGATATGAAGACTCGAATGCTTCTGCTGAATTTCGACCTCGAATCAATTCGTAGGGACTCGATGAGGTTCTTCCAGAATGCCCTGCAAACGGACGTTCTTCTTGTCTACCCACCATCTCAGATTGCATTGGCTGCTATCAATTTTGGCTGCATGCTCAAGGTAAATGGGCGGGAAGTTTGAATTTCAAAAATTCAAAAAGTTCCAGGAAAGTCGGATGAGATTCTCAGAGAGTTTCTGAGAAAAATGATTGGGATCGAGGAGGATTCGTGGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>171 170 152 148 141 118 84 9 7</canonical_bands>
                <polymorphic_bands>311 171 152 148 118 84 9 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>171 170 103 94 92 84 81 45 41 39 20 17 17 10 9 7</canonical_bands>
                <polymorphic_bands>180 171 103 94 92 84 81 45 41 39 20 17 17 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAGATCGACGAGTTTTATATC</pcr_primer_p1>
		<pcr_primer_p2>CCACACTAGAAATTGATGATGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TGAAGATCGACGAGTTTTATATCACTATTGATGATTTTGTCAAGAACATGAAGTGAGTTTTTCAATCAAATGCGGGCCGAATCATTGCTTTTTCCAGGGCAAACGCCCCTTTTTTATGAGCAAGATACAGAATTTCAAATAATTTCTAGCTTCGAAATACTGATTTTTCGTGGTCAAATCCTGATTTTCGACCTCCCAACTGAGAAAAATCATATAAAAAATGATCATCATCAATTTCTAGTGTGG</canonical_amplicon>
		<polymorphic_amplicon>TGAAGATCGACGAGTTTTATATCACTATTGATGATTTTGTCAAGAACATGAAGTGAGTTTTTCAATCAAATGCGGGCCGAATCATTGCTTTTTCCAGGGCAAACGCCCCTTTTTTATGAGCAAGATACAGAATMTCAAATAATTTCTAGCTTCGAAATACTGATTTTTCGTGGTCAAATCCTGATTTTCGACCTCCCAACTGAGAAAAATCATATAAAAAATGATCATCATCAATTTCTAGTGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36929</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>29946</contig_pos>
        <strand>+</strand>
        <context>TTTTCGTGGT[A/C]AAATCCTGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATACAGAATTTCAAATAATTTCTAGCTTCGAAATACTGATTTTTCGTGGT</left_flank>
        <right_flank>AAATCCTGATTTTCGACCTCCCAACTGAGAAAAATCATATAAAAAATGAT</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTGGGTCAGAAATGGCCTAACATGACCCTGGTACATTTTCTAGGTCATTCTAACGTGGTCCCTAGTTTTTGCATGTTGAGTTTTCTAGGGGACATGAAAGTTAGTGGCCTAGGAAACTCAACATGCTAAATTTAGGGCACCACGTTGAAATGACCTAGAAAACAAACCAGGGGAATATCATGCCATTTTCAAGCCATAAAAGGTTATGGCCTAGAAAACTCATTTTCCAAAAATTAGGCCGCAATAGTCAATGGCCTAGAAAACCTAAAAACTGTAAATTCGAAATTTGCAGATGGTAATGATGGGCTGCTTCTATCTCGCCATGAAGATCGACGAGTTTTATATCACTATTGATGATTTTGTCAAGAACATGAAGTGAGTTTTTCAATCAAATGCGGGCCGAATCATTGCTTTTTCCAGGGCAAACGCCCCTTTTTTATGAGCAAGATACAGAATTTCAAATAATTTCTAGCTTCGAAATACTGATTTTTCGTGGTCAAATCCTGATTTTCGACCTCCCAACTGAGAAAAATCATATAAAAAATGATCATCATCAATTTCTAGTGTGGGCGACCCTCGTCAAAATGCCGAACGAATTCTGAAGCTGGAGCCGGAATTGATGAAAGTTCTGAATTACAACCTTACCGTACACTGCCCATATCGTCCGTTCGAAGGTCATCTGATGGATATGAAGACTCGAATGCTTCTGCTGAATTTCGACCTCGAATCAATTCGTAGGGACTCGATGAGGTTCTTCCAGAATGCCCTGCAAACGGACGTTCTTCTTGTCTACCCACCATCTCAGATTGCATTGGCTGCTATCAATTTTGGCTGCATGCTCAAGGTAAATGGGCGGGAAGTTTGAATTTCAAAAATTCAAAAAGTTCCAGGAAAGTCGGATGAGATTCTCAGAGAGTTTCTGAGAAAAATGATTGGGATCGAGGAGGATTCGTGGTCGGCCAGAGATGTGAGACCAGAGGATTTGGAAAAGTTGGAGA</canonical>
            <polymorphic>TTGTGGGTCAGAAATGGCCTAACATGACCCTGGTACATTTTCTAGGTCATTCTAACGTGGTCCCTAGTTTTTGCATGTTGAGTTTTCTAGGGGACATGAAAGTTAGTGGCCTAGGAAACTCAACATGCTAAATTTAGGGCACCACGTTGAAATGACCTAGAAAACAAACCAGGGGAATATCATGCCATTTTCAAGCCATAAAAGGTTATGGCCTAGAAAACTCATTTTCCAAAAATTAGGCCGCAATAGTCAATGGCCTAGAAAACCTAAAAACTGTAAATTCGAAATTTGCAGATGGTAATGATGGGCTGCTTCTATCTCGCCATGAAGATCGACGAGTTTTATATCACTATTGATGATTTTGTCAAGAACATGAAGTGAGTTTTTCAATCAAATGCGGGCCGAATCATTGCTTTTTCCAGGGCAAACGCCCCTTTTTTATGAGCAAGATACAGAATTTCAAATAATTTCTAGCTTCGAAATACTGATTTTTCGTGGTMAAATCCTGATTTTCGACCTCCCAACTGAGAAAAATCATATAAAAAATGATCATCATCAATTTCTAGTGTGGGCGACCCTCGTCAAAATGCCGAACGAATTCTGAAGCTGGAGCCGGAATTGATGAAAGTTCTGAATTACAACCTTACCGTACACTGCCCATATCGTCCGTTCGAAGGTCATCTGATGGATATGAAGACTCGAATGCTTCTGCTGAATTTCGACCTCGAATCAATTCGTAGGGACTCGATGAGGTTCTTCCAGAATGCCCTGCAAACGGACGTTCTTCTTGTCTACCCACCATCTCAGATTGCATTGGCTGCTATCAATTTTGGCTGCATGCTCAAGGTAAATGGGCGGGAAGTTTGAATTTCAAAAATTCAAAAAGTTCCAGGAAAGTCGGATGAGATTCTCAGAGAGTTTCTGAGAAAAATGATTGGGATCGAGGAGGATTCGTGGTCGGCCAGAGATGTGAGACCAGAGGATTTGGAAAAGTTGGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGATCGACGAGTTTTATATC</pcr_primer_p1>
		<pcr_primer_p2>CCACACTAGAAATTGATGATGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TGAAGATCGACGAGTTTTATATCACTATTGATGATTTTGTCAAGAACATGAAGTGAGTTTTTCAATCAAATGCGGGCCGAATCATTGCTTTTTCCAGGGCAAACGCCCCTTTTTTATGAGCAAGATACAGAATTTCAAATAATTTCTAGCTTCGAAATACTGATTTTTCGTGGTCAAATCCTGATTTTCGACCTCCCAACTGAGAAAAATCATATAAAAAATGATCATCATCAATTTCTAGTGTGG</canonical_amplicon>
		<polymorphic_amplicon>TGAAGATCGACGAGTTTTATATCACTATTGATGATTTTGTCAAGAACATGAAGTGAGTTTTTCAATCAAATGCGGGCCGAATCATTGCTTTTTCCAGGGCAAACGCCCCTTTTTTATGAGCAAGATACAGAATTTCAAATAATTTCTAGCTTCGAAATACTGATTTTTCGTGGTMAAATCCTGATTTTCGACCTCCCAACTGAGAAAAATCATATAAAAAATGATCATCATCAATTTCTAGTGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36930</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>30097</contig_pos>
        <strand>+</strand>
        <context>ACCTTACCGT[A/T]CACTGCCCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGAAGCTGGAGCCGGAATTGATGAAAGTTCTGAATTACAACCTTACCGT</left_flank>
        <right_flank>CACTGCCCATATCGTCCGTTCGAAGGTCATCTGATGGATATGAAGACTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGACCTAGAAAACAAACCAGGGGAATATCATGCCATTTTCAAGCCATAAAAGGTTATGGCCTAGAAAACTCATTTTCCAAAAATTAGGCCGCAATAGTCAATGGCCTAGAAAACCTAAAAACTGTAAATTCGAAATTTGCAGATGGTAATGATGGGCTGCTTCTATCTCGCCATGAAGATCGACGAGTTTTATATCACTATTGATGATTTTGTCAAGAACATGAAGTGAGTTTTTCAATCAAATGCGGGCCGAATCATTGCTTTTTCCAGGGCAAACGCCCCTTTTTTATGAGCAAGATACAGAATTTCAAATAATTTCTAGCTTCGAAATACTGATTTTTCGTGGTCAAATCCTGATTTTCGACCTCCCAACTGAGAAAAATCATATAAAAAATGATCATCATCAATTTCTAGTGTGGGCGACCCTCGTCAAAATGCCGAACGAATTCTGAAGCTGGAGCCGGAATTGATGAAAGTTCTGAATTACAACCTTACCGTACACTGCCCATATCGTCCGTTCGAAGGTCATCTGATGGATATGAAGACTCGAATGCTTCTGCTGAATTTCGACCTCGAATCAATTCGTAGGGACTCGATGAGGTTCTTCCAGAATGCCCTGCAAACGGACGTTCTTCTTGTCTACCCACCATCTCAGATTGCATTGGCTGCTATCAATTTTGGCTGCATGCTCAAGGTAAATGGGCGGGAAGTTTGAATTTCAAAAATTCAAAAAGTTCCAGGAAAGTCGGATGAGATTCTCAGAGAGTTTCTGAGAAAAATGATTGGGATCGAGGAGGATTCGTGGTCGGCCAGAGATGTGAGACCAGAGGATTTGGAAAAGTTGGAGAAGACTGTCACTAGGTACTGTTTATTTGTAAAAAATCAAACTTTTTAAAATTCGAAAAAAAAAGTAGATTTCTTGCCAATAGAGCGATTTTCCAATATTTCTCAATAGAGCGCATTTTCAAAATTCAAGAATTATCATTTTTGCAGAGTCAA</canonical>
            <polymorphic>ATGACCTAGAAAACAAACCAGGGGAATATCATGCCATTTTCAAGCCATAAAAGGTTATGGCCTAGAAAACTCATTTTCCAAAAATTAGGCCGCAATAGTCAATGGCCTAGAAAACCTAAAAACTGTAAATTCGAAATTTGCAGATGGTAATGATGGGCTGCTTCTATCTCGCCATGAAGATCGACGAGTTTTATATCACTATTGATGATTTTGTCAAGAACATGAAGTGAGTTTTTCAATCAAATGCGGGCCGAATCATTGCTTTTTCCAGGGCAAACGCCCCTTTTTTATGAGCAAGATACAGAATTTCAAATAATTTCTAGCTTCGAAATACTGATTTTTCGTGGTCAAATCCTGATTTTCGACCTCCCAACTGAGAAAAATCATATAAAAAATGATCATCATCAATTTCTAGTGTGGGCGACCCTCGTCAAAATGCCGAACGAATTCTGAAGCTGGAGCCGGAATTGATGAAAGTTCTGAATTACAACCTTACCGTWCACTGCCCATATCGTCCGTTCGAAGGTCATCTGATGGATATGAAGACTCGAATGCTTCTGCTGAATTTCGACCTCGAATCAATTCGTAGGGACTCGATGAGGTTCTTCCAGAATGCCCTGCAAACGGACGTTCTTCTTGTCTACCCACCATCTCAGATTGCATTGGCTGCTATCAATTTTGGCTGCATGCTCAAGGTAAATGGGCGGGAAGTTTGAATTTCAAAAATTCAAAAAGTTCCAGGAAAGTCGGATGAGATTCTCAGAGAGTTTCTGAGAAAAATGATTGGGATCGAGGAGGATTCGTGGTCGGCCAGAGATGTGAGACCAGAGGATTTGGAAAAGTTGGAGAAGACTGTCACTAGGTACTGTTTATTTGTAAAAAATCAAACTTTTTAAAATTCGAAAAAAAAAGTAGATTTCTTGCCAATAGAGCGATTTTCCAATATTTCTCAATAGAGCGCATTTTCAAAATTCAAGAATTATCATTTTTGCAGAGTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 365 136</canonical_bands>
                <polymorphic_bands>864 136</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTCTAGCTTCGAAATACTGA</pcr_primer_p1>
		<pcr_primer_p2>GAAGCATTCGAGTCTTCATATC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AATTTCTAGCTTCGAAATACTGATTTTTCGTGGTCAAATCCTGATTTTCGACCTCCCAACTGAGAAAAATCATATAAAAAATGATCATCATCAATTTCTAGTGTGGGCGACCCTCGTCAAAATGCCGAACGAATTCTGAAGCTGGAGCCGGAATTGATGAAAGTTCTGAATTACAACCTTACCGTACACTGCCCATATCGTCCGTTCGAAGGTCATCTGATGGATATGAAGACTCGAATGCTTC</canonical_amplicon>
		<polymorphic_amplicon>AATTTCTAGCTTCGAAATACTGATTTTTCGTGGTCAAATCCTGATTTTCGACCTCCCAACTGAGAAAAATCATATAAAAAATGATCATCATCAATTTCTAGTGTGGGCGACCCTCGTCAAAATGCCGAACGAATTCTGAAGCTGGAGCCGGAATTGATGAAAGTTCTGAATTACAACCTTACCGTWCACTGCCCATATCGTCCGTTCGAAGGTCATCTGATGGATATGAAGACTCGAATGCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36931</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>76225</contig_pos>
        <strand></strand>
        <context>atttttctcg[G/C]ttcctgtcaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AGTCGCGACGAGAGTTGACAAGAAGGTCTGGAAAAGTGGAATTTTTCTCG</left_flank>
        <right_flank>TTCCTGTCAAAGATATGGGCAATGATCAACTGATAAAATGTTTATCATAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGGCACGCAGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTGAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACCAAAAAACTTCGAAAAATCTCCTGTCCCCCCACCTTTAATTAAAATTTTTCAATTTGTTTGGTTTGTTCTTTACAGATAAAAAAAAATGTATCTTACATTTCTCAAATACTTTCTGTACGCTGTCATATGGCTTGAAAAGAGGGTAGTGTTCAAGTAATAGTCTCGAGTTCCACGACCCAGTGCCAAAGTGGATTGATCGATCTGAAAATTGAAATATGGTTCTAGAAGACTCCACGAAATTTGAGGGTTCTTACAAAGAGAGTGTTCCTTGAGGTATTTTTGGAATCCGCGTAGATATAAAGTTGGAAGAAGACGTCAACACCATAGTCGCGACGAGAGTTGACAAGAAGGTCTGGAAAAGTGGAATTTTTCTCGGTTCCTGTCAAAGATATGGGCAATGATCAACTGATAAAATGTTTATCATAACACTCCAAGACGCCGTATCTGCTCAAATAAAACCATACCTTAAGCCGTCATCTTTGAGCTCAATTAGCTCGATTCCTAATACAGATACAAAAATATAGTTAACTAACAAAATGTTTGTCATAAGATAAGCAACATTTTATCAGTTGAAAGTTTTTTAATACCTCTTATAGAAATTGAGATAATTGAGCTGAAAGTGACAGTATAAGGTGGTCTTCCATTAGAGGGATTACGGTATTTCTATATCTCATTAAAAGTGATACAAAATTTCAAAAAATCCTTTTTTGCAGAATCATGACAGTAGCTAGATTTGAGGAAACACTTTGAAAATTTCAGGTGATTTGAATCAAACGTAAAATTATATTTCTACCAATTTTCGTGCTTCCAAGATAATTATGTCAAAAGATATACCAGTTTCTGTCAGTCCGGGTAGTTCCGCCCCCTCAATTCCTT</canonical>
            <polymorphic>TGAGGCACGCAGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTGAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACCAAAAAACTTCGAAAAATCTCCTGTCCCCCCACCTTTAATTAAAATTTTTCAATTTGTTTGGTTTGTTCTTTACAGATAAAAAAAAATGTATCTTACATTTCTCAAATACTTTCTGTACGCTGTCATATGGCTTGAAAAGAGGGTAGTGTTCAAGTAATAGTCTCGAGTTCCACGACCCAGTGCCAAAGTGGATTGATCGATCTGAAAATTGAAATATGGTTCTAGAAGACTCCACGAAATTTGAGGGTTCTTACAAAGAGAGTGTTCCTTGAGGTATTTTTGGAATCCGCGTAGATATAAAGTTGGAAGAAGACGTCAACACCATAGTCGCGACGAGAGTTGACAAGAAGGTCTGGAAAAGTGGAATTTTTCTCGSTTCCTGTCAAAGATATGGGCAATGATCAACTGATAAAATGTTTATCATAACACTCCAAGACGCCGTATCTGCTCAAATAAAACCATACCTTAAGCCGTCATCTTTGAGCTCAATTAGCTCGATTCCTAATACAGATACAAAAATATAGTTAACTAACAAAATGTTTGTCATAAGATAAGCAACATTTTATCAGTTGAAAGTTTTTTAATACCTCTTATAGAAATTGAGATAATTGAGCTGAAAGTGACAGTATAAGGTGGTCTTCCATTAGAGGGATTACGGTATTTCTATATCTCATTAAAAGTGATACAAAATTTCAAAAAATCCTTTTTTGCAGAATCATGACAGTAGCTAGATTTGAGGAAACACTTTGAAAATTTCAGGTGATTTGAATCAAACGTAAAATTATATTTCTACCAATTTTCGTGCTTCCAAGATAATTATGTCAAAAGATATACCAGTTTCTGTCAGTCCGGGTAGTTCCGCCCCCTCAATTCCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAGACGTCAACACCATAGTC</pcr_primer_p1>
		<pcr_primer_p2>TTGAAATTTTGTATCACTTTTAATG</pcr_primer_p2>
		<pcr_amplicon_size>389</pcr_amplicon_size>
		<canonical_amplicon>AGAAGACGTCAACACCATAGTCGCGACGAGAGTTGACAAGAAGGTCTGGAAAAGTGGAATTTTTCTCGGTTCCTGTCAAAGATATGGGCAATGATCAACTGATAAAATGTTTATCATAACACTCCAAGACGCCGTATCTGCTCAAATAAAACCATACCTTAAGCCGTCATCTTTGAGCTCAATTAGCTCGATTCCTAATACAGATACAAAAATATAGTTAACTAACAAAATGTTTGTCATAAGATAAGCAACATTTTATCAGTTGAAAGTTTTTTAATACCTCTTATAGAAATTGAGATAATTGAGCTGAAAGTGACAGTATAAGGTGGTCTTCCATTAGAGGGATTACGGTATTTCTATATCTCATTAAAAGTGATACAAAATTTCAA</canonical_amplicon>
		<polymorphic_amplicon>AGAAGACGTCAACACCATAGTCGCGACGAGAGTTGACAAGAAGGTCTGGAAAAGTGGAATTTTTCTCGSTTCCTGTCAAAGATATGGGCAATGATCAACTGATAAAATGTTTATCATAACACTCCAAGACGCCGTATCTGCTCAAATAAAACCATACCTTAAGCCGTCATCTTTGAGCTCAATTAGCTCGATTCCTAATACAGATACAAAAATATAGTTAACTAACAAAATGTTTGTCATAAGATAAGCAACATTTTATCAGTTGAAAGTTTTTTAATACCTCTTATAGAAATTGAGATAATTGAGCTGAAAGTGACAGTATAAGGTGGTCTTCCATTAGAGGGATTACGGTATTTCTATATCTCATTAAAAGTGATACAAAATTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36932</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>76342</contig_pos>
        <strand></strand>
        <context>agctcaatta[G/T]ctcgattcct</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATCTGCTCAAATAAAACCATACCTTAAGCCGTCATCTTTGAGCTCAATTA</left_flank>
        <right_flank>CTCGATTCCTAATACAGATACAAAAATATAGTTAACTAACAAAATGTTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTACCAAAAAACTTCGAAAAATCTCCTGTCCCCCCACCTTTAATTAAAATTTTTCAATTTGTTTGGTTTGTTCTTTACAGATAAAAAAAAATGTATCTTACATTTCTCAAATACTTTCTGTACGCTGTCATATGGCTTGAAAAGAGGGTAGTGTTCAAGTAATAGTCTCGAGTTCCACGACCCAGTGCCAAAGTGGATTGATCGATCTGAAAATTGAAATATGGTTCTAGAAGACTCCACGAAATTTGAGGGTTCTTACAAAGAGAGTGTTCCTTGAGGTATTTTTGGAATCCGCGTAGATATAAAGTTGGAAGAAGACGTCAACACCATAGTCGCGACGAGAGTTGACAAGAAGGTCTGGAAAAGTGGAATTTTTCTCGGTTCCTGTCAAAGATATGGGCAATGATCAACTGATAAAATGTTTATCATAACACTCCAAGACGCCGTATCTGCTCAAATAAAACCATACCTTAAGCCGTCATCTTTGAGCTCAATTAGCTCGATTCCTAATACAGATACAAAAATATAGTTAACTAACAAAATGTTTGTCATAAGATAAGCAACATTTTATCAGTTGAAAGTTTTTTAATACCTCTTATAGAAATTGAGATAATTGAGCTGAAAGTGACAGTATAAGGTGGTCTTCCATTAGAGGGATTACGGTATTTCTATATCTCATTAAAAGTGATACAAAATTTCAAAAAATCCTTTTTTGCAGAATCATGACAGTAGCTAGATTTGAGGAAACACTTTGAAAATTTCAGGTGATTTGAATCAAACGTAAAATTATATTTCTACCAATTTTCGTGCTTCCAAGATAATTATGTCAAAAGATATACCAGTTTCTGTCAGTCCGGGTAGTTCCGCCCCCTCAATTCCTTAAAGGGGCATGCTGACGCAAACCAAATAGAAATGGATGTTCTAAACTCACTTGTCAAATTGAATGTTGTCTTGTTCCAACTTTCATGTAGAAGTGGCCACTCTCCGAGTTCCGTCAG</canonical>
            <polymorphic>AGCTACCAAAAAACTTCGAAAAATCTCCTGTCCCCCCACCTTTAATTAAAATTTTTCAATTTGTTTGGTTTGTTCTTTACAGATAAAAAAAAATGTATCTTACATTTCTCAAATACTTTCTGTACGCTGTCATATGGCTTGAAAAGAGGGTAGTGTTCAAGTAATAGTCTCGAGTTCCACGACCCAGTGCCAAAGTGGATTGATCGATCTGAAAATTGAAATATGGTTCTAGAAGACTCCACGAAATTTGAGGGTTCTTACAAAGAGAGTGTTCCTTGAGGTATTTTTGGAATCCGCGTAGATATAAAGTTGGAAGAAGACGTCAACACCATAGTCGCGACGAGAGTTGACAAGAAGGTCTGGAAAAGTGGAATTTTTCTCGGTTCCTGTCAAAGATATGGGCAATGATCAACTGATAAAATGTTTATCATAACACTCCAAGACGCCGTATCTGCTCAAATAAAACCATACCTTAAGCCGTCATCTTTGAGCTCAATTAKCTCGATTCCTAATACAGATACAAAAATATAGTTAACTAACAAAATGTTTGTCATAAGATAAGCAACATTTTATCAGTTGAAAGTTTTTTAATACCTCTTATAGAAATTGAGATAATTGAGCTGAAAGTGACAGTATAAGGTGGTCTTCCATTAGAGGGATTACGGTATTTCTATATCTCATTAAAAGTGATACAAAATTTCAAAAAATCCTTTTTTGCAGAATCATGACAGTAGCTAGATTTGAGGAAACACTTTGAAAATTTCAGGTGATTTGAATCAAACGTAAAATTATATTTCTACCAATTTTCGTGCTTCCAAGATAATTATGTCAAAAGATATACCAGTTTCTGTCAGTCCGGGTAGTTCCGCCCCCTCAATTCCTTAAAGGGGCATGCTGACGCAAACCAAATAGAAATGGATGTTCTAAACTCACTTGTCAAATTGAATGTTGTCTTGTTCCAACTTTCATGTAGAAGTGGCCACTCTCCGAGTTCCGTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>489 266 120 114 9 2</canonical_bands>
                <polymorphic_bands>489 266 129 114 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 451 46</canonical_bands>
                <polymorphic_bands>549 451</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>340 245 135 120 114 21 14 9 2</canonical_bands>
                <polymorphic_bands>340 245 135 129 114 21 14 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGACAAGAAGGTCTGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAAATTTTGTATCACTTTTAATG</pcr_primer_p2>
		<pcr_amplicon_size>356</pcr_amplicon_size>
		<canonical_amplicon>TGACAAGAAGGTCTGGAAAAGTGGAATTTTTCTCGGTTCCTGTCAAAGATATGGGCAATGATCAACTGATAAAATGTTTATCATAACACTCCAAGACGCCGTATCTGCTCAAATAAAACCATACCTTAAGCCGTCATCTTTGAGCTCAATTAGCTCGATTCCTAATACAGATACAAAAATATAGTTAACTAACAAAATGTTTGTCATAAGATAAGCAACATTTTATCAGTTGAAAGTTTTTTAATACCTCTTATAGAAATTGAGATAATTGAGCTGAAAGTGACAGTATAAGGTGGTCTTCCATTAGAGGGATTACGGTATTTCTATATCTCATTAAAAGTGATACAAAATTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TGACAAGAAGGTCTGGAAAAGTGGAATTTTTCTCGGTTCCTGTCAAAGATATGGGCAATGATCAACTGATAAAATGTTTATCATAACACTCCAAGACGCCGTATCTGCTCAAATAAAACCATACCTTAAGCCGTCATCTTTGAGCTCAATTAKCTCGATTCCTAATACAGATACAAAAATATAGTTAACTAACAAAATGTTTGTCATAAGATAAGCAACATTTTATCAGTTGAAAGTTTTTTAATACCTCTTATAGAAATTGAGATAATTGAGCTGAAAGTGACAGTATAAGGTGGTCTTCCATTAGAGGGATTACGGTATTTCTATATCTCATTAAAAGTGATACAAAATTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36933</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>76423</contig_pos>
        <strand></strand>
        <context>tatcagttga[A/C]agttttttaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTAACTAACAAAATGTTTGTCATAAGATAAGCAACATTTTATCAGTTGA</left_flank>
        <right_flank>AGTTTTTTAATACCTCTTATAGAAATTGAGATAATTGAGCTGAAAGTGAC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAAAAAAAAATGTATCTTACATTTCTCAAATACTTTCTGTACGCTGTCATATGGCTTGAAAAGAGGGTAGTGTTCAAGTAATAGTCTCGAGTTCCACGACCCAGTGCCAAAGTGGATTGATCGATCTGAAAATTGAAATATGGTTCTAGAAGACTCCACGAAATTTGAGGGTTCTTACAAAGAGAGTGTTCCTTGAGGTATTTTTGGAATCCGCGTAGATATAAAGTTGGAAGAAGACGTCAACACCATAGTCGCGACGAGAGTTGACAAGAAGGTCTGGAAAAGTGGAATTTTTCTCGGTTCCTGTCAAAGATATGGGCAATGATCAACTGATAAAATGTTTATCATAACACTCCAAGACGCCGTATCTGCTCAAATAAAACCATACCTTAAGCCGTCATCTTTGAGCTCAATTAGCTCGATTCCTAATACAGATACAAAAATATAGTTAACTAACAAAATGTTTGTCATAAGATAAGCAACATTTTATCAGTTGAAAGTTTTTTAATACCTCTTATAGAAATTGAGATAATTGAGCTGAAAGTGACAGTATAAGGTGGTCTTCCATTAGAGGGATTACGGTATTTCTATATCTCATTAAAAGTGATACAAAATTTCAAAAAATCCTTTTTTGCAGAATCATGACAGTAGCTAGATTTGAGGAAACACTTTGAAAATTTCAGGTGATTTGAATCAAACGTAAAATTATATTTCTACCAATTTTCGTGCTTCCAAGATAATTATGTCAAAAGATATACCAGTTTCTGTCAGTCCGGGTAGTTCCGCCCCCTCAATTCCTTAAAGGGGCATGCTGACGCAAACCAAATAGAAATGGATGTTCTAAACTCACTTGTCAAATTGAATGTTGTCTTGTTCCAACTTTCATGTAGAAGTGGCCACTCTCCGAGTTCCGTCAGGGTTTCGATGAGAGGTCTGTAAAGTTCCCATCAATTTTGCAACTTGATACTGTAAACATTTCCATTGCTAGCAATTGGCTT</canonical>
            <polymorphic>GATAAAAAAAAATGTATCTTACATTTCTCAAATACTTTCTGTACGCTGTCATATGGCTTGAAAAGAGGGTAGTGTTCAAGTAATAGTCTCGAGTTCCACGACCCAGTGCCAAAGTGGATTGATCGATCTGAAAATTGAAATATGGTTCTAGAAGACTCCACGAAATTTGAGGGTTCTTACAAAGAGAGTGTTCCTTGAGGTATTTTTGGAATCCGCGTAGATATAAAGTTGGAAGAAGACGTCAACACCATAGTCGCGACGAGAGTTGACAAGAAGGTCTGGAAAAGTGGAATTTTTCTCGGTTCCTGTCAAAGATATGGGCAATGATCAACTGATAAAATGTTTATCATAACACTCCAAGACGCCGTATCTGCTCAAATAAAACCATACCTTAAGCCGTCATCTTTGAGCTCAATTAGCTCGATTCCTAATACAGATACAAAAATATAGTTAACTAACAAAATGTTTGTCATAAGATAAGCAACATTTTATCAGTTGAMAGTTTTTTAATACCTCTTATAGAAATTGAGATAATTGAGCTGAAAGTGACAGTATAAGGTGGTCTTCCATTAGAGGGATTACGGTATTTCTATATCTCATTAAAAGTGATACAAAATTTCAAAAAATCCTTTTTTGCAGAATCATGACAGTAGCTAGATTTGAGGAAACACTTTGAAAATTTCAGGTGATTTGAATCAAACGTAAAATTATATTTCTACCAATTTTCGTGCTTCCAAGATAATTATGTCAAAAGATATACCAGTTTCTGTCAGTCCGGGTAGTTCCGCCCCCTCAATTCCTTAAAGGGGCATGCTGACGCAAACCAAATAGAAATGGATGTTCTAAACTCACTTGTCAAATTGAATGTTGTCTTGTTCCAACTTTCATGTAGAAGTGGCCACTCTCCGAGTTCCGTCAGGGTTTCGATGAGAGGTCTGTAAAGTTCCCATCAATTTTGCAACTTGATACTGTAAACATTTCCATTGCTAGCAATTGGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACAAGAAGGTCTGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAAATTTTGTATCACTTTTAATG</pcr_primer_p2>
		<pcr_amplicon_size>356</pcr_amplicon_size>
		<canonical_amplicon>TGACAAGAAGGTCTGGAAAAGTGGAATTTTTCTCGGTTCCTGTCAAAGATATGGGCAATGATCAACTGATAAAATGTTTATCATAACACTCCAAGACGCCGTATCTGCTCAAATAAAACCATACCTTAAGCCGTCATCTTTGAGCTCAATTAGCTCGATTCCTAATACAGATACAAAAATATAGTTAACTAACAAAATGTTTGTCATAAGATAAGCAACATTTTATCAGTTGAAAGTTTTTTAATACCTCTTATAGAAATTGAGATAATTGAGCTGAAAGTGACAGTATAAGGTGGTCTTCCATTAGAGGGATTACGGTATTTCTATATCTCATTAAAAGTGATACAAAATTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TGACAAGAAGGTCTGGAAAAGTGGAATTTTTCTCGGTTCCTGTCAAAGATATGGGCAATGATCAACTGATAAAATGTTTATCATAACACTCCAAGACGCCGTATCTGCTCAAATAAAACCATACCTTAAGCCGTCATCTTTGAGCTCAATTAGCTCGATTCCTAATACAGATACAAAAATATAGTTAACTAACAAAATGTTTGTCATAAGATAAGCAACATTTTATCAGTTGAMAGTTTTTTAATACCTCTTATAGAAATTGAGATAATTGAGCTGAAAGTGACAGTATAAGGTGGTCTTCCATTAGAGGGATTACGGTATTTCTATATCTCATTAAAAGTGATACAAAATTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36934</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>78572</contig_pos>
        <strand></strand>
        <context>ctttaacagA[A/C]ACCCTCTTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACCGAGTTAAATTGTGTCAAAGATTGAAGTGTAGGAGTTCCTTTAACAGA</left_flank>
        <right_flank>ACCCTCTTATTCATTGTCACTTCGATCCTAATTATCTTTTTTCGTAAATT</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAGGGGTTATTTAAAGTGTCAGATTTTGAAATCCCTATAGTTTGAAATCTAATTGTAAGAATCTTTAATATTAGGTTCTTTAATTTCTCAAATCCTAAAAATCCAAAAATTGATTTAATAGTCAATTCAATTTTCTATGAACTTTGAGCTCAATTATCTCGGTTCCTATGAGAGATATCAAAACGTTGTCAACAGATAAAATGTTGGTAATATTATGATACACATTTTTTCAGTTGACCACTTTTTGATACCTCTAAAGAAAGCGAGATAAATTGACTAAAAGTTGACTGTGCCCATCCTAAACGAAGCCTACCCTACATATACCACTTTGAGCTCAATTATCTCGGTTCATTCAAAAGATATCAATCAGTGATCAGCTAATAAAAAGTTGATGTTAACATGATAAACATTTCGTCCGTTGAACACTTTTTGATATCTTCCCTAGGAACCGAGTTAAATTGTGTCAAAGATTGAAGTGTAGGAGTTCCTTTAACAGAAACCCTCTTATTCATTGTCACTTCGATCCTAATTATCTTTTTTCGTAAATTACTTCTTCTTTGAAAATCAATTTTCTGATATTTAACAATTTTCGAGTCCTCCCTAGTGGCCTAATTTTCCTTCCTAGGCCATCCCAACCCCGACCAACCTTGGTGTTGGCGTATCACTATTCTCACTGATCGTAATCAATTGCATTTGACTCTCATTGCTCCGCAGGTGCACATAATCCGGCGGGTCGTTTCCGAATGGCATTCTGCAAGAAAACATTCTTCGCTTTTTTTCTCTTGAGTGAATGAAGTGCTTGTGAGTGATAACTAAATAGGTGTGGTTGAGAAAAATCACTGATAAGAAAAAAATAAAGCGAACAAAAAGGAAGTTCTATACCACGTTATTCAAACAAAATGGATGATAGGTCACATTGGAAATGTTTTTTCAGAAAAATAACAATATGAATGGGTAAATATGTACAAATAGGAACACCTGGGAAGGAGACAAACTCA</canonical>
            <polymorphic>AATAGGGGTTATTTAAAGTGTCAGATTTTGAAATCCCTATAGTTTGAAATCTAATTGTAAGAATCTTTAATATTAGGTTCTTTAATTTCTCAAATCCTAAAAATCCAAAAATTGATTTAATAGTCAATTCAATTTTCTATGAACTTTGAGCTCAATTATCTCGGTTCCTATGAGAGATATCAAAACGTTGTCAACAGATAAAATGTTGGTAATATTATGATACACATTTTTTCAGTTGACCACTTTTTGATACCTCTAAAGAAAGCGAGATAAATTGACTAAAAGTTGACTGTGCCCATCCTAAACGAAGCCTACCCTACATATACCACTTTGAGCTCAATTATCTCGGTTCATTCAAAAGATATCAATCAGTGATCAGCTAATAAAAAGTTGATGTTAACATGATAAACATTTCGTCCGTTGAACACTTTTTGATATCTTCCCTAGGAACCGAGTTAAATTGTGTCAAAGATTGAAGTGTAGGAGTTCCTTTAACAGAMACCCTCTTATTCATTGTCACTTCGATCCTAATTATCTTTTTTCGTAAATTACTTCTTCTTTGAAAATCAATTTTCTGATATTTAACAATTTTCGAGTCCTCCCTAGTGGCCTAATTTTCCTTCCTAGGCCATCCCAACCCCGACCAACCTTGGTGTTGGCGTATCACTATTCTCACTGATCGTAATCAATTGCATTTGACTCTCATTGCTCCGCAGGTGCACATAATCCGGCGGGTCGTTTCCGAATGGCATTCTGCAAGAAAACATTCTTCGCTTTTTTTCTCTTGAGTGAATGAAGTGCTTGTGAGTGATAACTAAATAGGTGTGGTTGAGAAAAATCACTGATAAGAAAAAAATAAAGCGAACAAAAAGGAAGTTCTATACCACGTTATTCAAACAAAATGGATGATAGGTCACATTGGAAATGTTTTTTCAGAAAAATAACAATATGAATGGGTAAATATGTACAAATAGGAACACCTGGGAAGGAGACAAACTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACGAAGCCTACCCTACATATAC</pcr_primer_p1>
		<pcr_primer_p2>TTTCAAAGAAGAAGTAATTTACGA</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>AACGAAGCCTACCCTACATATACCACTTTGAGCTCAATTATCTCGGTTCATTCAAAAGATATCAATCAGTGATCAGCTAATAAAAAGTTGATGTTAACATGATAAACATTTCGTCCGTTGAACACTTTTTGATATCTTCCCTAGGAACCGAGTTAAATTGTGTCAAAGATTGAAGTGTAGGAGTTCCTTTAACAGAAACCCTCTTATTCATTGTCACTTCGATCCTAATTATCTTTTTTCGTAAATTACTTCTTCTTTGAAA</canonical_amplicon>
		<polymorphic_amplicon>AACGAAGCCTACCCTACATATACCACTTTGAGCTCAATTATCTCGGTTCATTCAAAAGATATCAATCAGTGATCAGCTAATAAAAAGTTGATGTTAACATGATAAACATTTCGTCCGTTGAACACTTTTTGATATCTTCCCTAGGAACCGAGTTAAATTGTGTCAAAGATTGAAGTGTAGGAGTTCCTTTAACAGAMACCCTCTTATTCATTGTCACTTCGATCCTAATTATCTTTTTTCGTAAATTACTTCTTCTTTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36935</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>117146</contig_pos>
        <strand></strand>
        <context>atttatctcc[C/A]aaacaacacc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCC</left_flank>
        <right_flank>AAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGT</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTCCTATTCTGCATACTGTNNCGGGCCGGGCCGGGCTTTTTTCCGAATTTCGGAGNNCCGGCCCGGCATGCCCGTCATTCCACAAGTTTTGAAAATTTCAAAAATACATAAGGGTGATTTTTCTCGATAAAAAATTTTTTCGAGTTTTTTTGATTTTTTTTTCTATCAAACAGACGAACCATCCAAAAAAACAGAAAAATGAAGAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATGCAGGATTTTTTGGCTCAAAAAAATTTGGCTCAAAAATGCAGGAACCCTAAAGTTAACACCACCCCCGACGAGCTTCCCGCAATTTTCCTTAAGAAAACATGTACTGCTATATTTGGCGACAAAGGTAACGCCAAACACAAATATGTTTGACTGTTCCACATGTGGATTTTTCCAGCCGAGAGTCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTT</canonical>
            <polymorphic>TGTTCCTATTCTGCATACTGTNNCGGGCCGGGCCGGGCTTTTTTCCGAATTTCGGAGNNCCGGCCCGGCATGCCCGTCATTCCACAAGTTTTGAAAATTTCAAAAATACATAAGGGTGATTTTTCTCGATAAAAAATTTTTTCGAGTTTTTTTGATTTTTTTTTCTATCAAACAGACGAACCATCCAAAAAAACAGAAAAATGAAGAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATGCAGGATTTTTTGGCTCAAAAAAATTTGGCTCAAAAATGCAGGAACCCTAAAGTTAACACCACCCCCGACGAGCTTCCCGCAATTTTCCTTAAGAAAACATGTACTGCTATATTTGGCGACAAAGGTAACGCCAAACACAAATATGTTTGACTGTTCCACATGTGGATTTTTCCAGCCGAGAGTCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCMAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAATCACATTTACATTTCAG</pcr_primer_p1>
		<pcr_primer_p2>AATGAAGAGTTTTTATTCTGTAACC</pcr_primer_p2>
		<pcr_amplicon_size>350</pcr_amplicon_size>
		<canonical_amplicon>TCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATT</canonical_amplicon>
		<polymorphic_amplicon>TCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCMAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36936</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>117186</contig_pos>
        <strand></strand>
        <context>cccgaagaga[C/G]ttatggatgt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGA</left_flank>
        <right_flank>TTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCCGAATTTCGGAGNNCCGGCCCGGCATGCCCGTCATTCCACAAGTTTTGAAAATTTCAAAAATACATAAGGGTGATTTTTCTCGATAAAAAATTTTTTCGAGTTTTTTTGATTTTTTTTTCTATCAAACAGACGAACCATCCAAAAAAACAGAAAAATGAAGAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATGCAGGATTTTTTGGCTCAAAAAAATTTGGCTCAAAAATGCAGGAACCCTAAAGTTAACACCACCCCCGACGAGCTTCCCGCAATTTTCCTTAAGAAAACATGTACTGCTATATTTGGCGACAAAGGTAACGCCAAACACAAATATGTTTGACTGTTCCACATGTGGATTTTTCCAGCCGAGAGTCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCC</canonical>
            <polymorphic>TTTTCCGAATTTCGGAGNNCCGGCCCGGCATGCCCGTCATTCCACAAGTTTTGAAAATTTCAAAAATACATAAGGGTGATTTTTCTCGATAAAAAATTTTTTCGAGTTTTTTTGATTTTTTTTTCTATCAAACAGACGAACCATCCAAAAAAACAGAAAAATGAAGAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATGCAGGATTTTTTGGCTCAAAAAAATTTGGCTCAAAAATGCAGGAACCCTAAAGTTAACACCACCCCCGACGAGCTTCCCGCAATTTTCCTTAAGAAAACATGTACTGCTATATTTGGCGACAAAGGTAACGCCAAACACAAATATGTTTGACTGTTCCACATGTGGATTTTTCCAGCCGAGAGTCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGASTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAATCACATTTACATTTCAG</pcr_primer_p1>
		<pcr_primer_p2>AATGAAGAGTTTTTATTCTGTAACC</pcr_primer_p2>
		<pcr_amplicon_size>350</pcr_amplicon_size>
		<canonical_amplicon>TCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATT</canonical_amplicon>
		<polymorphic_amplicon>TCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGASTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36937</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>117200</contig_pos>
        <strand></strand>
        <context>tggatgtagt[A/G]aggaacaaag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGT</left_flank>
        <right_flank>AGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGNNCCGGCCCGGCATGCCCGTCATTCCACAAGTTTTGAAAATTTCAAAAATACATAAGGGTGATTTTTCTCGATAAAAAATTTTTTCGAGTTTTTTTGATTTTTTTTTCTATCAAACAGACGAACCATCCAAAAAAACAGAAAAATGAAGAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATGCAGGATTTTTTGGCTCAAAAAAATTTGGCTCAAAAATGCAGGAACCCTAAAGTTAACACCACCCCCGACGAGCTTCCCGCAATTTTCCTTAAGAAAACATGTACTGCTATATTTGGCGACAAAGGTAACGCCAAACACAAATATGTTTGACTGTTCCACATGTGGATTTTTCCAGCCGAGAGTCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAAC</canonical>
            <polymorphic>GAGNNCCGGCCCGGCATGCCCGTCATTCCACAAGTTTTGAAAATTTCAAAAATACATAAGGGTGATTTTTCTCGATAAAAAATTTTTTCGAGTTTTTTTGATTTTTTTTTCTATCAAACAGACGAACCATCCAAAAAAACAGAAAAATGAAGAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATGCAGGATTTTTTGGCTCAAAAAAATTTGGCTCAAAAATGCAGGAACCCTAAAGTTAACACCACCCCCGACGAGCTTCCCGCAATTTTCCTTAAGAAAACATGTACTGCTATATTTGGCGACAAAGGTAACGCCAAACACAAATATGTTTGACTGTTCCACATGTGGATTTTTCCAGCCGAGAGTCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTRAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAATCACATTTACATTTCAG</pcr_primer_p1>
		<pcr_primer_p2>AATGAAGAGTTTTTATTCTGTAACC</pcr_primer_p2>
		<pcr_amplicon_size>350</pcr_amplicon_size>
		<canonical_amplicon>TCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATT</canonical_amplicon>
		<polymorphic_amplicon>TCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTRAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36938</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>117235</contig_pos>
        <strand></strand>
        <context>caatttttat[T/A]aattcatttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTAT</left_flank>
        <right_flank>AATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAAAATTTCAAAAATACATAAGGGTGATTTTTCTCGATAAAAAATTTTTTCGAGTTTTTTTGATTTTTTTTTCTATCAAACAGACGAACCATCCAAAAAAACAGAAAAATGAAGAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATGCAGGATTTTTTGGCTCAAAAAAATTTGGCTCAAAAATGCAGGAACCCTAAAGTTAACACCACCCCCGACGAGCTTCCCGCAATTTTCCTTAAGAAAACATGTACTGCTATATTTGGCGACAAAGGTAACGCCAAACACAAATATGTTTGACTGTTCCACATGTGGATTTTTCCAGCCGAGAGTCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCA</canonical>
            <polymorphic>TTTGAAAATTTCAAAAATACATAAGGGTGATTTTTCTCGATAAAAAATTTTTTCGAGTTTTTTTGATTTTTTTTTCTATCAAACAGACGAACCATCCAAAAAAACAGAAAAATGAAGAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATGCAGGATTTTTTGGCTCAAAAAAATTTGGCTCAAAAATGCAGGAACCCTAAAGTTAACACCACCCCCGACGAGCTTCCCGCAATTTTCCTTAAGAAAACATGTACTGCTATATTTGGCGACAAAGGTAACGCCAAACACAAATATGTTTGACTGTTCCACATGTGGATTTTTCCAGCCGAGAGTCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATWAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>313 255 208 152 36 36</canonical_bands>
                <polymorphic_bands>313 291 208 152 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCAATCACATTTACATTTCAG</pcr_primer_p1>
		<pcr_primer_p2>AATGAAGAGTTTTTATTCTGTAACC</pcr_primer_p2>
		<pcr_amplicon_size>350</pcr_amplicon_size>
		<canonical_amplicon>TCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATT</canonical_amplicon>
		<polymorphic_amplicon>TCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATWAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36939</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>117328</contig_pos>
        <strand></strand>
        <context>tgaatgtgtt[G/A]ccatactttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTT</left_flank>
        <right_flank>CCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCAAAAAAACAGAAAAATGAAGAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATGCAGGATTTTTTGGCTCAAAAAAATTTGGCTCAAAAATGCAGGAACCCTAAAGTTAACACCACCCCCGACGAGCTTCCCGCAATTTTCCTTAAGAAAACATGTACTGCTATATTTGGCGACAAAGGTAACGCCAAACACAAATATGTTTGACTGTTCCACATGTGGATTTTTCCAGCCGAGAGTCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATA</canonical>
            <polymorphic>ATCCAAAAAAACAGAAAAATGAAGAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATGCAGGATTTTTTGGCTCAAAAAAATTTGGCTCAAAAATGCAGGAACCCTAAAGTTAACACCACCCCCGACGAGCTTCCCGCAATTTTCCTTAAGAAAACATGTACTGCTATATTTGGCGACAAAGGTAACGCCAAACACAAATATGTTTGACTGTTCCACATGTGGATTTTTCCAGCCGAGAGTCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTRCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAATCACATTTACATTTCAG</pcr_primer_p1>
		<pcr_primer_p2>AATGAAGAGTTTTTATTCTGTAACC</pcr_primer_p2>
		<pcr_amplicon_size>350</pcr_amplicon_size>
		<canonical_amplicon>TCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATT</canonical_amplicon>
		<polymorphic_amplicon>TCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTRCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36940</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>117395</contig_pos>
        <strand></strand>
        <context>CAAGTATTTT[T/C]YAGGTTACAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTT</left_flank>
        <right_flank>TAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTGGCTCAAAAAAATTTGGCTCAAAAATGCAGGAACCCTAAAGTTAACACCACCCCCGACGAGCTTCCCGCAATTTTCCTTAAGAAAACATGTACTGCTATATTTGGCGACAAAGGTAACGCCAAACACAAATATGTTTGACTGTTCCACATGTGGATTTTTCCAGCCGAGAGTCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTG</canonical>
            <polymorphic>TTTTTTGGCTCAAAAAAATTTGGCTCAAAAATGCAGGAACCCTAAAGTTAACACCACCCCCGACGAGCTTCCCGCAATTTTCCTTAAGAAAACATGTACTGCTATATTTGGCGACAAAGGTAACGCCAAACACAAATATGTTTGACTGTTCCACATGTGGATTTTTCCAGCCGAGAGTCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTYTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAATCACATTTACATTTCAG</pcr_primer_p1>
		<pcr_primer_p2>AATGTTTTGAGATCTTTAGTGTATTC</pcr_primer_p2>
		<pcr_amplicon_size>389</pcr_amplicon_size>
		<canonical_amplicon>TCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATT</canonical_amplicon>
		<polymorphic_amplicon>TCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTYTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36941</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>117396</contig_pos>
        <strand>+</strand>
        <context>AAGTATTTTY[C/T]AGGTTACAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTT</left_flank>
        <right_flank>AGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGGCTCAAAAAAATTTGGCTCAAAAATGCAGGAACCCTAAAGTTAACACCACCCCCGACGAGCTTCCCGCAATTTTCCTTAAGAAAACATGTACTGCTATATTTGGCGACAAAGGTAACGCCAAACACAAATATGTTTGACTGTTCCACATGTGGATTTTTCCAGCCGAGAGTCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGA</canonical>
            <polymorphic>TTTTTGGCTCAAAAAAATTTGGCTCAAAAATGCAGGAACCCTAAAGTTAACACCACCCCCGACGAGCTTCCCGCAATTTTCCTTAAGAAAACATGTACTGCTATATTTGGCGACAAAGGTAACGCCAAACACAAATATGTTTGACTGTTCCACATGTGGATTTTTCCAGCCGAGAGTCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTYAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAATCACATTTACATTTCAG</pcr_primer_p1>
		<pcr_primer_p2>AATGTTTTGAGATCTTTAGTGTATTC</pcr_primer_p2>
		<pcr_amplicon_size>389</pcr_amplicon_size>
		<canonical_amplicon>TCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATT</canonical_amplicon>
		<polymorphic_amplicon>TCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTYAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36942</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>117521</contig_pos>
        <strand>+</strand>
        <context>CCTCTGCAAA[C/T]GCYTTCTCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAA</left_flank>
        <right_flank>GCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAACACAAATATGTTTGACTGTTCCACATGTGGATTTTTCCAGCCGAGAGTCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTA</canonical>
            <polymorphic>CAAACACAAATATGTTTGACTGTTCCACATGTGGATTTTTCCAGCCGAGAGTCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAAYGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTACACTTCTTCACAGGATTC</pcr_primer_p1>
		<pcr_primer_p2>CTCTCACTGTTGGAGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</canonical_amplicon>
		<polymorphic_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAAYGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36943</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>117524</contig_pos>
        <strand>+</strand>
        <context>CTGCAAAYGC[C/T]TTCTCATTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGC</left_flank>
        <right_flank>TTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACAAATATGTTTGACTGTTCCACATGTGGATTTTTCCAGCCGAGAGTCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTACGA</canonical>
            <polymorphic>ACACAAATATGTTTGACTGTTCCACATGTGGATTTTTCCAGCCGAGAGTCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCYTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTACACTTCTTCACAGGATTC</pcr_primer_p1>
		<pcr_primer_p2>CTCTCACTGTTGGAGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</canonical_amplicon>
		<polymorphic_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCYTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36944</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>117536</contig_pos>
        <strand>+</strand>
        <context>TCTCATTGCA[A/G]ACYCSCCART</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCA</left_flank>
        <right_flank>ACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGACTGTTCCACATGTGGATTTTTCCAGCCGAGAGTCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTACGAGTGGGGTGAACT</canonical>
            <polymorphic>TTGACTGTTCCACATGTGGATTTTTCCAGCCGAGAGTCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCARACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTACGAGTGGGGTGAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTACACTTCTTCACAGGATTC</pcr_primer_p1>
		<pcr_primer_p2>CTCTCACTGTTGGAGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</canonical_amplicon>
		<polymorphic_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCARACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36945</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>117539</contig_pos>
        <strand>+</strand>
        <context>CATTGCARAC[C/T]CSCCARTGAC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAAC</left_flank>
        <right_flank>CTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTGTTCCACATGTGGATTTTTCCAGCCGAGAGTCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTACGAGTGGGGTGAACTAGA</canonical>
            <polymorphic>ACTGTTCCACATGTGGATTTTTCCAGCCGAGAGTCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACYCTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTACGAGTGGGGTGAACTAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>172 133 98 75 74 74 57 50 45 30 26 25 24 22 19 15 12 9 8 7 6 6 5 5 3</canonical_bands>
                <polymorphic_bands>172 133 107 98 75 74 74 45 30 26 25 24 22 19 15 12 9 8 7 6 6 5 5 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTACACTTCTTCACAGGATTC</pcr_primer_p1>
		<pcr_primer_p2>CTCTCACTGTTGGAGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</canonical_amplicon>
		<polymorphic_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACYCTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36946</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>117541</contig_pos>
        <strand>+</strand>
        <context>TTGCARACYC[C/G]CCARTGACTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACAC</left_flank>
        <right_flank>CCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTCCACATGTGGATTTTTCCAGCCGAGAGTCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTACGAGTGGGGTGAACTAGAGG</canonical>
            <polymorphic>TGTTCCACATGTGGATTTTTCCAGCCGAGAGTCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACSCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTACGAGTGGGGTGAACTAGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTACACTTCTTCACAGGATTC</pcr_primer_p1>
		<pcr_primer_p2>CTCTCACTGTTGGAGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</canonical_amplicon>
		<polymorphic_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACSCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36947</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>117545</contig_pos>
        <strand>+</strand>
        <context>ARACYCSCCA[A/G]TGACTCGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCA</left_flank>
        <right_flank>TGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACATGTGGATTTTTCCAGCCGAGAGTCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTACGAGTGGGGTGAACTAGAGGAAAA</canonical>
            <polymorphic>CCACATGTGGATTTTTCCAGCCGAGAGTCCAATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCARTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTACGAGTGGGGTGAACTAGAGGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTACACTTCTTCACAGGATTC</pcr_primer_p1>
		<pcr_primer_p2>CTCTCACTGTTGGAGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</canonical_amplicon>
		<polymorphic_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCARTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36948</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>117575</contig_pos>
        <strand>+</strand>
        <context>TGCATGAACA[A/C]CSWCYARYTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACA</left_flank>
        <right_flank>CATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTACGAGTGGGGTGAACTAGAGGAAAAGAACTCACTGATTGAATTGCCAAGTGGAGC</canonical>
            <polymorphic>AATCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACAMCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTACGAGTGGGGTGAACTAGAGGAAAAGAACTCACTGATTGAATTGCCAAGTGGAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTACACTTCTTCACAGGATTC</pcr_primer_p1>
		<pcr_primer_p2>CTCTCACTGTTGGAGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</canonical_amplicon>
		<polymorphic_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACAMCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36949</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>117577</contig_pos>
        <strand>+</strand>
        <context>CATGAACAMC[C/G]WCYARYTGMT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATC</left_flank>
        <right_flank>TCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTACGAGTGGGGTGAACTAGAGGAAAAGAACTCACTGATTGAATTGCCAAGTGGAGCGT</canonical>
            <polymorphic>TCACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCSTCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTACGAGTGGGGTGAACTAGAGGAAAAGAACTCACTGATTGAATTGCCAAGTGGAGCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTACACTTCTTCACAGGATTC</pcr_primer_p1>
		<pcr_primer_p2>CTCTCACTGTTGGAGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</canonical_amplicon>
		<polymorphic_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCSTCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36950</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>117578</contig_pos>
        <strand>+</strand>
        <context>ATGAACAMCS[A/T]CYARYTGMTY</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCA</left_flank>
        <right_flank>CCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTACGAGTGGGGTGAACTAGAGGAAAAGAACTCACTGATTGAATTGCCAAGTGGAGCGTA</canonical>
            <polymorphic>CACATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCAWCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTACGAGTGGGGTGAACTAGAGGAAAAGAACTCACTGATTGAATTGCCAAGTGGAGCGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTACACTTCTTCACAGGATTC</pcr_primer_p1>
		<pcr_primer_p2>CTCTCACTGTTGGAGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</canonical_amplicon>
		<polymorphic_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCAWCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36951</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>117580</contig_pos>
        <strand>+</strand>
        <context>GAACAMCSWC[C/T]ARYTGMTYTK</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATC</left_flank>
        <right_flank>AACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTACGAGTGGGGTGAACTAGAGGAAAAGAACTCACTGATTGAATTGCCAAGTGGAGCGTACA</canonical>
            <polymorphic>CATTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCYAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTACGAGTGGGGTGAACTAGAGGAAAAGAACTCACTGATTGAATTGCCAAGTGGAGCGTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTACACTTCTTCACAGGATTC</pcr_primer_p1>
		<pcr_primer_p2>CTCTCACTGTTGGAGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</canonical_amplicon>
		<polymorphic_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCYAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36952</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>117582</contig_pos>
        <strand>+</strand>
        <context>ACAMCSWCYA[A/G]YTGMTYTKCR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCA</left_flank>
        <right_flank>CTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTACGAGTGGGGTGAACTAGAGGAAAAGAACTCACTGATTGAATTGCCAAGTGGAGCGTACACA</canonical>
            <polymorphic>TTTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCARCTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTACGAGTGGGGTGAACTAGAGGAAAAGAACTCACTGATTGAATTGCCAAGTGGAGCGTACACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTACACTTCTTCACAGGATTC</pcr_primer_p1>
		<pcr_primer_p2>CTCTCACTGTTGGAGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</canonical_amplicon>
		<polymorphic_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCARCTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36953</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>117583</contig_pos>
        <strand>+</strand>
        <context>CAMCSWCYAR[C/T]TGMTYTKCRA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAA</left_flank>
        <right_flank>TGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTACGAGTGGGGTGAACTAGAGGAAAAGAACTCACTGATTGAATTGCCAAGTGGAGCGTACACAG</canonical>
            <polymorphic>TTACATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAAYTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTACGAGTGGGGTGAACTAGAGGAAAAGAACTCACTGATTGAATTGCCAAGTGGAGCGTACACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTACACTTCTTCACAGGATTC</pcr_primer_p1>
		<pcr_primer_p2>CTCTCACTGTTGGAGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</canonical_amplicon>
		<polymorphic_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAAYTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36954</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>117586</contig_pos>
        <strand>+</strand>
        <context>CSWCYARYTG[A/C]TYTKCRAGTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTG</left_flank>
        <right_flank>TTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTACGAGTGGGGTGAACTAGAGGAAAAGAACTCACTGATTGAATTGCCAAGTGGAGCGTACACAGCAT</canonical>
            <polymorphic>CATTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGMTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTACGAGTGGGGTGAACTAGAGGAAAAGAACTCACTGATTGAATTGCCAAGTGGAGCGTACACAGCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTACACTTCTTCACAGGATTC</pcr_primer_p1>
		<pcr_primer_p2>CTCTCACTGTTGGAGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</canonical_amplicon>
		<polymorphic_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGMTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36955</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>117588</contig_pos>
        <strand>+</strand>
        <context>WCYARYTGMT[C/T]TKCRAGTGRT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCT</left_flank>
        <right_flank>TGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTACGAGTGGGGTGAACTAGAGGAAAAGAACTCACTGATTGAATTGCCAAGTGGAGCGTACACAGCATTA</canonical>
            <polymorphic>TTTCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTYTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTACGAGTGGGGTGAACTAGAGGAAAAGAACTCACTGATTGAATTGCCAAGTGGAGCGTACACAGCATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTACACTTCTTCACAGGATTC</pcr_primer_p1>
		<pcr_primer_p2>CTCTCACTGTTGGAGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</canonical_amplicon>
		<polymorphic_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTYTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36956</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>117590</contig_pos>
        <strand>+</strand>
        <context>YARYTGMTYT[G/T]CRAGTGRTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTT</left_flank>
        <right_flank>CAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTACGAGTGGGGTGAACTAGAGGAAAAGAACTCACTGATTGAATTGCCAAGTGGAGCGTACACAGCATTAGT</canonical>
            <polymorphic>TCAGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTKCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTACGAGTGGGGTGAACTAGAGGAAAAGAACTCACTGATTGAATTGCCAAGTGGAGCGTACACAGCATTAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>426 340 160 33 24 17</canonical_bands>
                <polymorphic_bands>426 340 184 33 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTACACTTCTTCACAGGATTC</pcr_primer_p1>
		<pcr_primer_p2>CTCTCACTGTTGGAGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</canonical_amplicon>
		<polymorphic_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTKCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36957</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>117592</contig_pos>
        <strand>+</strand>
        <context>RYTGMTYTKC[A/G]AGTGRTAACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGC</left_flank>
        <right_flank>AGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTACGAGTGGGGTGAACTAGAGGAAAAGAACTCACTGATTGAATTGCCAAGTGGAGCGTACACAGCATTAGTCG</canonical>
            <polymorphic>AGTTTGGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCRAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTACGAGTGGGGTGAACTAGAGGAAAAGAACTCACTGATTGAATTGCCAAGTGGAGCGTACACAGCATTAGTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>424 342 160 33 24 17</canonical_bands>
                <polymorphic_bands>424 342 184 33 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTACACTTCTTCACAGGATTC</pcr_primer_p1>
		<pcr_primer_p2>CTCTCACTGTTGGAGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</canonical_amplicon>
		<polymorphic_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCRAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36958</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>117597</contig_pos>
        <strand>+</strand>
        <context>TYTKCRAGTG[A/G]TAACGATGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTG</left_flank>
        <right_flank>TAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTACGAGTGGGGTGAACTAGAGGAAAAGAACTCACTGATTGAATTGCCAAGTGGAGCGTACACAGCATTAGTCGTCAGA</canonical>
            <polymorphic>GGAGCCATTGGAAAAAAGTTTGGGCTCAGACTGGGTCAATTTATCTCCCAAACAACACCGTGCCACAGTAAATGCGTTCCCGAAGAGACTTATGGATGTAGTAAGGAACAAAGGCAACCGCGTCGAACAATTTTTATTAATTCATTTTTAGAAAGTATTCAGTAAACTACTGTTAAATTTTCTAGTTGATATGGGTCACTTTGGGAAAGTTACATCAATTTGAATGTGTTGCCATACTTTTGCCGCACCCTGTATATCTTATTGTCTGGTACTGTAAAAAAGGAAAACAAGTATTTTTTAGGTTACAGAATAAAAACTCTTCATTTAAGAAATTCATAGAATACACTAAAGATCTCAAAACATTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGRTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAGTGCCGTTCAACTAAAAATATGTATTCACAAAATATTCATTTGCAGACTTACTGTCTTTCCAAAACTAGGATCATCGTAGTTATTATACTGATTGGTAAGACACGCTGCTTTCTTCTCATACTCCCTTTGATCTGCCCCATCAAACCACGTTTTCAAATTTCCATTTTCGTCAAAATTTATTCCGTTGATATCATATCCATGACCAATTTCATGCCCAATTATGAAACCGATACCAGCAATTTTTGCGTAGTTCGGGAAACTCGTATGGAATAAAGGATCGTCCATCATCGGAGCAAAGACATCTAAAGAGCTACGAGTGGGGTGAACTAGAGGAAAAGAACTCACTGATTGAATTGCCAAGTGGAGCGTACACAGCATTAGTCGTCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>470 198 194 93 31 14</canonical_bands>
                <polymorphic_bands>470 229 194 93 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGTACACTTCTTCACAGGATTC</pcr_primer_p1>
		<pcr_primer_p2>CTCTCACTGTTGGAGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGGTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</canonical_amplicon>
		<polymorphic_amplicon>TTGTACACTTCTTCACAGGATTCATTGGTGATCCAACTGGACAATTGAACGCCTCTGCAAACGCTTTCTCATTGCAAACACTCCATTGACTCGAAAACTGTTCGTTGCATGAACATCATCCAACTGCTTTGCAAGTGRTAACGATGATCGCGGAGCGCACCAATTCCTGTGACAAATCCAATTTTTTGAATGTTCTCCAAGCAACATCCTGCCCGATTTCGTCAGCCATCATTTCTCCAACAGTGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36959</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>118925</contig_pos>
        <strand>+</strand>
        <context>TGAATCCATT[C/T]AGACTTTTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCTTTTGCTTTCCGAATTGCAGCACTTCTTGTCTTCTCATGAATCCATT</left_flank>
        <right_flank>AGACTTTTCGAGCATTTCGATAAAGCTAGATCTGATATCCTCCACCAGTC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATAATGTATTCGATAACCTCAAAACATTGATCACGTCAAAAAATTAAGACGAAATTTTGAGAGTTTTTCCCCAAAGTTTCGAGAAAGATTTTATGTTCAAATCACTGAGGTAGCAGTTTGGTTCTACAAAGACAGTTAAGAATTTCATTAATTGTTCTATGCAACAATTTTCAAAGATTACCACGAAGAAAAACTTTTTCCAAAAGGCGGAAATTCGGGAAAATGATCCCGCCAAACTAAATATGCTGAATTTTAAAATTCAAAAGGAAAATAGTTTTGAAAGACGCTCTTGCTGTATAGTTGGTTTGGGACAACTTGAAAGTTTTCCTTGTTAGAGCGGATATTCTAATACAGATTGCACAGTGGGTTAGTCATTCTCACACTGTAATGTTTGTCCAACGCTCCTGGTTGCTCCAATTCGTCTGGATACGAAATCGTCTTTTTCATGGCTTTTGCTTTCCGAATTGCAGCACTTCTTGTCTTCTCATGAATCCATTCAGACTTTTCGAGCATTTCGATAAAGCTAGATCTGATATCCTCCACCAGTCTATCTACATCCTTCAAAGCACCCTTGTCAAAATGATTTCGAATAAAAACTCTAAGAGAAGGAAGTGGGAGGAAGTGAGCAACTATCTGAAAATAGTCAAGCAATTTTTAAACATAATATAATTTTTTACCCTTTCACATTTTGTATCAGTTGTAGGTTTGAACCTTAGAGAGTTTGAAACATATTTGTAAACCAAGTAGTTTGCAGTTATTCTTTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGT</canonical>
            <polymorphic>ATATAATGTATTCGATAACCTCAAAACATTGATCACGTCAAAAAATTAAGACGAAATTTTGAGAGTTTTTCCCCAAAGTTTCGAGAAAGATTTTATGTTCAAATCACTGAGGTAGCAGTTTGGTTCTACAAAGACAGTTAAGAATTTCATTAATTGTTCTATGCAACAATTTTCAAAGATTACCACGAAGAAAAACTTTTTCCAAAAGGCGGAAATTCGGGAAAATGATCCCGCCAAACTAAATATGCTGAATTTTAAAATTCAAAAGGAAAATAGTTTTGAAAGACGCTCTTGCTGTATAGTTGGTTTGGGACAACTTGAAAGTTTTCCTTGTTAGAGCGGATATTCTAATACAGATTGCACAGTGGGTTAGTCATTCTCACACTGTAATGTTTGTCCAACGCTCCTGGTTGCTCCAATTCGTCTGGATACGAAATCGTCTTTTTCATGGCTTTTGCTTTCCGAATTGCAGCACTTCTTGTCTTCTCATGAATCCATTYAGACTTTTCGAGCATTTCGATAAAGCTAGATCTGATATCCTCCACCAGTCTATCTACATCCTTCAAAGCACCCTTGTCAAAATGATTTCGAATAAAAACTCTAAGAGAAGGAAGTGGGAGGAAGTGAGCAACTATCTGAAAATAGTCAAGCAATTTTTAAACATAATATAATTTTTTACCCTTTCACATTTTGTATCAGTTGTAGGTTTGAACCTTAGAGAGTTTGAAACATATTTGTAAACCAAGTAGTTTGCAGTTATTCTTTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>505 324 171</canonical_bands>
                <polymorphic_bands>676 324</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>463 200 163 104 38 32</canonical_bands>
                <polymorphic_bands>463 200 163 104 70</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGTTAGTCATTCTCACACTGTA</pcr_primer_p1>
		<pcr_primer_p2>CCACTTCCTTCTCTTAGAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGGTTAGTCATTCTCACACTGTAATGTTTGTCCAACGCTCCTGGTTGCTCCAATTCGTCTGGATACGAAATCGTCTTTTTCATGGCTTTTGCTTTCCGAATTGCAGCACTTCTTGTCTTCTCATGAATCCATTCAGACTTTTCGAGCATTTCGATAAAGCTAGATCTGATATCCTCCACCAGTCTATCTACATCCTTCAAAGCACCCTTGTCAAAATGATTTCGAATAAAAACTCTAAGAGAAGGAAGTGG</canonical_amplicon>
		<polymorphic_amplicon>GGGTTAGTCATTCTCACACTGTAATGTTTGTCCAACGCTCCTGGTTGCTCCAATTCGTCTGGATACGAAATCGTCTTTTTCATGGCTTTTGCTTTCCGAATTGCAGCACTTCTTGTCTTCTCATGAATCCATTYAGACTTTTCGAGCATTTCGATAAAGCTAGATCTGATATCCTCCACCAGTCTATCTACATCCTTCAAAGCACCCTTGTCAAAATGATTTCGAATAAAAACTCTAAGAGAAGGAAGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36960</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>119106</contig_pos>
        <strand>+</strand>
        <context>ATTTTTTACC[A/C]TTTCACATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACTATCTGAAAATAGTCAAGCAATTTTTAAACATAATATAATTTTTTACC</left_flank>
        <right_flank>TTTCACATTTTGTATCAGTTGTAGGTTTGAACCTTAGAGAGTTTGAAACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCACGAAGAAAAACTTTTTCCAAAAGGCGGAAATTCGGGAAAATGATCCCGCCAAACTAAATATGCTGAATTTTAAAATTCAAAAGGAAAATAGTTTTGAAAGACGCTCTTGCTGTATAGTTGGTTTGGGACAACTTGAAAGTTTTCCTTGTTAGAGCGGATATTCTAATACAGATTGCACAGTGGGTTAGTCATTCTCACACTGTAATGTTTGTCCAACGCTCCTGGTTGCTCCAATTCGTCTGGATACGAAATCGTCTTTTTCATGGCTTTTGCTTTCCGAATTGCAGCACTTCTTGTCTTCTCATGAATCCATTCAGACTTTTCGAGCATTTCGATAAAGCTAGATCTGATATCCTCCACCAGTCTATCTACATCCTTCAAAGCACCCTTGTCAAAATGATTTCGAATAAAAACTCTAAGAGAAGGAAGTGGGAGGAAGTGAGCAACTATCTGAAAATAGTCAAGCAATTTTTAAACATAATATAATTTTTTACCCTTTCACATTTTGTATCAGTTGTAGGTTTGAACCTTAGAGAGTTTGAAACATATTTGTAAACCAAGTAGTTTGCAGTTATTCTTTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAGACTTAACAATCTGAGAATTTATTTATGAATATAAGTTGACTTGAAAAAGCTTACATCTTGCAGTGCGTGACTGAAATCAATAATTTCTTTCACTCTATCATCCAGTTGTGACTGATCCCGAAACGCGGCTGATCCCAAAACCAATGATAAGGTCTGTAAAAGTTGTAAAAA</canonical>
            <polymorphic>ACCACGAAGAAAAACTTTTTCCAAAAGGCGGAAATTCGGGAAAATGATCCCGCCAAACTAAATATGCTGAATTTTAAAATTCAAAAGGAAAATAGTTTTGAAAGACGCTCTTGCTGTATAGTTGGTTTGGGACAACTTGAAAGTTTTCCTTGTTAGAGCGGATATTCTAATACAGATTGCACAGTGGGTTAGTCATTCTCACACTGTAATGTTTGTCCAACGCTCCTGGTTGCTCCAATTCGTCTGGATACGAAATCGTCTTTTTCATGGCTTTTGCTTTCCGAATTGCAGCACTTCTTGTCTTCTCATGAATCCATTCAGACTTTTCGAGCATTTCGATAAAGCTAGATCTGATATCCTCCACCAGTCTATCTACATCCTTCAAAGCACCCTTGTCAAAATGATTTCGAATAAAAACTCTAAGAGAAGGAAGTGGGAGGAAGTGAGCAACTATCTGAAAATAGTCAAGCAATTTTTAAACATAATATAATTTTTTACCMTTTCACATTTTGTATCAGTTGTAGGTTTGAACCTTAGAGAGTTTGAAACATATTTGTAAACCAAGTAGTTTGCAGTTATTCTTTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAGACTTAACAATCTGAGAATTTATTTATGAATATAAGTTGACTTGAAAAAGCTTACATCTTGCAGTGCGTGACTGAAATCAATAATTTCTTTCACTCTATCATCCAGTTGTGACTGATCCCGAAACGCGGCTGATCCCAAAACCAATGATAAGGTCTGTAAAAGTTGTAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCCTCCACCAGTCTATCTACA</pcr_primer_p1>
		<pcr_primer_p2>GTGAGCTTGTTTATAAGGACAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATCCTCCACCAGTCTATCTACATCCTTCAAAGCACCCTTGTCAAAATGATTTCGAATAAAAACTCTAAGAGAAGGAAGTGGGAGGAAGTGAGCAACTATCTGAAAATAGTCAAGCAATTTTTAAACATAATATAATTTTTTACCCTTTCACATTTTGTATCAGTTGTAGGTTTGAACCTTAGAGAGTTTGAAACATATTTGTAAACCAAGTAGTTTGCAGTTATTCTTTTGTCCTTATAAACAAGCTCAC</canonical_amplicon>
		<polymorphic_amplicon>TATCCTCCACCAGTCTATCTACATCCTTCAAAGCACCCTTGTCAAAATGATTTCGAATAAAAACTCTAAGAGAAGGAAGTGGGAGGAAGTGAGCAACTATCTGAAAATAGTCAAGCAATTTTTAAACATAATATAATTTTTTACCMTTTCACATTTTGTATCAGTTGTAGGTTTGAACCTTAGAGAGTTTGAAACATATTTGTAAACCAAGTAGTTTGCAGTTATTCTTTTGTCCTTATAAACAAGCTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36961</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>119121</contig_pos>
        <strand>+</strand>
        <context>ACATTTTGTA[A/T]CAGTTGYAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAAGCAATTTTTAAACATAATATAATTTTTTACCCTTTCACATTTTGTA</left_flank>
        <right_flank>CAGTTGTAGGTTTGAACCTTAGAGAGTTTGAAACATATTTGTAAACCAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCCAAAAGGCGGAAATTCGGGAAAATGATCCCGCCAAACTAAATATGCTGAATTTTAAAATTCAAAAGGAAAATAGTTTTGAAAGACGCTCTTGCTGTATAGTTGGTTTGGGACAACTTGAAAGTTTTCCTTGTTAGAGCGGATATTCTAATACAGATTGCACAGTGGGTTAGTCATTCTCACACTGTAATGTTTGTCCAACGCTCCTGGTTGCTCCAATTCGTCTGGATACGAAATCGTCTTTTTCATGGCTTTTGCTTTCCGAATTGCAGCACTTCTTGTCTTCTCATGAATCCATTCAGACTTTTCGAGCATTTCGATAAAGCTAGATCTGATATCCTCCACCAGTCTATCTACATCCTTCAAAGCACCCTTGTCAAAATGATTTCGAATAAAAACTCTAAGAGAAGGAAGTGGGAGGAAGTGAGCAACTATCTGAAAATAGTCAAGCAATTTTTAAACATAATATAATTTTTTACCCTTTCACATTTTGTATCAGTTGTAGGTTTGAACCTTAGAGAGTTTGAAACATATTTGTAAACCAAGTAGTTTGCAGTTATTCTTTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAGACTTAACAATCTGAGAATTTATTTATGAATATAAGTTGACTTGAAAAAGCTTACATCTTGCAGTGCGTGACTGAAATCAATAATTTCTTTCACTCTATCATCCAGTTGTGACTGATCCCGAAACGCGGCTGATCCCAAAACCAATGATAAGGTCTGTAAAAGTTGTAAAAAGTATTGGATGCGCAG</canonical>
            <polymorphic>TTTTTCCAAAAGGCGGAAATTCGGGAAAATGATCCCGCCAAACTAAATATGCTGAATTTTAAAATTCAAAAGGAAAATAGTTTTGAAAGACGCTCTTGCTGTATAGTTGGTTTGGGACAACTTGAAAGTTTTCCTTGTTAGAGCGGATATTCTAATACAGATTGCACAGTGGGTTAGTCATTCTCACACTGTAATGTTTGTCCAACGCTCCTGGTTGCTCCAATTCGTCTGGATACGAAATCGTCTTTTTCATGGCTTTTGCTTTCCGAATTGCAGCACTTCTTGTCTTCTCATGAATCCATTCAGACTTTTCGAGCATTTCGATAAAGCTAGATCTGATATCCTCCACCAGTCTATCTACATCCTTCAAAGCACCCTTGTCAAAATGATTTCGAATAAAAACTCTAAGAGAAGGAAGTGGGAGGAAGTGAGCAACTATCTGAAAATAGTCAAGCAATTTTTAAACATAATATAATTTTTTACCCTTTCACATTTTGTAWCAGTTGTAGGTTTGAACCTTAGAGAGTTTGAAACATATTTGTAAACCAAGTAGTTTGCAGTTATTCTTTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAGACTTAACAATCTGAGAATTTATTTATGAATATAAGTTGACTTGAAAAAGCTTACATCTTGCAGTGCGTGACTGAAATCAATAATTTCTTTCACTCTATCATCCAGTTGTGACTGATCCCGAAACGCGGCTGATCCCAAAACCAATGATAAGGTCTGTAAAAGTTGTAAAAAGTATTGGATGCGCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCCTCCACCAGTCTATCTACA</pcr_primer_p1>
		<pcr_primer_p2>GTGAGCTTGTTTATAAGGACAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATCCTCCACCAGTCTATCTACATCCTTCAAAGCACCCTTGTCAAAATGATTTCGAATAAAAACTCTAAGAGAAGGAAGTGGGAGGAAGTGAGCAACTATCTGAAAATAGTCAAGCAATTTTTAAACATAATATAATTTTTTACCCTTTCACATTTTGTATCAGTTGTAGGTTTGAACCTTAGAGAGTTTGAAACATATTTGTAAACCAAGTAGTTTGCAGTTATTCTTTTGTCCTTATAAACAAGCTCAC</canonical_amplicon>
		<polymorphic_amplicon>TATCCTCCACCAGTCTATCTACATCCTTCAAAGCACCCTTGTCAAAATGATTTCGAATAAAAACTCTAAGAGAAGGAAGTGGGAGGAAGTGAGCAACTATCTGAAAATAGTCAAGCAATTTTTAAACATAATATAATTTTTTACCCTTTCACATTTTGTAWCAGTTGTAGGTTTGAACCTTAGAGAGTTTGAAACATATTTGTAAACCAAGTAGTTTGCAGTTATTCTTTTGTCCTTATAAACAAGCTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36962</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>119128</contig_pos>
        <strand>+</strand>
        <context>GTAWCAGTTG[C/T]AGGTTTGAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTTAAACATAATATAATTTTTTACCCTTTCACATTTTGTATCAGTTG</left_flank>
        <right_flank>AGGTTTGAACCTTAGAGAGTTTGAAACATATTTGTAAACCAAGTAGTTTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGGCGGAAATTCGGGAAAATGATCCCGCCAAACTAAATATGCTGAATTTTAAAATTCAAAAGGAAAATAGTTTTGAAAGACGCTCTTGCTGTATAGTTGGTTTGGGACAACTTGAAAGTTTTCCTTGTTAGAGCGGATATTCTAATACAGATTGCACAGTGGGTTAGTCATTCTCACACTGTAATGTTTGTCCAACGCTCCTGGTTGCTCCAATTCGTCTGGATACGAAATCGTCTTTTTCATGGCTTTTGCTTTCCGAATTGCAGCACTTCTTGTCTTCTCATGAATCCATTCAGACTTTTCGAGCATTTCGATAAAGCTAGATCTGATATCCTCCACCAGTCTATCTACATCCTTCAAAGCACCCTTGTCAAAATGATTTCGAATAAAAACTCTAAGAGAAGGAAGTGGGAGGAAGTGAGCAACTATCTGAAAATAGTCAAGCAATTTTTAAACATAATATAATTTTTTACCCTTTCACATTTTGTATCAGTTGTAGGTTTGAACCTTAGAGAGTTTGAAACATATTTGTAAACCAAGTAGTTTGCAGTTATTCTTTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAGACTTAACAATCTGAGAATTTATTTATGAATATAAGTTGACTTGAAAAAGCTTACATCTTGCAGTGCGTGACTGAAATCAATAATTTCTTTCACTCTATCATCCAGTTGTGACTGATCCCGAAACGCGGCTGATCCCAAAACCAATGATAAGGTCTGTAAAAGTTGTAAAAAGTATTGGATGCGCAGTTTGAAT</canonical>
            <polymorphic>AAAAGGCGGAAATTCGGGAAAATGATCCCGCCAAACTAAATATGCTGAATTTTAAAATTCAAAAGGAAAATAGTTTTGAAAGACGCTCTTGCTGTATAGTTGGTTTGGGACAACTTGAAAGTTTTCCTTGTTAGAGCGGATATTCTAATACAGATTGCACAGTGGGTTAGTCATTCTCACACTGTAATGTTTGTCCAACGCTCCTGGTTGCTCCAATTCGTCTGGATACGAAATCGTCTTTTTCATGGCTTTTGCTTTCCGAATTGCAGCACTTCTTGTCTTCTCATGAATCCATTCAGACTTTTCGAGCATTTCGATAAAGCTAGATCTGATATCCTCCACCAGTCTATCTACATCCTTCAAAGCACCCTTGTCAAAATGATTTCGAATAAAAACTCTAAGAGAAGGAAGTGGGAGGAAGTGAGCAACTATCTGAAAATAGTCAAGCAATTTTTAAACATAATATAATTTTTTACCCTTTCACATTTTGTATCAGTTGYAGGTTTGAACCTTAGAGAGTTTGAAACATATTTGTAAACCAAGTAGTTTGCAGTTATTCTTTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAGACTTAACAATCTGAGAATTTATTTATGAATATAAGTTGACTTGAAAAAGCTTACATCTTGCAGTGCGTGACTGAAATCAATAATTTCTTTCACTCTATCATCCAGTTGTGACTGATCCCGAAACGCGGCTGATCCCAAAACCAATGATAAGGTCTGTAAAAGTTGTAAAAAGTATTGGATGCGCAGTTTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCCTCCACCAGTCTATCTACA</pcr_primer_p1>
		<pcr_primer_p2>GTGAGCTTGTTTATAAGGACAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATCCTCCACCAGTCTATCTACATCCTTCAAAGCACCCTTGTCAAAATGATTTCGAATAAAAACTCTAAGAGAAGGAAGTGGGAGGAAGTGAGCAACTATCTGAAAATAGTCAAGCAATTTTTAAACATAATATAATTTTTTACCCTTTCACATTTTGTATCAGTTGTAGGTTTGAACCTTAGAGAGTTTGAAACATATTTGTAAACCAAGTAGTTTGCAGTTATTCTTTTGTCCTTATAAACAAGCTCAC</canonical_amplicon>
		<polymorphic_amplicon>TATCCTCCACCAGTCTATCTACATCCTTCAAAGCACCCTTGTCAAAATGATTTCGAATAAAAACTCTAAGAGAAGGAAGTGGGAGGAAGTGAGCAACTATCTGAAAATAGTCAAGCAATTTTTAAACATAATATAATTTTTTACCCTTTCACATTTTGTATCAGTTGYAGGTTTGAACCTTAGAGAGTTTGAAACATATTTGTAAACCAAGTAGTTTGCAGTTATTCTTTTGTCCTTATAAACAAGCTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36963</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>119294</contig_pos>
        <strand>+</strand>
        <context>CCATCCGTAT[A/G]TTTTATTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTAT</left_flank>
        <right_flank>TTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGTCATTCTCACACTGTAATGTTTGTCCAACGCTCCTGGTTGCTCCAATTCGTCTGGATACGAAATCGTCTTTTTCATGGCTTTTGCTTTCCGAATTGCAGCACTTCTTGTCTTCTCATGAATCCATTCAGACTTTTCGAGCATTTCGATAAAGCTAGATCTGATATCCTCCACCAGTCTATCTACATCCTTCAAAGCACCCTTGTCAAAATGATTTCGAATAAAAACTCTAAGAGAAGGAAGTGGGAGGAAGTGAGCAACTATCTGAAAATAGTCAAGCAATTTTTAAACATAATATAATTTTTTACCCTTTCACATTTTGTATCAGTTGTAGGTTTGAACCTTAGAGAGTTTGAAACATATTTGTAAACCAAGTAGTTTGCAGTTATTCTTTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAGACTTAACAATCTGAGAATTTATTTATGAATATAAGTTGACTTGAAAAAGCTTACATCTTGCAGTGCGTGACTGAAATCAATAATTTCTTTCACTCTATCATCCAGTTGTGACTGATCCCGAAACGCGGCTGATCCCAAAACCAATGATAAGGTCTGTAAAAGTTGTAAAAAGTATTGGATGCGCAGTTTGAATTTTGACGATTTGAGCCGAAAAAAACGATATTTTTATATGAAATACGAAAAGCCTGGTCGGACACCCGCTGACGTGAGAATGAGGCTTCTTCAATCGTACAACAATGAGCAAAAAAGCGCGCATTCTCACTTATAATTTGGCCTAAGCCTATTTTTTGGGGGCCGGG</canonical>
            <polymorphic>TTAGTCATTCTCACACTGTAATGTTTGTCCAACGCTCCTGGTTGCTCCAATTCGTCTGGATACGAAATCGTCTTTTTCATGGCTTTTGCTTTCCGAATTGCAGCACTTCTTGTCTTCTCATGAATCCATTCAGACTTTTCGAGCATTTCGATAAAGCTAGATCTGATATCCTCCACCAGTCTATCTACATCCTTCAAAGCACCCTTGTCAAAATGATTTCGAATAAAAACTCTAAGAGAAGGAAGTGGGAGGAAGTGAGCAACTATCTGAAAATAGTCAAGCAATTTTTAAACATAATATAATTTTTTACCCTTTCACATTTTGTATCAGTTGTAGGTTTGAACCTTAGAGAGTTTGAAACATATTTGTAAACCAAGTAGTTTGCAGTTATTCTTTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATRTTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAGACTTAACAATCTGAGAATTTATTTATGAATATAAGTTGACTTGAAAAAGCTTACATCTTGCAGTGCGTGACTGAAATCAATAATTTCTTTCACTCTATCATCCAGTTGTGACTGATCCCGAAACGCGGCTGATCCCAAAACCAATGATAAGGTCTGTAAAAGTTGTAAAAAGTATTGGATGCGCAGTTTGAATTTTGACGATTTGAGCCGAAAAAAACGATATTTTTATATGAAATACGAAAAGCCTGGTCGGACACCCGCTGACGTGAGAATGAGGCTTCTTCAATCGTACAACAATGAGCAAAAAAGCGCGCATTCTCACTTATAATTTGGCCTAAGCCTATTTTTTGGGGGCCGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTCCTTATAAACAAGCTCAC</pcr_primer_p1>
		<pcr_primer_p2>CTACACCTCAACCAGAGAATCTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAG</canonical_amplicon>
		<polymorphic_amplicon>TTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATRTTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36964</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>119325</contig_pos>
        <strand>+</strand>
        <context>CAACTTCTTG[A/G]TCCTTTTGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTG</left_flank>
        <right_flank>TCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGCTCCTGGTTGCTCCAATTCGTCTGGATACGAAATCGTCTTTTTCATGGCTTTTGCTTTCCGAATTGCAGCACTTCTTGTCTTCTCATGAATCCATTCAGACTTTTCGAGCATTTCGATAAAGCTAGATCTGATATCCTCCACCAGTCTATCTACATCCTTCAAAGCACCCTTGTCAAAATGATTTCGAATAAAAACTCTAAGAGAAGGAAGTGGGAGGAAGTGAGCAACTATCTGAAAATAGTCAAGCAATTTTTAAACATAATATAATTTTTTACCCTTTCACATTTTGTATCAGTTGTAGGTTTGAACCTTAGAGAGTTTGAAACATATTTGTAAACCAAGTAGTTTGCAGTTATTCTTTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAGACTTAACAATCTGAGAATTTATTTATGAATATAAGTTGACTTGAAAAAGCTTACATCTTGCAGTGCGTGACTGAAATCAATAATTTCTTTCACTCTATCATCCAGTTGTGACTGATCCCGAAACGCGGCTGATCCCAAAACCAATGATAAGGTCTGTAAAAGTTGTAAAAAGTATTGGATGCGCAGTTTGAATTTTGACGATTTGAGCCGAAAAAAACGATATTTTTATATGAAATACGAAAAGCCTGGTCGGACACCCGCTGACGTGAGAATGAGGCTTCTTCAATCGTACAACAATGAGCAAAAAAGCGCGCATTCTCACTTATAATTTGGCCTAAGCCTATTTTTTGGGGGCCGGGTGTTTGTTTTAGGTGAAGATGTAAGAAAAGA</canonical>
            <polymorphic>ACGCTCCTGGTTGCTCCAATTCGTCTGGATACGAAATCGTCTTTTTCATGGCTTTTGCTTTCCGAATTGCAGCACTTCTTGTCTTCTCATGAATCCATTCAGACTTTTCGAGCATTTCGATAAAGCTAGATCTGATATCCTCCACCAGTCTATCTACATCCTTCAAAGCACCCTTGTCAAAATGATTTCGAATAAAAACTCTAAGAGAAGGAAGTGGGAGGAAGTGAGCAACTATCTGAAAATAGTCAAGCAATTTTTAAACATAATATAATTTTTTACCCTTTCACATTTTGTATCAGTTGTAGGTTTGAACCTTAGAGAGTTTGAAACATATTTGTAAACCAAGTAGTTTGCAGTTATTCTTTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGRTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAGACTTAACAATCTGAGAATTTATTTATGAATATAAGTTGACTTGAAAAAGCTTACATCTTGCAGTGCGTGACTGAAATCAATAATTTCTTTCACTCTATCATCCAGTTGTGACTGATCCCGAAACGCGGCTGATCCCAAAACCAATGATAAGGTCTGTAAAAGTTGTAAAAAGTATTGGATGCGCAGTTTGAATTTTGACGATTTGAGCCGAAAAAAACGATATTTTTATATGAAATACGAAAAGCCTGGTCGGACACCCGCTGACGTGAGAATGAGGCTTCTTCAATCGTACAACAATGAGCAAAAAAGCGCGCATTCTCACTTATAATTTGGCCTAAGCCTATTTTTTGGGGGCCGGGTGTTTGTTTTAGGTGAAGATGTAAGAAAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>499 463 38</canonical_bands>
                <polymorphic_bands>962 38</polymorphic_bands>
            </assay>
            <assay>
                <site>CCANNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>BstXI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGTCCTTATAAACAAGCTCAC</pcr_primer_p1>
		<pcr_primer_p2>CTACACCTCAACCAGAGAATCTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAG</canonical_amplicon>
		<polymorphic_amplicon>TTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGRTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36965</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>119345</contig_pos>
        <strand>+</strand>
        <context>TAGAAGTGAC[G/T]YGATCAAATA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGAC</left_flank>
        <right_flank>TGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTCTGGATACGAAATCGTCTTTTTCATGGCTTTTGCTTTCCGAATTGCAGCACTTCTTGTCTTCTCATGAATCCATTCAGACTTTTCGAGCATTTCGATAAAGCTAGATCTGATATCCTCCACCAGTCTATCTACATCCTTCAAAGCACCCTTGTCAAAATGATTTCGAATAAAAACTCTAAGAGAAGGAAGTGGGAGGAAGTGAGCAACTATCTGAAAATAGTCAAGCAATTTTTAAACATAATATAATTTTTTACCCTTTCACATTTTGTATCAGTTGTAGGTTTGAACCTTAGAGAGTTTGAAACATATTTGTAAACCAAGTAGTTTGCAGTTATTCTTTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAGACTTAACAATCTGAGAATTTATTTATGAATATAAGTTGACTTGAAAAAGCTTACATCTTGCAGTGCGTGACTGAAATCAATAATTTCTTTCACTCTATCATCCAGTTGTGACTGATCCCGAAACGCGGCTGATCCCAAAACCAATGATAAGGTCTGTAAAAGTTGTAAAAAGTATTGGATGCGCAGTTTGAATTTTGACGATTTGAGCCGAAAAAAACGATATTTTTATATGAAATACGAAAAGCCTGGTCGGACACCCGCTGACGTGAGAATGAGGCTTCTTCAATCGTACAACAATGAGCAAAAAAGCGCGCATTCTCACTTATAATTTGGCCTAAGCCTATTTTTTGGGGGCCGGGTGTTTGTTTTAGGTGAAGATGTAAGAAAAGATCGCATAAAAATCAAAAACT</canonical>
            <polymorphic>TCGTCTGGATACGAAATCGTCTTTTTCATGGCTTTTGCTTTCCGAATTGCAGCACTTCTTGTCTTCTCATGAATCCATTCAGACTTTTCGAGCATTTCGATAAAGCTAGATCTGATATCCTCCACCAGTCTATCTACATCCTTCAAAGCACCCTTGTCAAAATGATTTCGAATAAAAACTCTAAGAGAAGGAAGTGGGAGGAAGTGAGCAACTATCTGAAAATAGTCAAGCAATTTTTAAACATAATATAATTTTTTACCCTTTCACATTTTGTATCAGTTGTAGGTTTGAACCTTAGAGAGTTTGAAACATATTTGTAAACCAAGTAGTTTGCAGTTATTCTTTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACKTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAGACTTAACAATCTGAGAATTTATTTATGAATATAAGTTGACTTGAAAAAGCTTACATCTTGCAGTGCGTGACTGAAATCAATAATTTCTTTCACTCTATCATCCAGTTGTGACTGATCCCGAAACGCGGCTGATCCCAAAACCAATGATAAGGTCTGTAAAAGTTGTAAAAAGTATTGGATGCGCAGTTTGAATTTTGACGATTTGAGCCGAAAAAAACGATATTTTTATATGAAATACGAAAAGCCTGGTCGGACACCCGCTGACGTGAGAATGAGGCTTCTTCAATCGTACAACAATGAGCAAAAAAGCGCGCATTCTCACTTATAATTTGGCCTAAGCCTATTTTTTGGGGGCCGGGTGTTTGTTTTAGGTGAAGATGTAAGAAAAGATCGCATAAAAATCAAAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTCCTTATAAACAAGCTCAC</pcr_primer_p1>
		<pcr_primer_p2>CTACACCTCAACCAGAGAATCTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAG</canonical_amplicon>
		<polymorphic_amplicon>TTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACKTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36966</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>119346</contig_pos>
        <strand>+</strand>
        <context>AGAAGTGACK[C/T]GATCAAATAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACT</left_flank>
        <right_flank>GATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTCTGGATACGAAATCGTCTTTTTCATGGCTTTTGCTTTCCGAATTGCAGCACTTCTTGTCTTCTCATGAATCCATTCAGACTTTTCGAGCATTTCGATAAAGCTAGATCTGATATCCTCCACCAGTCTATCTACATCCTTCAAAGCACCCTTGTCAAAATGATTTCGAATAAAAACTCTAAGAGAAGGAAGTGGGAGGAAGTGAGCAACTATCTGAAAATAGTCAAGCAATTTTTAAACATAATATAATTTTTTACCCTTTCACATTTTGTATCAGTTGTAGGTTTGAACCTTAGAGAGTTTGAAACATATTTGTAAACCAAGTAGTTTGCAGTTATTCTTTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAGACTTAACAATCTGAGAATTTATTTATGAATATAAGTTGACTTGAAAAAGCTTACATCTTGCAGTGCGTGACTGAAATCAATAATTTCTTTCACTCTATCATCCAGTTGTGACTGATCCCGAAACGCGGCTGATCCCAAAACCAATGATAAGGTCTGTAAAAGTTGTAAAAAGTATTGGATGCGCAGTTTGAATTTTGACGATTTGAGCCGAAAAAAACGATATTTTTATATGAAATACGAAAAGCCTGGTCGGACACCCGCTGACGTGAGAATGAGGCTTCTTCAATCGTACAACAATGAGCAAAAAAGCGCGCATTCTCACTTATAATTTGGCCTAAGCCTATTTTTTGGGGGCCGGGTGTTTGTTTTAGGTGAAGATGTAAGAAAAGATCGCATAAAAATCAAAAACTT</canonical>
            <polymorphic>CGTCTGGATACGAAATCGTCTTTTTCATGGCTTTTGCTTTCCGAATTGCAGCACTTCTTGTCTTCTCATGAATCCATTCAGACTTTTCGAGCATTTCGATAAAGCTAGATCTGATATCCTCCACCAGTCTATCTACATCCTTCAAAGCACCCTTGTCAAAATGATTTCGAATAAAAACTCTAAGAGAAGGAAGTGGGAGGAAGTGAGCAACTATCTGAAAATAGTCAAGCAATTTTTAAACATAATATAATTTTTTACCCTTTCACATTTTGTATCAGTTGTAGGTTTGAACCTTAGAGAGTTTGAAACATATTTGTAAACCAAGTAGTTTGCAGTTATTCTTTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTYGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAGACTTAACAATCTGAGAATTTATTTATGAATATAAGTTGACTTGAAAAAGCTTACATCTTGCAGTGCGTGACTGAAATCAATAATTTCTTTCACTCTATCATCCAGTTGTGACTGATCCCGAAACGCGGCTGATCCCAAAACCAATGATAAGGTCTGTAAAAGTTGTAAAAAGTATTGGATGCGCAGTTTGAATTTTGACGATTTGAGCCGAAAAAAACGATATTTTTATATGAAATACGAAAAGCCTGGTCGGACACCCGCTGACGTGAGAATGAGGCTTCTTCAATCGTACAACAATGAGCAAAAAAGCGCGCATTCTCACTTATAATTTGGCCTAAGCCTATTTTTTGGGGGCCGGGTGTTTGTTTTAGGTGAAGATGTAAGAAAAGATCGCATAAAAATCAAAAACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGTCCTTATAAACAAGCTCAC</pcr_primer_p1>
		<pcr_primer_p2>CTACACCTCAACCAGAGAATCTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAG</canonical_amplicon>
		<polymorphic_amplicon>TTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTYGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36967</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>119358</contig_pos>
        <strand>+</strand>
        <context>ATCAAATAAT[C/G]AAAGACAGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAAT</left_flank>
        <right_flank>AAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCGTCTTTTTCATGGCTTTTGCTTTCCGAATTGCAGCACTTCTTGTCTTCTCATGAATCCATTCAGACTTTTCGAGCATTTCGATAAAGCTAGATCTGATATCCTCCACCAGTCTATCTACATCCTTCAAAGCACCCTTGTCAAAATGATTTCGAATAAAAACTCTAAGAGAAGGAAGTGGGAGGAAGTGAGCAACTATCTGAAAATAGTCAAGCAATTTTTAAACATAATATAATTTTTTACCCTTTCACATTTTGTATCAGTTGTAGGTTTGAACCTTAGAGAGTTTGAAACATATTTGTAAACCAAGTAGTTTGCAGTTATTCTTTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAGACTTAACAATCTGAGAATTTATTTATGAATATAAGTTGACTTGAAAAAGCTTACATCTTGCAGTGCGTGACTGAAATCAATAATTTCTTTCACTCTATCATCCAGTTGTGACTGATCCCGAAACGCGGCTGATCCCAAAACCAATGATAAGGTCTGTAAAAGTTGTAAAAAGTATTGGATGCGCAGTTTGAATTTTGACGATTTGAGCCGAAAAAAACGATATTTTTATATGAAATACGAAAAGCCTGGTCGGACACCCGCTGACGTGAGAATGAGGCTTCTTCAATCGTACAACAATGAGCAAAAAAGCGCGCATTCTCACTTATAATTTGGCCTAAGCCTATTTTTTGGGGGCCGGGTGTTTGTTTTAGGTGAAGATGTAAGAAAAGATCGCATAAAAATCAAAAACTTTAGTGGCACCCC</canonical>
            <polymorphic>AAATCGTCTTTTTCATGGCTTTTGCTTTCCGAATTGCAGCACTTCTTGTCTTCTCATGAATCCATTCAGACTTTTCGAGCATTTCGATAAAGCTAGATCTGATATCCTCCACCAGTCTATCTACATCCTTCAAAGCACCCTTGTCAAAATGATTTCGAATAAAAACTCTAAGAGAAGGAAGTGGGAGGAAGTGAGCAACTATCTGAAAATAGTCAAGCAATTTTTAAACATAATATAATTTTTTACCCTTTCACATTTTGTATCAGTTGTAGGTTTGAACCTTAGAGAGTTTGAAACATATTTGTAAACCAAGTAGTTTGCAGTTATTCTTTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATSAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAGACTTAACAATCTGAGAATTTATTTATGAATATAAGTTGACTTGAAAAAGCTTACATCTTGCAGTGCGTGACTGAAATCAATAATTTCTTTCACTCTATCATCCAGTTGTGACTGATCCCGAAACGCGGCTGATCCCAAAACCAATGATAAGGTCTGTAAAAGTTGTAAAAAGTATTGGATGCGCAGTTTGAATTTTGACGATTTGAGCCGAAAAAAACGATATTTTTATATGAAATACGAAAAGCCTGGTCGGACACCCGCTGACGTGAGAATGAGGCTTCTTCAATCGTACAACAATGAGCAAAAAAGCGCGCATTCTCACTTATAATTTGGCCTAAGCCTATTTTTTGGGGGCCGGGTGTTTGTTTTAGGTGAAGATGTAAGAAAAGATCGCATAAAAATCAAAAACTTTAGTGGCACCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTCCTTATAAACAAGCTCAC</pcr_primer_p1>
		<pcr_primer_p2>CTACACCTCAACCAGAGAATCTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAG</canonical_amplicon>
		<polymorphic_amplicon>TTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATSAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36968</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>119372</contig_pos>
        <strand>+</strand>
        <context>GACAGGAAGA[A/G]CAGCATTCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGA</left_flank>
        <right_flank>CAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGCTTTTGCTTTCCGAATTGCAGCACTTCTTGTCTTCTCATGAATCCATTCAGACTTTTCGAGCATTTCGATAAAGCTAGATCTGATATCCTCCACCAGTCTATCTACATCCTTCAAAGCACCCTTGTCAAAATGATTTCGAATAAAAACTCTAAGAGAAGGAAGTGGGAGGAAGTGAGCAACTATCTGAAAATAGTCAAGCAATTTTTAAACATAATATAATTTTTTACCCTTTCACATTTTGTATCAGTTGTAGGTTTGAACCTTAGAGAGTTTGAAACATATTTGTAAACCAAGTAGTTTGCAGTTATTCTTTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAGACTTAACAATCTGAGAATTTATTTATGAATATAAGTTGACTTGAAAAAGCTTACATCTTGCAGTGCGTGACTGAAATCAATAATTTCTTTCACTCTATCATCCAGTTGTGACTGATCCCGAAACGCGGCTGATCCCAAAACCAATGATAAGGTCTGTAAAAGTTGTAAAAAGTATTGGATGCGCAGTTTGAATTTTGACGATTTGAGCCGAAAAAAACGATATTTTTATATGAAATACGAAAAGCCTGGTCGGACACCCGCTGACGTGAGAATGAGGCTTCTTCAATCGTACAACAATGAGCAAAAAAGCGCGCATTCTCACTTATAATTTGGCCTAAGCCTATTTTTTGGGGGCCGGGTGTTTGTTTTAGGTGAAGATGTAAGAAAAGATCGCATAAAAATCAAAAACTTTAGTGGCACCCCTCAACCCCATAGCG</canonical>
            <polymorphic>ATGGCTTTTGCTTTCCGAATTGCAGCACTTCTTGTCTTCTCATGAATCCATTCAGACTTTTCGAGCATTTCGATAAAGCTAGATCTGATATCCTCCACCAGTCTATCTACATCCTTCAAAGCACCCTTGTCAAAATGATTTCGAATAAAAACTCTAAGAGAAGGAAGTGGGAGGAAGTGAGCAACTATCTGAAAATAGTCAAGCAATTTTTAAACATAATATAATTTTTTACCCTTTCACATTTTGTATCAGTTGTAGGTTTGAACCTTAGAGAGTTTGAAACATATTTGTAAACCAAGTAGTTTGCAGTTATTCTTTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGARCAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAGACTTAACAATCTGAGAATTTATTTATGAATATAAGTTGACTTGAAAAAGCTTACATCTTGCAGTGCGTGACTGAAATCAATAATTTCTTTCACTCTATCATCCAGTTGTGACTGATCCCGAAACGCGGCTGATCCCAAAACCAATGATAAGGTCTGTAAAAGTTGTAAAAAGTATTGGATGCGCAGTTTGAATTTTGACGATTTGAGCCGAAAAAAACGATATTTTTATATGAAATACGAAAAGCCTGGTCGGACACCCGCTGACGTGAGAATGAGGCTTCTTCAATCGTACAACAATGAGCAAAAAAGCGCGCATTCTCACTTATAATTTGGCCTAAGCCTATTTTTTGGGGGCCGGGTGTTTGTTTTAGGTGAAGATGTAAGAAAAGATCGCATAAAAATCAAAAACTTTAGTGGCACCCCTCAACCCCATAGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTCCTTATAAACAAGCTCAC</pcr_primer_p1>
		<pcr_primer_p2>CTACACCTCAACCAGAGAATCTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAG</canonical_amplicon>
		<polymorphic_amplicon>TTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGARCAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36969</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>119439</contig_pos>
        <strand>+</strand>
        <context>GGTGTAGACT[C/T]AWCAATCTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAGACT</left_flank>
        <right_flank>AACAATCTGAGAATTTATTTATGAATATAAGTTGACTTGAAAAAGCTTAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGATAAAGCTAGATCTGATATCCTCCACCAGTCTATCTACATCCTTCAAAGCACCCTTGTCAAAATGATTTCGAATAAAAACTCTAAGAGAAGGAAGTGGGAGGAAGTGAGCAACTATCTGAAAATAGTCAAGCAATTTTTAAACATAATATAATTTTTTACCCTTTCACATTTTGTATCAGTTGTAGGTTTGAACCTTAGAGAGTTTGAAACATATTTGTAAACCAAGTAGTTTGCAGTTATTCTTTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAGACTTAACAATCTGAGAATTTATTTATGAATATAAGTTGACTTGAAAAAGCTTACATCTTGCAGTGCGTGACTGAAATCAATAATTTCTTTCACTCTATCATCCAGTTGTGACTGATCCCGAAACGCGGCTGATCCCAAAACCAATGATAAGGTCTGTAAAAGTTGTAAAAAGTATTGGATGCGCAGTTTGAATTTTGACGATTTGAGCCGAAAAAAACGATATTTTTATATGAAATACGAAAAGCCTGGTCGGACACCCGCTGACGTGAGAATGAGGCTTCTTCAATCGTACAACAATGAGCAAAAAAGCGCGCATTCTCACTTATAATTTGGCCTAAGCCTATTTTTTGGGGGCCGGGTGTTTGTTTTAGGTGAAGATGTAAGAAAAGATCGCATAAAAATCAAAAACTTTAGTGGCACCCCTCAACCCCATAGCGCCGATTTTTTTGGAACCAGGAAACCAAACCGCACGTCATTCATGATGAAGTTTTTCTCACATTTTTT</canonical>
            <polymorphic>TTTCGATAAAGCTAGATCTGATATCCTCCACCAGTCTATCTACATCCTTCAAAGCACCCTTGTCAAAATGATTTCGAATAAAAACTCTAAGAGAAGGAAGTGGGAGGAAGTGAGCAACTATCTGAAAATAGTCAAGCAATTTTTAAACATAATATAATTTTTTACCCTTTCACATTTTGTATCAGTTGTAGGTTTGAACCTTAGAGAGTTTGAAACATATTTGTAAACCAAGTAGTTTGCAGTTATTCTTTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAGACTYAACAATCTGAGAATTTATTTATGAATATAAGTTGACTTGAAAAAGCTTACATCTTGCAGTGCGTGACTGAAATCAATAATTTCTTTCACTCTATCATCCAGTTGTGACTGATCCCGAAACGCGGCTGATCCCAAAACCAATGATAAGGTCTGTAAAAGTTGTAAAAAGTATTGGATGCGCAGTTTGAATTTTGACGATTTGAGCCGAAAAAAACGATATTTTTATATGAAATACGAAAAGCCTGGTCGGACACCCGCTGACGTGAGAATGAGGCTTCTTCAATCGTACAACAATGAGCAAAAAAGCGCGCATTCTCACTTATAATTTGGCCTAAGCCTATTTTTTGGGGGCCGGGTGTTTGTTTTAGGTGAAGATGTAAGAAAAGATCGCATAAAAATCAAAAACTTTAGTGGCACCCCTCAACCCCATAGCGCCGATTTTTTTGGAACCAGGAAACCAAACCGCACGTCATTCATGATGAAGTTTTTCTCACATTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>501 314 143 42</canonical_bands>
                <polymorphic_bands>543 314 143</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTACTCTTCGGACTTTTG</pcr_primer_p1>
		<pcr_primer_p2>CAAGATGTAAGCTTTTTCAAGTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAGACTTAACAATCTGAGAATTTATTTATGAATATAAGTTGACTTGAAAAAGCTTACATCTTG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAGACTYAACAATCTGAGAATTTATTTATGAATATAAGTTGACTTGAAAAAGCTTACATCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36970</snp_id>
        <super_contig>c011701050.Contig3</super_contig>
        <contig_pos>119441</contig_pos>
        <strand>+</strand>
        <context>TGTAGACTYA[A/T]CAATCTGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAGACTTA</left_flank>
        <right_flank>CAATCTGAGAATTTATTTATGAATATAAGTTGACTTGAAAAAGCTTACAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGATAAAGCTAGATCTGATATCCTCCACCAGTCTATCTACATCCTTCAAAGCACCCTTGTCAAAATGATTTCGAATAAAAACTCTAAGAGAAGGAAGTGGGAGGAAGTGAGCAACTATCTGAAAATAGTCAAGCAATTTTTAAACATAATATAATTTTTTACCCTTTCACATTTTGTATCAGTTGTAGGTTTGAACCTTAGAGAGTTTGAAACATATTTGTAAACCAAGTAGTTTGCAGTTATTCTTTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAGACTTAACAATCTGAGAATTTATTTATGAATATAAGTTGACTTGAAAAAGCTTACATCTTGCAGTGCGTGACTGAAATCAATAATTTCTTTCACTCTATCATCCAGTTGTGACTGATCCCGAAACGCGGCTGATCCCAAAACCAATGATAAGGTCTGTAAAAGTTGTAAAAAGTATTGGATGCGCAGTTTGAATTTTGACGATTTGAGCCGAAAAAAACGATATTTTTATATGAAATACGAAAAGCCTGGTCGGACACCCGCTGACGTGAGAATGAGGCTTCTTCAATCGTACAACAATGAGCAAAAAAGCGCGCATTCTCACTTATAATTTGGCCTAAGCCTATTTTTTGGGGGCCGGGTGTTTGTTTTAGGTGAAGATGTAAGAAAAGATCGCATAAAAATCAAAAACTTTAGTGGCACCCCTCAACCCCATAGCGCCGATTTTTTTGGAACCAGGAAACCAAACCGCACGTCATTCATGATGAAGTTTTTCTCACATTTTTTAC</canonical>
            <polymorphic>TCGATAAAGCTAGATCTGATATCCTCCACCAGTCTATCTACATCCTTCAAAGCACCCTTGTCAAAATGATTTCGAATAAAAACTCTAAGAGAAGGAAGTGGGAGGAAGTGAGCAACTATCTGAAAATAGTCAAGCAATTTTTAAACATAATATAATTTTTTACCCTTTCACATTTTGTATCAGTTGTAGGTTTGAACCTTAGAGAGTTTGAAACATATTTGTAAACCAAGTAGTTTGCAGTTATTCTTTTGTCCTTATAAACAAGCTCACTGATCTGGAAAATTGTTTTGTGCACTAATAATGACTAAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAGACTTAWCAATCTGAGAATTTATTTATGAATATAAGTTGACTTGAAAAAGCTTACATCTTGCAGTGCGTGACTGAAATCAATAATTTCTTTCACTCTATCATCCAGTTGTGACTGATCCCGAAACGCGGCTGATCCCAAAACCAATGATAAGGTCTGTAAAAGTTGTAAAAAGTATTGGATGCGCAGTTTGAATTTTGACGATTTGAGCCGAAAAAAACGATATTTTTATATGAAATACGAAAAGCCTGGTCGGACACCCGCTGACGTGAGAATGAGGCTTCTTCAATCGTACAACAATGAGCAAAAAAGCGCGCATTCTCACTTATAATTTGGCCTAAGCCTATTTTTTGGGGGCCGGGTGTTTGTTTTAGGTGAAGATGTAAGAAAAGATCGCATAAAAATCAAAAACTTTAGTGGCACCCCTCAACCCCATAGCGCCGATTTTTTTGGAACCAGGAAACCAAACCGCACGTCATTCATGATGAAGTTTTTCTCACATTTTTTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>503 314 141 42</canonical_bands>
                <polymorphic_bands>545 314 141</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTACTCTTCGGACTTTTG</pcr_primer_p1>
		<pcr_primer_p2>CAAGATGTAAGCTTTTTCAAGTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAGACTTAACAATCTGAGAATTTATTTATGAATATAAGTTGACTTGAAAAAGCTTACATCTTG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTACTCTTCGGACTTTTGAAAGAAAGCTGTTCCATCCGTATATTTTATTTTTGACTTTTCCCCAACTTCTTGGTCCTTTTGTTAGAAGTGACTTGATCAAATAATCAAAGACAGGAAGAACAGCATTCAATTGTTTGAAGTTGTTAAACATGATTTCATCTAGATTCTCTGGTTGAGGTGTAGACTTAWCAATCTGAGAATTTATTTATGAATATAAGTTGACTTGAAAAAGCTTACATCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36971</snp_id>
        <super_contig>c011701313.Contig1</super_contig>
        <contig_pos>10326</contig_pos>
        <strand>-</strand>
        <context>TTATTGGTTG[A/G]TCCATTTCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTGATTTTATCGGATCTATTATCAATTTTTTCATTTTTATTATTGGTTG</left_flank>
        <right_flank>TCCATTTCTATTTGCTAGATTCCCCCCTACTAACTCATTACATGAACTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCGTCTGGTTATGGCGAAAGTAATGAACTAATACCAATGATTAAAAGTCTTACCCAAAATATCGCACATCTATTTTCTAAGGAAAGAGTGGCTGTTGAGGTAATAGATCAGTTGAATTCAAAACTAGATAAGCTTGAATGTGAAAATTCTATACTCACCGCCAAAATTGAGCAATTGAAATCTCAAAATGAAGCTTTGAAGAACAAAAGTTCTGAAGTAGACTATGGTGTGATCATGAAAAAAGCGCAAGCGGAATTTGAGAAAAAACAAAAACATGCTCTTAACACTTTGAGTTCCTCTTCAGAAAACGTGAAGGATTCGCTATATAGAAGAATTGTCTTTAATTGAAAAAAATTATTTTTCCATCTCCTTTATAAATAATGTGAATGAATTAGATGGTGGATGAACATTCATTTCACTAAGTTGAGTTTTGTTCTGATCTACCTCCTTGATTTTATCGGATCTATTATCAATTTTTTCATTTTTATTATTGGTTGTTCCATTTCTATTTGCTAGATTCCCCCCTACTAACTCATTACATGAACTTGTCACTGCAAACATATTAACTGCTTGAACGAATCTTCCATCATAATCCCTTTTTCTATTATCATCACCTTGACTTGTTGAATATTTTCTAATAGCCTTGTTAAGAGTAGACTTTGGAACATTGTATTTTGTACACCATCCTCGAGGTCCTTCTTTTACACCTCCTACCTTTTCATATGCCTCGTAGATGTTTCTCAGATATTGATTAGACATTTATCTAACATATTTTTCTGAATTTTTTTTTTCGGCATGTTTTTTTTCTCAGAGTCGAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCATCATCGCAGCCTCGCCGTGAAAAATACTACTGGAAAAACTAGAAAAAGCAAACCGAAAAAAATTCAGAAAAATATGTTAGATAAATGTCT</canonical>
            <polymorphic>TATCGTCTGGTTATGGCGAAAGTAATGAACTAATACCAATGATTAAAAGTCTTACCCAAAATATCGCACATCTATTTTCTAAGGAAAGAGTGGCTGTTGAGGTAATAGATCAGTTGAATTCAAAACTAGATAAGCTTGAATGTGAAAATTCTATACTCACCGCCAAAATTGAGCAATTGAAATCTCAAAATGAAGCTTTGAAGAACAAAAGTTCTGAAGTAGACTATGGTGTGATCATGAAAAAAGCGCAAGCGGAATTTGAGAAAAAACAAAAACATGCTCTTAACACTTTGAGTTCCTCTTCAGAAAACGTGAAGGATTCGCTATATAGAAGAATTGTCTTTAATTGAAAAAAATTATTTTTCCATCTCCTTTATAAATAATGTGAATGAATTAGATGGTGGATGAACATTCATTTCACTAAGTTGAGTTTTGTTCTGATCTACCTCCTTGATTTTATCGGATCTATTATCAATTTTTTCATTTTTATTATTGGTTGRTCCATTTCTATTTGCTAGATTCCCCCCTACTAACTCATTACATGAACTTGTCACTGCAAACATATTAACTGCTTGAACGAATCTTCCATCATAATCCCTTTTTCTATTATCATCACCTTGACTTGTTGAATATTTTCTAATAGCCTTGTTAAGAGTAGACTTTGGAACATTGTATTTTGTACACCATCCTCGAGGTCCTTCTTTTACACCTCCTACCTTTTCATATGCCTCGTAGATGTTTCTCAGATATTGATTAGACATTTATCTAACATATTTTTCTGAATTTTTTTTTTCGGCATGTTTTTTTTCTCAGAGTCGAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCATCATCGCAGCCTCGCCGTGAAAAATACTACTGGAAAAACTAGAAAAAGCAAACCGAAAAAAATTCAGAAAAATATGTTAGATAAATGTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTTTGTTCTGATCTACCTCCT</pcr_primer_p1>
		<pcr_primer_p2>CAAAATACAATGTTCCAAAGTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGTTTTGTTCTGATCTACCTCCTTGATTTTATCGGATCTATTATCAATTTTTTCATTTTTATTATTGGTTGTTCCATTTCTATTTGCTAGATTCCCCCCTACTAACTCATTACATGAACTTGTCACTGCAAACATATTAACTGCTTGAACGAATCTTCCATCATAATCCCTTTTTCTATTATCATCACCTTGACTTGTTGAATATTTTCTAATAGCCTTGTTAAGAGTAGACTTTGGAACATTGTATTTTG</canonical_amplicon>
		<polymorphic_amplicon>AGTTTTGTTCTGATCTACCTCCTTGATTTTATCGGATCTATTATCAATTTTTTCATTTTTATTATTGGTTGRTCCATTTCTATTTGCTAGATTCCCCCCTACTAACTCATTACATGAACTTGTCACTGCAAACATATTAACTGCTTGAACGAATCTTCCATCATAATCCCTTTTTCTATTATCATCACCTTGACTTGTTGAATATTTTCTAATAGCCTTGTTAAGAGTAGACTTTGGAACATTGTATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36972</snp_id>
        <super_contig>c011701313.Contig1</super_contig>
        <contig_pos>10404</contig_pos>
        <strand>-</strand>
        <context>ACTGCTTGAA[A/G]GAATCTTCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACTAACTCATTACATGAACTTGTCACTGCAAACATATTAACTGCTTGAA</left_flank>
        <right_flank>GAATCTTCCATCATAATCCCTTTTTCTATTATCATCACCTTGACTTGTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAAGGAAAGAGTGGCTGTTGAGGTAATAGATCAGTTGAATTCAAAACTAGATAAGCTTGAATGTGAAAATTCTATACTCACCGCCAAAATTGAGCAATTGAAATCTCAAAATGAAGCTTTGAAGAACAAAAGTTCTGAAGTAGACTATGGTGTGATCATGAAAAAAGCGCAAGCGGAATTTGAGAAAAAACAAAAACATGCTCTTAACACTTTGAGTTCCTCTTCAGAAAACGTGAAGGATTCGCTATATAGAAGAATTGTCTTTAATTGAAAAAAATTATTTTTCCATCTCCTTTATAAATAATGTGAATGAATTAGATGGTGGATGAACATTCATTTCACTAAGTTGAGTTTTGTTCTGATCTACCTCCTTGATTTTATCGGATCTATTATCAATTTTTTCATTTTTATTATTGGTTGTTCCATTTCTATTTGCTAGATTCCCCCCTACTAACTCATTACATGAACTTGTCACTGCAAACATATTAACTGCTTGAACGAATCTTCCATCATAATCCCTTTTTCTATTATCATCACCTTGACTTGTTGAATATTTTCTAATAGCCTTGTTAAGAGTAGACTTTGGAACATTGTATTTTGTACACCATCCTCGAGGTCCTTCTTTTACACCTCCTACCTTTTCATATGCCTCGTAGATGTTTCTCAGATATTGATTAGACATTTATCTAACATATTTTTCTGAATTTTTTTTTTCGGCATGTTTTTTTTCTCAGAGTCGAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCATCATCGCAGCCTCGCCGTGAAAAATACTACTGGAAAAACTAGAAAAAGCAAACCGAAAAAAATTCAGAAAAATATGTTAGATAAATGTCTAATCAATATCTGAGAAACATCTACGAGGCATATGAAAAGGTAGGAGGTGTAAAAGAAGGACCTCGAGGATGGTGTACA</canonical>
            <polymorphic>CTAAGGAAAGAGTGGCTGTTGAGGTAATAGATCAGTTGAATTCAAAACTAGATAAGCTTGAATGTGAAAATTCTATACTCACCGCCAAAATTGAGCAATTGAAATCTCAAAATGAAGCTTTGAAGAACAAAAGTTCTGAAGTAGACTATGGTGTGATCATGAAAAAAGCGCAAGCGGAATTTGAGAAAAAACAAAAACATGCTCTTAACACTTTGAGTTCCTCTTCAGAAAACGTGAAGGATTCGCTATATAGAAGAATTGTCTTTAATTGAAAAAAATTATTTTTCCATCTCCTTTATAAATAATGTGAATGAATTAGATGGTGGATGAACATTCATTTCACTAAGTTGAGTTTTGTTCTGATCTACCTCCTTGATTTTATCGGATCTATTATCAATTTTTTCATTTTTATTATTGGTTGTTCCATTTCTATTTGCTAGATTCCCCCCTACTAACTCATTACATGAACTTGTCACTGCAAACATATTAACTGCTTGAARGAATCTTCCATCATAATCCCTTTTTCTATTATCATCACCTTGACTTGTTGAATATTTTCTAATAGCCTTGTTAAGAGTAGACTTTGGAACATTGTATTTTGTACACCATCCTCGAGGTCCTTCTTTTACACCTCCTACCTTTTCATATGCCTCGTAGATGTTTCTCAGATATTGATTAGACATTTATCTAACATATTTTTCTGAATTTTTTTTTTCGGCATGTTTTTTTTCTCAGAGTCGAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCATCATCGCAGCCTCGCCGTGAAAAATACTACTGGAAAAACTAGAAAAAGCAAACCGAAAAAAATTCAGAAAAATATGTTAGATAAATGTCTAATCAATATCTGAGAAACATCTACGAGGCATATGAAAAGGTAGGAGGTGTAAAAGAAGGACCTCGAGGATGGTGTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTTTGTTCTGATCTACCTCCT</pcr_primer_p1>
		<pcr_primer_p2>CAAAATACAATGTTCCAAAGTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGTTTTGTTCTGATCTACCTCCTTGATTTTATCGGATCTATTATCAATTTTTTCATTTTTATTATTGGTTGTTCCATTTCTATTTGCTAGATTCCCCCCTACTAACTCATTACATGAACTTGTCACTGCAAACATATTAACTGCTTGAACGAATCTTCCATCATAATCCCTTTTTCTATTATCATCACCTTGACTTGTTGAATATTTTCTAATAGCCTTGTTAAGAGTAGACTTTGGAACATTGTATTTTG</canonical_amplicon>
		<polymorphic_amplicon>AGTTTTGTTCTGATCTACCTCCTTGATTTTATCGGATCTATTATCAATTTTTTCATTTTTATTATTGGTTGTTCCATTTCTATTTGCTAGATTCCCCCCTACTAACTCATTACATGAACTTGTCACTGCAAACATATTAACTGCTTGAARGAATCTTCCATCATAATCCCTTTTTCTATTATCATCACCTTGACTTGTTGAATATTTTCTAATAGCCTTGTTAAGAGTAGACTTTGGAACATTGTATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36973</snp_id>
        <super_contig>c011701313.Contig1</super_contig>
        <contig_pos>10442</contig_pos>
        <strand>-</strand>
        <context>ATTATCATCA[C/G]CTTGACTTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAACTGCTTGAACGAATCTTCCATCATAATCCCTTTTTCTATTATCATCA</left_flank>
        <right_flank>CTTGACTTGTTGAATATTTTCTAATAGCCTTGTTAAGAGTAGACTTTGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTCAAAACTAGATAAGCTTGAATGTGAAAATTCTATACTCACCGCCAAAATTGAGCAATTGAAATCTCAAAATGAAGCTTTGAAGAACAAAAGTTCTGAAGTAGACTATGGTGTGATCATGAAAAAAGCGCAAGCGGAATTTGAGAAAAAACAAAAACATGCTCTTAACACTTTGAGTTCCTCTTCAGAAAACGTGAAGGATTCGCTATATAGAAGAATTGTCTTTAATTGAAAAAAATTATTTTTCCATCTCCTTTATAAATAATGTGAATGAATTAGATGGTGGATGAACATTCATTTCACTAAGTTGAGTTTTGTTCTGATCTACCTCCTTGATTTTATCGGATCTATTATCAATTTTTTCATTTTTATTATTGGTTGTTCCATTTCTATTTGCTAGATTCCCCCCTACTAACTCATTACATGAACTTGTCACTGCAAACATATTAACTGCTTGAACGAATCTTCCATCATAATCCCTTTTTCTATTATCATCACCTTGACTTGTTGAATATTTTCTAATAGCCTTGTTAAGAGTAGACTTTGGAACATTGTATTTTGTACACCATCCTCGAGGTCCTTCTTTTACACCTCCTACCTTTTCATATGCCTCGTAGATGTTTCTCAGATATTGATTAGACATTTATCTAACATATTTTTCTGAATTTTTTTTTTCGGCATGTTTTTTTTCTCAGAGTCGAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCATCATCGCAGCCTCGCCGTGAAAAATACTACTGGAAAAACTAGAAAAAGCAAACCGAAAAAAATTCAGAAAAATATGTTAGATAAATGTCTAATCAATATCTGAGAAACATCTACGAGGCATATGAAAAGGTAGGAGGTGTAAAAGAAGGACCTCGAGGATGGTGTACAAAATACAATGTTCCAAAGTCTACTCTTAACAAGGCTAT</canonical>
            <polymorphic>AATTCAAAACTAGATAAGCTTGAATGTGAAAATTCTATACTCACCGCCAAAATTGAGCAATTGAAATCTCAAAATGAAGCTTTGAAGAACAAAAGTTCTGAAGTAGACTATGGTGTGATCATGAAAAAAGCGCAAGCGGAATTTGAGAAAAAACAAAAACATGCTCTTAACACTTTGAGTTCCTCTTCAGAAAACGTGAAGGATTCGCTATATAGAAGAATTGTCTTTAATTGAAAAAAATTATTTTTCCATCTCCTTTATAAATAATGTGAATGAATTAGATGGTGGATGAACATTCATTTCACTAAGTTGAGTTTTGTTCTGATCTACCTCCTTGATTTTATCGGATCTATTATCAATTTTTTCATTTTTATTATTGGTTGTTCCATTTCTATTTGCTAGATTCCCCCCTACTAACTCATTACATGAACTTGTCACTGCAAACATATTAACTGCTTGAACGAATCTTCCATCATAATCCCTTTTTCTATTATCATCASCTTGACTTGTTGAATATTTTCTAATAGCCTTGTTAAGAGTAGACTTTGGAACATTGTATTTTGTACACCATCCTCGAGGTCCTTCTTTTACACCTCCTACCTTTTCATATGCCTCGTAGATGTTTCTCAGATATTGATTAGACATTTATCTAACATATTTTTCTGAATTTTTTTTTTCGGCATGTTTTTTTTCTCAGAGTCGAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCCTCCCCGCAGCATCATCGCAGCCTCGCCGTGAAAAATACTACTGGAAAAACTAGAAAAAGCAAACCGAAAAAAATTCAGAAAAATATGTTAGATAAATGTCTAATCAATATCTGAGAAACATCTACGAGGCATATGAAAAGGTAGGAGGTGTAAAAGAAGGACCTCGAGGATGGTGTACAAAATACAATGTTCCAAAGTCTACTCTTAACAAGGCTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>221 133 120 73 72 68 62 55 42 28 26 25 25 17 16 15 2</canonical_bands>
                <polymorphic_bands>221 133 130 120 73 72 55 42 28 26 25 25 17 16 15 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTTTGTTCTGATCTACCTCCT</pcr_primer_p1>
		<pcr_primer_p2>CAAAATACAATGTTCCAAAGTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGTTTTGTTCTGATCTACCTCCTTGATTTTATCGGATCTATTATCAATTTTTTCATTTTTATTATTGGTTGTTCCATTTCTATTTGCTAGATTCCCCCCTACTAACTCATTACATGAACTTGTCACTGCAAACATATTAACTGCTTGAACGAATCTTCCATCATAATCCCTTTTTCTATTATCATCACCTTGACTTGTTGAATATTTTCTAATAGCCTTGTTAAGAGTAGACTTTGGAACATTGTATTTTG</canonical_amplicon>
		<polymorphic_amplicon>AGTTTTGTTCTGATCTACCTCCTTGATTTTATCGGATCTATTATCAATTTTTTCATTTTTATTATTGGTTGTTCCATTTCTATTTGCTAGATTCCCCCCTACTAACTCATTACATGAACTTGTCACTGCAAACATATTAACTGCTTGAACGAATCTTCCATCATAATCCCTTTTTCTATTATCATCASCTTGACTTGTTGAATATTTTCTAATAGCCTTGTTAAGAGTAGACTTTGGAACATTGTATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36974</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>72439</contig_pos>
        <strand></strand>
        <context>agaacagaaa[T/C]cttcgcacaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATCGAAGAAGTTATCAAAAGTTGGTCAAATATAAACATGTAGAACAGAAA</left_flank>
        <right_flank>CTTCGCACAATTTTCTGGTTTGGGATAGTTTTTTGTTTTTTTTCCTGAGA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGAAAAAGTATGCCATTGAAATCTTGAAATATCGAGAAAAATCTGGACACAGAACACAGTTCAGCGACAAATTAGAAAACTGGATAAACCAGTGGTTGAGACCTTTCACCTGTTTCGTTTTCATTGATAAGAATAATCTAAATGATTAAGTCTAAAGTTCAAATGTTTGGGTCGAAAGTTTTGTATTTTAGAGAGCTTATAAAAACATTAGTTATGGATATTTGCATTTACAGTATCACGAAAATCATGATACTGTTTTAGTTTTACAAAAATAAATTCCCCTTTAAAGTTAGAGCGAGTTTCAGAGATCCTTGAATTTTTGGGTCCTAGTTAACTTTGTTCCCACAACTTTTTCAGTTTTTGAGATGTTTTTGACATAAACCTGAAGCGCGCTTCAGAAAACCCAGTTTTTTGGGTGTCACAACTTTAAAGGCGCATATCTTAAACATCGAAGAAGTTATCAAAAGTTGGTCAAATATAAACATGTAGAACAGAAATCTTCGCACAATTTTCTGGTTTGGGATAGTTTTTTGTTTTTTTTCCTGAGATATGCGCCTTCCAAGGTGTAGCGGTTTAGAAAACATACTCTTTTAGGTGCCACAACTGTGAAGGCGCATATCTCAAAAATCGAAAAAGTTGTCAAAAATTTGTCAACTGTAAACATGTAGAACATGAGTTTTTACACACTATGTTAGTTGACAAATTTGTGATAACTTTTTTAGTTTCGGAGATATGGGCTTTTTAATTTCGAGCGAGCGCTTCAGAGTAGCTCGCTTTCTCTTATTGAGTGTTTGCTATTTAAAGGCGCATATCTCGAAAACCAAAAAAGCGAGAAATTGTTTTCAAATAAAGAAATATGTAAAATTGTATGTTTTACATCTCTGTAGTTGACACTTTTTGAGTAGCTATGGTAGTTTTGGAGATATGTGCCTTTAAATTTGGCGCTTAGTTTGGATGAAGACTTCTGTAGAAATGATCCGCTAGCTGTGACGCAATCA</canonical>
            <polymorphic>TGTGAAAAAGTATGCCATTGAAATCTTGAAATATCGAGAAAAATCTGGACACAGAACACAGTTCAGCGACAAATTAGAAAACTGGATAAACCAGTGGTTGAGACCTTTCACCTGTTTCGTTTTCATTGATAAGAATAATCTAAATGATTAAGTCTAAAGTTCAAATGTTTGGGTCGAAAGTTTTGTATTTTAGAGAGCTTATAAAAACATTAGTTATGGATATTTGCATTTACAGTATCACGAAAATCATGATACTGTTTTAGTTTTACAAAAATAAATTCCCCTTTAAAGTTAGAGCGAGTTTCAGAGATCCTTGAATTTTTGGGTCCTAGTTAACTTTGTTCCCACAACTTTTTCAGTTTTTGAGATGTTTTTGACATAAACCTGAAGCGCGCTTCAGAAAACCCAGTTTTTTGGGTGTCACAACTTTAAAGGCGCATATCTTAAACATCGAAGAAGTTATCAAAAGTTGGTCAAATATAAACATGTAGAACAGAAAYCTTCGCACAATTTTCTGGTTTGGGATAGTTTTTTGTTTTTTTTCCTGAGATATGCGCCTTCCAAGGTGTAGCGGTTTAGAAAACATACTCTTTTAGGTGCCACAACTGTGAAGGCGCATATCTCAAAAATCGAAAAAGTTGTCAAAAATTTGTCAACTGTAAACATGTAGAACATGAGTTTTTACACACTATGTTAGTTGACAAATTTGTGATAACTTTTTTAGTTTCGGAGATATGGGCTTTTTAATTTCGAGCGAGCGCTTCAGAGTAGCTCGCTTTCTCTTATTGAGTGTTTGCTATTTAAAGGCGCATATCTCGAAAACCAAAAAAGCGAGAAATTGTTTTCAAATAAAGAAATATGTAAAATTGTATGTTTTACATCTCTGTAGTTGACACTTTTTGAGTAGCTATGGTAGTTTTGGAGATATGTGCCTTTAAATTTGGCGCTTAGTTTGGATGAAGACTTCTGTAGAAATGATCCGCTAGCTGTGACGCAATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTAGAGCGAGTTTCAGAGAT</pcr_primer_p1>
		<pcr_primer_p2>ACAGAAGTCTTCATCCAAACTAA</pcr_primer_p2>
		<pcr_amplicon_size>682</pcr_amplicon_size>
		<canonical_amplicon>AAGTTAGAGCGAGTTTCAGAGATCCTTGAATTTTTGGGTCCTAGTTAACTTTGTTCCCACAACTTTTTCAGTTTTTGAGATGTTTTTGACATAAACCTGAAGCGCGCTTCAGAAAACCCAGTTTTTTGGGTGTCACAACTTTAAAGGCGCATATCTTAAACATCGAAGAAGTTATCAAAAGTTGGTCAAATATAAACATGTAGAACAGAAATCTTCGCACAATTTTCTGGTTTGGGATAGTTTTTTGTTTTTTTTCCTGAGATATGCGCCTTCCAAGGTGTAGCGGTTTAGAAAACATACTCTTTTAGGTGCCACAACTGTGAAGGCGCATATCTCAAAAATCGAAAAAGTTGTCAAAAATTTGTCAACTGTAAACATGTAGAACATGAGTTTTTACACACTATGTTAGTTGACAAATTTGTGATAACTTTTTTAGTTTCGGAGATATGGGCTTTTTAATTTCGAGCGAGCGCTTCAGAGTAGCTCGCTTTCTCTTATTGAGTGTTTGCTATTTAAAGGCGCATATCTCGAAAACCAAAAAAGCGAGAAATTGTTTTCAAATAAAGAAATATGTAAAATTGTATGTTTTACATCTCTGTAGTTGACACTTTTTGAGTAGCTATGGTAGTTTTGGAGATATGTGCCTTTAAATTTGGCGCTTAGTTTGGATGAAGACTTCTGT</canonical_amplicon>
		<polymorphic_amplicon>AAGTTAGAGCGAGTTTCAGAGATCCTTGAATTTTTGGGTCCTAGTTAACTTTGTTCCCACAACTTTTTCAGTTTTTGAGATGTTTTTGACATAAACCTGAAGCGCGCTTCAGAAAACCCAGTTTTTTGGGTGTCACAACTTTAAAGGCGCATATCTTAAACATCGAAGAAGTTATCAAAAGTTGGTCAAATATAAACATGTAGAACAGAAAYCTTCGCACAATTTTCTGGTTTGGGATAGTTTTTTGTTTTTTTTCCTGAGATATGCGCCTTCCAAGGTGTAGCGGTTTAGAAAACATACTCTTTTAGGTGCCACAACTGTGAAGGCGCATATCTCAAAAATCGAAAAAGTTGTCAAAAATTTGTCAACTGTAAACATGTAGAACATGAGTTTTTACACACTATGTTAGTTGACAAATTTGTGATAACTTTTTTAGTTTCGGAGATATGGGCTTTTTAATTTCGAGCGAGCGCTTCAGAGTAGCTCGCTTTCTCTTATTGAGTGTTTGCTATTTAAAGGCGCATATCTCGAAAACCAAAAAAGCGAGAAATTGTTTTCAAATAAAGAAATATGTAAAATTGTATGTTTTACATCTCTGTAGTTGACACTTTTTGAGTAGCTATGGTAGTTTTGGAGATATGTGCCTTTAAATTTGGCGCTTAGTTTGGATGAAGACTTCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36975</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>88742</contig_pos>
        <strand>+</strand>
        <context>CCAGGAAATG[A/G]AAAATAATTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGTGGAATGAAGGGTTACTGATCATTGTCTGGATGCGTACCAGGAAATG</left_flank>
        <right_flank>AAAATAATTAAGCGGAGGCTGGGAACAATTATAACGTCATAGAATTGGAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATTCTTTGAACCACATAAATACGTATTCTAGACATTCGGAAGTGAAAGTGCAATTCATGTAGACAAGTCAACGAAAAAAGAAGAAAAGAGTCCGTTTAGGAACCTGGGCGATCTAAAAATAGAAGGATCACCCACTCAAAAAGGACTCCAAAAAGCAACCAAAGTTTTTTTTTTGAATAGAAAAAAGTTGAGGAGGAGAAAAAGGACATTTGGATGAAAAAGCACAATACACAGAAGATTAATGAAACAACGAGAGGAGAGAAACATTGAATGGGTGAAAATGAAGGGGGTGTAAAATGGCTTGCCTACGTAACAAAAAAGGCAAACCGAGTGGAAAACGAGAAATTTTGAGTTTCGGAGATAAATTAATAAATGGAAGGGAAGAAAGGGTATGAAAAAATGAACGGTCAATTGTCGAGAAAAGGGTAAAGAACTAAAGAATTAAAAAGTGGAATGAAGGGTTACTGATCATTGTCTGGATGCGTACCAGGAAATGAAAAATAATTAAGCGGAGGCTGGGAACAATTATAACGTCATAGAATTGGAACTGGGTGGCAAAATGATGTTCAAGAAATACGGTAAATCCTTTATTAGAAAGGAATCCTCTATTAGAAACGGTCCAAGGTACCTTTGCAGGGCTCTTCTAACGTAACACCTATTATAGAAGGACACCCTAACTTTTAACTTTGAGTCGACTTATCTCGGTTCCTGACATGAAAAAGTGGTCAGCTGATAAATTGTTCATCATAATATCACAAACATTTTATCAGTTGACTTATTTTTGATATCTTGAATATGAGACAAGAAAGATTATCTCAATTTAATTTAATTTAATTTGTTTATTGATCAGGTGTAACAAAACATTAGAGGGGTAGACATGAAAGACTCAGAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGTGAAACGGGATAATTTAGATATTGACACAGGAAAAATGTAACCGGTAGAAGAAGAGAAAAGAAAAATAG</canonical>
            <polymorphic>AATATTCTTTGAACCACATAAATACGTATTCTAGACATTCGGAAGTGAAAGTGCAATTCATGTAGACAAGTCAACGAAAAAAGAAGAAAAGAGTCCGTTTAGGAACCTGGGCGATCTAAAAATAGAAGGATCACCCACTCAAAAAGGACTCCAAAAAGCAACCAAAGTTTTTTTTTTGAATAGAAAAAAGTTGAGGAGGAGAAAAAGGACATTTGGATGAAAAAGCACAATACACAGAAGATTAATGAAACAACGAGAGGAGAGAAACATTGAATGGGTGAAAATGAAGGGGGTGTAAAATGGCTTGCCTACGTAACAAAAAAGGCAAACCGAGTGGAAAACGAGAAATTTTGAGTTTCGGAGATAAATTAATAAATGGAAGGGAAGAAAGGGTATGAAAAAATGAACGGTCAATTGTCGAGAAAAGGGTAAAGAACTAAAGAATTAAAAAGTGGAATGAAGGGTTACTGATCATTGTCTGGATGCGTACCAGGAAATGRAAAATAATTAAGCGGAGGCTGGGAACAATTATAACGTCATAGAATTGGAACTGGGTGGCAAAATGATGTTCAAGAAATACGGTAAATCCTTTATTAGAAAGGAATCCTCTATTAGAAACGGTCCAAGGTACCTTTGCAGGGCTCTTCTAACGTAACACCTATTATAGAAGGACACCCTAACTTTTAACTTTGAGTCGACTTATCTCGGTTCCTGACATGAAAAAGTGGTCAGCTGATAAATTGTTCATCATAATATCACAAACATTTTATCAGTTGACTTATTTTTGATATCTTGAATATGAGACAAGAAAGATTATCTCAATTTAATTTAATTTAATTTGTTTATTGATCAGGTGTAACAAAACATTAGAGGGGTAGACATGAAAGACTCAGAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGTGAAACGGGATAATTTAGATATTGACACAGGAAAAATGTAACCGGTAGAAGAAGAGAAAAGAAAAATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTTGAGTTTCGGAGATAAAT</pcr_primer_p1>
		<pcr_primer_p2>TAAAGGATTTACCGTATTTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATTTTGAGTTTCGGAGATAAATTAATAAATGGAAGGGAAGAAAGGGTATGAAAAAATGAACGGTCAATTGTCGAGAAAAGGGTAAAGAACTAAAGAATTAAAAAGTGGAATGAAGGGTTACTGATCATTGTCTGGATGCGTACCAGGAAATGAAAAATAATTAAGCGGAGGCTGGGAACAATTATAACGTCATAGAATTGGAACTGGGTGGCAAAATGATGTTCAAGAAATACGGTAAATCCTTTA</canonical_amplicon>
		<polymorphic_amplicon>AATTTTGAGTTTCGGAGATAAATTAATAAATGGAAGGGAAGAAAGGGTATGAAAAAATGAACGGTCAATTGTCGAGAAAAGGGTAAAGAACTAAAGAATTAAAAAGTGGAATGAAGGGTTACTGATCATTGTCTGGATGCGTACCAGGAAATGRAAAATAATTAAGCGGAGGCTGGGAACAATTATAACGTCATAGAATTGGAACTGGGTGGCAAAATGATGTTCAAGAAATACGGTAAATCCTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36976</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>90069</contig_pos>
        <strand>+</strand>
        <context>CCCTTCTATT[A/G]GAGGGACCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAGGAGGCCCTTCTATTTTTTGGAACCCCTCTATGAAGACCCTTCTATT</left_flank>
        <right_flank>GAGGGACCCTTCTATTAAAAAGGCCCTTTGAATACAGGTTTTACGGTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAGAACATAACATTTGAAAAGATGAATGTAGAATTCTGGAGACTTAGATCTAAAAGACTTTAAAAGTCAATCTTGACAGTGTAGAAGCTATTTTTATAACAGGATTTACGGTTTCAGAAGCCTTTCATTTTTCCGGTCATTTTTCCGAATACTATCATTTGAAAAATCGAGGAACGCTCGTTCAAAATTCATAAAAATTCATCACTTTTACCGAAACTGAGGAAGGTTTTGAGCAGAAAAGAGTGTTTGAACAAATTCTTGTGAAATTCTCAATTTTCCGAAATAATTTCCATTAGAAACGTATAGAAATTTTATATTTTGAACATCATATCTCTGAGGAGGCCCTTCTATTTTTTGGAACCCCTCTATGAAGACCCTTCTATTGGAGGGACCCTTCTATTAAAAAGGCCCTTTGAATACAGGTTTTACGGTATTTTCTTTGATAAGAGAAGTTCTATTAAAATTAACAGCTTTCAATATCTAAAAAATCTAGGCAGAAGGATTCTTGACTAAATACAAATCAAAAAATGGGCGGTGCTAACTGAAATCCTTGTCTTAAAATTGCCATTTTTCTTGTCACGTAGCTCTTATATCCAAAATTAAGGATTTGCGAATTTCAACGATCGAAAAGTGGTTTCAGTTGCAACAAAGGCTTCAGATCAAGTAGAAAAAAAAATGTATTGTTACTATTACTATATAGCAAAATTAGTAATATTTTAATCTTCTGTTTTTTTTGTTGTTATGGATCAAAATATAGAAGCACGCGGTTTCATAGGGTTTCTAACTGCACAACTGTTTTTTCAATGATTCGTCTTTTATCAGTTTAAAATGAGACAAACTTGGATAAACAAAGAACGACAAATAGTATATTACAATGGTCTTGAA</canonical>
            <polymorphic>TATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAGAACATAACATTTGAAAAGATGAATGTAGAATTCTGGAGACTTAGATCTAAAAGACTTTAAAAGTCAATCTTGACAGTGTAGAAGCTATTTTTATAACAGGATTTACGGTTTCAGAAGCCTTTCATTTTTCCGGTCATTTTTCCGAATACTATCATTTGAAAAATCGAGGAACGCTCGTTCAAAATTCATAAAAATTCATCACTTTTACCGAAACTGAGGAAGGTTTTGAGCAGAAAAGAGTGTTTGAACAAATTCTTGTGAAATTCTCAATTTTCCGAAATAATTTCCATTAGAAACGTATAGAAATTTTATATTTTGAACATCATATCTCTGAGGAGGCCCTTCTATTTTTTGGAACCCCTCTATGAAGACCCTTCTATTRGAGGGACCCTTCTATTAAAAAGGCCCTTTGAATACAGGTTTTACGGTATTTTCTTTGATAAGAGAAGTTCTATTAAAATTAACAGCTTTCAATATCTAAAAAATCTAGGCAGAAGGATTCTTGACTAAATACAAATCAAAAAATGGGCGGTGCTAACTGAAATCCTTGTCTTAAAATTGCCATTTTTCTTGTCACGTAGCTCTTATATCCAAAATTAAGGATTTGCGAATTTCAACGATCGAAAAGTGGTTTCAGTTGCAACAAAGGCTTCAGATCAAGTAGAAAAAAAAATGTATTGTTACTATTACTATATAGCAAAATTAGTAATATTTTAATCTTCTGTTTTTTTTGTTGTTATGGATCAAAATATAGAAGCACGCGGTTTCATAGGGTTTCTAACTGCACAACTGTTTTTTCAATGATTCGTCTTTTATCAGTTTAAAATGAGACAAACTTGGATAAACAAAGAACGACAAATAGTATATTACAATGGTCTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAACATCATATCTCTGAGGAG</pcr_primer_p1>
		<pcr_primer_p2>CAATTTTAAGACAAGGATTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTGAACATCATATCTCTGAGGAGGCCCTTCTATTTTTTGGAACCCCTCTATGAAGACCCTTCTATTGGAGGGACCCTTCTATTAAAAAGGCCCTTTGAATACAGGTTTTACGGTATTTTCTTTGATAAGAGAAGTTCTATTAAAATTAACAGCTTTCAATATCTAAAAAATCTAGGCAGAAGGATTCTTGACTAAATACAAATCAAAAAATGGGCGGTGCTAACTGAAATCCTTGTCTTAAAATTG</canonical_amplicon>
		<polymorphic_amplicon>TTGAACATCATATCTCTGAGGAGGCCCTTCTATTTTTTGGAACCCCTCTATGAAGACCCTTCTATTRGAGGGACCCTTCTATTAAAAAGGCCCTTTGAATACAGGTTTTACGGTATTTTCTTTGATAAGAGAAGTTCTATTAAAATTAACAGCTTTCAATATCTAAAAAATCTAGGCAGAAGGATTCTTGACTAAATACAAATCAAAAAATGGGCGGTGCTAACTGAAATCCTTGTCTTAAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36977</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>90217</contig_pos>
        <strand>+</strand>
        <context>AAAAAATGGG[C/T]GGTGCTAACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAATCTAGGCAGAAGGATTCTTGACTAAATACAAATCAAAAAATGGG</left_flank>
        <right_flank>GGTGCTAACTGAAATCCTTGTCTTAAAATTGCCATTTTTCTTGTCACGTA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGGAGACTTAGATCTAAAAGACTTTAAAAGTCAATCTTGACAGTGTAGAAGCTATTTTTATAACAGGATTTACGGTTTCAGAAGCCTTTCATTTTTCCGGTCATTTTTCCGAATACTATCATTTGAAAAATCGAGGAACGCTCGTTCAAAATTCATAAAAATTCATCACTTTTACCGAAACTGAGGAAGGTTTTGAGCAGAAAAGAGTGTTTGAACAAATTCTTGTGAAATTCTCAATTTTCCGAAATAATTTCCATTAGAAACGTATAGAAATTTTATATTTTGAACATCATATCTCTGAGGAGGCCCTTCTATTTTTTGGAACCCCTCTATGAAGACCCTTCTATTGGAGGGACCCTTCTATTAAAAAGGCCCTTTGAATACAGGTTTTACGGTATTTTCTTTGATAAGAGAAGTTCTATTAAAATTAACAGCTTTCAATATCTAAAAAATCTAGGCAGAAGGATTCTTGACTAAATACAAATCAAAAAATGGGCGGTGCTAACTGAAATCCTTGTCTTAAAATTGCCATTTTTCTTGTCACGTAGCTCTTATATCCAAAATTAAGGATTTGCGAATTTCAACGATCGAAAAGTGGTTTCAGTTGCAACAAAGGCTTCAGATCAAGTAGAAAAAAAAATGTATTGTTACTATTACTATATAGCAAAATTAGTAATATTTTAATCTTCTGTTTTTTTTGTTGTTATGGATCAAAATATAGAAGCACGCGGTTTCATAGGGTTTCTAACTGCACAACTGTTTTTTCAATGATTCGTCTTTTATCAGTTTAAAATGAGACAAACTTGGATAAACAAAGAACGACAAATAGTATATTACAATGGTCTTGAAATGAGCTTCGAAAATATTCAAACTATTATTTTCAGCCGGTACTATTTAGGTACAAACTCTAGACATCTGAAAAGATCTTTGAAAATTGAAGCGTCTTTCCCTCGCCGATGAAAGGACCTCCTACGTTTCTTGAAATGAAAAAAACAAA</canonical>
            <polymorphic>TTCTGGAGACTTAGATCTAAAAGACTTTAAAAGTCAATCTTGACAGTGTAGAAGCTATTTTTATAACAGGATTTACGGTTTCAGAAGCCTTTCATTTTTCCGGTCATTTTTCCGAATACTATCATTTGAAAAATCGAGGAACGCTCGTTCAAAATTCATAAAAATTCATCACTTTTACCGAAACTGAGGAAGGTTTTGAGCAGAAAAGAGTGTTTGAACAAATTCTTGTGAAATTCTCAATTTTCCGAAATAATTTCCATTAGAAACGTATAGAAATTTTATATTTTGAACATCATATCTCTGAGGAGGCCCTTCTATTTTTTGGAACCCCTCTATGAAGACCCTTCTATTGGAGGGACCCTTCTATTAAAAAGGCCCTTTGAATACAGGTTTTACGGTATTTTCTTTGATAAGAGAAGTTCTATTAAAATTAACAGCTTTCAATATCTAAAAAATCTAGGCAGAAGGATTCTTGACTAAATACAAATCAAAAAATGGGYGGTGCTAACTGAAATCCTTGTCTTAAAATTGCCATTTTTCTTGTCACGTAGCTCTTATATCCAAAATTAAGGATTTGCGAATTTCAACGATCGAAAAGTGGTTTCAGTTGCAACAAAGGCTTCAGATCAAGTAGAAAAAAAAATGTATTGTTACTATTACTATATAGCAAAATTAGTAATATTTTAATCTTCTGTTTTTTTTGTTGTTATGGATCAAAATATAGAAGCACGCGGTTTCATAGGGTTTCTAACTGCACAACTGTTTTTTCAATGATTCGTCTTTTATCAGTTTAAAATGAGACAAACTTGGATAAACAAAGAACGACAAATAGTATATTACAATGGTCTTGAAATGAGCTTCGAAAATATTCAAACTATTATTTTCAGCCGGTACTATTTAGGTACAAACTCTAGACATCTGAAAAGATCTTTGAAAATTGAAGCGTCTTTCCCTCGCCGATGAAAGGACCTCCTACGTTTCTTGAAATGAAAAAAACAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGGTTTTACGGTATTTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>CTACTTGATCTGAAGCCTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACAGGTTTTACGGTATTTTCTTTGATAAGAGAAGTTCTATTAAAATTAACAGCTTTCAATATCTAAAAAATCTAGGCAGAAGGATTCTTGACTAAATACAAATCAAAAAATGGGCGGTGCTAACTGAAATCCTTGTCTTAAAATTGCCATTTTTCTTGTCACGTAGCTCTTATATCCAAAATTAAGGATTTGCGAATTTCAACGATCGAAAAGTGGTTTCAGTTGCAACAAAGGCTTCAGATCAAGTAG</canonical_amplicon>
		<polymorphic_amplicon>ACAGGTTTTACGGTATTTTCTTTGATAAGAGAAGTTCTATTAAAATTAACAGCTTTCAATATCTAAAAAATCTAGGCAGAAGGATTCTTGACTAAATACAAATCAAAAAATGGGYGGTGCTAACTGAAATCCTTGTCTTAAAATTGCCATTTTTCTTGTCACGTAGCTCTTATATCCAAAATTAAGGATTTGCGAATTTCAACGATCGAAAAGTGGTTTCAGTTGCAACAAAGGCTTCAGATCAAGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36978</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>90352</contig_pos>
        <strand>+</strand>
        <context>GATCAAGTAG[G/T]AAAAAAAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAACGATCGAAAAGTGGTTTCAGTTGCAACAAAGGCTTCAGATCAAGTAG</left_flank>
        <right_flank>AAAAAAAATGTATTGTTACTATTACTATATAGCAAAATTAGTAATATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGAACGCTCGTTCAAAATTCATAAAAATTCATCACTTTTACCGAAACTGAGGAAGGTTTTGAGCAGAAAAGAGTGTTTGAACAAATTCTTGTGAAATTCTCAATTTTCCGAAATAATTTCCATTAGAAACGTATAGAAATTTTATATTTTGAACATCATATCTCTGAGGAGGCCCTTCTATTTTTTGGAACCCCTCTATGAAGACCCTTCTATTGGAGGGACCCTTCTATTAAAAAGGCCCTTTGAATACAGGTTTTACGGTATTTTCTTTGATAAGAGAAGTTCTATTAAAATTAACAGCTTTCAATATCTAAAAAATCTAGGCAGAAGGATTCTTGACTAAATACAAATCAAAAAATGGGCGGTGCTAACTGAAATCCTTGTCTTAAAATTGCCATTTTTCTTGTCACGTAGCTCTTATATCCAAAATTAAGGATTTGCGAATTTCAACGATCGAAAAGTGGTTTCAGTTGCAACAAAGGCTTCAGATCAAGTAGAAAAAAAAATGTATTGTTACTATTACTATATAGCAAAATTAGTAATATTTTAATCTTCTGTTTTTTTTGTTGTTATGGATCAAAATATAGAAGCACGCGGTTTCATAGGGTTTCTAACTGCACAACTGTTTTTTCAATGATTCGTCTTTTATCAGTTTAAAATGAGACAAACTTGGATAAACAAAGAACGACAAATAGTATATTACAATGGTCTTGAAATGAGCTTCGAAAATATTCAAACTATTATTTTCAGCCGGTACTATTTAGGTACAAACTCTAGACATCTGAAAAGATCTTTGAAAATTGAAGCGTCTTTCCCTCGCCGATGAAAGGACCTCCTACGTTTCTTGAAATGAAAAAAACAAAACAAAGCAGAAGTCTTGTGATTTTTGGGACATTGGCAAACTAGACACTATCCGGAAATCAAAAGACAAAAAAACGTAAGGTTTTTATACCGGTTTGTCAAAAGGGTTATCATGGGCGGTACTCTTGCAAAAGTGC</canonical>
            <polymorphic>GAGGAACGCTCGTTCAAAATTCATAAAAATTCATCACTTTTACCGAAACTGAGGAAGGTTTTGAGCAGAAAAGAGTGTTTGAACAAATTCTTGTGAAATTCTCAATTTTCCGAAATAATTTCCATTAGAAACGTATAGAAATTTTATATTTTGAACATCATATCTCTGAGGAGGCCCTTCTATTTTTTGGAACCCCTCTATGAAGACCCTTCTATTGGAGGGACCCTTCTATTAAAAAGGCCCTTTGAATACAGGTTTTACGGTATTTTCTTTGATAAGAGAAGTTCTATTAAAATTAACAGCTTTCAATATCTAAAAAATCTAGGCAGAAGGATTCTTGACTAAATACAAATCAAAAAATGGGCGGTGCTAACTGAAATCCTTGTCTTAAAATTGCCATTTTTCTTGTCACGTAGCTCTTATATCCAAAATTAAGGATTTGCGAATTTCAACGATCGAAAAGTGGTTTCAGTTGCAACAAAGGCTTCAGATCAAGTAGKAAAAAAAATGTATTGTTACTATTACTATATAGCAAAATTAGTAATATTTTAATCTTCTGTTTTTTTTGTTGTTATGGATCAAAATATAGAAGCACGCGGTTTCATAGGGTTTCTAACTGCACAACTGTTTTTTCAATGATTCGTCTTTTATCAGTTTAAAATGAGACAAACTTGGATAAACAAAGAACGACAAATAGTATATTACAATGGTCTTGAAATGAGCTTCGAAAATATTCAAACTATTATTTTCAGCCGGTACTATTTAGGTACAAACTCTAGACATCTGAAAAGATCTTTGAAAATTGAAGCGTCTTTCCCTCGCCGATGAAAGGACCTCCTACGTTTCTTGAAATGAAAAAAACAAAACAAAGCAGAAGTCTTGTGATTTTTGGGACATTGGCAAACTAGACACTATCCGGAAATCAAAAGACAAAAAAACGTAAGGTTTTTATACCGGTTTGTCAAAAGGGTTATCATGGGCGGTACTCTTGCAAAAGTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTTGTCACGTAGCTCTTAT</pcr_primer_p1>
		<pcr_primer_p2>ATAAAAGACGAATCATTGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTTGTCACGTAGCTCTTATATCCAAAATTAAGGATTTGCGAATTTCAACGATCGAAAAGTGGTTTCAGTTGCAACAAAGGCTTCAGATCAAGTAGAAAAAAAAATGTATTGTTACTATTACTATATAGCAAAATTAGTAATATTTTAATCTTCTGTTTTTTTTGTTGTTATGGATCAAAATATAGAAGCACGCGGTTTCATAGGGTTTCTAACTGCACAACTGTTTTTTCAATGATTCGTCTTTTAT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTTGTCACGTAGCTCTTATATCCAAAATTAAGGATTTGCGAATTTCAACGATCGAAAAGTGGTTTCAGTTGCAACAAAGGCTTCAGATCAAGTAGKAAAAAAAATGTATTGTTACTATTACTATATAGCAAAATTAGTAATATTTTAATCTTCTGTTTTTTTTGTTGTTATGGATCAAAATATAGAAGCACGCGGTTTCATAGGGTTTCTAACTGCACAACTGTTTTTTCAATGATTCGTCTTTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36979</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>156754</contig_pos>
        <strand>+</strand>
        <context>GTGATCGAAA[C/T]GTGAGTGGGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTCACTCATTAACACAATAGTGTTCAATTAAAAGAGGAAGTGATCGAAA</left_flank>
        <right_flank>GTGAGTGGGCTGCCTTCCAGTCGAACCTATAGAAAAAGAAATAAATTAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAGTTAGCTTGGGAGGAAGAAGAAGCAGCAAGTCACACATCTGGCAAGGATTCGCCACATCGAAAAAGCTTCTCATCGAAATCCGATGGATTCACTTAATTTCTACAATATGCTCAAAATCTCACCCTGCTCCATAACCGCGATACTCAGAAGTTGCTTAGTGGTCGTGCATGCACGGATGGCTGATGGAAGTTGAAGTCGATGTTCGAGCTCGTCTCTGGAAATTAAAAAATTGAGAGTACGTAAAACCTGTAATAAAAGGGCCCCTAACTTTTAGCTTTGAGCCAATGTTTTTCGGTTCCTTTCAAAGATAAAAAATAGTTTTCAACTGATGAATTCAGAAATGTTTTGTCAGTTGACAAACTTTGGATACCGTGCATAGTAATTGAGATAATTGAGATCAAATTTGAGGGCCCTTCTATTACAGGTTCAAACAAAGGTGAGAAAACTCACTCATTAACACAATAGTGTTCAATTAAAAGAGGAAGTGATCGAAACGTGAGTGGGCTGCCTTCCAGTCGAACCTATAGAAAAAGAAATAAATTAGATTTATTGGATTTCTTTCAATCAGTGATCAAGCTCAATGTTTCAAACCTACCGCTTTCGCTGTTGTTACTTGAGGAACAACAGAATCTGCAGCAGATTTGAGTGGGACGACGAGCTTCTCGATGATGTAGTGATCGATTTCCACGTGTGCTCCAGGAGCCAATCTGACCGAGAGAGCCATGCAATTCTCACGAGTCGATGCTCGAACAATGAAGTTCCCGGGTTCCATTCGACGAAGGAGGTGGAGAACTTCAGGACGACCCATATGTGGGAGGTACCTGGAAAAAAAGTTTTTAGATATTTGAATTGATAGCTTATCCAAAATGGGCAACGGGAAACTTACCATACTGCATGTGTCCGTATAATCTGCTCCAACAACGTCACACTTTTTCCATTCATAGAAGACGTCGACGAGTTGCGTTTGAGCACAAAATCTGAGTAGACACTCTCCT</canonical>
            <polymorphic>AAGAGTTAGCTTGGGAGGAAGAAGAAGCAGCAAGTCACACATCTGGCAAGGATTCGCCACATCGAAAAAGCTTCTCATCGAAATCCGATGGATTCACTTAATTTCTACAATATGCTCAAAATCTCACCCTGCTCCATAACCGCGATACTCAGAAGTTGCTTAGTGGTCGTGCATGCACGGATGGCTGATGGAAGTTGAAGTCGATGTTCGAGCTCGTCTCTGGAAATTAAAAAATTGAGAGTACGTAAAACCTGTAATAAAAGGGCCCCTAACTTTTAGCTTTGAGCCAATGTTTTTCGGTTCCTTTCAAAGATAAAAAATAGTTTTCAACTGATGAATTCAGAAATGTTTTGTCAGTTGACAAACTTTGGATACCGTGCATAGTAATTGAGATAATTGAGATCAAATTTGAGGGCCCTTCTATTACAGGTTCAAACAAAGGTGAGAAAACTCACTCATTAACACAATAGTGTTCAATTAAAAGAGGAAGTGATCGAAAYGTGAGTGGGCTGCCTTCCAGTCGAACCTATAGAAAAAGAAATAAATTAGATTTATTGGATTTCTTTCAATCAGTGATCAAGCTCAATGTTTCAAACCTACCGCTTTCGCTGTTGTTACTTGAGGAACAACAGAATCTGCAGCAGATTTGAGTGGGACGACGAGCTTCTCGATGATGTAGTGATCGATTTCCACGTGTGCTCCAGGAGCCAATCTGACCGAGAGAGCCATGCAATTCTCACGAGTCGATGCTCGAACAATGAAGTTCCCGGGTTCCATTCGACGAAGGAGGTGGAGAACTTCAGGACGACCCATATGTGGGAGGTACCTGGAAAAAAAGTTTTTAGATATTTGAATTGATAGCTTATCCAAAATGGGCAACGGGAAACTTACCATACTGCATGTGTCCGTATAATCTGCTCCAACAACGTCACACTTTTTCCATTCATAGAAGACGTCGACGAGTTGCGTTTGAGCACAAAATCTGAGTAGACACTCTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>256 243 234 193 47 27</canonical_bands>
                <polymorphic_bands>449 243 234 47 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGTGAGAAAACTCACTCATTA</pcr_primer_p1>
		<pcr_primer_p2>CACTACATCATCGAGAAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAGGTGAGAAAACTCACTCATTAACACAATAGTGTTCAATTAAAAGAGGAAGTGATCGAAACGTGAGTGGGCTGCCTTCCAGTCGAACCTATAGAAAAAGAAATAAATTAGATTTATTGGATTTCTTTCAATCAGTGATCAAGCTCAATGTTTCAAACCTACCGCTTTCGCTGTTGTTACTTGAGGAACAACAGAATCTGCAGCAGATTTGAGTGGGACGACGAGCTTCTCGATGATGTAGTG</canonical_amplicon>
		<polymorphic_amplicon>AAGGTGAGAAAACTCACTCATTAACACAATAGTGTTCAATTAAAAGAGGAAGTGATCGAAAYGTGAGTGGGCTGCCTTCCAGTCGAACCTATAGAAAAAGAAATAAATTAGATTTATTGGATTTCTTTCAATCAGTGATCAAGCTCAATGTTTCAAACCTACCGCTTTCGCTGTTGTTACTTGAGGAACAACAGAATCTGCAGCAGATTTGAGTGGGACGACGAGCTTCTCGATGATGTAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36980</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>168375</contig_pos>
        <strand></strand>
        <context>agatattcct[G/C]atktcatgat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TCGATACATATGAAAGTTGTCAAAAAGTGGTCAAGTGACCAGATATTCCT</left_flank>
        <right_flank>ATGTCATGATTAAAATTTTGTCAGTTGATAACTTTTTGGTATCTCTAAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTATAAACACAACTTTTTGTATCGGAGACCCATAATAAATCTGTACAGTCTTGTTGCTGCTGCGTCCACCTGTTAATCCATCATAATTCCACCTATTTTCCTTTGGAAAACAGTAATGTTGATTGGTTTACTAGCGTGTCTAGGCGCATGTCTGCTCCTAGGAACTCTATTCGTTCCAATCAAATCATGTCCACCAACCGATGGATTTGCAACACAGTTGTTCATGTGTTTGGGTAGTTATACCACAAGTTTCGGCGTTTATGCGTACATGGAATTTCCGGGAATCTATAGTTTCGCAATGATTGGTGGAGCAGTTTGGTCAGCGAGTGAGTTTGACAGATTTTAATATCTCATTGTGAGGTTAGGACTGAAGATAATGAATCAATTTGAAGCATTTGATTACCGAATGTCCCTTAACTTTCAACTTCGAGCCAATTTATCTCGATTTCGATACATATGAAAGTTGTCAAAAAGTGGTCAAGTGACCAGATATTCCTGATGTCATGATTAAAATTTTGTCAGTTGATAACTTTTTGGTATCTCTAAGTGTATCTGTTACATAAGCTGAATACCTTCCGGATGGTTAAATAAAAAAGAAGTGGAAGTTGATAACATTTTTTTGAAGCAAATGTTCCTTGGAAAATGATTTAATGTTCTGCAATTTTTTTGTTTCTGAGTTGTTCTGTGAAAACCTCGGCAACTATAAATTCAGTTTGAATTGTCGTCTGCTAATTTTGGAATGTTCCAGAACAATCCCAGTTATTTTTCAGATATTGGGTTGTGGTCTTTTCCACTAAAAATCATTATTTTTTAAATACCGTAATCACTAAAATGAAAGTTTACCCAAACTGTCAACTTTGAGCCAATTTATCTCGGTTCCTTCGAAAGATACCAAAAAGTGATAAACTGACAAAATATTTTTCAAACTATGATAAACATTTTATCAATTGACAAAGTTTTAATATCTTTTTAAAGAGCCGAGTTAATTGAGCGCAAAG</canonical>
            <polymorphic>TACTATAAACACAACTTTTTGTATCGGAGACCCATAATAAATCTGTACAGTCTTGTTGCTGCTGCGTCCACCTGTTAATCCATCATAATTCCACCTATTTTCCTTTGGAAAACAGTAATGTTGATTGGTTTACTAGCGTGTCTAGGCGCATGTCTGCTCCTAGGAACTCTATTCGTTCCAATCAAATCATGTCCACCAACCGATGGATTTGCAACACAGTTGTTCATGTGTTTGGGTAGTTATACCACAAGTTTCGGCGTTTATGCGTACATGGAATTTCCGGGAATCTATAGTTTCGCAATGATTGGTGGAGCAGTTTGGTCAGCGAGTGAGTTTGACAGATTTTAATATCTCATTGTGAGGTTAGGACTGAAGATAATGAATCAATTTGAAGCATTTGATTACCGAATGTCCCTTAACTTTCAACTTCGAGCCAATTTATCTCGATTTCGATACATATGAAAGTTGTCAAAAAGTGGTCAAGTGACCAGATATTCCTSATGTCATGATTAAAATTTTGTCAGTTGATAACTTTTTGGTATCTCTAAGTGTATCTGTTACATAAGCTGAATACCTTCCGGATGGTTAAATAAAAAAGAAGTGGAAGTTGATAACATTTTTTTGAAGCAAATGTTCCTTGGAAAATGATTTAATGTTCTGCAATTTTTTTGTTTCTGAGTTGTTCTGTGAAAACCTCGGCAACTATAAATTCAGTTTGAATTGTCGTCTGCTAATTTTGGAATGTTCCAGAACAATCCCAGTTATTTTTCAGATATTGGGTTGTGGTCTTTTCCACTAAAAATCATTATTTTTTAAATACCGTAATCACTAAAATGAAAGTTTACCCAAACTGTCAACTTTGAGCCAATTTATCTCGGTTCCTTCGAAAGATACCAAAAAGTGATAAACTGACAAAATATTTTTCAAACTATGATAAACATTTTATCAATTGACAAAGTTTTAATATCTTTTTAAAGAGCCGAGTTAATTGAGCGCAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>443 253 169 73 54 8</canonical_bands>
                <polymorphic_bands>443 253 169 73 62</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAGATAATGAATCAATTTGAAG</pcr_primer_p1>
		<pcr_primer_p2>AAAATGTTATCAACTTCCACTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAAGATAATGAATCAATTTGAAGCATTTGATTACCGAATGTCCCTTAACTTTCAACTTCGAGCCAATTTATCTCGATTTCGATACATATGAAAGTTGTCAAAAAGTGGTCAAGTGACCAGATATTCCTGATGTCATGATTAAAATTTTGTCAGTTGATAACTTTTTGGTATCTCTAAGTGTATCTGTTACATAAGCTGAATACCTTCCGGATGGTTAAATAAAAAAGAAGTGGAAGTTGATAACATTTT</canonical_amplicon>
		<polymorphic_amplicon>TGAAGATAATGAATCAATTTGAAGCATTTGATTACCGAATGTCCCTTAACTTTCAACTTCGAGCCAATTTATCTCGATTTCGATACATATGAAAGTTGTCAAAAAGTGGTCAAGTGACCAGATATTCCTSATGTCATGATTAAAATTTTGTCAGTTGATAACTTTTTGGTATCTCTAAGTGTATCTGTTACATAAGCTGAATACCTTCCGGATGGTTAAATAAAAAAGAAGTGGAAGTTGATAACATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36981</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>168378</contig_pos>
        <strand></strand>
        <context>tattcctsat[G/T]tcatgattaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATACATATGAAAGTTGTCAAAAAGTGGTCAAGTGACCAGATATTCCTGAT</left_flank>
        <right_flank>TCATGATTAAAATTTTGTCAGTTGATAACTTTTTGGTATCTCTAAGTGTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAAACACAACTTTTTGTATCGGAGACCCATAATAAATCTGTACAGTCTTGTTGCTGCTGCGTCCACCTGTTAATCCATCATAATTCCACCTATTTTCCTTTGGAAAACAGTAATGTTGATTGGTTTACTAGCGTGTCTAGGCGCATGTCTGCTCCTAGGAACTCTATTCGTTCCAATCAAATCATGTCCACCAACCGATGGATTTGCAACACAGTTGTTCATGTGTTTGGGTAGTTATACCACAAGTTTCGGCGTTTATGCGTACATGGAATTTCCGGGAATCTATAGTTTCGCAATGATTGGTGGAGCAGTTTGGTCAGCGAGTGAGTTTGACAGATTTTAATATCTCATTGTGAGGTTAGGACTGAAGATAATGAATCAATTTGAAGCATTTGATTACCGAATGTCCCTTAACTTTCAACTTCGAGCCAATTTATCTCGATTTCGATACATATGAAAGTTGTCAAAAAGTGGTCAAGTGACCAGATATTCCTGATGTCATGATTAAAATTTTGTCAGTTGATAACTTTTTGGTATCTCTAAGTGTATCTGTTACATAAGCTGAATACCTTCCGGATGGTTAAATAAAAAAGAAGTGGAAGTTGATAACATTTTTTTGAAGCAAATGTTCCTTGGAAAATGATTTAATGTTCTGCAATTTTTTTGTTTCTGAGTTGTTCTGTGAAAACCTCGGCAACTATAAATTCAGTTTGAATTGTCGTCTGCTAATTTTGGAATGTTCCAGAACAATCCCAGTTATTTTTCAGATATTGGGTTGTGGTCTTTTCCACTAAAAATCATTATTTTTTAAATACCGTAATCACTAAAATGAAAGTTTACCCAAACTGTCAACTTTGAGCCAATTTATCTCGGTTCCTTCGAAAGATACCAAAAAGTGATAAACTGACAAAATATTTTTCAAACTATGATAAACATTTTATCAATTGACAAAGTTTTAATATCTTTTTAAAGAGCCGAGTTAATTGAGCGCAAAGTTA</canonical>
            <polymorphic>TATAAACACAACTTTTTGTATCGGAGACCCATAATAAATCTGTACAGTCTTGTTGCTGCTGCGTCCACCTGTTAATCCATCATAATTCCACCTATTTTCCTTTGGAAAACAGTAATGTTGATTGGTTTACTAGCGTGTCTAGGCGCATGTCTGCTCCTAGGAACTCTATTCGTTCCAATCAAATCATGTCCACCAACCGATGGATTTGCAACACAGTTGTTCATGTGTTTGGGTAGTTATACCACAAGTTTCGGCGTTTATGCGTACATGGAATTTCCGGGAATCTATAGTTTCGCAATGATTGGTGGAGCAGTTTGGTCAGCGAGTGAGTTTGACAGATTTTAATATCTCATTGTGAGGTTAGGACTGAAGATAATGAATCAATTTGAAGCATTTGATTACCGAATGTCCCTTAACTTTCAACTTCGAGCCAATTTATCTCGATTTCGATACATATGAAAGTTGTCAAAAAGTGGTCAAGTGACCAGATATTCCTGATKTCATGATTAAAATTTTGTCAGTTGATAACTTTTTGGTATCTCTAAGTGTATCTGTTACATAAGCTGAATACCTTCCGGATGGTTAAATAAAAAAGAAGTGGAAGTTGATAACATTTTTTTGAAGCAAATGTTCCTTGGAAAATGATTTAATGTTCTGCAATTTTTTTGTTTCTGAGTTGTTCTGTGAAAACCTCGGCAACTATAAATTCAGTTTGAATTGTCGTCTGCTAATTTTGGAATGTTCCAGAACAATCCCAGTTATTTTTCAGATATTGGGTTGTGGTCTTTTCCACTAAAAATCATTATTTTTTAAATACCGTAATCACTAAAATGAAAGTTTACCCAAACTGTCAACTTTGAGCCAATTTATCTCGGTTCCTTCGAAAGATACCAAAAAGTGATAAACTGACAAAATATTTTTCAAACTATGATAAACATTTTATCAATTGACAAAGTTTTAATATCTTTTTAAAGAGCCGAGTTAATTGAGCGCAAAGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGATAATGAATCAATTTGAAG</pcr_primer_p1>
		<pcr_primer_p2>AAAATGTTATCAACTTCCACTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAAGATAATGAATCAATTTGAAGCATTTGATTACCGAATGTCCCTTAACTTTCAACTTCGAGCCAATTTATCTCGATTTCGATACATATGAAAGTTGTCAAAAAGTGGTCAAGTGACCAGATATTCCTGATGTCATGATTAAAATTTTGTCAGTTGATAACTTTTTGGTATCTCTAAGTGTATCTGTTACATAAGCTGAATACCTTCCGGATGGTTAAATAAAAAAGAAGTGGAAGTTGATAACATTTT</canonical_amplicon>
		<polymorphic_amplicon>TGAAGATAATGAATCAATTTGAAGCATTTGATTACCGAATGTCCCTTAACTTTCAACTTCGAGCCAATTTATCTCGATTTCGATACATATGAAAGTTGTCAAAAAGTGGTCAAGTGACCAGATATTCCTGATKTCATGATTAAAATTTTGTCAGTTGATAACTTTTTGGTATCTCTAAGTGTATCTGTTACATAAGCTGAATACCTTCCGGATGGTTAAATAAAAAAGAAGTGGAAGTTGATAACATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36982</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>168760</contig_pos>
        <strand></strand>
        <context>tcggttcctt[C/A]raaagatacc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TGAAAGTTTACCCAAACTGTCAACTTTGAGCCAATTTATCTCGGTTCCTT</left_flank>
        <right_flank>GAAAGATACCAAAAAGTGATAAACTGACAAAATATTTTTCAAACTATGAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTGAAGCATTTGATTACCGAATGTCCCTTAACTTTCAACTTCGAGCCAATTTATCTCGATTTCGATACATATGAAAGTTGTCAAAAAGTGGTCAAGTGACCAGATATTCCTGATGTCATGATTAAAATTTTGTCAGTTGATAACTTTTTGGTATCTCTAAGTGTATCTGTTACATAAGCTGAATACCTTCCGGATGGTTAAATAAAAAAGAAGTGGAAGTTGATAACATTTTTTTGAAGCAAATGTTCCTTGGAAAATGATTTAATGTTCTGCAATTTTTTTGTTTCTGAGTTGTTCTGTGAAAACCTCGGCAACTATAAATTCAGTTTGAATTGTCGTCTGCTAATTTTGGAATGTTCCAGAACAATCCCAGTTATTTTTCAGATATTGGGTTGTGGTCTTTTCCACTAAAAATCATTATTTTTTAAATACCGTAATCACTAAAATGAAAGTTTACCCAAACTGTCAACTTTGAGCCAATTTATCTCGGTTCCTTCGAAAGATACCAAAAAGTGATAAACTGACAAAATATTTTTCAAACTATGATAAACATTTTATCAATTGACAAAGTTTTAATATCTTTTTAAAGAGCCGAGTTAATTGAGCGCAAAGTTAACAGTTCGGGTGGGCTTCTATCAGAGGAAGTACGGTACTTCTTTTCCACCAAATAATCTGAAAATTTGTAACGTTTTCTCCAGCTAACTGCTTCGCTGTCTCAATCATGACTCATGTCGGAATGGCGATGTTCATGCTGTTCGCTTCATCAATATCCTGTCTTACCGGATGGGCGATCTCTAGATTCGGACTATTTGGAGTTCCTCCCTCTTTTCCTATGAGCAGCATTCTCAATTATTCTGGAATCGTGCTCTTGATTTTTGGGTAAAGATCCCTTCTAGTTGGGAAGCTATGAAAGTCACTTTTCTCATTTCAGGTCCGCTATTTATCCCTTCATCAAAATCAACGTGTTTCGAGCTGTGAAACCAATAGATCCTCATGT</canonical>
            <polymorphic>AATTTGAAGCATTTGATTACCGAATGTCCCTTAACTTTCAACTTCGAGCCAATTTATCTCGATTTCGATACATATGAAAGTTGTCAAAAAGTGGTCAAGTGACCAGATATTCCTGATGTCATGATTAAAATTTTGTCAGTTGATAACTTTTTGGTATCTCTAAGTGTATCTGTTACATAAGCTGAATACCTTCCGGATGGTTAAATAAAAAAGAAGTGGAAGTTGATAACATTTTTTTGAAGCAAATGTTCCTTGGAAAATGATTTAATGTTCTGCAATTTTTTTGTTTCTGAGTTGTTCTGTGAAAACCTCGGCAACTATAAATTCAGTTTGAATTGTCGTCTGCTAATTTTGGAATGTTCCAGAACAATCCCAGTTATTTTTCAGATATTGGGTTGTGGTCTTTTCCACTAAAAATCATTATTTTTTAAATACCGTAATCACTAAAATGAAAGTTTACCCAAACTGTCAACTTTGAGCCAATTTATCTCGGTTCCTTMGAAAGATACCAAAAAGTGATAAACTGACAAAATATTTTTCAAACTATGATAAACATTTTATCAATTGACAAAGTTTTAATATCTTTTTAAAGAGCCGAGTTAATTGAGCGCAAAGTTAACAGTTCGGGTGGGCTTCTATCAGAGGAAGTACGGTACTTCTTTTCCACCAAATAATCTGAAAATTTGTAACGTTTTCTCCAGCTAACTGCTTCGCTGTCTCAATCATGACTCATGTCGGAATGGCGATGTTCATGCTGTTCGCTTCATCAATATCCTGTCTTACCGGATGGGCGATCTCTAGATTCGGACTATTTGGAGTTCCTCCCTCTTTTCCTATGAGCAGCATTCTCAATTATTCTGGAATCGTGCTCTTGATTTTTGGGTAAAGATCCCTTCTAGTTGGGAAGCTATGAAAGTCACTTTTCTCATTTCAGGTCCGCTATTTATCCCTTCATCAAAATCAACGTGTTTCGAGCTGTGAAACCAATAGATCCTCATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>472 434 45 28 15 6</canonical_bands>
                <polymorphic_bands>906 45 28 15 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGTGGTCTTTTCCACTAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAAACGTTACAAATTTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>GTTGTGGTCTTTTCCACTAAAAATCATTATTTTTTAAATACCGTAATCACTAAAATGAAAGTTTACCCAAACTGTCAACTTTGAGCCAATTTATCTCGGTTCCTTCGAAAGATACCAAAAAGTGATAAACTGACAAAATATTTTTCAAACTATGATAAACATTTTATCAATTGACAAAGTTTTAATATCTTTTTAAAGAGCCGAGTTAATTGAGCGCAAAGTTAACAGTTCGGGTGGGCTTCTATCAGAGGAAGTACGGTACTTCTTTTCCACCAAATAATCTGAAAATTTGTAACGTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>GTTGTGGTCTTTTCCACTAAAAATCATTATTTTTTAAATACCGTAATCACTAAAATGAAAGTTTACCCAAACTGTCAACTTTGAGCCAATTTATCTCGGTTCCTTMGAAAGATACCAAAAAGTGATAAACTGACAAAATATTTTTCAAACTATGATAAACATTTTATCAATTGACAAAGTTTTAATATCTTTTTAAAGAGCCGAGTTAATTGAGCGCAAAGTTAACAGTTCGGGTGGGCTTCTATCAGAGGAAGTACGGTACTTCTTTTCCACCAAATAATCTGAAAATTTGTAACGTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36983</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>168761</contig_pos>
        <strand></strand>
        <context>cggttccttm[G/A]aaagatacca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAAAGTTTACCCAAACTGTCAACTTTGAGCCAATTTATCTCGGTTCCTTC</left_flank>
        <right_flank>AAAGATACCAAAAAGTGATAAACTGACAAAATATTTTTCAAACTATGATA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTGAAGCATTTGATTACCGAATGTCCCTTAACTTTCAACTTCGAGCCAATTTATCTCGATTTCGATACATATGAAAGTTGTCAAAAAGTGGTCAAGTGACCAGATATTCCTGATGTCATGATTAAAATTTTGTCAGTTGATAACTTTTTGGTATCTCTAAGTGTATCTGTTACATAAGCTGAATACCTTCCGGATGGTTAAATAAAAAAGAAGTGGAAGTTGATAACATTTTTTTGAAGCAAATGTTCCTTGGAAAATGATTTAATGTTCTGCAATTTTTTTGTTTCTGAGTTGTTCTGTGAAAACCTCGGCAACTATAAATTCAGTTTGAATTGTCGTCTGCTAATTTTGGAATGTTCCAGAACAATCCCAGTTATTTTTCAGATATTGGGTTGTGGTCTTTTCCACTAAAAATCATTATTTTTTAAATACCGTAATCACTAAAATGAAAGTTTACCCAAACTGTCAACTTTGAGCCAATTTATCTCGGTTCCTTCGAAAGATACCAAAAAGTGATAAACTGACAAAATATTTTTCAAACTATGATAAACATTTTATCAATTGACAAAGTTTTAATATCTTTTTAAAGAGCCGAGTTAATTGAGCGCAAAGTTAACAGTTCGGGTGGGCTTCTATCAGAGGAAGTACGGTACTTCTTTTCCACCAAATAATCTGAAAATTTGTAACGTTTTCTCCAGCTAACTGCTTCGCTGTCTCAATCATGACTCATGTCGGAATGGCGATGTTCATGCTGTTCGCTTCATCAATATCCTGTCTTACCGGATGGGCGATCTCTAGATTCGGACTATTTGGAGTTCCTCCCTCTTTTCCTATGAGCAGCATTCTCAATTATTCTGGAATCGTGCTCTTGATTTTTGGGTAAAGATCCCTTCTAGTTGGGAAGCTATGAAAGTCACTTTTCTCATTTCAGGTCCGCTATTTATCCCTTCATCAAAATCAACGTGTTTCGAGCTGTGAAACCAATAGATCCTCATGTT</canonical>
            <polymorphic>ATTTGAAGCATTTGATTACCGAATGTCCCTTAACTTTCAACTTCGAGCCAATTTATCTCGATTTCGATACATATGAAAGTTGTCAAAAAGTGGTCAAGTGACCAGATATTCCTGATGTCATGATTAAAATTTTGTCAGTTGATAACTTTTTGGTATCTCTAAGTGTATCTGTTACATAAGCTGAATACCTTCCGGATGGTTAAATAAAAAAGAAGTGGAAGTTGATAACATTTTTTTGAAGCAAATGTTCCTTGGAAAATGATTTAATGTTCTGCAATTTTTTTGTTTCTGAGTTGTTCTGTGAAAACCTCGGCAACTATAAATTCAGTTTGAATTGTCGTCTGCTAATTTTGGAATGTTCCAGAACAATCCCAGTTATTTTTCAGATATTGGGTTGTGGTCTTTTCCACTAAAAATCATTATTTTTTAAATACCGTAATCACTAAAATGAAAGTTTACCCAAACTGTCAACTTTGAGCCAATTTATCTCGGTTCCTTCRAAAGATACCAAAAAGTGATAAACTGACAAAATATTTTTCAAACTATGATAAACATTTTATCAATTGACAAAGTTTTAATATCTTTTTAAAGAGCCGAGTTAATTGAGCGCAAAGTTAACAGTTCGGGTGGGCTTCTATCAGAGGAAGTACGGTACTTCTTTTCCACCAAATAATCTGAAAATTTGTAACGTTTTCTCCAGCTAACTGCTTCGCTGTCTCAATCATGACTCATGTCGGAATGGCGATGTTCATGCTGTTCGCTTCATCAATATCCTGTCTTACCGGATGGGCGATCTCTAGATTCGGACTATTTGGAGTTCCTCCCTCTTTTCCTATGAGCAGCATTCTCAATTATTCTGGAATCGTGCTCTTGATTTTTGGGTAAAGATCCCTTCTAGTTGGGAAGCTATGAAAGTCACTTTTCTCATTTCAGGTCCGCTATTTATCCCTTCATCAAAATCAACGTGTTTCGAGCTGTGAAACCAATAGATCCTCATGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>472 434 44 29 15 6</canonical_bands>
                <polymorphic_bands>906 44 29 15 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGTGGTCTTTTCCACTAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAAACGTTACAAATTTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>GTTGTGGTCTTTTCCACTAAAAATCATTATTTTTTAAATACCGTAATCACTAAAATGAAAGTTTACCCAAACTGTCAACTTTGAGCCAATTTATCTCGGTTCCTTCGAAAGATACCAAAAAGTGATAAACTGACAAAATATTTTTCAAACTATGATAAACATTTTATCAATTGACAAAGTTTTAATATCTTTTTAAAGAGCCGAGTTAATTGAGCGCAAAGTTAACAGTTCGGGTGGGCTTCTATCAGAGGAAGTACGGTACTTCTTTTCCACCAAATAATCTGAAAATTTGTAACGTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>GTTGTGGTCTTTTCCACTAAAAATCATTATTTTTTAAATACCGTAATCACTAAAATGAAAGTTTACCCAAACTGTCAACTTTGAGCCAATTTATCTCGGTTCCTTCRAAAGATACCAAAAAGTGATAAACTGACAAAATATTTTTCAAACTATGATAAACATTTTATCAATTGACAAAGTTTTAATATCTTTTTAAAGAGCCGAGTTAATTGAGCGCAAAGTTAACAGTTCGGGTGGGCTTCTATCAGAGGAAGTACGGTACTTCTTTTCCACCAAATAATCTGAAAATTTGTAACGTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36984</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>207680</contig_pos>
        <strand></strand>
        <context>tttaaggacg[A/G]atattaccag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGGCTTGTAAATTCTGGTCAGAAGTTGAAGAGGACTTGTTTTAAGGACG</left_flank>
        <right_flank>ATATTACCAGGTTCTGGTCGGAAATTTTGGTCGGAAGCCAAAAGTTGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTTCTTCCTCATCATCATTATTCTTCATTCGAAATGAGCTCCAATTTTCAAGTAGTAGAAGTCACGAAAGAGGAATCAGTAAACAATATTTAGTGGACGAATAGCATCGGATAACTATGAATGGCATAGAAAGTGATACGGAAAAACGGATAAATGATCGGAAGACGTGTTGATCGGGAAGTGATAATATGATAGGCGCCGGGCTGGTGATAAATGCATGTTGCAGAGGAAAAAGTTACGTTCAAAAATGATTTTATGCTGCTTGTTTTTTCGAGAAATTCCCATGCAGCAAAAAATATTGAAAAAGTGATGTCTTATGGTTATGGGAACGATATGGAATTTTGGTTCATGGGAATGCCAGAATCCCTTATGTGCTTCAGATTGACCGAAAAAAAACTATGATCAATAAATATAAAGTTTACTCCTTGAGGTTATGGAACTCGGCTGTCGGCTTGTAAATTCTGGTCAGAAGTTGAAGAGGACTTGTTTTAAGGACGAATATTACCAGGTTCTGGTCGGAAATTTTGGTCGGAAGCCAAAAGTTGAAATACTACTAGGTCGGAACTTTGTCATAAGTTTGTCGTAGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGACTCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCA</canonical>
            <polymorphic>TTGTTCTTCCTCATCATCATTATTCTTCATTCGAAATGAGCTCCAATTTTCAAGTAGTAGAAGTCACGAAAGAGGAATCAGTAAACAATATTTAGTGGACGAATAGCATCGGATAACTATGAATGGCATAGAAAGTGATACGGAAAAACGGATAAATGATCGGAAGACGTGTTGATCGGGAAGTGATAATATGATAGGCGCCGGGCTGGTGATAAATGCATGTTGCAGAGGAAAAAGTTACGTTCAAAAATGATTTTATGCTGCTTGTTTTTTCGAGAAATTCCCATGCAGCAAAAAATATTGAAAAAGTGATGTCTTATGGTTATGGGAACGATATGGAATTTTGGTTCATGGGAATGCCAGAATCCCTTATGTGCTTCAGATTGACCGAAAAAAAACTATGATCAATAAATATAAAGTTTACTCCTTGAGGTTATGGAACTCGGCTGTCGGCTTGTAAATTCTGGTCAGAAGTTGAAGAGGACTTGTTTTAAGGACGRATATTACCAGGTTCTGGTCGGAAATTTTGGTCGGAAGCCAAAAGTTGAAATACTACTAGGTCGGAACTTTGTCATAAGTTTGTCGTAGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGACTCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>443 210 203 89 55</canonical_bands>
                <polymorphic_bands>646 210 89 55</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCCTTGAGGTTATGGAACTC</pcr_primer_p1>
		<pcr_primer_p2>GGAACTTATCGATTTCTTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>CTCCTTGAGGTTATGGAACTCGGCTGTCGGCTTGTAAATTCTGGTCAGAAGTTGAAGAGGACTTGTTTTAAGGACGAATATTACCAGGTTCTGGTCGGAAATTTTGGTCGGAAGCCAAAAGTTGAAATACTACTAGGTCGGAACTTTGTCATAAGTTTGTCGTAGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCC</canonical_amplicon>
		<polymorphic_amplicon>CTCCTTGAGGTTATGGAACTCGGCTGTCGGCTTGTAAATTCTGGTCAGAAGTTGAAGAGGACTTGTTTTAAGGACGRATATTACCAGGTTCTGGTCGGAAATTTTGGTCGGAAGCCAAAAGTTGAAATACTACTAGGTCGGAACTTTGTCATAAGTTTGTCGTAGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36985</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>207720</contig_pos>
        <strand></strand>
        <context>gtcggaagcc[A/G]aaagttgaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTAAGGACGAATATTACCAGGTTCTGGTCGGAAATTTTGGTCGGAAGCC</left_flank>
        <right_flank>AAAGTTGAAATACTACTAGGTCGGAACTTTGTCATAAGTTTGTCGTAGTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCAATTTTCAAGTAGTAGAAGTCACGAAAGAGGAATCAGTAAACAATATTTAGTGGACGAATAGCATCGGATAACTATGAATGGCATAGAAAGTGATACGGAAAAACGGATAAATGATCGGAAGACGTGTTGATCGGGAAGTGATAATATGATAGGCGCCGGGCTGGTGATAAATGCATGTTGCAGAGGAAAAAGTTACGTTCAAAAATGATTTTATGCTGCTTGTTTTTTCGAGAAATTCCCATGCAGCAAAAAATATTGAAAAAGTGATGTCTTATGGTTATGGGAACGATATGGAATTTTGGTTCATGGGAATGCCAGAATCCCTTATGTGCTTCAGATTGACCGAAAAAAAACTATGATCAATAAATATAAAGTTTACTCCTTGAGGTTATGGAACTCGGCTGTCGGCTTGTAAATTCTGGTCAGAAGTTGAAGAGGACTTGTTTTAAGGACGAATATTACCAGGTTCTGGTCGGAAATTTTGGTCGGAAGCCAAAAGTTGAAATACTACTAGGTCGGAACTTTGTCATAAGTTTGTCGTAGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGACTCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGT</canonical>
            <polymorphic>CTCCAATTTTCAAGTAGTAGAAGTCACGAAAGAGGAATCAGTAAACAATATTTAGTGGACGAATAGCATCGGATAACTATGAATGGCATAGAAAGTGATACGGAAAAACGGATAAATGATCGGAAGACGTGTTGATCGGGAAGTGATAATATGATAGGCGCCGGGCTGGTGATAAATGCATGTTGCAGAGGAAAAAGTTACGTTCAAAAATGATTTTATGCTGCTTGTTTTTTCGAGAAATTCCCATGCAGCAAAAAATATTGAAAAAGTGATGTCTTATGGTTATGGGAACGATATGGAATTTTGGTTCATGGGAATGCCAGAATCCCTTATGTGCTTCAGATTGACCGAAAAAAAACTATGATCAATAAATATAAAGTTTACTCCTTGAGGTTATGGAACTCGGCTGTCGGCTTGTAAATTCTGGTCAGAAGTTGAAGAGGACTTGTTTTAAGGACGAATATTACCAGGTTCTGGTCGGAAATTTTGGTCGGAAGCCRAAAGTTGAAATACTACTAGGTCGGAACTTTGTCATAAGTTTGTCGTAGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGACTCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCTTGAGGTTATGGAACTC</pcr_primer_p1>
		<pcr_primer_p2>GGAACTTATCGATTTCTTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>CTCCTTGAGGTTATGGAACTCGGCTGTCGGCTTGTAAATTCTGGTCAGAAGTTGAAGAGGACTTGTTTTAAGGACGAATATTACCAGGTTCTGGTCGGAAATTTTGGTCGGAAGCCAAAAGTTGAAATACTACTAGGTCGGAACTTTGTCATAAGTTTGTCGTAGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCC</canonical_amplicon>
		<polymorphic_amplicon>CTCCTTGAGGTTATGGAACTCGGCTGTCGGCTTGTAAATTCTGGTCAGAAGTTGAAGAGGACTTGTTTTAAGGACGAATATTACCAGGTTCTGGTCGGAAATTTTGGTCGGAAGCCRAAAGTTGAAATACTACTAGGTCGGAACTTTGTCATAAGTTTGTCGTAGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36986</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>207817</contig_pos>
        <strand></strand>
        <context>ccaatctccg[G/T]ccagaagttg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCG</left_flank>
        <right_flank>CCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGA</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATACGGAAAAACGGATAAATGATCGGAAGACGTGTTGATCGGGAAGTGATAATATGATAGGCGCCGGGCTGGTGATAAATGCATGTTGCAGAGGAAAAAGTTACGTTCAAAAATGATTTTATGCTGCTTGTTTTTTCGAGAAATTCCCATGCAGCAAAAAATATTGAAAAAGTGATGTCTTATGGTTATGGGAACGATATGGAATTTTGGTTCATGGGAATGCCAGAATCCCTTATGTGCTTCAGATTGACCGAAAAAAAACTATGATCAATAAATATAAAGTTTACTCCTTGAGGTTATGGAACTCGGCTGTCGGCTTGTAAATTCTGGTCAGAAGTTGAAGAGGACTTGTTTTAAGGACGAATATTACCAGGTTCTGGTCGGAAATTTTGGTCGGAAGCCAAAAGTTGAAATACTACTAGGTCGGAACTTTGTCATAAGTTTGTCGTAGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGACTCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATT</canonical>
            <polymorphic>ATACGGAAAAACGGATAAATGATCGGAAGACGTGTTGATCGGGAAGTGATAATATGATAGGCGCCGGGCTGGTGATAAATGCATGTTGCAGAGGAAAAAGTTACGTTCAAAAATGATTTTATGCTGCTTGTTTTTTCGAGAAATTCCCATGCAGCAAAAAATATTGAAAAAGTGATGTCTTATGGTTATGGGAACGATATGGAATTTTGGTTCATGGGAATGCCAGAATCCCTTATGTGCTTCAGATTGACCGAAAAAAAACTATGATCAATAAATATAAAGTTTACTCCTTGAGGTTATGGAACTCGGCTGTCGGCTTGTAAATTCTGGTCAGAAGTTGAAGAGGACTTGTTTTAAGGACGAATATTACCAGGTTCTGGTCGGAAATTTTGGTCGGAAGCCAAAAGTTGAAATACTACTAGGTCGGAACTTTGTCATAAGTTTGTCGTAGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGKCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGACTCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>504 376 120</canonical_bands>
                <polymorphic_bands>624 376</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 415 64 18</canonical_bands>
                <polymorphic_bands>521 415 64</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>409 241 100 91 84 68 7</canonical_bands>
                <polymorphic_bands>409 241 191 84 68 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCCTTGAGGTTATGGAACTC</pcr_primer_p1>
		<pcr_primer_p2>AATCATGTTAACGGAAACCTT</pcr_primer_p2>
		<pcr_amplicon_size>295</pcr_amplicon_size>
		<canonical_amplicon>CTCCTTGAGGTTATGGAACTCGGCTGTCGGCTTGTAAATTCTGGTCAGAAGTTGAAGAGGACTTGTTTTAAGGACGAATATTACCAGGTTCTGGTCGGAAATTTTGGTCGGAAGCCAAAAGTTGAAATACTACTAGGTCGGAACTTTGTCATAAGTTTGTCGTAGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGACTCGGAAAGGTTTCCGTTAACATGATT</canonical_amplicon>
		<polymorphic_amplicon>CTCCTTGAGGTTATGGAACTCGGCTGTCGGCTTGTAAATTCTGGTCAGAAGTTGAAGAGGACTTGTTTTAAGGACGAATATTACCAGGTTCTGGTCGGAAATTTTGGTCGGAAGCCAAAAGTTGAAATACTACTAGGTCGGAACTTTGTCATAAGTTTGTCGTAGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGKCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGACTCGGAAAGGTTTCCGTTAACATGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36987</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>207872</contig_pos>
        <strand>+</strand>
        <context>CCTCGAGGGA[C/T]TCGGAAAGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGA</left_flank>
        <right_flank>TCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCA</right_flank>
        <qual_score>145</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAGGCGCCGGGCTGGTGATAAATGCATGTTGCAGAGGAAAAAGTTACGTTCAAAAATGATTTTATGCTGCTTGTTTTTTCGAGAAATTCCCATGCAGCAAAAAATATTGAAAAAGTGATGTCTTATGGTTATGGGAACGATATGGAATTTTGGTTCATGGGAATGCCAGAATCCCTTATGTGCTTCAGATTGACCGAAAAAAAACTATGATCAATAAATATAAAGTTTACTCCTTGAGGTTATGGAACTCGGCTGTCGGCTTGTAAATTCTGGTCAGAAGTTGAAGAGGACTTGTTTTAAGGACGAATATTACCAGGTTCTGGTCGGAAATTTTGGTCGGAAGCCAAAAGTTGAAATACTACTAGGTCGGAACTTTGTCATAAGTTTGTCGTAGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGACTCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGAAATACA</canonical>
            <polymorphic>GATAGGCGCCGGGCTGGTGATAAATGCATGTTGCAGAGGAAAAAGTTACGTTCAAAAATGATTTTATGCTGCTTGTTTTTTCGAGAAATTCCCATGCAGCAAAAAATATTGAAAAAGTGATGTCTTATGGTTATGGGAACGATATGGAATTTTGGTTCATGGGAATGCCAGAATCCCTTATGTGCTTCAGATTGACCGAAAAAAAACTATGATCAATAAATATAAAGTTTACTCCTTGAGGTTATGGAACTCGGCTGTCGGCTTGTAAATTCTGGTCAGAAGTTGAAGAGGACTTGTTTTAAGGACGAATATTACCAGGTTCTGGTCGGAAATTTTGGTCGGAAGCCAAAAGTTGAAATACTACTAGGTCGGAACTTTGTCATAAGTTTGTCGTAGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGAYTCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGAAATACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCTTGAGGTTATGGAACTC</pcr_primer_p1>
		<pcr_primer_p2>CAGACCTGGAAACTTTTAAGC</pcr_primer_p2>
		<pcr_amplicon_size>325</pcr_amplicon_size>
		<canonical_amplicon>CTCCTTGAGGTTATGGAACTCGGCTGTCGGCTTGTAAATTCTGGTCAGAAGTTGAAGAGGACTTGTTTTAAGGACGAATATTACCAGGTTCTGGTCGGAAATTTTGGTCGGAAGCCAAAAGTTGAAATACTACTAGGTCGGAACTTTGTCATAAGTTTGTCGTAGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGACTCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTG</canonical_amplicon>
		<polymorphic_amplicon>CTCCTTGAGGTTATGGAACTCGGCTGTCGGCTTGTAAATTCTGGTCAGAAGTTGAAGAGGACTTGTTTTAAGGACGAATATTACCAGGTTCTGGTCGGAAATTTTGGTCGGAAGCCAAAAGTTGAAATACTACTAGGTCGGAACTTTGTCATAAGTTTGTCGTAGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGAYTCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36988</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>207960</contig_pos>
        <strand>+</strand>
        <context>TCTACAACAA[A/C]CCCTGTTTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAA</left_flank>
        <right_flank>CCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCCATGCAGCAAAAAATATTGAAAAAGTGATGTCTTATGGTTATGGGAACGATATGGAATTTTGGTTCATGGGAATGCCAGAATCCCTTATGTGCTTCAGATTGACCGAAAAAAAACTATGATCAATAAATATAAAGTTTACTCCTTGAGGTTATGGAACTCGGCTGTCGGCTTGTAAATTCTGGTCAGAAGTTGAAGAGGACTTGTTTTAAGGACGAATATTACCAGGTTCTGGTCGGAAATTTTGGTCGGAAGCCAAAAGTTGAAATACTACTAGGTCGGAACTTTGTCATAAGTTTGTCGTAGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGACTCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAA</canonical>
            <polymorphic>TTCCCATGCAGCAAAAAATATTGAAAAAGTGATGTCTTATGGTTATGGGAACGATATGGAATTTTGGTTCATGGGAATGCCAGAATCCCTTATGTGCTTCAGATTGACCGAAAAAAAACTATGATCAATAAATATAAAGTTTACTCCTTGAGGTTATGGAACTCGGCTGTCGGCTTGTAAATTCTGGTCAGAAGTTGAAGAGGACTTGTTTTAAGGACGAATATTACCAGGTTCTGGTCGGAAATTTTGGTCGGAAGCCAAAAGTTGAAATACTACTAGGTCGGAACTTTGTCATAAGTTTGTCGTAGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGACTCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAAMCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTCCGTTAACATGATTCTTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGTTTTGTCCTGTACTGTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAAMCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36989</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>207993</contig_pos>
        <strand>+</strand>
        <context>TGATTTAATA[A/G]CAAACCGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATA</left_flank>
        <right_flank>CAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCC</right_flank>
        <qual_score>145</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTTATGGTTATGGGAACGATATGGAATTTTGGTTCATGGGAATGCCAGAATCCCTTATGTGCTTCAGATTGACCGAAAAAAAACTATGATCAATAAATATAAAGTTTACTCCTTGAGGTTATGGAACTCGGCTGTCGGCTTGTAAATTCTGGTCAGAAGTTGAAGAGGACTTGTTTTAAGGACGAATATTACCAGGTTCTGGTCGGAAATTTTGGTCGGAAGCCAAAAGTTGAAATACTACTAGGTCGGAACTTTGTCATAAGTTTGTCGTAGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGACTCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTAAAAG</canonical>
            <polymorphic>GTCTTATGGTTATGGGAACGATATGGAATTTTGGTTCATGGGAATGCCAGAATCCCTTATGTGCTTCAGATTGACCGAAAAAAAACTATGATCAATAAATATAAAGTTTACTCCTTGAGGTTATGGAACTCGGCTGTCGGCTTGTAAATTCTGGTCAGAAGTTGAAGAGGACTTGTTTTAAGGACGAATATTACCAGGTTCTGGTCGGAAATTTTGGTCGGAAGCCAAAAGTTGAAATACTACTAGGTCGGAACTTTGTCATAAGTTTGTCGTAGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGACTCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATARCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTCCGTTAACATGATTCTTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGTTTTGTCCTGTACTGTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATARCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36990</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>208013</contig_pos>
        <strand>+</strand>
        <context>TCTGAGTTCT[C/T]TAACCTGAKT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCT</left_flank>
        <right_flank>TAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATGGAATTTTGGTTCATGGGAATGCCAGAATCCCTTATGTGCTTCAGATTGACCGAAAAAAAACTATGATCAATAAATATAAAGTTTACTCCTTGAGGTTATGGAACTCGGCTGTCGGCTTGTAAATTCTGGTCAGAAGTTGAAGAGGACTTGTTTTAAGGACGAATATTACCAGGTTCTGGTCGGAAATTTTGGTCGGAAGCCAAAAGTTGAAATACTACTAGGTCGGAACTTTGTCATAAGTTTGTCGTAGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGACTCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTT</canonical>
            <polymorphic>ATATGGAATTTTGGTTCATGGGAATGCCAGAATCCCTTATGTGCTTCAGATTGACCGAAAAAAAACTATGATCAATAAATATAAAGTTTACTCCTTGAGGTTATGGAACTCGGCTGTCGGCTTGTAAATTCTGGTCAGAAGTTGAAGAGGACTTGTTTTAAGGACGAATATTACCAGGTTCTGGTCGGAAATTTTGGTCGGAAGCCAAAAGTTGAAATACTACTAGGTCGGAACTTTGTCATAAGTTTGTCGTAGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGACTCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTYTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>217 158 129 128 113 108 77 26 22 22</canonical_bands>
                <polymorphic_bands>217 158 134 129 128 113 77 22 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTCCGTTAACATGATTCTTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGTTTTGTCCTGTACTGTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTYTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36991</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>208022</contig_pos>
        <strand>+</strand>
        <context>TYTAACCTGA[G/T]TTTTGAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGA</left_flank>
        <right_flank>TTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACAT</right_flank>
        <qual_score>146</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGGTTCATGGGAATGCCAGAATCCCTTATGTGCTTCAGATTGACCGAAAAAAAACTATGATCAATAAATATAAAGTTTACTCCTTGAGGTTATGGAACTCGGCTGTCGGCTTGTAAATTCTGGTCAGAAGTTGAAGAGGACTTGTTTTAAGGACGAATATTACCAGGTTCTGGTCGGAAATTTTGGTCGGAAGCCAAAAGTTGAAATACTACTAGGTCGGAACTTTGTCATAAGTTTGTCGTAGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGACTCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTTATTGTCTAA</canonical>
            <polymorphic>TTTGGTTCATGGGAATGCCAGAATCCCTTATGTGCTTCAGATTGACCGAAAAAAAACTATGATCAATAAATATAAAGTTTACTCCTTGAGGTTATGGAACTCGGCTGTCGGCTTGTAAATTCTGGTCAGAAGTTGAAGAGGACTTGTTTTAAGGACGAATATTACCAGGTTCTGGTCGGAAATTTTGGTCGGAAGCCAAAAGTTGAAATACTACTAGGTCGGAACTTTGTCATAAGTTTGTCGTAGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGACTCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAKTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTTATTGTCTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 482 14</canonical_bands>
                <polymorphic_bands>518 482</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTCCGTTAACATGATTCTTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGTTTTGTCCTGTACTGTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAKTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36992</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>208048</contig_pos>
        <strand>+</strand>
        <context>GTTTCCTAAA[A/G]TRCATGGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAA</left_flank>
        <right_flank>TACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAA</right_flank>
        <qual_score>145</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTATGTGCTTCAGATTGACCGAAAAAAAACTATGATCAATAAATATAAAGTTTACTCCTTGAGGTTATGGAACTCGGCTGTCGGCTTGTAAATTCTGGTCAGAAGTTGAAGAGGACTTGTTTTAAGGACGAATATTACCAGGTTCTGGTCGGAAATTTTGGTCGGAAGCCAAAAGTTGAAATACTACTAGGTCGGAACTTTGTCATAAGTTTGTCGTAGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGACTCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTTATTGTCTAAAATTTTGTCAGCTGGGGGAAAATGAC</canonical>
            <polymorphic>CTTATGTGCTTCAGATTGACCGAAAAAAAACTATGATCAATAAATATAAAGTTTACTCCTTGAGGTTATGGAACTCGGCTGTCGGCTTGTAAATTCTGGTCAGAAGTTGAAGAGGACTTGTTTTAAGGACGAATATTACCAGGTTCTGGTCGGAAATTTTGGTCGGAAGCCAAAAGTTGAAATACTACTAGGTCGGAACTTTGTCATAAGTTTGTCGTAGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGACTCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAARTACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTTATTGTCTAAAATTTTGTCAGCTGGGGGAAAATGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTCCGTTAACATGATTCTTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGTTTTGTCCTGTACTGTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAARTACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36993</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>208050</contig_pos>
        <strand>+</strand>
        <context>TTCCTAAART[A/G]CATGGAGATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAAT</left_flank>
        <right_flank>CATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAAC</right_flank>
        <qual_score>145</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGTGCTTCAGATTGACCGAAAAAAAACTATGATCAATAAATATAAAGTTTACTCCTTGAGGTTATGGAACTCGGCTGTCGGCTTGTAAATTCTGGTCAGAAGTTGAAGAGGACTTGTTTTAAGGACGAATATTACCAGGTTCTGGTCGGAAATTTTGGTCGGAAGCCAAAAGTTGAAATACTACTAGGTCGGAACTTTGTCATAAGTTTGTCGTAGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGACTCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTTATTGTCTAAAATTTTGTCAGCTGGGGGAAAATGACGA</canonical>
            <polymorphic>TATGTGCTTCAGATTGACCGAAAAAAAACTATGATCAATAAATATAAAGTTTACTCCTTGAGGTTATGGAACTCGGCTGTCGGCTTGTAAATTCTGGTCAGAAGTTGAAGAGGACTTGTTTTAAGGACGAATATTACCAGGTTCTGGTCGGAAATTTTGGTCGGAAGCCAAAAGTTGAAATACTACTAGGTCGGAACTTTGTCATAAGTTTGTCGTAGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGACTCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATRCATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTTATTGTCTAAAATTTTGTCAGCTGGGGGAAAATGACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTCCGTTAACATGATTCTTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGTTTTGTCCTGTACTGTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTT</canonical_amplicon>
		<polymorphic_amplicon>GTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATRCATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36994</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>208173</contig_pos>
        <strand>+</strand>
        <context>CAAAATAGTT[C/T]AAGTCCATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTT</left_flank>
        <right_flank>AAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGACGAATATTACCAGGTTCTGGTCGGAAATTTTGGTCGGAAGCCAAAAGTTGAAATACTACTAGGTCGGAACTTTGTCATAAGTTTGTCGTAGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGACTCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTTATTGTCTAAAATTTTGTCAGCTGGGGGAAAATGACGACAATATTTGTAGGTTACGGTAGTTCTCGTTGTTGGACAGCCACGGCCTCCTCATGAAAATATGCTGACCGAACTAAAAATCTAATTTTTGTACTCCGATTGTTCGTATCATGTACTCCGAAGA</canonical>
            <polymorphic>AGGACGAATATTACCAGGTTCTGGTCGGAAATTTTGGTCGGAAGCCAAAAGTTGAAATACTACTAGGTCGGAACTTTGTCATAAGTTTGTCGTAGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGACTCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTYAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTTATTGTCTAAAATTTTGTCAGCTGGGGGAAAATGACGACAATATTTGTAGGTTACGGTAGTTCTCGTTGTTGGACAGCCACGGCCTCCTCATGAAAATATGCTGACCGAACTAAAAATCTAATTTTTGTACTCCGATTGTTCGTATCATGTACTCCGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGTACAGGACAAAACTTTTTAAT</pcr_primer_p1>
		<pcr_primer_p2>ATCAGTTTAGTTGTGGTGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGAT</canonical_amplicon>
		<polymorphic_amplicon>ACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTYAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36995</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>208265</contig_pos>
        <strand>+</strand>
        <context>TCTAAAAATT[C/T]CAGRACTTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATT</left_flank>
        <right_flank>CAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGACTCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTTATTGTCTAAAATTTTGTCAGCTGGGGGAAAATGACGACAATATTTGTAGGTTACGGTAGTTCTCGTTGTTGGACAGCCACGGCCTCCTCATGAAAATATGCTGACCGAACTAAAAATCTAATTTTTGTACTCCGATTGTTCGTATCATGTACTCCGAAGATGAGTTTGGTAAACCTGAAACAACATCTTTCTATCAACATTGAATGAATGCTTTCAGATTCAAAAATTTATTAAAGTAATTAATAGAGGCGA</canonical>
            <polymorphic>TAGTTTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGACTCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTYCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTTATTGTCTAAAATTTTGTCAGCTGGGGGAAAATGACGACAATATTTGTAGGTTACGGTAGTTCTCGTTGTTGGACAGCCACGGCCTCCTCATGAAAATATGCTGACCGAACTAAAAATCTAATTTTTGTACTCCGATTGTTCGTATCATGTACTCCGAAGATGAGTTTGGTAAACCTGAAACAACATCTTTCTATCAACATTGAATGAATGCTTTCAGATTCAAAAATTTATTAAAGTAATTAATAGAGGCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>431 248 215 64 28 14</canonical_bands>
                <polymorphic_bands>431 312 215 28 14</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>223 197 137 130 71 65 61 39 36 22 19</canonical_bands>
                <polymorphic_bands>223 197 137 130 84 71 61 39 36 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGTACAGGACAAAACTTTTTAAT</pcr_primer_p1>
		<pcr_primer_p2>ATCAGTTTAGTTGTGGTGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGAT</canonical_amplicon>
		<polymorphic_amplicon>ACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTYCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36996</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>208269</contig_pos>
        <strand>+</strand>
        <context>AAAATTYCAG[A/G]ACTTAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAG</left_flank>
        <right_flank>ACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGACTCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTTATTGTCTAAAATTTTGTCAGCTGGGGGAAAATGACGACAATATTTGTAGGTTACGGTAGTTCTCGTTGTTGGACAGCCACGGCCTCCTCATGAAAATATGCTGACCGAACTAAAAATCTAATTTTTGTACTCCGATTGTTCGTATCATGTACTCCGAAGATGAGTTTGGTAAACCTGAAACAACATCTTTCTATCAACATTGAATGAATGCTTTCAGATTCAAAAATTTATTAAAGTAATTAATAGAGGCGACGGA</canonical>
            <polymorphic>TTGGTCCGCTTCAGTAGCGGTCTTATCCGGAATCTGACCAATCTCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGACTCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGRACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTTATTGTCTAAAATTTTGTCAGCTGGGGGAAAATGACGACAATATTTGTAGGTTACGGTAGTTCTCGTTGTTGGACAGCCACGGCCTCCTCATGAAAATATGCTGACCGAACTAAAAATCTAATTTTTGTACTCCGATTGTTCGTATCATGTACTCCGAAGATGAGTTTGGTAAACCTGAAACAACATCTTTCTATCAACATTGAATGAATGCTTTCAGATTCAAAAATTTATTAAAGTAATTAATAGAGGCGACGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>223 197 137 130 71 65 61 40 35 22 19</canonical_bands>
                <polymorphic_bands>223 197 137 130 84 71 61 40 35 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGTACAGGACAAAACTTTTTAAT</pcr_primer_p1>
		<pcr_primer_p2>ATCAGTTTAGTTGTGGTGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGAT</canonical_amplicon>
		<polymorphic_amplicon>ACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGRACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36997</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>208312</contig_pos>
        <strand>+</strand>
        <context>GATCCAAACA[G/T]AGATTTTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACA</left_flank>
        <right_flank>AGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGACTCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTTATTGTCTAAAATTTTGTCAGCTGGGGGAAAATGACGACAATATTTGTAGGTTACGGTAGTTCTCGTTGTTGGACAGCCACGGCCTCCTCATGAAAATATGCTGACCGAACTAAAAATCTAATTTTTGTACTCCGATTGTTCGTATCATGTACTCCGAAGATGAGTTTGGTAAACCTGAAACAACATCTTTCTATCAACATTGAATGAATGCTTTCAGATTCAAAAATTTATTAAAGTAATTAATAGAGGCGACGGAAACTCGAGAGCTTTTTTCCCTTTTCTCTGATTTTCGTAGATGA</canonical>
            <polymorphic>TCCGGCCAGAAGTTGCCATTGACCCGAGAAGAAAAGAAATCGATAAGTTCCTCGAGGGACTCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAKAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTTATTGTCTAAAATTTTGTCAGCTGGGGGAAAATGACGACAATATTTGTAGGTTACGGTAGTTCTCGTTGTTGGACAGCCACGGCCTCCTCATGAAAATATGCTGACCGAACTAAAAATCTAATTTTTGTACTCCGATTGTTCGTATCATGTACTCCGAAGATGAGTTTGGTAAACCTGAAACAACATCTTTCTATCAACATTGAATGAATGCTTTCAGATTCAAAAATTTATTAAAGTAATTAATAGAGGCGACGGAAACTCGAGAGCTTTTTTCCCTTTTCTCTGATTTTCGTAGATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTGAAATCTCTTGTTAACTCT</pcr_primer_p1>
		<pcr_primer_p2>TTCGGTCAGCATATTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>388</pcr_amplicon_size>
		<canonical_amplicon>TGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTTATTGTCTAAAATTTTGTCAGCTGGGGGAAAATGACGACAATATTTGTAGGTTACGGTAGTTCTCGTTGTTGGACAGCCACGGCCTCCTCATGAAAATATGCTGACCGAA</canonical_amplicon>
		<polymorphic_amplicon>TGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAKAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTTATTGTCTAAAATTTTGTCAGCTGGGGGAAAATGACGACAATATTTGTAGGTTACGGTAGTTCTCGTTGTTGGACAGCCACGGCCTCCTCATGAAAATATGCTGACCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36998</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>208366</contig_pos>
        <strand>+</strand>
        <context>AAACCAAGAG[A/G]AATACAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAG</left_flank>
        <right_flank>AATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGGACTCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTTATTGTCTAAAATTTTGTCAGCTGGGGGAAAATGACGACAATATTTGTAGGTTACGGTAGTTCTCGTTGTTGGACAGCCACGGCCTCCTCATGAAAATATGCTGACCGAACTAAAAATCTAATTTTTGTACTCCGATTGTTCGTATCATGTACTCCGAAGATGAGTTTGGTAAACCTGAAACAACATCTTTCTATCAACATTGAATGAATGCTTTCAGATTCAAAAATTTATTAAAGTAATTAATAGAGGCGACGGAAACTCGAGAGCTTTTTTCCCTTTTCTCTGATTTTCGTAGATGAAAACGTTTCAATTATTCTGGAAGGTACTTGAATTGATCCTTGCTGATCCATGAC</canonical>
            <polymorphic>AGGGACTCGGAAAGGTTTCCGTTAACATGATTCTTCAACGAGCTTAAAAGTTTCCAGGTCTGGAAAACATTAGTGTCCATTTTTCTACAACAACCCCTGTTTTACAACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGRAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTTATTGTCTAAAATTTTGTCAGCTGGGGGAAAATGACGACAATATTTGTAGGTTACGGTAGTTCTCGTTGTTGGACAGCCACGGCCTCCTCATGAAAATATGCTGACCGAACTAAAAATCTAATTTTTGTACTCCGATTGTTCGTATCATGTACTCCGAAGATGAGTTTGGTAAACCTGAAACAACATCTTTCTATCAACATTGAATGAATGCTTTCAGATTCAAAAATTTATTAAAGTAATTAATAGAGGCGACGGAAACTCGAGAGCTTTTTTCCCTTTTCTCTGATTTTCGTAGATGAAAACGTTTCAATTATTCTGGAAGGTACTTGAATTGATCCTTGCTGATCCATGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCTGAAATCTCTTGTTAACTCT</pcr_primer_p1>
		<pcr_primer_p2>TTCGGTCAGCATATTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>388</pcr_amplicon_size>
		<canonical_amplicon>TGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTTATTGTCTAAAATTTTGTCAGCTGGGGGAAAATGACGACAATATTTGTAGGTTACGGTAGTTCTCGTTGTTGGACAGCCACGGCCTCCTCATGAAAATATGCTGACCGAA</canonical_amplicon>
		<polymorphic_amplicon>TGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGRAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTTATTGTCTAAAATTTTGTCAGCTGGGGGAAAATGACGACAATATTTGTAGGTTACGGTAGTTCTCGTTGTTGGACAGCCACGGCCTCCTCATGAAAATATGCTGACCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb36999</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>208471</contig_pos>
        <strand></strand>
        <context>agtcccacaa[T/C]gacaactacc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAA</left_flank>
        <right_flank>GACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTTATTGTCTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTTATTGTCTAAAATTTTGTCAGCTGGGGGAAAATGACGACAATATTTGTAGGTTACGGTAGTTCTCGTTGTTGGACAGCCACGGCCTCCTCATGAAAATATGCTGACCGAACTAAAAATCTAATTTTTGTACTCCGATTGTTCGTATCATGTACTCCGAAGATGAGTTTGGTAAACCTGAAACAACATCTTTCTATCAACATTGAATGAATGCTTTCAGATTCAAAAATTTATTAAAGTAATTAATAGAGGCGACGGAAACTCGAGAGCTTTTTTCCCTTTTCTCTGATTTTCGTAGATGAAAACGTTTCAATTATTCTGGAAGGTACTTGAATTGATCCTTGCTGATCCATGACTGAATGATTTGGAAGTCGATTTGTGACCTCTGATGACATGCGGAAAGATCGTAGTTGTTGGAGAACATGCCTCAAATTTCGTTCATTCAATATCTACCAGAATAA</canonical>
            <polymorphic>AACTGTTGAGATGATTTAATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAAYGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTTATTGTCTAAAATTTTGTCAGCTGGGGGAAAATGACGACAATATTTGTAGGTTACGGTAGTTCTCGTTGTTGGACAGCCACGGCCTCCTCATGAAAATATGCTGACCGAACTAAAAATCTAATTTTTGTACTCCGATTGTTCGTATCATGTACTCCGAAGATGAGTTTGGTAAACCTGAAACAACATCTTTCTATCAACATTGAATGAATGCTTTCAGATTCAAAAATTTATTAAAGTAATTAATAGAGGCGACGGAAACTCGAGAGCTTTTTTCCCTTTTCTCTGATTTTCGTAGATGAAAACGTTTCAATTATTCTGGAAGGTACTTGAATTGATCCTTGCTGATCCATGACTGAATGATTTGGAAGTCGATTTGTGACCTCTGATGACATGCGGAAAGATCGTAGTTGTTGGAGAACATGCCTCAAATTTCGTTCATTCAATATCTACCAGAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACTAAACTGATAGAAACCAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTCGGTCAGCATATTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>282</pcr_amplicon_size>
		<canonical_amplicon>CAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTTATTGTCTAAAATTTTGTCAGCTGGGGGAAAATGACGACAATATTTGTAGGTTACGGTAGTTCTCGTTGTTGGACAGCCACGGCCTCCTCATGAAAATATGCTGACCGAA</canonical_amplicon>
		<polymorphic_amplicon>CAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAAYGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTTATTGTCTAAAATTTTGTCAGCTGGGGGAAAATGACGACAATATTTGTAGGTTACGGTAGTTCTCGTTGTTGGACAGCCACGGCCTCCTCATGAAAATATGCTGACCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37000</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>208489</contig_pos>
        <strand></strand>
        <context>accgtaacct[A/G]aaagtatttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCT</left_flank>
        <right_flank>AAAGTATTTTTATTTACCGAATTTATTGTCTAAAATTTTGTCAGCTGGGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTTATTGTCTAAAATTTTGTCAGCTGGGGGAAAATGACGACAATATTTGTAGGTTACGGTAGTTCTCGTTGTTGGACAGCCACGGCCTCCTCATGAAAATATGCTGACCGAACTAAAAATCTAATTTTTGTACTCCGATTGTTCGTATCATGTACTCCGAAGATGAGTTTGGTAAACCTGAAACAACATCTTTCTATCAACATTGAATGAATGCTTTCAGATTCAAAAATTTATTAAAGTAATTAATAGAGGCGACGGAAACTCGAGAGCTTTTTTCCCTTTTCTCTGATTTTCGTAGATGAAAACGTTTCAATTATTCTGGAAGGTACTTGAATTGATCCTTGCTGATCCATGACTGAATGATTTGGAAGTCGATTTGTGACCTCTGATGACATGCGGAAAGATCGTAGTTGTTGGAGAACATGCCTCAAATTTCGTTCATTCAATATCTACCAGAATAAAATTAAACTCACAGAAAG</canonical>
            <polymorphic>ATAGCAAACCGAATCTGAGTTCTTTAACCTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTRAAAGTATTTTTATTTACCGAATTTATTGTCTAAAATTTTGTCAGCTGGGGGAAAATGACGACAATATTTGTAGGTTACGGTAGTTCTCGTTGTTGGACAGCCACGGCCTCCTCATGAAAATATGCTGACCGAACTAAAAATCTAATTTTTGTACTCCGATTGTTCGTATCATGTACTCCGAAGATGAGTTTGGTAAACCTGAAACAACATCTTTCTATCAACATTGAATGAATGCTTTCAGATTCAAAAATTTATTAAAGTAATTAATAGAGGCGACGGAAACTCGAGAGCTTTTTTCCCTTTTCTCTGATTTTCGTAGATGAAAACGTTTCAATTATTCTGGAAGGTACTTGAATTGATCCTTGCTGATCCATGACTGAATGATTTGGAAGTCGATTTGTGACCTCTGATGACATGCGGAAAGATCGTAGTTGTTGGAGAACATGCCTCAAATTTCGTTCATTCAATATCTACCAGAATAAAATTAAACTCACAGAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACTAAACTGATAGAAACCAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTCGGTCAGCATATTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>282</pcr_amplicon_size>
		<canonical_amplicon>CAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTTATTGTCTAAAATTTTGTCAGCTGGGGGAAAATGACGACAATATTTGTAGGTTACGGTAGTTCTCGTTGTTGGACAGCCACGGCCTCCTCATGAAAATATGCTGACCGAA</canonical_amplicon>
		<polymorphic_amplicon>CAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTRAAAGTATTTTTATTTACCGAATTTATTGTCTAAAATTTTGTCAGCTGGGGGAAAATGACGACAATATTTGTAGGTTACGGTAGTTCTCGTTGTTGGACAGCCACGGCCTCCTCATGAAAATATGCTGACCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37001</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>208517</contig_pos>
        <strand></strand>
        <context>cgaatttatt[G/A]tctaaaattt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACAATGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTTATT</left_flank>
        <right_flank>TCTAAAATTTTGTCAGCTGGGGGAAAATGACGACAATATTTGTAGGTTAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTTATTGTCTAAAATTTTGTCAGCTGGGGGAAAATGACGACAATATTTGTAGGTTACGGTAGTTCTCGTTGTTGGACAGCCACGGCCTCCTCATGAAAATATGCTGACCGAACTAAAAATCTAATTTTTGTACTCCGATTGTTCGTATCATGTACTCCGAAGATGAGTTTGGTAAACCTGAAACAACATCTTTCTATCAACATTGAATGAATGCTTTCAGATTCAAAAATTTATTAAAGTAATTAATAGAGGCGACGGAAACTCGAGAGCTTTTTTCCCTTTTCTCTGATTTTCGTAGATGAAAACGTTTCAATTATTCTGGAAGGTACTTGAATTGATCCTTGCTGATCCATGACTGAATGATTTGGAAGTCGATTTGTGACCTCTGATGACATGCGGAAAGATCGTAGTTGTTGGAGAACATGCCTCAAATTTCGTTCATTCAATATCTACCAGAATAAAATTAAACTCACAGAAAGACCATGTTGTTCTAACTCCTTGGTTTGC</canonical>
            <polymorphic>CTGAGTTTTGAAAAACCCCAGTTTCCTAAAATACATGGAGATATCATAAAGACATTTTCGCTTGACAGAATTGCAGAAAAAACACAGTACAGGACAAAACTTTTTAATATTTACTTGAAACATTGGAGCATTGGTGACGATTCCTCAAAATAGTTCAAGTCCATTCCAGATATTTCAGGAATTCCGACTCCCGACTTTCGAGTTAGAAAAGTTCATTTGCTGAAATCTCTTGTTAACTCTAAAAATTTCAGAACTTAAAAATATTTTCAGAGGTCTAAAGTTTAGATCCAAACAGAGATTTTTTTCGATTTTCGAAAACACCACAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTTATTRTCTAAAATTTTGTCAGCTGGGGGAAAATGACGACAATATTTGTAGGTTACGGTAGTTCTCGTTGTTGGACAGCCACGGCCTCCTCATGAAAATATGCTGACCGAACTAAAAATCTAATTTTTGTACTCCGATTGTTCGTATCATGTACTCCGAAGATGAGTTTGGTAAACCTGAAACAACATCTTTCTATCAACATTGAATGAATGCTTTCAGATTCAAAAATTTATTAAAGTAATTAATAGAGGCGACGGAAACTCGAGAGCTTTTTTCCCTTTTCTCTGATTTTCGTAGATGAAAACGTTTCAATTATTCTGGAAGGTACTTGAATTGATCCTTGCTGATCCATGACTGAATGATTTGGAAGTCGATTTGTGACCTCTGATGACATGCGGAAAGATCGTAGTTGTTGGAGAACATGCCTCAAATTTCGTTCATTCAATATCTACCAGAATAAAATTAAACTCACAGAAAGACCATGTTGTTCTAACTCCTTGGTTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACTAAACTGATAGAAACCAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTCGGTCAGCATATTTTCAT</pcr_primer_p2>
		<pcr_amplicon_size>282</pcr_amplicon_size>
		<canonical_amplicon>CAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTTATTGTCTAAAATTTTGTCAGCTGGGGGAAAATGACGACAATATTTGTAGGTTACGGTAGTTCTCGTTGTTGGACAGCCACGGCCTCCTCATGAAAATATGCTGACCGAA</canonical_amplicon>
		<polymorphic_amplicon>CAACTAAACTGATAGAAACCAAGAGAAATACAAAAACTAAAATATTAATAATGTAATTCACATTATTCTGGTACGAAACATCGGAGCTGTGGAAGAGAAATGTCGGTAGCCATGGAAGAAAGTCCCACAATGACAACTACCGTAACCTAAAAGTATTTTTATTTACCGAATTTATTRTCTAAAATTTTGTCAGCTGGGGGAAAATGACGACAATATTTGTAGGTTACGGTAGTTCTCGTTGTTGGACAGCCACGGCCTCCTCATGAAAATATGCTGACCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37002</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>210766</contig_pos>
        <strand>+</strand>
        <context>ACCTGCAAAG[A/T]AGTGATAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAAATATGCAGACAACACTGCCAACGCTTAACCTATACAACCTGCAAAG</left_flank>
        <right_flank>AGTGATAACATCCAGAAGCTCACAGGCCCCTCGAAGCGCCCATTTCACAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAACATTTGAAAACATCACAAGGTTTAAATTGTTAAAATTAGATGTTCGTCTTGTATCCAGTTCAAAAGATCACGTTTTTCAGCGAATATGACAACTTATAATTTCATTAAATTCCTGACCGGGCAAAAATCATGACCACAAGTTCAATTAAGTTGATAAACAGTTCTTCTTCTAATAGAAGCCCACTTACAAGAGAAACTTTGAGCTCAATTATCTCGATTCCTAAACGAACAGAAAAAATGTGTCAACTAATAAATTACTTATCATAATATCAAAAATATTTTATCAGTTGACAAAATTTTGATATCGTTTACAGGAATCCAGATAAATGACCTCAAAGTTGACTATATTCATTTCCACACATCTGCCAGCTGATCCCGATTGCTTTTAGTTTTTTTTAAATGTTGTGACTGAAAGAATTCCAAATGACGTGACCTATCACACTTGAAATATGCAGACAACACTGCCAACGCTTAACCTATACAACCTGCAAAGAAGTGATAACATCCAGAAGCTCACAGGCCCCTCGAAGCGCCCATTTCACAATTTTGTCGTTTATTGGAAAAAGCAAGGAATCTCGACAGCACAAAAAAGTCAATTTCGAGTCAAAGAAAAGATAAAAATGAGCGAAGAGAAAAAAGTTCCGCCCGTAAATCGCCTTCATTGTTTCTGAGAGTCAAGAAGACGTTGCGTCAAAGAAGTCGTGAGAGTCATGACGGAAAGAAGAAAACCACGACGTCCAAGAATTCGGAGTGAGTTGGAAACTAGAATTCTATGAATCTATGGTAGAATTTTCAGACGATCAAAATGGGATTTCCCTTCGAGATTTCTCAAATCGAAAATGAGAAATCGGAAGAGATCGTCCGACAGAAATAAGAGTATTTGCAGTAGAACACAGAAGACTAATTCGGTAACTGAAAAATTAATAATTAAAATCTGGATATTCATTTTTAGAAGGAAATGAACACAAGCAGAAGCAGCCATTCTCGAGAAGCT</canonical>
            <polymorphic>GAAAAACATTTGAAAACATCACAAGGTTTAAATTGTTAAAATTAGATGTTCGTCTTGTATCCAGTTCAAAAGATCACGTTTTTCAGCGAATATGACAACTTATAATTTCATTAAATTCCTGACCGGGCAAAAATCATGACCACAAGTTCAATTAAGTTGATAAACAGTTCTTCTTCTAATAGAAGCCCACTTACAAGAGAAACTTTGAGCTCAATTATCTCGATTCCTAAACGAACAGAAAAAATGTGTCAACTAATAAATTACTTATCATAATATCAAAAATATTTTATCAGTTGACAAAATTTTGATATCGTTTACAGGAATCCAGATAAATGACCTCAAAGTTGACTATATTCATTTCCACACATCTGCCAGCTGATCCCGATTGCTTTTAGTTTTTTTTAAATGTTGTGACTGAAAGAATTCCAAATGACGTGACCTATCACACTTGAAATATGCAGACAACACTGCCAACGCTTAACCTATACAACCTGCAAAGWAGTGATAACATCCAGAAGCTCACAGGCCCCTCGAAGCGCCCATTTCACAATTTTGTCGTTTATTGGAAAAAGCAAGGAATCTCGACAGCACAAAAAAGTCAATTTCGAGTCAAAGAAAAGATAAAAATGAGCGAAGAGAAAAAAGTTCCGCCCGTAAATCGCCTTCATTGTTTCTGAGAGTCAAGAAGACGTTGCGTCAAAGAAGTCGTGAGAGTCATGACGGAAAGAAGAAAACCACGACGTCCAAGAATTCGGAGTGAGTTGGAAACTAGAATTCTATGAATCTATGGTAGAATTTTCAGACGATCAAAATGGGATTTCCCTTCGAGATTTCTCAAATCGAAAATGAGAAATCGGAAGAGATCGTCCGACAGAAATAAGAGTATTTGCAGTAGAACACAGAAGACTAATTCGGTAACTGAAAAATTAATAATTAAAATCTGGATATTCATTTTTAGAAGGAAATGAACACAAGCAGAAGCAGCCATTCTCGAGAAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCTATCACACTTGAAATATGC</pcr_primer_p1>
		<pcr_primer_p2>CTTGACTCTCAGAAACAATGAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GACCTATCACACTTGAAATATGCAGACAACACTGCCAACGCTTAACCTATACAACCTGCAAAGAAGTGATAACATCCAGAAGCTCACAGGCCCCTCGAAGCGCCCATTTCACAATTTTGTCGTTTATTGGAAAAAGCAAGGAATCTCGACAGCACAAAAAAGTCAATTTCGAGTCAAAGAAAAGATAAAAATGAGCGAAGAGAAAAAAGTTCCGCCCGTAAATCGCCTTCATTGTTTCTGAGAGTCAAG</canonical_amplicon>
		<polymorphic_amplicon>GACCTATCACACTTGAAATATGCAGACAACACTGCCAACGCTTAACCTATACAACCTGCAAAGWAGTGATAACATCCAGAAGCTCACAGGCCCCTCGAAGCGCCCATTTCACAATTTTGTCGTTTATTGGAAAAAGCAAGGAATCTCGACAGCACAAAAAAGTCAATTTCGAGTCAAAGAAAAGATAAAAATGAGCGAAGAGAAAAAAGTTCCGCCCGTAAATCGCCTTCATTGTTTCTGAGAGTCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37003</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>210839</contig_pos>
        <strand>+</strand>
        <context>TTGGAAAAAG[A/C]AAGGAATCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAGGCCCCTCGAAGCGCCCATTTCACAATTTTGTCGTTTATTGGAAAAAG</left_flank>
        <right_flank>AAGGAATCTCGACAGCACAAAAAAGTCAATTTCGAGTCAAAGAAAAGATA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACGTTTTTCAGCGAATATGACAACTTATAATTTCATTAAATTCCTGACCGGGCAAAAATCATGACCACAAGTTCAATTAAGTTGATAAACAGTTCTTCTTCTAATAGAAGCCCACTTACAAGAGAAACTTTGAGCTCAATTATCTCGATTCCTAAACGAACAGAAAAAATGTGTCAACTAATAAATTACTTATCATAATATCAAAAATATTTTATCAGTTGACAAAATTTTGATATCGTTTACAGGAATCCAGATAAATGACCTCAAAGTTGACTATATTCATTTCCACACATCTGCCAGCTGATCCCGATTGCTTTTAGTTTTTTTTAAATGTTGTGACTGAAAGAATTCCAAATGACGTGACCTATCACACTTGAAATATGCAGACAACACTGCCAACGCTTAACCTATACAACCTGCAAAGAAGTGATAACATCCAGAAGCTCACAGGCCCCTCGAAGCGCCCATTTCACAATTTTGTCGTTTATTGGAAAAAGCAAGGAATCTCGACAGCACAAAAAAGTCAATTTCGAGTCAAAGAAAAGATAAAAATGAGCGAAGAGAAAAAAGTTCCGCCCGTAAATCGCCTTCATTGTTTCTGAGAGTCAAGAAGACGTTGCGTCAAAGAAGTCGTGAGAGTCATGACGGAAAGAAGAAAACCACGACGTCCAAGAATTCGGAGTGAGTTGGAAACTAGAATTCTATGAATCTATGGTAGAATTTTCAGACGATCAAAATGGGATTTCCCTTCGAGATTTCTCAAATCGAAAATGAGAAATCGGAAGAGATCGTCCGACAGAAATAAGAGTATTTGCAGTAGAACACAGAAGACTAATTCGGTAACTGAAAAATTAATAATTAAAATCTGGATATTCATTTTTAGAAGGAAATGAACACAAGCAGAAGCAGCCATTCTCGAGAAGCTGATTCGAAAAGTCGGATGGAAATCGTTAACAGGTCGATTGATTTGGAAGAAGACGTCGGGACACCATCGTCGA</canonical>
            <polymorphic>TCACGTTTTTCAGCGAATATGACAACTTATAATTTCATTAAATTCCTGACCGGGCAAAAATCATGACCACAAGTTCAATTAAGTTGATAAACAGTTCTTCTTCTAATAGAAGCCCACTTACAAGAGAAACTTTGAGCTCAATTATCTCGATTCCTAAACGAACAGAAAAAATGTGTCAACTAATAAATTACTTATCATAATATCAAAAATATTTTATCAGTTGACAAAATTTTGATATCGTTTACAGGAATCCAGATAAATGACCTCAAAGTTGACTATATTCATTTCCACACATCTGCCAGCTGATCCCGATTGCTTTTAGTTTTTTTTAAATGTTGTGACTGAAAGAATTCCAAATGACGTGACCTATCACACTTGAAATATGCAGACAACACTGCCAACGCTTAACCTATACAACCTGCAAAGAAGTGATAACATCCAGAAGCTCACAGGCCCCTCGAAGCGCCCATTTCACAATTTTGTCGTTTATTGGAAAAAGMAAGGAATCTCGACAGCACAAAAAAGTCAATTTCGAGTCAAAGAAAAGATAAAAATGAGCGAAGAGAAAAAAGTTCCGCCCGTAAATCGCCTTCATTGTTTCTGAGAGTCAAGAAGACGTTGCGTCAAAGAAGTCGTGAGAGTCATGACGGAAAGAAGAAAACCACGACGTCCAAGAATTCGGAGTGAGTTGGAAACTAGAATTCTATGAATCTATGGTAGAATTTTCAGACGATCAAAATGGGATTTCCCTTCGAGATTTCTCAAATCGAAAATGAGAAATCGGAAGAGATCGTCCGACAGAAATAAGAGTATTTGCAGTAGAACACAGAAGACTAATTCGGTAACTGAAAAATTAATAATTAAAATCTGGATATTCATTTTTAGAAGGAAATGAACACAAGCAGAAGCAGCCATTCTCGAGAAGCTGATTCGAAAAGTCGGATGGAAATCGTTAACAGGTCGATTGATTTGGAAGAAGACGTCGGGACACCATCGTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCTATCACACTTGAAATATGC</pcr_primer_p1>
		<pcr_primer_p2>CTTGACTCTCAGAAACAATGAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GACCTATCACACTTGAAATATGCAGACAACACTGCCAACGCTTAACCTATACAACCTGCAAAGAAGTGATAACATCCAGAAGCTCACAGGCCCCTCGAAGCGCCCATTTCACAATTTTGTCGTTTATTGGAAAAAGCAAGGAATCTCGACAGCACAAAAAAGTCAATTTCGAGTCAAAGAAAAGATAAAAATGAGCGAAGAGAAAAAAGTTCCGCCCGTAAATCGCCTTCATTGTTTCTGAGAGTCAAG</canonical_amplicon>
		<polymorphic_amplicon>GACCTATCACACTTGAAATATGCAGACAACACTGCCAACGCTTAACCTATACAACCTGCAAAGAAGTGATAACATCCAGAAGCTCACAGGCCCCTCGAAGCGCCCATTTCACAATTTTGTCGTTTATTGGAAAAAGMAAGGAATCTCGACAGCACAAAAAAGTCAATTTCGAGTCAAAGAAAAGATAAAAATGAGCGAAGAGAAAAAAGTTCCGCCCGTAAATCGCCTTCATTGTTTCTGAGAGTCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37004</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>210856</contig_pos>
        <strand>+</strand>
        <context>TCTCGACAGC[A/C]MAAAAAAGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCATTTCACAATTTTGTCGTTTATTGGAAAAAGCAAGGAATCTCGACAGC</left_flank>
        <right_flank>CAAAAAAGTCAATTTCGAGTCAAAGAAAAGATAAAAATGAGCGAAGAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGACAACTTATAATTTCATTAAATTCCTGACCGGGCAAAAATCATGACCACAAGTTCAATTAAGTTGATAAACAGTTCTTCTTCTAATAGAAGCCCACTTACAAGAGAAACTTTGAGCTCAATTATCTCGATTCCTAAACGAACAGAAAAAATGTGTCAACTAATAAATTACTTATCATAATATCAAAAATATTTTATCAGTTGACAAAATTTTGATATCGTTTACAGGAATCCAGATAAATGACCTCAAAGTTGACTATATTCATTTCCACACATCTGCCAGCTGATCCCGATTGCTTTTAGTTTTTTTTAAATGTTGTGACTGAAAGAATTCCAAATGACGTGACCTATCACACTTGAAATATGCAGACAACACTGCCAACGCTTAACCTATACAACCTGCAAAGAAGTGATAACATCCAGAAGCTCACAGGCCCCTCGAAGCGCCCATTTCACAATTTTGTCGTTTATTGGAAAAAGCAAGGAATCTCGACAGCACAAAAAAGTCAATTTCGAGTCAAAGAAAAGATAAAAATGAGCGAAGAGAAAAAAGTTCCGCCCGTAAATCGCCTTCATTGTTTCTGAGAGTCAAGAAGACGTTGCGTCAAAGAAGTCGTGAGAGTCATGACGGAAAGAAGAAAACCACGACGTCCAAGAATTCGGAGTGAGTTGGAAACTAGAATTCTATGAATCTATGGTAGAATTTTCAGACGATCAAAATGGGATTTCCCTTCGAGATTTCTCAAATCGAAAATGAGAAATCGGAAGAGATCGTCCGACAGAAATAAGAGTATTTGCAGTAGAACACAGAAGACTAATTCGGTAACTGAAAAATTAATAATTAAAATCTGGATATTCATTTTTAGAAGGAAATGAACACAAGCAGAAGCAGCCATTCTCGAGAAGCTGATTCGAAAAGTCGGATGGAAATCGTTAACAGGTCGATTGATTTGGAAGAAGACGTCGGGACACCATCGTCGACTGATTTGATGGCTGGA</canonical>
            <polymorphic>TATGACAACTTATAATTTCATTAAATTCCTGACCGGGCAAAAATCATGACCACAAGTTCAATTAAGTTGATAAACAGTTCTTCTTCTAATAGAAGCCCACTTACAAGAGAAACTTTGAGCTCAATTATCTCGATTCCTAAACGAACAGAAAAAATGTGTCAACTAATAAATTACTTATCATAATATCAAAAATATTTTATCAGTTGACAAAATTTTGATATCGTTTACAGGAATCCAGATAAATGACCTCAAAGTTGACTATATTCATTTCCACACATCTGCCAGCTGATCCCGATTGCTTTTAGTTTTTTTTAAATGTTGTGACTGAAAGAATTCCAAATGACGTGACCTATCACACTTGAAATATGCAGACAACACTGCCAACGCTTAACCTATACAACCTGCAAAGAAGTGATAACATCCAGAAGCTCACAGGCCCCTCGAAGCGCCCATTTCACAATTTTGTCGTTTATTGGAAAAAGCAAGGAATCTCGACAGCMCAAAAAAGTCAATTTCGAGTCAAAGAAAAGATAAAAATGAGCGAAGAGAAAAAAGTTCCGCCCGTAAATCGCCTTCATTGTTTCTGAGAGTCAAGAAGACGTTGCGTCAAAGAAGTCGTGAGAGTCATGACGGAAAGAAGAAAACCACGACGTCCAAGAATTCGGAGTGAGTTGGAAACTAGAATTCTATGAATCTATGGTAGAATTTTCAGACGATCAAAATGGGATTTCCCTTCGAGATTTCTCAAATCGAAAATGAGAAATCGGAAGAGATCGTCCGACAGAAATAAGAGTATTTGCAGTAGAACACAGAAGACTAATTCGGTAACTGAAAAATTAATAATTAAAATCTGGATATTCATTTTTAGAAGGAAATGAACACAAGCAGAAGCAGCCATTCTCGAGAAGCTGATTCGAAAAGTCGGATGGAAATCGTTAACAGGTCGATTGATTTGGAAGAAGACGTCGGGACACCATCGTCGACTGATTTGATGGCTGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>140 120 115 92 72 59 52 48 47 43 37 27 27 25 24 22 20 18 8 2 2</canonical_bands>
                <polymorphic_bands>163 140 115 92 72 59 52 48 47 37 27 27 25 24 22 20 18 8 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACCTATCACACTTGAAATATGC</pcr_primer_p1>
		<pcr_primer_p2>CTTGACTCTCAGAAACAATGAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GACCTATCACACTTGAAATATGCAGACAACACTGCCAACGCTTAACCTATACAACCTGCAAAGAAGTGATAACATCCAGAAGCTCACAGGCCCCTCGAAGCGCCCATTTCACAATTTTGTCGTTTATTGGAAAAAGCAAGGAATCTCGACAGCACAAAAAAGTCAATTTCGAGTCAAAGAAAAGATAAAAATGAGCGAAGAGAAAAAAGTTCCGCCCGTAAATCGCCTTCATTGTTTCTGAGAGTCAAG</canonical_amplicon>
		<polymorphic_amplicon>GACCTATCACACTTGAAATATGCAGACAACACTGCCAACGCTTAACCTATACAACCTGCAAAGAAGTGATAACATCCAGAAGCTCACAGGCCCCTCGAAGCGCCCATTTCACAATTTTGTCGTTTATTGGAAAAAGCAAGGAATCTCGACAGCMCAAAAAAGTCAATTTCGAGTCAAAGAAAAGATAAAAATGAGCGAAGAGAAAAAAGTTCCGCCCGTAAATCGCCTTCATTGTTTCTGAGAGTCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37005</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>210857</contig_pos>
        <strand>+</strand>
        <context>CTCGACAGCM[A/C]AAAAAAGTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATTTCACAATTTTGTCGTTTATTGGAAAAAGCAAGGAATCTCGACAGCA</left_flank>
        <right_flank>AAAAAAGTCAATTTCGAGTCAAAGAAAAGATAAAAATGAGCGAAGAGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGACAACTTATAATTTCATTAAATTCCTGACCGGGCAAAAATCATGACCACAAGTTCAATTAAGTTGATAAACAGTTCTTCTTCTAATAGAAGCCCACTTACAAGAGAAACTTTGAGCTCAATTATCTCGATTCCTAAACGAACAGAAAAAATGTGTCAACTAATAAATTACTTATCATAATATCAAAAATATTTTATCAGTTGACAAAATTTTGATATCGTTTACAGGAATCCAGATAAATGACCTCAAAGTTGACTATATTCATTTCCACACATCTGCCAGCTGATCCCGATTGCTTTTAGTTTTTTTTAAATGTTGTGACTGAAAGAATTCCAAATGACGTGACCTATCACACTTGAAATATGCAGACAACACTGCCAACGCTTAACCTATACAACCTGCAAAGAAGTGATAACATCCAGAAGCTCACAGGCCCCTCGAAGCGCCCATTTCACAATTTTGTCGTTTATTGGAAAAAGCAAGGAATCTCGACAGCACAAAAAAGTCAATTTCGAGTCAAAGAAAAGATAAAAATGAGCGAAGAGAAAAAAGTTCCGCCCGTAAATCGCCTTCATTGTTTCTGAGAGTCAAGAAGACGTTGCGTCAAAGAAGTCGTGAGAGTCATGACGGAAAGAAGAAAACCACGACGTCCAAGAATTCGGAGTGAGTTGGAAACTAGAATTCTATGAATCTATGGTAGAATTTTCAGACGATCAAAATGGGATTTCCCTTCGAGATTTCTCAAATCGAAAATGAGAAATCGGAAGAGATCGTCCGACAGAAATAAGAGTATTTGCAGTAGAACACAGAAGACTAATTCGGTAACTGAAAAATTAATAATTAAAATCTGGATATTCATTTTTAGAAGGAAATGAACACAAGCAGAAGCAGCCATTCTCGAGAAGCTGATTCGAAAAGTCGGATGGAAATCGTTAACAGGTCGATTGATTTGGAAGAAGACGTCGGGACACCATCGTCGACTGATTTGATGGCTGGAA</canonical>
            <polymorphic>ATGACAACTTATAATTTCATTAAATTCCTGACCGGGCAAAAATCATGACCACAAGTTCAATTAAGTTGATAAACAGTTCTTCTTCTAATAGAAGCCCACTTACAAGAGAAACTTTGAGCTCAATTATCTCGATTCCTAAACGAACAGAAAAAATGTGTCAACTAATAAATTACTTATCATAATATCAAAAATATTTTATCAGTTGACAAAATTTTGATATCGTTTACAGGAATCCAGATAAATGACCTCAAAGTTGACTATATTCATTTCCACACATCTGCCAGCTGATCCCGATTGCTTTTAGTTTTTTTTAAATGTTGTGACTGAAAGAATTCCAAATGACGTGACCTATCACACTTGAAATATGCAGACAACACTGCCAACGCTTAACCTATACAACCTGCAAAGAAGTGATAACATCCAGAAGCTCACAGGCCCCTCGAAGCGCCCATTTCACAATTTTGTCGTTTATTGGAAAAAGCAAGGAATCTCGACAGCAMAAAAAAGTCAATTTCGAGTCAAAGAAAAGATAAAAATGAGCGAAGAGAAAAAAGTTCCGCCCGTAAATCGCCTTCATTGTTTCTGAGAGTCAAGAAGACGTTGCGTCAAAGAAGTCGTGAGAGTCATGACGGAAAGAAGAAAACCACGACGTCCAAGAATTCGGAGTGAGTTGGAAACTAGAATTCTATGAATCTATGGTAGAATTTTCAGACGATCAAAATGGGATTTCCCTTCGAGATTTCTCAAATCGAAAATGAGAAATCGGAAGAGATCGTCCGACAGAAATAAGAGTATTTGCAGTAGAACACAGAAGACTAATTCGGTAACTGAAAAATTAATAATTAAAATCTGGATATTCATTTTTAGAAGGAAATGAACACAAGCAGAAGCAGCCATTCTCGAGAAGCTGATTCGAAAAGTCGGATGGAAATCGTTAACAGGTCGATTGATTTGGAAGAAGACGTCGGGACACCATCGTCGACTGATTTGATGGCTGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>140 120 115 92 72 59 51 48 47 43 37 28 27 25 24 22 20 18 8 2 2</canonical_bands>
                <polymorphic_bands>163 140 115 92 72 59 51 48 47 37 28 27 25 24 22 20 18 8 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACCTATCACACTTGAAATATGC</pcr_primer_p1>
		<pcr_primer_p2>CTTGACTCTCAGAAACAATGAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GACCTATCACACTTGAAATATGCAGACAACACTGCCAACGCTTAACCTATACAACCTGCAAAGAAGTGATAACATCCAGAAGCTCACAGGCCCCTCGAAGCGCCCATTTCACAATTTTGTCGTTTATTGGAAAAAGCAAGGAATCTCGACAGCACAAAAAAGTCAATTTCGAGTCAAAGAAAAGATAAAAATGAGCGAAGAGAAAAAAGTTCCGCCCGTAAATCGCCTTCATTGTTTCTGAGAGTCAAG</canonical_amplicon>
		<polymorphic_amplicon>GACCTATCACACTTGAAATATGCAGACAACACTGCCAACGCTTAACCTATACAACCTGCAAAGAAGTGATAACATCCAGAAGCTCACAGGCCCCTCGAAGCGCCCATTTCACAATTTTGTCGTTTATTGGAAAAAGCAAGGAATCTCGACAGCAMAAAAAAGTCAATTTCGAGTCAAAGAAAAGATAAAAATGAGCGAAGAGAAAAAAGTTCCGCCCGTAAATCGCCTTCATTGTTTCTGAGAGTCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37006</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>210889</contig_pos>
        <strand></strand>
        <context>AAGAAAAGAT[A/C]AAAATGAGCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAAGGAATCTCGACAGCACAAAAAAGTCAATTTCGAGTCAAAGAAAAGAT</left_flank>
        <right_flank>AAAATGAGCGAAGAGAAAAAAGTTCCGCCCGTAAATCGCCTTCATTGTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGGCAAAAATCATGACCACAAGTTCAATTAAGTTGATAAACAGTTCTTCTTCTAATAGAAGCCCACTTACAAGAGAAACTTTGAGCTCAATTATCTCGATTCCTAAACGAACAGAAAAAATGTGTCAACTAATAAATTACTTATCATAATATCAAAAATATTTTATCAGTTGACAAAATTTTGATATCGTTTACAGGAATCCAGATAAATGACCTCAAAGTTGACTATATTCATTTCCACACATCTGCCAGCTGATCCCGATTGCTTTTAGTTTTTTTTAAATGTTGTGACTGAAAGAATTCCAAATGACGTGACCTATCACACTTGAAATATGCAGACAACACTGCCAACGCTTAACCTATACAACCTGCAAAGAAGTGATAACATCCAGAAGCTCACAGGCCCCTCGAAGCGCCCATTTCACAATTTTGTCGTTTATTGGAAAAAGCAAGGAATCTCGACAGCACAAAAAAGTCAATTTCGAGTCAAAGAAAAGATAAAAATGAGCGAAGAGAAAAAAGTTCCGCCCGTAAATCGCCTTCATTGTTTCTGAGAGTCAAGAAGACGTTGCGTCAAAGAAGTCGTGAGAGTCATGACGGAAAGAAGAAAACCACGACGTCCAAGAATTCGGAGTGAGTTGGAAACTAGAATTCTATGAATCTATGGTAGAATTTTCAGACGATCAAAATGGGATTTCCCTTCGAGATTTCTCAAATCGAAAATGAGAAATCGGAAGAGATCGTCCGACAGAAATAAGAGTATTTGCAGTAGAACACAGAAGACTAATTCGGTAACTGAAAAATTAATAATTAAAATCTGGATATTCATTTTTAGAAGGAAATGAACACAAGCAGAAGCAGCCATTCTCGAGAAGCTGATTCGAAAAGTCGGATGGAAATCGTTAACAGGTCGATTGATTTGGAAGAAGACGTCGGGACACCATCGTCGACTGATTTGATGGCTGGAATAAGGAGAGAAGAGATGAGAGAAGCGGAAGAG</canonical>
            <polymorphic>CGGGCAAAAATCATGACCACAAGTTCAATTAAGTTGATAAACAGTTCTTCTTCTAATAGAAGCCCACTTACAAGAGAAACTTTGAGCTCAATTATCTCGATTCCTAAACGAACAGAAAAAATGTGTCAACTAATAAATTACTTATCATAATATCAAAAATATTTTATCAGTTGACAAAATTTTGATATCGTTTACAGGAATCCAGATAAATGACCTCAAAGTTGACTATATTCATTTCCACACATCTGCCAGCTGATCCCGATTGCTTTTAGTTTTTTTTAAATGTTGTGACTGAAAGAATTCCAAATGACGTGACCTATCACACTTGAAATATGCAGACAACACTGCCAACGCTTAACCTATACAACCTGCAAAGAAGTGATAACATCCAGAAGCTCACAGGCCCCTCGAAGCGCCCATTTCACAATTTTGTCGTTTATTGGAAAAAGCAAGGAATCTCGACAGCACAAAAAAGTCAATTTCGAGTCAAAGAAAAGATMAAAATGAGCGAAGAGAAAAAAGTTCCGCCCGTAAATCGCCTTCATTGTTTCTGAGAGTCAAGAAGACGTTGCGTCAAAGAAGTCGTGAGAGTCATGACGGAAAGAAGAAAACCACGACGTCCAAGAATTCGGAGTGAGTTGGAAACTAGAATTCTATGAATCTATGGTAGAATTTTCAGACGATCAAAATGGGATTTCCCTTCGAGATTTCTCAAATCGAAAATGAGAAATCGGAAGAGATCGTCCGACAGAAATAAGAGTATTTGCAGTAGAACACAGAAGACTAATTCGGTAACTGAAAAATTAATAATTAAAATCTGGATATTCATTTTTAGAAGGAAATGAACACAAGCAGAAGCAGCCATTCTCGAGAAGCTGATTCGAAAAGTCGGATGGAAATCGTTAACAGGTCGATTGATTTGGAAGAAGACGTCGGGACACCATCGTCGACTGATTTGATGGCTGGAATAAGGAGAGAAGAGATGAGAGAAGCGGAAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCTATCACACTTGAAATATGC</pcr_primer_p1>
		<pcr_primer_p2>CTTGACTCTCAGAAACAATGAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GACCTATCACACTTGAAATATGCAGACAACACTGCCAACGCTTAACCTATACAACCTGCAAAGAAGTGATAACATCCAGAAGCTCACAGGCCCCTCGAAGCGCCCATTTCACAATTTTGTCGTTTATTGGAAAAAGCAAGGAATCTCGACAGCACAAAAAAGTCAATTTCGAGTCAAAGAAAAGATAAAAATGAGCGAAGAGAAAAAAGTTCCGCCCGTAAATCGCCTTCATTGTTTCTGAGAGTCAAG</canonical_amplicon>
		<polymorphic_amplicon>GACCTATCACACTTGAAATATGCAGACAACACTGCCAACGCTTAACCTATACAACCTGCAAAGAAGTGATAACATCCAGAAGCTCACAGGCCCCTCGAAGCGCCCATTTCACAATTTTGTCGTTTATTGGAAAAAGCAAGGAATCTCGACAGCACAAAAAAGTCAATTTCGAGTCAAAGAAAAGATMAAAATGAGCGAAGAGAAAAAAGTTCCGCCCGTAAATCGCCTTCATTGTTTCTGAGAGTCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37007</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>246868</contig_pos>
        <strand>+</strand>
        <context>AAATCTGAAA[A/C]GCTCAAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGACAAGTGTAATGCGTTTGCAATTAATCAGGTTTGTTTAAAATCTGAAA</left_flank>
        <right_flank>GCTCAAATTTCTCCATTTTCAGCAACGAGCGATTTCGGTGGTTTTCGGAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCCCCTTCAATAAAACGGCCCCTCTAAAAGAAAAATTCCGTACATTTTCGGGAAATATTCCGGAAATGTTATAATTTCACCGAGAATTGTTGAAACACTATTTTGTGTTCACAACATTGCTCAATTTTAGTGAAATTGTTCATTAATCTTGAACGAGAGTCCTGAAAATTTTCGAGAAAAAACAGCCGAGAAAATAGAAAGGACCCCCGCCTATTGGAGGGCCCTTCGGAGATTTTTACGGTAACTTACTATAGTGCCAATAATTGCAGAATGTATTCAATGAACTTCCTCTCTGCGCTCGAGTCGGTCAGAAAATCCTATGTATGCACGGCGGAATCTCCCAAAACTGCAATTCATGGGAATCGTTCCGAAATCTCAAAAAACCAAACACACCAAAAACTTGTGACGAGGGACTTCAGGTGGATTTGATGTGGGCAGATCCGACACAAGACAAGTGTAATGCGTTTGCAATTAATCAGGTTTGTTTAAAATCTGAAAAGCTCAAATTTCTCCATTTTCAGCAACGAGCGATTTCGGTGGTTTTCGGAGAAAAAGCACTTACGGATTTCATGAAAAAGCTGGGATTATCGTTGATTGTGAGAGCTCATGAGGTGTCTCAAGATGGATTCAATTTCATGTTCAATCGGAAAATTGTGACTGTATTCTCGGCTCCCTATTACTGTGGAAATGATACAAACTGTGGAGCTATTATGCATATTTCTCCTTCCTATGAAATTTCGTTCACTGTCCTCCGTCCAAGAATGATTCAAACATCGGAAAATGCTGATGTGGTTAGACAGATGGAGAATAATTATAAGGATTTGATGGTTAAGAGTCCGGATCCAAGTAACACCATATTTCGTGCGTCATTGGATCCTAATTTTTAATGATTTTCAGATCGTGGACGTCATCTGACTCCTGCTCCAATCCCAGTTCAGCCAGTTTCAATTCCACCATTTATAGCCCCAGTTGCACCTGGTCCCCCGATTCAGATTCCTC</canonical>
            <polymorphic>GCCCCCTTCAATAAAACGGCCCCTCTAAAAGAAAAATTCCGTACATTTTCGGGAAATATTCCGGAAATGTTATAATTTCACCGAGAATTGTTGAAACACTATTTTGTGTTCACAACATTGCTCAATTTTAGTGAAATTGTTCATTAATCTTGAACGAGAGTCCTGAAAATTTTCGAGAAAAAACAGCCGAGAAAATAGAAAGGACCCCCGCCTATTGGAGGGCCCTTCGGAGATTTTTACGGTAACTTACTATAGTGCCAATAATTGCAGAATGTATTCAATGAACTTCCTCTCTGCGCTCGAGTCGGTCAGAAAATCCTATGTATGCACGGCGGAATCTCCCAAAACTGCAATTCATGGGAATCGTTCCGAAATCTCAAAAAACCAAACACACCAAAAACTTGTGACGAGGGACTTCAGGTGGATTTGATGTGGGCAGATCCGACACAAGACAAGTGTAATGCGTTTGCAATTAATCAGGTTTGTTTAAAATCTGAAAMGCTCAAATTTCTCCATTTTCAGCAACGAGCGATTTCGGTGGTTTTCGGAGAAAAAGCACTTACGGATTTCATGAAAAAGCTGGGATTATCGTTGATTGTGAGAGCTCATGAGGTGTCTCAAGATGGATTCAATTTCATGTTCAATCGGAAAATTGTGACTGTATTCTCGGCTCCCTATTACTGTGGAAATGATACAAACTGTGGAGCTATTATGCATATTTCTCCTTCCTATGAAATTTCGTTCACTGTCCTCCGTCCAAGAATGATTCAAACATCGGAAAATGCTGATGTGGTTAGACAGATGGAGAATAATTATAAGGATTTGATGGTTAAGAGTCCGGATCCAAGTAACACCATATTTCGTGCGTCATTGGATCCTAATTTTTAATGATTTTCAGATCGTGGACGTCATCTGACTCCTGCTCCAATCCCAGTTCAGCCAGTTTCAATTCCACCATTTATAGCCCCAGTTGCACCTGGTCCCCCGATTCAGATTCCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>501 294 102 78 25</canonical_bands>
                <polymorphic_bands>579 294 102 25</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>279 233 167 78 66 36 36 36 25 25 19</canonical_bands>
                <polymorphic_bands>357 233 167 66 36 36 36 25 25 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACACACCAAAAACTTGTGA</pcr_primer_p1>
		<pcr_primer_p2>GAAATTGAATCCATCTTGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACACACCAAAAACTTGTGACGAGGGACTTCAGGTGGATTTGATGTGGGCAGATCCGACACAAGACAAGTGTAATGCGTTTGCAATTAATCAGGTTTGTTTAAAATCTGAAAAGCTCAAATTTCTCCATTTTCAGCAACGAGCGATTTCGGTGGTTTTCGGAGAAAAAGCACTTACGGATTTCATGAAAAAGCTGGGATTATCGTTGATTGTGAGAGCTCATGAGGTGTCTCAAGATGGATTCAATTTC</canonical_amplicon>
		<polymorphic_amplicon>AAACACACCAAAAACTTGTGACGAGGGACTTCAGGTGGATTTGATGTGGGCAGATCCGACACAAGACAAGTGTAATGCGTTTGCAATTAATCAGGTTTGTTTAAAATCTGAAAMGCTCAAATTTCTCCATTTTCAGCAACGAGCGATTTCGGTGGTTTTCGGAGAAAAAGCACTTACGGATTTCATGAAAAAGCTGGGATTATCGTTGATTGTGAGAGCTCATGAGGTGTCTCAAGATGGATTCAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37008</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>247329</contig_pos>
        <strand>+</strand>
        <context>TCCACCATTT[A/C]TAGCCCCAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCTGACTCCTGCTCCAATCCCAGTTCAGCCAGTTTCAATTCCACCATTT</left_flank>
        <right_flank>TAGCCCCAGTTGCACCTGGTCCCCCGATTCAGATTCCTCCACTTATTTCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCGTTTGCAATTAATCAGGTTTGTTTAAAATCTGAAAAGCTCAAATTTCTCCATTTTCAGCAACGAGCGATTTCGGTGGTTTTCGGAGAAAAAGCACTTACGGATTTCATGAAAAAGCTGGGATTATCGTTGATTGTGAGAGCTCATGAGGTGTCTCAAGATGGATTCAATTTCATGTTCAATCGGAAAATTGTGACTGTATTCTCGGCTCCCTATTACTGTGGAAATGATACAAACTGTGGAGCTATTATGCATATTTCTCCTTCCTATGAAATTTCGTTCACTGTCCTCCGTCCAAGAATGATTCAAACATCGGAAAATGCTGATGTGGTTAGACAGATGGAGAATAATTATAAGGATTTGATGGTTAAGAGTCCGGATCCAAGTAACACCATATTTCGTGCGTCATTGGATCCTAATTTTTAATGATTTTCAGATCGTGGACGTCATCTGACTCCTGCTCCAATCCCAGTTCAGCCAGTTTCAATTCCACCATTTATAGCCCCAGTTGCACCTGGTCCCCCGATTCAGATTCCTCCACTTATTTCAGAAATGGTTGAAATGAAGAAATAGATTTATTATAAAAGCTTTTTCAATTTTGGCAAAGAATTAACATTAGAATTAGAGTTCAATACTTCCGACGCAGGTCGGATAATAGAATTCGACTCACTAGAGGGGAGAATTTTGGTTGGAAGATCATTGCAGTGATTCATAGAAATTATTGGGTTGGCAGCTGAGTGGGCACCAAGAGAACCAAGAACTTGAGATATTTCACTAGATACAGAAGAAGAAGAAGAAATAGTTGGATTTCTCTCGAGAACCAGAAAACTATCACATGGAGTAGGTACCGTATCGGTTTGAGAGAGGATTAGGAAATGGGAATTTGCATGAACAACAGAAAGGGGAATGTCAATTATGGATGCTAGGTGGAGAGTAATTTGGGTCGTTGAAGCACGCGATGCATGACCGATTATTGATTTTCGTTGGTCGTCAGTTGAG</canonical>
            <polymorphic>TGCGTTTGCAATTAATCAGGTTTGTTTAAAATCTGAAAAGCTCAAATTTCTCCATTTTCAGCAACGAGCGATTTCGGTGGTTTTCGGAGAAAAAGCACTTACGGATTTCATGAAAAAGCTGGGATTATCGTTGATTGTGAGAGCTCATGAGGTGTCTCAAGATGGATTCAATTTCATGTTCAATCGGAAAATTGTGACTGTATTCTCGGCTCCCTATTACTGTGGAAATGATACAAACTGTGGAGCTATTATGCATATTTCTCCTTCCTATGAAATTTCGTTCACTGTCCTCCGTCCAAGAATGATTCAAACATCGGAAAATGCTGATGTGGTTAGACAGATGGAGAATAATTATAAGGATTTGATGGTTAAGAGTCCGGATCCAAGTAACACCATATTTCGTGCGTCATTGGATCCTAATTTTTAATGATTTTCAGATCGTGGACGTCATCTGACTCCTGCTCCAATCCCAGTTCAGCCAGTTTCAATTCCACCATTTMTAGCCCCAGTTGCACCTGGTCCCCCGATTCAGATTCCTCCACTTATTTCAGAAATGGTTGAAATGAAGAAATAGATTTATTATAAAAGCTTTTTCAATTTTGGCAAAGAATTAACATTAGAATTAGAGTTCAATACTTCCGACGCAGGTCGGATAATAGAATTCGACTCACTAGAGGGGAGAATTTTGGTTGGAAGATCATTGCAGTGATTCATAGAAATTATTGGGTTGGCAGCTGAGTGGGCACCAAGAGAACCAAGAACTTGAGATATTTCACTAGATACAGAAGAAGAAGAAGAAATAGTTGGATTTCTCTCGAGAACCAGAAAACTATCACATGGAGTAGGTACCGTATCGGTTTGAGAGAGGATTAGGAAATGGGAATTTGCATGAACAACAGAAAGGGGAATGTCAATTATGGATGCTAGGTGGAGAGTAATTTGGGTCGTTGAAGCACGCGATGCATGACCGATTATTGATTTTCGTTGGTCGTCAGTTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTTAGACAGATGGAGAATAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTCATTTCAACCATTTCT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TGGTTAGACAGATGGAGAATAATTATAAGGATTTGATGGTTAAGAGTCCGGATCCAAGTAACACCATATTTCGTGCGTCATTGGATCCTAATTTTTAATGATTTTCAGATCGTGGACGTCATCTGACTCCTGCTCCAATCCCAGTTCAGCCAGTTTCAATTCCACCATTTATAGCCCCAGTTGCACCTGGTCCCCCGATTCAGATTCCTCCACTTATTTCAGAAATGGTTGAAATGAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TGGTTAGACAGATGGAGAATAATTATAAGGATTTGATGGTTAAGAGTCCGGATCCAAGTAACACCATATTTCGTGCGTCATTGGATCCTAATTTTTAATGATTTTCAGATCGTGGACGTCATCTGACTCCTGCTCCAATCCCAGTTCAGCCAGTTTCAATTCCACCATTTMTAGCCCCAGTTGCACCTGGTCCCCCGATTCAGATTCCTCCACTTATTTCAGAAATGGTTGAAATGAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37009</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>249297</contig_pos>
        <strand>+</strand>
        <context>GTAACTTTTT[C/G]GACAATTGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTGGCTCAGGACTGGAAAAGCAAAACGCGTTTTTGATTTTGTAACTTTTT</left_flank>
        <right_flank>GACAATTGAACCATTTTTAACTTAATTTGTTTATTGATCAGGTGTAATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAACATCAGAAGTTCTGGGAATGGCAATATTTGAAATCATTTTCTCTCCGTAATCTCTCAACATCAACCATCCATTTCTTATCAAAGATTCCAGAGGATCAACACGTTCAGTTAAAACTTGAAAATGCCAAAATAGGTAGAAATACAGCAAAAACGTTCTTTTCATGACATAGCAGTATTGCGTAATATGGAAGAAGGAGAAAAATAGAAAGTAACGGGAAAAGTTGGTGATCCGAGGGCGAAAAACCGGATACTTGGATAAAGAGAGCAATTAGTAGTGTAGTTACTGGCTGGTAGAGTATGGATATGTATAGCAGATGAACAAAAAAATCAAAAGGAAGTTTGCTTGAAAAATTGATCAGAGCTAGTCAGCTCCGTTTGAAAAATTAGGAGAAGGCTAAAAAAAGTGCTTTTTGAGTTGAGAATTTTAGTAAAATTCCACAAGGATGTGGCTCAGGACTGGAAAAGCAAAACGCGTTTTTGATTTTGTAACTTTTTCGACAATTGAACCATTTTTAACTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAAATGTAACCGGTAGAAAAAGAAAATGGCGTTTTCAAGGATTTCGATTTTTTTGGATTGTTTCTAATTAAAATTATGTCAGTACATAACTTTCGAAGCATTTCAATTTAAAAAAAACGTCTTTCTTTGAATAAAGAAAGCTGACGAGGCTAAAAATCATAGGATTTTTTCTTTCGTAAAAAATTTAATGAGCACATTTCAACCCCAATTATGTTTTGTTCCAGAGCCAGGTACCTGAAAAAGCACGATTTGTTGATCAAAATTCCACCAACTCAAATAACATATAATCAAATCTCCTGCCTAAACCTAACAACCACTCAACTTCACAATTCATTCTCCAAAAAAAA</canonical>
            <polymorphic>GGAACATCAGAAGTTCTGGGAATGGCAATATTTGAAATCATTTTCTCTCCGTAATCTCTCAACATCAACCATCCATTTCTTATCAAAGATTCCAGAGGATCAACACGTTCAGTTAAAACTTGAAAATGCCAAAATAGGTAGAAATACAGCAAAAACGTTCTTTTCATGACATAGCAGTATTGCGTAATATGGAAGAAGGAGAAAAATAGAAAGTAACGGGAAAAGTTGGTGATCCGAGGGCGAAAAACCGGATACTTGGATAAAGAGAGCAATTAGTAGTGTAGTTACTGGCTGGTAGAGTATGGATATGTATAGCAGATGAACAAAAAAATCAAAAGGAAGTTTGCTTGAAAAATTGATCAGAGCTAGTCAGCTCCGTTTGAAAAATTAGGAGAAGGCTAAAAAAAGTGCTTTTTGAGTTGAGAATTTTAGTAAAATTCCACAAGGATGTGGCTCAGGACTGGAAAAGCAAAACGCGTTTTTGATTTTGTAACTTTTTSGACAATTGAACCATTTTTAACTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAAATGTAACCGGTAGAAAAAGAAAATGGCGTTTTCAAGGATTTCGATTTTTTTGGATTGTTTCTAATTAAAATTATGTCAGTACATAACTTTCGAAGCATTTCAATTTAAAAAAAACGTCTTTCTTTGAATAAAGAAAGCTGACGAGGCTAAAAATCATAGGATTTTTTCTTTCGTAAAAAATTTAATGAGCACATTTCAACCCCAATTATGTTTTGTTCCAGAGCCAGGTACCTGAAAAAGCACGATTTGTTGATCAAAATTCCACCAACTCAAATAACATATAATCAAATCTCCTGCCTAAACCTAACAACCACTCAACTTCACAATTCATTCTCCAAAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 253 198 49</canonical_bands>
                <polymorphic_bands>698 253 49</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGTTTGCTTGAAAAATTGAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTGAGTCTTTCATGTCCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAAGTTTGCTTGAAAAATTGATCAGAGCTAGTCAGCTCCGTTTGAAAAATTAGGAGAAGGCTAAAAAAAGTGCTTTTTGAGTTGAGAATTTTAGTAAAATTCCACAAGGATGTGGCTCAGGACTGGAAAAGCAAAACGCGTTTTTGATTTTGTAACTTTTTCGACAATTGAACCATTTTTAACTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAAGTTTGCTTGAAAAATTGATCAGAGCTAGTCAGCTCCGTTTGAAAAATTAGGAGAAGGCTAAAAAAAGTGCTTTTTGAGTTGAGAATTTTAGTAAAATTCCACAAGGATGTGGCTCAGGACTGGAAAAGCAAAACGCGTTTTTGATTTTGTAACTTTTTSGACAATTGAACCATTTTTAACTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37010</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>249453</contig_pos>
        <strand>+</strand>
        <context>ACACAGGAAA[A/G]ATGTAACCGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAA</left_flank>
        <right_flank>ATGTAACCGGTAGAAAAAGAAAATGGCGTTTTCAAGGATTTCGATTTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCTTTTCATGACATAGCAGTATTGCGTAATATGGAAGAAGGAGAAAAATAGAAAGTAACGGGAAAAGTTGGTGATCCGAGGGCGAAAAACCGGATACTTGGATAAAGAGAGCAATTAGTAGTGTAGTTACTGGCTGGTAGAGTATGGATATGTATAGCAGATGAACAAAAAAATCAAAAGGAAGTTTGCTTGAAAAATTGATCAGAGCTAGTCAGCTCCGTTTGAAAAATTAGGAGAAGGCTAAAAAAAGTGCTTTTTGAGTTGAGAATTTTAGTAAAATTCCACAAGGATGTGGCTCAGGACTGGAAAAGCAAAACGCGTTTTTGATTTTGTAACTTTTTCGACAATTGAACCATTTTTAACTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAAATGTAACCGGTAGAAAAAGAAAATGGCGTTTTCAAGGATTTCGATTTTTTTGGATTGTTTCTAATTAAAATTATGTCAGTACATAACTTTCGAAGCATTTCAATTTAAAAAAAACGTCTTTCTTTGAATAAAGAAAGCTGACGAGGCTAAAAATCATAGGATTTTTTCTTTCGTAAAAAATTTAATGAGCACATTTCAACCCCAATTATGTTTTGTTCCAGAGCCAGGTACCTGAAAAAGCACGATTTGTTGATCAAAATTCCACCAACTCAAATAACATATAATCAAATCTCCTGCCTAAACCTAACAACCACTCAACTTCACAATTCATTCTCCAAAAAAAAAGGAAAAAATGGATTGCTCGAGTTCGGAGAAAGATGAATATTTTTGGATATTACATTTTGTGTTAATACTTTCTCTTCCCGTTTATATTGTCGCAATTATCGCACTGTTGCAAACCAAATCCACGTATTTCGAAACCTATAAACTATTTTTGATCT</canonical>
            <polymorphic>GTTCTTTTCATGACATAGCAGTATTGCGTAATATGGAAGAAGGAGAAAAATAGAAAGTAACGGGAAAAGTTGGTGATCCGAGGGCGAAAAACCGGATACTTGGATAAAGAGAGCAATTAGTAGTGTAGTTACTGGCTGGTAGAGTATGGATATGTATAGCAGATGAACAAAAAAATCAAAAGGAAGTTTGCTTGAAAAATTGATCAGAGCTAGTCAGCTCCGTTTGAAAAATTAGGAGAAGGCTAAAAAAAGTGCTTTTTGAGTTGAGAATTTTAGTAAAATTCCACAAGGATGTGGCTCAGGACTGGAAAAGCAAAACGCGTTTTTGATTTTGTAACTTTTTCGACAATTGAACCATTTTTAACTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAARATGTAACCGGTAGAAAAAGAAAATGGCGTTTTCAAGGATTTCGATTTTTTTGGATTGTTTCTAATTAAAATTATGTCAGTACATAACTTTCGAAGCATTTCAATTTAAAAAAAACGTCTTTCTTTGAATAAAGAAAGCTGACGAGGCTAAAAATCATAGGATTTTTTCTTTCGTAAAAAATTTAATGAGCACATTTCAACCCCAATTATGTTTTGTTCCAGAGCCAGGTACCTGAAAAAGCACGATTTGTTGATCAAAATTCCACCAACTCAAATAACATATAATCAAATCTCCTGCCTAAACCTAACAACCACTCAACTTCACAATTCATTCTCCAAAAAAAAAGGAAAAAATGGATTGCTCGAGTTCGGAGAAAGATGAATATTTTTGGATATTACATTTTGTGTTAATACTTTCTCTTCCCGTTTATATTGTCGCAATTATCGCACTGTTGCAAACCAAATCCACGTATTTCGAAACCTATAAACTATTTTTGATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGACATGAAAGACTCAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTATGATTTTTAGCCTCGTCAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAAATGTAACCGGTAGAAAAAGAAAATGGCGTTTTCAAGGATTTCGATTTTTTTGGATTGTTTCTAATTAAAATTATGTCAGTACATAACTTTCGAAGCATTTCAATTTAAAAAAAACGTCTTTCTTTGAATAAAGAAAGCTGACGAGGCTAAAAATCATAG</canonical_amplicon>
		<polymorphic_amplicon>GGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAARATGTAACCGGTAGAAAAAGAAAATGGCGTTTTCAAGGATTTCGATTTTTTTGGATTGTTTCTAATTAAAATTATGTCAGTACATAACTTTCGAAGCATTTCAATTTAAAAAAAACGTCTTTCTTTGAATAAAGAAAGCTGACGAGGCTAAAAATCATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37011</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>249495</contig_pos>
        <strand>+</strand>
        <context>TCAAGGATTT[C/T]GATTTTTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAGGAAAAATGTAACCGGTAGAAAAAGAAAATGGCGTTTTCAAGGATTT</left_flank>
        <right_flank>GATTTTTTTGGATTGTTTCTAATTAAAATTATGTCAGTACATAACTTTCG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAAAAATAGAAAGTAACGGGAAAAGTTGGTGATCCGAGGGCGAAAAACCGGATACTTGGATAAAGAGAGCAATTAGTAGTGTAGTTACTGGCTGGTAGAGTATGGATATGTATAGCAGATGAACAAAAAAATCAAAAGGAAGTTTGCTTGAAAAATTGATCAGAGCTAGTCAGCTCCGTTTGAAAAATTAGGAGAAGGCTAAAAAAAGTGCTTTTTGAGTTGAGAATTTTAGTAAAATTCCACAAGGATGTGGCTCAGGACTGGAAAAGCAAAACGCGTTTTTGATTTTGTAACTTTTTCGACAATTGAACCATTTTTAACTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAAATGTAACCGGTAGAAAAAGAAAATGGCGTTTTCAAGGATTTCGATTTTTTTGGATTGTTTCTAATTAAAATTATGTCAGTACATAACTTTCGAAGCATTTCAATTTAAAAAAAACGTCTTTCTTTGAATAAAGAAAGCTGACGAGGCTAAAAATCATAGGATTTTTTCTTTCGTAAAAAATTTAATGAGCACATTTCAACCCCAATTATGTTTTGTTCCAGAGCCAGGTACCTGAAAAAGCACGATTTGTTGATCAAAATTCCACCAACTCAAATAACATATAATCAAATCTCCTGCCTAAACCTAACAACCACTCAACTTCACAATTCATTCTCCAAAAAAAAAGGAAAAAATGGATTGCTCGAGTTCGGAGAAAGATGAATATTTTTGGATATTACATTTTGTGTTAATACTTTCTCTTCCCGTTTATATTGTCGCAATTATCGCACTGTTGCAAACCAAATCCACGTATTTCGAAACCTATAAACTATTTTTGATCTGGCACCCTTTGGGGTTGGTGGAAATTTGAGATATTTTACACA</canonical>
            <polymorphic>GAGAAAAATAGAAAGTAACGGGAAAAGTTGGTGATCCGAGGGCGAAAAACCGGATACTTGGATAAAGAGAGCAATTAGTAGTGTAGTTACTGGCTGGTAGAGTATGGATATGTATAGCAGATGAACAAAAAAATCAAAAGGAAGTTTGCTTGAAAAATTGATCAGAGCTAGTCAGCTCCGTTTGAAAAATTAGGAGAAGGCTAAAAAAAGTGCTTTTTGAGTTGAGAATTTTAGTAAAATTCCACAAGGATGTGGCTCAGGACTGGAAAAGCAAAACGCGTTTTTGATTTTGTAACTTTTTCGACAATTGAACCATTTTTAACTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAAATGTAACCGGTAGAAAAAGAAAATGGCGTTTTCAAGGATTTYGATTTTTTTGGATTGTTTCTAATTAAAATTATGTCAGTACATAACTTTCGAAGCATTTCAATTTAAAAAAAACGTCTTTCTTTGAATAAAGAAAGCTGACGAGGCTAAAAATCATAGGATTTTTTCTTTCGTAAAAAATTTAATGAGCACATTTCAACCCCAATTATGTTTTGTTCCAGAGCCAGGTACCTGAAAAAGCACGATTTGTTGATCAAAATTCCACCAACTCAAATAACATATAATCAAATCTCCTGCCTAAACCTAACAACCACTCAACTTCACAATTCATTCTCCAAAAAAAAAGGAAAAAATGGATTGCTCGAGTTCGGAGAAAGATGAATATTTTTGGATATTACATTTTGTGTTAATACTTTCTCTTCCCGTTTATATTGTCGCAATTATCGCACTGTTGCAAACCAAATCCACGTATTTCGAAACCTATAAACTATTTTTGATCTGGCACCCTTTGGGGTTGGTGGAAATTTGAGATATTTTACACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>302 272 198 112 67 49</canonical_bands>
                <polymorphic_bands>302 272 247 112 67</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGGATAATTTAGATATTTGACA</pcr_primer_p1>
		<pcr_primer_p2>AAACATAATTGGGGTTGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CGGGATAATTTAGATATTTGACACAGGAAAAATGTAACCGGTAGAAAAAGAAAATGGCGTTTTCAAGGATTTCGATTTTTTTGGATTGTTTCTAATTAAAATTATGTCAGTACATAACTTTCGAAGCATTTCAATTTAAAAAAAACGTCTTTCTTTGAATAAAGAAAGCTGACGAGGCTAAAAATCATAGGATTTTTTCTTTCGTAAAAAATTTAATGAGCACATTTCAACCCCAATTATGTTT</canonical_amplicon>
		<polymorphic_amplicon>CGGGATAATTTAGATATTTGACACAGGAAAAATGTAACCGGTAGAAAAAGAAAATGGCGTTTTCAAGGATTTYGATTTTTTTGGATTGTTTCTAATTAAAATTATGTCAGTACATAACTTTCGAAGCATTTCAATTTAAAAAAAACGTCTTTCTTTGAATAAAGAAAGCTGACGAGGCTAAAAATCATAGGATTTTTTCTTTCGTAAAAAATTTAATGAGCACATTTCAACCCCAATTATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37012</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>249544</contig_pos>
        <strand>+</strand>
        <context>ACATAACTTT[C/G]GAAGCATTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCGATTTTTTTGGATTGTTTCTAATTAAAATTATGTCAGTACATAACTTT</left_flank>
        <right_flank>GAAGCATTTCAATTTAAAAAAAACGTCTTTCTTTGAATAAAGAAAGCTGA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGGATACTTGGATAAAGAGAGCAATTAGTAGTGTAGTTACTGGCTGGTAGAGTATGGATATGTATAGCAGATGAACAAAAAAATCAAAAGGAAGTTTGCTTGAAAAATTGATCAGAGCTAGTCAGCTCCGTTTGAAAAATTAGGAGAAGGCTAAAAAAAGTGCTTTTTGAGTTGAGAATTTTAGTAAAATTCCACAAGGATGTGGCTCAGGACTGGAAAAGCAAAACGCGTTTTTGATTTTGTAACTTTTTCGACAATTGAACCATTTTTAACTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAAATGTAACCGGTAGAAAAAGAAAATGGCGTTTTCAAGGATTTCGATTTTTTTGGATTGTTTCTAATTAAAATTATGTCAGTACATAACTTTCGAAGCATTTCAATTTAAAAAAAACGTCTTTCTTTGAATAAAGAAAGCTGACGAGGCTAAAAATCATAGGATTTTTTCTTTCGTAAAAAATTTAATGAGCACATTTCAACCCCAATTATGTTTTGTTCCAGAGCCAGGTACCTGAAAAAGCACGATTTGTTGATCAAAATTCCACCAACTCAAATAACATATAATCAAATCTCCTGCCTAAACCTAACAACCACTCAACTTCACAATTCATTCTCCAAAAAAAAAGGAAAAAATGGATTGCTCGAGTTCGGAGAAAGATGAATATTTTTGGATATTACATTTTGTGTTAATACTTTCTCTTCCCGTTTATATTGTCGCAATTATCGCACTGTTGCAAACCAAATCCACGTATTTCGAAACCTATAAACTATTTTTGATCTGGCACCCTTTGGGGTTGGTGGAAATTTGAGATATTTTACACATCCGCTTTTTCAGAAATCTTCTTGCTGAAATTTTGAATTCCTGGTTCCT</canonical>
            <polymorphic>CCGGATACTTGGATAAAGAGAGCAATTAGTAGTGTAGTTACTGGCTGGTAGAGTATGGATATGTATAGCAGATGAACAAAAAAATCAAAAGGAAGTTTGCTTGAAAAATTGATCAGAGCTAGTCAGCTCCGTTTGAAAAATTAGGAGAAGGCTAAAAAAAGTGCTTTTTGAGTTGAGAATTTTAGTAAAATTCCACAAGGATGTGGCTCAGGACTGGAAAAGCAAAACGCGTTTTTGATTTTGTAACTTTTTCGACAATTGAACCATTTTTAACTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAAATGTAACCGGTAGAAAAAGAAAATGGCGTTTTCAAGGATTTCGATTTTTTTGGATTGTTTCTAATTAAAATTATGTCAGTACATAACTTTSGAAGCATTTCAATTTAAAAAAAACGTCTTTCTTTGAATAAAGAAAGCTGACGAGGCTAAAAATCATAGGATTTTTTCTTTCGTAAAAAATTTAATGAGCACATTTCAACCCCAATTATGTTTTGTTCCAGAGCCAGGTACCTGAAAAAGCACGATTTGTTGATCAAAATTCCACCAACTCAAATAACATATAATCAAATCTCCTGCCTAAACCTAACAACCACTCAACTTCACAATTCATTCTCCAAAAAAAAAGGAAAAAATGGATTGCTCGAGTTCGGAGAAAGATGAATATTTTTGGATATTACATTTTGTGTTAATACTTTCTCTTCCCGTTTATATTGTCGCAATTATCGCACTGTTGCAAACCAAATCCACGTATTTCGAAACCTATAAACTATTTTTGATCTGGCACCCTTTGGGGTTGGTGGAAATTTGAGATATTTTACACATCCGCTTTTTCAGAAATCTTCTTGCTGAAATTTTGAATTCCTGGTTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>499 384 117</canonical_bands>
                <polymorphic_bands>883 117</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>272 253 198 116 112 49</canonical_bands>
                <polymorphic_bands>321 253 198 116 112</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGGATAATTTAGATATTTGACA</pcr_primer_p1>
		<pcr_primer_p2>AAACATAATTGGGGTTGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CGGGATAATTTAGATATTTGACACAGGAAAAATGTAACCGGTAGAAAAAGAAAATGGCGTTTTCAAGGATTTCGATTTTTTTGGATTGTTTCTAATTAAAATTATGTCAGTACATAACTTTCGAAGCATTTCAATTTAAAAAAAACGTCTTTCTTTGAATAAAGAAAGCTGACGAGGCTAAAAATCATAGGATTTTTTCTTTCGTAAAAAATTTAATGAGCACATTTCAACCCCAATTATGTTT</canonical_amplicon>
		<polymorphic_amplicon>CGGGATAATTTAGATATTTGACACAGGAAAAATGTAACCGGTAGAAAAAGAAAATGGCGTTTTCAAGGATTTCGATTTTTTTGGATTGTTTCTAATTAAAATTATGTCAGTACATAACTTTSGAAGCATTTCAATTTAAAAAAAACGTCTTTCTTTGAATAAAGAAAGCTGACGAGGCTAAAAATCATAGGATTTTTTCTTTCGTAAAAAATTTAATGAGCACATTTCAACCCCAATTATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37013</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>249642</contig_pos>
        <strand>+</strand>
        <context>AATTTAATGA[A/G]CACATTTCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGACGAGGCTAAAAATCATAGGATTTTTTCTTTCGTAAAAAATTTAATGA</left_flank>
        <right_flank>CACATTTCAACCCCAATTATGTTTTGTTCCAGAGCCAGGTACCTGAAAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTTGAAAAATTGATCAGAGCTAGTCAGCTCCGTTTGAAAAATTAGGAGAAGGCTAAAAAAAGTGCTTTTTGAGTTGAGAATTTTAGTAAAATTCCACAAGGATGTGGCTCAGGACTGGAAAAGCAAAACGCGTTTTTGATTTTGTAACTTTTTCGACAATTGAACCATTTTTAACTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAAATGTAACCGGTAGAAAAAGAAAATGGCGTTTTCAAGGATTTCGATTTTTTTGGATTGTTTCTAATTAAAATTATGTCAGTACATAACTTTCGAAGCATTTCAATTTAAAAAAAACGTCTTTCTTTGAATAAAGAAAGCTGACGAGGCTAAAAATCATAGGATTTTTTCTTTCGTAAAAAATTTAATGAGCACATTTCAACCCCAATTATGTTTTGTTCCAGAGCCAGGTACCTGAAAAAGCACGATTTGTTGATCAAAATTCCACCAACTCAAATAACATATAATCAAATCTCCTGCCTAAACCTAACAACCACTCAACTTCACAATTCATTCTCCAAAAAAAAAGGAAAAAATGGATTGCTCGAGTTCGGAGAAAGATGAATATTTTTGGATATTACATTTTGTGTTAATACTTTCTCTTCCCGTTTATATTGTCGCAATTATCGCACTGTTGCAAACCAAATCCACGTATTTCGAAACCTATAAACTATTTTTGATCTGGCACCCTTTGGGGTTGGTGGAAATTTGAGATATTTTACACATCCGCTTTTTCAGAAATCTTCTTGCTGAAATTTTGAATTCCTGGTTCCTGGTTCCTGTCGTTCATCTTCCCCTTCCACTTCTCAGGTTTACTGGATTCCTCTCTCAGTGGGGATTCAGTGGTTTATTTCAATTTTTGATCATTGTGT</canonical>
            <polymorphic>GCTTGAAAAATTGATCAGAGCTAGTCAGCTCCGTTTGAAAAATTAGGAGAAGGCTAAAAAAAGTGCTTTTTGAGTTGAGAATTTTAGTAAAATTCCACAAGGATGTGGCTCAGGACTGGAAAAGCAAAACGCGTTTTTGATTTTGTAACTTTTTCGACAATTGAACCATTTTTAACTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAAATGTAACCGGTAGAAAAAGAAAATGGCGTTTTCAAGGATTTCGATTTTTTTGGATTGTTTCTAATTAAAATTATGTCAGTACATAACTTTCGAAGCATTTCAATTTAAAAAAAACGTCTTTCTTTGAATAAAGAAAGCTGACGAGGCTAAAAATCATAGGATTTTTTCTTTCGTAAAAAATTTAATGARCACATTTCAACCCCAATTATGTTTTGTTCCAGAGCCAGGTACCTGAAAAAGCACGATTTGTTGATCAAAATTCCACCAACTCAAATAACATATAATCAAATCTCCTGCCTAAACCTAACAACCACTCAACTTCACAATTCATTCTCCAAAAAAAAAGGAAAAAATGGATTGCTCGAGTTCGGAGAAAGATGAATATTTTTGGATATTACATTTTGTGTTAATACTTTCTCTTCCCGTTTATATTGTCGCAATTATCGCACTGTTGCAAACCAAATCCACGTATTTCGAAACCTATAAACTATTTTTGATCTGGCACCCTTTGGGGTTGGTGGAAATTTGAGATATTTTACACATCCGCTTTTTCAGAAATCTTCTTGCTGAAATTTTGAATTCCTGGTTCCTGGTTCCTGTCGTTCATCTTCCCCTTCCACTTCTCAGGTTTACTGGATTCCTCTCTCAGTGGGGATTCAGTGGTTTATTTCAATTTTTGATCATTGTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGACGAGGCTAAAAATCATAG</pcr_primer_p1>
		<pcr_primer_p2>AAATATTCATCTTTCTCCGAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGACGAGGCTAAAAATCATAGGATTTTTTCTTTCGTAAAAAATTTAATGAGCACATTTCAACCCCAATTATGTTTTGTTCCAGAGCCAGGTACCTGAAAAAGCACGATTTGTTGATCAAAATTCCACCAACTCAAATAACATATAATCAAATCTCCTGCCTAAACCTAACAACCACTCAACTTCACAATTCATTCTCCAAAAAAAAAGGAAAAAATGGATTGCTCGAGTTCGGAGAAAGATGAATATTT</canonical_amplicon>
		<polymorphic_amplicon>CTGACGAGGCTAAAAATCATAGGATTTTTTCTTTCGTAAAAAATTTAATGARCACATTTCAACCCCAATTATGTTTTGTTCCAGAGCCAGGTACCTGAAAAAGCACGATTTGTTGATCAAAATTCCACCAACTCAAATAACATATAATCAAATCTCCTGCCTAAACCTAACAACCACTCAACTTCACAATTCATTCTCCAAAAAAAAAGGAAAAAATGGATTGCTCGAGTTCGGAGAAAGATGAATATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37014</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>249699</contig_pos>
        <strand>+</strand>
        <context>AAAAGCACGA[G/T]TTGTTGATCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCAACCCCAATTATGTTTTGTTCCAGAGCCAGGTACCTGAAAAAGCACGA</left_flank>
        <right_flank>TTGTTGATCAAAATTCCACCAACTCAAATAACATATAATCAAATCTCCTG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAGTGCTTTTTGAGTTGAGAATTTTAGTAAAATTCCACAAGGATGTGGCTCAGGACTGGAAAAGCAAAACGCGTTTTTGATTTTGTAACTTTTTCGACAATTGAACCATTTTTAACTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAAATGTAACCGGTAGAAAAAGAAAATGGCGTTTTCAAGGATTTCGATTTTTTTGGATTGTTTCTAATTAAAATTATGTCAGTACATAACTTTCGAAGCATTTCAATTTAAAAAAAACGTCTTTCTTTGAATAAAGAAAGCTGACGAGGCTAAAAATCATAGGATTTTTTCTTTCGTAAAAAATTTAATGAGCACATTTCAACCCCAATTATGTTTTGTTCCAGAGCCAGGTACCTGAAAAAGCACGATTTGTTGATCAAAATTCCACCAACTCAAATAACATATAATCAAATCTCCTGCCTAAACCTAACAACCACTCAACTTCACAATTCATTCTCCAAAAAAAAAGGAAAAAATGGATTGCTCGAGTTCGGAGAAAGATGAATATTTTTGGATATTACATTTTGTGTTAATACTTTCTCTTCCCGTTTATATTGTCGCAATTATCGCACTGTTGCAAACCAAATCCACGTATTTCGAAACCTATAAACTATTTTTGATCTGGCACCCTTTGGGGTTGGTGGAAATTTGAGATATTTTACACATCCGCTTTTTCAGAAATCTTCTTGCTGAAATTTTGAATTCCTGGTTCCTGGTTCCTGTCGTTCATCTTCCCCTTCCACTTCTCAGGTTTACTGGATTCCTCTCTCAGTGGGGATTCAGTGGTTTATTTCAATTTTTGATCATTGTGTCAATGATATATCGTATGTTAACTTGACATTGTCAAGAATCTGACAATAGCCATTTAA</canonical>
            <polymorphic>AAAAAGTGCTTTTTGAGTTGAGAATTTTAGTAAAATTCCACAAGGATGTGGCTCAGGACTGGAAAAGCAAAACGCGTTTTTGATTTTGTAACTTTTTCGACAATTGAACCATTTTTAACTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAAATGTAACCGGTAGAAAAAGAAAATGGCGTTTTCAAGGATTTCGATTTTTTTGGATTGTTTCTAATTAAAATTATGTCAGTACATAACTTTCGAAGCATTTCAATTTAAAAAAAACGTCTTTCTTTGAATAAAGAAAGCTGACGAGGCTAAAAATCATAGGATTTTTTCTTTCGTAAAAAATTTAATGAGCACATTTCAACCCCAATTATGTTTTGTTCCAGAGCCAGGTACCTGAAAAAGCACGAKTTGTTGATCAAAATTCCACCAACTCAAATAACATATAATCAAATCTCCTGCCTAAACCTAACAACCACTCAACTTCACAATTCATTCTCCAAAAAAAAAGGAAAAAATGGATTGCTCGAGTTCGGAGAAAGATGAATATTTTTGGATATTACATTTTGTGTTAATACTTTCTCTTCCCGTTTATATTGTCGCAATTATCGCACTGTTGCAAACCAAATCCACGTATTTCGAAACCTATAAACTATTTTTGATCTGGCACCCTTTGGGGTTGGTGGAAATTTGAGATATTTTACACATCCGCTTTTTCAGAAATCTTCTTGCTGAAATTTTGAATTCCTGGTTCCTGGTTCCTGTCGTTCATCTTCCCCTTCCACTTCTCAGGTTTACTGGATTCCTCTCTCAGTGGGGATTCAGTGGTTTATTTCAATTTTTGATCATTGTGTCAATGATATATCGTATGTTAACTTGACATTGTCAAGAATCTGACAATAGCCATTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGACGAGGCTAAAAATCATAG</pcr_primer_p1>
		<pcr_primer_p2>AAATATTCATCTTTCTCCGAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGACGAGGCTAAAAATCATAGGATTTTTTCTTTCGTAAAAAATTTAATGAGCACATTTCAACCCCAATTATGTTTTGTTCCAGAGCCAGGTACCTGAAAAAGCACGATTTGTTGATCAAAATTCCACCAACTCAAATAACATATAATCAAATCTCCTGCCTAAACCTAACAACCACTCAACTTCACAATTCATTCTCCAAAAAAAAAGGAAAAAATGGATTGCTCGAGTTCGGAGAAAGATGAATATTT</canonical_amplicon>
		<polymorphic_amplicon>CTGACGAGGCTAAAAATCATAGGATTTTTTCTTTCGTAAAAAATTTAATGAGCACATTTCAACCCCAATTATGTTTTGTTCCAGAGCCAGGTACCTGAAAAAGCACGAKTTGTTGATCAAAATTCCACCAACTCAAATAACATATAATCAAATCTCCTGCCTAAACCTAACAACCACTCAACTTCACAATTCATTCTCCAAAAAAAAAGGAAAAAATGGATTGCTCGAGTTCGGAGAAAGATGAATATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37015</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>249765</contig_pos>
        <strand>+</strand>
        <context>ACCTAACAAC[A/C]ACTCAACTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCACCAACTCAAATAACATATAATCAAATCTCCTGCCTAAACCTAACAAC</left_flank>
        <right_flank>ACTCAACTTCACAATTCATTCTCCAAAAAAAAAGGAAAAAATGGATTGCT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAAAACGCGTTTTTGATTTTGTAACTTTTTCGACAATTGAACCATTTTTAACTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAAATGTAACCGGTAGAAAAAGAAAATGGCGTTTTCAAGGATTTCGATTTTTTTGGATTGTTTCTAATTAAAATTATGTCAGTACATAACTTTCGAAGCATTTCAATTTAAAAAAAACGTCTTTCTTTGAATAAAGAAAGCTGACGAGGCTAAAAATCATAGGATTTTTTCTTTCGTAAAAAATTTAATGAGCACATTTCAACCCCAATTATGTTTTGTTCCAGAGCCAGGTACCTGAAAAAGCACGATTTGTTGATCAAAATTCCACCAACTCAAATAACATATAATCAAATCTCCTGCCTAAACCTAACAACCACTCAACTTCACAATTCATTCTCCAAAAAAAAAGGAAAAAATGGATTGCTCGAGTTCGGAGAAAGATGAATATTTTTGGATATTACATTTTGTGTTAATACTTTCTCTTCCCGTTTATATTGTCGCAATTATCGCACTGTTGCAAACCAAATCCACGTATTTCGAAACCTATAAACTATTTTTGATCTGGCACCCTTTGGGGTTGGTGGAAATTTGAGATATTTTACACATCCGCTTTTTCAGAAATCTTCTTGCTGAAATTTTGAATTCCTGGTTCCTGGTTCCTGTCGTTCATCTTCCCCTTCCACTTCTCAGGTTTACTGGATTCCTCTCTCAGTGGGGATTCAGTGGTTTATTTCAATTTTTGATCATTGTGTCAATGATATATCGTATGTTAACTTGACATTGTCAAGAATCTGACAATAGCCATTTAAAAGATAATTTTTTAGAAACAGCTTACTCGGTTTTCGAAATGTTCATGTTTCGATTTCGAGCGAATA</canonical>
            <polymorphic>GCAAAACGCGTTTTTGATTTTGTAACTTTTTCGACAATTGAACCATTTTTAACTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAAATGTAACCGGTAGAAAAAGAAAATGGCGTTTTCAAGGATTTCGATTTTTTTGGATTGTTTCTAATTAAAATTATGTCAGTACATAACTTTCGAAGCATTTCAATTTAAAAAAAACGTCTTTCTTTGAATAAAGAAAGCTGACGAGGCTAAAAATCATAGGATTTTTTCTTTCGTAAAAAATTTAATGAGCACATTTCAACCCCAATTATGTTTTGTTCCAGAGCCAGGTACCTGAAAAAGCACGATTTGTTGATCAAAATTCCACCAACTCAAATAACATATAATCAAATCTCCTGCCTAAACCTAACAACMACTCAACTTCACAATTCATTCTCCAAAAAAAAAGGAAAAAATGGATTGCTCGAGTTCGGAGAAAGATGAATATTTTTGGATATTACATTTTGTGTTAATACTTTCTCTTCCCGTTTATATTGTCGCAATTATCGCACTGTTGCAAACCAAATCCACGTATTTCGAAACCTATAAACTATTTTTGATCTGGCACCCTTTGGGGTTGGTGGAAATTTGAGATATTTTACACATCCGCTTTTTCAGAAATCTTCTTGCTGAAATTTTGAATTCCTGGTTCCTGGTTCCTGTCGTTCATCTTCCCCTTCCACTTCTCAGGTTTACTGGATTCCTCTCTCAGTGGGGATTCAGTGGTTTATTTCAATTTTTGATCATTGTGTCAATGATATATCGTATGTTAACTTGACATTGTCAAGAATCTGACAATAGCCATTTAAAAGATAATTTTTTAGAAACAGCTTACTCGGTTTTCGAAATGTTCATGTTTCGATTTCGAGCGAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>199 124 83 79 76 52 52 51 49 42 37 32 26 22 20 19 16 11 10</canonical_bands>
                <polymorphic_bands>199 124 83 79 76 59 52 52 51 42 37 32 26 22 20 19 16 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGACGAGGCTAAAAATCATAG</pcr_primer_p1>
		<pcr_primer_p2>AAATATTCATCTTTCTCCGAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGACGAGGCTAAAAATCATAGGATTTTTTCTTTCGTAAAAAATTTAATGAGCACATTTCAACCCCAATTATGTTTTGTTCCAGAGCCAGGTACCTGAAAAAGCACGATTTGTTGATCAAAATTCCACCAACTCAAATAACATATAATCAAATCTCCTGCCTAAACCTAACAACCACTCAACTTCACAATTCATTCTCCAAAAAAAAAGGAAAAAATGGATTGCTCGAGTTCGGAGAAAGATGAATATTT</canonical_amplicon>
		<polymorphic_amplicon>CTGACGAGGCTAAAAATCATAGGATTTTTTCTTTCGTAAAAAATTTAATGAGCACATTTCAACCCCAATTATGTTTTGTTCCAGAGCCAGGTACCTGAAAAAGCACGATTTGTTGATCAAAATTCCACCAACTCAAATAACATATAATCAAATCTCCTGCCTAAACCTAACAACMACTCAACTTCACAATTCATTCTCCAAAAAAAAAGGAAAAAATGGATTGCTCGAGTTCGGAGAAAGATGAATATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37016</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>299734</contig_pos>
        <strand>+</strand>
        <context>TTCATTTGAG[A/T]AAAAAAAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGTTGTTTTCTTTGTGCTATTCTTTTCGTTTAATCATCATTCATTTGAG</left_flank>
        <right_flank>AAAAAAAAGAAATTGATGAGATCACAAAGAGTCAGCTGACTTCTCCACCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAAAGATTATTTTTCATTTTTCAAATAGCCCATGCTTCTCCAAATCTAGCTTTCTCCCTTTTTATGATCCCAGATCTCAGCTAGCTTTCCTTCTTTTCTCTATTCCCAGAAAGAATAAAGACCCGGGCAGATGGGCTCCAGATAGTCAAGAAGGGGGAAAGTGATTAATTAGTTTGTGGTGGGACGACAATAAAAGAAAGCGGAGGACTGACGAATTGTTGGTCCAATTTGAAAGAGTAGCAAGCCAAAAGTTGTCCCAATTTTCTCGAATTGATCAATTTTTGATGGATTGGAAGAAGTGTTCGTTAGTGCTGAACATTCTAAACGAAGAAAAAACTACTGCAAATTCCCTAGAGATCTTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCTAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTATTCTTTTCGTTTAATCATCATTCATTTGAGAAAAAAAAAGAAATTGATGAGATCACAAAGAGTCAGCTGACTTCTCCACCAGTTGTTCAATCCCAAGCCCCCAATTCTTTTCATTCTTTTCTCAAGCTGCTCTATCTGGCAAAAAGGAAGGAAGGAGACGAAAAAGGAGTGCCGATTGTGTTTGTTGCCTTGTGACTCTGTGAACTGAACGACCATCTGCCAGTACTCTCTTCCGGGGCGACGACACTTGAAGAAAATCAAAGAGCAACGACAAGAGATACATTCGATTAGAATGATCCTAGAAGACGTGCTTTTTCAGATCCCAATCTGTGGTAAGAAACACCAAGGATTCCTCGAAGTCATCAGAAATCGAAGAGAGACGAGAAGTTCACTTTTTGCAGGAGGGGTATCGCATTTCTTGTCTATTCTAAACTCTAAACTTTCATGTAAACTGATATTTTGATTCCAATTTTTTGTTATTGTTATAAAGCAAAGTGCAATTTGGTTCTACACACACAAAGAACGGCTCCT</canonical>
            <polymorphic>CTGAAAGATTATTTTTCATTTTTCAAATAGCCCATGCTTCTCCAAATCTAGCTTTCTCCCTTTTTATGATCCCAGATCTCAGCTAGCTTTCCTTCTTTTCTCTATTCCCAGAAAGAATAAAGACCCGGGCAGATGGGCTCCAGATAGTCAAGAAGGGGGAAAGTGATTAATTAGTTTGTGGTGGGACGACAATAAAAGAAAGCGGAGGACTGACGAATTGTTGGTCCAATTTGAAAGAGTAGCAAGCCAAAAGTTGTCCCAATTTTCTCGAATTGATCAATTTTTGATGGATTGGAAGAAGTGTTCGTTAGTGCTGAACATTCTAAACGAAGAAAAAACTACTGCAAATTCCCTAGAGATCTTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCTAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTATTCTTTTCGTTTAATCATCATTCATTTGAGWAAAAAAAAGAAATTGATGAGATCACAAAGAGTCAGCTGACTTCTCCACCAGTTGTTCAATCCCAAGCCCCCAATTCTTTTCATTCTTTTCTCAAGCTGCTCTATCTGGCAAAAAGGAAGGAAGGAGACGAAAAAGGAGTGCCGATTGTGTTTGTTGCCTTGTGACTCTGTGAACTGAACGACCATCTGCCAGTACTCTCTTCCGGGGCGACGACACTTGAAGAAAATCAAAGAGCAACGACAAGAGATACATTCGATTAGAATGATCCTAGAAGACGTGCTTTTTCAGATCCCAATCTGTGGTAAGAAACACCAAGGATTCCTCGAAGTCATCAGAAATCGAAGAGAGACGAGAAGTTCACTTTTTGCAGGAGGGGTATCGCATTTCTTGTCTATTCTAAACTCTAAACTTTCATGTAAACTGATATTTTGATTCCAATTTTTTGTTATTGTTATAAAGCAAAGTGCAATTTGGTTCTACACACACAAAGAACGGCTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTTCCAAAGTAAGACTCCT</pcr_primer_p1>
		<pcr_primer_p2>ATAGAGCAGCTTGAGAAAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCTAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTATTCTTTTCGTTTAATCATCATTCATTTGAGAAAAAAAAAGAAATTGATGAGATCACAAAGAGTCAGCTGACTTCTCCACCAGTTGTTCAATCCCAAGCCCCCAATTCTTTTCATTCTTTTCTCAAGCTGCTCTAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTTCCAAAGTAAGACTCCTTTCTCTTCAAATTAAGATGTATTTTCTAAATTCCAAAGTTCTTTTCCATCAGCGAAATCGCTGGGGAGTTGTTTTCTTTGTGCTATTCTTTTCGTTTAATCATCATTCATTTGAGWAAAAAAAAGAAATTGATGAGATCACAAAGAGTCAGCTGACTTCTCCACCAGTTGTTCAATCCCAAGCCCCCAATTCTTTTCATTCTTTTCTCAAGCTGCTCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37017</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>301176</contig_pos>
        <strand>+</strand>
        <context>CTGGGAAATT[A/C]GATTTTCGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAGAAATTGAATAGAAGGATCCTTGCAAAAGGAAAACTCGCTGGGAAATT</left_flank>
        <right_flank>GATTTTCGTAGTTTCTTGTACTTTTAGGAATCAATAAAAAAGCCTAACAA</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGGAGCCCAAAGAACGAGAAACTCCGGGAGAATGACTCAACTAGCGGAACCAAAAAATCTGCTTTTGATTTGCTCACTCCCAATGTTCACTAGTTACTATCACGACCAGATGTCGTTCGTTCGAAGTAAAAAAGTGAAAAAAAACCGCCGGCACGGAATTAATATGTCCACTTCTTCTCTCCGACACTTTGGTCACCTCTTGTTCGGAATGAAGAGAACAACCGGAAAAACAATCTTTTTGGGGATTGGACGGATAAATGGCATCTATTATTGATGCCTAATACAATCGAGAGAGAGAGATGCGTCCGTCGCCAAAATTGAGTCAATCAACCGAGATTTTTTTGTGACGAGAGTCTGATCGAGAGTCAAAAAAAAGAAAGAATAGGAATGGAGAGCAAGAAATGTAGAGCGAAGGAATACCAGGAAACTCAATGGAAGTACTGCCGAATAGAAATTGAATAGAAGGATCCTTGCAAAAGGAAAACTCGCTGGGAAATTAGATTTTCGTAGTTTCTTGTACTTTTAGGAATCAATAAAAAAGCCTAACAAAGAACCTCAACACCTTGGGACCCCAGATTTTTATGAAAATCTCAGGAGAGGTTAGGAAATCCGCTCGCCAGTTTCAGCCAAGTTCTAAGCAACACATAACAAATGTTGTATTTTGAAATGTTCTAGAAGTTGAGAAAATTGATATTTTGCACTGAAAAAACCCTGATTTTTGTACTGAAACTGATATAACTCGGCTAAAATTGGCGAGCGGATTCTAAAAGTTTCGGAAGAGTCTAGAAAGGCTTTTCTTAACATATTCTTAGATTTCCATCAAAATCTTCCCTGTAAAGACTGAAAATGCGACCCCGTTCGAAATATAATCCTCACCCGACAATAGATCCCATTATCAGAAGCTTTTTCGTTTAATCTTTTTCTATATCATTCACTGCCAACATAACTTTTTTCTGCGTCTTATCAGTATCCGATAACCTGTCAGTCAAACATCGATGA</canonical>
            <polymorphic>CAGGAGCCCAAAGAACGAGAAACTCCGGGAGAATGACTCAACTAGCGGAACCAAAAAATCTGCTTTTGATTTGCTCACTCCCAATGTTCACTAGTTACTATCACGACCAGATGTCGTTCGTTCGAAGTAAAAAAGTGAAAAAAAACCGCCGGCACGGAATTAATATGTCCACTTCTTCTCTCCGACACTTTGGTCACCTCTTGTTCGGAATGAAGAGAACAACCGGAAAAACAATCTTTTTGGGGATTGGACGGATAAATGGCATCTATTATTGATGCCTAATACAATCGAGAGAGAGAGATGCGTCCGTCGCCAAAATTGAGTCAATCAACCGAGATTTTTTTGTGACGAGAGTCTGATCGAGAGTCAAAAAAAAGAAAGAATAGGAATGGAGAGCAAGAAATGTAGAGCGAAGGAATACCAGGAAACTCAATGGAAGTACTGCCGAATAGAAATTGAATAGAAGGATCCTTGCAAAAGGAAAACTCGCTGGGAAATTMGATTTTCGTAGTTTCTTGTACTTTTAGGAATCAATAAAAAAGCCTAACAAAGAACCTCAACACCTTGGGACCCCAGATTTTTATGAAAATCTCAGGAGAGGTTAGGAAATCCGCTCGCCAGTTTCAGCCAAGTTCTAAGCAACACATAACAAATGTTGTATTTTGAAATGTTCTAGAAGTTGAGAAAATTGATATTTTGCACTGAAAAAACCCTGATTTTTGTACTGAAACTGATATAACTCGGCTAAAATTGGCGAGCGGATTCTAAAAGTTTCGGAAGAGTCTAGAAAGGCTTTTCTTAACATATTCTTAGATTTCCATCAAAATCTTCCCTGTAAAGACTGAAAATGCGACCCCGTTCGAAATATAATCCTCACCCGACAATAGATCCCATTATCAGAAGCTTTTTCGTTTAATCTTTTTCTATATCATTCACTGCCAACATAACTTTTTTCTGCGTCTTATCAGTATCCGATAACCTGTCAGTCAAACATCGATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTGCCGAATAGAAATTGAATA</pcr_primer_p1>
		<pcr_primer_p2>TTTCTCAACTTCTAGAACATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TACTGCCGAATAGAAATTGAATAGAAGGATCCTTGCAAAAGGAAAACTCGCTGGGAAATTAGATTTTCGTAGTTTCTTGTACTTTTAGGAATCAATAAAAAAGCCTAACAAAGAACCTCAACACCTTGGGACCCCAGATTTTTATGAAAATCTCAGGAGAGGTTAGGAAATCCGCTCGCCAGTTTCAGCCAAGTTCTAAGCAACACATAACAAATGTTGTATTTTGAAATGTTCTAGAAGTTGAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TACTGCCGAATAGAAATTGAATAGAAGGATCCTTGCAAAAGGAAAACTCGCTGGGAAATTMGATTTTCGTAGTTTCTTGTACTTTTAGGAATCAATAAAAAAGCCTAACAAAGAACCTCAACACCTTGGGACCCCAGATTTTTATGAAAATCTCAGGAGAGGTTAGGAAATCCGCTCGCCAGTTTCAGCCAAGTTCTAAGCAACACATAACAAATGTTGTATTTTGAAATGTTCTAGAAGTTGAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37018</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>301484</contig_pos>
        <strand>+</strand>
        <context>CTTAACATAT[C/T]CTTAGATTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCGGATTCTAAAAGTTTCGGAAGAGTCTAGAAAGGCTTTTCTTAACATAT</left_flank>
        <right_flank>CTTAGATTTCCATCAAAATCTTCCCTGTAAAGACTGAAAATGCGACCCCG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCGCCAAAATTGAGTCAATCAACCGAGATTTTTTTGTGACGAGAGTCTGATCGAGAGTCAAAAAAAAGAAAGAATAGGAATGGAGAGCAAGAAATGTAGAGCGAAGGAATACCAGGAAACTCAATGGAAGTACTGCCGAATAGAAATTGAATAGAAGGATCCTTGCAAAAGGAAAACTCGCTGGGAAATTAGATTTTCGTAGTTTCTTGTACTTTTAGGAATCAATAAAAAAGCCTAACAAAGAACCTCAACACCTTGGGACCCCAGATTTTTATGAAAATCTCAGGAGAGGTTAGGAAATCCGCTCGCCAGTTTCAGCCAAGTTCTAAGCAACACATAACAAATGTTGTATTTTGAAATGTTCTAGAAGTTGAGAAAATTGATATTTTGCACTGAAAAAACCCTGATTTTTGTACTGAAACTGATATAACTCGGCTAAAATTGGCGAGCGGATTCTAAAAGTTTCGGAAGAGTCTAGAAAGGCTTTTCTTAACATATTCTTAGATTTCCATCAAAATCTTCCCTGTAAAGACTGAAAATGCGACCCCGTTCGAAATATAATCCTCACCCGACAATAGATCCCATTATCAGAAGCTTTTTCGTTTAATCTTTTTCTATATCATTCACTGCCAACATAACTTTTTTCTGCGTCTTATCAGTATCCGATAACCTGTCAGTCAAACATCGATGATCAAATTTCGAGCTTTGCACGTTTGCAATTTCTTTAAAAAAAAGAAGAACATACCCTCGAAACGATTCCGTTCAATTCGGCGGGCGTAACGTCGTCATAGAGATGAGAAATGAAGACAGGGACACCGATGATAAGATAAGAGAGAATGCCGCCAAAGTAATCGAAAATGTTGGTGATTCCGTTCAGAAGCATTCTCCACTCCGTCAACGACTTCTGTGTGAGAATCAGGGACTTCAGCTTCTGATTCGTCATGATATTCTCCAAAACTCCAGCTCTATAGAATGCAATAGCCTCGACATTAGATCGAA</canonical>
            <polymorphic>GTCGCCAAAATTGAGTCAATCAACCGAGATTTTTTTGTGACGAGAGTCTGATCGAGAGTCAAAAAAAAGAAAGAATAGGAATGGAGAGCAAGAAATGTAGAGCGAAGGAATACCAGGAAACTCAATGGAAGTACTGCCGAATAGAAATTGAATAGAAGGATCCTTGCAAAAGGAAAACTCGCTGGGAAATTAGATTTTCGTAGTTTCTTGTACTTTTAGGAATCAATAAAAAAGCCTAACAAAGAACCTCAACACCTTGGGACCCCAGATTTTTATGAAAATCTCAGGAGAGGTTAGGAAATCCGCTCGCCAGTTTCAGCCAAGTTCTAAGCAACACATAACAAATGTTGTATTTTGAAATGTTCTAGAAGTTGAGAAAATTGATATTTTGCACTGAAAAAACCCTGATTTTTGTACTGAAACTGATATAACTCGGCTAAAATTGGCGAGCGGATTCTAAAAGTTTCGGAAGAGTCTAGAAAGGCTTTTCTTAACATATYCTTAGATTTCCATCAAAATCTTCCCTGTAAAGACTGAAAATGCGACCCCGTTCGAAATATAATCCTCACCCGACAATAGATCCCATTATCAGAAGCTTTTTCGTTTAATCTTTTTCTATATCATTCACTGCCAACATAACTTTTTTCTGCGTCTTATCAGTATCCGATAACCTGTCAGTCAAACATCGATGATCAAATTTCGAGCTTTGCACGTTTGCAATTTCTTTAAAAAAAAGAAGAACATACCCTCGAAACGATTCCGTTCAATTCGGCGGGCGTAACGTCGTCATAGAGATGAGAAATGAAGACAGGGACACCGATGATAAGATAAGAGAGAATGCCGCCAAAGTAATCGAAAATGTTGGTGATTCCGTTCAGAAGCATTCTCCACTCCGTCAACGACTTCTGTGTGAGAATCAGGGACTTCAGCTTCTGATTCGTCATGATATTCTCCAAAACTCCAGCTCTATAGAATGCAATAGCCTCGACATTAGATCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAACTGATATAACTCGGCTAA</pcr_primer_p1>
		<pcr_primer_p2>GATACTGATAAGACGCAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TGAAACTGATATAACTCGGCTAAAATTGGCGAGCGGATTCTAAAAGTTTCGGAAGAGTCTAGAAAGGCTTTTCTTAACATATTCTTAGATTTCCATCAAAATCTTCCCTGTAAAGACTGAAAATGCGACCCCGTTCGAAATATAATCCTCACCCGACAATAGATCCCATTATCAGAAGCTTTTTCGTTTAATCTTTTTCTATATCATTCACTGCCAACATAACTTTTTTCTGCGTCTTATCAGTATC</canonical_amplicon>
		<polymorphic_amplicon>TGAAACTGATATAACTCGGCTAAAATTGGCGAGCGGATTCTAAAAGTTTCGGAAGAGTCTAGAAAGGCTTTTCTTAACATATYCTTAGATTTCCATCAAAATCTTCCCTGTAAAGACTGAAAATGCGACCCCGTTCGAAATATAATCCTCACCCGACAATAGATCCCATTATCAGAAGCTTTTTCGTTTAATCTTTTTCTATATCATTCACTGCCAACATAACTTTTTTCTGCGTCTTATCAGTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37019</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>301689</contig_pos>
        <strand>+</strand>
        <context>AAATTTCGAG[A/C]TYTGCACGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATCAGTATCCGATAACCTGTCAGTCAAACATCGATGATCAAATTTCGAG</left_flank>
        <right_flank>TTTGCACGTTTGCAATTTCTTTAAAAAAAAGAAGAACATACCCTCGAAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTGTACTTTTAGGAATCAATAAAAAAGCCTAACAAAGAACCTCAACACCTTGGGACCCCAGATTTTTATGAAAATCTCAGGAGAGGTTAGGAAATCCGCTCGCCAGTTTCAGCCAAGTTCTAAGCAACACATAACAAATGTTGTATTTTGAAATGTTCTAGAAGTTGAGAAAATTGATATTTTGCACTGAAAAAACCCTGATTTTTGTACTGAAACTGATATAACTCGGCTAAAATTGGCGAGCGGATTCTAAAAGTTTCGGAAGAGTCTAGAAAGGCTTTTCTTAACATATTCTTAGATTTCCATCAAAATCTTCCCTGTAAAGACTGAAAATGCGACCCCGTTCGAAATATAATCCTCACCCGACAATAGATCCCATTATCAGAAGCTTTTTCGTTTAATCTTTTTCTATATCATTCACTGCCAACATAACTTTTTTCTGCGTCTTATCAGTATCCGATAACCTGTCAGTCAAACATCGATGATCAAATTTCGAGCTTTGCACGTTTGCAATTTCTTTAAAAAAAAGAAGAACATACCCTCGAAACGATTCCGTTCAATTCGGCGGGCGTAACGTCGTCATAGAGATGAGAAATGAAGACAGGGACACCGATGATAAGATAAGAGAGAATGCCGCCAAAGTAATCGAAAATGTTGGTGATTCCGTTCAGAAGCATTCTCCACTCCGTCAACGACTTCTGTGTGAGAATCAGGGACTTCAGCTTCTGATTCGTCATGATATTCTCCAAAACTCCAGCTCTATAGAATGCAATAGCCTCGACATTAGATCGAACTTCCATGTGTCTCTGTCGGAAATCTCCCTCCATTTTCTCTTGTTCCGACACTTTCTGCACAATTGGAGATAGTACCATTTTGTTGATAATCGTTTGAATAACAAAGTAGGAGTAGATCGCTGCAGGACCAATCCATCCGGAGCTATCGTATGTGAGCCACGTGTAATATCCAATGATGAATGGAGCAGTCACTACTGGAGCTAG</canonical>
            <polymorphic>TCTTGTACTTTTAGGAATCAATAAAAAAGCCTAACAAAGAACCTCAACACCTTGGGACCCCAGATTTTTATGAAAATCTCAGGAGAGGTTAGGAAATCCGCTCGCCAGTTTCAGCCAAGTTCTAAGCAACACATAACAAATGTTGTATTTTGAAATGTTCTAGAAGTTGAGAAAATTGATATTTTGCACTGAAAAAACCCTGATTTTTGTACTGAAACTGATATAACTCGGCTAAAATTGGCGAGCGGATTCTAAAAGTTTCGGAAGAGTCTAGAAAGGCTTTTCTTAACATATTCTTAGATTTCCATCAAAATCTTCCCTGTAAAGACTGAAAATGCGACCCCGTTCGAAATATAATCCTCACCCGACAATAGATCCCATTATCAGAAGCTTTTTCGTTTAATCTTTTTCTATATCATTCACTGCCAACATAACTTTTTTCTGCGTCTTATCAGTATCCGATAACCTGTCAGTCAAACATCGATGATCAAATTTCGAGMTTTGCACGTTTGCAATTTCTTTAAAAAAAAGAAGAACATACCCTCGAAACGATTCCGTTCAATTCGGCGGGCGTAACGTCGTCATAGAGATGAGAAATGAAGACAGGGACACCGATGATAAGATAAGAGAGAATGCCGCCAAAGTAATCGAAAATGTTGGTGATTCCGTTCAGAAGCATTCTCCACTCCGTCAACGACTTCTGTGTGAGAATCAGGGACTTCAGCTTCTGATTCGTCATGATATTCTCCAAAACTCCAGCTCTATAGAATGCAATAGCCTCGACATTAGATCGAACTTCCATGTGTCTCTGTCGGAAATCTCCCTCCATTTTCTCTTGTTCCGACACTTTCTGCACAATTGGAGATAGTACCATTTTGTTGATAATCGTTTGAATAACAAAGTAGGAGTAGATCGCTGCAGGACCAATCCATCCGGAGCTATCGTATGTGAGCCACGTGTAATATCCAATGATGAATGGAGCAGTCACTACTGGAGCTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>390 225 179 109 58 35 4</canonical_bands>
                <polymorphic_bands>390 334 179 58 35 4</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>225 161 117 111 109 85 48 44 35 29 18 14 4</canonical_bands>
                <polymorphic_bands>334 161 117 111 85 48 44 35 29 18 14 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCAGAAGCTTTTTCGTTTAAT</pcr_primer_p1>
		<pcr_primer_p2>TCTCTTATCTTATCATCGGTGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATCAGAAGCTTTTTCGTTTAATCTTTTTCTATATCATTCACTGCCAACATAACTTTTTTCTGCGTCTTATCAGTATCCGATAACCTGTCAGTCAAACATCGATGATCAAATTTCGAGCTTTGCACGTTTGCAATTTCTTTAAAAAAAAGAAGAACATACCCTCGAAACGATTCCGTTCAATTCGGCGGGCGTAACGTCGTCATAGAGATGAGAAATGAAGACAGGGACACCGATGATAAGATAAGAGA</canonical_amplicon>
		<polymorphic_amplicon>TATCAGAAGCTTTTTCGTTTAATCTTTTTCTATATCATTCACTGCCAACATAACTTTTTTCTGCGTCTTATCAGTATCCGATAACCTGTCAGTCAAACATCGATGATCAAATTTCGAGMTTTGCACGTTTGCAATTTCTTTAAAAAAAAGAAGAACATACCCTCGAAACGATTCCGTTCAATTCGGCGGGCGTAACGTCGTCATAGAGATGAGAAATGAAGACAGGGACACCGATGATAAGATAAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37020</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>301691</contig_pos>
        <strand>+</strand>
        <context>ATTTCGAGMT[C/T]TGCACGTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGTATCCGATAACCTGTCAGTCAAACATCGATGATCAAATTTCGAGCT</left_flank>
        <right_flank>TGCACGTTTGCAATTTCTTTAAAAAAAAGAAGAACATACCCTCGAAACGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTACTTTTAGGAATCAATAAAAAAGCCTAACAAAGAACCTCAACACCTTGGGACCCCAGATTTTTATGAAAATCTCAGGAGAGGTTAGGAAATCCGCTCGCCAGTTTCAGCCAAGTTCTAAGCAACACATAACAAATGTTGTATTTTGAAATGTTCTAGAAGTTGAGAAAATTGATATTTTGCACTGAAAAAACCCTGATTTTTGTACTGAAACTGATATAACTCGGCTAAAATTGGCGAGCGGATTCTAAAAGTTTCGGAAGAGTCTAGAAAGGCTTTTCTTAACATATTCTTAGATTTCCATCAAAATCTTCCCTGTAAAGACTGAAAATGCGACCCCGTTCGAAATATAATCCTCACCCGACAATAGATCCCATTATCAGAAGCTTTTTCGTTTAATCTTTTTCTATATCATTCACTGCCAACATAACTTTTTTCTGCGTCTTATCAGTATCCGATAACCTGTCAGTCAAACATCGATGATCAAATTTCGAGCTTTGCACGTTTGCAATTTCTTTAAAAAAAAGAAGAACATACCCTCGAAACGATTCCGTTCAATTCGGCGGGCGTAACGTCGTCATAGAGATGAGAAATGAAGACAGGGACACCGATGATAAGATAAGAGAGAATGCCGCCAAAGTAATCGAAAATGTTGGTGATTCCGTTCAGAAGCATTCTCCACTCCGTCAACGACTTCTGTGTGAGAATCAGGGACTTCAGCTTCTGATTCGTCATGATATTCTCCAAAACTCCAGCTCTATAGAATGCAATAGCCTCGACATTAGATCGAACTTCCATGTGTCTCTGTCGGAAATCTCCCTCCATTTTCTCTTGTTCCGACACTTTCTGCACAATTGGAGATAGTACCATTTTGTTGATAATCGTTTGAATAACAAAGTAGGAGTAGATCGCTGCAGGACCAATCCATCCGGAGCTATCGTATGTGAGCCACGTGTAATATCCAATGATGAATGGAGCAGTCACTACTGGAGCTAGGA</canonical>
            <polymorphic>TTGTACTTTTAGGAATCAATAAAAAAGCCTAACAAAGAACCTCAACACCTTGGGACCCCAGATTTTTATGAAAATCTCAGGAGAGGTTAGGAAATCCGCTCGCCAGTTTCAGCCAAGTTCTAAGCAACACATAACAAATGTTGTATTTTGAAATGTTCTAGAAGTTGAGAAAATTGATATTTTGCACTGAAAAAACCCTGATTTTTGTACTGAAACTGATATAACTCGGCTAAAATTGGCGAGCGGATTCTAAAAGTTTCGGAAGAGTCTAGAAAGGCTTTTCTTAACATATTCTTAGATTTCCATCAAAATCTTCCCTGTAAAGACTGAAAATGCGACCCCGTTCGAAATATAATCCTCACCCGACAATAGATCCCATTATCAGAAGCTTTTTCGTTTAATCTTTTTCTATATCATTCACTGCCAACATAACTTTTTTCTGCGTCTTATCAGTATCCGATAACCTGTCAGTCAAACATCGATGATCAAATTTCGAGCTYTGCACGTTTGCAATTTCTTTAAAAAAAAGAAGAACATACCCTCGAAACGATTCCGTTCAATTCGGCGGGCGTAACGTCGTCATAGAGATGAGAAATGAAGACAGGGACACCGATGATAAGATAAGAGAGAATGCCGCCAAAGTAATCGAAAATGTTGGTGATTCCGTTCAGAAGCATTCTCCACTCCGTCAACGACTTCTGTGTGAGAATCAGGGACTTCAGCTTCTGATTCGTCATGATATTCTCCAAAACTCCAGCTCTATAGAATGCAATAGCCTCGACATTAGATCGAACTTCCATGTGTCTCTGTCGGAAATCTCCCTCCATTTTCTCTTGTTCCGACACTTTCTGCACAATTGGAGATAGTACCATTTTGTTGATAATCGTTTGAATAACAAAGTAGGAGTAGATCGCTGCAGGACCAATCCATCCGGAGCTATCGTATGTGAGCCACGTGTAATATCCAATGATGAATGGAGCAGTCACTACTGGAGCTAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCAGAAGCTTTTTCGTTTAAT</pcr_primer_p1>
		<pcr_primer_p2>TCTCTTATCTTATCATCGGTGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATCAGAAGCTTTTTCGTTTAATCTTTTTCTATATCATTCACTGCCAACATAACTTTTTTCTGCGTCTTATCAGTATCCGATAACCTGTCAGTCAAACATCGATGATCAAATTTCGAGCTTTGCACGTTTGCAATTTCTTTAAAAAAAAGAAGAACATACCCTCGAAACGATTCCGTTCAATTCGGCGGGCGTAACGTCGTCATAGAGATGAGAAATGAAGACAGGGACACCGATGATAAGATAAGAGA</canonical_amplicon>
		<polymorphic_amplicon>TATCAGAAGCTTTTTCGTTTAATCTTTTTCTATATCATTCACTGCCAACATAACTTTTTTCTGCGTCTTATCAGTATCCGATAACCTGTCAGTCAAACATCGATGATCAAATTTCGAGCTYTGCACGTTTGCAATTTCTTTAAAAAAAAGAAGAACATACCCTCGAAACGATTCCGTTCAATTCGGCGGGCGTAACGTCGTCATAGAGATGAGAAATGAAGACAGGGACACCGATGATAAGATAAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37021</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>307985</contig_pos>
        <strand>+</strand>
        <context>TATCGTATTT[C/G]CTCTGATGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGCGATAGCAGGAGATTCCCTAGAATATCAATAAGTGAAATATCGTATTT</left_flank>
        <right_flank>CTCTGATGACAGCCCACCCAAACCGTTAACTTTAAGCTCAATTATCTCGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACCTGTCCAACTTCGGAAGACCTCTTCAGGATTTGACTCCTAAATTTTTGAGACAGTTTTTGAAGTTTTCATAAGTACTTGAATTTCGAAAACCTACATTATAGATAGTTGATAACATGTTATAGTCATTTGGATTCACACCGTACTCCTCTTGAAGATGCTCTTTGATATAGACCATTACGGTGTCCGATGTAGACAGCCATTTCTCACAAACATATTGGAAAAATGCAAAATAAAAAATACACAATGCGAATGAAGCAGACATGAACCGATGGAACCCTGTGCTGATTAATTTGGATCTTAGGATTACCAAGTATCGAAAAACGAAGTGACTGATGAGAATAGCATAGCTGCATGCTAGCATTGAACAACGGGCGGTCAGAATGTAGTGATTGAAACTTGAAGCTTTCTCAAAGAATCCATCGGTCAGAATCAGATAAAAACAGTAGCGATAGCAGGAGATTCCCTAGAATATCAATAAGTGAAATATCGTATTTGCTCTGATGACAGCCCACCCAAACCGTTAACTTTAAGCTCAATTATCTCGGTATTTCGGAGAGATATCAGAAGCTTGTCAACTGATAAATTATTTATCTTATTATCAGCCATGTTTTATCAATTGACAATTTTCTGATATCTTTCACAGGAACCAAGACAAAATTGGTTCAAAGTGCAAGTATAGGGTAACCTTCTATTAGAGTGTTTACGGTATTCTAGATGTGTTCAAACAGTTTCATCATAAAAACCTACAATTGGAACAGCCATCTCCAAAACAGAATAAACGACATTAAAAATGGCAAAGTACAGTAGCAAAAAGCGATAGTTCCCCAGGCAGACTGACTTTCCAGTGAACACCAAATAAACGAAAATTGGGTTCACTACAAAAGCCAGACATCCAAAAACTTTTGGAATATTGTGATGAACCCAACCAATGTACATTTTTAAAAGGGGAATTTGCAGAAAGAAGGAGAACTGCTGAAAATGGAATGGTTCTCGTT</canonical>
            <polymorphic>ACACCTGTCCAACTTCGGAAGACCTCTTCAGGATTTGACTCCTAAATTTTTGAGACAGTTTTTGAAGTTTTCATAAGTACTTGAATTTCGAAAACCTACATTATAGATAGTTGATAACATGTTATAGTCATTTGGATTCACACCGTACTCCTCTTGAAGATGCTCTTTGATATAGACCATTACGGTGTCCGATGTAGACAGCCATTTCTCACAAACATATTGGAAAAATGCAAAATAAAAAATACACAATGCGAATGAAGCAGACATGAACCGATGGAACCCTGTGCTGATTAATTTGGATCTTAGGATTACCAAGTATCGAAAAACGAAGTGACTGATGAGAATAGCATAGCTGCATGCTAGCATTGAACAACGGGCGGTCAGAATGTAGTGATTGAAACTTGAAGCTTTCTCAAAGAATCCATCGGTCAGAATCAGATAAAAACAGTAGCGATAGCAGGAGATTCCCTAGAATATCAATAAGTGAAATATCGTATTTSCTCTGATGACAGCCCACCCAAACCGTTAACTTTAAGCTCAATTATCTCGGTATTTCGGAGAGATATCAGAAGCTTGTCAACTGATAAATTATTTATCTTATTATCAGCCATGTTTTATCAATTGACAATTTTCTGATATCTTTCACAGGAACCAAGACAAAATTGGTTCAAAGTGCAAGTATAGGGTAACCTTCTATTAGAGTGTTTACGGTATTCTAGATGTGTTCAAACAGTTTCATCATAAAAACCTACAATTGGAACAGCCATCTCCAAAACAGAATAAACGACATTAAAAATGGCAAAGTACAGTAGCAAAAAGCGATAGTTCCCCAGGCAGACTGACTTTCCAGTGAACACCAAATAAACGAAAATTGGGTTCACTACAAAAGCCAGACATCCAAAAACTTTTGGAATATTGTGATGAACCCAACCAATGTACATTTTTAAAAGGGGAATTTGCAGAAAGAAGGAGAACTGCTGAAAATGGAATGGTTCTCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTAGCGATAGCAGGAGATTC</pcr_primer_p1>
		<pcr_primer_p2>GATGAAACTGTTTGAACACATCT</pcr_primer_p2>
		<pcr_amplicon_size>294</pcr_amplicon_size>
		<canonical_amplicon>AGTAGCGATAGCAGGAGATTCCCTAGAATATCAATAAGTGAAATATCGTATTTGCTCTGATGACAGCCCACCCAAACCGTTAACTTTAAGCTCAATTATCTCGGTATTTCGGAGAGATATCAGAAGCTTGTCAACTGATAAATTATTTATCTTATTATCAGCCATGTTTTATCAATTGACAATTTTCTGATATCTTTCACAGGAACCAAGACAAAATTGGTTCAAAGTGCAAGTATAGGGTAACCTTCTATTAGAGTGTTTACGGTATTCTAGATGTGTTCAAACAGTTTCATC</canonical_amplicon>
		<polymorphic_amplicon>AGTAGCGATAGCAGGAGATTCCCTAGAATATCAATAAGTGAAATATCGTATTTSCTCTGATGACAGCCCACCCAAACCGTTAACTTTAAGCTCAATTATCTCGGTATTTCGGAGAGATATCAGAAGCTTGTCAACTGATAAATTATTTATCTTATTATCAGCCATGTTTTATCAATTGACAATTTTCTGATATCTTTCACAGGAACCAAGACAAAATTGGTTCAAAGTGCAAGTATAGGGTAACCTTCTATTAGAGTGTTTACGGTATTCTAGATGTGTTCAAACAGTTTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37022</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>308079</contig_pos>
        <strand></strand>
        <context>ataaattatt[T/C]atcttattaw</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATCTCGGTATTTCGGAGAGATATCAGAAGCTTGTCAACTGATAAATTATT</left_flank>
        <right_flank>ATCTTATTATCAGCCATGTTTTATCAATTGACAATTTTCTGATATCTTTC</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTACATTATAGATAGTTGATAACATGTTATAGTCATTTGGATTCACACCGTACTCCTCTTGAAGATGCTCTTTGATATAGACCATTACGGTGTCCGATGTAGACAGCCATTTCTCACAAACATATTGGAAAAATGCAAAATAAAAAATACACAATGCGAATGAAGCAGACATGAACCGATGGAACCCTGTGCTGATTAATTTGGATCTTAGGATTACCAAGTATCGAAAAACGAAGTGACTGATGAGAATAGCATAGCTGCATGCTAGCATTGAACAACGGGCGGTCAGAATGTAGTGATTGAAACTTGAAGCTTTCTCAAAGAATCCATCGGTCAGAATCAGATAAAAACAGTAGCGATAGCAGGAGATTCCCTAGAATATCAATAAGTGAAATATCGTATTTGCTCTGATGACAGCCCACCCAAACCGTTAACTTTAAGCTCAATTATCTCGGTATTTCGGAGAGATATCAGAAGCTTGTCAACTGATAAATTATTTATCTTATTATCAGCCATGTTTTATCAATTGACAATTTTCTGATATCTTTCACAGGAACCAAGACAAAATTGGTTCAAAGTGCAAGTATAGGGTAACCTTCTATTAGAGTGTTTACGGTATTCTAGATGTGTTCAAACAGTTTCATCATAAAAACCTACAATTGGAACAGCCATCTCCAAAACAGAATAAACGACATTAAAAATGGCAAAGTACAGTAGCAAAAAGCGATAGTTCCCCAGGCAGACTGACTTTCCAGTGAACACCAAATAAACGAAAATTGGGTTCACTACAAAAGCCAGACATCCAAAAACTTTTGGAATATTGTGATGAACCCAACCAATGTACATTTTTAAAAGGGGAATTTGCAGAAAGAAGGAGAACTGCTGAAAATGGAATGGTTCTCGTTATCGCTGGACAAAAATATATAACGGGGGATGTATAAAGTTTGTTTTTAAGTTTGGCATCGAGTCCATATGGGATTGCAATGACGTACGAGGTCT</canonical>
            <polymorphic>CCTACATTATAGATAGTTGATAACATGTTATAGTCATTTGGATTCACACCGTACTCCTCTTGAAGATGCTCTTTGATATAGACCATTACGGTGTCCGATGTAGACAGCCATTTCTCACAAACATATTGGAAAAATGCAAAATAAAAAATACACAATGCGAATGAAGCAGACATGAACCGATGGAACCCTGTGCTGATTAATTTGGATCTTAGGATTACCAAGTATCGAAAAACGAAGTGACTGATGAGAATAGCATAGCTGCATGCTAGCATTGAACAACGGGCGGTCAGAATGTAGTGATTGAAACTTGAAGCTTTCTCAAAGAATCCATCGGTCAGAATCAGATAAAAACAGTAGCGATAGCAGGAGATTCCCTAGAATATCAATAAGTGAAATATCGTATTTGCTCTGATGACAGCCCACCCAAACCGTTAACTTTAAGCTCAATTATCTCGGTATTTCGGAGAGATATCAGAAGCTTGTCAACTGATAAATTATTYATCTTATTATCAGCCATGTTTTATCAATTGACAATTTTCTGATATCTTTCACAGGAACCAAGACAAAATTGGTTCAAAGTGCAAGTATAGGGTAACCTTCTATTAGAGTGTTTACGGTATTCTAGATGTGTTCAAACAGTTTCATCATAAAAACCTACAATTGGAACAGCCATCTCCAAAACAGAATAAACGACATTAAAAATGGCAAAGTACAGTAGCAAAAAGCGATAGTTCCCCAGGCAGACTGACTTTCCAGTGAACACCAAATAAACGAAAATTGGGTTCACTACAAAAGCCAGACATCCAAAAACTTTTGGAATATTGTGATGAACCCAACCAATGTACATTTTTAAAAGGGGAATTTGCAGAAAGAAGGAGAACTGCTGAAAATGGAATGGTTCTCGTTATCGCTGGACAAAAATATATAACGGGGGATGTATAAAGTTTGTTTTTAAGTTTGGCATCGAGTCCATATGGGATTGCAATGACGTACGAGGTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCCTAGAATATCAATAAGTGAA</pcr_primer_p1>
		<pcr_primer_p2>GATGAAACTGTTTGAACACATCT</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>ATTCCCTAGAATATCAATAAGTGAAATATCGTATTTGCTCTGATGACAGCCCACCCAAACCGTTAACTTTAAGCTCAATTATCTCGGTATTTCGGAGAGATATCAGAAGCTTGTCAACTGATAAATTATTTATCTTATTATCAGCCATGTTTTATCAATTGACAATTTTCTGATATCTTTCACAGGAACCAAGACAAAATTGGTTCAAAGTGCAAGTATAGGGTAACCTTCTATTAGAGTGTTTACGGTATTCTAGATGTGTTCAAACAGTTTCATC</canonical_amplicon>
		<polymorphic_amplicon>ATTCCCTAGAATATCAATAAGTGAAATATCGTATTTGCTCTGATGACAGCCCACCCAAACCGTTAACTTTAAGCTCAATTATCTCGGTATTTCGGAGAGATATCAGAAGCTTGTCAACTGATAAATTATTYATCTTATTATCAGCCATGTTTTATCAATTGACAATTTTCTGATATCTTTCACAGGAACCAAGACAAAATTGGTTCAAAGTGCAAGTATAGGGTAACCTTCTATTAGAGTGTTTACGGTATTCTAGATGTGTTCAAACAGTTTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37023</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>308089</contig_pos>
        <strand></strand>
        <context>yatcttatta[T/A]cagccatgtt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTCGGAGAGATATCAGAAGCTTGTCAACTGATAAATTATTTATCTTATTA</left_flank>
        <right_flank>CAGCCATGTTTTATCAATTGACAATTTTCTGATATCTTTCACAGGAACCA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATAGTTGATAACATGTTATAGTCATTTGGATTCACACCGTACTCCTCTTGAAGATGCTCTTTGATATAGACCATTACGGTGTCCGATGTAGACAGCCATTTCTCACAAACATATTGGAAAAATGCAAAATAAAAAATACACAATGCGAATGAAGCAGACATGAACCGATGGAACCCTGTGCTGATTAATTTGGATCTTAGGATTACCAAGTATCGAAAAACGAAGTGACTGATGAGAATAGCATAGCTGCATGCTAGCATTGAACAACGGGCGGTCAGAATGTAGTGATTGAAACTTGAAGCTTTCTCAAAGAATCCATCGGTCAGAATCAGATAAAAACAGTAGCGATAGCAGGAGATTCCCTAGAATATCAATAAGTGAAATATCGTATTTGCTCTGATGACAGCCCACCCAAACCGTTAACTTTAAGCTCAATTATCTCGGTATTTCGGAGAGATATCAGAAGCTTGTCAACTGATAAATTATTTATCTTATTATCAGCCATGTTTTATCAATTGACAATTTTCTGATATCTTTCACAGGAACCAAGACAAAATTGGTTCAAAGTGCAAGTATAGGGTAACCTTCTATTAGAGTGTTTACGGTATTCTAGATGTGTTCAAACAGTTTCATCATAAAAACCTACAATTGGAACAGCCATCTCCAAAACAGAATAAACGACATTAAAAATGGCAAAGTACAGTAGCAAAAAGCGATAGTTCCCCAGGCAGACTGACTTTCCAGTGAACACCAAATAAACGAAAATTGGGTTCACTACAAAAGCCAGACATCCAAAAACTTTTGGAATATTGTGATGAACCCAACCAATGTACATTTTTAAAAGGGGAATTTGCAGAAAGAAGGAGAACTGCTGAAAATGGAATGGTTCTCGTTATCGCTGGACAAAAATATATAACGGGGGATGTATAAAGTTTGTTTTTAAGTTTGGCATCGAGTCCATATGGGATTGCAATGACGTACGAGGTCTTCAGTATTCC</canonical>
            <polymorphic>AGATAGTTGATAACATGTTATAGTCATTTGGATTCACACCGTACTCCTCTTGAAGATGCTCTTTGATATAGACCATTACGGTGTCCGATGTAGACAGCCATTTCTCACAAACATATTGGAAAAATGCAAAATAAAAAATACACAATGCGAATGAAGCAGACATGAACCGATGGAACCCTGTGCTGATTAATTTGGATCTTAGGATTACCAAGTATCGAAAAACGAAGTGACTGATGAGAATAGCATAGCTGCATGCTAGCATTGAACAACGGGCGGTCAGAATGTAGTGATTGAAACTTGAAGCTTTCTCAAAGAATCCATCGGTCAGAATCAGATAAAAACAGTAGCGATAGCAGGAGATTCCCTAGAATATCAATAAGTGAAATATCGTATTTGCTCTGATGACAGCCCACCCAAACCGTTAACTTTAAGCTCAATTATCTCGGTATTTCGGAGAGATATCAGAAGCTTGTCAACTGATAAATTATTTATCTTATTAWCAGCCATGTTTTATCAATTGACAATTTTCTGATATCTTTCACAGGAACCAAGACAAAATTGGTTCAAAGTGCAAGTATAGGGTAACCTTCTATTAGAGTGTTTACGGTATTCTAGATGTGTTCAAACAGTTTCATCATAAAAACCTACAATTGGAACAGCCATCTCCAAAACAGAATAAACGACATTAAAAATGGCAAAGTACAGTAGCAAAAAGCGATAGTTCCCCAGGCAGACTGACTTTCCAGTGAACACCAAATAAACGAAAATTGGGTTCACTACAAAAGCCAGACATCCAAAAACTTTTGGAATATTGTGATGAACCCAACCAATGTACATTTTTAAAAGGGGAATTTGCAGAAAGAAGGAGAACTGCTGAAAATGGAATGGTTCTCGTTATCGCTGGACAAAAATATATAACGGGGGATGTATAAAGTTTGTTTTTAAGTTTGGCATCGAGTCCATATGGGATTGCAATGACGTACGAGGTCTTCAGTATTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCCTAGAATATCAATAAGTGAA</pcr_primer_p1>
		<pcr_primer_p2>GATGAAACTGTTTGAACACATCT</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>ATTCCCTAGAATATCAATAAGTGAAATATCGTATTTGCTCTGATGACAGCCCACCCAAACCGTTAACTTTAAGCTCAATTATCTCGGTATTTCGGAGAGATATCAGAAGCTTGTCAACTGATAAATTATTTATCTTATTATCAGCCATGTTTTATCAATTGACAATTTTCTGATATCTTTCACAGGAACCAAGACAAAATTGGTTCAAAGTGCAAGTATAGGGTAACCTTCTATTAGAGTGTTTACGGTATTCTAGATGTGTTCAAACAGTTTCATC</canonical_amplicon>
		<polymorphic_amplicon>ATTCCCTAGAATATCAATAAGTGAAATATCGTATTTGCTCTGATGACAGCCCACCCAAACCGTTAACTTTAAGCTCAATTATCTCGGTATTTCGGAGAGATATCAGAAGCTTGTCAACTGATAAATTATTTATCTTATTAWCAGCCATGTTTTATCAATTGACAATTTTCTGATATCTTTCACAGGAACCAAGACAAAATTGGTTCAAAGTGCAAGTATAGGGTAACCTTCTATTAGAGTGTTTACGGTATTCTAGATGTGTTCAAACAGTTTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37024</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>308142</contig_pos>
        <strand></strand>
        <context>aggaaccaag[A/G]caaaattggt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCATGTTTTATCAATTGACAATTTTCTGATATCTTTCACAGGAACCAAG</left_flank>
        <right_flank>CAAAATTGGTTCAAAGTGCAAGTATAGGGTAACCTTCTATTAGAGTGTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATGCTCTTTGATATAGACCATTACGGTGTCCGATGTAGACAGCCATTTCTCACAAACATATTGGAAAAATGCAAAATAAAAAATACACAATGCGAATGAAGCAGACATGAACCGATGGAACCCTGTGCTGATTAATTTGGATCTTAGGATTACCAAGTATCGAAAAACGAAGTGACTGATGAGAATAGCATAGCTGCATGCTAGCATTGAACAACGGGCGGTCAGAATGTAGTGATTGAAACTTGAAGCTTTCTCAAAGAATCCATCGGTCAGAATCAGATAAAAACAGTAGCGATAGCAGGAGATTCCCTAGAATATCAATAAGTGAAATATCGTATTTGCTCTGATGACAGCCCACCCAAACCGTTAACTTTAAGCTCAATTATCTCGGTATTTCGGAGAGATATCAGAAGCTTGTCAACTGATAAATTATTTATCTTATTATCAGCCATGTTTTATCAATTGACAATTTTCTGATATCTTTCACAGGAACCAAGACAAAATTGGTTCAAAGTGCAAGTATAGGGTAACCTTCTATTAGAGTGTTTACGGTATTCTAGATGTGTTCAAACAGTTTCATCATAAAAACCTACAATTGGAACAGCCATCTCCAAAACAGAATAAACGACATTAAAAATGGCAAAGTACAGTAGCAAAAAGCGATAGTTCCCCAGGCAGACTGACTTTCCAGTGAACACCAAATAAACGAAAATTGGGTTCACTACAAAAGCCAGACATCCAAAAACTTTTGGAATATTGTGATGAACCCAACCAATGTACATTTTTAAAAGGGGAATTTGCAGAAAGAAGGAGAACTGCTGAAAATGGAATGGTTCTCGTTATCGCTGGACAAAAATATATAACGGGGGATGTATAAAGTTTGTTTTTAAGTTTGGCATCGAGTCCATATGGGATTGCAATGACGTACGAGGTCTTCAGTATTCCGAGACAAACTGTCTGTTTTGGCGTTATAGAGATGTGTCTGGAAAGAAAAACAT</canonical>
            <polymorphic>AGATGCTCTTTGATATAGACCATTACGGTGTCCGATGTAGACAGCCATTTCTCACAAACATATTGGAAAAATGCAAAATAAAAAATACACAATGCGAATGAAGCAGACATGAACCGATGGAACCCTGTGCTGATTAATTTGGATCTTAGGATTACCAAGTATCGAAAAACGAAGTGACTGATGAGAATAGCATAGCTGCATGCTAGCATTGAACAACGGGCGGTCAGAATGTAGTGATTGAAACTTGAAGCTTTCTCAAAGAATCCATCGGTCAGAATCAGATAAAAACAGTAGCGATAGCAGGAGATTCCCTAGAATATCAATAAGTGAAATATCGTATTTGCTCTGATGACAGCCCACCCAAACCGTTAACTTTAAGCTCAATTATCTCGGTATTTCGGAGAGATATCAGAAGCTTGTCAACTGATAAATTATTTATCTTATTATCAGCCATGTTTTATCAATTGACAATTTTCTGATATCTTTCACAGGAACCAAGRCAAAATTGGTTCAAAGTGCAAGTATAGGGTAACCTTCTATTAGAGTGTTTACGGTATTCTAGATGTGTTCAAACAGTTTCATCATAAAAACCTACAATTGGAACAGCCATCTCCAAAACAGAATAAACGACATTAAAAATGGCAAAGTACAGTAGCAAAAAGCGATAGTTCCCCAGGCAGACTGACTTTCCAGTGAACACCAAATAAACGAAAATTGGGTTCACTACAAAAGCCAGACATCCAAAAACTTTTGGAATATTGTGATGAACCCAACCAATGTACATTTTTAAAAGGGGAATTTGCAGAAAGAAGGAGAACTGCTGAAAATGGAATGGTTCTCGTTATCGCTGGACAAAAATATATAACGGGGGATGTATAAAGTTTGTTTTTAAGTTTGGCATCGAGTCCATATGGGATTGCAATGACGTACGAGGTCTTCAGTATTCCGAGACAAACTGTCTGTTTTGGCGTTATAGAGATGTGTCTGGAAAGAAAAACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCCTAGAATATCAATAAGTGAA</pcr_primer_p1>
		<pcr_primer_p2>GATGAAACTGTTTGAACACATCT</pcr_primer_p2>
		<pcr_amplicon_size>277</pcr_amplicon_size>
		<canonical_amplicon>ATTCCCTAGAATATCAATAAGTGAAATATCGTATTTGCTCTGATGACAGCCCACCCAAACCGTTAACTTTAAGCTCAATTATCTCGGTATTTCGGAGAGATATCAGAAGCTTGTCAACTGATAAATTATTTATCTTATTATCAGCCATGTTTTATCAATTGACAATTTTCTGATATCTTTCACAGGAACCAAGACAAAATTGGTTCAAAGTGCAAGTATAGGGTAACCTTCTATTAGAGTGTTTACGGTATTCTAGATGTGTTCAAACAGTTTCATC</canonical_amplicon>
		<polymorphic_amplicon>ATTCCCTAGAATATCAATAAGTGAAATATCGTATTTGCTCTGATGACAGCCCACCCAAACCGTTAACTTTAAGCTCAATTATCTCGGTATTTCGGAGAGATATCAGAAGCTTGTCAACTGATAAATTATTTATCTTATTATCAGCCATGTTTTATCAATTGACAATTTTCTGATATCTTTCACAGGAACCAAGRCAAAATTGGTTCAAAGTGCAAGTATAGGGTAACCTTCTATTAGAGTGTTTACGGTATTCTAGATGTGTTCAAACAGTTTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37025</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>308175</contig_pos>
        <strand></strand>
        <context>tatagggtaa[C/T]cttctattag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTCACAGGAACCAAGACAAAATTGGTTCAAAGTGCAAGTATAGGGTAA</left_flank>
        <right_flank>CTTCTATTAGAGTGTTTACGGTATTCTAGATGTGTTCAAACAGTTTCATC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGTAGACAGCCATTTCTCACAAACATATTGGAAAAATGCAAAATAAAAAATACACAATGCGAATGAAGCAGACATGAACCGATGGAACCCTGTGCTGATTAATTTGGATCTTAGGATTACCAAGTATCGAAAAACGAAGTGACTGATGAGAATAGCATAGCTGCATGCTAGCATTGAACAACGGGCGGTCAGAATGTAGTGATTGAAACTTGAAGCTTTCTCAAAGAATCCATCGGTCAGAATCAGATAAAAACAGTAGCGATAGCAGGAGATTCCCTAGAATATCAATAAGTGAAATATCGTATTTGCTCTGATGACAGCCCACCCAAACCGTTAACTTTAAGCTCAATTATCTCGGTATTTCGGAGAGATATCAGAAGCTTGTCAACTGATAAATTATTTATCTTATTATCAGCCATGTTTTATCAATTGACAATTTTCTGATATCTTTCACAGGAACCAAGACAAAATTGGTTCAAAGTGCAAGTATAGGGTAACCTTCTATTAGAGTGTTTACGGTATTCTAGATGTGTTCAAACAGTTTCATCATAAAAACCTACAATTGGAACAGCCATCTCCAAAACAGAATAAACGACATTAAAAATGGCAAAGTACAGTAGCAAAAAGCGATAGTTCCCCAGGCAGACTGACTTTCCAGTGAACACCAAATAAACGAAAATTGGGTTCACTACAAAAGCCAGACATCCAAAAACTTTTGGAATATTGTGATGAACCCAACCAATGTACATTTTTAAAAGGGGAATTTGCAGAAAGAAGGAGAACTGCTGAAAATGGAATGGTTCTCGTTATCGCTGGACAAAAATATATAACGGGGGATGTATAAAGTTTGTTTTTAAGTTTGGCATCGAGTCCATATGGGATTGCAATGACGTACGAGGTCTTCAGTATTCCGAGACAAACTGTCTGTTTTGGCGTTATAGAGATGTGTCTGGAAAGAAAAACATTTCCGTGGGATATGGCTGGAAATTGAAATAACT</canonical>
            <polymorphic>GATGTAGACAGCCATTTCTCACAAACATATTGGAAAAATGCAAAATAAAAAATACACAATGCGAATGAAGCAGACATGAACCGATGGAACCCTGTGCTGATTAATTTGGATCTTAGGATTACCAAGTATCGAAAAACGAAGTGACTGATGAGAATAGCATAGCTGCATGCTAGCATTGAACAACGGGCGGTCAGAATGTAGTGATTGAAACTTGAAGCTTTCTCAAAGAATCCATCGGTCAGAATCAGATAAAAACAGTAGCGATAGCAGGAGATTCCCTAGAATATCAATAAGTGAAATATCGTATTTGCTCTGATGACAGCCCACCCAAACCGTTAACTTTAAGCTCAATTATCTCGGTATTTCGGAGAGATATCAGAAGCTTGTCAACTGATAAATTATTTATCTTATTATCAGCCATGTTTTATCAATTGACAATTTTCTGATATCTTTCACAGGAACCAAGACAAAATTGGTTCAAAGTGCAAGTATAGGGTAAYCTTCTATTAGAGTGTTTACGGTATTCTAGATGTGTTCAAACAGTTTCATCATAAAAACCTACAATTGGAACAGCCATCTCCAAAACAGAATAAACGACATTAAAAATGGCAAAGTACAGTAGCAAAAAGCGATAGTTCCCCAGGCAGACTGACTTTCCAGTGAACACCAAATAAACGAAAATTGGGTTCACTACAAAAGCCAGACATCCAAAAACTTTTGGAATATTGTGATGAACCCAACCAATGTACATTTTTAAAAGGGGAATTTGCAGAAAGAAGGAGAACTGCTGAAAATGGAATGGTTCTCGTTATCGCTGGACAAAAATATATAACGGGGGATGTATAAAGTTTGTTTTTAAGTTTGGCATCGAGTCCATATGGGATTGCAATGACGTACGAGGTCTTCAGTATTCCGAGACAAACTGTCTGTTTTGGCGTTATAGAGATGTGTCTGGAAAGAAAAACATTTCCGTGGGATATGGCTGGAAATTGAAATAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGTNACC</site>
                <isoschizomers>
                    <enzyme>BstEII</enzyme>
                    <enzyme>BstPI</enzyme>
                    <enzyme>Eco91I</enzyme>
                    <enzyme>EcoO65I</enzyme>
                    <enzyme>PspEI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 355 140</canonical_bands>
                <polymorphic_bands>860 140</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCCCTAGAATATCAATAAGTGAA</pcr_primer_p1>
		<pcr_primer_p2>TGTAGGTTTTTATGATGAAACTGT</pcr_primer_p2>
		<pcr_amplicon_size>290</pcr_amplicon_size>
		<canonical_amplicon>ATTCCCTAGAATATCAATAAGTGAAATATCGTATTTGCTCTGATGACAGCCCACCCAAACCGTTAACTTTAAGCTCAATTATCTCGGTATTTCGGAGAGATATCAGAAGCTTGTCAACTGATAAATTATTTATCTTATTATCAGCCATGTTTTATCAATTGACAATTTTCTGATATCTTTCACAGGAACCAAGACAAAATTGGTTCAAAGTGCAAGTATAGGGTAACCTTCTATTAGAGTGTTTACGGTATTCTAGATGTGTTCAAACAGTTTCATCATAAAAACCTACA</canonical_amplicon>
		<polymorphic_amplicon>ATTCCCTAGAATATCAATAAGTGAAATATCGTATTTGCTCTGATGACAGCCCACCCAAACCGTTAACTTTAAGCTCAATTATCTCGGTATTTCGGAGAGATATCAGAAGCTTGTCAACTGATAAATTATTTATCTTATTATCAGCCATGTTTTATCAATTGACAATTTTCTGATATCTTTCACAGGAACCAAGACAAAATTGGTTCAAAGTGCAAGTATAGGGTAAYCTTCTATTAGAGTGTTTACGGTATTCTAGATGTGTTCAAACAGTTTCATCATAAAAACCTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37026</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>341810</contig_pos>
        <strand></strand>
        <context>aatcaaaaaa[C/T]cacaaaaaac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGCTTTTTTTTTAATTCCAGGCTTGGGCTAAAAAAATGAAATCAAAAAA</left_flank>
        <right_flank>CACAAAAAACGATGCTCGTGTTGATTTACGAGGCCCCGCCCCCAAATCCG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACTTGAGAAAAGATGTCAATAAGATAAAAGAAAATTGTGTGTCCTTCTTCTTCCAAGCTCCGCCCCCCTTTTCTCGCTCCCACGCATTCGTCTCGTGGGAAATAGAGCCTCATACTAGAGTGTTAACTTGACTCGATTCTCGGGTGAAAAAAGATGTTTGGTCCTTCTCCACATTCTTATTCATCTGGAGAAGAAGATGTGTCCTCCTCAAAAAAATGTATCAAAAAAGGAGAGGTGGGCCGGCCCCTCTTCAGAAGGACTTCTGAATATGTGTCAACATGAGAAGTAGTTGTTTTTAAAGGATTCTGATGACGAACGAAGACAGTTATTGTCAATCATTTTAGCTTGAAGAACAGAGAATTCTTTCAAAATGATTTCACGGAAAGGAGAGCTAAAAATAAAGGAAGACAACTGATTCAACAAAGAAGGAGAAGTAGTTTTTGACTGGGCTTTTTTTTTAATTCCAGGCTTGGGCTAAAAAAATGAAATCAAAAAACCACAAAAAACGATGCTCGTGTTGATTTACGAGGCCCCGCCCCCAAATCCGATATTGTCATGAGCGAAATTAATTTCTGTAAATTTTGTGGGATTTTCTGGACCGAATTCAGATTTTTTTTGGTGAAAATATGATCGCTAGCATCTCTAGAATCCATTTTTTATTGAAAAACCAAACTTTTTTCGCGAAAAACGTCGAAACGAGGCAAAAATCTATAATATTCTGATTTTGCCACGCCGCCTCAAATTAAGACTATTTTTGGTATGGAATTCCGACCGGAAAATTTTTCTTTCGAAGCTTTTTTTTCAAATTCTGACCGGATTTTTTCTGAGTTTTCTTCGGAATTTTTCGGAAAAGAAATAGATTTTAGACTACGGTATTTCAAAGGCGCATGCGAAAAGTTCTCTAGCGGTTTCGAGCGGAACTATTTTACAGTAGTTTTTTTTGCATTTTCGAACTTTTTGGCAATTTTCCACCAATTTTTTTGCGATTTTGTGATCT</canonical>
            <polymorphic>AAAACTTGAGAAAAGATGTCAATAAGATAAAAGAAAATTGTGTGTCCTTCTTCTTCCAAGCTCCGCCCCCCTTTTCTCGCTCCCACGCATTCGTCTCGTGGGAAATAGAGCCTCATACTAGAGTGTTAACTTGACTCGATTCTCGGGTGAAAAAAGATGTTTGGTCCTTCTCCACATTCTTATTCATCTGGAGAAGAAGATGTGTCCTCCTCAAAAAAATGTATCAAAAAAGGAGAGGTGGGCCGGCCCCTCTTCAGAAGGACTTCTGAATATGTGTCAACATGAGAAGTAGTTGTTTTTAAAGGATTCTGATGACGAACGAAGACAGTTATTGTCAATCATTTTAGCTTGAAGAACAGAGAATTCTTTCAAAATGATTTCACGGAAAGGAGAGCTAAAAATAAAGGAAGACAACTGATTCAACAAAGAAGGAGAAGTAGTTTTTGACTGGGCTTTTTTTTTAATTCCAGGCTTGGGCTAAAAAAATGAAATCAAAAAAYCACAAAAAACGATGCTCGTGTTGATTTACGAGGCCCCGCCCCCAAATCCGATATTGTCATGAGCGAAATTAATTTCTGTAAATTTTGTGGGATTTTCTGGACCGAATTCAGATTTTTTTTGGTGAAAATATGATCGCTAGCATCTCTAGAATCCATTTTTTATTGAAAAACCAAACTTTTTTCGCGAAAAACGTCGAAACGAGGCAAAAATCTATAATATTCTGATTTTGCCACGCCGCCTCAAATTAAGACTATTTTTGGTATGGAATTCCGACCGGAAAATTTTTCTTTCGAAGCTTTTTTTTCAAATTCTGACCGGATTTTTTCTGAGTTTTCTTCGGAATTTTTCGGAAAAGAAATAGATTTTAGACTACGGTATTTCAAAGGCGCATGCGAAAAGTTCTCTAGCGGTTTCGAGCGGAACTATTTTACAGTAGTTTTTTTTGCATTTTCGAACTTTTTGGCAATTTTCCACCAATTTTTTTGCGATTTTGTGATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTTTTTGACTGGGCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTCTGCTTAGTTCTGCTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>679</pcr_amplicon_size>
		<canonical_amplicon>TAGTTTTTGACTGGGCTTTTTTTTTAATTCCAGGCTTGGGCTAAAAAAATGAAATCAAAAAACCACAAAAAACGATGCTCGTG</canonical_amplicon>
		<polymorphic_amplicon>TAGTTTTTGACTGGGCTTTTTTTTTAATTCCAGGCTTGGGCTAAAAAAATGAAATCAAAAAAYCACAAAAAACGATGCTCGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37027</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>341825</contig_pos>
        <strand></strand>
        <context>aaaaacgatg[C/T]tcgtgttgat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCAGGCTTGGGCTAAAAAAATGAAATCAAAAAACCACAAAAAACGATG</left_flank>
        <right_flank>TCGTGTTGATTTACGAGGCCCCGCCCCCAAATCCGATATTGTCATGAGCG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTCAATAAGATAAAAGAAAATTGTGTGTCCTTCTTCTTCCAAGCTCCGCCCCCCTTTTCTCGCTCCCACGCATTCGTCTCGTGGGAAATAGAGCCTCATACTAGAGTGTTAACTTGACTCGATTCTCGGGTGAAAAAAGATGTTTGGTCCTTCTCCACATTCTTATTCATCTGGAGAAGAAGATGTGTCCTCCTCAAAAAAATGTATCAAAAAAGGAGAGGTGGGCCGGCCCCTCTTCAGAAGGACTTCTGAATATGTGTCAACATGAGAAGTAGTTGTTTTTAAAGGATTCTGATGACGAACGAAGACAGTTATTGTCAATCATTTTAGCTTGAAGAACAGAGAATTCTTTCAAAATGATTTCACGGAAAGGAGAGCTAAAAATAAAGGAAGACAACTGATTCAACAAAGAAGGAGAAGTAGTTTTTGACTGGGCTTTTTTTTTAATTCCAGGCTTGGGCTAAAAAAATGAAATCAAAAAACCACAAAAAACGATGCTCGTGTTGATTTACGAGGCCCCGCCCCCAAATCCGATATTGTCATGAGCGAAATTAATTTCTGTAAATTTTGTGGGATTTTCTGGACCGAATTCAGATTTTTTTTGGTGAAAATATGATCGCTAGCATCTCTAGAATCCATTTTTTATTGAAAAACCAAACTTTTTTCGCGAAAAACGTCGAAACGAGGCAAAAATCTATAATATTCTGATTTTGCCACGCCGCCTCAAATTAAGACTATTTTTGGTATGGAATTCCGACCGGAAAATTTTTCTTTCGAAGCTTTTTTTTCAAATTCTGACCGGATTTTTTCTGAGTTTTCTTCGGAATTTTTCGGAAAAGAAATAGATTTTAGACTACGGTATTTCAAAGGCGCATGCGAAAAGTTCTCTAGCGGTTTCGAGCGGAACTATTTTACAGTAGTTTTTTTTGCATTTTCGAACTTTTTGGCAATTTTCCACCAATTTTTTTGCGATTTTGTGATCTGAAAATGCGATTTTT</canonical>
            <polymorphic>ATGTCAATAAGATAAAAGAAAATTGTGTGTCCTTCTTCTTCCAAGCTCCGCCCCCCTTTTCTCGCTCCCACGCATTCGTCTCGTGGGAAATAGAGCCTCATACTAGAGTGTTAACTTGACTCGATTCTCGGGTGAAAAAAGATGTTTGGTCCTTCTCCACATTCTTATTCATCTGGAGAAGAAGATGTGTCCTCCTCAAAAAAATGTATCAAAAAAGGAGAGGTGGGCCGGCCCCTCTTCAGAAGGACTTCTGAATATGTGTCAACATGAGAAGTAGTTGTTTTTAAAGGATTCTGATGACGAACGAAGACAGTTATTGTCAATCATTTTAGCTTGAAGAACAGAGAATTCTTTCAAAATGATTTCACGGAAAGGAGAGCTAAAAATAAAGGAAGACAACTGATTCAACAAAGAAGGAGAAGTAGTTTTTGACTGGGCTTTTTTTTTAATTCCAGGCTTGGGCTAAAAAAATGAAATCAAAAAACCACAAAAAACGATGYTCGTGTTGATTTACGAGGCCCCGCCCCCAAATCCGATATTGTCATGAGCGAAATTAATTTCTGTAAATTTTGTGGGATTTTCTGGACCGAATTCAGATTTTTTTTGGTGAAAATATGATCGCTAGCATCTCTAGAATCCATTTTTTATTGAAAAACCAAACTTTTTTCGCGAAAAACGTCGAAACGAGGCAAAAATCTATAATATTCTGATTTTGCCACGCCGCCTCAAATTAAGACTATTTTTGGTATGGAATTCCGACCGGAAAATTTTTCTTTCGAAGCTTTTTTTTCAAATTCTGACCGGATTTTTTCTGAGTTTTCTTCGGAATTTTTCGGAAAAGAAATAGATTTTAGACTACGGTATTTCAAAGGCGCATGCGAAAAGTTCTCTAGCGGTTTCGAGCGGAACTATTTTACAGTAGTTTTTTTTGCATTTTCGAACTTTTTGGCAATTTTCCACCAATTTTTTTGCGATTTTGTGATCTGAAAATGCGATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTTTTTGACTGGGCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTCTGCTTAGTTCTGCTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>679</pcr_amplicon_size>
		<canonical_amplicon>TAGTTTTTGACTGGGCTTTTTTTTTAATTCCAGGCTTGGGCTAAAAAAATGAAATCAAAAAACCACAAAAAACGATGCTCGTGTTGATTTACGAGGCC</canonical_amplicon>
		<polymorphic_amplicon>TAGTTTTTGACTGGGCTTTTTTTTTAATTCCAGGCTTGGGCTAAAAAAATGAAATCAAAAAACCACAAAAAACGATGYTCGTGTTGATTTACGAGGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37028</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>341964</contig_pos>
        <strand></strand>
        <context>ctctagaatc[C/A]attttttatt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GAATTCAGATTTTTTTTGGTGAAAATATGATCGCTAGCATCTCTAGAATC</left_flank>
        <right_flank>ATTTTTTATTGAAAAACCAAACTTTTTTCGCGAAAAACGTCGAAACGAGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATGTTTGGTCCTTCTCCACATTCTTATTCATCTGGAGAAGAAGATGTGTCCTCCTCAAAAAAATGTATCAAAAAAGGAGAGGTGGGCCGGCCCCTCTTCAGAAGGACTTCTGAATATGTGTCAACATGAGAAGTAGTTGTTTTTAAAGGATTCTGATGACGAACGAAGACAGTTATTGTCAATCATTTTAGCTTGAAGAACAGAGAATTCTTTCAAAATGATTTCACGGAAAGGAGAGCTAAAAATAAAGGAAGACAACTGATTCAACAAAGAAGGAGAAGTAGTTTTTGACTGGGCTTTTTTTTTAATTCCAGGCTTGGGCTAAAAAAATGAAATCAAAAAACCACAAAAAACGATGCTCGTGTTGATTTACGAGGCCCCGCCCCCAAATCCGATATTGTCATGAGCGAAATTAATTTCTGTAAATTTTGTGGGATTTTCTGGACCGAATTCAGATTTTTTTTGGTGAAAATATGATCGCTAGCATCTCTAGAATCCATTTTTTATTGAAAAACCAAACTTTTTTCGCGAAAAACGTCGAAACGAGGCAAAAATCTATAATATTCTGATTTTGCCACGCCGCCTCAAATTAAGACTATTTTTGGTATGGAATTCCGACCGGAAAATTTTTCTTTCGAAGCTTTTTTTTCAAATTCTGACCGGATTTTTTCTGAGTTTTCTTCGGAATTTTTCGGAAAAGAAATAGATTTTAGACTACGGTATTTCAAAGGCGCATGCGAAAAGTTCTCTAGCGGTTTCGAGCGGAACTATTTTACAGTAGTTTTTTTTGCATTTTCGAACTTTTTGGCAATTTTCCACCAATTTTTTTGCGATTTTGTGATCTGAAAATGCGATTTTTAAGTTAAAAGTTTAATTTTAAAAAATTCCGGTTTTTTGAAAATCGGAATTTTCGACAAACTTACACGATGCATGCATTTTTTTGAGCAGAACTAAGCAGACGAACTAGTTAAATGAAAATGCGAAAGTGTCAACTCATT</canonical>
            <polymorphic>AGATGTTTGGTCCTTCTCCACATTCTTATTCATCTGGAGAAGAAGATGTGTCCTCCTCAAAAAAATGTATCAAAAAAGGAGAGGTGGGCCGGCCCCTCTTCAGAAGGACTTCTGAATATGTGTCAACATGAGAAGTAGTTGTTTTTAAAGGATTCTGATGACGAACGAAGACAGTTATTGTCAATCATTTTAGCTTGAAGAACAGAGAATTCTTTCAAAATGATTTCACGGAAAGGAGAGCTAAAAATAAAGGAAGACAACTGATTCAACAAAGAAGGAGAAGTAGTTTTTGACTGGGCTTTTTTTTTAATTCCAGGCTTGGGCTAAAAAAATGAAATCAAAAAACCACAAAAAACGATGCTCGTGTTGATTTACGAGGCCCCGCCCCCAAATCCGATATTGTCATGAGCGAAATTAATTTCTGTAAATTTTGTGGGATTTTCTGGACCGAATTCAGATTTTTTTTGGTGAAAATATGATCGCTAGCATCTCTAGAATCMATTTTTTATTGAAAAACCAAACTTTTTTCGCGAAAAACGTCGAAACGAGGCAAAAATCTATAATATTCTGATTTTGCCACGCCGCCTCAAATTAAGACTATTTTTGGTATGGAATTCCGACCGGAAAATTTTTCTTTCGAAGCTTTTTTTTCAAATTCTGACCGGATTTTTTCTGAGTTTTCTTCGGAATTTTTCGGAAAAGAAATAGATTTTAGACTACGGTATTTCAAAGGCGCATGCGAAAAGTTCTCTAGCGGTTTCGAGCGGAACTATTTTACAGTAGTTTTTTTTGCATTTTCGAACTTTTTGGCAATTTTCCACCAATTTTTTTGCGATTTTGTGATCTGAAAATGCGATTTTTAAGTTAAAAGTTTAATTTTAAAAAATTCCGGTTTTTTGAAAATCGGAATTTTCGACAAACTTACACGATGCATGCATTTTTTTGAGCAGAACTAAGCAGACGAACTAGTTAAATGAAAATGCGAAAGTGTCAACTCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTTTTTGACTGGGCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTCTGCTTAGTTCTGCTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>679</pcr_amplicon_size>
		<canonical_amplicon>TAGTTTTTGACTGGGCTTTTTTTTTAATTCCAGGCTTGGGCTAAAAAAATGAAATCAAAAAACCACAAAAAACGATGCTCGTGTTGATTTACGAGGCCCCGCCCCCAAATCCGATATTGTCATGAGCGAAATTAATTTCTGTAAATTTTGTGGGATTTTCTGGACCGAATTCAGATTTTTTTTGGTGAAAATATGATCGCTAGCATCTCTAGAATCCATTTTTTATTGAAAAACCAAACTTTTTTCGCGAAAAACGTCGAAACGAGGCAAAAATCTATAATATTCTGATTTTGCCACGCCGCCTCAAATTAAGACTATTTTTGGTATGGAATTCCGACCGGAAAATTTTTCTTTCGAAGCTTTTTTTTCAAATTCTGACCGGATTTTTTCTGAGTTTTCTTCGGAATTTTTCGGAAAAGAAATAGATTTTAGACTACGGTATTTCAAAGGCGCATGCGAAAAGTTCTCTAGCGGTTTCGAGCGGAACTATTTTACAGTAGTTTTTTTTGCATTTTCGAACTTTTTGGCAATTTTCCACCAATTTTTTTGCGATTTTGTGATCTGAAAATGCGATTTTTAAGTTAAAAGTTTAATTTTAAAAAATTCCGGTTTTTTGAAAATCGGAATTTTCGACAAACTTACACGATGCATGCATTTTTTTGAGCAGAACTAAGCAGAC</canonical_amplicon>
		<polymorphic_amplicon>TAGTTTTTGACTGGGCTTTTTTTTTAATTCCAGGCTTGGGCTAAAAAAATGAAATCAAAAAACCACAAAAAACGATGCTCGTGTTGATTTACGAGGCCCCGCCCCCAAATCCGATATTGTCATGAGCGAAATTAATTTCTGTAAATTTTGTGGGATTTTCTGGACCGAATTCAGATTTTTTTTGGTGAAAATATGATCGCTAGCATCTCTAGAATCMATTTTTTATTGAAAAACCAAACTTTTTTCGCGAAAAACGTCGAAACGAGGCAAAAATCTATAATATTCTGATTTTGCCACGCCGCCTCAAATTAAGACTATTTTTGGTATGGAATTCCGACCGGAAAATTTTTCTTTCGAAGCTTTTTTTTCAAATTCTGACCGGATTTTTTCTGAGTTTTCTTCGGAATTTTTCGGAAAAGAAATAGATTTTAGACTACGGTATTTCAAAGGCGCATGCGAAAAGTTCTCTAGCGGTTTCGAGCGGAACTATTTTACAGTAGTTTTTTTTGCATTTTCGAACTTTTTGGCAATTTTCCACCAATTTTTTTGCGATTTTGTGATCTGAAAATGCGATTTTTAAGTTAAAAGTTTAATTTTAAAAAATTCCGGTTTTTTGAAAATCGGAATTTTCGACAAACTTACACGATGCATGCATTTTTTTGAGCAGAACTAAGCAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37029</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>341992</contig_pos>
        <strand></strand>
        <context>caaacttttt[T/C]cgcgaaaaac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GATCGCTAGCATCTCTAGAATCCATTTTTTATTGAAAAACCAAACTTTTT</left_flank>
        <right_flank>CGCGAAAAACGTCGAAACGAGGCAAAAATCTATAATATTCTGATTTTGCC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCATCTGGAGAAGAAGATGTGTCCTCCTCAAAAAAATGTATCAAAAAAGGAGAGGTGGGCCGGCCCCTCTTCAGAAGGACTTCTGAATATGTGTCAACATGAGAAGTAGTTGTTTTTAAAGGATTCTGATGACGAACGAAGACAGTTATTGTCAATCATTTTAGCTTGAAGAACAGAGAATTCTTTCAAAATGATTTCACGGAAAGGAGAGCTAAAAATAAAGGAAGACAACTGATTCAACAAAGAAGGAGAAGTAGTTTTTGACTGGGCTTTTTTTTTAATTCCAGGCTTGGGCTAAAAAAATGAAATCAAAAAACCACAAAAAACGATGCTCGTGTTGATTTACGAGGCCCCGCCCCCAAATCCGATATTGTCATGAGCGAAATTAATTTCTGTAAATTTTGTGGGATTTTCTGGACCGAATTCAGATTTTTTTTGGTGAAAATATGATCGCTAGCATCTCTAGAATCCATTTTTTATTGAAAAACCAAACTTTTTTCGCGAAAAACGTCGAAACGAGGCAAAAATCTATAATATTCTGATTTTGCCACGCCGCCTCAAATTAAGACTATTTTTGGTATGGAATTCCGACCGGAAAATTTTTCTTTCGAAGCTTTTTTTTCAAATTCTGACCGGATTTTTTCTGAGTTTTCTTCGGAATTTTTCGGAAAAGAAATAGATTTTAGACTACGGTATTTCAAAGGCGCATGCGAAAAGTTCTCTAGCGGTTTCGAGCGGAACTATTTTACAGTAGTTTTTTTTGCATTTTCGAACTTTTTGGCAATTTTCCACCAATTTTTTTGCGATTTTGTGATCTGAAAATGCGATTTTTAAGTTAAAAGTTTAATTTTAAAAAATTCCGGTTTTTTGAAAATCGGAATTTTCGACAAACTTACACGATGCATGCATTTTTTTGAGCAGAACTAAGCAGACGAACTAGTTAAATGAAAATGCGAAAGTGTCAACTCATTGCTCCTAGACCTCCATCCCCTTTCCCCC</canonical>
            <polymorphic>TTCATCTGGAGAAGAAGATGTGTCCTCCTCAAAAAAATGTATCAAAAAAGGAGAGGTGGGCCGGCCCCTCTTCAGAAGGACTTCTGAATATGTGTCAACATGAGAAGTAGTTGTTTTTAAAGGATTCTGATGACGAACGAAGACAGTTATTGTCAATCATTTTAGCTTGAAGAACAGAGAATTCTTTCAAAATGATTTCACGGAAAGGAGAGCTAAAAATAAAGGAAGACAACTGATTCAACAAAGAAGGAGAAGTAGTTTTTGACTGGGCTTTTTTTTTAATTCCAGGCTTGGGCTAAAAAAATGAAATCAAAAAACCACAAAAAACGATGCTCGTGTTGATTTACGAGGCCCCGCCCCCAAATCCGATATTGTCATGAGCGAAATTAATTTCTGTAAATTTTGTGGGATTTTCTGGACCGAATTCAGATTTTTTTTGGTGAAAATATGATCGCTAGCATCTCTAGAATCCATTTTTTATTGAAAAACCAAACTTTTTYCGCGAAAAACGTCGAAACGAGGCAAAAATCTATAATATTCTGATTTTGCCACGCCGCCTCAAATTAAGACTATTTTTGGTATGGAATTCCGACCGGAAAATTTTTCTTTCGAAGCTTTTTTTTCAAATTCTGACCGGATTTTTTCTGAGTTTTCTTCGGAATTTTTCGGAAAAGAAATAGATTTTAGACTACGGTATTTCAAAGGCGCATGCGAAAAGTTCTCTAGCGGTTTCGAGCGGAACTATTTTACAGTAGTTTTTTTTGCATTTTCGAACTTTTTGGCAATTTTCCACCAATTTTTTTGCGATTTTGTGATCTGAAAATGCGATTTTTAAGTTAAAAGTTTAATTTTAAAAAATTCCGGTTTTTTGAAAATCGGAATTTTCGACAAACTTACACGATGCATGCATTTTTTTGAGCAGAACTAAGCAGACGAACTAGTTAAATGAAAATGCGAAAGTGTCAACTCATTGCTCCTAGACCTCCATCCCCTTTCCCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGCGA</site>
                <isoschizomers>
                    <enzyme>Bsp68I</enzyme>
                    <enzyme>NruI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>499 370 49 39 37 6</canonical_bands>
                <polymorphic_bands>536 370 49 39 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGTTTTTGACTGGGCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTCTGCTTAGTTCTGCTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>679</pcr_amplicon_size>
		<canonical_amplicon>TAGTTTTTGACTGGGCTTTTTTTTTAATTCCAGGCTTGGGCTAAAAAAATGAAATCAAAAAACCACAAAAAACGATGCTCGTGTTGATTTACGAGGCCCCGCCCCCAAATCCGATATTGTCATGAGCGAAATTAATTTCTGTAAATTTTGTGGGATTTTCTGGACCGAATTCAGATTTTTTTTGGTGAAAATATGATCGCTAGCATCTCTAGAATCCATTTTTTATTGAAAAACCAAACTTTTTTCGCGAAAAACGTCGAAACGAGGCAAAAATCTATAATATTCTGATTTTGCCACGCCGCCTCAAATTAAGACTATTTTTGGTATGGAATTCCGACCGGAAAATTTTTCTTTCGAAGCTTTTTTTTCAAATTCTGACCGGATTTTTTCTGAGTTTTCTTCGGAATTTTTCGGAAAAGAAATAGATTTTAGACTACGGTATTTCAAAGGCGCATGCGAAAAGTTCTCTAGCGGTTTCGAGCGGAACTATTTTACAGTAGTTTTTTTTGCATTTTCGAACTTTTTGGCAATTTTCCACCAATTTTTTTGCGATTTTGTGATCTGAAAATGCGATTTTTAAGTTAAAAGTTTAATTTTAAAAAATTCCGGTTTTTTGAAAATCGGAATTTTCGACAAACTTACACGATGCATGCATTTTTTTGAGCAGAACTAAGCAGAC</canonical_amplicon>
		<polymorphic_amplicon>TAGTTTTTGACTGGGCTTTTTTTTTAATTCCAGGCTTGGGCTAAAAAAATGAAATCAAAAAACCACAAAAAACGATGCTCGTGTTGATTTACGAGGCCCCGCCCCCAAATCCGATATTGTCATGAGCGAAATTAATTTCTGTAAATTTTGTGGGATTTTCTGGACCGAATTCAGATTTTTTTTGGTGAAAATATGATCGCTAGCATCTCTAGAATCCATTTTTTATTGAAAAACCAAACTTTTTYCGCGAAAAACGTCGAAACGAGGCAAAAATCTATAATATTCTGATTTTGCCACGCCGCCTCAAATTAAGACTATTTTTGGTATGGAATTCCGACCGGAAAATTTTTCTTTCGAAGCTTTTTTTTCAAATTCTGACCGGATTTTTTCTGAGTTTTCTTCGGAATTTTTCGGAAAAGAAATAGATTTTAGACTACGGTATTTCAAAGGCGCATGCGAAAAGTTCTCTAGCGGTTTCGAGCGGAACTATTTTACAGTAGTTTTTTTTGCATTTTCGAACTTTTTGGCAATTTTCCACCAATTTTTTTGCGATTTTGTGATCTGAAAATGCGATTTTTAAGTTAAAAGTTTAATTTTAAAAAATTCCGGTTTTTTGAAAATCGGAATTTTCGACAAACTTACACGATGCATGCATTTTTTTGAGCAGAACTAAGCAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37030</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>342004</contig_pos>
        <strand></strand>
        <context>gcgaaaaacg[T/C]cgaaacgagg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTCTAGAATCCATTTTTTATTGAAAAACCAAACTTTTTTCGCGAAAAACG</left_flank>
        <right_flank>CGAAACGAGGCAAAAATCTATAATATTCTGATTTTGCCACGCCGCCTCAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAGATGTGTCCTCCTCAAAAAAATGTATCAAAAAAGGAGAGGTGGGCCGGCCCCTCTTCAGAAGGACTTCTGAATATGTGTCAACATGAGAAGTAGTTGTTTTTAAAGGATTCTGATGACGAACGAAGACAGTTATTGTCAATCATTTTAGCTTGAAGAACAGAGAATTCTTTCAAAATGATTTCACGGAAAGGAGAGCTAAAAATAAAGGAAGACAACTGATTCAACAAAGAAGGAGAAGTAGTTTTTGACTGGGCTTTTTTTTTAATTCCAGGCTTGGGCTAAAAAAATGAAATCAAAAAACCACAAAAAACGATGCTCGTGTTGATTTACGAGGCCCCGCCCCCAAATCCGATATTGTCATGAGCGAAATTAATTTCTGTAAATTTTGTGGGATTTTCTGGACCGAATTCAGATTTTTTTTGGTGAAAATATGATCGCTAGCATCTCTAGAATCCATTTTTTATTGAAAAACCAAACTTTTTTCGCGAAAAACGTCGAAACGAGGCAAAAATCTATAATATTCTGATTTTGCCACGCCGCCTCAAATTAAGACTATTTTTGGTATGGAATTCCGACCGGAAAATTTTTCTTTCGAAGCTTTTTTTTCAAATTCTGACCGGATTTTTTCTGAGTTTTCTTCGGAATTTTTCGGAAAAGAAATAGATTTTAGACTACGGTATTTCAAAGGCGCATGCGAAAAGTTCTCTAGCGGTTTCGAGCGGAACTATTTTACAGTAGTTTTTTTTGCATTTTCGAACTTTTTGGCAATTTTCCACCAATTTTTTTGCGATTTTGTGATCTGAAAATGCGATTTTTAAGTTAAAAGTTTAATTTTAAAAAATTCCGGTTTTTTGAAAATCGGAATTTTCGACAAACTTACACGATGCATGCATTTTTTTGAGCAGAACTAAGCAGACGAACTAGTTAAATGAAAATGCGAAAGTGTCAACTCATTGCTCCTAGACCTCCATCCCCTTTCCCCCAAACAAATTGAA</canonical>
            <polymorphic>AGAAGATGTGTCCTCCTCAAAAAAATGTATCAAAAAAGGAGAGGTGGGCCGGCCCCTCTTCAGAAGGACTTCTGAATATGTGTCAACATGAGAAGTAGTTGTTTTTAAAGGATTCTGATGACGAACGAAGACAGTTATTGTCAATCATTTTAGCTTGAAGAACAGAGAATTCTTTCAAAATGATTTCACGGAAAGGAGAGCTAAAAATAAAGGAAGACAACTGATTCAACAAAGAAGGAGAAGTAGTTTTTGACTGGGCTTTTTTTTTAATTCCAGGCTTGGGCTAAAAAAATGAAATCAAAAAACCACAAAAAACGATGCTCGTGTTGATTTACGAGGCCCCGCCCCCAAATCCGATATTGTCATGAGCGAAATTAATTTCTGTAAATTTTGTGGGATTTTCTGGACCGAATTCAGATTTTTTTTGGTGAAAATATGATCGCTAGCATCTCTAGAATCCATTTTTTATTGAAAAACCAAACTTTTTTCGCGAAAAACGYCGAAACGAGGCAAAAATCTATAATATTCTGATTTTGCCACGCCGCCTCAAATTAAGACTATTTTTGGTATGGAATTCCGACCGGAAAATTTTTCTTTCGAAGCTTTTTTTTCAAATTCTGACCGGATTTTTTCTGAGTTTTCTTCGGAATTTTTCGGAAAAGAAATAGATTTTAGACTACGGTATTTCAAAGGCGCATGCGAAAAGTTCTCTAGCGGTTTCGAGCGGAACTATTTTACAGTAGTTTTTTTTGCATTTTCGAACTTTTTGGCAATTTTCCACCAATTTTTTTGCGATTTTGTGATCTGAAAATGCGATTTTTAAGTTAAAAGTTTAATTTTAAAAAATTCCGGTTTTTTGAAAATCGGAATTTTCGACAAACTTACACGATGCATGCATTTTTTTGAGCAGAACTAAGCAGACGAACTAGTTAAATGAAAATGCGAAAGTGTCAACTCATTGCTCCTAGACCTCCATCCCCTTTCCCCCAAACAAATTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 126 123 115 97 38</canonical_bands>
                <polymorphic_bands>598 126 123 115 38</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGTTTTTGACTGGGCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTCTGCTTAGTTCTGCTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>679</pcr_amplicon_size>
		<canonical_amplicon>TAGTTTTTGACTGGGCTTTTTTTTTAATTCCAGGCTTGGGCTAAAAAAATGAAATCAAAAAACCACAAAAAACGATGCTCGTGTTGATTTACGAGGCCCCGCCCCCAAATCCGATATTGTCATGAGCGAAATTAATTTCTGTAAATTTTGTGGGATTTTCTGGACCGAATTCAGATTTTTTTTGGTGAAAATATGATCGCTAGCATCTCTAGAATCCATTTTTTATTGAAAAACCAAACTTTTTTCGCGAAAAACGTCGAAACGAGGCAAAAATCTATAATATTCTGATTTTGCCACGCCGCCTCAAATTAAGACTATTTTTGGTATGGAATTCCGACCGGAAAATTTTTCTTTCGAAGCTTTTTTTTCAAATTCTGACCGGATTTTTTCTGAGTTTTCTTCGGAATTTTTCGGAAAAGAAATAGATTTTAGACTACGGTATTTCAAAGGCGCATGCGAAAAGTTCTCTAGCGGTTTCGAGCGGAACTATTTTACAGTAGTTTTTTTTGCATTTTCGAACTTTTTGGCAATTTTCCACCAATTTTTTTGCGATTTTGTGATCTGAAAATGCGATTTTTAAGTTAAAAGTTTAATTTTAAAAAATTCCGGTTTTTTGAAAATCGGAATTTTCGACAAACTTACACGATGCATGCATTTTTTTGAGCAGAACTAAGCAGAC</canonical_amplicon>
		<polymorphic_amplicon>TAGTTTTTGACTGGGCTTTTTTTTTAATTCCAGGCTTGGGCTAAAAAAATGAAATCAAAAAACCACAAAAAACGATGCTCGTGTTGATTTACGAGGCCCCGCCCCCAAATCCGATATTGTCATGAGCGAAATTAATTTCTGTAAATTTTGTGGGATTTTCTGGACCGAATTCAGATTTTTTTTGGTGAAAATATGATCGCTAGCATCTCTAGAATCCATTTTTTATTGAAAAACCAAACTTTTTTCGCGAAAAACGYCGAAACGAGGCAAAAATCTATAATATTCTGATTTTGCCACGCCGCCTCAAATTAAGACTATTTTTGGTATGGAATTCCGACCGGAAAATTTTTCTTTCGAAGCTTTTTTTTCAAATTCTGACCGGATTTTTTCTGAGTTTTCTTCGGAATTTTTCGGAAAAGAAATAGATTTTAGACTACGGTATTTCAAAGGCGCATGCGAAAAGTTCTCTAGCGGTTTCGAGCGGAACTATTTTACAGTAGTTTTTTTTGCATTTTCGAACTTTTTGGCAATTTTCCACCAATTTTTTTGCGATTTTGTGATCTGAAAATGCGATTTTTAAGTTAAAAGTTTAATTTTAAAAAATTCCGGTTTTTTGAAAATCGGAATTTTCGACAAACTTACACGATGCATGCATTTTTTTGAGCAGAACTAAGCAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37031</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>342282</contig_pos>
        <strand></strand>
        <context>tggcaatttt[C/T]caccaatttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACTATTTTACAGTAGTTTTTTTTGCATTTTCGAACTTTTTGGCAATTTT</left_flank>
        <right_flank>CACCAATTTTTTTGCGATTTTGTGATCTGAAAATGCGATTTTTAAGTTAA</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGGCTAAAAAAATGAAATCAAAAAACCACAAAAAACGATGCTCGTGTTGATTTACGAGGCCCCGCCCCCAAATCCGATATTGTCATGAGCGAAATTAATTTCTGTAAATTTTGTGGGATTTTCTGGACCGAATTCAGATTTTTTTTGGTGAAAATATGATCGCTAGCATCTCTAGAATCCATTTTTTATTGAAAAACCAAACTTTTTTCGCGAAAAACGTCGAAACGAGGCAAAAATCTATAATATTCTGATTTTGCCACGCCGCCTCAAATTAAGACTATTTTTGGTATGGAATTCCGACCGGAAAATTTTTCTTTCGAAGCTTTTTTTTCAAATTCTGACCGGATTTTTTCTGAGTTTTCTTCGGAATTTTTCGGAAAAGAAATAGATTTTAGACTACGGTATTTCAAAGGCGCATGCGAAAAGTTCTCTAGCGGTTTCGAGCGGAACTATTTTACAGTAGTTTTTTTTGCATTTTCGAACTTTTTGGCAATTTTCCACCAATTTTTTTGCGATTTTGTGATCTGAAAATGCGATTTTTAAGTTAAAAGTTTAATTTTAAAAAATTCCGGTTTTTTGAAAATCGGAATTTTCGACAAACTTACACGATGCATGCATTTTTTTGAGCAGAACTAAGCAGACGAACTAGTTAAATGAAAATGCGAAAGTGTCAACTCATTGCTCCTAGACCTCCATCCCCTTTCCCCCAAACAAATTGAATTTCGTTCAATTTACACAATCTTGGTCGATGAGCTCATCTTTTTTTGTTACTTCTCTTTCACGACTTTTGACTCAAGAGTTGTTTATGTTTATCGAGGAGAAAACGGAATATTATACAAGATTGTGACAATGAGGATCAGGATAGAAGAGAAAGCGTGTAAAAAGTCAGGGGGTCAATATACAGATTACAAGATCAGAAGCAATATTATTAAAATTCTCTGTCAGGGAAGACGAGCGGTGCGACAAGTGTCCATGAGTAGAGTCCAGCGCAAATCCAC</canonical>
            <polymorphic>TTGGGCTAAAAAAATGAAATCAAAAAACCACAAAAAACGATGCTCGTGTTGATTTACGAGGCCCCGCCCCCAAATCCGATATTGTCATGAGCGAAATTAATTTCTGTAAATTTTGTGGGATTTTCTGGACCGAATTCAGATTTTTTTTGGTGAAAATATGATCGCTAGCATCTCTAGAATCCATTTTTTATTGAAAAACCAAACTTTTTTCGCGAAAAACGTCGAAACGAGGCAAAAATCTATAATATTCTGATTTTGCCACGCCGCCTCAAATTAAGACTATTTTTGGTATGGAATTCCGACCGGAAAATTTTTCTTTCGAAGCTTTTTTTTCAAATTCTGACCGGATTTTTTCTGAGTTTTCTTCGGAATTTTTCGGAAAAGAAATAGATTTTAGACTACGGTATTTCAAAGGCGCATGCGAAAAGTTCTCTAGCGGTTTCGAGCGGAACTATTTTACAGTAGTTTTTTTTGCATTTTCGAACTTTTTGGCAATTTTYCACCAATTTTTTTGCGATTTTGTGATCTGAAAATGCGATTTTTAAGTTAAAAGTTTAATTTTAAAAAATTCCGGTTTTTTGAAAATCGGAATTTTCGACAAACTTACACGATGCATGCATTTTTTTGAGCAGAACTAAGCAGACGAACTAGTTAAATGAAAATGCGAAAGTGTCAACTCATTGCTCCTAGACCTCCATCCCCTTTCCCCCAAACAAATTGAATTTCGTTCAATTTACACAATCTTGGTCGATGAGCTCATCTTTTTTTGTTACTTCTCTTTCACGACTTTTGACTCAAGAGTTGTTTATGTTTATCGAGGAGAAAACGGAATATTATACAAGATTGTGACAATGAGGATCAGGATAGAAGAGAAAGCGTGTAAAAAGTCAGGGGGTCAATATACAGATTACAAGATCAGAAGCAATATTATTAAAATTCTCTGTCAGGGAAGACGAGCGGTGCGACAAGTGTCCATGAGTAGAGTCCAGCGCAAATCCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTTTTTGACTGGGCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTCTGCTTAGTTCTGCTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>679</pcr_amplicon_size>
		<canonical_amplicon>TCCACCAATTTTTTTGCGATTTTGTGATCTGAAAATGCGATTTTTAAGTTAAAAGTTTAATTTTAAAAAATTCCGGTTTTTTGAAAATCGGAATTTTCGACAAACTTACACGATGCATGCATTTTTTTGAGCAGAACTAAGCAGAC</canonical_amplicon>
		<polymorphic_amplicon>TYCACCAATTTTTTTGCGATTTTGTGATCTGAAAATGCGATTTTTAAGTTAAAAGTTTAATTTTAAAAAATTCCGGTTTTTTGAAAATCGGAATTTTCGACAAACTTACACGATGCATGCATTTTTTTGAGCAGAACTAAGCAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37032</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>356975</contig_pos>
        <strand>+</strand>
        <context>TCACGGTTTC[A/T]AAAAAAAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTC</left_flank>
        <right_flank>AAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACCAAAACCGAATTCTTTGTTTTTGCACTTTTTTCTGGAGAAATTTTGGAGATATGTATCCCAGTTCAGCTTTGCAAAGTTTTAGTGTTTTTTATTCGATTCAATTCGAATTTATAGGAATTTGTTGTTCTTCAATTTTCGAAATGGTTTCCAATTAGAGTCCGTCTATTTTCCAGACATTTTTTCCAAAAATTTTCATTCAAATTTTTGGCGAATTCTAGTTCGAAGTTCAAGAAAAACATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTT</canonical>
            <polymorphic>ACACCAAAACCGAATTCTTTGTTTTTGCACTTTTTTCTGGAGAAATTTTGGAGATATGTATCCCAGTTCAGCTTTGCAAAGTTTTAGTGTTTTTTATTCGATTCAATTCGAATTTATAGGAATTTGTTGTTCTTCAATTTTCGAAATGGTTTCCAATTAGAGTCCGTCTATTTTCCAGACATTTTTTCCAAAAATTTTCATTCAAATTTTTGGCGAATTCTAGTTCGAAGTTCAAGAAAAACATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCWAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATAGGTAAGAAGCCTGAAACAA</pcr_primer_p1>
		<pcr_primer_p2>TCGGTTAAAAACTGTAATTATTTG</pcr_primer_p2>
		<pcr_amplicon_size>184</pcr_amplicon_size>
		<canonical_amplicon>TATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGA</canonical_amplicon>
		<polymorphic_amplicon>TATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCWAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37033</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>357072</contig_pos>
        <strand></strand>
        <context>taggagagcc[T/C]tcacattatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCC</left_flank>
        <right_flank>TCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGATTCAATTCGAATTTATAGGAATTTGTTGTTCTTCAATTTTCGAAATGGTTTCCAATTAGAGTCCGTCTATTTTCCAGACATTTTTTCCAAAAATTTTCATTCAAATTTTTGGCGAATTCTAGTTCGAAGTTCAAGAAAAACATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATT</canonical>
            <polymorphic>TCGATTCAATTCGAATTTATAGGAATTTGTTGTTCTTCAATTTTCGAAATGGTTTCCAATTAGAGTCCGTCTATTTTCCAGACATTTTTTCCAAAAATTTTCATTCAAATTTTTGGCGAATTCTAGTTCGAAGTTCAAGAAAAACATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCYTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTATCTATCTTGGTCCATCAC</pcr_primer_p1>
		<pcr_primer_p2>GAAAAGTAGGGAATTGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>CTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCYTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37034</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>357089</contig_pos>
        <strand></strand>
        <context>tattaagtta[A/G]agctcaatta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTA</left_flank>
        <right_flank>AGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATAGGAATTTGTTGTTCTTCAATTTTCGAAATGGTTTCCAATTAGAGTCCGTCTATTTTCCAGACATTTTTTCCAAAAATTTTCATTCAAATTTTTGGCGAATTCTAGTTCGAAGTTCAAGAAAAACATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGAC</canonical>
            <polymorphic>TATAGGAATTTGTTGTTCTTCAATTTTCGAAATGGTTTCCAATTAGAGTCCGTCTATTTTCCAGACATTTTTTCCAAAAATTTTCATTCAAATTTTTGGCGAATTCTAGTTCGAAGTTCAAGAAAAACATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTARAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>503 245 198 49 5</canonical_bands>
                <polymorphic_bands>508 245 198 49</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTATCTATCTTGGTCCATCAC</pcr_primer_p1>
		<pcr_primer_p2>GAAAAGTAGGGAATTGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>CTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTARAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37035</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>357157</contig_pos>
        <strand></strand>
        <context>cttctgttat[A/T]atgataaaca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTAT</left_flank>
        <right_flank>ATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAAC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTCCAAAAATTTTCATTCAAATTTTTGGCGAATTCTAGTTCGAAGTTCAAGAAAAACATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGACATAGTTCGTGGCAAGTGACCATCGATCAGAAATCTGATGAGAGATAAGGAAAATGAGAAAATGGATGG</canonical>
            <polymorphic>TTTTTCCAAAAATTTTCATTCAAATTTTTGGCGAATTCTAGTTCGAAGTTCAAGAAAAACATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATWATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGACATAGTTCGTGGCAAGTGACCATCGATCAGAAATCTGATGAGAGATAAGGAAAATGAGAAAATGGATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTATCTATCTTGGTCCATCAC</pcr_primer_p1>
		<pcr_primer_p2>GAAAAGTAGGGAATTGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>CTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATWATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37036</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>357211</contig_pos>
        <strand></strand>
        <context>caggaaccga[G/A]aaaaaatggc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGA</left_flank>
        <right_flank>AAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAA</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAACATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGACATAGTTCGTGGCAAGTGACCATCGATCAGAAATCTGATGAGAGATAAGGAAAATGAGAAAATGGATGGAGAGGGGAATTGATTGACGAGCTCAGAGTGATTTTTGGATCAAAATGGATCTTT</canonical>
            <polymorphic>AAAAACATCAATTTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGARAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGACATAGTTCGTGGCAAGTGACCATCGATCAGAAATCTGATGAGAGATAAGGAAAATGAGAAAATGGATGGAGAGGGGAATTGATTGACGAGCTCAGAGTGATTTTTGGATCAAAATGGATCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTATCTATCTTGGTCCATCAC</pcr_primer_p1>
		<pcr_primer_p2>GAAAAGTAGGGAATTGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>CTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGARAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37037</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>357223</contig_pos>
        <strand></strand>
        <context>aaaaatggct[C/A]aacgttgaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCT</left_flank>
        <right_flank>AACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGACATAGTTCGTGGCAAGTGACCATCGATCAGAAATCTGATGAGAGATAAGGAAAATGAGAAAATGGATGGAGAGGGGAATTGATTGACGAGCTCAGAGTGATTTTTGGATCAAAATGGATCTTTTTCTGGAATTTC</canonical>
            <polymorphic>TTCACGATTATGGAGTTTCTGGAATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTMAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGACATAGTTCGTGGCAAGTGACCATCGATCAGAAATCTGATGAGAGATAAGGAAAATGAGAAAATGGATGGAGAGGGGAATTGATTGACGAGCTCAGAGTGATTTTTGGATCAAAATGGATCTTTTTCTGGAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTATCTATCTTGGTCCATCAC</pcr_primer_p1>
		<pcr_primer_p2>GAAAAGTAGGGAATTGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>347</pcr_amplicon_size>
		<canonical_amplicon>CTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTC</canonical_amplicon>
		<polymorphic_amplicon>CTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTMAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37038</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>357245</contig_pos>
        <strand>+</strand>
        <context>AACCTTCAGG[A/G]TTTACGGCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGG</left_flank>
        <right_flank>TTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGACATAGTTCGTGGCAAGTGACCATCGATCAGAAATCTGATGAGAGATAAGGAAAATGAGAAAATGGATGGAGAGGGGAATTGATTGACGAGCTCAGAGTGATTTTTGGATCAAAATGGATCTTTTTCTGGAATTTCGGAACATATAGAAGCTTCAGAA</canonical>
            <polymorphic>AATGTTTATCACTGAAAACGTATATTTCAATCAATTTCCATTTCTTAGCCTCCCGCGAAGGGCCTTTTTTATTAGAGCGATTCTTCGATTAAAGAGGCTAAACAGTTTTATATAGGTAAGAAGCCTGAAACAAGATCTATCGAGATTGAAAAATTTCCCAAGCCTGTGAAATTTCTCGGAGAGATTCAGAATTTTTTGAACTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGRTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATTCTGGTCCCACTGAGCTCTAACTCTAATACCAATTCCTCCAAGAATAGAGGAATCCACAAAAATCACTTTGTTTTTCTCTCATTTATCAAACAAAAAAGAGGAAAGGCACCGCCAAAAAAGTGTTAGTGTTGGTTTTGGTTTGTATTCAAATGCACACTTTCTGTGAGTGACTCATTTACCATCTACTCTCCCCACTATTTGATTGGTGAGCACCTTTTTGCTCTGATTCCAACCCTCATCTCGACTGGCTCGCCGGAAGTATCAAAAAACCATTGATTCTTCTCATAGGACATAGTTCGTGGCAAGTGACCATCGATCAGAAATCTGATGAGAGATAAGGAAAATGAGAAAATGGATGGAGAGGGGAATTGATTGACGAGCTCAGAGTGATTTTTGGATCAAAATGGATCTTTTTCTGGAATTTCGGAACATATAGAAGCTTCAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>234 162 132 129 68 59 48 39 35 26 24 22 14 8</canonical_bands>
                <polymorphic_bands>234 162 132 129 92 59 48 39 35 26 22 14 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTATCTATCTTGGTCCATCAC</pcr_primer_p1>
		<pcr_primer_p2>AATGTTGAAAAGTAGGGAATTG</pcr_primer_p2>
		<pcr_amplicon_size>353</pcr_amplicon_size>
		<canonical_amplicon>CTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGCTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATT</canonical_amplicon>
		<polymorphic_amplicon>CTTTATCTATCTTGGTCCATCACGGTTTCAAAAAAAAATAATTAGGTCAGATTCTGATAATTCTTGAATTCAAATAATTACAGTTTTTAACCGAGGGCATACCGTAAAACCTAAAATAGGAGAGCCTTCACATTATTAAGTTAAAGCTCAATTATCTCGGTTCCTTCAAAAGATATGAAAAAAGAGTCAACTGACAAAACACTTCTGTTATAATGATAAACAACTTATCAGTTGATAACTTTTTGATATTTTCGACAGGAACCGAGAAAAAATGGCTCAACGTTGAAACAACCTTCAGGRTTTACGGCATCCTAAATTCTAAAAAAAAAACCAATTCCCTACTTTTCAACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37039</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>366686</contig_pos>
        <strand>+</strand>
        <context>GCCATCATTC[A/G]TCGACACCTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGACAAAGACAGCTCTTCTTGCCACGTCATCCACATCCACGCCATCATTC</left_flank>
        <right_flank>TCGACACCTACTCGGCGACGTCGTTGCTCGGCGAAGAAGGACGAATGATT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTAAATTTGAATCAAACGTAAAATTACATTTCTACCAATTTTCATGCTTCCTTCCATGATACTTATGTCTGAAGATATATCCGTTTTTATCCTTTTTCTACCTGTAGTTTAGGCCAAACAAATGTTTTTTATGTGATATTTATGTGACGTTTTGTGAAGTTATGTCTAAAGATATGCCCGTTTTTATCAGTCCGGGTGATTATGCGCCACTTATGTGCCGAAAATAATTTTTGACTTTTTCTATCCAAAACTTTCAGACGAAACGGATACCCTTTAGTTACTTTTTCAGAGCGATTTCTGATTTCGTACAAAAATTTTGAGTTTCTAAAATTGTTATTCTATTTTTTTCCAAAAATGTATTTATTTGATCGAGAACAACATCAACGCGCTCCCAAAACTATTTTTCCAAAATGATGACTTCAGGTGATAAATACGTCGGCTGAGAATGCGACAAAGACAGCTCTTCTTGCCACGTCATCCACATCCACGCCATCATTCGTCGACACCTACTCGGCGACGTCGTTGCTCGGCGAAGAAGGACGAATGATTCTGATAGTCGTCGTCGGTGCCATTTTCGCATTTCTGACGTCGGTTGGAAATTTGATGGTAAGTTTTGAAACACTTTATGGGGTTTCTTAGCAAGTTGACTACAGGGTGCGGCAAAAGTCTTTGTGCATAACTTTGAAGCAAAATTATCCATATTGCTAGTTGTCATACAGTACCCGAAATTTGCAGTTGATACTAAAAGACTATTTGAATATATCTGTCAAATTTTGAAAAAATCTCATGATCCATTCAAAAGTTATAACCATTAGAATTCGCTACCTCAGAATTTCTACTTTTATTTGGACGGTTTTTTGAGATTGAGGGTAGGTTTCTCAAACGTGATGAAAATTAAGTTTTCGCTTCAATATCGCTCTGGTTAAGTGATTAGCTTGATGAACCCATATATCATTCGAATTCACATTTGATGCTCTATTTCACAGCGCAGATTTTACA</canonical>
            <polymorphic>AGTAAATTTGAATCAAACGTAAAATTACATTTCTACCAATTTTCATGCTTCCTTCCATGATACTTATGTCTGAAGATATATCCGTTTTTATCCTTTTTCTACCTGTAGTTTAGGCCAAACAAATGTTTTTTATGTGATATTTATGTGACGTTTTGTGAAGTTATGTCTAAAGATATGCCCGTTTTTATCAGTCCGGGTGATTATGCGCCACTTATGTGCCGAAAATAATTTTTGACTTTTTCTATCCAAAACTTTCAGACGAAACGGATACCCTTTAGTTACTTTTTCAGAGCGATTTCTGATTTCGTACAAAAATTTTGAGTTTCTAAAATTGTTATTCTATTTTTTTCCAAAAATGTATTTATTTGATCGAGAACAACATCAACGCGCTCCCAAAACTATTTTTCCAAAATGATGACTTCAGGTGATAAATACGTCGGCTGAGAATGCGACAAAGACAGCTCTTCTTGCCACGTCATCCACATCCACGCCATCATTCRTCGACACCTACTCGGCGACGTCGTTGCTCGGCGAAGAAGGACGAATGATTCTGATAGTCGTCGTCGGTGCCATTTTCGCATTTCTGACGTCGGTTGGAAATTTGATGGTAAGTTTTGAAACACTTTATGGGGTTTCTTAGCAAGTTGACTACAGGGTGCGGCAAAAGTCTTTGTGCATAACTTTGAAGCAAAATTATCCATATTGCTAGTTGTCATACAGTACCCGAAATTTGCAGTTGATACTAAAAGACTATTTGAATATATCTGTCAAATTTTGAAAAAATCTCATGATCCATTCAAAAGTTATAACCATTAGAATTCGCTACCTCAGAATTTCTACTTTTATTTGGACGGTTTTTTGAGATTGAGGGTAGGTTTCTCAAACGTGATGAAAATTAAGTTTTCGCTTCAATATCGCTCTGGTTAAGTGATTAGCTTGATGAACCCATATATCATTCGAATTCACATTTGATGCTCTATTTCACAGCGCAGATTTTACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>502 354 144</canonical_bands>
                <polymorphic_bands>646 354</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 354 144</canonical_bands>
                <polymorphic_bands>646 354</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>439 408 64 43 29 17</canonical_bands>
                <polymorphic_bands>439 408 81 43 29</polymorphic_bands>
            </assay>
            <assay>
                <site>GTCGAC</site>
                <isoschizomers>
                    <enzyme>SalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTATTTTTCCAAAATGATGA</pcr_primer_p1>
		<pcr_primer_p2>ACTTGCTAAGAAACCCCATAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACTATTTTTCCAAAATGATGACTTCAGGTGATAAATACGTCGGCTGAGAATGCGACAAAGACAGCTCTTCTTGCCACGTCATCCACATCCACGCCATCATTCGTCGACACCTACTCGGCGACGTCGTTGCTCGGCGAAGAAGGACGAATGATTCTGATAGTCGTCGTCGGTGCCATTTTCGCATTTCTGACGTCGGTTGGAAATTTGATGGTAAGTTTTGAAACACTTTATGGGGTTTCTTAGCAAGT</canonical_amplicon>
		<polymorphic_amplicon>AAACTATTTTTCCAAAATGATGACTTCAGGTGATAAATACGTCGGCTGAGAATGCGACAAAGACAGCTCTTCTTGCCACGTCATCCACATCCACGCCATCATTCRTCGACACCTACTCGGCGACGTCGTTGCTCGGCGAAGAAGGACGAATGATTCTGATAGTCGTCGTCGGTGCCATTTTCGCATTTCTGACGTCGGTTGGAAATTTGATGGTAAGTTTTGAAACACTTTATGGGGTTTCTTAGCAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37040</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>380768</contig_pos>
        <strand>+</strand>
        <context>GTTCAACCCA[G/T]ATTTTATTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCCTTTCTATTACAGGTTTTACGGTTTCTCTTTCAAATTTGTTCAACCCA</left_flank>
        <right_flank>ATTTTATTCTTTTACAAACACTTAATCTAGTTAATCTAATGTGACCCCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGTTTTCAATTTCTTTGAAAATTCCAGTTGGAGAATGAATCGTTTTCGCTTTGATCTGGAATTTTTTAGGGGGTTTGAAAACCGAGATTGGGTCATCTTCTGGGTTCTGTTATTTTTAGGTCAAGTTTTGACAATTCGATAAAATGGTTAGGGATTTTTCAAATTATCTGAAAATTTTAGAGTGTATTGAACTAATCTAGATTGACGTGAAACTACGGTTCTCTAAAAGTAAGCCACAAAACTCTCAGTTTATCATAAAACCTGTAATAGAAGGGCATTCACACTGTCGTTTTAGAGCTAATTTTCCTTAGCTTCTATGCAAGATATCAAAAAGTGGTCAACTGGTAAAATGATTATGATAATATGATGAACAATTTATCAGTTGACAACTTTTTGATATCTTCTACAGTGACCGAGAAAAATTAGCTCCTAGTTAAAAATTGGGGGGCCTTTCTATTACAGGTTTTACGGTTTCTCTTTCAAATTTGTTCAACCCATATTTTATTCTTTTACAAACACTTAATCTAGTTAATCTAATGTGACCCCACCTAGATACCGCCCCTTCTTGCTAACGGTTAAATTCGTAGAAAAGAAGGGAAAACATGAGAAATGAGAAATATCTACATTTAGATTCGAAAGGAGTGTGACAGTTATCCCTGTACAATACGGTAAGAACACTTATAGTTCAAAGTCTCACCGTAAATTTAGAAGTGGCTTTTGTTAGCCAATTTGCTGGCCAGTACACCGTAAGTGAGTTAGGGGTTCTTGCTCTCAGCTTCAGAATATTCGCTTCATCCGTATCCAACGTGGCATAAGCACACCAAACTTTGTTACCGTATCCATAGCTAGTTCCGGCTTGAACTGTGACATTATAAGCAGTTGCAGGTTTCAAACCGTCAATTTGTAGACGTGTCAAAGGAATTGGAACTGGGATTGACCTCTTATTGGTTGACATGTTTCCGGACAAGTCGTAGACTTTGACCTAGATATGGACGAGA</canonical>
            <polymorphic>CGAGTTTTCAATTTCTTTGAAAATTCCAGTTGGAGAATGAATCGTTTTCGCTTTGATCTGGAATTTTTTAGGGGGTTTGAAAACCGAGATTGGGTCATCTTCTGGGTTCTGTTATTTTTAGGTCAAGTTTTGACAATTCGATAAAATGGTTAGGGATTTTTCAAATTATCTGAAAATTTTAGAGTGTATTGAACTAATCTAGATTGACGTGAAACTACGGTTCTCTAAAAGTAAGCCACAAAACTCTCAGTTTATCATAAAACCTGTAATAGAAGGGCATTCACACTGTCGTTTTAGAGCTAATTTTCCTTAGCTTCTATGCAAGATATCAAAAAGTGGTCAACTGGTAAAATGATTATGATAATATGATGAACAATTTATCAGTTGACAACTTTTTGATATCTTCTACAGTGACCGAGAAAAATTAGCTCCTAGTTAAAAATTGGGGGGCCTTTCTATTACAGGTTTTACGGTTTCTCTTTCAAATTTGTTCAACCCAKATTTTATTCTTTTACAAACACTTAATCTAGTTAATCTAATGTGACCCCACCTAGATACCGCCCCTTCTTGCTAACGGTTAAATTCGTAGAAAAGAAGGGAAAACATGAGAAATGAGAAATATCTACATTTAGATTCGAAAGGAGTGTGACAGTTATCCCTGTACAATACGGTAAGAACACTTATAGTTCAAAGTCTCACCGTAAATTTAGAAGTGGCTTTTGTTAGCCAATTTGCTGGCCAGTACACCGTAAGTGAGTTAGGGGTTCTTGCTCTCAGCTTCAGAATATTCGCTTCATCCGTATCCAACGTGGCATAAGCACACCAAACTTTGTTACCGTATCCATAGCTAGTTCCGGCTTGAACTGTGACATTATAAGCAGTTGCAGGTTTCAAACCGTCAATTTGTAGACGTGTCAAAGGAATTGGAACTGGGATTGACCTCTTATTGGTTGACATGTTTCCGGACAAGTCGTAGACTTTGACCTAGATATGGACGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTAAGCCACAAAACTCTCAGT</pcr_primer_p1>
		<pcr_primer_p2>GAATTTAACCGTTAGCAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>356</pcr_amplicon_size>
		<canonical_amplicon>AGTAAGCCACAAAACTCTCAGTTTATCATAAAACCTGTAATAGAAGGGCATTCACACTGTCGTTTTAGAGCTAATTTTCCTTAGCTTCTATGCAAGATATCAAAAAGTGGTCAACTGGTAAAATGATTATGATAATATGATGAACAATTTATCAGTTGACAACTTTTTGATATCTTCTACAGTGACCGAGAAAAATTAGCTCCTAGTTAAAAATTGGGGGGCCTTTCTATTACAGGTTTTACGGTTTCTCTTTCAAATTTGTTCAACCCATATTTTATTCTTTTACAAACACTTAATCTAGTTAATCTAATGTGACCCCACCTAGATACCGCCCCTTCTTGCTAACGGTTAAATTC</canonical_amplicon>
		<polymorphic_amplicon>AGTAAGCCACAAAACTCTCAGTTTATCATAAAACCTGTAATAGAAGGGCATTCACACTGTCGTTTTAGAGCTAATTTTCCTTAGCTTCTATGCAAGATATCAAAAAGTGGTCAACTGGTAAAATGATTATGATAATATGATGAACAATTTATCAGTTGACAACTTTTTGATATCTTCTACAGTGACCGAGAAAAATTAGCTCCTAGTTAAAAATTGGGGGGCCTTTCTATTACAGGTTTTACGGTTTCTCTTTCAAATTTGTTCAACCCAKATTTTATTCTTTTACAAACACTTAATCTAGTTAATCTAATGTGACCCCACCTAGATACCGCCCCTTCTTGCTAACGGTTAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37041</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>380813</contig_pos>
        <strand>+</strand>
        <context>TCTAATGTGA[C/T]CCCACCTAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCCATATTTTATTCTTTTACAAACACTTAATCTAGTTAATCTAATGTGA</left_flank>
        <right_flank>CCCACCTAGATACCGCCCCTTCTTGCTAACGGTTAAATTCGTAGAAAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGCTTTGATCTGGAATTTTTTAGGGGGTTTGAAAACCGAGATTGGGTCATCTTCTGGGTTCTGTTATTTTTAGGTCAAGTTTTGACAATTCGATAAAATGGTTAGGGATTTTTCAAATTATCTGAAAATTTTAGAGTGTATTGAACTAATCTAGATTGACGTGAAACTACGGTTCTCTAAAAGTAAGCCACAAAACTCTCAGTTTATCATAAAACCTGTAATAGAAGGGCATTCACACTGTCGTTTTAGAGCTAATTTTCCTTAGCTTCTATGCAAGATATCAAAAAGTGGTCAACTGGTAAAATGATTATGATAATATGATGAACAATTTATCAGTTGACAACTTTTTGATATCTTCTACAGTGACCGAGAAAAATTAGCTCCTAGTTAAAAATTGGGGGGCCTTTCTATTACAGGTTTTACGGTTTCTCTTTCAAATTTGTTCAACCCATATTTTATTCTTTTACAAACACTTAATCTAGTTAATCTAATGTGACCCCACCTAGATACCGCCCCTTCTTGCTAACGGTTAAATTCGTAGAAAAGAAGGGAAAACATGAGAAATGAGAAATATCTACATTTAGATTCGAAAGGAGTGTGACAGTTATCCCTGTACAATACGGTAAGAACACTTATAGTTCAAAGTCTCACCGTAAATTTAGAAGTGGCTTTTGTTAGCCAATTTGCTGGCCAGTACACCGTAAGTGAGTTAGGGGTTCTTGCTCTCAGCTTCAGAATATTCGCTTCATCCGTATCCAACGTGGCATAAGCACACCAAACTTTGTTACCGTATCCATAGCTAGTTCCGGCTTGAACTGTGACATTATAAGCAGTTGCAGGTTTCAAACCGTCAATTTGTAGACGTGTCAAAGGAATTGGAACTGGGATTGACCTCTTATTGGTTGACATGTTTCCGGACAAGTCGTAGACTTTGACCTAGATATGGACGAGATTAGGAATATTAGAATGATCGAAAGTTTACTAGGTGTTGAGTGAT</canonical>
            <polymorphic>TTTCGCTTTGATCTGGAATTTTTTAGGGGGTTTGAAAACCGAGATTGGGTCATCTTCTGGGTTCTGTTATTTTTAGGTCAAGTTTTGACAATTCGATAAAATGGTTAGGGATTTTTCAAATTATCTGAAAATTTTAGAGTGTATTGAACTAATCTAGATTGACGTGAAACTACGGTTCTCTAAAAGTAAGCCACAAAACTCTCAGTTTATCATAAAACCTGTAATAGAAGGGCATTCACACTGTCGTTTTAGAGCTAATTTTCCTTAGCTTCTATGCAAGATATCAAAAAGTGGTCAACTGGTAAAATGATTATGATAATATGATGAACAATTTATCAGTTGACAACTTTTTGATATCTTCTACAGTGACCGAGAAAAATTAGCTCCTAGTTAAAAATTGGGGGGCCTTTCTATTACAGGTTTTACGGTTTCTCTTTCAAATTTGTTCAACCCATATTTTATTCTTTTACAAACACTTAATCTAGTTAATCTAATGTGAYCCCACCTAGATACCGCCCCTTCTTGCTAACGGTTAAATTCGTAGAAAAGAAGGGAAAACATGAGAAATGAGAAATATCTACATTTAGATTCGAAAGGAGTGTGACAGTTATCCCTGTACAATACGGTAAGAACACTTATAGTTCAAAGTCTCACCGTAAATTTAGAAGTGGCTTTTGTTAGCCAATTTGCTGGCCAGTACACCGTAAGTGAGTTAGGGGTTCTTGCTCTCAGCTTCAGAATATTCGCTTCATCCGTATCCAACGTGGCATAAGCACACCAAACTTTGTTACCGTATCCATAGCTAGTTCCGGCTTGAACTGTGACATTATAAGCAGTTGCAGGTTTCAAACCGTCAATTTGTAGACGTGTCAAAGGAATTGGAACTGGGATTGACCTCTTATTGGTTGACATGTTTCCGGACAAGTCGTAGACTTTGACCTAGATATGGACGAGATTAGGAATATTAGAATGATCGAAAGTTTACTAGGTGTTGAGTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>365 186 180 130 105 34</canonical_bands>
                <polymorphic_bands>365 235 186 180 34</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>365 220 180 130 105</canonical_bands>
                <polymorphic_bands>365 235 220 180</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTAAGCCACAAAACTCTCAGT</pcr_primer_p1>
		<pcr_primer_p2>CCCTTCTTTTCTACGAATTTAAC</pcr_primer_p2>
		<pcr_amplicon_size>370</pcr_amplicon_size>
		<canonical_amplicon>AGTAAGCCACAAAACTCTCAGTTTATCATAAAACCTGTAATAGAAGGGCATTCACACTGTCGTTTTAGAGCTAATTTTCCTTAGCTTCTATGCAAGATATCAAAAAGTGGTCAACTGGTAAAATGATTATGATAATATGATGAACAATTTATCAGTTGACAACTTTTTGATATCTTCTACAGTGACCGAGAAAAATTAGCTCCTAGTTAAAAATTGGGGGGCCTTTCTATTACAGGTTTTACGGTTTCTCTTTCAAATTTGTTCAACCCATATTTTATTCTTTTACAAACACTTAATCTAGTTAATCTAATGTGACCCCACCTAGATACCGCCCCTTCTTGCTAACGGTTAAATTCGTAGAAAAGAAGGG</canonical_amplicon>
		<polymorphic_amplicon>AGTAAGCCACAAAACTCTCAGTTTATCATAAAACCTGTAATAGAAGGGCATTCACACTGTCGTTTTAGAGCTAATTTTCCTTAGCTTCTATGCAAGATATCAAAAAGTGGTCAACTGGTAAAATGATTATGATAATATGATGAACAATTTATCAGTTGACAACTTTTTGATATCTTCTACAGTGACCGAGAAAAATTAGCTCCTAGTTAAAAATTGGGGGGCCTTTCTATTACAGGTTTTACGGTTTCTCTTTCAAATTTGTTCAACCCATATTTTATTCTTTTACAAACACTTAATCTAGTTAATCTAATGTGAYCCCACCTAGATACCGCCCCTTCTTGCTAACGGTTAAATTCGTAGAAAAGAAGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37042</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>382291</contig_pos>
        <strand></strand>
        <context>aaaaagtcca[G/A]cttttcatac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTGAAAATTTTCCGGCTTTGCGGCATTGTGCCTTTTCTGAAAAAAGTCCA</left_flank>
        <right_flank>CTTTTCATACTTTTTCAGCTAAAATTTCAAAGTTTCCAAGTTTGTTTTGT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGCTTTTTTTGCATTGGTGGTTTTGCAATTTTCCGATGAGGAATTTCTTTTCTATCTGGAAAAAAACCGATTGCAAAAGTTGCATTGCCTAATTTGATATTTTCTGAATAATGGATTTGGCCCTCTGAATTAGAAAAAATTCGGAGTATCGAAATTCGGAATTTTTGACTATGAGTTCCTCAATTTCCGAATTTTAGAGTTTTTCAATTTCTGATTCCCTCTGAATTCTCAAATATTTCAATTTGAGAGCTCACAGCCTGCCGAAACACGATCGCGCCAAAAAGCCGCCTTCAAATGGTGCGGCGGAGCGCGCCTGTATTTTCAGTGTTAATTTTCAGAGATTTTTTTCAGATGACGATATCTCAGCTCAAACTGAATAAAAAACGATGGGACAACCTACGAATTGTAGAGAAAAAATTTCTTCATCAGATTTTAATATTTTTCAATGTTGAAAATTTTCCGGCTTTGCGGCATTGTGCCTTTTCTGAAAAAAGTCCAGCTTTTCATACTTTTTCAGCTAAAATTTCAAAGTTTCCAAGTTTGTTTTGTATGTATGACATGATACATATGTTTTTGAATCAGAAAAAGACAGTTTTAATAAGATTTTCACGAATACAAGTTGTCGTTTTCTGAATTTTCGAAAATTCGAATTTCTCAGTTTTTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTAAATTTCTAAACTCCTGAATCCCTGAATTTTTGAATTACCGATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTCCAATTTCTTTCTGAATCTAAGAATTATACAAATAATTTTGAGGATTACCACATTTTTGAATTCTGAAGCTTCGATAATTTTTTGTCTAGACATAGTTAGAGCTCGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAGTT</canonical>
            <polymorphic>ATGCTTTTTTTGCATTGGTGGTTTTGCAATTTTCCGATGAGGAATTTCTTTTCTATCTGGAAAAAAACCGATTGCAAAAGTTGCATTGCCTAATTTGATATTTTCTGAATAATGGATTTGGCCCTCTGAATTAGAAAAAATTCGGAGTATCGAAATTCGGAATTTTTGACTATGAGTTCCTCAATTTCCGAATTTTAGAGTTTTTCAATTTCTGATTCCCTCTGAATTCTCAAATATTTCAATTTGAGAGCTCACAGCCTGCCGAAACACGATCGCGCCAAAAAGCCGCCTTCAAATGGTGCGGCGGAGCGCGCCTGTATTTTCAGTGTTAATTTTCAGAGATTTTTTTCAGATGACGATATCTCAGCTCAAACTGAATAAAAAACGATGGGACAACCTACGAATTGTAGAGAAAAAATTTCTTCATCAGATTTTAATATTTTTCAATGTTGAAAATTTTCCGGCTTTGCGGCATTGTGCCTTTTCTGAAAAAAGTCCARCTTTTCATACTTTTTCAGCTAAAATTTCAAAGTTTCCAAGTTTGTTTTGTATGTATGACATGATACATATGTTTTTGAATCAGAAAAAGACAGTTTTAATAAGATTTTCACGAATACAAGTTGTCGTTTTCTGAATTTTCGAAAATTCGAATTTCTCAGTTTTTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTAAATTTCTAAACTCCTGAATCCCTGAATTTTTGAATTACCGATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTCCAATTTCTTTCTGAATCTAAGAATTATACAAATAATTTTGAGGATTACCACATTTTTGAATTCTGAAGCTTCGATAATTTTTTGTCTAGACATAGTTAGAGCTCGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>345 250 133 117 104 33 18</canonical_bands>
                <polymorphic_bands>345 250 151 117 104 33</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>345 129 121 104 97 82 36 33 28 18 7</canonical_bands>
                <polymorphic_bands>345 129 121 104 97 82 54 33 28 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCCCTCTGAATTCTCAAATA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATGTGGTAATCCTCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>638</pcr_amplicon_size>
		<canonical_amplicon>ATTCCCTCTGAATTCTCAAATATTTCAATTTGAGAGCTCACAGCCTGCCGAAACACGATCGCGCCAAAAAGCCGCCTTCAAATGGTGCGGCGGAGCGCGCCTGTATTTTCAGTGTTAATTTTCAGAGATTTTTTTCAGATGACGATATCTCAGCTCAAACTGAATAAAAAACGATGGGACAACCTACGAATTGTAGAGAAAAAATTTCTTCATCAGATTTTAATATTTTTCAATGTTGAAAATTTTCCGGCTTTGCGGCATTGTGCCTTTTCTGAAAAAAGTCCAGCTTTTCATACTTTTTCAGCTAAAATTTCAAAGTTTCCAAGTTTGTTTTGTATGTATGACATGATACATATGTTTTTGAATCAGAAAAAGACAGTTTTAATAAGATTTTCACGAATACAAGTTGTCGTTTTCTGAATTTTCGAAAATTCGAATTTCTCAGTTTTTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTAAATTTCTAAACTCCTGAATCCCTGAATTTTTGAATTACCGATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTCCAATTTCTTTCTGAATCTAAGAATTATACAAATAATTTTGAGGATTACCACATTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTCCCTCTGAATTCTCAAATATTTCAATTTGAGAGCTCACAGCCTGCCGAAACACGATCGCGCCAAAAAGCCGCCTTCAAATGGTGCGGCGGAGCGCGCCTGTATTTTCAGTGTTAATTTTCAGAGATTTTTTTCAGATGACGATATCTCAGCTCAAACTGAATAAAAAACGATGGGACAACCTACGAATTGTAGAGAAAAAATTTCTTCATCAGATTTTAATATTTTTCAATGTTGAAAATTTTCCGGCTTTGCGGCATTGTGCCTTTTCTGAAAAAAGTCCARCTTTTCATACTTTTTCAGCTAAAATTTCAAAGTTTCCAAGTTTGTTTTGTATGTATGACATGATACATATGTTTTTGAATCAGAAAAAGACAGTTTTAATAAGATTTTCACGAATACAAGTTGTCGTTTTCTGAATTTTCGAAAATTCGAATTTCTCAGTTTTTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTAAATTTCTAAACTCCTGAATCCCTGAATTTTTGAATTACCGATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTCCAATTTCTTTCTGAATCTAAGAATTATACAAATAATTTTGAGGATTACCACATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37043</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>382378</contig_pos>
        <strand></strand>
        <context>gaatcagaaa[A/G]agacagtttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAGTTTGTTTTGTATGTATGACATGATACATATGTTTTTGAATCAGAAA</left_flank>
        <right_flank>AGACAGTTTTAATAAGATTTTCACGAATACAAGTTGTCGTTTTCTGAATT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCTAATTTGATATTTTCTGAATAATGGATTTGGCCCTCTGAATTAGAAAAAATTCGGAGTATCGAAATTCGGAATTTTTGACTATGAGTTCCTCAATTTCCGAATTTTAGAGTTTTTCAATTTCTGATTCCCTCTGAATTCTCAAATATTTCAATTTGAGAGCTCACAGCCTGCCGAAACACGATCGCGCCAAAAAGCCGCCTTCAAATGGTGCGGCGGAGCGCGCCTGTATTTTCAGTGTTAATTTTCAGAGATTTTTTTCAGATGACGATATCTCAGCTCAAACTGAATAAAAAACGATGGGACAACCTACGAATTGTAGAGAAAAAATTTCTTCATCAGATTTTAATATTTTTCAATGTTGAAAATTTTCCGGCTTTGCGGCATTGTGCCTTTTCTGAAAAAAGTCCAGCTTTTCATACTTTTTCAGCTAAAATTTCAAAGTTTCCAAGTTTGTTTTGTATGTATGACATGATACATATGTTTTTGAATCAGAAAAAGACAGTTTTAATAAGATTTTCACGAATACAAGTTGTCGTTTTCTGAATTTTCGAAAATTCGAATTTCTCAGTTTTTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTAAATTTCTAAACTCCTGAATCCCTGAATTTTTGAATTACCGATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTCCAATTTCTTTCTGAATCTAAGAATTATACAAATAATTTTGAGGATTACCACATTTTTGAATTCTGAAGCTTCGATAATTTTTTGTCTAGACATAGTTAGAGCTCGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAGTTTTTAAGAAGTAATAAAATGATTACTGTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAAAAATACAGTATTCTGAA</canonical>
            <polymorphic>GCCTAATTTGATATTTTCTGAATAATGGATTTGGCCCTCTGAATTAGAAAAAATTCGGAGTATCGAAATTCGGAATTTTTGACTATGAGTTCCTCAATTTCCGAATTTTAGAGTTTTTCAATTTCTGATTCCCTCTGAATTCTCAAATATTTCAATTTGAGAGCTCACAGCCTGCCGAAACACGATCGCGCCAAAAAGCCGCCTTCAAATGGTGCGGCGGAGCGCGCCTGTATTTTCAGTGTTAATTTTCAGAGATTTTTTTCAGATGACGATATCTCAGCTCAAACTGAATAAAAAACGATGGGACAACCTACGAATTGTAGAGAAAAAATTTCTTCATCAGATTTTAATATTTTTCAATGTTGAAAATTTTCCGGCTTTGCGGCATTGTGCCTTTTCTGAAAAAAGTCCAGCTTTTCATACTTTTTCAGCTAAAATTTCAAAGTTTCCAAGTTTGTTTTGTATGTATGACATGATACATATGTTTTTGAATCAGAAARAGACAGTTTTAATAAGATTTTCACGAATACAAGTTGTCGTTTTCTGAATTTTCGAAAATTCGAATTTCTCAGTTTTTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTAAATTTCTAAACTCCTGAATCCCTGAATTTTTGAATTACCGATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTCCAATTTCTTTCTGAATCTAAGAATTATACAAATAATTTTGAGGATTACCACATTTTTGAATTCTGAAGCTTCGATAATTTTTTGTCTAGACATAGTTAGAGCTCGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAGTTTTTAAGAAGTAATAAAATGATTACTGTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAAAAATACAGTATTCTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCCTCTGAATTCTCAAATA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATGTGGTAATCCTCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>638</pcr_amplicon_size>
		<canonical_amplicon>ATTCCCTCTGAATTCTCAAATATTTCAATTTGAGAGCTCACAGCCTGCCGAAACACGATCGCGCCAAAAAGCCGCCTTCAAATGGTGCGGCGGAGCGCGCCTGTATTTTCAGTGTTAATTTTCAGAGATTTTTTTCAGATGACGATATCTCAGCTCAAACTGAATAAAAAACGATGGGACAACCTACGAATTGTAGAGAAAAAATTTCTTCATCAGATTTTAATATTTTTCAATGTTGAAAATTTTCCGGCTTTGCGGCATTGTGCCTTTTCTGAAAAAAGTCCAGCTTTTCATACTTTTTCAGCTAAAATTTCAAAGTTTCCAAGTTTGTTTTGTATGTATGACATGATACATATGTTTTTGAATCAGAAAAAGACAGTTTTAATAAGATTTTCACGAATACAAGTTGTCGTTTTCTGAATTTTCGAAAATTCGAATTTCTCAGTTTTTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTAAATTTCTAAACTCCTGAATCCCTGAATTTTTGAATTACCGATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTCCAATTTCTTTCTGAATCTAAGAATTATACAAATAATTTTGAGGATTACCACATTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTCCCTCTGAATTCTCAAATATTTCAATTTGAGAGCTCACAGCCTGCCGAAACACGATCGCGCCAAAAAGCCGCCTTCAAATGGTGCGGCGGAGCGCGCCTGTATTTTCAGTGTTAATTTTCAGAGATTTTTTTCAGATGACGATATCTCAGCTCAAACTGAATAAAAAACGATGGGACAACCTACGAATTGTAGAGAAAAAATTTCTTCATCAGATTTTAATATTTTTCAATGTTGAAAATTTTCCGGCTTTGCGGCATTGTGCCTTTTCTGAAAAAAGTCCAGCTTTTCATACTTTTTCAGCTAAAATTTCAAAGTTTCCAAGTTTGTTTTGTATGTATGACATGATACATATGTTTTTGAATCAGAAARAGACAGTTTTAATAAGATTTTCACGAATACAAGTTGTCGTTTTCTGAATTTTCGAAAATTCGAATTTCTCAGTTTTTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTAAATTTCTAAACTCCTGAATCCCTGAATTTTTGAATTACCGATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTCCAATTTCTTTCTGAATCTAAGAATTATACAAATAATTTTGAGGATTACCACATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37044</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>382504</contig_pos>
        <strand></strand>
        <context>ctaaatttct[A/G]aactcctgaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTAAATTTCT</left_flank>
        <right_flank>AACTCCTGAATCCCTGAATTTTTGAATTACCGATTTTGAAGTTGAAGACT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTCCCTCTGAATTCTCAAATATTTCAATTTGAGAGCTCACAGCCTGCCGAAACACGATCGCGCCAAAAAGCCGCCTTCAAATGGTGCGGCGGAGCGCGCCTGTATTTTCAGTGTTAATTTTCAGAGATTTTTTTCAGATGACGATATCTCAGCTCAAACTGAATAAAAAACGATGGGACAACCTACGAATTGTAGAGAAAAAATTTCTTCATCAGATTTTAATATTTTTCAATGTTGAAAATTTTCCGGCTTTGCGGCATTGTGCCTTTTCTGAAAAAAGTCCAGCTTTTCATACTTTTTCAGCTAAAATTTCAAAGTTTCCAAGTTTGTTTTGTATGTATGACATGATACATATGTTTTTGAATCAGAAAAAGACAGTTTTAATAAGATTTTCACGAATACAAGTTGTCGTTTTCTGAATTTTCGAAAATTCGAATTTCTCAGTTTTTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTAAATTTCTAAACTCCTGAATCCCTGAATTTTTGAATTACCGATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTCCAATTTCTTTCTGAATCTAAGAATTATACAAATAATTTTGAGGATTACCACATTTTTGAATTCTGAAGCTTCGATAATTTTTTGTCTAGACATAGTTAGAGCTCGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAGTTTTTAAGAAGTAATAAAATGATTACTGTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAAAAATACAGTATTCTGAATTACATTTTAATGAAGCTAATCTAAATATGAAAAAAAGTTTCCAATAATACATACTTTCGAAATCACGCCCTCGTTTCTGTCGGTAAACACACTGCGTCTTTGACTTTAGAAAAAGAGAATCAGAG</canonical>
            <polymorphic>GATTCCCTCTGAATTCTCAAATATTTCAATTTGAGAGCTCACAGCCTGCCGAAACACGATCGCGCCAAAAAGCCGCCTTCAAATGGTGCGGCGGAGCGCGCCTGTATTTTCAGTGTTAATTTTCAGAGATTTTTTTCAGATGACGATATCTCAGCTCAAACTGAATAAAAAACGATGGGACAACCTACGAATTGTAGAGAAAAAATTTCTTCATCAGATTTTAATATTTTTCAATGTTGAAAATTTTCCGGCTTTGCGGCATTGTGCCTTTTCTGAAAAAAGTCCAGCTTTTCATACTTTTTCAGCTAAAATTTCAAAGTTTCCAAGTTTGTTTTGTATGTATGACATGATACATATGTTTTTGAATCAGAAAAAGACAGTTTTAATAAGATTTTCACGAATACAAGTTGTCGTTTTCTGAATTTTCGAAAATTCGAATTTCTCAGTTTTTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTAAATTTCTRAACTCCTGAATCCCTGAATTTTTGAATTACCGATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTCCAATTTCTTTCTGAATCTAAGAATTATACAAATAATTTTGAGGATTACCACATTTTTGAATTCTGAAGCTTCGATAATTTTTTGTCTAGACATAGTTAGAGCTCGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAGTTTTTAAGAAGTAATAAAATGATTACTGTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAAAAATACAGTATTCTGAATTACATTTTAATGAAGCTAATCTAAATATGAAAAAAAGTTTCCAATAATACATACTTTCGAAATCACGCCCTCGTTTCTGTCGGTAAACACACTGCGTCTTTGACTTTAGAAAAAGAGAATCAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCCTCTGAATTCTCAAATA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATGTGGTAATCCTCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>638</pcr_amplicon_size>
		<canonical_amplicon>ATTCCCTCTGAATTCTCAAATATTTCAATTTGAGAGCTCACAGCCTGCCGAAACACGATCGCGCCAAAAAGCCGCCTTCAAATGGTGCGGCGGAGCGCGCCTGTATTTTCAGTGTTAATTTTCAGAGATTTTTTTCAGATGACGATATCTCAGCTCAAACTGAATAAAAAACGATGGGACAACCTACGAATTGTAGAGAAAAAATTTCTTCATCAGATTTTAATATTTTTCAATGTTGAAAATTTTCCGGCTTTGCGGCATTGTGCCTTTTCTGAAAAAAGTCCAGCTTTTCATACTTTTTCAGCTAAAATTTCAAAGTTTCCAAGTTTGTTTTGTATGTATGACATGATACATATGTTTTTGAATCAGAAAAAGACAGTTTTAATAAGATTTTCACGAATACAAGTTGTCGTTTTCTGAATTTTCGAAAATTCGAATTTCTCAGTTTTTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTAAATTTCTAAACTCCTGAATCCCTGAATTTTTGAATTACCGATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTCCAATTTCTTTCTGAATCTAAGAATTATACAAATAATTTTGAGGATTACCACATTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTCCCTCTGAATTCTCAAATATTTCAATTTGAGAGCTCACAGCCTGCCGAAACACGATCGCGCCAAAAAGCCGCCTTCAAATGGTGCGGCGGAGCGCGCCTGTATTTTCAGTGTTAATTTTCAGAGATTTTTTTCAGATGACGATATCTCAGCTCAAACTGAATAAAAAACGATGGGACAACCTACGAATTGTAGAGAAAAAATTTCTTCATCAGATTTTAATATTTTTCAATGTTGAAAATTTTCCGGCTTTGCGGCATTGTGCCTTTTCTGAAAAAAGTCCAGCTTTTCATACTTTTTCAGCTAAAATTTCAAAGTTTCCAAGTTTGTTTTGTATGTATGACATGATACATATGTTTTTGAATCAGAAAAAGACAGTTTTAATAAGATTTTCACGAATACAAGTTGTCGTTTTCTGAATTTTCGAAAATTCGAATTTCTCAGTTTTTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTAAATTTCTRAACTCCTGAATCCCTGAATTTTTGAATTACCGATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTCCAATTTCTTTCTGAATCTAAGAATTATACAAATAATTTTGAGGATTACCACATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37045</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>382516</contig_pos>
        <strand></strand>
        <context>actcctgaat[C/T]cctgaatttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTCTGAATTTCTAAATTTCTGAATTTCTAAATTTCTAAACTCCTGAAT</left_flank>
        <right_flank>CCTGAATTTTTGAATTACCGATTTTGAAGTTGAAGACTTTAAAAACCAAT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCTCAAATATTTCAATTTGAGAGCTCACAGCCTGCCGAAACACGATCGCGCCAAAAAGCCGCCTTCAAATGGTGCGGCGGAGCGCGCCTGTATTTTCAGTGTTAATTTTCAGAGATTTTTTTCAGATGACGATATCTCAGCTCAAACTGAATAAAAAACGATGGGACAACCTACGAATTGTAGAGAAAAAATTTCTTCATCAGATTTTAATATTTTTCAATGTTGAAAATTTTCCGGCTTTGCGGCATTGTGCCTTTTCTGAAAAAAGTCCAGCTTTTCATACTTTTTCAGCTAAAATTTCAAAGTTTCCAAGTTTGTTTTGTATGTATGACATGATACATATGTTTTTGAATCAGAAAAAGACAGTTTTAATAAGATTTTCACGAATACAAGTTGTCGTTTTCTGAATTTTCGAAAATTCGAATTTCTCAGTTTTTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTAAATTTCTAAACTCCTGAATCCCTGAATTTTTGAATTACCGATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTCCAATTTCTTTCTGAATCTAAGAATTATACAAATAATTTTGAGGATTACCACATTTTTGAATTCTGAAGCTTCGATAATTTTTTGTCTAGACATAGTTAGAGCTCGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAGTTTTTAAGAAGTAATAAAATGATTACTGTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAAAAATACAGTATTCTGAATTACATTTTAATGAAGCTAATCTAAATATGAAAAAAAGTTTCCAATAATACATACTTTCGAAATCACGCCCTCGTTTCTGTCGGTAAACACACTGCGTCTTTGACTTTAGAAAAAGAGAATCAGAGAAAAAAAGAACA</canonical>
            <polymorphic>ATTCTCAAATATTTCAATTTGAGAGCTCACAGCCTGCCGAAACACGATCGCGCCAAAAAGCCGCCTTCAAATGGTGCGGCGGAGCGCGCCTGTATTTTCAGTGTTAATTTTCAGAGATTTTTTTCAGATGACGATATCTCAGCTCAAACTGAATAAAAAACGATGGGACAACCTACGAATTGTAGAGAAAAAATTTCTTCATCAGATTTTAATATTTTTCAATGTTGAAAATTTTCCGGCTTTGCGGCATTGTGCCTTTTCTGAAAAAAGTCCAGCTTTTCATACTTTTTCAGCTAAAATTTCAAAGTTTCCAAGTTTGTTTTGTATGTATGACATGATACATATGTTTTTGAATCAGAAAAAGACAGTTTTAATAAGATTTTCACGAATACAAGTTGTCGTTTTCTGAATTTTCGAAAATTCGAATTTCTCAGTTTTTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTAAATTTCTAAACTCCTGAATYCCTGAATTTTTGAATTACCGATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTCCAATTTCTTTCTGAATCTAAGAATTATACAAATAATTTTGAGGATTACCACATTTTTGAATTCTGAAGCTTCGATAATTTTTTGTCTAGACATAGTTAGAGCTCGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAGTTTTTAAGAAGTAATAAAATGATTACTGTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAAAAATACAGTATTCTGAATTACATTTTAATGAAGCTAATCTAAATATGAAAAAAAGTTTCCAATAATACATACTTTCGAAATCACGCCCTCGTTTCTGTCGGTAAACACACTGCGTCTTTGACTTTAGAAAAAGAGAATCAGAGAAAAAAAGAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>397 352 144 87 20</canonical_bands>
                <polymorphic_bands>397 352 231 20</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>397 352 144 87 20</canonical_bands>
                <polymorphic_bands>397 352 231 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCCCTCTGAATTCTCAAATA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATGTGGTAATCCTCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>638</pcr_amplicon_size>
		<canonical_amplicon>TCCCTGAATTTTTGAATTACCGATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTCCAATTTCTTTCTGAATCTAAGAATTATACAAATAATTTTGAGGATTACCACATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TYCCTGAATTTTTGAATTACCGATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTCCAATTTCTTTCTGAATCTAAGAATTATACAAATAATTTTGAGGATTACCACATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37046</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>382536</contig_pos>
        <strand></strand>
        <context>ttgaattacc[G/A]attttgaagt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTGAATTTCTAAATTTCTAAACTCCTGAATCCCTGAATTTTTGAATTACC</left_flank>
        <right_flank>ATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAGCTCACAGCCTGCCGAAACACGATCGCGCCAAAAAGCCGCCTTCAAATGGTGCGGCGGAGCGCGCCTGTATTTTCAGTGTTAATTTTCAGAGATTTTTTTCAGATGACGATATCTCAGCTCAAACTGAATAAAAAACGATGGGACAACCTACGAATTGTAGAGAAAAAATTTCTTCATCAGATTTTAATATTTTTCAATGTTGAAAATTTTCCGGCTTTGCGGCATTGTGCCTTTTCTGAAAAAAGTCCAGCTTTTCATACTTTTTCAGCTAAAATTTCAAAGTTTCCAAGTTTGTTTTGTATGTATGACATGATACATATGTTTTTGAATCAGAAAAAGACAGTTTTAATAAGATTTTCACGAATACAAGTTGTCGTTTTCTGAATTTTCGAAAATTCGAATTTCTCAGTTTTTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTAAATTTCTAAACTCCTGAATCCCTGAATTTTTGAATTACCGATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTCCAATTTCTTTCTGAATCTAAGAATTATACAAATAATTTTGAGGATTACCACATTTTTGAATTCTGAAGCTTCGATAATTTTTTGTCTAGACATAGTTAGAGCTCGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAGTTTTTAAGAAGTAATAAAATGATTACTGTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAAAAATACAGTATTCTGAATTACATTTTAATGAAGCTAATCTAAATATGAAAAAAAGTTTCCAATAATACATACTTTCGAAATCACGCCCTCGTTTCTGTCGGTAAACACACTGCGTCTTTGACTTTAGAAAAAGAGAATCAGAGAAAAAAAGAACAAGAGAAAAGAGGAAGAGAAA</canonical>
            <polymorphic>GAGAGCTCACAGCCTGCCGAAACACGATCGCGCCAAAAAGCCGCCTTCAAATGGTGCGGCGGAGCGCGCCTGTATTTTCAGTGTTAATTTTCAGAGATTTTTTTCAGATGACGATATCTCAGCTCAAACTGAATAAAAAACGATGGGACAACCTACGAATTGTAGAGAAAAAATTTCTTCATCAGATTTTAATATTTTTCAATGTTGAAAATTTTCCGGCTTTGCGGCATTGTGCCTTTTCTGAAAAAAGTCCAGCTTTTCATACTTTTTCAGCTAAAATTTCAAAGTTTCCAAGTTTGTTTTGTATGTATGACATGATACATATGTTTTTGAATCAGAAAAAGACAGTTTTAATAAGATTTTCACGAATACAAGTTGTCGTTTTCTGAATTTTCGAAAATTCGAATTTCTCAGTTTTTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTAAATTTCTAAACTCCTGAATCCCTGAATTTTTGAATTACCRATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTCCAATTTCTTTCTGAATCTAAGAATTATACAAATAATTTTGAGGATTACCACATTTTTGAATTCTGAAGCTTCGATAATTTTTTGTCTAGACATAGTTAGAGCTCGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAGTTTTTAAGAAGTAATAAAATGATTACTGTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAAAAATACAGTATTCTGAATTACATTTTAATGAAGCTAATCTAAATATGAAAAAAAGTTTCCAATAATACATACTTTCGAAATCACGCCCTCGTTTCTGTCGGTAAACACACTGCGTCTTTGACTTTAGAAAAAGAGAATCAGAGAAAAAAAGAACAAGAGAAAAGAGGAAGAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCCCTCTGAATTCTCAAATA</pcr_primer_p1>
		<pcr_primer_p2>AAAAATGTGGTAATCCTCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>638</pcr_amplicon_size>
		<canonical_amplicon>CGATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTCCAATTTCTTTCTGAATCTAAGAATTATACAAATAATTTTGAGGATTACCACATTTTT</canonical_amplicon>
		<polymorphic_amplicon>CRATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTCCAATTTCTTTCTGAATCTAAGAATTATACAAATAATTTTGAGGATTACCACATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37047</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>382676</contig_pos>
        <strand>+</strand>
        <context>TTTTGTCTAG[A/G]CATAGTTAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGGATTACCACATTTTTGAATTCTGAAGCTTCGATAATTTTTTGTCTAG</left_flank>
        <right_flank>CATAGTTAGAGCTCGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATGGGACAACCTACGAATTGTAGAGAAAAAATTTCTTCATCAGATTTTAATATTTTTCAATGTTGAAAATTTTCCGGCTTTGCGGCATTGTGCCTTTTCTGAAAAAAGTCCAGCTTTTCATACTTTTTCAGCTAAAATTTCAAAGTTTCCAAGTTTGTTTTGTATGTATGACATGATACATATGTTTTTGAATCAGAAAAAGACAGTTTTAATAAGATTTTCACGAATACAAGTTGTCGTTTTCTGAATTTTCGAAAATTCGAATTTCTCAGTTTTTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTAAATTTCTAAACTCCTGAATCCCTGAATTTTTGAATTACCGATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTCCAATTTCTTTCTGAATCTAAGAATTATACAAATAATTTTGAGGATTACCACATTTTTGAATTCTGAAGCTTCGATAATTTTTTGTCTAGACATAGTTAGAGCTCGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAGTTTTTAAGAAGTAATAAAATGATTACTGTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAAAAATACAGTATTCTGAATTACATTTTAATGAAGCTAATCTAAATATGAAAAAAAGTTTCCAATAATACATACTTTCGAAATCACGCCCTCGTTTCTGTCGGTAAACACACTGCGTCTTTGACTTTAGAAAAAGAGAATCAGAGAAAAAAAGAACAAGAGAAAAGAGGAAGAGAAATTTTACACTTAGCAATGATGCTTTCGTACTGCCCCGACTATATATTTTTCCTGGATCTAGGTAGATTAATAGGAGCTACAAAATTAGAAATTTTAATTTCAAATAAAAATTAAAATTTCGGAAAGAATGTAGATAGACAA</canonical>
            <polymorphic>CGATGGGACAACCTACGAATTGTAGAGAAAAAATTTCTTCATCAGATTTTAATATTTTTCAATGTTGAAAATTTTCCGGCTTTGCGGCATTGTGCCTTTTCTGAAAAAAGTCCAGCTTTTCATACTTTTTCAGCTAAAATTTCAAAGTTTCCAAGTTTGTTTTGTATGTATGACATGATACATATGTTTTTGAATCAGAAAAAGACAGTTTTAATAAGATTTTCACGAATACAAGTTGTCGTTTTCTGAATTTTCGAAAATTCGAATTTCTCAGTTTTTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTAAATTTCTAAACTCCTGAATCCCTGAATTTTTGAATTACCGATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTCCAATTTCTTTCTGAATCTAAGAATTATACAAATAATTTTGAGGATTACCACATTTTTGAATTCTGAAGCTTCGATAATTTTTTGTCTAGRCATAGTTAGAGCTCGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAGTTTTTAAGAAGTAATAAAATGATTACTGTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAAAAATACAGTATTCTGAATTACATTTTAATGAAGCTAATCTAAATATGAAAAAAAGTTTCCAATAATACATACTTTCGAAATCACGCCCTCGTTTCTGTCGGTAAACACACTGCGTCTTTGACTTTAGAAAAAGAGAATCAGAGAAAAAAAGAACAAGAGAAAAGAGGAAGAGAAATTTTACACTTAGCAATGATGCTTTCGTACTGCCCCGACTATATATTTTTCCTGGATCTAGGTAGATTAATAGGAGCTACAAAATTAGAAATTTTAATTTCAAATAAAAATTAAAATTTCGGAAAGAATGTAGATAGACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>504 224 109 94 69</canonical_bands>
                <polymorphic_bands>598 224 109 69</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATTTTGAGGATTACCACATTT</pcr_primer_p1>
		<pcr_primer_p2>TTCATATTCTTACGATTGGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TAATTTTGAGGATTACCACATTTTTGAATTCTGAAGCTTCGATAATTTTTTGTCTAGACATAGTTAGAGCTCGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAGTTTTTAAGAAGTAATAAAATGATTACTGTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAA</canonical_amplicon>
		<polymorphic_amplicon>TAATTTTGAGGATTACCACATTTTTGAATTCTGAAGCTTCGATAATTTTTTGTCTAGRCATAGTTAGAGCTCGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAGTTTTTAAGAAGTAATAAAATGATTACTGTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37048</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>382725</contig_pos>
        <strand></strand>
        <context>CAAAAAATGT[G/A]AAGTACTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GACATAGTTAGAGCTCGTATGGGAACTTCAGACTTATTTCCAAAAAATGT</left_flank>
        <right_flank>AAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATATTTTTCAATGTTGAAAATTTTCCGGCTTTGCGGCATTGTGCCTTTTCTGAAAAAAGTCCAGCTTTTCATACTTTTTCAGCTAAAATTTCAAAGTTTCCAAGTTTGTTTTGTATGTATGACATGATACATATGTTTTTGAATCAGAAAAAGACAGTTTTAATAAGATTTTCACGAATACAAGTTGTCGTTTTCTGAATTTTCGAAAATTCGAATTTCTCAGTTTTTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTAAATTTCTAAACTCCTGAATCCCTGAATTTTTGAATTACCGATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTCCAATTTCTTTCTGAATCTAAGAATTATACAAATAATTTTGAGGATTACCACATTTTTGAATTCTGAAGCTTCGATAATTTTTTGTCTAGACATAGTTAGAGCTCGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAGTTTTTAAGAAGTAATAAAATGATTACTGTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAAAAATACAGTATTCTGAATTACATTTTAATGAAGCTAATCTAAATATGAAAAAAAGTTTCCAATAATACATACTTTCGAAATCACGCCCTCGTTTCTGTCGGTAAACACACTGCGTCTTTGACTTTAGAAAAAGAGAATCAGAGAAAAAAAGAACAAGAGAAAAGAGGAAGAGAAATTTTACACTTAGCAATGATGCTTTCGTACTGCCCCGACTATATATTTTTCCTGGATCTAGGTAGATTAATAGGAGCTACAAAATTAGAAATTTTAATTTCAAATAAAAATTAAAATTTCGGAAAGAATGTAGATAGACAAGACAACGAATTAAAAACATGCGAAAAGTGATGGAAAGAAGTTTCGCGAA</canonical>
            <polymorphic>TAATATTTTTCAATGTTGAAAATTTTCCGGCTTTGCGGCATTGTGCCTTTTCTGAAAAAAGTCCAGCTTTTCATACTTTTTCAGCTAAAATTTCAAAGTTTCCAAGTTTGTTTTGTATGTATGACATGATACATATGTTTTTGAATCAGAAAAAGACAGTTTTAATAAGATTTTCACGAATACAAGTTGTCGTTTTCTGAATTTTCGAAAATTCGAATTTCTCAGTTTTTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTAAATTTCTAAACTCCTGAATCCCTGAATTTTTGAATTACCGATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTCCAATTTCTTTCTGAATCTAAGAATTATACAAATAATTTTGAGGATTACCACATTTTTGAATTCTGAAGCTTCGATAATTTTTTGTCTAGACATAGTTAGAGCTCGTATGGGAACTTCAGACTTATTTCCAAAAAATGTRAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAGTTTTTAAGAAGTAATAAAATGATTACTGTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAAAAATACAGTATTCTGAATTACATTTTAATGAAGCTAATCTAAATATGAAAAAAAGTTTCCAATAATACATACTTTCGAAATCACGCCCTCGTTTCTGTCGGTAAACACACTGCGTCTTTGACTTTAGAAAAAGAGAATCAGAGAAAAAAAGAACAAGAGAAAAGAGGAAGAGAAATTTTACACTTAGCAATGATGCTTTCGTACTGCCCCGACTATATATTTTTCCTGGATCTAGGTAGATTAATAGGAGCTACAAAATTAGAAATTTTAATTTCAAATAAAAATTAAAATTTCGGAAAGAATGTAGATAGACAAGACAACGAATTAAAAACATGCGAAAAGTGATGGAAAGAAGTTTCGCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>235 219 162 131 89 73 45 24 20 2</canonical_bands>
                <polymorphic_bands>308 235 162 131 73 45 24 20 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATTTTGAGGATTACCACATTT</pcr_primer_p1>
		<pcr_primer_p2>TTCATATTCTTACGATTGGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TAATTTTGAGGATTACCACATTTTTGAATTCTGAAGCTTCGATAATTTTTTGTCTAGACATAGTTAGAGCTCGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAGTTTTTAAGAAGTAATAAAATGATTACTGTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAA</canonical_amplicon>
		<polymorphic_amplicon>TAATTTTGAGGATTACCACATTTTTGAATTCTGAAGCTTCGATAATTTTTTGTCTAGACATAGTTAGAGCTCGTATGGGAACTTCAGACTTATTTCCAAAAAATGTRAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAGTTTTTAAGAAGTAATAAAATGATTACTGTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37049</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>382786</contig_pos>
        <strand>+</strand>
        <context>TTTCTCAAAA[G/T]CAGYTTTTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAA</left_flank>
        <right_flank>CAGTTTTTAAGAAGTAATAAAATGATTACTGTTCATATTTTTGAAATTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAGCTTTTCATACTTTTTCAGCTAAAATTTCAAAGTTTCCAAGTTTGTTTTGTATGTATGACATGATACATATGTTTTTGAATCAGAAAAAGACAGTTTTAATAAGATTTTCACGAATACAAGTTGTCGTTTTCTGAATTTTCGAAAATTCGAATTTCTCAGTTTTTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTAAATTTCTAAACTCCTGAATCCCTGAATTTTTGAATTACCGATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTCCAATTTCTTTCTGAATCTAAGAATTATACAAATAATTTTGAGGATTACCACATTTTTGAATTCTGAAGCTTCGATAATTTTTTGTCTAGACATAGTTAGAGCTCGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAGTTTTTAAGAAGTAATAAAATGATTACTGTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAAAAATACAGTATTCTGAATTACATTTTAATGAAGCTAATCTAAATATGAAAAAAAGTTTCCAATAATACATACTTTCGAAATCACGCCCTCGTTTCTGTCGGTAAACACACTGCGTCTTTGACTTTAGAAAAAGAGAATCAGAGAAAAAAAGAACAAGAGAAAAGAGGAAGAGAAATTTTACACTTAGCAATGATGCTTTCGTACTGCCCCGACTATATATTTTTCCTGGATCTAGGTAGATTAATAGGAGCTACAAAATTAGAAATTTTAATTTCAAATAAAAATTAAAATTTCGGAAAGAATGTAGATAGACAAGACAACGAATTAAAAACATGCGAAAAGTGATGGAAAGAAGTTTCGCGAACATTTCAAAATCATTATATTAGTCATCCTAATCCCATGACTTCTGTTTAGTTATTGTCATC</canonical>
            <polymorphic>TCCAGCTTTTCATACTTTTTCAGCTAAAATTTCAAAGTTTCCAAGTTTGTTTTGTATGTATGACATGATACATATGTTTTTGAATCAGAAAAAGACAGTTTTAATAAGATTTTCACGAATACAAGTTGTCGTTTTCTGAATTTTCGAAAATTCGAATTTCTCAGTTTTTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTAAATTTCTAAACTCCTGAATCCCTGAATTTTTGAATTACCGATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTCCAATTTCTTTCTGAATCTAAGAATTATACAAATAATTTTGAGGATTACCACATTTTTGAATTCTGAAGCTTCGATAATTTTTTGTCTAGACATAGTTAGAGCTCGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAAKCAGTTTTTAAGAAGTAATAAAATGATTACTGTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAAAAATACAGTATTCTGAATTACATTTTAATGAAGCTAATCTAAATATGAAAAAAAGTTTCCAATAATACATACTTTCGAAATCACGCCCTCGTTTCTGTCGGTAAACACACTGCGTCTTTGACTTTAGAAAAAGAGAATCAGAGAAAAAAAGAACAAGAGAAAAGAGGAAGAGAAATTTTACACTTAGCAATGATGCTTTCGTACTGCCCCGACTATATATTTTTCCTGGATCTAGGTAGATTAATAGGAGCTACAAAATTAGAAATTTTAATTTCAAATAAAAATTAAAATTTCGGAAAGAATGTAGATAGACAAGACAACGAATTAAAAACATGCGAAAAGTGATGGAAAGAAGTTTCGCGAACATTTCAAAATCATTATATTAGTCATCCTAATCCCATGACTTCTGTTTAGTTATTGTCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATTTTGAGGATTACCACATTT</pcr_primer_p1>
		<pcr_primer_p2>TTCATATTCTTACGATTGGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TAATTTTGAGGATTACCACATTTTTGAATTCTGAAGCTTCGATAATTTTTTGTCTAGACATAGTTAGAGCTCGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAGTTTTTAAGAAGTAATAAAATGATTACTGTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAA</canonical_amplicon>
		<polymorphic_amplicon>TAATTTTGAGGATTACCACATTTTTGAATTCTGAAGCTTCGATAATTTTTTGTCTAGACATAGTTAGAGCTCGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAAKCAGTTTTTAAGAAGTAATAAAATGATTACTGTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37050</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>382790</contig_pos>
        <strand>+</strand>
        <context>TCAAAAKCAG[C/T]TTTTAAGAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAG</left_flank>
        <right_flank>TTTTAAGAAGTAATAAAATGATTACTGTTCATATTTTTGAAATTGATAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTTTCATACTTTTTCAGCTAAAATTTCAAAGTTTCCAAGTTTGTTTTGTATGTATGACATGATACATATGTTTTTGAATCAGAAAAAGACAGTTTTAATAAGATTTTCACGAATACAAGTTGTCGTTTTCTGAATTTTCGAAAATTCGAATTTCTCAGTTTTTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTAAATTTCTAAACTCCTGAATCCCTGAATTTTTGAATTACCGATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTCCAATTTCTTTCTGAATCTAAGAATTATACAAATAATTTTGAGGATTACCACATTTTTGAATTCTGAAGCTTCGATAATTTTTTGTCTAGACATAGTTAGAGCTCGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAGTTTTTAAGAAGTAATAAAATGATTACTGTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAAAAATACAGTATTCTGAATTACATTTTAATGAAGCTAATCTAAATATGAAAAAAAGTTTCCAATAATACATACTTTCGAAATCACGCCCTCGTTTCTGTCGGTAAACACACTGCGTCTTTGACTTTAGAAAAAGAGAATCAGAGAAAAAAAGAACAAGAGAAAAGAGGAAGAGAAATTTTACACTTAGCAATGATGCTTTCGTACTGCCCCGACTATATATTTTTCCTGGATCTAGGTAGATTAATAGGAGCTACAAAATTAGAAATTTTAATTTCAAATAAAAATTAAAATTTCGGAAAGAATGTAGATAGACAAGACAACGAATTAAAAACATGCGAAAAGTGATGGAAAGAAGTTTCGCGAACATTTCAAAATCATTATATTAGTCATCCTAATCCCATGACTTCTGTTTAGTTATTGTCATCTTTT</canonical>
            <polymorphic>GCTTTTCATACTTTTTCAGCTAAAATTTCAAAGTTTCCAAGTTTGTTTTGTATGTATGACATGATACATATGTTTTTGAATCAGAAAAAGACAGTTTTAATAAGATTTTCACGAATACAAGTTGTCGTTTTCTGAATTTTCGAAAATTCGAATTTCTCAGTTTTTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTAAATTTCTAAACTCCTGAATCCCTGAATTTTTGAATTACCGATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTCCAATTTCTTTCTGAATCTAAGAATTATACAAATAATTTTGAGGATTACCACATTTTTGAATTCTGAAGCTTCGATAATTTTTTGTCTAGACATAGTTAGAGCTCGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAGYTTTTAAGAAGTAATAAAATGATTACTGTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAAAAATACAGTATTCTGAATTACATTTTAATGAAGCTAATCTAAATATGAAAAAAAGTTTCCAATAATACATACTTTCGAAATCACGCCCTCGTTTCTGTCGGTAAACACACTGCGTCTTTGACTTTAGAAAAAGAGAATCAGAGAAAAAAAGAACAAGAGAAAAGAGGAAGAGAAATTTTACACTTAGCAATGATGCTTTCGTACTGCCCCGACTATATATTTTTCCTGGATCTAGGTAGATTAATAGGAGCTACAAAATTAGAAATTTTAATTTCAAATAAAAATTAAAATTTCGGAAAGAATGTAGATAGACAAGACAACGAATTAAAAACATGCGAAAAGTGATGGAAAGAAGTTTCGCGAACATTTCAAAATCATTATATTAGTCATCCTAATCCCATGACTTCTGTTTAGTTATTGTCATCTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATTTTGAGGATTACCACATTT</pcr_primer_p1>
		<pcr_primer_p2>TTCATATTCTTACGATTGGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TAATTTTGAGGATTACCACATTTTTGAATTCTGAAGCTTCGATAATTTTTTGTCTAGACATAGTTAGAGCTCGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAGTTTTTAAGAAGTAATAAAATGATTACTGTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAA</canonical_amplicon>
		<polymorphic_amplicon>TAATTTTGAGGATTACCACATTTTTGAATTCTGAAGCTTCGATAATTTTTTGTCTAGACATAGTTAGAGCTCGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAGYTTTTAAGAAGTAATAAAATGATTACTGTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37051</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>382817</contig_pos>
        <strand>+</strand>
        <context>AATGATTACT[A/G]TTCATATTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAACCTAATTTCTCAAAATCAGTTTTTAAGAAGTAATAAAATGATTACT</left_flank>
        <right_flank>TTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAAAAATAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAAGTTTCCAAGTTTGTTTTGTATGTATGACATGATACATATGTTTTTGAATCAGAAAAAGACAGTTTTAATAAGATTTTCACGAATACAAGTTGTCGTTTTCTGAATTTTCGAAAATTCGAATTTCTCAGTTTTTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTAAATTTCTAAACTCCTGAATCCCTGAATTTTTGAATTACCGATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTCCAATTTCTTTCTGAATCTAAGAATTATACAAATAATTTTGAGGATTACCACATTTTTGAATTCTGAAGCTTCGATAATTTTTTGTCTAGACATAGTTAGAGCTCGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAGTTTTTAAGAAGTAATAAAATGATTACTGTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAAAAATACAGTATTCTGAATTACATTTTAATGAAGCTAATCTAAATATGAAAAAAAGTTTCCAATAATACATACTTTCGAAATCACGCCCTCGTTTCTGTCGGTAAACACACTGCGTCTTTGACTTTAGAAAAAGAGAATCAGAGAAAAAAAGAACAAGAGAAAAGAGGAAGAGAAATTTTACACTTAGCAATGATGCTTTCGTACTGCCCCGACTATATATTTTTCCTGGATCTAGGTAGATTAATAGGAGCTACAAAATTAGAAATTTTAATTTCAAATAAAAATTAAAATTTCGGAAAGAATGTAGATAGACAAGACAACGAATTAAAAACATGCGAAAAGTGATGGAAAGAAGTTTCGCGAACATTTCAAAATCATTATATTAGTCATCCTAATCCCATGACTTCTGTTTAGTTATTGTCATCTTTTTTTCCGTTTCCTTAGTATGACGTTTGT</canonical>
            <polymorphic>TCAAAGTTTCCAAGTTTGTTTTGTATGTATGACATGATACATATGTTTTTGAATCAGAAAAAGACAGTTTTAATAAGATTTTCACGAATACAAGTTGTCGTTTTCTGAATTTTCGAAAATTCGAATTTCTCAGTTTTTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTAAATTTCTAAACTCCTGAATCCCTGAATTTTTGAATTACCGATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTCCAATTTCTTTCTGAATCTAAGAATTATACAAATAATTTTGAGGATTACCACATTTTTGAATTCTGAAGCTTCGATAATTTTTTGTCTAGACATAGTTAGAGCTCGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAGTTTTTAAGAAGTAATAAAATGATTACTRTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAAAAATACAGTATTCTGAATTACATTTTAATGAAGCTAATCTAAATATGAAAAAAAGTTTCCAATAATACATACTTTCGAAATCACGCCCTCGTTTCTGTCGGTAAACACACTGCGTCTTTGACTTTAGAAAAAGAGAATCAGAGAAAAAAAGAACAAGAGAAAAGAGGAAGAGAAATTTTACACTTAGCAATGATGCTTTCGTACTGCCCCGACTATATATTTTTCCTGGATCTAGGTAGATTAATAGGAGCTACAAAATTAGAAATTTTAATTTCAAATAAAAATTAAAATTTCGGAAAGAATGTAGATAGACAAGACAACGAATTAAAAACATGCGAAAAGTGATGGAAAGAAGTTTCGCGAACATTTCAAAATCATTATATTAGTCATCCTAATCCCATGACTTCTGTTTAGTTATTGTCATCTTTTTTTCCGTTTCCTTAGTATGACGTTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>449 433 66 52</canonical_bands>
                <polymorphic_bands>485 449 66</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTATGGGAACTTCAGACTTAT</pcr_primer_p1>
		<pcr_primer_p2>TCGAAAGTATGTATTATTGGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAGTTTTTAAGAAGTAATAAAATGATTACTGTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAAAAATACAGTATTCTGAATTACATTTTAATGAAGCTAATCTAAATATGAAAAAAAGTTTCCAATAATACATACTTTCGA</canonical_amplicon>
		<polymorphic_amplicon>CGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAGTTTTTAAGAAGTAATAAAATGATTACTRTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAAAAATACAGTATTCTGAATTACATTTTAATGAAGCTAATCTAAATATGAAAAAAAGTTTCCAATAATACATACTTTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37052</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>382866</contig_pos>
        <strand>+</strand>
        <context>TATGAAAAAT[A/C]CAGTATTCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAAAAAT</left_flank>
        <right_flank>CAGTATTCTGAATTACATTTTAATGAAGCTAATCTAAATATGAAAAAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAATCAGAAAAAGACAGTTTTAATAAGATTTTCACGAATACAAGTTGTCGTTTTCTGAATTTTCGAAAATTCGAATTTCTCAGTTTTTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTAAATTTCTAAACTCCTGAATCCCTGAATTTTTGAATTACCGATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTCCAATTTCTTTCTGAATCTAAGAATTATACAAATAATTTTGAGGATTACCACATTTTTGAATTCTGAAGCTTCGATAATTTTTTGTCTAGACATAGTTAGAGCTCGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAGTTTTTAAGAAGTAATAAAATGATTACTGTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAAAAATACAGTATTCTGAATTACATTTTAATGAAGCTAATCTAAATATGAAAAAAAGTTTCCAATAATACATACTTTCGAAATCACGCCCTCGTTTCTGTCGGTAAACACACTGCGTCTTTGACTTTAGAAAAAGAGAATCAGAGAAAAAAAGAACAAGAGAAAAGAGGAAGAGAAATTTTACACTTAGCAATGATGCTTTCGTACTGCCCCGACTATATATTTTTCCTGGATCTAGGTAGATTAATAGGAGCTACAAAATTAGAAATTTTAATTTCAAATAAAAATTAAAATTTCGGAAAGAATGTAGATAGACAAGACAACGAATTAAAAACATGCGAAAAGTGATGGAAAGAAGTTTCGCGAACATTTCAAAATCATTATATTAGTCATCCTAATCCCATGACTTCTGTTTAGTTATTGTCATCTTTTTTTCCGTTTCCTTAGTATGACGTTTGTTAAAACGTATGTTCAAATAGGTCATAATTTTCTGACGCTTCAAAAAAAT</canonical>
            <polymorphic>TGAATCAGAAAAAGACAGTTTTAATAAGATTTTCACGAATACAAGTTGTCGTTTTCTGAATTTTCGAAAATTCGAATTTCTCAGTTTTTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTAAATTTCTAAACTCCTGAATCCCTGAATTTTTGAATTACCGATTTTGAAGTTGAAGACTTTAAAAACCAATTATCAAATTTTCGAGACTTCCAATTTCTTTCTGAATCTAAGAATTATACAAATAATTTTGAGGATTACCACATTTTTGAATTCTGAAGCTTCGATAATTTTTTGTCTAGACATAGTTAGAGCTCGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAGTTTTTAAGAAGTAATAAAATGATTACTGTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAAAAATMCAGTATTCTGAATTACATTTTAATGAAGCTAATCTAAATATGAAAAAAAGTTTCCAATAATACATACTTTCGAAATCACGCCCTCGTTTCTGTCGGTAAACACACTGCGTCTTTGACTTTAGAAAAAGAGAATCAGAGAAAAAAAGAACAAGAGAAAAGAGGAAGAGAAATTTTACACTTAGCAATGATGCTTTCGTACTGCCCCGACTATATATTTTTCCTGGATCTAGGTAGATTAATAGGAGCTACAAAATTAGAAATTTTAATTTCAAATAAAAATTAAAATTTCGGAAAGAATGTAGATAGACAAGACAACGAATTAAAAACATGCGAAAAGTGATGGAAAGAAGTTTCGCGAACATTTCAAAATCATTATATTAGTCATCCTAATCCCATGACTTCTGTTTAGTTATTGTCATCTTTTTTTCCGTTTCCTTAGTATGACGTTTGTTAAAACGTATGTTCAAATAGGTCATAATTTTCTGACGCTTCAAAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>498 433 52 17</canonical_bands>
                <polymorphic_bands>550 433 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTATGGGAACTTCAGACTTAT</pcr_primer_p1>
		<pcr_primer_p2>TCGAAAGTATGTATTATTGGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAGTTTTTAAGAAGTAATAAAATGATTACTGTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAAAAATACAGTATTCTGAATTACATTTTAATGAAGCTAATCTAAATATGAAAAAAAGTTTCCAATAATACATACTTTCGA</canonical_amplicon>
		<polymorphic_amplicon>CGTATGGGAACTTCAGACTTATTTCCAAAAAATGTGAAGTACTTTCAAAGGGCAAAAAAAGTTTGAAATAGAAAAATGAAACCTAATTTCTCAAAATCAGTTTTTAAGAAGTAATAAAATGATTACTGTTCATATTTTTGAAATTGATAGAAACCAATCGTAAGAATATGAAAAATMCAGTATTCTGAATTACATTTTAATGAAGCTAATCTAAATATGAAAAAAAGTTTCCAATAATACATACTTTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37053</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>480584</contig_pos>
        <strand></strand>
        <context>ACTTTTTTTT[T/C]YAACTTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTAAATCGACAATATCCCATTTGATGTAAACTTTGAGCACTTTTTTTT</left_flank>
        <right_flank>CAACTTTTCAGTTTTCTTCGGGATTTTTGAATACATTTCACACCCTTTGG</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACTGTCGAATCAAAAACTGGGACCTGGAAAATTTCGCGGGCGGCTTCCGTACCGATTTACGGGGTCTCGCCCAAAAATCACAACAGTAGTACATGAAGTTTATTTCTGTGAATTTAGGGGGATTTTCTGGACCAAATTCTGATTTCTTGGTATGTAAGTGATCACTAGCATCTCTAGAATCTGTTTTTCGGTGAAAAACCGAACTTAATTGCGGAAGTAGCTCGAACGAGGTAAAAGCCTGAAATGTTACGATTTTGCCGCACTTTTTCGTAGATCAAAAAAGCGATGGTTTTCAAACTCTCAGGTCCCCACTTGGNNNNNNNNNNTAGATCATGATCTAGTTCAAACCCGCGTTCATTTTGAAATTATTAAATTTCTTCTGGCCTACAAGTTTGCTGGGGCGCTTTTTCTGACCCCCTAGCTTGAACCCAAGTGGGTCCCAGCTTTTTTTTAAATCGACAATATCCCATTTGATGTAAACTTTGAGCACTTTTTTTTTCAACTTTTCAGTTTTCTTCGGGATTTTTGAATACATTTCACACCCTTTGGAAAAAATATCACTTTGAACCATAATGATAGTTTTCAGAATTGGTAAACATCTTCAAGGTTCAAAGCAGTTTTCATTGTAGAGAATAAATTTTTGATGCCACACCAACTGCAGTCGCTGCTTGCTCATCCGAAAAACTTCATTTGATTTTTATGTCGCAAACATATTACATTGTACACAGAGATCTGGTTAAATTTAATATATATTGAGTATCAAAATCAAAGTAAACAGGTCAGGTTTACAAGTCAATGTTTTTCAACGAAGCTAATTGGAATAGCACGAGAACTGTTGGCAGAGCCTTTTGGGGCTTCGATTTGAAGCTTTCCGTCGTTGGAAATCGCAGATCTGAGAGCAGTCAAATCAACGTCCTCTGGCATCAGGAACATCTTCGAGAAGCATCTTTTCGAATATCCATGCTCAGATTTCATCTCTTGACATCCTTCGATTTTAAG</canonical>
            <polymorphic>TACTGTCGAATCAAAAACTGGGACCTGGAAAATTTCGCGGGCGGCTTCCGTACCGATTTACGGGGTCTCGCCCAAAAATCACAACAGTAGTACATGAAGTTTATTTCTGTGAATTTAGGGGGATTTTCTGGACCAAATTCTGATTTCTTGGTATGTAAGTGATCACTAGCATCTCTAGAATCTGTTTTTCGGTGAAAAACCGAACTTAATTGCGGAAGTAGCTCGAACGAGGTAAAAGCCTGAAATGTTACGATTTTGCCGCACTTTTTCGTAGATCAAAAAAGCGATGGTTTTCAAACTCTCAGGTCCCCACTTGGNNNNNNNNNNTAGATCATGATCTAGTTCAAACCCGCGTTCATTTTGAAATTATTAAATTTCTTCTGGCCTACAAGTTTGCTGGGGCGCTTTTTCTGACCCCCTAGCTTGAACCCAAGTGGGTCCCAGCTTTTTTTTAAATCGACAATATCCCATTTGATGTAAACTTTGAGCACTTTTTTTTYCAACTTTTCAGTTTTCTTCGGGATTTTTGAATACATTTCACACCCTTTGGAAAAAATATCACTTTGAACCATAATGATAGTTTTCAGAATTGGTAAACATCTTCAAGGTTCAAAGCAGTTTTCATTGTAGAGAATAAATTTTTGATGCCACACCAACTGCAGTCGCTGCTTGCTCATCCGAAAAACTTCATTTGATTTTTATGTCGCAAACATATTACATTGTACACAGAGATCTGGTTAAATTTAATATATATTGAGTATCAAAATCAAAGTAAACAGGTCAGGTTTACAAGTCAATGTTTTTCAACGAAGCTAATTGGAATAGCACGAGAACTGTTGGCAGAGCCTTTTGGGGCTTCGATTTGAAGCTTTCCGTCGTTGGAAATCGCAGATCTGAGAGCAGTCAAATCAACGTCCTCTGGCATCAGGAACATCTTCGAGAAGCATCTTTTCGAATATCCATGCTCAGATTTCATCTCTTGACATCCTTCGATTTTAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAATTCTGATGAAGACCTAGT</pcr_primer_p1>
		<pcr_primer_p2>TCATTATGGTTCAAAGTGATATTT</pcr_primer_p2>
		<pcr_amplicon_size>602</pcr_amplicon_size>
		<canonical_amplicon>TTCAACTTTTCAGTTTTCTTCGGGATTTTTGAATACATTTCACACCCTTTGGAAAAAATATCACTTTGAACCATAATGA</canonical_amplicon>
		<polymorphic_amplicon>TYCAACTTTTCAGTTTTCTTCGGGATTTTTGAATACATTTCACACCCTTTGGAAAAAATATCACTTTGAACCATAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37054</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>480585</contig_pos>
        <strand></strand>
        <context>CTTTTTTTTY[C/T]AACTTTTCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTAAATCGACAATATCCCATTTGATGTAAACTTTGAGCACTTTTTTTTT</left_flank>
        <right_flank>AACTTTTCAGTTTTCTTCGGGATTTTTGAATACATTTCACACCCTTTGGA</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGTCGAATCAAAAACTGGGACCTGGAAAATTTCGCGGGCGGCTTCCGTACCGATTTACGGGGTCTCGCCCAAAAATCACAACAGTAGTACATGAAGTTTATTTCTGTGAATTTAGGGGGATTTTCTGGACCAAATTCTGATTTCTTGGTATGTAAGTGATCACTAGCATCTCTAGAATCTGTTTTTCGGTGAAAAACCGAACTTAATTGCGGAAGTAGCTCGAACGAGGTAAAAGCCTGAAATGTTACGATTTTGCCGCACTTTTTCGTAGATCAAAAAAGCGATGGTTTTCAAACTCTCAGGTCCCCACTTGGNNNNNNNNNNTAGATCATGATCTAGTTCAAACCCGCGTTCATTTTGAAATTATTAAATTTCTTCTGGCCTACAAGTTTGCTGGGGCGCTTTTTCTGACCCCCTAGCTTGAACCCAAGTGGGTCCCAGCTTTTTTTTAAATCGACAATATCCCATTTGATGTAAACTTTGAGCACTTTTTTTTTCAACTTTTCAGTTTTCTTCGGGATTTTTGAATACATTTCACACCCTTTGGAAAAAATATCACTTTGAACCATAATGATAGTTTTCAGAATTGGTAAACATCTTCAAGGTTCAAAGCAGTTTTCATTGTAGAGAATAAATTTTTGATGCCACACCAACTGCAGTCGCTGCTTGCTCATCCGAAAAACTTCATTTGATTTTTATGTCGCAAACATATTACATTGTACACAGAGATCTGGTTAAATTTAATATATATTGAGTATCAAAATCAAAGTAAACAGGTCAGGTTTACAAGTCAATGTTTTTCAACGAAGCTAATTGGAATAGCACGAGAACTGTTGGCAGAGCCTTTTGGGGCTTCGATTTGAAGCTTTCCGTCGTTGGAAATCGCAGATCTGAGAGCAGTCAAATCAACGTCCTCTGGCATCAGGAACATCTTCGAGAAGCATCTTTTCGAATATCCATGCTCAGATTTCATCTCTTGACATCCTTCGATTTTAAGC</canonical>
            <polymorphic>ACTGTCGAATCAAAAACTGGGACCTGGAAAATTTCGCGGGCGGCTTCCGTACCGATTTACGGGGTCTCGCCCAAAAATCACAACAGTAGTACATGAAGTTTATTTCTGTGAATTTAGGGGGATTTTCTGGACCAAATTCTGATTTCTTGGTATGTAAGTGATCACTAGCATCTCTAGAATCTGTTTTTCGGTGAAAAACCGAACTTAATTGCGGAAGTAGCTCGAACGAGGTAAAAGCCTGAAATGTTACGATTTTGCCGCACTTTTTCGTAGATCAAAAAAGCGATGGTTTTCAAACTCTCAGGTCCCCACTTGGNNNNNNNNNNTAGATCATGATCTAGTTCAAACCCGCGTTCATTTTGAAATTATTAAATTTCTTCTGGCCTACAAGTTTGCTGGGGCGCTTTTTCTGACCCCCTAGCTTGAACCCAAGTGGGTCCCAGCTTTTTTTTAAATCGACAATATCCCATTTGATGTAAACTTTGAGCACTTTTTTTTTYAACTTTTCAGTTTTCTTCGGGATTTTTGAATACATTTCACACCCTTTGGAAAAAATATCACTTTGAACCATAATGATAGTTTTCAGAATTGGTAAACATCTTCAAGGTTCAAAGCAGTTTTCATTGTAGAGAATAAATTTTTGATGCCACACCAACTGCAGTCGCTGCTTGCTCATCCGAAAAACTTCATTTGATTTTTATGTCGCAAACATATTACATTGTACACAGAGATCTGGTTAAATTTAATATATATTGAGTATCAAAATCAAAGTAAACAGGTCAGGTTTACAAGTCAATGTTTTTCAACGAAGCTAATTGGAATAGCACGAGAACTGTTGGCAGAGCCTTTTGGGGCTTCGATTTGAAGCTTTCCGTCGTTGGAAATCGCAGATCTGAGAGCAGTCAAATCAACGTCCTCTGGCATCAGGAACATCTTCGAGAAGCATCTTTTCGAATATCCATGCTCAGATTTCATCTCTTGACATCCTTCGATTTTAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAATTCTGATGAAGACCTAGT</pcr_primer_p1>
		<pcr_primer_p2>TCATTATGGTTCAAAGTGATATTT</pcr_primer_p2>
		<pcr_amplicon_size>602</pcr_amplicon_size>
		<canonical_amplicon>TCAACTTTTCAGTTTTCTTCGGGATTTTTGAATACATTTCACACCCTTTGGAAAAAATATCACTTTGAACCATAATGA</canonical_amplicon>
		<polymorphic_amplicon>TYAACTTTTCAGTTTTCTTCGGGATTTTTGAATACATTTCACACCCTTTGGAAAAAATATCACTTTGAACCATAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37055</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>480871</contig_pos>
        <strand>+</strand>
        <context>CAGGTCAGRT[A/G]TACAAGTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTAAATTTAATATATATTGAGTATCAAAATCAAAGTAAACAGGTCAGGT</left_flank>
        <right_flank>TACAAGTCAATGTTTTTCAACGAAGCTAATTGGAATAGCACGAGAACTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTTTTCAAACTCTCAGGTCCCCACTTGGNNNNNNNNNNTAGATCATGATCTAGTTCAAACCCGCGTTCATTTTGAAATTATTAAATTTCTTCTGGCCTACAAGTTTGCTGGGGCGCTTTTTCTGACCCCCTAGCTTGAACCCAAGTGGGTCCCAGCTTTTTTTTAAATCGACAATATCCCATTTGATGTAAACTTTGAGCACTTTTTTTTTCAACTTTTCAGTTTTCTTCGGGATTTTTGAATACATTTCACACCCTTTGGAAAAAATATCACTTTGAACCATAATGATAGTTTTCAGAATTGGTAAACATCTTCAAGGTTCAAAGCAGTTTTCATTGTAGAGAATAAATTTTTGATGCCACACCAACTGCAGTCGCTGCTTGCTCATCCGAAAAACTTCATTTGATTTTTATGTCGCAAACATATTACATTGTACACAGAGATCTGGTTAAATTTAATATATATTGAGTATCAAAATCAAAGTAAACAGGTCAGGTTTACAAGTCAATGTTTTTCAACGAAGCTAATTGGAATAGCACGAGAACTGTTGGCAGAGCCTTTTGGGGCTTCGATTTGAAGCTTTCCGTCGTTGGAAATCGCAGATCTGAGAGCAGTCAAATCAACGTCCTCTGGCATCAGGAACATCTTCGAGAAGCATCTTTTCGAATATCCATGCTCAGATTTCATCTCTTGACATCCTTCGATTTTAAGCTCTCTTCCATCCAATTGAATCTTCATATCTTCTGGTCTGAAATGAGATACATCCAATTGGACAGCATATTTTGAGTCGTCGTTGATGACCTGAAATGAGGAACTTGAATGAAACTTACTATTAGTAATAGTCTTCCACTCACCTCTCCAACAGTATCAGAAAAATTGAAAGAGCTGTGATCTGCATCTCTCCAATAAGGGAGAACAGATCTTCGGGAAAAATCATCAAAAAAGTGATCAGAAGAGCGAGATCTTCCGTAAGGGGTACGATAAACCATCATTGTCGT</canonical>
            <polymorphic>TGGTTTTCAAACTCTCAGGTCCCCACTTGGNNNNNNNNNNTAGATCATGATCTAGTTCAAACCCGCGTTCATTTTGAAATTATTAAATTTCTTCTGGCCTACAAGTTTGCTGGGGCGCTTTTTCTGACCCCCTAGCTTGAACCCAAGTGGGTCCCAGCTTTTTTTTAAATCGACAATATCCCATTTGATGTAAACTTTGAGCACTTTTTTTTTCAACTTTTCAGTTTTCTTCGGGATTTTTGAATACATTTCACACCCTTTGGAAAAAATATCACTTTGAACCATAATGATAGTTTTCAGAATTGGTAAACATCTTCAAGGTTCAAAGCAGTTTTCATTGTAGAGAATAAATTTTTGATGCCACACCAACTGCAGTCGCTGCTTGCTCATCCGAAAAACTTCATTTGATTTTTATGTCGCAAACATATTACATTGTACACAGAGATCTGGTTAAATTTAATATATATTGAGTATCAAAATCAAAGTAAACAGGTCAGGTRTACAAGTCAATGTTTTTCAACGAAGCTAATTGGAATAGCACGAGAACTGTTGGCAGAGCCTTTTGGGGCTTCGATTTGAAGCTTTCCGTCGTTGGAAATCGCAGATCTGAGAGCAGTCAAATCAACGTCCTCTGGCATCAGGAACATCTTCGAGAAGCATCTTTTCGAATATCCATGCTCAGATTTCATCTCTTGACATCCTTCGATTTTAAGCTCTCTTCCATCCAATTGAATCTTCATATCTTCTGGTCTGAAATGAGATACATCCAATTGGACAGCATATTTTGAGTCGTCGTTGATGACCTGAAATGAGGAACTTGAATGAAACTTACTATTAGTAATAGTCTTCCACTCACCTCTCCAACAGTATCAGAAAAATTGAAAGAGCTGTGATCTGCATCTCTCCAATAAGGGAGAACAGATCTTCGGGAAAAATCATCAAAAAAGTGATCAGAAGAGCGAGATCTTCCGTAAGGGGTACGATAAACCATCATTGTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAAACATCTTCAAGGTTCAAAG</pcr_primer_p1>
		<pcr_primer_p2>CCAACAGTTCTCGTGCTATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTAAACATCTTCAAGGTTCAAAGCAGTTTTCATTGTAGAGAATAAATTTTTGATGCCACACCAACTGCAGTCGCTGCTTGCTCATCCGAAAAACTTCATTTGATTTTTATGTCGCAAACATATTACATTGTACACAGAGATCTGGTTAAATTTAATATATATTGAGTATCAAAATCAAAGTAAACAGGTCAGGTTTACAAGTCAATGTTTTTCAACGAAGCTAATTGGAATAGCACGAGAACTGTTGG</canonical_amplicon>
		<polymorphic_amplicon>GTAAACATCTTCAAGGTTCAAAGCAGTTTTCATTGTAGAGAATAAATTTTTGATGCCACACCAACTGCAGTCGCTGCTTGCTCATCCGAAAAACTTCATTTGATTTTTATGTCGCAAACATATTACATTGTACACAGAGATCTGGTTAAATTTAATATATATTGAGTATCAAAATCAAAGTAAACAGGTCAGGTRTACAAGTCAATGTTTTTCAACGAAGCTAATTGGAATAGCACGAGAACTGTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37056</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>492877</contig_pos>
        <strand>+</strand>
        <context>GTAAAYTCAA[A/T]TTTTTTYCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAACTCAA</left_flank>
        <right_flank>TTTTTTTCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAATGGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATACTAACGAATTGTAATTTTCGAATAGCATTGCTTCAATCCGTTTCTGAAATTATTCTGTTTGTAATTAAGGTTGAATTCGAAATTAGGTAAACCTGTTCTGTGCTTGAGAAAGTGAAATTCCCGTCGTCATTGCATTCGAACTTGTCATTGAATGAGCGGAATGGAACTGGAGTTGTCATTTTCGCTAAATTAGGTTTTATTTATTGAGAGAATTGCAATAGAAAACGCTTTGCAATCAGGGAACAGCGGAAAAAATAAATATTCCAAATTGCTAAACAACGCGCGGGCGTCATGAGCGGAGTGTCGTTGTTTCCGTCTGATTTTTTCTTTTTCTTCTGTTGTTGCGAACGTTCTTTCTCATCAAAAATCGTAGTGATTGCAAACTTTTTTTTGCTTTATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAACTCAATTTTTTTTCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAATGGTACATGATTTTTAAAGACTTTTCTCGTCGTATCTCATTTTTTTCTCATTGATTCTCATCAATTGCGATTCCAAAATTTAACGAATTTTAAGGTAATGTCGAAGTTCCCGGTGCCGTTGAGAACGATTGGTGGGCTCCGTCCATCGGCCACCGCCGCCATTTCAGCGGCCAATATCGGTTTCACACAATCGAGCCGCGCCTTGAACACCTCTACGAAGAGCTCCGCTCTCGTTGGACAAGTTGCTCGCCAATACCCAAATGCGGCCGCTTTCAGCATTAAGCAGGTTCGCCTTTACAGCAGCAGTGAGTTACCTAAAATTTTATTCACCGAAACGAACAAAACGCATTTTCAGACAACCTGCCAAAGCACAACCGAGTAGCTCTCCCAGCGCTGTCGCCAACTATGGAACTCGGAACTGTTGTCAGTTGGCAAAAGAAAGAAGGAGATCAGCT</canonical>
            <polymorphic>ATACTAACGAATTGTAATTTTCGAATAGCATTGCTTCAATCCGTTTCTGAAATTATTCTGTTTGTAATTAAGGTTGAATTCGAAATTAGGTAAACCTGTTCTGTGCTTGAGAAAGTGAAATTCCCGTCGTCATTGCATTCGAACTTGTCATTGAATGAGCGGAATGGAACTGGAGTTGTCATTTTCGCTAAATTAGGTTTTATTTATTGAGAGAATTGCAATAGAAAACGCTTTGCAATCAGGGAACAGCGGAAAAAATAAATATTCCAAATTGCTAAACAACGCGCGGGCGTCATGAGCGGAGTGTCGTTGTTTCCGTCTGATTTTTTCTTTTTCTTCTGTTGTTGCGAACGTTCTTTCTCATCAAAAATCGTAGTGATTGCAAACTTTTTTTTGCTTTATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAACTCAAWTTTTTTTCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAATGGTACATGATTTTTAAAGACTTTTCTCGTCGTATCTCATTTTTTTCTCATTGATTCTCATCAATTGCGATTCCAAAATTTAACGAATTTTAAGGTAATGTCGAAGTTCCCGGTGCCGTTGAGAACGATTGGTGGGCTCCGTCCATCGGCCACCGCCGCCATTTCAGCGGCCAATATCGGTTTCACACAATCGAGCCGCGCCTTGAACACCTCTACGAAGAGCTCCGCTCTCGTTGGACAAGTTGCTCGCCAATACCCAAATGCGGCCGCTTTCAGCATTAAGCAGGTTCGCCTTTACAGCAGCAGTGAGTTACCTAAAATTTTATTCACCGAAACGAACAAAACGCATTTTCAGACAACCTGCCAAAGCACAACCGAGTAGCTCTCCCAGCGCTGTCGCCAACTATGGAACTCGGAACTGTTGTCAGTTGGCAAAAGAAAGAAGGAGATCAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>233 160 137 110 72 68 56 35 35 23 15 14 11 9 9 7 6</canonical_bands>
                <polymorphic_bands>233 178 160 137 72 56 35 35 23 15 14 11 9 9 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAGTTTTGATAGTGTGCCTAA</pcr_primer_p1>
		<pcr_primer_p2>CGACATTACCTTAAAATTCGTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAACTCAATTTTTTTTCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAATGGTACATGATTTTTAAAGACTTTTCTCGTCGTATCTCATTTTTTTCTCATTGATTCTCATCAATTGCGATTCCAAAATTTAACGAATTTTAAGGTAATGTCG</canonical_amplicon>
		<polymorphic_amplicon>ATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAACTCAAWTTTTTTTCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAATGGTACATGATTTTTAAAGACTTTTCTCGTCGTATCTCATTTTTTTCTCATTGATTCTCATCAATTGCGATTCCAAAATTTAACGAATTTTAAGGTAATGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37057</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>492884</contig_pos>
        <strand>+</strand>
        <context>CAAWTTTTTT[C/T]CAAATAGGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAACTCAATTTTTTT</left_flank>
        <right_flank>CAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAATGGTACATGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAATTGTAATTTTCGAATAGCATTGCTTCAATCCGTTTCTGAAATTATTCTGTTTGTAATTAAGGTTGAATTCGAAATTAGGTAAACCTGTTCTGTGCTTGAGAAAGTGAAATTCCCGTCGTCATTGCATTCGAACTTGTCATTGAATGAGCGGAATGGAACTGGAGTTGTCATTTTCGCTAAATTAGGTTTTATTTATTGAGAGAATTGCAATAGAAAACGCTTTGCAATCAGGGAACAGCGGAAAAAATAAATATTCCAAATTGCTAAACAACGCGCGGGCGTCATGAGCGGAGTGTCGTTGTTTCCGTCTGATTTTTTCTTTTTCTTCTGTTGTTGCGAACGTTCTTTCTCATCAAAAATCGTAGTGATTGCAAACTTTTTTTTGCTTTATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAACTCAATTTTTTTTCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAATGGTACATGATTTTTAAAGACTTTTCTCGTCGTATCTCATTTTTTTCTCATTGATTCTCATCAATTGCGATTCCAAAATTTAACGAATTTTAAGGTAATGTCGAAGTTCCCGGTGCCGTTGAGAACGATTGGTGGGCTCCGTCCATCGGCCACCGCCGCCATTTCAGCGGCCAATATCGGTTTCACACAATCGAGCCGCGCCTTGAACACCTCTACGAAGAGCTCCGCTCTCGTTGGACAAGTTGCTCGCCAATACCCAAATGCGGCCGCTTTCAGCATTAAGCAGGTTCGCCTTTACAGCAGCAGTGAGTTACCTAAAATTTTATTCACCGAAACGAACAAAACGCATTTTCAGACAACCTGCCAAAGCACAACCGAGTAGCTCTCCCAGCGCTGTCGCCAACTATGGAACTCGGAACTGTTGTCAGTTGGCAAAAGAAAGAAGGAGATCAGCTCAGCGAG</canonical>
            <polymorphic>CGAATTGTAATTTTCGAATAGCATTGCTTCAATCCGTTTCTGAAATTATTCTGTTTGTAATTAAGGTTGAATTCGAAATTAGGTAAACCTGTTCTGTGCTTGAGAAAGTGAAATTCCCGTCGTCATTGCATTCGAACTTGTCATTGAATGAGCGGAATGGAACTGGAGTTGTCATTTTCGCTAAATTAGGTTTTATTTATTGAGAGAATTGCAATAGAAAACGCTTTGCAATCAGGGAACAGCGGAAAAAATAAATATTCCAAATTGCTAAACAACGCGCGGGCGTCATGAGCGGAGTGTCGTTGTTTCCGTCTGATTTTTTCTTTTTCTTCTGTTGTTGCGAACGTTCTTTCTCATCAAAAATCGTAGTGATTGCAAACTTTTTTTTGCTTTATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAACTCAATTTTTTTYCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAATGGTACATGATTTTTAAAGACTTTTCTCGTCGTATCTCATTTTTTTCTCATTGATTCTCATCAATTGCGATTCCAAAATTTAACGAATTTTAAGGTAATGTCGAAGTTCCCGGTGCCGTTGAGAACGATTGGTGGGCTCCGTCCATCGGCCACCGCCGCCATTTCAGCGGCCAATATCGGTTTCACACAATCGAGCCGCGCCTTGAACACCTCTACGAAGAGCTCCGCTCTCGTTGGACAAGTTGCTCGCCAATACCCAAATGCGGCCGCTTTCAGCATTAAGCAGGTTCGCCTTTACAGCAGCAGTGAGTTACCTAAAATTTTATTCACCGAAACGAACAAAACGCATTTTCAGACAACCTGCCAAAGCACAACCGAGTAGCTCTCCCAGCGCTGTCGCCAACTATGGAACTCGGAACTGTTGTCAGTTGGCAAAAGAAAGAAGGAGATCAGCTCAGCGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAGTTTTGATAGTGTGCCTAA</pcr_primer_p1>
		<pcr_primer_p2>CGACATTACCTTAAAATTCGTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAACTCAATTTTTTTTCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAATGGTACATGATTTTTAAAGACTTTTCTCGTCGTATCTCATTTTTTTCTCATTGATTCTCATCAATTGCGATTCCAAAATTTAACGAATTTTAAGGTAATGTCG</canonical_amplicon>
		<polymorphic_amplicon>ATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAACTCAATTTTTTTYCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAATGGTACATGATTTTTAAAGACTTTTCTCGTCGTATCTCATTTTTTTCTCATTGATTCTCATCAATTGCGATTCCAAAATTTAACGAATTTTAAGGTAATGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37058</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>492951</contig_pos>
        <strand>+</strand>
        <context>GACTTTTCTC[A/G]TCGTATCTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCCGCAGTTATTTTTTTCAAATGGTACATGATTTTTAAAGACTTTTCTC</left_flank>
        <right_flank>TCGTATCTCATTTTTTTCTCATTGATTCTCATCAATTGCGATTCCAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAATTCGAAATTAGGTAAACCTGTTCTGTGCTTGAGAAAGTGAAATTCCCGTCGTCATTGCATTCGAACTTGTCATTGAATGAGCGGAATGGAACTGGAGTTGTCATTTTCGCTAAATTAGGTTTTATTTATTGAGAGAATTGCAATAGAAAACGCTTTGCAATCAGGGAACAGCGGAAAAAATAAATATTCCAAATTGCTAAACAACGCGCGGGCGTCATGAGCGGAGTGTCGTTGTTTCCGTCTGATTTTTTCTTTTTCTTCTGTTGTTGCGAACGTTCTTTCTCATCAAAAATCGTAGTGATTGCAAACTTTTTTTTGCTTTATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAACTCAATTTTTTTTCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAATGGTACATGATTTTTAAAGACTTTTCTCGTCGTATCTCATTTTTTTCTCATTGATTCTCATCAATTGCGATTCCAAAATTTAACGAATTTTAAGGTAATGTCGAAGTTCCCGGTGCCGTTGAGAACGATTGGTGGGCTCCGTCCATCGGCCACCGCCGCCATTTCAGCGGCCAATATCGGTTTCACACAATCGAGCCGCGCCTTGAACACCTCTACGAAGAGCTCCGCTCTCGTTGGACAAGTTGCTCGCCAATACCCAAATGCGGCCGCTTTCAGCATTAAGCAGGTTCGCCTTTACAGCAGCAGTGAGTTACCTAAAATTTTATTCACCGAAACGAACAAAACGCATTTTCAGACAACCTGCCAAAGCACAACCGAGTAGCTCTCCCAGCGCTGTCGCCAACTATGGAACTCGGAACTGTTGTCAGTTGGCAAAAGAAAGAAGGAGATCAGCTCAGCGAGGGAGATTTGCTCTGCGAAATTGAAACCGACAAGGCCACTATGGGATTCGAAACTCCAGAAGAGGGAT</canonical>
            <polymorphic>TGAATTCGAAATTAGGTAAACCTGTTCTGTGCTTGAGAAAGTGAAATTCCCGTCGTCATTGCATTCGAACTTGTCATTGAATGAGCGGAATGGAACTGGAGTTGTCATTTTCGCTAAATTAGGTTTTATTTATTGAGAGAATTGCAATAGAAAACGCTTTGCAATCAGGGAACAGCGGAAAAAATAAATATTCCAAATTGCTAAACAACGCGCGGGCGTCATGAGCGGAGTGTCGTTGTTTCCGTCTGATTTTTTCTTTTTCTTCTGTTGTTGCGAACGTTCTTTCTCATCAAAAATCGTAGTGATTGCAAACTTTTTTTTGCTTTATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAACTCAATTTTTTTTCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAATGGTACATGATTTTTAAAGACTTTTCTCRTCGTATCTCATTTTTTTCTCATTGATTCTCATCAATTGCGATTCCAAAATTTAACGAATTTTAAGGTAATGTCGAAGTTCCCGGTGCCGTTGAGAACGATTGGTGGGCTCCGTCCATCGGCCACCGCCGCCATTTCAGCGGCCAATATCGGTTTCACACAATCGAGCCGCGCCTTGAACACCTCTACGAAGAGCTCCGCTCTCGTTGGACAAGTTGCTCGCCAATACCCAAATGCGGCCGCTTTCAGCATTAAGCAGGTTCGCCTTTACAGCAGCAGTGAGTTACCTAAAATTTTATTCACCGAAACGAACAAAACGCATTTTCAGACAACCTGCCAAAGCACAACCGAGTAGCTCTCCCAGCGCTGTCGCCAACTATGGAACTCGGAACTGTTGTCAGTTGGCAAAAGAAAGAAGGAGATCAGCTCAGCGAGGGAGATTTGCTCTGCGAAATTGAAACCGACAAGGCCACTATGGGATTCGAAACTCCAGAAGAGGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>497 448 55</canonical_bands>
                <polymorphic_bands>945 55</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAGTTTTGATAGTGTGCCTAA</pcr_primer_p1>
		<pcr_primer_p2>CGACATTACCTTAAAATTCGTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAACTCAATTTTTTTTCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAATGGTACATGATTTTTAAAGACTTTTCTCGTCGTATCTCATTTTTTTCTCATTGATTCTCATCAATTGCGATTCCAAAATTTAACGAATTTTAAGGTAATGTCG</canonical_amplicon>
		<polymorphic_amplicon>ATCAGTTTTGATAGTGTGCCTAATCAGTAAATTGCACCAGAAACTCGAAGAAAATCATTCGAGTAGGCTGAAATGTTTCCATTTTTCGGGTAAACTCAATTTTTTTTCAAATAGGTGATTGTTGCCCGCAGTTATTTTTTTCAAATGGTACATGATTTTTAAAGACTTTTCTCRTCGTATCTCATTTTTTTCTCATTGATTCTCATCAATTGCGATTCCAAAATTTAACGAATTTTAAGGTAATGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37059</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>496116</contig_pos>
        <strand>+</strand>
        <context>TTGGGAATTC[C/T]GTTCCGAACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGATGTCCGGAATTTTTCAATTTTTACCACTTCGGAATTTTGGGAATTC</left_flank>
        <right_flank>GTTCCGAACATTCCTGCGCCGACCGAATTTACGCAAAAAATTCAACAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCGCTGGAATTGGCCGGAAAGTCTGTTGGAACGCCGGTCTGAAATATAGAGATCATAAATACCGAATCGATTCGAAAAACGAACTGTTGAGTGAATGGAGCAGGTGTTACTGGTGGAGTCGTCACTTGAGCATCTCCAGAATTTGCACGTTGGAAGCCATCTGAATGAGCAAAACTAGAAAAACTATGAACCAAAAAGGGCAACAAATCTACCAAGAACTTATTCTCTCACTGAAACTAATGCACACATTCTAATGAAGAACAAAAGATCTTCAACTGAAAATTCTCTATAACTCGTGTTCCATTCGGTCGGGAAATTGATCCGACCGCCGACTCTGGGATGTTCGGAATGGCGTTCTCGGAATGTCGAAAACTTCGATTTTCGGAATTTCGGAACTTTCCTTTTTTGAATTCCATAATTTTCGGAATTTTCCGCTTTTTAAAATTTTTAGATGTCCGGAATTTTTCAATTTTTACCACTTCGGAATTTTGGGAATTCCGTTCCGAACATTCCTGCGCCGACCGAATTTACGCAAAAAATTCAACAAGTAAATGCAAAAATTCGAACGGTTTGGTCGGTCGGCGGTCGCTCATGTTCGACCGACCGAAATGAAATCCTCTAAATCCTACATTCTTACACATACGTCTATGCATGATTTCCATACCTGCCACTGGAATAATTCTCGACATATGTGGTGTCGTGGAGGAGACTGGCTGTGGTGGCTGAACATTTGCAAAACGGTTAAAGTGTTCTTCGTAAAACAAATAAAAAGTGCAAAGCTAGAATATTGCTGAAAGTGTGTGTGGCTCTGAAAAGAGAGAAAACCGTGCAGAGGAAAACAACTCTTGACCTGTTGCTGAGCCGACTGGAACTGGGGTTGTTGTGGAAGAGATTGTTCGAGGGCTTGGGCTCCCTGAATTTTTTATAATTTTTGAATAAGTTTTTTAGATTTTGTATCATTGAAAGCAGTGTGAGAGCGAACCAAGCAACTATTCTATT</canonical>
            <polymorphic>ACCGCTGGAATTGGCCGGAAAGTCTGTTGGAACGCCGGTCTGAAATATAGAGATCATAAATACCGAATCGATTCGAAAAACGAACTGTTGAGTGAATGGAGCAGGTGTTACTGGTGGAGTCGTCACTTGAGCATCTCCAGAATTTGCACGTTGGAAGCCATCTGAATGAGCAAAACTAGAAAAACTATGAACCAAAAAGGGCAACAAATCTACCAAGAACTTATTCTCTCACTGAAACTAATGCACACATTCTAATGAAGAACAAAAGATCTTCAACTGAAAATTCTCTATAACTCGTGTTCCATTCGGTCGGGAAATTGATCCGACCGCCGACTCTGGGATGTTCGGAATGGCGTTCTCGGAATGTCGAAAACTTCGATTTTCGGAATTTCGGAACTTTCCTTTTTTGAATTCCATAATTTTCGGAATTTTCCGCTTTTTAAAATTTTTAGATGTCCGGAATTTTTCAATTTTTACCACTTCGGAATTTTGGGAATTCYGTTCCGAACATTCCTGCGCCGACCGAATTTACGCAAAAAATTCAACAAGTAAATGCAAAAATTCGAACGGTTTGGTCGGTCGGCGGTCGCTCATGTTCGACCGACCGAAATGAAATCCTCTAAATCCTACATTCTTACACATACGTCTATGCATGATTTCCATACCTGCCACTGGAATAATTCTCGACATATGTGGTGTCGTGGAGGAGACTGGCTGTGGTGGCTGAACATTTGCAAAACGGTTAAAGTGTTCTTCGTAAAACAAATAAAAAGTGCAAAGCTAGAATATTGCTGAAAGTGTGTGTGGCTCTGAAAAGAGAGAAAACCGTGCAGAGGAAAACAACTCTTGACCTGTTGCTGAGCCGACTGGAACTGGGGTTGTTGTGGAAGAGATTGTTCGAGGGCTTGGGCTCCCTGAATTTTTTATAATTTTTGAATAAGTTTTTTAGATTTTGTATCATTGAAAGCAGTGTGAGAGCGAACCAAGCAACTATTCTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCTATAACTCGTGTTCCATTC</pcr_primer_p1>
		<pcr_primer_p2>TTGCATTTACTTGTTGAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>TCTCTATAACTCGTGTTCCATTCGGTCGGGAAATTGATCCGACCGCCGACTCTGGGATGTTCGGAATGGCGTTCTCGGAATGTCGAAAACTTCGATTTTCGGAATTTCGGAACTTTCCTTTTTTGAATTCCATAATTTTCGGAATTTTCCGCTTTTTAAAATTTTTAGATGTCCGGAATTTTTCAATTTTTACCACTTCGGAATTTTGGGAATTCCGTTCCGAACATTCCTGCGCCGACCGAATTTACGCAAAAAATTCAACAAGTAAATGCAA</canonical_amplicon>
		<polymorphic_amplicon>TCTCTATAACTCGTGTTCCATTCGGTCGGGAAATTGATCCGACCGCCGACTCTGGGATGTTCGGAATGGCGTTCTCGGAATGTCGAAAACTTCGATTTTCGGAATTTCGGAACTTTCCTTTTTTGAATTCCATAATTTTCGGAATTTTCCGCTTTTTAAAATTTTTAGATGTCCGGAATTTTTCAATTTTTACCACTTCGGAATTTTGGGAATTCYGTTCCGAACATTCCTGCGCCGACCGAATTTACGCAAAAAATTCAACAAGTAAATGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37060</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>571580</contig_pos>
        <strand>+</strand>
        <context>TTTTACAAAC[C/T]TGATAttacc</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTCAATTTCCGAAATCGTCTAGTTTTACAAATTTGATATTTTACAAAC</left_flank>
        <right_flank>TGATATTACCTCGGTTCTTTTAGACGATATCAAAAAATAATCTACATAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCGTTAGAGAAGAATATGTGGGTGTAAATTGGAGAAGCTGCTCGTTTGAAATATGAATCCTTGTATGAAGCGACACAAGGGAGACAAGAGGATGGTCCAAATTAATTGGATGATGATTTCCGTTTGACTTTTTTCTCTTTTCGAAGGGTTTGTCGTAAAAGAAACAATGACGAATATTCGGGAAGAATGAAGAAGATCCTCCTGAAAACGACCCAGACAAAGTGCACTCAATGGATCTCAGATTACCTCTTCTCTTCGGACTTTTGCCTTTTCATTCAAAACATTTCGACTGCTGAATTTTTCAGCAGCACTGCTTGGGCTCTTTGTCAACGGATTGTGCATAGTTGCGATAGAGTCGGATTACGGTAGAGAGATGATTTTCTTGTTGAAACATTTTTTGGTTTTTTAGGATGGGGAAGTTTTAAAAATGCTCTAAAATTGGAGGAAAGTTTCAATTTCCGAAATCGTCTAGTTTTACAAATTTGATATTTTACAAACTTGATATTACCTCGGTTCTTTTAGACGATATCAAAAAATAATCTACATAAAATGTTTCTGATGTTATGATAAACACTGTATCAGTTGACCAAATTTTGAAATATCTTGAAGAAAATGATAATTGCGCTCAAAATGCACGTATAGGATGGGCTTCTATTAGTGCAATTACAGTAAGATAGAAAACAAATTTGAAAAAGTGTCATTTAAAAATCGGCTCTGAAAATAAATTCTGAAACTTCCGTACATTTCAAAACTTTTCATTTCCTTTTCTGCGCTCTTCTGCCAATTTTCCATTTTTAATCCACAAAAAATACTGTGAAAAATGAAACCTCATCCTTAATACAATTAACTCTTACCGTGTGCCACAATTGATGATAATCATGTTCTCTGGTTTCCGCCCATCTGCTGTCATTCATTTTTTCCAACAATTGATTCGTTACACAAGTGATTCTATTCTATCGTTTTTTTTCTTCTGGGGATGTCGGTGCGAAAAATTGGGTT</canonical>
            <polymorphic>GGCGTTAGAGAAGAATATGTGGGTGTAAATTGGAGAAGCTGCTCGTTTGAAATATGAATCCTTGTATGAAGCGACACAAGGGAGACAAGAGGATGGTCCAAATTAATTGGATGATGATTTCCGTTTGACTTTTTTCTCTTTTCGAAGGGTTTGTCGTAAAAGAAACAATGACGAATATTCGGGAAGAATGAAGAAGATCCTCCTGAAAACGACCCAGACAAAGTGCACTCAATGGATCTCAGATTACCTCTTCTCTTCGGACTTTTGCCTTTTCATTCAAAACATTTCGACTGCTGAATTTTTCAGCAGCACTGCTTGGGCTCTTTGTCAACGGATTGTGCATAGTTGCGATAGAGTCGGATTACGGTAGAGAGATGATTTTCTTGTTGAAACATTTTTTGGTTTTTTAGGATGGGGAAGTTTTAAAAATGCTCTAAAATTGGAGGAAAGTTTCAATTTCCGAAATCGTCTAGTTTTACAAATTTGATATTTTACAAACYTGATATTACCTCGGTTCTTTTAGACGATATCAAAAAATAATCTACATAAAATGTTTCTGATGTTATGATAAACACTGTATCAGTTGACCAAATTTTGAAATATCTTGAAGAAAATGATAATTGCGCTCAAAATGCACGTATAGGATGGGCTTCTATTAGTGCAATTACAGTAAGATAGAAAACAAATTTGAAAAAGTGTCATTTAAAAATCGGCTCTGAAAATAAATTCTGAAACTTCCGTACATTTCAAAACTTTTCATTTCCTTTTCTGCGCTCTTCTGCCAATTTTCCATTTTTAATCCACAAAAAATACTGTGAAAAATGAAACCTCATCCTTAATACAATTAACTCTTACCGTGTGCCACAATTGATGATAATCATGTTCTCTGGTTTCCGCCCATCTGCTGTCATTCATTTTTTCCAACAATTGATTCGTTACACAAGTGATTCTATTCTATCGTTTTTTTTCTTCTGGGGATGTCGGTGCGAAAAATTGGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAATTGGAGGAAAGTTTCAAT</pcr_primer_p1>
		<pcr_primer_p2>TTATTTTCAGAGCCGATTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>TAAAATTGGAGGAAAGTTTCAATTTCCGAAATCGTCTAGTTTTACAAATTTGATATTTTACAAACTTGATATTACCTCGGTTCTTTTAGACGATATCAAAAAATAATCTACATAAAATGTTTCTGATGTTATGATAAACACTGTATCAGTTGACCAAATTTTGAAATATCTTGAAGAAAATGATAATTGCGCTCAAAATGCACGTATAGGATGGGCTTCTATTAGTGCAATTACAGTAAGATAGAAAACAAATTTGAAAAAGTGTCATTTAAAAATCGGCTCTGAAAATAA</canonical_amplicon>
		<polymorphic_amplicon>TAAAATTGGAGGAAAGTTTCAATTTCCGAAATCGTCTAGTTTTACAAATTTGATATTTTACAAACYTGATATTACCTCGGTTCTTTTAGACGATATCAAAAAATAATCTACATAAAATGTTTCTGATGTTATGATAAACACTGTATCAGTTGACCAAATTTTGAAATATCTTGAAGAAAATGATAATTGCGCTCAAAATGCACGTATAGGATGGGCTTCTATTAGTGCAATTACAGTAAGATAGAAAACAAATTTGAAAAAGTGTCATTTAAAAATCGGCTCTGAAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37061</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>571633</contig_pos>
        <strand></strand>
        <context>tacataaaat[G/C]tttctgatgt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>ATATTACCTCGGTTCTTTTAGACGATATCAAAAAATAATCTACATAAAAT</left_flank>
        <right_flank>TTTCTGATGTTATGATAAACACTGTATCAGTTGACCAAATTTTGAAATAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAATCCTTGTATGAAGCGACACAAGGGAGACAAGAGGATGGTCCAAATTAATTGGATGATGATTTCCGTTTGACTTTTTTCTCTTTTCGAAGGGTTTGTCGTAAAAGAAACAATGACGAATATTCGGGAAGAATGAAGAAGATCCTCCTGAAAACGACCCAGACAAAGTGCACTCAATGGATCTCAGATTACCTCTTCTCTTCGGACTTTTGCCTTTTCATTCAAAACATTTCGACTGCTGAATTTTTCAGCAGCACTGCTTGGGCTCTTTGTCAACGGATTGTGCATAGTTGCGATAGAGTCGGATTACGGTAGAGAGATGATTTTCTTGTTGAAACATTTTTTGGTTTTTTAGGATGGGGAAGTTTTAAAAATGCTCTAAAATTGGAGGAAAGTTTCAATTTCCGAAATCGTCTAGTTTTACAAATTTGATATTTTACAAACTTGATATTACCTCGGTTCTTTTAGACGATATCAAAAAATAATCTACATAAAATGTTTCTGATGTTATGATAAACACTGTATCAGTTGACCAAATTTTGAAATATCTTGAAGAAAATGATAATTGCGCTCAAAATGCACGTATAGGATGGGCTTCTATTAGTGCAATTACAGTAAGATAGAAAACAAATTTGAAAAAGTGTCATTTAAAAATCGGCTCTGAAAATAAATTCTGAAACTTCCGTACATTTCAAAACTTTTCATTTCCTTTTCTGCGCTCTTCTGCCAATTTTCCATTTTTAATCCACAAAAAATACTGTGAAAAATGAAACCTCATCCTTAATACAATTAACTCTTACCGTGTGCCACAATTGATGATAATCATGTTCTCTGGTTTCCGCCCATCTGCTGTCATTCATTTTTTCCAACAATTGATTCGTTACACAAGTGATTCTATTCTATCGTTTTTTTTCTTCTGGGGATGTCGGTGCGAAAAATTGGGTTCTCTGACGAGGTGTACGGTAAGTTAAGTTATTTTGAAATTGCTACTTAACTCC</canonical>
            <polymorphic>ATGAATCCTTGTATGAAGCGACACAAGGGAGACAAGAGGATGGTCCAAATTAATTGGATGATGATTTCCGTTTGACTTTTTTCTCTTTTCGAAGGGTTTGTCGTAAAAGAAACAATGACGAATATTCGGGAAGAATGAAGAAGATCCTCCTGAAAACGACCCAGACAAAGTGCACTCAATGGATCTCAGATTACCTCTTCTCTTCGGACTTTTGCCTTTTCATTCAAAACATTTCGACTGCTGAATTTTTCAGCAGCACTGCTTGGGCTCTTTGTCAACGGATTGTGCATAGTTGCGATAGAGTCGGATTACGGTAGAGAGATGATTTTCTTGTTGAAACATTTTTTGGTTTTTTAGGATGGGGAAGTTTTAAAAATGCTCTAAAATTGGAGGAAAGTTTCAATTTCCGAAATCGTCTAGTTTTACAAATTTGATATTTTACAAACTTGATATTACCTCGGTTCTTTTAGACGATATCAAAAAATAATCTACATAAAATSTTTCTGATGTTATGATAAACACTGTATCAGTTGACCAAATTTTGAAATATCTTGAAGAAAATGATAATTGCGCTCAAAATGCACGTATAGGATGGGCTTCTATTAGTGCAATTACAGTAAGATAGAAAACAAATTTGAAAAAGTGTCATTTAAAAATCGGCTCTGAAAATAAATTCTGAAACTTCCGTACATTTCAAAACTTTTCATTTCCTTTTCTGCGCTCTTCTGCCAATTTTCCATTTTTAATCCACAAAAAATACTGTGAAAAATGAAACCTCATCCTTAATACAATTAACTCTTACCGTGTGCCACAATTGATGATAATCATGTTCTCTGGTTTCCGCCCATCTGCTGTCATTCATTTTTTCCAACAATTGATTCGTTACACAAGTGATTCTATTCTATCGTTTTTTTTCTTCTGGGGATGTCGGTGCGAAAAATTGGGTTCTCTGACGAGGTGTACGGTAAGTTAAGTTATTTTGAAATTGCTACTTAACTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAATTGGAGGAAAGTTTCAAT</pcr_primer_p1>
		<pcr_primer_p2>TTATTTTCAGAGCCGATTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>291</pcr_amplicon_size>
		<canonical_amplicon>TAAAATTGGAGGAAAGTTTCAATTTCCGAAATCGTCTAGTTTTACAAATTTGATATTTTACAAACTTGATATTACCTCGGTTCTTTTAGACGATATCAAAAAATAATCTACATAAAATGTTTCTGATGTTATGATAAACACTGTATCAGTTGACCAAATTTTGAAATATCTTGAAGAAAATGATAATTGCGCTCAAAATGCACGTATAGGATGGGCTTCTATTAGTGCAATTACAGTAAGATAGAAAACAAATTTGAAAAAGTGTCATTTAAAAATCGGCTCTGAAAATAA</canonical_amplicon>
		<polymorphic_amplicon>TAAAATTGGAGGAAAGTTTCAATTTCCGAAATCGTCTAGTTTTACAAATTTGATATTTTACAAACTTGATATTACCTCGGTTCTTTTAGACGATATCAAAAAATAATCTACATAAAATSTTTCTGATGTTATGATAAACACTGTATCAGTTGACCAAATTTTGAAATATCTTGAAGAAAATGATAATTGCGCTCAAAATGCACGTATAGGATGGGCTTCTATTAGTGCAATTACAGTAAGATAGAAAACAAATTTGAAAAAGTGTCATTTAAAAATCGGCTCTGAAAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37062</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>571761</contig_pos>
        <strand>+</strand>
        <context>TAAGATAGAA[A/C]ACAAATTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATGCACGTATAGGATGGGCTTCTATTAGTGCAATTACAGTAAGATAGAA</left_flank>
        <right_flank>ACAAATTTGAAAAAGTGTCATTTAAAAATCGGCTCTGAAAATAAATTCTG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAGAATGAAGAAGATCCTCCTGAAAACGACCCAGACAAAGTGCACTCAATGGATCTCAGATTACCTCTTCTCTTCGGACTTTTGCCTTTTCATTCAAAACATTTCGACTGCTGAATTTTTCAGCAGCACTGCTTGGGCTCTTTGTCAACGGATTGTGCATAGTTGCGATAGAGTCGGATTACGGTAGAGAGATGATTTTCTTGTTGAAACATTTTTTGGTTTTTTAGGATGGGGAAGTTTTAAAAATGCTCTAAAATTGGAGGAAAGTTTCAATTTCCGAAATCGTCTAGTTTTACAAATTTGATATTTTACAAACTTGATATTACCTCGGTTCTTTTAGACGATATCAAAAAATAATCTACATAAAATGTTTCTGATGTTATGATAAACACTGTATCAGTTGACCAAATTTTGAAATATCTTGAAGAAAATGATAATTGCGCTCAAAATGCACGTATAGGATGGGCTTCTATTAGTGCAATTACAGTAAGATAGAAAACAAATTTGAAAAAGTGTCATTTAAAAATCGGCTCTGAAAATAAATTCTGAAACTTCCGTACATTTCAAAACTTTTCATTTCCTTTTCTGCGCTCTTCTGCCAATTTTCCATTTTTAATCCACAAAAAATACTGTGAAAAATGAAACCTCATCCTTAATACAATTAACTCTTACCGTGTGCCACAATTGATGATAATCATGTTCTCTGGTTTCCGCCCATCTGCTGTCATTCATTTTTTCCAACAATTGATTCGTTACACAAGTGATTCTATTCTATCGTTTTTTTTCTTCTGGGGATGTCGGTGCGAAAAATTGGGTTCTCTGACGAGGTGTACGGTAAGTTAAGTTATTTTGAAATTGCTACTTAACTCCTCCAAAAAATGTAGGTATTTTATATCCGGCTCAATTCTGCTGTCTACGCAACATGCACTACTTGACACCCTGAGTACCGTAAACTATACCCTAAACCCACACAATGAGTCATATGTGTCAAATCTAGT</canonical>
            <polymorphic>GGAAGAATGAAGAAGATCCTCCTGAAAACGACCCAGACAAAGTGCACTCAATGGATCTCAGATTACCTCTTCTCTTCGGACTTTTGCCTTTTCATTCAAAACATTTCGACTGCTGAATTTTTCAGCAGCACTGCTTGGGCTCTTTGTCAACGGATTGTGCATAGTTGCGATAGAGTCGGATTACGGTAGAGAGATGATTTTCTTGTTGAAACATTTTTTGGTTTTTTAGGATGGGGAAGTTTTAAAAATGCTCTAAAATTGGAGGAAAGTTTCAATTTCCGAAATCGTCTAGTTTTACAAATTTGATATTTTACAAACTTGATATTACCTCGGTTCTTTTAGACGATATCAAAAAATAATCTACATAAAATGTTTCTGATGTTATGATAAACACTGTATCAGTTGACCAAATTTTGAAATATCTTGAAGAAAATGATAATTGCGCTCAAAATGCACGTATAGGATGGGCTTCTATTAGTGCAATTACAGTAAGATAGAAMACAAATTTGAAAAAGTGTCATTTAAAAATCGGCTCTGAAAATAAATTCTGAAACTTCCGTACATTTCAAAACTTTTCATTTCCTTTTCTGCGCTCTTCTGCCAATTTTCCATTTTTAATCCACAAAAAATACTGTGAAAAATGAAACCTCATCCTTAATACAATTAACTCTTACCGTGTGCCACAATTGATGATAATCATGTTCTCTGGTTTCCGCCCATCTGCTGTCATTCATTTTTTCCAACAATTGATTCGTTACACAAGTGATTCTATTCTATCGTTTTTTTTCTTCTGGGGATGTCGGTGCGAAAAATTGGGTTCTCTGACGAGGTGTACGGTAAGTTAAGTTATTTTGAAATTGCTACTTAACTCCTCCAAAAAATGTAGGTATTTTATATCCGGCTCAATTCTGCTGTCTACGCAACATGCACTACTTGACACCCTGAGTACCGTAAACTATACCCTAAACCCACACAATGAGTCATATGTGTCAAATCTAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAATTGGAGGAAAGTTTCAAT</pcr_primer_p1>
		<pcr_primer_p2>GTTTCAGAATTTATTTTCAGAGC</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>TAAAATTGGAGGAAAGTTTCAATTTCCGAAATCGTCTAGTTTTACAAATTTGATATTTTACAAACTTGATATTACCTCGGTTCTTTTAGACGATATCAAAAAATAATCTACATAAAATGTTTCTGATGTTATGATAAACACTGTATCAGTTGACCAAATTTTGAAATATCTTGAAGAAAATGATAATTGCGCTCAAAATGCACGTATAGGATGGGCTTCTATTAGTGCAATTACAGTAAGATAGAAAACAAATTTGAAAAAGTGTCATTTAAAAATCGGCTCTGAAAATAAATTCTGAAAC</canonical_amplicon>
		<polymorphic_amplicon>TAAAATTGGAGGAAAGTTTCAATTTCCGAAATCGTCTAGTTTTACAAATTTGATATTTTACAAACTTGATATTACCTCGGTTCTTTTAGACGATATCAAAAAATAATCTACATAAAATGTTTCTGATGTTATGATAAACACTGTATCAGTTGACCAAATTTTGAAATATCTTGAAGAAAATGATAATTGCGCTCAAAATGCACGTATAGGATGGGCTTCTATTAGTGCAATTACAGTAAGATAGAAMACAAATTTGAAAAAGTGTCATTTAAAAATCGGCTCTGAAAATAAATTCTGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37063</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>574184</contig_pos>
        <strand>+</strand>
        <context>TTTTATCTCT[C/T]TGCTATTATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCAAACGCAACTCTGTGCGCAAAACACGAATAATCCCTTTTTTATCTCT</left_flank>
        <right_flank>TGCTATTATCAGCAGCACAGATTAGCACCGGAAAAATGTCTACACATGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGGAAGAACAAGAGAGATAGGGAGAGACGAAGATTTATGAGCCCAGTACGTTTTTGAGAAAGTGAAAATGTACGCTTTGAATGAAATATTGGAAATGTGTTGGAAATTGAAAGACAGATAATGGTTTTTTTTTAATTCTTGACGAAATGGATGGATGGATGAGTTGGGAAACTGGTCTTGGTTTCAGCTCAACTATCTCGGTTCATTCGGAAGGTATCAAAAAGTGGTCAACTAATAAATTATTAATCATGATATCACAAACATTTTATTAGTTAAAATTTTTTGATACCTCTTACAGGAACCGAGACAAATGAGCTCCCTTGTATTACTGGTTTAACATTTCTTATTTCTTGTGGTTCCTGAAATGAAGGCATTTTTAGATTTATACTCTTTCTTCAAATATTTTTCTAGAACTTTCCAGATCCTGACCCCCTCTTCCGTCTCAAAATCCAAACGCAACTCTGTGCGCAAAACACGAATAATCCCTTTTTTATCTCTCTGCTATTATCAGCAGCACAGATTAGCACCGGAAAAATGTCTACACATGTCTAGAGGATTTGTTTCTGAATGAACTTTTCAGAGATTAAACTCAGTCTGAAACTCGCGAAATCAAAAGTTTTAAGTGATAGTGGCTGAAAACACTTTTTACAGGAGGAAATTGAGTCACAAAAAAGAGAGGACTTCCGGTTTGAAATCGAAACCTGTCAGTTTTGATAATGTCAATCTGATAGGTTGATAATTGATACAGAGACATTTGGGTTTTATGGGTTGAAAGTTTGAAAAAGAAAATTGGGAAGGCAGAAATTGTGAAATTTGTATTTTGTAAAATTGTTATAGCACCGTACTTCCTTGAATAGAAGCACAAACAAACTGTCAACTTTGAGCTCAATTATCTCAATTCCTATGAAAGGTATCAAAAAGTTGTCGACTGGCAAATTATTTATCATTATATCACCAATATTTTATAAGTTAGCACAATTTTTATACCTTTTACAGAAG</canonical>
            <polymorphic>ACGGAAGAACAAGAGAGATAGGGAGAGACGAAGATTTATGAGCCCAGTACGTTTTTGAGAAAGTGAAAATGTACGCTTTGAATGAAATATTGGAAATGTGTTGGAAATTGAAAGACAGATAATGGTTTTTTTTTAATTCTTGACGAAATGGATGGATGGATGAGTTGGGAAACTGGTCTTGGTTTCAGCTCAACTATCTCGGTTCATTCGGAAGGTATCAAAAAGTGGTCAACTAATAAATTATTAATCATGATATCACAAACATTTTATTAGTTAAAATTTTTTGATACCTCTTACAGGAACCGAGACAAATGAGCTCCCTTGTATTACTGGTTTAACATTTCTTATTTCTTGTGGTTCCTGAAATGAAGGCATTTTTAGATTTATACTCTTTCTTCAAATATTTTTCTAGAACTTTCCAGATCCTGACCCCCTCTTCCGTCTCAAAATCCAAACGCAACTCTGTGCGCAAAACACGAATAATCCCTTTTTTATCTCTYTGCTATTATCAGCAGCACAGATTAGCACCGGAAAAATGTCTACACATGTCTAGAGGATTTGTTTCTGAATGAACTTTTCAGAGATTAAACTCAGTCTGAAACTCGCGAAATCAAAAGTTTTAAGTGATAGTGGCTGAAAACACTTTTTACAGGAGGAAATTGAGTCACAAAAAAGAGAGGACTTCCGGTTTGAAATCGAAACCTGTCAGTTTTGATAATGTCAATCTGATAGGTTGATAATTGATACAGAGACATTTGGGTTTTATGGGTTGAAAGTTTGAAAAAGAAAATTGGGAAGGCAGAAATTGTGAAATTTGTATTTTGTAAAATTGTTATAGCACCGTACTTCCTTGAATAGAAGCACAAACAAACTGTCAACTTTGAGCTCAATTATCTCAATTCCTATGAAAGGTATCAAAAAGTTGTCGACTGGCAAATTATTTATCATTATATCACCAATATTTTATAAGTTAGCACAATTTTTATACCTTTTACAGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTAGAACTTTCCAGATCCT</pcr_primer_p1>
		<pcr_primer_p2>GTAAAAAGTGTTTTCAGCCACTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTAGAACTTTCCAGATCCTGACCCCCTCTTCCGTCTCAAAATCCAAACGCAACTCTGTGCGCAAAACACGAATAATCCCTTTTTTATCTCTCTGCTATTATCAGCAGCACAGATTAGCACCGGAAAAATGTCTACACATGTCTAGAGGATTTGTTTCTGAATGAACTTTTCAGAGATTAAACTCAGTCTGAAACTCGCGAAATCAAAAGTTTTAAGTGATAGTGGCTGAAAACACTTTTTAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTAGAACTTTCCAGATCCTGACCCCCTCTTCCGTCTCAAAATCCAAACGCAACTCTGTGCGCAAAACACGAATAATCCCTTTTTTATCTCTYTGCTATTATCAGCAGCACAGATTAGCACCGGAAAAATGTCTACACATGTCTAGAGGATTTGTTTCTGAATGAACTTTTCAGAGATTAAACTCAGTCTGAAACTCGCGAAATCAAAAGTTTTAAGTGATAGTGGCTGAAAACACTTTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37064</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>574620</contig_pos>
        <strand></strand>
        <context>tcgactggca[A/T]attatttatc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCAATTATCTCAATTCCTATGAAAGGTATCAAAAAGTTGTCGACTGGCA</left_flank>
        <right_flank>ATTATTTATCATTATATCACCAATATTTTATAAGTTAGCACAATTTTTAT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCGTCTCAAAATCCAAACGCAACTCTGTGCGCAAAACACGAATAATCCCTTTTTTATCTCTCTGCTATTATCAGCAGCACAGATTAGCACCGGAAAAATGTCTACACATGTCTAGAGGATTTGTTTCTGAATGAACTTTTCAGAGATTAAACTCAGTCTGAAACTCGCGAAATCAAAAGTTTTAAGTGATAGTGGCTGAAAACACTTTTTACAGGAGGAAATTGAGTCACAAAAAAGAGAGGACTTCCGGTTTGAAATCGAAACCTGTCAGTTTTGATAATGTCAATCTGATAGGTTGATAATTGATACAGAGACATTTGGGTTTTATGGGTTGAAAGTTTGAAAAAGAAAATTGGGAAGGCAGAAATTGTGAAATTTGTATTTTGTAAAATTGTTATAGCACCGTACTTCCTTGAATAGAAGCACAAACAAACTGTCAACTTTGAGCTCAATTATCTCAATTCCTATGAAAGGTATCAAAAAGTTGTCGACTGGCAAATTATTTATCATTATATCACCAATATTTTATAAGTTAGCACAATTTTTATACCTTTTACAGAAGTCAAGATAATTGAGCTCAAAGTTGACAGACTGGGCAGGTTTTTATTAGAATAAATAGGCTGGACCAACAGGCTCTATGATGTCTTTTTTAATCATAAAATACTGGTTCAGAGGAGTTTTATACAGTTTTTGAAGTTTTAGTTCTTTCATTTTCTATCTAAAATTCTAATTTTAAAAGCGGTTAAAATTTATTTTCGGTTAAAACATTTTCGGTCAGACTAATAAAACGTCCCACCCCCGTCAATTTTGAGCCCATATATCTCATTTGCTGTGAACTGTATCAACAAATAGTCAACTGATAAAACATTTATCGTAATGTCAAAAATATTTTGTCAGTCGATCACTTTTTGATATATGCTCCGGAAACCGAGATACAAGAGATCAAAGTTGAAAGTTAGGGGGCGCTCTAAAATTTCCTCTTTAAACAAAATTATGAC</canonical>
            <polymorphic>TTCCGTCTCAAAATCCAAACGCAACTCTGTGCGCAAAACACGAATAATCCCTTTTTTATCTCTCTGCTATTATCAGCAGCACAGATTAGCACCGGAAAAATGTCTACACATGTCTAGAGGATTTGTTTCTGAATGAACTTTTCAGAGATTAAACTCAGTCTGAAACTCGCGAAATCAAAAGTTTTAAGTGATAGTGGCTGAAAACACTTTTTACAGGAGGAAATTGAGTCACAAAAAAGAGAGGACTTCCGGTTTGAAATCGAAACCTGTCAGTTTTGATAATGTCAATCTGATAGGTTGATAATTGATACAGAGACATTTGGGTTTTATGGGTTGAAAGTTTGAAAAAGAAAATTGGGAAGGCAGAAATTGTGAAATTTGTATTTTGTAAAATTGTTATAGCACCGTACTTCCTTGAATAGAAGCACAAACAAACTGTCAACTTTGAGCTCAATTATCTCAATTCCTATGAAAGGTATCAAAAAGTTGTCGACTGGCAWATTATTTATCATTATATCACCAATATTTTATAAGTTAGCACAATTTTTATACCTTTTACAGAAGTCAAGATAATTGAGCTCAAAGTTGACAGACTGGGCAGGTTTTTATTAGAATAAATAGGCTGGACCAACAGGCTCTATGATGTCTTTTTTAATCATAAAATACTGGTTCAGAGGAGTTTTATACAGTTTTTGAAGTTTTAGTTCTTTCATTTTCTATCTAAAATTCTAATTTTAAAAGCGGTTAAAATTTATTTTCGGTTAAAACATTTTCGGTCAGACTAATAAAACGTCCCACCCCCGTCAATTTTGAGCCCATATATCTCATTTGCTGTGAACTGTATCAACAAATAGTCAACTGATAAAACATTTATCGTAATGTCAAAAATATTTTGTCAGTCGATCACTTTTTGATATATGCTCCGGAAACCGAGATACAAGAGATCAAAGTTGAAAGTTAGGGGGCGCTCTAAAATTTCCTCTTTAAACAAAATTATGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>221 168 153 81 61 57 50 42 38 30 18 18 16 15 9 9 8 6</canonical_bands>
                <polymorphic_bands>221 168 153 81 80 61 57 50 30 18 18 16 15 9 9 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAATTGTGAAATTTGTATTTTG</pcr_primer_p1>
		<pcr_primer_p2>TCTAATAAAAACCTGCCCAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGAAATTGTGAAATTTGTATTTTGTAAAATTGTTATAGCACCGTACTTCCTTGAATAGAAGCACAAACAAACTGTCAACTTTGAGCTCAATTATCTCAATTCCTATGAAAGGTATCAAAAAGTTGTCGACTGGCAAATTATTTATCATTATATCACCAATATTTTATAAGTTAGCACAATTTTTATACCTTTTACAGAAGTCAAGATAATTGAGCTCAAAGTTGACAGACTGGGCAGGTTTTTATTAGA</canonical_amplicon>
		<polymorphic_amplicon>AGAAATTGTGAAATTTGTATTTTGTAAAATTGTTATAGCACCGTACTTCCTTGAATAGAAGCACAAACAAACTGTCAACTTTGAGCTCAATTATCTCAATTCCTATGAAAGGTATCAAAAAGTTGTCGACTGGCAWATTATTTATCATTATATCACCAATATTTTATAAGTTAGCACAATTTTTATACCTTTTACAGAAGTCAAGATAATTGAGCTCAAAGTTGACAGACTGGGCAGGTTTTTATTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37065</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>595790</contig_pos>
        <strand>+</strand>
        <context>GGCGAATTTA[C/T]GAGAGAGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGCTACAGCGCAATGCGTCACTACCGACTGAGCCACGCGGGCGAATTTA</left_flank>
        <right_flank>GAGAGAGAGAGAGAGAGTCTCAATGCATATATAAGAGCTGGCATAACACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTATTTACTAAATCTAAACCTTATTATTGGATGATGACAAAATATCCTTGAATGGCTTGATCTTCTTCGTAGCATAGAGAGCGAACAGCATGGAAATCCTGGTTTCCTTATTCAGACTCGTCAAGTTTTGTTTTGAATCCACGACGGTGCTGCAGACTCCGGACCCTTCTTCTTCGTCAATTTCATTGGAAGCAGCTTTTTCTCCAACATCCATACGAAGACGTACACGGAATGAGGACACAATGAGGACAATGATGAGTTGGATTCCAAAGATGTAGAGGAAGATTCGCCATCCGAAGACGCTGATGAGGAAAGCCAGTGGACTTCCAGCAAGCATGGAACCAGCTGAAAATTGGAAATTAGAAATTTTAGAAATTTTAATAATTCTTTTCTCGAAATTTTGCTCATAAACACCTCTGGAGGAGTTGAACTTGTGGGTCTACCGCTAGAGCTACAGCGCAATGCGTCACTACCGACTGAGCCACGCGGGCGAATTTAAGAGAGAGAGAGAGAGAGTCTCAATGCATATATAAGAGCTGGCATAACACAGAGTGAACATTGAGCATCAGATAAAAACTTACAGCTAGCAATGAAAGAAATGAAGGCGCTCACTGTTCCTTGAATGTTCTTGAATCCAGCTTGAGATGCAATCATACACCAGACATTGATCGATCCGTTCACAAACATTCCAGCCAAGAATCCAAAGATTGAGCTCAACTCAGCGAATTCAAAGATTCCAGCTGCAGAGAACATCATCAGACAAGTATAAGACACAGCGATGACACGTCTAGTAGCATCCACATCGAATTTGCGAGTAGCCAAATCGATCACGATGCCAGAAGCCATGGTTCCAACAAGTCCTCCGATTTCATAGGTGATTTGAAAAGCGTCTGGAGAGATTTTGGAGTCGGTCAGGAAGAGTTGAACCCATGTTTCACAGATTGTTCGCATCTGAAAGTGTGACAAATTTTGATTGTTGGAATTTTAGAATTTTAGGAT</canonical>
            <polymorphic>TCTATTTACTAAATCTAAACCTTATTATTGGATGATGACAAAATATCCTTGAATGGCTTGATCTTCTTCGTAGCATAGAGAGCGAACAGCATGGAAATCCTGGTTTCCTTATTCAGACTCGTCAAGTTTTGTTTTGAATCCACGACGGTGCTGCAGACTCCGGACCCTTCTTCTTCGTCAATTTCATTGGAAGCAGCTTTTTCTCCAACATCCATACGAAGACGTACACGGAATGAGGACACAATGAGGACAATGATGAGTTGGATTCCAAAGATGTAGAGGAAGATTCGCCATCCGAAGACGCTGATGAGGAAAGCCAGTGGACTTCCAGCAAGCATGGAACCAGCTGAAAATTGGAAATTAGAAATTTTAGAAATTTTAATAATTCTTTTCTCGAAATTTTGCTCATAAACACCTCTGGAGGAGTTGAACTTGTGGGTCTACCGCTAGAGCTACAGCGCAATGCGTCACTACCGACTGAGCCACGCGGGCGAATTTAYGAGAGAGAGAGAGAGAGTCTCAATGCATATATAAGAGCTGGCATAACACAGAGTGAACATTGAGCATCAGATAAAAACTTACAGCTAGCAATGAAAGAAATGAAGGCGCTCACTGTTCCTTGAATGTTCTTGAATCCAGCTTGAGATGCAATCATACACCAGACATTGATCGATCCGTTCACAAACATTCCAGCCAAGAATCCAAAGATTGAGCTCAACTCAGCGAATTCAAAGATTCCAGCTGCAGAGAACATCATCAGACAAGTATAAGACACAGCGATGACACGTCTAGTAGCATCCACATCGAATTTGCGAGTAGCCAAATCGATCACGATGCCAGAAGCCATGGTTCCAACAAGTCCTCCGATTTCATAGGTGATTTGAAAAGCGTCTGGAGAGATTTTGGAGTCGGTCAGGAAGAGTTGAACCCATGTTTCACAGATTGTTCGCATCTGAAAGTGTGACAAATTTTGATTGTTGGAATTTTAGAATTTTAGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>503 379 118</canonical_bands>
                <polymorphic_bands>621 379</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTGAAAATTGGAAATTAGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCATTGCTAGCTGTAAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTGAAAATTGGAAATTAGAAATTTTAGAAATTTTAATAATTCTTTTCTCGAAATTTTGCTCATAAACACCTCTGGAGGAGTTGAACTTGTGGGTCTACCGCTAGAGCTACAGCGCAATGCGTCACTACCGACTGAGCCACGCGGGCGAATTTAAGAGAGAGAGAGAGAGAGTCTCAATGCATATATAAGAGCTGGCATAACACAGAGTGAACATTGAGCATCAGATAAAAACTTACAGCTAGCAATGAA</canonical_amplicon>
		<polymorphic_amplicon>GCTGAAAATTGGAAATTAGAAATTTTAGAAATTTTAATAATTCTTTTCTCGAAATTTTGCTCATAAACACCTCTGGAGGAGTTGAACTTGTGGGTCTACCGCTAGAGCTACAGCGCAATGCGTCACTACCGACTGAGCCACGCGGGCGAATTTAYGAGAGAGAGAGAGAGAGTCTCAATGCATATATAAGAGCTGGCATAACACAGAGTGAACATTGAGCATCAGATAAAAACTTACAGCTAGCAATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37068</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>659047</contig_pos>
        <strand></strand>
        <context>ATTTGAGCCA[C/A]atttgaaact</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATATAAGAAAGAGGGGAGGCGCGGCGCCCTTAAGAGTCAAATTTGAGCCA</left_flank>
        <right_flank>ATTTGAAACTTGATTTTCTCGAAACTGGTAGCTCCTCAGCAAAATCTGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAACAATTTTTAGCGAATTTTTTCCCATTTTCTTCTGTTTTTGATTGCATATCAAATTTAAATGGAAACTGCCATAAGTCTTTTTCAAAACCAAAACATTGAGTTTCGAAAAATCAGTAATATGTCGTTCAAAATATTAAAAAAATATGGAATAATAAAGGAAAAGTACGAAATCGGAAGACTGAACAAAATCACATCACAATAGAACTTAACTGATACTTCTAGGAACCCCTAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGTCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGCCACTGCTGTTTGGTTCTTTCCCTTCCCCCATCTATATAAGAAAGAGGGGAGGCGCGGCGCCCTTAAGAGTCAAATTTGAGCCACATTTGAAACTTGATTTTCTCGAAACTGGTAGCTCCTCAGCAAAATCTGAATATATTTGAAAATCTCTCATTCTCAGCTTTCGAATTATATAGGTCTCATACCGAAGTTCCACCCCCCGATTACAACCTTCCCTAGTTAGGGTAGTATGCATACGTGATTTTCATCGAAAGACGACCCAAACGATTTCCATTATATAGGGAGGTGTTCTGGATGTACCGATATCTCCCAGGTTCCTCCGTCCACTATACTTTGCGTGCAAAGTGGGCGGGGCTTAGGTCGACTACCTTATTAGAGACGTTTCATCATTTTTCGAGCGTTTTTCACCGTTTTTTTTTCGATTTTTCGGAAGATTCAAGCATATAAGAATTCTTTTGGTTAATTAAAAAAATTTTTTTTTGGGTACTGTAGCCTACAATATCTTCACGGGCTCCCAAAAAACGAGCAATTTTTCTTGGAAATATAAAAATCAAAATTTTAAATAGTCATTCATGATAAAAATT</canonical>
            <polymorphic>AAAAACAATTTTTAGCGAATTTTTTCCCATTTTCTTCTGTTTTTGATTGCATATCAAATTTAAATGGAAACTGCCATAAGTCTTTTTCAAAACCAAAACATTGAGTTTCGAAAAATCAGTAATATGTCGTTCAAAATATTAAAAAAATATGGAATAATAAAGGAAAAGTACGAAATCGGAAGACTGAACAAAATCACATCACAATAGAACTTAACTGATACTTCTAGGAACCCCTAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGTCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGCCACTGCTGTTTGGTTCTTTCCCTTCCCCCATCTATATAAGAAAGAGGGGAGGCGCGGCGCCCTTAAGAGTCAAATTTGAGCCAMATTTGAAACTTGATTTTCTCGAAACTGGTAGCTCCTCAGCAAAATCTGAATATATTTGAAAATCTCTCATTCTCAGCTTTCGAATTATATAGGTCTCATACCGAAGTTCCACCCCCCGATTACAACCTTCCCTAGTTAGGGTAGTATGCATACGTGATTTTCATCGAAAGACGACCCAAACGATTTCCATTATATAGGGAGGTGTTCTGGATGTACCGATATCTCCCAGGTTCCTCCGTCCACTATACTTTGCGTGCAAAGTGGGCGGGGCTTAGGTCGACTACCTTATTAGAGACGTTTCATCATTTTTCGAGCGTTTTTCACCGTTTTTTTTTCGATTTTTCGGAAGATTCAAGCATATAAGAATTCTTTTGGTTAATTAAAAAAATTTTTTTTTGGGTACTGTAGCCTACAATATCTTCACGGGCTCCCAAAAAACGAGCAATTTTTCTTGGAAATATAAAAATCAAAATTTTAAATAGTCATTCATGATAAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>196 112 109 100 81 77 64 60 48 45 39 38 14 7 5 3 2</canonical_bands>
                <polymorphic_bands>196 193 109 100 77 64 60 48 45 39 38 14 7 5 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCCCCCATCTATATAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGCCCGTGAAGATATTGTA</pcr_primer_p2>
		<pcr_amplicon_size>493</pcr_amplicon_size>
		<canonical_amplicon>CTTCCCCCATCTATATAAGAAAGAGGGGAGGCGCGGCGCCCTTAAGAGTCAAATTTGAGCCACATTTGAAACTTGATTTTCTCGAAACTGGTAGCTCCTCAGCAAAATCTGAATATATTTGAAAATCTCTCATTCTCAGCTTTCGAATTATATAGGTCTCATACCGAAGTTCCACCCCCCGATTACAACCTTCCCTAGTTAGGGTAGTATGCATACGTGATTTTCATCGAAAGACGACCCAAACGATTTCCATTATATAGGGAGGTGTTCTGGATGTACCGATATCTCCCAGGTTCCTCCGTCCACTATACTTTGCGTGCAAAGTGGGCGGGGCTTAGGTCGACTACCTTATTAGAGACGTTTCATCATTTTTCGAGCGTTTTTCACCGTTTTTTTTTCGATTTTTCGGAAGATTCAAGCATATAAGAATTCTTTTGGTTAATTAAAAAAATTTTTTTTTGGGTACTGTAGCCTACAATATCTTCACGGGCTC</canonical_amplicon>
		<polymorphic_amplicon>CTTCCCCCATCTATATAAGAAAGAGGGGAGGCGCGGCGCCCTTAAGAGTCAAATTTGAGCCAMATTTGAAACTTGATTTTCTCGAAACTGGTAGCTCCTCAGCAAAATCTGAATATATTTGAAAATCTCTCATTCTCAGCTTTCGAATTATATAGGTCTCATACCGAAGTTCCACCCCCCGATTACAACCTTCCCTAGTTAGGGTAGTATGCATACGTGATTTTCATCGAAAGACGACCCAAACGATTTCCATTATATAGGGAGGTGTTCTGGATGTACCGATATCTCCCAGGTTCCTCCGTCCACTATACTTTGCGTGCAAAGTGGGCGGGGCTTAGGTCGACTACCTTATTAGAGACGTTTCATCATTTTTCGAGCGTTTTTCACCGTTTTTTTTTCGATTTTTCGGAAGATTCAAGCATATAAGAATTCTTTTGGTTAATTAAAAAAATTTTTTTTTGGGTACTGTAGCCTACAATATCTTCACGGGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37069</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>659258</contig_pos>
        <strand></strand>
        <context>ggtgttctgg[A/G]tgtaccgata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATCGAAAGACGACCCAAACGATTTCCATTATATAGGGAGGTGTTCTGG</left_flank>
        <right_flank>TGTACCGATATCTCCCAGGTTCCTCCGTCCACTATACTTTGCGTGCAAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACTGATACTTCTAGGAACCCCTAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGTCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGCCACTGCTGTTTGGTTCTTTCCCTTCCCCCATCTATATAAGAAAGAGGGGAGGCGCGGCGCCCTTAAGAGTCAAATTTGAGCCACATTTGAAACTTGATTTTCTCGAAACTGGTAGCTCCTCAGCAAAATCTGAATATATTTGAAAATCTCTCATTCTCAGCTTTCGAATTATATAGGTCTCATACCGAAGTTCCACCCCCCGATTACAACCTTCCCTAGTTAGGGTAGTATGCATACGTGATTTTCATCGAAAGACGACCCAAACGATTTCCATTATATAGGGAGGTGTTCTGGATGTACCGATATCTCCCAGGTTCCTCCGTCCACTATACTTTGCGTGCAAAGTGGGCGGGGCTTAGGTCGACTACCTTATTAGAGACGTTTCATCATTTTTCGAGCGTTTTTCACCGTTTTTTTTTCGATTTTTCGGAAGATTCAAGCATATAAGAATTCTTTTGGTTAATTAAAAAAATTTTTTTTTGGGTACTGTAGCCTACAATATCTTCACGGGCTCCCAAAAAACGAGCAATTTTTCTTGGAAATATAAAAATCAAAATTTTAAATAGTCATTCATGATAAAAATTTCTCCAGTGTTCAAATTTTACAATTTCTGACAATCATCTCTCCTTTCCAATCTATAAAAACATTGATTTCCGGCATTTTTATTCAATTATTCGTAACGAAATCGGGCCCAAATGGATAATAACAAAAAGAAGAATAAAATTATACGACAACAAATCAAACAATTGACAAAATTCAAAGAAACAAAGAACAAACAAAAATCAACCATTTGAG</canonical>
            <polymorphic>TAACTGATACTTCTAGGAACCCCTAACCAACGTTTTAGTTCATTTCATCGAGTGCCAGCAAGCCAGGCGAGGAGATGCTTTGCGGCGGCGGTGTGCCCCATATGCCCCGTATATGCCCCATACCGGCGTCCTTTCCCTGTACCCAATTCATCGGCGCGTCCTCCGTCGCCCATCCATTATGCGTATGCGCGCCCAGGACCTGTGCCACTGCTGTTTGGTTCTTTCCCTTCCCCCATCTATATAAGAAAGAGGGGAGGCGCGGCGCCCTTAAGAGTCAAATTTGAGCCACATTTGAAACTTGATTTTCTCGAAACTGGTAGCTCCTCAGCAAAATCTGAATATATTTGAAAATCTCTCATTCTCAGCTTTCGAATTATATAGGTCTCATACCGAAGTTCCACCCCCCGATTACAACCTTCCCTAGTTAGGGTAGTATGCATACGTGATTTTCATCGAAAGACGACCCAAACGATTTCCATTATATAGGGAGGTGTTCTGGRTGTACCGATATCTCCCAGGTTCCTCCGTCCACTATACTTTGCGTGCAAAGTGGGCGGGGCTTAGGTCGACTACCTTATTAGAGACGTTTCATCATTTTTCGAGCGTTTTTCACCGTTTTTTTTTCGATTTTTCGGAAGATTCAAGCATATAAGAATTCTTTTGGTTAATTAAAAAAATTTTTTTTTGGGTACTGTAGCCTACAATATCTTCACGGGCTCCCAAAAAACGAGCAATTTTTCTTGGAAATATAAAAATCAAAATTTTAAATAGTCATTCATGATAAAAATTTCTCCAGTGTTCAAATTTTACAATTTCTGACAATCATCTCTCCTTTCCAATCTATAAAAACATTGATTTCCGGCATTTTTATTCAATTATTCGTAACGAAATCGGGCCCAAATGGATAATAACAAAAAGAAGAATAAAATTATACGACAACAAATCAAACAATTGACAAAATTCAAAGAAACAAAGAACAAACAAAAATCAACCATTTGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>307 281 223 189</canonical_bands>
                <polymorphic_bands>470 307 223</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCCCCCATCTATATAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGCCCGTGAAGATATTGTA</pcr_primer_p2>
		<pcr_amplicon_size>493</pcr_amplicon_size>
		<canonical_amplicon>CTTCCCCCATCTATATAAGAAAGAGGGGAGGCGCGGCGCCCTTAAGAGTCAAATTTGAGCCACATTTGAAACTTGATTTTCTCGAAACTGGTAGCTCCTCAGCAAAATCTGAATATATTTGAAAATCTCTCATTCTCAGCTTTCGAATTATATAGGTCTCATACCGAAGTTCCACCCCCCGATTACAACCTTCCCTAGTTAGGGTAGTATGCATACGTGATTTTCATCGAAAGACGACCCAAACGATTTCCATTATATAGGGAGGTGTTCTGGATGTACCGATATCTCCCAGGTTCCTCCGTCCACTATACTTTGCGTGCAAAGTGGGCGGGGCTTAGGTCGACTACCTTATTAGAGACGTTTCATCATTTTTCGAGCGTTTTTCACCGTTTTTTTTTCGATTTTTCGGAAGATTCAAGCATATAAGAATTCTTTTGGTTAATTAAAAAAATTTTTTTTTGGGTACTGTAGCCTACAATATCTTCACGGGCTC</canonical_amplicon>
		<polymorphic_amplicon>CTTCCCCCATCTATATAAGAAAGAGGGGAGGCGCGGCGCCCTTAAGAGTCAAATTTGAGCCACATTTGAAACTTGATTTTCTCGAAACTGGTAGCTCCTCAGCAAAATCTGAATATATTTGAAAATCTCTCATTCTCAGCTTTCGAATTATATAGGTCTCATACCGAAGTTCCACCCCCCGATTACAACCTTCCCTAGTTAGGGTAGTATGCATACGTGATTTTCATCGAAAGACGACCCAAACGATTTCCATTATATAGGGAGGTGTTCTGGRTGTACCGATATCTCCCAGGTTCCTCCGTCCACTATACTTTGCGTGCAAAGTGGGCGGGGCTTAGGTCGACTACCTTATTAGAGACGTTTCATCATTTTTCGAGCGTTTTTCACCGTTTTTTTTTCGATTTTTCGGAAGATTCAAGCATATAAGAATTCTTTTGGTTAATTAAAAAAATTTTTTTTTGGGTACTGTAGCCTACAATATCTTCACGGGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37070</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>686672</contig_pos>
        <strand>+</strand>
        <context>TTCGAAATAA[A/G]GATTCTGAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGCCGAGGCCCGGCCGCCGTTTTGGACAGCCCTGGTATTTTCGAAATAA</left_flank>
        <right_flank>GATTCTGAGGAGAAAATTTTGCGAATTGGGATTTATCCAGAATCTCGACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTTGGGGCGCTTGATCCGCCCAGAGTACGTTGAAGGAAAGTGAGATGACGTGCAGGTGGTTGGCTTTGTGGTGGCGCCTGATATCTCATTTCCTCAAAACTTTTTCCCAAATCGTCCAGAAGCTTCTGAGCATCGTTCACGATATCAATCGGAATCTGAAATTGAATAAATCAAATGAATAAATCGGCATAAACCGACCATCACTGGCGTTCGAAATGTTCATGTCGCCACAGATCGATGGAAAAATCGAGAAAAGTCTCGAAAAATGTGATTTGCTGAAAAAGAGCGAGAAAAAACAAAAAATTTAAAAAAAATACGCAACTTGTCGTAAAATATGCGACTTGCTGACCGTAGTCACATTTGCGAGGCCGGCCGAGGCCTCGCGAGGCTTTTTCTCAATGGAGCGCGCCGAGGCCTTTTTTCTTCGGCCGAGGATTTTTCGAGGCCGGCCGAGGCCCGGCCGCCGTTTTGGACAGCCCTGGTATTTTCGAAATAAAGATTCTGAGGAGAAAATTTTGCGAATTGGGATTTATCCAGAATCTCGACTCATTTGTTTTGATATTACTGAATTAAGTAATGTTTCGAATGAAGCGATTTTACAAGAATAAATCAAAAACCAATTAATTTGGTGACTTCTAATCTCTTTTTAATTTTTGATTTAATTTTGTTGTTTCAGTAAAAATTTCGTATTATGAAAAACCTTCAGTAATCAAAAATGAAGCTCTTTTTTTAATTTACAGAACAAGCAGACAATTTCCACCTACTATTTCATAGCCCTAAACTTTCCTATTAATTACTTTAAAAACGTCTTTATCGTTCATTTTTGTGCGGTACCGTATCTTAACATTAAAAAAAAAACATTCACCACTCTTCTTATACAATAACGTCGTCCGCTTTTTGATCTTATGGTATATAAAATCCCTTCACTTTTCTCAGTTTCATTTTGGTCCAGAGTTGATGGGTTATCGTTATTATGGTTTTTCAAAGTTTATAAAAA</canonical>
            <polymorphic>CTTTTTGGGGCGCTTGATCCGCCCAGAGTACGTTGAAGGAAAGTGAGATGACGTGCAGGTGGTTGGCTTTGTGGTGGCGCCTGATATCTCATTTCCTCAAAACTTTTTCCCAAATCGTCCAGAAGCTTCTGAGCATCGTTCACGATATCAATCGGAATCTGAAATTGAATAAATCAAATGAATAAATCGGCATAAACCGACCATCACTGGCGTTCGAAATGTTCATGTCGCCACAGATCGATGGAAAAATCGAGAAAAGTCTCGAAAAATGTGATTTGCTGAAAAAGAGCGAGAAAAAACAAAAAATTTAAAAAAAATACGCAACTTGTCGTAAAATATGCGACTTGCTGACCGTAGTCACATTTGCGAGGCCGGCCGAGGCCTCGCGAGGCTTTTTCTCAATGGAGCGCGCCGAGGCCTTTTTTCTTCGGCCGAGGATTTTTCGAGGCCGGCCGAGGCCCGGCCGCCGTTTTGGACAGCCCTGGTATTTTCGAAATAARGATTCTGAGGAGAAAATTTTGCGAATTGGGATTTATCCAGAATCTCGACTCATTTGTTTTGATATTACTGAATTAAGTAATGTTTCGAATGAAGCGATTTTACAAGAATAAATCAAAAACCAATTAATTTGGTGACTTCTAATCTCTTTTTAATTTTTGATTTAATTTTGTTGTTTCAGTAAAAATTTCGTATTATGAAAAACCTTCAGTAATCAAAAATGAAGCTCTTTTTTTAATTTACAGAACAAGCAGACAATTTCCACCTACTATTTCATAGCCCTAAACTTTCCTATTAATTACTTTAAAAACGTCTTTATCGTTCATTTTTGTGCGGTACCGTATCTTAACATTAAAAAAAAAACATTCACCACTCTTCTTATACAATAACGTCGTCCGCTTTTTGATCTTATGGTATATAAAATCCCTTCACTTTTCTCAGTTTCATTTTGGTCCAGAGTTGATGGGTTATCGTTATTATGGTTTTTCAAAGTTTATAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCAACTTGTCGTAAAATATG</pcr_primer_p1>
		<pcr_primer_p2>TATCAAAACAAATGAGTCGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CGCAACTTGTCGTAAAATATGCGACTTGCTGACCGTAGTCACATTTGCGAGGCCGGCCGAGGCCTCGCGAGGCTTTTTCTCAATGGAGCGCGCCGAGGCCTTTTTTCTTCGGCCGAGGATTTTTCGAGGCCGGCCGAGGCCCGGCCGCCGTTTTGGACAGCCCTGGTATTTTCGAAATAAAGATTCTGAGGAGAAAATTTTGCGAATTGGGATTTATCCAGAATCTCGACTCATTTGTTTTGATA</canonical_amplicon>
		<polymorphic_amplicon>CGCAACTTGTCGTAAAATATGCGACTTGCTGACCGTAGTCACATTTGCGAGGCCGGCCGAGGCCTCGCGAGGCTTTTTCTCAATGGAGCGCGCCGAGGCCTTTTTTCTTCGGCCGAGGATTTTTCGAGGCCGGCCGAGGCCCGGCCGCCGTTTTGGACAGCCCTGGTATTTTCGAAATAARGATTCTGAGGAGAAAATTTTGCGAATTGGGATTTATCCAGAATCTCGACTCATTTGTTTTGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37071</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>686698</contig_pos>
        <strand>+</strand>
        <context>ATTTTGCGAA[C/T]TGGGATTTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAGCCCTGGTATTTTCGAAATAAAGATTCTGAGGAGAAAATTTTGCGAA</left_flank>
        <right_flank>TGGGATTTATCCAGAATCTCGACTCATTTGTTTTGATATTACTGAATTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTACGTTGAAGGAAAGTGAGATGACGTGCAGGTGGTTGGCTTTGTGGTGGCGCCTGATATCTCATTTCCTCAAAACTTTTTCCCAAATCGTCCAGAAGCTTCTGAGCATCGTTCACGATATCAATCGGAATCTGAAATTGAATAAATCAAATGAATAAATCGGCATAAACCGACCATCACTGGCGTTCGAAATGTTCATGTCGCCACAGATCGATGGAAAAATCGAGAAAAGTCTCGAAAAATGTGATTTGCTGAAAAAGAGCGAGAAAAAACAAAAAATTTAAAAAAAATACGCAACTTGTCGTAAAATATGCGACTTGCTGACCGTAGTCACATTTGCGAGGCCGGCCGAGGCCTCGCGAGGCTTTTTCTCAATGGAGCGCGCCGAGGCCTTTTTTCTTCGGCCGAGGATTTTTCGAGGCCGGCCGAGGCCCGGCCGCCGTTTTGGACAGCCCTGGTATTTTCGAAATAAAGATTCTGAGGAGAAAATTTTGCGAATTGGGATTTATCCAGAATCTCGACTCATTTGTTTTGATATTACTGAATTAAGTAATGTTTCGAATGAAGCGATTTTACAAGAATAAATCAAAAACCAATTAATTTGGTGACTTCTAATCTCTTTTTAATTTTTGATTTAATTTTGTTGTTTCAGTAAAAATTTCGTATTATGAAAAACCTTCAGTAATCAAAAATGAAGCTCTTTTTTTAATTTACAGAACAAGCAGACAATTTCCACCTACTATTTCATAGCCCTAAACTTTCCTATTAATTACTTTAAAAACGTCTTTATCGTTCATTTTTGTGCGGTACCGTATCTTAACATTAAAAAAAAAACATTCACCACTCTTCTTATACAATAACGTCGTCCGCTTTTTGATCTTATGGTATATAAAATCCCTTCACTTTTCTCAGTTTCATTTTGGTCCAGAGTTGATGGGTTATCGTTATTATGGTTTTTCAAAGTTTATAAAAAATAATATTGGTTCCGAAATTGTTGCA</canonical>
            <polymorphic>AGTACGTTGAAGGAAAGTGAGATGACGTGCAGGTGGTTGGCTTTGTGGTGGCGCCTGATATCTCATTTCCTCAAAACTTTTTCCCAAATCGTCCAGAAGCTTCTGAGCATCGTTCACGATATCAATCGGAATCTGAAATTGAATAAATCAAATGAATAAATCGGCATAAACCGACCATCACTGGCGTTCGAAATGTTCATGTCGCCACAGATCGATGGAAAAATCGAGAAAAGTCTCGAAAAATGTGATTTGCTGAAAAAGAGCGAGAAAAAACAAAAAATTTAAAAAAAATACGCAACTTGTCGTAAAATATGCGACTTGCTGACCGTAGTCACATTTGCGAGGCCGGCCGAGGCCTCGCGAGGCTTTTTCTCAATGGAGCGCGCCGAGGCCTTTTTTCTTCGGCCGAGGATTTTTCGAGGCCGGCCGAGGCCCGGCCGCCGTTTTGGACAGCCCTGGTATTTTCGAAATAAAGATTCTGAGGAGAAAATTTTGCGAAYTGGGATTTATCCAGAATCTCGACTCATTTGTTTTGATATTACTGAATTAAGTAATGTTTCGAATGAAGCGATTTTACAAGAATAAATCAAAAACCAATTAATTTGGTGACTTCTAATCTCTTTTTAATTTTTGATTTAATTTTGTTGTTTCAGTAAAAATTTCGTATTATGAAAAACCTTCAGTAATCAAAAATGAAGCTCTTTTTTTAATTTACAGAACAAGCAGACAATTTCCACCTACTATTTCATAGCCCTAAACTTTCCTATTAATTACTTTAAAAACGTCTTTATCGTTCATTTTTGTGCGGTACCGTATCTTAACATTAAAAAAAAAACATTCACCACTCTTCTTATACAATAACGTCGTCCGCTTTTTGATCTTATGGTATATAAAATCCCTTCACTTTTCTCAGTTTCATTTTGGTCCAGAGTTGATGGGTTATCGTTATTATGGTTTTTCAAAGTTTATAAAAAATAATATTGGTTCCGAAATTGTTGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>222 210 142 136 51 51 47 40 26 20 20 12 10 9 4</canonical_bands>
                <polymorphic_bands>222 210 142 136 56 51 51 40 26 20 20 12 10 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTGCTGACCGTAGTCACAT</pcr_primer_p1>
		<pcr_primer_p2>TTCATTCGAAACATTACTTAATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTGCTGACCGTAGTCACATTTGCGAGGCCGGCCGAGGCCTCGCGAGGCTTTTTCTCAATGGAGCGCGCCGAGGCCTTTTTTCTTCGGCCGAGGATTTTTCGAGGCCGGCCGAGGCCCGGCCGCCGTTTTGGACAGCCCTGGTATTTTCGAAATAAAGATTCTGAGGAGAAAATTTTGCGAATTGGGATTTATCCAGAATCTCGACTCATTTGTTTTGATATTACTGAATTAAGTAATGTTTCGAATGAA</canonical_amplicon>
		<polymorphic_amplicon>CTTGCTGACCGTAGTCACATTTGCGAGGCCGGCCGAGGCCTCGCGAGGCTTTTTCTCAATGGAGCGCGCCGAGGCCTTTTTTCTTCGGCCGAGGATTTTTCGAGGCCGGCCGAGGCCCGGCCGCCGTTTTGGACAGCCCTGGTATTTTCGAAATAAAGATTCTGAGGAGAAAATTTTGCGAAYTGGGATTTATCCAGAATCTCGACTCATTTGTTTTGATATTACTGAATTAAGTAATGTTTCGAATGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37072</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>688200</contig_pos>
        <strand>+</strand>
        <context>TGTTGTAGAT[A/G]GTYTGATCRT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTTTAAAAATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGAT</left_flank>
        <right_flank>GTCTGATCATTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGT</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGGAAGGCAACGGAGGACGGAAAGGAACCGTGTCCATCAACGAGGTCGACGACAACGACGTGCCAGGAGAGAACTGCTCACCGCTTTATTCAATATGATCTCGGATAGTCAGGCATAGGGCATTTCAAATAGTTATTGTAGATGATTTGATCATTGCTTCTATTTTTATTTTAACCTATTTATTTCTAACACTCTTTTTATGTTCATCTTTTGTCTTTAACTTTTTGTTTAAACCTTACTAATATATATTTCTTATATAAATCATATTTGAAAAAGCTGTGTTCTGTTCAAACTGTTGACAAAAAATGATATGACTCCTCGTAGAGCCCTGGGTATGGAGGAGTCAAGCTTGATAGGAAAGAAACTACCCAAAAGTTACAGATTTCGAAAACTATTCTTTTGTAGTAAAAAGAACCGATACTCATAAATCAGATTTATTTCAAGAAGCTTTAAAAATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAACAGTCGATATTATGAAAAACCAATAAAAAAAGTTAATTTTTGGTTTCAGAGTCTGCGGATTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTTGATTGGAGCAGCAAAAGCAGAGATAGCAAGGGAGACGAAAAGGAAGTAGAATAGGTTGAACATATTCAAGTTTTGATAGTTTTCAATTGAAGATCCAAACCTTTTATACTAGAACTTCGTATTTTGATTTTCATGCTGACTCAGGCCGCTTTAAAATATAAAATAACAAAAATCGTATTTAGTTCCCCTAT</canonical>
            <polymorphic>AATTGGAAGGCAACGGAGGACGGAAAGGAACCGTGTCCATCAACGAGGTCGACGACAACGACGTGCCAGGAGAGAACTGCTCACCGCTTTATTCAATATGATCTCGGATAGTCAGGCATAGGGCATTTCAAATAGTTATTGTAGATGATTTGATCATTGCTTCTATTTTTATTTTAACCTATTTATTTCTAACACTCTTTTTATGTTCATCTTTTGTCTTTAACTTTTTGTTTAAACCTTACTAATATATATTTCTTATATAAATCATATTTGAAAAAGCTGTGTTCTGTTCAAACTGTTGACAAAAAATGATATGACTCCTCGTAGAGCCCTGGGTATGGAGGAGTCAAGCTTGATAGGAAAGAAACTACCCAAAAGTTACAGATTTCGAAAACTATTCTTTTGTAGTAAAAAGAACCGATACTCATAAATCAGATTTATTTCAAGAAGCTTTAAAAATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATRGTCTGATCATTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAACAGTCGATATTATGAAAAACCAATAAAAAAAGTTAATTTTTGGTTTCAGAGTCTGCGGATTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTTGATTGGAGCAGCAAAAGCAGAGATAGCAAGGGAGACGAAAAGGAAGTAGAATAGGTTGAACATATTCAAGTTTTGATAGTTTTCAATTGAAGATCCAAACCTTTTATACTAGAACTTCGTATTTTGATTTTCATGCTGACTCAGGCCGCTTTAAAATATAAAATAACAAAAATCGTATTTAGTTCCCCTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATGATATGACTCCTCGTAGA</pcr_primer_p1>
		<pcr_primer_p2>ATACACAACTGATGCTCAGAACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAATGATATGACTCCTCGTAGAGCCCTGGGTATGGAGGAGTCAAGCTTGATAGGAAAGAAACTACCCAAAAGTTACAGATTTCGAAAACTATTCTTTTGTAGTAAAAAGAACCGATACTCATAAATCAGATTTATTTCAAGAAGCTTTAAAAATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTAT</canonical_amplicon>
		<polymorphic_amplicon>AAAATGATATGACTCCTCGTAGAGCCCTGGGTATGGAGGAGTCAAGCTTGATAGGAAAGAAACTACCCAAAAGTTACAGATTTCGAAAACTATTCTTTTGTAGTAAAAAGAACCGATACTCATAAATCAGATTTATTTCAAGAAGCTTTAAAAATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATRGTCTGATCATTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37073</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>688203</contig_pos>
        <strand>+</strand>
        <context>TGTAGATRGT[C/T]TGATCRTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAAAATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGT</left_flank>
        <right_flank>TGATCATTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTA</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAAGGCAACGGAGGACGGAAAGGAACCGTGTCCATCAACGAGGTCGACGACAACGACGTGCCAGGAGAGAACTGCTCACCGCTTTATTCAATATGATCTCGGATAGTCAGGCATAGGGCATTTCAAATAGTTATTGTAGATGATTTGATCATTGCTTCTATTTTTATTTTAACCTATTTATTTCTAACACTCTTTTTATGTTCATCTTTTGTCTTTAACTTTTTGTTTAAACCTTACTAATATATATTTCTTATATAAATCATATTTGAAAAAGCTGTGTTCTGTTCAAACTGTTGACAAAAAATGATATGACTCCTCGTAGAGCCCTGGGTATGGAGGAGTCAAGCTTGATAGGAAAGAAACTACCCAAAAGTTACAGATTTCGAAAACTATTCTTTTGTAGTAAAAAGAACCGATACTCATAAATCAGATTTATTTCAAGAAGCTTTAAAAATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAACAGTCGATATTATGAAAAACCAATAAAAAAAGTTAATTTTTGGTTTCAGAGTCTGCGGATTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTTGATTGGAGCAGCAAAAGCAGAGATAGCAAGGGAGACGAAAAGGAAGTAGAATAGGTTGAACATATTCAAGTTTTGATAGTTTTCAATTGAAGATCCAAACCTTTTATACTAGAACTTCGTATTTTGATTTTCATGCTGACTCAGGCCGCTTTAAAATATAAAATAACAAAAATCGTATTTAGTTCCCCTATTTT</canonical>
            <polymorphic>TGGAAGGCAACGGAGGACGGAAAGGAACCGTGTCCATCAACGAGGTCGACGACAACGACGTGCCAGGAGAGAACTGCTCACCGCTTTATTCAATATGATCTCGGATAGTCAGGCATAGGGCATTTCAAATAGTTATTGTAGATGATTTGATCATTGCTTCTATTTTTATTTTAACCTATTTATTTCTAACACTCTTTTTATGTTCATCTTTTGTCTTTAACTTTTTGTTTAAACCTTACTAATATATATTTCTTATATAAATCATATTTGAAAAAGCTGTGTTCTGTTCAAACTGTTGACAAAAAATGATATGACTCCTCGTAGAGCCCTGGGTATGGAGGAGTCAAGCTTGATAGGAAAGAAACTACCCAAAAGTTACAGATTTCGAAAACTATTCTTTTGTAGTAAAAAGAACCGATACTCATAAATCAGATTTATTTCAAGAAGCTTTAAAAATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTYTGATCATTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAACAGTCGATATTATGAAAAACCAATAAAAAAAGTTAATTTTTGGTTTCAGAGTCTGCGGATTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTTGATTGGAGCAGCAAAAGCAGAGATAGCAAGGGAGACGAAAAGGAAGTAGAATAGGTTGAACATATTCAAGTTTTGATAGTTTTCAATTGAAGATCCAAACCTTTTATACTAGAACTTCGTATTTTGATTTTCATGCTGACTCAGGCCGCTTTAAAATATAAAATAACAAAAATCGTATTTAGTTCCCCTATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>328 247 161 103 70 58 33</canonical_bands>
                <polymorphic_bands>328 247 161 103 103 58</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGCTTGATAGGAAAGAAACTA</pcr_primer_p1>
		<pcr_primer_p2>AACAAGGAAGCAACTGATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CAAGCTTGATAGGAAAGAAACTACCCAAAAGTTACAGATTTCGAAAACTATTCTTTTGTAGTAAAAAGAACCGATACTCATAAATCAGATTTATTTCAAGAAGCTTTAAAAATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTT</canonical_amplicon>
		<polymorphic_amplicon>CAAGCTTGATAGGAAAGAAACTACCCAAAAGTTACAGATTTCGAAAACTATTCTTTTGTAGTAAAAAGAACCGATACTCATAAATCAGATTTATTTCAAGAAGCTTTAAAAATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTYTGATCATTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37074</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>688209</contig_pos>
        <strand>+</strand>
        <context>TRGTYTGATC[A/G]TTTTCWGGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATC</left_flank>
        <right_flank>TTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGC</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAACGGAGGACGGAAAGGAACCGTGTCCATCAACGAGGTCGACGACAACGACGTGCCAGGAGAGAACTGCTCACCGCTTTATTCAATATGATCTCGGATAGTCAGGCATAGGGCATTTCAAATAGTTATTGTAGATGATTTGATCATTGCTTCTATTTTTATTTTAACCTATTTATTTCTAACACTCTTTTTATGTTCATCTTTTGTCTTTAACTTTTTGTTTAAACCTTACTAATATATATTTCTTATATAAATCATATTTGAAAAAGCTGTGTTCTGTTCAAACTGTTGACAAAAAATGATATGACTCCTCGTAGAGCCCTGGGTATGGAGGAGTCAAGCTTGATAGGAAAGAAACTACCCAAAAGTTACAGATTTCGAAAACTATTCTTTTGTAGTAAAAAGAACCGATACTCATAAATCAGATTTATTTCAAGAAGCTTTAAAAATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAACAGTCGATATTATGAAAAACCAATAAAAAAAGTTAATTTTTGGTTTCAGAGTCTGCGGATTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTTGATTGGAGCAGCAAAAGCAGAGATAGCAAGGGAGACGAAAAGGAAGTAGAATAGGTTGAACATATTCAAGTTTTGATAGTTTTCAATTGAAGATCCAAACCTTTTATACTAGAACTTCGTATTTTGATTTTCATGCTGACTCAGGCCGCTTTAAAATATAAAATAACAAAAATCGTATTTAGTTCCCCTATTTTAGTGAG</canonical>
            <polymorphic>GCAACGGAGGACGGAAAGGAACCGTGTCCATCAACGAGGTCGACGACAACGACGTGCCAGGAGAGAACTGCTCACCGCTTTATTCAATATGATCTCGGATAGTCAGGCATAGGGCATTTCAAATAGTTATTGTAGATGATTTGATCATTGCTTCTATTTTTATTTTAACCTATTTATTTCTAACACTCTTTTTATGTTCATCTTTTGTCTTTAACTTTTTGTTTAAACCTTACTAATATATATTTCTTATATAAATCATATTTGAAAAAGCTGTGTTCTGTTCAAACTGTTGACAAAAAATGATATGACTCCTCGTAGAGCCCTGGGTATGGAGGAGTCAAGCTTGATAGGAAAGAAACTACCCAAAAGTTACAGATTTCGAAAACTATTCTTTTGTAGTAAAAAGAACCGATACTCATAAATCAGATTTATTTCAAGAAGCTTTAAAAATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCRTTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAACAGTCGATATTATGAAAAACCAATAAAAAAAGTTAATTTTTGGTTTCAGAGTCTGCGGATTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTTGATTGGAGCAGCAAAAGCAGAGATAGCAAGGGAGACGAAAAGGAAGTAGAATAGGTTGAACATATTCAAGTTTTGATAGTTTTCAATTGAAGATCCAAACCTTTTATACTAGAACTTCGTATTTTGATTTTCATGCTGACTCAGGCCGCTTTAAAATATAAAATAACAAAAATCGTATTTAGTTCCCCTATTTTAGTGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>505 353 142</canonical_bands>
                <polymorphic_bands>858 142</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTTAAGCGAGTCCATATTT</pcr_primer_p1>
		<pcr_primer_p2>TCGTTTCAGAAGAAGAATCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGA</canonical_amplicon>
		<polymorphic_amplicon>AAAATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCRTTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37075</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>688215</contig_pos>
        <strand>+</strand>
        <context>GATCRTTTTC[A/T]GGCATRGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTC</left_flank>
        <right_flank>GGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAA</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGACGGAAAGGAACCGTGTCCATCAACGAGGTCGACGACAACGACGTGCCAGGAGAGAACTGCTCACCGCTTTATTCAATATGATCTCGGATAGTCAGGCATAGGGCATTTCAAATAGTTATTGTAGATGATTTGATCATTGCTTCTATTTTTATTTTAACCTATTTATTTCTAACACTCTTTTTATGTTCATCTTTTGTCTTTAACTTTTTGTTTAAACCTTACTAATATATATTTCTTATATAAATCATATTTGAAAAAGCTGTGTTCTGTTCAAACTGTTGACAAAAAATGATATGACTCCTCGTAGAGCCCTGGGTATGGAGGAGTCAAGCTTGATAGGAAAGAAACTACCCAAAAGTTACAGATTTCGAAAACTATTCTTTTGTAGTAAAAAGAACCGATACTCATAAATCAGATTTATTTCAAGAAGCTTTAAAAATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAACAGTCGATATTATGAAAAACCAATAAAAAAAGTTAATTTTTGGTTTCAGAGTCTGCGGATTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTTGATTGGAGCAGCAAAAGCAGAGATAGCAAGGGAGACGAAAAGGAAGTAGAATAGGTTGAACATATTCAAGTTTTGATAGTTTTCAATTGAAGATCCAAACCTTTTATACTAGAACTTCGTATTTTGATTTTCATGCTGACTCAGGCCGCTTTAAAATATAAAATAACAAAAATCGTATTTAGTTCCCCTATTTTAGTGAGGTCATC</canonical>
            <polymorphic>GAGGACGGAAAGGAACCGTGTCCATCAACGAGGTCGACGACAACGACGTGCCAGGAGAGAACTGCTCACCGCTTTATTCAATATGATCTCGGATAGTCAGGCATAGGGCATTTCAAATAGTTATTGTAGATGATTTGATCATTGCTTCTATTTTTATTTTAACCTATTTATTTCTAACACTCTTTTTATGTTCATCTTTTGTCTTTAACTTTTTGTTTAAACCTTACTAATATATATTTCTTATATAAATCATATTTGAAAAAGCTGTGTTCTGTTCAAACTGTTGACAAAAAATGATATGACTCCTCGTAGAGCCCTGGGTATGGAGGAGTCAAGCTTGATAGGAAAGAAACTACCCAAAAGTTACAGATTTCGAAAACTATTCTTTTGTAGTAAAAAGAACCGATACTCATAAATCAGATTTATTTCAAGAAGCTTTAAAAATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCWGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAACAGTCGATATTATGAAAAACCAATAAAAAAAGTTAATTTTTGGTTTCAGAGTCTGCGGATTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTTGATTGGAGCAGCAAAAGCAGAGATAGCAAGGGAGACGAAAAGGAAGTAGAATAGGTTGAACATATTCAAGTTTTGATAGTTTTCAATTGAAGATCCAAACCTTTTATACTAGAACTTCGTATTTTGATTTTCATGCTGACTCAGGCCGCTTTAAAATATAAAATAACAAAAATCGTATTTAGTTCCCCTATTTTAGTGAGGTCATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTAAGCGAGTCCATATTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCGTTTCAGAAGAAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAA</canonical_amplicon>
		<polymorphic_amplicon>AATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCWGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37076</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>688221</contig_pos>
        <strand>+</strand>
        <context>TTTCWGGCAT[A/G]GATTTRATRA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCAT</left_flank>
        <right_flank>GATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAAAGGAACCGTGTCCATCAACGAGGTCGACGACAACGACGTGCCAGGAGAGAACTGCTCACCGCTTTATTCAATATGATCTCGGATAGTCAGGCATAGGGCATTTCAAATAGTTATTGTAGATGATTTGATCATTGCTTCTATTTTTATTTTAACCTATTTATTTCTAACACTCTTTTTATGTTCATCTTTTGTCTTTAACTTTTTGTTTAAACCTTACTAATATATATTTCTTATATAAATCATATTTGAAAAAGCTGTGTTCTGTTCAAACTGTTGACAAAAAATGATATGACTCCTCGTAGAGCCCTGGGTATGGAGGAGTCAAGCTTGATAGGAAAGAAACTACCCAAAAGTTACAGATTTCGAAAACTATTCTTTTGTAGTAAAAAGAACCGATACTCATAAATCAGATTTATTTCAAGAAGCTTTAAAAATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAACAGTCGATATTATGAAAAACCAATAAAAAAAGTTAATTTTTGGTTTCAGAGTCTGCGGATTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTTGATTGGAGCAGCAAAAGCAGAGATAGCAAGGGAGACGAAAAGGAAGTAGAATAGGTTGAACATATTCAAGTTTTGATAGTTTTCAATTGAAGATCCAAACCTTTTATACTAGAACTTCGTATTTTGATTTTCATGCTGACTCAGGCCGCTTTAAAATATAAAATAACAAAAATCGTATTTAGTTCCCCTATTTTAGTGAGGTCATCAAACTA</canonical>
            <polymorphic>GGAAAGGAACCGTGTCCATCAACGAGGTCGACGACAACGACGTGCCAGGAGAGAACTGCTCACCGCTTTATTCAATATGATCTCGGATAGTCAGGCATAGGGCATTTCAAATAGTTATTGTAGATGATTTGATCATTGCTTCTATTTTTATTTTAACCTATTTATTTCTAACACTCTTTTTATGTTCATCTTTTGTCTTTAACTTTTTGTTTAAACCTTACTAATATATATTTCTTATATAAATCATATTTGAAAAAGCTGTGTTCTGTTCAAACTGTTGACAAAAAATGATATGACTCCTCGTAGAGCCCTGGGTATGGAGGAGTCAAGCTTGATAGGAAAGAAACTACCCAAAAGTTACAGATTTCGAAAACTATTCTTTTGTAGTAAAAAGAACCGATACTCATAAATCAGATTTATTTCAAGAAGCTTTAAAAATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATRGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAACAGTCGATATTATGAAAAACCAATAAAAAAAGTTAATTTTTGGTTTCAGAGTCTGCGGATTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTTGATTGGAGCAGCAAAAGCAGAGATAGCAAGGGAGACGAAAAGGAAGTAGAATAGGTTGAACATATTCAAGTTTTGATAGTTTTCAATTGAAGATCCAAACCTTTTATACTAGAACTTCGTATTTTGATTTTCATGCTGACTCAGGCCGCTTTAAAATATAAAATAACAAAAATCGTATTTAGTTCCCCTATTTTAGTGAGGTCATCAAACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>497 423 80</canonical_bands>
                <polymorphic_bands>920 80</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTAAGCGAGTCCATATTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCGTTTCAGAAGAAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAA</canonical_amplicon>
		<polymorphic_amplicon>AATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATRGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37077</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>688227</contig_pos>
        <strand>+</strand>
        <context>GCATRGATTT[A/G]ATRAAGTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATGGATTT</left_flank>
        <right_flank>ATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGC</right_flank>
        <qual_score>130</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACCGTGTCCATCAACGAGGTCGACGACAACGACGTGCCAGGAGAGAACTGCTCACCGCTTTATTCAATATGATCTCGGATAGTCAGGCATAGGGCATTTCAAATAGTTATTGTAGATGATTTGATCATTGCTTCTATTTTTATTTTAACCTATTTATTTCTAACACTCTTTTTATGTTCATCTTTTGTCTTTAACTTTTTGTTTAAACCTTACTAATATATATTTCTTATATAAATCATATTTGAAAAAGCTGTGTTCTGTTCAAACTGTTGACAAAAAATGATATGACTCCTCGTAGAGCCCTGGGTATGGAGGAGTCAAGCTTGATAGGAAAGAAACTACCCAAAAGTTACAGATTTCGAAAACTATTCTTTTGTAGTAAAAAGAACCGATACTCATAAATCAGATTTATTTCAAGAAGCTTTAAAAATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAACAGTCGATATTATGAAAAACCAATAAAAAAAGTTAATTTTTGGTTTCAGAGTCTGCGGATTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTTGATTGGAGCAGCAAAAGCAGAGATAGCAAGGGAGACGAAAAGGAAGTAGAATAGGTTGAACATATTCAAGTTTTGATAGTTTTCAATTGAAGATCCAAACCTTTTATACTAGAACTTCGTATTTTGATTTTCATGCTGACTCAGGCCGCTTTAAAATATAAAATAACAAAAATCGTATTTAGTTCCCCTATTTTAGTGAGGTCATCAAACTATGAAAT</canonical>
            <polymorphic>GAACCGTGTCCATCAACGAGGTCGACGACAACGACGTGCCAGGAGAGAACTGCTCACCGCTTTATTCAATATGATCTCGGATAGTCAGGCATAGGGCATTTCAAATAGTTATTGTAGATGATTTGATCATTGCTTCTATTTTTATTTTAACCTATTTATTTCTAACACTCTTTTTATGTTCATCTTTTGTCTTTAACTTTTTGTTTAAACCTTACTAATATATATTTCTTATATAAATCATATTTGAAAAAGCTGTGTTCTGTTCAAACTGTTGACAAAAAATGATATGACTCCTCGTAGAGCCCTGGGTATGGAGGAGTCAAGCTTGATAGGAAAGAAACTACCCAAAAGTTACAGATTTCGAAAACTATTCTTTTGTAGTAAAAAGAACCGATACTCATAAATCAGATTTATTTCAAGAAGCTTTAAAAATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATGGATTTRATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAACAGTCGATATTATGAAAAACCAATAAAAAAAGTTAATTTTTGGTTTCAGAGTCTGCGGATTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTTGATTGGAGCAGCAAAAGCAGAGATAGCAAGGGAGACGAAAAGGAAGTAGAATAGGTTGAACATATTCAAGTTTTGATAGTTTTCAATTGAAGATCCAAACCTTTTATACTAGAACTTCGTATTTTGATTTTCATGCTGACTCAGGCCGCTTTAAAATATAAAATAACAAAAATCGTATTTAGTTCCCCTATTTTAGTGAGGTCATCAAACTATGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTAAGCGAGTCCATATTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCGTTTCAGAAGAAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAA</canonical_amplicon>
		<polymorphic_amplicon>AATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATGGATTTRATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37078</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>688230</contig_pos>
        <strand>+</strand>
        <context>TRGATTTRAT[A/G]AAGTTCTGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATGGATTTGAT</left_flank>
        <right_flank>AAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGTGTCCATCAACGAGGTCGACGACAACGACGTGCCAGGAGAGAACTGCTCACCGCTTTATTCAATATGATCTCGGATAGTCAGGCATAGGGCATTTCAAATAGTTATTGTAGATGATTTGATCATTGCTTCTATTTTTATTTTAACCTATTTATTTCTAACACTCTTTTTATGTTCATCTTTTGTCTTTAACTTTTTGTTTAAACCTTACTAATATATATTTCTTATATAAATCATATTTGAAAAAGCTGTGTTCTGTTCAAACTGTTGACAAAAAATGATATGACTCCTCGTAGAGCCCTGGGTATGGAGGAGTCAAGCTTGATAGGAAAGAAACTACCCAAAAGTTACAGATTTCGAAAACTATTCTTTTGTAGTAAAAAGAACCGATACTCATAAATCAGATTTATTTCAAGAAGCTTTAAAAATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAACAGTCGATATTATGAAAAACCAATAAAAAAAGTTAATTTTTGGTTTCAGAGTCTGCGGATTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTTGATTGGAGCAGCAAAAGCAGAGATAGCAAGGGAGACGAAAAGGAAGTAGAATAGGTTGAACATATTCAAGTTTTGATAGTTTTCAATTGAAGATCCAAACCTTTTATACTAGAACTTCGTATTTTGATTTTCATGCTGACTCAGGCCGCTTTAAAATATAAAATAACAAAAATCGTATTTAGTTCCCCTATTTTAGTGAGGTCATCAAACTATGAAATATG</canonical>
            <polymorphic>CCGTGTCCATCAACGAGGTCGACGACAACGACGTGCCAGGAGAGAACTGCTCACCGCTTTATTCAATATGATCTCGGATAGTCAGGCATAGGGCATTTCAAATAGTTATTGTAGATGATTTGATCATTGCTTCTATTTTTATTTTAACCTATTTATTTCTAACACTCTTTTTATGTTCATCTTTTGTCTTTAACTTTTTGTTTAAACCTTACTAATATATATTTCTTATATAAATCATATTTGAAAAAGCTGTGTTCTGTTCAAACTGTTGACAAAAAATGATATGACTCCTCGTAGAGCCCTGGGTATGGAGGAGTCAAGCTTGATAGGAAAGAAACTACCCAAAAGTTACAGATTTCGAAAACTATTCTTTTGTAGTAAAAAGAACCGATACTCATAAATCAGATTTATTTCAAGAAGCTTTAAAAATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATGGATTTGATRAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAACAGTCGATATTATGAAAAACCAATAAAAAAAGTTAATTTTTGGTTTCAGAGTCTGCGGATTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTTGATTGGAGCAGCAAAAGCAGAGATAGCAAGGGAGACGAAAAGGAAGTAGAATAGGTTGAACATATTCAAGTTTTGATAGTTTTCAATTGAAGATCCAAACCTTTTATACTAGAACTTCGTATTTTGATTTTCATGCTGACTCAGGCCGCTTTAAAATATAAAATAACAAAAATCGTATTTAGTTCCCCTATTTTAGTGAGGTCATCAAACTATGAAATATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTAAGCGAGTCCATATTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCGTTTCAGAAGAAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAA</canonical_amplicon>
		<polymorphic_amplicon>AATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATGGATTTGATRAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37079</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>688323</contig_pos>
        <strand>+</strand>
        <context>TGAATCTTTT[G/T]GTCAATGCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTT</left_flank>
        <right_flank>GTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTCAAATAGTTATTGTAGATGATTTGATCATTGCTTCTATTTTTATTTTAACCTATTTATTTCTAACACTCTTTTTATGTTCATCTTTTGTCTTTAACTTTTTGTTTAAACCTTACTAATATATATTTCTTATATAAATCATATTTGAAAAAGCTGTGTTCTGTTCAAACTGTTGACAAAAAATGATATGACTCCTCGTAGAGCCCTGGGTATGGAGGAGTCAAGCTTGATAGGAAAGAAACTACCCAAAAGTTACAGATTTCGAAAACTATTCTTTTGTAGTAAAAAGAACCGATACTCATAAATCAGATTTATTTCAAGAAGCTTTAAAAATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAACAGTCGATATTATGAAAAACCAATAAAAAAAGTTAATTTTTGGTTTCAGAGTCTGCGGATTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTTGATTGGAGCAGCAAAAGCAGAGATAGCAAGGGAGACGAAAAGGAAGTAGAATAGGTTGAACATATTCAAGTTTTGATAGTTTTCAATTGAAGATCCAAACCTTTTATACTAGAACTTCGTATTTTGATTTTCATGCTGACTCAGGCCGCTTTAAAATATAAAATAACAAAAATCGTATTTAGTTCCCCTATTTTAGTGAGGTCATCAAACTATGAAATATGTCTGTGTCTCTTCCCTATTTTTGAAAAAATAGTTGTAACATTTTGTCCGTAGAGTTGGTTTTCCTCTGATTCATAGATAGAGATATGTTTTGG</canonical>
            <polymorphic>CATTTCAAATAGTTATTGTAGATGATTTGATCATTGCTTCTATTTTTATTTTAACCTATTTATTTCTAACACTCTTTTTATGTTCATCTTTTGTCTTTAACTTTTTGTTTAAACCTTACTAATATATATTTCTTATATAAATCATATTTGAAAAAGCTGTGTTCTGTTCAAACTGTTGACAAAAAATGATATGACTCCTCGTAGAGCCCTGGGTATGGAGGAGTCAAGCTTGATAGGAAAGAAACTACCCAAAAGTTACAGATTTCGAAAACTATTCTTTTGTAGTAAAAAGAACCGATACTCATAAATCAGATTTATTTCAAGAAGCTTTAAAAATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTKGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAACAGTCGATATTATGAAAAACCAATAAAAAAAGTTAATTTTTGGTTTCAGAGTCTGCGGATTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTTGATTGGAGCAGCAAAAGCAGAGATAGCAAGGGAGACGAAAAGGAAGTAGAATAGGTTGAACATATTCAAGTTTTGATAGTTTTCAATTGAAGATCCAAACCTTTTATACTAGAACTTCGTATTTTGATTTTCATGCTGACTCAGGCCGCTTTAAAATATAAAATAACAAAAATCGTATTTAGTTCCCCTATTTTAGTGAGGTCATCAAACTATGAAATATGTCTGTGTCTCTTCCCTATTTTTGAAAAAATAGTTGTAACATTTTGTCCGTAGAGTTGGTTTTCCTCTGATTCATAGATAGAGATATGTTTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTAAGCGAGTCCATATTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCGTTTCAGAAGAAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAA</canonical_amplicon>
		<polymorphic_amplicon>AATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTKGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37080</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>688356</contig_pos>
        <strand>+</strand>
        <context>TACTTGCTTG[A/G]GTCATCCCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTG</left_flank>
        <right_flank>GTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCTTCTATTTTTATTTTAACCTATTTATTTCTAACACTCTTTTTATGTTCATCTTTTGTCTTTAACTTTTTGTTTAAACCTTACTAATATATATTTCTTATATAAATCATATTTGAAAAAGCTGTGTTCTGTTCAAACTGTTGACAAAAAATGATATGACTCCTCGTAGAGCCCTGGGTATGGAGGAGTCAAGCTTGATAGGAAAGAAACTACCCAAAAGTTACAGATTTCGAAAACTATTCTTTTGTAGTAAAAAGAACCGATACTCATAAATCAGATTTATTTCAAGAAGCTTTAAAAATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAACAGTCGATATTATGAAAAACCAATAAAAAAAGTTAATTTTTGGTTTCAGAGTCTGCGGATTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTTGATTGGAGCAGCAAAAGCAGAGATAGCAAGGGAGACGAAAAGGAAGTAGAATAGGTTGAACATATTCAAGTTTTGATAGTTTTCAATTGAAGATCCAAACCTTTTATACTAGAACTTCGTATTTTGATTTTCATGCTGACTCAGGCCGCTTTAAAATATAAAATAACAAAAATCGTATTTAGTTCCCCTATTTTAGTGAGGTCATCAAACTATGAAATATGTCTGTGTCTCTTCCCTATTTTTGAAAAAATAGTTGTAACATTTTGTCCGTAGAGTTGGTTTTCCTCTGATTCATAGATAGAGATATGTTTTGGAAAACTCACTGAAGTTTTTTATGAGAGGCACAA</canonical>
            <polymorphic>TTGCTTCTATTTTTATTTTAACCTATTTATTTCTAACACTCTTTTTATGTTCATCTTTTGTCTTTAACTTTTTGTTTAAACCTTACTAATATATATTTCTTATATAAATCATATTTGAAAAAGCTGTGTTCTGTTCAAACTGTTGACAAAAAATGATATGACTCCTCGTAGAGCCCTGGGTATGGAGGAGTCAAGCTTGATAGGAAAGAAACTACCCAAAAGTTACAGATTTCGAAAACTATTCTTTTGTAGTAAAAAGAACCGATACTCATAAATCAGATTTATTTCAAGAAGCTTTAAAAATTTAAGCGAGTCCATATTTCTTCAAATAGTTGTTGTAGATGGTCTGATCATTTTCAGGCATGGATTTGATGAAGTTCTGAGCATCAGTTGTGTATTCGGCAATGAATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGRGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAACAGTCGATATTATGAAAAACCAATAAAAAAAGTTAATTTTTGGTTTCAGAGTCTGCGGATTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTTGATTGGAGCAGCAAAAGCAGAGATAGCAAGGGAGACGAAAAGGAAGTAGAATAGGTTGAACATATTCAAGTTTTGATAGTTTTCAATTGAAGATCCAAACCTTTTATACTAGAACTTCGTATTTTGATTTTCATGCTGACTCAGGCCGCTTTAAAATATAAAATAACAAAAATCGTATTTAGTTCCCCTATTTTAGTGAGGTCATCAAACTATGAAATATGTCTGTGTCTCTTCCCTATTTTTGAAAAAATAGTTGTAACATTTTGTCCGTAGAGTTGGTTTTCCTCTGATTCATAGATAGAGATATGTTTTGGAAAACTCACTGAAGTTTTTTATGAGAGGCACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>190 160 151 135 123 70 58 41 32 28 12</canonical_bands>
                <polymorphic_bands>190 160 151 135 123 73 70 58 28 12</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTATCAGTTGCTTCCTTGTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTATCCAACTGGTCAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGAGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAACAGTCGATATTATGAAAAACCAATAAAAAAAGTTAATTTTTGGTTTCAGAGTCTGCGGATTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTT</canonical_amplicon>
		<polymorphic_amplicon>AATTTATCAGTTGCTTCCTTGTTGGATTGAACCAATGGGAATCCAGAAGTGAATCTTTTGGTCAATGCATCCAATCCGTCAATACTTGCTTGRGTCATCCCAGCTGCAGTCAACTCGGCTTTTGATTCTTCTTCTGAAACGAAAACAGTCGATATTATGAAAAACCAATAAAAAAAGTTAATTTTTGGTTTCAGAGTCTGCGGATTTTTTTGAAAAAGCACTGAAAAACTGACCAGTTGGATACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37081</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>731292</contig_pos>
        <strand>+</strand>
        <context>CCGTTTAGTT[A/T]AGRTTAGCGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGGGCCGTCAATCCTTAGCTATTCATCCTATTCTAGCGGACCGTTTAGTT</left_flank>
        <right_flank>AGATTAGCGCTGCGGGCAGTCACTCCTTAGCGGTTCTTGTTTTTCATTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGGGTAGTCAATCCGGCTCTTTCCGGGAAGAAGGGTCCCAAAATGGGACCGTCGGTCCCATCATCGGACCACCGATCCCAAGAATTGCGACAACGGTCTCTTTGCTTTGTTCCGATAACGGTCCCAATATCCTGGGAACGGTCCCAAGAGTACGACAACGGTCCCAACCAGGCTTAATCTGGAAACCCTATTTCTGAAATACAGAAAAAACGGAACGGTCTTTAAAGAATCCAGTGGAAAATTTAACATTTTACTTATACTAGGAGATTTTAGTACTTTTTGACAGGAATTTTTCACAGAATATTACGTTTTTTGTATTGTAGGCCAAAACGCCTTTTTTCCGGCACTGATGTGAACAAGGCGTTTCAGCCTAAACCTATAATTATAAACCAACTTATCAGAACAATGGGACCGTTGTCGCAATTCGTTGGGACCGACGGTCCGATGATGGGCCGTCAATCCTTAGCTATTCATCCTATTCTAGCGGACCGTTTAGTTAAGATTAGCGCTGCGGGCAGTCACTCCTTAGCGGTTCTTGTTTTTCATTACGACTGCAGTATTGCAAAGTTTACCTTGCCCACACAAACGCACCAAACTTCGAATACTGACTCTTGTGGTAGTTCAATTTGTTAAATTGCTATTCAAAGCCGGACCAGGAAGTTTCGGTGTTTGTTGTGTGAATTATAATTTGTTTCTCAATGTTTCTTTGCACTTCTCGAAACGAATGTTCTTTTTTCTGGCACACTCTCATGGAAAAAATAATTTTCACAAAAAAAAACTTTATTATTGTTATGCATTGCGGAAAAACCAAAACAATTATTGCTGCTTGCTTGGGGTTGTCCAAGACAGATAATTCGGACTGACGAATAGCCATGCGACCAGGTTGACTCCGTCGTCACGTTCTATCATTGCTCCGCCGTTCTCAGTGATGACCGATCTTAAAATATTGAAATAGTTTTAAATGGGAAAATATGAACAACTCACTATCAGACATGGCTG</canonical>
            <polymorphic>GCGGGTAGTCAATCCGGCTCTTTCCGGGAAGAAGGGTCCCAAAATGGGACCGTCGGTCCCATCATCGGACCACCGATCCCAAGAATTGCGACAACGGTCTCTTTGCTTTGTTCCGATAACGGTCCCAATATCCTGGGAACGGTCCCAAGAGTACGACAACGGTCCCAACCAGGCTTAATCTGGAAACCCTATTTCTGAAATACAGAAAAAACGGAACGGTCTTTAAAGAATCCAGTGGAAAATTTAACATTTTACTTATACTAGGAGATTTTAGTACTTTTTGACAGGAATTTTTCACAGAATATTACGTTTTTTGTATTGTAGGCCAAAACGCCTTTTTTCCGGCACTGATGTGAACAAGGCGTTTCAGCCTAAACCTATAATTATAAACCAACTTATCAGAACAATGGGACCGTTGTCGCAATTCGTTGGGACCGACGGTCCGATGATGGGCCGTCAATCCTTAGCTATTCATCCTATTCTAGCGGACCGTTTAGTTWAGATTAGCGCTGCGGGCAGTCACTCCTTAGCGGTTCTTGTTTTTCATTACGACTGCAGTATTGCAAAGTTTACCTTGCCCACACAAACGCACCAAACTTCGAATACTGACTCTTGTGGTAGTTCAATTTGTTAAATTGCTATTCAAAGCCGGACCAGGAAGTTTCGGTGTTTGTTGTGTGAATTATAATTTGTTTCTCAATGTTTCTTTGCACTTCTCGAAACGAATGTTCTTTTTTCTGGCACACTCTCATGGAAAAAATAATTTTCACAAAAAAAAACTTTATTATTGTTATGCATTGCGGAAAAACCAAAACAATTATTGCTGCTTGCTTGGGGTTGTCCAAGACAGATAATTCGGACTGACGAATAGCCATGCGACCAGGTTGACTCCGTCGTCACGTTCTATCATTGCTCCGCCGTTCTCAGTGATGACCGATCTTAAAATATTGAAATAGTTTTAAATGGGAAAATATGAACAACTCACTATCAGACATGGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>309 254 175 133 48 41 21 19</canonical_bands>
                <polymorphic_bands>387 309 175 48 41 21 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACCATTCCGTCTAGGTTTG</pcr_primer_p1>
		<pcr_primer_p2>GTCGTAATGAAAAACAAGAACC</pcr_primer_p2>
		<pcr_amplicon_size>578</pcr_amplicon_size>
		<canonical_amplicon>TAAGATTAGCGCTGCGGGCAGTCACTCCTTAGCGGTTCTTGTTTTTCATTACGAC</canonical_amplicon>
		<polymorphic_amplicon>TWAGATTAGCGCTGCGGGCAGTCACTCCTTAGCGGTTCTTGTTTTTCATTACGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37082</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>731295</contig_pos>
        <strand>+</strand>
        <context>TTTAGTTWAG[A/G]TTAGCGCTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCGTCAATCCTTAGCTATTCATCCTATTCTAGCGGACCGTTTAGTTAAG</left_flank>
        <right_flank>TTAGCGCTGCGGGCAGTCACTCCTTAGCGGTTCTTGTTTTTCATTACGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTAGTCAATCCGGCTCTTTCCGGGAAGAAGGGTCCCAAAATGGGACCGTCGGTCCCATCATCGGACCACCGATCCCAAGAATTGCGACAACGGTCTCTTTGCTTTGTTCCGATAACGGTCCCAATATCCTGGGAACGGTCCCAAGAGTACGACAACGGTCCCAACCAGGCTTAATCTGGAAACCCTATTTCTGAAATACAGAAAAAACGGAACGGTCTTTAAAGAATCCAGTGGAAAATTTAACATTTTACTTATACTAGGAGATTTTAGTACTTTTTGACAGGAATTTTTCACAGAATATTACGTTTTTTGTATTGTAGGCCAAAACGCCTTTTTTCCGGCACTGATGTGAACAAGGCGTTTCAGCCTAAACCTATAATTATAAACCAACTTATCAGAACAATGGGACCGTTGTCGCAATTCGTTGGGACCGACGGTCCGATGATGGGCCGTCAATCCTTAGCTATTCATCCTATTCTAGCGGACCGTTTAGTTAAGATTAGCGCTGCGGGCAGTCACTCCTTAGCGGTTCTTGTTTTTCATTACGACTGCAGTATTGCAAAGTTTACCTTGCCCACACAAACGCACCAAACTTCGAATACTGACTCTTGTGGTAGTTCAATTTGTTAAATTGCTATTCAAAGCCGGACCAGGAAGTTTCGGTGTTTGTTGTGTGAATTATAATTTGTTTCTCAATGTTTCTTTGCACTTCTCGAAACGAATGTTCTTTTTTCTGGCACACTCTCATGGAAAAAATAATTTTCACAAAAAAAAACTTTATTATTGTTATGCATTGCGGAAAAACCAAAACAATTATTGCTGCTTGCTTGGGGTTGTCCAAGACAGATAATTCGGACTGACGAATAGCCATGCGACCAGGTTGACTCCGTCGTCACGTTCTATCATTGCTCCGCCGTTCTCAGTGATGACCGATCTTAAAATATTGAAATAGTTTTAAATGGGAAAATATGAACAACTCACTATCAGACATGGCTGAAA</canonical>
            <polymorphic>GGTAGTCAATCCGGCTCTTTCCGGGAAGAAGGGTCCCAAAATGGGACCGTCGGTCCCATCATCGGACCACCGATCCCAAGAATTGCGACAACGGTCTCTTTGCTTTGTTCCGATAACGGTCCCAATATCCTGGGAACGGTCCCAAGAGTACGACAACGGTCCCAACCAGGCTTAATCTGGAAACCCTATTTCTGAAATACAGAAAAAACGGAACGGTCTTTAAAGAATCCAGTGGAAAATTTAACATTTTACTTATACTAGGAGATTTTAGTACTTTTTGACAGGAATTTTTCACAGAATATTACGTTTTTTGTATTGTAGGCCAAAACGCCTTTTTTCCGGCACTGATGTGAACAAGGCGTTTCAGCCTAAACCTATAATTATAAACCAACTTATCAGAACAATGGGACCGTTGTCGCAATTCGTTGGGACCGACGGTCCGATGATGGGCCGTCAATCCTTAGCTATTCATCCTATTCTAGCGGACCGTTTAGTTAAGRTTAGCGCTGCGGGCAGTCACTCCTTAGCGGTTCTTGTTTTTCATTACGACTGCAGTATTGCAAAGTTTACCTTGCCCACACAAACGCACCAAACTTCGAATACTGACTCTTGTGGTAGTTCAATTTGTTAAATTGCTATTCAAAGCCGGACCAGGAAGTTTCGGTGTTTGTTGTGTGAATTATAATTTGTTTCTCAATGTTTCTTTGCACTTCTCGAAACGAATGTTCTTTTTTCTGGCACACTCTCATGGAAAAAATAATTTTCACAAAAAAAAACTTTATTATTGTTATGCATTGCGGAAAAACCAAAACAATTATTGCTGCTTGCTTGGGGTTGTCCAAGACAGATAATTCGGACTGACGAATAGCCATGCGACCAGGTTGACTCCGTCGTCACGTTCTATCATTGCTCCGCCGTTCTCAGTGATGACCGATCTTAAAATATTGAAATAGTTTTAAATGGGAAAATATGAACAACTCACTATCAGACATGGCTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACCATTCCGTCTAGGTTTG</pcr_primer_p1>
		<pcr_primer_p2>GCAAGGTAAACTTTGCAATAC</pcr_primer_p2>
		<pcr_amplicon_size>603</pcr_amplicon_size>
		<canonical_amplicon>GATTAGCGCTGCGGGCAGTCACTCCTTAGCGGTTCTTGTTTTTCATTACGACTGCAGTATTGCAAAGTTTACCTTGC</canonical_amplicon>
		<polymorphic_amplicon>GRTTAGCGCTGCGGGCAGTCACTCCTTAGCGGTTCTTGTTTTTCATTACGACTGCAGTATTGCAAAGTTTACCTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37083</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>731347</contig_pos>
        <strand>+</strand>
        <context>CATTACGACT[A/G]CAGTATTGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGCGCTGCGGGCAGTCACTCCTTAGCGGTTCTTGTTTTTCATTACGACT</left_flank>
        <right_flank>CAGTATTGCAAAGTTTACCTTGCCCACACAAACGCACCAAACTTCGAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCCCATCATCGGACCACCGATCCCAAGAATTGCGACAACGGTCTCTTTGCTTTGTTCCGATAACGGTCCCAATATCCTGGGAACGGTCCCAAGAGTACGACAACGGTCCCAACCAGGCTTAATCTGGAAACCCTATTTCTGAAATACAGAAAAAACGGAACGGTCTTTAAAGAATCCAGTGGAAAATTTAACATTTTACTTATACTAGGAGATTTTAGTACTTTTTGACAGGAATTTTTCACAGAATATTACGTTTTTTGTATTGTAGGCCAAAACGCCTTTTTTCCGGCACTGATGTGAACAAGGCGTTTCAGCCTAAACCTATAATTATAAACCAACTTATCAGAACAATGGGACCGTTGTCGCAATTCGTTGGGACCGACGGTCCGATGATGGGCCGTCAATCCTTAGCTATTCATCCTATTCTAGCGGACCGTTTAGTTAAGATTAGCGCTGCGGGCAGTCACTCCTTAGCGGTTCTTGTTTTTCATTACGACTGCAGTATTGCAAAGTTTACCTTGCCCACACAAACGCACCAAACTTCGAATACTGACTCTTGTGGTAGTTCAATTTGTTAAATTGCTATTCAAAGCCGGACCAGGAAGTTTCGGTGTTTGTTGTGTGAATTATAATTTGTTTCTCAATGTTTCTTTGCACTTCTCGAAACGAATGTTCTTTTTTCTGGCACACTCTCATGGAAAAAATAATTTTCACAAAAAAAAACTTTATTATTGTTATGCATTGCGGAAAAACCAAAACAATTATTGCTGCTTGCTTGGGGTTGTCCAAGACAGATAATTCGGACTGACGAATAGCCATGCGACCAGGTTGACTCCGTCGTCACGTTCTATCATTGCTCCGCCGTTCTCAGTGATGACCGATCTTAAAATATTGAAATAGTTTTAAATGGGAAAATATGAACAACTCACTATCAGACATGGCTGAAATCGCTTTTTTGTAGAATCTTCAGATTCATCGTCCTCCTCCGAAAATTCTTTA</canonical>
            <polymorphic>GTCCCATCATCGGACCACCGATCCCAAGAATTGCGACAACGGTCTCTTTGCTTTGTTCCGATAACGGTCCCAATATCCTGGGAACGGTCCCAAGAGTACGACAACGGTCCCAACCAGGCTTAATCTGGAAACCCTATTTCTGAAATACAGAAAAAACGGAACGGTCTTTAAAGAATCCAGTGGAAAATTTAACATTTTACTTATACTAGGAGATTTTAGTACTTTTTGACAGGAATTTTTCACAGAATATTACGTTTTTTGTATTGTAGGCCAAAACGCCTTTTTTCCGGCACTGATGTGAACAAGGCGTTTCAGCCTAAACCTATAATTATAAACCAACTTATCAGAACAATGGGACCGTTGTCGCAATTCGTTGGGACCGACGGTCCGATGATGGGCCGTCAATCCTTAGCTATTCATCCTATTCTAGCGGACCGTTTAGTTAAGATTAGCGCTGCGGGCAGTCACTCCTTAGCGGTTCTTGTTTTTCATTACGACTRCAGTATTGCAAAGTTTACCTTGCCCACACAAACGCACCAAACTTCGAATACTGACTCTTGTGGTAGTTCAATTTGTTAAATTGCTATTCAAAGCCGGACCAGGAAGTTTCGGTGTTTGTTGTGTGAATTATAATTTGTTTCTCAATGTTTCTTTGCACTTCTCGAAACGAATGTTCTTTTTTCTGGCACACTCTCATGGAAAAAATAATTTTCACAAAAAAAAACTTTATTATTGTTATGCATTGCGGAAAAACCAAAACAATTATTGCTGCTTGCTTGGGGTTGTCCAAGACAGATAATTCGGACTGACGAATAGCCATGCGACCAGGTTGACTCCGTCGTCACGTTCTATCATTGCTCCGCCGTTCTCAGTGATGACCGATCTTAAAATATTGAAATAGTTTTAAATGGGAAAATATGAACAACTCACTATCAGACATGGCTGAAATCGCTTTTTTGTAGAATCTTCAGATTCATCGTCCTCCTCCGAAAATTCTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTGCAG</site>
                <isoschizomers>
                    <enzyme>BloHII</enzyme>
                    <enzyme>BstMAI</enzyme>
                    <enzyme>PstI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 260 147 85 8</canonical_bands>
                <polymorphic_bands>508 260 147 85</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTCTAGCGGACCGTTTAGT</pcr_primer_p1>
		<pcr_primer_p2>CAAAGAAACATTGAGAAACAAAT</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>TATTCTAGCGGACCGTTTAGTTAAGATTAGCGCTGCGGGCAGTCACTCCTTAGCGGTTCTTGTTTTTCATTACGACTGCAGTATTGCAAAGTTTACCTTGCCCACACAAACGCACCAAACTTCGAATACTGACTCTTGTGGTAGTTCAATTTGTTAAATTGCTATTCAAAGCCGGACCAGGAAGTTTCGGTGTTTGTTGTGTGAATTATAATTTGTTTCTCAATGTTTCTTTG</canonical_amplicon>
		<polymorphic_amplicon>TATTCTAGCGGACCGTTTAGTTAAGATTAGCGCTGCGGGCAGTCACTCCTTAGCGGTTCTTGTTTTTCATTACGACTRCAGTATTGCAAAGTTTACCTTGCCCACACAAACGCACCAAACTTCGAATACTGACTCTTGTGGTAGTTCAATTTGTTAAATTGCTATTCAAAGCCGGACCAGGAAGTTTCGGTGTTTGTTGTGTGAATTATAATTTGTTTCTCAATGTTTCTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37084</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>748133</contig_pos>
        <strand>-</strand>
        <context>TTCCTCCGTT[A/T]TCTCCTCCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCTCCTAAACCACCGTCGCTTCCTCCAACAACACCCCCAATTCCTCCGTT</left_flank>
        <right_flank>TCTCCTCCTCCGATAATTGATCCGAGATCAGGAAGAGCCGAAGCAAGGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTATTGTTCAGAATGTCGGACAATTGGTCGAATACTGGTTGAAGGTTGTTGAGGACTTTACTAATGGCAGCGAGAAGTTTGGAGACAAGTTCGGCGACGGTTGCCAAGAGTTGCTGAATTTCACATTTATCAAAAAATAGATCAGATTTCTGACTCACCTCAAGAACACCCTCCGGGAGCAGAGCATCGAGTCGGGAGAGGAGTTCACTGATTGGAAGATCTTCTCCAAGAAGATCAGTGATTTTTTGAATAGTTTCTTCAGGAAGATCTCCGAGGATATCAGTCAAAAATGATGGAATTTCAGTGATATTCCCGGGAATAGGTAATCCCAATCCACCTGGATTTCCACCAAGAACACTCAAAAGATTTTGAAGAACATCTTGGTTTCCTCCAAGAAGATCTCCCACAATTCCACCGATTCCTTCTCCATTTCCTCCTCCAATGATTCCTCCTAAACCACCGTCGCTTCCTCCAACAACACCCCCAATTCCTCCGTTTTCTCCTCCTCCGATAATTGATCCGAGATCAGGAAGAGCCGAAGCAAGGGCAAGGGAAGCAATGAGAGCAAAGGCAACTTTGGATGAACACAGACTGAAAAAGCTTTAAATATTTTTAAAAAAACTGATTTTAAAAACCAAATGAATGGAACAGGATGACTTTTCAGTGAATCGACGGTCCATTTTATACCTAGTGTAACAGGAAGATCTTTGTCAGAATCCAATATTTTCAAAACACAAATTTGATTTTTGAGCATTTTATTAACTTTATTCATACTAGAAACTTATTCAAAACAGATGATCTCCGAACACCAGACGGTCACTCTATCATCATTTTGTATCAGTTTCGAATTTACATAAAACAGTTGTCCAACTATCAATAGTAGAATCCTTCCAGATATTGAGTGTATTCTATCTCAAAAATGAGAAATCATTAAGCTAAAAGAACTGAAGTTTTTCTTACAATGAAACAGTGATTCTTCCTTACAGCTCTATTCATCG</canonical>
            <polymorphic>TCTTATTGTTCAGAATGTCGGACAATTGGTCGAATACTGGTTGAAGGTTGTTGAGGACTTTACTAATGGCAGCGAGAAGTTTGGAGACAAGTTCGGCGACGGTTGCCAAGAGTTGCTGAATTTCACATTTATCAAAAAATAGATCAGATTTCTGACTCACCTCAAGAACACCCTCCGGGAGCAGAGCATCGAGTCGGGAGAGGAGTTCACTGATTGGAAGATCTTCTCCAAGAAGATCAGTGATTTTTTGAATAGTTTCTTCAGGAAGATCTCCGAGGATATCAGTCAAAAATGATGGAATTTCAGTGATATTCCCGGGAATAGGTAATCCCAATCCACCTGGATTTCCACCAAGAACACTCAAAAGATTTTGAAGAACATCTTGGTTTCCTCCAAGAAGATCTCCCACAATTCCACCGATTCCTTCTCCATTTCCTCCTCCAATGATTCCTCCTAAACCACCGTCGCTTCCTCCAACAACACCCCCAATTCCTCCGTTWTCTCCTCCTCCGATAATTGATCCGAGATCAGGAAGAGCCGAAGCAAGGGCAAGGGAAGCAATGAGAGCAAAGGCAACTTTGGATGAACACAGACTGAAAAAGCTTTAAATATTTTTAAAAAAACTGATTTTAAAAACCAAATGAATGGAACAGGATGACTTTTCAGTGAATCGACGGTCCATTTTATACCTAGTGTAACAGGAAGATCTTTGTCAGAATCCAATATTTTCAAAACACAAATTTGATTTTTGAGCATTTTATTAACTTTATTCATACTAGAAACTTATTCAAAACAGATGATCTCCGAACACCAGACGGTCACTCTATCATCATTTTGTATCAGTTTCGAATTTACATAAAACAGTTGTCCAACTATCAATAGTAGAATCCTTCCAGATATTGAGTGTATTCTATCTCAAAAATGAGAAATCATTAAGCTAAAAGAACTGAAGTTTTTCTTACAATGAAACAGTGATTCTTCCTTACAGCTCTATTCATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAAGAACATCTTGGTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTAAAGCTTTTTCAGTCTGTGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAAGAACATCTTGGTTTCCTCCAAGAAGATCTCCCACAATTCCACCGATTCCTTCTCCATTTCCTCCTCCAATGATTCCTCCTAAACCACCGTCGCTTCCTCCAACAACACCCCCAATTCCTCCGTTTTCTCCTCCTCCGATAATTGATCCGAGATCAGGAAGAGCCGAAGCAAGGGCAAGGGAAGCAATGAGAGCAAAGGCAACTTTGGATGAACACAGACTGAAAAAGCTTTAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAAGAACATCTTGGTTTCCTCCAAGAAGATCTCCCACAATTCCACCGATTCCTTCTCCATTTCCTCCTCCAATGATTCCTCCTAAACCACCGTCGCTTCCTCCAACAACACCCCCAATTCCTCCGTTWTCTCCTCCTCCGATAATTGATCCGAGATCAGGAAGAGCCGAAGCAAGGGCAAGGGAAGCAATGAGAGCAAAGGCAACTTTGGATGAACACAGACTGAAAAAGCTTTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37085</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>748324</contig_pos>
        <strand>-</strand>
        <context>ATTTTATACC[A/C]AGTGTAACAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGAATGGAACAGGATGACTTTTCAGTGAATCGACGGTCCATTTTATACC</left_flank>
        <right_flank>AGTGTAACAGGAAGATCTTTGTCAGAATCCAATATTTTCAAAACACAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTCGGGAGAGGAGTTCACTGATTGGAAGATCTTCTCCAAGAAGATCAGTGATTTTTTGAATAGTTTCTTCAGGAAGATCTCCGAGGATATCAGTCAAAAATGATGGAATTTCAGTGATATTCCCGGGAATAGGTAATCCCAATCCACCTGGATTTCCACCAAGAACACTCAAAAGATTTTGAAGAACATCTTGGTTTCCTCCAAGAAGATCTCCCACAATTCCACCGATTCCTTCTCCATTTCCTCCTCCAATGATTCCTCCTAAACCACCGTCGCTTCCTCCAACAACACCCCCAATTCCTCCGTTTTCTCCTCCTCCGATAATTGATCCGAGATCAGGAAGAGCCGAAGCAAGGGCAAGGGAAGCAATGAGAGCAAAGGCAACTTTGGATGAACACAGACTGAAAAAGCTTTAAATATTTTTAAAAAAACTGATTTTAAAAACCAAATGAATGGAACAGGATGACTTTTCAGTGAATCGACGGTCCATTTTATACCTAGTGTAACAGGAAGATCTTTGTCAGAATCCAATATTTTCAAAACACAAATTTGATTTTTGAGCATTTTATTAACTTTATTCATACTAGAAACTTATTCAAAACAGATGATCTCCGAACACCAGACGGTCACTCTATCATCATTTTGTATCAGTTTCGAATTTACATAAAACAGTTGTCCAACTATCAATAGTAGAATCCTTCCAGATATTGAGTGTATTCTATCTCAAAAATGAGAAATCATTAAGCTAAAAGAACTGAAGTTTTTCTTACAATGAAACAGTGATTCTTCCTTACAGCTCTATTCATCGTATAAAGGGATCTGTGTCGTCTATGAAAATAGATATTTTCAAAACAAAGTGTCCATTTGAATAATCTGAATAAAAATAGTTATTTTAAGGATATAATCCGGTTGATGGTGTCTGAAACAAGAAACAATAACCGTATAAAAAGAACTTCAGATGGTGTGGATCGTATCTTTTCTCGTTTCTATTTTCTACAA</canonical>
            <polymorphic>AGTCGGGAGAGGAGTTCACTGATTGGAAGATCTTCTCCAAGAAGATCAGTGATTTTTTGAATAGTTTCTTCAGGAAGATCTCCGAGGATATCAGTCAAAAATGATGGAATTTCAGTGATATTCCCGGGAATAGGTAATCCCAATCCACCTGGATTTCCACCAAGAACACTCAAAAGATTTTGAAGAACATCTTGGTTTCCTCCAAGAAGATCTCCCACAATTCCACCGATTCCTTCTCCATTTCCTCCTCCAATGATTCCTCCTAAACCACCGTCGCTTCCTCCAACAACACCCCCAATTCCTCCGTTTTCTCCTCCTCCGATAATTGATCCGAGATCAGGAAGAGCCGAAGCAAGGGCAAGGGAAGCAATGAGAGCAAAGGCAACTTTGGATGAACACAGACTGAAAAAGCTTTAAATATTTTTAAAAAAACTGATTTTAAAAACCAAATGAATGGAACAGGATGACTTTTCAGTGAATCGACGGTCCATTTTATACCMAGTGTAACAGGAAGATCTTTGTCAGAATCCAATATTTTCAAAACACAAATTTGATTTTTGAGCATTTTATTAACTTTATTCATACTAGAAACTTATTCAAAACAGATGATCTCCGAACACCAGACGGTCACTCTATCATCATTTTGTATCAGTTTCGAATTTACATAAAACAGTTGTCCAACTATCAATAGTAGAATCCTTCCAGATATTGAGTGTATTCTATCTCAAAAATGAGAAATCATTAAGCTAAAAGAACTGAAGTTTTTCTTACAATGAAACAGTGATTCTTCCTTACAGCTCTATTCATCGTATAAAGGGATCTGTGTCGTCTATGAAAATAGATATTTTCAAAACAAAGTGTCCATTTGAATAATCTGAATAAAAATAGTTATTTTAAGGATATAATCCGGTTGATGGTGTCTGAAACAAGAAACAATAACCGTATAAAAAGAACTTCAGATGGTGTGGATCGTATCTTTTCTCGTTTCTATTTTCTACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 415 86</canonical_bands>
                <polymorphic_bands>585 415</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAAAAACCAAATGAATGGAAC</pcr_primer_p1>
		<pcr_primer_p2>TTGATAGTTGGACAACTGTTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAAAAACCAAATGAATGGAACAGGATGACTTTTCAGTGAATCGACGGTCCATTTTATACCTAGTGTAACAGGAAGATCTTTGTCAGAATCCAATATTTTCAAAACACAAATTTGATTTTTGAGCATTTTATTAACTTTATTCATACTAGAAACTTATTCAAAACAGATGATCTCCGAACACCAGACGGTCACTCTATCATCATTTTGTATCAGTTTCGAATTTACATAAAACAGTTGTCCAACTATCAA</canonical_amplicon>
		<polymorphic_amplicon>TTAAAAACCAAATGAATGGAACAGGATGACTTTTCAGTGAATCGACGGTCCATTTTATACCMAGTGTAACAGGAAGATCTTTGTCAGAATCCAATATTTTCAAAACACAAATTTGATTTTTGAGCATTTTATTAACTTTATTCATACTAGAAACTTATTCAAAACAGATGATCTCCGAACACCAGACGGTCACTCTATCATCATTTTGTATCAGTTTCGAATTTACATAAAACAGTTGTCCAACTATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37086</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>748392</contig_pos>
        <strand>-</strand>
        <context>TTGAGCATTT[A/G]ATTAARTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGTCAGAATCCAATATTTTCAAAACACAAATTTGATTTTTGAGCATTT</left_flank>
        <right_flank>ATTAACTTTATTCATACTAGAAACTTATTCAAAACAGATGATCTCCGAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAGGAAGATCTCCGAGGATATCAGTCAAAAATGATGGAATTTCAGTGATATTCCCGGGAATAGGTAATCCCAATCCACCTGGATTTCCACCAAGAACACTCAAAAGATTTTGAAGAACATCTTGGTTTCCTCCAAGAAGATCTCCCACAATTCCACCGATTCCTTCTCCATTTCCTCCTCCAATGATTCCTCCTAAACCACCGTCGCTTCCTCCAACAACACCCCCAATTCCTCCGTTTTCTCCTCCTCCGATAATTGATCCGAGATCAGGAAGAGCCGAAGCAAGGGCAAGGGAAGCAATGAGAGCAAAGGCAACTTTGGATGAACACAGACTGAAAAAGCTTTAAATATTTTTAAAAAAACTGATTTTAAAAACCAAATGAATGGAACAGGATGACTTTTCAGTGAATCGACGGTCCATTTTATACCTAGTGTAACAGGAAGATCTTTGTCAGAATCCAATATTTTCAAAACACAAATTTGATTTTTGAGCATTTTATTAACTTTATTCATACTAGAAACTTATTCAAAACAGATGATCTCCGAACACCAGACGGTCACTCTATCATCATTTTGTATCAGTTTCGAATTTACATAAAACAGTTGTCCAACTATCAATAGTAGAATCCTTCCAGATATTGAGTGTATTCTATCTCAAAAATGAGAAATCATTAAGCTAAAAGAACTGAAGTTTTTCTTACAATGAAACAGTGATTCTTCCTTACAGCTCTATTCATCGTATAAAGGGATCTGTGTCGTCTATGAAAATAGATATTTTCAAAACAAAGTGTCCATTTGAATAATCTGAATAAAAATAGTTATTTTAAGGATATAATCCGGTTGATGGTGTCTGAAACAAGAAACAATAACCGTATAAAAAGAACTTCAGATGGTGTGGATCGTATCTTTTCTCGTTTCTATTTTCTACAATCTCATCTGAAAATTCAGTTTTCCGTCATGTGTTCATCCAAAGTTGCCATTGCTCTGATTGCTTCCCT</canonical>
            <polymorphic>TTCAGGAAGATCTCCGAGGATATCAGTCAAAAATGATGGAATTTCAGTGATATTCCCGGGAATAGGTAATCCCAATCCACCTGGATTTCCACCAAGAACACTCAAAAGATTTTGAAGAACATCTTGGTTTCCTCCAAGAAGATCTCCCACAATTCCACCGATTCCTTCTCCATTTCCTCCTCCAATGATTCCTCCTAAACCACCGTCGCTTCCTCCAACAACACCCCCAATTCCTCCGTTTTCTCCTCCTCCGATAATTGATCCGAGATCAGGAAGAGCCGAAGCAAGGGCAAGGGAAGCAATGAGAGCAAAGGCAACTTTGGATGAACACAGACTGAAAAAGCTTTAAATATTTTTAAAAAAACTGATTTTAAAAACCAAATGAATGGAACAGGATGACTTTTCAGTGAATCGACGGTCCATTTTATACCTAGTGTAACAGGAAGATCTTTGTCAGAATCCAATATTTTCAAAACACAAATTTGATTTTTGAGCATTTRATTAACTTTATTCATACTAGAAACTTATTCAAAACAGATGATCTCCGAACACCAGACGGTCACTCTATCATCATTTTGTATCAGTTTCGAATTTACATAAAACAGTTGTCCAACTATCAATAGTAGAATCCTTCCAGATATTGAGTGTATTCTATCTCAAAAATGAGAAATCATTAAGCTAAAAGAACTGAAGTTTTTCTTACAATGAAACAGTGATTCTTCCTTACAGCTCTATTCATCGTATAAAGGGATCTGTGTCGTCTATGAAAATAGATATTTTCAAAACAAAGTGTCCATTTGAATAATCTGAATAAAAATAGTTATTTTAAGGATATAATCCGGTTGATGGTGTCTGAAACAAGAAACAATAACCGTATAAAAAGAACTTCAGATGGTGTGGATCGTATCTTTTCTCGTTTCTATTTTCTACAATCTCATCTGAAAATTCAGTTTTCCGTCATGTGTTCATCCAAAGTTGCCATTGCTCTGATTGCTTCCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAACAGGAAGATCTTTGTCAGA</pcr_primer_p1>
		<pcr_primer_p2>GCTTAATGATTTCTCATTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GTAACAGGAAGATCTTTGTCAGAATCCAATATTTTCAAAACACAAATTTGATTTTTGAGCATTTTATTAACTTTATTCATACTAGAAACTTATTCAAAACAGATGATCTCCGAACACCAGACGGTCACTCTATCATCATTTTGTATCAGTTTCGAATTTACATAAAACAGTTGTCCAACTATCAATAGTAGAATCCTTCCAGATATTGAGTGTATTCTATCTCAAAAATGAGAAATCATTAAGC</canonical_amplicon>
		<polymorphic_amplicon>GTAACAGGAAGATCTTTGTCAGAATCCAATATTTTCAAAACACAAATTTGATTTTTGAGCATTTRATTAACTTTATTCATACTAGAAACTTATTCAAAACAGATGATCTCCGAACACCAGACGGTCACTCTATCATCATTTTGTATCAGTTTCGAATTTACATAAAACAGTTGTCCAACTATCAATAGTAGAATCCTTCCAGATATTGAGTGTATTCTATCTCAAAAATGAGAAATCATTAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37087</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>748398</contig_pos>
        <strand>-</strand>
        <context>ATTTRATTAA[A/G]TTTATTCATA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAATCCAATATTTTCAAAACACAAATTTGATTTTTGAGCATTTTATTAA</left_flank>
        <right_flank>TTTATTCATACTAGAAACTTATTCAAAACAGATGATCTCCGAACACCAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGATCTCCGAGGATATCAGTCAAAAATGATGGAATTTCAGTGATATTCCCGGGAATAGGTAATCCCAATCCACCTGGATTTCCACCAAGAACACTCAAAAGATTTTGAAGAACATCTTGGTTTCCTCCAAGAAGATCTCCCACAATTCCACCGATTCCTTCTCCATTTCCTCCTCCAATGATTCCTCCTAAACCACCGTCGCTTCCTCCAACAACACCCCCAATTCCTCCGTTTTCTCCTCCTCCGATAATTGATCCGAGATCAGGAAGAGCCGAAGCAAGGGCAAGGGAAGCAATGAGAGCAAAGGCAACTTTGGATGAACACAGACTGAAAAAGCTTTAAATATTTTTAAAAAAACTGATTTTAAAAACCAAATGAATGGAACAGGATGACTTTTCAGTGAATCGACGGTCCATTTTATACCTAGTGTAACAGGAAGATCTTTGTCAGAATCCAATATTTTCAAAACACAAATTTGATTTTTGAGCATTTTATTAACTTTATTCATACTAGAAACTTATTCAAAACAGATGATCTCCGAACACCAGACGGTCACTCTATCATCATTTTGTATCAGTTTCGAATTTACATAAAACAGTTGTCCAACTATCAATAGTAGAATCCTTCCAGATATTGAGTGTATTCTATCTCAAAAATGAGAAATCATTAAGCTAAAAGAACTGAAGTTTTTCTTACAATGAAACAGTGATTCTTCCTTACAGCTCTATTCATCGTATAAAGGGATCTGTGTCGTCTATGAAAATAGATATTTTCAAAACAAAGTGTCCATTTGAATAATCTGAATAAAAATAGTTATTTTAAGGATATAATCCGGTTGATGGTGTCTGAAACAAGAAACAATAACCGTATAAAAAGAACTTCAGATGGTGTGGATCGTATCTTTTCTCGTTTCTATTTTCTACAATCTCATCTGAAAATTCAGTTTTCCGTCATGTGTTCATCCAAAGTTGCCATTGCTCTGATTGCTTCCCTTGCCTT</canonical>
            <polymorphic>AAGATCTCCGAGGATATCAGTCAAAAATGATGGAATTTCAGTGATATTCCCGGGAATAGGTAATCCCAATCCACCTGGATTTCCACCAAGAACACTCAAAAGATTTTGAAGAACATCTTGGTTTCCTCCAAGAAGATCTCCCACAATTCCACCGATTCCTTCTCCATTTCCTCCTCCAATGATTCCTCCTAAACCACCGTCGCTTCCTCCAACAACACCCCCAATTCCTCCGTTTTCTCCTCCTCCGATAATTGATCCGAGATCAGGAAGAGCCGAAGCAAGGGCAAGGGAAGCAATGAGAGCAAAGGCAACTTTGGATGAACACAGACTGAAAAAGCTTTAAATATTTTTAAAAAAACTGATTTTAAAAACCAAATGAATGGAACAGGATGACTTTTCAGTGAATCGACGGTCCATTTTATACCTAGTGTAACAGGAAGATCTTTGTCAGAATCCAATATTTTCAAAACACAAATTTGATTTTTGAGCATTTTATTAARTTTATTCATACTAGAAACTTATTCAAAACAGATGATCTCCGAACACCAGACGGTCACTCTATCATCATTTTGTATCAGTTTCGAATTTACATAAAACAGTTGTCCAACTATCAATAGTAGAATCCTTCCAGATATTGAGTGTATTCTATCTCAAAAATGAGAAATCATTAAGCTAAAAGAACTGAAGTTTTTCTTACAATGAAACAGTGATTCTTCCTTACAGCTCTATTCATCGTATAAAGGGATCTGTGTCGTCTATGAAAATAGATATTTTCAAAACAAAGTGTCCATTTGAATAATCTGAATAAAAATAGTTATTTTAAGGATATAATCCGGTTGATGGTGTCTGAAACAAGAAACAATAACCGTATAAAAAGAACTTCAGATGGTGTGGATCGTATCTTTTCTCGTTTCTATTTTCTACAATCTCATCTGAAAATTCAGTTTTCCGTCATGTGTTCATCCAAAGTTGCCATTGCTCTGATTGCTTCCCTTGCCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAACAGGAAGATCTTTGTCAGA</pcr_primer_p1>
		<pcr_primer_p2>GCTTAATGATTTCTCATTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GTAACAGGAAGATCTTTGTCAGAATCCAATATTTTCAAAACACAAATTTGATTTTTGAGCATTTTATTAACTTTATTCATACTAGAAACTTATTCAAAACAGATGATCTCCGAACACCAGACGGTCACTCTATCATCATTTTGTATCAGTTTCGAATTTACATAAAACAGTTGTCCAACTATCAATAGTAGAATCCTTCCAGATATTGAGTGTATTCTATCTCAAAAATGAGAAATCATTAAGC</canonical_amplicon>
		<polymorphic_amplicon>GTAACAGGAAGATCTTTGTCAGAATCCAATATTTTCAAAACACAAATTTGATTTTTGAGCATTTTATTAARTTTATTCATACTAGAAACTTATTCAAAACAGATGATCTCCGAACACCAGACGGTCACTCTATCATCATTTTGTATCAGTTTCGAATTTACATAAAACAGTTGTCCAACTATCAATAGTAGAATCCTTCCAGATATTGAGTGTATTCTATCTCAAAAATGAGAAATCATTAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37088</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>748846</contig_pos>
        <strand>+</strand>
        <context>AATTCAGTTT[C/T]CCGTCATGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTATCTTTTCTCGTTTCTATTTTCTACAATCTCATCTGAAAATTCAGTTT</left_flank>
        <right_flank>CCGTCATGTGTTCATCCAAAGTTGCCATTGCTCTGATTGCTTCCCTTGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAATCCAATATTTTCAAAACACAAATTTGATTTTTGAGCATTTTATTAACTTTATTCATACTAGAAACTTATTCAAAACAGATGATCTCCGAACACCAGACGGTCACTCTATCATCATTTTGTATCAGTTTCGAATTTACATAAAACAGTTGTCCAACTATCAATAGTAGAATCCTTCCAGATATTGAGTGTATTCTATCTCAAAAATGAGAAATCATTAAGCTAAAAGAACTGAAGTTTTTCTTACAATGAAACAGTGATTCTTCCTTACAGCTCTATTCATCGTATAAAGGGATCTGTGTCGTCTATGAAAATAGATATTTTCAAAACAAAGTGTCCATTTGAATAATCTGAATAAAAATAGTTATTTTAAGGATATAATCCGGTTGATGGTGTCTGAAACAAGAAACAATAACCGTATAAAAAGAACTTCAGATGGTGTGGATCGTATCTTTTCTCGTTTCTATTTTCTACAATCTCATCTGAAAATTCAGTTTTCCGTCATGTGTTCATCCAAAGTTGCCATTGCTCTGATTGCTTCCCTTGCCTTCTCTTCGGCTCTTCCAATTCTTGATGGAATAATCGGAGGAGGTGATAATGGAGGAATTGGAGGAGTTGTTGGTGGAGGAGACGGTGGTTTAGGAGGAATCATTGGAGGAGGGAATGGAGGAGGAATTGGTGGAATTGTTGGTGATCTTCTTGGAGGAGATCAAGATGTCCTCCAAAATCTTTTGAGTGTTCTTGGTGGAAATCCAGGTGGATTGGGATTACCTATTCTCGGAAATATCACTGAAATTCCATCATTTTTGACTGATATCCTCGGAGATCTTCCTGAAGAAACTATTCAAAAAATCACTGATCTTCTTGGAGAAGATCTTCCAATCAGTGAACTCCTCTCCCGACTCGATGCTCTGCTCCCGGAGGGTGTTCTTGAGGTGAGTCAGAAATCTGATCTATTTTTTGGTAAATGTGAAATTCAGCAACTCCTTGCCACAGTC</canonical>
            <polymorphic>CAGAATCCAATATTTTCAAAACACAAATTTGATTTTTGAGCATTTTATTAACTTTATTCATACTAGAAACTTATTCAAAACAGATGATCTCCGAACACCAGACGGTCACTCTATCATCATTTTGTATCAGTTTCGAATTTACATAAAACAGTTGTCCAACTATCAATAGTAGAATCCTTCCAGATATTGAGTGTATTCTATCTCAAAAATGAGAAATCATTAAGCTAAAAGAACTGAAGTTTTTCTTACAATGAAACAGTGATTCTTCCTTACAGCTCTATTCATCGTATAAAGGGATCTGTGTCGTCTATGAAAATAGATATTTTCAAAACAAAGTGTCCATTTGAATAATCTGAATAAAAATAGTTATTTTAAGGATATAATCCGGTTGATGGTGTCTGAAACAAGAAACAATAACCGTATAAAAAGAACTTCAGATGGTGTGGATCGTATCTTTTCTCGTTTCTATTTTCTACAATCTCATCTGAAAATTCAGTTTYCCGTCATGTGTTCATCCAAAGTTGCCATTGCTCTGATTGCTTCCCTTGCCTTCTCTTCGGCTCTTCCAATTCTTGATGGAATAATCGGAGGAGGTGATAATGGAGGAATTGGAGGAGTTGTTGGTGGAGGAGACGGTGGTTTAGGAGGAATCATTGGAGGAGGGAATGGAGGAGGAATTGGTGGAATTGTTGGTGATCTTCTTGGAGGAGATCAAGATGTCCTCCAAAATCTTTTGAGTGTTCTTGGTGGAAATCCAGGTGGATTGGGATTACCTATTCTCGGAAATATCACTGAAATTCCATCATTTTTGACTGATATCCTCGGAGATCTTCCTGAAGAAACTATTCAAAAAATCACTGATCTTCTTGGAGAAGATCTTCCAATCAGTGAACTCCTCTCCCGACTCGATGCTCTGCTCCCGGAGGGTGTTCTTGAGGTGAGTCAGAAATCTGATCTATTTTTTGGTAAATGTGAAATTCAGCAACTCCTTGCCACAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGTGTCCATTTGAATAATCTG</pcr_primer_p1>
		<pcr_primer_p2>ATTCCATCAAGAATTGGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGTGTCCATTTGAATAATCTGAATAAAAATAGTTATTTTAAGGATATAATCCGGTTGATGGTGTCTGAAACAAGAAACAATAACCGTATAAAAAGAACTTCAGATGGTGTGGATCGTATCTTTTCTCGTTTCTATTTTCTACAATCTCATCTGAAAATTCAGTTTTCCGTCATGTGTTCATCCAAAGTTGCCATTGCTCTGATTGCTTCCCTTGCCTTCTCTTCGGCTCTTCCAATTCTTGATGGAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAGTGTCCATTTGAATAATCTGAATAAAAATAGTTATTTTAAGGATATAATCCGGTTGATGGTGTCTGAAACAAGAAACAATAACCGTATAAAAAGAACTTCAGATGGTGTGGATCGTATCTTTTCTCGTTTCTATTTTCTACAATCTCATCTGAAAATTCAGTTTYCCGTCATGTGTTCATCCAAAGTTGCCATTGCTCTGATTGCTTCCCTTGCCTTCTCTTCGGCTCTTCCAATTCTTGATGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37089</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>748890</contig_pos>
        <strand>+</strand>
        <context>TGATTGCTTC[A/C]CTTGCCTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAGTTTTCCGTCATGTGTTCATCCAAAGTTGCCATTGCTCTGATTGCTTC</left_flank>
        <right_flank>CTTGCCTTCTCTTCGGCTCTTCCAATTCTTGATGGAATAATCGGAGGAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATTAACTTTATTCATACTAGAAACTTATTCAAAACAGATGATCTCCGAACACCAGACGGTCACTCTATCATCATTTTGTATCAGTTTCGAATTTACATAAAACAGTTGTCCAACTATCAATAGTAGAATCCTTCCAGATATTGAGTGTATTCTATCTCAAAAATGAGAAATCATTAAGCTAAAAGAACTGAAGTTTTTCTTACAATGAAACAGTGATTCTTCCTTACAGCTCTATTCATCGTATAAAGGGATCTGTGTCGTCTATGAAAATAGATATTTTCAAAACAAAGTGTCCATTTGAATAATCTGAATAAAAATAGTTATTTTAAGGATATAATCCGGTTGATGGTGTCTGAAACAAGAAACAATAACCGTATAAAAAGAACTTCAGATGGTGTGGATCGTATCTTTTCTCGTTTCTATTTTCTACAATCTCATCTGAAAATTCAGTTTTCCGTCATGTGTTCATCCAAAGTTGCCATTGCTCTGATTGCTTCCCTTGCCTTCTCTTCGGCTCTTCCAATTCTTGATGGAATAATCGGAGGAGGTGATAATGGAGGAATTGGAGGAGTTGTTGGTGGAGGAGACGGTGGTTTAGGAGGAATCATTGGAGGAGGGAATGGAGGAGGAATTGGTGGAATTGTTGGTGATCTTCTTGGAGGAGATCAAGATGTCCTCCAAAATCTTTTGAGTGTTCTTGGTGGAAATCCAGGTGGATTGGGATTACCTATTCTCGGAAATATCACTGAAATTCCATCATTTTTGACTGATATCCTCGGAGATCTTCCTGAAGAAACTATTCAAAAAATCACTGATCTTCTTGGAGAAGATCTTCCAATCAGTGAACTCCTCTCCCGACTCGATGCTCTGCTCCCGGAGGGTGTTCTTGAGGTGAGTCAGAAATCTGATCTATTTTTTGGTAAATGTGAAATTCAGCAACTCCTTGCCACAGTCGCCGATCTTGTCTCCAAACTTTTGGCTGCAATTAGTAAAGTCCT</canonical>
            <polymorphic>TTATTAACTTTATTCATACTAGAAACTTATTCAAAACAGATGATCTCCGAACACCAGACGGTCACTCTATCATCATTTTGTATCAGTTTCGAATTTACATAAAACAGTTGTCCAACTATCAATAGTAGAATCCTTCCAGATATTGAGTGTATTCTATCTCAAAAATGAGAAATCATTAAGCTAAAAGAACTGAAGTTTTTCTTACAATGAAACAGTGATTCTTCCTTACAGCTCTATTCATCGTATAAAGGGATCTGTGTCGTCTATGAAAATAGATATTTTCAAAACAAAGTGTCCATTTGAATAATCTGAATAAAAATAGTTATTTTAAGGATATAATCCGGTTGATGGTGTCTGAAACAAGAAACAATAACCGTATAAAAAGAACTTCAGATGGTGTGGATCGTATCTTTTCTCGTTTCTATTTTCTACAATCTCATCTGAAAATTCAGTTTTCCGTCATGTGTTCATCCAAAGTTGCCATTGCTCTGATTGCTTCMCTTGCCTTCTCTTCGGCTCTTCCAATTCTTGATGGAATAATCGGAGGAGGTGATAATGGAGGAATTGGAGGAGTTGTTGGTGGAGGAGACGGTGGTTTAGGAGGAATCATTGGAGGAGGGAATGGAGGAGGAATTGGTGGAATTGTTGGTGATCTTCTTGGAGGAGATCAAGATGTCCTCCAAAATCTTTTGAGTGTTCTTGGTGGAAATCCAGGTGGATTGGGATTACCTATTCTCGGAAATATCACTGAAATTCCATCATTTTTGACTGATATCCTCGGAGATCTTCCTGAAGAAACTATTCAAAAAATCACTGATCTTCTTGGAGAAGATCTTCCAATCAGTGAACTCCTCTCCCGACTCGATGCTCTGCTCCCGGAGGGTGTTCTTGAGGTGAGTCAGAAATCTGATCTATTTTTTGGTAAATGTGAAATTCAGCAACTCCTTGCCACAGTCGCCGATCTTGTCTCCAAACTTTTGGCTGCAATTAGTAAAGTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGTATAAAAAGAACTTCAGATG</pcr_primer_p1>
		<pcr_primer_p2>CTCCAATGATTCCTCCTAAAC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CCGTATAAAAAGAACTTCAGATGGTGTGGATCGTATCTTTTCTCGTTTCTATTTTCTACAATCTCATCTGAAAATTCAGTTTTCCGTCATGTGTTCATCCAAAGTTGCCATTGCTCTGATTGCTTCCCTTGCCTTCTCTTCGGCTCTTCCAATTCTTGATGGAATAATCGGAGGAGGTGATAATGGAGGAATTGGAGGAGTTGTTGGTGGAGGAGACGGTGGTTTAGGAGGAATCATTGGAG</canonical_amplicon>
		<polymorphic_amplicon>CCGTATAAAAAGAACTTCAGATGGTGTGGATCGTATCTTTTCTCGTTTCTATTTTCTACAATCTCATCTGAAAATTCAGTTTTCCGTCATGTGTTCATCCAAAGTTGCCATTGCTCTGATTGCTTCMCTTGCCTTCTCTTCGGCTCTTCCAATTCTTGATGGAATAATCGGAGGAGGTGATAATGGAGGAATTGGAGGAGTTGTTGGTGGAGGAGACGGTGGTTTAGGAGGAATCATTGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37090</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>748971</contig_pos>
        <strand>+</strand>
        <context>GAGTTGTTGG[A/T]GGARGMGACG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATGGAATAATCGGAGGAGGTGATAATGGAGGAATTGGAGGAGTTGTTGG</left_flank>
        <right_flank>GGAGGAGACGGTGGTTTAGGAGGAATCATTGGAGGAGGGAATGGAGGAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAGTTTCGAATTTACATAAAACAGTTGTCCAACTATCAATAGTAGAATCCTTCCAGATATTGAGTGTATTCTATCTCAAAAATGAGAAATCATTAAGCTAAAAGAACTGAAGTTTTTCTTACAATGAAACAGTGATTCTTCCTTACAGCTCTATTCATCGTATAAAGGGATCTGTGTCGTCTATGAAAATAGATATTTTCAAAACAAAGTGTCCATTTGAATAATCTGAATAAAAATAGTTATTTTAAGGATATAATCCGGTTGATGGTGTCTGAAACAAGAAACAATAACCGTATAAAAAGAACTTCAGATGGTGTGGATCGTATCTTTTCTCGTTTCTATTTTCTACAATCTCATCTGAAAATTCAGTTTTCCGTCATGTGTTCATCCAAAGTTGCCATTGCTCTGATTGCTTCCCTTGCCTTCTCTTCGGCTCTTCCAATTCTTGATGGAATAATCGGAGGAGGTGATAATGGAGGAATTGGAGGAGTTGTTGGTGGAGGAGACGGTGGTTTAGGAGGAATCATTGGAGGAGGGAATGGAGGAGGAATTGGTGGAATTGTTGGTGATCTTCTTGGAGGAGATCAAGATGTCCTCCAAAATCTTTTGAGTGTTCTTGGTGGAAATCCAGGTGGATTGGGATTACCTATTCTCGGAAATATCACTGAAATTCCATCATTTTTGACTGATATCCTCGGAGATCTTCCTGAAGAAACTATTCAAAAAATCACTGATCTTCTTGGAGAAGATCTTCCAATCAGTGAACTCCTCTCCCGACTCGATGCTCTGCTCCCGGAGGGTGTTCTTGAGGTGAGTCAGAAATCTGATCTATTTTTTGGTAAATGTGAAATTCAGCAACTCCTTGCCACAGTCGCCGATCTTGTCTCCAAACTTTTGGCTGCAATTAGTAAAGTCCTCAGTAACCTTCAATCAGTATTCGAGCAATTGTCTACCATTCTGAACAATAAGGATCTAACACTTGAGAAACAAAAGGAAGC</canonical>
            <polymorphic>ATCAGTTTCGAATTTACATAAAACAGTTGTCCAACTATCAATAGTAGAATCCTTCCAGATATTGAGTGTATTCTATCTCAAAAATGAGAAATCATTAAGCTAAAAGAACTGAAGTTTTTCTTACAATGAAACAGTGATTCTTCCTTACAGCTCTATTCATCGTATAAAGGGATCTGTGTCGTCTATGAAAATAGATATTTTCAAAACAAAGTGTCCATTTGAATAATCTGAATAAAAATAGTTATTTTAAGGATATAATCCGGTTGATGGTGTCTGAAACAAGAAACAATAACCGTATAAAAAGAACTTCAGATGGTGTGGATCGTATCTTTTCTCGTTTCTATTTTCTACAATCTCATCTGAAAATTCAGTTTTCCGTCATGTGTTCATCCAAAGTTGCCATTGCTCTGATTGCTTCCCTTGCCTTCTCTTCGGCTCTTCCAATTCTTGATGGAATAATCGGAGGAGGTGATAATGGAGGAATTGGAGGAGTTGTTGGWGGAGGAGACGGTGGTTTAGGAGGAATCATTGGAGGAGGGAATGGAGGAGGAATTGGTGGAATTGTTGGTGATCTTCTTGGAGGAGATCAAGATGTCCTCCAAAATCTTTTGAGTGTTCTTGGTGGAAATCCAGGTGGATTGGGATTACCTATTCTCGGAAATATCACTGAAATTCCATCATTTTTGACTGATATCCTCGGAGATCTTCCTGAAGAAACTATTCAAAAAATCACTGATCTTCTTGGAGAAGATCTTCCAATCAGTGAACTCCTCTCCCGACTCGATGCTCTGCTCCCGGAGGGTGTTCTTGAGGTGAGTCAGAAATCTGATCTATTTTTTGGTAAATGTGAAATTCAGCAACTCCTTGCCACAGTCGCCGATCTTGTCTCCAAACTTTTGGCTGCAATTAGTAAAGTCCTCAGTAACCTTCAATCAGTATTCGAGCAATTGTCTACCATTCTGAACAATAAGGATCTAACACTTGAGAAACAAAAGGAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>110 86 68 68 66 65 59 46 45 45 42 39 35 34 33 30 30 21 20 12 12 12 11 9 2</canonical_bands>
                <polymorphic_bands>110 86 68 68 66 65 59 46 45 45 42 42 39 35 34 33 30 21 20 12 12 11 9 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCATGTGTTCATCCAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>CACCAAGAACACTCAAAAGATT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTCATGTGTTCATCCAAAGTTGCCATTGCTCTGATTGCTTCCCTTGCCTTCTCTTCGGCTCTTCCAATTCTTGATGGAATAATCGGAGGAGGTGATAATGGAGGAATTGGAGGAGTTGTTGGTGGAGGAGACGGTGGTTTAGGAGGAATCATTGGAGGAGGGAATGGAGGAGGAATTGGTGGAATTGTTGGTGATCTTCTTGGAGGAGATCAAGATGTCCTCCAAAATCTTTTGAGTGTTCTTGGTG</canonical_amplicon>
		<polymorphic_amplicon>GTCATGTGTTCATCCAAAGTTGCCATTGCTCTGATTGCTTCCCTTGCCTTCTCTTCGGCTCTTCCAATTCTTGATGGAATAATCGGAGGAGGTGATAATGGAGGAATTGGAGGAGTTGTTGGWGGAGGAGACGGTGGTTTAGGAGGAATCATTGGAGGAGGGAATGGAGGAGGAATTGGTGGAATTGTTGGTGATCTTCTTGGAGGAGATCAAGATGTCCTCCAAAATCTTTTGAGTGTTCTTGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37091</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>748975</contig_pos>
        <strand>+</strand>
        <context>TGTTGGWGGA[A/G]GMGACGGTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATAATCGGAGGAGGTGATAATGGAGGAATTGGAGGAGTTGTTGGTGGA</left_flank>
        <right_flank>GAGACGGTGGTTTAGGAGGAATCATTGGAGGAGGGAATGGAGGAGGAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTCGAATTTACATAAAACAGTTGTCCAACTATCAATAGTAGAATCCTTCCAGATATTGAGTGTATTCTATCTCAAAAATGAGAAATCATTAAGCTAAAAGAACTGAAGTTTTTCTTACAATGAAACAGTGATTCTTCCTTACAGCTCTATTCATCGTATAAAGGGATCTGTGTCGTCTATGAAAATAGATATTTTCAAAACAAAGTGTCCATTTGAATAATCTGAATAAAAATAGTTATTTTAAGGATATAATCCGGTTGATGGTGTCTGAAACAAGAAACAATAACCGTATAAAAAGAACTTCAGATGGTGTGGATCGTATCTTTTCTCGTTTCTATTTTCTACAATCTCATCTGAAAATTCAGTTTTCCGTCATGTGTTCATCCAAAGTTGCCATTGCTCTGATTGCTTCCCTTGCCTTCTCTTCGGCTCTTCCAATTCTTGATGGAATAATCGGAGGAGGTGATAATGGAGGAATTGGAGGAGTTGTTGGTGGAGGAGACGGTGGTTTAGGAGGAATCATTGGAGGAGGGAATGGAGGAGGAATTGGTGGAATTGTTGGTGATCTTCTTGGAGGAGATCAAGATGTCCTCCAAAATCTTTTGAGTGTTCTTGGTGGAAATCCAGGTGGATTGGGATTACCTATTCTCGGAAATATCACTGAAATTCCATCATTTTTGACTGATATCCTCGGAGATCTTCCTGAAGAAACTATTCAAAAAATCACTGATCTTCTTGGAGAAGATCTTCCAATCAGTGAACTCCTCTCCCGACTCGATGCTCTGCTCCCGGAGGGTGTTCTTGAGGTGAGTCAGAAATCTGATCTATTTTTTGGTAAATGTGAAATTCAGCAACTCCTTGCCACAGTCGCCGATCTTGTCTCCAAACTTTTGGCTGCAATTAGTAAAGTCCTCAGTAACCTTCAATCAGTATTCGAGCAATTGTCTACCATTCTGAACAATAAGGATCTAACACTTGAGAAACAAAAGGAAGCCGTT</canonical>
            <polymorphic>GTTTCGAATTTACATAAAACAGTTGTCCAACTATCAATAGTAGAATCCTTCCAGATATTGAGTGTATTCTATCTCAAAAATGAGAAATCATTAAGCTAAAAGAACTGAAGTTTTTCTTACAATGAAACAGTGATTCTTCCTTACAGCTCTATTCATCGTATAAAGGGATCTGTGTCGTCTATGAAAATAGATATTTTCAAAACAAAGTGTCCATTTGAATAATCTGAATAAAAATAGTTATTTTAAGGATATAATCCGGTTGATGGTGTCTGAAACAAGAAACAATAACCGTATAAAAAGAACTTCAGATGGTGTGGATCGTATCTTTTCTCGTTTCTATTTTCTACAATCTCATCTGAAAATTCAGTTTTCCGTCATGTGTTCATCCAAAGTTGCCATTGCTCTGATTGCTTCCCTTGCCTTCTCTTCGGCTCTTCCAATTCTTGATGGAATAATCGGAGGAGGTGATAATGGAGGAATTGGAGGAGTTGTTGGTGGARGAGACGGTGGTTTAGGAGGAATCATTGGAGGAGGGAATGGAGGAGGAATTGGTGGAATTGTTGGTGATCTTCTTGGAGGAGATCAAGATGTCCTCCAAAATCTTTTGAGTGTTCTTGGTGGAAATCCAGGTGGATTGGGATTACCTATTCTCGGAAATATCACTGAAATTCCATCATTTTTGACTGATATCCTCGGAGATCTTCCTGAAGAAACTATTCAAAAAATCACTGATCTTCTTGGAGAAGATCTTCCAATCAGTGAACTCCTCTCCCGACTCGATGCTCTGCTCCCGGAGGGTGTTCTTGAGGTGAGTCAGAAATCTGATCTATTTTTTGGTAAATGTGAAATTCAGCAACTCCTTGCCACAGTCGCCGATCTTGTCTCCAAACTTTTGGCTGCAATTAGTAAAGTCCTCAGTAACCTTCAATCAGTATTCGAGCAATTGTCTACCATTCTGAACAATAAGGATCTAACACTTGAGAAACAAAAGGAAGCCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATAATCGGAGGAGGTGATA</pcr_primer_p1>
		<pcr_primer_p2>GAGGATATCAGTCAAAAATGATG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAATAATCGGAGGAGGTGATAATGGAGGAATTGGAGGAGTTGTTGGTGGAGGAGACGGTGGTTTAGGAGGAATCATTGGAGGAGGGAATGGAGGAGGAATTGGTGGAATTGTTGGTGATCTTCTTGGAGGAGATCAAGATGTCCTCCAAAATCTTTTGAGTGTTCTTGGTGGAAATCCAGGTGGATTGGGATTACCTATTCTCGGAAATATCACTGAAATTCCATCATTTTTGACTGATATCCTC</canonical_amplicon>
		<polymorphic_amplicon>GAATAATCGGAGGAGGTGATAATGGAGGAATTGGAGGAGTTGTTGGTGGARGAGACGGTGGTTTAGGAGGAATCATTGGAGGAGGGAATGGAGGAGGAATTGGTGGAATTGTTGGTGATCTTCTTGGAGGAGATCAAGATGTCCTCCAAAATCTTTTGAGTGTTCTTGGTGGAAATCCAGGTGGATTGGGATTACCTATTCTCGGAAATATCACTGAAATTCCATCATTTTTGACTGATATCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37092</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>748977</contig_pos>
        <strand>+</strand>
        <context>TTGGWGGARG[A/C]GACGGTGGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATAATCGGAGGAGGTGATAATGGAGGAATTGGAGGAGTTGTTGGTGGAGG</left_flank>
        <right_flank>GACGGTGGTTTAGGAGGAATCATTGGAGGAGGGAATGGAGGAGGAATTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGAATTTACATAAAACAGTTGTCCAACTATCAATAGTAGAATCCTTCCAGATATTGAGTGTATTCTATCTCAAAAATGAGAAATCATTAAGCTAAAAGAACTGAAGTTTTTCTTACAATGAAACAGTGATTCTTCCTTACAGCTCTATTCATCGTATAAAGGGATCTGTGTCGTCTATGAAAATAGATATTTTCAAAACAAAGTGTCCATTTGAATAATCTGAATAAAAATAGTTATTTTAAGGATATAATCCGGTTGATGGTGTCTGAAACAAGAAACAATAACCGTATAAAAAGAACTTCAGATGGTGTGGATCGTATCTTTTCTCGTTTCTATTTTCTACAATCTCATCTGAAAATTCAGTTTTCCGTCATGTGTTCATCCAAAGTTGCCATTGCTCTGATTGCTTCCCTTGCCTTCTCTTCGGCTCTTCCAATTCTTGATGGAATAATCGGAGGAGGTGATAATGGAGGAATTGGAGGAGTTGTTGGTGGAGGAGACGGTGGTTTAGGAGGAATCATTGGAGGAGGGAATGGAGGAGGAATTGGTGGAATTGTTGGTGATCTTCTTGGAGGAGATCAAGATGTCCTCCAAAATCTTTTGAGTGTTCTTGGTGGAAATCCAGGTGGATTGGGATTACCTATTCTCGGAAATATCACTGAAATTCCATCATTTTTGACTGATATCCTCGGAGATCTTCCTGAAGAAACTATTCAAAAAATCACTGATCTTCTTGGAGAAGATCTTCCAATCAGTGAACTCCTCTCCCGACTCGATGCTCTGCTCCCGGAGGGTGTTCTTGAGGTGAGTCAGAAATCTGATCTATTTTTTGGTAAATGTGAAATTCAGCAACTCCTTGCCACAGTCGCCGATCTTGTCTCCAAACTTTTGGCTGCAATTAGTAAAGTCCTCAGTAACCTTCAATCAGTATTCGAGCAATTGTCTACCATTCTGAACAATAAGGATCTAACACTTGAGAAACAAAAGGAAGCCGTTGA</canonical>
            <polymorphic>TTCGAATTTACATAAAACAGTTGTCCAACTATCAATAGTAGAATCCTTCCAGATATTGAGTGTATTCTATCTCAAAAATGAGAAATCATTAAGCTAAAAGAACTGAAGTTTTTCTTACAATGAAACAGTGATTCTTCCTTACAGCTCTATTCATCGTATAAAGGGATCTGTGTCGTCTATGAAAATAGATATTTTCAAAACAAAGTGTCCATTTGAATAATCTGAATAAAAATAGTTATTTTAAGGATATAATCCGGTTGATGGTGTCTGAAACAAGAAACAATAACCGTATAAAAAGAACTTCAGATGGTGTGGATCGTATCTTTTCTCGTTTCTATTTTCTACAATCTCATCTGAAAATTCAGTTTTCCGTCATGTGTTCATCCAAAGTTGCCATTGCTCTGATTGCTTCCCTTGCCTTCTCTTCGGCTCTTCCAATTCTTGATGGAATAATCGGAGGAGGTGATAATGGAGGAATTGGAGGAGTTGTTGGTGGAGGMGACGGTGGTTTAGGAGGAATCATTGGAGGAGGGAATGGAGGAGGAATTGGTGGAATTGTTGGTGATCTTCTTGGAGGAGATCAAGATGTCCTCCAAAATCTTTTGAGTGTTCTTGGTGGAAATCCAGGTGGATTGGGATTACCTATTCTCGGAAATATCACTGAAATTCCATCATTTTTGACTGATATCCTCGGAGATCTTCCTGAAGAAACTATTCAAAAAATCACTGATCTTCTTGGAGAAGATCTTCCAATCAGTGAACTCCTCTCCCGACTCGATGCTCTGCTCCCGGAGGGTGTTCTTGAGGTGAGTCAGAAATCTGATCTATTTTTTGGTAAATGTGAAATTCAGCAACTCCTTGCCACAGTCGCCGATCTTGTCTCCAAACTTTTGGCTGCAATTAGTAAAGTCCTCAGTAACCTTCAATCAGTATTCGAGCAATTGTCTACCATTCTGAACAATAAGGATCTAACACTTGAGAAACAAAAGGAAGCCGTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAATCGGAGGAGGTGATAAT</pcr_primer_p1>
		<pcr_primer_p2>GAGGATATCAGTCAAAAATGATG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AATAATCGGAGGAGGTGATAATGGAGGAATTGGAGGAGTTGTTGGTGGAGGAGACGGTGGTTTAGGAGGAATCATTGGAGGAGGGAATGGAGGAGGAATTGGTGGAATTGTTGGTGATCTTCTTGGAGGAGATCAAGATGTCCTCCAAAATCTTTTGAGTGTTCTTGGTGGAAATCCAGGTGGATTGGGATTACCTATTCTCGGAAATATCACTGAAATTCCATCATTTTTGACTGATATCCTC</canonical_amplicon>
		<polymorphic_amplicon>AATAATCGGAGGAGGTGATAATGGAGGAATTGGAGGAGTTGTTGGTGGAGGMGACGGTGGTTTAGGAGGAATCATTGGAGGAGGGAATGGAGGAGGAATTGGTGGAATTGTTGGTGATCTTCTTGGAGGAGATCAAGATGTCCTCCAAAATCTTTTGAGTGTTCTTGGTGGAAATCCAGGTGGATTGGGATTACCTATTCTCGGAAATATCACTGAAATTCCATCATTTTTGACTGATATCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37093</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>749040</contig_pos>
        <strand>+</strand>
        <context>GAATTGTTGG[A/T]GATCTTCTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAGGAATCATTGGAGGAGGGAATGGAGGAGGAATTGGTGGAATTGTTGG</left_flank>
        <right_flank>GATCTTCTTGGAGGAGATCAAGATGTCCTCCAAAATCTTTTGAGTGTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCTATCTCAAAAATGAGAAATCATTAAGCTAAAAGAACTGAAGTTTTTCTTACAATGAAACAGTGATTCTTCCTTACAGCTCTATTCATCGTATAAAGGGATCTGTGTCGTCTATGAAAATAGATATTTTCAAAACAAAGTGTCCATTTGAATAATCTGAATAAAAATAGTTATTTTAAGGATATAATCCGGTTGATGGTGTCTGAAACAAGAAACAATAACCGTATAAAAAGAACTTCAGATGGTGTGGATCGTATCTTTTCTCGTTTCTATTTTCTACAATCTCATCTGAAAATTCAGTTTTCCGTCATGTGTTCATCCAAAGTTGCCATTGCTCTGATTGCTTCCCTTGCCTTCTCTTCGGCTCTTCCAATTCTTGATGGAATAATCGGAGGAGGTGATAATGGAGGAATTGGAGGAGTTGTTGGTGGAGGAGACGGTGGTTTAGGAGGAATCATTGGAGGAGGGAATGGAGGAGGAATTGGTGGAATTGTTGGTGATCTTCTTGGAGGAGATCAAGATGTCCTCCAAAATCTTTTGAGTGTTCTTGGTGGAAATCCAGGTGGATTGGGATTACCTATTCTCGGAAATATCACTGAAATTCCATCATTTTTGACTGATATCCTCGGAGATCTTCCTGAAGAAACTATTCAAAAAATCACTGATCTTCTTGGAGAAGATCTTCCAATCAGTGAACTCCTCTCCCGACTCGATGCTCTGCTCCCGGAGGGTGTTCTTGAGGTGAGTCAGAAATCTGATCTATTTTTTGGTAAATGTGAAATTCAGCAACTCCTTGCCACAGTCGCCGATCTTGTCTCCAAACTTTTGGCTGCAATTAGTAAAGTCCTCAGTAACCTTCAATCAGTATTCGAGCAATTGTCTACCATTCTGAACAATAAGGATCTAACACTTGAGAAACAAAAGGAAGCCGTTGATGCTCTGAAACAAAAGTTCCCAGTTGTAAGTTCACTAACTCGTCTACATTCGAATGAATCATA</canonical>
            <polymorphic>ATTCTATCTCAAAAATGAGAAATCATTAAGCTAAAAGAACTGAAGTTTTTCTTACAATGAAACAGTGATTCTTCCTTACAGCTCTATTCATCGTATAAAGGGATCTGTGTCGTCTATGAAAATAGATATTTTCAAAACAAAGTGTCCATTTGAATAATCTGAATAAAAATAGTTATTTTAAGGATATAATCCGGTTGATGGTGTCTGAAACAAGAAACAATAACCGTATAAAAAGAACTTCAGATGGTGTGGATCGTATCTTTTCTCGTTTCTATTTTCTACAATCTCATCTGAAAATTCAGTTTTCCGTCATGTGTTCATCCAAAGTTGCCATTGCTCTGATTGCTTCCCTTGCCTTCTCTTCGGCTCTTCCAATTCTTGATGGAATAATCGGAGGAGGTGATAATGGAGGAATTGGAGGAGTTGTTGGTGGAGGAGACGGTGGTTTAGGAGGAATCATTGGAGGAGGGAATGGAGGAGGAATTGGTGGAATTGTTGGWGATCTTCTTGGAGGAGATCAAGATGTCCTCCAAAATCTTTTGAGTGTTCTTGGTGGAAATCCAGGTGGATTGGGATTACCTATTCTCGGAAATATCACTGAAATTCCATCATTTTTGACTGATATCCTCGGAGATCTTCCTGAAGAAACTATTCAAAAAATCACTGATCTTCTTGGAGAAGATCTTCCAATCAGTGAACTCCTCTCCCGACTCGATGCTCTGCTCCCGGAGGGTGTTCTTGAGGTGAGTCAGAAATCTGATCTATTTTTTGGTAAATGTGAAATTCAGCAACTCCTTGCCACAGTCGCCGATCTTGTCTCCAAACTTTTGGCTGCAATTAGTAAAGTCCTCAGTAACCTTCAATCAGTATTCGAGCAATTGTCTACCATTCTGAACAATAAGGATCTAACACTTGAGAAACAAAAGGAAGCCGTTGATGCTCTGAAACAAAAGTTCCCAGTTGTAAGTTCACTAACTCGTCTACATTCGAATGAATCATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>110 86 67 66 65 60 59 46 45 45 42 39 35 34 33 30 30 29 21 12 12 12 11 9 2</canonical_bands>
                <polymorphic_bands>110 86 67 66 65 60 59 57 46 45 42 39 35 34 33 30 30 29 21 12 12 11 9 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAATCGGAGGAGGTGATAAT</pcr_primer_p1>
		<pcr_primer_p2>GAGGATATCAGTCAAAAATGATG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AATAATCGGAGGAGGTGATAATGGAGGAATTGGAGGAGTTGTTGGTGGAGGAGACGGTGGTTTAGGAGGAATCATTGGAGGAGGGAATGGAGGAGGAATTGGTGGAATTGTTGGTGATCTTCTTGGAGGAGATCAAGATGTCCTCCAAAATCTTTTGAGTGTTCTTGGTGGAAATCCAGGTGGATTGGGATTACCTATTCTCGGAAATATCACTGAAATTCCATCATTTTTGACTGATATCCTC</canonical_amplicon>
		<polymorphic_amplicon>AATAATCGGAGGAGGTGATAATGGAGGAATTGGAGGAGTTGTTGGTGGAGGAGACGGTGGTTTAGGAGGAATCATTGGAGGAGGGAATGGAGGAGGAATTGGTGGAATTGTTGGWGATCTTCTTGGAGGAGATCAAGATGTCCTCCAAAATCTTTTGAGTGTTCTTGGTGGAAATCCAGGTGGATTGGGATTACCTATTCTCGGAAATATCACTGAAATTCCATCATTTTTGACTGATATCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37094</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>749056</contig_pos>
        <strand>+</strand>
        <context>TCTTGGAGGA[A/G]ATCAAGATGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGGGAATGGAGGAGGAATTGGTGGAATTGTTGGTGATCTTCTTGGAGGA</left_flank>
        <right_flank>ATCAAGATGTCCTCCAAAATCTTTTGAGTGTTCTTGGTGGAAATCCAGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAAATCATTAAGCTAAAAGAACTGAAGTTTTTCTTACAATGAAACAGTGATTCTTCCTTACAGCTCTATTCATCGTATAAAGGGATCTGTGTCGTCTATGAAAATAGATATTTTCAAAACAAAGTGTCCATTTGAATAATCTGAATAAAAATAGTTATTTTAAGGATATAATCCGGTTGATGGTGTCTGAAACAAGAAACAATAACCGTATAAAAAGAACTTCAGATGGTGTGGATCGTATCTTTTCTCGTTTCTATTTTCTACAATCTCATCTGAAAATTCAGTTTTCCGTCATGTGTTCATCCAAAGTTGCCATTGCTCTGATTGCTTCCCTTGCCTTCTCTTCGGCTCTTCCAATTCTTGATGGAATAATCGGAGGAGGTGATAATGGAGGAATTGGAGGAGTTGTTGGTGGAGGAGACGGTGGTTTAGGAGGAATCATTGGAGGAGGGAATGGAGGAGGAATTGGTGGAATTGTTGGTGATCTTCTTGGAGGAGATCAAGATGTCCTCCAAAATCTTTTGAGTGTTCTTGGTGGAAATCCAGGTGGATTGGGATTACCTATTCTCGGAAATATCACTGAAATTCCATCATTTTTGACTGATATCCTCGGAGATCTTCCTGAAGAAACTATTCAAAAAATCACTGATCTTCTTGGAGAAGATCTTCCAATCAGTGAACTCCTCTCCCGACTCGATGCTCTGCTCCCGGAGGGTGTTCTTGAGGTGAGTCAGAAATCTGATCTATTTTTTGGTAAATGTGAAATTCAGCAACTCCTTGCCACAGTCGCCGATCTTGTCTCCAAACTTTTGGCTGCAATTAGTAAAGTCCTCAGTAACCTTCAATCAGTATTCGAGCAATTGTCTACCATTCTGAACAATAAGGATCTAACACTTGAGAAACAAAAGGAAGCCGTTGATGCTCTGAAACAAAAGTTCCCAGTTGTAAGTTCACTAACTCGTCTACATTCGAATGAATCATATTTGTCAGGAAATCGA</canonical>
            <polymorphic>GAGAAATCATTAAGCTAAAAGAACTGAAGTTTTTCTTACAATGAAACAGTGATTCTTCCTTACAGCTCTATTCATCGTATAAAGGGATCTGTGTCGTCTATGAAAATAGATATTTTCAAAACAAAGTGTCCATTTGAATAATCTGAATAAAAATAGTTATTTTAAGGATATAATCCGGTTGATGGTGTCTGAAACAAGAAACAATAACCGTATAAAAAGAACTTCAGATGGTGTGGATCGTATCTTTTCTCGTTTCTATTTTCTACAATCTCATCTGAAAATTCAGTTTTCCGTCATGTGTTCATCCAAAGTTGCCATTGCTCTGATTGCTTCCCTTGCCTTCTCTTCGGCTCTTCCAATTCTTGATGGAATAATCGGAGGAGGTGATAATGGAGGAATTGGAGGAGTTGTTGGTGGAGGAGACGGTGGTTTAGGAGGAATCATTGGAGGAGGGAATGGAGGAGGAATTGGTGGAATTGTTGGTGATCTTCTTGGAGGARATCAAGATGTCCTCCAAAATCTTTTGAGTGTTCTTGGTGGAAATCCAGGTGGATTGGGATTACCTATTCTCGGAAATATCACTGAAATTCCATCATTTTTGACTGATATCCTCGGAGATCTTCCTGAAGAAACTATTCAAAAAATCACTGATCTTCTTGGAGAAGATCTTCCAATCAGTGAACTCCTCTCCCGACTCGATGCTCTGCTCCCGGAGGGTGTTCTTGAGGTGAGTCAGAAATCTGATCTATTTTTTGGTAAATGTGAAATTCAGCAACTCCTTGCCACAGTCGCCGATCTTGTCTCCAAACTTTTGGCTGCAATTAGTAAAGTCCTCAGTAACCTTCAATCAGTATTCGAGCAATTGTCTACCATTCTGAACAATAAGGATCTAACACTTGAGAAACAAAAGGAAGCCGTTGATGCTCTGAAACAAAAGTTCCCAGTTGTAAGTTCACTAACTCGTCTACATTCGAATGAATCATATTTGTCAGGAAATCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>249 150 117 114 93 85 78 51 33 15 15</canonical_bands>
                <polymorphic_bands>249 150 132 114 93 85 78 51 33 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATAATCGGAGGAGGTGATAAT</pcr_primer_p1>
		<pcr_primer_p2>GAGGATATCAGTCAAAAATGATG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AATAATCGGAGGAGGTGATAATGGAGGAATTGGAGGAGTTGTTGGTGGAGGAGACGGTGGTTTAGGAGGAATCATTGGAGGAGGGAATGGAGGAGGAATTGGTGGAATTGTTGGTGATCTTCTTGGAGGAGATCAAGATGTCCTCCAAAATCTTTTGAGTGTTCTTGGTGGAAATCCAGGTGGATTGGGATTACCTATTCTCGGAAATATCACTGAAATTCCATCATTTTTGACTGATATCCTC</canonical_amplicon>
		<polymorphic_amplicon>AATAATCGGAGGAGGTGATAATGGAGGAATTGGAGGAGTTGTTGGTGGAGGAGACGGTGGTTTAGGAGGAATCATTGGAGGAGGGAATGGAGGAGGAATTGGTGGAATTGTTGGTGATCTTCTTGGAGGARATCAAGATGTCCTCCAAAATCTTTTGAGTGTTCTTGGTGGAAATCCAGGTGGATTGGGATTACCTATTCTCGGAAATATCACTGAAATTCCATCATTTTTGACTGATATCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37095</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>751940</contig_pos>
        <strand>+</strand>
        <context>TCCAAAGTTG[C/T]CWTTGCTCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTTTAAATATTTAAAGCTTTTTCAGTCATGTGTTCATCCAAAGTTG</left_flank>
        <right_flank>CTTTGCTCTCATTGCTTCCCTTGCCCTTGCTTCGGCTCTTCCTGATCTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTCAGATTATTCAAATGGACACTTTGTTTTGAAAATATCTATTTTCATAGACGACACAGATCCCTTTATACGATGAATAGAGCTGTAAGGAAGAATCACTGTTTCATTGTAAGAAAAACTTCAGTTCTTTTAGCTTAATGATTTCTCATTTTTGAGATAGAATACACTCAATATCTGGAAGGATTCTACTATTGATAGTTGGACAACTGTTTTATGTAAATTCGAAACTGATACAAAATGATGATAGAGTGACCGTCTGGTGTTCGGAGATCATCTGTTTTGAATAAGTTTCTAGTATGAATAAAGTTAATAAAATGCTCAAAAATCAAATTTGTGTTTTGAAAATATTGGATTCTGACAAAGATCTTCCTGTTACACTAGGTATAAAATGGACCGTCGATTCACTGAAAAGTCATCCTGTTCCATTCATTTGGTTTTTAAAATCAGTTTTTTTTAAATATTTAAAGCTTTTTCAGTCATGTGTTCATCCAAAGTTGCCTTTGCTCTCATTGCTTCCCTTGCCCTTGCTTCGGCTCTTCCTGATCTCGGATCAATTATCGGAGGAGGAGAAAACGGAGGAATTGGGGGTGTTGTTGGAGGAAGCGACGGTGGTTTAGGAGGAATCATTGGAGGAGGAAATGGAGAAGGAATCGGTGGAATTGTGGGAGATCTTCTTGGAGGAAACCAAGATGTTCTTCAAAATCTTTTGAGTGTTCTTGGTGGAAATCCAGGTGGATTGGGATTACCTATTCTCGGGAATATCACTGAAATTCCATCATTTTTGACTGATATCCTCGGAGATCTTCCTGAAGAAACTATTCAAAAAATTACTGATCTTCTTGGAGAAGATCTTCCAATCAGTGAACTCCTCTCCCGACTCGATGCTCTGCTCCCGGAGGGTGTTCTTGACGTGAGTCAGAAATCTGATATGTTTTTTGATAATTTGAAATTCAGCAACTCTTGGCTACAGTCACCGATCTTGTCTCTAAACTTTTGGC</canonical>
            <polymorphic>TATTCAGATTATTCAAATGGACACTTTGTTTTGAAAATATCTATTTTCATAGACGACACAGATCCCTTTATACGATGAATAGAGCTGTAAGGAAGAATCACTGTTTCATTGTAAGAAAAACTTCAGTTCTTTTAGCTTAATGATTTCTCATTTTTGAGATAGAATACACTCAATATCTGGAAGGATTCTACTATTGATAGTTGGACAACTGTTTTATGTAAATTCGAAACTGATACAAAATGATGATAGAGTGACCGTCTGGTGTTCGGAGATCATCTGTTTTGAATAAGTTTCTAGTATGAATAAAGTTAATAAAATGCTCAAAAATCAAATTTGTGTTTTGAAAATATTGGATTCTGACAAAGATCTTCCTGTTACACTAGGTATAAAATGGACCGTCGATTCACTGAAAAGTCATCCTGTTCCATTCATTTGGTTTTTAAAATCAGTTTTTTTTAAATATTTAAAGCTTTTTCAGTCATGTGTTCATCCAAAGTTGYCTTTGCTCTCATTGCTTCCCTTGCCCTTGCTTCGGCTCTTCCTGATCTCGGATCAATTATCGGAGGAGGAGAAAACGGAGGAATTGGGGGTGTTGTTGGAGGAAGCGACGGTGGTTTAGGAGGAATCATTGGAGGAGGAAATGGAGAAGGAATCGGTGGAATTGTGGGAGATCTTCTTGGAGGAAACCAAGATGTTCTTCAAAATCTTTTGAGTGTTCTTGGTGGAAATCCAGGTGGATTGGGATTACCTATTCTCGGGAATATCACTGAAATTCCATCATTTTTGACTGATATCCTCGGAGATCTTCCTGAAGAAACTATTCAAAAAATTACTGATCTTCTTGGAGAAGATCTTCCAATCAGTGAACTCCTCTCCCGACTCGATGCTCTGCTCCCGGAGGGTGTTCTTGACGTGAGTCAGAAATCTGATATGTTTTTTGATAATTTGAAATTCAGCAACTCTTGGCTACAGTCACCGATCTTGTCTCTAAACTTTTGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGTTTTGAAAATATTGGATTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTCCTCCTCCGATAAT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TGTGTTTTGAAAATATTGGATTCTGACAAAGATCTTCCTGTTACACTAGGTATAAAATGGACCGTCGATTCACTGAAAAGTCATCCTGTTCCATTCATTTGGTTTTTAAAATCAGTTTTTTTTAAATATTTAAAGCTTTTTCAGTCATGTGTTCATCCAAAGTTGCCTTTGCTCTCATTGCTTCCCTTGCCCTTGCTTCGGCTCTTCCTGATCTCGGATCAATTATCGGAGGAGGAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGTGTTTTGAAAATATTGGATTCTGACAAAGATCTTCCTGTTACACTAGGTATAAAATGGACCGTCGATTCACTGAAAAGTCATCCTGTTCCATTCATTTGGTTTTTAAAATCAGTTTTTTTTAAATATTTAAAGCTTTTTCAGTCATGTGTTCATCCAAAGTTGYCTTTGCTCTCATTGCTTCCCTTGCCCTTGCTTCGGCTCTTCCTGATCTCGGATCAATTATCGGAGGAGGAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37096</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>751942</contig_pos>
        <strand>+</strand>
        <context>CAAAGTTGYC[A/T]TTGCTCTCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTTAAATATTTAAAGCTTTTTCAGTCATGTGTTCATCCAAAGTTGCC</left_flank>
        <right_flank>TTGCTCTCATTGCTTCCCTTGCCCTTGCTTCGGCTCTTCCTGATCTCGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAGATTATTCAAATGGACACTTTGTTTTGAAAATATCTATTTTCATAGACGACACAGATCCCTTTATACGATGAATAGAGCTGTAAGGAAGAATCACTGTTTCATTGTAAGAAAAACTTCAGTTCTTTTAGCTTAATGATTTCTCATTTTTGAGATAGAATACACTCAATATCTGGAAGGATTCTACTATTGATAGTTGGACAACTGTTTTATGTAAATTCGAAACTGATACAAAATGATGATAGAGTGACCGTCTGGTGTTCGGAGATCATCTGTTTTGAATAAGTTTCTAGTATGAATAAAGTTAATAAAATGCTCAAAAATCAAATTTGTGTTTTGAAAATATTGGATTCTGACAAAGATCTTCCTGTTACACTAGGTATAAAATGGACCGTCGATTCACTGAAAAGTCATCCTGTTCCATTCATTTGGTTTTTAAAATCAGTTTTTTTTAAATATTTAAAGCTTTTTCAGTCATGTGTTCATCCAAAGTTGCCTTTGCTCTCATTGCTTCCCTTGCCCTTGCTTCGGCTCTTCCTGATCTCGGATCAATTATCGGAGGAGGAGAAAACGGAGGAATTGGGGGTGTTGTTGGAGGAAGCGACGGTGGTTTAGGAGGAATCATTGGAGGAGGAAATGGAGAAGGAATCGGTGGAATTGTGGGAGATCTTCTTGGAGGAAACCAAGATGTTCTTCAAAATCTTTTGAGTGTTCTTGGTGGAAATCCAGGTGGATTGGGATTACCTATTCTCGGGAATATCACTGAAATTCCATCATTTTTGACTGATATCCTCGGAGATCTTCCTGAAGAAACTATTCAAAAAATTACTGATCTTCTTGGAGAAGATCTTCCAATCAGTGAACTCCTCTCCCGACTCGATGCTCTGCTCCCGGAGGGTGTTCTTGACGTGAGTCAGAAATCTGATATGTTTTTTGATAATTTGAAATTCAGCAACTCTTGGCTACAGTCACCGATCTTGTCTCTAAACTTTTGGCTG</canonical>
            <polymorphic>TTCAGATTATTCAAATGGACACTTTGTTTTGAAAATATCTATTTTCATAGACGACACAGATCCCTTTATACGATGAATAGAGCTGTAAGGAAGAATCACTGTTTCATTGTAAGAAAAACTTCAGTTCTTTTAGCTTAATGATTTCTCATTTTTGAGATAGAATACACTCAATATCTGGAAGGATTCTACTATTGATAGTTGGACAACTGTTTTATGTAAATTCGAAACTGATACAAAATGATGATAGAGTGACCGTCTGGTGTTCGGAGATCATCTGTTTTGAATAAGTTTCTAGTATGAATAAAGTTAATAAAATGCTCAAAAATCAAATTTGTGTTTTGAAAATATTGGATTCTGACAAAGATCTTCCTGTTACACTAGGTATAAAATGGACCGTCGATTCACTGAAAAGTCATCCTGTTCCATTCATTTGGTTTTTAAAATCAGTTTTTTTTAAATATTTAAAGCTTTTTCAGTCATGTGTTCATCCAAAGTTGCCWTTGCTCTCATTGCTTCCCTTGCCCTTGCTTCGGCTCTTCCTGATCTCGGATCAATTATCGGAGGAGGAGAAAACGGAGGAATTGGGGGTGTTGTTGGAGGAAGCGACGGTGGTTTAGGAGGAATCATTGGAGGAGGAAATGGAGAAGGAATCGGTGGAATTGTGGGAGATCTTCTTGGAGGAAACCAAGATGTTCTTCAAAATCTTTTGAGTGTTCTTGGTGGAAATCCAGGTGGATTGGGATTACCTATTCTCGGGAATATCACTGAAATTCCATCATTTTTGACTGATATCCTCGGAGATCTTCCTGAAGAAACTATTCAAAAAATTACTGATCTTCTTGGAGAAGATCTTCCAATCAGTGAACTCCTCTCCCGACTCGATGCTCTGCTCCCGGAGGGTGTTCTTGACGTGAGTCAGAAATCTGATATGTTTTTTGATAATTTGAAATTCAGCAACTCTTGGCTACAGTCACCGATCTTGTCTCTAAACTTTTGGCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGTTTTGAAAATATTGGATTC</pcr_primer_p1>
		<pcr_primer_p2>TTTTCTCCTCCTCCGATAAT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TGTGTTTTGAAAATATTGGATTCTGACAAAGATCTTCCTGTTACACTAGGTATAAAATGGACCGTCGATTCACTGAAAAGTCATCCTGTTCCATTCATTTGGTTTTTAAAATCAGTTTTTTTTAAATATTTAAAGCTTTTTCAGTCATGTGTTCATCCAAAGTTGCCTTTGCTCTCATTGCTTCCCTTGCCCTTGCTTCGGCTCTTCCTGATCTCGGATCAATTATCGGAGGAGGAGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGTGTTTTGAAAATATTGGATTCTGACAAAGATCTTCCTGTTACACTAGGTATAAAATGGACCGTCGATTCACTGAAAAGTCATCCTGTTCCATTCATTTGGTTTTTAAAATCAGTTTTTTTTAAATATTTAAAGCTTTTTCAGTCATGTGTTCATCCAAAGTTGCCWTTGCTCTCATTGCTTCCCTTGCCCTTGCTTCGGCTCTTCCTGATCTCGGATCAATTATCGGAGGAGGAGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37097</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>751962</contig_pos>
        <strand>+</strand>
        <context>TTGCTTCCCT[C/T]GCCCTTGCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCAGTCATGTGTTCATCCAAAGTTGCCTTTGCTCTCATTGCTTCCCT</left_flank>
        <right_flank>GCCCTTGCTTCGGCTCTTCCTGATCTCGGATCAATTATCGGAGGAGGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTGTTTTGAAAATATCTATTTTCATAGACGACACAGATCCCTTTATACGATGAATAGAGCTGTAAGGAAGAATCACTGTTTCATTGTAAGAAAAACTTCAGTTCTTTTAGCTTAATGATTTCTCATTTTTGAGATAGAATACACTCAATATCTGGAAGGATTCTACTATTGATAGTTGGACAACTGTTTTATGTAAATTCGAAACTGATACAAAATGATGATAGAGTGACCGTCTGGTGTTCGGAGATCATCTGTTTTGAATAAGTTTCTAGTATGAATAAAGTTAATAAAATGCTCAAAAATCAAATTTGTGTTTTGAAAATATTGGATTCTGACAAAGATCTTCCTGTTACACTAGGTATAAAATGGACCGTCGATTCACTGAAAAGTCATCCTGTTCCATTCATTTGGTTTTTAAAATCAGTTTTTTTTAAATATTTAAAGCTTTTTCAGTCATGTGTTCATCCAAAGTTGCCTTTGCTCTCATTGCTTCCCTTGCCCTTGCTTCGGCTCTTCCTGATCTCGGATCAATTATCGGAGGAGGAGAAAACGGAGGAATTGGGGGTGTTGTTGGAGGAAGCGACGGTGGTTTAGGAGGAATCATTGGAGGAGGAAATGGAGAAGGAATCGGTGGAATTGTGGGAGATCTTCTTGGAGGAAACCAAGATGTTCTTCAAAATCTTTTGAGTGTTCTTGGTGGAAATCCAGGTGGATTGGGATTACCTATTCTCGGGAATATCACTGAAATTCCATCATTTTTGACTGATATCCTCGGAGATCTTCCTGAAGAAACTATTCAAAAAATTACTGATCTTCTTGGAGAAGATCTTCCAATCAGTGAACTCCTCTCCCGACTCGATGCTCTGCTCCCGGAGGGTGTTCTTGACGTGAGTCAGAAATCTGATATGTTTTTTGATAATTTGAAATTCAGCAACTCTTGGCTACAGTCACCGATCTTGTCTCTAAACTTTTGGCTGCAATTAGTAAAGTCCTCAAC</canonical>
            <polymorphic>ACTTTGTTTTGAAAATATCTATTTTCATAGACGACACAGATCCCTTTATACGATGAATAGAGCTGTAAGGAAGAATCACTGTTTCATTGTAAGAAAAACTTCAGTTCTTTTAGCTTAATGATTTCTCATTTTTGAGATAGAATACACTCAATATCTGGAAGGATTCTACTATTGATAGTTGGACAACTGTTTTATGTAAATTCGAAACTGATACAAAATGATGATAGAGTGACCGTCTGGTGTTCGGAGATCATCTGTTTTGAATAAGTTTCTAGTATGAATAAAGTTAATAAAATGCTCAAAAATCAAATTTGTGTTTTGAAAATATTGGATTCTGACAAAGATCTTCCTGTTACACTAGGTATAAAATGGACCGTCGATTCACTGAAAAGTCATCCTGTTCCATTCATTTGGTTTTTAAAATCAGTTTTTTTTAAATATTTAAAGCTTTTTCAGTCATGTGTTCATCCAAAGTTGCCTTTGCTCTCATTGCTTCCCTYGCCCTTGCTTCGGCTCTTCCTGATCTCGGATCAATTATCGGAGGAGGAGAAAACGGAGGAATTGGGGGTGTTGTTGGAGGAAGCGACGGTGGTTTAGGAGGAATCATTGGAGGAGGAAATGGAGAAGGAATCGGTGGAATTGTGGGAGATCTTCTTGGAGGAAACCAAGATGTTCTTCAAAATCTTTTGAGTGTTCTTGGTGGAAATCCAGGTGGATTGGGATTACCTATTCTCGGGAATATCACTGAAATTCCATCATTTTTGACTGATATCCTCGGAGATCTTCCTGAAGAAACTATTCAAAAAATTACTGATCTTCTTGGAGAAGATCTTCCAATCAGTGAACTCCTCTCCCGACTCGATGCTCTGCTCCCGGAGGGTGTTCTTGACGTGAGTCAGAAATCTGATATGTTTTTTGATAATTTGAAATTCAGCAACTCTTGGCTACAGTCACCGATCTTGTCTCTAAACTTTTGGCTGCAATTAGTAAAGTCCTCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAAAGCTTTTTCAGTCATGTGT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAAGAACATCTTGGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTAAAGCTTTTTCAGTCATGTGTTCATCCAAAGTTGCCTTTGCTCTCATTGCTTCCCTTGCCCTTGCTTCGGCTCTTCCTGATCTCGGATCAATTATCGGAGGAGGAGAAAACGGAGGAATTGGGGGTGTTGTTGGAGGAAGCGACGGTGGTTTAGGAGGAATCATTGGAGGAGGAAATGGAGAAGGAATCGGTGGAATTGTGGGAGATCTTCTTGGAGGAAACCAAGATGTTCTTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTAAAGCTTTTTCAGTCATGTGTTCATCCAAAGTTGCCTTTGCTCTCATTGCTTCCCTYGCCCTTGCTTCGGCTCTTCCTGATCTCGGATCAATTATCGGAGGAGGAGAAAACGGAGGAATTGGGGGTGTTGTTGGAGGAAGCGACGGTGGTTTAGGAGGAATCATTGGAGGAGGAAATGGAGAAGGAATCGGTGGAATTGTGGGAGATCTTCTTGGAGGAAACCAAGATGTTCTTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37098</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>792599</contig_pos>
        <strand>+</strand>
        <context>CGACGGAGGG[A/T]TGACGGATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCCTTACCATAGACTTTTGGTCCCAAATTTCGAGAGGAGTCGACGGAGGG</left_flank>
        <right_flank>TGACGGATTGTGAATGGGAATTGCTAGGCAATGGAAAGAAGGAGACCCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGCGGGCAAAGAGAAAGCCGCTGCCCGATTGCATACATAAATTAGAGAACGACAGCTATACGCAGAGTGACATTAAGCGTTGCAGAGTGACGGTAGAATGCATACTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGATCCAAAAAAAGCTCAAAAAATGAAGTAGTTTGCTCTTGCCCCTTTAAGAATAATTTAACGAGGTATCTGTTCTCAATCTTCATTTTTCAGACAAAGATAATAAGAACCCTCACCTGCTTCCGGCTTACACCATGTAATCTCCACCACTGCCAACAGTAGAAATGAGAAGACGAGACGATTCTTTTTCGACGACATTCTGTCGTAGAAAATTCGAATTCAACTGAAAGTTTTTCTGTCGGCCGAAAAAGCTGGGCGTCGGAGGGACCTGCTAGGCAACACGGTACTTCAAACTACCCCCTTACCATAGACTTTTGGTCCCAAATTTCGAGAGGAGTCGACGGAGGGATGACGGATTGTGAATGGGAATTGCTAGGCAATGGAAAGAAGGAGACCCCGTTTTCTTTTCTGTGTTTTGTCCCCCTTTTCCGATGTTTCGATTTTTGATGCACATTCGTTTTATTATTTCCAATTATTTCAAATCAAATTAAAACAATATTACAATTAGACAGCATAATCAAGACTATACAGACAACACTAATTTCTAATTATAAAATAACAGGAATCAGTTTACTTTGGTTTTTTTTTTGTTTTCCACCACTGTTTTACTAGTTTCGCGGTCATTGGAATAATTTTAGTTGTGATTCGAACCTCCTTATTGATATTTTCGGCAATCTGGGCGTCCGTGAGTTTCTTATCTCTGAAAAGTTCCGCGGCCAAAAGACGGCATTGAGATTTTGAGTAAGCCATTTCGAGGGTTGGCCGAACAAGAGCAGGGTAGTTCATATAAATGCGAAGCTTTTCCGGATATTTCTTGCAGTTCAGATACCAGGTGATGAAAATGATAAT</canonical>
            <polymorphic>ACGCGGGCAAAGAGAAAGCCGCTGCCCGATTGCATACATAAATTAGAGAACGACAGCTATACGCAGAGTGACATTAAGCGTTGCAGAGTGACGGTAGAATGCATACTAGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCCCACCTTTAAGATCCAAAAAAAGCTCAAAAAATGAAGTAGTTTGCTCTTGCCCCTTTAAGAATAATTTAACGAGGTATCTGTTCTCAATCTTCATTTTTCAGACAAAGATAATAAGAACCCTCACCTGCTTCCGGCTTACACCATGTAATCTCCACCACTGCCAACAGTAGAAATGAGAAGACGAGACGATTCTTTTTCGACGACATTCTGTCGTAGAAAATTCGAATTCAACTGAAAGTTTTTCTGTCGGCCGAAAAAGCTGGGCGTCGGAGGGACCTGCTAGGCAACACGGTACTTCAAACTACCCCCTTACCATAGACTTTTGGTCCCAAATTTCGAGAGGAGTCGACGGAGGGWTGACGGATTGTGAATGGGAATTGCTAGGCAATGGAAAGAAGGAGACCCCGTTTTCTTTTCTGTGTTTTGTCCCCCTTTTCCGATGTTTCGATTTTTGATGCACATTCGTTTTATTATTTCCAATTATTTCAAATCAAATTAAAACAATATTACAATTAGACAGCATAATCAAGACTATACAGACAACACTAATTTCTAATTATAAAATAACAGGAATCAGTTTACTTTGGTTTTTTTTTTGTTTTCCACCACTGTTTTACTAGTTTCGCGGTCATTGGAATAATTTTAGTTGTGATTCGAACCTCCTTATTGATATTTTCGGCAATCTGGGCGTCCGTGAGTTTCTTATCTCTGAAAAGTTCCGCGGCCAAAAGACGGCATTGAGATTTTGAGTAAGCCATTTCGAGGGTTGGCCGAACAAGAGCAGGGTAGTTCATATAAATGCGAAGCTTTTCCGGATATTTCTTGCAGTTCAGATACCAGGTGATGAAAATGATAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGAATTCAACTGAAAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATAAAACGAATGTGCATCAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCGAATTCAACTGAAAGTTTTTCTGTCGGCCGAAAAAGCTGGGCGTCGGAGGGACCTGCTAGGCAACACGGTACTTCAAACTACCCCCTTACCATAGACTTTTGGTCCCAAATTTCGAGAGGAGTCGACGGAGGGATGACGGATTGTGAATGGGAATTGCTAGGCAATGGAAAGAAGGAGACCCCGTTTTCTTTTCTGTGTTTTGTCCCCCTTTTCCGATGTTTCGATTTTTGATGCACATTCGTTTTAT</canonical_amplicon>
		<polymorphic_amplicon>TCGAATTCAACTGAAAGTTTTTCTGTCGGCCGAAAAAGCTGGGCGTCGGAGGGACCTGCTAGGCAACACGGTACTTCAAACTACCCCCTTACCATAGACTTTTGGTCCCAAATTTCGAGAGGAGTCGACGGAGGGWTGACGGATTGTGAATGGGAATTGCTAGGCAATGGAAAGAAGGAGACCCCGTTTTCTTTTCTGTGTTTTGTCCCCCTTTTCCGATGTTTCGATTTTTGATGCACATTCGTTTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37099</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>793503</contig_pos>
        <strand>+</strand>
        <context>GTCCTGGCTT[A/T]TCCAACAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTAGACAGGGCCTCTTGATGAGTTTGACATCTTCTCACAGGTCCTGGCTT</left_flank>
        <right_flank>TCCAACAAAATGTGATATTTGTTGCTATTAGAATCGTCTGGAAGTTTTAT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGGTTGGCCGAACAAGAGCAGGGTAGTTCATATAAATGCGAAGCTTTTCCGGATATTTCTTGCAGTTCAGATACCAGGTGATGAAAATGATAATACATTGCGGATAGACGTCTTCGAGGTTTCCTTCCAAGAACCATTGGATGTAGAAATGATGGGTTTCTGGAACATTTTACTCTATGAATTAGTATTTTATCGGCGCCTGAAACCCACCAGTCATATCAGCTACTTGCAATCTTGAAATGGTATTTTTCGTCATAAATTTGGGTTATCACTTTCACCAATTGGGCTGGATTCATCTCTTGGTGGCTAGCAATTTCGGCTTCTAGATTCGTTGGGTCCAGGAAATTGATTTTTGGTCGCTCCGGTACTCCTTTTTTGATACTTCGGACAGAAGAACCTAGAAAGTTGGTCCGAATGTTGTAGGGAGCGGCTGAGGAGCGCAAATGTGTAGACAGGGCCTCTTGATGAGTTTGACATCTTCTCACAGGTCCTGGCTTTTCCAACAAAATGTGATATTTGTTGCTATTAGAATCGTCTGGAAGTTTTATTGCTGTTGGCGGCGTCGGATTGCTCATTGATCGTAGAATGGGACTTGTCCGGTATATCACTTGGGATTGAGGGTCCCTCGGAAGTTGCGCATGCCAAGTTGAAAGCTGGTCTGGGGACTGCTGGGTCGGAGACACCATCGAGACATTTCCAGAATCATCAGATTCGAATTTCCGATTGTTCAGTGGGGAATCGTAGGCACTATACTGCTCCTGACCCATTTTGGGGGATCCTTGGCGTTGAGGAAACAGTTGAGGATACTGTGTCATCAGTAAGCAAAGTTGATCAGTTGTGACGTAGGGAATTGGGGAGGCTGAAGCAAGATAATGATATTGTGTAGAAGAATATTTGAAAAGCACCTCGACCCGTCAGATTTATGCCTGCACTCCGGTTCGCCTGCTGGCATTTTTGTACCGCTAGTTGAAACATTGCATACTTTAGCCTGGGAGATG</canonical>
            <polymorphic>GAGGGTTGGCCGAACAAGAGCAGGGTAGTTCATATAAATGCGAAGCTTTTCCGGATATTTCTTGCAGTTCAGATACCAGGTGATGAAAATGATAATACATTGCGGATAGACGTCTTCGAGGTTTCCTTCCAAGAACCATTGGATGTAGAAATGATGGGTTTCTGGAACATTTTACTCTATGAATTAGTATTTTATCGGCGCCTGAAACCCACCAGTCATATCAGCTACTTGCAATCTTGAAATGGTATTTTTCGTCATAAATTTGGGTTATCACTTTCACCAATTGGGCTGGATTCATCTCTTGGTGGCTAGCAATTTCGGCTTCTAGATTCGTTGGGTCCAGGAAATTGATTTTTGGTCGCTCCGGTACTCCTTTTTTGATACTTCGGACAGAAGAACCTAGAAAGTTGGTCCGAATGTTGTAGGGAGCGGCTGAGGAGCGCAAATGTGTAGACAGGGCCTCTTGATGAGTTTGACATCTTCTCACAGGTCCTGGCTTWTCCAACAAAATGTGATATTTGTTGCTATTAGAATCGTCTGGAAGTTTTATTGCTGTTGGCGGCGTCGGATTGCTCATTGATCGTAGAATGGGACTTGTCCGGTATATCACTTGGGATTGAGGGTCCCTCGGAAGTTGCGCATGCCAAGTTGAAAGCTGGTCTGGGGACTGCTGGGTCGGAGACACCATCGAGACATTTCCAGAATCATCAGATTCGAATTTCCGATTGTTCAGTGGGGAATCGTAGGCACTATACTGCTCCTGACCCATTTTGGGGGATCCTTGGCGTTGAGGAAACAGTTGAGGATACTGTGTCATCAGTAAGCAAAGTTGATCAGTTGTGACGTAGGGAATTGGGGAGGCTGAAGCAAGATAATGATATTGTGTAGAAGAATATTTGAAAAGCACCTCGACCCGTCAGATTTATGCCTGCACTCCGGTTCGCCTGCTGGCATTTTTGTACCGCTAGTTGAAACATTGCATACTTTAGCCTGGGAGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAATTTCGGCTTCTAGATT</pcr_primer_p1>
		<pcr_primer_p2>AACAGCAATAAAACTTCCAGAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GCAATTTCGGCTTCTAGATTCGTTGGGTCCAGGAAATTGATTTTTGGTCGCTCCGGTACTCCTTTTTTGATACTTCGGACAGAAGAACCTAGAAAGTTGGTCCGAATGTTGTAGGGAGCGGCTGAGGAGCGCAAATGTGTAGACAGGGCCTCTTGATGAGTTTGACATCTTCTCACAGGTCCTGGCTTTTCCAACAAAATGTGATATTTGTTGCTATTAGAATCGTCTGGAAGTTTTATTGCTGTT</canonical_amplicon>
		<polymorphic_amplicon>GCAATTTCGGCTTCTAGATTCGTTGGGTCCAGGAAATTGATTTTTGGTCGCTCCGGTACTCCTTTTTTGATACTTCGGACAGAAGAACCTAGAAAGTTGGTCCGAATGTTGTAGGGAGCGGCTGAGGAGCGCAAATGTGTAGACAGGGCCTCTTGATGAGTTTGACATCTTCTCACAGGTCCTGGCTTWTCCAACAAAATGTGATATTTGTTGCTATTAGAATCGTCTGGAAGTTTTATTGCTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37100</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>793618</contig_pos>
        <strand>+</strand>
        <context>TATCACTTGG[A/G]ATTGAGGGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGGATTGCTCATTGATCGTAGAATGGGACTTGTCCGGTATATCACTTGG</left_flank>
        <right_flank>ATTGAGGGTCCCTCGGAAGTTGCGCATGCCAAGTTGAAAGCTGGTCTGGG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGAGGTTTCCTTCCAAGAACCATTGGATGTAGAAATGATGGGTTTCTGGAACATTTTACTCTATGAATTAGTATTTTATCGGCGCCTGAAACCCACCAGTCATATCAGCTACTTGCAATCTTGAAATGGTATTTTTCGTCATAAATTTGGGTTATCACTTTCACCAATTGGGCTGGATTCATCTCTTGGTGGCTAGCAATTTCGGCTTCTAGATTCGTTGGGTCCAGGAAATTGATTTTTGGTCGCTCCGGTACTCCTTTTTTGATACTTCGGACAGAAGAACCTAGAAAGTTGGTCCGAATGTTGTAGGGAGCGGCTGAGGAGCGCAAATGTGTAGACAGGGCCTCTTGATGAGTTTGACATCTTCTCACAGGTCCTGGCTTTTCCAACAAAATGTGATATTTGTTGCTATTAGAATCGTCTGGAAGTTTTATTGCTGTTGGCGGCGTCGGATTGCTCATTGATCGTAGAATGGGACTTGTCCGGTATATCACTTGGGATTGAGGGTCCCTCGGAAGTTGCGCATGCCAAGTTGAAAGCTGGTCTGGGGACTGCTGGGTCGGAGACACCATCGAGACATTTCCAGAATCATCAGATTCGAATTTCCGATTGTTCAGTGGGGAATCGTAGGCACTATACTGCTCCTGACCCATTTTGGGGGATCCTTGGCGTTGAGGAAACAGTTGAGGATACTGTGTCATCAGTAAGCAAAGTTGATCAGTTGTGACGTAGGGAATTGGGGAGGCTGAAGCAAGATAATGATATTGTGTAGAAGAATATTTGAAAAGCACCTCGACCCGTCAGATTTATGCCTGCACTCCGGTTCGCCTGCTGGCATTTTTGTACCGCTAGTTGAAACATTGCATACTTTAGCCTGGGAGATGGTGTATTTCGAGCAATCTGGGTATTTTGATTTTGATTTACAACCAGGGCATTATGGGGCTGATATCGATTGGTTGTCTGATTCGAGGTTCCTATAACTTGAGATTAGTCGCTGGA</canonical>
            <polymorphic>TCGAGGTTTCCTTCCAAGAACCATTGGATGTAGAAATGATGGGTTTCTGGAACATTTTACTCTATGAATTAGTATTTTATCGGCGCCTGAAACCCACCAGTCATATCAGCTACTTGCAATCTTGAAATGGTATTTTTCGTCATAAATTTGGGTTATCACTTTCACCAATTGGGCTGGATTCATCTCTTGGTGGCTAGCAATTTCGGCTTCTAGATTCGTTGGGTCCAGGAAATTGATTTTTGGTCGCTCCGGTACTCCTTTTTTGATACTTCGGACAGAAGAACCTAGAAAGTTGGTCCGAATGTTGTAGGGAGCGGCTGAGGAGCGCAAATGTGTAGACAGGGCCTCTTGATGAGTTTGACATCTTCTCACAGGTCCTGGCTTTTCCAACAAAATGTGATATTTGTTGCTATTAGAATCGTCTGGAAGTTTTATTGCTGTTGGCGGCGTCGGATTGCTCATTGATCGTAGAATGGGACTTGTCCGGTATATCACTTGGRATTGAGGGTCCCTCGGAAGTTGCGCATGCCAAGTTGAAAGCTGGTCTGGGGACTGCTGGGTCGGAGACACCATCGAGACATTTCCAGAATCATCAGATTCGAATTTCCGATTGTTCAGTGGGGAATCGTAGGCACTATACTGCTCCTGACCCATTTTGGGGGATCCTTGGCGTTGAGGAAACAGTTGAGGATACTGTGTCATCAGTAAGCAAAGTTGATCAGTTGTGACGTAGGGAATTGGGGAGGCTGAAGCAAGATAATGATATTGTGTAGAAGAATATTTGAAAAGCACCTCGACCCGTCAGATTTATGCCTGCACTCCGGTTCGCCTGCTGGCATTTTTGTACCGCTAGTTGAAACATTGCATACTTTAGCCTGGGAGATGGTGTATTTCGAGCAATCTGGGTATTTTGATTTTGATTTACAACCAGGGCATTATGGGGCTGATATCGATTGGTTGTCTGATTCGAGGTTCCTATAACTTGAGATTAGTCGCTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTATTAGAATCGTCTGGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>AATGGGTCAGGAGCAGTATAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GCTATTAGAATCGTCTGGAAGTTTTATTGCTGTTGGCGGCGTCGGATTGCTCATTGATCGTAGAATGGGACTTGTCCGGTATATCACTTGGGATTGAGGGTCCCTCGGAAGTTGCGCATGCCAAGTTGAAAGCTGGTCTGGGGACTGCTGGGTCGGAGACACCATCGAGACATTTCCAGAATCATCAGATTCGAATTTCCGATTGTTCAGTGGGGAATCGTAGGCACTATACTGCTCCTGACCCATT</canonical_amplicon>
		<polymorphic_amplicon>GCTATTAGAATCGTCTGGAAGTTTTATTGCTGTTGGCGGCGTCGGATTGCTCATTGATCGTAGAATGGGACTTGTCCGGTATATCACTTGGRATTGAGGGTCCCTCGGAAGTTGCGCATGCCAAGTTGAAAGCTGGTCTGGGGACTGCTGGGTCGGAGACACCATCGAGACATTTCCAGAATCATCAGATTCGAATTTCCGATTGTTCAGTGGGGAATCGTAGGCACTATACTGCTCCTGACCCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37101</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>793658</contig_pos>
        <strand>+</strand>
        <context>CAAGTTGAAA[C/G]CTGGTCTGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TATCACTTGGGATTGAGGGTCCCTCGGAAGTTGCGCATGCCAAGTTGAAA</left_flank>
        <right_flank>CTGGTCTGGGGACTGCTGGGTCGGAGACACCATCGAGACATTTCCAGAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGTTTCTGGAACATTTTACTCTATGAATTAGTATTTTATCGGCGCCTGAAACCCACCAGTCATATCAGCTACTTGCAATCTTGAAATGGTATTTTTCGTCATAAATTTGGGTTATCACTTTCACCAATTGGGCTGGATTCATCTCTTGGTGGCTAGCAATTTCGGCTTCTAGATTCGTTGGGTCCAGGAAATTGATTTTTGGTCGCTCCGGTACTCCTTTTTTGATACTTCGGACAGAAGAACCTAGAAAGTTGGTCCGAATGTTGTAGGGAGCGGCTGAGGAGCGCAAATGTGTAGACAGGGCCTCTTGATGAGTTTGACATCTTCTCACAGGTCCTGGCTTTTCCAACAAAATGTGATATTTGTTGCTATTAGAATCGTCTGGAAGTTTTATTGCTGTTGGCGGCGTCGGATTGCTCATTGATCGTAGAATGGGACTTGTCCGGTATATCACTTGGGATTGAGGGTCCCTCGGAAGTTGCGCATGCCAAGTTGAAAGCTGGTCTGGGGACTGCTGGGTCGGAGACACCATCGAGACATTTCCAGAATCATCAGATTCGAATTTCCGATTGTTCAGTGGGGAATCGTAGGCACTATACTGCTCCTGACCCATTTTGGGGGATCCTTGGCGTTGAGGAAACAGTTGAGGATACTGTGTCATCAGTAAGCAAAGTTGATCAGTTGTGACGTAGGGAATTGGGGAGGCTGAAGCAAGATAATGATATTGTGTAGAAGAATATTTGAAAAGCACCTCGACCCGTCAGATTTATGCCTGCACTCCGGTTCGCCTGCTGGCATTTTTGTACCGCTAGTTGAAACATTGCATACTTTAGCCTGGGAGATGGTGTATTTCGAGCAATCTGGGTATTTTGATTTTGATTTACAACCAGGGCATTATGGGGCTGATATCGATTGGTTGTCTGATTCGAGGTTCCTATAACTTGAGATTAGTCGCTGGAATGGGATGCAATTTCCAAACTACCTTGCTCATTGGCCATT</canonical>
            <polymorphic>GGGTTTCTGGAACATTTTACTCTATGAATTAGTATTTTATCGGCGCCTGAAACCCACCAGTCATATCAGCTACTTGCAATCTTGAAATGGTATTTTTCGTCATAAATTTGGGTTATCACTTTCACCAATTGGGCTGGATTCATCTCTTGGTGGCTAGCAATTTCGGCTTCTAGATTCGTTGGGTCCAGGAAATTGATTTTTGGTCGCTCCGGTACTCCTTTTTTGATACTTCGGACAGAAGAACCTAGAAAGTTGGTCCGAATGTTGTAGGGAGCGGCTGAGGAGCGCAAATGTGTAGACAGGGCCTCTTGATGAGTTTGACATCTTCTCACAGGTCCTGGCTTTTCCAACAAAATGTGATATTTGTTGCTATTAGAATCGTCTGGAAGTTTTATTGCTGTTGGCGGCGTCGGATTGCTCATTGATCGTAGAATGGGACTTGTCCGGTATATCACTTGGGATTGAGGGTCCCTCGGAAGTTGCGCATGCCAAGTTGAAASCTGGTCTGGGGACTGCTGGGTCGGAGACACCATCGAGACATTTCCAGAATCATCAGATTCGAATTTCCGATTGTTCAGTGGGGAATCGTAGGCACTATACTGCTCCTGACCCATTTTGGGGGATCCTTGGCGTTGAGGAAACAGTTGAGGATACTGTGTCATCAGTAAGCAAAGTTGATCAGTTGTGACGTAGGGAATTGGGGAGGCTGAAGCAAGATAATGATATTGTGTAGAAGAATATTTGAAAAGCACCTCGACCCGTCAGATTTATGCCTGCACTCCGGTTCGCCTGCTGGCATTTTTGTACCGCTAGTTGAAACATTGCATACTTTAGCCTGGGAGATGGTGTATTTCGAGCAATCTGGGTATTTTGATTTTGATTTACAACCAGGGCATTATGGGGCTGATATCGATTGGTTGTCTGATTCGAGGTTCCTATAACTTGAGATTAGTCGCTGGAATGGGATGCAATTTCCAAACTACCTTGCTCATTGGCCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>500 431 69</canonical_bands>
                <polymorphic_bands>931 69</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>206 159 128 111 92 69 69 64 37 27 20 13 5</canonical_bands>
                <polymorphic_bands>365 128 111 92 69 69 64 37 27 20 13 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTTGTCCGGTATATCACTTG</pcr_primer_p1>
		<pcr_primer_p2>ACTGATCAACTTTGCTTACTGAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GACTTGTCCGGTATATCACTTGGGATTGAGGGTCCCTCGGAAGTTGCGCATGCCAAGTTGAAAGCTGGTCTGGGGACTGCTGGGTCGGAGACACCATCGAGACATTTCCAGAATCATCAGATTCGAATTTCCGATTGTTCAGTGGGGAATCGTAGGCACTATACTGCTCCTGACCCATTTTGGGGGATCCTTGGCGTTGAGGAAACAGTTGAGGATACTGTGTCATCAGTAAGCAAAGTTGATCAGT</canonical_amplicon>
		<polymorphic_amplicon>GACTTGTCCGGTATATCACTTGGGATTGAGGGTCCCTCGGAAGTTGCGCATGCCAAGTTGAAASCTGGTCTGGGGACTGCTGGGTCGGAGACACCATCGAGACATTTCCAGAATCATCAGATTCGAATTTCCGATTGTTCAGTGGGGAATCGTAGGCACTATACTGCTCCTGACCCATTTTGGGGGATCCTTGGCGTTGAGGAAACAGTTGAGGATACTGTGTCATCAGTAAGCAAAGTTGATCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37102</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>793687</contig_pos>
        <strand>+</strand>
        <context>GGTCGGAGAC[A/G]CCATCGAGAY</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTGCGCATGCCAAGTTGAAAGCTGGTCTGGGGACTGCTGGGTCGGAGAC</left_flank>
        <right_flank>CCATCGAGACATTTCCAGAATCATCAGATTCGAATTTCCGATTGTTCAGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGTATTTTATCGGCGCCTGAAACCCACCAGTCATATCAGCTACTTGCAATCTTGAAATGGTATTTTTCGTCATAAATTTGGGTTATCACTTTCACCAATTGGGCTGGATTCATCTCTTGGTGGCTAGCAATTTCGGCTTCTAGATTCGTTGGGTCCAGGAAATTGATTTTTGGTCGCTCCGGTACTCCTTTTTTGATACTTCGGACAGAAGAACCTAGAAAGTTGGTCCGAATGTTGTAGGGAGCGGCTGAGGAGCGCAAATGTGTAGACAGGGCCTCTTGATGAGTTTGACATCTTCTCACAGGTCCTGGCTTTTCCAACAAAATGTGATATTTGTTGCTATTAGAATCGTCTGGAAGTTTTATTGCTGTTGGCGGCGTCGGATTGCTCATTGATCGTAGAATGGGACTTGTCCGGTATATCACTTGGGATTGAGGGTCCCTCGGAAGTTGCGCATGCCAAGTTGAAAGCTGGTCTGGGGACTGCTGGGTCGGAGACACCATCGAGACATTTCCAGAATCATCAGATTCGAATTTCCGATTGTTCAGTGGGGAATCGTAGGCACTATACTGCTCCTGACCCATTTTGGGGGATCCTTGGCGTTGAGGAAACAGTTGAGGATACTGTGTCATCAGTAAGCAAAGTTGATCAGTTGTGACGTAGGGAATTGGGGAGGCTGAAGCAAGATAATGATATTGTGTAGAAGAATATTTGAAAAGCACCTCGACCCGTCAGATTTATGCCTGCACTCCGGTTCGCCTGCTGGCATTTTTGTACCGCTAGTTGAAACATTGCATACTTTAGCCTGGGAGATGGTGTATTTCGAGCAATCTGGGTATTTTGATTTTGATTTACAACCAGGGCATTATGGGGCTGATATCGATTGGTTGTCTGATTCGAGGTTCCTATAACTTGAGATTAGTCGCTGGAATGGGATGCAATTTCCAAACTACCTTGCTCATTGGCCATTTGTTGCAAAAGTTGGTTTGGAGTCATCAT</canonical>
            <polymorphic>TAGTATTTTATCGGCGCCTGAAACCCACCAGTCATATCAGCTACTTGCAATCTTGAAATGGTATTTTTCGTCATAAATTTGGGTTATCACTTTCACCAATTGGGCTGGATTCATCTCTTGGTGGCTAGCAATTTCGGCTTCTAGATTCGTTGGGTCCAGGAAATTGATTTTTGGTCGCTCCGGTACTCCTTTTTTGATACTTCGGACAGAAGAACCTAGAAAGTTGGTCCGAATGTTGTAGGGAGCGGCTGAGGAGCGCAAATGTGTAGACAGGGCCTCTTGATGAGTTTGACATCTTCTCACAGGTCCTGGCTTTTCCAACAAAATGTGATATTTGTTGCTATTAGAATCGTCTGGAAGTTTTATTGCTGTTGGCGGCGTCGGATTGCTCATTGATCGTAGAATGGGACTTGTCCGGTATATCACTTGGGATTGAGGGTCCCTCGGAAGTTGCGCATGCCAAGTTGAAAGCTGGTCTGGGGACTGCTGGGTCGGAGACRCCATCGAGACATTTCCAGAATCATCAGATTCGAATTTCCGATTGTTCAGTGGGGAATCGTAGGCACTATACTGCTCCTGACCCATTTTGGGGGATCCTTGGCGTTGAGGAAACAGTTGAGGATACTGTGTCATCAGTAAGCAAAGTTGATCAGTTGTGACGTAGGGAATTGGGGAGGCTGAAGCAAGATAATGATATTGTGTAGAAGAATATTTGAAAAGCACCTCGACCCGTCAGATTTATGCCTGCACTCCGGTTCGCCTGCTGGCATTTTTGTACCGCTAGTTGAAACATTGCATACTTTAGCCTGGGAGATGGTGTATTTCGAGCAATCTGGGTATTTTGATTTTGATTTACAACCAGGGCATTATGGGGCTGATATCGATTGGTTGTCTGATTCGAGGTTCCTATAACTTGAGATTAGTCGCTGGAATGGGATGCAATTTCCAAACTACCTTGCTCATTGGCCATTTGTTGCAAAAGTTGGTTTGGAGTCATCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>181 143 95 75 70 64 62 51 43 36 29 28 28 27 27 21 14 6</canonical_bands>
                <polymorphic_bands>181 143 126 95 70 64 62 43 36 29 28 28 27 27 21 14 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTTGTCCGGTATATCACTTG</pcr_primer_p1>
		<pcr_primer_p2>ACTGATCAACTTTGCTTACTGAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GACTTGTCCGGTATATCACTTGGGATTGAGGGTCCCTCGGAAGTTGCGCATGCCAAGTTGAAAGCTGGTCTGGGGACTGCTGGGTCGGAGACACCATCGAGACATTTCCAGAATCATCAGATTCGAATTTCCGATTGTTCAGTGGGGAATCGTAGGCACTATACTGCTCCTGACCCATTTTGGGGGATCCTTGGCGTTGAGGAAACAGTTGAGGATACTGTGTCATCAGTAAGCAAAGTTGATCAGT</canonical_amplicon>
		<polymorphic_amplicon>GACTTGTCCGGTATATCACTTGGGATTGAGGGTCCCTCGGAAGTTGCGCATGCCAAGTTGAAAGCTGGTCTGGGGACTGCTGGGTCGGAGACRCCATCGAGACATTTCCAGAATCATCAGATTCGAATTTCCGATTGTTCAGTGGGGAATCGTAGGCACTATACTGCTCCTGACCCATTTTGGGGGATCCTTGGCGTTGAGGAAACAGTTGAGGATACTGTGTCATCAGTAAGCAAAGTTGATCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37103</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>793697</contig_pos>
        <strand>+</strand>
        <context>RCCATCGAGA[C/T]ATTTCCAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAAGTTGAAAGCTGGTCTGGGGACTGCTGGGTCGGAGACACCATCGAGA</left_flank>
        <right_flank>ATTTCCAGAATCATCAGATTCGAATTTCCGATTGTTCAGTGGGGAATCGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGCGCCTGAAACCCACCAGTCATATCAGCTACTTGCAATCTTGAAATGGTATTTTTCGTCATAAATTTGGGTTATCACTTTCACCAATTGGGCTGGATTCATCTCTTGGTGGCTAGCAATTTCGGCTTCTAGATTCGTTGGGTCCAGGAAATTGATTTTTGGTCGCTCCGGTACTCCTTTTTTGATACTTCGGACAGAAGAACCTAGAAAGTTGGTCCGAATGTTGTAGGGAGCGGCTGAGGAGCGCAAATGTGTAGACAGGGCCTCTTGATGAGTTTGACATCTTCTCACAGGTCCTGGCTTTTCCAACAAAATGTGATATTTGTTGCTATTAGAATCGTCTGGAAGTTTTATTGCTGTTGGCGGCGTCGGATTGCTCATTGATCGTAGAATGGGACTTGTCCGGTATATCACTTGGGATTGAGGGTCCCTCGGAAGTTGCGCATGCCAAGTTGAAAGCTGGTCTGGGGACTGCTGGGTCGGAGACACCATCGAGACATTTCCAGAATCATCAGATTCGAATTTCCGATTGTTCAGTGGGGAATCGTAGGCACTATACTGCTCCTGACCCATTTTGGGGGATCCTTGGCGTTGAGGAAACAGTTGAGGATACTGTGTCATCAGTAAGCAAAGTTGATCAGTTGTGACGTAGGGAATTGGGGAGGCTGAAGCAAGATAATGATATTGTGTAGAAGAATATTTGAAAAGCACCTCGACCCGTCAGATTTATGCCTGCACTCCGGTTCGCCTGCTGGCATTTTTGTACCGCTAGTTGAAACATTGCATACTTTAGCCTGGGAGATGGTGTATTTCGAGCAATCTGGGTATTTTGATTTTGATTTACAACCAGGGCATTATGGGGCTGATATCGATTGGTTGTCTGATTCGAGGTTCCTATAACTTGAGATTAGTCGCTGGAATGGGATGCAATTTCCAAACTACCTTGCTCATTGGCCATTTGTTGCAAAAGTTGGTTTGGAGTCATCATTCGTTCATGT</canonical>
            <polymorphic>TCGGCGCCTGAAACCCACCAGTCATATCAGCTACTTGCAATCTTGAAATGGTATTTTTCGTCATAAATTTGGGTTATCACTTTCACCAATTGGGCTGGATTCATCTCTTGGTGGCTAGCAATTTCGGCTTCTAGATTCGTTGGGTCCAGGAAATTGATTTTTGGTCGCTCCGGTACTCCTTTTTTGATACTTCGGACAGAAGAACCTAGAAAGTTGGTCCGAATGTTGTAGGGAGCGGCTGAGGAGCGCAAATGTGTAGACAGGGCCTCTTGATGAGTTTGACATCTTCTCACAGGTCCTGGCTTTTCCAACAAAATGTGATATTTGTTGCTATTAGAATCGTCTGGAAGTTTTATTGCTGTTGGCGGCGTCGGATTGCTCATTGATCGTAGAATGGGACTTGTCCGGTATATCACTTGGGATTGAGGGTCCCTCGGAAGTTGCGCATGCCAAGTTGAAAGCTGGTCTGGGGACTGCTGGGTCGGAGACACCATCGAGAYATTTCCAGAATCATCAGATTCGAATTTCCGATTGTTCAGTGGGGAATCGTAGGCACTATACTGCTCCTGACCCATTTTGGGGGATCCTTGGCGTTGAGGAAACAGTTGAGGATACTGTGTCATCAGTAAGCAAAGTTGATCAGTTGTGACGTAGGGAATTGGGGAGGCTGAAGCAAGATAATGATATTGTGTAGAAGAATATTTGAAAAGCACCTCGACCCGTCAGATTTATGCCTGCACTCCGGTTCGCCTGCTGGCATTTTTGTACCGCTAGTTGAAACATTGCATACTTTAGCCTGGGAGATGGTGTATTTCGAGCAATCTGGGTATTTTGATTTTGATTTACAACCAGGGCATTATGGGGCTGATATCGATTGGTTGTCTGATTCGAGGTTCCTATAACTTGAGATTAGTCGCTGGAATGGGATGCAATTTCCAAACTACCTTGCTCATTGGCCATTTGTTGCAAAAGTTGGTTTGGAGTCATCATTCGTTCATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTTGTCCGGTATATCACTTG</pcr_primer_p1>
		<pcr_primer_p2>ACTGATCAACTTTGCTTACTGAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GACTTGTCCGGTATATCACTTGGGATTGAGGGTCCCTCGGAAGTTGCGCATGCCAAGTTGAAAGCTGGTCTGGGGACTGCTGGGTCGGAGACACCATCGAGACATTTCCAGAATCATCAGATTCGAATTTCCGATTGTTCAGTGGGGAATCGTAGGCACTATACTGCTCCTGACCCATTTTGGGGGATCCTTGGCGTTGAGGAAACAGTTGAGGATACTGTGTCATCAGTAAGCAAAGTTGATCAGT</canonical_amplicon>
		<polymorphic_amplicon>GACTTGTCCGGTATATCACTTGGGATTGAGGGTCCCTCGGAAGTTGCGCATGCCAAGTTGAAAGCTGGTCTGGGGACTGCTGGGTCGGAGACACCATCGAGAYATTTCCAGAATCATCAGATTCGAATTTCCGATTGTTCAGTGGGGAATCGTAGGCACTATACTGCTCCTGACCCATTTTGGGGGATCCTTGGCGTTGAGGAAACAGTTGAGGATACTGTGTCATCAGTAAGCAAAGTTGATCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37104</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>793725</contig_pos>
        <strand>+</strand>
        <context>ATTCGAATTT[C/T]CGATTGTTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGGTCGGAGACACCATCGAGACATTTCCAGAATCATCAGATTCGAATTT</left_flank>
        <right_flank>CGATTGTTCAGTGGGGAATCGTAGGCACTATACTGCTCCTGACCCATTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTACTTGCAATCTTGAAATGGTATTTTTCGTCATAAATTTGGGTTATCACTTTCACCAATTGGGCTGGATTCATCTCTTGGTGGCTAGCAATTTCGGCTTCTAGATTCGTTGGGTCCAGGAAATTGATTTTTGGTCGCTCCGGTACTCCTTTTTTGATACTTCGGACAGAAGAACCTAGAAAGTTGGTCCGAATGTTGTAGGGAGCGGCTGAGGAGCGCAAATGTGTAGACAGGGCCTCTTGATGAGTTTGACATCTTCTCACAGGTCCTGGCTTTTCCAACAAAATGTGATATTTGTTGCTATTAGAATCGTCTGGAAGTTTTATTGCTGTTGGCGGCGTCGGATTGCTCATTGATCGTAGAATGGGACTTGTCCGGTATATCACTTGGGATTGAGGGTCCCTCGGAAGTTGCGCATGCCAAGTTGAAAGCTGGTCTGGGGACTGCTGGGTCGGAGACACCATCGAGACATTTCCAGAATCATCAGATTCGAATTTCCGATTGTTCAGTGGGGAATCGTAGGCACTATACTGCTCCTGACCCATTTTGGGGGATCCTTGGCGTTGAGGAAACAGTTGAGGATACTGTGTCATCAGTAAGCAAAGTTGATCAGTTGTGACGTAGGGAATTGGGGAGGCTGAAGCAAGATAATGATATTGTGTAGAAGAATATTTGAAAAGCACCTCGACCCGTCAGATTTATGCCTGCACTCCGGTTCGCCTGCTGGCATTTTTGTACCGCTAGTTGAAACATTGCATACTTTAGCCTGGGAGATGGTGTATTTCGAGCAATCTGGGTATTTTGATTTTGATTTACAACCAGGGCATTATGGGGCTGATATCGATTGGTTGTCTGATTCGAGGTTCCTATAACTTGAGATTAGTCGCTGGAATGGGATGCAATTTCCAAACTACCTTGCTCATTGGCCATTTGTTGCAAAAGTTGGTTTGGAGTCATCATTCGTTCATGTTCGAGCTCACTATCAGAAGGAGTTTTGT</canonical>
            <polymorphic>AGCTACTTGCAATCTTGAAATGGTATTTTTCGTCATAAATTTGGGTTATCACTTTCACCAATTGGGCTGGATTCATCTCTTGGTGGCTAGCAATTTCGGCTTCTAGATTCGTTGGGTCCAGGAAATTGATTTTTGGTCGCTCCGGTACTCCTTTTTTGATACTTCGGACAGAAGAACCTAGAAAGTTGGTCCGAATGTTGTAGGGAGCGGCTGAGGAGCGCAAATGTGTAGACAGGGCCTCTTGATGAGTTTGACATCTTCTCACAGGTCCTGGCTTTTCCAACAAAATGTGATATTTGTTGCTATTAGAATCGTCTGGAAGTTTTATTGCTGTTGGCGGCGTCGGATTGCTCATTGATCGTAGAATGGGACTTGTCCGGTATATCACTTGGGATTGAGGGTCCCTCGGAAGTTGCGCATGCCAAGTTGAAAGCTGGTCTGGGGACTGCTGGGTCGGAGACACCATCGAGACATTTCCAGAATCATCAGATTCGAATTTYCGATTGTTCAGTGGGGAATCGTAGGCACTATACTGCTCCTGACCCATTTTGGGGGATCCTTGGCGTTGAGGAAACAGTTGAGGATACTGTGTCATCAGTAAGCAAAGTTGATCAGTTGTGACGTAGGGAATTGGGGAGGCTGAAGCAAGATAATGATATTGTGTAGAAGAATATTTGAAAAGCACCTCGACCCGTCAGATTTATGCCTGCACTCCGGTTCGCCTGCTGGCATTTTTGTACCGCTAGTTGAAACATTGCATACTTTAGCCTGGGAGATGGTGTATTTCGAGCAATCTGGGTATTTTGATTTTGATTTACAACCAGGGCATTATGGGGCTGATATCGATTGGTTGTCTGATTCGAGGTTCCTATAACTTGAGATTAGTCGCTGGAATGGGATGCAATTTCCAAACTACCTTGCTCATTGGCCATTTGTTGCAAAAGTTGGTTTGGAGTCATCATTCGTTCATGTTCGAGCTCACTATCAGAAGGAGTTTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>196 166 159 153 131 63 48 32 26 13 13</canonical_bands>
                <polymorphic_bands>209 166 159 153 131 63 48 32 26 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTTGTCCGGTATATCACTTG</pcr_primer_p1>
		<pcr_primer_p2>ACTGATCAACTTTGCTTACTGAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GACTTGTCCGGTATATCACTTGGGATTGAGGGTCCCTCGGAAGTTGCGCATGCCAAGTTGAAAGCTGGTCTGGGGACTGCTGGGTCGGAGACACCATCGAGACATTTCCAGAATCATCAGATTCGAATTTCCGATTGTTCAGTGGGGAATCGTAGGCACTATACTGCTCCTGACCCATTTTGGGGGATCCTTGGCGTTGAGGAAACAGTTGAGGATACTGTGTCATCAGTAAGCAAAGTTGATCAGT</canonical_amplicon>
		<polymorphic_amplicon>GACTTGTCCGGTATATCACTTGGGATTGAGGGTCCCTCGGAAGTTGCGCATGCCAAGTTGAAAGCTGGTCTGGGGACTGCTGGGTCGGAGACACCATCGAGACATTTCCAGAATCATCAGATTCGAATTTYCGATTGTTCAGTGGGGAATCGTAGGCACTATACTGCTCCTGACCCATTTTGGGGGATCCTTGGCGTTGAGGAAACAGTTGAGGATACTGTGTCATCAGTAAGCAAAGTTGATCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37105</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>793989</contig_pos>
        <strand>+</strand>
        <context>ATTGCATACT[G/T]TAGCCTGGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCGGTTCGCCTGCTGGCATTTTTGTACCGCTAGTTGAAACATTGCATACT</left_flank>
        <right_flank>TAGCCTGGGAGATGGTGTATTTCGAGCAATCTGGGTATTTTGATTTTGAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGGTCCTGGCTTTTCCAACAAAATGTGATATTTGTTGCTATTAGAATCGTCTGGAAGTTTTATTGCTGTTGGCGGCGTCGGATTGCTCATTGATCGTAGAATGGGACTTGTCCGGTATATCACTTGGGATTGAGGGTCCCTCGGAAGTTGCGCATGCCAAGTTGAAAGCTGGTCTGGGGACTGCTGGGTCGGAGACACCATCGAGACATTTCCAGAATCATCAGATTCGAATTTCCGATTGTTCAGTGGGGAATCGTAGGCACTATACTGCTCCTGACCCATTTTGGGGGATCCTTGGCGTTGAGGAAACAGTTGAGGATACTGTGTCATCAGTAAGCAAAGTTGATCAGTTGTGACGTAGGGAATTGGGGAGGCTGAAGCAAGATAATGATATTGTGTAGAAGAATATTTGAAAAGCACCTCGACCCGTCAGATTTATGCCTGCACTCCGGTTCGCCTGCTGGCATTTTTGTACCGCTAGTTGAAACATTGCATACTTTAGCCTGGGAGATGGTGTATTTCGAGCAATCTGGGTATTTTGATTTTGATTTACAACCAGGGCATTATGGGGCTGATATCGATTGGTTGTCTGATTCGAGGTTCCTATAACTTGAGATTAGTCGCTGGAATGGGATGCAATTTCCAAACTACCTTGCTCATTGGCCATTTGTTGCAAAAGTTGGTTTGGAGTCATCATTCGTTCATGTTCGAGCTCACTATCAGAAGGAGTTTTGTGTTGGTAATGCTGATTTTGTCCCATTGGCTGTTCCATGGGTCCGGCGGCGATGTTTCCAGAATTTTGAGCAGGCTTCATGAGGCCATGTTGCATTAGTCCCAAGTAGGTGTTGCAATCTGAACGTTTTTCAGTATGTAATCTTTTGACAGTCGAATACACAGTTTGAAACTTACCTTGTAAATACTGCTGATAGCTTCTTCCGTTGGTCATCTGACCTGGATTAAGAGTCGCCATATTCGCCGCGTATTGTTCACGAGACTGTG</canonical>
            <polymorphic>CAGGTCCTGGCTTTTCCAACAAAATGTGATATTTGTTGCTATTAGAATCGTCTGGAAGTTTTATTGCTGTTGGCGGCGTCGGATTGCTCATTGATCGTAGAATGGGACTTGTCCGGTATATCACTTGGGATTGAGGGTCCCTCGGAAGTTGCGCATGCCAAGTTGAAAGCTGGTCTGGGGACTGCTGGGTCGGAGACACCATCGAGACATTTCCAGAATCATCAGATTCGAATTTCCGATTGTTCAGTGGGGAATCGTAGGCACTATACTGCTCCTGACCCATTTTGGGGGATCCTTGGCGTTGAGGAAACAGTTGAGGATACTGTGTCATCAGTAAGCAAAGTTGATCAGTTGTGACGTAGGGAATTGGGGAGGCTGAAGCAAGATAATGATATTGTGTAGAAGAATATTTGAAAAGCACCTCGACCCGTCAGATTTATGCCTGCACTCCGGTTCGCCTGCTGGCATTTTTGTACCGCTAGTTGAAACATTGCATACTKTAGCCTGGGAGATGGTGTATTTCGAGCAATCTGGGTATTTTGATTTTGATTTACAACCAGGGCATTATGGGGCTGATATCGATTGGTTGTCTGATTCGAGGTTCCTATAACTTGAGATTAGTCGCTGGAATGGGATGCAATTTCCAAACTACCTTGCTCATTGGCCATTTGTTGCAAAAGTTGGTTTGGAGTCATCATTCGTTCATGTTCGAGCTCACTATCAGAAGGAGTTTTGTGTTGGTAATGCTGATTTTGTCCCATTGGCTGTTCCATGGGTCCGGCGGCGATGTTTCCAGAATTTTGAGCAGGCTTCATGAGGCCATGTTGCATTAGTCCCAAGTAGGTGTTGCAATCTGAACGTTTTTCAGTATGTAATCTTTTGACAGTCGAATACACAGTTTGAAACTTACCTTGTAAATACTGCTGATAGCTTCTTCCGTTGGTCATCTGACCTGGATTAAGAGTCGCCATATTCGCCGCGTATTGTTCACGAGACTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAGTTGAGGATACTGTGTCA</pcr_primer_p1>
		<pcr_primer_p2>TGGTTGTAAATCAAAATCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AACAGTTGAGGATACTGTGTCATCAGTAAGCAAAGTTGATCAGTTGTGACGTAGGGAATTGGGGAGGCTGAAGCAAGATAATGATATTGTGTAGAAGAATATTTGAAAAGCACCTCGACCCGTCAGATTTATGCCTGCACTCCGGTTCGCCTGCTGGCATTTTTGTACCGCTAGTTGAAACATTGCATACTTTAGCCTGGGAGATGGTGTATTTCGAGCAATCTGGGTATTTTGATTTTGATTTACAACCA</canonical_amplicon>
		<polymorphic_amplicon>AACAGTTGAGGATACTGTGTCATCAGTAAGCAAAGTTGATCAGTTGTGACGTAGGGAATTGGGGAGGCTGAAGCAAGATAATGATATTGTGTAGAAGAATATTTGAAAAGCACCTCGACCCGTCAGATTTATGCCTGCACTCCGGTTCGCCTGCTGGCATTTTTGTACCGCTAGTTGAAACATTGCATACTKTAGCCTGGGAGATGGTGTATTTCGAGCAATCTGGGTATTTTGATTTTGATTTACAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37106</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>796028</contig_pos>
        <strand>+</strand>
        <context>CTCAGAGATT[A/C]AAAAAAAGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAATAGGTTTTGAAATTTCTATTTTTGGTGATTAGGAATCCTCAGAGATT</left_flank>
        <right_flank>AAAAAAAGTCAAAATTCAAATTCCGTTCATGCTGTAATAGAAGCCCACCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAAGAAGGATATGTGCAGTTTGTTGTTTGAGGAATTTCTGAAAAATAAAGTTGAATGGTGGGGACTTGATCTTTAAAAGAAAACCTCAGGGAAAATTTTTGTAAAAGTCTGATCAGCTGATACCCCTTATCGTTTCACAAACTCTCCTAAATTCAAAAAATCTTCCACTTCCGGATTTTTCGTCATTTTTTTTCTTGAGCACATTAGTATTATCTCCCCTCCATGTGTGAAAAATGACTCTTTTCTTCCAACAACACAGGAAATTAGCATTCGGCCCATTTCGCCTCCCAACCTTTTCTTCCTCGGGACGGGGAAAAAGAGTGCATCTATTCTCTCCGCCGTTCCCATTTCTCCTTTTCCCAGCCAAATTAATTTATTTTGGATCAACAAGAGAAAGCGAGATCTTTCTTATTTTGTTTCCCGTTTTTCTTTCATTTTTGACCTTTTGGAATAGGTTTTGAAATTTCTATTTTTGGTGATTAGGAATCCTCAGAGATTAAAAAAAAGTCAAAATTCAAATTCCGTTCATGCTGTAATAGAAGCCCACCCTATACGTGCACTTTGAGCTTAATTATTTCGTTTTCTATAAGAGATATCAAAAACCTGTCAACTAATAAACGATTGATGATGTTATAATAACTAATTTATTAGTTGAAAAGTTTTTAATATCTCTTCAAGGAACCAAGATAATGGAGCTTAAAGTGCACGTATAAGGTGGGCTTTTATTAGAGCAAAATGTCCACTTTGAGACAATGTTTCATTGTTTCTATAAGAGGCCAGTCGATTTTCGCCGCCTGTCAATCTTTTGGCTTGCCTTAAAACGTTCGATATTTCTCAGTTTTTCCACCTATTGTTTTATTATTTTTAGGTCACCCAGATCCAGGTCACCCAGATACAGGTCACCCGGTCATGGTCACCCGGAACCAGGTCACCCTGTTCCAGGTCACCCGGTCAAGTTCACCCGAAACCAGGTCACCCGGTCAGGGTCACCCGGAACCA</canonical>
            <polymorphic>GGAAGAAGGATATGTGCAGTTTGTTGTTTGAGGAATTTCTGAAAAATAAAGTTGAATGGTGGGGACTTGATCTTTAAAAGAAAACCTCAGGGAAAATTTTTGTAAAAGTCTGATCAGCTGATACCCCTTATCGTTTCACAAACTCTCCTAAATTCAAAAAATCTTCCACTTCCGGATTTTTCGTCATTTTTTTTCTTGAGCACATTAGTATTATCTCCCCTCCATGTGTGAAAAATGACTCTTTTCTTCCAACAACACAGGAAATTAGCATTCGGCCCATTTCGCCTCCCAACCTTTTCTTCCTCGGGACGGGGAAAAAGAGTGCATCTATTCTCTCCGCCGTTCCCATTTCTCCTTTTCCCAGCCAAATTAATTTATTTTGGATCAACAAGAGAAAGCGAGATCTTTCTTATTTTGTTTCCCGTTTTTCTTTCATTTTTGACCTTTTGGAATAGGTTTTGAAATTTCTATTTTTGGTGATTAGGAATCCTCAGAGATTMAAAAAAAGTCAAAATTCAAATTCCGTTCATGCTGTAATAGAAGCCCACCCTATACGTGCACTTTGAGCTTAATTATTTCGTTTTCTATAAGAGATATCAAAAACCTGTCAACTAATAAACGATTGATGATGTTATAATAACTAATTTATTAGTTGAAAAGTTTTTAATATCTCTTCAAGGAACCAAGATAATGGAGCTTAAAGTGCACGTATAAGGTGGGCTTTTATTAGAGCAAAATGTCCACTTTGAGACAATGTTTCATTGTTTCTATAAGAGGCCAGTCGATTTTCGCCGCCTGTCAATCTTTTGGCTTGCCTTAAAACGTTCGATATTTCTCAGTTTTTCCACCTATTGTTTTATTATTTTTAGGTCACCCAGATCCAGGTCACCCAGATACAGGTCACCCGGTCATGGTCACCCGGAACCAGGTCACCCTGTTCCAGGTCACCCGGTCAAGTTCACCCGAAACCAGGTCACCCGGTCAGGGTCACCCGGAACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>296 183 128 119 95 74 71 34</canonical_bands>
                <polymorphic_bands>296 199 183 119 95 74 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTTGGAATAGGTTTTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>AACATTGTCTCAAAGTGGACAT</pcr_primer_p2>
		<pcr_amplicon_size>315</pcr_amplicon_size>
		<canonical_amplicon>CTTTTGGAATAGGTTTTGAAATTTCTATTTTTGGTGATTAGGAATCCTCAGAGATTAAAAAAAAGTCAAAATTCAAATTCCGTTCATGCTGTAATAGAAGCCCACCCTATACGTGCACTTTGAGCTTAATTATTTCGTTTTCTATAAGAGATATCAAAAACCTGTCAACTAATAAACGATTGATGATGTTATAATAACTAATTTATTAGTTGAAAAGTTTTTAATATCTCTTCAAGGAACCAAGATAATGGAGCTTAAAGTGCACGTATAAGGTGGGCTTTTATTAGAGCAAAATGTCCACTTTGAGACAATGTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTGGAATAGGTTTTGAAATTTCTATTTTTGGTGATTAGGAATCCTCAGAGATTMAAAAAAAGTCAAAATTCAAATTCCGTTCATGCTGTAATAGAAGCCCACCCTATACGTGCACTTTGAGCTTAATTATTTCGTTTTCTATAAGAGATATCAAAAACCTGTCAACTAATAAACGATTGATGATGTTATAATAACTAATTTATTAGTTGAAAAGTTTTTAATATCTCTTCAAGGAACCAAGATAATGGAGCTTAAAGTGCACGTATAAGGTGGGCTTTTATTAGAGCAAAATGTCCACTTTGAGACAATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37107</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>796109</contig_pos>
        <strand></strand>
        <context>aattatttcg[T/C]tttctataag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCTGTAATAGAAGCCCACCCTATACGTGCACTTTGAGCTTAATTATTTCG</left_flank>
        <right_flank>TTTCTATAAGAGATATCAAAAACCTGTCAACTAATAAACGATTGATGATG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACCTCAGGGAAAATTTTTGTAAAAGTCTGATCAGCTGATACCCCTTATCGTTTCACAAACTCTCCTAAATTCAAAAAATCTTCCACTTCCGGATTTTTCGTCATTTTTTTTCTTGAGCACATTAGTATTATCTCCCCTCCATGTGTGAAAAATGACTCTTTTCTTCCAACAACACAGGAAATTAGCATTCGGCCCATTTCGCCTCCCAACCTTTTCTTCCTCGGGACGGGGAAAAAGAGTGCATCTATTCTCTCCGCCGTTCCCATTTCTCCTTTTCCCAGCCAAATTAATTTATTTTGGATCAACAAGAGAAAGCGAGATCTTTCTTATTTTGTTTCCCGTTTTTCTTTCATTTTTGACCTTTTGGAATAGGTTTTGAAATTTCTATTTTTGGTGATTAGGAATCCTCAGAGATTAAAAAAAAGTCAAAATTCAAATTCCGTTCATGCTGTAATAGAAGCCCACCCTATACGTGCACTTTGAGCTTAATTATTTCGTTTTCTATAAGAGATATCAAAAACCTGTCAACTAATAAACGATTGATGATGTTATAATAACTAATTTATTAGTTGAAAAGTTTTTAATATCTCTTCAAGGAACCAAGATAATGGAGCTTAAAGTGCACGTATAAGGTGGGCTTTTATTAGAGCAAAATGTCCACTTTGAGACAATGTTTCATTGTTTCTATAAGAGGCCAGTCGATTTTCGCCGCCTGTCAATCTTTTGGCTTGCCTTAAAACGTTCGATATTTCTCAGTTTTTCCACCTATTGTTTTATTATTTTTAGGTCACCCAGATCCAGGTCACCCAGATACAGGTCACCCGGTCATGGTCACCCGGAACCAGGTCACCCTGTTCCAGGTCACCCGGTCAAGTTCACCCGAAACCAGGTCACCCGGTCAGGGTCACCCGGAACCAGATCACCCAGTCAGGGTCACCTGGATCCAGGTCACCCTAATCCAGGTCATCCGAATCCAGGTCACCTGGAACCAGGTCACC</canonical>
            <polymorphic>AAACCTCAGGGAAAATTTTTGTAAAAGTCTGATCAGCTGATACCCCTTATCGTTTCACAAACTCTCCTAAATTCAAAAAATCTTCCACTTCCGGATTTTTCGTCATTTTTTTTCTTGAGCACATTAGTATTATCTCCCCTCCATGTGTGAAAAATGACTCTTTTCTTCCAACAACACAGGAAATTAGCATTCGGCCCATTTCGCCTCCCAACCTTTTCTTCCTCGGGACGGGGAAAAAGAGTGCATCTATTCTCTCCGCCGTTCCCATTTCTCCTTTTCCCAGCCAAATTAATTTATTTTGGATCAACAAGAGAAAGCGAGATCTTTCTTATTTTGTTTCCCGTTTTTCTTTCATTTTTGACCTTTTGGAATAGGTTTTGAAATTTCTATTTTTGGTGATTAGGAATCCTCAGAGATTAAAAAAAAGTCAAAATTCAAATTCCGTTCATGCTGTAATAGAAGCCCACCCTATACGTGCACTTTGAGCTTAATTATTTCGYTTTCTATAAGAGATATCAAAAACCTGTCAACTAATAAACGATTGATGATGTTATAATAACTAATTTATTAGTTGAAAAGTTTTTAATATCTCTTCAAGGAACCAAGATAATGGAGCTTAAAGTGCACGTATAAGGTGGGCTTTTATTAGAGCAAAATGTCCACTTTGAGACAATGTTTCATTGTTTCTATAAGAGGCCAGTCGATTTTCGCCGCCTGTCAATCTTTTGGCTTGCCTTAAAACGTTCGATATTTCTCAGTTTTTCCACCTATTGTTTTATTATTTTTAGGTCACCCAGATCCAGGTCACCCAGATACAGGTCACCCGGTCATGGTCACCCGGAACCAGGTCACCCTGTTCCAGGTCACCCGGTCAAGTTCACCCGAAACCAGGTCACCCGGTCAGGGTCACCCGGAACCAGATCACCCAGTCAGGGTCACCTGGATCCAGGTCACCCTAATCCAGGTCATCCGAATCCAGGTCACCTGGAACCAGGTCACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTGGAATAGGTTTTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>AACATTGTCTCAAAGTGGACAT</pcr_primer_p2>
		<pcr_amplicon_size>315</pcr_amplicon_size>
		<canonical_amplicon>CTTTTGGAATAGGTTTTGAAATTTCTATTTTTGGTGATTAGGAATCCTCAGAGATTAAAAAAAAGTCAAAATTCAAATTCCGTTCATGCTGTAATAGAAGCCCACCCTATACGTGCACTTTGAGCTTAATTATTTCGTTTTCTATAAGAGATATCAAAAACCTGTCAACTAATAAACGATTGATGATGTTATAATAACTAATTTATTAGTTGAAAAGTTTTTAATATCTCTTCAAGGAACCAAGATAATGGAGCTTAAAGTGCACGTATAAGGTGGGCTTTTATTAGAGCAAAATGTCCACTTTGAGACAATGTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTGGAATAGGTTTTGAAATTTCTATTTTTGGTGATTAGGAATCCTCAGAGATTAAAAAAAAGTCAAAATTCAAATTCCGTTCATGCTGTAATAGAAGCCCACCCTATACGTGCACTTTGAGCTTAATTATTTCGYTTTCTATAAGAGATATCAAAAACCTGTCAACTAATAAACGATTGATGATGTTATAATAACTAATTTATTAGTTGAAAAGTTTTTAATATCTCTTCAAGGAACCAAGATAATGGAGCTTAAAGTGCACGTATAAGGTGGGCTTTTATTAGAGCAAAATGTCCACTTTGAGACAATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37108</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>796132</contig_pos>
        <strand></strand>
        <context>atatcaaaaa[C/T]ctgtcaacta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGTGCACTTTGAGCTTAATTATTTCGTTTTCTATAAGAGATATCAAAAA</left_flank>
        <right_flank>CTGTCAACTAATAAACGATTGATGATGTTATAATAACTAATTTATTAGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTCTGATCAGCTGATACCCCTTATCGTTTCACAAACTCTCCTAAATTCAAAAAATCTTCCACTTCCGGATTTTTCGTCATTTTTTTTCTTGAGCACATTAGTATTATCTCCCCTCCATGTGTGAAAAATGACTCTTTTCTTCCAACAACACAGGAAATTAGCATTCGGCCCATTTCGCCTCCCAACCTTTTCTTCCTCGGGACGGGGAAAAAGAGTGCATCTATTCTCTCCGCCGTTCCCATTTCTCCTTTTCCCAGCCAAATTAATTTATTTTGGATCAACAAGAGAAAGCGAGATCTTTCTTATTTTGTTTCCCGTTTTTCTTTCATTTTTGACCTTTTGGAATAGGTTTTGAAATTTCTATTTTTGGTGATTAGGAATCCTCAGAGATTAAAAAAAAGTCAAAATTCAAATTCCGTTCATGCTGTAATAGAAGCCCACCCTATACGTGCACTTTGAGCTTAATTATTTCGTTTTCTATAAGAGATATCAAAAACCTGTCAACTAATAAACGATTGATGATGTTATAATAACTAATTTATTAGTTGAAAAGTTTTTAATATCTCTTCAAGGAACCAAGATAATGGAGCTTAAAGTGCACGTATAAGGTGGGCTTTTATTAGAGCAAAATGTCCACTTTGAGACAATGTTTCATTGTTTCTATAAGAGGCCAGTCGATTTTCGCCGCCTGTCAATCTTTTGGCTTGCCTTAAAACGTTCGATATTTCTCAGTTTTTCCACCTATTGTTTTATTATTTTTAGGTCACCCAGATCCAGGTCACCCAGATACAGGTCACCCGGTCATGGTCACCCGGAACCAGGTCACCCTGTTCCAGGTCACCCGGTCAAGTTCACCCGAAACCAGGTCACCCGGTCAGGGTCACCCGGAACCAGATCACCCAGTCAGGGTCACCTGGATCCAGGTCACCCTAATCCAGGTCATCCGAATCCAGGTCACCTGGAACCAGGTCACCCGAATTCAGGTCATCCGAATCCA</canonical>
            <polymorphic>AAAGTCTGATCAGCTGATACCCCTTATCGTTTCACAAACTCTCCTAAATTCAAAAAATCTTCCACTTCCGGATTTTTCGTCATTTTTTTTCTTGAGCACATTAGTATTATCTCCCCTCCATGTGTGAAAAATGACTCTTTTCTTCCAACAACACAGGAAATTAGCATTCGGCCCATTTCGCCTCCCAACCTTTTCTTCCTCGGGACGGGGAAAAAGAGTGCATCTATTCTCTCCGCCGTTCCCATTTCTCCTTTTCCCAGCCAAATTAATTTATTTTGGATCAACAAGAGAAAGCGAGATCTTTCTTATTTTGTTTCCCGTTTTTCTTTCATTTTTGACCTTTTGGAATAGGTTTTGAAATTTCTATTTTTGGTGATTAGGAATCCTCAGAGATTAAAAAAAAGTCAAAATTCAAATTCCGTTCATGCTGTAATAGAAGCCCACCCTATACGTGCACTTTGAGCTTAATTATTTCGTTTTCTATAAGAGATATCAAAAAYCTGTCAACTAATAAACGATTGATGATGTTATAATAACTAATTTATTAGTTGAAAAGTTTTTAATATCTCTTCAAGGAACCAAGATAATGGAGCTTAAAGTGCACGTATAAGGTGGGCTTTTATTAGAGCAAAATGTCCACTTTGAGACAATGTTTCATTGTTTCTATAAGAGGCCAGTCGATTTTCGCCGCCTGTCAATCTTTTGGCTTGCCTTAAAACGTTCGATATTTCTCAGTTTTTCCACCTATTGTTTTATTATTTTTAGGTCACCCAGATCCAGGTCACCCAGATACAGGTCACCCGGTCATGGTCACCCGGAACCAGGTCACCCTGTTCCAGGTCACCCGGTCAAGTTCACCCGAAACCAGGTCACCCGGTCAGGGTCACCCGGAACCAGATCACCCAGTCAGGGTCACCTGGATCCAGGTCACCCTAATCCAGGTCATCCGAATCCAGGTCACCTGGAACCAGGTCACCCGAATTCAGGTCATCCGAATCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTGGAATAGGTTTTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>AACATTGTCTCAAAGTGGACAT</pcr_primer_p2>
		<pcr_amplicon_size>315</pcr_amplicon_size>
		<canonical_amplicon>CTTTTGGAATAGGTTTTGAAATTTCTATTTTTGGTGATTAGGAATCCTCAGAGATTAAAAAAAAGTCAAAATTCAAATTCCGTTCATGCTGTAATAGAAGCCCACCCTATACGTGCACTTTGAGCTTAATTATTTCGTTTTCTATAAGAGATATCAAAAACCTGTCAACTAATAAACGATTGATGATGTTATAATAACTAATTTATTAGTTGAAAAGTTTTTAATATCTCTTCAAGGAACCAAGATAATGGAGCTTAAAGTGCACGTATAAGGTGGGCTTTTATTAGAGCAAAATGTCCACTTTGAGACAATGTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTGGAATAGGTTTTGAAATTTCTATTTTTGGTGATTAGGAATCCTCAGAGATTAAAAAAAAGTCAAAATTCAAATTCCGTTCATGCTGTAATAGAAGCCCACCCTATACGTGCACTTTGAGCTTAATTATTTCGTTTTCTATAAGAGATATCAAAAAYCTGTCAACTAATAAACGATTGATGATGTTATAATAACTAATTTATTAGTTGAAAAGTTTTTAATATCTCTTCAAGGAACCAAGATAATGGAGCTTAAAGTGCACGTATAAGGTGGGCTTTTATTAGAGCAAAATGTCCACTTTGAGACAATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37109</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>798772</contig_pos>
        <strand>+</strand>
        <context>GATTCTTTGA[A/C]CWATTTATTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATGGATCAATGTGGATTCGAATCAGTGGAAGGGTTCGAAGATTCTTTGA</left_flank>
        <right_flank>CTATTTATTGGAAATGTGGGATTGCTAATCTTTATTAATCATTCGGTAGT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACACCAACGCAGGACGGATGTGGAATTTATGAGAAAATACTATCGTTAGACTGTCAGGATTCTATGGAAGATTTTAGAGAGTCTGTAGTAAGGTTAAAACTTGGAAATCAGACAAAAGATGATTATTTGGAAGTTGCAAAACTTTGTGATGAAATGCAGGTGAGTGAACTTTTAAAATCTACTGTAAACTTCTTATTTCCAGAATTGCATAAATAATTTGACTACAAGCTGTGCAATCTCTTTAGAATTTAAAAGAAAAACTAAGGAATATTGTGAAAAAATGCATTTCTTGGCATCCCCATTCTGGCAATGCATCCAAAGATTGAAAACCGAAAATGTGAAACCGGATCTAATGAAATATGTATGCCTCATCGGACACGAACTTTCTGATGACTCTACTGCCTGTCAACGATTCAGTGGCTCGTCAGAATGTATTGAAGGTTTTATGATGGATCAATGTGGATTCGAATCAGTGGAAGGGTTCGAAGATTCTTTGACCTATTTATTGGAAATGTGGGATTGCTAATCTTTATTAATCATTCGGTAGTTTTATTGAACTGTGTAAAATAAATATTGGATTCCATTGTGGCATCATTATAAATCATTTGTTCTCCAAATGTCGATTTTGGCTCCTCCTCCACATGAGCTCTCCCAATGCACAAGAATATCAATCTCCTTGTTTCTTTCTGCCATTCAGGTAATGCAGAGTACAGAATAATTGGTACAGTAATCCCATAGGCAAGACAGAAAAAGTTGAAACAAATATATGACCAATAGATGATCATCATATCGATTTTGAAATGATCCATGAGAAGGATAGAACAGCATCCGATGTTGAAAAAGAATATCGAGATTTGAACTTTTTTGAGAACCTACAAATATTTTTTCATTCATTTTTTTTTCTTTTTTTTTTTGAATTTTTCGAAACGACTTACATTACACATTTTGATATTTTCGGCTAATTGAAATCTCTCGCTCAATCCATAGGAAACTTTTGA</canonical>
            <polymorphic>TGACACCAACGCAGGACGGATGTGGAATTTATGAGAAAATACTATCGTTAGACTGTCAGGATTCTATGGAAGATTTTAGAGAGTCTGTAGTAAGGTTAAAACTTGGAAATCAGACAAAAGATGATTATTTGGAAGTTGCAAAACTTTGTGATGAAATGCAGGTGAGTGAACTTTTAAAATCTACTGTAAACTTCTTATTTCCAGAATTGCATAAATAATTTGACTACAAGCTGTGCAATCTCTTTAGAATTTAAAAGAAAAACTAAGGAATATTGTGAAAAAATGCATTTCTTGGCATCCCCATTCTGGCAATGCATCCAAAGATTGAAAACCGAAAATGTGAAACCGGATCTAATGAAATATGTATGCCTCATCGGACACGAACTTTCTGATGACTCTACTGCCTGTCAACGATTCAGTGGCTCGTCAGAATGTATTGAAGGTTTTATGATGGATCAATGTGGATTCGAATCAGTGGAAGGGTTCGAAGATTCTTTGAMCTATTTATTGGAAATGTGGGATTGCTAATCTTTATTAATCATTCGGTAGTTTTATTGAACTGTGTAAAATAAATATTGGATTCCATTGTGGCATCATTATAAATCATTTGTTCTCCAAATGTCGATTTTGGCTCCTCCTCCACATGAGCTCTCCCAATGCACAAGAATATCAATCTCCTTGTTTCTTTCTGCCATTCAGGTAATGCAGAGTACAGAATAATTGGTACAGTAATCCCATAGGCAAGACAGAAAAAGTTGAAACAAATATATGACCAATAGATGATCATCATATCGATTTTGAAATGATCCATGAGAAGGATAGAACAGCATCCGATGTTGAAAAAGAATATCGAGATTTGAACTTTTTTGAGAACCTACAAATATTTTTTCATTCATTTTTTTTTCTTTTTTTTTTTGAATTTTTCGAAACGACTTACATTACACATTTTGATATTTTCGGCTAATTGAAATCTCTCGCTCAATCCATAGGAAACTTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGTTTTATGATGGATCAATGT</pcr_primer_p1>
		<pcr_primer_p2>GAAAGAAACAAGGAGATTGATATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGGTTTTATGATGGATCAATGTGGATTCGAATCAGTGGAAGGGTTCGAAGATTCTTTGACCTATTTATTGGAAATGTGGGATTGCTAATCTTTATTAATCATTCGGTAGTTTTATTGAACTGTGTAAAATAAATATTGGATTCCATTGTGGCATCATTATAAATCATTTGTTCTCCAAATGTCGATTTTGGCTCCTCCTCCACATGAGCTCTCCCAATGCACAAGAATATCAATCTCCTTGTTTCTTTC</canonical_amplicon>
		<polymorphic_amplicon>AGGTTTTATGATGGATCAATGTGGATTCGAATCAGTGGAAGGGTTCGAAGATTCTTTGAMCTATTTATTGGAAATGTGGGATTGCTAATCTTTATTAATCATTCGGTAGTTTTATTGAACTGTGTAAAATAAATATTGGATTCCATTGTGGCATCATTATAAATCATTTGTTCTCCAAATGTCGATTTTGGCTCCTCCTCCACATGAGCTCTCCCAATGCACAAGAATATCAATCTCCTTGTTTCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37110</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>836172</contig_pos>
        <strand></strand>
        <context>CAGAAAGCTT[T/A]AAAAAATCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CTCGAACGAAAATCAGGAGGTAGAAAGTGTAGAGGAATTCCAGAAAGCTT</left_flank>
        <right_flank>AAAAAATCATTAGAAAAGTCTGCAAAAATTAAAACCAACCTTAAAAGTAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGGAACCCTGAATTTTTGAACTTCTATTTTTCTGAAACTTAGAATTTAAATTTTAAAAACATTCTGGCATTTGAGATCTTTCAAACTTCCGGATTTCTAAATTTTGTTTGCTTTTGGATTTCTGAAATCGGAATTTCAGAATTTCGAAACATCCAAGTTTCTAAATTACTAAATTCCTAATTTTTTTCAATTTCTTAATTTTCAAATTCGGAATTTCAGAGTGTCCGAATCTCAGTATTTCGAAATTTTTCGAAACTCCCGGTTTTCTAAACTTTTTGAACTTCTAAATTTCCGAATTTTTGAATTTTTGAAACTAAAAAATTGAGAGTTGGAGAGACTCACTGTTTGGATTCAACTGCATATAAATTATGATTAGTCTAGAAACCATTGATCCAAAATATTGACCTCCGTAGTTTATAAAAAGAAAAGTCAGGTTGAAATGCATGGCTCGAACGAAAATCAGGAGGTAGAAAGTGTAGAGGAATTCCAGAAAGCTTTAAAAAATCATTAGAAAAGTCTGCAAAAATTAAAACCAACCTTAAAAGTAATCCTACAACTTCCAATTTTAACAGAACATTGAAAACGTTCTCCAGATTTCCAGCCTCGATATAGCTTGTGTTTATAAATGTAATAAAACGAACATTCGATGTGCTCGGCGAGCACATTTTTGTGTCTGAAAGCCACGAAAGGAGTATAACGATAGTGGAGAGCATTCGTAAACGACAAAAAAAAATTTTGTATCAGTATTTTTATAGAGGGGAAGGATTTTTTGGGGGGGGGGGGGGGGGAGTTAATGAAGGAAAACAAGACAAGGAAGATGTGTTAAGAATATTCTCGAGAGAAATCAACAAAAACTTTAATGATGATATTTTTTATTCAATGAAATCTTTACAGGTCCAGTCAAGCGGAATTCGGGGGTGGCTGAATTATGAATTTCGAGATTCAAAACAAAAAAAAAGACAAAATAGAAGAACAAAAAAGATGCATCATTTCAATTT</canonical>
            <polymorphic>TTCGGAACCCTGAATTTTTGAACTTCTATTTTTCTGAAACTTAGAATTTAAATTTTAAAAACATTCTGGCATTTGAGATCTTTCAAACTTCCGGATTTCTAAATTTTGTTTGCTTTTGGATTTCTGAAATCGGAATTTCAGAATTTCGAAACATCCAAGTTTCTAAATTACTAAATTCCTAATTTTTTTCAATTTCTTAATTTTCAAATTCGGAATTTCAGAGTGTCCGAATCTCAGTATTTCGAAATTTTTCGAAACTCCCGGTTTTCTAAACTTTTTGAACTTCTAAATTTCCGAATTTTTGAATTTTTGAAACTAAAAAATTGAGAGTTGGAGAGACTCACTGTTTGGATTCAACTGCATATAAATTATGATTAGTCTAGAAACCATTGATCCAAAATATTGACCTCCGTAGTTTATAAAAAGAAAAGTCAGGTTGAAATGCATGGCTCGAACGAAAATCAGGAGGTAGAAAGTGTAGAGGAATTCCAGAAAGCTTWAAAAAATCATTAGAAAAGTCTGCAAAAATTAAAACCAACCTTAAAAGTAATCCTACAACTTCCAATTTTAACAGAACATTGAAAACGTTCTCCAGATTTCCAGCCTCGATATAGCTTGTGTTTATAAATGTAATAAAACGAACATTCGATGTGCTCGGCGAGCACATTTTTGTGTCTGAAAGCCACGAAAGGAGTATAACGATAGTGGAGAGCATTCGTAAACGACAAAAAAAAATTTTGTATCAGTATTTTTATAGAGGGGAAGGATTTTTTGGGGGGGGGGGGGGGGGAGTTAATGAAGGAAAACAAGACAAGGAAGATGTGTTAAGAATATTCTCGAGAGAAATCAACAAAAACTTTAATGATGATATTTTTTATTCAATGAAATCTTTACAGGTCCAGTCAAGCGGAATTCGGGGGTGGCTGAATTATGAATTTCGAGATTCAAAACAAAAAAAAAGACAAAATAGAAGAACAAAAAAGATGCATCATTTCAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 444 49 7</canonical_bands>
                <polymorphic_bands>944 49 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>302 225 142 141 48 34 32 30 27 12 7</canonical_bands>
                <polymorphic_bands>332 225 142 141 48 34 32 27 12 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTCACTGTTTGGATTCAACT</pcr_primer_p1>
		<pcr_primer_p2>AACGTTTTCAATGTTCTGTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GACTCACTGTTTGGATTCAACTGCATATAAATTATGATTAGTCTAGAAACCATTGATCCAAAATATTGACCTCCGTAGTTTATAAAAAGAAAAGTCAGGTTGAAATGCATGGCTCGAACGAAAATCAGGAGGTAGAAAGTGTAGAGGAATTCCAGAAAGCTTTAAAAAATCATTAGAAAAGTCTGCAAAAATTAAAACCAACCTTAAAAGTAATCCTACAACTTCCAATTTTAACAGAACATTGAAAACGTT</canonical_amplicon>
		<polymorphic_amplicon>GACTCACTGTTTGGATTCAACTGCATATAAATTATGATTAGTCTAGAAACCATTGATCCAAAATATTGACCTCCGTAGTTTATAAAAAGAAAAGTCAGGTTGAAATGCATGGCTCGAACGAAAATCAGGAGGTAGAAAGTGTAGAGGAATTCCAGAAAGCTTWAAAAAATCATTAGAAAAGTCTGCAAAAATTAAAACCAACCTTAAAAGTAATCCTACAACTTCCAATTTTAACAGAACATTGAAAACGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37111</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>836238</contig_pos>
        <strand></strand>
        <context>CAACTTCCAA[T/A]TTTAACAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAGTCTGCAAAAATTAAAACCAACCTTAAAAGTAATCCTACAACTTCCAA</left_flank>
        <right_flank>TTTAACAGAACATTGAAAACGTTCTCCAGATTTCCAGCCTCGATATAGCT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGCATTTGAGATCTTTCAAACTTCCGGATTTCTAAATTTTGTTTGCTTTTGGATTTCTGAAATCGGAATTTCAGAATTTCGAAACATCCAAGTTTCTAAATTACTAAATTCCTAATTTTTTTCAATTTCTTAATTTTCAAATTCGGAATTTCAGAGTGTCCGAATCTCAGTATTTCGAAATTTTTCGAAACTCCCGGTTTTCTAAACTTTTTGAACTTCTAAATTTCCGAATTTTTGAATTTTTGAAACTAAAAAATTGAGAGTTGGAGAGACTCACTGTTTGGATTCAACTGCATATAAATTATGATTAGTCTAGAAACCATTGATCCAAAATATTGACCTCCGTAGTTTATAAAAAGAAAAGTCAGGTTGAAATGCATGGCTCGAACGAAAATCAGGAGGTAGAAAGTGTAGAGGAATTCCAGAAAGCTTTAAAAAATCATTAGAAAAGTCTGCAAAAATTAAAACCAACCTTAAAAGTAATCCTACAACTTCCAATTTTAACAGAACATTGAAAACGTTCTCCAGATTTCCAGCCTCGATATAGCTTGTGTTTATAAATGTAATAAAACGAACATTCGATGTGCTCGGCGAGCACATTTTTGTGTCTGAAAGCCACGAAAGGAGTATAACGATAGTGGAGAGCATTCGTAAACGACAAAAAAAAATTTTGTATCAGTATTTTTATAGAGGGGAAGGATTTTTTGGGGGGGGGGGGGGGGGAGTTAATGAAGGAAAACAAGACAAGGAAGATGTGTTAAGAATATTCTCGAGAGAAATCAACAAAAACTTTAATGATGATATTTTTTATTCAATGAAATCTTTACAGGTCCAGTCAAGCGGAATTCGGGGGTGGCTGAATTATGAATTTCGAGATTCAAAACAAAAAAAAAGACAAAATAGAAGAACAAAAAAGATGCATCATTTCAATTTTCCCTGAATATTGTAAATTTGTAGAAAATGTGCTAGATGGAATAGTTGGAAATTTTCAAGATTAAA</canonical>
            <polymorphic>TGGCATTTGAGATCTTTCAAACTTCCGGATTTCTAAATTTTGTTTGCTTTTGGATTTCTGAAATCGGAATTTCAGAATTTCGAAACATCCAAGTTTCTAAATTACTAAATTCCTAATTTTTTTCAATTTCTTAATTTTCAAATTCGGAATTTCAGAGTGTCCGAATCTCAGTATTTCGAAATTTTTCGAAACTCCCGGTTTTCTAAACTTTTTGAACTTCTAAATTTCCGAATTTTTGAATTTTTGAAACTAAAAAATTGAGAGTTGGAGAGACTCACTGTTTGGATTCAACTGCATATAAATTATGATTAGTCTAGAAACCATTGATCCAAAATATTGACCTCCGTAGTTTATAAAAAGAAAAGTCAGGTTGAAATGCATGGCTCGAACGAAAATCAGGAGGTAGAAAGTGTAGAGGAATTCCAGAAAGCTTTAAAAAATCATTAGAAAAGTCTGCAAAAATTAAAACCAACCTTAAAAGTAATCCTACAACTTCCAAWTTTAACAGAACATTGAAAACGTTCTCCAGATTTCCAGCCTCGATATAGCTTGTGTTTATAAATGTAATAAAACGAACATTCGATGTGCTCGGCGAGCACATTTTTGTGTCTGAAAGCCACGAAAGGAGTATAACGATAGTGGAGAGCATTCGTAAACGACAAAAAAAAATTTTGTATCAGTATTTTTATAGAGGGGAAGGATTTTTTGGGGGGGGGGGGGGGGGAGTTAATGAAGGAAAACAAGACAAGGAAGATGTGTTAAGAATATTCTCGAGAGAAATCAACAAAAACTTTAATGATGATATTTTTTATTCAATGAAATCTTTACAGGTCCAGTCAAGCGGAATTCGGGGGTGGCTGAATTATGAATTTCGAGATTCAAAACAAAAAAAAAGACAAAATAGAAGAACAAAAAAGATGCATCATTTCAATTTTCCCTGAATATTGTAAATTTGTAGAAAATGTGCTAGATGGAATAGTTGGAAATTTTCAAGATTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>177 170 118 62 45 43 42 37 35 35 32 32 24 20 17 16 16 10 8 8 8 8 8 8 7 7 7</canonical_bands>
                <polymorphic_bands>207 177 118 62 45 43 42 35 35 32 32 24 20 17 16 16 10 8 8 8 8 8 8 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTGTAGAGGAATTCCAGAAAG</pcr_primer_p1>
		<pcr_primer_p2>TGCTCTCCACTATCGTTATACTC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>AAGTGTAGAGGAATTCCAGAAAGCTTTAAAAAATCATTAGAAAAGTCTGCAAAAATTAAAACCAACCTTAAAAGTAATCCTACAACTTCCAATTTTAACAGAACATTGAAAACGTTCTCCAGATTTCCAGCCTCGATATAGCTTGTGTTTATAAATGTAATAAAACGAACATTCGATGTGCTCGGCGAGCACATTTTTGTGTCTGAAAGCCACGAAAGGAGTATAACGATAGTGGAGAGCA</canonical_amplicon>
		<polymorphic_amplicon>AAGTGTAGAGGAATTCCAGAAAGCTTTAAAAAATCATTAGAAAAGTCTGCAAAAATTAAAACCAACCTTAAAAGTAATCCTACAACTTCCAAWTTTAACAGAACATTGAAAACGTTCTCCAGATTTCCAGCCTCGATATAGCTTGTGTTTATAAATGTAATAAAACGAACATTCGATGTGCTCGGCGAGCACATTTTTGTGTCTGAAAGCCACGAAAGGAGTATAACGATAGTGGAGAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37112</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>836286</contig_pos>
        <strand></strand>
        <context>CCTCGATATA[G/A]CTTGTGTTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATTTTAACAGAACATTGAAAACGTTCTCCAGATTTCCAGCCTCGATATA</left_flank>
        <right_flank>CTTGTGTTTATAAATGTAATAAAACGAACATTCGATGTGCTCGGCGAGCA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGGATTTCTGAAATCGGAATTTCAGAATTTCGAAACATCCAAGTTTCTAAATTACTAAATTCCTAATTTTTTTCAATTTCTTAATTTTCAAATTCGGAATTTCAGAGTGTCCGAATCTCAGTATTTCGAAATTTTTCGAAACTCCCGGTTTTCTAAACTTTTTGAACTTCTAAATTTCCGAATTTTTGAATTTTTGAAACTAAAAAATTGAGAGTTGGAGAGACTCACTGTTTGGATTCAACTGCATATAAATTATGATTAGTCTAGAAACCATTGATCCAAAATATTGACCTCCGTAGTTTATAAAAAGAAAAGTCAGGTTGAAATGCATGGCTCGAACGAAAATCAGGAGGTAGAAAGTGTAGAGGAATTCCAGAAAGCTTTAAAAAATCATTAGAAAAGTCTGCAAAAATTAAAACCAACCTTAAAAGTAATCCTACAACTTCCAATTTTAACAGAACATTGAAAACGTTCTCCAGATTTCCAGCCTCGATATAGCTTGTGTTTATAAATGTAATAAAACGAACATTCGATGTGCTCGGCGAGCACATTTTTGTGTCTGAAAGCCACGAAAGGAGTATAACGATAGTGGAGAGCATTCGTAAACGACAAAAAAAAATTTTGTATCAGTATTTTTATAGAGGGGAAGGATTTTTTGGGGGGGGGGGGGGGGGAGTTAATGAAGGAAAACAAGACAAGGAAGATGTGTTAAGAATATTCTCGAGAGAAATCAACAAAAACTTTAATGATGATATTTTTTATTCAATGAAATCTTTACAGGTCCAGTCAAGCGGAATTCGGGGGTGGCTGAATTATGAATTTCGAGATTCAAAACAAAAAAAAAGACAAAATAGAAGAACAAAAAAGATGCATCATTTCAATTTTCCCTGAATATTGTAAATTTGTAGAAAATGTGCTAGATGGAATAGTTGGAAATTTTCAAGATTAAAAAAAGCCAAATGGTGATGATGTCTGAAAAAATCTGATTAGAAAAAAAA</canonical>
            <polymorphic>TTTGGATTTCTGAAATCGGAATTTCAGAATTTCGAAACATCCAAGTTTCTAAATTACTAAATTCCTAATTTTTTTCAATTTCTTAATTTTCAAATTCGGAATTTCAGAGTGTCCGAATCTCAGTATTTCGAAATTTTTCGAAACTCCCGGTTTTCTAAACTTTTTGAACTTCTAAATTTCCGAATTTTTGAATTTTTGAAACTAAAAAATTGAGAGTTGGAGAGACTCACTGTTTGGATTCAACTGCATATAAATTATGATTAGTCTAGAAACCATTGATCCAAAATATTGACCTCCGTAGTTTATAAAAAGAAAAGTCAGGTTGAAATGCATGGCTCGAACGAAAATCAGGAGGTAGAAAGTGTAGAGGAATTCCAGAAAGCTTTAAAAAATCATTAGAAAAGTCTGCAAAAATTAAAACCAACCTTAAAAGTAATCCTACAACTTCCAATTTTAACAGAACATTGAAAACGTTCTCCAGATTTCCAGCCTCGATATARCTTGTGTTTATAAATGTAATAAAACGAACATTCGATGTGCTCGGCGAGCACATTTTTGTGTCTGAAAGCCACGAAAGGAGTATAACGATAGTGGAGAGCATTCGTAAACGACAAAAAAAAATTTTGTATCAGTATTTTTATAGAGGGGAAGGATTTTTTGGGGGGGGGGGGGGGGGAGTTAATGAAGGAAAACAAGACAAGGAAGATGTGTTAAGAATATTCTCGAGAGAAATCAACAAAAACTTTAATGATGATATTTTTTATTCAATGAAATCTTTACAGGTCCAGTCAAGCGGAATTCGGGGGTGGCTGAATTATGAATTTCGAGATTCAAAACAAAAAAAAAGACAAAATAGAAGAACAAAAAAGATGCATCATTTCAATTTTCCCTGAATATTGTAAATTTGTAGAAAATGTGCTAGATGGAATAGTTGGAAATTTTCAAGATTAAAAAAAGCCAAATGGTGATGATGTCTGAAAAAATCTGATTAGAAAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>500 382 118</canonical_bands>
                <polymorphic_bands>618 382</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>335 241 148 107 68 47 43 11</canonical_bands>
                <polymorphic_bands>335 241 148 107 79 47 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAATTAAAACCAACCTTAAA</pcr_primer_p1>
		<pcr_primer_p2>AAATCCTTCCCCTCTATAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATTAAAACCAACCTTAAAAGTAATCCTACAACTTCCAATTTTAACAGAACATTGAAAACGTTCTCCAGATTTCCAGCCTCGATATAGCTTGTGTTTATAAATGTAATAAAACGAACATTCGATGTGCTCGGCGAGCACATTTTTGTGTCTGAAAGCCACGAAAGGAGTATAACGATAGTGGAGAGCATTCGTAAACGACAAAAAAAAATTTTGTATCAGTATTTTTATAGAGGGGAAGGATTT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAATTAAAACCAACCTTAAAAGTAATCCTACAACTTCCAATTTTAACAGAACATTGAAAACGTTCTCCAGATTTCCAGCCTCGATATARCTTGTGTTTATAAATGTAATAAAACGAACATTCGATGTGCTCGGCGAGCACATTTTTGTGTCTGAAAGCCACGAAAGGAGTATAACGATAGTGGAGAGCATTCGTAAACGACAAAAAAAAATTTTGTATCAGTATTTTTATAGAGGGGAAGGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37113</snp_id>
        <super_contig>c011800736.Contig7</super_contig>
        <contig_pos>836446</contig_pos>
        <strand></strand>
        <context>AGGATTTTTT[G/T]GGGGGGGGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GACAAAAAAAAATTTTGTATCAGTATTTTTATAGAGGGGAAGGATTTTTT</left_flank>
        <right_flank>GGGGGGGGGGGGGGGGAGTTAATGAAGGAAAACAAGACAAGGAAGATGTG</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGAACTTCTAAATTTCCGAATTTTTGAATTTTTGAAACTAAAAAATTGAGAGTTGGAGAGACTCACTGTTTGGATTCAACTGCATATAAATTATGATTAGTCTAGAAACCATTGATCCAAAATATTGACCTCCGTAGTTTATAAAAAGAAAAGTCAGGTTGAAATGCATGGCTCGAACGAAAATCAGGAGGTAGAAAGTGTAGAGGAATTCCAGAAAGCTTTAAAAAATCATTAGAAAAGTCTGCAAAAATTAAAACCAACCTTAAAAGTAATCCTACAACTTCCAATTTTAACAGAACATTGAAAACGTTCTCCAGATTTCCAGCCTCGATATAGCTTGTGTTTATAAATGTAATAAAACGAACATTCGATGTGCTCGGCGAGCACATTTTTGTGTCTGAAAGCCACGAAAGGAGTATAACGATAGTGGAGAGCATTCGTAAACGACAAAAAAAAATTTTGTATCAGTATTTTTATAGAGGGGAAGGATTTTTTGGGGGGGGGGGGGGGGGAGTTAATGAAGGAAAACAAGACAAGGAAGATGTGTTAAGAATATTCTCGAGAGAAATCAACAAAAACTTTAATGATGATATTTTTTATTCAATGAAATCTTTACAGGTCCAGTCAAGCGGAATTCGGGGGTGGCTGAATTATGAATTTCGAGATTCAAAACAAAAAAAAAGACAAAATAGAAGAACAAAAAAGATGCATCATTTCAATTTTCCCTGAATATTGTAAATTTGTAGAAAATGTGCTAGATGGAATAGTTGGAAATTTTCAAGATTAAAAAAAGCCAAATGGTGATGATGTCTGAAAAAATCTGATTAGAAAAAAAAACAGCAGTTTGACTTGACTTCAGAAACAAAATTTTATTTCTGGATATCAGAGTCTAGAGATTTCAGAATTTCCGAGTTTCAGAATTCCAGAATTTCAAAAGTTGCAATTTCAGACAATTTCAGACCAGAATTTCGTAATTTTAGATTTTGGGGATTTCAG</canonical>
            <polymorphic>TTTTTGAACTTCTAAATTTCCGAATTTTTGAATTTTTGAAACTAAAAAATTGAGAGTTGGAGAGACTCACTGTTTGGATTCAACTGCATATAAATTATGATTAGTCTAGAAACCATTGATCCAAAATATTGACCTCCGTAGTTTATAAAAAGAAAAGTCAGGTTGAAATGCATGGCTCGAACGAAAATCAGGAGGTAGAAAGTGTAGAGGAATTCCAGAAAGCTTTAAAAAATCATTAGAAAAGTCTGCAAAAATTAAAACCAACCTTAAAAGTAATCCTACAACTTCCAATTTTAACAGAACATTGAAAACGTTCTCCAGATTTCCAGCCTCGATATAGCTTGTGTTTATAAATGTAATAAAACGAACATTCGATGTGCTCGGCGAGCACATTTTTGTGTCTGAAAGCCACGAAAGGAGTATAACGATAGTGGAGAGCATTCGTAAACGACAAAAAAAAATTTTGTATCAGTATTTTTATAGAGGGGAAGGATTTTTTKGGGGGGGGGGGGGGGGAGTTAATGAAGGAAAACAAGACAAGGAAGATGTGTTAAGAATATTCTCGAGAGAAATCAACAAAAACTTTAATGATGATATTTTTTATTCAATGAAATCTTTACAGGTCCAGTCAAGCGGAATTCGGGGGTGGCTGAATTATGAATTTCGAGATTCAAAACAAAAAAAAAGACAAAATAGAAGAACAAAAAAGATGCATCATTTCAATTTTCCCTGAATATTGTAAATTTGTAGAAAATGTGCTAGATGGAATAGTTGGAAATTTTCAAGATTAAAAAAAGCCAAATGGTGATGATGTCTGAAAAAATCTGATTAGAAAAAAAAACAGCAGTTTGACTTGACTTCAGAAACAAAATTTTATTTCTGGATATCAGAGTCTAGAGATTTCAGAATTTCCGAGTTTCAGAATTCCAGAATTTCAAAAGTTGCAATTTCAGACAATTTCAGACCAGAATTTCGTAATTTTAGATTTTGGGGATTTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAAAACGTTCTCCAGATT</pcr_primer_p1>
		<pcr_primer_p2>TTAACACATCTTCCTTGTCTTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGAAAACGTTCTCCAGATTTCCAGCCTCGATATAGCTTGTGTTTATAAATGTAATAAAACGAACATTCGATGTGCTCGGCGAGCACATTTTTGTGTCTGAAAGCCACGAAAGGAGTATAACGATAGTGGAGAGCATTCGTAAACGACAAAAAAAAATTTTGTATCAGTATTTTTATAGAGGGGAAGGATTTTTTGGGGGGGGGGGGGGGGGAGTTAATGAAGGAAAACAAGACAAGGAAGATGTGTTAA</canonical_amplicon>
		<polymorphic_amplicon>TTGAAAACGTTCTCCAGATTTCCAGCCTCGATATAGCTTGTGTTTATAAATGTAATAAAACGAACATTCGATGTGCTCGGCGAGCACATTTTTGTGTCTGAAAGCCACGAAAGGAGTATAACGATAGTGGAGAGCATTCGTAAACGACAAAAAAAAATTTTGTATCAGTATTTTTATAGAGGGGAAGGATTTTTTKGGGGGGGGGGGGGGGGAGTTAATGAAGGAAAACAAGACAAGGAAGATGTGTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37114</snp_id>
        <super_contig>c011800915.Contig1</super_contig>
        <contig_pos>20099</contig_pos>
        <strand>+</strand>
        <context>ATATGCATTT[A/T]CATTGTAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGGATTTTTGTTTAAAAAATCGATTTTCTAGGCGTTTTATATGCATTT</left_flank>
        <right_flank>CATTGTAATTTTTATAATTATTATTCACACAATAAATGTTGACAATCGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCACTTAGATTTCTCAAATTTTTCAGCCACAACCCCTGGATGATCTCGATCAAATCGAAGGACTCTTTTTCGAGGAACACGAGACGCTGCTGAAAATTCCAGACGCTGAAATTGAGCAAATAGACGCGAACGACGATATCGACACCAATTTTTTGTCGATTATTATGGACGATCGAGTTCCGATCAATGAATTGGATCGATATTTGAATAGTTGAAATTGTTGACAAAAACAATTTTTTTTTGAAAATTTTTTATCCCTAAAAATTCAAATTTCCCGCTCTGGCATTGTTTTTTTTTCCGTTTTTTCTTGCCTCCTCGATTGTTTCAATATTTTCAAAAAAAAATTTTTGGAATTTTTTTTGAATTTTCCCAAAAAAATTTCCATTTTTCTCTAGCACTCTCTCGTTTTACCGCACTCTCTATAGCTTTTTTTTGTTCCCATATTTTTTGGATTTTTGTTTAAAAAATCGATTTTCTAGGCGTTTTATATGCATTTACATTGTAATTTTTATAATTATTATTCACACAATAAATGTTGACAATCGCGCTCCGTTGACAACGAAAAATTCTGAAATTCTGAAACTTTCAAAAATTGAGAAAAACAGTAAATAAATAGATTTTTATTTTCTAAAAAATTGAAAAATCGGAAAAACACAAAAAGATGACACCTGGAAGGAAAGAAGAAGAGAAAACAGTATGTGGTGGACTAGAATTTTTTGGGGAATTTGGAAATCTAGGCCATGGATTTTTTAAATAAAATAATTTTTGAAATAAGGGGGAAGTGTACACGTATTGGGAGTGGGTGGGAAATTGGGCTGAAATTCTGAAGATTGACATTTTCAGAAAGAAAATGTTTTCTCAAAAAAGCATCAAGTAGCCTAAAACTAGGCAAAAAATCGATAATTTCAAATTTCGGGAATTCGAAGAATCAGTTAGCTCAGCCGATTGGATTTTTCTCATTTTCTTCTTTTGATTCAGTTTTTCCTGAAATTCCAAA</canonical>
            <polymorphic>AAATCACTTAGATTTCTCAAATTTTTCAGCCACAACCCCTGGATGATCTCGATCAAATCGAAGGACTCTTTTTCGAGGAACACGAGACGCTGCTGAAAATTCCAGACGCTGAAATTGAGCAAATAGACGCGAACGACGATATCGACACCAATTTTTTGTCGATTATTATGGACGATCGAGTTCCGATCAATGAATTGGATCGATATTTGAATAGTTGAAATTGTTGACAAAAACAATTTTTTTTTGAAAATTTTTTATCCCTAAAAATTCAAATTTCCCGCTCTGGCATTGTTTTTTTTTCCGTTTTTTCTTGCCTCCTCGATTGTTTCAATATTTTCAAAAAAAAATTTTTGGAATTTTTTTTGAATTTTCCCAAAAAAATTTCCATTTTTCTCTAGCACTCTCTCGTTTTACCGCACTCTCTATAGCTTTTTTTTGTTCCCATATTTTTTGGATTTTTGTTTAAAAAATCGATTTTCTAGGCGTTTTATATGCATTTWCATTGTAATTTTTATAATTATTATTCACACAATAAATGTTGACAATCGCGCTCCGTTGACAACGAAAAATTCTGAAATTCTGAAACTTTCAAAAATTGAGAAAAACAGTAAATAAATAGATTTTTATTTTCTAAAAAATTGAAAAATCGGAAAAACACAAAAAGATGACACCTGGAAGGAAAGAAGAAGAGAAAACAGTATGTGGTGGACTAGAATTTTTTGGGGAATTTGGAAATCTAGGCCATGGATTTTTTAAATAAAATAATTTTTGAAATAAGGGGGAAGTGTACACGTATTGGGAGTGGGTGGGAAATTGGGCTGAAATTCTGAAGATTGACATTTTCAGAAAGAAAATGTTTTCTCAAAAAAGCATCAAGTAGCCTAAAACTAGGCAAAAAATCGATAATTTCAAATTTCGGGAATTCGAAGAATCAGTTAGCTCAGCCGATTGGATTTTTCTCATTTTCTTCTTTTGATTCAGTTTTTCCTGAAATTCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACCGCACTCTCTATAGCTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTGTTTTTCCGATTTTTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TACCGCACTCTCTATAGCTTTTTTTTGTTCCCATATTTTTTGGATTTTTGTTTAAAAAATCGATTTTCTAGGCGTTTTATATGCATTTACATTGTAATTTTTATAATTATTATTCACACAATAAATGTTGACAATCGCGCTCCGTTGACAACGAAAAATTCTGAAATTCTGAAACTTTCAAAAATTGAGAAAAACAGTAAATAAATAGATTTTTATTTTCTAAAAAATTGAAAAATCGGAAAAACAC</canonical_amplicon>
		<polymorphic_amplicon>TACCGCACTCTCTATAGCTTTTTTTTGTTCCCATATTTTTTGGATTTTTGTTTAAAAAATCGATTTTCTAGGCGTTTTATATGCATTTWCATTGTAATTTTTATAATTATTATTCACACAATAAATGTTGACAATCGCGCTCCGTTGACAACGAAAAATTCTGAAATTCTGAAACTTTCAAAAATTGAGAAAAACAGTAAATAAATAGATTTTTATTTTCTAAAAAATTGAAAAATCGGAAAAACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37115</snp_id>
        <super_contig>c011800915.Contig1</super_contig>
        <contig_pos>38839</contig_pos>
        <strand></strand>
        <context>agcatctcta[G/A]aatcyatttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTA</left_flank>
        <right_flank>AATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAATTAATTTATTACATTTGGATTCATTAATTACCAAAAAAAAACACCTTGTTAAAGGCGATGATTAATTAAATGTCAATTTTTCAAAAAAAAAAAACATATATATAAAAAAAAATTATTGAGTTCTAAAAAGATAGCAATTAAGGCCGGACTGGGAGTGAAGACAGTAGCTTGTTGTGGAGGTGACAAATGAGAATGCGCCTTGAGAACAAACTACAGTAAACCGACCGCCCAATTCTTGTTCGGCCGCCTCGACCAAAGCGATTTTGACGGAGGATGACTCGCCGGTGGTCATTTCCTGGAATTTTTGGAAAATTTGAAAAAAAATTTTTTTCAAAATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGATACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCG</canonical>
            <polymorphic>GAAATTAATTTATTACATTTGGATTCATTAATTACCAAAAAAAAACACCTTGTTAAAGGCGATGATTAATTAAATGTCAATTTTTCAAAAAAAAAAAACATATATATAAAAAAAAATTATTGAGTTCTAAAAAGATAGCAATTAAGGCCGGACTGGGAGTGAAGACAGTAGCTTGTTGTGGAGGTGACAAATGAGAATGCGCCTTGAGAACAAACTACAGTAAACCGACCGCCCAATTCTTGTTCGGCCGCCTCGACCAAAGCGATTTTGACGGAGGATGACTCGCCGGTGGTCATTTCCTGGAATTTTTGGAAAATTTGAAAAAAAATTTTTTTCAAAATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTARAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGATACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 488 9</canonical_bands>
                <polymorphic_bands>512 488</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>500 258 220 22</canonical_bands>
                <polymorphic_bands>720 258 22</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>497 179 143 98 44 39</canonical_bands>
                <polymorphic_bands>676 143 98 44 39</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 478 22</canonical_bands>
                <polymorphic_bands>978 22</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTCTGAACTTTTGGACTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTCGGGAAACTAACTAAG</pcr_primer_p2>
		<pcr_amplicon_size>348</pcr_amplicon_size>
		<canonical_amplicon>AATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>AATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTARAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37116</snp_id>
        <super_contig>c011800915.Contig1</super_contig>
        <contig_pos>38844</contig_pos>
        <strand></strand>
        <context>ctctaraatc[C/T]atttttcagc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATC</left_flank>
        <right_flank>ATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAAC</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTTATTACATTTGGATTCATTAATTACCAAAAAAAAACACCTTGTTAAAGGCGATGATTAATTAAATGTCAATTTTTCAAAAAAAAAAAACATATATATAAAAAAAAATTATTGAGTTCTAAAAAGATAGCAATTAAGGCCGGACTGGGAGTGAAGACAGTAGCTTGTTGTGGAGGTGACAAATGAGAATGCGCCTTGAGAACAAACTACAGTAAACCGACCGCCCAATTCTTGTTCGGCCGCCTCGACCAAAGCGATTTTGACGGAGGATGACTCGCCGGTGGTCATTTCCTGGAATTTTTGGAAAATTTGAAAAAAAATTTTTTTCAAAATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGATACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTT</canonical>
            <polymorphic>TAATTTATTACATTTGGATTCATTAATTACCAAAAAAAAACACCTTGTTAAAGGCGATGATTAATTAAATGTCAATTTTTCAAAAAAAAAAAACATATATATAAAAAAAAATTATTGAGTTCTAAAAAGATAGCAATTAAGGCCGGACTGGGAGTGAAGACAGTAGCTTGTTGTGGAGGTGACAAATGAGAATGCGCCTTGAGAACAAACTACAGTAAACCGACCGCCCAATTCTTGTTCGGCCGCCTCGACCAAAGCGATTTTGACGGAGGATGACTCGCCGGTGGTCATTTCCTGGAATTTTTGGAAAATTTGAAAAAAAATTTTTTTCAAAATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCYATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGATACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTCTGAACTTTTGGACTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTCGGGAAACTAACTAAG</pcr_primer_p2>
		<pcr_amplicon_size>348</pcr_amplicon_size>
		<canonical_amplicon>AATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>AATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCYATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37117</snp_id>
        <super_contig>c011800915.Contig1</super_contig>
        <contig_pos>38873</contig_pos>
        <strand></strand>
        <context>aaactaaact[C/T]raacgcgraa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACT</left_flank>
        <right_flank>AAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAAAAAAAACACCTTGTTAAAGGCGATGATTAATTAAATGTCAATTTTTCAAAAAAAAAAAACATATATATAAAAAAAAATTATTGAGTTCTAAAAAGATAGCAATTAAGGCCGGACTGGGAGTGAAGACAGTAGCTTGTTGTGGAGGTGACAAATGAGAATGCGCCTTGAGAACAAACTACAGTAAACCGACCGCCCAATTCTTGTTCGGCCGCCTCGACCAAAGCGATTTTGACGGAGGATGACTCGCCGGTGGTCATTTCCTGGAATTTTTGGAAAATTTGAAAAAAAATTTTTTTCAAAATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGATACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAAAAATGTTGACCGAAAATTCGGGTTTT</canonical>
            <polymorphic>CCAAAAAAAAACACCTTGTTAAAGGCGATGATTAATTAAATGTCAATTTTTCAAAAAAAAAAAACATATATATAAAAAAAAATTATTGAGTTCTAAAAAGATAGCAATTAAGGCCGGACTGGGAGTGAAGACAGTAGCTTGTTGTGGAGGTGACAAATGAGAATGCGCCTTGAGAACAAACTACAGTAAACCGACCGCCCAATTCTTGTTCGGCCGCCTCGACCAAAGCGATTTTGACGGAGGATGACTCGCCGGTGGTCATTTCCTGGAATTTTTGGAAAATTTGAAAAAAAATTTTTTTCAAAATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTYAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGATACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAAAAATGTTGACCGAAAATTCGGGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTCTGAACTTTTGGACTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTCGGGAAACTAACTAAG</pcr_primer_p2>
		<pcr_amplicon_size>348</pcr_amplicon_size>
		<canonical_amplicon>AATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>AATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTYAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37118</snp_id>
        <super_contig>c011800915.Contig1</super_contig>
        <contig_pos>38874</contig_pos>
        <strand></strand>
        <context>aactaaacty[A/G]aacgcgraag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTC</left_flank>
        <right_flank>AACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTG</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAAAAAACACCTTGTTAAAGGCGATGATTAATTAAATGTCAATTTTTCAAAAAAAAAAAACATATATATAAAAAAAAATTATTGAGTTCTAAAAAGATAGCAATTAAGGCCGGACTGGGAGTGAAGACAGTAGCTTGTTGTGGAGGTGACAAATGAGAATGCGCCTTGAGAACAAACTACAGTAAACCGACCGCCCAATTCTTGTTCGGCCGCCTCGACCAAAGCGATTTTGACGGAGGATGACTCGCCGGTGGTCATTTCCTGGAATTTTTGGAAAATTTGAAAAAAAATTTTTTTCAAAATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGATACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAAAAATGTTGACCGAAAATTCGGGTTTTA</canonical>
            <polymorphic>CAAAAAAAAACACCTTGTTAAAGGCGATGATTAATTAAATGTCAATTTTTCAAAAAAAAAAAACATATATATAAAAAAAAATTATTGAGTTCTAAAAAGATAGCAATTAAGGCCGGACTGGGAGTGAAGACAGTAGCTTGTTGTGGAGGTGACAAATGAGAATGCGCCTTGAGAACAAACTACAGTAAACCGACCGCCCAATTCTTGTTCGGCCGCCTCGACCAAAGCGATTTTGACGGAGGATGACTCGCCGGTGGTCATTTCCTGGAATTTTTGGAAAATTTGAAAAAAAATTTTTTTCAAAATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCRAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGATACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAAAAATGTTGACCGAAAATTCGGGTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTCTGAACTTTTGGACTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTCGGGAAACTAACTAAG</pcr_primer_p2>
		<pcr_amplicon_size>348</pcr_amplicon_size>
		<canonical_amplicon>AATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>AATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCRAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37119</snp_id>
        <super_contig>c011800915.Contig1</super_contig>
        <contig_pos>38881</contig_pos>
        <strand></strand>
        <context>ctyraacgcg[A/G]aagtagctcg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCG</left_flank>
        <right_flank>AAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATT</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACACCTTGTTAAAGGCGATGATTAATTAAATGTCAATTTTTCAAAAAAAAAAAACATATATATAAAAAAAAATTATTGAGTTCTAAAAAGATAGCAATTAAGGCCGGACTGGGAGTGAAGACAGTAGCTTGTTGTGGAGGTGACAAATGAGAATGCGCCTTGAGAACAAACTACAGTAAACCGACCGCCCAATTCTTGTTCGGCCGCCTCGACCAAAGCGATTTTGACGGAGGATGACTCGCCGGTGGTCATTTCCTGGAATTTTTGGAAAATTTGAAAAAAAATTTTTTTCAAAATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGATACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAAAAATGTTGACCGAAAATTCGGGTTTTAGCGATTT</canonical>
            <polymorphic>AAACACCTTGTTAAAGGCGATGATTAATTAAATGTCAATTTTTCAAAAAAAAAAAACATATATATAAAAAAAAATTATTGAGTTCTAAAAAGATAGCAATTAAGGCCGGACTGGGAGTGAAGACAGTAGCTTGTTGTGGAGGTGACAAATGAGAATGCGCCTTGAGAACAAACTACAGTAAACCGACCGCCCAATTCTTGTTCGGCCGCCTCGACCAAAGCGATTTTGACGGAGGATGACTCGCCGGTGGTCATTTCCTGGAATTTTTGGAAAATTTGAAAAAAAATTTTTTTCAAAATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGRAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGATACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAAAAATGTTGACCGAAAATTCGGGTTTTAGCGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTCTGAACTTTTGGACTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTCGGGAAACTAACTAAG</pcr_primer_p2>
		<pcr_amplicon_size>348</pcr_amplicon_size>
		<canonical_amplicon>AATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>AATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGRAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37120</snp_id>
        <super_contig>c011800915.Contig1</super_contig>
        <contig_pos>38909</contig_pos>
        <strand></strand>
        <context>cgaaattctg[A/G]aatattacgt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTG</left_flank>
        <right_flank>AATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAATGTCAATTTTTCAAAAAAAAAAAACATATATATAAAAAAAAATTATTGAGTTCTAAAAAGATAGCAATTAAGGCCGGACTGGGAGTGAAGACAGTAGCTTGTTGTGGAGGTGACAAATGAGAATGCGCCTTGAGAACAAACTACAGTAAACCGACCGCCCAATTCTTGTTCGGCCGCCTCGACCAAAGCGATTTTGACGGAGGATGACTCGCCGGTGGTCATTTCCTGGAATTTTTGGAAAATTTGAAAAAAAATTTTTTTCAAAATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGATACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAAAAATGTTGACCGAAAATTCGGGTTTTAGCGATTTTTTGCGATTTTCGCCATTTCTTCAAAAA</canonical>
            <polymorphic>TAAATGTCAATTTTTCAAAAAAAAAAAACATATATATAAAAAAAAATTATTGAGTTCTAAAAAGATAGCAATTAAGGCCGGACTGGGAGTGAAGACAGTAGCTTGTTGTGGAGGTGACAAATGAGAATGCGCCTTGAGAACAAACTACAGTAAACCGACCGCCCAATTCTTGTTCGGCCGCCTCGACCAAAGCGATTTTGACGGAGGATGACTCGCCGGTGGTCATTTCCTGGAATTTTTGGAAAATTTGAAAAAAAATTTTTTTCAAAATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGRAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGATACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAAAAATGTTGACCGAAAATTCGGGTTTTAGCGATTTTTTGCGATTTTCGCCATTTCTTCAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>275 235 179 169 47 41 30 24</canonical_bands>
                <polymorphic_bands>348 275 235 47 41 30 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTCTGAACTTTTGGACTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTCGGGAAACTAACTAAG</pcr_primer_p2>
		<pcr_amplicon_size>348</pcr_amplicon_size>
		<canonical_amplicon>AATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>AATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGRAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37121</snp_id>
        <super_contig>c011800915.Contig1</super_contig>
        <contig_pos>38951</contig_pos>
        <strand></strand>
        <context>ataaaaaaaa[A/G]tatgaatttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAA</left_flank>
        <right_flank>TATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTATTGAGTTCTAAAAAGATAGCAATTAAGGCCGGACTGGGAGTGAAGACAGTAGCTTGTTGTGGAGGTGACAAATGAGAATGCGCCTTGAGAACAAACTACAGTAAACCGACCGCCCAATTCTTGTTCGGCCGCCTCGACCAAAGCGATTTTGACGGAGGATGACTCGCCGGTGGTCATTTCCTGGAATTTTTGGAAAATTTGAAAAAAAATTTTTTTCAAAATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGATACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAAAAATGTTGACCGAAAATTCGGGTTTTAGCGATTTTTTGCGATTTTCGCCATTTCTTCAAAAAAAAATCAATCCGTAAAAGTCGTTTTTCGAATTTTAAACGATT</canonical>
            <polymorphic>AAAATTATTGAGTTCTAAAAAGATAGCAATTAAGGCCGGACTGGGAGTGAAGACAGTAGCTTGTTGTGGAGGTGACAAATGAGAATGCGCCTTGAGAACAAACTACAGTAAACCGACCGCCCAATTCTTGTTCGGCCGCCTCGACCAAAGCGATTTTGACGGAGGATGACTCGCCGGTGGTCATTTCCTGGAATTTTTGGAAAATTTGAAAAAAAATTTTTTTCAAAATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAARTATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGATACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAAAAATGTTGACCGAAAATTCGGGTTTTAGCGATTTTTTGCGATTTTCGCCATTTCTTCAAAAAAAAATCAATCCGTAAAAGTCGTTTTTCGAATTTTAAACGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTCTGAACTTTTGGACTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTCGGGAAACTAACTAAG</pcr_primer_p2>
		<pcr_amplicon_size>348</pcr_amplicon_size>
		<canonical_amplicon>AATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>AATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAARTATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37122</snp_id>
        <super_contig>c011800915.Contig1</super_contig>
        <contig_pos>39088</contig_pos>
        <strand>+</strand>
        <context>AGCCGCTCAG[A/C]YACATGACAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAG</left_flank>
        <right_flank>TACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCTCGACCAAAGCGATTTTGACGGAGGATGACTCGCCGGTGGTCATTTCCTGGAATTTTTGGAAAATTTGAAAAAAAATTTTTTTCAAAATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGATACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAAAAATGTTGACCGAAAATTCGGGTTTTAGCGATTTTTTGCGATTTTCGCCATTTCTTCAAAAAAAAATCAATCCGTAAAAGTCGTTTTTCGAATTTTAAACGATTTTTAAATTGAAAAATTCAAACTGCAAGAATTTTTGTGCAACGGAGCGCGTTTGCGAAAAATTGTTAAAATTTGGTTTTTTCGATTTTCCTCGTTTTTTAACGGAATTTCTTCTGAGAAAACTGCTTTTTTCTCAGCT</canonical>
            <polymorphic>GCCTCGACCAAAGCGATTTTGACGGAGGATGACTCGCCGGTGGTCATTTCCTGGAATTTTTGGAAAATTTGAAAAAAAATTTTTTTCAAAATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGMTACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAAAAATGTTGACCGAAAATTCGGGTTTTAGCGATTTTTTGCGATTTTCGCCATTTCTTCAAAAAAAAATCAATCCGTAAAAGTCGTTTTTCGAATTTTAAACGATTTTTAAATTGAAAAATTCAAACTGCAAGAATTTTTGTGCAACGGAGCGCGTTTGCGAAAAATTGTTAAAATTTGGTTTTTTCGATTTTCCTCGTTTTTTAACGGAATTTCTTCTGAGAAAACTGCTTTTTTCTCAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>390 179 169 96 47 41 30 24 24</canonical_bands>
                <polymorphic_bands>390 220 169 96 47 30 24 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTAGTTAGTTTCCCGAATTTT</pcr_primer_p1>
		<pcr_primer_p2>CCTTCTGGATTTTTATCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGATACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGG</canonical_amplicon>
		<polymorphic_amplicon>ACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGMTACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37123</snp_id>
        <super_contig>c011800915.Contig1</super_contig>
        <contig_pos>39089</contig_pos>
        <strand>+</strand>
        <context>GCCGCTCAGM[C/T]ACATGACATC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGA</left_flank>
        <right_flank>ACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCGACCAAAGCGATTTTGACGGAGGATGACTCGCCGGTGGTCATTTCCTGGAATTTTTGGAAAATTTGAAAAAAAATTTTTTTCAAAATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGATACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAAAAATGTTGACCGAAAATTCGGGTTTTAGCGATTTTTTGCGATTTTCGCCATTTCTTCAAAAAAAAATCAATCCGTAAAAGTCGTTTTTCGAATTTTAAACGATTTTTAAATTGAAAAATTCAAACTGCAAGAATTTTTGTGCAACGGAGCGCGTTTGCGAAAAATTGTTAAAATTTGGTTTTTTCGATTTTCCTCGTTTTTTAACGGAATTTCTTCTGAGAAAACTGCTTTTTTCTCAGCTA</canonical>
            <polymorphic>CCTCGACCAAAGCGATTTTGACGGAGGATGACTCGCCGGTGGTCATTTCCTGGAATTTTTGGAAAATTTGAAAAAAAATTTTTTTCAAAATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGAYACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAAAAATGTTGACCGAAAATTCGGGTTTTAGCGATTTTTTGCGATTTTCGCCATTTCTTCAAAAAAAAATCAATCCGTAAAAGTCGTTTTTCGAATTTTAAACGATTTTTAAATTGAAAAATTCAAACTGCAAGAATTTTTGTGCAACGGAGCGCGTTTGCGAAAAATTGTTAAAATTTGGTTTTTTCGATTTTCCTCGTTTTTTAACGGAATTTCTTCTGAGAAAACTGCTTTTTTCTCAGCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTAGTTAGTTTCCCGAATTTT</pcr_primer_p1>
		<pcr_primer_p2>CCTTCTGGATTTTTATCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGATACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGG</canonical_amplicon>
		<polymorphic_amplicon>ACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGAYACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37124</snp_id>
        <super_contig>c011800915.Contig1</super_contig>
        <contig_pos>39170</contig_pos>
        <strand>+</strand>
        <context>CGATTTTTTT[A/T]ATCGGATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTT</left_flank>
        <right_flank>ATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCAAAATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGATACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAAAAATGTTGACCGAAAATTCGGGTTTTAGCGATTTTTTGCGATTTTCGCCATTTCTTCAAAAAAAAATCAATCCGTAAAAGTCGTTTTTCGAATTTTAAACGATTTTTAAATTGAAAAATTCAAACTGCAAGAATTTTTGTGCAACGGAGCGCGTTTGCGAAAAATTGTTAAAATTTGGTTTTTTCGATTTTCCTCGTTTTTTAACGGAATTTCTTCTGAGAAAACTGCTTTTTTCTCAGCTAAAACATAAAAAAATCGGTTTTTTTAGATTTGGTGCCACGCAAGCGCGCTCTTTTGAACAAAAATAATTTGCAGTTCGTTTT</canonical>
            <polymorphic>TTTTCAAAATTTCTGAACTTTTGGACTTTTTATTGTCGGATTAAAAAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGATACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTWATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAAAAATGTTGACCGAAAATTCGGGTTTTAGCGATTTTTTGCGATTTTCGCCATTTCTTCAAAAAAAAATCAATCCGTAAAAGTCGTTTTTCGAATTTTAAACGATTTTTAAATTGAAAAATTCAAACTGCAAGAATTTTTGTGCAACGGAGCGCGTTTGCGAAAAATTGTTAAAATTTGGTTTTTTCGATTTTCCTCGTTTTTTAACGGAATTTCTTCTGAGAAAACTGCTTTTTTCTCAGCTAAAACATAAAAAAATCGGTTTTTTTAGATTTGGTGCCACGCAAGCGCGCTCTTTTGAACAAAAATAATTTGCAGTTCGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTAGTTAGTTTCCCGAATTTT</pcr_primer_p1>
		<pcr_primer_p2>CCTTCTGGATTTTTATCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGATACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGG</canonical_amplicon>
		<polymorphic_amplicon>ACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGATACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTWATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37125</snp_id>
        <super_contig>c011800915.Contig1</super_contig>
        <contig_pos>39215</contig_pos>
        <strand>+</strand>
        <context>TGGATTATTA[A/G]CATATAAGCS</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTA</left_flank>
        <right_flank>CATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGATACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAAAAATGTTGACCGAAAATTCGGGTTTTAGCGATTTTTTGCGATTTTCGCCATTTCTTCAAAAAAAAATCAATCCGTAAAAGTCGTTTTTCGAATTTTAAACGATTTTTAAATTGAAAAATTCAAACTGCAAGAATTTTTGTGCAACGGAGCGCGTTTGCGAAAAATTGTTAAAATTTGGTTTTTTCGATTTTCCTCGTTTTTTAACGGAATTTCTTCTGAGAAAACTGCTTTTTTCTCAGCTAAAACATAAAAAAATCGGTTTTTTTAGATTTGGTGCCACGCAAGCGCGCTCTTTTGAACAAAAATAATTTGCAGTTCGTTTTTCGATTTTTTTTTGCTATTTTTGTAGGAACTGACTGTTTTTGAGG</canonical>
            <polymorphic>AAAATTGGCACCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGATACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTARCATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAAAAATGTTGACCGAAAATTCGGGTTTTAGCGATTTTTTGCGATTTTCGCCATTTCTTCAAAAAAAAATCAATCCGTAAAAGTCGTTTTTCGAATTTTAAACGATTTTTAAATTGAAAAATTCAAACTGCAAGAATTTTTGTGCAACGGAGCGCGTTTGCGAAAAATTGTTAAAATTTGGTTTTTTCGATTTTCCTCGTTTTTTAACGGAATTTCTTCTGAGAAAACTGCTTTTTTCTCAGCTAAAACATAAAAAAATCGGTTTTTTTAGATTTGGTGCCACGCAAGCGCGCTCTTTTGAACAAAAATAATTTGCAGTTCGTTTTTCGATTTTTTTTTGCTATTTTTGTAGGAACTGACTGTTTTTGAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>270 167 163 98 70 64 62 62 33 11</canonical_bands>
                <polymorphic_bands>270 167 163 134 98 62 62 33 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATTAGCATGACACTATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTAAAGCTCGCTCCAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTARCATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37126</snp_id>
        <super_contig>c011800915.Contig1</super_contig>
        <contig_pos>39225</contig_pos>
        <strand>+</strand>
        <context>RCATATAAGC[C/G]GAAAAAGATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGC</left_flank>
        <right_flank>GAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGATACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAAAAATGTTGACCGAAAATTCGGGTTTTAGCGATTTTTTGCGATTTTCGCCATTTCTTCAAAAAAAAATCAATCCGTAAAAGTCGTTTTTCGAATTTTAAACGATTTTTAAATTGAAAAATTCAAACTGCAAGAATTTTTGTGCAACGGAGCGCGTTTGCGAAAAATTGTTAAAATTTGGTTTTTTCGATTTTCCTCGTTTTTTAACGGAATTTCTTCTGAGAAAACTGCTTTTTTCTCAGCTAAAACATAAAAAAATCGGTTTTTTTAGATTTGGTGCCACGCAAGCGCGCTCTTTTGAACAAAAATAATTTGCAGTTCGTTTTTCGATTTTTTTTTGCTATTTTTGTAGGAACTGACTGTTTTTGAGGTGAAAATGTG</canonical>
            <polymorphic>CCTGAAAATCTCGGAGACGGCGCTCGTGTCGATTTACGAGGGGGCGGAGCGAAAACGGATACTGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGATACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCSGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAAAAATGTTGACCGAAAATTCGGGTTTTAGCGATTTTTTGCGATTTTCGCCATTTCTTCAAAAAAAAATCAATCCGTAAAAGTCGTTTTTCGAATTTTAAACGATTTTTAAATTGAAAAATTCAAACTGCAAGAATTTTTGTGCAACGGAGCGCGTTTGCGAAAAATTGTTAAAATTTGGTTTTTTCGATTTTCCTCGTTTTTTAACGGAATTTCTTCTGAGAAAACTGCTTTTTTCTCAGCTAAAACATAAAAAAATCGGTTTTTTTAGATTTGGTGCCACGCAAGCGCGCTCTTTTGAACAAAAATAATTTGCAGTTCGTTTTTCGATTTTTTTTTGCTATTTTTGTAGGAACTGACTGTTTTTGAGGTGAAAATGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>245 162 153 139 118 91 53 29 10</canonical_bands>
                <polymorphic_bands>245 209 162 153 139 53 29 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATTAGCATGACACTATCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTAAAGCTCGCTCCAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCSGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37127</snp_id>
        <super_contig>c011800915.Contig1</super_contig>
        <contig_pos>39287</contig_pos>
        <strand>+</strand>
        <context>CCGTTTTAAA[A/G]GGTTTTTTCR</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAA</left_flank>
        <right_flank>GGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGATACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAAAAATGTTGACCGAAAATTCGGGTTTTAGCGATTTTTTGCGATTTTCGCCATTTCTTCAAAAAAAAATCAATCCGTAAAAGTCGTTTTTCGAATTTTAAACGATTTTTAAATTGAAAAATTCAAACTGCAAGAATTTTTGTGCAACGGAGCGCGTTTGCGAAAAATTGTTAAAATTTGGTTTTTTCGATTTTCCTCGTTTTTTAACGGAATTTCTTCTGAGAAAACTGCTTTTTTCTCAGCTAAAACATAAAAAAATCGGTTTTTTTAGATTTGGTGCCACGCAAGCGCGCTCTTTTGAACAAAAATAATTTGCAGTTCGTTTTTCGATTTTTTTTTGCTATTTTTGTAGGAACTGACTGTTTTTGAGGTGAAAATGTGTAGGTCAGCCTAATGAACATAGGAAATGAGAAAAAATTGTGAAAAACTACAAAAATCGATAA</canonical>
            <polymorphic>TGTGAACCAAATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGATACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAARGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAAAAATGTTGACCGAAAATTCGGGTTTTAGCGATTTTTTGCGATTTTCGCCATTTCTTCAAAAAAAAATCAATCCGTAAAAGTCGTTTTTCGAATTTTAAACGATTTTTAAATTGAAAAATTCAAACTGCAAGAATTTTTGTGCAACGGAGCGCGTTTGCGAAAAATTGTTAAAATTTGGTTTTTTCGATTTTCCTCGTTTTTTAACGGAATTTCTTCTGAGAAAACTGCTTTTTTCTCAGCTAAAACATAAAAAAATCGGTTTTTTTAGATTTGGTGCCACGCAAGCGCGCTCTTTTGAACAAAAATAATTTGCAGTTCGTTTTTCGATTTTTTTTTGCTATTTTTGTAGGAACTGACTGTTTTTGAGGTGAAAATGTGTAGGTCAGCCTAATGAACATAGGAAATGAGAAAAAATTGTGAAAAACTACAAAAATCGATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGTCGAGAAACTGGATTAT</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCGAAAAACGACTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAAAAATGTTGACCGAAAATTCGGGTTTTAGCGATTTTTTGCGATTTTCGCCATTTCTTCAAAAAAAAATCAATCCGTAAAAGTCGTTTTTCGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>GGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAARGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAAAAATGTTGACCGAAAATTCGGGTTTTAGCGATTTTTTGCGATTTTCGCCATTTCTTCAAAAAAAAATCAATCCGTAAAAGTCGTTTTTCGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37128</snp_id>
        <super_contig>c011800915.Contig1</super_contig>
        <contig_pos>39297</contig_pos>
        <strand>+</strand>
        <context>RGGTTTTTTC[A/G]ACTCAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTC</left_flank>
        <right_flank>ACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGATACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAAAAATGTTGACCGAAAATTCGGGTTTTAGCGATTTTTTGCGATTTTCGCCATTTCTTCAAAAAAAAATCAATCCGTAAAAGTCGTTTTTCGAATTTTAAACGATTTTTAAATTGAAAAATTCAAACTGCAAGAATTTTTGTGCAACGGAGCGCGTTTGCGAAAAATTGTTAAAATTTGGTTTTTTCGATTTTCCTCGTTTTTTAACGGAATTTCTTCTGAGAAAACTGCTTTTTTCTCAGCTAAAACATAAAAAAATCGGTTTTTTTAGATTTGGTGCCACGCAAGCGCGCTCTTTTGAACAAAAATAATTTGCAGTTCGTTTTTCGATTTTTTTTTGCTATTTTTGTAGGAACTGACTGTTTTTGAGGTGAAAATGTGTAGGTCAGCCTAATGAACATAGGAAATGAGAAAAAATTGTGAAAAACTACAAAAATCGATAAAAAGTTACTA</canonical>
            <polymorphic>ATTTTGATTTCTTGGTATAAAAATGATCGCTAGCATCTCTAGAATCCATTTTTCAGCAAAAAAAAAAACTAAACTCAAACGCGAAAGTAGCTCGAACGAGCCGAAATTCTGAAATATTACGTTTTTGCCGCATTTTTACGTAGATAAAAAAAAATATGAATTTTTCAAATTCTCAGGTGTCACTTTTTTAATTCGACAATACTTACTTAGTTAGTTTCCCGAATTTTCCTTGCCATTGTCAGCGCCGGCGCGGCCGACCGCGCCGCTGACCGCGCCGCTTAGCCGCTCAGATACATGACATCATCATTAGCATGACACTATCTTTTTTCTGATGGCTATCATATAGAAAATTAACCGGTTCTCGATTTTTTTTATCGGATTTTCTCATTACGCAGGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCRACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAAAAATGTTGACCGAAAATTCGGGTTTTAGCGATTTTTTGCGATTTTCGCCATTTCTTCAAAAAAAAATCAATCCGTAAAAGTCGTTTTTCGAATTTTAAACGATTTTTAAATTGAAAAATTCAAACTGCAAGAATTTTTGTGCAACGGAGCGCGTTTGCGAAAAATTGTTAAAATTTGGTTTTTTCGATTTTCCTCGTTTTTTAACGGAATTTCTTCTGAGAAAACTGCTTTTTTCTCAGCTAAAACATAAAAAAATCGGTTTTTTTAGATTTGGTGCCACGCAAGCGCGCTCTTTTGAACAAAAATAATTTGCAGTTCGTTTTTCGATTTTTTTTTGCTATTTTTGTAGGAACTGACTGTTTTTGAGGTGAAAATGTGTAGGTCAGCCTAATGAACATAGGAAATGAGAAAAAATTGTGAAAAACTACAAAAATCGATAAAAAGTTACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGTCGAGAAACTGGATTAT</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCGAAAAACGACTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCAACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAAAAATGTTGACCGAAAATTCGGGTTTTAGCGATTTTTTGCGATTTTCGCCATTTCTTCAAAAAAAAATCAATCCGTAAAAGTCGTTTTTCGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>GGTGTCGAGAAACTGGATTATTAACATATAAGCCGAAAAAGATAAAAATCCAGAAGGGAAAAGAAAGTGTCAATGATCAAATAATCCGTTTTAAAGGGTTTTTTCRACTCAAAAATTCAAATTTCAAAGGTTTTTGTGCAGTGGAGCGAGCTTTAAAAATGTTGACCGAAAATTCGGGTTTTAGCGATTTTTTGCGATTTTCGCCATTTCTTCAAAAAAAAATCAATCCGTAAAAGTCGTTTTTCGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37129</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>35138</contig_pos>
        <strand></strand>
        <context>agtgtatttg[T/G]tatataatta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AACTGAGAATTCCAACACTTTTTTACTGGAATTTGTTCAGAGTGTATTTG</left_flank>
        <right_flank>TATATAATTATAGGCTTAGGCTGAAACGCCTTGTTCACATCAGTGCCGGA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGAACATTTATCTTATCGTTGTACGTTTGATACTTAGGCAATGGAAAAAAAATCAGAAGTGAAATCTATCATTCACTGGGGCGCGAATTTGAAACTGGAAAGAACAATTTTTTAAATAACATAATTATATTCCAATCTTTCATTTTCTAGAATCTTCGGCTCTTTCCGGGAAGATCGGTTCCAAAGCGGGACCGTCGGTCCTATCATCGGACCGCCGGTCCCAACGAATTGCGACAACGGTCCCATTGTATCGACAACGGTCCTATTGTTCCGACAACGGTCCCAATGTCCCGAAAACGGTCCCAACGTTCCGACAACGGTTCCAAGGGTACGACAACGGTCCCAACCAGACTTAATTTTGAAAACCGATCGGAAATATCGGAAACTGTAGTTTTTGTTTCAACTTAGAAACACATTTCAGCAACAAAAACGAACATTTTGCTGATAACTGAGAATTCCAACACTTTTTTACTGGAATTTGTTCAGAGTGTATTTGTTATATAATTATAGGCTTAGGCTGAAACGCCTTGTTCACATCAGTGCCGGAAAAAGGCGTTTTGGCCTAAGCCTACAATACAAAAAACATAAAAACTCCTGTCAAAAGTTACTGAAATTCTCAAGNNNNNNNNNNATCAGCCAACGCCAACCAACACCAAAAATTTTTTAATGTCAGCTCGAATTTTTTCGCTGTAGCATTTTTCTTTTTTTTGTGCCTCGGTATCACTTCTGAGGCGTCTTTTAAATTTCCAGTATGCTTGTTTACACTTCTTTCCCGTAGAGAGGGTATTCTGGTCATTGATGGAATTCCTAATTTAATTTCCCTTTAAAATTTAGTTCATGAATAAATTTTCAGATACCGGAGTTTCAATGATAGTCGTCTAAACACGCTGTTTAATGTTTAACGCTTTTTTCTCTCCCTACTCATCGATAAAACCCTTCAAAACCATTTTGAACCTTAAAATCTTTCCCTGAGCCTACAATACAAAAAACATAAAAA</canonical>
            <polymorphic>AATTGAACATTTATCTTATCGTTGTACGTTTGATACTTAGGCAATGGAAAAAAAATCAGAAGTGAAATCTATCATTCACTGGGGCGCGAATTTGAAACTGGAAAGAACAATTTTTTAAATAACATAATTATATTCCAATCTTTCATTTTCTAGAATCTTCGGCTCTTTCCGGGAAGATCGGTTCCAAAGCGGGACCGTCGGTCCTATCATCGGACCGCCGGTCCCAACGAATTGCGACAACGGTCCCATTGTATCGACAACGGTCCTATTGTTCCGACAACGGTCCCAATGTCCCGAAAACGGTCCCAACGTTCCGACAACGGTTCCAAGGGTACGACAACGGTCCCAACCAGACTTAATTTTGAAAACCGATCGGAAATATCGGAAACTGTAGTTTTTGTTTCAACTTAGAAACACATTTCAGCAACAAAAACGAACATTTTGCTGATAACTGAGAATTCCAACACTTTTTTACTGGAATTTGTTCAGAGTGTATTTGKTATATAATTATAGGCTTAGGCTGAAACGCCTTGTTCACATCAGTGCCGGAAAAAGGCGTTTTGGCCTAAGCCTACAATACAAAAAACATAAAAACTCCTGTCAAAAGTTACTGAAATTCTCAAGNNNNNNNNNNATCAGCCAACGCCAACCAACACCAAAAATTTTTTAATGTCAGCTCGAATTTTTTCGCTGTAGCATTTTTCTTTTTTTTGTGCCTCGGTATCACTTCTGAGGCGTCTTTTAAATTTCCAGTATGCTTGTTTACACTTCTTTCCCGTAGAGAGGGTATTCTGGTCATTGATGGAATTCCTAATTTAATTTCCCTTTAAAATTTAGTTCATGAATAAATTTTCAGATACCGGAGTTTCAATGATAGTCGTCTAAACACGCTGTTTAATGTTTAACGCTTTTTTCTCTCCCTACTCATCGATAAAACCCTTCAAAACCATTTTGAACCTTAAAATCTTTCCCTGAGCCTACAATACAAAAAACATAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTATATTCCAATCTTTCATTTTC</pcr_primer_p1>
		<pcr_primer_p2>AAATTCGAGCTGACATTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>560</pcr_amplicon_size>
		<canonical_amplicon>AATTATATTCCAATCTTTCATTTTCTAGAATCTTCGGCTCTTTCCGGGAAGATCGGTTCCAAAGCGGGACCGTCGGTCCTATCATCGGACCGCCGGTCCCAACGAATTGCGACAACGGTCCCATTGTATCGACAACGGTCCTATTGTTCCGACAACGGTCCCAATGTCCCGAAAACGGTCCCAACGTTCCGACAACGGTTCCAAGGGTACGACAACGGTCCCAACCAGACTTAATTTTGAAAACCGATCGGAAATATCGGAAACTGTAGTTTTTGTTTCAACTTAGAAACACATTTCAGCAACAAAAACGAACATTTTGCTGATAACTGAGAATTCCAACACTTTTTTACTGGAATTTGTTCAGAGTGTATTTGTTATATAATTATAGGCTTAGGCTGAAACGCCTTGTTCACATCAGTGCCGGAAAAAGGCGTTTTGGCCTAAGCCTACAATACAAAAAACATAAAAACTCCTGTCAAAAGTTACTGAAATTCTCAAGNNNNNNNNNNATCAGCCAACGCCAACCAACACCAAAAATTTTTTAATGTCAGCTCGAATTT</canonical_amplicon>
		<polymorphic_amplicon>AATTATATTCCAATCTTTCATTTTCTAGAATCTTCGGCTCTTTCCGGGAAGATCGGTTCCAAAGCGGGACCGTCGGTCCTATCATCGGACCGCCGGTCCCAACGAATTGCGACAACGGTCCCATTGTATCGACAACGGTCCTATTGTTCCGACAACGGTCCCAATGTCCCGAAAACGGTCCCAACGTTCCGACAACGGTTCCAAGGGTACGACAACGGTCCCAACCAGACTTAATTTTGAAAACCGATCGGAAATATCGGAAACTGTAGTTTTTGTTTCAACTTAGAAACACATTTCAGCAACAAAAACGAACATTTTGCTGATAACTGAGAATTCCAACACTTTTTTACTGGAATTTGTTCAGAGTGTATTTGKTATATAATTATAGGCTTAGGCTGAAACGCCTTGTTCACATCAGTGCCGGAAAAAGGCGTTTTGGCCTAAGCCTACAATACAAAAAACATAAAAACTCCTGTCAAAAGTTACTGAAATTCTCAAGNNNNNNNNNNATCAGCCAACGCCAACCAACACCAAAAATTTTTTAATGTCAGCTCGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37130</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>36605</contig_pos>
        <strand>+</strand>
        <context>TTTCAGGTGT[C/T]GTTTCTAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCAGTCTAATGAGTTCATTTTTGGTTTTTTCACACTATTTTCAGGTGT</left_flank>
        <right_flank>GTTTCTAAGAAATGTGCCTTTTTCTAAAGTTTCCCTGACATCTGCTATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCCACCCCCGAAAAACTCAAAGGACAAGGCTCCGTTGTGTTATTTGTCTGTTTTAATTTTTAAAACAATCATTTGACTTTTAAAAAACTTCGCTGATAAGAAACGGATTATGCATAATATGTTTTCTTTTTTGTCGTTTTTTACATAGTCCATTTTTAATTTTTTTTAAACAACAAGACTCTATGGTTCTCCATAACCTGCACAAAAAAAGAAAGATATACAAAACAACTTTGGGCGAAATCTAGATTAGTTTTTTTTCCGTATATTTTTCATACAACCTCCGTAATTCACTATCTTGGCAGAAGCTTACTTTTTTCTCCAAAAAGAATATCACTTTCTCATTAGACCTCTCTGAGATATTCCCATAATGAGAATGAGCAATACAAATCGACAAAGAAAGGGCATGTGTCCTATTGTAAAAAGGGTCTGTTCTAATTCATCAAATTCTTCCAGTCTAATGAGTTCATTTTTGGTTTTTTCACACTATTTTCAGGTGTCGTTTCTAAGAAATGTGCCTTTTTCTAAAGTTTCCCTGACATCTGCTATTAAAAACTGTCCACGATAGTCTTTTTCTGGTACTTTTTTAAAGAATTTTTTCCCGCGTTTTCCAATCGGAAGTAGAGCGCATTTGCAATAGTATCCAGTTTAAATATTCGACATTGAGTAAAAAAATATTCTGAAAGAACCAGTTGTATGCAACCACAGAAAAAACAATCATATTTCATTAGATAGTGCGTCACAGAAAGTTGTATCCAAAAACAAAATCAAATGTAGCTGAAAAATTGATCAAGTTGGATTATGATTACAATTTCAAATCTGCCAGAGAGAAGATTTTTATCTGATTGAGACTGTTTTATTCCAATCAAAATTTTTCAACCGAGATTAATTCTGATAACTTACCGTATTTGATCAAATACAAGCTCACCAAAACCGTCAACTTTGAGCTCAATTATCTCGGTTTCGGTGAATAATGTCGAAGATTTGTCAACTGATAAAAT</canonical>
            <polymorphic>CCTCCACCCCCGAAAAACTCAAAGGACAAGGCTCCGTTGTGTTATTTGTCTGTTTTAATTTTTAAAACAATCATTTGACTTTTAAAAAACTTCGCTGATAAGAAACGGATTATGCATAATATGTTTTCTTTTTTGTCGTTTTTTACATAGTCCATTTTTAATTTTTTTTAAACAACAAGACTCTATGGTTCTCCATAACCTGCACAAAAAAAGAAAGATATACAAAACAACTTTGGGCGAAATCTAGATTAGTTTTTTTTCCGTATATTTTTCATACAACCTCCGTAATTCACTATCTTGGCAGAAGCTTACTTTTTTCTCCAAAAAGAATATCACTTTCTCATTAGACCTCTCTGAGATATTCCCATAATGAGAATGAGCAATACAAATCGACAAAGAAAGGGCATGTGTCCTATTGTAAAAAGGGTCTGTTCTAATTCATCAAATTCTTCCAGTCTAATGAGTTCATTTTTGGTTTTTTCACACTATTTTCAGGTGTYGTTTCTAAGAAATGTGCCTTTTTCTAAAGTTTCCCTGACATCTGCTATTAAAAACTGTCCACGATAGTCTTTTTCTGGTACTTTTTTAAAGAATTTTTTCCCGCGTTTTCCAATCGGAAGTAGAGCGCATTTGCAATAGTATCCAGTTTAAATATTCGACATTGAGTAAAAAAATATTCTGAAAGAACCAGTTGTATGCAACCACAGAAAAAACAATCATATTTCATTAGATAGTGCGTCACAGAAAGTTGTATCCAAAAACAAAATCAAATGTAGCTGAAAAATTGATCAAGTTGGATTATGATTACAATTTCAAATCTGCCAGAGAGAAGATTTTTATCTGATTGAGACTGTTTTATTCCAATCAAAATTTTTCAACCGAGATTAATTCTGATAACTTACCGTATTTGATCAAATACAAGCTCACCAAAACCGTCAACTTTGAGCTCAATTATCTCGGTTTCGGTGAATAATGTCGAAGATTTGTCAACTGATAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAAAAGAATATCACTTTCTCA</pcr_primer_p1>
		<pcr_primer_p2>AAGACTATCGTGGACAGTTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCAAAAAGAATATCACTTTCTCATTAGACCTCTCTGAGATATTCCCATAATGAGAATGAGCAATACAAATCGACAAAGAAAGGGCATGTGTCCTATTGTAAAAAGGGTCTGTTCTAATTCATCAAATTCTTCCAGTCTAATGAGTTCATTTTTGGTTTTTTCACACTATTTTCAGGTGTCGTTTCTAAGAAATGTGCCTTTTTCTAAAGTTTCCCTGACATCTGCTATTAAAAACTGTCCACGATAGTCTT</canonical_amplicon>
		<polymorphic_amplicon>CCAAAAAGAATATCACTTTCTCATTAGACCTCTCTGAGATATTCCCATAATGAGAATGAGCAATACAAATCGACAAAGAAAGGGCATGTGTCCTATTGTAAAAAGGGTCTGTTCTAATTCATCAAATTCTTCCAGTCTAATGAGTTCATTTTTGGTTTTTTCACACTATTTTCAGGTGTYGTTTCTAAGAAATGTGCCTTTTTCTAAAGTTTCCCTGACATCTGCTATTAAAAACTGTCCACGATAGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37131</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>75196</contig_pos>
        <strand>+</strand>
        <context>AGTGAAATTA[A/G]AGAAAAAGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAGTGATAAGAGAAAGTTGCAGGGGAGTGATTGCGGAAAGTGAAATTA</left_flank>
        <right_flank>AGAAAAAGGGGGAAAATTCAAAAAACATGTTGAGAAGTTTTAACTGGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATTTTCTTTCTATTTCAGTAAAAATTCTGGTAATTTCAGTTTTTACTAGTTTCATGAAAAGGAGGTTGAAAAATAGAAGCCCATGGACTTCAATTGAAGGAAATACGGTAGCTACATTATTATTCAAAATTGTTTCTCCTCTTACCATTGAAAACTGTTAATTTCCAGACCTACACCACCGACTCTATTCTCAAGCGTGAGAATCAGAAGCTTCTCGAATGGCTCAAGAAAAAGGCCGGATCGAATACAGTTATTAACACAATTGGATCTAACTAGTAGACCAACCCTTCCTGTGATATTCAATAAATGCATGTTTTTTTCCCTTAATGTTTTTTGATAACATAATTTTGAAAACGGATAAAAAACGGGAATAAGTGAAAGTGATTGGGTGAAATCGAGGAAAAATTATGATGTTGCATAAAAAAGTGAGTGGGAGAGAAAAGAAAATGAAGTGATAAGAGAAAGTTGCAGGGGAGTGATTGCGGAAAGTGAAATTAGAGAAAAAGGGGGAAAATTCAAAAAACATGTTGAGAAGTTTTAACTGGAATAATTTGCAAGACAAAAACAGAAAAAAAACCTAATTTTGATACCAAGACTGAAGTTTGGATCTGTTTCTGAGTTTGGAGAGAGGTCTTAGAGTGCTTTGGTAAGCTTGTAAAAAGTTTAGATTAAAACAATTGGAGAAAATTTTTATTCGTTTTTTACAGCCCCATGTTGCACTGATAAAAACATCCCAATCTGTTAACACTCCAATAGGACGCCGCCAACTTGTCAACTTTGAGCTTGCATATCTTTGTTCCTGTGAAAGATAACAAAAAATGGTCCACTAAAAATGTTCATCATGATATCACAAATACTTTGTCAGTTTACCGCTTTTTGATATCTTTCACCGGAACAGATAAATTGGCTCAAAAAATGAAAGTTAGGGTGCCCTTCTATTACAGTTTTTACGGTTTTTTTTGTTTTGTACTCTACTGGATATCATAAAAATCTTGTTC</canonical>
            <polymorphic>ACATTTTCTTTCTATTTCAGTAAAAATTCTGGTAATTTCAGTTTTTACTAGTTTCATGAAAAGGAGGTTGAAAAATAGAAGCCCATGGACTTCAATTGAAGGAAATACGGTAGCTACATTATTATTCAAAATTGTTTCTCCTCTTACCATTGAAAACTGTTAATTTCCAGACCTACACCACCGACTCTATTCTCAAGCGTGAGAATCAGAAGCTTCTCGAATGGCTCAAGAAAAAGGCCGGATCGAATACAGTTATTAACACAATTGGATCTAACTAGTAGACCAACCCTTCCTGTGATATTCAATAAATGCATGTTTTTTTCCCTTAATGTTTTTTGATAACATAATTTTGAAAACGGATAAAAAACGGGAATAAGTGAAAGTGATTGGGTGAAATCGAGGAAAAATTATGATGTTGCATAAAAAAGTGAGTGGGAGAGAAAAGAAAATGAAGTGATAAGAGAAAGTTGCAGGGGAGTGATTGCGGAAAGTGAAATTARAGAAAAAGGGGGAAAATTCAAAAAACATGTTGAGAAGTTTTAACTGGAATAATTTGCAAGACAAAAACAGAAAAAAAACCTAATTTTGATACCAAGACTGAAGTTTGGATCTGTTTCTGAGTTTGGAGAGAGGTCTTAGAGTGCTTTGGTAAGCTTGTAAAAAGTTTAGATTAAAACAATTGGAGAAAATTTTTATTCGTTTTTTACAGCCCCATGTTGCACTGATAAAAACATCCCAATCTGTTAACACTCCAATAGGACGCCGCCAACTTGTCAACTTTGAGCTTGCATATCTTTGTTCCTGTGAAAGATAACAAAAAATGGTCCACTAAAAATGTTCATCATGATATCACAAATACTTTGTCAGTTTACCGCTTTTTGATATCTTTCACCGGAACAGATAAATTGGCTCAAAAAATGAAAGTTAGGGTGCCCTTCTATTACAGTTTTTACGGTTTTTTTTGTTTTGTACTCTACTGGATATCATAAAAATCTTGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCGAGGAAAAATTATGATG</pcr_primer_p1>
		<pcr_primer_p2>CTCTAAGACCTCTCTCCAAACTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAATCGAGGAAAAATTATGATGTTGCATAAAAAAGTGAGTGGGAGAGAAAAGAAAATGAAGTGATAAGAGAAAGTTGCAGGGGAGTGATTGCGGAAAGTGAAATTAGAGAAAAAGGGGGAAAATTCAAAAAACATGTTGAGAAGTTTTAACTGGAATAATTTGCAAGACAAAAACAGAAAAAAAACCTAATTTTGATACCAAGACTGAAGTTTGGATCTGTTTCTGAGTTTGGAGAGAGGTCTTAGAG</canonical_amplicon>
		<polymorphic_amplicon>AAATCGAGGAAAAATTATGATGTTGCATAAAAAAGTGAGTGGGAGAGAAAAGAAAATGAAGTGATAAGAGAAAGTTGCAGGGGAGTGATTGCGGAAAGTGAAATTARAGAAAAAGGGGGAAAATTCAAAAAACATGTTGAGAAGTTTTAACTGGAATAATTTGCAAGACAAAAACAGAAAAAAAACCTAATTTTGATACCAAGACTGAAGTTTGGATCTGTTTCTGAGTTTGGAGAGAGGTCTTAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37132</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>85616</contig_pos>
        <strand>+</strand>
        <context>CTTGAATGTC[A/G]ATTTTCCGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCTTTGAGAAACCTATGCCACAGCATCAGGACGCTTTTTCTTGAATGTC</left_flank>
        <right_flank>ATTTTCCGGATATTTATGGTAGCCTAACTTTCACATGTTGAGTTTTCTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAACTATTACCAATGTTCATCAACTCATATTTACGGCTACAATTTTTCAGGTGAGTATTAAAAGTTTGTCATATGGCATTAACTGTATTTCATCTTATAAAACTCACCCAATCGATCAACTTTGAGCTCAATTATCTCGATTTCTGTGAAAGATATCGGAAATTTGTCAATTGAAAAATTATTTATCATAATATAAAAAACAATTTATCAGATAACACATTTTTGATATCTTGCATTGGAATCAAGAAAAATGTTGACAAGGCGGGTTTCTATAAGAATAATTATGGTATGAATCAAAAACTCTATTTTCTCAACATTTCTGAAAGGGGGACTCCGACCAACAATTGTTATTGCATGAAAATGCTCGAAAAGATCTATTTTTCTAATTCCAGAAAAACTCAGTTGAAAACAAAAAAATGGCAAATAGGGACGAGGATTTGAGTTCCCGCGCTTTGAGAAACCTATGCCACAGCATCAGGACGCTTTTTCTTGAATGTCGATTTTCCGGATATTTATGGTAGCCTAACTTTCACATGTTGAGTTTTCTAGACCACCATATTAAAATGGTCTAGAAAACACACCATGTAAATATCAGGTGATTACTAAAATATCAGGTCATTAAACCATGATGACCCAGAAAACTCAACTTGCAAAAGTTAGGCCACCTTGCTACAATGGCCTAGAAAATCCACAAGGGAAATACCAGGTCATCGTTAGGCTATAAAAGTTAATGGCCTAGAAAACTAGACTTGCAAAAGCTAGGCCCACAACGAGAAATGACCTCGAAAACACACCAGGTGCATGTTAGACAATTTCTGCACCATCAGTTAGGGTGGCCTAGAAAAATCGAAAAATCATTTTGAGACAGTTGGGCCACTCTATTCCTCAGCTGAAACCGGAGTGTGTGATTCTCGGCACCGATCGAAAAAATTCTTTTTTGAAAAAGTTCGAACGTAACAAAAATCACACAAAGACATTGGTGCAATAAAAATTCTCGGT</canonical>
            <polymorphic>ATAACTATTACCAATGTTCATCAACTCATATTTACGGCTACAATTTTTCAGGTGAGTATTAAAAGTTTGTCATATGGCATTAACTGTATTTCATCTTATAAAACTCACCCAATCGATCAACTTTGAGCTCAATTATCTCGATTTCTGTGAAAGATATCGGAAATTTGTCAATTGAAAAATTATTTATCATAATATAAAAAACAATTTATCAGATAACACATTTTTGATATCTTGCATTGGAATCAAGAAAAATGTTGACAAGGCGGGTTTCTATAAGAATAATTATGGTATGAATCAAAAACTCTATTTTCTCAACATTTCTGAAAGGGGGACTCCGACCAACAATTGTTATTGCATGAAAATGCTCGAAAAGATCTATTTTTCTAATTCCAGAAAAACTCAGTTGAAAACAAAAAAATGGCAAATAGGGACGAGGATTTGAGTTCCCGCGCTTTGAGAAACCTATGCCACAGCATCAGGACGCTTTTTCTTGAATGTCRATTTTCCGGATATTTATGGTAGCCTAACTTTCACATGTTGAGTTTTCTAGACCACCATATTAAAATGGTCTAGAAAACACACCATGTAAATATCAGGTGATTACTAAAATATCAGGTCATTAAACCATGATGACCCAGAAAACTCAACTTGCAAAAGTTAGGCCACCTTGCTACAATGGCCTAGAAAATCCACAAGGGAAATACCAGGTCATCGTTAGGCTATAAAAGTTAATGGCCTAGAAAACTAGACTTGCAAAAGCTAGGCCCACAACGAGAAATGACCTCGAAAACACACCAGGTGCATGTTAGACAATTTCTGCACCATCAGTTAGGGTGGCCTAGAAAAATCGAAAAATCATTTTGAGACAGTTGGGCCACTCTATTCCTCAGCTGAAACCGGAGTGTGTGATTCTCGGCACCGATCGAAAAAATTCTTTTTTGAAAAAGTTCGAACGTAACAAAAATCACACAAAGACATTGGTGCAATAAAAATTCTCGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>286 228 132 114 75 64 50 26 25</canonical_bands>
                <polymorphic_bands>418 228 114 75 64 50 26 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAGGGACGAGGATTTGAGT</pcr_primer_p1>
		<pcr_primer_p2>GGTTTCAGCTGAGGAATAGA</pcr_primer_p2>
		<pcr_amplicon_size>474</pcr_amplicon_size>
		<canonical_amplicon>ATAGGGACGAGGATTTGAGTTCCCGCGCTTTGAGAAACCTATGCCACAGCATCAGGACGCTTTTTCTTGAATGTCGATTTTCCGGATATTTATGGTAGCCTAACTTTCACATGTTGAGTTTTCTAGACCACCATATTAAAATGGTCTAGAAAACACACCATGTAAATATCAGGTGATTACTAAAATATCAGGTCATTAAACCATGATGACCCAGAAAACTCAACTTGCAAAAGTTAGGCCACCTTGCTACAATGGCCTAGAAAATCCACAAGGGAAATACCAGGTCATCGTTAGGCTATAAAAGTTAATGGCCTAGAAAACTAGACTTGCAAAAGCTAGGCCCACAACGAGAAATGACCTCGAAAACACACCAGGTGCATGTTAGACAATTTCTGCACCATCAGTTAGGGTGGCCTAGAAAAATCGAAAAATCATTTTGAGACAGTTGGGCCACTCTATTCCTCAGCTGAAACC</canonical_amplicon>
		<polymorphic_amplicon>ATAGGGACGAGGATTTGAGTTCCCGCGCTTTGAGAAACCTATGCCACAGCATCAGGACGCTTTTTCTTGAATGTCRATTTTCCGGATATTTATGGTAGCCTAACTTTCACATGTTGAGTTTTCTAGACCACCATATTAAAATGGTCTAGAAAACACACCATGTAAATATCAGGTGATTACTAAAATATCAGGTCATTAAACCATGATGACCCAGAAAACTCAACTTGCAAAAGTTAGGCCACCTTGCTACAATGGCCTAGAAAATCCACAAGGGAAATACCAGGTCATCGTTAGGCTATAAAAGTTAATGGCCTAGAAAACTAGACTTGCAAAAGCTAGGCCCACAACGAGAAATGACCTCGAAAACACACCAGGTGCATGTTAGACAATTTCTGCACCATCAGTTAGGGTGGCCTAGAAAAATCGAAAAATCATTTTGAGACAGTTGGGCCACTCTATTCCTCAGCTGAAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37133</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>85650</contig_pos>
        <strand></strand>
        <context>ctaactttca[C/T]atgttgagtt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTTTCTTGAATGTCGATTTTCCGGATATTTATGGTAGCCTAACTTTCA</left_flank>
        <right_flank>ATGTTGAGTTTTCTAGACCACCATATTAAAATGGTCTAGAAAACACACCA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGCTACAATTTTTCAGGTGAGTATTAAAAGTTTGTCATATGGCATTAACTGTATTTCATCTTATAAAACTCACCCAATCGATCAACTTTGAGCTCAATTATCTCGATTTCTGTGAAAGATATCGGAAATTTGTCAATTGAAAAATTATTTATCATAATATAAAAAACAATTTATCAGATAACACATTTTTGATATCTTGCATTGGAATCAAGAAAAATGTTGACAAGGCGGGTTTCTATAAGAATAATTATGGTATGAATCAAAAACTCTATTTTCTCAACATTTCTGAAAGGGGGACTCCGACCAACAATTGTTATTGCATGAAAATGCTCGAAAAGATCTATTTTTCTAATTCCAGAAAAACTCAGTTGAAAACAAAAAAATGGCAAATAGGGACGAGGATTTGAGTTCCCGCGCTTTGAGAAACCTATGCCACAGCATCAGGACGCTTTTTCTTGAATGTCGATTTTCCGGATATTTATGGTAGCCTAACTTTCACATGTTGAGTTTTCTAGACCACCATATTAAAATGGTCTAGAAAACACACCATGTAAATATCAGGTGATTACTAAAATATCAGGTCATTAAACCATGATGACCCAGAAAACTCAACTTGCAAAAGTTAGGCCACCTTGCTACAATGGCCTAGAAAATCCACAAGGGAAATACCAGGTCATCGTTAGGCTATAAAAGTTAATGGCCTAGAAAACTAGACTTGCAAAAGCTAGGCCCACAACGAGAAATGACCTCGAAAACACACCAGGTGCATGTTAGACAATTTCTGCACCATCAGTTAGGGTGGCCTAGAAAAATCGAAAAATCATTTTGAGACAGTTGGGCCACTCTATTCCTCAGCTGAAACCGGAGTGTGTGATTCTCGGCACCGATCGAAAAAATTCTTTTTTGAAAAAGTTCGAACGTAACAAAAATCACACAAAGACATTGGTGCAATAAAAATTCTCGGTTGGAGTCCTTCTTCAAAATTAAAAATTTTTCGAA</canonical>
            <polymorphic>CGGCTACAATTTTTCAGGTGAGTATTAAAAGTTTGTCATATGGCATTAACTGTATTTCATCTTATAAAACTCACCCAATCGATCAACTTTGAGCTCAATTATCTCGATTTCTGTGAAAGATATCGGAAATTTGTCAATTGAAAAATTATTTATCATAATATAAAAAACAATTTATCAGATAACACATTTTTGATATCTTGCATTGGAATCAAGAAAAATGTTGACAAGGCGGGTTTCTATAAGAATAATTATGGTATGAATCAAAAACTCTATTTTCTCAACATTTCTGAAAGGGGGACTCCGACCAACAATTGTTATTGCATGAAAATGCTCGAAAAGATCTATTTTTCTAATTCCAGAAAAACTCAGTTGAAAACAAAAAAATGGCAAATAGGGACGAGGATTTGAGTTCCCGCGCTTTGAGAAACCTATGCCACAGCATCAGGACGCTTTTTCTTGAATGTCGATTTTCCGGATATTTATGGTAGCCTAACTTTCAYATGTTGAGTTTTCTAGACCACCATATTAAAATGGTCTAGAAAACACACCATGTAAATATCAGGTGATTACTAAAATATCAGGTCATTAAACCATGATGACCCAGAAAACTCAACTTGCAAAAGTTAGGCCACCTTGCTACAATGGCCTAGAAAATCCACAAGGGAAATACCAGGTCATCGTTAGGCTATAAAAGTTAATGGCCTAGAAAACTAGACTTGCAAAAGCTAGGCCCACAACGAGAAATGACCTCGAAAACACACCAGGTGCATGTTAGACAATTTCTGCACCATCAGTTAGGGTGGCCTAGAAAAATCGAAAAATCATTTTGAGACAGTTGGGCCACTCTATTCCTCAGCTGAAACCGGAGTGTGTGATTCTCGGCACCGATCGAAAAAATTCTTTTTTGAAAAAGTTCGAACGTAACAAAAATCACACAAAGACATTGGTGCAATAAAAATTCTCGGTTGGAGTCCTTCTTCAAAATTAAAAATTTTTCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>503 268 229</canonical_bands>
                <polymorphic_bands>771 229</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>321 232 179 176 49 43</canonical_bands>
                <polymorphic_bands>321 232 228 176 43</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>252 76 69 66 63 53 51 49 42 41 27 27 25 24 21 20 20 18 15 14 10 7 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>252 84 76 69 66 53 51 49 42 41 27 27 25 24 20 20 18 15 14 10 7 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACGCTTTTTCTTGAATGTC</pcr_primer_p1>
		<pcr_primer_p2>GGTTTCAGCTGAGGAATAGA</pcr_primer_p2>
		<pcr_amplicon_size>419</pcr_amplicon_size>
		<canonical_amplicon>GACGCTTTTTCTTGAATGTCGATTTTCCGGATATTTATGGTAGCCTAACTTTCACATGTTGAGTTTTCTAGACCACCATATTAAAATGGTCTAGAAAACACACCATGTAAATATCAGGTGATTACTAAAATATCAGGTCATTAAACCATGATGACCCAGAAAACTCAACTTGCAAAAGTTAGGCCACCTTGCTACAATGGCCTAGAAAATCCACAAGGGAAATACCAGGTCATCGTTAGGCTATAAAAGTTAATGGCCTAGAAAACTAGACTTGCAAAAGCTAGGCCCACAACGAGAAATGACCTCGAAAACACACCAGGTGCATGTTAGACAATTTCTGCACCATCAGTTAGGGTGGCCTAGAAAAATCGAAAAATCATTTTGAGACAGTTGGGCCACTCTATTCCTCAGCTGAAACC</canonical_amplicon>
		<polymorphic_amplicon>GACGCTTTTTCTTGAATGTCGATTTTCCGGATATTTATGGTAGCCTAACTTTCAYATGTTGAGTTTTCTAGACCACCATATTAAAATGGTCTAGAAAACACACCATGTAAATATCAGGTGATTACTAAAATATCAGGTCATTAAACCATGATGACCCAGAAAACTCAACTTGCAAAAGTTAGGCCACCTTGCTACAATGGCCTAGAAAATCCACAAGGGAAATACCAGGTCATCGTTAGGCTATAAAAGTTAATGGCCTAGAAAACTAGACTTGCAAAAGCTAGGCCCACAACGAGAAATGACCTCGAAAACACACCAGGTGCATGTTAGACAATTTCTGCACCATCAGTTAGGGTGGCCTAGAAAAATCGAAAAATCATTTTGAGACAGTTGGGCCACTCTATTCCTCAGCTGAAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37134</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>85944</contig_pos>
        <strand></strand>
        <context>tgcaccatca[G/A]ttagggtggc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATGACCTCGAAAACACACCAGGTGCATGTTAGACAATTTCTGCACCATCA</left_flank>
        <right_flank>TTAGGGTGGCCTAGAAAAATCGAAAAATCATTTTGAGACAGTTGGGCCAC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGACTCCGACCAACAATTGTTATTGCATGAAAATGCTCGAAAAGATCTATTTTTCTAATTCCAGAAAAACTCAGTTGAAAACAAAAAAATGGCAAATAGGGACGAGGATTTGAGTTCCCGCGCTTTGAGAAACCTATGCCACAGCATCAGGACGCTTTTTCTTGAATGTCGATTTTCCGGATATTTATGGTAGCCTAACTTTCACATGTTGAGTTTTCTAGACCACCATATTAAAATGGTCTAGAAAACACACCATGTAAATATCAGGTGATTACTAAAATATCAGGTCATTAAACCATGATGACCCAGAAAACTCAACTTGCAAAAGTTAGGCCACCTTGCTACAATGGCCTAGAAAATCCACAAGGGAAATACCAGGTCATCGTTAGGCTATAAAAGTTAATGGCCTAGAAAACTAGACTTGCAAAAGCTAGGCCCACAACGAGAAATGACCTCGAAAACACACCAGGTGCATGTTAGACAATTTCTGCACCATCAGTTAGGGTGGCCTAGAAAAATCGAAAAATCATTTTGAGACAGTTGGGCCACTCTATTCCTCAGCTGAAACCGGAGTGTGTGATTCTCGGCACCGATCGAAAAAATTCTTTTTTGAAAAAGTTCGAACGTAACAAAAATCACACAAAGACATTGGTGCAATAAAAATTCTCGGTTGGAGTCCTTCTTCAAAATTAAAAATTTTTCGAACTTTTTCAAATTTAACTTAATTCTTAGATGGACGTCATTATTGGAGCCTGTCAGGAATATCTCACAACAAAGATCACTTCTAATAACTGCCTCGCCCTTCATAATTTTGCTGAAACTTACAATTGTACCACGCTGATCTCCTCCACTGATGATTTTGCCGCAGACCAATTTGAATGCATTCGTCGGAGTACTGGTTTCAAGTCAATGTCTTTTCTTCATTTGAAACGTCTTCTGAATCGATCAGATCTAAACATTCGCGAAGAAGAATGCGTTTTTGAGTCCATCACCCACTGG</canonical>
            <polymorphic>GGGACTCCGACCAACAATTGTTATTGCATGAAAATGCTCGAAAAGATCTATTTTTCTAATTCCAGAAAAACTCAGTTGAAAACAAAAAAATGGCAAATAGGGACGAGGATTTGAGTTCCCGCGCTTTGAGAAACCTATGCCACAGCATCAGGACGCTTTTTCTTGAATGTCGATTTTCCGGATATTTATGGTAGCCTAACTTTCACATGTTGAGTTTTCTAGACCACCATATTAAAATGGTCTAGAAAACACACCATGTAAATATCAGGTGATTACTAAAATATCAGGTCATTAAACCATGATGACCCAGAAAACTCAACTTGCAAAAGTTAGGCCACCTTGCTACAATGGCCTAGAAAATCCACAAGGGAAATACCAGGTCATCGTTAGGCTATAAAAGTTAATGGCCTAGAAAACTAGACTTGCAAAAGCTAGGCCCACAACGAGAAATGACCTCGAAAACACACCAGGTGCATGTTAGACAATTTCTGCACCATCARTTAGGGTGGCCTAGAAAAATCGAAAAATCATTTTGAGACAGTTGGGCCACTCTATTCCTCAGCTGAAACCGGAGTGTGTGATTCTCGGCACCGATCGAAAAAATTCTTTTTTGAAAAAGTTCGAACGTAACAAAAATCACACAAAGACATTGGTGCAATAAAAATTCTCGGTTGGAGTCCTTCTTCAAAATTAAAAATTTTTCGAACTTTTTCAAATTTAACTTAATTCTTAGATGGACGTCATTATTGGAGCCTGTCAGGAATATCTCACAACAAAGATCACTTCTAATAACTGCCTCGCCCTTCATAATTTTGCTGAAACTTACAATTGTACCACGCTGATCTCCTCCACTGATGATTTTGCCGCAGACCAATTTGAATGCATTCGTCGGAGTACTGGTTTCAAGTCAATGTCTTTTCTTCATTTGAAACGTCTTCTGAATCGATCAGATCTAAACATTCGCGAAGAAGAATGCGTTTTTGAGTCCATCACCCACTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACGCTTTTTCTTGAATGTC</pcr_primer_p1>
		<pcr_primer_p2>GGTTTCAGCTGAGGAATAGA</pcr_primer_p2>
		<pcr_amplicon_size>419</pcr_amplicon_size>
		<canonical_amplicon>GACGCTTTTTCTTGAATGTCGATTTTCCGGATATTTATGGTAGCCTAACTTTCACATGTTGAGTTTTCTAGACCACCATATTAAAATGGTCTAGAAAACACACCATGTAAATATCAGGTGATTACTAAAATATCAGGTCATTAAACCATGATGACCCAGAAAACTCAACTTGCAAAAGTTAGGCCACCTTGCTACAATGGCCTAGAAAATCCACAAGGGAAATACCAGGTCATCGTTAGGCTATAAAAGTTAATGGCCTAGAAAACTAGACTTGCAAAAGCTAGGCCCACAACGAGAAATGACCTCGAAAACACACCAGGTGCATGTTAGACAATTTCTGCACCATCAGTTAGGGTGGCCTAGAAAAATCGAAAAATCATTTTGAGACAGTTGGGCCACTCTATTCCTCAGCTGAAACC</canonical_amplicon>
		<polymorphic_amplicon>GACGCTTTTTCTTGAATGTCGATTTTCCGGATATTTATGGTAGCCTAACTTTCACATGTTGAGTTTTCTAGACCACCATATTAAAATGGTCTAGAAAACACACCATGTAAATATCAGGTGATTACTAAAATATCAGGTCATTAAACCATGATGACCCAGAAAACTCAACTTGCAAAAGTTAGGCCACCTTGCTACAATGGCCTAGAAAATCCACAAGGGAAATACCAGGTCATCGTTAGGCTATAAAAGTTAATGGCCTAGAAAACTAGACTTGCAAAAGCTAGGCCCACAACGAGAAATGACCTCGAAAACACACCAGGTGCATGTTAGACAATTTCTGCACCATCARTTAGGGTGGCCTAGAAAAATCGAAAAATCATTTTGAGACAGTTGGGCCACTCTATTCCTCAGCTGAAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37135</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>90040</contig_pos>
        <strand></strand>
        <context>gaatacacag[G/A]aatatgtaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AACACAAAGTTATCGAAAAGTAATAACAATTGGGTAAAAAGAATACACAG</left_flank>
        <right_flank>AATATGTAAAGCTCATTTGGGTGATAGATTTGGTGGTGTTCCACTCAAAA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCGTGCCGTCGCTGACATTCAAGAGTGCCGAGCTGGTGCTGGTGTGGCTTGGGCCAATGTCCGTGTACACCAATTAGGACGATCGCCCAGCCATTGTGATTCTGGGTGTGCACCGTCTGGAGGAGCTTACTGTGTTTGAGAACTTGCCGGAATCGACTTAATTAACAATACAGGGTTTGCCATTCAGTTCCGAATATGATTTTTTTGCCCAAATACTGGTTTATCTGGTTATTTTTGACTGTATAAAATCGTTTCAATACCAAGAGTGTTCTATGCGAAACCAAAAACAAATGAATTCCAGTTATTATGCTGATATGCAAAAATCGGTACTCTGGCCGAACTACCGTGTTTAGCAAATGTTTTTTTACACTTATACATTTTTGTCCGTTTTCCAGCAAATTTTAGGATTTACAAAAGTTTTATTTTCCGACTTGTTTAGAGGTTTTCAACACAAAGTTATCGAAAAGTAATAACAATTGGGTAAAAAGAATACACAGGAATATGTAAAGCTCATTTGGGTGATAGATTTGGTGGTGTTCCACTCAAAAAAGAGCAAGACGGAGCAATTCCGAGAGTCGAAAGTTTTGCTTTTGGGCAATAGGACAAGTCGAAAAAACACTATTTCAACATTTCTTCAAAATTTCAAACACCTTCTTTTTCACTTTGAAAACGTCGGGAATTCATGAAATAAGTATAATTTGTTATTCAGGGGACCAAAATGGATATCGAAAATTCGTCTTGAAAAAACCAAAAAAAAAGATTTACCACAGTGGGGTTCGAACCACCCACAGGTGATTCGTGACTGACCAATTACAGATGAAGAGCTATAAACAACCCAATTACTCACCTGCCACGAACTAGTGGTTCTACAAATGACCATTCGCGAGCAAAATGTGTATCTTACTAACTGGCCCCATAAAAGGTTCACAATTGAACAATCGCAAAAAAATTCTTGTTTTTTCTTTTTTCGAAGTTCTTTCACCTATATTGGGTATTTT</canonical>
            <polymorphic>TGGCGTGCCGTCGCTGACATTCAAGAGTGCCGAGCTGGTGCTGGTGTGGCTTGGGCCAATGTCCGTGTACACCAATTAGGACGATCGCCCAGCCATTGTGATTCTGGGTGTGCACCGTCTGGAGGAGCTTACTGTGTTTGAGAACTTGCCGGAATCGACTTAATTAACAATACAGGGTTTGCCATTCAGTTCCGAATATGATTTTTTTGCCCAAATACTGGTTTATCTGGTTATTTTTGACTGTATAAAATCGTTTCAATACCAAGAGTGTTCTATGCGAAACCAAAAACAAATGAATTCCAGTTATTATGCTGATATGCAAAAATCGGTACTCTGGCCGAACTACCGTGTTTAGCAAATGTTTTTTTACACTTATACATTTTTGTCCGTTTTCCAGCAAATTTTAGGATTTACAAAAGTTTTATTTTCCGACTTGTTTAGAGGTTTTCAACACAAAGTTATCGAAAAGTAATAACAATTGGGTAAAAAGAATACACAGRAATATGTAAAGCTCATTTGGGTGATAGATTTGGTGGTGTTCCACTCAAAAAAGAGCAAGACGGAGCAATTCCGAGAGTCGAAAGTTTTGCTTTTGGGCAATAGGACAAGTCGAAAAAACACTATTTCAACATTTCTTCAAAATTTCAAACACCTTCTTTTTCACTTTGAAAACGTCGGGAATTCATGAAATAAGTATAATTTGTTATTCAGGGGACCAAAATGGATATCGAAAATTCGTCTTGAAAAAACCAAAAAAAAAGATTTACCACAGTGGGGTTCGAACCACCCACAGGTGATTCGTGACTGACCAATTACAGATGAAGAGCTATAAACAACCCAATTACTCACCTGCCACGAACTAGTGGTTCTACAAATGACCATTCGCGAGCAAAATGTGTATCTTACTAACTGGCCCCATAAAAGGTTCACAATTGAACAATCGCAAAAAAATTCTTGTTTTTTCTTTTTTCGAAGTTCTTTCACCTATATTGGGTATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAAACCAAAAACAAATGAA</pcr_primer_p1>
		<pcr_primer_p2>GTCAGTCACGAATCACCTGT</pcr_primer_p2>
		<pcr_amplicon_size>532</pcr_amplicon_size>
		<canonical_amplicon>CGAAACCAAAAACAAATGAATTCCAGTTATTATGCTGATATGCAAAAATCGGTACTCTGGCCGAACTACCGTGTTTAGCAAATGTTTTTTTACACTTATACATTTTTGTCCGTTTTCCAGCAAATTTTAGGATTTACAAAAGTTTTATTTTCCGACTTGTTTAGAGGTTTTCAACACAAAGTTATCGAAAAGTAATAACAATTGGGTAAAAAGAATACACAGGAATATGTAAAGCTCATTTGGGTGATAGATTTGGTGGTGTTCCACTCAAAAAAGAGCAAGACGGAGCAATTCCGAGAGTCGAAAGTTTTGCTTTTGGGCAATAGGACAAGTCGAAAAAACACTATTTCAACATTTCTTCAAAATTTCAAACACCTTCTTTTTCACTTTGAAAACGTCGGGAATTCATGAAATAAGTATAATTTGTTATTCAGGGGACCAAAATGGATATCGAAAATTCGTCTTGAAAAAACCAAAAAAAAAGATTTACCACAGTGGGGTTCGAACCACCCACAGGTGATTCGTGACTGAC</canonical_amplicon>
		<polymorphic_amplicon>CGAAACCAAAAACAAATGAATTCCAGTTATTATGCTGATATGCAAAAATCGGTACTCTGGCCGAACTACCGTGTTTAGCAAATGTTTTTTTACACTTATACATTTTTGTCCGTTTTCCAGCAAATTTTAGGATTTACAAAAGTTTTATTTTCCGACTTGTTTAGAGGTTTTCAACACAAAGTTATCGAAAAGTAATAACAATTGGGTAAAAAGAATACACAGRAATATGTAAAGCTCATTTGGGTGATAGATTTGGTGGTGTTCCACTCAAAAAAGAGCAAGACGGAGCAATTCCGAGAGTCGAAAGTTTTGCTTTTGGGCAATAGGACAAGTCGAAAAAACACTATTTCAACATTTCTTCAAAATTTCAAACACCTTCTTTTTCACTTTGAAAACGTCGGGAATTCATGAAATAAGTATAATTTGTTATTCAGGGGACCAAAATGGATATCGAAAATTCGTCTTGAAAAAACCAAAAAAAAAGATTTACCACAGTGGGGTTCGAACCACCCACAGGTGATTCGTGACTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37136</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>90139</contig_pos>
        <strand></strand>
        <context>gcttttgggc[A/G]ataggacaag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAGAGCAAGACGGAGCAATTCCGAGAGTCGAAAGTTTTGCTTTTGGGC</left_flank>
        <right_flank>ATAGGACAAGTCGAAAAAACACTATTTCAACATTTCTTCAAAATTTCAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTCTGGGTGTGCACCGTCTGGAGGAGCTTACTGTGTTTGAGAACTTGCCGGAATCGACTTAATTAACAATACAGGGTTTGCCATTCAGTTCCGAATATGATTTTTTTGCCCAAATACTGGTTTATCTGGTTATTTTTGACTGTATAAAATCGTTTCAATACCAAGAGTGTTCTATGCGAAACCAAAAACAAATGAATTCCAGTTATTATGCTGATATGCAAAAATCGGTACTCTGGCCGAACTACCGTGTTTAGCAAATGTTTTTTTACACTTATACATTTTTGTCCGTTTTCCAGCAAATTTTAGGATTTACAAAAGTTTTATTTTCCGACTTGTTTAGAGGTTTTCAACACAAAGTTATCGAAAAGTAATAACAATTGGGTAAAAAGAATACACAGGAATATGTAAAGCTCATTTGGGTGATAGATTTGGTGGTGTTCCACTCAAAAAAGAGCAAGACGGAGCAATTCCGAGAGTCGAAAGTTTTGCTTTTGGGCAATAGGACAAGTCGAAAAAACACTATTTCAACATTTCTTCAAAATTTCAAACACCTTCTTTTTCACTTTGAAAACGTCGGGAATTCATGAAATAAGTATAATTTGTTATTCAGGGGACCAAAATGGATATCGAAAATTCGTCTTGAAAAAACCAAAAAAAAAGATTTACCACAGTGGGGTTCGAACCACCCACAGGTGATTCGTGACTGACCAATTACAGATGAAGAGCTATAAACAACCCAATTACTCACCTGCCACGAACTAGTGGTTCTACAAATGACCATTCGCGAGCAAAATGTGTATCTTACTAACTGGCCCCATAAAAGGTTCACAATTGAACAATCGCAAAAAAATTCTTGTTTTTTCTTTTTTCGAAGTTCTTTCACCTATATTGGGTATTTTTCATCGTTTTTTGCATTTCGTTGCAATTTTTGTCCGTAAATTATTATTTAACCTACAAGAACATACTGGAATACTGTACCAGCAAGTATTTCGCTTGTT</canonical>
            <polymorphic>GATTCTGGGTGTGCACCGTCTGGAGGAGCTTACTGTGTTTGAGAACTTGCCGGAATCGACTTAATTAACAATACAGGGTTTGCCATTCAGTTCCGAATATGATTTTTTTGCCCAAATACTGGTTTATCTGGTTATTTTTGACTGTATAAAATCGTTTCAATACCAAGAGTGTTCTATGCGAAACCAAAAACAAATGAATTCCAGTTATTATGCTGATATGCAAAAATCGGTACTCTGGCCGAACTACCGTGTTTAGCAAATGTTTTTTTACACTTATACATTTTTGTCCGTTTTCCAGCAAATTTTAGGATTTACAAAAGTTTTATTTTCCGACTTGTTTAGAGGTTTTCAACACAAAGTTATCGAAAAGTAATAACAATTGGGTAAAAAGAATACACAGGAATATGTAAAGCTCATTTGGGTGATAGATTTGGTGGTGTTCCACTCAAAAAAGAGCAAGACGGAGCAATTCCGAGAGTCGAAAGTTTTGCTTTTGGGCRATAGGACAAGTCGAAAAAACACTATTTCAACATTTCTTCAAAATTTCAAACACCTTCTTTTTCACTTTGAAAACGTCGGGAATTCATGAAATAAGTATAATTTGTTATTCAGGGGACCAAAATGGATATCGAAAATTCGTCTTGAAAAAACCAAAAAAAAAGATTTACCACAGTGGGGTTCGAACCACCCACAGGTGATTCGTGACTGACCAATTACAGATGAAGAGCTATAAACAACCCAATTACTCACCTGCCACGAACTAGTGGTTCTACAAATGACCATTCGCGAGCAAAATGTGTATCTTACTAACTGGCCCCATAAAAGGTTCACAATTGAACAATCGCAAAAAAATTCTTGTTTTTTCTTTTTTCGAAGTTCTTTCACCTATATTGGGTATTTTTCATCGTTTTTTGCATTTCGTTGCAATTTTTGTCCGTAAATTATTATTTAACCTACAAGAACATACTGGAATACTGTACCAGCAAGTATTTCGCTTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAAACCAAAAACAAATGAA</pcr_primer_p1>
		<pcr_primer_p2>GTCAGTCACGAATCACCTGT</pcr_primer_p2>
		<pcr_amplicon_size>532</pcr_amplicon_size>
		<canonical_amplicon>CGAAACCAAAAACAAATGAATTCCAGTTATTATGCTGATATGCAAAAATCGGTACTCTGGCCGAACTACCGTGTTTAGCAAATGTTTTTTTACACTTATACATTTTTGTCCGTTTTCCAGCAAATTTTAGGATTTACAAAAGTTTTATTTTCCGACTTGTTTAGAGGTTTTCAACACAAAGTTATCGAAAAGTAATAACAATTGGGTAAAAAGAATACACAGGAATATGTAAAGCTCATTTGGGTGATAGATTTGGTGGTGTTCCACTCAAAAAAGAGCAAGACGGAGCAATTCCGAGAGTCGAAAGTTTTGCTTTTGGGCAATAGGACAAGTCGAAAAAACACTATTTCAACATTTCTTCAAAATTTCAAACACCTTCTTTTTCACTTTGAAAACGTCGGGAATTCATGAAATAAGTATAATTTGTTATTCAGGGGACCAAAATGGATATCGAAAATTCGTCTTGAAAAAACCAAAAAAAAAGATTTACCACAGTGGGGTTCGAACCACCCACAGGTGATTCGTGACTGAC</canonical_amplicon>
		<polymorphic_amplicon>CGAAACCAAAAACAAATGAATTCCAGTTATTATGCTGATATGCAAAAATCGGTACTCTGGCCGAACTACCGTGTTTAGCAAATGTTTTTTTACACTTATACATTTTTGTCCGTTTTCCAGCAAATTTTAGGATTTACAAAAGTTTTATTTTCCGACTTGTTTAGAGGTTTTCAACACAAAGTTATCGAAAAGTAATAACAATTGGGTAAAAAGAATACACAGGAATATGTAAAGCTCATTTGGGTGATAGATTTGGTGGTGTTCCACTCAAAAAAGAGCAAGACGGAGCAATTCCGAGAGTCGAAAGTTTTGCTTTTGGGCRATAGGACAAGTCGAAAAAACACTATTTCAACATTTCTTCAAAATTTCAAACACCTTCTTTTTCACTTTGAAAACGTCGGGAATTCATGAAATAAGTATAATTTGTTATTCAGGGGACCAAAATGGATATCGAAAATTCGTCTTGAAAAAACCAAAAAAAAAGATTTACCACAGTGGGGTTCGAACCACCCACAGGTGATTCGTGACTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37137</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>90231</contig_pos>
        <strand></strand>
        <context>attcatgaaa[T/A]aagtataatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATTTCAAACACCTTCTTTTTCACTTTGAAAACGTCGGGAATTCATGAAA</left_flank>
        <right_flank>AAGTATAATTTGTTATTCAGGGGACCAAAATGGATATCGAAAATTCGTCT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGAATATGATTTTTTTGCCCAAATACTGGTTTATCTGGTTATTTTTGACTGTATAAAATCGTTTCAATACCAAGAGTGTTCTATGCGAAACCAAAAACAAATGAATTCCAGTTATTATGCTGATATGCAAAAATCGGTACTCTGGCCGAACTACCGTGTTTAGCAAATGTTTTTTTACACTTATACATTTTTGTCCGTTTTCCAGCAAATTTTAGGATTTACAAAAGTTTTATTTTCCGACTTGTTTAGAGGTTTTCAACACAAAGTTATCGAAAAGTAATAACAATTGGGTAAAAAGAATACACAGGAATATGTAAAGCTCATTTGGGTGATAGATTTGGTGGTGTTCCACTCAAAAAAGAGCAAGACGGAGCAATTCCGAGAGTCGAAAGTTTTGCTTTTGGGCAATAGGACAAGTCGAAAAAACACTATTTCAACATTTCTTCAAAATTTCAAACACCTTCTTTTTCACTTTGAAAACGTCGGGAATTCATGAAATAAGTATAATTTGTTATTCAGGGGACCAAAATGGATATCGAAAATTCGTCTTGAAAAAACCAAAAAAAAAGATTTACCACAGTGGGGTTCGAACCACCCACAGGTGATTCGTGACTGACCAATTACAGATGAAGAGCTATAAACAACCCAATTACTCACCTGCCACGAACTAGTGGTTCTACAAATGACCATTCGCGAGCAAAATGTGTATCTTACTAACTGGCCCCATAAAAGGTTCACAATTGAACAATCGCAAAAAAATTCTTGTTTTTTCTTTTTTCGAAGTTCTTTCACCTATATTGGGTATTTTTCATCGTTTTTTGCATTTCGTTGCAATTTTTGTCCGTAAATTATTATTTAACCTACAAGAACATACTGGAATACTGTACCAGCAAGTATTTCGCTTGTTATTTGCAGAAAAATTGGAAAAATGGCCGGGAGACAAATGTCGGAAGCTAGAAATAGAAGTTTTGGTCTATTCTGGAGGTAGCATTGCTACTG</canonical>
            <polymorphic>CCGAATATGATTTTTTTGCCCAAATACTGGTTTATCTGGTTATTTTTGACTGTATAAAATCGTTTCAATACCAAGAGTGTTCTATGCGAAACCAAAAACAAATGAATTCCAGTTATTATGCTGATATGCAAAAATCGGTACTCTGGCCGAACTACCGTGTTTAGCAAATGTTTTTTTACACTTATACATTTTTGTCCGTTTTCCAGCAAATTTTAGGATTTACAAAAGTTTTATTTTCCGACTTGTTTAGAGGTTTTCAACACAAAGTTATCGAAAAGTAATAACAATTGGGTAAAAAGAATACACAGGAATATGTAAAGCTCATTTGGGTGATAGATTTGGTGGTGTTCCACTCAAAAAAGAGCAAGACGGAGCAATTCCGAGAGTCGAAAGTTTTGCTTTTGGGCAATAGGACAAGTCGAAAAAACACTATTTCAACATTTCTTCAAAATTTCAAACACCTTCTTTTTCACTTTGAAAACGTCGGGAATTCATGAAAWAAGTATAATTTGTTATTCAGGGGACCAAAATGGATATCGAAAATTCGTCTTGAAAAAACCAAAAAAAAAGATTTACCACAGTGGGGTTCGAACCACCCACAGGTGATTCGTGACTGACCAATTACAGATGAAGAGCTATAAACAACCCAATTACTCACCTGCCACGAACTAGTGGTTCTACAAATGACCATTCGCGAGCAAAATGTGTATCTTACTAACTGGCCCCATAAAAGGTTCACAATTGAACAATCGCAAAAAAATTCTTGTTTTTTCTTTTTTCGAAGTTCTTTCACCTATATTGGGTATTTTTCATCGTTTTTTGCATTTCGTTGCAATTTTTGTCCGTAAATTATTATTTAACCTACAAGAACATACTGGAATACTGTACCAGCAAGTATTTCGCTTGTTATTTGCAGAAAAATTGGAAAAATGGCCGGGAGACAAATGTCGGAAGCTAGAAATAGAAGTTTTGGTCTATTCTGGAGGTAGCATTGCTACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAAACCAAAAACAAATGAA</pcr_primer_p1>
		<pcr_primer_p2>GTCAGTCACGAATCACCTGT</pcr_primer_p2>
		<pcr_amplicon_size>532</pcr_amplicon_size>
		<canonical_amplicon>CGAAACCAAAAACAAATGAATTCCAGTTATTATGCTGATATGCAAAAATCGGTACTCTGGCCGAACTACCGTGTTTAGCAAATGTTTTTTTACACTTATACATTTTTGTCCGTTTTCCAGCAAATTTTAGGATTTACAAAAGTTTTATTTTCCGACTTGTTTAGAGGTTTTCAACACAAAGTTATCGAAAAGTAATAACAATTGGGTAAAAAGAATACACAGGAATATGTAAAGCTCATTTGGGTGATAGATTTGGTGGTGTTCCACTCAAAAAAGAGCAAGACGGAGCAATTCCGAGAGTCGAAAGTTTTGCTTTTGGGCAATAGGACAAGTCGAAAAAACACTATTTCAACATTTCTTCAAAATTTCAAACACCTTCTTTTTCACTTTGAAAACGTCGGGAATTCATGAAATAAGTATAATTTGTTATTCAGGGGACCAAAATGGATATCGAAAATTCGTCTTGAAAAAACCAAAAAAAAAGATTTACCACAGTGGGGTTCGAACCACCCACAGGTGATTCGTGACTGAC</canonical_amplicon>
		<polymorphic_amplicon>CGAAACCAAAAACAAATGAATTCCAGTTATTATGCTGATATGCAAAAATCGGTACTCTGGCCGAACTACCGTGTTTAGCAAATGTTTTTTTACACTTATACATTTTTGTCCGTTTTCCAGCAAATTTTAGGATTTACAAAAGTTTTATTTTCCGACTTGTTTAGAGGTTTTCAACACAAAGTTATCGAAAAGTAATAACAATTGGGTAAAAAGAATACACAGGAATATGTAAAGCTCATTTGGGTGATAGATTTGGTGGTGTTCCACTCAAAAAAGAGCAAGACGGAGCAATTCCGAGAGTCGAAAGTTTTGCTTTTGGGCAATAGGACAAGTCGAAAAAACACTATTTCAACATTTCTTCAAAATTTCAAACACCTTCTTTTTCACTTTGAAAACGTCGGGAATTCATGAAAWAAGTATAATTTGTTATTCAGGGGACCAAAATGGATATCGAAAATTCGTCTTGAAAAAACCAAAAAAAAAGATTTACCACAGTGGGGTTCGAACCACCCACAGGTGATTCGTGACTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37138</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>103950</contig_pos>
        <strand></strand>
        <context>gaaagaacag[T/C]gatcagccac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTATCTTGCCTATGTACAAGGTTATAGGCCAAGAGACGGAAAGAACAG</left_flank>
        <right_flank>GATCAGCCACTGTATGTCTCATAACGTTGTTCATAGACAAGATACAGTTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCATTCCAGCACAATAGATCAAGCGAGGATAGCTACAGTATACCGCGCCATGAAAAGCGAGATATCCTGTTATAATGGAATTGACCCATAATGCAAGCATATCAACGATTCCAAGAAATATCATTATTTTGAAACAGGACATTTTGAAATGGTCCTTTTCAAACATTACAGTTAGAATTGGAATATACATGATCTAAAAGAATTCAATAATTTGGTGTTAAAAACCAAGAATACCAACGTTCACAAAAATACCGTAAGCCATATCCAAACATCCGACTGTGGGGCGAGGAACCCCATCCTTTTGAGACCATTCTTCGGGGGTATGGCACTAAACAAGTTCCATAACAGTCATACCTGCCATAGTTTCTTTTAGAATCAATATTTTTAGACTAATTTTTTAGGTATGATTAAAATCGACAAGTACTACAAAATAATACAATTTGGAAAATTTTATCTTGCCTATGTACAAGGTTATAGGCCAAGAGACGGAAAGAACAGTGATCAGCCACTGTATGTCTCATAACGTTGTTCATAGACAAGATACAGTTTCCCGAATAGTATTATTTTTGTTGAGTTCTATCTTGCCTAATTTCTTTGGTCTAAGCTTTTTGATTCTAAAAGTAACTATGGCAGGACCCGCGAAGGCCCACCAAGGACCGGTTTACAAGTTAGATACCAACGGGCAAGAATAAACATCGTACCTGCAATTGTACAATGGAATTTCAGAAATAGAGCCATATTTCAGAATATTGTTCATGACTTGGAAAAGTTTGATGATCGAGTGATTACTAAATCCAAAAAAGTTTTGTTTTTATAGTTTACCACCCGCTTTAATCCTTTAAGGATTACTACGTAGCACTATTCAACTATTCAATTCATCTTATCAAAAAATAATAGTAAAAGTTATTGTAAGACAAACGCATTCATGGCGCTTAATCTCGATCAAAGAGTAGAGAAAATTCTTGATTTGTAACTCTTTGATTTCTTGAATAGTCACGT</canonical>
            <polymorphic>GCCATTCCAGCACAATAGATCAAGCGAGGATAGCTACAGTATACCGCGCCATGAAAAGCGAGATATCCTGTTATAATGGAATTGACCCATAATGCAAGCATATCAACGATTCCAAGAAATATCATTATTTTGAAACAGGACATTTTGAAATGGTCCTTTTCAAACATTACAGTTAGAATTGGAATATACATGATCTAAAAGAATTCAATAATTTGGTGTTAAAAACCAAGAATACCAACGTTCACAAAAATACCGTAAGCCATATCCAAACATCCGACTGTGGGGCGAGGAACCCCATCCTTTTGAGACCATTCTTCGGGGGTATGGCACTAAACAAGTTCCATAACAGTCATACCTGCCATAGTTTCTTTTAGAATCAATATTTTTAGACTAATTTTTTAGGTATGATTAAAATCGACAAGTACTACAAAATAATACAATTTGGAAAATTTTATCTTGCCTATGTACAAGGTTATAGGCCAAGAGACGGAAAGAACAGYGATCAGCCACTGTATGTCTCATAACGTTGTTCATAGACAAGATACAGTTTCCCGAATAGTATTATTTTTGTTGAGTTCTATCTTGCCTAATTTCTTTGGTCTAAGCTTTTTGATTCTAAAAGTAACTATGGCAGGACCCGCGAAGGCCCACCAAGGACCGGTTTACAAGTTAGATACCAACGGGCAAGAATAAACATCGTACCTGCAATTGTACAATGGAATTTCAGAAATAGAGCCATATTTCAGAATATTGTTCATGACTTGGAAAAGTTTGATGATCGAGTGATTACTAAATCCAAAAAAGTTTTGTTTTTATAGTTTACCACCCGCTTTAATCCTTTAAGGATTACTACGTAGCACTATTCAACTATTCAATTCATCTTATCAAAAAATAATAGTAAAAGTTATTGTAAGACAAACGCATTCATGGCGCTTAATCTCGATCAAAGAGTAGAGAAAATTCTTGATTTGTAACTCTTTGATTTCTTGAATAGTCACGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>454 150 133 83 69 38 35 25 13</canonical_bands>
                <polymorphic_bands>454 163 133 83 69 38 35 25</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>206 172 141 138 135 47 40 38 34 26 12 8 3</canonical_bands>
                <polymorphic_bands>206 180 141 138 135 47 40 38 34 26 12 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGTTCCATAACAGTCATACCT</pcr_primer_p1>
		<pcr_primer_p2>TATCTAACTTGTAAACCGGTCCT</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>CAAGTTCCATAACAGTCATACCTGCCATAGTTTCTTTTAGAATCAATATTTTTAGACTAATTTTTTAGGTATGATTAAAATCGACAAGTACTACAAAATAATACAATTTGGAAAATTTTATCTTGCCTATGTACAAGGTTATAGGCCAAGAGACGGAAAGAACAGTGATCAGCCACTGTATGTCTCATAACGTTGTTCATAGACAAGATACAGTTTCCCGAATAGTATTATTTTTGTTGAGTTCTATCTTGCCTAATTTCTTTGGTCTAAGCTTTTTGATTCTAAAAGTAACTATGGCAGGACCCGCGAAGGCCCACCAAGGACCGGTTTACAAGTTAGATA</canonical_amplicon>
		<polymorphic_amplicon>CAAGTTCCATAACAGTCATACCTGCCATAGTTTCTTTTAGAATCAATATTTTTAGACTAATTTTTTAGGTATGATTAAAATCGACAAGTACTACAAAATAATACAATTTGGAAAATTTTATCTTGCCTATGTACAAGGTTATAGGCCAAGAGACGGAAAGAACAGYGATCAGCCACTGTATGTCTCATAACGTTGTTCATAGACAAGATACAGTTTCCCGAATAGTATTATTTTTGTTGAGTTCTATCTTGCCTAATTTCTTTGGTCTAAGCTTTTTGATTCTAAAAGTAACTATGGCAGGACCCGCGAAGGCCCACCAAGGACCGGTTTACAAGTTAGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37139</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>105902</contig_pos>
        <strand>+</strand>
        <context>GTCAAGTCCA[A/G]AAGCCGATTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGATTTCCTTCAAAAAGCAAGCTTCCCAGATCTGGTTTGGTCAAGTCCA</left_flank>
        <right_flank>AAGCCGATTCAACACAAGACTCATTGCAATGACACAAGAGCAACACCAGA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACTGCCACATGCTATGCCCAACGATGATCAGCCAGAACGGAACATCGATAAAGTTCATGATGACGTAGATTATGGAGGCGATTTGATTGATTGCACAGATTAAAGCCGATTGAAGGAAGATTTGAGTACTCATTTTGTTAGATTTGGAAGAGGTTCCGTCGGAGGCTTGTTTGAACTTCTGCCCAAGAACGAAGCAGAAGGAGACATACAGGAGACAAGTGACACTGACGACGAGAATGTTGTTGAAGCCATGAGGAATATTGGCGTACTGAAATCACTGAAAACATACAACACTCTTTACAATTTCAAATTTACCTCTTCAGTTCGATTCACAAAAATGAGAGGATCAAAAAACCAAGTGTGATACTTGGATGAGAATGCGATGGGTGGTGTGAAGACGACAAAATACATTCCATAAATTAATGAAAAGCTCAACATGAAATAAGTACGATTTCCTTCAAAAAGCAAGCTTCCCAGATCTGGTTTGGTCAAGTCCAGAAGCCGATTCAACACAAGACTCATTGCAATGACACAAGAGCAACACCAGAGACCCAAACCTGCCATTCCGGCAATATAAATTAGGTTTGGGTATGTGCAGTAAACTGCACCCTGGAATGCCAAGAATCCGGTGATGATCGAGTTGACCCAGAGTGCCATCATGTCAACAGTTGCCAGGAAGATCATGATCTTGTAACAGGACATTCTGATGTTGTCTTTTTCAAAAAGGACAGAAAGGATTGGGACGTAGAGGATCTAAAAGGTTTATTGATTTCATGAAGTGAGTCTTTGAGCTCACATTGAATACGATCCCATAAACCATATCGAGGATTCCATAAAGAGGACGACGTACGCCATCACGCTCGGACCATTCTTCGAAAGTATGCGCGCTGTAAATGTTTTAGAATCAGAAATGTTAGAACTCGAGTAGTACTGTAAAATGATACAATTTGTAAAATTGTGTCTTGTCTATGAACAAAGTTACAAACAAAACGAGCAGT</canonical>
            <polymorphic>GAACTGCCACATGCTATGCCCAACGATGATCAGCCAGAACGGAACATCGATAAAGTTCATGATGACGTAGATTATGGAGGCGATTTGATTGATTGCACAGATTAAAGCCGATTGAAGGAAGATTTGAGTACTCATTTTGTTAGATTTGGAAGAGGTTCCGTCGGAGGCTTGTTTGAACTTCTGCCCAAGAACGAAGCAGAAGGAGACATACAGGAGACAAGTGACACTGACGACGAGAATGTTGTTGAAGCCATGAGGAATATTGGCGTACTGAAATCACTGAAAACATACAACACTCTTTACAATTTCAAATTTACCTCTTCAGTTCGATTCACAAAAATGAGAGGATCAAAAAACCAAGTGTGATACTTGGATGAGAATGCGATGGGTGGTGTGAAGACGACAAAATACATTCCATAAATTAATGAAAAGCTCAACATGAAATAAGTACGATTTCCTTCAAAAAGCAAGCTTCCCAGATCTGGTTTGGTCAAGTCCARAAGCCGATTCAACACAAGACTCATTGCAATGACACAAGAGCAACACCAGAGACCCAAACCTGCCATTCCGGCAATATAAATTAGGTTTGGGTATGTGCAGTAAACTGCACCCTGGAATGCCAAGAATCCGGTGATGATCGAGTTGACCCAGAGTGCCATCATGTCAACAGTTGCCAGGAAGATCATGATCTTGTAACAGGACATTCTGATGTTGTCTTTTTCAAAAAGGACAGAAAGGATTGGGACGTAGAGGATCTAAAAGGTTTATTGATTTCATGAAGTGAGTCTTTGAGCTCACATTGAATACGATCCCATAAACCATATCGAGGATTCCATAAAGAGGACGACGTACGCCATCACGCTCGGACCATTCTTCGAAAGTATGCGCGCTGTAAATGTTTTAGAATCAGAAATGTTAGAACTCGAGTAGTACTGTAAAATGATACAATTTGTAAAATTGTGTCTTGTCTATGAACAAAGTTACAAACAAAACGAGCAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>439 225 187 91 58</canonical_bands>
                <polymorphic_bands>626 225 91 58</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTGTGATACTTGGATGAGAATG</pcr_primer_p1>
		<pcr_primer_p2>AGTTTACTGCACATACCCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGTGTGATACTTGGATGAGAATGCGATGGGTGGTGTGAAGACGACAAAATACATTCCATAAATTAATGAAAAGCTCAACATGAAATAAGTACGATTTCCTTCAAAAAGCAAGCTTCCCAGATCTGGTTTGGTCAAGTCCAGAAGCCGATTCAACACAAGACTCATTGCAATGACACAAGAGCAACACCAGAGACCCAAACCTGCCATTCCGGCAATATAAATTAGGTTTGGGTATGTGCAGTAAACT</canonical_amplicon>
		<polymorphic_amplicon>AGTGTGATACTTGGATGAGAATGCGATGGGTGGTGTGAAGACGACAAAATACATTCCATAAATTAATGAAAAGCTCAACATGAAATAAGTACGATTTCCTTCAAAAAGCAAGCTTCCCAGATCTGGTTTGGTCAAGTCCARAAGCCGATTCAACACAAGACTCATTGCAATGACACAAGAGCAACACCAGAGACCCAAACCTGCCATTCCGGCAATATAAATTAGGTTTGGGTATGTGCAGTAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37140</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>106416</contig_pos>
        <strand></strand>
        <context>ggccaatacc[C/A]cggatcagcc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CTTGTCTATGAACAAAGTTACAAACAAAACGAGCAGTACCGGCCAATACC</left_flank>
        <right_flank>CGGATCAGCCATTTTATGGCTTATAACTTTGTTCACAAACAAGATACAGT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAGACTCATTGCAATGACACAAGAGCAACACCAGAGACCCAAACCTGCCATTCCGGCAATATAAATTAGGTTTGGGTATGTGCAGTAAACTGCACCCTGGAATGCCAAGAATCCGGTGATGATCGAGTTGACCCAGAGTGCCATCATGTCAACAGTTGCCAGGAAGATCATGATCTTGTAACAGGACATTCTGATGTTGTCTTTTTCAAAAAGGACAGAAAGGATTGGGACGTAGAGGATCTAAAAGGTTTATTGATTTCATGAAGTGAGTCTTTGAGCTCACATTGAATACGATCCCATAAACCATATCGAGGATTCCATAAAGAGGACGACGTACGCCATCACGCTCGGACCATTCTTCGAAAGTATGCGCGCTGTAAATGTTTTAGAATCAGAAATGTTAGAACTCGAGTAGTACTGTAAAATGATACAATTTGTAAAATTGTGTCTTGTCTATGAACAAAGTTACAAACAAAACGAGCAGTACCGGCCAATACCCCGGATCAGCCATTTTATGGCTTATAACTTTGTTCACAAACAAGATACAGTTTCCCAAATAGTATAATTCCGTAGTTCTTGTCAAGATCTATCATATCAAATTTAGTTTGTCTAAAAATACTAATTCTGAAAGAAAACATAACAGGGTCCGCGAGGGACCTCCAGAACCCAAATTTACAGGTATGGTCATTTAGACGAAATTCGCTTCAACCCAAGAATGCTTTTTTTGGAAACTCTATTGCACTTTTTTCAACTTTTATATCTACAACTTTACCTGCAGTTATAGAGCGGAATATCCGAGATGGAACCATACGTGAAGATGTTGTTCATTATCAGCCAGAACCAAGAGAGCCAAATTTGATATGGTACGTCTTCTGTTCCAATTTCTTCTATTTTATATTCTGATCATCGTAATCCGTCACATTTTACTACCACGCAAAACTCATATTTTTCGATTTCAATTGAATAGAGGATTCAGGTTCACAATGAGTACTCTCATCT</canonical>
            <polymorphic>CAAGACTCATTGCAATGACACAAGAGCAACACCAGAGACCCAAACCTGCCATTCCGGCAATATAAATTAGGTTTGGGTATGTGCAGTAAACTGCACCCTGGAATGCCAAGAATCCGGTGATGATCGAGTTGACCCAGAGTGCCATCATGTCAACAGTTGCCAGGAAGATCATGATCTTGTAACAGGACATTCTGATGTTGTCTTTTTCAAAAAGGACAGAAAGGATTGGGACGTAGAGGATCTAAAAGGTTTATTGATTTCATGAAGTGAGTCTTTGAGCTCACATTGAATACGATCCCATAAACCATATCGAGGATTCCATAAAGAGGACGACGTACGCCATCACGCTCGGACCATTCTTCGAAAGTATGCGCGCTGTAAATGTTTTAGAATCAGAAATGTTAGAACTCGAGTAGTACTGTAAAATGATACAATTTGTAAAATTGTGTCTTGTCTATGAACAAAGTTACAAACAAAACGAGCAGTACCGGCCAATACCMCGGATCAGCCATTTTATGGCTTATAACTTTGTTCACAAACAAGATACAGTTTCCCAAATAGTATAATTCCGTAGTTCTTGTCAAGATCTATCATATCAAATTTAGTTTGTCTAAAAATACTAATTCTGAAAGAAAACATAACAGGGTCCGCGAGGGACCTCCAGAACCCAAATTTACAGGTATGGTCATTTAGACGAAATTCGCTTCAACCCAAGAATGCTTTTTTTGGAAACTCTATTGCACTTTTTTCAACTTTTATATCTACAACTTTACCTGCAGTTATAGAGCGGAATATCCGAGATGGAACCATACGTGAAGATGTTGTTCATTATCAGCCAGAACCAAGAGAGCCAAATTTGATATGGTACGTCTTCTGTTCCAATTTCTTCTATTTTATATTCTGATCATCGTAATCCGTCACATTTTACTACCACGCAAAACTCATATTTTTCGATTTCAATTGAATAGAGGATTCAGGTTCACAATGAGTACTCTCATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>500 339 98 63</canonical_bands>
                <polymorphic_bands>839 98 63</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 374 60 54 12</canonical_bands>
                <polymorphic_bands>512 374 60 54</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCATAAAGAGGACGACGTA</pcr_primer_p1>
		<pcr_primer_p2>TAAATTTGGGTTCTGGAGGT</pcr_primer_p2>
		<pcr_amplicon_size>359</pcr_amplicon_size>
		<canonical_amplicon>TCCATAAAGAGGACGACGTACGCCATCACGCTCGGACCATTCTTCGAAAGTATGCGCGCTGTAAATGTTTTAGAATCAGAAATGTTAGAACTCGAGTAGTACTGTAAAATGATACAATTTGTAAAATTGTGTCTTGTCTATGAACAAAGTTACAAACAAAACGAGCAGTACCGGCCAATACCCCGGATCAGCCATTTTATGGCTTATAACTTTGTTCACAAACAAGATACAGTTTCCCAAATAGTATAATTCCGTAGTTCTTGTCAAGATCTATCATATCAAATTTAGTTTGTCTAAAAATACTAATTCTGAAAGAAAACATAACAGGGTCCGCGAGGGACCTCCAGAACCCAAATTTA</canonical_amplicon>
		<polymorphic_amplicon>TCCATAAAGAGGACGACGTACGCCATCACGCTCGGACCATTCTTCGAAAGTATGCGCGCTGTAAATGTTTTAGAATCAGAAATGTTAGAACTCGAGTAGTACTGTAAAATGATACAATTTGTAAAATTGTGTCTTGTCTATGAACAAAGTTACAAACAAAACGAGCAGTACCGGCCAATACCMCGGATCAGCCATTTTATGGCTTATAACTTTGTTCACAAACAAGATACAGTTTCCCAAATAGTATAATTCCGTAGTTCTTGTCAAGATCTATCATATCAAATTTAGTTTGTCTAAAAATACTAATTCTGAAAGAAAACATAACAGGGTCCGCGAGGGACCTCCAGAACCCAAATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37141</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>127098</contig_pos>
        <strand>+</strand>
        <context>AAGTCAGTTG[C/G]TTTTTTTGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTGATTGAAAACCTTGTTAGATGTCAGGCGTTCTCCTCTGAAGTCAGTTG</left_flank>
        <right_flank>TTTTTTTGTAAATGAAAATACGTCGTTTGTAAAGAAAGACTAATTAGTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAAATTTATAAGGAAAATTAGATGATGTAGAAATGTTTACCCTAACTACGGTTTCAAAAGTTCTCAACAAATTAGGAAACATTAGACAAGGAAAAGTTATTAGATGCCCAAGTCCTTGCCCAAGTAGGCAGAAGTTGATGATATTCATCAATAGGAATGCCATGTTTGGTGATTGAGCATTTTTCATTTTGAGAGTCTGAAATATTGAAACTGCATTATGTTTATGAAAATTAGTTTAATTACCGTAATGATGAGTGCTAGGATCGGCGCATTGAAAATCGAGAAAACAAAAACAATGATTCCGAAATAGAATAACTCCATATCCGGAGTTAATTCAAACAACGACTTGGAGATAGTGAGGTTTGATGTGACACTCATCCTAGACACTGTAATGATAGGCTTTGTCAGGAGCTTGAAGATCAACCGTAAAAACAAGAAAAAACAGGGTTGATTGAAAACCTTGTTAGATGTCAGGCGTTCTCCTCTGAAGTCAGTTGTTTTTTTTGTAAATGAAAATACGTCGTTTGTAAAGAAAGACTAATTAGTAAAAATCATTCTTGGAATTTGAACATGGATCTCTGAGAATCAACAAACAAAAACTAGAAAAAATTGAAAATGTTAATACTTTTACTGTTTTGGAGATGCTTCATTTATTTTAATATTGAACACACAACGCGATGATTGAAGAACTTTTCGGCAAGCTTCTCGAATTGGTCTGAAAAATTGAAATAAAATTCTTAAAAATTATTTGGCGGCTTACCTATTGAAAATCAAAATCATAACAGGATTCATATAGCAATGTAGAATCCATAATCCGTTCATAACCGTTCGAACTCGCAGGCTGAACAAATCAAAGGGCATGATGAAACCAAAAATTTGATGATGCCAGACAAGTATCATTAGTGTCAGGTAACTGGTTATAAATGTGGATTGAAATAACAACCGAATTTCGCTAGCTCGATTTTGATTGCTTCTCAATTTCTTTTGCATGAAAATTA</canonical>
            <polymorphic>ACAAAATTTATAAGGAAAATTAGATGATGTAGAAATGTTTACCCTAACTACGGTTTCAAAAGTTCTCAACAAATTAGGAAACATTAGACAAGGAAAAGTTATTAGATGCCCAAGTCCTTGCCCAAGTAGGCAGAAGTTGATGATATTCATCAATAGGAATGCCATGTTTGGTGATTGAGCATTTTTCATTTTGAGAGTCTGAAATATTGAAACTGCATTATGTTTATGAAAATTAGTTTAATTACCGTAATGATGAGTGCTAGGATCGGCGCATTGAAAATCGAGAAAACAAAAACAATGATTCCGAAATAGAATAACTCCATATCCGGAGTTAATTCAAACAACGACTTGGAGATAGTGAGGTTTGATGTGACACTCATCCTAGACACTGTAATGATAGGCTTTGTCAGGAGCTTGAAGATCAACCGTAAAAACAAGAAAAAACAGGGTTGATTGAAAACCTTGTTAGATGTCAGGCGTTCTCCTCTGAAGTCAGTTGSTTTTTTTGTAAATGAAAATACGTCGTTTGTAAAGAAAGACTAATTAGTAAAAATCATTCTTGGAATTTGAACATGGATCTCTGAGAATCAACAAACAAAAACTAGAAAAAATTGAAAATGTTAATACTTTTACTGTTTTGGAGATGCTTCATTTATTTTAATATTGAACACACAACGCGATGATTGAAGAACTTTTCGGCAAGCTTCTCGAATTGGTCTGAAAAATTGAAATAAAATTCTTAAAAATTATTTGGCGGCTTACCTATTGAAAATCAAAATCATAACAGGATTCATATAGCAATGTAGAATCCATAATCCGTTCATAACCGTTCGAACTCGCAGGCTGAACAAATCAAAGGGCATGATGAAACCAAAAATTTGATGATGCCAGACAAGTATCATTAGTGTCAGGTAACTGGTTATAAATGTGGATTGAAATAACAACCGAATTTCGCTAGCTCGATTTTGATTGCTTCTCAATTTCTTTTGCATGAAAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGTGAGGTTTGATGTGACACT</pcr_primer_p1>
		<pcr_primer_p2>AGTTTTTGTTTGTTGATTCTCAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATAGTGAGGTTTGATGTGACACTCATCCTAGACACTGTAATGATAGGCTTTGTCAGGAGCTTGAAGATCAACCGTAAAAACAAGAAAAAACAGGGTTGATTGAAAACCTTGTTAGATGTCAGGCGTTCTCCTCTGAAGTCAGTTGTTTTTTTTGTAAATGAAAATACGTCGTTTGTAAAGAAAGACTAATTAGTAAAAATCATTCTTGGAATTTGAACATGGATCTCTGAGAATCAACAAACAAAAACT</canonical_amplicon>
		<polymorphic_amplicon>ATAGTGAGGTTTGATGTGACACTCATCCTAGACACTGTAATGATAGGCTTTGTCAGGAGCTTGAAGATCAACCGTAAAAACAAGAAAAAACAGGGTTGATTGAAAACCTTGTTAGATGTCAGGCGTTCTCCTCTGAAGTCAGTTGSTTTTTTTGTAAATGAAAATACGTCGTTTGTAAAGAAAGACTAATTAGTAAAAATCATTCTTGGAATTTGAACATGGATCTCTGAGAATCAACAAACAAAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37142</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>127150</contig_pos>
        <strand>+</strand>
        <context>AATTAGTAAA[A/T]WTCATTCTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTTGTAAATGAAAATACGTCGTTTGTAAAGAAAGACTAATTAGTAAA</left_flank>
        <right_flank>ATCATTCTTGGAATTTGAACATGGATCTCTGAGAATCAACAAACAAAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTCAAAAGTTCTCAACAAATTAGGAAACATTAGACAAGGAAAAGTTATTAGATGCCCAAGTCCTTGCCCAAGTAGGCAGAAGTTGATGATATTCATCAATAGGAATGCCATGTTTGGTGATTGAGCATTTTTCATTTTGAGAGTCTGAAATATTGAAACTGCATTATGTTTATGAAAATTAGTTTAATTACCGTAATGATGAGTGCTAGGATCGGCGCATTGAAAATCGAGAAAACAAAAACAATGATTCCGAAATAGAATAACTCCATATCCGGAGTTAATTCAAACAACGACTTGGAGATAGTGAGGTTTGATGTGACACTCATCCTAGACACTGTAATGATAGGCTTTGTCAGGAGCTTGAAGATCAACCGTAAAAACAAGAAAAAACAGGGTTGATTGAAAACCTTGTTAGATGTCAGGCGTTCTCCTCTGAAGTCAGTTGTTTTTTTTGTAAATGAAAATACGTCGTTTGTAAAGAAAGACTAATTAGTAAAAATCATTCTTGGAATTTGAACATGGATCTCTGAGAATCAACAAACAAAAACTAGAAAAAATTGAAAATGTTAATACTTTTACTGTTTTGGAGATGCTTCATTTATTTTAATATTGAACACACAACGCGATGATTGAAGAACTTTTCGGCAAGCTTCTCGAATTGGTCTGAAAAATTGAAATAAAATTCTTAAAAATTATTTGGCGGCTTACCTATTGAAAATCAAAATCATAACAGGATTCATATAGCAATGTAGAATCCATAATCCGTTCATAACCGTTCGAACTCGCAGGCTGAACAAATCAAAGGGCATGATGAAACCAAAAATTTGATGATGCCAGACAAGTATCATTAGTGTCAGGTAACTGGTTATAAATGTGGATTGAAATAACAACCGAATTTCGCTAGCTCGATTTTGATTGCTTCTCAATTTCTTTTGCATGAAAATTAGATAAGTGATAACCAAATATGACAGATACGAAATATCCAAAGAAGGAAATGA</canonical>
            <polymorphic>GTTTCAAAAGTTCTCAACAAATTAGGAAACATTAGACAAGGAAAAGTTATTAGATGCCCAAGTCCTTGCCCAAGTAGGCAGAAGTTGATGATATTCATCAATAGGAATGCCATGTTTGGTGATTGAGCATTTTTCATTTTGAGAGTCTGAAATATTGAAACTGCATTATGTTTATGAAAATTAGTTTAATTACCGTAATGATGAGTGCTAGGATCGGCGCATTGAAAATCGAGAAAACAAAAACAATGATTCCGAAATAGAATAACTCCATATCCGGAGTTAATTCAAACAACGACTTGGAGATAGTGAGGTTTGATGTGACACTCATCCTAGACACTGTAATGATAGGCTTTGTCAGGAGCTTGAAGATCAACCGTAAAAACAAGAAAAAACAGGGTTGATTGAAAACCTTGTTAGATGTCAGGCGTTCTCCTCTGAAGTCAGTTGTTTTTTTTGTAAATGAAAATACGTCGTTTGTAAAGAAAGACTAATTAGTAAAWATCATTCTTGGAATTTGAACATGGATCTCTGAGAATCAACAAACAAAAACTAGAAAAAATTGAAAATGTTAATACTTTTACTGTTTTGGAGATGCTTCATTTATTTTAATATTGAACACACAACGCGATGATTGAAGAACTTTTCGGCAAGCTTCTCGAATTGGTCTGAAAAATTGAAATAAAATTCTTAAAAATTATTTGGCGGCTTACCTATTGAAAATCAAAATCATAACAGGATTCATATAGCAATGTAGAATCCATAATCCGTTCATAACCGTTCGAACTCGCAGGCTGAACAAATCAAAGGGCATGATGAAACCAAAAATTTGATGATGCCAGACAAGTATCATTAGTGTCAGGTAACTGGTTATAAATGTGGATTGAAATAACAACCGAATTTCGCTAGCTCGATTTTGATTGCTTCTCAATTTCTTTTGCATGAAAATTAGATAAGTGATAACCAAATATGACAGATACGAAATATCCAAAGAAGGAAATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTGACACTCATCCTAGACACT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTAGTTTTTGTTTGTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATGTGACACTCATCCTAGACACTGTAATGATAGGCTTTGTCAGGAGCTTGAAGATCAACCGTAAAAACAAGAAAAAACAGGGTTGATTGAAAACCTTGTTAGATGTCAGGCGTTCTCCTCTGAAGTCAGTTGTTTTTTTTGTAAATGAAAATACGTCGTTTGTAAAGAAAGACTAATTAGTAAAAATCATTCTTGGAATTTGAACATGGATCTCTGAGAATCAACAAACAAAAACTAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATGTGACACTCATCCTAGACACTGTAATGATAGGCTTTGTCAGGAGCTTGAAGATCAACCGTAAAAACAAGAAAAAACAGGGTTGATTGAAAACCTTGTTAGATGTCAGGCGTTCTCCTCTGAAGTCAGTTGTTTTTTTTGTAAATGAAAATACGTCGTTTGTAAAGAAAGACTAATTAGTAAAWATCATTCTTGGAATTTGAACATGGATCTCTGAGAATCAACAAACAAAAACTAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37143</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>127151</contig_pos>
        <strand>+</strand>
        <context>ATTAGTAAAW[A/T]TCATTCTTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTTGTAAATGAAAATACGTCGTTTGTAAAGAAAGACTAATTAGTAAAA</left_flank>
        <right_flank>TCATTCTTGGAATTTGAACATGGATCTCTGAGAATCAACAAACAAAAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAAAAGTTCTCAACAAATTAGGAAACATTAGACAAGGAAAAGTTATTAGATGCCCAAGTCCTTGCCCAAGTAGGCAGAAGTTGATGATATTCATCAATAGGAATGCCATGTTTGGTGATTGAGCATTTTTCATTTTGAGAGTCTGAAATATTGAAACTGCATTATGTTTATGAAAATTAGTTTAATTACCGTAATGATGAGTGCTAGGATCGGCGCATTGAAAATCGAGAAAACAAAAACAATGATTCCGAAATAGAATAACTCCATATCCGGAGTTAATTCAAACAACGACTTGGAGATAGTGAGGTTTGATGTGACACTCATCCTAGACACTGTAATGATAGGCTTTGTCAGGAGCTTGAAGATCAACCGTAAAAACAAGAAAAAACAGGGTTGATTGAAAACCTTGTTAGATGTCAGGCGTTCTCCTCTGAAGTCAGTTGTTTTTTTTGTAAATGAAAATACGTCGTTTGTAAAGAAAGACTAATTAGTAAAAATCATTCTTGGAATTTGAACATGGATCTCTGAGAATCAACAAACAAAAACTAGAAAAAATTGAAAATGTTAATACTTTTACTGTTTTGGAGATGCTTCATTTATTTTAATATTGAACACACAACGCGATGATTGAAGAACTTTTCGGCAAGCTTCTCGAATTGGTCTGAAAAATTGAAATAAAATTCTTAAAAATTATTTGGCGGCTTACCTATTGAAAATCAAAATCATAACAGGATTCATATAGCAATGTAGAATCCATAATCCGTTCATAACCGTTCGAACTCGCAGGCTGAACAAATCAAAGGGCATGATGAAACCAAAAATTTGATGATGCCAGACAAGTATCATTAGTGTCAGGTAACTGGTTATAAATGTGGATTGAAATAACAACCGAATTTCGCTAGCTCGATTTTGATTGCTTCTCAATTTCTTTTGCATGAAAATTAGATAAGTGATAACCAAATATGACAGATACGAAATATCCAAAGAAGGAAATGAT</canonical>
            <polymorphic>TTTCAAAAGTTCTCAACAAATTAGGAAACATTAGACAAGGAAAAGTTATTAGATGCCCAAGTCCTTGCCCAAGTAGGCAGAAGTTGATGATATTCATCAATAGGAATGCCATGTTTGGTGATTGAGCATTTTTCATTTTGAGAGTCTGAAATATTGAAACTGCATTATGTTTATGAAAATTAGTTTAATTACCGTAATGATGAGTGCTAGGATCGGCGCATTGAAAATCGAGAAAACAAAAACAATGATTCCGAAATAGAATAACTCCATATCCGGAGTTAATTCAAACAACGACTTGGAGATAGTGAGGTTTGATGTGACACTCATCCTAGACACTGTAATGATAGGCTTTGTCAGGAGCTTGAAGATCAACCGTAAAAACAAGAAAAAACAGGGTTGATTGAAAACCTTGTTAGATGTCAGGCGTTCTCCTCTGAAGTCAGTTGTTTTTTTTGTAAATGAAAATACGTCGTTTGTAAAGAAAGACTAATTAGTAAAAWTCATTCTTGGAATTTGAACATGGATCTCTGAGAATCAACAAACAAAAACTAGAAAAAATTGAAAATGTTAATACTTTTACTGTTTTGGAGATGCTTCATTTATTTTAATATTGAACACACAACGCGATGATTGAAGAACTTTTCGGCAAGCTTCTCGAATTGGTCTGAAAAATTGAAATAAAATTCTTAAAAATTATTTGGCGGCTTACCTATTGAAAATCAAAATCATAACAGGATTCATATAGCAATGTAGAATCCATAATCCGTTCATAACCGTTCGAACTCGCAGGCTGAACAAATCAAAGGGCATGATGAAACCAAAAATTTGATGATGCCAGACAAGTATCATTAGTGTCAGGTAACTGGTTATAAATGTGGATTGAAATAACAACCGAATTTCGCTAGCTCGATTTTGATTGCTTCTCAATTTCTTTTGCATGAAAATTAGATAAGTGATAACCAAATATGACAGATACGAAATATCCAAAGAAGGAAATGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTGACACTCATCCTAGACACT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTAGTTTTTGTTTGTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATGTGACACTCATCCTAGACACTGTAATGATAGGCTTTGTCAGGAGCTTGAAGATCAACCGTAAAAACAAGAAAAAACAGGGTTGATTGAAAACCTTGTTAGATGTCAGGCGTTCTCCTCTGAAGTCAGTTGTTTTTTTTGTAAATGAAAATACGTCGTTTGTAAAGAAAGACTAATTAGTAAAAATCATTCTTGGAATTTGAACATGGATCTCTGAGAATCAACAAACAAAAACTAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATGTGACACTCATCCTAGACACTGTAATGATAGGCTTTGTCAGGAGCTTGAAGATCAACCGTAAAAACAAGAAAAAACAGGGTTGATTGAAAACCTTGTTAGATGTCAGGCGTTCTCCTCTGAAGTCAGTTGTTTTTTTTGTAAATGAAAATACGTCGTTTGTAAAGAAAGACTAATTAGTAAAAWTCATTCTTGGAATTTGAACATGGATCTCTGAGAATCAACAAACAAAAACTAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37144</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>127339</contig_pos>
        <strand>+</strand>
        <context>ATAAAATTCT[C/T]AAAAATTATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTTTTCGGCAAGCTTCTCGAATTGGTCTGAAAAATTGAAATAAAATTCT</left_flank>
        <right_flank>AAAAATTATTTGGCGGCTTACCTATTGAAAATCAAAATCATAACAGGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACCGTAATGATGAGTGCTAGGATCGGCGCATTGAAAATCGAGAAAACAAAAACAATGATTCCGAAATAGAATAACTCCATATCCGGAGTTAATTCAAACAACGACTTGGAGATAGTGAGGTTTGATGTGACACTCATCCTAGACACTGTAATGATAGGCTTTGTCAGGAGCTTGAAGATCAACCGTAAAAACAAGAAAAAACAGGGTTGATTGAAAACCTTGTTAGATGTCAGGCGTTCTCCTCTGAAGTCAGTTGTTTTTTTTGTAAATGAAAATACGTCGTTTGTAAAGAAAGACTAATTAGTAAAAATCATTCTTGGAATTTGAACATGGATCTCTGAGAATCAACAAACAAAAACTAGAAAAAATTGAAAATGTTAATACTTTTACTGTTTTGGAGATGCTTCATTTATTTTAATATTGAACACACAACGCGATGATTGAAGAACTTTTCGGCAAGCTTCTCGAATTGGTCTGAAAAATTGAAATAAAATTCTTAAAAATTATTTGGCGGCTTACCTATTGAAAATCAAAATCATAACAGGATTCATATAGCAATGTAGAATCCATAATCCGTTCATAACCGTTCGAACTCGCAGGCTGAACAAATCAAAGGGCATGATGAAACCAAAAATTTGATGATGCCAGACAAGTATCATTAGTGTCAGGTAACTGGTTATAAATGTGGATTGAAATAACAACCGAATTTCGCTAGCTCGATTTTGATTGCTTCTCAATTTCTTTTGCATGAAAATTAGATAAGTGATAACCAAATATGACAGATACGAAATATCCAAAGAAGGAAATGATATAGCTAACTCGAAAATGGCAAACAACTCTGATCTCGGAACGTTATCGTCATAATCCCATCCGGGTTTCAGAAATATTATATTTCGAGTTATGCACCTGGAGATGCATACAAACAATGTCCATAATGCGAGACATACTGTTATGAATTTTACAGATTTCGAAAGTTTTTTGGGTTGCATTTGACCAGA</canonical>
            <polymorphic>TTACCGTAATGATGAGTGCTAGGATCGGCGCATTGAAAATCGAGAAAACAAAAACAATGATTCCGAAATAGAATAACTCCATATCCGGAGTTAATTCAAACAACGACTTGGAGATAGTGAGGTTTGATGTGACACTCATCCTAGACACTGTAATGATAGGCTTTGTCAGGAGCTTGAAGATCAACCGTAAAAACAAGAAAAAACAGGGTTGATTGAAAACCTTGTTAGATGTCAGGCGTTCTCCTCTGAAGTCAGTTGTTTTTTTTGTAAATGAAAATACGTCGTTTGTAAAGAAAGACTAATTAGTAAAAATCATTCTTGGAATTTGAACATGGATCTCTGAGAATCAACAAACAAAAACTAGAAAAAATTGAAAATGTTAATACTTTTACTGTTTTGGAGATGCTTCATTTATTTTAATATTGAACACACAACGCGATGATTGAAGAACTTTTCGGCAAGCTTCTCGAATTGGTCTGAAAAATTGAAATAAAATTCTYAAAAATTATTTGGCGGCTTACCTATTGAAAATCAAAATCATAACAGGATTCATATAGCAATGTAGAATCCATAATCCGTTCATAACCGTTCGAACTCGCAGGCTGAACAAATCAAAGGGCATGATGAAACCAAAAATTTGATGATGCCAGACAAGTATCATTAGTGTCAGGTAACTGGTTATAAATGTGGATTGAAATAACAACCGAATTTCGCTAGCTCGATTTTGATTGCTTCTCAATTTCTTTTGCATGAAAATTAGATAAGTGATAACCAAATATGACAGATACGAAATATCCAAAGAAGGAAATGATATAGCTAACTCGAAAATGGCAAACAACTCTGATCTCGGAACGTTATCGTCATAATCCCATCCGGGTTTCAGAAATATTATATTTCGAGTTATGCACCTGGAGATGCATACAAACAATGTCCATAATGCGAGACATACTGTTATGAATTTTACAGATTTCGAAAGTTTTTTGGGTTGCATTTGACCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>501 289 91 82 37</canonical_bands>
                <polymorphic_bands>583 289 91 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTCTGAGAATCAACAAACAAA</pcr_primer_p1>
		<pcr_primer_p2>TTATGAACGGATTATGGATTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTCTGAGAATCAACAAACAAAAACTAGAAAAAATTGAAAATGTTAATACTTTTACTGTTTTGGAGATGCTTCATTTATTTTAATATTGAACACACAACGCGATGATTGAAGAACTTTTCGGCAAGCTTCTCGAATTGGTCTGAAAAATTGAAATAAAATTCTTAAAAATTATTTGGCGGCTTACCTATTGAAAATCAAAATCATAACAGGATTCATATAGCAATGTAGAATCCATAATCCGTTCATAA</canonical_amplicon>
		<polymorphic_amplicon>ATCTCTGAGAATCAACAAACAAAAACTAGAAAAAATTGAAAATGTTAATACTTTTACTGTTTTGGAGATGCTTCATTTATTTTAATATTGAACACACAACGCGATGATTGAAGAACTTTTCGGCAAGCTTCTCGAATTGGTCTGAAAAATTGAAATAAAATTCTYAAAAATTATTTGGCGGCTTACCTATTGAAAATCAAAATCATAACAGGATTCATATAGCAATGTAGAATCCATAATCCGTTCATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37145</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>154686</contig_pos>
        <strand>+</strand>
        <context>GGGCTAGACA[A/T]TTTTTGATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAAAAATTTGGGATTTTGAAAAAAAATTGGACTTTGATGGGGCTAGACA</left_flank>
        <right_flank>TTTTTGATTCTCACAACATTTATGATGAATTTTTTGGATTTTATTGTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCCGTTTGCCTAGAAGGTCGAAATTGTTGTGATCTCCTGAGAGAGCTACAGCAGCGAGCTGTAGCTCGGCTGTCAAGTTTCCGATCACTTTGAAAATGTTAGAAACTGTGAACAAGACCTAGATTGAAAACGTTGCCTTCACAGAGCTTTTTTTACAATTCCTAGTTGTTTAGCTATTTGTCGATTTCTCAAAGAAACCTTTTTTGTGCTGAAAACGTAAAAAAAATGACGGAAAAACAATACATAGGTGAATGCAAAGTTTTCAATATATATATATATACATATATATATATATATATATATATATATATATATATATATATATATATCTGTTTTACACTTTCCAGTGATTAGAAACCTGACCTAGAGCTTCAGACTCCTGAAAATGGTTGAAATGACCAAAAATCCACTGAAAACATAAGTTTTTGGGCTCTAGATTTTGGATTCTAAAAAATTTGGGATTTTGAAAAAAAATTGGACTTTGATGGGGCTAGACAATTTTTGATTCTCACAACATTTATGATGAATTTTTTGGATTTTATTGTTTCTCAAGATCTTTAAAATCGGAAAATATCTTCAAAATCCAATTTTTTCTCAAAATCTAAAGTTTTCTTTAAAATTCAAAATAACCAACTAGATTCAGTATAGGTATATCTTATTGGCCGGTACTGTATGATTTGCATCAAATTCAAGTTTATTGGAGCTCTTCTTTAAGAAAATGAATAAACCATGCATGGTGATTCCGAATTTGGCAAACCTCGAAAACTTTAACTTGTAAATTTTGAGAAATATCATGTAACTTACCATTTGTGTTTGCAACACGAAAATTAATTCTTCCCACTTTTCAGTAGATAATTCTCATTCCTATTCCCATAGCTTCCGATTCCCACAAATTTGCATACAACAAATCTTCGTCACATTAAATAATTTGATTTCCTCTGGCACTACTAACAAATCGAAACAGCTGCTCTTCTTGCCCATCTTTTCCCACCCACAAT</canonical>
            <polymorphic>ATTCCGTTTGCCTAGAAGGTCGAAATTGTTGTGATCTCCTGAGAGAGCTACAGCAGCGAGCTGTAGCTCGGCTGTCAAGTTTCCGATCACTTTGAAAATGTTAGAAACTGTGAACAAGACCTAGATTGAAAACGTTGCCTTCACAGAGCTTTTTTTACAATTCCTAGTTGTTTAGCTATTTGTCGATTTCTCAAAGAAACCTTTTTTGTGCTGAAAACGTAAAAAAAATGACGGAAAAACAATACATAGGTGAATGCAAAGTTTTCAATATATATATATATACATATATATATATATATATATATATATATATATATATATATATATATATCTGTTTTACACTTTCCAGTGATTAGAAACCTGACCTAGAGCTTCAGACTCCTGAAAATGGTTGAAATGACCAAAAATCCACTGAAAACATAAGTTTTTGGGCTCTAGATTTTGGATTCTAAAAAATTTGGGATTTTGAAAAAAAATTGGACTTTGATGGGGCTAGACAWTTTTTGATTCTCACAACATTTATGATGAATTTTTTGGATTTTATTGTTTCTCAAGATCTTTAAAATCGGAAAATATCTTCAAAATCCAATTTTTTCTCAAAATCTAAAGTTTTCTTTAAAATTCAAAATAACCAACTAGATTCAGTATAGGTATATCTTATTGGCCGGTACTGTATGATTTGCATCAAATTCAAGTTTATTGGAGCTCTTCTTTAAGAAAATGAATAAACCATGCATGGTGATTCCGAATTTGGCAAACCTCGAAAACTTTAACTTGTAAATTTTGAGAAATATCATGTAACTTACCATTTGTGTTTGCAACACGAAAATTAATTCTTCCCACTTTTCAGTAGATAATTCTCATTCCTATTCCCATAGCTTCCGATTCCCACAAATTTGCATACAACAAATCTTCGTCACATTAAATAATTTGATTTCCTCTGGCACTACTAACAAATCGAAACAGCTGCTCTTCTTGCCCATCTTTTCCCACCCACAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>296 135 73 68 60 60 48 38 34 32 32 29 24 24 23 20 4</canonical_bands>
                <polymorphic_bands>296 135 73 68 60 60 53 48 38 34 32 32 24 23 20 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGATCTCCTGAGAGAGCTA</pcr_primer_p1>
		<pcr_primer_p2>TTGAGAAACAATAAAATCCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>525</pcr_amplicon_size>
		<canonical_amplicon>TGTGATCTCCTGAGAGAGCTACAGCAGCGAGCTGTAGCTCGGCTGTCAAGTTTCCGATCACTTTGAAAATGTTAGAAACTGTGAACAAGACCTAGATTGAAAACGTTGCCTTCACAGAGCTTTTTTTACAATTCCTAGTTGTTTAGCTATTTGTCGATTTCTCAAAGAAACCTTTTTTGTGCTGAAAACGTAAAAAAAATGACGGAAAAACAATACATAGGTGAATGCAAAGTTTTCAATATATATATATATACATATATATATATATATATATATATATATATATATATATATATATATATCTGTTTTACACTTTCCAGTGATTAGAAACCTGACCTAGAGCTTCAGACTCCTGAAAATGGTTGAAATGACCAAAAATCCACTGAAAACATAAGTTTTTGGGCTCTAGATTTTGGATTCTAAAAAATTTGGGATTTTGAAAAAAAATTGGACTTTGATGGGGCTAGACAATTTTTGATTCTCACAACATTTATGATGAATTTTTTGGATTTTATTGTTTCTCAA</canonical_amplicon>
		<polymorphic_amplicon>TGTGATCTCCTGAGAGAGCTACAGCAGCGAGCTGTAGCTCGGCTGTCAAGTTTCCGATCACTTTGAAAATGTTAGAAACTGTGAACAAGACCTAGATTGAAAACGTTGCCTTCACAGAGCTTTTTTTACAATTCCTAGTTGTTTAGCTATTTGTCGATTTCTCAAAGAAACCTTTTTTGTGCTGAAAACGTAAAAAAAATGACGGAAAAACAATACATAGGTGAATGCAAAGTTTTCAATATATATATATATACATATATATATATATATATATATATATATATATATATATATATATATATCTGTTTTACACTTTCCAGTGATTAGAAACCTGACCTAGAGCTTCAGACTCCTGAAAATGGTTGAAATGACCAAAAATCCACTGAAAACATAAGTTTTTGGGCTCTAGATTTTGGATTCTAAAAAATTTGGGATTTTGAAAAAAAATTGGACTTTGATGGGGCTAGACAWTTTTTGATTCTCACAACATTTATGATGAATTTTTTGGATTTTATTGTTTCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37146</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>155134</contig_pos>
        <strand>+</strand>
        <context>CCTCTGGCAC[C/T]ACTAACAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCATACAACAAATCTTCGTCACATTAAATAATTTGATTTCCTCTGGCAC</left_flank>
        <right_flank>ACTAACAAATCGAAACAGCTGCTCTTCTTGCCCATCTTTTCCCACCCACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAAAAAATTTGGGATTTTGAAAAAAAATTGGACTTTGATGGGGCTAGACAATTTTTGATTCTCACAACATTTATGATGAATTTTTTGGATTTTATTGTTTCTCAAGATCTTTAAAATCGGAAAATATCTTCAAAATCCAATTTTTTCTCAAAATCTAAAGTTTTCTTTAAAATTCAAAATAACCAACTAGATTCAGTATAGGTATATCTTATTGGCCGGTACTGTATGATTTGCATCAAATTCAAGTTTATTGGAGCTCTTCTTTAAGAAAATGAATAAACCATGCATGGTGATTCCGAATTTGGCAAACCTCGAAAACTTTAACTTGTAAATTTTGAGAAATATCATGTAACTTACCATTTGTGTTTGCAACACGAAAATTAATTCTTCCCACTTTTCAGTAGATAATTCTCATTCCTATTCCCATAGCTTCCGATTCCCACAAATTTGCATACAACAAATCTTCGTCACATTAAATAATTTGATTTCCTCTGGCACTACTAACAAATCGAAACAGCTGCTCTTCTTGCCCATCTTTTCCCACCCACAATGTCAAAATGTGTTTCCAAAATGAAAATGACCGGATCAGTCAAACATGTCACATGAATATCATTTTCTAGGACCCACACACACCCTCTATCTCTTCCTTTTTCTTTTTCCGTTTTTATTTGAAAAACGGAAGAATTGAGAGAGACAGGAAGCAACCAGAAGACAACGAAAAGAAGATGAAGAAGAAGAAGAAGAAAAAGAAGGGCACCACATAAATTCCTCTTCTACACGAAAAGAAGACAAACGGGTTGACCATCTGCTTTGGAGAGATACCAACCAGTAATGTTATTTGAAATTTAGAACAGTATTTATTTGAATTTCATTCATCTAATATAGAAAAGCTGAAAAGATCTTTGAAATTCAAAAAAAATACGACATGGAGCCACTCAAATTTGATGAATAACGCTATCAATCTCTATTTTTTTTCTTTCTGAAATTCCCTTAAGATCC</canonical>
            <polymorphic>CTAAAAAATTTGGGATTTTGAAAAAAAATTGGACTTTGATGGGGCTAGACAATTTTTGATTCTCACAACATTTATGATGAATTTTTTGGATTTTATTGTTTCTCAAGATCTTTAAAATCGGAAAATATCTTCAAAATCCAATTTTTTCTCAAAATCTAAAGTTTTCTTTAAAATTCAAAATAACCAACTAGATTCAGTATAGGTATATCTTATTGGCCGGTACTGTATGATTTGCATCAAATTCAAGTTTATTGGAGCTCTTCTTTAAGAAAATGAATAAACCATGCATGGTGATTCCGAATTTGGCAAACCTCGAAAACTTTAACTTGTAAATTTTGAGAAATATCATGTAACTTACCATTTGTGTTTGCAACACGAAAATTAATTCTTCCCACTTTTCAGTAGATAATTCTCATTCCTATTCCCATAGCTTCCGATTCCCACAAATTTGCATACAACAAATCTTCGTCACATTAAATAATTTGATTTCCTCTGGCACYACTAACAAATCGAAACAGCTGCTCTTCTTGCCCATCTTTTCCCACCCACAATGTCAAAATGTGTTTCCAAAATGAAAATGACCGGATCAGTCAAACATGTCACATGAATATCATTTTCTAGGACCCACACACACCCTCTATCTCTTCCTTTTTCTTTTTCCGTTTTTATTTGAAAAACGGAAGAATTGAGAGAGACAGGAAGCAACCAGAAGACAACGAAAAGAAGATGAAGAAGAAGAAGAAGAAAAAGAAGGGCACCACATAAATTCCTCTTCTACACGAAAAGAAGACAAACGGGTTGACCATCTGCTTTGGAGAGATACCAACCAGTAATGTTATTTGAAATTTAGAACAGTATTTATTTGAATTTCATTCATCTAATATAGAAAAGCTGAAAAGATCTTTGAAATTCAAAAAAAATACGACATGGAGCCACTCAAATTTGATGAATAACGCTATCAATCTCTATTTTTTTTCTTTCTGAAATTCCCTTAAGATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATTCTCATTCCTATTCCCATA</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAAAAGGAAGAGATAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAATTCTCATTCCTATTCCCATAGCTTCCGATTCCCACAAATTTGCATACAACAAATCTTCGTCACATTAAATAATTTGATTTCCTCTGGCACTACTAACAAATCGAAACAGCTGCTCTTCTTGCCCATCTTTTCCCACCCACAATGTCAAAATGTGTTTCCAAAATGAAAATGACCGGATCAGTCAAACATGTCACATGAATATCATTTTCTAGGACCCACACACACCCTCTATCTCTTCCTTTTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>TAATTCTCATTCCTATTCCCATAGCTTCCGATTCCCACAAATTTGCATACAACAAATCTTCGTCACATTAAATAATTTGATTTCCTCTGGCACYACTAACAAATCGAAACAGCTGCTCTTCTTGCCCATCTTTTCCCACCCACAATGTCAAAATGTGTTTCCAAAATGAAAATGACCGGATCAGTCAAACATGTCACATGAATATCATTTTCTAGGACCCACACACACCCTCTATCTCTTCCTTTTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37147</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>155215</contig_pos>
        <strand>+</strand>
        <context>AATGAAAATG[C/G]CCGGATCAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCCATCTTTTCCCACCCACAATGTCAAAATGTGTTTCCAAAATGAAAATG</left_flank>
        <right_flank>CCGGATCAGTCAAACATGTCACATGAATATCATTTTCTAGGACCCACACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTGGATTTTATTGTTTCTCAAGATCTTTAAAATCGGAAAATATCTTCAAAATCCAATTTTTTCTCAAAATCTAAAGTTTTCTTTAAAATTCAAAATAACCAACTAGATTCAGTATAGGTATATCTTATTGGCCGGTACTGTATGATTTGCATCAAATTCAAGTTTATTGGAGCTCTTCTTTAAGAAAATGAATAAACCATGCATGGTGATTCCGAATTTGGCAAACCTCGAAAACTTTAACTTGTAAATTTTGAGAAATATCATGTAACTTACCATTTGTGTTTGCAACACGAAAATTAATTCTTCCCACTTTTCAGTAGATAATTCTCATTCCTATTCCCATAGCTTCCGATTCCCACAAATTTGCATACAACAAATCTTCGTCACATTAAATAATTTGATTTCCTCTGGCACTACTAACAAATCGAAACAGCTGCTCTTCTTGCCCATCTTTTCCCACCCACAATGTCAAAATGTGTTTCCAAAATGAAAATGACCGGATCAGTCAAACATGTCACATGAATATCATTTTCTAGGACCCACACACACCCTCTATCTCTTCCTTTTTCTTTTTCCGTTTTTATTTGAAAAACGGAAGAATTGAGAGAGACAGGAAGCAACCAGAAGACAACGAAAAGAAGATGAAGAAGAAGAAGAAGAAAAAGAAGGGCACCACATAAATTCCTCTTCTACACGAAAAGAAGACAAACGGGTTGACCATCTGCTTTGGAGAGATACCAACCAGTAATGTTATTTGAAATTTAGAACAGTATTTATTTGAATTTCATTCATCTAATATAGAAAAGCTGAAAAGATCTTTGAAATTCAAAAAAAATACGACATGGAGCCACTCAAATTTGATGAATAACGCTATCAATCTCTATTTTTTTTCTTTCTGAAATTCCCTTAAGATCCCTCTTCCCATATGTCATCTCAAAATATGACAAAAATCTTGTTGTTTATCCCTTAACTTTTGAAATTCACATTTTGAAATTC</canonical>
            <polymorphic>TTTTTTGGATTTTATTGTTTCTCAAGATCTTTAAAATCGGAAAATATCTTCAAAATCCAATTTTTTCTCAAAATCTAAAGTTTTCTTTAAAATTCAAAATAACCAACTAGATTCAGTATAGGTATATCTTATTGGCCGGTACTGTATGATTTGCATCAAATTCAAGTTTATTGGAGCTCTTCTTTAAGAAAATGAATAAACCATGCATGGTGATTCCGAATTTGGCAAACCTCGAAAACTTTAACTTGTAAATTTTGAGAAATATCATGTAACTTACCATTTGTGTTTGCAACACGAAAATTAATTCTTCCCACTTTTCAGTAGATAATTCTCATTCCTATTCCCATAGCTTCCGATTCCCACAAATTTGCATACAACAAATCTTCGTCACATTAAATAATTTGATTTCCTCTGGCACTACTAACAAATCGAAACAGCTGCTCTTCTTGCCCATCTTTTCCCACCCACAATGTCAAAATGTGTTTCCAAAATGAAAATGSCCGGATCAGTCAAACATGTCACATGAATATCATTTTCTAGGACCCACACACACCCTCTATCTCTTCCTTTTTCTTTTTCCGTTTTTATTTGAAAAACGGAAGAATTGAGAGAGACAGGAAGCAACCAGAAGACAACGAAAAGAAGATGAAGAAGAAGAAGAAGAAAAAGAAGGGCACCACATAAATTCCTCTTCTACACGAAAAGAAGACAAACGGGTTGACCATCTGCTTTGGAGAGATACCAACCAGTAATGTTATTTGAAATTTAGAACAGTATTTATTTGAATTTCATTCATCTAATATAGAAAAGCTGAAAAGATCTTTGAAATTCAAAAAAAATACGACATGGAGCCACTCAAATTTGATGAATAACGCTATCAATCTCTATTTTTTTTCTTTCTGAAATTCCCTTAAGATCCCTCTTCCCATATGTCATCTCAAAATATGACAAAAATCTTGTTGTTTATCCCTTAACTTTTGAAATTCACATTTTGAAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACAACAAATCTTCGTCACATT</pcr_primer_p1>
		<pcr_primer_p2>TTCCTGTCTCTCTCAATTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATACAACAAATCTTCGTCACATTAAATAATTTGATTTCCTCTGGCACTACTAACAAATCGAAACAGCTGCTCTTCTTGCCCATCTTTTCCCACCCACAATGTCAAAATGTGTTTCCAAAATGAAAATGACCGGATCAGTCAAACATGTCACATGAATATCATTTTCTAGGACCCACACACACCCTCTATCTCTTCCTTTTTCTTTTTCCGTTTTTATTTGAAAAACGGAAGAATTGAGAGAGACAGGAA</canonical_amplicon>
		<polymorphic_amplicon>ATACAACAAATCTTCGTCACATTAAATAATTTGATTTCCTCTGGCACTACTAACAAATCGAAACAGCTGCTCTTCTTGCCCATCTTTTCCCACCCACAATGTCAAAATGTGTTTCCAAAATGAAAATGSCCGGATCAGTCAAACATGTCACATGAATATCATTTTCTAGGACCCACACACACCCTCTATCTCTTCCTTTTTCTTTTTCCGTTTTTATTTGAAAAACGGAAGAATTGAGAGAGACAGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37148</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>155251</contig_pos>
        <strand>+</strand>
        <context>AATATCATTT[G/T]CTAGGACCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCAAAATGAAAATGACCGGATCAGTCAAACATGTCACATGAATATCATTT</left_flank>
        <right_flank>CTAGGACCCACACACACCCTCTATCTCTTCCTTTTTCTTTTTCCGTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGAAAATATCTTCAAAATCCAATTTTTTCTCAAAATCTAAAGTTTTCTTTAAAATTCAAAATAACCAACTAGATTCAGTATAGGTATATCTTATTGGCCGGTACTGTATGATTTGCATCAAATTCAAGTTTATTGGAGCTCTTCTTTAAGAAAATGAATAAACCATGCATGGTGATTCCGAATTTGGCAAACCTCGAAAACTTTAACTTGTAAATTTTGAGAAATATCATGTAACTTACCATTTGTGTTTGCAACACGAAAATTAATTCTTCCCACTTTTCAGTAGATAATTCTCATTCCTATTCCCATAGCTTCCGATTCCCACAAATTTGCATACAACAAATCTTCGTCACATTAAATAATTTGATTTCCTCTGGCACTACTAACAAATCGAAACAGCTGCTCTTCTTGCCCATCTTTTCCCACCCACAATGTCAAAATGTGTTTCCAAAATGAAAATGACCGGATCAGTCAAACATGTCACATGAATATCATTTTCTAGGACCCACACACACCCTCTATCTCTTCCTTTTTCTTTTTCCGTTTTTATTTGAAAAACGGAAGAATTGAGAGAGACAGGAAGCAACCAGAAGACAACGAAAAGAAGATGAAGAAGAAGAAGAAGAAAAAGAAGGGCACCACATAAATTCCTCTTCTACACGAAAAGAAGACAAACGGGTTGACCATCTGCTTTGGAGAGATACCAACCAGTAATGTTATTTGAAATTTAGAACAGTATTTATTTGAATTTCATTCATCTAATATAGAAAAGCTGAAAAGATCTTTGAAATTCAAAAAAAATACGACATGGAGCCACTCAAATTTGATGAATAACGCTATCAATCTCTATTTTTTTTCTTTCTGAAATTCCCTTAAGATCCCTCTTCCCATATGTCATCTCAAAATATGACAAAAATCTTGTTGTTTATCCCTTAACTTTTGAAATTCACATTTTGAAATTCGGATATTTTCTGGAAGCCGTATAATTAACACACACC</canonical>
            <polymorphic>TCGGAAAATATCTTCAAAATCCAATTTTTTCTCAAAATCTAAAGTTTTCTTTAAAATTCAAAATAACCAACTAGATTCAGTATAGGTATATCTTATTGGCCGGTACTGTATGATTTGCATCAAATTCAAGTTTATTGGAGCTCTTCTTTAAGAAAATGAATAAACCATGCATGGTGATTCCGAATTTGGCAAACCTCGAAAACTTTAACTTGTAAATTTTGAGAAATATCATGTAACTTACCATTTGTGTTTGCAACACGAAAATTAATTCTTCCCACTTTTCAGTAGATAATTCTCATTCCTATTCCCATAGCTTCCGATTCCCACAAATTTGCATACAACAAATCTTCGTCACATTAAATAATTTGATTTCCTCTGGCACTACTAACAAATCGAAACAGCTGCTCTTCTTGCCCATCTTTTCCCACCCACAATGTCAAAATGTGTTTCCAAAATGAAAATGACCGGATCAGTCAAACATGTCACATGAATATCATTTKCTAGGACCCACACACACCCTCTATCTCTTCCTTTTTCTTTTTCCGTTTTTATTTGAAAAACGGAAGAATTGAGAGAGACAGGAAGCAACCAGAAGACAACGAAAAGAAGATGAAGAAGAAGAAGAAGAAAAAGAAGGGCACCACATAAATTCCTCTTCTACACGAAAAGAAGACAAACGGGTTGACCATCTGCTTTGGAGAGATACCAACCAGTAATGTTATTTGAAATTTAGAACAGTATTTATTTGAATTTCATTCATCTAATATAGAAAAGCTGAAAAGATCTTTGAAATTCAAAAAAAATACGACATGGAGCCACTCAAATTTGATGAATAACGCTATCAATCTCTATTTTTTTTCTTTCTGAAATTCCCTTAAGATCCCTCTTCCCATATGTCATCTCAAAATATGACAAAAATCTTGTTGTTTATCCCTTAACTTTTGAAATTCACATTTTGAAATTCGGATATTTTCTGGAAGCCGTATAATTAACACACACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATACAACAAATCTTCGTCACATT</pcr_primer_p1>
		<pcr_primer_p2>TTCCTGTCTCTCTCAATTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATACAACAAATCTTCGTCACATTAAATAATTTGATTTCCTCTGGCACTACTAACAAATCGAAACAGCTGCTCTTCTTGCCCATCTTTTCCCACCCACAATGTCAAAATGTGTTTCCAAAATGAAAATGACCGGATCAGTCAAACATGTCACATGAATATCATTTTCTAGGACCCACACACACCCTCTATCTCTTCCTTTTTCTTTTTCCGTTTTTATTTGAAAAACGGAAGAATTGAGAGAGACAGGAA</canonical_amplicon>
		<polymorphic_amplicon>ATACAACAAATCTTCGTCACATTAAATAATTTGATTTCCTCTGGCACTACTAACAAATCGAAACAGCTGCTCTTCTTGCCCATCTTTTCCCACCCACAATGTCAAAATGTGTTTCCAAAATGAAAATGACCGGATCAGTCAAACATGTCACATGAATATCATTTKCTAGGACCCACACACACCCTCTATCTCTTCCTTTTTCTTTTTCCGTTTTTATTTGAAAAACGGAAGAATTGAGAGAGACAGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37149</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>158594</contig_pos>
        <strand>+</strand>
        <context>AGGTASCCTT[A/C]Atttaacttt</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTCAGTTAACACCTATTTTGATATACAGTACAAACTGACAGGTAGCCTT</left_flank>
        <right_flank>ATTTAACTTTGAGCCAATTCATCTCGGTTTCTGTCAAAGACAGGAGAAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATTTGAGTATACAACTACTGTTTATATTTTCTTTAAATTTGATTCTTTATCTTTTTTACTCGCCCAGAAGCTGATAATTGATAAATTCTGACTTTCTTCCAGAGCACCCAAGAAATCACAAATGCCCTGAGTCCCTACCTCCTCGTTTAAAAAATGGGAGTTATAGGTTTAACAGCCGTTGAGGTACTAGCCGGATGTTTAGGACTTGGTCTAGTTCTAGCCATTCTAATAGTGGTTTGCAACTGTGTTTCGACGTGCTGCGAGACTATTTCACATCGACGCAAAAAACGAAATCAGGAAAAGTTGCCAGAAGATTATGTGGATGAGATACACAGATTGTTGCACCGGAATCAGAAACCATGTGATTACGATTGTGTGGTTGTTGAGTCGGGAAGGCAGTCGGCTAATTTAGAGGTTGGTGGCTTTCGCTTGAAACAAAATAAAACTCTTCAGTTAACACCTATTTTGATATACAGTACAAACTGACAGGTAGCCTTCATTTAACTTTGAGCCAATTCATCTCGGTTTCTGTCAAAGACAGGAGAAATTGTTAACTGATAAATTGTTTATCATAATATCACAAACTTTTTATCAGTTGACACATTTTTGTTATCTTTTATTAGAGCCGAAATAATTGAGCCCAAACCTGACCGAGTTGGGTCTTCTCAGTTACAGGTATTACGGTACTAAATGTTATACATAATAATGACTGTATTATCTACCAATTTTCTATTTCAGCATATCTCCGACACTCGATTGGATCCTAAAGCTTCTACGCCCCCAGTAAATTTTCCCATAGGAAAACCCTTGGAAGAACGGGATCTAAAGTCGATTGGAACTAGCTGTACCCCATGCAAGAATAAAAGAATGGAAAGTGAAGTGGGTTGATTTATTGTAGTTTTCAGACTGTTTTTAAGAACTTTCTCTAGGAAACTATCAACACCAACACAACTAATTCACAATCCACAATAACCGCCTCGGAGAATGGAGAGGCGATG</canonical>
            <polymorphic>ACATTTGAGTATACAACTACTGTTTATATTTTCTTTAAATTTGATTCTTTATCTTTTTTACTCGCCCAGAAGCTGATAATTGATAAATTCTGACTTTCTTCCAGAGCACCCAAGAAATCACAAATGCCCTGAGTCCCTACCTCCTCGTTTAAAAAATGGGAGTTATAGGTTTAACAGCCGTTGAGGTACTAGCCGGATGTTTAGGACTTGGTCTAGTTCTAGCCATTCTAATAGTGGTTTGCAACTGTGTTTCGACGTGCTGCGAGACTATTTCACATCGACGCAAAAAACGAAATCAGGAAAAGTTGCCAGAAGATTATGTGGATGAGATACACAGATTGTTGCACCGGAATCAGAAACCATGTGATTACGATTGTGTGGTTGTTGAGTCGGGAAGGCAGTCGGCTAATTTAGAGGTTGGTGGCTTTCGCTTGAAACAAAATAAAACTCTTCAGTTAACACCTATTTTGATATACAGTACAAACTGACAGGTAGCCTTMATTTAACTTTGAGCCAATTCATCTCGGTTTCTGTCAAAGACAGGAGAAATTGTTAACTGATAAATTGTTTATCATAATATCACAAACTTTTTATCAGTTGACACATTTTTGTTATCTTTTATTAGAGCCGAAATAATTGAGCCCAAACCTGACCGAGTTGGGTCTTCTCAGTTACAGGTATTACGGTACTAAATGTTATACATAATAATGACTGTATTATCTACCAATTTTCTATTTCAGCATATCTCCGACACTCGATTGGATCCTAAAGCTTCTACGCCCCCAGTAAATTTTCCCATAGGAAAACCCTTGGAAGAACGGGATCTAAAGTCGATTGGAACTAGCTGTACCCCATGCAAGAATAAAAGAATGGAAAGTGAAGTGGGTTGATTTATTGTAGTTTTCAGACTGTTTTTAAGAACTTTCTCTAGGAAACTATCAACACCAACACAACTAATTCACAATCCACAATAACCGCCTCGGAGAATGGAGAGGCGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATAAAACTCTTCAGTTAACACC</pcr_primer_p1>
		<pcr_primer_p2>TGCTGAAATAGAAAATTGGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>304</pcr_amplicon_size>
		<canonical_amplicon>AAAATAAAACTCTTCAGTTAACACCTATTTTGATATACAGTACAAACTGACAGGTAGCCTTCATTTAACTTTGAGCCAATTCATCTCGGTTTCTGTCAAAGACAGGAGAAATTGTTAACTGATAAATTGTTTATCATAATATCACAAACTTTTTATCAGTTGACACATTTTTGTTATCTTTTATTAGAGCCGAAATAATTGAGCCCAAACCTGACCGAGTTGGGTCTTCTCAGTTACAGGTATTACGGTACTAAATGTTATACATAATAATGACTGTATTATCTACCAATTTTCTATTTCAGCA</canonical_amplicon>
		<polymorphic_amplicon>AAAATAAAACTCTTCAGTTAACACCTATTTTGATATACAGTACAAACTGACAGGTAGCCTTMATTTAACTTTGAGCCAATTCATCTCGGTTTCTGTCAAAGACAGGAGAAATTGTTAACTGATAAATTGTTTATCATAATATCACAAACTTTTTATCAGTTGACACATTTTTGTTATCTTTTATTAGAGCCGAAATAATTGAGCCCAAACCTGACCGAGTTGGGTCTTCTCAGTTACAGGTATTACGGTACTAAATGTTATACATAATAATGACTGTATTATCTACCAATTTTCTATTTCAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37150</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>158607</contig_pos>
        <strand></strand>
        <context>ttaactttga[G/A]ccaattcatc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTATTTTGATATACAGTACAAACTGACAGGTAGCCTTCATTTAACTTTGA</left_flank>
        <right_flank>CCAATTCATCTCGGTTTCTGTCAAAGACAGGAGAAATTGTTAACTGATAA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACTACTGTTTATATTTTCTTTAAATTTGATTCTTTATCTTTTTTACTCGCCCAGAAGCTGATAATTGATAAATTCTGACTTTCTTCCAGAGCACCCAAGAAATCACAAATGCCCTGAGTCCCTACCTCCTCGTTTAAAAAATGGGAGTTATAGGTTTAACAGCCGTTGAGGTACTAGCCGGATGTTTAGGACTTGGTCTAGTTCTAGCCATTCTAATAGTGGTTTGCAACTGTGTTTCGACGTGCTGCGAGACTATTTCACATCGACGCAAAAAACGAAATCAGGAAAAGTTGCCAGAAGATTATGTGGATGAGATACACAGATTGTTGCACCGGAATCAGAAACCATGTGATTACGATTGTGTGGTTGTTGAGTCGGGAAGGCAGTCGGCTAATTTAGAGGTTGGTGGCTTTCGCTTGAAACAAAATAAAACTCTTCAGTTAACACCTATTTTGATATACAGTACAAACTGACAGGTAGCCTTCATTTAACTTTGAGCCAATTCATCTCGGTTTCTGTCAAAGACAGGAGAAATTGTTAACTGATAAATTGTTTATCATAATATCACAAACTTTTTATCAGTTGACACATTTTTGTTATCTTTTATTAGAGCCGAAATAATTGAGCCCAAACCTGACCGAGTTGGGTCTTCTCAGTTACAGGTATTACGGTACTAAATGTTATACATAATAATGACTGTATTATCTACCAATTTTCTATTTCAGCATATCTCCGACACTCGATTGGATCCTAAAGCTTCTACGCCCCCAGTAAATTTTCCCATAGGAAAACCCTTGGAAGAACGGGATCTAAAGTCGATTGGAACTAGCTGTACCCCATGCAAGAATAAAAGAATGGAAAGTGAAGTGGGTTGATTTATTGTAGTTTTCAGACTGTTTTTAAGAACTTTCTCTAGGAAACTATCAACACCAACACAACTAATTCACAATCCACAATAACCGCCTCGGAGAATGGAGAGGCGATGCATCACTGTGATG</canonical>
            <polymorphic>CAACTACTGTTTATATTTTCTTTAAATTTGATTCTTTATCTTTTTTACTCGCCCAGAAGCTGATAATTGATAAATTCTGACTTTCTTCCAGAGCACCCAAGAAATCACAAATGCCCTGAGTCCCTACCTCCTCGTTTAAAAAATGGGAGTTATAGGTTTAACAGCCGTTGAGGTACTAGCCGGATGTTTAGGACTTGGTCTAGTTCTAGCCATTCTAATAGTGGTTTGCAACTGTGTTTCGACGTGCTGCGAGACTATTTCACATCGACGCAAAAAACGAAATCAGGAAAAGTTGCCAGAAGATTATGTGGATGAGATACACAGATTGTTGCACCGGAATCAGAAACCATGTGATTACGATTGTGTGGTTGTTGAGTCGGGAAGGCAGTCGGCTAATTTAGAGGTTGGTGGCTTTCGCTTGAAACAAAATAAAACTCTTCAGTTAACACCTATTTTGATATACAGTACAAACTGACAGGTAGCCTTCATTTAACTTTGARCCAATTCATCTCGGTTTCTGTCAAAGACAGGAGAAATTGTTAACTGATAAATTGTTTATCATAATATCACAAACTTTTTATCAGTTGACACATTTTTGTTATCTTTTATTAGAGCCGAAATAATTGAGCCCAAACCTGACCGAGTTGGGTCTTCTCAGTTACAGGTATTACGGTACTAAATGTTATACATAATAATGACTGTATTATCTACCAATTTTCTATTTCAGCATATCTCCGACACTCGATTGGATCCTAAAGCTTCTACGCCCCCAGTAAATTTTCCCATAGGAAAACCCTTGGAAGAACGGGATCTAAAGTCGATTGGAACTAGCTGTACCCCATGCAAGAATAAAAGAATGGAAAGTGAAGTGGGTTGATTTATTGTAGTTTTCAGACTGTTTTTAAGAACTTTCTCTAGGAAACTATCAACACCAACACAACTAATTCACAATCCACAATAACCGCCTCGGAGAATGGAGAGGCGATGCATCACTGTGATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>183 169 130 114 105 73 71 59 30 19 18 15 14</canonical_bands>
                <polymorphic_bands>183 169 132 130 105 73 71 59 30 19 15 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTTCAGTTAACACCTATTTTGA</pcr_primer_p1>
		<pcr_primer_p2>TGCTGAAATAGAAAATTGGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>295</pcr_amplicon_size>
		<canonical_amplicon>CTCTTCAGTTAACACCTATTTTGATATACAGTACAAACTGACAGGTAGCCTTCATTTAACTTTGAGCCAATTCATCTCGGTTTCTGTCAAAGACAGGAGAAATTGTTAACTGATAAATTGTTTATCATAATATCACAAACTTTTTATCAGTTGACACATTTTTGTTATCTTTTATTAGAGCCGAAATAATTGAGCCCAAACCTGACCGAGTTGGGTCTTCTCAGTTACAGGTATTACGGTACTAAATGTTATACATAATAATGACTGTATTATCTACCAATTTTCTATTTCAGCA</canonical_amplicon>
		<polymorphic_amplicon>CTCTTCAGTTAACACCTATTTTGATATACAGTACAAACTGACAGGTAGCCTTCATTTAACTTTGARCCAATTCATCTCGGTTTCTGTCAAAGACAGGAGAAATTGTTAACTGATAAATTGTTTATCATAATATCACAAACTTTTTATCAGTTGACACATTTTTGTTATCTTTTATTAGAGCCGAAATAATTGAGCCCAAACCTGACCGAGTTGGGTCTTCTCAGTTACAGGTATTACGGTACTAAATGTTATACATAATAATGACTGTATTATCTACCAATTTTCTATTTCAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37151</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>158640</contig_pos>
        <strand></strand>
        <context>aaagacagga[G/A]aaattgttaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CCTTCATTTAACTTTGAGCCAATTCATCTCGGTTTCTGTCAAAGACAGGA</left_flank>
        <right_flank>AAATTGTTAACTGATAAATTGTTTATCATAATATCACAAACTTTTTATCA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTATCTTTTTTACTCGCCCAGAAGCTGATAATTGATAAATTCTGACTTTCTTCCAGAGCACCCAAGAAATCACAAATGCCCTGAGTCCCTACCTCCTCGTTTAAAAAATGGGAGTTATAGGTTTAACAGCCGTTGAGGTACTAGCCGGATGTTTAGGACTTGGTCTAGTTCTAGCCATTCTAATAGTGGTTTGCAACTGTGTTTCGACGTGCTGCGAGACTATTTCACATCGACGCAAAAAACGAAATCAGGAAAAGTTGCCAGAAGATTATGTGGATGAGATACACAGATTGTTGCACCGGAATCAGAAACCATGTGATTACGATTGTGTGGTTGTTGAGTCGGGAAGGCAGTCGGCTAATTTAGAGGTTGGTGGCTTTCGCTTGAAACAAAATAAAACTCTTCAGTTAACACCTATTTTGATATACAGTACAAACTGACAGGTAGCCTTCATTTAACTTTGAGCCAATTCATCTCGGTTTCTGTCAAAGACAGGAGAAATTGTTAACTGATAAATTGTTTATCATAATATCACAAACTTTTTATCAGTTGACACATTTTTGTTATCTTTTATTAGAGCCGAAATAATTGAGCCCAAACCTGACCGAGTTGGGTCTTCTCAGTTACAGGTATTACGGTACTAAATGTTATACATAATAATGACTGTATTATCTACCAATTTTCTATTTCAGCATATCTCCGACACTCGATTGGATCCTAAAGCTTCTACGCCCCCAGTAAATTTTCCCATAGGAAAACCCTTGGAAGAACGGGATCTAAAGTCGATTGGAACTAGCTGTACCCCATGCAAGAATAAAAGAATGGAAAGTGAAGTGGGTTGATTTATTGTAGTTTTCAGACTGTTTTTAAGAACTTTCTCTAGGAAACTATCAACACCAACACAACTAATTCACAATCCACAATAACCGCCTCGGAGAATGGAGAGGCGATGCATCACTGTGATGGAAAAAGTAAACGAAGAACGTGGGGTCGACTGA</canonical>
            <polymorphic>CTTTATCTTTTTTACTCGCCCAGAAGCTGATAATTGATAAATTCTGACTTTCTTCCAGAGCACCCAAGAAATCACAAATGCCCTGAGTCCCTACCTCCTCGTTTAAAAAATGGGAGTTATAGGTTTAACAGCCGTTGAGGTACTAGCCGGATGTTTAGGACTTGGTCTAGTTCTAGCCATTCTAATAGTGGTTTGCAACTGTGTTTCGACGTGCTGCGAGACTATTTCACATCGACGCAAAAAACGAAATCAGGAAAAGTTGCCAGAAGATTATGTGGATGAGATACACAGATTGTTGCACCGGAATCAGAAACCATGTGATTACGATTGTGTGGTTGTTGAGTCGGGAAGGCAGTCGGCTAATTTAGAGGTTGGTGGCTTTCGCTTGAAACAAAATAAAACTCTTCAGTTAACACCTATTTTGATATACAGTACAAACTGACAGGTAGCCTTCATTTAACTTTGAGCCAATTCATCTCGGTTTCTGTCAAAGACAGGARAAATTGTTAACTGATAAATTGTTTATCATAATATCACAAACTTTTTATCAGTTGACACATTTTTGTTATCTTTTATTAGAGCCGAAATAATTGAGCCCAAACCTGACCGAGTTGGGTCTTCTCAGTTACAGGTATTACGGTACTAAATGTTATACATAATAATGACTGTATTATCTACCAATTTTCTATTTCAGCATATCTCCGACACTCGATTGGATCCTAAAGCTTCTACGCCCCCAGTAAATTTTCCCATAGGAAAACCCTTGGAAGAACGGGATCTAAAGTCGATTGGAACTAGCTGTACCCCATGCAAGAATAAAAGAATGGAAAGTGAAGTGGGTTGATTTATTGTAGTTTTCAGACTGTTTTTAAGAACTTTCTCTAGGAAACTATCAACACCAACACAACTAATTCACAATCCACAATAACCGCCTCGGAGAATGGAGAGGCGATGCATCACTGTGATGGAAAAAGTAAACGAAGAACGTGGGGTCGACTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTTCAGTTAACACCTATTTTGA</pcr_primer_p1>
		<pcr_primer_p2>TGCTGAAATAGAAAATTGGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>295</pcr_amplicon_size>
		<canonical_amplicon>CTCTTCAGTTAACACCTATTTTGATATACAGTACAAACTGACAGGTAGCCTTCATTTAACTTTGAGCCAATTCATCTCGGTTTCTGTCAAAGACAGGAGAAATTGTTAACTGATAAATTGTTTATCATAATATCACAAACTTTTTATCAGTTGACACATTTTTGTTATCTTTTATTAGAGCCGAAATAATTGAGCCCAAACCTGACCGAGTTGGGTCTTCTCAGTTACAGGTATTACGGTACTAAATGTTATACATAATAATGACTGTATTATCTACCAATTTTCTATTTCAGCA</canonical_amplicon>
		<polymorphic_amplicon>CTCTTCAGTTAACACCTATTTTGATATACAGTACAAACTGACAGGTAGCCTTCATTTAACTTTGAGCCAATTCATCTCGGTTTCTGTCAAAGACAGGARAAATTGTTAACTGATAAATTGTTTATCATAATATCACAAACTTTTTATCAGTTGACACATTTTTGTTATCTTTTATTAGAGCCGAAATAATTGAGCCCAAACCTGACCGAGTTGGGTCTTCTCAGTTACAGGTATTACGGTACTAAATGTTATACATAATAATGACTGTATTATCTACCAATTTTCTATTTCAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37152</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>158656</contig_pos>
        <strand></strand>
        <context>gttaactgat[A/C]aattgtttat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGCCAATTCATCTCGGTTTCTGTCAAAGACAGGAGAAATTGTTAACTGAT</left_flank>
        <right_flank>AATTGTTTATCATAATATCACAAACTTTTTATCAGTTGACACATTTTTGT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCCCAGAAGCTGATAATTGATAAATTCTGACTTTCTTCCAGAGCACCCAAGAAATCACAAATGCCCTGAGTCCCTACCTCCTCGTTTAAAAAATGGGAGTTATAGGTTTAACAGCCGTTGAGGTACTAGCCGGATGTTTAGGACTTGGTCTAGTTCTAGCCATTCTAATAGTGGTTTGCAACTGTGTTTCGACGTGCTGCGAGACTATTTCACATCGACGCAAAAAACGAAATCAGGAAAAGTTGCCAGAAGATTATGTGGATGAGATACACAGATTGTTGCACCGGAATCAGAAACCATGTGATTACGATTGTGTGGTTGTTGAGTCGGGAAGGCAGTCGGCTAATTTAGAGGTTGGTGGCTTTCGCTTGAAACAAAATAAAACTCTTCAGTTAACACCTATTTTGATATACAGTACAAACTGACAGGTAGCCTTCATTTAACTTTGAGCCAATTCATCTCGGTTTCTGTCAAAGACAGGAGAAATTGTTAACTGATAAATTGTTTATCATAATATCACAAACTTTTTATCAGTTGACACATTTTTGTTATCTTTTATTAGAGCCGAAATAATTGAGCCCAAACCTGACCGAGTTGGGTCTTCTCAGTTACAGGTATTACGGTACTAAATGTTATACATAATAATGACTGTATTATCTACCAATTTTCTATTTCAGCATATCTCCGACACTCGATTGGATCCTAAAGCTTCTACGCCCCCAGTAAATTTTCCCATAGGAAAACCCTTGGAAGAACGGGATCTAAAGTCGATTGGAACTAGCTGTACCCCATGCAAGAATAAAAGAATGGAAAGTGAAGTGGGTTGATTTATTGTAGTTTTCAGACTGTTTTTAAGAACTTTCTCTAGGAAACTATCAACACCAACACAACTAATTCACAATCCACAATAACCGCCTCGGAGAATGGAGAGGCGATGCATCACTGTGATGGAAAAAGTAAACGAAGAACGTGGGGTCGACTGAGCAATTCACTTTTTGA</canonical>
            <polymorphic>CGCCCAGAAGCTGATAATTGATAAATTCTGACTTTCTTCCAGAGCACCCAAGAAATCACAAATGCCCTGAGTCCCTACCTCCTCGTTTAAAAAATGGGAGTTATAGGTTTAACAGCCGTTGAGGTACTAGCCGGATGTTTAGGACTTGGTCTAGTTCTAGCCATTCTAATAGTGGTTTGCAACTGTGTTTCGACGTGCTGCGAGACTATTTCACATCGACGCAAAAAACGAAATCAGGAAAAGTTGCCAGAAGATTATGTGGATGAGATACACAGATTGTTGCACCGGAATCAGAAACCATGTGATTACGATTGTGTGGTTGTTGAGTCGGGAAGGCAGTCGGCTAATTTAGAGGTTGGTGGCTTTCGCTTGAAACAAAATAAAACTCTTCAGTTAACACCTATTTTGATATACAGTACAAACTGACAGGTAGCCTTCATTTAACTTTGAGCCAATTCATCTCGGTTTCTGTCAAAGACAGGAGAAATTGTTAACTGATMAATTGTTTATCATAATATCACAAACTTTTTATCAGTTGACACATTTTTGTTATCTTTTATTAGAGCCGAAATAATTGAGCCCAAACCTGACCGAGTTGGGTCTTCTCAGTTACAGGTATTACGGTACTAAATGTTATACATAATAATGACTGTATTATCTACCAATTTTCTATTTCAGCATATCTCCGACACTCGATTGGATCCTAAAGCTTCTACGCCCCCAGTAAATTTTCCCATAGGAAAACCCTTGGAAGAACGGGATCTAAAGTCGATTGGAACTAGCTGTACCCCATGCAAGAATAAAAGAATGGAAAGTGAAGTGGGTTGATTTATTGTAGTTTTCAGACTGTTTTTAAGAACTTTCTCTAGGAAACTATCAACACCAACACAACTAATTCACAATCCACAATAACCGCCTCGGAGAATGGAGAGGCGATGCATCACTGTGATGGAAAAAGTAAACGAAGAACGTGGGGTCGACTGAGCAATTCACTTTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTTCAGTTAACACCTATTTTGA</pcr_primer_p1>
		<pcr_primer_p2>TGCTGAAATAGAAAATTGGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>295</pcr_amplicon_size>
		<canonical_amplicon>CTCTTCAGTTAACACCTATTTTGATATACAGTACAAACTGACAGGTAGCCTTCATTTAACTTTGAGCCAATTCATCTCGGTTTCTGTCAAAGACAGGAGAAATTGTTAACTGATAAATTGTTTATCATAATATCACAAACTTTTTATCAGTTGACACATTTTTGTTATCTTTTATTAGAGCCGAAATAATTGAGCCCAAACCTGACCGAGTTGGGTCTTCTCAGTTACAGGTATTACGGTACTAAATGTTATACATAATAATGACTGTATTATCTACCAATTTTCTATTTCAGCA</canonical_amplicon>
		<polymorphic_amplicon>CTCTTCAGTTAACACCTATTTTGATATACAGTACAAACTGACAGGTAGCCTTCATTTAACTTTGAGCCAATTCATCTCGGTTTCTGTCAAAGACAGGAGAAATTGTTAACTGATMAATTGTTTATCATAATATCACAAACTTTTTATCAGTTGACACATTTTTGTTATCTTTTATTAGAGCCGAAATAATTGAGCCCAAACCTGACCGAGTTGGGTCTTCTCAGTTACAGGTATTACGGTACTAAATGTTATACATAATAATGACTGTATTATCTACCAATTTTCTATTTCAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37153</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>160095</contig_pos>
        <strand></strand>
        <context>tttttgatat[C/A]atgcatagga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TGTTTAGCATAATATCAGCAACATTTTATCAGTTGACACATTTTTGATAT</left_flank>
        <right_flank>ATGCATAGGAAAGAAGATAAATTAGTTCAAACTGGACAGTGTGGAGGCCC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAAGACACCAGGTGTTGATAAGAATATCTAATATGATCATGACGACAATATTGTTTTTCCGATTTCACCGAAATGGTTGAAGAAAAAATAAATTCATTTGATGAGACATAAGCAGGAAATAATTAATAATGAGACAGGATTCGTTGAGTGAATATTCACAATTGGGTGCTCCCATGATTGCTCGGAATTTGCTTTTATTCGTTGATGATTCTCATCGGTCTGAGGATTCGTATATGATGAGGACGCCCCTCTGACATGTCATCATAGTCTTTGGGGAATGGGGATTTGAGGTGCCACCAATCTGGTAAACTACTGAAACTTGTAAAATTGGTTTCCAAGAATCAAACCTGAATTCCGTAAAACCTGTATTAGAAGGGTCTTTAATTAACTTTAAGCAGATTTATCTCGGTTTCTGTCAAAGATACAAAAAAGTTATCAACTGATAAATTGTTTAGCATAATATCAGCAACATTTTATCAGTTGACACATTTTTGATATCATGCATAGGAAAGAAGATAAATTAGTTCAAACTGGACAGTGTGGAGGCCCTTCTATCTTGTAACAAAAAAATACGCTCACCTGTCCACAGTAACCAAAATAACGCATAGAAGAAAACAGAGAATGAATATTGTTGATGACTTCATTTCACAATCAGCTGATATCTTCTAACCTTTCAGAACACTGTTTTATATGATTCGATGGATTCTAAAAAACATAGGCTTTAGAGAAAAAGAGGAAAAAAATTGGTAGGAGAAGTGATAATGTTGAAAACATTCTCAGTTTTTTTGCAGAATAATGTCCCCTGAACAGTCTAAGTATCTCGTTCATTTATACTCTCTATCACTTGTTGTCACCTGTTTGAAGGCGGGAAACAACAGATAGTGCGAGAGGGAAAAAGATCCGAAGAGACCCAAGTCATCCGGTCGAGGCTGGAAACACCTGACGAGGAATTAAGAAAAAAAATAGGTCGAGAGCAAAGTTCTTTCAGCTTTCTGGAAG</canonical>
            <polymorphic>CTAAGACACCAGGTGTTGATAAGAATATCTAATATGATCATGACGACAATATTGTTTTTCCGATTTCACCGAAATGGTTGAAGAAAAAATAAATTCATTTGATGAGACATAAGCAGGAAATAATTAATAATGAGACAGGATTCGTTGAGTGAATATTCACAATTGGGTGCTCCCATGATTGCTCGGAATTTGCTTTTATTCGTTGATGATTCTCATCGGTCTGAGGATTCGTATATGATGAGGACGCCCCTCTGACATGTCATCATAGTCTTTGGGGAATGGGGATTTGAGGTGCCACCAATCTGGTAAACTACTGAAACTTGTAAAATTGGTTTCCAAGAATCAAACCTGAATTCCGTAAAACCTGTATTAGAAGGGTCTTTAATTAACTTTAAGCAGATTTATCTCGGTTTCTGTCAAAGATACAAAAAAGTTATCAACTGATAAATTGTTTAGCATAATATCAGCAACATTTTATCAGTTGACACATTTTTGATATMATGCATAGGAAAGAAGATAAATTAGTTCAAACTGGACAGTGTGGAGGCCCTTCTATCTTGTAACAAAAAAATACGCTCACCTGTCCACAGTAACCAAAATAACGCATAGAAGAAAACAGAGAATGAATATTGTTGATGACTTCATTTCACAATCAGCTGATATCTTCTAACCTTTCAGAACACTGTTTTATATGATTCGATGGATTCTAAAAAACATAGGCTTTAGAGAAAAAGAGGAAAAAAATTGGTAGGAGAAGTGATAATGTTGAAAACATTCTCAGTTTTTTTGCAGAATAATGTCCCCTGAACAGTCTAAGTATCTCGTTCATTTATACTCTCTATCACTTGTTGTCACCTGTTTGAAGGCGGGAAACAACAGATAGTGCGAGAGGGAAAAAGATCCGAAGAGACCCAAGTCATCCGGTCGAGGCTGGAAACACCTGACGAGGAATTAAGAAAAAAAATAGGTCGAGAGCAAAGTTCTTTCAGCTTTCTGGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 244 135 82 39</canonical_bands>
                <polymorphic_bands>744 135 82 39</polymorphic_bands>
            </assay>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>497 339 164</canonical_bands>
                <polymorphic_bands>661 339</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCAAGAATCAAACCTGAAT</pcr_primer_p1>
		<pcr_primer_p2>CGTTATTTTGGTTACTGTGGAC</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>TTCCAAGAATCAAACCTGAATTCCGTAAAACCTGTATTAGAAGGGTCTTTAATTAACTTTAAGCAGATTTATCTCGGTTTCTGTCAAAGATACAAAAAAGTTATCAACTGATAAATTGTTTAGCATAATATCAGCAACATTTTATCAGTTGACACATTTTTGATATCATGCATAGGAAAGAAGATAAATTAGTTCAAACTGGACAGTGTGGAGGCCCTTCTATCTTGTAACAAAAAAATACGCTCACCTGTCCACAGTAACCAAAATAACG</canonical_amplicon>
		<polymorphic_amplicon>TTCCAAGAATCAAACCTGAATTCCGTAAAACCTGTATTAGAAGGGTCTTTAATTAACTTTAAGCAGATTTATCTCGGTTTCTGTCAAAGATACAAAAAAGTTATCAACTGATAAATTGTTTAGCATAATATCAGCAACATTTTATCAGTTGACACATTTTTGATATMATGCATAGGAAAGAAGATAAATTAGTTCAAACTGGACAGTGTGGAGGCCCTTCTATCTTGTAACAAAAAAATACGCTCACCTGTCCACAGTAACCAAAATAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37154</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>164802</contig_pos>
        <strand></strand>
        <context>tgaacctccg[C/T]gacaaaaaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAAGCATATTTGAAAATTTGCAAGAATTCTCTGACTTTTTGAACCTCCG</left_flank>
        <right_flank>GACAAAAAATGCAAAAATGTAGCACGATATGAGTTTTTAGAACTTTTATG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCATTTTGCTACCGTACTTCCGCAAACTATAGTGATAAGGCTTTTTTGGCAATACTCCAAGCCTTGGAGTCTCCAAGGTAAACAAAATTGGCATCATTTCCTTTTTTGCACTCGCCATGCGAGTTAATTTAGGTGTGCTTATTTCGACTATATCACTTTTTCTTATGCTTTCTGATGTACTCTACTTGGATTGTTCCACATTCAAACACTGTTTTGTTCTCAGGAACGGTTTTTCAAAATGCTTATTTTCCCGTGCTTTTTTCGATGGAATGCAGCCACCACTGAGTAGCGACTCAACAGTTCAATTTAAAGCGTTTGCGTCGAGACCAGAGATGTCCGGATTCCGGATCCCGAATTCCGTGAAAAACATTTTTGTTTGGGTTCCGGATTCCGGAAAATTTGCATTTGTCCGTATTTCGGATTCCGACAAAATTTTTTATTGCGGATTTCAAGCATATTTGAAAATTTGCAAGAATTCTCTGACTTTTTGAACCTCCGCGACAAAAAATGCAAAAATGTAGCACGATATGAGTTTTTAGAACTTTTATGTCCATTTGGAGAAATCGAAACTCCGGATTCCGTATTCCAGATTCCGGACTTTTTTTCATTCCGGATTCCGGTAAATTAGTTTCATTCCGAATTCCGAGAAAATTATTTTATTCCGGATTCTCTGGTCGAGACCAACTCTAATTTTACTGTAGAAATACGGTTATCACCATGTTCACAGCAAATAATTCTGCGTTCACAAAATACACAGAACGAAGAAGCGACACTTGGAATGTTTGTGGGTGATAAGGGCAGAAAAAAAAACAATTCCGTCGAAAACAAGGATTTCCGATGCTGTTTTTCGCCCGAGAAATGGTCTCTTTTTATGTATTCTGTTATGGTTTCCGATTTTCATTCTCGGTTTGTTCTTCTTCATTTTGATAAGAAGACGTTGTTTGACTTCTCTACTCTTCTTTTCATGATCAAAAAAATTAACGAATCACATTAGTTATG</canonical>
            <polymorphic>ATCATTTTGCTACCGTACTTCCGCAAACTATAGTGATAAGGCTTTTTTGGCAATACTCCAAGCCTTGGAGTCTCCAAGGTAAACAAAATTGGCATCATTTCCTTTTTTGCACTCGCCATGCGAGTTAATTTAGGTGTGCTTATTTCGACTATATCACTTTTTCTTATGCTTTCTGATGTACTCTACTTGGATTGTTCCACATTCAAACACTGTTTTGTTCTCAGGAACGGTTTTTCAAAATGCTTATTTTCCCGTGCTTTTTTCGATGGAATGCAGCCACCACTGAGTAGCGACTCAACAGTTCAATTTAAAGCGTTTGCGTCGAGACCAGAGATGTCCGGATTCCGGATCCCGAATTCCGTGAAAAACATTTTTGTTTGGGTTCCGGATTCCGGAAAATTTGCATTTGTCCGTATTTCGGATTCCGACAAAATTTTTTATTGCGGATTTCAAGCATATTTGAAAATTTGCAAGAATTCTCTGACTTTTTGAACCTCCGYGACAAAAAATGCAAAAATGTAGCACGATATGAGTTTTTAGAACTTTTATGTCCATTTGGAGAAATCGAAACTCCGGATTCCGTATTCCAGATTCCGGACTTTTTTTCATTCCGGATTCCGGTAAATTAGTTTCATTCCGAATTCCGAGAAAATTATTTTATTCCGGATTCTCTGGTCGAGACCAACTCTAATTTTACTGTAGAAATACGGTTATCACCATGTTCACAGCAAATAATTCTGCGTTCACAAAATACACAGAACGAAGAAGCGACACTTGGAATGTTTGTGGGTGATAAGGGCAGAAAAAAAAACAATTCCGTCGAAAACAAGGATTTCCGATGCTGTTTTTCGCCCGAGAAATGGTCTCTTTTTATGTATTCTGTTATGGTTTCCGATTTTCATTCTCGGTTTGTTCTTCTTCATTTTGATAAGAAGACGTTGTTTGACTTCTCTACTCTTCTTTTCATGATCAAAAAAATTAACGAATCACATTAGTTATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 476 21</canonical_bands>
                <polymorphic_bands>979 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTACTTGGATTGTTCCACATT</pcr_primer_p1>
		<pcr_primer_p2>CAGAATTATTTGCTGTGAACAT</pcr_primer_p2>
		<pcr_amplicon_size>559</pcr_amplicon_size>
		<canonical_amplicon>TCTACTTGGATTGTTCCACATTCAAACACTGTTTTGTTCTCAGGAACGGTTTTTCAAAATGCTTATTTTCCCGTGCTTTTTTCGATGGAATGCAGCCACCACTGAGTAGCGACTCAACAGTTCAATTTAAAGCGTTTGCGTCGAGACCAGAGATGTCCGGATTCCGGATCCCGAATTCCGTGAAAAACATTTTTGTTTGGGTTCCGGATTCCGGAAAATTTGCATTTGTCCGTATTTCGGATTCCGACAAAATTTTTTATTGCGGATTTCAAGCATATTTGAAAATTTGCAAGAATTCTCTGACTTTTTGAACCTCCGCGACAAAAAATGCAAAAATGTAGCACGATATGAGTTTTTAGAACTTTTATGTCCATTTGGAGAAATCGAAACTCCGGATTCCGTATTCCAGATTCCGGACTTTTTTTCATTCCGGATTCCGGTAAATTAGTTTCATTCCGAATTCCGAGAAAATTATTTTATTCCGGATTCTCTGGTCGAGACCAACTCTAATTTTACTGTAGAAATACGGTTATCACCATGTTCACAGCAAATAATTCTG</canonical_amplicon>
		<polymorphic_amplicon>TCTACTTGGATTGTTCCACATTCAAACACTGTTTTGTTCTCAGGAACGGTTTTTCAAAATGCTTATTTTCCCGTGCTTTTTTCGATGGAATGCAGCCACCACTGAGTAGCGACTCAACAGTTCAATTTAAAGCGTTTGCGTCGAGACCAGAGATGTCCGGATTCCGGATCCCGAATTCCGTGAAAAACATTTTTGTTTGGGTTCCGGATTCCGGAAAATTTGCATTTGTCCGTATTTCGGATTCCGACAAAATTTTTTATTGCGGATTTCAAGCATATTTGAAAATTTGCAAGAATTCTCTGACTTTTTGAACCTCCGYGACAAAAAATGCAAAAATGTAGCACGATATGAGTTTTTAGAACTTTTATGTCCATTTGGAGAAATCGAAACTCCGGATTCCGTATTCCAGATTCCGGACTTTTTTTCATTCCGGATTCCGGTAAATTAGTTTCATTCCGAATTCCGAGAAAATTATTTTATTCCGGATTCTCTGGTCGAGACCAACTCTAATTTTACTGTAGAAATACGGTTATCACCATGTTCACAGCAAATAATTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37155</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>164944</contig_pos>
        <strand></strand>
        <context>tcattccgaa[T/C]yccgagaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCCGGACTTTTTTTCATTCCGGATTCCGGTAAATTAGTTTCATTCCGAA</left_flank>
        <right_flank>TCCGAGAAAATTATTTTATTCCGGATTCTCTGGTCGAGACCAACTCTAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGACTATATCACTTTTTCTTATGCTTTCTGATGTACTCTACTTGGATTGTTCCACATTCAAACACTGTTTTGTTCTCAGGAACGGTTTTTCAAAATGCTTATTTTCCCGTGCTTTTTTCGATGGAATGCAGCCACCACTGAGTAGCGACTCAACAGTTCAATTTAAAGCGTTTGCGTCGAGACCAGAGATGTCCGGATTCCGGATCCCGAATTCCGTGAAAAACATTTTTGTTTGGGTTCCGGATTCCGGAAAATTTGCATTTGTCCGTATTTCGGATTCCGACAAAATTTTTTATTGCGGATTTCAAGCATATTTGAAAATTTGCAAGAATTCTCTGACTTTTTGAACCTCCGCGACAAAAAATGCAAAAATGTAGCACGATATGAGTTTTTAGAACTTTTATGTCCATTTGGAGAAATCGAAACTCCGGATTCCGTATTCCAGATTCCGGACTTTTTTTCATTCCGGATTCCGGTAAATTAGTTTCATTCCGAATTCCGAGAAAATTATTTTATTCCGGATTCTCTGGTCGAGACCAACTCTAATTTTACTGTAGAAATACGGTTATCACCATGTTCACAGCAAATAATTCTGCGTTCACAAAATACACAGAACGAAGAAGCGACACTTGGAATGTTTGTGGGTGATAAGGGCAGAAAAAAAAACAATTCCGTCGAAAACAAGGATTTCCGATGCTGTTTTTCGCCCGAGAAATGGTCTCTTTTTATGTATTCTGTTATGGTTTCCGATTTTCATTCTCGGTTTGTTCTTCTTCATTTTGATAAGAAGACGTTGTTTGACTTCTCTACTCTTCTTTTCATGATCAAAAAAATTAACGAATCACATTAGTTATGCAGTCAATTGTTTCTAATGGATACCATTTCGTGGTTGTCTATTCTAATCTAATTAGGTGAATTTCTACTGTAAAATGAATAGTTCTTGTGTTTCCGTTGCGAAGTTTGACCGATTCTTCCTAGATTAGAATTAGTGTTCCTC</canonical>
            <polymorphic>TTTCGACTATATCACTTTTTCTTATGCTTTCTGATGTACTCTACTTGGATTGTTCCACATTCAAACACTGTTTTGTTCTCAGGAACGGTTTTTCAAAATGCTTATTTTCCCGTGCTTTTTTCGATGGAATGCAGCCACCACTGAGTAGCGACTCAACAGTTCAATTTAAAGCGTTTGCGTCGAGACCAGAGATGTCCGGATTCCGGATCCCGAATTCCGTGAAAAACATTTTTGTTTGGGTTCCGGATTCCGGAAAATTTGCATTTGTCCGTATTTCGGATTCCGACAAAATTTTTTATTGCGGATTTCAAGCATATTTGAAAATTTGCAAGAATTCTCTGACTTTTTGAACCTCCGCGACAAAAAATGCAAAAATGTAGCACGATATGAGTTTTTAGAACTTTTATGTCCATTTGGAGAAATCGAAACTCCGGATTCCGTATTCCAGATTCCGGACTTTTTTTCATTCCGGATTCCGGTAAATTAGTTTCATTCCGAAYTCCGAGAAAATTATTTTATTCCGGATTCTCTGGTCGAGACCAACTCTAATTTTACTGTAGAAATACGGTTATCACCATGTTCACAGCAAATAATTCTGCGTTCACAAAATACACAGAACGAAGAAGCGACACTTGGAATGTTTGTGGGTGATAAGGGCAGAAAAAAAAACAATTCCGTCGAAAACAAGGATTTCCGATGCTGTTTTTCGCCCGAGAAATGGTCTCTTTTTATGTATTCTGTTATGGTTTCCGATTTTCATTCTCGGTTTGTTCTTCTTCATTTTGATAAGAAGACGTTGTTTGACTTCTCTACTCTTCTTTTCATGATCAAAAAAATTAACGAATCACATTAGTTATGCAGTCAATTGTTTCTAATGGATACCATTTCGTGGTTGTCTATTCTAATCTAATTAGGTGAATTTCTACTGTAAAATGAATAGTTCTTGTGTTTCCGTTGCGAAGTTTGACCGATTCTTCCTAGATTAGAATTAGTGTTCCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>420 212 165 83 43 34 33 10</canonical_bands>
                <polymorphic_bands>585 212 83 43 34 33 10</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>503 212 165 120</canonical_bands>
                <polymorphic_bands>668 212 120</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>164 162 149 79 69 50 45 44 43 39 34 33 29 16 14 11 10 9</canonical_bands>
                <polymorphic_bands>164 162 149 79 69 50 45 44 43 39 34 33 29 27 14 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTACTTGGATTGTTCCACATT</pcr_primer_p1>
		<pcr_primer_p2>CAGAATTATTTGCTGTGAACAT</pcr_primer_p2>
		<pcr_amplicon_size>559</pcr_amplicon_size>
		<canonical_amplicon>TCTACTTGGATTGTTCCACATTCAAACACTGTTTTGTTCTCAGGAACGGTTTTTCAAAATGCTTATTTTCCCGTGCTTTTTTCGATGGAATGCAGCCACCACTGAGTAGCGACTCAACAGTTCAATTTAAAGCGTTTGCGTCGAGACCAGAGATGTCCGGATTCCGGATCCCGAATTCCGTGAAAAACATTTTTGTTTGGGTTCCGGATTCCGGAAAATTTGCATTTGTCCGTATTTCGGATTCCGACAAAATTTTTTATTGCGGATTTCAAGCATATTTGAAAATTTGCAAGAATTCTCTGACTTTTTGAACCTCCGCGACAAAAAATGCAAAAATGTAGCACGATATGAGTTTTTAGAACTTTTATGTCCATTTGGAGAAATCGAAACTCCGGATTCCGTATTCCAGATTCCGGACTTTTTTTCATTCCGGATTCCGGTAAATTAGTTTCATTCCGAATTCCGAGAAAATTATTTTATTCCGGATTCTCTGGTCGAGACCAACTCTAATTTTACTGTAGAAATACGGTTATCACCATGTTCACAGCAAATAATTCTG</canonical_amplicon>
		<polymorphic_amplicon>TCTACTTGGATTGTTCCACATTCAAACACTGTTTTGTTCTCAGGAACGGTTTTTCAAAATGCTTATTTTCCCGTGCTTTTTTCGATGGAATGCAGCCACCACTGAGTAGCGACTCAACAGTTCAATTTAAAGCGTTTGCGTCGAGACCAGAGATGTCCGGATTCCGGATCCCGAATTCCGTGAAAAACATTTTTGTTTGGGTTCCGGATTCCGGAAAATTTGCATTTGTCCGTATTTCGGATTCCGACAAAATTTTTTATTGCGGATTTCAAGCATATTTGAAAATTTGCAAGAATTCTCTGACTTTTTGAACCTCCGCGACAAAAAATGCAAAAATGTAGCACGATATGAGTTTTTAGAACTTTTATGTCCATTTGGAGAAATCGAAACTCCGGATTCCGTATTCCAGATTCCGGACTTTTTTTCATTCCGGATTCCGGTAAATTAGTTTCATTCCGAAYTCCGAGAAAATTATTTTATTCCGGATTCTCTGGTCGAGACCAACTCTAATTTTACTGTAGAAATACGGTTATCACCATGTTCACAGCAAATAATTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37156</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>164945</contig_pos>
        <strand></strand>
        <context>cattccgaay[T/C]ccgagaaaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCCGGACTTTTTTTCATTCCGGATTCCGGTAAATTAGTTTCATTCCGAAT</left_flank>
        <right_flank>CCGAGAAAATTATTTTATTCCGGATTCTCTGGTCGAGACCAACTCTAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGACTATATCACTTTTTCTTATGCTTTCTGATGTACTCTACTTGGATTGTTCCACATTCAAACACTGTTTTGTTCTCAGGAACGGTTTTTCAAAATGCTTATTTTCCCGTGCTTTTTTCGATGGAATGCAGCCACCACTGAGTAGCGACTCAACAGTTCAATTTAAAGCGTTTGCGTCGAGACCAGAGATGTCCGGATTCCGGATCCCGAATTCCGTGAAAAACATTTTTGTTTGGGTTCCGGATTCCGGAAAATTTGCATTTGTCCGTATTTCGGATTCCGACAAAATTTTTTATTGCGGATTTCAAGCATATTTGAAAATTTGCAAGAATTCTCTGACTTTTTGAACCTCCGCGACAAAAAATGCAAAAATGTAGCACGATATGAGTTTTTAGAACTTTTATGTCCATTTGGAGAAATCGAAACTCCGGATTCCGTATTCCAGATTCCGGACTTTTTTTCATTCCGGATTCCGGTAAATTAGTTTCATTCCGAATTCCGAGAAAATTATTTTATTCCGGATTCTCTGGTCGAGACCAACTCTAATTTTACTGTAGAAATACGGTTATCACCATGTTCACAGCAAATAATTCTGCGTTCACAAAATACACAGAACGAAGAAGCGACACTTGGAATGTTTGTGGGTGATAAGGGCAGAAAAAAAAACAATTCCGTCGAAAACAAGGATTTCCGATGCTGTTTTTCGCCCGAGAAATGGTCTCTTTTTATGTATTCTGTTATGGTTTCCGATTTTCATTCTCGGTTTGTTCTTCTTCATTTTGATAAGAAGACGTTGTTTGACTTCTCTACTCTTCTTTTCATGATCAAAAAAATTAACGAATCACATTAGTTATGCAGTCAATTGTTTCTAATGGATACCATTTCGTGGTTGTCTATTCTAATCTAATTAGGTGAATTTCTACTGTAAAATGAATAGTTCTTGTGTTTCCGTTGCGAAGTTTGACCGATTCTTCCTAGATTAGAATTAGTGTTCCTCA</canonical>
            <polymorphic>TTCGACTATATCACTTTTTCTTATGCTTTCTGATGTACTCTACTTGGATTGTTCCACATTCAAACACTGTTTTGTTCTCAGGAACGGTTTTTCAAAATGCTTATTTTCCCGTGCTTTTTTCGATGGAATGCAGCCACCACTGAGTAGCGACTCAACAGTTCAATTTAAAGCGTTTGCGTCGAGACCAGAGATGTCCGGATTCCGGATCCCGAATTCCGTGAAAAACATTTTTGTTTGGGTTCCGGATTCCGGAAAATTTGCATTTGTCCGTATTTCGGATTCCGACAAAATTTTTTATTGCGGATTTCAAGCATATTTGAAAATTTGCAAGAATTCTCTGACTTTTTGAACCTCCGCGACAAAAAATGCAAAAATGTAGCACGATATGAGTTTTTAGAACTTTTATGTCCATTTGGAGAAATCGAAACTCCGGATTCCGTATTCCAGATTCCGGACTTTTTTTCATTCCGGATTCCGGTAAATTAGTTTCATTCCGAATYCCGAGAAAATTATTTTATTCCGGATTCTCTGGTCGAGACCAACTCTAATTTTACTGTAGAAATACGGTTATCACCATGTTCACAGCAAATAATTCTGCGTTCACAAAATACACAGAACGAAGAAGCGACACTTGGAATGTTTGTGGGTGATAAGGGCAGAAAAAAAAACAATTCCGTCGAAAACAAGGATTTCCGATGCTGTTTTTCGCCCGAGAAATGGTCTCTTTTTATGTATTCTGTTATGGTTTCCGATTTTCATTCTCGGTTTGTTCTTCTTCATTTTGATAAGAAGACGTTGTTTGACTTCTCTACTCTTCTTTTCATGATCAAAAAAATTAACGAATCACATTAGTTATGCAGTCAATTGTTTCTAATGGATACCATTTCGTGGTTGTCTATTCTAATCTAATTAGGTGAATTTCTACTGTAAAATGAATAGTTCTTGTGTTTCCGTTGCGAAGTTTGACCGATTCTTCCTAGATTAGAATTAGTGTTCCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>420 211 165 84 43 34 33 10</canonical_bands>
                <polymorphic_bands>585 211 84 43 34 33 10</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>504 211 165 120</canonical_bands>
                <polymorphic_bands>669 211 120</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>250 246 192 156 56 56 31 7 6</canonical_bands>
                <polymorphic_bands>250 246 199 156 56 56 31 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>164 161 149 79 69 50 45 44 43 39 34 33 29 16 15 11 10 9</canonical_bands>
                <polymorphic_bands>164 161 149 79 69 50 45 44 43 39 34 33 29 27 15 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTACTTGGATTGTTCCACATT</pcr_primer_p1>
		<pcr_primer_p2>CAGAATTATTTGCTGTGAACAT</pcr_primer_p2>
		<pcr_amplicon_size>559</pcr_amplicon_size>
		<canonical_amplicon>TCTACTTGGATTGTTCCACATTCAAACACTGTTTTGTTCTCAGGAACGGTTTTTCAAAATGCTTATTTTCCCGTGCTTTTTTCGATGGAATGCAGCCACCACTGAGTAGCGACTCAACAGTTCAATTTAAAGCGTTTGCGTCGAGACCAGAGATGTCCGGATTCCGGATCCCGAATTCCGTGAAAAACATTTTTGTTTGGGTTCCGGATTCCGGAAAATTTGCATTTGTCCGTATTTCGGATTCCGACAAAATTTTTTATTGCGGATTTCAAGCATATTTGAAAATTTGCAAGAATTCTCTGACTTTTTGAACCTCCGCGACAAAAAATGCAAAAATGTAGCACGATATGAGTTTTTAGAACTTTTATGTCCATTTGGAGAAATCGAAACTCCGGATTCCGTATTCCAGATTCCGGACTTTTTTTCATTCCGGATTCCGGTAAATTAGTTTCATTCCGAATTCCGAGAAAATTATTTTATTCCGGATTCTCTGGTCGAGACCAACTCTAATTTTACTGTAGAAATACGGTTATCACCATGTTCACAGCAAATAATTCTG</canonical_amplicon>
		<polymorphic_amplicon>TCTACTTGGATTGTTCCACATTCAAACACTGTTTTGTTCTCAGGAACGGTTTTTCAAAATGCTTATTTTCCCGTGCTTTTTTCGATGGAATGCAGCCACCACTGAGTAGCGACTCAACAGTTCAATTTAAAGCGTTTGCGTCGAGACCAGAGATGTCCGGATTCCGGATCCCGAATTCCGTGAAAAACATTTTTGTTTGGGTTCCGGATTCCGGAAAATTTGCATTTGTCCGTATTTCGGATTCCGACAAAATTTTTTATTGCGGATTTCAAGCATATTTGAAAATTTGCAAGAATTCTCTGACTTTTTGAACCTCCGCGACAAAAAATGCAAAAATGTAGCACGATATGAGTTTTTAGAACTTTTATGTCCATTTGGAGAAATCGAAACTCCGGATTCCGTATTCCAGATTCCGGACTTTTTTTCATTCCGGATTCCGGTAAATTAGTTTCATTCCGAATYCCGAGAAAATTATTTTATTCCGGATTCTCTGGTCGAGACCAACTCTAATTTTACTGTAGAAATACGGTTATCACCATGTTCACAGCAAATAATTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37157</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>165102</contig_pos>
        <strand></strand>
        <context>GTGATAAGGG[C/T]AGAAAAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATACACAGAACGAAGAAGCGACACTTGGAATGTTTGTGGGTGATAAGGG</left_flank>
        <right_flank>AGAAAAAAAAACAATTCCGTCGAAAACAAGGATTTCCGATGCTGTTTTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCAATTTAAAGCGTTTGCGTCGAGACCAGAGATGTCCGGATTCCGGATCCCGAATTCCGTGAAAAACATTTTTGTTTGGGTTCCGGATTCCGGAAAATTTGCATTTGTCCGTATTTCGGATTCCGACAAAATTTTTTATTGCGGATTTCAAGCATATTTGAAAATTTGCAAGAATTCTCTGACTTTTTGAACCTCCGCGACAAAAAATGCAAAAATGTAGCACGATATGAGTTTTTAGAACTTTTATGTCCATTTGGAGAAATCGAAACTCCGGATTCCGTATTCCAGATTCCGGACTTTTTTTCATTCCGGATTCCGGTAAATTAGTTTCATTCCGAATTCCGAGAAAATTATTTTATTCCGGATTCTCTGGTCGAGACCAACTCTAATTTTACTGTAGAAATACGGTTATCACCATGTTCACAGCAAATAATTCTGCGTTCACAAAATACACAGAACGAAGAAGCGACACTTGGAATGTTTGTGGGTGATAAGGGCAGAAAAAAAAACAATTCCGTCGAAAACAAGGATTTCCGATGCTGTTTTTCGCCCGAGAAATGGTCTCTTTTTATGTATTCTGTTATGGTTTCCGATTTTCATTCTCGGTTTGTTCTTCTTCATTTTGATAAGAAGACGTTGTTTGACTTCTCTACTCTTCTTTTCATGATCAAAAAAATTAACGAATCACATTAGTTATGCAGTCAATTGTTTCTAATGGATACCATTTCGTGGTTGTCTATTCTAATCTAATTAGGTGAATTTCTACTGTAAAATGAATAGTTCTTGTGTTTCCGTTGCGAAGTTTGACCGATTCTTCCTAGATTAGAATTAGTGTTCCTCAATTGACAACACTATAAATCATGGTGTACGTTTATTTATCATTAATGTGTTATCAGCTGGGTGCTACCTACCCTGGCACGGATGGCAATCAATTCCCATACAAACAGTGAAAGTTTGCAATCATTTATCGCCATAATTTCGTCAGTTTTACTACATGC</canonical>
            <polymorphic>GTTCAATTTAAAGCGTTTGCGTCGAGACCAGAGATGTCCGGATTCCGGATCCCGAATTCCGTGAAAAACATTTTTGTTTGGGTTCCGGATTCCGGAAAATTTGCATTTGTCCGTATTTCGGATTCCGACAAAATTTTTTATTGCGGATTTCAAGCATATTTGAAAATTTGCAAGAATTCTCTGACTTTTTGAACCTCCGCGACAAAAAATGCAAAAATGTAGCACGATATGAGTTTTTAGAACTTTTATGTCCATTTGGAGAAATCGAAACTCCGGATTCCGTATTCCAGATTCCGGACTTTTTTTCATTCCGGATTCCGGTAAATTAGTTTCATTCCGAATTCCGAGAAAATTATTTTATTCCGGATTCTCTGGTCGAGACCAACTCTAATTTTACTGTAGAAATACGGTTATCACCATGTTCACAGCAAATAATTCTGCGTTCACAAAATACACAGAACGAAGAAGCGACACTTGGAATGTTTGTGGGTGATAAGGGYAGAAAAAAAAACAATTCCGTCGAAAACAAGGATTTCCGATGCTGTTTTTCGCCCGAGAAATGGTCTCTTTTTATGTATTCTGTTATGGTTTCCGATTTTCATTCTCGGTTTGTTCTTCTTCATTTTGATAAGAAGACGTTGTTTGACTTCTCTACTCTTCTTTTCATGATCAAAAAAATTAACGAATCACATTAGTTATGCAGTCAATTGTTTCTAATGGATACCATTTCGTGGTTGTCTATTCTAATCTAATTAGGTGAATTTCTACTGTAAAATGAATAGTTCTTGTGTTTCCGTTGCGAAGTTTGACCGATTCTTCCTAGATTAGAATTAGTGTTCCTCAATTGACAACACTATAAATCATGGTGTACGTTTATTTATCATTAATGTGTTATCAGCTGGGTGCTACCTACCCTGGCACGGATGGCAATCAATTCCCATACAAACAGTGAAAGTTTGCAATCATTTATCGCCATAATTTCGTCAGTTTTACTACATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAATTCTGCGTTCACAAAATAC</pcr_primer_p1>
		<pcr_primer_p2>TTTGATCATGAAAAGAAGAGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATAATTCTGCGTTCACAAAATACACAGAACGAAGAAGCGACACTTGGAATGTTTGTGGGTGATAAGGGCAGAAAAAAAAACAATTCCGTCGAAAACAAGGATTTCCGATGCTGTTTTTCGCCCGAGAAATGGTCTCTTTTTATGTATTCTGTTATGGTTTCCGATTTTCATTCTCGGTTTGTTCTTCTTCATTTTGATAAGAAGACGTTGTTTGACTTCTCTACTCTTCTTTTCATGATCAAA</canonical_amplicon>
		<polymorphic_amplicon>ATAATTCTGCGTTCACAAAATACACAGAACGAAGAAGCGACACTTGGAATGTTTGTGGGTGATAAGGGYAGAAAAAAAAACAATTCCGTCGAAAACAAGGATTTCCGATGCTGTTTTTCGCCCGAGAAATGGTCTCTTTTTATGTATTCTGTTATGGTTTCCGATTTTCATTCTCGGTTTGTTCTTCTTCATTTTGATAAGAAGACGTTGTTTGACTTCTCTACTCTTCTTTTCATGATCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37158</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>176503</contig_pos>
        <strand>+</strand>
        <context>GAGCGAAATA[C/T]CAAGTAAAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTGTCATGTTCTTCTCATCTTCTGTTCAGACATTCTATGAGCGAAATA</left_flank>
        <right_flank>CAAGTAAAGCTTGAAGGTGCAGTGCAAACAGTTGAGATTCATTGTTTTAG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACTTTTCAGCGAATCTTTCGATCCATCTCCTAGGATTTTCGAATTTTCTCTTTTTAGATTTCGTATACTTCTAGGCAATCAATAAATGTTTTGATTGATGAAAACATTCTAAAGTTCAAGATGCAACTAATTCGCATGAGCCATATGATTAACTAATATTGACTAGTCTCTGGAAGCTGAAAACGACTAGAATTCAATGAAGGAACTGCTCAGAATCAAGACATACTTCTTTTTTCTGCAAGTCGAGAGTTCTAAACTCACGATCTTTAGGATTTCCGTAGTTCATTTTTGAATCTATACATTATTCTCGGAAATCCGAACGATCTAGAATTTCTTATACAGTTATCGCTGATAAGTTATTGTTATTCTCTCATTGGTCATGTTTGATATTTCCGTCCATTCAAGCTCATTTTTACTTTCAACCTTCTGAATCCCTAAGTTTTACACTATTGTCATGTTCTTCTCATCTTCTGTTCAGACATTCTATGAGCGAAATACCAAGTAAAGCTTGAAGGTGCAGTGCAAACAGTTGAGATTCATTGTTTTAGAAGTTTACGGCAGAACTAAATATTCTGATCTAGTCATTACGGCGAATAAAAAGTAGTACTTGAAAACAGCCACGAAAACGGTTTCACCACCTAATCCTCCTAATTTTTTCAGAACTAAGCGACGCCAACTGATGTCACGACACCAGACCCGTCATGTAGCCCGTCATCCATGCGAATTCCATCAATTTCTTCAGTCATACCATGCAATAATATCTCCAATATTTCTCGACGAAGTCAAACGTCCAGGCCCACCACCAATATTTCCTTGATACTTAAATCCTGATGATCTTCTTCTTGTTTTTTCTCCGTTTTCCTTTCCATTCTTGAAATATACAATTTTCCGAAAATTTCAAATCCTGGCTAAAAATGTAATCTCAATACTTCTCTTCCCCCTACAACCATTTTGTCAATTCTCCTTTTCCCGTTCCCCGAACATTTTCACTGTATTAT</canonical>
            <polymorphic>AGACTTTTCAGCGAATCTTTCGATCCATCTCCTAGGATTTTCGAATTTTCTCTTTTTAGATTTCGTATACTTCTAGGCAATCAATAAATGTTTTGATTGATGAAAACATTCTAAAGTTCAAGATGCAACTAATTCGCATGAGCCATATGATTAACTAATATTGACTAGTCTCTGGAAGCTGAAAACGACTAGAATTCAATGAAGGAACTGCTCAGAATCAAGACATACTTCTTTTTTCTGCAAGTCGAGAGTTCTAAACTCACGATCTTTAGGATTTCCGTAGTTCATTTTTGAATCTATACATTATTCTCGGAAATCCGAACGATCTAGAATTTCTTATACAGTTATCGCTGATAAGTTATTGTTATTCTCTCATTGGTCATGTTTGATATTTCCGTCCATTCAAGCTCATTTTTACTTTCAACCTTCTGAATCCCTAAGTTTTACACTATTGTCATGTTCTTCTCATCTTCTGTTCAGACATTCTATGAGCGAAATAYCAAGTAAAGCTTGAAGGTGCAGTGCAAACAGTTGAGATTCATTGTTTTAGAAGTTTACGGCAGAACTAAATATTCTGATCTAGTCATTACGGCGAATAAAAAGTAGTACTTGAAAACAGCCACGAAAACGGTTTCACCACCTAATCCTCCTAATTTTTTCAGAACTAAGCGACGCCAACTGATGTCACGACACCAGACCCGTCATGTAGCCCGTCATCCATGCGAATTCCATCAATTTCTTCAGTCATACCATGCAATAATATCTCCAATATTTCTCGACGAAGTCAAACGTCCAGGCCCACCACCAATATTTCCTTGATACTTAAATCCTGATGATCTTCTTCTTGTTTTTTCTCCGTTTTCCTTTCCATTCTTGAAATATACAATTTTCCGAAAATTTCAAATCCTGGCTAAAAATGTAATCTCAATACTTCTCTTCCCCCTACAACCATTTTGTCAATTCTCCTTTTCCCGTTCCCCGAACATTTTCACTGTATTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGTTATTCTCTCATTGGTCAT</pcr_primer_p1>
		<pcr_primer_p2>GTACTACTTTTTATTCGCCGTAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTGTTATTCTCTCATTGGTCATGTTTGATATTTCCGTCCATTCAAGCTCATTTTTACTTTCAACCTTCTGAATCCCTAAGTTTTACACTATTGTCATGTTCTTCTCATCTTCTGTTCAGACATTCTATGAGCGAAATACCAAGTAAAGCTTGAAGGTGCAGTGCAAACAGTTGAGATTCATTGTTTTAGAAGTTTACGGCAGAACTAAATATTCTGATCTAGTCATTACGGCGAATAAAAAGTAGTAC</canonical_amplicon>
		<polymorphic_amplicon>ATTGTTATTCTCTCATTGGTCATGTTTGATATTTCCGTCCATTCAAGCTCATTTTTACTTTCAACCTTCTGAATCCCTAAGTTTTACACTATTGTCATGTTCTTCTCATCTTCTGTTCAGACATTCTATGAGCGAAATAYCAAGTAAAGCTTGAAGGTGCAGTGCAAACAGTTGAGATTCATTGTTTTAGAAGTTTACGGCAGAACTAAATATTCTGATCTAGTCATTACGGCGAATAAAAAGTAGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37159</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>176521</contig_pos>
        <strand>+</strand>
        <context>AGCTTGAAGG[C/T]GCAGTGCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTTCTGTTCAGACATTCTATGAGCGAAATACCAAGTAAAGCTTGAAGG</left_flank>
        <right_flank>GCAGTGCAAACAGTTGAGATTCATTGTTTTAGAAGTTTACGGCAGAACTA</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGATCCATCTCCTAGGATTTTCGAATTTTCTCTTTTTAGATTTCGTATACTTCTAGGCAATCAATAAATGTTTTGATTGATGAAAACATTCTAAAGTTCAAGATGCAACTAATTCGCATGAGCCATATGATTAACTAATATTGACTAGTCTCTGGAAGCTGAAAACGACTAGAATTCAATGAAGGAACTGCTCAGAATCAAGACATACTTCTTTTTTCTGCAAGTCGAGAGTTCTAAACTCACGATCTTTAGGATTTCCGTAGTTCATTTTTGAATCTATACATTATTCTCGGAAATCCGAACGATCTAGAATTTCTTATACAGTTATCGCTGATAAGTTATTGTTATTCTCTCATTGGTCATGTTTGATATTTCCGTCCATTCAAGCTCATTTTTACTTTCAACCTTCTGAATCCCTAAGTTTTACACTATTGTCATGTTCTTCTCATCTTCTGTTCAGACATTCTATGAGCGAAATACCAAGTAAAGCTTGAAGGTGCAGTGCAAACAGTTGAGATTCATTGTTTTAGAAGTTTACGGCAGAACTAAATATTCTGATCTAGTCATTACGGCGAATAAAAAGTAGTACTTGAAAACAGCCACGAAAACGGTTTCACCACCTAATCCTCCTAATTTTTTCAGAACTAAGCGACGCCAACTGATGTCACGACACCAGACCCGTCATGTAGCCCGTCATCCATGCGAATTCCATCAATTTCTTCAGTCATACCATGCAATAATATCTCCAATATTTCTCGACGAAGTCAAACGTCCAGGCCCACCACCAATATTTCCTTGATACTTAAATCCTGATGATCTTCTTCTTGTTTTTTCTCCGTTTTCCTTTCCATTCTTGAAATATACAATTTTCCGAAAATTTCAAATCCTGGCTAAAAATGTAATCTCAATACTTCTCTTCCCCCTACAACCATTTTGTCAATTCTCCTTTTCCCGTTCCCCGAACATTTTCACTGTATTATCCTTTACAATTAGCTGCT</canonical>
            <polymorphic>TTCGATCCATCTCCTAGGATTTTCGAATTTTCTCTTTTTAGATTTCGTATACTTCTAGGCAATCAATAAATGTTTTGATTGATGAAAACATTCTAAAGTTCAAGATGCAACTAATTCGCATGAGCCATATGATTAACTAATATTGACTAGTCTCTGGAAGCTGAAAACGACTAGAATTCAATGAAGGAACTGCTCAGAATCAAGACATACTTCTTTTTTCTGCAAGTCGAGAGTTCTAAACTCACGATCTTTAGGATTTCCGTAGTTCATTTTTGAATCTATACATTATTCTCGGAAATCCGAACGATCTAGAATTTCTTATACAGTTATCGCTGATAAGTTATTGTTATTCTCTCATTGGTCATGTTTGATATTTCCGTCCATTCAAGCTCATTTTTACTTTCAACCTTCTGAATCCCTAAGTTTTACACTATTGTCATGTTCTTCTCATCTTCTGTTCAGACATTCTATGAGCGAAATACCAAGTAAAGCTTGAAGGYGCAGTGCAAACAGTTGAGATTCATTGTTTTAGAAGTTTACGGCAGAACTAAATATTCTGATCTAGTCATTACGGCGAATAAAAAGTAGTACTTGAAAACAGCCACGAAAACGGTTTCACCACCTAATCCTCCTAATTTTTTCAGAACTAAGCGACGCCAACTGATGTCACGACACCAGACCCGTCATGTAGCCCGTCATCCATGCGAATTCCATCAATTTCTTCAGTCATACCATGCAATAATATCTCCAATATTTCTCGACGAAGTCAAACGTCCAGGCCCACCACCAATATTTCCTTGATACTTAAATCCTGATGATCTTCTTCTTGTTTTTTCTCCGTTTTCCTTTCCATTCTTGAAATATACAATTTTCCGAAAATTTCAAATCCTGGCTAAAAATGTAATCTCAATACTTCTCTTCCCCCTACAACCATTTTGTCAATTCTCCTTTTCCCGTTCCCCGAACATTTTCACTGTATTATCCTTTACAATTAGCTGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>279 264 230 115 107 5</canonical_bands>
                <polymorphic_bands>284 264 230 115 107</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>244 187 186 109 98 71 48 27 14 5 5 3 3</canonical_bands>
                <polymorphic_bands>244 187 186 109 98 76 48 27 14 5 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGTTATTCTCTCATTGGTCAT</pcr_primer_p1>
		<pcr_primer_p2>GTACTACTTTTTATTCGCCGTAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTGTTATTCTCTCATTGGTCATGTTTGATATTTCCGTCCATTCAAGCTCATTTTTACTTTCAACCTTCTGAATCCCTAAGTTTTACACTATTGTCATGTTCTTCTCATCTTCTGTTCAGACATTCTATGAGCGAAATACCAAGTAAAGCTTGAAGGTGCAGTGCAAACAGTTGAGATTCATTGTTTTAGAAGTTTACGGCAGAACTAAATATTCTGATCTAGTCATTACGGCGAATAAAAAGTAGTAC</canonical_amplicon>
		<polymorphic_amplicon>ATTGTTATTCTCTCATTGGTCATGTTTGATATTTCCGTCCATTCAAGCTCATTTTTACTTTCAACCTTCTGAATCCCTAAGTTTTACACTATTGTCATGTTCTTCTCATCTTCTGTTCAGACATTCTATGAGCGAAATACCAAGTAAAGCTTGAAGGYGCAGTGCAAACAGTTGAGATTCATTGTTTTAGAAGTTTACGGCAGAACTAAATATTCTGATCTAGTCATTACGGCGAATAAAAAGTAGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37160</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>177232</contig_pos>
        <strand>+</strand>
        <context>AAAACAAATG[A/G]CCtaaacttt</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTCCAGGTTTCTCATGCAATTGATAACAGCATTCATCAAAACAAATG</left_flank>
        <right_flank>CCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTT</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCAATTTCTTCAGTCATACCATGCAATAATATCTCCAATATTTCTCGACGAAGTCAAACGTCCAGGCCCACCACCAATATTTCCTTGATACTTAAATCCTGATGATCTTCTTCTTGTTTTTTCTCCGTTTTCCTTTCCATTCTTGAAATATACAATTTTCCGAAAATTTCAAATCCTGGCTAAAAATGTAATCTCAATACTTCTCTTCCCCCTACAACCATTTTGTCAATTCTCCTTTTCCCGTTCCCCGAACATTTTCACTGTATTATCCTTTACAATTAGCTGCTAATCCTTTTTTCAAAACTCATTCATGATTGCTATTATAATTATTATTTGTCGCATCTGATTCCAATTACTATCAATGTTTTAAAAAATTATGTAATCTAACGGAATTTATTTGGGAACGAAATGAAACTCGTTTGAATCTTTATGTCTTTTTGGGAACATTTTTTCCAGGTTTCTCATGCAATTGATAACAGCATTCATCAAAACAAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACACGGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGCCAAGGCCTTCGAATTTTAACATCGGAAAACTTTACCGGCGGCTTGGCCAAAATAAAAAAGGCCCGATTTCTGGTCAGGCCATTTACAACCCTGTGGGTCCGTTGCAGTATCCATAACAGTGACAAGTTTCGATTAGTTAATTCACAATTCTTTTATTCACATTTTCTCACAAAAAATGTTGAAACAAA</canonical>
            <polymorphic>CATCAATTTCTTCAGTCATACCATGCAATAATATCTCCAATATTTCTCGACGAAGTCAAACGTCCAGGCCCACCACCAATATTTCCTTGATACTTAAATCCTGATGATCTTCTTCTTGTTTTTTCTCCGTTTTCCTTTCCATTCTTGAAATATACAATTTTCCGAAAATTTCAAATCCTGGCTAAAAATGTAATCTCAATACTTCTCTTCCCCCTACAACCATTTTGTCAATTCTCCTTTTCCCGTTCCCCGAACATTTTCACTGTATTATCCTTTACAATTAGCTGCTAATCCTTTTTTCAAAACTCATTCATGATTGCTATTATAATTATTATTTGTCGCATCTGATTCCAATTACTATCAATGTTTTAAAAAATTATGTAATCTAACGGAATTTATTTGGGAACGAAATGAAACTCGTTTGAATCTTTATGTCTTTTTGGGAACATTTTTTCCAGGTTTCTCATGCAATTGATAACAGCATTCATCAAAACAAATGRCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACACGGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGCCAAGGCCTTCGAATTTTAACATCGGAAAACTTTACCGGCGGCTTGGCCAAAATAAAAAAGGCCCGATTTCTGGTCAGGCCATTTACAACCCTGTGGGTCCGTTGCAGTATCCATAACAGTGACAAGTTTCGATTAGTTAATTCACAATTCTTTTATTCACATTTTCTCACAAAAAATGTTGAAACAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>432 110 95 68 57 53 41 33 29 27 17 17 15 6</canonical_bands>
                <polymorphic_bands>465 110 95 68 57 53 41 29 27 17 17 15 6</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>216 113 110 103 86 68 57 53 36 29 27 17 17 17 16 15 9 6 5</canonical_bands>
                <polymorphic_bands>233 113 110 103 86 68 57 53 36 29 27 17 17 16 15 9 6 5</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 110 95 57 53 46 41 33 32 27 6</canonical_bands>
                <polymorphic_bands>533 110 95 57 53 46 41 32 27 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATGTCTTTTTGGGAACATTT</pcr_primer_p1>
		<pcr_primer_p2>GCCTAGAAAATTTCGGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>383</pcr_amplicon_size>
		<canonical_amplicon>TTATGTCTTTTTGGGAACATTTTTTCCAGGTTTCTCATGCAATTGATAACAGCATTCATCAAAACAAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACACGGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGC</canonical_amplicon>
		<polymorphic_amplicon>TTATGTCTTTTTGGGAACATTTTTTCCAGGTTTCTCATGCAATTGATAACAGCATTCATCAAAACAAATGRCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACACGGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37161</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>177277</contig_pos>
        <strand></strand>
        <context>ctagaaaact[C/A]aacttgcaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACT</left_flank>
        <right_flank>AACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGACGAAGTCAAACGTCCAGGCCCACCACCAATATTTCCTTGATACTTAAATCCTGATGATCTTCTTCTTGTTTTTTCTCCGTTTTCCTTTCCATTCTTGAAATATACAATTTTCCGAAAATTTCAAATCCTGGCTAAAAATGTAATCTCAATACTTCTCTTCCCCCTACAACCATTTTGTCAATTCTCCTTTTCCCGTTCCCCGAACATTTTCACTGTATTATCCTTTACAATTAGCTGCTAATCCTTTTTTCAAAACTCATTCATGATTGCTATTATAATTATTATTTGTCGCATCTGATTCCAATTACTATCAATGTTTTAAAAAATTATGTAATCTAACGGAATTTATTTGGGAACGAAATGAAACTCGTTTGAATCTTTATGTCTTTTTGGGAACATTTTTTCCAGGTTTCTCATGCAATTGATAACAGCATTCATCAAAACAAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACACGGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGCCAAGGCCTTCGAATTTTAACATCGGAAAACTTTACCGGCGGCTTGGCCAAAATAAAAAAGGCCCGATTTCTGGTCAGGCCATTTACAACCCTGTGGGTCCGTTGCAGTATCCATAACAGTGACAAGTTTCGATTAGTTAATTCACAATTCTTTTATTCACATTTTCTCACAAAAAATGTTGAAACAAAAGACAATTTTCAAAGAAAAAGGGGCGAATGGTCAGGGTGTTCTTC</canonical>
            <polymorphic>CTCGACGAAGTCAAACGTCCAGGCCCACCACCAATATTTCCTTGATACTTAAATCCTGATGATCTTCTTCTTGTTTTTTCTCCGTTTTCCTTTCCATTCTTGAAATATACAATTTTCCGAAAATTTCAAATCCTGGCTAAAAATGTAATCTCAATACTTCTCTTCCCCCTACAACCATTTTGTCAATTCTCCTTTTCCCGTTCCCCGAACATTTTCACTGTATTATCCTTTACAATTAGCTGCTAATCCTTTTTTCAAAACTCATTCATGATTGCTATTATAATTATTATTTGTCGCATCTGATTCCAATTACTATCAATGTTTTAAAAAATTATGTAATCTAACGGAATTTATTTGGGAACGAAATGAAACTCGTTTGAATCTTTATGTCTTTTTGGGAACATTTTTTCCAGGTTTCTCATGCAATTGATAACAGCATTCATCAAAACAAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTMAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACACGGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGCCAAGGCCTTCGAATTTTAACATCGGAAAACTTTACCGGCGGCTTGGCCAAAATAAAAAAGGCCCGATTTCTGGTCAGGCCATTTACAACCCTGTGGGTCCGTTGCAGTATCCATAACAGTGACAAGTTTCGATTAGTTAATTCACAATTCTTTTATTCACATTTTCTCACAAAAAATGTTGAAACAAAAGACAATTTTCAAAGAAAAAGGGGCGAATGGTCAGGGTGTTCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACAGCATTCATCAAAACAAA</pcr_primer_p1>
		<pcr_primer_p2>GCCTAGAAAATTTCGGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>337</pcr_amplicon_size>
		<canonical_amplicon>TAACAGCATTCATCAAAACAAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACACGGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGC</canonical_amplicon>
		<polymorphic_amplicon>TAACAGCATTCATCAAAACAAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTMAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACACGGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37162</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>177397</contig_pos>
        <strand></strand>
        <context>aaaattaggc[A/C]actacgtyaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGC</left_flank>
        <right_flank>ACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTCAAATCCTGGCTAAAAATGTAATCTCAATACTTCTCTTCCCCCTACAACCATTTTGTCAATTCTCCTTTTCCCGTTCCCCGAACATTTTCACTGTATTATCCTTTACAATTAGCTGCTAATCCTTTTTTCAAAACTCATTCATGATTGCTATTATAATTATTATTTGTCGCATCTGATTCCAATTACTATCAATGTTTTAAAAAATTATGTAATCTAACGGAATTTATTTGGGAACGAAATGAAACTCGTTTGAATCTTTATGTCTTTTTGGGAACATTTTTTCCAGGTTTCTCATGCAATTGATAACAGCATTCATCAAAACAAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACACGGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGCCAAGGCCTTCGAATTTTAACATCGGAAAACTTTACCGGCGGCTTGGCCAAAATAAAAAAGGCCCGATTTCTGGTCAGGCCATTTACAACCCTGTGGGTCCGTTGCAGTATCCATAACAGTGACAAGTTTCGATTAGTTAATTCACAATTCTTTTATTCACATTTTCTCACAAAAAATGTTGAAACAAAAGACAATTTTCAAAGAAAAAGGGGCGAATGGTCAGGGTGTTCTTCATCACCGAGTGGTTTCTGTGTGTGTGGTGTGTAGAGAGGAAAATAAACGATGGAAAATATTTATGAAGACAGCAAAATTCTTGGGATCTTTTGAATTTCACAGCTTCAATGTCTCTCGTG</canonical>
            <polymorphic>AAATTTCAAATCCTGGCTAAAAATGTAATCTCAATACTTCTCTTCCCCCTACAACCATTTTGTCAATTCTCCTTTTCCCGTTCCCCGAACATTTTCACTGTATTATCCTTTACAATTAGCTGCTAATCCTTTTTTCAAAACTCATTCATGATTGCTATTATAATTATTATTTGTCGCATCTGATTCCAATTACTATCAATGTTTTAAAAAATTATGTAATCTAACGGAATTTATTTGGGAACGAAATGAAACTCGTTTGAATCTTTATGTCTTTTTGGGAACATTTTTTCCAGGTTTCTCATGCAATTGATAACAGCATTCATCAAAACAAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCMACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACACGGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGCCAAGGCCTTCGAATTTTAACATCGGAAAACTTTACCGGCGGCTTGGCCAAAATAAAAAAGGCCCGATTTCTGGTCAGGCCATTTACAACCCTGTGGGTCCGTTGCAGTATCCATAACAGTGACAAGTTTCGATTAGTTAATTCACAATTCTTTTATTCACATTTTCTCACAAAAAATGTTGAAACAAAAGACAATTTTCAAAGAAAAAGGGGCGAATGGTCAGGGTGTTCTTCATCACCGAGTGGTTTCTGTGTGTGTGGTGTGTAGAGAGGAAAATAAACGATGGAAAATATTTATGAAGACAGCAAAATTCTTGGGATCTTTTGAATTTCACAGCTTCAATGTCTCTCGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACAGCATTCATCAAAACAAA</pcr_primer_p1>
		<pcr_primer_p2>GCCTAGAAAATTTCGGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>337</pcr_amplicon_size>
		<canonical_amplicon>TAACAGCATTCATCAAAACAAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACACGGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGC</canonical_amplicon>
		<polymorphic_amplicon>TAACAGCATTCATCAAAACAAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCMACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACACGGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37163</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>177405</contig_pos>
        <strand></strand>
        <context>gcmactacgt[C/T]aaagtgacct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGT</left_flank>
        <right_flank>AAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCCTGGCTAAAAATGTAATCTCAATACTTCTCTTCCCCCTACAACCATTTTGTCAATTCTCCTTTTCCCGTTCCCCGAACATTTTCACTGTATTATCCTTTACAATTAGCTGCTAATCCTTTTTTCAAAACTCATTCATGATTGCTATTATAATTATTATTTGTCGCATCTGATTCCAATTACTATCAATGTTTTAAAAAATTATGTAATCTAACGGAATTTATTTGGGAACGAAATGAAACTCGTTTGAATCTTTATGTCTTTTTGGGAACATTTTTTCCAGGTTTCTCATGCAATTGATAACAGCATTCATCAAAACAAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACACGGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGCCAAGGCCTTCGAATTTTAACATCGGAAAACTTTACCGGCGGCTTGGCCAAAATAAAAAAGGCCCGATTTCTGGTCAGGCCATTTACAACCCTGTGGGTCCGTTGCAGTATCCATAACAGTGACAAGTTTCGATTAGTTAATTCACAATTCTTTTATTCACATTTTCTCACAAAAAATGTTGAAACAAAAGACAATTTTCAAAGAAAAAGGGGCGAATGGTCAGGGTGTTCTTCATCACCGAGTGGTTTCTGTGTGTGTGGTGTGTAGAGAGGAAAATAAACGATGGAAAATATTTATGAAGACAGCAAAATTCTTGGGATCTTTTGAATTTCACAGCTTCAATGTCTCTCGTGCTCTCTCG</canonical>
            <polymorphic>AATCCTGGCTAAAAATGTAATCTCAATACTTCTCTTCCCCCTACAACCATTTTGTCAATTCTCCTTTTCCCGTTCCCCGAACATTTTCACTGTATTATCCTTTACAATTAGCTGCTAATCCTTTTTTCAAAACTCATTCATGATTGCTATTATAATTATTATTTGTCGCATCTGATTCCAATTACTATCAATGTTTTAAAAAATTATGTAATCTAACGGAATTTATTTGGGAACGAAATGAAACTCGTTTGAATCTTTATGTCTTTTTGGGAACATTTTTTCCAGGTTTCTCATGCAATTGATAACAGCATTCATCAAAACAAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGTYAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACACGGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGCCAAGGCCTTCGAATTTTAACATCGGAAAACTTTACCGGCGGCTTGGCCAAAATAAAAAAGGCCCGATTTCTGGTCAGGCCATTTACAACCCTGTGGGTCCGTTGCAGTATCCATAACAGTGACAAGTTTCGATTAGTTAATTCACAATTCTTTTATTCACATTTTCTCACAAAAAATGTTGAAACAAAAGACAATTTTCAAAGAAAAAGGGGCGAATGGTCAGGGTGTTCTTCATCACCGAGTGGTTTCTGTGTGTGTGGTGTGTAGAGAGGAAAATAAACGATGGAAAATATTTATGAAGACAGCAAAATTCTTGGGATCTTTTGAATTTCACAGCTTCAATGTCTCTCGTGCTCTCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACAGCATTCATCAAAACAAA</pcr_primer_p1>
		<pcr_primer_p2>GCCTAGAAAATTTCGGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>337</pcr_amplicon_size>
		<canonical_amplicon>TAACAGCATTCATCAAAACAAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACACGGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGC</canonical_amplicon>
		<polymorphic_amplicon>TAACAGCATTCATCAAAACAAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGTYAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACACGGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37164</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>177495</contig_pos>
        <strand>+</strand>
        <context>gtttggccac[A/G]SKKTTCTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCAC</left_flank>
        <right_flank>CGGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTATTATCCTTTACAATTAGCTGCTAATCCTTTTTTCAAAACTCATTCATGATTGCTATTATAATTATTATTTGTCGCATCTGATTCCAATTACTATCAATGTTTTAAAAAATTATGTAATCTAACGGAATTTATTTGGGAACGAAATGAAACTCGTTTGAATCTTTATGTCTTTTTGGGAACATTTTTTCCAGGTTTCTCATGCAATTGATAACAGCATTCATCAAAACAAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACACGGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGCCAAGGCCTTCGAATTTTAACATCGGAAAACTTTACCGGCGGCTTGGCCAAAATAAAAAAGGCCCGATTTCTGGTCAGGCCATTTACAACCCTGTGGGTCCGTTGCAGTATCCATAACAGTGACAAGTTTCGATTAGTTAATTCACAATTCTTTTATTCACATTTTCTCACAAAAAATGTTGAAACAAAAGACAATTTTCAAAGAAAAAGGGGCGAATGGTCAGGGTGTTCTTCATCACCGAGTGGTTTCTGTGTGTGTGGTGTGTAGAGAGGAAAATAAACGATGGAAAATATTTATGAAGACAGCAAAATTCTTGGGATCTTTTGAATTTCACAGCTTCAATGTCTCTCGTGCTCTCTCGTCATTTTGTGTGTGTGAGTGCGTGTGTTCGGAAAAGAGGAATAAAGTGGAAAAAAATTAAAAGATAGAAGCAAACAGCTGGGGGGAAACG</canonical>
            <polymorphic>TGTATTATCCTTTACAATTAGCTGCTAATCCTTTTTTCAAAACTCATTCATGATTGCTATTATAATTATTATTTGTCGCATCTGATTCCAATTACTATCAATGTTTTAAAAAATTATGTAATCTAACGGAATTTATTTGGGAACGAAATGAAACTCGTTTGAATCTTTATGTCTTTTTGGGAACATTTTTTCCAGGTTTCTCATGCAATTGATAACAGCATTCATCAAAACAAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACRCGGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGCCAAGGCCTTCGAATTTTAACATCGGAAAACTTTACCGGCGGCTTGGCCAAAATAAAAAAGGCCCGATTTCTGGTCAGGCCATTTACAACCCTGTGGGTCCGTTGCAGTATCCATAACAGTGACAAGTTTCGATTAGTTAATTCACAATTCTTTTATTCACATTTTCTCACAAAAAATGTTGAAACAAAAGACAATTTTCAAAGAAAAAGGGGCGAATGGTCAGGGTGTTCTTCATCACCGAGTGGTTTCTGTGTGTGTGGTGTGTAGAGAGGAAAATAAACGATGGAAAATATTTATGAAGACAGCAAAATTCTTGGGATCTTTTGAATTTCACAGCTTCAATGTCTCTCGTGCTCTCTCGTCATTTTGTGTGTGTGAGTGCGTGTGTTCGGAAAAGAGGAATAAAGTGGAAAAAAATTAAAAGATAGAAGCAAACAGCTGGGGGGAAACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>464 333 165 38</canonical_bands>
                <polymorphic_bands>464 333 203</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>269 144 69 67 58 51 44 42 36 31 26 23 22 20 18 15 10 10 9 7 4 4 3 2 2 2 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>269 146 69 67 58 51 44 42 36 31 26 23 22 20 18 15 10 10 9 7 4 4 3 2 2 2 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGCATTCATCAAAACAAAT</pcr_primer_p1>
		<pcr_primer_p2>GGTAAAGTTTTCCGATGTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>371</pcr_amplicon_size>
		<canonical_amplicon>ACAGCATTCATCAAAACAAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACACGGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGCCAAGGCCTTCGAATTTTAACATCGGAAAACTTTACC</canonical_amplicon>
		<polymorphic_amplicon>ACAGCATTCATCAAAACAAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACRCGGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGCCAAGGCCTTCGAATTTTAACATCGGAAAACTTTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37165</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>177496</contig_pos>
        <strand>+</strand>
        <context>tttggccacR[C/G]KKTTCTTTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACA</left_flank>
        <right_flank>GGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATTATCCTTTACAATTAGCTGCTAATCCTTTTTTCAAAACTCATTCATGATTGCTATTATAATTATTATTTGTCGCATCTGATTCCAATTACTATCAATGTTTTAAAAAATTATGTAATCTAACGGAATTTATTTGGGAACGAAATGAAACTCGTTTGAATCTTTATGTCTTTTTGGGAACATTTTTTCCAGGTTTCTCATGCAATTGATAACAGCATTCATCAAAACAAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACACGGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGCCAAGGCCTTCGAATTTTAACATCGGAAAACTTTACCGGCGGCTTGGCCAAAATAAAAAAGGCCCGATTTCTGGTCAGGCCATTTACAACCCTGTGGGTCCGTTGCAGTATCCATAACAGTGACAAGTTTCGATTAGTTAATTCACAATTCTTTTATTCACATTTTCTCACAAAAAATGTTGAAACAAAAGACAATTTTCAAAGAAAAAGGGGCGAATGGTCAGGGTGTTCTTCATCACCGAGTGGTTTCTGTGTGTGTGGTGTGTAGAGAGGAAAATAAACGATGGAAAATATTTATGAAGACAGCAAAATTCTTGGGATCTTTTGAATTTCACAGCTTCAATGTCTCTCGTGCTCTCTCGTCATTTTGTGTGTGTGAGTGCGTGTGTTCGGAAAAGAGGAATAAAGTGGAAAAAAATTAAAAGATAGAAGCAAACAGCTGGGGGGAAACGG</canonical>
            <polymorphic>GTATTATCCTTTACAATTAGCTGCTAATCCTTTTTTCAAAACTCATTCATGATTGCTATTATAATTATTATTTGTCGCATCTGATTCCAATTACTATCAATGTTTTAAAAAATTATGTAATCTAACGGAATTTATTTGGGAACGAAATGAAACTCGTTTGAATCTTTATGTCTTTTTGGGAACATTTTTTCCAGGTTTCTCATGCAATTGATAACAGCATTCATCAAAACAAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACASGGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGCCAAGGCCTTCGAATTTTAACATCGGAAAACTTTACCGGCGGCTTGGCCAAAATAAAAAAGGCCCGATTTCTGGTCAGGCCATTTACAACCCTGTGGGTCCGTTGCAGTATCCATAACAGTGACAAGTTTCGATTAGTTAATTCACAATTCTTTTATTCACATTTTCTCACAAAAAATGTTGAAACAAAAGACAATTTTCAAAGAAAAAGGGGCGAATGGTCAGGGTGTTCTTCATCACCGAGTGGTTTCTGTGTGTGTGGTGTGTAGAGAGGAAAATAAACGATGGAAAATATTTATGAAGACAGCAAAATTCTTGGGATCTTTTGAATTTCACAGCTTCAATGTCTCTCGTGCTCTCTCGTCATTTTGTGTGTGTGAGTGCGTGTGTTCGGAAAAGAGGAATAAAGTGGAAAAAAATTAAAAGATAGAAGCAAACAGCTGGGGGGAAACGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>463 334 165 38</canonical_bands>
                <polymorphic_bands>463 334 203</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>268 144 69 67 58 51 44 43 36 31 26 23 22 20 18 15 10 10 9 7 4 4 3 2 2 2 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>268 146 69 67 58 51 44 43 36 31 26 23 22 20 18 15 10 10 9 7 4 4 3 2 2 2 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGCATTCATCAAAACAAAT</pcr_primer_p1>
		<pcr_primer_p2>GGTAAAGTTTTCCGATGTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>371</pcr_amplicon_size>
		<canonical_amplicon>ACAGCATTCATCAAAACAAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACACGGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGCCAAGGCCTTCGAATTTTAACATCGGAAAACTTTACC</canonical_amplicon>
		<polymorphic_amplicon>ACAGCATTCATCAAAACAAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACASGGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGCCAAGGCCTTCGAATTTTAACATCGGAAAACTTTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37166</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>177497</contig_pos>
        <strand>+</strand>
        <context>ttggccacRS[G/T]KTTCTTTCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACAC</left_flank>
        <right_flank>GTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGCCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTATCCTTTACAATTAGCTGCTAATCCTTTTTTCAAAACTCATTCATGATTGCTATTATAATTATTATTTGTCGCATCTGATTCCAATTACTATCAATGTTTTAAAAAATTATGTAATCTAACGGAATTTATTTGGGAACGAAATGAAACTCGTTTGAATCTTTATGTCTTTTTGGGAACATTTTTTCCAGGTTTCTCATGCAATTGATAACAGCATTCATCAAAACAAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACACGGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGCCAAGGCCTTCGAATTTTAACATCGGAAAACTTTACCGGCGGCTTGGCCAAAATAAAAAAGGCCCGATTTCTGGTCAGGCCATTTACAACCCTGTGGGTCCGTTGCAGTATCCATAACAGTGACAAGTTTCGATTAGTTAATTCACAATTCTTTTATTCACATTTTCTCACAAAAAATGTTGAAACAAAAGACAATTTTCAAAGAAAAAGGGGCGAATGGTCAGGGTGTTCTTCATCACCGAGTGGTTTCTGTGTGTGTGGTGTGTAGAGAGGAAAATAAACGATGGAAAATATTTATGAAGACAGCAAAATTCTTGGGATCTTTTGAATTTCACAGCTTCAATGTCTCTCGTGCTCTCTCGTCATTTTGTGTGTGTGAGTGCGTGTGTTCGGAAAAGAGGAATAAAGTGGAAAAAAATTAAAAGATAGAAGCAAACAGCTGGGGGGAAACGGA</canonical>
            <polymorphic>TATTATCCTTTACAATTAGCTGCTAATCCTTTTTTCAAAACTCATTCATGATTGCTATTATAATTATTATTTGTCGCATCTGATTCCAATTACTATCAATGTTTTAAAAAATTATGTAATCTAACGGAATTTATTTGGGAACGAAATGAAACTCGTTTGAATCTTTATGTCTTTTTGGGAACATTTTTTCCAGGTTTCTCATGCAATTGATAACAGCATTCATCAAAACAAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACACKGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGCCAAGGCCTTCGAATTTTAACATCGGAAAACTTTACCGGCGGCTTGGCCAAAATAAAAAAGGCCCGATTTCTGGTCAGGCCATTTACAACCCTGTGGGTCCGTTGCAGTATCCATAACAGTGACAAGTTTCGATTAGTTAATTCACAATTCTTTTATTCACATTTTCTCACAAAAAATGTTGAAACAAAAGACAATTTTCAAAGAAAAAGGGGCGAATGGTCAGGGTGTTCTTCATCACCGAGTGGTTTCTGTGTGTGTGGTGTGTAGAGAGGAAAATAAACGATGGAAAATATTTATGAAGACAGCAAAATTCTTGGGATCTTTTGAATTTCACAGCTTCAATGTCTCTCGTGCTCTCTCGTCATTTTGTGTGTGTGAGTGCGTGTGTTCGGAAAAGAGGAATAAAGTGGAAAAAAATTAAAAGATAGAAGCAAACAGCTGGGGGGAAACGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGCATTCATCAAAACAAAT</pcr_primer_p1>
		<pcr_primer_p2>GGTAAAGTTTTCCGATGTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>371</pcr_amplicon_size>
		<canonical_amplicon>ACAGCATTCATCAAAACAAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACACGGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGCCAAGGCCTTCGAATTTTAACATCGGAAAACTTTACC</canonical_amplicon>
		<polymorphic_amplicon>ACAGCATTCATCAAAACAAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACACKGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGCCAAGGCCTTCGAATTTTAACATCGGAAAACTTTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37167</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>177498</contig_pos>
        <strand>+</strand>
        <context>tggccacRSK[G/T]TTCTTTCAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACACG</left_flank>
        <right_flank>TTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGCCAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTATCCTTTACAATTAGCTGCTAATCCTTTTTTCAAAACTCATTCATGATTGCTATTATAATTATTATTTGTCGCATCTGATTCCAATTACTATCAATGTTTTAAAAAATTATGTAATCTAACGGAATTTATTTGGGAACGAAATGAAACTCGTTTGAATCTTTATGTCTTTTTGGGAACATTTTTTCCAGGTTTCTCATGCAATTGATAACAGCATTCATCAAAACAAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACACGGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGCCAAGGCCTTCGAATTTTAACATCGGAAAACTTTACCGGCGGCTTGGCCAAAATAAAAAAGGCCCGATTTCTGGTCAGGCCATTTACAACCCTGTGGGTCCGTTGCAGTATCCATAACAGTGACAAGTTTCGATTAGTTAATTCACAATTCTTTTATTCACATTTTCTCACAAAAAATGTTGAAACAAAAGACAATTTTCAAAGAAAAAGGGGCGAATGGTCAGGGTGTTCTTCATCACCGAGTGGTTTCTGTGTGTGTGGTGTGTAGAGAGGAAAATAAACGATGGAAAATATTTATGAAGACAGCAAAATTCTTGGGATCTTTTGAATTTCACAGCTTCAATGTCTCTCGTGCTCTCTCGTCATTTTGTGTGTGTGAGTGCGTGTGTTCGGAAAAGAGGAATAAAGTGGAAAAAAATTAAAAGATAGAAGCAAACAGCTGGGGGGAAACGGAA</canonical>
            <polymorphic>ATTATCCTTTACAATTAGCTGCTAATCCTTTTTTCAAAACTCATTCATGATTGCTATTATAATTATTATTTGTCGCATCTGATTCCAATTACTATCAATGTTTTAAAAAATTATGTAATCTAACGGAATTTATTTGGGAACGAAATGAAACTCGTTTGAATCTTTATGTCTTTTTGGGAACATTTTTTCCAGGTTTCTCATGCAATTGATAACAGCATTCATCAAAACAAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACACGKTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGCCAAGGCCTTCGAATTTTAACATCGGAAAACTTTACCGGCGGCTTGGCCAAAATAAAAAAGGCCCGATTTCTGGTCAGGCCATTTACAACCCTGTGGGTCCGTTGCAGTATCCATAACAGTGACAAGTTTCGATTAGTTAATTCACAATTCTTTTATTCACATTTTCTCACAAAAAATGTTGAAACAAAAGACAATTTTCAAAGAAAAAGGGGCGAATGGTCAGGGTGTTCTTCATCACCGAGTGGTTTCTGTGTGTGTGGTGTGTAGAGAGGAAAATAAACGATGGAAAATATTTATGAAGACAGCAAAATTCTTGGGATCTTTTGAATTTCACAGCTTCAATGTCTCTCGTGCTCTCTCGTCATTTTGTGTGTGTGAGTGCGTGTGTTCGGAAAAGAGGAATAAAGTGGAAAAAAATTAAAAGATAGAAGCAAACAGCTGGGGGGAAACGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>461 336 165 38</canonical_bands>
                <polymorphic_bands>461 336 203</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGCATTCATCAAAACAAAT</pcr_primer_p1>
		<pcr_primer_p2>GGTAAAGTTTTCCGATGTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>371</pcr_amplicon_size>
		<canonical_amplicon>ACAGCATTCATCAAAACAAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACACGGTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGCCAAGGCCTTCGAATTTTAACATCGGAAAACTTTACC</canonical_amplicon>
		<polymorphic_amplicon>ACAGCATTCATCAAAACAAATGGCCTAAACTTTTTTTAAGCCAAAAAAGTTGGTGGCCTAGAAAACTCAACTTGCAAAAGTTAGGCCGCCACGTCAAAATGGCCTAGAAAATGGACCATGGTCATATTAGGTCATTTCCAGGTCATTTTAACATGGTGGCCTAGAAAATTCCTTGCAAAAATTAGGCAACTACGTCAAAGTGACCTAAATAACAAACCATGAGCATGTCATTCCTGGAACATCAGCTACGGTGGCCTAGAAAAATCATTGAGAAAGTTTGGCCACACGKTTCTTTCAATTTTCTCAAAAAATTCGGAAACCGAAATTTTCTAGGCCAAGGCCTTCGAATTTTAACATCGGAAAACTTTACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37168</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>189226</contig_pos>
        <strand>+</strand>
        <context>AATATTGCAG[A/G]AATTACCTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGAGCTGAAAATATATCTGGATTGTAAATATCAGTTGCAATATTGCAG</left_flank>
        <right_flank>AATTACCTGTCTGGAAATCTGCATCAAACTTTGTACAATTCGATGGATCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAATAGGAGGGCGCCCAAGCTGTCAATTTTCTTCTGGACTTCTTTGCGAGATGTCAAAATTGTCAACTAATAATATATGTTTGATATTATGATAAACAATTTATCAGTTGACAACTTTTTAATATCTTTGTAGGAACCGAGATAAATTGGCTCAAAGTTAAAAGTGCCGGAGCCCTACTAATAGAGGGTTTACGATAGGTTTTATAATATGAATTCCTATGAAAAACAATGGTTTTGAAATTGATGAGAAGGTTTTCTGTTAACATTTGTTTTCTTGAACCACTCTCAAACTAAAATAGTCTTACAGCAAAAATCCAGTTATCCGGTTCTGTTGATATCGTGGAGTACTCAAAAGCGTATGCAAATGCGGATGGTTGAGGCTCGATGGATACTCGAATCATATGAGCATCAACGTATTCTGATTTCGTTTTTGGTATAATTGTGGATATTCGAGCTGAAAATATATCTGGATTGTAAATATCAGTTGCAATATTGCAGAAATTACCTGTCTGGAAATCTGCATCAAACTTTGTACAATTCGATGGATCTCGGGAAACTGGACAGTTACATGTGGACGCAGAAGGCTGGAAATAGTGCTAGATGTCAATGTTGTCTGAACGATGAAGAGTTGTGTAGAGGCCACACCCAGTTATTATTTCTCCATTCAACCAAAAAATTCTTTGCCAAAATTTTCCGAATAAACAGATCGAGGAAAAAGGTAAACGAAAAATTGTCCAAGTATAGATGACCCGATAATTCCTCTCTCCCACCATTTTAAATTTTTTACGGACTGCAAAAAATAAGGAAACCCACTTACCGTTCCAGAATGCATACACACAGCATAACATTCCAGAGAACACTTGGTTTTCAAGTGTGGTTGTGCAATTGATGGCATAATGAGAAAAACGAAAACAATGAACATAATCGGATTTTTGAAAATGATATCATTGGATTTAGTTATCATCTCTGAAAGTATAAAAATCGTGTCTAAAAAGGGAG</canonical>
            <polymorphic>GTAATAGGAGGGCGCCCAAGCTGTCAATTTTCTTCTGGACTTCTTTGCGAGATGTCAAAATTGTCAACTAATAATATATGTTTGATATTATGATAAACAATTTATCAGTTGACAACTTTTTAATATCTTTGTAGGAACCGAGATAAATTGGCTCAAAGTTAAAAGTGCCGGAGCCCTACTAATAGAGGGTTTACGATAGGTTTTATAATATGAATTCCTATGAAAAACAATGGTTTTGAAATTGATGAGAAGGTTTTCTGTTAACATTTGTTTTCTTGAACCACTCTCAAACTAAAATAGTCTTACAGCAAAAATCCAGTTATCCGGTTCTGTTGATATCGTGGAGTACTCAAAAGCGTATGCAAATGCGGATGGTTGAGGCTCGATGGATACTCGAATCATATGAGCATCAACGTATTCTGATTTCGTTTTTGGTATAATTGTGGATATTCGAGCTGAAAATATATCTGGATTGTAAATATCAGTTGCAATATTGCAGRAATTACCTGTCTGGAAATCTGCATCAAACTTTGTACAATTCGATGGATCTCGGGAAACTGGACAGTTACATGTGGACGCAGAAGGCTGGAAATAGTGCTAGATGTCAATGTTGTCTGAACGATGAAGAGTTGTGTAGAGGCCACACCCAGTTATTATTTCTCCATTCAACCAAAAAATTCTTTGCCAAAATTTTCCGAATAAACAGATCGAGGAAAAAGGTAAACGAAAAATTGTCCAAGTATAGATGACCCGATAATTCCTCTCTCCCACCATTTTAAATTTTTTACGGACTGCAAAAAATAAGGAAACCCACTTACCGTTCCAGAATGCATACACACAGCATAACATTCCAGAGAACACTTGGTTTTCAAGTGTGGTTGTGCAATTGATGGCATAATGAGAAAAACGAAAACAATGAACATAATCGGATTTTTGAAAATGATATCATTGGATTTAGTTATCATCTCTGAAAGTATAAAAATCGTGTCTAAAAAGGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCGTTTTTGGTATAATTGTG</pcr_primer_p1>
		<pcr_primer_p2>TGGTTGAATGGAGAAATAATAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTCGTTTTTGGTATAATTGTGGATATTCGAGCTGAAAATATATCTGGATTGTAAATATCAGTTGCAATATTGCAGAAATTACCTGTCTGGAAATCTGCATCAAACTTTGTACAATTCGATGGATCTCGGGAAACTGGACAGTTACATGTGGACGCAGAAGGCTGGAAATAGTGCTAGATGTCAATGTTGTCTGAACGATGAAGAGTTGTGTAGAGGCCACACCCAGTTATTATTTCTCCATTCAACCA</canonical_amplicon>
		<polymorphic_amplicon>ATTTCGTTTTTGGTATAATTGTGGATATTCGAGCTGAAAATATATCTGGATTGTAAATATCAGTTGCAATATTGCAGRAATTACCTGTCTGGAAATCTGCATCAAACTTTGTACAATTCGATGGATCTCGGGAAACTGGACAGTTACATGTGGACGCAGAAGGCTGGAAATAGTGCTAGATGTCAATGTTGTCTGAACGATGAAGAGTTGTGTAGAGGCCACACCCAGTTATTATTTCTCCATTCAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37169</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>189242</contig_pos>
        <strand>+</strand>
        <context>CCTGTCTGGA[A/G]ATCTKCATCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCTGGATTGTAAATATCAGTTGCAATATTGCAGAAATTACCTGTCTGGA</left_flank>
        <right_flank>ATCTGCATCAAACTTTGTACAATTCGATGGATCTCGGGAAACTGGACAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGCTGTCAATTTTCTTCTGGACTTCTTTGCGAGATGTCAAAATTGTCAACTAATAATATATGTTTGATATTATGATAAACAATTTATCAGTTGACAACTTTTTAATATCTTTGTAGGAACCGAGATAAATTGGCTCAAAGTTAAAAGTGCCGGAGCCCTACTAATAGAGGGTTTACGATAGGTTTTATAATATGAATTCCTATGAAAAACAATGGTTTTGAAATTGATGAGAAGGTTTTCTGTTAACATTTGTTTTCTTGAACCACTCTCAAACTAAAATAGTCTTACAGCAAAAATCCAGTTATCCGGTTCTGTTGATATCGTGGAGTACTCAAAAGCGTATGCAAATGCGGATGGTTGAGGCTCGATGGATACTCGAATCATATGAGCATCAACGTATTCTGATTTCGTTTTTGGTATAATTGTGGATATTCGAGCTGAAAATATATCTGGATTGTAAATATCAGTTGCAATATTGCAGAAATTACCTGTCTGGAAATCTGCATCAAACTTTGTACAATTCGATGGATCTCGGGAAACTGGACAGTTACATGTGGACGCAGAAGGCTGGAAATAGTGCTAGATGTCAATGTTGTCTGAACGATGAAGAGTTGTGTAGAGGCCACACCCAGTTATTATTTCTCCATTCAACCAAAAAATTCTTTGCCAAAATTTTCCGAATAAACAGATCGAGGAAAAAGGTAAACGAAAAATTGTCCAAGTATAGATGACCCGATAATTCCTCTCTCCCACCATTTTAAATTTTTTACGGACTGCAAAAAATAAGGAAACCCACTTACCGTTCCAGAATGCATACACACAGCATAACATTCCAGAGAACACTTGGTTTTCAAGTGTGGTTGTGCAATTGATGGCATAATGAGAAAAACGAAAACAATGAACATAATCGGATTTTTGAAAATGATATCATTGGATTTAGTTATCATCTCTGAAAGTATAAAAATCGTGTCTAAAAAGGGAGACTTGTTTAAAATTAA</canonical>
            <polymorphic>CAAGCTGTCAATTTTCTTCTGGACTTCTTTGCGAGATGTCAAAATTGTCAACTAATAATATATGTTTGATATTATGATAAACAATTTATCAGTTGACAACTTTTTAATATCTTTGTAGGAACCGAGATAAATTGGCTCAAAGTTAAAAGTGCCGGAGCCCTACTAATAGAGGGTTTACGATAGGTTTTATAATATGAATTCCTATGAAAAACAATGGTTTTGAAATTGATGAGAAGGTTTTCTGTTAACATTTGTTTTCTTGAACCACTCTCAAACTAAAATAGTCTTACAGCAAAAATCCAGTTATCCGGTTCTGTTGATATCGTGGAGTACTCAAAAGCGTATGCAAATGCGGATGGTTGAGGCTCGATGGATACTCGAATCATATGAGCATCAACGTATTCTGATTTCGTTTTTGGTATAATTGTGGATATTCGAGCTGAAAATATATCTGGATTGTAAATATCAGTTGCAATATTGCAGAAATTACCTGTCTGGARATCTGCATCAAACTTTGTACAATTCGATGGATCTCGGGAAACTGGACAGTTACATGTGGACGCAGAAGGCTGGAAATAGTGCTAGATGTCAATGTTGTCTGAACGATGAAGAGTTGTGTAGAGGCCACACCCAGTTATTATTTCTCCATTCAACCAAAAAATTCTTTGCCAAAATTTTCCGAATAAACAGATCGAGGAAAAAGGTAAACGAAAAATTGTCCAAGTATAGATGACCCGATAATTCCTCTCTCCCACCATTTTAAATTTTTTACGGACTGCAAAAAATAAGGAAACCCACTTACCGTTCCAGAATGCATACACACAGCATAACATTCCAGAGAACACTTGGTTTTCAAGTGTGGTTGTGCAATTGATGGCATAATGAGAAAAACGAAAACAATGAACATAATCGGATTTTTGAAAATGATATCATTGGATTTAGTTATCATCTCTGAAAGTATAAAAATCGTGTCTAAAAAGGGAGACTTGTTTAAAATTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCGTTTTTGGTATAATTGTG</pcr_primer_p1>
		<pcr_primer_p2>TGGTTGAATGGAGAAATAATAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTCGTTTTTGGTATAATTGTGGATATTCGAGCTGAAAATATATCTGGATTGTAAATATCAGTTGCAATATTGCAGAAATTACCTGTCTGGAAATCTGCATCAAACTTTGTACAATTCGATGGATCTCGGGAAACTGGACAGTTACATGTGGACGCAGAAGGCTGGAAATAGTGCTAGATGTCAATGTTGTCTGAACGATGAAGAGTTGTGTAGAGGCCACACCCAGTTATTATTTCTCCATTCAACCA</canonical_amplicon>
		<polymorphic_amplicon>ATTTCGTTTTTGGTATAATTGTGGATATTCGAGCTGAAAATATATCTGGATTGTAAATATCAGTTGCAATATTGCAGAAATTACCTGTCTGGARATCTGCATCAAACTTTGTACAATTCGATGGATCTCGGGAAACTGGACAGTTACATGTGGACGCAGAAGGCTGGAAATAGTGCTAGATGTCAATGTTGTCTGAACGATGAAGAGTTGTGTAGAGGCCACACCCAGTTATTATTTCTCCATTCAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37170</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>189247</contig_pos>
        <strand>+</strand>
        <context>CTGGARATCT[G/T]CATCAAACTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATTGTAAATATCAGTTGCAATATTGCAGAAATTACCTGTCTGGAAATCT</left_flank>
        <right_flank>CATCAAACTTTGTACAATTCGATGGATCTCGGGAAACTGGACAGTTACAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTCAATTTTCTTCTGGACTTCTTTGCGAGATGTCAAAATTGTCAACTAATAATATATGTTTGATATTATGATAAACAATTTATCAGTTGACAACTTTTTAATATCTTTGTAGGAACCGAGATAAATTGGCTCAAAGTTAAAAGTGCCGGAGCCCTACTAATAGAGGGTTTACGATAGGTTTTATAATATGAATTCCTATGAAAAACAATGGTTTTGAAATTGATGAGAAGGTTTTCTGTTAACATTTGTTTTCTTGAACCACTCTCAAACTAAAATAGTCTTACAGCAAAAATCCAGTTATCCGGTTCTGTTGATATCGTGGAGTACTCAAAAGCGTATGCAAATGCGGATGGTTGAGGCTCGATGGATACTCGAATCATATGAGCATCAACGTATTCTGATTTCGTTTTTGGTATAATTGTGGATATTCGAGCTGAAAATATATCTGGATTGTAAATATCAGTTGCAATATTGCAGAAATTACCTGTCTGGAAATCTGCATCAAACTTTGTACAATTCGATGGATCTCGGGAAACTGGACAGTTACATGTGGACGCAGAAGGCTGGAAATAGTGCTAGATGTCAATGTTGTCTGAACGATGAAGAGTTGTGTAGAGGCCACACCCAGTTATTATTTCTCCATTCAACCAAAAAATTCTTTGCCAAAATTTTCCGAATAAACAGATCGAGGAAAAAGGTAAACGAAAAATTGTCCAAGTATAGATGACCCGATAATTCCTCTCTCCCACCATTTTAAATTTTTTACGGACTGCAAAAAATAAGGAAACCCACTTACCGTTCCAGAATGCATACACACAGCATAACATTCCAGAGAACACTTGGTTTTCAAGTGTGGTTGTGCAATTGATGGCATAATGAGAAAAACGAAAACAATGAACATAATCGGATTTTTGAAAATGATATCATTGGATTTAGTTATCATCTCTGAAAGTATAAAAATCGTGTCTAAAAAGGGAGACTTGTTTAAAATTAACAACA</canonical>
            <polymorphic>TGTCAATTTTCTTCTGGACTTCTTTGCGAGATGTCAAAATTGTCAACTAATAATATATGTTTGATATTATGATAAACAATTTATCAGTTGACAACTTTTTAATATCTTTGTAGGAACCGAGATAAATTGGCTCAAAGTTAAAAGTGCCGGAGCCCTACTAATAGAGGGTTTACGATAGGTTTTATAATATGAATTCCTATGAAAAACAATGGTTTTGAAATTGATGAGAAGGTTTTCTGTTAACATTTGTTTTCTTGAACCACTCTCAAACTAAAATAGTCTTACAGCAAAAATCCAGTTATCCGGTTCTGTTGATATCGTGGAGTACTCAAAAGCGTATGCAAATGCGGATGGTTGAGGCTCGATGGATACTCGAATCATATGAGCATCAACGTATTCTGATTTCGTTTTTGGTATAATTGTGGATATTCGAGCTGAAAATATATCTGGATTGTAAATATCAGTTGCAATATTGCAGAAATTACCTGTCTGGAAATCTKCATCAAACTTTGTACAATTCGATGGATCTCGGGAAACTGGACAGTTACATGTGGACGCAGAAGGCTGGAAATAGTGCTAGATGTCAATGTTGTCTGAACGATGAAGAGTTGTGTAGAGGCCACACCCAGTTATTATTTCTCCATTCAACCAAAAAATTCTTTGCCAAAATTTTCCGAATAAACAGATCGAGGAAAAAGGTAAACGAAAAATTGTCCAAGTATAGATGACCCGATAATTCCTCTCTCCCACCATTTTAAATTTTTTACGGACTGCAAAAAATAAGGAAACCCACTTACCGTTCCAGAATGCATACACACAGCATAACATTCCAGAGAACACTTGGTTTTCAAGTGTGGTTGTGCAATTGATGGCATAATGAGAAAAACGAAAACAATGAACATAATCGGATTTTTGAAAATGATATCATTGGATTTAGTTATCATCTCTGAAAGTATAAAAATCGTGTCTAAAAAGGGAGACTTGTTTAAAATTAACAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>341 273 138 126 53 36 25 8</canonical_bands>
                <polymorphic_bands>341 298 138 126 53 36 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCGTTTTTGGTATAATTGTG</pcr_primer_p1>
		<pcr_primer_p2>TGGTTGAATGGAGAAATAATAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTCGTTTTTGGTATAATTGTGGATATTCGAGCTGAAAATATATCTGGATTGTAAATATCAGTTGCAATATTGCAGAAATTACCTGTCTGGAAATCTGCATCAAACTTTGTACAATTCGATGGATCTCGGGAAACTGGACAGTTACATGTGGACGCAGAAGGCTGGAAATAGTGCTAGATGTCAATGTTGTCTGAACGATGAAGAGTTGTGTAGAGGCCACACCCAGTTATTATTTCTCCATTCAACCA</canonical_amplicon>
		<polymorphic_amplicon>ATTTCGTTTTTGGTATAATTGTGGATATTCGAGCTGAAAATATATCTGGATTGTAAATATCAGTTGCAATATTGCAGAAATTACCTGTCTGGAAATCTKCATCAAACTTTGTACAATTCGATGGATCTCGGGAAACTGGACAGTTACATGTGGACGCAGAAGGCTGGAAATAGTGCTAGATGTCAATGTTGTCTGAACGATGAAGAGTTGTGTAGAGGCCACACCCAGTTATTATTTCTCCATTCAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37171</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>240462</contig_pos>
        <strand></strand>
        <context>ttgatcaaat[A/T]atttgaaact</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGATAAAGCAACTTTGACTAGCGATAACTCATCTCAAAGTTGATCAAAT</left_flank>
        <right_flank>ATTTGAAACTTGGTCAGTTTAATGATGGATTATTTGAATTTTTGTAATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCACATCTGCTTGTACTTTTTTTTCTTGGGGTTCTTTCATATTTCCATGTGTTCGTCGGAAAATTTCGTTGAAAGAATTTCTGGAGAAAATGAATAAGCAAAAGAAAAAAAACACAAGTAAATGTTCAATAGATTGTGCACTCAAATTTGATGAGGTATTTAAAGAGAAGAATGAAGTTTGACCGATGGTAACCAATTACCCAATTATTTGTAATACCCAATTTTTGATATTGACAGGGTGGCGCTGATAAAACCGGGTATATCTTCAGACATAAGTACCTTGGAATCACGAAAATTGGTTGAAATTTGATTTTAGGTTCGATTCAAAGCTACTGAAATTTTTAAAACGATTCCTCCAGTATAGGTATTGTTATGATTGTCCAAGAATGAAATGTTTCTTGCACGCCGATTTTCATAAGATAAAGCAACTTTGACTAGCGATAACTCATCTCAAAGTTGATCAAATAATTTGAAACTTGGTCAGTTTAATGATGGATTATTTGAATTTTTGTAATTTGAATTTGAGCTCAGTACAATGTTTCACTCCTTTTGTGCTAGCACAAACTTTAGTCCAGGTAATTATGAGCCATCCTGCAGTTACCTAAAAAGCTTTCAGAAAATCATAAATAAAAATTTTCATTTTTAGATCACTCCGAAATCCTTTCATATCTCCTGCAAGCTATTTTTGTTTCCAAAATGTCAGCTTCTCCTTGTTTTTAGACAAAATGAACACTCGTTGGTTCCCTAAATGGTCATCTGCCAGCATCTCGAATTGCAGTTGTTTGTTTATCTCAAAATAAAATTGAACAACGCCTTTCATATCAAGTTTCCAATTTGAAATCATTTTCCAGTTGTACATCAGTTTCCTCATCTTTTCAAACTCTGCTTAGTACGGTAACCCAATATCTTATGGTCACTTTTTTCCGCCAAAAATTTTTTCCTAGCCCCCACTCTTTTTCCCATAATT</canonical>
            <polymorphic>GGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCACATCTGCTTGTACTTTTTTTTCTTGGGGTTCTTTCATATTTCCATGTGTTCGTCGGAAAATTTCGTTGAAAGAATTTCTGGAGAAAATGAATAAGCAAAAGAAAAAAAACACAAGTAAATGTTCAATAGATTGTGCACTCAAATTTGATGAGGTATTTAAAGAGAAGAATGAAGTTTGACCGATGGTAACCAATTACCCAATTATTTGTAATACCCAATTTTTGATATTGACAGGGTGGCGCTGATAAAACCGGGTATATCTTCAGACATAAGTACCTTGGAATCACGAAAATTGGTTGAAATTTGATTTTAGGTTCGATTCAAAGCTACTGAAATTTTTAAAACGATTCCTCCAGTATAGGTATTGTTATGATTGTCCAAGAATGAAATGTTTCTTGCACGCCGATTTTCATAAGATAAAGCAACTTTGACTAGCGATAACTCATCTCAAAGTTGATCAAATWATTTGAAACTTGGTCAGTTTAATGATGGATTATTTGAATTTTTGTAATTTGAATTTGAGCTCAGTACAATGTTTCACTCCTTTTGTGCTAGCACAAACTTTAGTCCAGGTAATTATGAGCCATCCTGCAGTTACCTAAAAAGCTTTCAGAAAATCATAAATAAAAATTTTCATTTTTAGATCACTCCGAAATCCTTTCATATCTCCTGCAAGCTATTTTTGTTTCCAAAATGTCAGCTTCTCCTTGTTTTTAGACAAAATGAACACTCGTTGGTTCCCTAAATGGTCATCTGCCAGCATCTCGAATTGCAGTTGTTTGTTTATCTCAAAATAAAATTGAACAACGCCTTTCATATCAAGTTTCCAATTTGAAATCATTTTCCAGTTGTACATCAGTTTCCTCATCTTTTCAAACTCTGCTTAGTACGGTAACCCAATATCTTATGGTCACTTTTTTCCGCCAAAAATTTTTTCCTAGCCCCCACTCTTTTTCCCATAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>139 130 100 94 74 69 59 54 50 37 33 32 31 30 17 14 10 9 8 6 4</canonical_bands>
                <polymorphic_bands>167 139 100 94 74 69 59 54 50 33 32 31 30 17 14 10 9 8 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACCCAATTTTTGATATTGACA</pcr_primer_p1>
		<pcr_primer_p2>TCTGAAAGCTTTTTAGGTAACTG</pcr_primer_p2>
		<pcr_amplicon_size>404</pcr_amplicon_size>
		<canonical_amplicon>ATACCCAATTTTTGATATTGACAGGGTGGCGCTGATAAAACCGGGTATATCTTCAGACATAAGTACCTTGGAATCACGAAAATTGGTTGAAATTTGATTTTAGGTTCGATTCAAAGCTACTGAAATTTTTAAAACGATTCCTCCAGTATAGGTATTGTTATGATTGTCCAAGAATGAAATGTTTCTTGCACGCCGATTTTCATAAGATAAAGCAACTTTGACTAGCGATAACTCATCTCAAAGTTGATCAAATAATTTGAAACTTGGTCAGTTTAATGATGGATTATTTGAATTTTTGTAATTTGAATTTGAGCTCAGTACAATGTTTCACTCCTTTTGTGCTAGCACAAACTTTAGTCCAGGTAATTATGAGCCATCCTGCAGTTACCTAAAAAGCTTTCAGA</canonical_amplicon>
		<polymorphic_amplicon>ATACCCAATTTTTGATATTGACAGGGTGGCGCTGATAAAACCGGGTATATCTTCAGACATAAGTACCTTGGAATCACGAAAATTGGTTGAAATTTGATTTTAGGTTCGATTCAAAGCTACTGAAATTTTTAAAACGATTCCTCCAGTATAGGTATTGTTATGATTGTCCAAGAATGAAATGTTTCTTGCACGCCGATTTTCATAAGATAAAGCAACTTTGACTAGCGATAACTCATCTCAAAGTTGATCAAATWATTTGAAACTTGGTCAGTTTAATGATGGATTATTTGAATTTTTGTAATTTGAATTTGAGCTCAGTACAATGTTTCACTCCTTTTGTGCTAGCACAAACTTTAGTCCAGGTAATTATGAGCCATCCTGCAGTTACCTAAAAAGCTTTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37172</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>245535</contig_pos>
        <strand>+</strand>
        <context>TTCATTAAAA[G/T]GTGCCCTTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TACGAACCTTATCAAATGTTTAAGAAAAAAAGTGTTTCCCTTCATTAAAA</left_flank>
        <right_flank>GTGCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCT</right_flank>
        <qual_score>143</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATAAATTGGAAGCAATTTTTTGGCTGTGATAAATTTCTACATGTTAACTTTATTTTTTTTTTAGAAATTTATTTTGTTGTCATTAGTATGTATTAAAAGGGCTGGCCCTTCTATTTTTTCCCCATGGTACCTCAGGAGGGCCCTTCAATTAGAGGCGATTCTTCTATTTTTCCGACTTTGTTTTCGCTTCAAAATACGATTTCAAGCAACTTTTAATCTAGTTTTAAGTCAATTTTTGACCAATTTCAGGCCATTCTAAGCACATTGTAAGCCAATTTTAAGCTAATTTTACGCCAATTTTAAGCTAATTTTAAGTTAATTTGAGCCAATTTTAAGCCAGTTTTGAGCGAATTTGGAGCCAAATTTAAGCCTATTTTGAGCTGATTTTCAGCCAAATTCAAGACAATTCATGCCAATTTAGGCCAATTTGAAGGTCATGAAAATCTACGAACCTTATCAAATGTTTAAGAAAAAAAGTGTTTCCCTTCATTAAAAGGTGCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCTTTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTTTTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCATAGCCTATAACGATTTGAGACTAGGTTGAATAAATGAGTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACAATGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTTATTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGATATTCTTGGTATAAGTATATGTCTTCTGATTTTTCATTCCACATTCTTTTTCTTTTTCTGTTTCTCATGTTTCGTTTTTTTTGTTTGAGATCCAATTATGTT</canonical>
            <polymorphic>AAAAATAAATTGGAAGCAATTTTTTGGCTGTGATAAATTTCTACATGTTAACTTTATTTTTTTTTTAGAAATTTATTTTGTTGTCATTAGTATGTATTAAAAGGGCTGGCCCTTCTATTTTTTCCCCATGGTACCTCAGGAGGGCCCTTCAATTAGAGGCGATTCTTCTATTTTTCCGACTTTGTTTTCGCTTCAAAATACGATTTCAAGCAACTTTTAATCTAGTTTTAAGTCAATTTTTGACCAATTTCAGGCCATTCTAAGCACATTGTAAGCCAATTTTAAGCTAATTTTACGCCAATTTTAAGCTAATTTTAAGTTAATTTGAGCCAATTTTAAGCCAGTTTTGAGCGAATTTGGAGCCAAATTTAAGCCTATTTTGAGCTGATTTTCAGCCAAATTCAAGACAATTCATGCCAATTTAGGCCAATTTGAAGGTCATGAAAATCTACGAACCTTATCAAATGTTTAAGAAAAAAAGTGTTTCCCTTCATTAAAAKGTGCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCTTTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTTTTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCATAGCCTATAACGATTTGAGACTAGGTTGAATAAATGAGTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACAATGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTTATTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGATATTCTTGGTATAAGTATATGTCTTCTGATTTTTCATTCCACATTCTTTTTCTTTTTCTGTTTCTCATGTTTCGTTTTTTTTGTTTGAGATCCAATTATGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>500 370 130</canonical_bands>
                <polymorphic_bands>870 130</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>498 217 141 132 12</canonical_bands>
                <polymorphic_bands>639 217 132 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCATGAAAATCTACGAACCTTA</pcr_primer_p1>
		<pcr_primer_p2>TGGAGTACAACAGAGAAGATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCATGAAAATCTACGAACCTTATCAAATGTTTAAGAAAAAAAGTGTTTCCCTTCATTAAAAGGTGCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCTTTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTTTTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCA</canonical_amplicon>
		<polymorphic_amplicon>GTCATGAAAATCTACGAACCTTATCAAATGTTTAAGAAAAAAAGTGTTTCCCTTCATTAAAAKGTGCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCTTTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTTTTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37173</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>245593</contig_pos>
        <strand>+</strand>
        <context>TCTTTTTTCT[C/T]TCCTGGCATA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCT</left_flank>
        <right_flank>TCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTTTTTCAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTTAGAAATTTATTTTGTTGTCATTAGTATGTATTAAAAGGGCTGGCCCTTCTATTTTTTCCCCATGGTACCTCAGGAGGGCCCTTCAATTAGAGGCGATTCTTCTATTTTTCCGACTTTGTTTTCGCTTCAAAATACGATTTCAAGCAACTTTTAATCTAGTTTTAAGTCAATTTTTGACCAATTTCAGGCCATTCTAAGCACATTGTAAGCCAATTTTAAGCTAATTTTACGCCAATTTTAAGCTAATTTTAAGTTAATTTGAGCCAATTTTAAGCCAGTTTTGAGCGAATTTGGAGCCAAATTTAAGCCTATTTTGAGCTGATTTTCAGCCAAATTCAAGACAATTCATGCCAATTTAGGCCAATTTGAAGGTCATGAAAATCTACGAACCTTATCAAATGTTTAAGAAAAAAAGTGTTTCCCTTCATTAAAAGGTGCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCTTTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTTTTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCATAGCCTATAACGATTTGAGACTAGGTTGAATAAATGAGTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACAATGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTTATTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGATATTCTTGGTATAAGTATATGTCTTCTGATTTTTCATTCCACATTCTTTTTCTTTTTCTGTTTCTCATGTTTCGTTTTTTTTGTTTGAGATCCAATTATGTTTGGTGTACTGGAAGGTCCAATAAAAGCTAAATAGAGCAGTTTCATGGGGTGAAAATAA</canonical>
            <polymorphic>TTTTTTTTAGAAATTTATTTTGTTGTCATTAGTATGTATTAAAAGGGCTGGCCCTTCTATTTTTTCCCCATGGTACCTCAGGAGGGCCCTTCAATTAGAGGCGATTCTTCTATTTTTCCGACTTTGTTTTCGCTTCAAAATACGATTTCAAGCAACTTTTAATCTAGTTTTAAGTCAATTTTTGACCAATTTCAGGCCATTCTAAGCACATTGTAAGCCAATTTTAAGCTAATTTTACGCCAATTTTAAGCTAATTTTAAGTTAATTTGAGCCAATTTTAAGCCAGTTTTGAGCGAATTTGGAGCCAAATTTAAGCCTATTTTGAGCTGATTTTCAGCCAAATTCAAGACAATTCATGCCAATTTAGGCCAATTTGAAGGTCATGAAAATCTACGAACCTTATCAAATGTTTAAGAAAAAAAGTGTTTCCCTTCATTAAAAGGTGCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCTYTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTTTTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCATAGCCTATAACGATTTGAGACTAGGTTGAATAAATGAGTGAAATATTCTGAGAAGCTCAACGAACAAGGGATACAATGTTTTCGTTCATCCCACCCTCTCAAATATTCTTCAAAAGACAACCAAAAATTGAGTTATTTGTGTACATGTCTGACGCAAGCAAAGAAAAGTACAATTGCCTGGAAAAGAAGAAGAGGTACAAAAAACGGCTAGATATTCTTGGTATAAGTATATGTCTTCTGATTTTTCATTCCACATTCTTTTTCTTTTTCTGTTTCTCATGTTTCGTTTTTTTTGTTTGAGATCCAATTATGTTTGGTGTACTGGAAGGTCCAATAAAAGCTAAATAGAGCAGTTTCATGGGGTGAAAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCATGAAAATCTACGAACCTTA</pcr_primer_p1>
		<pcr_primer_p2>TGGAGTACAACAGAGAAGATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTCATGAAAATCTACGAACCTTATCAAATGTTTAAGAAAAAAAGTGTTTCCCTTCATTAAAAGGTGCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCTTTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTTTTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCA</canonical_amplicon>
		<polymorphic_amplicon>GTCATGAAAATCTACGAACCTTATCAAATGTTTAAGAAAAAAAGTGTTTCCCTTCATTAAAAGGTGCCCTTCTAATAGAGGCTTTACGGGAAATTCTCACAGATGTCTGTTCTTTTTTCTYTCCTGGCATATCTACGTTTTTTCCACACACTCAGCTCCTTTTTTCAATTTTTCCAAGCGTCTTTAATGATTTTCCGGATGACCGGAACTGAATTTAATTTCAATTTTTATCTTCTCTGTTGTACTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37174</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>301814</contig_pos>
        <strand>+</strand>
        <context>TTTCTTTCTT[A/T]ACCAATAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGGTCTCAATTATTTTATTCCTGTACACGATCTTATTCGTTTTCTTTCTT</left_flank>
        <right_flank>ACCAATAAATTGTCATAAAACACTCATGAATGCTTTATTAACAGATCAAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGATTTAAACTCGGCAAAAAAGTCATATAAATCAGCGTAAAATTTCAGAACGAGGAGCCAGAAGAAGAATGCCTTGCCAACGAAGAGAATCTGACTGACGAAGTGATCGAGCGACTGAAATCGGAAACTGCAATGTACTATCGTCTAGTCAAACAGAGAAACGATCAACAGAAGGAGTTCTGTGGCACCATTGCGGCTCGAGATGTGACAACTGAAGAGTTCAGAAGATGTAGTAATTGGAGAGCCGAGAAGCTTGTCTACTATTACAAATTGATGCGAAAGACCTATTGTCAAGTTGACAACTGGCCCAACTCACCGAAAATCAAGAAAACTTATGGCGAATATCTCAATTTGTTCGGCACTTTCTATGCGTTTCAGAAGTAGAATCATAGTGATTTTTCGCATAGTTTTTGTACATTTTCTTGTTTACTCTCGACCAAAGAAAGCGGGTCTCAATTATTTTATTCCTGTACACGATCTTATTCGTTTTCTTTCTTTACCAATAAATTGTCATAAAACACTCATGAATGCTTTATTAACAGATCAATTCAAAAAAAAAGAATACATTATTCAAGAACTACAGTTCCCTTATTATGCTTCAAACTGACTTCTCTCGGTTTTCTGTAATATTTTGTAAGTTTTGAAAGAAGTCGTCCCGTCCCATATGCTTATCAGCCTCCACTCGTAGCTCGACCAACTGTTGGATGTGTTCGTTGCTCAGCTGTTCCATCTTATCCGAATCCAAATCTTTTCCAATGTTTCCCTTTCGAATGCCGGCACTTGACAATTGTTTAGAGAGCATCATACAGTAGTTCTGGAAACATGTCAGTTAGCTTTTTTCTAGACACAAATCTTACAGTCCATTCTGTGATAAAGGGCTTCACAAACTCTGGCTTCGCATTGATGTGCCTTTTGAACTCATCCTTCACGTATGTGTCGCCCATAAGTCGAGCCGGCGCAGGTAATCCATAGTGGAGTCTGAAAAATTATGTTTTGGA</canonical>
            <polymorphic>TTTGATTTAAACTCGGCAAAAAAGTCATATAAATCAGCGTAAAATTTCAGAACGAGGAGCCAGAAGAAGAATGCCTTGCCAACGAAGAGAATCTGACTGACGAAGTGATCGAGCGACTGAAATCGGAAACTGCAATGTACTATCGTCTAGTCAAACAGAGAAACGATCAACAGAAGGAGTTCTGTGGCACCATTGCGGCTCGAGATGTGACAACTGAAGAGTTCAGAAGATGTAGTAATTGGAGAGCCGAGAAGCTTGTCTACTATTACAAATTGATGCGAAAGACCTATTGTCAAGTTGACAACTGGCCCAACTCACCGAAAATCAAGAAAACTTATGGCGAATATCTCAATTTGTTCGGCACTTTCTATGCGTTTCAGAAGTAGAATCATAGTGATTTTTCGCATAGTTTTTGTACATTTTCTTGTTTACTCTCGACCAAAGAAAGCGGGTCTCAATTATTTTATTCCTGTACACGATCTTATTCGTTTTCTTTCTTWACCAATAAATTGTCATAAAACACTCATGAATGCTTTATTAACAGATCAATTCAAAAAAAAAGAATACATTATTCAAGAACTACAGTTCCCTTATTATGCTTCAAACTGACTTCTCTCGGTTTTCTGTAATATTTTGTAAGTTTTGAAAGAAGTCGTCCCGTCCCATATGCTTATCAGCCTCCACTCGTAGCTCGACCAACTGTTGGATGTGTTCGTTGCTCAGCTGTTCCATCTTATCCGAATCCAAATCTTTTCCAATGTTTCCCTTTCGAATGCCGGCACTTGACAATTGTTTAGAGAGCATCATACAGTAGTTCTGGAAACATGTCAGTTAGCTTTTTTCTAGACACAAATCTTACAGTCCATTCTGTGATAAAGGGCTTCACAAACTCTGGCTTCGCATTGATGTGCCTTTTGAACTCATCCTTCACGTATGTGTCGCCCATAAGTCGAGCCGGCGCAGGTAATCCATAGTGGAGTCTGAAAAATTATGTTTTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATGCGTTTCAGAAGTAGAATC</pcr_primer_p1>
		<pcr_primer_p2>AGAGAAGTCAGTTTGAAGCATAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTATGCGTTTCAGAAGTAGAATCATAGTGATTTTTCGCATAGTTTTTGTACATTTTCTTGTTTACTCTCGACCAAAGAAAGCGGGTCTCAATTATTTTATTCCTGTACACGATCTTATTCGTTTTCTTTCTTTACCAATAAATTGTCATAAAACACTCATGAATGCTTTATTAACAGATCAATTCAAAAAAAAAGAATACATTATTCAAGAACTACAGTTCCCTTATTATGCTTCAAACTGACTTCTCT</canonical_amplicon>
		<polymorphic_amplicon>CTATGCGTTTCAGAAGTAGAATCATAGTGATTTTTCGCATAGTTTTTGTACATTTTCTTGTTTACTCTCGACCAAAGAAAGCGGGTCTCAATTATTTTATTCCTGTACACGATCTTATTCGTTTTCTTTCTTWACCAATAAATTGTCATAAAACACTCATGAATGCTTTATTAACAGATCAATTCAAAAAAAAAGAATACATTATTCAAGAACTACAGTTCCCTTATTATGCTTCAAACTGACTTCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37175</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>301859</contig_pos>
        <strand>+</strand>
        <context>TTATTAACAG[A/G]TCAATTCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTTTACCAATAAATTGTCATAAAACACTCATGAATGCTTTATTAACAG</left_flank>
        <right_flank>TCAATTCAAAAAAAAAGAATACATTATTCAAGAACTACAGTTCCCTTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAGAACGAGGAGCCAGAAGAAGAATGCCTTGCCAACGAAGAGAATCTGACTGACGAAGTGATCGAGCGACTGAAATCGGAAACTGCAATGTACTATCGTCTAGTCAAACAGAGAAACGATCAACAGAAGGAGTTCTGTGGCACCATTGCGGCTCGAGATGTGACAACTGAAGAGTTCAGAAGATGTAGTAATTGGAGAGCCGAGAAGCTTGTCTACTATTACAAATTGATGCGAAAGACCTATTGTCAAGTTGACAACTGGCCCAACTCACCGAAAATCAAGAAAACTTATGGCGAATATCTCAATTTGTTCGGCACTTTCTATGCGTTTCAGAAGTAGAATCATAGTGATTTTTCGCATAGTTTTTGTACATTTTCTTGTTTACTCTCGACCAAAGAAAGCGGGTCTCAATTATTTTATTCCTGTACACGATCTTATTCGTTTTCTTTCTTTACCAATAAATTGTCATAAAACACTCATGAATGCTTTATTAACAGATCAATTCAAAAAAAAAGAATACATTATTCAAGAACTACAGTTCCCTTATTATGCTTCAAACTGACTTCTCTCGGTTTTCTGTAATATTTTGTAAGTTTTGAAAGAAGTCGTCCCGTCCCATATGCTTATCAGCCTCCACTCGTAGCTCGACCAACTGTTGGATGTGTTCGTTGCTCAGCTGTTCCATCTTATCCGAATCCAAATCTTTTCCAATGTTTCCCTTTCGAATGCCGGCACTTGACAATTGTTTAGAGAGCATCATACAGTAGTTCTGGAAACATGTCAGTTAGCTTTTTTCTAGACACAAATCTTACAGTCCATTCTGTGATAAAGGGCTTCACAAACTCTGGCTTCGCATTGATGTGCCTTTTGAACTCATCCTTCACGTATGTGTCGCCCATAAGTCGAGCCGGCGCAGGTAATCCATAGTGGAGTCTGAAAAATTATGTTTTGGAACTAAAACAGTTAATATTTTACCTGAGGATACTTTTATACAAGTA</canonical>
            <polymorphic>TTCAGAACGAGGAGCCAGAAGAAGAATGCCTTGCCAACGAAGAGAATCTGACTGACGAAGTGATCGAGCGACTGAAATCGGAAACTGCAATGTACTATCGTCTAGTCAAACAGAGAAACGATCAACAGAAGGAGTTCTGTGGCACCATTGCGGCTCGAGATGTGACAACTGAAGAGTTCAGAAGATGTAGTAATTGGAGAGCCGAGAAGCTTGTCTACTATTACAAATTGATGCGAAAGACCTATTGTCAAGTTGACAACTGGCCCAACTCACCGAAAATCAAGAAAACTTATGGCGAATATCTCAATTTGTTCGGCACTTTCTATGCGTTTCAGAAGTAGAATCATAGTGATTTTTCGCATAGTTTTTGTACATTTTCTTGTTTACTCTCGACCAAAGAAAGCGGGTCTCAATTATTTTATTCCTGTACACGATCTTATTCGTTTTCTTTCTTTACCAATAAATTGTCATAAAACACTCATGAATGCTTTATTAACAGRTCAATTCAAAAAAAAAGAATACATTATTCAAGAACTACAGTTCCCTTATTATGCTTCAAACTGACTTCTCTCGGTTTTCTGTAATATTTTGTAAGTTTTGAAAGAAGTCGTCCCGTCCCATATGCTTATCAGCCTCCACTCGTAGCTCGACCAACTGTTGGATGTGTTCGTTGCTCAGCTGTTCCATCTTATCCGAATCCAAATCTTTTCCAATGTTTCCCTTTCGAATGCCGGCACTTGACAATTGTTTAGAGAGCATCATACAGTAGTTCTGGAAACATGTCAGTTAGCTTTTTTCTAGACACAAATCTTACAGTCCATTCTGTGATAAAGGGCTTCACAAACTCTGGCTTCGCATTGATGTGCCTTTTGAACTCATCCTTCACGTATGTGTCGCCCATAAGTCGAGCCGGCGCAGGTAATCCATAGTGGAGTCTGAAAAATTATGTTTTGGAACTAAAACAGTTAATATTTTACCTGAGGATACTTTTATACAAGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>502 313 66 61 58</canonical_bands>
                <polymorphic_bands>568 313 61 58</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATGCGTTTCAGAAGTAGAATC</pcr_primer_p1>
		<pcr_primer_p2>AGAGAAGTCAGTTTGAAGCATAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTATGCGTTTCAGAAGTAGAATCATAGTGATTTTTCGCATAGTTTTTGTACATTTTCTTGTTTACTCTCGACCAAAGAAAGCGGGTCTCAATTATTTTATTCCTGTACACGATCTTATTCGTTTTCTTTCTTTACCAATAAATTGTCATAAAACACTCATGAATGCTTTATTAACAGATCAATTCAAAAAAAAAGAATACATTATTCAAGAACTACAGTTCCCTTATTATGCTTCAAACTGACTTCTCT</canonical_amplicon>
		<polymorphic_amplicon>CTATGCGTTTCAGAAGTAGAATCATAGTGATTTTTCGCATAGTTTTTGTACATTTTCTTGTTTACTCTCGACCAAAGAAAGCGGGTCTCAATTATTTTATTCCTGTACACGATCTTATTCGTTTTCTTTCTTTACCAATAAATTGTCATAAAACACTCATGAATGCTTTATTAACAGRTCAATTCAAAAAAAAAGAATACATTATTCAAGAACTACAGTTCCCTTATTATGCTTCAAACTGACTTCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37176</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>301871</contig_pos>
        <strand>+</strand>
        <context>CAATTCAAAA[A/C]AAAAGAATAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATTGTCATAAAACACTCATGAATGCTTTATTAACAGATCAATTCAAAA</left_flank>
        <right_flank>AAAAGAATACATTATTCAAGAACTACAGTTCCCTTATTATGCTTCAAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCAGAAGAAGAATGCCTTGCCAACGAAGAGAATCTGACTGACGAAGTGATCGAGCGACTGAAATCGGAAACTGCAATGTACTATCGTCTAGTCAAACAGAGAAACGATCAACAGAAGGAGTTCTGTGGCACCATTGCGGCTCGAGATGTGACAACTGAAGAGTTCAGAAGATGTAGTAATTGGAGAGCCGAGAAGCTTGTCTACTATTACAAATTGATGCGAAAGACCTATTGTCAAGTTGACAACTGGCCCAACTCACCGAAAATCAAGAAAACTTATGGCGAATATCTCAATTTGTTCGGCACTTTCTATGCGTTTCAGAAGTAGAATCATAGTGATTTTTCGCATAGTTTTTGTACATTTTCTTGTTTACTCTCGACCAAAGAAAGCGGGTCTCAATTATTTTATTCCTGTACACGATCTTATTCGTTTTCTTTCTTTACCAATAAATTGTCATAAAACACTCATGAATGCTTTATTAACAGATCAATTCAAAAAAAAAGAATACATTATTCAAGAACTACAGTTCCCTTATTATGCTTCAAACTGACTTCTCTCGGTTTTCTGTAATATTTTGTAAGTTTTGAAAGAAGTCGTCCCGTCCCATATGCTTATCAGCCTCCACTCGTAGCTCGACCAACTGTTGGATGTGTTCGTTGCTCAGCTGTTCCATCTTATCCGAATCCAAATCTTTTCCAATGTTTCCCTTTCGAATGCCGGCACTTGACAATTGTTTAGAGAGCATCATACAGTAGTTCTGGAAACATGTCAGTTAGCTTTTTTCTAGACACAAATCTTACAGTCCATTCTGTGATAAAGGGCTTCACAAACTCTGGCTTCGCATTGATGTGCCTTTTGAACTCATCCTTCACGTATGTGTCGCCCATAAGTCGAGCCGGCGCAGGTAATCCATAGTGGAGTCTGAAAAATTATGTTTTGGAACTAAAACAGTTAATATTTTACCTGAGGATACTTTTATACAAGTACAACGGAAATCG</canonical>
            <polymorphic>AGCCAGAAGAAGAATGCCTTGCCAACGAAGAGAATCTGACTGACGAAGTGATCGAGCGACTGAAATCGGAAACTGCAATGTACTATCGTCTAGTCAAACAGAGAAACGATCAACAGAAGGAGTTCTGTGGCACCATTGCGGCTCGAGATGTGACAACTGAAGAGTTCAGAAGATGTAGTAATTGGAGAGCCGAGAAGCTTGTCTACTATTACAAATTGATGCGAAAGACCTATTGTCAAGTTGACAACTGGCCCAACTCACCGAAAATCAAGAAAACTTATGGCGAATATCTCAATTTGTTCGGCACTTTCTATGCGTTTCAGAAGTAGAATCATAGTGATTTTTCGCATAGTTTTTGTACATTTTCTTGTTTACTCTCGACCAAAGAAAGCGGGTCTCAATTATTTTATTCCTGTACACGATCTTATTCGTTTTCTTTCTTTACCAATAAATTGTCATAAAACACTCATGAATGCTTTATTAACAGATCAATTCAAAAMAAAAGAATACATTATTCAAGAACTACAGTTCCCTTATTATGCTTCAAACTGACTTCTCTCGGTTTTCTGTAATATTTTGTAAGTTTTGAAAGAAGTCGTCCCGTCCCATATGCTTATCAGCCTCCACTCGTAGCTCGACCAACTGTTGGATGTGTTCGTTGCTCAGCTGTTCCATCTTATCCGAATCCAAATCTTTTCCAATGTTTCCCTTTCGAATGCCGGCACTTGACAATTGTTTAGAGAGCATCATACAGTAGTTCTGGAAACATGTCAGTTAGCTTTTTTCTAGACACAAATCTTACAGTCCATTCTGTGATAAAGGGCTTCACAAACTCTGGCTTCGCATTGATGTGCCTTTTGAACTCATCCTTCACGTATGTGTCGCCCATAAGTCGAGCCGGCGCAGGTAATCCATAGTGGAGTCTGAAAAATTATGTTTTGGAACTAAAACAGTTAATATTTTACCTGAGGATACTTTTATACAAGTACAACGGAAATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATGCGTTTCAGAAGTAGAATC</pcr_primer_p1>
		<pcr_primer_p2>AGAGAAGTCAGTTTGAAGCATAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTATGCGTTTCAGAAGTAGAATCATAGTGATTTTTCGCATAGTTTTTGTACATTTTCTTGTTTACTCTCGACCAAAGAAAGCGGGTCTCAATTATTTTATTCCTGTACACGATCTTATTCGTTTTCTTTCTTTACCAATAAATTGTCATAAAACACTCATGAATGCTTTATTAACAGATCAATTCAAAAAAAAAGAATACATTATTCAAGAACTACAGTTCCCTTATTATGCTTCAAACTGACTTCTCT</canonical_amplicon>
		<polymorphic_amplicon>CTATGCGTTTCAGAAGTAGAATCATAGTGATTTTTCGCATAGTTTTTGTACATTTTCTTGTTTACTCTCGACCAAAGAAAGCGGGTCTCAATTATTTTATTCCTGTACACGATCTTATTCGTTTTCTTTCTTTACCAATAAATTGTCATAAAACACTCATGAATGCTTTATTAACAGATCAATTCAAAAMAAAAGAATACATTATTCAAGAACTACAGTTCCCTTATTATGCTTCAAACTGACTTCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37177</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>301903</contig_pos>
        <strand></strand>
        <context>ACTACAGTTC[C/A]CTTATTATGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TAACAGATCAATTCAAAAAAAAAGAATACATTATTCAAGAACTACAGTTC</left_flank>
        <right_flank>CTTATTATGCTTCAAACTGACTTCTCTCGGTTTTCTGTAATATTTTGTAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCTGACTGACGAAGTGATCGAGCGACTGAAATCGGAAACTGCAATGTACTATCGTCTAGTCAAACAGAGAAACGATCAACAGAAGGAGTTCTGTGGCACCATTGCGGCTCGAGATGTGACAACTGAAGAGTTCAGAAGATGTAGTAATTGGAGAGCCGAGAAGCTTGTCTACTATTACAAATTGATGCGAAAGACCTATTGTCAAGTTGACAACTGGCCCAACTCACCGAAAATCAAGAAAACTTATGGCGAATATCTCAATTTGTTCGGCACTTTCTATGCGTTTCAGAAGTAGAATCATAGTGATTTTTCGCATAGTTTTTGTACATTTTCTTGTTTACTCTCGACCAAAGAAAGCGGGTCTCAATTATTTTATTCCTGTACACGATCTTATTCGTTTTCTTTCTTTACCAATAAATTGTCATAAAACACTCATGAATGCTTTATTAACAGATCAATTCAAAAAAAAAGAATACATTATTCAAGAACTACAGTTCCCTTATTATGCTTCAAACTGACTTCTCTCGGTTTTCTGTAATATTTTGTAAGTTTTGAAAGAAGTCGTCCCGTCCCATATGCTTATCAGCCTCCACTCGTAGCTCGACCAACTGTTGGATGTGTTCGTTGCTCAGCTGTTCCATCTTATCCGAATCCAAATCTTTTCCAATGTTTCCCTTTCGAATGCCGGCACTTGACAATTGTTTAGAGAGCATCATACAGTAGTTCTGGAAACATGTCAGTTAGCTTTTTTCTAGACACAAATCTTACAGTCCATTCTGTGATAAAGGGCTTCACAAACTCTGGCTTCGCATTGATGTGCCTTTTGAACTCATCCTTCACGTATGTGTCGCCCATAAGTCGAGCCGGCGCAGGTAATCCATAGTGGAGTCTGAAAAATTATGTTTTGGAACTAAAACAGTTAATATTTTACCTGAGGATACTTTTATACAAGTACAACGGAAATCGTTCAGGGTTAATAGCTCTTGCGGCAGCCTGAG</canonical>
            <polymorphic>AATCTGACTGACGAAGTGATCGAGCGACTGAAATCGGAAACTGCAATGTACTATCGTCTAGTCAAACAGAGAAACGATCAACAGAAGGAGTTCTGTGGCACCATTGCGGCTCGAGATGTGACAACTGAAGAGTTCAGAAGATGTAGTAATTGGAGAGCCGAGAAGCTTGTCTACTATTACAAATTGATGCGAAAGACCTATTGTCAAGTTGACAACTGGCCCAACTCACCGAAAATCAAGAAAACTTATGGCGAATATCTCAATTTGTTCGGCACTTTCTATGCGTTTCAGAAGTAGAATCATAGTGATTTTTCGCATAGTTTTTGTACATTTTCTTGTTTACTCTCGACCAAAGAAAGCGGGTCTCAATTATTTTATTCCTGTACACGATCTTATTCGTTTTCTTTCTTTACCAATAAATTGTCATAAAACACTCATGAATGCTTTATTAACAGATCAATTCAAAAAAAAAGAATACATTATTCAAGAACTACAGTTCMCTTATTATGCTTCAAACTGACTTCTCTCGGTTTTCTGTAATATTTTGTAAGTTTTGAAAGAAGTCGTCCCGTCCCATATGCTTATCAGCCTCCACTCGTAGCTCGACCAACTGTTGGATGTGTTCGTTGCTCAGCTGTTCCATCTTATCCGAATCCAAATCTTTTCCAATGTTTCCCTTTCGAATGCCGGCACTTGACAATTGTTTAGAGAGCATCATACAGTAGTTCTGGAAACATGTCAGTTAGCTTTTTTCTAGACACAAATCTTACAGTCCATTCTGTGATAAAGGGCTTCACAAACTCTGGCTTCGCATTGATGTGCCTTTTGAACTCATCCTTCACGTATGTGTCGCCCATAAGTCGAGCCGGCGCAGGTAATCCATAGTGGAGTCTGAAAAATTATGTTTTGGAACTAAAACAGTTAATATTTTACCTGAGGATACTTTTATACAAGTACAACGGAAATCGTTCAGGGTTAATAGCTCTTGCGGCAGCCTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCATAGTTTTTGTACATTTTCTTG</pcr_primer_p1>
		<pcr_primer_p2>GACGACTTCTTTCAAAACTTACA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GCATAGTTTTTGTACATTTTCTTGTTTACTCTCGACCAAAGAAAGCGGGTCTCAATTATTTTATTCCTGTACACGATCTTATTCGTTTTCTTTCTTTACCAATAAATTGTCATAAAACACTCATGAATGCTTTATTAACAGATCAATTCAAAAAAAAAGAATACATTATTCAAGAACTACAGTTCCCTTATTATGCTTCAAACTGACTTCTCTCGGTTTTCTGTAATATTTTGTAAGTTTTGAAAGAAGTCGTC</canonical_amplicon>
		<polymorphic_amplicon>GCATAGTTTTTGTACATTTTCTTGTTTACTCTCGACCAAAGAAAGCGGGTCTCAATTATTTTATTCCTGTACACGATCTTATTCGTTTTCTTTCTTTACCAATAAATTGTCATAAAACACTCATGAATGCTTTATTAACAGATCAATTCAAAAAAAAAGAATACATTATTCAAGAACTACAGTTCMCTTATTATGCTTCAAACTGACTTCTCTCGGTTTTCTGTAATATTTTGTAAGTTTTGAAAGAAGTCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37178</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>302419</contig_pos>
        <strand>+</strand>
        <context>TTCATGATGT[A/T]AAAATCTWAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGTTCAGGGTTAATAGCTCTTGCGGCAGCCTGAGCAGCTTTCATGATGT</left_flank>
        <right_flank>AAAATCTTAAAAAATAAAAATAATTCCAAGAGTTCTCGAGGAGTACACGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGACTTCTCTCGGTTTTCTGTAATATTTTGTAAGTTTTGAAAGAAGTCGTCCCGTCCCATATGCTTATCAGCCTCCACTCGTAGCTCGACCAACTGTTGGATGTGTTCGTTGCTCAGCTGTTCCATCTTATCCGAATCCAAATCTTTTCCAATGTTTCCCTTTCGAATGCCGGCACTTGACAATTGTTTAGAGAGCATCATACAGTAGTTCTGGAAACATGTCAGTTAGCTTTTTTCTAGACACAAATCTTACAGTCCATTCTGTGATAAAGGGCTTCACAAACTCTGGCTTCGCATTGATGTGCCTTTTGAACTCATCCTTCACGTATGTGTCGCCCATAAGTCGAGCCGGCGCAGGTAATCCATAGTGGAGTCTGAAAAATTATGTTTTGGAACTAAAACAGTTAATATTTTACCTGAGGATACTTTTATACAAGTACAACGGAAATCGTTCAGGGTTAATAGCTCTTGCGGCAGCCTGAGCAGCTTTCATGATGTAAAAATCTTAAAAAATAAAAATAATTCCAAGAGTTCTCGAGGAGTACACGAGGTGATGGCCTAGAAAGCACCCAGTTGGACGGCCGTGTACTCCACGAGGACAAGATTTGTTTTTTCGGAAATCTGAAATTTTCCCTTGCTTACACAACAAAACAGACTGAAAATGGCGGATAATGTAGAAGAAATGCCAGATGAGGAGATTCCAGCAAAAAGACCAAAGACCTCCGATTCTGATGAGTCATCAAGAGTAGGTGTTATTTGCTCTTTTAATAAATCTAACCTTGTTTGAAAGTTTTTCCAGTTTCGTCCTCCATACACAAGATATCATCAAATCGTTCGTGAAGAATCGAAACATCATCTGCTGCTTATTTTCACTGGAAGTATTGCCGTCATGAAGGCACCAGAGTTGATCAGCGAATTGTACGCGAAAATTGGAAGAGATCGTTTGTTCATCAAGGTTTTATTCCTTCAATTGGCGAGATTTTATTACTGATTGCCACA</canonical>
            <polymorphic>CTGACTTCTCTCGGTTTTCTGTAATATTTTGTAAGTTTTGAAAGAAGTCGTCCCGTCCCATATGCTTATCAGCCTCCACTCGTAGCTCGACCAACTGTTGGATGTGTTCGTTGCTCAGCTGTTCCATCTTATCCGAATCCAAATCTTTTCCAATGTTTCCCTTTCGAATGCCGGCACTTGACAATTGTTTAGAGAGCATCATACAGTAGTTCTGGAAACATGTCAGTTAGCTTTTTTCTAGACACAAATCTTACAGTCCATTCTGTGATAAAGGGCTTCACAAACTCTGGCTTCGCATTGATGTGCCTTTTGAACTCATCCTTCACGTATGTGTCGCCCATAAGTCGAGCCGGCGCAGGTAATCCATAGTGGAGTCTGAAAAATTATGTTTTGGAACTAAAACAGTTAATATTTTACCTGAGGATACTTTTATACAAGTACAACGGAAATCGTTCAGGGTTAATAGCTCTTGCGGCAGCCTGAGCAGCTTTCATGATGTWAAAATCTTAAAAAATAAAAATAATTCCAAGAGTTCTCGAGGAGTACACGAGGTGATGGCCTAGAAAGCACCCAGTTGGACGGCCGTGTACTCCACGAGGACAAGATTTGTTTTTTCGGAAATCTGAAATTTTCCCTTGCTTACACAACAAAACAGACTGAAAATGGCGGATAATGTAGAAGAAATGCCAGATGAGGAGATTCCAGCAAAAAGACCAAAGACCTCCGATTCTGATGAGTCATCAAGAGTAGGTGTTATTTGCTCTTTTAATAAATCTAACCTTGTTTGAAAGTTTTTCCAGTTTCGTCCTCCATACACAAGATATCATCAAATCGTTCGTGAAGAATCGAAACATCATCTGCTGCTTATTTTCACTGGAAGTATTGCCGTCATGAAGGCACCAGAGTTGATCAGCGAATTGTACGCGAAAATTGGAAGAGATCGTTTGTTCATCAAGGTTTTATTCCTTCAATTGGCGAGATTTTATTACTGATTGCCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAATCGTTCAGGGTTAATA</pcr_primer_p1>
		<pcr_primer_p2>TCTGGCATTTCTTCTACATTATC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGAAATCGTTCAGGGTTAATAGCTCTTGCGGCAGCCTGAGCAGCTTTCATGATGTAAAAATCTTAAAAAATAAAAATAATTCCAAGAGTTCTCGAGGAGTACACGAGGTGATGGCCTAGAAAGCACCCAGTTGGACGGCCGTGTACTCCACGAGGACAAGATTTGTTTTTTCGGAAATCTGAAATTTTCCCTTGCTTACACAACAAAACAGACTGAAAATGGCGGATAATGTAGAAGAAATGCCAGA</canonical_amplicon>
		<polymorphic_amplicon>GGAAATCGTTCAGGGTTAATAGCTCTTGCGGCAGCCTGAGCAGCTTTCATGATGTWAAAATCTTAAAAAATAAAAATAATTCCAAGAGTTCTCGAGGAGTACACGAGGTGATGGCCTAGAAAGCACCCAGTTGGACGGCCGTGTACTCCACGAGGACAAGATTTGTTTTTTCGGAAATCTGAAATTTTCCCTTGCTTACACAACAAAACAGACTGAAAATGGCGGATAATGTAGAAGAAATGCCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37179</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>302427</contig_pos>
        <strand></strand>
        <context>GTWAAAATCT[T/A]AAAAAATAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GGTTAATAGCTCTTGCGGCAGCCTGAGCAGCTTTCATGATGTAAAAATCT</left_flank>
        <right_flank>AAAAAATAAAAATAATTCCAAGAGTTCTCGAGGAGTACACGAGGTGATGG</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCGGTTTTCTGTAATATTTTGTAAGTTTTGAAAGAAGTCGTCCCGTCCCATATGCTTATCAGCCTCCACTCGTAGCTCGACCAACTGTTGGATGTGTTCGTTGCTCAGCTGTTCCATCTTATCCGAATCCAAATCTTTTCCAATGTTTCCCTTTCGAATGCCGGCACTTGACAATTGTTTAGAGAGCATCATACAGTAGTTCTGGAAACATGTCAGTTAGCTTTTTTCTAGACACAAATCTTACAGTCCATTCTGTGATAAAGGGCTTCACAAACTCTGGCTTCGCATTGATGTGCCTTTTGAACTCATCCTTCACGTATGTGTCGCCCATAAGTCGAGCCGGCGCAGGTAATCCATAGTGGAGTCTGAAAAATTATGTTTTGGAACTAAAACAGTTAATATTTTACCTGAGGATACTTTTATACAAGTACAACGGAAATCGTTCAGGGTTAATAGCTCTTGCGGCAGCCTGAGCAGCTTTCATGATGTAAAAATCTTAAAAAATAAAAATAATTCCAAGAGTTCTCGAGGAGTACACGAGGTGATGGCCTAGAAAGCACCCAGTTGGACGGCCGTGTACTCCACGAGGACAAGATTTGTTTTTTCGGAAATCTGAAATTTTCCCTTGCTTACACAACAAAACAGACTGAAAATGGCGGATAATGTAGAAGAAATGCCAGATGAGGAGATTCCAGCAAAAAGACCAAAGACCTCCGATTCTGATGAGTCATCAAGAGTAGGTGTTATTTGCTCTTTTAATAAATCTAACCTTGTTTGAAAGTTTTTCCAGTTTCGTCCTCCATACACAAGATATCATCAAATCGTTCGTGAAGAATCGAAACATCATCTGCTGCTTATTTTCACTGGAAGTATTGCCGTCATGAAGGCACCAGAGTTGATCAGCGAATTGTACGCGAAAATTGGAAGAGATCGTTTGTTCATCAAGGTTTTATTCCTTCAATTGGCGAGATTTTATTACTGATTGCCACATTCAGATC</canonical>
            <polymorphic>TCTCGGTTTTCTGTAATATTTTGTAAGTTTTGAAAGAAGTCGTCCCGTCCCATATGCTTATCAGCCTCCACTCGTAGCTCGACCAACTGTTGGATGTGTTCGTTGCTCAGCTGTTCCATCTTATCCGAATCCAAATCTTTTCCAATGTTTCCCTTTCGAATGCCGGCACTTGACAATTGTTTAGAGAGCATCATACAGTAGTTCTGGAAACATGTCAGTTAGCTTTTTTCTAGACACAAATCTTACAGTCCATTCTGTGATAAAGGGCTTCACAAACTCTGGCTTCGCATTGATGTGCCTTTTGAACTCATCCTTCACGTATGTGTCGCCCATAAGTCGAGCCGGCGCAGGTAATCCATAGTGGAGTCTGAAAAATTATGTTTTGGAACTAAAACAGTTAATATTTTACCTGAGGATACTTTTATACAAGTACAACGGAAATCGTTCAGGGTTAATAGCTCTTGCGGCAGCCTGAGCAGCTTTCATGATGTAAAAATCTWAAAAAATAAAAATAATTCCAAGAGTTCTCGAGGAGTACACGAGGTGATGGCCTAGAAAGCACCCAGTTGGACGGCCGTGTACTCCACGAGGACAAGATTTGTTTTTTCGGAAATCTGAAATTTTCCCTTGCTTACACAACAAAACAGACTGAAAATGGCGGATAATGTAGAAGAAATGCCAGATGAGGAGATTCCAGCAAAAAGACCAAAGACCTCCGATTCTGATGAGTCATCAAGAGTAGGTGTTATTTGCTCTTTTAATAAATCTAACCTTGTTTGAAAGTTTTTCCAGTTTCGTCCTCCATACACAAGATATCATCAAATCGTTCGTGAAGAATCGAAACATCATCTGCTGCTTATTTTCACTGGAAGTATTGCCGTCATGAAGGCACCAGAGTTGATCAGCGAATTGTACGCGAAAATTGGAAGAGATCGTTTGTTCATCAAGGTTTTATTCCTTCAATTGGCGAGATTTTATTACTGATTGCCACATTCAGATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>398 259 242 54 47</canonical_bands>
                <polymorphic_bands>398 306 242 54</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAATCGTTCAGGGTTAATA</pcr_primer_p1>
		<pcr_primer_p2>TCTGGCATTTCTTCTACATTATC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGAAATCGTTCAGGGTTAATAGCTCTTGCGGCAGCCTGAGCAGCTTTCATGATGTAAAAATCTTAAAAAATAAAAATAATTCCAAGAGTTCTCGAGGAGTACACGAGGTGATGGCCTAGAAAGCACCCAGTTGGACGGCCGTGTACTCCACGAGGACAAGATTTGTTTTTTCGGAAATCTGAAATTTTCCCTTGCTTACACAACAAAACAGACTGAAAATGGCGGATAATGTAGAAGAAATGCCAGA</canonical_amplicon>
		<polymorphic_amplicon>GGAAATCGTTCAGGGTTAATAGCTCTTGCGGCAGCCTGAGCAGCTTTCATGATGTAAAAATCTWAAAAAATAAAAATAATTCCAAGAGTTCTCGAGGAGTACACGAGGTGATGGCCTAGAAAGCACCCAGTTGGACGGCCGTGTACTCCACGAGGACAAGATTTGTTTTTTCGGAAATCTGAAATTTTCCCTTGCTTACACAACAAAACAGACTGAAAATGGCGGATAATGTAGAAGAAATGCCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37180</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>348657</contig_pos>
        <strand>+</strand>
        <context>ACGCTCTAGG[C/T]TAGCATTCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAACGCGGTCGTCGCCTCTCACACGCGTGGTGTAGTGGGTACGCTCTAGG</left_flank>
        <right_flank>TAGCATTCAGAAGGTCGGAGGTTCAATCCCCGCTGATGGTTCCCCTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGTTTTGTTATGATTGTCCGAAGATGAACGGTGTAATATTTCTTGCTTGAGATCACGCAACTTTAACAAGCTATAACTCTGCTCAAAACTGATAAGATAAATTGAAAGTTGGCCAGTTTTATGAATTATTTGAAGTTATGCACTCCAAATATGAGCCTAGTGGAACCCATTACTCATATTTTATTGTGTAGCTACAGAGGGCTTGTCCGTTAAAGACTACAGATACAAACTTTAAAAAAACCTCCATCAGATCAGAACCGTTAAAGGAGGGGAGACATCAAAATTTTCAAAAGTTTTATTTTTTCTCAAAAGAGGTAACTCTAAAGTATAAGTATAGTTTTGTAATTAAAAACCAGAAAAAAAGGCTACACCGACGAAAAAATGCTTTTTTTTCTGACCGTAATTTCCTCACTCGTTTGCTGCAGCGGCGTCGCTTCATAAGACAAATCAACGCGGTCGTCGCCTCTCACACGCGTGGTGTAGTGGGTACGCTCTAGGCTAGCATTCAGAAGGTCGGAGGTTCAATCCCCGCTGATGGTTCCCCTTTTTTCTTATCTTGTCTCTTTTGGATTCAACGTTTGGAACTCAATATTTTTGGAATGGAAGTTTTCGGAACGTCAGCGTGCCGTCAAAGCCTAGCTACGAGATAAGAAACACTGTTGAAAATAATATATGCAGTTTATTATGTCAACAAATAAATTATGCAAAAAATACATTAAATATTTAGTAAGAACACAAACAATTCAAAAAATCGTAAAATTATAATTTGTTTCCTTCCGAGTTTTTCGTCGCAAGGCGAAGTGAGCAGAAGATGTGAAGGCGTTGCTGAAAACCTCATTCATGAAGCATACTGTATTGTTTTCATTTTCGGAGTAATAATGAGACGAAAAAATACCAGTTGAAAGAAAGACGAAACGGCAATCGGAGAAAAAAATTTGTTTTTGCATATTTTTAGAAAAAACCGGCCACTGACAAAATAATCATTCGACTGAACCGGAA</canonical>
            <polymorphic>AGGTTTTGTTATGATTGTCCGAAGATGAACGGTGTAATATTTCTTGCTTGAGATCACGCAACTTTAACAAGCTATAACTCTGCTCAAAACTGATAAGATAAATTGAAAGTTGGCCAGTTTTATGAATTATTTGAAGTTATGCACTCCAAATATGAGCCTAGTGGAACCCATTACTCATATTTTATTGTGTAGCTACAGAGGGCTTGTCCGTTAAAGACTACAGATACAAACTTTAAAAAAACCTCCATCAGATCAGAACCGTTAAAGGAGGGGAGACATCAAAATTTTCAAAAGTTTTATTTTTTCTCAAAAGAGGTAACTCTAAAGTATAAGTATAGTTTTGTAATTAAAAACCAGAAAAAAAGGCTACACCGACGAAAAAATGCTTTTTTTTCTGACCGTAATTTCCTCACTCGTTTGCTGCAGCGGCGTCGCTTCATAAGACAAATCAACGCGGTCGTCGCCTCTCACACGCGTGGTGTAGTGGGTACGCTCTAGGYTAGCATTCAGAAGGTCGGAGGTTCAATCCCCGCTGATGGTTCCCCTTTTTTCTTATCTTGTCTCTTTTGGATTCAACGTTTGGAACTCAATATTTTTGGAATGGAAGTTTTCGGAACGTCAGCGTGCCGTCAAAGCCTAGCTACGAGATAAGAAACACTGTTGAAAATAATATATGCAGTTTATTATGTCAACAAATAAATTATGCAAAAAATACATTAAATATTTAGTAAGAACACAAACAATTCAAAAAATCGTAAAATTATAATTTGTTTCCTTCCGAGTTTTTCGTCGCAAGGCGAAGTGAGCAGAAGATGTGAAGGCGTTGCTGAAAACCTCATTCATGAAGCATACTGTATTGTTTTCATTTTCGGAGTAATAATGAGACGAAAAAATACCAGTTGAAAGAAAGACGAAACGGCAATCGGAGAAAAAAATTTGTTTTTGCATATTTTTAGAAAAAACCGGCCACTGACAAAATAATCATTCGACTGAACCGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCTAGC</site>
                <isoschizomers>
                    <enzyme>AsuNHI</enzyme>
                    <enzyme>BmtI</enzyme>
                    <enzyme>NheI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>363 337 158 137 5</canonical_bands>
                <polymorphic_bands>363 337 158 142</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 376 123</canonical_bands>
                <polymorphic_bands>624 376</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>326 164 136 133 71 43 42 36 34 10 5</canonical_bands>
                <polymorphic_bands>326 269 164 71 43 42 36 34 10 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCGCTTCATAAGACAAATCA</pcr_primer_p1>
		<pcr_primer_p2>ACTGCATATATTATTTTCAACAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCGCTTCATAAGACAAATCAACGCGGTCGTCGCCTCTCACACGCGTGGTGTAGTGGGTACGCTCTAGGCTAGCATTCAGAAGGTCGGAGGTTCAATCCCCGCTGATGGTTCCCCTTTTTTCTTATCTTGTCTCTTTTGGATTCAACGTTTGGAACTCAATATTTTTGGAATGGAAGTTTTCGGAACGTCAGCGTGCCGTCAAAGCCTAGCTACGAGATAAGAAACACTGTTGAAAATAATATATGCAGT</canonical_amplicon>
		<polymorphic_amplicon>GTCGCTTCATAAGACAAATCAACGCGGTCGTCGCCTCTCACACGCGTGGTGTAGTGGGTACGCTCTAGGYTAGCATTCAGAAGGTCGGAGGTTCAATCCCCGCTGATGGTTCCCCTTTTTTCTTATCTTGTCTCTTTTGGATTCAACGTTTGGAACTCAATATTTTTGGAATGGAAGTTTTCGGAACGTCAGCGTGCCGTCAAAGCCTAGCTACGAGATAAGAAACACTGTTGAAAATAATATATGCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37181</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>348679</contig_pos>
        <strand>+</strand>
        <context>AGGTCGGAGG[C/T]TCAATCCCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGCGTGGTGTAGTGGGTACGCTCTAGGCTAGCATTCAGAAGGTCGGAGG</left_flank>
        <right_flank>TCAATCCCCGCTGATGGTTCCCCTTTTTTCTTATCTTGTCTCTTTTGGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATGAACGGTGTAATATTTCTTGCTTGAGATCACGCAACTTTAACAAGCTATAACTCTGCTCAAAACTGATAAGATAAATTGAAAGTTGGCCAGTTTTATGAATTATTTGAAGTTATGCACTCCAAATATGAGCCTAGTGGAACCCATTACTCATATTTTATTGTGTAGCTACAGAGGGCTTGTCCGTTAAAGACTACAGATACAAACTTTAAAAAAACCTCCATCAGATCAGAACCGTTAAAGGAGGGGAGACATCAAAATTTTCAAAAGTTTTATTTTTTCTCAAAAGAGGTAACTCTAAAGTATAAGTATAGTTTTGTAATTAAAAACCAGAAAAAAAGGCTACACCGACGAAAAAATGCTTTTTTTTCTGACCGTAATTTCCTCACTCGTTTGCTGCAGCGGCGTCGCTTCATAAGACAAATCAACGCGGTCGTCGCCTCTCACACGCGTGGTGTAGTGGGTACGCTCTAGGCTAGCATTCAGAAGGTCGGAGGTTCAATCCCCGCTGATGGTTCCCCTTTTTTCTTATCTTGTCTCTTTTGGATTCAACGTTTGGAACTCAATATTTTTGGAATGGAAGTTTTCGGAACGTCAGCGTGCCGTCAAAGCCTAGCTACGAGATAAGAAACACTGTTGAAAATAATATATGCAGTTTATTATGTCAACAAATAAATTATGCAAAAAATACATTAAATATTTAGTAAGAACACAAACAATTCAAAAAATCGTAAAATTATAATTTGTTTCCTTCCGAGTTTTTCGTCGCAAGGCGAAGTGAGCAGAAGATGTGAAGGCGTTGCTGAAAACCTCATTCATGAAGCATACTGTATTGTTTTCATTTTCGGAGTAATAATGAGACGAAAAAATACCAGTTGAAAGAAAGACGAAACGGCAATCGGAGAAAAAAATTTGTTTTTGCATATTTTTAGAAAAAACCGGCCACTGACAAAATAATCATTCGACTGAACCGGAAATTTACGAAAAAAAATTTATTT</canonical>
            <polymorphic>AGATGAACGGTGTAATATTTCTTGCTTGAGATCACGCAACTTTAACAAGCTATAACTCTGCTCAAAACTGATAAGATAAATTGAAAGTTGGCCAGTTTTATGAATTATTTGAAGTTATGCACTCCAAATATGAGCCTAGTGGAACCCATTACTCATATTTTATTGTGTAGCTACAGAGGGCTTGTCCGTTAAAGACTACAGATACAAACTTTAAAAAAACCTCCATCAGATCAGAACCGTTAAAGGAGGGGAGACATCAAAATTTTCAAAAGTTTTATTTTTTCTCAAAAGAGGTAACTCTAAAGTATAAGTATAGTTTTGTAATTAAAAACCAGAAAAAAAGGCTACACCGACGAAAAAATGCTTTTTTTTCTGACCGTAATTTCCTCACTCGTTTGCTGCAGCGGCGTCGCTTCATAAGACAAATCAACGCGGTCGTCGCCTCTCACACGCGTGGTGTAGTGGGTACGCTCTAGGCTAGCATTCAGAAGGTCGGAGGYTCAATCCCCGCTGATGGTTCCCCTTTTTTCTTATCTTGTCTCTTTTGGATTCAACGTTTGGAACTCAATATTTTTGGAATGGAAGTTTTCGGAACGTCAGCGTGCCGTCAAAGCCTAGCTACGAGATAAGAAACACTGTTGAAAATAATATATGCAGTTTATTATGTCAACAAATAAATTATGCAAAAAATACATTAAATATTTAGTAAGAACACAAACAATTCAAAAAATCGTAAAATTATAATTTGTTTCCTTCCGAGTTTTTCGTCGCAAGGCGAAGTGAGCAGAAGATGTGAAGGCGTTGCTGAAAACCTCATTCATGAAGCATACTGTATTGTTTTCATTTTCGGAGTAATAATGAGACGAAAAAATACCAGTTGAAAGAAAGACGAAACGGCAATCGGAGAAAAAAATTTGTTTTTGCATATTTTTAGAAAAAACCGGCCACTGACAAAATAATCATTCGACTGAACCGGAAATTTACGAAAAAAAATTTATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCGCTTCATAAGACAAATCA</pcr_primer_p1>
		<pcr_primer_p2>ACTGCATATATTATTTTCAACAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCGCTTCATAAGACAAATCAACGCGGTCGTCGCCTCTCACACGCGTGGTGTAGTGGGTACGCTCTAGGCTAGCATTCAGAAGGTCGGAGGTTCAATCCCCGCTGATGGTTCCCCTTTTTTCTTATCTTGTCTCTTTTGGATTCAACGTTTGGAACTCAATATTTTTGGAATGGAAGTTTTCGGAACGTCAGCGTGCCGTCAAAGCCTAGCTACGAGATAAGAAACACTGTTGAAAATAATATATGCAGT</canonical_amplicon>
		<polymorphic_amplicon>GTCGCTTCATAAGACAAATCAACGCGGTCGTCGCCTCTCACACGCGTGGTGTAGTGGGTACGCTCTAGGCTAGCATTCAGAAGGTCGGAGGYTCAATCCCCGCTGATGGTTCCCCTTTTTTCTTATCTTGTCTCTTTTGGATTCAACGTTTGGAACTCAATATTTTTGGAATGGAAGTTTTCGGAACGTCAGCGTGCCGTCAAAGCCTAGCTACGAGATAAGAAACACTGTTGAAAATAATATATGCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37182</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>348848</contig_pos>
        <strand>+</strand>
        <context>TTATTATGTC[A/G]ACAAATAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTACGAGATAAGAAACACTGTTGAAAATAATATATGCAGTTTATTATGTC</left_flank>
        <right_flank>ACAAATAAATTATGCAAAAAATACATTAAATATTTAGTAAGAACACAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTACAGAGGGCTTGTCCGTTAAAGACTACAGATACAAACTTTAAAAAAACCTCCATCAGATCAGAACCGTTAAAGGAGGGGAGACATCAAAATTTTCAAAAGTTTTATTTTTTCTCAAAAGAGGTAACTCTAAAGTATAAGTATAGTTTTGTAATTAAAAACCAGAAAAAAAGGCTACACCGACGAAAAAATGCTTTTTTTTCTGACCGTAATTTCCTCACTCGTTTGCTGCAGCGGCGTCGCTTCATAAGACAAATCAACGCGGTCGTCGCCTCTCACACGCGTGGTGTAGTGGGTACGCTCTAGGCTAGCATTCAGAAGGTCGGAGGTTCAATCCCCGCTGATGGTTCCCCTTTTTTCTTATCTTGTCTCTTTTGGATTCAACGTTTGGAACTCAATATTTTTGGAATGGAAGTTTTCGGAACGTCAGCGTGCCGTCAAAGCCTAGCTACGAGATAAGAAACACTGTTGAAAATAATATATGCAGTTTATTATGTCAACAAATAAATTATGCAAAAAATACATTAAATATTTAGTAAGAACACAAACAATTCAAAAAATCGTAAAATTATAATTTGTTTCCTTCCGAGTTTTTCGTCGCAAGGCGAAGTGAGCAGAAGATGTGAAGGCGTTGCTGAAAACCTCATTCATGAAGCATACTGTATTGTTTTCATTTTCGGAGTAATAATGAGACGAAAAAATACCAGTTGAAAGAAAGACGAAACGGCAATCGGAGAAAAAAATTTGTTTTTGCATATTTTTAGAAAAAACCGGCCACTGACAAAATAATCATTCGACTGAACCGGAAATTTACGAAAAAAAATTTATTTTATATGATTTTTACAATAAATTACAAAAAAACCGTTTTTTAAGTTGTAAAGTCGTTTAAAATTTGGAAAAATGAAGTCGGAAAATAAAAAAATAAAAAAATTTTGCGCGTCGGATTGCGTGCTTTAGGTGCGAACACCGCGACGGCAAATCACACGTTCCCTGAAATTT</canonical>
            <polymorphic>GCTACAGAGGGCTTGTCCGTTAAAGACTACAGATACAAACTTTAAAAAAACCTCCATCAGATCAGAACCGTTAAAGGAGGGGAGACATCAAAATTTTCAAAAGTTTTATTTTTTCTCAAAAGAGGTAACTCTAAAGTATAAGTATAGTTTTGTAATTAAAAACCAGAAAAAAAGGCTACACCGACGAAAAAATGCTTTTTTTTCTGACCGTAATTTCCTCACTCGTTTGCTGCAGCGGCGTCGCTTCATAAGACAAATCAACGCGGTCGTCGCCTCTCACACGCGTGGTGTAGTGGGTACGCTCTAGGCTAGCATTCAGAAGGTCGGAGGTTCAATCCCCGCTGATGGTTCCCCTTTTTTCTTATCTTGTCTCTTTTGGATTCAACGTTTGGAACTCAATATTTTTGGAATGGAAGTTTTCGGAACGTCAGCGTGCCGTCAAAGCCTAGCTACGAGATAAGAAACACTGTTGAAAATAATATATGCAGTTTATTATGTCRACAAATAAATTATGCAAAAAATACATTAAATATTTAGTAAGAACACAAACAATTCAAAAAATCGTAAAATTATAATTTGTTTCCTTCCGAGTTTTTCGTCGCAAGGCGAAGTGAGCAGAAGATGTGAAGGCGTTGCTGAAAACCTCATTCATGAAGCATACTGTATTGTTTTCATTTTCGGAGTAATAATGAGACGAAAAAATACCAGTTGAAAGAAAGACGAAACGGCAATCGGAGAAAAAAATTTGTTTTTGCATATTTTTAGAAAAAACCGGCCACTGACAAAATAATCATTCGACTGAACCGGAAATTTACGAAAAAAAATTTATTTTATATGATTTTTACAATAAATTACAAAAAAACCGTTTTTTAAGTTGTAAAGTCGTTTAAAATTTGGAAAAATGAAGTCGGAAAATAAAAAAATAAAAAAATTTTGCGCGTCGGATTGCGTGCTTTAGGTGCGAACACCGCGACGGCAAATCACACGTTCCCTGAAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCCTAGCTACGAGATAAGAAAC</pcr_primer_p1>
		<pcr_primer_p2>CATTATTACTCCGAAAATGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGCCTAGCTACGAGATAAGAAACACTGTTGAAAATAATATATGCAGTTTATTATGTCAACAAATAAATTATGCAAAAAATACATTAAATATTTAGTAAGAACACAAACAATTCAAAAAATCGTAAAATTATAATTTGTTTCCTTCCGAGTTTTTCGTCGCAAGGCGAAGTGAGCAGAAGATGTGAAGGCGTTGCTGAAAACCTCATTCATGAAGCATACTGTATTGTTTTCATTTTCGGAGTAATAATG</canonical_amplicon>
		<polymorphic_amplicon>AGCCTAGCTACGAGATAAGAAACACTGTTGAAAATAATATATGCAGTTTATTATGTCRACAAATAAATTATGCAAAAAATACATTAAATATTTAGTAAGAACACAAACAATTCAAAAAATCGTAAAATTATAATTTGTTTCCTTCCGAGTTTTTCGTCGCAAGGCGAAGTGAGCAGAAGATGTGAAGGCGTTGCTGAAAACCTCATTCATGAAGCATACTGTATTGTTTTCATTTTCGGAGTAATAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37183</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>348930</contig_pos>
        <strand>+</strand>
        <context>ATAATTTGTT[C/T]CCTTCCGAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTAGTAAGAACACAAACAATTCAAAAAATCGTAAAATTATAATTTGTT</left_flank>
        <right_flank>CCTTCCGAGTTTTTCGTCGCAAGGCGAAGTGAGCAGAAGATGTGAAGGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACATCAAAATTTTCAAAAGTTTTATTTTTTCTCAAAAGAGGTAACTCTAAAGTATAAGTATAGTTTTGTAATTAAAAACCAGAAAAAAAGGCTACACCGACGAAAAAATGCTTTTTTTTCTGACCGTAATTTCCTCACTCGTTTGCTGCAGCGGCGTCGCTTCATAAGACAAATCAACGCGGTCGTCGCCTCTCACACGCGTGGTGTAGTGGGTACGCTCTAGGCTAGCATTCAGAAGGTCGGAGGTTCAATCCCCGCTGATGGTTCCCCTTTTTTCTTATCTTGTCTCTTTTGGATTCAACGTTTGGAACTCAATATTTTTGGAATGGAAGTTTTCGGAACGTCAGCGTGCCGTCAAAGCCTAGCTACGAGATAAGAAACACTGTTGAAAATAATATATGCAGTTTATTATGTCAACAAATAAATTATGCAAAAAATACATTAAATATTTAGTAAGAACACAAACAATTCAAAAAATCGTAAAATTATAATTTGTTTCCTTCCGAGTTTTTCGTCGCAAGGCGAAGTGAGCAGAAGATGTGAAGGCGTTGCTGAAAACCTCATTCATGAAGCATACTGTATTGTTTTCATTTTCGGAGTAATAATGAGACGAAAAAATACCAGTTGAAAGAAAGACGAAACGGCAATCGGAGAAAAAAATTTGTTTTTGCATATTTTTAGAAAAAACCGGCCACTGACAAAATAATCATTCGACTGAACCGGAAATTTACGAAAAAAAATTTATTTTATATGATTTTTACAATAAATTACAAAAAAACCGTTTTTTAAGTTGTAAAGTCGTTTAAAATTTGGAAAAATGAAGTCGGAAAATAAAAAAATAAAAAAATTTTGCGCGTCGGATTGCGTGCTTTAGGTGCGAACACCGCGACGGCAAATCACACGTTCCCTGAAATTTTCCCCGAAAATTTTGCTGTCTGGCCTCCTTTAAGAGTGCCAGGTTTAAAGACAAGTGGAGATATGTCACAACATGTCCATTT</canonical>
            <polymorphic>AGACATCAAAATTTTCAAAAGTTTTATTTTTTCTCAAAAGAGGTAACTCTAAAGTATAAGTATAGTTTTGTAATTAAAAACCAGAAAAAAAGGCTACACCGACGAAAAAATGCTTTTTTTTCTGACCGTAATTTCCTCACTCGTTTGCTGCAGCGGCGTCGCTTCATAAGACAAATCAACGCGGTCGTCGCCTCTCACACGCGTGGTGTAGTGGGTACGCTCTAGGCTAGCATTCAGAAGGTCGGAGGTTCAATCCCCGCTGATGGTTCCCCTTTTTTCTTATCTTGTCTCTTTTGGATTCAACGTTTGGAACTCAATATTTTTGGAATGGAAGTTTTCGGAACGTCAGCGTGCCGTCAAAGCCTAGCTACGAGATAAGAAACACTGTTGAAAATAATATATGCAGTTTATTATGTCAACAAATAAATTATGCAAAAAATACATTAAATATTTAGTAAGAACACAAACAATTCAAAAAATCGTAAAATTATAATTTGTTYCCTTCCGAGTTTTTCGTCGCAAGGCGAAGTGAGCAGAAGATGTGAAGGCGTTGCTGAAAACCTCATTCATGAAGCATACTGTATTGTTTTCATTTTCGGAGTAATAATGAGACGAAAAAATACCAGTTGAAAGAAAGACGAAACGGCAATCGGAGAAAAAAATTTGTTTTTGCATATTTTTAGAAAAAACCGGCCACTGACAAAATAATCATTCGACTGAACCGGAAATTTACGAAAAAAAATTTATTTTATATGATTTTTACAATAAATTACAAAAAAACCGTTTTTTAAGTTGTAAAGTCGTTTAAAATTTGGAAAAATGAAGTCGGAAAATAAAAAAATAAAAAAATTTTGCGCGTCGGATTGCGTGCTTTAGGTGCGAACACCGCGACGGCAAATCACACGTTCCCTGAAATTTTCCCCGAAAATTTTGCTGTCTGGCCTCCTTTAAGAGTGCCAGGTTTAAAGACAAGTGGAGATATGTCACAACATGTCCATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCCTAGCTACGAGATAAGAAAC</pcr_primer_p1>
		<pcr_primer_p2>CATTATTACTCCGAAAATGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGCCTAGCTACGAGATAAGAAACACTGTTGAAAATAATATATGCAGTTTATTATGTCAACAAATAAATTATGCAAAAAATACATTAAATATTTAGTAAGAACACAAACAATTCAAAAAATCGTAAAATTATAATTTGTTTCCTTCCGAGTTTTTCGTCGCAAGGCGAAGTGAGCAGAAGATGTGAAGGCGTTGCTGAAAACCTCATTCATGAAGCATACTGTATTGTTTTCATTTTCGGAGTAATAATG</canonical_amplicon>
		<polymorphic_amplicon>AGCCTAGCTACGAGATAAGAAACACTGTTGAAAATAATATATGCAGTTTATTATGTCAACAAATAAATTATGCAAAAAATACATTAAATATTTAGTAAGAACACAAACAATTCAAAAAATCGTAAAATTATAATTTGTTYCCTTCCGAGTTTTTCGTCGCAAGGCGAAGTGAGCAGAAGATGTGAAGGCGTTGCTGAAAACCTCATTCATGAAGCATACTGTATTGTTTTCATTTTCGGAGTAATAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37184</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>360454</contig_pos>
        <strand>+</strand>
        <context>TGCTTGATCA[A/G]GATATATTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCGCATGGTGGTGGTGGTGGTGGTGGACTGAAAAAGATATGCTTGATCA</left_flank>
        <right_flank>GATATATTTCTAGAGCTTATGATTTCCAAAAGAAATTAAAACTTACGCGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGAGGTCAGGACTAATTTTTGGAGTAGTTCCAAACCCTGCAAGTTTCAGATCAATATGCGAAAGTTGGATTTATTTCAAAATGGGGACCACATTGCTAAACAGGTGAATTGAATTGAGAACGATTGGAAGGATGATGAGGAAGGGGGAAAATGTTGTCATAGATGTACAGACACATAAGTGACAGTAAGGGGGGAAATAAATTGAAAATTAAAAGGTATGATTCCTAGTCGTCTTGTTCACACTGTTTACTTGCGTCCAGCGGTGGCGTATCCGGCTGGTGGTGGTGGTGGGGCGGCGTAAGAGGCAGCTGGTGGTGGAGCAGCGTAGGCTGGAGCTGGGGCGGCTCCGCATCCTCCTCCGCAACCGCCTCCTCCGAAGGATGGAAGGGAGAGTCTTGGAAGCTCGAATCTTGGGAGTTGGAGTGGTGGAAGTCCTCCTCCTCCGCATCCGCATGGTGGTGGTGGTGGTGGTGGACTGAAAAAGATATGCTTGATCAAGATATATTTCTAGAGCTTATGATTTCCAAAAGAAATTAAAACTTACGCGCATCCACATCCTCCTCCTCCGGATGGAAGAAGGAAGGCCTGAGCGACGGCGATGGTTGTGAAGAAAAGAACGATCTTTTGCATGTTGAAGAAAGTTGTTGAAAGTCGAAGACTATACTTTTTCCAGCCTCGACTCGAGCCTTTTATACGACGGGTGATATCATTGGCAAAACCTGAACAGTGGGTGGTGCCGAAATAGTGTGCATTCTTTAGAGAGTACCTCCCAAACGATGCTACAACTTTTGAAACAATACTCTGAAGACAGACTCCGCCTCTTTTGTAGGGAGACGACAGACACTGACACCTGTACACGTAATTTTTTCGGCGAAAGCTTATCGTCGCCGATAATTCATCACATTCTGGCTTTCTGTATCTTGCGTTTAGGTGTCTACGGGACACACATCAGACACGTTTCGTTACGCAAGCGTTTTCTCTTAACGACTCCTGACGAA</canonical>
            <polymorphic>TTGGAGGTCAGGACTAATTTTTGGAGTAGTTCCAAACCCTGCAAGTTTCAGATCAATATGCGAAAGTTGGATTTATTTCAAAATGGGGACCACATTGCTAAACAGGTGAATTGAATTGAGAACGATTGGAAGGATGATGAGGAAGGGGGAAAATGTTGTCATAGATGTACAGACACATAAGTGACAGTAAGGGGGGAAATAAATTGAAAATTAAAAGGTATGATTCCTAGTCGTCTTGTTCACACTGTTTACTTGCGTCCAGCGGTGGCGTATCCGGCTGGTGGTGGTGGTGGGGCGGCGTAAGAGGCAGCTGGTGGTGGAGCAGCGTAGGCTGGAGCTGGGGCGGCTCCGCATCCTCCTCCGCAACCGCCTCCTCCGAAGGATGGAAGGGAGAGTCTTGGAAGCTCGAATCTTGGGAGTTGGAGTGGTGGAAGTCCTCCTCCTCCGCATCCGCATGGTGGTGGTGGTGGTGGTGGACTGAAAAAGATATGCTTGATCARGATATATTTCTAGAGCTTATGATTTCCAAAAGAAATTAAAACTTACGCGCATCCACATCCTCCTCCTCCGGATGGAAGAAGGAAGGCCTGAGCGACGGCGATGGTTGTGAAGAAAAGAACGATCTTTTGCATGTTGAAGAAAGTTGTTGAAAGTCGAAGACTATACTTTTTCCAGCCTCGACTCGAGCCTTTTATACGACGGGTGATATCATTGGCAAAACCTGAACAGTGGGTGGTGCCGAAATAGTGTGCATTCTTTAGAGAGTACCTCCCAAACGATGCTACAACTTTTGAAACAATACTCTGAAGACAGACTCCGCCTCTTTTGTAGGGAGACGACAGACACTGACACCTGTACACGTAATTTTTTCGGCGAAAGCTTATCGTCGCCGATAATTCATCACATTCTGGCTTTCTGTATCTTGCGTTTAGGTGTCTACGGGACACACATCAGACACGTTTCGTTACGCAAGCGTTTTCTCTTAACGACTCCTGACGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCTTGGAAGCTCGAATCT</pcr_primer_p1>
		<pcr_primer_p2>AACTTTCTTCAACATGCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGTCTTGGAAGCTCGAATCTTGGGAGTTGGAGTGGTGGAAGTCCTCCTCCTCCGCATCCGCATGGTGGTGGTGGTGGTGGTGGACTGAAAAAGATATGCTTGATCAAGATATATTTCTAGAGCTTATGATTTCCAAAAGAAATTAAAACTTACGCGCATCCACATCCTCCTCCTCCGGATGGAAGAAGGAAGGCCTGAGCGACGGCGATGGTTGTGAAGAAAAGAACGATCTTTTGCATGTTGAAGAAAGTT</canonical_amplicon>
		<polymorphic_amplicon>AGTCTTGGAAGCTCGAATCTTGGGAGTTGGAGTGGTGGAAGTCCTCCTCCTCCGCATCCGCATGGTGGTGGTGGTGGTGGTGGACTGAAAAAGATATGCTTGATCARGATATATTTCTAGAGCTTATGATTTCCAAAAGAAATTAAAACTTACGCGCATCCACATCCTCCTCCTCCGGATGGAAGAAGGAAGGCCTGAGCGACGGCGATGGTTGTGAAGAAAAGAACGATCTTTTGCATGTTGAAGAAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37185</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>368760</contig_pos>
        <strand>+</strand>
        <context>TTATAGTTCG[A/T]TTTTTTTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAGTACCAATCAATTTTACTACCAACACACCCAGTTTTGTTATAGTTCG</left_flank>
        <right_flank>TTTTTTTTCGGGAGGGTCCCGCTTGTAGTAAACCATCTGCAGCCTCGTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTGTGTTCTTTTATCCTCTGTTTCTATTCCTTGCCTTCTGATGTATGTTCTGATAATTGTTATCACTTTTCTAATTTCTATTGTACTGATTCCAGAAAGTTCTGATTTCGGTTAAACCAACCAGGAACTATTTCTGAAGATCCCCAAATAAAATATTTTCCATATATTTTAAAACCAAAGTATTCAGCATTTAGAGACATCATTATCTCTAGAGTGATTGATAGCAGAAAATCAATCAAGGCAATTTAAAATTTCAATTAATCACCCAACCCGACGTCTGCGACTTATCACATACCAGTAAAACTGTTTATGTTTCAACCGTAAACTTTCACTTTCCTCTAGCCATCATCTTCTGAACGTCCACATATTTACCTAACCCAGTAACCCTCTGATGTCCTTGAGACTCCCAGTTGTAAACCATCCAACAGAATGCCGACAGACGGAGAAAGAGTACCAATCAATTTTACTACCAACACACCCAGTTTTGTTATAGTTCGTTTTTTTTTCGGGAGGGTCCCGCTTGTAGTAAACCATCTGCAGCCTCGTAGAAATAGAGACTCAGACGACATGAAACAGTTTTGCGTTGTAACAGAGGAAGAGAGCATCAGACCCACGCTAGTGACACTTTTGTGCTGCGTGTGTCCGGACTTTTTGTATCAATCATGCTCTCAGTATCCCCATGTTTCACTTTGTCTGCTTTTTCACTTTATCAAAGTCATGTGACACCATCCGTCACCATACGTTGTCCTGCCCGGCAGGTCTAGGCGCGCCCTTGGTTGCAAAGAATTCGTTTCGTTTCAATCGGGATTCACACTATAACATTTTTCGTGTAGCTGGTTTTTGACATTTTTTCTTGTTCCGGGATTATGAATGTTCGTTTTGACTCAAAACTTTTGAGCTCTTGAAAGGAAAATTAGTTTTTGAGATCATGAAGCGTTTAATTTTCAAGCCAGTGACGCCAAGGCTGTGCCACGGCCGGCTGCGGCATTCTGAAAAGG</canonical>
            <polymorphic>ACCTGTGTTCTTTTATCCTCTGTTTCTATTCCTTGCCTTCTGATGTATGTTCTGATAATTGTTATCACTTTTCTAATTTCTATTGTACTGATTCCAGAAAGTTCTGATTTCGGTTAAACCAACCAGGAACTATTTCTGAAGATCCCCAAATAAAATATTTTCCATATATTTTAAAACCAAAGTATTCAGCATTTAGAGACATCATTATCTCTAGAGTGATTGATAGCAGAAAATCAATCAAGGCAATTTAAAATTTCAATTAATCACCCAACCCGACGTCTGCGACTTATCACATACCAGTAAAACTGTTTATGTTTCAACCGTAAACTTTCACTTTCCTCTAGCCATCATCTTCTGAACGTCCACATATTTACCTAACCCAGTAACCCTCTGATGTCCTTGAGACTCCCAGTTGTAAACCATCCAACAGAATGCCGACAGACGGAGAAAGAGTACCAATCAATTTTACTACCAACACACCCAGTTTTGTTATAGTTCGWTTTTTTTTCGGGAGGGTCCCGCTTGTAGTAAACCATCTGCAGCCTCGTAGAAATAGAGACTCAGACGACATGAAACAGTTTTGCGTTGTAACAGAGGAAGAGAGCATCAGACCCACGCTAGTGACACTTTTGTGCTGCGTGTGTCCGGACTTTTTGTATCAATCATGCTCTCAGTATCCCCATGTTTCACTTTGTCTGCTTTTTCACTTTATCAAAGTCATGTGACACCATCCGTCACCATACGTTGTCCTGCCCGGCAGGTCTAGGCGCGCCCTTGGTTGCAAAGAATTCGTTTCGTTTCAATCGGGATTCACACTATAACATTTTTCGTGTAGCTGGTTTTTGACATTTTTTCTTGTTCCGGGATTATGAATGTTCGTTTTGACTCAAAACTTTTGAGCTCTTGAAAGGAAAATTAGTTTTTGAGATCATGAAGCGTTTAATTTTCAAGCCAGTGACGCCAAGGCTGTGCCACGGCCGGCTGCGGCATTCTGAAAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACGTCCACATATTTACCTAACC</pcr_primer_p1>
		<pcr_primer_p2>ATGCTCTCTTCCTCTGTTACAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACGTCCACATATTTACCTAACCCAGTAACCCTCTGATGTCCTTGAGACTCCCAGTTGTAAACCATCCAACAGAATGCCGACAGACGGAGAAAGAGTACCAATCAATTTTACTACCAACACACCCAGTTTTGTTATAGTTCGTTTTTTTTTCGGGAGGGTCCCGCTTGTAGTAAACCATCTGCAGCCTCGTAGAAATAGAGACTCAGACGACATGAAACAGTTTTGCGTTGTAACAGAGGAAGAGAGCAT</canonical_amplicon>
		<polymorphic_amplicon>AACGTCCACATATTTACCTAACCCAGTAACCCTCTGATGTCCTTGAGACTCCCAGTTGTAAACCATCCAACAGAATGCCGACAGACGGAGAAAGAGTACCAATCAATTTTACTACCAACACACCCAGTTTTGTTATAGTTCGWTTTTTTTTCGGGAGGGTCCCGCTTGTAGTAAACCATCTGCAGCCTCGTAGAAATAGAGACTCAGACGACATGAAACAGTTTTGCGTTGTAACAGAGGAAGAGAGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37186</snp_id>
        <super_contig>c011900885.Contig3</super_contig>
        <contig_pos>370731</contig_pos>
        <strand>+</strand>
        <context>GTTTTAGAGT[A/G]AGACCGCTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGT</left_flank>
        <right_flank>AGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACAC</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAAATGTTTCAATTTCCAAATCACCCAATATACTAGACAAGTAACGAATTCCGATTGCGTACCCAGCTGCAGCCTGAACTTCCTATTGAAATTCGGTACACCTACCATATTCCTCATACATTATTGTTTCCCACATTACAAAAGCCTCATTTCATTACACCCCTGTCGCATTCGACGATCATATTAATTCAAAACGTCCAATCTCAAAGTTCAAGTGGCATCCGCCCCTCGAAAAACCATAATCCTTACCATCGTCGCCAAGTTCCCACGACTAAGGGCACCTACAAAGTGCATATTTGGCCCCAAAAAAATTTTTTCTCGACGC</canonical>
            <polymorphic>CCATGATTATTCATGAATATTCTCCATATACCTCTGTGGCCCCCCGTCGTCCGTCCGTCGGCCGTCCCACCCCATTCCCAGCCAACTCTAGTTTTTTTGCCTCCTCCCTCTGGTATTTTGCAATCTCTAGAATTTTCCTTTTTTCGAAAGTGTATGATGAAAAGTTGTTGAACATTGTCTAAATTGTTCAGAAAGTGCATTTCTCAATTTGAGCCAATTTGCCTTGGTAGACGAATGAAAAGTTTGCAAATACAAAATTCCACTTTGTTTCACTGTTTCTAGAAATTTTTTGTAGAACCTTCTTATATGGTTAGGAAAATCCTGTTTACCTATGGTCTTGTTCCAAGCACAGCATATAATAACGCAGCCGGTAAATAATTTATAGGTTCGGTACCTTAAGGAATAGCTTTTCGGCTTTTAGGATTAATGGGACCATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTRAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAAATGTTTCAATTTCCAAATCACCCAATATACTAGACAAGTAACGAATTCCGATTGCGTACCCAGCTGCAGCCTGAACTTCCTATTGAAATTCGGTACACCTACCATATTCCTCATACATTATTGTTTCCCACATTACAAAAGCCTCATTTCATTACACCCCTGTCGCATTCGACGATCATATTAATTCAAAACGTCCAATCTCAAAGTTCAAGTGGCATCCGCCCCTCGAAAAACCATAATCCTTACCATCGTCGCCAAGTTCCCACGACTAAGGGCACCTACAAAGTGCATATTTGGCCCCAAAAAAATTTTTTCTCGACGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTCTTGTTATCCTCGACTTAT</pcr_primer_p1>
		<pcr_primer_p2>TTCAACCTAAAATACTCCAAATG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTAAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAA</canonical_amplicon>
		<polymorphic_amplicon>CATTCTTGTTATCCTCGACTTATATTAAAAGGTACTTTCATTTATGCTCCTTTTATGTTTTAGAGTRAGACCGCTGAATAACGCTGAAGAGCTTGGCTTTTAATGTACCGTATACACTCTGATAGAAGACCCTACACTTAAACTTTGAGCTCAAGGATCTCAATTTTTCTCAAGTACTTCAAAAATACTGTGGCCTTCTGTTAGTGTTTACTTGGCGCTTTCCATTTGGAGTATTTTAGGTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37187</snp_id>
        <super_contig>c011901131.Contig1</super_contig>
        <contig_pos>33422</contig_pos>
        <strand>+</strand>
        <context>TCTGGAAGCT[C/T]CGTTTTTGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGTGGTTTATGGAAACGAAGAAAAACACTTTGGAATTTTCTGGAAGCT</left_flank>
        <right_flank>CGTTTTTGTCGGAGGGTTTTTGATGATATTTTATGCGTATGTTTGGAATT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTGAAAGTCGATGGAAAAATCCTGAATGTTTGCATTTTCTATCAAATTTTTGAGTAATTTTGTTTAAAAAAATCAAATTATTTTTTAAACACTTTTCGATTATAAATCTGCAAAAAAACGCTCAAAATTCACGAAAACCCGAAAAAATAAATAATTTTAAACTACAGTAGTCAAAGGCGCACTCTCAAAAACAGGTTTACTGGTTTGGCAGCGAATAATAAAAAGTGTGTTTTTGAAAAGTTTTTGCATTGATTTACACCAATTTTAGGATTTTTTCGTCATTTTTTCTTAGATTTTGGGCATAAATACTAAGTTAGAATTTAAAAATGTATTGTTTTTTTTCCAGATAAACCGCTGCTGAAGTCGACAAAAATGACAGAAAATAGAGAGGAGAAGAAGTTTGTGATCAAGCATGTTTTTGAAAATGTTACAAAACTACAAAATGATAAAGTGGTTTATGGAAACGAAGAAAAACACTTTGGAATTTTCTGGAAGCTTCGTTTTTGTCGGAGGGTTTTTGATGATATTTTATGCGTATGTTTGGAATTTCGAAAATCGGAAGACGTTGTCGGAAGCGAATGGTCGATAGAATTCGAAGTGGACTCAGATTTCTACAAACCTCATGTGTTTAGGAATAAAAAATACTTGATTTCCGGAACGTCTGAAAAAGTTATTTGTATGGTTCAGATTAACTACAGTAACCTGCAACAATATCTAATCAACGTAAGCCTTGAGGCAGAATTCCAAGTGATCATCAAGAAAATGACAGGATTCGAAATTCCGAAATTCAGAATTTTTGATGATGACGTGGCGAAGAAGTTCTCAGATGTCTGTTTGTTGGCTGGAAATCAAAAATTCTATGTCTCAAAATTATTCATGGCTTCTCATTCCACCTATTTCGAATCTCTATTTCTCGGAAATTTCTCGGAATCTAAAAAATCTGAAATCGAATTGAAGGATGTCGATCCGAAAGATTTACAGAAGTTTCTAGAAGTTCT</canonical>
            <polymorphic>TACTGAAAGTCGATGGAAAAATCCTGAATGTTTGCATTTTCTATCAAATTTTTGAGTAATTTTGTTTAAAAAAATCAAATTATTTTTTAAACACTTTTCGATTATAAATCTGCAAAAAAACGCTCAAAATTCACGAAAACCCGAAAAAATAAATAATTTTAAACTACAGTAGTCAAAGGCGCACTCTCAAAAACAGGTTTACTGGTTTGGCAGCGAATAATAAAAAGTGTGTTTTTGAAAAGTTTTTGCATTGATTTACACCAATTTTAGGATTTTTTCGTCATTTTTTCTTAGATTTTGGGCATAAATACTAAGTTAGAATTTAAAAATGTATTGTTTTTTTTCCAGATAAACCGCTGCTGAAGTCGACAAAAATGACAGAAAATAGAGAGGAGAAGAAGTTTGTGATCAAGCATGTTTTTGAAAATGTTACAAAACTACAAAATGATAAAGTGGTTTATGGAAACGAAGAAAAACACTTTGGAATTTTCTGGAAGCTYCGTTTTTGTCGGAGGGTTTTTGATGATATTTTATGCGTATGTTTGGAATTTCGAAAATCGGAAGACGTTGTCGGAAGCGAATGGTCGATAGAATTCGAAGTGGACTCAGATTTCTACAAACCTCATGTGTTTAGGAATAAAAAATACTTGATTTCCGGAACGTCTGAAAAAGTTATTTGTATGGTTCAGATTAACTACAGTAACCTGCAACAATATCTAATCAACGTAAGCCTTGAGGCAGAATTCCAAGTGATCATCAAGAAAATGACAGGATTCGAAATTCCGAAATTCAGAATTTTTGATGATGACGTGGCGAAGAAGTTCTCAGATGTCTGTTTGTTGGCTGGAAATCAAAAATTCTATGTCTCAAAATTATTCATGGCTTCTCATTCCACCTATTTCGAATCTCTATTTCTCGGAAATTTCTCGGAATCTAAAAAATCTGAAATCGAATTGAAGGATGTCGATCCGAAAGATTTACAGAAGTTTCTAGAAGTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCATGTTTTTGAAAATGTTAC</pcr_primer_p1>
		<pcr_primer_p2>TTCCGGAAATCAAGTATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGCATGTTTTTGAAAATGTTACAAAACTACAAAATGATAAAGTGGTTTATGGAAACGAAGAAAAACACTTTGGAATTTTCTGGAAGCTTCGTTTTTGTCGGAGGGTTTTTGATGATATTTTATGCGTATGTTTGGAATTTCGAAAATCGGAAGACGTTGTCGGAAGCGAATGGTCGATAGAATTCGAAGTGGACTCAGATTTCTACAAACCTCATGTGTTTAGGAATAAAAAATACTTGATTTCCGGAA</canonical_amplicon>
		<polymorphic_amplicon>AAGCATGTTTTTGAAAATGTTACAAAACTACAAAATGATAAAGTGGTTTATGGAAACGAAGAAAAACACTTTGGAATTTTCTGGAAGCTYCGTTTTTGTCGGAGGGTTTTTGATGATATTTTATGCGTATGTTTGGAATTTCGAAAATCGGAAGACGTTGTCGGAAGCGAATGGTCGATAGAATTCGAAGTGGACTCAGATTTCTACAAACCTCATGTGTTTAGGAATAAAAAATACTTGATTTCCGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37188</snp_id>
        <super_contig>c011901131.Contig1</super_contig>
        <contig_pos>33536</contig_pos>
        <strand>+</strand>
        <context>ACTCAGATTT[C/T]TACAAACCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACGTTGTCGGAAGCGAATGGTCGATAGAATTCGAAGTGGACTCAGATTT</left_flank>
        <right_flank>TACAAACCTCATGTGTTTAGGAATAAAAAATACTTGATTTCCGGAACGTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAACGCTCAAAATTCACGAAAACCCGAAAAAATAAATAATTTTAAACTACAGTAGTCAAAGGCGCACTCTCAAAAACAGGTTTACTGGTTTGGCAGCGAATAATAAAAAGTGTGTTTTTGAAAAGTTTTTGCATTGATTTACACCAATTTTAGGATTTTTTCGTCATTTTTTCTTAGATTTTGGGCATAAATACTAAGTTAGAATTTAAAAATGTATTGTTTTTTTTCCAGATAAACCGCTGCTGAAGTCGACAAAAATGACAGAAAATAGAGAGGAGAAGAAGTTTGTGATCAAGCATGTTTTTGAAAATGTTACAAAACTACAAAATGATAAAGTGGTTTATGGAAACGAAGAAAAACACTTTGGAATTTTCTGGAAGCTTCGTTTTTGTCGGAGGGTTTTTGATGATATTTTATGCGTATGTTTGGAATTTCGAAAATCGGAAGACGTTGTCGGAAGCGAATGGTCGATAGAATTCGAAGTGGACTCAGATTTCTACAAACCTCATGTGTTTAGGAATAAAAAATACTTGATTTCCGGAACGTCTGAAAAAGTTATTTGTATGGTTCAGATTAACTACAGTAACCTGCAACAATATCTAATCAACGTAAGCCTTGAGGCAGAATTCCAAGTGATCATCAAGAAAATGACAGGATTCGAAATTCCGAAATTCAGAATTTTTGATGATGACGTGGCGAAGAAGTTCTCAGATGTCTGTTTGTTGGCTGGAAATCAAAAATTCTATGTCTCAAAATTATTCATGGCTTCTCATTCCACCTATTTCGAATCTCTATTTCTCGGAAATTTCTCGGAATCTAAAAAATCTGAAATCGAATTGAAGGATGTCGATCCGAAAGATTTACAGAAGTTTCTAGAAGTTCTATATGGAGAATCTGCAATTGACGACGATACTGTAGAGGGGATTCTGAAATTGGCTGATATGTACGACGCGAAAACTGCAATCAGAAGATGCGAGGAATTTTTATTGGAAAAATC</canonical>
            <polymorphic>AAAAAACGCTCAAAATTCACGAAAACCCGAAAAAATAAATAATTTTAAACTACAGTAGTCAAAGGCGCACTCTCAAAAACAGGTTTACTGGTTTGGCAGCGAATAATAAAAAGTGTGTTTTTGAAAAGTTTTTGCATTGATTTACACCAATTTTAGGATTTTTTCGTCATTTTTTCTTAGATTTTGGGCATAAATACTAAGTTAGAATTTAAAAATGTATTGTTTTTTTTCCAGATAAACCGCTGCTGAAGTCGACAAAAATGACAGAAAATAGAGAGGAGAAGAAGTTTGTGATCAAGCATGTTTTTGAAAATGTTACAAAACTACAAAATGATAAAGTGGTTTATGGAAACGAAGAAAAACACTTTGGAATTTTCTGGAAGCTTCGTTTTTGTCGGAGGGTTTTTGATGATATTTTATGCGTATGTTTGGAATTTCGAAAATCGGAAGACGTTGTCGGAAGCGAATGGTCGATAGAATTCGAAGTGGACTCAGATTTYTACAAACCTCATGTGTTTAGGAATAAAAAATACTTGATTTCCGGAACGTCTGAAAAAGTTATTTGTATGGTTCAGATTAACTACAGTAACCTGCAACAATATCTAATCAACGTAAGCCTTGAGGCAGAATTCCAAGTGATCATCAAGAAAATGACAGGATTCGAAATTCCGAAATTCAGAATTTTTGATGATGACGTGGCGAAGAAGTTCTCAGATGTCTGTTTGTTGGCTGGAAATCAAAAATTCTATGTCTCAAAATTATTCATGGCTTCTCATTCCACCTATTTCGAATCTCTATTTCTCGGAAATTTCTCGGAATCTAAAAAATCTGAAATCGAATTGAAGGATGTCGATCCGAAAGATTTACAGAAGTTTCTAGAAGTTCTATATGGAGAATCTGCAATTGACGACGATACTGTAGAGGGGATTCTGAAATTGGCTGATATGTACGACGCGAAAACTGCAATCAGAAGATGCGAGGAATTTTTATTGGAAAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGATGATATTTTATGCGTATG</pcr_primer_p1>
		<pcr_primer_p2>TCATTTTCTTGATGATCACTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGATGATATTTTATGCGTATGTTTGGAATTTCGAAAATCGGAAGACGTTGTCGGAAGCGAATGGTCGATAGAATTCGAAGTGGACTCAGATTTCTACAAACCTCATGTGTTTAGGAATAAAAAATACTTGATTTCCGGAACGTCTGAAAAAGTTATTTGTATGGTTCAGATTAACTACAGTAACCTGCAACAATATCTAATCAACGTAAGCCTTGAGGCAGAATTCCAAGTGATCATCAAGAAAATGA</canonical_amplicon>
		<polymorphic_amplicon>TTTGATGATATTTTATGCGTATGTTTGGAATTTCGAAAATCGGAAGACGTTGTCGGAAGCGAATGGTCGATAGAATTCGAAGTGGACTCAGATTTYTACAAACCTCATGTGTTTAGGAATAAAAAATACTTGATTTCCGGAACGTCTGAAAAAGTTATTTGTATGGTTCAGATTAACTACAGTAACCTGCAACAATATCTAATCAACGTAAGCCTTGAGGCAGAATTCCAAGTGATCATCAAGAAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37189</snp_id>
        <super_contig>c011901131.Contig1</super_contig>
        <contig_pos>33776</contig_pos>
        <strand>+</strand>
        <context>CTGGAAATCA[A/G]AAATTCTATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATGACGTGGCGAAGAAGTTCTCAGATGTCTGTTTGTTGGCTGGAAATCA</left_flank>
        <right_flank>AAATTCTATGTCTCAAAATTATTCATGGCTTCTCATTCCACCTATTTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCTGCTGAAGTCGACAAAAATGACAGAAAATAGAGAGGAGAAGAAGTTTGTGATCAAGCATGTTTTTGAAAATGTTACAAAACTACAAAATGATAAAGTGGTTTATGGAAACGAAGAAAAACACTTTGGAATTTTCTGGAAGCTTCGTTTTTGTCGGAGGGTTTTTGATGATATTTTATGCGTATGTTTGGAATTTCGAAAATCGGAAGACGTTGTCGGAAGCGAATGGTCGATAGAATTCGAAGTGGACTCAGATTTCTACAAACCTCATGTGTTTAGGAATAAAAAATACTTGATTTCCGGAACGTCTGAAAAAGTTATTTGTATGGTTCAGATTAACTACAGTAACCTGCAACAATATCTAATCAACGTAAGCCTTGAGGCAGAATTCCAAGTGATCATCAAGAAAATGACAGGATTCGAAATTCCGAAATTCAGAATTTTTGATGATGACGTGGCGAAGAAGTTCTCAGATGTCTGTTTGTTGGCTGGAAATCAAAAATTCTATGTCTCAAAATTATTCATGGCTTCTCATTCCACCTATTTCGAATCTCTATTTCTCGGAAATTTCTCGGAATCTAAAAAATCTGAAATCGAATTGAAGGATGTCGATCCGAAAGATTTACAGAAGTTTCTAGAAGTTCTATATGGAGAATCTGCAATTGACGACGATACTGTAGAGGGGATTCTGAAATTGGCTGATATGTACGACGCGAAAACTGCAATCAGAAGATGCGAGGAATTTTTATTGGAAAAATCGAAAAAATCGATGAAAATCAAATTCACATGTGCAGTGAGATACAAGTTGGATGCCTTGAAGGTGAGAGCAAAAATCGATAATTTTCCTCAAAAAAATGTTTTAAAATTTCAGAAAAAGTGTCTGTCGGAACTGAAAACCACCGCTGAAATTCGTGAATTGGTTCCAGAAAATGCTCATGATTTCGGGCCAGATGTCTGGAAAGAGCTCTTCTTAAAAGCCTATTCTGCTCTATAAATGAT</canonical>
            <polymorphic>CGCTGCTGAAGTCGACAAAAATGACAGAAAATAGAGAGGAGAAGAAGTTTGTGATCAAGCATGTTTTTGAAAATGTTACAAAACTACAAAATGATAAAGTGGTTTATGGAAACGAAGAAAAACACTTTGGAATTTTCTGGAAGCTTCGTTTTTGTCGGAGGGTTTTTGATGATATTTTATGCGTATGTTTGGAATTTCGAAAATCGGAAGACGTTGTCGGAAGCGAATGGTCGATAGAATTCGAAGTGGACTCAGATTTCTACAAACCTCATGTGTTTAGGAATAAAAAATACTTGATTTCCGGAACGTCTGAAAAAGTTATTTGTATGGTTCAGATTAACTACAGTAACCTGCAACAATATCTAATCAACGTAAGCCTTGAGGCAGAATTCCAAGTGATCATCAAGAAAATGACAGGATTCGAAATTCCGAAATTCAGAATTTTTGATGATGACGTGGCGAAGAAGTTCTCAGATGTCTGTTTGTTGGCTGGAAATCARAAATTCTATGTCTCAAAATTATTCATGGCTTCTCATTCCACCTATTTCGAATCTCTATTTCTCGGAAATTTCTCGGAATCTAAAAAATCTGAAATCGAATTGAAGGATGTCGATCCGAAAGATTTACAGAAGTTTCTAGAAGTTCTATATGGAGAATCTGCAATTGACGACGATACTGTAGAGGGGATTCTGAAATTGGCTGATATGTACGACGCGAAAACTGCAATCAGAAGATGCGAGGAATTTTTATTGGAAAAATCGAAAAAATCGATGAAAATCAAATTCACATGTGCAGTGAGATACAAGTTGGATGCCTTGAAGGTGAGAGCAAAAATCGATAATTTTCCTCAAAAAAATGTTTTAAAATTTCAGAAAAAGTGTCTGTCGGAACTGAAAACCACCGCTGAAATTCGTGAATTGGTTCCAGAAAATGCTCATGATTTCGGGCCAGATGTCTGGAAAGAGCTCTTCTTAAAAGCCTATTCTGCTCTATAAATGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAAAGTTATTTGTATGGTTCA</pcr_primer_p1>
		<pcr_primer_p2>AATAGAGATTCGAAATAGGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAAAAAGTTATTTGTATGGTTCAGATTAACTACAGTAACCTGCAACAATATCTAATCAACGTAAGCCTTGAGGCAGAATTCCAAGTGATCATCAAGAAAATGACAGGATTCGAAATTCCGAAATTCAGAATTTTTGATGATGACGTGGCGAAGAAGTTCTCAGATGTCTGTTTGTTGGCTGGAAATCAAAAATTCTATGTCTCAAAATTATTCATGGCTTCTCATTCCACCTATTTCGAATCTCTATT</canonical_amplicon>
		<polymorphic_amplicon>TGAAAAAGTTATTTGTATGGTTCAGATTAACTACAGTAACCTGCAACAATATCTAATCAACGTAAGCCTTGAGGCAGAATTCCAAGTGATCATCAAGAAAATGACAGGATTCGAAATTCCGAAATTCAGAATTTTTGATGATGACGTGGCGAAGAAGTTCTCAGATGTCTGTTTGTTGGCTGGAAATCARAAATTCTATGTCTCAAAATTATTCATGGCTTCTCATTCCACCTATTTCGAATCTCTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37190</snp_id>
        <super_contig>c011901131.Contig1</super_contig>
        <contig_pos>38446</contig_pos>
        <strand>+</strand>
        <context>CCAATTTTGA[C/T]ACCAATCGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGCCACGTCATCATCGAAAATTCTCGATTTTTCTTTTCCAATTTTGA</left_flank>
        <right_flank>ACCAATCGATTTTTCCGTATCGATTTCTACGAGAAATTCAATTTCAGCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATTGGAGAAAATTAGCATTAGAGCGAATTTGCATCATTTCATCACCTTTAAATTCTCCAAATTATACATTGCGGCAGCTGTGAGCTTGTCTTTTATCGATTTTTTGGAATCGGCGAGGAGAAATTTTTCGCATTGGCGATTTGCGGTTTTCACATCGTACATGTCCGCTAGTTTCAGAATTTCGTCGACGGTTTCGTCTGGAAATTTTGAAAAAAATTTTTTTTTTCAAAATTTTATTTTACCATTCAAAACCGATTCTCCATACAAAAATTCCAGAAAAATCTGAAATTCGTGCGGATCGATATCCTTCAACTCGATTATCGATTTTTCGGATTCGACGAATTTTCCCTAAAACAACGTTTTAAAATATGCGATTGTGATGCTAGTGTCAACTTCGACACATAGAATTTACGCTGAGCAATCGTCAGAACGACATCTGAAACCTCTTTTGCCACGTCATCATCGAAAATTCTCGATTTTTCTTTTCCAATTTTGATACCAATCGATTTTTCCGTATCGATTTCTACGAGAAATTCAATTTCAGCACTTCCATTTTTCAGATAATTCGAATTCTGCGACCAATATTCTAAAATTGCCAATTTCGAATTTTCGATTTTCGTAAAATCATGAAAAAAGATTTGCTCCTTTCCGTTGAATTTGAATTTCCCGCCTGTGGAAATCAGCGATTCCGGATTATCGATTTTTTCCAGACAATCCAGATAGGCCTTGAGTTTTTGGTCTTTTCGAAGCAAGCGGATTTTCCTGAAAAATTTTTTTTGGCCTAAAAAATTTGAATTACTTGAATATCGATTTTTCGAAAATATCGATTTTCGGCCCTACCACGACATCCCTAGATGATCCTCGACGTCTCCACACTTTTCTGTGTCTATTTCCATTTTTTCGACATTTTCGAATAATTTTTTGATTACGAAGCTTTTTTTGGGCATTTTTTAGCTGAAAAATGGCAGTTTTAGCAGGAAATTGCGAGAAAACCAGC</canonical>
            <polymorphic>AAAATTGGAGAAAATTAGCATTAGAGCGAATTTGCATCATTTCATCACCTTTAAATTCTCCAAATTATACATTGCGGCAGCTGTGAGCTTGTCTTTTATCGATTTTTTGGAATCGGCGAGGAGAAATTTTTCGCATTGGCGATTTGCGGTTTTCACATCGTACATGTCCGCTAGTTTCAGAATTTCGTCGACGGTTTCGTCTGGAAATTTTGAAAAAAATTTTTTTTTTCAAAATTTTATTTTACCATTCAAAACCGATTCTCCATACAAAAATTCCAGAAAAATCTGAAATTCGTGCGGATCGATATCCTTCAACTCGATTATCGATTTTTCGGATTCGACGAATTTTCCCTAAAACAACGTTTTAAAATATGCGATTGTGATGCTAGTGTCAACTTCGACACATAGAATTTACGCTGAGCAATCGTCAGAACGACATCTGAAACCTCTTTTGCCACGTCATCATCGAAAATTCTCGATTTTTCTTTTCCAATTTTGAYACCAATCGATTTTTCCGTATCGATTTCTACGAGAAATTCAATTTCAGCACTTCCATTTTTCAGATAATTCGAATTCTGCGACCAATATTCTAAAATTGCCAATTTCGAATTTTCGATTTTCGTAAAATCATGAAAAAAGATTTGCTCCTTTCCGTTGAATTTGAATTTCCCGCCTGTGGAAATCAGCGATTCCGGATTATCGATTTTTTCCAGACAATCCAGATAGGCCTTGAGTTTTTGGTCTTTTCGAAGCAAGCGGATTTTCCTGAAAAATTTTTTTTGGCCTAAAAAATTTGAATTACTTGAATATCGATTTTTCGAAAATATCGATTTTCGGCCCTACCACGACATCCCTAGATGATCCTCGACGTCTCCACACTTTTCTGTGTCTATTTCCATTTTTTCGACATTTTCGAATAATTTTTTGATTACGAAGCTTTTTTTGGGCATTTTTTAGCTGAAAAATGGCAGTTTTAGCAGGAAATTGCGAGAAAACCAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATNNNNATC</site>
                <isoschizomers>
                    <enzyme>BsaBI</enzyme>
                    <enzyme>Bse8I</enzyme>
                    <enzyme>BseJI</enzyme>
                    <enzyme>BsiBI</enzyme>
                    <enzyme>BsrBRI</enzyme>
                    <enzyme>MamI</enzyme>
                </isoschizomers>
                <canonical_bands>498 304 198</canonical_bands>
                <polymorphic_bands>696 304</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTAAAATATGCGATTGTGAT</pcr_primer_p1>
		<pcr_primer_p2>TTTAGAATATTGGTCGCAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>GTTTTAAAATATGCGATTGTGATGCTAGTGTCAACTTCGACACATAGAATTTACGCTGAGCAATCGTCAGAACGACATCTGAAACCTCTTTTGCCACGTCATCATCGAAAATTCTCGATTTTTCTTTTCCAATTTTGATACCAATCGATTTTTCCGTATCGATTTCTACGAGAAATTCAATTTCAGCACTTCCATTTTTCAGATAATTCGAATTCTGCGACCAATATTCTAAA</canonical_amplicon>
		<polymorphic_amplicon>GTTTTAAAATATGCGATTGTGATGCTAGTGTCAACTTCGACACATAGAATTTACGCTGAGCAATCGTCAGAACGACATCTGAAACCTCTTTTGCCACGTCATCATCGAAAATTCTCGATTTTTCTTTTCCAATTTTGAYACCAATCGATTTTTCCGTATCGATTTCTACGAGAAATTCAATTTCAGCACTTCCATTTTTCAGATAATTCGAATTCTGCGACCAATATTCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37191</snp_id>
        <super_contig>c011901131.Contig1</super_contig>
        <contig_pos>38594</contig_pos>
        <strand>+</strand>
        <context>AGATTTGCTC[A/C]TTTCCGTTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCCAATTTCGAATTTTCGATTTTCGTAAAATCATGAAAAAAGATTTGCTC</left_flank>
        <right_flank>TTTCCGTTGAATTTGAATTTCCCGCCTGTGGAAATCAGCGATTCCGGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTCACATCGTACATGTCCGCTAGTTTCAGAATTTCGTCGACGGTTTCGTCTGGAAATTTTGAAAAAAATTTTTTTTTTCAAAATTTTATTTTACCATTCAAAACCGATTCTCCATACAAAAATTCCAGAAAAATCTGAAATTCGTGCGGATCGATATCCTTCAACTCGATTATCGATTTTTCGGATTCGACGAATTTTCCCTAAAACAACGTTTTAAAATATGCGATTGTGATGCTAGTGTCAACTTCGACACATAGAATTTACGCTGAGCAATCGTCAGAACGACATCTGAAACCTCTTTTGCCACGTCATCATCGAAAATTCTCGATTTTTCTTTTCCAATTTTGATACCAATCGATTTTTCCGTATCGATTTCTACGAGAAATTCAATTTCAGCACTTCCATTTTTCAGATAATTCGAATTCTGCGACCAATATTCTAAAATTGCCAATTTCGAATTTTCGATTTTCGTAAAATCATGAAAAAAGATTTGCTCCTTTCCGTTGAATTTGAATTTCCCGCCTGTGGAAATCAGCGATTCCGGATTATCGATTTTTTCCAGACAATCCAGATAGGCCTTGAGTTTTTGGTCTTTTCGAAGCAAGCGGATTTTCCTGAAAAATTTTTTTTGGCCTAAAAAATTTGAATTACTTGAATATCGATTTTTCGAAAATATCGATTTTCGGCCCTACCACGACATCCCTAGATGATCCTCGACGTCTCCACACTTTTCTGTGTCTATTTCCATTTTTTCGACATTTTCGAATAATTTTTTGATTACGAAGCTTTTTTTGGGCATTTTTTAGCTGAAAAATGGCAGTTTTAGCAGGAAATTGCGAGAAAACCAGCGAAAATGAGCCGGAATGAAGGGAAATGAAGCGAAAATCACAATAGGCTTTAAAATGGGAAAATACTAGAGTTTTCGCTGGAAAATATGTAATTTACGACGAAAATTTGGAATTTATTTAATTTTTTGGTTAAAAATGCATGAAAAACG</canonical>
            <polymorphic>GTTTTCACATCGTACATGTCCGCTAGTTTCAGAATTTCGTCGACGGTTTCGTCTGGAAATTTTGAAAAAAATTTTTTTTTTCAAAATTTTATTTTACCATTCAAAACCGATTCTCCATACAAAAATTCCAGAAAAATCTGAAATTCGTGCGGATCGATATCCTTCAACTCGATTATCGATTTTTCGGATTCGACGAATTTTCCCTAAAACAACGTTTTAAAATATGCGATTGTGATGCTAGTGTCAACTTCGACACATAGAATTTACGCTGAGCAATCGTCAGAACGACATCTGAAACCTCTTTTGCCACGTCATCATCGAAAATTCTCGATTTTTCTTTTCCAATTTTGATACCAATCGATTTTTCCGTATCGATTTCTACGAGAAATTCAATTTCAGCACTTCCATTTTTCAGATAATTCGAATTCTGCGACCAATATTCTAAAATTGCCAATTTCGAATTTTCGATTTTCGTAAAATCATGAAAAAAGATTTGCTCMTTTCCGTTGAATTTGAATTTCCCGCCTGTGGAAATCAGCGATTCCGGATTATCGATTTTTTCCAGACAATCCAGATAGGCCTTGAGTTTTTGGTCTTTTCGAAGCAAGCGGATTTTCCTGAAAAATTTTTTTTGGCCTAAAAAATTTGAATTACTTGAATATCGATTTTTCGAAAATATCGATTTTCGGCCCTACCACGACATCCCTAGATGATCCTCGACGTCTCCACACTTTTCTGTGTCTATTTCCATTTTTTCGACATTTTCGAATAATTTTTTGATTACGAAGCTTTTTTTGGGCATTTTTTAGCTGAAAAATGGCAGTTTTAGCAGGAAATTGCGAGAAAACCAGCGAAAATGAGCCGGAATGAAGGGAAATGAAGCGAAAATCACAATAGGCTTTAAAATGGGAAAATACTAGAGTTTTCGCTGGAAAATATGTAATTTACGACGAAAATTTGGAATTTATTTAATTTTTTGGTTAAAAATGCATGAAAAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTTCCGTATCGATTTCTAC</pcr_primer_p1>
		<pcr_primer_p2>CTTCGAAAAGACCAAAAACTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GATTTTTCCGTATCGATTTCTACGAGAAATTCAATTTCAGCACTTCCATTTTTCAGATAATTCGAATTCTGCGACCAATATTCTAAAATTGCCAATTTCGAATTTTCGATTTTCGTAAAATCATGAAAAAAGATTTGCTCCTTTCCGTTGAATTTGAATTTCCCGCCTGTGGAAATCAGCGATTCCGGATTATCGATTTTTTCCAGACAATCCAGATAGGCCTTGAGTTTTTGGTCTTTTCGAAG</canonical_amplicon>
		<polymorphic_amplicon>GATTTTTCCGTATCGATTTCTACGAGAAATTCAATTTCAGCACTTCCATTTTTCAGATAATTCGAATTCTGCGACCAATATTCTAAAATTGCCAATTTCGAATTTTCGATTTTCGTAAAATCATGAAAAAAGATTTGCTCMTTTCCGTTGAATTTGAATTTCCCGCCTGTGGAAATCAGCGATTCCGGATTATCGATTTTTTCCAGACAATCCAGATAGGCCTTGAGTTTTTGGTCTTTTCGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37192</snp_id>
        <super_contig>c011901131.Contig1</super_contig>
        <contig_pos>38720</contig_pos>
        <strand>+</strand>
        <context>TCCTGAAAAA[A/T]TTTTTTTGGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGGCCTTGAGTTTTTGGTCTTTTCGAAGCAAGCGGATTTTCCTGAAAAA</left_flank>
        <right_flank>TTTTTTTGGCCTAAAAAATTTGAATTACTTGAATATCGATTTTTCGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAGAAAAATCTGAAATTCGTGCGGATCGATATCCTTCAACTCGATTATCGATTTTTCGGATTCGACGAATTTTCCCTAAAACAACGTTTTAAAATATGCGATTGTGATGCTAGTGTCAACTTCGACACATAGAATTTACGCTGAGCAATCGTCAGAACGACATCTGAAACCTCTTTTGCCACGTCATCATCGAAAATTCTCGATTTTTCTTTTCCAATTTTGATACCAATCGATTTTTCCGTATCGATTTCTACGAGAAATTCAATTTCAGCACTTCCATTTTTCAGATAATTCGAATTCTGCGACCAATATTCTAAAATTGCCAATTTCGAATTTTCGATTTTCGTAAAATCATGAAAAAAGATTTGCTCCTTTCCGTTGAATTTGAATTTCCCGCCTGTGGAAATCAGCGATTCCGGATTATCGATTTTTTCCAGACAATCCAGATAGGCCTTGAGTTTTTGGTCTTTTCGAAGCAAGCGGATTTTCCTGAAAAATTTTTTTTGGCCTAAAAAATTTGAATTACTTGAATATCGATTTTTCGAAAATATCGATTTTCGGCCCTACCACGACATCCCTAGATGATCCTCGACGTCTCCACACTTTTCTGTGTCTATTTCCATTTTTTCGACATTTTCGAATAATTTTTTGATTACGAAGCTTTTTTTGGGCATTTTTTAGCTGAAAAATGGCAGTTTTAGCAGGAAATTGCGAGAAAACCAGCGAAAATGAGCCGGAATGAAGGGAAATGAAGCGAAAATCACAATAGGCTTTAAAATGGGAAAATACTAGAGTTTTCGCTGGAAAATATGTAATTTACGACGAAAATTTGGAATTTATTTAATTTTTTGGTTAAAAATGCATGAAAAACGAAGAAAATCGGTTGAAAATGAGGGAAAATCGAGGGAAATCGGCTTTGTGGGTTACTGTAGAAATTTAAAGGCGCATGCTTAAAAATGCTTCAATTTTTCGAAATTCGTCGAAAATTGCTTGAAAAA</canonical>
            <polymorphic>TCCAGAAAAATCTGAAATTCGTGCGGATCGATATCCTTCAACTCGATTATCGATTTTTCGGATTCGACGAATTTTCCCTAAAACAACGTTTTAAAATATGCGATTGTGATGCTAGTGTCAACTTCGACACATAGAATTTACGCTGAGCAATCGTCAGAACGACATCTGAAACCTCTTTTGCCACGTCATCATCGAAAATTCTCGATTTTTCTTTTCCAATTTTGATACCAATCGATTTTTCCGTATCGATTTCTACGAGAAATTCAATTTCAGCACTTCCATTTTTCAGATAATTCGAATTCTGCGACCAATATTCTAAAATTGCCAATTTCGAATTTTCGATTTTCGTAAAATCATGAAAAAAGATTTGCTCCTTTCCGTTGAATTTGAATTTCCCGCCTGTGGAAATCAGCGATTCCGGATTATCGATTTTTTCCAGACAATCCAGATAGGCCTTGAGTTTTTGGTCTTTTCGAAGCAAGCGGATTTTCCTGAAAAAWTTTTTTTGGCCTAAAAAATTTGAATTACTTGAATATCGATTTTTCGAAAATATCGATTTTCGGCCCTACCACGACATCCCTAGATGATCCTCGACGTCTCCACACTTTTCTGTGTCTATTTCCATTTTTTCGACATTTTCGAATAATTTTTTGATTACGAAGCTTTTTTTGGGCATTTTTTAGCTGAAAAATGGCAGTTTTAGCAGGAAATTGCGAGAAAACCAGCGAAAATGAGCCGGAATGAAGGGAAATGAAGCGAAAATCACAATAGGCTTTAAAATGGGAAAATACTAGAGTTTTCGCTGGAAAATATGTAATTTACGACGAAAATTTGGAATTTATTTAATTTTTTGGTTAAAAATGCATGAAAAACGAAGAAAATCGGTTGAAAATGAGGGAAAATCGAGGGAAATCGGCTTTGTGGGTTACTGTAGAAATTTAAAGGCGCATGCTTAAAAATGCTTCAATTTTTCGAAATTCGTCGAAAATTGCTTGAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>312 108 100 65 64 62 54 50 40 37 36 25 19 15 7 6</canonical_bands>
                <polymorphic_bands>312 127 100 65 64 62 54 50 40 37 36 25 15 7 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>122 108 107 91 65 64 62 54 50 43 30 26 22 21 19 15 14 13 11 10 9 7 7 7 6 6 6 5</canonical_bands>
                <polymorphic_bands>127 122 107 91 65 64 62 54 50 43 30 26 22 21 15 14 13 11 10 9 7 7 7 6 6 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAGATAGGCCTTGAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAACTGCCATTTTTCAGCTA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CCAGATAGGCCTTGAGTTTTTGGTCTTTTCGAAGCAAGCGGATTTTCCTGAAAAATTTTTTTTGGCCTAAAAAATTTGAATTACTTGAATATCGATTTTTCGAAAATATCGATTTTCGGCCCTACCACGACATCCCTAGATGATCCTCGACGTCTCCACACTTTTCTGTGTCTATTTCCATTTTTTCGACATTTTCGAATAATTTTTTGATTACGAAGCTTTTTTTGGGCATTTTTTAGCTGAAAAATGGCAGTTT</canonical_amplicon>
		<polymorphic_amplicon>CCAGATAGGCCTTGAGTTTTTGGTCTTTTCGAAGCAAGCGGATTTTCCTGAAAAAWTTTTTTTGGCCTAAAAAATTTGAATTACTTGAATATCGATTTTTCGAAAATATCGATTTTCGGCCCTACCACGACATCCCTAGATGATCCTCGACGTCTCCACACTTTTCTGTGTCTATTTCCATTTTTTCGACATTTTCGAATAATTTTTTGATTACGAAGCTTTTTTTGGGCATTTTTTAGCTGAAAAATGGCAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37193</snp_id>
        <super_contig>c011901131.Contig1</super_contig>
        <contig_pos>38751</contig_pos>
        <strand>+</strand>
        <context>TGAATTACTT[A/G]AATATCGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCGGATTTTCCTGAAAAATTTTTTTTGGCCTAAAAAATTTGAATTACTT</left_flank>
        <right_flank>AATATCGATTTTTCGAAAATATCGATTTTCGGCCCTACCACGACATCCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCCTTCAACTCGATTATCGATTTTTCGGATTCGACGAATTTTCCCTAAAACAACGTTTTAAAATATGCGATTGTGATGCTAGTGTCAACTTCGACACATAGAATTTACGCTGAGCAATCGTCAGAACGACATCTGAAACCTCTTTTGCCACGTCATCATCGAAAATTCTCGATTTTTCTTTTCCAATTTTGATACCAATCGATTTTTCCGTATCGATTTCTACGAGAAATTCAATTTCAGCACTTCCATTTTTCAGATAATTCGAATTCTGCGACCAATATTCTAAAATTGCCAATTTCGAATTTTCGATTTTCGTAAAATCATGAAAAAAGATTTGCTCCTTTCCGTTGAATTTGAATTTCCCGCCTGTGGAAATCAGCGATTCCGGATTATCGATTTTTTCCAGACAATCCAGATAGGCCTTGAGTTTTTGGTCTTTTCGAAGCAAGCGGATTTTCCTGAAAAATTTTTTTTGGCCTAAAAAATTTGAATTACTTGAATATCGATTTTTCGAAAATATCGATTTTCGGCCCTACCACGACATCCCTAGATGATCCTCGACGTCTCCACACTTTTCTGTGTCTATTTCCATTTTTTCGACATTTTCGAATAATTTTTTGATTACGAAGCTTTTTTTGGGCATTTTTTAGCTGAAAAATGGCAGTTTTAGCAGGAAATTGCGAGAAAACCAGCGAAAATGAGCCGGAATGAAGGGAAATGAAGCGAAAATCACAATAGGCTTTAAAATGGGAAAATACTAGAGTTTTCGCTGGAAAATATGTAATTTACGACGAAAATTTGGAATTTATTTAATTTTTTGGTTAAAAATGCATGAAAAACGAAGAAAATCGGTTGAAAATGAGGGAAAATCGAGGGAAATCGGCTTTGTGGGTTACTGTAGAAATTTAAAGGCGCATGCTTAAAAATGCTTCAATTTTTCGAAATTCGTCGAAAATTGCTTGAAAAAAAGAGAATTTCTAGCTTTTACGGATTTTTCA</canonical>
            <polymorphic>TATCCTTCAACTCGATTATCGATTTTTCGGATTCGACGAATTTTCCCTAAAACAACGTTTTAAAATATGCGATTGTGATGCTAGTGTCAACTTCGACACATAGAATTTACGCTGAGCAATCGTCAGAACGACATCTGAAACCTCTTTTGCCACGTCATCATCGAAAATTCTCGATTTTTCTTTTCCAATTTTGATACCAATCGATTTTTCCGTATCGATTTCTACGAGAAATTCAATTTCAGCACTTCCATTTTTCAGATAATTCGAATTCTGCGACCAATATTCTAAAATTGCCAATTTCGAATTTTCGATTTTCGTAAAATCATGAAAAAAGATTTGCTCCTTTCCGTTGAATTTGAATTTCCCGCCTGTGGAAATCAGCGATTCCGGATTATCGATTTTTTCCAGACAATCCAGATAGGCCTTGAGTTTTTGGTCTTTTCGAAGCAAGCGGATTTTCCTGAAAAATTTTTTTTGGCCTAAAAAATTTGAATTACTTRAATATCGATTTTTCGAAAATATCGATTTTCGGCCCTACCACGACATCCCTAGATGATCCTCGACGTCTCCACACTTTTCTGTGTCTATTTCCATTTTTTCGACATTTTCGAATAATTTTTTGATTACGAAGCTTTTTTTGGGCATTTTTTAGCTGAAAAATGGCAGTTTTAGCAGGAAATTGCGAGAAAACCAGCGAAAATGAGCCGGAATGAAGGGAAATGAAGCGAAAATCACAATAGGCTTTAAAATGGGAAAATACTAGAGTTTTCGCTGGAAAATATGTAATTTACGACGAAAATTTGGAATTTATTTAATTTTTTGGTTAAAAATGCATGAAAAACGAAGAAAATCGGTTGAAAATGAGGGAAAATCGAGGGAAATCGGCTTTGTGGGTTACTGTAGAAATTTAAAGGCGCATGCTTAAAAATGCTTCAATTTTTCGAAATTCGTCGAAAATTGCTTGAAAAAAAGAGAATTTCTAGCTTTTACGGATTTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTGAGTTTTTGGTCTTTTC</pcr_primer_p1>
		<pcr_primer_p2>AAACTGCCATTTTTCAGCTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCTTGAGTTTTTGGTCTTTTCGAAGCAAGCGGATTTTCCTGAAAAATTTTTTTTGGCCTAAAAAATTTGAATTACTTGAATATCGATTTTTCGAAAATATCGATTTTCGGCCCTACCACGACATCCCTAGATGATCCTCGACGTCTCCACACTTTTCTGTGTCTATTTCCATTTTTTCGACATTTTCGAATAATTTTTTGATTACGAAGCTTTTTTTGGGCATTTTTTAGCTGAAAAATGGCAGTTT</canonical_amplicon>
		<polymorphic_amplicon>CCTTGAGTTTTTGGTCTTTTCGAAGCAAGCGGATTTTCCTGAAAAATTTTTTTTGGCCTAAAAAATTTGAATTACTTRAATATCGATTTTTCGAAAATATCGATTTTCGGCCCTACCACGACATCCCTAGATGATCCTCGACGTCTCCACACTTTTCTGTGTCTATTTCCATTTTTTCGACATTTTCGAATAATTTTTTGATTACGAAGCTTTTTTTGGGCATTTTTTAGCTGAAAAATGGCAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37194</snp_id>
        <super_contig>c011901131.Contig1</super_contig>
        <contig_pos>47135</contig_pos>
        <strand>+</strand>
        <context>TTTTTGGCCT[A/G]AAAAATTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGGTCTTTTCGAAGCAAGCGGATTTTCCTGAAAAAATTTTTTTGGCCT</left_flank>
        <right_flank>AAAAATTTGAATTTCTTAAATATCGATTTTTCGAAAATATCGATTTTCGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATCTTACTGTATTTTTCAAATTCTTGCACGCGCCTTTAATACAGTACCTCAACATTTATCGAATTTTCTTAAATTTCTCTCATTTTTTCGCTTGTTTCTGTCTAATTTTGCGTATCTCTTATAAATCTTTAATTTATTTTTCTTATAAAATAGAAAAAAACAGCCAAATAGGGCCCAAAATAAAAAACGTCCGAGGTACGGTATTTAAAGGTGCAGTCCAGTGTACCGTATCATTGCCTACAAAAGATCCAATTTGCACGCTTACATTCTTGAAATTATTCAAATTCTGCGACCAATATTCTAAAATTGCCAATTCCCAATTTTCGATTCTCGTGAAATCATGAAAGACGATGTGCTCCTTTCCGTTGAATTTGAATTTCCCGCCTGTGGAAATCACCGATTCCGGATTATCGATTTTTTCCAGACAATCCAGATAGACCTTGAGTTTTTGGTCTTTTCGAAGCAAGCGGATTTTCCTGAAAAAATTTTTTTGGCCTAAAAAATTTGAATTTCTTAAATATCGATTTTTCGAAAATATCGATTTTCGGCCCTACCACGACATCCCTAGATGATCCTCGACGTCNNNNNNNNNNCCACCTTTAAAGGCGTTTTTCGCTGTGCGACCAACGATGCGATTTTGAGTAAATTTTCGGCCGCAACGTGCATTGATTTCGGACGAGAGTAATAACGGGGCCAACGAATTTTAGATAAAATACCGATAAACGGGGGGGGGGGGGGGGAAATTTTGGGATTTTCAGCGAGGAAAATAAGCACGGAAAGTTGAATTTAGAATGAGCAAAAATTTCGAAATCAAAGTACAGTAGTCCTCTTACAGGAACATTCATAATTTTTAAAAATGGATTCGCATTTGTTTTTTCTTTTGCAAAGAAAAAACAAATCGACATTGAATTAACTTGAAAAATCCGTAAAAGCTAGAAATTCTCTTTTTTTCAAGCAATTTTCGACAAATTTCGAAAAATTGAAGCATTTTTAAGCAT</canonical>
            <polymorphic>GAATCTTACTGTATTTTTCAAATTCTTGCACGCGCCTTTAATACAGTACCTCAACATTTATCGAATTTTCTTAAATTTCTCTCATTTTTTCGCTTGTTTCTGTCTAATTTTGCGTATCTCTTATAAATCTTTAATTTATTTTTCTTATAAAATAGAAAAAAACAGCCAAATAGGGCCCAAAATAAAAAACGTCCGAGGTACGGTATTTAAAGGTGCAGTCCAGTGTACCGTATCATTGCCTACAAAAGATCCAATTTGCACGCTTACATTCTTGAAATTATTCAAATTCTGCGACCAATATTCTAAAATTGCCAATTCCCAATTTTCGATTCTCGTGAAATCATGAAAGACGATGTGCTCCTTTCCGTTGAATTTGAATTTCCCGCCTGTGGAAATCACCGATTCCGGATTATCGATTTTTTCCAGACAATCCAGATAGACCTTGAGTTTTTGGTCTTTTCGAAGCAAGCGGATTTTCCTGAAAAAATTTTTTTGGCCTRAAAAATTTGAATTTCTTAAATATCGATTTTTCGAAAATATCGATTTTCGGCCCTACCACGACATCCCTAGATGATCCTCGACGTCNNNNNNNNNNCCACCTTTAAAGGCGTTTTTCGCTGTGCGACCAACGATGCGATTTTGAGTAAATTTTCGGCCGCAACGTGCATTGATTTCGGACGAGAGTAATAACGGGGCCAACGAATTTTAGATAAAATACCGATAAACGGGGGGGGGGGGGGGGAAATTTTGGGATTTTCAGCGAGGAAAATAAGCACGGAAAGTTGAATTTAGAATGAGCAAAAATTTCGAAATCAAAGTACAGTAGTCCTCTTACAGGAACATTCATAATTTTTAAAAATGGATTCGCATTTGTTTTTTCTTTTGCAAAGAAAAAACAAATCGACATTGAATTAACTTGAAAAATCCGTAAAAGCTAGAAATTCTCTTTTTTTCAAGCAATTTTCGACAAATTTCGAAAAATTGAAGCATTTTTAAGCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCGTGAAATCATGAAAGAC</pcr_primer_p1>
		<pcr_primer_p2>CATCTAGGGATGTCGTGGTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TCTCGTGAAATCATGAAAGACGATGTGCTCCTTTCCGTTGAATTTGAATTTCCCGCCTGTGGAAATCACCGATTCCGGATTATCGATTTTTTCCAGACAATCCAGATAGACCTTGAGTTTTTGGTCTTTTCGAAGCAAGCGGATTTTCCTGAAAAAATTTTTTTGGCCTAAAAAATTTGAATTTCTTAAATATCGATTTTTCGAAAATATCGATTTTCGGCCCTACCACGACATCCCTAGATG</canonical_amplicon>
		<polymorphic_amplicon>TCTCGTGAAATCATGAAAGACGATGTGCTCCTTTCCGTTGAATTTGAATTTCCCGCCTGTGGAAATCACCGATTCCGGATTATCGATTTTTTCCAGACAATCCAGATAGACCTTGAGTTTTTGGTCTTTTCGAAGCAAGCGGATTTTCCTGAAAAAATTTTTTTGGCCTRAAAAATTTGAATTTCTTAAATATCGATTTTTCGAAAATATCGATTTTCGGCCCTACCACGACATCCCTAGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37195</snp_id>
        <super_contig>c011901131.Contig1</super_contig>
        <contig_pos>47149</contig_pos>
        <strand>+</strand>
        <context>AATTTGAATT[A/T]CTTAAATATC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGCAAGCGGATTTTCCTGAAAAAATTTTTTTGGCCTAAAAAATTTGAATT</left_flank>
        <right_flank>CTTAAATATCGATTTTTCGAAAATATCGATTTTCGGCCCTACCACGACAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCAAATTCTTGCACGCGCCTTTAATACAGTACCTCAACATTTATCGAATTTTCTTAAATTTCTCTCATTTTTTCGCTTGTTTCTGTCTAATTTTGCGTATCTCTTATAAATCTTTAATTTATTTTTCTTATAAAATAGAAAAAAACAGCCAAATAGGGCCCAAAATAAAAAACGTCCGAGGTACGGTATTTAAAGGTGCAGTCCAGTGTACCGTATCATTGCCTACAAAAGATCCAATTTGCACGCTTACATTCTTGAAATTATTCAAATTCTGCGACCAATATTCTAAAATTGCCAATTCCCAATTTTCGATTCTCGTGAAATCATGAAAGACGATGTGCTCCTTTCCGTTGAATTTGAATTTCCCGCCTGTGGAAATCACCGATTCCGGATTATCGATTTTTTCCAGACAATCCAGATAGACCTTGAGTTTTTGGTCTTTTCGAAGCAAGCGGATTTTCCTGAAAAAATTTTTTTGGCCTAAAAAATTTGAATTTCTTAAATATCGATTTTTCGAAAATATCGATTTTCGGCCCTACCACGACATCCCTAGATGATCCTCGACGTCNNNNNNNNNNCCACCTTTAAAGGCGTTTTTCGCTGTGCGACCAACGATGCGATTTTGAGTAAATTTTCGGCCGCAACGTGCATTGATTTCGGACGAGAGTAATAACGGGGCCAACGAATTTTAGATAAAATACCGATAAACGGGGGGGGGGGGGGGGAAATTTTGGGATTTTCAGCGAGGAAAATAAGCACGGAAAGTTGAATTTAGAATGAGCAAAAATTTCGAAATCAAAGTACAGTAGTCCTCTTACAGGAACATTCATAATTTTTAAAAATGGATTCGCATTTGTTTTTTCTTTTGCAAAGAAAAAACAAATCGACATTGAATTAACTTGAAAAATCCGTAAAAGCTAGAAATTCTCTTTTTTTCAAGCAATTTTCGACAAATTTCGAAAAATTGAAGCATTTTTAAGCATGCGCCTTTAAATTT</canonical>
            <polymorphic>TTTTCAAATTCTTGCACGCGCCTTTAATACAGTACCTCAACATTTATCGAATTTTCTTAAATTTCTCTCATTTTTTCGCTTGTTTCTGTCTAATTTTGCGTATCTCTTATAAATCTTTAATTTATTTTTCTTATAAAATAGAAAAAAACAGCCAAATAGGGCCCAAAATAAAAAACGTCCGAGGTACGGTATTTAAAGGTGCAGTCCAGTGTACCGTATCATTGCCTACAAAAGATCCAATTTGCACGCTTACATTCTTGAAATTATTCAAATTCTGCGACCAATATTCTAAAATTGCCAATTCCCAATTTTCGATTCTCGTGAAATCATGAAAGACGATGTGCTCCTTTCCGTTGAATTTGAATTTCCCGCCTGTGGAAATCACCGATTCCGGATTATCGATTTTTTCCAGACAATCCAGATAGACCTTGAGTTTTTGGTCTTTTCGAAGCAAGCGGATTTTCCTGAAAAAATTTTTTTGGCCTAAAAAATTTGAATTWCTTAAATATCGATTTTTCGAAAATATCGATTTTCGGCCCTACCACGACATCCCTAGATGATCCTCGACGTCNNNNNNNNNNCCACCTTTAAAGGCGTTTTTCGCTGTGCGACCAACGATGCGATTTTGAGTAAATTTTCGGCCGCAACGTGCATTGATTTCGGACGAGAGTAATAACGGGGCCAACGAATTTTAGATAAAATACCGATAAACGGGGGGGGGGGGGGGGAAATTTTGGGATTTTCAGCGAGGAAAATAAGCACGGAAAGTTGAATTTAGAATGAGCAAAAATTTCGAAATCAAAGTACAGTAGTCCTCTTACAGGAACATTCATAATTTTTAAAAATGGATTCGCATTTGTTTTTTCTTTTGCAAAGAAAAAACAAATCGACATTGAATTAACTTGAAAAATCCGTAAAAGCTAGAAATTCTCTTTTTTTCAAGCAATTTTCGACAAATTTCGAAAAATTGAAGCATTTTTAAGCATGCGCCTTTAAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>211 137 137 109 86 55 43 42 42 40 30 18 17 10 6 6 6 5</canonical_bands>
                <polymorphic_bands>211 143 137 109 86 55 43 42 42 40 30 18 17 10 6 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCGTGAAATCATGAAAGAC</pcr_primer_p1>
		<pcr_primer_p2>CATCTAGGGATGTCGTGGTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TCTCGTGAAATCATGAAAGACGATGTGCTCCTTTCCGTTGAATTTGAATTTCCCGCCTGTGGAAATCACCGATTCCGGATTATCGATTTTTTCCAGACAATCCAGATAGACCTTGAGTTTTTGGTCTTTTCGAAGCAAGCGGATTTTCCTGAAAAAATTTTTTTGGCCTAAAAAATTTGAATTTCTTAAATATCGATTTTTCGAAAATATCGATTTTCGGCCCTACCACGACATCCCTAGATG</canonical_amplicon>
		<polymorphic_amplicon>TCTCGTGAAATCATGAAAGACGATGTGCTCCTTTCCGTTGAATTTGAATTTCCCGCCTGTGGAAATCACCGATTCCGGATTATCGATTTTTTCCAGACAATCCAGATAGACCTTGAGTTTTTGGTCTTTTCGAAGCAAGCGGATTTTCCTGAAAAAATTTTTTTGGCCTAAAAAATTTGAATTWCTTAAATATCGATTTTTCGAAAATATCGATTTTCGGCCCTACCACGACATCCCTAGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37196</snp_id>
        <super_contig>c011901131.Contig1</super_contig>
        <contig_pos>47160</contig_pos>
        <strand>+</strand>
        <context>CTTAAATATC[A/G]ATTTTTCGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCCTGAAAAAATTTTTTTGGCCTAAAAAATTTGAATTTCTTAAATATC</left_flank>
        <right_flank>ATTTTTCGAAAATATCGATTTTCGGCCCTACCACGACATCCCTAGATGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCACGCGCCTTTAATACAGTACCTCAACATTTATCGAATTTTCTTAAATTTCTCTCATTTTTTCGCTTGTTTCTGTCTAATTTTGCGTATCTCTTATAAATCTTTAATTTATTTTTCTTATAAAATAGAAAAAAACAGCCAAATAGGGCCCAAAATAAAAAACGTCCGAGGTACGGTATTTAAAGGTGCAGTCCAGTGTACCGTATCATTGCCTACAAAAGATCCAATTTGCACGCTTACATTCTTGAAATTATTCAAATTCTGCGACCAATATTCTAAAATTGCCAATTCCCAATTTTCGATTCTCGTGAAATCATGAAAGACGATGTGCTCCTTTCCGTTGAATTTGAATTTCCCGCCTGTGGAAATCACCGATTCCGGATTATCGATTTTTTCCAGACAATCCAGATAGACCTTGAGTTTTTGGTCTTTTCGAAGCAAGCGGATTTTCCTGAAAAAATTTTTTTGGCCTAAAAAATTTGAATTTCTTAAATATCGATTTTTCGAAAATATCGATTTTCGGCCCTACCACGACATCCCTAGATGATCCTCGACGTCNNNNNNNNNNCCACCTTTAAAGGCGTTTTTCGCTGTGCGACCAACGATGCGATTTTGAGTAAATTTTCGGCCGCAACGTGCATTGATTTCGGACGAGAGTAATAACGGGGCCAACGAATTTTAGATAAAATACCGATAAACGGGGGGGGGGGGGGGGAAATTTTGGGATTTTCAGCGAGGAAAATAAGCACGGAAAGTTGAATTTAGAATGAGCAAAAATTTCGAAATCAAAGTACAGTAGTCCTCTTACAGGAACATTCATAATTTTTAAAAATGGATTCGCATTTGTTTTTTCTTTTGCAAAGAAAAAACAAATCGACATTGAATTAACTTGAAAAATCCGTAAAAGCTAGAAATTCTCTTTTTTTCAAGCAATTTTCGACAAATTTCGAAAAATTGAAGCATTTTTAAGCATGCGCCTTTAAATTTCTACAGTAACC</canonical>
            <polymorphic>TTGCACGCGCCTTTAATACAGTACCTCAACATTTATCGAATTTTCTTAAATTTCTCTCATTTTTTCGCTTGTTTCTGTCTAATTTTGCGTATCTCTTATAAATCTTTAATTTATTTTTCTTATAAAATAGAAAAAAACAGCCAAATAGGGCCCAAAATAAAAAACGTCCGAGGTACGGTATTTAAAGGTGCAGTCCAGTGTACCGTATCATTGCCTACAAAAGATCCAATTTGCACGCTTACATTCTTGAAATTATTCAAATTCTGCGACCAATATTCTAAAATTGCCAATTCCCAATTTTCGATTCTCGTGAAATCATGAAAGACGATGTGCTCCTTTCCGTTGAATTTGAATTTCCCGCCTGTGGAAATCACCGATTCCGGATTATCGATTTTTTCCAGACAATCCAGATAGACCTTGAGTTTTTGGTCTTTTCGAAGCAAGCGGATTTTCCTGAAAAAATTTTTTTGGCCTAAAAAATTTGAATTTCTTAAATATCRATTTTTCGAAAATATCGATTTTCGGCCCTACCACGACATCCCTAGATGATCCTCGACGTCNNNNNNNNNNCCACCTTTAAAGGCGTTTTTCGCTGTGCGACCAACGATGCGATTTTGAGTAAATTTTCGGCCGCAACGTGCATTGATTTCGGACGAGAGTAATAACGGGGCCAACGAATTTTAGATAAAATACCGATAAACGGGGGGGGGGGGGGGGAAATTTTGGGATTTTCAGCGAGGAAAATAAGCACGGAAAGTTGAATTTAGAATGAGCAAAAATTTCGAAATCAAAGTACAGTAGTCCTCTTACAGGAACATTCATAATTTTTAAAAATGGATTCGCATTTGTTTTTTCTTTTGCAAAGAAAAAACAAATCGACATTGAATTAACTTGAAAAATCCGTAAAAGCTAGAAATTCTCTTTTTTTCAAGCAATTTTCGACAAATTTCGAAAAATTGAAGCATTTTTAAGCATGCGCCTTTAAATTTCTACAGTAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>485 388 110 17</canonical_bands>
                <polymorphic_bands>485 388 127</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>265 229 94 87 63 63 50 47 38 37 10 9 8</canonical_bands>
                <polymorphic_bands>265 229 94 87 71 63 50 47 38 37 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTGAGTTTTTGGTCTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CCCGTTTATCGGTATTTTATC</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>CCTTGAGTTTTTGGTCTTTTCGAAGCAAGCGGATTTTCCTGAAAAAATTTTTTTGGCCTAAAAAATTTGAATTTCTTAAATATCGATTTTTCGAAAATATCGATTTTCGGCCCTACCACGACATCCCTAGATGATCCTCGACGTCNNNNNNNNNNCCACCTTTAAAGGCGTTTTTCGCTGTGCGACCAACGATGCGATTTTGAGTAAATTTTCGGCCGCAACGTGCATTGATTTCGGACGAGAGTAATAACGGGGCCAACGAATTTTAGATAAAATACCGATAAACGGG</canonical_amplicon>
		<polymorphic_amplicon>CCTTGAGTTTTTGGTCTTTTCGAAGCAAGCGGATTTTCCTGAAAAAATTTTTTTGGCCTAAAAAATTTGAATTTCTTAAATATCRATTTTTCGAAAATATCGATTTTCGGCCCTACCACGACATCCCTAGATGATCCTCGACGTCNNNNNNNNNNCCACCTTTAAAGGCGTTTTTCGCTGTGCGACCAACGATGCGATTTTGAGTAAATTTTCGGCCGCAACGTGCATTGATTTCGGACGAGAGTAATAACGGGGCCAACGAATTTTAGATAAAATACCGATAAACGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37197</snp_id>
        <super_contig>c011901131.Contig1</super_contig>
        <contig_pos>48451</contig_pos>
        <strand>-</strand>
        <context>GTAAATTCTA[A/G]GTGTCGAAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCAAAAGAGGTTTCAGATGTCGTTCTGACGATTGCTCAGCGTAAATTCTA</left_flank>
        <right_flank>GTGTCGAAGTTGACACTAGCATCACAATCGACATATTTTAAAACGTTGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAAATGGAAATAGACACCGAAATGTGTGGAGACGTCGAGGATCATCTAGGGATGTCGTGGTAGGGCCGAAAATCGATATTTTCGAAAAATCGATATTTAAGAATTCAAATTTTTTAGGCCAAAAAAATTTTTTCAGGAAAATCCGCTTGCTTCGAAAAGACCAAAAACTCAAGGTCTATCTGGATTGTCTGGAAAAAATCGATAATCCGGAATCGCTGATTTCCACAGGCGGGAAATTCAAATTCAACGGAAAGGAGCAAATCTTTTTTCATGATTTTACGAAAATCGAAAATTCGAAATTGGCAATTTTAGAATATTGGTCGCAGAATTCGAATTATCTGAAAAATGGAAGTGCTGAAATTGAATTTCTCGTAGAAATCGATACGGAAAAATCGATTGGTATCAAAATTGGAAAAGAAAAATCGAGAATTTTCGATGATGACGTGGCAAAAGAGGTTTCAGATGTCGTTCTGACGATTGCTCAGCGTAAATTCTATGTGTCGAAGTTGACACTAGCATCACAATCGACATATTTTAAAACGTTGTTTTTGGGAAAATTCGTCGAATCCGAAAAATCGATAATCGAGTTGAAGGATATCGATCCGCACGAATTTCAGATTTTTCTGGAATTTTTGTATGGAGAATCGGTTTTGAATGGTAAAATAAAATTTTGAAAAAAAAAAAAATTTTTTTTCAAAATTTCCAGACGAAACCGTCGACGAAATTCTGAAACTAGCGGACATGTACGATGTGAAAACCGCAAATCGCCAATGCGAAAAATTTCTCCTCGCCGATTCCAAAAAATCGATAAAAGACAAGCTCACAGCTGCCGCAATGTATAATTTGGAGAATTTAAAGGTGATGAAATGATGCAATATCACTCTAATGCTAATTTTCTCCAATTTTTTTAGGCTGTCTGTCTGTCTGAAATCAAAACAGTGTCCGATCTCCGCTCGATTGTTCCAGAAGAATCCAGCCAATTCGATACGGATGTCTG</canonical>
            <polymorphic>GAAAAAATGGAAATAGACACCGAAATGTGTGGAGACGTCGAGGATCATCTAGGGATGTCGTGGTAGGGCCGAAAATCGATATTTTCGAAAAATCGATATTTAAGAATTCAAATTTTTTAGGCCAAAAAAATTTTTTCAGGAAAATCCGCTTGCTTCGAAAAGACCAAAAACTCAAGGTCTATCTGGATTGTCTGGAAAAAATCGATAATCCGGAATCGCTGATTTCCACAGGCGGGAAATTCAAATTCAACGGAAAGGAGCAAATCTTTTTTCATGATTTTACGAAAATCGAAAATTCGAAATTGGCAATTTTAGAATATTGGTCGCAGAATTCGAATTATCTGAAAAATGGAAGTGCTGAAATTGAATTTCTCGTAGAAATCGATACGGAAAAATCGATTGGTATCAAAATTGGAAAAGAAAAATCGAGAATTTTCGATGATGACGTGGCAAAAGAGGTTTCAGATGTCGTTCTGACGATTGCTCAGCGTAAATTCTARGTGTCGAAGTTGACACTAGCATCACAATCGACATATTTTAAAACGTTGTTTTTGGGAAAATTCGTCGAATCCGAAAAATCGATAATCGAGTTGAAGGATATCGATCCGCACGAATTTCAGATTTTTCTGGAATTTTTGTATGGAGAATCGGTTTTGAATGGTAAAATAAAATTTTGAAAAAAAAAAAAATTTTTTTTCAAAATTTCCAGACGAAACCGTCGACGAAATTCTGAAACTAGCGGACATGTACGATGTGAAAACCGCAAATCGCCAATGCGAAAAATTTCTCCTCGCCGATTCCAAAAAATCGATAAAAGACAAGCTCACAGCTGCCGCAATGTATAATTTGGAGAATTTAAAGGTGATGAAATGATGCAATATCACTCTAATGCTAATTTTCTCCAATTTTTTTAGGCTGTCTGTCTGTCTGAAATCAAAACAGTGTCCGATCTCCGCTCGATTGTTCCAGAAGAATCCAGCCAATTCGATACGGATGTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATCAAAATTGGAAAAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACCGATTCTCCATACAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTATCAAAATTGGAAAAGAAAAATCGAGAATTTTCGATGATGACGTGGCAAAAGAGGTTTCAGATGTCGTTCTGACGATTGCTCAGCGTAAATTCTATGTGTCGAAGTTGACACTAGCATCACAATCGACATATTTTAAAACGTTGTTTTTGGGAAAATTCGTCGAATCCGAAAAATCGATAATCGAGTTGAAGGATATCGATCCGCACGAATTTCAGATTTTTCTGGAATTTTTGTATGGAGAATCGGT</canonical_amplicon>
		<polymorphic_amplicon>GTATCAAAATTGGAAAAGAAAAATCGAGAATTTTCGATGATGACGTGGCAAAAGAGGTTTCAGATGTCGTTCTGACGATTGCTCAGCGTAAATTCTARGTGTCGAAGTTGACACTAGCATCACAATCGACATATTTTAAAACGTTGTTTTTGGGAAAATTCGTCGAATCCGAAAAATCGATAATCGAGTTGAAGGATATCGATCCGCACGAATTTCAGATTTTTCTGGAATTTTTGTATGGAGAATCGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37198</snp_id>
        <super_contig>c011901131.Contig1</super_contig>
        <contig_pos>48504</contig_pos>
        <strand>-</strand>
        <context>ACGTTGTTTT[A/T]GGGAAAATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCGAAGTTGACACTAGCATCACAATCGACATATTTTAAAACGTTGTTTT</left_flank>
        <right_flank>GGGAAAATTCGTCGAATCCGAAAAATCGATAATCGAGTTGAAGGATATCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGTCGTGGTAGGGCCGAAAATCGATATTTTCGAAAAATCGATATTTAAGAATTCAAATTTTTTAGGCCAAAAAAATTTTTTCAGGAAAATCCGCTTGCTTCGAAAAGACCAAAAACTCAAGGTCTATCTGGATTGTCTGGAAAAAATCGATAATCCGGAATCGCTGATTTCCACAGGCGGGAAATTCAAATTCAACGGAAAGGAGCAAATCTTTTTTCATGATTTTACGAAAATCGAAAATTCGAAATTGGCAATTTTAGAATATTGGTCGCAGAATTCGAATTATCTGAAAAATGGAAGTGCTGAAATTGAATTTCTCGTAGAAATCGATACGGAAAAATCGATTGGTATCAAAATTGGAAAAGAAAAATCGAGAATTTTCGATGATGACGTGGCAAAAGAGGTTTCAGATGTCGTTCTGACGATTGCTCAGCGTAAATTCTATGTGTCGAAGTTGACACTAGCATCACAATCGACATATTTTAAAACGTTGTTTTTGGGAAAATTCGTCGAATCCGAAAAATCGATAATCGAGTTGAAGGATATCGATCCGCACGAATTTCAGATTTTTCTGGAATTTTTGTATGGAGAATCGGTTTTGAATGGTAAAATAAAATTTTGAAAAAAAAAAAAATTTTTTTTCAAAATTTCCAGACGAAACCGTCGACGAAATTCTGAAACTAGCGGACATGTACGATGTGAAAACCGCAAATCGCCAATGCGAAAAATTTCTCCTCGCCGATTCCAAAAAATCGATAAAAGACAAGCTCACAGCTGCCGCAATGTATAATTTGGAGAATTTAAAGGTGATGAAATGATGCAATATCACTCTAATGCTAATTTTCTCCAATTTTTTTAGGCTGTCTGTCTGTCTGAAATCAAAACAGTGTCCGATCTCCGCTCGATTGTTCCAGAAGAATCCAGCCAATTCGATACGGATGTCTGGATGAATCTCTTCCTTAAATTGTTGTCTTTTTCCAAATAATTTGTAATTTTGC</canonical>
            <polymorphic>GATGTCGTGGTAGGGCCGAAAATCGATATTTTCGAAAAATCGATATTTAAGAATTCAAATTTTTTAGGCCAAAAAAATTTTTTCAGGAAAATCCGCTTGCTTCGAAAAGACCAAAAACTCAAGGTCTATCTGGATTGTCTGGAAAAAATCGATAATCCGGAATCGCTGATTTCCACAGGCGGGAAATTCAAATTCAACGGAAAGGAGCAAATCTTTTTTCATGATTTTACGAAAATCGAAAATTCGAAATTGGCAATTTTAGAATATTGGTCGCAGAATTCGAATTATCTGAAAAATGGAAGTGCTGAAATTGAATTTCTCGTAGAAATCGATACGGAAAAATCGATTGGTATCAAAATTGGAAAAGAAAAATCGAGAATTTTCGATGATGACGTGGCAAAAGAGGTTTCAGATGTCGTTCTGACGATTGCTCAGCGTAAATTCTATGTGTCGAAGTTGACACTAGCATCACAATCGACATATTTTAAAACGTTGTTTTWGGGAAAATTCGTCGAATCCGAAAAATCGATAATCGAGTTGAAGGATATCGATCCGCACGAATTTCAGATTTTTCTGGAATTTTTGTATGGAGAATCGGTTTTGAATGGTAAAATAAAATTTTGAAAAAAAAAAAAATTTTTTTTCAAAATTTCCAGACGAAACCGTCGACGAAATTCTGAAACTAGCGGACATGTACGATGTGAAAACCGCAAATCGCCAATGCGAAAAATTTCTCCTCGCCGATTCCAAAAAATCGATAAAAGACAAGCTCACAGCTGCCGCAATGTATAATTTGGAGAATTTAAAGGTGATGAAATGATGCAATATCACTCTAATGCTAATTTTCTCCAATTTTTTTAGGCTGTCTGTCTGTCTGAAATCAAAACAGTGTCCGATCTCCGCTCGATTGTTCCAGAAGAATCCAGCCAATTCGATACGGATGTCTGGATGAATCTCTTCCTTAAATTGTTGTCTTTTTCCAAATAATTTGTAATTTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATCAAAATTGGAAAAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACCGATTCTCCATACAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTATCAAAATTGGAAAAGAAAAATCGAGAATTTTCGATGATGACGTGGCAAAAGAGGTTTCAGATGTCGTTCTGACGATTGCTCAGCGTAAATTCTATGTGTCGAAGTTGACACTAGCATCACAATCGACATATTTTAAAACGTTGTTTTTGGGAAAATTCGTCGAATCCGAAAAATCGATAATCGAGTTGAAGGATATCGATCCGCACGAATTTCAGATTTTTCTGGAATTTTTGTATGGAGAATCGGT</canonical_amplicon>
		<polymorphic_amplicon>GTATCAAAATTGGAAAAGAAAAATCGAGAATTTTCGATGATGACGTGGCAAAAGAGGTTTCAGATGTCGTTCTGACGATTGCTCAGCGTAAATTCTATGTGTCGAAGTTGACACTAGCATCACAATCGACATATTTTAAAACGTTGTTTTWGGGAAAATTCGTCGAATCCGAAAAATCGATAATCGAGTTGAAGGATATCGATCCGCACGAATTTCAGATTTTTCTGGAATTTTTGTATGGAGAATCGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37199</snp_id>
        <super_contig>c012001267.Contig1</super_contig>
        <contig_pos>51891</contig_pos>
        <strand></strand>
        <context>TCAAACTTTA[T/G]ATAGAAAGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GAAATCGGTTTGTTAGGTCACCAGGTTGGTCCTGGAGCAATCAAACTTTA</left_flank>
        <right_flank>ATAGAAAGTCTTGATCGGCTCCGTTTTGGAGCTCATTTAGGAGGTGGTGA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTCTAACAGAGCGCTCATTTCAAATCATCAACTTTGGGAACGTATATCTCGTTCCCTGTGGAAGATATCAAAAATGATTGGTTTGATATTCTGATAAAAAATTATCAGTTGATGGACAGGATGGAAGGACAGCGATGCGATTTCCTTTTCGGGTATTGATCGGAAATTCGACCACAAAATGGGATCCAGTAGTTCTGGTACATGTATAGAGACTTTGAAATTTGAACAACTTGAATTGAACAGCTTGAGGGGTTCAAAAACGATTATGAGAAGAGCAAATAATTTATTGTAAGTATTTTTGTTTCATGCACACGGAGAATGCTTCTAAAAACTTCAAAATGTGTTTTCAAGCAACTCTAATTTTTTTAAACTTCAATTTTTTGAATGCTCCATTTTGAATGAGCTATAACTCGAAATCGGTTCCTTCACCATACTATTTCAGAACCTGAAATCGGTTTGTTAGGTCACCAGGTTGGTCCTGGAGCAATCAAACTTTATATAGAAAGTCTTGATCGGCTCCGTTTTGGAGCTCATTTAGGAGGTGGTGAATTTAATGCTTATAAAATTAGGAGTATCTTAAAATTCCGATTTTCGAAATTTCCGAATATCCAAAAATTCCGACTATGAAGTTTTGATAACTAAAAATTCGGATTATTCAGAGATCCGAACTTCCGAAAAGATTTATTTCGCACTTCTCTGGGTACTGTATAGGTTGGAAAAAATGAAATCCGGTTGATTCCAGAACACCCAATTTTTGCGAATTTTCGACAACATCTGAATGTTTATTGGACAAGTTGTCCATACTTTGATCATTTTGTCTGAGTAAAAAATTAACTGAATGGTTTGAGGTTGAAAAATATCTGTTTTTTGTGTTTTTTGTCTCCGTCGTAATCTTTTCCGATTGAATTGTTTTCCTATTCCAGAACTCCATCCCTCACTTCAGAGCTTCTATCCAGTTTCTAAAATACTCTCTCCTGAAAGTCCCTTCCCTCGAAAAT</canonical>
            <polymorphic>CACTCTAACAGAGCGCTCATTTCAAATCATCAACTTTGGGAACGTATATCTCGTTCCCTGTGGAAGATATCAAAAATGATTGGTTTGATATTCTGATAAAAAATTATCAGTTGATGGACAGGATGGAAGGACAGCGATGCGATTTCCTTTTCGGGTATTGATCGGAAATTCGACCACAAAATGGGATCCAGTAGTTCTGGTACATGTATAGAGACTTTGAAATTTGAACAACTTGAATTGAACAGCTTGAGGGGTTCAAAAACGATTATGAGAAGAGCAAATAATTTATTGTAAGTATTTTTGTTTCATGCACACGGAGAATGCTTCTAAAAACTTCAAAATGTGTTTTCAAGCAACTCTAATTTTTTTAAACTTCAATTTTTTGAATGCTCCATTTTGAATGAGCTATAACTCGAAATCGGTTCCTTCACCATACTATTTCAGAACCTGAAATCGGTTTGTTAGGTCACCAGGTTGGTCCTGGAGCAATCAAACTTTAKATAGAAAGTCTTGATCGGCTCCGTTTTGGAGCTCATTTAGGAGGTGGTGAATTTAATGCTTATAAAATTAGGAGTATCTTAAAATTCCGATTTTCGAAATTTCCGAATATCCAAAAATTCCGACTATGAAGTTTTGATAACTAAAAATTCGGATTATTCAGAGATCCGAACTTCCGAAAAGATTTATTTCGCACTTCTCTGGGTACTGTATAGGTTGGAAAAAATGAAATCCGGTTGATTCCAGAACACCCAATTTTTGCGAATTTTCGACAACATCTGAATGTTTATTGGACAAGTTGTCCATACTTTGATCATTTTGTCTGAGTAAAAAATTAACTGAATGGTTTGAGGTTGAAAAATATCTGTTTTTTGTGTTTTTTGTCTCCGTCGTAATCTTTTCCGATTGAATTGTTTTCCTATTCCAGAACTCCATCCCTCACTTCAGAGCTTCTATCCAGTTTCTAAAATACTCTCTCCTGAAAGTCCCTTCCCTCGAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAATGCTTCTAAAAACTTCAA</pcr_primer_p1>
		<pcr_primer_p2>ATTAAATTCACCACCTCCTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GAGAATGCTTCTAAAAACTTCAAAATGTGTTTTCAAGCAACTCTAATTTTTTTAAACTTCAATTTTTTGAATGCTCCATTTTGAATGAGCTATAACTCGAAATCGGTTCCTTCACCATACTATTTCAGAACCTGAAATCGGTTTGTTAGGTCACCAGGTTGGTCCTGGAGCAATCAAACTTTATATAGAAAGTCTTGATCGGCTCCGTTTTGGAGCTCATTTAGGAGGTGGTGAATTTAAT</canonical_amplicon>
		<polymorphic_amplicon>GAGAATGCTTCTAAAAACTTCAAAATGTGTTTTCAAGCAACTCTAATTTTTTTAAACTTCAATTTTTTGAATGCTCCATTTTGAATGAGCTATAACTCGAAATCGGTTCCTTCACCATACTATTTCAGAACCTGAAATCGGTTTGTTAGGTCACCAGGTTGGTCCTGGAGCAATCAAACTTTAKATAGAAAGTCTTGATCGGCTCCGTTTTGGAGCTCATTTAGGAGGTGGTGAATTTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37200</snp_id>
        <super_contig>c012001267.Contig1</super_contig>
        <contig_pos>52054</contig_pos>
        <strand></strand>
        <context>attattcaga[G/A]atccgaamtt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAAATTCCGACTATGAAGTTTTGATAACTAAAAATTCGGATTATTCAGA</left_flank>
        <right_flank>ATCCGAACTTCCGAAAAGATTTATTTCGCACTTCTCTGGGTACTGTATAG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAAATTCGACCACAAAATGGGATCCAGTAGTTCTGGTACATGTATAGAGACTTTGAAATTTGAACAACTTGAATTGAACAGCTTGAGGGGTTCAAAAACGATTATGAGAAGAGCAAATAATTTATTGTAAGTATTTTTGTTTCATGCACACGGAGAATGCTTCTAAAAACTTCAAAATGTGTTTTCAAGCAACTCTAATTTTTTTAAACTTCAATTTTTTGAATGCTCCATTTTGAATGAGCTATAACTCGAAATCGGTTCCTTCACCATACTATTTCAGAACCTGAAATCGGTTTGTTAGGTCACCAGGTTGGTCCTGGAGCAATCAAACTTTATATAGAAAGTCTTGATCGGCTCCGTTTTGGAGCTCATTTAGGAGGTGGTGAATTTAATGCTTATAAAATTAGGAGTATCTTAAAATTCCGATTTTCGAAATTTCCGAATATCCAAAAATTCCGACTATGAAGTTTTGATAACTAAAAATTCGGATTATTCAGAGATCCGAACTTCCGAAAAGATTTATTTCGCACTTCTCTGGGTACTGTATAGGTTGGAAAAAATGAAATCCGGTTGATTCCAGAACACCCAATTTTTGCGAATTTTCGACAACATCTGAATGTTTATTGGACAAGTTGTCCATACTTTGATCATTTTGTCTGAGTAAAAAATTAACTGAATGGTTTGAGGTTGAAAAATATCTGTTTTTTGTGTTTTTTGTCTCCGTCGTAATCTTTTCCGATTGAATTGTTTTCCTATTCCAGAACTCCATCCCTCACTTCAGAGCTTCTATCCAGTTTCTAAAATACTCTCTCCTGAAAGTCCCTTCCCTCGAAAATCGAGAATATTTTTCTCTTTTCGTAGTCTACCTTGCTCACCCATCATGTTTTTGGCGCCGATCTATACGATTTTCTCGGAAGCGTCATGGAAACCCGAAAGCTTTTAAGAATGAAACACGAATTCGGGGGACTTACAGGATTTTTCGAAAAGTGCTCCGATAGA</canonical>
            <polymorphic>GGAAATTCGACCACAAAATGGGATCCAGTAGTTCTGGTACATGTATAGAGACTTTGAAATTTGAACAACTTGAATTGAACAGCTTGAGGGGTTCAAAAACGATTATGAGAAGAGCAAATAATTTATTGTAAGTATTTTTGTTTCATGCACACGGAGAATGCTTCTAAAAACTTCAAAATGTGTTTTCAAGCAACTCTAATTTTTTTAAACTTCAATTTTTTGAATGCTCCATTTTGAATGAGCTATAACTCGAAATCGGTTCCTTCACCATACTATTTCAGAACCTGAAATCGGTTTGTTAGGTCACCAGGTTGGTCCTGGAGCAATCAAACTTTATATAGAAAGTCTTGATCGGCTCCGTTTTGGAGCTCATTTAGGAGGTGGTGAATTTAATGCTTATAAAATTAGGAGTATCTTAAAATTCCGATTTTCGAAATTTCCGAATATCCAAAAATTCCGACTATGAAGTTTTGATAACTAAAAATTCGGATTATTCAGARATCCGAACTTCCGAAAAGATTTATTTCGCACTTCTCTGGGTACTGTATAGGTTGGAAAAAATGAAATCCGGTTGATTCCAGAACACCCAATTTTTGCGAATTTTCGACAACATCTGAATGTTTATTGGACAAGTTGTCCATACTTTGATCATTTTGTCTGAGTAAAAAATTAACTGAATGGTTTGAGGTTGAAAAATATCTGTTTTTTGTGTTTTTTGTCTCCGTCGTAATCTTTTCCGATTGAATTGTTTTCCTATTCCAGAACTCCATCCCTCACTTCAGAGCTTCTATCCAGTTTCTAAAATACTCTCTCCTGAAAGTCCCTTCCCTCGAAAATCGAGAATATTTTTCTCTTTTCGTAGTCTACCTTGCTCACCCATCATGTTTTTGGCGCCGATCTATACGATTTTCTCGGAAGCGTCATGGAAACCCGAAAGCTTTTAAGAATGAAACACGAATTCGGGGGACTTACAGGATTTTTCGAAAAGTGCTCCGATAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>328 249 150 147 105 21</canonical_bands>
                <polymorphic_bands>328 297 249 105 21</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>501 478 21</canonical_bands>
                <polymorphic_bands>979 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGGAGGTGGTGAATTTAATG</pcr_primer_p1>
		<pcr_primer_p2>CCAATAAACATTCAGATGTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TTAGGAGGTGGTGAATTTAATGCTTATAAAATTAGGAGTATCTTAAAATTCCGATTTTCGAAATTTCCGAATATCCAAAAATTCCGACTATGAAGTTTTGATAACTAAAAATTCGGATTATTCAGAGATCCGAACTTCCGAAAAGATTTATTTCGCACTTCTCTGGGTACTGTATAGGTTGGAAAAAATGAAATCCGGTTGATTCCAGAACACCCAATTTTTGCGAATTTTCGACAACATCTGAATGTTTATTGG</canonical_amplicon>
		<polymorphic_amplicon>TTAGGAGGTGGTGAATTTAATGCTTATAAAATTAGGAGTATCTTAAAATTCCGATTTTCGAAATTTCCGAATATCCAAAAATTCCGACTATGAAGTTTTGATAACTAAAAATTCGGATTATTCAGARATCCGAACTTCCGAAAAGATTTATTTCGCACTTCTCTGGGTACTGTATAGGTTGGAAAAAATGAAATCCGGTTGATTCCAGAACACCCAATTTTTGCGAATTTTCGACAACATCTGAATGTTTATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37201</snp_id>
        <super_contig>c012001267.Contig1</super_contig>
        <contig_pos>52062</contig_pos>
        <strand></strand>
        <context>garatccgaa[C/A]ttccgaaaag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CGACTATGAAGTTTTGATAACTAAAAATTCGGATTATTCAGAGATCCGAA</left_flank>
        <right_flank>TTCCGAAAAGATTTATTTCGCACTTCTCTGGGTACTGTATAGGTTGGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACCACAAAATGGGATCCAGTAGTTCTGGTACATGTATAGAGACTTTGAAATTTGAACAACTTGAATTGAACAGCTTGAGGGGTTCAAAAACGATTATGAGAAGAGCAAATAATTTATTGTAAGTATTTTTGTTTCATGCACACGGAGAATGCTTCTAAAAACTTCAAAATGTGTTTTCAAGCAACTCTAATTTTTTTAAACTTCAATTTTTTGAATGCTCCATTTTGAATGAGCTATAACTCGAAATCGGTTCCTTCACCATACTATTTCAGAACCTGAAATCGGTTTGTTAGGTCACCAGGTTGGTCCTGGAGCAATCAAACTTTATATAGAAAGTCTTGATCGGCTCCGTTTTGGAGCTCATTTAGGAGGTGGTGAATTTAATGCTTATAAAATTAGGAGTATCTTAAAATTCCGATTTTCGAAATTTCCGAATATCCAAAAATTCCGACTATGAAGTTTTGATAACTAAAAATTCGGATTATTCAGAGATCCGAACTTCCGAAAAGATTTATTTCGCACTTCTCTGGGTACTGTATAGGTTGGAAAAAATGAAATCCGGTTGATTCCAGAACACCCAATTTTTGCGAATTTTCGACAACATCTGAATGTTTATTGGACAAGTTGTCCATACTTTGATCATTTTGTCTGAGTAAAAAATTAACTGAATGGTTTGAGGTTGAAAAATATCTGTTTTTTGTGTTTTTTGTCTCCGTCGTAATCTTTTCCGATTGAATTGTTTTCCTATTCCAGAACTCCATCCCTCACTTCAGAGCTTCTATCCAGTTTCTAAAATACTCTCTCCTGAAAGTCCCTTCCCTCGAAAATCGAGAATATTTTTCTCTTTTCGTAGTCTACCTTGCTCACCCATCATGTTTTTGGCGCCGATCTATACGATTTTCTCGGAAGCGTCATGGAAACCCGAAAGCTTTTAAGAATGAAACACGAATTCGGGGGACTTACAGGATTTTTCGAAAAGTGCTCCGATAGACTTCACGG</canonical>
            <polymorphic>GACCACAAAATGGGATCCAGTAGTTCTGGTACATGTATAGAGACTTTGAAATTTGAACAACTTGAATTGAACAGCTTGAGGGGTTCAAAAACGATTATGAGAAGAGCAAATAATTTATTGTAAGTATTTTTGTTTCATGCACACGGAGAATGCTTCTAAAAACTTCAAAATGTGTTTTCAAGCAACTCTAATTTTTTTAAACTTCAATTTTTTGAATGCTCCATTTTGAATGAGCTATAACTCGAAATCGGTTCCTTCACCATACTATTTCAGAACCTGAAATCGGTTTGTTAGGTCACCAGGTTGGTCCTGGAGCAATCAAACTTTATATAGAAAGTCTTGATCGGCTCCGTTTTGGAGCTCATTTAGGAGGTGGTGAATTTAATGCTTATAAAATTAGGAGTATCTTAAAATTCCGATTTTCGAAATTTCCGAATATCCAAAAATTCCGACTATGAAGTTTTGATAACTAAAAATTCGGATTATTCAGAGATCCGAAMTTCCGAAAAGATTTATTTCGCACTTCTCTGGGTACTGTATAGGTTGGAAAAAATGAAATCCGGTTGATTCCAGAACACCCAATTTTTGCGAATTTTCGACAACATCTGAATGTTTATTGGACAAGTTGTCCATACTTTGATCATTTTGTCTGAGTAAAAAATTAACTGAATGGTTTGAGGTTGAAAAATATCTGTTTTTTGTGTTTTTTGTCTCCGTCGTAATCTTTTCCGATTGAATTGTTTTCCTATTCCAGAACTCCATCCCTCACTTCAGAGCTTCTATCCAGTTTCTAAAATACTCTCTCCTGAAAGTCCCTTCCCTCGAAAATCGAGAATATTTTTCTCTTTTCGTAGTCTACCTTGCTCACCCATCATGTTTTTGGCGCCGATCTATACGATTTTCTCGGAAGCGTCATGGAAACCCGAAAGCTTTTAAGAATGAAACACGAATTCGGGGGACTTACAGGATTTTTCGAAAAGTGCTCCGATAGACTTCACGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGGAGGTGGTGAATTTAATG</pcr_primer_p1>
		<pcr_primer_p2>CCAATAAACATTCAGATGTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TTAGGAGGTGGTGAATTTAATGCTTATAAAATTAGGAGTATCTTAAAATTCCGATTTTCGAAATTTCCGAATATCCAAAAATTCCGACTATGAAGTTTTGATAACTAAAAATTCGGATTATTCAGAGATCCGAACTTCCGAAAAGATTTATTTCGCACTTCTCTGGGTACTGTATAGGTTGGAAAAAATGAAATCCGGTTGATTCCAGAACACCCAATTTTTGCGAATTTTCGACAACATCTGAATGTTTATTGG</canonical_amplicon>
		<polymorphic_amplicon>TTAGGAGGTGGTGAATTTAATGCTTATAAAATTAGGAGTATCTTAAAATTCCGATTTTCGAAATTTCCGAATATCCAAAAATTCCGACTATGAAGTTTTGATAACTAAAAATTCGGATTATTCAGAGATCCGAAMTTCCGAAAAGATTTATTTCGCACTTCTCTGGGTACTGTATAGGTTGGAAAAAATGAAATCCGGTTGATTCCAGAACACCCAATTTTTGCGAATTTTCGACAACATCTGAATGTTTATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37202</snp_id>
        <super_contig>c012001267.Contig1</super_contig>
        <contig_pos>52140</contig_pos>
        <strand></strand>
        <context>TTCCAGAACA[C/A]CCAATTTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CTGGGTACTGTATAGGTTGGAAAAAATGAAATCCGGTTGATTCCAGAACA</left_flank>
        <right_flank>CCAATTTTTGCGAATTTTCGACAACATCTGAATGTTTATTGGACAAGTTG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGGGTTCAAAAACGATTATGAGAAGAGCAAATAATTTATTGTAAGTATTTTTGTTTCATGCACACGGAGAATGCTTCTAAAAACTTCAAAATGTGTTTTCAAGCAACTCTAATTTTTTTAAACTTCAATTTTTTGAATGCTCCATTTTGAATGAGCTATAACTCGAAATCGGTTCCTTCACCATACTATTTCAGAACCTGAAATCGGTTTGTTAGGTCACCAGGTTGGTCCTGGAGCAATCAAACTTTATATAGAAAGTCTTGATCGGCTCCGTTTTGGAGCTCATTTAGGAGGTGGTGAATTTAATGCTTATAAAATTAGGAGTATCTTAAAATTCCGATTTTCGAAATTTCCGAATATCCAAAAATTCCGACTATGAAGTTTTGATAACTAAAAATTCGGATTATTCAGAGATCCGAACTTCCGAAAAGATTTATTTCGCACTTCTCTGGGTACTGTATAGGTTGGAAAAAATGAAATCCGGTTGATTCCAGAACACCCAATTTTTGCGAATTTTCGACAACATCTGAATGTTTATTGGACAAGTTGTCCATACTTTGATCATTTTGTCTGAGTAAAAAATTAACTGAATGGTTTGAGGTTGAAAAATATCTGTTTTTTGTGTTTTTTGTCTCCGTCGTAATCTTTTCCGATTGAATTGTTTTCCTATTCCAGAACTCCATCCCTCACTTCAGAGCTTCTATCCAGTTTCTAAAATACTCTCTCCTGAAAGTCCCTTCCCTCGAAAATCGAGAATATTTTTCTCTTTTCGTAGTCTACCTTGCTCACCCATCATGTTTTTGGCGCCGATCTATACGATTTTCTCGGAAGCGTCATGGAAACCCGAAAGCTTTTAAGAATGAAACACGAATTCGGGGGACTTACAGGATTTTTCGAAAAGTGCTCCGATAGACTTCACGGAAGAATAATAACGGGATATTAATGTGAATCGGAGGAAAGAGTCCGAAAAGATCAAGGGGTCCAAAACCGGGATACGGT</canonical>
            <polymorphic>AGGGGTTCAAAAACGATTATGAGAAGAGCAAATAATTTATTGTAAGTATTTTTGTTTCATGCACACGGAGAATGCTTCTAAAAACTTCAAAATGTGTTTTCAAGCAACTCTAATTTTTTTAAACTTCAATTTTTTGAATGCTCCATTTTGAATGAGCTATAACTCGAAATCGGTTCCTTCACCATACTATTTCAGAACCTGAAATCGGTTTGTTAGGTCACCAGGTTGGTCCTGGAGCAATCAAACTTTATATAGAAAGTCTTGATCGGCTCCGTTTTGGAGCTCATTTAGGAGGTGGTGAATTTAATGCTTATAAAATTAGGAGTATCTTAAAATTCCGATTTTCGAAATTTCCGAATATCCAAAAATTCCGACTATGAAGTTTTGATAACTAAAAATTCGGATTATTCAGAGATCCGAACTTCCGAAAAGATTTATTTCGCACTTCTCTGGGTACTGTATAGGTTGGAAAAAATGAAATCCGGTTGATTCCAGAACAMCCAATTTTTGCGAATTTTCGACAACATCTGAATGTTTATTGGACAAGTTGTCCATACTTTGATCATTTTGTCTGAGTAAAAAATTAACTGAATGGTTTGAGGTTGAAAAATATCTGTTTTTTGTGTTTTTTGTCTCCGTCGTAATCTTTTCCGATTGAATTGTTTTCCTATTCCAGAACTCCATCCCTCACTTCAGAGCTTCTATCCAGTTTCTAAAATACTCTCTCCTGAAAGTCCCTTCCCTCGAAAATCGAGAATATTTTTCTCTTTTCGTAGTCTACCTTGCTCACCCATCATGTTTTTGGCGCCGATCTATACGATTTTCTCGGAAGCGTCATGGAAACCCGAAAGCTTTTAAGAATGAAACACGAATTCGGGGGACTTACAGGATTTTTCGAAAAGTGCTCCGATAGACTTCACGGAAGAATAATAACGGGATATTAATGTGAATCGGAGGAAAGAGTCCGAAAAGATCAAGGGGTCCAAAACCGGGATACGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>144 126 99 85 79 77 65 63 55 52 39 36 31 29 15 3 2</canonical_bands>
                <polymorphic_bands>181 144 99 85 79 77 65 63 52 39 36 31 29 15 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGGAGGTGGTGAATTTAATG</pcr_primer_p1>
		<pcr_primer_p2>AAAATGATCAAAGTATGGACAAC</pcr_primer_p2>
		<pcr_amplicon_size>282</pcr_amplicon_size>
		<canonical_amplicon>TTAGGAGGTGGTGAATTTAATGCTTATAAAATTAGGAGTATCTTAAAATTCCGATTTTCGAAATTTCCGAATATCCAAAAATTCCGACTATGAAGTTTTGATAACTAAAAATTCGGATTATTCAGAGATCCGAACTTCCGAAAAGATTTATTTCGCACTTCTCTGGGTACTGTATAGGTTGGAAAAAATGAAATCCGGTTGATTCCAGAACACCCAATTTTTGCGAATTTTCGACAACATCTGAATGTTTATTGGACAAGTTGTCCATACTTTGATCATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTAGGAGGTGGTGAATTTAATGCTTATAAAATTAGGAGTATCTTAAAATTCCGATTTTCGAAATTTCCGAATATCCAAAAATTCCGACTATGAAGTTTTGATAACTAAAAATTCGGATTATTCAGAGATCCGAACTTCCGAAAAGATTTATTTCGCACTTCTCTGGGTACTGTATAGGTTGGAAAAAATGAAATCCGGTTGATTCCAGAACAMCCAATTTTTGCGAATTTTCGACAACATCTGAATGTTTATTGGACAAGTTGTCCATACTTTGATCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37203</snp_id>
        <super_contig>c012001267.Contig1</super_contig>
        <contig_pos>52236</contig_pos>
        <strand></strand>
        <context>AACTGAATGG[T/C]TTGAGGTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGTTGTCCATACTTTGATCATTTTGTCTGAGTAAAAAATTAACTGAATGG</left_flank>
        <right_flank>TTGAGGTTGAAAAATATCTGTTTTTTGTGTTTTTTGTCTCCGTCGTAATC</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCAAGCAACTCTAATTTTTTTAAACTTCAATTTTTTGAATGCTCCATTTTGAATGAGCTATAACTCGAAATCGGTTCCTTCACCATACTATTTCAGAACCTGAAATCGGTTTGTTAGGTCACCAGGTTGGTCCTGGAGCAATCAAACTTTATATAGAAAGTCTTGATCGGCTCCGTTTTGGAGCTCATTTAGGAGGTGGTGAATTTAATGCTTATAAAATTAGGAGTATCTTAAAATTCCGATTTTCGAAATTTCCGAATATCCAAAAATTCCGACTATGAAGTTTTGATAACTAAAAATTCGGATTATTCAGAGATCCGAACTTCCGAAAAGATTTATTTCGCACTTCTCTGGGTACTGTATAGGTTGGAAAAAATGAAATCCGGTTGATTCCAGAACACCCAATTTTTGCGAATTTTCGACAACATCTGAATGTTTATTGGACAAGTTGTCCATACTTTGATCATTTTGTCTGAGTAAAAAATTAACTGAATGGTTTGAGGTTGAAAAATATCTGTTTTTTGTGTTTTTTGTCTCCGTCGTAATCTTTTCCGATTGAATTGTTTTCCTATTCCAGAACTCCATCCCTCACTTCAGAGCTTCTATCCAGTTTCTAAAATACTCTCTCCTGAAAGTCCCTTCCCTCGAAAATCGAGAATATTTTTCTCTTTTCGTAGTCTACCTTGCTCACCCATCATGTTTTTGGCGCCGATCTATACGATTTTCTCGGAAGCGTCATGGAAACCCGAAAGCTTTTAAGAATGAAACACGAATTCGGGGGACTTACAGGATTTTTCGAAAAGTGCTCCGATAGACTTCACGGAAGAATAATAACGGGATATTAATGTGAATCGGAGGAAAGAGTCCGAAAAGATCAAGGGGTCCAAAACCGGGATACGGTAACGGAGTACCTTGATAAGTTGGATTTCAGATTAAAAATCTGAAAAAAGTTTCATAACGATACAGAACATCAAAATGCGGAAAAATCCAGTTTCGT</canonical>
            <polymorphic>TTTTCAAGCAACTCTAATTTTTTTAAACTTCAATTTTTTGAATGCTCCATTTTGAATGAGCTATAACTCGAAATCGGTTCCTTCACCATACTATTTCAGAACCTGAAATCGGTTTGTTAGGTCACCAGGTTGGTCCTGGAGCAATCAAACTTTATATAGAAAGTCTTGATCGGCTCCGTTTTGGAGCTCATTTAGGAGGTGGTGAATTTAATGCTTATAAAATTAGGAGTATCTTAAAATTCCGATTTTCGAAATTTCCGAATATCCAAAAATTCCGACTATGAAGTTTTGATAACTAAAAATTCGGATTATTCAGAGATCCGAACTTCCGAAAAGATTTATTTCGCACTTCTCTGGGTACTGTATAGGTTGGAAAAAATGAAATCCGGTTGATTCCAGAACACCCAATTTTTGCGAATTTTCGACAACATCTGAATGTTTATTGGACAAGTTGTCCATACTTTGATCATTTTGTCTGAGTAAAAAATTAACTGAATGGYTTGAGGTTGAAAAATATCTGTTTTTTGTGTTTTTTGTCTCCGTCGTAATCTTTTCCGATTGAATTGTTTTCCTATTCCAGAACTCCATCCCTCACTTCAGAGCTTCTATCCAGTTTCTAAAATACTCTCTCCTGAAAGTCCCTTCCCTCGAAAATCGAGAATATTTTTCTCTTTTCGTAGTCTACCTTGCTCACCCATCATGTTTTTGGCGCCGATCTATACGATTTTCTCGGAAGCGTCATGGAAACCCGAAAGCTTTTAAGAATGAAACACGAATTCGGGGGACTTACAGGATTTTTCGAAAAGTGCTCCGATAGACTTCACGGAAGAATAATAACGGGATATTAATGTGAATCGGAGGAAAGAGTCCGAAAAGATCAAGGGGTCCAAAACCGGGATACGGTAACGGAGTACCTTGATAAGTTGGATTTCAGATTAAAAATCTGAAAAAAGTTTCATAACGATACAGAACATCAAAATGCGGAAAAATCCAGTTTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGAAATCCGGTTGAT</pcr_primer_p1>
		<pcr_primer_p2>TAGAAACTGGATAGAAGCTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGAAATCCGGTTGATTCCAGAACACCCAATTTTTGCGAATTTTCGACAACATCTGAATGTTTATTGGACAAGTTGTCCATACTTTGATCATTTTGTCTGAGTAAAAAATTAACTGAATGGTTTGAGGTTGAAAAATATCTGTTTTTTGTGTTTTTTGTCTCCGTCGTAATCTTTTCCGATTGAATTGTTTTCCTATTCCAGAACTCCATCCCTCACTTCAGAGCTTCTATCCAGTTTCTA</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGAAATCCGGTTGATTCCAGAACACCCAATTTTTGCGAATTTTCGACAACATCTGAATGTTTATTGGACAAGTTGTCCATACTTTGATCATTTTGTCTGAGTAAAAAATTAACTGAATGGYTTGAGGTTGAAAAATATCTGTTTTTTGTGTTTTTTGTCTCCGTCGTAATCTTTTCCGATTGAATTGTTTTCCTATTCCAGAACTCCATCCCTCACTTCAGAGCTTCTATCCAGTTTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37204</snp_id>
        <super_contig>c012001267.Contig1</super_contig>
        <contig_pos>53035</contig_pos>
        <strand>+</strand>
        <context>ACCGTTTCTT[A/G]ATATCATTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTTCAAACTGAAAACAGTCCAAATAATAAAATTTTGGACCGTTTCTT</left_flank>
        <right_flank>ATATCATTATTGAAATTAGGCCTTCTTTCTGAAGTGCTCACTTTTTTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAAAAGTGCTCCGATAGACTTCACGGAAGAATAATAACGGGATATTAATGTGAATCGGAGGAAAGAGTCCGAAAAGATCAAGGGGTCCAAAACCGGGATACGGTAACGGAGTACCTTGATAAGTTGGATTTCAGATTAAAAATCTGAAAAAAGTTTCATAACGATACAGAACATCAAAATGCGGAAAAATCCAGTTTCGTAATTTCCTTTAAAACTATAAAACAAAATTTTATTCTTAAAGAAATAAAAAACTAGATCTATTAGTCAGTATAAAAAGAAAGATGTGTTAGATTTGCATAATGGGAAGTCTAGTTTTCATGCCTTTTTCATTTCCAATTTTCATGTAATTCTAACATATAAGTAATTTTAAAATGCAGTAACAACCAAAATTTTATAATTTTCTATATTTTTTTTTCTTTAAATTTTATAATTTTCTTTATTTCATCAAAATTTTCAAACTGAAAACAGTCCAAATAATAAAATTTTGGACCGTTTCTTGATATCATTATTGAAATTAGGCCTTCTTTCTGAAGTGCTCACTTTTTTCGATTGTTCAATTTTTTGCTCGATTTTTTCGATTTTATTAAAAACTTTTGTATGAAAATAAGTCCTTTTTGAATTGAACTGAAAAATTAAATCTAAATTAAATATTTTTAGTTCCAAGTCTAGTAGCATGGAATTTAAATAGAAAATACTTTCTCCCGCCTTCTAAGCGGAAAATGAGGAATTTGCGCCAAGGTTACCTTATCGACTTACAGAACATTATGGTTTTCCTTCTTTGTTAAAACCAAAAAAAGAAAAATCACAAATGTCACCTGATTTGATTTTCCAAGTTGTTTTTCTGAACATTTCTAAATCAATTTTACGCATAACATCGAAAAATCAGTGTTTAGGGCAGTCTTGATTTTGAGCTCTCAGAAACGGATAAGCGTTTTTTTTTCCTAAAAAAGCTAATCAACAATTTTCTATCGGTGAGCTCACAAAAGTTGACGATTTCGA</canonical>
            <polymorphic>CGAAAAGTGCTCCGATAGACTTCACGGAAGAATAATAACGGGATATTAATGTGAATCGGAGGAAAGAGTCCGAAAAGATCAAGGGGTCCAAAACCGGGATACGGTAACGGAGTACCTTGATAAGTTGGATTTCAGATTAAAAATCTGAAAAAAGTTTCATAACGATACAGAACATCAAAATGCGGAAAAATCCAGTTTCGTAATTTCCTTTAAAACTATAAAACAAAATTTTATTCTTAAAGAAATAAAAAACTAGATCTATTAGTCAGTATAAAAAGAAAGATGTGTTAGATTTGCATAATGGGAAGTCTAGTTTTCATGCCTTTTTCATTTCCAATTTTCATGTAATTCTAACATATAAGTAATTTTAAAATGCAGTAACAACCAAAATTTTATAATTTTCTATATTTTTTTTTCTTTAAATTTTATAATTTTCTTTATTTCATCAAAATTTTCAAACTGAAAACAGTCCAAATAATAAAATTTTGGACCGTTTCTTRATATCATTATTGAAATTAGGCCTTCTTTCTGAAGTGCTCACTTTTTTCGATTGTTCAATTTTTTGCTCGATTTTTTCGATTTTATTAAAAACTTTTGTATGAAAATAAGTCCTTTTTGAATTGAACTGAAAAATTAAATCTAAATTAAATATTTTTAGTTCCAAGTCTAGTAGCATGGAATTTAAATAGAAAATACTTTCTCCCGCCTTCTAAGCGGAAAATGAGGAATTTGCGCCAAGGTTACCTTATCGACTTACAGAACATTATGGTTTTCCTTCTTTGTTAAAACCAAAAAAAGAAAAATCACAAATGTCACCTGATTTGATTTTCCAAGTTGTTTTTCTGAACATTTCTAAATCAATTTTACGCATAACATCGAAAAATCAGTGTTTAGGGCAGTCTTGATTTTGAGCTCTCAGAAACGGATAAGCGTTTTTTTTTCCTAAAAAAGCTAATCAACAATTTTCTATCGGTGAGCTCACAAAAGTTGACGATTTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>497 404 99</canonical_bands>
                <polymorphic_bands>901 99</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCATTTCCAATTTTCATGT</pcr_primer_p1>
		<pcr_primer_p2>TTCTATTTAAATTCCATGCTACTAGA</pcr_primer_p2>
		<pcr_amplicon_size>367</pcr_amplicon_size>
		<canonical_amplicon>TTTTCATTTCCAATTTTCATGTAATTCTAACATATAAGTAATTTTAAAATGCAGTAACAACCAAAATTTTATAATTTTCTATATTTTTTTTTCTTTAAATTTTATAATTTTCTTTATTTCATCAAAATTTTCAAACTGAAAACAGTCCAAATAATAAAATTTTGGACCGTTTCTTGATATCATTATTGAAATTAGGCCTTCTTTCTGAAGTGCTCACTTTTTTCGATTGTTCAATTTTTTGCTCGATTTTTTCGATTTTATTAAAAACTTTTGTATGAAAATAAGTCCTTTTTGAATTGAACTGAAAAATTAAATCTAAATTAAATATTTTTAGTTCCAAGTCTAGTAGCATGGAATTTAAATAGAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCATTTCCAATTTTCATGTAATTCTAACATATAAGTAATTTTAAAATGCAGTAACAACCAAAATTTTATAATTTTCTATATTTTTTTTTCTTTAAATTTTATAATTTTCTTTATTTCATCAAAATTTTCAAACTGAAAACAGTCCAAATAATAAAATTTTGGACCGTTTCTTRATATCATTATTGAAATTAGGCCTTCTTTCTGAAGTGCTCACTTTTTTCGATTGTTCAATTTTTTGCTCGATTTTTTCGATTTTATTAAAAACTTTTGTATGAAAATAAGTCCTTTTTGAATTGAACTGAAAAATTAAATCTAAATTAAATATTTTTAGTTCCAAGTCTAGTAGCATGGAATTTAAATAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37205</snp_id>
        <super_contig>c012001267.Contig1</super_contig>
        <contig_pos>53153</contig_pos>
        <strand>+</strand>
        <context>AGTCCTTTTT[A/G]AATTGAACTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGATTTTTTCGATTTTATTAAAAACTTTTGTATGAAAATAAGTCCTTTTT</left_flank>
        <right_flank>AATTGAACTGAAAAATTAAATCTAAATTAAATATTTTTAGTTCCAAGTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAAGTTGGATTTCAGATTAAAAATCTGAAAAAAGTTTCATAACGATACAGAACATCAAAATGCGGAAAAATCCAGTTTCGTAATTTCCTTTAAAACTATAAAACAAAATTTTATTCTTAAAGAAATAAAAAACTAGATCTATTAGTCAGTATAAAAAGAAAGATGTGTTAGATTTGCATAATGGGAAGTCTAGTTTTCATGCCTTTTTCATTTCCAATTTTCATGTAATTCTAACATATAAGTAATTTTAAAATGCAGTAACAACCAAAATTTTATAATTTTCTATATTTTTTTTTCTTTAAATTTTATAATTTTCTTTATTTCATCAAAATTTTCAAACTGAAAACAGTCCAAATAATAAAATTTTGGACCGTTTCTTGATATCATTATTGAAATTAGGCCTTCTTTCTGAAGTGCTCACTTTTTTCGATTGTTCAATTTTTTGCTCGATTTTTTCGATTTTATTAAAAACTTTTGTATGAAAATAAGTCCTTTTTGAATTGAACTGAAAAATTAAATCTAAATTAAATATTTTTAGTTCCAAGTCTAGTAGCATGGAATTTAAATAGAAAATACTTTCTCCCGCCTTCTAAGCGGAAAATGAGGAATTTGCGCCAAGGTTACCTTATCGACTTACAGAACATTATGGTTTTCCTTCTTTGTTAAAACCAAAAAAAGAAAAATCACAAATGTCACCTGATTTGATTTTCCAAGTTGTTTTTCTGAACATTTCTAAATCAATTTTACGCATAACATCGAAAAATCAGTGTTTAGGGCAGTCTTGATTTTGAGCTCTCAGAAACGGATAAGCGTTTTTTTTTCCTAAAAAAGCTAATCAACAATTTTCTATCGGTGAGCTCACAAAAGTTGACGATTTCGAAAAATTCGATTAAAAATTTTATTTACCATGTTCAAGGATTTTTCAAGCTCAGATCAATAAATGAAACGCATAAATCTTCTTAGAATATTTTTATTAGATAGGACTTCGAACCTAAGTT</canonical>
            <polymorphic>GATAAGTTGGATTTCAGATTAAAAATCTGAAAAAAGTTTCATAACGATACAGAACATCAAAATGCGGAAAAATCCAGTTTCGTAATTTCCTTTAAAACTATAAAACAAAATTTTATTCTTAAAGAAATAAAAAACTAGATCTATTAGTCAGTATAAAAAGAAAGATGTGTTAGATTTGCATAATGGGAAGTCTAGTTTTCATGCCTTTTTCATTTCCAATTTTCATGTAATTCTAACATATAAGTAATTTTAAAATGCAGTAACAACCAAAATTTTATAATTTTCTATATTTTTTTTTCTTTAAATTTTATAATTTTCTTTATTTCATCAAAATTTTCAAACTGAAAACAGTCCAAATAATAAAATTTTGGACCGTTTCTTGATATCATTATTGAAATTAGGCCTTCTTTCTGAAGTGCTCACTTTTTTCGATTGTTCAATTTTTTGCTCGATTTTTTCGATTTTATTAAAAACTTTTGTATGAAAATAAGTCCTTTTTRAATTGAACTGAAAAATTAAATCTAAATTAAATATTTTTAGTTCCAAGTCTAGTAGCATGGAATTTAAATAGAAAATACTTTCTCCCGCCTTCTAAGCGGAAAATGAGGAATTTGCGCCAAGGTTACCTTATCGACTTACAGAACATTATGGTTTTCCTTCTTTGTTAAAACCAAAAAAAGAAAAATCACAAATGTCACCTGATTTGATTTTCCAAGTTGTTTTTCTGAACATTTCTAAATCAATTTTACGCATAACATCGAAAAATCAGTGTTTAGGGCAGTCTTGATTTTGAGCTCTCAGAAACGGATAAGCGTTTTTTTTTCCTAAAAAAGCTAATCAACAATTTTCTATCGGTGAGCTCACAAAAGTTGACGATTTCGAAAAATTCGATTAAAAATTTTATTTACCATGTTCAAGGATTTTTCAAGCTCAGATCAATAAATGAAACGCATAAATCTTCTTAGAATATTTTTATTAGATAGGACTTCGAACCTAAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTAGGCCTTCTTTCTGAAGT</pcr_primer_p1>
		<pcr_primer_p2>TGTTCTGTAAGTCGATAAGGTAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTAGGCCTTCTTTCTGAAGTGCTCACTTTTTTCGATTGTTCAATTTTTTGCTCGATTTTTTCGATTTTATTAAAAACTTTTGTATGAAAATAAGTCCTTTTTGAATTGAACTGAAAAATTAAATCTAAATTAAATATTTTTAGTTCCAAGTCTAGTAGCATGGAATTTAAATAGAAAATACTTTCTCCCGCCTTCTAAGCGGAAAATGAGGAATTTGCGCCAAGGTTACCTTATCGACTTACAGAACA</canonical_amplicon>
		<polymorphic_amplicon>AATTAGGCCTTCTTTCTGAAGTGCTCACTTTTTTCGATTGTTCAATTTTTTGCTCGATTTTTTCGATTTTATTAAAAACTTTTGTATGAAAATAAGTCCTTTTTRAATTGAACTGAAAAATTAAATCTAAATTAAATATTTTTAGTTCCAAGTCTAGTAGCATGGAATTTAAATAGAAAATACTTTCTCCCGCCTTCTAAGCGGAAAATGAGGAATTTGCGCCAAGGTTACCTTATCGACTTACAGAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37206</snp_id>
        <super_contig>c012001267.Contig1</super_contig>
        <contig_pos>53200</contig_pos>
        <strand>+</strand>
        <context>ttaGTTCCAA[A/G]TCTAGTAGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGAATTGAACTGAAAAATTAAATCTAAATTAAATATTTTTAGTTCCAA</left_flank>
        <right_flank>TCTAGTAGCATGGAATTTAAATAGAAAATACTTTCTCCCGCCTTCTAAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACAGAACATCAAAATGCGGAAAAATCCAGTTTCGTAATTTCCTTTAAAACTATAAAACAAAATTTTATTCTTAAAGAAATAAAAAACTAGATCTATTAGTCAGTATAAAAAGAAAGATGTGTTAGATTTGCATAATGGGAAGTCTAGTTTTCATGCCTTTTTCATTTCCAATTTTCATGTAATTCTAACATATAAGTAATTTTAAAATGCAGTAACAACCAAAATTTTATAATTTTCTATATTTTTTTTTCTTTAAATTTTATAATTTTCTTTATTTCATCAAAATTTTCAAACTGAAAACAGTCCAAATAATAAAATTTTGGACCGTTTCTTGATATCATTATTGAAATTAGGCCTTCTTTCTGAAGTGCTCACTTTTTTCGATTGTTCAATTTTTTGCTCGATTTTTTCGATTTTATTAAAAACTTTTGTATGAAAATAAGTCCTTTTTGAATTGAACTGAAAAATTAAATCTAAATTAAATATTTTTAGTTCCAAGTCTAGTAGCATGGAATTTAAATAGAAAATACTTTCTCCCGCCTTCTAAGCGGAAAATGAGGAATTTGCGCCAAGGTTACCTTATCGACTTACAGAACATTATGGTTTTCCTTCTTTGTTAAAACCAAAAAAAGAAAAATCACAAATGTCACCTGATTTGATTTTCCAAGTTGTTTTTCTGAACATTTCTAAATCAATTTTACGCATAACATCGAAAAATCAGTGTTTAGGGCAGTCTTGATTTTGAGCTCTCAGAAACGGATAAGCGTTTTTTTTTCCTAAAAAAGCTAATCAACAATTTTCTATCGGTGAGCTCACAAAAGTTGACGATTTCGAAAAATTCGATTAAAAATTTTATTTACCATGTTCAAGGATTTTTCAAGCTCAGATCAATAAATGAAACGCATAAATCTTCTTAGAATATTTTTATTAGATAGGACTTCGAACCTAAGTTTCGAATATTAGGGAAAAAAATTTGAGCTCAAATTTCAAATGGACCAC</canonical>
            <polymorphic>TACAGAACATCAAAATGCGGAAAAATCCAGTTTCGTAATTTCCTTTAAAACTATAAAACAAAATTTTATTCTTAAAGAAATAAAAAACTAGATCTATTAGTCAGTATAAAAAGAAAGATGTGTTAGATTTGCATAATGGGAAGTCTAGTTTTCATGCCTTTTTCATTTCCAATTTTCATGTAATTCTAACATATAAGTAATTTTAAAATGCAGTAACAACCAAAATTTTATAATTTTCTATATTTTTTTTTCTTTAAATTTTATAATTTTCTTTATTTCATCAAAATTTTCAAACTGAAAACAGTCCAAATAATAAAATTTTGGACCGTTTCTTGATATCATTATTGAAATTAGGCCTTCTTTCTGAAGTGCTCACTTTTTTCGATTGTTCAATTTTTTGCTCGATTTTTTCGATTTTATTAAAAACTTTTGTATGAAAATAAGTCCTTTTTGAATTGAACTGAAAAATTAAATCTAAATTAAATATTTTTAGTTCCAARTCTAGTAGCATGGAATTTAAATAGAAAATACTTTCTCCCGCCTTCTAAGCGGAAAATGAGGAATTTGCGCCAAGGTTACCTTATCGACTTACAGAACATTATGGTTTTCCTTCTTTGTTAAAACCAAAAAAAGAAAAATCACAAATGTCACCTGATTTGATTTTCCAAGTTGTTTTTCTGAACATTTCTAAATCAATTTTACGCATAACATCGAAAAATCAGTGTTTAGGGCAGTCTTGATTTTGAGCTCTCAGAAACGGATAAGCGTTTTTTTTTCCTAAAAAAGCTAATCAACAATTTTCTATCGGTGAGCTCACAAAAGTTGACGATTTCGAAAAATTCGATTAAAAATTTTATTTACCATGTTCAAGGATTTTTCAAGCTCAGATCAATAAATGAAACGCATAAATCTTCTTAGAATATTTTTATTAGATAGGACTTCGAACCTAAGTTTCGAATATTAGGGAAAAAAATTTGAGCTCAAATTTCAAATGGACCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTAGGCCTTCTTTCTGAAGT</pcr_primer_p1>
		<pcr_primer_p2>TGTTCTGTAAGTCGATAAGGTAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTAGGCCTTCTTTCTGAAGTGCTCACTTTTTTCGATTGTTCAATTTTTTGCTCGATTTTTTCGATTTTATTAAAAACTTTTGTATGAAAATAAGTCCTTTTTGAATTGAACTGAAAAATTAAATCTAAATTAAATATTTTTAGTTCCAAGTCTAGTAGCATGGAATTTAAATAGAAAATACTTTCTCCCGCCTTCTAAGCGGAAAATGAGGAATTTGCGCCAAGGTTACCTTATCGACTTACAGAACA</canonical_amplicon>
		<polymorphic_amplicon>AATTAGGCCTTCTTTCTGAAGTGCTCACTTTTTTCGATTGTTCAATTTTTTGCTCGATTTTTTCGATTTTATTAAAAACTTTTGTATGAAAATAAGTCCTTTTTGAATTGAACTGAAAAATTAAATCTAAATTAAATATTTTTAGTTCCAARTCTAGTAGCATGGAATTTAAATAGAAAATACTTTCTCCCGCCTTCTAAGCGGAAAATGAGGAATTTGCGCCAAGGTTACCTTATCGACTTACAGAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37207</snp_id>
        <super_contig>c012001267.Contig1</super_contig>
        <contig_pos>53256</contig_pos>
        <strand>+</strand>
        <context>TAAGCGGAAA[A/T]TGAGGAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGCATGGAATTTAAATAGAAAATACTTTCTCCCGCCTTCTAAGCGGAAA</left_flank>
        <right_flank>TGAGGAATTTGCGCCAAGGTTACCTTATCGACTTACAGAACATTATGGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAAAATTTTATTCTTAAAGAAATAAAAAACTAGATCTATTAGTCAGTATAAAAAGAAAGATGTGTTAGATTTGCATAATGGGAAGTCTAGTTTTCATGCCTTTTTCATTTCCAATTTTCATGTAATTCTAACATATAAGTAATTTTAAAATGCAGTAACAACCAAAATTTTATAATTTTCTATATTTTTTTTTCTTTAAATTTTATAATTTTCTTTATTTCATCAAAATTTTCAAACTGAAAACAGTCCAAATAATAAAATTTTGGACCGTTTCTTGATATCATTATTGAAATTAGGCCTTCTTTCTGAAGTGCTCACTTTTTTCGATTGTTCAATTTTTTGCTCGATTTTTTCGATTTTATTAAAAACTTTTGTATGAAAATAAGTCCTTTTTGAATTGAACTGAAAAATTAAATCTAAATTAAATATTTTTAGTTCCAAGTCTAGTAGCATGGAATTTAAATAGAAAATACTTTCTCCCGCCTTCTAAGCGGAAAATGAGGAATTTGCGCCAAGGTTACCTTATCGACTTACAGAACATTATGGTTTTCCTTCTTTGTTAAAACCAAAAAAAGAAAAATCACAAATGTCACCTGATTTGATTTTCCAAGTTGTTTTTCTGAACATTTCTAAATCAATTTTACGCATAACATCGAAAAATCAGTGTTTAGGGCAGTCTTGATTTTGAGCTCTCAGAAACGGATAAGCGTTTTTTTTTCCTAAAAAAGCTAATCAACAATTTTCTATCGGTGAGCTCACAAAAGTTGACGATTTCGAAAAATTCGATTAAAAATTTTATTTACCATGTTCAAGGATTTTTCAAGCTCAGATCAATAAATGAAACGCATAAATCTTCTTAGAATATTTTTATTAGATAGGACTTCGAACCTAAGTTTCGAATATTAGGGAAAAAAATTTGAGCTCAAATTTCAAATGGACCACCTATGTCAAAACTGAAAATCTAGAAAATTATTATTTCAAAATTTGAAAAGAAGTCA</canonical>
            <polymorphic>AACAAAATTTTATTCTTAAAGAAATAAAAAACTAGATCTATTAGTCAGTATAAAAAGAAAGATGTGTTAGATTTGCATAATGGGAAGTCTAGTTTTCATGCCTTTTTCATTTCCAATTTTCATGTAATTCTAACATATAAGTAATTTTAAAATGCAGTAACAACCAAAATTTTATAATTTTCTATATTTTTTTTTCTTTAAATTTTATAATTTTCTTTATTTCATCAAAATTTTCAAACTGAAAACAGTCCAAATAATAAAATTTTGGACCGTTTCTTGATATCATTATTGAAATTAGGCCTTCTTTCTGAAGTGCTCACTTTTTTCGATTGTTCAATTTTTTGCTCGATTTTTTCGATTTTATTAAAAACTTTTGTATGAAAATAAGTCCTTTTTGAATTGAACTGAAAAATTAAATCTAAATTAAATATTTTTAGTTCCAAGTCTAGTAGCATGGAATTTAAATAGAAAATACTTTCTCCCGCCTTCTAAGCGGAAAWTGAGGAATTTGCGCCAAGGTTACCTTATCGACTTACAGAACATTATGGTTTTCCTTCTTTGTTAAAACCAAAAAAAGAAAAATCACAAATGTCACCTGATTTGATTTTCCAAGTTGTTTTTCTGAACATTTCTAAATCAATTTTACGCATAACATCGAAAAATCAGTGTTTAGGGCAGTCTTGATTTTGAGCTCTCAGAAACGGATAAGCGTTTTTTTTTCCTAAAAAAGCTAATCAACAATTTTCTATCGGTGAGCTCACAAAAGTTGACGATTTCGAAAAATTCGATTAAAAATTTTATTTACCATGTTCAAGGATTTTTCAAGCTCAGATCAATAAATGAAACGCATAAATCTTCTTAGAATATTTTTATTAGATAGGACTTCGAACCTAAGTTTCGAATATTAGGGAAAAAAATTTGAGCTCAAATTTCAAATGGACCACCTATGTCAAAACTGAAAATCTAGAAAATTATTATTTCAAAATTTGAAAAGAAGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTTTTGTATGAAAATAAGTCC</pcr_primer_p1>
		<pcr_primer_p2>ACAACTTGGAAAATCAAATCAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAACTTTTGTATGAAAATAAGTCCTTTTTGAATTGAACTGAAAAATTAAATCTAAATTAAATATTTTTAGTTCCAAGTCTAGTAGCATGGAATTTAAATAGAAAATACTTTCTCCCGCCTTCTAAGCGGAAAATGAGGAATTTGCGCCAAGGTTACCTTATCGACTTACAGAACATTATGGTTTTCCTTCTTTGTTAAAACCAAAAAAAGAAAAATCACAAATGTCACCTGATTTGATTTTCCAAGTTGT</canonical_amplicon>
		<polymorphic_amplicon>AAAACTTTTGTATGAAAATAAGTCCTTTTTGAATTGAACTGAAAAATTAAATCTAAATTAAATATTTTTAGTTCCAAGTCTAGTAGCATGGAATTTAAATAGAAAATACTTTCTCCCGCCTTCTAAGCGGAAAWTGAGGAATTTGCGCCAAGGTTACCTTATCGACTTACAGAACATTATGGTTTTCCTTCTTTGTTAAAACCAAAAAAAGAAAAATCACAAATGTCACCTGATTTGATTTTCCAAGTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37208</snp_id>
        <super_contig>c012001267.Contig1</super_contig>
        <contig_pos>53267</contig_pos>
        <strand>+</strand>
        <context>TGAGGAATTT[C/G]CGCCAAGGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTAAATAGAAAATACTTTCTCCCGCCTTCTAAGCGGAAAATGAGGAATTT</left_flank>
        <right_flank>CGCCAAGGTTACCTTATCGACTTACAGAACATTATGGTTTTCCTTCTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCTTAAAGAAATAAAAAACTAGATCTATTAGTCAGTATAAAAAGAAAGATGTGTTAGATTTGCATAATGGGAAGTCTAGTTTTCATGCCTTTTTCATTTCCAATTTTCATGTAATTCTAACATATAAGTAATTTTAAAATGCAGTAACAACCAAAATTTTATAATTTTCTATATTTTTTTTTCTTTAAATTTTATAATTTTCTTTATTTCATCAAAATTTTCAAACTGAAAACAGTCCAAATAATAAAATTTTGGACCGTTTCTTGATATCATTATTGAAATTAGGCCTTCTTTCTGAAGTGCTCACTTTTTTCGATTGTTCAATTTTTTGCTCGATTTTTTCGATTTTATTAAAAACTTTTGTATGAAAATAAGTCCTTTTTGAATTGAACTGAAAAATTAAATCTAAATTAAATATTTTTAGTTCCAAGTCTAGTAGCATGGAATTTAAATAGAAAATACTTTCTCCCGCCTTCTAAGCGGAAAATGAGGAATTTGCGCCAAGGTTACCTTATCGACTTACAGAACATTATGGTTTTCCTTCTTTGTTAAAACCAAAAAAAGAAAAATCACAAATGTCACCTGATTTGATTTTCCAAGTTGTTTTTCTGAACATTTCTAAATCAATTTTACGCATAACATCGAAAAATCAGTGTTTAGGGCAGTCTTGATTTTGAGCTCTCAGAAACGGATAAGCGTTTTTTTTTCCTAAAAAAGCTAATCAACAATTTTCTATCGGTGAGCTCACAAAAGTTGACGATTTCGAAAAATTCGATTAAAAATTTTATTTACCATGTTCAAGGATTTTTCAAGCTCAGATCAATAAATGAAACGCATAAATCTTCTTAGAATATTTTTATTAGATAGGACTTCGAACCTAAGTTTCGAATATTAGGGAAAAAAATTTGAGCTCAAATTTCAAATGGACCACCTATGTCAAAACTGAAAATCTAGAAAATTATTATTTCAAAATTTGAAAAGAAGTCAAAGAAAAATAC</canonical>
            <polymorphic>ATTCTTAAAGAAATAAAAAACTAGATCTATTAGTCAGTATAAAAAGAAAGATGTGTTAGATTTGCATAATGGGAAGTCTAGTTTTCATGCCTTTTTCATTTCCAATTTTCATGTAATTCTAACATATAAGTAATTTTAAAATGCAGTAACAACCAAAATTTTATAATTTTCTATATTTTTTTTTCTTTAAATTTTATAATTTTCTTTATTTCATCAAAATTTTCAAACTGAAAACAGTCCAAATAATAAAATTTTGGACCGTTTCTTGATATCATTATTGAAATTAGGCCTTCTTTCTGAAGTGCTCACTTTTTTCGATTGTTCAATTTTTTGCTCGATTTTTTCGATTTTATTAAAAACTTTTGTATGAAAATAAGTCCTTTTTGAATTGAACTGAAAAATTAAATCTAAATTAAATATTTTTAGTTCCAAGTCTAGTAGCATGGAATTTAAATAGAAAATACTTTCTCCCGCCTTCTAAGCGGAAAATGAGGAATTTSCGCCAAGGTTACCTTATCGACTTACAGAACATTATGGTTTTCCTTCTTTGTTAAAACCAAAAAAAGAAAAATCACAAATGTCACCTGATTTGATTTTCCAAGTTGTTTTTCTGAACATTTCTAAATCAATTTTACGCATAACATCGAAAAATCAGTGTTTAGGGCAGTCTTGATTTTGAGCTCTCAGAAACGGATAAGCGTTTTTTTTTCCTAAAAAAGCTAATCAACAATTTTCTATCGGTGAGCTCACAAAAGTTGACGATTTCGAAAAATTCGATTAAAAATTTTATTTACCATGTTCAAGGATTTTTCAAGCTCAGATCAATAAATGAAACGCATAAATCTTCTTAGAATATTTTTATTAGATAGGACTTCGAACCTAAGTTTCGAATATTAGGGAAAAAAATTTGAGCTCAAATTTCAAATGGACCACCTATGTCAAAACTGAAAATCTAGAAAATTATTATTTCAAAATTTGAAAAGAAGTCAAAGAAAAATAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTAGCATGGAATTTAAATAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTGAGAGCTCAAAATCAAGACT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGTAGCATGGAATTTAAATAGAAAATACTTTCTCCCGCCTTCTAAGCGGAAAATGAGGAATTTGCGCCAAGGTTACCTTATCGACTTACAGAACATTATGGTTTTCCTTCTTTGTTAAAACCAAAAAAAGAAAAATCACAAATGTCACCTGATTTGATTTTCCAAGTTGTTTTTCTGAACATTTCTAAATCAATTTTACGCATAACATCGAAAAATCAGTGTTTAGGGCAGTCTTGATTTTGAGCTCTCAG</canonical_amplicon>
		<polymorphic_amplicon>AGTAGCATGGAATTTAAATAGAAAATACTTTCTCCCGCCTTCTAAGCGGAAAATGAGGAATTTSCGCCAAGGTTACCTTATCGACTTACAGAACATTATGGTTTTCCTTCTTTGTTAAAACCAAAAAAAGAAAAATCACAAATGTCACCTGATTTGATTTTCCAAGTTGTTTTTCTGAACATTTCTAAATCAATTTTACGCATAACATCGAAAAATCAGTGTTTAGGGCAGTCTTGATTTTGAGCTCTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37209</snp_id>
        <super_contig>c012001267.Contig1</super_contig>
        <contig_pos>53301</contig_pos>
        <strand>+</strand>
        <context>ACAGAACATT[A/G]TGGTTTTCCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAAAATGAGGAATTTGCGCCAAGGTTACCTTATCGACTTACAGAACATT</left_flank>
        <right_flank>TGGTTTTCCTTCTTTGTTAAAACCAAAAAAAGAAAAATCACAAATGTCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTATAAAAAGAAAGATGTGTTAGATTTGCATAATGGGAAGTCTAGTTTTCATGCCTTTTTCATTTCCAATTTTCATGTAATTCTAACATATAAGTAATTTTAAAATGCAGTAACAACCAAAATTTTATAATTTTCTATATTTTTTTTTCTTTAAATTTTATAATTTTCTTTATTTCATCAAAATTTTCAAACTGAAAACAGTCCAAATAATAAAATTTTGGACCGTTTCTTGATATCATTATTGAAATTAGGCCTTCTTTCTGAAGTGCTCACTTTTTTCGATTGTTCAATTTTTTGCTCGATTTTTTCGATTTTATTAAAAACTTTTGTATGAAAATAAGTCCTTTTTGAATTGAACTGAAAAATTAAATCTAAATTAAATATTTTTAGTTCCAAGTCTAGTAGCATGGAATTTAAATAGAAAATACTTTCTCCCGCCTTCTAAGCGGAAAATGAGGAATTTGCGCCAAGGTTACCTTATCGACTTACAGAACATTATGGTTTTCCTTCTTTGTTAAAACCAAAAAAAGAAAAATCACAAATGTCACCTGATTTGATTTTCCAAGTTGTTTTTCTGAACATTTCTAAATCAATTTTACGCATAACATCGAAAAATCAGTGTTTAGGGCAGTCTTGATTTTGAGCTCTCAGAAACGGATAAGCGTTTTTTTTTCCTAAAAAAGCTAATCAACAATTTTCTATCGGTGAGCTCACAAAAGTTGACGATTTCGAAAAATTCGATTAAAAATTTTATTTACCATGTTCAAGGATTTTTCAAGCTCAGATCAATAAATGAAACGCATAAATCTTCTTAGAATATTTTTATTAGATAGGACTTCGAACCTAAGTTTCGAATATTAGGGAAAAAAATTTGAGCTCAAATTTCAAATGGACCACCTATGTCAAAACTGAAAATCTAGAAAATTATTATTTCAAAATTTGAAAAGAAGTCAAAGAAAAATACATCTTTTAATTGGCTTAAAGTCTTAAAAACCTAT</canonical>
            <polymorphic>CAGTATAAAAAGAAAGATGTGTTAGATTTGCATAATGGGAAGTCTAGTTTTCATGCCTTTTTCATTTCCAATTTTCATGTAATTCTAACATATAAGTAATTTTAAAATGCAGTAACAACCAAAATTTTATAATTTTCTATATTTTTTTTTCTTTAAATTTTATAATTTTCTTTATTTCATCAAAATTTTCAAACTGAAAACAGTCCAAATAATAAAATTTTGGACCGTTTCTTGATATCATTATTGAAATTAGGCCTTCTTTCTGAAGTGCTCACTTTTTTCGATTGTTCAATTTTTTGCTCGATTTTTTCGATTTTATTAAAAACTTTTGTATGAAAATAAGTCCTTTTTGAATTGAACTGAAAAATTAAATCTAAATTAAATATTTTTAGTTCCAAGTCTAGTAGCATGGAATTTAAATAGAAAATACTTTCTCCCGCCTTCTAAGCGGAAAATGAGGAATTTGCGCCAAGGTTACCTTATCGACTTACAGAACATTRTGGTTTTCCTTCTTTGTTAAAACCAAAAAAAGAAAAATCACAAATGTCACCTGATTTGATTTTCCAAGTTGTTTTTCTGAACATTTCTAAATCAATTTTACGCATAACATCGAAAAATCAGTGTTTAGGGCAGTCTTGATTTTGAGCTCTCAGAAACGGATAAGCGTTTTTTTTTCCTAAAAAAGCTAATCAACAATTTTCTATCGGTGAGCTCACAAAAGTTGACGATTTCGAAAAATTCGATTAAAAATTTTATTTACCATGTTCAAGGATTTTTCAAGCTCAGATCAATAAATGAAACGCATAAATCTTCTTAGAATATTTTTATTAGATAGGACTTCGAACCTAAGTTTCGAATATTAGGGAAAAAAATTTGAGCTCAAATTTCAAATGGACCACCTATGTCAAAACTGAAAATCTAGAAAATTATTATTTCAAAATTTGAAAAGAAGTCAAAGAAAAATACATCTTTTAATTGGCTTAAAGTCTTAAAAACCTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTAGCATGGAATTTAAATAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTGAGAGCTCAAAATCAAGACT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGTAGCATGGAATTTAAATAGAAAATACTTTCTCCCGCCTTCTAAGCGGAAAATGAGGAATTTGCGCCAAGGTTACCTTATCGACTTACAGAACATTATGGTTTTCCTTCTTTGTTAAAACCAAAAAAAGAAAAATCACAAATGTCACCTGATTTGATTTTCCAAGTTGTTTTTCTGAACATTTCTAAATCAATTTTACGCATAACATCGAAAAATCAGTGTTTAGGGCAGTCTTGATTTTGAGCTCTCAG</canonical_amplicon>
		<polymorphic_amplicon>AGTAGCATGGAATTTAAATAGAAAATACTTTCTCCCGCCTTCTAAGCGGAAAATGAGGAATTTGCGCCAAGGTTACCTTATCGACTTACAGAACATTRTGGTTTTCCTTCTTTGTTAAAACCAAAAAAAGAAAAATCACAAATGTCACCTGATTTGATTTTCCAAGTTGTTTTTCTGAACATTTCTAAATCAATTTTACGCATAACATCGAAAAATCAGTGTTTAGGGCAGTCTTGATTTTGAGCTCTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37210</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>14950</contig_pos>
        <strand></strand>
        <context>AAAACTTGCT[G/A]TTTTAAAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACTTGAAAAACATAAATATCTAGAGAAGAGATACTCTTTTAAAACTTGCT</left_flank>
        <right_flank>TTTTAAAATTAACTTATTATTCTGAATTTTTTAGCTTTCTTGTTTTTTCT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATTTCCATTTCGTCAATATTTTGTTTTCTAAATTCCAATATTTTTGTTAGTTGAAAAAAATCACTGCTTCAAGCAGGAGCAACAATCGATGCCACAAAAATAATATGTGCGCGATAAAATTTGAAAATACGAAGGAATTACTGTTTCAAAAATTTACTGTTTCAAAATAAAAATAACGCTAAAACCGCTTAAAGATTTTTGATCATTCGAGAAAATTTATCATAAAAAGCGGAGCTGAGAAAAATACCAAAGGTTGCCGCCTACGGTAGTCAAAAATGTTGGTGATTTTTTTACCGCTAAAATTTTTTTCTCAAATTTTTACTGTTTTTCGTCTCAAGAACAAGAAATTAATTTTTTCAAAATTTCCAATACTGAAATTCTATTTGAAAATTACCAGTTTCTATAAATTATATAAATTCGAATATATCAAAAAGTAAAAAGTTGAGAACTTGAAAAACATAAATATCTAGAGAAGAGATACTCTTTTAAAACTTGCTGTTTTAAAATTAACTTATTATTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAGGTTCTCATTTTTCAAAATTTTACCGTACTATGAAATGCTCATTTTCTGGTCCTAGTAAACCGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTCGAATATTACTAGCTTGGGGTAGATACAACACAGAATGACTTCATAGCTTCCCTTGAATGTATCTTTATGATTCTTGAGAATCAAGAAAAAAGTATAGTAGGACAAGTAGTAACACCTTTCTTAACACTCGAGATACTCTCGGAAGTAGATCAAAAACAACAAGAAGTGGTAGGAGAGAACATCTAGTTTCTCCAAAGAGATTTCTAGAGAAAGCAAACAGTTTGTAATGAAGAACAGTTGCAAAGAAGTTAGTAAAAAAAGTTACTTGACCTTCTTGTCAATTCATTTCCTCTCTTATAA</canonical>
            <polymorphic>CGATTTCCATTTCGTCAATATTTTGTTTTCTAAATTCCAATATTTTTGTTAGTTGAAAAAAATCACTGCTTCAAGCAGGAGCAACAATCGATGCCACAAAAATAATATGTGCGCGATAAAATTTGAAAATACGAAGGAATTACTGTTTCAAAAATTTACTGTTTCAAAATAAAAATAACGCTAAAACCGCTTAAAGATTTTTGATCATTCGAGAAAATTTATCATAAAAAGCGGAGCTGAGAAAAATACCAAAGGTTGCCGCCTACGGTAGTCAAAAATGTTGGTGATTTTTTTACCGCTAAAATTTTTTTCTCAAATTTTTACTGTTTTTCGTCTCAAGAACAAGAAATTAATTTTTTCAAAATTTCCAATACTGAAATTCTATTTGAAAATTACCAGTTTCTATAAATTATATAAATTCGAATATATCAAAAAGTAAAAAGTTGAGAACTTGAAAAACATAAATATCTAGAGAAGAGATACTCTTTTAAAACTTGCTRTTTTAAAATTAACTTATTATTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAGGTTCTCATTTTTCAAAATTTTACCGTACTATGAAATGCTCATTTTCTGGTCCTAGTAAACCGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTCGAATATTACTAGCTTGGGGTAGATACAACACAGAATGACTTCATAGCTTCCCTTGAATGTATCTTTATGATTCTTGAGAATCAAGAAAAAAGTATAGTAGGACAAGTAGTAACACCTTTCTTAACACTCGAGATACTCTCGGAAGTAGATCAAAAACAACAAGAAGTGGTAGGAGAGAACATCTAGTTTCTCCAAAGAGATTTCTAGAGAAAGCAAACAGTTTGTAATGAAGAACAGTTGCAAAGAAGTTAGTAAAAAAAGTTACTTGACCTTCTTGTCAATTCATTTCCTCTCTTATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGTTGAGAACTTGAAAAACA</pcr_primer_p1>
		<pcr_primer_p2>GAAAAGAGTGAAAAGTTAGGTGA</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>AAAAGTTGAGAACTTGAAAAACATAAATATCTAGAGAAGAGATACTCTTTTAAAACTTGCTGTTTTAAAATTAACTTATTATTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAGGTTCTCATTTTTCAAAATTTTACCGTACTATGAAATGCTCATTTTCTGGTCCTAGTAAACCGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAGTTGAGAACTTGAAAAACATAAATATCTAGAGAAGAGATACTCTTTTAAAACTTGCTRTTTTAAAATTAACTTATTATTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAGGTTCTCATTTTTCAAAATTTTACCGTACTATGAAATGCTCATTTTCTGGTCCTAGTAAACCGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37211</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>14969</contig_pos>
        <strand></strand>
        <context>TTAACTTATT[A/G]TTCTGAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAGAGAAGAGATACTCTTTTAAAACTTGCTGTTTTAAAATTAACTTATT</left_flank>
        <right_flank>TTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAGGTTCTCATTTTTCAAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTGTTTTCTAAATTCCAATATTTTTGTTAGTTGAAAAAAATCACTGCTTCAAGCAGGAGCAACAATCGATGCCACAAAAATAATATGTGCGCGATAAAATTTGAAAATACGAAGGAATTACTGTTTCAAAAATTTACTGTTTCAAAATAAAAATAACGCTAAAACCGCTTAAAGATTTTTGATCATTCGAGAAAATTTATCATAAAAAGCGGAGCTGAGAAAAATACCAAAGGTTGCCGCCTACGGTAGTCAAAAATGTTGGTGATTTTTTTACCGCTAAAATTTTTTTCTCAAATTTTTACTGTTTTTCGTCTCAAGAACAAGAAATTAATTTTTTCAAAATTTCCAATACTGAAATTCTATTTGAAAATTACCAGTTTCTATAAATTATATAAATTCGAATATATCAAAAAGTAAAAAGTTGAGAACTTGAAAAACATAAATATCTAGAGAAGAGATACTCTTTTAAAACTTGCTGTTTTAAAATTAACTTATTATTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAGGTTCTCATTTTTCAAAATTTTACCGTACTATGAAATGCTCATTTTCTGGTCCTAGTAAACCGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTCGAATATTACTAGCTTGGGGTAGATACAACACAGAATGACTTCATAGCTTCCCTTGAATGTATCTTTATGATTCTTGAGAATCAAGAAAAAAGTATAGTAGGACAAGTAGTAACACCTTTCTTAACACTCGAGATACTCTCGGAAGTAGATCAAAAACAACAAGAAGTGGTAGGAGAGAACATCTAGTTTCTCCAAAGAGATTTCTAGAGAAAGCAAACAGTTTGTAATGAAGAACAGTTGCAAAGAAGTTAGTAAAAAAAGTTACTTGACCTTCTTGTCAATTCATTTCCTCTCTTATAATAAAACTTCTTGAGAATTT</canonical>
            <polymorphic>ATTTTGTTTTCTAAATTCCAATATTTTTGTTAGTTGAAAAAAATCACTGCTTCAAGCAGGAGCAACAATCGATGCCACAAAAATAATATGTGCGCGATAAAATTTGAAAATACGAAGGAATTACTGTTTCAAAAATTTACTGTTTCAAAATAAAAATAACGCTAAAACCGCTTAAAGATTTTTGATCATTCGAGAAAATTTATCATAAAAAGCGGAGCTGAGAAAAATACCAAAGGTTGCCGCCTACGGTAGTCAAAAATGTTGGTGATTTTTTTACCGCTAAAATTTTTTTCTCAAATTTTTACTGTTTTTCGTCTCAAGAACAAGAAATTAATTTTTTCAAAATTTCCAATACTGAAATTCTATTTGAAAATTACCAGTTTCTATAAATTATATAAATTCGAATATATCAAAAAGTAAAAAGTTGAGAACTTGAAAAACATAAATATCTAGAGAAGAGATACTCTTTTAAAACTTGCTGTTTTAAAATTAACTTATTRTTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAGGTTCTCATTTTTCAAAATTTTACCGTACTATGAAATGCTCATTTTCTGGTCCTAGTAAACCGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTCGAATATTACTAGCTTGGGGTAGATACAACACAGAATGACTTCATAGCTTCCCTTGAATGTATCTTTATGATTCTTGAGAATCAAGAAAAAAGTATAGTAGGACAAGTAGTAACACCTTTCTTAACACTCGAGATACTCTCGGAAGTAGATCAAAAACAACAAGAAGTGGTAGGAGAGAACATCTAGTTTCTCCAAAGAGATTTCTAGAGAAAGCAAACAGTTTGTAATGAAGAACAGTTGCAAAGAAGTTAGTAAAAAAAGTTACTTGACCTTCTTGTCAATTCATTTCCTCTCTTATAATAAAACTTCTTGAGAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGTTGAGAACTTGAAAAACA</pcr_primer_p1>
		<pcr_primer_p2>GAAAAGAGTGAAAAGTTAGGTGA</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>AAAAGTTGAGAACTTGAAAAACATAAATATCTAGAGAAGAGATACTCTTTTAAAACTTGCTGTTTTAAAATTAACTTATTATTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAGGTTCTCATTTTTCAAAATTTTACCGTACTATGAAATGCTCATTTTCTGGTCCTAGTAAACCGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAGTTGAGAACTTGAAAAACATAAATATCTAGAGAAGAGATACTCTTTTAAAACTTGCTGTTTTAAAATTAACTTATTRTTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAGGTTCTCATTTTTCAAAATTTTACCGTACTATGAAATGCTCATTTTCTGGTCCTAGTAAACCGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37212</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>15003</contig_pos>
        <strand></strand>
        <context>TTTTTTCTAG[G/A]TTCTCATTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTAAAATTAACTTATTATTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAG</left_flank>
        <right_flank>TTCTCATTTTTCAAAATTTTACCGTACTATGAAATGCTCATTTTCTGGTC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAAAAATCACTGCTTCAAGCAGGAGCAACAATCGATGCCACAAAAATAATATGTGCGCGATAAAATTTGAAAATACGAAGGAATTACTGTTTCAAAAATTTACTGTTTCAAAATAAAAATAACGCTAAAACCGCTTAAAGATTTTTGATCATTCGAGAAAATTTATCATAAAAAGCGGAGCTGAGAAAAATACCAAAGGTTGCCGCCTACGGTAGTCAAAAATGTTGGTGATTTTTTTACCGCTAAAATTTTTTTCTCAAATTTTTACTGTTTTTCGTCTCAAGAACAAGAAATTAATTTTTTCAAAATTTCCAATACTGAAATTCTATTTGAAAATTACCAGTTTCTATAAATTATATAAATTCGAATATATCAAAAAGTAAAAAGTTGAGAACTTGAAAAACATAAATATCTAGAGAAGAGATACTCTTTTAAAACTTGCTGTTTTAAAATTAACTTATTATTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAGGTTCTCATTTTTCAAAATTTTACCGTACTATGAAATGCTCATTTTCTGGTCCTAGTAAACCGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTCGAATATTACTAGCTTGGGGTAGATACAACACAGAATGACTTCATAGCTTCCCTTGAATGTATCTTTATGATTCTTGAGAATCAAGAAAAAAGTATAGTAGGACAAGTAGTAACACCTTTCTTAACACTCGAGATACTCTCGGAAGTAGATCAAAAACAACAAGAAGTGGTAGGAGAGAACATCTAGTTTCTCCAAAGAGATTTCTAGAGAAAGCAAACAGTTTGTAATGAAGAACAGTTGCAAAGAAGTTAGTAAAAAAAGTTACTTGACCTTCTTGTCAATTCATTTCCTCTCTTATAATAAAACTTCTTGAGAATTTTCCGCGCGGAAAAATCGGATACATAGGGAAAAAA</canonical>
            <polymorphic>TGAAAAAAATCACTGCTTCAAGCAGGAGCAACAATCGATGCCACAAAAATAATATGTGCGCGATAAAATTTGAAAATACGAAGGAATTACTGTTTCAAAAATTTACTGTTTCAAAATAAAAATAACGCTAAAACCGCTTAAAGATTTTTGATCATTCGAGAAAATTTATCATAAAAAGCGGAGCTGAGAAAAATACCAAAGGTTGCCGCCTACGGTAGTCAAAAATGTTGGTGATTTTTTTACCGCTAAAATTTTTTTCTCAAATTTTTACTGTTTTTCGTCTCAAGAACAAGAAATTAATTTTTTCAAAATTTCCAATACTGAAATTCTATTTGAAAATTACCAGTTTCTATAAATTATATAAATTCGAATATATCAAAAAGTAAAAAGTTGAGAACTTGAAAAACATAAATATCTAGAGAAGAGATACTCTTTTAAAACTTGCTGTTTTAAAATTAACTTATTATTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAGRTTCTCATTTTTCAAAATTTTACCGTACTATGAAATGCTCATTTTCTGGTCCTAGTAAACCGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTCGAATATTACTAGCTTGGGGTAGATACAACACAGAATGACTTCATAGCTTCCCTTGAATGTATCTTTATGATTCTTGAGAATCAAGAAAAAAGTATAGTAGGACAAGTAGTAACACCTTTCTTAACACTCGAGATACTCTCGGAAGTAGATCAAAAACAACAAGAAGTGGTAGGAGAGAACATCTAGTTTCTCCAAAGAGATTTCTAGAGAAAGCAAACAGTTTGTAATGAAGAACAGTTGCAAAGAAGTTAGTAAAAAAAGTTACTTGACCTTCTTGTCAATTCATTTCCTCTCTTATAATAAAACTTCTTGAGAATTTTCCGCGCGGAAAAATCGGATACATAGGGAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGTTGAGAACTTGAAAAACA</pcr_primer_p1>
		<pcr_primer_p2>GAAAAGAGTGAAAAGTTAGGTGA</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>AAAAGTTGAGAACTTGAAAAACATAAATATCTAGAGAAGAGATACTCTTTTAAAACTTGCTGTTTTAAAATTAACTTATTATTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAGGTTCTCATTTTTCAAAATTTTACCGTACTATGAAATGCTCATTTTCTGGTCCTAGTAAACCGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAGTTGAGAACTTGAAAAACATAAATATCTAGAGAAGAGATACTCTTTTAAAACTTGCTGTTTTAAAATTAACTTATTATTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAGRTTCTCATTTTTCAAAATTTTACCGTACTATGAAATGCTCATTTTCTGGTCCTAGTAAACCGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37213</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>15015</contig_pos>
        <strand></strand>
        <context>TCTCATTTTT[C/T]AAAATTTTAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTATTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAGGTTCTCATTTTT</left_flank>
        <right_flank>AAAATTTTACCGTACTATGAAATGCTCATTTTCTGGTCCTAGTAAACCGA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGCTTCAAGCAGGAGCAACAATCGATGCCACAAAAATAATATGTGCGCGATAAAATTTGAAAATACGAAGGAATTACTGTTTCAAAAATTTACTGTTTCAAAATAAAAATAACGCTAAAACCGCTTAAAGATTTTTGATCATTCGAGAAAATTTATCATAAAAAGCGGAGCTGAGAAAAATACCAAAGGTTGCCGCCTACGGTAGTCAAAAATGTTGGTGATTTTTTTACCGCTAAAATTTTTTTCTCAAATTTTTACTGTTTTTCGTCTCAAGAACAAGAAATTAATTTTTTCAAAATTTCCAATACTGAAATTCTATTTGAAAATTACCAGTTTCTATAAATTATATAAATTCGAATATATCAAAAAGTAAAAAGTTGAGAACTTGAAAAACATAAATATCTAGAGAAGAGATACTCTTTTAAAACTTGCTGTTTTAAAATTAACTTATTATTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAGGTTCTCATTTTTCAAAATTTTACCGTACTATGAAATGCTCATTTTCTGGTCCTAGTAAACCGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTCGAATATTACTAGCTTGGGGTAGATACAACACAGAATGACTTCATAGCTTCCCTTGAATGTATCTTTATGATTCTTGAGAATCAAGAAAAAAGTATAGTAGGACAAGTAGTAACACCTTTCTTAACACTCGAGATACTCTCGGAAGTAGATCAAAAACAACAAGAAGTGGTAGGAGAGAACATCTAGTTTCTCCAAAGAGATTTCTAGAGAAAGCAAACAGTTTGTAATGAAGAACAGTTGCAAAGAAGTTAGTAAAAAAAGTTACTTGACCTTCTTGTCAATTCATTTCCTCTCTTATAATAAAACTTCTTGAGAATTTTCCGCGCGGAAAAATCGGATACATAGGGAAAAAAAGCGTGGCAAGA</canonical>
            <polymorphic>CTGCTTCAAGCAGGAGCAACAATCGATGCCACAAAAATAATATGTGCGCGATAAAATTTGAAAATACGAAGGAATTACTGTTTCAAAAATTTACTGTTTCAAAATAAAAATAACGCTAAAACCGCTTAAAGATTTTTGATCATTCGAGAAAATTTATCATAAAAAGCGGAGCTGAGAAAAATACCAAAGGTTGCCGCCTACGGTAGTCAAAAATGTTGGTGATTTTTTTACCGCTAAAATTTTTTTCTCAAATTTTTACTGTTTTTCGTCTCAAGAACAAGAAATTAATTTTTTCAAAATTTCCAATACTGAAATTCTATTTGAAAATTACCAGTTTCTATAAATTATATAAATTCGAATATATCAAAAAGTAAAAAGTTGAGAACTTGAAAAACATAAATATCTAGAGAAGAGATACTCTTTTAAAACTTGCTGTTTTAAAATTAACTTATTATTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAGGTTCTCATTTTTYAAAATTTTACCGTACTATGAAATGCTCATTTTCTGGTCCTAGTAAACCGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTCGAATATTACTAGCTTGGGGTAGATACAACACAGAATGACTTCATAGCTTCCCTTGAATGTATCTTTATGATTCTTGAGAATCAAGAAAAAAGTATAGTAGGACAAGTAGTAACACCTTTCTTAACACTCGAGATACTCTCGGAAGTAGATCAAAAACAACAAGAAGTGGTAGGAGAGAACATCTAGTTTCTCCAAAGAGATTTCTAGAGAAAGCAAACAGTTTGTAATGAAGAACAGTTGCAAAGAAGTTAGTAAAAAAAGTTACTTGACCTTCTTGTCAATTCATTTCCTCTCTTATAATAAAACTTCTTGAGAATTTTCCGCGCGGAAAAATCGGATACATAGGGAAAAAAAGCGTGGCAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGTTGAGAACTTGAAAAACA</pcr_primer_p1>
		<pcr_primer_p2>GAAAAGAGTGAAAAGTTAGGTGA</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>AAAAGTTGAGAACTTGAAAAACATAAATATCTAGAGAAGAGATACTCTTTTAAAACTTGCTGTTTTAAAATTAACTTATTATTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAGGTTCTCATTTTTCAAAATTTTACCGTACTATGAAATGCTCATTTTCTGGTCCTAGTAAACCGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAGTTGAGAACTTGAAAAACATAAATATCTAGAGAAGAGATACTCTTTTAAAACTTGCTGTTTTAAAATTAACTTATTATTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAGGTTCTCATTTTTYAAAATTTTACCGTACTATGAAATGCTCATTTTCTGGTCCTAGTAAACCGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37214</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>15032</contig_pos>
        <strand></strand>
        <context>TTACCGTACT[A/C]TGAAATGCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAGCTTTCTTGTTTTTTCTAGGTTCTCATTTTTCAAAATTTTACCGTACT</left_flank>
        <right_flank>TGAAATGCTCATTTTCTGGTCCTAGTAAACCGATCAAAATTGAAATTCGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAATCGATGCCACAAAAATAATATGTGCGCGATAAAATTTGAAAATACGAAGGAATTACTGTTTCAAAAATTTACTGTTTCAAAATAAAAATAACGCTAAAACCGCTTAAAGATTTTTGATCATTCGAGAAAATTTATCATAAAAAGCGGAGCTGAGAAAAATACCAAAGGTTGCCGCCTACGGTAGTCAAAAATGTTGGTGATTTTTTTACCGCTAAAATTTTTTTCTCAAATTTTTACTGTTTTTCGTCTCAAGAACAAGAAATTAATTTTTTCAAAATTTCCAATACTGAAATTCTATTTGAAAATTACCAGTTTCTATAAATTATATAAATTCGAATATATCAAAAAGTAAAAAGTTGAGAACTTGAAAAACATAAATATCTAGAGAAGAGATACTCTTTTAAAACTTGCTGTTTTAAAATTAACTTATTATTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAGGTTCTCATTTTTCAAAATTTTACCGTACTATGAAATGCTCATTTTCTGGTCCTAGTAAACCGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTCGAATATTACTAGCTTGGGGTAGATACAACACAGAATGACTTCATAGCTTCCCTTGAATGTATCTTTATGATTCTTGAGAATCAAGAAAAAAGTATAGTAGGACAAGTAGTAACACCTTTCTTAACACTCGAGATACTCTCGGAAGTAGATCAAAAACAACAAGAAGTGGTAGGAGAGAACATCTAGTTTCTCCAAAGAGATTTCTAGAGAAAGCAAACAGTTTGTAATGAAGAACAGTTGCAAAGAAGTTAGTAAAAAAAGTTACTTGACCTTCTTGTCAATTCATTTCCTCTCTTATAATAAAACTTCTTGAGAATTTTCCGCGCGGAAAAATCGGATACATAGGGAAAAAAAGCGTGGCAAGAGAGGGGGAAAAGCGTGA</canonical>
            <polymorphic>AACAATCGATGCCACAAAAATAATATGTGCGCGATAAAATTTGAAAATACGAAGGAATTACTGTTTCAAAAATTTACTGTTTCAAAATAAAAATAACGCTAAAACCGCTTAAAGATTTTTGATCATTCGAGAAAATTTATCATAAAAAGCGGAGCTGAGAAAAATACCAAAGGTTGCCGCCTACGGTAGTCAAAAATGTTGGTGATTTTTTTACCGCTAAAATTTTTTTCTCAAATTTTTACTGTTTTTCGTCTCAAGAACAAGAAATTAATTTTTTCAAAATTTCCAATACTGAAATTCTATTTGAAAATTACCAGTTTCTATAAATTATATAAATTCGAATATATCAAAAAGTAAAAAGTTGAGAACTTGAAAAACATAAATATCTAGAGAAGAGATACTCTTTTAAAACTTGCTGTTTTAAAATTAACTTATTATTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAGGTTCTCATTTTTCAAAATTTTACCGTACTMTGAAATGCTCATTTTCTGGTCCTAGTAAACCGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTCGAATATTACTAGCTTGGGGTAGATACAACACAGAATGACTTCATAGCTTCCCTTGAATGTATCTTTATGATTCTTGAGAATCAAGAAAAAAGTATAGTAGGACAAGTAGTAACACCTTTCTTAACACTCGAGATACTCTCGGAAGTAGATCAAAAACAACAAGAAGTGGTAGGAGAGAACATCTAGTTTCTCCAAAGAGATTTCTAGAGAAAGCAAACAGTTTGTAATGAAGAACAGTTGCAAAGAAGTTAGTAAAAAAAGTTACTTGACCTTCTTGTCAATTCATTTCCTCTCTTATAATAAAACTTCTTGAGAATTTTCCGCGCGGAAAAATCGGATACATAGGGAAAAAAAGCGTGGCAAGAGAGGGGGAAAAGCGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGTTGAGAACTTGAAAAACA</pcr_primer_p1>
		<pcr_primer_p2>GAAAAGAGTGAAAAGTTAGGTGA</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>AAAAGTTGAGAACTTGAAAAACATAAATATCTAGAGAAGAGATACTCTTTTAAAACTTGCTGTTTTAAAATTAACTTATTATTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAGGTTCTCATTTTTCAAAATTTTACCGTACTATGAAATGCTCATTTTCTGGTCCTAGTAAACCGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAGTTGAGAACTTGAAAAACATAAATATCTAGAGAAGAGATACTCTTTTAAAACTTGCTGTTTTAAAATTAACTTATTATTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAGGTTCTCATTTTTCAAAATTTTACCGTACTMTGAAATGCTCATTTTCTGGTCCTAGTAAACCGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37215</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>15063</contig_pos>
        <strand></strand>
        <context>CCTAGTAAAC[C/T]GATCAAAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAAAATTTTACCGTACTATGAAATGCTCATTTTCTGGTCCTAGTAAAC</left_flank>
        <right_flank>GATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATAAAATTTGAAAATACGAAGGAATTACTGTTTCAAAAATTTACTGTTTCAAAATAAAAATAACGCTAAAACCGCTTAAAGATTTTTGATCATTCGAGAAAATTTATCATAAAAAGCGGAGCTGAGAAAAATACCAAAGGTTGCCGCCTACGGTAGTCAAAAATGTTGGTGATTTTTTTACCGCTAAAATTTTTTTCTCAAATTTTTACTGTTTTTCGTCTCAAGAACAAGAAATTAATTTTTTCAAAATTTCCAATACTGAAATTCTATTTGAAAATTACCAGTTTCTATAAATTATATAAATTCGAATATATCAAAAAGTAAAAAGTTGAGAACTTGAAAAACATAAATATCTAGAGAAGAGATACTCTTTTAAAACTTGCTGTTTTAAAATTAACTTATTATTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAGGTTCTCATTTTTCAAAATTTTACCGTACTATGAAATGCTCATTTTCTGGTCCTAGTAAACCGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTCGAATATTACTAGCTTGGGGTAGATACAACACAGAATGACTTCATAGCTTCCCTTGAATGTATCTTTATGATTCTTGAGAATCAAGAAAAAAGTATAGTAGGACAAGTAGTAACACCTTTCTTAACACTCGAGATACTCTCGGAAGTAGATCAAAAACAACAAGAAGTGGTAGGAGAGAACATCTAGTTTCTCCAAAGAGATTTCTAGAGAAAGCAAACAGTTTGTAATGAAGAACAGTTGCAAAGAAGTTAGTAAAAAAAGTTACTTGACCTTCTTGTCAATTCATTTCCTCTCTTATAATAAAACTTCTTGAGAATTTTCCGCGCGGAAAAATCGGATACATAGGGAAAAAAAGCGTGGCAAGAGAGGGGGAAAAGCGTGAAGTGGCACATAGGTACACACATGAAAAAATG</canonical>
            <polymorphic>CGATAAAATTTGAAAATACGAAGGAATTACTGTTTCAAAAATTTACTGTTTCAAAATAAAAATAACGCTAAAACCGCTTAAAGATTTTTGATCATTCGAGAAAATTTATCATAAAAAGCGGAGCTGAGAAAAATACCAAAGGTTGCCGCCTACGGTAGTCAAAAATGTTGGTGATTTTTTTACCGCTAAAATTTTTTTCTCAAATTTTTACTGTTTTTCGTCTCAAGAACAAGAAATTAATTTTTTCAAAATTTCCAATACTGAAATTCTATTTGAAAATTACCAGTTTCTATAAATTATATAAATTCGAATATATCAAAAAGTAAAAAGTTGAGAACTTGAAAAACATAAATATCTAGAGAAGAGATACTCTTTTAAAACTTGCTGTTTTAAAATTAACTTATTATTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAGGTTCTCATTTTTCAAAATTTTACCGTACTATGAAATGCTCATTTTCTGGTCCTAGTAAACYGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTCGAATATTACTAGCTTGGGGTAGATACAACACAGAATGACTTCATAGCTTCCCTTGAATGTATCTTTATGATTCTTGAGAATCAAGAAAAAAGTATAGTAGGACAAGTAGTAACACCTTTCTTAACACTCGAGATACTCTCGGAAGTAGATCAAAAACAACAAGAAGTGGTAGGAGAGAACATCTAGTTTCTCCAAAGAGATTTCTAGAGAAAGCAAACAGTTTGTAATGAAGAACAGTTGCAAAGAAGTTAGTAAAAAAAGTTACTTGACCTTCTTGTCAATTCATTTCCTCTCTTATAATAAAACTTCTTGAGAATTTTCCGCGCGGAAAAATCGGATACATAGGGAAAAAAAGCGTGGCAAGAGAGGGGGAAAAGCGTGAAGTGGCACATAGGTACACACATGAAAAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGTTGAGAACTTGAAAAACA</pcr_primer_p1>
		<pcr_primer_p2>GAAAAGAGTGAAAAGTTAGGTGA</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>AAAAGTTGAGAACTTGAAAAACATAAATATCTAGAGAAGAGATACTCTTTTAAAACTTGCTGTTTTAAAATTAACTTATTATTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAGGTTCTCATTTTTCAAAATTTTACCGTACTATGAAATGCTCATTTTCTGGTCCTAGTAAACCGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAGTTGAGAACTTGAAAAACATAAATATCTAGAGAAGAGATACTCTTTTAAAACTTGCTGTTTTAAAATTAACTTATTATTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAGGTTCTCATTTTTCAAAATTTTACCGTACTATGAAATGCTCATTTTCTGGTCCTAGTAAACYGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37216</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>15113</contig_pos>
        <strand></strand>
        <context>TAAAAATTGC[G/T]GTTTCAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGC</left_flank>
        <right_flank>GTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTCGAATATTACTAGC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAATAAAAATAACGCTAAAACCGCTTAAAGATTTTTGATCATTCGAGAAAATTTATCATAAAAAGCGGAGCTGAGAAAAATACCAAAGGTTGCCGCCTACGGTAGTCAAAAATGTTGGTGATTTTTTTACCGCTAAAATTTTTTTCTCAAATTTTTACTGTTTTTCGTCTCAAGAACAAGAAATTAATTTTTTCAAAATTTCCAATACTGAAATTCTATTTGAAAATTACCAGTTTCTATAAATTATATAAATTCGAATATATCAAAAAGTAAAAAGTTGAGAACTTGAAAAACATAAATATCTAGAGAAGAGATACTCTTTTAAAACTTGCTGTTTTAAAATTAACTTATTATTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAGGTTCTCATTTTTCAAAATTTTACCGTACTATGAAATGCTCATTTTCTGGTCCTAGTAAACCGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTCGAATATTACTAGCTTGGGGTAGATACAACACAGAATGACTTCATAGCTTCCCTTGAATGTATCTTTATGATTCTTGAGAATCAAGAAAAAAGTATAGTAGGACAAGTAGTAACACCTTTCTTAACACTCGAGATACTCTCGGAAGTAGATCAAAAACAACAAGAAGTGGTAGGAGAGAACATCTAGTTTCTCCAAAGAGATTTCTAGAGAAAGCAAACAGTTTGTAATGAAGAACAGTTGCAAAGAAGTTAGTAAAAAAAGTTACTTGACCTTCTTGTCAATTCATTTCCTCTCTTATAATAAAACTTCTTGAGAATTTTCCGCGCGGAAAAATCGGATACATAGGGAAAAAAAGCGTGGCAAGAGAGGGGGAAAAGCGTGAAGTGGCACATAGGTACACACATGAAAAAATGGCTGACATGTGAGAGAGAATGAAAAAATGATTTTTTGTATGTGATCGAAG</canonical>
            <polymorphic>TCAAAATAAAAATAACGCTAAAACCGCTTAAAGATTTTTGATCATTCGAGAAAATTTATCATAAAAAGCGGAGCTGAGAAAAATACCAAAGGTTGCCGCCTACGGTAGTCAAAAATGTTGGTGATTTTTTTACCGCTAAAATTTTTTTCTCAAATTTTTACTGTTTTTCGTCTCAAGAACAAGAAATTAATTTTTTCAAAATTTCCAATACTGAAATTCTATTTGAAAATTACCAGTTTCTATAAATTATATAAATTCGAATATATCAAAAAGTAAAAAGTTGAGAACTTGAAAAACATAAATATCTAGAGAAGAGATACTCTTTTAAAACTTGCTGTTTTAAAATTAACTTATTATTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAGGTTCTCATTTTTCAAAATTTTACCGTACTATGAAATGCTCATTTTCTGGTCCTAGTAAACCGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCKGTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTCGAATATTACTAGCTTGGGGTAGATACAACACAGAATGACTTCATAGCTTCCCTTGAATGTATCTTTATGATTCTTGAGAATCAAGAAAAAAGTATAGTAGGACAAGTAGTAACACCTTTCTTAACACTCGAGATACTCTCGGAAGTAGATCAAAAACAACAAGAAGTGGTAGGAGAGAACATCTAGTTTCTCCAAAGAGATTTCTAGAGAAAGCAAACAGTTTGTAATGAAGAACAGTTGCAAAGAAGTTAGTAAAAAAAGTTACTTGACCTTCTTGTCAATTCATTTCCTCTCTTATAATAAAACTTCTTGAGAATTTTCCGCGCGGAAAAATCGGATACATAGGGAAAAAAAGCGTGGCAAGAGAGGGGGAAAAGCGTGAAGTGGCACATAGGTACACACATGAAAAAATGGCTGACATGTGAGAGAGAATGAAAAAATGATTTTTTGTATGTGATCGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAATGCTCATTTTCTGGT</pcr_primer_p1>
		<pcr_primer_p2>CTCGAGTGTTAAGAAAGGTGTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAAATGCTCATTTTCTGGTCCTAGTAAACCGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTCGAATATTACTAGCTTGGGGTAGATACAACACAGAATGACTTCATAGCTTCCCTTGAATGTATCTTTATGATTCTTGAGAATCAAGAAAAAAGTATAGTAGGACAAGTAGTAACACCTTTCTTAACACTCGAG</canonical_amplicon>
		<polymorphic_amplicon>TGAAATGCTCATTTTCTGGTCCTAGTAAACCGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCKGTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTCGAATATTACTAGCTTGGGGTAGATACAACACAGAATGACTTCATAGCTTCCCTTGAATGTATCTTTATGATTCTTGAGAATCAAGAAAAAAGTATAGTAGGACAAGTAGTAACACCTTTCTTAACACTCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37217</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>15126</contig_pos>
        <strand></strand>
        <context>TTCAAAATCT[T/G]CTCACCTAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCT</left_flank>
        <right_flank>CTCACCTAACTTTTCACTCTTTTCGAATATTACTAGCTTGGGGTAGATAC</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGCTAAAACCGCTTAAAGATTTTTGATCATTCGAGAAAATTTATCATAAAAAGCGGAGCTGAGAAAAATACCAAAGGTTGCCGCCTACGGTAGTCAAAAATGTTGGTGATTTTTTTACCGCTAAAATTTTTTTCTCAAATTTTTACTGTTTTTCGTCTCAAGAACAAGAAATTAATTTTTTCAAAATTTCCAATACTGAAATTCTATTTGAAAATTACCAGTTTCTATAAATTATATAAATTCGAATATATCAAAAAGTAAAAAGTTGAGAACTTGAAAAACATAAATATCTAGAGAAGAGATACTCTTTTAAAACTTGCTGTTTTAAAATTAACTTATTATTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAGGTTCTCATTTTTCAAAATTTTACCGTACTATGAAATGCTCATTTTCTGGTCCTAGTAAACCGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTCGAATATTACTAGCTTGGGGTAGATACAACACAGAATGACTTCATAGCTTCCCTTGAATGTATCTTTATGATTCTTGAGAATCAAGAAAAAAGTATAGTAGGACAAGTAGTAACACCTTTCTTAACACTCGAGATACTCTCGGAAGTAGATCAAAAACAACAAGAAGTGGTAGGAGAGAACATCTAGTTTCTCCAAAGAGATTTCTAGAGAAAGCAAACAGTTTGTAATGAAGAACAGTTGCAAAGAAGTTAGTAAAAAAAGTTACTTGACCTTCTTGTCAATTCATTTCCTCTCTTATAATAAAACTTCTTGAGAATTTTCCGCGCGGAAAAATCGGATACATAGGGAAAAAAAGCGTGGCAAGAGAGGGGGAAAAGCGTGAAGTGGCACATAGGTACACACATGAAAAAATGGCTGACATGTGAGAGAGAATGAAAAAATGATTTTTTGTATGTGATCGAAGCAGCTGGTGGTGG</canonical>
            <polymorphic>AACGCTAAAACCGCTTAAAGATTTTTGATCATTCGAGAAAATTTATCATAAAAAGCGGAGCTGAGAAAAATACCAAAGGTTGCCGCCTACGGTAGTCAAAAATGTTGGTGATTTTTTTACCGCTAAAATTTTTTTCTCAAATTTTTACTGTTTTTCGTCTCAAGAACAAGAAATTAATTTTTTCAAAATTTCCAATACTGAAATTCTATTTGAAAATTACCAGTTTCTATAAATTATATAAATTCGAATATATCAAAAAGTAAAAAGTTGAGAACTTGAAAAACATAAATATCTAGAGAAGAGATACTCTTTTAAAACTTGCTGTTTTAAAATTAACTTATTATTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAGGTTCTCATTTTTCAAAATTTTACCGTACTATGAAATGCTCATTTTCTGGTCCTAGTAAACCGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCTKCTCACCTAACTTTTCACTCTTTTCGAATATTACTAGCTTGGGGTAGATACAACACAGAATGACTTCATAGCTTCCCTTGAATGTATCTTTATGATTCTTGAGAATCAAGAAAAAAGTATAGTAGGACAAGTAGTAACACCTTTCTTAACACTCGAGATACTCTCGGAAGTAGATCAAAAACAACAAGAAGTGGTAGGAGAGAACATCTAGTTTCTCCAAAGAGATTTCTAGAGAAAGCAAACAGTTTGTAATGAAGAACAGTTGCAAAGAAGTTAGTAAAAAAAGTTACTTGACCTTCTTGTCAATTCATTTCCTCTCTTATAATAAAACTTCTTGAGAATTTTCCGCGCGGAAAAATCGGATACATAGGGAAAAAAAGCGTGGCAAGAGAGGGGGAAAAGCGTGAAGTGGCACATAGGTACACACATGAAAAAATGGCTGACATGTGAGAGAGAATGAAAAAATGATTTTTTGTATGTGATCGAAGCAGCTGGTGGTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTGAAATTCGAAACTCTC</pcr_primer_p1>
		<pcr_primer_p2>CACTTCTTGTTGTTTTTGATCTAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTCGAATATTACTAGCTTGGGGTAGATACAACACAGAATGACTTCATAGCTTCCCTTGAATGTATCTTTATGATTCTTGAGAATCAAGAAAAAAGTATAGTAGGACAAGTAGTAACACCTTTCTTAACACTCGAGATACTCTCGGAAGTAGATCAAAAACAACAAGAAGTG</canonical_amplicon>
		<polymorphic_amplicon>AAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCTKCTCACCTAACTTTTCACTCTTTTCGAATATTACTAGCTTGGGGTAGATACAACACAGAATGACTTCATAGCTTCCCTTGAATGTATCTTTATGATTCTTGAGAATCAAGAAAAAAGTATAGTAGGACAAGTAGTAACACCTTTCTTAACACTCGAGATACTCTCGGAAGTAGATCAAAAACAACAAGAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37218</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>15236</contig_pos>
        <strand></strand>
        <context>GAGAATCAAG[A/T]AAAAAGTATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGACTTCATAGCTTCCCTTGAATGTATCTTTATGATTCTTGAGAATCAAG</left_flank>
        <right_flank>AAAAAGTATAGTAGGACAAGTAGTAACACCTTTCTTAACACTCGAGATAC</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTTTACCGCTAAAATTTTTTTCTCAAATTTTTACTGTTTTTCGTCTCAAGAACAAGAAATTAATTTTTTCAAAATTTCCAATACTGAAATTCTATTTGAAAATTACCAGTTTCTATAAATTATATAAATTCGAATATATCAAAAAGTAAAAAGTTGAGAACTTGAAAAACATAAATATCTAGAGAAGAGATACTCTTTTAAAACTTGCTGTTTTAAAATTAACTTATTATTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAGGTTCTCATTTTTCAAAATTTTACCGTACTATGAAATGCTCATTTTCTGGTCCTAGTAAACCGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTCGAATATTACTAGCTTGGGGTAGATACAACACAGAATGACTTCATAGCTTCCCTTGAATGTATCTTTATGATTCTTGAGAATCAAGAAAAAAGTATAGTAGGACAAGTAGTAACACCTTTCTTAACACTCGAGATACTCTCGGAAGTAGATCAAAAACAACAAGAAGTGGTAGGAGAGAACATCTAGTTTCTCCAAAGAGATTTCTAGAGAAAGCAAACAGTTTGTAATGAAGAACAGTTGCAAAGAAGTTAGTAAAAAAAGTTACTTGACCTTCTTGTCAATTCATTTCCTCTCTTATAATAAAACTTCTTGAGAATTTTCCGCGCGGAAAAATCGGATACATAGGGAAAAAAAGCGTGGCAAGAGAGGGGGAAAAGCGTGAAGTGGCACATAGGTACACACATGAAAAAATGGCTGACATGTGAGAGAGAATGAAAAAATGATTTTTTGTATGTGATCGAAGCAGCTGGTGGTGGCGCCTGGAGGGATTAGTAAACTATACACAATGTGATCTTACGGTTTGCAGGAAGCTAGACATTCTAGCTTCTCTGGATTTATCAATTTTAATGAGTTCGAATTTGTTAAC</canonical>
            <polymorphic>ATTTTTTTACCGCTAAAATTTTTTTCTCAAATTTTTACTGTTTTTCGTCTCAAGAACAAGAAATTAATTTTTTCAAAATTTCCAATACTGAAATTCTATTTGAAAATTACCAGTTTCTATAAATTATATAAATTCGAATATATCAAAAAGTAAAAAGTTGAGAACTTGAAAAACATAAATATCTAGAGAAGAGATACTCTTTTAAAACTTGCTGTTTTAAAATTAACTTATTATTCTGAATTTTTTAGCTTTCTTGTTTTTTCTAGGTTCTCATTTTTCAAAATTTTACCGTACTATGAAATGCTCATTTTCTGGTCCTAGTAAACCGATCAAAATTGAAATTCGAAACTCTCGAAATCATGCAGATAAAAATTGCGGTTTCAAAATCTTCTCACCTAACTTTTCACTCTTTTCGAATATTACTAGCTTGGGGTAGATACAACACAGAATGACTTCATAGCTTCCCTTGAATGTATCTTTATGATTCTTGAGAATCAAGWAAAAAGTATAGTAGGACAAGTAGTAACACCTTTCTTAACACTCGAGATACTCTCGGAAGTAGATCAAAAACAACAAGAAGTGGTAGGAGAGAACATCTAGTTTCTCCAAAGAGATTTCTAGAGAAAGCAAACAGTTTGTAATGAAGAACAGTTGCAAAGAAGTTAGTAAAAAAAGTTACTTGACCTTCTTGTCAATTCATTTCCTCTCTTATAATAAAACTTCTTGAGAATTTTCCGCGCGGAAAAATCGGATACATAGGGAAAAAAAGCGTGGCAAGAGAGGGGGAAAAGCGTGAAGTGGCACATAGGTACACACATGAAAAAATGGCTGACATGTGAGAGAGAATGAAAAAATGATTTTTTGTATGTGATCGAAGCAGCTGGTGGTGGCGCCTGGAGGGATTAGTAAACTATACACAATGTGATCTTACGGTTTGCAGGAAGCTAGACATTCTAGCTTCTCTGGATTTATCAATTTTAATGAGTTCGAATTTGTTAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>240 168 136 132 105 75 51 47 37 9</canonical_bands>
                <polymorphic_bands>240 168 136 132 105 75 56 51 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACTAGCTTGGGGTAGATACAA</pcr_primer_p1>
		<pcr_primer_p2>CTAACTTCTTTGCAACTGTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTACTAGCTTGGGGTAGATACAACACAGAATGACTTCATAGCTTCCCTTGAATGTATCTTTATGATTCTTGAGAATCAAGAAAAAAGTATAGTAGGACAAGTAGTAACACCTTTCTTAACACTCGAGATACTCTCGGAAGTAGATCAAAAACAACAAGAAGTGGTAGGAGAGAACATCTAGTTTCTCCAAAGAGATTTCTAGAGAAAGCAAACAGTTTGTAATGAAGAACAGTTGCAAAGAAGTTAG</canonical_amplicon>
		<polymorphic_amplicon>TTACTAGCTTGGGGTAGATACAACACAGAATGACTTCATAGCTTCCCTTGAATGTATCTTTATGATTCTTGAGAATCAAGWAAAAAGTATAGTAGGACAAGTAGTAACACCTTTCTTAACACTCGAGATACTCTCGGAAGTAGATCAAAAACAACAAGAAGTGGTAGGAGAGAACATCTAGTTTCTCCAAAGAGATTTCTAGAGAAAGCAAACAGTTTGTAATGAAGAACAGTTGCAAAGAAGTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37219</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>25284</contig_pos>
        <strand>+</strand>
        <context>TTTCGATCGT[G/T]CACACCTCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTGTTTTAAATTTATTGAGCTTTTCTTGAAACAGTTTTTTTTCGATCGT</left_flank>
        <right_flank>CACACCTCGGGTGCGGGACTGTAACTTTTGGTAGGAAGTTGAAGGGGGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAATTAGAAACTCAATTGTAAGGTACAACAAGCGGAAGCCAGGAGGTTGAGCCCCCGACAGGGGGCGTAAACCGACTGGTGGATAACGTTTATAAATTATAACAGTAAATCCGAAAACTGTTTCTTGACTCCTTTTTTCTTTGGTAAAGTTGTATAAGCATGACAATATAATTGATGATTTTTTTCTGTTTCAAAAGTTGAGCTTTTTTGAAACAGTAAAAGTTTTATACTCGGTCGAAAACTTTAAGTTTGAAGCATACAATTATAAGGTGCGTAATCAGTTTGTGGACACCTGGACAAACAGACAGGCGCAAAATTCAAGGTTTTTTTTACGAAATTGAGAGAATTATTTTTTTTTAATTTCCGAATTTCTGGGAACTTTTTTTGTAAAATGGTTTTCCTAATTATTGTGATATGATTATTTTCATAGTACAATTAATTTCTTTTCTGTTTTAAATTTATTGAGCTTTTCTTGAAACAGTTTTTTTTCGATCGTTCACACCTCGGGTGCGGGACTGTAACTTTTGGTAGGAAGTTGAAGGGGGTTCGGCTTCTGGTCGAATCTAAGTCAGCTTCAGGTCGGAAGTTGAGGGACCGTCGGCTTCAGCTCGGAACCTGGTCGACTTCAGGTCAGAAGTTAAACAGCGTTTGGATGTCACTGGCAACTTTTGGTCGGAAGTTGAGAGGGGTTCAGCTTCTGGTCGGATCTTGGTCAGATCTTTGTCAGATCTTGGTCGGCTTTAAGAAGCGTTGCGTATGCGACGCGTGCGTTTCTCATTCTTGTTTATTTTTTCAAAACTGTTTTCTTTTCTGCCTTTTTACCTAAAAACGTTCGTTTTTGAATTTTCGTTGTAATTTACTTTTGAAACAGCACACATTTCATTTCGCTTTTTGTCGGCTTTAGTAGCGGTCTTGTCCATAATCCGACCAAGCAGCGCCCAGAAGCCGACGAAGATCCGACCAGAAGTTGCCGGCGACACCCGAGACATTCGTCAGA</canonical>
            <polymorphic>TTGAAATTAGAAACTCAATTGTAAGGTACAACAAGCGGAAGCCAGGAGGTTGAGCCCCCGACAGGGGGCGTAAACCGACTGGTGGATAACGTTTATAAATTATAACAGTAAATCCGAAAACTGTTTCTTGACTCCTTTTTTCTTTGGTAAAGTTGTATAAGCATGACAATATAATTGATGATTTTTTTCTGTTTCAAAAGTTGAGCTTTTTTGAAACAGTAAAAGTTTTATACTCGGTCGAAAACTTTAAGTTTGAAGCATACAATTATAAGGTGCGTAATCAGTTTGTGGACACCTGGACAAACAGACAGGCGCAAAATTCAAGGTTTTTTTTACGAAATTGAGAGAATTATTTTTTTTTAATTTCCGAATTTCTGGGAACTTTTTTTGTAAAATGGTTTTCCTAATTATTGTGATATGATTATTTTCATAGTACAATTAATTTCTTTTCTGTTTTAAATTTATTGAGCTTTTCTTGAAACAGTTTTTTTTCGATCGTKCACACCTCGGGTGCGGGACTGTAACTTTTGGTAGGAAGTTGAAGGGGGTTCGGCTTCTGGTCGAATCTAAGTCAGCTTCAGGTCGGAAGTTGAGGGACCGTCGGCTTCAGCTCGGAACCTGGTCGACTTCAGGTCAGAAGTTAAACAGCGTTTGGATGTCACTGGCAACTTTTGGTCGGAAGTTGAGAGGGGTTCAGCTTCTGGTCGGATCTTGGTCAGATCTTTGTCAGATCTTGGTCGGCTTTAAGAAGCGTTGCGTATGCGACGCGTGCGTTTCTCATTCTTGTTTATTTTTTCAAAACTGTTTTCTTTTCTGCCTTTTTACCTAAAAACGTTCGTTTTTGAATTTTCGTTGTAATTTACTTTTGAAACAGCACACATTTCATTTCGCTTTTTGTCGGCTTTAGTAGCGGTCTTGTCCATAATCCGACCAAGCAGCGCCCAGAAGCCGACGAAGATCCGACCAGAAGTTGCCGGCGACACCCGAGACATTCGTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGGTTTTCCTAATTATTGTGAT</pcr_primer_p1>
		<pcr_primer_p2>AAAGGCAGAAAAGAAAACAGT</pcr_primer_p2>
		<pcr_amplicon_size>428</pcr_amplicon_size>
		<canonical_amplicon>AATGGTTTTCCTAATTATTGTGATATGATTATTTTCATAGTACAATTAATTTCTTTTCTGTTTTAAATTTATTGAGCTTTTCTTGAAACAGTTTTTTTTCGATCGTTCACACCTCGGGTGCGGGACTGTAACTTTTGGTAGGAAGTTGAAGGGGGTTCGGCTTCTGGTCGAATCTAAGTCAGCTTCAGGTCGGAAGTTGAGGGACCGTCGGCTTCAGCTCGGAACCTGGTCGACTTCAGGTCAGAAGTTAAACAGCGTTTGGATGTCACTGGCAACTTTTGGTCGGAAGTTGAGAGGGGTTCAGCTTCTGGTCGGATCTTGGTCAGATCTTTGTCAGATCTTGGTCGGCTTTAAGAAGCGTTGCGTATGCGACGCGTGCGTTTCTCATTCTTGTTTATTTTTTCAAAACTGTTTTCTTTTCTGCCTTT</canonical_amplicon>
		<polymorphic_amplicon>AATGGTTTTCCTAATTATTGTGATATGATTATTTTCATAGTACAATTAATTTCTTTTCTGTTTTAAATTTATTGAGCTTTTCTTGAAACAGTTTTTTTTCGATCGTKCACACCTCGGGTGCGGGACTGTAACTTTTGGTAGGAAGTTGAAGGGGGTTCGGCTTCTGGTCGAATCTAAGTCAGCTTCAGGTCGGAAGTTGAGGGACCGTCGGCTTCAGCTCGGAACCTGGTCGACTTCAGGTCAGAAGTTAAACAGCGTTTGGATGTCACTGGCAACTTTTGGTCGGAAGTTGAGAGGGGTTCAGCTTCTGGTCGGATCTTGGTCAGATCTTTGTCAGATCTTGGTCGGCTTTAAGAAGCGTTGCGTATGCGACGCGTGCGTTTCTCATTCTTGTTTATTTTTTCAAAACTGTTTTCTTTTCTGCCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37220</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>25348</contig_pos>
        <strand></strand>
        <context>cttctggtcg[A/G]atctaagtca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGGACTGTAACTTTTGGTAGGAAGTTGAAGGGGGTTCGGCTTCTGGTCG</left_flank>
        <right_flank>ATCTAAGTCAGCTTCAGGTCGGAAGTTGAGGGACCGTCGGCTTCAGCTCG</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGGCGTAAACCGACTGGTGGATAACGTTTATAAATTATAACAGTAAATCCGAAAACTGTTTCTTGACTCCTTTTTTCTTTGGTAAAGTTGTATAAGCATGACAATATAATTGATGATTTTTTTCTGTTTCAAAAGTTGAGCTTTTTTGAAACAGTAAAAGTTTTATACTCGGTCGAAAACTTTAAGTTTGAAGCATACAATTATAAGGTGCGTAATCAGTTTGTGGACACCTGGACAAACAGACAGGCGCAAAATTCAAGGTTTTTTTTACGAAATTGAGAGAATTATTTTTTTTTAATTTCCGAATTTCTGGGAACTTTTTTTGTAAAATGGTTTTCCTAATTATTGTGATATGATTATTTTCATAGTACAATTAATTTCTTTTCTGTTTTAAATTTATTGAGCTTTTCTTGAAACAGTTTTTTTTCGATCGTTCACACCTCGGGTGCGGGACTGTAACTTTTGGTAGGAAGTTGAAGGGGGTTCGGCTTCTGGTCGAATCTAAGTCAGCTTCAGGTCGGAAGTTGAGGGACCGTCGGCTTCAGCTCGGAACCTGGTCGACTTCAGGTCAGAAGTTAAACAGCGTTTGGATGTCACTGGCAACTTTTGGTCGGAAGTTGAGAGGGGTTCAGCTTCTGGTCGGATCTTGGTCAGATCTTTGTCAGATCTTGGTCGGCTTTAAGAAGCGTTGCGTATGCGACGCGTGCGTTTCTCATTCTTGTTTATTTTTTCAAAACTGTTTTCTTTTCTGCCTTTTTACCTAAAAACGTTCGTTTTTGAATTTTCGTTGTAATTTACTTTTGAAACAGCACACATTTCATTTCGCTTTTTGTCGGCTTTAGTAGCGGTCTTGTCCATAATCCGACCAAGCAGCGCCCAGAAGCCGACGAAGATCCGACCAGAAGTTGCCGGCGACACCCGAGACATTCGTCAGATTTTTATGGACATTAGGGCTTGTGGGTTTGGACAAATAAACAACTGCAAACTTAAATGTCTCCT</canonical>
            <polymorphic>GGGGCGTAAACCGACTGGTGGATAACGTTTATAAATTATAACAGTAAATCCGAAAACTGTTTCTTGACTCCTTTTTTCTTTGGTAAAGTTGTATAAGCATGACAATATAATTGATGATTTTTTTCTGTTTCAAAAGTTGAGCTTTTTTGAAACAGTAAAAGTTTTATACTCGGTCGAAAACTTTAAGTTTGAAGCATACAATTATAAGGTGCGTAATCAGTTTGTGGACACCTGGACAAACAGACAGGCGCAAAATTCAAGGTTTTTTTTACGAAATTGAGAGAATTATTTTTTTTTAATTTCCGAATTTCTGGGAACTTTTTTTGTAAAATGGTTTTCCTAATTATTGTGATATGATTATTTTCATAGTACAATTAATTTCTTTTCTGTTTTAAATTTATTGAGCTTTTCTTGAAACAGTTTTTTTTCGATCGTTCACACCTCGGGTGCGGGACTGTAACTTTTGGTAGGAAGTTGAAGGGGGTTCGGCTTCTGGTCGRATCTAAGTCAGCTTCAGGTCGGAAGTTGAGGGACCGTCGGCTTCAGCTCGGAACCTGGTCGACTTCAGGTCAGAAGTTAAACAGCGTTTGGATGTCACTGGCAACTTTTGGTCGGAAGTTGAGAGGGGTTCAGCTTCTGGTCGGATCTTGGTCAGATCTTTGTCAGATCTTGGTCGGCTTTAAGAAGCGTTGCGTATGCGACGCGTGCGTTTCTCATTCTTGTTTATTTTTTCAAAACTGTTTTCTTTTCTGCCTTTTTACCTAAAAACGTTCGTTTTTGAATTTTCGTTGTAATTTACTTTTGAAACAGCACACATTTCATTTCGCTTTTTGTCGGCTTTAGTAGCGGTCTTGTCCATAATCCGACCAAGCAGCGCCCAGAAGCCGACGAAGATCCGACCAGAAGTTGCCGGCGACACCCGAGACATTCGTCAGATTTTTATGGACATTAGGGCTTGTGGGTTTGGACAAATAAACAACTGCAAACTTAAATGTCTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>440 254 175 69 62</canonical_bands>
                <polymorphic_bands>440 254 175 131</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>501 433 66</canonical_bands>
                <polymorphic_bands>934 66</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAAATTTATTGAGCTTTTCTTGA</pcr_primer_p1>
		<pcr_primer_p2>AAAGGCAGAAAAGAAAACAGT</pcr_primer_p2>
		<pcr_amplicon_size>366</pcr_amplicon_size>
		<canonical_amplicon>TTAAATTTATTGAGCTTTTCTTGAAACAGTTTTTTTTCGATCGTTCACACCTCGGGTGCGGGACTGTAACTTTTGGTAGGAAGTTGAAGGGGGTTCGGCTTCTGGTCGAATCTAAGTCAGCTTCAGGTCGGAAGTTGAGGGACCGTCGGCTTCAGCTCGGAACCTGGTCGACTTCAGGTCAGAAGTTAAACAGCGTTTGGATGTCACTGGCAACTTTTGGTCGGAAGTTGAGAGGGGTTCAGCTTCTGGTCGGATCTTGGTCAGATCTTTGTCAGATCTTGGTCGGCTTTAAGAAGCGTTGCGTATGCGACGCGTGCGTTTCTCATTCTTGTTTATTTTTTCAAAACTGTTTTCTTTTCTGCCTTT</canonical_amplicon>
		<polymorphic_amplicon>TTAAATTTATTGAGCTTTTCTTGAAACAGTTTTTTTTCGATCGTTCACACCTCGGGTGCGGGACTGTAACTTTTGGTAGGAAGTTGAAGGGGGTTCGGCTTCTGGTCGRATCTAAGTCAGCTTCAGGTCGGAAGTTGAGGGACCGTCGGCTTCAGCTCGGAACCTGGTCGACTTCAGGTCAGAAGTTAAACAGCGTTTGGATGTCACTGGCAACTTTTGGTCGGAAGTTGAGAGGGGTTCAGCTTCTGGTCGGATCTTGGTCAGATCTTTGTCAGATCTTGGTCGGCTTTAAGAAGCGTTGCGTATGCGACGCGTGCGTTTCTCATTCTTGTTTATTTTTTCAAAACTGTTTTCTTTTCTGCCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37221</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>25510</contig_pos>
        <strand></strand>
        <context>tcagatcttt[G/A]tcagatcttg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCGGAAGTTGAGAGGGGTTCAGCTTCTGGTCGGATCTTGGTCAGATCTTT</left_flank>
        <right_flank>TCAGATCTTGGTCGGCTTTAAGAAGCGTTGCGTATGCGACGCGTGCGTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATACTCGGTCGAAAACTTTAAGTTTGAAGCATACAATTATAAGGTGCGTAATCAGTTTGTGGACACCTGGACAAACAGACAGGCGCAAAATTCAAGGTTTTTTTTACGAAATTGAGAGAATTATTTTTTTTTAATTTCCGAATTTCTGGGAACTTTTTTTGTAAAATGGTTTTCCTAATTATTGTGATATGATTATTTTCATAGTACAATTAATTTCTTTTCTGTTTTAAATTTATTGAGCTTTTCTTGAAACAGTTTTTTTTCGATCGTTCACACCTCGGGTGCGGGACTGTAACTTTTGGTAGGAAGTTGAAGGGGGTTCGGCTTCTGGTCGAATCTAAGTCAGCTTCAGGTCGGAAGTTGAGGGACCGTCGGCTTCAGCTCGGAACCTGGTCGACTTCAGGTCAGAAGTTAAACAGCGTTTGGATGTCACTGGCAACTTTTGGTCGGAAGTTGAGAGGGGTTCAGCTTCTGGTCGGATCTTGGTCAGATCTTTGTCAGATCTTGGTCGGCTTTAAGAAGCGTTGCGTATGCGACGCGTGCGTTTCTCATTCTTGTTTATTTTTTCAAAACTGTTTTCTTTTCTGCCTTTTTACCTAAAAACGTTCGTTTTTGAATTTTCGTTGTAATTTACTTTTGAAACAGCACACATTTCATTTCGCTTTTTGTCGGCTTTAGTAGCGGTCTTGTCCATAATCCGACCAAGCAGCGCCCAGAAGCCGACGAAGATCCGACCAGAAGTTGCCGGCGACACCCGAGACATTCGTCAGATTTTTATGGACATTAGGGCTTGTGGGTTTGGACAAATAAACAACTGCAAACTTAAATGTCTCCTCTATTAAATTGGGAAAAGTTAATATGCACTATTAGGATTAAAAACAACTAACACTCCTTTCCAAACATTCATAAAAAATTACTGTTTCAAAATATTTCTATTAATGAGAAATCTCAAAGTTTCAATGTTAGTGTAAAGGAATGTGTAAGCACATCATAAATT</canonical>
            <polymorphic>TTTATACTCGGTCGAAAACTTTAAGTTTGAAGCATACAATTATAAGGTGCGTAATCAGTTTGTGGACACCTGGACAAACAGACAGGCGCAAAATTCAAGGTTTTTTTTACGAAATTGAGAGAATTATTTTTTTTTAATTTCCGAATTTCTGGGAACTTTTTTTGTAAAATGGTTTTCCTAATTATTGTGATATGATTATTTTCATAGTACAATTAATTTCTTTTCTGTTTTAAATTTATTGAGCTTTTCTTGAAACAGTTTTTTTTCGATCGTTCACACCTCGGGTGCGGGACTGTAACTTTTGGTAGGAAGTTGAAGGGGGTTCGGCTTCTGGTCGAATCTAAGTCAGCTTCAGGTCGGAAGTTGAGGGACCGTCGGCTTCAGCTCGGAACCTGGTCGACTTCAGGTCAGAAGTTAAACAGCGTTTGGATGTCACTGGCAACTTTTGGTCGGAAGTTGAGAGGGGTTCAGCTTCTGGTCGGATCTTGGTCAGATCTTTRTCAGATCTTGGTCGGCTTTAAGAAGCGTTGCGTATGCGACGCGTGCGTTTCTCATTCTTGTTTATTTTTTCAAAACTGTTTTCTTTTCTGCCTTTTTACCTAAAAACGTTCGTTTTTGAATTTTCGTTGTAATTTACTTTTGAAACAGCACACATTTCATTTCGCTTTTTGTCGGCTTTAGTAGCGGTCTTGTCCATAATCCGACCAAGCAGCGCCCAGAAGCCGACGAAGATCCGACCAGAAGTTGCCGGCGACACCCGAGACATTCGTCAGATTTTTATGGACATTAGGGCTTGTGGGTTTGGACAAATAAACAACTGCAAACTTAAATGTCTCCTCTATTAAATTGGGAAAAGTTAATATGCACTATTAGGATTAAAAACAACTAACACTCCTTTCCAAACATTCATAAAAAATTACTGTTTCAAAATATTTCTATTAATGAGAAATCTCAAAGTTTCAATGTTAGTGTAAAGGAATGTGTAAGCACATCATAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAAATTTATTGAGCTTTTCTTGA</pcr_primer_p1>
		<pcr_primer_p2>AAAGGCAGAAAAGAAAACAGT</pcr_primer_p2>
		<pcr_amplicon_size>366</pcr_amplicon_size>
		<canonical_amplicon>TTAAATTTATTGAGCTTTTCTTGAAACAGTTTTTTTTCGATCGTTCACACCTCGGGTGCGGGACTGTAACTTTTGGTAGGAAGTTGAAGGGGGTTCGGCTTCTGGTCGAATCTAAGTCAGCTTCAGGTCGGAAGTTGAGGGACCGTCGGCTTCAGCTCGGAACCTGGTCGACTTCAGGTCAGAAGTTAAACAGCGTTTGGATGTCACTGGCAACTTTTGGTCGGAAGTTGAGAGGGGTTCAGCTTCTGGTCGGATCTTGGTCAGATCTTTGTCAGATCTTGGTCGGCTTTAAGAAGCGTTGCGTATGCGACGCGTGCGTTTCTCATTCTTGTTTATTTTTTCAAAACTGTTTTCTTTTCTGCCTTT</canonical_amplicon>
		<polymorphic_amplicon>TTAAATTTATTGAGCTTTTCTTGAAACAGTTTTTTTTCGATCGTTCACACCTCGGGTGCGGGACTGTAACTTTTGGTAGGAAGTTGAAGGGGGTTCGGCTTCTGGTCGAATCTAAGTCAGCTTCAGGTCGGAAGTTGAGGGACCGTCGGCTTCAGCTCGGAACCTGGTCGACTTCAGGTCAGAAGTTAAACAGCGTTTGGATGTCACTGGCAACTTTTGGTCGGAAGTTGAGAGGGGTTCAGCTTCTGGTCGGATCTTGGTCAGATCTTTRTCAGATCTTGGTCGGCTTTAAGAAGCGTTGCGTATGCGACGCGTGCGTTTCTCATTCTTGTTTATTTTTTCAAAACTGTTTTCTTTTCTGCCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37222</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>25582</contig_pos>
        <strand></strand>
        <context>TTATTTTTTC[A/G]AAACTGTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGCGTTGCGTATGCGACGCGTGCGTTTCTCATTCTTGTTTATTTTTTC</left_flank>
        <right_flank>AAACTGTTTTCTTTTCTGCCTTTTTACCTAAAAACGTTCGTTTTTGAATT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACAAACAGACAGGCGCAAAATTCAAGGTTTTTTTTACGAAATTGAGAGAATTATTTTTTTTTAATTTCCGAATTTCTGGGAACTTTTTTTGTAAAATGGTTTTCCTAATTATTGTGATATGATTATTTTCATAGTACAATTAATTTCTTTTCTGTTTTAAATTTATTGAGCTTTTCTTGAAACAGTTTTTTTTCGATCGTTCACACCTCGGGTGCGGGACTGTAACTTTTGGTAGGAAGTTGAAGGGGGTTCGGCTTCTGGTCGAATCTAAGTCAGCTTCAGGTCGGAAGTTGAGGGACCGTCGGCTTCAGCTCGGAACCTGGTCGACTTCAGGTCAGAAGTTAAACAGCGTTTGGATGTCACTGGCAACTTTTGGTCGGAAGTTGAGAGGGGTTCAGCTTCTGGTCGGATCTTGGTCAGATCTTTGTCAGATCTTGGTCGGCTTTAAGAAGCGTTGCGTATGCGACGCGTGCGTTTCTCATTCTTGTTTATTTTTTCAAAACTGTTTTCTTTTCTGCCTTTTTACCTAAAAACGTTCGTTTTTGAATTTTCGTTGTAATTTACTTTTGAAACAGCACACATTTCATTTCGCTTTTTGTCGGCTTTAGTAGCGGTCTTGTCCATAATCCGACCAAGCAGCGCCCAGAAGCCGACGAAGATCCGACCAGAAGTTGCCGGCGACACCCGAGACATTCGTCAGATTTTTATGGACATTAGGGCTTGTGGGTTTGGACAAATAAACAACTGCAAACTTAAATGTCTCCTCTATTAAATTGGGAAAAGTTAATATGCACTATTAGGATTAAAAACAACTAACACTCCTTTCCAAACATTCATAAAAAATTACTGTTTCAAAATATTTCTATTAATGAGAAATCTCAAAGTTTCAATGTTAGTGTAAAGGAATGTGTAAGCACATCATAAATTTGTGGACATCTGACCAAACAAACACCTGCGAACTTAACGCAATATTTATGAAATTTAAAGAAATTACCATGC</canonical>
            <polymorphic>GACAAACAGACAGGCGCAAAATTCAAGGTTTTTTTTACGAAATTGAGAGAATTATTTTTTTTTAATTTCCGAATTTCTGGGAACTTTTTTTGTAAAATGGTTTTCCTAATTATTGTGATATGATTATTTTCATAGTACAATTAATTTCTTTTCTGTTTTAAATTTATTGAGCTTTTCTTGAAACAGTTTTTTTTCGATCGTTCACACCTCGGGTGCGGGACTGTAACTTTTGGTAGGAAGTTGAAGGGGGTTCGGCTTCTGGTCGAATCTAAGTCAGCTTCAGGTCGGAAGTTGAGGGACCGTCGGCTTCAGCTCGGAACCTGGTCGACTTCAGGTCAGAAGTTAAACAGCGTTTGGATGTCACTGGCAACTTTTGGTCGGAAGTTGAGAGGGGTTCAGCTTCTGGTCGGATCTTGGTCAGATCTTTGTCAGATCTTGGTCGGCTTTAAGAAGCGTTGCGTATGCGACGCGTGCGTTTCTCATTCTTGTTTATTTTTTCRAAACTGTTTTCTTTTCTGCCTTTTTACCTAAAAACGTTCGTTTTTGAATTTTCGTTGTAATTTACTTTTGAAACAGCACACATTTCATTTCGCTTTTTGTCGGCTTTAGTAGCGGTCTTGTCCATAATCCGACCAAGCAGCGCCCAGAAGCCGACGAAGATCCGACCAGAAGTTGCCGGCGACACCCGAGACATTCGTCAGATTTTTATGGACATTAGGGCTTGTGGGTTTGGACAAATAAACAACTGCAAACTTAAATGTCTCCTCTATTAAATTGGGAAAAGTTAATATGCACTATTAGGATTAAAAACAACTAACACTCCTTTCCAAACATTCATAAAAAATTACTGTTTCAAAATATTTCTATTAATGAGAAATCTCAAAGTTTCAATGTTAGTGTAAAGGAATGTGTAAGCACATCATAAATTTGTGGACATCTGACCAAACAAACACCTGCGAACTTAACGCAATATTTATGAAATTTAAAGAAATTACCATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAAATTTATTGAGCTTTTCTTGA</pcr_primer_p1>
		<pcr_primer_p2>GCTGTTTCAAAAGTAAATTACAAC</pcr_primer_p2>
		<pcr_amplicon_size>420</pcr_amplicon_size>
		<canonical_amplicon>TTAAATTTATTGAGCTTTTCTTGAAACAGTTTTTTTTCGATCGTTCACACCTCGGGTGCGGGACTGTAACTTTTGGTAGGAAGTTGAAGGGGGTTCGGCTTCTGGTCGAATCTAAGTCAGCTTCAGGTCGGAAGTTGAGGGACCGTCGGCTTCAGCTCGGAACCTGGTCGACTTCAGGTCAGAAGTTAAACAGCGTTTGGATGTCACTGGCAACTTTTGGTCGGAAGTTGAGAGGGGTTCAGCTTCTGGTCGGATCTTGGTCAGATCTTTGTCAGATCTTGGTCGGCTTTAAGAAGCGTTGCGTATGCGACGCGTGCGTTTCTCATTCTTGTTTATTTTTTCAAAACTGTTTTCTTTTCTGCCTTTTTACCTAAAAACGTTCGTTTTTGAATTTTCGTTGTAATTTACTTTTGAAACAGC</canonical_amplicon>
		<polymorphic_amplicon>TTAAATTTATTGAGCTTTTCTTGAAACAGTTTTTTTTCGATCGTTCACACCTCGGGTGCGGGACTGTAACTTTTGGTAGGAAGTTGAAGGGGGTTCGGCTTCTGGTCGAATCTAAGTCAGCTTCAGGTCGGAAGTTGAGGGACCGTCGGCTTCAGCTCGGAACCTGGTCGACTTCAGGTCAGAAGTTAAACAGCGTTTGGATGTCACTGGCAACTTTTGGTCGGAAGTTGAGAGGGGTTCAGCTTCTGGTCGGATCTTGGTCAGATCTTTGTCAGATCTTGGTCGGCTTTAAGAAGCGTTGCGTATGCGACGCGTGCGTTTCTCATTCTTGTTTATTTTTTCRAAACTGTTTTCTTTTCTGCCTTTTTACCTAAAAACGTTCGTTTTTGAATTTTCGTTGTAATTTACTTTTGAAACAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37223</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>25661</contig_pos>
        <strand>+</strand>
        <context>TGAAACAGCA[A/C]ACATTTYATT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAAAAACGTTCGTTTTTGAATTTTCGTTGTAATTTACTTTTGAAACAGCA</left_flank>
        <right_flank>ACATTTCATTTCGCTTTTTGTCGGCTTTAGTAGCGGTCTTGTCCATAATC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAACTTTTTTTGTAAAATGGTTTTCCTAATTATTGTGATATGATTATTTTCATAGTACAATTAATTTCTTTTCTGTTTTAAATTTATTGAGCTTTTCTTGAAACAGTTTTTTTTCGATCGTTCACACCTCGGGTGCGGGACTGTAACTTTTGGTAGGAAGTTGAAGGGGGTTCGGCTTCTGGTCGAATCTAAGTCAGCTTCAGGTCGGAAGTTGAGGGACCGTCGGCTTCAGCTCGGAACCTGGTCGACTTCAGGTCAGAAGTTAAACAGCGTTTGGATGTCACTGGCAACTTTTGGTCGGAAGTTGAGAGGGGTTCAGCTTCTGGTCGGATCTTGGTCAGATCTTTGTCAGATCTTGGTCGGCTTTAAGAAGCGTTGCGTATGCGACGCGTGCGTTTCTCATTCTTGTTTATTTTTTCAAAACTGTTTTCTTTTCTGCCTTTTTACCTAAAAACGTTCGTTTTTGAATTTTCGTTGTAATTTACTTTTGAAACAGCACACATTTCATTTCGCTTTTTGTCGGCTTTAGTAGCGGTCTTGTCCATAATCCGACCAAGCAGCGCCCAGAAGCCGACGAAGATCCGACCAGAAGTTGCCGGCGACACCCGAGACATTCGTCAGATTTTTATGGACATTAGGGCTTGTGGGTTTGGACAAATAAACAACTGCAAACTTAAATGTCTCCTCTATTAAATTGGGAAAAGTTAATATGCACTATTAGGATTAAAAACAACTAACACTCCTTTCCAAACATTCATAAAAAATTACTGTTTCAAAATATTTCTATTAATGAGAAATCTCAAAGTTTCAATGTTAGTGTAAAGGAATGTGTAAGCACATCATAAATTTGTGGACATCTGACCAAACAAACACCTGCGAACTTAACGCAATATTTATGAAATTTAAAGAAATTACCATGCGCTTTCACGATTTAAAGATAAAACAAAATTGAAATTTTTTGAAAACTAACAATCCGTTATAAAATTATCGAAAAATACT</canonical>
            <polymorphic>GGAACTTTTTTTGTAAAATGGTTTTCCTAATTATTGTGATATGATTATTTTCATAGTACAATTAATTTCTTTTCTGTTTTAAATTTATTGAGCTTTTCTTGAAACAGTTTTTTTTCGATCGTTCACACCTCGGGTGCGGGACTGTAACTTTTGGTAGGAAGTTGAAGGGGGTTCGGCTTCTGGTCGAATCTAAGTCAGCTTCAGGTCGGAAGTTGAGGGACCGTCGGCTTCAGCTCGGAACCTGGTCGACTTCAGGTCAGAAGTTAAACAGCGTTTGGATGTCACTGGCAACTTTTGGTCGGAAGTTGAGAGGGGTTCAGCTTCTGGTCGGATCTTGGTCAGATCTTTGTCAGATCTTGGTCGGCTTTAAGAAGCGTTGCGTATGCGACGCGTGCGTTTCTCATTCTTGTTTATTTTTTCAAAACTGTTTTCTTTTCTGCCTTTTTACCTAAAAACGTTCGTTTTTGAATTTTCGTTGTAATTTACTTTTGAAACAGCAMACATTTCATTTCGCTTTTTGTCGGCTTTAGTAGCGGTCTTGTCCATAATCCGACCAAGCAGCGCCCAGAAGCCGACGAAGATCCGACCAGAAGTTGCCGGCGACACCCGAGACATTCGTCAGATTTTTATGGACATTAGGGCTTGTGGGTTTGGACAAATAAACAACTGCAAACTTAAATGTCTCCTCTATTAAATTGGGAAAAGTTAATATGCACTATTAGGATTAAAAACAACTAACACTCCTTTCCAAACATTCATAAAAAATTACTGTTTCAAAATATTTCTATTAATGAGAAATCTCAAAGTTTCAATGTTAGTGTAAAGGAATGTGTAAGCACATCATAAATTTGTGGACATCTGACCAAACAAACACCTGCGAACTTAACGCAATATTTATGAAATTTAAAGAAATTACCATGCGCTTTCACGATTTAAAGATAAAACAAAATTGAAATTTTTTGAAAACTAACAATCCGTTATAAAATTATCGAAAAATACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>148 110 105 104 87 80 72 68 55 42 38 25 20 15 12 9 6 2 2</canonical_bands>
                <polymorphic_bands>211 148 110 87 80 72 68 55 42 38 25 20 15 12 9 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTTTTCTGCCTTTTTACCTA</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTGCAGTTGTTTATTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTCTTTTCTGCCTTTTTACCTAAAAACGTTCGTTTTTGAATTTTCGTTGTAATTTACTTTTGAAACAGCACACATTTCATTTCGCTTTTTGTCGGCTTTAGTAGCGGTCTTGTCCATAATCCGACCAAGCAGCGCCCAGAAGCCGACGAAGATCCGACCAGAAGTTGCCGGCGACACCCGAGACATTCGTCAGATTTTTATGGACATTAGGGCTTGTGGGTTTGGACAAATAAACAACTGCAAACTT</canonical_amplicon>
		<polymorphic_amplicon>TTCTTTTCTGCCTTTTTACCTAAAAACGTTCGTTTTTGAATTTTCGTTGTAATTTACTTTTGAAACAGCAMACATTTCATTTCGCTTTTTGTCGGCTTTAGTAGCGGTCTTGTCCATAATCCGACCAAGCAGCGCCCAGAAGCCGACGAAGATCCGACCAGAAGTTGCCGGCGACACCCGAGACATTCGTCAGATTTTTATGGACATTAGGGCTTGTGGGTTTGGACAAATAAACAACTGCAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37224</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>25668</contig_pos>
        <strand>+</strand>
        <context>GCAMACATTT[C/T]ATTTCGCTtt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTCGTTTTTGAATTTTCGTTGTAATTTACTTTTGAAACAGCACACATTT</left_flank>
        <right_flank>ATTTCGCTTTTTGTCGGCTTTAGTAGCGGTCTTGTCCATAATCCGACCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGTAAAATGGTTTTCCTAATTATTGTGATATGATTATTTTCATAGTACAATTAATTTCTTTTCTGTTTTAAATTTATTGAGCTTTTCTTGAAACAGTTTTTTTTCGATCGTTCACACCTCGGGTGCGGGACTGTAACTTTTGGTAGGAAGTTGAAGGGGGTTCGGCTTCTGGTCGAATCTAAGTCAGCTTCAGGTCGGAAGTTGAGGGACCGTCGGCTTCAGCTCGGAACCTGGTCGACTTCAGGTCAGAAGTTAAACAGCGTTTGGATGTCACTGGCAACTTTTGGTCGGAAGTTGAGAGGGGTTCAGCTTCTGGTCGGATCTTGGTCAGATCTTTGTCAGATCTTGGTCGGCTTTAAGAAGCGTTGCGTATGCGACGCGTGCGTTTCTCATTCTTGTTTATTTTTTCAAAACTGTTTTCTTTTCTGCCTTTTTACCTAAAAACGTTCGTTTTTGAATTTTCGTTGTAATTTACTTTTGAAACAGCACACATTTCATTTCGCTTTTTGTCGGCTTTAGTAGCGGTCTTGTCCATAATCCGACCAAGCAGCGCCCAGAAGCCGACGAAGATCCGACCAGAAGTTGCCGGCGACACCCGAGACATTCGTCAGATTTTTATGGACATTAGGGCTTGTGGGTTTGGACAAATAAACAACTGCAAACTTAAATGTCTCCTCTATTAAATTGGGAAAAGTTAATATGCACTATTAGGATTAAAAACAACTAACACTCCTTTCCAAACATTCATAAAAAATTACTGTTTCAAAATATTTCTATTAATGAGAAATCTCAAAGTTTCAATGTTAGTGTAAAGGAATGTGTAAGCACATCATAAATTTGTGGACATCTGACCAAACAAACACCTGCGAACTTAACGCAATATTTATGAAATTTAAAGAAATTACCATGCGCTTTCACGATTTAAAGATAAAACAAAATTGAAATTTTTTGAAAACTAACAATCCGTTATAAAATTATCGAAAAATACTGTTTCTA</canonical>
            <polymorphic>TTTTTGTAAAATGGTTTTCCTAATTATTGTGATATGATTATTTTCATAGTACAATTAATTTCTTTTCTGTTTTAAATTTATTGAGCTTTTCTTGAAACAGTTTTTTTTCGATCGTTCACACCTCGGGTGCGGGACTGTAACTTTTGGTAGGAAGTTGAAGGGGGTTCGGCTTCTGGTCGAATCTAAGTCAGCTTCAGGTCGGAAGTTGAGGGACCGTCGGCTTCAGCTCGGAACCTGGTCGACTTCAGGTCAGAAGTTAAACAGCGTTTGGATGTCACTGGCAACTTTTGGTCGGAAGTTGAGAGGGGTTCAGCTTCTGGTCGGATCTTGGTCAGATCTTTGTCAGATCTTGGTCGGCTTTAAGAAGCGTTGCGTATGCGACGCGTGCGTTTCTCATTCTTGTTTATTTTTTCAAAACTGTTTTCTTTTCTGCCTTTTTACCTAAAAACGTTCGTTTTTGAATTTTCGTTGTAATTTACTTTTGAAACAGCACACATTTYATTTCGCTTTTTGTCGGCTTTAGTAGCGGTCTTGTCCATAATCCGACCAAGCAGCGCCCAGAAGCCGACGAAGATCCGACCAGAAGTTGCCGGCGACACCCGAGACATTCGTCAGATTTTTATGGACATTAGGGCTTGTGGGTTTGGACAAATAAACAACTGCAAACTTAAATGTCTCCTCTATTAAATTGGGAAAAGTTAATATGCACTATTAGGATTAAAAACAACTAACACTCCTTTCCAAACATTCATAAAAAATTACTGTTTCAAAATATTTCTATTAATGAGAAATCTCAAAGTTTCAATGTTAGTGTAAAGGAATGTGTAAGCACATCATAAATTTGTGGACATCTGACCAAACAAACACCTGCGAACTTAACGCAATATTTATGAAATTTAAAGAAATTACCATGCGCTTTCACGATTTAAAGATAAAACAAAATTGAAATTTTTTGAAAACTAACAATCCGTTATAAAATTATCGAAAAATACTGTTTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTTTCTGCCTTTTTACCTA</pcr_primer_p1>
		<pcr_primer_p2>AAGTTTGCAGTTGTTTATTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTCTTTTCTGCCTTTTTACCTAAAAACGTTCGTTTTTGAATTTTCGTTGTAATTTACTTTTGAAACAGCACACATTTCATTTCGCTTTTTGTCGGCTTTAGTAGCGGTCTTGTCCATAATCCGACCAAGCAGCGCCCAGAAGCCGACGAAGATCCGACCAGAAGTTGCCGGCGACACCCGAGACATTCGTCAGATTTTTATGGACATTAGGGCTTGTGGGTTTGGACAAATAAACAACTGCAAACTT</canonical_amplicon>
		<polymorphic_amplicon>TTCTTTTCTGCCTTTTTACCTAAAAACGTTCGTTTTTGAATTTTCGTTGTAATTTACTTTTGAAACAGCACACATTTYATTTCGCTTTTTGTCGGCTTTAGTAGCGGTCTTGTCCATAATCCGACCAAGCAGCGCCCAGAAGCCGACGAAGATCCGACCAGAAGTTGCCGGCGACACCCGAGACATTCGTCAGATTTTTATGGACATTAGGGCTTGTGGGTTTGGACAAATAAACAACTGCAAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37225</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>27763</contig_pos>
        <strand>+</strand>
        <context>CTAAAAAACA[G/T]TTCAAAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTAAAATGGTATATGAAGCTAACAACTTGAAATAGTTACTAAAAAACA</left_flank>
        <right_flank>TTCAAAATTTACAGTGAACCAAGAAGTTTCGATTAAAAAATGAACCATAC</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAATTTTGTAATATTGAATTTGAACCTTCAAAACTTGAGAAAAGCTCTTGAAATTCAAAACTTGAAGTCAGCTTCAAAAATTATGAATGCAATTTTTGAAAAAAATTTATCACTGAATGAGAAGTTTGAACTCAATTCACATTAAAAATTCTAATAAATTGTAAGTATTAAACAAAAAAAATATTTTGATTTGAACATTGATGGATGATAGATAGTAACATTTTCAGAGCTTCTTGCAATTACAGTAACCATTCTGACTTGACGGTACACAGGGGGCACTATTGTAGCTCAGCCGGTAGCGGCGCAGCACCTCTAACGTTGGACCCACAAGTTTAACTCCTCGAAGGGCGCATATGAACGAAGCTTCGCGAATTTTTTTCATGATGAGAATAGACGGAACAAAAATCATTTAAAAGATGTTACATTCGGAATTATTTGAAACAGTAAATTTTAAAATGGTATATGAAGCTAACAACTTGAAATAGTTACTAAAAAACATTTCAAAATTTACAGTGAACCAAGAAGTTTCGATTAAAAAATGAACCATACTTTTCTGTTGAAAAATTCAAAGGGAACAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTATAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCA</canonical>
            <polymorphic>GTAATTTTGTAATATTGAATTTGAACCTTCAAAACTTGAGAAAAGCTCTTGAAATTCAAAACTTGAAGTCAGCTTCAAAAATTATGAATGCAATTTTTGAAAAAAATTTATCACTGAATGAGAAGTTTGAACTCAATTCACATTAAAAATTCTAATAAATTGTAAGTATTAAACAAAAAAAATATTTTGATTTGAACATTGATGGATGATAGATAGTAACATTTTCAGAGCTTCTTGCAATTACAGTAACCATTCTGACTTGACGGTACACAGGGGGCACTATTGTAGCTCAGCCGGTAGCGGCGCAGCACCTCTAACGTTGGACCCACAAGTTTAACTCCTCGAAGGGCGCATATGAACGAAGCTTCGCGAATTTTTTTCATGATGAGAATAGACGGAACAAAAATCATTTAAAAGATGTTACATTCGGAATTATTTGAAACAGTAAATTTTAAAATGGTATATGAAGCTAACAACTTGAAATAGTTACTAAAAAACAKTTCAAAATTTACAGTGAACCAAGAAGTTTCGATTAAAAAATGAACCATACTTTTCTGTTGAAAAATTCAAAGGGAACAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTATAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGGAATTATTTGAAACAGTAA</pcr_primer_p1>
		<pcr_primer_p2>AGGTAAACATTTTCATACTTTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCGGAATTATTTGAAACAGTAAATTTTAAAATGGTATATGAAGCTAACAACTTGAAATAGTTACTAAAAAACATTTCAAAATTTACAGTGAACCAAGAAGTTTCGATTAAAAAATGAACCATACTTTTCTGTTGAAAAATTCAAAGGGAACAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCT</canonical_amplicon>
		<polymorphic_amplicon>TTCGGAATTATTTGAAACAGTAAATTTTAAAATGGTATATGAAGCTAACAACTTGAAATAGTTACTAAAAAACAKTTCAAAATTTACAGTGAACCAAGAAGTTTCGATTAAAAAATGAACCATACTTTTCTGTTGAAAAATTCAAAGGGAACAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37226</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>27828</contig_pos>
        <strand>+</strand>
        <context>CTGTTGAAAA[A/G]TTCAAAGGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAACCAAGAAGTTTCGATTAAAAAATGAACCATACTTTTCTGTTGAAAA</left_flank>
        <right_flank>TTCAAAGGGAACAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTCAGCTTCAAAAATTATGAATGCAATTTTTGAAAAAAATTTATCACTGAATGAGAAGTTTGAACTCAATTCACATTAAAAATTCTAATAAATTGTAAGTATTAAACAAAAAAAATATTTTGATTTGAACATTGATGGATGATAGATAGTAACATTTTCAGAGCTTCTTGCAATTACAGTAACCATTCTGACTTGACGGTACACAGGGGGCACTATTGTAGCTCAGCCGGTAGCGGCGCAGCACCTCTAACGTTGGACCCACAAGTTTAACTCCTCGAAGGGCGCATATGAACGAAGCTTCGCGAATTTTTTTCATGATGAGAATAGACGGAACAAAAATCATTTAAAAGATGTTACATTCGGAATTATTTGAAACAGTAAATTTTAAAATGGTATATGAAGCTAACAACTTGAAATAGTTACTAAAAAACATTTCAAAATTTACAGTGAACCAAGAAGTTTCGATTAAAAAATGAACCATACTTTTCTGTTGAAAAATTCAAAGGGAACAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTATAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGA</canonical>
            <polymorphic>AAGTCAGCTTCAAAAATTATGAATGCAATTTTTGAAAAAAATTTATCACTGAATGAGAAGTTTGAACTCAATTCACATTAAAAATTCTAATAAATTGTAAGTATTAAACAAAAAAAATATTTTGATTTGAACATTGATGGATGATAGATAGTAACATTTTCAGAGCTTCTTGCAATTACAGTAACCATTCTGACTTGACGGTACACAGGGGGCACTATTGTAGCTCAGCCGGTAGCGGCGCAGCACCTCTAACGTTGGACCCACAAGTTTAACTCCTCGAAGGGCGCATATGAACGAAGCTTCGCGAATTTTTTTCATGATGAGAATAGACGGAACAAAAATCATTTAAAAGATGTTACATTCGGAATTATTTGAAACAGTAAATTTTAAAATGGTATATGAAGCTAACAACTTGAAATAGTTACTAAAAAACATTTCAAAATTTACAGTGAACCAAGAAGTTTCGATTAAAAAATGAACCATACTTTTCTGTTGAAAARTTCAAAGGGAACAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTATAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>224 171 133 104 76 58 58 43 39 38 36 20</canonical_bands>
                <polymorphic_bands>224 191 171 104 76 58 43 39 38 36 20</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>133 81 77 77 72 59 58 58 55 49 38 32 30 25 19 17 17 14 14 13 13 12 10 10 10 7</canonical_bands>
                <polymorphic_bands>133 107 81 77 77 72 59 58 55 38 32 30 25 19 17 17 14 14 13 13 12 10 10 10 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCGGAATTATTTGAAACAGTAA</pcr_primer_p1>
		<pcr_primer_p2>AGGTAAACATTTTCATACTTTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCGGAATTATTTGAAACAGTAAATTTTAAAATGGTATATGAAGCTAACAACTTGAAATAGTTACTAAAAAACATTTCAAAATTTACAGTGAACCAAGAAGTTTCGATTAAAAAATGAACCATACTTTTCTGTTGAAAAATTCAAAGGGAACAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCT</canonical_amplicon>
		<polymorphic_amplicon>TTCGGAATTATTTGAAACAGTAAATTTTAAAATGGTATATGAAGCTAACAACTTGAAATAGTTACTAAAAAACATTTCAAAATTTACAGTGAACCAAGAAGTTTCGATTAAAAAATGAACCATACTTTTCTGTTGAAAARTTCAAAGGGAACAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37227</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>27903</contig_pos>
        <strand>+</strand>
        <context>AGGACGAGAT[A/T]TAATGAAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGAT</left_flank>
        <right_flank>TAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTAAAAATTCTAATAAATTGTAAGTATTAAACAAAAAAAATATTTTGATTTGAACATTGATGGATGATAGATAGTAACATTTTCAGAGCTTCTTGCAATTACAGTAACCATTCTGACTTGACGGTACACAGGGGGCACTATTGTAGCTCAGCCGGTAGCGGCGCAGCACCTCTAACGTTGGACCCACAAGTTTAACTCCTCGAAGGGCGCATATGAACGAAGCTTCGCGAATTTTTTTCATGATGAGAATAGACGGAACAAAAATCATTTAAAAGATGTTACATTCGGAATTATTTGAAACAGTAAATTTTAAAATGGTATATGAAGCTAACAACTTGAAATAGTTACTAAAAAACATTTCAAAATTTACAGTGAACCAAGAAGTTTCGATTAAAAAATGAACCATACTTTTCTGTTGAAAAATTCAAAGGGAACAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTATAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTT</canonical>
            <polymorphic>CATTAAAAATTCTAATAAATTGTAAGTATTAAACAAAAAAAATATTTTGATTTGAACATTGATGGATGATAGATAGTAACATTTTCAGAGCTTCTTGCAATTACAGTAACCATTCTGACTTGACGGTACACAGGGGGCACTATTGTAGCTCAGCCGGTAGCGGCGCAGCACCTCTAACGTTGGACCCACAAGTTTAACTCCTCGAAGGGCGCATATGAACGAAGCTTCGCGAATTTTTTTCATGATGAGAATAGACGGAACAAAAATCATTTAAAAGATGTTACATTCGGAATTATTTGAAACAGTAAATTTTAAAATGGTATATGAAGCTAACAACTTGAAATAGTTACTAAAAAACATTTCAAAATTTACAGTGAACCAAGAAGTTTCGATTAAAAAATGAACCATACTTTTCTGTTGAAAAATTCAAAGGGAACAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATWTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTATAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>278 165 107 81 77 76 55 46 45 41 26 3</canonical_bands>
                <polymorphic_bands>278 165 153 81 77 76 55 45 41 26 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGAACCATACTTTTCTGTTG</pcr_primer_p1>
		<pcr_primer_p2>ATCCTATACATGCCTAATTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATGAACCATACTTTTCTGTTGAAAAATTCAAAGGGAACAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGAT</canonical_amplicon>
		<polymorphic_amplicon>AAATGAACCATACTTTTCTGTTGAAAAATTCAAAGGGAACAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATWTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37228</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>27956</contig_pos>
        <strand>+</strand>
        <context>TTATTAAAAC[A/T]GCAAATTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAAC</left_flank>
        <right_flank>GCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACATTGATGGATGATAGATAGTAACATTTTCAGAGCTTCTTGCAATTACAGTAACCATTCTGACTTGACGGTACACAGGGGGCACTATTGTAGCTCAGCCGGTAGCGGCGCAGCACCTCTAACGTTGGACCCACAAGTTTAACTCCTCGAAGGGCGCATATGAACGAAGCTTCGCGAATTTTTTTCATGATGAGAATAGACGGAACAAAAATCATTTAAAAGATGTTACATTCGGAATTATTTGAAACAGTAAATTTTAAAATGGTATATGAAGCTAACAACTTGAAATAGTTACTAAAAAACATTTCAAAATTTACAGTGAACCAAGAAGTTTCGATTAAAAAATGAACCATACTTTTCTGTTGAAAAATTCAAAGGGAACAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTATAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAAT</canonical>
            <polymorphic>GAACATTGATGGATGATAGATAGTAACATTTTCAGAGCTTCTTGCAATTACAGTAACCATTCTGACTTGACGGTACACAGGGGGCACTATTGTAGCTCAGCCGGTAGCGGCGCAGCACCTCTAACGTTGGACCCACAAGTTTAACTCCTCGAAGGGCGCATATGAACGAAGCTTCGCGAATTTTTTTCATGATGAGAATAGACGGAACAAAAATCATTTAAAAGATGTTACATTCGGAATTATTTGAAACAGTAAATTTTAAAATGGTATATGAAGCTAACAACTTGAAATAGTTACTAAAAAACATTTCAAAATTTACAGTGAACCAAGAAGTTTCGATTAAAAAATGAACCATACTTTTCTGTTGAAAAATTCAAAGGGAACAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACWGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTATAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>380 194 161 134 77 44 10</canonical_bands>
                <polymorphic_bands>380 238 194 134 44 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGAACCATACTTTTCTGTTG</pcr_primer_p1>
		<pcr_primer_p2>ATCCTATACATGCCTAATTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATGAACCATACTTTTCTGTTGAAAAATTCAAAGGGAACAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGAT</canonical_amplicon>
		<polymorphic_amplicon>AAATGAACCATACTTTTCTGTTGAAAAATTCAAAGGGAACAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACWGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37229</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>27987</contig_pos>
        <strand>+</strand>
        <context>CAATATATAT[C/G]AAAAAAACTA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATAT</left_flank>
        <right_flank>AAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGAGCTTCTTGCAATTACAGTAACCATTCTGACTTGACGGTACACAGGGGGCACTATTGTAGCTCAGCCGGTAGCGGCGCAGCACCTCTAACGTTGGACCCACAAGTTTAACTCCTCGAAGGGCGCATATGAACGAAGCTTCGCGAATTTTTTTCATGATGAGAATAGACGGAACAAAAATCATTTAAAAGATGTTACATTCGGAATTATTTGAAACAGTAAATTTTAAAATGGTATATGAAGCTAACAACTTGAAATAGTTACTAAAAAACATTTCAAAATTTACAGTGAACCAAGAAGTTTCGATTAAAAAATGAACCATACTTTTCTGTTGAAAAATTCAAAGGGAACAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTATAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCGAAATTTCAGATTTCGGAAAAGCGAGAATC</canonical>
            <polymorphic>TCAGAGCTTCTTGCAATTACAGTAACCATTCTGACTTGACGGTACACAGGGGGCACTATTGTAGCTCAGCCGGTAGCGGCGCAGCACCTCTAACGTTGGACCCACAAGTTTAACTCCTCGAAGGGCGCATATGAACGAAGCTTCGCGAATTTTTTTCATGATGAGAATAGACGGAACAAAAATCATTTAAAAGATGTTACATTCGGAATTATTTGAAACAGTAAATTTTAAAATGGTATATGAAGCTAACAACTTGAAATAGTTACTAAAAAACATTTCAAAATTTACAGTGAACCAAGAAGTTTCGATTAAAAAATGAACCATACTTTTCTGTTGAAAAATTCAAAGGGAACAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATSAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTATAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCGAAATTTCAGATTTCGGAAAAGCGAGAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGAACCATACTTTTCTGTTG</pcr_primer_p1>
		<pcr_primer_p2>ATCCTATACATGCCTAATTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATGAACCATACTTTTCTGTTGAAAAATTCAAAGGGAACAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGAT</canonical_amplicon>
		<polymorphic_amplicon>AAATGAACCATACTTTTCTGTTGAAAAATTCAAAGGGAACAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATSAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37230</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>28013</contig_pos>
        <strand></strand>
        <context>CTTAATGAAA[C/G]TGAATAAGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAA</left_flank>
        <right_flank>TGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTCTGACTTGACGGTACACAGGGGGCACTATTGTAGCTCAGCCGGTAGCGGCGCAGCACCTCTAACGTTGGACCCACAAGTTTAACTCCTCGAAGGGCGCATATGAACGAAGCTTCGCGAATTTTTTTCATGATGAGAATAGACGGAACAAAAATCATTTAAAAGATGTTACATTCGGAATTATTTGAAACAGTAAATTTTAAAATGGTATATGAAGCTAACAACTTGAAATAGTTACTAAAAAACATTTCAAAATTTACAGTGAACCAAGAAGTTTCGATTAAAAAATGAACCATACTTTTCTGTTGAAAAATTCAAAGGGAACAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTATAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCGAAATTTCAGATTTCGGAAAAGCGAGAATCGGTTCATCTTTGAAAAATTATATTTT</canonical>
            <polymorphic>CATTCTGACTTGACGGTACACAGGGGGCACTATTGTAGCTCAGCCGGTAGCGGCGCAGCACCTCTAACGTTGGACCCACAAGTTTAACTCCTCGAAGGGCGCATATGAACGAAGCTTCGCGAATTTTTTTCATGATGAGAATAGACGGAACAAAAATCATTTAAAAGATGTTACATTCGGAATTATTTGAAACAGTAAATTTTAAAATGGTATATGAAGCTAACAACTTGAAATAGTTACTAAAAAACATTTCAAAATTTACAGTGAACCAAGAAGTTTCGATTAAAAAATGAACCATACTTTTCTGTTGAAAAATTCAAAGGGAACAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAASTGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTATAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCGAAATTTCAGATTTCGGAAAAGCGAGAATCGGTTCATCTTTGAAAAATTATATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGATTTGGAGACATTGATTA</pcr_primer_p1>
		<pcr_primer_p2>TAAATGGTAAAATTTCAGACGAT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>AAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTA</canonical_amplicon>
		<polymorphic_amplicon>AAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAASTGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37231</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>28140</contig_pos>
        <strand>+</strand>
        <context>GGATTACTTA[C/T]AGTTTCGTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTA</left_flank>
        <right_flank>AGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCATGATGAGAATAGACGGAACAAAAATCATTTAAAAGATGTTACATTCGGAATTATTTGAAACAGTAAATTTTAAAATGGTATATGAAGCTAACAACTTGAAATAGTTACTAAAAAACATTTCAAAATTTACAGTGAACCAAGAAGTTTCGATTAAAAAATGAACCATACTTTTCTGTTGAAAAATTCAAAGGGAACAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTATAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCGAAATTTCAGATTTCGGAAAAGCGAGAATCGGTTCATCTTTGAAAAATTATATTTTCACATGGATGCTACAAAACTTGAGAAAAATGAATAAGCTAGATTTCCGATTTCGACCTATAGCTACATGCAAATGATTGTCTGAAATGTTACTGCTTCATTCAAGACATACTTTTGAAACAGCAAAC</canonical>
            <polymorphic>TTTCATGATGAGAATAGACGGAACAAAAATCATTTAAAAGATGTTACATTCGGAATTATTTGAAACAGTAAATTTTAAAATGGTATATGAAGCTAACAACTTGAAATAGTTACTAAAAAACATTTCAAAATTTACAGTGAACCAAGAAGTTTCGATTAAAAAATGAACCATACTTTTCTGTTGAAAAATTCAAAGGGAACAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTAYAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCGAAATTTCAGATTTCGGAAAAGCGAGAATCGGTTCATCTTTGAAAAATTATATTTTCACATGGATGCTACAAAACTTGAGAAAAATGAATAAGCTAGATTTCCGATTTCGACCTATAGCTACATGCAAATGATTGTCTGAAATGTTACTGCTTCATTCAAGACATACTTTTGAAACAGCAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAATTAGGCATGTATAGGAT</pcr_primer_p1>
		<pcr_primer_p2>ATTGAAGAAAATTCTAAAAATGAAG</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTATAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTAYAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37232</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>28235</contig_pos>
        <strand>+</strand>
        <context>CAGAATACGG[A/G]ATTTCTAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGG</left_flank>
        <right_flank>ATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAACTTGAAATAGTTACTAAAAAACATTTCAAAATTTACAGTGAACCAAGAAGTTTCGATTAAAAAATGAACCATACTTTTCTGTTGAAAAATTCAAAGGGAACAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTATAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCGAAATTTCAGATTTCGGAAAAGCGAGAATCGGTTCATCTTTGAAAAATTATATTTTCACATGGATGCTACAAAACTTGAGAAAAATGAATAAGCTAGATTTCCGATTTCGACCTATAGCTACATGCAAATGATTGTCTGAAATGTTACTGCTTCATTCAAGACATACTTTTGAAACAGCAAACATTTTATTTCACTTTATATTAACAACCAGCAAGCTGGTGCGCCTTCGGCGCGAATCAATCTAGTTTTTTAATGTTCGTTGCTTCGAAAGTTTACG</canonical>
            <polymorphic>ACAACTTGAAATAGTTACTAAAAAACATTTCAAAATTTACAGTGAACCAAGAAGTTTCGATTAAAAAATGAACCATACTTTTCTGTTGAAAAATTCAAAGGGAACAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTATAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGRATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCGAAATTTCAGATTTCGGAAAAGCGAGAATCGGTTCATCTTTGAAAAATTATATTTTCACATGGATGCTACAAAACTTGAGAAAAATGAATAAGCTAGATTTCCGATTTCGACCTATAGCTACATGCAAATGATTGTCTGAAATGTTACTGCTTCATTCAAGACATACTTTTGAAACAGCAAACATTTTATTTCACTTTATATTAACAACCAGCAAGCTGGTGCGCCTTCGGCGCGAATCAATCTAGTTTTTTAATGTTCGTTGCTTCGAAAGTTTACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>276 171 169 133 104 58 36 33 20</canonical_bands>
                <polymorphic_bands>276 207 169 133 104 58 33 20</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>233 88 77 77 72 71 58 55 49 43 33 32 25 19 17 14 10 10 10 7</canonical_bands>
                <polymorphic_bands>233 96 88 77 72 71 58 55 49 43 33 32 25 17 14 10 10 10 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTATCGTCTGAAATTTTACCA</pcr_primer_p1>
		<pcr_primer_p2>AGTCGCCATTGTGTCTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>AACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTATAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACT</canonical_amplicon>
		<polymorphic_amplicon>AACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTATAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGRATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37233</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>28258</contig_pos>
        <strand>+</strand>
        <context>TTGGACAATT[C/T]CTTCATTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATT</left_flank>
        <right_flank>CTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACATTTCAAAATTTACAGTGAACCAAGAAGTTTCGATTAAAAAATGAACCATACTTTTCTGTTGAAAAATTCAAAGGGAACAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTATAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCGAAATTTCAGATTTCGGAAAAGCGAGAATCGGTTCATCTTTGAAAAATTATATTTTCACATGGATGCTACAAAACTTGAGAAAAATGAATAAGCTAGATTTCCGATTTCGACCTATAGCTACATGCAAATGATTGTCTGAAATGTTACTGCTTCATTCAAGACATACTTTTGAAACAGCAAACATTTTATTTCACTTTATATTAACAACCAGCAAGCTGGTGCGCCTTCGGCGCGAATCAATCTAGTTTTTTAATGTTCGTTGCTTCGAAAGTTTACGGACTGATACCGGGACGGACAGAC</canonical>
            <polymorphic>AACATTTCAAAATTTACAGTGAACCAAGAAGTTTCGATTAAAAAATGAACCATACTTTTCTGTTGAAAAATTCAAAGGGAACAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTATAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTYCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCGAAATTTCAGATTTCGGAAAAGCGAGAATCGGTTCATCTTTGAAAAATTATATTTTCACATGGATGCTACAAAACTTGAGAAAAATGAATAAGCTAGATTTCCGATTTCGACCTATAGCTACATGCAAATGATTGTCTGAAATGTTACTGCTTCATTCAAGACATACTTTTGAAACAGCAAACATTTTATTTCACTTTATATTAACAACCAGCAAGCTGGTGCGCCTTCGGCGCGAATCAATCTAGTTTTTTAATGTTCGTTGCTTCGAAAGTTTACGGACTGATACCGGGACGGACAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAAAACCGGAATACAGA</pcr_primer_p1>
		<pcr_primer_p2>CGATTAATTGTGCAGTTATTTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCG</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTYCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37234</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>28331</contig_pos>
        <strand>+</strand>
        <context>TGTCCTGAAA[A/T]AAGTTTCMMT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAA</left_flank>
        <right_flank>AAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGGGAACAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTATAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCGAAATTTCAGATTTCGGAAAAGCGAGAATCGGTTCATCTTTGAAAAATTATATTTTCACATGGATGCTACAAAACTTGAGAAAAATGAATAAGCTAGATTTCCGATTTCGACCTATAGCTACATGCAAATGATTGTCTGAAATGTTACTGCTTCATTCAAGACATACTTTTGAAACAGCAAACATTTTATTTCACTTTATATTAACAACCAGCAAGCTGGTGCGCCTTCGGCGCGAATCAATCTAGTTTTTTAATGTTCGTTGCTTCGAAAGTTTACGGACTGATACCGGGACGGACAGACGCCTCTAGTCTAGTTTTTTATTTATAACGAAGATTAAAAATCCCTAAATTGTGACATTGTTATTCTGACTAAT</canonical>
            <polymorphic>AAAGGGAACAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTATAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAWAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCGAAATTTCAGATTTCGGAAAAGCGAGAATCGGTTCATCTTTGAAAAATTATATTTTCACATGGATGCTACAAAACTTGAGAAAAATGAATAAGCTAGATTTCCGATTTCGACCTATAGCTACATGCAAATGATTGTCTGAAATGTTACTGCTTCATTCAAGACATACTTTTGAAACAGCAAACATTTTATTTCACTTTATATTAACAACCAGCAAGCTGGTGCGCCTTCGGCGCGAATCAATCTAGTTTTTTAATGTTCGTTGCTTCGAAAGTTTACGGACTGATACCGGGACGGACAGACGCCTCTAGTCTAGTTTTTTATTTATAACGAAGATTAAAAATCCCTAAATTGTGACATTGTTATTCTGACTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAAACCGGAATACAGAATAC</pcr_primer_p1>
		<pcr_primer_p2>CGATTAATTGTGCAGTTATTTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCG</canonical_amplicon>
		<polymorphic_amplicon>AAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAWAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37235</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>28339</contig_pos>
        <strand></strand>
        <context>AAWAAGTTTC[C/A]MTGTTTAGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTC</left_flank>
        <right_flank>CTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATC</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTATAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCGAAATTTCAGATTTCGGAAAAGCGAGAATCGGTTCATCTTTGAAAAATTATATTTTCACATGGATGCTACAAAACTTGAGAAAAATGAATAAGCTAGATTTCCGATTTCGACCTATAGCTACATGCAAATGATTGTCTGAAATGTTACTGCTTCATTCAAGACATACTTTTGAAACAGCAAACATTTTATTTCACTTTATATTAACAACCAGCAAGCTGGTGCGCCTTCGGCGCGAATCAATCTAGTTTTTTAATGTTCGTTGCTTCGAAAGTTTACGGACTGATACCGGGACGGACAGACGCCTCTAGTCTAGTTTTTTATTTATAACGAAGATTAAAAATCCCTAAATTGTGACATTGTTATTCTGACTAATACATTACT</canonical>
            <polymorphic>CAAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTATAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCMCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCGAAATTTCAGATTTCGGAAAAGCGAGAATCGGTTCATCTTTGAAAAATTATATTTTCACATGGATGCTACAAAACTTGAGAAAAATGAATAAGCTAGATTTCCGATTTCGACCTATAGCTACATGCAAATGATTGTCTGAAATGTTACTGCTTCATTCAAGACATACTTTTGAAACAGCAAACATTTTATTTCACTTTATATTAACAACCAGCAAGCTGGTGCGCCTTCGGCGCGAATCAATCTAGTTTTTTAATGTTCGTTGCTTCGAAAGTTTACGGACTGATACCGGGACGGACAGACGCCTCTAGTCTAGTTTTTTATTTATAACGAAGATTAAAAATCCCTAAATTGTGACATTGTTATTCTGACTAATACATTACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAAAACCGGAATACAGAATAC</pcr_primer_p1>
		<pcr_primer_p2>CGATTAATTGTGCAGTTATTTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCG</canonical_amplicon>
		<polymorphic_amplicon>AAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCMCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37236</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>28340</contig_pos>
        <strand>+</strand>
        <context>AWAAGTTTCM[A/C]TGTTTAGGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCC</left_flank>
        <right_flank>TGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTATAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCGAAATTTCAGATTTCGGAAAAGCGAGAATCGGTTCATCTTTGAAAAATTATATTTTCACATGGATGCTACAAAACTTGAGAAAAATGAATAAGCTAGATTTCCGATTTCGACCTATAGCTACATGCAAATGATTGTCTGAAATGTTACTGCTTCATTCAAGACATACTTTTGAAACAGCAAACATTTTATTTCACTTTATATTAACAACCAGCAAGCTGGTGCGCCTTCGGCGCGAATCAATCTAGTTTTTTAATGTTCGTTGCTTCGAAAGTTTACGGACTGATACCGGGACGGACAGACGCCTCTAGTCTAGTTTTTTATTTATAACGAAGATTAAAAATCCCTAAATTGTGACATTGTTATTCTGACTAATACATTACTT</canonical>
            <polymorphic>AAGGATTTGGAGACATTGATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTATAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCMTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCGAAATTTCAGATTTCGGAAAAGCGAGAATCGGTTCATCTTTGAAAAATTATATTTTCACATGGATGCTACAAAACTTGAGAAAAATGAATAAGCTAGATTTCCGATTTCGACCTATAGCTACATGCAAATGATTGTCTGAAATGTTACTGCTTCATTCAAGACATACTTTTGAAACAGCAAACATTTTATTTCACTTTATATTAACAACCAGCAAGCTGGTGCGCCTTCGGCGCGAATCAATCTAGTTTTTTAATGTTCGTTGCTTCGAAAGTTTACGGACTGATACCGGGACGGACAGACGCCTCTAGTCTAGTTTTTTATTTATAACGAAGATTAAAAATCCCTAAATTGTGACATTGTTATTCTGACTAATACATTACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAAACCGGAATACAGAATAC</pcr_primer_p1>
		<pcr_primer_p2>CGATTAATTGTGCAGTTATTTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCG</canonical_amplicon>
		<polymorphic_amplicon>AAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCMTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37237</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>28357</contig_pos>
        <strand></strand>
        <context>GGTATCGTTT[C/T]YGCACGGCCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTT</left_flank>
        <right_flank>GGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAA</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTATAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCGAAATTTCAGATTTCGGAAAAGCGAGAATCGGTTCATCTTTGAAAAATTATATTTTCACATGGATGCTACAAAACTTGAGAAAAATGAATAAGCTAGATTTCCGATTTCGACCTATAGCTACATGCAAATGATTGTCTGAAATGTTACTGCTTCATTCAAGACATACTTTTGAAACAGCAAACATTTTATTTCACTTTATATTAACAACCAGCAAGCTGGTGCGCCTTCGGCGCGAATCAATCTAGTTTTTTAATGTTCGTTGCTTCGAAAGTTTACGGACTGATACCGGGACGGACAGACGCCTCTAGTCTAGTTTTTTATTTATAACGAAGATTAAAAATCCCTAAATTGTGACATTGTTATTCTGACTAATACATTACTTATCGTAATGGTATTGGA</canonical>
            <polymorphic>GATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTATAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTYGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCGAAATTTCAGATTTCGGAAAAGCGAGAATCGGTTCATCTTTGAAAAATTATATTTTCACATGGATGCTACAAAACTTGAGAAAAATGAATAAGCTAGATTTCCGATTTCGACCTATAGCTACATGCAAATGATTGTCTGAAATGTTACTGCTTCATTCAAGACATACTTTTGAAACAGCAAACATTTTATTTCACTTTATATTAACAACCAGCAAGCTGGTGCGCCTTCGGCGCGAATCAATCTAGTTTTTTAATGTTCGTTGCTTCGAAAGTTTACGGACTGATACCGGGACGGACAGACGCCTCTAGTCTAGTTTTTTATTTATAACGAAGATTAAAAATCCCTAAATTGTGACATTGTTATTCTGACTAATACATTACTTATCGTAATGGTATTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAAACCGGAATACAGAATAC</pcr_primer_p1>
		<pcr_primer_p2>CGATTAATTGTGCAGTTATTTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCG</canonical_amplicon>
		<polymorphic_amplicon>AAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTYGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37238</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>28358</contig_pos>
        <strand>+</strand>
        <context>GTATCGTTTY[C/T]GCACGGCCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTC</left_flank>
        <right_flank>GCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTATAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCGAAATTTCAGATTTCGGAAAAGCGAGAATCGGTTCATCTTTGAAAAATTATATTTTCACATGGATGCTACAAAACTTGAGAAAAATGAATAAGCTAGATTTCCGATTTCGACCTATAGCTACATGCAAATGATTGTCTGAAATGTTACTGCTTCATTCAAGACATACTTTTGAAACAGCAAACATTTTATTTCACTTTATATTAACAACCAGCAAGCTGGTGCGCCTTCGGCGCGAATCAATCTAGTTTTTTAATGTTCGTTGCTTCGAAAGTTTACGGACTGATACCGGGACGGACAGACGCCTCTAGTCTAGTTTTTTATTTATAACGAAGATTAAAAATCCCTAAATTGTGACATTGTTATTCTGACTAATACATTACTTATCGTAATGGTATTGGAA</canonical>
            <polymorphic>ATTAGGAAAACGTGCTCAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTATAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCYGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCGAAATTTCAGATTTCGGAAAAGCGAGAATCGGTTCATCTTTGAAAAATTATATTTTCACATGGATGCTACAAAACTTGAGAAAAATGAATAAGCTAGATTTCCGATTTCGACCTATAGCTACATGCAAATGATTGTCTGAAATGTTACTGCTTCATTCAAGACATACTTTTGAAACAGCAAACATTTTATTTCACTTTATATTAACAACCAGCAAGCTGGTGCGCCTTCGGCGCGAATCAATCTAGTTTTTTAATGTTCGTTGCTTCGAAAGTTTACGGACTGATACCGGGACGGACAGACGCCTCTAGTCTAGTTTTTTATTTATAACGAAGATTAAAAATCCCTAAATTGTGACATTGTTATTCTGACTAATACATTACTTATCGTAATGGTATTGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAAACCGGAATACAGAATAC</pcr_primer_p1>
		<pcr_primer_p2>CGATTAATTGTGCAGTTATTTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCG</canonical_amplicon>
		<polymorphic_amplicon>AAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCYGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37239</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>28374</contig_pos>
        <strand>+</strand>
        <context>GCCTGTTGTT[C/T]AAAAAATTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTT</left_flank>
        <right_flank>AAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTATAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCGAAATTTCAGATTTCGGAAAAGCGAGAATCGGTTCATCTTTGAAAAATTATATTTTCACATGGATGCTACAAAACTTGAGAAAAATGAATAAGCTAGATTTCCGATTTCGACCTATAGCTACATGCAAATGATTGTCTGAAATGTTACTGCTTCATTCAAGACATACTTTTGAAACAGCAAACATTTTATTTCACTTTATATTAACAACCAGCAAGCTGGTGCGCCTTCGGCGCGAATCAATCTAGTTTTTTAATGTTCGTTGCTTCGAAAGTTTACGGACTGATACCGGGACGGACAGACGCCTCTAGTCTAGTTTTTTATTTATAACGAAGATTAAAAATCCCTAAATTGTGACATTGTTATTCTGACTAATACATTACTTATCGTAATGGTATTGGAAAAATTTAGAAACAGTA</canonical>
            <polymorphic>CAATTGCAAATTGAAACGAGGACGAGATTTAATGAAACTATTGAAAGTATGAAAATGTTTACCTTTGAAGGTTATTAAAACTGCAAATTTTAGAATGGCATCCAATATATATAAAAAAAACTAAAAAACTTAATGAAACTGAATAAGTTATATTTTCAATTAGGCATGTATAGGATAACTATCGTCTGAAATTTTACCATTTAGTTTAACACATAATTTAGAAACAGCAATTGTTATATTGTTGCACTGATTAATGGATTACTTATAGTTTCGTTGACGAAAAAATTATGAAACAGTAAAAATATCAGAGACTTTCGAAGGAAGGGAATGGAAAAAAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTYAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCGAAATTTCAGATTTCGGAAAAGCGAGAATCGGTTCATCTTTGAAAAATTATATTTTCACATGGATGCTACAAAACTTGAGAAAAATGAATAAGCTAGATTTCCGATTTCGACCTATAGCTACATGCAAATGATTGTCTGAAATGTTACTGCTTCATTCAAGACATACTTTTGAAACAGCAAACATTTTATTTCACTTTATATTAACAACCAGCAAGCTGGTGCGCCTTCGGCGCGAATCAATCTAGTTTTTTAATGTTCGTTGCTTCGAAAGTTTACGGACTGATACCGGGACGGACAGACGCCTCTAGTCTAGTTTTTTATTTATAACGAAGATTAAAAATCCCTAAATTGTGACATTGTTATTCTGACTAATACATTACTTATCGTAATGGTATTGGAAAAATTTAGAAACAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAAACCGGAATACAGAATAC</pcr_primer_p1>
		<pcr_primer_p2>CGATTAATTGTGCAGTTATTTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTCAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCG</canonical_amplicon>
		<polymorphic_amplicon>AAGAAAACCGGAATACAGAATACGGAATTTCTAATGTTTTGGACAATTCCTTCATTTTTAGAATTTTCTTCAATTTTTAGAAATTTAGACACAATGGCGACTGCAAATGATTGTCCTGAAAAAAGTTTCCCTGTTTAGGTATCGTTTCGGCACGGCCTGTTGTTYAAAAAATTGTTTATCAGTTCAGTTTTTTTTGAAACAGCAAATGCTTTTTTTTCGGTCATGAAGAAATAACTGCACAATTAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37240</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>71531</contig_pos>
        <strand>+</strand>
        <context>cgacgggctc[C/T]tatgaacAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAGCGACGCGGCACCGTTAGACCCACAAGTTCAAGTCCCCGACGGGCTC</left_flank>
        <right_flank>TATGAACAAAACTTTGATTAAATTATTTTTTCATGTCCCACCACCTTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCGGAATCGTCTTACCTTGTGCACATTCATTCTAAGATGGAGTTTATCGGTAGTGATATCGACCAAAGCTATAATTATGTGATTCGACACGGATTCCATTTGAACGAATGGTTTTATAATTGTACCGGAATCGATGGATTCGCATTGGGAGTTCCTCGGCCATGGCTTGGTTCTTATTTTCTGACAGTCGGAGTTGTTCTGATGGTAAGAGATCATAACTAATAAAGTTTTCACAACTATGGTGGAAATATAACTTTTCCGATTCTCATATTTACAAAAATTCCTTAAAACAGAGAAACTTTTTAAGATTTGCCTTTTTTCGGAGTTACGGTTTACCTGACGGTGTGTAGTTATTAGTTTTCACTTAGCTATCGTGCCGCTTTGCATATGATATGATATGATATCGGTCGGAAGCGCAGCACGAAAGCGCAGCACATAGCTCAGCTGGAAGCGACGCGGCACCGTTAGACCCACAAGTTCAAGTCCCCGACGGGCTCATATGAACAAAACTTTGATTAAATTATTTTTTCATGTCCCACCACCTTTCAAGTTTCACGTTAGAGGCTCCTACTATCATAGGTTTTACGGCAAAGCAGGTTGTTCGGAAACAACAAAAAACAACAAAAACAACAAAAAACAACAAAACCAATGAGCATAATGCTGAAATATCGATTCATAAGTTTACAAACATTCATTGAAACAGAAAGTTTTTGAAAATGTAACAGTCAAGAGTTGGTGGTGGAAAAAATCATCCCATACCGTATTTCCTCTGATAGATGTCCATCCCAACCGTCAAGTTCAATTATCTCTATTGAGTTCAATTATTTCTATTCTTGTGCTGGACATCAAAAATATGTCAACTGATAAAATGTTTGGGGTCCCACGGTCATATGTTATACGTAAATCAAACTGGTGGCAATCAAATGTTCTCACTATCAGAAAAACCAAATCCGAATAGTTTGTTTGAGCCTAATGCTAATGCTAAAATGTATATTCAC</canonical>
            <polymorphic>AAGCGGAATCGTCTTACCTTGTGCACATTCATTCTAAGATGGAGTTTATCGGTAGTGATATCGACCAAAGCTATAATTATGTGATTCGACACGGATTCCATTTGAACGAATGGTTTTATAATTGTACCGGAATCGATGGATTCGCATTGGGAGTTCCTCGGCCATGGCTTGGTTCTTATTTTCTGACAGTCGGAGTTGTTCTGATGGTAAGAGATCATAACTAATAAAGTTTTCACAACTATGGTGGAAATATAACTTTTCCGATTCTCATATTTACAAAAATTCCTTAAAACAGAGAAACTTTTTAAGATTTGCCTTTTTTCGGAGTTACGGTTTACCTGACGGTGTGTAGTTATTAGTTTTCACTTAGCTATCGTGCCGCTTTGCATATGATATGATATGATATCGGTCGGAAGCGCAGCACGAAAGCGCAGCACATAGCTCAGCTGGAAGCGACGCGGCACCGTTAGACCCACAAGTTCAAGTCCCCGACGGGCTCYTATGAACAAAACTTTGATTAAATTATTTTTTCATGTCCCACCACCTTTCAAGTTTCACGTTAGAGGCTCCTACTATCATAGGTTTTACGGCAAAGCAGGTTGTTCGGAAACAACAAAAAACAACAAAAACAACAAAAAACAACAAAACCAATGAGCATAATGCTGAAATATCGATTCATAAGTTTACAAACATTCATTGAAACAGAAAGTTTTTGAAAATGTAACAGTCAAGAGTTGGTGGTGGAAAAAATCATCCCATACCGTATTTCCTCTGATAGATGTCCATCCCAACCGTCAAGTTCAATTATCTCTATTGAGTTCAATTATTTCTATTCTTGTGCTGGACATCAAAAATATGTCAACTGATAAAATGTTTGGGGTCCCACGGTCATATGTTATACGTAAATCAAACTGGTGGCAATCAAATGTTCTCACTATCAGAAAAACCAAATCCGAATAGTTTGTTTGAGCCTAATGCTAATGCTAAAATGTATATTCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATATG</site>
                <isoschizomers>
                    <enzyme>FauNDI</enzyme>
                    <enzyme>NdeI</enzyme>
                </isoschizomers>
                <canonical_bands>391 388 112 109</canonical_bands>
                <polymorphic_bands>503 388 109</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCGGAGTTACGGTTTAC</pcr_primer_p1>
		<pcr_primer_p2>TAACGTGAAACTTGAAAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCGGAGTTACGGTTTACCTGACGGTGTGTAGTTATTAGTTTTCACTTAGCTATCGTGCCGCTTTGCATATGATATGATATGATATCGGTCGGAAGCGCAGCACGAAAGCGCAGCACATAGCTCAGCTGGAAGCGACGCGGCACCGTTAGACCCACAAGTTCAAGTCCCCGACGGGCTCATATGAACAAAACTTTGATTAAATTATTTTTTCATGTCCCACCACCTTTCAAGTTTCACGTTA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCGGAGTTACGGTTTACCTGACGGTGTGTAGTTATTAGTTTTCACTTAGCTATCGTGCCGCTTTGCATATGATATGATATGATATCGGTCGGAAGCGCAGCACGAAAGCGCAGCACATAGCTCAGCTGGAAGCGACGCGGCACCGTTAGACCCACAAGTTCAAGTCCCCGACGGGCTCYTATGAACAAAACTTTGATTAAATTATTTTTTCATGTCCCACCACCTTTCAAGTTTCACGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37241</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>74011</contig_pos>
        <strand>+</strand>
        <context>AGTTTTGGAA[C/T]TGATATTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATGAGGTTTAGGTTCTGGGGTGGTTTCAAAGATTCTTGGAGTTTTGGAA</left_flank>
        <right_flank>TGATATTTTGAATTTTGGATATTAAATGTTCGGAACCCTTGAAATATATA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGAGCGCAATTACTTCGTCAAGTGATTGAAGAACTCCCAAGATGTAGACATCACACCAGTGGATGGATTTTCCGACGAAATAGTCTCCCTTGCTCTTCTTCAACAGGTCTTGCATGATTTCCAGCTTTCCTGGCATCGTGTCCTTGTAGTGTTTTTGAAAACCCTCCTGGAAAATGAAGAAAATTTCATTTGAAAATTTGATCTTCTCACTTTGATGCTATCCGGAGCATACTTTGCCATGGCGGCCAACTGGAATAGATCCGCAAATCCATCAGCCATCATGTCCACTTTGGCCGAGTCGGTCTTCGTGGCACCGCCCAGCCATCTATCTGGATGAACTGATTTGGCCAGGTAACGACAGATGGAAACCGTTTGGCAGAGAGTGACTTTGCCTCCGTCTATTTCGATGAATGGAACTTGTTTCATTGGGGCTTCTGGAAATGGAAAAGATGAGGTTTAGGTTCTGGGGTGGTTTCAAAGATTCTTGGAGTTTTGGAATTGATATTTTGAATTTTGGATATTAAATGTTCGGAACCCTTGAAATATATAAATGTTGGAAGTTCCACCTGGGAATATCAAAATCTCTGAAATTATTCAAGTTTCTCAACTTTTCTTCAATTTGAAAAATGATCTGAGTTTTATTTCGAATTTTTCGAGTTTTCAAGACTTAAATGCTGAAAATCCAGAATATTGGAACTTTGGTATTTTAGAATATTGAAATTCAAGAATCTTTGGGTGAAGGAATTTACAAATTTGGAAATCTGAGAATTTCTGAGTTTCAGAGTTTTTCAAAATTTCCGAATTTTCTAAATTTTGTAATTCAAGTTAAAAAAACAATCAATTAGGAATTTCAAACTATTGAAATTTCAGACTCTTCTGGTCTGAGAATCTCAGGATCTGAAAATTTCAATTTTTTGAATTTATGAATTTCTGAATTTTCTGGTTGTTCTAAATTTTTTAATTACTTGAATTTTCTGAAACTTTTCAACTTTCTGAACG</canonical>
            <polymorphic>TAGAGCGCAATTACTTCGTCAAGTGATTGAAGAACTCCCAAGATGTAGACATCACACCAGTGGATGGATTTTCCGACGAAATAGTCTCCCTTGCTCTTCTTCAACAGGTCTTGCATGATTTCCAGCTTTCCTGGCATCGTGTCCTTGTAGTGTTTTTGAAAACCCTCCTGGAAAATGAAGAAAATTTCATTTGAAAATTTGATCTTCTCACTTTGATGCTATCCGGAGCATACTTTGCCATGGCGGCCAACTGGAATAGATCCGCAAATCCATCAGCCATCATGTCCACTTTGGCCGAGTCGGTCTTCGTGGCACCGCCCAGCCATCTATCTGGATGAACTGATTTGGCCAGGTAACGACAGATGGAAACCGTTTGGCAGAGAGTGACTTTGCCTCCGTCTATTTCGATGAATGGAACTTGTTTCATTGGGGCTTCTGGAAATGGAAAAGATGAGGTTTAGGTTCTGGGGTGGTTTCAAAGATTCTTGGAGTTTTGGAAYTGATATTTTGAATTTTGGATATTAAATGTTCGGAACCCTTGAAATATATAAATGTTGGAAGTTCCACCTGGGAATATCAAAATCTCTGAAATTATTCAAGTTTCTCAACTTTTCTTCAATTTGAAAAATGATCTGAGTTTTATTTCGAATTTTTCGAGTTTTCAAGACTTAAATGCTGAAAATCCAGAATATTGGAACTTTGGTATTTTAGAATATTGAAATTCAAGAATCTTTGGGTGAAGGAATTTACAAATTTGGAAATCTGAGAATTTCTGAGTTTCAGAGTTTTTCAAAATTTCCGAATTTTCTAAATTTTGTAATTCAAGTTAAAAAAACAATCAATTAGGAATTTCAAACTATTGAAATTTCAGACTCTTCTGGTCTGAGAATCTCAGGATCTGAAAATTTCAATTTTTTGAATTTATGAATTTCTGAATTTTCTGGTTGTTCTAAATTTTTTAATTACTTGAATTTTCTGAAACTTTTCAACTTTCTGAACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>302 174 79 72 40 31 30 28 26 24 22 18 16 16 13 13 9 9 9 8 8 8 8 8 8 8 7 6</canonical_bands>
                <polymorphic_bands>315 174 79 72 40 31 30 28 26 24 22 18 16 16 13 9 9 9 8 8 8 8 8 8 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTTCGATGAATGGAACTTGT</pcr_primer_p1>
		<pcr_primer_p2>TTCGAAATAAAACTCAGATCATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATTTCGATGAATGGAACTTGTTTCATTGGGGCTTCTGGAAATGGAAAAGATGAGGTTTAGGTTCTGGGGTGGTTTCAAAGATTCTTGGAGTTTTGGAATTGATATTTTGAATTTTGGATATTAAATGTTCGGAACCCTTGAAATATATAAATGTTGGAAGTTCCACCTGGGAATATCAAAATCTCTGAAATTATTCAAGTTTCTCAACTTTTCTTCAATTTGAAAAATGATCTGAGTTTTATTTCGAA</canonical_amplicon>
		<polymorphic_amplicon>TATTTCGATGAATGGAACTTGTTTCATTGGGGCTTCTGGAAATGGAAAAGATGAGGTTTAGGTTCTGGGGTGGTTTCAAAGATTCTTGGAGTTTTGGAAYTGATATTTTGAATTTTGGATATTAAATGTTCGGAACCCTTGAAATATATAAATGTTGGAAGTTCCACCTGGGAATATCAAAATCTCTGAAATTATTCAAGTTTCTCAACTTTTCTTCAATTTGAAAAATGATCTGAGTTTTATTTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37242</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>83257</contig_pos>
        <strand></strand>
        <context>GAAATTTAAG[G/A]TTCTCTAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTTTTTGAATGAAGCATAGGGAATTAAGAGGGACCGCCTGGAAATTTAAG</left_flank>
        <right_flank>TTCTCTAAATCTTGATTTTAAAAGATATGGAGGTGGTGGTGGTGGCGGCG</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTCATTATAAATTACAGACAAAGTTTCAATACCTCGTATTTAGTTGGGGGACATAAAAAACAATAAAAATGAGATTCATCCTAGATTGAAGCCAGCTCCGCCATTTCCAGCGCCCAAGAATTGTCCGAATAGTTTGAAAAGATCGTTGCCAGGATTTATAGGTACTCCAGGAATGATGGCGGCTGAAAAATGATCCAGAAGTTAGACAAGTAGAGTCTAAGGCTTCCAATCGAACGGGAAATTCAGTCGACCGAGCTGACCGATCGCTCAACTTGGTCGGCGGTCCCGTGAACCCTTAGTAGAGTCAGACAGAAAAAAAAATCTCACGTGCTGGTGCTGAGGTAGTCGTTGATGGCGCTGGAATCTCTACACATTTCCCATTTTTCGGTGCAAATCCACATCTACACATGCATCGTCCGCGATAGCAGCCAGAGTTTGGAGGACACTGTTTTTGAATGAAGCATAGGGAATTAAGAGGGACCGCCTGGAAATTTAAGGTTCTCTAAATCTTGATTTTAAAAGATATGGAGGTGGTGGTGGTGGCGGCGGCGGATGCCTATGGTCCCCCAGGTTCTAACACCTGCCCACCAGGACAAGCCGGACTCGATGGACTTCCAGGAGCTCCAAGACACACAGGAGCCATCGGAGGAGCTGGACCTAACGGGGAGGAGCCGGAGGATGCAAGACCTGCCCAGCCGGACCGCCAGGACCAGCAGGATCAGCTCGGAAAGCTGGACGCCCAGGAATTCAATGTATTTCAAGAATCCCACCTTCATGCAACTGGTATCCTTTGACAAATTCTCATTCTCACAATCTCTCGAACACGATTGTGATGGATTTTTCAGCGGATTAGTAAGCACATCGACAGCTGGATGGAAGTTTTGCTGACACTGACACTGTCCTTTCATGCATTCCATGCCTTCTCCACCTCCGCACTGAGCGTTTGATATGCAGGCAGAGTTGAGTTGTCCACGTGGAATACACTGATTGTTGGCGTA</canonical>
            <polymorphic>ACTTCATTATAAATTACAGACAAAGTTTCAATACCTCGTATTTAGTTGGGGGACATAAAAAACAATAAAAATGAGATTCATCCTAGATTGAAGCCAGCTCCGCCATTTCCAGCGCCCAAGAATTGTCCGAATAGTTTGAAAAGATCGTTGCCAGGATTTATAGGTACTCCAGGAATGATGGCGGCTGAAAAATGATCCAGAAGTTAGACAAGTAGAGTCTAAGGCTTCCAATCGAACGGGAAATTCAGTCGACCGAGCTGACCGATCGCTCAACTTGGTCGGCGGTCCCGTGAACCCTTAGTAGAGTCAGACAGAAAAAAAAATCTCACGTGCTGGTGCTGAGGTAGTCGTTGATGGCGCTGGAATCTCTACACATTTCCCATTTTTCGGTGCAAATCCACATCTACACATGCATCGTCCGCGATAGCAGCCAGAGTTTGGAGGACACTGTTTTTGAATGAAGCATAGGGAATTAAGAGGGACCGCCTGGAAATTTAAGRTTCTCTAAATCTTGATTTTAAAAGATATGGAGGTGGTGGTGGTGGCGGCGGCGGATGCCTATGGTCCCCCAGGTTCTAACACCTGCCCACCAGGACAAGCCGGACTCGATGGACTTCCAGGAGCTCCAAGACACACAGGAGCCATCGGAGGAGCTGGACCTAACGGGGAGGAGCCGGAGGATGCAAGACCTGCCCAGCCGGACCGCCAGGACCAGCAGGATCAGCTCGGAAAGCTGGACGCCCAGGAATTCAATGTATTTCAAGAATCCCACCTTCATGCAACTGGTATCCTTTGACAAATTCTCATTCTCACAATCTCTCGAACACGATTGTGATGGATTTTTCAGCGGATTAGTAAGCACATCGACAGCTGGATGGAAGTTTTGCTGACACTGACACTGTCCTTTCATGCATTCCATGCCTTCTCCACCTCCGCACTGAGCGTTTGATATGCAGGCAGAGTTGAGTTGTCCACGTGGAATACACTGATTGTTGGCGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTTTGAATGAAGCATAGG</pcr_primer_p1>
		<pcr_primer_p2>GGGATTCTTGAAATACATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>322</pcr_amplicon_size>
		<canonical_amplicon>TGTTTTTGAATGAAGCATAGGGAATTAAGAGGGACCGCCTGGAAATTTAAGGTTCTCTAAATCTTGATTTTAAAAGATATGGAGGTGGTGGTGGTGGCGGCGGCGGATGCCTATGGTCCCCCAGGTTCTAACACCTGCCCACCAGGACAAGCCGGACTCGATGGACTTCCAGGAGCTCCAAGACACACAGGAGCCATCGGAGGAGCTGGACCTAACGGGGAGGAGCCGGAGGATGCAAGACCTGCCCAGCCGGACCGCCAGGACCAGCAGGATCAGCTCGGAAAGCTGGACGCCCAGGAATTCAATGTATTTCAAGAATCCC</canonical_amplicon>
		<polymorphic_amplicon>TGTTTTTGAATGAAGCATAGGGAATTAAGAGGGACCGCCTGGAAATTTAAGRTTCTCTAAATCTTGATTTTAAAAGATATGGAGGTGGTGGTGGTGGCGGCGGCGGATGCCTATGGTCCCCCAGGTTCTAACACCTGCCCACCAGGACAAGCCGGACTCGATGGACTTCCAGGAGCTCCAAGACACACAGGAGCCATCGGAGGAGCTGGACCTAACGGGGAGGAGCCGGAGGATGCAAGACCTGCCCAGCCGGACCGCCAGGACCAGCAGGATCAGCTCGGAAAGCTGGACGCCCAGGAATTCAATGTATTTCAAGAATCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37243</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>83317</contig_pos>
        <strand></strand>
        <context>GGCGGATGCC[T/A]ATGGTCCCCC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCTTGATTTTAAAAGATATGGAGGTGGTGGTGGTGGCGGCGGCGGATGCC</left_flank>
        <right_flank>ATGGTCCCCCAGGTTCTAACACCTGCCCACCAGGACAAGCCGGACTCGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAATAAAAATGAGATTCATCCTAGATTGAAGCCAGCTCCGCCATTTCCAGCGCCCAAGAATTGTCCGAATAGTTTGAAAAGATCGTTGCCAGGATTTATAGGTACTCCAGGAATGATGGCGGCTGAAAAATGATCCAGAAGTTAGACAAGTAGAGTCTAAGGCTTCCAATCGAACGGGAAATTCAGTCGACCGAGCTGACCGATCGCTCAACTTGGTCGGCGGTCCCGTGAACCCTTAGTAGAGTCAGACAGAAAAAAAAATCTCACGTGCTGGTGCTGAGGTAGTCGTTGATGGCGCTGGAATCTCTACACATTTCCCATTTTTCGGTGCAAATCCACATCTACACATGCATCGTCCGCGATAGCAGCCAGAGTTTGGAGGACACTGTTTTTGAATGAAGCATAGGGAATTAAGAGGGACCGCCTGGAAATTTAAGGTTCTCTAAATCTTGATTTTAAAAGATATGGAGGTGGTGGTGGTGGCGGCGGCGGATGCCTATGGTCCCCCAGGTTCTAACACCTGCCCACCAGGACAAGCCGGACTCGATGGACTTCCAGGAGCTCCAAGACACACAGGAGCCATCGGAGGAGCTGGACCTAACGGGGAGGAGCCGGAGGATGCAAGACCTGCCCAGCCGGACCGCCAGGACCAGCAGGATCAGCTCGGAAAGCTGGACGCCCAGGAATTCAATGTATTTCAAGAATCCCACCTTCATGCAACTGGTATCCTTTGACAAATTCTCATTCTCACAATCTCTCGAACACGATTGTGATGGATTTTTCAGCGGATTAGTAAGCACATCGACAGCTGGATGGAAGTTTTGCTGACACTGACACTGTCCTTTCATGCATTCCATGCCTTCTCCACCTCCGCACTGAGCGTTTGATATGCAGGCAGAGTTGAGTTGTCCACGTGGAATACACTGATTGTTGGCGTAGAGAGCGTTCGGAGCCATCGCGTTACAAGGACGACGACAGCAGACTGCTTGGGAGAAACT</canonical>
            <polymorphic>AACAATAAAAATGAGATTCATCCTAGATTGAAGCCAGCTCCGCCATTTCCAGCGCCCAAGAATTGTCCGAATAGTTTGAAAAGATCGTTGCCAGGATTTATAGGTACTCCAGGAATGATGGCGGCTGAAAAATGATCCAGAAGTTAGACAAGTAGAGTCTAAGGCTTCCAATCGAACGGGAAATTCAGTCGACCGAGCTGACCGATCGCTCAACTTGGTCGGCGGTCCCGTGAACCCTTAGTAGAGTCAGACAGAAAAAAAAATCTCACGTGCTGGTGCTGAGGTAGTCGTTGATGGCGCTGGAATCTCTACACATTTCCCATTTTTCGGTGCAAATCCACATCTACACATGCATCGTCCGCGATAGCAGCCAGAGTTTGGAGGACACTGTTTTTGAATGAAGCATAGGGAATTAAGAGGGACCGCCTGGAAATTTAAGGTTCTCTAAATCTTGATTTTAAAAGATATGGAGGTGGTGGTGGTGGCGGCGGCGGATGCCWATGGTCCCCCAGGTTCTAACACCTGCCCACCAGGACAAGCCGGACTCGATGGACTTCCAGGAGCTCCAAGACACACAGGAGCCATCGGAGGAGCTGGACCTAACGGGGAGGAGCCGGAGGATGCAAGACCTGCCCAGCCGGACCGCCAGGACCAGCAGGATCAGCTCGGAAAGCTGGACGCCCAGGAATTCAATGTATTTCAAGAATCCCACCTTCATGCAACTGGTATCCTTTGACAAATTCTCATTCTCACAATCTCTCGAACACGATTGTGATGGATTTTTCAGCGGATTAGTAAGCACATCGACAGCTGGATGGAAGTTTTGCTGACACTGACACTGTCCTTTCATGCATTCCATGCCTTCTCCACCTCCGCACTGAGCGTTTGATATGCAGGCAGAGTTGAGTTGTCCACGTGGAATACACTGATTGTTGGCGTAGAGAGCGTTCGGAGCCATCGCGTTACAAGGACGACGACAGCAGACTGCTTGGGAGAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAAATCTTGATTTTAAAAGATATGG</pcr_primer_p1>
		<pcr_primer_p2>GGGATTCTTGAAATACATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>266</pcr_amplicon_size>
		<canonical_amplicon>CTAAATCTTGATTTTAAAAGATATGGAGGTGGTGGTGGTGGCGGCGGCGGATGCCTATGGTCCCCCAGGTTCTAACACCTGCCCACCAGGACAAGCCGGACTCGATGGACTTCCAGGAGCTCCAAGACACACAGGAGCCATCGGAGGAGCTGGACCTAACGGGGAGGAGCCGGAGGATGCAAGACCTGCCCAGCCGGACCGCCAGGACCAGCAGGATCAGCTCGGAAAGCTGGACGCCCAGGAATTCAATGTATTTCAAGAATCCC</canonical_amplicon>
		<polymorphic_amplicon>CTAAATCTTGATTTTAAAAGATATGGAGGTGGTGGTGGTGGCGGCGGCGGATGCCWATGGTCCCCCAGGTTCTAACACCTGCCCACCAGGACAAGCCGGACTCGATGGACTTCCAGGAGCTCCAAGACACACAGGAGCCATCGGAGGAGCTGGACCTAACGGGGAGGAGCCGGAGGATGCAAGACCTGCCCAGCCGGACCGCCAGGACCAGCAGGATCAGCTCGGAAAGCTGGACGCCCAGGAATTCAATGTATTTCAAGAATCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37244</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>83334</contig_pos>
        <strand></strand>
        <context>CCCCAGGTTC[T/C]AACACCTGCC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATGGAGGTGGTGGTGGTGGCGGCGGCGGATGCCTATGGTCCCCCAGGTTC</left_flank>
        <right_flank>AACACCTGCCCACCAGGACAAGCCGGACTCGATGGACTTCCAGGAGCTCC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATCCTAGATTGAAGCCAGCTCCGCCATTTCCAGCGCCCAAGAATTGTCCGAATAGTTTGAAAAGATCGTTGCCAGGATTTATAGGTACTCCAGGAATGATGGCGGCTGAAAAATGATCCAGAAGTTAGACAAGTAGAGTCTAAGGCTTCCAATCGAACGGGAAATTCAGTCGACCGAGCTGACCGATCGCTCAACTTGGTCGGCGGTCCCGTGAACCCTTAGTAGAGTCAGACAGAAAAAAAAATCTCACGTGCTGGTGCTGAGGTAGTCGTTGATGGCGCTGGAATCTCTACACATTTCCCATTTTTCGGTGCAAATCCACATCTACACATGCATCGTCCGCGATAGCAGCCAGAGTTTGGAGGACACTGTTTTTGAATGAAGCATAGGGAATTAAGAGGGACCGCCTGGAAATTTAAGGTTCTCTAAATCTTGATTTTAAAAGATATGGAGGTGGTGGTGGTGGCGGCGGCGGATGCCTATGGTCCCCCAGGTTCTAACACCTGCCCACCAGGACAAGCCGGACTCGATGGACTTCCAGGAGCTCCAAGACACACAGGAGCCATCGGAGGAGCTGGACCTAACGGGGAGGAGCCGGAGGATGCAAGACCTGCCCAGCCGGACCGCCAGGACCAGCAGGATCAGCTCGGAAAGCTGGACGCCCAGGAATTCAATGTATTTCAAGAATCCCACCTTCATGCAACTGGTATCCTTTGACAAATTCTCATTCTCACAATCTCTCGAACACGATTGTGATGGATTTTTCAGCGGATTAGTAAGCACATCGACAGCTGGATGGAAGTTTTGCTGACACTGACACTGTCCTTTCATGCATTCCATGCCTTCTCCACCTCCGCACTGAGCGTTTGATATGCAGGCAGAGTTGAGTTGTCCACGTGGAATACACTGATTGTTGGCGTAGAGAGCGTTCGGAGCCATCGCGTTACAAGGACGACGACAGCAGACTGCTTGGGAGAAACTGCCGTCTGAAATTTTTA</canonical>
            <polymorphic>TCATCCTAGATTGAAGCCAGCTCCGCCATTTCCAGCGCCCAAGAATTGTCCGAATAGTTTGAAAAGATCGTTGCCAGGATTTATAGGTACTCCAGGAATGATGGCGGCTGAAAAATGATCCAGAAGTTAGACAAGTAGAGTCTAAGGCTTCCAATCGAACGGGAAATTCAGTCGACCGAGCTGACCGATCGCTCAACTTGGTCGGCGGTCCCGTGAACCCTTAGTAGAGTCAGACAGAAAAAAAAATCTCACGTGCTGGTGCTGAGGTAGTCGTTGATGGCGCTGGAATCTCTACACATTTCCCATTTTTCGGTGCAAATCCACATCTACACATGCATCGTCCGCGATAGCAGCCAGAGTTTGGAGGACACTGTTTTTGAATGAAGCATAGGGAATTAAGAGGGACCGCCTGGAAATTTAAGGTTCTCTAAATCTTGATTTTAAAAGATATGGAGGTGGTGGTGGTGGCGGCGGCGGATGCCTATGGTCCCCCAGGTTCYAACACCTGCCCACCAGGACAAGCCGGACTCGATGGACTTCCAGGAGCTCCAAGACACACAGGAGCCATCGGAGGAGCTGGACCTAACGGGGAGGAGCCGGAGGATGCAAGACCTGCCCAGCCGGACCGCCAGGACCAGCAGGATCAGCTCGGAAAGCTGGACGCCCAGGAATTCAATGTATTTCAAGAATCCCACCTTCATGCAACTGGTATCCTTTGACAAATTCTCATTCTCACAATCTCTCGAACACGATTGTGATGGATTTTTCAGCGGATTAGTAAGCACATCGACAGCTGGATGGAAGTTTTGCTGACACTGACACTGTCCTTTCATGCATTCCATGCCTTCTCCACCTCCGCACTGAGCGTTTGATATGCAGGCAGAGTTGAGTTGTCCACGTGGAATACACTGATTGTTGGCGTAGAGAGCGTTCGGAGCCATCGCGTTACAAGGACGACGACAGCAGACTGCTTGGGAGAAACTGCCGTCTGAAATTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTAAAAGATATGGAGGTGGT</pcr_primer_p1>
		<pcr_primer_p2>GGGATTCTTGAAATACATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATTTTAAAAGATATGGAGGTGGTGGTGGTGGCGGCGGCGGATGCCTATGGTCCCCCAGGTTCTAACACCTGCCCACCAGGACAAGCCGGACTCGATGGACTTCCAGGAGCTCCAAGACACACAGGAGCCATCGGAGGAGCTGGACCTAACGGGGAGGAGCCGGAGGATGCAAGACCTGCCCAGCCGGACCGCCAGGACCAGCAGGATCAGCTCGGAAAGCTGGACGCCCAGGAATTCAATGTATTTCAAGAATCCC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTAAAAGATATGGAGGTGGTGGTGGTGGCGGCGGCGGATGCCTATGGTCCCCCAGGTTCYAACACCTGCCCACCAGGACAAGCCGGACTCGATGGACTTCCAGGAGCTCCAAGACACACAGGAGCCATCGGAGGAGCTGGACCTAACGGGGAGGAGCCGGAGGATGCAAGACCTGCCCAGCCGGACCGCCAGGACCAGCAGGATCAGCTCGGAAAGCTGGACGCCCAGGAATTCAATGTATTTCAAGAATCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37245</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>83425</contig_pos>
        <strand></strand>
        <context>ACCTAACGGG[G/A]AGGAGCCGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAGGAGCTCCAAGACACACAGGAGCCATCGGAGGAGCTGGACCTAACGGG</left_flank>
        <right_flank>AGGAGCCGGAGGATGCAAGACCTGCCCAGCCGGACCGCCAGGACCAGCAG</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGGAATGATGGCGGCTGAAAAATGATCCAGAAGTTAGACAAGTAGAGTCTAAGGCTTCCAATCGAACGGGAAATTCAGTCGACCGAGCTGACCGATCGCTCAACTTGGTCGGCGGTCCCGTGAACCCTTAGTAGAGTCAGACAGAAAAAAAAATCTCACGTGCTGGTGCTGAGGTAGTCGTTGATGGCGCTGGAATCTCTACACATTTCCCATTTTTCGGTGCAAATCCACATCTACACATGCATCGTCCGCGATAGCAGCCAGAGTTTGGAGGACACTGTTTTTGAATGAAGCATAGGGAATTAAGAGGGACCGCCTGGAAATTTAAGGTTCTCTAAATCTTGATTTTAAAAGATATGGAGGTGGTGGTGGTGGCGGCGGCGGATGCCTATGGTCCCCCAGGTTCTAACACCTGCCCACCAGGACAAGCCGGACTCGATGGACTTCCAGGAGCTCCAAGACACACAGGAGCCATCGGAGGAGCTGGACCTAACGGGGAGGAGCCGGAGGATGCAAGACCTGCCCAGCCGGACCGCCAGGACCAGCAGGATCAGCTCGGAAAGCTGGACGCCCAGGAATTCAATGTATTTCAAGAATCCCACCTTCATGCAACTGGTATCCTTTGACAAATTCTCATTCTCACAATCTCTCGAACACGATTGTGATGGATTTTTCAGCGGATTAGTAAGCACATCGACAGCTGGATGGAAGTTTTGCTGACACTGACACTGTCCTTTCATGCATTCCATGCCTTCTCCACCTCCGCACTGAGCGTTTGATATGCAGGCAGAGTTGAGTTGTCCACGTGGAATACACTGATTGTTGGCGTAGAGAGCGTTCGGAGCCATCGCGTTACAAGGACGACGACAGCAGACTGCTTGGGAGAAACTGCCGTCTGAAATTTTTAATTGTTTTTGGAAAGGATGTTAGGCTCCGACAGGATTTTCTATTCCCACTTTGAGCTCAATTATCTCAATTTCCATGAGAGATATCAAAAG</canonical>
            <polymorphic>CCAGGAATGATGGCGGCTGAAAAATGATCCAGAAGTTAGACAAGTAGAGTCTAAGGCTTCCAATCGAACGGGAAATTCAGTCGACCGAGCTGACCGATCGCTCAACTTGGTCGGCGGTCCCGTGAACCCTTAGTAGAGTCAGACAGAAAAAAAAATCTCACGTGCTGGTGCTGAGGTAGTCGTTGATGGCGCTGGAATCTCTACACATTTCCCATTTTTCGGTGCAAATCCACATCTACACATGCATCGTCCGCGATAGCAGCCAGAGTTTGGAGGACACTGTTTTTGAATGAAGCATAGGGAATTAAGAGGGACCGCCTGGAAATTTAAGGTTCTCTAAATCTTGATTTTAAAAGATATGGAGGTGGTGGTGGTGGCGGCGGCGGATGCCTATGGTCCCCCAGGTTCTAACACCTGCCCACCAGGACAAGCCGGACTCGATGGACTTCCAGGAGCTCCAAGACACACAGGAGCCATCGGAGGAGCTGGACCTAACGGGRAGGAGCCGGAGGATGCAAGACCTGCCCAGCCGGACCGCCAGGACCAGCAGGATCAGCTCGGAAAGCTGGACGCCCAGGAATTCAATGTATTTCAAGAATCCCACCTTCATGCAACTGGTATCCTTTGACAAATTCTCATTCTCACAATCTCTCGAACACGATTGTGATGGATTTTTCAGCGGATTAGTAAGCACATCGACAGCTGGATGGAAGTTTTGCTGACACTGACACTGTCCTTTCATGCATTCCATGCCTTCTCCACCTCCGCACTGAGCGTTTGATATGCAGGCAGAGTTGAGTTGTCCACGTGGAATACACTGATTGTTGGCGTAGAGAGCGTTCGGAGCCATCGCGTTACAAGGACGACGACAGCAGACTGCTTGGGAGAAACTGCCGTCTGAAATTTTTAATTGTTTTTGGAAAGGATGTTAGGCTCCGACAGGATTTTCTATTCCCACTTTGAGCTCAATTATCTCAATTTCCATGAGAGATATCAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTAAAAGATATGGAGGTGGT</pcr_primer_p1>
		<pcr_primer_p2>GGGATTCTTGAAATACATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATTTTAAAAGATATGGAGGTGGTGGTGGTGGCGGCGGCGGATGCCTATGGTCCCCCAGGTTCTAACACCTGCCCACCAGGACAAGCCGGACTCGATGGACTTCCAGGAGCTCCAAGACACACAGGAGCCATCGGAGGAGCTGGACCTAACGGGGAGGAGCCGGAGGATGCAAGACCTGCCCAGCCGGACCGCCAGGACCAGCAGGATCAGCTCGGAAAGCTGGACGCCCAGGAATTCAATGTATTTCAAGAATCCC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTAAAAGATATGGAGGTGGTGGTGGTGGCGGCGGCGGATGCCTATGGTCCCCCAGGTTCTAACACCTGCCCACCAGGACAAGCCGGACTCGATGGACTTCCAGGAGCTCCAAGACACACAGGAGCCATCGGAGGAGCTGGACCTAACGGGRAGGAGCCGGAGGATGCAAGACCTGCCCAGCCGGACCGCCAGGACCAGCAGGATCAGCTCGGAAAGCTGGACGCCCAGGAATTCAATGTATTTCAAGAATCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37246</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>83437</contig_pos>
        <strand></strand>
        <context>GGAGCCGGAG[G/A]ATGCAAGACC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GACACACAGGAGCCATCGGAGGAGCTGGACCTAACGGGGAGGAGCCGGAG</left_flank>
        <right_flank>ATGCAAGACCTGCCCAGCCGGACCGCCAGGACCAGCAGGATCAGCTCGGA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGGCTGAAAAATGATCCAGAAGTTAGACAAGTAGAGTCTAAGGCTTCCAATCGAACGGGAAATTCAGTCGACCGAGCTGACCGATCGCTCAACTTGGTCGGCGGTCCCGTGAACCCTTAGTAGAGTCAGACAGAAAAAAAAATCTCACGTGCTGGTGCTGAGGTAGTCGTTGATGGCGCTGGAATCTCTACACATTTCCCATTTTTCGGTGCAAATCCACATCTACACATGCATCGTCCGCGATAGCAGCCAGAGTTTGGAGGACACTGTTTTTGAATGAAGCATAGGGAATTAAGAGGGACCGCCTGGAAATTTAAGGTTCTCTAAATCTTGATTTTAAAAGATATGGAGGTGGTGGTGGTGGCGGCGGCGGATGCCTATGGTCCCCCAGGTTCTAACACCTGCCCACCAGGACAAGCCGGACTCGATGGACTTCCAGGAGCTCCAAGACACACAGGAGCCATCGGAGGAGCTGGACCTAACGGGGAGGAGCCGGAGGATGCAAGACCTGCCCAGCCGGACCGCCAGGACCAGCAGGATCAGCTCGGAAAGCTGGACGCCCAGGAATTCAATGTATTTCAAGAATCCCACCTTCATGCAACTGGTATCCTTTGACAAATTCTCATTCTCACAATCTCTCGAACACGATTGTGATGGATTTTTCAGCGGATTAGTAAGCACATCGACAGCTGGATGGAAGTTTTGCTGACACTGACACTGTCCTTTCATGCATTCCATGCCTTCTCCACCTCCGCACTGAGCGTTTGATATGCAGGCAGAGTTGAGTTGTCCACGTGGAATACACTGATTGTTGGCGTAGAGAGCGTTCGGAGCCATCGCGTTACAAGGACGACGACAGCAGACTGCTTGGGAGAAACTGCCGTCTGAAATTTTTAATTGTTTTTGGAAAGGATGTTAGGCTCCGACAGGATTTTCTATTCCCACTTTGAGCTCAATTATCTCAATTTCCATGAGAGATATCAAAAGTTTGTCAAGTGA</canonical>
            <polymorphic>GCGGCTGAAAAATGATCCAGAAGTTAGACAAGTAGAGTCTAAGGCTTCCAATCGAACGGGAAATTCAGTCGACCGAGCTGACCGATCGCTCAACTTGGTCGGCGGTCCCGTGAACCCTTAGTAGAGTCAGACAGAAAAAAAAATCTCACGTGCTGGTGCTGAGGTAGTCGTTGATGGCGCTGGAATCTCTACACATTTCCCATTTTTCGGTGCAAATCCACATCTACACATGCATCGTCCGCGATAGCAGCCAGAGTTTGGAGGACACTGTTTTTGAATGAAGCATAGGGAATTAAGAGGGACCGCCTGGAAATTTAAGGTTCTCTAAATCTTGATTTTAAAAGATATGGAGGTGGTGGTGGTGGCGGCGGCGGATGCCTATGGTCCCCCAGGTTCTAACACCTGCCCACCAGGACAAGCCGGACTCGATGGACTTCCAGGAGCTCCAAGACACACAGGAGCCATCGGAGGAGCTGGACCTAACGGGGAGGAGCCGGAGRATGCAAGACCTGCCCAGCCGGACCGCCAGGACCAGCAGGATCAGCTCGGAAAGCTGGACGCCCAGGAATTCAATGTATTTCAAGAATCCCACCTTCATGCAACTGGTATCCTTTGACAAATTCTCATTCTCACAATCTCTCGAACACGATTGTGATGGATTTTTCAGCGGATTAGTAAGCACATCGACAGCTGGATGGAAGTTTTGCTGACACTGACACTGTCCTTTCATGCATTCCATGCCTTCTCCACCTCCGCACTGAGCGTTTGATATGCAGGCAGAGTTGAGTTGTCCACGTGGAATACACTGATTGTTGGCGTAGAGAGCGTTCGGAGCCATCGCGTTACAAGGACGACGACAGCAGACTGCTTGGGAGAAACTGCCGTCTGAAATTTTTAATTGTTTTTGGAAAGGATGTTAGGCTCCGACAGGATTTTCTATTCCCACTTTGAGCTCAATTATCTCAATTTCCATGAGAGATATCAAAAGTTTGTCAAGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTAAAAGATATGGAGGTGGT</pcr_primer_p1>
		<pcr_primer_p2>GGGATTCTTGAAATACATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATTTTAAAAGATATGGAGGTGGTGGTGGTGGCGGCGGCGGATGCCTATGGTCCCCCAGGTTCTAACACCTGCCCACCAGGACAAGCCGGACTCGATGGACTTCCAGGAGCTCCAAGACACACAGGAGCCATCGGAGGAGCTGGACCTAACGGGGAGGAGCCGGAGGATGCAAGACCTGCCCAGCCGGACCGCCAGGACCAGCAGGATCAGCTCGGAAAGCTGGACGCCCAGGAATTCAATGTATTTCAAGAATCCC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTAAAAGATATGGAGGTGGTGGTGGTGGCGGCGGCGGATGCCTATGGTCCCCCAGGTTCTAACACCTGCCCACCAGGACAAGCCGGACTCGATGGACTTCCAGGAGCTCCAAGACACACAGGAGCCATCGGAGGAGCTGGACCTAACGGGGAGGAGCCGGAGRATGCAAGACCTGCCCAGCCGGACCGCCAGGACCAGCAGGATCAGCTCGGAAAGCTGGACGCCCAGGAATTCAATGTATTTCAAGAATCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37247</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>83462</contig_pos>
        <strand></strand>
        <context>CAGCCGGACC[G/A]CCAGGACCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGGACCTAACGGGGAGGAGCCGGAGGATGCAAGACCTGCCCAGCCGGACC</left_flank>
        <right_flank>CCAGGACCAGCAGGATCAGCTCGGAAAGCTGGACGCCCAGGAATTCAATG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGACAAGTAGAGTCTAAGGCTTCCAATCGAACGGGAAATTCAGTCGACCGAGCTGACCGATCGCTCAACTTGGTCGGCGGTCCCGTGAACCCTTAGTAGAGTCAGACAGAAAAAAAAATCTCACGTGCTGGTGCTGAGGTAGTCGTTGATGGCGCTGGAATCTCTACACATTTCCCATTTTTCGGTGCAAATCCACATCTACACATGCATCGTCCGCGATAGCAGCCAGAGTTTGGAGGACACTGTTTTTGAATGAAGCATAGGGAATTAAGAGGGACCGCCTGGAAATTTAAGGTTCTCTAAATCTTGATTTTAAAAGATATGGAGGTGGTGGTGGTGGCGGCGGCGGATGCCTATGGTCCCCCAGGTTCTAACACCTGCCCACCAGGACAAGCCGGACTCGATGGACTTCCAGGAGCTCCAAGACACACAGGAGCCATCGGAGGAGCTGGACCTAACGGGGAGGAGCCGGAGGATGCAAGACCTGCCCAGCCGGACCGCCAGGACCAGCAGGATCAGCTCGGAAAGCTGGACGCCCAGGAATTCAATGTATTTCAAGAATCCCACCTTCATGCAACTGGTATCCTTTGACAAATTCTCATTCTCACAATCTCTCGAACACGATTGTGATGGATTTTTCAGCGGATTAGTAAGCACATCGACAGCTGGATGGAAGTTTTGCTGACACTGACACTGTCCTTTCATGCATTCCATGCCTTCTCCACCTCCGCACTGAGCGTTTGATATGCAGGCAGAGTTGAGTTGTCCACGTGGAATACACTGATTGTTGGCGTAGAGAGCGTTCGGAGCCATCGCGTTACAAGGACGACGACAGCAGACTGCTTGGGAGAAACTGCCGTCTGAAATTTTTAATTGTTTTTGGAAAGGATGTTAGGCTCCGACAGGATTTTCTATTCCCACTTTGAGCTCAATTATCTCAATTTCCATGAGAGATATCAAAAGTTTGTCAAGTGATAAAATTTTTGTCATATTATCATTA</canonical>
            <polymorphic>AGACAAGTAGAGTCTAAGGCTTCCAATCGAACGGGAAATTCAGTCGACCGAGCTGACCGATCGCTCAACTTGGTCGGCGGTCCCGTGAACCCTTAGTAGAGTCAGACAGAAAAAAAAATCTCACGTGCTGGTGCTGAGGTAGTCGTTGATGGCGCTGGAATCTCTACACATTTCCCATTTTTCGGTGCAAATCCACATCTACACATGCATCGTCCGCGATAGCAGCCAGAGTTTGGAGGACACTGTTTTTGAATGAAGCATAGGGAATTAAGAGGGACCGCCTGGAAATTTAAGGTTCTCTAAATCTTGATTTTAAAAGATATGGAGGTGGTGGTGGTGGCGGCGGCGGATGCCTATGGTCCCCCAGGTTCTAACACCTGCCCACCAGGACAAGCCGGACTCGATGGACTTCCAGGAGCTCCAAGACACACAGGAGCCATCGGAGGAGCTGGACCTAACGGGGAGGAGCCGGAGGATGCAAGACCTGCCCAGCCGGACCRCCAGGACCAGCAGGATCAGCTCGGAAAGCTGGACGCCCAGGAATTCAATGTATTTCAAGAATCCCACCTTCATGCAACTGGTATCCTTTGACAAATTCTCATTCTCACAATCTCTCGAACACGATTGTGATGGATTTTTCAGCGGATTAGTAAGCACATCGACAGCTGGATGGAAGTTTTGCTGACACTGACACTGTCCTTTCATGCATTCCATGCCTTCTCCACCTCCGCACTGAGCGTTTGATATGCAGGCAGAGTTGAGTTGTCCACGTGGAATACACTGATTGTTGGCGTAGAGAGCGTTCGGAGCCATCGCGTTACAAGGACGACGACAGCAGACTGCTTGGGAGAAACTGCCGTCTGAAATTTTTAATTGTTTTTGGAAAGGATGTTAGGCTCCGACAGGATTTTCTATTCCCACTTTGAGCTCAATTATCTCAATTTCCATGAGAGATATCAAAAGTTTGTCAAGTGATAAAATTTTTGTCATATTATCATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>272 230 153 138 76 64 61 3 3</canonical_bands>
                <polymorphic_bands>383 272 138 76 64 61 3 3</polymorphic_bands>
            </assay>
            <assay>
                <site>CGGWCCG</site>
                <isoschizomers>
                    <enzyme>CpoI</enzyme>
                    <enzyme>CspI</enzyme>
                    <enzyme>Rsr2I</enzyme>
                    <enzyme>RsrII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTAAAAGATATGGAGGTGGT</pcr_primer_p1>
		<pcr_primer_p2>GGGATTCTTGAAATACATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATTTTAAAAGATATGGAGGTGGTGGTGGTGGCGGCGGCGGATGCCTATGGTCCCCCAGGTTCTAACACCTGCCCACCAGGACAAGCCGGACTCGATGGACTTCCAGGAGCTCCAAGACACACAGGAGCCATCGGAGGAGCTGGACCTAACGGGGAGGAGCCGGAGGATGCAAGACCTGCCCAGCCGGACCGCCAGGACCAGCAGGATCAGCTCGGAAAGCTGGACGCCCAGGAATTCAATGTATTTCAAGAATCCC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTAAAAGATATGGAGGTGGTGGTGGTGGCGGCGGCGGATGCCTATGGTCCCCCAGGTTCTAACACCTGCCCACCAGGACAAGCCGGACTCGATGGACTTCCAGGAGCTCCAAGACACACAGGAGCCATCGGAGGAGCTGGACCTAACGGGGAGGAGCCGGAGGATGCAAGACCTGCCCAGCCGGACCRCCAGGACCAGCAGGATCAGCTCGGAAAGCTGGACGCCCAGGAATTCAATGTATTTCAAGAATCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37248</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>85680</contig_pos>
        <strand></strand>
        <context>tcagccctgt[A/G]ggttccctat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTTAGTGAGTTTTAGAATAATTTTGAAAATTTCGATTCTCAGCCCTGT</left_flank>
        <right_flank>GGTTCCCTATAAGCTAGAAGACCCAAGACACCATAGACATAAAGCGCTCG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCTGAAATCTGGAAACTGGAAAATGGGAACTTTCAGTTATGTGTCAAAAAGGCGATTTTCTCCCTAGCTTTTGCGAGATATTTATTGCCATATTCGTTTCCCAACTGTGCAAATCTCAAAATCATCAAAATAATGTTCAGTGCAATCTCAAGCTCCAATTTTCTGTTTGGAAAGTGATTCAGTTAATTTTTGGAAAAATTGATTTTTTTTTGAATATACCCTCAGAAAGTTTTAGAAGTATCTAAAAATGATGCATGTAGAACTAAATACATTTTAACCCACATTTCTAGCGGGCCACAGGATCGAAGTTGAAGTGATTCTCGAAAAAAAAAGCAAAATTTCATTCTTTAATTTTGAAGATTTGATTTTTTTTTAATTTTGAAGATTTTTATTTTCTGTAGGAAACACATAGATAGTCCCAGAAAACGTTTTGCAGTATTTCATGAAGTTTTAGTGAGTTTTAGAATAATTTTGAAAATTTCGATTCTCAGCCCTGTAGGTTCCCTATAAGCTAGAAGACCCAAGACACCATAGACATAAAGCGCTCGGTAGTTCATGACTACATACCACACACCACTATAGCAGTCCCATGTCCCTTTGAGTTATTCAAGTAAATGTCCGAGACGGACACACAGACACACACACAGAAAAGTTTCCTTAGCAAGAAACCAGTCGGTTTAAGTCCCTATCGGGGGCTCAACCTTTTGGCTTTCGTTCACTGTATTTTACAATTAAATTTCTAAAGTCTAGATTTTCCACTTTTCCGAGTGCCTGAAACTTCCAAGTATTTCGATTTTTAAATTTTGGATGTTACTAATATGGGAATTTCTAGATAAAGTAATTTCTCCAATAGAAGCACACATCTATTTGATGCCCACCTCTGATAAAACAGACGTACTTTTTTTTTCATTTTTCTGATAATTTCTGTTAAGACTTGTCGCTTTTTTGAGAAAAAAAGATATCCGATTTTCTGAATTTCCGAGTTTCTACATGACAGA</canonical>
            <polymorphic>ACTCTGAAATCTGGAAACTGGAAAATGGGAACTTTCAGTTATGTGTCAAAAAGGCGATTTTCTCCCTAGCTTTTGCGAGATATTTATTGCCATATTCGTTTCCCAACTGTGCAAATCTCAAAATCATCAAAATAATGTTCAGTGCAATCTCAAGCTCCAATTTTCTGTTTGGAAAGTGATTCAGTTAATTTTTGGAAAAATTGATTTTTTTTTGAATATACCCTCAGAAAGTTTTAGAAGTATCTAAAAATGATGCATGTAGAACTAAATACATTTTAACCCACATTTCTAGCGGGCCACAGGATCGAAGTTGAAGTGATTCTCGAAAAAAAAAGCAAAATTTCATTCTTTAATTTTGAAGATTTGATTTTTTTTTAATTTTGAAGATTTTTATTTTCTGTAGGAAACACATAGATAGTCCCAGAAAACGTTTTGCAGTATTTCATGAAGTTTTAGTGAGTTTTAGAATAATTTTGAAAATTTCGATTCTCAGCCCTGTRGGTTCCCTATAAGCTAGAAGACCCAAGACACCATAGACATAAAGCGCTCGGTAGTTCATGACTACATACCACACACCACTATAGCAGTCCCATGTCCCTTTGAGTTATTCAAGTAAATGTCCGAGACGGACACACAGACACACACACAGAAAAGTTTCCTTAGCAAGAAACCAGTCGGTTTAAGTCCCTATCGGGGGCTCAACCTTTTGGCTTTCGTTCACTGTATTTTACAATTAAATTTCTAAAGTCTAGATTTTCCACTTTTCCGAGTGCCTGAAACTTCCAAGTATTTCGATTTTTAAATTTTGGATGTTACTAATATGGGAATTTCTAGATAAAGTAATTTCTCCAATAGAAGCACACATCTATTTGATGCCCACCTCTGATAAAACAGACGTACTTTTTTTTTCATTTTTCTGATAATTTCTGTTAAGACTTGTCGCTTTTTTGAGAAAAAAAGATATCCGATTTTCTGAATTTCCGAGTTTCTACATGACAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>421 398 98 83</canonical_bands>
                <polymorphic_bands>421 398 181</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTGCAAATCTCAAAATCAT</pcr_primer_p1>
		<pcr_primer_p2>CCAAAATTTAAAAATCGAAATACT</pcr_primer_p2>
		<pcr_amplicon_size>703</pcr_amplicon_size>
		<canonical_amplicon>CTGTGCAAATCTCAAAATCATCAAAATAATGTTCAGTGCAATCTCAAGCTCCAATTTTCTGTTTGGAAAGTGATTCAGTTAATTTTTGGAAAAATTGATTTTTTTTTGAATATACCCTCAGAAAGTTTTAGAAGTATCTAAAAATGATGCATGTAGAACTAAATACATTTTAACCCACATTTCTAGCGGGCCACAGGATCGAAGTTGAAGTGATTCTCGAAAAAAAAAGCAAAATTTCATTCTTTAATTTTGAAGATTTGATTTTTTTTTAATTTTGAAGATTTTTATTTTCTGTAGGAAACACATAGATAGTCCCAGAAAACGTTTTGCAGTATTTCATGAAGTTTTAGTGAGTTTTAGAATAATTTTGAAAATTTCGATTCTCAGCCCTGTAGGTTCCCTATAAGCTAGAAGACCCAAGACACCATAGACATAAAGCGCTCGGTAGTTCATGACTACATACCACACACCACTATAGCAGTCCCATGTCCCTTTGAGTTATTCAAGTAAATGTCCGAGACGGACACACAGACACACACACAGAAAAGTTTCCTTAGCAAGAAACCAGTCGGTTTAAGTCCCTATCGGGGGCTCAACCTTTTGGCTTTCGTTCACTGTATTTTACAATTAAATTTCTAAAGTCTAGATTTTCCACTTTTCCGAGTGCCTGAAACTTCCAAGTATTTCGATTTTTAAATTTTGG</canonical_amplicon>
		<polymorphic_amplicon>CTGTGCAAATCTCAAAATCATCAAAATAATGTTCAGTGCAATCTCAAGCTCCAATTTTCTGTTTGGAAAGTGATTCAGTTAATTTTTGGAAAAATTGATTTTTTTTTGAATATACCCTCAGAAAGTTTTAGAAGTATCTAAAAATGATGCATGTAGAACTAAATACATTTTAACCCACATTTCTAGCGGGCCACAGGATCGAAGTTGAAGTGATTCTCGAAAAAAAAAGCAAAATTTCATTCTTTAATTTTGAAGATTTGATTTTTTTTTAATTTTGAAGATTTTTATTTTCTGTAGGAAACACATAGATAGTCCCAGAAAACGTTTTGCAGTATTTCATGAAGTTTTAGTGAGTTTTAGAATAATTTTGAAAATTTCGATTCTCAGCCCTGTRGGTTCCCTATAAGCTAGAAGACCCAAGACACCATAGACATAAAGCGCTCGGTAGTTCATGACTACATACCACACACCACTATAGCAGTCCCATGTCCCTTTGAGTTATTCAAGTAAATGTCCGAGACGGACACACAGACACACACACAGAAAAGTTTCCTTAGCAAGAAACCAGTCGGTTTAAGTCCCTATCGGGGGCTCAACCTTTTGGCTTTCGTTCACTGTATTTTACAATTAAATTTCTAAAGTCTAGATTTTCCACTTTTCCGAGTGCCTGAAACTTCCAAGTATTTCGATTTTTAAATTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37249</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>85765</contig_pos>
        <strand></strand>
        <context>accactatag[C/G]agtcccatgt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGACATAAAGCGCTCGGTAGTTCATGACTACATACCACACACCACTATAG</left_flank>
        <right_flank>AGTCCCATGTCCCTTTGAGTTATTCAAGTAAATGTCCGAGACGGACACAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGCCATATTCGTTTCCCAACTGTGCAAATCTCAAAATCATCAAAATAATGTTCAGTGCAATCTCAAGCTCCAATTTTCTGTTTGGAAAGTGATTCAGTTAATTTTTGGAAAAATTGATTTTTTTTTGAATATACCCTCAGAAAGTTTTAGAAGTATCTAAAAATGATGCATGTAGAACTAAATACATTTTAACCCACATTTCTAGCGGGCCACAGGATCGAAGTTGAAGTGATTCTCGAAAAAAAAAGCAAAATTTCATTCTTTAATTTTGAAGATTTGATTTTTTTTTAATTTTGAAGATTTTTATTTTCTGTAGGAAACACATAGATAGTCCCAGAAAACGTTTTGCAGTATTTCATGAAGTTTTAGTGAGTTTTAGAATAATTTTGAAAATTTCGATTCTCAGCCCTGTAGGTTCCCTATAAGCTAGAAGACCCAAGACACCATAGACATAAAGCGCTCGGTAGTTCATGACTACATACCACACACCACTATAGCAGTCCCATGTCCCTTTGAGTTATTCAAGTAAATGTCCGAGACGGACACACAGACACACACACAGAAAAGTTTCCTTAGCAAGAAACCAGTCGGTTTAAGTCCCTATCGGGGGCTCAACCTTTTGGCTTTCGTTCACTGTATTTTACAATTAAATTTCTAAAGTCTAGATTTTCCACTTTTCCGAGTGCCTGAAACTTCCAAGTATTTCGATTTTTAAATTTTGGATGTTACTAATATGGGAATTTCTAGATAAAGTAATTTCTCCAATAGAAGCACACATCTATTTGATGCCCACCTCTGATAAAACAGACGTACTTTTTTTTTCATTTTTCTGATAATTTCTGTTAAGACTTGTCGCTTTTTTGAGAAAAAAAGATATCCGATTTTCTGAATTTCCGAGTTTCTACATGACAGAATACATGTTTCTTGAAAAGGGAATACAATTGTTTGATTTTCTAAAGTCTCGAATTTCTAACCTAAAATCCTTAATTGTCGAATTT</canonical>
            <polymorphic>ATTGCCATATTCGTTTCCCAACTGTGCAAATCTCAAAATCATCAAAATAATGTTCAGTGCAATCTCAAGCTCCAATTTTCTGTTTGGAAAGTGATTCAGTTAATTTTTGGAAAAATTGATTTTTTTTTGAATATACCCTCAGAAAGTTTTAGAAGTATCTAAAAATGATGCATGTAGAACTAAATACATTTTAACCCACATTTCTAGCGGGCCACAGGATCGAAGTTGAAGTGATTCTCGAAAAAAAAAGCAAAATTTCATTCTTTAATTTTGAAGATTTGATTTTTTTTTAATTTTGAAGATTTTTATTTTCTGTAGGAAACACATAGATAGTCCCAGAAAACGTTTTGCAGTATTTCATGAAGTTTTAGTGAGTTTTAGAATAATTTTGAAAATTTCGATTCTCAGCCCTGTAGGTTCCCTATAAGCTAGAAGACCCAAGACACCATAGACATAAAGCGCTCGGTAGTTCATGACTACATACCACACACCACTATAGSAGTCCCATGTCCCTTTGAGTTATTCAAGTAAATGTCCGAGACGGACACACAGACACACACACAGAAAAGTTTCCTTAGCAAGAAACCAGTCGGTTTAAGTCCCTATCGGGGGCTCAACCTTTTGGCTTTCGTTCACTGTATTTTACAATTAAATTTCTAAAGTCTAGATTTTCCACTTTTCCGAGTGCCTGAAACTTCCAAGTATTTCGATTTTTAAATTTTGGATGTTACTAATATGGGAATTTCTAGATAAAGTAATTTCTCCAATAGAAGCACACATCTATTTGATGCCCACCTCTGATAAAACAGACGTACTTTTTTTTTCATTTTTCTGATAATTTCTGTTAAGACTTGTCGCTTTTTTGAGAAAAAAAGATATCCGATTTTCTGAATTTCCGAGTTTCTACATGACAGAATACATGTTTCTTGAAAAGGGAATACAATTGTTTGATTTTCTAAAGTCTCGAATTTCTAACCTAAAATCCTTAATTGTCGAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTGCAAATCTCAAAATCAT</pcr_primer_p1>
		<pcr_primer_p2>CCAAAATTTAAAAATCGAAATACT</pcr_primer_p2>
		<pcr_amplicon_size>703</pcr_amplicon_size>
		<canonical_amplicon>CTGTGCAAATCTCAAAATCATCAAAATAATGTTCAGTGCAATCTCAAGCTCCAATTTTCTGTTTGGAAAGTGATTCAGTTAATTTTTGGAAAAATTGATTTTTTTTTGAATATACCCTCAGAAAGTTTTAGAAGTATCTAAAAATGATGCATGTAGAACTAAATACATTTTAACCCACATTTCTAGCGGGCCACAGGATCGAAGTTGAAGTGATTCTCGAAAAAAAAAGCAAAATTTCATTCTTTAATTTTGAAGATTTGATTTTTTTTTAATTTTGAAGATTTTTATTTTCTGTAGGAAACACATAGATAGTCCCAGAAAACGTTTTGCAGTATTTCATGAAGTTTTAGTGAGTTTTAGAATAATTTTGAAAATTTCGATTCTCAGCCCTGTAGGTTCCCTATAAGCTAGAAGACCCAAGACACCATAGACATAAAGCGCTCGGTAGTTCATGACTACATACCACACACCACTATAGCAGTCCCATGTCCCTTTGAGTTATTCAAGTAAATGTCCGAGACGGACACACAGACACACACACAGAAAAGTTTCCTTAGCAAGAAACCAGTCGGTTTAAGTCCCTATCGGGGGCTCAACCTTTTGGCTTTCGTTCACTGTATTTTACAATTAAATTTCTAAAGTCTAGATTTTCCACTTTTCCGAGTGCCTGAAACTTCCAAGTATTTCGATTTTTAAATTTTGG</canonical_amplicon>
		<polymorphic_amplicon>CTGTGCAAATCTCAAAATCATCAAAATAATGTTCAGTGCAATCTCAAGCTCCAATTTTCTGTTTGGAAAGTGATTCAGTTAATTTTTGGAAAAATTGATTTTTTTTTGAATATACCCTCAGAAAGTTTTAGAAGTATCTAAAAATGATGCATGTAGAACTAAATACATTTTAACCCACATTTCTAGCGGGCCACAGGATCGAAGTTGAAGTGATTCTCGAAAAAAAAAGCAAAATTTCATTCTTTAATTTTGAAGATTTGATTTTTTTTTAATTTTGAAGATTTTTATTTTCTGTAGGAAACACATAGATAGTCCCAGAAAACGTTTTGCAGTATTTCATGAAGTTTTAGTGAGTTTTAGAATAATTTTGAAAATTTCGATTCTCAGCCCTGTAGGTTCCCTATAAGCTAGAAGACCCAAGACACCATAGACATAAAGCGCTCGGTAGTTCATGACTACATACCACACACCACTATAGSAGTCCCATGTCCCTTTGAGTTATTCAAGTAAATGTCCGAGACGGACACACAGACACACACACAGAAAAGTTTCCTTAGCAAGAAACCAGTCGGTTTAAGTCCCTATCGGGGGCTCAACCTTTTGGCTTTCGTTCACTGTATTTTACAATTAAATTTCTAAAGTCTAGATTTTCCACTTTTCCGAGTGCCTGAAACTTCCAAGTATTTCGATTTTTAAATTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37262</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>104198</contig_pos>
        <strand>+</strand>
        <context>CGTTTGATAA[A/C]GTCCCAACAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAATGCGGAACATGCTCTGAAAATTTACAAATTAAAAAGCGTTTGATAA</left_flank>
        <right_flank>GTCCCAACATCAACAATTTTTTTTCTATTTTTATTAACAAATGTTGAAAC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGCCCAGAAGCCGAAAATGTCTAGTTGACACTTTGAACATTCATACCATACGCAGAATTGTATTTTAATGAGGTATCACTTGTTTAAAAATTGGTAAAAGACTATTTTGTCATGTCCCCAATATTATATTTCATATTAATGATCGTTTCCTATTTTTTCCAAATTTTTGAAAAAATGATCCAAAAATCCGACATTTTCTAAAAAATGAATTTTTTCGCTAAAATGTTGTCTTATTTTTTTCAAGATGAAAACAATTTTGCATCATTTTTCTCGGACGATTAGCTAAATTTTACAGAAAAAATTGACGTTTTAGCCATATTTTGAAGAAAGTTATAGTTGAAAAAACAAAAGTTCATATCCTTTTGTCCGGTACTGTACCTGTTCCCATTTTACAGTCCCCATTTCTTCTGCAGCTGTATTCCTGGTTTCTAGACACTGACCGACGAAAAAATGCGGAACATGCTCTGAAAATTTACAAATTAAAAAGCGTTTGATAAAGTCCCAACATCAACAATTTTTTTTCTATTTTTATTAACAAATGTTGAAACAGCAAATTAATTCATTAACCAACCTACACACACTGGCTCCAAAATGAATACCACTAGAATTGGAATTGCAGACTTCACAGTTGAAACTCATTGTTCTGAGACAGTCGAACAGACAAGAAATGTCACCATTCCTTCTCTTGTATTTGCCGTTTCCTTGAGTACAAATAGACTAAAAGACCAGACTACAGGATACAAATTTGGAGAGTTTGGGTAAAAATAGTAGACGCAGAGAAATTTGAAAGAATGGGTGGTCAACTGGAAGAGACTACATTTGTAAAAGGATTAGGATTAAGGTACCGTAAAACGTATAGTATAGGGTCCGATCTTTTTATTGTTCCAAGGTACCTCGAAGGGCCTTTCTATTACAAGGGTTTTTCAAGTAGGGGGGAGGAAGGGCTTCTATTTTTCCGAGCCCTTCTTTTTTTAGATTTAGGTTTCTTCTTCCTTCTT</canonical>
            <polymorphic>AAAGCCCAGAAGCCGAAAATGTCTAGTTGACACTTTGAACATTCATACCATACGCAGAATTGTATTTTAATGAGGTATCACTTGTTTAAAAATTGGTAAAAGACTATTTTGTCATGTCCCCAATATTATATTTCATATTAATGATCGTTTCCTATTTTTTCCAAATTTTTGAAAAAATGATCCAAAAATCCGACATTTTCTAAAAAATGAATTTTTTCGCTAAAATGTTGTCTTATTTTTTTCAAGATGAAAACAATTTTGCATCATTTTTCTCGGACGATTAGCTAAATTTTACAGAAAAAATTGACGTTTTAGCCATATTTTGAAGAAAGTTATAGTTGAAAAAACAAAAGTTCATATCCTTTTGTCCGGTACTGTACCTGTTCCCATTTTACAGTCCCCATTTCTTCTGCAGCTGTATTCCTGGTTTCTAGACACTGACCGACGAAAAAATGCGGAACATGCTCTGAAAATTTACAAATTAAAAAGCGTTTGATAAMGTCCCAACATCAACAATTTTTTTTCTATTTTTATTAACAAATGTTGAAACAGCAAATTAATTCATTAACCAACCTACACACACTGGCTCCAAAATGAATACCACTAGAATTGGAATTGCAGACTTCACAGTTGAAACTCATTGTTCTGAGACAGTCGAACAGACAAGAAATGTCACCATTCCTTCTCTTGTATTTGCCGTTTCCTTGAGTACAAATAGACTAAAAGACCAGACTACAGGATACAAATTTGGAGAGTTTGGGTAAAAATAGTAGACGCAGAGAAATTTGAAAGAATGGGTGGTCAACTGGAAGAGACTACATTTGTAAAAGGATTAGGATTAAGGTACCGTAAAACGTATAGTATAGGGTCCGATCTTTTTATTGTTCCAAGGTACCTCGAAGGGCCTTTCTATTACAAGGGTTTTTCAAGTAGGGGGGAGGAAGGGCTTCTATTTTTCCGAGCCCTTCTTTTTTTAGATTTAGGTTTCTTCTTCCTTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTACAGTCCCCATTTCTTCT</pcr_primer_p1>
		<pcr_primer_p2>TGAGTTTCAACTGTGAAGTCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTACAGTCCCCATTTCTTCTGCAGCTGTATTCCTGGTTTCTAGACACTGACCGACGAAAAAATGCGGAACATGCTCTGAAAATTTACAAATTAAAAAGCGTTTGATAAAGTCCCAACATCAACAATTTTTTTTCTATTTTTATTAACAAATGTTGAAACAGCAAATTAATTCATTAACCAACCTACACACACTGGCTCCAAAATGAATACCACTAGAATTGGAATTGCAGACTTCACAGTTGAAACTCA</canonical_amplicon>
		<polymorphic_amplicon>TTTACAGTCCCCATTTCTTCTGCAGCTGTATTCCTGGTTTCTAGACACTGACCGACGAAAAAATGCGGAACATGCTCTGAAAATTTACAAATTAAAAAGCGTTTGATAAMGTCCCAACATCAACAATTTTTTTTCTATTTTTATTAACAAATGTTGAAACAGCAAATTAATTCATTAACCAACCTACACACACTGGCTCCAAAATGAATACCACTAGAATTGGAATTGCAGACTTCACAGTTGAAACTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37263</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>104215</contig_pos>
        <strand>+</strand>
        <context>ACATCAACAA[A/T]TTTTTTTCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGAAAATTTACAAATTAAAAAGCGTTTGATAAAGTCCCAACATCAACAA</left_flank>
        <right_flank>TTTTTTTCTATTTTTATTAACAAATGTTGAAACAGCAAATTAATTCATTA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGTCTAGTTGACACTTTGAACATTCATACCATACGCAGAATTGTATTTTAATGAGGTATCACTTGTTTAAAAATTGGTAAAAGACTATTTTGTCATGTCCCCAATATTATATTTCATATTAATGATCGTTTCCTATTTTTTCCAAATTTTTGAAAAAATGATCCAAAAATCCGACATTTTCTAAAAAATGAATTTTTTCGCTAAAATGTTGTCTTATTTTTTTCAAGATGAAAACAATTTTGCATCATTTTTCTCGGACGATTAGCTAAATTTTACAGAAAAAATTGACGTTTTAGCCATATTTTGAAGAAAGTTATAGTTGAAAAAACAAAAGTTCATATCCTTTTGTCCGGTACTGTACCTGTTCCCATTTTACAGTCCCCATTTCTTCTGCAGCTGTATTCCTGGTTTCTAGACACTGACCGACGAAAAAATGCGGAACATGCTCTGAAAATTTACAAATTAAAAAGCGTTTGATAAAGTCCCAACATCAACAATTTTTTTTCTATTTTTATTAACAAATGTTGAAACAGCAAATTAATTCATTAACCAACCTACACACACTGGCTCCAAAATGAATACCACTAGAATTGGAATTGCAGACTTCACAGTTGAAACTCATTGTTCTGAGACAGTCGAACAGACAAGAAATGTCACCATTCCTTCTCTTGTATTTGCCGTTTCCTTGAGTACAAATAGACTAAAAGACCAGACTACAGGATACAAATTTGGAGAGTTTGGGTAAAAATAGTAGACGCAGAGAAATTTGAAAGAATGGGTGGTCAACTGGAAGAGACTACATTTGTAAAAGGATTAGGATTAAGGTACCGTAAAACGTATAGTATAGGGTCCGATCTTTTTATTGTTCCAAGGTACCTCGAAGGGCCTTTCTATTACAAGGGTTTTTCAAGTAGGGGGGAGGAAGGGCTTCTATTTTTCCGAGCCCTTCTTTTTTTAGATTTAGGTTTCTTCTTCCTTCTTAAAAAGCATATCTATTA</canonical>
            <polymorphic>AATGTCTAGTTGACACTTTGAACATTCATACCATACGCAGAATTGTATTTTAATGAGGTATCACTTGTTTAAAAATTGGTAAAAGACTATTTTGTCATGTCCCCAATATTATATTTCATATTAATGATCGTTTCCTATTTTTTCCAAATTTTTGAAAAAATGATCCAAAAATCCGACATTTTCTAAAAAATGAATTTTTTCGCTAAAATGTTGTCTTATTTTTTTCAAGATGAAAACAATTTTGCATCATTTTTCTCGGACGATTAGCTAAATTTTACAGAAAAAATTGACGTTTTAGCCATATTTTGAAGAAAGTTATAGTTGAAAAAACAAAAGTTCATATCCTTTTGTCCGGTACTGTACCTGTTCCCATTTTACAGTCCCCATTTCTTCTGCAGCTGTATTCCTGGTTTCTAGACACTGACCGACGAAAAAATGCGGAACATGCTCTGAAAATTTACAAATTAAAAAGCGTTTGATAAAGTCCCAACATCAACAAWTTTTTTTCTATTTTTATTAACAAATGTTGAAACAGCAAATTAATTCATTAACCAACCTACACACACTGGCTCCAAAATGAATACCACTAGAATTGGAATTGCAGACTTCACAGTTGAAACTCATTGTTCTGAGACAGTCGAACAGACAAGAAATGTCACCATTCCTTCTCTTGTATTTGCCGTTTCCTTGAGTACAAATAGACTAAAAGACCAGACTACAGGATACAAATTTGGAGAGTTTGGGTAAAAATAGTAGACGCAGAGAAATTTGAAAGAATGGGTGGTCAACTGGAAGAGACTACATTTGTAAAAGGATTAGGATTAAGGTACCGTAAAACGTATAGTATAGGGTCCGATCTTTTTATTGTTCCAAGGTACCTCGAAGGGCCTTTCTATTACAAGGGTTTTTCAAGTAGGGGGGAGGAAGGGCTTCTATTTTTCCGAGCCCTTCTTTTTTTAGATTTAGGTTTCTTCTTCCTTCTTAAAAAGCATATCTATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>235 170 131 73 49 46 45 40 40 38 35 33 33 14 8 6 4</canonical_bands>
                <polymorphic_bands>235 170 131 75 73 49 46 45 40 38 33 33 14 8 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTACAGTCCCCATTTCTTCT</pcr_primer_p1>
		<pcr_primer_p2>TGAGTTTCAACTGTGAAGTCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTACAGTCCCCATTTCTTCTGCAGCTGTATTCCTGGTTTCTAGACACTGACCGACGAAAAAATGCGGAACATGCTCTGAAAATTTACAAATTAAAAAGCGTTTGATAAAGTCCCAACATCAACAATTTTTTTTCTATTTTTATTAACAAATGTTGAAACAGCAAATTAATTCATTAACCAACCTACACACACTGGCTCCAAAATGAATACCACTAGAATTGGAATTGCAGACTTCACAGTTGAAACTCA</canonical_amplicon>
		<polymorphic_amplicon>TTTACAGTCCCCATTTCTTCTGCAGCTGTATTCCTGGTTTCTAGACACTGACCGACGAAAAAATGCGGAACATGCTCTGAAAATTTACAAATTAAAAAGCGTTTGATAAAGTCCCAACATCAACAAWTTTTTTTCTATTTTTATTAACAAATGTTGAAACAGCAAATTAATTCATTAACCAACCTACACACACTGGCTCCAAAATGAATACCACTAGAATTGGAATTGCAGACTTCACAGTTGAAACTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37264</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>137371</contig_pos>
        <strand></strand>
        <context>TTTCATTTGC[T/C]TGAATGTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCTTTTCCCGCCAGTCACACGATAACTCAATTTAGCATCTTTTCATTTGC</left_flank>
        <right_flank>TGAATGTTTGAACCCATGGTGTTTGACCTAATGTCTATAACGCAACAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTACACTGTCCAATTTCAATTTGTCCACCTATTTTTTCGTTCAAGATCATTTTCAGATCCATCAAATAAACATTTTCTATAACTTTGACTAATTTCTGGAATATTCATAATTTTTGTACAGAAAATTCAGATATCTGGTGAAACTGAAATAAAGGCTACATGGTACATGAAATCATCAATTCGAGCTGTTTCTATACATGCGAAAAAATTCTTCAAATTTCAACCGTCTTATATCAAAAGTCTGTGAACTGATAAAATATTAATCATAATATCAGCAATATTTTATCAGTGTGCAGATTTTTTATATTTCCCATGGGAACCGAGATAATTGAACAAGAATCAGGTAAACCATCAATTGAATGTTCCACATTCCTGATTCTTTCCCCAGTTTTGTTCTTTGTATCAGCTTTGATATCTTTTCTTGCACACGACACAAATACCTCACTTTCCTTTTCCCGCCAGTCACACGATAACTCAATTTAGCATCTTTTCATTTGCTTGAATGTTTGAACCCATGGTGTTTGACCTAATGTCTATAACGCAACAATTTCACAAGAAAACAAGCCAATTCACTTCATTAAATCACACAAAATATTTGGTTTTTGAGATCATCATACATAGATCCAATTAGGTATTAATTATTCATTCTCCTCCCTGACGAAGCGTGTGAATCGGTTCAAAGTGCTTTCGGAGACTTGTGGATCGATGGTTCTGTAAAAAGTTTCATGTTTTGTAATTGAGACTACAAACTACAAACCTGAACGCCGAAAGAAGTCGTTGGCGAAAGAAGTTGGCCTCGTGACCGCGCGAGTATTGGTGCTCGGGCAATTGAGCTTCGACACCTGCAACACTTCACCGTGGGAAAGTTTGAATGTGGGAATCCCAATGACAGTATATAAATCTTGCCCCACTGTTTTCGATTTCATTTTTCTTTTCGAATTTTTGATCGAAAAGGCATTTTACTATACAAAACACTCATTTGATTTGGTATCACACACA</canonical>
            <polymorphic>ACTACACTGTCCAATTTCAATTTGTCCACCTATTTTTTCGTTCAAGATCATTTTCAGATCCATCAAATAAACATTTTCTATAACTTTGACTAATTTCTGGAATATTCATAATTTTTGTACAGAAAATTCAGATATCTGGTGAAACTGAAATAAAGGCTACATGGTACATGAAATCATCAATTCGAGCTGTTTCTATACATGCGAAAAAATTCTTCAAATTTCAACCGTCTTATATCAAAAGTCTGTGAACTGATAAAATATTAATCATAATATCAGCAATATTTTATCAGTGTGCAGATTTTTTATATTTCCCATGGGAACCGAGATAATTGAACAAGAATCAGGTAAACCATCAATTGAATGTTCCACATTCCTGATTCTTTCCCCAGTTTTGTTCTTTGTATCAGCTTTGATATCTTTTCTTGCACACGACACAAATACCTCACTTTCCTTTTCCCGCCAGTCACACGATAACTCAATTTAGCATCTTTTCATTTGCYTGAATGTTTGAACCCATGGTGTTTGACCTAATGTCTATAACGCAACAATTTCACAAGAAAACAAGCCAATTCACTTCATTAAATCACACAAAATATTTGGTTTTTGAGATCATCATACATAGATCCAATTAGGTATTAATTATTCATTCTCCTCCCTGACGAAGCGTGTGAATCGGTTCAAAGTGCTTTCGGAGACTTGTGGATCGATGGTTCTGTAAAAAGTTTCATGTTTTGTAATTGAGACTACAAACTACAAACCTGAACGCCGAAAGAAGTCGTTGGCGAAAGAAGTTGGCCTCGTGACCGCGCGAGTATTGGTGCTCGGGCAATTGAGCTTCGACACCTGCAACACTTCACCGTGGGAAAGTTTGAATGTGGGAATCCCAATGACAGTATATAAATCTTGCCCCACTGTTTTCGATTTCATTTTTCTTTTCGAATTTTTGATCGAAAAGGCATTTTACTATACAAAACACTCATTTGATTTGGTATCACACACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTGATATCTTTTCTTGCACAC</pcr_primer_p1>
		<pcr_primer_p2>TCAGGGAGGAGAATGAATAAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTTTGATATCTTTTCTTGCACACGACACAAATACCTCACTTTCCTTTTCCCGCCAGTCACACGATAACTCAATTTAGCATCTTTTCATTTGCTTGAATGTTTGAACCCATGGTGTTTGACCTAATGTCTATAACGCAACAATTTCACAAGAAAACAAGCCAATTCACTTCATTAAATCACACAAAATATTTGGTTTTTGAGATCATCATACATAGATCCAATTAGGTATTAATTATTCATTCTCCTCCCTGA</canonical_amplicon>
		<polymorphic_amplicon>CTTTGATATCTTTTCTTGCACACGACACAAATACCTCACTTTCCTTTTCCCGCCAGTCACACGATAACTCAATTTAGCATCTTTTCATTTGCYTGAATGTTTGAACCCATGGTGTTTGACCTAATGTCTATAACGCAACAATTTCACAAGAAAACAAGCCAATTCACTTCATTAAATCACACAAAATATTTGGTTTTTGAGATCATCATACATAGATCCAATTAGGTATTAATTATTCATTCTCCTCCCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37265</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>138472</contig_pos>
        <strand></strand>
        <context>ATGctctaat[A/G]gaagcccacc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGACGTATAGCATGGGCTTCTATTAGGACATTTACGGTTAATGCTCTAAT</left_flank>
        <right_flank>GAAGCCCACCTTTTGAGCGCAATTATATCATTATCTCGGTTTCCATAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACGGTACCGGCTACTATAAAATTTAACATCAAGCATGGATTCCCGAAACTTCCAAAGAGCTTTTGGCTTTCGTTTGAAGAGACAATGTCCAGAAATGCGGTGAGTTGGGTTTTCAGCATAGAAACTTTTGGATAACATTGGTTTAAGCTTGAGTCATGTTGATTTTTAGAACAACTCATTGCTTGGGGTCTATGAAAACAATTTAAATTTTGAACATGGCTCACAGCATCTCCGAAAAAAGCATCATTTCAAGTTTTTAAAACCTTCAAGCTAGTTAAAATACCGTCAGGGCTCTAATATGAGCCCACCAACTATACATTAACGAGCTCAATTATCTCAATTAATATGCGAGATAGTAAAAATTTGTAAACAGACAAACCATTTTTGATTTCATGATGAACAATTTGTTAGCTGACAGATTTTTGATAGCTCTGATAGAAACCGAGTGGACGTATAGCATGGGCTTCTATTAGGACATTTACGGTTAATGCTCTAATAGAAGCCCACCTTTTGAGCGCAATTATATCATTATCTCGGTTTCCATAAAAGCTATCTAAACATTGTTAACTAATAAATTGTTCATCATTTTATCACCAATATTAAATCAGTTGACAAATTTTTGATATCTTCGGTAAGAGCCGAAATACTTGAGCTCAAAGTACACCTACCGCAACCTTAATAGAACACTACCCGAACTTTCAACTTTGAACCCATATATCCCGGTTCCTATAAAAGCTATCTAAAATTTTAGACTGATAAAATATCGGTGGTAATATGATAAACAATTTACTAGTTGAAAATGTTTTGATATCCCTCATTAGAAACCGAGACAATTGAGCTCAAAATACAGTAGTTCAATTCGCCTTACCATCGACAGTCCATGCTCCAACAACTCCCAAAATGACAAAGAACAAAACGATGAGTCTCGCGATCATCTTCGAAAAATTAGTCCAAATCTGAAAATATCTCAAAGTCCGAAAATTACAAATCCATTCATA</canonical>
            <polymorphic>CTACGGTACCGGCTACTATAAAATTTAACATCAAGCATGGATTCCCGAAACTTCCAAAGAGCTTTTGGCTTTCGTTTGAAGAGACAATGTCCAGAAATGCGGTGAGTTGGGTTTTCAGCATAGAAACTTTTGGATAACATTGGTTTAAGCTTGAGTCATGTTGATTTTTAGAACAACTCATTGCTTGGGGTCTATGAAAACAATTTAAATTTTGAACATGGCTCACAGCATCTCCGAAAAAAGCATCATTTCAAGTTTTTAAAACCTTCAAGCTAGTTAAAATACCGTCAGGGCTCTAATATGAGCCCACCAACTATACATTAACGAGCTCAATTATCTCAATTAATATGCGAGATAGTAAAAATTTGTAAACAGACAAACCATTTTTGATTTCATGATGAACAATTTGTTAGCTGACAGATTTTTGATAGCTCTGATAGAAACCGAGTGGACGTATAGCATGGGCTTCTATTAGGACATTTACGGTTAATGCTCTAATRGAAGCCCACCTTTTGAGCGCAATTATATCATTATCTCGGTTTCCATAAAAGCTATCTAAACATTGTTAACTAATAAATTGTTCATCATTTTATCACCAATATTAAATCAGTTGACAAATTTTTGATATCTTCGGTAAGAGCCGAAATACTTGAGCTCAAAGTACACCTACCGCAACCTTAATAGAACACTACCCGAACTTTCAACTTTGAACCCATATATCCCGGTTCCTATAAAAGCTATCTAAAATTTTAGACTGATAAAATATCGGTGGTAATATGATAAACAATTTACTAGTTGAAAATGTTTTGATATCCCTCATTAGAAACCGAGACAATTGAGCTCAAAATACAGTAGTTCAATTCGCCTTACCATCGACAGTCCATGCTCCAACAACTCCCAAAATGACAAAGAACAAAACGATGAGTCTCGCGATCATCTTCGAAAAATTAGTCCAAATCTGAAAATATCTCAAAGTCCGAAAATTACAAATCCATTCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTAAACAGACAAACCATTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGGTAAGGCGAATTGAACT</pcr_primer_p2>
		<pcr_amplicon_size>508</pcr_amplicon_size>
		<canonical_amplicon>TTGTAAACAGACAAACCATTTTTGATTTCATGATGAACAATTTGTTAGCTGACAGATTTTTGATAGCTCTGATAGAAACCGAGTGGACGTATAGCATGGGCTTCTATTAGGACATTTACGGTTAATGCTCTAATAGAAGCCCACCTTTTGAGCGCAATTATATCATTATCTCGGTTTCCATAAAAGCTATCTAAACATTGTTAACTAATAAATTGTTCATCATTTTATCACCAATATTAAATCAGTTGACAAATTTTTGATATCTTCGGTAAGAGCCGAAATACTTGAGCTCAAAGTACACCTACCGCAACCTTAATAGAACACTACCCGAACTTTCAACTTTGAACCCATATATCCCGGTTCCTATAAAAGCTATCTAAAATTTTAGACTGATAAAATATCGGTGGTAATATGATAAACAATTTACTAGTTGAAAATGTTTTGATATCCCTCATTAGAAACCGAGACAATTGAGCTCAAAATACAGTAGTTCAATTCGCCTTACCAT</canonical_amplicon>
		<polymorphic_amplicon>TTGTAAACAGACAAACCATTTTTGATTTCATGATGAACAATTTGTTAGCTGACAGATTTTTGATAGCTCTGATAGAAACCGAGTGGACGTATAGCATGGGCTTCTATTAGGACATTTACGGTTAATGCTCTAATRGAAGCCCACCTTTTGAGCGCAATTATATCATTATCTCGGTTTCCATAAAAGCTATCTAAACATTGTTAACTAATAAATTGTTCATCATTTTATCACCAATATTAAATCAGTTGACAAATTTTTGATATCTTCGGTAAGAGCCGAAATACTTGAGCTCAAAGTACACCTACCGCAACCTTAATAGAACACTACCCGAACTTTCAACTTTGAACCCATATATCCCGGTTCCTATAAAAGCTATCTAAAATTTTAGACTGATAAAATATCGGTGGTAATATGATAAACAATTTACTAGTTGAAAATGTTTTGATATCCCTCATTAGAAACCGAGACAATTGAGCTCAAAATACAGTAGTTCAATTCGCCTTACCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37266</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>157348</contig_pos>
        <strand>+</strand>
        <context>TTGAATCAAA[A/T]TTTAAGACAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTCATATTTTCTTTCCTAATTTTCATGGAAAATTGATTTTGAATCAAA</left_flank>
        <right_flank>TTTAAGACACCAAATTCTTGATCAATTATTTCAAAACTTCCAATTTCAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAATCAATTTGAAAAATGACGATGATGTACTTCTTCCTCCTCCTCTCCTTCTTCTTCTTTTTCTTTCTTATTTCTGGAAATAGAAAAAGAAGAAGAAACAATTTATTTTTTTTTCTCAAATTGACCTCTTCTACATTTTTTTTTTCATCACTCCTCCTCTTCTCTTTTCTCTTGCAATATCAAATTTCCTCGATTTTTTTTTCTTTTTCCAAGCTTTTCCACTTTTCCCAACTTTTCTCTTGCCTTCTGGCTTCCGATTTGTGTCAGTTTTTTTTTTGAGATTGCTCAGCTCTCAGTCAATAGATTACTGTAGCTTCAAAGATTATGTTGTTCCAAGTGATTACTGTAGTTTCTGTGTCGAAAAAATCAAGAATCTCTATTTAAATTATTATTTGTCTTTTTTTTTTCAAAAATTGATATTTTTCAAAAATTCGAGCTAAATTATTGTTTTCATATTTTCTTTCCTAATTTTCATGGAAAATTGATTTTGAATCAAAATTTAAGACACCAAATTCTTGATCAATTATTTCAAAACTTCCAATTTCAAATTGATTCCGAAAACTCTTCAACCATGAAAAGTTCTCAAAACGTCTCCCAAAACCAAAAAAAATGCCGTATTCCTTATCATATTATAATCACACACACATTTTTTTTGGAGAAGGGAACGCCCAATGACTAATCAAAAAACAGTTTATTGGCCTTTATATGCCCATTTTTACCCCCTCTATCATTCCCTTTTTTAATCATTTCCATAATCGGCTCATTTTTTCTGGGTTTAATCGATCACACTCTCTTATCGATAACCTATTTCCTTTCTGTGAAACCTCCCATTCTATTTTTGATCGATTTTTTTCTCTATTTTTTGCTCTCTCCTCTTCCGCAGCTTCTCCGAAAACTTTCTCAAAAATTTCCTTATTTTCCAGCCTACAGTAGTTATGCGAGACACAAAAGAATGGCGAGGGACGACGTCAACGAGTCGGGTATTCGTTCAAAAAGGA</canonical>
            <polymorphic>AATAATCAATTTGAAAAATGACGATGATGTACTTCTTCCTCCTCCTCTCCTTCTTCTTCTTTTTCTTTCTTATTTCTGGAAATAGAAAAAGAAGAAGAAACAATTTATTTTTTTTTCTCAAATTGACCTCTTCTACATTTTTTTTTTCATCACTCCTCCTCTTCTCTTTTCTCTTGCAATATCAAATTTCCTCGATTTTTTTTTCTTTTTCCAAGCTTTTCCACTTTTCCCAACTTTTCTCTTGCCTTCTGGCTTCCGATTTGTGTCAGTTTTTTTTTTGAGATTGCTCAGCTCTCAGTCAATAGATTACTGTAGCTTCAAAGATTATGTTGTTCCAAGTGATTACTGTAGTTTCTGTGTCGAAAAAATCAAGAATCTCTATTTAAATTATTATTTGTCTTTTTTTTTTCAAAAATTGATATTTTTCAAAAATTCGAGCTAAATTATTGTTTTCATATTTTCTTTCCTAATTTTCATGGAAAATTGATTTTGAATCAAAWTTTAAGACACCAAATTCTTGATCAATTATTTCAAAACTTCCAATTTCAAATTGATTCCGAAAACTCTTCAACCATGAAAAGTTCTCAAAACGTCTCCCAAAACCAAAAAAAATGCCGTATTCCTTATCATATTATAATCACACACACATTTTTTTTGGAGAAGGGAACGCCCAATGACTAATCAAAAAACAGTTTATTGGCCTTTATATGCCCATTTTTACCCCCTCTATCATTCCCTTTTTTAATCATTTCCATAATCGGCTCATTTTTTCTGGGTTTAATCGATCACACTCTCTTATCGATAACCTATTTCCTTTCTGTGAAACCTCCCATTCTATTTTTGATCGATTTTTTTCTCTATTTTTTGCTCTCTCCTCTTCCGCAGCTTCTCCGAAAACTTTCTCAAAAATTTCCTTATTTTCCAGCCTACAGTAGTTATGCGAGACACAAAAGAATGGCGAGGGACGACGTCAACGAGTCGGGTATTCGTTCAAAAAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>395 246 184 93 68 14</canonical_bands>
                <polymorphic_bands>395 246 184 93 82</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>359 201 94 93 64 28 27 19 18 17 17 14 13 11 11 7 7</canonical_bands>
                <polymorphic_bands>359 201 94 93 64 31 28 27 19 18 17 13 11 11 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCAAGTGATTACTGTAGTTTCTG</pcr_primer_p1>
		<pcr_primer_p2>ACTTTTCATGGTTGAAGAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCAAGTGATTACTGTAGTTTCTGTGTCGAAAAAATCAAGAATCTCTATTTAAATTATTATTTGTCTTTTTTTTTTCAAAAATTGATATTTTTCAAAAATTCGAGCTAAATTATTGTTTTCATATTTTCTTTCCTAATTTTCATGGAAAATTGATTTTGAATCAAAATTTAAGACACCAAATTCTTGATCAATTATTTCAAAACTTCCAATTTCAAATTGATTCCGAAAACTCTTCAACCATGAAAAGT</canonical_amplicon>
		<polymorphic_amplicon>TCCAAGTGATTACTGTAGTTTCTGTGTCGAAAAAATCAAGAATCTCTATTTAAATTATTATTTGTCTTTTTTTTTTCAAAAATTGATATTTTTCAAAAATTCGAGCTAAATTATTGTTTTCATATTTTCTTTCCTAATTTTCATGGAAAATTGATTTTGAATCAAAWTTTAAGACACCAAATTCTTGATCAATTATTTCAAAACTTCCAATTTCAAATTGATTCCGAAAACTCTTCAACCATGAAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37267</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>157376</contig_pos>
        <strand>+</strand>
        <context>TTGATCAATT[A/T]TTTCAAAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAAAATTGATTTTGAATCAAAATTTAAGACACCAAATTCTTGATCAATT</left_flank>
        <right_flank>TTTCAAAACTTCCAATTTCAAATTGATTCCGAAAACTCTTCAACCATGAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACTTCTTCCTCCTCCTCTCCTTCTTCTTCTTTTTCTTTCTTATTTCTGGAAATAGAAAAAGAAGAAGAAACAATTTATTTTTTTTTCTCAAATTGACCTCTTCTACATTTTTTTTTTCATCACTCCTCCTCTTCTCTTTTCTCTTGCAATATCAAATTTCCTCGATTTTTTTTTCTTTTTCCAAGCTTTTCCACTTTTCCCAACTTTTCTCTTGCCTTCTGGCTTCCGATTTGTGTCAGTTTTTTTTTTGAGATTGCTCAGCTCTCAGTCAATAGATTACTGTAGCTTCAAAGATTATGTTGTTCCAAGTGATTACTGTAGTTTCTGTGTCGAAAAAATCAAGAATCTCTATTTAAATTATTATTTGTCTTTTTTTTTTCAAAAATTGATATTTTTCAAAAATTCGAGCTAAATTATTGTTTTCATATTTTCTTTCCTAATTTTCATGGAAAATTGATTTTGAATCAAAATTTAAGACACCAAATTCTTGATCAATTATTTCAAAACTTCCAATTTCAAATTGATTCCGAAAACTCTTCAACCATGAAAAGTTCTCAAAACGTCTCCCAAAACCAAAAAAAATGCCGTATTCCTTATCATATTATAATCACACACACATTTTTTTTGGAGAAGGGAACGCCCAATGACTAATCAAAAAACAGTTTATTGGCCTTTATATGCCCATTTTTACCCCCTCTATCATTCCCTTTTTTAATCATTTCCATAATCGGCTCATTTTTTCTGGGTTTAATCGATCACACTCTCTTATCGATAACCTATTTCCTTTCTGTGAAACCTCCCATTCTATTTTTGATCGATTTTTTTCTCTATTTTTTGCTCTCTCCTCTTCCGCAGCTTCTCCGAAAACTTTCTCAAAAATTTCCTTATTTTCCAGCCTACAGTAGTTATGCGAGACACAAAAGAATGGCGAGGGACGACGTCAACGAGTCGGGTATTCGTTCAAAAAGGATATCAATTATCAGATGAATTGGCACTTC</canonical>
            <polymorphic>GTACTTCTTCCTCCTCCTCTCCTTCTTCTTCTTTTTCTTTCTTATTTCTGGAAATAGAAAAAGAAGAAGAAACAATTTATTTTTTTTTCTCAAATTGACCTCTTCTACATTTTTTTTTTCATCACTCCTCCTCTTCTCTTTTCTCTTGCAATATCAAATTTCCTCGATTTTTTTTTCTTTTTCCAAGCTTTTCCACTTTTCCCAACTTTTCTCTTGCCTTCTGGCTTCCGATTTGTGTCAGTTTTTTTTTTGAGATTGCTCAGCTCTCAGTCAATAGATTACTGTAGCTTCAAAGATTATGTTGTTCCAAGTGATTACTGTAGTTTCTGTGTCGAAAAAATCAAGAATCTCTATTTAAATTATTATTTGTCTTTTTTTTTTCAAAAATTGATATTTTTCAAAAATTCGAGCTAAATTATTGTTTTCATATTTTCTTTCCTAATTTTCATGGAAAATTGATTTTGAATCAAAATTTAAGACACCAAATTCTTGATCAATTWTTTCAAAACTTCCAATTTCAAATTGATTCCGAAAACTCTTCAACCATGAAAAGTTCTCAAAACGTCTCCCAAAACCAAAAAAAATGCCGTATTCCTTATCATATTATAATCACACACACATTTTTTTTGGAGAAGGGAACGCCCAATGACTAATCAAAAAACAGTTTATTGGCCTTTATATGCCCATTTTTACCCCCTCTATCATTCCCTTTTTTAATCATTTCCATAATCGGCTCATTTTTTCTGGGTTTAATCGATCACACTCTCTTATCGATAACCTATTTCCTTTCTGTGAAACCTCCCATTCTATTTTTGATCGATTTTTTTCTCTATTTTTTGCTCTCTCCTCTTCCGCAGCTTCTCCGAAAACTTTCTCAAAAATTTCCTTATTTTCCAGCCTACAGTAGTTATGCGAGACACAAAAGAATGGCGAGGGACGACGTCAACGAGTCGGGTATTCGTTCAAAAAGGATATCAATTATCAGATGAATTGGCACTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAAGTGATTACTGTAGTTTCTG</pcr_primer_p1>
		<pcr_primer_p2>ACTTTTCATGGTTGAAGAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCAAGTGATTACTGTAGTTTCTGTGTCGAAAAAATCAAGAATCTCTATTTAAATTATTATTTGTCTTTTTTTTTTCAAAAATTGATATTTTTCAAAAATTCGAGCTAAATTATTGTTTTCATATTTTCTTTCCTAATTTTCATGGAAAATTGATTTTGAATCAAAATTTAAGACACCAAATTCTTGATCAATTATTTCAAAACTTCCAATTTCAAATTGATTCCGAAAACTCTTCAACCATGAAAAGT</canonical_amplicon>
		<polymorphic_amplicon>TCCAAGTGATTACTGTAGTTTCTGTGTCGAAAAAATCAAGAATCTCTATTTAAATTATTATTTGTCTTTTTTTTTTCAAAAATTGATATTTTTCAAAAATTCGAGCTAAATTATTGTTTTCATATTTTCTTTCCTAATTTTCATGGAAAATTGATTTTGAATCAAAATTTAAGACACCAAATTCTTGATCAATTWTTTCAAAACTTCCAATTTCAAATTGATTCCGAAAACTCTTCAACCATGAAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37268</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>157504</contig_pos>
        <strand>+</strand>
        <context>ACATTTTTTT[G/T]GSAGAAGGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAAAATGCCGTATTCCTTATCATATTATAATCACACACACATTTTTTT</left_flank>
        <right_flank>GGAGAAGGGAACGCCCAATGACTAATCAAAAAACAGTTTATTGGCCTTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTCTTCTCTTTTCTCTTGCAATATCAAATTTCCTCGATTTTTTTTTCTTTTTCCAAGCTTTTCCACTTTTCCCAACTTTTCTCTTGCCTTCTGGCTTCCGATTTGTGTCAGTTTTTTTTTTGAGATTGCTCAGCTCTCAGTCAATAGATTACTGTAGCTTCAAAGATTATGTTGTTCCAAGTGATTACTGTAGTTTCTGTGTCGAAAAAATCAAGAATCTCTATTTAAATTATTATTTGTCTTTTTTTTTTCAAAAATTGATATTTTTCAAAAATTCGAGCTAAATTATTGTTTTCATATTTTCTTTCCTAATTTTCATGGAAAATTGATTTTGAATCAAAATTTAAGACACCAAATTCTTGATCAATTATTTCAAAACTTCCAATTTCAAATTGATTCCGAAAACTCTTCAACCATGAAAAGTTCTCAAAACGTCTCCCAAAACCAAAAAAAATGCCGTATTCCTTATCATATTATAATCACACACACATTTTTTTTGGAGAAGGGAACGCCCAATGACTAATCAAAAAACAGTTTATTGGCCTTTATATGCCCATTTTTACCCCCTCTATCATTCCCTTTTTTAATCATTTCCATAATCGGCTCATTTTTTCTGGGTTTAATCGATCACACTCTCTTATCGATAACCTATTTCCTTTCTGTGAAACCTCCCATTCTATTTTTGATCGATTTTTTTCTCTATTTTTTGCTCTCTCCTCTTCCGCAGCTTCTCCGAAAACTTTCTCAAAAATTTCCTTATTTTCCAGCCTACAGTAGTTATGCGAGACACAAAAGAATGGCGAGGGACGACGTCAACGAGTCGGGTATTCGTTCAAAAAGGATATCAATTATCAGATGAATTGGCACTTCGAAAAGTGCAAGTTTTGGAGAGGCGGTACGGTGGAGCGCAGTTGGCACATCGAGCAGCGACGATTATTCAAAGGGCATGGAGGGAATACTGTATAATGAAACAGTGGATGGTTATTAGGCATAAACAT</canonical>
            <polymorphic>TCCTCTTCTCTTTTCTCTTGCAATATCAAATTTCCTCGATTTTTTTTTCTTTTTCCAAGCTTTTCCACTTTTCCCAACTTTTCTCTTGCCTTCTGGCTTCCGATTTGTGTCAGTTTTTTTTTTGAGATTGCTCAGCTCTCAGTCAATAGATTACTGTAGCTTCAAAGATTATGTTGTTCCAAGTGATTACTGTAGTTTCTGTGTCGAAAAAATCAAGAATCTCTATTTAAATTATTATTTGTCTTTTTTTTTTCAAAAATTGATATTTTTCAAAAATTCGAGCTAAATTATTGTTTTCATATTTTCTTTCCTAATTTTCATGGAAAATTGATTTTGAATCAAAATTTAAGACACCAAATTCTTGATCAATTATTTCAAAACTTCCAATTTCAAATTGATTCCGAAAACTCTTCAACCATGAAAAGTTCTCAAAACGTCTCCCAAAACCAAAAAAAATGCCGTATTCCTTATCATATTATAATCACACACACATTTTTTTKGGAGAAGGGAACGCCCAATGACTAATCAAAAAACAGTTTATTGGCCTTTATATGCCCATTTTTACCCCCTCTATCATTCCCTTTTTTAATCATTTCCATAATCGGCTCATTTTTTCTGGGTTTAATCGATCACACTCTCTTATCGATAACCTATTTCCTTTCTGTGAAACCTCCCATTCTATTTTTGATCGATTTTTTTCTCTATTTTTTGCTCTCTCCTCTTCCGCAGCTTCTCCGAAAACTTTCTCAAAAATTTCCTTATTTTCCAGCCTACAGTAGTTATGCGAGACACAAAAGAATGGCGAGGGACGACGTCAACGAGTCGGGTATTCGTTCAAAAAGGATATCAATTATCAGATGAATTGGCACTTCGAAAAGTGCAAGTTTTGGAGAGGCGGTACGGTGGAGCGCAGTTGGCACATCGAGCAGCGACGATTATTCAAAGGGCATGGAGGGAATACTGTATAATGAAACAGTGGATGGTTATTAGGCATAAACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGTTCTCAAAACGTCTCC</pcr_primer_p1>
		<pcr_primer_p2>GTTTCACAGAAAGGAAATAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAGTTCTCAAAACGTCTCCCAAAACCAAAAAAAATGCCGTATTCCTTATCATATTATAATCACACACACATTTTTTTTGGAGAAGGGAACGCCCAATGACTAATCAAAAAACAGTTTATTGGCCTTTATATGCCCATTTTTACCCCCTCTATCATTCCCTTTTTTAATCATTTCCATAATCGGCTCATTTTTTCTGGGTTTAATCGATCACACTCTCTTATCGATAACCTATTTCCTTTCTGTGAAAC</canonical_amplicon>
		<polymorphic_amplicon>AAAAGTTCTCAAAACGTCTCCCAAAACCAAAAAAAATGCCGTATTCCTTATCATATTATAATCACACACACATTTTTTTKGGAGAAGGGAACGCCCAATGACTAATCAAAAAACAGTTTATTGGCCTTTATATGCCCATTTTTACCCCCTCTATCATTCCCTTTTTTAATCATTTCCATAATCGGCTCATTTTTTCTGGGTTTAATCGATCACACTCTCTTATCGATAACCTATTTCCTTTCTGTGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37269</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>157506</contig_pos>
        <strand>+</strand>
        <context>ATTTTTTTKG[C/G]AGAAGGGAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAAATGCCGTATTCCTTATCATATTATAATCACACACACATTTTTTTTG</left_flank>
        <right_flank>AGAAGGGAACGCCCAATGACTAATCAAAAAACAGTTTATTGGCCTTTATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTTCTCTTTTCTCTTGCAATATCAAATTTCCTCGATTTTTTTTTCTTTTTCCAAGCTTTTCCACTTTTCCCAACTTTTCTCTTGCCTTCTGGCTTCCGATTTGTGTCAGTTTTTTTTTTGAGATTGCTCAGCTCTCAGTCAATAGATTACTGTAGCTTCAAAGATTATGTTGTTCCAAGTGATTACTGTAGTTTCTGTGTCGAAAAAATCAAGAATCTCTATTTAAATTATTATTTGTCTTTTTTTTTTCAAAAATTGATATTTTTCAAAAATTCGAGCTAAATTATTGTTTTCATATTTTCTTTCCTAATTTTCATGGAAAATTGATTTTGAATCAAAATTTAAGACACCAAATTCTTGATCAATTATTTCAAAACTTCCAATTTCAAATTGATTCCGAAAACTCTTCAACCATGAAAAGTTCTCAAAACGTCTCCCAAAACCAAAAAAAATGCCGTATTCCTTATCATATTATAATCACACACACATTTTTTTTGGAGAAGGGAACGCCCAATGACTAATCAAAAAACAGTTTATTGGCCTTTATATGCCCATTTTTACCCCCTCTATCATTCCCTTTTTTAATCATTTCCATAATCGGCTCATTTTTTCTGGGTTTAATCGATCACACTCTCTTATCGATAACCTATTTCCTTTCTGTGAAACCTCCCATTCTATTTTTGATCGATTTTTTTCTCTATTTTTTGCTCTCTCCTCTTCCGCAGCTTCTCCGAAAACTTTCTCAAAAATTTCCTTATTTTCCAGCCTACAGTAGTTATGCGAGACACAAAAGAATGGCGAGGGACGACGTCAACGAGTCGGGTATTCGTTCAAAAAGGATATCAATTATCAGATGAATTGGCACTTCGAAAAGTGCAAGTTTTGGAGAGGCGGTACGGTGGAGCGCAGTTGGCACATCGAGCAGCGACGATTATTCAAAGGGCATGGAGGGAATACTGTATAATGAAACAGTGGATGGTTATTAGGCATAAACATGA</canonical>
            <polymorphic>CTCTTCTCTTTTCTCTTGCAATATCAAATTTCCTCGATTTTTTTTTCTTTTTCCAAGCTTTTCCACTTTTCCCAACTTTTCTCTTGCCTTCTGGCTTCCGATTTGTGTCAGTTTTTTTTTTGAGATTGCTCAGCTCTCAGTCAATAGATTACTGTAGCTTCAAAGATTATGTTGTTCCAAGTGATTACTGTAGTTTCTGTGTCGAAAAAATCAAGAATCTCTATTTAAATTATTATTTGTCTTTTTTTTTTCAAAAATTGATATTTTTCAAAAATTCGAGCTAAATTATTGTTTTCATATTTTCTTTCCTAATTTTCATGGAAAATTGATTTTGAATCAAAATTTAAGACACCAAATTCTTGATCAATTATTTCAAAACTTCCAATTTCAAATTGATTCCGAAAACTCTTCAACCATGAAAAGTTCTCAAAACGTCTCCCAAAACCAAAAAAAATGCCGTATTCCTTATCATATTATAATCACACACACATTTTTTTTGSAGAAGGGAACGCCCAATGACTAATCAAAAAACAGTTTATTGGCCTTTATATGCCCATTTTTACCCCCTCTATCATTCCCTTTTTTAATCATTTCCATAATCGGCTCATTTTTTCTGGGTTTAATCGATCACACTCTCTTATCGATAACCTATTTCCTTTCTGTGAAACCTCCCATTCTATTTTTGATCGATTTTTTTCTCTATTTTTTGCTCTCTCCTCTTCCGCAGCTTCTCCGAAAACTTTCTCAAAAATTTCCTTATTTTCCAGCCTACAGTAGTTATGCGAGACACAAAAGAATGGCGAGGGACGACGTCAACGAGTCGGGTATTCGTTCAAAAAGGATATCAATTATCAGATGAATTGGCACTTCGAAAAGTGCAAGTTTTGGAGAGGCGGTACGGTGGAGCGCAGTTGGCACATCGAGCAGCGACGATTATTCAAAGGGCATGGAGGGAATACTGTATAATGAAACAGTGGATGGTTATTAGGCATAAACATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGTTCTCAAAACGTCTCC</pcr_primer_p1>
		<pcr_primer_p2>GTTTCACAGAAAGGAAATAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAGTTCTCAAAACGTCTCCCAAAACCAAAAAAAATGCCGTATTCCTTATCATATTATAATCACACACACATTTTTTTTGGAGAAGGGAACGCCCAATGACTAATCAAAAAACAGTTTATTGGCCTTTATATGCCCATTTTTACCCCCTCTATCATTCCCTTTTTTAATCATTTCCATAATCGGCTCATTTTTTCTGGGTTTAATCGATCACACTCTCTTATCGATAACCTATTTCCTTTCTGTGAAAC</canonical_amplicon>
		<polymorphic_amplicon>AAAAGTTCTCAAAACGTCTCCCAAAACCAAAAAAAATGCCGTATTCCTTATCATATTATAATCACACACACATTTTTTTTGSAGAAGGGAACGCCCAATGACTAATCAAAAAACAGTTTATTGGCCTTTATATGCCCATTTTTACCCCCTCTATCATTCCCTTTTTTAATCATTTCCATAATCGGCTCATTTTTTCTGGGTTTAATCGATCACACTCTCTTATCGATAACCTATTTCCTTTCTGTGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37270</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>261223</contig_pos>
        <strand>+</strand>
        <context>TGACCCCTCT[G/T]TACTTTAGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTATGTTAATGAATATGGTACCCGATTTTCCCACGATTTCTGACCCCTCT</left_flank>
        <right_flank>TACTTTAGCAAACAATAAAGAAAAAGAAGAGAAAACAGCTCAAATATATA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAGGAATCGAGTGCTTCCTTCCTATTTTTAGCCAAAATGTTTGTCAGCCACACATCAAAACACGTTTTCCAGCACTTTCAGAAGTTCCCTTTTCATTTTAACATGTTGACGCACATCAAGTAAATCGCCACCTGATAAGAAACCTCGGCGCCTTGAGACACGCGCCATGTGTACTCCTTGAGTAACCTAGTCTCTCGCCGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGCCCCGCATTGGGCTTATGTTTTTTTTTCTCTTTTTAATTGATGGTTACAGTATTCTGACTGATTTAAAGAGGGATTTTCGCTCTATATTGTCTGACTCTCTCTTTTTCTGCCTCTCTCCATTAATTTTTTTTGAATGGATAATAAAAACCAAGTAATCAAATAATAGCCCTAATCACTGATAATAAAATTTATGTTAATGAATATGGTACCCGATTTTCCCACGATTTCTGACCCCTCTGTACTTTAGCAAACAATAAAGAAAAAGAAGAGAAAACAGCTCAAATATATATGCTTTCAATTTTTATGATTGATCATCAACGGCTCCGCCCCCTTTCCCACATCTCCTTATGCTTTTTGTTTCATATCAATCACCACCTCCCAATCATTTTGATCTAACATTTTTATCTATTTTCAGCATAGTTGCAAAATCTCGGGCAGGCCCGGCCTGCGGGTCGGCCCGTCGAGAACTTCGGCGGGCCGGGCCGGGCCGGGTCGATGAAGTGCCGGCCCGGGGTACCTACAGACGTGGATTTTTTTGAATTTGTTTCGAAATTTTTGAGTTTTTTTCAAAAATTTAGACAAAACGACCTATTTTTCGATTATTTCGTACTTTGTTAATTTTATTGAATAATTCAACCTTTTTTCTTTTTTAATTCAAAAAAATTTCCCAAATTTTCATTGAAAAATTTTCAACAGTGGTAGGCGGGCAGGCCCCGGGCCGGGCTGGGCCGAGAAAATT</canonical>
            <polymorphic>GAAAGGAATCGAGTGCTTCCTTCCTATTTTTAGCCAAAATGTTTGTCAGCCACACATCAAAACACGTTTTCCAGCACTTTCAGAAGTTCCCTTTTCATTTTAACATGTTGACGCACATCAAGTAAATCGCCACCTGATAAGAAACCTCGGCGCCTTGAGACACGCGCCATGTGTACTCCTTGAGTAACCTAGTCTCTCGCCGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGCCCCGCATTGGGCTTATGTTTTTTTTTCTCTTTTTAATTGATGGTTACAGTATTCTGACTGATTTAAAGAGGGATTTTCGCTCTATATTGTCTGACTCTCTCTTTTTCTGCCTCTCTCCATTAATTTTTTTTGAATGGATAATAAAAACCAAGTAATCAAATAATAGCCCTAATCACTGATAATAAAATTTATGTTAATGAATATGGTACCCGATTTTCCCACGATTTCTGACCCCTCTKTACTTTAGCAAACAATAAAGAAAAAGAAGAGAAAACAGCTCAAATATATATGCTTTCAATTTTTATGATTGATCATCAACGGCTCCGCCCCCTTTCCCACATCTCCTTATGCTTTTTGTTTCATATCAATCACCACCTCCCAATCATTTTGATCTAACATTTTTATCTATTTTCAGCATAGTTGCAAAATCTCGGGCAGGCCCGGCCTGCGGGTCGGCCCGTCGAGAACTTCGGCGGGCCGGGCCGGGCCGGGTCGATGAAGTGCCGGCCCGGGGTACCTACAGACGTGGATTTTTTTGAATTTGTTTCGAAATTTTTGAGTTTTTTTCAAAAATTTAGACAAAACGACCTATTTTTCGATTATTTCGTACTTTGTTAATTTTATTGAATAATTCAACCTTTTTTCTTTTTTAATTCAAAAAAATTTCCCAAATTTTCATTGAAAAATTTTCAACAGTGGTAGGCGGGCAGGCCCCGGGCCGGGCTGGGCCGAGAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>294 275 174 131 93 33</canonical_bands>
                <polymorphic_bands>308 294 174 131 93</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>501 327 172</canonical_bands>
                <polymorphic_bands>828 172</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAATGGATAATAAAAACCAAGT</pcr_primer_p1>
		<pcr_primer_p2>GGTGATTGATATGAAACAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TGAATGGATAATAAAAACCAAGTAATCAAATAATAGCCCTAATCACTGATAATAAAATTTATGTTAATGAATATGGTACCCGATTTTCCCACGATTTCTGACCCCTCTGTACTTTAGCAAACAATAAAGAAAAAGAAGAGAAAACAGCTCAAATATATATGCTTTCAATTTTTATGATTGATCATCAACGGCTCCGCCCCCTTTCCCACATCTCCTTATGCTTTTTGTTTCATATCAATCACC</canonical_amplicon>
		<polymorphic_amplicon>TGAATGGATAATAAAAACCAAGTAATCAAATAATAGCCCTAATCACTGATAATAAAATTTATGTTAATGAATATGGTACCCGATTTTCCCACGATTTCTGACCCCTCTKTACTTTAGCAAACAATAAAGAAAAAGAAGAGAAAACAGCTCAAATATATATGCTTTCAATTTTTATGATTGATCATCAACGGCTCCGCCCCCTTTCCCACATCTCCTTATGCTTTTTGTTTCATATCAATCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37271</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>291667</contig_pos>
        <strand>+</strand>
        <context>CAACCGATTT[A/T]CCAGCTTCGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTATGAACGGATTTGCCAACCGAATTGTCAATCGATTTGTCAACCGATTT</left_flank>
        <right_flank>CCAGCTTCGTCGGCCGCAACGTCGATTAGTTTGCTAGCCGATGTGGTAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATTTATTTTTAAAAGGAAGTTTTATTTTTTCCAGACTCCCAAATCACTTTTACATCTGAAAATATTCTGGAAATTCTCGAATTTTCCGATTTTCAAGAACCGTTTTGTTTTATGGTGCGTTTTCAGCCAATTTTTTTTACTATCAACAGTTTTTTGCGGCTTTTTTTGTTGGAAAAATAACAGAAAACTCAATGAAAATCAGGAAAAAAAAGGAAAATGAACGTATTTTTCAGGTTTCGAAATTTGTCGTTGTGTTAAATTTTTTTAAAACTACAAAATTGAAATTATTTGTAGCATCTAGTTATAGGCCTCCAAATTCAAAAAGTGAATGAGTCATTTTTTAAACTAAAAATTTAAAAAACAACTAAATTCAACAACAACTTTATTTTCATCAAAAAAGGCAATCAAAGTCCAATAGCAGTTTTATCAGCCGATTCGTCCGCCGAATTATGAACGGATTTGCCAACCGAATTGTCAATCGATTTGTCAACCGATTTACCAGCTTCGTCGGCCGCAACGTCGATTAGTTTGCTAGCCGATGTGGTAGCCGTATCGTCAATTGAACTGTCAGCCTGTTTGTCGGTTGTTTTTGTTGTCTTCTTGGAAACCGAGCTGCCAGACGACTTCTTCTTGGTTTTTGCAGTCCGCTTTTTTGCTTTTTTTGCAGGTTGCTTCGCAGCCAAACTGTCAGTCACCTGTCTGTGTGTTTTCGGCGGATTGGGAACCCATCCTCGGGAAGTTGTCTTCTTGCGAAATCGTATGCTTTTTGTTCATCAGTACGACTATCACCATATGGTTTATCCACATCATTTATAAATCTTATAGGAACAACAACTAAATCCGGAGTGATCATCGGGAGTCATTTTCTTGGTATTTTTGTCAAAAAGACCTCTCATTTGAGAAACTTTTTCTTTGATACCAGCAGGCCACGATGTTTTCACAAGGGAAAGAGCATCCAATGAACTTTCCTCCTTGACAAAATCACTGTATTTAGCCAA</canonical>
            <polymorphic>TCATTTATTTTTAAAAGGAAGTTTTATTTTTTCCAGACTCCCAAATCACTTTTACATCTGAAAATATTCTGGAAATTCTCGAATTTTCCGATTTTCAAGAACCGTTTTGTTTTATGGTGCGTTTTCAGCCAATTTTTTTTACTATCAACAGTTTTTTGCGGCTTTTTTTGTTGGAAAAATAACAGAAAACTCAATGAAAATCAGGAAAAAAAAGGAAAATGAACGTATTTTTCAGGTTTCGAAATTTGTCGTTGTGTTAAATTTTTTTAAAACTACAAAATTGAAATTATTTGTAGCATCTAGTTATAGGCCTCCAAATTCAAAAAGTGAATGAGTCATTTTTTAAACTAAAAATTTAAAAAACAACTAAATTCAACAACAACTTTATTTTCATCAAAAAAGGCAATCAAAGTCCAATAGCAGTTTTATCAGCCGATTCGTCCGCCGAATTATGAACGGATTTGCCAACCGAATTGTCAATCGATTTGTCAACCGATTTWCCAGCTTCGTCGGCCGCAACGTCGATTAGTTTGCTAGCCGATGTGGTAGCCGTATCGTCAATTGAACTGTCAGCCTGTTTGTCGGTTGTTTTTGTTGTCTTCTTGGAAACCGAGCTGCCAGACGACTTCTTCTTGGTTTTTGCAGTCCGCTTTTTTGCTTTTTTTGCAGGTTGCTTCGCAGCCAAACTGTCAGTCACCTGTCTGTGTGTTTTCGGCGGATTGGGAACCCATCCTCGGGAAGTTGTCTTCTTGCGAAATCGTATGCTTTTTGTTCATCAGTACGACTATCACCATATGGTTTATCCACATCATTTATAAATCTTATAGGAACAACAACTAAATCCGGAGTGATCATCGGGAGTCATTTTCTTGGTATTTTTGTCAAAAAGACCTCTCATTTGAGAAACTTTTTCTTTGATACCAGCAGGCCACGATGTTTTCACAAGGGAAAGAGCATCCAATGAACTTTCCTCCTTGACAAAATCACTGTATTTAGCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACAACTAAATTCAACAACAA</pcr_primer_p1>
		<pcr_primer_p2>TTTCCAAGAAGACAACAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAAACAACTAAATTCAACAACAACTTTATTTTCATCAAAAAAGGCAATCAAAGTCCAATAGCAGTTTTATCAGCCGATTCGTCCGCCGAATTATGAACGGATTTGCCAACCGAATTGTCAATCGATTTGTCAACCGATTTACCAGCTTCGTCGGCCGCAACGTCGATTAGTTTGCTAGCCGATGTGGTAGCCGTATCGTCAATTGAACTGTCAGCCTGTTTGTCGGTTGTTTTTGTTGTCTTCTTGGAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAACAACTAAATTCAACAACAACTTTATTTTCATCAAAAAAGGCAATCAAAGTCCAATAGCAGTTTTATCAGCCGATTCGTCCGCCGAATTATGAACGGATTTGCCAACCGAATTGTCAATCGATTTGTCAACCGATTTWCCAGCTTCGTCGGCCGCAACGTCGATTAGTTTGCTAGCCGATGTGGTAGCCGTATCGTCAATTGAACTGTCAGCCTGTTTGTCGGTTGTTTTTGTTGTCTTCTTGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37272</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>291695</contig_pos>
        <strand>+</strand>
        <context>AACGTCGATT[A/G]GTTTGCTAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATCGATTTGTCAACCGATTTACCAGCTTCGTCGGCCGCAACGTCGATT</left_flank>
        <right_flank>GTTTGCTAGCCGATGTGGTAGCCGTATCGTCAATTGAACTGTCAGCCTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCCAGACTCCCAAATCACTTTTACATCTGAAAATATTCTGGAAATTCTCGAATTTTCCGATTTTCAAGAACCGTTTTGTTTTATGGTGCGTTTTCAGCCAATTTTTTTTACTATCAACAGTTTTTTGCGGCTTTTTTTGTTGGAAAAATAACAGAAAACTCAATGAAAATCAGGAAAAAAAAGGAAAATGAACGTATTTTTCAGGTTTCGAAATTTGTCGTTGTGTTAAATTTTTTTAAAACTACAAAATTGAAATTATTTGTAGCATCTAGTTATAGGCCTCCAAATTCAAAAAGTGAATGAGTCATTTTTTAAACTAAAAATTTAAAAAACAACTAAATTCAACAACAACTTTATTTTCATCAAAAAAGGCAATCAAAGTCCAATAGCAGTTTTATCAGCCGATTCGTCCGCCGAATTATGAACGGATTTGCCAACCGAATTGTCAATCGATTTGTCAACCGATTTACCAGCTTCGTCGGCCGCAACGTCGATTAGTTTGCTAGCCGATGTGGTAGCCGTATCGTCAATTGAACTGTCAGCCTGTTTGTCGGTTGTTTTTGTTGTCTTCTTGGAAACCGAGCTGCCAGACGACTTCTTCTTGGTTTTTGCAGTCCGCTTTTTTGCTTTTTTTGCAGGTTGCTTCGCAGCCAAACTGTCAGTCACCTGTCTGTGTGTTTTCGGCGGATTGGGAACCCATCCTCGGGAAGTTGTCTTCTTGCGAAATCGTATGCTTTTTGTTCATCAGTACGACTATCACCATATGGTTTATCCACATCATTTATAAATCTTATAGGAACAACAACTAAATCCGGAGTGATCATCGGGAGTCATTTTCTTGGTATTTTTGTCAAAAAGACCTCTCATTTGAGAAACTTTTTCTTTGATACCAGCAGGCCACGATGTTTTCACAAGGGAAAGAGCATCCAATGAACTTTCCTCCTTGACAAAATCACTGTATTTAGCCAAGTATTTTGAATCGATTTTAGCGATGTTA</canonical>
            <polymorphic>TTTTCCAGACTCCCAAATCACTTTTACATCTGAAAATATTCTGGAAATTCTCGAATTTTCCGATTTTCAAGAACCGTTTTGTTTTATGGTGCGTTTTCAGCCAATTTTTTTTACTATCAACAGTTTTTTGCGGCTTTTTTTGTTGGAAAAATAACAGAAAACTCAATGAAAATCAGGAAAAAAAAGGAAAATGAACGTATTTTTCAGGTTTCGAAATTTGTCGTTGTGTTAAATTTTTTTAAAACTACAAAATTGAAATTATTTGTAGCATCTAGTTATAGGCCTCCAAATTCAAAAAGTGAATGAGTCATTTTTTAAACTAAAAATTTAAAAAACAACTAAATTCAACAACAACTTTATTTTCATCAAAAAAGGCAATCAAAGTCCAATAGCAGTTTTATCAGCCGATTCGTCCGCCGAATTATGAACGGATTTGCCAACCGAATTGTCAATCGATTTGTCAACCGATTTACCAGCTTCGTCGGCCGCAACGTCGATTRGTTTGCTAGCCGATGTGGTAGCCGTATCGTCAATTGAACTGTCAGCCTGTTTGTCGGTTGTTTTTGTTGTCTTCTTGGAAACCGAGCTGCCAGACGACTTCTTCTTGGTTTTTGCAGTCCGCTTTTTTGCTTTTTTTGCAGGTTGCTTCGCAGCCAAACTGTCAGTCACCTGTCTGTGTGTTTTCGGCGGATTGGGAACCCATCCTCGGGAAGTTGTCTTCTTGCGAAATCGTATGCTTTTTGTTCATCAGTACGACTATCACCATATGGTTTATCCACATCATTTATAAATCTTATAGGAACAACAACTAAATCCGGAGTGATCATCGGGAGTCATTTTCTTGGTATTTTTGTCAAAAAGACCTCTCATTTGAGAAACTTTTTCTTTGATACCAGCAGGCCACGATGTTTTCACAAGGGAAAGAGCATCCAATGAACTTTCCTCCTTGACAAAATCACTGTATTTAGCCAAGTATTTTGAATCGATTTTAGCGATGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACAACTAAATTCAACAACAA</pcr_primer_p1>
		<pcr_primer_p2>TTTCCAAGAAGACAACAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAAACAACTAAATTCAACAACAACTTTATTTTCATCAAAAAAGGCAATCAAAGTCCAATAGCAGTTTTATCAGCCGATTCGTCCGCCGAATTATGAACGGATTTGCCAACCGAATTGTCAATCGATTTGTCAACCGATTTACCAGCTTCGTCGGCCGCAACGTCGATTAGTTTGCTAGCCGATGTGGTAGCCGTATCGTCAATTGAACTGTCAGCCTGTTTGTCGGTTGTTTTTGTTGTCTTCTTGGAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAAACAACTAAATTCAACAACAACTTTATTTTCATCAAAAAAGGCAATCAAAGTCCAATAGCAGTTTTATCAGCCGATTCGTCCGCCGAATTATGAACGGATTTGCCAACCGAATTGTCAATCGATTTGTCAACCGATTTACCAGCTTCGTCGGCCGCAACGTCGATTRGTTTGCTAGCCGATGTGGTAGCCGTATCGTCAATTGAACTGTCAGCCTGTTTGTCGGTTGTTTTTGTTGTCTTCTTGGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37273</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>291956</contig_pos>
        <strand>+</strand>
        <context>GTACGACTAT[C/T]ACCATATGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGTTGTCTTCTTGCGAAATCGTATGCTTTTTGTTCATCAGTACGACTAT</left_flank>
        <right_flank>ACCATATGGTTTATCCACATCATTTATAAATCTTATAGGAACAACAACTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGTAGCATCTAGTTATAGGCCTCCAAATTCAAAAAGTGAATGAGTCATTTTTTAAACTAAAAATTTAAAAAACAACTAAATTCAACAACAACTTTATTTTCATCAAAAAAGGCAATCAAAGTCCAATAGCAGTTTTATCAGCCGATTCGTCCGCCGAATTATGAACGGATTTGCCAACCGAATTGTCAATCGATTTGTCAACCGATTTACCAGCTTCGTCGGCCGCAACGTCGATTAGTTTGCTAGCCGATGTGGTAGCCGTATCGTCAATTGAACTGTCAGCCTGTTTGTCGGTTGTTTTTGTTGTCTTCTTGGAAACCGAGCTGCCAGACGACTTCTTCTTGGTTTTTGCAGTCCGCTTTTTTGCTTTTTTTGCAGGTTGCTTCGCAGCCAAACTGTCAGTCACCTGTCTGTGTGTTTTCGGCGGATTGGGAACCCATCCTCGGGAAGTTGTCTTCTTGCGAAATCGTATGCTTTTTGTTCATCAGTACGACTATCACCATATGGTTTATCCACATCATTTATAAATCTTATAGGAACAACAACTAAATCCGGAGTGATCATCGGGAGTCATTTTCTTGGTATTTTTGTCAAAAAGACCTCTCATTTGAGAAACTTTTTCTTTGATACCAGCAGGCCACGATGTTTTCACAAGGGAAAGAGCATCCAATGAACTTTCCTCCTTGACAAAATCACTGTATTTAGCCAAGTATTTTGAATCGATTTTAGCGATGTTATCGATTCCCTGAACAACCTTATCCAACTCCTTACAGTTCTCACCTTGCACGCCACACGATTCCTCAACTTACTTAGCCAATCCCTCCAAATCGTTCGACAATCCCGCCAATTTTCCACTTTTCAACGCATCAATACTTTCTTTTCTCTTCTTGAGCAACTCGGTGACAGCTTGTTCCAATTGAATTTTTCCTTCCTTCAAGTTCCTGACGAACGGCGACCAGATCCACGATATAACCATACATTTTCAGATCTTGGACAAC</canonical>
            <polymorphic>TTTGTAGCATCTAGTTATAGGCCTCCAAATTCAAAAAGTGAATGAGTCATTTTTTAAACTAAAAATTTAAAAAACAACTAAATTCAACAACAACTTTATTTTCATCAAAAAAGGCAATCAAAGTCCAATAGCAGTTTTATCAGCCGATTCGTCCGCCGAATTATGAACGGATTTGCCAACCGAATTGTCAATCGATTTGTCAACCGATTTACCAGCTTCGTCGGCCGCAACGTCGATTAGTTTGCTAGCCGATGTGGTAGCCGTATCGTCAATTGAACTGTCAGCCTGTTTGTCGGTTGTTTTTGTTGTCTTCTTGGAAACCGAGCTGCCAGACGACTTCTTCTTGGTTTTTGCAGTCCGCTTTTTTGCTTTTTTTGCAGGTTGCTTCGCAGCCAAACTGTCAGTCACCTGTCTGTGTGTTTTCGGCGGATTGGGAACCCATCCTCGGGAAGTTGTCTTCTTGCGAAATCGTATGCTTTTTGTTCATCAGTACGACTATYACCATATGGTTTATCCACATCATTTATAAATCTTATAGGAACAACAACTAAATCCGGAGTGATCATCGGGAGTCATTTTCTTGGTATTTTTGTCAAAAAGACCTCTCATTTGAGAAACTTTTTCTTTGATACCAGCAGGCCACGATGTTTTCACAAGGGAAAGAGCATCCAATGAACTTTCCTCCTTGACAAAATCACTGTATTTAGCCAAGTATTTTGAATCGATTTTAGCGATGTTATCGATTCCCTGAACAACCTTATCCAACTCCTTACAGTTCTCACCTTGCACGCCACACGATTCCTCAACTTACTTAGCCAATCCCTCCAAATCGTTCGACAATCCCGCCAATTTTCCACTTTTCAACGCATCAATACTTTCTTTTCTCTTCTTGAGCAACTCGGTGACAGCTTGTTCCAATTGAATTTTTCCTTCCTTCAAGTTCCTGACGAACGGCGACCAGATCCACGATATAACCATACATTTTCAGATCTTGGACAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>216 151 84 82 81 62 61 48 44 44 40 34 16 11 10 7 5 2 2</canonical_bands>
                <polymorphic_bands>216 151 98 84 81 62 61 48 44 44 40 34 11 10 7 5 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAACTGTCAGTCACCTGT</pcr_primer_p1>
		<pcr_primer_p2>CTGCTGGTATCAAAGAAAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CCAAACTGTCAGTCACCTGTCTGTGTGTTTTCGGCGGATTGGGAACCCATCCTCGGGAAGTTGTCTTCTTGCGAAATCGTATGCTTTTTGTTCATCAGTACGACTATCACCATATGGTTTATCCACATCATTTATAAATCTTATAGGAACAACAACTAAATCCGGAGTGATCATCGGGAGTCATTTTCTTGGTATTTTTGTCAAAAAGACCTCTCATTTGAGAAACTTTTTCTTTGATACCAGCAG</canonical_amplicon>
		<polymorphic_amplicon>CCAAACTGTCAGTCACCTGTCTGTGTGTTTTCGGCGGATTGGGAACCCATCCTCGGGAAGTTGTCTTCTTGCGAAATCGTATGCTTTTTGTTCATCAGTACGACTATYACCATATGGTTTATCCACATCATTTATAAATCTTATAGGAACAACAACTAAATCCGGAGTGATCATCGGGAGTCATTTTCTTGGTATTTTTGTCAAAAAGACCTCTCATTTGAGAAACTTTTTCTTTGATACCAGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37274</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>292129</contig_pos>
        <strand>+</strand>
        <context>GAGCATCCAA[A/T]GAACTTTCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTTTGATACCAGCAGGCCACGATGTTTTCACAAGGGAAAGAGCATCCAA</left_flank>
        <right_flank>GAACTTTCCTCCTTGACAAAATCACTGTATTTAGCCAAGTATTTTGAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCCAACCGAATTGTCAATCGATTTGTCAACCGATTTACCAGCTTCGTCGGCCGCAACGTCGATTAGTTTGCTAGCCGATGTGGTAGCCGTATCGTCAATTGAACTGTCAGCCTGTTTGTCGGTTGTTTTTGTTGTCTTCTTGGAAACCGAGCTGCCAGACGACTTCTTCTTGGTTTTTGCAGTCCGCTTTTTTGCTTTTTTTGCAGGTTGCTTCGCAGCCAAACTGTCAGTCACCTGTCTGTGTGTTTTCGGCGGATTGGGAACCCATCCTCGGGAAGTTGTCTTCTTGCGAAATCGTATGCTTTTTGTTCATCAGTACGACTATCACCATATGGTTTATCCACATCATTTATAAATCTTATAGGAACAACAACTAAATCCGGAGTGATCATCGGGAGTCATTTTCTTGGTATTTTTGTCAAAAAGACCTCTCATTTGAGAAACTTTTTCTTTGATACCAGCAGGCCACGATGTTTTCACAAGGGAAAGAGCATCCAATGAACTTTCCTCCTTGACAAAATCACTGTATTTAGCCAAGTATTTTGAATCGATTTTAGCGATGTTATCGATTCCCTGAACAACCTTATCCAACTCCTTACAGTTCTCACCTTGCACGCCACACGATTCCTCAACTTACTTAGCCAATCCCTCCAAATCGTTCGACAATCCCGCCAATTTTCCACTTTTCAACGCATCAATACTTTCTTTTCTCTTCTTGAGCAACTCGGTGACAGCTTGTTCCAATTGAATTTTTCCTTCCTTCAAGTTCCTGACGAACGGCGACCAGATCCACGATATAACCATACATTTTCAGATCTTGGACAACAGCTGGAAGCAACTCATCTGAAATGAAAATTTTTAAAGATTATAAAATTGCAGCTTTTGGACATATTTGATAATTTGACAATGGAAATATTGTTTTACTGTTTCAATCAAATAAATCAAAAATTGCTAGAAATTGGTAGAGATTTGTAGAATGGAAATACAGGGTGAGGAATA</canonical>
            <polymorphic>TGCCAACCGAATTGTCAATCGATTTGTCAACCGATTTACCAGCTTCGTCGGCCGCAACGTCGATTAGTTTGCTAGCCGATGTGGTAGCCGTATCGTCAATTGAACTGTCAGCCTGTTTGTCGGTTGTTTTTGTTGTCTTCTTGGAAACCGAGCTGCCAGACGACTTCTTCTTGGTTTTTGCAGTCCGCTTTTTTGCTTTTTTTGCAGGTTGCTTCGCAGCCAAACTGTCAGTCACCTGTCTGTGTGTTTTCGGCGGATTGGGAACCCATCCTCGGGAAGTTGTCTTCTTGCGAAATCGTATGCTTTTTGTTCATCAGTACGACTATCACCATATGGTTTATCCACATCATTTATAAATCTTATAGGAACAACAACTAAATCCGGAGTGATCATCGGGAGTCATTTTCTTGGTATTTTTGTCAAAAAGACCTCTCATTTGAGAAACTTTTTCTTTGATACCAGCAGGCCACGATGTTTTCACAAGGGAAAGAGCATCCAAWGAACTTTCCTCCTTGACAAAATCACTGTATTTAGCCAAGTATTTTGAATCGATTTTAGCGATGTTATCGATTCCCTGAACAACCTTATCCAACTCCTTACAGTTCTCACCTTGCACGCCACACGATTCCTCAACTTACTTAGCCAATCCCTCCAAATCGTTCGACAATCCCGCCAATTTTCCACTTTTCAACGCATCAATACTTTCTTTTCTCTTCTTGAGCAACTCGGTGACAGCTTGTTCCAATTGAATTTTTCCTTCCTTCAAGTTCCTGACGAACGGCGACCAGATCCACGATATAACCATACATTTTCAGATCTTGGACAACAGCTGGAAGCAACTCATCTGAAATGAAAATTTTTAAAGATTATAAAATTGCAGCTTTTGGACATATTTGATAATTTGACAATGGAAATATTGTTTTACTGTTTCAATCAAATAAATCAAAAATTGCTAGAAATTGGTAGAGATTTGTAGAATGGAAATACAGGGTGAGGAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGTCATTTTCTTGGTATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGGCTAAGTAAGTTGAGGAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAGTCATTTTCTTGGTATTTTTGTCAAAAAGACCTCTCATTTGAGAAACTTTTTCTTTGATACCAGCAGGCCACGATGTTTTCACAAGGGAAAGAGCATCCAATGAACTTTCCTCCTTGACAAAATCACTGTATTTAGCCAAGTATTTTGAATCGATTTTAGCGATGTTATCGATTCCCTGAACAACCTTATCCAACTCCTTACAGTTCTCACCTTGCACGCCACACGATTCCTCAACTTACTTAGCCA</canonical_amplicon>
		<polymorphic_amplicon>GGAGTCATTTTCTTGGTATTTTTGTCAAAAAGACCTCTCATTTGAGAAACTTTTTCTTTGATACCAGCAGGCCACGATGTTTTCACAAGGGAAAGAGCATCCAAWGAACTTTCCTCCTTGACAAAATCACTGTATTTAGCCAAGTATTTTGAATCGATTTTAGCGATGTTATCGATTCCCTGAACAACCTTATCCAACTCCTTACAGTTCTCACCTTGCACGCCACACGATTCCTCAACTTACTTAGCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37275</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>295619</contig_pos>
        <strand>-</strand>
        <context>CCCAATCCGC[A/G]GAAAACACAC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATACGATTTCGCAAGAAGACAACTTCCCGAGGACTGGGTTCCCAATCCGC</left_flank>
        <right_flank>GAAAACACACAGACAGGTGACTGACAGTTTGGCTGCGAAGCAACCTGCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAATTGGAACAAGCTGTCACCGAGTTGCTCAAGAAGAGAAAAGAAAGTATTGATGCGTTGAAAAGTGGAAAATTGGCGGGATTGTCGAACGATTTGGAGGGATTGGCTAAGTAAGTTGAGGAATCGTGTGGCGTGCAAGGTGAGAACTGTAAGGAGTTGGATAAGGTTGTTCAGGGAATCGATAACATCGCTAAAATCGATTCAAAATACTTGGCTAAATACAGTGATTTTGTCAAGGAGGAAAGTTCATTGGATGCTCTTTCCCTTGTGAAAACATCGTGGCCTGCTGGTATCAAAGAAAAAGTTTCTCAAATGAGAGGTCTTTTTGACAAAAATACCAAGAAAATGACTCCCGATGATCACTCCGGATTTAGTTGTTGTTCCTATAAGATTTATAAATGATGTGGATAAACCATATGGTGATAGTCGTACTGATGAACAAAAAGCATACGATTTCGCAAGAAGACAACTTCCCGAGGACTGGGTTCCCAATCCGCCGAAAACACACAGACAGGTGACTGACAGTTTGGCTGCGAAGCAACCTGCAAAAAAAGCAAAAAAGCGGACTGCAAAAACCAAGAAGAAGTCGTCTGGCAGCTCGGTTTCCAAGAAGACAACAAAAACAACCGACAAACAGGCTGACAGTTCAATTGACGATACGGCTACCACATCGGCTAGCAAACTAATCGACGTTGCGGCCGACGAAGCTGGTAAATCGGTTGACAAATCGATTGACAATTCGGTTGGCAAATCCGTTCATAATTCGGCGGACGAATCGGCTGATAAAACTGCTATTGGACTTTGATTGCCTTTTTTGATGAAAATAAAGTTGTTGTTGAATTTAGTTGTTTTTTAAATTTTTAGTTTAAAAAATGACTCATTCACTTTTTTGAATTTGGAGGCCTATAACTAGATGCTACAAATAATTTCAATTTTGTAGTTTTAAAAAAATTTAACACAACGACAAATTTCGAAACCTGAAAAATACGTTCATTTTC</canonical>
            <polymorphic>TTCAATTGGAACAAGCTGTCACCGAGTTGCTCAAGAAGAGAAAAGAAAGTATTGATGCGTTGAAAAGTGGAAAATTGGCGGGATTGTCGAACGATTTGGAGGGATTGGCTAAGTAAGTTGAGGAATCGTGTGGCGTGCAAGGTGAGAACTGTAAGGAGTTGGATAAGGTTGTTCAGGGAATCGATAACATCGCTAAAATCGATTCAAAATACTTGGCTAAATACAGTGATTTTGTCAAGGAGGAAAGTTCATTGGATGCTCTTTCCCTTGTGAAAACATCGTGGCCTGCTGGTATCAAAGAAAAAGTTTCTCAAATGAGAGGTCTTTTTGACAAAAATACCAAGAAAATGACTCCCGATGATCACTCCGGATTTAGTTGTTGTTCCTATAAGATTTATAAATGATGTGGATAAACCATATGGTGATAGTCGTACTGATGAACAAAAAGCATACGATTTCGCAAGAAGACAACTTCCCGAGGACTGGGTTCCCAATCCGCRGAAAACACACAGACAGGTGACTGACAGTTTGGCTGCGAAGCAACCTGCAAAAAAAGCAAAAAAGCGGACTGCAAAAACCAAGAAGAAGTCGTCTGGCAGCTCGGTTTCCAAGAAGACAACAAAAACAACCGACAAACAGGCTGACAGTTCAATTGACGATACGGCTACCACATCGGCTAGCAAACTAATCGACGTTGCGGCCGACGAAGCTGGTAAATCGGTTGACAAATCGATTGACAATTCGGTTGGCAAATCCGTTCATAATTCGGCGGACGAATCGGCTGATAAAACTGCTATTGGACTTTGATTGCCTTTTTTGATGAAAATAAAGTTGTTGTTGAATTTAGTTGTTTTTTAAATTTTTAGTTTAAAAAATGACTCATTCACTTTTTTGAATTTGGAGGCCTATAACTAGATGCTACAAATAATTTCAATTTTGTAGTTTTAAAAAAATTTAACACAACGACAAATTTCGAAACCTGAAAAATACGTTCATTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAAATGACTCCCGATGAT</pcr_primer_p1>
		<pcr_primer_p2>GACGACTTCTTCTTGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGAAAATGACTCCCGATGATCACTCCGGATTTAGTTGTTGTTCCTATAAGATTTATAAATGATGTGGATAAACCATATGGTGATAGTCGTACTGATGAACAAAAAGCATACGATTTCGCAAGAAGACAACTTCCCGAGGACTGGGTTCCCAATCCGCCGAAAACACACAGACAGGTGACTGACAGTTTGGCTGCGAAGCAACCTGCAAAAAAAGCAAAAAAGCGGACTGCAAAAACCAAGAAGAAGTCGTC</canonical_amplicon>
		<polymorphic_amplicon>AGAAAATGACTCCCGATGATCACTCCGGATTTAGTTGTTGTTCCTATAAGATTTATAAATGATGTGGATAAACCATATGGTGATAGTCGTACTGATGAACAAAAAGCATACGATTTCGCAAGAAGACAACTTCCCGAGGACTGGGTTCCCAATCCGCRGAAAACACACAGACAGGTGACTGACAGTTTGGCTGCGAAGCAACCTGCAAAAAAAGCAAAAAAGCGGACTGCAAAAACCAAGAAGAAGTCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37276</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>295661</contig_pos>
        <strand>-</strand>
        <context>GCTGCGAAGC[G/T]ACCTGCWAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAATCCGCCGAAAACACACAGACAGGTGACTGACAGTTTGGCTGCGAAGC</left_flank>
        <right_flank>ACCTGCAAAAAAAGCAAAAAAGCGGACTGCAAAAACCAAGAAGAAGTCGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAAGTATTGATGCGTTGAAAAGTGGAAAATTGGCGGGATTGTCGAACGATTTGGAGGGATTGGCTAAGTAAGTTGAGGAATCGTGTGGCGTGCAAGGTGAGAACTGTAAGGAGTTGGATAAGGTTGTTCAGGGAATCGATAACATCGCTAAAATCGATTCAAAATACTTGGCTAAATACAGTGATTTTGTCAAGGAGGAAAGTTCATTGGATGCTCTTTCCCTTGTGAAAACATCGTGGCCTGCTGGTATCAAAGAAAAAGTTTCTCAAATGAGAGGTCTTTTTGACAAAAATACCAAGAAAATGACTCCCGATGATCACTCCGGATTTAGTTGTTGTTCCTATAAGATTTATAAATGATGTGGATAAACCATATGGTGATAGTCGTACTGATGAACAAAAAGCATACGATTTCGCAAGAAGACAACTTCCCGAGGACTGGGTTCCCAATCCGCCGAAAACACACAGACAGGTGACTGACAGTTTGGCTGCGAAGCAACCTGCAAAAAAAGCAAAAAAGCGGACTGCAAAAACCAAGAAGAAGTCGTCTGGCAGCTCGGTTTCCAAGAAGACAACAAAAACAACCGACAAACAGGCTGACAGTTCAATTGACGATACGGCTACCACATCGGCTAGCAAACTAATCGACGTTGCGGCCGACGAAGCTGGTAAATCGGTTGACAAATCGATTGACAATTCGGTTGGCAAATCCGTTCATAATTCGGCGGACGAATCGGCTGATAAAACTGCTATTGGACTTTGATTGCCTTTTTTGATGAAAATAAAGTTGTTGTTGAATTTAGTTGTTTTTTAAATTTTTAGTTTAAAAAATGACTCATTCACTTTTTTGAATTTGGAGGCCTATAACTAGATGCTACAAATAATTTCAATTTTGTAGTTTTAAAAAAATTTAACACAACGACAAATTTCGAAACCTGAAAAATACGTTCATTTTCCTTTTTTTTCCTGATTTTCATTGAGTTTTCTGTTATTTTTCC</canonical>
            <polymorphic>AAGAAAGTATTGATGCGTTGAAAAGTGGAAAATTGGCGGGATTGTCGAACGATTTGGAGGGATTGGCTAAGTAAGTTGAGGAATCGTGTGGCGTGCAAGGTGAGAACTGTAAGGAGTTGGATAAGGTTGTTCAGGGAATCGATAACATCGCTAAAATCGATTCAAAATACTTGGCTAAATACAGTGATTTTGTCAAGGAGGAAAGTTCATTGGATGCTCTTTCCCTTGTGAAAACATCGTGGCCTGCTGGTATCAAAGAAAAAGTTTCTCAAATGAGAGGTCTTTTTGACAAAAATACCAAGAAAATGACTCCCGATGATCACTCCGGATTTAGTTGTTGTTCCTATAAGATTTATAAATGATGTGGATAAACCATATGGTGATAGTCGTACTGATGAACAAAAAGCATACGATTTCGCAAGAAGACAACTTCCCGAGGACTGGGTTCCCAATCCGCCGAAAACACACAGACAGGTGACTGACAGTTTGGCTGCGAAGCKACCTGCAAAAAAAGCAAAAAAGCGGACTGCAAAAACCAAGAAGAAGTCGTCTGGCAGCTCGGTTTCCAAGAAGACAACAAAAACAACCGACAAACAGGCTGACAGTTCAATTGACGATACGGCTACCACATCGGCTAGCAAACTAATCGACGTTGCGGCCGACGAAGCTGGTAAATCGGTTGACAAATCGATTGACAATTCGGTTGGCAAATCCGTTCATAATTCGGCGGACGAATCGGCTGATAAAACTGCTATTGGACTTTGATTGCCTTTTTTGATGAAAATAAAGTTGTTGTTGAATTTAGTTGTTTTTTAAATTTTTAGTTTAAAAAATGACTCATTCACTTTTTTGAATTTGGAGGCCTATAACTAGATGCTACAAATAATTTCAATTTTGTAGTTTTAAAAAAATTTAACACAACGACAAATTTCGAAACCTGAAAAATACGTTCATTTTCCTTTTTTTTCCTGATTTTCATTGAGTTTTCTGTTATTTTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATAAATGATGTGGATAAACCAT</pcr_primer_p1>
		<pcr_primer_p2>GTTTGTCGGTTGTTTTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTATAAATGATGTGGATAAACCATATGGTGATAGTCGTACTGATGAACAAAAAGCATACGATTTCGCAAGAAGACAACTTCCCGAGGACTGGGTTCCCAATCCGCCGAAAACACACAGACAGGTGACTGACAGTTTGGCTGCGAAGCAACCTGCAAAAAAAGCAAAAAAGCGGACTGCAAAAACCAAGAAGAAGTCGTCTGGCAGCTCGGTTTCCAAGAAGACAACAAAAACAACCGACAAAC</canonical_amplicon>
		<polymorphic_amplicon>TTATAAATGATGTGGATAAACCATATGGTGATAGTCGTACTGATGAACAAAAAGCATACGATTTCGCAAGAAGACAACTTCCCGAGGACTGGGTTCCCAATCCGCCGAAAACACACAGACAGGTGACTGACAGTTTGGCTGCGAAGCKACCTGCAAAAAAAGCAAAAAAGCGGACTGCAAAAACCAAGAAGAAGTCGTCTGGCAGCTCGGTTTCCAAGAAGACAACAAAAACAACCGACAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37277</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>295668</contig_pos>
        <strand>-</strand>
        <context>AGCKACCTGC[A/T]AAAAAAGCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCGAAAACACACAGACAGGTGACTGACAGTTTGGCTGCGAAGCAACCTGC</left_flank>
        <right_flank>AAAAAAGCAAAAAAGCGGACTGCAAAAACCAAGAAGAAGTCGTCTGGCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTGATGCGTTGAAAAGTGGAAAATTGGCGGGATTGTCGAACGATTTGGAGGGATTGGCTAAGTAAGTTGAGGAATCGTGTGGCGTGCAAGGTGAGAACTGTAAGGAGTTGGATAAGGTTGTTCAGGGAATCGATAACATCGCTAAAATCGATTCAAAATACTTGGCTAAATACAGTGATTTTGTCAAGGAGGAAAGTTCATTGGATGCTCTTTCCCTTGTGAAAACATCGTGGCCTGCTGGTATCAAAGAAAAAGTTTCTCAAATGAGAGGTCTTTTTGACAAAAATACCAAGAAAATGACTCCCGATGATCACTCCGGATTTAGTTGTTGTTCCTATAAGATTTATAAATGATGTGGATAAACCATATGGTGATAGTCGTACTGATGAACAAAAAGCATACGATTTCGCAAGAAGACAACTTCCCGAGGACTGGGTTCCCAATCCGCCGAAAACACACAGACAGGTGACTGACAGTTTGGCTGCGAAGCAACCTGCAAAAAAAGCAAAAAAGCGGACTGCAAAAACCAAGAAGAAGTCGTCTGGCAGCTCGGTTTCCAAGAAGACAACAAAAACAACCGACAAACAGGCTGACAGTTCAATTGACGATACGGCTACCACATCGGCTAGCAAACTAATCGACGTTGCGGCCGACGAAGCTGGTAAATCGGTTGACAAATCGATTGACAATTCGGTTGGCAAATCCGTTCATAATTCGGCGGACGAATCGGCTGATAAAACTGCTATTGGACTTTGATTGCCTTTTTTGATGAAAATAAAGTTGTTGTTGAATTTAGTTGTTTTTTAAATTTTTAGTTTAAAAAATGACTCATTCACTTTTTTGAATTTGGAGGCCTATAACTAGATGCTACAAATAATTTCAATTTTGTAGTTTTAAAAAAATTTAACACAACGACAAATTTCGAAACCTGAAAAATACGTTCATTTTCCTTTTTTTTCCTGATTTTCATTGAGTTTTCTGTTATTTTTCCAACAAAA</canonical>
            <polymorphic>TATTGATGCGTTGAAAAGTGGAAAATTGGCGGGATTGTCGAACGATTTGGAGGGATTGGCTAAGTAAGTTGAGGAATCGTGTGGCGTGCAAGGTGAGAACTGTAAGGAGTTGGATAAGGTTGTTCAGGGAATCGATAACATCGCTAAAATCGATTCAAAATACTTGGCTAAATACAGTGATTTTGTCAAGGAGGAAAGTTCATTGGATGCTCTTTCCCTTGTGAAAACATCGTGGCCTGCTGGTATCAAAGAAAAAGTTTCTCAAATGAGAGGTCTTTTTGACAAAAATACCAAGAAAATGACTCCCGATGATCACTCCGGATTTAGTTGTTGTTCCTATAAGATTTATAAATGATGTGGATAAACCATATGGTGATAGTCGTACTGATGAACAAAAAGCATACGATTTCGCAAGAAGACAACTTCCCGAGGACTGGGTTCCCAATCCGCCGAAAACACACAGACAGGTGACTGACAGTTTGGCTGCGAAGCAACCTGCWAAAAAAGCAAAAAAGCGGACTGCAAAAACCAAGAAGAAGTCGTCTGGCAGCTCGGTTTCCAAGAAGACAACAAAAACAACCGACAAACAGGCTGACAGTTCAATTGACGATACGGCTACCACATCGGCTAGCAAACTAATCGACGTTGCGGCCGACGAAGCTGGTAAATCGGTTGACAAATCGATTGACAATTCGGTTGGCAAATCCGTTCATAATTCGGCGGACGAATCGGCTGATAAAACTGCTATTGGACTTTGATTGCCTTTTTTGATGAAAATAAAGTTGTTGTTGAATTTAGTTGTTTTTTAAATTTTTAGTTTAAAAAATGACTCATTCACTTTTTTGAATTTGGAGGCCTATAACTAGATGCTACAAATAATTTCAATTTTGTAGTTTTAAAAAAATTTAACACAACGACAAATTTCGAAACCTGAAAAATACGTTCATTTTCCTTTTTTTTCCTGATTTTCATTGAGTTTTCTGTTATTTTTCCAACAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>478 410 88 24</canonical_bands>
                <polymorphic_bands>478 434 88</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATAAATGATGTGGATAAACCAT</pcr_primer_p1>
		<pcr_primer_p2>GTTTGTCGGTTGTTTTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTATAAATGATGTGGATAAACCATATGGTGATAGTCGTACTGATGAACAAAAAGCATACGATTTCGCAAGAAGACAACTTCCCGAGGACTGGGTTCCCAATCCGCCGAAAACACACAGACAGGTGACTGACAGTTTGGCTGCGAAGCAACCTGCAAAAAAAGCAAAAAAGCGGACTGCAAAAACCAAGAAGAAGTCGTCTGGCAGCTCGGTTTCCAAGAAGACAACAAAAACAACCGACAAAC</canonical_amplicon>
		<polymorphic_amplicon>TTATAAATGATGTGGATAAACCATATGGTGATAGTCGTACTGATGAACAAAAAGCATACGATTTCGCAAGAAGACAACTTCCCGAGGACTGGGTTCCCAATCCGCCGAAAACACACAGACAGGTGACTGACAGTTTGGCTGCGAAGCAACCTGCWAAAAAAGCAAAAAAGCGGACTGCAAAAACCAAGAAGAAGTCGTCTGGCAGCTCGGTTTCCAAGAAGACAACAAAAACAACCGACAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37278</snp_id>
        <super_contig>c012001271.Contig1</super_contig>
        <contig_pos>295938</contig_pos>
        <strand>-</strand>
        <context>TGCCTTTTTT[A/C]ATGAAAATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCGGACGAATCGGCTGATAAAACTGCTATTGGACTTTGATTGCCTTTTTT</left_flank>
        <right_flank>ATGAAAATAAAGTTGTTGTTGAATTTAGTTGTTTTTTAAATTTTTAGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTCTTTTTGACAAAAATACCAAGAAAATGACTCCCGATGATCACTCCGGATTTAGTTGTTGTTCCTATAAGATTTATAAATGATGTGGATAAACCATATGGTGATAGTCGTACTGATGAACAAAAAGCATACGATTTCGCAAGAAGACAACTTCCCGAGGACTGGGTTCCCAATCCGCCGAAAACACACAGACAGGTGACTGACAGTTTGGCTGCGAAGCAACCTGCAAAAAAAGCAAAAAAGCGGACTGCAAAAACCAAGAAGAAGTCGTCTGGCAGCTCGGTTTCCAAGAAGACAACAAAAACAACCGACAAACAGGCTGACAGTTCAATTGACGATACGGCTACCACATCGGCTAGCAAACTAATCGACGTTGCGGCCGACGAAGCTGGTAAATCGGTTGACAAATCGATTGACAATTCGGTTGGCAAATCCGTTCATAATTCGGCGGACGAATCGGCTGATAAAACTGCTATTGGACTTTGATTGCCTTTTTTGATGAAAATAAAGTTGTTGTTGAATTTAGTTGTTTTTTAAATTTTTAGTTTAAAAAATGACTCATTCACTTTTTTGAATTTGGAGGCCTATAACTAGATGCTACAAATAATTTCAATTTTGTAGTTTTAAAAAAATTTAACACAACGACAAATTTCGAAACCTGAAAAATACGTTCATTTTCCTTTTTTTTCCTGATTTTCATTGAGTTTTCTGTTATTTTTCCAACAAAAAAAGCCGCAAAAAACTGCGCCGCAGCTTGCAAATCACTTTTTTTATTCCGACAATAACTCCCAATCCAAAGCTTTCCACAATCCCTGTTTACAACAACCCAATAGAGCAACTTTTTGTTTTTCACTTTTCTCCTAAAAATTAATGTGACGTCTTCAAAAATTCATGTGGAACCTGTCCCCCAAGTGTATTACTCCGTGCGTATGGATAGTCGATTCAGGCGTTAGAAATACAAGTCATCATAACAACTATGACCAACAATAATTTGCTCA</canonical>
            <polymorphic>AGGTCTTTTTGACAAAAATACCAAGAAAATGACTCCCGATGATCACTCCGGATTTAGTTGTTGTTCCTATAAGATTTATAAATGATGTGGATAAACCATATGGTGATAGTCGTACTGATGAACAAAAAGCATACGATTTCGCAAGAAGACAACTTCCCGAGGACTGGGTTCCCAATCCGCCGAAAACACACAGACAGGTGACTGACAGTTTGGCTGCGAAGCAACCTGCAAAAAAAGCAAAAAAGCGGACTGCAAAAACCAAGAAGAAGTCGTCTGGCAGCTCGGTTTCCAAGAAGACAACAAAAACAACCGACAAACAGGCTGACAGTTCAATTGACGATACGGCTACCACATCGGCTAGCAAACTAATCGACGTTGCGGCCGACGAAGCTGGTAAATCGGTTGACAAATCGATTGACAATTCGGTTGGCAAATCCGTTCATAATTCGGCGGACGAATCGGCTGATAAAACTGCTATTGGACTTTGATTGCCTTTTTTMATGAAAATAAAGTTGTTGTTGAATTTAGTTGTTTTTTAAATTTTTAGTTTAAAAAATGACTCATTCACTTTTTTGAATTTGGAGGCCTATAACTAGATGCTACAAATAATTTCAATTTTGTAGTTTTAAAAAAATTTAACACAACGACAAATTTCGAAACCTGAAAAATACGTTCATTTTCCTTTTTTTTCCTGATTTTCATTGAGTTTTCTGTTATTTTTCCAACAAAAAAAGCCGCAAAAAACTGCGCCGCAGCTTGCAAATCACTTTTTTTATTCCGACAATAACTCCCAATCCAAAGCTTTCCACAATCCCTGTTTACAACAACCCAATAGAGCAACTTTTTGTTTTTCACTTTTCTCCTAAAAATTAATGTGACGTCTTCAAAAATTCATGTGGAACCTGTCCCCCAAGTGTATTACTCCGTGCGTATGGATAGTCGATTCAGGCGTTAGAAATACAAGTCATCATAACAACTATGACCAACAATAATTTGCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATCGGCTAGCAAACTAATC</pcr_primer_p1>
		<pcr_primer_p2>TCTAGTTATAGGCCTCCAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACATCGGCTAGCAAACTAATCGACGTTGCGGCCGACGAAGCTGGTAAATCGGTTGACAAATCGATTGACAATTCGGTTGGCAAATCCGTTCATAATTCGGCGGACGAATCGGCTGATAAAACTGCTATTGGACTTTGATTGCCTTTTTTGATGAAAATAAAGTTGTTGTTGAATTTAGTTGTTTTTTAAATTTTTAGTTTAAAAAATGACTCATTCACTTTTTTGAATTTGGAGGCCTATAACTAGA</canonical_amplicon>
		<polymorphic_amplicon>ACATCGGCTAGCAAACTAATCGACGTTGCGGCCGACGAAGCTGGTAAATCGGTTGACAAATCGATTGACAATTCGGTTGGCAAATCCGTTCATAATTCGGCGGACGAATCGGCTGATAAAACTGCTATTGGACTTTGATTGCCTTTTTTMATGAAAATAAAGTTGTTGTTGAATTTAGTTGTTTTTTAAATTTTTAGTTTAAAAAATGACTCATTCACTTTTTTGAATTTGGAGGCCTATAACTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37279</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>25560</contig_pos>
        <strand></strand>
        <context>TTGGAGATTT[T/C]GGAAAATCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTGAATGGCTCTCTGATTTTTTGGTTCATTTTTGTTGTAATTGGAGATTT</left_flank>
        <right_flank>GGAAAATCCTGAAATGACAAATCTTGTTTTACTGATCAGTGAATAGACAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGAAATTCAAGATCAAAACATAGAAGTCGCGGGAAAACATGACAGGCCTAGATTTAGAAAAAAAAAGTGTTATGACGAAAAAAATTATTTGAATTTTGTTTTTCCTGTTCGAACTACAGTTTTCTCTCAAACCAGGATTTGTGTATTTTTAGATCGGAATTCCTAGAATAAACGAATTTCGGAATTTCTTTAAATTCTGAGATCCTGAGATTCTGAGATTCTGAGATTCAGAGATTCAGAGATTCTGAGATTCTGAAATTCTGCGATTCAGAGATTCAGAGATTCTGAGATTCTGAGATCCTGGGGTTCTTGAAATTTTTCGAATCTCTGAAAATGACTCAATTTCTCAATCTGAAAGTACTTGAAACGTCCTCAAACCCGTTTCAAAAATGACCCAAATTCTCTTATTTCGAACCACAATAGCACTCGAGGAATGGGATGCTCTTTTTGAATGGCTCTCTGATTTTTTGGTTCATTTTTGTTGTAATTGGAGATTTTGGAAAATCCTGAAATGACAAATCTTGTTTTACTGATCAGTGAATAGACAAAATCATTCTCTTATTTTGGGTTGTCTGAAACTTGGATAAAAATGATCAGATTTAGTTGAAACTTAATTTTTCGAATTCAATGGGTCACGAGCTTCAAAATGAGTATAAACACGGCTAGCCGGCTCCGCTCACTTCGACTTTTGAAGTTAAAGGCTCATAGAGGTCTGAAAAATGAATTTCAGGGAAAGTAGGTCATGATTATATTCATTTTGAAGCGTTTGACGTGATAAATGAAATGTTTGAAAATTTTAAAAATTCCGGCGAAAAGTAACCAAGTTACGGTAGTTTTTGTTGTCTAGATAACTGGAAAGATCAAGCTAAAAAATGAAATTTATAAAAATCTTTTAAGAGAAGTTTATCATAATATCAAAGACATTTTATCAGTTGACACATTTTTTTTTCATTAAAAATCAATACCCAAGTTTTTGAAATTGTCACCTAAAAAATTGA</canonical>
            <polymorphic>ATGGAAATTCAAGATCAAAACATAGAAGTCGCGGGAAAACATGACAGGCCTAGATTTAGAAAAAAAAAGTGTTATGACGAAAAAAATTATTTGAATTTTGTTTTTCCTGTTCGAACTACAGTTTTCTCTCAAACCAGGATTTGTGTATTTTTAGATCGGAATTCCTAGAATAAACGAATTTCGGAATTTCTTTAAATTCTGAGATCCTGAGATTCTGAGATTCTGAGATTCAGAGATTCAGAGATTCTGAGATTCTGAAATTCTGCGATTCAGAGATTCAGAGATTCTGAGATTCTGAGATCCTGGGGTTCTTGAAATTTTTCGAATCTCTGAAAATGACTCAATTTCTCAATCTGAAAGTACTTGAAACGTCCTCAAACCCGTTTCAAAAATGACCCAAATTCTCTTATTTCGAACCACAATAGCACTCGAGGAATGGGATGCTCTTTTTGAATGGCTCTCTGATTTTTTGGTTCATTTTTGTTGTAATTGGAGATTTYGGAAAATCCTGAAATGACAAATCTTGTTTTACTGATCAGTGAATAGACAAAATCATTCTCTTATTTTGGGTTGTCTGAAACTTGGATAAAAATGATCAGATTTAGTTGAAACTTAATTTTTCGAATTCAATGGGTCACGAGCTTCAAAATGAGTATAAACACGGCTAGCCGGCTCCGCTCACTTCGACTTTTGAAGTTAAAGGCTCATAGAGGTCTGAAAAATGAATTTCAGGGAAAGTAGGTCATGATTATATTCATTTTGAAGCGTTTGACGTGATAAATGAAATGTTTGAAAATTTTAAAAATTCCGGCGAAAAGTAACCAAGTTACGGTAGTTTTTGTTGTCTAGATAACTGGAAAGATCAAGCTAAAAAATGAAATTTATAAAAATCTTTTAAGAGAAGTTTATCATAATATCAAAGACATTTTATCAGTTGACACATTTTTTTTTCATTAAAAATCAATACCCAAGTTTTTGAAATTGTCACCTAAAAAATTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGACCCAAATTCTCTTAT</pcr_primer_p1>
		<pcr_primer_p2>TCTGATCATTTTTATCCAAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>213</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGACCCAAATTCTCTTATTTCGAACCACAATAGCACTCGAGGAATGGGATGCTCTTTTTGAATGGCTCTCTGATTTTTTGGTTCATTTTTGTTGTAATTGGAGATTTTGGAAAATCCTGAAATGACAAATCTTGTTTTACTGATCAGTGAATAGACAAAATCATTCTCTTATTTTGGGTTGTCTGAAACTTGGATAAAAATGATCAGA</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGACCCAAATTCTCTTATTTCGAACCACAATAGCACTCGAGGAATGGGATGCTCTTTTTGAATGGCTCTCTGATTTTTTGGTTCATTTTTGTTGTAATTGGAGATTTYGGAAAATCCTGAAATGACAAATCTTGTTTTACTGATCAGTGAATAGACAAAATCATTCTCTTATTTTGGGTTGTCTGAAACTTGGATAAAAATGATCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37280</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>25622</contig_pos>
        <strand></strand>
        <context>ATCATTCTCT[T/A]ATTTTGGGYT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAATGACAAATCTTGTTTTACTGATCAGTGAATAGACAAAATCATTCTCT</left_flank>
        <right_flank>ATTTTGGGTTGTCTGAAACTTGGATAAAAATGATCAGATTTAGTTGAAAC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAGTGTTATGACGAAAAAAATTATTTGAATTTTGTTTTTCCTGTTCGAACTACAGTTTTCTCTCAAACCAGGATTTGTGTATTTTTAGATCGGAATTCCTAGAATAAACGAATTTCGGAATTTCTTTAAATTCTGAGATCCTGAGATTCTGAGATTCTGAGATTCAGAGATTCAGAGATTCTGAGATTCTGAAATTCTGCGATTCAGAGATTCAGAGATTCTGAGATTCTGAGATCCTGGGGTTCTTGAAATTTTTCGAATCTCTGAAAATGACTCAATTTCTCAATCTGAAAGTACTTGAAACGTCCTCAAACCCGTTTCAAAAATGACCCAAATTCTCTTATTTCGAACCACAATAGCACTCGAGGAATGGGATGCTCTTTTTGAATGGCTCTCTGATTTTTTGGTTCATTTTTGTTGTAATTGGAGATTTTGGAAAATCCTGAAATGACAAATCTTGTTTTACTGATCAGTGAATAGACAAAATCATTCTCTTATTTTGGGTTGTCTGAAACTTGGATAAAAATGATCAGATTTAGTTGAAACTTAATTTTTCGAATTCAATGGGTCACGAGCTTCAAAATGAGTATAAACACGGCTAGCCGGCTCCGCTCACTTCGACTTTTGAAGTTAAAGGCTCATAGAGGTCTGAAAAATGAATTTCAGGGAAAGTAGGTCATGATTATATTCATTTTGAAGCGTTTGACGTGATAAATGAAATGTTTGAAAATTTTAAAAATTCCGGCGAAAAGTAACCAAGTTACGGTAGTTTTTGTTGTCTAGATAACTGGAAAGATCAAGCTAAAAAATGAAATTTATAAAAATCTTTTAAGAGAAGTTTATCATAATATCAAAGACATTTTATCAGTTGACACATTTTTTTTTCATTAAAAATCAATACCCAAGTTTTTGAAATTGTCACCTAAAAAATTGATAAATCAAACATTATTTCAAAATACCAAAACATATAATTTGGAATTTATGAACACCTAAATT</canonical>
            <polymorphic>AAAAAAGTGTTATGACGAAAAAAATTATTTGAATTTTGTTTTTCCTGTTCGAACTACAGTTTTCTCTCAAACCAGGATTTGTGTATTTTTAGATCGGAATTCCTAGAATAAACGAATTTCGGAATTTCTTTAAATTCTGAGATCCTGAGATTCTGAGATTCTGAGATTCAGAGATTCAGAGATTCTGAGATTCTGAAATTCTGCGATTCAGAGATTCAGAGATTCTGAGATTCTGAGATCCTGGGGTTCTTGAAATTTTTCGAATCTCTGAAAATGACTCAATTTCTCAATCTGAAAGTACTTGAAACGTCCTCAAACCCGTTTCAAAAATGACCCAAATTCTCTTATTTCGAACCACAATAGCACTCGAGGAATGGGATGCTCTTTTTGAATGGCTCTCTGATTTTTTGGTTCATTTTTGTTGTAATTGGAGATTTTGGAAAATCCTGAAATGACAAATCTTGTTTTACTGATCAGTGAATAGACAAAATCATTCTCTWATTTTGGGTTGTCTGAAACTTGGATAAAAATGATCAGATTTAGTTGAAACTTAATTTTTCGAATTCAATGGGTCACGAGCTTCAAAATGAGTATAAACACGGCTAGCCGGCTCCGCTCACTTCGACTTTTGAAGTTAAAGGCTCATAGAGGTCTGAAAAATGAATTTCAGGGAAAGTAGGTCATGATTATATTCATTTTGAAGCGTTTGACGTGATAAATGAAATGTTTGAAAATTTTAAAAATTCCGGCGAAAAGTAACCAAGTTACGGTAGTTTTTGTTGTCTAGATAACTGGAAAGATCAAGCTAAAAAATGAAATTTATAAAAATCTTTTAAGAGAAGTTTATCATAATATCAAAGACATTTTATCAGTTGACACATTTTTTTTTCATTAAAAATCAATACCCAAGTTTTTGAAATTGTCACCTAAAAAATTGATAAATCAAACATTATTTCAAAATACCAAAACATATAATTTGGAATTTATGAACACCTAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTGAAATGACAAATCTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>AGCTTGATCTTTCCAGTTATCTA</pcr_primer_p2>
		<pcr_amplicon_size>362</pcr_amplicon_size>
		<canonical_amplicon>CCTGAAATGACAAATCTTGTTTTACTGATCAGTGAATAGACAAAATCATTCTCTTATTTTGGGTTGTCTGAAACTTGGATAAAAATGATCAGATTTAGTTGAAACTTAATTTTTCGAATTCAATGGGTCACGAGCTTCAAAATGAGTATAAACACGGCTAGCCGGCTCCGCTCACTTCGACTTTTGAAGTTAAAGGCTCATAGAGGTCTGAAAAATGAATTTCAGGGAAAGTAGGTCATGATTATATTCATTTTGAAGCGTTTGACGTGATAAATGAAATGTTTGAAAATTTTAAAAATTCCGGCGAAAAGTAACCAAGTTACGGTAGTTTTTGTTGTCTAGATAACTGGAAAGATCAAGCT</canonical_amplicon>
		<polymorphic_amplicon>CCTGAAATGACAAATCTTGTTTTACTGATCAGTGAATAGACAAAATCATTCTCTWATTTTGGGTTGTCTGAAACTTGGATAAAAATGATCAGATTTAGTTGAAACTTAATTTTTCGAATTCAATGGGTCACGAGCTTCAAAATGAGTATAAACACGGCTAGCCGGCTCCGCTCACTTCGACTTTTGAAGTTAAAGGCTCATAGAGGTCTGAAAAATGAATTTCAGGGAAAGTAGGTCATGATTATATTCATTTTGAAGCGTTTGACGTGATAAATGAAATGTTTGAAAATTTTAAAAATTCCGGCGAAAAGTAACCAAGTTACGGTAGTTTTTGTTGTCTAGATAACTGGAAAGATCAAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37281</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>25631</contig_pos>
        <strand></strand>
        <context>TWATTTTGGG[T/C]TGTCTGAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATCTTGTTTTACTGATCAGTGAATAGACAAAATCATTCTCTTATTTTGGG</left_flank>
        <right_flank>TGTCTGAAACTTGGATAAAAATGATCAGATTTAGTTGAAACTTAATTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATGACGAAAAAAATTATTTGAATTTTGTTTTTCCTGTTCGAACTACAGTTTTCTCTCAAACCAGGATTTGTGTATTTTTAGATCGGAATTCCTAGAATAAACGAATTTCGGAATTTCTTTAAATTCTGAGATCCTGAGATTCTGAGATTCTGAGATTCAGAGATTCAGAGATTCTGAGATTCTGAAATTCTGCGATTCAGAGATTCAGAGATTCTGAGATTCTGAGATCCTGGGGTTCTTGAAATTTTTCGAATCTCTGAAAATGACTCAATTTCTCAATCTGAAAGTACTTGAAACGTCCTCAAACCCGTTTCAAAAATGACCCAAATTCTCTTATTTCGAACCACAATAGCACTCGAGGAATGGGATGCTCTTTTTGAATGGCTCTCTGATTTTTTGGTTCATTTTTGTTGTAATTGGAGATTTTGGAAAATCCTGAAATGACAAATCTTGTTTTACTGATCAGTGAATAGACAAAATCATTCTCTTATTTTGGGTTGTCTGAAACTTGGATAAAAATGATCAGATTTAGTTGAAACTTAATTTTTCGAATTCAATGGGTCACGAGCTTCAAAATGAGTATAAACACGGCTAGCCGGCTCCGCTCACTTCGACTTTTGAAGTTAAAGGCTCATAGAGGTCTGAAAAATGAATTTCAGGGAAAGTAGGTCATGATTATATTCATTTTGAAGCGTTTGACGTGATAAATGAAATGTTTGAAAATTTTAAAAATTCCGGCGAAAAGTAACCAAGTTACGGTAGTTTTTGTTGTCTAGATAACTGGAAAGATCAAGCTAAAAAATGAAATTTATAAAAATCTTTTAAGAGAAGTTTATCATAATATCAAAGACATTTTATCAGTTGACACATTTTTTTTTCATTAAAAATCAATACCCAAGTTTTTGAAATTGTCACCTAAAAAATTGATAAATCAAACATTATTTCAAAATACCAAAACATATAATTTGGAATTTATGAACACCTAAATTATTACTTTT</canonical>
            <polymorphic>TTATGACGAAAAAAATTATTTGAATTTTGTTTTTCCTGTTCGAACTACAGTTTTCTCTCAAACCAGGATTTGTGTATTTTTAGATCGGAATTCCTAGAATAAACGAATTTCGGAATTTCTTTAAATTCTGAGATCCTGAGATTCTGAGATTCTGAGATTCAGAGATTCAGAGATTCTGAGATTCTGAAATTCTGCGATTCAGAGATTCAGAGATTCTGAGATTCTGAGATCCTGGGGTTCTTGAAATTTTTCGAATCTCTGAAAATGACTCAATTTCTCAATCTGAAAGTACTTGAAACGTCCTCAAACCCGTTTCAAAAATGACCCAAATTCTCTTATTTCGAACCACAATAGCACTCGAGGAATGGGATGCTCTTTTTGAATGGCTCTCTGATTTTTTGGTTCATTTTTGTTGTAATTGGAGATTTTGGAAAATCCTGAAATGACAAATCTTGTTTTACTGATCAGTGAATAGACAAAATCATTCTCTTATTTTGGGYTGTCTGAAACTTGGATAAAAATGATCAGATTTAGTTGAAACTTAATTTTTCGAATTCAATGGGTCACGAGCTTCAAAATGAGTATAAACACGGCTAGCCGGCTCCGCTCACTTCGACTTTTGAAGTTAAAGGCTCATAGAGGTCTGAAAAATGAATTTCAGGGAAAGTAGGTCATGATTATATTCATTTTGAAGCGTTTGACGTGATAAATGAAATGTTTGAAAATTTTAAAAATTCCGGCGAAAAGTAACCAAGTTACGGTAGTTTTTGTTGTCTAGATAACTGGAAAGATCAAGCTAAAAAATGAAATTTATAAAAATCTTTTAAGAGAAGTTTATCATAATATCAAAGACATTTTATCAGTTGACACATTTTTTTTTCATTAAAAATCAATACCCAAGTTTTTGAAATTGTCACCTAAAAAATTGATAAATCAAACATTATTTCAAAATACCAAAACATATAATTTGGAATTTATGAACACCTAAATTATTACTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGACAAATCTTGTTTTACTGA</pcr_primer_p1>
		<pcr_primer_p2>AGCTTGATCTTTCCAGTTATCTA</pcr_primer_p2>
		<pcr_amplicon_size>358</pcr_amplicon_size>
		<canonical_amplicon>AAATGACAAATCTTGTTTTACTGATCAGTGAATAGACAAAATCATTCTCTTATTTTGGGTTGTCTGAAACTTGGATAAAAATGATCAGATTTAGTTGAAACTTAATTTTTCGAATTCAATGGGTCACGAGCTTCAAAATGAGTATAAACACGGCTAGCCGGCTCCGCTCACTTCGACTTTTGAAGTTAAAGGCTCATAGAGGTCTGAAAAATGAATTTCAGGGAAAGTAGGTCATGATTATATTCATTTTGAAGCGTTTGACGTGATAAATGAAATGTTTGAAAATTTTAAAAATTCCGGCGAAAAGTAACCAAGTTACGGTAGTTTTTGTTGTCTAGATAACTGGAAAGATCAAGCT</canonical_amplicon>
		<polymorphic_amplicon>AAATGACAAATCTTGTTTTACTGATCAGTGAATAGACAAAATCATTCTCTTATTTTGGGYTGTCTGAAACTTGGATAAAAATGATCAGATTTAGTTGAAACTTAATTTTTCGAATTCAATGGGTCACGAGCTTCAAAATGAGTATAAACACGGCTAGCCGGCTCCGCTCACTTCGACTTTTGAAGTTAAAGGCTCATAGAGGTCTGAAAAATGAATTTCAGGGAAAGTAGGTCATGATTATATTCATTTTGAAGCGTTTGACGTGATAAATGAAATGTTTGAAAATTTTAAAAATTCCGGCGAAAAGTAACCAAGTTACGGTAGTTTTTGTTGTCTAGATAACTGGAAAGATCAAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37282</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>25674</contig_pos>
        <strand></strand>
        <context>agttgaaact[T/C]aatttttcga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTGGGTTGTCTGAAACTTGGATAAAAATGATCAGATTTAGTTGAAACT</left_flank>
        <right_flank>AATTTTTCGAATTCAATGGGTCACGAGCTTCAAAATGAGTATAAACACGG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTACAGTTTTCTCTCAAACCAGGATTTGTGTATTTTTAGATCGGAATTCCTAGAATAAACGAATTTCGGAATTTCTTTAAATTCTGAGATCCTGAGATTCTGAGATTCTGAGATTCAGAGATTCAGAGATTCTGAGATTCTGAAATTCTGCGATTCAGAGATTCAGAGATTCTGAGATTCTGAGATCCTGGGGTTCTTGAAATTTTTCGAATCTCTGAAAATGACTCAATTTCTCAATCTGAAAGTACTTGAAACGTCCTCAAACCCGTTTCAAAAATGACCCAAATTCTCTTATTTCGAACCACAATAGCACTCGAGGAATGGGATGCTCTTTTTGAATGGCTCTCTGATTTTTTGGTTCATTTTTGTTGTAATTGGAGATTTTGGAAAATCCTGAAATGACAAATCTTGTTTTACTGATCAGTGAATAGACAAAATCATTCTCTTATTTTGGGTTGTCTGAAACTTGGATAAAAATGATCAGATTTAGTTGAAACTTAATTTTTCGAATTCAATGGGTCACGAGCTTCAAAATGAGTATAAACACGGCTAGCCGGCTCCGCTCACTTCGACTTTTGAAGTTAAAGGCTCATAGAGGTCTGAAAAATGAATTTCAGGGAAAGTAGGTCATGATTATATTCATTTTGAAGCGTTTGACGTGATAAATGAAATGTTTGAAAATTTTAAAAATTCCGGCGAAAAGTAACCAAGTTACGGTAGTTTTTGTTGTCTAGATAACTGGAAAGATCAAGCTAAAAAATGAAATTTATAAAAATCTTTTAAGAGAAGTTTATCATAATATCAAAGACATTTTATCAGTTGACACATTTTTTTTTCATTAAAAATCAATACCCAAGTTTTTGAAATTGTCACCTAAAAAATTGATAAATCAAACATTATTTCAAAATACCAAAACATATAATTTGGAATTTATGAACACCTAAATTATTACTTTTGAAAAATATTTATTTTTCAAACCTCGCTTAAATTTTAAACCAG</canonical>
            <polymorphic>ACTACAGTTTTCTCTCAAACCAGGATTTGTGTATTTTTAGATCGGAATTCCTAGAATAAACGAATTTCGGAATTTCTTTAAATTCTGAGATCCTGAGATTCTGAGATTCTGAGATTCAGAGATTCAGAGATTCTGAGATTCTGAAATTCTGCGATTCAGAGATTCAGAGATTCTGAGATTCTGAGATCCTGGGGTTCTTGAAATTTTTCGAATCTCTGAAAATGACTCAATTTCTCAATCTGAAAGTACTTGAAACGTCCTCAAACCCGTTTCAAAAATGACCCAAATTCTCTTATTTCGAACCACAATAGCACTCGAGGAATGGGATGCTCTTTTTGAATGGCTCTCTGATTTTTTGGTTCATTTTTGTTGTAATTGGAGATTTTGGAAAATCCTGAAATGACAAATCTTGTTTTACTGATCAGTGAATAGACAAAATCATTCTCTTATTTTGGGTTGTCTGAAACTTGGATAAAAATGATCAGATTTAGTTGAAACTYAATTTTTCGAATTCAATGGGTCACGAGCTTCAAAATGAGTATAAACACGGCTAGCCGGCTCCGCTCACTTCGACTTTTGAAGTTAAAGGCTCATAGAGGTCTGAAAAATGAATTTCAGGGAAAGTAGGTCATGATTATATTCATTTTGAAGCGTTTGACGTGATAAATGAAATGTTTGAAAATTTTAAAAATTCCGGCGAAAAGTAACCAAGTTACGGTAGTTTTTGTTGTCTAGATAACTGGAAAGATCAAGCTAAAAAATGAAATTTATAAAAATCTTTTAAGAGAAGTTTATCATAATATCAAAGACATTTTATCAGTTGACACATTTTTTTTTCATTAAAAATCAATACCCAAGTTTTTGAAATTGTCACCTAAAAAATTGATAAATCAAACATTATTTCAAAATACCAAAACATATAATTTGGAATTTATGAACACCTAAATTATTACTTTTGAAAAATATTTATTTTTCAAACCTCGCTTAAATTTTAAACCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>421 145 102 96 84 78 59 8 7</canonical_bands>
                <polymorphic_bands>505 145 102 96 78 59 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTGAATAGACAAAATCATTCTC</pcr_primer_p1>
		<pcr_primer_p2>TTAGCTTGATCTTTCCAGTTATC</pcr_primer_p2>
		<pcr_amplicon_size>335</pcr_amplicon_size>
		<canonical_amplicon>CAGTGAATAGACAAAATCATTCTCTTATTTTGGGTTGTCTGAAACTTGGATAAAAATGATCAGATTTAGTTGAAACTTAATTTTTCGAATTCAATGGGTCACGAGCTTCAAAATGAGTATAAACACGGCTAGCCGGCTCCGCTCACTTCGACTTTTGAAGTTAAAGGCTCATAGAGGTCTGAAAAATGAATTTCAGGGAAAGTAGGTCATGATTATATTCATTTTGAAGCGTTTGACGTGATAAATGAAATGTTTGAAAATTTTAAAAATTCCGGCGAAAAGTAACCAAGTTACGGTAGTTTTTGTTGTCTAGATAACTGGAAAGATCAAGCTAA</canonical_amplicon>
		<polymorphic_amplicon>CAGTGAATAGACAAAATCATTCTCTTATTTTGGGTTGTCTGAAACTTGGATAAAAATGATCAGATTTAGTTGAAACTYAATTTTTCGAATTCAATGGGTCACGAGCTTCAAAATGAGTATAAACACGGCTAGCCGGCTCCGCTCACTTCGACTTTTGAAGTTAAAGGCTCATAGAGGTCTGAAAAATGAATTTCAGGGAAAGTAGGTCATGATTATATTCATTTTGAAGCGTTTGACGTGATAAATGAAATGTTTGAAAATTTTAAAAATTCCGGCGAAAAGTAACCAAGTTACGGTAGTTTTTGTTGTCTAGATAACTGGAAAGATCAAGCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37283</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>25814</contig_pos>
        <strand></strand>
        <context>catgattata[T/A]tcattttgaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CTCATAGAGGTCTGAAAAATGAATTTCAGGGAAAGTAGGTCATGATTATA</left_flank>
        <right_flank>TCATTTTGAAGCGTTTGACGTGATAAATGAAATGTTTGAAAATTTTAAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAAATTCTGCGATTCAGAGATTCAGAGATTCTGAGATTCTGAGATCCTGGGGTTCTTGAAATTTTTCGAATCTCTGAAAATGACTCAATTTCTCAATCTGAAAGTACTTGAAACGTCCTCAAACCCGTTTCAAAAATGACCCAAATTCTCTTATTTCGAACCACAATAGCACTCGAGGAATGGGATGCTCTTTTTGAATGGCTCTCTGATTTTTTGGTTCATTTTTGTTGTAATTGGAGATTTTGGAAAATCCTGAAATGACAAATCTTGTTTTACTGATCAGTGAATAGACAAAATCATTCTCTTATTTTGGGTTGTCTGAAACTTGGATAAAAATGATCAGATTTAGTTGAAACTTAATTTTTCGAATTCAATGGGTCACGAGCTTCAAAATGAGTATAAACACGGCTAGCCGGCTCCGCTCACTTCGACTTTTGAAGTTAAAGGCTCATAGAGGTCTGAAAAATGAATTTCAGGGAAAGTAGGTCATGATTATATTCATTTTGAAGCGTTTGACGTGATAAATGAAATGTTTGAAAATTTTAAAAATTCCGGCGAAAAGTAACCAAGTTACGGTAGTTTTTGTTGTCTAGATAACTGGAAAGATCAAGCTAAAAAATGAAATTTATAAAAATCTTTTAAGAGAAGTTTATCATAATATCAAAGACATTTTATCAGTTGACACATTTTTTTTTCATTAAAAATCAATACCCAAGTTTTTGAAATTGTCACCTAAAAAATTGATAAATCAAACATTATTTCAAAATACCAAAACATATAATTTGGAATTTATGAACACCTAAATTATTACTTTTGAAAAATATTTATTTTTCAAACCTCGCTTAAATTTTAAACCAGTTATAGCAATGAGTACTTTAAGACCAAATTATCTAATCAAAAATTAAAAATAGAAAATTAGTATTTAACAGAAACCATTGTATGATCTGTATGAGTTGCCTTTTCCAATTTTCGATTCTCGAATACTGTAACTGGGCCAA</canonical>
            <polymorphic>CTGAAATTCTGCGATTCAGAGATTCAGAGATTCTGAGATTCTGAGATCCTGGGGTTCTTGAAATTTTTCGAATCTCTGAAAATGACTCAATTTCTCAATCTGAAAGTACTTGAAACGTCCTCAAACCCGTTTCAAAAATGACCCAAATTCTCTTATTTCGAACCACAATAGCACTCGAGGAATGGGATGCTCTTTTTGAATGGCTCTCTGATTTTTTGGTTCATTTTTGTTGTAATTGGAGATTTTGGAAAATCCTGAAATGACAAATCTTGTTTTACTGATCAGTGAATAGACAAAATCATTCTCTTATTTTGGGTTGTCTGAAACTTGGATAAAAATGATCAGATTTAGTTGAAACTTAATTTTTCGAATTCAATGGGTCACGAGCTTCAAAATGAGTATAAACACGGCTAGCCGGCTCCGCTCACTTCGACTTTTGAAGTTAAAGGCTCATAGAGGTCTGAAAAATGAATTTCAGGGAAAGTAGGTCATGATTATAWTCATTTTGAAGCGTTTGACGTGATAAATGAAATGTTTGAAAATTTTAAAAATTCCGGCGAAAAGTAACCAAGTTACGGTAGTTTTTGTTGTCTAGATAACTGGAAAGATCAAGCTAAAAAATGAAATTTATAAAAATCTTTTAAGAGAAGTTTATCATAATATCAAAGACATTTTATCAGTTGACACATTTTTTTTTCATTAAAAATCAATACCCAAGTTTTTGAAATTGTCACCTAAAAAATTGATAAATCAAACATTATTTCAAAATACCAAAACATATAATTTGGAATTTATGAACACCTAAATTATTACTTTTGAAAAATATTTATTTTTCAAACCTCGCTTAAATTTTAAACCAGTTATAGCAATGAGTACTTTAAGACCAAATTATCTAATCAAAAATTAAAAATAGAAAATTAGTATTTAACAGAAACCATTGTATGATCTGTATGAGTTGCCTTTTCCAATTTTCGATTCTCGAATACTGTAACTGGGCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTTGGATAAAAATGATCAGA</pcr_primer_p1>
		<pcr_primer_p2>AGCTTGATCTTTCCAGTTATCTA</pcr_primer_p2>
		<pcr_amplicon_size>292</pcr_amplicon_size>
		<canonical_amplicon>AAACTTGGATAAAAATGATCAGATTTAGTTGAAACTTAATTTTTCGAATTCAATGGGTCACGAGCTTCAAAATGAGTATAAACACGGCTAGCCGGCTCCGCTCACTTCGACTTTTGAAGTTAAAGGCTCATAGAGGTCTGAAAAATGAATTTCAGGGAAAGTAGGTCATGATTATATTCATTTTGAAGCGTTTGACGTGATAAATGAAATGTTTGAAAATTTTAAAAATTCCGGCGAAAAGTAACCAAGTTACGGTAGTTTTTGTTGTCTAGATAACTGGAAAGATCAAGCT</canonical_amplicon>
		<polymorphic_amplicon>AAACTTGGATAAAAATGATCAGATTTAGTTGAAACTTAATTTTTCGAATTCAATGGGTCACGAGCTTCAAAATGAGTATAAACACGGCTAGCCGGCTCCGCTCACTTCGACTTTTGAAGTTAAAGGCTCATAGAGGTCTGAAAAATGAATTTCAGGGAAAGTAGGTCATGATTATAWTCATTTTGAAGCGTTTGACGTGATAAATGAAATGTTTGAAAATTTTAAAAATTCCGGCGAAAAGTAACCAAGTTACGGTAGTTTTTGTTGTCTAGATAACTGGAAAGATCAAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37284</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>25848</contig_pos>
        <strand></strand>
        <context>taaatgaaat[G/T]tttraaaatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTAGGTCATGATTATATTCATTTTGAAGCGTTTGACGTGATAAATGAAAT</left_flank>
        <right_flank>TTTGAAAATTTTAAAAATTCCGGCGAAAAGTAACCAAGTTACGGTAGTTT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGATTCTGAGATCCTGGGGTTCTTGAAATTTTTCGAATCTCTGAAAATGACTCAATTTCTCAATCTGAAAGTACTTGAAACGTCCTCAAACCCGTTTCAAAAATGACCCAAATTCTCTTATTTCGAACCACAATAGCACTCGAGGAATGGGATGCTCTTTTTGAATGGCTCTCTGATTTTTTGGTTCATTTTTGTTGTAATTGGAGATTTTGGAAAATCCTGAAATGACAAATCTTGTTTTACTGATCAGTGAATAGACAAAATCATTCTCTTATTTTGGGTTGTCTGAAACTTGGATAAAAATGATCAGATTTAGTTGAAACTTAATTTTTCGAATTCAATGGGTCACGAGCTTCAAAATGAGTATAAACACGGCTAGCCGGCTCCGCTCACTTCGACTTTTGAAGTTAAAGGCTCATAGAGGTCTGAAAAATGAATTTCAGGGAAAGTAGGTCATGATTATATTCATTTTGAAGCGTTTGACGTGATAAATGAAATGTTTGAAAATTTTAAAAATTCCGGCGAAAAGTAACCAAGTTACGGTAGTTTTTGTTGTCTAGATAACTGGAAAGATCAAGCTAAAAAATGAAATTTATAAAAATCTTTTAAGAGAAGTTTATCATAATATCAAAGACATTTTATCAGTTGACACATTTTTTTTTCATTAAAAATCAATACCCAAGTTTTTGAAATTGTCACCTAAAAAATTGATAAATCAAACATTATTTCAAAATACCAAAACATATAATTTGGAATTTATGAACACCTAAATTATTACTTTTGAAAAATATTTATTTTTCAAACCTCGCTTAAATTTTAAACCAGTTATAGCAATGAGTACTTTAAGACCAAATTATCTAATCAAAAATTAAAAATAGAAAATTAGTATTTAACAGAAACCATTGTATGATCTGTATGAGTTGCCTTTTCCAATTTTCGATTCTCGAATACTGTAACTGGGCCAAGTGCAGTTCCAGATCGTTTTGTGCCGATTTTGTG</canonical>
            <polymorphic>GAGATTCTGAGATCCTGGGGTTCTTGAAATTTTTCGAATCTCTGAAAATGACTCAATTTCTCAATCTGAAAGTACTTGAAACGTCCTCAAACCCGTTTCAAAAATGACCCAAATTCTCTTATTTCGAACCACAATAGCACTCGAGGAATGGGATGCTCTTTTTGAATGGCTCTCTGATTTTTTGGTTCATTTTTGTTGTAATTGGAGATTTTGGAAAATCCTGAAATGACAAATCTTGTTTTACTGATCAGTGAATAGACAAAATCATTCTCTTATTTTGGGTTGTCTGAAACTTGGATAAAAATGATCAGATTTAGTTGAAACTTAATTTTTCGAATTCAATGGGTCACGAGCTTCAAAATGAGTATAAACACGGCTAGCCGGCTCCGCTCACTTCGACTTTTGAAGTTAAAGGCTCATAGAGGTCTGAAAAATGAATTTCAGGGAAAGTAGGTCATGATTATATTCATTTTGAAGCGTTTGACGTGATAAATGAAATKTTTGAAAATTTTAAAAATTCCGGCGAAAAGTAACCAAGTTACGGTAGTTTTTGTTGTCTAGATAACTGGAAAGATCAAGCTAAAAAATGAAATTTATAAAAATCTTTTAAGAGAAGTTTATCATAATATCAAAGACATTTTATCAGTTGACACATTTTTTTTTCATTAAAAATCAATACCCAAGTTTTTGAAATTGTCACCTAAAAAATTGATAAATCAAACATTATTTCAAAATACCAAAACATATAATTTGGAATTTATGAACACCTAAATTATTACTTTTGAAAAATATTTATTTTTCAAACCTCGCTTAAATTTTAAACCAGTTATAGCAATGAGTACTTTAAGACCAAATTATCTAATCAAAAATTAAAAATAGAAAATTAGTATTTAACAGAAACCATTGTATGATCTGTATGAGTTGCCTTTTCCAATTTTCGATTCTCGAATACTGTAACTGGGCCAAGTGCAGTTCCAGATCGTTTTGTGCCGATTTTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTTGGATAAAAATGATCAGA</pcr_primer_p1>
		<pcr_primer_p2>AGCTTGATCTTTCCAGTTATCTA</pcr_primer_p2>
		<pcr_amplicon_size>292</pcr_amplicon_size>
		<canonical_amplicon>AAACTTGGATAAAAATGATCAGATTTAGTTGAAACTTAATTTTTCGAATTCAATGGGTCACGAGCTTCAAAATGAGTATAAACACGGCTAGCCGGCTCCGCTCACTTCGACTTTTGAAGTTAAAGGCTCATAGAGGTCTGAAAAATGAATTTCAGGGAAAGTAGGTCATGATTATATTCATTTTGAAGCGTTTGACGTGATAAATGAAATGTTTGAAAATTTTAAAAATTCCGGCGAAAAGTAACCAAGTTACGGTAGTTTTTGTTGTCTAGATAACTGGAAAGATCAAGCT</canonical_amplicon>
		<polymorphic_amplicon>AAACTTGGATAAAAATGATCAGATTTAGTTGAAACTTAATTTTTCGAATTCAATGGGTCACGAGCTTCAAAATGAGTATAAACACGGCTAGCCGGCTCCGCTCACTTCGACTTTTGAAGTTAAAGGCTCATAGAGGTCTGAAAAATGAATTTCAGGGAAAGTAGGTCATGATTATATTCATTTTGAAGCGTTTGACGTGATAAATGAAATKTTTGAAAATTTTAAAAATTCCGGCGAAAAGTAACCAAGTTACGGTAGTTTTTGTTGTCTAGATAACTGGAAAGATCAAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37285</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>25852</contig_pos>
        <strand></strand>
        <context>tgaaatkttt[G/A]aaaattttaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTCATGATTATATTCATTTTGAAGCGTTTGACGTGATAAATGAAATGTTT</left_flank>
        <right_flank>AAAATTTTAAAAATTCCGGCGAAAAGTAACCAAGTTACGGTAGTTTTTGT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGAGATCCTGGGGTTCTTGAAATTTTTCGAATCTCTGAAAATGACTCAATTTCTCAATCTGAAAGTACTTGAAACGTCCTCAAACCCGTTTCAAAAATGACCCAAATTCTCTTATTTCGAACCACAATAGCACTCGAGGAATGGGATGCTCTTTTTGAATGGCTCTCTGATTTTTTGGTTCATTTTTGTTGTAATTGGAGATTTTGGAAAATCCTGAAATGACAAATCTTGTTTTACTGATCAGTGAATAGACAAAATCATTCTCTTATTTTGGGTTGTCTGAAACTTGGATAAAAATGATCAGATTTAGTTGAAACTTAATTTTTCGAATTCAATGGGTCACGAGCTTCAAAATGAGTATAAACACGGCTAGCCGGCTCCGCTCACTTCGACTTTTGAAGTTAAAGGCTCATAGAGGTCTGAAAAATGAATTTCAGGGAAAGTAGGTCATGATTATATTCATTTTGAAGCGTTTGACGTGATAAATGAAATGTTTGAAAATTTTAAAAATTCCGGCGAAAAGTAACCAAGTTACGGTAGTTTTTGTTGTCTAGATAACTGGAAAGATCAAGCTAAAAAATGAAATTTATAAAAATCTTTTAAGAGAAGTTTATCATAATATCAAAGACATTTTATCAGTTGACACATTTTTTTTTCATTAAAAATCAATACCCAAGTTTTTGAAATTGTCACCTAAAAAATTGATAAATCAAACATTATTTCAAAATACCAAAACATATAATTTGGAATTTATGAACACCTAAATTATTACTTTTGAAAAATATTTATTTTTCAAACCTCGCTTAAATTTTAAACCAGTTATAGCAATGAGTACTTTAAGACCAAATTATCTAATCAAAAATTAAAAATAGAAAATTAGTATTTAACAGAAACCATTGTATGATCTGTATGAGTTGCCTTTTCCAATTTTCGATTCTCGAATACTGTAACTGGGCCAAGTGCAGTTCCAGATCGTTTTGTGCCGATTTTGTGGCGA</canonical>
            <polymorphic>TTCTGAGATCCTGGGGTTCTTGAAATTTTTCGAATCTCTGAAAATGACTCAATTTCTCAATCTGAAAGTACTTGAAACGTCCTCAAACCCGTTTCAAAAATGACCCAAATTCTCTTATTTCGAACCACAATAGCACTCGAGGAATGGGATGCTCTTTTTGAATGGCTCTCTGATTTTTTGGTTCATTTTTGTTGTAATTGGAGATTTTGGAAAATCCTGAAATGACAAATCTTGTTTTACTGATCAGTGAATAGACAAAATCATTCTCTTATTTTGGGTTGTCTGAAACTTGGATAAAAATGATCAGATTTAGTTGAAACTTAATTTTTCGAATTCAATGGGTCACGAGCTTCAAAATGAGTATAAACACGGCTAGCCGGCTCCGCTCACTTCGACTTTTGAAGTTAAAGGCTCATAGAGGTCTGAAAAATGAATTTCAGGGAAAGTAGGTCATGATTATATTCATTTTGAAGCGTTTGACGTGATAAATGAAATGTTTRAAAATTTTAAAAATTCCGGCGAAAAGTAACCAAGTTACGGTAGTTTTTGTTGTCTAGATAACTGGAAAGATCAAGCTAAAAAATGAAATTTATAAAAATCTTTTAAGAGAAGTTTATCATAATATCAAAGACATTTTATCAGTTGACACATTTTTTTTTCATTAAAAATCAATACCCAAGTTTTTGAAATTGTCACCTAAAAAATTGATAAATCAAACATTATTTCAAAATACCAAAACATATAATTTGGAATTTATGAACACCTAAATTATTACTTTTGAAAAATATTTATTTTTCAAACCTCGCTTAAATTTTAAACCAGTTATAGCAATGAGTACTTTAAGACCAAATTATCTAATCAAAAATTAAAAATAGAAAATTAGTATTTAACAGAAACCATTGTATGATCTGTATGAGTTGCCTTTTCCAATTTTCGATTCTCGAATACTGTAACTGGGCCAAGTGCAGTTCCAGATCGTTTTGTGCCGATTTTGTGGCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTTGGATAAAAATGATCAGA</pcr_primer_p1>
		<pcr_primer_p2>AGCTTGATCTTTCCAGTTATCTA</pcr_primer_p2>
		<pcr_amplicon_size>292</pcr_amplicon_size>
		<canonical_amplicon>AAACTTGGATAAAAATGATCAGATTTAGTTGAAACTTAATTTTTCGAATTCAATGGGTCACGAGCTTCAAAATGAGTATAAACACGGCTAGCCGGCTCCGCTCACTTCGACTTTTGAAGTTAAAGGCTCATAGAGGTCTGAAAAATGAATTTCAGGGAAAGTAGGTCATGATTATATTCATTTTGAAGCGTTTGACGTGATAAATGAAATGTTTGAAAATTTTAAAAATTCCGGCGAAAAGTAACCAAGTTACGGTAGTTTTTGTTGTCTAGATAACTGGAAAGATCAAGCT</canonical_amplicon>
		<polymorphic_amplicon>AAACTTGGATAAAAATGATCAGATTTAGTTGAAACTTAATTTTTCGAATTCAATGGGTCACGAGCTTCAAAATGAGTATAAACACGGCTAGCCGGCTCCGCTCACTTCGACTTTTGAAGTTAAAGGCTCATAGAGGTCTGAAAAATGAATTTCAGGGAAAGTAGGTCATGATTATATTCATTTTGAAGCGTTTGACGTGATAAATGAAATGTTTRAAAATTTTAAAAATTCCGGCGAAAAGTAACCAAGTTACGGTAGTTTTTGTTGTCTAGATAACTGGAAAGATCAAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37286</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>41278</contig_pos>
        <strand>+</strand>
        <context>GAACAACGAA[A/G]GATCCACTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTTTTTTTTCCAGAGATTCCCCCAACTCATCGCCGCTACGAACAACGAA</left_flank>
        <right_flank>GATCCACTTGCTTACACTGGGCCGCCCGTTGTGGATCGTCTGAATGCGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACTCTCCCAAATCACATCGATTTGTTTCGAAATTTCGGTCAATGGAAATCTTTCGTTGCGGTCTTTCAGCACTTCGAACACTTTTTCCAGTTTTTTGACCGCTTGCTCCGCCGTCTCTCCTACAGCGTTGATCATTGGATTCGCGATTTGGGTTCGTCGTCGAAGGCACAACATTTTCTGGAAAACATTCATTTCTAGATACTGTAATCATTCTAATAAAAGGCATACTAGAATTTTGAGCTCAATCATTGGGGCTTCTTCGAAAGATATTGAACTTTTATCAAGTGATAAATTGATTATCATAATGCCACCAATACTTTATCAGTGGACAATTTGTCCATATCTTTGACAGCTACAGAGACAAAATGCCTCAAAATTAAAATTAAAGGGCTCTTCTACTACAGGTTTTCAAGTACTTTTCTGAAATTTCTAGCCACAACCTTATTCACTTTTTTTTCCAGAGATTCCCCCAACTCATCGCCGCTACGAACAACGAAGGATCCACTTGCTTACACTGGGCCGCCCGTTGTGGATCGTCTGAATGCGTTTCTACGTAATACAACAATAATAAGCTCAAAAAAAGGCCGAATTTTCAGAATTCTCAACTTCCCATTCCCATCAGAATATTTGATGGAAATCGATACCGTTGGTGCTCCAGCCTACAAGCTTGCCCTAGATGTGAACGAGGTGGATGGAGAGTGTCGAACTGCAATGTATCTGGCAGTGGCCGAGGGACATTTAGAAGTCGTTCAGGCTATGACGGAGGTACACATCCTTATAAGGGTACACTAGGACGCCAAAATCAAATTAATTCTTTTCAGTTCAAATGCACGTCCATAGACGGCAAACGCCGTTGCCCCTTCCAACTCGACGTCTACTGTACACGTGGCAGAACTCCATTCATGTTGGCTGCCTTCAACCACAATCTTCCACTAATGACTCTTCTCCTAGACGCTGGAGCTGATATCAACCTCCCATTAGCCGTCCTAGATACAGAG</canonical>
            <polymorphic>ACACTCTCCCAAATCACATCGATTTGTTTCGAAATTTCGGTCAATGGAAATCTTTCGTTGCGGTCTTTCAGCACTTCGAACACTTTTTCCAGTTTTTTGACCGCTTGCTCCGCCGTCTCTCCTACAGCGTTGATCATTGGATTCGCGATTTGGGTTCGTCGTCGAAGGCACAACATTTTCTGGAAAACATTCATTTCTAGATACTGTAATCATTCTAATAAAAGGCATACTAGAATTTTGAGCTCAATCATTGGGGCTTCTTCGAAAGATATTGAACTTTTATCAAGTGATAAATTGATTATCATAATGCCACCAATACTTTATCAGTGGACAATTTGTCCATATCTTTGACAGCTACAGAGACAAAATGCCTCAAAATTAAAATTAAAGGGCTCTTCTACTACAGGTTTTCAAGTACTTTTCTGAAATTTCTAGCCACAACCTTATTCACTTTTTTTTCCAGAGATTCCCCCAACTCATCGCCGCTACGAACAACGAARGATCCACTTGCTTACACTGGGCCGCCCGTTGTGGATCGTCTGAATGCGTTTCTACGTAATACAACAATAATAAGCTCAAAAAAAGGCCGAATTTTCAGAATTCTCAACTTCCCATTCCCATCAGAATATTTGATGGAAATCGATACCGTTGGTGCTCCAGCCTACAAGCTTGCCCTAGATGTGAACGAGGTGGATGGAGAGTGTCGAACTGCAATGTATCTGGCAGTGGCCGAGGGACATTTAGAAGTCGTTCAGGCTATGACGGAGGTACACATCCTTATAAGGGTACACTAGGACGCCAAAATCAAATTAATTCTTTTCAGTTCAAATGCACGTCCATAGACGGCAAACGCCGTTGCCCCTTCCAACTCGACGTCTACTGTACACGTGGCAGAACTCCATTCATGTTGGCTGCCTTCAACCACAATCTTCCACTAATGACTCTTCTCCTAGACGCTGGAGCTGATATCAACCTCCCATTAGCCGTCCTAGATACAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGATCC</site>
                <isoschizomers>
                    <enzyme>BamHI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCCACAACCTTATTCACTTT</pcr_primer_p1>
		<pcr_primer_p2>ACATCTAGGGCAAGCTTGTAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGCCACAACCTTATTCACTTTTTTTTCCAGAGATTCCCCCAACTCATCGCCGCTACGAACAACGAAGGATCCACTTGCTTACACTGGGCCGCCCGTTGTGGATCGTCTGAATGCGTTTCTACGTAATACAACAATAATAAGCTCAAAAAAAGGCCGAATTTTCAGAATTCTCAACTTCCCATTCCCATCAGAATATTTGATGGAAATCGATACCGTTGGTGCTCCAGCCTACAAGCTTGCCCTAGATGT</canonical_amplicon>
		<polymorphic_amplicon>AGCCACAACCTTATTCACTTTTTTTTCCAGAGATTCCCCCAACTCATCGCCGCTACGAACAACGAARGATCCACTTGCTTACACTGGGCCGCCCGTTGTGGATCGTCTGAATGCGTTTCTACGTAATACAACAATAATAAGCTCAAAAAAAGGCCGAATTTTCAGAATTCTCAACTTCCCATTCCCATCAGAATATTTGATGGAAATCGATACCGTTGGTGCTCCAGCCTACAAGCTTGCCCTAGATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37287</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>48646</contig_pos>
        <strand>+</strand>
        <context>AATAAAACAT[A/G]TAMAATCAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTGTGAAGAATTCGACCGAAAAAATTACTAACATTGAATAAAACAT</left_flank>
        <right_flank>TAAAATCAGAATTTTCGCTATTTTCTAGCTAAAAATGATTCAAATCAATA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAAAGAAAATTAAAAAAAATAAATCGAAAATTCGGAAAAGGGACGATTTTCACAGGAAAAAAAACATTTAAAAAAGGAAAAAACCACAAAAAAATTTTGACCGAAAATTCTACAGCAATCTTTTAAAGGAACATTATCCGAGGGTGTTTAGAGTTTCGACACGAAATTAATTTTTTGTGAAAAAAAACGAATTTGTATAAATTTTTTTGAGCAGCATTTGACCGAGAAATTCCGAAAAATTACAAAATTCAAACTTGCAATTTAAAAAACGTATTTTTCAAGCTAATTAGGCTCGTTTTTCATAGTTTTTGAAGAAAAATATCCTTAATTCCATGACAAAATTCGACTAAACATGCTACCGTAACCTTTCAAAGGAACATTATTCAAAGATGTGTGAGGTTTGACACGATATCAGTTTTATTACAAAAAAAGAACTTTCAAAAGGTTTTTTTGTGAAGAATTCGACCGAAAAAATTACTAACATTGAATAAAACATATAAAATCAGAATTTTCGCTATTTTCTAGCTAAAAATGATTCAAATCAATAAATTCTTATAAAATGCGAAAAAAACCATATTTTCAAAATAATTTTACAAAACGAGAGGAAAATGATGGAAACGTAATTTTTCAGGTATCTCATCTCGGAACCTTCGACTCTCCTTATGAAATCCACACATCCACATTCCTCGACAACGGATCAACACGGCAAATCTGGACAGGCCACTCAGAAGGACGCATTTCCATTCACCACTTGGCCTCCAATGACACCTTCAGCTTCTCGTCAAGTCTCTATCTCCCCGACGACAAGTCGGTAGTTAGACAGCTAGTAGGCTCAAAAGATGCTCAAAAAGTGTGGATTTCCTTAGAAAAGAGCTCAAAAATCCAAATGGTGGAGGTAGAAAAACGACAAGTCACCGGCTCGCTAGATATACGAAAAGTGATGCCTGGAAGTGAAACAATTCATACAATCGACATGGAAATGGCTAGTCAGAACCAT</canonical>
            <polymorphic>GAAAAAAGAAAATTAAAAAAAATAAATCGAAAATTCGGAAAAGGGACGATTTTCACAGGAAAAAAAACATTTAAAAAAGGAAAAAACCACAAAAAAATTTTGACCGAAAATTCTACAGCAATCTTTTAAAGGAACATTATCCGAGGGTGTTTAGAGTTTCGACACGAAATTAATTTTTTGTGAAAAAAAACGAATTTGTATAAATTTTTTTGAGCAGCATTTGACCGAGAAATTCCGAAAAATTACAAAATTCAAACTTGCAATTTAAAAAACGTATTTTTCAAGCTAATTAGGCTCGTTTTTCATAGTTTTTGAAGAAAAATATCCTTAATTCCATGACAAAATTCGACTAAACATGCTACCGTAACCTTTCAAAGGAACATTATTCAAAGATGTGTGAGGTTTGACACGATATCAGTTTTATTACAAAAAAAGAACTTTCAAAAGGTTTTTTTGTGAAGAATTCGACCGAAAAAATTACTAACATTGAATAAAACATRTAAAATCAGAATTTTCGCTATTTTCTAGCTAAAAATGATTCAAATCAATAAATTCTTATAAAATGCGAAAAAAACCATATTTTCAAAATAATTTTACAAAACGAGAGGAAAATGATGGAAACGTAATTTTTCAGGTATCTCATCTCGGAACCTTCGACTCTCCTTATGAAATCCACACATCCACATTCCTCGACAACGGATCAACACGGCAAATCTGGACAGGCCACTCAGAAGGACGCATTTCCATTCACCACTTGGCCTCCAATGACACCTTCAGCTTCTCGTCAAGTCTCTATCTCCCCGACGACAAGTCGGTAGTTAGACAGCTAGTAGGCTCAAAAGATGCTCAAAAAGTGTGGATTTCCTTAGAAAAGAGCTCAAAAATCCAAATGGTGGAGGTAGAAAAACGACAAGTCACCGGCTCGCTAGATATACGAAAAGTGATGCCTGGAAGTGAAACAATTCATACAATCGACATGGAAATGGCTAGTCAGAACCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATATCCTTAATTCCATGACAA</pcr_primer_p1>
		<pcr_primer_p2>TCGCATTTTATAAGAATTTATTGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATATCCTTAATTCCATGACAAAATTCGACTAAACATGCTACCGTAACCTTTCAAAGGAACATTATTCAAAGATGTGTGAGGTTTGACACGATATCAGTTTTATTACAAAAAAAGAACTTTCAAAAGGTTTTTTTGTGAAGAATTCGACCGAAAAAATTACTAACATTGAATAAAACATATAAAATCAGAATTTTCGCTATTTTCTAGCTAAAAATGATTCAAATCAATAAATTCTTATAAAATGCGA</canonical_amplicon>
		<polymorphic_amplicon>AAATATCCTTAATTCCATGACAAAATTCGACTAAACATGCTACCGTAACCTTTCAAAGGAACATTATTCAAAGATGTGTGAGGTTTGACACGATATCAGTTTTATTACAAAAAAAGAACTTTCAAAAGGTTTTTTTGTGAAGAATTCGACCGAAAAAATTACTAACATTGAATAAAACATRTAAAATCAGAATTTTCGCTATTTTCTAGCTAAAAATGATTCAAATCAATAAATTCTTATAAAATGCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37288</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>48649</contig_pos>
        <strand>+</strand>
        <context>AAAACATRTA[A/C]AATCAGAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTGTGAAGAATTCGACCGAAAAAATTACTAACATTGAATAAAACATATA</left_flank>
        <right_flank>AATCAGAATTTTCGCTATTTTCTAGCTAAAAATGATTCAAATCAATAAAT</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGAAAATTAAAAAAAATAAATCGAAAATTCGGAAAAGGGACGATTTTCACAGGAAAAAAAACATTTAAAAAAGGAAAAAACCACAAAAAAATTTTGACCGAAAATTCTACAGCAATCTTTTAAAGGAACATTATCCGAGGGTGTTTAGAGTTTCGACACGAAATTAATTTTTTGTGAAAAAAAACGAATTTGTATAAATTTTTTTGAGCAGCATTTGACCGAGAAATTCCGAAAAATTACAAAATTCAAACTTGCAATTTAAAAAACGTATTTTTCAAGCTAATTAGGCTCGTTTTTCATAGTTTTTGAAGAAAAATATCCTTAATTCCATGACAAAATTCGACTAAACATGCTACCGTAACCTTTCAAAGGAACATTATTCAAAGATGTGTGAGGTTTGACACGATATCAGTTTTATTACAAAAAAAGAACTTTCAAAAGGTTTTTTTGTGAAGAATTCGACCGAAAAAATTACTAACATTGAATAAAACATATAAAATCAGAATTTTCGCTATTTTCTAGCTAAAAATGATTCAAATCAATAAATTCTTATAAAATGCGAAAAAAACCATATTTTCAAAATAATTTTACAAAACGAGAGGAAAATGATGGAAACGTAATTTTTCAGGTATCTCATCTCGGAACCTTCGACTCTCCTTATGAAATCCACACATCCACATTCCTCGACAACGGATCAACACGGCAAATCTGGACAGGCCACTCAGAAGGACGCATTTCCATTCACCACTTGGCCTCCAATGACACCTTCAGCTTCTCGTCAAGTCTCTATCTCCCCGACGACAAGTCGGTAGTTAGACAGCTAGTAGGCTCAAAAGATGCTCAAAAAGTGTGGATTTCCTTAGAAAAGAGCTCAAAAATCCAAATGGTGGAGGTAGAAAAACGACAAGTCACCGGCTCGCTAGATATACGAAAAGTGATGCCTGGAAGTGAAACAATTCATACAATCGACATGGAAATGGCTAGTCAGAACCATGTA</canonical>
            <polymorphic>AAAAGAAAATTAAAAAAAATAAATCGAAAATTCGGAAAAGGGACGATTTTCACAGGAAAAAAAACATTTAAAAAAGGAAAAAACCACAAAAAAATTTTGACCGAAAATTCTACAGCAATCTTTTAAAGGAACATTATCCGAGGGTGTTTAGAGTTTCGACACGAAATTAATTTTTTGTGAAAAAAAACGAATTTGTATAAATTTTTTTGAGCAGCATTTGACCGAGAAATTCCGAAAAATTACAAAATTCAAACTTGCAATTTAAAAAACGTATTTTTCAAGCTAATTAGGCTCGTTTTTCATAGTTTTTGAAGAAAAATATCCTTAATTCCATGACAAAATTCGACTAAACATGCTACCGTAACCTTTCAAAGGAACATTATTCAAAGATGTGTGAGGTTTGACACGATATCAGTTTTATTACAAAAAAAGAACTTTCAAAAGGTTTTTTTGTGAAGAATTCGACCGAAAAAATTACTAACATTGAATAAAACATATAMAATCAGAATTTTCGCTATTTTCTAGCTAAAAATGATTCAAATCAATAAATTCTTATAAAATGCGAAAAAAACCATATTTTCAAAATAATTTTACAAAACGAGAGGAAAATGATGGAAACGTAATTTTTCAGGTATCTCATCTCGGAACCTTCGACTCTCCTTATGAAATCCACACATCCACATTCCTCGACAACGGATCAACACGGCAAATCTGGACAGGCCACTCAGAAGGACGCATTTCCATTCACCACTTGGCCTCCAATGACACCTTCAGCTTCTCGTCAAGTCTCTATCTCCCCGACGACAAGTCGGTAGTTAGACAGCTAGTAGGCTCAAAAGATGCTCAAAAAGTGTGGATTTCCTTAGAAAAGAGCTCAAAAATCCAAATGGTGGAGGTAGAAAAACGACAAGTCACCGGCTCGCTAGATATACGAAAAGTGATGCCTGGAAGTGAAACAATTCATACAATCGACATGGAAATGGCTAGTCAGAACCATGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATATCCTTAATTCCATGACAA</pcr_primer_p1>
		<pcr_primer_p2>TCGCATTTTATAAGAATTTATTGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATATCCTTAATTCCATGACAAAATTCGACTAAACATGCTACCGTAACCTTTCAAAGGAACATTATTCAAAGATGTGTGAGGTTTGACACGATATCAGTTTTATTACAAAAAAAGAACTTTCAAAAGGTTTTTTTGTGAAGAATTCGACCGAAAAAATTACTAACATTGAATAAAACATATAAAATCAGAATTTTCGCTATTTTCTAGCTAAAAATGATTCAAATCAATAAATTCTTATAAAATGCGA</canonical_amplicon>
		<polymorphic_amplicon>AAATATCCTTAATTCCATGACAAAATTCGACTAAACATGCTACCGTAACCTTTCAAAGGAACATTATTCAAAGATGTGTGAGGTTTGACACGATATCAGTTTTATTACAAAAAAAGAACTTTCAAAAGGTTTTTTTGTGAAGAATTCGACCGAAAAAATTACTAACATTGAATAAAACATATAMAATCAGAATTTTCGCTATTTTCTAGCTAAAAATGATTCAAATCAATAAATTCTTATAAAATGCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37289</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>48749</contig_pos>
        <strand>+</strand>
        <context>TTTACAAAAC[C/G]AGAGGAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCTTATAAAATGCGAAAAAAACCATATTTTCAAAATAATTTTACAAAAC</left_flank>
        <right_flank>AGAGGAAAATGATGGAAACGTAATTTTTCAGGTATCTCATCTCGGAACCT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGAAAATTCTACAGCAATCTTTTAAAGGAACATTATCCGAGGGTGTTTAGAGTTTCGACACGAAATTAATTTTTTGTGAAAAAAAACGAATTTGTATAAATTTTTTTGAGCAGCATTTGACCGAGAAATTCCGAAAAATTACAAAATTCAAACTTGCAATTTAAAAAACGTATTTTTCAAGCTAATTAGGCTCGTTTTTCATAGTTTTTGAAGAAAAATATCCTTAATTCCATGACAAAATTCGACTAAACATGCTACCGTAACCTTTCAAAGGAACATTATTCAAAGATGTGTGAGGTTTGACACGATATCAGTTTTATTACAAAAAAAGAACTTTCAAAAGGTTTTTTTGTGAAGAATTCGACCGAAAAAATTACTAACATTGAATAAAACATATAAAATCAGAATTTTCGCTATTTTCTAGCTAAAAATGATTCAAATCAATAAATTCTTATAAAATGCGAAAAAAACCATATTTTCAAAATAATTTTACAAAACGAGAGGAAAATGATGGAAACGTAATTTTTCAGGTATCTCATCTCGGAACCTTCGACTCTCCTTATGAAATCCACACATCCACATTCCTCGACAACGGATCAACACGGCAAATCTGGACAGGCCACTCAGAAGGACGCATTTCCATTCACCACTTGGCCTCCAATGACACCTTCAGCTTCTCGTCAAGTCTCTATCTCCCCGACGACAAGTCGGTAGTTAGACAGCTAGTAGGCTCAAAAGATGCTCAAAAAGTGTGGATTTCCTTAGAAAAGAGCTCAAAAATCCAAATGGTGGAGGTAGAAAAACGACAAGTCACCGGCTCGCTAGATATACGAAAAGTGATGCCTGGAAGTGAAACAATTCATACAATCGACATGGAAATGGCTAGTCAGAACCATGTAACATATCTAGGGCTTCTAGAAAGAAACAATGGAGATCAATTGTATATTGGAACGTCGAAAGGGTTGCTGGTGATTGCTCATGCCGCGACAGTAAGATTTT</canonical>
            <polymorphic>CCGAAAATTCTACAGCAATCTTTTAAAGGAACATTATCCGAGGGTGTTTAGAGTTTCGACACGAAATTAATTTTTTGTGAAAAAAAACGAATTTGTATAAATTTTTTTGAGCAGCATTTGACCGAGAAATTCCGAAAAATTACAAAATTCAAACTTGCAATTTAAAAAACGTATTTTTCAAGCTAATTAGGCTCGTTTTTCATAGTTTTTGAAGAAAAATATCCTTAATTCCATGACAAAATTCGACTAAACATGCTACCGTAACCTTTCAAAGGAACATTATTCAAAGATGTGTGAGGTTTGACACGATATCAGTTTTATTACAAAAAAAGAACTTTCAAAAGGTTTTTTTGTGAAGAATTCGACCGAAAAAATTACTAACATTGAATAAAACATATAAAATCAGAATTTTCGCTATTTTCTAGCTAAAAATGATTCAAATCAATAAATTCTTATAAAATGCGAAAAAAACCATATTTTCAAAATAATTTTACAAAACSAGAGGAAAATGATGGAAACGTAATTTTTCAGGTATCTCATCTCGGAACCTTCGACTCTCCTTATGAAATCCACACATCCACATTCCTCGACAACGGATCAACACGGCAAATCTGGACAGGCCACTCAGAAGGACGCATTTCCATTCACCACTTGGCCTCCAATGACACCTTCAGCTTCTCGTCAAGTCTCTATCTCCCCGACGACAAGTCGGTAGTTAGACAGCTAGTAGGCTCAAAAGATGCTCAAAAAGTGTGGATTTCCTTAGAAAAGAGCTCAAAAATCCAAATGGTGGAGGTAGAAAAACGACAAGTCACCGGCTCGCTAGATATACGAAAAGTGATGCCTGGAAGTGAAACAATTCATACAATCGACATGGAAATGGCTAGTCAGAACCATGTAACATATCTAGGGCTTCTAGAAAGAAACAATGGAGATCAATTGTATATTGGAACGTCGAAAGGGTTGCTGGTGATTGCTCATGCCGCGACAGTAAGATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACACGATATCAGTTTTATTACA</pcr_primer_p1>
		<pcr_primer_p2>GAAGGTTCCGAGATGAGATAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGACACGATATCAGTTTTATTACAAAAAAAGAACTTTCAAAAGGTTTTTTTGTGAAGAATTCGACCGAAAAAATTACTAACATTGAATAAAACATATAAAATCAGAATTTTCGCTATTTTCTAGCTAAAAATGATTCAAATCAATAAATTCTTATAAAATGCGAAAAAAACCATATTTTCAAAATAATTTTACAAAACGAGAGGAAAATGATGGAAACGTAATTTTTCAGGTATCTCATCTCGGAACCTTC</canonical_amplicon>
		<polymorphic_amplicon>TGACACGATATCAGTTTTATTACAAAAAAAGAACTTTCAAAAGGTTTTTTTGTGAAGAATTCGACCGAAAAAATTACTAACATTGAATAAAACATATAAAATCAGAATTTTCGCTATTTTCTAGCTAAAAATGATTCAAATCAATAAATTCTTATAAAATGCGAAAAAAACCATATTTTCAAAATAATTTTACAAAACSAGAGGAAAATGATGGAAACGTAATTTTTCAGGTATCTCATCTCGGAACCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37290</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>48867</contig_pos>
        <strand>+</strand>
        <context>AAATCTGGAC[A/C]GGCCACTCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCCACACATCCACATTCCTCGACAACGGATCAACACGGCAAATCTGGAC</left_flank>
        <right_flank>GGCCACTCAGAAGGACGCATTTCCATTCACCACTTGGCCTCCAATGACAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACCGAGAAATTCCGAAAAATTACAAAATTCAAACTTGCAATTTAAAAAACGTATTTTTCAAGCTAATTAGGCTCGTTTTTCATAGTTTTTGAAGAAAAATATCCTTAATTCCATGACAAAATTCGACTAAACATGCTACCGTAACCTTTCAAAGGAACATTATTCAAAGATGTGTGAGGTTTGACACGATATCAGTTTTATTACAAAAAAAGAACTTTCAAAAGGTTTTTTTGTGAAGAATTCGACCGAAAAAATTACTAACATTGAATAAAACATATAAAATCAGAATTTTCGCTATTTTCTAGCTAAAAATGATTCAAATCAATAAATTCTTATAAAATGCGAAAAAAACCATATTTTCAAAATAATTTTACAAAACGAGAGGAAAATGATGGAAACGTAATTTTTCAGGTATCTCATCTCGGAACCTTCGACTCTCCTTATGAAATCCACACATCCACATTCCTCGACAACGGATCAACACGGCAAATCTGGACAGGCCACTCAGAAGGACGCATTTCCATTCACCACTTGGCCTCCAATGACACCTTCAGCTTCTCGTCAAGTCTCTATCTCCCCGACGACAAGTCGGTAGTTAGACAGCTAGTAGGCTCAAAAGATGCTCAAAAAGTGTGGATTTCCTTAGAAAAGAGCTCAAAAATCCAAATGGTGGAGGTAGAAAAACGACAAGTCACCGGCTCGCTAGATATACGAAAAGTGATGCCTGGAAGTGAAACAATTCATACAATCGACATGGAAATGGCTAGTCAGAACCATGTAACATATCTAGGGCTTCTAGAAAGAAACAATGGAGATCAATTGTATATTGGAACGTCGAAAGGGTTGCTGGTGATTGCTCATGCCGCGACAGTAAGATTTTTATTTAATAAATCTAATTGAGAATTCATTTTTCAGCTCCAACCGTTGTCTGCATGCCGTCCGTTTGAAGGAGACATTACATCAATATGTATTCTAGAAGAACCTTCTAGAGAAGAAGA</canonical>
            <polymorphic>TGACCGAGAAATTCCGAAAAATTACAAAATTCAAACTTGCAATTTAAAAAACGTATTTTTCAAGCTAATTAGGCTCGTTTTTCATAGTTTTTGAAGAAAAATATCCTTAATTCCATGACAAAATTCGACTAAACATGCTACCGTAACCTTTCAAAGGAACATTATTCAAAGATGTGTGAGGTTTGACACGATATCAGTTTTATTACAAAAAAAGAACTTTCAAAAGGTTTTTTTGTGAAGAATTCGACCGAAAAAATTACTAACATTGAATAAAACATATAAAATCAGAATTTTCGCTATTTTCTAGCTAAAAATGATTCAAATCAATAAATTCTTATAAAATGCGAAAAAAACCATATTTTCAAAATAATTTTACAAAACGAGAGGAAAATGATGGAAACGTAATTTTTCAGGTATCTCATCTCGGAACCTTCGACTCTCCTTATGAAATCCACACATCCACATTCCTCGACAACGGATCAACACGGCAAATCTGGACMGGCCACTCAGAAGGACGCATTTCCATTCACCACTTGGCCTCCAATGACACCTTCAGCTTCTCGTCAAGTCTCTATCTCCCCGACGACAAGTCGGTAGTTAGACAGCTAGTAGGCTCAAAAGATGCTCAAAAAGTGTGGATTTCCTTAGAAAAGAGCTCAAAAATCCAAATGGTGGAGGTAGAAAAACGACAAGTCACCGGCTCGCTAGATATACGAAAAGTGATGCCTGGAAGTGAAACAATTCATACAATCGACATGGAAATGGCTAGTCAGAACCATGTAACATATCTAGGGCTTCTAGAAAGAAACAATGGAGATCAATTGTATATTGGAACGTCGAAAGGGTTGCTGGTGATTGCTCATGCCGCGACAGTAAGATTTTTATTTAATAAATCTAATTGAGAATTCATTTTTCAGCTCCAACCGTTGTCTGCATGCCGTCCGTTTGAAGGAGACATTACATCAATATGTATTCTAGAAGAACCTTCTAGAGAAGAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 463 35</canonical_bands>
                <polymorphic_bands>537 463</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGATGGAAACGTAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CACACTTTTTGAGCATCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATGATGGAAACGTAATTTTTCAGGTATCTCATCTCGGAACCTTCGACTCTCCTTATGAAATCCACACATCCACATTCCTCGACAACGGATCAACACGGCAAATCTGGACAGGCCACTCAGAAGGACGCATTTCCATTCACCACTTGGCCTCCAATGACACCTTCAGCTTCTCGTCAAGTCTCTATCTCCCCGACGACAAGTCGGTAGTTAGACAGCTAGTAGGCTCAAAAGATGCTCAAAAAGTGTG</canonical_amplicon>
		<polymorphic_amplicon>AAATGATGGAAACGTAATTTTTCAGGTATCTCATCTCGGAACCTTCGACTCTCCTTATGAAATCCACACATCCACATTCCTCGACAACGGATCAACACGGCAAATCTGGACMGGCCACTCAGAAGGACGCATTTCCATTCACCACTTGGCCTCCAATGACACCTTCAGCTTCTCGTCAAGTCTCTATCTCCCCGACGACAAGTCGGTAGTTAGACAGCTAGTAGGCTCAAAAGATGCTCAAAAAGTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37291</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>49012</contig_pos>
        <strand>+</strand>
        <context>GTGGATTTCC[C/T]TAGAAAAGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGTTAGACAGCTAGTAGGCTCAAAAGATGCTCAAAAAGTGTGGATTTCC</left_flank>
        <right_flank>TAGAAAAGAGCTCAAAAATCCAAATGGTGGAGGTAGAAAAACGACAAGTC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTTTCAAAGGAACATTATTCAAAGATGTGTGAGGTTTGACACGATATCAGTTTTATTACAAAAAAAGAACTTTCAAAAGGTTTTTTTGTGAAGAATTCGACCGAAAAAATTACTAACATTGAATAAAACATATAAAATCAGAATTTTCGCTATTTTCTAGCTAAAAATGATTCAAATCAATAAATTCTTATAAAATGCGAAAAAAACCATATTTTCAAAATAATTTTACAAAACGAGAGGAAAATGATGGAAACGTAATTTTTCAGGTATCTCATCTCGGAACCTTCGACTCTCCTTATGAAATCCACACATCCACATTCCTCGACAACGGATCAACACGGCAAATCTGGACAGGCCACTCAGAAGGACGCATTTCCATTCACCACTTGGCCTCCAATGACACCTTCAGCTTCTCGTCAAGTCTCTATCTCCCCGACGACAAGTCGGTAGTTAGACAGCTAGTAGGCTCAAAAGATGCTCAAAAAGTGTGGATTTCCTTAGAAAAGAGCTCAAAAATCCAAATGGTGGAGGTAGAAAAACGACAAGTCACCGGCTCGCTAGATATACGAAAAGTGATGCCTGGAAGTGAAACAATTCATACAATCGACATGGAAATGGCTAGTCAGAACCATGTAACATATCTAGGGCTTCTAGAAAGAAACAATGGAGATCAATTGTATATTGGAACGTCGAAAGGGTTGCTGGTGATTGCTCATGCCGCGACAGTAAGATTTTTATTTAATAAATCTAATTGAGAATTCATTTTTCAGCTCCAACCGTTGTCTGCATGCCGTCCGTTTGAAGGAGACATTACATCAATATGTATTCTAGAAGAACCTTCTAGAGAAGAAGAAAGTATACGTGGCAAAGCGACGACGTTGAGTACGGCGTCGTCGGAAAGCGGGTTGGGATGGGTGCGCGAGAGAGTTAGTGAAACTGTTGATCGGTGAGTATTTCAGAAAACTGTATTTAATCGCGCCGTAGGTGCGGCAAACAGA</canonical>
            <polymorphic>ACCTTTCAAAGGAACATTATTCAAAGATGTGTGAGGTTTGACACGATATCAGTTTTATTACAAAAAAAGAACTTTCAAAAGGTTTTTTTGTGAAGAATTCGACCGAAAAAATTACTAACATTGAATAAAACATATAAAATCAGAATTTTCGCTATTTTCTAGCTAAAAATGATTCAAATCAATAAATTCTTATAAAATGCGAAAAAAACCATATTTTCAAAATAATTTTACAAAACGAGAGGAAAATGATGGAAACGTAATTTTTCAGGTATCTCATCTCGGAACCTTCGACTCTCCTTATGAAATCCACACATCCACATTCCTCGACAACGGATCAACACGGCAAATCTGGACAGGCCACTCAGAAGGACGCATTTCCATTCACCACTTGGCCTCCAATGACACCTTCAGCTTCTCGTCAAGTCTCTATCTCCCCGACGACAAGTCGGTAGTTAGACAGCTAGTAGGCTCAAAAGATGCTCAAAAAGTGTGGATTTCCYTAGAAAAGAGCTCAAAAATCCAAATGGTGGAGGTAGAAAAACGACAAGTCACCGGCTCGCTAGATATACGAAAAGTGATGCCTGGAAGTGAAACAATTCATACAATCGACATGGAAATGGCTAGTCAGAACCATGTAACATATCTAGGGCTTCTAGAAAGAAACAATGGAGATCAATTGTATATTGGAACGTCGAAAGGGTTGCTGGTGATTGCTCATGCCGCGACAGTAAGATTTTTATTTAATAAATCTAATTGAGAATTCATTTTTCAGCTCCAACCGTTGTCTGCATGCCGTCCGTTTGAAGGAGACATTACATCAATATGTATTCTAGAAGAACCTTCTAGAGAAGAAGAAAGTATACGTGGCAAAGCGACGACGTTGAGTACGGCGTCGTCGGAAAGCGGGTTGGGATGGGTGCGCGAGAGAGTTAGTGAAACTGTTGATCGGTGAGTATTTCAGAAAACTGTATTTAATCGCGCCGTAGGTGCGGCAAACAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 361 138</canonical_bands>
                <polymorphic_bands>639 361</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAGTCGGTAGTTAGACAGCTA</pcr_primer_p1>
		<pcr_primer_p2>GTTCCAATATACAATTGATCTCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACAAGTCGGTAGTTAGACAGCTAGTAGGCTCAAAAGATGCTCAAAAAGTGTGGATTTCCTTAGAAAAGAGCTCAAAAATCCAAATGGTGGAGGTAGAAAAACGACAAGTCACCGGCTCGCTAGATATACGAAAAGTGATGCCTGGAAGTGAAACAATTCATACAATCGACATGGAAATGGCTAGTCAGAACCATGTAACATATCTAGGGCTTCTAGAAAGAAACAATGGAGATCAATTGTATATTGGAAC</canonical_amplicon>
		<polymorphic_amplicon>ACAAGTCGGTAGTTAGACAGCTAGTAGGCTCAAAAGATGCTCAAAAAGTGTGGATTTCCYTAGAAAAGAGCTCAAAAATCCAAATGGTGGAGGTAGAAAAACGACAAGTCACCGGCTCGCTAGATATACGAAAAGTGATGCCTGGAAGTGAAACAATTCATACAATCGACATGGAAATGGCTAGTCAGAACCATGTAACATATCTAGGGCTTCTAGAAAGAAACAATGGAGATCAATTGTATATTGGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37292</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>49041</contig_pos>
        <strand>+</strand>
        <context>TCCAAATGGT[A/G]GAGGTAGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTCAAAAAGTGTGGATTTCCTTAGAAAAGAGCTCAAAAATCCAAATGGT</left_flank>
        <right_flank>GAGGTAGAAAAACGACAAGTCACCGGCTCGCTAGATATACGAAAAGTGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGAGGTTTGACACGATATCAGTTTTATTACAAAAAAAGAACTTTCAAAAGGTTTTTTTGTGAAGAATTCGACCGAAAAAATTACTAACATTGAATAAAACATATAAAATCAGAATTTTCGCTATTTTCTAGCTAAAAATGATTCAAATCAATAAATTCTTATAAAATGCGAAAAAAACCATATTTTCAAAATAATTTTACAAAACGAGAGGAAAATGATGGAAACGTAATTTTTCAGGTATCTCATCTCGGAACCTTCGACTCTCCTTATGAAATCCACACATCCACATTCCTCGACAACGGATCAACACGGCAAATCTGGACAGGCCACTCAGAAGGACGCATTTCCATTCACCACTTGGCCTCCAATGACACCTTCAGCTTCTCGTCAAGTCTCTATCTCCCCGACGACAAGTCGGTAGTTAGACAGCTAGTAGGCTCAAAAGATGCTCAAAAAGTGTGGATTTCCTTAGAAAAGAGCTCAAAAATCCAAATGGTGGAGGTAGAAAAACGACAAGTCACCGGCTCGCTAGATATACGAAAAGTGATGCCTGGAAGTGAAACAATTCATACAATCGACATGGAAATGGCTAGTCAGAACCATGTAACATATCTAGGGCTTCTAGAAAGAAACAATGGAGATCAATTGTATATTGGAACGTCGAAAGGGTTGCTGGTGATTGCTCATGCCGCGACAGTAAGATTTTTATTTAATAAATCTAATTGAGAATTCATTTTTCAGCTCCAACCGTTGTCTGCATGCCGTCCGTTTGAAGGAGACATTACATCAATATGTATTCTAGAAGAACCTTCTAGAGAAGAAGAAAGTATACGTGGCAAAGCGACGACGTTGAGTACGGCGTCGTCGGAAAGCGGGTTGGGATGGGTGCGCGAGAGAGTTAGTGAAACTGTTGATCGGTGAGTATTTCAGAAAACTGTATTTAATCGCGCCGTAGGTGCGGCAAACAGATGACTGTTTTTTTTTCAAAATAAAAATTT</canonical>
            <polymorphic>TGTGAGGTTTGACACGATATCAGTTTTATTACAAAAAAAGAACTTTCAAAAGGTTTTTTTGTGAAGAATTCGACCGAAAAAATTACTAACATTGAATAAAACATATAAAATCAGAATTTTCGCTATTTTCTAGCTAAAAATGATTCAAATCAATAAATTCTTATAAAATGCGAAAAAAACCATATTTTCAAAATAATTTTACAAAACGAGAGGAAAATGATGGAAACGTAATTTTTCAGGTATCTCATCTCGGAACCTTCGACTCTCCTTATGAAATCCACACATCCACATTCCTCGACAACGGATCAACACGGCAAATCTGGACAGGCCACTCAGAAGGACGCATTTCCATTCACCACTTGGCCTCCAATGACACCTTCAGCTTCTCGTCAAGTCTCTATCTCCCCGACGACAAGTCGGTAGTTAGACAGCTAGTAGGCTCAAAAGATGCTCAAAAAGTGTGGATTTCCTTAGAAAAGAGCTCAAAAATCCAAATGGTRGAGGTAGAAAAACGACAAGTCACCGGCTCGCTAGATATACGAAAAGTGATGCCTGGAAGTGAAACAATTCATACAATCGACATGGAAATGGCTAGTCAGAACCATGTAACATATCTAGGGCTTCTAGAAAGAAACAATGGAGATCAATTGTATATTGGAACGTCGAAAGGGTTGCTGGTGATTGCTCATGCCGCGACAGTAAGATTTTTATTTAATAAATCTAATTGAGAATTCATTTTTCAGCTCCAACCGTTGTCTGCATGCCGTCCGTTTGAAGGAGACATTACATCAATATGTATTCTAGAAGAACCTTCTAGAGAAGAAGAAAGTATACGTGGCAAAGCGACGACGTTGAGTACGGCGTCGTCGGAAAGCGGGTTGGGATGGGTGCGCGAGAGAGTTAGTGAAACTGTTGATCGGTGAGTATTTCAGAAAACTGTATTTAATCGCGCCGTAGGTGCGGCAAACAGATGACTGTTTTTTTTTCAAAATAAAAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNTGG</site>
                <isoschizomers>
                    <enzyme>AccB7I</enzyme>
                    <enzyme>PflBI</enzyme>
                    <enzyme>PflMI</enzyme>
                    <enzyme>Van91I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>497 277 226</canonical_bands>
                <polymorphic_bands>774 226</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>217 157 119 86 53 49 40 38 37 26 24 23 22 20 17 16 16 13 10 6 4 3 2 2</canonical_bands>
                <polymorphic_bands>217 157 119 86 59 53 49 40 38 26 24 23 20 17 16 16 13 10 6 4 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAGTCGGTAGTTAGACAGCTA</pcr_primer_p1>
		<pcr_primer_p2>GTTCCAATATACAATTGATCTCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACAAGTCGGTAGTTAGACAGCTAGTAGGCTCAAAAGATGCTCAAAAAGTGTGGATTTCCTTAGAAAAGAGCTCAAAAATCCAAATGGTGGAGGTAGAAAAACGACAAGTCACCGGCTCGCTAGATATACGAAAAGTGATGCCTGGAAGTGAAACAATTCATACAATCGACATGGAAATGGCTAGTCAGAACCATGTAACATATCTAGGGCTTCTAGAAAGAAACAATGGAGATCAATTGTATATTGGAAC</canonical_amplicon>
		<polymorphic_amplicon>ACAAGTCGGTAGTTAGACAGCTAGTAGGCTCAAAAGATGCTCAAAAAGTGTGGATTTCCTTAGAAAAGAGCTCAAAAATCCAAATGGTRGAGGTAGAAAAACGACAAGTCACCGGCTCGCTAGATATACGAAAAGTGATGCCTGGAAGTGAAACAATTCATACAATCGACATGGAAATGGCTAGTCAGAACCATGTAACATATCTAGGGCTTCTAGAAAGAAACAATGGAGATCAATTGTATATTGGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37293</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>49056</contig_pos>
        <strand>+</strand>
        <context>TAGAAAAACG[A/T]CAAGTCACCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTCCTTAGAAAAGAGCTCAAAAATCCAAATGGTGGAGGTAGAAAAACG</left_flank>
        <right_flank>CAAGTCACCGGCTCGCTAGATATACGAAAAGTGATGCCTGGAAGTGAAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATATCAGTTTTATTACAAAAAAAGAACTTTCAAAAGGTTTTTTTGTGAAGAATTCGACCGAAAAAATTACTAACATTGAATAAAACATATAAAATCAGAATTTTCGCTATTTTCTAGCTAAAAATGATTCAAATCAATAAATTCTTATAAAATGCGAAAAAAACCATATTTTCAAAATAATTTTACAAAACGAGAGGAAAATGATGGAAACGTAATTTTTCAGGTATCTCATCTCGGAACCTTCGACTCTCCTTATGAAATCCACACATCCACATTCCTCGACAACGGATCAACACGGCAAATCTGGACAGGCCACTCAGAAGGACGCATTTCCATTCACCACTTGGCCTCCAATGACACCTTCAGCTTCTCGTCAAGTCTCTATCTCCCCGACGACAAGTCGGTAGTTAGACAGCTAGTAGGCTCAAAAGATGCTCAAAAAGTGTGGATTTCCTTAGAAAAGAGCTCAAAAATCCAAATGGTGGAGGTAGAAAAACGACAAGTCACCGGCTCGCTAGATATACGAAAAGTGATGCCTGGAAGTGAAACAATTCATACAATCGACATGGAAATGGCTAGTCAGAACCATGTAACATATCTAGGGCTTCTAGAAAGAAACAATGGAGATCAATTGTATATTGGAACGTCGAAAGGGTTGCTGGTGATTGCTCATGCCGCGACAGTAAGATTTTTATTTAATAAATCTAATTGAGAATTCATTTTTCAGCTCCAACCGTTGTCTGCATGCCGTCCGTTTGAAGGAGACATTACATCAATATGTATTCTAGAAGAACCTTCTAGAGAAGAAGAAAGTATACGTGGCAAAGCGACGACGTTGAGTACGGCGTCGTCGGAAAGCGGGTTGGGATGGGTGCGCGAGAGAGTTAGTGAAACTGTTGATCGGTGAGTATTTCAGAAAACTGTATTTAATCGCGCCGTAGGTGCGGCAAACAGATGACTGTTTTTTTTTCAAAATAAAAATTTTATTTTCTAAAAGTC</canonical>
            <polymorphic>GATATCAGTTTTATTACAAAAAAAGAACTTTCAAAAGGTTTTTTTGTGAAGAATTCGACCGAAAAAATTACTAACATTGAATAAAACATATAAAATCAGAATTTTCGCTATTTTCTAGCTAAAAATGATTCAAATCAATAAATTCTTATAAAATGCGAAAAAAACCATATTTTCAAAATAATTTTACAAAACGAGAGGAAAATGATGGAAACGTAATTTTTCAGGTATCTCATCTCGGAACCTTCGACTCTCCTTATGAAATCCACACATCCACATTCCTCGACAACGGATCAACACGGCAAATCTGGACAGGCCACTCAGAAGGACGCATTTCCATTCACCACTTGGCCTCCAATGACACCTTCAGCTTCTCGTCAAGTCTCTATCTCCCCGACGACAAGTCGGTAGTTAGACAGCTAGTAGGCTCAAAAGATGCTCAAAAAGTGTGGATTTCCTTAGAAAAGAGCTCAAAAATCCAAATGGTGGAGGTAGAAAAACGWCAAGTCACCGGCTCGCTAGATATACGAAAAGTGATGCCTGGAAGTGAAACAATTCATACAATCGACATGGAAATGGCTAGTCAGAACCATGTAACATATCTAGGGCTTCTAGAAAGAAACAATGGAGATCAATTGTATATTGGAACGTCGAAAGGGTTGCTGGTGATTGCTCATGCCGCGACAGTAAGATTTTTATTTAATAAATCTAATTGAGAATTCATTTTTCAGCTCCAACCGTTGTCTGCATGCCGTCCGTTTGAAGGAGACATTACATCAATATGTATTCTAGAAGAACCTTCTAGAGAAGAAGAAAGTATACGTGGCAAAGCGACGACGTTGAGTACGGCGTCGTCGGAAAGCGGGTTGGGATGGGTGCGCGAGAGAGTTAGTGAAACTGTTGATCGGTGAGTATTTCAGAAAACTGTATTTAATCGCGCCGTAGGTGCGGCAAACAGATGACTGTTTTTTTTTCAAAATAAAAATTTTATTTTCTAAAAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAGTCGGTAGTTAGACAGCTA</pcr_primer_p1>
		<pcr_primer_p2>GTTCCAATATACAATTGATCTCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACAAGTCGGTAGTTAGACAGCTAGTAGGCTCAAAAGATGCTCAAAAAGTGTGGATTTCCTTAGAAAAGAGCTCAAAAATCCAAATGGTGGAGGTAGAAAAACGACAAGTCACCGGCTCGCTAGATATACGAAAAGTGATGCCTGGAAGTGAAACAATTCATACAATCGACATGGAAATGGCTAGTCAGAACCATGTAACATATCTAGGGCTTCTAGAAAGAAACAATGGAGATCAATTGTATATTGGAAC</canonical_amplicon>
		<polymorphic_amplicon>ACAAGTCGGTAGTTAGACAGCTAGTAGGCTCAAAAGATGCTCAAAAAGTGTGGATTTCCTTAGAAAAGAGCTCAAAAATCCAAATGGTGGAGGTAGAAAAACGWCAAGTCACCGGCTCGCTAGATATACGAAAAGTGATGCCTGGAAGTGAAACAATTCATACAATCGACATGGAAATGGCTAGTCAGAACCATGTAACATATCTAGGGCTTCTAGAAAGAAACAATGGAGATCAATTGTATATTGGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37294</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>49177</contig_pos>
        <strand>+</strand>
        <context>AGAAAGAAAC[A/G]ATGGAGATCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATGGCTAGTCAGAACCATGTAACATATCTAGGGCTTCTAGAAAGAAAC</left_flank>
        <right_flank>ATGGAGATCAATTGTATATTGGAACGTCGAAAGGGTTGCTGGTGATTGCT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATGATTCAAATCAATAAATTCTTATAAAATGCGAAAAAAACCATATTTTCAAAATAATTTTACAAAACGAGAGGAAAATGATGGAAACGTAATTTTTCAGGTATCTCATCTCGGAACCTTCGACTCTCCTTATGAAATCCACACATCCACATTCCTCGACAACGGATCAACACGGCAAATCTGGACAGGCCACTCAGAAGGACGCATTTCCATTCACCACTTGGCCTCCAATGACACCTTCAGCTTCTCGTCAAGTCTCTATCTCCCCGACGACAAGTCGGTAGTTAGACAGCTAGTAGGCTCAAAAGATGCTCAAAAAGTGTGGATTTCCTTAGAAAAGAGCTCAAAAATCCAAATGGTGGAGGTAGAAAAACGACAAGTCACCGGCTCGCTAGATATACGAAAAGTGATGCCTGGAAGTGAAACAATTCATACAATCGACATGGAAATGGCTAGTCAGAACCATGTAACATATCTAGGGCTTCTAGAAAGAAACAATGGAGATCAATTGTATATTGGAACGTCGAAAGGGTTGCTGGTGATTGCTCATGCCGCGACAGTAAGATTTTTATTTAATAAATCTAATTGAGAATTCATTTTTCAGCTCCAACCGTTGTCTGCATGCCGTCCGTTTGAAGGAGACATTACATCAATATGTATTCTAGAAGAACCTTCTAGAGAAGAAGAAAGTATACGTGGCAAAGCGACGACGTTGAGTACGGCGTCGTCGGAAAGCGGGTTGGGATGGGTGCGCGAGAGAGTTAGTGAAACTGTTGATCGGTGAGTATTTCAGAAAACTGTATTTAATCGCGCCGTAGGTGCGGCAAACAGATGACTGTTTTTTTTTCAAAATAAAAATTTTATTTTCTAAAAGTCTTTTTTCAGTTTCCGCTCGAGCTCAGCCACGGTCGAAACCCAAGGAGCCGCGCTTCTTGTGTGCGTTGGCCGCCAATTTCGAAGTCTGTCCCATCGCTTCGTCTCTGAACAAAAACTCGCC</canonical>
            <polymorphic>AAAATGATTCAAATCAATAAATTCTTATAAAATGCGAAAAAAACCATATTTTCAAAATAATTTTACAAAACGAGAGGAAAATGATGGAAACGTAATTTTTCAGGTATCTCATCTCGGAACCTTCGACTCTCCTTATGAAATCCACACATCCACATTCCTCGACAACGGATCAACACGGCAAATCTGGACAGGCCACTCAGAAGGACGCATTTCCATTCACCACTTGGCCTCCAATGACACCTTCAGCTTCTCGTCAAGTCTCTATCTCCCCGACGACAAGTCGGTAGTTAGACAGCTAGTAGGCTCAAAAGATGCTCAAAAAGTGTGGATTTCCTTAGAAAAGAGCTCAAAAATCCAAATGGTGGAGGTAGAAAAACGACAAGTCACCGGCTCGCTAGATATACGAAAAGTGATGCCTGGAAGTGAAACAATTCATACAATCGACATGGAAATGGCTAGTCAGAACCATGTAACATATCTAGGGCTTCTAGAAAGAAACRATGGAGATCAATTGTATATTGGAACGTCGAAAGGGTTGCTGGTGATTGCTCATGCCGCGACAGTAAGATTTTTATTTAATAAATCTAATTGAGAATTCATTTTTCAGCTCCAACCGTTGTCTGCATGCCGTCCGTTTGAAGGAGACATTACATCAATATGTATTCTAGAAGAACCTTCTAGAGAAGAAGAAAGTATACGTGGCAAAGCGACGACGTTGAGTACGGCGTCGTCGGAAAGCGGGTTGGGATGGGTGCGCGAGAGAGTTAGTGAAACTGTTGATCGGTGAGTATTTCAGAAAACTGTATTTAATCGCGCCGTAGGTGCGGCAAACAGATGACTGTTTTTTTTTCAAAATAAAAATTTTATTTTCTAAAAGTCTTTTTTCAGTTTCCGCTCGAGCTCAGCCACGGTCGAAACCCAAGGAGCCGCGCTTCTTGTGTGCGTTGGCCGCCAATTTCGAAGTCTGTCCCATCGCTTCGTCTCTGAACAAAAACTCGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACAATTCATACAATCGACAT</pcr_primer_p1>
		<pcr_primer_p2>ATTGATGTAATGTCTCCTTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>GAAACAATTCATACAATCGACATGGAAATGGCTAGTCAGAACCATGTAACATATCTAGGGCTTCTAGAAAGAAACAATGGAGATCAATTGTATATTGGAACGTCGAAAGGGTTGCTGGTGATTGCTCATGCCGCGACAGTAAGATTTTTATTTAATAAATCTAATTGAGAATTCATTTTTCAGCTCCAACCGTTGTCTGCATGCCGTCCGTTTGAAGGAGACATTACATCAAT</canonical_amplicon>
		<polymorphic_amplicon>GAAACAATTCATACAATCGACATGGAAATGGCTAGTCAGAACCATGTAACATATCTAGGGCTTCTAGAAAGAAACRATGGAGATCAATTGTATATTGGAACGTCGAAAGGGTTGCTGGTGATTGCTCATGCCGCGACAGTAAGATTTTTATTTAATAAATCTAATTGAGAATTCATTTTTCAGCTCCAACCGTTGTCTGCATGCCGTCCGTTTGAAGGAGACATTACATCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37295</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>55225</contig_pos>
        <strand></strand>
        <context>caattaaaaa[A/C]gttttggttg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTTGTTTCACATTCTCCAAAAAAATGTGGACGTTTTGTCAATTAAAAA</left_flank>
        <right_flank>GTTTTGGTTGCATTATGATAGACATTTTCTCAGTTGACACATTTTTAATA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTGGGGTCATAAGAAATATCAAGAAGTGTGTCAACTGATAAAACGTTGGTGATTTTATGATAAACAATTTATCAGTTGACAAATTTTTTATATCTTTTGAAGGAACCGAGATATTTGAGCTGAAGCGCATACATGAATGGCAGGCTTCTATTAGATCATTTACGATGAAAATGAGCAATTTAAAGGCTCACCATGACAACCCATGTGAATCTGTGTATGTTGTTCCTCCGTCACTTTGCATTAAAACCNNNNNNNNNNNNATTTAGGGGTCATTGGGGTACAAAGCAATTTAGGTGTACAAAATCATCAATTCGAGGGTACAAAACACCGGAAAAAAGGCTCAGTTTGTACACCCGAATTGTGGATTTTGTACCCTTAAATTACTTTGTACCCCCTTGTACCCCCGAATTGTTGTACCCTCCGAATTATGGGCCTCAACTTTGAGCCAATTTGTTTCACATTCTCCAAAAAAATGTGGACGTTTTGTCAATTAAAAAAGTTTTGGTTGCATTATGATAGACATTTTCTCAGTTGACACATTTTTAATAACTTTAATGAGAACCGAGATAATTGAGCTGAAAGGGTATATGATGGGCGTCTTTGAGAACAAATACGGTTAATCACTTTGAGCTCAATTGACACAGTATTTGTGAGAAATATCAACAATCTGTCCACTGCAAAAATGTTGGTCACATCATGATAAACATGTTATCAGTTGACCAATTTCCGATATCTTTGACTGGAACTGAGATAAATTGAGCTCAAAATGCCAGTATAGGGTGGGCTTCTGTCATAGCAAATACGGTACATTAAACTTGACACTGTAGGGGCTCTTTTATTACAGGTATTTGAGCTCTAAACTTTTCAAATTCTAAATTTACAGCACATGGCTTCCCATTCCACATTTCTCAACAGTATGTTCAATATTCCTATGAATGAAGCAGGTGGAAACGTTTTCGATTGTGGACCCATCCATGCGGACGTCTTCCAAGATCTTC</canonical>
            <polymorphic>CATTGGGGTCATAAGAAATATCAAGAAGTGTGTCAACTGATAAAACGTTGGTGATTTTATGATAAACAATTTATCAGTTGACAAATTTTTTATATCTTTTGAAGGAACCGAGATATTTGAGCTGAAGCGCATACATGAATGGCAGGCTTCTATTAGATCATTTACGATGAAAATGAGCAATTTAAAGGCTCACCATGACAACCCATGTGAATCTGTGTATGTTGTTCCTCCGTCACTTTGCATTAAAACCNNNNNNNNNNNNATTTAGGGGTCATTGGGGTACAAAGCAATTTAGGTGTACAAAATCATCAATTCGAGGGTACAAAACACCGGAAAAAAGGCTCAGTTTGTACACCCGAATTGTGGATTTTGTACCCTTAAATTACTTTGTACCCCCTTGTACCCCCGAATTGTTGTACCCTCCGAATTATGGGCCTCAACTTTGAGCCAATTTGTTTCACATTCTCCAAAAAAATGTGGACGTTTTGTCAATTAAAAAMGTTTTGGTTGCATTATGATAGACATTTTCTCAGTTGACACATTTTTAATAACTTTAATGAGAACCGAGATAATTGAGCTGAAAGGGTATATGATGGGCGTCTTTGAGAACAAATACGGTTAATCACTTTGAGCTCAATTGACACAGTATTTGTGAGAAATATCAACAATCTGTCCACTGCAAAAATGTTGGTCACATCATGATAAACATGTTATCAGTTGACCAATTTCCGATATCTTTGACTGGAACTGAGATAAATTGAGCTCAAAATGCCAGTATAGGGTGGGCTTCTGTCATAGCAAATACGGTACATTAAACTTGACACTGTAGGGGCTCTTTTATTACAGGTATTTGAGCTCTAAACTTTTCAAATTCTAAATTTACAGCACATGGCTTCCCATTCCACATTTCTCAACAGTATGTTCAATATTCCTATGAATGAAGCAGGTGGAAACGTTTTCGATTGTGGACCCATCCATGCGGACGTCTTCCAAGATCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTGTACCCTCCGAATTAT</pcr_primer_p1>
		<pcr_primer_p2>ATTAACCGTATTTGTTCTCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>212</pcr_amplicon_size>
		<canonical_amplicon>TGTTGTACCCTCCGAATTATGGGCCTCAACTTTGAGCCAATTTGTTTCACATTCTCCAAAAAAATGTGGACGTTTTGTCAATTAAAAAAGTTTTGGTTGCATTATGATAGACATTTTCTCAGTTGACACATTTTTAATAACTTTAATGAGAACCGAGATAATTGAGCTGAAAGGGTATATGATGGGCGTCTTTGAGAACAAATACGGTTAAT</canonical_amplicon>
		<polymorphic_amplicon>TGTTGTACCCTCCGAATTATGGGCCTCAACTTTGAGCCAATTTGTTTCACATTCTCCAAAAAAATGTGGACGTTTTGTCAATTAAAAAMGTTTTGGTTGCATTATGATAGACATTTTCTCAGTTGACACATTTTTAATAACTTTAATGAGAACCGAGATAATTGAGCTGAAAGGGTATATGATGGGCGTCTTTGAGAACAAATACGGTTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37296</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>55266</contig_pos>
        <strand></strand>
        <context>cagttgacac[A/T]tttttaataa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTAAAAAAGTTTTGGTTGCATTATGATAGACATTTTCTCAGTTGACAC</left_flank>
        <right_flank>TTTTTAATAACTTTAATGAGAACCGAGATAATTGAGCTGAAAGGGTATAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACGTTGGTGATTTTATGATAAACAATTTATCAGTTGACAAATTTTTTATATCTTTTGAAGGAACCGAGATATTTGAGCTGAAGCGCATACATGAATGGCAGGCTTCTATTAGATCATTTACGATGAAAATGAGCAATTTAAAGGCTCACCATGACAACCCATGTGAATCTGTGTATGTTGTTCCTCCGTCACTTTGCATTAAAACCNNNNNNNNNNNNATTTAGGGGTCATTGGGGTACAAAGCAATTTAGGTGTACAAAATCATCAATTCGAGGGTACAAAACACCGGAAAAAAGGCTCAGTTTGTACACCCGAATTGTGGATTTTGTACCCTTAAATTACTTTGTACCCCCTTGTACCCCCGAATTGTTGTACCCTCCGAATTATGGGCCTCAACTTTGAGCCAATTTGTTTCACATTCTCCAAAAAAATGTGGACGTTTTGTCAATTAAAAAAGTTTTGGTTGCATTATGATAGACATTTTCTCAGTTGACACATTTTTAATAACTTTAATGAGAACCGAGATAATTGAGCTGAAAGGGTATATGATGGGCGTCTTTGAGAACAAATACGGTTAATCACTTTGAGCTCAATTGACACAGTATTTGTGAGAAATATCAACAATCTGTCCACTGCAAAAATGTTGGTCACATCATGATAAACATGTTATCAGTTGACCAATTTCCGATATCTTTGACTGGAACTGAGATAAATTGAGCTCAAAATGCCAGTATAGGGTGGGCTTCTGTCATAGCAAATACGGTACATTAAACTTGACACTGTAGGGGCTCTTTTATTACAGGTATTTGAGCTCTAAACTTTTCAAATTCTAAATTTACAGCACATGGCTTCCCATTCCACATTTCTCAACAGTATGTTCAATATTCCTATGAATGAAGCAGGTGGAAACGTTTTCGATTGTGGACCCATCCATGCGGACGTCTTCCAAGATCTTCTAGAACTTCTATACGGAGAAGATACCATTTCAAGTGAGTTT</canonical>
            <polymorphic>AAAACGTTGGTGATTTTATGATAAACAATTTATCAGTTGACAAATTTTTTATATCTTTTGAAGGAACCGAGATATTTGAGCTGAAGCGCATACATGAATGGCAGGCTTCTATTAGATCATTTACGATGAAAATGAGCAATTTAAAGGCTCACCATGACAACCCATGTGAATCTGTGTATGTTGTTCCTCCGTCACTTTGCATTAAAACCNNNNNNNNNNNNATTTAGGGGTCATTGGGGTACAAAGCAATTTAGGTGTACAAAATCATCAATTCGAGGGTACAAAACACCGGAAAAAAGGCTCAGTTTGTACACCCGAATTGTGGATTTTGTACCCTTAAATTACTTTGTACCCCCTTGTACCCCCGAATTGTTGTACCCTCCGAATTATGGGCCTCAACTTTGAGCCAATTTGTTTCACATTCTCCAAAAAAATGTGGACGTTTTGTCAATTAAAAAAGTTTTGGTTGCATTATGATAGACATTTTCTCAGTTGACACWTTTTTAATAACTTTAATGAGAACCGAGATAATTGAGCTGAAAGGGTATATGATGGGCGTCTTTGAGAACAAATACGGTTAATCACTTTGAGCTCAATTGACACAGTATTTGTGAGAAATATCAACAATCTGTCCACTGCAAAAATGTTGGTCACATCATGATAAACATGTTATCAGTTGACCAATTTCCGATATCTTTGACTGGAACTGAGATAAATTGAGCTCAAAATGCCAGTATAGGGTGGGCTTCTGTCATAGCAAATACGGTACATTAAACTTGACACTGTAGGGGCTCTTTTATTACAGGTATTTGAGCTCTAAACTTTTCAAATTCTAAATTTACAGCACATGGCTTCCCATTCCACATTTCTCAACAGTATGTTCAATATTCCTATGAATGAAGCAGGTGGAAACGTTTTCGATTGTGGACCCATCCATGCGGACGTCTTCCAAGATCTTCTAGAACTTCTATACGGAGAAGATACCATTTCAAGTGAGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTGTACCCTCCGAATTAT</pcr_primer_p1>
		<pcr_primer_p2>ATTAACCGTATTTGTTCTCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>212</pcr_amplicon_size>
		<canonical_amplicon>TGTTGTACCCTCCGAATTATGGGCCTCAACTTTGAGCCAATTTGTTTCACATTCTCCAAAAAAATGTGGACGTTTTGTCAATTAAAAAAGTTTTGGTTGCATTATGATAGACATTTTCTCAGTTGACACATTTTTAATAACTTTAATGAGAACCGAGATAATTGAGCTGAAAGGGTATATGATGGGCGTCTTTGAGAACAAATACGGTTAAT</canonical_amplicon>
		<polymorphic_amplicon>TGTTGTACCCTCCGAATTATGGGCCTCAACTTTGAGCCAATTTGTTTCACATTCTCCAAAAAAATGTGGACGTTTTGTCAATTAAAAAAGTTTTGGTTGCATTATGATAGACATTTTCTCAGTTGACACWTTTTTAATAACTTTAATGAGAACCGAGATAATTGAGCTGAAAGGGTATATGATGGGCGTCTTTGAGAACAAATACGGTTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37297</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>55499</contig_pos>
        <strand></strand>
        <context>tcaaaatgcc[A/C]gtatagggtg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTTCCGATATCTTTGACTGGAACTGAGATAAATTGAGCTCAAAATGCC</left_flank>
        <right_flank>GTATAGGGTGGGCTTCTGTCATAGCAAATACGGTACATTAAACTTGACAC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGGGTACAAAGCAATTTAGGTGTACAAAATCATCAATTCGAGGGTACAAAACACCGGAAAAAAGGCTCAGTTTGTACACCCGAATTGTGGATTTTGTACCCTTAAATTACTTTGTACCCCCTTGTACCCCCGAATTGTTGTACCCTCCGAATTATGGGCCTCAACTTTGAGCCAATTTGTTTCACATTCTCCAAAAAAATGTGGACGTTTTGTCAATTAAAAAAGTTTTGGTTGCATTATGATAGACATTTTCTCAGTTGACACATTTTTAATAACTTTAATGAGAACCGAGATAATTGAGCTGAAAGGGTATATGATGGGCGTCTTTGAGAACAAATACGGTTAATCACTTTGAGCTCAATTGACACAGTATTTGTGAGAAATATCAACAATCTGTCCACTGCAAAAATGTTGGTCACATCATGATAAACATGTTATCAGTTGACCAATTTCCGATATCTTTGACTGGAACTGAGATAAATTGAGCTCAAAATGCCAGTATAGGGTGGGCTTCTGTCATAGCAAATACGGTACATTAAACTTGACACTGTAGGGGCTCTTTTATTACAGGTATTTGAGCTCTAAACTTTTCAAATTCTAAATTTACAGCACATGGCTTCCCATTCCACATTTCTCAACAGTATGTTCAATATTCCTATGAATGAAGCAGGTGGAAACGTTTTCGATTGTGGACCCATCCATGCGGACGTCTTCCAAGATCTTCTAGAACTTCTATACGGAGAAGATACCATTTCAAGTGAGTTTAGAACAACCAGGCAACGGTTGAGCAATATGCCCAAACCCTGGCACATAATTTGGAGGGTGCAAGGGGGTTTAAAGTAGTCTATAGGTTTAAAATTCGAATTTTTCAGGTCTGATCCCCGAATTGAGGATTATGTACCCCATAAATTGCTTTGTACCCCAATGCCCCTAAAATTGCTGTACCTTCCGAATTAATTGCCCCAAACTTTGCATGCCTAATTTGTTCCAAAAAAAAA</canonical>
            <polymorphic>TTGGGGTACAAAGCAATTTAGGTGTACAAAATCATCAATTCGAGGGTACAAAACACCGGAAAAAAGGCTCAGTTTGTACACCCGAATTGTGGATTTTGTACCCTTAAATTACTTTGTACCCCCTTGTACCCCCGAATTGTTGTACCCTCCGAATTATGGGCCTCAACTTTGAGCCAATTTGTTTCACATTCTCCAAAAAAATGTGGACGTTTTGTCAATTAAAAAAGTTTTGGTTGCATTATGATAGACATTTTCTCAGTTGACACATTTTTAATAACTTTAATGAGAACCGAGATAATTGAGCTGAAAGGGTATATGATGGGCGTCTTTGAGAACAAATACGGTTAATCACTTTGAGCTCAATTGACACAGTATTTGTGAGAAATATCAACAATCTGTCCACTGCAAAAATGTTGGTCACATCATGATAAACATGTTATCAGTTGACCAATTTCCGATATCTTTGACTGGAACTGAGATAAATTGAGCTCAAAATGCCMGTATAGGGTGGGCTTCTGTCATAGCAAATACGGTACATTAAACTTGACACTGTAGGGGCTCTTTTATTACAGGTATTTGAGCTCTAAACTTTTCAAATTCTAAATTTACAGCACATGGCTTCCCATTCCACATTTCTCAACAGTATGTTCAATATTCCTATGAATGAAGCAGGTGGAAACGTTTTCGATTGTGGACCCATCCATGCGGACGTCTTCCAAGATCTTCTAGAACTTCTATACGGAGAAGATACCATTTCAAGTGAGTTTAGAACAACCAGGCAACGGTTGAGCAATATGCCCAAACCCTGGCACATAATTTGGAGGGTGCAAGGGGGTTTAAAGTAGTCTATAGGTTTAAAATTCGAATTTTTCAGGTCTGATCCCCGAATTGAGGATTATGTACCCCATAAATTGCTTTGTACCCCAATGCCCCTAAAATTGCTGTACCTTCCGAATTAATTGCCCCAAACTTTGCATGCCTAATTTGTTCCAAAAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTTTGAGAACAAATACGGTTA</pcr_primer_p1>
		<pcr_primer_p2>CTGTAATAAAAGAGCCCCTACA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTCTTTGAGAACAAATACGGTTAATCACTTTGAGCTCAATTGACACAGTATTTGTGAGAAATATCAACAATCTGTCCACTGCAAAAATGTTGGTCACATCATGATAAACATGTTATCAGTTGACCAATTTCCGATATCTTTGACTGGAACTGAGATAAATTGAGCTCAAAATGCCAGTATAGGGTGGGCTTCTGTCATAGCAAATACGGTACATTAAACTTGACACTGTAGGGGCTCTTTTATTACAG</canonical_amplicon>
		<polymorphic_amplicon>GTCTTTGAGAACAAATACGGTTAATCACTTTGAGCTCAATTGACACAGTATTTGTGAGAAATATCAACAATCTGTCCACTGCAAAAATGTTGGTCACATCATGATAAACATGTTATCAGTTGACCAATTTCCGATATCTTTGACTGGAACTGAGATAAATTGAGCTCAAAATGCCMGTATAGGGTGGGCTTCTGTCATAGCAAATACGGTACATTAAACTTGACACTGTAGGGGCTCTTTTATTACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37298</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>60579</contig_pos>
        <strand></strand>
        <context>gcatttcatt[T/C]agacgatatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATT</left_flank>
        <right_flank>AGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGTAACCAAAAACGAAAAAAAGTTACATCGTTGATCTGTGGTTTTTTACAGACCACAACATTGGACGCATTCTTTCTTTCGCCTTTTTCTGTGGAGCTCGAACTGTGCTTGAAAAATGCGAACATTACTTGTTAAATGCCGAGAGTAACATTAAGATGAGAGAAAAACTCAATCTTTCGAACGATTATCATTTGGAAGAACTACAGGTGAGAATCTGATTCGTCTAAACTCATCAACAATTTTCAGGATTCGTTGGTTGATCGAATTACTGATGCCAAATTTCTCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTATATAATGTCGAGAAAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTTTCCTGGGTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTTCCATACGATTTTCAGTGATTTAGAAATTGGTTACAAGGTTTTGAGTTTGGATCTTTTTGGTGAGTTATTCTGCAAGGTCAAAGTTAAGTTCATAAGAAAATTTTAATTTCTTATAACCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGAT</canonical>
            <polymorphic>TGGGTAACCAAAAACGAAAAAAAGTTACATCGTTGATCTGTGGTTTTTTACAGACCACAACATTGGACGCATTCTTTCTTTCGCCTTTTTCTGTGGAGCTCGAACTGTGCTTGAAAAATGCGAACATTACTTGTTAAATGCCGAGAGTAACATTAAGATGAGAGAAAAACTCAATCTTTCGAACGATTATCATTTGGAAGAACTACAGGTGAGAATCTGATTCGTCTAAACTCATCAACAATTTTCAGGATTCGTTGGTTGATCGAATTACTGATGCCAAATTTCTCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTATATAATGTCGAGAAAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTYAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTTTCCTGGGTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTTCCATACGATTTTCAGTGATTTAGAAATTGGTTACAAGGTTTTGAGTTTGGATCTTTTTGGTGAGTTATTCTGCAAGGTCAAAGTTAAGTTCATAAGAAAATTTTAATTTCTTATAACCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGTATTGGATAGAATGGAGGT</pcr_primer_p1>
		<pcr_primer_p2>AGACAGGGAATTGAACTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCT</canonical_amplicon>
		<polymorphic_amplicon>AAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTYAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37299</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>60638</contig_pos>
        <strand>+</strand>
        <context>AGTTGCATTG[G/T]TTTTTACYGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTG</left_flank>
        <right_flank>TTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATTGGACGCATTCTTTCTTTCGCCTTTTTCTGTGGAGCTCGAACTGTGCTTGAAAAATGCGAACATTACTTGTTAAATGCCGAGAGTAACATTAAGATGAGAGAAAAACTCAATCTTTCGAACGATTATCATTTGGAAGAACTACAGGTGAGAATCTGATTCGTCTAAACTCATCAACAATTTTCAGGATTCGTTGGTTGATCGAATTACTGATGCCAAATTTCTCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTATATAATGTCGAGAAAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTTTCCTGGGTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTTCCATACGATTTTCAGTGATTTAGAAATTGGTTACAAGGTTTTGAGTTTGGATCTTTTTGGTGAGTTATTCTGCAAGGTCAAAGTTAAGTTCATAAGAAAATTTTAATTTCTTATAACCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGGCACAGTACAGTCAGAAAATAACAATGGACACCAAACCATAACTCTCTGTTACG</canonical>
            <polymorphic>ACATTGGACGCATTCTTTCTTTCGCCTTTTTCTGTGGAGCTCGAACTGTGCTTGAAAAATGCGAACATTACTTGTTAAATGCCGAGAGTAACATTAAGATGAGAGAAAAACTCAATCTTTCGAACGATTATCATTTGGAAGAACTACAGGTGAGAATCTGATTCGTCTAAACTCATCAACAATTTTCAGGATTCGTTGGTTGATCGAATTACTGATGCCAAATTTCTCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTATATAATGTCGAGAAAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGKTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTTTCCTGGGTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTTCCATACGATTTTCAGTGATTTAGAAATTGGTTACAAGGTTTTGAGTTTGGATCTTTTTGGTGAGTTATTCTGCAAGGTCAAAGTTAAGTTCATAAGAAAATTTTAATTTCTTATAACCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGGCACAGTACAGTCAGAAAATAACAATGGACACCAAACCATAACTCTCTGTTACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGTATTGGATAGAATGGAGGT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTACAGAAATGGATCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>AAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGKTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37300</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>60646</contig_pos>
        <strand>+</strand>
        <context>TGKTTTTTAC[C/T]GTGTCAAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTAC</left_flank>
        <right_flank>GTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCATTCTTTCTTTCGCCTTTTTCTGTGGAGCTCGAACTGTGCTTGAAAAATGCGAACATTACTTGTTAAATGCCGAGAGTAACATTAAGATGAGAGAAAAACTCAATCTTTCGAACGATTATCATTTGGAAGAACTACAGGTGAGAATCTGATTCGTCTAAACTCATCAACAATTTTCAGGATTCGTTGGTTGATCGAATTACTGATGCCAAATTTCTCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTATATAATGTCGAGAAAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTTTCCTGGGTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTTCCATACGATTTTCAGTGATTTAGAAATTGGTTACAAGGTTTTGAGTTTGGATCTTTTTGGTGAGTTATTCTGCAAGGTCAAAGTTAAGTTCATAAGAAAATTTTAATTTCTTATAACCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGGCACAGTACAGTCAGAAAATAACAATGGACACCAAACCATAACTCTCTGTTACGGTACAAGC</canonical>
            <polymorphic>CGCATTCTTTCTTTCGCCTTTTTCTGTGGAGCTCGAACTGTGCTTGAAAAATGCGAACATTACTTGTTAAATGCCGAGAGTAACATTAAGATGAGAGAAAAACTCAATCTTTCGAACGATTATCATTTGGAAGAACTACAGGTGAGAATCTGATTCGTCTAAACTCATCAACAATTTTCAGGATTCGTTGGTTGATCGAATTACTGATGCCAAATTTCTCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTATATAATGTCGAGAAAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACYGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTTTCCTGGGTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTTCCATACGATTTTCAGTGATTTAGAAATTGGTTACAAGGTTTTGAGTTTGGATCTTTTTGGTGAGTTATTCTGCAAGGTCAAAGTTAAGTTCATAAGAAAATTTTAATTTCTTATAACCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGGCACAGTACAGTCAGAAAATAACAATGGACACCAAACCATAACTCTCTGTTACGGTACAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGTATTGGATAGAATGGAGGT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTACAGAAATGGATCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>AAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACYGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37301</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>60857</contig_pos>
        <strand>+</strand>
        <context>TTATCAATGT[A/T]TCCTGGRTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGT</left_flank>
        <right_flank>TCCTGGGTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTCTCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTATATAATGTCGAGAAAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTTTCCTGGGTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTTCCATACGATTTTCAGTGATTTAGAAATTGGTTACAAGGTTTTGAGTTTGGATCTTTTTGGTGAGTTATTCTGCAAGGTCAAAGTTAAGTTCATAAGAAAATTTTAATTTCTTATAACCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGGCACAGTACAGTCAGAAAATAACAATGGACACCAAACCATAACTCTCTGTTACGGTACAAGCGAGAAAGCGACCGTTCTTCCAAGCGGCGCCGACTCCTCGTTTCATAATCGTTTTAGTGGCAGTAGACGACAAGCCCGCCTGTGGTGCACAGGTCCTGGGCGCGCATACGCATAATGGATGGGCGACGGAGGACGCGCCGATGAATTGGGTACAGGGAAAGGACGCCGGTATGGGGCATATACGGGGCATATGGGGCACACCACCGCCGCAA</canonical>
            <polymorphic>AAATTTCTCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTATATAATGTCGAGAAAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTWTCCTGGGTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTTCCATACGATTTTCAGTGATTTAGAAATTGGTTACAAGGTTTTGAGTTTGGATCTTTTTGGTGAGTTATTCTGCAAGGTCAAAGTTAAGTTCATAAGAAAATTTTAATTTCTTATAACCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGGCACAGTACAGTCAGAAAATAACAATGGACACCAAACCATAACTCTCTGTTACGGTACAAGCGAGAAAGCGACCGTTCTTCCAAGCGGCGCCGACTCCTCGTTTCATAATCGTTTTAGTGGCAGTAGACGACAAGCCCGCCTGTGGTGCACAGGTCCTGGGCGCGCATACGCATAATGGATGGGCGACGGAGGACGCGCCGATGAATTGGGTACAGGGAAAGGACGCCGGTATGGGGCATATACGGGGCATATGGGGCACACCACCGCCGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACTAATTCCCATTCACATTATC</pcr_primer_p1>
		<pcr_primer_p2>CAAAAAGATCCAAACTCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTTTCCTGGGTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTTCCATACGATTTTCAGTGATTTAGAAATTGGTTACAAGGTTTTGAGTTTGGATCTTTTTG</canonical_amplicon>
		<polymorphic_amplicon>CACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTWTCCTGGGTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTTCCATACGATTTTCAGTGATTTAGAAATTGGTTACAAGGTTTTGAGTTTGGATCTTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37302</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>60864</contig_pos>
        <strand>+</strand>
        <context>TGTWTCCTGG[A/G]TTTTAACTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTTTCCTGG</left_flank>
        <right_flank>TTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTT</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTATATAATGTCGAGAAAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTTTCCTGGGTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTTCCATACGATTTTCAGTGATTTAGAAATTGGTTACAAGGTTTTGAGTTTGGATCTTTTTGGTGAGTTATTCTGCAAGGTCAAAGTTAAGTTCATAAGAAAATTTTAATTTCTTATAACCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGGCACAGTACAGTCAGAAAATAACAATGGACACCAAACCATAACTCTCTGTTACGGTACAAGCGAGAAAGCGACCGTTCTTCCAAGCGGCGCCGACTCCTCGTTTCATAATCGTTTTAGTGGCAGTAGACGACAAGCCCGCCTGTGGTGCACAGGTCCTGGGCGCGCATACGCATAATGGATGGGCGACGGAGGACGCGCCGATGAATTGGGTACAGGGAAAGGACGCCGGTATGGGGCATATACGGGGCATATGGGGCACACCACCGCCGCAAAGCATCT</canonical>
            <polymorphic>TCGAGTCCTTCCTCTTCGAAAAAGTTCTTCGAAGTAAAAATTATATAATGTCGAGAAAAGTATTGGATAGAATGGAGGTGCTGCGGGGAGAACCACGGTGTTGTTTCCGGATGTTTCCAAGAAATTAGCGACTCAGCAGTTCAACTTGAAGCTTTCGAGTCGAGACCAAACGATAATTATACTGTAGAATTACGTTTATCGCACGCATTTCATTTAGACGATATTAAAACACGGTGAAACACCTGCTCAGTAGATGATAATATAGTTGCATTGTTTTTTACAGTGTCAAGTTCAATTCCCTGTCTTGCAATATTATAACTTGCCTTCTAAAATACCCTTTGATCCATTTCTGTAAAAATGTCCACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTTTCCTGGRTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTTCCATACGATTTTCAGTGATTTAGAAATTGGTTACAAGGTTTTGAGTTTGGATCTTTTTGGTGAGTTATTCTGCAAGGTCAAAGTTAAGTTCATAAGAAAATTTTAATTTCTTATAACCTTAAAGGAGGCCAGACATGAAAATTTTCAAAATTCTAGTTTTCTGATATATGGCACAGTACAGTCAGAAAATAACAATGGACACCAAACCATAACTCTCTGTTACGGTACAAGCGAGAAAGCGACCGTTCTTCCAAGCGGCGCCGACTCCTCGTTTCATAATCGTTTTAGTGGCAGTAGACGACAAGCCCGCCTGTGGTGCACAGGTCCTGGGCGCGCATACGCATAATGGATGGGCGACGGAGGACGCGCCGATGAATTGGGTACAGGGAAAGGACGCCGGTATGGGGCATATACGGGGCATATGGGGCACACCACCGCCGCAAAGCATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>402 381 124 93</canonical_bands>
                <polymorphic_bands>783 124 93</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACTAATTCCCATTCACATTATC</pcr_primer_p1>
		<pcr_primer_p2>CAAAAAGATCCAAACTCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTTTCCTGGGTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTTCCATACGATTTTCAGTGATTTAGAAATTGGTTACAAGGTTTTGAGTTTGGATCTTTTTG</canonical_amplicon>
		<polymorphic_amplicon>CACTAATTCCCATTCACATTATCAACCATTTTTTACTGGAAGGTCCAACTCTCAATTCAATGGATTTAAATAGCTTTTATCATAATAAAACTCTTATATTTTTGAAATTTTTCTTCACATTTATCAATGTTTCCTGGRTTTTAACTCCCTAAAATATCTGCTTATATATACTCTCTTTTAATTTTTTTCCATACGATTTTCAGTGATTTAGAAATTGGTTACAAGGTTTTGAGTTTGGATCTTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37305</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>71604</contig_pos>
        <strand></strand>
        <context>ATGTTTGACA[G/T]CAGTAATGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCGAATCAGTTACGGAATGTGCATTTAGTCCTTTTGCCATGTTTGACA</left_flank>
        <right_flank>CAGTAATGTAGTAGGGAATTCGGCTCGAACAAACTTCCTTTGCATGACGC</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAGATTTCACTGTACACATTGGCCAGGTAGAACATCTCAGCTCTTGTCATCGGAGGAGTGTACTCACAAAGAACTTGATGCTTCTGATTGGGATCATCCAGGAGGAGATCGCCCGATCTGGCATCATACTTGTATGCTCCCGCGTCCACATAGAATGCTTTATAGTTGCCAGGATTTTCAAAATAGTCTTTCAATTCTGGAACAGATACCCATGCATCATAGACGCCAGTGATATCCCATAAGTAGTTTTGTAGTCCGGAATAGTAGTAATTGGCCACTTGAGGTTTGAAATCTTTCACAAATTCATTATGACAGGCGGATTGAGCGTCTTGCCAAGTGAATCTAGCCTTTGTCACCTTATAACACTTTCCGTGGATCTGCTGGTATCCTTCGTTTTTGCATTTCAAATTGATTTCTGGAAATTAGAACAATTAAACTTAGGATTAATTTCGAATCAGTTACGGAATGTGCATTTAGTCCTTTTGCCATGTTTGACAGCAGTAATGTAGTAGGGAATTCGGCTCGAACAAACTTCCTTTGCATGACGCTAAAATCAAAGGATCAAATTTATCTTCATCTGGTTCTAAAGTTTAGAATCTAAACTCACTTCATCGTCAGATACAGTAGGAAGGTCTACAGTACACTTGTGTCCCTTATCCACGTCTCCAGGATCCACTAGATCGATAGATTCGCCACCCAAGAAAACGCATGTTTTCATAGAGCTGAGGTCGATGTCATTGACATACGTGTCTATAAAGTCAGACAACTTTGCTTGTTGAGTGACAGGAAGAAGAAGAGCGAAGAGGACAACGAATAGCTGCAAACGATGGGTTGCTGTAGCTATCTCGGATCCTCCAGAGTCCTTACCATTGTCTGCATTCTGAGTCGTTTATTTTCCGCTTTCAACGACACTTTTGTTGTACCGATATCGCTTGAGACTGAGCGCCAGTTGAGCGTTTTTGGCAAATTCGACATTGAGTGGAGTTTTCCAGAAACCT</canonical>
            <polymorphic>GATAGATTTCACTGTACACATTGGCCAGGTAGAACATCTCAGCTCTTGTCATCGGAGGAGTGTACTCACAAAGAACTTGATGCTTCTGATTGGGATCATCCAGGAGGAGATCGCCCGATCTGGCATCATACTTGTATGCTCCCGCGTCCACATAGAATGCTTTATAGTTGCCAGGATTTTCAAAATAGTCTTTCAATTCTGGAACAGATACCCATGCATCATAGACGCCAGTGATATCCCATAAGTAGTTTTGTAGTCCGGAATAGTAGTAATTGGCCACTTGAGGTTTGAAATCTTTCACAAATTCATTATGACAGGCGGATTGAGCGTCTTGCCAAGTGAATCTAGCCTTTGTCACCTTATAACACTTTCCGTGGATCTGCTGGTATCCTTCGTTTTTGCATTTCAAATTGATTTCTGGAAATTAGAACAATTAAACTTAGGATTAATTTCGAATCAGTTACGGAATGTGCATTTAGTCCTTTTGCCATGTTTGACAKCAGTAATGTAGTAGGGAATTCGGCTCGAACAAACTTCCTTTGCATGACGCTAAAATCAAAGGATCAAATTTATCTTCATCTGGTTCTAAAGTTTAGAATCTAAACTCACTTCATCGTCAGATACAGTAGGAAGGTCTACAGTACACTTGTGTCCCTTATCCACGTCTCCAGGATCCACTAGATCGATAGATTCGCCACCCAAGAAAACGCATGTTTTCATAGAGCTGAGGTCGATGTCATTGACATACGTGTCTATAAAGTCAGACAACTTTGCTTGTTGAGTGACAGGAAGAAGAAGAGCGAAGAGGACAACGAATAGCTGCAAACGATGGGTTGCTGTAGCTATCTCGGATCCTCCAGAGTCCTTACCATTGTCTGCATTCTGAGTCGTTTATTTTCCGCTTTCAACGACACTTTTGTTGTACCGATATCGCTTGAGACTGAGCGCCAGTTGAGCGTTTTTGGCAAATTCGACATTGAGTGGAGTTTTCCAGAAACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGCCTTTGTCACCTTATAACA</pcr_primer_p1>
		<pcr_primer_p2>AAACTTTAGAACCAGATGAAGATAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAGCCTTTGTCACCTTATAACACTTTCCGTGGATCTGCTGGTATCCTTCGTTTTTGCATTTCAAATTGATTTCTGGAAATTAGAACAATTAAACTTAGGATTAATTTCGAATCAGTTACGGAATGTGCATTTAGTCCTTTTGCCATGTTTGACAGCAGTAATGTAGTAGGGAATTCGGCTCGAACAAACTTCCTTTGCATGACGCTAAAATCAAAGGATCAAATTTATCTTCATCTGGTTCTAAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>CTAGCCTTTGTCACCTTATAACACTTTCCGTGGATCTGCTGGTATCCTTCGTTTTTGCATTTCAAATTGATTTCTGGAAATTAGAACAATTAAACTTAGGATTAATTTCGAATCAGTTACGGAATGTGCATTTAGTCCTTTTGCCATGTTTGACAKCAGTAATGTAGTAGGGAATTCGGCTCGAACAAACTTCCTTTGCATGACGCTAAAATCAAAGGATCAAATTTATCTTCATCTGGTTCTAAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37306</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>71671</contig_pos>
        <strand></strand>
        <context>CAAAGGATCA[A/C]ATTTATCTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTCGGCTCGAACAAACTTCCTTTGCATGACGCTAAAATCAAAGGATCA</left_flank>
        <right_flank>ATTTATCTTCATCTGGTTCTAAAGTTTAGAATCTAAACTCACTTCATCGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAAAGAACTTGATGCTTCTGATTGGGATCATCCAGGAGGAGATCGCCCGATCTGGCATCATACTTGTATGCTCCCGCGTCCACATAGAATGCTTTATAGTTGCCAGGATTTTCAAAATAGTCTTTCAATTCTGGAACAGATACCCATGCATCATAGACGCCAGTGATATCCCATAAGTAGTTTTGTAGTCCGGAATAGTAGTAATTGGCCACTTGAGGTTTGAAATCTTTCACAAATTCATTATGACAGGCGGATTGAGCGTCTTGCCAAGTGAATCTAGCCTTTGTCACCTTATAACACTTTCCGTGGATCTGCTGGTATCCTTCGTTTTTGCATTTCAAATTGATTTCTGGAAATTAGAACAATTAAACTTAGGATTAATTTCGAATCAGTTACGGAATGTGCATTTAGTCCTTTTGCCATGTTTGACAGCAGTAATGTAGTAGGGAATTCGGCTCGAACAAACTTCCTTTGCATGACGCTAAAATCAAAGGATCAAATTTATCTTCATCTGGTTCTAAAGTTTAGAATCTAAACTCACTTCATCGTCAGATACAGTAGGAAGGTCTACAGTACACTTGTGTCCCTTATCCACGTCTCCAGGATCCACTAGATCGATAGATTCGCCACCCAAGAAAACGCATGTTTTCATAGAGCTGAGGTCGATGTCATTGACATACGTGTCTATAAAGTCAGACAACTTTGCTTGTTGAGTGACAGGAAGAAGAAGAGCGAAGAGGACAACGAATAGCTGCAAACGATGGGTTGCTGTAGCTATCTCGGATCCTCCAGAGTCCTTACCATTGTCTGCATTCTGAGTCGTTTATTTTCCGCTTTCAACGACACTTTTGTTGTACCGATATCGCTTGAGACTGAGCGCCAGTTGAGCGTTTTTGGCAAATTCGACATTGAGTGGAGTTTTCCAGAAACCTCCGGGGATTTATAGCATCGTTTCATCTTGATAAGAGATCAGGGTGGCAGATAAATGGGGTGCTGAGA</canonical>
            <polymorphic>ACAAAGAACTTGATGCTTCTGATTGGGATCATCCAGGAGGAGATCGCCCGATCTGGCATCATACTTGTATGCTCCCGCGTCCACATAGAATGCTTTATAGTTGCCAGGATTTTCAAAATAGTCTTTCAATTCTGGAACAGATACCCATGCATCATAGACGCCAGTGATATCCCATAAGTAGTTTTGTAGTCCGGAATAGTAGTAATTGGCCACTTGAGGTTTGAAATCTTTCACAAATTCATTATGACAGGCGGATTGAGCGTCTTGCCAAGTGAATCTAGCCTTTGTCACCTTATAACACTTTCCGTGGATCTGCTGGTATCCTTCGTTTTTGCATTTCAAATTGATTTCTGGAAATTAGAACAATTAAACTTAGGATTAATTTCGAATCAGTTACGGAATGTGCATTTAGTCCTTTTGCCATGTTTGACAGCAGTAATGTAGTAGGGAATTCGGCTCGAACAAACTTCCTTTGCATGACGCTAAAATCAAAGGATCAMATTTATCTTCATCTGGTTCTAAAGTTTAGAATCTAAACTCACTTCATCGTCAGATACAGTAGGAAGGTCTACAGTACACTTGTGTCCCTTATCCACGTCTCCAGGATCCACTAGATCGATAGATTCGCCACCCAAGAAAACGCATGTTTTCATAGAGCTGAGGTCGATGTCATTGACATACGTGTCTATAAAGTCAGACAACTTTGCTTGTTGAGTGACAGGAAGAAGAAGAGCGAAGAGGACAACGAATAGCTGCAAACGATGGGTTGCTGTAGCTATCTCGGATCCTCCAGAGTCCTTACCATTGTCTGCATTCTGAGTCGTTTATTTTCCGCTTTCAACGACACTTTTGTTGTACCGATATCGCTTGAGACTGAGCGCCAGTTGAGCGTTTTTGGCAAATTCGACATTGAGTGGAGTTTTCCAGAAACCTCCGGGGATTTATAGCATCGTTTCATCTTGATAAGAGATCAGGGTGGCAGATAAATGGGGTGCTGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>401 235 214 100 50</canonical_bands>
                <polymorphic_bands>451 235 214 100</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>401 127 106 100 76 69 50 32 16 14 9</canonical_bands>
                <polymorphic_bands>451 127 106 100 76 69 32 16 14 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATCCTTCGTTTTTGCATTT</pcr_primer_p1>
		<pcr_primer_p2>ACCTTCCTACTGTATCTGACGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTATCCTTCGTTTTTGCATTTCAAATTGATTTCTGGAAATTAGAACAATTAAACTTAGGATTAATTTCGAATCAGTTACGGAATGTGCATTTAGTCCTTTTGCCATGTTTGACAGCAGTAATGTAGTAGGGAATTCGGCTCGAACAAACTTCCTTTGCATGACGCTAAAATCAAAGGATCAAATTTATCTTCATCTGGTTCTAAAGTTTAGAATCTAAACTCACTTCATCGTCAGATACAGTAGGAAGGT</canonical_amplicon>
		<polymorphic_amplicon>GTATCCTTCGTTTTTGCATTTCAAATTGATTTCTGGAAATTAGAACAATTAAACTTAGGATTAATTTCGAATCAGTTACGGAATGTGCATTTAGTCCTTTTGCCATGTTTGACAGCAGTAATGTAGTAGGGAATTCGGCTCGAACAAACTTCCTTTGCATGACGCTAAAATCAAAGGATCAMATTTATCTTCATCTGGTTCTAAAGTTTAGAATCTAAACTCACTTCATCGTCAGATACAGTAGGAAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37307</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>71984</contig_pos>
        <strand></strand>
        <context>CATTGTCTGC[A/T]TTCTGAGTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGGGTTGCTGTAGCTATCTCGGATCCTCCAGAGTCCTTACCATTGTCTGC</left_flank>
        <right_flank>TTCTGAGTCGTTTATTTTCCGCTTTCAACGACACTTTTGTTGTACCGATA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCTGGTATCCTTCGTTTTTGCATTTCAAATTGATTTCTGGAAATTAGAACAATTAAACTTAGGATTAATTTCGAATCAGTTACGGAATGTGCATTTAGTCCTTTTGCCATGTTTGACAGCAGTAATGTAGTAGGGAATTCGGCTCGAACAAACTTCCTTTGCATGACGCTAAAATCAAAGGATCAAATTTATCTTCATCTGGTTCTAAAGTTTAGAATCTAAACTCACTTCATCGTCAGATACAGTAGGAAGGTCTACAGTACACTTGTGTCCCTTATCCACGTCTCCAGGATCCACTAGATCGATAGATTCGCCACCCAAGAAAACGCATGTTTTCATAGAGCTGAGGTCGATGTCATTGACATACGTGTCTATAAAGTCAGACAACTTTGCTTGTTGAGTGACAGGAAGAAGAAGAGCGAAGAGGACAACGAATAGCTGCAAACGATGGGTTGCTGTAGCTATCTCGGATCCTCCAGAGTCCTTACCATTGTCTGCATTCTGAGTCGTTTATTTTCCGCTTTCAACGACACTTTTGTTGTACCGATATCGCTTGAGACTGAGCGCCAGTTGAGCGTTTTTGGCAAATTCGACATTGAGTGGAGTTTTCCAGAAACCTCCGGGGATTTATAGCATCGTTTCATCTTGATAAGAGATCAGGGTGGCAGATAAATGGGGTGCTGAGACTGGAGCACAGTCGTGGCAATGAAAATTTTGTCATCTTTCTTGTCAAATCCACAATTTATTATTTTTAATTTTGTTAATTTGTTGAATTAGAAAAAAAATTTTCTGTAATAATAACGTTATAAATACCAACCCTTCTCGAACAATCAATTACTGTCACTGTGACTTAAATATCGCAAATGCTCCAATGGAACGCTCCTATACTACCGTATCTTTGAGCTAATGTATCTCACTTCCTGTGAAAGATATCAAAAATCTGTTAATGAATGAAATGTTAGTGATATCATGGTAAACAATTTACTAGTTGACAAATTT</canonical>
            <polymorphic>TGCTGGTATCCTTCGTTTTTGCATTTCAAATTGATTTCTGGAAATTAGAACAATTAAACTTAGGATTAATTTCGAATCAGTTACGGAATGTGCATTTAGTCCTTTTGCCATGTTTGACAGCAGTAATGTAGTAGGGAATTCGGCTCGAACAAACTTCCTTTGCATGACGCTAAAATCAAAGGATCAAATTTATCTTCATCTGGTTCTAAAGTTTAGAATCTAAACTCACTTCATCGTCAGATACAGTAGGAAGGTCTACAGTACACTTGTGTCCCTTATCCACGTCTCCAGGATCCACTAGATCGATAGATTCGCCACCCAAGAAAACGCATGTTTTCATAGAGCTGAGGTCGATGTCATTGACATACGTGTCTATAAAGTCAGACAACTTTGCTTGTTGAGTGACAGGAAGAAGAAGAGCGAAGAGGACAACGAATAGCTGCAAACGATGGGTTGCTGTAGCTATCTCGGATCCTCCAGAGTCCTTACCATTGTCTGCWTTCTGAGTCGTTTATTTTCCGCTTTCAACGACACTTTTGTTGTACCGATATCGCTTGAGACTGAGCGCCAGTTGAGCGTTTTTGGCAAATTCGACATTGAGTGGAGTTTTCCAGAAACCTCCGGGGATTTATAGCATCGTTTCATCTTGATAAGAGATCAGGGTGGCAGATAAATGGGGTGCTGAGACTGGAGCACAGTCGTGGCAATGAAAATTTTGTCATCTTTCTTGTCAAATCCACAATTTATTATTTTTAATTTTGTTAATTTGTTGAATTAGAAAAAAAATTTTCTGTAATAATAACGTTATAAATACCAACCCTTCTCGAACAATCAATTACTGTCACTGTGACTTAAATATCGCAAATGCTCCAATGGAACGCTCCTATACTACCGTATCTTTGAGCTAATGTATCTCACTTCCTGTGAAAGATATCAAAAATCTGTTAATGAATGAAATGTTAGTGATATCATGGTAAACAATTTACTAGTTGACAAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>502 280 71 70 56 21</canonical_bands>
                <polymorphic_bands>558 280 71 70 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTGACAGGAAGAAGAAGAGC</pcr_primer_p1>
		<pcr_primer_p2>CAAGATGAAACGATGCTATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGTGACAGGAAGAAGAAGAGCGAAGAGGACAACGAATAGCTGCAAACGATGGGTTGCTGTAGCTATCTCGGATCCTCCAGAGTCCTTACCATTGTCTGCATTCTGAGTCGTTTATTTTCCGCTTTCAACGACACTTTTGTTGTACCGATATCGCTTGAGACTGAGCGCCAGTTGAGCGTTTTTGGCAAATTCGACATTGAGTGGAGTTTTCCAGAAACCTCCGGGGATTTATAGCATCGTTTCATCTTG</canonical_amplicon>
		<polymorphic_amplicon>AGTGACAGGAAGAAGAAGAGCGAAGAGGACAACGAATAGCTGCAAACGATGGGTTGCTGTAGCTATCTCGGATCCTCCAGAGTCCTTACCATTGTCTGCWTTCTGAGTCGTTTATTTTCCGCTTTCAACGACACTTTTGTTGTACCGATATCGCTTGAGACTGAGCGCCAGTTGAGCGTTTTTGGCAAATTCGACATTGAGTGGAGTTTTCCAGAAACCTCCGGGGATTTATAGCATCGTTTCATCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37308</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>96209</contig_pos>
        <strand></strand>
        <context>aattgttcat[A/C]ataatatyat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCAT</left_flank>
        <right_flank>ATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCTAACCTTTAACGGAAAATTTCTAATTTTAATAACTTTCTATTTTCATATTTTCTGAAATAATGCAAAGTTTTCTCAAAACTGTTCATATAAACTCCCTCATTTCGATATCGCTGTTTGATTGTTGTCCTAAAAATAAAAATAGTACTACTGATTGCGTTGCACCCTGGTTGCCAACTTTGAGCCGATTTTTCTCAGTTACTGTGGAAGATATCAAAATGTTGTTGACTGATAAACTATAGGTGATATTATGATAAATATCTTATTAGTTGACCACTTTGTTATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGCGCGCCTGCTGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTTCAATTTTTTTAATTTCAGATCACTAGGAGCCGAAAATAATGCTTATTGAGGGTGTGGAAGTAGACTTGCTCAAATGGTTTATCATATTTTTCATCGTTTCCAGTGTGAGTGTTTCAAAAGCTTCTGACTAGTAAAGTTTTTTCTCCGATTCCGAAACACAACAAAAAATTCTACAACTGATTTCGAAATCAGATCTCTATTTTCAAATCTTGTCATAAATTAT</canonical>
            <polymorphic>GCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCTAACCTTTAACGGAAAATTTCTAATTTTAATAACTTTCTATTTTCATATTTTCTGAAATAATGCAAAGTTTTCTCAAAACTGTTCATATAAACTCCCTCATTTCGATATCGCTGTTTGATTGTTGTCCTAAAAATAAAAATAGTACTACTGATTGCGTTGCACCCTGGTTGCCAACTTTGAGCCGATTTTTCTCAGTTACTGTGGAAGATATCAAAATGTTGTTGACTGATAAACTATAGGTGATATTATGATAAATATCTTATTAGTTGACCACTTTGTTATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGCGCGCCTGCTGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATMATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTTCAATTTTTTTAATTTCAGATCACTAGGAGCCGAAAATAATGCTTATTGAGGGTGTGGAAGTAGACTTGCTCAAATGGTTTATCATATTTTTCATCGTTTCCAGTGTGAGTGTTTCAAAAGCTTCTGACTAGTAAAGTTTTTTCTCCGATTCCGAAACACAACAAAAAATTCTACAACTGATTTCGAAATCAGATCTCTATTTTCAAATCTTGTCATAAATTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATTGTTGTCCTAAAAATAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAGCTTAAAGGTCTGAGAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>590</pcr_amplicon_size>
		<canonical_amplicon>TGATTGTTGTCCTAAAAATAAAAATAGTACTACTGATTGCGTTGCACCCTGGTTGCCAACTTTGAGCCGATTTTTCTCAGTTACTGTGGAAGATATCAAAATGTTGTTGACTGATAAACTATAGGTGATATTATGATAAATATCTTATTAGTTGACCACTTTGTTATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGCGCGCCTGCTGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTT</canonical_amplicon>
		<polymorphic_amplicon>TGATTGTTGTCCTAAAAATAAAAATAGTACTACTGATTGCGTTGCACCCTGGTTGCCAACTTTGAGCCGATTTTTCTCAGTTACTGTGGAAGATATCAAAATGTTGTTGACTGATAAACTATAGGTGATATTATGATAAATATCTTATTAGTTGACCACTTTGTTATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGCGCGCCTGCTGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATMATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37309</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>96217</contig_pos>
        <strand></strand>
        <context>atmataatat[C/T]ataaacattt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATAT</left_flank>
        <right_flank>ATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACTGAGCCACGCGGGCAAAGAGAAAGCGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCTAACCTTTAACGGAAAATTTCTAATTTTAATAACTTTCTATTTTCATATTTTCTGAAATAATGCAAAGTTTTCTCAAAACTGTTCATATAAACTCCCTCATTTCGATATCGCTGTTTGATTGTTGTCCTAAAAATAAAAATAGTACTACTGATTGCGTTGCACCCTGGTTGCCAACTTTGAGCCGATTTTTCTCAGTTACTGTGGAAGATATCAAAATGTTGTTGACTGATAAACTATAGGTGATATTATGATAAATATCTTATTAGTTGACCACTTTGTTATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGCGCGCCTGCTGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTTCAATTTTTTTAATTTCAGATCACTAGGAGCCGAAAATAATGCTTATTGAGGGTGTGGAAGTAGACTTGCTCAAATGGTTTATCATATTTTTCATCGTTTCCAGTGTGAGTGTTTCAAAAGCTTCTGACTAGTAAAGTTTTTTCTCCGATTCCGAAACACAACAAAAAATTCTACAACTGATTTCGAAATCAGATCTCTATTTTCAAATCTTGTCATAAATTATGTACACTA</canonical>
            <polymorphic>CGACTGAGCCACGCGGGCAAAGAGAAAGCGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCTAACCTTTAACGGAAAATTTCTAATTTTAATAACTTTCTATTTTCATATTTTCTGAAATAATGCAAAGTTTTCTCAAAACTGTTCATATAAACTCCCTCATTTCGATATCGCTGTTTGATTGTTGTCCTAAAAATAAAAATAGTACTACTGATTGCGTTGCACCCTGGTTGCCAACTTTGAGCCGATTTTTCTCAGTTACTGTGGAAGATATCAAAATGTTGTTGACTGATAAACTATAGGTGATATTATGATAAATATCTTATTAGTTGACCACTTTGTTATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGCGCGCCTGCTGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATYATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTTCAATTTTTTTAATTTCAGATCACTAGGAGCCGAAAATAATGCTTATTGAGGGTGTGGAAGTAGACTTGCTCAAATGGTTTATCATATTTTTCATCGTTTCCAGTGTGAGTGTTTCAAAAGCTTCTGACTAGTAAAGTTTTTTCTCCGATTCCGAAACACAACAAAAAATTCTACAACTGATTTCGAAATCAGATCTCTATTTTCAAATCTTGTCATAAATTATGTACACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATTGTTGTCCTAAAAATAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAGCTTAAAGGTCTGAGAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>590</pcr_amplicon_size>
		<canonical_amplicon>TGATTGTTGTCCTAAAAATAAAAATAGTACTACTGATTGCGTTGCACCCTGGTTGCCAACTTTGAGCCGATTTTTCTCAGTTACTGTGGAAGATATCAAAATGTTGTTGACTGATAAACTATAGGTGATATTATGATAAATATCTTATTAGTTGACCACTTTGTTATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGCGCGCCTGCTGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTT</canonical_amplicon>
		<polymorphic_amplicon>TGATTGTTGTCCTAAAAATAAAAATAGTACTACTGATTGCGTTGCACCCTGGTTGCCAACTTTGAGCCGATTTTTCTCAGTTACTGTGGAAGATATCAAAATGTTGTTGACTGATAAACTATAGGTGATATTATGATAAATATCTTATTAGTTGACCACTTTGTTATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGCGCGCCTGCTGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATYATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37310</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>96228</contig_pos>
        <strand></strand>
        <context>ataaacattt[T/C]atcagttgac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATCATAAACATTT</left_flank>
        <right_flank>ATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCT</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCGGGCAAAGAGAAAGCGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCTAACCTTTAACGGAAAATTTCTAATTTTAATAACTTTCTATTTTCATATTTTCTGAAATAATGCAAAGTTTTCTCAAAACTGTTCATATAAACTCCCTCATTTCGATATCGCTGTTTGATTGTTGTCCTAAAAATAAAAATAGTACTACTGATTGCGTTGCACCCTGGTTGCCAACTTTGAGCCGATTTTTCTCAGTTACTGTGGAAGATATCAAAATGTTGTTGACTGATAAACTATAGGTGATATTATGATAAATATCTTATTAGTTGACCACTTTGTTATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGCGCGCCTGCTGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTTCAATTTTTTTAATTTCAGATCACTAGGAGCCGAAAATAATGCTTATTGAGGGTGTGGAAGTAGACTTGCTCAAATGGTTTATCATATTTTTCATCGTTTCCAGTGTGAGTGTTTCAAAAGCTTCTGACTAGTAAAGTTTTTTCTCCGATTCCGAAACACAACAAAAAATTCTACAACTGATTTCGAAATCAGATCTCTATTTTCAAATCTTGTCATAAATTATGTACACTAATACATTTGTG</canonical>
            <polymorphic>CGCGGGCAAAGAGAAAGCGCTACAAAAAAACTACGAAAAATCTCCTGTCCCCTAACCTTTAACGGAAAATTTCTAATTTTAATAACTTTCTATTTTCATATTTTCTGAAATAATGCAAAGTTTTCTCAAAACTGTTCATATAAACTCCCTCATTTCGATATCGCTGTTTGATTGTTGTCCTAAAAATAAAAATAGTACTACTGATTGCGTTGCACCCTGGTTGCCAACTTTGAGCCGATTTTTCTCAGTTACTGTGGAAGATATCAAAATGTTGTTGACTGATAAACTATAGGTGATATTATGATAAATATCTTATTAGTTGACCACTTTGTTATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGCGCGCCTGCTGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATCATAAACATTTYATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTTCAATTTTTTTAATTTCAGATCACTAGGAGCCGAAAATAATGCTTATTGAGGGTGTGGAAGTAGACTTGCTCAAATGGTTTATCATATTTTTCATCGTTTCCAGTGTGAGTGTTTCAAAAGCTTCTGACTAGTAAAGTTTTTTCTCCGATTCCGAAACACAACAAAAAATTCTACAACTGATTTCGAAATCAGATCTCTATTTTCAAATCTTGTCATAAATTATGTACACTAATACATTTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATTGTTGTCCTAAAAATAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAGCTTAAAGGTCTGAGAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>590</pcr_amplicon_size>
		<canonical_amplicon>TGATTGTTGTCCTAAAAATAAAAATAGTACTACTGATTGCGTTGCACCCTGGTTGCCAACTTTGAGCCGATTTTTCTCAGTTACTGTGGAAGATATCAAAATGTTGTTGACTGATAAACTATAGGTGATATTATGATAAATATCTTATTAGTTGACCACTTTGTTATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGCGCGCCTGCTGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTT</canonical_amplicon>
		<polymorphic_amplicon>TGATTGTTGTCCTAAAAATAAAAATAGTACTACTGATTGCGTTGCACCCTGGTTGCCAACTTTGAGCCGATTTTTCTCAGTTACTGTGGAAGATATCAAAATGTTGTTGACTGATAAACTATAGGTGATATTATGATAAATATCTTATTAGTTGACCACTTTGTTATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGCGCGCCTGCTGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATCATAAACATTTYATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37311</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>96275</contig_pos>
        <strand></strand>
        <context>aaaataatta[T/A]gcttgaaTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTA</left_flank>
        <right_flank>GCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCCCTAACCTTTAACGGAAAATTTCTAATTTTAATAACTTTCTATTTTCATATTTTCTGAAATAATGCAAAGTTTTCTCAAAACTGTTCATATAAACTCCCTCATTTCGATATCGCTGTTTGATTGTTGTCCTAAAAATAAAAATAGTACTACTGATTGCGTTGCACCCTGGTTGCCAACTTTGAGCCGATTTTTCTCAGTTACTGTGGAAGATATCAAAATGTTGTTGACTGATAAACTATAGGTGATATTATGATAAATATCTTATTAGTTGACCACTTTGTTATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGCGCGCCTGCTGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTTCAATTTTTTTAATTTCAGATCACTAGGAGCCGAAAATAATGCTTATTGAGGGTGTGGAAGTAGACTTGCTCAAATGGTTTATCATATTTTTCATCGTTTCCAGTGTGAGTGTTTCAAAAGCTTCTGACTAGTAAAGTTTTTTCTCCGATTCCGAAACACAACAAAAAATTCTACAACTGATTTCGAAATCAGATCTCTATTTTCAAATCTTGTCATAAATTATGTACACTAATACATTTGTGTTAACATACGTCGACCAGCTTACAGTAATCCTGCATAACATCATCCA</canonical>
            <polymorphic>TCCCCTAACCTTTAACGGAAAATTTCTAATTTTAATAACTTTCTATTTTCATATTTTCTGAAATAATGCAAAGTTTTCTCAAAACTGTTCATATAAACTCCCTCATTTCGATATCGCTGTTTGATTGTTGTCCTAAAAATAAAAATAGTACTACTGATTGCGTTGCACCCTGGTTGCCAACTTTGAGCCGATTTTTCTCAGTTACTGTGGAAGATATCAAAATGTTGTTGACTGATAAACTATAGGTGATATTATGATAAATATCTTATTAGTTGACCACTTTGTTATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGCGCGCCTGCTGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTAWGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTTCAATTTTTTTAATTTCAGATCACTAGGAGCCGAAAATAATGCTTATTGAGGGTGTGGAAGTAGACTTGCTCAAATGGTTTATCATATTTTTCATCGTTTCCAGTGTGAGTGTTTCAAAAGCTTCTGACTAGTAAAGTTTTTTCTCCGATTCCGAAACACAACAAAAAATTCTACAACTGATTTCGAAATCAGATCTCTATTTTCAAATCTTGTCATAAATTATGTACACTAATACATTTGTGTTAACATACGTCGACCAGCTTACAGTAATCCTGCATAACATCATCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATTGTTGTCCTAAAAATAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAGCTTAAAGGTCTGAGAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>590</pcr_amplicon_size>
		<canonical_amplicon>TGATTGTTGTCCTAAAAATAAAAATAGTACTACTGATTGCGTTGCACCCTGGTTGCCAACTTTGAGCCGATTTTTCTCAGTTACTGTGGAAGATATCAAAATGTTGTTGACTGATAAACTATAGGTGATATTATGATAAATATCTTATTAGTTGACCACTTTGTTATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGCGCGCCTGCTGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTT</canonical_amplicon>
		<polymorphic_amplicon>TGATTGTTGTCCTAAAAATAAAAATAGTACTACTGATTGCGTTGCACCCTGGTTGCCAACTTTGAGCCGATTTTTCTCAGTTACTGTGGAAGATATCAAAATGTTGTTGACTGATAAACTATAGGTGATATTATGATAAATATCTTATTAGTTGACCACTTTGTTATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGCGCGCCTGCTGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTAWGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37312</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>96327</contig_pos>
        <strand></strand>
        <context>ACGGCGCCtc[A/C]ccttggaatc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTC</left_flank>
        <right_flank>CCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGAC</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTCTGAAATAATGCAAAGTTTTCTCAAAACTGTTCATATAAACTCCCTCATTTCGATATCGCTGTTTGATTGTTGTCCTAAAAATAAAAATAGTACTACTGATTGCGTTGCACCCTGGTTGCCAACTTTGAGCCGATTTTTCTCAGTTACTGTGGAAGATATCAAAATGTTGTTGACTGATAAACTATAGGTGATATTATGATAAATATCTTATTAGTTGACCACTTTGTTATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGCGCGCCTGCTGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTTCAATTTTTTTAATTTCAGATCACTAGGAGCCGAAAATAATGCTTATTGAGGGTGTGGAAGTAGACTTGCTCAAATGGTTTATCATATTTTTCATCGTTTCCAGTGTGAGTGTTTCAAAAGCTTCTGACTAGTAAAGTTTTTTCTCCGATTCCGAAACACAACAAAAAATTCTACAACTGATTTCGAAATCAGATCTCTATTTTCAAATCTTGTCATAAATTATGTACACTAATACATTTGTGTTAACATACGTCGACCAGCTTACAGTAATCCTGCATAACATCATCCAAAAAAATGTCAGCAATGTTTTTCAAATCCCAAAACGTACGGGGGGATAATCA</canonical>
            <polymorphic>ATTTTCTGAAATAATGCAAAGTTTTCTCAAAACTGTTCATATAAACTCCCTCATTTCGATATCGCTGTTTGATTGTTGTCCTAAAAATAAAAATAGTACTACTGATTGCGTTGCACCCTGGTTGCCAACTTTGAGCCGATTTTTCTCAGTTACTGTGGAAGATATCAAAATGTTGTTGACTGATAAACTATAGGTGATATTATGATAAATATCTTATTAGTTGACCACTTTGTTATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGCGCGCCTGCTGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCMCCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTTCAATTTTTTTAATTTCAGATCACTAGGAGCCGAAAATAATGCTTATTGAGGGTGTGGAAGTAGACTTGCTCAAATGGTTTATCATATTTTTCATCGTTTCCAGTGTGAGTGTTTCAAAAGCTTCTGACTAGTAAAGTTTTTTCTCCGATTCCGAAACACAACAAAAAATTCTACAACTGATTTCGAAATCAGATCTCTATTTTCAAATCTTGTCATAAATTATGTACACTAATACATTTGTGTTAACATACGTCGACCAGCTTACAGTAATCCTGCATAACATCATCCAAAAAAATGTCAGCAATGTTTTTCAAATCCCAAAACGTACGGGGGGATAATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>115 99 89 70 69 63 56 49 48 47 42 41 39 32 31 29 25 17 14 14 4 3 2 2</canonical_bands>
                <polymorphic_bands>115 99 89 70 69 63 56 55 49 48 47 42 39 32 31 29 25 17 14 4 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATTGTTGTCCTAAAAATAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAGCTTAAAGGTCTGAGAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>590</pcr_amplicon_size>
		<canonical_amplicon>TGATTGTTGTCCTAAAAATAAAAATAGTACTACTGATTGCGTTGCACCCTGGTTGCCAACTTTGAGCCGATTTTTCTCAGTTACTGTGGAAGATATCAAAATGTTGTTGACTGATAAACTATAGGTGATATTATGATAAATATCTTATTAGTTGACCACTTTGTTATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGCGCGCCTGCTGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTT</canonical_amplicon>
		<polymorphic_amplicon>TGATTGTTGTCCTAAAAATAAAAATAGTACTACTGATTGCGTTGCACCCTGGTTGCCAACTTTGAGCCGATTTTTCTCAGTTACTGTGGAAGATATCAAAATGTTGTTGACTGATAAACTATAGGTGATATTATGATAAATATCTTATTAGTTGACCACTTTGTTATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGCGCGCCTGCTGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCMCCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37313</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>96372</contig_pos>
        <strand></strand>
        <context>aaatgtgcca[C/A]ttgacaaaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCA</left_flank>
        <right_flank>TTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCCTCATTTCGATATCGCTGTTTGATTGTTGTCCTAAAAATAAAAATAGTACTACTGATTGCGTTGCACCCTGGTTGCCAACTTTGAGCCGATTTTTCTCAGTTACTGTGGAAGATATCAAAATGTTGTTGACTGATAAACTATAGGTGATATTATGATAAATATCTTATTAGTTGACCACTTTGTTATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGCGCGCCTGCTGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTTCAATTTTTTTAATTTCAGATCACTAGGAGCCGAAAATAATGCTTATTGAGGGTGTGGAAGTAGACTTGCTCAAATGGTTTATCATATTTTTCATCGTTTCCAGTGTGAGTGTTTCAAAAGCTTCTGACTAGTAAAGTTTTTTCTCCGATTCCGAAACACAACAAAAAATTCTACAACTGATTTCGAAATCAGATCTCTATTTTCAAATCTTGTCATAAATTATGTACACTAATACATTTGTGTTAACATACGTCGACCAGCTTACAGTAATCCTGCATAACATCATCCAAAAAAATGTCAGCAATGTTTTTCAAATCCCAAAACGTACGGGGGGATAATCACTTGTAGTTTCAAGGATGATCCTATGTTTTATGGACATCAAATTG</canonical>
            <polymorphic>CTCCCTCATTTCGATATCGCTGTTTGATTGTTGTCCTAAAAATAAAAATAGTACTACTGATTGCGTTGCACCCTGGTTGCCAACTTTGAGCCGATTTTTCTCAGTTACTGTGGAAGATATCAAAATGTTGTTGACTGATAAACTATAGGTGATATTATGATAAATATCTTATTAGTTGACCACTTTGTTATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGCGCGCCTGCTGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCAMTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTTCAATTTTTTTAATTTCAGATCACTAGGAGCCGAAAATAATGCTTATTGAGGGTGTGGAAGTAGACTTGCTCAAATGGTTTATCATATTTTTCATCGTTTCCAGTGTGAGTGTTTCAAAAGCTTCTGACTAGTAAAGTTTTTTCTCCGATTCCGAAACACAACAAAAAATTCTACAACTGATTTCGAAATCAGATCTCTATTTTCAAATCTTGTCATAAATTATGTACACTAATACATTTGTGTTAACATACGTCGACCAGCTTACAGTAATCCTGCATAACATCATCCAAAAAAATGTCAGCAATGTTTTTCAAATCCCAAAACGTACGGGGGGATAATCACTTGTAGTTTCAAGGATGATCCTATGTTTTATGGACATCAAATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>99 89 70 70 69 63 56 49 48 47 45 42 41 39 32 31 29 25 17 14 14 4 3 2 2</canonical_bands>
                <polymorphic_bands>99 89 70 70 69 63 56 51 49 47 45 42 41 39 32 31 29 25 17 14 14 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATTGTTGTCCTAAAAATAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAGCTTAAAGGTCTGAGAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>590</pcr_amplicon_size>
		<canonical_amplicon>TGATTGTTGTCCTAAAAATAAAAATAGTACTACTGATTGCGTTGCACCCTGGTTGCCAACTTTGAGCCGATTTTTCTCAGTTACTGTGGAAGATATCAAAATGTTGTTGACTGATAAACTATAGGTGATATTATGATAAATATCTTATTAGTTGACCACTTTGTTATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGCGCGCCTGCTGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTT</canonical_amplicon>
		<polymorphic_amplicon>TGATTGTTGTCCTAAAAATAAAAATAGTACTACTGATTGCGTTGCACCCTGGTTGCCAACTTTGAGCCGATTTTTCTCAGTTACTGTGGAAGATATCAAAATGTTGTTGACTGATAAACTATAGGTGATATTATGATAAATATCTTATTAGTTGACCACTTTGTTATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGCGCGCCTGCTGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCAMTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37314</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>96383</contig_pos>
        <strand></strand>
        <context>ttgacaaaat[T/G]tttatcataa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAAT</left_flank>
        <right_flank>TTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATATCGCTGTTTGATTGTTGTCCTAAAAATAAAAATAGTACTACTGATTGCGTTGCACCCTGGTTGCCAACTTTGAGCCGATTTTTCTCAGTTACTGTGGAAGATATCAAAATGTTGTTGACTGATAAACTATAGGTGATATTATGATAAATATCTTATTAGTTGACCACTTTGTTATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGCGCGCCTGCTGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTTCAATTTTTTTAATTTCAGATCACTAGGAGCCGAAAATAATGCTTATTGAGGGTGTGGAAGTAGACTTGCTCAAATGGTTTATCATATTTTTCATCGTTTCCAGTGTGAGTGTTTCAAAAGCTTCTGACTAGTAAAGTTTTTTCTCCGATTCCGAAACACAACAAAAAATTCTACAACTGATTTCGAAATCAGATCTCTATTTTCAAATCTTGTCATAAATTATGTACACTAATACATTTGTGTTAACATACGTCGACCAGCTTACAGTAATCCTGCATAACATCATCCAAAAAAATGTCAGCAATGTTTTTCAAATCCCAAAACGTACGGGGGGATAATCACTTGTAGTTTCAAGGATGATCCTATGTTTTATGGACATCAAATTGTGCGTACATCT</canonical>
            <polymorphic>CGATATCGCTGTTTGATTGTTGTCCTAAAAATAAAAATAGTACTACTGATTGCGTTGCACCCTGGTTGCCAACTTTGAGCCGATTTTTCTCAGTTACTGTGGAAGATATCAAAATGTTGTTGACTGATAAACTATAGGTGATATTATGATAAATATCTTATTAGTTGACCACTTTGTTATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGCGCGCCTGCTGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATKTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTTCAATTTTTTTAATTTCAGATCACTAGGAGCCGAAAATAATGCTTATTGAGGGTGTGGAAGTAGACTTGCTCAAATGGTTTATCATATTTTTCATCGTTTCCAGTGTGAGTGTTTCAAAAGCTTCTGACTAGTAAAGTTTTTTCTCCGATTCCGAAACACAACAAAAAATTCTACAACTGATTTCGAAATCAGATCTCTATTTTCAAATCTTGTCATAAATTATGTACACTAATACATTTGTGTTAACATACGTCGACCAGCTTACAGTAATCCTGCATAACATCATCCAAAAAAATGTCAGCAATGTTTTTCAAATCCCAAAACGTACGGGGGGATAATCACTTGTAGTTTCAAGGATGATCCTATGTTTTATGGACATCAAATTGTGCGTACATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>496 273 231</canonical_bands>
                <polymorphic_bands>769 231</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>201 164 156 110 108 71 67 51 47 16 9</canonical_bands>
                <polymorphic_bands>218 201 164 156 71 67 51 47 16 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATTGTTGTCCTAAAAATAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAGCTTAAAGGTCTGAGAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>590</pcr_amplicon_size>
		<canonical_amplicon>TGATTGTTGTCCTAAAAATAAAAATAGTACTACTGATTGCGTTGCACCCTGGTTGCCAACTTTGAGCCGATTTTTCTCAGTTACTGTGGAAGATATCAAAATGTTGTTGACTGATAAACTATAGGTGATATTATGATAAATATCTTATTAGTTGACCACTTTGTTATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGCGCGCCTGCTGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTT</canonical_amplicon>
		<polymorphic_amplicon>TGATTGTTGTCCTAAAAATAAAAATAGTACTACTGATTGCGTTGCACCCTGGTTGCCAACTTTGAGCCGATTTTTCTCAGTTACTGTGGAAGATATCAAAATGTTGTTGACTGATAAACTATAGGTGATATTATGATAAATATCTTATTAGTTGACCACTTTGTTATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGCGCGCCTGCTGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATKTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37315</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>96433</contig_pos>
        <strand></strand>
        <context>tttgatatct[T/G]cgayaggaac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCT</left_flank>
        <right_flank>CGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCGTTGCACCCTGGTTGCCAACTTTGAGCCGATTTTTCTCAGTTACTGTGGAAGATATCAAAATGTTGTTGACTGATAAACTATAGGTGATATTATGATAAATATCTTATTAGTTGACCACTTTGTTATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGCGCGCCTGCTGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTTCAATTTTTTTAATTTCAGATCACTAGGAGCCGAAAATAATGCTTATTGAGGGTGTGGAAGTAGACTTGCTCAAATGGTTTATCATATTTTTCATCGTTTCCAGTGTGAGTGTTTCAAAAGCTTCTGACTAGTAAAGTTTTTTCTCCGATTCCGAAACACAACAAAAAATTCTACAACTGATTTCGAAATCAGATCTCTATTTTCAAATCTTGTCATAAATTATGTACACTAATACATTTGTGTTAACATACGTCGACCAGCTTACAGTAATCCTGCATAACATCATCCAAAAAAATGTCAGCAATGTTTTTCAAATCCCAAAACGTACGGGGGGATAATCACTTGTAGTTTCAAGGATGATCCTATGTTTTATGGACATCAAATTGTGCGTACATCTTTTAGTTTATTCGTTCAGAGATAAAACGTAGAGAGGTACAGTCGTCCAAA</canonical>
            <polymorphic>TGCGTTGCACCCTGGTTGCCAACTTTGAGCCGATTTTTCTCAGTTACTGTGGAAGATATCAAAATGTTGTTGACTGATAAACTATAGGTGATATTATGATAAATATCTTATTAGTTGACCACTTTGTTATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGCGCGCCTGCTGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTKCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTTCAATTTTTTTAATTTCAGATCACTAGGAGCCGAAAATAATGCTTATTGAGGGTGTGGAAGTAGACTTGCTCAAATGGTTTATCATATTTTTCATCGTTTCCAGTGTGAGTGTTTCAAAAGCTTCTGACTAGTAAAGTTTTTTCTCCGATTCCGAAACACAACAAAAAATTCTACAACTGATTTCGAAATCAGATCTCTATTTTCAAATCTTGTCATAAATTATGTACACTAATACATTTGTGTTAACATACGTCGACCAGCTTACAGTAATCCTGCATAACATCATCCAAAAAAATGTCAGCAATGTTTTTCAAATCCCAAAACGTACGGGGGGATAATCACTTGTAGTTTCAAGGATGATCCTATGTTTTATGGACATCAAATTGTGCGTACATCTTTTAGTTTATTCGTTCAGAGATAAAACGTAGAGAGGTACAGTCGTCCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>254 247 236 193 70</canonical_bands>
                <polymorphic_bands>490 247 193 70</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATTGTTGTCCTAAAAATAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAGCTTAAAGGTCTGAGAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>590</pcr_amplicon_size>
		<canonical_amplicon>TTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTT</canonical_amplicon>
		<polymorphic_amplicon>TKCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37316</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>96437</contig_pos>
        <strand></strand>
        <context>atatctkcga[T/C]aggaaccgag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGA</left_flank>
        <right_flank>AGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCACCCTGGTTGCCAACTTTGAGCCGATTTTTCTCAGTTACTGTGGAAGATATCAAAATGTTGTTGACTGATAAACTATAGGTGATATTATGATAAATATCTTATTAGTTGACCACTTTGTTATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGCGCGCCTGCTGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTTCAATTTTTTTAATTTCAGATCACTAGGAGCCGAAAATAATGCTTATTGAGGGTGTGGAAGTAGACTTGCTCAAATGGTTTATCATATTTTTCATCGTTTCCAGTGTGAGTGTTTCAAAAGCTTCTGACTAGTAAAGTTTTTTCTCCGATTCCGAAACACAACAAAAAATTCTACAACTGATTTCGAAATCAGATCTCTATTTTCAAATCTTGTCATAAATTATGTACACTAATACATTTGTGTTAACATACGTCGACCAGCTTACAGTAATCCTGCATAACATCATCCAAAAAAATGTCAGCAATGTTTTTCAAATCCCAAAACGTACGGGGGGATAATCACTTGTAGTTTCAAGGATGATCCTATGTTTTATGGACATCAAATTGTGCGTACATCTTTTAGTTTATTCGTTCAGAGATAAAACGTAGAGAGGTACAGTCGTCCAAAAAAT</canonical>
            <polymorphic>TTGCACCCTGGTTGCCAACTTTGAGCCGATTTTTCTCAGTTACTGTGGAAGATATCAAAATGTTGTTGACTGATAAACTATAGGTGATATTATGATAAATATCTTATTAGTTGACCACTTTGTTATATCTTTTACAGTAACCGAGATAATTGAGCTCAAAGCGCGCCTGCTGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGAYAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTTCAATTTTTTTAATTTCAGATCACTAGGAGCCGAAAATAATGCTTATTGAGGGTGTGGAAGTAGACTTGCTCAAATGGTTTATCATATTTTTCATCGTTTCCAGTGTGAGTGTTTCAAAAGCTTCTGACTAGTAAAGTTTTTTCTCCGATTCCGAAACACAACAAAAAATTCTACAACTGATTTCGAAATCAGATCTCTATTTTCAAATCTTGTCATAAATTATGTACACTAATACATTTGTGTTAACATACGTCGACCAGCTTACAGTAATCCTGCATAACATCATCCAAAAAAATGTCAGCAATGTTTTTCAAATCCCAAAACGTACGGGGGGATAATCACTTGTAGTTTCAAGGATGATCCTATGTTTTATGGACATCAAATTGTGCGTACATCTTTTAGTTTATTCGTTCAGAGATAAAACGTAGAGAGGTACAGTCGTCCAAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATTGTTGTCCTAAAAATAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAATTGAAGCTTAAAGGTCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>596</pcr_amplicon_size>
		<canonical_amplicon>ATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTTCAATTT</canonical_amplicon>
		<polymorphic_amplicon>AYAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTTCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37317</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>96607</contig_pos>
        <strand>+</strand>
        <context>GTTTCAAAAG[C/T]TTCTGACTAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAATGGTTTATCATATTTTTCATCGTTTCCAGTGTGAGTGTTTCAAAAG</left_flank>
        <right_flank>TTCTGACTAGTAAAGTTTTTTCTCCGATTCCGAAACACAACAAAAAATTC</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTTCAATTTTTTTAATTTCAGATCACTAGGAGCCGAAAATAATGCTTATTGAGGGTGTGGAAGTAGACTTGCTCAAATGGTTTATCATATTTTTCATCGTTTCCAGTGTGAGTGTTTCAAAAGCTTCTGACTAGTAAAGTTTTTTCTCCGATTCCGAAACACAACAAAAAATTCTACAACTGATTTCGAAATCAGATCTCTATTTTCAAATCTTGTCATAAATTATGTACACTAATACATTTGTGTTAACATACGTCGACCAGCTTACAGTAATCCTGCATAACATCATCCAAAAAAATGTCAGCAATGTTTTTCAAATCCCAAAACGTACGGGGGGATAATCACTTGTAGTTTCAAGGATGATCCTATGTTTTATGGACATCAAATTGTGCGTACATCTTTTAGTTTATTCGTTCAGAGATAAAACGTAGAGAGGTACAGTCGTCCAAAAAATTGGGCACCATCAACCAAACGTTTCTTCAGAACTTCATTGTTGAAGTTGTCAAGTTTGAGCTCAATTATCTCGGTTCTTTCAAATGATATCAAAAAGTGACTAACTGACAAAATAGTTTTGATATTATGATGAACATTGTAACAGTTGCTCACTTTTTGACACCTTTCGAA</canonical>
            <polymorphic>TGCAACCGCACATCTCAGACGGAAGCGGAGCGACACCTTGAATCAATTTATCTCCGTTCCTGTGTAAGATATCGAAAAGTTGTCAACTAAAAATTGTTCATAATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTTCAATTTTTTTAATTTCAGATCACTAGGAGCCGAAAATAATGCTTATTGAGGGTGTGGAAGTAGACTTGCTCAAATGGTTTATCATATTTTTCATCGTTTCCAGTGTGAGTGTTTCAAAAGYTTCTGACTAGTAAAGTTTTTTCTCCGATTCCGAAACACAACAAAAAATTCTACAACTGATTTCGAAATCAGATCTCTATTTTCAAATCTTGTCATAAATTATGTACACTAATACATTTGTGTTAACATACGTCGACCAGCTTACAGTAATCCTGCATAACATCATCCAAAAAAATGTCAGCAATGTTTTTCAAATCCCAAAACGTACGGGGGGATAATCACTTGTAGTTTCAAGGATGATCCTATGTTTTATGGACATCAAATTGTGCGTACATCTTTTAGTTTATTCGTTCAGAGATAAAACGTAGAGAGGTACAGTCGTCCAAAAAATTGGGCACCATCAACCAAACGTTTCTTCAGAACTTCATTGTTGAAGTTGTCAAGTTTGAGCTCAATTATCTCGGTTCTTTCAAATGATATCAAAAAGTGACTAACTGACAAAATAGTTTTGATATTATGATGAACATTGTAACAGTTGCTCACTTTTTGACACCTTTCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>250 247 140 129 123 111</canonical_bands>
                <polymorphic_bands>263 250 247 129 111</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>250 247 140 129 111 91 32</canonical_bands>
                <polymorphic_bands>250 247 231 129 111 32</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 374 123</canonical_bands>
                <polymorphic_bands>626 374</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTATTGAGGGTGTGGAAGTAG</pcr_primer_p1>
		<pcr_primer_p2>ATGATGTTATGCAGGATTACTGT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTTATTGAGGGTGTGGAAGTAGACTTGCTCAAATGGTTTATCATATTTTTCATCGTTTCCAGTGTGAGTGTTTCAAAAGCTTCTGACTAGTAAAGTTTTTTCTCCGATTCCGAAACACAACAAAAAATTCTACAACTGATTTCGAAATCAGATCTCTATTTTCAAATCTTGTCATAAATTATGTACACTAATACATTTGTGTTAACATACGTCGACCAGCTTACAGTAATCCTGCATAACATCAT</canonical_amplicon>
		<polymorphic_amplicon>CTTATTGAGGGTGTGGAAGTAGACTTGCTCAAATGGTTTATCATATTTTTCATCGTTTCCAGTGTGAGTGTTTCAAAAGYTTCTGACTAGTAAAGTTTTTTCTCCGATTCCGAAACACAACAAAAAATTCTACAACTGATTTCGAAATCAGATCTCTATTTTCAAATCTTGTCATAAATTATGTACACTAATACATTTGTGTTAACATACGTCGACCAGCTTACAGTAATCCTGCATAACATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37318</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>96690</contig_pos>
        <strand>+</strand>
        <context>TCTCTATTTT[C/T]AAATCTTGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACACAACAAAAAATTCTACAACTGATTTCGAAATCAGATCTCTATTTT</left_flank>
        <right_flank>AAATCTTGTCATAAATTATGTACACTAATACATTTGTGTTAACATACGTC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACTAAAAATTGTTCATAATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTTCAATTTTTTTAATTTCAGATCACTAGGAGCCGAAAATAATGCTTATTGAGGGTGTGGAAGTAGACTTGCTCAAATGGTTTATCATATTTTTCATCGTTTCCAGTGTGAGTGTTTCAAAAGCTTCTGACTAGTAAAGTTTTTTCTCCGATTCCGAAACACAACAAAAAATTCTACAACTGATTTCGAAATCAGATCTCTATTTTCAAATCTTGTCATAAATTATGTACACTAATACATTTGTGTTAACATACGTCGACCAGCTTACAGTAATCCTGCATAACATCATCCAAAAAAATGTCAGCAATGTTTTTCAAATCCCAAAACGTACGGGGGGATAATCACTTGTAGTTTCAAGGATGATCCTATGTTTTATGGACATCAAATTGTGCGTACATCTTTTAGTTTATTCGTTCAGAGATAAAACGTAGAGAGGTACAGTCGTCCAAAAAATTGGGCACCATCAACCAAACGTTTCTTCAGAACTTCATTGTTGAAGTTGTCAAGTTTGAGCTCAATTATCTCGGTTCTTTCAAATGATATCAAAAAGTGACTAACTGACAAAATAGTTTTGATATTATGATGAACATTGTAACAGTTGCTCACTTTTTGACACCTTTCGAAAAAACGAGATAATTGAGCTCAAAGTTTGGTGTGCCTTGTTTTAGAATCTATACGGTATTTCGATTTATAGTTAGTATATAAAC</canonical>
            <polymorphic>CAACTAAAAATTGTTCATAATAATATCATAAACATTTTATCAGTTGACCACTTTCTTAAATCTTTCACAGGAACAAAATAATTATGCTTGAATCGCCCCGGCGGCAACCGCGTTGCTCAGGTGCTAACGGCGCCTCACCTTGGAATCAATGGTTCCTGTAACAGCTATCAAAAATGTGCCACTTGACAAAATTTTTATCATAATATCAGTAACATTTTTCAGTTGACCACTTTTTGATATCTTCGATAGGAACCGAGGAAAATAGGTTCAAACAGGACTCTCAGACCTTTAAGCTTCAATTTTTTTAATTTCAGATCACTAGGAGCCGAAAATAATGCTTATTGAGGGTGTGGAAGTAGACTTGCTCAAATGGTTTATCATATTTTTCATCGTTTCCAGTGTGAGTGTTTCAAAAGCTTCTGACTAGTAAAGTTTTTTCTCCGATTCCGAAACACAACAAAAAATTCTACAACTGATTTCGAAATCAGATCTCTATTTTYAAATCTTGTCATAAATTATGTACACTAATACATTTGTGTTAACATACGTCGACCAGCTTACAGTAATCCTGCATAACATCATCCAAAAAAATGTCAGCAATGTTTTTCAAATCCCAAAACGTACGGGGGGATAATCACTTGTAGTTTCAAGGATGATCCTATGTTTTATGGACATCAAATTGTGCGTACATCTTTTAGTTTATTCGTTCAGAGATAAAACGTAGAGAGGTACAGTCGTCCAAAAAATTGGGCACCATCAACCAAACGTTTCTTCAGAACTTCATTGTTGAAGTTGTCAAGTTTGAGCTCAATTATCTCGGTTCTTTCAAATGATATCAAAAAGTGACTAACTGACAAAATAGTTTTGATATTATGATGAACATTGTAACAGTTGCTCACTTTTTGACACCTTTCGAAAAAACGAGATAATTGAGCTCAAAGTTTGGTGTGCCTTGTTTTAGAATCTATACGGTATTTCGATTTATAGTTAGTATATAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTATTGAGGGTGTGGAAGTAG</pcr_primer_p1>
		<pcr_primer_p2>ATGATGTTATGCAGGATTACTGT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTTATTGAGGGTGTGGAAGTAGACTTGCTCAAATGGTTTATCATATTTTTCATCGTTTCCAGTGTGAGTGTTTCAAAAGCTTCTGACTAGTAAAGTTTTTTCTCCGATTCCGAAACACAACAAAAAATTCTACAACTGATTTCGAAATCAGATCTCTATTTTCAAATCTTGTCATAAATTATGTACACTAATACATTTGTGTTAACATACGTCGACCAGCTTACAGTAATCCTGCATAACATCAT</canonical_amplicon>
		<polymorphic_amplicon>CTTATTGAGGGTGTGGAAGTAGACTTGCTCAAATGGTTTATCATATTTTTCATCGTTTCCAGTGTGAGTGTTTCAAAAGCTTCTGACTAGTAAAGTTTTTTCTCCGATTCCGAAACACAACAAAAAATTCTACAACTGATTTCGAAATCAGATCTCTATTTTYAAATCTTGTCATAAATTATGTACACTAATACATTTGTGTTAACATACGTCGACCAGCTTACAGTAATCCTGCATAACATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37319</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>97937</contig_pos>
        <strand></strand>
        <context>cttcaaaata[A/T]gaataatcag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCGCCTATGGTAAATTGTCTCGCGCGTTATTTGTCAAGAGCTTCAAAATA</left_flank>
        <right_flank>GAATAATCAGGTCCTACTTTTGGTTTTACTCGGGGCCGATTTAAACGGAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATCTACCGTACCATTTCGATCGTGTCGAAGTGGAACAGTGTTTGAATACACTTTTCGGTACACGAAGCATCTTTCTGCCAGAGACTACTGTAGCAGTCTCAATTCCGGCACGTGGATTCTGTAGTACATCTGAATTTCACATGTTTTCGAAACAAGATGTATCGAAAGAGAGTCCGACTGGGTATTCGTACGAAATGGTATCGAGTAGTGTGCAGGCAGCAAGCACAGATGCTATCAGTTTTTTCGGTTGCTCATCTCGCATTTTGGCTGGTGTAACGATTTATTTGGGAATTGGAGGAGAGTTGATGGAAAGTGCATATCGGATTAATTGCAATTTAATTCTGATGAAAATGATTCGGAATGTTCATCGATACCATCGATGGATTCCATTTTCGAGGACAGCTATTTATATAAAAAGTCTTTTGAGGGACAGTTGGAGACCAGTGGCGCCTATGGTAAATTGTCTCGCGCGTTATTTGTCAAGAGCTTCAAAATAAGAATAATCAGGTCCTACTTTTGGTTTTACTCGGGGCCGATTTAAACGGAAAATGTCAGAATGAGCGGAGCCTAATCGTGTTTATACTCATTTCGAAGCTTTTGACAAGTTGAATAAGAATATTCACTTCAAATTTTGAATTTCGTCTCATAAAATCTGTTGTATTCTATCTAAGTGAACATCCAAAATTGGCTAATTTCTACTAAACATTGGTAAATAGTGAACTTCCAGAACTACATTCGCCCTCAACTGCGACACTCGGATGCGGAATCTTTTCGTTACCGTATCCGCCAATCCGTTTCCTCTCGTCCCAGCGGAGCACACGAAGAAATTATTCAACTTCAACGTCGTGTTGAAGACATGTTTGTGGCGAGACCCATCACTTGTCAACCGACTTCGGTTACTGTACATATGGGATTGAGGAGGCCATCGTCGATGAGAAGTTGTCGAATTCCTGCGGATATTAATTTGAATGTTACGCAGGTGAGGTTTTTCAGATCT</canonical>
            <polymorphic>CAAATCTACCGTACCATTTCGATCGTGTCGAAGTGGAACAGTGTTTGAATACACTTTTCGGTACACGAAGCATCTTTCTGCCAGAGACTACTGTAGCAGTCTCAATTCCGGCACGTGGATTCTGTAGTACATCTGAATTTCACATGTTTTCGAAACAAGATGTATCGAAAGAGAGTCCGACTGGGTATTCGTACGAAATGGTATCGAGTAGTGTGCAGGCAGCAAGCACAGATGCTATCAGTTTTTTCGGTTGCTCATCTCGCATTTTGGCTGGTGTAACGATTTATTTGGGAATTGGAGGAGAGTTGATGGAAAGTGCATATCGGATTAATTGCAATTTAATTCTGATGAAAATGATTCGGAATGTTCATCGATACCATCGATGGATTCCATTTTCGAGGACAGCTATTTATATAAAAAGTCTTTTGAGGGACAGTTGGAGACCAGTGGCGCCTATGGTAAATTGTCTCGCGCGTTATTTGTCAAGAGCTTCAAAATAWGAATAATCAGGTCCTACTTTTGGTTTTACTCGGGGCCGATTTAAACGGAAAATGTCAGAATGAGCGGAGCCTAATCGTGTTTATACTCATTTCGAAGCTTTTGACAAGTTGAATAAGAATATTCACTTCAAATTTTGAATTTCGTCTCATAAAATCTGTTGTATTCTATCTAAGTGAACATCCAAAATTGGCTAATTTCTACTAAACATTGGTAAATAGTGAACTTCCAGAACTACATTCGCCCTCAACTGCGACACTCGGATGCGGAATCTTTTCGTTACCGTATCCGCCAATCCGTTTCCTCTCGTCCCAGCGGAGCACACGAAGAAATTATTCAACTTCAACGTCGTGTTGAAGACATGTTTGTGGCGAGACCCATCACTTGTCAACCGACTTCGGTTACTGTACATATGGGATTGAGGAGGCCATCGTCGATGAGAAGTTGTCGAATTCCTGCGGATATTAATTTGAATGTTACGCAGGTGAGGTTTTTCAGATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCCTATGGTAAATTGTCTC</pcr_primer_p1>
		<pcr_primer_p2>CAATTTTGGATGTTCACTTAGAT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CGCCTATGGTAAATTGTCTCGCGCGTTATTTGTCAAGAGCTTCAAAATAAGAATAATCAGGTCCTACTTTTGGTTTTACTCGGGGCCGATTTAAACGGAAAATGTCAGAATGAGCGGAGCCTAATCGTGTTTATACTCATTTCGAAGCTTTTGACAAGTTGAATAAGAATATTCACTTCAAATTTTGAATTTCGTCTCATAAAATCTGTTGTATTCTATCTAAGTGAACATCCAAAATTG</canonical_amplicon>
		<polymorphic_amplicon>CGCCTATGGTAAATTGTCTCGCGCGTTATTTGTCAAGAGCTTCAAAATAWGAATAATCAGGTCCTACTTTTGGTTTTACTCGGGGCCGATTTAAACGGAAAATGTCAGAATGAGCGGAGCCTAATCGTGTTTATACTCATTTCGAAGCTTTTGACAAGTTGAATAAGAATATTCACTTCAAATTTTGAATTTCGTCTCATAAAATCTGTTGTATTCTATCTAAGTGAACATCCAAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37320</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>97963</contig_pos>
        <strand></strand>
        <context>acttttggtt[T/A]tactcggggc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTATTTGTCAAGAGCTTCAAAATAAGAATAATCAGGTCCTACTTTTGGTT</left_flank>
        <right_flank>TACTCGGGGCCGATTTAAACGGAAAATGTCAGAATGAGCGGAGCCTAATC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCGAAGTGGAACAGTGTTTGAATACACTTTTCGGTACACGAAGCATCTTTCTGCCAGAGACTACTGTAGCAGTCTCAATTCCGGCACGTGGATTCTGTAGTACATCTGAATTTCACATGTTTTCGAAACAAGATGTATCGAAAGAGAGTCCGACTGGGTATTCGTACGAAATGGTATCGAGTAGTGTGCAGGCAGCAAGCACAGATGCTATCAGTTTTTTCGGTTGCTCATCTCGCATTTTGGCTGGTGTAACGATTTATTTGGGAATTGGAGGAGAGTTGATGGAAAGTGCATATCGGATTAATTGCAATTTAATTCTGATGAAAATGATTCGGAATGTTCATCGATACCATCGATGGATTCCATTTTCGAGGACAGCTATTTATATAAAAAGTCTTTTGAGGGACAGTTGGAGACCAGTGGCGCCTATGGTAAATTGTCTCGCGCGTTATTTGTCAAGAGCTTCAAAATAAGAATAATCAGGTCCTACTTTTGGTTTTACTCGGGGCCGATTTAAACGGAAAATGTCAGAATGAGCGGAGCCTAATCGTGTTTATACTCATTTCGAAGCTTTTGACAAGTTGAATAAGAATATTCACTTCAAATTTTGAATTTCGTCTCATAAAATCTGTTGTATTCTATCTAAGTGAACATCCAAAATTGGCTAATTTCTACTAAACATTGGTAAATAGTGAACTTCCAGAACTACATTCGCCCTCAACTGCGACACTCGGATGCGGAATCTTTTCGTTACCGTATCCGCCAATCCGTTTCCTCTCGTCCCAGCGGAGCACACGAAGAAATTATTCAACTTCAACGTCGTGTTGAAGACATGTTTGTGGCGAGACCCATCACTTGTCAACCGACTTCGGTTACTGTACATATGGGATTGAGGAGGCCATCGTCGATGAGAAGTTGTCGAATTCCTGCGGATATTAATTTGAATGTTACGCAGGTGAGGTTTTTCAGATCTTTTTAACTAAATTCAGTTGTGGTGAC</canonical>
            <polymorphic>GTCGAAGTGGAACAGTGTTTGAATACACTTTTCGGTACACGAAGCATCTTTCTGCCAGAGACTACTGTAGCAGTCTCAATTCCGGCACGTGGATTCTGTAGTACATCTGAATTTCACATGTTTTCGAAACAAGATGTATCGAAAGAGAGTCCGACTGGGTATTCGTACGAAATGGTATCGAGTAGTGTGCAGGCAGCAAGCACAGATGCTATCAGTTTTTTCGGTTGCTCATCTCGCATTTTGGCTGGTGTAACGATTTATTTGGGAATTGGAGGAGAGTTGATGGAAAGTGCATATCGGATTAATTGCAATTTAATTCTGATGAAAATGATTCGGAATGTTCATCGATACCATCGATGGATTCCATTTTCGAGGACAGCTATTTATATAAAAAGTCTTTTGAGGGACAGTTGGAGACCAGTGGCGCCTATGGTAAATTGTCTCGCGCGTTATTTGTCAAGAGCTTCAAAATAAGAATAATCAGGTCCTACTTTTGGTTWTACTCGGGGCCGATTTAAACGGAAAATGTCAGAATGAGCGGAGCCTAATCGTGTTTATACTCATTTCGAAGCTTTTGACAAGTTGAATAAGAATATTCACTTCAAATTTTGAATTTCGTCTCATAAAATCTGTTGTATTCTATCTAAGTGAACATCCAAAATTGGCTAATTTCTACTAAACATTGGTAAATAGTGAACTTCCAGAACTACATTCGCCCTCAACTGCGACACTCGGATGCGGAATCTTTTCGTTACCGTATCCGCCAATCCGTTTCCTCTCGTCCCAGCGGAGCACACGAAGAAATTATTCAACTTCAACGTCGTGTTGAAGACATGTTTGTGGCGAGACCCATCACTTGTCAACCGACTTCGGTTACTGTACATATGGGATTGAGGAGGCCATCGTCGATGAGAAGTTGTCGAATTCCTGCGGATATTAATTTGAATGTTACGCAGGTGAGGTTTTTCAGATCTTTTTAACTAAATTCAGTTGTGGTGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCCTATGGTAAATTGTCTC</pcr_primer_p1>
		<pcr_primer_p2>CAATTTTGGATGTTCACTTAGAT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CGCCTATGGTAAATTGTCTCGCGCGTTATTTGTCAAGAGCTTCAAAATAAGAATAATCAGGTCCTACTTTTGGTTTTACTCGGGGCCGATTTAAACGGAAAATGTCAGAATGAGCGGAGCCTAATCGTGTTTATACTCATTTCGAAGCTTTTGACAAGTTGAATAAGAATATTCACTTCAAATTTTGAATTTCGTCTCATAAAATCTGTTGTATTCTATCTAAGTGAACATCCAAAATTG</canonical_amplicon>
		<polymorphic_amplicon>CGCCTATGGTAAATTGTCTCGCGCGTTATTTGTCAAGAGCTTCAAAATAAGAATAATCAGGTCCTACTTTTGGTTWTACTCGGGGCCGATTTAAACGGAAAATGTCAGAATGAGCGGAGCCTAATCGTGTTTATACTCATTTCGAAGCTTTTGACAAGTTGAATAAGAATATTCACTTCAAATTTTGAATTTCGTCTCATAAAATCTGTTGTATTCTATCTAAGTGAACATCCAAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37321</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>97975</contig_pos>
        <strand></strand>
        <context>actcggggcc[G/C]atttaaacgg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AGCTTCAAAATAAGAATAATCAGGTCCTACTTTTGGTTTTACTCGGGGCC</left_flank>
        <right_flank>ATTTAAACGGAAAATGTCAGAATGAGCGGAGCCTAATCGTGTTTATACTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTGTTTGAATACACTTTTCGGTACACGAAGCATCTTTCTGCCAGAGACTACTGTAGCAGTCTCAATTCCGGCACGTGGATTCTGTAGTACATCTGAATTTCACATGTTTTCGAAACAAGATGTATCGAAAGAGAGTCCGACTGGGTATTCGTACGAAATGGTATCGAGTAGTGTGCAGGCAGCAAGCACAGATGCTATCAGTTTTTTCGGTTGCTCATCTCGCATTTTGGCTGGTGTAACGATTTATTTGGGAATTGGAGGAGAGTTGATGGAAAGTGCATATCGGATTAATTGCAATTTAATTCTGATGAAAATGATTCGGAATGTTCATCGATACCATCGATGGATTCCATTTTCGAGGACAGCTATTTATATAAAAAGTCTTTTGAGGGACAGTTGGAGACCAGTGGCGCCTATGGTAAATTGTCTCGCGCGTTATTTGTCAAGAGCTTCAAAATAAGAATAATCAGGTCCTACTTTTGGTTTTACTCGGGGCCGATTTAAACGGAAAATGTCAGAATGAGCGGAGCCTAATCGTGTTTATACTCATTTCGAAGCTTTTGACAAGTTGAATAAGAATATTCACTTCAAATTTTGAATTTCGTCTCATAAAATCTGTTGTATTCTATCTAAGTGAACATCCAAAATTGGCTAATTTCTACTAAACATTGGTAAATAGTGAACTTCCAGAACTACATTCGCCCTCAACTGCGACACTCGGATGCGGAATCTTTTCGTTACCGTATCCGCCAATCCGTTTCCTCTCGTCCCAGCGGAGCACACGAAGAAATTATTCAACTTCAACGTCGTGTTGAAGACATGTTTGTGGCGAGACCCATCACTTGTCAACCGACTTCGGTTACTGTACATATGGGATTGAGGAGGCCATCGTCGATGAGAAGTTGTCGAATTCCTGCGGATATTAATTTGAATGTTACGCAGGTGAGGTTTTTCAGATCTTTTTAACTAAATTCAGTTGTGGTGACCTCCTAGATTGG</canonical>
            <polymorphic>CAGTGTTTGAATACACTTTTCGGTACACGAAGCATCTTTCTGCCAGAGACTACTGTAGCAGTCTCAATTCCGGCACGTGGATTCTGTAGTACATCTGAATTTCACATGTTTTCGAAACAAGATGTATCGAAAGAGAGTCCGACTGGGTATTCGTACGAAATGGTATCGAGTAGTGTGCAGGCAGCAAGCACAGATGCTATCAGTTTTTTCGGTTGCTCATCTCGCATTTTGGCTGGTGTAACGATTTATTTGGGAATTGGAGGAGAGTTGATGGAAAGTGCATATCGGATTAATTGCAATTTAATTCTGATGAAAATGATTCGGAATGTTCATCGATACCATCGATGGATTCCATTTTCGAGGACAGCTATTTATATAAAAAGTCTTTTGAGGGACAGTTGGAGACCAGTGGCGCCTATGGTAAATTGTCTCGCGCGTTATTTGTCAAGAGCTTCAAAATAAGAATAATCAGGTCCTACTTTTGGTTTTACTCGGGGCCSATTTAAACGGAAAATGTCAGAATGAGCGGAGCCTAATCGTGTTTATACTCATTTCGAAGCTTTTGACAAGTTGAATAAGAATATTCACTTCAAATTTTGAATTTCGTCTCATAAAATCTGTTGTATTCTATCTAAGTGAACATCCAAAATTGGCTAATTTCTACTAAACATTGGTAAATAGTGAACTTCCAGAACTACATTCGCCCTCAACTGCGACACTCGGATGCGGAATCTTTTCGTTACCGTATCCGCCAATCCGTTTCCTCTCGTCCCAGCGGAGCACACGAAGAAATTATTCAACTTCAACGTCGTGTTGAAGACATGTTTGTGGCGAGACCCATCACTTGTCAACCGACTTCGGTTACTGTACATATGGGATTGAGGAGGCCATCGTCGATGAGAAGTTGTCGAATTCCTGCGGATATTAATTTGAATGTTACGCAGGTGAGGTTTTTCAGATCTTTTTAACTAAATTCAGTTGTGGTGACCTCCTAGATTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCCTATGGTAAATTGTCTC</pcr_primer_p1>
		<pcr_primer_p2>CAATTTTGGATGTTCACTTAGAT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CGCCTATGGTAAATTGTCTCGCGCGTTATTTGTCAAGAGCTTCAAAATAAGAATAATCAGGTCCTACTTTTGGTTTTACTCGGGGCCGATTTAAACGGAAAATGTCAGAATGAGCGGAGCCTAATCGTGTTTATACTCATTTCGAAGCTTTTGACAAGTTGAATAAGAATATTCACTTCAAATTTTGAATTTCGTCTCATAAAATCTGTTGTATTCTATCTAAGTGAACATCCAAAATTG</canonical_amplicon>
		<polymorphic_amplicon>CGCCTATGGTAAATTGTCTCGCGCGTTATTTGTCAAGAGCTTCAAAATAAGAATAATCAGGTCCTACTTTTGGTTTTACTCGGGGCCSATTTAAACGGAAAATGTCAGAATGAGCGGAGCCTAATCGTGTTTATACTCATTTCGAAGCTTTTGACAAGTTGAATAAGAATATTCACTTCAAATTTTGAATTTCGTCTCATAAAATCTGTTGTATTCTATCTAAGTGAACATCCAAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37322</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>98084</contig_pos>
        <strand>+</strand>
        <context>gaatttcGTC[C/T]CATAAAATCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTTTTGACAAGTTGAATAAGAATATTCACTTCAAATTTTGAATTTCGTC</left_flank>
        <right_flank>CATAAAATCTGTTGTATTCTATCTAAGTGAACATCCAAAATTGGCTAATT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGAAACAAGATGTATCGAAAGAGAGTCCGACTGGGTATTCGTACGAAATGGTATCGAGTAGTGTGCAGGCAGCAAGCACAGATGCTATCAGTTTTTTCGGTTGCTCATCTCGCATTTTGGCTGGTGTAACGATTTATTTGGGAATTGGAGGAGAGTTGATGGAAAGTGCATATCGGATTAATTGCAATTTAATTCTGATGAAAATGATTCGGAATGTTCATCGATACCATCGATGGATTCCATTTTCGAGGACAGCTATTTATATAAAAAGTCTTTTGAGGGACAGTTGGAGACCAGTGGCGCCTATGGTAAATTGTCTCGCGCGTTATTTGTCAAGAGCTTCAAAATAAGAATAATCAGGTCCTACTTTTGGTTTTACTCGGGGCCGATTTAAACGGAAAATGTCAGAATGAGCGGAGCCTAATCGTGTTTATACTCATTTCGAAGCTTTTGACAAGTTGAATAAGAATATTCACTTCAAATTTTGAATTTCGTCTCATAAAATCTGTTGTATTCTATCTAAGTGAACATCCAAAATTGGCTAATTTCTACTAAACATTGGTAAATAGTGAACTTCCAGAACTACATTCGCCCTCAACTGCGACACTCGGATGCGGAATCTTTTCGTTACCGTATCCGCCAATCCGTTTCCTCTCGTCCCAGCGGAGCACACGAAGAAATTATTCAACTTCAACGTCGTGTTGAAGACATGTTTGTGGCGAGACCCATCACTTGTCAACCGACTTCGGTTACTGTACATATGGGATTGAGGAGGCCATCGTCGATGAGAAGTTGTCGAATTCCTGCGGATATTAATTTGAATGTTACGCAGGTGAGGTTTTTCAGATCTTTTTAACTAAATTCAGTTGTGGTGACCTCCTAGATTGGATTTCTAGGCCACCAGTCCTTTTTGTACTAAAATATTATCTTCAAAAAATTTCAGATCACTCGAGAACGTCCACCTCCTCTTCGAATAGCAACTGATTTTATAATAGAT</canonical>
            <polymorphic>TTTCGAAACAAGATGTATCGAAAGAGAGTCCGACTGGGTATTCGTACGAAATGGTATCGAGTAGTGTGCAGGCAGCAAGCACAGATGCTATCAGTTTTTTCGGTTGCTCATCTCGCATTTTGGCTGGTGTAACGATTTATTTGGGAATTGGAGGAGAGTTGATGGAAAGTGCATATCGGATTAATTGCAATTTAATTCTGATGAAAATGATTCGGAATGTTCATCGATACCATCGATGGATTCCATTTTCGAGGACAGCTATTTATATAAAAAGTCTTTTGAGGGACAGTTGGAGACCAGTGGCGCCTATGGTAAATTGTCTCGCGCGTTATTTGTCAAGAGCTTCAAAATAAGAATAATCAGGTCCTACTTTTGGTTTTACTCGGGGCCGATTTAAACGGAAAATGTCAGAATGAGCGGAGCCTAATCGTGTTTATACTCATTTCGAAGCTTTTGACAAGTTGAATAAGAATATTCACTTCAAATTTTGAATTTCGTCYCATAAAATCTGTTGTATTCTATCTAAGTGAACATCCAAAATTGGCTAATTTCTACTAAACATTGGTAAATAGTGAACTTCCAGAACTACATTCGCCCTCAACTGCGACACTCGGATGCGGAATCTTTTCGTTACCGTATCCGCCAATCCGTTTCCTCTCGTCCCAGCGGAGCACACGAAGAAATTATTCAACTTCAACGTCGTGTTGAAGACATGTTTGTGGCGAGACCCATCACTTGTCAACCGACTTCGGTTACTGTACATATGGGATTGAGGAGGCCATCGTCGATGAGAAGTTGTCGAATTCCTGCGGATATTAATTTGAATGTTACGCAGGTGAGGTTTTTCAGATCTTTTTAACTAAATTCAGTTGTGGTGACCTCCTAGATTGGATTTCTAGGCCACCAGTCCTTTTTGTACTAAAATATTATCTTCAAAAAATTTCAGATCACTCGAGAACGTCCACCTCCTCTTCGAATAGCAACTGATTTTATAATAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCCTATGGTAAATTGTCTC</pcr_primer_p1>
		<pcr_primer_p2>TGTAGTTCTGGAAGTTCACTATTTA</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>CGCCTATGGTAAATTGTCTCGCGCGTTATTTGTCAAGAGCTTCAAAATAAGAATAATCAGGTCCTACTTTTGGTTTTACTCGGGGCCGATTTAAACGGAAAATGTCAGAATGAGCGGAGCCTAATCGTGTTTATACTCATTTCGAAGCTTTTGACAAGTTGAATAAGAATATTCACTTCAAATTTTGAATTTCGTCTCATAAAATCTGTTGTATTCTATCTAAGTGAACATCCAAAATTGGCTAATTTCTACTAAACATTGGTAAATAGTGAACTTCCAGAACTACA</canonical_amplicon>
		<polymorphic_amplicon>CGCCTATGGTAAATTGTCTCGCGCGTTATTTGTCAAGAGCTTCAAAATAAGAATAATCAGGTCCTACTTTTGGTTTTACTCGGGGCCGATTTAAACGGAAAATGTCAGAATGAGCGGAGCCTAATCGTGTTTATACTCATTTCGAAGCTTTTGACAAGTTGAATAAGAATATTCACTTCAAATTTTGAATTTCGTCYCATAAAATCTGTTGTATTCTATCTAAGTGAACATCCAAAATTGGCTAATTTCTACTAAACATTGGTAAATAGTGAACTTCCAGAACTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37323</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>133669</contig_pos>
        <strand>+</strand>
        <context>ATAATTGGTT[A/G]AGGCTATCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTCCTCCATCCTCTTTTTGTTTCATCAAATTCGAATCCATAATTGGTT</left_flank>
        <right_flank>AGGCTATCATTGTAGCTGATAAAGGGGATTCGACTTCTTTTTGAGATCGG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTCCATAAGTCAAAAAAAGCAAAATTCGTTTTCCATTCTTCAAAACTTTTGACTCATCGAACTCCAAATCCGTATGGATTCTCAGAAACCCCAATCTATTGGGATCAAATTCAAATTGTTCGATTTCTTGGTTTTTCAAATTCCTTGCAAACGTTACGAAACTATTCTCTCTTCCAATTGAATATAAAACTTGTAAATCTGATTCTTGGAGATCCAAAACTCGGTGTTTAGTTTTCTTTATACTTTTCAGCAGATTCCAAAAATCCAAATTCTTGCCAAACTCCAAGAAAATTTTCTGATCTTGCCGTAAATGTCCGTCCAATTTCAGAGAGCATCCCGCTGTATACTGTACTCCTTTCCAATTGAAATACGCGACTTTCACTCTATCCGTAACGTTGTTATAGGTCAGATAGGAATTCTGGAACTCCTGATTTTCTGATAATTTGATATTCCTCCATCCTCTTTTTGTTTCATCAAATTCGAATCCATAATTGGTTAAGGCTATCATTGTAGCTGATAAAGGGGATTCGACTTCTTTTTGAGATCGGGAACAGAAGAAATTTACTCTATGAGCATTAGATCGCTTTTTCGGGTCGCAAAGAAATGCGTAGTATCGTTTGTTGGCCCATTTGAAACGAGTTTGGGGGCAGTGAGATTGTTGAAACAGGTACTTTTTCAACAGTTTTTGCAGGCGGAGCTTCTGAAAACTTTTGTTGGTCCTTGACAACTTTGTAGCTTCATTATTTCAAACTTAAAGATGCAAAGTTTGATGTGGGTTATTTTTGTCAAGTGCTTCGAGTATACTTTTCTTTAATTTCTCGAGGTCTATGTGCATTCAGACGGAAAGTCTCAAAGTAGGCGGAGCCTAATCGTGTTCATGCTCATTTTGAAGGGTTAACCTACTAAGTCAGAATAGCATGTGTGATTCAAATTAAATTGATTTCGAAGCGAGCTATGAGAAAAAAGCAGATTAGGTTATTTGCGTTTCTCGAAGAATT</canonical>
            <polymorphic>CTCTCCATAAGTCAAAAAAAGCAAAATTCGTTTTCCATTCTTCAAAACTTTTGACTCATCGAACTCCAAATCCGTATGGATTCTCAGAAACCCCAATCTATTGGGATCAAATTCAAATTGTTCGATTTCTTGGTTTTTCAAATTCCTTGCAAACGTTACGAAACTATTCTCTCTTCCAATTGAATATAAAACTTGTAAATCTGATTCTTGGAGATCCAAAACTCGGTGTTTAGTTTTCTTTATACTTTTCAGCAGATTCCAAAAATCCAAATTCTTGCCAAACTCCAAGAAAATTTTCTGATCTTGCCGTAAATGTCCGTCCAATTTCAGAGAGCATCCCGCTGTATACTGTACTCCTTTCCAATTGAAATACGCGACTTTCACTCTATCCGTAACGTTGTTATAGGTCAGATAGGAATTCTGGAACTCCTGATTTTCTGATAATTTGATATTCCTCCATCCTCTTTTTGTTTCATCAAATTCGAATCCATAATTGGTTRAGGCTATCATTGTAGCTGATAAAGGGGATTCGACTTCTTTTTGAGATCGGGAACAGAAGAAATTTACTCTATGAGCATTAGATCGCTTTTTCGGGTCGCAAAGAAATGCGTAGTATCGTTTGTTGGCCCATTTGAAACGAGTTTGGGGGCAGTGAGATTGTTGAAACAGGTACTTTTTCAACAGTTTTTGCAGGCGGAGCTTCTGAAAACTTTTGTTGGTCCTTGACAACTTTGTAGCTTCATTATTTCAAACTTAAAGATGCAAAGTTTGATGTGGGTTATTTTTGTCAAGTGCTTCGAGTATACTTTTCTTTAATTTCTCGAGGTCTATGTGCATTCAGACGGAAAGTCTCAAAGTAGGCGGAGCCTAATCGTGTTCATGCTCATTTTGAAGGGTTAACCTACTAAGTCAGAATAGCATGTGTGATTCAAATTAAATTGATTTCGAAGCGAGCTATGAGAAAAAAGCAGATTAGGTTATTTGCGTTTCTCGAAGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>498 256 84 66 59 37</canonical_bands>
                <polymorphic_bands>754 84 66 59 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCCTGATTTTCTGATAATTTGA</pcr_primer_p1>
		<pcr_primer_p2>GTACCTGTTTCAACAATCTCACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTCCTGATTTTCTGATAATTTGATATTCCTCCATCCTCTTTTTGTTTCATCAAATTCGAATCCATAATTGGTTAAGGCTATCATTGTAGCTGATAAAGGGGATTCGACTTCTTTTTGAGATCGGGAACAGAAGAAATTTACTCTATGAGCATTAGATCGCTTTTTCGGGTCGCAAAGAAATGCGTAGTATCGTTTGTTGGCCCATTTGAAACGAGTTTGGGGGCAGTGAGATTGTTGAAACAGGTAC</canonical_amplicon>
		<polymorphic_amplicon>CTCCTGATTTTCTGATAATTTGATATTCCTCCATCCTCTTTTTGTTTCATCAAATTCGAATCCATAATTGGTTRAGGCTATCATTGTAGCTGATAAAGGGGATTCGACTTCTTTTTGAGATCGGGAACAGAAGAAATTTACTCTATGAGCATTAGATCGCTTTTTCGGGTCGCAAAGAAATGCGTAGTATCGTTTGTTGGCCCATTTGAAACGAGTTTGGGGGCAGTGAGATTGTTGAAACAGGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37324</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>133737</contig_pos>
        <strand>+</strand>
        <context>AGAAATTTAC[C/T]CTATGAGCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATAAAGGGGATTCGACTTCTTTTTGAGATCGGGAACAGAAGAAATTTAC</left_flank>
        <right_flank>CTATGAGCATTAGATCGCTTTTTCGGGTCGCAAAGAAATGCGTAGTATCG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCCGTATGGATTCTCAGAAACCCCAATCTATTGGGATCAAATTCAAATTGTTCGATTTCTTGGTTTTTCAAATTCCTTGCAAACGTTACGAAACTATTCTCTCTTCCAATTGAATATAAAACTTGTAAATCTGATTCTTGGAGATCCAAAACTCGGTGTTTAGTTTTCTTTATACTTTTCAGCAGATTCCAAAAATCCAAATTCTTGCCAAACTCCAAGAAAATTTTCTGATCTTGCCGTAAATGTCCGTCCAATTTCAGAGAGCATCCCGCTGTATACTGTACTCCTTTCCAATTGAAATACGCGACTTTCACTCTATCCGTAACGTTGTTATAGGTCAGATAGGAATTCTGGAACTCCTGATTTTCTGATAATTTGATATTCCTCCATCCTCTTTTTGTTTCATCAAATTCGAATCCATAATTGGTTAAGGCTATCATTGTAGCTGATAAAGGGGATTCGACTTCTTTTTGAGATCGGGAACAGAAGAAATTTACTCTATGAGCATTAGATCGCTTTTTCGGGTCGCAAAGAAATGCGTAGTATCGTTTGTTGGCCCATTTGAAACGAGTTTGGGGGCAGTGAGATTGTTGAAACAGGTACTTTTTCAACAGTTTTTGCAGGCGGAGCTTCTGAAAACTTTTGTTGGTCCTTGACAACTTTGTAGCTTCATTATTTCAAACTTAAAGATGCAAAGTTTGATGTGGGTTATTTTTGTCAAGTGCTTCGAGTATACTTTTCTTTAATTTCTCGAGGTCTATGTGCATTCAGACGGAAAGTCTCAAAGTAGGCGGAGCCTAATCGTGTTCATGCTCATTTTGAAGGGTTAACCTACTAAGTCAGAATAGCATGTGTGATTCAAATTAAATTGATTTCGAAGCGAGCTATGAGAAAAAAGCAGATTAGGTTATTTGCGTTTCTCGAAGAATTCAGGTTATATTAGGTTGTTTGGAAAGTTCATCCCATTTTTTATCTACTGTTTTCAAACTTGGTTTTCA</canonical>
            <polymorphic>AATCCGTATGGATTCTCAGAAACCCCAATCTATTGGGATCAAATTCAAATTGTTCGATTTCTTGGTTTTTCAAATTCCTTGCAAACGTTACGAAACTATTCTCTCTTCCAATTGAATATAAAACTTGTAAATCTGATTCTTGGAGATCCAAAACTCGGTGTTTAGTTTTCTTTATACTTTTCAGCAGATTCCAAAAATCCAAATTCTTGCCAAACTCCAAGAAAATTTTCTGATCTTGCCGTAAATGTCCGTCCAATTTCAGAGAGCATCCCGCTGTATACTGTACTCCTTTCCAATTGAAATACGCGACTTTCACTCTATCCGTAACGTTGTTATAGGTCAGATAGGAATTCTGGAACTCCTGATTTTCTGATAATTTGATATTCCTCCATCCTCTTTTTGTTTCATCAAATTCGAATCCATAATTGGTTAAGGCTATCATTGTAGCTGATAAAGGGGATTCGACTTCTTTTTGAGATCGGGAACAGAAGAAATTTACYCTATGAGCATTAGATCGCTTTTTCGGGTCGCAAAGAAATGCGTAGTATCGTTTGTTGGCCCATTTGAAACGAGTTTGGGGGCAGTGAGATTGTTGAAACAGGTACTTTTTCAACAGTTTTTGCAGGCGGAGCTTCTGAAAACTTTTGTTGGTCCTTGACAACTTTGTAGCTTCATTATTTCAAACTTAAAGATGCAAAGTTTGATGTGGGTTATTTTTGTCAAGTGCTTCGAGTATACTTTTCTTTAATTTCTCGAGGTCTATGTGCATTCAGACGGAAAGTCTCAAAGTAGGCGGAGCCTAATCGTGTTCATGCTCATTTTGAAGGGTTAACCTACTAAGTCAGAATAGCATGTGTGATTCAAATTAAATTGATTTCGAAGCGAGCTATGAGAAAAAAGCAGATTAGGTTATTTGCGTTTCTCGAAGAATTCAGGTTATATTAGGTTGTTTGGAAAGTTCATCCCATTTTTTATCTACTGTTTTCAAACTTGGTTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCTGATTTTCTGATAATTTGA</pcr_primer_p1>
		<pcr_primer_p2>GTACCTGTTTCAACAATCTCACT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTCCTGATTTTCTGATAATTTGATATTCCTCCATCCTCTTTTTGTTTCATCAAATTCGAATCCATAATTGGTTAAGGCTATCATTGTAGCTGATAAAGGGGATTCGACTTCTTTTTGAGATCGGGAACAGAAGAAATTTACTCTATGAGCATTAGATCGCTTTTTCGGGTCGCAAAGAAATGCGTAGTATCGTTTGTTGGCCCATTTGAAACGAGTTTGGGGGCAGTGAGATTGTTGAAACAGGTAC</canonical_amplicon>
		<polymorphic_amplicon>CTCCTGATTTTCTGATAATTTGATATTCCTCCATCCTCTTTTTGTTTCATCAAATTCGAATCCATAATTGGTTAAGGCTATCATTGTAGCTGATAAAGGGGATTCGACTTCTTTTTGAGATCGGGAACAGAAGAAATTTACYCTATGAGCATTAGATCGCTTTTTCGGGTCGCAAAGAAATGCGTAGTATCGTTTGTTGGCCCATTTGAAACGAGTTTGGGGGCAGTGAGATTGTTGAAACAGGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37325</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>134048</contig_pos>
        <strand></strand>
        <context>taatcgtgtt[C/T]atgctcattt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATGTGCATTCAGACGGAAAGTCTCAAAGTAGGCGGAGCCTAATCGTGTT</left_flank>
        <right_flank>ATGCTCATTTTGAAGGGTTAACCTACTAAGTCAGAATAGCATGTGTGATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCACTCTATCCGTAACGTTGTTATAGGTCAGATAGGAATTCTGGAACTCCTGATTTTCTGATAATTTGATATTCCTCCATCCTCTTTTTGTTTCATCAAATTCGAATCCATAATTGGTTAAGGCTATCATTGTAGCTGATAAAGGGGATTCGACTTCTTTTTGAGATCGGGAACAGAAGAAATTTACTCTATGAGCATTAGATCGCTTTTTCGGGTCGCAAAGAAATGCGTAGTATCGTTTGTTGGCCCATTTGAAACGAGTTTGGGGGCAGTGAGATTGTTGAAACAGGTACTTTTTCAACAGTTTTTGCAGGCGGAGCTTCTGAAAACTTTTGTTGGTCCTTGACAACTTTGTAGCTTCATTATTTCAAACTTAAAGATGCAAAGTTTGATGTGGGTTATTTTTGTCAAGTGCTTCGAGTATACTTTTCTTTAATTTCTCGAGGTCTATGTGCATTCAGACGGAAAGTCTCAAAGTAGGCGGAGCCTAATCGTGTTCATGCTCATTTTGAAGGGTTAACCTACTAAGTCAGAATAGCATGTGTGATTCAAATTAAATTGATTTCGAAGCGAGCTATGAGAAAAAAGCAGATTAGGTTATTTGCGTTTCTCGAAGAATTCAGGTTATATTAGGTTGTTTGGAAAGTTCATCCCATTTTTTATCTACTGTTTTCAAACTTGGTTTTCACGAACGGGGTAAAAGCGAGTGAGCTGTCGTTTTATCAGTACATTGGTGGGGTCTAATAGTGTCTACATCCCAACGGAGATCATTCACCTCTTTTCATGTAGTGAGATATGGTCACCGTTTCCACCCCTAACAATTAACGTTCCCGAACTGCCATTTTATTTTTATTTCGATCTCGCCTGAAAATTGATAAAATCAATCGCCGATTAGTGAAAACTAACAACGAAGATGCACCCTTTCAAACTATCATCACAACCTAGATTCATCATTTCGAAAAGGAGAATTTTGGTTGGGCGAAAATCTCGTCTCAAACT</canonical>
            <polymorphic>TTCACTCTATCCGTAACGTTGTTATAGGTCAGATAGGAATTCTGGAACTCCTGATTTTCTGATAATTTGATATTCCTCCATCCTCTTTTTGTTTCATCAAATTCGAATCCATAATTGGTTAAGGCTATCATTGTAGCTGATAAAGGGGATTCGACTTCTTTTTGAGATCGGGAACAGAAGAAATTTACTCTATGAGCATTAGATCGCTTTTTCGGGTCGCAAAGAAATGCGTAGTATCGTTTGTTGGCCCATTTGAAACGAGTTTGGGGGCAGTGAGATTGTTGAAACAGGTACTTTTTCAACAGTTTTTGCAGGCGGAGCTTCTGAAAACTTTTGTTGGTCCTTGACAACTTTGTAGCTTCATTATTTCAAACTTAAAGATGCAAAGTTTGATGTGGGTTATTTTTGTCAAGTGCTTCGAGTATACTTTTCTTTAATTTCTCGAGGTCTATGTGCATTCAGACGGAAAGTCTCAAAGTAGGCGGAGCCTAATCGTGTTYATGCTCATTTTGAAGGGTTAACCTACTAAGTCAGAATAGCATGTGTGATTCAAATTAAATTGATTTCGAAGCGAGCTATGAGAAAAAAGCAGATTAGGTTATTTGCGTTTCTCGAAGAATTCAGGTTATATTAGGTTGTTTGGAAAGTTCATCCCATTTTTTATCTACTGTTTTCAAACTTGGTTTTCACGAACGGGGTAAAAGCGAGTGAGCTGTCGTTTTATCAGTACATTGGTGGGGTCTAATAGTGTCTACATCCCAACGGAGATCATTCACCTCTTTTCATGTAGTGAGATATGGTCACCGTTTCCACCCCTAACAATTAACGTTCCCGAACTGCCATTTTATTTTTATTTCGATCTCGCCTGAAAATTGATAAAATCAATCGCCGATTAGTGAAAACTAACAACGAAGATGCACCCTTTCAAACTATCATCACAACCTAGATTCATCATTTCGAAAAGGAGAATTTTGGTTGGGCGAAAATCTCGTCTCAAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 244 216 40</canonical_bands>
                <polymorphic_bands>540 244 216</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAACTTAAAGATGCAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GAGAAACGCAAATAACCTAATCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAACTTAAAGATGCAAAGTTTGATGTGGGTTATTTTTGTCAAGTGCTTCGAGTATACTTTTCTTTAATTTCTCGAGGTCTATGTGCATTCAGACGGAAAGTCTCAAAGTAGGCGGAGCCTAATCGTGTTCATGCTCATTTTGAAGGGTTAACCTACTAAGTCAGAATAGCATGTGTGATTCAAATTAAATTGATTTCGAAGCGAGCTATGAGAAAAAAGCAGATTAGGTTATTTGCGTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAACTTAAAGATGCAAAGTTTGATGTGGGTTATTTTTGTCAAGTGCTTCGAGTATACTTTTCTTTAATTTCTCGAGGTCTATGTGCATTCAGACGGAAAGTCTCAAAGTAGGCGGAGCCTAATCGTGTTYATGCTCATTTTGAAGGGTTAACCTACTAAGTCAGAATAGCATGTGTGATTCAAATTAAATTGATTTCGAAGCGAGCTATGAGAAAAAAGCAGATTAGGTTATTTGCGTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37326</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>134070</contig_pos>
        <strand>+</strand>
        <context>gaagGGTTAA[A/C]CWACTAAGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTCAAAGTAGGCGGAGCCTAATCGTGTTCATGCTCATTTTGAAGGGTTAA</left_flank>
        <right_flank>CTACTAAGTCAGAATAGCATGTGTGATTCAAATTAAATTGATTTCGAAGC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATAGGTCAGATAGGAATTCTGGAACTCCTGATTTTCTGATAATTTGATATTCCTCCATCCTCTTTTTGTTTCATCAAATTCGAATCCATAATTGGTTAAGGCTATCATTGTAGCTGATAAAGGGGATTCGACTTCTTTTTGAGATCGGGAACAGAAGAAATTTACTCTATGAGCATTAGATCGCTTTTTCGGGTCGCAAAGAAATGCGTAGTATCGTTTGTTGGCCCATTTGAAACGAGTTTGGGGGCAGTGAGATTGTTGAAACAGGTACTTTTTCAACAGTTTTTGCAGGCGGAGCTTCTGAAAACTTTTGTTGGTCCTTGACAACTTTGTAGCTTCATTATTTCAAACTTAAAGATGCAAAGTTTGATGTGGGTTATTTTTGTCAAGTGCTTCGAGTATACTTTTCTTTAATTTCTCGAGGTCTATGTGCATTCAGACGGAAAGTCTCAAAGTAGGCGGAGCCTAATCGTGTTCATGCTCATTTTGAAGGGTTAACCTACTAAGTCAGAATAGCATGTGTGATTCAAATTAAATTGATTTCGAAGCGAGCTATGAGAAAAAAGCAGATTAGGTTATTTGCGTTTCTCGAAGAATTCAGGTTATATTAGGTTGTTTGGAAAGTTCATCCCATTTTTTATCTACTGTTTTCAAACTTGGTTTTCACGAACGGGGTAAAAGCGAGTGAGCTGTCGTTTTATCAGTACATTGGTGGGGTCTAATAGTGTCTACATCCCAACGGAGATCATTCACCTCTTTTCATGTAGTGAGATATGGTCACCGTTTCCACCCCTAACAATTAACGTTCCCGAACTGCCATTTTATTTTTATTTCGATCTCGCCTGAAAATTGATAAAATCAATCGCCGATTAGTGAAAACTAACAACGAAGATGCACCCTTTCAAACTATCATCACAACCTAGATTCATCATTTCGAAAAGGAGAATTTTGGTTGGGCGAAAATCTCGTCTCAAACTGTGCGGGATGTATAAAGTACAT</canonical>
            <polymorphic>TATAGGTCAGATAGGAATTCTGGAACTCCTGATTTTCTGATAATTTGATATTCCTCCATCCTCTTTTTGTTTCATCAAATTCGAATCCATAATTGGTTAAGGCTATCATTGTAGCTGATAAAGGGGATTCGACTTCTTTTTGAGATCGGGAACAGAAGAAATTTACTCTATGAGCATTAGATCGCTTTTTCGGGTCGCAAAGAAATGCGTAGTATCGTTTGTTGGCCCATTTGAAACGAGTTTGGGGGCAGTGAGATTGTTGAAACAGGTACTTTTTCAACAGTTTTTGCAGGCGGAGCTTCTGAAAACTTTTGTTGGTCCTTGACAACTTTGTAGCTTCATTATTTCAAACTTAAAGATGCAAAGTTTGATGTGGGTTATTTTTGTCAAGTGCTTCGAGTATACTTTTCTTTAATTTCTCGAGGTCTATGTGCATTCAGACGGAAAGTCTCAAAGTAGGCGGAGCCTAATCGTGTTCATGCTCATTTTGAAGGGTTAAMCTACTAAGTCAGAATAGCATGTGTGATTCAAATTAAATTGATTTCGAAGCGAGCTATGAGAAAAAAGCAGATTAGGTTATTTGCGTTTCTCGAAGAATTCAGGTTATATTAGGTTGTTTGGAAAGTTCATCCCATTTTTTATCTACTGTTTTCAAACTTGGTTTTCACGAACGGGGTAAAAGCGAGTGAGCTGTCGTTTTATCAGTACATTGGTGGGGTCTAATAGTGTCTACATCCCAACGGAGATCATTCACCTCTTTTCATGTAGTGAGATATGGTCACCGTTTCCACCCCTAACAATTAACGTTCCCGAACTGCCATTTTATTTTTATTTCGATCTCGCCTGAAAATTGATAAAATCAATCGCCGATTAGTGAAAACTAACAACGAAGATGCACCCTTTCAAACTATCATCACAACCTAGATTCATCATTTCGAAAAGGAGAATTTTGGTTGGGCGAAAATCTCGTCTCAAACTGTGCGGGATGTATAAAGTACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTTAAC</site>
                <isoschizomers>
                    <enzyme>BstHPI</enzyme>
                    <enzyme>HpaI</enzyme>
                    <enzyme>KspAI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>402 270 233 95</canonical_bands>
                <polymorphic_bands>402 328 270</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAACTTAAAGATGCAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GAGAAACGCAAATAACCTAATCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAACTTAAAGATGCAAAGTTTGATGTGGGTTATTTTTGTCAAGTGCTTCGAGTATACTTTTCTTTAATTTCTCGAGGTCTATGTGCATTCAGACGGAAAGTCTCAAAGTAGGCGGAGCCTAATCGTGTTCATGCTCATTTTGAAGGGTTAACCTACTAAGTCAGAATAGCATGTGTGATTCAAATTAAATTGATTTCGAAGCGAGCTATGAGAAAAAAGCAGATTAGGTTATTTGCGTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAACTTAAAGATGCAAAGTTTGATGTGGGTTATTTTTGTCAAGTGCTTCGAGTATACTTTTCTTTAATTTCTCGAGGTCTATGTGCATTCAGACGGAAAGTCTCAAAGTAGGCGGAGCCTAATCGTGTTCATGCTCATTTTGAAGGGTTAAMCTACTAAGTCAGAATAGCATGTGTGATTCAAATTAAATTGATTTCGAAGCGAGCTATGAGAAAAAAGCAGATTAGGTTATTTGCGTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37327</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>134072</contig_pos>
        <strand>+</strand>
        <context>agGGTTAAMC[A/T]ACTAAGTCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAAGTAGGCGGAGCCTAATCGTGTTCATGCTCATTTTGAAGGGTTAACC</left_flank>
        <right_flank>ACTAAGTCAGAATAGCATGTGTGATTCAAATTAAATTGATTTCGAAGCGA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGTCAGATAGGAATTCTGGAACTCCTGATTTTCTGATAATTTGATATTCCTCCATCCTCTTTTTGTTTCATCAAATTCGAATCCATAATTGGTTAAGGCTATCATTGTAGCTGATAAAGGGGATTCGACTTCTTTTTGAGATCGGGAACAGAAGAAATTTACTCTATGAGCATTAGATCGCTTTTTCGGGTCGCAAAGAAATGCGTAGTATCGTTTGTTGGCCCATTTGAAACGAGTTTGGGGGCAGTGAGATTGTTGAAACAGGTACTTTTTCAACAGTTTTTGCAGGCGGAGCTTCTGAAAACTTTTGTTGGTCCTTGACAACTTTGTAGCTTCATTATTTCAAACTTAAAGATGCAAAGTTTGATGTGGGTTATTTTTGTCAAGTGCTTCGAGTATACTTTTCTTTAATTTCTCGAGGTCTATGTGCATTCAGACGGAAAGTCTCAAAGTAGGCGGAGCCTAATCGTGTTCATGCTCATTTTGAAGGGTTAACCTACTAAGTCAGAATAGCATGTGTGATTCAAATTAAATTGATTTCGAAGCGAGCTATGAGAAAAAAGCAGATTAGGTTATTTGCGTTTCTCGAAGAATTCAGGTTATATTAGGTTGTTTGGAAAGTTCATCCCATTTTTTATCTACTGTTTTCAAACTTGGTTTTCACGAACGGGGTAAAAGCGAGTGAGCTGTCGTTTTATCAGTACATTGGTGGGGTCTAATAGTGTCTACATCCCAACGGAGATCATTCACCTCTTTTCATGTAGTGAGATATGGTCACCGTTTCCACCCCTAACAATTAACGTTCCCGAACTGCCATTTTATTTTTATTTCGATCTCGCCTGAAAATTGATAAAATCAATCGCCGATTAGTGAAAACTAACAACGAAGATGCACCCTTTCAAACTATCATCACAACCTAGATTCATCATTTCGAAAAGGAGAATTTTGGTTGGGCGAAAATCTCGTCTCAAACTGTGCGGGATGTATAAAGTACATCA</canonical>
            <polymorphic>TAGGTCAGATAGGAATTCTGGAACTCCTGATTTTCTGATAATTTGATATTCCTCCATCCTCTTTTTGTTTCATCAAATTCGAATCCATAATTGGTTAAGGCTATCATTGTAGCTGATAAAGGGGATTCGACTTCTTTTTGAGATCGGGAACAGAAGAAATTTACTCTATGAGCATTAGATCGCTTTTTCGGGTCGCAAAGAAATGCGTAGTATCGTTTGTTGGCCCATTTGAAACGAGTTTGGGGGCAGTGAGATTGTTGAAACAGGTACTTTTTCAACAGTTTTTGCAGGCGGAGCTTCTGAAAACTTTTGTTGGTCCTTGACAACTTTGTAGCTTCATTATTTCAAACTTAAAGATGCAAAGTTTGATGTGGGTTATTTTTGTCAAGTGCTTCGAGTATACTTTTCTTTAATTTCTCGAGGTCTATGTGCATTCAGACGGAAAGTCTCAAAGTAGGCGGAGCCTAATCGTGTTCATGCTCATTTTGAAGGGTTAACCWACTAAGTCAGAATAGCATGTGTGATTCAAATTAAATTGATTTCGAAGCGAGCTATGAGAAAAAAGCAGATTAGGTTATTTGCGTTTCTCGAAGAATTCAGGTTATATTAGGTTGTTTGGAAAGTTCATCCCATTTTTTATCTACTGTTTTCAAACTTGGTTTTCACGAACGGGGTAAAAGCGAGTGAGCTGTCGTTTTATCAGTACATTGGTGGGGTCTAATAGTGTCTACATCCCAACGGAGATCATTCACCTCTTTTCATGTAGTGAGATATGGTCACCGTTTCCACCCCTAACAATTAACGTTCCCGAACTGCCATTTTATTTTTATTTCGATCTCGCCTGAAAATTGATAAAATCAATCGCCGATTAGTGAAAACTAACAACGAAGATGCACCCTTTCAAACTATCATCACAACCTAGATTCATCATTTCGAAAAGGAGAATTTTGGTTGGGCGAAAATCTCGTCTCAAACTGTGCGGGATGTATAAAGTACATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAACTTAAAGATGCAAAGT</pcr_primer_p1>
		<pcr_primer_p2>GAGAAACGCAAATAACCTAATCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAACTTAAAGATGCAAAGTTTGATGTGGGTTATTTTTGTCAAGTGCTTCGAGTATACTTTTCTTTAATTTCTCGAGGTCTATGTGCATTCAGACGGAAAGTCTCAAAGTAGGCGGAGCCTAATCGTGTTCATGCTCATTTTGAAGGGTTAACCTACTAAGTCAGAATAGCATGTGTGATTCAAATTAAATTGATTTCGAAGCGAGCTATGAGAAAAAAGCAGATTAGGTTATTTGCGTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAACTTAAAGATGCAAAGTTTGATGTGGGTTATTTTTGTCAAGTGCTTCGAGTATACTTTTCTTTAATTTCTCGAGGTCTATGTGCATTCAGACGGAAAGTCTCAAAGTAGGCGGAGCCTAATCGTGTTCATGCTCATTTTGAAGGGTTAACCWACTAAGTCAGAATAGCATGTGTGATTCAAATTAAATTGATTTCGAAGCGAGCTATGAGAAAAAAGCAGATTAGGTTATTTGCGTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37328</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>145703</contig_pos>
        <strand>+</strand>
        <context>GATCATCCGA[A/G]CCAAGAACTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCCAGAAATCACATCCACATCCCCTGATTCCAATGACCTGATCATCCGA</left_flank>
        <right_flank>CCAAGAACTTCTCGACGACCTGTTTAGCTGTATCCGAGGAAGGGGCGAAG</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTTTGAGCTGAGTTATCACTTGTCAAAGTTTCTTAATCTCATGAAAATTACAAGAAGCATTACGTCTTTCATTTTTGAACAATCATAACAATGCCTAGACTTGAGAAATCGCTTTTAGAATTTTAATAAATTTGAATCAAACGGAACATTATATTTCAACAAATTTGCGTGCTTCCCACATACTTATTTTCAAAGATATGCTCGCTTTTATCAGTCCGGGTCATTATGTGCCACCTTGTAATCTCAACTGCCTAGATTAATTCCTTGATAACCATTTGAATCCTAGCCTCAAGTTTCTAGAACTCTAGAACTCGAGCTTTTAGTTCTATTCTAGACTTGAAGAAATTAATCTCAAAAAAGTCTAGGATGGTTATTTGATAACCATCTAATACTCACTCTTATCATAAGTTCCCTTGCATCCCTTGAACACGAATCCAGGTTGGAACAATCCAGAAATCACATCCACATCCCCTGATTCCAATGACCTGATCATCCGAGCCAAGAACTTCTCGACGACCTGTTTAGCTGTATCCGAGGAAGGGGCGAAGACATTTCGAGTGAAGTAGAAGATATCATTAGGATGTCCTCCGAAAGAATCGGTTCCACGTAAATCTGGATCATCTGGGACGAAGGCCCAGGATGTTCCAGCTAGGAGACAGATGACAAGAATTGATGGGGACATTCGACTTGGAATGACATGAGGAGAGGCCGAGTCTTCCTTTTATGGGGAAGTATGCAAATCGAATTATTGCATTTTTGCGAGCGTGGGCGGTGGGAATGGGAACGATGTTTAAAAATTTTTTTTCGCTTTTTTAGGCAATGAAATATCTTGAGAACTTGACATAAAAGTTTGGGAATATGAATTAAAAAGGGAGATACCATGTGTATCAACATTTTAGAATTCCAAAGCTTTTGAAAAACTCAAAACTCTCGAATTCGAAGCCGTTGATTTTGCTTGAGCTACTGCCGCCATTCACGTCTTCTGATCAGAAGCCTCA</canonical>
            <polymorphic>AAGTTTGAGCTGAGTTATCACTTGTCAAAGTTTCTTAATCTCATGAAAATTACAAGAAGCATTACGTCTTTCATTTTTGAACAATCATAACAATGCCTAGACTTGAGAAATCGCTTTTAGAATTTTAATAAATTTGAATCAAACGGAACATTATATTTCAACAAATTTGCGTGCTTCCCACATACTTATTTTCAAAGATATGCTCGCTTTTATCAGTCCGGGTCATTATGTGCCACCTTGTAATCTCAACTGCCTAGATTAATTCCTTGATAACCATTTGAATCCTAGCCTCAAGTTTCTAGAACTCTAGAACTCGAGCTTTTAGTTCTATTCTAGACTTGAAGAAATTAATCTCAAAAAAGTCTAGGATGGTTATTTGATAACCATCTAATACTCACTCTTATCATAAGTTCCCTTGCATCCCTTGAACACGAATCCAGGTTGGAACAATCCAGAAATCACATCCACATCCCCTGATTCCAATGACCTGATCATCCGARCCAAGAACTTCTCGACGACCTGTTTAGCTGTATCCGAGGAAGGGGCGAAGACATTTCGAGTGAAGTAGAAGATATCATTAGGATGTCCTCCGAAAGAATCGGTTCCACGTAAATCTGGATCATCTGGGACGAAGGCCCAGGATGTTCCAGCTAGGAGACAGATGACAAGAATTGATGGGGACATTCGACTTGGAATGACATGAGGAGAGGCCGAGTCTTCCTTTTATGGGGAAGTATGCAAATCGAATTATTGCATTTTTGCGAGCGTGGGCGGTGGGAATGGGAACGATGTTTAAAAATTTTTTTTCGCTTTTTTAGGCAATGAAATATCTTGAGAACTTGACATAAAAGTTTGGGAATATGAATTAAAAAGGGAGATACCATGTGTATCAACATTTTAGAATTCCAAAGCTTTTGAAAAACTCAAAACTCTCGAATTCGAAGCCGTTGATTTTGCTTGAGCTACTGCCGCCATTCACGTCTTCTGATCAGAAGCCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>279 201 182 108 60 33 33 30 27 18 15 9 5</canonical_bands>
                <polymorphic_bands>279 209 201 108 60 33 33 30 18 15 9 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTCGAGCTTTTAGTTCTATTCT</pcr_primer_p1>
		<pcr_primer_p2>TCTACTTCACTCGAAATGTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>AACTCGAGCTTTTAGTTCTATTCTAGACTTGAAGAAATTAATCTCAAAAAAGTCTAGGATGGTTATTTGATAACCATCTAATACTCACTCTTATCATAAGTTCCCTTGCATCCCTTGAACACGAATCCAGGTTGGAACAATCCAGAAATCACATCCACATCCCCTGATTCCAATGACCTGATCATCCGAGCCAAGAACTTCTCGACGACCTGTTTAGCTGTATCCGAGGAAGGGGCGAAGACATTTCGAGTGAAGTAGA</canonical_amplicon>
		<polymorphic_amplicon>AACTCGAGCTTTTAGTTCTATTCTAGACTTGAAGAAATTAATCTCAAAAAAGTCTAGGATGGTTATTTGATAACCATCTAATACTCACTCTTATCATAAGTTCCCTTGCATCCCTTGAACACGAATCCAGGTTGGAACAATCCAGAAATCACATCCACATCCCCTGATTCCAATGACCTGATCATCCGARCCAAGAACTTCTCGACGACCTGTTTAGCTGTATCCGAGGAAGGGGCGAAGACATTTCGAGTGAAGTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37329</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>145866</contig_pos>
        <strand>+</strand>
        <context>AGGAGACAGA[G/T]GACAAGAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATCTGGATCATCTGGGACGAAGGCCCAGGATGTTCCAGCTAGGAGACAGA</left_flank>
        <right_flank>GACAAGAATTGATGGGGACATTCGACTTGGAATGACATGAGGAGAGGCCG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTGCGTGCTTCCCACATACTTATTTTCAAAGATATGCTCGCTTTTATCAGTCCGGGTCATTATGTGCCACCTTGTAATCTCAACTGCCTAGATTAATTCCTTGATAACCATTTGAATCCTAGCCTCAAGTTTCTAGAACTCTAGAACTCGAGCTTTTAGTTCTATTCTAGACTTGAAGAAATTAATCTCAAAAAAGTCTAGGATGGTTATTTGATAACCATCTAATACTCACTCTTATCATAAGTTCCCTTGCATCCCTTGAACACGAATCCAGGTTGGAACAATCCAGAAATCACATCCACATCCCCTGATTCCAATGACCTGATCATCCGAGCCAAGAACTTCTCGACGACCTGTTTAGCTGTATCCGAGGAAGGGGCGAAGACATTTCGAGTGAAGTAGAAGATATCATTAGGATGTCCTCCGAAAGAATCGGTTCCACGTAAATCTGGATCATCTGGGACGAAGGCCCAGGATGTTCCAGCTAGGAGACAGATGACAAGAATTGATGGGGACATTCGACTTGGAATGACATGAGGAGAGGCCGAGTCTTCCTTTTATGGGGAAGTATGCAAATCGAATTATTGCATTTTTGCGAGCGTGGGCGGTGGGAATGGGAACGATGTTTAAAAATTTTTTTTCGCTTTTTTAGGCAATGAAATATCTTGAGAACTTGACATAAAAGTTTGGGAATATGAATTAAAAAGGGAGATACCATGTGTATCAACATTTTAGAATTCCAAAGCTTTTGAAAAACTCAAAACTCTCGAATTCGAAGCCGTTGATTTTGCTTGAGCTACTGCCGCCATTCACGTCTTCTGATCAGAAGCCTCAAAATGATTCTTACTTTAGAATTTAGGAAATTTCCGTATAACTTGTTTTTACTTTGAGCCAATTTAACTCGTTTCCTGTCAAAGGTAAGAAAAAGGAATCAACTAATAAATTGTTTATCATAATATCACCAACATTCTATTAGTTGTCAAATTCTAGATATCTT</canonical>
            <polymorphic>AATTTGCGTGCTTCCCACATACTTATTTTCAAAGATATGCTCGCTTTTATCAGTCCGGGTCATTATGTGCCACCTTGTAATCTCAACTGCCTAGATTAATTCCTTGATAACCATTTGAATCCTAGCCTCAAGTTTCTAGAACTCTAGAACTCGAGCTTTTAGTTCTATTCTAGACTTGAAGAAATTAATCTCAAAAAAGTCTAGGATGGTTATTTGATAACCATCTAATACTCACTCTTATCATAAGTTCCCTTGCATCCCTTGAACACGAATCCAGGTTGGAACAATCCAGAAATCACATCCACATCCCCTGATTCCAATGACCTGATCATCCGAGCCAAGAACTTCTCGACGACCTGTTTAGCTGTATCCGAGGAAGGGGCGAAGACATTTCGAGTGAAGTAGAAGATATCATTAGGATGTCCTCCGAAAGAATCGGTTCCACGTAAATCTGGATCATCTGGGACGAAGGCCCAGGATGTTCCAGCTAGGAGACAGAKGACAAGAATTGATGGGGACATTCGACTTGGAATGACATGAGGAGAGGCCGAGTCTTCCTTTTATGGGGAAGTATGCAAATCGAATTATTGCATTTTTGCGAGCGTGGGCGGTGGGAATGGGAACGATGTTTAAAAATTTTTTTTCGCTTTTTTAGGCAATGAAATATCTTGAGAACTTGACATAAAAGTTTGGGAATATGAATTAAAAAGGGAGATACCATGTGTATCAACATTTTAGAATTCCAAAGCTTTTGAAAAACTCAAAACTCTCGAATTCGAAGCCGTTGATTTTGCTTGAGCTACTGCCGCCATTCACGTCTTCTGATCAGAAGCCTCAAAATGATTCTTACTTTAGAATTTAGGAAATTTCCGTATAACTTGTTTTTACTTTGAGCCAATTTAACTCGTTTCCTGTCAAAGGTAAGAAAAAGGAATCAACTAATAAATTGTTTATCATAATATCACCAACATTCTATTAGTTGTCAAATTCTAGATATCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACATTTCGAGTGAAGTAGAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTTAAACATCGTTCCCATTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GACATTTCGAGTGAAGTAGAAGATATCATTAGGATGTCCTCCGAAAGAATCGGTTCCACGTAAATCTGGATCATCTGGGACGAAGGCCCAGGATGTTCCAGCTAGGAGACAGATGACAAGAATTGATGGGGACATTCGACTTGGAATGACATGAGGAGAGGCCGAGTCTTCCTTTTATGGGGAAGTATGCAAATCGAATTATTGCATTTTTGCGAGCGTGGGCGGTGGGAATGGGAACGATGTTTAAA</canonical_amplicon>
		<polymorphic_amplicon>GACATTTCGAGTGAAGTAGAAGATATCATTAGGATGTCCTCCGAAAGAATCGGTTCCACGTAAATCTGGATCATCTGGGACGAAGGCCCAGGATGTTCCAGCTAGGAGACAGAKGACAAGAATTGATGGGGACATTCGACTTGGAATGACATGAGGAGAGGCCGAGTCTTCCTTTTATGGGGAAGTATGCAAATCGAATTATTGCATTTTTGCGAGCGTGGGCGGTGGGAATGGGAACGATGTTTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37330</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>145922</contig_pos>
        <strand>+</strand>
        <context>GGCCGAGTCT[A/T]CCTTTTATGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAATTGATGGGGACATTCGACTTGGAATGACATGAGGAGAGGCCGAGTCT</left_flank>
        <right_flank>CCTTTTATGGGGAAGTATGCAAATCGAATTATTGCATTTTTGCGAGCGTG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGTCATTATGTGCCACCTTGTAATCTCAACTGCCTAGATTAATTCCTTGATAACCATTTGAATCCTAGCCTCAAGTTTCTAGAACTCTAGAACTCGAGCTTTTAGTTCTATTCTAGACTTGAAGAAATTAATCTCAAAAAAGTCTAGGATGGTTATTTGATAACCATCTAATACTCACTCTTATCATAAGTTCCCTTGCATCCCTTGAACACGAATCCAGGTTGGAACAATCCAGAAATCACATCCACATCCCCTGATTCCAATGACCTGATCATCCGAGCCAAGAACTTCTCGACGACCTGTTTAGCTGTATCCGAGGAAGGGGCGAAGACATTTCGAGTGAAGTAGAAGATATCATTAGGATGTCCTCCGAAAGAATCGGTTCCACGTAAATCTGGATCATCTGGGACGAAGGCCCAGGATGTTCCAGCTAGGAGACAGATGACAAGAATTGATGGGGACATTCGACTTGGAATGACATGAGGAGAGGCCGAGTCTTCCTTTTATGGGGAAGTATGCAAATCGAATTATTGCATTTTTGCGAGCGTGGGCGGTGGGAATGGGAACGATGTTTAAAAATTTTTTTTCGCTTTTTTAGGCAATGAAATATCTTGAGAACTTGACATAAAAGTTTGGGAATATGAATTAAAAAGGGAGATACCATGTGTATCAACATTTTAGAATTCCAAAGCTTTTGAAAAACTCAAAACTCTCGAATTCGAAGCCGTTGATTTTGCTTGAGCTACTGCCGCCATTCACGTCTTCTGATCAGAAGCCTCAAAATGATTCTTACTTTAGAATTTAGGAAATTTCCGTATAACTTGTTTTTACTTTGAGCCAATTTAACTCGTTTCCTGTCAAAGGTAAGAAAAAGGAATCAACTAATAAATTGTTTATCATAATATCACCAACATTCTATTAGTTGTCAAATTCTAGATATCTTTGACAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTCACGGAGCCCTTCTATTA</canonical>
            <polymorphic>GGGTCATTATGTGCCACCTTGTAATCTCAACTGCCTAGATTAATTCCTTGATAACCATTTGAATCCTAGCCTCAAGTTTCTAGAACTCTAGAACTCGAGCTTTTAGTTCTATTCTAGACTTGAAGAAATTAATCTCAAAAAAGTCTAGGATGGTTATTTGATAACCATCTAATACTCACTCTTATCATAAGTTCCCTTGCATCCCTTGAACACGAATCCAGGTTGGAACAATCCAGAAATCACATCCACATCCCCTGATTCCAATGACCTGATCATCCGAGCCAAGAACTTCTCGACGACCTGTTTAGCTGTATCCGAGGAAGGGGCGAAGACATTTCGAGTGAAGTAGAAGATATCATTAGGATGTCCTCCGAAAGAATCGGTTCCACGTAAATCTGGATCATCTGGGACGAAGGCCCAGGATGTTCCAGCTAGGAGACAGATGACAAGAATTGATGGGGACATTCGACTTGGAATGACATGAGGAGAGGCCGAGTCTWCCTTTTATGGGGAAGTATGCAAATCGAATTATTGCATTTTTGCGAGCGTGGGCGGTGGGAATGGGAACGATGTTTAAAAATTTTTTTTCGCTTTTTTAGGCAATGAAATATCTTGAGAACTTGACATAAAAGTTTGGGAATATGAATTAAAAAGGGAGATACCATGTGTATCAACATTTTAGAATTCCAAAGCTTTTGAAAAACTCAAAACTCTCGAATTCGAAGCCGTTGATTTTGCTTGAGCTACTGCCGCCATTCACGTCTTCTGATCAGAAGCCTCAAAATGATTCTTACTTTAGAATTTAGGAAATTTCCGTATAACTTGTTTTTACTTTGAGCCAATTTAACTCGTTTCCTGTCAAAGGTAAGAAAAAGGAATCAACTAATAAATTGTTTATCATAATATCACCAACATTCTATTAGTTGTCAAATTCTAGATATCTTTGACAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTCACGGAGCCCTTCTATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACATTTCGAGTGAAGTAGAAGA</pcr_primer_p1>
		<pcr_primer_p2>TTTAAACATCGTTCCCATTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GACATTTCGAGTGAAGTAGAAGATATCATTAGGATGTCCTCCGAAAGAATCGGTTCCACGTAAATCTGGATCATCTGGGACGAAGGCCCAGGATGTTCCAGCTAGGAGACAGATGACAAGAATTGATGGGGACATTCGACTTGGAATGACATGAGGAGAGGCCGAGTCTTCCTTTTATGGGGAAGTATGCAAATCGAATTATTGCATTTTTGCGAGCGTGGGCGGTGGGAATGGGAACGATGTTTAAA</canonical_amplicon>
		<polymorphic_amplicon>GACATTTCGAGTGAAGTAGAAGATATCATTAGGATGTCCTCCGAAAGAATCGGTTCCACGTAAATCTGGATCATCTGGGACGAAGGCCCAGGATGTTCCAGCTAGGAGACAGATGACAAGAATTGATGGGGACATTCGACTTGGAATGACATGAGGAGAGGCCGAGTCTWCCTTTTATGGGGAAGTATGCAAATCGAATTATTGCATTTTTGCGAGCGTGGGCGGTGGGAATGGGAACGATGTTTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37331</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>145958</contig_pos>
        <strand>+</strand>
        <context>GAATTATTGC[A/C]TTTTTGCGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAGAGGCCGAGTCTTCCTTTTATGGGGAAGTATGCAAATCGAATTATTGC</left_flank>
        <right_flank>TTTTTGCGAGCGTGGGCGGTGGGAATGGGAACGATGTTTAAAAATTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATTAATTCCTTGATAACCATTTGAATCCTAGCCTCAAGTTTCTAGAACTCTAGAACTCGAGCTTTTAGTTCTATTCTAGACTTGAAGAAATTAATCTCAAAAAAGTCTAGGATGGTTATTTGATAACCATCTAATACTCACTCTTATCATAAGTTCCCTTGCATCCCTTGAACACGAATCCAGGTTGGAACAATCCAGAAATCACATCCACATCCCCTGATTCCAATGACCTGATCATCCGAGCCAAGAACTTCTCGACGACCTGTTTAGCTGTATCCGAGGAAGGGGCGAAGACATTTCGAGTGAAGTAGAAGATATCATTAGGATGTCCTCCGAAAGAATCGGTTCCACGTAAATCTGGATCATCTGGGACGAAGGCCCAGGATGTTCCAGCTAGGAGACAGATGACAAGAATTGATGGGGACATTCGACTTGGAATGACATGAGGAGAGGCCGAGTCTTCCTTTTATGGGGAAGTATGCAAATCGAATTATTGCATTTTTGCGAGCGTGGGCGGTGGGAATGGGAACGATGTTTAAAAATTTTTTTTCGCTTTTTTAGGCAATGAAATATCTTGAGAACTTGACATAAAAGTTTGGGAATATGAATTAAAAAGGGAGATACCATGTGTATCAACATTTTAGAATTCCAAAGCTTTTGAAAAACTCAAAACTCTCGAATTCGAAGCCGTTGATTTTGCTTGAGCTACTGCCGCCATTCACGTCTTCTGATCAGAAGCCTCAAAATGATTCTTACTTTAGAATTTAGGAAATTTCCGTATAACTTGTTTTTACTTTGAGCCAATTTAACTCGTTTCCTGTCAAAGGTAAGAAAAAGGAATCAACTAATAAATTGTTTATCATAATATCACCAACATTCTATTAGTTGTCAAATTCTAGATATCTTTGACAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTCACGGAGCCCTTCTATTACTATCTCAAATCTAGCTCCTTCTGAATTCTGCGTTT</canonical>
            <polymorphic>AGATTAATTCCTTGATAACCATTTGAATCCTAGCCTCAAGTTTCTAGAACTCTAGAACTCGAGCTTTTAGTTCTATTCTAGACTTGAAGAAATTAATCTCAAAAAAGTCTAGGATGGTTATTTGATAACCATCTAATACTCACTCTTATCATAAGTTCCCTTGCATCCCTTGAACACGAATCCAGGTTGGAACAATCCAGAAATCACATCCACATCCCCTGATTCCAATGACCTGATCATCCGAGCCAAGAACTTCTCGACGACCTGTTTAGCTGTATCCGAGGAAGGGGCGAAGACATTTCGAGTGAAGTAGAAGATATCATTAGGATGTCCTCCGAAAGAATCGGTTCCACGTAAATCTGGATCATCTGGGACGAAGGCCCAGGATGTTCCAGCTAGGAGACAGATGACAAGAATTGATGGGGACATTCGACTTGGAATGACATGAGGAGAGGCCGAGTCTTCCTTTTATGGGGAAGTATGCAAATCGAATTATTGCMTTTTTGCGAGCGTGGGCGGTGGGAATGGGAACGATGTTTAAAAATTTTTTTTCGCTTTTTTAGGCAATGAAATATCTTGAGAACTTGACATAAAAGTTTGGGAATATGAATTAAAAAGGGAGATACCATGTGTATCAACATTTTAGAATTCCAAAGCTTTTGAAAAACTCAAAACTCTCGAATTCGAAGCCGTTGATTTTGCTTGAGCTACTGCCGCCATTCACGTCTTCTGATCAGAAGCCTCAAAATGATTCTTACTTTAGAATTTAGGAAATTTCCGTATAACTTGTTTTTACTTTGAGCCAATTTAACTCGTTTCCTGTCAAAGGTAAGAAAAAGGAATCAACTAATAAATTGTTTATCATAATATCACCAACATTCTATTAGTTGTCAAATTCTAGATATCTTTGACAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTCACGGAGCCCTTCTATTACTATCTCAAATCTAGCTCCTTCTGAATTCTGCGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>502 320 163 15</canonical_bands>
                <polymorphic_bands>517 320 163</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGAATGACATGAGGAGAG</pcr_primer_p1>
		<pcr_primer_p2>AATTCGAGAGTTTTGAGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGGAATGACATGAGGAGAGGCCGAGTCTTCCTTTTATGGGGAAGTATGCAAATCGAATTATTGCATTTTTGCGAGCGTGGGCGGTGGGAATGGGAACGATGTTTAAAAATTTTTTTTCGCTTTTTTAGGCAATGAAATATCTTGAGAACTTGACATAAAAGTTTGGGAATATGAATTAAAAAGGGAGATACCATGTGTATCAACATTTTAGAATTCCAAAGCTTTTGAAAAACTCAAAACTCTCGAATT</canonical_amplicon>
		<polymorphic_amplicon>TTGGAATGACATGAGGAGAGGCCGAGTCTTCCTTTTATGGGGAAGTATGCAAATCGAATTATTGCMTTTTTGCGAGCGTGGGCGGTGGGAATGGGAACGATGTTTAAAAATTTTTTTTCGCTTTTTTAGGCAATGAAATATCTTGAGAACTTGACATAAAAGTTTGGGAATATGAATTAAAAAGGGAGATACCATGTGTATCAACATTTTAGAATTCCAAAGCTTTTGAAAAACTCAAAACTCTCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37332</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>146003</contig_pos>
        <strand>+</strand>
        <context>TGTTTAAAAA[A/G]TTTTTTTCGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGCATTTTTGCGAGCGTGGGCGGTGGGAATGGGAACGATGTTTAAAAA</left_flank>
        <right_flank>TTTTTTTCGCTTTTTTAGGCAATGAAATATCTTGAGAACTTGACATAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAACTCTAGAACTCGAGCTTTTAGTTCTATTCTAGACTTGAAGAAATTAATCTCAAAAAAGTCTAGGATGGTTATTTGATAACCATCTAATACTCACTCTTATCATAAGTTCCCTTGCATCCCTTGAACACGAATCCAGGTTGGAACAATCCAGAAATCACATCCACATCCCCTGATTCCAATGACCTGATCATCCGAGCCAAGAACTTCTCGACGACCTGTTTAGCTGTATCCGAGGAAGGGGCGAAGACATTTCGAGTGAAGTAGAAGATATCATTAGGATGTCCTCCGAAAGAATCGGTTCCACGTAAATCTGGATCATCTGGGACGAAGGCCCAGGATGTTCCAGCTAGGAGACAGATGACAAGAATTGATGGGGACATTCGACTTGGAATGACATGAGGAGAGGCCGAGTCTTCCTTTTATGGGGAAGTATGCAAATCGAATTATTGCATTTTTGCGAGCGTGGGCGGTGGGAATGGGAACGATGTTTAAAAATTTTTTTTCGCTTTTTTAGGCAATGAAATATCTTGAGAACTTGACATAAAAGTTTGGGAATATGAATTAAAAAGGGAGATACCATGTGTATCAACATTTTAGAATTCCAAAGCTTTTGAAAAACTCAAAACTCTCGAATTCGAAGCCGTTGATTTTGCTTGAGCTACTGCCGCCATTCACGTCTTCTGATCAGAAGCCTCAAAATGATTCTTACTTTAGAATTTAGGAAATTTCCGTATAACTTGTTTTTACTTTGAGCCAATTTAACTCGTTTCCTGTCAAAGGTAAGAAAAAGGAATCAACTAATAAATTGTTTATCATAATATCACCAACATTCTATTAGTTGTCAAATTCTAGATATCTTTGACAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTCACGGAGCCCTTCTATTACTATCTCAAATCTAGCTCCTTCTGAATTCTGCGTTTTCTAACTCGAAAAAATAAGAATCAGAATTTTATTTGATGGCCTAG</canonical>
            <polymorphic>AGAACTCTAGAACTCGAGCTTTTAGTTCTATTCTAGACTTGAAGAAATTAATCTCAAAAAAGTCTAGGATGGTTATTTGATAACCATCTAATACTCACTCTTATCATAAGTTCCCTTGCATCCCTTGAACACGAATCCAGGTTGGAACAATCCAGAAATCACATCCACATCCCCTGATTCCAATGACCTGATCATCCGAGCCAAGAACTTCTCGACGACCTGTTTAGCTGTATCCGAGGAAGGGGCGAAGACATTTCGAGTGAAGTAGAAGATATCATTAGGATGTCCTCCGAAAGAATCGGTTCCACGTAAATCTGGATCATCTGGGACGAAGGCCCAGGATGTTCCAGCTAGGAGACAGATGACAAGAATTGATGGGGACATTCGACTTGGAATGACATGAGGAGAGGCCGAGTCTTCCTTTTATGGGGAAGTATGCAAATCGAATTATTGCATTTTTGCGAGCGTGGGCGGTGGGAATGGGAACGATGTTTAAAAARTTTTTTTCGCTTTTTTAGGCAATGAAATATCTTGAGAACTTGACATAAAAGTTTGGGAATATGAATTAAAAAGGGAGATACCATGTGTATCAACATTTTAGAATTCCAAAGCTTTTGAAAAACTCAAAACTCTCGAATTCGAAGCCGTTGATTTTGCTTGAGCTACTGCCGCCATTCACGTCTTCTGATCAGAAGCCTCAAAATGATTCTTACTTTAGAATTTAGGAAATTTCCGTATAACTTGTTTTTACTTTGAGCCAATTTAACTCGTTTCCTGTCAAAGGTAAGAAAAAGGAATCAACTAATAAATTGTTTATCATAATATCACCAACATTCTATTAGTTGTCAAATTCTAGATATCTTTGACAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTCACGGAGCCCTTCTATTACTATCTCAAATCTAGCTCCTTCTGAATTCTGCGTTTTCTAACTCGAAAAAATAAGAATCAGAATTTTATTTGATGGCCTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>497 121 104 95 83 37 34 20 9</canonical_bands>
                <polymorphic_bands>601 121 95 83 37 34 20 9</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>324 83 76 66 63 52 48 45 41 38 37 34 32 32 20 9</canonical_bands>
                <polymorphic_bands>324 118 83 76 63 48 45 41 38 37 34 32 32 20 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGAATGACATGAGGAGAG</pcr_primer_p1>
		<pcr_primer_p2>AATTCGAGAGTTTTGAGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGGAATGACATGAGGAGAGGCCGAGTCTTCCTTTTATGGGGAAGTATGCAAATCGAATTATTGCATTTTTGCGAGCGTGGGCGGTGGGAATGGGAACGATGTTTAAAAATTTTTTTTCGCTTTTTTAGGCAATGAAATATCTTGAGAACTTGACATAAAAGTTTGGGAATATGAATTAAAAAGGGAGATACCATGTGTATCAACATTTTAGAATTCCAAAGCTTTTGAAAAACTCAAAACTCTCGAATT</canonical_amplicon>
		<polymorphic_amplicon>TTGGAATGACATGAGGAGAGGCCGAGTCTTCCTTTTATGGGGAAGTATGCAAATCGAATTATTGCATTTTTGCGAGCGTGGGCGGTGGGAATGGGAACGATGTTTAAAAARTTTTTTTCGCTTTTTTAGGCAATGAAATATCTTGAGAACTTGACATAAAAGTTTGGGAATATGAATTAAAAAGGGAGATACCATGTGTATCAACATTTTAGAATTCCAAAGCTTTTGAAAAACTCAAAACTCTCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37333</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>146045</contig_pos>
        <strand></strand>
        <context>TTGAGAACTT[G/A]ASATAAAART</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTAAAAATTTTTTTTCGCTTTTTTAGGCAATGAAATATCTTGAGAACTT</left_flank>
        <right_flank>ACATAAAAGTTTGGGAATATGAATTAAAAAGGGAGATACCATGTGTATCA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAATTAATCTCAAAAAAGTCTAGGATGGTTATTTGATAACCATCTAATACTCACTCTTATCATAAGTTCCCTTGCATCCCTTGAACACGAATCCAGGTTGGAACAATCCAGAAATCACATCCACATCCCCTGATTCCAATGACCTGATCATCCGAGCCAAGAACTTCTCGACGACCTGTTTAGCTGTATCCGAGGAAGGGGCGAAGACATTTCGAGTGAAGTAGAAGATATCATTAGGATGTCCTCCGAAAGAATCGGTTCCACGTAAATCTGGATCATCTGGGACGAAGGCCCAGGATGTTCCAGCTAGGAGACAGATGACAAGAATTGATGGGGACATTCGACTTGGAATGACATGAGGAGAGGCCGAGTCTTCCTTTTATGGGGAAGTATGCAAATCGAATTATTGCATTTTTGCGAGCGTGGGCGGTGGGAATGGGAACGATGTTTAAAAATTTTTTTTCGCTTTTTTAGGCAATGAAATATCTTGAGAACTTGACATAAAAGTTTGGGAATATGAATTAAAAAGGGAGATACCATGTGTATCAACATTTTAGAATTCCAAAGCTTTTGAAAAACTCAAAACTCTCGAATTCGAAGCCGTTGATTTTGCTTGAGCTACTGCCGCCATTCACGTCTTCTGATCAGAAGCCTCAAAATGATTCTTACTTTAGAATTTAGGAAATTTCCGTATAACTTGTTTTTACTTTGAGCCAATTTAACTCGTTTCCTGTCAAAGGTAAGAAAAAGGAATCAACTAATAAATTGTTTATCATAATATCACCAACATTCTATTAGTTGTCAAATTCTAGATATCTTTGACAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTCACGGAGCCCTTCTATTACTATCTCAAATCTAGCTCCTTCTGAATTCTGCGTTTTCTAACTCGAAAAAATAAGAATCAGAATTTTATTTGATGGCCTAGAAGTCTCCATGGTCGAGATTACGGGTTTCAAGGCCACTGTTA</canonical>
            <polymorphic>AGAAATTAATCTCAAAAAAGTCTAGGATGGTTATTTGATAACCATCTAATACTCACTCTTATCATAAGTTCCCTTGCATCCCTTGAACACGAATCCAGGTTGGAACAATCCAGAAATCACATCCACATCCCCTGATTCCAATGACCTGATCATCCGAGCCAAGAACTTCTCGACGACCTGTTTAGCTGTATCCGAGGAAGGGGCGAAGACATTTCGAGTGAAGTAGAAGATATCATTAGGATGTCCTCCGAAAGAATCGGTTCCACGTAAATCTGGATCATCTGGGACGAAGGCCCAGGATGTTCCAGCTAGGAGACAGATGACAAGAATTGATGGGGACATTCGACTTGGAATGACATGAGGAGAGGCCGAGTCTTCCTTTTATGGGGAAGTATGCAAATCGAATTATTGCATTTTTGCGAGCGTGGGCGGTGGGAATGGGAACGATGTTTAAAAATTTTTTTTCGCTTTTTTAGGCAATGAAATATCTTGAGAACTTRACATAAAAGTTTGGGAATATGAATTAAAAAGGGAGATACCATGTGTATCAACATTTTAGAATTCCAAAGCTTTTGAAAAACTCAAAACTCTCGAATTCGAAGCCGTTGATTTTGCTTGAGCTACTGCCGCCATTCACGTCTTCTGATCAGAAGCCTCAAAATGATTCTTACTTTAGAATTTAGGAAATTTCCGTATAACTTGTTTTTACTTTGAGCCAATTTAACTCGTTTCCTGTCAAAGGTAAGAAAAAGGAATCAACTAATAAATTGTTTATCATAATATCACCAACATTCTATTAGTTGTCAAATTCTAGATATCTTTGACAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTCACGGAGCCCTTCTATTACTATCTCAAATCTAGCTCCTTCTGAATTCTGCGTTTTCTAACTCGAAAAAATAAGAATCAGAATTTTATTTGATGGCCTAGAAGTCTCCATGGTCGAGATTACGGGTTTCAAGGCCACTGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGAATGACATGAGGAGAG</pcr_primer_p1>
		<pcr_primer_p2>AATTCGAGAGTTTTGAGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGGAATGACATGAGGAGAGGCCGAGTCTTCCTTTTATGGGGAAGTATGCAAATCGAATTATTGCATTTTTGCGAGCGTGGGCGGTGGGAATGGGAACGATGTTTAAAAATTTTTTTTCGCTTTTTTAGGCAATGAAATATCTTGAGAACTTGACATAAAAGTTTGGGAATATGAATTAAAAAGGGAGATACCATGTGTATCAACATTTTAGAATTCCAAAGCTTTTGAAAAACTCAAAACTCTCGAATT</canonical_amplicon>
		<polymorphic_amplicon>TTGGAATGACATGAGGAGAGGCCGAGTCTTCCTTTTATGGGGAAGTATGCAAATCGAATTATTGCATTTTTGCGAGCGTGGGCGGTGGGAATGGGAACGATGTTTAAAAATTTTTTTTCGCTTTTTTAGGCAATGAAATATCTTGAGAACTTRACATAAAAGTTTGGGAATATGAATTAAAAAGGGAGATACCATGTGTATCAACATTTTAGAATTCCAAAGCTTTTGAAAAACTCAAAACTCTCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37334</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>146047</contig_pos>
        <strand>+</strand>
        <context>GAGAACTTRA[C/G]ATAAAARTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAAAAATTTTTTTTCGCTTTTTTAGGCAATGAAATATCTTGAGAACTTGA</left_flank>
        <right_flank>ATAAAAGTTTGGGAATATGAATTAAAAAGGGAGATACCATGTGTATCAAC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTAATCTCAAAAAAGTCTAGGATGGTTATTTGATAACCATCTAATACTCACTCTTATCATAAGTTCCCTTGCATCCCTTGAACACGAATCCAGGTTGGAACAATCCAGAAATCACATCCACATCCCCTGATTCCAATGACCTGATCATCCGAGCCAAGAACTTCTCGACGACCTGTTTAGCTGTATCCGAGGAAGGGGCGAAGACATTTCGAGTGAAGTAGAAGATATCATTAGGATGTCCTCCGAAAGAATCGGTTCCACGTAAATCTGGATCATCTGGGACGAAGGCCCAGGATGTTCCAGCTAGGAGACAGATGACAAGAATTGATGGGGACATTCGACTTGGAATGACATGAGGAGAGGCCGAGTCTTCCTTTTATGGGGAAGTATGCAAATCGAATTATTGCATTTTTGCGAGCGTGGGCGGTGGGAATGGGAACGATGTTTAAAAATTTTTTTTCGCTTTTTTAGGCAATGAAATATCTTGAGAACTTGACATAAAAGTTTGGGAATATGAATTAAAAAGGGAGATACCATGTGTATCAACATTTTAGAATTCCAAAGCTTTTGAAAAACTCAAAACTCTCGAATTCGAAGCCGTTGATTTTGCTTGAGCTACTGCCGCCATTCACGTCTTCTGATCAGAAGCCTCAAAATGATTCTTACTTTAGAATTTAGGAAATTTCCGTATAACTTGTTTTTACTTTGAGCCAATTTAACTCGTTTCCTGTCAAAGGTAAGAAAAAGGAATCAACTAATAAATTGTTTATCATAATATCACCAACATTCTATTAGTTGTCAAATTCTAGATATCTTTGACAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTCACGGAGCCCTTCTATTACTATCTCAAATCTAGCTCCTTCTGAATTCTGCGTTTTCTAACTCGAAAAAATAAGAATCAGAATTTTATTTGATGGCCTAGAAGTCTCCATGGTCGAGATTACGGGTTTCAAGGCCACTGTTACC</canonical>
            <polymorphic>AAATTAATCTCAAAAAAGTCTAGGATGGTTATTTGATAACCATCTAATACTCACTCTTATCATAAGTTCCCTTGCATCCCTTGAACACGAATCCAGGTTGGAACAATCCAGAAATCACATCCACATCCCCTGATTCCAATGACCTGATCATCCGAGCCAAGAACTTCTCGACGACCTGTTTAGCTGTATCCGAGGAAGGGGCGAAGACATTTCGAGTGAAGTAGAAGATATCATTAGGATGTCCTCCGAAAGAATCGGTTCCACGTAAATCTGGATCATCTGGGACGAAGGCCCAGGATGTTCCAGCTAGGAGACAGATGACAAGAATTGATGGGGACATTCGACTTGGAATGACATGAGGAGAGGCCGAGTCTTCCTTTTATGGGGAAGTATGCAAATCGAATTATTGCATTTTTGCGAGCGTGGGCGGTGGGAATGGGAACGATGTTTAAAAATTTTTTTTCGCTTTTTTAGGCAATGAAATATCTTGAGAACTTGASATAAAAGTTTGGGAATATGAATTAAAAAGGGAGATACCATGTGTATCAACATTTTAGAATTCCAAAGCTTTTGAAAAACTCAAAACTCTCGAATTCGAAGCCGTTGATTTTGCTTGAGCTACTGCCGCCATTCACGTCTTCTGATCAGAAGCCTCAAAATGATTCTTACTTTAGAATTTAGGAAATTTCCGTATAACTTGTTTTTACTTTGAGCCAATTTAACTCGTTTCCTGTCAAAGGTAAGAAAAAGGAATCAACTAATAAATTGTTTATCATAATATCACCAACATTCTATTAGTTGTCAAATTCTAGATATCTTTGACAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTCACGGAGCCCTTCTATTACTATCTCAAATCTAGCTCCTTCTGAATTCTGCGTTTTCTAACTCGAAAAAATAAGAATCAGAATTTTATTTGATGGCCTAGAAGTCTCCATGGTCGAGATTACGGGTTTCAAGGCCACTGTTACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGAATGACATGAGGAGAG</pcr_primer_p1>
		<pcr_primer_p2>AATTCGAGAGTTTTGAGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGGAATGACATGAGGAGAGGCCGAGTCTTCCTTTTATGGGGAAGTATGCAAATCGAATTATTGCATTTTTGCGAGCGTGGGCGGTGGGAATGGGAACGATGTTTAAAAATTTTTTTTCGCTTTTTTAGGCAATGAAATATCTTGAGAACTTGACATAAAAGTTTGGGAATATGAATTAAAAAGGGAGATACCATGTGTATCAACATTTTAGAATTCCAAAGCTTTTGAAAAACTCAAAACTCTCGAATT</canonical_amplicon>
		<polymorphic_amplicon>TTGGAATGACATGAGGAGAGGCCGAGTCTTCCTTTTATGGGGAAGTATGCAAATCGAATTATTGCATTTTTGCGAGCGTGGGCGGTGGGAATGGGAACGATGTTTAAAAATTTTTTTTCGCTTTTTTAGGCAATGAAATATCTTGAGAACTTGASATAAAAGTTTGGGAATATGAATTAAAAAGGGAGATACCATGTGTATCAACATTTTAGAATTCCAAAGCTTTTGAAAAACTCAAAACTCTCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37335</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>146054</contig_pos>
        <strand>+</strand>
        <context>TRASATAAAA[A/G]TTTGGGAATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTTCGCTTTTTTAGGCAATGAAATATCTTGAGAACTTGACATAAAA</left_flank>
        <right_flank>TTTGGGAATATGAATTAAAAAGGGAGATACCATGTGTATCAACATTTTAG</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCAAAAAAGTCTAGGATGGTTATTTGATAACCATCTAATACTCACTCTTATCATAAGTTCCCTTGCATCCCTTGAACACGAATCCAGGTTGGAACAATCCAGAAATCACATCCACATCCCCTGATTCCAATGACCTGATCATCCGAGCCAAGAACTTCTCGACGACCTGTTTAGCTGTATCCGAGGAAGGGGCGAAGACATTTCGAGTGAAGTAGAAGATATCATTAGGATGTCCTCCGAAAGAATCGGTTCCACGTAAATCTGGATCATCTGGGACGAAGGCCCAGGATGTTCCAGCTAGGAGACAGATGACAAGAATTGATGGGGACATTCGACTTGGAATGACATGAGGAGAGGCCGAGTCTTCCTTTTATGGGGAAGTATGCAAATCGAATTATTGCATTTTTGCGAGCGTGGGCGGTGGGAATGGGAACGATGTTTAAAAATTTTTTTTCGCTTTTTTAGGCAATGAAATATCTTGAGAACTTGACATAAAAGTTTGGGAATATGAATTAAAAAGGGAGATACCATGTGTATCAACATTTTAGAATTCCAAAGCTTTTGAAAAACTCAAAACTCTCGAATTCGAAGCCGTTGATTTTGCTTGAGCTACTGCCGCCATTCACGTCTTCTGATCAGAAGCCTCAAAATGATTCTTACTTTAGAATTTAGGAAATTTCCGTATAACTTGTTTTTACTTTGAGCCAATTTAACTCGTTTCCTGTCAAAGGTAAGAAAAAGGAATCAACTAATAAATTGTTTATCATAATATCACCAACATTCTATTAGTTGTCAAATTCTAGATATCTTTGACAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTCACGGAGCCCTTCTATTACTATCTCAAATCTAGCTCCTTCTGAATTCTGCGTTTTCTAACTCGAAAAAATAAGAATCAGAATTTTATTTGATGGCCTAGAAGTCTCCATGGTCGAGATTACGGGTTTCAAGGCCACTGTTACCTTTGGAT</canonical>
            <polymorphic>TCTCAAAAAAGTCTAGGATGGTTATTTGATAACCATCTAATACTCACTCTTATCATAAGTTCCCTTGCATCCCTTGAACACGAATCCAGGTTGGAACAATCCAGAAATCACATCCACATCCCCTGATTCCAATGACCTGATCATCCGAGCCAAGAACTTCTCGACGACCTGTTTAGCTGTATCCGAGGAAGGGGCGAAGACATTTCGAGTGAAGTAGAAGATATCATTAGGATGTCCTCCGAAAGAATCGGTTCCACGTAAATCTGGATCATCTGGGACGAAGGCCCAGGATGTTCCAGCTAGGAGACAGATGACAAGAATTGATGGGGACATTCGACTTGGAATGACATGAGGAGAGGCCGAGTCTTCCTTTTATGGGGAAGTATGCAAATCGAATTATTGCATTTTTGCGAGCGTGGGCGGTGGGAATGGGAACGATGTTTAAAAATTTTTTTTCGCTTTTTTAGGCAATGAAATATCTTGAGAACTTGACATAAAARTTTGGGAATATGAATTAAAAAGGGAGATACCATGTGTATCAACATTTTAGAATTCCAAAGCTTTTGAAAAACTCAAAACTCTCGAATTCGAAGCCGTTGATTTTGCTTGAGCTACTGCCGCCATTCACGTCTTCTGATCAGAAGCCTCAAAATGATTCTTACTTTAGAATTTAGGAAATTTCCGTATAACTTGTTTTTACTTTGAGCCAATTTAACTCGTTTCCTGTCAAAGGTAAGAAAAAGGAATCAACTAATAAATTGTTTATCATAATATCACCAACATTCTATTAGTTGTCAAATTCTAGATATCTTTGACAGGAACCGAGATAAATTGGCTCAAAGTTGAAAGTCACGGAGCCCTTCTATTACTATCTCAAATCTAGCTCCTTCTGAATTCTGCGTTTTCTAACTCGAAAAAATAAGAATCAGAATTTTATTTGATGGCCTAGAAGTCTCCATGGTCGAGATTACGGGTTTCAAGGCCACTGTTACCTTTGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGGAATGACATGAGGAGAG</pcr_primer_p1>
		<pcr_primer_p2>AATTCGAGAGTTTTGAGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGGAATGACATGAGGAGAGGCCGAGTCTTCCTTTTATGGGGAAGTATGCAAATCGAATTATTGCATTTTTGCGAGCGTGGGCGGTGGGAATGGGAACGATGTTTAAAAATTTTTTTTCGCTTTTTTAGGCAATGAAATATCTTGAGAACTTGACATAAAAGTTTGGGAATATGAATTAAAAAGGGAGATACCATGTGTATCAACATTTTAGAATTCCAAAGCTTTTGAAAAACTCAAAACTCTCGAATT</canonical_amplicon>
		<polymorphic_amplicon>TTGGAATGACATGAGGAGAGGCCGAGTCTTCCTTTTATGGGGAAGTATGCAAATCGAATTATTGCATTTTTGCGAGCGTGGGCGGTGGGAATGGGAACGATGTTTAAAAATTTTTTTTCGCTTTTTTAGGCAATGAAATATCTTGAGAACTTGACATAAAARTTTGGGAATATGAATTAAAAAGGGAGATACCATGTGTATCAACATTTTAGAATTCCAAAGCTTTTGAAAAACTCAAAACTCTCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37336</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>148317</contig_pos>
        <strand></strand>
        <context>CAAAAGAAGG[T/C]RATAAAATAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGG</left_flank>
        <right_flank>GATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTAAAAAAGATATCAAAAAGTGGTTAACTAATAAAATATTCATCTTAAATTGCGAAATATTTTATCAGTGCTTTTTGACATCTCTTACAGTATCCGAGACATTTGTGCTCAATGTTGGCTGCCCGAGTGGTCTTCTATTAGAGTGTTTACGGTAATGGAGCTCAAACTTGAAAGCGTGTGGGCCCTTCTATTACAGGGTTTTCTGTCTATCAGTTTGTCCCGATGTCTCCTTACCCTCATCATCATCATTCTCCTCCTTCTTCTGCACAGATTCCTCAGCGGTACGTTTGCGTGGCTCCGTCGTGCTCTTCTCAGAAGATCCCTCCTCTGAAACAGGGCACTCAACGTCCGGCGAACGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAAGTACAGAAAATAGGAAAGAAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGGTTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTAGCGGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATCAACCGGAATACTAAACCGGGGTTATTGTACATTCTCATATCTCAGATAGGGAAAACTAGATTACTGTAACTATGAAAT</canonical>
            <polymorphic>TTTCTAAAAAAGATATCAAAAAGTGGTTAACTAATAAAATATTCATCTTAAATTGCGAAATATTTTATCAGTGCTTTTTGACATCTCTTACAGTATCCGAGACATTTGTGCTCAATGTTGGCTGCCCGAGTGGTCTTCTATTAGAGTGTTTACGGTAATGGAGCTCAAACTTGAAAGCGTGTGGGCCCTTCTATTACAGGGTTTTCTGTCTATCAGTTTGTCCCGATGTCTCCTTACCCTCATCATCATCATTCTCCTCCTTCTTCTGCACAGATTCCTCAGCGGTACGTTTGCGTGGCTCCGTCGTGCTCTTCTCAGAAGATCCCTCCTCTGAAACAGGGCACTCAACGTCCGGCGAACGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGYGATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAAGTACAGAAAATAGGAAAGAAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGGTTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTAGCGGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATCAACCGGAATACTAAACCGGGGTTATTGTACATTCTCATATCTCAGATAGGGAAAACTAGATTACTGTAACTATGAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>255 135 111 87 48 43 37 36 35 33 28 27 25 22 20 16 15 11 11 3 2</canonical_bands>
                <polymorphic_bands>255 150 111 87 48 43 37 36 35 33 28 27 25 22 20 16 11 11 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATCCCTCCTCTGAAACAG</pcr_primer_p1>
		<pcr_primer_p2>TTTATTTGTAAATGAAGCGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGATCCCTCCTCTGAAACAGGGCACTCAACGTCCGGCGAACGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAA</canonical_amplicon>
		<polymorphic_amplicon>AGATCCCTCCTCTGAAACAGGGCACTCAACGTCCGGCGAACGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGYGATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37337</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>148318</contig_pos>
        <strand></strand>
        <context>AAAAGAAGGY[G/A]ATAAAATAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGT</left_flank>
        <right_flank>ATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTAAAAAAGATATCAAAAAGTGGTTAACTAATAAAATATTCATCTTAAATTGCGAAATATTTTATCAGTGCTTTTTGACATCTCTTACAGTATCCGAGACATTTGTGCTCAATGTTGGCTGCCCGAGTGGTCTTCTATTAGAGTGTTTACGGTAATGGAGCTCAAACTTGAAAGCGTGTGGGCCCTTCTATTACAGGGTTTTCTGTCTATCAGTTTGTCCCGATGTCTCCTTACCCTCATCATCATCATTCTCCTCCTTCTTCTGCACAGATTCCTCAGCGGTACGTTTGCGTGGCTCCGTCGTGCTCTTCTCAGAAGATCCCTCCTCTGAAACAGGGCACTCAACGTCCGGCGAACGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAAGTACAGAAAATAGGAAAGAAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGGTTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTAGCGGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATCAACCGGAATACTAAACCGGGGTTATTGTACATTCTCATATCTCAGATAGGGAAAACTAGATTACTGTAACTATGAAATG</canonical>
            <polymorphic>TTCTAAAAAAGATATCAAAAAGTGGTTAACTAATAAAATATTCATCTTAAATTGCGAAATATTTTATCAGTGCTTTTTGACATCTCTTACAGTATCCGAGACATTTGTGCTCAATGTTGGCTGCCCGAGTGGTCTTCTATTAGAGTGTTTACGGTAATGGAGCTCAAACTTGAAAGCGTGTGGGCCCTTCTATTACAGGGTTTTCTGTCTATCAGTTTGTCCCGATGTCTCCTTACCCTCATCATCATCATTCTCCTCCTTCTTCTGCACAGATTCCTCAGCGGTACGTTTGCGTGGCTCCGTCGTGCTCTTCTCAGAAGATCCCTCCTCTGAAACAGGGCACTCAACGTCCGGCGAACGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTRATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAAGTACAGAAAATAGGAAAGAAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGGTTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTAGCGGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATCAACCGGAATACTAAACCGGGGTTATTGTACATTCTCATATCTCAGATAGGGAAAACTAGATTACTGTAACTATGAAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>255 135 112 87 48 43 37 36 35 33 28 27 24 22 20 16 15 11 11 3 2</canonical_bands>
                <polymorphic_bands>255 150 112 87 48 43 37 36 35 33 28 27 24 22 20 16 11 11 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATCCCTCCTCTGAAACAG</pcr_primer_p1>
		<pcr_primer_p2>TTTATTTGTAAATGAAGCGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGATCCCTCCTCTGAAACAGGGCACTCAACGTCCGGCGAACGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAA</canonical_amplicon>
		<polymorphic_amplicon>AGATCCCTCCTCTGAAACAGGGCACTCAACGTCCGGCGAACGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTRATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37338</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>148330</contig_pos>
        <strand>+</strand>
        <context>TAAAATAGAA[C/T]RCACTCCTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAA</left_flank>
        <right_flank>ACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCAAAAAGTGGTTAACTAATAAAATATTCATCTTAAATTGCGAAATATTTTATCAGTGCTTTTTGACATCTCTTACAGTATCCGAGACATTTGTGCTCAATGTTGGCTGCCCGAGTGGTCTTCTATTAGAGTGTTTACGGTAATGGAGCTCAAACTTGAAAGCGTGTGGGCCCTTCTATTACAGGGTTTTCTGTCTATCAGTTTGTCCCGATGTCTCCTTACCCTCATCATCATCATTCTCCTCCTTCTTCTGCACAGATTCCTCAGCGGTACGTTTGCGTGGCTCCGTCGTGCTCTTCTCAGAAGATCCCTCCTCTGAAACAGGGCACTCAACGTCCGGCGAACGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAAGTACAGAAAATAGGAAAGAAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGGTTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTAGCGGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATCAACCGGAATACTAAACCGGGGTTATTGTACATTCTCATATCTCAGATAGGGAAAACTAGATTACTGTAACTATGAAATGATACTACTGTAG</canonical>
            <polymorphic>TATCAAAAAGTGGTTAACTAATAAAATATTCATCTTAAATTGCGAAATATTTTATCAGTGCTTTTTGACATCTCTTACAGTATCCGAGACATTTGTGCTCAATGTTGGCTGCCCGAGTGGTCTTCTATTAGAGTGTTTACGGTAATGGAGCTCAAACTTGAAAGCGTGTGGGCCCTTCTATTACAGGGTTTTCTGTCTATCAGTTTGTCCCGATGTCTCCTTACCCTCATCATCATCATTCTCCTCCTTCTTCTGCACAGATTCCTCAGCGGTACGTTTGCGTGGCTCCGTCGTGCTCTTCTCAGAAGATCCCTCCTCTGAAACAGGGCACTCAACGTCCGGCGAACGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAYACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAAGTACAGAAAATAGGAAAGAAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGGTTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTAGCGGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATCAACCGGAATACTAAACCGGGGTTATTGTACATTCTCATATCTCAGATAGGGAAAACTAGATTACTGTAACTATGAAATGATACTACTGTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATCCCTCCTCTGAAACAG</pcr_primer_p1>
		<pcr_primer_p2>TTTATTTGTAAATGAAGCGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGATCCCTCCTCTGAAACAGGGCACTCAACGTCCGGCGAACGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAA</canonical_amplicon>
		<polymorphic_amplicon>AGATCCCTCCTCTGAAACAGGGCACTCAACGTCCGGCGAACGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAYACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37339</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>148331</contig_pos>
        <strand>+</strand>
        <context>AAAATAGAAY[A/G]CACTCCTCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAA</left_flank>
        <right_flank>CACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAAAAAGTGGTTAACTAATAAAATATTCATCTTAAATTGCGAAATATTTTATCAGTGCTTTTTGACATCTCTTACAGTATCCGAGACATTTGTGCTCAATGTTGGCTGCCCGAGTGGTCTTCTATTAGAGTGTTTACGGTAATGGAGCTCAAACTTGAAAGCGTGTGGGCCCTTCTATTACAGGGTTTTCTGTCTATCAGTTTGTCCCGATGTCTCCTTACCCTCATCATCATCATTCTCCTCCTTCTTCTGCACAGATTCCTCAGCGGTACGTTTGCGTGGCTCCGTCGTGCTCTTCTCAGAAGATCCCTCCTCTGAAACAGGGCACTCAACGTCCGGCGAACGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAAGTACAGAAAATAGGAAAGAAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGGTTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTAGCGGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATCAACCGGAATACTAAACCGGGGTTATTGTACATTCTCATATCTCAGATAGGGAAAACTAGATTACTGTAACTATGAAATGATACTACTGTAGG</canonical>
            <polymorphic>ATCAAAAAGTGGTTAACTAATAAAATATTCATCTTAAATTGCGAAATATTTTATCAGTGCTTTTTGACATCTCTTACAGTATCCGAGACATTTGTGCTCAATGTTGGCTGCCCGAGTGGTCTTCTATTAGAGTGTTTACGGTAATGGAGCTCAAACTTGAAAGCGTGTGGGCCCTTCTATTACAGGGTTTTCTGTCTATCAGTTTGTCCCGATGTCTCCTTACCCTCATCATCATCATTCTCCTCCTTCTTCTGCACAGATTCCTCAGCGGTACGTTTGCGTGGCTCCGTCGTGCTCTTCTCAGAAGATCCCTCCTCTGAAACAGGGCACTCAACGTCCGGCGAACGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAARCACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAAGTACAGAAAATAGGAAAGAAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGGTTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTAGCGGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATCAACCGGAATACTAAACCGGGGTTATTGTACATTCTCATATCTCAGATAGGGAAAACTAGATTACTGTAACTATGAAATGATACTACTGTAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATCCCTCCTCTGAAACAG</pcr_primer_p1>
		<pcr_primer_p2>TTTATTTGTAAATGAAGCGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGATCCCTCCTCTGAAACAGGGCACTCAACGTCCGGCGAACGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAA</canonical_amplicon>
		<polymorphic_amplicon>AGATCCCTCCTCTGAAACAGGGCACTCAACGTCCGGCGAACGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAARCACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37340</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>148452</contig_pos>
        <strand>+</strand>
        <context>GAATCGGGGG[A/G]TTTTGGATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAGAAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGG</left_flank>
        <right_flank>TTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTAGCGGAAAAGAAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTATTAGAGTGTTTACGGTAATGGAGCTCAAACTTGAAAGCGTGTGGGCCCTTCTATTACAGGGTTTTCTGTCTATCAGTTTGTCCCGATGTCTCCTTACCCTCATCATCATCATTCTCCTCCTTCTTCTGCACAGATTCCTCAGCGGTACGTTTGCGTGGCTCCGTCGTGCTCTTCTCAGAAGATCCCTCCTCTGAAACAGGGCACTCAACGTCCGGCGAACGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAAGTACAGAAAATAGGAAAGAAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGGTTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTAGCGGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATCAACCGGAATACTAAACCGGGGTTATTGTACATTCTCATATCTCAGATAGGGAAAACTAGATTACTGTAACTATGAAATGATACTACTGTAGGATTTTAAAATTAGGATGGGGCCGATGAAGCGCACGAATGCAAAAATCTTCCACAGGGATTCAATCAGGAGAGGGGAGTGAAAAAGAAGTGGATTACGGTAGTTACAGTATTTACAAAATCA</canonical>
            <polymorphic>TTCTATTAGAGTGTTTACGGTAATGGAGCTCAAACTTGAAAGCGTGTGGGCCCTTCTATTACAGGGTTTTCTGTCTATCAGTTTGTCCCGATGTCTCCTTACCCTCATCATCATCATTCTCCTCCTTCTTCTGCACAGATTCCTCAGCGGTACGTTTGCGTGGCTCCGTCGTGCTCTTCTCAGAAGATCCCTCCTCTGAAACAGGGCACTCAACGTCCGGCGAACGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAAGTACAGAAAATAGGAAAGAAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGGRTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTAGCGGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATCAACCGGAATACTAAACCGGGGTTATTGTACATTCTCATATCTCAGATAGGGAAAACTAGATTACTGTAACTATGAAATGATACTACTGTAGGATTTTAAAATTAGGATGGGGCCGATGAAGCGCACGAATGCAAAAATCTTCCACAGGGATTCAATCAGGAGAGGGGAGTGAAAAAGAAGTGGATTACGGTAGTTACAGTATTTACAAAATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAAATTGGATTAAAATTGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGCTTGTAAATTCTGCTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>GTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAAGTACAGAAAATAGGAAAGAAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGGTTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTAGCGGAAAAGAAGCAGAATTTACAAGCA</canonical_amplicon>
		<polymorphic_amplicon>GTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAAGTACAGAAAATAGGAAAGAAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGGRTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTAGCGGAAAAGAAGCAGAATTTACAAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37341</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>148490</contig_pos>
        <strand></strand>
        <context>AGGGACCGTA[G/A]CGGAAAAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAGAATCGGGGGTTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTA</left_flank>
        <right_flank>CGGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGCGTGTGGGCCCTTCTATTACAGGGTTTTCTGTCTATCAGTTTGTCCCGATGTCTCCTTACCCTCATCATCATCATTCTCCTCCTTCTTCTGCACAGATTCCTCAGCGGTACGTTTGCGTGGCTCCGTCGTGCTCTTCTCAGAAGATCCCTCCTCTGAAACAGGGCACTCAACGTCCGGCGAACGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAAGTACAGAAAATAGGAAAGAAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGGTTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTAGCGGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATCAACCGGAATACTAAACCGGGGTTATTGTACATTCTCATATCTCAGATAGGGAAAACTAGATTACTGTAACTATGAAATGATACTACTGTAGGATTTTAAAATTAGGATGGGGCCGATGAAGCGCACGAATGCAAAAATCTTCCACAGGGATTCAATCAGGAGAGGGGAGTGAAAAAGAAGTGGATTACGGTAGTTACAGTATTTACAAAATCAAAATCACCAGGTGAATAAATTTTGGTACATTGGAAATG</canonical>
            <polymorphic>AAAGCGTGTGGGCCCTTCTATTACAGGGTTTTCTGTCTATCAGTTTGTCCCGATGTCTCCTTACCCTCATCATCATCATTCTCCTCCTTCTTCTGCACAGATTCCTCAGCGGTACGTTTGCGTGGCTCCGTCGTGCTCTTCTCAGAAGATCCCTCCTCTGAAACAGGGCACTCAACGTCCGGCGAACGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAAGTACAGAAAATAGGAAAGAAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGGTTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTARCGGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATCAACCGGAATACTAAACCGGGGTTATTGTACATTCTCATATCTCAGATAGGGAAAACTAGATTACTGTAACTATGAAATGATACTACTGTAGGATTTTAAAATTAGGATGGGGCCGATGAAGCGCACGAATGCAAAAATCTTCCACAGGGATTCAATCAGGAGAGGGGAGTGAAAAAGAAGTGGATTACGGTAGTTACAGTATTTACAAAATCAAAATCACCAGGTGAATAAATTTTGGTACATTGGAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTAGTAGGGACGGTTCTA</pcr_primer_p1>
		<pcr_primer_p2>GGTTTCTACAGTAACCCAGACTA</pcr_primer_p2>
		<pcr_amplicon_size>295</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGGTTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTAGCGGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGGTTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTARCGGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37342</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>148535</contig_pos>
        <strand>+</strand>
        <context>GCGGAGATGG[A/G]AAAAAAGGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGTAGCGGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGG</left_flank>
        <right_flank>AAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCCCGATGTCTCCTTACCCTCATCATCATCATTCTCCTCCTTCTTCTGCACAGATTCCTCAGCGGTACGTTTGCGTGGCTCCGTCGTGCTCTTCTCAGAAGATCCCTCCTCTGAAACAGGGCACTCAACGTCCGGCGAACGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAAGTACAGAAAATAGGAAAGAAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGGTTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTAGCGGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATCAACCGGAATACTAAACCGGGGTTATTGTACATTCTCATATCTCAGATAGGGAAAACTAGATTACTGTAACTATGAAATGATACTACTGTAGGATTTTAAAATTAGGATGGGGCCGATGAAGCGCACGAATGCAAAAATCTTCCACAGGGATTCAATCAGGAGAGGGGAGTGAAAAAGAAGTGGATTACGGTAGTTACAGTATTTACAAAATCAAAATCACCAGGTGAATAAATTTTGGTACATTGGAAATGGGTTACTGTATATAGAGTGGTCTGGAACTAATCCAAATCCAAATT</canonical>
            <polymorphic>TGTCCCGATGTCTCCTTACCCTCATCATCATCATTCTCCTCCTTCTTCTGCACAGATTCCTCAGCGGTACGTTTGCGTGGCTCCGTCGTGCTCTTCTCAGAAGATCCCTCCTCTGAAACAGGGCACTCAACGTCCGGCGAACGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAAGTACAGAAAATAGGAAAGAAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGGTTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTAGCGGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGRAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATCAACCGGAATACTAAACCGGGGTTATTGTACATTCTCATATCTCAGATAGGGAAAACTAGATTACTGTAACTATGAAATGATACTACTGTAGGATTTTAAAATTAGGATGGGGCCGATGAAGCGCACGAATGCAAAAATCTTCCACAGGGATTCAATCAGGAGAGGGGAGTGAAAAAGAAGTGGATTACGGTAGTTACAGTATTTACAAAATCAAAATCACCAGGTGAATAAATTTTGGTACATTGGAAATGGGTTACTGTATATAGAGTGGTCTGGAACTAATCCAAATCCAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTAGTAGGGACGGTTCTA</pcr_primer_p1>
		<pcr_primer_p2>GGTTTCTACAGTAACCCAGACTA</pcr_primer_p2>
		<pcr_amplicon_size>295</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGGTTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTAGCGGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACC</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGGTTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTAGCGGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGRAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37343</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>148570</contig_pos>
        <strand>+</strand>
        <context>GAGGCCTTAT[C/T]AGATGGGAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTAT</left_flank>
        <right_flank>AGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCTCCTTCTTCTGCACAGATTCCTCAGCGGTACGTTTGCGTGGCTCCGTCGTGCTCTTCTCAGAAGATCCCTCCTCTGAAACAGGGCACTCAACGTCCGGCGAACGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAAGTACAGAAAATAGGAAAGAAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGGTTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTAGCGGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATCAACCGGAATACTAAACCGGGGTTATTGTACATTCTCATATCTCAGATAGGGAAAACTAGATTACTGTAACTATGAAATGATACTACTGTAGGATTTTAAAATTAGGATGGGGCCGATGAAGCGCACGAATGCAAAAATCTTCCACAGGGATTCAATCAGGAGAGGGGAGTGAAAAAGAAGTGGATTACGGTAGTTACAGTATTTACAAAATCAAAATCACCAGGTGAATAAATTTTGGTACATTGGAAATGGGTTACTGTATATAGAGTGGTCTGGAACTAATCCAAATCCAAATTCATTCGATTGTGAAGACTATCAACGATGGTTTTCA</canonical>
            <polymorphic>CTCCTCCTTCTTCTGCACAGATTCCTCAGCGGTACGTTTGCGTGGCTCCGTCGTGCTCTTCTCAGAAGATCCCTCCTCTGAAACAGGGCACTCAACGTCCGGCGAACGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAAGTACAGAAAATAGGAAAGAAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGGTTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTAGCGGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATYAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATCAACCGGAATACTAAACCGGGGTTATTGTACATTCTCATATCTCAGATAGGGAAAACTAGATTACTGTAACTATGAAATGATACTACTGTAGGATTTTAAAATTAGGATGGGGCCGATGAAGCGCACGAATGCAAAAATCTTCCACAGGGATTCAATCAGGAGAGGGGAGTGAAAAAGAAGTGGATTACGGTAGTTACAGTATTTACAAAATCAAAATCACCAGGTGAATAAATTTTGGTACATTGGAAATGGGTTACTGTATATAGAGTGGTCTGGAACTAATCCAAATCCAAATTCATTCGATTGTGAAGACTATCAACGATGGTTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAAGAAGCAGAATTTACAA</pcr_primer_p1>
		<pcr_primer_p2>GATTCGAAAGTCTTTAGGACTAGAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATC</canonical_amplicon>
		<polymorphic_amplicon>GGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATYAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37344</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>148603</contig_pos>
        <strand>+</strand>
        <context>CAAAGTGAGG[A/G]AAAAAAGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGG</left_flank>
        <right_flank>AAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGTTTGCGTGGCTCCGTCGTGCTCTTCTCAGAAGATCCCTCCTCTGAAACAGGGCACTCAACGTCCGGCGAACGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAAGTACAGAAAATAGGAAAGAAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGGTTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTAGCGGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATCAACCGGAATACTAAACCGGGGTTATTGTACATTCTCATATCTCAGATAGGGAAAACTAGATTACTGTAACTATGAAATGATACTACTGTAGGATTTTAAAATTAGGATGGGGCCGATGAAGCGCACGAATGCAAAAATCTTCCACAGGGATTCAATCAGGAGAGGGGAGTGAAAAAGAAGTGGATTACGGTAGTTACAGTATTTACAAAATCAAAATCACCAGGTGAATAAATTTTGGTACATTGGAAATGGGTTACTGTATATAGAGTGGTCTGGAACTAATCCAAATCCAAATTCATTCGATTGTGAAGACTATCAACGATGGTTTTCATGTCGAATTGCTCCAGATCCGAGTCATCAGAAG</canonical>
            <polymorphic>ACGTTTGCGTGGCTCCGTCGTGCTCTTCTCAGAAGATCCCTCCTCTGAAACAGGGCACTCAACGTCCGGCGAACGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAAGTACAGAAAATAGGAAAGAAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGGTTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTAGCGGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGRAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATCAACCGGAATACTAAACCGGGGTTATTGTACATTCTCATATCTCAGATAGGGAAAACTAGATTACTGTAACTATGAAATGATACTACTGTAGGATTTTAAAATTAGGATGGGGCCGATGAAGCGCACGAATGCAAAAATCTTCCACAGGGATTCAATCAGGAGAGGGGAGTGAAAAAGAAGTGGATTACGGTAGTTACAGTATTTACAAAATCAAAATCACCAGGTGAATAAATTTTGGTACATTGGAAATGGGTTACTGTATATAGAGTGGTCTGGAACTAATCCAAATCCAAATTCATTCGATTGTGAAGACTATCAACGATGGTTTTCATGTCGAATTGCTCCAGATCCGAGTCATCAGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAAGAAGCAGAATTTACAA</pcr_primer_p1>
		<pcr_primer_p2>GATTCGAAAGTCTTTAGGACTAGAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATC</canonical_amplicon>
		<polymorphic_amplicon>GGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGRAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37345</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>148640</contig_pos>
        <strand></strand>
        <context>AAGAAAGCTT[C/T]YACCYGGGGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTT</left_flank>
        <right_flank>CACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCTCCTCTGAAACAGGGCACTCAACGTCCGGCGAACGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAAGTACAGAAAATAGGAAAGAAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGGTTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTAGCGGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATCAACCGGAATACTAAACCGGGGTTATTGTACATTCTCATATCTCAGATAGGGAAAACTAGATTACTGTAACTATGAAATGATACTACTGTAGGATTTTAAAATTAGGATGGGGCCGATGAAGCGCACGAATGCAAAAATCTTCCACAGGGATTCAATCAGGAGAGGGGAGTGAAAAAGAAGTGGATTACGGTAGTTACAGTATTTACAAAATCAAAATCACCAGGTGAATAAATTTTGGTACATTGGAAATGGGTTACTGTATATAGAGTGGTCTGGAACTAATCCAAATCCAAATTCATTCGATTGTGAAGACTATCAACGATGGTTTTCATGTCGAATTGCTCCAGATCCGAGTCATCAGAAGATTCTTCTTCATCTGAGATGTCAGAATCCTCACTTGA</canonical>
            <polymorphic>CCCTCCTCTGAAACAGGGCACTCAACGTCCGGCGAACGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAAGTACAGAAAATAGGAAAGAAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGGTTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTAGCGGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTYCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATCAACCGGAATACTAAACCGGGGTTATTGTACATTCTCATATCTCAGATAGGGAAAACTAGATTACTGTAACTATGAAATGATACTACTGTAGGATTTTAAAATTAGGATGGGGCCGATGAAGCGCACGAATGCAAAAATCTTCCACAGGGATTCAATCAGGAGAGGGGAGTGAAAAAGAAGTGGATTACGGTAGTTACAGTATTTACAAAATCAAAATCACCAGGTGAATAAATTTTGGTACATTGGAAATGGGTTACTGTATATAGAGTGGTCTGGAACTAATCCAAATCCAAATTCATTCGATTGTGAAGACTATCAACGATGGTTTTCATGTCGAATTGCTCCAGATCCGAGTCATCAGAAGATTCTTCTTCATCTGAGATGTCAGAATCCTCACTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>509 491</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAAAGAAGCAGAATTTACAA</pcr_primer_p1>
		<pcr_primer_p2>GATTCGAAAGTCTTTAGGACTAGAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATC</canonical_amplicon>
		<polymorphic_amplicon>GGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTYCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37346</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>148641</contig_pos>
        <strand>+</strand>
        <context>AGAAAGCTTY[C/T]ACCYGGGGGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTC</left_flank>
        <right_flank>ACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTCCTCTGAAACAGGGCACTCAACGTCCGGCGAACGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAAGTACAGAAAATAGGAAAGAAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGGTTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTAGCGGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATCAACCGGAATACTAAACCGGGGTTATTGTACATTCTCATATCTCAGATAGGGAAAACTAGATTACTGTAACTATGAAATGATACTACTGTAGGATTTTAAAATTAGGATGGGGCCGATGAAGCGCACGAATGCAAAAATCTTCCACAGGGATTCAATCAGGAGAGGGGAGTGAAAAAGAAGTGGATTACGGTAGTTACAGTATTTACAAAATCAAAATCACCAGGTGAATAAATTTTGGTACATTGGAAATGGGTTACTGTATATAGAGTGGTCTGGAACTAATCCAAATCCAAATTCATTCGATTGTGAAGACTATCAACGATGGTTTTCATGTCGAATTGCTCCAGATCCGAGTCATCAGAAGATTCTTCTTCATCTGAGATGTCAGAATCCTCACTTGAT</canonical>
            <polymorphic>CCTCCTCTGAAACAGGGCACTCAACGTCCGGCGAACGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAAGTACAGAAAATAGGAAAGAAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGGTTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTAGCGGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCYACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATCAACCGGAATACTAAACCGGGGTTATTGTACATTCTCATATCTCAGATAGGGAAAACTAGATTACTGTAACTATGAAATGATACTACTGTAGGATTTTAAAATTAGGATGGGGCCGATGAAGCGCACGAATGCAAAAATCTTCCACAGGGATTCAATCAGGAGAGGGGAGTGAAAAAGAAGTGGATTACGGTAGTTACAGTATTTACAAAATCAAAATCACCAGGTGAATAAATTTTGGTACATTGGAAATGGGTTACTGTATATAGAGTGGTCTGGAACTAATCCAAATCCAAATTCATTCGATTGTGAAGACTATCAACGATGGTTTTCATGTCGAATTGCTCCAGATCCGAGTCATCAGAAGATTCTTCTTCATCTGAGATGTCAGAATCCTCACTTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>508 492</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>255 158 135 88 44 43 38 37 36 28 27 20 19 19 15 11 11 7 6 3</canonical_bands>
                <polymorphic_bands>255 158 135 88 71 44 38 37 36 27 20 19 19 15 11 11 7 6 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAAAGAAGCAGAATTTACAA</pcr_primer_p1>
		<pcr_primer_p2>GATTCGAAAGTCTTTAGGACTAGAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATC</canonical_amplicon>
		<polymorphic_amplicon>GGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCYACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37347</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>148645</contig_pos>
        <strand>+</strand>
        <context>AGCTTYYACC[C/T]GGGGGGGGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACC</left_flank>
        <right_flank>GGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTGAAACAGGGCACTCAACGTCCGGCGAACGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAAGTACAGAAAATAGGAAAGAAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGGTTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTAGCGGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATCAACCGGAATACTAAACCGGGGTTATTGTACATTCTCATATCTCAGATAGGGAAAACTAGATTACTGTAACTATGAAATGATACTACTGTAGGATTTTAAAATTAGGATGGGGCCGATGAAGCGCACGAATGCAAAAATCTTCCACAGGGATTCAATCAGGAGAGGGGAGTGAAAAAGAAGTGGATTACGGTAGTTACAGTATTTACAAAATCAAAATCACCAGGTGAATAAATTTTGGTACATTGGAAATGGGTTACTGTATATAGAGTGGTCTGGAACTAATCCAAATCCAAATTCATTCGATTGTGAAGACTATCAACGATGGTTTTCATGTCGAATTGCTCCAGATCCGAGTCATCAGAAGATTCTTCTTCATCTGAGATGTCAGAATCCTCACTTGATCCTT</canonical>
            <polymorphic>CTCTGAAACAGGGCACTCAACGTCCGGCGAACGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAAGTACAGAAAATAGGAAAGAAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGGTTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTAGCGGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCYGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATCAACCGGAATACTAAACCGGGGTTATTGTACATTCTCATATCTCAGATAGGGAAAACTAGATTACTGTAACTATGAAATGATACTACTGTAGGATTTTAAAATTAGGATGGGGCCGATGAAGCGCACGAATGCAAAAATCTTCCACAGGGATTCAATCAGGAGAGGGGAGTGAAAAAGAAGTGGATTACGGTAGTTACAGTATTTACAAAATCAAAATCACCAGGTGAATAAATTTTGGTACATTGGAAATGGGTTACTGTATATAGAGTGGTCTGGAACTAATCCAAATCCAAATTCATTCGATTGTGAAGACTATCAACGATGGTTTTCATGTCGAATTGCTCCAGATCCGAGTCATCAGAAGATTCTTCTTCATCTGAGATGTCAGAATCCTCACTTGATCCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>499 389 112</canonical_bands>
                <polymorphic_bands>611 389</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>474 390 99 24 13</canonical_bands>
                <polymorphic_bands>573 390 24 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAAAGAAGCAGAATTTACAA</pcr_primer_p1>
		<pcr_primer_p2>GATTCGAAAGTCTTTAGGACTAGAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATC</canonical_amplicon>
		<polymorphic_amplicon>GGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCYGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37348</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>148676</contig_pos>
        <strand></strand>
        <context>GGTCACTAGG[T/C]ATTAGTCTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGG</left_flank>
        <right_flank>ATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAAGTACAGAAAATAGGAAAGAAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGGTTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTAGCGGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATCAACCGGAATACTAAACCGGGGTTATTGTACATTCTCATATCTCAGATAGGGAAAACTAGATTACTGTAACTATGAAATGATACTACTGTAGGATTTTAAAATTAGGATGGGGCCGATGAAGCGCACGAATGCAAAAATCTTCCACAGGGATTCAATCAGGAGAGGGGAGTGAAAAAGAAGTGGATTACGGTAGTTACAGTATTTACAAAATCAAAATCACCAGGTGAATAAATTTTGGTACATTGGAAATGGGTTACTGTATATAGAGTGGTCTGGAACTAATCCAAATCCAAATTCATTCGATTGTGAAGACTATCAACGATGGTTTTCATGTCGAATTGCTCCAGATCCGAGTCATCAGAAGATTCTTCTTCATCTGAGATGTCAGAATCCTCACTTGATCCTTCTTCTTCTTCTTCTTCTTCTGGATCACTCGA</canonical>
            <polymorphic>CGTGGTGGCGAGTCTTCTGGGACATCGACGATCTCGGACATTGCTCAGTTTTCGGTTTGAGTTACTGTAAATTGGATTAAAATTGGAAAAAATAAAGAAATTGAAAAAATATAACAGAGTTGTAAAAACTCAAAAGAAGGTGATAAAATAGAAAACACTCCTCATGTGAGGTCTGATTTTCCCAATTTTAAAACGCTTCATTTACAAATAAAGTACAGAAAATAGGAAAGAAAAACTAGTAGGGACGGTTCTAGAAGACGTTTTAGAATCGGGGGTTTTTGGATTTTTTTTGGATGATTGGTCAGGGACCGTAGCGGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGYATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATCAACCGGAATACTAAACCGGGGTTATTGTACATTCTCATATCTCAGATAGGGAAAACTAGATTACTGTAACTATGAAATGATACTACTGTAGGATTTTAAAATTAGGATGGGGCCGATGAAGCGCACGAATGCAAAAATCTTCCACAGGGATTCAATCAGGAGAGGGGAGTGAAAAAGAAGTGGATTACGGTAGTTACAGTATTTACAAAATCAAAATCACCAGGTGAATAAATTTTGGTACATTGGAAATGGGTTACTGTATATAGAGTGGTCTGGAACTAATCCAAATCCAAATTCATTCGATTGTGAAGACTATCAACGATGGTTTTCATGTCGAATTGCTCCAGATCCGAGTCATCAGAAGATTCTTCTTCATCTGAGATGTCAGAATCCTCACTTGATCCTTCTTCTTCTTCTTCTTCTTCTGGATCACTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAAGAAGCAGAATTTACAA</pcr_primer_p1>
		<pcr_primer_p2>GATTCGAAAGTCTTTAGGACTAGAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGTATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATC</canonical_amplicon>
		<polymorphic_amplicon>GGAAAAGAAGCAGAATTTACAAGCAGAATGGGGGCGGAGATGGAAAAAAAGGGGCGGGGTTTGGGGAGGAGGCCTTATTAGATGGGAATTTTTTGCAAATTCAAAGTGAGGGAAAAAAGAATATTGTAGTTCTACAGTAAGAAAGCTTCCACCGGGGGGGGGGGGGGGGAATCGGGTCACTAGGYATTAGTCTGGGTTACTGTAGAAACCAGGCACTTGATATATCTAGTCCTAAAGACTTTCGAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37349</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>169220</contig_pos>
        <strand>+</strand>
        <context>GAAAACGCAG[A/G]GTGCACAGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGGGGGACAGATCAAGAGAATCGAGAGGATCAGACAAACGAAAACGCAG</left_flank>
        <right_flank>GTGCACAGGGAGGAATGGTGGTCCGTGATGGTGGGTGAGGTATCGACCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCAGAGGATTAAGGTACGCTCTAGTGAACTTTGGTCAGATCAAATTGGAGAGAATGTTATCAGTATGTTGTTGTCTGGAGACGTAAAAGTAAACAGCATAAAAGTTTTGGAAAGGATACTGTAGATTGGAGGAGGAGAAAGAAAGCAATTTGGAAAACGAGAGGATGGATGGAAAAAAAATAAAAGAAAATAAAATCTTTGGATTGGTTCGAATATGGAGTTTTGGAGGTACAGTAACTGTCAACCACTCACAAAAAACCATATTACACAAACGTAATCCAGAAGACAAGGTAGTAAAGAATACAGCACATCTGAATGAATGAATCGACTCGACGAAGACGACGTTACGTGTCTTCAGGCCACGCCTTCAACAAGGCGGACCATAACGACCCGCCCCTCCGTCTCTATCCAGGCTAGAGACGTTTTGTGTGGTAGACATCAAGAAAAAGGGGGGACAGATCAAGAGAATCGAGAGGATCAGACAAACGAAAACGCAGAGTGCACAGGGAGGAATGGTGGTCCGTGATGGTGGGTGAGGTATCGACCGAACGGGAGAAGAAATGGTGAATATGAGGCAGAAACAGAGGTCAACAGGGACATTTCATCGTTGTTGTGCATTTGAAGAGATGGTGAGAGATAATTGAAGAGGAGGAGACGCAGAGAAAACTGCGAGAGAGATTATATGATGAAGTGGTAGTAGTATTGGCGGTGATTGTTTGAATGAGAATGAGTAAGAGAGATATGGAAGTAACATTTAGAGTGATCTGGTAACTGGAAAAAATAAGGCCAACTTCACAGAACCGCAACAGAAACTACCGTTAATCCTCCAATAGAATGTCGCTAAACTTTGAGCTCAATTATCTCGGTTCCTGTTAAAGTTATCAAAAAGTGCTAAATTGACAAACTATTTTTCATAAAATCACCAATATTTCATCATTTAGTTATTTTTTGATATCTTTCACAGGATCCGAGATAATTGAGTTCAAAGTTGAAAGCTA</canonical>
            <polymorphic>TGTCAGAGGATTAAGGTACGCTCTAGTGAACTTTGGTCAGATCAAATTGGAGAGAATGTTATCAGTATGTTGTTGTCTGGAGACGTAAAAGTAAACAGCATAAAAGTTTTGGAAAGGATACTGTAGATTGGAGGAGGAGAAAGAAAGCAATTTGGAAAACGAGAGGATGGATGGAAAAAAAATAAAAGAAAATAAAATCTTTGGATTGGTTCGAATATGGAGTTTTGGAGGTACAGTAACTGTCAACCACTCACAAAAAACCATATTACACAAACGTAATCCAGAAGACAAGGTAGTAAAGAATACAGCACATCTGAATGAATGAATCGACTCGACGAAGACGACGTTACGTGTCTTCAGGCCACGCCTTCAACAAGGCGGACCATAACGACCCGCCCCTCCGTCTCTATCCAGGCTAGAGACGTTTTGTGTGGTAGACATCAAGAAAAAGGGGGGACAGATCAAGAGAATCGAGAGGATCAGACAAACGAAAACGCAGRGTGCACAGGGAGGAATGGTGGTCCGTGATGGTGGGTGAGGTATCGACCGAACGGGAGAAGAAATGGTGAATATGAGGCAGAAACAGAGGTCAACAGGGACATTTCATCGTTGTTGTGCATTTGAAGAGATGGTGAGAGATAATTGAAGAGGAGGAGACGCAGAGAAAACTGCGAGAGAGATTATATGATGAAGTGGTAGTAGTATTGGCGGTGATTGTTTGAATGAGAATGAGTAAGAGAGATATGGAAGTAACATTTAGAGTGATCTGGTAACTGGAAAAAATAAGGCCAACTTCACAGAACCGCAACAGAAACTACCGTTAATCCTCCAATAGAATGTCGCTAAACTTTGAGCTCAATTATCTCGGTTCCTGTTAAAGTTATCAAAAAGTGCTAAATTGACAAACTATTTTTCATAAAATCACCAATATTTCATCATTTAGTTATTTTTTGATATCTTTCACAGGATCCGAGATAATTGAGTTCAAAGTTGAAAGCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGAGACGTTTTGTGTGGTAGA</pcr_primer_p1>
		<pcr_primer_p2>GTCTCCTCCTCTTCAATTATCTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTAGAGACGTTTTGTGTGGTAGACATCAAGAAAAAGGGGGGACAGATCAAGAGAATCGAGAGGATCAGACAAACGAAAACGCAGAGTGCACAGGGAGGAATGGTGGTCCGTGATGGTGGGTGAGGTATCGACCGAACGGGAGAAGAAATGGTGAATATGAGGCAGAAACAGAGGTCAACAGGGACATTTCATCGTTGTTGTGCATTTGAAGAGATGGTGAGAGATAATTGAAGAGGAGGAGAC</canonical_amplicon>
		<polymorphic_amplicon>CTAGAGACGTTTTGTGTGGTAGACATCAAGAAAAAGGGGGGACAGATCAAGAGAATCGAGAGGATCAGACAAACGAAAACGCAGRGTGCACAGGGAGGAATGGTGGTCCGTGATGGTGGGTGAGGTATCGACCGAACGGGAGAAGAAATGGTGAATATGAGGCAGAAACAGAGGTCAACAGGGACATTTCATCGTTGTTGTGCATTTGAAGAGATGGTGAGAGATAATTGAAGAGGAGGAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37350</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>169258</contig_pos>
        <strand>+</strand>
        <context>ATGGTGGGTG[A/C]GGTATCGACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACGAAAACGCAGAGTGCACAGGGAGGAATGGTGGTCCGTGATGGTGGGTG</left_flank>
        <right_flank>GGTATCGACCGAACGGGAGAAGAAATGGTGAATATGAGGCAGAAACAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATCAAATTGGAGAGAATGTTATCAGTATGTTGTTGTCTGGAGACGTAAAAGTAAACAGCATAAAAGTTTTGGAAAGGATACTGTAGATTGGAGGAGGAGAAAGAAAGCAATTTGGAAAACGAGAGGATGGATGGAAAAAAAATAAAAGAAAATAAAATCTTTGGATTGGTTCGAATATGGAGTTTTGGAGGTACAGTAACTGTCAACCACTCACAAAAAACCATATTACACAAACGTAATCCAGAAGACAAGGTAGTAAAGAATACAGCACATCTGAATGAATGAATCGACTCGACGAAGACGACGTTACGTGTCTTCAGGCCACGCCTTCAACAAGGCGGACCATAACGACCCGCCCCTCCGTCTCTATCCAGGCTAGAGACGTTTTGTGTGGTAGACATCAAGAAAAAGGGGGGACAGATCAAGAGAATCGAGAGGATCAGACAAACGAAAACGCAGAGTGCACAGGGAGGAATGGTGGTCCGTGATGGTGGGTGAGGTATCGACCGAACGGGAGAAGAAATGGTGAATATGAGGCAGAAACAGAGGTCAACAGGGACATTTCATCGTTGTTGTGCATTTGAAGAGATGGTGAGAGATAATTGAAGAGGAGGAGACGCAGAGAAAACTGCGAGAGAGATTATATGATGAAGTGGTAGTAGTATTGGCGGTGATTGTTTGAATGAGAATGAGTAAGAGAGATATGGAAGTAACATTTAGAGTGATCTGGTAACTGGAAAAAATAAGGCCAACTTCACAGAACCGCAACAGAAACTACCGTTAATCCTCCAATAGAATGTCGCTAAACTTTGAGCTCAATTATCTCGGTTCCTGTTAAAGTTATCAAAAAGTGCTAAATTGACAAACTATTTTTCATAAAATCACCAATATTTCATCATTTAGTTATTTTTTGATATCTTTCACAGGATCCGAGATAATTGAGTTCAAAGTTGAAAGCTAGGGAATCAGTAGTGTTTACGGTATGTCGCTTGGAACCT</canonical>
            <polymorphic>AGATCAAATTGGAGAGAATGTTATCAGTATGTTGTTGTCTGGAGACGTAAAAGTAAACAGCATAAAAGTTTTGGAAAGGATACTGTAGATTGGAGGAGGAGAAAGAAAGCAATTTGGAAAACGAGAGGATGGATGGAAAAAAAATAAAAGAAAATAAAATCTTTGGATTGGTTCGAATATGGAGTTTTGGAGGTACAGTAACTGTCAACCACTCACAAAAAACCATATTACACAAACGTAATCCAGAAGACAAGGTAGTAAAGAATACAGCACATCTGAATGAATGAATCGACTCGACGAAGACGACGTTACGTGTCTTCAGGCCACGCCTTCAACAAGGCGGACCATAACGACCCGCCCCTCCGTCTCTATCCAGGCTAGAGACGTTTTGTGTGGTAGACATCAAGAAAAAGGGGGGACAGATCAAGAGAATCGAGAGGATCAGACAAACGAAAACGCAGAGTGCACAGGGAGGAATGGTGGTCCGTGATGGTGGGTGMGGTATCGACCGAACGGGAGAAGAAATGGTGAATATGAGGCAGAAACAGAGGTCAACAGGGACATTTCATCGTTGTTGTGCATTTGAAGAGATGGTGAGAGATAATTGAAGAGGAGGAGACGCAGAGAAAACTGCGAGAGAGATTATATGATGAAGTGGTAGTAGTATTGGCGGTGATTGTTTGAATGAGAATGAGTAAGAGAGATATGGAAGTAACATTTAGAGTGATCTGGTAACTGGAAAAAATAAGGCCAACTTCACAGAACCGCAACAGAAACTACCGTTAATCCTCCAATAGAATGTCGCTAAACTTTGAGCTCAATTATCTCGGTTCCTGTTAAAGTTATCAAAAAGTGCTAAATTGACAAACTATTTTTCATAAAATCACCAATATTTCATCATTTAGTTATTTTTTGATATCTTTCACAGGATCCGAGATAATTGAGTTCAAAGTTGAAAGCTAGGGAATCAGTAGTGTTTACGGTATGTCGCTTGGAACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGAGACGTTTTGTGTGGTAGA</pcr_primer_p1>
		<pcr_primer_p2>GTCTCCTCCTCTTCAATTATCTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTAGAGACGTTTTGTGTGGTAGACATCAAGAAAAAGGGGGGACAGATCAAGAGAATCGAGAGGATCAGACAAACGAAAACGCAGAGTGCACAGGGAGGAATGGTGGTCCGTGATGGTGGGTGAGGTATCGACCGAACGGGAGAAGAAATGGTGAATATGAGGCAGAAACAGAGGTCAACAGGGACATTTCATCGTTGTTGTGCATTTGAAGAGATGGTGAGAGATAATTGAAGAGGAGGAGAC</canonical_amplicon>
		<polymorphic_amplicon>CTAGAGACGTTTTGTGTGGTAGACATCAAGAAAAAGGGGGGACAGATCAAGAGAATCGAGAGGATCAGACAAACGAAAACGCAGAGTGCACAGGGAGGAATGGTGGTCCGTGATGGTGGGTGMGGTATCGACCGAACGGGAGAAGAAATGGTGAATATGAGGCAGAAACAGAGGTCAACAGGGACATTTCATCGTTGTTGTGCATTTGAAGAGATGGTGAGAGATAATTGAAGAGGAGGAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37351</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>207495</contig_pos>
        <strand></strand>
        <context>caaaaatgtg[A/T]caacttctaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTAGTATGAGCTCAATTATCCCAATTTCTATTAGATATATCAAAAATGTG</left_flank>
        <right_flank>CAACTTCTAAAACGTTCATCATAATATCAGAAGTGTTTTATCAGTTGACC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAGGAAGCAAGATAAATTCGCTCAAAGTTAAAAGTTAGCGGCATCTTAATTTTTTAAATTAGAAAGATTGAATTCGGGAATTCTCGGGTTTCGCTTATTCAAAAAGCAATTAAATTCTCATTGCACCAGAAAAAAAATTTAAATTCTGTTTCACAAAAAAAGTAAATCTTCCAAAATACTTGTGGATGTTGATGTGACGGCTGTCTTTTCTTTTTTCTTTGTGATACAAGACATTTCAGAAAATTTGTTATTTTTTAGTTATTTGATTTGTTTCCAAAAATGTTATGTTTCGCTGAAAATTAAGAATATGTGATTTTTTAGTTTCTCGGTTCACCAAATTTCACATGCCTTGGAAAGTAAAAAAGTAGTTCAAAAATTTTGCTAATGAAAATGTTTCAATGGGATTGTACTACTGTGAAACCTGTAACAGAAGGGCACCCACACTGACTAGTATGAGCTCAATTATCCCAATTTCTATTAGATATATCAAAAATGTGACAACTTCTAAAACGTTCATCATAATATCAGAAGTGTTTTATCAGTTGACCAATTTTTGACATTTTGCGCAGGAATAGATATAATTGAGTTCAAACTTGAGGACTCTTCTTTTACTTCGTGTTGTAGCTACTGTAATTTCTTACATTTTCAATATTTCTGTTTCAAAAATCTAATTTCAGTTAAAAATTATTTTTAATTCTAATCAGCTTTGGTTTAGATGAAAGTACTGAAAATCAATTTCTAAATAAAATTACACTTTCAAAAACCCTTATTGCTTCTCTGCAACTTCAATTTTCGCTAGCATCTTAAAAACACCGGCCACATGAATTTTCCAACGAAGAATCCAGCCGCCATTCCGGATGGCCATTATCCCCATTTTTTGCCACCGAACCTTATAATTTTTATGACGTAGTGGCAAATTGGATATACACCCCCAAACTATTACCACCCAATTACATAAAAACTTTCCCCTCGAACTTTTTTATATGTCTATTAAAAAG</canonical>
            <polymorphic>AACAGGAAGCAAGATAAATTCGCTCAAAGTTAAAAGTTAGCGGCATCTTAATTTTTTAAATTAGAAAGATTGAATTCGGGAATTCTCGGGTTTCGCTTATTCAAAAAGCAATTAAATTCTCATTGCACCAGAAAAAAAATTTAAATTCTGTTTCACAAAAAAAGTAAATCTTCCAAAATACTTGTGGATGTTGATGTGACGGCTGTCTTTTCTTTTTTCTTTGTGATACAAGACATTTCAGAAAATTTGTTATTTTTTAGTTATTTGATTTGTTTCCAAAAATGTTATGTTTCGCTGAAAATTAAGAATATGTGATTTTTTAGTTTCTCGGTTCACCAAATTTCACATGCCTTGGAAAGTAAAAAAGTAGTTCAAAAATTTTGCTAATGAAAATGTTTCAATGGGATTGTACTACTGTGAAACCTGTAACAGAAGGGCACCCACACTGACTAGTATGAGCTCAATTATCCCAATTTCTATTAGATATATCAAAAATGTGWCAACTTCTAAAACGTTCATCATAATATCAGAAGTGTTTTATCAGTTGACCAATTTTTGACATTTTGCGCAGGAATAGATATAATTGAGTTCAAACTTGAGGACTCTTCTTTTACTTCGTGTTGTAGCTACTGTAATTTCTTACATTTTCAATATTTCTGTTTCAAAAATCTAATTTCAGTTAAAAATTATTTTTAATTCTAATCAGCTTTGGTTTAGATGAAAGTACTGAAAATCAATTTCTAAATAAAATTACACTTTCAAAAACCCTTATTGCTTCTCTGCAACTTCAATTTTCGCTAGCATCTTAAAAACACCGGCCACATGAATTTTCCAACGAAGAATCCAGCCGCCATTCCGGATGGCCATTATCCCCATTTTTTGCCACCGAACCTTATAATTTTTATGACGTAGTGGCAAATTGGATATACACCCCCAAACTATTACCACCCAATTACATAAAAACTTTCCCCTCGAACTTTTTTATATGTCTATTAAAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 230 195 71</canonical_bands>
                <polymorphic_bands>575 230 195</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>504 301 195</canonical_bands>
                <polymorphic_bands>805 195</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGTTTCAATGGGATTGTACT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAACAGAAATATTGAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>275</pcr_amplicon_size>
		<canonical_amplicon>AATGTTTCAATGGGATTGTACTACTGTGAAACCTGTAACAGAAGGGCACCCACACTGACTAGTATGAGCTCAATTATCCCAATTTCTATTAGATATATCAAAAATGTGACAACTTCTAAAACGTTCATCATAATATCAGAAGTGTTTTATCAGTTGACCAATTTTTGACATTTTGCGCAGGAATAGATATAATTGAGTTCAAACTTGAGGACTCTTCTTTTACTTCGTGTTGTAGCTACTGTAATTTCTTACATTTTCAATATTTCTGTTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>AATGTTTCAATGGGATTGTACTACTGTGAAACCTGTAACAGAAGGGCACCCACACTGACTAGTATGAGCTCAATTATCCCAATTTCTATTAGATATATCAAAAATGTGWCAACTTCTAAAACGTTCATCATAATATCAGAAGTGTTTTATCAGTTGACCAATTTTTGACATTTTGCGCAGGAATAGATATAATTGAGTTCAAACTTGAGGACTCTTCTTTTACTTCGTGTTGTAGCTACTGTAATTTCTTACATTTTCAATATTTCTGTTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37352</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>207594</contig_pos>
        <strand></strand>
        <context>ttcaaacttg[A/G]ggactcttct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAATTTTTGACATTTTGCGCAGGAATAGATATAATTGAGTTCAAACTTG</left_flank>
        <right_flank>GGACTCTTCTTTTACTTCGTGTTGTAGCTACTGTAATTTCTTACATTTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAAAAAGCAATTAAATTCTCATTGCACCAGAAAAAAAATTTAAATTCTGTTTCACAAAAAAAGTAAATCTTCCAAAATACTTGTGGATGTTGATGTGACGGCTGTCTTTTCTTTTTTCTTTGTGATACAAGACATTTCAGAAAATTTGTTATTTTTTAGTTATTTGATTTGTTTCCAAAAATGTTATGTTTCGCTGAAAATTAAGAATATGTGATTTTTTAGTTTCTCGGTTCACCAAATTTCACATGCCTTGGAAAGTAAAAAAGTAGTTCAAAAATTTTGCTAATGAAAATGTTTCAATGGGATTGTACTACTGTGAAACCTGTAACAGAAGGGCACCCACACTGACTAGTATGAGCTCAATTATCCCAATTTCTATTAGATATATCAAAAATGTGACAACTTCTAAAACGTTCATCATAATATCAGAAGTGTTTTATCAGTTGACCAATTTTTGACATTTTGCGCAGGAATAGATATAATTGAGTTCAAACTTGAGGACTCTTCTTTTACTTCGTGTTGTAGCTACTGTAATTTCTTACATTTTCAATATTTCTGTTTCAAAAATCTAATTTCAGTTAAAAATTATTTTTAATTCTAATCAGCTTTGGTTTAGATGAAAGTACTGAAAATCAATTTCTAAATAAAATTACACTTTCAAAAACCCTTATTGCTTCTCTGCAACTTCAATTTTCGCTAGCATCTTAAAAACACCGGCCACATGAATTTTCCAACGAAGAATCCAGCCGCCATTCCGGATGGCCATTATCCCCATTTTTTGCCACCGAACCTTATAATTTTTATGACGTAGTGGCAAATTGGATATACACCCCCAAACTATTACCACCCAATTACATAAAAACTTTCCCCTCGAACTTTTTTATATGTCTATTAAAAAGAGATATTAAACTTTCACTAAGAGATCATGAAAGTTTAATGGTTAGCTACTGTAAACTTAGAGCCAATATATCTTGCTTCTTGTCAAAGATACAAAAAAG</canonical>
            <polymorphic>TTCAAAAAGCAATTAAATTCTCATTGCACCAGAAAAAAAATTTAAATTCTGTTTCACAAAAAAAGTAAATCTTCCAAAATACTTGTGGATGTTGATGTGACGGCTGTCTTTTCTTTTTTCTTTGTGATACAAGACATTTCAGAAAATTTGTTATTTTTTAGTTATTTGATTTGTTTCCAAAAATGTTATGTTTCGCTGAAAATTAAGAATATGTGATTTTTTAGTTTCTCGGTTCACCAAATTTCACATGCCTTGGAAAGTAAAAAAGTAGTTCAAAAATTTTGCTAATGAAAATGTTTCAATGGGATTGTACTACTGTGAAACCTGTAACAGAAGGGCACCCACACTGACTAGTATGAGCTCAATTATCCCAATTTCTATTAGATATATCAAAAATGTGACAACTTCTAAAACGTTCATCATAATATCAGAAGTGTTTTATCAGTTGACCAATTTTTGACATTTTGCGCAGGAATAGATATAATTGAGTTCAAACTTGRGGACTCTTCTTTTACTTCGTGTTGTAGCTACTGTAATTTCTTACATTTTCAATATTTCTGTTTCAAAAATCTAATTTCAGTTAAAAATTATTTTTAATTCTAATCAGCTTTGGTTTAGATGAAAGTACTGAAAATCAATTTCTAAATAAAATTACACTTTCAAAAACCCTTATTGCTTCTCTGCAACTTCAATTTTCGCTAGCATCTTAAAAACACCGGCCACATGAATTTTCCAACGAAGAATCCAGCCGCCATTCCGGATGGCCATTATCCCCATTTTTTGCCACCGAACCTTATAATTTTTATGACGTAGTGGCAAATTGGATATACACCCCCAAACTATTACCACCCAATTACATAAAAACTTTCCCCTCGAACTTTTTTATATGTCTATTAAAAAGAGATATTAAACTTTCACTAAGAGATCATGAAAGTTTAATGGTTAGCTACTGTAAACTTAGAGCCAATATATCTTGCTTCTTGTCAAAGATACAAAAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGTTTCAATGGGATTGTACT</pcr_primer_p1>
		<pcr_primer_p2>TTTGAAACAGAAATATTGAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>275</pcr_amplicon_size>
		<canonical_amplicon>AATGTTTCAATGGGATTGTACTACTGTGAAACCTGTAACAGAAGGGCACCCACACTGACTAGTATGAGCTCAATTATCCCAATTTCTATTAGATATATCAAAAATGTGACAACTTCTAAAACGTTCATCATAATATCAGAAGTGTTTTATCAGTTGACCAATTTTTGACATTTTGCGCAGGAATAGATATAATTGAGTTCAAACTTGAGGACTCTTCTTTTACTTCGTGTTGTAGCTACTGTAATTTCTTACATTTTCAATATTTCTGTTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>AATGTTTCAATGGGATTGTACTACTGTGAAACCTGTAACAGAAGGGCACCCACACTGACTAGTATGAGCTCAATTATCCCAATTTCTATTAGATATATCAAAAATGTGACAACTTCTAAAACGTTCATCATAATATCAGAAGTGTTTTATCAGTTGACCAATTTTTGACATTTTGCGCAGGAATAGATATAATTGAGTTCAAACTTGRGGACTCTTCTTTTACTTCGTGTTGTAGCTACTGTAATTTCTTACATTTTCAATATTTCTGTTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37353</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>209574</contig_pos>
        <strand>+</strand>
        <context>TACTGTCAAA[C/T]TAAGGTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTATGACGGGGACAATGACAAAACCCCATTCCACAGGGGTTACTGTCAAA</left_flank>
        <right_flank>TAAGGTTTTCTGTGATAAAGTGAGTTTTTTTCCCGAAATTTTGAGATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCTTCAAAATTTAAAAACATAAAACTTTTTCAGTTTCAAAAATCTGAAAAATAAAAAATTGTAAAGTTTTGTATTATGATTATAATATTTGCATAATTTGAACTTTTGAGATCGAGAAAATTGGGTTTCATCTTTTTTTTTAAGTAGCTGAAATTTTTAATTTTTGTGCTGAAAATACAAAAGAAACATTGAGAAAACCCTCAAAAAATCAAGTTAAAATCCCTAGCTGTCTGTGTCTCTTGCCCCGTCCACACTCTCTGACGCTATCTAACGCGGACGGAGCTGAAGAGACGCCGACAACGAGACGTTCTAACTTTCTGCACCCTCTTCTTTCCCCACAATATTTCCCCCAATTTTTCAGATTTCCATTGCCGTCCAATGTCTCTCCACAGATTTTTCAACACAAAAAGGTGTAAAGGGTCTTCCGCTGCACGTACAAATCGATACTTATGACGGGGACAATGACAAAACCCCATTCCACAGGGGTTACTGTCAAATTAAGGTTTTCTGTGATAAAGTGAGTTTTTTTCCCGAAATTTTGAGATTTTCGAAAAAAAATTTCAAAAAGATAATTCTAAATTTTGCATAAAATTAGGGCGCTGAGCGAAAACTTCGCGACGAAGACAAACGAGCGGCGAAACGAAAAGTTCAAGGTACAGTAATCCTTCCTTCTCTATCTTTCTATATGTTCTCTTTTTATACACATTGTGTCGTATACTGTAGTTTCAGTCAATTTTCTAACAGAGTATCTCAAAAAGTCCGTGTTTGTTTTTCTTCGTCGTGTCGTTTTCTTGTCAGTGTCCTACCGTAATCCTTACCGTAATCTTCATGTGTCCACGTGTCTTTTTATAGGGAGCTAATCGAAAAATGTTGCACGAAAACCGGCGAGACGAGAAGCGAAGGTTGCAAGGTAATCTATTTGATATCTAACCTTATATGTGAAAGTTTGCTCTACTGGACTTAGTCCAGTGAAGCACACTTACTCCATGTTTCATGTA</canonical>
            <polymorphic>GTTCTTCAAAATTTAAAAACATAAAACTTTTTCAGTTTCAAAAATCTGAAAAATAAAAAATTGTAAAGTTTTGTATTATGATTATAATATTTGCATAATTTGAACTTTTGAGATCGAGAAAATTGGGTTTCATCTTTTTTTTTAAGTAGCTGAAATTTTTAATTTTTGTGCTGAAAATACAAAAGAAACATTGAGAAAACCCTCAAAAAATCAAGTTAAAATCCCTAGCTGTCTGTGTCTCTTGCCCCGTCCACACTCTCTGACGCTATCTAACGCGGACGGAGCTGAAGAGACGCCGACAACGAGACGTTCTAACTTTCTGCACCCTCTTCTTTCCCCACAATATTTCCCCCAATTTTTCAGATTTCCATTGCCGTCCAATGTCTCTCCACAGATTTTTCAACACAAAAAGGTGTAAAGGGTCTTCCGCTGCACGTACAAATCGATACTTATGACGGGGACAATGACAAAACCCCATTCCACAGGGGTTACTGTCAAAYTAAGGTTTTCTGTGATAAAGTGAGTTTTTTTCCCGAAATTTTGAGATTTTCGAAAAAAAATTTCAAAAAGATAATTCTAAATTTTGCATAAAATTAGGGCGCTGAGCGAAAACTTCGCGACGAAGACAAACGAGCGGCGAAACGAAAAGTTCAAGGTACAGTAATCCTTCCTTCTCTATCTTTCTATATGTTCTCTTTTTATACACATTGTGTCGTATACTGTAGTTTCAGTCAATTTTCTAACAGAGTATCTCAAAAAGTCCGTGTTTGTTTTTCTTCGTCGTGTCGTTTTCTTGTCAGTGTCCTACCGTAATCCTTACCGTAATCTTCATGTGTCCACGTGTCTTTTTATAGGGAGCTAATCGAAAAATGTTGCACGAAAACCGGCGAGACGAGAAGCGAAGGTTGCAAGGTAATCTATTTGATATCTAACCTTATATGTGAAAGTTTGCTCTACTGGACTTAGTCCAGTGAAGCACACTTACTCCATGTTTCATGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>500 284 129 57 17 13</canonical_bands>
                <polymorphic_bands>784 129 57 17 13</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>267 193 144 142 49 39 38 33 24 22 14 12 9 7 7</canonical_bands>
                <polymorphic_bands>267 193 183 142 49 38 33 24 22 14 12 9 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACGTACAAATCGATACTTATGAC</pcr_primer_p1>
		<pcr_primer_p2>AGAGAAGGAAGGATTACTGTACC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACGTACAAATCGATACTTATGACGGGGACAATGACAAAACCCCATTCCACAGGGGTTACTGTCAAATTAAGGTTTTCTGTGATAAAGTGAGTTTTTTTCCCGAAATTTTGAGATTTTCGAAAAAAAATTTCAAAAAGATAATTCTAAATTTTGCATAAAATTAGGGCGCTGAGCGAAAACTTCGCGACGAAGACAAACGAGCGGCGAAACGAAAAGTTCAAGGTACAGTAATCCTTCCTTCTCT</canonical_amplicon>
		<polymorphic_amplicon>CACGTACAAATCGATACTTATGACGGGGACAATGACAAAACCCCATTCCACAGGGGTTACTGTCAAAYTAAGGTTTTCTGTGATAAAGTGAGTTTTTTTCCCGAAATTTTGAGATTTTCGAAAAAAAATTTCAAAAAGATAATTCTAAATTTTGCATAAAATTAGGGCGCTGAGCGAAAACTTCGCGACGAAGACAAACGAGCGGCGAAACGAAAAGTTCAAGGTACAGTAATCCTTCCTTCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37354</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>209601</contig_pos>
        <strand>+</strand>
        <context>AAAGTGAGTT[G/T]TTTTCCCGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTCCACAGGGGTTACTGTCAAATTAAGGTTTTCTGTGATAAAGTGAGTT</left_flank>
        <right_flank>TTTTCCCGAAATTTTGAGATTTTCGAAAAAAAATTTCAAAAAGATAATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCAGTTTCAAAAATCTGAAAAATAAAAAATTGTAAAGTTTTGTATTATGATTATAATATTTGCATAATTTGAACTTTTGAGATCGAGAAAATTGGGTTTCATCTTTTTTTTTAAGTAGCTGAAATTTTTAATTTTTGTGCTGAAAATACAAAAGAAACATTGAGAAAACCCTCAAAAAATCAAGTTAAAATCCCTAGCTGTCTGTGTCTCTTGCCCCGTCCACACTCTCTGACGCTATCTAACGCGGACGGAGCTGAAGAGACGCCGACAACGAGACGTTCTAACTTTCTGCACCCTCTTCTTTCCCCACAATATTTCCCCCAATTTTTCAGATTTCCATTGCCGTCCAATGTCTCTCCACAGATTTTTCAACACAAAAAGGTGTAAAGGGTCTTCCGCTGCACGTACAAATCGATACTTATGACGGGGACAATGACAAAACCCCATTCCACAGGGGTTACTGTCAAATTAAGGTTTTCTGTGATAAAGTGAGTTTTTTTCCCGAAATTTTGAGATTTTCGAAAAAAAATTTCAAAAAGATAATTCTAAATTTTGCATAAAATTAGGGCGCTGAGCGAAAACTTCGCGACGAAGACAAACGAGCGGCGAAACGAAAAGTTCAAGGTACAGTAATCCTTCCTTCTCTATCTTTCTATATGTTCTCTTTTTATACACATTGTGTCGTATACTGTAGTTTCAGTCAATTTTCTAACAGAGTATCTCAAAAAGTCCGTGTTTGTTTTTCTTCGTCGTGTCGTTTTCTTGTCAGTGTCCTACCGTAATCCTTACCGTAATCTTCATGTGTCCACGTGTCTTTTTATAGGGAGCTAATCGAAAAATGTTGCACGAAAACCGGCGAGACGAGAAGCGAAGGTTGCAAGGTAATCTATTTGATATCTAACCTTATATGTGAAAGTTTGCTCTACTGGACTTAGTCCAGTGAAGCACACTTACTCCATGTTTCATGTAACTTACTTCATGTTTCATGTCCTAACG</canonical>
            <polymorphic>TTTTTCAGTTTCAAAAATCTGAAAAATAAAAAATTGTAAAGTTTTGTATTATGATTATAATATTTGCATAATTTGAACTTTTGAGATCGAGAAAATTGGGTTTCATCTTTTTTTTTAAGTAGCTGAAATTTTTAATTTTTGTGCTGAAAATACAAAAGAAACATTGAGAAAACCCTCAAAAAATCAAGTTAAAATCCCTAGCTGTCTGTGTCTCTTGCCCCGTCCACACTCTCTGACGCTATCTAACGCGGACGGAGCTGAAGAGACGCCGACAACGAGACGTTCTAACTTTCTGCACCCTCTTCTTTCCCCACAATATTTCCCCCAATTTTTCAGATTTCCATTGCCGTCCAATGTCTCTCCACAGATTTTTCAACACAAAAAGGTGTAAAGGGTCTTCCGCTGCACGTACAAATCGATACTTATGACGGGGACAATGACAAAACCCCATTCCACAGGGGTTACTGTCAAATTAAGGTTTTCTGTGATAAAGTGAGTTKTTTTCCCGAAATTTTGAGATTTTCGAAAAAAAATTTCAAAAAGATAATTCTAAATTTTGCATAAAATTAGGGCGCTGAGCGAAAACTTCGCGACGAAGACAAACGAGCGGCGAAACGAAAAGTTCAAGGTACAGTAATCCTTCCTTCTCTATCTTTCTATATGTTCTCTTTTTATACACATTGTGTCGTATACTGTAGTTTCAGTCAATTTTCTAACAGAGTATCTCAAAAAGTCCGTGTTTGTTTTTCTTCGTCGTGTCGTTTTCTTGTCAGTGTCCTACCGTAATCCTTACCGTAATCTTCATGTGTCCACGTGTCTTTTTATAGGGAGCTAATCGAAAAATGTTGCACGAAAACCGGCGAGACGAGAAGCGAAGGTTGCAAGGTAATCTATTTGATATCTAACCTTATATGTGAAAGTTTGCTCTACTGGACTTAGTCCAGTGAAGCACACTTACTCCATGTTTCATGTAACTTACTTCATGTTTCATGTCCTAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACGTACAAATCGATACTTATGAC</pcr_primer_p1>
		<pcr_primer_p2>AGAGAAGGAAGGATTACTGTACC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACGTACAAATCGATACTTATGACGGGGACAATGACAAAACCCCATTCCACAGGGGTTACTGTCAAATTAAGGTTTTCTGTGATAAAGTGAGTTTTTTTCCCGAAATTTTGAGATTTTCGAAAAAAAATTTCAAAAAGATAATTCTAAATTTTGCATAAAATTAGGGCGCTGAGCGAAAACTTCGCGACGAAGACAAACGAGCGGCGAAACGAAAAGTTCAAGGTACAGTAATCCTTCCTTCTCT</canonical_amplicon>
		<polymorphic_amplicon>CACGTACAAATCGATACTTATGACGGGGACAATGACAAAACCCCATTCCACAGGGGTTACTGTCAAATTAAGGTTTTCTGTGATAAAGTGAGTTKTTTTCCCGAAATTTTGAGATTTTCGAAAAAAAATTTCAAAAAGATAATTCTAAATTTTGCATAAAATTAGGGCGCTGAGCGAAAACTTCGCGACGAAGACAAACGAGCGGCGAAACGAAAAGTTCAAGGTACAGTAATCCTTCCTTCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37355</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>209627</contig_pos>
        <strand>+</strand>
        <context>GAGATTTTCG[A/T]AAAAAAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGGTTTTCTGTGATAAAGTGAGTTTTTTTCCCGAAATTTTGAGATTTTCG</left_flank>
        <right_flank>AAAAAAATTTCAAAAAGATAATTCTAAATTTTGCATAAAATTAGGGCGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAAAATTGTAAAGTTTTGTATTATGATTATAATATTTGCATAATTTGAACTTTTGAGATCGAGAAAATTGGGTTTCATCTTTTTTTTTAAGTAGCTGAAATTTTTAATTTTTGTGCTGAAAATACAAAAGAAACATTGAGAAAACCCTCAAAAAATCAAGTTAAAATCCCTAGCTGTCTGTGTCTCTTGCCCCGTCCACACTCTCTGACGCTATCTAACGCGGACGGAGCTGAAGAGACGCCGACAACGAGACGTTCTAACTTTCTGCACCCTCTTCTTTCCCCACAATATTTCCCCCAATTTTTCAGATTTCCATTGCCGTCCAATGTCTCTCCACAGATTTTTCAACACAAAAAGGTGTAAAGGGTCTTCCGCTGCACGTACAAATCGATACTTATGACGGGGACAATGACAAAACCCCATTCCACAGGGGTTACTGTCAAATTAAGGTTTTCTGTGATAAAGTGAGTTTTTTTCCCGAAATTTTGAGATTTTCGAAAAAAAATTTCAAAAAGATAATTCTAAATTTTGCATAAAATTAGGGCGCTGAGCGAAAACTTCGCGACGAAGACAAACGAGCGGCGAAACGAAAAGTTCAAGGTACAGTAATCCTTCCTTCTCTATCTTTCTATATGTTCTCTTTTTATACACATTGTGTCGTATACTGTAGTTTCAGTCAATTTTCTAACAGAGTATCTCAAAAAGTCCGTGTTTGTTTTTCTTCGTCGTGTCGTTTTCTTGTCAGTGTCCTACCGTAATCCTTACCGTAATCTTCATGTGTCCACGTGTCTTTTTATAGGGAGCTAATCGAAAAATGTTGCACGAAAACCGGCGAGACGAGAAGCGAAGGTTGCAAGGTAATCTATTTGATATCTAACCTTATATGTGAAAGTTTGCTCTACTGGACTTAGTCCAGTGAAGCACACTTACTCCATGTTTCATGTAACTTACTTCATGTTTCATGTCCTAACGCTTTCTACCGTAATCCTTCAAGTCCA</canonical>
            <polymorphic>TAAAAAATTGTAAAGTTTTGTATTATGATTATAATATTTGCATAATTTGAACTTTTGAGATCGAGAAAATTGGGTTTCATCTTTTTTTTTAAGTAGCTGAAATTTTTAATTTTTGTGCTGAAAATACAAAAGAAACATTGAGAAAACCCTCAAAAAATCAAGTTAAAATCCCTAGCTGTCTGTGTCTCTTGCCCCGTCCACACTCTCTGACGCTATCTAACGCGGACGGAGCTGAAGAGACGCCGACAACGAGACGTTCTAACTTTCTGCACCCTCTTCTTTCCCCACAATATTTCCCCCAATTTTTCAGATTTCCATTGCCGTCCAATGTCTCTCCACAGATTTTTCAACACAAAAAGGTGTAAAGGGTCTTCCGCTGCACGTACAAATCGATACTTATGACGGGGACAATGACAAAACCCCATTCCACAGGGGTTACTGTCAAATTAAGGTTTTCTGTGATAAAGTGAGTTTTTTTCCCGAAATTTTGAGATTTTCGWAAAAAAATTTCAAAAAGATAATTCTAAATTTTGCATAAAATTAGGGCGCTGAGCGAAAACTTCGCGACGAAGACAAACGAGCGGCGAAACGAAAAGTTCAAGGTACAGTAATCCTTCCTTCTCTATCTTTCTATATGTTCTCTTTTTATACACATTGTGTCGTATACTGTAGTTTCAGTCAATTTTCTAACAGAGTATCTCAAAAAGTCCGTGTTTGTTTTTCTTCGTCGTGTCGTTTTCTTGTCAGTGTCCTACCGTAATCCTTACCGTAATCTTCATGTGTCCACGTGTCTTTTTATAGGGAGCTAATCGAAAAATGTTGCACGAAAACCGGCGAGACGAGAAGCGAAGGTTGCAAGGTAATCTATTTGATATCTAACCTTATATGTGAAAGTTTGCTCTACTGGACTTAGTCCAGTGAAGCACACTTACTCCATGTTTCATGTAACTTACTTCATGTTTCATGTCCTAACGCTTTCTACCGTAATCCTTCAAGTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>329 313 189 107 62</canonical_bands>
                <polymorphic_bands>420 329 189 62</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACGTACAAATCGATACTTATGAC</pcr_primer_p1>
		<pcr_primer_p2>AGAGAAGGAAGGATTACTGTACC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACGTACAAATCGATACTTATGACGGGGACAATGACAAAACCCCATTCCACAGGGGTTACTGTCAAATTAAGGTTTTCTGTGATAAAGTGAGTTTTTTTCCCGAAATTTTGAGATTTTCGAAAAAAAATTTCAAAAAGATAATTCTAAATTTTGCATAAAATTAGGGCGCTGAGCGAAAACTTCGCGACGAAGACAAACGAGCGGCGAAACGAAAAGTTCAAGGTACAGTAATCCTTCCTTCTCT</canonical_amplicon>
		<polymorphic_amplicon>CACGTACAAATCGATACTTATGACGGGGACAATGACAAAACCCCATTCCACAGGGGTTACTGTCAAATTAAGGTTTTCTGTGATAAAGTGAGTTTTTTTCCCGAAATTTTGAGATTTTCGWAAAAAAATTTCAAAAAGATAATTCTAAATTTTGCATAAAATTAGGGCGCTGAGCGAAAACTTCGCGACGAAGACAAACGAGCGGCGAAACGAAAAGTTCAAGGTACAGTAATCCTTCCTTCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37356</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>209667</contig_pos>
        <strand>+</strand>
        <context>TTTGCAWAAA[C/G]TTAGGGCGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAGATTTTCGAAAAAAAATTTCAAAAAGATAATTCTAAATTTTGCATAAA</left_flank>
        <right_flank>TTAGGGCGCTGAGCGAAAACTTCGCGACGAAGACAAACGAGCGGCGAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATAATTTGAACTTTTGAGATCGAGAAAATTGGGTTTCATCTTTTTTTTTAAGTAGCTGAAATTTTTAATTTTTGTGCTGAAAATACAAAAGAAACATTGAGAAAACCCTCAAAAAATCAAGTTAAAATCCCTAGCTGTCTGTGTCTCTTGCCCCGTCCACACTCTCTGACGCTATCTAACGCGGACGGAGCTGAAGAGACGCCGACAACGAGACGTTCTAACTTTCTGCACCCTCTTCTTTCCCCACAATATTTCCCCCAATTTTTCAGATTTCCATTGCCGTCCAATGTCTCTCCACAGATTTTTCAACACAAAAAGGTGTAAAGGGTCTTCCGCTGCACGTACAAATCGATACTTATGACGGGGACAATGACAAAACCCCATTCCACAGGGGTTACTGTCAAATTAAGGTTTTCTGTGATAAAGTGAGTTTTTTTCCCGAAATTTTGAGATTTTCGAAAAAAAATTTCAAAAAGATAATTCTAAATTTTGCATAAAATTAGGGCGCTGAGCGAAAACTTCGCGACGAAGACAAACGAGCGGCGAAACGAAAAGTTCAAGGTACAGTAATCCTTCCTTCTCTATCTTTCTATATGTTCTCTTTTTATACACATTGTGTCGTATACTGTAGTTTCAGTCAATTTTCTAACAGAGTATCTCAAAAAGTCCGTGTTTGTTTTTCTTCGTCGTGTCGTTTTCTTGTCAGTGTCCTACCGTAATCCTTACCGTAATCTTCATGTGTCCACGTGTCTTTTTATAGGGAGCTAATCGAAAAATGTTGCACGAAAACCGGCGAGACGAGAAGCGAAGGTTGCAAGGTAATCTATTTGATATCTAACCTTATATGTGAAAGTTTGCTCTACTGGACTTAGTCCAGTGAAGCACACTTACTCCATGTTTCATGTAACTTACTTCATGTTTCATGTCCTAACGCTTTCTACCGTAATCCTTCAAGTCCATCTTTAAACATTTTCAGAAATTTCAGAGTTCCAATCAGCA</canonical>
            <polymorphic>CATAATTTGAACTTTTGAGATCGAGAAAATTGGGTTTCATCTTTTTTTTTAAGTAGCTGAAATTTTTAATTTTTGTGCTGAAAATACAAAAGAAACATTGAGAAAACCCTCAAAAAATCAAGTTAAAATCCCTAGCTGTCTGTGTCTCTTGCCCCGTCCACACTCTCTGACGCTATCTAACGCGGACGGAGCTGAAGAGACGCCGACAACGAGACGTTCTAACTTTCTGCACCCTCTTCTTTCCCCACAATATTTCCCCCAATTTTTCAGATTTCCATTGCCGTCCAATGTCTCTCCACAGATTTTTCAACACAAAAAGGTGTAAAGGGTCTTCCGCTGCACGTACAAATCGATACTTATGACGGGGACAATGACAAAACCCCATTCCACAGGGGTTACTGTCAAATTAAGGTTTTCTGTGATAAAGTGAGTTTTTTTCCCGAAATTTTGAGATTTTCGAAAAAAAATTTCAAAAAGATAATTCTAAATTTTGCATAAASTTAGGGCGCTGAGCGAAAACTTCGCGACGAAGACAAACGAGCGGCGAAACGAAAAGTTCAAGGTACAGTAATCCTTCCTTCTCTATCTTTCTATATGTTCTCTTTTTATACACATTGTGTCGTATACTGTAGTTTCAGTCAATTTTCTAACAGAGTATCTCAAAAAGTCCGTGTTTGTTTTTCTTCGTCGTGTCGTTTTCTTGTCAGTGTCCTACCGTAATCCTTACCGTAATCTTCATGTGTCCACGTGTCTTTTTATAGGGAGCTAATCGAAAAATGTTGCACGAAAACCGGCGAGACGAGAAGCGAAGGTTGCAAGGTAATCTATTTGATATCTAACCTTATATGTGAAAGTTTGCTCTACTGGACTTAGTCCAGTGAAGCACACTTACTCCATGTTTCATGTAACTTACTTCATGTTTCATGTCCTAACGCTTTCTACCGTAATCCTTCAAGTCCATCTTTAAACATTTTCAGAAATTTCAGAGTTCCAATCAGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>338 193 144 142 39 33 24 22 22 14 12 7 7 3</canonical_bands>
                <polymorphic_bands>338 193 154 144 39 33 24 22 22 14 7 7 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACGTACAAATCGATACTTATGAC</pcr_primer_p1>
		<pcr_primer_p2>AGAGAAGGAAGGATTACTGTACC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CACGTACAAATCGATACTTATGACGGGGACAATGACAAAACCCCATTCCACAGGGGTTACTGTCAAATTAAGGTTTTCTGTGATAAAGTGAGTTTTTTTCCCGAAATTTTGAGATTTTCGAAAAAAAATTTCAAAAAGATAATTCTAAATTTTGCATAAAATTAGGGCGCTGAGCGAAAACTTCGCGACGAAGACAAACGAGCGGCGAAACGAAAAGTTCAAGGTACAGTAATCCTTCCTTCTCT</canonical_amplicon>
		<polymorphic_amplicon>CACGTACAAATCGATACTTATGACGGGGACAATGACAAAACCCCATTCCACAGGGGTTACTGTCAAATTAAGGTTTTCTGTGATAAAGTGAGTTTTTTTCCCGAAATTTTGAGATTTTCGAAAAAAAATTTCAAAAAGATAATTCTAAATTTTGCATAAASTTAGGGCGCTGAGCGAAAACTTCGCGACGAAGACAAACGAGCGGCGAAACGAAAAGTTCAAGGTACAGTAATCCTTCCTTCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37363</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>229353</contig_pos>
        <strand></strand>
        <context>caggttttac[T/C]CAATTTGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATTGAGCTCTAACTTGACAGTATGGAGGCCCTTCTATTACAGGTTTTAC</left_flank>
        <right_flank>CAATTTGTTTACCTCAATAGACCCTGCGGATCTGATGAAAAAAGTCTGAT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACATTGAATCTCCGTTCGTCTTGGAAAAGGAACGAGTTGTTGATACTGCTCAACGAGGAGAACACCGATTCGACGAGTCTGAAAAATGAAAAAATCAGATGACGTGCTTTTAGAAGACGTCGCTTACGCCATCAAATCCAACTTTTCTCCAGATCGCAGTGCTTTTTCAAAGATCTCTCTATCGATTTTGGATGGCATTTTTACTGGGCAGCTTGGTCCCACAATTTCGTTTTGCTGAAAAAAATTGCAGGGTCATTTTTAGGTTTAGAATACCTTCAATAGAAGGGCCCTCTACCTTTTTGCTGGGAGCCAATTTCCTGTCAAAGATATAAAAAAAGTTGTCAACTGATAAATTGCATAACATAACCAGCCTGTTTGCCGAGCCTTTGGCGCGATTTTATTTTTATCAGCTGACCCATTTTGGATGACTCTCATAGGAATCGAGATAATTGAGCTCTAACTTGACAGTATGGAGGCCCTTCTATTACAGGTTTTACTCAATTTGTTTACCTCAATAGACCCTGCGGATCTGATGAAAAAAGTCTGATGATATCCTGCAAAAACCGCTGTCACATGATCCAAATCGTCAGTTTTCCGTGGTGTCGACTGAGTCATAATCTTCCCGTTTCCGAGTTGTCCACTGGAATTCAGTCCAAATGGATATGGAGATCCGCGGATGATGGCGATAGTATGGCATGCTCCTGCGGCGATCCGGGTGACATGGGAGCCGATTAGATCGGAGACGGCTGTGGGGTTGGGACGTTTTTCGAGTCTGGAAAATGAGGAAATTGGGATAATAATCATAAAAGCAGCTTCTATGAAAGTATTAGAATACGGTAAATGCTCTAATAGAATATCACCCTATGCGTTCACTTCGAACTTAATCATCTAGGTTCCTGTCAAAGATATAGCAAAAAAAAATTGTGTATCATAATATCATTGACATTTTATCAGTTGACACATTTTTGATACCTCTTATAGGAACCGAGATAATTGAG</canonical>
            <polymorphic>CCACATTGAATCTCCGTTCGTCTTGGAAAAGGAACGAGTTGTTGATACTGCTCAACGAGGAGAACACCGATTCGACGAGTCTGAAAAATGAAAAAATCAGATGACGTGCTTTTAGAAGACGTCGCTTACGCCATCAAATCCAACTTTTCTCCAGATCGCAGTGCTTTTTCAAAGATCTCTCTATCGATTTTGGATGGCATTTTTACTGGGCAGCTTGGTCCCACAATTTCGTTTTGCTGAAAAAAATTGCAGGGTCATTTTTAGGTTTAGAATACCTTCAATAGAAGGGCCCTCTACCTTTTTGCTGGGAGCCAATTTCCTGTCAAAGATATAAAAAAAGTTGTCAACTGATAAATTGCATAACATAACCAGCCTGTTTGCCGAGCCTTTGGCGCGATTTTATTTTTATCAGCTGACCCATTTTGGATGACTCTCATAGGAATCGAGATAATTGAGCTCTAACTTGACAGTATGGAGGCCCTTCTATTACAGGTTTTACYCAATTTGTTTACCTCAATAGACCCTGCGGATCTGATGAAAAAAGTCTGATGATATCCTGCAAAAACCGCTGTCACATGATCCAAATCGTCAGTTTTCCGTGGTGTCGACTGAGTCATAATCTTCCCGTTTCCGAGTTGTCCACTGGAATTCAGTCCAAATGGATATGGAGATCCGCGGATGATGGCGATAGTATGGCATGCTCCTGCGGCGATCCGGGTGACATGGGAGCCGATTAGATCGGAGACGGCTGTGGGGTTGGGACGTTTTTCGAGTCTGGAAAATGAGGAAATTGGGATAATAATCATAAAAGCAGCTTCTATGAAAGTATTAGAATACGGTAAATGCTCTAATAGAATATCACCCTATGCGTTCACTTCGAACTTAATCATCTAGGTTCCTGTCAAAGATATAGCAAAAAAAAATTGTGTATCATAATATCATTGACATTTTATCAGTTGACACATTTTTGATACCTCTTATAGGAACCGAGATAATTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGGTCATTTTTAGGTTTAGAAT</pcr_primer_p1>
		<pcr_primer_p2>GCAGGATATCATCAGACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>310</pcr_amplicon_size>
		<canonical_amplicon>AGGGTCATTTTTAGGTTTAGAATACCTTCAATAGAAGGGCCCTCTACCTTTTTGCTGGGAGCCAATTTCCTGTCAAAGATATAAAAAAAGTTGTCAACTGATAAATTGCATAACATAACCAGCCTGTTTGCCGAGCCTTTGGCGCGATTTTATTTTTATCAGCTGACCCATTTTGGATGACTCTCATAGGAATCGAGATAATTGAGCTCTAACTTGACAGTATGGAGGCCCTTCTATTACAGGTTTTACTCAATTTGTTTACCTCAATAGACCCTGCGGATCTGATGAAAAAAGTCTGATGATATCCTGC</canonical_amplicon>
		<polymorphic_amplicon>AGGGTCATTTTTAGGTTTAGAATACCTTCAATAGAAGGGCCCTCTACCTTTTTGCTGGGAGCCAATTTCCTGTCAAAGATATAAAAAAAGTTGTCAACTGATAAATTGCATAACATAACCAGCCTGTTTGCCGAGCCTTTGGCGCGATTTTATTTTTATCAGCTGACCCATTTTGGATGACTCTCATAGGAATCGAGATAATTGAGCTCTAACTTGACAGTATGGAGGCCCTTCTATTACAGGTTTTACYCAATTTGTTTACCTCAATAGACCCTGCGGATCTGATGAAAAAAGTCTGATGATATCCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37364</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>229739</contig_pos>
        <strand></strand>
        <context>ttcgaactta[A/T]tyatctaggt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACGGTAAATGCTCTAATAGAATATCACCCTATGCGTTCACTTCGAACTTA</left_flank>
        <right_flank>TCATCTAGGTTCCTGTCAAAGATATAGCAAAAAAAAATTGTGTATCATAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTGGCGCGATTTTATTTTTATCAGCTGACCCATTTTGGATGACTCTCATAGGAATCGAGATAATTGAGCTCTAACTTGACAGTATGGAGGCCCTTCTATTACAGGTTTTACTCAATTTGTTTACCTCAATAGACCCTGCGGATCTGATGAAAAAAGTCTGATGATATCCTGCAAAAACCGCTGTCACATGATCCAAATCGTCAGTTTTCCGTGGTGTCGACTGAGTCATAATCTTCCCGTTTCCGAGTTGTCCACTGGAATTCAGTCCAAATGGATATGGAGATCCGCGGATGATGGCGATAGTATGGCATGCTCCTGCGGCGATCCGGGTGACATGGGAGCCGATTAGATCGGAGACGGCTGTGGGGTTGGGACGTTTTTCGAGTCTGGAAAATGAGGAAATTGGGATAATAATCATAAAAGCAGCTTCTATGAAAGTATTAGAATACGGTAAATGCTCTAATAGAATATCACCCTATGCGTTCACTTCGAACTTAATCATCTAGGTTCCTGTCAAAGATATAGCAAAAAAAAATTGTGTATCATAATATCATTGACATTTTATCAGTTGACACATTTTTGATACCTCTTATAGGAACCGAGATAATTGAGCTCAAAGTTGACGGTTGAGATAGGCTTCTATTAGAGGAAACATTAGCTACAGTAATCCGGTAGAAAATGATTAAACTGTAAACCAGATCATCAACCATTTATTAACTAAAGGCTGCCTCGACTCGGAACACAGTAATCCGGAATATCTACAGTCATTCCATAGTAAGTTACAGTAATCTTCACCACAAATCTTATGTAACCGAATGTACTACAGTCCGGTACAGTAGTCCCATCTTCAGTTAGCTCCAGATCTCGGATTGAGATTGTCCAGGTATTTTGCAAATCAGTTACTGCCCTGATATCCTATAACAGGGATCTGCATGTACATCAGAATGTCGAGATTCCCATCAAAACTTCAGGATGTCTCCAACCCATAAACGCCCTGT</canonical>
            <polymorphic>CTTTGGCGCGATTTTATTTTTATCAGCTGACCCATTTTGGATGACTCTCATAGGAATCGAGATAATTGAGCTCTAACTTGACAGTATGGAGGCCCTTCTATTACAGGTTTTACTCAATTTGTTTACCTCAATAGACCCTGCGGATCTGATGAAAAAAGTCTGATGATATCCTGCAAAAACCGCTGTCACATGATCCAAATCGTCAGTTTTCCGTGGTGTCGACTGAGTCATAATCTTCCCGTTTCCGAGTTGTCCACTGGAATTCAGTCCAAATGGATATGGAGATCCGCGGATGATGGCGATAGTATGGCATGCTCCTGCGGCGATCCGGGTGACATGGGAGCCGATTAGATCGGAGACGGCTGTGGGGTTGGGACGTTTTTCGAGTCTGGAAAATGAGGAAATTGGGATAATAATCATAAAAGCAGCTTCTATGAAAGTATTAGAATACGGTAAATGCTCTAATAGAATATCACCCTATGCGTTCACTTCGAACTTAWTCATCTAGGTTCCTGTCAAAGATATAGCAAAAAAAAATTGTGTATCATAATATCATTGACATTTTATCAGTTGACACATTTTTGATACCTCTTATAGGAACCGAGATAATTGAGCTCAAAGTTGACGGTTGAGATAGGCTTCTATTAGAGGAAACATTAGCTACAGTAATCCGGTAGAAAATGATTAAACTGTAAACCAGATCATCAACCATTTATTAACTAAAGGCTGCCTCGACTCGGAACACAGTAATCCGGAATATCTACAGTCATTCCATAGTAAGTTACAGTAATCTTCACCACAAATCTTATGTAACCGAATGTACTACAGTCCGGTACAGTAGTCCCATCTTCAGTTAGCTCCAGATCTCGGATTGAGATTGTCCAGGTATTTTGCAAATCAGTTACTGCCCTGATATCCTATAACAGGGATCTGCATGTACATCAGAATGTCGAGATTCCCATCAAAACTTCAGGATGTCTCCAACCCATAAACGCCCTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>497 284 188 31</canonical_bands>
                <polymorphic_bands>685 284 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCAGCTTCTATGAAAGTATTAGA</pcr_primer_p1>
		<pcr_primer_p2>ATCATTTTCTACCGGATTACTGT</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>AAGCAGCTTCTATGAAAGTATTAGAATACGGTAAATGCTCTAATAGAATATCACCCTATGCGTTCACTTCGAACTTAATCATCTAGGTTCCTGTCAAAGATATAGCAAAAAAAAATTGTGTATCATAATATCATTGACATTTTATCAGTTGACACATTTTTGATACCTCTTATAGGAACCGAGATAATTGAGCTCAAAGTTGACGGTTGAGATAGGCTTCTATTAGAGGAAACATTAGCTACAGTAATCCGGTAGAAAATGAT</canonical_amplicon>
		<polymorphic_amplicon>AAGCAGCTTCTATGAAAGTATTAGAATACGGTAAATGCTCTAATAGAATATCACCCTATGCGTTCACTTCGAACTTAWTCATCTAGGTTCCTGTCAAAGATATAGCAAAAAAAAATTGTGTATCATAATATCATTGACATTTTATCAGTTGACACATTTTTGATACCTCTTATAGGAACCGAGATAATTGAGCTCAAAGTTGACGGTTGAGATAGGCTTCTATTAGAGGAAACATTAGCTACAGTAATCCGGTAGAAAATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37365</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>229741</contig_pos>
        <strand></strand>
        <context>cgaacttawt[C/T]atctaggttc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTAAATGCTCTAATAGAATATCACCCTATGCGTTCACTTCGAACTTAAT</left_flank>
        <right_flank>ATCTAGGTTCCTGTCAAAGATATAGCAAAAAAAAATTGTGTATCATAATA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGCGCGATTTTATTTTTATCAGCTGACCCATTTTGGATGACTCTCATAGGAATCGAGATAATTGAGCTCTAACTTGACAGTATGGAGGCCCTTCTATTACAGGTTTTACTCAATTTGTTTACCTCAATAGACCCTGCGGATCTGATGAAAAAAGTCTGATGATATCCTGCAAAAACCGCTGTCACATGATCCAAATCGTCAGTTTTCCGTGGTGTCGACTGAGTCATAATCTTCCCGTTTCCGAGTTGTCCACTGGAATTCAGTCCAAATGGATATGGAGATCCGCGGATGATGGCGATAGTATGGCATGCTCCTGCGGCGATCCGGGTGACATGGGAGCCGATTAGATCGGAGACGGCTGTGGGGTTGGGACGTTTTTCGAGTCTGGAAAATGAGGAAATTGGGATAATAATCATAAAAGCAGCTTCTATGAAAGTATTAGAATACGGTAAATGCTCTAATAGAATATCACCCTATGCGTTCACTTCGAACTTAATCATCTAGGTTCCTGTCAAAGATATAGCAAAAAAAAATTGTGTATCATAATATCATTGACATTTTATCAGTTGACACATTTTTGATACCTCTTATAGGAACCGAGATAATTGAGCTCAAAGTTGACGGTTGAGATAGGCTTCTATTAGAGGAAACATTAGCTACAGTAATCCGGTAGAAAATGATTAAACTGTAAACCAGATCATCAACCATTTATTAACTAAAGGCTGCCTCGACTCGGAACACAGTAATCCGGAATATCTACAGTCATTCCATAGTAAGTTACAGTAATCTTCACCACAAATCTTATGTAACCGAATGTACTACAGTCCGGTACAGTAGTCCCATCTTCAGTTAGCTCCAGATCTCGGATTGAGATTGTCCAGGTATTTTGCAAATCAGTTACTGCCCTGATATCCTATAACAGGGATCTGCATGTACATCAGAATGTCGAGATTCCCATCAAAACTTCAGGATGTCTCCAACCCATAAACGCCCTGTAC</canonical>
            <polymorphic>TTGGCGCGATTTTATTTTTATCAGCTGACCCATTTTGGATGACTCTCATAGGAATCGAGATAATTGAGCTCTAACTTGACAGTATGGAGGCCCTTCTATTACAGGTTTTACTCAATTTGTTTACCTCAATAGACCCTGCGGATCTGATGAAAAAAGTCTGATGATATCCTGCAAAAACCGCTGTCACATGATCCAAATCGTCAGTTTTCCGTGGTGTCGACTGAGTCATAATCTTCCCGTTTCCGAGTTGTCCACTGGAATTCAGTCCAAATGGATATGGAGATCCGCGGATGATGGCGATAGTATGGCATGCTCCTGCGGCGATCCGGGTGACATGGGAGCCGATTAGATCGGAGACGGCTGTGGGGTTGGGACGTTTTTCGAGTCTGGAAAATGAGGAAATTGGGATAATAATCATAAAAGCAGCTTCTATGAAAGTATTAGAATACGGTAAATGCTCTAATAGAATATCACCCTATGCGTTCACTTCGAACTTAATYATCTAGGTTCCTGTCAAAGATATAGCAAAAAAAAATTGTGTATCATAATATCATTGACATTTTATCAGTTGACACATTTTTGATACCTCTTATAGGAACCGAGATAATTGAGCTCAAAGTTGACGGTTGAGATAGGCTTCTATTAGAGGAAACATTAGCTACAGTAATCCGGTAGAAAATGATTAAACTGTAAACCAGATCATCAACCATTTATTAACTAAAGGCTGCCTCGACTCGGAACACAGTAATCCGGAATATCTACAGTCATTCCATAGTAAGTTACAGTAATCTTCACCACAAATCTTATGTAACCGAATGTACTACAGTCCGGTACAGTAGTCCCATCTTCAGTTAGCTCCAGATCTCGGATTGAGATTGTCCAGGTATTTTGCAAATCAGTTACTGCCCTGATATCCTATAACAGGGATCTGCATGTACATCAGAATGTCGAGATTCCCATCAAAACTTCAGGATGTCTCCAACCCATAAACGCCCTGTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCAGCTTCTATGAAAGTATTAGA</pcr_primer_p1>
		<pcr_primer_p2>ATCATTTTCTACCGGATTACTGT</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>AAGCAGCTTCTATGAAAGTATTAGAATACGGTAAATGCTCTAATAGAATATCACCCTATGCGTTCACTTCGAACTTAATCATCTAGGTTCCTGTCAAAGATATAGCAAAAAAAAATTGTGTATCATAATATCATTGACATTTTATCAGTTGACACATTTTTGATACCTCTTATAGGAACCGAGATAATTGAGCTCAAAGTTGACGGTTGAGATAGGCTTCTATTAGAGGAAACATTAGCTACAGTAATCCGGTAGAAAATGAT</canonical_amplicon>
		<polymorphic_amplicon>AAGCAGCTTCTATGAAAGTATTAGAATACGGTAAATGCTCTAATAGAATATCACCCTATGCGTTCACTTCGAACTTAATYATCTAGGTTCCTGTCAAAGATATAGCAAAAAAAAATTGTGTATCATAATATCATTGACATTTTATCAGTTGACACATTTTTGATACCTCTTATAGGAACCGAGATAATTGAGCTCAAAGTTGACGGTTGAGATAGGCTTCTATTAGAGGAAACATTAGCTACAGTAATCCGGTAGAAAATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37366</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>229797</contig_pos>
        <strand></strand>
        <context>taatatcatt[G/A]acattttatc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGTTCCTGTCAAAGATATAGCAAAAAAAAATTGTGTATCATAATATCATT</left_flank>
        <right_flank>ACATTTTATCAGTTGACACATTTTTGATACCTCTTATAGGAACCGAGATA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGATAATTGAGCTCTAACTTGACAGTATGGAGGCCCTTCTATTACAGGTTTTACTCAATTTGTTTACCTCAATAGACCCTGCGGATCTGATGAAAAAAGTCTGATGATATCCTGCAAAAACCGCTGTCACATGATCCAAATCGTCAGTTTTCCGTGGTGTCGACTGAGTCATAATCTTCCCGTTTCCGAGTTGTCCACTGGAATTCAGTCCAAATGGATATGGAGATCCGCGGATGATGGCGATAGTATGGCATGCTCCTGCGGCGATCCGGGTGACATGGGAGCCGATTAGATCGGAGACGGCTGTGGGGTTGGGACGTTTTTCGAGTCTGGAAAATGAGGAAATTGGGATAATAATCATAAAAGCAGCTTCTATGAAAGTATTAGAATACGGTAAATGCTCTAATAGAATATCACCCTATGCGTTCACTTCGAACTTAATCATCTAGGTTCCTGTCAAAGATATAGCAAAAAAAAATTGTGTATCATAATATCATTGACATTTTATCAGTTGACACATTTTTGATACCTCTTATAGGAACCGAGATAATTGAGCTCAAAGTTGACGGTTGAGATAGGCTTCTATTAGAGGAAACATTAGCTACAGTAATCCGGTAGAAAATGATTAAACTGTAAACCAGATCATCAACCATTTATTAACTAAAGGCTGCCTCGACTCGGAACACAGTAATCCGGAATATCTACAGTCATTCCATAGTAAGTTACAGTAATCTTCACCACAAATCTTATGTAACCGAATGTACTACAGTCCGGTACAGTAGTCCCATCTTCAGTTAGCTCCAGATCTCGGATTGAGATTGTCCAGGTATTTTGCAAATCAGTTACTGCCCTGATATCCTATAACAGGGATCTGCATGTACATCAGAATGTCGAGATTCCCATCAAAACTTCAGGATGTCTCCAACCCATAAACGCCCTGTACTCCCAACCCTATGAATTTTTTTTCCTAAATTTTTTCATGTGATTTTTATTTTCCAA</canonical>
            <polymorphic>GAGATAATTGAGCTCTAACTTGACAGTATGGAGGCCCTTCTATTACAGGTTTTACTCAATTTGTTTACCTCAATAGACCCTGCGGATCTGATGAAAAAAGTCTGATGATATCCTGCAAAAACCGCTGTCACATGATCCAAATCGTCAGTTTTCCGTGGTGTCGACTGAGTCATAATCTTCCCGTTTCCGAGTTGTCCACTGGAATTCAGTCCAAATGGATATGGAGATCCGCGGATGATGGCGATAGTATGGCATGCTCCTGCGGCGATCCGGGTGACATGGGAGCCGATTAGATCGGAGACGGCTGTGGGGTTGGGACGTTTTTCGAGTCTGGAAAATGAGGAAATTGGGATAATAATCATAAAAGCAGCTTCTATGAAAGTATTAGAATACGGTAAATGCTCTAATAGAATATCACCCTATGCGTTCACTTCGAACTTAATCATCTAGGTTCCTGTCAAAGATATAGCAAAAAAAAATTGTGTATCATAATATCATTRACATTTTATCAGTTGACACATTTTTGATACCTCTTATAGGAACCGAGATAATTGAGCTCAAAGTTGACGGTTGAGATAGGCTTCTATTAGAGGAAACATTAGCTACAGTAATCCGGTAGAAAATGATTAAACTGTAAACCAGATCATCAACCATTTATTAACTAAAGGCTGCCTCGACTCGGAACACAGTAATCCGGAATATCTACAGTCATTCCATAGTAAGTTACAGTAATCTTCACCACAAATCTTATGTAACCGAATGTACTACAGTCCGGTACAGTAGTCCCATCTTCAGTTAGCTCCAGATCTCGGATTGAGATTGTCCAGGTATTTTGCAAATCAGTTACTGCCCTGATATCCTATAACAGGGATCTGCATGTACATCAGAATGTCGAGATTCCCATCAAAACTTCAGGATGTCTCCAACCCATAAACGCCCTGTACTCCCAACCCTATGAATTTTTTTTCCTAAATTTTTTCATGTGATTTTTATTTTCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCAGCTTCTATGAAAGTATTAGA</pcr_primer_p1>
		<pcr_primer_p2>ATCATTTTCTACCGGATTACTGT</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>AAGCAGCTTCTATGAAAGTATTAGAATACGGTAAATGCTCTAATAGAATATCACCCTATGCGTTCACTTCGAACTTAATCATCTAGGTTCCTGTCAAAGATATAGCAAAAAAAAATTGTGTATCATAATATCATTGACATTTTATCAGTTGACACATTTTTGATACCTCTTATAGGAACCGAGATAATTGAGCTCAAAGTTGACGGTTGAGATAGGCTTCTATTAGAGGAAACATTAGCTACAGTAATCCGGTAGAAAATGAT</canonical_amplicon>
		<polymorphic_amplicon>AAGCAGCTTCTATGAAAGTATTAGAATACGGTAAATGCTCTAATAGAATATCACCCTATGCGTTCACTTCGAACTTAATCATCTAGGTTCCTGTCAAAGATATAGCAAAAAAAAATTGTGTATCATAATATCATTRACATTTTATCAGTTGACACATTTTTGATACCTCTTATAGGAACCGAGATAATTGAGCTCAAAGTTGACGGTTGAGATAGGCTTCTATTAGAGGAAACATTAGCTACAGTAATCCGGTAGAAAATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37367</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>229839</contig_pos>
        <strand></strand>
        <context>tcttatagga[A/G]ccgagataat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATCATTGACATTTTATCAGTTGACACATTTTTGATACCTCTTATAGGA</left_flank>
        <right_flank>CCGAGATAATTGAGCTCAAAGTTGACGGTTGAGATAGGCTTCTATTAGAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTACAGGTTTTACTCAATTTGTTTACCTCAATAGACCCTGCGGATCTGATGAAAAAAGTCTGATGATATCCTGCAAAAACCGCTGTCACATGATCCAAATCGTCAGTTTTCCGTGGTGTCGACTGAGTCATAATCTTCCCGTTTCCGAGTTGTCCACTGGAATTCAGTCCAAATGGATATGGAGATCCGCGGATGATGGCGATAGTATGGCATGCTCCTGCGGCGATCCGGGTGACATGGGAGCCGATTAGATCGGAGACGGCTGTGGGGTTGGGACGTTTTTCGAGTCTGGAAAATGAGGAAATTGGGATAATAATCATAAAAGCAGCTTCTATGAAAGTATTAGAATACGGTAAATGCTCTAATAGAATATCACCCTATGCGTTCACTTCGAACTTAATCATCTAGGTTCCTGTCAAAGATATAGCAAAAAAAAATTGTGTATCATAATATCATTGACATTTTATCAGTTGACACATTTTTGATACCTCTTATAGGAACCGAGATAATTGAGCTCAAAGTTGACGGTTGAGATAGGCTTCTATTAGAGGAAACATTAGCTACAGTAATCCGGTAGAAAATGATTAAACTGTAAACCAGATCATCAACCATTTATTAACTAAAGGCTGCCTCGACTCGGAACACAGTAATCCGGAATATCTACAGTCATTCCATAGTAAGTTACAGTAATCTTCACCACAAATCTTATGTAACCGAATGTACTACAGTCCGGTACAGTAGTCCCATCTTCAGTTAGCTCCAGATCTCGGATTGAGATTGTCCAGGTATTTTGCAAATCAGTTACTGCCCTGATATCCTATAACAGGGATCTGCATGTACATCAGAATGTCGAGATTCCCATCAAAACTTCAGGATGTCTCCAACCCATAAACGCCCTGTACTCCCAACCCTATGAATTTTTTTTCCTAAATTTTTTCATGTGATTTTTATTTTCCAATTTCCAACTTTCACTTTTTCCCCTGTTCCGAGCATCACTGTC</canonical>
            <polymorphic>TTACAGGTTTTACTCAATTTGTTTACCTCAATAGACCCTGCGGATCTGATGAAAAAAGTCTGATGATATCCTGCAAAAACCGCTGTCACATGATCCAAATCGTCAGTTTTCCGTGGTGTCGACTGAGTCATAATCTTCCCGTTTCCGAGTTGTCCACTGGAATTCAGTCCAAATGGATATGGAGATCCGCGGATGATGGCGATAGTATGGCATGCTCCTGCGGCGATCCGGGTGACATGGGAGCCGATTAGATCGGAGACGGCTGTGGGGTTGGGACGTTTTTCGAGTCTGGAAAATGAGGAAATTGGGATAATAATCATAAAAGCAGCTTCTATGAAAGTATTAGAATACGGTAAATGCTCTAATAGAATATCACCCTATGCGTTCACTTCGAACTTAATCATCTAGGTTCCTGTCAAAGATATAGCAAAAAAAAATTGTGTATCATAATATCATTGACATTTTATCAGTTGACACATTTTTGATACCTCTTATAGGARCCGAGATAATTGAGCTCAAAGTTGACGGTTGAGATAGGCTTCTATTAGAGGAAACATTAGCTACAGTAATCCGGTAGAAAATGATTAAACTGTAAACCAGATCATCAACCATTTATTAACTAAAGGCTGCCTCGACTCGGAACACAGTAATCCGGAATATCTACAGTCATTCCATAGTAAGTTACAGTAATCTTCACCACAAATCTTATGTAACCGAATGTACTACAGTCCGGTACAGTAGTCCCATCTTCAGTTAGCTCCAGATCTCGGATTGAGATTGTCCAGGTATTTTGCAAATCAGTTACTGCCCTGATATCCTATAACAGGGATCTGCATGTACATCAGAATGTCGAGATTCCCATCAAAACTTCAGGATGTCTCCAACCCATAAACGCCCTGTACTCCCAACCCTATGAATTTTTTTTCCTAAATTTTTTCATGTGATTTTTATTTTCCAATTTCCAACTTTCACTTTTTCCCCTGTTCCGAGCATCACTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGCAGCTTCTATGAAAGTATTAGA</pcr_primer_p1>
		<pcr_primer_p2>ATCATTTTCTACCGGATTACTGT</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>AAGCAGCTTCTATGAAAGTATTAGAATACGGTAAATGCTCTAATAGAATATCACCCTATGCGTTCACTTCGAACTTAATCATCTAGGTTCCTGTCAAAGATATAGCAAAAAAAAATTGTGTATCATAATATCATTGACATTTTATCAGTTGACACATTTTTGATACCTCTTATAGGAACCGAGATAATTGAGCTCAAAGTTGACGGTTGAGATAGGCTTCTATTAGAGGAAACATTAGCTACAGTAATCCGGTAGAAAATGAT</canonical_amplicon>
		<polymorphic_amplicon>AAGCAGCTTCTATGAAAGTATTAGAATACGGTAAATGCTCTAATAGAATATCACCCTATGCGTTCACTTCGAACTTAATCATCTAGGTTCCTGTCAAAGATATAGCAAAAAAAAATTGTGTATCATAATATCATTGACATTTTATCAGTTGACACATTTTTGATACCTCTTATAGGARCCGAGATAATTGAGCTCAAAGTTGACGGTTGAGATAGGCTTCTATTAGAGGAAACATTAGCTACAGTAATCCGGTAGAAAATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37368</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>229926</contig_pos>
        <strand>+</strand>
        <context>GAAAATGATT[A/C]AACTGTAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGCTTCTATTAGAGGAAACATTAGCTACAGTAATCCGGTAGAAAATGATT</left_flank>
        <right_flank>AACTGTAAACCAGATCATCAACCATTTATTAACTAAAGGCTGCCTCGACT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATGATCCAAATCGTCAGTTTTCCGTGGTGTCGACTGAGTCATAATCTTCCCGTTTCCGAGTTGTCCACTGGAATTCAGTCCAAATGGATATGGAGATCCGCGGATGATGGCGATAGTATGGCATGCTCCTGCGGCGATCCGGGTGACATGGGAGCCGATTAGATCGGAGACGGCTGTGGGGTTGGGACGTTTTTCGAGTCTGGAAAATGAGGAAATTGGGATAATAATCATAAAAGCAGCTTCTATGAAAGTATTAGAATACGGTAAATGCTCTAATAGAATATCACCCTATGCGTTCACTTCGAACTTAATCATCTAGGTTCCTGTCAAAGATATAGCAAAAAAAAATTGTGTATCATAATATCATTGACATTTTATCAGTTGACACATTTTTGATACCTCTTATAGGAACCGAGATAATTGAGCTCAAAGTTGACGGTTGAGATAGGCTTCTATTAGAGGAAACATTAGCTACAGTAATCCGGTAGAAAATGATTAAACTGTAAACCAGATCATCAACCATTTATTAACTAAAGGCTGCCTCGACTCGGAACACAGTAATCCGGAATATCTACAGTCATTCCATAGTAAGTTACAGTAATCTTCACCACAAATCTTATGTAACCGAATGTACTACAGTCCGGTACAGTAGTCCCATCTTCAGTTAGCTCCAGATCTCGGATTGAGATTGTCCAGGTATTTTGCAAATCAGTTACTGCCCTGATATCCTATAACAGGGATCTGCATGTACATCAGAATGTCGAGATTCCCATCAAAACTTCAGGATGTCTCCAACCCATAAACGCCCTGTACTCCCAACCCTATGAATTTTTTTTCCTAAATTTTTTCATGTGATTTTTATTTTCCAATTTCCAACTTTCACTTTTTCCCCTGTTCCGAGCATCACTGTCAATCAATCTGTGAAAAAATTGGGCTCCAAATATGTTCGTCTTTAGAATCCCATCCCATTTTAGACGTCAATCAATCAAGAGCATTGT</canonical>
            <polymorphic>ACATGATCCAAATCGTCAGTTTTCCGTGGTGTCGACTGAGTCATAATCTTCCCGTTTCCGAGTTGTCCACTGGAATTCAGTCCAAATGGATATGGAGATCCGCGGATGATGGCGATAGTATGGCATGCTCCTGCGGCGATCCGGGTGACATGGGAGCCGATTAGATCGGAGACGGCTGTGGGGTTGGGACGTTTTTCGAGTCTGGAAAATGAGGAAATTGGGATAATAATCATAAAAGCAGCTTCTATGAAAGTATTAGAATACGGTAAATGCTCTAATAGAATATCACCCTATGCGTTCACTTCGAACTTAATCATCTAGGTTCCTGTCAAAGATATAGCAAAAAAAAATTGTGTATCATAATATCATTGACATTTTATCAGTTGACACATTTTTGATACCTCTTATAGGAACCGAGATAATTGAGCTCAAAGTTGACGGTTGAGATAGGCTTCTATTAGAGGAAACATTAGCTACAGTAATCCGGTAGAAAATGATTMAACTGTAAACCAGATCATCAACCATTTATTAACTAAAGGCTGCCTCGACTCGGAACACAGTAATCCGGAATATCTACAGTCATTCCATAGTAAGTTACAGTAATCTTCACCACAAATCTTATGTAACCGAATGTACTACAGTCCGGTACAGTAGTCCCATCTTCAGTTAGCTCCAGATCTCGGATTGAGATTGTCCAGGTATTTTGCAAATCAGTTACTGCCCTGATATCCTATAACAGGGATCTGCATGTACATCAGAATGTCGAGATTCCCATCAAAACTTCAGGATGTCTCCAACCCATAAACGCCCTGTACTCCCAACCCTATGAATTTTTTTTCCTAAATTTTTTCATGTGATTTTTATTTTCCAATTTCCAACTTTCACTTTTTCCCCTGTTCCGAGCATCACTGTCAATCAATCTGTGAAAAAATTGGGCTCCAAATATGTTCGTCTTTAGAATCCCATCCCATTTTAGACGTCAATCAATCAAGAGCATTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>471 310 188 31</canonical_bands>
                <polymorphic_bands>471 310 219</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCAGCTTCTATGAAAGTATTAGA</pcr_primer_p1>
		<pcr_primer_p2>GGATTACTGTGTTCCGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>331</pcr_amplicon_size>
		<canonical_amplicon>AAGCAGCTTCTATGAAAGTATTAGAATACGGTAAATGCTCTAATAGAATATCACCCTATGCGTTCACTTCGAACTTAATCATCTAGGTTCCTGTCAAAGATATAGCAAAAAAAAATTGTGTATCATAATATCATTGACATTTTATCAGTTGACACATTTTTGATACCTCTTATAGGAACCGAGATAATTGAGCTCAAAGTTGACGGTTGAGATAGGCTTCTATTAGAGGAAACATTAGCTACAGTAATCCGGTAGAAAATGATTAAACTGTAAACCAGATCATCAACCATTTATTAACTAAAGGCTGCCTCGACTCGGAACACAGTAATCC</canonical_amplicon>
		<polymorphic_amplicon>AAGCAGCTTCTATGAAAGTATTAGAATACGGTAAATGCTCTAATAGAATATCACCCTATGCGTTCACTTCGAACTTAATCATCTAGGTTCCTGTCAAAGATATAGCAAAAAAAAATTGTGTATCATAATATCATTGACATTTTATCAGTTGACACATTTTTGATACCTCTTATAGGAACCGAGATAATTGAGCTCAAAGTTGACGGTTGAGATAGGCTTCTATTAGAGGAAACATTAGCTACAGTAATCCGGTAGAAAATGATTMAACTGTAAACCAGATCATCAACCATTTATTAACTAAAGGCTGCCTCGACTCGGAACACAGTAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37369</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>259061</contig_pos>
        <strand>+</strand>
        <context>GGGGAAGGAA[C/G]ATGCACACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAAAGCGCTAGAGAGAGCGATGACCAAAGAAAGAACTGGCGGGGAAGGAA</left_flank>
        <right_flank>ATGCACACAATAAGAAAGGAAATGAGGAGGTGGTGGTGAGCTCCCCTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCCAGAAGCTTCTACACCACGATATGGCGTTTTTTGATTCTCATGTAGGTGATAAGATTTCTTATCATTAAAAAAATCAAAAATAAAAAAGCTTCTTGGGATAGGTTACAGTAGCCATAGAATATACTGAACATGGCTTGGAAAGGACTACGGTAACTGTAGCTAGAGTAGCTAGCTAACTGCAAGGCTATTCTAGACTAGATCAAAAAGCACAAGAATGGCTATGAAGACTACTGTAGTAGTATAGAAAATGCTCTTCAAAATAAGAATGTGCAAAAGAGTGAGCGATGATCTTGAGATAGGTTACGGTAGCTAGAGCACAAGACAAAACTACTGTAGTCGAAGCAAAAACGGGCTCTTCAAAACATGGAAGCACATTAGGCTACGGTAGCTGTGCGCTGATTCCTAGATTCCCAGAATCGCTATGAAGACTACTGTAGTCGTATAGAAAGCGCTAGAGAGAGCGATGACCAAAGAAAGAACTGGCGGGGAAGGAAAATGCACACAATAAGAAAGGAAATGAGGAGGTGGTGGTGAGCTCCCCTTGATTTCTTGTGCCTTTTCTTGTGCTTTGTCGAAAAGGAAAAAGGACGAAATTGTGGTAATAAAACGAAATGGACACTCCTTCCCTTCGTTTCCACTTTTTTAGAACAACAAGATTGGTTGGGGTTTTGGAAAATGAAAGTGAAGAGGACTCTTCGAGGAGCTGGGAGGAGCAAAGGAGAGGGAACAAATAGGCTCCGCCCATTTGAAGATGTAGGGAAAAAATTATAAGAAAGAATCTGAAAATCGAAGGATTGAAATAAGGAAATTCGGAATTCCAAAATATAGAAGTCTAGTTTTTCTATGAAAAAATTGAAAAATCTAGAATAAAAATATTTTTTTGGAATCTGGAAATCTGGAAATGGAAATCTAGAAGTATAGAAAAATTAGAAATTTTTAGAGAATACAAATCCGGAAATTTAGAAATTTCGGGAACTAAAAATCTAGGAATCGTC</canonical>
            <polymorphic>GTTCCAGAAGCTTCTACACCACGATATGGCGTTTTTTGATTCTCATGTAGGTGATAAGATTTCTTATCATTAAAAAAATCAAAAATAAAAAAGCTTCTTGGGATAGGTTACAGTAGCCATAGAATATACTGAACATGGCTTGGAAAGGACTACGGTAACTGTAGCTAGAGTAGCTAGCTAACTGCAAGGCTATTCTAGACTAGATCAAAAAGCACAAGAATGGCTATGAAGACTACTGTAGTAGTATAGAAAATGCTCTTCAAAATAAGAATGTGCAAAAGAGTGAGCGATGATCTTGAGATAGGTTACGGTAGCTAGAGCACAAGACAAAACTACTGTAGTCGAAGCAAAAACGGGCTCTTCAAAACATGGAAGCACATTAGGCTACGGTAGCTGTGCGCTGATTCCTAGATTCCCAGAATCGCTATGAAGACTACTGTAGTCGTATAGAAAGCGCTAGAGAGAGCGATGACCAAAGAAAGAACTGGCGGGGAAGGAASATGCACACAATAAGAAAGGAAATGAGGAGGTGGTGGTGAGCTCCCCTTGATTTCTTGTGCCTTTTCTTGTGCTTTGTCGAAAAGGAAAAAGGACGAAATTGTGGTAATAAAACGAAATGGACACTCCTTCCCTTCGTTTCCACTTTTTTAGAACAACAAGATTGGTTGGGGTTTTGGAAAATGAAAGTGAAGAGGACTCTTCGAGGAGCTGGGAGGAGCAAAGGAGAGGGAACAAATAGGCTCCGCCCATTTGAAGATGTAGGGAAAAAATTATAAGAAAGAATCTGAAAATCGAAGGATTGAAATAAGGAAATTCGGAATTCCAAAATATAGAAGTCTAGTTTTTCTATGAAAAAATTGAAAAATCTAGAATAAAAATATTTTTTTGGAATCTGGAAATCTGGAAATGGAAATCTAGAAGTATAGAAAAATTAGAAATTTTTAGAGAATACAAATCCGGAAATTTAGAAATTTCGGGAACTAAAAATCTAGGAATCGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAATCGCTATGAAGACTACTG</pcr_primer_p1>
		<pcr_primer_p2>CAACCAATCTTGTTGTTCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAGAATCGCTATGAAGACTACTGTAGTCGTATAGAAAGCGCTAGAGAGAGCGATGACCAAAGAAAGAACTGGCGGGGAAGGAAAATGCACACAATAAGAAAGGAAATGAGGAGGTGGTGGTGAGCTCCCCTTGATTTCTTGTGCCTTTTCTTGTGCTTTGTCGAAAAGGAAAAAGGACGAAATTGTGGTAATAAAACGAAATGGACACTCCTTCCCTTCGTTTCCACTTTTTTAGAACAACAAGATTGGTTG</canonical_amplicon>
		<polymorphic_amplicon>CAGAATCGCTATGAAGACTACTGTAGTCGTATAGAAAGCGCTAGAGAGAGCGATGACCAAAGAAAGAACTGGCGGGGAAGGAASATGCACACAATAAGAAAGGAAATGAGGAGGTGGTGGTGAGCTCCCCTTGATTTCTTGTGCCTTTTCTTGTGCTTTGTCGAAAAGGAAAAAGGACGAAATTGTGGTAATAAAACGAAATGGACACTCCTTCCCTTCGTTTCCACTTTTTTAGAACAACAAGATTGGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37370</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>259528</contig_pos>
        <strand>+</strand>
        <context>CCGGAAATTT[A/T]RAAATTTCGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAAGTATAGAAAAATTAGAAATTTTTAGAGAATACAAATCCGGAAATTT</left_flank>
        <right_flank>GAAATTTCGGGAACTAAAAATCTAGGAATCGTCGGTGGTGGCCGTAGCCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGACCAAAGAAAGAACTGGCGGGGAAGGAAAATGCACACAATAAGAAAGGAAATGAGGAGGTGGTGGTGAGCTCCCCTTGATTTCTTGTGCCTTTTCTTGTGCTTTGTCGAAAAGGAAAAAGGACGAAATTGTGGTAATAAAACGAAATGGACACTCCTTCCCTTCGTTTCCACTTTTTTAGAACAACAAGATTGGTTGGGGTTTTGGAAAATGAAAGTGAAGAGGACTCTTCGAGGAGCTGGGAGGAGCAAAGGAGAGGGAACAAATAGGCTCCGCCCATTTGAAGATGTAGGGAAAAAATTATAAGAAAGAATCTGAAAATCGAAGGATTGAAATAAGGAAATTCGGAATTCCAAAATATAGAAGTCTAGTTTTTCTATGAAAAAATTGAAAAATCTAGAATAAAAATATTTTTTTGGAATCTGGAAATCTGGAAATGGAAATCTAGAAGTATAGAAAAATTAGAAATTTTTAGAGAATACAAATCCGGAAATTTAGAAATTTCGGGAACTAAAAATCTAGGAATCGTCGGTGGTGGCCGTAGCCGAAGGTCCCACAACGATAACTACAGTAACCTAGAATTTCGAATTTTCTGTTATTTTTTCCCCAAAAAAGGCGAAAAATTAGTAATAAAACAGACGGAAACTGAACGAAAATCAAGAAAAGGAATCGATTTTTTCTTCGATTTTTCGCAAAAGTTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATTTTGATTAAAATTTCAGAATATGTCAAGGATATCCTATCTAGACATCCCTGAAAATTTTAGAACACGCTCGTCAATTTCAGCAGCGTTATATCAGTCCAAAGTTTTAGTACTGAAATCCGTTGATTTGCATGCTTTACCACACATTTCATCCCCGAAATCCCTTTAAAAGGAGTTTGAAGAGGGCCTGACATTTAAGCGCCTTTTGAACCAATAGTAAATGTCGACGGCGTGGTGTCGGGGATGTGGTGGGCGCCAGTAGTC</canonical>
            <polymorphic>GATGACCAAAGAAAGAACTGGCGGGGAAGGAAAATGCACACAATAAGAAAGGAAATGAGGAGGTGGTGGTGAGCTCCCCTTGATTTCTTGTGCCTTTTCTTGTGCTTTGTCGAAAAGGAAAAAGGACGAAATTGTGGTAATAAAACGAAATGGACACTCCTTCCCTTCGTTTCCACTTTTTTAGAACAACAAGATTGGTTGGGGTTTTGGAAAATGAAAGTGAAGAGGACTCTTCGAGGAGCTGGGAGGAGCAAAGGAGAGGGAACAAATAGGCTCCGCCCATTTGAAGATGTAGGGAAAAAATTATAAGAAAGAATCTGAAAATCGAAGGATTGAAATAAGGAAATTCGGAATTCCAAAATATAGAAGTCTAGTTTTTCTATGAAAAAATTGAAAAATCTAGAATAAAAATATTTTTTTGGAATCTGGAAATCTGGAAATGGAAATCTAGAAGTATAGAAAAATTAGAAATTTTTAGAGAATACAAATCCGGAAATTTWGAAATTTCGGGAACTAAAAATCTAGGAATCGTCGGTGGTGGCCGTAGCCGAAGGTCCCACAACGATAACTACAGTAACCTAGAATTTCGAATTTTCTGTTATTTTTTCCCCAAAAAAGGCGAAAAATTAGTAATAAAACAGACGGAAACTGAACGAAAATCAAGAAAAGGAATCGATTTTTTCTTCGATTTTTCGCAAAAGTTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATTTTGATTAAAATTTCAGAATATGTCAAGGATATCCTATCTAGACATCCCTGAAAATTTTAGAACACGCTCGTCAATTTCAGCAGCGTTATATCAGTCCAAAGTTTTAGTACTGAAATCCGTTGATTTGCATGCTTTACCACACATTTCATCCCCGAAATCCCTTTAAAAGGAGTTTGAAGAGGGCCTGACATTTAAGCGCCTTTTGAACCAATAGTAAATGTCGACGGCGTGGTGTCGGGGATGTGGTGGGCGCCAGTAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTGGAAATGGAAATCTAGAAG</pcr_primer_p1>
		<pcr_primer_p2>AAAATCCAAACTGACGAGGT</pcr_primer_p2>
		<pcr_amplicon_size>310</pcr_amplicon_size>
		<canonical_amplicon>ATCTGGAAATGGAAATCTAGAAGTATAGAAAAATTAGAAATTTTTAGAGAATACAAATCCGGAAATTTAGAAATTTCGGGAACTAAAAATCTAGGAATCGTCGGTGGTGGCCGTAGCCGAAGGTCCCACAACGATAACTACAGTAACCTAGAATTTCGAATTTTCTGTTATTTTTTCCCCAAAAAAGGCGAAAAATTAGTAATAAAACAGACGGAAACTGAACGAAAATCAAGAAAAGGAATCGATTTTTTCTTCGATTTTTCGCAAAAGTTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATTTT</canonical_amplicon>
		<polymorphic_amplicon>ATCTGGAAATGGAAATCTAGAAGTATAGAAAAATTAGAAATTTTTAGAGAATACAAATCCGGAAATTTWGAAATTTCGGGAACTAAAAATCTAGGAATCGTCGGTGGTGGCCGTAGCCGAAGGTCCCACAACGATAACTACAGTAACCTAGAATTTCGAATTTTCTGTTATTTTTTCCCCAAAAAAGGCGAAAAATTAGTAATAAAACAGACGGAAACTGAACGAAAATCAAGAAAAGGAATCGATTTTTTCTTCGATTTTTCGCAAAAGTTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37371</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>259529</contig_pos>
        <strand>+</strand>
        <context>CGGAAATTTW[A/G]AAATTTCGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGTATAGAAAAATTAGAAATTTTTAGAGAATACAAATCCGGAAATTTA</left_flank>
        <right_flank>AAATTTCGGGAACTAAAAATCTAGGAATCGTCGGTGGTGGCCGTAGCCGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGACCAAAGAAAGAACTGGCGGGGAAGGAAAATGCACACAATAAGAAAGGAAATGAGGAGGTGGTGGTGAGCTCCCCTTGATTTCTTGTGCCTTTTCTTGTGCTTTGTCGAAAAGGAAAAAGGACGAAATTGTGGTAATAAAACGAAATGGACACTCCTTCCCTTCGTTTCCACTTTTTTAGAACAACAAGATTGGTTGGGGTTTTGGAAAATGAAAGTGAAGAGGACTCTTCGAGGAGCTGGGAGGAGCAAAGGAGAGGGAACAAATAGGCTCCGCCCATTTGAAGATGTAGGGAAAAAATTATAAGAAAGAATCTGAAAATCGAAGGATTGAAATAAGGAAATTCGGAATTCCAAAATATAGAAGTCTAGTTTTTCTATGAAAAAATTGAAAAATCTAGAATAAAAATATTTTTTTGGAATCTGGAAATCTGGAAATGGAAATCTAGAAGTATAGAAAAATTAGAAATTTTTAGAGAATACAAATCCGGAAATTTAGAAATTTCGGGAACTAAAAATCTAGGAATCGTCGGTGGTGGCCGTAGCCGAAGGTCCCACAACGATAACTACAGTAACCTAGAATTTCGAATTTTCTGTTATTTTTTCCCCAAAAAAGGCGAAAAATTAGTAATAAAACAGACGGAAACTGAACGAAAATCAAGAAAAGGAATCGATTTTTTCTTCGATTTTTCGCAAAAGTTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATTTTGATTAAAATTTCAGAATATGTCAAGGATATCCTATCTAGACATCCCTGAAAATTTTAGAACACGCTCGTCAATTTCAGCAGCGTTATATCAGTCCAAAGTTTTAGTACTGAAATCCGTTGATTTGCATGCTTTACCACACATTTCATCCCCGAAATCCCTTTAAAAGGAGTTTGAAGAGGGCCTGACATTTAAGCGCCTTTTGAACCAATAGTAAATGTCGACGGCGTGGTGTCGGGGATGTGGTGGGCGCCAGTAGTCA</canonical>
            <polymorphic>ATGACCAAAGAAAGAACTGGCGGGGAAGGAAAATGCACACAATAAGAAAGGAAATGAGGAGGTGGTGGTGAGCTCCCCTTGATTTCTTGTGCCTTTTCTTGTGCTTTGTCGAAAAGGAAAAAGGACGAAATTGTGGTAATAAAACGAAATGGACACTCCTTCCCTTCGTTTCCACTTTTTTAGAACAACAAGATTGGTTGGGGTTTTGGAAAATGAAAGTGAAGAGGACTCTTCGAGGAGCTGGGAGGAGCAAAGGAGAGGGAACAAATAGGCTCCGCCCATTTGAAGATGTAGGGAAAAAATTATAAGAAAGAATCTGAAAATCGAAGGATTGAAATAAGGAAATTCGGAATTCCAAAATATAGAAGTCTAGTTTTTCTATGAAAAAATTGAAAAATCTAGAATAAAAATATTTTTTTGGAATCTGGAAATCTGGAAATGGAAATCTAGAAGTATAGAAAAATTAGAAATTTTTAGAGAATACAAATCCGGAAATTTARAAATTTCGGGAACTAAAAATCTAGGAATCGTCGGTGGTGGCCGTAGCCGAAGGTCCCACAACGATAACTACAGTAACCTAGAATTTCGAATTTTCTGTTATTTTTTCCCCAAAAAAGGCGAAAAATTAGTAATAAAACAGACGGAAACTGAACGAAAATCAAGAAAAGGAATCGATTTTTTCTTCGATTTTTCGCAAAAGTTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATTTTGATTAAAATTTCAGAATATGTCAAGGATATCCTATCTAGACATCCCTGAAAATTTTAGAACACGCTCGTCAATTTCAGCAGCGTTATATCAGTCCAAAGTTTTAGTACTGAAATCCGTTGATTTGCATGCTTTACCACACATTTCATCCCCGAAATCCCTTTAAAAGGAGTTTGAAGAGGGCCTGACATTTAAGCGCCTTTTGAACCAATAGTAAATGTCGACGGCGTGGTGTCGGGGATGTGGTGGGCGCCAGTAGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTGGAAATGGAAATCTAGAAG</pcr_primer_p1>
		<pcr_primer_p2>AAAATCCAAACTGACGAGGT</pcr_primer_p2>
		<pcr_amplicon_size>310</pcr_amplicon_size>
		<canonical_amplicon>ATCTGGAAATGGAAATCTAGAAGTATAGAAAAATTAGAAATTTTTAGAGAATACAAATCCGGAAATTTAGAAATTTCGGGAACTAAAAATCTAGGAATCGTCGGTGGTGGCCGTAGCCGAAGGTCCCACAACGATAACTACAGTAACCTAGAATTTCGAATTTTCTGTTATTTTTTCCCCAAAAAAGGCGAAAAATTAGTAATAAAACAGACGGAAACTGAACGAAAATCAAGAAAAGGAATCGATTTTTTCTTCGATTTTTCGCAAAAGTTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATTTT</canonical_amplicon>
		<polymorphic_amplicon>ATCTGGAAATGGAAATCTAGAAGTATAGAAAAATTAGAAATTTTTAGAGAATACAAATCCGGAAATTTARAAATTTCGGGAACTAAAAATCTAGGAATCGTCGGTGGTGGCCGTAGCCGAAGGTCCCACAACGATAACTACAGTAACCTAGAATTTCGAATTTTCTGTTATTTTTTCCCCAAAAAAGGCGAAAAATTAGTAATAAAACAGACGGAAACTGAACGAAAATCAAGAAAAGGAATCGATTTTTTCTTCGATTTTTCGCAAAAGTTTTACAAGGGAACGACAACACCTCGTCAGTTTGGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37372</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>288329</contig_pos>
        <strand>+</strand>
        <context>AAGAGTCTAC[C/T]AATATCTCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTCATACTCTGAAACACCTGCTCCTATTGTATCCTGGGAAAGAGTCTAC</left_flank>
        <right_flank>AATATCTCATCTTTAAACCATCAATATTAGGACTCCAATCGGGGTGCTTA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTTTATTGAATAGACAATAATCCTAGTCATAAATCTCTTACTATTGGAGTATTGACATATGCATAAACATGACTGCCTTCATATAGTCATCTTTAATTGCTTTTGTTTTGTTCCGGTACAGTGTCATGTCATACTCTGAAACACCTGCTCCTATTGTATCCTGGGAAAGAGTCTACCAATATCTCATCTTTAAACCATCAATATTAGGACTCCAATCGGGGTGCTTACGTGGACTAGCCAGATAACAATGTGAAGACAATGTGGGCAGAAAACTAGGTACCTAAAAAAAATAACAAAAATGAATTATTCTTATACAAGTAGATATCTAAAACAGTTTCGAAAGTGATAGATGAATGGAGAATTCATCACATATGCAGTAGTTCCAAGAATCCATTCTGGTCCCTGTAAAAGATATCAGAAAATAAATAATAATCAAATTATTTACAATGTTACGATGAATGTTTTATCAGTTTACTACTTCTTGAAACCTCTTTCAGGAAATTAGATATATGAGCTCAAGGAATTGGGAATGAAAATATCTACATTATCATAAATCCTTTACAACACCTTGAGTATCTTTTCTGTGCGTTTACAATTTTTCGGTGACAGTAAGTTGTTTGTTACATATCATTTTAGTTTGGGTTCCCCATTGTTCTGAAAATATATTTTTCAAAAAT</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTTTATTGAATAGACAATAATCCTAGTCATAAATCTCTTACTATTGGAGTATTGACATATGCATAAACATGACTGCCTTCATATAGTCATCTTTAATTGCTTTTGTTTTGTTCCGGTACAGTGTCATGTCATACTCTGAAACACCTGCTCCTATTGTATCCTGGGAAAGAGTCTACYAATATCTCATCTTTAAACCATCAATATTAGGACTCCAATCGGGGTGCTTACGTGGACTAGCCAGATAACAATGTGAAGACAATGTGGGCAGAAAACTAGGTACCTAAAAAAAATAACAAAAATGAATTATTCTTATACAAGTAGATATCTAAAACAGTTTCGAAAGTGATAGATGAATGGAGAATTCATCACATATGCAGTAGTTCCAAGAATCCATTCTGGTCCCTGTAAAAGATATCAGAAAATAAATAATAATCAAATTATTTACAATGTTACGATGAATGTTTTATCAGTTTACTACTTCTTGAAACCTCTTTCAGGAAATTAGATATATGAGCTCAAGGAATTGGGAATGAAAATATCTACATTATCATAAATCCTTTACAACACCTTGAGTATCTTTTCTGTGCGTTTACAATTTTTCGGTGACAGTAAGTTGTTTGTTACATATCATTTTAGTTTGGGTTCCCCATTGTTCTGAAAATATATTTTTCAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTCATGTCATACTCTGAAACA</pcr_primer_p1>
		<pcr_primer_p2>ATGAATTCTCCATTCATCTATCA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTGTCATGTCATACTCTGAAACACCTGCTCCTATTGTATCCTGGGAAAGAGTCTACCAATATCTCATCTTTAAACCATCAATATTAGGACTCCAATCGGGGTGCTTACGTGGACTAGCCAGATAACAATGTGAAGACAATGTGGGCAGAAAACTAGGTACCTAAAAAAAATAACAAAAATGAATTATTCTTATACAAGTAGATATCTAAAACAGTTTCGAAAGTGATAGATGAATGGAGAATTCAT</canonical_amplicon>
		<polymorphic_amplicon>GTGTCATGTCATACTCTGAAACACCTGCTCCTATTGTATCCTGGGAAAGAGTCTACYAATATCTCATCTTTAAACCATCAATATTAGGACTCCAATCGGGGTGCTTACGTGGACTAGCCAGATAACAATGTGAAGACAATGTGGGCAGAAAACTAGGTACCTAAAAAAAATAACAAAAATGAATTATTCTTATACAAGTAGATATCTAAAACAGTTTCGAAAGTGATAGATGAATGGAGAATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37373</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>288345</contig_pos>
        <strand>+</strand>
        <context>CTCATCTTTA[A/T]ACCATCAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCTGCTCCTATTGTATCCTGGGAAAGAGTCTACCAATATCTCATCTTTA</left_flank>
        <right_flank>ACCATCAATATTAGGACTCCAATCGGGGTGCTTACGTGGACTAGCCAGAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTTTATTGAATAGACAATAATCCTAGTCATAAATCTCTTACTATTGGAGTATTGACATATGCATAAACATGACTGCCTTCATATAGTCATCTTTAATTGCTTTTGTTTTGTTCCGGTACAGTGTCATGTCATACTCTGAAACACCTGCTCCTATTGTATCCTGGGAAAGAGTCTACCAATATCTCATCTTTAAACCATCAATATTAGGACTCCAATCGGGGTGCTTACGTGGACTAGCCAGATAACAATGTGAAGACAATGTGGGCAGAAAACTAGGTACCTAAAAAAAATAACAAAAATGAATTATTCTTATACAAGTAGATATCTAAAACAGTTTCGAAAGTGATAGATGAATGGAGAATTCATCACATATGCAGTAGTTCCAAGAATCCATTCTGGTCCCTGTAAAAGATATCAGAAAATAAATAATAATCAAATTATTTACAATGTTACGATGAATGTTTTATCAGTTTACTACTTCTTGAAACCTCTTTCAGGAAATTAGATATATGAGCTCAAGGAATTGGGAATGAAAATATCTACATTATCATAAATCCTTTACAACACCTTGAGTATCTTTTCTGTGCGTTTACAATTTTTCGGTGACAGTAAGTTGTTTGTTACATATCATTTTAGTTTGGGTTCCCCATTGTTCTGAAAATATATTTTTCAAAAATATGCTGTCAGAAACGA</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTTTATTGAATAGACAATAATCCTAGTCATAAATCTCTTACTATTGGAGTATTGACATATGCATAAACATGACTGCCTTCATATAGTCATCTTTAATTGCTTTTGTTTTGTTCCGGTACAGTGTCATGTCATACTCTGAAACACCTGCTCCTATTGTATCCTGGGAAAGAGTCTACCAATATCTCATCTTTAWACCATCAATATTAGGACTCCAATCGGGGTGCTTACGTGGACTAGCCAGATAACAATGTGAAGACAATGTGGGCAGAAAACTAGGTACCTAAAAAAAATAACAAAAATGAATTATTCTTATACAAGTAGATATCTAAAACAGTTTCGAAAGTGATAGATGAATGGAGAATTCATCACATATGCAGTAGTTCCAAGAATCCATTCTGGTCCCTGTAAAAGATATCAGAAAATAAATAATAATCAAATTATTTACAATGTTACGATGAATGTTTTATCAGTTTACTACTTCTTGAAACCTCTTTCAGGAAATTAGATATATGAGCTCAAGGAATTGGGAATGAAAATATCTACATTATCATAAATCCTTTACAACACCTTGAGTATCTTTTCTGTGCGTTTACAATTTTTCGGTGACAGTAAGTTGTTTGTTACATATCATTTTAGTTTGGGTTCCCCATTGTTCTGAAAATATATTTTTCAAAAATATGCTGTCAGAAACGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>503 400 97</canonical_bands>
                <polymorphic_bands>600 400</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGTCATGTCATACTCTGAAACA</pcr_primer_p1>
		<pcr_primer_p2>ATGAATTCTCCATTCATCTATCA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTGTCATGTCATACTCTGAAACACCTGCTCCTATTGTATCCTGGGAAAGAGTCTACCAATATCTCATCTTTAAACCATCAATATTAGGACTCCAATCGGGGTGCTTACGTGGACTAGCCAGATAACAATGTGAAGACAATGTGGGCAGAAAACTAGGTACCTAAAAAAAATAACAAAAATGAATTATTCTTATACAAGTAGATATCTAAAACAGTTTCGAAAGTGATAGATGAATGGAGAATTCAT</canonical_amplicon>
		<polymorphic_amplicon>GTGTCATGTCATACTCTGAAACACCTGCTCCTATTGTATCCTGGGAAAGAGTCTACCAATATCTCATCTTTAWACCATCAATATTAGGACTCCAATCGGGGTGCTTACGTGGACTAGCCAGATAACAATGTGAAGACAATGTGGGCAGAAAACTAGGTACCTAAAAAAAATAACAAAAATGAATTATTCTTATACAAGTAGATATCTAAAACAGTTTCGAAAGTGATAGATGAATGGAGAATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37374</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>288418</contig_pos>
        <strand>+</strand>
        <context>ACAATGTGGG[C/T]AGAAAACTAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGGGGTGCTTACGTGGACTAGCCAGATAACAATGTGAAGACAATGTGGG</left_flank>
        <right_flank>AGAAAACTAGGTACCTAAAAAAAATAACAAAAATGAATTATTCTTATACA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTTTATTGAATAGACAATAATCCTAGTCATAAATCTCTTACTATTGGAGTATTGACATATGCATAAACATGACTGCCTTCATATAGTCATCTTTAATTGCTTTTGTTTTGTTCCGGTACAGTGTCATGTCATACTCTGAAACACCTGCTCCTATTGTATCCTGGGAAAGAGTCTACCAATATCTCATCTTTAAACCATCAATATTAGGACTCCAATCGGGGTGCTTACGTGGACTAGCCAGATAACAATGTGAAGACAATGTGGGCAGAAAACTAGGTACCTAAAAAAAATAACAAAAATGAATTATTCTTATACAAGTAGATATCTAAAACAGTTTCGAAAGTGATAGATGAATGGAGAATTCATCACATATGCAGTAGTTCCAAGAATCCATTCTGGTCCCTGTAAAAGATATCAGAAAATAAATAATAATCAAATTATTTACAATGTTACGATGAATGTTTTATCAGTTTACTACTTCTTGAAACCTCTTTCAGGAAATTAGATATATGAGCTCAAGGAATTGGGAATGAAAATATCTACATTATCATAAATCCTTTACAACACCTTGAGTATCTTTTCTGTGCGTTTACAATTTTTCGGTGACAGTAAGTTGTTTGTTACATATCATTTTAGTTTGGGTTCCCCATTGTTCTGAAAATATATTTTTCAAAAATATGCTGTCAGAAACGAGTGAAGTAACAAACTCAAAGTAAACAACAGAAATTTCATTTTCACTGCAACTTTAGAAAATTTTCAATTTATC</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTTTATTGAATAGACAATAATCCTAGTCATAAATCTCTTACTATTGGAGTATTGACATATGCATAAACATGACTGCCTTCATATAGTCATCTTTAATTGCTTTTGTTTTGTTCCGGTACAGTGTCATGTCATACTCTGAAACACCTGCTCCTATTGTATCCTGGGAAAGAGTCTACCAATATCTCATCTTTAAACCATCAATATTAGGACTCCAATCGGGGTGCTTACGTGGACTAGCCAGATAACAATGTGAAGACAATGTGGGYAGAAAACTAGGTACCTAAAAAAAATAACAAAAATGAATTATTCTTATACAAGTAGATATCTAAAACAGTTTCGAAAGTGATAGATGAATGGAGAATTCATCACATATGCAGTAGTTCCAAGAATCCATTCTGGTCCCTGTAAAAGATATCAGAAAATAAATAATAATCAAATTATTTACAATGTTACGATGAATGTTTTATCAGTTTACTACTTCTTGAAACCTCTTTCAGGAAATTAGATATATGAGCTCAAGGAATTGGGAATGAAAATATCTACATTATCATAAATCCTTTACAACACCTTGAGTATCTTTTCTGTGCGTTTACAATTTTTCGGTGACAGTAAGTTGTTTGTTACATATCATTTTAGTTTGGGTTCCCCATTGTTCTGAAAATATATTTTTCAAAAATATGCTGTCAGAAACGAGTGAAGTAACAAACTCAAAGTAAACAACAGAAATTTCATTTTCACTGCAACTTTAGAAAATTTTCAATTTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTCATGTCATACTCTGAAACA</pcr_primer_p1>
		<pcr_primer_p2>ATGAATTCTCCATTCATCTATCA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTGTCATGTCATACTCTGAAACACCTGCTCCTATTGTATCCTGGGAAAGAGTCTACCAATATCTCATCTTTAAACCATCAATATTAGGACTCCAATCGGGGTGCTTACGTGGACTAGCCAGATAACAATGTGAAGACAATGTGGGCAGAAAACTAGGTACCTAAAAAAAATAACAAAAATGAATTATTCTTATACAAGTAGATATCTAAAACAGTTTCGAAAGTGATAGATGAATGGAGAATTCAT</canonical_amplicon>
		<polymorphic_amplicon>GTGTCATGTCATACTCTGAAACACCTGCTCCTATTGTATCCTGGGAAAGAGTCTACCAATATCTCATCTTTAAACCATCAATATTAGGACTCCAATCGGGGTGCTTACGTGGACTAGCCAGATAACAATGTGAAGACAATGTGGGYAGAAAACTAGGTACCTAAAAAAAATAACAAAAATGAATTATTCTTATACAAGTAGATATCTAAAACAGTTTCGAAAGTGATAGATGAATGGAGAATTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37375</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>288587</contig_pos>
        <strand></strand>
        <context>aataataatc[A/G]aattatttac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGAATCCATTCTGGTCCCTGTAAAAGATATCAGAAAATAAATAATAATC</left_flank>
        <right_flank>AATTATTTACAATGTTACGATGAATGTTTTATCAGTTTACTACTTCTTGA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTTTATTGAATAGACAATAATCCTAGTCATAAATCTCTTACTATTGGAGTATTGACATATGCATAAACATGACTGCCTTCATATAGTCATCTTTAATTGCTTTTGTTTTGTTCCGGTACAGTGTCATGTCATACTCTGAAACACCTGCTCCTATTGTATCCTGGGAAAGAGTCTACCAATATCTCATCTTTAAACCATCAATATTAGGACTCCAATCGGGGTGCTTACGTGGACTAGCCAGATAACAATGTGAAGACAATGTGGGCAGAAAACTAGGTACCTAAAAAAAATAACAAAAATGAATTATTCTTATACAAGTAGATATCTAAAACAGTTTCGAAAGTGATAGATGAATGGAGAATTCATCACATATGCAGTAGTTCCAAGAATCCATTCTGGTCCCTGTAAAAGATATCAGAAAATAAATAATAATCAAATTATTTACAATGTTACGATGAATGTTTTATCAGTTTACTACTTCTTGAAACCTCTTTCAGGAAATTAGATATATGAGCTCAAGGAATTGGGAATGAAAATATCTACATTATCATAAATCCTTTACAACACCTTGAGTATCTTTTCTGTGCGTTTACAATTTTTCGGTGACAGTAAGTTGTTTGTTACATATCATTTTAGTTTGGGTTCCCCATTGTTCTGAAAATATATTTTTCAAAAATATGCTGTCAGAAACGAGTGAAGTAACAAACTCAAAGTAAACAACAGAAATTTCATTTTCACTGCAACTTTAGAAAATTTTCAATTTATCTCTTCTGGAACTGAAAATTGAAGTTATATTTATATTATAGTCATTGTAAGAACAGAAAATCGGCTTTTCTTCGCGTATTCTGTTTCTTGATTAGTCCCAAAATTCGGAAAACTCTGCGCCTAGGGTATTTCGAATTTCAACTAGAATGATGTATTAAAAACTGTCTCAG</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTTTATTGAATAGACAATAATCCTAGTCATAAATCTCTTACTATTGGAGTATTGACATATGCATAAACATGACTGCCTTCATATAGTCATCTTTAATTGCTTTTGTTTTGTTCCGGTACAGTGTCATGTCATACTCTGAAACACCTGCTCCTATTGTATCCTGGGAAAGAGTCTACCAATATCTCATCTTTAAACCATCAATATTAGGACTCCAATCGGGGTGCTTACGTGGACTAGCCAGATAACAATGTGAAGACAATGTGGGCAGAAAACTAGGTACCTAAAAAAAATAACAAAAATGAATTATTCTTATACAAGTAGATATCTAAAACAGTTTCGAAAGTGATAGATGAATGGAGAATTCATCACATATGCAGTAGTTCCAAGAATCCATTCTGGTCCCTGTAAAAGATATCAGAAAATAAATAATAATCRAATTATTTACAATGTTACGATGAATGTTTTATCAGTTTACTACTTCTTGAAACCTCTTTCAGGAAATTAGATATATGAGCTCAAGGAATTGGGAATGAAAATATCTACATTATCATAAATCCTTTACAACACCTTGAGTATCTTTTCTGTGCGTTTACAATTTTTCGGTGACAGTAAGTTGTTTGTTACATATCATTTTAGTTTGGGTTCCCCATTGTTCTGAAAATATATTTTTCAAAAATATGCTGTCAGAAACGAGTGAAGTAACAAACTCAAAGTAAACAACAGAAATTTCATTTTCACTGCAACTTTAGAAAATTTTCAATTTATCTCTTCTGGAACTGAAAATTGAAGTTATATTTATATTATAGTCATTGTAAGAACAGAAAATCGGCTTTTCTTCGCGTATTCTGTTTCTTGATTAGTCCCAAAATTCGGAAAACTCTGCGCCTAGGGTATTTCGAATTTCAACTAGAATGATGTATTAAAAACTGTCTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGTGATAGATGAATGGAGAA</pcr_primer_p1>
		<pcr_primer_p2>CACAGAAAAGATACTCAAGGTGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAAGTGATAGATGAATGGAGAATTCATCACATATGCAGTAGTTCCAAGAATCCATTCTGGTCCCTGTAAAAGATATCAGAAAATAAATAATAATCAAATTATTTACAATGTTACGATGAATGTTTTATCAGTTTACTACTTCTTGAAACCTCTTTCAGGAAATTAGATATATGAGCTCAAGGAATTGGGAATGAAAATATCTACATTATCATAAATCCTTTACAACACCTTGAGTATCTTTTCTGTG</canonical_amplicon>
		<polymorphic_amplicon>GAAAGTGATAGATGAATGGAGAATTCATCACATATGCAGTAGTTCCAAGAATCCATTCTGGTCCCTGTAAAAGATATCAGAAAATAAATAATAATCRAATTATTTACAATGTTACGATGAATGTTTTATCAGTTTACTACTTCTTGAAACCTCTTTCAGGAAATTAGATATATGAGCTCAAGGAATTGGGAATGAAAATATCTACATTATCATAAATCCTTTACAACACCTTGAGTATCTTTTCTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37376</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>288613</contig_pos>
        <strand></strand>
        <context>tacgatgaat[G/A]ttttatcagt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GATATCAGAAAATAAATAATAATCAAATTATTTACAATGTTACGATGAAT</left_flank>
        <right_flank>TTTTATCAGTTTACTACTTCTTGAAACCTCTTTCAGGAAATTAGATATAT</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTTTATTGAATAGACAATAATCCTAGTCATAAATCTCTTACTATTGGAGTATTGACATATGCATAAACATGACTGCCTTCATATAGTCATCTTTAATTGCTTTTGTTTTGTTCCGGTACAGTGTCATGTCATACTCTGAAACACCTGCTCCTATTGTATCCTGGGAAAGAGTCTACCAATATCTCATCTTTAAACCATCAATATTAGGACTCCAATCGGGGTGCTTACGTGGACTAGCCAGATAACAATGTGAAGACAATGTGGGCAGAAAACTAGGTACCTAAAAAAAATAACAAAAATGAATTATTCTTATACAAGTAGATATCTAAAACAGTTTCGAAAGTGATAGATGAATGGAGAATTCATCACATATGCAGTAGTTCCAAGAATCCATTCTGGTCCCTGTAAAAGATATCAGAAAATAAATAATAATCAAATTATTTACAATGTTACGATGAATGTTTTATCAGTTTACTACTTCTTGAAACCTCTTTCAGGAAATTAGATATATGAGCTCAAGGAATTGGGAATGAAAATATCTACATTATCATAAATCCTTTACAACACCTTGAGTATCTTTTCTGTGCGTTTACAATTTTTCGGTGACAGTAAGTTGTTTGTTACATATCATTTTAGTTTGGGTTCCCCATTGTTCTGAAAATATATTTTTCAAAAATATGCTGTCAGAAACGAGTGAAGTAACAAACTCAAAGTAAACAACAGAAATTTCATTTTCACTGCAACTTTAGAAAATTTTCAATTTATCTCTTCTGGAACTGAAAATTGAAGTTATATTTATATTATAGTCATTGTAAGAACAGAAAATCGGCTTTTCTTCGCGTATTCTGTTTCTTGATTAGTCCCAAAATTCGGAAAACTCTGCGCCTAGGGTATTTCGAATTTCAACTAGAATGATGTATTAAAAACTGTCTCAGCTCCATTACTTTTTGCCGTCGTTATT</canonical>
            <polymorphic>NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTTTATTGAATAGACAATAATCCTAGTCATAAATCTCTTACTATTGGAGTATTGACATATGCATAAACATGACTGCCTTCATATAGTCATCTTTAATTGCTTTTGTTTTGTTCCGGTACAGTGTCATGTCATACTCTGAAACACCTGCTCCTATTGTATCCTGGGAAAGAGTCTACCAATATCTCATCTTTAAACCATCAATATTAGGACTCCAATCGGGGTGCTTACGTGGACTAGCCAGATAACAATGTGAAGACAATGTGGGCAGAAAACTAGGTACCTAAAAAAAATAACAAAAATGAATTATTCTTATACAAGTAGATATCTAAAACAGTTTCGAAAGTGATAGATGAATGGAGAATTCATCACATATGCAGTAGTTCCAAGAATCCATTCTGGTCCCTGTAAAAGATATCAGAAAATAAATAATAATCAAATTATTTACAATGTTACGATGAATRTTTTATCAGTTTACTACTTCTTGAAACCTCTTTCAGGAAATTAGATATATGAGCTCAAGGAATTGGGAATGAAAATATCTACATTATCATAAATCCTTTACAACACCTTGAGTATCTTTTCTGTGCGTTTACAATTTTTCGGTGACAGTAAGTTGTTTGTTACATATCATTTTAGTTTGGGTTCCCCATTGTTCTGAAAATATATTTTTCAAAAATATGCTGTCAGAAACGAGTGAAGTAACAAACTCAAAGTAAACAACAGAAATTTCATTTTCACTGCAACTTTAGAAAATTTTCAATTTATCTCTTCTGGAACTGAAAATTGAAGTTATATTTATATTATAGTCATTGTAAGAACAGAAAATCGGCTTTTCTTCGCGTATTCTGTTTCTTGATTAGTCCCAAAATTCGGAAAACTCTGCGCCTAGGGTATTTCGAATTTCAACTAGAATGATGTATTAAAAACTGTCTCAGCTCCATTACTTTTTGCCGTCGTTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGTGATAGATGAATGGAGAA</pcr_primer_p1>
		<pcr_primer_p2>CACAGAAAAGATACTCAAGGTGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAAGTGATAGATGAATGGAGAATTCATCACATATGCAGTAGTTCCAAGAATCCATTCTGGTCCCTGTAAAAGATATCAGAAAATAAATAATAATCAAATTATTTACAATGTTACGATGAATGTTTTATCAGTTTACTACTTCTTGAAACCTCTTTCAGGAAATTAGATATATGAGCTCAAGGAATTGGGAATGAAAATATCTACATTATCATAAATCCTTTACAACACCTTGAGTATCTTTTCTGTG</canonical_amplicon>
		<polymorphic_amplicon>GAAAGTGATAGATGAATGGAGAATTCATCACATATGCAGTAGTTCCAAGAATCCATTCTGGTCCCTGTAAAAGATATCAGAAAATAAATAATAATCAAATTATTTACAATGTTACGATGAATRTTTTATCAGTTTACTACTTCTTGAAACCTCTTTCAGGAAATTAGATATATGAGCTCAAGGAATTGGGAATGAAAATATCTACATTATCATAAATCCTTTACAACACCTTGAGTATCTTTTCTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37377</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>288649</contig_pos>
        <strand>+</strand>
        <context>acctctttca[C/T]gaaattagat</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGTTACGATGAATGTTTTATCAGTTTACTACTTCTTGAAACCTCTTTCA</left_flank>
        <right_flank>GAAATTAGATATATGAGCTCAAGGAATTGGGAATGAAAATATCTACATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>NCGTTTTATTGAATAGACAATAATCCTAGTCATAAATCTCTTACTATTGGAGTATTGACATATGCATAAACATGACTGCCTTCATATAGTCATCTTTAATTGCTTTTGTTTTGTTCCGGTACAGTGTCATGTCATACTCTGAAACACCTGCTCCTATTGTATCCTGGGAAAGAGTCTACCAATATCTCATCTTTAAACCATCAATATTAGGACTCCAATCGGGGTGCTTACGTGGACTAGCCAGATAACAATGTGAAGACAATGTGGGCAGAAAACTAGGTACCTAAAAAAAATAACAAAAATGAATTATTCTTATACAAGTAGATATCTAAAACAGTTTCGAAAGTGATAGATGAATGGAGAATTCATCACATATGCAGTAGTTCCAAGAATCCATTCTGGTCCCTGTAAAAGATATCAGAAAATAAATAATAATCAAATTATTTACAATGTTACGATGAATGTTTTATCAGTTTACTACTTCTTGAAACCTCTTTCAGGAAATTAGATATATGAGCTCAAGGAATTGGGAATGAAAATATCTACATTATCATAAATCCTTTACAACACCTTGAGTATCTTTTCTGTGCGTTTACAATTTTTCGGTGACAGTAAGTTGTTTGTTACATATCATTTTAGTTTGGGTTCCCCATTGTTCTGAAAATATATTTTTCAAAAATATGCTGTCAGAAACGAGTGAAGTAACAAACTCAAAGTAAACAACAGAAATTTCATTTTCACTGCAACTTTAGAAAATTTTCAATTTATCTCTTCTGGAACTGAAAATTGAAGTTATATTTATATTATAGTCATTGTAAGAACAGAAAATCGGCTTTTCTTCGCGTATTCTGTTTCTTGATTAGTCCCAAAATTCGGAAAACTCTGCGCCTAGGGTATTTCGAATTTCAACTAGAATGATGTATTAAAAACTGTCTCAGCTCCATTACTTTTTGCCGTCGTTATTTTCTTTCCAGGAGGACTTTCTGCCTCCTGGCAATCA</canonical>
            <polymorphic>NCGTTTTATTGAATAGACAATAATCCTAGTCATAAATCTCTTACTATTGGAGTATTGACATATGCATAAACATGACTGCCTTCATATAGTCATCTTTAATTGCTTTTGTTTTGTTCCGGTACAGTGTCATGTCATACTCTGAAACACCTGCTCCTATTGTATCCTGGGAAAGAGTCTACCAATATCTCATCTTTAAACCATCAATATTAGGACTCCAATCGGGGTGCTTACGTGGACTAGCCAGATAACAATGTGAAGACAATGTGGGCAGAAAACTAGGTACCTAAAAAAAATAACAAAAATGAATTATTCTTATACAAGTAGATATCTAAAACAGTTTCGAAAGTGATAGATGAATGGAGAATTCATCACATATGCAGTAGTTCCAAGAATCCATTCTGGTCCCTGTAAAAGATATCAGAAAATAAATAATAATCAAATTATTTACAATGTTACGATGAATGTTTTATCAGTTTACTACTTCTTGAAACCTCTTTCAYGAAATTAGATATATGAGCTCAAGGAATTGGGAATGAAAATATCTACATTATCATAAATCCTTTACAACACCTTGAGTATCTTTTCTGTGCGTTTACAATTTTTCGGTGACAGTAAGTTGTTTGTTACATATCATTTTAGTTTGGGTTCCCCATTGTTCTGAAAATATATTTTTCAAAAATATGCTGTCAGAAACGAGTGAAGTAACAAACTCAAAGTAAACAACAGAAATTTCATTTTCACTGCAACTTTAGAAAATTTTCAATTTATCTCTTCTGGAACTGAAAATTGAAGTTATATTTATATTATAGTCATTGTAAGAACAGAAAATCGGCTTTTCTTCGCGTATTCTGTTTCTTGATTAGTCCCAAAATTCGGAAAACTCTGCGCCTAGGGTATTTCGAATTTCAACTAGAATGATGTATTAAAAACTGTCTCAGCTCCATTACTTTTTGCCGTCGTTATTTTCTTTCCAGGAGGACTTTCTGCCTCCTGGCAATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>497 375 128</canonical_bands>
                <polymorphic_bands>872 128</polymorphic_bands>
            </assay>
            <assay>
                <site>CCTNNNNNAGG</site>
                <isoschizomers>
                    <enzyme>BstENI</enzyme>
                    <enzyme>EcoNI</enzyme>
                    <enzyme>XagI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAGTGATAGATGAATGGAGAA</pcr_primer_p1>
		<pcr_primer_p2>CACAGAAAAGATACTCAAGGTGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAAGTGATAGATGAATGGAGAATTCATCACATATGCAGTAGTTCCAAGAATCCATTCTGGTCCCTGTAAAAGATATCAGAAAATAAATAATAATCAAATTATTTACAATGTTACGATGAATGTTTTATCAGTTTACTACTTCTTGAAACCTCTTTCAGGAAATTAGATATATGAGCTCAAGGAATTGGGAATGAAAATATCTACATTATCATAAATCCTTTACAACACCTTGAGTATCTTTTCTGTG</canonical_amplicon>
		<polymorphic_amplicon>GAAAGTGATAGATGAATGGAGAATTCATCACATATGCAGTAGTTCCAAGAATCCATTCTGGTCCCTGTAAAAGATATCAGAAAATAAATAATAATCAAATTATTTACAATGTTACGATGAATGTTTTATCAGTTTACTACTTCTTGAAACCTCTTTCAYGAAATTAGATATATGAGCTCAAGGAATTGGGAATGAAAATATCTACATTATCATAAATCCTTTACAACACCTTGAGTATCTTTTCTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37378</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>291779</contig_pos>
        <strand>+</strand>
        <context>TGAACACATT[G/T]CTAACGCCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATAAAGCGGCTCATAAGTGACATCGATTTCACTAAGTCTCTGAACACATT</left_flank>
        <right_flank>CTAACGCCTGTTCAAAACGTTGTTTTATTTTTTTCGAGAAACAGGAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGATTTTTTCGAATTCAGAATCTTAATAAAATCTCTAAAAATATTCTGTTTCAATAAAGATTCGATTCGTAACATACGACATGCAGATAATCATTGAACTCTAATGCATGCTCTAAAACCTGATTTTTTAGAATTTTTCAAAAATATATTCGTTTCACGAACAATGCTAATTTACAAGTAAACTTGTTTAAGATAATTGTATCGTTGTTTCTTCAGTACAATTATATGTTACCGATTTCGTGATGAATTGTAAGCTTTTGTTTACTTTTTGAACAGAGACAATTATTTCCGTAGCAAGACCCCATAACCATCAACTTCTAAATTTATCTAGACTCCTGTAAGAGACATTTGAAAATAGTCCACTGACGGAATATATACGGAATATTTTTCACATTATAATGAACATTTCGTCAGTTGACTATTTTTTATACCTTTCACAGGAAATGTGATAAAGCGGCTCATAAGTGACATCGATTTCACTAAGTCTCTGAACACATTACTAACGCCTGTTCAAAACGTTGTTTTATTTTTTTCGAGAAACAGGAAATTATTTAGGCAAATAATAAAGAGGGTAGGTACAAAAATTTTGGGGTCATTGGAGAACAATACAATTTAGAGTTATATAATTCTCAACTCAGTGTTACAAAATACCTGAAATAGTCCGAATTTTGTACCCCTAAACCGCTTTGTGGCCCCTTGTTCCCCCGAATTGGTGTACCCTCCGAATAATGTGACGGGCTTTTCGGTTGTTTTTCATACTTTTTTGATACTTGGCTCTTCTCAAAATCAGTCTAACTTTTTAAATTTTATTTGATTAAAAAAAAGGTAAAATTCAAAGCTGTCCGCATCACTATCAGTGTAAAACAACAACAAAACGAAAATTCTGTTTCGTGAAGTTTATGAAATCAATGCAATGAAAGTAGATAATAATCCTGGACCGTTGAAAGGTTTCTGTCTGTGTGTCTGTGTGTCCATTCCTTCTCTTCTCCTATTTTCATT</canonical>
            <polymorphic>CAGATTTTTTCGAATTCAGAATCTTAATAAAATCTCTAAAAATATTCTGTTTCAATAAAGATTCGATTCGTAACATACGACATGCAGATAATCATTGAACTCTAATGCATGCTCTAAAACCTGATTTTTTAGAATTTTTCAAAAATATATTCGTTTCACGAACAATGCTAATTTACAAGTAAACTTGTTTAAGATAATTGTATCGTTGTTTCTTCAGTACAATTATATGTTACCGATTTCGTGATGAATTGTAAGCTTTTGTTTACTTTTTGAACAGAGACAATTATTTCCGTAGCAAGACCCCATAACCATCAACTTCTAAATTTATCTAGACTCCTGTAAGAGACATTTGAAAATAGTCCACTGACGGAATATATACGGAATATTTTTCACATTATAATGAACATTTCGTCAGTTGACTATTTTTTATACCTTTCACAGGAAATGTGATAAAGCGGCTCATAAGTGACATCGATTTCACTAAGTCTCTGAACACATTKCTAACGCCTGTTCAAAACGTTGTTTTATTTTTTTCGAGAAACAGGAAATTATTTAGGCAAATAATAAAGAGGGTAGGTACAAAAATTTTGGGGTCATTGGAGAACAATACAATTTAGAGTTATATAATTCTCAACTCAGTGTTACAAAATACCTGAAATAGTCCGAATTTTGTACCCCTAAACCGCTTTGTGGCCCCTTGTTCCCCCGAATTGGTGTACCCTCCGAATAATGTGACGGGCTTTTCGGTTGTTTTTCATACTTTTTTGATACTTGGCTCTTCTCAAAATCAGTCTAACTTTTTAAATTTTATTTGATTAAAAAAAAGGTAAAATTCAAAGCTGTCCGCATCACTATCAGTGTAAAACAACAACAAAACGAAAATTCTGTTTCGTGAAGTTTATGAAATCAATGCAATGAAAGTAGATAATAATCCTGGACCGTTGAAAGGTTTCTGTCTGTGTGTCTGTGTGTCCATTCCTTCTCTTCTCCTATTTTCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTACTTTTTGAACAGAGACAATTA</pcr_primer_p1>
		<pcr_primer_p2>ACCCTCTTTATTATTTGCCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>313</pcr_amplicon_size>
		<canonical_amplicon>TTTACTTTTTGAACAGAGACAATTATTTCCGTAGCAAGACCCCATAACCATCAACTTCTAAATTTATCTAGACTCCTGTAAGAGACATTTGAAAATAGTCCACTGACGGAATATATACGGAATATTTTTCACATTATAATGAACATTTCGTCAGTTGACTATTTTTTATACCTTTCACAGGAAATGTGATAAAGCGGCTCATAAGTGACATCGATTTCACTAAGTCTCTGAACACATTACTAACGCCTGTTCAAAACGTTGTTTTATTTTTTTCGAGAAACAGGAAATTATTTAGGCAAATAATAAAGAGGGT</canonical_amplicon>
		<polymorphic_amplicon>TTTACTTTTTGAACAGAGACAATTATTTCCGTAGCAAGACCCCATAACCATCAACTTCTAAATTTATCTAGACTCCTGTAAGAGACATTTGAAAATAGTCCACTGACGGAATATATACGGAATATTTTTCACATTATAATGAACATTTCGTCAGTTGACTATTTTTTATACCTTTCACAGGAAATGTGATAAAGCGGCTCATAAGTGACATCGATTTCACTAAGTCTCTGAACACATTKCTAACGCCTGTTCAAAACGTTGTTTTATTTTTTTCGAGAAACAGGAAATTATTTAGGCAAATAATAAAGAGGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37379</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>291807</contig_pos>
        <strand>+</strand>
        <context>CGTTGTTTTA[C/T]TTTTTTCGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCACTAAGTCTCTGAACACATTACTAACGCCTGTTCAAAACGTTGTTTTA</left_flank>
        <right_flank>TTTTTTCGAGAAACAGGAAATTATTTAGGCAAATAATAAAGAGGGTAGGT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATCTCTAAAAATATTCTGTTTCAATAAAGATTCGATTCGTAACATACGACATGCAGATAATCATTGAACTCTAATGCATGCTCTAAAACCTGATTTTTTAGAATTTTTCAAAAATATATTCGTTTCACGAACAATGCTAATTTACAAGTAAACTTGTTTAAGATAATTGTATCGTTGTTTCTTCAGTACAATTATATGTTACCGATTTCGTGATGAATTGTAAGCTTTTGTTTACTTTTTGAACAGAGACAATTATTTCCGTAGCAAGACCCCATAACCATCAACTTCTAAATTTATCTAGACTCCTGTAAGAGACATTTGAAAATAGTCCACTGACGGAATATATACGGAATATTTTTCACATTATAATGAACATTTCGTCAGTTGACTATTTTTTATACCTTTCACAGGAAATGTGATAAAGCGGCTCATAAGTGACATCGATTTCACTAAGTCTCTGAACACATTACTAACGCCTGTTCAAAACGTTGTTTTATTTTTTTCGAGAAACAGGAAATTATTTAGGCAAATAATAAAGAGGGTAGGTACAAAAATTTTGGGGTCATTGGAGAACAATACAATTTAGAGTTATATAATTCTCAACTCAGTGTTACAAAATACCTGAAATAGTCCGAATTTTGTACCCCTAAACCGCTTTGTGGCCCCTTGTTCCCCCGAATTGGTGTACCCTCCGAATAATGTGACGGGCTTTTCGGTTGTTTTTCATACTTTTTTGATACTTGGCTCTTCTCAAAATCAGTCTAACTTTTTAAATTTTATTTGATTAAAAAAAAGGTAAAATTCAAAGCTGTCCGCATCACTATCAGTGTAAAACAACAACAAAACGAAAATTCTGTTTCGTGAAGTTTATGAAATCAATGCAATGAAAGTAGATAATAATCCTGGACCGTTGAAAGGTTTCTGTCTGTGTGTCTGTGTGTCCATTCCTTCTCTTCTCCTATTTTCATTCTCTTCTCAACTCCATTGTTTGTTACAC</canonical>
            <polymorphic>AAAATCTCTAAAAATATTCTGTTTCAATAAAGATTCGATTCGTAACATACGACATGCAGATAATCATTGAACTCTAATGCATGCTCTAAAACCTGATTTTTTAGAATTTTTCAAAAATATATTCGTTTCACGAACAATGCTAATTTACAAGTAAACTTGTTTAAGATAATTGTATCGTTGTTTCTTCAGTACAATTATATGTTACCGATTTCGTGATGAATTGTAAGCTTTTGTTTACTTTTTGAACAGAGACAATTATTTCCGTAGCAAGACCCCATAACCATCAACTTCTAAATTTATCTAGACTCCTGTAAGAGACATTTGAAAATAGTCCACTGACGGAATATATACGGAATATTTTTCACATTATAATGAACATTTCGTCAGTTGACTATTTTTTATACCTTTCACAGGAAATGTGATAAAGCGGCTCATAAGTGACATCGATTTCACTAAGTCTCTGAACACATTACTAACGCCTGTTCAAAACGTTGTTTTAYTTTTTTCGAGAAACAGGAAATTATTTAGGCAAATAATAAAGAGGGTAGGTACAAAAATTTTGGGGTCATTGGAGAACAATACAATTTAGAGTTATATAATTCTCAACTCAGTGTTACAAAATACCTGAAATAGTCCGAATTTTGTACCCCTAAACCGCTTTGTGGCCCCTTGTTCCCCCGAATTGGTGTACCCTCCGAATAATGTGACGGGCTTTTCGGTTGTTTTTCATACTTTTTTGATACTTGGCTCTTCTCAAAATCAGTCTAACTTTTTAAATTTTATTTGATTAAAAAAAAGGTAAAATTCAAAGCTGTCCGCATCACTATCAGTGTAAAACAACAACAAAACGAAAATTCTGTTTCGTGAAGTTTATGAAATCAATGCAATGAAAGTAGATAATAATCCTGGACCGTTGAAAGGTTTCTGTCTGTGTGTCTGTGTGTCCATTCCTTCTCTTCTCCTATTTTCATTCTCTTCTCAACTCCATTGTTTGTTACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTCACTAAGTCTCTGAACACA</pcr_primer_p1>
		<pcr_primer_p2>CACATTATTCGGAGGGTACA</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>GATTTCACTAAGTCTCTGAACACATTACTAACGCCTGTTCAAAACGTTGTTTTATTTTTTTCGAGAAACAGGAAATTATTTAGGCAAATAATAAAGAGGGTAGGTACAAAAATTTTGGGGTCATTGGAGAACAATACAATTTAGAGTTATATAATTCTCAACTCAGTGTTACAAAATACCTGAAATAGTCCGAATTTTGTACCCCTAAACCGCTTTGTGGCCCCTTGTTCCCCCGAATTGGTGTACCCTCCGAATAATGTG</canonical_amplicon>
		<polymorphic_amplicon>GATTTCACTAAGTCTCTGAACACATTACTAACGCCTGTTCAAAACGTTGTTTTAYTTTTTTCGAGAAACAGGAAATTATTTAGGCAAATAATAAAGAGGGTAGGTACAAAAATTTTGGGGTCATTGGAGAACAATACAATTTAGAGTTATATAATTCTCAACTCAGTGTTACAAAATACCTGAAATAGTCCGAATTTTGTACCCCTAAACCGCTTTGTGGCCCCTTGTTCCCCCGAATTGGTGTACCCTCCGAATAATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37380</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>291828</contig_pos>
        <strand>+</strand>
        <context>AAACAGGAAA[C/T]TWTTTAGGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACTAACGCCTGTTCAAAACGTTGTTTTATTTTTTTCGAGAAACAGGAAA</left_flank>
        <right_flank>TATTTAGGCAAATAATAAAGAGGGTAGGTACAAAAATTTTGGGGTCATTG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCAATAAAGATTCGATTCGTAACATACGACATGCAGATAATCATTGAACTCTAATGCATGCTCTAAAACCTGATTTTTTAGAATTTTTCAAAAATATATTCGTTTCACGAACAATGCTAATTTACAAGTAAACTTGTTTAAGATAATTGTATCGTTGTTTCTTCAGTACAATTATATGTTACCGATTTCGTGATGAATTGTAAGCTTTTGTTTACTTTTTGAACAGAGACAATTATTTCCGTAGCAAGACCCCATAACCATCAACTTCTAAATTTATCTAGACTCCTGTAAGAGACATTTGAAAATAGTCCACTGACGGAATATATACGGAATATTTTTCACATTATAATGAACATTTCGTCAGTTGACTATTTTTTATACCTTTCACAGGAAATGTGATAAAGCGGCTCATAAGTGACATCGATTTCACTAAGTCTCTGAACACATTACTAACGCCTGTTCAAAACGTTGTTTTATTTTTTTCGAGAAACAGGAAATTATTTAGGCAAATAATAAAGAGGGTAGGTACAAAAATTTTGGGGTCATTGGAGAACAATACAATTTAGAGTTATATAATTCTCAACTCAGTGTTACAAAATACCTGAAATAGTCCGAATTTTGTACCCCTAAACCGCTTTGTGGCCCCTTGTTCCCCCGAATTGGTGTACCCTCCGAATAATGTGACGGGCTTTTCGGTTGTTTTTCATACTTTTTTGATACTTGGCTCTTCTCAAAATCAGTCTAACTTTTTAAATTTTATTTGATTAAAAAAAAGGTAAAATTCAAAGCTGTCCGCATCACTATCAGTGTAAAACAACAACAAAACGAAAATTCTGTTTCGTGAAGTTTATGAAATCAATGCAATGAAAGTAGATAATAATCCTGGACCGTTGAAAGGTTTCTGTCTGTGTGTCTGTGTGTCCATTCCTTCTCTTCTCCTATTTTCATTCTCTTCTCAACTCCATTGTTTGTTACACCATGACCAGCCTACCGGATCA</canonical>
            <polymorphic>TTTCAATAAAGATTCGATTCGTAACATACGACATGCAGATAATCATTGAACTCTAATGCATGCTCTAAAACCTGATTTTTTAGAATTTTTCAAAAATATATTCGTTTCACGAACAATGCTAATTTACAAGTAAACTTGTTTAAGATAATTGTATCGTTGTTTCTTCAGTACAATTATATGTTACCGATTTCGTGATGAATTGTAAGCTTTTGTTTACTTTTTGAACAGAGACAATTATTTCCGTAGCAAGACCCCATAACCATCAACTTCTAAATTTATCTAGACTCCTGTAAGAGACATTTGAAAATAGTCCACTGACGGAATATATACGGAATATTTTTCACATTATAATGAACATTTCGTCAGTTGACTATTTTTTATACCTTTCACAGGAAATGTGATAAAGCGGCTCATAAGTGACATCGATTTCACTAAGTCTCTGAACACATTACTAACGCCTGTTCAAAACGTTGTTTTATTTTTTTCGAGAAACAGGAAAYTATTTAGGCAAATAATAAAGAGGGTAGGTACAAAAATTTTGGGGTCATTGGAGAACAATACAATTTAGAGTTATATAATTCTCAACTCAGTGTTACAAAATACCTGAAATAGTCCGAATTTTGTACCCCTAAACCGCTTTGTGGCCCCTTGTTCCCCCGAATTGGTGTACCCTCCGAATAATGTGACGGGCTTTTCGGTTGTTTTTCATACTTTTTTGATACTTGGCTCTTCTCAAAATCAGTCTAACTTTTTAAATTTTATTTGATTAAAAAAAAGGTAAAATTCAAAGCTGTCCGCATCACTATCAGTGTAAAACAACAACAAAACGAAAATTCTGTTTCGTGAAGTTTATGAAATCAATGCAATGAAAGTAGATAATAATCCTGGACCGTTGAAAGGTTTCTGTCTGTGTGTCTGTGTGTCCATTCCTTCTCTTCTCCTATTTTCATTCTCTTCTCAACTCCATTGTTTGTTACACCATGACCAGCCTACCGGATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>225 169 95 83 50 43 40 40 37 37 35 27 27 26 26 25 15</canonical_bands>
                <polymorphic_bands>262 169 95 83 50 43 40 40 37 35 27 27 26 26 25 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCACTAAGTCTCTGAACACATT</pcr_primer_p1>
		<pcr_primer_p2>CACATTATTCGGAGGGTACA</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>TTTCACTAAGTCTCTGAACACATTACTAACGCCTGTTCAAAACGTTGTTTTATTTTTTTCGAGAAACAGGAAATTATTTAGGCAAATAATAAAGAGGGTAGGTACAAAAATTTTGGGGTCATTGGAGAACAATACAATTTAGAGTTATATAATTCTCAACTCAGTGTTACAAAATACCTGAAATAGTCCGAATTTTGTACCCCTAAACCGCTTTGTGGCCCCTTGTTCCCCCGAATTGGTGTACCCTCCGAATAATGTG</canonical_amplicon>
		<polymorphic_amplicon>TTTCACTAAGTCTCTGAACACATTACTAACGCCTGTTCAAAACGTTGTTTTATTTTTTTCGAGAAACAGGAAAYTATTTAGGCAAATAATAAAGAGGGTAGGTACAAAAATTTTGGGGTCATTGGAGAACAATACAATTTAGAGTTATATAATTCTCAACTCAGTGTTACAAAATACCTGAAATAGTCCGAATTTTGTACCCCTAAACCGCTTTGTGGCCCCTTGTTCCCCCGAATTGGTGTACCCTCCGAATAATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37381</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>291830</contig_pos>
        <strand>+</strand>
        <context>ACAGGAAAYT[A/T]TTTAGGCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTAACGCCTGTTCAAAACGTTGTTTTATTTTTTTCGAGAAACAGGAAATT</left_flank>
        <right_flank>TTTAGGCAAATAATAAAGAGGGTAGGTACAAAAATTTTGGGGTCATTGGA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAATAAAGATTCGATTCGTAACATACGACATGCAGATAATCATTGAACTCTAATGCATGCTCTAAAACCTGATTTTTTAGAATTTTTCAAAAATATATTCGTTTCACGAACAATGCTAATTTACAAGTAAACTTGTTTAAGATAATTGTATCGTTGTTTCTTCAGTACAATTATATGTTACCGATTTCGTGATGAATTGTAAGCTTTTGTTTACTTTTTGAACAGAGACAATTATTTCCGTAGCAAGACCCCATAACCATCAACTTCTAAATTTATCTAGACTCCTGTAAGAGACATTTGAAAATAGTCCACTGACGGAATATATACGGAATATTTTTCACATTATAATGAACATTTCGTCAGTTGACTATTTTTTATACCTTTCACAGGAAATGTGATAAAGCGGCTCATAAGTGACATCGATTTCACTAAGTCTCTGAACACATTACTAACGCCTGTTCAAAACGTTGTTTTATTTTTTTCGAGAAACAGGAAATTATTTAGGCAAATAATAAAGAGGGTAGGTACAAAAATTTTGGGGTCATTGGAGAACAATACAATTTAGAGTTATATAATTCTCAACTCAGTGTTACAAAATACCTGAAATAGTCCGAATTTTGTACCCCTAAACCGCTTTGTGGCCCCTTGTTCCCCCGAATTGGTGTACCCTCCGAATAATGTGACGGGCTTTTCGGTTGTTTTTCATACTTTTTTGATACTTGGCTCTTCTCAAAATCAGTCTAACTTTTTAAATTTTATTTGATTAAAAAAAAGGTAAAATTCAAAGCTGTCCGCATCACTATCAGTGTAAAACAACAACAAAACGAAAATTCTGTTTCGTGAAGTTTATGAAATCAATGCAATGAAAGTAGATAATAATCCTGGACCGTTGAAAGGTTTCTGTCTGTGTGTCTGTGTGTCCATTCCTTCTCTTCTCCTATTTTCATTCTCTTCTCAACTCCATTGTTTGTTACACCATGACCAGCCTACCGGATCAAG</canonical>
            <polymorphic>TCAATAAAGATTCGATTCGTAACATACGACATGCAGATAATCATTGAACTCTAATGCATGCTCTAAAACCTGATTTTTTAGAATTTTTCAAAAATATATTCGTTTCACGAACAATGCTAATTTACAAGTAAACTTGTTTAAGATAATTGTATCGTTGTTTCTTCAGTACAATTATATGTTACCGATTTCGTGATGAATTGTAAGCTTTTGTTTACTTTTTGAACAGAGACAATTATTTCCGTAGCAAGACCCCATAACCATCAACTTCTAAATTTATCTAGACTCCTGTAAGAGACATTTGAAAATAGTCCACTGACGGAATATATACGGAATATTTTTCACATTATAATGAACATTTCGTCAGTTGACTATTTTTTATACCTTTCACAGGAAATGTGATAAAGCGGCTCATAAGTGACATCGATTTCACTAAGTCTCTGAACACATTACTAACGCCTGTTCAAAACGTTGTTTTATTTTTTTCGAGAAACAGGAAATTWTTTAGGCAAATAATAAAGAGGGTAGGTACAAAAATTTTGGGGTCATTGGAGAACAATACAATTTAGAGTTATATAATTCTCAACTCAGTGTTACAAAATACCTGAAATAGTCCGAATTTTGTACCCCTAAACCGCTTTGTGGCCCCTTGTTCCCCCGAATTGGTGTACCCTCCGAATAATGTGACGGGCTTTTCGGTTGTTTTTCATACTTTTTTGATACTTGGCTCTTCTCAAAATCAGTCTAACTTTTTAAATTTTATTTGATTAAAAAAAAGGTAAAATTCAAAGCTGTCCGCATCACTATCAGTGTAAAACAACAACAAAACGAAAATTCTGTTTCGTGAAGTTTATGAAATCAATGCAATGAAAGTAGATAATAATCCTGGACCGTTGAAAGGTTTCTGTCTGTGTGTCTGTGTGTCCATTCCTTCTCTTCTCCTATTTTCATTCTCTTCTCAACTCCATTGTTTGTTACACCATGACCAGCCTACCGGATCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCACTAAGTCTCTGAACACATT</pcr_primer_p1>
		<pcr_primer_p2>CACATTATTCGGAGGGTACA</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>TTTCACTAAGTCTCTGAACACATTACTAACGCCTGTTCAAAACGTTGTTTTATTTTTTTCGAGAAACAGGAAATTATTTAGGCAAATAATAAAGAGGGTAGGTACAAAAATTTTGGGGTCATTGGAGAACAATACAATTTAGAGTTATATAATTCTCAACTCAGTGTTACAAAATACCTGAAATAGTCCGAATTTTGTACCCCTAAACCGCTTTGTGGCCCCTTGTTCCCCCGAATTGGTGTACCCTCCGAATAATGTG</canonical_amplicon>
		<polymorphic_amplicon>TTTCACTAAGTCTCTGAACACATTACTAACGCCTGTTCAAAACGTTGTTTTATTTTTTTCGAGAAACAGGAAATTWTTTAGGCAAATAATAAAGAGGGTAGGTACAAAAATTTTGGGGTCATTGGAGAACAATACAATTTAGAGTTATATAATTCTCAACTCAGTGTTACAAAATACCTGAAATAGTCCGAATTTTGTACCCCTAAACCGCTTTGTGGCCCCTTGTTCCCCCGAATTGGTGTACCCTCCGAATAATGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37382</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>291888</contig_pos>
        <strand>+</strand>
        <context>GGAGAACAAT[A/G]CAATTTAGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATAATAAAGAGGGTAGGTACAAAAATTTTGGGGTCATTGGAGAACAAT</left_flank>
        <right_flank>CAATTTAGAGTTATATAATTCTCAACTCAGTGTTACAAAATACCTGAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTCTAAAACCTGATTTTTTAGAATTTTTCAAAAATATATTCGTTTCACGAACAATGCTAATTTACAAGTAAACTTGTTTAAGATAATTGTATCGTTGTTTCTTCAGTACAATTATATGTTACCGATTTCGTGATGAATTGTAAGCTTTTGTTTACTTTTTGAACAGAGACAATTATTTCCGTAGCAAGACCCCATAACCATCAACTTCTAAATTTATCTAGACTCCTGTAAGAGACATTTGAAAATAGTCCACTGACGGAATATATACGGAATATTTTTCACATTATAATGAACATTTCGTCAGTTGACTATTTTTTATACCTTTCACAGGAAATGTGATAAAGCGGCTCATAAGTGACATCGATTTCACTAAGTCTCTGAACACATTACTAACGCCTGTTCAAAACGTTGTTTTATTTTTTTCGAGAAACAGGAAATTATTTAGGCAAATAATAAAGAGGGTAGGTACAAAAATTTTGGGGTCATTGGAGAACAATACAATTTAGAGTTATATAATTCTCAACTCAGTGTTACAAAATACCTGAAATAGTCCGAATTTTGTACCCCTAAACCGCTTTGTGGCCCCTTGTTCCCCCGAATTGGTGTACCCTCCGAATAATGTGACGGGCTTTTCGGTTGTTTTTCATACTTTTTTGATACTTGGCTCTTCTCAAAATCAGTCTAACTTTTTAAATTTTATTTGATTAAAAAAAAGGTAAAATTCAAAGCTGTCCGCATCACTATCAGTGTAAAACAACAACAAAACGAAAATTCTGTTTCGTGAAGTTTATGAAATCAATGCAATGAAAGTAGATAATAATCCTGGACCGTTGAAAGGTTTCTGTCTGTGTGTCTGTGTGTCCATTCCTTCTCTTCTCCTATTTTCATTCTCTTCTCAACTCCATTGTTTGTTACACCATGACCAGCCTACCGGATCAAGTGTGAGGGTCAATTCACCTTTTCTCCCTCGTTTTCCCTCATCATAATACTCGAAAAAC</canonical>
            <polymorphic>TGCTCTAAAACCTGATTTTTTAGAATTTTTCAAAAATATATTCGTTTCACGAACAATGCTAATTTACAAGTAAACTTGTTTAAGATAATTGTATCGTTGTTTCTTCAGTACAATTATATGTTACCGATTTCGTGATGAATTGTAAGCTTTTGTTTACTTTTTGAACAGAGACAATTATTTCCGTAGCAAGACCCCATAACCATCAACTTCTAAATTTATCTAGACTCCTGTAAGAGACATTTGAAAATAGTCCACTGACGGAATATATACGGAATATTTTTCACATTATAATGAACATTTCGTCAGTTGACTATTTTTTATACCTTTCACAGGAAATGTGATAAAGCGGCTCATAAGTGACATCGATTTCACTAAGTCTCTGAACACATTACTAACGCCTGTTCAAAACGTTGTTTTATTTTTTTCGAGAAACAGGAAATTATTTAGGCAAATAATAAAGAGGGTAGGTACAAAAATTTTGGGGTCATTGGAGAACAATRCAATTTAGAGTTATATAATTCTCAACTCAGTGTTACAAAATACCTGAAATAGTCCGAATTTTGTACCCCTAAACCGCTTTGTGGCCCCTTGTTCCCCCGAATTGGTGTACCCTCCGAATAATGTGACGGGCTTTTCGGTTGTTTTTCATACTTTTTTGATACTTGGCTCTTCTCAAAATCAGTCTAACTTTTTAAATTTTATTTGATTAAAAAAAAGGTAAAATTCAAAGCTGTCCGCATCACTATCAGTGTAAAACAACAACAAAACGAAAATTCTGTTTCGTGAAGTTTATGAAATCAATGCAATGAAAGTAGATAATAATCCTGGACCGTTGAAAGGTTTCTGTCTGTGTGTCTGTGTGTCCATTCCTTCTCTTCTCCTATTTTCATTCTCTTCTCAACTCCATTGTTTGTTACACCATGACCAGCCTACCGGATCAAGTGTGAGGGTCAATTCACCTTTTCTCCCTCGTTTTCCCTCATCATAATACTCGAAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGGCAAATAATAAAGAGGGTAG</pcr_primer_p1>
		<pcr_primer_p2>GTTAGACTGATTTTGAGAAGAGC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTAGGCAAATAATAAAGAGGGTAGGTACAAAAATTTTGGGGTCATTGGAGAACAATACAATTTAGAGTTATATAATTCTCAACTCAGTGTTACAAAATACCTGAAATAGTCCGAATTTTGTACCCCTAAACCGCTTTGTGGCCCCTTGTTCCCCCGAATTGGTGTACCCTCCGAATAATGTGACGGGCTTTTCGGTTGTTTTTCATACTTTTTTGATACTTGGCTCTTCTCAAAATCAGTCTAAC</canonical_amplicon>
		<polymorphic_amplicon>TTAGGCAAATAATAAAGAGGGTAGGTACAAAAATTTTGGGGTCATTGGAGAACAATRCAATTTAGAGTTATATAATTCTCAACTCAGTGTTACAAAATACCTGAAATAGTCCGAATTTTGTACCCCTAAACCGCTTTGTGGCCCCTTGTTCCCCCGAATTGGTGTACCCTCCGAATAATGTGACGGGCTTTTCGGTTGTTTTTCATACTTTTTTGATACTTGGCTCTTCTCAAAATCAGTCTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37383</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>292029</contig_pos>
        <strand></strand>
        <context>CTTTTCGGTT[G/A]RTTTTCATAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTTCCCCCGAATTGGTGTACCCTCCGAATAATGTGACGGGCTTTTCGGTT</left_flank>
        <right_flank>TTTTTCATACTTTTTTGATACTTGGCTCTTCTCAAAATCAGTCTAACTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAAGCTTTTGTTTACTTTTTGAACAGAGACAATTATTTCCGTAGCAAGACCCCATAACCATCAACTTCTAAATTTATCTAGACTCCTGTAAGAGACATTTGAAAATAGTCCACTGACGGAATATATACGGAATATTTTTCACATTATAATGAACATTTCGTCAGTTGACTATTTTTTATACCTTTCACAGGAAATGTGATAAAGCGGCTCATAAGTGACATCGATTTCACTAAGTCTCTGAACACATTACTAACGCCTGTTCAAAACGTTGTTTTATTTTTTTCGAGAAACAGGAAATTATTTAGGCAAATAATAAAGAGGGTAGGTACAAAAATTTTGGGGTCATTGGAGAACAATACAATTTAGAGTTATATAATTCTCAACTCAGTGTTACAAAATACCTGAAATAGTCCGAATTTTGTACCCCTAAACCGCTTTGTGGCCCCTTGTTCCCCCGAATTGGTGTACCCTCCGAATAATGTGACGGGCTTTTCGGTTGTTTTTCATACTTTTTTGATACTTGGCTCTTCTCAAAATCAGTCTAACTTTTTAAATTTTATTTGATTAAAAAAAAGGTAAAATTCAAAGCTGTCCGCATCACTATCAGTGTAAAACAACAACAAAACGAAAATTCTGTTTCGTGAAGTTTATGAAATCAATGCAATGAAAGTAGATAATAATCCTGGACCGTTGAAAGGTTTCTGTCTGTGTGTCTGTGTGTCCATTCCTTCTCTTCTCCTATTTTCATTCTCTTCTCAACTCCATTGTTTGTTACACCATGACCAGCCTACCGGATCAAGTGTGAGGGTCAATTCACCTTTTCTCCCTCGTTTTCCCTCATCATAATACTCGAAAAACGAGAGATCACTAGAATCCAAGAGACGCAGACATATTAAACCAGGGATACGCAGAGAGGAAGCCTAGAAACCCGGTGAGTGAGAAAGAGACGCAGACGGTTAGAGTTTTTCCCTAACTTCTTGCTCCCCCAATTATTCTTTT</canonical>
            <polymorphic>GTAAGCTTTTGTTTACTTTTTGAACAGAGACAATTATTTCCGTAGCAAGACCCCATAACCATCAACTTCTAAATTTATCTAGACTCCTGTAAGAGACATTTGAAAATAGTCCACTGACGGAATATATACGGAATATTTTTCACATTATAATGAACATTTCGTCAGTTGACTATTTTTTATACCTTTCACAGGAAATGTGATAAAGCGGCTCATAAGTGACATCGATTTCACTAAGTCTCTGAACACATTACTAACGCCTGTTCAAAACGTTGTTTTATTTTTTTCGAGAAACAGGAAATTATTTAGGCAAATAATAAAGAGGGTAGGTACAAAAATTTTGGGGTCATTGGAGAACAATACAATTTAGAGTTATATAATTCTCAACTCAGTGTTACAAAATACCTGAAATAGTCCGAATTTTGTACCCCTAAACCGCTTTGTGGCCCCTTGTTCCCCCGAATTGGTGTACCCTCCGAATAATGTGACGGGCTTTTCGGTTRTTTTTCATACTTTTTTGATACTTGGCTCTTCTCAAAATCAGTCTAACTTTTTAAATTTTATTTGATTAAAAAAAAGGTAAAATTCAAAGCTGTCCGCATCACTATCAGTGTAAAACAACAACAAAACGAAAATTCTGTTTCGTGAAGTTTATGAAATCAATGCAATGAAAGTAGATAATAATCCTGGACCGTTGAAAGGTTTCTGTCTGTGTGTCTGTGTGTCCATTCCTTCTCTTCTCCTATTTTCATTCTCTTCTCAACTCCATTGTTTGTTACACCATGACCAGCCTACCGGATCAAGTGTGAGGGTCAATTCACCTTTTCTCCCTCGTTTTCCCTCATCATAATACTCGAAAAACGAGAGATCACTAGAATCCAAGAGACGCAGACATATTAAACCAGGGATACGCAGAGAGGAAGCCTAGAAACCCGGTGAGTGAGAAAGAGACGCAGACGGTTAGAGTTTTTCCCTAACTTCTTGCTCCCCCAATTATTCTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTGTTACAAAATACCTGAAATAG</pcr_primer_p1>
		<pcr_primer_p2>ACAGAATTTTCGTTTTGTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAGTGTTACAAAATACCTGAAATAGTCCGAATTTTGTACCCCTAAACCGCTTTGTGGCCCCTTGTTCCCCCGAATTGGTGTACCCTCCGAATAATGTGACGGGCTTTTCGGTTGTTTTTCATACTTTTTTGATACTTGGCTCTTCTCAAAATCAGTCTAACTTTTTAAATTTTATTTGATTAAAAAAAAGGTAAAATTCAAAGCTGTCCGCATCACTATCAGTGTAAAACAACAACAAAACGAAAATTCTGT</canonical_amplicon>
		<polymorphic_amplicon>CAGTGTTACAAAATACCTGAAATAGTCCGAATTTTGTACCCCTAAACCGCTTTGTGGCCCCTTGTTCCCCCGAATTGGTGTACCCTCCGAATAATGTGACGGGCTTTTCGGTTRTTTTTCATACTTTTTTGATACTTGGCTCTTCTCAAAATCAGTCTAACTTTTTAAATTTTATTTGATTAAAAAAAAGGTAAAATTCAAAGCTGTCCGCATCACTATCAGTGTAAAACAACAACAAAACGAAAATTCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37384</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>292030</contig_pos>
        <strand>+</strand>
        <context>TTTTCGGTTR[A/G]TTTTCATACT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCCCCGAATTGGTGTACCCTCCGAATAATGTGACGGGCTTTTCGGTTG</left_flank>
        <right_flank>TTTTCATACTTTTTTGATACTTGGCTCTTCTCAAAATCAGTCTAACTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGCTTTTGTTTACTTTTTGAACAGAGACAATTATTTCCGTAGCAAGACCCCATAACCATCAACTTCTAAATTTATCTAGACTCCTGTAAGAGACATTTGAAAATAGTCCACTGACGGAATATATACGGAATATTTTTCACATTATAATGAACATTTCGTCAGTTGACTATTTTTTATACCTTTCACAGGAAATGTGATAAAGCGGCTCATAAGTGACATCGATTTCACTAAGTCTCTGAACACATTACTAACGCCTGTTCAAAACGTTGTTTTATTTTTTTCGAGAAACAGGAAATTATTTAGGCAAATAATAAAGAGGGTAGGTACAAAAATTTTGGGGTCATTGGAGAACAATACAATTTAGAGTTATATAATTCTCAACTCAGTGTTACAAAATACCTGAAATAGTCCGAATTTTGTACCCCTAAACCGCTTTGTGGCCCCTTGTTCCCCCGAATTGGTGTACCCTCCGAATAATGTGACGGGCTTTTCGGTTGTTTTTCATACTTTTTTGATACTTGGCTCTTCTCAAAATCAGTCTAACTTTTTAAATTTTATTTGATTAAAAAAAAGGTAAAATTCAAAGCTGTCCGCATCACTATCAGTGTAAAACAACAACAAAACGAAAATTCTGTTTCGTGAAGTTTATGAAATCAATGCAATGAAAGTAGATAATAATCCTGGACCGTTGAAAGGTTTCTGTCTGTGTGTCTGTGTGTCCATTCCTTCTCTTCTCCTATTTTCATTCTCTTCTCAACTCCATTGTTTGTTACACCATGACCAGCCTACCGGATCAAGTGTGAGGGTCAATTCACCTTTTCTCCCTCGTTTTCCCTCATCATAATACTCGAAAAACGAGAGATCACTAGAATCCAAGAGACGCAGACATATTAAACCAGGGATACGCAGAGAGGAAGCCTAGAAACCCGGTGAGTGAGAAAGAGACGCAGACGGTTAGAGTTTTTCCCTAACTTCTTGCTCCCCCAATTATTCTTTTT</canonical>
            <polymorphic>TAAGCTTTTGTTTACTTTTTGAACAGAGACAATTATTTCCGTAGCAAGACCCCATAACCATCAACTTCTAAATTTATCTAGACTCCTGTAAGAGACATTTGAAAATAGTCCACTGACGGAATATATACGGAATATTTTTCACATTATAATGAACATTTCGTCAGTTGACTATTTTTTATACCTTTCACAGGAAATGTGATAAAGCGGCTCATAAGTGACATCGATTTCACTAAGTCTCTGAACACATTACTAACGCCTGTTCAAAACGTTGTTTTATTTTTTTCGAGAAACAGGAAATTATTTAGGCAAATAATAAAGAGGGTAGGTACAAAAATTTTGGGGTCATTGGAGAACAATACAATTTAGAGTTATATAATTCTCAACTCAGTGTTACAAAATACCTGAAATAGTCCGAATTTTGTACCCCTAAACCGCTTTGTGGCCCCTTGTTCCCCCGAATTGGTGTACCCTCCGAATAATGTGACGGGCTTTTCGGTTGRTTTTCATACTTTTTTGATACTTGGCTCTTCTCAAAATCAGTCTAACTTTTTAAATTTTATTTGATTAAAAAAAAGGTAAAATTCAAAGCTGTCCGCATCACTATCAGTGTAAAACAACAACAAAACGAAAATTCTGTTTCGTGAAGTTTATGAAATCAATGCAATGAAAGTAGATAATAATCCTGGACCGTTGAAAGGTTTCTGTCTGTGTGTCTGTGTGTCCATTCCTTCTCTTCTCCTATTTTCATTCTCTTCTCAACTCCATTGTTTGTTACACCATGACCAGCCTACCGGATCAAGTGTGAGGGTCAATTCACCTTTTCTCCCTCGTTTTCCCTCATCATAATACTCGAAAAACGAGAGATCACTAGAATCCAAGAGACGCAGACATATTAAACCAGGGATACGCAGAGAGGAAGCCTAGAAACCCGGTGAGTGAGAAAGAGACGCAGACGGTTAGAGTTTTTCCCTAACTTCTTGCTCCCCCAATTATTCTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTGTTACAAAATACCTGAAATAG</pcr_primer_p1>
		<pcr_primer_p2>ACAGAATTTTCGTTTTGTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAGTGTTACAAAATACCTGAAATAGTCCGAATTTTGTACCCCTAAACCGCTTTGTGGCCCCTTGTTCCCCCGAATTGGTGTACCCTCCGAATAATGTGACGGGCTTTTCGGTTGTTTTTCATACTTTTTTGATACTTGGCTCTTCTCAAAATCAGTCTAACTTTTTAAATTTTATTTGATTAAAAAAAAGGTAAAATTCAAAGCTGTCCGCATCACTATCAGTGTAAAACAACAACAAAACGAAAATTCTGT</canonical_amplicon>
		<polymorphic_amplicon>CAGTGTTACAAAATACCTGAAATAGTCCGAATTTTGTACCCCTAAACCGCTTTGTGGCCCCTTGTTCCCCCGAATTGGTGTACCCTCCGAATAATGTGACGGGCTTTTCGGTTGRTTTTCATACTTTTTTGATACTTGGCTCTTCTCAAAATCAGTCTAACTTTTTAAATTTTATTTGATTAAAAAAAAGGTAAAATTCAAAGCTGTCCGCATCACTATCAGTGTAAAACAACAACAAAACGAAAATTCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37385</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>292144</contig_pos>
        <strand>+</strand>
        <context>TCAGTGTAAA[A/G]CAACAACAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTAAAAAAAAGGTAAAATTCAAAGCTGTCCGCATCACTATCAGTGTAAA</left_flank>
        <right_flank>CAACAACAAAACGAAAATTCTGTTTCGTGAAGTTTATGAAATCAATGCAA</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGGAATATATACGGAATATTTTTCACATTATAATGAACATTTCGTCAGTTGACTATTTTTTATACCTTTCACAGGAAATGTGATAAAGCGGCTCATAAGTGACATCGATTTCACTAAGTCTCTGAACACATTACTAACGCCTGTTCAAAACGTTGTTTTATTTTTTTCGAGAAACAGGAAATTATTTAGGCAAATAATAAAGAGGGTAGGTACAAAAATTTTGGGGTCATTGGAGAACAATACAATTTAGAGTTATATAATTCTCAACTCAGTGTTACAAAATACCTGAAATAGTCCGAATTTTGTACCCCTAAACCGCTTTGTGGCCCCTTGTTCCCCCGAATTGGTGTACCCTCCGAATAATGTGACGGGCTTTTCGGTTGTTTTTCATACTTTTTTGATACTTGGCTCTTCTCAAAATCAGTCTAACTTTTTAAATTTTATTTGATTAAAAAAAAGGTAAAATTCAAAGCTGTCCGCATCACTATCAGTGTAAAACAACAACAAAACGAAAATTCTGTTTCGTGAAGTTTATGAAATCAATGCAATGAAAGTAGATAATAATCCTGGACCGTTGAAAGGTTTCTGTCTGTGTGTCTGTGTGTCCATTCCTTCTCTTCTCCTATTTTCATTCTCTTCTCAACTCCATTGTTTGTTACACCATGACCAGCCTACCGGATCAAGTGTGAGGGTCAATTCACCTTTTCTCCCTCGTTTTCCCTCATCATAATACTCGAAAAACGAGAGATCACTAGAATCCAAGAGACGCAGACATATTAAACCAGGGATACGCAGAGAGGAAGCCTAGAAACCCGGTGAGTGAGAAAGAGACGCAGACGGTTAGAGTTTTTCCCTAACTTCTTGCTCCCCCAATTATTCTTTTTCTTACCTTATTTCGGTCCCTTTTTCTGACTCTTTCTCGTTCTCTCCATTTTTATTAACATATTTCATTCTGTTGAGTCTCCCCCCGTTTTTCCAGTTTTACACCATCCATCATT</canonical>
            <polymorphic>GACGGAATATATACGGAATATTTTTCACATTATAATGAACATTTCGTCAGTTGACTATTTTTTATACCTTTCACAGGAAATGTGATAAAGCGGCTCATAAGTGACATCGATTTCACTAAGTCTCTGAACACATTACTAACGCCTGTTCAAAACGTTGTTTTATTTTTTTCGAGAAACAGGAAATTATTTAGGCAAATAATAAAGAGGGTAGGTACAAAAATTTTGGGGTCATTGGAGAACAATACAATTTAGAGTTATATAATTCTCAACTCAGTGTTACAAAATACCTGAAATAGTCCGAATTTTGTACCCCTAAACCGCTTTGTGGCCCCTTGTTCCCCCGAATTGGTGTACCCTCCGAATAATGTGACGGGCTTTTCGGTTGTTTTTCATACTTTTTTGATACTTGGCTCTTCTCAAAATCAGTCTAACTTTTTAAATTTTATTTGATTAAAAAAAAGGTAAAATTCAAAGCTGTCCGCATCACTATCAGTGTAAARCAACAACAAAACGAAAATTCTGTTTCGTGAAGTTTATGAAATCAATGCAATGAAAGTAGATAATAATCCTGGACCGTTGAAAGGTTTCTGTCTGTGTGTCTGTGTGTCCATTCCTTCTCTTCTCCTATTTTCATTCTCTTCTCAACTCCATTGTTTGTTACACCATGACCAGCCTACCGGATCAAGTGTGAGGGTCAATTCACCTTTTCTCCCTCGTTTTCCCTCATCATAATACTCGAAAAACGAGAGATCACTAGAATCCAAGAGACGCAGACATATTAAACCAGGGATACGCAGAGAGGAAGCCTAGAAACCCGGTGAGTGAGAAAGAGACGCAGACGGTTAGAGTTTTTCCCTAACTTCTTGCTCCCCCAATTATTCTTTTTCTTACCTTATTTCGGTCCCTTTTTCTGACTCTTTCTCGTTCTCTCCATTTTTATTAACATATTTCATTCTGTTGAGTCTCCCCCCGTTTTTCCAGTTTTACACCATCCATCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACCCTCCGAATAATGTGAC</pcr_primer_p1>
		<pcr_primer_p2>ACACAGACAGAAACCTTTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTACCCTCCGAATAATGTGACGGGCTTTTCGGTTGTTTTTCATACTTTTTTGATACTTGGCTCTTCTCAAAATCAGTCTAACTTTTTAAATTTTATTTGATTAAAAAAAAGGTAAAATTCAAAGCTGTCCGCATCACTATCAGTGTAAAACAACAACAAAACGAAAATTCTGTTTCGTGAAGTTTATGAAATCAATGCAATGAAAGTAGATAATAATCCTGGACCGTTGAAAGGTTTCTGTCTGTGT</canonical_amplicon>
		<polymorphic_amplicon>GTACCCTCCGAATAATGTGACGGGCTTTTCGGTTGTTTTTCATACTTTTTTGATACTTGGCTCTTCTCAAAATCAGTCTAACTTTTTAAATTTTATTTGATTAAAAAAAAGGTAAAATTCAAAGCTGTCCGCATCACTATCAGTGTAAARCAACAACAAAACGAAAATTCTGTTTCGTGAAGTTTATGAAATCAATGCAATGAAAGTAGATAATAATCCTGGACCGTTGAAAGGTTTCTGTCTGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37386</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>292286</contig_pos>
        <strand>+</strand>
        <context>CATTCTCTTC[C/T]CAACTCCATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGTGTGTCTGTGTGTCCATTCCTTCTCTTCTCCTATTTTCATTCTCTTC</left_flank>
        <right_flank>CAACTCCATTGTTTGTTACACCATGACCAGCCTACCGGATCAAGTGTGAG</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTTCAAAACGTTGTTTTATTTTTTTCGAGAAACAGGAAATTATTTAGGCAAATAATAAAGAGGGTAGGTACAAAAATTTTGGGGTCATTGGAGAACAATACAATTTAGAGTTATATAATTCTCAACTCAGTGTTACAAAATACCTGAAATAGTCCGAATTTTGTACCCCTAAACCGCTTTGTGGCCCCTTGTTCCCCCGAATTGGTGTACCCTCCGAATAATGTGACGGGCTTTTCGGTTGTTTTTCATACTTTTTTGATACTTGGCTCTTCTCAAAATCAGTCTAACTTTTTAAATTTTATTTGATTAAAAAAAAGGTAAAATTCAAAGCTGTCCGCATCACTATCAGTGTAAAACAACAACAAAACGAAAATTCTGTTTCGTGAAGTTTATGAAATCAATGCAATGAAAGTAGATAATAATCCTGGACCGTTGAAAGGTTTCTGTCTGTGTGTCTGTGTGTCCATTCCTTCTCTTCTCCTATTTTCATTCTCTTCTCAACTCCATTGTTTGTTACACCATGACCAGCCTACCGGATCAAGTGTGAGGGTCAATTCACCTTTTCTCCCTCGTTTTCCCTCATCATAATACTCGAAAAACGAGAGATCACTAGAATCCAAGAGACGCAGACATATTAAACCAGGGATACGCAGAGAGGAAGCCTAGAAACCCGGTGAGTGAGAAAGAGACGCAGACGGTTAGAGTTTTTCCCTAACTTCTTGCTCCCCCAATTATTCTTTTTCTTACCTTATTTCGGTCCCTTTTTCTGACTCTTTCTCGTTCTCTCCATTTTTATTAACATATTTCATTCTGTTGAGTCTCCCCCCGTTTTTCCAGTTTTACACCATCCATCATTTCCATATTTGTTCAGGCCGAATTTTTGGATTCATGGAAGAATAGAATAGGGAAAAAGGAGAACCTATGTACCTTTTTACTCAATTTTCTGTAGGAGTTTTGGTTTAATTTTTAATTCTTTTATATTACTGAAGCTTTTTAGA</canonical>
            <polymorphic>CTGTTCAAAACGTTGTTTTATTTTTTTCGAGAAACAGGAAATTATTTAGGCAAATAATAAAGAGGGTAGGTACAAAAATTTTGGGGTCATTGGAGAACAATACAATTTAGAGTTATATAATTCTCAACTCAGTGTTACAAAATACCTGAAATAGTCCGAATTTTGTACCCCTAAACCGCTTTGTGGCCCCTTGTTCCCCCGAATTGGTGTACCCTCCGAATAATGTGACGGGCTTTTCGGTTGTTTTTCATACTTTTTTGATACTTGGCTCTTCTCAAAATCAGTCTAACTTTTTAAATTTTATTTGATTAAAAAAAAGGTAAAATTCAAAGCTGTCCGCATCACTATCAGTGTAAAACAACAACAAAACGAAAATTCTGTTTCGTGAAGTTTATGAAATCAATGCAATGAAAGTAGATAATAATCCTGGACCGTTGAAAGGTTTCTGTCTGTGTGTCTGTGTGTCCATTCCTTCTCTTCTCCTATTTTCATTCTCTTCYCAACTCCATTGTTTGTTACACCATGACCAGCCTACCGGATCAAGTGTGAGGGTCAATTCACCTTTTCTCCCTCGTTTTCCCTCATCATAATACTCGAAAAACGAGAGATCACTAGAATCCAAGAGACGCAGACATATTAAACCAGGGATACGCAGAGAGGAAGCCTAGAAACCCGGTGAGTGAGAAAGAGACGCAGACGGTTAGAGTTTTTCCCTAACTTCTTGCTCCCCCAATTATTCTTTTTCTTACCTTATTTCGGTCCCTTTTTCTGACTCTTTCTCGTTCTCTCCATTTTTATTAACATATTTCATTCTGTTGAGTCTCCCCCCGTTTTTCCAGTTTTACACCATCCATCATTTCCATATTTGTTCAGGCCGAATTTTTGGATTCATGGAAGAATAGAATAGGGAAAAAGGAGAACCTATGTACCTTTTTACTCAATTTTCTGTAGGAGTTTTGGTTTAATTTTTAATTCTTTTATATTACTGAAGCTTTTTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTCTGTTTCGTGAAGTTTA</pcr_primer_p1>
		<pcr_primer_p2>GGATTCTAGTGATCTCTCGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAATTCTGTTTCGTGAAGTTTATGAAATCAATGCAATGAAAGTAGATAATAATCCTGGACCGTTGAAAGGTTTCTGTCTGTGTGTCTGTGTGTCCATTCCTTCTCTTCTCCTATTTTCATTCTCTTCTCAACTCCATTGTTTGTTACACCATGACCAGCCTACCGGATCAAGTGTGAGGGTCAATTCACCTTTTCTCCCTCGTTTTCCCTCATCATAATACTCGAAAAACGAGAGATCACTAGAATCC</canonical_amplicon>
		<polymorphic_amplicon>AAAATTCTGTTTCGTGAAGTTTATGAAATCAATGCAATGAAAGTAGATAATAATCCTGGACCGTTGAAAGGTTTCTGTCTGTGTGTCTGTGTGTCCATTCCTTCTCTTCTCCTATTTTCATTCTCTTCYCAACTCCATTGTTTGTTACACCATGACCAGCCTACCGGATCAAGTGTGAGGGTCAATTCACCTTTTCTCCCTCGTTTTCCCTCATCATAATACTCGAAAAACGAGAGATCACTAGAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37387</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>293838</contig_pos>
        <strand>+</strand>
        <context>AGTACTTCCG[C/G]TTTTTTTTSC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCTTTTATTACAGCGACCTAGAAAGTTCTCGAAAAACTTAGTACTTCCG</left_flank>
        <right_flank>TTTTTTTTGCTCCAGAATTTCACGAATTCTTGCTCTTTTTTCCAAAAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCACCCTCACAAGTTCAACTCCTTGAGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCACCTTTAAGAAAAATCACAAACTTTGGATCAAAAGTTTTTTTTTAAATTTTCCAGTTTTTTAATTTTTTTTTCGCCTTCCTCGAAAATCAAGTTCATTCAATAATTTCGAAACAGTAAATTTTTTCCAAAATGTTTTTCCAGAATGGAATTTTTCATGACAGAAAATGACTCATTTCATTTATTCCGGCGTCACCGAATTCCGTTGTTTTTGATTTTTATATGGTTCTTTTTTCCCGAATTTCCATTCTTTTATTACAGCGACCTAGAAAGTTCTCGAAAAACTTAGTACTTCCGTTTTTTTTTGCTCCAGAATTTCACGAATTCTTGCTCTTTTTTCCAAAAGAAGTGCTTCCTGTCCATAAAGAAGGTCCGTTTTGTTGTCCATAGTTACCAAAACTAAAGGGAGGGAGGCTAAGAAATCGGAAGCACTTATTTCTATCCTTTTTGTGTTCTTTTTCCCGATTTCTCTGCGTCTCTAATGACTTCTCCAATCAGAAATACATATACATTGTATTTTCATAGGAAAAGTTTTCAAGGTATAAGATGATAGGCAACACACACACACACTGACGAACAGAAAAATCACTCCTCAAACTTATGCCAAAGCCCTCTCTTTTTCGTAAAGTTTCTGTAATATCTAAAAATGAAGCGTTTGTAGGAAAATCATTACTGCTAGTAACTTCTCCGAGTTTAAAATTGTTTGCTGAAACTGTAAAAAAAATTCTGCAACATATTATCTCCCTTACAGTGAATTTNNNNNNNNNNCGATTATTTTGAATAGACAATACTGAGTCT</canonical>
            <polymorphic>CGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACCCTCAATCCTCACCCTCACAAGTTCAACTCCTTGAGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCACCTTTAAGAAAAATCACAAACTTTGGATCAAAAGTTTTTTTTTAAATTTTCCAGTTTTTTAATTTTTTTTTCGCCTTCCTCGAAAATCAAGTTCATTCAATAATTTCGAAACAGTAAATTTTTTCCAAAATGTTTTTCCAGAATGGAATTTTTCATGACAGAAAATGACTCATTTCATTTATTCCGGCGTCACCGAATTCCGTTGTTTTTGATTTTTATATGGTTCTTTTTTCCCGAATTTCCATTCTTTTATTACAGCGACCTAGAAAGTTCTCGAAAAACTTAGTACTTCCGSTTTTTTTTGCTCCAGAATTTCACGAATTCTTGCTCTTTTTTCCAAAAGAAGTGCTTCCTGTCCATAAAGAAGGTCCGTTTTGTTGTCCATAGTTACCAAAACTAAAGGGAGGGAGGCTAAGAAATCGGAAGCACTTATTTCTATCCTTTTTGTGTTCTTTTTCCCGATTTCTCTGCGTCTCTAATGACTTCTCCAATCAGAAATACATATACATTGTATTTTCATAGGAAAAGTTTTCAAGGTATAAGATGATAGGCAACACACACACACACTGACGAACAGAAAAATCACTCCTCAAACTTATGCCAAAGCCCTCTCTTTTTCGTAAAGTTTCTGTAATATCTAAAAATGAAGCGTTTGTAGGAAAATCATTACTGCTAGTAACTTCTCCGAGTTTAAAATTGTTTGCTGAAACTGTAAAAAAAATTCTGCAACATATTATCTCCCTTACAGTGAATTTNNNNNNNNNNCGATTATTTTGAATAGACAATACTGAGTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGTTGTTTTTGATTTTTATATG</pcr_primer_p1>
		<pcr_primer_p2>ACAAAAAGGATAGAAATAAGTGCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCGTTGTTTTTGATTTTTATATGGTTCTTTTTTCCCGAATTTCCATTCTTTTATTACAGCGACCTAGAAAGTTCTCGAAAAACTTAGTACTTCCGTTTTTTTTTGCTCCAGAATTTCACGAATTCTTGCTCTTTTTTCCAAAAGAAGTGCTTCCTGTCCATAAAGAAGGTCCGTTTTGTTGTCCATAGTTACCAAAACTAAAGGGAGGGAGGCTAAGAAATCGGAAGCACTTATTTCTATCCTTTTTGT</canonical_amplicon>
		<polymorphic_amplicon>CCGTTGTTTTTGATTTTTATATGGTTCTTTTTTCCCGAATTTCCATTCTTTTATTACAGCGACCTAGAAAGTTCTCGAAAAACTTAGTACTTCCGSTTTTTTTTGCTCCAGAATTTCACGAATTCTTGCTCTTTTTTCCAAAAGAAGTGCTTCCTGTCCATAAAGAAGGTCCGTTTTGTTGTCCATAGTTACCAAAACTAAAGGGAGGGAGGCTAAGAAATCGGAAGCACTTATTTCTATCCTTTTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37388</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>293945</contig_pos>
        <strand>+</strand>
        <context>CAAAACTAAA[A/G]GGAGGGAGGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTGTCCATAAAGAAGGTCCGTTTTGTTGTCCATAGTTACCAAAACTAAA</left_flank>
        <right_flank>GGAGGGAGGCTAAGAAATCGGAAGCACTTATTTCTATCCTTTTTGTGTTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCGGCGCCGCACCCTCAATCCTCACCCTCACAAGTTCAACTCCTTGAGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCACCTTTAAGAAAAATCACAAACTTTGGATCAAAAGTTTTTTTTTAAATTTTCCAGTTTTTTAATTTTTTTTTCGCCTTCCTCGAAAATCAAGTTCATTCAATAATTTCGAAACAGTAAATTTTTTCCAAAATGTTTTTCCAGAATGGAATTTTTCATGACAGAAAATGACTCATTTCATTTATTCCGGCGTCACCGAATTCCGTTGTTTTTGATTTTTATATGGTTCTTTTTTCCCGAATTTCCATTCTTTTATTACAGCGACCTAGAAAGTTCTCGAAAAACTTAGTACTTCCGTTTTTTTTTGCTCCAGAATTTCACGAATTCTTGCTCTTTTTTCCAAAAGAAGTGCTTCCTGTCCATAAAGAAGGTCCGTTTTGTTGTCCATAGTTACCAAAACTAAAGGGAGGGAGGCTAAGAAATCGGAAGCACTTATTTCTATCCTTTTTGTGTTCTTTTTCCCGATTTCTCTGCGTCTCTAATGACTTCTCCAATCAGAAATACATATACATTGTATTTTCATAGGAAAAGTTTTCAAGGTATAAGATGATAGGCAACACACACACACACTGACGAACAGAAAAATCACTCCTCAAACTTATGCCAAAGCCCTCTCTTTTTCGTAAAGTTTCTGTAATATCTAAAAATGAAGCGTTTGTAGGAAAATCATTACTGCTAGTAACTTCTCCGAGTTTAAAATTGTTTGCTGAAACTGTAAAAAAAATTCTGCAACATATTATCTCCCTTACAGTGAATTTNNNNNNNNNNCGATTATTTTGAATAGACAATACTGAGTCTGCAAACACGGGGTGTCATTTTTTAAATTTAACAATATGGTGTAATTTTCAAAATCTGTTCATTGTATTTCTGGAATTCTACATACTTTTTTTCTAAATGAAAACTTA</canonical>
            <polymorphic>AGCGGCGCCGCACCCTCAATCCTCACCCTCACAAGTTCAACTCCTTGAGGGCATCTTTGAACGGAATTTCGAGAACATTATTTTTTTCATGTCCCCCACCTTTAAGAAAAATCACAAACTTTGGATCAAAAGTTTTTTTTTAAATTTTCCAGTTTTTTAATTTTTTTTTCGCCTTCCTCGAAAATCAAGTTCATTCAATAATTTCGAAACAGTAAATTTTTTCCAAAATGTTTTTCCAGAATGGAATTTTTCATGACAGAAAATGACTCATTTCATTTATTCCGGCGTCACCGAATTCCGTTGTTTTTGATTTTTATATGGTTCTTTTTTCCCGAATTTCCATTCTTTTATTACAGCGACCTAGAAAGTTCTCGAAAAACTTAGTACTTCCGTTTTTTTTTGCTCCAGAATTTCACGAATTCTTGCTCTTTTTTCCAAAAGAAGTGCTTCCTGTCCATAAAGAAGGTCCGTTTTGTTGTCCATAGTTACCAAAACTAAARGGAGGGAGGCTAAGAAATCGGAAGCACTTATTTCTATCCTTTTTGTGTTCTTTTTCCCGATTTCTCTGCGTCTCTAATGACTTCTCCAATCAGAAATACATATACATTGTATTTTCATAGGAAAAGTTTTCAAGGTATAAGATGATAGGCAACACACACACACACTGACGAACAGAAAAATCACTCCTCAAACTTATGCCAAAGCCCTCTCTTTTTCGTAAAGTTTCTGTAATATCTAAAAATGAAGCGTTTGTAGGAAAATCATTACTGCTAGTAACTTCTCCGAGTTTAAAATTGTTTGCTGAAACTGTAAAAAAAATTCTGCAACATATTATCTCCCTTACAGTGAATTTNNNNNNNNNNCGATTATTTTGAATAGACAATACTGAGTCTGCAAACACGGGGTGTCATTTTTTAAATTTAACAATATGGTGTAATTTTCAAAATCTGTTCATTGTATTTCTGGAATTCTACATACTTTTTTTCTAAATGAAAACTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCACGAATTCTTGCTCTT</pcr_primer_p1>
		<pcr_primer_p2>GTGTGTGTTGCCTATCATCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTCACGAATTCTTGCTCTTTTTTCCAAAAGAAGTGCTTCCTGTCCATAAAGAAGGTCCGTTTTGTTGTCCATAGTTACCAAAACTAAAGGGAGGGAGGCTAAGAAATCGGAAGCACTTATTTCTATCCTTTTTGTGTTCTTTTTCCCGATTTCTCTGCGTCTCTAATGACTTCTCCAATCAGAAATACATATACATTGTATTTTCATAGGAAAAGTTTTCAAGGTATAAGATGATAGGCAACACACAC</canonical_amplicon>
		<polymorphic_amplicon>ATTTCACGAATTCTTGCTCTTTTTTCCAAAAGAAGTGCTTCCTGTCCATAAAGAAGGTCCGTTTTGTTGTCCATAGTTACCAAAACTAAARGGAGGGAGGCTAAGAAATCGGAAGCACTTATTTCTATCCTTTTTGTGTTCTTTTTCCCGATTTCTCTGCGTCTCTAATGACTTCTCCAATCAGAAATACATATACATTGTATTTTCATAGGAAAAGTTTTCAAGGTATAAGATGATAGGCAACACACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37389</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>296324</contig_pos>
        <strand>+</strand>
        <context>TCGATTCTCT[C/T]AGAATAATCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTAATAGGGATCCTTTAAAAAATAATTTTTATCAAATAATCGATTCTCT</left_flank>
        <right_flank>AGAATAATCAGATCCAATTTGAAAACATTCAAAAACTTTTAGTATCAGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCGTTTTAACAGTGAAATAAAATGATGAACCCAAGAAAAACTGTGAAAGTCACCGGAAAGTCGAAAAAGGCAATTAACATGAAAATAGGCTTAAAAATATTGCAATTGGCTTTTGCGCCTTTAACGGGACCCCCGCTTTTGAAGTTTTTCGATGTCGGACAATATTTTGTCATTGATCAATCAGCTTTTCGAAATCAACCAAAAATAAATGTATTGTGTGGAACAGAAAAAATATTTTTAAAATTAAAAGCAAAATAAATCCAAGAAATCGATTTTCTCCTGATAATCAAGCCTATTTGAAATTGGCGAAAGTTCTTGTAAAAAATTTCAGAAGCTTCTTTATCGTATTATAACATCTCTTTGCATGTTAACGATCTAATAATTTTTGAAGTCAACCAAAGTGAAAATCATTTTGTGAATCAGAAAAAAATACATTTAAACAATGTCCGTAATAGGGATCCTTTAAAAAATAATTTTTATCAAATAATCGATTCTCTCAGAATAATCAGATCCAATTTGAAAACATTCAAAAACTTTTAGTATCAGGTTGTTAGAGCAACCTCTCTTTACTAAAGCCACCTTGTAGTCACTTTTTCTCTAATCCTCTCCACCTCCAACACTCTCTCCATCTATCCAGTTTTGCTCCGTCCGATCAGGGCGTCTAAACCAACTCAACTTGGACTAAGTCAACAAAAATACAGACTTTTCTGTCTCTTTTCTTTTCTCCGCATACCATCTCCATTCACATTTTTCCTCTCGACGGGGGCTCTTTTTCTTTTACTGTCTGCATTTCTCTCTATTTCTTTTTTGTCTTCAAAGTTTTTCTTGTTTCATTTTTTGTGTCTTCTTCTTCTTCTTCTTCTTCATTTTCGCACCTGTCTCAATTTTTGACAGTTTTCTCCGTCAACTTTTTTTTCGAAAAAAAAAACGTTTCCCGCCTCTTTTACATGTTTGACTACAGGGTTTAACCTAGTTTTCTTAGTGGTCTTCTTGTCATA</canonical>
            <polymorphic>CATCGTTTTAACAGTGAAATAAAATGATGAACCCAAGAAAAACTGTGAAAGTCACCGGAAAGTCGAAAAAGGCAATTAACATGAAAATAGGCTTAAAAATATTGCAATTGGCTTTTGCGCCTTTAACGGGACCCCCGCTTTTGAAGTTTTTCGATGTCGGACAATATTTTGTCATTGATCAATCAGCTTTTCGAAATCAACCAAAAATAAATGTATTGTGTGGAACAGAAAAAATATTTTTAAAATTAAAAGCAAAATAAATCCAAGAAATCGATTTTCTCCTGATAATCAAGCCTATTTGAAATTGGCGAAAGTTCTTGTAAAAAATTTCAGAAGCTTCTTTATCGTATTATAACATCTCTTTGCATGTTAACGATCTAATAATTTTTGAAGTCAACCAAAGTGAAAATCATTTTGTGAATCAGAAAAAAATACATTTAAACAATGTCCGTAATAGGGATCCTTTAAAAAATAATTTTTATCAAATAATCGATTCTCTYAGAATAATCAGATCCAATTTGAAAACATTCAAAAACTTTTAGTATCAGGTTGTTAGAGCAACCTCTCTTTACTAAAGCCACCTTGTAGTCACTTTTTCTCTAATCCTCTCCACCTCCAACACTCTCTCCATCTATCCAGTTTTGCTCCGTCCGATCAGGGCGTCTAAACCAACTCAACTTGGACTAAGTCAACAAAAATACAGACTTTTCTGTCTCTTTTCTTTTCTCCGCATACCATCTCCATTCACATTTTTCCTCTCGACGGGGGCTCTTTTTCTTTTACTGTCTGCATTTCTCTCTATTTCTTTTTTGTCTTCAAAGTTTTTCTTGTTTCATTTTTTGTGTCTTCTTCTTCTTCTTCTTCTTCATTTTCGCACCTGTCTCAATTTTTGACAGTTTTCTCCGTCAACTTTTTTTTCGAAAAAAAAAACGTTTCCCGCCTCTTTTACATGTTTGACTACAGGGTTTAACCTAGTTTTCTTAGTGGTCTTCTTGTCATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>348 173 159 142 92 77 9</canonical_bands>
                <polymorphic_bands>348 173 159 142 92 86</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGCATGTTAACGATCTAATAA</pcr_primer_p1>
		<pcr_primer_p2>GGAGAGGATTAGAGAAAAAGTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGCATGTTAACGATCTAATAATTTTTGAAGTCAACCAAAGTGAAAATCATTTTGTGAATCAGAAAAAAATACATTTAAACAATGTCCGTAATAGGGATCCTTTAAAAAATAATTTTTATCAAATAATCGATTCTCTCAGAATAATCAGATCCAATTTGAAAACATTCAAAAACTTTTAGTATCAGGTTGTTAGAGCAACCTCTCTTTACTAAAGCCACCTTGTAGTCACTTTTTCTCTAATCCTCTCC</canonical_amplicon>
		<polymorphic_amplicon>TTTGCATGTTAACGATCTAATAATTTTTGAAGTCAACCAAAGTGAAAATCATTTTGTGAATCAGAAAAAAATACATTTAAACAATGTCCGTAATAGGGATCCTTTAAAAAATAATTTTTATCAAATAATCGATTCTCTYAGAATAATCAGATCCAATTTGAAAACATTCAAAAACTTTTAGTATCAGGTTGTTAGAGCAACCTCTCTTTACTAAAGCCACCTTGTAGTCACTTTTTCTCTAATCCTCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37390</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>296349</contig_pos>
        <strand>+</strand>
        <context>CAATTTGAAA[A/G]CATTCAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTTATCAAATAATCGATTCTCTCAGAATAATCAGATCCAATTTGAAA</left_flank>
        <right_flank>CATTCAAAAACTTTTAGTATCAGGTTGTTAGAGCAACCTCTCTTTACTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGAACCCAAGAAAAACTGTGAAAGTCACCGGAAAGTCGAAAAAGGCAATTAACATGAAAATAGGCTTAAAAATATTGCAATTGGCTTTTGCGCCTTTAACGGGACCCCCGCTTTTGAAGTTTTTCGATGTCGGACAATATTTTGTCATTGATCAATCAGCTTTTCGAAATCAACCAAAAATAAATGTATTGTGTGGAACAGAAAAAATATTTTTAAAATTAAAAGCAAAATAAATCCAAGAAATCGATTTTCTCCTGATAATCAAGCCTATTTGAAATTGGCGAAAGTTCTTGTAAAAAATTTCAGAAGCTTCTTTATCGTATTATAACATCTCTTTGCATGTTAACGATCTAATAATTTTTGAAGTCAACCAAAGTGAAAATCATTTTGTGAATCAGAAAAAAATACATTTAAACAATGTCCGTAATAGGGATCCTTTAAAAAATAATTTTTATCAAATAATCGATTCTCTCAGAATAATCAGATCCAATTTGAAAACATTCAAAAACTTTTAGTATCAGGTTGTTAGAGCAACCTCTCTTTACTAAAGCCACCTTGTAGTCACTTTTTCTCTAATCCTCTCCACCTCCAACACTCTCTCCATCTATCCAGTTTTGCTCCGTCCGATCAGGGCGTCTAAACCAACTCAACTTGGACTAAGTCAACAAAAATACAGACTTTTCTGTCTCTTTTCTTTTCTCCGCATACCATCTCCATTCACATTTTTCCTCTCGACGGGGGCTCTTTTTCTTTTACTGTCTGCATTTCTCTCTATTTCTTTTTTGTCTTCAAAGTTTTTCTTGTTTCATTTTTTGTGTCTTCTTCTTCTTCTTCTTCTTCATTTTCGCACCTGTCTCAATTTTTGACAGTTTTCTCCGTCAACTTTTTTTTCGAAAAAAAAAACGTTTCCCGCCTCTTTTACATGTTTGACTACAGGGTTTAACCTAGTTTTCTTAGTGGTCTTCTTGTCATACCACTACTTTTTTTTTGGAAAAAAT</canonical>
            <polymorphic>GATGAACCCAAGAAAAACTGTGAAAGTCACCGGAAAGTCGAAAAAGGCAATTAACATGAAAATAGGCTTAAAAATATTGCAATTGGCTTTTGCGCCTTTAACGGGACCCCCGCTTTTGAAGTTTTTCGATGTCGGACAATATTTTGTCATTGATCAATCAGCTTTTCGAAATCAACCAAAAATAAATGTATTGTGTGGAACAGAAAAAATATTTTTAAAATTAAAAGCAAAATAAATCCAAGAAATCGATTTTCTCCTGATAATCAAGCCTATTTGAAATTGGCGAAAGTTCTTGTAAAAAATTTCAGAAGCTTCTTTATCGTATTATAACATCTCTTTGCATGTTAACGATCTAATAATTTTTGAAGTCAACCAAAGTGAAAATCATTTTGTGAATCAGAAAAAAATACATTTAAACAATGTCCGTAATAGGGATCCTTTAAAAAATAATTTTTATCAAATAATCGATTCTCTCAGAATAATCAGATCCAATTTGAAARCATTCAAAAACTTTTAGTATCAGGTTGTTAGAGCAACCTCTCTTTACTAAAGCCACCTTGTAGTCACTTTTTCTCTAATCCTCTCCACCTCCAACACTCTCTCCATCTATCCAGTTTTGCTCCGTCCGATCAGGGCGTCTAAACCAACTCAACTTGGACTAAGTCAACAAAAATACAGACTTTTCTGTCTCTTTTCTTTTCTCCGCATACCATCTCCATTCACATTTTTCCTCTCGACGGGGGCTCTTTTTCTTTTACTGTCTGCATTTCTCTCTATTTCTTTTTTGTCTTCAAAGTTTTTCTTGTTTCATTTTTTGTGTCTTCTTCTTCTTCTTCTTCTTCATTTTCGCACCTGTCTCAATTTTTGACAGTTTTCTCCGTCAACTTTTTTTTCGAAAAAAAAAACGTTTCCCGCCTCTTTTACATGTTTGACTACAGGGTTTAACCTAGTTTTCTTAGTGGTCTTCTTGTCATACCACTACTTTTTTTTTGGAAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGCATGTTAACGATCTAATAA</pcr_primer_p1>
		<pcr_primer_p2>GGAGAGGATTAGAGAAAAAGTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGCATGTTAACGATCTAATAATTTTTGAAGTCAACCAAAGTGAAAATCATTTTGTGAATCAGAAAAAAATACATTTAAACAATGTCCGTAATAGGGATCCTTTAAAAAATAATTTTTATCAAATAATCGATTCTCTCAGAATAATCAGATCCAATTTGAAAACATTCAAAAACTTTTAGTATCAGGTTGTTAGAGCAACCTCTCTTTACTAAAGCCACCTTGTAGTCACTTTTTCTCTAATCCTCTCC</canonical_amplicon>
		<polymorphic_amplicon>TTTGCATGTTAACGATCTAATAATTTTTGAAGTCAACCAAAGTGAAAATCATTTTGTGAATCAGAAAAAAATACATTTAAACAATGTCCGTAATAGGGATCCTTTAAAAAATAATTTTTATCAAATAATCGATTCTCTCAGAATAATCAGATCCAATTTGAAARCATTCAAAAACTTTTAGTATCAGGTTGTTAGAGCAACCTCTCTTTACTAAAGCCACCTTGTAGTCACTTTTTCTCTAATCCTCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37391</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>296587</contig_pos>
        <strand>+</strand>
        <context>TTCCTCTCGA[C/T]GGGGGCTCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCTTTTCTTTTCTCCGCATACCATCTCCATTCACATTTTTCCTCTCGA</left_flank>
        <right_flank>GGGGGCTCTTTTTCTTTTACTGTCTGCATTTCTCTCTATTTCTTTTTTGT</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAGAAATCGATTTTCTCCTGATAATCAAGCCTATTTGAAATTGGCGAAAGTTCTTGTAAAAAATTTCAGAAGCTTCTTTATCGTATTATAACATCTCTTTGCATGTTAACGATCTAATAATTTTTGAAGTCAACCAAAGTGAAAATCATTTTGTGAATCAGAAAAAAATACATTTAAACAATGTCCGTAATAGGGATCCTTTAAAAAATAATTTTTATCAAATAATCGATTCTCTCAGAATAATCAGATCCAATTTGAAAACATTCAAAAACTTTTAGTATCAGGTTGTTAGAGCAACCTCTCTTTACTAAAGCCACCTTGTAGTCACTTTTTCTCTAATCCTCTCCACCTCCAACACTCTCTCCATCTATCCAGTTTTGCTCCGTCCGATCAGGGCGTCTAAACCAACTCAACTTGGACTAAGTCAACAAAAATACAGACTTTTCTGTCTCTTTTCTTTTCTCCGCATACCATCTCCATTCACATTTTTCCTCTCGACGGGGGCTCTTTTTCTTTTACTGTCTGCATTTCTCTCTATTTCTTTTTTGTCTTCAAAGTTTTTCTTGTTTCATTTTTTGTGTCTTCTTCTTCTTCTTCTTCTTCATTTTCGCACCTGTCTCAATTTTTGACAGTTTTCTCCGTCAACTTTTTTTTCGAAAAAAAAAACGTTTCCCGCCTCTTTTACATGTTTGACTACAGGGTTTAACCTAGTTTTCTTAGTGGTCTTCTTGTCATACCACTACTTTTTTTTTGGAAAAAATACTGTTTCAAAATTTTCATTTTTGAACATTTTACAGATTTTTTTCAATGTTGTTCTTATAACTTCTAGAAATTAATTGAAACTATTCTGAGGACAACACCAAAAAACGTTTTTTTTCATTATTTTCTAAAAAATGTTTCGGTAATAAAACCGGGTACAAAAACTCCTCAAAAATGTTTCAATACATTTTTTTGTTTACTTTCAAAAAATGAGTCAGACCTCCTCTCTAAAAAAGTAAA</canonical>
            <polymorphic>CAAGAAATCGATTTTCTCCTGATAATCAAGCCTATTTGAAATTGGCGAAAGTTCTTGTAAAAAATTTCAGAAGCTTCTTTATCGTATTATAACATCTCTTTGCATGTTAACGATCTAATAATTTTTGAAGTCAACCAAAGTGAAAATCATTTTGTGAATCAGAAAAAAATACATTTAAACAATGTCCGTAATAGGGATCCTTTAAAAAATAATTTTTATCAAATAATCGATTCTCTCAGAATAATCAGATCCAATTTGAAAACATTCAAAAACTTTTAGTATCAGGTTGTTAGAGCAACCTCTCTTTACTAAAGCCACCTTGTAGTCACTTTTTCTCTAATCCTCTCCACCTCCAACACTCTCTCCATCTATCCAGTTTTGCTCCGTCCGATCAGGGCGTCTAAACCAACTCAACTTGGACTAAGTCAACAAAAATACAGACTTTTCTGTCTCTTTTCTTTTCTCCGCATACCATCTCCATTCACATTTTTCCTCTCGAYGGGGGCTCTTTTTCTTTTACTGTCTGCATTTCTCTCTATTTCTTTTTTGTCTTCAAAGTTTTTCTTGTTTCATTTTTTGTGTCTTCTTCTTCTTCTTCTTCTTCATTTTCGCACCTGTCTCAATTTTTGACAGTTTTCTCCGTCAACTTTTTTTTCGAAAAAAAAAACGTTTCCCGCCTCTTTTACATGTTTGACTACAGGGTTTAACCTAGTTTTCTTAGTGGTCTTCTTGTCATACCACTACTTTTTTTTTGGAAAAAATACTGTTTCAAAATTTTCATTTTTGAACATTTTACAGATTTTTTTCAATGTTGTTCTTATAACTTCTAGAAATTAATTGAAACTATTCTGAGGACAACACCAAAAAACGTTTTTTTTCATTATTTTCTAAAAAATGTTTCGGTAATAAAACCGGGTACAAAAACTCCTCAAAAATGTTTCAATACATTTTTTTGTTTACTTTCAAAAAATGAGTCAGACCTCCTCTCTAAAAAAGTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTTTTCTCTAATCCTCTCCAC</pcr_primer_p1>
		<pcr_primer_p2>AAATGAAACAAGAAAAACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACTTTTTCTCTAATCCTCTCCACCTCCAACACTCTCTCCATCTATCCAGTTTTGCTCCGTCCGATCAGGGCGTCTAAACCAACTCAACTTGGACTAAGTCAACAAAAATACAGACTTTTCTGTCTCTTTTCTTTTCTCCGCATACCATCTCCATTCACATTTTTCCTCTCGACGGGGGCTCTTTTTCTTTTACTGTCTGCATTTCTCTCTATTTCTTTTTTGTCTTCAAAGTTTTTCTTGTTTCATTT</canonical_amplicon>
		<polymorphic_amplicon>ACTTTTTCTCTAATCCTCTCCACCTCCAACACTCTCTCCATCTATCCAGTTTTGCTCCGTCCGATCAGGGCGTCTAAACCAACTCAACTTGGACTAAGTCAACAAAAATACAGACTTTTCTGTCTCTTTTCTTTTCTCCGCATACCATCTCCATTCACATTTTTCCTCTCGAYGGGGGCTCTTTTTCTTTTACTGTCTGCATTTCTCTCTATTTCTTTTTTGTCTTCAAAGTTTTTCTTGTTTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37392</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>296745</contig_pos>
        <strand>+</strand>
        <context>TTTTTTTTCG[A/C]AAAAAAAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCGCACCTGTCTCAATTTTTGACAGTTTTCTCCGTCAACTTTTTTTTCG</left_flank>
        <right_flank>AAAAAAAAACGTTTCCCGCCTCTTTTACATGTTTGACTACAGGGTTTAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGAAAAAAATACATTTAAACAATGTCCGTAATAGGGATCCTTTAAAAAATAATTTTTATCAAATAATCGATTCTCTCAGAATAATCAGATCCAATTTGAAAACATTCAAAAACTTTTAGTATCAGGTTGTTAGAGCAACCTCTCTTTACTAAAGCCACCTTGTAGTCACTTTTTCTCTAATCCTCTCCACCTCCAACACTCTCTCCATCTATCCAGTTTTGCTCCGTCCGATCAGGGCGTCTAAACCAACTCAACTTGGACTAAGTCAACAAAAATACAGACTTTTCTGTCTCTTTTCTTTTCTCCGCATACCATCTCCATTCACATTTTTCCTCTCGACGGGGGCTCTTTTTCTTTTACTGTCTGCATTTCTCTCTATTTCTTTTTTGTCTTCAAAGTTTTTCTTGTTTCATTTTTTGTGTCTTCTTCTTCTTCTTCTTCTTCATTTTCGCACCTGTCTCAATTTTTGACAGTTTTCTCCGTCAACTTTTTTTTCGAAAAAAAAAACGTTTCCCGCCTCTTTTACATGTTTGACTACAGGGTTTAACCTAGTTTTCTTAGTGGTCTTCTTGTCATACCACTACTTTTTTTTTGGAAAAAATACTGTTTCAAAATTTTCATTTTTGAACATTTTACAGATTTTTTTCAATGTTGTTCTTATAACTTCTAGAAATTAATTGAAACTATTCTGAGGACAACACCAAAAAACGTTTTTTTTCATTATTTTCTAAAAAATGTTTCGGTAATAAAACCGGGTACAAAAACTCCTCAAAAATGTTTCAATACATTTTTTTGTTTACTTTCAAAAAATGAGTCAGACCTCCTCTCTAAAAAAGTAAACCTATAACCTCCATACAGTTGAAACCAATGCCACTTTTTTGTTCTGATTTGTAGCAAAGCTTTTTTTTTATTCTCAATAGGTTTAAAAAAAATTATGACCACTGTATTAGCAATCAAGAAGTTACAGCTAATTTTTTTTTCAATTCGGTGAACATGCG</canonical>
            <polymorphic>TCAGAAAAAAATACATTTAAACAATGTCCGTAATAGGGATCCTTTAAAAAATAATTTTTATCAAATAATCGATTCTCTCAGAATAATCAGATCCAATTTGAAAACATTCAAAAACTTTTAGTATCAGGTTGTTAGAGCAACCTCTCTTTACTAAAGCCACCTTGTAGTCACTTTTTCTCTAATCCTCTCCACCTCCAACACTCTCTCCATCTATCCAGTTTTGCTCCGTCCGATCAGGGCGTCTAAACCAACTCAACTTGGACTAAGTCAACAAAAATACAGACTTTTCTGTCTCTTTTCTTTTCTCCGCATACCATCTCCATTCACATTTTTCCTCTCGACGGGGGCTCTTTTTCTTTTACTGTCTGCATTTCTCTCTATTTCTTTTTTGTCTTCAAAGTTTTTCTTGTTTCATTTTTTGTGTCTTCTTCTTCTTCTTCTTCTTCATTTTCGCACCTGTCTCAATTTTTGACAGTTTTCTCCGTCAACTTTTTTTTCGMAAAAAAAAACGTTTCCCGCCTCTTTTACATGTTTGACTACAGGGTTTAACCTAGTTTTCTTAGTGGTCTTCTTGTCATACCACTACTTTTTTTTTGGAAAAAATACTGTTTCAAAATTTTCATTTTTGAACATTTTACAGATTTTTTTCAATGTTGTTCTTATAACTTCTAGAAATTAATTGAAACTATTCTGAGGACAACACCAAAAAACGTTTTTTTTCATTATTTTCTAAAAAATGTTTCGGTAATAAAACCGGGTACAAAAACTCCTCAAAAATGTTTCAATACATTTTTTTGTTTACTTTCAAAAAATGAGTCAGACCTCCTCTCTAAAAAAGTAAACCTATAACCTCCATACAGTTGAAACCAATGCCACTTTTTTGTTCTGATTTGTAGCAAAGCTTTTTTTTTATTCTCAATAGGTTTAAAAAAAATTATGACCACTGTATTAGCAATCAAGAAGTTACAGCTAATTTTTTTTTCAATTCGGTGAACATGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 269 159 70</canonical_bands>
                <polymorphic_bands>661 269 70</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCAAAGTTTTTCTTGTTTCAT</pcr_primer_p1>
		<pcr_primer_p2>AAATCTGTAAAATGTTCAAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTTCAAAGTTTTTCTTGTTTCATTTTTTGTGTCTTCTTCTTCTTCTTCTTCTTCATTTTCGCACCTGTCTCAATTTTTGACAGTTTTCTCCGTCAACTTTTTTTTCGAAAAAAAAAACGTTTCCCGCCTCTTTTACATGTTTGACTACAGGGTTTAACCTAGTTTTCTTAGTGGTCTTCTTGTCATACCACTACTTTTTTTTTGGAAAAAATACTGTTTCAAAATTTTCATTTTTGAACATTTTACAGATTT</canonical_amplicon>
		<polymorphic_amplicon>CTTCAAAGTTTTTCTTGTTTCATTTTTTGTGTCTTCTTCTTCTTCTTCTTCTTCATTTTCGCACCTGTCTCAATTTTTGACAGTTTTCTCCGTCAACTTTTTTTTCGMAAAAAAAAACGTTTCCCGCCTCTTTTACATGTTTGACTACAGGGTTTAACCTAGTTTTCTTAGTGGTCTTCTTGTCATACCACTACTTTTTTTTTGGAAAAAATACTGTTTCAAAATTTTCATTTTTGAACATTTTACAGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37393</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>370307</contig_pos>
        <strand>+</strand>
        <context>AATWAAATAT[A/C]ATTGTGAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATAT</left_flank>
        <right_flank>ATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTATGTAACTTTTTTCTTTTTTAATTCAAAAAAATGTCCCAATTTTTCAGTGGAAATTTTTTTTACTGAGAAGGGGCGGAAAATTGTCGCTTCGGCCCATCGGCCCGGCCCGGCCCGTTGCAAGTATTGAAAAAAAGAATGTAAGGTTGAAATGAATTTCAAACAAAACTCAAAAACAACATCTTTCATCGAGACATATTCTACAAAAACACATTTGTGGTTTGGGAGTCCGAAAAGTTCGATGAAGGGTCCATGACTTCCAGAAAACGATAAGGTTTTTTTTTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTAACAGGCGTGGAGTAAAATATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACTGACAGAAAACAGAGAGACGCAACTTAATTTATCTTCCTTATGTATAAAACGCTACGCGCATCTGTTGGTCCCCCTGTCATTCTGTGGACTTTTGAAAAACTTAAAAAATAAATATAGATTAAC</canonical>
            <polymorphic>AGTATGTAACTTTTTTCTTTTTTAATTCAAAAAAATGTCCCAATTTTTCAGTGGAAATTTTTTTTACTGAGAAGGGGCGGAAAATTGTCGCTTCGGCCCATCGGCCCGGCCCGGCCCGTTGCAAGTATTGAAAAAAAGAATGTAAGGTTGAAATGAATTTCAAACAAAACTCAAAAACAACATCTTTCATCGAGACATATTCTACAAAAACACATTTGTGGTTTGGGAGTCCGAAAAGTTCGATGAAGGGTCCATGACTTCCAGAAAACGATAAGGTTTTTTTTTGTAAAACAAACAGACACACTTTGCTCTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATMATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTAACAGGCGTGGAGTAAAATATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACTGACAGAAAACAGAGAGACGCAACTTAATTTATCTTCCTTATGTATAAAACGCTACGCGCATCTGTTGGTCCCCCTGTCATTCTGTGGACTTTTGAAAAACTTAAAAAATAAATATAGATTAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>160 142 98 97 73 66 59 48 44 41 27 26 23 21 18 18 15 14 10</canonical_bands>
                <polymorphic_bands>160 142 98 97 73 66 59 48 44 41 31 27 26 23 18 18 15 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTCTGATTGTAAGTTGTGTGTG</pcr_primer_p1>
		<pcr_primer_p2>TACAGGAAAATTGACAAATGACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTA</canonical_amplicon>
		<polymorphic_amplicon>CTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATMATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37394</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>370617</contig_pos>
        <strand></strand>
        <context>cttcgcgact[A/C]actctttttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACT</left_flank>
        <right_flank>ACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTAACAGGCGTGGAGTAAAATATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACTGACAGAAAACAGAGAGACGCAACTTAATTTATCTTCCTTATGTATAAAACGCTACGCGCATCTGTTGGTCCCCCTGTCATTCTGTGGACTTTTGAAAAACTTAAAAAATAAATATAGATTAACGTGACCCCTTACGAAAAACTGAGGTGCAAAGCGACGAACCAAGCGACGAACCAAAAAAAAAGATTGATCGAGAATTTTCTGTTTTGGGTAGAATTTTCAGTTTAAATGAATACAATGCCCATCGGAACTTAAGCTTATAAATCGGAGTTGAAAAAACATTAATTTGAGCGATACTCTAGATTTTGTTCAAAATTCAGTTGTATAAAAGTTTTATTTGAACATTCTTATTGGTTCTGACAAGAATTGAAACAAAGTTTGATAAAAAAAAATCAATTGAAGTTTAAAACACTGGTCGATAACTTAACAATAA</canonical>
            <polymorphic>CTTTAAATTCTACAAAAAGTAAGAATTAGCGCGTTTCGAAGTTTGCATTCAGAGATGTGAAATCGTAATGGAAGCTCTCTAGAATTACTTCTGATTGTAAGTTGTGTGTGGTAAAACTAAAAAAAACATGATGCAAGAACAACATTATAATACTTTTCTGAATCAGTGATATTTTTGAAAATTAAATATAATTGTGAAGAGCAATCTTAAAATTCCTTTCAGGAAACTGCAATCTCTAATCTTAATCTTAATCTTAAAAATCTTAATAATATTAATAATTAATAATCTTACAAACAACATTTTCCATTGAATGAGTCATTTGTCAATTTTCCTGTAACAGGCGTGGAGTAAAATATTGTTCTTTGTGTAATTTATTTGAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTMACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACTGACAGAAAACAGAGAGACGCAACTTAATTTATCTTCCTTATGTATAAAACGCTACGCGCATCTGTTGGTCCCCCTGTCATTCTGTGGACTTTTGAAAAACTTAAAAAATAAATATAGATTAACGTGACCCCTTACGAAAAACTGAGGTGCAAAGCGACGAACCAAGCGACGAACCAAAAAAAAAGATTGATCGAGAATTTTCTGTTTTGGGTAGAATTTTCAGTTTAAATGAATACAATGCCCATCGGAACTTAAGCTTATAAATCGGAGTTGAAAAAACATTAATTTGAGCGATACTCTAGATTTTGTTCAAAATTCAGTTGTATAAAAGTTTTATTTGAACATTCTTATTGGTTCTGACAAGAATTGAAACAAAGTTTGATAAAAAAAAATCAATTGAAGTTTAAAACACTGGTCGATAACTTAACAATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATGCAATTCGAAACAGTAATA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCTACCCAAAACAGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>409</pcr_amplicon_size>
		<canonical_amplicon>GAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTAACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACTGACAGAAAACAGAGAGACGCAACTTAATTTATCTTCCTTATGTATAAAACGCTACGCGCATCTGTTGGTCCCCCTGTCATTCTGTGGACTTTTGAAAAACTTAAAAAATAAATATAGATTAACGTGACCCCTTACGAAAAACTGAGGTGCAAAGCGACGAACCAAGCGACGAACCAAAAAAAAAGATTGATCGAGAATTTTCTGTTTTGGGTAGAATTT</canonical_amplicon>
		<polymorphic_amplicon>GAATGCAATTCGAAACAGTAATATTTTCAAAAAATTTATTATACCAGCCTGTTTGCAGCGCCTCCGGCGCTTCAAACAGCTGGGAAAAACCTTTTTCTTTCACTGTTTGTCGCTTCGCGACTMACTCTTTTTTAAAGGTCACGTAAATCTATATTTCATTTTCCAGCTTTTCAAAATTTGCGGACAAACTGACAGAAAACAGAGAGACGCAACTTAATTTATCTTCCTTATGTATAAAACGCTACGCGCATCTGTTGGTCCCCCTGTCATTCTGTGGACTTTTGAAAAACTTAAAAAATAAATATAGATTAACGTGACCCCTTACGAAAAACTGAGGTGCAAAGCGACGAACCAAGCGACGAACCAAAAAAAAAGATTGATCGAGAATTTTCTGTTTTGGGTAGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37395</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>374606</contig_pos>
        <strand>+</strand>
        <context>ATTGAAATTT[A/T]TTGATTTTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGAAACACTGTTTTTTTTTGCTGGAAACTTCTCGATTATATTGAAATTT</left_flank>
        <right_flank>TTGATTTTTATAAATTTTAAACCAAAGTTGCAAAAGGCTGGTAGACGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATAGATAACTTTTGAAACATTTTTATACAAAAAAATTTTGGTCGGATTCCCCCTTTCAATGATAAAACGAACGATGTATTTTGAGGAAAATATTGCTGATAACATCACAATGGATTAGGGAAGCCCGGGTTTAAATGTCGGAACTTTAATATCAGTTCTTGAAAATTATCGGTTAGAAATCTGATTTTTAAGCAACTTTTGAATACAATTAGTTCATGATTATTATAGCTAAACATATCACTTTAAAATTAAGAGTCGGAAGAACAGGATATACCGTAAAACCTGTATTAGAAGGGTCTTCTAATTGACGGGCTCCTCTAATGTTGTGCAAAAAAGGGCTTGGAAAATAGAAGAGCCCTCTTCAAAATGTGCTGTTTGAAGTTAAACATTTCCGTACATTTTCAGTGAAAAACATTCCGGAAATACCACAATTTCACAGTTATTTGTTGAAACACTGTTTTTTTTTGCTGGAAACTTCTCGATTATATTGAAATTTGTTGATTTTTATAAATTTTAAACCAAAGTTGCAAAAGGCTGGTAGACGAATTTTCTCGGCCCGGCCCGCCTACCACAGTGGAAAATTTTCCAATGAAAAATTGGGTAATTTTTTTTGAGTTAAAAAGAAAAAAGGGTACATTATTAACCAAAATTACAAAGTAGAAAGTAGTCAAAAAATCGGTCGCTTTTGTTTAAATTTTTGAAAAAAATTTCAAAAATTTCGAAAAAAAAAAATTCAAAAAAATCAACGTCTGTAAGTACCCCGGCCCGGCTTGCCGAAATTCTCGACGGGCCGACCCGCGGGCCGGCCCGAGATTTTGCAAGTATGTTTTAAACGAAAATATTTCGGAAAATAGCTTGTAAATAGGAGAGCCCCTGTAAAGGAAGGACCTCCGTAATAGAAGGGCCCCCGGAGGTACCTTAGAACAATAGAAGGGCCGACCTTTCTAATACAGGTTTTGCGATAGTTAATAATTCAACAAAAATACCGGAATTTCAG</canonical>
            <polymorphic>AAAATAGATAACTTTTGAAACATTTTTATACAAAAAAATTTTGGTCGGATTCCCCCTTTCAATGATAAAACGAACGATGTATTTTGAGGAAAATATTGCTGATAACATCACAATGGATTAGGGAAGCCCGGGTTTAAATGTCGGAACTTTAATATCAGTTCTTGAAAATTATCGGTTAGAAATCTGATTTTTAAGCAACTTTTGAATACAATTAGTTCATGATTATTATAGCTAAACATATCACTTTAAAATTAAGAGTCGGAAGAACAGGATATACCGTAAAACCTGTATTAGAAGGGTCTTCTAATTGACGGGCTCCTCTAATGTTGTGCAAAAAAGGGCTTGGAAAATAGAAGAGCCCTCTTCAAAATGTGCTGTTTGAAGTTAAACATTTCCGTACATTTTCAGTGAAAAACATTCCGGAAATACCACAATTTCACAGTTATTTGTTGAAACACTGTTTTTTTTTGCTGGAAACTTCTCGATTATATTGAAATTTWTTGATTTTTATAAATTTTAAACCAAAGTTGCAAAAGGCTGGTAGACGAATTTTCTCGGCCCGGCCCGCCTACCACAGTGGAAAATTTTCCAATGAAAAATTGGGTAATTTTTTTTGAGTTAAAAAGAAAAAAGGGTACATTATTAACCAAAATTACAAAGTAGAAAGTAGTCAAAAAATCGGTCGCTTTTGTTTAAATTTTTGAAAAAAATTTCAAAAATTTCGAAAAAAAAAAATTCAAAAAAATCAACGTCTGTAAGTACCCCGGCCCGGCTTGCCGAAATTCTCGACGGGCCGACCCGCGGGCCGGCCCGAGATTTTGCAAGTATGTTTTAAACGAAAATATTTCGGAAAATAGCTTGTAAATAGGAGAGCCCCTGTAAAGGAAGGACCTCCGTAATAGAAGGGCCCCCGGAGGTACCTTAGAACAATAGAAGGGCCGACCTTTCTAATACAGGTTTTGCGATAGTTAATAATTCAACAAAAATACCGGAATTTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTCTTCAAAATGTGCTGTT</pcr_primer_p1>
		<pcr_primer_p2>GGCTCTCCTATTTACAAGCTATT</pcr_primer_p2>
		<pcr_amplicon_size>516</pcr_amplicon_size>
		<canonical_amplicon>CCTCTTCAAAATGTGCTGTTTGAAGTTAAACATTTCCGTACATTTTCAGTGAAAAACATTCCGGAAATACCACAATTTCACAGTTATTTGTTGAAACACTGTTTTTTTTTGCTGGAAACTTCTCGATTATATTGAAATTTGTTGATTTTTATAAATTTTAAACCAAAGTTGCAAAAGGCTGGTAGACGAATTTTCTCGGCCCGGCCCGCCTACCACAGTGGAAAATTTTCCAATGAAAAATTGGGTAATTTTTTTTGAGTTAAAAAGAAAAAAGGGTACATTATTAACCAAAATTACAAAGTAGAAAGTAGTCAAAAAATCGGTCGCTTTTGTTTAAATTTTTGAAAAAAATTTCAAAAATTTCGAAAAAAAAAAATTCAAAAAAATCAACGTCTGTAAGTACCCCGGCCCGGCTTGCCGAAATTCTCGACGGGCCGACCCGCGGGCCGGCCCGAGATTTTGCAAGTATGTTTTAAACGAAAATATTTCGGAAAATAGCTTGTAAATAGGAGAGCC</canonical_amplicon>
		<polymorphic_amplicon>CCTCTTCAAAATGTGCTGTTTGAAGTTAAACATTTCCGTACATTTTCAGTGAAAAACATTCCGGAAATACCACAATTTCACAGTTATTTGTTGAAACACTGTTTTTTTTTGCTGGAAACTTCTCGATTATATTGAAATTTWTTGATTTTTATAAATTTTAAACCAAAGTTGCAAAAGGCTGGTAGACGAATTTTCTCGGCCCGGCCCGCCTACCACAGTGGAAAATTTTCCAATGAAAAATTGGGTAATTTTTTTTGAGTTAAAAAGAAAAAAGGGTACATTATTAACCAAAATTACAAAGTAGAAAGTAGTCAAAAAATCGGTCGCTTTTGTTTAAATTTTTGAAAAAAATTTCAAAAATTTCGAAAAAAAAAAATTCAAAAAAATCAACGTCTGTAAGTACCCCGGCCCGGCTTGCCGAAATTCTCGACGGGCCGACCCGCGGGCCGGCCCGAGATTTTGCAAGTATGTTTTAAACGAAAATATTTCGGAAAATAGCTTGTAAATAGGAGAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37396</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>375004</contig_pos>
        <strand>+</strand>
        <context>GGACCTCCGT[A/T]ATAGAAGGGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGGAAAATAGCTTGTAAATAGGAGAGCCCCTGTAAAGGAAGGACCTCCGT</left_flank>
        <right_flank>ATAGAAGGGCCCCCGGAGGTACCTTAGAACAATAGAAGGGCCGACCTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATTTTCAGTGAAAAACATTCCGGAAATACCACAATTTCACAGTTATTTGTTGAAACACTGTTTTTTTTTGCTGGAAACTTCTCGATTATATTGAAATTTGTTGATTTTTATAAATTTTAAACCAAAGTTGCAAAAGGCTGGTAGACGAATTTTCTCGGCCCGGCCCGCCTACCACAGTGGAAAATTTTCCAATGAAAAATTGGGTAATTTTTTTTGAGTTAAAAAGAAAAAAGGGTACATTATTAACCAAAATTACAAAGTAGAAAGTAGTCAAAAAATCGGTCGCTTTTGTTTAAATTTTTGAAAAAAATTTCAAAAATTTCGAAAAAAAAAAATTCAAAAAAATCAACGTCTGTAAGTACCCCGGCCCGGCTTGCCGAAATTCTCGACGGGCCGACCCGCGGGCCGGCCCGAGATTTTGCAAGTATGTTTTAAACGAAAATATTTCGGAAAATAGCTTGTAAATAGGAGAGCCCCTGTAAAGGAAGGACCTCCGTAATAGAAGGGCCCCCGGAGGTACCTTAGAACAATAGAAGGGCCGACCTTTCTAATACAGGTTTTGCGATAGTTAATAATTCAACAAAAATACCGGAATTTCAGATTATAGTAGAAATGTCTAAGAATTACTGGCAAAAAGTTTAAAAGTGGACTTCTGTTTTCTAAAAAAAAGTTTCTCTTTTATCATTTACTAGAAGGAACTTGATGAAACGATGTTTAGTATCCTCTTCGACAGATTTTCTGTTACACTCTTTTCAAAAATCGTTCAATCGAAATTTTCATCTAGTGCTCCAGCGAAGAACATATTGGGAAAAATGGTTATTGAAAACTGGAATTTCCAATTTTTTTTTTGGAATTCTTCCTACAATTTCTTTCTATAGTATTACACTATTAGCTCCCTTGATTTGTATTCAAATTTGTTTTTGGCGATTCCAATTTGCTTTTCCGAAACACTTCAAAACTATACATTAATATTATTTTCTCCACCTCATATCCTGTCT</canonical>
            <polymorphic>ACATTTTCAGTGAAAAACATTCCGGAAATACCACAATTTCACAGTTATTTGTTGAAACACTGTTTTTTTTTGCTGGAAACTTCTCGATTATATTGAAATTTGTTGATTTTTATAAATTTTAAACCAAAGTTGCAAAAGGCTGGTAGACGAATTTTCTCGGCCCGGCCCGCCTACCACAGTGGAAAATTTTCCAATGAAAAATTGGGTAATTTTTTTTGAGTTAAAAAGAAAAAAGGGTACATTATTAACCAAAATTACAAAGTAGAAAGTAGTCAAAAAATCGGTCGCTTTTGTTTAAATTTTTGAAAAAAATTTCAAAAATTTCGAAAAAAAAAAATTCAAAAAAATCAACGTCTGTAAGTACCCCGGCCCGGCTTGCCGAAATTCTCGACGGGCCGACCCGCGGGCCGGCCCGAGATTTTGCAAGTATGTTTTAAACGAAAATATTTCGGAAAATAGCTTGTAAATAGGAGAGCCCCTGTAAAGGAAGGACCTCCGTWATAGAAGGGCCCCCGGAGGTACCTTAGAACAATAGAAGGGCCGACCTTTCTAATACAGGTTTTGCGATAGTTAATAATTCAACAAAAATACCGGAATTTCAGATTATAGTAGAAATGTCTAAGAATTACTGGCAAAAAGTTTAAAAGTGGACTTCTGTTTTCTAAAAAAAAGTTTCTCTTTTATCATTTACTAGAAGGAACTTGATGAAACGATGTTTAGTATCCTCTTCGACAGATTTTCTGTTACACTCTTTTCAAAAATCGTTCAATCGAAATTTTCATCTAGTGCTCCAGCGAAGAACATATTGGGAAAAATGGTTATTGAAAACTGGAATTTCCAATTTTTTTTTTGGAATTCTTCCTACAATTTCTTTCTATAGTATTACACTATTAGCTCCCTTGATTTGTATTCAAATTTGTTTTTGGCGATTCCAATTTGCTTTTCCGAAACACTTCAAAACTATACATTAATATTATTTTCTCCACCTCATATCCTGTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGGAAAATAGCTTGTAAATAG</pcr_primer_p1>
		<pcr_primer_p2>CAAGTTCCTTCTAGTAAATGATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TTCGGAAAATAGCTTGTAAATAGGAGAGCCCCTGTAAAGGAAGGACCTCCGTAATAGAAGGGCCCCCGGAGGTACCTTAGAACAATAGAAGGGCCGACCTTTCTAATACAGGTTTTGCGATAGTTAATAATTCAACAAAAATACCGGAATTTCAGATTATAGTAGAAATGTCTAAGAATTACTGGCAAAAAGTTTAAAAGTGGACTTCTGTTTTCTAAAAAAAAGTTTCTCTTTTATCATTTACTAGAAGGAACTTG</canonical_amplicon>
		<polymorphic_amplicon>TTCGGAAAATAGCTTGTAAATAGGAGAGCCCCTGTAAAGGAAGGACCTCCGTWATAGAAGGGCCCCCGGAGGTACCTTAGAACAATAGAAGGGCCGACCTTTCTAATACAGGTTTTGCGATAGTTAATAATTCAACAAAAATACCGGAATTTCAGATTATAGTAGAAATGTCTAAGAATTACTGGCAAAAAGTTTAAAAGTGGACTTCTGTTTTCTAAAAAAAAGTTTCTCTTTTATCATTTACTAGAAGGAACTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37397</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>375068</contig_pos>
        <strand>+</strand>
        <context>TACAGGTTTT[A/G]CGATAGTTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGAGGTACCTTAGAACAATAGAAGGGCCGACCTTTCTAATACAGGTTTT</left_flank>
        <right_flank>CGATAGTTAATAATTCAACAAAAATACCGGAATTTCAGATTATAGTAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTGCTGGAAACTTCTCGATTATATTGAAATTTGTTGATTTTTATAAATTTTAAACCAAAGTTGCAAAAGGCTGGTAGACGAATTTTCTCGGCCCGGCCCGCCTACCACAGTGGAAAATTTTCCAATGAAAAATTGGGTAATTTTTTTTGAGTTAAAAAGAAAAAAGGGTACATTATTAACCAAAATTACAAAGTAGAAAGTAGTCAAAAAATCGGTCGCTTTTGTTTAAATTTTTGAAAAAAATTTCAAAAATTTCGAAAAAAAAAAATTCAAAAAAATCAACGTCTGTAAGTACCCCGGCCCGGCTTGCCGAAATTCTCGACGGGCCGACCCGCGGGCCGGCCCGAGATTTTGCAAGTATGTTTTAAACGAAAATATTTCGGAAAATAGCTTGTAAATAGGAGAGCCCCTGTAAAGGAAGGACCTCCGTAATAGAAGGGCCCCCGGAGGTACCTTAGAACAATAGAAGGGCCGACCTTTCTAATACAGGTTTTGCGATAGTTAATAATTCAACAAAAATACCGGAATTTCAGATTATAGTAGAAATGTCTAAGAATTACTGGCAAAAAGTTTAAAAGTGGACTTCTGTTTTCTAAAAAAAAGTTTCTCTTTTATCATTTACTAGAAGGAACTTGATGAAACGATGTTTAGTATCCTCTTCGACAGATTTTCTGTTACACTCTTTTCAAAAATCGTTCAATCGAAATTTTCATCTAGTGCTCCAGCGAAGAACATATTGGGAAAAATGGTTATTGAAAACTGGAATTTCCAATTTTTTTTTTGGAATTCTTCCTACAATTTCTTTCTATAGTATTACACTATTAGCTCCCTTGATTTGTATTCAAATTTGTTTTTGGCGATTCCAATTTGCTTTTCCGAAACACTTCAAAACTATACATTAATATTATTTTCTCCACCTCATATCCTGTCTCATCCTCCTCTTCATTTATTTCTATTATTTATTCACACCTTTCCGTCACAATGCGCCAAAAACC</canonical>
            <polymorphic>TTTTTTTGCTGGAAACTTCTCGATTATATTGAAATTTGTTGATTTTTATAAATTTTAAACCAAAGTTGCAAAAGGCTGGTAGACGAATTTTCTCGGCCCGGCCCGCCTACCACAGTGGAAAATTTTCCAATGAAAAATTGGGTAATTTTTTTTGAGTTAAAAAGAAAAAAGGGTACATTATTAACCAAAATTACAAAGTAGAAAGTAGTCAAAAAATCGGTCGCTTTTGTTTAAATTTTTGAAAAAAATTTCAAAAATTTCGAAAAAAAAAAATTCAAAAAAATCAACGTCTGTAAGTACCCCGGCCCGGCTTGCCGAAATTCTCGACGGGCCGACCCGCGGGCCGGCCCGAGATTTTGCAAGTATGTTTTAAACGAAAATATTTCGGAAAATAGCTTGTAAATAGGAGAGCCCCTGTAAAGGAAGGACCTCCGTAATAGAAGGGCCCCCGGAGGTACCTTAGAACAATAGAAGGGCCGACCTTTCTAATACAGGTTTTRCGATAGTTAATAATTCAACAAAAATACCGGAATTTCAGATTATAGTAGAAATGTCTAAGAATTACTGGCAAAAAGTTTAAAAGTGGACTTCTGTTTTCTAAAAAAAAGTTTCTCTTTTATCATTTACTAGAAGGAACTTGATGAAACGATGTTTAGTATCCTCTTCGACAGATTTTCTGTTACACTCTTTTCAAAAATCGTTCAATCGAAATTTTCATCTAGTGCTCCAGCGAAGAACATATTGGGAAAAATGGTTATTGAAAACTGGAATTTCCAATTTTTTTTTTGGAATTCTTCCTACAATTTCTTTCTATAGTATTACACTATTAGCTCCCTTGATTTGTATTCAAATTTGTTTTTGGCGATTCCAATTTGCTTTTCCGAAACACTTCAAAACTATACATTAATATTATTTTCTCCACCTCATATCCTGTCTCATCCTCCTCTTCATTTATTTCTATTATTTATTCACACCTTTCCGTCACAATGCGCCAAAAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAAATAGGAGAGCCCCTGTA</pcr_primer_p1>
		<pcr_primer_p2>GTTTCATCAAGTTCCTTCTAGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTAAATAGGAGAGCCCCTGTAAAGGAAGGACCTCCGTAATAGAAGGGCCCCCGGAGGTACCTTAGAACAATAGAAGGGCCGACCTTTCTAATACAGGTTTTGCGATAGTTAATAATTCAACAAAAATACCGGAATTTCAGATTATAGTAGAAATGTCTAAGAATTACTGGCAAAAAGTTTAAAAGTGGACTTCTGTTTTCTAAAAAAAAGTTTCTCTTTTATCATTTACTAGAAGGAACTTGATGAAAC</canonical_amplicon>
		<polymorphic_amplicon>GTAAATAGGAGAGCCCCTGTAAAGGAAGGACCTCCGTAATAGAAGGGCCCCCGGAGGTACCTTAGAACAATAGAAGGGCCGACCTTTCTAATACAGGTTTTRCGATAGTTAATAATTCAACAAAAATACCGGAATTTCAGATTATAGTAGAAATGTCTAAGAATTACTGGCAAAAAGTTTAAAAGTGGACTTCTGTTTTCTAAAAAAAAGTTTCTCTTTTATCATTTACTAGAAGGAACTTGATGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37398</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>375124</contig_pos>
        <strand>+</strand>
        <context>TAGAAATGTC[C/T]AAGAATTACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTAATAATTCAACAAAAATACCGGAATTTCAGATTATAGTAGAAATGTC</left_flank>
        <right_flank>AAGAATTACTGGCAAAAAGTTTAAAAGTGGACTTCTGTTTTCTAAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACCAAAGTTGCAAAAGGCTGGTAGACGAATTTTCTCGGCCCGGCCCGCCTACCACAGTGGAAAATTTTCCAATGAAAAATTGGGTAATTTTTTTTGAGTTAAAAAGAAAAAAGGGTACATTATTAACCAAAATTACAAAGTAGAAAGTAGTCAAAAAATCGGTCGCTTTTGTTTAAATTTTTGAAAAAAATTTCAAAAATTTCGAAAAAAAAAAATTCAAAAAAATCAACGTCTGTAAGTACCCCGGCCCGGCTTGCCGAAATTCTCGACGGGCCGACCCGCGGGCCGGCCCGAGATTTTGCAAGTATGTTTTAAACGAAAATATTTCGGAAAATAGCTTGTAAATAGGAGAGCCCCTGTAAAGGAAGGACCTCCGTAATAGAAGGGCCCCCGGAGGTACCTTAGAACAATAGAAGGGCCGACCTTTCTAATACAGGTTTTGCGATAGTTAATAATTCAACAAAAATACCGGAATTTCAGATTATAGTAGAAATGTCTAAGAATTACTGGCAAAAAGTTTAAAAGTGGACTTCTGTTTTCTAAAAAAAAGTTTCTCTTTTATCATTTACTAGAAGGAACTTGATGAAACGATGTTTAGTATCCTCTTCGACAGATTTTCTGTTACACTCTTTTCAAAAATCGTTCAATCGAAATTTTCATCTAGTGCTCCAGCGAAGAACATATTGGGAAAAATGGTTATTGAAAACTGGAATTTCCAATTTTTTTTTTGGAATTCTTCCTACAATTTCTTTCTATAGTATTACACTATTAGCTCCCTTGATTTGTATTCAAATTTGTTTTTGGCGATTCCAATTTGCTTTTCCGAAACACTTCAAAACTATACATTAATATTATTTTCTCCACCTCATATCCTGTCTCATCCTCCTCTTCATTTATTTCTATTATTTATTCACACCTTTCCGTCACAATGCGCCAAAAACCTCTGGTGGGCGTGTCCATCGAATAGTCAGCAATGCAAAGGTGGGCGGGGCTTCTTC</canonical>
            <polymorphic>AAACCAAAGTTGCAAAAGGCTGGTAGACGAATTTTCTCGGCCCGGCCCGCCTACCACAGTGGAAAATTTTCCAATGAAAAATTGGGTAATTTTTTTTGAGTTAAAAAGAAAAAAGGGTACATTATTAACCAAAATTACAAAGTAGAAAGTAGTCAAAAAATCGGTCGCTTTTGTTTAAATTTTTGAAAAAAATTTCAAAAATTTCGAAAAAAAAAAATTCAAAAAAATCAACGTCTGTAAGTACCCCGGCCCGGCTTGCCGAAATTCTCGACGGGCCGACCCGCGGGCCGGCCCGAGATTTTGCAAGTATGTTTTAAACGAAAATATTTCGGAAAATAGCTTGTAAATAGGAGAGCCCCTGTAAAGGAAGGACCTCCGTAATAGAAGGGCCCCCGGAGGTACCTTAGAACAATAGAAGGGCCGACCTTTCTAATACAGGTTTTGCGATAGTTAATAATTCAACAAAAATACCGGAATTTCAGATTATAGTAGAAATGTCYAAGAATTACTGGCAAAAAGTTTAAAAGTGGACTTCTGTTTTCTAAAAAAAAGTTTCTCTTTTATCATTTACTAGAAGGAACTTGATGAAACGATGTTTAGTATCCTCTTCGACAGATTTTCTGTTACACTCTTTTCAAAAATCGTTCAATCGAAATTTTCATCTAGTGCTCCAGCGAAGAACATATTGGGAAAAATGGTTATTGAAAACTGGAATTTCCAATTTTTTTTTTGGAATTCTTCCTACAATTTCTTTCTATAGTATTACACTATTAGCTCCCTTGATTTGTATTCAAATTTGTTTTTGGCGATTCCAATTTGCTTTTCCGAAACACTTCAAAACTATACATTAATATTATTTTCTCCACCTCATATCCTGTCTCATCCTCCTCTTCATTTATTTCTATTATTTATTCACACCTTTCCGTCACAATGCGCCAAAAACCTCTGGTGGGCGTGTCCATCGAATAGTCAGCAATGCAAAGGTGGGCGGGGCTTCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 403 96</canonical_bands>
                <polymorphic_bands>597 403</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAGGTACCTTAGAACAATAGAAG</pcr_primer_p1>
		<pcr_primer_p2>AACGATTTTTGAAAAGAGTGTAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GGAGGTACCTTAGAACAATAGAAGGGCCGACCTTTCTAATACAGGTTTTGCGATAGTTAATAATTCAACAAAAATACCGGAATTTCAGATTATAGTAGAAATGTCTAAGAATTACTGGCAAAAAGTTTAAAAGTGGACTTCTGTTTTCTAAAAAAAAGTTTCTCTTTTATCATTTACTAGAAGGAACTTGATGAAACGATGTTTAGTATCCTCTTCGACAGATTTTCTGTTACACTCTTTTCAAAAATCGTT</canonical_amplicon>
		<polymorphic_amplicon>GGAGGTACCTTAGAACAATAGAAGGGCCGACCTTTCTAATACAGGTTTTGCGATAGTTAATAATTCAACAAAAATACCGGAATTTCAGATTATAGTAGAAATGTCYAAGAATTACTGGCAAAAAGTTTAAAAGTGGACTTCTGTTTTCTAAAAAAAAGTTTCTCTTTTATCATTTACTAGAAGGAACTTGATGAAACGATGTTTAGTATCCTCTTCGACAGATTTTCTGTTACACTCTTTTCAAAAATCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37399</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>388881</contig_pos>
        <strand>+</strand>
        <context>CTCCTCGTGG[A/T]GATGATTCGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAACTCTCTAGTCGCGTACTGGTTTTCCTCGACACTGAGCTCCTCGTGG</left_flank>
        <right_flank>GATGATTCGTATTTCGAGAACAGACTTTCATGCAAATCGCGCAACAGTAG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTTGCCGGGTTGAAACTTTTTTCTGTTTCACAGGATGTGTATATTTTTATTCTCTTTTTGTGCTTGTTTATCAGATACAAACAACACAAATTTGCAAGACGCTTTTCCGATGGCCCAATGCTTTCAGAGGAGCTGTTGAATCTTAACAGTCCTGTTGCGACGAGTAGATCATCCGGAGCACCATCATCCTCCGCCAAGACTTCATCACAATCGATATCTTGGAGCAATCGTAACAATACCGTTTCTCGAGACTGAACATACCGTTTCTCGAGACCTCCTTACCAGCTTTCACGTTTTCCGCCGATTGTTCAGTCAATAAACGAGAAGCAACTTCTTGTCGATTCATCTCACTTTGACACGCGGATCTCACAAGTTCCAGTCTTCTCGATAACGTTATTTTCGGATTGAACAGTTCGTGCACTTTGGACGGTGTACGGAGTGGGCGTCGGAACTCTCTAGTCGCGTACTGGTTTTCCTCGACACTGAGCTCCTCGTGGAGATGATTCGTATTTCGAGAACAGACTTTCATGCAAATCGCGCAACAGTAGGATCGTGGTCCCGCGTTCGAATTTCCGGTAACATCTTTGATTTGTTCCGAAGAGAGACTGATGTGCAATCCTGAAATGAATGAATAAAATATATATTGAAAGCAGAATCTTCTCTATATCTAGTTCATTTTTATTTGACAGAACGTACGTAGGTTATTATTAGATTCATCAGCTTCTGCTAAATTCTCTACTCCTTCGAGGGGGACGCCGTCAGTGACATAAGTTGTGGTGTCTTCTTCTTCTTCTTCTTCAAACATTTTACGACGGCTACAAATGTTGGGGACTGTTAAAAGGTTATTTTATGCACTTAAAAACTTTCACAGGATGTGTAATTTTTGATTCAATAATCAAGTGATGAATGCCATGTTTCTGCTGCCTTAAAGGTGGGGAGACATGAAAAAATAATGTTCTCGAAATTCCGTGTAAATATGCCCCTCGAGGAGTTGAACT</canonical>
            <polymorphic>ACCTTGCCGGGTTGAAACTTTTTTCTGTTTCACAGGATGTGTATATTTTTATTCTCTTTTTGTGCTTGTTTATCAGATACAAACAACACAAATTTGCAAGACGCTTTTCCGATGGCCCAATGCTTTCAGAGGAGCTGTTGAATCTTAACAGTCCTGTTGCGACGAGTAGATCATCCGGAGCACCATCATCCTCCGCCAAGACTTCATCACAATCGATATCTTGGAGCAATCGTAACAATACCGTTTCTCGAGACTGAACATACCGTTTCTCGAGACCTCCTTACCAGCTTTCACGTTTTCCGCCGATTGTTCAGTCAATAAACGAGAAGCAACTTCTTGTCGATTCATCTCACTTTGACACGCGGATCTCACAAGTTCCAGTCTTCTCGATAACGTTATTTTCGGATTGAACAGTTCGTGCACTTTGGACGGTGTACGGAGTGGGCGTCGGAACTCTCTAGTCGCGTACTGGTTTTCCTCGACACTGAGCTCCTCGTGGWGATGATTCGTATTTCGAGAACAGACTTTCATGCAAATCGCGCAACAGTAGGATCGTGGTCCCGCGTTCGAATTTCCGGTAACATCTTTGATTTGTTCCGAAGAGAGACTGATGTGCAATCCTGAAATGAATGAATAAAATATATATTGAAAGCAGAATCTTCTCTATATCTAGTTCATTTTTATTTGACAGAACGTACGTAGGTTATTATTAGATTCATCAGCTTCTGCTAAATTCTCTACTCCTTCGAGGGGGACGCCGTCAGTGACATAAGTTGTGGTGTCTTCTTCTTCTTCTTCTTCAAACATTTTACGACGGCTACAAATGTTGGGGACTGTTAAAAGGTTATTTTATGCACTTAAAAACTTTCACAGGATGTGTAATTTTTGATTCAATAATCAAGTGATGAATGCCATGTTTCTGCTGCCTTAAAGGTGGGGAGACATGAAAAAATAATGTTCTCGAAATTCCGTGTAAATATGCCCCTCGAGGAGTTGAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACGTTATTTTCGGATTGAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTATTCATTCATTTCAGGATTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TAACGTTATTTTCGGATTGAACAGTTCGTGCACTTTGGACGGTGTACGGAGTGGGCGTCGGAACTCTCTAGTCGCGTACTGGTTTTCCTCGACACTGAGCTCCTCGTGGAGATGATTCGTATTTCGAGAACAGACTTTCATGCAAATCGCGCAACAGTAGGATCGTGGTCCCGCGTTCGAATTTCCGGTAACATCTTTGATTTGTTCCGAAGAGAGACTGATGTGCAATCCTGAAATGAATGAATAAA</canonical_amplicon>
		<polymorphic_amplicon>TAACGTTATTTTCGGATTGAACAGTTCGTGCACTTTGGACGGTGTACGGAGTGGGCGTCGGAACTCTCTAGTCGCGTACTGGTTTTCCTCGACACTGAGCTCCTCGTGGWGATGATTCGTATTTCGAGAACAGACTTTCATGCAAATCGCGCAACAGTAGGATCGTGGTCCCGCGTTCGAATTTCCGGTAACATCTTTGATTTGTTCCGAAGAGAGACTGATGTGCAATCCTGAAATGAATGAATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37400</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>388904</contig_pos>
        <strand>+</strand>
        <context>TTCGAGAACA[C/G]ACTTKCATGC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTCCTCGACACTGAGCTCCTCGTGGAGATGATTCGTATTTCGAGAACA</left_flank>
        <right_flank>ACTTTCATGCAAATCGCGCAACAGTAGGATCGTGGTCCCGCGTTCGAATT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGTTTCACAGGATGTGTATATTTTTATTCTCTTTTTGTGCTTGTTTATCAGATACAAACAACACAAATTTGCAAGACGCTTTTCCGATGGCCCAATGCTTTCAGAGGAGCTGTTGAATCTTAACAGTCCTGTTGCGACGAGTAGATCATCCGGAGCACCATCATCCTCCGCCAAGACTTCATCACAATCGATATCTTGGAGCAATCGTAACAATACCGTTTCTCGAGACTGAACATACCGTTTCTCGAGACCTCCTTACCAGCTTTCACGTTTTCCGCCGATTGTTCAGTCAATAAACGAGAAGCAACTTCTTGTCGATTCATCTCACTTTGACACGCGGATCTCACAAGTTCCAGTCTTCTCGATAACGTTATTTTCGGATTGAACAGTTCGTGCACTTTGGACGGTGTACGGAGTGGGCGTCGGAACTCTCTAGTCGCGTACTGGTTTTCCTCGACACTGAGCTCCTCGTGGAGATGATTCGTATTTCGAGAACAGACTTTCATGCAAATCGCGCAACAGTAGGATCGTGGTCCCGCGTTCGAATTTCCGGTAACATCTTTGATTTGTTCCGAAGAGAGACTGATGTGCAATCCTGAAATGAATGAATAAAATATATATTGAAAGCAGAATCTTCTCTATATCTAGTTCATTTTTATTTGACAGAACGTACGTAGGTTATTATTAGATTCATCAGCTTCTGCTAAATTCTCTACTCCTTCGAGGGGGACGCCGTCAGTGACATAAGTTGTGGTGTCTTCTTCTTCTTCTTCTTCAAACATTTTACGACGGCTACAAATGTTGGGGACTGTTAAAAGGTTATTTTATGCACTTAAAAACTTTCACAGGATGTGTAATTTTTGATTCAATAATCAAGTGATGAATGCCATGTTTCTGCTGCCTTAAAGGTGGGGAGACATGAAAAAATAATGTTCTCGAAATTCCGTGTAAATATGCCCCTCGAGGAGTTGAACTTGTGGGGGCGAGGATTGAAGATG</canonical>
            <polymorphic>TCTGTTTCACAGGATGTGTATATTTTTATTCTCTTTTTGTGCTTGTTTATCAGATACAAACAACACAAATTTGCAAGACGCTTTTCCGATGGCCCAATGCTTTCAGAGGAGCTGTTGAATCTTAACAGTCCTGTTGCGACGAGTAGATCATCCGGAGCACCATCATCCTCCGCCAAGACTTCATCACAATCGATATCTTGGAGCAATCGTAACAATACCGTTTCTCGAGACTGAACATACCGTTTCTCGAGACCTCCTTACCAGCTTTCACGTTTTCCGCCGATTGTTCAGTCAATAAACGAGAAGCAACTTCTTGTCGATTCATCTCACTTTGACACGCGGATCTCACAAGTTCCAGTCTTCTCGATAACGTTATTTTCGGATTGAACAGTTCGTGCACTTTGGACGGTGTACGGAGTGGGCGTCGGAACTCTCTAGTCGCGTACTGGTTTTCCTCGACACTGAGCTCCTCGTGGAGATGATTCGTATTTCGAGAACASACTTTCATGCAAATCGCGCAACAGTAGGATCGTGGTCCCGCGTTCGAATTTCCGGTAACATCTTTGATTTGTTCCGAAGAGAGACTGATGTGCAATCCTGAAATGAATGAATAAAATATATATTGAAAGCAGAATCTTCTCTATATCTAGTTCATTTTTATTTGACAGAACGTACGTAGGTTATTATTAGATTCATCAGCTTCTGCTAAATTCTCTACTCCTTCGAGGGGGACGCCGTCAGTGACATAAGTTGTGGTGTCTTCTTCTTCTTCTTCTTCAAACATTTTACGACGGCTACAAATGTTGGGGACTGTTAAAAGGTTATTTTATGCACTTAAAAACTTTCACAGGATGTGTAATTTTTGATTCAATAATCAAGTGATGAATGCCATGTTTCTGCTGCCTTAAAGGTGGGGAGACATGAAAAAATAATGTTCTCGAAATTCCGTGTAAATATGCCCCTCGAGGAGTTGAACTTGTGGGGGCGAGGATTGAAGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACGTTATTTTCGGATTGAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTATTCATTCATTTCAGGATTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TAACGTTATTTTCGGATTGAACAGTTCGTGCACTTTGGACGGTGTACGGAGTGGGCGTCGGAACTCTCTAGTCGCGTACTGGTTTTCCTCGACACTGAGCTCCTCGTGGAGATGATTCGTATTTCGAGAACAGACTTTCATGCAAATCGCGCAACAGTAGGATCGTGGTCCCGCGTTCGAATTTCCGGTAACATCTTTGATTTGTTCCGAAGAGAGACTGATGTGCAATCCTGAAATGAATGAATAAA</canonical_amplicon>
		<polymorphic_amplicon>TAACGTTATTTTCGGATTGAACAGTTCGTGCACTTTGGACGGTGTACGGAGTGGGCGTCGGAACTCTCTAGTCGCGTACTGGTTTTCCTCGACACTGAGCTCCTCGTGGAGATGATTCGTATTTCGAGAACASACTTTCATGCAAATCGCGCAACAGTAGGATCGTGGTCCCGCGTTCGAATTTCCGGTAACATCTTTGATTTGTTCCGAAGAGAGACTGATGTGCAATCCTGAAATGAATGAATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37401</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>388909</contig_pos>
        <strand>+</strand>
        <context>GAACASACTT[G/T]CATGCAAATC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCGACACTGAGCTCCTCGTGGAGATGATTCGTATTTCGAGAACAGACTT</left_flank>
        <right_flank>CATGCAAATCGCGCAACAGTAGGATCGTGGTCCCGCGTTCGAATTTCCGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCACAGGATGTGTATATTTTTATTCTCTTTTTGTGCTTGTTTATCAGATACAAACAACACAAATTTGCAAGACGCTTTTCCGATGGCCCAATGCTTTCAGAGGAGCTGTTGAATCTTAACAGTCCTGTTGCGACGAGTAGATCATCCGGAGCACCATCATCCTCCGCCAAGACTTCATCACAATCGATATCTTGGAGCAATCGTAACAATACCGTTTCTCGAGACTGAACATACCGTTTCTCGAGACCTCCTTACCAGCTTTCACGTTTTCCGCCGATTGTTCAGTCAATAAACGAGAAGCAACTTCTTGTCGATTCATCTCACTTTGACACGCGGATCTCACAAGTTCCAGTCTTCTCGATAACGTTATTTTCGGATTGAACAGTTCGTGCACTTTGGACGGTGTACGGAGTGGGCGTCGGAACTCTCTAGTCGCGTACTGGTTTTCCTCGACACTGAGCTCCTCGTGGAGATGATTCGTATTTCGAGAACAGACTTTCATGCAAATCGCGCAACAGTAGGATCGTGGTCCCGCGTTCGAATTTCCGGTAACATCTTTGATTTGTTCCGAAGAGAGACTGATGTGCAATCCTGAAATGAATGAATAAAATATATATTGAAAGCAGAATCTTCTCTATATCTAGTTCATTTTTATTTGACAGAACGTACGTAGGTTATTATTAGATTCATCAGCTTCTGCTAAATTCTCTACTCCTTCGAGGGGGACGCCGTCAGTGACATAAGTTGTGGTGTCTTCTTCTTCTTCTTCTTCAAACATTTTACGACGGCTACAAATGTTGGGGACTGTTAAAAGGTTATTTTATGCACTTAAAAACTTTCACAGGATGTGTAATTTTTGATTCAATAATCAAGTGATGAATGCCATGTTTCTGCTGCCTTAAAGGTGGGGAGACATGAAAAAATAATGTTCTCGAAATTCCGTGTAAATATGCCCCTCGAGGAGTTGAACTTGTGGGGGCGAGGATTGAAGATGCGGCG</canonical>
            <polymorphic>TTCACAGGATGTGTATATTTTTATTCTCTTTTTGTGCTTGTTTATCAGATACAAACAACACAAATTTGCAAGACGCTTTTCCGATGGCCCAATGCTTTCAGAGGAGCTGTTGAATCTTAACAGTCCTGTTGCGACGAGTAGATCATCCGGAGCACCATCATCCTCCGCCAAGACTTCATCACAATCGATATCTTGGAGCAATCGTAACAATACCGTTTCTCGAGACTGAACATACCGTTTCTCGAGACCTCCTTACCAGCTTTCACGTTTTCCGCCGATTGTTCAGTCAATAAACGAGAAGCAACTTCTTGTCGATTCATCTCACTTTGACACGCGGATCTCACAAGTTCCAGTCTTCTCGATAACGTTATTTTCGGATTGAACAGTTCGTGCACTTTGGACGGTGTACGGAGTGGGCGTCGGAACTCTCTAGTCGCGTACTGGTTTTCCTCGACACTGAGCTCCTCGTGGAGATGATTCGTATTTCGAGAACAGACTTKCATGCAAATCGCGCAACAGTAGGATCGTGGTCCCGCGTTCGAATTTCCGGTAACATCTTTGATTTGTTCCGAAGAGAGACTGATGTGCAATCCTGAAATGAATGAATAAAATATATATTGAAAGCAGAATCTTCTCTATATCTAGTTCATTTTTATTTGACAGAACGTACGTAGGTTATTATTAGATTCATCAGCTTCTGCTAAATTCTCTACTCCTTCGAGGGGGACGCCGTCAGTGACATAAGTTGTGGTGTCTTCTTCTTCTTCTTCTTCAAACATTTTACGACGGCTACAAATGTTGGGGACTGTTAAAAGGTTATTTTATGCACTTAAAAACTTTCACAGGATGTGTAATTTTTGATTCAATAATCAAGTGATGAATGCCATGTTTCTGCTGCCTTAAAGGTGGGGAGACATGAAAAAATAATGTTCTCGAAATTCCGTGTAAATATGCCCCTCGAGGAGTTGAACTTGTGGGGGCGAGGATTGAAGATGCGGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACGTTATTTTCGGATTGAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTATTCATTCATTTCAGGATTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TAACGTTATTTTCGGATTGAACAGTTCGTGCACTTTGGACGGTGTACGGAGTGGGCGTCGGAACTCTCTAGTCGCGTACTGGTTTTCCTCGACACTGAGCTCCTCGTGGAGATGATTCGTATTTCGAGAACAGACTTTCATGCAAATCGCGCAACAGTAGGATCGTGGTCCCGCGTTCGAATTTCCGGTAACATCTTTGATTTGTTCCGAAGAGAGACTGATGTGCAATCCTGAAATGAATGAATAAA</canonical_amplicon>
		<polymorphic_amplicon>TAACGTTATTTTCGGATTGAACAGTTCGTGCACTTTGGACGGTGTACGGAGTGGGCGTCGGAACTCTCTAGTCGCGTACTGGTTTTCCTCGACACTGAGCTCCTCGTGGAGATGATTCGTATTTCGAGAACAGACTTKCATGCAAATCGCGCAACAGTAGGATCGTGGTCCCGCGTTCGAATTTCCGGTAACATCTTTGATTTGTTCCGAAGAGAGACTGATGTGCAATCCTGAAATGAATGAATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37402</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>388959</contig_pos>
        <strand>+</strand>
        <context>CGAATTTCCG[A/G]TAACATCTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATGCAAATCGCGCAACAGTAGGATCGTGGTCCCGCGTTCGAATTTCCG</left_flank>
        <right_flank>TAACATCTTTGATTTGTTCCGAAGAGAGACTGATGTGCAATCCTGAAATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAAACAACACAAATTTGCAAGACGCTTTTCCGATGGCCCAATGCTTTCAGAGGAGCTGTTGAATCTTAACAGTCCTGTTGCGACGAGTAGATCATCCGGAGCACCATCATCCTCCGCCAAGACTTCATCACAATCGATATCTTGGAGCAATCGTAACAATACCGTTTCTCGAGACTGAACATACCGTTTCTCGAGACCTCCTTACCAGCTTTCACGTTTTCCGCCGATTGTTCAGTCAATAAACGAGAAGCAACTTCTTGTCGATTCATCTCACTTTGACACGCGGATCTCACAAGTTCCAGTCTTCTCGATAACGTTATTTTCGGATTGAACAGTTCGTGCACTTTGGACGGTGTACGGAGTGGGCGTCGGAACTCTCTAGTCGCGTACTGGTTTTCCTCGACACTGAGCTCCTCGTGGAGATGATTCGTATTTCGAGAACAGACTTTCATGCAAATCGCGCAACAGTAGGATCGTGGTCCCGCGTTCGAATTTCCGGTAACATCTTTGATTTGTTCCGAAGAGAGACTGATGTGCAATCCTGAAATGAATGAATAAAATATATATTGAAAGCAGAATCTTCTCTATATCTAGTTCATTTTTATTTGACAGAACGTACGTAGGTTATTATTAGATTCATCAGCTTCTGCTAAATTCTCTACTCCTTCGAGGGGGACGCCGTCAGTGACATAAGTTGTGGTGTCTTCTTCTTCTTCTTCTTCAAACATTTTACGACGGCTACAAATGTTGGGGACTGTTAAAAGGTTATTTTATGCACTTAAAAACTTTCACAGGATGTGTAATTTTTGATTCAATAATCAAGTGATGAATGCCATGTTTCTGCTGCCTTAAAGGTGGGGAGACATGAAAAAATAATGTTCTCGAAATTCCGTGTAAATATGCCCCTCGAGGAGTTGAACTTGTGGGGGCGAGGATTGAAGATGCGGCGCCGCTACCGACTGAACCACGCGGGCAAAGGGAAAGCCGCCATTTTTACTT</canonical>
            <polymorphic>ACAAACAACACAAATTTGCAAGACGCTTTTCCGATGGCCCAATGCTTTCAGAGGAGCTGTTGAATCTTAACAGTCCTGTTGCGACGAGTAGATCATCCGGAGCACCATCATCCTCCGCCAAGACTTCATCACAATCGATATCTTGGAGCAATCGTAACAATACCGTTTCTCGAGACTGAACATACCGTTTCTCGAGACCTCCTTACCAGCTTTCACGTTTTCCGCCGATTGTTCAGTCAATAAACGAGAAGCAACTTCTTGTCGATTCATCTCACTTTGACACGCGGATCTCACAAGTTCCAGTCTTCTCGATAACGTTATTTTCGGATTGAACAGTTCGTGCACTTTGGACGGTGTACGGAGTGGGCGTCGGAACTCTCTAGTCGCGTACTGGTTTTCCTCGACACTGAGCTCCTCGTGGAGATGATTCGTATTTCGAGAACAGACTTTCATGCAAATCGCGCAACAGTAGGATCGTGGTCCCGCGTTCGAATTTCCGRTAACATCTTTGATTTGTTCCGAAGAGAGACTGATGTGCAATCCTGAAATGAATGAATAAAATATATATTGAAAGCAGAATCTTCTCTATATCTAGTTCATTTTTATTTGACAGAACGTACGTAGGTTATTATTAGATTCATCAGCTTCTGCTAAATTCTCTACTCCTTCGAGGGGGACGCCGTCAGTGACATAAGTTGTGGTGTCTTCTTCTTCTTCTTCTTCAAACATTTTACGACGGCTACAAATGTTGGGGACTGTTAAAAGGTTATTTTATGCACTTAAAAACTTTCACAGGATGTGTAATTTTTGATTCAATAATCAAGTGATGAATGCCATGTTTCTGCTGCCTTAAAGGTGGGGAGACATGAAAAAATAATGTTCTCGAAATTCCGTGTAAATATGCCCCTCGAGGAGTTGAACTTGTGGGGGCGAGGATTGAAGATGCGGCGCCGCTACCGACTGAACCACGCGGGCAAAGGGAAAGCCGCCATTTTTACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>504 400 96</canonical_bands>
                <polymorphic_bands>904 96</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 400 97</canonical_bands>
                <polymorphic_bands>903 97</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>346 315 186 153</canonical_bands>
                <polymorphic_bands>532 315 153</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAACGTTATTTTCGGATTGAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTATTCATTCATTTCAGGATTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TAACGTTATTTTCGGATTGAACAGTTCGTGCACTTTGGACGGTGTACGGAGTGGGCGTCGGAACTCTCTAGTCGCGTACTGGTTTTCCTCGACACTGAGCTCCTCGTGGAGATGATTCGTATTTCGAGAACAGACTTTCATGCAAATCGCGCAACAGTAGGATCGTGGTCCCGCGTTCGAATTTCCGGTAACATCTTTGATTTGTTCCGAAGAGAGACTGATGTGCAATCCTGAAATGAATGAATAAA</canonical_amplicon>
		<polymorphic_amplicon>TAACGTTATTTTCGGATTGAACAGTTCGTGCACTTTGGACGGTGTACGGAGTGGGCGTCGGAACTCTCTAGTCGCGTACTGGTTTTCCTCGACACTGAGCTCCTCGTGGAGATGATTCGTATTTCGAGAACAGACTTTCATGCAAATCGCGCAACAGTAGGATCGTGGTCCCGCGTTCGAATTTCCGRTAACATCTTTGATTTGTTCCGAAGAGAGACTGATGTGCAATCCTGAAATGAATGAATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37403</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>389070</contig_pos>
        <strand>+</strand>
        <context>TTTTATTTGA[C/T]AGAACGTACG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATATATATTGAAAGCAGAATCTTCTCTATATCTAGTTCATTTTTATTTGA</left_flank>
        <right_flank>AGAACGTACGTAGGTTATTATTAGATTCATCAGCTTCTGCTAAATTCTCT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCCGCCAAGACTTCATCACAATCGATATCTTGGAGCAATCGTAACAATACCGTTTCTCGAGACTGAACATACCGTTTCTCGAGACCTCCTTACCAGCTTTCACGTTTTCCGCCGATTGTTCAGTCAATAAACGAGAAGCAACTTCTTGTCGATTCATCTCACTTTGACACGCGGATCTCACAAGTTCCAGTCTTCTCGATAACGTTATTTTCGGATTGAACAGTTCGTGCACTTTGGACGGTGTACGGAGTGGGCGTCGGAACTCTCTAGTCGCGTACTGGTTTTCCTCGACACTGAGCTCCTCGTGGAGATGATTCGTATTTCGAGAACAGACTTTCATGCAAATCGCGCAACAGTAGGATCGTGGTCCCGCGTTCGAATTTCCGGTAACATCTTTGATTTGTTCCGAAGAGAGACTGATGTGCAATCCTGAAATGAATGAATAAAATATATATTGAAAGCAGAATCTTCTCTATATCTAGTTCATTTTTATTTGACAGAACGTACGTAGGTTATTATTAGATTCATCAGCTTCTGCTAAATTCTCTACTCCTTCGAGGGGGACGCCGTCAGTGACATAAGTTGTGGTGTCTTCTTCTTCTTCTTCTTCAAACATTTTACGACGGCTACAAATGTTGGGGACTGTTAAAAGGTTATTTTATGCACTTAAAAACTTTCACAGGATGTGTAATTTTTGATTCAATAATCAAGTGATGAATGCCATGTTTCTGCTGCCTTAAAGGTGGGGAGACATGAAAAAATAATGTTCTCGAAATTCCGTGTAAATATGCCCCTCGAGGAGTTGAACTTGTGGGGGCGAGGATTGAAGATGCGGCGCCGCTACCGACTGAACCACGCGGGCAAAGGGAAAGCCGCCATTTTTACTTTTGAAAACTTCGTATTCCAGAAAATCAGATATGAGGAAAAGTTCAATGAAGAATGCTCCAAAGCTTTTGAGAAGTGTATTTTCTAGATAAAAAACTTGAATATTTCCTACT</canonical>
            <polymorphic>CCTCCGCCAAGACTTCATCACAATCGATATCTTGGAGCAATCGTAACAATACCGTTTCTCGAGACTGAACATACCGTTTCTCGAGACCTCCTTACCAGCTTTCACGTTTTCCGCCGATTGTTCAGTCAATAAACGAGAAGCAACTTCTTGTCGATTCATCTCACTTTGACACGCGGATCTCACAAGTTCCAGTCTTCTCGATAACGTTATTTTCGGATTGAACAGTTCGTGCACTTTGGACGGTGTACGGAGTGGGCGTCGGAACTCTCTAGTCGCGTACTGGTTTTCCTCGACACTGAGCTCCTCGTGGAGATGATTCGTATTTCGAGAACAGACTTTCATGCAAATCGCGCAACAGTAGGATCGTGGTCCCGCGTTCGAATTTCCGGTAACATCTTTGATTTGTTCCGAAGAGAGACTGATGTGCAATCCTGAAATGAATGAATAAAATATATATTGAAAGCAGAATCTTCTCTATATCTAGTTCATTTTTATTTGAYAGAACGTACGTAGGTTATTATTAGATTCATCAGCTTCTGCTAAATTCTCTACTCCTTCGAGGGGGACGCCGTCAGTGACATAAGTTGTGGTGTCTTCTTCTTCTTCTTCTTCAAACATTTTACGACGGCTACAAATGTTGGGGACTGTTAAAAGGTTATTTTATGCACTTAAAAACTTTCACAGGATGTGTAATTTTTGATTCAATAATCAAGTGATGAATGCCATGTTTCTGCTGCCTTAAAGGTGGGGAGACATGAAAAAATAATGTTCTCGAAATTCCGTGTAAATATGCCCCTCGAGGAGTTGAACTTGTGGGGGCGAGGATTGAAGATGCGGCGCCGCTACCGACTGAACCACGCGGGCAAAGGGAAAGCCGCCATTTTTACTTTTGAAAACTTCGTATTCCAGAAAATCAGATATGAGGAAAAGTTCAATGAAGAATGCTCCAAAGCTTTTGAGAAGTGTATTTTCTAGATAAAAAACTTGAATATTTCCTACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATCCTGAAATGAATGAATAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTAAGTGCATAAAATAACCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAATCCTGAAATGAATGAATAAAATATATATTGAAAGCAGAATCTTCTCTATATCTAGTTCATTTTTATTTGACAGAACGTACGTAGGTTATTATTAGATTCATCAGCTTCTGCTAAATTCTCTACTCCTTCGAGGGGGACGCCGTCAGTGACATAAGTTGTGGTGTCTTCTTCTTCTTCTTCTTCAAACATTTTACGACGGCTACAAATGTTGGGGACTGTTAAAAGGTTATTTTATGCACTTAAAA</canonical_amplicon>
		<polymorphic_amplicon>CAATCCTGAAATGAATGAATAAAATATATATTGAAAGCAGAATCTTCTCTATATCTAGTTCATTTTTATTTGAYAGAACGTACGTAGGTTATTATTAGATTCATCAGCTTCTGCTAAATTCTCTACTCCTTCGAGGGGGACGCCGTCAGTGACATAAGTTGTGGTGTCTTCTTCTTCTTCTTCTTCAAACATTTTACGACGGCTACAAATGTTGGGGACTGTTAAAAGGTTATTTTATGCACTTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37404</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>389112</contig_pos>
        <strand>+</strand>
        <context>AGCTTCTGCT[A/G]AATTCTCTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATTTGACAGAACGTACGTAGGTTATTATTAGATTCATCAGCTTCTGCT</left_flank>
        <right_flank>AATTCTCTACTCCTTCGAGGGGGACGCCGTCAGTGACATAAGTTGTGGTG</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAACAATACCGTTTCTCGAGACTGAACATACCGTTTCTCGAGACCTCCTTACCAGCTTTCACGTTTTCCGCCGATTGTTCAGTCAATAAACGAGAAGCAACTTCTTGTCGATTCATCTCACTTTGACACGCGGATCTCACAAGTTCCAGTCTTCTCGATAACGTTATTTTCGGATTGAACAGTTCGTGCACTTTGGACGGTGTACGGAGTGGGCGTCGGAACTCTCTAGTCGCGTACTGGTTTTCCTCGACACTGAGCTCCTCGTGGAGATGATTCGTATTTCGAGAACAGACTTTCATGCAAATCGCGCAACAGTAGGATCGTGGTCCCGCGTTCGAATTTCCGGTAACATCTTTGATTTGTTCCGAAGAGAGACTGATGTGCAATCCTGAAATGAATGAATAAAATATATATTGAAAGCAGAATCTTCTCTATATCTAGTTCATTTTTATTTGACAGAACGTACGTAGGTTATTATTAGATTCATCAGCTTCTGCTAAATTCTCTACTCCTTCGAGGGGGACGCCGTCAGTGACATAAGTTGTGGTGTCTTCTTCTTCTTCTTCTTCAAACATTTTACGACGGCTACAAATGTTGGGGACTGTTAAAAGGTTATTTTATGCACTTAAAAACTTTCACAGGATGTGTAATTTTTGATTCAATAATCAAGTGATGAATGCCATGTTTCTGCTGCCTTAAAGGTGGGGAGACATGAAAAAATAATGTTCTCGAAATTCCGTGTAAATATGCCCCTCGAGGAGTTGAACTTGTGGGGGCGAGGATTGAAGATGCGGCGCCGCTACCGACTGAACCACGCGGGCAAAGGGAAAGCCGCCATTTTTACTTTTGAAAACTTCGTATTCCAGAAAATCAGATATGAGGAAAAGTTCAATGAAGAATGCTCCAAAGCTTTTGAGAAGTGTATTTTCTAGATAAAAAACTTGAATATTTCCTACTGATATTTGATTTTCCGGAAAACTTTGCGCCACCAACCGAATG</canonical>
            <polymorphic>GTAACAATACCGTTTCTCGAGACTGAACATACCGTTTCTCGAGACCTCCTTACCAGCTTTCACGTTTTCCGCCGATTGTTCAGTCAATAAACGAGAAGCAACTTCTTGTCGATTCATCTCACTTTGACACGCGGATCTCACAAGTTCCAGTCTTCTCGATAACGTTATTTTCGGATTGAACAGTTCGTGCACTTTGGACGGTGTACGGAGTGGGCGTCGGAACTCTCTAGTCGCGTACTGGTTTTCCTCGACACTGAGCTCCTCGTGGAGATGATTCGTATTTCGAGAACAGACTTTCATGCAAATCGCGCAACAGTAGGATCGTGGTCCCGCGTTCGAATTTCCGGTAACATCTTTGATTTGTTCCGAAGAGAGACTGATGTGCAATCCTGAAATGAATGAATAAAATATATATTGAAAGCAGAATCTTCTCTATATCTAGTTCATTTTTATTTGACAGAACGTACGTAGGTTATTATTAGATTCATCAGCTTCTGCTRAATTCTCTACTCCTTCGAGGGGGACGCCGTCAGTGACATAAGTTGTGGTGTCTTCTTCTTCTTCTTCTTCAAACATTTTACGACGGCTACAAATGTTGGGGACTGTTAAAAGGTTATTTTATGCACTTAAAAACTTTCACAGGATGTGTAATTTTTGATTCAATAATCAAGTGATGAATGCCATGTTTCTGCTGCCTTAAAGGTGGGGAGACATGAAAAAATAATGTTCTCGAAATTCCGTGTAAATATGCCCCTCGAGGAGTTGAACTTGTGGGGGCGAGGATTGAAGATGCGGCGCCGCTACCGACTGAACCACGCGGGCAAAGGGAAAGCCGCCATTTTTACTTTTGAAAACTTCGTATTCCAGAAAATCAGATATGAGGAAAAGTTCAATGAAGAATGCTCCAAAGCTTTTGAGAAGTGTATTTTCTAGATAAAAAACTTGAATATTTCCTACTGATATTTGATTTTCCGGAAAACTTTGCGCCACCAACCGAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>338 267 233 162</canonical_bands>
                <polymorphic_bands>395 338 267</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAAGCAGAATCTTCTCTATATCT</pcr_primer_p1>
		<pcr_primer_p2>TTGAATCAAAAATTACACATCCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGAAAGCAGAATCTTCTCTATATCTAGTTCATTTTTATTTGACAGAACGTACGTAGGTTATTATTAGATTCATCAGCTTCTGCTAAATTCTCTACTCCTTCGAGGGGGACGCCGTCAGTGACATAAGTTGTGGTGTCTTCTTCTTCTTCTTCTTCAAACATTTTACGACGGCTACAAATGTTGGGGACTGTTAAAAGGTTATTTTATGCACTTAAAAACTTTCACAGGATGTGTAATTTTTGATTCAA</canonical_amplicon>
		<polymorphic_amplicon>TGAAAGCAGAATCTTCTCTATATCTAGTTCATTTTTATTTGACAGAACGTACGTAGGTTATTATTAGATTCATCAGCTTCTGCTRAATTCTCTACTCCTTCGAGGGGGACGCCGTCAGTGACATAAGTTGTGGTGTCTTCTTCTTCTTCTTCTTCAAACATTTTACGACGGCTACAAATGTTGGGGACTGTTAAAAGGTTATTTTATGCACTTAAAAACTTTCACAGGATGTGTAATTTTTGATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37405</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>389164</contig_pos>
        <strand>+</strand>
        <context>GTTGTGGTGt[A/G]ttcttcttct</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCTCTACTCCTTCGAGGGGGACGCCGTCAGTGACATAAGTTGTGGTGT</left_flank>
        <right_flank>TTCTTCTTCTTCTTCTTCAAACATTTTACGACGGCTACAAATGTTGGGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGCTTTCACGTTTTCCGCCGATTGTTCAGTCAATAAACGAGAAGCAACTTCTTGTCGATTCATCTCACTTTGACACGCGGATCTCACAAGTTCCAGTCTTCTCGATAACGTTATTTTCGGATTGAACAGTTCGTGCACTTTGGACGGTGTACGGAGTGGGCGTCGGAACTCTCTAGTCGCGTACTGGTTTTCCTCGACACTGAGCTCCTCGTGGAGATGATTCGTATTTCGAGAACAGACTTTCATGCAAATCGCGCAACAGTAGGATCGTGGTCCCGCGTTCGAATTTCCGGTAACATCTTTGATTTGTTCCGAAGAGAGACTGATGTGCAATCCTGAAATGAATGAATAAAATATATATTGAAAGCAGAATCTTCTCTATATCTAGTTCATTTTTATTTGACAGAACGTACGTAGGTTATTATTAGATTCATCAGCTTCTGCTAAATTCTCTACTCCTTCGAGGGGGACGCCGTCAGTGACATAAGTTGTGGTGTCTTCTTCTTCTTCTTCTTCAAACATTTTACGACGGCTACAAATGTTGGGGACTGTTAAAAGGTTATTTTATGCACTTAAAAACTTTCACAGGATGTGTAATTTTTGATTCAATAATCAAGTGATGAATGCCATGTTTCTGCTGCCTTAAAGGTGGGGAGACATGAAAAAATAATGTTCTCGAAATTCCGTGTAAATATGCCCCTCGAGGAGTTGAACTTGTGGGGGCGAGGATTGAAGATGCGGCGCCGCTACCGACTGAACCACGCGGGCAAAGGGAAAGCCGCCATTTTTACTTTTGAAAACTTCGTATTCCAGAAAATCAGATATGAGGAAAAGTTCAATGAAGAATGCTCCAAAGCTTTTGAGAAGTGTATTTTCTAGATAAAAAACTTGAATATTTCCTACTGATATTTGATTTTCCGGAAAACTTTGCGCCACCAACCGAATGCTCTTGAGAAAGTTTTGAAATTGTTTTTCGAGAATGCTTCGAGCAGACTTAT</canonical>
            <polymorphic>CCAGCTTTCACGTTTTCCGCCGATTGTTCAGTCAATAAACGAGAAGCAACTTCTTGTCGATTCATCTCACTTTGACACGCGGATCTCACAAGTTCCAGTCTTCTCGATAACGTTATTTTCGGATTGAACAGTTCGTGCACTTTGGACGGTGTACGGAGTGGGCGTCGGAACTCTCTAGTCGCGTACTGGTTTTCCTCGACACTGAGCTCCTCGTGGAGATGATTCGTATTTCGAGAACAGACTTTCATGCAAATCGCGCAACAGTAGGATCGTGGTCCCGCGTTCGAATTTCCGGTAACATCTTTGATTTGTTCCGAAGAGAGACTGATGTGCAATCCTGAAATGAATGAATAAAATATATATTGAAAGCAGAATCTTCTCTATATCTAGTTCATTTTTATTTGACAGAACGTACGTAGGTTATTATTAGATTCATCAGCTTCTGCTAAATTCTCTACTCCTTCGAGGGGGACGCCGTCAGTGACATAAGTTGTGGTGTRTTCTTCTTCTTCTTCTTCAAACATTTTACGACGGCTACAAATGTTGGGGACTGTTAAAAGGTTATTTTATGCACTTAAAAACTTTCACAGGATGTGTAATTTTTGATTCAATAATCAAGTGATGAATGCCATGTTTCTGCTGCCTTAAAGGTGGGGAGACATGAAAAAATAATGTTCTCGAAATTCCGTGTAAATATGCCCCTCGAGGAGTTGAACTTGTGGGGGCGAGGATTGAAGATGCGGCGCCGCTACCGACTGAACCACGCGGGCAAAGGGAAAGCCGCCATTTTTACTTTTGAAAACTTCGTATTCCAGAAAATCAGATATGAGGAAAAGTTCAATGAAGAATGCTCCAAAGCTTTTGAGAAGTGTATTTTCTAGATAAAAAACTTGAATATTTCCTACTGATATTTGATTTTCCGGAAAACTTTGCGCCACCAACCGAATGCTCTTGAGAAAGTTTTGAAATTGTTTTTCGAGAATGCTTCGAGCAGACTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAGCAGAATCTTCTCTATATCT</pcr_primer_p1>
		<pcr_primer_p2>TTGAATCAAAAATTACACATCCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGAAAGCAGAATCTTCTCTATATCTAGTTCATTTTTATTTGACAGAACGTACGTAGGTTATTATTAGATTCATCAGCTTCTGCTAAATTCTCTACTCCTTCGAGGGGGACGCCGTCAGTGACATAAGTTGTGGTGTCTTCTTCTTCTTCTTCTTCAAACATTTTACGACGGCTACAAATGTTGGGGACTGTTAAAAGGTTATTTTATGCACTTAAAAACTTTCACAGGATGTGTAATTTTTGATTCAA</canonical_amplicon>
		<polymorphic_amplicon>TGAAAGCAGAATCTTCTCTATATCTAGTTCATTTTTATTTGACAGAACGTACGTAGGTTATTATTAGATTCATCAGCTTCTGCTAAATTCTCTACTCCTTCGAGGGGGACGCCGTCAGTGACATAAGTTGTGGTGTRTTCTTCTTCTTCTTCTTCAAACATTTTACGACGGCTACAAATGTTGGGGACTGTTAAAAGGTTATTTTATGCACTTAAAAACTTTCACAGGATGTGTAATTTTTGATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37406</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>389185</contig_pos>
        <strand></strand>
        <context>tcttcttcAA[A/G]CATTTTACGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACGCCGTCAGTGACATAAGTTGTGGTGTCTTCTTCTTCTTCTTCTTCAA</left_flank>
        <right_flank>CATTTTACGACGGCTACAAATGTTGGGGACTGTTAAAAGGTTATTTTATG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTGTTCAGTCAATAAACGAGAAGCAACTTCTTGTCGATTCATCTCACTTTGACACGCGGATCTCACAAGTTCCAGTCTTCTCGATAACGTTATTTTCGGATTGAACAGTTCGTGCACTTTGGACGGTGTACGGAGTGGGCGTCGGAACTCTCTAGTCGCGTACTGGTTTTCCTCGACACTGAGCTCCTCGTGGAGATGATTCGTATTTCGAGAACAGACTTTCATGCAAATCGCGCAACAGTAGGATCGTGGTCCCGCGTTCGAATTTCCGGTAACATCTTTGATTTGTTCCGAAGAGAGACTGATGTGCAATCCTGAAATGAATGAATAAAATATATATTGAAAGCAGAATCTTCTCTATATCTAGTTCATTTTTATTTGACAGAACGTACGTAGGTTATTATTAGATTCATCAGCTTCTGCTAAATTCTCTACTCCTTCGAGGGGGACGCCGTCAGTGACATAAGTTGTGGTGTCTTCTTCTTCTTCTTCTTCAAACATTTTACGACGGCTACAAATGTTGGGGACTGTTAAAAGGTTATTTTATGCACTTAAAAACTTTCACAGGATGTGTAATTTTTGATTCAATAATCAAGTGATGAATGCCATGTTTCTGCTGCCTTAAAGGTGGGGAGACATGAAAAAATAATGTTCTCGAAATTCCGTGTAAATATGCCCCTCGAGGAGTTGAACTTGTGGGGGCGAGGATTGAAGATGCGGCGCCGCTACCGACTGAACCACGCGGGCAAAGGGAAAGCCGCCATTTTTACTTTTGAAAACTTCGTATTCCAGAAAATCAGATATGAGGAAAAGTTCAATGAAGAATGCTCCAAAGCTTTTGAGAAGTGTATTTTCTAGATAAAAAACTTGAATATTTCCTACTGATATTTGATTTTCCGGAAAACTTTGCGCCACCAACCGAATGCTCTTGAGAAAGTTTTGAAATTGTTTTTCGAGAATGCTTCGAGCAGACTTATCGCGCATGTATTTCGAATAAG</canonical>
            <polymorphic>GATTGTTCAGTCAATAAACGAGAAGCAACTTCTTGTCGATTCATCTCACTTTGACACGCGGATCTCACAAGTTCCAGTCTTCTCGATAACGTTATTTTCGGATTGAACAGTTCGTGCACTTTGGACGGTGTACGGAGTGGGCGTCGGAACTCTCTAGTCGCGTACTGGTTTTCCTCGACACTGAGCTCCTCGTGGAGATGATTCGTATTTCGAGAACAGACTTTCATGCAAATCGCGCAACAGTAGGATCGTGGTCCCGCGTTCGAATTTCCGGTAACATCTTTGATTTGTTCCGAAGAGAGACTGATGTGCAATCCTGAAATGAATGAATAAAATATATATTGAAAGCAGAATCTTCTCTATATCTAGTTCATTTTTATTTGACAGAACGTACGTAGGTTATTATTAGATTCATCAGCTTCTGCTAAATTCTCTACTCCTTCGAGGGGGACGCCGTCAGTGACATAAGTTGTGGTGTCTTCTTCTTCTTCTTCTTCAARCATTTTACGACGGCTACAAATGTTGGGGACTGTTAAAAGGTTATTTTATGCACTTAAAAACTTTCACAGGATGTGTAATTTTTGATTCAATAATCAAGTGATGAATGCCATGTTTCTGCTGCCTTAAAGGTGGGGAGACATGAAAAAATAATGTTCTCGAAATTCCGTGTAAATATGCCCCTCGAGGAGTTGAACTTGTGGGGGCGAGGATTGAAGATGCGGCGCCGCTACCGACTGAACCACGCGGGCAAAGGGAAAGCCGCCATTTTTACTTTTGAAAACTTCGTATTCCAGAAAATCAGATATGAGGAAAAGTTCAATGAAGAATGCTCCAAAGCTTTTGAGAAGTGTATTTTCTAGATAAAAAACTTGAATATTTCCTACTGATATTTGATTTTCCGGAAAACTTTGCGCCACCAACCGAATGCTCTTGAGAAAGTTTTGAAATTGTTTTTCGAGAATGCTTCGAGCAGACTTATCGCGCATGTATTTCGAATAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAGCAGAATCTTCTCTATATCT</pcr_primer_p1>
		<pcr_primer_p2>TTGAATCAAAAATTACACATCCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGAAAGCAGAATCTTCTCTATATCTAGTTCATTTTTATTTGACAGAACGTACGTAGGTTATTATTAGATTCATCAGCTTCTGCTAAATTCTCTACTCCTTCGAGGGGGACGCCGTCAGTGACATAAGTTGTGGTGTCTTCTTCTTCTTCTTCTTCAAACATTTTACGACGGCTACAAATGTTGGGGACTGTTAAAAGGTTATTTTATGCACTTAAAAACTTTCACAGGATGTGTAATTTTTGATTCAA</canonical_amplicon>
		<polymorphic_amplicon>TGAAAGCAGAATCTTCTCTATATCTAGTTCATTTTTATTTGACAGAACGTACGTAGGTTATTATTAGATTCATCAGCTTCTGCTAAATTCTCTACTCCTTCGAGGGGGACGCCGTCAGTGACATAAGTTGTGGTGTCTTCTTCTTCTTCTTCTTCAARCATTTTACGACGGCTACAAATGTTGGGGACTGTTAAAAGGTTATTTTATGCACTTAAAAACTTTCACAGGATGTGTAATTTTTGATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37407</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>389211</contig_pos>
        <strand></strand>
        <context>ACAAATGTTG[G/A]GGACTGTTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGTCTTCTTCTTCTTCTTCTTCAAACATTTTACGACGGCTACAAATGTTG</left_flank>
        <right_flank>GGACTGTTAAAAGGTTATTTTATGCACTTAAAAACTTTCACAGGATGTGT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTTCTTGTCGATTCATCTCACTTTGACACGCGGATCTCACAAGTTCCAGTCTTCTCGATAACGTTATTTTCGGATTGAACAGTTCGTGCACTTTGGACGGTGTACGGAGTGGGCGTCGGAACTCTCTAGTCGCGTACTGGTTTTCCTCGACACTGAGCTCCTCGTGGAGATGATTCGTATTTCGAGAACAGACTTTCATGCAAATCGCGCAACAGTAGGATCGTGGTCCCGCGTTCGAATTTCCGGTAACATCTTTGATTTGTTCCGAAGAGAGACTGATGTGCAATCCTGAAATGAATGAATAAAATATATATTGAAAGCAGAATCTTCTCTATATCTAGTTCATTTTTATTTGACAGAACGTACGTAGGTTATTATTAGATTCATCAGCTTCTGCTAAATTCTCTACTCCTTCGAGGGGGACGCCGTCAGTGACATAAGTTGTGGTGTCTTCTTCTTCTTCTTCTTCAAACATTTTACGACGGCTACAAATGTTGGGGACTGTTAAAAGGTTATTTTATGCACTTAAAAACTTTCACAGGATGTGTAATTTTTGATTCAATAATCAAGTGATGAATGCCATGTTTCTGCTGCCTTAAAGGTGGGGAGACATGAAAAAATAATGTTCTCGAAATTCCGTGTAAATATGCCCCTCGAGGAGTTGAACTTGTGGGGGCGAGGATTGAAGATGCGGCGCCGCTACCGACTGAACCACGCGGGCAAAGGGAAAGCCGCCATTTTTACTTTTGAAAACTTCGTATTCCAGAAAATCAGATATGAGGAAAAGTTCAATGAAGAATGCTCCAAAGCTTTTGAGAAGTGTATTTTCTAGATAAAAAACTTGAATATTTCCTACTGATATTTGATTTTCCGGAAAACTTTGCGCCACCAACCGAATGCTCTTGAGAAAGTTTTGAAATTGTTTTTCGAGAATGCTTCGAGCAGACTTATCGCGCATGTATTTCGAATAAGTATTGAGGTGATTTTTTCCAATTATG</canonical>
            <polymorphic>AACTTCTTGTCGATTCATCTCACTTTGACACGCGGATCTCACAAGTTCCAGTCTTCTCGATAACGTTATTTTCGGATTGAACAGTTCGTGCACTTTGGACGGTGTACGGAGTGGGCGTCGGAACTCTCTAGTCGCGTACTGGTTTTCCTCGACACTGAGCTCCTCGTGGAGATGATTCGTATTTCGAGAACAGACTTTCATGCAAATCGCGCAACAGTAGGATCGTGGTCCCGCGTTCGAATTTCCGGTAACATCTTTGATTTGTTCCGAAGAGAGACTGATGTGCAATCCTGAAATGAATGAATAAAATATATATTGAAAGCAGAATCTTCTCTATATCTAGTTCATTTTTATTTGACAGAACGTACGTAGGTTATTATTAGATTCATCAGCTTCTGCTAAATTCTCTACTCCTTCGAGGGGGACGCCGTCAGTGACATAAGTTGTGGTGTCTTCTTCTTCTTCTTCTTCAAACATTTTACGACGGCTACAAATGTTGRGGACTGTTAAAAGGTTATTTTATGCACTTAAAAACTTTCACAGGATGTGTAATTTTTGATTCAATAATCAAGTGATGAATGCCATGTTTCTGCTGCCTTAAAGGTGGGGAGACATGAAAAAATAATGTTCTCGAAATTCCGTGTAAATATGCCCCTCGAGGAGTTGAACTTGTGGGGGCGAGGATTGAAGATGCGGCGCCGCTACCGACTGAACCACGCGGGCAAAGGGAAAGCCGCCATTTTTACTTTTGAAAACTTCGTATTCCAGAAAATCAGATATGAGGAAAAGTTCAATGAAGAATGCTCCAAAGCTTTTGAGAAGTGTATTTTCTAGATAAAAAACTTGAATATTTCCTACTGATATTTGATTTTCCGGAAAACTTTGCGCCACCAACCGAATGCTCTTGAGAAAGTTTTGAAATTGTTTTTCGAGAATGCTTCGAGCAGACTTATCGCGCATGTATTTCGAATAAGTATTGAGGTGATTTTTTCCAATTATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAGCAGAATCTTCTCTATATCT</pcr_primer_p1>
		<pcr_primer_p2>TTGAATCAAAAATTACACATCCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGAAAGCAGAATCTTCTCTATATCTAGTTCATTTTTATTTGACAGAACGTACGTAGGTTATTATTAGATTCATCAGCTTCTGCTAAATTCTCTACTCCTTCGAGGGGGACGCCGTCAGTGACATAAGTTGTGGTGTCTTCTTCTTCTTCTTCTTCAAACATTTTACGACGGCTACAAATGTTGGGGACTGTTAAAAGGTTATTTTATGCACTTAAAAACTTTCACAGGATGTGTAATTTTTGATTCAA</canonical_amplicon>
		<polymorphic_amplicon>TGAAAGCAGAATCTTCTCTATATCTAGTTCATTTTTATTTGACAGAACGTACGTAGGTTATTATTAGATTCATCAGCTTCTGCTAAATTCTCTACTCCTTCGAGGGGGACGCCGTCAGTGACATAAGTTGTGGTGTCTTCTTCTTCTTCTTCTTCAAACATTTTACGACGGCTACAAATGTTGRGGACTGTTAAAAGGTTATTTTATGCACTTAAAAACTTTCACAGGATGTGTAATTTTTGATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37408</snp_id>
        <super_contig>c012100856.Contig2</super_contig>
        <contig_pos>389322</contig_pos>
        <strand></strand>
        <context>AAGGTGGGGA[G/T]ACATGAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCAATAATCAAGTGATGAATGCCATGTTTCTGCTGCCTTAAAGGTGGGGA</left_flank>
        <right_flank>ACATGAAAAAATAATGTTCTCGAAATTCCGTGTAAATATGCCCCTCGAGG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGCGTCGGAACTCTCTAGTCGCGTACTGGTTTTCCTCGACACTGAGCTCCTCGTGGAGATGATTCGTATTTCGAGAACAGACTTTCATGCAAATCGCGCAACAGTAGGATCGTGGTCCCGCGTTCGAATTTCCGGTAACATCTTTGATTTGTTCCGAAGAGAGACTGATGTGCAATCCTGAAATGAATGAATAAAATATATATTGAAAGCAGAATCTTCTCTATATCTAGTTCATTTTTATTTGACAGAACGTACGTAGGTTATTATTAGATTCATCAGCTTCTGCTAAATTCTCTACTCCTTCGAGGGGGACGCCGTCAGTGACATAAGTTGTGGTGTCTTCTTCTTCTTCTTCTTCAAACATTTTACGACGGCTACAAATGTTGGGGACTGTTAAAAGGTTATTTTATGCACTTAAAAACTTTCACAGGATGTGTAATTTTTGATTCAATAATCAAGTGATGAATGCCATGTTTCTGCTGCCTTAAAGGTGGGGAGACATGAAAAAATAATGTTCTCGAAATTCCGTGTAAATATGCCCCTCGAGGAGTTGAACTTGTGGGGGCGAGGATTGAAGATGCGGCGCCGCTACCGACTGAACCACGCGGGCAAAGGGAAAGCCGCCATTTTTACTTTTGAAAACTTCGTATTCCAGAAAATCAGATATGAGGAAAAGTTCAATGAAGAATGCTCCAAAGCTTTTGAGAAGTGTATTTTCTAGATAAAAAACTTGAATATTTCCTACTGATATTTGATTTTCCGGAAAACTTTGCGCCACCAACCGAATGCTCTTGAGAAAGTTTTGAAATTGTTTTTCGAGAATGCTTCGAGCAGACTTATCGCGCATGTATTTCGAATAAGTATTGAGGTGATTTTTTCCAATTATGGAAAAATTCGTTTTTTTTTCTAAAAAATGCCATTTCAAAAGCTTCATGAAAGTCGCGCAAATGCCACCATAATATCCAATAAAACTTATCCTTACTAACTAGAATATCGGT</canonical>
            <polymorphic>TGGGCGTCGGAACTCTCTAGTCGCGTACTGGTTTTCCTCGACACTGAGCTCCTCGTGGAGATGATTCGTATTTCGAGAACAGACTTTCATGCAAATCGCGCAACAGTAGGATCGTGGTCCCGCGTTCGAATTTCCGGTAACATCTTTGATTTGTTCCGAAGAGAGACTGATGTGCAATCCTGAAATGAATGAATAAAATATATATTGAAAGCAGAATCTTCTCTATATCTAGTTCATTTTTATTTGACAGAACGTACGTAGGTTATTATTAGATTCATCAGCTTCTGCTAAATTCTCTACTCCTTCGAGGGGGACGCCGTCAGTGACATAAGTTGTGGTGTCTTCTTCTTCTTCTTCTTCAAACATTTTACGACGGCTACAAATGTTGGGGACTGTTAAAAGGTTATTTTATGCACTTAAAAACTTTCACAGGATGTGTAATTTTTGATTCAATAATCAAGTGATGAATGCCATGTTTCTGCTGCCTTAAAGGTGGGGAKACATGAAAAAATAATGTTCTCGAAATTCCGTGTAAATATGCCCCTCGAGGAGTTGAACTTGTGGGGGCGAGGATTGAAGATGCGGCGCCGCTACCGACTGAACCACGCGGGCAAAGGGAAAGCCGCCATTTTTACTTTTGAAAACTTCGTATTCCAGAAAATCAGATATGAGGAAAAGTTCAATGAAGAATGCTCCAAAGCTTTTGAGAAGTGTATTTTCTAGATAAAAAACTTGAATATTTCCTACTGATATTTGATTTTCCGGAAAACTTTGCGCCACCAACCGAATGCTCTTGAGAAAGTTTTGAAATTGTTTTTCGAGAATGCTTCGAGCAGACTTATCGCGCATGTATTTCGAATAAGTATTGAGGTGATTTTTTCCAATTATGGAAAAATTCGTTTTTTTTTCTAAAAAATGCCATTTCAAAAGCTTCATGAAAGTCGCGCAAATGCCACCATAATATCCAATAAAACTTATCCTTACTAACTAGAATATCGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAGGATGTGTAATTTTTGATT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCCTCATATCTGATTTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACAGGATGTGTAATTTTTGATTCAATAATCAAGTGATGAATGCCATGTTTCTGCTGCCTTAAAGGTGGGGAGACATGAAAAAATAATGTTCTCGAAATTCCGTGTAAATATGCCCCTCGAGGAGTTGAACTTGTGGGGGCGAGGATTGAAGATGCGGCGCCGCTACCGACTGAACCACGCGGGCAAAGGGAAAGCCGCCATTTTTACTTTTGAAAACTTCGTATTCCAGAAAATCAGATATGAGGAAAA</canonical_amplicon>
		<polymorphic_amplicon>CACAGGATGTGTAATTTTTGATTCAATAATCAAGTGATGAATGCCATGTTTCTGCTGCCTTAAAGGTGGGGAKACATGAAAAAATAATGTTCTCGAAATTCCGTGTAAATATGCCCCTCGAGGAGTTGAACTTGTGGGGGCGAGGATTGAAGATGCGGCGCCGCTACCGACTGAACCACGCGGGCAAAGGGAAAGCCGCCATTTTTACTTTTGAAAACTTCGTATTCCAGAAAATCAGATATGAGGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37409</snp_id>
        <super_contig>c012100907.Contig1</super_contig>
        <contig_pos>1307</contig_pos>
        <strand></strand>
        <context>tcaacggggg[T/C]cgcggggggt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>NNAAAAGATATATTTTCCTCACGTAAATATTCGCGGGGGGTCAACGGGGG</left_flank>
        <right_flank>CGCGGGGGGTGAGCCCCCCGGGTGGGTGCGGGCGGGTGAATCGCCCCCCA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGTCCGATTCAAAAATTACAAAAATTTGGAGAACATCAAAGAAAAATTCTCATTGGATCCAGAAGATTCTATCCATTCAATTGCTCCATTTTACAACAGATCTCAAAATTCAATGTGTTAGTTTTTTTTTTACAAATTTTGAGTTTTTCGAAAATCAAAACCTTCTTCCAGACATCCTTGTTCCAATATTTGATTATCCAATTTTCGATCCAAACTATCCAAAATCTTCAAAACTTGCATCTACTGGATCCTTGATTGCACAGGCTATAGGAGGAAGTATTGATTTTATTGGACAAGATGGACACAACAAATGTCTAATAGATCAGCATAATCAAAATAAGTCTGGAAAATCGGTATGTTTTTGATTCGTAGGACTCAAAAGTAGGGTTTCCATTTGGGCGGGTGAAGAAGCGGGCTACCCGCAACCCACCCGGGGGGNNNNNNNNNNNAAAAGATATATTTTCCTCACGTAAATATTCGCGGGGGGTCAACGGGGGTCGCGGGGGGTGAGCCCCCCGGGTGGGTGCGGGCGGGTGAATCGCCCCCCAAATGGAAACCCTACTCAAAAGTTATGAATTCCATTCGGTCGGGAAATTTAGCCAACCGACCGACCGCCGACCCAGCCGAGCCGTCGGTCAGTCAGCGGTCGGTCAGAGGAGGTCAGCGGCCGATTTCCGACCGACCAAAATTCTAGAACCTTCAATTTTCATCTTTCCAGCAAAACCAGACACTCCCCATCGAGGCATTAATTTCTCAACAGCATGCCATTGAAGCCACGTGGCAAACTTTCAAAAATCTAGATTTTTCCGAAGAACCTATAATCCCAGGATTCAAACAAGAAGATGATAAGACACTATTTTTTCAACTTTTTGCTCTGGTAAGTTTTTTAAAAGGCCCAAAAATTCAACATTTTTCTTATTTTCCAGAGATCTTGTGATCAGGATTTCAATCAACTTTTCTCAAATGTGAAAAAATTCGCAGAAGTTTTCAACTGTCCG</canonical>
            <polymorphic>CTTGTCCGATTCAAAAATTACAAAAATTTGGAGAACATCAAAGAAAAATTCTCATTGGATCCAGAAGATTCTATCCATTCAATTGCTCCATTTTACAACAGATCTCAAAATTCAATGTGTTAGTTTTTTTTTTACAAATTTTGAGTTTTTCGAAAATCAAAACCTTCTTCCAGACATCCTTGTTCCAATATTTGATTATCCAATTTTCGATCCAAACTATCCAAAATCTTCAAAACTTGCATCTACTGGATCCTTGATTGCACAGGCTATAGGAGGAAGTATTGATTTTATTGGACAAGATGGACACAACAAATGTCTAATAGATCAGCATAATCAAAATAAGTCTGGAAAATCGGTATGTTTTTGATTCGTAGGACTCAAAAGTAGGGTTTCCATTTGGGCGGGTGAAGAAGCGGGCTACCCGCAACCCACCCGGGGGGNNNNNNNNNNNAAAAGATATATTTTCCTCACGTAAATATTCGCGGGGGGTCAACGGGGGYCGCGGGGGGTGAGCCCCCCGGGTGGGTGCGGGCGGGTGAATCGCCCCCCAAATGGAAACCCTACTCAAAAGTTATGAATTCCATTCGGTCGGGAAATTTAGCCAACCGACCGACCGCCGACCCAGCCGAGCCGTCGGTCAGTCAGCGGTCGGTCAGAGGAGGTCAGCGGCCGATTTCCGACCGACCAAAATTCTAGAACCTTCAATTTTCATCTTTCCAGCAAAACCAGACACTCCCCATCGAGGCATTAATTTCTCAACAGCATGCCATTGAAGCCACGTGGCAAACTTTCAAAAATCTAGATTTTTCCGAAGAACCTATAATCCCAGGATTCAAACAAGAAGATGATAAGACACTATTTTTTCAACTTTTTGCTCTGGTAAGTTTTTTAAAAGGCCCAAAAATTCAACATTTTTCTTATTTTCCAGAGATCTTGTGATCAGGATTTCAATCAACTTTTCTCAAATGTGAAAAAATTCGCAGAAGTTTTCAACTGTCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAGTCTGGAAAATCGGTATGT</pcr_primer_p1>
		<pcr_primer_p2>CCGAATGGAATTCATAACTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAAGTCTGGAAAATCGGTATGTTTTTGATTCGTAGGACTCAAAAGTAGGGTTTCCATTTGGGCGGGTGAAGAAGCGGGCTACCCGCAACCCACCCGGGGGGNNNNNNNNNNNAAAAGATATATTTTCCTCACGTAAATATTCGCGGGGGGTCAACGGGGGTCGCGGGGGGTGAGCCCCCCGGGTGGGTGCGGGCGGGTGAATCGCCCCCCAAATGGAAACCCTACTCAAAAGTTATGAATTCCATTCGG</canonical_amplicon>
		<polymorphic_amplicon>ATAAGTCTGGAAAATCGGTATGTTTTTGATTCGTAGGACTCAAAAGTAGGGTTTCCATTTGGGCGGGTGAAGAAGCGGGCTACCCGCAACCCACCCGGGGGGNNNNNNNNNNNAAAAGATATATTTTCCTCACGTAAATATTCGCGGGGGGTCAACGGGGGYCGCGGGGGGTGAGCCCCCCGGGTGGGTGCGGGCGGGTGAATCGCCCCCCAAATGGAAACCCTACTCAAAAGTTATGAATTCCATTCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37410</snp_id>
        <super_contig>c012100907.Contig1</super_contig>
        <contig_pos>1473</contig_pos>
        <strand>+</strand>
        <context>GAGGAGGTCA[A/G]CGGCCGATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCGACCCAGCCGAGCCGTCGGTCAGTCAGCGGTCGGTCAGAGGAGGTCA</left_flank>
        <right_flank>CGGCCGATTTCCGACCGACCAAAATTCTAGAACCTTCAATTTTCATCTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCCAGACATCCTTGTTCCAATATTTGATTATCCAATTTTCGATCCAAACTATCCAAAATCTTCAAAACTTGCATCTACTGGATCCTTGATTGCACAGGCTATAGGAGGAAGTATTGATTTTATTGGACAAGATGGACACAACAAATGTCTAATAGATCAGCATAATCAAAATAAGTCTGGAAAATCGGTATGTTTTTGATTCGTAGGACTCAAAAGTAGGGTTTCCATTTGGGCGGGTGAAGAAGCGGGCTACCCGCAACCCACCCGGGGGGNNNNNNNNNNNAAAAGATATATTTTCCTCACGTAAATATTCGCGGGGGGTCAACGGGGGTCGCGGGGGGTGAGCCCCCCGGGTGGGTGCGGGCGGGTGAATCGCCCCCCAAATGGAAACCCTACTCAAAAGTTATGAATTCCATTCGGTCGGGAAATTTAGCCAACCGACCGACCGCCGACCCAGCCGAGCCGTCGGTCAGTCAGCGGTCGGTCAGAGGAGGTCAGCGGCCGATTTCCGACCGACCAAAATTCTAGAACCTTCAATTTTCATCTTTCCAGCAAAACCAGACACTCCCCATCGAGGCATTAATTTCTCAACAGCATGCCATTGAAGCCACGTGGCAAACTTTCAAAAATCTAGATTTTTCCGAAGAACCTATAATCCCAGGATTCAAACAAGAAGATGATAAGACACTATTTTTTCAACTTTTTGCTCTGGTAAGTTTTTTAAAAGGCCCAAAAATTCAACATTTTTCTTATTTTCCAGAGATCTTGTGATCAGGATTTCAATCAACTTTTCTCAAATGTGAAAAAATTCGCAGAAGTTTTCAACTGTCCGGCTGGTTCTCCAATGAATCCGGACATTAGATGTGAACTGTTTTAATTAGTTCTGTAATTATATAATTTTGTACAAAATTAGAAAAAATAAAAAAAGTTTATTACATATTTTTCGAGATTTTTTCATTCCTCATCGTAACGATTCTCAAAGAAAGTAGTCAGTTTAT</canonical>
            <polymorphic>CTTCCAGACATCCTTGTTCCAATATTTGATTATCCAATTTTCGATCCAAACTATCCAAAATCTTCAAAACTTGCATCTACTGGATCCTTGATTGCACAGGCTATAGGAGGAAGTATTGATTTTATTGGACAAGATGGACACAACAAATGTCTAATAGATCAGCATAATCAAAATAAGTCTGGAAAATCGGTATGTTTTTGATTCGTAGGACTCAAAAGTAGGGTTTCCATTTGGGCGGGTGAAGAAGCGGGCTACCCGCAACCCACCCGGGGGGNNNNNNNNNNNAAAAGATATATTTTCCTCACGTAAATATTCGCGGGGGGTCAACGGGGGTCGCGGGGGGTGAGCCCCCCGGGTGGGTGCGGGCGGGTGAATCGCCCCCCAAATGGAAACCCTACTCAAAAGTTATGAATTCCATTCGGTCGGGAAATTTAGCCAACCGACCGACCGCCGACCCAGCCGAGCCGTCGGTCAGTCAGCGGTCGGTCAGAGGAGGTCARCGGCCGATTTCCGACCGACCAAAATTCTAGAACCTTCAATTTTCATCTTTCCAGCAAAACCAGACACTCCCCATCGAGGCATTAATTTCTCAACAGCATGCCATTGAAGCCACGTGGCAAACTTTCAAAAATCTAGATTTTTCCGAAGAACCTATAATCCCAGGATTCAAACAAGAAGATGATAAGACACTATTTTTTCAACTTTTTGCTCTGGTAAGTTTTTTAAAAGGCCCAAAAATTCAACATTTTTCTTATTTTCCAGAGATCTTGTGATCAGGATTTCAATCAACTTTTCTCAAATGTGAAAAAATTCGCAGAAGTTTTCAACTGTCCGGCTGGTTCTCCAATGAATCCGGACATTAGATGTGAACTGTTTTAATTAGTTCTGTAATTATATAATTTTGTACAAAATTAGAAAAAATAAAAAAAGTTTATTACATATTTTTCGAGATTTTTTCATTCCTCATCGTAACGATTCTCAAAGAAAGTAGTCAGTTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>500 479 21</canonical_bands>
                <polymorphic_bands>521 479</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGTATGTTTTTGATTCGTAG</pcr_primer_p1>
		<pcr_primer_p2>GGAAAGATGAAAATTGAAGGT</pcr_primer_p2>
		<pcr_amplicon_size>365</pcr_amplicon_size>
		<canonical_amplicon>CGGTATGTTTTTGATTCGTAGGACTCAAAAGTAGGGTTTCCATTTGGGCGGGTGAAGAAGCGGGCTACCCGCAACCCACCCGGGGGGNNNNNNNNNNNAAAAGATATATTTTCCTCACGTAAATATTCGCGGGGGGTCAACGGGGGTCGCGGGGGGTGAGCCCCCCGGGTGGGTGCGGGCGGGTGAATCGCCCCCCAAATGGAAACCCTACTCAAAAGTTATGAATTCCATTCGGTCGGGAAATTTAGCCAACCGACCGACCGCCGACCCAGCCGAGCCGTCGGTCAGTCAGCGGTCGGTCAGAGGAGGTCAGCGGCCGATTTCCGACCGACCAAAATTCTAGAACCTTCAATTTTCATCTTTCC</canonical_amplicon>
		<polymorphic_amplicon>CGGTATGTTTTTGATTCGTAGGACTCAAAAGTAGGGTTTCCATTTGGGCGGGTGAAGAAGCGGGCTACCCGCAACCCACCCGGGGGGNNNNNNNNNNNAAAAGATATATTTTCCTCACGTAAATATTCGCGGGGGGTCAACGGGGGTCGCGGGGGGTGAGCCCCCCGGGTGGGTGCGGGCGGGTGAATCGCCCCCCAAATGGAAACCCTACTCAAAAGTTATGAATTCCATTCGGTCGGGAAATTTAGCCAACCGACCGACCGCCGACCCAGCCGAGCCGTCGGTCAGTCAGCGGTCGGTCAGAGGAGGTCARCGGCCGATTTCCGACCGACCAAAATTCTAGAACCTTCAATTTTCATCTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37411</snp_id>
        <super_contig>c012100907.Contig1</super_contig>
        <contig_pos>3498</contig_pos>
        <strand></strand>
        <context>tctgagattc[T/C]gagattctga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCCGAGATTCTGAGATTCTGAGATTCTGCGATTCTGAGATTCTGAGATTC</left_flank>
        <right_flank>GAGATTCTGAGATTCTGATATTCTGAGATTCTGAGATTCTGAGATTCTGA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGAGGCTTATCAAGGAATGGGACAAGGACACCTAGAATTTTAGACTATTTTAGGGCATTTTTAATATTTTGGACATTCGGACATTTGAACAAAAACATTTTAATTTTAATTTTGACATTTTAGAAACTCACTCAATAAATTTTTTGAATGAAAATAGTAAGCGTTTGCCGTTGTCGTTTTTTCGACAGGATTGAAAAGTGAATCAGATGACACCTAGTCCATCAATTGCTCCGTTTTGAATCGATTGATTTTGGTCATCAGGGTAAAGAAAGAGTCTTCTGGAGAGAGATGAAGCTGAAAATTGTTTTTAACAAGTGCCGAATTTCAGATTTTCGGGAGTTTACGGGAAATTAGAATTTTAGGACTTTTTAAAAATAGTTATTTTGCAAAAGTCATATACTTCGAAAATTGGAACATTGTGGAAGGGTCATTCCGAGATTCTGAGATTCCGAGATTCTGAGATTCTGAGATTCTGCGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGATATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGTCGCGAATTCAGGTGTCTGAAGAACACCTCTTCACGACTTTTACCCTTTTCTGAATGAATTCTCTTCCTTTTCCCTTCAGTTACATATTTTATTCACCAATACCGACGCCGCCCAACAACGATGCTTTTGAATTGCCGCCGACGGACTACTGTACCTGCTGATCTAACTCGGTCTCGCCGCGCACCAAGGAAACGCGCCTGACTTTGGGAGGATTGGAGCGCCCGGTTTTTAGGACCTCCCGGATCGTGATTAGTTTTTTGCTCCGTCTGAGATTTTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTAAAATTCTAAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGATATT</canonical>
            <polymorphic>AAAGAGGCTTATCAAGGAATGGGACAAGGACACCTAGAATTTTAGACTATTTTAGGGCATTTTTAATATTTTGGACATTCGGACATTTGAACAAAAACATTTTAATTTTAATTTTGACATTTTAGAAACTCACTCAATAAATTTTTTGAATGAAAATAGTAAGCGTTTGCCGTTGTCGTTTTTTCGACAGGATTGAAAAGTGAATCAGATGACACCTAGTCCATCAATTGCTCCGTTTTGAATCGATTGATTTTGGTCATCAGGGTAAAGAAAGAGTCTTCTGGAGAGAGATGAAGCTGAAAATTGTTTTTAACAAGTGCCGAATTTCAGATTTTCGGGAGTTTACGGGAAATTAGAATTTTAGGACTTTTTAAAAATAGTTATTTTGCAAAAGTCATATACTTCGAAAATTGGAACATTGTGGAAGGGTCATTCCGAGATTCTGAGATTCCGAGATTCTGAGATTCTGAGATTCTGCGATTCTGAGATTCYGAGATTCTGAGATTCTGAGATTCTGATATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGTCGCGAATTCAGGTGTCTGAAGAACACCTCTTCACGACTTTTACCCTTTTCTGAATGAATTCTCTTCCTTTTCCCTTCAGTTACATATTTTATTCACCAATACCGACGCCGCCCAACAACGATGCTTTTGAATTGCCGCCGACGGACTACTGTACCTGCTGATCTAACTCGGTCTCGCCGCGCACCAAGGAAACGCGCCTGACTTTGGGAGGATTGGAGCGCCCGGTTTTTAGGACCTCCCGGATCGTGATTAGTTTTTTGCTCCGTCTGAGATTTTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTAAAATTCTAAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGATATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>443 278 16 16 16 16 16 16 16 15 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>443 278 16 16 16 16 16 16 16 16 15 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATACTTCGAAAATTGGAACATT</pcr_primer_p1>
		<pcr_primer_p2>GTAAAAGTCGTGAAGAGGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATACTTCGAAAATTGGAACATTGTGGAAGGGTCATTCCGAGATTCTGAGATTCCGAGATTCTGAGATTCTGAGATTCTGCGATTCTGAGATTCYGAGATTCTGAGATTCTGAGATTCTGATATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGTCGCGAATTCAGGTGTCTGAAGAACACCTCTTCACGACTTTTAC</canonical_amplicon>
		<polymorphic_amplicon>TATACTTCGAAAATTGGAACATTGTGGAAGGGTCATTCCGAGATTCTGAGATTCCGAGATTCTGAGATTCTGAGATTCTGCGATTCTGAGATTCYGAGATTCTGAGATTCTGAGATTCTGATATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGTCGCGAATTCAGGTGTCTGAAGAACACCTCTTCACGACTTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37412</snp_id>
        <super_contig>c012100907.Contig1</super_contig>
        <contig_pos>3517</contig_pos>
        <strand></strand>
        <context>gagattctga[T/G]attctgmgat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GAGATTCTGCGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGA</left_flank>
        <right_flank>ATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGACAAGGACACCTAGAATTTTAGACTATTTTAGGGCATTTTTAATATTTTGGACATTCGGACATTTGAACAAAAACATTTTAATTTTAATTTTGACATTTTAGAAACTCACTCAATAAATTTTTTGAATGAAAATAGTAAGCGTTTGCCGTTGTCGTTTTTTCGACAGGATTGAAAAGTGAATCAGATGACACCTAGTCCATCAATTGCTCCGTTTTGAATCGATTGATTTTGGTCATCAGGGTAAAGAAAGAGTCTTCTGGAGAGAGATGAAGCTGAAAATTGTTTTTAACAAGTGCCGAATTTCAGATTTTCGGGAGTTTACGGGAAATTAGAATTTTAGGACTTTTTAAAAATAGTTATTTTGCAAAAGTCATATACTTCGAAAATTGGAACATTGTGGAAGGGTCATTCCGAGATTCTGAGATTCCGAGATTCTGAGATTCTGAGATTCTGCGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGATATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGTCGCGAATTCAGGTGTCTGAAGAACACCTCTTCACGACTTTTACCCTTTTCTGAATGAATTCTCTTCCTTTTCCCTTCAGTTACATATTTTATTCACCAATACCGACGCCGCCCAACAACGATGCTTTTGAATTGCCGCCGACGGACTACTGTACCTGCTGATCTAACTCGGTCTCGCCGCGCACCAAGGAAACGCGCCTGACTTTGGGAGGATTGGAGCGCCCGGTTTTTAGGACCTCCCGGATCGTGATTAGTTTTTTGCTCCGTCTGAGATTTTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTAAAATTCTAAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGATATTTTAAGATTCTGAGATTCTG</canonical>
            <polymorphic>TGGGACAAGGACACCTAGAATTTTAGACTATTTTAGGGCATTTTTAATATTTTGGACATTCGGACATTTGAACAAAAACATTTTAATTTTAATTTTGACATTTTAGAAACTCACTCAATAAATTTTTTGAATGAAAATAGTAAGCGTTTGCCGTTGTCGTTTTTTCGACAGGATTGAAAAGTGAATCAGATGACACCTAGTCCATCAATTGCTCCGTTTTGAATCGATTGATTTTGGTCATCAGGGTAAAGAAAGAGTCTTCTGGAGAGAGATGAAGCTGAAAATTGTTTTTAACAAGTGCCGAATTTCAGATTTTCGGGAGTTTACGGGAAATTAGAATTTTAGGACTTTTTAAAAATAGTTATTTTGCAAAAGTCATATACTTCGAAAATTGGAACATTGTGGAAGGGTCATTCCGAGATTCTGAGATTCCGAGATTCTGAGATTCTGAGATTCTGCGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAKATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGTCGCGAATTCAGGTGTCTGAAGAACACCTCTTCACGACTTTTACCCTTTTCTGAATGAATTCTCTTCCTTTTCCCTTCAGTTACATATTTTATTCACCAATACCGACGCCGCCCAACAACGATGCTTTTGAATTGCCGCCGACGGACTACTGTACCTGCTGATCTAACTCGGTCTCGCCGCGCACCAAGGAAACGCGCCTGACTTTGGGAGGATTGGAGCGCCCGGTTTTTAGGACCTCCCGGATCGTGATTAGTTTTTTGCTCCGTCTGAGATTTTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTAAAATTCTAAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGATATTTTAAGATTCTGAGATTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATACTTCGAAAATTGGAACATT</pcr_primer_p1>
		<pcr_primer_p2>GTAAAAGTCGTGAAGAGGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATACTTCGAAAATTGGAACATTGTGGAAGGGTCATTCCGAGATTCTGAGATTCCGAGATTCTGAGATTCTGAGATTCTGCGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGATATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGTCGCGAATTCAGGTGTCTGAAGAACACCTCTTCACGACTTTTAC</canonical_amplicon>
		<polymorphic_amplicon>TATACTTCGAAAATTGGAACATTGTGGAAGGGTCATTCCGAGATTCTGAGATTCCGAGATTCTGAGATTCTGAGATTCTGCGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAKATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGTCGCGAATTCAGGTGTCTGAAGAACACCTCTTCACGACTTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37413</snp_id>
        <super_contig>c012100907.Contig1</super_contig>
        <contig_pos>3524</contig_pos>
        <strand></strand>
        <context>tgakattctg[A/C]gattctgaga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGATATTCTG</left_flank>
        <right_flank>GATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGACACCTAGAATTTTAGACTATTTTAGGGCATTTTTAATATTTTGGACATTCGGACATTTGAACAAAAACATTTTAATTTTAATTTTGACATTTTAGAAACTCACTCAATAAATTTTTTGAATGAAAATAGTAAGCGTTTGCCGTTGTCGTTTTTTCGACAGGATTGAAAAGTGAATCAGATGACACCTAGTCCATCAATTGCTCCGTTTTGAATCGATTGATTTTGGTCATCAGGGTAAAGAAAGAGTCTTCTGGAGAGAGATGAAGCTGAAAATTGTTTTTAACAAGTGCCGAATTTCAGATTTTCGGGAGTTTACGGGAAATTAGAATTTTAGGACTTTTTAAAAATAGTTATTTTGCAAAAGTCATATACTTCGAAAATTGGAACATTGTGGAAGGGTCATTCCGAGATTCTGAGATTCCGAGATTCTGAGATTCTGAGATTCTGCGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGATATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGTCGCGAATTCAGGTGTCTGAAGAACACCTCTTCACGACTTTTACCCTTTTCTGAATGAATTCTCTTCCTTTTCCCTTCAGTTACATATTTTATTCACCAATACCGACGCCGCCCAACAACGATGCTTTTGAATTGCCGCCGACGGACTACTGTACCTGCTGATCTAACTCGGTCTCGCCGCGCACCAAGGAAACGCGCCTGACTTTGGGAGGATTGGAGCGCCCGGTTTTTAGGACCTCCCGGATCGTGATTAGTTTTTTGCTCCGTCTGAGATTTTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTAAAATTCTAAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGATATTTTAAGATTCTGAGATTCTGAAATTCT</canonical>
            <polymorphic>AGGACACCTAGAATTTTAGACTATTTTAGGGCATTTTTAATATTTTGGACATTCGGACATTTGAACAAAAACATTTTAATTTTAATTTTGACATTTTAGAAACTCACTCAATAAATTTTTTGAATGAAAATAGTAAGCGTTTGCCGTTGTCGTTTTTTCGACAGGATTGAAAAGTGAATCAGATGACACCTAGTCCATCAATTGCTCCGTTTTGAATCGATTGATTTTGGTCATCAGGGTAAAGAAAGAGTCTTCTGGAGAGAGATGAAGCTGAAAATTGTTTTTAACAAGTGCCGAATTTCAGATTTTCGGGAGTTTACGGGAAATTAGAATTTTAGGACTTTTTAAAAATAGTTATTTTGCAAAAGTCATATACTTCGAAAATTGGAACATTGTGGAAGGGTCATTCCGAGATTCTGAGATTCCGAGATTCTGAGATTCTGAGATTCTGCGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGATATTCTGMGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGTCGCGAATTCAGGTGTCTGAAGAACACCTCTTCACGACTTTTACCCTTTTCTGAATGAATTCTCTTCCTTTTCCCTTCAGTTACATATTTTATTCACCAATACCGACGCCGCCCAACAACGATGCTTTTGAATTGCCGCCGACGGACTACTGTACCTGCTGATCTAACTCGGTCTCGCCGCGCACCAAGGAAACGCGCCTGACTTTGGGAGGATTGGAGCGCCCGGTTTTTAGGACCTCCCGGATCGTGATTAGTTTTTTGCTCCGTCTGAGATTTTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTAAAATTCTAAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGATATTTTAAGATTCTGAGATTCTGAAATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>417 278 24 17 16 16 16 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>417 278 24 24 17 16 16 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>217 126 122 107 55 34 27 24 16 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>217 126 122 107 55 34 27 24 16 16 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATACTTCGAAAATTGGAACATT</pcr_primer_p1>
		<pcr_primer_p2>GTAAAAGTCGTGAAGAGGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATACTTCGAAAATTGGAACATTGTGGAAGGGTCATTCCGAGATTCTGAGATTCCGAGATTCTGAGATTCTGAGATTCTGCGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGATATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGTCGCGAATTCAGGTGTCTGAAGAACACCTCTTCACGACTTTTAC</canonical_amplicon>
		<polymorphic_amplicon>TATACTTCGAAAATTGGAACATTGTGGAAGGGTCATTCCGAGATTCTGAGATTCCGAGATTCTGAGATTCTGAGATTCTGCGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGATATTCTGMGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGTCGCGAATTCAGGTGTCTGAAGAACACCTCTTCACGACTTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37414</snp_id>
        <super_contig>c012100907.Contig1</super_contig>
        <contig_pos>3580</contig_pos>
        <strand></strand>
        <context>tgagattctg[A/C]gattctgaga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTG</left_flank>
        <right_flank>GATTCTGAGATTCTGAGATTCTGTCGCGAATTCAGGTGTCTGAAGAACAC</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATTTGAACAAAAACATTTTAATTTTAATTTTGACATTTTAGAAACTCACTCAATAAATTTTTTGAATGAAAATAGTAAGCGTTTGCCGTTGTCGTTTTTTCGACAGGATTGAAAAGTGAATCAGATGACACCTAGTCCATCAATTGCTCCGTTTTGAATCGATTGATTTTGGTCATCAGGGTAAAGAAAGAGTCTTCTGGAGAGAGATGAAGCTGAAAATTGTTTTTAACAAGTGCCGAATTTCAGATTTTCGGGAGTTTACGGGAAATTAGAATTTTAGGACTTTTTAAAAATAGTTATTTTGCAAAAGTCATATACTTCGAAAATTGGAACATTGTGGAAGGGTCATTCCGAGATTCTGAGATTCCGAGATTCTGAGATTCTGAGATTCTGCGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGATATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGTCGCGAATTCAGGTGTCTGAAGAACACCTCTTCACGACTTTTACCCTTTTCTGAATGAATTCTCTTCCTTTTCCCTTCAGTTACATATTTTATTCACCAATACCGACGCCGCCCAACAACGATGCTTTTGAATTGCCGCCGACGGACTACTGTACCTGCTGATCTAACTCGGTCTCGCCGCGCACCAAGGAAACGCGCCTGACTTTGGGAGGATTGGAGCGCCCGGTTTTTAGGACCTCCCGGATCGTGATTAGTTTTTTGCTCCGTCTGAGATTTTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTAAAATTCTAAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGATATTTTAAGATTCTGAGATTCTGAAATTCTGAGATTCTAAGATTCTGAGATTCTAAGATTCTGAGATTCTGAGATTCTGAGATTCT</canonical>
            <polymorphic>ACATTTGAACAAAAACATTTTAATTTTAATTTTGACATTTTAGAAACTCACTCAATAAATTTTTTGAATGAAAATAGTAAGCGTTTGCCGTTGTCGTTTTTTCGACAGGATTGAAAAGTGAATCAGATGACACCTAGTCCATCAATTGCTCCGTTTTGAATCGATTGATTTTGGTCATCAGGGTAAAGAAAGAGTCTTCTGGAGAGAGATGAAGCTGAAAATTGTTTTTAACAAGTGCCGAATTTCAGATTTTCGGGAGTTTACGGGAAATTAGAATTTTAGGACTTTTTAAAAATAGTTATTTTGCAAAAGTCATATACTTCGAAAATTGGAACATTGTGGAAGGGTCATTCCGAGATTCTGAGATTCCGAGATTCTGAGATTCTGAGATTCTGCGATTCTGAGATTCTGMGATTCTGAGATTCTGAGATTCTGATATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGTCGCGAATTCAGGTGTCTGAAGAACACCTCTTCACGACTTTTACCCTTTTCTGAATGAATTCTCTTCCTTTTCCCTTCAGTTACATATTTTATTCACCAATACCGACGCCGCCCAACAACGATGCTTTTGAATTGCCGCCGACGGACTACTGTACCTGCTGATCTAACTCGGTCTCGCCGCGCACCAAGGAAACGCGCCTGACTTTGGGAGGATTGGAGCGCCCGGTTTTTAGGACCTCCCGGATCGTGATTAGTTTTTTGCTCCGTCTGAGATTTTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTAAAATTCTAAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGATATTTTAAGATTCTGAGATTCTGAAATTCTGAGATTCTAAGATTCTGAGATTCTAAGATTCTGAGATTCTGAGATTCTGAGATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>361 278 24 16 16 16 16 16 16 16 16 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>361 278 24 16 16 16 16 16 16 16 16 16 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>217 125 122 107 34 27 24 16 16 16 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>217 125 122 107 34 27 24 16 16 16 16 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATACTTCGAAAATTGGAACATT</pcr_primer_p1>
		<pcr_primer_p2>GTAAAAGTCGTGAAGAGGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATACTTCGAAAATTGGAACATTGTGGAAGGGTCATTCCGAGATTCTGAGATTCCGAGATTCTGAGATTCTGAGATTCTGCGATTCTGAGATTCTGMGATTCTGAGATTCTGAGATTCTGATATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGTCGCGAATTCAGGTGTCTGAAGAACACCTCTTCACGACTTTTAC</canonical_amplicon>
		<polymorphic_amplicon>TATACTTCGAAAATTGGAACATTGTGGAAGGGTCATTCCGAGATTCTGAGATTCCGAGATTCTGAGATTCTGAGATTCTGCGATTCTGAGATTCTGMGATTCTGAGATTCTGAGATTCTGATATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGTCGCGAATTCAGGTGTCTGAAGAACACCTCTTCACGACTTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37416</snp_id>
        <super_contig>c012101062.Contig1</super_contig>
        <contig_pos>33707</contig_pos>
        <strand>+</strand>
        <context>AATTGAAGGA[A/G]ATATCAAARG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGATAAGAGCGGTGCAGGATGCTAGGGAGCAGGTTCTCGAATTGAAGGA</left_flank>
        <right_flank>ATATCAAAGGAGGAAGAGGAAGATGAAGGAACGCTGAAGAGAGAGGCAGA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTAGAATCCTATTTCTTCTATGAAAAGAGACAGATTCTGAGTACCCGAGTGTATTCTCAACAGCTAGTCCAACAGTGTTACGATCGACGGAATTTCATAATGGAGCAGATTTTCAAATCCCCGGATAAAATACAAAAATGCAAATTAAAGCTTGCTATGGATTTGGCTGCATCTCTCAATCAACTTCGTCTCGATTACCAACGTCTTCAGAATACAATTTCTGAATGTGTGGATCTTCTGGAGAAGCCGTTCCAAGAGATGAAGGACGTGGTGAATCGATGTCTTCAGAATCAAGGGCAGACTAGGAATTCAATGGAGAAATCCATGCACTTTTTGGCGCCAGAAAATCAGTTGAGAATGAAACGAACGACGAAGTCTTGTAAGAAGTTGATAGACGAATTGAATCAGGAAATTGAGCAGTTGGGATTTGTGAGAATGGGTGATACGTTGATAAGAGCGGTGCAGGATGCTAGGGAGCAGGTTCTCGAATTGAAGGAAATATCAAAGGAGGAAGAGGAAGATGAAGGAACGCTGAAGAGAGAGGCAGAGACGCAGGAAGTGAGTTGATAAGAGACTAGTGATAAAACTGATAATCAGATTATAATCGGATTTTCCTATTAAAAATTATAATTTTGTCAAAGTTTGATGATTTTTTTAGTCAACTTGTGACCTAGTATTTTTGTAGTCTAGATTACTCGGTCGTTTTCCAGTCAAAAATAATTCGGTTCACCTTTTCAACCAGTTGAACTGATTTTTGTACATTTTAATTATCAAATTCGTATTTCTCACACTTGAGTTAGACTGAATTCCAATTTTCAGGCCGAATTTCGATATTCGGTGTTTGCGTACTTTTGGAGCTGCAGTAACCCGAAAATTTTCAAAAATCAAGCTAGAAAAATCTAGTTTTTTTCAGCTAGACTCAAATTTTTTTAAGAAACACGAATTTGTCAATATCAGATTACTGTATGCACCTTTAAACTGAAAATTTATGAATTCCA</canonical>
            <polymorphic>AATTAGAATCCTATTTCTTCTATGAAAAGAGACAGATTCTGAGTACCCGAGTGTATTCTCAACAGCTAGTCCAACAGTGTTACGATCGACGGAATTTCATAATGGAGCAGATTTTCAAATCCCCGGATAAAATACAAAAATGCAAATTAAAGCTTGCTATGGATTTGGCTGCATCTCTCAATCAACTTCGTCTCGATTACCAACGTCTTCAGAATACAATTTCTGAATGTGTGGATCTTCTGGAGAAGCCGTTCCAAGAGATGAAGGACGTGGTGAATCGATGTCTTCAGAATCAAGGGCAGACTAGGAATTCAATGGAGAAATCCATGCACTTTTTGGCGCCAGAAAATCAGTTGAGAATGAAACGAACGACGAAGTCTTGTAAGAAGTTGATAGACGAATTGAATCAGGAAATTGAGCAGTTGGGATTTGTGAGAATGGGTGATACGTTGATAAGAGCGGTGCAGGATGCTAGGGAGCAGGTTCTCGAATTGAAGGARATATCAAAGGAGGAAGAGGAAGATGAAGGAACGCTGAAGAGAGAGGCAGAGACGCAGGAAGTGAGTTGATAAGAGACTAGTGATAAAACTGATAATCAGATTATAATCGGATTTTCCTATTAAAAATTATAATTTTGTCAAAGTTTGATGATTTTTTTAGTCAACTTGTGACCTAGTATTTTTGTAGTCTAGATTACTCGGTCGTTTTCCAGTCAAAAATAATTCGGTTCACCTTTTCAACCAGTTGAACTGATTTTTGTACATTTTAATTATCAAATTCGTATTTCTCACACTTGAGTTAGACTGAATTCCAATTTTCAGGCCGAATTTCGATATTCGGTGTTTGCGTACTTTTGGAGCTGCAGTAACCCGAAAATTTTCAAAAATCAAGCTAGAAAAATCTAGTTTTTTTCAGCTAGACTCAAATTTTTTTAAGAAACACGAATTTGTCAATATCAGATTACTGTATGCACCTTTAAACTGAAAATTTATGAATTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAATGGGTGATACGTTGATAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAAATACTAGGTCACAAGTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAATGGGTGATACGTTGATAAGAGCGGTGCAGGATGCTAGGGAGCAGGTTCTCGAATTGAAGGAAATATCAAAGGAGGAAGAGGAAGATGAAGGAACGCTGAAGAGAGAGGCAGAGACGCAGGAAGTGAGTTGATAAGAGACTAGTGATAAAACTGATAATCAGATTATAATCGGATTTTCCTATTAAAAATTATAATTTTGTCAAAGTTTGATGATTTTTTTAGTCAACTTGTGACCTAGTATTTTTG</canonical_amplicon>
		<polymorphic_amplicon>AGAATGGGTGATACGTTGATAAGAGCGGTGCAGGATGCTAGGGAGCAGGTTCTCGAATTGAAGGARATATCAAAGGAGGAAGAGGAAGATGAAGGAACGCTGAAGAGAGAGGCAGAGACGCAGGAAGTGAGTTGATAAGAGACTAGTGATAAAACTGATAATCAGATTATAATCGGATTTTCCTATTAAAAATTATAATTTTGTCAAAGTTTGATGATTTTTTTAGTCAACTTGTGACCTAGTATTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37417</snp_id>
        <super_contig>c012101062.Contig1</super_contig>
        <contig_pos>33716</contig_pos>
        <strand>+</strand>
        <context>ARATATCAAA[A/G]GAGGAAGAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCGGTGCAGGATGCTAGGGAGCAGGTTCTCGAATTGAAGGAAATATCAAA</left_flank>
        <right_flank>GAGGAAGAGGAAGATGAAGGAACGCTGAAGAGAGAGGCAGAGACGCAGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTATTTCTTCTATGAAAAGAGACAGATTCTGAGTACCCGAGTGTATTCTCAACAGCTAGTCCAACAGTGTTACGATCGACGGAATTTCATAATGGAGCAGATTTTCAAATCCCCGGATAAAATACAAAAATGCAAATTAAAGCTTGCTATGGATTTGGCTGCATCTCTCAATCAACTTCGTCTCGATTACCAACGTCTTCAGAATACAATTTCTGAATGTGTGGATCTTCTGGAGAAGCCGTTCCAAGAGATGAAGGACGTGGTGAATCGATGTCTTCAGAATCAAGGGCAGACTAGGAATTCAATGGAGAAATCCATGCACTTTTTGGCGCCAGAAAATCAGTTGAGAATGAAACGAACGACGAAGTCTTGTAAGAAGTTGATAGACGAATTGAATCAGGAAATTGAGCAGTTGGGATTTGTGAGAATGGGTGATACGTTGATAAGAGCGGTGCAGGATGCTAGGGAGCAGGTTCTCGAATTGAAGGAAATATCAAAGGAGGAAGAGGAAGATGAAGGAACGCTGAAGAGAGAGGCAGAGACGCAGGAAGTGAGTTGATAAGAGACTAGTGATAAAACTGATAATCAGATTATAATCGGATTTTCCTATTAAAAATTATAATTTTGTCAAAGTTTGATGATTTTTTTAGTCAACTTGTGACCTAGTATTTTTGTAGTCTAGATTACTCGGTCGTTTTCCAGTCAAAAATAATTCGGTTCACCTTTTCAACCAGTTGAACTGATTTTTGTACATTTTAATTATCAAATTCGTATTTCTCACACTTGAGTTAGACTGAATTCCAATTTTCAGGCCGAATTTCGATATTCGGTGTTTGCGTACTTTTGGAGCTGCAGTAACCCGAAAATTTTCAAAAATCAAGCTAGAAAAATCTAGTTTTTTTCAGCTAGACTCAAATTTTTTTAAGAAACACGAATTTGTCAATATCAGATTACTGTATGCACCTTTAAACTGAAAATTTATGAATTCCATGTCTCCCA</canonical>
            <polymorphic>CCTATTTCTTCTATGAAAAGAGACAGATTCTGAGTACCCGAGTGTATTCTCAACAGCTAGTCCAACAGTGTTACGATCGACGGAATTTCATAATGGAGCAGATTTTCAAATCCCCGGATAAAATACAAAAATGCAAATTAAAGCTTGCTATGGATTTGGCTGCATCTCTCAATCAACTTCGTCTCGATTACCAACGTCTTCAGAATACAATTTCTGAATGTGTGGATCTTCTGGAGAAGCCGTTCCAAGAGATGAAGGACGTGGTGAATCGATGTCTTCAGAATCAAGGGCAGACTAGGAATTCAATGGAGAAATCCATGCACTTTTTGGCGCCAGAAAATCAGTTGAGAATGAAACGAACGACGAAGTCTTGTAAGAAGTTGATAGACGAATTGAATCAGGAAATTGAGCAGTTGGGATTTGTGAGAATGGGTGATACGTTGATAAGAGCGGTGCAGGATGCTAGGGAGCAGGTTCTCGAATTGAAGGAAATATCAAARGAGGAAGAGGAAGATGAAGGAACGCTGAAGAGAGAGGCAGAGACGCAGGAAGTGAGTTGATAAGAGACTAGTGATAAAACTGATAATCAGATTATAATCGGATTTTCCTATTAAAAATTATAATTTTGTCAAAGTTTGATGATTTTTTTAGTCAACTTGTGACCTAGTATTTTTGTAGTCTAGATTACTCGGTCGTTTTCCAGTCAAAAATAATTCGGTTCACCTTTTCAACCAGTTGAACTGATTTTTGTACATTTTAATTATCAAATTCGTATTTCTCACACTTGAGTTAGACTGAATTCCAATTTTCAGGCCGAATTTCGATATTCGGTGTTTGCGTACTTTTGGAGCTGCAGTAACCCGAAAATTTTCAAAAATCAAGCTAGAAAAATCTAGTTTTTTTCAGCTAGACTCAAATTTTTTTAAGAAACACGAATTTGTCAATATCAGATTACTGTATGCACCTTTAAACTGAAAATTTATGAATTCCATGTCTCCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAATGGGTGATACGTTGATAA</pcr_primer_p1>
		<pcr_primer_p2>CAAAAATACTAGGTCACAAGTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAATGGGTGATACGTTGATAAGAGCGGTGCAGGATGCTAGGGAGCAGGTTCTCGAATTGAAGGAAATATCAAAGGAGGAAGAGGAAGATGAAGGAACGCTGAAGAGAGAGGCAGAGACGCAGGAAGTGAGTTGATAAGAGACTAGTGATAAAACTGATAATCAGATTATAATCGGATTTTCCTATTAAAAATTATAATTTTGTCAAAGTTTGATGATTTTTTTAGTCAACTTGTGACCTAGTATTTTTG</canonical_amplicon>
		<polymorphic_amplicon>AGAATGGGTGATACGTTGATAAGAGCGGTGCAGGATGCTAGGGAGCAGGTTCTCGAATTGAAGGAAATATCAAARGAGGAAGAGGAAGATGAAGGAACGCTGAAGAGAGAGGCAGAGACGCAGGAAGTGAGTTGATAAGAGACTAGTGATAAAACTGATAATCAGATTATAATCGGATTTTCCTATTAAAAATTATAATTTTGTCAAAGTTTGATGATTTTTTTAGTCAACTTGTGACCTAGTATTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37418</snp_id>
        <super_contig>c012101062.Contig1</super_contig>
        <contig_pos>34028</contig_pos>
        <strand></strand>
        <context>ccaattttca[G/T]gccgaatttc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATCAAATTCGTATTTCTCACACTTGAGTTAGACTGAATTCCAATTTTCA</left_flank>
        <right_flank>GCCGAATTTCGATATTCGGTGTTTGCGTACTTTTGGAGCTGCAGTAACCC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCCATGCACTTTTTGGCGCCAGAAAATCAGTTGAGAATGAAACGAACGACGAAGTCTTGTAAGAAGTTGATAGACGAATTGAATCAGGAAATTGAGCAGTTGGGATTTGTGAGAATGGGTGATACGTTGATAAGAGCGGTGCAGGATGCTAGGGAGCAGGTTCTCGAATTGAAGGAAATATCAAAGGAGGAAGAGGAAGATGAAGGAACGCTGAAGAGAGAGGCAGAGACGCAGGAAGTGAGTTGATAAGAGACTAGTGATAAAACTGATAATCAGATTATAATCGGATTTTCCTATTAAAAATTATAATTTTGTCAAAGTTTGATGATTTTTTTAGTCAACTTGTGACCTAGTATTTTTGTAGTCTAGATTACTCGGTCGTTTTCCAGTCAAAAATAATTCGGTTCACCTTTTCAACCAGTTGAACTGATTTTTGTACATTTTAATTATCAAATTCGTATTTCTCACACTTGAGTTAGACTGAATTCCAATTTTCAGGCCGAATTTCGATATTCGGTGTTTGCGTACTTTTGGAGCTGCAGTAACCCGAAAATTTTCAAAAATCAAGCTAGAAAAATCTAGTTTTTTTCAGCTAGACTCAAATTTTTTTAAGAAACACGAATTTGTCAATATCAGATTACTGTATGCACCTTTAAACTGAAAATTTATGAATTCCATGTCTCCCACCTTTTCCGTTTTTTTTCTCTATCTCACATTTTCAATTTTTCTAACAGATCTCGATTCTCAAACGATCACCTGAAGCATGTCCATCGGAGCACGACGTCGCCAACGTGTATGTCCTTTTCAACTTTTTTTCTGTTTAGAAATTTCTAGAAGCTTCTAAAAAAGTGCATGTTGTCCCTGTTAGTTTAAAAATCATTTGTGTGCAAATGCGCTCTATTGAACTATAGAAAATTGCATGCCTTTTTGTTCCTGTTGTGTGTATCCCTCAATGCTTAATTTGAAAATTAGTAATGTGCAATTGCGCTCTAGTGAGC</canonical>
            <polymorphic>AATCCATGCACTTTTTGGCGCCAGAAAATCAGTTGAGAATGAAACGAACGACGAAGTCTTGTAAGAAGTTGATAGACGAATTGAATCAGGAAATTGAGCAGTTGGGATTTGTGAGAATGGGTGATACGTTGATAAGAGCGGTGCAGGATGCTAGGGAGCAGGTTCTCGAATTGAAGGAAATATCAAAGGAGGAAGAGGAAGATGAAGGAACGCTGAAGAGAGAGGCAGAGACGCAGGAAGTGAGTTGATAAGAGACTAGTGATAAAACTGATAATCAGATTATAATCGGATTTTCCTATTAAAAATTATAATTTTGTCAAAGTTTGATGATTTTTTTAGTCAACTTGTGACCTAGTATTTTTGTAGTCTAGATTACTCGGTCGTTTTCCAGTCAAAAATAATTCGGTTCACCTTTTCAACCAGTTGAACTGATTTTTGTACATTTTAATTATCAAATTCGTATTTCTCACACTTGAGTTAGACTGAATTCCAATTTTCAKGCCGAATTTCGATATTCGGTGTTTGCGTACTTTTGGAGCTGCAGTAACCCGAAAATTTTCAAAAATCAAGCTAGAAAAATCTAGTTTTTTTCAGCTAGACTCAAATTTTTTTAAGAAACACGAATTTGTCAATATCAGATTACTGTATGCACCTTTAAACTGAAAATTTATGAATTCCATGTCTCCCACCTTTTCCGTTTTTTTTCTCTATCTCACATTTTCAATTTTTCTAACAGATCTCGATTCTCAAACGATCACCTGAAGCATGTCCATCGGAGCACGACGTCGCCAACGTGTATGTCCTTTTCAACTTTTTTTCTGTTTAGAAATTTCTAGAAGCTTCTAAAAAAGTGCATGTTGTCCCTGTTAGTTTAAAAATCATTTGTGTGCAAATGCGCTCTATTGAACTATAGAAAATTGCATGCCTTTTTGTTCCTGTTGTGTGTATCCCTCAATGCTTAATTTGAAAATTAGTAATGTGCAATTGCGCTCTAGTGAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>501 245 161 37 32 24</canonical_bands>
                <polymorphic_bands>538 245 161 32 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATTCGGTTCACCTTTTCA</pcr_primer_p1>
		<pcr_primer_p2>AAAGGTGCATACAGTAATCTGATA</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>TAATTCGGTTCACCTTTTCAACCAGTTGAACTGATTTTTGTACATTTTAATTATCAAATTCGTATTTCTCACACTTGAGTTAGACTGAATTCCAATTTTCAGGCCGAATTTCGATATTCGGTGTTTGCGTACTTTTGGAGCTGCAGTAACCCGAAAATTTTCAAAAATCAAGCTAGAAAAATCTAGTTTTTTTCAGCTAGACTCAAATTTTTTTAAGAAACACGAATTTGTCAATATCAGATTACTGTATGCACCTTT</canonical_amplicon>
		<polymorphic_amplicon>TAATTCGGTTCACCTTTTCAACCAGTTGAACTGATTTTTGTACATTTTAATTATCAAATTCGTATTTCTCACACTTGAGTTAGACTGAATTCCAATTTTCAKGCCGAATTTCGATATTCGGTGTTTGCGTACTTTTGGAGCTGCAGTAACCCGAAAATTTTCAAAAATCAAGCTAGAAAAATCTAGTTTTTTTCAGCTAGACTCAAATTTTTTTAAGAAACACGAATTTGTCAATATCAGATTACTGTATGCACCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37419</snp_id>
        <super_contig>c012101062.Contig1</super_contig>
        <contig_pos>64196</contig_pos>
        <strand>+</strand>
        <context>GCCCTAAAAC[C/G]TATATTAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTATTCTCTGAAATTTTGTCCATGTTGAAAAATTAGGAATGCCCTAAAAC</left_flank>
        <right_flank>TATATTAGAAGGAAGGCCTCATATTATAGAAACTTCAGTCTTAAAAAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATCTTACTGTACTGTTAGCGCCGAATTTAAGGACAAGGTAAGAACTTTGTAGCCGAGAAAATGTTAGAAAAAACTCTTCCAGATCAAACCAACTTCTTGCGTGTCTCGCAGTCGCCGATATTGTCAGTTTGATAGTAATCCTTCCGCATTCTATGGCTCATTATGAAATGTTTGAAACGGCTCTTTGGTTTCGAAAATTTTATGGAAAGTATAAGTTTCAAATTATTGGAATTTCCAATTGGTCAATAGCCACAGCGACATGGTGGGTGGAAGAAAATTGAATTTAGAATATATTATTGAATTTTCAGGTTGGTTTTTGTGATATGTCTGGAGAGATTGATCATCATCAAGTATCCATTATCAGTGAGGAAACAGGCAAAGGTGGGTCCGTTTGAATCCTTTCGGATTTAGAAACCTTCAAATCAGTGAATTTTTGAATTATAGAACCTATTCTCTGAAATTTTGTCCATGTTGAAAAATTAGGAATGCCCTAAAACCTATATTAGAAGGAAGGCCTCATATTATAGAAACTTCAGTCTTAAAAAAACAAAATTCATAATCGATTAATCCTTTTTAGTTCTTCACTCCTCGAAACGTTGTCTCCATAATCGTCATCACAACATTCATCCTCACATCCTACAACCATGTCAGTCATGCATGCGCCGAAAAGCTCTTCTGTAATGGAACCCAATACCACGTGGCATGCATTGAGATCAATTCGGAACGATGGTTTCGAAATGAACCGAACCCCAATTCTGAATTAATGAAGTCGTTGGTACGGTATGCGCCACAGGTCAATGCAATATTTGTGGTTTTGATTCCGGTGATTCTTGTGATCATTTTCAATGTGATGCTCATTTTGACATTGCGACAGAGGTAGGAACAAATGAGTACTATATAATGAATGAAAAGTTCTGAATTTACAGACAAAAATTGTTCGAACCGTCGAAAACAATCCGAGGGGATTCACAATATGGATCACAGGCGAAGACAGAGCA</canonical>
            <polymorphic>GAATCTTACTGTACTGTTAGCGCCGAATTTAAGGACAAGGTAAGAACTTTGTAGCCGAGAAAATGTTAGAAAAAACTCTTCCAGATCAAACCAACTTCTTGCGTGTCTCGCAGTCGCCGATATTGTCAGTTTGATAGTAATCCTTCCGCATTCTATGGCTCATTATGAAATGTTTGAAACGGCTCTTTGGTTTCGAAAATTTTATGGAAAGTATAAGTTTCAAATTATTGGAATTTCCAATTGGTCAATAGCCACAGCGACATGGTGGGTGGAAGAAAATTGAATTTAGAATATATTATTGAATTTTCAGGTTGGTTTTTGTGATATGTCTGGAGAGATTGATCATCATCAAGTATCCATTATCAGTGAGGAAACAGGCAAAGGTGGGTCCGTTTGAATCCTTTCGGATTTAGAAACCTTCAAATCAGTGAATTTTTGAATTATAGAACCTATTCTCTGAAATTTTGTCCATGTTGAAAAATTAGGAATGCCCTAAAACSTATATTAGAAGGAAGGCCTCATATTATAGAAACTTCAGTCTTAAAAAAACAAAATTCATAATCGATTAATCCTTTTTAGTTCTTCACTCCTCGAAACGTTGTCTCCATAATCGTCATCACAACATTCATCCTCACATCCTACAACCATGTCAGTCATGCATGCGCCGAAAAGCTCTTCTGTAATGGAACCCAATACCACGTGGCATGCATTGAGATCAATTCGGAACGATGGTTTCGAAATGAACCGAACCCCAATTCTGAATTAATGAAGTCGTTGGTACGGTATGCGCCACAGGTCAATGCAATATTTGTGGTTTTGATTCCGGTGATTCTTGTGATCATTTTCAATGTGATGCTCATTTTGACATTGCGACAGAGGTAGGAACAAATGAGTACTATATAATGAATGAAAAGTTCTGAATTTACAGACAAAAATTGTTCGAACCGTCGAAAACAATCCGAGGGGATTCACAATATGGATCACAGGCGAAGACAGAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTATTCTCTGAAATTTTGTCC</pcr_primer_p1>
		<pcr_primer_p2>GTATTGGGTTCCATTACAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACCTATTCTCTGAAATTTTGTCCATGTTGAAAAATTAGGAATGCCCTAAAACCTATATTAGAAGGAAGGCCTCATATTATAGAAACTTCAGTCTTAAAAAAACAAAATTCATAATCGATTAATCCTTTTTAGTTCTTCACTCCTCGAAACGTTGTCTCCATAATCGTCATCACAACATTCATCCTCACATCCTACAACCATGTCAGTCATGCATGCGCCGAAAAGCTCTTCTGTAATGGAACCCAATAC</canonical_amplicon>
		<polymorphic_amplicon>ACCTATTCTCTGAAATTTTGTCCATGTTGAAAAATTAGGAATGCCCTAAAACSTATATTAGAAGGAAGGCCTCATATTATAGAAACTTCAGTCTTAAAAAAACAAAATTCATAATCGATTAATCCTTTTTAGTTCTTCACTCCTCGAAACGTTGTCTCCATAATCGTCATCACAACATTCATCCTCACATCCTACAACCATGTCAGTCATGCATGCGCCGAAAAGCTCTTCTGTAATGGAACCCAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37420</snp_id>
        <super_contig>c012101062.Contig1</super_contig>
        <contig_pos>64246</contig_pos>
        <strand>+</strand>
        <context>CTTAAAAAAA[C/G]AAAATTCATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTATATTAGAAGGAAGGCCTCATATTATAGAAACTTCAGTCTTAAAAAAA</left_flank>
        <right_flank>AAAATTCATAATCGATTAATCCTTTTTAGTTCTTCACTCCTCGAAACGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAGCCGAGAAAATGTTAGAAAAAACTCTTCCAGATCAAACCAACTTCTTGCGTGTCTCGCAGTCGCCGATATTGTCAGTTTGATAGTAATCCTTCCGCATTCTATGGCTCATTATGAAATGTTTGAAACGGCTCTTTGGTTTCGAAAATTTTATGGAAAGTATAAGTTTCAAATTATTGGAATTTCCAATTGGTCAATAGCCACAGCGACATGGTGGGTGGAAGAAAATTGAATTTAGAATATATTATTGAATTTTCAGGTTGGTTTTTGTGATATGTCTGGAGAGATTGATCATCATCAAGTATCCATTATCAGTGAGGAAACAGGCAAAGGTGGGTCCGTTTGAATCCTTTCGGATTTAGAAACCTTCAAATCAGTGAATTTTTGAATTATAGAACCTATTCTCTGAAATTTTGTCCATGTTGAAAAATTAGGAATGCCCTAAAACCTATATTAGAAGGAAGGCCTCATATTATAGAAACTTCAGTCTTAAAAAAACAAAATTCATAATCGATTAATCCTTTTTAGTTCTTCACTCCTCGAAACGTTGTCTCCATAATCGTCATCACAACATTCATCCTCACATCCTACAACCATGTCAGTCATGCATGCGCCGAAAAGCTCTTCTGTAATGGAACCCAATACCACGTGGCATGCATTGAGATCAATTCGGAACGATGGTTTCGAAATGAACCGAACCCCAATTCTGAATTAATGAAGTCGTTGGTACGGTATGCGCCACAGGTCAATGCAATATTTGTGGTTTTGATTCCGGTGATTCTTGTGATCATTTTCAATGTGATGCTCATTTTGACATTGCGACAGAGGTAGGAACAAATGAGTACTATATAATGAATGAAAAGTTCTGAATTTACAGACAAAAATTGTTCGAACCGTCGAAAACAATCCGAGGGGATTCACAATATGGATCACAGGCGAAGACAGAGCACAAGGTTACGATTACGGTCACAGCTATTGTTACATGTTTCACGATAACAC</canonical>
            <polymorphic>GTAGCCGAGAAAATGTTAGAAAAAACTCTTCCAGATCAAACCAACTTCTTGCGTGTCTCGCAGTCGCCGATATTGTCAGTTTGATAGTAATCCTTCCGCATTCTATGGCTCATTATGAAATGTTTGAAACGGCTCTTTGGTTTCGAAAATTTTATGGAAAGTATAAGTTTCAAATTATTGGAATTTCCAATTGGTCAATAGCCACAGCGACATGGTGGGTGGAAGAAAATTGAATTTAGAATATATTATTGAATTTTCAGGTTGGTTTTTGTGATATGTCTGGAGAGATTGATCATCATCAAGTATCCATTATCAGTGAGGAAACAGGCAAAGGTGGGTCCGTTTGAATCCTTTCGGATTTAGAAACCTTCAAATCAGTGAATTTTTGAATTATAGAACCTATTCTCTGAAATTTTGTCCATGTTGAAAAATTAGGAATGCCCTAAAACCTATATTAGAAGGAAGGCCTCATATTATAGAAACTTCAGTCTTAAAAAAASAAAATTCATAATCGATTAATCCTTTTTAGTTCTTCACTCCTCGAAACGTTGTCTCCATAATCGTCATCACAACATTCATCCTCACATCCTACAACCATGTCAGTCATGCATGCGCCGAAAAGCTCTTCTGTAATGGAACCCAATACCACGTGGCATGCATTGAGATCAATTCGGAACGATGGTTTCGAAATGAACCGAACCCCAATTCTGAATTAATGAAGTCGTTGGTACGGTATGCGCCACAGGTCAATGCAATATTTGTGGTTTTGATTCCGGTGATTCTTGTGATCATTTTCAATGTGATGCTCATTTTGACATTGCGACAGAGGTAGGAACAAATGAGTACTATATAATGAATGAAAAGTTCTGAATTTACAGACAAAAATTGTTCGAACCGTCGAAAACAATCCGAGGGGATTCACAATATGGATCACAGGCGAAGACAGAGCACAAGGTTACGATTACGGTCACAGCTATTGTTACATGTTTCACGATAACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTATTCTCTGAAATTTTGTCC</pcr_primer_p1>
		<pcr_primer_p2>GTATTGGGTTCCATTACAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACCTATTCTCTGAAATTTTGTCCATGTTGAAAAATTAGGAATGCCCTAAAACCTATATTAGAAGGAAGGCCTCATATTATAGAAACTTCAGTCTTAAAAAAACAAAATTCATAATCGATTAATCCTTTTTAGTTCTTCACTCCTCGAAACGTTGTCTCCATAATCGTCATCACAACATTCATCCTCACATCCTACAACCATGTCAGTCATGCATGCGCCGAAAAGCTCTTCTGTAATGGAACCCAATAC</canonical_amplicon>
		<polymorphic_amplicon>ACCTATTCTCTGAAATTTTGTCCATGTTGAAAAATTAGGAATGCCCTAAAACCTATATTAGAAGGAAGGCCTCATATTATAGAAACTTCAGTCTTAAAAAAASAAAATTCATAATCGATTAATCCTTTTTAGTTCTTCACTCCTCGAAACGTTGTCTCCATAATCGTCATCACAACATTCATCCTCACATCCTACAACCATGTCAGTCATGCATGCGCCGAAAAGCTCTTCTGTAATGGAACCCAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37421</snp_id>
        <super_contig>c012101062.Contig1</super_contig>
        <contig_pos>96661</contig_pos>
        <strand>+</strand>
        <context>GAAAAATGGA[G/T]TTCTAACTCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACGGACTCAATTGTGATCGACGATTGCGTAAGTGCTTTGAGAAAAATGGA</left_flank>
        <right_flank>TTCTAACTCTTCTAAAATTTTCAGGATGTGCCACAACGACGTGCGCCAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATCTCGCAGGATCCTTCGTTTGTGCCTGTAAGCCTGGATTCACTGGAACCAACTGTCAGCATCCAGTAAACATGTGTGAATCGTACGGGTGTAAAAATGGAGGATCGTGCGACCACCTCCCGGATCAGACTCCAGTTTGTTCCTGCCCTCCAGGATTTATGGGACAGAAGTGCGAGAAGGCGTGTCCACCCGGCAAAGGTGGATATAATTGCTCATTGCTCCTGGATCGTCCTCACTGCTCACGGACCAATGGAATGTGCTATAACGGAGGCGTGTGCAATGGTGGATTCTGTAAATGTCCTCCGTCGTTCACCGGCGATCGATGCGAACTCAATCGGACGGCGGTGCTCCCAATGGAAGTGTCCTGTGATCACAATCCGTGCATGAACGATGGAAAATGTGTAGACTATGGTGATGGATACGCATGCATTTGTCCACCTGGATTCTACGGACTCAATTGTGATCGACGATTGCGTAAGTGCTTTGAGAAAAATGGAGTTCTAACTCTTCTAAAATTTTCAGGATGTGCCACAACGACGTGCGCCAACGGTGGATTCTGTCGAATGGATAACAACACCATGACTTGTGCCTGTCCTCTTGGATACTCCGGAGATTATTGTGAGATCATGGAACGACTCGATTGCAAGCAAAACCCCTGTAAAAACGGTGGAGTGTGCAATGGAACCGATGGAACCTGCGAGTGCATGTACGGATACACTGGAACCAGGTGTCAGGAGAAGGTTGAAATCGATAAGAGCAAGGAGATGTTAGTGTTTTTTATCAATGAGCTTGTAAATCAGAAATCTTATTTTCAGTATGTTCCGTGAACTGTGCAAGAAGAAGAATTGCAAAGCTCTGGCGGGCAATGGAATCTGTGATGAAGACTGTAACTATGCAGAGTGTCAGTTCGACGGTGGAGACTGTTCCGGAGGACAACAACCGTTCTCCAGATGCATGTACCCTGCAAAATGCGCCCGTTCGTTTGCAGACGGAATCTG</canonical>
            <polymorphic>CAATCTCGCAGGATCCTTCGTTTGTGCCTGTAAGCCTGGATTCACTGGAACCAACTGTCAGCATCCAGTAAACATGTGTGAATCGTACGGGTGTAAAAATGGAGGATCGTGCGACCACCTCCCGGATCAGACTCCAGTTTGTTCCTGCCCTCCAGGATTTATGGGACAGAAGTGCGAGAAGGCGTGTCCACCCGGCAAAGGTGGATATAATTGCTCATTGCTCCTGGATCGTCCTCACTGCTCACGGACCAATGGAATGTGCTATAACGGAGGCGTGTGCAATGGTGGATTCTGTAAATGTCCTCCGTCGTTCACCGGCGATCGATGCGAACTCAATCGGACGGCGGTGCTCCCAATGGAAGTGTCCTGTGATCACAATCCGTGCATGAACGATGGAAAATGTGTAGACTATGGTGATGGATACGCATGCATTTGTCCACCTGGATTCTACGGACTCAATTGTGATCGACGATTGCGTAAGTGCTTTGAGAAAAATGGAKTTCTAACTCTTCTAAAATTTTCAGGATGTGCCACAACGACGTGCGCCAACGGTGGATTCTGTCGAATGGATAACAACACCATGACTTGTGCCTGTCCTCTTGGATACTCCGGAGATTATTGTGAGATCATGGAACGACTCGATTGCAAGCAAAACCCCTGTAAAAACGGTGGAGTGTGCAATGGAACCGATGGAACCTGCGAGTGCATGTACGGATACACTGGAACCAGGTGTCAGGAGAAGGTTGAAATCGATAAGAGCAAGGAGATGTTAGTGTTTTTTATCAATGAGCTTGTAAATCAGAAATCTTATTTTCAGTATGTTCCGTGAACTGTGCAAGAAGAAGAATTGCAAAGCTCTGGCGGGCAATGGAATCTGTGATGAAGACTGTAACTATGCAGAGTGTCAGTTCGACGGTGGAGACTGTTCCGGAGGACAACAACCGTTCTCCAGATGCATGTACCCTGCAAAATGCGCCCGTTCGTTTGCAGACGGAATCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACGATGGAAAATGTGTAGACT</pcr_primer_p1>
		<pcr_primer_p2>GTTCCATGATCTCACAATAATCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AACGATGGAAAATGTGTAGACTATGGTGATGGATACGCATGCATTTGTCCACCTGGATTCTACGGACTCAATTGTGATCGACGATTGCGTAAGTGCTTTGAGAAAAATGGAGTTCTAACTCTTCTAAAATTTTCAGGATGTGCCACAACGACGTGCGCCAACGGTGGATTCTGTCGAATGGATAACAACACCATGACTTGTGCCTGTCCTCTTGGATACTCCGGAGATTATTGTGAGATCATGGAAC</canonical_amplicon>
		<polymorphic_amplicon>AACGATGGAAAATGTGTAGACTATGGTGATGGATACGCATGCATTTGTCCACCTGGATTCTACGGACTCAATTGTGATCGACGATTGCGTAAGTGCTTTGAGAAAAATGGAKTTCTAACTCTTCTAAAATTTTCAGGATGTGCCACAACGACGTGCGCCAACGGTGGATTCTGTCGAATGGATAACAACACCATGACTTGTGCCTGTCCTCTTGGATACTCCGGAGATTATTGTGAGATCATGGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37422</snp_id>
        <super_contig>c012101062.Contig1</super_contig>
        <contig_pos>106548</contig_pos>
        <strand>+</strand>
        <context>AGAGGTAGAT[A/G]TGATGCTTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTATTTCACTGATCCCTAGTAGAGTTAAAAGGGGAATGTAGAGGTAGAT</left_flank>
        <right_flank>TGATGCTTACGACCATATCACGTTGAATGCACGCCATCCCGTCCGATCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAACAATCCGAAATACGAAAAAAAAATGGAAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGATTTTTTGACACCGGGCCCGGCCGGGCTTTGGCGGGCCGGCTCGGAATTTTACAAGTATGAAAATACTCTCTCGGCGGCCGCCGACGACTAAATGAACTGAATGCACTGAAAACTTTGAAGGCCGAAAAGAGGTGTTAAAACTGATTTTCCGCAAAAAATGAACAGGACATACTCATCACGAAATTTTTCGCTCTATCTAATGATACCAAAATCTCAAAGGCATCACTTTAGAAAATCGATCTTTTCTCAACGACTAGAGAGTTTCATGAGGCATATTGTGTCGCGGTGAATGTAGACGTGATAGGGCCATCAGAATTCGGTGATAATTTTCTCAGACCATGTCCAGGAAAGGCTGTACTATCATATGGAGATAGGTTTATTTCACTGATCCCTAGTAGAGTTAAAAGGGGAATGTAGAGGTAGATGTGATGCTTACGACCATATCACGTTGAATGCACGCCATCCCGTCCGATCTGGCAAGTTAAGCAACGTTGAGTCCAGTTAGTACTTGGATCGGAGACGGCCTGGGAATCCTGGATGTTGTAAGCTTTTTGCTTTTTTTGTATTCAATTTCATAAATATAATTCAAAGATTTCAATTTTTAAGATTCAATGTTCTTAAAAAATTGCAGAATTTTCATCATTGGTTTGGATTTTCGTGCTTTTTTTCTAATATTTATTTATTTTGTAAATAAATTTGTAAAATGTTTTCCTCACAAATGAGAATTGTTGTCGAAAAATATAAAATTGTGTCAAATTCAATCAATTTCAATATGAAAAATTTGAATGTTCAAGATGCATTCGCGTTTTCTTCCCACCAAATTGCTGAGTTTCTGAAATAAATTGTGCATGAATCGACTGAAAATAGATGTGTGTGTATAAAATTGATATTGTAAAAATTTCAGAATCTAAGCCTAAAATTTTAAG</canonical>
            <polymorphic>CAAACAATCCGAAATACGAAAAAAAAATGGAAAAAATTATATTGAGAGCTCAAAATTTGGCTCAAAAATACAGATTTTTTGACACCGGGCCCGGCCGGGCTTTGGCGGGCCGGCTCGGAATTTTACAAGTATGAAAATACTCTCTCGGCGGCCGCCGACGACTAAATGAACTGAATGCACTGAAAACTTTGAAGGCCGAAAAGAGGTGTTAAAACTGATTTTCCGCAAAAAATGAACAGGACATACTCATCACGAAATTTTTCGCTCTATCTAATGATACCAAAATCTCAAAGGCATCACTTTAGAAAATCGATCTTTTCTCAACGACTAGAGAGTTTCATGAGGCATATTGTGTCGCGGTGAATGTAGACGTGATAGGGCCATCAGAATTCGGTGATAATTTTCTCAGACCATGTCCAGGAAAGGCTGTACTATCATATGGAGATAGGTTTATTTCACTGATCCCTAGTAGAGTTAAAAGGGGAATGTAGAGGTAGATRTGATGCTTACGACCATATCACGTTGAATGCACGCCATCCCGTCCGATCTGGCAAGTTAAGCAACGTTGAGTCCAGTTAGTACTTGGATCGGAGACGGCCTGGGAATCCTGGATGTTGTAAGCTTTTTGCTTTTTTTGTATTCAATTTCATAAATATAATTCAAAGATTTCAATTTTTAAGATTCAATGTTCTTAAAAAATTGCAGAATTTTCATCATTGGTTTGGATTTTCGTGCTTTTTTTCTAATATTTATTTATTTTGTAAATAAATTTGTAAAATGTTTTCCTCACAAATGAGAATTGTTGTCGAAAAATATAAAATTGTGTCAAATTCAATCAATTTCAATATGAAAAATTTGAATGTTCAAGATGCATTCGCGTTTTCTTCCCACCAAATTGCTGAGTTTCTGAAATAAATTGTGCATGAATCGACTGAAAATAGATGTGTGTGTATAAAATTGATATTGTAAAAATTTCAGAATCTAAGCCTAAAATTTTAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>203 95 84 65 62 55 55 50 47 44 44 36 31 29 25 22 18 12 11 8 2 2</canonical_bands>
                <polymorphic_bands>203 95 84 65 62 62 55 55 50 47 44 36 31 29 25 22 12 11 8 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATCAGAATTCGGTGATAATTT</pcr_primer_p1>
		<pcr_primer_p2>AAAGCAAAAAGCTTACAACATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CATCAGAATTCGGTGATAATTTTCTCAGACCATGTCCAGGAAAGGCTGTACTATCATATGGAGATAGGTTTATTTCACTGATCCCTAGTAGAGTTAAAAGGGGAATGTAGAGGTAGATGTGATGCTTACGACCATATCACGTTGAATGCACGCCATCCCGTCCGATCTGGCAAGTTAAGCAACGTTGAGTCCAGTTAGTACTTGGATCGGAGACGGCCTGGGAATCCTGGATGTTGTAAGCTTTTTGCTTT</canonical_amplicon>
		<polymorphic_amplicon>CATCAGAATTCGGTGATAATTTTCTCAGACCATGTCCAGGAAAGGCTGTACTATCATATGGAGATAGGTTTATTTCACTGATCCCTAGTAGAGTTAAAAGGGGAATGTAGAGGTAGATRTGATGCTTACGACCATATCACGTTGAATGCACGCCATCCCGTCCGATCTGGCAAGTTAAGCAACGTTGAGTCCAGTTAGTACTTGGATCGGAGACGGCCTGGGAATCCTGGATGTTGTAAGCTTTTTGCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37423</snp_id>
        <super_contig>c012101062.Contig1</super_contig>
        <contig_pos>107008</contig_pos>
        <strand>+</strand>
        <context>GTATAAAATT[G/T]ATATTGTAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATAAATTGTGCATGAATCGACTGAAAATAGATGTGTGTGTATAAAATT</left_flank>
        <right_flank>ATATTGTAAAAATTTCAGAATCTAAGCCTAAAATTTTAAGAATTCACTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCCCTAGTAGAGTTAAAAGGGGAATGTAGAGGTAGATGTGATGCTTACGACCATATCACGTTGAATGCACGCCATCCCGTCCGATCTGGCAAGTTAAGCAACGTTGAGTCCAGTTAGTACTTGGATCGGAGACGGCCTGGGAATCCTGGATGTTGTAAGCTTTTTGCTTTTTTTGTATTCAATTTCATAAATATAATTCAAAGATTTCAATTTTTAAGATTCAATGTTCTTAAAAAATTGCAGAATTTTCATCATTGGTTTGGATTTTCGTGCTTTTTTTCTAATATTTATTTATTTTGTAAATAAATTTGTAAAATGTTTTCCTCACAAATGAGAATTGTTGTCGAAAAATATAAAATTGTGTCAAATTCAATCAATTTCAATATGAAAAATTTGAATGTTCAAGATGCATTCGCGTTTTCTTCCCACCAAATTGCTGAGTTTCTGAAATAAATTGTGCATGAATCGACTGAAAATAGATGTGTGTGTATAAAATTGATATTGTAAAAATTTCAGAATCTAAGCCTAAAATTTTAAGAATTCACTAGAATTTAAATGATGACAATTCCGATCGTTTACAACCCTTTTACATGCATCGATTTTTCGATTTTCAATGGACCATAACTCCGGCATGCGTTGACCGATTTTCAATTTTTAAAGTTATTTTGTCTCCCCGAGAGGAGACGTTCCAAAATTTATAGCTAACGCCAAATTTCTTTGGGTCAGTTTCAATGTTTACCTCAAACTTGGGTAATTAAACAAACTACATCGGCGGGCTTCGCACACTAGTGGAAAACGAGCGGCCGACACCAATCGAGGCCCGCGTCGGCCACCGCATTTCGACAGCGTGCGCGCGCACACTGCTGGGTGAGTCTTCTTCTACTGTTGGGGGGACTGGGAGAATTCGCTCTTCTGCGTTTCGATTTATTTCACTGATCCCTAGTAGAGTTAAAAGGGGAATGTAGAGGTAGATGTGATGCTTACGACCATATCACGTT</canonical>
            <polymorphic>GATCCCTAGTAGAGTTAAAAGGGGAATGTAGAGGTAGATGTGATGCTTACGACCATATCACGTTGAATGCACGCCATCCCGTCCGATCTGGCAAGTTAAGCAACGTTGAGTCCAGTTAGTACTTGGATCGGAGACGGCCTGGGAATCCTGGATGTTGTAAGCTTTTTGCTTTTTTTGTATTCAATTTCATAAATATAATTCAAAGATTTCAATTTTTAAGATTCAATGTTCTTAAAAAATTGCAGAATTTTCATCATTGGTTTGGATTTTCGTGCTTTTTTTCTAATATTTATTTATTTTGTAAATAAATTTGTAAAATGTTTTCCTCACAAATGAGAATTGTTGTCGAAAAATATAAAATTGTGTCAAATTCAATCAATTTCAATATGAAAAATTTGAATGTTCAAGATGCATTCGCGTTTTCTTCCCACCAAATTGCTGAGTTTCTGAAATAAATTGTGCATGAATCGACTGAAAATAGATGTGTGTGTATAAAATTKATATTGTAAAAATTTCAGAATCTAAGCCTAAAATTTTAAGAATTCACTAGAATTTAAATGATGACAATTCCGATCGTTTACAACCCTTTTACATGCATCGATTTTTCGATTTTCAATGGACCATAACTCCGGCATGCGTTGACCGATTTTCAATTTTTAAAGTTATTTTGTCTCCCCGAGAGGAGACGTTCCAAAATTTATAGCTAACGCCAAATTTCTTTGGGTCAGTTTCAATGTTTACCTCAAACTTGGGTAATTAAACAAACTACATCGGCGGGCTTCGCACACTAGTGGAAAACGAGCGGCCGACACCAATCGAGGCCCGCGTCGGCCACCGCATTTCGACAGCGTGCGCGCGCACACTGCTGGGTGAGTCTTCTTCTACTGTTGGGGGGACTGGGAGAATTCGCTCTTCTGCGTTTCGATTTATTTCACTGATCCCTAGTAGAGTTAAAAGGGGAATGTAGAGGTAGATGTGATGCTTACGACCATATCACGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCGAAAAATATAAAATTGTGTCA</pcr_primer_p1>
		<pcr_primer_p2>ATGTAAAAGGGTTGTAAACGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCGAAAAATATAAAATTGTGTCAAATTCAATCAATTTCAATATGAAAAATTTGAATGTTCAAGATGCATTCGCGTTTTCTTCCCACCAAATTGCTGAGTTTCTGAAATAAATTGTGCATGAATCGACTGAAAATAGATGTGTGTGTATAAAATTGATATTGTAAAAATTTCAGAATCTAAGCCTAAAATTTTAAGAATTCACTAGAATTTAAATGATGACAATTCCGATCGTTTACAACCCTTTTACAT</canonical_amplicon>
		<polymorphic_amplicon>GTCGAAAAATATAAAATTGTGTCAAATTCAATCAATTTCAATATGAAAAATTTGAATGTTCAAGATGCATTCGCGTTTTCTTCCCACCAAATTGCTGAGTTTCTGAAATAAATTGTGCATGAATCGACTGAAAATAGATGTGTGTGTATAAAATTKATATTGTAAAAATTTCAGAATCTAAGCCTAAAATTTTAAGAATTCACTAGAATTTAAATGATGACAATTCCGATCGTTTACAACCCTTTTACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37424</snp_id>
        <super_contig>c012101062.Contig1</super_contig>
        <contig_pos>107123</contig_pos>
        <strand></strand>
        <context>TTCGATTTTC[A/G]ATGRACCATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATTCCGATCGTTTACAACCCTTTTACATGCATCGATTTTTCGATTTTC</left_flank>
        <right_flank>ATGGACCATAACTCCGGCATGCGTTGACCGATTTTCAATTTTTAAAGTTA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGTACTTGGATCGGAGACGGCCTGGGAATCCTGGATGTTGTAAGCTTTTTGCTTTTTTTGTATTCAATTTCATAAATATAATTCAAAGATTTCAATTTTTAAGATTCAATGTTCTTAAAAAATTGCAGAATTTTCATCATTGGTTTGGATTTTCGTGCTTTTTTTCTAATATTTATTTATTTTGTAAATAAATTTGTAAAATGTTTTCCTCACAAATGAGAATTGTTGTCGAAAAATATAAAATTGTGTCAAATTCAATCAATTTCAATATGAAAAATTTGAATGTTCAAGATGCATTCGCGTTTTCTTCCCACCAAATTGCTGAGTTTCTGAAATAAATTGTGCATGAATCGACTGAAAATAGATGTGTGTGTATAAAATTGATATTGTAAAAATTTCAGAATCTAAGCCTAAAATTTTAAGAATTCACTAGAATTTAAATGATGACAATTCCGATCGTTTACAACCCTTTTACATGCATCGATTTTTCGATTTTCAATGGACCATAACTCCGGCATGCGTTGACCGATTTTCAATTTTTAAAGTTATTTTGTCTCCCCGAGAGGAGACGTTCCAAAATTTATAGCTAACGCCAAATTTCTTTGGGTCAGTTTCAATGTTTACCTCAAACTTGGGTAATTAAACAAACTACATCGGCGGGCTTCGCACACTAGTGGAAAACGAGCGGCCGACACCAATCGAGGCCCGCGTCGGCCACCGCATTTCGACAGCGTGCGCGCGCACACTGCTGGGTGAGTCTTCTTCTACTGTTGGGGGGACTGGGAGAATTCGCTCTTCTGCGTTTCGATTTATTTCACTGATCCCTAGTAGAGTTAAAAGGGGAATGTAGAGGTAGATGTGATGCTTACGACCATATCACGTTGAATGCACGCCATCCCGTCCGATCTGGCAAGTTAAGCAACGTTGAGTCCAGTTAGTACTTGGATCGGAGACGGCCTGGGAATCCTGGATGTTGTAAGCTTTTTGCTTTTTTTGTA</canonical>
            <polymorphic>TTAGTACTTGGATCGGAGACGGCCTGGGAATCCTGGATGTTGTAAGCTTTTTGCTTTTTTTGTATTCAATTTCATAAATATAATTCAAAGATTTCAATTTTTAAGATTCAATGTTCTTAAAAAATTGCAGAATTTTCATCATTGGTTTGGATTTTCGTGCTTTTTTTCTAATATTTATTTATTTTGTAAATAAATTTGTAAAATGTTTTCCTCACAAATGAGAATTGTTGTCGAAAAATATAAAATTGTGTCAAATTCAATCAATTTCAATATGAAAAATTTGAATGTTCAAGATGCATTCGCGTTTTCTTCCCACCAAATTGCTGAGTTTCTGAAATAAATTGTGCATGAATCGACTGAAAATAGATGTGTGTGTATAAAATTGATATTGTAAAAATTTCAGAATCTAAGCCTAAAATTTTAAGAATTCACTAGAATTTAAATGATGACAATTCCGATCGTTTACAACCCTTTTACATGCATCGATTTTTCGATTTTCRATGGACCATAACTCCGGCATGCGTTGACCGATTTTCAATTTTTAAAGTTATTTTGTCTCCCCGAGAGGAGACGTTCCAAAATTTATAGCTAACGCCAAATTTCTTTGGGTCAGTTTCAATGTTTACCTCAAACTTGGGTAATTAAACAAACTACATCGGCGGGCTTCGCACACTAGTGGAAAACGAGCGGCCGACACCAATCGAGGCCCGCGTCGGCCACCGCATTTCGACAGCGTGCGCGCGCACACTGCTGGGTGAGTCTTCTTCTACTGTTGGGGGGACTGGGAGAATTCGCTCTTCTGCGTTTCGATTTATTTCACTGATCCCTAGTAGAGTTAAAAGGGGAATGTAGAGGTAGATGTGATGCTTACGACCATATCACGTTGAATGCACGCCATCCCGTCCGATCTGGCAAGTTAAGCAACGTTGAGTCCAGTTAGTACTTGGATCGGAGACGGCCTGGGAATCCTGGATGTTGTAAGCTTTTTGCTTTTTTTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATCGACTGAAAATAGATGTGT</pcr_primer_p1>
		<pcr_primer_p2>TTAGCTATAAATTTTGGAACGTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GAATCGACTGAAAATAGATGTGTGTGTATAAAATTGATATTGTAAAAATTTCAGAATCTAAGCCTAAAATTTTAAGAATTCACTAGAATTTAAATGATGACAATTCCGATCGTTTACAACCCTTTTACATGCATCGATTTTTCGATTTTCAATGGACCATAACTCCGGCATGCGTTGACCGATTTTCAATTTTTAAAGTTATTTTGTCTCCCCGAGAGGAGACGTTCCAAAATTTATAGCTAA</canonical_amplicon>
		<polymorphic_amplicon>GAATCGACTGAAAATAGATGTGTGTGTATAAAATTGATATTGTAAAAATTTCAGAATCTAAGCCTAAAATTTTAAGAATTCACTAGAATTTAAATGATGACAATTCCGATCGTTTACAACCCTTTTACATGCATCGATTTTTCGATTTTCRATGGACCATAACTCCGGCATGCGTTGACCGATTTTCAATTTTTAAAGTTATTTTGTCTCCCCGAGAGGAGACGTTCCAAAATTTATAGCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37425</snp_id>
        <super_contig>c012101062.Contig1</super_contig>
        <contig_pos>107127</contig_pos>
        <strand></strand>
        <context>ATTTTCRATG[G/A]ACCATAACTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCCGATCGTTTACAACCCTTTTACATGCATCGATTTTTCGATTTTCAATG</left_flank>
        <right_flank>ACCATAACTCCGGCATGCGTTGACCGATTTTCAATTTTTAAAGTTATTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTTGGATCGGAGACGGCCTGGGAATCCTGGATGTTGTAAGCTTTTTGCTTTTTTTGTATTCAATTTCATAAATATAATTCAAAGATTTCAATTTTTAAGATTCAATGTTCTTAAAAAATTGCAGAATTTTCATCATTGGTTTGGATTTTCGTGCTTTTTTTCTAATATTTATTTATTTTGTAAATAAATTTGTAAAATGTTTTCCTCACAAATGAGAATTGTTGTCGAAAAATATAAAATTGTGTCAAATTCAATCAATTTCAATATGAAAAATTTGAATGTTCAAGATGCATTCGCGTTTTCTTCCCACCAAATTGCTGAGTTTCTGAAATAAATTGTGCATGAATCGACTGAAAATAGATGTGTGTGTATAAAATTGATATTGTAAAAATTTCAGAATCTAAGCCTAAAATTTTAAGAATTCACTAGAATTTAAATGATGACAATTCCGATCGTTTACAACCCTTTTACATGCATCGATTTTTCGATTTTCAATGGACCATAACTCCGGCATGCGTTGACCGATTTTCAATTTTTAAAGTTATTTTGTCTCCCCGAGAGGAGACGTTCCAAAATTTATAGCTAACGCCAAATTTCTTTGGGTCAGTTTCAATGTTTACCTCAAACTTGGGTAATTAAACAAACTACATCGGCGGGCTTCGCACACTAGTGGAAAACGAGCGGCCGACACCAATCGAGGCCCGCGTCGGCCACCGCATTTCGACAGCGTGCGCGCGCACACTGCTGGGTGAGTCTTCTTCTACTGTTGGGGGGACTGGGAGAATTCGCTCTTCTGCGTTTCGATTTATTTCACTGATCCCTAGTAGAGTTAAAAGGGGAATGTAGAGGTAGATGTGATGCTTACGACCATATCACGTTGAATGCACGCCATCCCGTCCGATCTGGCAAGTTAAGCAACGTTGAGTCCAGTTAGTACTTGGATCGGAGACGGCCTGGGAATCCTGGATGTTGTAAGCTTTTTGCTTTTTTTGTATTCA</canonical>
            <polymorphic>TACTTGGATCGGAGACGGCCTGGGAATCCTGGATGTTGTAAGCTTTTTGCTTTTTTTGTATTCAATTTCATAAATATAATTCAAAGATTTCAATTTTTAAGATTCAATGTTCTTAAAAAATTGCAGAATTTTCATCATTGGTTTGGATTTTCGTGCTTTTTTTCTAATATTTATTTATTTTGTAAATAAATTTGTAAAATGTTTTCCTCACAAATGAGAATTGTTGTCGAAAAATATAAAATTGTGTCAAATTCAATCAATTTCAATATGAAAAATTTGAATGTTCAAGATGCATTCGCGTTTTCTTCCCACCAAATTGCTGAGTTTCTGAAATAAATTGTGCATGAATCGACTGAAAATAGATGTGTGTGTATAAAATTGATATTGTAAAAATTTCAGAATCTAAGCCTAAAATTTTAAGAATTCACTAGAATTTAAATGATGACAATTCCGATCGTTTACAACCCTTTTACATGCATCGATTTTTCGATTTTCAATGRACCATAACTCCGGCATGCGTTGACCGATTTTCAATTTTTAAAGTTATTTTGTCTCCCCGAGAGGAGACGTTCCAAAATTTATAGCTAACGCCAAATTTCTTTGGGTCAGTTTCAATGTTTACCTCAAACTTGGGTAATTAAACAAACTACATCGGCGGGCTTCGCACACTAGTGGAAAACGAGCGGCCGACACCAATCGAGGCCCGCGTCGGCCACCGCATTTCGACAGCGTGCGCGCGCACACTGCTGGGTGAGTCTTCTTCTACTGTTGGGGGGACTGGGAGAATTCGCTCTTCTGCGTTTCGATTTATTTCACTGATCCCTAGTAGAGTTAAAAGGGGAATGTAGAGGTAGATGTGATGCTTACGACCATATCACGTTGAATGCACGCCATCCCGTCCGATCTGGCAAGTTAAGCAACGTTGAGTCCAGTTAGTACTTGGATCGGAGACGGCCTGGGAATCCTGGATGTTGTAAGCTTTTTGCTTTTTTTGTATTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>499 299 202</canonical_bands>
                <polymorphic_bands>701 299</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATCGACTGAAAATAGATGTGT</pcr_primer_p1>
		<pcr_primer_p2>TTAGCTATAAATTTTGGAACGTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GAATCGACTGAAAATAGATGTGTGTGTATAAAATTGATATTGTAAAAATTTCAGAATCTAAGCCTAAAATTTTAAGAATTCACTAGAATTTAAATGATGACAATTCCGATCGTTTACAACCCTTTTACATGCATCGATTTTTCGATTTTCAATGGACCATAACTCCGGCATGCGTTGACCGATTTTCAATTTTTAAAGTTATTTTGTCTCCCCGAGAGGAGACGTTCCAAAATTTATAGCTAA</canonical_amplicon>
		<polymorphic_amplicon>GAATCGACTGAAAATAGATGTGTGTGTATAAAATTGATATTGTAAAAATTTCAGAATCTAAGCCTAAAATTTTAAGAATTCACTAGAATTTAAATGATGACAATTCCGATCGTTTACAACCCTTTTACATGCATCGATTTTTCGATTTTCAATGRACCATAACTCCGGCATGCGTTGACCGATTTTCAATTTTTAAAGTTATTTTGTCTCCCCGAGAGGAGACGTTCCAAAATTTATAGCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37426</snp_id>
        <super_contig>c012101062.Contig1</super_contig>
        <contig_pos>107271</contig_pos>
        <strand></strand>
        <context>GTAATTAAAC[A/C]AACTACATCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTTCTTTGGGTCAGTTTCAATGTTTACCTCAAACTTGGGTAATTAAAC</left_flank>
        <right_flank>AACTACATCGGCGGGCTTCGCACACTAGTGGAAAACGAGCGGCCGACACC</right_flank>
        <qual_score>47</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATTTTCGTGCTTTTTTTCTAATATTTATTTATTTTGTAAATAAATTTGTAAAATGTTTTCCTCACAAATGAGAATTGTTGTCGAAAAATATAAAATTGTGTCAAATTCAATCAATTTCAATATGAAAAATTTGAATGTTCAAGATGCATTCGCGTTTTCTTCCCACCAAATTGCTGAGTTTCTGAAATAAATTGTGCATGAATCGACTGAAAATAGATGTGTGTGTATAAAATTGATATTGTAAAAATTTCAGAATCTAAGCCTAAAATTTTAAGAATTCACTAGAATTTAAATGATGACAATTCCGATCGTTTACAACCCTTTTACATGCATCGATTTTTCGATTTTCAATGGACCATAACTCCGGCATGCGTTGACCGATTTTCAATTTTTAAAGTTATTTTGTCTCCCCGAGAGGAGACGTTCCAAAATTTATAGCTAACGCCAAATTTCTTTGGGTCAGTTTCAATGTTTACCTCAAACTTGGGTAATTAAACAAACTACATCGGCGGGCTTCGCACACTAGTGGAAAACGAGCGGCCGACACCAATCGAGGCCCGCGTCGGCCACCGCATTTCGACAGCGTGCGCGCGCACACTGCTGGGTGAGTCTTCTTCTACTGTTGGGGGGACTGGGAGAATTCGCTCTTCTGCGTTTCGATTTATTTCACTGATCCCTAGTAGAGTTAAAAGGGGAATGTAGAGGTAGATGTGATGCTTACGACCATATCACGTTGAATGCACGCCATCCCGTCCGATCTGGCAAGTTAAGCAACGTTGAGTCCAGTTAGTACTTGGATCGGAGACGGCCTGGGAATCCTGGATGTTGTAAGCTTTTTGCTTTTTTTGTATTCAATTTCATAATATGAATTCAAAGATTTCAATTTTTAAGATTCAATGTTCTTAAAAAATTGCAGAATTTTCATCATTGGTTTGGATTTTCGTGCTTTTTTTCTAATATTTATTTATTTTGTAAATAAATTTGTAAAATGTTTTCCT</canonical>
            <polymorphic>GGATTTTCGTGCTTTTTTTCTAATATTTATTTATTTTGTAAATAAATTTGTAAAATGTTTTCCTCACAAATGAGAATTGTTGTCGAAAAATATAAAATTGTGTCAAATTCAATCAATTTCAATATGAAAAATTTGAATGTTCAAGATGCATTCGCGTTTTCTTCCCACCAAATTGCTGAGTTTCTGAAATAAATTGTGCATGAATCGACTGAAAATAGATGTGTGTGTATAAAATTGATATTGTAAAAATTTCAGAATCTAAGCCTAAAATTTTAAGAATTCACTAGAATTTAAATGATGACAATTCCGATCGTTTACAACCCTTTTACATGCATCGATTTTTCGATTTTCAATGGACCATAACTCCGGCATGCGTTGACCGATTTTCAATTTTTAAAGTTATTTTGTCTCCCCGAGAGGAGACGTTCCAAAATTTATAGCTAACGCCAAATTTCTTTGGGTCAGTTTCAATGTTTACCTCAAACTTGGGTAATTAAACMAACTACATCGGCGGGCTTCGCACACTAGTGGAAAACGAGCGGCCGACACCAATCGAGGCCCGCGTCGGCCACCGCATTTCGACAGCGTGCGCGCGCACACTGCTGGGTGAGTCTTCTTCTACTGTTGGGGGGACTGGGAGAATTCGCTCTTCTGCGTTTCGATTTATTTCACTGATCCCTAGTAGAGTTAAAAGGGGAATGTAGAGGTAGATGTGATGCTTACGACCATATCACGTTGAATGCACGCCATCCCGTCCGATCTGGCAAGTTAAGCAACGTTGAGTCCAGTTAGTACTTGGATCGGAGACGGCCTGGGAATCCTGGATGTTGTAAGCTTTTTGCTTTTTTTGTATTCAATTTCATAATATGAATTCAAAGATTTCAATTTTTAAGATTCAATGTTCTTAAAAAATTGCAGAATTTTCATCATTGGTTTGGATTTTCGTGCTTTTTTTCTAATATTTATTTATTTTGTAAATAAATTTGTAAAATGTTTTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGATTTTCAATTTTTAAAGTTAT</pcr_primer_p1>
		<pcr_primer_p2>CCCAACAGTAGAAGAAGACTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCGATTTTCAATTTTTAAAGTTATTTTGTCTCCCCGAGAGGAGACGTTCCAAAATTTATAGCTAACGCCAAATTTCTTTGGGTCAGTTTCAATGTTTACCTCAAACTTGGGTAATTAAACAAACTACATCGGCGGGCTTCGCACACTAGTGGAAAACGAGCGGCCGACACCAATCGAGGCCCGCGTCGGCCACCGCATTTCGACAGCGTGCGCGCGCACACTGCTGGGTGAGTCTTCTTCTACTGTTGGG</canonical_amplicon>
		<polymorphic_amplicon>CCGATTTTCAATTTTTAAAGTTATTTTGTCTCCCCGAGAGGAGACGTTCCAAAATTTATAGCTAACGCCAAATTTCTTTGGGTCAGTTTCAATGTTTACCTCAAACTTGGGTAATTAAACMAACTACATCGGCGGGCTTCGCACACTAGTGGAAAACGAGCGGCCGACACCAATCGAGGCCCGCGTCGGCCACCGCATTTCGACAGCGTGCGCGCGCACACTGCTGGGTGAGTCTTCTTCTACTGTTGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37427</snp_id>
        <super_contig>c012101062.Contig1</super_contig>
        <contig_pos>107484</contig_pos>
        <strand></strand>
        <context>AGAGGTAGAT[G/A]TGATGCTTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTATTTCACTGATCCCTAGTAGAGTTAAAAGGGGAATGTAGAGGTAGAT</left_flank>
        <right_flank>TGATGCTTACGACCATATCACGTTGAATGCACGCCATCCCGTCCGATCTG</right_flank>
        <qual_score>50</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAGATGTGTGTGTATAAAATTGATATTGTAAAAATTTCAGAATCTAAGCCTAAAATTTTAAGAATTCACTAGAATTTAAATGATGACAATTCCGATCGTTTACAACCCTTTTACATGCATCGATTTTTCGATTTTCAATGGACCATAACTCCGGCATGCGTTGACCGATTTTCAATTTTTAAAGTTATTTTGTCTCCCCGAGAGGAGACGTTCCAAAATTTATAGCTAACGCCAAATTTCTTTGGGTCAGTTTCAATGTTTACCTCAAACTTGGGTAATTAAACAAACTACATCGGCGGGCTTCGCACACTAGTGGAAAACGAGCGGCCGACACCAATCGAGGCCCGCGTCGGCCACCGCATTTCGACAGCGTGCGCGCGCACACTGCTGGGTGAGTCTTCTTCTACTGTTGGGGGGACTGGGAGAATTCGCTCTTCTGCGTTTCGATTTATTTCACTGATCCCTAGTAGAGTTAAAAGGGGAATGTAGAGGTAGATGTGATGCTTACGACCATATCACGTTGAATGCACGCCATCCCGTCCGATCTGGCAAGTTAAGCAACGTTGAGTCCAGTTAGTACTTGGATCGGAGACGGCCTGGGAATCCTGGATGTTGTAAGCTTTTTGCTTTTTTTGTATTCAATTTCATAATATGAATTCAAAGATTTCAATTTTTAAGATTCAATGTTCTTAAAAAATTGCAGAATTTTCATCATTGGTTTGGATTTTCGTGCTTTTTTTCTAATATTTATTTATTTTGTAAATAAATTTGTAAAATGTTTTCCTCACAAATGAGAATTGTTGTCGAAAAATATAAAATTGTGTCAAATTCAATCAATTTCAATATGAAAAATTTGAATGTTCAAGATGCATTCGCGTTTTCTTCCCACCAAATTGCTGAGTTTCTGAAATAAATTGTGCATGAATCGACTGAAAATAGATGTGTGTGTATAAAATTTATATTGTAAAAATTTCAGAATCTAAGCCTAAAATTTTAAG</canonical>
            <polymorphic>AATAGATGTGTGTGTATAAAATTGATATTGTAAAAATTTCAGAATCTAAGCCTAAAATTTTAAGAATTCACTAGAATTTAAATGATGACAATTCCGATCGTTTACAACCCTTTTACATGCATCGATTTTTCGATTTTCAATGGACCATAACTCCGGCATGCGTTGACCGATTTTCAATTTTTAAAGTTATTTTGTCTCCCCGAGAGGAGACGTTCCAAAATTTATAGCTAACGCCAAATTTCTTTGGGTCAGTTTCAATGTTTACCTCAAACTTGGGTAATTAAACAAACTACATCGGCGGGCTTCGCACACTAGTGGAAAACGAGCGGCCGACACCAATCGAGGCCCGCGTCGGCCACCGCATTTCGACAGCGTGCGCGCGCACACTGCTGGGTGAGTCTTCTTCTACTGTTGGGGGGACTGGGAGAATTCGCTCTTCTGCGTTTCGATTTATTTCACTGATCCCTAGTAGAGTTAAAAGGGGAATGTAGAGGTAGATRTGATGCTTACGACCATATCACGTTGAATGCACGCCATCCCGTCCGATCTGGCAAGTTAAGCAACGTTGAGTCCAGTTAGTACTTGGATCGGAGACGGCCTGGGAATCCTGGATGTTGTAAGCTTTTTGCTTTTTTTGTATTCAATTTCATAATATGAATTCAAAGATTTCAATTTTTAAGATTCAATGTTCTTAAAAAATTGCAGAATTTTCATCATTGGTTTGGATTTTCGTGCTTTTTTTCTAATATTTATTTATTTTGTAAATAAATTTGTAAAATGTTTTCCTCACAAATGAGAATTGTTGTCGAAAAATATAAAATTGTGTCAAATTCAATCAATTTCAATATGAAAAATTTGAATGTTCAAGATGCATTCGCGTTTTCTTCCCACCAAATTGCTGAGTTTCTGAAATAAATTGTGCATGAATCGACTGAAAATAGATGTGTGTGTATAAAATTTATATTGTAAAAATTTCAGAATCTAAGCCTAAAATTTTAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>239 203 65 62 56 55 50 44 36 31 25 23 18 18 18 11 10 10 8 6 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>239 203 65 62 62 56 55 50 36 31 25 23 18 18 11 10 10 8 6 2 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGGGTGAGTCTTCTTCTACTG</pcr_primer_p1>
		<pcr_primer_p2>AAAAGCAAAAAGCTTACAACAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CTGGGTGAGTCTTCTTCTACTGTTGGGGGGACTGGGAGAATTCGCTCTTCTGCGTTTCGATTTATTTCACTGATCCCTAGTAGAGTTAAAAGGGGAATGTAGAGGTAGATGTGATGCTTACGACCATATCACGTTGAATGCACGCCATCCCGTCCGATCTGGCAAGTTAAGCAACGTTGAGTCCAGTTAGTACTTGGATCGGAGACGGCCTGGGAATCCTGGATGTTGTAAGCTTTTTGCTTTT</canonical_amplicon>
		<polymorphic_amplicon>CTGGGTGAGTCTTCTTCTACTGTTGGGGGGACTGGGAGAATTCGCTCTTCTGCGTTTCGATTTATTTCACTGATCCCTAGTAGAGTTAAAAGGGGAATGTAGAGGTAGATRTGATGCTTACGACCATATCACGTTGAATGCACGCCATCCCGTCCGATCTGGCAAGTTAAGCAACGTTGAGTCCAGTTAGTACTTGGATCGGAGACGGCCTGGGAATCCTGGATGTTGTAAGCTTTTTGCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37428</snp_id>
        <super_contig>c012101062.Contig1</super_contig>
        <contig_pos>108643</contig_pos>
        <strand>+</strand>
        <context>TCATCATTGG[G/T]TTGGATTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTTTTAAGATTCAATGTTCTTAAAAAATTGCAGAATTTTCATCATTGG</left_flank>
        <right_flank>TTGGATTTTCGCGCTTTTTTTCTAATATTTATTTATTTTGTAAATAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAGCTAACGCCAAATTTCTTTGGGTCAGTTTCAATGTTTACCTCAAACTTGGGTAATTAAACCAACTACATCGGCGGGCTTCGCACACTAGTGGAAAACGAGCGGCCGACACCAATCGAGGCCCGCGTCGGCCACCGCATTTCGACAGCGTGCGCGCGCACACTGCTGGGTGAGTCTTCTTCTACTGTTGGGGGGACTGGGAGAATTCGCTCTTCTGCGTTTCGATTTATTTCACTGATCCCTAGTAGAGTTAAAAGGGGAATGTAGAGGTAGATGTGATGCTTACGACCATATCACGTTGAATGCACGCCATCCCGTCCGATCTGGCAAGTTAAGCAACGTTGAGTCCAGTTAGTACTTGGATCGGAGACGGCCTGGGAATCCTGGATGTTGTAAGCTTTTTGCTTTTTTTGTATTCAATTTCATAAATATGAATTCAAAGATTTCAATTTTTAAGATTCAATGTTCTTAAAAAATTGCAGAATTTTCATCATTGGGTTGGATTTTCGCGCTTTTTTTCTAATATTTATTTATTTTGTAAATAAATTTGTAAAATGTTTTCCTCACTAATGAGAATTGATGTCGAAAATATAAAATATGTGTCAAATTCAATCAATTCCAATATGAAAAATTTGAATGTTCAAGATGCATT</canonical>
            <polymorphic>TATAGCTAACGCCAAATTTCTTTGGGTCAGTTTCAATGTTTACCTCAAACTTGGGTAATTAAACCAACTACATCGGCGGGCTTCGCACACTAGTGGAAAACGAGCGGCCGACACCAATCGAGGCCCGCGTCGGCCACCGCATTTCGACAGCGTGCGCGCGCACACTGCTGGGTGAGTCTTCTTCTACTGTTGGGGGGACTGGGAGAATTCGCTCTTCTGCGTTTCGATTTATTTCACTGATCCCTAGTAGAGTTAAAAGGGGAATGTAGAGGTAGATGTGATGCTTACGACCATATCACGTTGAATGCACGCCATCCCGTCCGATCTGGCAAGTTAAGCAACGTTGAGTCCAGTTAGTACTTGGATCGGAGACGGCCTGGGAATCCTGGATGTTGTAAGCTTTTTGCTTTTTTTGTATTCAATTTCATAAATATGAATTCAAAGATTTCAATTTTTAAGATTCAATGTTCTTAAAAAATTGCAGAATTTTCATCATTGGKTTGGATTTTCGCGCTTTTTTTCTAATATTTATTTATTTTGTAAATAAATTTGTAAAATGTTTTCCTCACTAATGAGAATTGATGTCGAAAATATAAAATATGTGTCAAATTCAATCAATTCCAATATGAAAAATTTGAATGTTCAAGATGCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGTTGAGTCCAGTTAGTACTTG</pcr_primer_p1>
		<pcr_primer_p2>TTTCGACATCAATTCTCATTAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGTTGAGTCCAGTTAGTACTTGGATCGGAGACGGCCTGGGAATCCTGGATGTTGTAAGCTTTTTGCTTTTTTTGTATTCAATTTCATAAATATGAATTCAAAGATTTCAATTTTTAAGATTCAATGTTCTTAAAAAATTGCAGAATTTTCATCATTGGGTTGGATTTTCGCGCTTTTTTTCTAATATTTATTTATTTTGTAAATAAATTTGTAAAATGTTTTCCTCACTAATGAGAATTGATGTCGAAA</canonical_amplicon>
		<polymorphic_amplicon>ACGTTGAGTCCAGTTAGTACTTGGATCGGAGACGGCCTGGGAATCCTGGATGTTGTAAGCTTTTTGCTTTTTTTGTATTCAATTTCATAAATATGAATTCAAAGATTTCAATTTTTAAGATTCAATGTTCTTAAAAAATTGCAGAATTTTCATCATTGGKTTGGATTTTCGCGCTTTTTTTCTAATATTTATTTATTTTGTAAATAAATTTGTAAAATGTTTTCCTCACTAATGAGAATTGATGTCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37429</snp_id>
        <super_contig>c012101062.Contig1</super_contig>
        <contig_pos>108655</contig_pos>
        <strand>+</strand>
        <context>TGGATTTTCG[C/T]GCtttttttc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAATGTTCTTAAAAAATTGCAGAATTTTCATCATTGGGTTGGATTTTCG</left_flank>
        <right_flank>GCTTTTTTTCTAATATTTATTTATTTTGTAAATAAATTTGTAAAATGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAATTTCTTTGGGTCAGTTTCAATGTTTACCTCAAACTTGGGTAATTAAACCAACTACATCGGCGGGCTTCGCACACTAGTGGAAAACGAGCGGCCGACACCAATCGAGGCCCGCGTCGGCCACCGCATTTCGACAGCGTGCGCGCGCACACTGCTGGGTGAGTCTTCTTCTACTGTTGGGGGGACTGGGAGAATTCGCTCTTCTGCGTTTCGATTTATTTCACTGATCCCTAGTAGAGTTAAAAGGGGAATGTAGAGGTAGATGTGATGCTTACGACCATATCACGTTGAATGCACGCCATCCCGTCCGATCTGGCAAGTTAAGCAACGTTGAGTCCAGTTAGTACTTGGATCGGAGACGGCCTGGGAATCCTGGATGTTGTAAGCTTTTTGCTTTTTTTGTATTCAATTTCATAAATATGAATTCAAAGATTTCAATTTTTAAGATTCAATGTTCTTAAAAAATTGCAGAATTTTCATCATTGGGTTGGATTTTCGCGCTTTTTTTCTAATATTTATTTATTTTGTAAATAAATTTGTAAAATGTTTTCCTCACTAATGAGAATTGATGTCGAAAATATAAAATATGTGTCAAATTCAATCAATTCCAATATGAAAAATTTGAATGTTCAAGATGCATT</canonical>
            <polymorphic>CAAATTTCTTTGGGTCAGTTTCAATGTTTACCTCAAACTTGGGTAATTAAACCAACTACATCGGCGGGCTTCGCACACTAGTGGAAAACGAGCGGCCGACACCAATCGAGGCCCGCGTCGGCCACCGCATTTCGACAGCGTGCGCGCGCACACTGCTGGGTGAGTCTTCTTCTACTGTTGGGGGGACTGGGAGAATTCGCTCTTCTGCGTTTCGATTTATTTCACTGATCCCTAGTAGAGTTAAAAGGGGAATGTAGAGGTAGATGTGATGCTTACGACCATATCACGTTGAATGCACGCCATCCCGTCCGATCTGGCAAGTTAAGCAACGTTGAGTCCAGTTAGTACTTGGATCGGAGACGGCCTGGGAATCCTGGATGTTGTAAGCTTTTTGCTTTTTTTGTATTCAATTTCATAAATATGAATTCAAAGATTTCAATTTTTAAGATTCAATGTTCTTAAAAAATTGCAGAATTTTCATCATTGGGTTGGATTTTCGYGCTTTTTTTCTAATATTTATTTATTTTGTAAATAAATTTGTAAAATGTTTTCCTCACTAATGAGAATTGATGTCGAAAATATAAAATATGTGTCAAATTCAATCAATTCCAATATGAAAAATTTGAATGTTCAAGATGCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>353 143 115 29 2</canonical_bands>
                <polymorphic_bands>496 115 29 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>353 144 141 2 2</canonical_bands>
                <polymorphic_bands>494 144 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGTTGAGTCCAGTTAGTACTTG</pcr_primer_p1>
		<pcr_primer_p2>TTTCGACATCAATTCTCATTAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGTTGAGTCCAGTTAGTACTTGGATCGGAGACGGCCTGGGAATCCTGGATGTTGTAAGCTTTTTGCTTTTTTTGTATTCAATTTCATAAATATGAATTCAAAGATTTCAATTTTTAAGATTCAATGTTCTTAAAAAATTGCAGAATTTTCATCATTGGGTTGGATTTTCGCGCTTTTTTTCTAATATTTATTTATTTTGTAAATAAATTTGTAAAATGTTTTCCTCACTAATGAGAATTGATGTCGAAA</canonical_amplicon>
		<polymorphic_amplicon>ACGTTGAGTCCAGTTAGTACTTGGATCGGAGACGGCCTGGGAATCCTGGATGTTGTAAGCTTTTTGCTTTTTTTGTATTCAATTTCATAAATATGAATTCAAAGATTTCAATTTTTAAGATTCAATGTTCTTAAAAAATTGCAGAATTTTCATCATTGGGTTGGATTTTCGYGCTTTTTTTCTAATATTTATTTATTTTGTAAATAAATTTGTAAAATGTTTTCCTCACTAATGAGAATTGATGTCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37430</snp_id>
        <super_contig>c012201017.Contig1</super_contig>
        <contig_pos>28375</contig_pos>
        <strand>+</strand>
        <context>TTCATCAGTA[C/T]GATAAGATGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCGCTGAGAACATATTTTGCCCTCTGAAAAACACACTCATTCATCAGTA</left_flank>
        <right_flank>GATAAGATGTTTTTACTCCCAAGAACGTACAATTATACTAAAAAGGGGGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATTTATCATAATATCACCAATATTTCTTTAGTTTACAAAATTTCAATATCTCTTCAAGGAACCAAGATAATTGAGTTCAAATGTACGTCTGAAGTGAGTTTTAAAGCTAATACGGCAACAATGAACTGAACCTTTGGAAATCTGTGATTTTTTTGAATATGGGTATGTTTGCAGTCTCCTCTTAGTAGATATGTAGAAGACCATTTTGAAACATGAATGTTCTTAGATTATCGTTTTCAGTTTTTTTGAAATCTTTCCAAAATCAGCAATTTCCCATTCTGATATGTCAAGCCTCTTTATCCGCAAAAAAATCTCCTCTCCCGGAAATTGAAAAAAAAATATAGTCCACTCATATTTTTTTTGTTTGGTCTATATTATTCTCTGTGTGGCAGCAAAATTTATTTGTGTGTGTCAAACCTCTGCTGTCCTTATTATCTCTCGCGCACTCTCGCTGAGAACATATTTTGCCCTCTGAAAAACACACTCATTCATCAGTATGATAAGATGTTTTTACTCCCAAGAACGTACAATTATACTAAAAAGGGGGTTATTGTTTTGGAACTGAGGGACGTTGCTCTAGATGCTACTTCGGATTTTGTTGGAAGCACTATAATTGAGGAAAAGAAGTGGTGAGTGTTTTCAGTGTTTCTTGTTGATAAGACTGATTTTGAAACTGGGGGGACAGAAATGGTTGTAATCAAATTCGGAATTCCAAAGAATCCGATATTTTCGATTTTTTAATTTTTTTTTGAGTTTAGGTTTTTTTCCATAAAAGTTTCGCGCATTGTGATGGGAACATGATATCACAAAGTTTCAAAATTTTCAAAATTTGAATATTCCGAATTTCGAAACATCAACGAGGGAGGGAGGGATGACTTTCTTGAAATTTCGCTATCATTTAATCACTGATAACTTTTAGGACACTGCGCTTCTATTATGATAAAAAAGCTCAAGCGTTCAAATCGGTCATCAAACATAATGGTGAAATAGGGATGCGG</canonical>
            <polymorphic>TTATTTATCATAATATCACCAATATTTCTTTAGTTTACAAAATTTCAATATCTCTTCAAGGAACCAAGATAATTGAGTTCAAATGTACGTCTGAAGTGAGTTTTAAAGCTAATACGGCAACAATGAACTGAACCTTTGGAAATCTGTGATTTTTTTGAATATGGGTATGTTTGCAGTCTCCTCTTAGTAGATATGTAGAAGACCATTTTGAAACATGAATGTTCTTAGATTATCGTTTTCAGTTTTTTTGAAATCTTTCCAAAATCAGCAATTTCCCATTCTGATATGTCAAGCCTCTTTATCCGCAAAAAAATCTCCTCTCCCGGAAATTGAAAAAAAAATATAGTCCACTCATATTTTTTTTGTTTGGTCTATATTATTCTCTGTGTGGCAGCAAAATTTATTTGTGTGTGTCAAACCTCTGCTGTCCTTATTATCTCTCGCGCACTCTCGCTGAGAACATATTTTGCCCTCTGAAAAACACACTCATTCATCAGTAYGATAAGATGTTTTTACTCCCAAGAACGTACAATTATACTAAAAAGGGGGTTATTGTTTTGGAACTGAGGGACGTTGCTCTAGATGCTACTTCGGATTTTGTTGGAAGCACTATAATTGAGGAAAAGAAGTGGTGAGTGTTTTCAGTGTTTCTTGTTGATAAGACTGATTTTGAAACTGGGGGGACAGAAATGGTTGTAATCAAATTCGGAATTCCAAAGAATCCGATATTTTCGATTTTTTAATTTTTTTTTGAGTTTAGGTTTTTTTCCATAAAAGTTTCGCGCATTGTGATGGGAACATGATATCACAAAGTTTCAAAATTTTCAAAATTTGAATATTCCGAATTTCGAAACATCAACGAGGGAGGGAGGGATGACTTTCTTGAAATTTCGCTATCATTTAATCACTGATAACTTTTAGGACACTGCGCTTCTATTATGATAAAAAAGCTCAAGCGTTCAAATCGGTCATCAAACATAATGGTGAAATAGGGATGCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>496 293 192 19</canonical_bands>
                <polymorphic_bands>789 192 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAATTTATTTGTGTGTGTCAA</pcr_primer_p1>
		<pcr_primer_p2>GAAAACACTCACCACTTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAAAATTTATTTGTGTGTGTCAAACCTCTGCTGTCCTTATTATCTCTCGCGCACTCTCGCTGAGAACATATTTTGCCCTCTGAAAAACACACTCATTCATCAGTATGATAAGATGTTTTTACTCCCAAGAACGTACAATTATACTAAAAAGGGGGTTATTGTTTTGGAACTGAGGGACGTTGCTCTAGATGCTACTTCGGATTTTGTTGGAAGCACTATAATTGAGGAAAAGAAGTGGTGAGTGTTTTC</canonical_amplicon>
		<polymorphic_amplicon>CAAAATTTATTTGTGTGTGTCAAACCTCTGCTGTCCTTATTATCTCTCGCGCACTCTCGCTGAGAACATATTTTGCCCTCTGAAAAACACACTCATTCATCAGTAYGATAAGATGTTTTTACTCCCAAGAACGTACAATTATACTAAAAAGGGGGTTATTGTTTTGGAACTGAGGGACGTTGCTCTAGATGCTACTTCGGATTTTGTTGGAAGCACTATAATTGAGGAAAAGAAGTGGTGAGTGTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37431</snp_id>
        <super_contig>c012201017.Contig1</super_contig>
        <contig_pos>28668</contig_pos>
        <strand>+</strand>
        <context>CGCATTGTGA[A/T]GGGAACATGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTTTTTTGAGTTTAGGTTTTTTTCCATAAAAGTTTCGCGCATTGTGA</left_flank>
        <right_flank>GGGAACATGATATCACAAAGTTTCAAAATTTTCAAAATTTGAATATTCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTCTTTATCCGCAAAAAAATCTCCTCTCCCGGAAATTGAAAAAAAAATATAGTCCACTCATATTTTTTTTGTTTGGTCTATATTATTCTCTGTGTGGCAGCAAAATTTATTTGTGTGTGTCAAACCTCTGCTGTCCTTATTATCTCTCGCGCACTCTCGCTGAGAACATATTTTGCCCTCTGAAAAACACACTCATTCATCAGTATGATAAGATGTTTTTACTCCCAAGAACGTACAATTATACTAAAAAGGGGGTTATTGTTTTGGAACTGAGGGACGTTGCTCTAGATGCTACTTCGGATTTTGTTGGAAGCACTATAATTGAGGAAAAGAAGTGGTGAGTGTTTTCAGTGTTTCTTGTTGATAAGACTGATTTTGAAACTGGGGGGACAGAAATGGTTGTAATCAAATTCGGAATTCCAAAGAATCCGATATTTTCGATTTTTTAATTTTTTTTTGAGTTTAGGTTTTTTTCCATAAAAGTTTCGCGCATTGTGATGGGAACATGATATCACAAAGTTTCAAAATTTTCAAAATTTGAATATTCCGAATTTCGAAACATCAACGAGGGAGGGAGGGATGACTTTCTTGAAATTTCGCTATCATTTAATCACTGATAACTTTTAGGACACTGCGCTTCTATTATGATAAAAAAGCTCAAGCGTTCAAATCGGTCATCAAACATAATGGTGAAATAGGGATGCGGAAGATTGCGGTGTCGCTGAAAGTGACTCCGTTTATCCGAGAAACAAGAAAACTACGTCCCAAAGTCATTGATAAAGCGAGGTCCGACGAATCGCAGTCGGGGATACATGAATTATATCCCCTCGACAAGAAGAAAATGTTCGAAAAAATGGTGACAGAGGAGAAGTATTGCAAGTTGGAAGTAACCGCAGAAATACTTCTCATCCCTCTAATAAAGTTAATGGTTCCAAGAAATCGCTTCGTATTCGAAAAATCAAAACTAGCCAACGCATGTGGCTTTTTGGCCAAGAAGTT</canonical>
            <polymorphic>CCTCTTTATCCGCAAAAAAATCTCCTCTCCCGGAAATTGAAAAAAAAATATAGTCCACTCATATTTTTTTTGTTTGGTCTATATTATTCTCTGTGTGGCAGCAAAATTTATTTGTGTGTGTCAAACCTCTGCTGTCCTTATTATCTCTCGCGCACTCTCGCTGAGAACATATTTTGCCCTCTGAAAAACACACTCATTCATCAGTATGATAAGATGTTTTTACTCCCAAGAACGTACAATTATACTAAAAAGGGGGTTATTGTTTTGGAACTGAGGGACGTTGCTCTAGATGCTACTTCGGATTTTGTTGGAAGCACTATAATTGAGGAAAAGAAGTGGTGAGTGTTTTCAGTGTTTCTTGTTGATAAGACTGATTTTGAAACTGGGGGGACAGAAATGGTTGTAATCAAATTCGGAATTCCAAAGAATCCGATATTTTCGATTTTTTAATTTTTTTTTGAGTTTAGGTTTTTTTCCATAAAAGTTTCGCGCATTGTGAWGGGAACATGATATCACAAAGTTTCAAAATTTTCAAAATTTGAATATTCCGAATTTCGAAACATCAACGAGGGAGGGAGGGATGACTTTCTTGAAATTTCGCTATCATTTAATCACTGATAACTTTTAGGACACTGCGCTTCTATTATGATAAAAAAGCTCAAGCGTTCAAATCGGTCATCAAACATAATGGTGAAATAGGGATGCGGAAGATTGCGGTGTCGCTGAAAGTGACTCCGTTTATCCGAGAAACAAGAAAACTACGTCCCAAAGTCATTGATAAAGCGAGGTCCGACGAATCGCAGTCGGGGATACATGAATTATATCCCCTCGACAAGAAGAAAATGTTCGAAAAAATGGTGACAGAGGAGAAGTATTGCAAGTTGGAAGTAACCGCAGAAATACTTCTCATCCCTCTAATAAAGTTAATGGTTCCAAGAAATCGCTTCGTATTCGAAAAATCAAAACTAGCCAACGCATGTGGCTTTTTGGCCAAGAAGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>312 293 203 192</canonical_bands>
                <polymorphic_bands>485 312 203</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATAAGACTGATTTTGAAACTGG</pcr_primer_p1>
		<pcr_primer_p2>TTAAATGATAGCGAAATTTCAAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATAAGACTGATTTTGAAACTGGGGGGACAGAAATGGTTGTAATCAAATTCGGAATTCCAAAGAATCCGATATTTTCGATTTTTTAATTTTTTTTTGAGTTTAGGTTTTTTTCCATAAAAGTTTCGCGCATTGTGATGGGAACATGATATCACAAAGTTTCAAAATTTTCAAAATTTGAATATTCCGAATTTCGAAACATCAACGAGGGAGGGAGGGATGACTTTCTTGAAATTTCGCTATCATTTAA</canonical_amplicon>
		<polymorphic_amplicon>GATAAGACTGATTTTGAAACTGGGGGGACAGAAATGGTTGTAATCAAATTCGGAATTCCAAAGAATCCGATATTTTCGATTTTTTAATTTTTTTTTGAGTTTAGGTTTTTTTCCATAAAAGTTTCGCGCATTGTGAWGGGAACATGATATCACAAAGTTTCAAAATTTTCAAAATTTGAATATTCCGAATTTCGAAACATCAACGAGGGAGGGAGGGATGACTTTCTTGAAATTTCGCTATCATTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37432</snp_id>
        <super_contig>c012201017.Contig1</super_contig>
        <contig_pos>42185</contig_pos>
        <strand></strand>
        <context>gtcagaaaat[G/T]tcagaagata</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTGAAGCCCTACAAAAGTATACCAGAATTGTTCAATTTGTCAGAAAAT</left_flank>
        <right_flank>TCAGAAGATACTAAACAAAACTAGATCTTCATTTTTGTAATTGGCATTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAATCCAATATCAAAACATTTTCCAGTTTCTAAACTTCGCACAAATATTTGGTGTTTACATCTGCTTTGGCTACTGTATTTCTTTCTTGTAGTACATATGTCGAGAGACAGATATTTGGATCCTTGCCGTTTCCCGGCGCCTCTGTGAGCAGACCAAATTTTGACAGTTTTGCCCTTAACTAAATTTCAGTTCCACATATAATTTCAATACGATATCTAGAAAAATCTTCGTAAAAACATTGTAGTTCTTCCGGATCACTGATTTTTTGCTTTTGATTCGTCATACTTCACTATTTTTTTGAAACTGAGCATATTGAGAAAAAATGTTTGTTGATTTGAGCAGATTTCTAATTCTGTAGATAGTGTTGCAGAAATTTTCTAGGATATAATGGGAGGAAAAAAAAAGTAAATGTTTGATGCGGAACTTGTGAAGCTGAAGTTGGTCATTTTTGAAGCCCTACAAAAGTATACCAGAATTGTTCAATTTGTCAGAAAATGTCAGAAGATACTAAACAAAACTAGATCTTCATTTTTGTAATTGGCATTTTCTTTGGCTGATTCCAGTCTCAGGAGATATGACGTTGGTTATGTATTTAACCAATATAAACAGTTTAAATTTTTTTCAGTGGAAGGTAGTCATTTTTGAAACACTACAAAAGTATTCCAGAATTGTTCCATTTGTCAGAAGATTTCAGAAAATACTAAACAAAACTAGATTTTTATTTTTTCAATTGATAACTTCTTTGCCTAATTCCAGTCTGAGGAGATACGTGGTACGTGGAAAAACGTTCCGGAAATGCCTCACTGCTGTGCCTTTAAAAACAGCCTAATATTGCTTTTCGATATTTACAAAAATGTGTCAGATATAAAAATGGAGATCTATTTCCGATTTGTGAATTCTGAAATGTTCAGAAAAAGTAAACACGTCTGGACTACTTCTGTAGATTTTTTAAAATGCTTACATTGTTTTTGATGTCATGCAAAAAGTCAGAATATCC</canonical>
            <polymorphic>TAGAATCCAATATCAAAACATTTTCCAGTTTCTAAACTTCGCACAAATATTTGGTGTTTACATCTGCTTTGGCTACTGTATTTCTTTCTTGTAGTACATATGTCGAGAGACAGATATTTGGATCCTTGCCGTTTCCCGGCGCCTCTGTGAGCAGACCAAATTTTGACAGTTTTGCCCTTAACTAAATTTCAGTTCCACATATAATTTCAATACGATATCTAGAAAAATCTTCGTAAAAACATTGTAGTTCTTCCGGATCACTGATTTTTTGCTTTTGATTCGTCATACTTCACTATTTTTTTGAAACTGAGCATATTGAGAAAAAATGTTTGTTGATTTGAGCAGATTTCTAATTCTGTAGATAGTGTTGCAGAAATTTTCTAGGATATAATGGGAGGAAAAAAAAAGTAAATGTTTGATGCGGAACTTGTGAAGCTGAAGTTGGTCATTTTTGAAGCCCTACAAAAGTATACCAGAATTGTTCAATTTGTCAGAAAATKTCAGAAGATACTAAACAAAACTAGATCTTCATTTTTGTAATTGGCATTTTCTTTGGCTGATTCCAGTCTCAGGAGATATGACGTTGGTTATGTATTTAACCAATATAAACAGTTTAAATTTTTTTCAGTGGAAGGTAGTCATTTTTGAAACACTACAAAAGTATTCCAGAATTGTTCCATTTGTCAGAAGATTTCAGAAAATACTAAACAAAACTAGATTTTTATTTTTTCAATTGATAACTTCTTTGCCTAATTCCAGTCTGAGGAGATACGTGGTACGTGGAAAAACGTTCCGGAAATGCCTCACTGCTGTGCCTTTAAAAACAGCCTAATATTGCTTTTCGATATTTACAAAAATGTGTCAGATATAAAAATGGAGATCTATTTCCGATTTGTGAATTCTGAAATGTTCAGAAAAAGTAAACACGTCTGGACTACTTCTGTAGATTTTTTAAAATGCTTACATTGTTTTTGATGTCATGCAAAAAGTCAGAATATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATGTTTGATGCGGAACT</pcr_primer_p1>
		<pcr_primer_p2>GTAGTCCAGACGTGTTTACTTTT</pcr_primer_p2>
		<pcr_amplicon_size>530</pcr_amplicon_size>
		<canonical_amplicon>TAAATGTTTGATGCGGAACTTGTGAAGCTGAAGTTGGTCATTTTTGAAGCCCTACAAAAGTATACCAGAATTGTTCAATTTGTCAGAAAATGTCAGAAGATACTAAACAAAACTAGATCTTCATTTTTGTAATTGGCATTTTCTTTGGCTGATTCCAGTCTCAGGAGATATGACGTTGGTTATGTATTTAACCAATATAAACAGTTTAAATTTTTTTCAGTGGAAGGTAGTCATTTTTGAAACACTACAAAAGTATTCCAGAATTGTTCCATTTGTCAGAAGATTTCAGAAAATACTAAACAAAACTAGATTTTTATTTTTTCAATTGATAACTTCTTTGCCTAATTCCAGTCTGAGGAGATACGTGGTACGTGGAAAAACGTTCCGGAAATGCCTCACTGCTGTGCCTTTAAAAACAGCCTAATATTGCTTTTCGATATTTACAAAAATGTGTCAGATATAAAAATGGAGATCTATTTCCGATTTGTGAATTCTGAAATGTTCAGAAAAAGTAAACACGTCTGGACTAC</canonical_amplicon>
		<polymorphic_amplicon>TAAATGTTTGATGCGGAACTTGTGAAGCTGAAGTTGGTCATTTTTGAAGCCCTACAAAAGTATACCAGAATTGTTCAATTTGTCAGAAAATKTCAGAAGATACTAAACAAAACTAGATCTTCATTTTTGTAATTGGCATTTTCTTTGGCTGATTCCAGTCTCAGGAGATATGACGTTGGTTATGTATTTAACCAATATAAACAGTTTAAATTTTTTTCAGTGGAAGGTAGTCATTTTTGAAACACTACAAAAGTATTCCAGAATTGTTCCATTTGTCAGAAGATTTCAGAAAATACTAAACAAAACTAGATTTTTATTTTTTCAATTGATAACTTCTTTGCCTAATTCCAGTCTGAGGAGATACGTGGTACGTGGAAAAACGTTCCGGAAATGCCTCACTGCTGTGCCTTTAAAAACAGCCTAATATTGCTTTTCGATATTTACAAAAATGTGTCAGATATAAAAATGGAGATCTATTTCCGATTTGTGAATTCTGAAATGTTCAGAAAAAGTAAACACGTCTGGACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37433</snp_id>
        <super_contig>c012201017.Contig1</super_contig>
        <contig_pos>42363</contig_pos>
        <strand></strand>
        <context>agaattgttc[C/A]atttgtcaga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GTGGAAGGTAGTCATTTTTGAAACACTACAAAAGTATTCCAGAATTGTTC</left_flank>
        <right_flank>ATTTGTCAGAAGATTTCAGAAAATACTAAACAAAACTAGATTTTTATTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACTAAATTTCAGTTCCACATATAATTTCAATACGATATCTAGAAAAATCTTCGTAAAAACATTGTAGTTCTTCCGGATCACTGATTTTTTGCTTTTGATTCGTCATACTTCACTATTTTTTTGAAACTGAGCATATTGAGAAAAAATGTTTGTTGATTTGAGCAGATTTCTAATTCTGTAGATAGTGTTGCAGAAATTTTCTAGGATATAATGGGAGGAAAAAAAAAGTAAATGTTTGATGCGGAACTTGTGAAGCTGAAGTTGGTCATTTTTGAAGCCCTACAAAAGTATACCAGAATTGTTCAATTTGTCAGAAAATGTCAGAAGATACTAAACAAAACTAGATCTTCATTTTTGTAATTGGCATTTTCTTTGGCTGATTCCAGTCTCAGGAGATATGACGTTGGTTATGTATTTAACCAATATAAACAGTTTAAATTTTTTTCAGTGGAAGGTAGTCATTTTTGAAACACTACAAAAGTATTCCAGAATTGTTCCATTTGTCAGAAGATTTCAGAAAATACTAAACAAAACTAGATTTTTATTTTTTCAATTGATAACTTCTTTGCCTAATTCCAGTCTGAGGAGATACGTGGTACGTGGAAAAACGTTCCGGAAATGCCTCACTGCTGTGCCTTTAAAAACAGCCTAATATTGCTTTTCGATATTTACAAAAATGTGTCAGATATAAAAATGGAGATCTATTTCCGATTTGTGAATTCTGAAATGTTCAGAAAAAGTAAACACGTCTGGACTACTTCTGTAGATTTTTTAAAATGCTTACATTGTTTTTGATGTCATGCAAAAAGTCAGAATATCCAGTAACACCAATAGTTTTTTTCTTTTGTATCCACTTGCTCTAATGTAATTTCATTAACAAATTATTAACACACTTTCATTCAATTAAGCGCAAATAAACATAGTAATCATTCATTTATGATGTTCACAAGAACTGGTTCTGGAGTACACTCAAAAATCTCTATTGGGCCCTTTTTTTC</canonical>
            <polymorphic>TAACTAAATTTCAGTTCCACATATAATTTCAATACGATATCTAGAAAAATCTTCGTAAAAACATTGTAGTTCTTCCGGATCACTGATTTTTTGCTTTTGATTCGTCATACTTCACTATTTTTTTGAAACTGAGCATATTGAGAAAAAATGTTTGTTGATTTGAGCAGATTTCTAATTCTGTAGATAGTGTTGCAGAAATTTTCTAGGATATAATGGGAGGAAAAAAAAAGTAAATGTTTGATGCGGAACTTGTGAAGCTGAAGTTGGTCATTTTTGAAGCCCTACAAAAGTATACCAGAATTGTTCAATTTGTCAGAAAATGTCAGAAGATACTAAACAAAACTAGATCTTCATTTTTGTAATTGGCATTTTCTTTGGCTGATTCCAGTCTCAGGAGATATGACGTTGGTTATGTATTTAACCAATATAAACAGTTTAAATTTTTTTCAGTGGAAGGTAGTCATTTTTGAAACACTACAAAAGTATTCCAGAATTGTTCMATTTGTCAGAAGATTTCAGAAAATACTAAACAAAACTAGATTTTTATTTTTTCAATTGATAACTTCTTTGCCTAATTCCAGTCTGAGGAGATACGTGGTACGTGGAAAAACGTTCCGGAAATGCCTCACTGCTGTGCCTTTAAAAACAGCCTAATATTGCTTTTCGATATTTACAAAAATGTGTCAGATATAAAAATGGAGATCTATTTCCGATTTGTGAATTCTGAAATGTTCAGAAAAAGTAAACACGTCTGGACTACTTCTGTAGATTTTTTAAAATGCTTACATTGTTTTTGATGTCATGCAAAAAGTCAGAATATCCAGTAACACCAATAGTTTTTTTCTTTTGTATCCACTTGCTCTAATGTAATTTCATTAACAAATTATTAACACACTTTCATTCAATTAAGCGCAAATAAACATAGTAATCATTCATTTATGATGTTCACAAGAACTGGTTCTGGAGTACACTCAAAAATCTCTATTGGGCCCTTTTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATGTTTGATGCGGAACT</pcr_primer_p1>
		<pcr_primer_p2>GTAGTCCAGACGTGTTTACTTTT</pcr_primer_p2>
		<pcr_amplicon_size>530</pcr_amplicon_size>
		<canonical_amplicon>TAAATGTTTGATGCGGAACTTGTGAAGCTGAAGTTGGTCATTTTTGAAGCCCTACAAAAGTATACCAGAATTGTTCAATTTGTCAGAAAATGTCAGAAGATACTAAACAAAACTAGATCTTCATTTTTGTAATTGGCATTTTCTTTGGCTGATTCCAGTCTCAGGAGATATGACGTTGGTTATGTATTTAACCAATATAAACAGTTTAAATTTTTTTCAGTGGAAGGTAGTCATTTTTGAAACACTACAAAAGTATTCCAGAATTGTTCCATTTGTCAGAAGATTTCAGAAAATACTAAACAAAACTAGATTTTTATTTTTTCAATTGATAACTTCTTTGCCTAATTCCAGTCTGAGGAGATACGTGGTACGTGGAAAAACGTTCCGGAAATGCCTCACTGCTGTGCCTTTAAAAACAGCCTAATATTGCTTTTCGATATTTACAAAAATGTGTCAGATATAAAAATGGAGATCTATTTCCGATTTGTGAATTCTGAAATGTTCAGAAAAAGTAAACACGTCTGGACTAC</canonical_amplicon>
		<polymorphic_amplicon>TAAATGTTTGATGCGGAACTTGTGAAGCTGAAGTTGGTCATTTTTGAAGCCCTACAAAAGTATACCAGAATTGTTCAATTTGTCAGAAAATGTCAGAAGATACTAAACAAAACTAGATCTTCATTTTTGTAATTGGCATTTTCTTTGGCTGATTCCAGTCTCAGGAGATATGACGTTGGTTATGTATTTAACCAATATAAACAGTTTAAATTTTTTTCAGTGGAAGGTAGTCATTTTTGAAACACTACAAAAGTATTCCAGAATTGTTCMATTTGTCAGAAGATTTCAGAAAATACTAAACAAAACTAGATTTTTATTTTTTCAATTGATAACTTCTTTGCCTAATTCCAGTCTGAGGAGATACGTGGTACGTGGAAAAACGTTCCGGAAATGCCTCACTGCTGTGCCTTTAAAAACAGCCTAATATTGCTTTTCGATATTTACAAAAATGTGTCAGATATAAAAATGGAGATCTATTTCCGATTTGTGAATTCTGAAATGTTCAGAAAAAGTAAACACGTCTGGACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37434</snp_id>
        <super_contig>c012201017.Contig1</super_contig>
        <contig_pos>42477</contig_pos>
        <strand></strand>
        <context>ggaaaaacgt[T/G]ccggaaatgc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTCTTTGCCTAATTCCAGTCTGAGGAGATACGTGGTACGTGGAAAAACGT</left_flank>
        <right_flank>CCGGAAATGCCTCACTGCTGTGCCTTTAAAAACAGCCTAATATTGCTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATTTTTTTGAAACTGAGCATATTGAGAAAAAATGTTTGTTGATTTGAGCAGATTTCTAATTCTGTAGATAGTGTTGCAGAAATTTTCTAGGATATAATGGGAGGAAAAAAAAAGTAAATGTTTGATGCGGAACTTGTGAAGCTGAAGTTGGTCATTTTTGAAGCCCTACAAAAGTATACCAGAATTGTTCAATTTGTCAGAAAATGTCAGAAGATACTAAACAAAACTAGATCTTCATTTTTGTAATTGGCATTTTCTTTGGCTGATTCCAGTCTCAGGAGATATGACGTTGGTTATGTATTTAACCAATATAAACAGTTTAAATTTTTTTCAGTGGAAGGTAGTCATTTTTGAAACACTACAAAAGTATTCCAGAATTGTTCCATTTGTCAGAAGATTTCAGAAAATACTAAACAAAACTAGATTTTTATTTTTTCAATTGATAACTTCTTTGCCTAATTCCAGTCTGAGGAGATACGTGGTACGTGGAAAAACGTTCCGGAAATGCCTCACTGCTGTGCCTTTAAAAACAGCCTAATATTGCTTTTCGATATTTACAAAAATGTGTCAGATATAAAAATGGAGATCTATTTCCGATTTGTGAATTCTGAAATGTTCAGAAAAAGTAAACACGTCTGGACTACTTCTGTAGATTTTTTAAAATGCTTACATTGTTTTTGATGTCATGCAAAAAGTCAGAATATCCAGTAACACCAATAGTTTTTTTCTTTTGTATCCACTTGCTCTAATGTAATTTCATTAACAAATTATTAACACACTTTCATTCAATTAAGCGCAAATAAACATAGTAATCATTCATTTATGATGTTCACAAGAACTGGTTCTGGAGTACACTCAAAAATCTCTATTGGGCCCTTTTTTTCAATTTCTGTGTCTGCCAGCCATGGATTATCGATAAGATTCATTTCAGATTCTGGATCCACTTCAGATGATATCGTCAGTCTGCTTTTGTACAGTAAAACTATGCATGTGTAGAG</canonical>
            <polymorphic>CTATTTTTTTGAAACTGAGCATATTGAGAAAAAATGTTTGTTGATTTGAGCAGATTTCTAATTCTGTAGATAGTGTTGCAGAAATTTTCTAGGATATAATGGGAGGAAAAAAAAAGTAAATGTTTGATGCGGAACTTGTGAAGCTGAAGTTGGTCATTTTTGAAGCCCTACAAAAGTATACCAGAATTGTTCAATTTGTCAGAAAATGTCAGAAGATACTAAACAAAACTAGATCTTCATTTTTGTAATTGGCATTTTCTTTGGCTGATTCCAGTCTCAGGAGATATGACGTTGGTTATGTATTTAACCAATATAAACAGTTTAAATTTTTTTCAGTGGAAGGTAGTCATTTTTGAAACACTACAAAAGTATTCCAGAATTGTTCCATTTGTCAGAAGATTTCAGAAAATACTAAACAAAACTAGATTTTTATTTTTTCAATTGATAACTTCTTTGCCTAATTCCAGTCTGAGGAGATACGTGGTACGTGGAAAAACGTKCCGGAAATGCCTCACTGCTGTGCCTTTAAAAACAGCCTAATATTGCTTTTCGATATTTACAAAAATGTGTCAGATATAAAAATGGAGATCTATTTCCGATTTGTGAATTCTGAAATGTTCAGAAAAAGTAAACACGTCTGGACTACTTCTGTAGATTTTTTAAAATGCTTACATTGTTTTTGATGTCATGCAAAAAGTCAGAATATCCAGTAACACCAATAGTTTTTTTCTTTTGTATCCACTTGCTCTAATGTAATTTCATTAACAAATTATTAACACACTTTCATTCAATTAAGCGCAAATAAACATAGTAATCATTCATTTATGATGTTCACAAGAACTGGTTCTGGAGTACACTCAAAAATCTCTATTGGGCCCTTTTTTTCAATTTCTGTGTCTGCCAGCCATGGATTATCGATAAGATTCATTTCAGATTCTGGATCCACTTCAGATGATATCGTCAGTCTGCTTTTGTACAGTAAAACTATGCATGTGTAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCCGGA</site>
                <isoschizomers>
                    <enzyme>AccIII</enzyme>
                    <enzyme>BseAI</enzyme>
                    <enzyme>BsiMI</enzyme>
                    <enzyme>Bsp13I</enzyme>
                    <enzyme>BspEI</enzyme>
                    <enzyme>BspMII</enzyme>
                    <enzyme>Kpn2I</enzyme>
                    <enzyme>MroI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>278 209 137 127 96 90 63</canonical_bands>
                <polymorphic_bands>278 264 209 96 90 63</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAATGTTTGATGCGGAACT</pcr_primer_p1>
		<pcr_primer_p2>GTAGTCCAGACGTGTTTACTTTT</pcr_primer_p2>
		<pcr_amplicon_size>530</pcr_amplicon_size>
		<canonical_amplicon>TAAATGTTTGATGCGGAACTTGTGAAGCTGAAGTTGGTCATTTTTGAAGCCCTACAAAAGTATACCAGAATTGTTCAATTTGTCAGAAAATGTCAGAAGATACTAAACAAAACTAGATCTTCATTTTTGTAATTGGCATTTTCTTTGGCTGATTCCAGTCTCAGGAGATATGACGTTGGTTATGTATTTAACCAATATAAACAGTTTAAATTTTTTTCAGTGGAAGGTAGTCATTTTTGAAACACTACAAAAGTATTCCAGAATTGTTCCATTTGTCAGAAGATTTCAGAAAATACTAAACAAAACTAGATTTTTATTTTTTCAATTGATAACTTCTTTGCCTAATTCCAGTCTGAGGAGATACGTGGTACGTGGAAAAACGTTCCGGAAATGCCTCACTGCTGTGCCTTTAAAAACAGCCTAATATTGCTTTTCGATATTTACAAAAATGTGTCAGATATAAAAATGGAGATCTATTTCCGATTTGTGAATTCTGAAATGTTCAGAAAAAGTAAACACGTCTGGACTAC</canonical_amplicon>
		<polymorphic_amplicon>TAAATGTTTGATGCGGAACTTGTGAAGCTGAAGTTGGTCATTTTTGAAGCCCTACAAAAGTATACCAGAATTGTTCAATTTGTCAGAAAATGTCAGAAGATACTAAACAAAACTAGATCTTCATTTTTGTAATTGGCATTTTCTTTGGCTGATTCCAGTCTCAGGAGATATGACGTTGGTTATGTATTTAACCAATATAAACAGTTTAAATTTTTTTCAGTGGAAGGTAGTCATTTTTGAAACACTACAAAAGTATTCCAGAATTGTTCCATTTGTCAGAAGATTTCAGAAAATACTAAACAAAACTAGATTTTTATTTTTTCAATTGATAACTTCTTTGCCTAATTCCAGTCTGAGGAGATACGTGGTACGTGGAAAAACGTKCCGGAAATGCCTCACTGCTGTGCCTTTAAAAACAGCCTAATATTGCTTTTCGATATTTACAAAAATGTGTCAGATATAAAAATGGAGATCTATTTCCGATTTGTGAATTCTGAAATGTTCAGAAAAAGTAAACACGTCTGGACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37435</snp_id>
        <super_contig>c012201017.Contig1</super_contig>
        <contig_pos>42579</contig_pos>
        <strand></strand>
        <context>atttccgatt[T/C]gtraattctg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GATATTTACAAAAATGTGTCAGATATAAAAATGGAGATCTATTTCCGATT</left_flank>
        <right_flank>GTGAATTCTGAAATGTTCAGAAAAAGTAAACACGTCTGGACTACTTCTGT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGAAAAAAAAAGTAAATGTTTGATGCGGAACTTGTGAAGCTGAAGTTGGTCATTTTTGAAGCCCTACAAAAGTATACCAGAATTGTTCAATTTGTCAGAAAATGTCAGAAGATACTAAACAAAACTAGATCTTCATTTTTGTAATTGGCATTTTCTTTGGCTGATTCCAGTCTCAGGAGATATGACGTTGGTTATGTATTTAACCAATATAAACAGTTTAAATTTTTTTCAGTGGAAGGTAGTCATTTTTGAAACACTACAAAAGTATTCCAGAATTGTTCCATTTGTCAGAAGATTTCAGAAAATACTAAACAAAACTAGATTTTTATTTTTTCAATTGATAACTTCTTTGCCTAATTCCAGTCTGAGGAGATACGTGGTACGTGGAAAAACGTTCCGGAAATGCCTCACTGCTGTGCCTTTAAAAACAGCCTAATATTGCTTTTCGATATTTACAAAAATGTGTCAGATATAAAAATGGAGATCTATTTCCGATTTGTGAATTCTGAAATGTTCAGAAAAAGTAAACACGTCTGGACTACTTCTGTAGATTTTTTAAAATGCTTACATTGTTTTTGATGTCATGCAAAAAGTCAGAATATCCAGTAACACCAATAGTTTTTTTCTTTTGTATCCACTTGCTCTAATGTAATTTCATTAACAAATTATTAACACACTTTCATTCAATTAAGCGCAAATAAACATAGTAATCATTCATTTATGATGTTCACAAGAACTGGTTCTGGAGTACACTCAAAAATCTCTATTGGGCCCTTTTTTTCAATTTCTGTGTCTGCCAGCCATGGATTATCGATAAGATTCATTTCAGATTCTGGATCCACTTCAGATGATATCGTCAGTCTGCTTTTGTACAGTAAAACTATGCATGTGTAGAGACAAATAGCTACAAACCAGAGAAGAAGAGCACAAGCATAAACTCGGCGCCCAACATATCCAATGCTATGCTCAGAAGATCTCAGCGACTCTTCTGGGAACAT</canonical>
            <polymorphic>GAGGAAAAAAAAAGTAAATGTTTGATGCGGAACTTGTGAAGCTGAAGTTGGTCATTTTTGAAGCCCTACAAAAGTATACCAGAATTGTTCAATTTGTCAGAAAATGTCAGAAGATACTAAACAAAACTAGATCTTCATTTTTGTAATTGGCATTTTCTTTGGCTGATTCCAGTCTCAGGAGATATGACGTTGGTTATGTATTTAACCAATATAAACAGTTTAAATTTTTTTCAGTGGAAGGTAGTCATTTTTGAAACACTACAAAAGTATTCCAGAATTGTTCCATTTGTCAGAAGATTTCAGAAAATACTAAACAAAACTAGATTTTTATTTTTTCAATTGATAACTTCTTTGCCTAATTCCAGTCTGAGGAGATACGTGGTACGTGGAAAAACGTTCCGGAAATGCCTCACTGCTGTGCCTTTAAAAACAGCCTAATATTGCTTTTCGATATTTACAAAAATGTGTCAGATATAAAAATGGAGATCTATTTCCGATTYGTGAATTCTGAAATGTTCAGAAAAAGTAAACACGTCTGGACTACTTCTGTAGATTTTTTAAAATGCTTACATTGTTTTTGATGTCATGCAAAAAGTCAGAATATCCAGTAACACCAATAGTTTTTTTCTTTTGTATCCACTTGCTCTAATGTAATTTCATTAACAAATTATTAACACACTTTCATTCAATTAAGCGCAAATAAACATAGTAATCATTCATTTATGATGTTCACAAGAACTGGTTCTGGAGTACACTCAAAAATCTCTATTGGGCCCTTTTTTTCAATTTCTGTGTCTGCCAGCCATGGATTATCGATAAGATTCATTTCAGATTCTGGATCCACTTCAGATGATATCGTCAGTCTGCTTTTGTACAGTAAAACTATGCATGTGTAGAGACAAATAGCTACAAACCAGAGAAGAAGAGCACAAGCATAAACTCGGCGCCCAACATATCCAATGCTATGCTCAGAAGATCTCAGCGACTCTTCTGGGAACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAATGTTTGATGCGGAACT</pcr_primer_p1>
		<pcr_primer_p2>TCAAAAACAATGTAAGCATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>567</pcr_amplicon_size>
		<canonical_amplicon>TAAATGTTTGATGCGGAACTTGTGAAGCTGAAGTTGGTCATTTTTGAAGCCCTACAAAAGTATACCAGAATTGTTCAATTTGTCAGAAAATGTCAGAAGATACTAAACAAAACTAGATCTTCATTTTTGTAATTGGCATTTTCTTTGGCTGATTCCAGTCTCAGGAGATATGACGTTGGTTATGTATTTAACCAATATAAACAGTTTAAATTTTTTTCAGTGGAAGGTAGTCATTTTTGAAACACTACAAAAGTATTCCAGAATTGTTCCATTTGTCAGAAGATTTCAGAAAATACTAAACAAAACTAGATTTTTATTTTTTCAATTGATAACTTCTTTGCCTAATTCCAGTCTGAGGAGATACGTGGTACGTGGAAAAACGTTCCGGAAATGCCTCACTGCTGTGCCTTTAAAAACAGCCTAATATTGCTTTTCGATATTTACAAAAATGTGTCAGATATAAAAATGGAGATCTATTTCCGATTTGTGAATTCTGAAATGTTCAGAAAAAGTAAACACGTCTGGACTACTTCTGTAGATTTTTTAAAATGCTTACATTGTTTTTGA</canonical_amplicon>
		<polymorphic_amplicon>TAAATGTTTGATGCGGAACTTGTGAAGCTGAAGTTGGTCATTTTTGAAGCCCTACAAAAGTATACCAGAATTGTTCAATTTGTCAGAAAATGTCAGAAGATACTAAACAAAACTAGATCTTCATTTTTGTAATTGGCATTTTCTTTGGCTGATTCCAGTCTCAGGAGATATGACGTTGGTTATGTATTTAACCAATATAAACAGTTTAAATTTTTTTCAGTGGAAGGTAGTCATTTTTGAAACACTACAAAAGTATTCCAGAATTGTTCCATTTGTCAGAAGATTTCAGAAAATACTAAACAAAACTAGATTTTTATTTTTTCAATTGATAACTTCTTTGCCTAATTCCAGTCTGAGGAGATACGTGGTACGTGGAAAAACGTTCCGGAAATGCCTCACTGCTGTGCCTTTAAAAACAGCCTAATATTGCTTTTCGATATTTACAAAAATGTGTCAGATATAAAAATGGAGATCTATTTCCGATTYGTGAATTCTGAAATGTTCAGAAAAAGTAAACACGTCTGGACTACTTCTGTAGATTTTTTAAAATGCTTACATTGTTTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37436</snp_id>
        <super_contig>c012201017.Contig1</super_contig>
        <contig_pos>42582</contig_pos>
        <strand></strand>
        <context>tccgattygt[G/A]aattctgaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTTACAAAAATGTGTCAGATATAAAAATGGAGATCTATTTCCGATTTGT</left_flank>
        <right_flank>AATTCTGAAATGTTCAGAAAAAGTAAACACGTCTGGACTACTTCTGTAGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAAAAAAGTAAATGTTTGATGCGGAACTTGTGAAGCTGAAGTTGGTCATTTTTGAAGCCCTACAAAAGTATACCAGAATTGTTCAATTTGTCAGAAAATGTCAGAAGATACTAAACAAAACTAGATCTTCATTTTTGTAATTGGCATTTTCTTTGGCTGATTCCAGTCTCAGGAGATATGACGTTGGTTATGTATTTAACCAATATAAACAGTTTAAATTTTTTTCAGTGGAAGGTAGTCATTTTTGAAACACTACAAAAGTATTCCAGAATTGTTCCATTTGTCAGAAGATTTCAGAAAATACTAAACAAAACTAGATTTTTATTTTTTCAATTGATAACTTCTTTGCCTAATTCCAGTCTGAGGAGATACGTGGTACGTGGAAAAACGTTCCGGAAATGCCTCACTGCTGTGCCTTTAAAAACAGCCTAATATTGCTTTTCGATATTTACAAAAATGTGTCAGATATAAAAATGGAGATCTATTTCCGATTTGTGAATTCTGAAATGTTCAGAAAAAGTAAACACGTCTGGACTACTTCTGTAGATTTTTTAAAATGCTTACATTGTTTTTGATGTCATGCAAAAAGTCAGAATATCCAGTAACACCAATAGTTTTTTTCTTTTGTATCCACTTGCTCTAATGTAATTTCATTAACAAATTATTAACACACTTTCATTCAATTAAGCGCAAATAAACATAGTAATCATTCATTTATGATGTTCACAAGAACTGGTTCTGGAGTACACTCAAAAATCTCTATTGGGCCCTTTTTTTCAATTTCTGTGTCTGCCAGCCATGGATTATCGATAAGATTCATTTCAGATTCTGGATCCACTTCAGATGATATCGTCAGTCTGCTTTTGTACAGTAAAACTATGCATGTGTAGAGACAAATAGCTACAAACCAGAGAAGAAGAGCACAAGCATAAACTCGGCGCCCAACATATCCAATGCTATGCTCAGAAGATCTCAGCGACTCTTCTGGGAACATTTT</canonical>
            <polymorphic>GAAAAAAAAAGTAAATGTTTGATGCGGAACTTGTGAAGCTGAAGTTGGTCATTTTTGAAGCCCTACAAAAGTATACCAGAATTGTTCAATTTGTCAGAAAATGTCAGAAGATACTAAACAAAACTAGATCTTCATTTTTGTAATTGGCATTTTCTTTGGCTGATTCCAGTCTCAGGAGATATGACGTTGGTTATGTATTTAACCAATATAAACAGTTTAAATTTTTTTCAGTGGAAGGTAGTCATTTTTGAAACACTACAAAAGTATTCCAGAATTGTTCCATTTGTCAGAAGATTTCAGAAAATACTAAACAAAACTAGATTTTTATTTTTTCAATTGATAACTTCTTTGCCTAATTCCAGTCTGAGGAGATACGTGGTACGTGGAAAAACGTTCCGGAAATGCCTCACTGCTGTGCCTTTAAAAACAGCCTAATATTGCTTTTCGATATTTACAAAAATGTGTCAGATATAAAAATGGAGATCTATTTCCGATTTGTRAATTCTGAAATGTTCAGAAAAAGTAAACACGTCTGGACTACTTCTGTAGATTTTTTAAAATGCTTACATTGTTTTTGATGTCATGCAAAAAGTCAGAATATCCAGTAACACCAATAGTTTTTTTCTTTTGTATCCACTTGCTCTAATGTAATTTCATTAACAAATTATTAACACACTTTCATTCAATTAAGCGCAAATAAACATAGTAATCATTCATTTATGATGTTCACAAGAACTGGTTCTGGAGTACACTCAAAAATCTCTATTGGGCCCTTTTTTTCAATTTCTGTGTCTGCCAGCCATGGATTATCGATAAGATTCATTTCAGATTCTGGATCCACTTCAGATGATATCGTCAGTCTGCTTTTGTACAGTAAAACTATGCATGTGTAGAGACAAATAGCTACAAACCAGAGAAGAAGAGCACAAGCATAAACTCGGCGCCCAACATATCCAATGCTATGCTCAGAAGATCTCAGCGACTCTTCTGGGAACATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>500 281 219</canonical_bands>
                <polymorphic_bands>781 219</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>198 123 81 74 54 50 49 47 40 37 36 36 35 29 26 24 22 22 8 7 2</canonical_bands>
                <polymorphic_bands>198 123 81 74 65 54 50 49 47 40 37 36 35 26 24 22 22 8 7 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAATGTTTGATGCGGAACT</pcr_primer_p1>
		<pcr_primer_p2>TCAAAAACAATGTAAGCATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>567</pcr_amplicon_size>
		<canonical_amplicon>TAAATGTTTGATGCGGAACTTGTGAAGCTGAAGTTGGTCATTTTTGAAGCCCTACAAAAGTATACCAGAATTGTTCAATTTGTCAGAAAATGTCAGAAGATACTAAACAAAACTAGATCTTCATTTTTGTAATTGGCATTTTCTTTGGCTGATTCCAGTCTCAGGAGATATGACGTTGGTTATGTATTTAACCAATATAAACAGTTTAAATTTTTTTCAGTGGAAGGTAGTCATTTTTGAAACACTACAAAAGTATTCCAGAATTGTTCCATTTGTCAGAAGATTTCAGAAAATACTAAACAAAACTAGATTTTTATTTTTTCAATTGATAACTTCTTTGCCTAATTCCAGTCTGAGGAGATACGTGGTACGTGGAAAAACGTTCCGGAAATGCCTCACTGCTGTGCCTTTAAAAACAGCCTAATATTGCTTTTCGATATTTACAAAAATGTGTCAGATATAAAAATGGAGATCTATTTCCGATTTGTGAATTCTGAAATGTTCAGAAAAAGTAAACACGTCTGGACTACTTCTGTAGATTTTTTAAAATGCTTACATTGTTTTTGA</canonical_amplicon>
		<polymorphic_amplicon>TAAATGTTTGATGCGGAACTTGTGAAGCTGAAGTTGGTCATTTTTGAAGCCCTACAAAAGTATACCAGAATTGTTCAATTTGTCAGAAAATGTCAGAAGATACTAAACAAAACTAGATCTTCATTTTTGTAATTGGCATTTTCTTTGGCTGATTCCAGTCTCAGGAGATATGACGTTGGTTATGTATTTAACCAATATAAACAGTTTAAATTTTTTTCAGTGGAAGGTAGTCATTTTTGAAACACTACAAAAGTATTCCAGAATTGTTCCATTTGTCAGAAGATTTCAGAAAATACTAAACAAAACTAGATTTTTATTTTTTCAATTGATAACTTCTTTGCCTAATTCCAGTCTGAGGAGATACGTGGTACGTGGAAAAACGTTCCGGAAATGCCTCACTGCTGTGCCTTTAAAAACAGCCTAATATTGCTTTTCGATATTTACAAAAATGTGTCAGATATAAAAATGGAGATCTATTTCCGATTTGTRAATTCTGAAATGTTCAGAAAAAGTAAACACGTCTGGACTACTTCTGTAGATTTTTTAAAATGCTTACATTGTTTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37437</snp_id>
        <super_contig>c012201017.Contig1</super_contig>
        <contig_pos>44555</contig_pos>
        <strand>+</strand>
        <context>CCATTAGTTM[A/C]GATGGAGAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGCGGGCAAAAAATGGATGAGGCTAGTGTTTTCTCTCTAACCATTAGTTC</left_flank>
        <right_flank>GATGGAGAGCTTATGTTAGAGAAAACGCATAATGCATTTGGCCGGCCCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAGAAACGCTTTATTCATCAATTTTCATTTAAATTCGCCATTTCCCGACTCCCCCATAAGATCGAGTTCATTTTCAACTTTATATGAAAACAATTACTTCCATTCTCAGGAACGTCCCCCAATTTTTTCTTTCCCGTTGTGTTTTATTTTTTCGTCCTCTCTCTTCGCTATCGATCCATCAGCACGGCAGATGGTGTTCATGACGTATACGTATGTGTGTGCGAGAAACAGTGGGGCAACGCGGCGAATGTCGCTCGCACACCCTATCTTCACCAGAAACGGCGGAAAATACCGTGCGGATTGAAGAGACACAGTTTCCTGTCGGGTCACTCGGGGCCTCTCGGTGGCTTAGTTCGAGTGTAGACATTGTGCGGAGGGAAGAAAGGCGAGAGAAGATAGAGGAAGAATTAGCATTCGCGTGGTGTGTAACACTAGCAGAAAAGAGCGAGCGGGCAAAAAATGGATGAGGCTAGTGTTTTCTCTCTAACCATTAGTTCAGATGGAGAGCTTATGTTAGAGAAAACGCATAATGCATTTGGCCGGCCCAGCACACAGCATCCCAGAGCGACAATTAACGGAAACCGCGCTCTGCTGTGAATACGGCTCCTATCTCCATAAACATTTCATTGGAAATCGCATTTTTGCTGTAATAGAGATAAAAAAATGTAATAGAGATAAAAAATAATAGAGATAAAAAAATAGTTGCCAGATTTGAATTTATTAAAACTCAGAAAAAAATTCGAACACGGATAAGATCAAGATCATCGTGAAAATGAAAATCTGTAATCAGAAATAAATTCAATTTCTTAATTAACGAATAAGATGAAATATAGAAGGTAGGGGGTTTGATTTCATAAGGGGAACAGGTGAAAAAAGTTACAGAAATTGAAGGAAAATAAAAATGAAAATAAAATCCAGGCATTTTCGAAACTGAAGAGTTGAAGAGAGGAAAATCAAATTTGCATTCAGTAACATTCCGAAAAGATTCAACGGATTTG</canonical>
            <polymorphic>TTTAGAAACGCTTTATTCATCAATTTTCATTTAAATTCGCCATTTCCCGACTCCCCCATAAGATCGAGTTCATTTTCAACTTTATATGAAAACAATTACTTCCATTCTCAGGAACGTCCCCCAATTTTTTCTTTCCCGTTGTGTTTTATTTTTTCGTCCTCTCTCTTCGCTATCGATCCATCAGCACGGCAGATGGTGTTCATGACGTATACGTATGTGTGTGCGAGAAACAGTGGGGCAACGCGGCGAATGTCGCTCGCACACCCTATCTTCACCAGAAACGGCGGAAAATACCGTGCGGATTGAAGAGACACAGTTTCCTGTCGGGTCACTCGGGGCCTCTCGGTGGCTTAGTTCGAGTGTAGACATTGTGCGGAGGGAAGAAAGGCGAGAGAAGATAGAGGAAGAATTAGCATTCGCGTGGTGTGTAACACTAGCAGAAAAGAGCGAGCGGGCAAAAAATGGATGAGGCTAGTGTTTTCTCTCTAACCATTAGTTCMGATGGAGAGCTTATGTTAGAGAAAACGCATAATGCATTTGGCCGGCCCAGCACACAGCATCCCAGAGCGACAATTAACGGAAACCGCGCTCTGCTGTGAATACGGCTCCTATCTCCATAAACATTTCATTGGAAATCGCATTTTTGCTGTAATAGAGATAAAAAAATGTAATAGAGATAAAAAATAATAGAGATAAAAAAATAGTTGCCAGATTTGAATTTATTAAAACTCAGAAAAAAATTCGAACACGGATAAGATCAAGATCATCGTGAAAATGAAAATCTGTAATCAGAAATAAATTCAATTTCTTAATTAACGAATAAGATGAAATATAGAAGGTAGGGGGTTTGATTTCATAAGGGGAACAGGTGAAAAAAGTTACAGAAATTGAAGGAAAATAAAAATGAAAATAAAATCCAGGCATTTTCGAAACTGAAGAGTTGAAGAGAGGAAAATCAAATTTGCATTCAGTAACATTCCGAAAAGATTCAACGGATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGAAAGGCGAGAGAAGATA</pcr_primer_p1>
		<pcr_primer_p2>TGAAATGTTTATGGAGATAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAGAAAGGCGAGAGAAGATAGAGGAAGAATTAGCATTCGCGTGGTGTGTAACACTAGCAGAAAAGAGCGAGCGGGCAAAAAATGGATGAGGCTAGTGTTTTCTCTCTAACCATTAGTTCAGATGGAGAGCTTATGTTAGAGAAAACGCATAATGCATTTGGCCGGCCCAGCACACAGCATCCCAGAGCGACAATTAACGGAAACCGCGCTCTGCTGTGAATACGGCTCCTATCTCCATAAACATTTCA</canonical_amplicon>
		<polymorphic_amplicon>GAAGAAAGGCGAGAGAAGATAGAGGAAGAATTAGCATTCGCGTGGTGTGTAACACTAGCAGAAAAGAGCGAGCGGGCAAAAAATGGATGAGGCTAGTGTTTTCTCTCTAACCATTAGTTCMGATGGAGAGCTTATGTTAGAGAAAACGCATAATGCATTTGGCCGGCCCAGCACACAGCATCCCAGAGCGACAATTAACGGAAACCGCGCTCTGCTGTGAATACGGCTCCTATCTCCATAAACATTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37438</snp_id>
        <super_contig>c012201017.Contig1</super_contig>
        <contig_pos>83721</contig_pos>
        <strand>+</strand>
        <context>TTTCCAGACG[C/T]CCTCATTTYG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCGACAGTCTTTCAGTTTCATGACTACGAGACTTCTTGGTTTCCAGACG</left_flank>
        <right_flank>CCTCATTTTGTTTATGGAATTCCGGATTCCAAATTCCAAATTCTCACTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTAAACGATAAAAGTTTTTAAAAAGTTATGAAAAACACTTTACCAGTTTACCGATTTCTGGTATATTTCACAGAAAACGAGCTACTTGAGCTCAAAGTGCAAACAGGAATCTTGGAAAATTGATAATTCATGTGTTTGTTTCCAGGTAACTCATCCATTGTGCTATCAACTTCATCAAAGTCTGTTGTAGATCGACCGCCTTCATTTCTGTTCGAAATTTGTCTATAAATTCTCATGAAACATTTTTTAACTTGTGTTTTGCAAAAAAGCTTCAGACTTCACAACTTTTCAGTTTCCCGATTTTTCAGTACTCCACTTCTCGACTTCTCGGCTTCCTGACTCCCGGATTTCTTGTTTTTCCGACCTCAAATTCCAAAGTTCGACTCCCGACTTTCTGCTTTTGTGGTTTCCCGAACTTTCCGTTTTCCCAATTTTCAGTTCTCTGCTTCCCGACAGTCTTTCAGTTTCATGACTACGAGACTTCTTGGTTTCCAGACGTCCTCATTTTGTTTATGGAATTCCGGATTCCAAATTCCAAATTCTCACTTCCGACTACCAAAATTTGAAATGTCAATTTCCAAAATCTGAGTGCTGACTTCGAACTCTGAAAACTTTCAAAATATAAAAATACCCCATCAAAAATTAATATTTTCAATTTGTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGTTTTGGTACTTGTTGCACCGTCTACCACCACTCCAGCATAACTTTCTGTCAAGGACAGATATACGAAAATACTCTCTTTCTCTACGTCTCCATCAGATCCATTCTGTTTCCGCCTGCTTTTCCGCCTGCTTCTATGTTTCCGCCTGCTTCGCCGTGCGAATCAATGTCACTCTCTTTGCTTGGCGGGCTGACAGAATGACTGCCTACATTTTTCGGGAAGCTTTCCATTGAGCCTTGTAAAGGCTCGGAAAGTTTCCCTTATTTTTCTGAAAATTCAACTTATTCTCTATTATTCGGTTCTTTCC</canonical>
            <polymorphic>TGTAAACGATAAAAGTTTTTAAAAAGTTATGAAAAACACTTTACCAGTTTACCGATTTCTGGTATATTTCACAGAAAACGAGCTACTTGAGCTCAAAGTGCAAACAGGAATCTTGGAAAATTGATAATTCATGTGTTTGTTTCCAGGTAACTCATCCATTGTGCTATCAACTTCATCAAAGTCTGTTGTAGATCGACCGCCTTCATTTCTGTTCGAAATTTGTCTATAAATTCTCATGAAACATTTTTTAACTTGTGTTTTGCAAAAAAGCTTCAGACTTCACAACTTTTCAGTTTCCCGATTTTTCAGTACTCCACTTCTCGACTTCTCGGCTTCCTGACTCCCGGATTTCTTGTTTTTCCGACCTCAAATTCCAAAGTTCGACTCCCGACTTTCTGCTTTTGTGGTTTCCCGAACTTTCCGTTTTCCCAATTTTCAGTTCTCTGCTTCCCGACAGTCTTTCAGTTTCATGACTACGAGACTTCTTGGTTTCCAGACGYCCTCATTTTGTTTATGGAATTCCGGATTCCAAATTCCAAATTCTCACTTCCGACTACCAAAATTTGAAATGTCAATTTCCAAAATCTGAGTGCTGACTTCGAACTCTGAAAACTTTCAAAATATAAAAATACCCCATCAAAAATTAATATTTTCAATTTGTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGTTTTGGTACTTGTTGCACCGTCTACCACCACTCCAGCATAACTTTCTGTCAAGGACAGATATACGAAAATACTCTCTTTCTCTACGTCTCCATCAGATCCATTCTGTTTCCGCCTGCTTTTCCGCCTGCTTCTATGTTTCCGCCTGCTTCGCCGTGCGAATCAATGTCACTCTCTTTGCTTGGCGGGCTGACAGAATGACTGCCTACATTTTTCGGGAAGCTTTCCATTGAGCCTTGTAAAGGCTCGGAAAGTTTCCCTTATTTTTCTGAAAATTCAACTTATTCTCTATTATTCGGTTCTTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACGTC</site>
                <isoschizomers>
                    <enzyme>AatII</enzyme>
                    <enzyme>ZraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>497 282 221</canonical_bands>
                <polymorphic_bands>779 221</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTTCTGCTTTTGTGGTTTC</pcr_primer_p1>
		<pcr_primer_p2>TGATGGGGTATTTTTATATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTTTCTGCTTTTGTGGTTTCCCGAACTTTCCGTTTTCCCAATTTTCAGTTCTCTGCTTCCCGACAGTCTTTCAGTTTCATGACTACGAGACTTCTTGGTTTCCAGACGTCCTCATTTTGTTTATGGAATTCCGGATTCCAAATTCCAAATTCTCACTTCCGACTACCAAAATTTGAAATGTCAATTTCCAAAATCTGAGTGCTGACTTCGAACTCTGAAAACTTTCAAAATATAAAAATACCCCATCA</canonical_amplicon>
		<polymorphic_amplicon>ACTTTCTGCTTTTGTGGTTTCCCGAACTTTCCGTTTTCCCAATTTTCAGTTCTCTGCTTCCCGACAGTCTTTCAGTTTCATGACTACGAGACTTCTTGGTTTCCAGACGYCCTCATTTTGTTTATGGAATTCCGGATTCCAAATTCCAAATTCTCACTTCCGACTACCAAAATTTGAAATGTCAATTTCCAAAATCTGAGTGCTGACTTCGAACTCTGAAAACTTTCAAAATATAAAAATACCCCATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37439</snp_id>
        <super_contig>c012201017.Contig1</super_contig>
        <contig_pos>83730</contig_pos>
        <strand>+</strand>
        <context>GYCCTCATTT[C/T]GTTTATGRAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTCAGTTTCATGACTACGAGACTTCTTGGTTTCCAGACGTCCTCATTT</left_flank>
        <right_flank>GTTTATGGAATTCCGGATTCCAAATTCCAAATTCTCACTTCCGACTACCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAAGTTTTTAAAAAGTTATGAAAAACACTTTACCAGTTTACCGATTTCTGGTATATTTCACAGAAAACGAGCTACTTGAGCTCAAAGTGCAAACAGGAATCTTGGAAAATTGATAATTCATGTGTTTGTTTCCAGGTAACTCATCCATTGTGCTATCAACTTCATCAAAGTCTGTTGTAGATCGACCGCCTTCATTTCTGTTCGAAATTTGTCTATAAATTCTCATGAAACATTTTTTAACTTGTGTTTTGCAAAAAAGCTTCAGACTTCACAACTTTTCAGTTTCCCGATTTTTCAGTACTCCACTTCTCGACTTCTCGGCTTCCTGACTCCCGGATTTCTTGTTTTTCCGACCTCAAATTCCAAAGTTCGACTCCCGACTTTCTGCTTTTGTGGTTTCCCGAACTTTCCGTTTTCCCAATTTTCAGTTCTCTGCTTCCCGACAGTCTTTCAGTTTCATGACTACGAGACTTCTTGGTTTCCAGACGTCCTCATTTTGTTTATGGAATTCCGGATTCCAAATTCCAAATTCTCACTTCCGACTACCAAAATTTGAAATGTCAATTTCCAAAATCTGAGTGCTGACTTCGAACTCTGAAAACTTTCAAAATATAAAAATACCCCATCAAAAATTAATATTTTCAATTTGTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGTTTTGGTACTTGTTGCACCGTCTACCACCACTCCAGCATAACTTTCTGTCAAGGACAGATATACGAAAATACTCTCTTTCTCTACGTCTCCATCAGATCCATTCTGTTTCCGCCTGCTTTTCCGCCTGCTTCTATGTTTCCGCCTGCTTCGCCGTGCGAATCAATGTCACTCTCTTTGCTTGGCGGGCTGACAGAATGACTGCCTACATTTTTCGGGAAGCTTTCCATTGAGCCTTGTAAAGGCTCGGAAAGTTTCCCTTATTTTTCTGAAAATTCAACTTATTCTCTATTATTCGGTTCTTTCCAAAAATCCT</canonical>
            <polymorphic>TAAAAGTTTTTAAAAAGTTATGAAAAACACTTTACCAGTTTACCGATTTCTGGTATATTTCACAGAAAACGAGCTACTTGAGCTCAAAGTGCAAACAGGAATCTTGGAAAATTGATAATTCATGTGTTTGTTTCCAGGTAACTCATCCATTGTGCTATCAACTTCATCAAAGTCTGTTGTAGATCGACCGCCTTCATTTCTGTTCGAAATTTGTCTATAAATTCTCATGAAACATTTTTTAACTTGTGTTTTGCAAAAAAGCTTCAGACTTCACAACTTTTCAGTTTCCCGATTTTTCAGTACTCCACTTCTCGACTTCTCGGCTTCCTGACTCCCGGATTTCTTGTTTTTCCGACCTCAAATTCCAAAGTTCGACTCCCGACTTTCTGCTTTTGTGGTTTCCCGAACTTTCCGTTTTCCCAATTTTCAGTTCTCTGCTTCCCGACAGTCTTTCAGTTTCATGACTACGAGACTTCTTGGTTTCCAGACGTCCTCATTTYGTTTATGGAATTCCGGATTCCAAATTCCAAATTCTCACTTCCGACTACCAAAATTTGAAATGTCAATTTCCAAAATCTGAGTGCTGACTTCGAACTCTGAAAACTTTCAAAATATAAAAATACCCCATCAAAAATTAATATTTTCAATTTGTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGTTTTGGTACTTGTTGCACCGTCTACCACCACTCCAGCATAACTTTCTGTCAAGGACAGATATACGAAAATACTCTCTTTCTCTACGTCTCCATCAGATCCATTCTGTTTCCGCCTGCTTTTCCGCCTGCTTCTATGTTTCCGCCTGCTTCGCCGTGCGAATCAATGTCACTCTCTTTGCTTGGCGGGCTGACAGAATGACTGCCTACATTTTTCGGGAAGCTTTCCATTGAGCCTTGTAAAGGCTCGGAAAGTTTCCCTTATTTTTCTGAAAATTCAACTTATTCTCTATTATTCGGTTCTTTCCAAAAATCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCTTTCAGTTTCATGACTACG</pcr_primer_p1>
		<pcr_primer_p2>ACGAGAGAAATCGTATACAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>AGTCTTTCAGTTTCATGACTACGAGACTTCTTGGTTTCCAGACGTCCTCATTTTGTTTATGGAATTCCGGATTCCAAATTCCAAATTCTCACTTCCGACTACCAAAATTTGAAATGTCAATTTCCAAAATCTGAGTGCTGACTTCGAACTCTGAAAACTTTCAAAATATAAAAATACCCCATCAAAAATTAATATTTTCAATTTGTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGT</canonical_amplicon>
		<polymorphic_amplicon>AGTCTTTCAGTTTCATGACTACGAGACTTCTTGGTTTCCAGACGTCCTCATTTYGTTTATGGAATTCCGGATTCCAAATTCCAAATTCTCACTTCCGACTACCAAAATTTGAAATGTCAATTTCCAAAATCTGAGTGCTGACTTCGAACTCTGAAAACTTTCAAAATATAAAAATACCCCATCAAAAATTAATATTTTCAATTTGTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37440</snp_id>
        <super_contig>c012201017.Contig1</super_contig>
        <contig_pos>83738</contig_pos>
        <strand>+</strand>
        <context>TTYGTTTATG[A/G]AATTCCGGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCATGACTACGAGACTTCTTGGTTTCCAGACGTCCTCATTTTGTTTATG</left_flank>
        <right_flank>AATTCCGGATTCCAAATTCCAAATTCTCACTTCCGACTACCAAAATTTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAAAAAGTTATGAAAAACACTTTACCAGTTTACCGATTTCTGGTATATTTCACAGAAAACGAGCTACTTGAGCTCAAAGTGCAAACAGGAATCTTGGAAAATTGATAATTCATGTGTTTGTTTCCAGGTAACTCATCCATTGTGCTATCAACTTCATCAAAGTCTGTTGTAGATCGACCGCCTTCATTTCTGTTCGAAATTTGTCTATAAATTCTCATGAAACATTTTTTAACTTGTGTTTTGCAAAAAAGCTTCAGACTTCACAACTTTTCAGTTTCCCGATTTTTCAGTACTCCACTTCTCGACTTCTCGGCTTCCTGACTCCCGGATTTCTTGTTTTTCCGACCTCAAATTCCAAAGTTCGACTCCCGACTTTCTGCTTTTGTGGTTTCCCGAACTTTCCGTTTTCCCAATTTTCAGTTCTCTGCTTCCCGACAGTCTTTCAGTTTCATGACTACGAGACTTCTTGGTTTCCAGACGTCCTCATTTTGTTTATGGAATTCCGGATTCCAAATTCCAAATTCTCACTTCCGACTACCAAAATTTGAAATGTCAATTTCCAAAATCTGAGTGCTGACTTCGAACTCTGAAAACTTTCAAAATATAAAAATACCCCATCAAAAATTAATATTTTCAATTTGTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGTTTTGGTACTTGTTGCACCGTCTACCACCACTCCAGCATAACTTTCTGTCAAGGACAGATATACGAAAATACTCTCTTTCTCTACGTCTCCATCAGATCCATTCTGTTTCCGCCTGCTTTTCCGCCTGCTTCTATGTTTCCGCCTGCTTCGCCGTGCGAATCAATGTCACTCTCTTTGCTTGGCGGGCTGACAGAATGACTGCCTACATTTTTCGGGAAGCTTTCCATTGAGCCTTGTAAAGGCTCGGAAAGTTTCCCTTATTTTTCTGAAAATTCAACTTATTCTCTATTATTCGGTTCTTTCCAAAAATCCTTGCTGGAG</canonical>
            <polymorphic>TTTAAAAAGTTATGAAAAACACTTTACCAGTTTACCGATTTCTGGTATATTTCACAGAAAACGAGCTACTTGAGCTCAAAGTGCAAACAGGAATCTTGGAAAATTGATAATTCATGTGTTTGTTTCCAGGTAACTCATCCATTGTGCTATCAACTTCATCAAAGTCTGTTGTAGATCGACCGCCTTCATTTCTGTTCGAAATTTGTCTATAAATTCTCATGAAACATTTTTTAACTTGTGTTTTGCAAAAAAGCTTCAGACTTCACAACTTTTCAGTTTCCCGATTTTTCAGTACTCCACTTCTCGACTTCTCGGCTTCCTGACTCCCGGATTTCTTGTTTTTCCGACCTCAAATTCCAAAGTTCGACTCCCGACTTTCTGCTTTTGTGGTTTCCCGAACTTTCCGTTTTCCCAATTTTCAGTTCTCTGCTTCCCGACAGTCTTTCAGTTTCATGACTACGAGACTTCTTGGTTTCCAGACGTCCTCATTTTGTTTATGRAATTCCGGATTCCAAATTCCAAATTCTCACTTCCGACTACCAAAATTTGAAATGTCAATTTCCAAAATCTGAGTGCTGACTTCGAACTCTGAAAACTTTCAAAATATAAAAATACCCCATCAAAAATTAATATTTTCAATTTGTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGTTTTGGTACTTGTTGCACCGTCTACCACCACTCCAGCATAACTTTCTGTCAAGGACAGATATACGAAAATACTCTCTTTCTCTACGTCTCCATCAGATCCATTCTGTTTCCGCCTGCTTTTCCGCCTGCTTCTATGTTTCCGCCTGCTTCGCCGTGCGAATCAATGTCACTCTCTTTGCTTGGCGGGCTGACAGAATGACTGCCTACATTTTTCGGGAAGCTTTCCATTGAGCCTTGTAAAGGCTCGGAAAGTTTCCCTTATTTTTCTGAAAATTCAACTTATTCTCTATTATTCGGTTCTTTCCAAAAATCCTTGCTGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>406 199 148 141 51 22 14 12 7</canonical_bands>
                <polymorphic_bands>406 199 162 141 51 22 12 7</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTCTTTCAGTTTCATGACTACG</pcr_primer_p1>
		<pcr_primer_p2>ACGAGAGAAATCGTATACAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>AGTCTTTCAGTTTCATGACTACGAGACTTCTTGGTTTCCAGACGTCCTCATTTTGTTTATGGAATTCCGGATTCCAAATTCCAAATTCTCACTTCCGACTACCAAAATTTGAAATGTCAATTTCCAAAATCTGAGTGCTGACTTCGAACTCTGAAAACTTTCAAAATATAAAAATACCCCATCAAAAATTAATATTTTCAATTTGTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGT</canonical_amplicon>
		<polymorphic_amplicon>AGTCTTTCAGTTTCATGACTACGAGACTTCTTGGTTTCCAGACGTCCTCATTTTGTTTATGRAATTCCGGATTCCAAATTCCAAATTCTCACTTCCGACTACCAAAATTTGAAATGTCAATTTCCAAAATCTGAGTGCTGACTTCGAACTCTGAAAACTTTCAAAATATAAAAATACCCCATCAAAAATTAATATTTTCAATTTGTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37441</snp_id>
        <super_contig>c012201017.Contig1</super_contig>
        <contig_pos>83880</contig_pos>
        <strand>+</strand>
        <context>ATTTTCAATT[C/T]GTTCCCACAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAACTTTCAAAATATAAAAATACCCCATCAAAAATTAATATTTTCAATT</left_flank>
        <right_flank>GTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGTTTTGGTACTTGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGCTATCAACTTCATCAAAGTCTGTTGTAGATCGACCGCCTTCATTTCTGTTCGAAATTTGTCTATAAATTCTCATGAAACATTTTTTAACTTGTGTTTTGCAAAAAAGCTTCAGACTTCACAACTTTTCAGTTTCCCGATTTTTCAGTACTCCACTTCTCGACTTCTCGGCTTCCTGACTCCCGGATTTCTTGTTTTTCCGACCTCAAATTCCAAAGTTCGACTCCCGACTTTCTGCTTTTGTGGTTTCCCGAACTTTCCGTTTTCCCAATTTTCAGTTCTCTGCTTCCCGACAGTCTTTCAGTTTCATGACTACGAGACTTCTTGGTTTCCAGACGTCCTCATTTTGTTTATGGAATTCCGGATTCCAAATTCCAAATTCTCACTTCCGACTACCAAAATTTGAAATGTCAATTTCCAAAATCTGAGTGCTGACTTCGAACTCTGAAAACTTTCAAAATATAAAAATACCCCATCAAAAATTAATATTTTCAATTTGTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGTTTTGGTACTTGTTGCACCGTCTACCACCACTCCAGCATAACTTTCTGTCAAGGACAGATATACGAAAATACTCTCTTTCTCTACGTCTCCATCAGATCCATTCTGTTTCCGCCTGCTTTTCCGCCTGCTTCTATGTTTCCGCCTGCTTCGCCGTGCGAATCAATGTCACTCTCTTTGCTTGGCGGGCTGACAGAATGACTGCCTACATTTTTCGGGAAGCTTTCCATTGAGCCTTGTAAAGGCTCGGAAAGTTTCCCTTATTTTTCTGAAAATTCAACTTATTCTCTATTATTCGGTTCTTTCCAAAAATCCTTGCTGGAGGATATCGATGGACCCTCTTCTCCTCGTCCCTACATTAACCGATAGGATCCAGATGGCCCACCAGAGCTCAAGCGACAAAGAGATCCCGACTCGGACTTGGAGGAATCGGAGGACTCGGAACAATTGGAACACTCGAAGGACG</canonical>
            <polymorphic>TGTGCTATCAACTTCATCAAAGTCTGTTGTAGATCGACCGCCTTCATTTCTGTTCGAAATTTGTCTATAAATTCTCATGAAACATTTTTTAACTTGTGTTTTGCAAAAAAGCTTCAGACTTCACAACTTTTCAGTTTCCCGATTTTTCAGTACTCCACTTCTCGACTTCTCGGCTTCCTGACTCCCGGATTTCTTGTTTTTCCGACCTCAAATTCCAAAGTTCGACTCCCGACTTTCTGCTTTTGTGGTTTCCCGAACTTTCCGTTTTCCCAATTTTCAGTTCTCTGCTTCCCGACAGTCTTTCAGTTTCATGACTACGAGACTTCTTGGTTTCCAGACGTCCTCATTTTGTTTATGGAATTCCGGATTCCAAATTCCAAATTCTCACTTCCGACTACCAAAATTTGAAATGTCAATTTCCAAAATCTGAGTGCTGACTTCGAACTCTGAAAACTTTCAAAATATAAAAATACCCCATCAAAAATTAATATTTTCAATTYGTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGTTTTGGTACTTGTTGCACCGTCTACCACCACTCCAGCATAACTTTCTGTCAAGGACAGATATACGAAAATACTCTCTTTCTCTACGTCTCCATCAGATCCATTCTGTTTCCGCCTGCTTTTCCGCCTGCTTCTATGTTTCCGCCTGCTTCGCCGTGCGAATCAATGTCACTCTCTTTGCTTGGCGGGCTGACAGAATGACTGCCTACATTTTTCGGGAAGCTTTCCATTGAGCCTTGTAAAGGCTCGGAAAGTTTCCCTTATTTTTCTGAAAATTCAACTTATTCTCTATTATTCGGTTCTTTCCAAAAATCCTTGCTGGAGGATATCGATGGACCCTCTTCTCCTCGTCCCTACATTAACCGATAGGATCCAGATGGCCCACCAGAGCTCAAGCGACAAAGAGATCCCGACTCGGACTTGGAGGAATCGGAGGACTCGGAACAATTGGAACACTCGAAGGACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCACTTCCGACTACCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATGGAGACGTAGAGAAAGAGAGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTCACTTCCGACTACCAAAATTTGAAATGTCAATTTCCAAAATCTGAGTGCTGACTTCGAACTCTGAAAACTTTCAAAATATAAAAATACCCCATCAAAAATTAATATTTTCAATTTGTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGTTTTGGTACTTGTTGCACCGTCTACCACCACTCCAGCATAACTTTCTGTCAAGGACAGATATACGAAAATACTCTCTTTCTCTACGTCTCCAT</canonical_amplicon>
		<polymorphic_amplicon>CTCACTTCCGACTACCAAAATTTGAAATGTCAATTTCCAAAATCTGAGTGCTGACTTCGAACTCTGAAAACTTTCAAAATATAAAAATACCCCATCAAAAATTAATATTTTCAATTYGTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGTTTTGGTACTTGTTGCACCGTCTACCACCACTCCAGCATAACTTTCTGTCAAGGACAGATATACGAAAATACTCTCTTTCTCTACGTCTCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37442</snp_id>
        <super_contig>c012201017.Contig1</super_contig>
        <contig_pos>83924</contig_pos>
        <strand>+</strand>
        <context>TCGTTTTGGT[A/C]CTTKTTGCAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCAATTTGTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGTTTTGGT</left_flank>
        <right_flank>CTTGTTGCACCGTCTACCACCACTCCAGCATAACTTTCTGTCAAGGACAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTCTGTTCGAAATTTGTCTATAAATTCTCATGAAACATTTTTTAACTTGTGTTTTGCAAAAAAGCTTCAGACTTCACAACTTTTCAGTTTCCCGATTTTTCAGTACTCCACTTCTCGACTTCTCGGCTTCCTGACTCCCGGATTTCTTGTTTTTCCGACCTCAAATTCCAAAGTTCGACTCCCGACTTTCTGCTTTTGTGGTTTCCCGAACTTTCCGTTTTCCCAATTTTCAGTTCTCTGCTTCCCGACAGTCTTTCAGTTTCATGACTACGAGACTTCTTGGTTTCCAGACGTCCTCATTTTGTTTATGGAATTCCGGATTCCAAATTCCAAATTCTCACTTCCGACTACCAAAATTTGAAATGTCAATTTCCAAAATCTGAGTGCTGACTTCGAACTCTGAAAACTTTCAAAATATAAAAATACCCCATCAAAAATTAATATTTTCAATTTGTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGTTTTGGTACTTGTTGCACCGTCTACCACCACTCCAGCATAACTTTCTGTCAAGGACAGATATACGAAAATACTCTCTTTCTCTACGTCTCCATCAGATCCATTCTGTTTCCGCCTGCTTTTCCGCCTGCTTCTATGTTTCCGCCTGCTTCGCCGTGCGAATCAATGTCACTCTCTTTGCTTGGCGGGCTGACAGAATGACTGCCTACATTTTTCGGGAAGCTTTCCATTGAGCCTTGTAAAGGCTCGGAAAGTTTCCCTTATTTTTCTGAAAATTCAACTTATTCTCTATTATTCGGTTCTTTCCAAAAATCCTTGCTGGAGGATATCGATGGACCCTCTTCTCCTCGTCCCTACATTAACCGATAGGATCCAGATGGCCCACCAGAGCTCAAGCGACAAAGAGATCCCGACTCGGACTTGGAGGAATCGGAGGACTCGGAACAATTGGAACACTCGAAGGACGATATGTCACCGCAGCTTCAACCCGAGCTCCCTGATGACCTAAAC</canonical>
            <polymorphic>CATTTCTGTTCGAAATTTGTCTATAAATTCTCATGAAACATTTTTTAACTTGTGTTTTGCAAAAAAGCTTCAGACTTCACAACTTTTCAGTTTCCCGATTTTTCAGTACTCCACTTCTCGACTTCTCGGCTTCCTGACTCCCGGATTTCTTGTTTTTCCGACCTCAAATTCCAAAGTTCGACTCCCGACTTTCTGCTTTTGTGGTTTCCCGAACTTTCCGTTTTCCCAATTTTCAGTTCTCTGCTTCCCGACAGTCTTTCAGTTTCATGACTACGAGACTTCTTGGTTTCCAGACGTCCTCATTTTGTTTATGGAATTCCGGATTCCAAATTCCAAATTCTCACTTCCGACTACCAAAATTTGAAATGTCAATTTCCAAAATCTGAGTGCTGACTTCGAACTCTGAAAACTTTCAAAATATAAAAATACCCCATCAAAAATTAATATTTTCAATTTGTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGTTTTGGTMCTTGTTGCACCGTCTACCACCACTCCAGCATAACTTTCTGTCAAGGACAGATATACGAAAATACTCTCTTTCTCTACGTCTCCATCAGATCCATTCTGTTTCCGCCTGCTTTTCCGCCTGCTTCTATGTTTCCGCCTGCTTCGCCGTGCGAATCAATGTCACTCTCTTTGCTTGGCGGGCTGACAGAATGACTGCCTACATTTTTCGGGAAGCTTTCCATTGAGCCTTGTAAAGGCTCGGAAAGTTTCCCTTATTTTTCTGAAAATTCAACTTATTCTCTATTATTCGGTTCTTTCCAAAAATCCTTGCTGGAGGATATCGATGGACCCTCTTCTCCTCGTCCCTACATTAACCGATAGGATCCAGATGGCCCACCAGAGCTCAAGCGACAAAGAGATCCCGACTCGGACTTGGAGGAATCGGAGGACTCGGAACAATTGGAACACTCGAAGGACGATATGTCACCGCAGCTTCAACCCGAGCTCCCTGATGACCTAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 392 107</canonical_bands>
                <polymorphic_bands>893 107</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAAATACCCCATCAAAAATTA</pcr_primer_p1>
		<pcr_primer_p2>AGCAAAGAGAGTGACATTGATT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAAAAATACCCCATCAAAAATTAATATTTTCAATTTGTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGTTTTGGTACTTGTTGCACCGTCTACCACCACTCCAGCATAACTTTCTGTCAAGGACAGATATACGAAAATACTCTCTTTCTCTACGTCTCCATCAGATCCATTCTGTTTCCGCCTGCTTTTCCGCCTGCTTCTATGTTTCCGCCTGCTTCGCCGTGCGAATCAATGTCACTCTCTTTGCT</canonical_amplicon>
		<polymorphic_amplicon>TAAAAATACCCCATCAAAAATTAATATTTTCAATTTGTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGTTTTGGTMCTTGTTGCACCGTCTACCACCACTCCAGCATAACTTTCTGTCAAGGACAGATATACGAAAATACTCTCTTTCTCTACGTCTCCATCAGATCCATTCTGTTTCCGCCTGCTTTTCCGCCTGCTTCTATGTTTCCGCCTGCTTCGCCGTGCGAATCAATGTCACTCTCTTTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37443</snp_id>
        <super_contig>c012201017.Contig1</super_contig>
        <contig_pos>83928</contig_pos>
        <strand>+</strand>
        <context>TTTGGTMCTT[G/T]TTGCACCGWC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTGTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGTTTTGGTACTT</left_flank>
        <right_flank>TTGCACCGTCTACCACCACTCCAGCATAACTTTCTGTCAAGGACAGATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGTTCGAAATTTGTCTATAAATTCTCATGAAACATTTTTTAACTTGTGTTTTGCAAAAAAGCTTCAGACTTCACAACTTTTCAGTTTCCCGATTTTTCAGTACTCCACTTCTCGACTTCTCGGCTTCCTGACTCCCGGATTTCTTGTTTTTCCGACCTCAAATTCCAAAGTTCGACTCCCGACTTTCTGCTTTTGTGGTTTCCCGAACTTTCCGTTTTCCCAATTTTCAGTTCTCTGCTTCCCGACAGTCTTTCAGTTTCATGACTACGAGACTTCTTGGTTTCCAGACGTCCTCATTTTGTTTATGGAATTCCGGATTCCAAATTCCAAATTCTCACTTCCGACTACCAAAATTTGAAATGTCAATTTCCAAAATCTGAGTGCTGACTTCGAACTCTGAAAACTTTCAAAATATAAAAATACCCCATCAAAAATTAATATTTTCAATTTGTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGTTTTGGTACTTGTTGCACCGTCTACCACCACTCCAGCATAACTTTCTGTCAAGGACAGATATACGAAAATACTCTCTTTCTCTACGTCTCCATCAGATCCATTCTGTTTCCGCCTGCTTTTCCGCCTGCTTCTATGTTTCCGCCTGCTTCGCCGTGCGAATCAATGTCACTCTCTTTGCTTGGCGGGCTGACAGAATGACTGCCTACATTTTTCGGGAAGCTTTCCATTGAGCCTTGTAAAGGCTCGGAAAGTTTCCCTTATTTTTCTGAAAATTCAACTTATTCTCTATTATTCGGTTCTTTCCAAAAATCCTTGCTGGAGGATATCGATGGACCCTCTTCTCCTCGTCCCTACATTAACCGATAGGATCCAGATGGCCCACCAGAGCTCAAGCGACAAAGAGATCCCGACTCGGACTTGGAGGAATCGGAGGACTCGGAACAATTGGAACACTCGAAGGACGATATGTCACCGCAGCTTCAACCCGAGCTCCCTGATGACCTAAACCGTC</canonical>
            <polymorphic>TCTGTTCGAAATTTGTCTATAAATTCTCATGAAACATTTTTTAACTTGTGTTTTGCAAAAAAGCTTCAGACTTCACAACTTTTCAGTTTCCCGATTTTTCAGTACTCCACTTCTCGACTTCTCGGCTTCCTGACTCCCGGATTTCTTGTTTTTCCGACCTCAAATTCCAAAGTTCGACTCCCGACTTTCTGCTTTTGTGGTTTCCCGAACTTTCCGTTTTCCCAATTTTCAGTTCTCTGCTTCCCGACAGTCTTTCAGTTTCATGACTACGAGACTTCTTGGTTTCCAGACGTCCTCATTTTGTTTATGGAATTCCGGATTCCAAATTCCAAATTCTCACTTCCGACTACCAAAATTTGAAATGTCAATTTCCAAAATCTGAGTGCTGACTTCGAACTCTGAAAACTTTCAAAATATAAAAATACCCCATCAAAAATTAATATTTTCAATTTGTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGTTTTGGTACTTKTTGCACCGTCTACCACCACTCCAGCATAACTTTCTGTCAAGGACAGATATACGAAAATACTCTCTTTCTCTACGTCTCCATCAGATCCATTCTGTTTCCGCCTGCTTTTCCGCCTGCTTCTATGTTTCCGCCTGCTTCGCCGTGCGAATCAATGTCACTCTCTTTGCTTGGCGGGCTGACAGAATGACTGCCTACATTTTTCGGGAAGCTTTCCATTGAGCCTTGTAAAGGCTCGGAAAGTTTCCCTTATTTTTCTGAAAATTCAACTTATTCTCTATTATTCGGTTCTTTCCAAAAATCCTTGCTGGAGGATATCGATGGACCCTCTTCTCCTCGTCCCTACATTAACCGATAGGATCCAGATGGCCCACCAGAGCTCAAGCGACAAAGAGATCCCGACTCGGACTTGGAGGAATCGGAGGACTCGGAACAATTGGAACACTCGAAGGACGATATGTCACCGCAGCTTCAACCCGAGCTCCCTGATGACCTAAACCGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAAATACCCCATCAAAAATTA</pcr_primer_p1>
		<pcr_primer_p2>AGCAAAGAGAGTGACATTGATT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAAAAATACCCCATCAAAAATTAATATTTTCAATTTGTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGTTTTGGTACTTGTTGCACCGTCTACCACCACTCCAGCATAACTTTCTGTCAAGGACAGATATACGAAAATACTCTCTTTCTCTACGTCTCCATCAGATCCATTCTGTTTCCGCCTGCTTTTCCGCCTGCTTCTATGTTTCCGCCTGCTTCGCCGTGCGAATCAATGTCACTCTCTTTGCT</canonical_amplicon>
		<polymorphic_amplicon>TAAAAATACCCCATCAAAAATTAATATTTTCAATTTGTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGTTTTGGTACTTKTTGCACCGTCTACCACCACTCCAGCATAACTTTCTGTCAAGGACAGATATACGAAAATACTCTCTTTCTCTACGTCTCCATCAGATCCATTCTGTTTCCGCCTGCTTTTCCGCCTGCTTCTATGTTTCCGCCTGCTTCGCCGTGCGAATCAATGTCACTCTCTTTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37444</snp_id>
        <super_contig>c012201017.Contig1</super_contig>
        <contig_pos>83937</contig_pos>
        <strand>+</strand>
        <context>TKTTGCACCG[A/T]CTACCACCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACAAAGACTCTTTGTATACGATTTCTCTCGTTTTGGTACTTGTTGCACCG</left_flank>
        <right_flank>CTACCACCACTCCAGCATAACTTTCTGTCAAGGACAGATATACGAAAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTGTCTATAAATTCTCATGAAACATTTTTTAACTTGTGTTTTGCAAAAAAGCTTCAGACTTCACAACTTTTCAGTTTCCCGATTTTTCAGTACTCCACTTCTCGACTTCTCGGCTTCCTGACTCCCGGATTTCTTGTTTTTCCGACCTCAAATTCCAAAGTTCGACTCCCGACTTTCTGCTTTTGTGGTTTCCCGAACTTTCCGTTTTCCCAATTTTCAGTTCTCTGCTTCCCGACAGTCTTTCAGTTTCATGACTACGAGACTTCTTGGTTTCCAGACGTCCTCATTTTGTTTATGGAATTCCGGATTCCAAATTCCAAATTCTCACTTCCGACTACCAAAATTTGAAATGTCAATTTCCAAAATCTGAGTGCTGACTTCGAACTCTGAAAACTTTCAAAATATAAAAATACCCCATCAAAAATTAATATTTTCAATTTGTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGTTTTGGTACTTGTTGCACCGTCTACCACCACTCCAGCATAACTTTCTGTCAAGGACAGATATACGAAAATACTCTCTTTCTCTACGTCTCCATCAGATCCATTCTGTTTCCGCCTGCTTTTCCGCCTGCTTCTATGTTTCCGCCTGCTTCGCCGTGCGAATCAATGTCACTCTCTTTGCTTGGCGGGCTGACAGAATGACTGCCTACATTTTTCGGGAAGCTTTCCATTGAGCCTTGTAAAGGCTCGGAAAGTTTCCCTTATTTTTCTGAAAATTCAACTTATTCTCTATTATTCGGTTCTTTCCAAAAATCCTTGCTGGAGGATATCGATGGACCCTCTTCTCCTCGTCCCTACATTAACCGATAGGATCCAGATGGCCCACCAGAGCTCAAGCGACAAAGAGATCCCGACTCGGACTTGGAGGAATCGGAGGACTCGGAACAATTGGAACACTCGAAGGACGATATGTCACCGCAGCTTCAACCCGAGCTCCCTGATGACCTAAACCGTCTTCTAGATA</canonical>
            <polymorphic>AATTTGTCTATAAATTCTCATGAAACATTTTTTAACTTGTGTTTTGCAAAAAAGCTTCAGACTTCACAACTTTTCAGTTTCCCGATTTTTCAGTACTCCACTTCTCGACTTCTCGGCTTCCTGACTCCCGGATTTCTTGTTTTTCCGACCTCAAATTCCAAAGTTCGACTCCCGACTTTCTGCTTTTGTGGTTTCCCGAACTTTCCGTTTTCCCAATTTTCAGTTCTCTGCTTCCCGACAGTCTTTCAGTTTCATGACTACGAGACTTCTTGGTTTCCAGACGTCCTCATTTTGTTTATGGAATTCCGGATTCCAAATTCCAAATTCTCACTTCCGACTACCAAAATTTGAAATGTCAATTTCCAAAATCTGAGTGCTGACTTCGAACTCTGAAAACTTTCAAAATATAAAAATACCCCATCAAAAATTAATATTTTCAATTTGTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGTTTTGGTACTTGTTGCACCGWCTACCACCACTCCAGCATAACTTTCTGTCAAGGACAGATATACGAAAATACTCTCTTTCTCTACGTCTCCATCAGATCCATTCTGTTTCCGCCTGCTTTTCCGCCTGCTTCTATGTTTCCGCCTGCTTCGCCGTGCGAATCAATGTCACTCTCTTTGCTTGGCGGGCTGACAGAATGACTGCCTACATTTTTCGGGAAGCTTTCCATTGAGCCTTGTAAAGGCTCGGAAAGTTTCCCTTATTTTTCTGAAAATTCAACTTATTCTCTATTATTCGGTTCTTTCCAAAAATCCTTGCTGGAGGATATCGATGGACCCTCTTCTCCTCGTCCCTACATTAACCGATAGGATCCAGATGGCCCACCAGAGCTCAAGCGACAAAGAGATCCCGACTCGGACTTGGAGGAATCGGAGGACTCGGAACAATTGGAACACTCGAAGGACGATATGTCACCGCAGCTTCAACCCGAGCTCCCTGATGACCTAAACCGTCTTCTAGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 464 36</canonical_bands>
                <polymorphic_bands>536 464</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>490 258 240 12</canonical_bands>
                <polymorphic_bands>748 240 12</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 465 36</canonical_bands>
                <polymorphic_bands>535 465</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAAATACCCCATCAAAAATTA</pcr_primer_p1>
		<pcr_primer_p2>AGCAAAGAGAGTGACATTGATT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAAAAATACCCCATCAAAAATTAATATTTTCAATTTGTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGTTTTGGTACTTGTTGCACCGTCTACCACCACTCCAGCATAACTTTCTGTCAAGGACAGATATACGAAAATACTCTCTTTCTCTACGTCTCCATCAGATCCATTCTGTTTCCGCCTGCTTTTCCGCCTGCTTCTATGTTTCCGCCTGCTTCGCCGTGCGAATCAATGTCACTCTCTTTGCT</canonical_amplicon>
		<polymorphic_amplicon>TAAAAATACCCCATCAAAAATTAATATTTTCAATTTGTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGTTTTGGTACTTGTTGCACCGWCTACCACCACTCCAGCATAACTTTCTGTCAAGGACAGATATACGAAAATACTCTCTTTCTCTACGTCTCCATCAGATCCATTCTGTTTCCGCCTGCTTTTCCGCCTGCTTCTATGTTTCCGCCTGCTTCGCCGTGCGAATCAATGTCACTCTCTTTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37445</snp_id>
        <super_contig>c012201017.Contig1</super_contig>
        <contig_pos>84028</contig_pos>
        <strand>+</strand>
        <context>TTCTGTTTCC[C/G]CCTGCTTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TACGAAAATACTCTCTTTCTCTACGTCTCCATCAGATCCATTCTGTTTCC</left_flank>
        <right_flank>CCTGCTTTTCCGCCTGCTTCTATGTTTCCGCCTGCTTCGCCGTGCGAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTACTCCACTTCTCGACTTCTCGGCTTCCTGACTCCCGGATTTCTTGTTTTTCCGACCTCAAATTCCAAAGTTCGACTCCCGACTTTCTGCTTTTGTGGTTTCCCGAACTTTCCGTTTTCCCAATTTTCAGTTCTCTGCTTCCCGACAGTCTTTCAGTTTCATGACTACGAGACTTCTTGGTTTCCAGACGTCCTCATTTTGTTTATGGAATTCCGGATTCCAAATTCCAAATTCTCACTTCCGACTACCAAAATTTGAAATGTCAATTTCCAAAATCTGAGTGCTGACTTCGAACTCTGAAAACTTTCAAAATATAAAAATACCCCATCAAAAATTAATATTTTCAATTTGTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGTTTTGGTACTTGTTGCACCGTCTACCACCACTCCAGCATAACTTTCTGTCAAGGACAGATATACGAAAATACTCTCTTTCTCTACGTCTCCATCAGATCCATTCTGTTTCCGCCTGCTTTTCCGCCTGCTTCTATGTTTCCGCCTGCTTCGCCGTGCGAATCAATGTCACTCTCTTTGCTTGGCGGGCTGACAGAATGACTGCCTACATTTTTCGGGAAGCTTTCCATTGAGCCTTGTAAAGGCTCGGAAAGTTTCCCTTATTTTTCTGAAAATTCAACTTATTCTCTATTATTCGGTTCTTTCCAAAAATCCTTGCTGGAGGATATCGATGGACCCTCTTCTCCTCGTCCCTACATTAACCGATAGGATCCAGATGGCCCACCAGAGCTCAAGCGACAAAGAGATCCCGACTCGGACTTGGAGGAATCGGAGGACTCGGAACAATTGGAACACTCGAAGGACGATATGTCACCGCAGCTTCAACCCGAGCTCCCTGATGACCTAAACCGTCTTCTAGATAAAGAGGACTACGATTTCGGGAATGCGATCCAAAACTGGATGGAAGATCCTGATCATTGGAACTTCCGAATGGACGGTCCTGTTTTTTGACA</canonical>
            <polymorphic>AGTACTCCACTTCTCGACTTCTCGGCTTCCTGACTCCCGGATTTCTTGTTTTTCCGACCTCAAATTCCAAAGTTCGACTCCCGACTTTCTGCTTTTGTGGTTTCCCGAACTTTCCGTTTTCCCAATTTTCAGTTCTCTGCTTCCCGACAGTCTTTCAGTTTCATGACTACGAGACTTCTTGGTTTCCAGACGTCCTCATTTTGTTTATGGAATTCCGGATTCCAAATTCCAAATTCTCACTTCCGACTACCAAAATTTGAAATGTCAATTTCCAAAATCTGAGTGCTGACTTCGAACTCTGAAAACTTTCAAAATATAAAAATACCCCATCAAAAATTAATATTTTCAATTTGTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGTTTTGGTACTTGTTGCACCGTCTACCACCACTCCAGCATAACTTTCTGTCAAGGACAGATATACGAAAATACTCTCTTTCTCTACGTCTCCATCAGATCCATTCTGTTTCCSCCTGCTTTTCCGCCTGCTTCTATGTTTCCGCCTGCTTCGCCGTGCGAATCAATGTCACTCTCTTTGCTTGGCGGGCTGACAGAATGACTGCCTACATTTTTCGGGAAGCTTTCCATTGAGCCTTGTAAAGGCTCGGAAAGTTTCCCTTATTTTTCTGAAAATTCAACTTATTCTCTATTATTCGGTTCTTTCCAAAAATCCTTGCTGGAGGATATCGATGGACCCTCTTCTCCTCGTCCCTACATTAACCGATAGGATCCAGATGGCCCACCAGAGCTCAAGCGACAAAGAGATCCCGACTCGGACTTGGAGGAATCGGAGGACTCGGAACAATTGGAACACTCGAAGGACGATATGTCACCGCAGCTTCAACCCGAGCTCCCTGATGACCTAAACCGTCTTCTAGATAAAGAGGACTACGATTTCGGGAATGCGATCCAAAACTGGATGGAAGATCCTGATCATTGGAACTTCCGAATGGACGGTCCTGTTTTTTGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>498 291 139 42 18 12</canonical_bands>
                <polymorphic_bands>510 291 139 42 18</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 427 41 18 12</canonical_bands>
                <polymorphic_bands>514 427 41 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAAAATACCCCATCAAAAATTA</pcr_primer_p1>
		<pcr_primer_p2>AGCAAAGAGAGTGACATTGATT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAAAAATACCCCATCAAAAATTAATATTTTCAATTTGTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGTTTTGGTACTTGTTGCACCGTCTACCACCACTCCAGCATAACTTTCTGTCAAGGACAGATATACGAAAATACTCTCTTTCTCTACGTCTCCATCAGATCCATTCTGTTTCCGCCTGCTTTTCCGCCTGCTTCTATGTTTCCGCCTGCTTCGCCGTGCGAATCAATGTCACTCTCTTTGCT</canonical_amplicon>
		<polymorphic_amplicon>TAAAAATACCCCATCAAAAATTAATATTTTCAATTTGTTCCCACAAAGACTCTTTGTATACGATTTCTCTCGTTTTGGTACTTGTTGCACCGTCTACCACCACTCCAGCATAACTTTCTGTCAAGGACAGATATACGAAAATACTCTCTTTCTCTACGTCTCCATCAGATCCATTCTGTTTCCSCCTGCTTTTCCGCCTGCTTCTATGTTTCCGCCTGCTTCGCCGTGCGAATCAATGTCACTCTCTTTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37446</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>11031</contig_pos>
        <strand>+</strand>
        <context>attaattatt[C/T]aaawastttt</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATT</left_flank>
        <right_flank>AAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGACTTGCAACGCCGCGGCGCAATTTTCTGTCGAATTTTTAGCCTTTCGAAAAAAAATATTTTTCGCCCATTTTTCTTCATTTTCGCTCAAATTTCCTCAATTTTTTGGGAATTTTTACTAGAAATTTAATTTTTTAAAGGCTCCGCCGCGTTGACAATGAGTCGGAACTCGAGCGGCAGTACCGCACCGCCCGGGAAGAGCTGAACCAGTGGAATTCGGATTTTTGGGCCGAGCACAATCAACTGTTCGATCGCCAAAAGTCGGAATTCGTCGAGAAGAAGCAGAAGGCGTTGGGACGGCTGGAACACGTGTCGGCGAACGAGCTCAGCGAGTTTTATCGCGATTTTCTCAACGATCGGCATGTGGCGATGATGGCTTATAATAAGTGGGTGGATAATTAGGCGGGAATTTGAATTCGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTT</canonical>
            <polymorphic>CGACTTGCAACGCCGCGGCGCAATTTTCTGTCGAATTTTTAGCCTTTCGAAAAAAAATATTTTTCGCCCATTTTTCTTCATTTTCGCTCAAATTTCCTCAATTTTTTGGGAATTTTTACTAGAAATTTAATTTTTTAAAGGCTCCGCCGCGTTGACAATGAGTCGGAACTCGAGCGGCAGTACCGCACCGCCCGGGAAGAGCTGAACCAGTGGAATTCGGATTTTTGGGCCGAGCACAATCAACTGTTCGATCGCCAAAAGTCGGAATTCGTCGAGAAGAAGCAGAAGGCGTTGGGACGGCTGGAACACGTGTCGGCGAACGAGCTCAGCGAGTTTTATCGCGATTTTCTCAACGATCGGCATGTGGCGATGATGGCTTATAATAAGTGGGTGGATAATTAGGCGGGAATTTGAATTCGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTYAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>293 288 133 127 68 64 12 8 7</canonical_bands>
                <polymorphic_bands>293 288 133 127 68 64 19 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTATCGCGATTTTCTCA</pcr_primer_p1>
		<pcr_primer_p2>TTTAAATTTCCAGATTTTCAGGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTTTATCGCGATTTTCTCAACGATCGGCATGTGGCGATGATGGCTTATAATAAGTGGGTGGATAATTAGGCGGGAATTTGAATTCGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAA</canonical_amplicon>
		<polymorphic_amplicon>GTTTTATCGCGATTTTCTCAACGATCGGCATGTGGCGATGATGGCTTATAATAAGTGGGTGGATAATTAGGCGGGAATTTGAATTCGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTYAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37447</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>11035</contig_pos>
        <strand>+</strand>
        <context>attattyaaa[A/T]astttttaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAA</left_flank>
        <right_flank>AATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCAACGCCGCGGCGCAATTTTCTGTCGAATTTTTAGCCTTTCGAAAAAAAATATTTTTCGCCCATTTTTCTTCATTTTCGCTCAAATTTCCTCAATTTTTTGGGAATTTTTACTAGAAATTTAATTTTTTAAAGGCTCCGCCGCGTTGACAATGAGTCGGAACTCGAGCGGCAGTACCGCACCGCCCGGGAAGAGCTGAACCAGTGGAATTCGGATTTTTGGGCCGAGCACAATCAACTGTTCGATCGCCAAAAGTCGGAATTCGTCGAGAAGAAGCAGAAGGCGTTGGGACGGCTGGAACACGTGTCGGCGAACGAGCTCAGCGAGTTTTATCGCGATTTTCTCAACGATCGGCATGTGGCGATGATGGCTTATAATAAGTGGGTGGATAATTAGGCGGGAATTTGAATTCGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAAT</canonical>
            <polymorphic>TTGCAACGCCGCGGCGCAATTTTCTGTCGAATTTTTAGCCTTTCGAAAAAAAATATTTTTCGCCCATTTTTCTTCATTTTCGCTCAAATTTCCTCAATTTTTTGGGAATTTTTACTAGAAATTTAATTTTTTAAAGGCTCCGCCGCGTTGACAATGAGTCGGAACTCGAGCGGCAGTACCGCACCGCCCGGGAAGAGCTGAACCAGTGGAATTCGGATTTTTGGGCCGAGCACAATCAACTGTTCGATCGCCAAAAGTCGGAATTCGTCGAGAAGAAGCAGAAGGCGTTGGGACGGCTGGAACACGTGTCGGCGAACGAGCTCAGCGAGTTTTATCGCGATTTTCTCAACGATCGGCATGTGGCGATGATGGCTTATAATAAGTGGGTGGATAATTAGGCGGGAATTTGAATTCGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAWAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>142 113 105 90 66 57 52 50 48 48 42 38 38 29 24 20 19 13 6</canonical_bands>
                <polymorphic_bands>142 114 113 105 90 57 52 50 48 42 38 38 29 24 20 19 13 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTATCGCGATTTTCTCA</pcr_primer_p1>
		<pcr_primer_p2>TTTAAATTTCCAGATTTTCAGGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTTTATCGCGATTTTCTCAACGATCGGCATGTGGCGATGATGGCTTATAATAAGTGGGTGGATAATTAGGCGGGAATTTGAATTCGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAA</canonical_amplicon>
		<polymorphic_amplicon>GTTTTATCGCGATTTTCTCAACGATCGGCATGTGGCGATGATGGCTTATAATAAGTGGGTGGATAATTAGGCGGGAATTTGAATTCGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAWAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37448</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>11037</contig_pos>
        <strand>+</strand>
        <context>tattyaaawa[C/G]tttttaaaWC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAA</left_flank>
        <right_flank>TTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAACGCCGCGGCGCAATTTTCTGTCGAATTTTTAGCCTTTCGAAAAAAAATATTTTTCGCCCATTTTTCTTCATTTTCGCTCAAATTTCCTCAATTTTTTGGGAATTTTTACTAGAAATTTAATTTTTTAAAGGCTCCGCCGCGTTGACAATGAGTCGGAACTCGAGCGGCAGTACCGCACCGCCCGGGAAGAGCTGAACCAGTGGAATTCGGATTTTTGGGCCGAGCACAATCAACTGTTCGATCGCCAAAAGTCGGAATTCGTCGAGAAGAAGCAGAAGGCGTTGGGACGGCTGGAACACGTGTCGGCGAACGAGCTCAGCGAGTTTTATCGCGATTTTCTCAACGATCGGCATGTGGCGATGATGGCTTATAATAAGTGGGTGGATAATTAGGCGGGAATTTGAATTCGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCA</canonical>
            <polymorphic>GCAACGCCGCGGCGCAATTTTCTGTCGAATTTTTAGCCTTTCGAAAAAAAATATTTTTCGCCCATTTTTCTTCATTTTCGCTCAAATTTCCTCAATTTTTTGGGAATTTTTACTAGAAATTTAATTTTTTAAAGGCTCCGCCGCGTTGACAATGAGTCGGAACTCGAGCGGCAGTACCGCACCGCCCGGGAAGAGCTGAACCAGTGGAATTCGGATTTTTGGGCCGAGCACAATCAACTGTTCGATCGCCAAAAGTCGGAATTCGTCGAGAAGAAGCAGAAGGCGTTGGGACGGCTGGAACACGTGTCGGCGAACGAGCTCAGCGAGTTTTATCGCGATTTTCTCAACGATCGGCATGTGGCGATGATGGCTTATAATAAGTGGGTGGATAATTAGGCGGGAATTTGAATTCGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAASTTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>142 113 105 90 66 57 52 50 50 48 42 38 38 27 24 20 19 13 6</canonical_bands>
                <polymorphic_bands>142 114 113 105 90 57 52 50 50 42 38 38 27 24 20 19 13 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>131 105 85 57 55 52 50 50 43 42 38 38 32 31 27 24 23 19 15 13 12 12 11 11 9 6 5 4</canonical_bands>
                <polymorphic_bands>131 105 85 57 55 52 50 50 43 42 38 38 35 32 31 27 24 19 15 13 12 11 11 9 6 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTATCGCGATTTTCTCA</pcr_primer_p1>
		<pcr_primer_p2>TTTAAATTTCCAGATTTTCAGGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTTTATCGCGATTTTCTCAACGATCGGCATGTGGCGATGATGGCTTATAATAAGTGGGTGGATAATTAGGCGGGAATTTGAATTCGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAA</canonical_amplicon>
		<polymorphic_amplicon>GTTTTATCGCGATTTTCTCAACGATCGGCATGTGGCGATGATGGCTTATAATAAGTGGGTGGATAATTAGGCGGGAATTTGAATTCGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAASTTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37449</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>11046</contig_pos>
        <strand>+</strand>
        <context>astttttaaa[A/T]CCCAGTTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAA</left_flank>
        <right_flank>CCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGCGCAATTTTCTGTCGAATTTTTAGCCTTTCGAAAAAAAATATTTTTCGCCCATTTTTCTTCATTTTCGCTCAAATTTCCTCAATTTTTTGGGAATTTTTACTAGAAATTTAATTTTTTAAAGGCTCCGCCGCGTTGACAATGAGTCGGAACTCGAGCGGCAGTACCGCACCGCCCGGGAAGAGCTGAACCAGTGGAATTCGGATTTTTGGGCCGAGCACAATCAACTGTTCGATCGCCAAAAGTCGGAATTCGTCGAGAAGAAGCAGAAGGCGTTGGGACGGCTGGAACACGTGTCGGCGAACGAGCTCAGCGAGTTTTATCGCGATTTTCTCAACGATCGGCATGTGGCGATGATGGCTTATAATAAGTGGGTGGATAATTAGGCGGGAATTTGAATTCGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGC</canonical>
            <polymorphic>CGGCGCAATTTTCTGTCGAATTTTTAGCCTTTCGAAAAAAAATATTTTTCGCCCATTTTTCTTCATTTTCGCTCAAATTTCCTCAATTTTTTGGGAATTTTTACTAGAAATTTAATTTTTTAAAGGCTCCGCCGCGTTGACAATGAGTCGGAACTCGAGCGGCAGTACCGCACCGCCCGGGAAGAGCTGAACCAGTGGAATTCGGATTTTTGGGCCGAGCACAATCAACTGTTCGATCGCCAAAAGTCGGAATTCGTCGAGAAGAAGCAGAAGGCGTTGGGACGGCTGGAACACGTGTCGGCGAACGAGCTCAGCGAGTTTTATCGCGATTTTCTCAACGATCGGCATGTGGCGATGATGGCTTATAATAAGTGGGTGGATAATTAGGCGGGAATTTGAATTCGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAWCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>192 110 99 84 84 71 70 60 55 52 44 28 27 24</canonical_bands>
                <polymorphic_bands>194 192 99 84 71 70 60 55 52 44 28 27 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTATCGCGATTTTCTCA</pcr_primer_p1>
		<pcr_primer_p2>TTTAAATTTCCAGATTTTCAGGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTTTATCGCGATTTTCTCAACGATCGGCATGTGGCGATGATGGCTTATAATAAGTGGGTGGATAATTAGGCGGGAATTTGAATTCGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAA</canonical_amplicon>
		<polymorphic_amplicon>GTTTTATCGCGATTTTCTCAACGATCGGCATGTGGCGATGATGGCTTATAATAAGTGGGTGGATAATTAGGCGGGAATTTGAATTCGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAWCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37450</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>11057</contig_pos>
        <strand>+</strand>
        <context>CCCAGTTTTC[C/G]CAATTTTCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTC</left_flank>
        <right_flank>CAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGTCGAATTTTTAGCCTTTCGAAAAAAAATATTTTTCGCCCATTTTTCTTCATTTTCGCTCAAATTTCCTCAATTTTTTGGGAATTTTTACTAGAAATTTAATTTTTTAAAGGCTCCGCCGCGTTGACAATGAGTCGGAACTCGAGCGGCAGTACCGCACCGCCCGGGAAGAGCTGAACCAGTGGAATTCGGATTTTTGGGCCGAGCACAATCAACTGTTCGATCGCCAAAAGTCGGAATTCGTCGAGAAGAAGCAGAAGGCGTTGGGACGGCTGGAACACGTGTCGGCGAACGAGCTCAGCGAGTTTTATCGCGATTTTCTCAACGATCGGCATGTGGCGATGATGGCTTATAATAAGTGGGTGGATAATTAGGCGGGAATTTGAATTCGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCT</canonical>
            <polymorphic>TCTGTCGAATTTTTAGCCTTTCGAAAAAAAATATTTTTCGCCCATTTTTCTTCATTTTCGCTCAAATTTCCTCAATTTTTTGGGAATTTTTACTAGAAATTTAATTTTTTAAAGGCTCCGCCGCGTTGACAATGAGTCGGAACTCGAGCGGCAGTACCGCACCGCCCGGGAAGAGCTGAACCAGTGGAATTCGGATTTTTGGGCCGAGCACAATCAACTGTTCGATCGCCAAAAGTCGGAATTCGTCGAGAAGAAGCAGAAGGCGTTGGGACGGCTGGAACACGTGTCGGCGAACGAGCTCAGCGAGTTTTATCGCGATTTTCTCAACGATCGGCATGTGGCGATGATGGCTTATAATAAGTGGGTGGATAATTAGGCGGGAATTTGAATTCGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCSCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTGATTAAAATAGCCAGAAA</pcr_primer_p1>
		<pcr_primer_p2>AGCTCTTCTAATCGAGGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCT</canonical_amplicon>
		<polymorphic_amplicon>CGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCSCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37451</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>11068</contig_pos>
        <strand>+</strand>
        <context>CAATTTTCAA[A/G]GACWARATCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAA</left_flank>
        <right_flank>GACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAGCCTTTCGAAAAAAAATATTTTTCGCCCATTTTTCTTCATTTTCGCTCAAATTTCCTCAATTTTTTGGGAATTTTTACTAGAAATTTAATTTTTTAAAGGCTCCGCCGCGTTGACAATGAGTCGGAACTCGAGCGGCAGTACCGCACCGCCCGGGAAGAGCTGAACCAGTGGAATTCGGATTTTTGGGCCGAGCACAATCAACTGTTCGATCGCCAAAAGTCGGAATTCGTCGAGAAGAAGCAGAAGGCGTTGGGACGGCTGGAACACGTGTCGGCGAACGAGCTCAGCGAGTTTTATCGCGATTTTCTCAACGATCGGCATGTGGCGATGATGGCTTATAATAAGTGGGTGGATAATTAGGCGGGAATTTGAATTCGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGA</canonical>
            <polymorphic>TTTAGCCTTTCGAAAAAAAATATTTTTCGCCCATTTTTCTTCATTTTCGCTCAAATTTCCTCAATTTTTTGGGAATTTTTACTAGAAATTTAATTTTTTAAAGGCTCCGCCGCGTTGACAATGAGTCGGAACTCGAGCGGCAGTACCGCACCGCCCGGGAAGAGCTGAACCAGTGGAATTCGGATTTTTGGGCCGAGCACAATCAACTGTTCGATCGCCAAAAGTCGGAATTCGTCGAGAAGAAGCAGAAGGCGTTGGGACGGCTGGAACACGTGTCGGCGAACGAGCTCAGCGAGTTTTATCGCGATTTTCTCAACGATCGGCATGTGGCGATGATGGCTTATAATAAGTGGGTGGATAATTAGGCGGGAATTTGAATTCGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAARGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTGATTAAAATAGCCAGAAA</pcr_primer_p1>
		<pcr_primer_p2>AGCTCTTCTAATCGAGGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCT</canonical_amplicon>
		<polymorphic_amplicon>CGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAARGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37452</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>11072</contig_pos>
        <strand>+</strand>
        <context>TTTCAARGAC[A/T]ARATCGGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGAC</left_flank>
        <right_flank>AAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCTTTCGAAAAAAAATATTTTTCGCCCATTTTTCTTCATTTTCGCTCAAATTTCCTCAATTTTTTGGGAATTTTTACTAGAAATTTAATTTTTTAAAGGCTCCGCCGCGTTGACAATGAGTCGGAACTCGAGCGGCAGTACCGCACCGCCCGGGAAGAGCTGAACCAGTGGAATTCGGATTTTTGGGCCGAGCACAATCAACTGTTCGATCGCCAAAAGTCGGAATTCGTCGAGAAGAAGCAGAAGGCGTTGGGACGGCTGGAACACGTGTCGGCGAACGAGCTCAGCGAGTTTTATCGCGATTTTCTCAACGATCGGCATGTGGCGATGATGGCTTATAATAAGTGGGTGGATAATTAGGCGGGAATTTGAATTCGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTT</canonical>
            <polymorphic>GCCTTTCGAAAAAAAATATTTTTCGCCCATTTTTCTTCATTTTCGCTCAAATTTCCTCAATTTTTTGGGAATTTTTACTAGAAATTTAATTTTTTAAAGGCTCCGCCGCGTTGACAATGAGTCGGAACTCGAGCGGCAGTACCGCACCGCCCGGGAAGAGCTGAACCAGTGGAATTCGGATTTTTGGGCCGAGCACAATCAACTGTTCGATCGCCAAAAGTCGGAATTCGTCGAGAAGAAGCAGAAGGCGTTGGGACGGCTGGAACACGTGTCGGCGAACGAGCTCAGCGAGTTTTATCGCGATTTTCTCAACGATCGGCATGTGGCGATGATGGCTTATAATAAGTGGGTGGATAATTAGGCGGGAATTTGAATTCGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACWAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTGATTAAAATAGCCAGAAA</pcr_primer_p1>
		<pcr_primer_p2>AGCTCTTCTAATCGAGGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCT</canonical_amplicon>
		<polymorphic_amplicon>CGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACWAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37453</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>11074</contig_pos>
        <strand>+</strand>
        <context>TCAARGACWA[A/G]ATCGGAGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAA</left_flank>
        <right_flank>ATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTCGAAAAAAAATATTTTTCGCCCATTTTTCTTCATTTTCGCTCAAATTTCCTCAATTTTTTGGGAATTTTTACTAGAAATTTAATTTTTTAAAGGCTCCGCCGCGTTGACAATGAGTCGGAACTCGAGCGGCAGTACCGCACCGCCCGGGAAGAGCTGAACCAGTGGAATTCGGATTTTTGGGCCGAGCACAATCAACTGTTCGATCGCCAAAAGTCGGAATTCGTCGAGAAGAAGCAGAAGGCGTTGGGACGGCTGGAACACGTGTCGGCGAACGAGCTCAGCGAGTTTTATCGCGATTTTCTCAACGATCGGCATGTGGCGATGATGGCTTATAATAAGTGGGTGGATAATTAGGCGGGAATTTGAATTCGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCA</canonical>
            <polymorphic>CTTTCGAAAAAAAATATTTTTCGCCCATTTTTCTTCATTTTCGCTCAAATTTCCTCAATTTTTTGGGAATTTTTACTAGAAATTTAATTTTTTAAAGGCTCCGCCGCGTTGACAATGAGTCGGAACTCGAGCGGCAGTACCGCACCGCCCGGGAAGAGCTGAACCAGTGGAATTCGGATTTTTGGGCCGAGCACAATCAACTGTTCGATCGCCAAAAGTCGGAATTCGTCGAGAAGAAGCAGAAGGCGTTGGGACGGCTGGAACACGTGTCGGCGAACGAGCTCAGCGAGTTTTATCGCGATTTTCTCAACGATCGGCATGTGGCGATGATGGCTTATAATAAGTGGGTGGATAATTAGGCGGGAATTTGAATTCGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAARATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTGATTAAAATAGCCAGAAA</pcr_primer_p1>
		<pcr_primer_p2>AGCTCTTCTAATCGAGGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCT</canonical_amplicon>
		<polymorphic_amplicon>CGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAARATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37454</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>11420</contig_pos>
        <strand>+</strand>
        <context>TTCGACAAAA[A/G]TTGACCGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAA</left_flank>
        <right_flank>TTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTGGATAATTAGGCGGGAATTTGAATTCGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAA</canonical>
            <polymorphic>GGTGGATAATTAGGCGGGAATTTGAATTCGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAARTTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>114 105 96 70 55 50 47 43 42 38 38 33 32 31 27 24 23 20 19 14 13 12 12 11 9 7 6 5 4</canonical_bands>
                <polymorphic_bands>114 105 96 86 70 50 47 43 42 38 38 33 32 27 24 23 20 19 14 13 12 12 11 9 7 6 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGAGTCATTTACCACTATTTTC</pcr_primer_p1>
		<pcr_primer_p2>TCTTTTTGCCTAAAAATGATTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAARTTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37455</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>11432</contig_pos>
        <strand>+</strand>
        <context>TGACCGAAAA[G/T]CACCCGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAA</left_flank>
        <right_flank>CACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCGGGAATTTGAATTCGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTTCTTTTTGCG</canonical>
            <polymorphic>GGCGGGAATTTGAATTCGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAKCACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTTCTTTTTGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAGTCATTTACCACTATTTTC</pcr_primer_p1>
		<pcr_primer_p2>TCTTTTTGCCTAAAAATGATTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAKCACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37456</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>11443</contig_pos>
        <strand>+</strand>
        <context>CACCCGAAAA[A/G]TGAGCGAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAA</left_flank>
        <right_flank>TGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTCGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTTCTTTTTGCGATTTTTGATTT</canonical>
            <polymorphic>GAATTCGTGATTAAAATAGCCAGAAAATTCATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAARTGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTTCTTTTTGCGATTTTTGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAGTCATTTACCACTATTTTC</pcr_primer_p1>
		<pcr_primer_p2>TCTTTTTGCCTAAAAATGATTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAARTGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37457</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>11473</contig_pos>
        <strand>+</strand>
        <context>CTGGCGTGCC[G/T]TTGGCGCGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCC</left_flank>
        <right_flank>TTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTTCTTTTTGCGATTTTTGATTTTTCCCTTATTTTCTGTTCGTCGTAGATTTT</canonical>
            <polymorphic>ATGGAAATCGAAAAAATTCCCCAAAAAAATGGTTTTTCGGGAAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCKTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTTCTTTTTGCGATTTTTGATTTTTCCCTTATTTTCTGTTCGTCGTAGATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTGAAAGTTTCGACAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAGTGTGCTAATCATGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCKTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37458</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>11514</contig_pos>
        <strand>+</strand>
        <context>GCGTTTTTGA[G/T]YTRTTTTAGR</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGA</left_flank>
        <right_flank>CTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTTCTTTTTGCGATTTTTGATTTTTCCCTTATTTTCTGTTCGTCGTAGATTTTTCCCCCGTTTTTTCTAGCTTTCTTCCCTATAAAATCGTTAT</canonical>
            <polymorphic>AAAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGAKCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTTCTTTTTGCGATTTTTGATTTTTCCCTTATTTTCTGTTCGTCGTAGATTTTTCCCCCGTTTTTTCTAGCTTTCTTCCCTATAAAATCGTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>503 305 192</canonical_bands>
                <polymorphic_bands>808 192</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTGAAAGTTTCGACAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAGTGTGCTAATCATGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGAKCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37459</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>11515</contig_pos>
        <strand>+</strand>
        <context>CGTTTTTGAK[C/T]TRTTTTAGRG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGAT</left_flank>
        <right_flank>TGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTTCTTTTTGCGATTTTTGATTTTTCCCTTATTTTCTGTTCGTCGTAGATTTTTCCCCCGTTTTTTCTAGCTTTCTTCCCTATAAAATCGTTATT</canonical>
            <polymorphic>AAAAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATYTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTTCTTTTTGCGATTTTTGATTTTTCCCTTATTTTCTGTTCGTCGTAGATTTTTCCCCCGTTTTTTCTAGCTTTCTTCCCTATAAAATCGTTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>504 305 191</canonical_bands>
                <polymorphic_bands>809 191</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTGAAAGTTTCGACAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAGTGTGCTAATCATGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATYTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37460</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>11517</contig_pos>
        <strand>+</strand>
        <context>TTTTTGAKYT[A/G]TTTTAGRGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCT</left_flank>
        <right_flank>TTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTTCTTTTTGCGATTTTTGATTTTTCCCTTATTTTCTGTTCGTCGTAGATTTTTCCCCCGTTTTTTCTAGCTTTCTTCCCTATAAAATCGTTATTTT</canonical>
            <polymorphic>AAAATTAATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTRTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTTCTTTTTGCGATTTTTGATTTTTCCCTTATTTTCTGTTCGTCGTAGATTTTTCCCCCGTTTTTTCTAGCTTTCTTCCCTATAAAATCGTTATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTGAAAGTTTCGACAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAGTGTGCTAATCATGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTRTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37461</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>11524</contig_pos>
        <strand>+</strand>
        <context>KYTRTTTTAG[A/G]GCATTTTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAG</left_flank>
        <right_flank>GCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTTCTTTTTGCGATTTTTGATTTTTCCCTTATTTTCTGTTCGTCGTAGATTTTTCCCCCGTTTTTTCTAGCTTTCTTCCCTATAAAATCGTTATTTTATCGCTT</canonical>
            <polymorphic>ATTATTAAAAAAATTTTTAAAGCCCAGTTTTCCCAATTTTCAAAGACAAAATCGGAGAAACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGRGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTTCTTTTTGCGATTTTTGATTTTTCCCTTATTTTCTGTTCGTCGTAGATTTTTCCCCCGTTTTTTCTAGCTTTCTTCCCTATAAAATCGTTATTTTATCGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTGAAAGTTTCGACAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAGTGTGCTAATCATGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGRGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37462</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>11583</contig_pos>
        <strand>+</strand>
        <context>CAGCTCATTC[C/T]AGCTGAGGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTC</left_flank>
        <right_flank>AGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTTCTTTTTGCGATTTTTGATTTTTCCCTTATTTTCTGTTCGTCGTAGATTTTTCCCCCGTTTTTTCTAGCTTTCTTCCCTATAAAATCGTTATTTTATCGCTTTTTTTCGAAATTTTTCTCGGTTTCCAGCCGATTTTCTATCTATTTTTTGTGATTTTTCT</canonical>
            <polymorphic>ACAACCTGAAAATCTGGAAATTTAAACGGAAATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCYAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTTCTTTTTGCGATTTTTGATTTTTCCCTTATTTTCTGTTCGTCGTAGATTTTTCCCCCGTTTTTTCTAGCTTTCTTCCCTATAAAATCGTTATTTTATCGCTTTTTTTCGAAATTTTTCTCGGTTTCCAGCCGATTTTCTATCTATTTTTTGTGATTTTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTGAAAGTTTCGACAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAAGTGTGCTAATCATGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCYAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37463</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>11614</contig_pos>
        <strand>+</strand>
        <context>TTTGGCTTCA[A/T]RAATTCAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCA</left_flank>
        <right_flank>AAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTTCTTTTTGCGATTTTTGATTTTTCCCTTATTTTCTGTTCGTCGTAGATTTTTCCCCCGTTTTTTCTAGCTTTCTTCCCTATAAAATCGTTATTTTATCGCTTTTTTTCGAAATTTTTCTCGGTTTCCAGCCGATTTTCTATCTATTTTTTGTGATTTTTCTTCCTTTTTCTTTGAAATTGGAGCCTAATTTC</canonical>
            <polymorphic>ATCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAWAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTTCTTTTTGCGATTTTTGATTTTTCCCTTATTTTCTGTTCGTCGTAGATTTTTCCCCCGTTTTTTCTAGCTTTCTTCCCTATAAAATCGTTATTTTATCGCTTTTTTTCGAAATTTTTCTCGGTTTCCAGCCGATTTTCTATCTATTTTTTGTGATTTTTCTTCCTTTTTCTTTGAAATTGGAGCCTAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTGGAATTCCTTGATTAGA</pcr_primer_p1>
		<pcr_primer_p2>AATTTCGAAAAATCGCTGTA</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>GTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAWAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37464</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>11615</contig_pos>
        <strand>+</strand>
        <context>TTGGCTTCAW[A/G]AATTCAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAA</left_flank>
        <right_flank>AATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTTCTTTTTGCGATTTTTGATTTTTCCCTTATTTTCTGTTCGTCGTAGATTTTTCCCCCGTTTTTTCTAGCTTTCTTCCCTATAAAATCGTTATTTTATCGCTTTTTTTCGAAATTTTTCTCGGTTTCCAGCCGATTTTCTATCTATTTTTTGTGATTTTTCTTCCTTTTTCTTTGAAATTGGAGCCTAATTTCC</canonical>
            <polymorphic>TCGACCTAAAACCGCTCGAAAAATGAGAAATTTCCATGTGGCTGGCGTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAARAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTTCTTTTTGCGATTTTTGATTTTTCCCTTATTTTCTGTTCGTCGTAGATTTTTCCCCCGTTTTTTCTAGCTTTCTTCCCTATAAAATCGTTATTTTATCGCTTTTTTTCGAAATTTTTCTCGGTTTCCAGCCGATTTTCTATCTATTTTTTGTGATTTTTCTTCCTTTTTCTTTGAAATTGGAGCCTAATTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>208 114 113 105 89 83 75 50 38 38 28 20 14 13 12</canonical_bands>
                <polymorphic_bands>208 114 113 105 89 89 83 50 38 38 28 20 13 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTTGGAATTCCTTGATTAGA</pcr_primer_p1>
		<pcr_primer_p2>AATTTCGAAAAATCGCTGTA</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>GTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAARAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37465</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>11661</contig_pos>
        <strand>+</strand>
        <context>TTTTTGAGTC[A/G]TTATTCACGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTC</left_flank>
        <right_flank>TTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTTCTTTTTGCGATTTTTGATTTTTCCCTTATTTTCTGTTCGTCGTAGATTTTTCCCCCGTTTTTTCTAGCTTTCTTCCCTATAAAATCGTTATTTTATCGCTTTTTTTCGAAATTTTTCTCGGTTTCCAGCCGATTTTCTATCTATTTTTTGTGATTTTTCTTCCTTTTTCTTTGAAATTGGAGCCTAATTTCCATTCAGATGGCACCTGGGAAACGTACAGGCGCTGCCAAAGGCTCGC</canonical>
            <polymorphic>GTGCCTTCAGCGCTTTTCGAAATTCCTCGATTAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCRTTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTTCTTTTTGCGATTTTTGATTTTTCCCTTATTTTCTGTTCGTCGTAGATTTTTCCCCCGTTTTTTCTAGCTTTCTTCCCTATAAAATCGTTATTTTATCGCTTTTTTTCGAAATTTTTCTCGGTTTCCAGCCGATTTTCTATCTATTTTTTGTGATTTTTCTTCCTTTTTCTTTGAAATTGGAGCCTAATTTCCATTCAGATGGCACCTGGGAAACGTACAGGCGCTGCCAAAGGCTCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTGGAATTCCTTGATTAGA</pcr_primer_p1>
		<pcr_primer_p2>AATTTCGAAAAATCGCTGTA</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>GTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATT</canonical_amplicon>
		<polymorphic_amplicon>GTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCRTTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37466</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>11692</contig_pos>
        <strand>+</strand>
        <context>ATTAGGTGAA[A/T]TTTACAGCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAA</left_flank>
        <right_flank>TTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTTCTTTTTGCGATTTTTGATTTTTCCCTTATTTTCTGTTCGTCGTAGATTTTTCCCCCGTTTTTTCTAGCTTTCTTCCCTATAAAATCGTTATTTTATCGCTTTTTTTCGAAATTTTTCTCGGTTTCCAGCCGATTTTCTATCTATTTTTTGTGATTTTTCTTCCTTTTTCTTTGAAATTGGAGCCTAATTTCCATTCAGATGGCACCTGGGAAACGTACAGGCGCTGCCAAAGGCTCGCGTCACAACAAAAAGTATTGGAGAAAGGGAAC</canonical>
            <polymorphic>TAGAAGAGCTTTCGGATCATTTTAGAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAWTTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTTCTTTTTGCGATTTTTGATTTTTCCCTTATTTTCTGTTCGTCGTAGATTTTTCCCCCGTTTTTTCTAGCTTTCTTCCCTATAAAATCGTTATTTTATCGCTTTTTTTCGAAATTTTTCTCGGTTTCCAGCCGATTTTCTATCTATTTTTTGTGATTTTTCTTCCTTTTTCTTTGAAATTGGAGCCTAATTTCCATTCAGATGGCACCTGGGAAACGTACAGGCGCTGCCAAAGGCTCGCGTCACAACAAAAAGTATTGGAGAAAGGGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>208 160 114 113 105 89 75 39 38 20 14 13 12</canonical_bands>
                <polymorphic_bands>208 160 114 113 105 95 89 39 38 14 13 12</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>114 114 105 94 84 70 65 55 47 39 38 33 31 27 20 14 13 12 11 9 5</canonical_bands>
                <polymorphic_bands>114 114 105 94 90 84 65 55 47 39 38 33 31 27 14 13 12 11 9 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCATGATTAGCACACTTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATCTGACGACGTTGACTTTG</pcr_primer_p2>
		<pcr_amplicon_size>275</pcr_amplicon_size>
		<canonical_amplicon>TTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGAT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAWTTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37467</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>11716</contig_pos>
        <strand>+</strand>
        <context>TTCGAAATTT[C/T]GTGCCAAATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTT</left_flank>
        <right_flank>GTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTTCTTTTTGCGATTTTTGATTTTTCCCTTATTTTCTGTTCGTCGTAGATTTTTCCCCCGTTTTTTCTAGCTTTCTTCCCTATAAAATCGTTATTTTATCGCTTTTTTTCGAAATTTTTCTCGGTTTCCAGCCGATTTTCTATCTATTTTTTGTGATTTTTCTTCCTTTTTCTTTGAAATTGGAGCCTAATTTCCATTCAGATGGCACCTGGGAAACGTACAGGCGCTGCCAAAGGCTCGCGTCACAACAAAAAGTATTGGAGAAAGGGAACGGACATTACCGATATTGAGGATGC</canonical>
            <polymorphic>GAGCATTTTTATTAGAATTTTTTAATGATTTTGGACGATTTTTGAACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTYGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTTCTTTTTGCGATTTTTGATTTTTCCCTTATTTTCTGTTCGTCGTAGATTTTTCCCCCGTTTTTTCTAGCTTTCTTCCCTATAAAATCGTTATTTTATCGCTTTTTTTCGAAATTTTTCTCGGTTTCCAGCCGATTTTCTATCTATTTTTTGTGATTTTTCTTCCTTTTTCTTTGAAATTGGAGCCTAATTTCCATTCAGATGGCACCTGGGAAACGTACAGGCGCTGCCAAAGGCTCGCGTCACAACAAAAAGTATTGGAGAAAGGGAACGGACATTACCGATATTGAGGATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCATGATTAGCACACTTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATCTGACGACGTTGACTTTG</pcr_primer_p2>
		<pcr_amplicon_size>275</pcr_amplicon_size>
		<canonical_amplicon>TTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGAT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTYGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37468</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>11760</contig_pos>
        <strand>+</strand>
        <context>TGCGTTTTTC[A/T]ACTGAAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTC</left_flank>
        <right_flank>ACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTTCTTTTTGCGATTTTTGATTTTTCCCTTATTTTCTGTTCGTCGTAGATTTTTCCCCCGTTTTTTCTAGCTTTCTTCCCTATAAAATCGTTATTTTATCGCTTTTTTTCGAAATTTTTCTCGGTTTCCAGCCGATTTTCTATCTATTTTTTGTGATTTTTCTTCCTTTTTCTTTGAAATTGGAGCCTAATTTCCATTCAGATGGCACCTGGGAAACGTACAGGCGCTGCCAAAGGCTCGCGTCACAACAAAAAGTATTGGAGAAAGGGAACGGACATTACCGATATTGAGGATGCGATTCGTGAGTGGAATTTGCGGAAAAAGCGCGAAAATTGAGCTA</canonical>
            <polymorphic>AACATTTTCAAGCAAAAAGCACCTTATTGTCAACTTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCWACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTTCTTTTTGCGATTTTTGATTTTTCCCTTATTTTCTGTTCGTCGTAGATTTTTCCCCCGTTTTTTCTAGCTTTCTTCCCTATAAAATCGTTATTTTATCGCTTTTTTTCGAAATTTTTCTCGGTTTCCAGCCGATTTTCTATCTATTTTTTGTGATTTTTCTTCCTTTTTCTTTGAAATTGGAGCCTAATTTCCATTCAGATGGCACCTGGGAAACGTACAGGCGCTGCCAAAGGCTCGCGTCACAACAAAAAGTATTGGAGAAAGGGAACGGACATTACCGATATTGAGGATGCGATTCGTGAGTGGAATTTGCGGAAAAAGCGCGAAAATTGAGCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGATTTTCTCAATATTAGGTGA</pcr_primer_p1>
		<pcr_primer_p2>AAATTATCTCCTGGCCATTC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTT</canonical_amplicon>
		<polymorphic_amplicon>ACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCWACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37469</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>11794</contig_pos>
        <strand>+</strand>
        <context>ATTTTCAGAC[G/T]CTATTTTCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGAC</left_flank>
        <right_flank>CTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTTCTTTTTGCGATTTTTGATTTTTCCCTTATTTTCTGTTCGTCGTAGATTTTTCCCCCGTTTTTTCTAGCTTTCTTCCCTATAAAATCGTTATTTTATCGCTTTTTTTCGAAATTTTTCTCGGTTTCCAGCCGATTTTCTATCTATTTTTTGTGATTTTTCTTCCTTTTTCTTTGAAATTGGAGCCTAATTTCCATTCAGATGGCACCTGGGAAACGTACAGGCGCTGCCAAAGGCTCGCGTCACAACAAAAAGTATTGGAGAAAGGGAACGGACATTACCGATATTGAGGATGCGATTCGTGAGTGGAATTTGCGGAAAAAGCGCGAAAATTGAGCTAGAAATTGATGAAAATTGAGTTTTCCAGCCATTTT</canonical>
            <polymorphic>TTTTTCGGTATTTTTTTGAGTCATTTACCACTATTTTCTCAAAATTTCTGATTTTTACCGATTTTTCGCAATTTTCAAGGACTAGATTGGAAAAATAGCTGAAAAAACTGAAAGTTTCGACAAAAATTGACCGAAAAACACCCGAAAAATGAGCGAATTTCCAAGCGGCTGGCGTGCCTTTGGCGCGTTTTGGAATTCCTTGATTAGAAGCGTTTTTGATCTGTTTTAGGGCATTTTGAATCATTTTTAGGCAAAAAGAAGCTTATTTTTGTGATTTTCAGCTCATTCCAGCTGAGGGATTCTGCAAAATTTGGCTTCAAAAATTCAATTTTCATGATTAGCACACTTTTCGGTGGTTTTTGAGTCATTATTCACGATTTTCTCAATATTAGGTGAAATTTACAGCGATTTTTCGAAATTTCGTGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACKCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTTCTTTTTGCGATTTTTGATTTTTCCCTTATTTTCTGTTCGTCGTAGATTTTTCCCCCGTTTTTTCTAGCTTTCTTCCCTATAAAATCGTTATTTTATCGCTTTTTTTCGAAATTTTTCTCGGTTTCCAGCCGATTTTCTATCTATTTTTTGTGATTTTTCTTCCTTTTTCTTTGAAATTGGAGCCTAATTTCCATTCAGATGGCACCTGGGAAACGTACAGGCGCTGCCAAAGGCTCGCGTCACAACAAAAAGTATTGGAGAAAGGGAACGGACATTACCGATATTGAGGATGCGATTCGTGAGTGGAATTTGCGGAAAAAGCGCGAAAATTGAGCTAGAAATTGATGAAAATTGAGTTTTCCAGCCATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCCAAATTTAGCTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAACAGAAAATAAGGGAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACGCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTTCTTTTTGCGATTTTTGATTTTTCCCTTATTTTCTGTTC</canonical_amplicon>
		<polymorphic_amplicon>TGCCAAATTTAGCTGAAAAATTCGATTTTCCATGCGTTTTTCTACTGAAAAATCCCGAAAAAATCAATTTTCAGACKCTATTTTCAATATTTTTATAAAATTGCTGAAATTTTTGCAGAGAATGGTATCGCCGAAACCTGCAGCTCATTTGGCCGGCACTCAAAGTCAACGTCGTCAGATTTTTCCGAATGGCCAGGAGATAATTTCTTTTTGCGATTTTTGATTTTTCCCTTATTTTCTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37470</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>13545</contig_pos>
        <strand>+</strand>
        <context>CGGGAGGAAT[C/T]GTGGAGGATA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAATGCTTTCCAGACGATCGTTCTCATCAAGCAGCGACGGGAGGAAT</left_flank>
        <right_flank>GTGGAGGATATGAAGGACGAGGAAATCTTTGTCGTCGATCGTCTACCCAC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAAAATATTCAAGAATCTGTGCAAAAATGACTCAATAGCCACCGAAAAAATGGTAATCATCGAAAAATTATGAAGACTAAGTTGAAATGAGCTGAAAATCTCGAAAATACGGTTATTTTTGCATGAAAATGATCAAAAAGCGTCCAAAATCATGAAAAAACCCCCATTTGAAGTGCTCTAAAATAGTCTAAGAAGTATCAAATCGAGGAATTTCGAAACGCGCCAAAGGCACGCCAGCCGAATTCGCTCAATTTTTGGACGTTCGATTTTTGTCAAAAATTTCTGGATTTTGCTCTTGAAAAGTGTAAAAAATGGCTTTAAAAAGACCAAAAAACGCCCGGAAAATGAGCAATTTTCGAGTGGCTGGTGCGCCTTTGGCGCGCAATTCTAGAAAAAAAACCGGAAAATTTTCGGGAAAATTCTAGTAAAATCTCAAAAAAAAAAATGCAAAAAATGCTTTCCAGACGATCGTTCTCATCAAGCAGCGACGGGAGGAATTGTGGAGGATATGAAGGACGAGGAAATCTTTGTCGTCGATCGTCTACCCACCTCCAAGAAGACGGAAGAACCCCAAAGAACGCGAAAACAGCAGGCGGCTCTGGAGAAAATCACGAGAAACATCACTCAAGAGCAAGTTTCCCTGCCGAAACCCACCGGAAAAGTGCTCAAAAAGCCGGCGAAACTGCCACGTGGCAATGCGATTCTGAAGTTGAAGGCTGGGGTGAAGAAAGTGGCTAAACGGCAGGAGAAGGAGCCGAAATTCGACGTCTGGAGTACAGATTTGACGCCGCGGATTCCAAAAGAGAAGCTGGATAATCCGGAAGCGGTGGAGCACTTTTTGAAGGTATTAAATCTAAAAATTGCGCAAAATCATGAAAATCCAATTTCAAATGCTCTAAAATGACCGAAAAACGCTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCGCGCCAGACTATACAATTTTGCAATTTTCGGGCGTTTTTTGGTCTTTTTA</canonical>
            <polymorphic>CTAAAATATTCAAGAATCTGTGCAAAAATGACTCAATAGCCACCGAAAAAATGGTAATCATCGAAAAATTATGAAGACTAAGTTGAAATGAGCTGAAAATCTCGAAAATACGGTTATTTTTGCATGAAAATGATCAAAAAGCGTCCAAAATCATGAAAAAACCCCCATTTGAAGTGCTCTAAAATAGTCTAAGAAGTATCAAATCGAGGAATTTCGAAACGCGCCAAAGGCACGCCAGCCGAATTCGCTCAATTTTTGGACGTTCGATTTTTGTCAAAAATTTCTGGATTTTGCTCTTGAAAAGTGTAAAAAATGGCTTTAAAAAGACCAAAAAACGCCCGGAAAATGAGCAATTTTCGAGTGGCTGGTGCGCCTTTGGCGCGCAATTCTAGAAAAAAAACCGGAAAATTTTCGGGAAAATTCTAGTAAAATCTCAAAAAAAAAAATGCAAAAAATGCTTTCCAGACGATCGTTCTCATCAAGCAGCGACGGGAGGAATYGTGGAGGATATGAAGGACGAGGAAATCTTTGTCGTCGATCGTCTACCCACCTCCAAGAAGACGGAAGAACCCCAAAGAACGCGAAAACAGCAGGCGGCTCTGGAGAAAATCACGAGAAACATCACTCAAGAGCAAGTTTCCCTGCCGAAACCCACCGGAAAAGTGCTCAAAAAGCCGGCGAAACTGCCACGTGGCAATGCGATTCTGAAGTTGAAGGCTGGGGTGAAGAAAGTGGCTAAACGGCAGGAGAAGGAGCCGAAATTCGACGTCTGGAGTACAGATTTGACGCCGCGGATTCCAAAAGAGAAGCTGGATAATCCGGAAGCGGTGGAGCACTTTTTGAAGGTATTAAATCTAAAAATTGCGCAAAATCATGAAAATCCAATTTCAAATGCTCTAAAATGACCGAAAAACGCTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCGCGCCAGACTATACAATTTTGCAATTTTCGGGCGTTTTTTGGTCTTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>263 143 100 78 73 66 45 36 33 32 28 28 24 22 12 9 8</canonical_bands>
                <polymorphic_bands>341 143 100 73 66 45 36 33 32 28 28 24 22 12 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATGAGCAATTTTCGAGTG</pcr_primer_p1>
		<pcr_primer_p2>ATGTTTCTCGTGATTTTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>279</pcr_amplicon_size>
		<canonical_amplicon>AAATGAGCAATTTTCGAGTGGCTGGTGCGCCTTTGGCGCGCAATTCTAGAAAAAAAACCGGAAAATTTTCGGGAAAATTCTAGTAAAATCTCAAAAAAAAAAATGCAAAAAATGCTTTCCAGACGATCGTTCTCATCAAGCAGCGACGGGAGGAATTGTGGAGGATATGAAGGACGAGGAAATCTTTGTCGTCGATCGTCTACCCACCTCCAAGAAGACGGAAGAACCCCAAAGAACGCGAAAACAGCAGGCGGCTCTGGAGAAAATCACGAGAAACAT</canonical_amplicon>
		<polymorphic_amplicon>AAATGAGCAATTTTCGAGTGGCTGGTGCGCCTTTGGCGCGCAATTCTAGAAAAAAAACCGGAAAATTTTCGGGAAAATTCTAGTAAAATCTCAAAAAAAAAAATGCAAAAAATGCTTTCCAGACGATCGTTCTCATCAAGCAGCGACGGGAGGAATYGTGGAGGATATGAAGGACGAGGAAATCTTTGTCGTCGATCGTCTACCCACCTCCAAGAAGACGGAAGAACCCCAAAGAACGCGAAAACAGCAGGCGGCTCTGGAGAAAATCACGAGAAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37471</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>13575</contig_pos>
        <strand>+</strand>
        <context>AGGAAATCTT[C/T]GTCGTCGATC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAGCAGCGACGGGAGGAATTGTGGAGGATATGAAGGACGAGGAAATCTT</left_flank>
        <right_flank>GTCGTCGATCGTCTACCCACCTCCAAGAAGACGGAAGAACCCCAAAGAAC</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCAATAGCCACCGAAAAAATGGTAATCATCGAAAAATTATGAAGACTAAGTTGAAATGAGCTGAAAATCTCGAAAATACGGTTATTTTTGCATGAAAATGATCAAAAAGCGTCCAAAATCATGAAAAAACCCCCATTTGAAGTGCTCTAAAATAGTCTAAGAAGTATCAAATCGAGGAATTTCGAAACGCGCCAAAGGCACGCCAGCCGAATTCGCTCAATTTTTGGACGTTCGATTTTTGTCAAAAATTTCTGGATTTTGCTCTTGAAAAGTGTAAAAAATGGCTTTAAAAAGACCAAAAAACGCCCGGAAAATGAGCAATTTTCGAGTGGCTGGTGCGCCTTTGGCGCGCAATTCTAGAAAAAAAACCGGAAAATTTTCGGGAAAATTCTAGTAAAATCTCAAAAAAAAAAATGCAAAAAATGCTTTCCAGACGATCGTTCTCATCAAGCAGCGACGGGAGGAATTGTGGAGGATATGAAGGACGAGGAAATCTTTGTCGTCGATCGTCTACCCACCTCCAAGAAGACGGAAGAACCCCAAAGAACGCGAAAACAGCAGGCGGCTCTGGAGAAAATCACGAGAAACATCACTCAAGAGCAAGTTTCCCTGCCGAAACCCACCGGAAAAGTGCTCAAAAAGCCGGCGAAACTGCCACGTGGCAATGCGATTCTGAAGTTGAAGGCTGGGGTGAAGAAAGTGGCTAAACGGCAGGAGAAGGAGCCGAAATTCGACGTCTGGAGTACAGATTTGACGCCGCGGATTCCAAAAGAGAAGCTGGATAATCCGGAAGCGGTGGAGCACTTTTTGAAGGTATTAAATCTAAAAATTGCGCAAAATCATGAAAATCCAATTTCAAATGCTCTAAAATGACCGAAAAACGCTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCGCGCCAGACTATACAATTTTGCAATTTTCGGGCGTTTTTTGGTCTTTTTAAATGCATTTTTCACACTTTTCAAGATCAAA</canonical>
            <polymorphic>ACTCAATAGCCACCGAAAAAATGGTAATCATCGAAAAATTATGAAGACTAAGTTGAAATGAGCTGAAAATCTCGAAAATACGGTTATTTTTGCATGAAAATGATCAAAAAGCGTCCAAAATCATGAAAAAACCCCCATTTGAAGTGCTCTAAAATAGTCTAAGAAGTATCAAATCGAGGAATTTCGAAACGCGCCAAAGGCACGCCAGCCGAATTCGCTCAATTTTTGGACGTTCGATTTTTGTCAAAAATTTCTGGATTTTGCTCTTGAAAAGTGTAAAAAATGGCTTTAAAAAGACCAAAAAACGCCCGGAAAATGAGCAATTTTCGAGTGGCTGGTGCGCCTTTGGCGCGCAATTCTAGAAAAAAAACCGGAAAATTTTCGGGAAAATTCTAGTAAAATCTCAAAAAAAAAAATGCAAAAAATGCTTTCCAGACGATCGTTCTCATCAAGCAGCGACGGGAGGAATTGTGGAGGATATGAAGGACGAGGAAATCTTYGTCGTCGATCGTCTACCCACCTCCAAGAAGACGGAAGAACCCCAAAGAACGCGAAAACAGCAGGCGGCTCTGGAGAAAATCACGAGAAACATCACTCAAGAGCAAGTTTCCCTGCCGAAACCCACCGGAAAAGTGCTCAAAAAGCCGGCGAAACTGCCACGTGGCAATGCGATTCTGAAGTTGAAGGCTGGGGTGAAGAAAGTGGCTAAACGGCAGGAGAAGGAGCCGAAATTCGACGTCTGGAGTACAGATTTGACGCCGCGGATTCCAAAAGAGAAGCTGGATAATCCGGAAGCGGTGGAGCACTTTTTGAAGGTATTAAATCTAAAAATTGCGCAAAATCATGAAAATCCAATTTCAAATGCTCTAAAATGACCGAAAAACGCTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCGCGCCAGACTATACAATTTTGCAATTTTCGGGCGTTTTTTGGTCTTTTTAAATGCATTTTTCACACTTTTCAAGATCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGACGATCGTTCTCATCAAG</pcr_primer_p1>
		<pcr_primer_p2>CAGCCTTCAACTTCAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>AGACGATCGTTCTCATCAAGCAGCGACGGGAGGAATTGTGGAGGATATGAAGGACGAGGAAATCTTTGTCGTCGATCGTCTACCCACCTCCAAGAAGACGGAAGAACCCCAAAGAACGCGAAAACAGCAGGCGGCTCTGGAGAAAATCACGAGAAACATCACTCAAGAGCAAGTTTCCCTGCCGAAACCCACCGGAAAAGTGCTCAAAAAGCCGGCGAAACTGCCACGTGGCAATGCGATTCTGAAGTTGAAGGCTG</canonical_amplicon>
		<polymorphic_amplicon>AGACGATCGTTCTCATCAAGCAGCGACGGGAGGAATTGTGGAGGATATGAAGGACGAGGAAATCTTYGTCGTCGATCGTCTACCCACCTCCAAGAAGACGGAAGAACCCCAAAGAACGCGAAAACAGCAGGCGGCTCTGGAGAAAATCACGAGAAACATCACTCAAGAGCAAGTTTCCCTGCCGAAACCCACCGGAAAAGTGCTCAAAAAGCCGGCGAAACTGCCACGTGGCAATGCGATTCTGAAGTTGAAGGCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37472</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>13635</contig_pos>
        <strand>+</strand>
        <context>CGCGAAAACA[A/G]CAGGCGGCTY</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTCTACCCACCTCCAAGAAGACGGAAGAACCCCAAAGAACGCGAAAACA</left_flank>
        <right_flank>CAGGCGGCTCTGGAGAAAATCACGAGAAACATCACTCAAGAGCAAGTTTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTGAAAATCTCGAAAATACGGTTATTTTTGCATGAAAATGATCAAAAAGCGTCCAAAATCATGAAAAAACCCCCATTTGAAGTGCTCTAAAATAGTCTAAGAAGTATCAAATCGAGGAATTTCGAAACGCGCCAAAGGCACGCCAGCCGAATTCGCTCAATTTTTGGACGTTCGATTTTTGTCAAAAATTTCTGGATTTTGCTCTTGAAAAGTGTAAAAAATGGCTTTAAAAAGACCAAAAAACGCCCGGAAAATGAGCAATTTTCGAGTGGCTGGTGCGCCTTTGGCGCGCAATTCTAGAAAAAAAACCGGAAAATTTTCGGGAAAATTCTAGTAAAATCTCAAAAAAAAAAATGCAAAAAATGCTTTCCAGACGATCGTTCTCATCAAGCAGCGACGGGAGGAATTGTGGAGGATATGAAGGACGAGGAAATCTTTGTCGTCGATCGTCTACCCACCTCCAAGAAGACGGAAGAACCCCAAAGAACGCGAAAACAGCAGGCGGCTCTGGAGAAAATCACGAGAAACATCACTCAAGAGCAAGTTTCCCTGCCGAAACCCACCGGAAAAGTGCTCAAAAAGCCGGCGAAACTGCCACGTGGCAATGCGATTCTGAAGTTGAAGGCTGGGGTGAAGAAAGTGGCTAAACGGCAGGAGAAGGAGCCGAAATTCGACGTCTGGAGTACAGATTTGACGCCGCGGATTCCAAAAGAGAAGCTGGATAATCCGGAAGCGGTGGAGCACTTTTTGAAGGTATTAAATCTAAAAATTGCGCAAAATCATGAAAATCCAATTTCAAATGCTCTAAAATGACCGAAAAACGCTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCGCGCCAGACTATACAATTTTGCAATTTTCGGGCGTTTTTTGGTCTTTTTAAATGCATTTTTCACACTTTTCAAGATCAAAATCTGAAAATTTCGACAAAAATCGACCTAAAAACGCCCGAATAATGAGCAATTCCCAAGA</canonical>
            <polymorphic>AGCTGAAAATCTCGAAAATACGGTTATTTTTGCATGAAAATGATCAAAAAGCGTCCAAAATCATGAAAAAACCCCCATTTGAAGTGCTCTAAAATAGTCTAAGAAGTATCAAATCGAGGAATTTCGAAACGCGCCAAAGGCACGCCAGCCGAATTCGCTCAATTTTTGGACGTTCGATTTTTGTCAAAAATTTCTGGATTTTGCTCTTGAAAAGTGTAAAAAATGGCTTTAAAAAGACCAAAAAACGCCCGGAAAATGAGCAATTTTCGAGTGGCTGGTGCGCCTTTGGCGCGCAATTCTAGAAAAAAAACCGGAAAATTTTCGGGAAAATTCTAGTAAAATCTCAAAAAAAAAAATGCAAAAAATGCTTTCCAGACGATCGTTCTCATCAAGCAGCGACGGGAGGAATTGTGGAGGATATGAAGGACGAGGAAATCTTTGTCGTCGATCGTCTACCCACCTCCAAGAAGACGGAAGAACCCCAAAGAACGCGAAAACARCAGGCGGCTCTGGAGAAAATCACGAGAAACATCACTCAAGAGCAAGTTTCCCTGCCGAAACCCACCGGAAAAGTGCTCAAAAAGCCGGCGAAACTGCCACGTGGCAATGCGATTCTGAAGTTGAAGGCTGGGGTGAAGAAAGTGGCTAAACGGCAGGAGAAGGAGCCGAAATTCGACGTCTGGAGTACAGATTTGACGCCGCGGATTCCAAAAGAGAAGCTGGATAATCCGGAAGCGGTGGAGCACTTTTTGAAGGTATTAAATCTAAAAATTGCGCAAAATCATGAAAATCCAATTTCAAATGCTCTAAAATGACCGAAAAACGCTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCGCGCCAGACTATACAATTTTGCAATTTTCGGGCGTTTTTTGGTCTTTTTAAATGCATTTTTCACACTTTTCAAGATCAAAATCTGAAAATTTCGACAAAAATCGACCTAAAAACGCCCGAATAATGAGCAATTCCCAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>275 211 145 142 139 84 4</canonical_bands>
                <polymorphic_bands>295 275 145 142 139 4</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>275 144 137 133 132 84 78 17</canonical_bands>
                <polymorphic_bands>275 217 144 137 132 78 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACGATCGTTCTCATCAAG</pcr_primer_p1>
		<pcr_primer_p2>CAGCCTTCAACTTCAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>AGACGATCGTTCTCATCAAGCAGCGACGGGAGGAATTGTGGAGGATATGAAGGACGAGGAAATCTTTGTCGTCGATCGTCTACCCACCTCCAAGAAGACGGAAGAACCCCAAAGAACGCGAAAACAGCAGGCGGCTCTGGAGAAAATCACGAGAAACATCACTCAAGAGCAAGTTTCCCTGCCGAAACCCACCGGAAAAGTGCTCAAAAAGCCGGCGAAACTGCCACGTGGCAATGCGATTCTGAAGTTGAAGGCTG</canonical_amplicon>
		<polymorphic_amplicon>AGACGATCGTTCTCATCAAGCAGCGACGGGAGGAATTGTGGAGGATATGAAGGACGAGGAAATCTTTGTCGTCGATCGTCTACCCACCTCCAAGAAGACGGAAGAACCCCAAAGAACGCGAAAACARCAGGCGGCTCTGGAGAAAATCACGAGAAACATCACTCAAGAGCAAGTTTCCCTGCCGAAACCCACCGGAAAAGTGCTCAAAAAGCCGGCGAAACTGCCACGTGGCAATGCGATTCTGAAGTTGAAGGCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37473</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>13645</contig_pos>
        <strand>+</strand>
        <context>RCAGGCGGCT[C/T]TGGAGAAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTCCAAGAAGACGGAAGAACCCCAAAGAACGCGAAAACAGCAGGCGGCT</left_flank>
        <right_flank>TGGAGAAAATCACGAGAAACATCACTCAAGAGCAAGTTTCCCTGCCGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCGAAAATACGGTTATTTTTGCATGAAAATGATCAAAAAGCGTCCAAAATCATGAAAAAACCCCCATTTGAAGTGCTCTAAAATAGTCTAAGAAGTATCAAATCGAGGAATTTCGAAACGCGCCAAAGGCACGCCAGCCGAATTCGCTCAATTTTTGGACGTTCGATTTTTGTCAAAAATTTCTGGATTTTGCTCTTGAAAAGTGTAAAAAATGGCTTTAAAAAGACCAAAAAACGCCCGGAAAATGAGCAATTTTCGAGTGGCTGGTGCGCCTTTGGCGCGCAATTCTAGAAAAAAAACCGGAAAATTTTCGGGAAAATTCTAGTAAAATCTCAAAAAAAAAAATGCAAAAAATGCTTTCCAGACGATCGTTCTCATCAAGCAGCGACGGGAGGAATTGTGGAGGATATGAAGGACGAGGAAATCTTTGTCGTCGATCGTCTACCCACCTCCAAGAAGACGGAAGAACCCCAAAGAACGCGAAAACAGCAGGCGGCTCTGGAGAAAATCACGAGAAACATCACTCAAGAGCAAGTTTCCCTGCCGAAACCCACCGGAAAAGTGCTCAAAAAGCCGGCGAAACTGCCACGTGGCAATGCGATTCTGAAGTTGAAGGCTGGGGTGAAGAAAGTGGCTAAACGGCAGGAGAAGGAGCCGAAATTCGACGTCTGGAGTACAGATTTGACGCCGCGGATTCCAAAAGAGAAGCTGGATAATCCGGAAGCGGTGGAGCACTTTTTGAAGGTATTAAATCTAAAAATTGCGCAAAATCATGAAAATCCAATTTCAAATGCTCTAAAATGACCGAAAAACGCTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCGCGCCAGACTATACAATTTTGCAATTTTCGGGCGTTTTTTGGTCTTTTTAAATGCATTTTTCACACTTTTCAAGATCAAAATCTGAAAATTTCGACAAAAATCGACCTAAAAACGCCCGAATAATGAGCAATTCCCAAGAAACTGGCGTG</canonical>
            <polymorphic>CTCGAAAATACGGTTATTTTTGCATGAAAATGATCAAAAAGCGTCCAAAATCATGAAAAAACCCCCATTTGAAGTGCTCTAAAATAGTCTAAGAAGTATCAAATCGAGGAATTTCGAAACGCGCCAAAGGCACGCCAGCCGAATTCGCTCAATTTTTGGACGTTCGATTTTTGTCAAAAATTTCTGGATTTTGCTCTTGAAAAGTGTAAAAAATGGCTTTAAAAAGACCAAAAAACGCCCGGAAAATGAGCAATTTTCGAGTGGCTGGTGCGCCTTTGGCGCGCAATTCTAGAAAAAAAACCGGAAAATTTTCGGGAAAATTCTAGTAAAATCTCAAAAAAAAAAATGCAAAAAATGCTTTCCAGACGATCGTTCTCATCAAGCAGCGACGGGAGGAATTGTGGAGGATATGAAGGACGAGGAAATCTTTGTCGTCGATCGTCTACCCACCTCCAAGAAGACGGAAGAACCCCAAAGAACGCGAAAACAGCAGGCGGCTYTGGAGAAAATCACGAGAAACATCACTCAAGAGCAAGTTTCCCTGCCGAAACCCACCGGAAAAGTGCTCAAAAAGCCGGCGAAACTGCCACGTGGCAATGCGATTCTGAAGTTGAAGGCTGGGGTGAAGAAAGTGGCTAAACGGCAGGAGAAGGAGCCGAAATTCGACGTCTGGAGTACAGATTTGACGCCGCGGATTCCAAAAGAGAAGCTGGATAATCCGGAAGCGGTGGAGCACTTTTTGAAGGTATTAAATCTAAAAATTGCGCAAAATCATGAAAATCCAATTTCAAATGCTCTAAAATGACCGAAAAACGCTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCGCGCCAGACTATACAATTTTGCAATTTTCGGGCGTTTTTTGGTCTTTTTAAATGCATTTTTCACACTTTTCAAGATCAAAATCTGAAAATTTCGACAAAAATCGACCTAAAAACGCCCGAATAATGAGCAATTCCCAAGAAACTGGCGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>148 143 138 132 93 79 54 52 49 49 24 16 12 11</canonical_bands>
                <polymorphic_bands>149 148 143 132 93 79 54 52 49 49 24 16 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACGATCGTTCTCATCAAG</pcr_primer_p1>
		<pcr_primer_p2>CAGCCTTCAACTTCAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>AGACGATCGTTCTCATCAAGCAGCGACGGGAGGAATTGTGGAGGATATGAAGGACGAGGAAATCTTTGTCGTCGATCGTCTACCCACCTCCAAGAAGACGGAAGAACCCCAAAGAACGCGAAAACAGCAGGCGGCTCTGGAGAAAATCACGAGAAACATCACTCAAGAGCAAGTTTCCCTGCCGAAACCCACCGGAAAAGTGCTCAAAAAGCCGGCGAAACTGCCACGTGGCAATGCGATTCTGAAGTTGAAGGCTG</canonical_amplicon>
		<polymorphic_amplicon>AGACGATCGTTCTCATCAAGCAGCGACGGGAGGAATTGTGGAGGATATGAAGGACGAGGAAATCTTTGTCGTCGATCGTCTACCCACCTCCAAGAAGACGGAAGAACCCCAAAGAACGCGAAAACAGCAGGCGGCTYTGGAGAAAATCACGAGAAACATCACTCAAGAGCAAGTTTCCCTGCCGAAACCCACCGGAAAAGTGCTCAAAAAGCCGGCGAAACTGCCACGTGGCAATGCGATTCTGAAGTTGAAGGCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37474</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>13674</contig_pos>
        <strand>+</strand>
        <context>ACATCACTCA[A/G]GAGCAAGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGCGAAAACAGCAGGCGGCTCTGGAGAAAATCACGAGAAACATCACTCA</left_flank>
        <right_flank>GAGCAAGTTTCCCTGCCGAAACCCACCGGAAAAGTGCTCAAAAAGCCGGC</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGATCAAAAAGCGTCCAAAATCATGAAAAAACCCCCATTTGAAGTGCTCTAAAATAGTCTAAGAAGTATCAAATCGAGGAATTTCGAAACGCGCCAAAGGCACGCCAGCCGAATTCGCTCAATTTTTGGACGTTCGATTTTTGTCAAAAATTTCTGGATTTTGCTCTTGAAAAGTGTAAAAAATGGCTTTAAAAAGACCAAAAAACGCCCGGAAAATGAGCAATTTTCGAGTGGCTGGTGCGCCTTTGGCGCGCAATTCTAGAAAAAAAACCGGAAAATTTTCGGGAAAATTCTAGTAAAATCTCAAAAAAAAAAATGCAAAAAATGCTTTCCAGACGATCGTTCTCATCAAGCAGCGACGGGAGGAATTGTGGAGGATATGAAGGACGAGGAAATCTTTGTCGTCGATCGTCTACCCACCTCCAAGAAGACGGAAGAACCCCAAAGAACGCGAAAACAGCAGGCGGCTCTGGAGAAAATCACGAGAAACATCACTCAAGAGCAAGTTTCCCTGCCGAAACCCACCGGAAAAGTGCTCAAAAAGCCGGCGAAACTGCCACGTGGCAATGCGATTCTGAAGTTGAAGGCTGGGGTGAAGAAAGTGGCTAAACGGCAGGAGAAGGAGCCGAAATTCGACGTCTGGAGTACAGATTTGACGCCGCGGATTCCAAAAGAGAAGCTGGATAATCCGGAAGCGGTGGAGCACTTTTTGAAGGTATTAAATCTAAAAATTGCGCAAAATCATGAAAATCCAATTTCAAATGCTCTAAAATGACCGAAAAACGCTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCGCGCCAGACTATACAATTTTGCAATTTTCGGGCGTTTTTTGGTCTTTTTAAATGCATTTTTCACACTTTTCAAGATCAAAATCTGAAAATTTCGACAAAAATCGACCTAAAAACGCCCGAATAATGAGCAATTCCCAAGAAACTGGCGTGCCTTTGGCGCGTTTTTGAGTTATTTTTTT</canonical>
            <polymorphic>ATGATCAAAAAGCGTCCAAAATCATGAAAAAACCCCCATTTGAAGTGCTCTAAAATAGTCTAAGAAGTATCAAATCGAGGAATTTCGAAACGCGCCAAAGGCACGCCAGCCGAATTCGCTCAATTTTTGGACGTTCGATTTTTGTCAAAAATTTCTGGATTTTGCTCTTGAAAAGTGTAAAAAATGGCTTTAAAAAGACCAAAAAACGCCCGGAAAATGAGCAATTTTCGAGTGGCTGGTGCGCCTTTGGCGCGCAATTCTAGAAAAAAAACCGGAAAATTTTCGGGAAAATTCTAGTAAAATCTCAAAAAAAAAAATGCAAAAAATGCTTTCCAGACGATCGTTCTCATCAAGCAGCGACGGGAGGAATTGTGGAGGATATGAAGGACGAGGAAATCTTTGTCGTCGATCGTCTACCCACCTCCAAGAAGACGGAAGAACCCCAAAGAACGCGAAAACAGCAGGCGGCTCTGGAGAAAATCACGAGAAACATCACTCARGAGCAAGTTTCCCTGCCGAAACCCACCGGAAAAGTGCTCAAAAAGCCGGCGAAACTGCCACGTGGCAATGCGATTCTGAAGTTGAAGGCTGGGGTGAAGAAAGTGGCTAAACGGCAGGAGAAGGAGCCGAAATTCGACGTCTGGAGTACAGATTTGACGCCGCGGATTCCAAAAGAGAAGCTGGATAATCCGGAAGCGGTGGAGCACTTTTTGAAGGTATTAAATCTAAAAATTGCGCAAAATCATGAAAATCCAATTTCAAATGCTCTAAAATGACCGAAAAACGCTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCGCGCCAGACTATACAATTTTGCAATTTTCGGGCGTTTTTTGGTCTTTTTAAATGCATTTTTCACACTTTTCAAGATCAAAATCTGAAAATTTCGACAAAAATCGACCTAAAAACGCCCGAATAATGAGCAATTCCCAAGAAACTGGCGTGCCTTTGGCGCGTTTTTGAGTTATTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACGATCGTTCTCATCAAG</pcr_primer_p1>
		<pcr_primer_p2>CAGCCTTCAACTTCAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>AGACGATCGTTCTCATCAAGCAGCGACGGGAGGAATTGTGGAGGATATGAAGGACGAGGAAATCTTTGTCGTCGATCGTCTACCCACCTCCAAGAAGACGGAAGAACCCCAAAGAACGCGAAAACAGCAGGCGGCTCTGGAGAAAATCACGAGAAACATCACTCAAGAGCAAGTTTCCCTGCCGAAACCCACCGGAAAAGTGCTCAAAAAGCCGGCGAAACTGCCACGTGGCAATGCGATTCTGAAGTTGAAGGCTG</canonical_amplicon>
		<polymorphic_amplicon>AGACGATCGTTCTCATCAAGCAGCGACGGGAGGAATTGTGGAGGATATGAAGGACGAGGAAATCTTTGTCGTCGATCGTCTACCCACCTCCAAGAAGACGGAAGAACCCCAAAGAACGCGAAAACAGCAGGCGGCTCTGGAGAAAATCACGAGAAACATCACTCARGAGCAAGTTTCCCTGCCGAAACCCACCGGAAAAGTGCTCAAAAAGCCGGCGAAACTGCCACGTGGCAATGCGATTCTGAAGTTGAAGGCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37475</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>13781</contig_pos>
        <strand>+</strand>
        <context>AAGAAAGTGG[C/G]TAAACGGCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCCACGTGGCAATGCGATTCTGAAGTTGAAGGCTGGGGTGAAGAAAGTGG</left_flank>
        <right_flank>TAAACGGCAGGAGAAGGAGCCGAAATTCGACGTCTGGAGTACAGATTTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCCGAATTCGCTCAATTTTTGGACGTTCGATTTTTGTCAAAAATTTCTGGATTTTGCTCTTGAAAAGTGTAAAAAATGGCTTTAAAAAGACCAAAAAACGCCCGGAAAATGAGCAATTTTCGAGTGGCTGGTGCGCCTTTGGCGCGCAATTCTAGAAAAAAAACCGGAAAATTTTCGGGAAAATTCTAGTAAAATCTCAAAAAAAAAAATGCAAAAAATGCTTTCCAGACGATCGTTCTCATCAAGCAGCGACGGGAGGAATTGTGGAGGATATGAAGGACGAGGAAATCTTTGTCGTCGATCGTCTACCCACCTCCAAGAAGACGGAAGAACCCCAAAGAACGCGAAAACAGCAGGCGGCTCTGGAGAAAATCACGAGAAACATCACTCAAGAGCAAGTTTCCCTGCCGAAACCCACCGGAAAAGTGCTCAAAAAGCCGGCGAAACTGCCACGTGGCAATGCGATTCTGAAGTTGAAGGCTGGGGTGAAGAAAGTGGCTAAACGGCAGGAGAAGGAGCCGAAATTCGACGTCTGGAGTACAGATTTGACGCCGCGGATTCCAAAAGAGAAGCTGGATAATCCGGAAGCGGTGGAGCACTTTTTGAAGGTATTAAATCTAAAAATTGCGCAAAATCATGAAAATCCAATTTCAAATGCTCTAAAATGACCGAAAAACGCTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCGCGCCAGACTATACAATTTTGCAATTTTCGGGCGTTTTTTGGTCTTTTTAAATGCATTTTTCACACTTTTCAAGATCAAAATCTGAAAATTTCGACAAAAATCGACCTAAAAACGCCCGAATAATGAGCAATTCCCAAGAAACTGGCGTGCCTTTGGCGCGTTTTTGAGTTATTTTTTTTCAAAAATTTGCGAAATTTTCTGAAAAAAATGGCTGAATTTTTTTTTCGAGAATTCTGGACTATATTTTTTAGATTTTTCAAAAATTAGAATTTTTTGGAATTTGAA</canonical>
            <polymorphic>AGCCGAATTCGCTCAATTTTTGGACGTTCGATTTTTGTCAAAAATTTCTGGATTTTGCTCTTGAAAAGTGTAAAAAATGGCTTTAAAAAGACCAAAAAACGCCCGGAAAATGAGCAATTTTCGAGTGGCTGGTGCGCCTTTGGCGCGCAATTCTAGAAAAAAAACCGGAAAATTTTCGGGAAAATTCTAGTAAAATCTCAAAAAAAAAAATGCAAAAAATGCTTTCCAGACGATCGTTCTCATCAAGCAGCGACGGGAGGAATTGTGGAGGATATGAAGGACGAGGAAATCTTTGTCGTCGATCGTCTACCCACCTCCAAGAAGACGGAAGAACCCCAAAGAACGCGAAAACAGCAGGCGGCTCTGGAGAAAATCACGAGAAACATCACTCAAGAGCAAGTTTCCCTGCCGAAACCCACCGGAAAAGTGCTCAAAAAGCCGGCGAAACTGCCACGTGGCAATGCGATTCTGAAGTTGAAGGCTGGGGTGAAGAAAGTGGSTAAACGGCAGGAGAAGGAGCCGAAATTCGACGTCTGGAGTACAGATTTGACGCCGCGGATTCCAAAAGAGAAGCTGGATAATCCGGAAGCGGTGGAGCACTTTTTGAAGGTATTAAATCTAAAAATTGCGCAAAATCATGAAAATCCAATTTCAAATGCTCTAAAATGACCGAAAAACGCTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCGCGCCAGACTATACAATTTTGCAATTTTCGGGCGTTTTTTGGTCTTTTTAAATGCATTTTTCACACTTTTCAAGATCAAAATCTGAAAATTTCGACAAAAATCGACCTAAAAACGCCCGAATAATGAGCAATTCCCAAGAAACTGGCGTGCCTTTGGCGCGTTTTTGAGTTATTTTTTTTCAAAAATTTGCGAAATTTTCTGAAAAAAATGGCTGAATTTTTTTTTCGAGAATTCTGGACTATATTTTTTAGATTTTTCAAAAATTAGAATTTTTTGGAATTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>353 233 78 77 74 54 48 43 20 18 2</canonical_bands>
                <polymorphic_bands>353 233 78 77 74 54 48 43 38 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATCACGAGAAACATCACTC</pcr_primer_p1>
		<pcr_primer_p2>GATTTAATACCTTCAAAAAGTGCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATCACGAGAAACATCACTCAAGAGCAAGTTTCCCTGCCGAAACCCACCGGAAAAGTGCTCAAAAAGCCGGCGAAACTGCCACGTGGCAATGCGATTCTGAAGTTGAAGGCTGGGGTGAAGAAAGTGGCTAAACGGCAGGAGAAGGAGCCGAAATTCGACGTCTGGAGTACAGATTTGACGCCGCGGATTCCAAAAGAGAAGCTGGATAATCCGGAAGCGGTGGAGCACTTTTTGAAGGTATTAAATC</canonical_amplicon>
		<polymorphic_amplicon>AAAATCACGAGAAACATCACTCAAGAGCAAGTTTCCCTGCCGAAACCCACCGGAAAAGTGCTCAAAAAGCCGGCGAAACTGCCACGTGGCAATGCGATTCTGAAGTTGAAGGCTGGGGTGAAGAAAGTGGSTAAACGGCAGGAGAAGGAGCCGAAATTCGACGTCTGGAGTACAGATTTGACGCCGCGGATTCCAAAAGAGAAGCTGGATAATCCGGAAGCGGTGGAGCACTTTTTGAAGGTATTAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37476</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>13908</contig_pos>
        <strand>+</strand>
        <context>ATCTAAAAAT[G/T]GYSCAAAATC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATAATCCGGAAGCGGTGGAGCACTTTTTGAAGGTATTAAATCTAAAAAT</left_flank>
        <right_flank>GCGCAAAATCATGAAAATCCAATTTCAAATGCTCTAAAATGACCGAAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTGGTGCGCCTTTGGCGCGCAATTCTAGAAAAAAAACCGGAAAATTTTCGGGAAAATTCTAGTAAAATCTCAAAAAAAAAAATGCAAAAAATGCTTTCCAGACGATCGTTCTCATCAAGCAGCGACGGGAGGAATTGTGGAGGATATGAAGGACGAGGAAATCTTTGTCGTCGATCGTCTACCCACCTCCAAGAAGACGGAAGAACCCCAAAGAACGCGAAAACAGCAGGCGGCTCTGGAGAAAATCACGAGAAACATCACTCAAGAGCAAGTTTCCCTGCCGAAACCCACCGGAAAAGTGCTCAAAAAGCCGGCGAAACTGCCACGTGGCAATGCGATTCTGAAGTTGAAGGCTGGGGTGAAGAAAGTGGCTAAACGGCAGGAGAAGGAGCCGAAATTCGACGTCTGGAGTACAGATTTGACGCCGCGGATTCCAAAAGAGAAGCTGGATAATCCGGAAGCGGTGGAGCACTTTTTGAAGGTATTAAATCTAAAAATTGCGCAAAATCATGAAAATCCAATTTCAAATGCTCTAAAATGACCGAAAAACGCTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCGCGCCAGACTATACAATTTTGCAATTTTCGGGCGTTTTTTGGTCTTTTTAAATGCATTTTTCACACTTTTCAAGATCAAAATCTGAAAATTTCGACAAAAATCGACCTAAAAACGCCCGAATAATGAGCAATTCCCAAGAAACTGGCGTGCCTTTGGCGCGTTTTTGAGTTATTTTTTTTCAAAAATTTGCGAAATTTTCTGAAAAAAATGGCTGAATTTTTTTTTCGAGAATTCTGGACTATATTTTTTAGATTTTTCAAAAATTAGAATTTTTTGGAATTTGAAAATTCCGGAAATTCCAAATTACCCAATTTTTTGAAATCCTGGATTTTTGGGATTTTTTGAAAGGGGGACTCCGACCAATAATTTTTATTGCATTAAAATGTGTTAAAAGTTATATATTTTCCGAATA</canonical>
            <polymorphic>GCTGGTGCGCCTTTGGCGCGCAATTCTAGAAAAAAAACCGGAAAATTTTCGGGAAAATTCTAGTAAAATCTCAAAAAAAAAAATGCAAAAAATGCTTTCCAGACGATCGTTCTCATCAAGCAGCGACGGGAGGAATTGTGGAGGATATGAAGGACGAGGAAATCTTTGTCGTCGATCGTCTACCCACCTCCAAGAAGACGGAAGAACCCCAAAGAACGCGAAAACAGCAGGCGGCTCTGGAGAAAATCACGAGAAACATCACTCAAGAGCAAGTTTCCCTGCCGAAACCCACCGGAAAAGTGCTCAAAAAGCCGGCGAAACTGCCACGTGGCAATGCGATTCTGAAGTTGAAGGCTGGGGTGAAGAAAGTGGCTAAACGGCAGGAGAAGGAGCCGAAATTCGACGTCTGGAGTACAGATTTGACGCCGCGGATTCCAAAAGAGAAGCTGGATAATCCGGAAGCGGTGGAGCACTTTTTGAAGGTATTAAATCTAAAAATKGCGCAAAATCATGAAAATCCAATTTCAAATGCTCTAAAATGACCGAAAAACGCTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCGCGCCAGACTATACAATTTTGCAATTTTCGGGCGTTTTTTGGTCTTTTTAAATGCATTTTTCACACTTTTCAAGATCAAAATCTGAAAATTTCGACAAAAATCGACCTAAAAACGCCCGAATAATGAGCAATTCCCAAGAAACTGGCGTGCCTTTGGCGCGTTTTTGAGTTATTTTTTTTCAAAAATTTGCGAAATTTTCTGAAAAAAATGGCTGAATTTTTTTTTCGAGAATTCTGGACTATATTTTTTAGATTTTTCAAAAATTAGAATTTTTTGGAATTTGAAAATTCCGGAAATTCCAAATTACCCAATTTTTTGAAATCCTGGATTTTTGGGATTTTTTGAAAGGGGGACTCCGACCAATAATTTTTATTGCATTAAAATGTGTTAAAAGTTATATATTTTCCGAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCGCA</site>
                <isoschizomers>
                    <enzyme>Acc16I</enzyme>
                    <enzyme>AviII</enzyme>
                    <enzyme>FspI</enzyme>
                    <enzyme>MstI</enzyme>
                    <enzyme>NsbI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>263 100 78 65 55 55 48 45 42 36 32 24 22 22 21 15 12 10 9 9 8 8 8 7 6</canonical_bands>
                <polymorphic_bands>263 124 78 65 55 55 48 45 42 36 32 22 22 21 15 12 10 9 9 8 8 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAAAGAGAAGCTGGATAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTCAGATTTTGATCTTGAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CCAAAAGAGAAGCTGGATAATCCGGAAGCGGTGGAGCACTTTTTGAAGGTATTAAATCTAAAAATTGCGCAAAATCATGAAAATCCAATTTCAAATGCTCTAAAATGACCGAAAAACGCTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCGCGCCAGACTATACAATTTTGCAATTTTCGGGCGTTTTTTGGTCTTTTTAAATGCATTTTTCACACTTTTCAAGATCAAAATCTGAAA</canonical_amplicon>
		<polymorphic_amplicon>CCAAAAGAGAAGCTGGATAATCCGGAAGCGGTGGAGCACTTTTTGAAGGTATTAAATCTAAAAATKGCGCAAAATCATGAAAATCCAATTTCAAATGCTCTAAAATGACCGAAAAACGCTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCGCGCCAGACTATACAATTTTGCAATTTTCGGGCGTTTTTTGGTCTTTTTAAATGCATTTTTCACACTTTTCAAGATCAAAATCTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37477</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>13910</contig_pos>
        <strand>+</strand>
        <context>CTAAAAATKG[C/T]SCAAAATCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATCCGGAAGCGGTGGAGCACTTTTTGAAGGTATTAAATCTAAAAATTG</left_flank>
        <right_flank>GCAAAATCATGAAAATCCAATTTCAAATGCTCTAAAATGACCGAAAAACG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTGCGCCTTTGGCGCGCAATTCTAGAAAAAAAACCGGAAAATTTTCGGGAAAATTCTAGTAAAATCTCAAAAAAAAAAATGCAAAAAATGCTTTCCAGACGATCGTTCTCATCAAGCAGCGACGGGAGGAATTGTGGAGGATATGAAGGACGAGGAAATCTTTGTCGTCGATCGTCTACCCACCTCCAAGAAGACGGAAGAACCCCAAAGAACGCGAAAACAGCAGGCGGCTCTGGAGAAAATCACGAGAAACATCACTCAAGAGCAAGTTTCCCTGCCGAAACCCACCGGAAAAGTGCTCAAAAAGCCGGCGAAACTGCCACGTGGCAATGCGATTCTGAAGTTGAAGGCTGGGGTGAAGAAAGTGGCTAAACGGCAGGAGAAGGAGCCGAAATTCGACGTCTGGAGTACAGATTTGACGCCGCGGATTCCAAAAGAGAAGCTGGATAATCCGGAAGCGGTGGAGCACTTTTTGAAGGTATTAAATCTAAAAATTGCGCAAAATCATGAAAATCCAATTTCAAATGCTCTAAAATGACCGAAAAACGCTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCGCGCCAGACTATACAATTTTGCAATTTTCGGGCGTTTTTTGGTCTTTTTAAATGCATTTTTCACACTTTTCAAGATCAAAATCTGAAAATTTCGACAAAAATCGACCTAAAAACGCCCGAATAATGAGCAATTCCCAAGAAACTGGCGTGCCTTTGGCGCGTTTTTGAGTTATTTTTTTTCAAAAATTTGCGAAATTTTCTGAAAAAAATGGCTGAATTTTTTTTTCGAGAATTCTGGACTATATTTTTTAGATTTTTCAAAAATTAGAATTTTTTGGAATTTGAAAATTCCGGAAATTCCAAATTACCCAATTTTTTGAAATCCTGGATTTTTGGGATTTTTTGAAAGGGGGACTCCGACCAATAATTTTTATTGCATTAAAATGTGTTAAAAGTTATATATTTTCCGAATATT</canonical>
            <polymorphic>TGGTGCGCCTTTGGCGCGCAATTCTAGAAAAAAAACCGGAAAATTTTCGGGAAAATTCTAGTAAAATCTCAAAAAAAAAAATGCAAAAAATGCTTTCCAGACGATCGTTCTCATCAAGCAGCGACGGGAGGAATTGTGGAGGATATGAAGGACGAGGAAATCTTTGTCGTCGATCGTCTACCCACCTCCAAGAAGACGGAAGAACCCCAAAGAACGCGAAAACAGCAGGCGGCTCTGGAGAAAATCACGAGAAACATCACTCAAGAGCAAGTTTCCCTGCCGAAACCCACCGGAAAAGTGCTCAAAAAGCCGGCGAAACTGCCACGTGGCAATGCGATTCTGAAGTTGAAGGCTGGGGTGAAGAAAGTGGCTAAACGGCAGGAGAAGGAGCCGAAATTCGACGTCTGGAGTACAGATTTGACGCCGCGGATTCCAAAAGAGAAGCTGGATAATCCGGAAGCGGTGGAGCACTTTTTGAAGGTATTAAATCTAAAAATTGYGCAAAATCATGAAAATCCAATTTCAAATGCTCTAAAATGACCGAAAAACGCTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCGCGCCAGACTATACAATTTTGCAATTTTCGGGCGTTTTTTGGTCTTTTTAAATGCATTTTTCACACTTTTCAAGATCAAAATCTGAAAATTTCGACAAAAATCGACCTAAAAACGCCCGAATAATGAGCAATTCCCAAGAAACTGGCGTGCCTTTGGCGCGTTTTTGAGTTATTTTTTTTCAAAAATTTGCGAAATTTTCTGAAAAAAATGGCTGAATTTTTTTTTCGAGAATTCTGGACTATATTTTTTAGATTTTTCAAAAATTAGAATTTTTTGGAATTTGAAAATTCCGGAAATTCCAAATTACCCAATTTTTTGAAATCCTGGATTTTTGGGATTTTTTGAAAGGGGGACTCCGACCAATAATTTTTATTGCATTAAAATGTGTTAAAAGTTATATATTTTCCGAATATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCGCA</site>
                <isoschizomers>
                    <enzyme>Acc16I</enzyme>
                    <enzyme>AviII</enzyme>
                    <enzyme>FspI</enzyme>
                    <enzyme>MstI</enzyme>
                    <enzyme>NsbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>483 256 156 76 9 9 7 2 2</canonical_bands>
                <polymorphic_bands>559 256 156 9 9 7 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAAAGAGAAGCTGGATAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTCAGATTTTGATCTTGAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CCAAAAGAGAAGCTGGATAATCCGGAAGCGGTGGAGCACTTTTTGAAGGTATTAAATCTAAAAATTGCGCAAAATCATGAAAATCCAATTTCAAATGCTCTAAAATGACCGAAAAACGCTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCGCGCCAGACTATACAATTTTGCAATTTTCGGGCGTTTTTTGGTCTTTTTAAATGCATTTTTCACACTTTTCAAGATCAAAATCTGAAA</canonical_amplicon>
		<polymorphic_amplicon>CCAAAAGAGAAGCTGGATAATCCGGAAGCGGTGGAGCACTTTTTGAAGGTATTAAATCTAAAAATTGYGCAAAATCATGAAAATCCAATTTCAAATGCTCTAAAATGACCGAAAAACGCTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCGCGCCAGACTATACAATTTTGCAATTTTCGGGCGTTTTTTGGTCTTTTTAAATGCATTTTTCACACTTTTCAAGATCAAAATCTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37478</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>13911</contig_pos>
        <strand>+</strand>
        <context>TAAAAATKGY[C/G]CAAAATCATG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATCCGGAAGCGGTGGAGCACTTTTTGAAGGTATTAAATCTAAAAATTGC</left_flank>
        <right_flank>CAAAATCATGAAAATCCAATTTCAAATGCTCTAAAATGACCGAAAAACGC</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTGCGCCTTTGGCGCGCAATTCTAGAAAAAAAACCGGAAAATTTTCGGGAAAATTCTAGTAAAATCTCAAAAAAAAAAATGCAAAAAATGCTTTCCAGACGATCGTTCTCATCAAGCAGCGACGGGAGGAATTGTGGAGGATATGAAGGACGAGGAAATCTTTGTCGTCGATCGTCTACCCACCTCCAAGAAGACGGAAGAACCCCAAAGAACGCGAAAACAGCAGGCGGCTCTGGAGAAAATCACGAGAAACATCACTCAAGAGCAAGTTTCCCTGCCGAAACCCACCGGAAAAGTGCTCAAAAAGCCGGCGAAACTGCCACGTGGCAATGCGATTCTGAAGTTGAAGGCTGGGGTGAAGAAAGTGGCTAAACGGCAGGAGAAGGAGCCGAAATTCGACGTCTGGAGTACAGATTTGACGCCGCGGATTCCAAAAGAGAAGCTGGATAATCCGGAAGCGGTGGAGCACTTTTTGAAGGTATTAAATCTAAAAATTGCGCAAAATCATGAAAATCCAATTTCAAATGCTCTAAAATGACCGAAAAACGCTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCGCGCCAGACTATACAATTTTGCAATTTTCGGGCGTTTTTTGGTCTTTTTAAATGCATTTTTCACACTTTTCAAGATCAAAATCTGAAAATTTCGACAAAAATCGACCTAAAAACGCCCGAATAATGAGCAATTCCCAAGAAACTGGCGTGCCTTTGGCGCGTTTTTGAGTTATTTTTTTTCAAAAATTTGCGAAATTTTCTGAAAAAAATGGCTGAATTTTTTTTTCGAGAATTCTGGACTATATTTTTTAGATTTTTCAAAAATTAGAATTTTTTGGAATTTGAAAATTCCGGAAATTCCAAATTACCCAATTTTTTGAAATCCTGGATTTTTGGGATTTTTTGAAAGGGGGACTCCGACCAATAATTTTTATTGCATTAAAATGTGTTAAAAGTTATATATTTTCCGAATATTA</canonical>
            <polymorphic>GGTGCGCCTTTGGCGCGCAATTCTAGAAAAAAAACCGGAAAATTTTCGGGAAAATTCTAGTAAAATCTCAAAAAAAAAAATGCAAAAAATGCTTTCCAGACGATCGTTCTCATCAAGCAGCGACGGGAGGAATTGTGGAGGATATGAAGGACGAGGAAATCTTTGTCGTCGATCGTCTACCCACCTCCAAGAAGACGGAAGAACCCCAAAGAACGCGAAAACAGCAGGCGGCTCTGGAGAAAATCACGAGAAACATCACTCAAGAGCAAGTTTCCCTGCCGAAACCCACCGGAAAAGTGCTCAAAAAGCCGGCGAAACTGCCACGTGGCAATGCGATTCTGAAGTTGAAGGCTGGGGTGAAGAAAGTGGCTAAACGGCAGGAGAAGGAGCCGAAATTCGACGTCTGGAGTACAGATTTGACGCCGCGGATTCCAAAAGAGAAGCTGGATAATCCGGAAGCGGTGGAGCACTTTTTGAAGGTATTAAATCTAAAAATTGCSCAAAATCATGAAAATCCAATTTCAAATGCTCTAAAATGACCGAAAAACGCTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCGCGCCAGACTATACAATTTTGCAATTTTCGGGCGTTTTTTGGTCTTTTTAAATGCATTTTTCACACTTTTCAAGATCAAAATCTGAAAATTTCGACAAAAATCGACCTAAAAACGCCCGAATAATGAGCAATTCCCAAGAAACTGGCGTGCCTTTGGCGCGTTTTTGAGTTATTTTTTTTCAAAAATTTGCGAAATTTTCTGAAAAAAATGGCTGAATTTTTTTTTCGAGAATTCTGGACTATATTTTTTAGATTTTTCAAAAATTAGAATTTTTTGGAATTTGAAAATTCCGGAAATTCCAAATTACCCAATTTTTTGAAATCCTGGATTTTTGGGATTTTTTGAAAGGGGGACTCCGACCAATAATTTTTATTGCATTAAAATGTGTTAAAAGTTATATATTTTCCGAATATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCGCA</site>
                <isoschizomers>
                    <enzyme>Acc16I</enzyme>
                    <enzyme>AviII</enzyme>
                    <enzyme>FspI</enzyme>
                    <enzyme>MstI</enzyme>
                    <enzyme>NsbI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>483 257 156 76 9 9 6 2 2</canonical_bands>
                <polymorphic_bands>559 257 156 9 9 6 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAAAGAGAAGCTGGATAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTCAGATTTTGATCTTGAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CCAAAAGAGAAGCTGGATAATCCGGAAGCGGTGGAGCACTTTTTGAAGGTATTAAATCTAAAAATTGCGCAAAATCATGAAAATCCAATTTCAAATGCTCTAAAATGACCGAAAAACGCTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCGCGCCAGACTATACAATTTTGCAATTTTCGGGCGTTTTTTGGTCTTTTTAAATGCATTTTTCACACTTTTCAAGATCAAAATCTGAAA</canonical_amplicon>
		<polymorphic_amplicon>CCAAAAGAGAAGCTGGATAATCCGGAAGCGGTGGAGCACTTTTTGAAGGTATTAAATCTAAAAATTGCSCAAAATCATGAAAATCCAATTTCAAATGCTCTAAAATGACCGAAAAACGCTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCGCGCCAGACTATACAATTTTGCAATTTTCGGGCGTTTTTTGGTCTTTTTAAATGCATTTTTCACACTTTTCAAGATCAAAATCTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37479</snp_id>
        <super_contig>c012300905.Contig1</super_contig>
        <contig_pos>34839</contig_pos>
        <strand></strand>
        <context>ttacacctgc[G/T]aagcagtagc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATGGGATTTGGTACTGCTTAGCAGTAGCAAAATTCAATTTTACACCTGC</left_flank>
        <right_flank>AAGCAGTAGCAAAACGAGAATTTGCTGCTTCGCAGTAGCAAAATCTCAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATAATCGGATTTTACACCTGCTAATTTCTCCAATCAGCAAAAATACTGAATTTTGTCTCTAAAATTGCTGGAAATACCGAATTTTGGCGCCTTAAAACATTAAAAAATACTCATATTCGGCTGTAAAAATGTCAAAAATACGGTTTTTTGTCTCGAGAAATTTTAAAAATACAGACCTTTTGGCTCAAAAATTGACCAAAAATAATCAAAACTCGCTGAAAAATACATAAATATTGGCTCAGTGTTTCTTCAGTGTAAATCTCGAAAATCGTCAAAAACAAAGTGAAAATGTTCCGAAAATATGCTTAATTCTAAAAAAGTCCAGAAAAAAACGACGAAAATTGACCGAAAACTGCAATTTTGGTGCTGCTCAGCAGTAGCAAAATGGGATTTGGTACTGCTAAGCAGTAGCAAAATCCGAATTTACTACTGCTAAGCAGTAGCAAAAATGGGATTTGGTACTGCTTAGCAGTAGCAAAATTCAATTTTACACCTGCGAAGCAGTAGCAAAACGAGAATTTGCTGCTTCGCAGTAGCAAAATCTCAATTAGCAGTACCAAAATCGCTTGTTTTCCAGATCTACACAGGCTACAAAGGTGCCACACGTCTTCCATTCGCCATCATCACTTACTCATGGTCCGACGGTCGTCCATGGATCTTCGTACCGCCTCTAGATCCAAAACCGGTGCATCGAAAGCCGAATTGGGAGAAAAAGTCTTATGTAAGGCTGAAAATTCGGCCTTTTTTAACCATTTCCCCTCTAAATTCCGAAATTTCAGGAAAAAGTGAACATGACGAGTATGCCTCAGATGGTGTCCGCGTTCTACGAAGGCTTCAACATCTATTCCCATTGTATTGTCAGTTTCGACGAGGCCGCTGCGATTATGCTGGGTGCCACGTTGGTGGATGCAAACAAGTTTGTGTGGTTTTTGTAGTCTTTGTAGTCAAGTCTGAAACTTTCCAGACTATGCTCATCGGTCCCCCTTGGCTATAGACAG</canonical>
            <polymorphic>AAATAATCGGATTTTACACCTGCTAATTTCTCCAATCAGCAAAAATACTGAATTTTGTCTCTAAAATTGCTGGAAATACCGAATTTTGGCGCCTTAAAACATTAAAAAATACTCATATTCGGCTGTAAAAATGTCAAAAATACGGTTTTTTGTCTCGAGAAATTTTAAAAATACAGACCTTTTGGCTCAAAAATTGACCAAAAATAATCAAAACTCGCTGAAAAATACATAAATATTGGCTCAGTGTTTCTTCAGTGTAAATCTCGAAAATCGTCAAAAACAAAGTGAAAATGTTCCGAAAATATGCTTAATTCTAAAAAAGTCCAGAAAAAAACGACGAAAATTGACCGAAAACTGCAATTTTGGTGCTGCTCAGCAGTAGCAAAATGGGATTTGGTACTGCTAAGCAGTAGCAAAATCCGAATTTACTACTGCTAAGCAGTAGCAAAAATGGGATTTGGTACTGCTTAGCAGTAGCAAAATTCAATTTTACACCTGCKAAGCAGTAGCAAAACGAGAATTTGCTGCTTCGCAGTAGCAAAATCTCAATTAGCAGTACCAAAATCGCTTGTTTTCCAGATCTACACAGGCTACAAAGGTGCCACACGTCTTCCATTCGCCATCATCACTTACTCATGGTCCGACGGTCGTCCATGGATCTTCGTACCGCCTCTAGATCCAAAACCGGTGCATCGAAAGCCGAATTGGGAGAAAAAGTCTTATGTAAGGCTGAAAATTCGGCCTTTTTTAACCATTTCCCCTCTAAATTCCGAAATTTCAGGAAAAAGTGAACATGACGAGTATGCCTCAGATGGTGTCCGCGTTCTACGAAGGCTTCAACATCTATTCCCATTGTATTGTCAGTTTCGACGAGGCCGCTGCGATTATGCTGGGTGCCACGTTGGTGGATGCAAACAAGTTTGTGTGGTTTTTGTAGTCTTTGTAGTCAAGTCTGAAACTTTCCAGACTATGCTCATCGGTCCCCCTTGGCTATAGACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGAAAATATGCTTAATTCTAAA</pcr_primer_p1>
		<pcr_primer_p2>CGATTTTGGTACTGCTAATTG</pcr_primer_p2>
		<pcr_amplicon_size>272</pcr_amplicon_size>
		<canonical_amplicon>CCGAAAATATGCTTAATTCTAAAAAAGTCCAGAAAAAAACGACGAAAATTGACCGAAAACTGCAATTTTGGTGCTGCTCAGCAGTAGCAAAATGGGATTTGGTACTGCTAAGCAGTAGCAAAATCCGAATTTACTACTGCTAAGCAGTAGCAAAAATGGGATTTGGTACTGCTTAGCAGTAGCAAAATTCAATTTTACACCTGCGAAGCAGTAGCAAAACGAGAATTTGCTGCTTCGCAGTAGCAAAATCTCAATTAGCAGTACCAAAATCG</canonical_amplicon>
		<polymorphic_amplicon>CCGAAAATATGCTTAATTCTAAAAAAGTCCAGAAAAAAACGACGAAAATTGACCGAAAACTGCAATTTTGGTGCTGCTCAGCAGTAGCAAAATGGGATTTGGTACTGCTAAGCAGTAGCAAAATCCGAATTTACTACTGCTAAGCAGTAGCAAAAATGGGATTTGGTACTGCTTAGCAGTAGCAAAATTCAATTTTACACCTGCKAAGCAGTAGCAAAACGAGAATTTGCTGCTTCGCAGTAGCAAAATCTCAATTAGCAGTACCAAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37480</snp_id>
        <super_contig>c012300929.Contig2</super_contig>
        <contig_pos>52668</contig_pos>
        <strand>+</strand>
        <context>CAGGAATTTG[G/T]CTTGGAGCGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCCTCATGCTGTTGTCTTTGAGGATATGTTGGAATTGAAACAGGAATTTG</left_flank>
        <right_flank>CTTGGAGCGTATTGGGATGGGGCTCGATTAATTTTTCTTACGGCAAAGCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCTTCTCTGCTATTCTTGAATGCTTCATAACTAGGTAGGTTGTCGCAATCTTGTTTGATCTTTAAATATTCATCATAATTTGGTAATGGGAGTGGTTGGAAGTTAACAGGTTCTTTTTGAGCCGATCGAAGATCTGCGATCTCTCTTTTGGTTCTGTTGGATTTTGCTTGAGGTGGGTTTCGATTGTCTTTATCGTAAACTGTCCAATCTTCTTCTTTCCGCTGTTTCTTCAACGTTTCGACTTCTTTTCTTTCAGCCTCTTCCTGAGCTTTCTTAGTTTTCTCTTGTTTCTTTTTCTCAAATTCTTCTTCCTTCTTCAGTTTCTCTTGTTTTCTTTTCTCAAAATCTTTCAGATCTGCTTCATACTGTTTTTGCCTTTCTTGTTCTCGCTTTCGTTCTTCCAGATCACGCTTTCTTTGTTCTTCTTGCTCTCGTTTTCTTCTGTCATCCTCATGCTGTTGTCTTTGAGGATATGTTGGAATTGAAACAGGAATTTGGCTTGGAGCGTATTGGGATGGGGCTCGATTAATTTTTCTTACGGCAAAGCCTTCATCACTAATCATCAGGTCTATGTTACAATCAGTCACAGTTTTGTTTGATTGAAAGTTTAATGCGATTTGGTTTTTATTGTTAACCCAAAGTTTGTTATTGTATATCCCATCAAGTATTCCTATCGAGATGTATTGACATTTCTGATCTCTGTTAACATCCCAAGTGATAATTTCATTCTTCTTTATGTCACAAAATCCATCTTGATATTTGCAATTGTTCATGTTGGCAAGAATGTTAGTTGGTTTAGATTGATTGAAATGAGAGTAAACCTTTGTTTCAATAACTATACAATTCTCCTTGTAATATCTTTTAGGGGTGAAAATGCTGGTAAATCTATTTGGATAATCTACATCAATTTTGTTATTAGTACTCCATGTGTTAGAGGTGCCTTTTGATAACGTTCCATAATCACATTTCTTGTTATTGATCATTTCTCTACATTCGGA</canonical>
            <polymorphic>ATCCTTCTCTGCTATTCTTGAATGCTTCATAACTAGGTAGGTTGTCGCAATCTTGTTTGATCTTTAAATATTCATCATAATTTGGTAATGGGAGTGGTTGGAAGTTAACAGGTTCTTTTTGAGCCGATCGAAGATCTGCGATCTCTCTTTTGGTTCTGTTGGATTTTGCTTGAGGTGGGTTTCGATTGTCTTTATCGTAAACTGTCCAATCTTCTTCTTTCCGCTGTTTCTTCAACGTTTCGACTTCTTTTCTTTCAGCCTCTTCCTGAGCTTTCTTAGTTTTCTCTTGTTTCTTTTTCTCAAATTCTTCTTCCTTCTTCAGTTTCTCTTGTTTTCTTTTCTCAAAATCTTTCAGATCTGCTTCATACTGTTTTTGCCTTTCTTGTTCTCGCTTTCGTTCTTCCAGATCACGCTTTCTTTGTTCTTCTTGCTCTCGTTTTCTTCTGTCATCCTCATGCTGTTGTCTTTGAGGATATGTTGGAATTGAAACAGGAATTTGKCTTGGAGCGTATTGGGATGGGGCTCGATTAATTTTTCTTACGGCAAAGCCTTCATCACTAATCATCAGGTCTATGTTACAATCAGTCACAGTTTTGTTTGATTGAAAGTTTAATGCGATTTGGTTTTTATTGTTAACCCAAAGTTTGTTATTGTATATCCCATCAAGTATTCCTATCGAGATGTATTGACATTTCTGATCTCTGTTAACATCCCAAGTGATAATTTCATTCTTCTTTATGTCACAAAATCCATCTTGATATTTGCAATTGTTCATGTTGGCAAGAATGTTAGTTGGTTTAGATTGATTGAAATGAGAGTAAACCTTTGTTTCAATAACTATACAATTCTCCTTGTAATATCTTTTAGGGGTGAAAATGCTGGTAAATCTATTTGGATAATCTACATCAATTTTGTTATTAGTACTCCATGTGTTAGAGGTGCCTTTTGATAACGTTCCATAATCACATTTCTTGTTATTGATCATTTCTCTACATTCGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>452 230 135 123 26 22 12</canonical_bands>
                <polymorphic_bands>452 252 135 123 26 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTCAGATCTGCTTCATACTGT</pcr_primer_p1>
		<pcr_primer_p2>AACAAAACTGTGACTGATTGTAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTCAGATCTGCTTCATACTGTTTTTGCCTTTCTTGTTCTCGCTTTCGTTCTTCCAGATCACGCTTTCTTTGTTCTTCTTGCTCTCGTTTTCTTCTGTCATCCTCATGCTGTTGTCTTTGAGGATATGTTGGAATTGAAACAGGAATTTGGCTTGGAGCGTATTGGGATGGGGCTCGATTAATTTTTCTTACGGCAAAGCCTTCATCACTAATCATCAGGTCTATGTTACAATCAGTCACAGTTTTGTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTCAGATCTGCTTCATACTGTTTTTGCCTTTCTTGTTCTCGCTTTCGTTCTTCCAGATCACGCTTTCTTTGTTCTTCTTGCTCTCGTTTTCTTCTGTCATCCTCATGCTGTTGTCTTTGAGGATATGTTGGAATTGAAACAGGAATTTGKCTTGGAGCGTATTGGGATGGGGCTCGATTAATTTTTCTTACGGCAAAGCCTTCATCACTAATCATCAGGTCTATGTTACAATCAGTCACAGTTTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37481</snp_id>
        <super_contig>c012300929.Contig2</super_contig>
        <contig_pos>52796</contig_pos>
        <strand>+</strand>
        <context>ATTTGGTTTT[C/T]ATTGTTAACC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAATCAGTCACAGTTTTGTTTGATTGAAAGTTTAATGCGATTTGGTTTT</left_flank>
        <right_flank>ATTGTTAACCCAAAGTTTGTTATTGTATATCCCATCAAGTATTCCTATCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAAGATCTGCGATCTCTCTTTTGGTTCTGTTGGATTTTGCTTGAGGTGGGTTTCGATTGTCTTTATCGTAAACTGTCCAATCTTCTTCTTTCCGCTGTTTCTTCAACGTTTCGACTTCTTTTCTTTCAGCCTCTTCCTGAGCTTTCTTAGTTTTCTCTTGTTTCTTTTTCTCAAATTCTTCTTCCTTCTTCAGTTTCTCTTGTTTTCTTTTCTCAAAATCTTTCAGATCTGCTTCATACTGTTTTTGCCTTTCTTGTTCTCGCTTTCGTTCTTCCAGATCACGCTTTCTTTGTTCTTCTTGCTCTCGTTTTCTTCTGTCATCCTCATGCTGTTGTCTTTGAGGATATGTTGGAATTGAAACAGGAATTTGGCTTGGAGCGTATTGGGATGGGGCTCGATTAATTTTTCTTACGGCAAAGCCTTCATCACTAATCATCAGGTCTATGTTACAATCAGTCACAGTTTTGTTTGATTGAAAGTTTAATGCGATTTGGTTTTTATTGTTAACCCAAAGTTTGTTATTGTATATCCCATCAAGTATTCCTATCGAGATGTATTGACATTTCTGATCTCTGTTAACATCCCAAGTGATAATTTCATTCTTCTTTATGTCACAAAATCCATCTTGATATTTGCAATTGTTCATGTTGGCAAGAATGTTAGTTGGTTTAGATTGATTGAAATGAGAGTAAACCTTTGTTTCAATAACTATACAATTCTCCTTGTAATATCTTTTAGGGGTGAAAATGCTGGTAAATCTATTTGGATAATCTACATCAATTTTGTTATTAGTACTCCATGTGTTAGAGGTGCCTTTTGATAACGTTCCATAATCACATTTCTTGTTATTGATCATTTCTCTACATTCGGAAAGTGTAATTGGATAATGATTAAGCTCTTTTTCAACCAAGTGTTCATATCCAGAAAGGTCAGTATATACTGAAACTTCGCTAACTAATTTTTTACATAGTTTTGCATCTGAAACATATTCAATAATGT</canonical>
            <polymorphic>CGAAGATCTGCGATCTCTCTTTTGGTTCTGTTGGATTTTGCTTGAGGTGGGTTTCGATTGTCTTTATCGTAAACTGTCCAATCTTCTTCTTTCCGCTGTTTCTTCAACGTTTCGACTTCTTTTCTTTCAGCCTCTTCCTGAGCTTTCTTAGTTTTCTCTTGTTTCTTTTTCTCAAATTCTTCTTCCTTCTTCAGTTTCTCTTGTTTTCTTTTCTCAAAATCTTTCAGATCTGCTTCATACTGTTTTTGCCTTTCTTGTTCTCGCTTTCGTTCTTCCAGATCACGCTTTCTTTGTTCTTCTTGCTCTCGTTTTCTTCTGTCATCCTCATGCTGTTGTCTTTGAGGATATGTTGGAATTGAAACAGGAATTTGGCTTGGAGCGTATTGGGATGGGGCTCGATTAATTTTTCTTACGGCAAAGCCTTCATCACTAATCATCAGGTCTATGTTACAATCAGTCACAGTTTTGTTTGATTGAAAGTTTAATGCGATTTGGTTTTYATTGTTAACCCAAAGTTTGTTATTGTATATCCCATCAAGTATTCCTATCGAGATGTATTGACATTTCTGATCTCTGTTAACATCCCAAGTGATAATTTCATTCTTCTTTATGTCACAAAATCCATCTTGATATTTGCAATTGTTCATGTTGGCAAGAATGTTAGTTGGTTTAGATTGATTGAAATGAGAGTAAACCTTTGTTTCAATAACTATACAATTCTCCTTGTAATATCTTTTAGGGGTGAAAATGCTGGTAAATCTATTTGGATAATCTACATCAATTTTGTTATTAGTACTCCATGTGTTAGAGGTGCCTTTTGATAACGTTCCATAATCACATTTCTTGTTATTGATCATTTCTCTACATTCGGAAAGTGTAATTGGATAATGATTAAGCTCTTTTTCAACCAAGTGTTCATATCCAGAAAGGTCAGTATATACTGAAACTTCGCTAACTAATTTTTTACATAGTTTTGCATCTGAAACATATTCAATAATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTACAATCAGTCACAGTTTTG</pcr_primer_p1>
		<pcr_primer_p2>AGGTTTACTCTCATTTCAATCAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TGTTACAATCAGTCACAGTTTTGTTTGATTGAAAGTTTAATGCGATTTGGTTTTTATTGTTAACCCAAAGTTTGTTATTGTATATCCCATCAAGTATTCCTATCGAGATGTATTGACATTTCTGATCTCTGTTAACATCCCAAGTGATAATTTCATTCTTCTTTATGTCACAAAATCCATCTTGATATTTGCAATTGTTCATGTTGGCAAGAATGTTAGTTGGTTTAGATTGATTGAAATGAGAGTAAACCT</canonical_amplicon>
		<polymorphic_amplicon>TGTTACAATCAGTCACAGTTTTGTTTGATTGAAAGTTTAATGCGATTTGGTTTTYATTGTTAACCCAAAGTTTGTTATTGTATATCCCATCAAGTATTCCTATCGAGATGTATTGACATTTCTGATCTCTGTTAACATCCCAAGTGATAATTTCATTCTTCTTTATGTCACAAAATCCATCTTGATATTTGCAATTGTTCATGTTGGCAAGAATGTTAGTTGGTTTAGATTGATTGAAATGAGAGTAAACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37482</snp_id>
        <super_contig>c012300976.Contig2</super_contig>
        <contig_pos>12684</contig_pos>
        <strand>+</strand>
        <context>TTTGAGATGT[C/T]TACAACTAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGAAATTAATTTGCGAACACAAAAGGGAAACACGAATATTTTGAGATGT</left_flank>
        <right_flank>TACAACTAGTCAACGATTGAAATTGAAAAAAAGTGGATGTTAAAATCGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTATTGATTGAGAAAGTCATTTAGGCTATGAGAAGATCGTGAAACGGGAATTTTTGAAATCTAGCAAAATCGTCTTCCAAGAAAAAAAAGACACATATAAAAATTTTCCTTTTTTCGTCTCCAAAAAATAATAGACAGGTGTGAAGTAAGCCTTCGGGGACTCTTTTAATATATCAGTAGAAAGAGCTTAGTTGCCGTTTTGTCCCCCTTCTGAGGTTGCCAATTATGGATACCTCACCTAAAGTAGTGTAGAGATGGCAGGTGGTGTTCAGGGCTCGATGAGCCGGTATAATGCCTTGAAGGGTATTTGGTAGAAGTGGACGAGAGACACATGTACATATTATTTGGGAGGGGACCATCACAGTTGATGAAGAGAGACAGAGGATAGACAGAAGGTATAAGGTCTATGGAATTGGTGATGAGTAGGATACACAGGAACAATGCGTTATGGAAATTAATTTGCGAACACAAAAGGGAAACACGAATATTTTGAGATGTCTACAACTAGTCAACGATTGAAATTGAAAAAAAGTGGATGTTAAAATCGAACATTTGAAACAGGAAAAAATATCAAAAAACCACAGACATACACCAAAGTGTCAAATTTATCGAATTTGTGCTGGAATTTTTGTAAAAATTAGAAATTTCATAAAACTGAAATCTTAACAATTTCTGGACATTTAAAAAAATTGCAAGAAGCATCAAAACTATATTTTCCAAGAATTAATTATTACCTTGAAAAAACAATAATAAATTGTTCCTGAATTTCTATAGGAAAATAATATTAAACTGAAAATTCAAGAAATTTCTAGATGAGCGGAAAATTTGGATACTGTAGTTTTAAAAATGGGTATCCTAGGTACCCCTAAAAATTGCTCATTTCTGTTGAAAATTGGTTTCTGTTTCAAATTGCTCCGCTTAAAAAATCTTGAAAGACATTGCACATTTGTATACGGTAATAGTAAATGTTTGTAGCAAGAACCACAATGAAATTTGTTA</canonical>
            <polymorphic>ATTATTGATTGAGAAAGTCATTTAGGCTATGAGAAGATCGTGAAACGGGAATTTTTGAAATCTAGCAAAATCGTCTTCCAAGAAAAAAAAGACACATATAAAAATTTTCCTTTTTTCGTCTCCAAAAAATAATAGACAGGTGTGAAGTAAGCCTTCGGGGACTCTTTTAATATATCAGTAGAAAGAGCTTAGTTGCCGTTTTGTCCCCCTTCTGAGGTTGCCAATTATGGATACCTCACCTAAAGTAGTGTAGAGATGGCAGGTGGTGTTCAGGGCTCGATGAGCCGGTATAATGCCTTGAAGGGTATTTGGTAGAAGTGGACGAGAGACACATGTACATATTATTTGGGAGGGGACCATCACAGTTGATGAAGAGAGACAGAGGATAGACAGAAGGTATAAGGTCTATGGAATTGGTGATGAGTAGGATACACAGGAACAATGCGTTATGGAAATTAATTTGCGAACACAAAAGGGAAACACGAATATTTTGAGATGTYTACAACTAGTCAACGATTGAAATTGAAAAAAAGTGGATGTTAAAATCGAACATTTGAAACAGGAAAAAATATCAAAAAACCACAGACATACACCAAAGTGTCAAATTTATCGAATTTGTGCTGGAATTTTTGTAAAAATTAGAAATTTCATAAAACTGAAATCTTAACAATTTCTGGACATTTAAAAAAATTGCAAGAAGCATCAAAACTATATTTTCCAAGAATTAATTATTACCTTGAAAAAACAATAATAAATTGTTCCTGAATTTCTATAGGAAAATAATATTAAACTGAAAATTCAAGAAATTTCTAGATGAGCGGAAAATTTGGATACTGTAGTTTTAAAAATGGGTATCCTAGGTACCCCTAAAAATTGCTCATTTCTGTTGAAAATTGGTTTCTGTTTCAAATTGCTCCGCTTAAAAAATCTTGAAAGACATTGCACATTTGTATACGGTAATAGTAAATGTTTGTAGCAAGAACCACAATGAAATTTGTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>499 452 49</canonical_bands>
                <polymorphic_bands>951 49</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATGAAGAGAGACAGAGGATAG</pcr_primer_p1>
		<pcr_primer_p2>AATTCGATAAATTTGACACTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGATGAAGAGAGACAGAGGATAGACAGAAGGTATAAGGTCTATGGAATTGGTGATGAGTAGGATACACAGGAACAATGCGTTATGGAAATTAATTTGCGAACACAAAAGGGAAACACGAATATTTTGAGATGTCTACAACTAGTCAACGATTGAAATTGAAAAAAAGTGGATGTTAAAATCGAACATTTGAAACAGGAAAAAATATCAAAAAACCACAGACATACACCAAAGTGTCAAATTTATCGAATT</canonical_amplicon>
		<polymorphic_amplicon>TGATGAAGAGAGACAGAGGATAGACAGAAGGTATAAGGTCTATGGAATTGGTGATGAGTAGGATACACAGGAACAATGCGTTATGGAAATTAATTTGCGAACACAAAAGGGAAACACGAATATTTTGAGATGTYTACAACTAGTCAACGATTGAAATTGAAAAAAAGTGGATGTTAAAATCGAACATTTGAAACAGGAAAAAATATCAAAAAACCACAGACATACACCAAAGTGTCAAATTTATCGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37483</snp_id>
        <super_contig>c012301175.Contig1</super_contig>
        <contig_pos>23561</contig_pos>
        <strand>+</strand>
        <context>ATTACAGTAC[C/T]CTGTCACCCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTACTCGTCAATCTGGAATCTGAGTCACTATGACACACAATTACAGTAC</left_flank>
        <right_flank>CTGTCACCCTCTAATGCGTTTATGTTTTCGAACAACGTCTTTGAGCCATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGAACAATTTCTTTTTCCTAACTTTAAACTCTCCTACAAGCAGTCGGAAACTTTAGATCAGGAATTAGCTGAAGAAGAACCAACTTGATGAAAAAAAAGGGTAACAAGAATGATTTTCAATTACGGTACTGCATGATAAGAAATCAGAAAAAAATTTCGAAACGAAATGGAAAAAGTAAGAACGACTACTACAATGATAACGGTCACTGTCGTCCGTTTTGTAAAACGAGAGAATTCTGGAATCATCGAAATGTGTTACAAAAAGTTTACTGCATTTTTACTCAACACTCCCGCAAACTTTTTGTTGTTGCGCGAACCTCAGTGTAACATGACACATATCACGAGACCAAGGACCGAGATACAGCTTCTACAGTCCGAAAATCATGAGCGATAAATCTATGTCTAGATTATTTTCTAAACTTGCTACATTGCGTGGACAGCAATGTTTCTACTCGTCAATCTGGAATCTGAGTCACTATGACACACAATTACAGTACCCTGTCACCCTCTAATGCGTTTATGTTTTCGAACAACGTCTTTGAGCCATGTTTTTTGTGTCGAAAAATTATTGTACTTCGATGTTAAATAAAATCATTGCGAATAAAAAAAATCAACAATTTTTTGAATGTGAAAAATAAATAGACATGAGATCGAAAGAAAATGAAAAAGGTTTTAACAATGGGATGGATTTTCTTCTTTTTCTTCGATTCGTTCCTCGTTCTTTTCAGCTGTTTTATCAGTGTCCTCATTTAATGGTACTGGTGTCACTTTCTTGATTTCTGGAGCTTCCGACTCGAGATTTTTTTCCGTGGTCTTCTTTTTACGGAATCCAAAAACCAGATACATGCAAATCGCTTCCCATTCTGACTTGGAAAGTGTTCCGACAAATTTTGGCACATTATCTCCGAGCGAATCAATTTTCGCTTTGGCTTCCAAATATTCTTCGTCGGTTTTCCCACTGAGATTTCGATTCGGGAACGTTTCGAGACCTTTCATGC</canonical>
            <polymorphic>TTCGAACAATTTCTTTTTCCTAACTTTAAACTCTCCTACAAGCAGTCGGAAACTTTAGATCAGGAATTAGCTGAAGAAGAACCAACTTGATGAAAAAAAAGGGTAACAAGAATGATTTTCAATTACGGTACTGCATGATAAGAAATCAGAAAAAAATTTCGAAACGAAATGGAAAAAGTAAGAACGACTACTACAATGATAACGGTCACTGTCGTCCGTTTTGTAAAACGAGAGAATTCTGGAATCATCGAAATGTGTTACAAAAAGTTTACTGCATTTTTACTCAACACTCCCGCAAACTTTTTGTTGTTGCGCGAACCTCAGTGTAACATGACACATATCACGAGACCAAGGACCGAGATACAGCTTCTACAGTCCGAAAATCATGAGCGATAAATCTATGTCTAGATTATTTTCTAAACTTGCTACATTGCGTGGACAGCAATGTTTCTACTCGTCAATCTGGAATCTGAGTCACTATGACACACAATTACAGTACYCTGTCACCCTCTAATGCGTTTATGTTTTCGAACAACGTCTTTGAGCCATGTTTTTTGTGTCGAAAAATTATTGTACTTCGATGTTAAATAAAATCATTGCGAATAAAAAAAATCAACAATTTTTTGAATGTGAAAAATAAATAGACATGAGATCGAAAGAAAATGAAAAAGGTTTTAACAATGGGATGGATTTTCTTCTTTTTCTTCGATTCGTTCCTCGTTCTTTTCAGCTGTTTTATCAGTGTCCTCATTTAATGGTACTGGTGTCACTTTCTTGATTTCTGGAGCTTCCGACTCGAGATTTTTTTCCGTGGTCTTCTTTTTACGGAATCCAAAAACCAGATACATGCAAATCGCTTCCCATTCTGACTTGGAAAGTGTTCCGACAAATTTTGGCACATTATCTCCGAGCGAATCAATTTTCGCTTTGGCTTCCAAATATTCTTCGTCGGTTTTCCCACTGAGATTTCGATTCGGGAACGTTTCGAGACCTTTCATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGATACAGCTTCTACAGTCC</pcr_primer_p1>
		<pcr_primer_p2>TTATTCGCAATGATTTTATTTAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGAGATACAGCTTCTACAGTCCGAAAATCATGAGCGATAAATCTATGTCTAGATTATTTTCTAAACTTGCTACATTGCGTGGACAGCAATGTTTCTACTCGTCAATCTGGAATCTGAGTCACTATGACACACAATTACAGTACCCTGTCACCCTCTAATGCGTTTATGTTTTCGAACAACGTCTTTGAGCCATGTTTTTTGTGTCGAAAAATTATTGTACTTCGATGTTAAATAAAATCATTGCGAATAA</canonical_amplicon>
		<polymorphic_amplicon>CGAGATACAGCTTCTACAGTCCGAAAATCATGAGCGATAAATCTATGTCTAGATTATTTTCTAAACTTGCTACATTGCGTGGACAGCAATGTTTCTACTCGTCAATCTGGAATCTGAGTCACTATGACACACAATTACAGTACYCTGTCACCCTCTAATGCGTTTATGTTTTCGAACAACGTCTTTGAGCCATGTTTTTTGTGTCGAAAAATTATTGTACTTCGATGTTAAATAAAATCATTGCGAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37484</snp_id>
        <super_contig>c012301175.Contig1</super_contig>
        <contig_pos>25097</contig_pos>
        <strand></strand>
        <context>tgagtcgcga[C/A]gcgacgaaca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TAAAAATAAAATATAGATTGACGTGATCTTTAAAAAAAAGTGAGTCGCGA</left_flank>
        <right_flank>GCGACGAACAGTAAAAGAAAATGTTAATTCCAGCTGTTTGAAGCGCCGGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAACACATTTATATTTACGTGACCCTTTTATTTAGAAAAAGTGAGAAACGAAGCGACGAACATTTGAAAAAATTAGATTGAATCGCGCCGAAGGCGCACCAGCTTGCTGGTAATAAATAAATGAAGTTGCGTCTCTTTCTCTCTGTCGGTCAATCTGTCCGCGAATTTCGAAAAACTTAAAGGTGAGGGGACATGAAAAAATAATGTTCTCGAAATTTCGTTTAAATATACCCCTCGAGGAGTTGAACTTGTTGGGGCAATGATTGAGGGTACGGCGCCGCTACCGACTGAGCTTCACGGGCAAAAAAAAGCGGTCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGTCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAAAATAAAATATAGATTGACGTGATCTTTAAAAAAAAGTGAGTCGCGACGCGACGAACAGTAAAAGAAAATGTTAATTCCAGCTGTTTGAAGCGCCGGAGGCGCGGCGAACAGGCTGGTAAATTTCTAATAATGCTGTGTCCTAATTTTTAATATACTTGAAAACTTACACAATTCTGTCTGCGTCTGGAAGCGTTCCGATGAAAACTCCGCCGAGTTTCAGTTTTCCGACCGCGTTCTTCAGGAAAGTTCTCGCAGAATCTTCATCTACGAAAGAATAATGCATAGCAAATTGGCAGCTAACCAAATCGAATGGCTCCTTGATCTCTATCTTGTCGTCAAGATTCTCCTGTAAGATTCTGCGTAAAATTGTTGAATTGTGTTCTCTGAACAAACCTTTGTACAATCTGCAACTATGAACTGAGCCCCAAAAATATCATGTGGGTATTTATGCATAGTTTTGTATCGTTCTTCGGCTTGCTGAATAGATACATCAGCGACATCTAAAATAGAATTAGATCTTTGAATGTCAAAAGTTTTATATAAACTC</canonical>
            <polymorphic>GAAAAACACATTTATATTTACGTGACCCTTTTATTTAGAAAAAGTGAGAAACGAAGCGACGAACATTTGAAAAAATTAGATTGAATCGCGCCGAAGGCGCACCAGCTTGCTGGTAATAAATAAATGAAGTTGCGTCTCTTTCTCTCTGTCGGTCAATCTGTCCGCGAATTTCGAAAAACTTAAAGGTGAGGGGACATGAAAAAATAATGTTCTCGAAATTTCGTTTAAATATACCCCTCGAGGAGTTGAACTTGTTGGGGCAATGATTGAGGGTACGGCGCCGCTACCGACTGAGCTTCACGGGCAAAAAAAAGCGGTCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGTCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAAAATAAAATATAGATTGACGTGATCTTTAAAAAAAAGTGAGTCGCGAMGCGACGAACAGTAAAAGAAAATGTTAATTCCAGCTGTTTGAAGCGCCGGAGGCGCGGCGAACAGGCTGGTAAATTTCTAATAATGCTGTGTCCTAATTTTTAATATACTTGAAAACTTACACAATTCTGTCTGCGTCTGGAAGCGTTCCGATGAAAACTCCGCCGAGTTTCAGTTTTCCGACCGCGTTCTTCAGGAAAGTTCTCGCAGAATCTTCATCTACGAAAGAATAATGCATAGCAAATTGGCAGCTAACCAAATCGAATGGCTCCTTGATCTCTATCTTGTCGTCAAGATTCTCCTGTAAGATTCTGCGTAAAATTGTTGAATTGTGTTCTCTGAACAAACCTTTGTACAATCTGCAACTATGAACTGAGCCCCAAAAATATCATGTGGGTATTTATGCATAGTTTTGTATCGTTCTTCGGCTTGCTGAATAGATACATCAGCGACATCTAAAATAGAATTAGATCTTTGAATGTCAAAAGTTTTATATAAACTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>332 316 130 88 76 53 5</canonical_bands>
                <polymorphic_bands>332 316 130 88 76 58</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>499 440 61</canonical_bands>
                <polymorphic_bands>494 445 61</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAAAAGCTAGTATTGAGAATCA</pcr_primer_p1>
		<pcr_primer_p2>ATTAGGACACAGCATTATTAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>698</pcr_amplicon_size>
		<canonical_amplicon>ACGCGACGAACAGTAAAAGAAAATGTTAATTCCAGCTGTTTGAAGCGCCGGAGGCGCGGCGAACAGGCTGGTAAATTTCTAATAATGCTGTGTCCTAAT</canonical_amplicon>
		<polymorphic_amplicon>AMGCGACGAACAGTAAAAGAAAATGTTAATTCCAGCTGTTTGAAGCGCCGGAGGCGCGGCGAACAGGCTGGTAAATTTCTAATAATGCTGTGTCCTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37485</snp_id>
        <super_contig>c012301175.Contig1</super_contig>
        <contig_pos>25280</contig_pos>
        <strand>+</strand>
        <context>GTTTTCCGAC[A/C]GCGTTCTTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCGTCTGGAAGCGTTCCGATGAAAACTCCGCCGAGTTTCAGTTTTCCGAC</left_flank>
        <right_flank>GCGTTCTTCAGGAAAGTTCTCGCAGAATCTTCATCTACGAAAGAATAATG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGTGAGGGGACATGAAAAAATAATGTTCTCGAAATTTCGTTTAAATATACCCCTCGAGGAGTTGAACTTGTTGGGGCAATGATTGAGGGTACGGCGCCGCTACCGACTGAGCTTCACGGGCAAAAAAAAGCGGTCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGTCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAAAATAAAATATAGATTGACGTGATCTTTAAAAAAAAGTGAGTCGCGACGCGACGAACAGTAAAAGAAAATGTTAATTCCAGCTGTTTGAAGCGCCGGAGGCGCGGCGAACAGGCTGGTAAATTTCTAATAATGCTGTGTCCTAATTTTTAATATACTTGAAAACTTACACAATTCTGTCTGCGTCTGGAAGCGTTCCGATGAAAACTCCGCCGAGTTTCAGTTTTCCGACCGCGTTCTTCAGGAAAGTTCTCGCAGAATCTTCATCTACGAAAGAATAATGCATAGCAAATTGGCAGCTAACCAAATCGAATGGCTCCTTGATCTCTATCTTGTCGTCAAGATTCTCCTGTAAGATTCTGCGTAAAATTGTTGAATTGTGTTCTCTGAACAAACCTTTGTACAATCTGCAACTATGAACTGAGCCCCAAAAATATCATGTGGGTATTTATGCATAGTTTTGTATCGTTCTTCGGCTTGCTGAATAGATACATCAGCGACATCTAAAATAGAATTAGATCTTTGAATGTCAAAAGTTTTATATAAACTCACCAGCCATTACGACATGTTTTGCTCCAGTAATATCCCATTTCCGTAGATCTCCACCCTTCCCACAGGCAATGTCCAGAACGACAGGGGATTTTACACCATTTTCGTTCACAAGTTTCATTGCGTCATCTGAAATTTAAAATTAGCAAGCTGAAAAAAATAGTTTTTGAGCTTACTAATGAGT</canonical>
            <polymorphic>AGGTGAGGGGACATGAAAAAATAATGTTCTCGAAATTTCGTTTAAATATACCCCTCGAGGAGTTGAACTTGTTGGGGCAATGATTGAGGGTACGGCGCCGCTACCGACTGAGCTTCACGGGCAAAAAAAAGCGGTCGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGTCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAAAATAAAATATAGATTGACGTGATCTTTAAAAAAAAGTGAGTCGCGACGCGACGAACAGTAAAAGAAAATGTTAATTCCAGCTGTTTGAAGCGCCGGAGGCGCGGCGAACAGGCTGGTAAATTTCTAATAATGCTGTGTCCTAATTTTTAATATACTTGAAAACTTACACAATTCTGTCTGCGTCTGGAAGCGTTCCGATGAAAACTCCGCCGAGTTTCAGTTTTCCGACMGCGTTCTTCAGGAAAGTTCTCGCAGAATCTTCATCTACGAAAGAATAATGCATAGCAAATTGGCAGCTAACCAAATCGAATGGCTCCTTGATCTCTATCTTGTCGTCAAGATTCTCCTGTAAGATTCTGCGTAAAATTGTTGAATTGTGTTCTCTGAACAAACCTTTGTACAATCTGCAACTATGAACTGAGCCCCAAAAATATCATGTGGGTATTTATGCATAGTTTTGTATCGTTCTTCGGCTTGCTGAATAGATACATCAGCGACATCTAAAATAGAATTAGATCTTTGAATGTCAAAAGTTTTATATAAACTCACCAGCCATTACGACATGTTTTGCTCCAGTAATATCCCATTTCCGTAGATCTCCACCCTTCCCACAGGCAATGTCCAGAACGACAGGGGATTTTACACCATTTTCGTTCACAAGTTTCATTGCGTCATCTGAAATTTAAAATTAGCAAGCTGAAAAAAATAGTTTTTGAGCTTACTAATGAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 313 130 53 5</canonical_bands>
                <polymorphic_bands>629 313 53 5</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 379 98 22</canonical_bands>
                <polymorphic_bands>523 379 98</polymorphic_bands>
            </assay>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>501 364 135</canonical_bands>
                <polymorphic_bands>865 135</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTTCTAATAATGCTGTGTCC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTACGCAGAATCTTACAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTTCTAATAATGCTGTGTCCTAATTTTTAATATACTTGAAAACTTACACAATTCTGTCTGCGTCTGGAAGCGTTCCGATGAAAACTCCGCCGAGTTTCAGTTTTCCGACCGCGTTCTTCAGGAAAGTTCTCGCAGAATCTTCATCTACGAAAGAATAATGCATAGCAAATTGGCAGCTAACCAAATCGAATGGCTCCTTGATCTCTATCTTGTCGTCAAGATTCTCCTGTAAGATTCTGCGTAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAATTTCTAATAATGCTGTGTCCTAATTTTTAATATACTTGAAAACTTACACAATTCTGTCTGCGTCTGGAAGCGTTCCGATGAAAACTCCGCCGAGTTTCAGTTTTCCGACMGCGTTCTTCAGGAAAGTTCTCGCAGAATCTTCATCTACGAAAGAATAATGCATAGCAAATTGGCAGCTAACCAAATCGAATGGCTCCTTGATCTCTATCTTGTCGTCAAGATTCTCCTGTAAGATTCTGCGTAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37486</snp_id>
        <super_contig>c012301175.Contig1</super_contig>
        <contig_pos>83142</contig_pos>
        <strand></strand>
        <context>GCGCATCATT[A/G]TCCAAACGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATCGACCAGTCAGCACCGCCACCAACACAGATCGAAGAGCGCATCATT</left_flank>
        <right_flank>TCCAAACGTCTTCTTCTTCTTCCTCTTCTCAACACACAACTGACACTCGT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAGAAGATAGAAAAATGTCCAAAAATGAGTTTCGCACTCAAGCAAATCCTGAAAAACTAATTTTTAATCTCGAAAAATTCCTGTTTTTTTTTTTCAAAATTTAATACTAAAAGCACTTTCAGAGACCATATTTCGGCTCCTTTTGAGAACGGGCTGAAAATTTTTTTGGATTCGGATTCAGCATGTTCGAAAGTACCTTTGTACAAAATTTGAGCGAATTCTCAACCGTTGTCTGAAAAACCTTCCCTTGTCAGATGTTTAACTTTTCGAATATTCTTTCAACGATAAACTAAGCTACTATAAAATAAAGTTTCCAGAAACCACAAAACTCACCTTGAATTCCGATGATTCTGGCTCTTTCGATTTGCTGACCAGTGGCTTTTTGCCATGCAAGAAACGAAGAAGCTGATTGACAAAATCCAACAAAATAAAGGATGAAAAGAAGGCGAATCGACCAGTCAGCACCGCCACCAACACAGATCGAAGAGCGCATCATTATCCAAACGTCTTCTTCTTCTTCCTCTTCTCAACACACAACTGACACTCGTATATATCGACAAAGGAGGGCGGTTCAATGCCCGCCCCTTGTTGTAGCGCCCGCAAATGGAACACTCCAACTTGTACCTTCACGACATACTTCTGCACAGCCCACTATTCAAAACTCGACGAGCAGCTCTTCGAGCCGTGAAATGCGTCGTCCGTCTTCAAATGCAACATTCACTTCGGATGTTTTGAGAAAACCCGTTCAGATAACTGCAGACCCTCGAGTCTATAAAGGATCTGTTTTTGCGAATCGAAGATTGGCTCATGATAGAGTAAGTATGAAAAAGTTCCCGATTCAAAAAAGAAATCAGAGTGAAAACTCGTATTCCGCAAAGACCAAAATCATCGTTTTCTTTTCCGGCTCGACAAGCAGAACAAGTTGAATTAAAAGAGAAAAAATATCGAGTTGGAGTGATTCGAGAACAGCTGAATACGATTCTGCCACGTGTTCCTGT</canonical>
            <polymorphic>TTTAGAAGATAGAAAAATGTCCAAAAATGAGTTTCGCACTCAAGCAAATCCTGAAAAACTAATTTTTAATCTCGAAAAATTCCTGTTTTTTTTTTTCAAAATTTAATACTAAAAGCACTTTCAGAGACCATATTTCGGCTCCTTTTGAGAACGGGCTGAAAATTTTTTTGGATTCGGATTCAGCATGTTCGAAAGTACCTTTGTACAAAATTTGAGCGAATTCTCAACCGTTGTCTGAAAAACCTTCCCTTGTCAGATGTTTAACTTTTCGAATATTCTTTCAACGATAAACTAAGCTACTATAAAATAAAGTTTCCAGAAACCACAAAACTCACCTTGAATTCCGATGATTCTGGCTCTTTCGATTTGCTGACCAGTGGCTTTTTGCCATGCAAGAAACGAAGAAGCTGATTGACAAAATCCAACAAAATAAAGGATGAAAAGAAGGCGAATCGACCAGTCAGCACCGCCACCAACACAGATCGAAGAGCGCATCATTRTCCAAACGTCTTCTTCTTCTTCCTCTTCTCAACACACAACTGACACTCGTATATATCGACAAAGGAGGGCGGTTCAATGCCCGCCCCTTGTTGTAGCGCCCGCAAATGGAACACTCCAACTTGTACCTTCACGACATACTTCTGCACAGCCCACTATTCAAAACTCGACGAGCAGCTCTTCGAGCCGTGAAATGCGTCGTCCGTCTTCAAATGCAACATTCACTTCGGATGTTTTGAGAAAACCCGTTCAGATAACTGCAGACCCTCGAGTCTATAAAGGATCTGTTTTTGCGAATCGAAGATTGGCTCATGATAGAGTAAGTATGAAAAAGTTCCCGATTCAAAAAAGAAATCAGAGTGAAAACTCGTATTCCGCAAAGACCAAAATCATCGTTTTCTTTTCCGGCTCGACAAGCAGAACAAGTTGAATTAAAAGAGAAAAAATATCGAGTTGGAGTGATTCGAGAACAGCTGAATACGATTCTGCCACGTGTTCCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACAAAATAAAGGATGAAAAGA</pcr_primer_p1>
		<pcr_primer_p2>CTCGTCGAGTTTTGAATAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAACAAAATAAAGGATGAAAAGAAGGCGAATCGACCAGTCAGCACCGCCACCAACACAGATCGAAGAGCGCATCATTATCCAAACGTCTTCTTCTTCTTCCTCTTCTCAACACACAACTGACACTCGTATATATCGACAAAGGAGGGCGGTTCAATGCCCGCCCCTTGTTGTAGCGCCCGCAAATGGAACACTCCAACTTGTACCTTCACGACATACTTCTGCACAGCCCACTATTCAAAACTCGACGAG</canonical_amplicon>
		<polymorphic_amplicon>CAACAAAATAAAGGATGAAAAGAAGGCGAATCGACCAGTCAGCACCGCCACCAACACAGATCGAAGAGCGCATCATTRTCCAAACGTCTTCTTCTTCTTCCTCTTCTCAACACACAACTGACACTCGTATATATCGACAAAGGAGGGCGGTTCAATGCCCGCCCCTTGTTGTAGCGCCCGCAAATGGAACACTCCAACTTGTACCTTCACGACATACTTCTGCACAGCCCACTATTCAAAACTCGACGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37487</snp_id>
        <super_contig>c012400948.Contig5</super_contig>
        <contig_pos>8448</contig_pos>
        <strand>+</strand>
        <context>AGTCGGCAAA[A/T]TCGACATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTACTTTCCGAATTCATTCCAGCCTCATAGCATTTTTGGAGTCGGCAAA</left_flank>
        <right_flank>TCGACATTTTCGAGCAAATTTTAGGTGATTTTTGCACTTTTTTGATGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACGAAAAATCTCCTGTCCCCCCACCTTAAAAAAATAGTCCCTGAGCGAGAGTGGAAAACACTTTTCTGTAAGGTGACTACTGTAAGTGGAACCCAGGAGGTTTAGCCCCGGAAGGGCGTAAACCGACTGGTATACAAACATTCAAAAAGTTGAAAAAATACCATGTCTATAAGTCCTGCGGCCTTTTCCAATAACGGCCAACAATCAATCACATCTTTTTTCAAAATTAAAATTTCCGGATTACAGCTTAGCACGAAATGTGGGCGACCCACAAATTGTTCCATGGACTGAAAAAAATTTCAACATAAAAGAAAAAATGTTCCCCTTACTCTATAAATCACTTTCTCTGTGAGCCCGCTTTTGCTCCGATCAGATCCCGACAAAATTGGAAATCTGGAAAAAAAATTTTTTTTGGAATTTTTTTTTCAAAATTTCAGAATTTCCAGACTTACTTTCCGAATTCATTCCAGCCTCATAGCATTTTTGGAGTCGGCAAAATCGACATTTTCGAGCAAATTTTAGGTGATTTTTGCACTTTTTTGATGAATTTCGAGGAGCGGCTCTTCTAAAACATCGGAAATTCAGAAATTTAGAAATTTTTTAAATTAACTTCTAGATCAAAATTTTCTGAATTTTTCAAATTTTCCACTAATTTTATACCATTTCTTACCTAAAAAACGCTGCACACGCTCTACAAGTGTATGCACCAAAATGCATGCCATTTCCAGGCTCCGGGCAAACGGAGCATTTTTCGGAACTCGAGCTGGGAGAATTGTTTTCCATCTGCAAAAAAAAAATTTTTTTAACTAAGAAAAGTGGACCAGAAATCATAAAAAATGGCTTTAAAATCATGAAAAATGGACCTAAATCCATGAAAAATCGAAAAAAAAGAGAAAAGTGCAGACACGCACAAAAAATTATAGATCATGAAAAATTGAGAGACGCAGAGAAATCGAATCATTCTTTTTTTTTTGTTTGATCAAACAAAAAACGAATTA</canonical>
            <polymorphic>CTACGAAAAATCTCCTGTCCCCCCACCTTAAAAAAATAGTCCCTGAGCGAGAGTGGAAAACACTTTTCTGTAAGGTGACTACTGTAAGTGGAACCCAGGAGGTTTAGCCCCGGAAGGGCGTAAACCGACTGGTATACAAACATTCAAAAAGTTGAAAAAATACCATGTCTATAAGTCCTGCGGCCTTTTCCAATAACGGCCAACAATCAATCACATCTTTTTTCAAAATTAAAATTTCCGGATTACAGCTTAGCACGAAATGTGGGCGACCCACAAATTGTTCCATGGACTGAAAAAAATTTCAACATAAAAGAAAAAATGTTCCCCTTACTCTATAAATCACTTTCTCTGTGAGCCCGCTTTTGCTCCGATCAGATCCCGACAAAATTGGAAATCTGGAAAAAAAATTTTTTTTGGAATTTTTTTTTCAAAATTTCAGAATTTCCAGACTTACTTTCCGAATTCATTCCAGCCTCATAGCATTTTTGGAGTCGGCAAAWTCGACATTTTCGAGCAAATTTTAGGTGATTTTTGCACTTTTTTGATGAATTTCGAGGAGCGGCTCTTCTAAAACATCGGAAATTCAGAAATTTAGAAATTTTTTAAATTAACTTCTAGATCAAAATTTTCTGAATTTTTCAAATTTTCCACTAATTTTATACCATTTCTTACCTAAAAAACGCTGCACACGCTCTACAAGTGTATGCACCAAAATGCATGCCATTTCCAGGCTCCGGGCAAACGGAGCATTTTTCGGAACTCGAGCTGGGAGAATTGTTTTCCATCTGCAAAAAAAAAATTTTTTTAACTAAGAAAAGTGGACCAGAAATCATAAAAAATGGCTTTAAAATCATGAAAAATGGACCTAAATCCATGAAAAATCGAAAAAAAAGAGAAAAGTGCAGACACGCACAAAAAATTATAGATCATGAAAAATTGAGAGACGCAGAGAAATCGAATCATTCTTTTTTTTTTGTTTGATCAAACAAAAAACGAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTCCCCTTACTCTATAAATCA</pcr_primer_p1>
		<pcr_primer_p2>CTCCTCGAAATTCATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TGTTCCCCTTACTCTATAAATCACTTTCTCTGTGAGCCCGCTTTTGCTCCGATCAGATCCCGACAAAATTGGAAATCTGGAAAAAAAATTTTTTTTGGAATTTTTTTTTCAAAATTTCAGAATTTCCAGACTTACTTTCCGAATTCATTCCAGCCTCATAGCATTTTTGGAGTCGGCAAAATCGACATTTTCGAGCAAATTTTAGGTGATTTTTGCACTTTTTTGATGAATTTCGAGGAG</canonical_amplicon>
		<polymorphic_amplicon>TGTTCCCCTTACTCTATAAATCACTTTCTCTGTGAGCCCGCTTTTGCTCCGATCAGATCCCGACAAAATTGGAAATCTGGAAAAAAAATTTTTTTTGGAATTTTTTTTTCAAAATTTCAGAATTTCCAGACTTACTTTCCGAATTCATTCCAGCCTCATAGCATTTTTGGAGTCGGCAAAWTCGACATTTTCGAGCAAATTTTAGGTGATTTTTGCACTTTTTTGATGAATTTCGAGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37488</snp_id>
        <super_contig>c012400948.Contig5</super_contig>
        <contig_pos>8459</contig_pos>
        <strand>+</strand>
        <context>TCGACATTTT[C/T]GAGCAAATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTCATTCCAGCCTCATAGCATTTTTGGAGTCGGCAAAATCGACATTTT</left_flank>
        <right_flank>GAGCAAATTTTAGGTGATTTTTGCACTTTTTTGATGAATTTCGAGGAGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCTGTCCCCCCACCTTAAAAAAATAGTCCCTGAGCGAGAGTGGAAAACACTTTTCTGTAAGGTGACTACTGTAAGTGGAACCCAGGAGGTTTAGCCCCGGAAGGGCGTAAACCGACTGGTATACAAACATTCAAAAAGTTGAAAAAATACCATGTCTATAAGTCCTGCGGCCTTTTCCAATAACGGCCAACAATCAATCACATCTTTTTTCAAAATTAAAATTTCCGGATTACAGCTTAGCACGAAATGTGGGCGACCCACAAATTGTTCCATGGACTGAAAAAAATTTCAACATAAAAGAAAAAATGTTCCCCTTACTCTATAAATCACTTTCTCTGTGAGCCCGCTTTTGCTCCGATCAGATCCCGACAAAATTGGAAATCTGGAAAAAAAATTTTTTTTGGAATTTTTTTTTCAAAATTTCAGAATTTCCAGACTTACTTTCCGAATTCATTCCAGCCTCATAGCATTTTTGGAGTCGGCAAAATCGACATTTTCGAGCAAATTTTAGGTGATTTTTGCACTTTTTTGATGAATTTCGAGGAGCGGCTCTTCTAAAACATCGGAAATTCAGAAATTTAGAAATTTTTTAAATTAACTTCTAGATCAAAATTTTCTGAATTTTTCAAATTTTCCACTAATTTTATACCATTTCTTACCTAAAAAACGCTGCACACGCTCTACAAGTGTATGCACCAAAATGCATGCCATTTCCAGGCTCCGGGCAAACGGAGCATTTTTCGGAACTCGAGCTGGGAGAATTGTTTTCCATCTGCAAAAAAAAAATTTTTTTAACTAAGAAAAGTGGACCAGAAATCATAAAAAATGGCTTTAAAATCATGAAAAATGGACCTAAATCCATGAAAAATCGAAAAAAAAGAGAAAAGTGCAGACACGCACAAAAAATTATAGATCATGAAAAATTGAGAGACGCAGAGAAATCGAATCATTCTTTTTTTTTTGTTTGATCAAACAAAAAACGAATTAGAGAATTAGAG</canonical>
            <polymorphic>CTCCTGTCCCCCCACCTTAAAAAAATAGTCCCTGAGCGAGAGTGGAAAACACTTTTCTGTAAGGTGACTACTGTAAGTGGAACCCAGGAGGTTTAGCCCCGGAAGGGCGTAAACCGACTGGTATACAAACATTCAAAAAGTTGAAAAAATACCATGTCTATAAGTCCTGCGGCCTTTTCCAATAACGGCCAACAATCAATCACATCTTTTTTCAAAATTAAAATTTCCGGATTACAGCTTAGCACGAAATGTGGGCGACCCACAAATTGTTCCATGGACTGAAAAAAATTTCAACATAAAAGAAAAAATGTTCCCCTTACTCTATAAATCACTTTCTCTGTGAGCCCGCTTTTGCTCCGATCAGATCCCGACAAAATTGGAAATCTGGAAAAAAAATTTTTTTTGGAATTTTTTTTTCAAAATTTCAGAATTTCCAGACTTACTTTCCGAATTCATTCCAGCCTCATAGCATTTTTGGAGTCGGCAAAATCGACATTTTYGAGCAAATTTTAGGTGATTTTTGCACTTTTTTGATGAATTTCGAGGAGCGGCTCTTCTAAAACATCGGAAATTCAGAAATTTAGAAATTTTTTAAATTAACTTCTAGATCAAAATTTTCTGAATTTTTCAAATTTTCCACTAATTTTATACCATTTCTTACCTAAAAAACGCTGCACACGCTCTACAAGTGTATGCACCAAAATGCATGCCATTTCCAGGCTCCGGGCAAACGGAGCATTTTTCGGAACTCGAGCTGGGAGAATTGTTTTCCATCTGCAAAAAAAAAATTTTTTTAACTAAGAAAAGTGGACCAGAAATCATAAAAAATGGCTTTAAAATCATGAAAAATGGACCTAAATCCATGAAAAATCGAAAAAAAAGAGAAAAGTGCAGACACGCACAAAAAATTATAGATCATGAAAAATTGAGAGACGCAGAGAAATCGAATCATTCTTTTTTTTTTGTTTGATCAAACAAAAAACGAATTAGAGAATTAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>491 209 121 73 55 42 9</canonical_bands>
                <polymorphic_bands>491 209 121 73 55 51</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTCATTCCAGCCTCATA</pcr_primer_p1>
		<pcr_primer_p2>TTTGGTGCATACACTTGTAGAG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GAATTCATTCCAGCCTCATAGCATTTTTGGAGTCGGCAAAATCGACATTTTCGAGCAAATTTTAGGTGATTTTTGCACTTTTTTGATGAATTTCGAGGAGCGGCTCTTCTAAAACATCGGAAATTCAGAAATTTAGAAATTTTTTAAATTAACTTCTAGATCAAAATTTTCTGAATTTTTCAAATTTTCCACTAATTTTATACCATTTCTTACCTAAAAAACGCTGCACACGCTCTACAAGTGTATGCACCAAA</canonical_amplicon>
		<polymorphic_amplicon>GAATTCATTCCAGCCTCATAGCATTTTTGGAGTCGGCAAAATCGACATTTTYGAGCAAATTTTAGGTGATTTTTGCACTTTTTTGATGAATTTCGAGGAGCGGCTCTTCTAAAACATCGGAAATTCAGAAATTTAGAAATTTTTTAAATTAACTTCTAGATCAAAATTTTCTGAATTTTTCAAATTTTCCACTAATTTTATACCATTTCTTACCTAAAAAACGCTGCACACGCTCTACAAGTGTATGCACCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37489</snp_id>
        <super_contig>c012400948.Contig5</super_contig>
        <contig_pos>34527</contig_pos>
        <strand>+</strand>
        <context>GCCAAAAACA[C/T]TTCAAATCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACCGATAGACGTAATGCGAGTTCTCTAACCTTTTCTCTGGCCAAAAACA</left_flank>
        <right_flank>TTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCACGCCAGTCTTGGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAAAACCTAAATATTCAAACTTGGCCAAATTTCTAAATTTTTCAGAAATTTAAAAAATTCAGAAAATCAGAAATTTCCGAAATTCAGGAATTCAGAGATTCAAACTTGTCAAAAATTCTAAATGTTCAAAAATTTAATTTTCTGAAAAATCACCCAAAAACACGCCGAAGGCACGCCAGCCTTCTGTAAATTGCTATTTTTTGGTCAATTTTTGCAAAAAATTGCAGATTTTTCAACCATTTTTTCGATTTTAACCCTGAAAATTGTGTGAAAATGAAACAAAAAAGGCTGAAAAATGAGCGATTTGCAAGAGGCTGGCGTGTCTTTGGCGCGAAATTTCTCGATTTGAAGCGTTTTTGGGTCATTTTAGAGCATTTCAAATGGGATTTTTCATGATTTCGGGTGATTTTATTTAAATTTTTAAGTTTAATTAGCCAATTAAATCCACCGATAGACGTAATGCGAGTTCTCTAACCTTTTCTCTGGCCAAAAACATTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCACGCCAGTCTTGGAAATCCGATTTTTTCGAAATTTTTCAGGCATTTTTCGGAATTTGTCATATAATTAGGGAAAATGCCTTCAAAATTTTAAAGGCAATAAAAAGATGGCTGAAAAATCTAAAAATTTCGAAAAAAAATTGAGCGATTTCCAAGAGGCTGGCGTGTCTTTGGCGCGTTTTGAACCTCCTCGATTTGCAGCTTTTTTTGCTAAGCAAGACTAAACGCTATATTTCGTCTTCTAGGAGCTTCCAAATTCCCAAAATTTCAGTCTCCTCTGCCTCCCACAAAACTCCGCTGCATTTCCGGTCCATTCAACCCAAAAACCGTACTCTTTCTGGTCCAACAAGGCATCGACCTGTTCGACTCGTCATTCGCCATCAAACTGGCCGAAGAGGGTCACGCCTTCTGCCTGGCAGACGACTATCCGACGTCTTCAAAATATGAAGTCGTGGATTTCAAAGATCA</canonical>
            <polymorphic>AAAAAAAAACCTAAATATTCAAACTTGGCCAAATTTCTAAATTTTTCAGAAATTTAAAAAATTCAGAAAATCAGAAATTTCCGAAATTCAGGAATTCAGAGATTCAAACTTGTCAAAAATTCTAAATGTTCAAAAATTTAATTTTCTGAAAAATCACCCAAAAACACGCCGAAGGCACGCCAGCCTTCTGTAAATTGCTATTTTTTGGTCAATTTTTGCAAAAAATTGCAGATTTTTCAACCATTTTTTCGATTTTAACCCTGAAAATTGTGTGAAAATGAAACAAAAAAGGCTGAAAAATGAGCGATTTGCAAGAGGCTGGCGTGTCTTTGGCGCGAAATTTCTCGATTTGAAGCGTTTTTGGGTCATTTTAGAGCATTTCAAATGGGATTTTTCATGATTTCGGGTGATTTTATTTAAATTTTTAAGTTTAATTAGCCAATTAAATCCACCGATAGACGTAATGCGAGTTCTCTAACCTTTTCTCTGGCCAAAAACAYTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCACGCCAGTCTTGGAAATCCGATTTTTTCGAAATTTTTCAGGCATTTTTCGGAATTTGTCATATAATTAGGGAAAATGCCTTCAAAATTTTAAAGGCAATAAAAAGATGGCTGAAAAATCTAAAAATTTCGAAAAAAAATTGAGCGATTTCCAAGAGGCTGGCGTGTCTTTGGCGCGTTTTGAACCTCCTCGATTTGCAGCTTTTTTTGCTAAGCAAGACTAAACGCTATATTTCGTCTTCTAGGAGCTTCCAAATTCCCAAAATTTCAGTCTCCTCTGCCTCCCACAAAACTCCGCTGCATTTCCGGTCCATTCAACCCAAAAACCGTACTCTTTCTGGTCCAACAAGGCATCGACCTGTTCGACTCGTCATTCGCCATCAAACTGGCCGAAGAGGGTCACGCCTTCTGCCTGGCAGACGACTATCCGACGTCTTCAAAATATGAAGTCGTGGATTTCAAAGATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCAAATGGGATTTTTCAT</pcr_primer_p1>
		<pcr_primer_p2>TTAAAATTTTGAAGGCATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTCAAATGGGATTTTTCATGATTTCGGGTGATTTTATTTAAATTTTTAAGTTTAATTAGCCAATTAAATCCACCGATAGACGTAATGCGAGTTCTCTAACCTTTTCTCTGGCCAAAAACATTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCACGCCAGTCTTGGAAATCCGATTTTTTCGAAATTTTTCAGGCATTTTTCGGAATTTGTCATATAATTAGGGAAAATGCCTTCAAAATTTTAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTCAAATGGGATTTTTCATGATTTCGGGTGATTTTATTTAAATTTTTAAGTTTAATTAGCCAATTAAATCCACCGATAGACGTAATGCGAGTTCTCTAACCTTTTCTCTGGCCAAAAACAYTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCACGCCAGTCTTGGAAATCCGATTTTTTCGAAATTTTTCAGGCATTTTTCGGAATTTGTCATATAATTAGGGAAAATGCCTTCAAAATTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37490</snp_id>
        <super_contig>c012400948.Contig5</super_contig>
        <contig_pos>34699</contig_pos>
        <strand>+</strand>
        <context>TCGAAAAAAA[G/T]TTGAGCGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTAAAGGCAATAAAAAGATGGCTGAAAAATCTAAAAATTTCGAAAAAAA</left_flank>
        <right_flank>TTGAGCGATTTCCAAGAGGCTGGCGTGTCTTTGGCGCGTTTTGAACCTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGCACGCCAGCCTTCTGTAAATTGCTATTTTTTGGTCAATTTTTGCAAAAAATTGCAGATTTTTCAACCATTTTTTCGATTTTAACCCTGAAAATTGTGTGAAAATGAAACAAAAAAGGCTGAAAAATGAGCGATTTGCAAGAGGCTGGCGTGTCTTTGGCGCGAAATTTCTCGATTTGAAGCGTTTTTGGGTCATTTTAGAGCATTTCAAATGGGATTTTTCATGATTTCGGGTGATTTTATTTAAATTTTTAAGTTTAATTAGCCAATTAAATCCACCGATAGACGTAATGCGAGTTCTCTAACCTTTTCTCTGGCCAAAAACATTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCACGCCAGTCTTGGAAATCCGATTTTTTCGAAATTTTTCAGGCATTTTTCGGAATTTGTCATATAATTAGGGAAAATGCCTTCAAAATTTTAAAGGCAATAAAAAGATGGCTGAAAAATCTAAAAATTTCGAAAAAAAATTGAGCGATTTCCAAGAGGCTGGCGTGTCTTTGGCGCGTTTTGAACCTCCTCGATTTGCAGCTTTTTTTGCTAAGCAAGACTAAACGCTATATTTCGTCTTCTAGGAGCTTCCAAATTCCCAAAATTTCAGTCTCCTCTGCCTCCCACAAAACTCCGCTGCATTTCCGGTCCATTCAACCCAAAAACCGTACTCTTTCTGGTCCAACAAGGCATCGACCTGTTCGACTCGTCATTCGCCATCAAACTGGCCGAAGAGGGTCACGCCTTCTGCCTGGCAGACGACTATCCGACGTCTTCAAAATATGAAGTCGTGGATTTCAAAGATCAAGAAAAGTTTGCCGACGATTTTACGCCGGTTTTCGATGGATGCGGCTGTTATACGTGCACGAAATACACGAAGGGCTATCTTCAACACCTTCTGAATACCAAGGAACTTCTGGCGTCGATTTTGTTGGTCATGTTAGTTTTTTTTTTTTGGAAATTTTCAAAAAATCGCGCT</canonical>
            <polymorphic>AGGCACGCCAGCCTTCTGTAAATTGCTATTTTTTGGTCAATTTTTGCAAAAAATTGCAGATTTTTCAACCATTTTTTCGATTTTAACCCTGAAAATTGTGTGAAAATGAAACAAAAAAGGCTGAAAAATGAGCGATTTGCAAGAGGCTGGCGTGTCTTTGGCGCGAAATTTCTCGATTTGAAGCGTTTTTGGGTCATTTTAGAGCATTTCAAATGGGATTTTTCATGATTTCGGGTGATTTTATTTAAATTTTTAAGTTTAATTAGCCAATTAAATCCACCGATAGACGTAATGCGAGTTCTCTAACCTTTTCTCTGGCCAAAAACATTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCACGCCAGTCTTGGAAATCCGATTTTTTCGAAATTTTTCAGGCATTTTTCGGAATTTGTCATATAATTAGGGAAAATGCCTTCAAAATTTTAAAGGCAATAAAAAGATGGCTGAAAAATCTAAAAATTTCGAAAAAAAKTTGAGCGATTTCCAAGAGGCTGGCGTGTCTTTGGCGCGTTTTGAACCTCCTCGATTTGCAGCTTTTTTTGCTAAGCAAGACTAAACGCTATATTTCGTCTTCTAGGAGCTTCCAAATTCCCAAAATTTCAGTCTCCTCTGCCTCCCACAAAACTCCGCTGCATTTCCGGTCCATTCAACCCAAAAACCGTACTCTTTCTGGTCCAACAAGGCATCGACCTGTTCGACTCGTCATTCGCCATCAAACTGGCCGAAGAGGGTCACGCCTTCTGCCTGGCAGACGACTATCCGACGTCTTCAAAATATGAAGTCGTGGATTTCAAAGATCAAGAAAAGTTTGCCGACGATTTTACGCCGGTTTTCGATGGATGCGGCTGTTATACGTGCACGAAATACACGAAGGGCTATCTTCAACACCTTCTGAATACCAAGGAACTTCTGGCGTCGATTTTGTTGGTCATGTTAGTTTTTTTTTTTTGGAAATTTTCAAAAAATCGCGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>357 116 81 73 72 52 42 39 21 21 20 20 18 13 13 13 12 9 8</canonical_bands>
                <polymorphic_bands>357 129 81 73 72 52 42 39 21 21 20 20 18 13 13 12 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCGGAATTTGTCATATAAT</pcr_primer_p1>
		<pcr_primer_p2>GAGGCAGAGGAGACTGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCGGAATTTGTCATATAATTAGGGAAAATGCCTTCAAAATTTTAAAGGCAATAAAAAGATGGCTGAAAAATCTAAAAATTTCGAAAAAAAATTGAGCGATTTCCAAGAGGCTGGCGTGTCTTTGGCGCGTTTTGAACCTCCTCGATTTGCAGCTTTTTTTGCTAAGCAAGACTAAACGCTATATTTCGTCTTCTAGGAGCTTCCAAATTCCCAAAATTTCAGTCTCCTCTGCCTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCGGAATTTGTCATATAATTAGGGAAAATGCCTTCAAAATTTTAAAGGCAATAAAAAGATGGCTGAAAAATCTAAAAATTTCGAAAAAAAKTTGAGCGATTTCCAAGAGGCTGGCGTGTCTTTGGCGCGTTTTGAACCTCCTCGATTTGCAGCTTTTTTTGCTAAGCAAGACTAAACGCTATATTTCGTCTTCTAGGAGCTTCCAAATTCCCAAAATTTCAGTCTCCTCTGCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37491</snp_id>
        <super_contig>c012400948.Contig5</super_contig>
        <contig_pos>34943</contig_pos>
        <strand></strand>
        <context>TTCGCCATCA[A/C]ACTGGCCGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTTCTGGTCCAACAAGGCATCGACCTGTTCGACTCGTCATTCGCCATCA</left_flank>
        <right_flank>ACTGGCCGAAGAGGGTCACGCCTTCTGCCTGGCAGACGACTATCCGACGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAATTTTTAAGTTTAATTAGCCAATTAAATCCACCGATAGACGTAATGCGAGTTCTCTAACCTTTTCTCTGGCCAAAAACATTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCACGCCAGTCTTGGAAATCCGATTTTTTCGAAATTTTTCAGGCATTTTTCGGAATTTGTCATATAATTAGGGAAAATGCCTTCAAAATTTTAAAGGCAATAAAAAGATGGCTGAAAAATCTAAAAATTTCGAAAAAAAATTGAGCGATTTCCAAGAGGCTGGCGTGTCTTTGGCGCGTTTTGAACCTCCTCGATTTGCAGCTTTTTTTGCTAAGCAAGACTAAACGCTATATTTCGTCTTCTAGGAGCTTCCAAATTCCCAAAATTTCAGTCTCCTCTGCCTCCCACAAAACTCCGCTGCATTTCCGGTCCATTCAACCCAAAAACCGTACTCTTTCTGGTCCAACAAGGCATCGACCTGTTCGACTCGTCATTCGCCATCAAACTGGCCGAAGAGGGTCACGCCTTCTGCCTGGCAGACGACTATCCGACGTCTTCAAAATATGAAGTCGTGGATTTCAAAGATCAAGAAAAGTTTGCCGACGATTTTACGCCGGTTTTCGATGGATGCGGCTGTTATACGTGCACGAAATACACGAAGGGCTATCTTCAACACCTTCTGAATACCAAGGAACTTCTGGCGTCGATTTTGTTGGTCATGTTAGTTTTTTTTTTTTGGAAATTTTCAAAAAATCGCGCTTAAAATTAAGACAAGAGCTGAAAATCACAAAAAAAAATGCTCGGAATTAATCCAAAAACGCTTCAATTCGAGGAATTTCAAAACGCGCCAAAGGCGTCCCTGCCTTGAAAACTCATTTTTCGGGCGTTTTTTTGGTCTTTTCAAAGGCATTTTTCACAATTTTCAAGATCAAACTCTAAAAATTCACCAAAAAACGCCCGAAAAGCTAGCAATTCCCAAGCGGCTGGCGTGCCTTTAGCGTGTT</canonical>
            <polymorphic>TTAAATTTTTAAGTTTAATTAGCCAATTAAATCCACCGATAGACGTAATGCGAGTTCTCTAACCTTTTCTCTGGCCAAAAACATTTCAAATCGAGGAATTTCAAAACGCGCCAAAGGCACGCCAGTCTTGGAAATCCGATTTTTTCGAAATTTTTCAGGCATTTTTCGGAATTTGTCATATAATTAGGGAAAATGCCTTCAAAATTTTAAAGGCAATAAAAAGATGGCTGAAAAATCTAAAAATTTCGAAAAAAAATTGAGCGATTTCCAAGAGGCTGGCGTGTCTTTGGCGCGTTTTGAACCTCCTCGATTTGCAGCTTTTTTTGCTAAGCAAGACTAAACGCTATATTTCGTCTTCTAGGAGCTTCCAAATTCCCAAAATTTCAGTCTCCTCTGCCTCCCACAAAACTCCGCTGCATTTCCGGTCCATTCAACCCAAAAACCGTACTCTTTCTGGTCCAACAAGGCATCGACCTGTTCGACTCGTCATTCGCCATCAMACTGGCCGAAGAGGGTCACGCCTTCTGCCTGGCAGACGACTATCCGACGTCTTCAAAATATGAAGTCGTGGATTTCAAAGATCAAGAAAAGTTTGCCGACGATTTTACGCCGGTTTTCGATGGATGCGGCTGTTATACGTGCACGAAATACACGAAGGGCTATCTTCAACACCTTCTGAATACCAAGGAACTTCTGGCGTCGATTTTGTTGGTCATGTTAGTTTTTTTTTTTTGGAAATTTTCAAAAAATCGCGCTTAAAATTAAGACAAGAGCTGAAAATCACAAAAAAAAATGCTCGGAATTAATCCAAAAACGCTTCAATTCGAGGAATTTCAAAACGCGCCAAAGGCGTCCCTGCCTTGAAAACTCATTTTTCGGGCGTTTTTTTGGTCTTTTCAAAGGCATTTTTCACAATTTTCAAGATCAAACTCTAAAAATTCACCAAAAAACGCCCGAAAAGCTAGCAATTCCCAAGCGGCTGGCGTGCCTTTAGCGTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACGCTATATTTCGTCTTCTAGG</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTGATCTTTGAAATCCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACGCTATATTTCGTCTTCTAGGAGCTTCCAAATTCCCAAAATTTCAGTCTCCTCTGCCTCCCACAAAACTCCGCTGCATTTCCGGTCCATTCAACCCAAAAACCGTACTCTTTCTGGTCCAACAAGGCATCGACCTGTTCGACTCGTCATTCGCCATCAAACTGGCCGAAGAGGGTCACGCCTTCTGCCTGGCAGACGACTATCCGACGTCTTCAAAATATGAAGTCGTGGATTTCAAAGATCAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>AACGCTATATTTCGTCTTCTAGGAGCTTCCAAATTCCCAAAATTTCAGTCTCCTCTGCCTCCCACAAAACTCCGCTGCATTTCCGGTCCATTCAACCCAAAAACCGTACTCTTTCTGGTCCAACAAGGCATCGACCTGTTCGACTCGTCATTCGCCATCAMACTGGCCGAAGAGGGTCACGCCTTCTGCCTGGCAGACGACTATCCGACGTCTTCAAAATATGAAGTCGTGGATTTCAAAGATCAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37492</snp_id>
        <super_contig>c012400948.Contig5</super_contig>
        <contig_pos>44961</contig_pos>
        <strand></strand>
        <context>TCTGAAAATC[A/T]GAAAATTCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATCTGAAAATAAATTCAAAACTTGGTTTTTTTTTGAAAATCTGAAAATC</left_flank>
        <right_flank>GAAAATTCTAGAAATTTCTAGGATCTGAAAATAAATTCAAAAAACACAGT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCACTTTTTTAAGATTGAAAAAAAAATGAATTTCTGGAAAATTCTAGTTTTGTGGAATCGGAAAATTTGAAAATTGAAATTCCGAGAAATTCAAGGATTCTGAAAAATCTGAAAATACCGAAAATCCGAAAAAAAAATCATTTTTTTGTAAATTTGGAACCAAGGAAGTCGGAAAATCTGAGAATCCGAAGATATCAGAGATTCTTGAAAATCTGGAATTGGGAAAATCTGAAACTCTAAAAATCGGAAAAATCTATAGAATCCGAAAATTCGAAACTTTCTAAATGTCTGAAAATCTGAAATTTCAGAAAAGTTCCGAGATTCTGACAGATCTGAAAACGAAAAATTCTAAGAAGTCTGAAAAAACTGTAAATCAGAAGTTTCTGGAATTTTCAAAATTTGGTTTTTTTTGAAAATCTGAAAATCTGAAAATTTTAGAATTTTCTAGGATCTGAAAATAAATTCAAAACTTGGTTTTTTTTTGAAAATCTGAAAATCAGAAAATTCTAGAAATTTCTAGGATCTGAAAATAAATTCAAAAAACACAGTTTTTTGATTTTTACAAAAATTTATTGAATCCAAAAAAGAGAAAAACCCATTTGAAGCGAAAAACATGAAGAATTAAGCACAGGAGATCAAAAAATCCAAAAAATCAAAAAATCCAAATTCACATGTACGTCGTGTCGTGCCTTCTGAATCCCTTCCGCTTCTCCTCCAACGCGCGGTCCATCAATTTCCTCTCTCCCATCGATTTTTCAGGCATTTCTGGAACATTCGAGAAGGTTCCCGCCTTTTTGAGATCCAAATCCGAGTTGAAGCTGTGGATTTCCATTTGAACGTGGAACATTTTGTAGTTGGAGTACGGTTGATGAGTACGGTAGAAGGAATAGATAATTGGTGTACTGTAGTTTTGTAGAGCCAAGAAAAAAGTAAGATTTTCAGCCAGAGAACTGTGTTGATAGTTTCCTCCAAACATCCCTCCCTTATATAACTCTTAGG</canonical>
            <polymorphic>TGCACTTTTTTAAGATTGAAAAAAAAATGAATTTCTGGAAAATTCTAGTTTTGTGGAATCGGAAAATTTGAAAATTGAAATTCCGAGAAATTCAAGGATTCTGAAAAATCTGAAAATACCGAAAATCCGAAAAAAAAATCATTTTTTTGTAAATTTGGAACCAAGGAAGTCGGAAAATCTGAGAATCCGAAGATATCAGAGATTCTTGAAAATCTGGAATTGGGAAAATCTGAAACTCTAAAAATCGGAAAAATCTATAGAATCCGAAAATTCGAAACTTTCTAAATGTCTGAAAATCTGAAATTTCAGAAAAGTTCCGAGATTCTGACAGATCTGAAAACGAAAAATTCTAAGAAGTCTGAAAAAACTGTAAATCAGAAGTTTCTGGAATTTTCAAAATTTGGTTTTTTTTGAAAATCTGAAAATCTGAAAATTTTAGAATTTTCTAGGATCTGAAAATAAATTCAAAACTTGGTTTTTTTTTGAAAATCTGAAAATCWGAAAATTCTAGAAATTTCTAGGATCTGAAAATAAATTCAAAAAACACAGTTTTTTGATTTTTACAAAAATTTATTGAATCCAAAAAAGAGAAAAACCCATTTGAAGCGAAAAACATGAAGAATTAAGCACAGGAGATCAAAAAATCCAAAAAATCAAAAAATCCAAATTCACATGTACGTCGTGTCGTGCCTTCTGAATCCCTTCCGCTTCTCCTCCAACGCGCGGTCCATCAATTTCCTCTCTCCCATCGATTTTTCAGGCATTTCTGGAACATTCGAGAAGGTTCCCGCCTTTTTGAGATCCAAATCCGAGTTGAAGCTGTGGATTTCCATTTGAACGTGGAACATTTTGTAGTTGGAGTACGGTTGATGAGTACGGTAGAAGGAATAGATAATTGGTGTACTGTAGTTTTGTAGAGCCAAGAAAAAAGTAAGATTTTCAGCCAGAGAACTGTGTTGATAGTTTCCTCCAAACATCCCTCCCTTATATAACTCTTAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGAAAATCTGAAAATCTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGATCTCCTGTGCTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGAAAATCTGAAAATCTGAAAATTTTAGAATTTTCTAGGATCTGAAAATAAATTCAAAACTTGGTTTTTTTTTGAAAATCTGAAAATCAGAAAATTCTAGAAATTTCTAGGATCTGAAAATAAATTCAAAAAACACAGTTTTTTGATTTTTACAAAAATTTATTGAATCCAAAAAAGAGAAAAACCCATTTGAAGCGAAAAACATGAAGAATTAAGCACAGGAGATCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGAAAATCTGAAAATCTGAAAATTTTAGAATTTTCTAGGATCTGAAAATAAATTCAAAACTTGGTTTTTTTTTGAAAATCTGAAAATCWGAAAATTCTAGAAATTTCTAGGATCTGAAAATAAATTCAAAAAACACAGTTTTTTGATTTTTACAAAAATTTATTGAATCCAAAAAAGAGAAAAACCCATTTGAAGCGAAAAACATGAAGAATTAAGCACAGGAGATCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37493</snp_id>
        <super_contig>c012400948.Contig5</super_contig>
        <contig_pos>44975</contig_pos>
        <strand></strand>
        <context>AATTCTAGAA[A/T]TTTCTAGGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCAAAACTTGGTTTTTTTTTGAAAATCTGAAAATCAGAAAATTCTAGAA</left_flank>
        <right_flank>TTTCTAGGATCTGAAAATAAATTCAAAAAACACAGTTTTTTGATTTTTAC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGAAAAAAAAATGAATTTCTGGAAAATTCTAGTTTTGTGGAATCGGAAAATTTGAAAATTGAAATTCCGAGAAATTCAAGGATTCTGAAAAATCTGAAAATACCGAAAATCCGAAAAAAAAATCATTTTTTTGTAAATTTGGAACCAAGGAAGTCGGAAAATCTGAGAATCCGAAGATATCAGAGATTCTTGAAAATCTGGAATTGGGAAAATCTGAAACTCTAAAAATCGGAAAAATCTATAGAATCCGAAAATTCGAAACTTTCTAAATGTCTGAAAATCTGAAATTTCAGAAAAGTTCCGAGATTCTGACAGATCTGAAAACGAAAAATTCTAAGAAGTCTGAAAAAACTGTAAATCAGAAGTTTCTGGAATTTTCAAAATTTGGTTTTTTTTGAAAATCTGAAAATCTGAAAATTTTAGAATTTTCTAGGATCTGAAAATAAATTCAAAACTTGGTTTTTTTTTGAAAATCTGAAAATCAGAAAATTCTAGAAATTTCTAGGATCTGAAAATAAATTCAAAAAACACAGTTTTTTGATTTTTACAAAAATTTATTGAATCCAAAAAAGAGAAAAACCCATTTGAAGCGAAAAACATGAAGAATTAAGCACAGGAGATCAAAAAATCCAAAAAATCAAAAAATCCAAATTCACATGTACGTCGTGTCGTGCCTTCTGAATCCCTTCCGCTTCTCCTCCAACGCGCGGTCCATCAATTTCCTCTCTCCCATCGATTTTTCAGGCATTTCTGGAACATTCGAGAAGGTTCCCGCCTTTTTGAGATCCAAATCCGAGTTGAAGCTGTGGATTTCCATTTGAACGTGGAACATTTTGTAGTTGGAGTACGGTTGATGAGTACGGTAGAAGGAATAGATAATTGGTGTACTGTAGTTTTGTAGAGCCAAGAAAAAAGTAAGATTTTCAGCCAGAGAACTGTGTTGATAGTTTCCTCCAAACATCCCTCCCTTATATAACTCTTAGGCCCCGCCCCTTTCT</canonical>
            <polymorphic>ATTGAAAAAAAAATGAATTTCTGGAAAATTCTAGTTTTGTGGAATCGGAAAATTTGAAAATTGAAATTCCGAGAAATTCAAGGATTCTGAAAAATCTGAAAATACCGAAAATCCGAAAAAAAAATCATTTTTTTGTAAATTTGGAACCAAGGAAGTCGGAAAATCTGAGAATCCGAAGATATCAGAGATTCTTGAAAATCTGGAATTGGGAAAATCTGAAACTCTAAAAATCGGAAAAATCTATAGAATCCGAAAATTCGAAACTTTCTAAATGTCTGAAAATCTGAAATTTCAGAAAAGTTCCGAGATTCTGACAGATCTGAAAACGAAAAATTCTAAGAAGTCTGAAAAAACTGTAAATCAGAAGTTTCTGGAATTTTCAAAATTTGGTTTTTTTTGAAAATCTGAAAATCTGAAAATTTTAGAATTTTCTAGGATCTGAAAATAAATTCAAAACTTGGTTTTTTTTTGAAAATCTGAAAATCAGAAAATTCTAGAAWTTTCTAGGATCTGAAAATAAATTCAAAAAACACAGTTTTTTGATTTTTACAAAAATTTATTGAATCCAAAAAAGAGAAAAACCCATTTGAAGCGAAAAACATGAAGAATTAAGCACAGGAGATCAAAAAATCCAAAAAATCAAAAAATCCAAATTCACATGTACGTCGTGTCGTGCCTTCTGAATCCCTTCCGCTTCTCCTCCAACGCGCGGTCCATCAATTTCCTCTCTCCCATCGATTTTTCAGGCATTTCTGGAACATTCGAGAAGGTTCCCGCCTTTTTGAGATCCAAATCCGAGTTGAAGCTGTGGATTTCCATTTGAACGTGGAACATTTTGTAGTTGGAGTACGGTTGATGAGTACGGTAGAAGGAATAGATAATTGGTGTACTGTAGTTTTGTAGAGCCAAGAAAAAAGTAAGATTTTCAGCCAGAGAACTGTGTTGATAGTTTCCTCCAAACATCCCTCCCTTATATAACTCTTAGGCCCCGCCCCTTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>349 117 98 63 44 43 42 34 34 33 24 22 21 15 14 11 10 9 9 8</canonical_bands>
                <polymorphic_bands>349 117 98 63 44 43 42 34 34 33 30 24 22 15 14 11 10 9 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>161 121 67 66 63 53 51 45 44 43 42 34 34 33 24 22 21 15 11 10 9 9 8 8 6</canonical_bands>
                <polymorphic_bands>161 121 67 66 63 53 51 45 44 43 42 34 34 33 30 24 22 15 11 10 9 8 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGAAAATCTGAAAATCTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGATCTCCTGTGCTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGAAAATCTGAAAATCTGAAAATTTTAGAATTTTCTAGGATCTGAAAATAAATTCAAAACTTGGTTTTTTTTTGAAAATCTGAAAATCAGAAAATTCTAGAAATTTCTAGGATCTGAAAATAAATTCAAAAAACACAGTTTTTTGATTTTTACAAAAATTTATTGAATCCAAAAAAGAGAAAAACCCATTTGAAGCGAAAAACATGAAGAATTAAGCACAGGAGATCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGAAAATCTGAAAATCTGAAAATTTTAGAATTTTCTAGGATCTGAAAATAAATTCAAAACTTGGTTTTTTTTTGAAAATCTGAAAATCAGAAAATTCTAGAAWTTTCTAGGATCTGAAAATAAATTCAAAAAACACAGTTTTTTGATTTTTACAAAAATTTATTGAATCCAAAAAAGAGAAAAACCCATTTGAAGCGAAAAACATGAAGAATTAAGCACAGGAGATCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37494</snp_id>
        <super_contig>c012400948.Contig5</super_contig>
        <contig_pos>45119</contig_pos>
        <strand></strand>
        <context>AAAAAATCAA[A/T]AAATCCAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAAACATGAAGAATTAAGCACAGGAGATCAAAAAATCCAAAAAATCAA</left_flank>
        <right_flank>AAATCCAAATTCACATGTACGTCGTGTCGTGCCTTCTGAATCCCTTCCGC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCAAGGAAGTCGGAAAATCTGAGAATCCGAAGATATCAGAGATTCTTGAAAATCTGGAATTGGGAAAATCTGAAACTCTAAAAATCGGAAAAATCTATAGAATCCGAAAATTCGAAACTTTCTAAATGTCTGAAAATCTGAAATTTCAGAAAAGTTCCGAGATTCTGACAGATCTGAAAACGAAAAATTCTAAGAAGTCTGAAAAAACTGTAAATCAGAAGTTTCTGGAATTTTCAAAATTTGGTTTTTTTTGAAAATCTGAAAATCTGAAAATTTTAGAATTTTCTAGGATCTGAAAATAAATTCAAAACTTGGTTTTTTTTTGAAAATCTGAAAATCAGAAAATTCTAGAAATTTCTAGGATCTGAAAATAAATTCAAAAAACACAGTTTTTTGATTTTTACAAAAATTTATTGAATCCAAAAAAGAGAAAAACCCATTTGAAGCGAAAAACATGAAGAATTAAGCACAGGAGATCAAAAAATCCAAAAAATCAAAAAATCCAAATTCACATGTACGTCGTGTCGTGCCTTCTGAATCCCTTCCGCTTCTCCTCCAACGCGCGGTCCATCAATTTCCTCTCTCCCATCGATTTTTCAGGCATTTCTGGAACATTCGAGAAGGTTCCCGCCTTTTTGAGATCCAAATCCGAGTTGAAGCTGTGGATTTCCATTTGAACGTGGAACATTTTGTAGTTGGAGTACGGTTGATGAGTACGGTAGAAGGAATAGATAATTGGTGTACTGTAGTTTTGTAGAGCCAAGAAAAAAGTAAGATTTTCAGCCAGAGAACTGTGTTGATAGTTTCCTCCAAACATCCCTCCCTTATATAACTCTTAGGCCCCGCCCCTTTCTCCTAAGCCCCGCCCCTTTTTTCTCTGGCTTCGGCGAAATTTCAGATCTCTGCTTGGATTTCTGGAATTTTCAGATTCTCTCAATTCTCCACTTCCCAGGTTTTCAGAATTCCGATATTTCTGAATTTCAGAATGTCACCAATTT</canonical>
            <polymorphic>AACCAAGGAAGTCGGAAAATCTGAGAATCCGAAGATATCAGAGATTCTTGAAAATCTGGAATTGGGAAAATCTGAAACTCTAAAAATCGGAAAAATCTATAGAATCCGAAAATTCGAAACTTTCTAAATGTCTGAAAATCTGAAATTTCAGAAAAGTTCCGAGATTCTGACAGATCTGAAAACGAAAAATTCTAAGAAGTCTGAAAAAACTGTAAATCAGAAGTTTCTGGAATTTTCAAAATTTGGTTTTTTTTGAAAATCTGAAAATCTGAAAATTTTAGAATTTTCTAGGATCTGAAAATAAATTCAAAACTTGGTTTTTTTTTGAAAATCTGAAAATCAGAAAATTCTAGAAATTTCTAGGATCTGAAAATAAATTCAAAAAACACAGTTTTTTGATTTTTACAAAAATTTATTGAATCCAAAAAAGAGAAAAACCCATTTGAAGCGAAAAACATGAAGAATTAAGCACAGGAGATCAAAAAATCCAAAAAATCAAWAAATCCAAATTCACATGTACGTCGTGTCGTGCCTTCTGAATCCCTTCCGCTTCTCCTCCAACGCGCGGTCCATCAATTTCCTCTCTCCCATCGATTTTTCAGGCATTTCTGGAACATTCGAGAAGGTTCCCGCCTTTTTGAGATCCAAATCCGAGTTGAAGCTGTGGATTTCCATTTGAACGTGGAACATTTTGTAGTTGGAGTACGGTTGATGAGTACGGTAGAAGGAATAGATAATTGGTGTACTGTAGTTTTGTAGAGCCAAGAAAAAAGTAAGATTTTCAGCCAGAGAACTGTGTTGATAGTTTCCTCCAAACATCCCTCCCTTATATAACTCTTAGGCCCCGCCCCTTTCTCCTAAGCCCCGCCCCTTTTTTCTCTGGCTTCGGCGAAATTTCAGATCTCTGCTTGGATTTCTGGAATTTTCAGATTCTCTCAATTCTCCACTTCCCAGGTTTTCAGAATTCCGATATTTCTGAATTTCAGAATGTCACCAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGAAAAACATGAAGAATTAAG</pcr_primer_p1>
		<pcr_primer_p2>CTACAAAATGTTCCACGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCGAAAAACATGAAGAATTAAGCACAGGAGATCAAAAAATCCAAAAAATCAAAAAATCCAAATTCACATGTACGTCGTGTCGTGCCTTCTGAATCCCTTCCGCTTCTCCTCCAACGCGCGGTCCATCAATTTCCTCTCTCCCATCGATTTTTCAGGCATTTCTGGAACATTCGAGAAGGTTCCCGCCTTTTTGAGATCCAAATCCGAGTTGAAGCTGTGGATTTCCATTTGAACGTGGAACATTTTGTAG</canonical_amplicon>
		<polymorphic_amplicon>GCGAAAAACATGAAGAATTAAGCACAGGAGATCAAAAAATCCAAAAAATCAAWAAATCCAAATTCACATGTACGTCGTGTCGTGCCTTCTGAATCCCTTCCGCTTCTCCTCCAACGCGCGGTCCATCAATTTCCTCTCTCCCATCGATTTTTCAGGCATTTCTGGAACATTCGAGAAGGTTCCCGCCTTTTTGAGATCCAAATCCGAGTTGAAGCTGTGGATTTCCATTTGAACGTGGAACATTTTGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37495</snp_id>
        <super_contig>c012400948.Contig5</super_contig>
        <contig_pos>45166</contig_pos>
        <strand></strand>
        <context>TGAATCCCTT[C/G]CGCTTCTCCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAAAAAATCCAAATTCACATGTACGTCGTGTCGTGCCTTCTGAATCCCTT</left_flank>
        <right_flank>CGCTTCTCCTCCAACGCGCGGTCCATCAATTTCCTCTCTCCCATCGATTT</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAAAATCTGGAATTGGGAAAATCTGAAACTCTAAAAATCGGAAAAATCTATAGAATCCGAAAATTCGAAACTTTCTAAATGTCTGAAAATCTGAAATTTCAGAAAAGTTCCGAGATTCTGACAGATCTGAAAACGAAAAATTCTAAGAAGTCTGAAAAAACTGTAAATCAGAAGTTTCTGGAATTTTCAAAATTTGGTTTTTTTTGAAAATCTGAAAATCTGAAAATTTTAGAATTTTCTAGGATCTGAAAATAAATTCAAAACTTGGTTTTTTTTTGAAAATCTGAAAATCAGAAAATTCTAGAAATTTCTAGGATCTGAAAATAAATTCAAAAAACACAGTTTTTTGATTTTTACAAAAATTTATTGAATCCAAAAAAGAGAAAAACCCATTTGAAGCGAAAAACATGAAGAATTAAGCACAGGAGATCAAAAAATCCAAAAAATCAAAAAATCCAAATTCACATGTACGTCGTGTCGTGCCTTCTGAATCCCTTCCGCTTCTCCTCCAACGCGCGGTCCATCAATTTCCTCTCTCCCATCGATTTTTCAGGCATTTCTGGAACATTCGAGAAGGTTCCCGCCTTTTTGAGATCCAAATCCGAGTTGAAGCTGTGGATTTCCATTTGAACGTGGAACATTTTGTAGTTGGAGTACGGTTGATGAGTACGGTAGAAGGAATAGATAATTGGTGTACTGTAGTTTTGTAGAGCCAAGAAAAAAGTAAGATTTTCAGCCAGAGAACTGTGTTGATAGTTTCCTCCAAACATCCCTCCCTTATATAACTCTTAGGCCCCGCCCCTTTCTCCTAAGCCCCGCCCCTTTTTTCTCTGGCTTCGGCGAAATTTCAGATCTCTGCTTGGATTTCTGGAATTTTCAGATTCTCTCAATTCTCCACTTCCCAGGTTTTCAGAATTCCGATATTTCTGAATTTCAGAATGTCACCAATTTCCGCGGTTCAAAGTTTTTCAAAAGTCAAGTTTTCAGAATTTCAGGTT</canonical>
            <polymorphic>TTGAAAATCTGGAATTGGGAAAATCTGAAACTCTAAAAATCGGAAAAATCTATAGAATCCGAAAATTCGAAACTTTCTAAATGTCTGAAAATCTGAAATTTCAGAAAAGTTCCGAGATTCTGACAGATCTGAAAACGAAAAATTCTAAGAAGTCTGAAAAAACTGTAAATCAGAAGTTTCTGGAATTTTCAAAATTTGGTTTTTTTTGAAAATCTGAAAATCTGAAAATTTTAGAATTTTCTAGGATCTGAAAATAAATTCAAAACTTGGTTTTTTTTTGAAAATCTGAAAATCAGAAAATTCTAGAAATTTCTAGGATCTGAAAATAAATTCAAAAAACACAGTTTTTTGATTTTTACAAAAATTTATTGAATCCAAAAAAGAGAAAAACCCATTTGAAGCGAAAAACATGAAGAATTAAGCACAGGAGATCAAAAAATCCAAAAAATCAAAAAATCCAAATTCACATGTACGTCGTGTCGTGCCTTCTGAATCCCTTSCGCTTCTCCTCCAACGCGCGGTCCATCAATTTCCTCTCTCCCATCGATTTTTCAGGCATTTCTGGAACATTCGAGAAGGTTCCCGCCTTTTTGAGATCCAAATCCGAGTTGAAGCTGTGGATTTCCATTTGAACGTGGAACATTTTGTAGTTGGAGTACGGTTGATGAGTACGGTAGAAGGAATAGATAATTGGTGTACTGTAGTTTTGTAGAGCCAAGAAAAAAGTAAGATTTTCAGCCAGAGAACTGTGTTGATAGTTTCCTCCAAACATCCCTCCCTTATATAACTCTTAGGCCCCGCCCCTTTCTCCTAAGCCCCGCCCCTTTTTTCTCTGGCTTCGGCGAAATTTCAGATCTCTGCTTGGATTTCTGGAATTTTCAGATTCTCTCAATTCTCCACTTCCCAGGTTTTCAGAATTCCGATATTTCTGAATTTCAGAATGTCACCAATTTCCGCGGTTCAAAGTTTTTCAAAAGTCAAGTTTTCAGAATTTCAGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>500 215 136 83 46 20</canonical_bands>
                <polymorphic_bands>583 215 136 46 20</polymorphic_bands>
            </assay>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAAGAATTAAGCACAGGAGAT</pcr_primer_p1>
		<pcr_primer_p2>GTACTCCAACTACAAAATGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGAAGAATTAAGCACAGGAGATCAAAAAATCCAAAAAATCAAAAAATCCAAATTCACATGTACGTCGTGTCGTGCCTTCTGAATCCCTTCCGCTTCTCCTCCAACGCGCGGTCCATCAATTTCCTCTCTCCCATCGATTTTTCAGGCATTTCTGGAACATTCGAGAAGGTTCCCGCCTTTTTGAGATCCAAATCCGAGTTGAAGCTGTGGATTTCCATTTGAACGTGGAACATTTTGTAGTTGGAGTAC</canonical_amplicon>
		<polymorphic_amplicon>ATGAAGAATTAAGCACAGGAGATCAAAAAATCCAAAAAATCAAAAAATCCAAATTCACATGTACGTCGTGTCGTGCCTTCTGAATCCCTTSCGCTTCTCCTCCAACGCGCGGTCCATCAATTTCCTCTCTCCCATCGATTTTTCAGGCATTTCTGGAACATTCGAGAAGGTTCCCGCCTTTTTGAGATCCAAATCCGAGTTGAAGCTGTGGATTTCCATTTGAACGTGGAACATTTTGTAGTTGGAGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37496</snp_id>
        <super_contig>c012400948.Contig5</super_contig>
        <contig_pos>45741</contig_pos>
        <strand></strand>
        <context>AAATCGAAAA[A/G]ATTTTTAGRA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATAAAAAAAAACATTTTGTTGATCCGAAAAAAATCTAGAAAATCGAAAA</left_flank>
        <right_flank>ATTTTTAGAATTCCAGAAATTAAGAGCTTCAGAATTTCAGAACTTCAACG</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGGTTCCCGCCTTTTTGAGATCCAAATCCGAGTTGAAGCTGTGGATTTCCATTTGAACGTGGAACATTTTGTAGTTGGAGTACGGTTGATGAGTACGGTAGAAGGAATAGATAATTGGTGTACTGTAGTTTTGTAGAGCCAAGAAAAAAGTAAGATTTTCAGCCAGAGAACTGTGTTGATAGTTTCCTCCAAACATCCCTCCCTTATATAACTCTTAGGCCCCGCCCCTTTCTCCTAAGCCCCGCCCCTTTTTTCTCTGGCTTCGGCGAAATTTCAGATCTCTGCTTGGATTTCTGGAATTTTCAGATTCTCTCAATTCTCCACTTCCCAGGTTTTCAGAATTCCGATATTTCTGAATTTCAGAATGTCACCAATTTCCGCGGTTCAAAGTTTTTCAAAAGTCAAGTTTTCAGAATTTCAGGTTTTTCAGATTCTCAAATTTCACAAAAATAAAAAAAAACATTTTGTTGATCCGAAAAAAATCTAGAAAATCGAAAAAATTTTTAGAATTCCAGAAATTAAGAGCTTCAGAATTTCAGAACTTCAACGTTTCCCAAATTTCCAATTCTCACGATTCTTAGTTTTTCAGAATTCCTGATTTTCACAAGTTTCCAAACTTTTCACGCGTCCGATTTTTAGAATTCCAGCTTTTTCCAAATTTCCAATTATCCTTATTCCACGTTTTCAGAATTTCAGATTTTCACAAGTTTCCAAATATTTTCATGATCCCAAGTTATTCAGAAGTCCCATTTTCAGAATTTCAGATTTTCAGATTTTTCCAAATTTCCAATTATCCTGATACCACGTTTTTCAGAATTTCAGTATTTCAGGTTTTTGAGATTTTCAGATTTTTCAGATTAGAATTCTCCTGATTTCAGGGTTTTCAGAAGTAGAATTGCAGAATTTCGGAACTTTAGACTTTCCCAAATTTTTTGTTCTTATAGTTCCAACTTTTTCGAAAGACCAATTTTAATACAATTTTCAGATTCTCAATTTTCT</canonical>
            <polymorphic>AAGGTTCCCGCCTTTTTGAGATCCAAATCCGAGTTGAAGCTGTGGATTTCCATTTGAACGTGGAACATTTTGTAGTTGGAGTACGGTTGATGAGTACGGTAGAAGGAATAGATAATTGGTGTACTGTAGTTTTGTAGAGCCAAGAAAAAAGTAAGATTTTCAGCCAGAGAACTGTGTTGATAGTTTCCTCCAAACATCCCTCCCTTATATAACTCTTAGGCCCCGCCCCTTTCTCCTAAGCCCCGCCCCTTTTTTCTCTGGCTTCGGCGAAATTTCAGATCTCTGCTTGGATTTCTGGAATTTTCAGATTCTCTCAATTCTCCACTTCCCAGGTTTTCAGAATTCCGATATTTCTGAATTTCAGAATGTCACCAATTTCCGCGGTTCAAAGTTTTTCAAAAGTCAAGTTTTCAGAATTTCAGGTTTTTCAGATTCTCAAATTTCACAAAAATAAAAAAAAACATTTTGTTGATCCGAAAAAAATCTAGAAAATCGAAAARATTTTTAGAATTCCAGAAATTAAGAGCTTCAGAATTTCAGAACTTCAACGTTTCCCAAATTTCCAATTCTCACGATTCTTAGTTTTTCAGAATTCCTGATTTTCACAAGTTTCCAAACTTTTCACGCGTCCGATTTTTAGAATTCCAGCTTTTTCCAAATTTCCAATTATCCTTATTCCACGTTTTCAGAATTTCAGATTTTCACAAGTTTCCAAATATTTTCATGATCCCAAGTTATTCAGAAGTCCCATTTTCAGAATTTCAGATTTTCAGATTTTTCCAAATTTCCAATTATCCTGATACCACGTTTTTCAGAATTTCAGTATTTCAGGTTTTTGAGATTTTCAGATTTTTCAGATTAGAATTCTCCTGATTTCAGGGTTTTCAGAAGTAGAATTGCAGAATTTCGGAACTTTAGACTTTCCCAAATTTTTTGTTCTTATAGTTCCAACTTTTTCGAAAGACCAATTTTAATACAATTTTCAGATTCTCAATTTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>270 73 68 61 58 50 47 42 40 33 33 32 28 25 25 25 24 24 17 16 9</canonical_bands>
                <polymorphic_bands>270 73 70 68 58 50 47 42 40 33 33 32 28 25 25 25 24 24 17 16</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>157 113 68 61 50 47 41 39 32 28 26 26 25 25 25 25 25 24 17 17 17 16 15 15 11 9 9 8 8 7 7 7</canonical_bands>
                <polymorphic_bands>157 113 70 68 50 47 41 39 32 28 26 26 25 25 25 25 25 24 17 17 17 16 15 15 11 9 8 8 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCTCCCTTATATAACTCTTAGG</pcr_primer_p1>
		<pcr_primer_p2>AATTTGGGAAACGTTGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>364</pcr_amplicon_size>
		<canonical_amplicon>CCCTCCCTTATATAACTCTTAGGCCCCGCCCCTTTCTCCTAAGCCCCGCCCCTTTTTTCTCTGGCTTCGGCGAAATTTCAGATCTCTGCTTGGATTTCTGGAATTTTCAGATTCTCTCAATTCTCCACTTCCCAGGTTTTCAGAATTCCGATATTTCTGAATTTCAGAATGTCACCAATTTCCGCGGTTCAAAGTTTTTCAAAAGTCAAGTTTTCAGAATTTCAGGTTTTTCAGATTCTCAAATTTCACAAAAATAAAAAAAAACATTTTGTTGATCCGAAAAAAATCTAGAAAATCGAAAAAATTTTTAGAATTCCAGAAATTAAGAGCTTCAGAATTTCAGAACTTCAACGTTTCCCAAATT</canonical_amplicon>
		<polymorphic_amplicon>CCCTCCCTTATATAACTCTTAGGCCCCGCCCCTTTCTCCTAAGCCCCGCCCCTTTTTTCTCTGGCTTCGGCGAAATTTCAGATCTCTGCTTGGATTTCTGGAATTTTCAGATTCTCTCAATTCTCCACTTCCCAGGTTTTCAGAATTCCGATATTTCTGAATTTCAGAATGTCACCAATTTCCGCGGTTCAAAGTTTTTCAAAAGTCAAGTTTTCAGAATTTCAGGTTTTTCAGATTCTCAAATTTCACAAAAATAAAAAAAAACATTTTGTTGATCCGAAAAAAATCTAGAAAATCGAAAARATTTTTAGAATTCCAGAAATTAAGAGCTTCAGAATTTCAGAACTTCAACGTTTCCCAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37497</snp_id>
        <super_contig>c012400948.Contig5</super_contig>
        <contig_pos>45750</contig_pos>
        <strand></strand>
        <context>ARATTTTTAG[A/G]ATTCCAGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACATTTTGTTGATCCGAAAAAAATCTAGAAAATCGAAAAAATTTTTAG</left_flank>
        <right_flank>ATTCCAGAAATTAAGAGCTTCAGAATTTCAGAACTTCAACGTTTCCCAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCTTTTTGAGATCCAAATCCGAGTTGAAGCTGTGGATTTCCATTTGAACGTGGAACATTTTGTAGTTGGAGTACGGTTGATGAGTACGGTAGAAGGAATAGATAATTGGTGTACTGTAGTTTTGTAGAGCCAAGAAAAAAGTAAGATTTTCAGCCAGAGAACTGTGTTGATAGTTTCCTCCAAACATCCCTCCCTTATATAACTCTTAGGCCCCGCCCCTTTCTCCTAAGCCCCGCCCCTTTTTTCTCTGGCTTCGGCGAAATTTCAGATCTCTGCTTGGATTTCTGGAATTTTCAGATTCTCTCAATTCTCCACTTCCCAGGTTTTCAGAATTCCGATATTTCTGAATTTCAGAATGTCACCAATTTCCGCGGTTCAAAGTTTTTCAAAAGTCAAGTTTTCAGAATTTCAGGTTTTTCAGATTCTCAAATTTCACAAAAATAAAAAAAAACATTTTGTTGATCCGAAAAAAATCTAGAAAATCGAAAAAATTTTTAGAATTCCAGAAATTAAGAGCTTCAGAATTTCAGAACTTCAACGTTTCCCAAATTTCCAATTCTCACGATTCTTAGTTTTTCAGAATTCCTGATTTTCACAAGTTTCCAAACTTTTCACGCGTCCGATTTTTAGAATTCCAGCTTTTTCCAAATTTCCAATTATCCTTATTCCACGTTTTCAGAATTTCAGATTTTCACAAGTTTCCAAATATTTTCATGATCCCAAGTTATTCAGAAGTCCCATTTTCAGAATTTCAGATTTTCAGATTTTTCCAAATTTCCAATTATCCTGATACCACGTTTTTCAGAATTTCAGTATTTCAGGTTTTTGAGATTTTCAGATTTTTCAGATTAGAATTCTCCTGATTTCAGGGTTTTCAGAAGTAGAATTGCAGAATTTCGGAACTTTAGACTTTCCCAAATTTTTTGTTCTTATAGTTCCAACTTTTTCGAAAGACCAATTTTAATACAATTTTCAGATTCTCAATTTTCTCAAAAAACA</canonical>
            <polymorphic>GCCTTTTTGAGATCCAAATCCGAGTTGAAGCTGTGGATTTCCATTTGAACGTGGAACATTTTGTAGTTGGAGTACGGTTGATGAGTACGGTAGAAGGAATAGATAATTGGTGTACTGTAGTTTTGTAGAGCCAAGAAAAAAGTAAGATTTTCAGCCAGAGAACTGTGTTGATAGTTTCCTCCAAACATCCCTCCCTTATATAACTCTTAGGCCCCGCCCCTTTCTCCTAAGCCCCGCCCCTTTTTTCTCTGGCTTCGGCGAAATTTCAGATCTCTGCTTGGATTTCTGGAATTTTCAGATTCTCTCAATTCTCCACTTCCCAGGTTTTCAGAATTCCGATATTTCTGAATTTCAGAATGTCACCAATTTCCGCGGTTCAAAGTTTTTCAAAAGTCAAGTTTTCAGAATTTCAGGTTTTTCAGATTCTCAAATTTCACAAAAATAAAAAAAAACATTTTGTTGATCCGAAAAAAATCTAGAAAATCGAAAAAATTTTTAGRATTCCAGAAATTAAGAGCTTCAGAATTTCAGAACTTCAACGTTTCCCAAATTTCCAATTCTCACGATTCTTAGTTTTTCAGAATTCCTGATTTTCACAAGTTTCCAAACTTTTCACGCGTCCGATTTTTAGAATTCCAGCTTTTTCCAAATTTCCAATTATCCTTATTCCACGTTTTCAGAATTTCAGATTTTCACAAGTTTCCAAATATTTTCATGATCCCAAGTTATTCAGAAGTCCCATTTTCAGAATTTCAGATTTTCAGATTTTTCCAAATTTCCAATTATCCTGATACCACGTTTTTCAGAATTTCAGTATTTCAGGTTTTTGAGATTTTCAGATTTTTCAGATTAGAATTCTCCTGATTTCAGGGTTTTCAGAAGTAGAATTGCAGAATTTCGGAACTTTAGACTTTCCCAAATTTTTTGTTCTTATAGTTCCAACTTTTTCGAAAGACCAATTTTAATACAATTTTCAGATTCTCAATTTTCTCAAAAAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>261 82 68 61 58 50 47 42 40 33 33 32 28 25 25 25 24 24 17 16 9</canonical_bands>
                <polymorphic_bands>261 82 68 61 58 50 47 42 40 33 33 33 32 28 25 25 25 24 17 16</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>331 222 168 147 82 50</canonical_bands>
                <polymorphic_bands>331 250 222 147 50</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>157 104 68 61 50 47 41 39 32 28 26 26 25 25 25 25 25 24 17 17 17 17 16 15 15 11 9 9 8 7 7 7</canonical_bands>
                <polymorphic_bands>157 104 68 61 50 47 41 39 32 28 26 26 25 25 25 25 25 24 18 17 17 17 17 16 15 15 11 8 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCTCCCTTATATAACTCTTAGG</pcr_primer_p1>
		<pcr_primer_p2>AATTTGGGAAACGTTGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>364</pcr_amplicon_size>
		<canonical_amplicon>CCCTCCCTTATATAACTCTTAGGCCCCGCCCCTTTCTCCTAAGCCCCGCCCCTTTTTTCTCTGGCTTCGGCGAAATTTCAGATCTCTGCTTGGATTTCTGGAATTTTCAGATTCTCTCAATTCTCCACTTCCCAGGTTTTCAGAATTCCGATATTTCTGAATTTCAGAATGTCACCAATTTCCGCGGTTCAAAGTTTTTCAAAAGTCAAGTTTTCAGAATTTCAGGTTTTTCAGATTCTCAAATTTCACAAAAATAAAAAAAAACATTTTGTTGATCCGAAAAAAATCTAGAAAATCGAAAAAATTTTTAGAATTCCAGAAATTAAGAGCTTCAGAATTTCAGAACTTCAACGTTTCCCAAATT</canonical_amplicon>
		<polymorphic_amplicon>CCCTCCCTTATATAACTCTTAGGCCCCGCCCCTTTCTCCTAAGCCCCGCCCCTTTTTTCTCTGGCTTCGGCGAAATTTCAGATCTCTGCTTGGATTTCTGGAATTTTCAGATTCTCTCAATTCTCCACTTCCCAGGTTTTCAGAATTCCGATATTTCTGAATTTCAGAATGTCACCAATTTCCGCGGTTCAAAGTTTTTCAAAAGTCAAGTTTTCAGAATTTCAGGTTTTTCAGATTCTCAAATTTCACAAAAATAAAAAAAAACATTTTGTTGATCCGAAAAAAATCTAGAAAATCGAAAAAATTTTTAGRATTCCAGAAATTAAGAGCTTCAGAATTTCAGAACTTCAACGTTTCCCAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37498</snp_id>
        <super_contig>c012400948.Contig5</super_contig>
        <contig_pos>45766</contig_pos>
        <strand></strand>
        <context>AGAAATTAAG[A/G]GCTTCAGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAAAAAAATCTAGAAAATCGAAAAAATTTTTAGAATTCCAGAAATTAAG</left_flank>
        <right_flank>GCTTCAGAATTTCAGAACTTCAACGTTTCCCAAATTTCCAATTCTCACGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCCGAGTTGAAGCTGTGGATTTCCATTTGAACGTGGAACATTTTGTAGTTGGAGTACGGTTGATGAGTACGGTAGAAGGAATAGATAATTGGTGTACTGTAGTTTTGTAGAGCCAAGAAAAAAGTAAGATTTTCAGCCAGAGAACTGTGTTGATAGTTTCCTCCAAACATCCCTCCCTTATATAACTCTTAGGCCCCGCCCCTTTCTCCTAAGCCCCGCCCCTTTTTTCTCTGGCTTCGGCGAAATTTCAGATCTCTGCTTGGATTTCTGGAATTTTCAGATTCTCTCAATTCTCCACTTCCCAGGTTTTCAGAATTCCGATATTTCTGAATTTCAGAATGTCACCAATTTCCGCGGTTCAAAGTTTTTCAAAAGTCAAGTTTTCAGAATTTCAGGTTTTTCAGATTCTCAAATTTCACAAAAATAAAAAAAAACATTTTGTTGATCCGAAAAAAATCTAGAAAATCGAAAAAATTTTTAGAATTCCAGAAATTAAGAGCTTCAGAATTTCAGAACTTCAACGTTTCCCAAATTTCCAATTCTCACGATTCTTAGTTTTTCAGAATTCCTGATTTTCACAAGTTTCCAAACTTTTCACGCGTCCGATTTTTAGAATTCCAGCTTTTTCCAAATTTCCAATTATCCTTATTCCACGTTTTCAGAATTTCAGATTTTCACAAGTTTCCAAATATTTTCATGATCCCAAGTTATTCAGAAGTCCCATTTTCAGAATTTCAGATTTTCAGATTTTTCCAAATTTCCAATTATCCTGATACCACGTTTTTCAGAATTTCAGTATTTCAGGTTTTTGAGATTTTCAGATTTTTCAGATTAGAATTCTCCTGATTTCAGGGTTTTCAGAAGTAGAATTGCAGAATTTCGGAACTTTAGACTTTCCCAAATTTTTTGTTCTTATAGTTCCAACTTTTTCGAAAGACCAATTTTAATACAATTTTCAGATTCTCAATTTTCTCAAAAAACAAAAAAAACATTTTGTT</canonical>
            <polymorphic>AATCCGAGTTGAAGCTGTGGATTTCCATTTGAACGTGGAACATTTTGTAGTTGGAGTACGGTTGATGAGTACGGTAGAAGGAATAGATAATTGGTGTACTGTAGTTTTGTAGAGCCAAGAAAAAAGTAAGATTTTCAGCCAGAGAACTGTGTTGATAGTTTCCTCCAAACATCCCTCCCTTATATAACTCTTAGGCCCCGCCCCTTTCTCCTAAGCCCCGCCCCTTTTTTCTCTGGCTTCGGCGAAATTTCAGATCTCTGCTTGGATTTCTGGAATTTTCAGATTCTCTCAATTCTCCACTTCCCAGGTTTTCAGAATTCCGATATTTCTGAATTTCAGAATGTCACCAATTTCCGCGGTTCAAAGTTTTTCAAAAGTCAAGTTTTCAGAATTTCAGGTTTTTCAGATTCTCAAATTTCACAAAAATAAAAAAAAACATTTTGTTGATCCGAAAAAAATCTAGAAAATCGAAAAAATTTTTAGAATTCCAGAAATTAAGRGCTTCAGAATTTCAGAACTTCAACGTTTCCCAAATTTCCAATTCTCACGATTCTTAGTTTTTCAGAATTCCTGATTTTCACAAGTTTCCAAACTTTTCACGCGTCCGATTTTTAGAATTCCAGCTTTTTCCAAATTTCCAATTATCCTTATTCCACGTTTTCAGAATTTCAGATTTTCACAAGTTTCCAAATATTTTCATGATCCCAAGTTATTCAGAAGTCCCATTTTCAGAATTTCAGATTTTCAGATTTTTCCAAATTTCCAATTATCCTGATACCACGTTTTTCAGAATTTCAGTATTTCAGGTTTTTGAGATTTTCAGATTTTTCAGATTAGAATTCTCCTGATTTCAGGGTTTTCAGAAGTAGAATTGCAGAATTTCGGAACTTTAGACTTTCCCAAATTTTTTGTTCTTATAGTTCCAACTTTTTCGAAAGACCAATTTTAATACAATTTTCAGATTCTCAATTTTCTCAAAAAACAAAAAAAACATTTTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>487 377 122 14</canonical_bands>
                <polymorphic_bands>609 377 14</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>377 265 122 100 57 24 21 20 14</canonical_bands>
                <polymorphic_bands>387 377 100 57 24 21 20 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCTCCCTTATATAACTCTTAGG</pcr_primer_p1>
		<pcr_primer_p2>AGAATCGTGAGAATTGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>382</pcr_amplicon_size>
		<canonical_amplicon>CCCTCCCTTATATAACTCTTAGGCCCCGCCCCTTTCTCCTAAGCCCCGCCCCTTTTTTCTCTGGCTTCGGCGAAATTTCAGATCTCTGCTTGGATTTCTGGAATTTTCAGATTCTCTCAATTCTCCACTTCCCAGGTTTTCAGAATTCCGATATTTCTGAATTTCAGAATGTCACCAATTTCCGCGGTTCAAAGTTTTTCAAAAGTCAAGTTTTCAGAATTTCAGGTTTTTCAGATTCTCAAATTTCACAAAAATAAAAAAAAACATTTTGTTGATCCGAAAAAAATCTAGAAAATCGAAAAAATTTTTAGAATTCCAGAAATTAAGAGCTTCAGAATTTCAGAACTTCAACGTTTCCCAAATTTCCAATTCTCACGATTCT</canonical_amplicon>
		<polymorphic_amplicon>CCCTCCCTTATATAACTCTTAGGCCCCGCCCCTTTCTCCTAAGCCCCGCCCCTTTTTTCTCTGGCTTCGGCGAAATTTCAGATCTCTGCTTGGATTTCTGGAATTTTCAGATTCTCTCAATTCTCCACTTCCCAGGTTTTCAGAATTCCGATATTTCTGAATTTCAGAATGTCACCAATTTCCGCGGTTCAAAGTTTTTCAAAAGTCAAGTTTTCAGAATTTCAGGTTTTTCAGATTCTCAAATTTCACAAAAATAAAAAAAAACATTTTGTTGATCCGAAAAAAATCTAGAAAATCGAAAAAATTTTTAGAATTCCAGAAATTAAGRGCTTCAGAATTTCAGAACTTCAACGTTTCCCAAATTTCCAATTCTCACGATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37499</snp_id>
        <super_contig>c012400948.Contig5</super_contig>
        <contig_pos>46038</contig_pos>
        <strand></strand>
        <context>tccaattatc[C/A]tgataccacg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CCCATTTTCAGAATTTCAGATTTTCAGATTTTTCCAAATTTCCAATTATC</left_flank>
        <right_flank>TGATACCACGTTTTTCAGAATTTCAGTATTTCAGGTTTTTGAGATTTTCA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTTTCAGATTCTCTCAATTCTCCACTTCCCAGGTTTTCAGAATTCCGATATTTCTGAATTTCAGAATGTCACCAATTTCCGCGGTTCAAAGTTTTTCAAAAGTCAAGTTTTCAGAATTTCAGGTTTTTCAGATTCTCAAATTTCACAAAAATAAAAAAAAACATTTTGTTGATCCGAAAAAAATCTAGAAAATCGAAAAAATTTTTAGAATTCCAGAAATTAAGAGCTTCAGAATTTCAGAACTTCAACGTTTCCCAAATTTCCAATTCTCACGATTCTTAGTTTTTCAGAATTCCTGATTTTCACAAGTTTCCAAACTTTTCACGCGTCCGATTTTTAGAATTCCAGCTTTTTCCAAATTTCCAATTATCCTTATTCCACGTTTTCAGAATTTCAGATTTTCACAAGTTTCCAAATATTTTCATGATCCCAAGTTATTCAGAAGTCCCATTTTCAGAATTTCAGATTTTCAGATTTTTCCAAATTTCCAATTATCCTGATACCACGTTTTTCAGAATTTCAGTATTTCAGGTTTTTGAGATTTTCAGATTTTTCAGATTAGAATTCTCCTGATTTCAGGGTTTTCAGAAGTAGAATTGCAGAATTTCGGAACTTTAGACTTTCCCAAATTTTTTGTTCTTATAGTTCCAACTTTTTCGAAAGACCAATTTTAATACAATTTTCAGATTCTCAATTTTCTCAAAAAACAAAAAAAACATTTTGTTGATTCCGAAAAACATCTAGATCTGAATTTTTGTTTTTTTCAAATTTTCTCAAATTTTCTATTTTTTTCCAGTTTCTGACCTATACTTTTTTGTCAAAAAGAATCCCAAAAGAAGCCATTTTCAGATCATTGGTGAGCAAAAAAAAGAGCCGGTGGCCAGTTTTTTCGGACAGTATAAATAGGAAAAAATTTTGTCTGAAAAATGGGTAATTTCAGTTTTTTCTTCTTTTTTTCATTTTTGGATTACTGTACTTCCTGCACATCTAACTCTGT</canonical>
            <polymorphic>GAATTTTCAGATTCTCTCAATTCTCCACTTCCCAGGTTTTCAGAATTCCGATATTTCTGAATTTCAGAATGTCACCAATTTCCGCGGTTCAAAGTTTTTCAAAAGTCAAGTTTTCAGAATTTCAGGTTTTTCAGATTCTCAAATTTCACAAAAATAAAAAAAAACATTTTGTTGATCCGAAAAAAATCTAGAAAATCGAAAAAATTTTTAGAATTCCAGAAATTAAGAGCTTCAGAATTTCAGAACTTCAACGTTTCCCAAATTTCCAATTCTCACGATTCTTAGTTTTTCAGAATTCCTGATTTTCACAAGTTTCCAAACTTTTCACGCGTCCGATTTTTAGAATTCCAGCTTTTTCCAAATTTCCAATTATCCTTATTCCACGTTTTCAGAATTTCAGATTTTCACAAGTTTCCAAATATTTTCATGATCCCAAGTTATTCAGAAGTCCCATTTTCAGAATTTCAGATTTTCAGATTTTTCCAAATTTCCAATTATCMTGATACCACGTTTTTCAGAATTTCAGTATTTCAGGTTTTTGAGATTTTCAGATTTTTCAGATTAGAATTCTCCTGATTTCAGGGTTTTCAGAAGTAGAATTGCAGAATTTCGGAACTTTAGACTTTCCCAAATTTTTTGTTCTTATAGTTCCAACTTTTTCGAAAGACCAATTTTAATACAATTTTCAGATTCTCAATTTTCTCAAAAAACAAAAAAAACATTTTGTTGATTCCGAAAAACATCTAGATCTGAATTTTTGTTTTTTTCAAATTTTCTCAAATTTTCTATTTTTTTCCAGTTTCTGACCTATACTTTTTTGTCAAAAAGAATCCCAAAAGAAGCCATTTTCAGATCATTGGTGAGCAAAAAAAAGAGCCGGTGGCCAGTTTTTTCGGACAGTATAAATAGGAAAAAATTTTGTCTGAAAAATGGGTAATTTCAGTTTTTTCTTCTTTTTTTCATTTTTGGATTACTGTACTTCCTGCACATCTAACTCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAATTCCTGATTTTCACAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTGAGAATCTGAAAATTGTATTAAA</pcr_primer_p2>
		<pcr_amplicon_size>406</pcr_amplicon_size>
		<canonical_amplicon>AGAATTCCTGATTTTCACAAGTTTCCAAACTTTTCACGCGTCCGATTTTTAGAATTCCAGCTTTTTCCAAATTTCCAATTATCCTTATTCCACGTTTTCAGAATTTCAGATTTTCACAAGTTTCCAAATATTTTCATGATCCCAAGTTATTCAGAAGTCCCATTTTCAGAATTTCAGATTTTCAGATTTTTCCAAATTTCCAATTATCCTGATACCACGTTTTTCAGAATTTCAGTATTTCAGGTTTTTGAGATTTTCAGATTTTTCAGATTAGAATTCTCCTGATTTCAGGGTTTTCAGAAGTAGAATTGCAGAATTTCGGAACTTTAGACTTTCCCAAATTTTTTGTTCTTATAGTTCCAACTTTTTCGAAAGACCAATTTTAATACAATTTTCAGATTCTCAA</canonical_amplicon>
		<polymorphic_amplicon>AGAATTCCTGATTTTCACAAGTTTCCAAACTTTTCACGCGTCCGATTTTTAGAATTCCAGCTTTTTCCAAATTTCCAATTATCCTTATTCCACGTTTTCAGAATTTCAGATTTTCACAAGTTTCCAAATATTTTCATGATCCCAAGTTATTCAGAAGTCCCATTTTCAGAATTTCAGATTTTCAGATTTTTCCAAATTTCCAATTATCMTGATACCACGTTTTTCAGAATTTCAGTATTTCAGGTTTTTGAGATTTTCAGATTTTTCAGATTAGAATTCTCCTGATTTCAGGGTTTTCAGAAGTAGAATTGCAGAATTTCGGAACTTTAGACTTTCCCAAATTTTTTGTTCTTATAGTTCCAACTTTTTCGAAAGACCAATTTTAATACAATTTTCAGATTCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37500</snp_id>
        <super_contig>c012400948.Contig5</super_contig>
        <contig_pos>46065</contig_pos>
        <strand></strand>
        <context>agaatttcag[T/C]atttcaggtt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTTTTCCAAATTTCCAATTATCCTGATACCACGTTTTTCAGAATTTCAG</left_flank>
        <right_flank>ATTTCAGGTTTTTGAGATTTTCAGATTTTTCAGATTAGAATTCTCCTGAT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCCCAGGTTTTCAGAATTCCGATATTTCTGAATTTCAGAATGTCACCAATTTCCGCGGTTCAAAGTTTTTCAAAAGTCAAGTTTTCAGAATTTCAGGTTTTTCAGATTCTCAAATTTCACAAAAATAAAAAAAAACATTTTGTTGATCCGAAAAAAATCTAGAAAATCGAAAAAATTTTTAGAATTCCAGAAATTAAGAGCTTCAGAATTTCAGAACTTCAACGTTTCCCAAATTTCCAATTCTCACGATTCTTAGTTTTTCAGAATTCCTGATTTTCACAAGTTTCCAAACTTTTCACGCGTCCGATTTTTAGAATTCCAGCTTTTTCCAAATTTCCAATTATCCTTATTCCACGTTTTCAGAATTTCAGATTTTCACAAGTTTCCAAATATTTTCATGATCCCAAGTTATTCAGAAGTCCCATTTTCAGAATTTCAGATTTTCAGATTTTTCCAAATTTCCAATTATCCTGATACCACGTTTTTCAGAATTTCAGTATTTCAGGTTTTTGAGATTTTCAGATTTTTCAGATTAGAATTCTCCTGATTTCAGGGTTTTCAGAAGTAGAATTGCAGAATTTCGGAACTTTAGACTTTCCCAAATTTTTTGTTCTTATAGTTCCAACTTTTTCGAAAGACCAATTTTAATACAATTTTCAGATTCTCAATTTTCTCAAAAAACAAAAAAAACATTTTGTTGATTCCGAAAAACATCTAGATCTGAATTTTTGTTTTTTTCAAATTTTCTCAAATTTTCTATTTTTTTCCAGTTTCTGACCTATACTTTTTTGTCAAAAAGAATCCCAAAAGAAGCCATTTTCAGATCATTGGTGAGCAAAAAAAAGAGCCGGTGGCCAGTTTTTTCGGACAGTATAAATAGGAAAAAATTTTGTCTGAAAAATGGGTAATTTCAGTTTTTTCTTCTTTTTTTCATTTTTGGATTACTGTACTTCCTGCACATCTAACTCTGTACTTATGAATTCAATCTTTTCGACTTT</canonical>
            <polymorphic>CTTCCCAGGTTTTCAGAATTCCGATATTTCTGAATTTCAGAATGTCACCAATTTCCGCGGTTCAAAGTTTTTCAAAAGTCAAGTTTTCAGAATTTCAGGTTTTTCAGATTCTCAAATTTCACAAAAATAAAAAAAAACATTTTGTTGATCCGAAAAAAATCTAGAAAATCGAAAAAATTTTTAGAATTCCAGAAATTAAGAGCTTCAGAATTTCAGAACTTCAACGTTTCCCAAATTTCCAATTCTCACGATTCTTAGTTTTTCAGAATTCCTGATTTTCACAAGTTTCCAAACTTTTCACGCGTCCGATTTTTAGAATTCCAGCTTTTTCCAAATTTCCAATTATCCTTATTCCACGTTTTCAGAATTTCAGATTTTCACAAGTTTCCAAATATTTTCATGATCCCAAGTTATTCAGAAGTCCCATTTTCAGAATTTCAGATTTTCAGATTTTTCCAAATTTCCAATTATCCTGATACCACGTTTTTCAGAATTTCAGYATTTCAGGTTTTTGAGATTTTCAGATTTTTCAGATTAGAATTCTCCTGATTTCAGGGTTTTCAGAAGTAGAATTGCAGAATTTCGGAACTTTAGACTTTCCCAAATTTTTTGTTCTTATAGTTCCAACTTTTTCGAAAGACCAATTTTAATACAATTTTCAGATTCTCAATTTTCTCAAAAAACAAAAAAAACATTTTGTTGATTCCGAAAAACATCTAGATCTGAATTTTTGTTTTTTTCAAATTTTCTCAAATTTTCTATTTTTTTCCAGTTTCTGACCTATACTTTTTTGTCAAAAAGAATCCCAAAAGAAGCCATTTTCAGATCATTGGTGAGCAAAAAAAAGAGCCGGTGGCCAGTTTTTTCGGACAGTATAAATAGGAAAAAATTTTGTCTGAAAAATGGGTAATTTCAGTTTTTTCTTCTTTTTTTCATTTTTGGATTACTGTACTTCCTGCACATCTAACTCTGTACTTATGAATTCAATCTTTTCGACTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAATTCCTGATTTTCACAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTGAGAATCTGAAAATTGTATTAAA</pcr_primer_p2>
		<pcr_amplicon_size>406</pcr_amplicon_size>
		<canonical_amplicon>AGAATTCCTGATTTTCACAAGTTTCCAAACTTTTCACGCGTCCGATTTTTAGAATTCCAGCTTTTTCCAAATTTCCAATTATCCTTATTCCACGTTTTCAGAATTTCAGATTTTCACAAGTTTCCAAATATTTTCATGATCCCAAGTTATTCAGAAGTCCCATTTTCAGAATTTCAGATTTTCAGATTTTTCCAAATTTCCAATTATCCTGATACCACGTTTTTCAGAATTTCAGTATTTCAGGTTTTTGAGATTTTCAGATTTTTCAGATTAGAATTCTCCTGATTTCAGGGTTTTCAGAAGTAGAATTGCAGAATTTCGGAACTTTAGACTTTCCCAAATTTTTTGTTCTTATAGTTCCAACTTTTTCGAAAGACCAATTTTAATACAATTTTCAGATTCTCAA</canonical_amplicon>
		<polymorphic_amplicon>AGAATTCCTGATTTTCACAAGTTTCCAAACTTTTCACGCGTCCGATTTTTAGAATTCCAGCTTTTTCCAAATTTCCAATTATCCTTATTCCACGTTTTCAGAATTTCAGATTTTCACAAGTTTCCAAATATTTTCATGATCCCAAGTTATTCAGAAGTCCCATTTTCAGAATTTCAGATTTTCAGATTTTTCCAAATTTCCAATTATCCTGATACCACGTTTTTCAGAATTTCAGYATTTCAGGTTTTTGAGATTTTCAGATTTTTCAGATTAGAATTCTCCTGATTTCAGGGTTTTCAGAAGTAGAATTGCAGAATTTCGGAACTTTAGACTTTCCCAAATTTTTTGTTCTTATAGTTCCAACTTTTTCGAAAGACCAATTTTAATACAATTTTCAGATTCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37501</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>10731</contig_pos>
        <strand>+</strand>
        <context>GCTTTTGTGG[A/C]TTTTTTTGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGATGATCAATTGCCCAAGAAGTTGTGGATTTTGTACATAGCTTTTGTGG</left_flank>
        <right_flank>TTTTTTTGCAGAAATTTTCAGTGATTTGATAATAAATAAAAACAGGTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAAATTTGAATTCTACGCCCTTGAAAACCTATGTATCCACTCAGGATTCGAAGTTGTCTGCCTTCTGCTCTAAAGCCAGACCTCTTACCCACTGCGCTAGCCGCCTCGAGGAGCCGCGCGCTCGCCGTTAACCCTGACGGGATATATAGGTTTTAACCCTGACGGGATATATAGGTTTTTAGGGTGTTAAACTCTATTTTTTGAGTTTCAAGTGCTGAAAATAGTGCTGGAAAGCTCTTCTTAAAGGGAAAAATATCCCTAATTTTCAGAAGTCCCTGCTTTTAGCGGAGGCTGCCCTCAAGGATACATCAGAATCTCAGAGGGATTGTGCTGTGAAGACGATCATATTGAATACACGACATGCGTTGATCAACCCAATAAGCGCGGAGTGAATGAGTGTCCCGGACTGCAGGAATACTGTAACAATAGTTTGTTCAAAAAAGTTATGATGATCAATTGCCCAAGAAGTTGTGGATTTTGTACATAGCTTTTGTGGTTTTTTTTGCAGAAATTTTCAGTGATTTGATAATAAATAAAAACAGGTATTTCGGAAGTCAAATCTTTATAAAAACGAATAAATTACAAAATAATAAAAATCAAAAACAAGGAAATAAAGGCGCATTTTTCTTTGATTGATTCCGGAAAACACCTGATTTCAGGATTCTATTTTCGATATTTTTTCAGGTGATAAATTTTCTGAGTCAGTAAAAAATTGAAGTTCGAAATGTTTCCTGATATTTGATGAAATGTCCTTTATCATATCAACTGATCAGCTTCCGTCAGCCAACAATTAACCTAACATATCCGATTATTATGTATCCTATGATTACGCATTTCGAAAACCTTTGATTTTTTTTCTCGCAATTTTCTGATCGTGTTTTTCCCAACTTCCTAGACACCTCCTTCCGACACATACAACTTTGTGATTTTTTATTAATTTTTTTTTCATTATATTAGAAAATCACCCAGAAGTTCAAGGCCAGAATGAATGTCTCCA</canonical>
            <polymorphic>TCAAAAATTTGAATTCTACGCCCTTGAAAACCTATGTATCCACTCAGGATTCGAAGTTGTCTGCCTTCTGCTCTAAAGCCAGACCTCTTACCCACTGCGCTAGCCGCCTCGAGGAGCCGCGCGCTCGCCGTTAACCCTGACGGGATATATAGGTTTTAACCCTGACGGGATATATAGGTTTTTAGGGTGTTAAACTCTATTTTTTGAGTTTCAAGTGCTGAAAATAGTGCTGGAAAGCTCTTCTTAAAGGGAAAAATATCCCTAATTTTCAGAAGTCCCTGCTTTTAGCGGAGGCTGCCCTCAAGGATACATCAGAATCTCAGAGGGATTGTGCTGTGAAGACGATCATATTGAATACACGACATGCGTTGATCAACCCAATAAGCGCGGAGTGAATGAGTGTCCCGGACTGCAGGAATACTGTAACAATAGTTTGTTCAAAAAAGTTATGATGATCAATTGCCCAAGAAGTTGTGGATTTTGTACATAGCTTTTGTGGMTTTTTTTGCAGAAATTTTCAGTGATTTGATAATAAATAAAAACAGGTATTTCGGAAGTCAAATCTTTATAAAAACGAATAAATTACAAAATAATAAAAATCAAAAACAAGGAAATAAAGGCGCATTTTTCTTTGATTGATTCCGGAAAACACCTGATTTCAGGATTCTATTTTCGATATTTTTTCAGGTGATAAATTTTCTGAGTCAGTAAAAAATTGAAGTTCGAAATGTTTCCTGATATTTGATGAAATGTCCTTTATCATATCAACTGATCAGCTTCCGTCAGCCAACAATTAACCTAACATATCCGATTATTATGTATCCTATGATTACGCATTTCGAAAACCTTTGATTTTTTTTCTCGCAATTTTCTGATCGTGTTTTTCCCAACTTCCTAGACACCTCCTTCCGACACATACAACTTTGTGATTTTTTATTAATTTTTTTTTCATTATATTAGAAAATCACCCAGAAGTTCAAGGCCAGAATGAATGTCTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGACGATCATATTGAATACAC</pcr_primer_p1>
		<pcr_primer_p2>TTCGTTTTTATAAAGATTTGACTTC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TGAAGACGATCATATTGAATACACGACATGCGTTGATCAACCCAATAAGCGCGGAGTGAATGAGTGTCCCGGACTGCAGGAATACTGTAACAATAGTTTGTTCAAAAAAGTTATGATGATCAATTGCCCAAGAAGTTGTGGATTTTGTACATAGCTTTTGTGGTTTTTTTTGCAGAAATTTTCAGTGATTTGATAATAAATAAAAACAGGTATTTCGGAAGTCAAATCTTTATAAAAACGAA</canonical_amplicon>
		<polymorphic_amplicon>TGAAGACGATCATATTGAATACACGACATGCGTTGATCAACCCAATAAGCGCGGAGTGAATGAGTGTCCCGGACTGCAGGAATACTGTAACAATAGTTTGTTCAAAAAAGTTATGATGATCAATTGCCCAAGAAGTTGTGGATTTTGTACATAGCTTTTGTGGMTTTTTTTGCAGAAATTTTCAGTGATTTGATAATAAATAAAAACAGGTATTTCGGAAGTCAAATCTTTATAAAAACGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37502</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>13425</contig_pos>
        <strand></strand>
        <context>cctgaattgt[A/G]agtctatctc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGCTAGAGACGCGTTTCTCGTCGTCTGCGTCTCTAGCCTCCTGAATTGT</left_flank>
        <right_flank>AGTCTATCTCGGTTCATAGGAGCGTCAGAATTGTATGTAATTTGTCTATT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGTTTTTTATGATAATTTTCAGACCAATTTTAGCAATTTTCAGCCGATTTTCGACCATGTTCCGTTTTTCAAAGTCAGAATCTAGGCCTTTCAAGCCATTTCAGTCCATTTTTCCGACAATTTTTCAGACAAATCTGTGAATGAATGCAAATTTTTCAGTCTAGTTCTGTTTTACATCCTGTTAAACTTTCAAAGTGATCGAAAACTTGTCAGGCAAGCTCCAGACTCCTGAAAAAGGCCCAAAATCAACTGAAAAATACATTTTTGTACATCTTATTGACCGATACTGTACATTATCAAGAACAAATCGAGTAAAATCTAAGCCAATTTAGAAATTGTATTCTTTTTAAGGAATAATATAAAAACCCGATTCAAAACATGCAATTCTACCTAAAACCAATGTTCTAGCTCACCTAGAAATCGAGATACAACCATTTGAAATTTCCGAGGCTAGAGACGCGTTTCTCGTCGTCTGCGTCTCTAGCCTCCTGAATTGTAAGTCTATCTCGGTTCATAGGAGCGTCAGAATTGTATGTAATTTGTCTATTTTTTGATTAAGATTTTTTTTTGCATAAAGAATTTTTCAAAAGTTACGAAAAGGTCAAAATGGACAAAAAGAAACTAAACAAAAACGTTTTTGTATGTATATCTTATTGGCGAACGATTTTCACAAAAATAGGATAAGTAGACATGTATTTTCTCCTCTTTATTTTTCAACTTACTGTTTCAGAGCACCACCCTAATCCTAAACGACCTGCTCTTTGGCCGTGTATTTATGTACATTCCGCAACTCTGTCCCTATGTTTCTCCATTCTTCTGGACCCCTTCTATCCTTCTAAACACCCTTTATGCCCTTAATAATCATGCTAGATTCGCGAAATCTGTGGTTCAAATCTTTATGGTGCTCAACCGAATGTCATGTGTTCTGTTGCCAGCTGTTTATAATAAAGTGAGTCATCCGGAAAACATAAATTCTCGAACACATATTTATGCAACAT</canonical>
            <polymorphic>TCGGTTTTTTATGATAATTTTCAGACCAATTTTAGCAATTTTCAGCCGATTTTCGACCATGTTCCGTTTTTCAAAGTCAGAATCTAGGCCTTTCAAGCCATTTCAGTCCATTTTTCCGACAATTTTTCAGACAAATCTGTGAATGAATGCAAATTTTTCAGTCTAGTTCTGTTTTACATCCTGTTAAACTTTCAAAGTGATCGAAAACTTGTCAGGCAAGCTCCAGACTCCTGAAAAAGGCCCAAAATCAACTGAAAAATACATTTTTGTACATCTTATTGACCGATACTGTACATTATCAAGAACAAATCGAGTAAAATCTAAGCCAATTTAGAAATTGTATTCTTTTTAAGGAATAATATAAAAACCCGATTCAAAACATGCAATTCTACCTAAAACCAATGTTCTAGCTCACCTAGAAATCGAGATACAACCATTTGAAATTTCCGAGGCTAGAGACGCGTTTCTCGTCGTCTGCGTCTCTAGCCTCCTGAATTGTRAGTCTATCTCGGTTCATAGGAGCGTCAGAATTGTATGTAATTTGTCTATTTTTTGATTAAGATTTTTTTTTGCATAAAGAATTTTTCAAAAGTTACGAAAAGGTCAAAATGGACAAAAAGAAACTAAACAAAAACGTTTTTGTATGTATATCTTATTGGCGAACGATTTTCACAAAAATAGGATAAGTAGACATGTATTTTCTCCTCTTTATTTTTCAACTTACTGTTTCAGAGCACCACCCTAATCCTAAACGACCTGCTCTTTGGCCGTGTATTTATGTACATTCCGCAACTCTGTCCCTATGTTTCTCCATTCTTCTGGACCCCTTCTATCCTTCTAAACACCCTTTATGCCCTTAATAATCATGCTAGATTCGCGAAATCTGTGGTTCAAATCTTTATGGTGCTCAACCGAATGTCATGTGTTCTGTTGCCAGCTGTTTATAATAAAGTGAGTCATCCGGAAAACATAAATTCTCGAACACATATTTATGCAACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATAAAAACCCGATTCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TGTCTACTTATCCTATTTTTGTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>336</pcr_amplicon_size>
		<canonical_amplicon>AATATAAAAACCCGATTCAAAACATGCAATTCTACCTAAAACCAATGTTCTAGCTCACCTAGAAATCGAGATACAACCATTTGAAATTTCCGAGGCTAGAGACGCGTTTCTCGTCGTCTGCGTCTCTAGCCTCCTGAATTGTAAGTCTATCTCGGTTCATAGGAGCGTCAGAATTGTATGTAATTTGTCTATTTTTTGATTAAGATTTTTTTTTGCATAAAGAATTTTTCAAAAGTTACGAAAAGGTCAAAATGGACAAAAAGAAACTAAACAAAAACGTTTTTGTATGTATATCTTATTGGCGAACGATTTTCACAAAAATAGGATAAGTAGACA</canonical_amplicon>
		<polymorphic_amplicon>AATATAAAAACCCGATTCAAAACATGCAATTCTACCTAAAACCAATGTTCTAGCTCACCTAGAAATCGAGATACAACCATTTGAAATTTCCGAGGCTAGAGACGCGTTTCTCGTCGTCTGCGTCTCTAGCCTCCTGAATTGTRAGTCTATCTCGGTTCATAGGAGCGTCAGAATTGTATGTAATTTGTCTATTTTTTGATTAAGATTTTTTTTTGCATAAAGAATTTTTCAAAAGTTACGAAAAGGTCAAAATGGACAAAAAGAAACTAAACAAAAACGTTTTTGTATGTATATCTTATTGGCGAACGATTTTCACAAAAATAGGATAAGTAGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37503</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>14604</contig_pos>
        <strand></strand>
        <context>tttgaaaagt[G/T]ttttatcaat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATATCAAAAAGTGATCAACTGATAAAATGTTCATCATAATTTGAAAAGT</left_flank>
        <right_flank>TTTTATCAATTGATTGCTTTCTGATGCCTCAAACAGAAACCGAGATATAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTGTATTAGAAGGATCGGTCCTTCTATTAAAGGGGCCCTTCTAATACAGGTTTTACGCTATTTCTTATCTTATTTTTGTTTTCCAGGCCTCCCTTTCCATGTTCCAGTCCATTTTTATTATCACCGCTCTATCCTTCACATTCATTTGCACATCGGTTACTCTCTACAAGCTAATCTTACTACCCGGCCGTATAAAATCCGCTGAAAAATCCCTTTGCTTCACTAGTATTTCAATATCTTTTACGTTTGTTCTAGTGGCAATTACTCAGGTTGAATGCTGGAAAACGCCAGAAATTTTGATAGATTCGCAGTTTTCAGATGTTGTTTGCCACGTGTCCAAGTTGTCGTTCAGATGAACTGTATATTTTGCAGTTTCTGGCTTTTGACACTTTCACGGTGGGGTGAGTATATCTAAAATTTGAGCAGATATATCTCATTTTCTGAGAAATATATCAAAAAGTGATCAACTGATAAAATGTTCATCATAATTTGAAAAGTGTTTTATCAATTGATTGCTTTCTGATGCCTCAAACAGAAACCGAGATATATAAGCTCAAAGTTGGCGGTCCGAGTAGCCTTCTATTAGAGCGTGTATGGTAATTTTAATGTTCGTCCAACAATACATTTCTCTGTATACCACTATAATGGAATAAACGTCCTTTGAGCCAATTTATCTCGGTTCCTATGAAAGCTATCAAAAGATTGTCAATTGATAAAATATCAGTGATATTATGATTAATATTTTATCAGTTGACAATTTTTAAATATCTTTTACAGGAATCAAGATAATTGAGCTAAAACTTGACGGTTTGGGTGGCCTTCTATTAAAAGGAATACAGTATTTTCTAATTGAATTTTTTAGATCTGCCATAATTCTAATCCTCACCAACAAACATCTTCGTACCTCGATTTTCACATCTTCCAAGAAACGAAAAATTGTGAATATCACAGTTACAGCAAGACAATCTGGAAGATTTTCTTCTACTCAAACCTATTAAT</canonical>
            <polymorphic>CCTGTATTAGAAGGATCGGTCCTTCTATTAAAGGGGCCCTTCTAATACAGGTTTTACGCTATTTCTTATCTTATTTTTGTTTTCCAGGCCTCCCTTTCCATGTTCCAGTCCATTTTTATTATCACCGCTCTATCCTTCACATTCATTTGCACATCGGTTACTCTCTACAAGCTAATCTTACTACCCGGCCGTATAAAATCCGCTGAAAAATCCCTTTGCTTCACTAGTATTTCAATATCTTTTACGTTTGTTCTAGTGGCAATTACTCAGGTTGAATGCTGGAAAACGCCAGAAATTTTGATAGATTCGCAGTTTTCAGATGTTGTTTGCCACGTGTCCAAGTTGTCGTTCAGATGAACTGTATATTTTGCAGTTTCTGGCTTTTGACACTTTCACGGTGGGGTGAGTATATCTAAAATTTGAGCAGATATATCTCATTTTCTGAGAAATATATCAAAAAGTGATCAACTGATAAAATGTTCATCATAATTTGAAAAGTKTTTTATCAATTGATTGCTTTCTGATGCCTCAAACAGAAACCGAGATATATAAGCTCAAAGTTGGCGGTCCGAGTAGCCTTCTATTAGAGCGTGTATGGTAATTTTAATGTTCGTCCAACAATACATTTCTCTGTATACCACTATAATGGAATAAACGTCCTTTGAGCCAATTTATCTCGGTTCCTATGAAAGCTATCAAAAGATTGTCAATTGATAAAATATCAGTGATATTATGATTAATATTTTATCAGTTGACAATTTTTAAATATCTTTTACAGGAATCAAGATAATTGAGCTAAAACTTGACGGTTTGGGTGGCCTTCTATTAAAAGGAATACAGTATTTTCTAATTGAATTTTTTAGATCTGCCATAATTCTAATCCTCACCAACAAACATCTTCGTACCTCGATTTTCACATCTTCCAAGAAACGAAAAATTGTGAATATCACAGTTACAGCAAGACAATCTGGAAGATTTTCTTCTACTCAAACCTATTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>124 93 90 87 74 72 69 58 53 51 47 37 35 30 26 15 12 7 6 5 5 4</canonical_bands>
                <polymorphic_bands>130 124 90 87 74 72 69 58 53 51 47 35 30 26 15 12 7 6 5 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTCTGGCTTTTGACACTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTGGACGAACATTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTTCTGGCTTTTGACACTTTCACGGTGGGGTGAGTATATCTAAAATTTGAGCAGATATATCTCATTTTCTGAGAAATATATCAAAAAGTGATCAACTGATAAAATGTTCATCATAATTTGAAAAGTGTTTTATCAATTGATTGCTTTCTGATGCCTCAAACAGAAACCGAGATATATAAGCTCAAAGTTGGCGGTCCGAGTAGCCTTCTATTAGAGCGTGTATGGTAATTTTAATGTTCGTCCAACAAT</canonical_amplicon>
		<polymorphic_amplicon>GTTTCTGGCTTTTGACACTTTCACGGTGGGGTGAGTATATCTAAAATTTGAGCAGATATATCTCATTTTCTGAGAAATATATCAAAAAGTGATCAACTGATAAAATGTTCATCATAATTTGAAAAGTKTTTTATCAATTGATTGCTTTCTGATGCCTCAAACAGAAACCGAGATATATAAGCTCAAAGTTGGCGGTCCGAGTAGCCTTCTATTAGAGCGTGTATGGTAATTTTAATGTTCGTCCAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37504</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>18114</contig_pos>
        <strand></strand>
        <context>cggccagaag[C/T]tgcaagccga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAG</left_flank>
        <right_flank>TGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTGATTAACTTTCTTGCCTTTCTTCGAATTTTCTAGCATCCAGGTTTTTTTTTGATTCCTGGAAACAAAACTTCCAAAAATACAGTTTTTTTCAACAAAAATTACCTTCTAGTTGCGATATCTCCCAAGAACTTGACATTAAAAACGTTGACTTGAATTTTATTTATCTGAAAAATTTAAATTATGACAAGAATTCAAAGAATAAATTACCTGATAAGTATCGTACTCTTTTTTTTCGAGAACATCGTCTGTTATTGTTTCCAAAAAATGCTCCAAAGATTGAAAGGATGCAACTTTAAAACAAAGTTTTTAGAGAAACGGCAAGAAAAATAGTTTAGAAAACAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATTTTTGTGACCTTTGACTTTTCATTTCTTGTTTTCCAATTTTAACATTTTCAAAATTTGATTTCTCTCTCGAAAAAATCAAAAATAGAGTCACGTGGTATTTTTCAAATATTGCTTATAATTTCGTTAAAAATGGACAGGATCTAGAAAATCCAAAAAAATTAGGTCATGATCGATCTTCACTAGATTGATTTTCTCTATGTTGATCTCGTGAGGGATTCTATCTAGAACTTCCGTTATAACTTTTGTGCCATATCCTTCTTCTGATCAATAAAAAAATACCTA</canonical>
            <polymorphic>CCTGATTAACTTTCTTGCCTTTCTTCGAATTTTCTAGCATCCAGGTTTTTTTTTGATTCCTGGAAACAAAACTTCCAAAAATACAGTTTTTTTCAACAAAAATTACCTTCTAGTTGCGATATCTCCCAAGAACTTGACATTAAAAACGTTGACTTGAATTTTATTTATCTGAAAAATTTAAATTATGACAAGAATTCAAAGAATAAATTACCTGATAAGTATCGTACTCTTTTTTTTCGAGAACATCGTCTGTTATTGTTTCCAAAAAATGCTCCAAAGATTGAAAGGATGCAACTTTAAAACAAAGTTTTTAGAGAAACGGCAAGAAAAATAGTTTAGAAAACAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGYTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATTTTTGTGACCTTTGACTTTTCATTTCTTGTTTTCCAATTTTAACATTTTCAAAATTTGATTTCTCTCTCGAAAAAATCAAAAATAGAGTCACGTGGTATTTTTCAAATATTGCTTATAATTTCGTTAAAAATGGACAGGATCTAGAAAATCCAAAAAAATTAGGTCATGATCGATCTTCACTAGATTGATTTTCTCTATGTTGATCTCGTGAGGGATTCTATCTAGAACTTCCGTTATAACTTTTGTGCCATATCCTTCTTCTGATCAATAAAAAAATACCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>456 435 50 45 14</canonical_bands>
                <polymorphic_bands>456 435 95 14</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGNNNCTG</site>
                <isoschizomers>
                    <enzyme>AlwNI</enzyme>
                    <enzyme>CaiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 438 61</canonical_bands>
                <polymorphic_bands>562 438</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>498 372 70 48 12</canonical_bands>
                <polymorphic_bands>568 372 48 12</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>400 327 129 35 25 22 21 14 7 7 7 6</canonical_bands>
                <polymorphic_bands>400 327 129 35 25 22 21 14 14 7 6</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>501 381 67 48 3</canonical_bands>
                <polymorphic_bands>571 381 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATTTAAAATGAGTGAAGCAC</pcr_primer_p1>
		<pcr_primer_p2>AATAAATTTTTCCGAGAATTACC</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>CAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATT</canonical_amplicon>
		<polymorphic_amplicon>CAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGYTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37505</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>18161</contig_pos>
        <strand>+</strand>
        <context>agtttgagct[C/T]aattatctcg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCT</left_flank>
        <right_flank>AATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTTGATTCCTGGAAACAAAACTTCCAAAAATACAGTTTTTTTCAACAAAAATTACCTTCTAGTTGCGATATCTCCCAAGAACTTGACATTAAAAACGTTGACTTGAATTTTATTTATCTGAAAAATTTAAATTATGACAAGAATTCAAAGAATAAATTACCTGATAAGTATCGTACTCTTTTTTTTCGAGAACATCGTCTGTTATTGTTTCCAAAAAATGCTCCAAAGATTGAAAGGATGCAACTTTAAAACAAAGTTTTTAGAGAAACGGCAAGAAAAATAGTTTAGAAAACAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATTTTTGTGACCTTTGACTTTTCATTTCTTGTTTTCCAATTTTAACATTTTCAAAATTTGATTTCTCTCTCGAAAAAATCAAAAATAGAGTCACGTGGTATTTTTCAAATATTGCTTATAATTTCGTTAAAAATGGACAGGATCTAGAAAATCCAAAAAAATTAGGTCATGATCGATCTTCACTAGATTGATTTTCTCTATGTTGATCTCGTGAGGGATTCTATCTAGAACTTCCGTTATAACTTTTGTGCCATATCCTTCTTCTGATCAATAAAAAAATACCTAGGGAATTCAAAAAATTAGGTCGTGACCTACCAAACCCAAACAATTAG</canonical>
            <polymorphic>TTTTTTTGATTCCTGGAAACAAAACTTCCAAAAATACAGTTTTTTTCAACAAAAATTACCTTCTAGTTGCGATATCTCCCAAGAACTTGACATTAAAAACGTTGACTTGAATTTTATTTATCTGAAAAATTTAAATTATGACAAGAATTCAAAGAATAAATTACCTGATAAGTATCGTACTCTTTTTTTTCGAGAACATCGTCTGTTATTGTTTCCAAAAAATGCTCCAAAGATTGAAAGGATGCAACTTTAAAACAAAGTTTTTAGAGAAACGGCAAGAAAAATAGTTTAGAAAACAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTYAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATTTTTGTGACCTTTGACTTTTCATTTCTTGTTTTCCAATTTTAACATTTTCAAAATTTGATTTCTCTCTCGAAAAAATCAAAAATAGAGTCACGTGGTATTTTTCAAATATTGCTTATAATTTCGTTAAAAATGGACAGGATCTAGAAAATCCAAAAAAATTAGGTCATGATCGATCTTCACTAGATTGATTTTCTCTATGTTGATCTCGTGAGGGATTCTATCTAGAACTTCCGTTATAACTTTTGTGCCATATCCTTCTTCTGATCAATAAAAAAATACCTAGGGAATTCAAAAAATTAGGTCGTGACCTACCAAACCCAAACAATTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATTTAAAATGAGTGAAGCAC</pcr_primer_p1>
		<pcr_primer_p2>AATAAATTTTTCCGAGAATTACC</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>CAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATT</canonical_amplicon>
		<polymorphic_amplicon>CAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTYAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37506</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>18176</contig_pos>
        <strand>+</strand>
        <context>atctcggttc[C/T]tmtrmragrt</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTC</left_flank>
        <right_flank>TCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAACAAAACTTCCAAAAATACAGTTTTTTTCAACAAAAATTACCTTCTAGTTGCGATATCTCCCAAGAACTTGACATTAAAAACGTTGACTTGAATTTTATTTATCTGAAAAATTTAAATTATGACAAGAATTCAAAGAATAAATTACCTGATAAGTATCGTACTCTTTTTTTTCGAGAACATCGTCTGTTATTGTTTCCAAAAAATGCTCCAAAGATTGAAAGGATGCAACTTTAAAACAAAGTTTTTAGAGAAACGGCAAGAAAAATAGTTTAGAAAACAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATTTTTGTGACCTTTGACTTTTCATTTCTTGTTTTCCAATTTTAACATTTTCAAAATTTGATTTCTCTCTCGAAAAAATCAAAAATAGAGTCACGTGGTATTTTTCAAATATTGCTTATAATTTCGTTAAAAATGGACAGGATCTAGAAAATCCAAAAAAATTAGGTCATGATCGATCTTCACTAGATTGATTTTCTCTATGTTGATCTCGTGAGGGATTCTATCTAGAACTTCCGTTATAACTTTTGTGCCATATCCTTCTTCTGATCAATAAAAAAATACCTAGGGAATTCAAAAAATTAGGTCGTGACCTACCAAACCCAAACAATTAGGTTATGACCTATGAA</canonical>
            <polymorphic>GAAACAAAACTTCCAAAAATACAGTTTTTTTCAACAAAAATTACCTTCTAGTTGCGATATCTCCCAAGAACTTGACATTAAAAACGTTGACTTGAATTTTATTTATCTGAAAAATTTAAATTATGACAAGAATTCAAAGAATAAATTACCTGATAAGTATCGTACTCTTTTTTTTCGAGAACATCGTCTGTTATTGTTTCCAAAAAATGCTCCAAAGATTGAAAGGATGCAACTTTAAAACAAAGTTTTTAGAGAAACGGCAAGAAAAATAGTTTAGAAAACAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCYTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATTTTTGTGACCTTTGACTTTTCATTTCTTGTTTTCCAATTTTAACATTTTCAAAATTTGATTTCTCTCTCGAAAAAATCAAAAATAGAGTCACGTGGTATTTTTCAAATATTGCTTATAATTTCGTTAAAAATGGACAGGATCTAGAAAATCCAAAAAAATTAGGTCATGATCGATCTTCACTAGATTGATTTTCTCTATGTTGATCTCGTGAGGGATTCTATCTAGAACTTCCGTTATAACTTTTGTGCCATATCCTTCTTCTGATCAATAAAAAAATACCTAGGGAATTCAAAAAATTAGGTCGTGACCTACCAAACCCAAACAATTAGGTTATGACCTATGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAATTTAAAATGAGTGAAGCAC</pcr_primer_p1>
		<pcr_primer_p2>AATAAATTTTTCCGAGAATTACC</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>CAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATT</canonical_amplicon>
		<polymorphic_amplicon>CAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCYTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37507</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>18178</contig_pos>
        <strand>+</strand>
        <context>ctcggttcyt[A/C]trmragrtat</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTT</left_flank>
        <right_flank>TGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAAAACTTCCAAAAATACAGTTTTTTTCAACAAAAATTACCTTCTAGTTGCGATATCTCCCAAGAACTTGACATTAAAAACGTTGACTTGAATTTTATTTATCTGAAAAATTTAAATTATGACAAGAATTCAAAGAATAAATTACCTGATAAGTATCGTACTCTTTTTTTTCGAGAACATCGTCTGTTATTGTTTCCAAAAAATGCTCCAAAGATTGAAAGGATGCAACTTTAAAACAAAGTTTTTAGAGAAACGGCAAGAAAAATAGTTTAGAAAACAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATTTTTGTGACCTTTGACTTTTCATTTCTTGTTTTCCAATTTTAACATTTTCAAAATTTGATTTCTCTCTCGAAAAAATCAAAAATAGAGTCACGTGGTATTTTTCAAATATTGCTTATAATTTCGTTAAAAATGGACAGGATCTAGAAAATCCAAAAAAATTAGGTCATGATCGATCTTCACTAGATTGATTTTCTCTATGTTGATCTCGTGAGGGATTCTATCTAGAACTTCCGTTATAACTTTTGTGCCATATCCTTCTTCTGATCAATAAAAAAATACCTAGGGAATTCAAAAAATTAGGTCGTGACCTACCAAACCCAAACAATTAGGTTATGACCTATGAAAC</canonical>
            <polymorphic>AACAAAACTTCCAAAAATACAGTTTTTTTCAACAAAAATTACCTTCTAGTTGCGATATCTCCCAAGAACTTGACATTAAAAACGTTGACTTGAATTTTATTTATCTGAAAAATTTAAATTATGACAAGAATTCAAAGAATAAATTACCTGATAAGTATCGTACTCTTTTTTTTCGAGAACATCGTCTGTTATTGTTTCCAAAAAATGCTCCAAAGATTGAAAGGATGCAACTTTAAAACAAAGTTTTTAGAGAAACGGCAAGAAAAATAGTTTAGAAAACAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTMTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATTTTTGTGACCTTTGACTTTTCATTTCTTGTTTTCCAATTTTAACATTTTCAAAATTTGATTTCTCTCTCGAAAAAATCAAAAATAGAGTCACGTGGTATTTTTCAAATATTGCTTATAATTTCGTTAAAAATGGACAGGATCTAGAAAATCCAAAAAAATTAGGTCATGATCGATCTTCACTAGATTGATTTTCTCTATGTTGATCTCGTGAGGGATTCTATCTAGAACTTCCGTTATAACTTTTGTGCCATATCCTTCTTCTGATCAATAAAAAAATACCTAGGGAATTCAAAAAATTAGGTCGTGACCTACCAAACCCAAACAATTAGGTTATGACCTATGAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAATTTAAAATGAGTGAAGCAC</pcr_primer_p1>
		<pcr_primer_p2>AATAAATTTTTCCGAGAATTACC</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>CAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATT</canonical_amplicon>
		<polymorphic_amplicon>CAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTMTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37508</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>18180</contig_pos>
        <strand>+</strand>
        <context>cggttcytmt[A/G]mragrtatma</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCT</left_flank>
        <right_flank>CAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAACTTCCAAAAATACAGTTTTTTTCAACAAAAATTACCTTCTAGTTGCGATATCTCCCAAGAACTTGACATTAAAAACGTTGACTTGAATTTTATTTATCTGAAAAATTTAAATTATGACAAGAATTCAAAGAATAAATTACCTGATAAGTATCGTACTCTTTTTTTTCGAGAACATCGTCTGTTATTGTTTCCAAAAAATGCTCCAAAGATTGAAAGGATGCAACTTTAAAACAAAGTTTTTAGAGAAACGGCAAGAAAAATAGTTTAGAAAACAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATTTTTGTGACCTTTGACTTTTCATTTCTTGTTTTCCAATTTTAACATTTTCAAAATTTGATTTCTCTCTCGAAAAAATCAAAAATAGAGTCACGTGGTATTTTTCAAATATTGCTTATAATTTCGTTAAAAATGGACAGGATCTAGAAAATCCAAAAAAATTAGGTCATGATCGATCTTCACTAGATTGATTTTCTCTATGTTGATCTCGTGAGGGATTCTATCTAGAACTTCCGTTATAACTTTTGTGCCATATCCTTCTTCTGATCAATAAAAAAATACCTAGGGAATTCAAAAAATTAGGTCGTGACCTACCAAACCCAAACAATTAGGTTATGACCTATGAAACTA</canonical>
            <polymorphic>CAAAACTTCCAAAAATACAGTTTTTTTCAACAAAAATTACCTTCTAGTTGCGATATCTCCCAAGAACTTGACATTAAAAACGTTGACTTGAATTTTATTTATCTGAAAAATTTAAATTATGACAAGAATTCAAAGAATAAATTACCTGATAAGTATCGTACTCTTTTTTTTCGAGAACATCGTCTGTTATTGTTTCCAAAAAATGCTCCAAAGATTGAAAGGATGCAACTTTAAAACAAAGTTTTTAGAGAAACGGCAAGAAAAATAGTTTAGAAAACAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTRCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATTTTTGTGACCTTTGACTTTTCATTTCTTGTTTTCCAATTTTAACATTTTCAAAATTTGATTTCTCTCTCGAAAAAATCAAAAATAGAGTCACGTGGTATTTTTCAAATATTGCTTATAATTTCGTTAAAAATGGACAGGATCTAGAAAATCCAAAAAAATTAGGTCATGATCGATCTTCACTAGATTGATTTTCTCTATGTTGATCTCGTGAGGGATTCTATCTAGAACTTCCGTTATAACTTTTGTGCCATATCCTTCTTCTGATCAATAAAAAAATACCTAGGGAATTCAAAAAATTAGGTCGTGACCTACCAAACCCAAACAATTAGGTTATGACCTATGAAACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 225 141 70 64</canonical_bands>
                <polymorphic_bands>564 225 141 70</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATTTAAAATGAGTGAAGCAC</pcr_primer_p1>
		<pcr_primer_p2>AATAAATTTTTCCGAGAATTACC</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>CAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATT</canonical_amplicon>
		<polymorphic_amplicon>CAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTRCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37509</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>18181</contig_pos>
        <strand>+</strand>
        <context>ggttcytmtr[A/C]ragrtatmaw</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTG</left_flank>
        <right_flank>AAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAACTTCCAAAAATACAGTTTTTTTCAACAAAAATTACCTTCTAGTTGCGATATCTCCCAAGAACTTGACATTAAAAACGTTGACTTGAATTTTATTTATCTGAAAAATTTAAATTATGACAAGAATTCAAAGAATAAATTACCTGATAAGTATCGTACTCTTTTTTTTCGAGAACATCGTCTGTTATTGTTTCCAAAAAATGCTCCAAAGATTGAAAGGATGCAACTTTAAAACAAAGTTTTTAGAGAAACGGCAAGAAAAATAGTTTAGAAAACAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATTTTTGTGACCTTTGACTTTTCATTTCTTGTTTTCCAATTTTAACATTTTCAAAATTTGATTTCTCTCTCGAAAAAATCAAAAATAGAGTCACGTGGTATTTTTCAAATATTGCTTATAATTTCGTTAAAAATGGACAGGATCTAGAAAATCCAAAAAAATTAGGTCATGATCGATCTTCACTAGATTGATTTTCTCTATGTTGATCTCGTGAGGGATTCTATCTAGAACTTCCGTTATAACTTTTGTGCCATATCCTTCTTCTGATCAATAAAAAAATACCTAGGGAATTCAAAAAATTAGGTCGTGACCTACCAAACCCAAACAATTAGGTTATGACCTATGAAACTAG</canonical>
            <polymorphic>AAAACTTCCAAAAATACAGTTTTTTTCAACAAAAATTACCTTCTAGTTGCGATATCTCCCAAGAACTTGACATTAAAAACGTTGACTTGAATTTTATTTATCTGAAAAATTTAAATTATGACAAGAATTCAAAGAATAAATTACCTGATAAGTATCGTACTCTTTTTTTTCGAGAACATCGTCTGTTATTGTTTCCAAAAAATGCTCCAAAGATTGAAAGGATGCAACTTTAAAACAAAGTTTTTAGAGAAACGGCAAGAAAAATAGTTTAGAAAACAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGMAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATTTTTGTGACCTTTGACTTTTCATTTCTTGTTTTCCAATTTTAACATTTTCAAAATTTGATTTCTCTCTCGAAAAAATCAAAAATAGAGTCACGTGGTATTTTTCAAATATTGCTTATAATTTCGTTAAAAATGGACAGGATCTAGAAAATCCAAAAAAATTAGGTCATGATCGATCTTCACTAGATTGATTTTCTCTATGTTGATCTCGTGAGGGATTCTATCTAGAACTTCCGTTATAACTTTTGTGCCATATCCTTCTTCTGATCAATAAAAAAATACCTAGGGAATTCAAAAAATTAGGTCGTGACCTACCAAACCCAAACAATTAGGTTATGACCTATGAAACTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>501 224 141 70 64</canonical_bands>
                <polymorphic_bands>565 224 141 70</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATTTAAAATGAGTGAAGCAC</pcr_primer_p1>
		<pcr_primer_p2>AATAAATTTTTCCGAGAATTACC</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>CAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATT</canonical_amplicon>
		<polymorphic_amplicon>CAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGMAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37510</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>18182</contig_pos>
        <strand>+</strand>
        <context>gttcytmtrm[A/G]agrtatmawa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGC</left_flank>
        <right_flank>AGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTTCCAAAAATACAGTTTTTTTCAACAAAAATTACCTTCTAGTTGCGATATCTCCCAAGAACTTGACATTAAAAACGTTGACTTGAATTTTATTTATCTGAAAAATTTAAATTATGACAAGAATTCAAAGAATAAATTACCTGATAAGTATCGTACTCTTTTTTTTCGAGAACATCGTCTGTTATTGTTTCCAAAAAATGCTCCAAAGATTGAAAGGATGCAACTTTAAAACAAAGTTTTTAGAGAAACGGCAAGAAAAATAGTTTAGAAAACAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATTTTTGTGACCTTTGACTTTTCATTTCTTGTTTTCCAATTTTAACATTTTCAAAATTTGATTTCTCTCTCGAAAAAATCAAAAATAGAGTCACGTGGTATTTTTCAAATATTGCTTATAATTTCGTTAAAAATGGACAGGATCTAGAAAATCCAAAAAAATTAGGTCATGATCGATCTTCACTAGATTGATTTTCTCTATGTTGATCTCGTGAGGGATTCTATCTAGAACTTCCGTTATAACTTTTGTGCCATATCCTTCTTCTGATCAATAAAAAAATACCTAGGGAATTCAAAAAATTAGGTCGTGACCTACCAAACCCAAACAATTAGGTTATGACCTATGAAACTAGG</canonical>
            <polymorphic>AAACTTCCAAAAATACAGTTTTTTTCAACAAAAATTACCTTCTAGTTGCGATATCTCCCAAGAACTTGACATTAAAAACGTTGACTTGAATTTTATTTATCTGAAAAATTTAAATTATGACAAGAATTCAAAGAATAAATTACCTGATAAGTATCGTACTCTTTTTTTTCGAGAACATCGTCTGTTATTGTTTCCAAAAAATGCTCCAAAGATTGAAAGGATGCAACTTTAAAACAAAGTTTTTAGAGAAACGGCAAGAAAAATAGTTTAGAAAACAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCRAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATTTTTGTGACCTTTGACTTTTCATTTCTTGTTTTCCAATTTTAACATTTTCAAAATTTGATTTCTCTCTCGAAAAAATCAAAAATAGAGTCACGTGGTATTTTTCAAATATTGCTTATAATTTCGTTAAAAATGGACAGGATCTAGAAAATCCAAAAAAATTAGGTCATGATCGATCTTCACTAGATTGATTTTCTCTATGTTGATCTCGTGAGGGATTCTATCTAGAACTTCCGTTATAACTTTTGTGCCATATCCTTCTTCTGATCAATAAAAAAATACCTAGGGAATTCAAAAAATTAGGTCGTGACCTACCAAACCCAAACAATTAGGTTATGACCTATGAAACTAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>502 223 141 70 64</canonical_bands>
                <polymorphic_bands>566 223 141 70</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATTTAAAATGAGTGAAGCAC</pcr_primer_p1>
		<pcr_primer_p2>AATAAATTTTTCCGAGAATTACC</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>CAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATT</canonical_amplicon>
		<polymorphic_amplicon>CAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCRAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37511</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>18185</contig_pos>
        <strand>+</strand>
        <context>cytmtrmrag[A/G]tatmawaaat</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAG</left_flank>
        <right_flank>TATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCCAAAAATACAGTTTTTTTCAACAAAAATTACCTTCTAGTTGCGATATCTCCCAAGAACTTGACATTAAAAACGTTGACTTGAATTTTATTTATCTGAAAAATTTAAATTATGACAAGAATTCAAAGAATAAATTACCTGATAAGTATCGTACTCTTTTTTTTCGAGAACATCGTCTGTTATTGTTTCCAAAAAATGCTCCAAAGATTGAAAGGATGCAACTTTAAAACAAAGTTTTTAGAGAAACGGCAAGAAAAATAGTTTAGAAAACAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATTTTTGTGACCTTTGACTTTTCATTTCTTGTTTTCCAATTTTAACATTTTCAAAATTTGATTTCTCTCTCGAAAAAATCAAAAATAGAGTCACGTGGTATTTTTCAAATATTGCTTATAATTTCGTTAAAAATGGACAGGATCTAGAAAATCCAAAAAAATTAGGTCATGATCGATCTTCACTAGATTGATTTTCTCTATGTTGATCTCGTGAGGGATTCTATCTAGAACTTCCGTTATAACTTTTGTGCCATATCCTTCTTCTGATCAATAAAAAAATACCTAGGGAATTCAAAAAATTAGGTCGTGACCTACCAAACCCAAACAATTAGGTTATGACCTATGAAACTAGGTCA</canonical>
            <polymorphic>CTTCCAAAAATACAGTTTTTTTCAACAAAAATTACCTTCTAGTTGCGATATCTCCCAAGAACTTGACATTAAAAACGTTGACTTGAATTTTATTTATCTGAAAAATTTAAATTATGACAAGAATTCAAAGAATAAATTACCTGATAAGTATCGTACTCTTTTTTTTCGAGAACATCGTCTGTTATTGTTTCCAAAAAATGCTCCAAAGATTGAAAGGATGCAACTTTAAAACAAAGTTTTTAGAGAAACGGCAAGAAAAATAGTTTAGAAAACAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGRTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATTTTTGTGACCTTTGACTTTTCATTTCTTGTTTTCCAATTTTAACATTTTCAAAATTTGATTTCTCTCTCGAAAAAATCAAAAATAGAGTCACGTGGTATTTTTCAAATATTGCTTATAATTTCGTTAAAAATGGACAGGATCTAGAAAATCCAAAAAAATTAGGTCATGATCGATCTTCACTAGATTGATTTTCTCTATGTTGATCTCGTGAGGGATTCTATCTAGAACTTCCGTTATAACTTTTGTGCCATATCCTTCTTCTGATCAATAAAAAAATACCTAGGGAATTCAAAAAATTAGGTCGTGACCTACCAAACCCAAACAATTAGGTTATGACCTATGAAACTAGGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAATTTAAAATGAGTGAAGCAC</pcr_primer_p1>
		<pcr_primer_p2>AATAAATTTTTCCGAGAATTACC</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>CAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATT</canonical_amplicon>
		<polymorphic_amplicon>CAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGRTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37512</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>18189</contig_pos>
        <strand>+</strand>
        <context>trmragrtat[A/C]awaaatgtgt</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTAT</left_flank>
        <right_flank>AAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAATACAGTTTTTTTCAACAAAAATTACCTTCTAGTTGCGATATCTCCCAAGAACTTGACATTAAAAACGTTGACTTGAATTTTATTTATCTGAAAAATTTAAATTATGACAAGAATTCAAAGAATAAATTACCTGATAAGTATCGTACTCTTTTTTTTCGAGAACATCGTCTGTTATTGTTTCCAAAAAATGCTCCAAAGATTGAAAGGATGCAACTTTAAAACAAAGTTTTTAGAGAAACGGCAAGAAAAATAGTTTAGAAAACAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATTTTTGTGACCTTTGACTTTTCATTTCTTGTTTTCCAATTTTAACATTTTCAAAATTTGATTTCTCTCTCGAAAAAATCAAAAATAGAGTCACGTGGTATTTTTCAAATATTGCTTATAATTTCGTTAAAAATGGACAGGATCTAGAAAATCCAAAAAAATTAGGTCATGATCGATCTTCACTAGATTGATTTTCTCTATGTTGATCTCGTGAGGGATTCTATCTAGAACTTCCGTTATAACTTTTGTGCCATATCCTTCTTCTGATCAATAAAAAAATACCTAGGGAATTCAAAAAATTAGGTCGTGACCTACCAAACCCAAACAATTAGGTTATGACCTATGAAACTAGGTCAACGC</canonical>
            <polymorphic>CAAAAATACAGTTTTTTTCAACAAAAATTACCTTCTAGTTGCGATATCTCCCAAGAACTTGACATTAAAAACGTTGACTTGAATTTTATTTATCTGAAAAATTTAAATTATGACAAGAATTCAAAGAATAAATTACCTGATAAGTATCGTACTCTTTTTTTTCGAGAACATCGTCTGTTATTGTTTCCAAAAAATGCTCCAAAGATTGAAAGGATGCAACTTTAAAACAAAGTTTTTAGAGAAACGGCAAGAAAAATAGTTTAGAAAACAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATMAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATTTTTGTGACCTTTGACTTTTCATTTCTTGTTTTCCAATTTTAACATTTTCAAAATTTGATTTCTCTCTCGAAAAAATCAAAAATAGAGTCACGTGGTATTTTTCAAATATTGCTTATAATTTCGTTAAAAATGGACAGGATCTAGAAAATCCAAAAAAATTAGGTCATGATCGATCTTCACTAGATTGATTTTCTCTATGTTGATCTCGTGAGGGATTCTATCTAGAACTTCCGTTATAACTTTTGTGCCATATCCTTCTTCTGATCAATAAAAAAATACCTAGGGAATTCAAAAAATTAGGTCGTGACCTACCAAACCCAAACAATTAGGTTATGACCTATGAAACTAGGTCAACGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAATTTAAAATGAGTGAAGCAC</pcr_primer_p1>
		<pcr_primer_p2>AATAAATTTTTCCGAGAATTACC</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>CAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATT</canonical_amplicon>
		<polymorphic_amplicon>CAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATMAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37513</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>18191</contig_pos>
        <strand>+</strand>
        <context>mragrtatma[A/T]aaatgtgtca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCA</left_flank>
        <right_flank>AAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATACAGTTTTTTTCAACAAAAATTACCTTCTAGTTGCGATATCTCCCAAGAACTTGACATTAAAAACGTTGACTTGAATTTTATTTATCTGAAAAATTTAAATTATGACAAGAATTCAAAGAATAAATTACCTGATAAGTATCGTACTCTTTTTTTTCGAGAACATCGTCTGTTATTGTTTCCAAAAAATGCTCCAAAGATTGAAAGGATGCAACTTTAAAACAAAGTTTTTAGAGAAACGGCAAGAAAAATAGTTTAGAAAACAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATTTTTGTGACCTTTGACTTTTCATTTCTTGTTTTCCAATTTTAACATTTTCAAAATTTGATTTCTCTCTCGAAAAAATCAAAAATAGAGTCACGTGGTATTTTTCAAATATTGCTTATAATTTCGTTAAAAATGGACAGGATCTAGAAAATCCAAAAAAATTAGGTCATGATCGATCTTCACTAGATTGATTTTCTCTATGTTGATCTCGTGAGGGATTCTATCTAGAACTTCCGTTATAACTTTTGTGCCATATCCTTCTTCTGATCAATAAAAAAATACCTAGGGAATTCAAAAAATTAGGTCGTGACCTACCAAACCCAAACAATTAGGTTATGACCTATGAAACTAGGTCAACGCCT</canonical>
            <polymorphic>AAAATACAGTTTTTTTCAACAAAAATTACCTTCTAGTTGCGATATCTCCCAAGAACTTGACATTAAAAACGTTGACTTGAATTTTATTTATCTGAAAAATTTAAATTATGACAAGAATTCAAAGAATAAATTACCTGATAAGTATCGTACTCTTTTTTTTCGAGAACATCGTCTGTTATTGTTTCCAAAAAATGCTCCAAAGATTGAAAGGATGCAACTTTAAAACAAAGTTTTTAGAGAAACGGCAAGAAAAATAGTTTAGAAAACAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAWAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATTTTTGTGACCTTTGACTTTTCATTTCTTGTTTTCCAATTTTAACATTTTCAAAATTTGATTTCTCTCTCGAAAAAATCAAAAATAGAGTCACGTGGTATTTTTCAAATATTGCTTATAATTTCGTTAAAAATGGACAGGATCTAGAAAATCCAAAAAAATTAGGTCATGATCGATCTTCACTAGATTGATTTTCTCTATGTTGATCTCGTGAGGGATTCTATCTAGAACTTCCGTTATAACTTTTGTGCCATATCCTTCTTCTGATCAATAAAAAAATACCTAGGGAATTCAAAAAATTAGGTCGTGACCTACCAAACCCAAACAATTAGGTTATGACCTATGAAACTAGGTCAACGCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAATTTAAAATGAGTGAAGCAC</pcr_primer_p1>
		<pcr_primer_p2>AATAAATTTTTCCGAGAATTACC</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>CAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATT</canonical_amplicon>
		<polymorphic_amplicon>CAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAWAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37514</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>18222</contig_pos>
        <strand>+</strand>
        <context>tgtttgtgat[A/G]ttatgataaa</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGAT</left_flank>
        <right_flank>TTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAGTTGCGATATCTCCCAAGAACTTGACATTAAAAACGTTGACTTGAATTTTATTTATCTGAAAAATTTAAATTATGACAAGAATTCAAAGAATAAATTACCTGATAAGTATCGTACTCTTTTTTTTCGAGAACATCGTCTGTTATTGTTTCCAAAAAATGCTCCAAAGATTGAAAGGATGCAACTTTAAAACAAAGTTTTTAGAGAAACGGCAAGAAAAATAGTTTAGAAAACAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATTTTTGTGACCTTTGACTTTTCATTTCTTGTTTTCCAATTTTAACATTTTCAAAATTTGATTTCTCTCTCGAAAAAATCAAAAATAGAGTCACGTGGTATTTTTCAAATATTGCTTATAATTTCGTTAAAAATGGACAGGATCTAGAAAATCCAAAAAAATTAGGTCATGATCGATCTTCACTAGATTGATTTTCTCTATGTTGATCTCGTGAGGGATTCTATCTAGAACTTCCGTTATAACTTTTGTGCCATATCCTTCTTCTGATCAATAAAAAAATACCTAGGGAATTCAAAAAATTAGGTCGTGACCTACCAAACCCAAACAATTAGGTTATGACCTATGAAACTAGGTCAACGCCTAGAAAATCCAGAAAAAGAGGTCATGATCTAA</canonical>
            <polymorphic>TCTAGTTGCGATATCTCCCAAGAACTTGACATTAAAAACGTTGACTTGAATTTTATTTATCTGAAAAATTTAAATTATGACAAGAATTCAAAGAATAAATTACCTGATAAGTATCGTACTCTTTTTTTTCGAGAACATCGTCTGTTATTGTTTCCAAAAAATGCTCCAAAGATTGAAAGGATGCAACTTTAAAACAAAGTTTTTAGAGAAACGGCAAGAAAAATAGTTTAGAAAACAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATRTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATTTTTGTGACCTTTGACTTTTCATTTCTTGTTTTCCAATTTTAACATTTTCAAAATTTGATTTCTCTCTCGAAAAAATCAAAAATAGAGTCACGTGGTATTTTTCAAATATTGCTTATAATTTCGTTAAAAATGGACAGGATCTAGAAAATCCAAAAAAATTAGGTCATGATCGATCTTCACTAGATTGATTTTCTCTATGTTGATCTCGTGAGGGATTCTATCTAGAACTTCCGTTATAACTTTTGTGCCATATCCTTCTTCTGATCAATAAAAAAATACCTAGGGAATTCAAAAAATTAGGTCGTGACCTACCAAACCCAAACAATTAGGTTATGACCTATGAAACTAGGTCAACGCCTAGAAAATCCAGAAAAAGAGGTCATGATCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAATTTAAAATGAGTGAAGCAC</pcr_primer_p1>
		<pcr_primer_p2>AATAAATTTTTCCGAGAATTACC</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>CAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATT</canonical_amplicon>
		<polymorphic_amplicon>CAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATRTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37515</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>18243</contig_pos>
        <strand>+</strand>
        <context>cattttatca[C/G]ttratcactt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCA</left_flank>
        <right_flank>TTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACTTGACATTAAAAACGTTGACTTGAATTTTATTTATCTGAAAAATTTAAATTATGACAAGAATTCAAAGAATAAATTACCTGATAAGTATCGTACTCTTTTTTTTCGAGAACATCGTCTGTTATTGTTTCCAAAAAATGCTCCAAAGATTGAAAGGATGCAACTTTAAAACAAAGTTTTTAGAGAAACGGCAAGAAAAATAGTTTAGAAAACAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATTTTTGTGACCTTTGACTTTTCATTTCTTGTTTTCCAATTTTAACATTTTCAAAATTTGATTTCTCTCTCGAAAAAATCAAAAATAGAGTCACGTGGTATTTTTCAAATATTGCTTATAATTTCGTTAAAAATGGACAGGATCTAGAAAATCCAAAAAAATTAGGTCATGATCGATCTTCACTAGATTGATTTTCTCTATGTTGATCTCGTGAGGGATTCTATCTAGAACTTCCGTTATAACTTTTGTGCCATATCCTTCTTCTGATCAATAAAAAAATACCTAGGGAATTCAAAAAATTAGGTCGTGACCTACCAAACCCAAACAATTAGGTTATGACCTATGAAACTAGGTCAACGCCTAGAAAATCCAGAAAAAGAGGTCATGATCTAAAAATCTAAAAAATAAGGTCAT</canonical>
            <polymorphic>GAACTTGACATTAAAAACGTTGACTTGAATTTTATTTATCTGAAAAATTTAAATTATGACAAGAATTCAAAGAATAAATTACCTGATAAGTATCGTACTCTTTTTTTTCGAGAACATCGTCTGTTATTGTTTCCAAAAAATGCTCCAAAGATTGAAAGGATGCAACTTTAAAACAAAGTTTTTAGAGAAACGGCAAGAAAAATAGTTTAGAAAACAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCASTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATTTTTGTGACCTTTGACTTTTCATTTCTTGTTTTCCAATTTTAACATTTTCAAAATTTGATTTCTCTCTCGAAAAAATCAAAAATAGAGTCACGTGGTATTTTTCAAATATTGCTTATAATTTCGTTAAAAATGGACAGGATCTAGAAAATCCAAAAAAATTAGGTCATGATCGATCTTCACTAGATTGATTTTCTCTATGTTGATCTCGTGAGGGATTCTATCTAGAACTTCCGTTATAACTTTTGTGCCATATCCTTCTTCTGATCAATAAAAAAATACCTAGGGAATTCAAAAAATTAGGTCGTGACCTACCAAACCCAAACAATTAGGTTATGACCTATGAAACTAGGTCAACGCCTAGAAAATCCAGAAAAAGAGGTCATGATCTAAAAATCTAAAAAATAAGGTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>231 205 105 85 84 59 55 37 31 31 23 21 14 8 5 4 2</canonical_bands>
                <polymorphic_bands>231 205 105 85 84 59 55 37 31 31 31 21 14 5 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATTTAAAATGAGTGAAGCAC</pcr_primer_p1>
		<pcr_primer_p2>AATAAATTTTTCCGAGAATTACC</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>CAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATT</canonical_amplicon>
		<polymorphic_amplicon>CAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCASTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37516</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>18246</contig_pos>
        <strand>+</strand>
        <context>tttatcastt[A/G]atcacttttt</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTT</left_flank>
        <right_flank>ATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTGACATTAAAAACGTTGACTTGAATTTTATTTATCTGAAAAATTTAAATTATGACAAGAATTCAAAGAATAAATTACCTGATAAGTATCGTACTCTTTTTTTTCGAGAACATCGTCTGTTATTGTTTCCAAAAAATGCTCCAAAGATTGAAAGGATGCAACTTTAAAACAAAGTTTTTAGAGAAACGGCAAGAAAAATAGTTTAGAAAACAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATTTTTGTGACCTTTGACTTTTCATTTCTTGTTTTCCAATTTTAACATTTTCAAAATTTGATTTCTCTCTCGAAAAAATCAAAAATAGAGTCACGTGGTATTTTTCAAATATTGCTTATAATTTCGTTAAAAATGGACAGGATCTAGAAAATCCAAAAAAATTAGGTCATGATCGATCTTCACTAGATTGATTTTCTCTATGTTGATCTCGTGAGGGATTCTATCTAGAACTTCCGTTATAACTTTTGTGCCATATCCTTCTTCTGATCAATAAAAAAATACCTAGGGAATTCAAAAAATTAGGTCGTGACCTACCAAACCCAAACAATTAGGTTATGACCTATGAAACTAGGTCAACGCCTAGAAAATCCAGAAAAAGAGGTCATGATCTAAAAATCTAAAAAATAAGGTCATGAC</canonical>
            <polymorphic>CTTGACATTAAAAACGTTGACTTGAATTTTATTTATCTGAAAAATTTAAATTATGACAAGAATTCAAAGAATAAATTACCTGATAAGTATCGTACTCTTTTTTTTCGAGAACATCGTCTGTTATTGTTTCCAAAAAATGCTCCAAAGATTGAAAGGATGCAACTTTAAAACAAAGTTTTTAGAGAAACGGCAAGAAAAATAGTTTAGAAAACAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTRATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATTTTTGTGACCTTTGACTTTTCATTTCTTGTTTTCCAATTTTAACATTTTCAAAATTTGATTTCTCTCTCGAAAAAATCAAAAATAGAGTCACGTGGTATTTTTCAAATATTGCTTATAATTTCGTTAAAAATGGACAGGATCTAGAAAATCCAAAAAAATTAGGTCATGATCGATCTTCACTAGATTGATTTTCTCTATGTTGATCTCGTGAGGGATTCTATCTAGAACTTCCGTTATAACTTTTGTGCCATATCCTTCTTCTGATCAATAAAAAAATACCTAGGGAATTCAAAAAATTAGGTCGTGACCTACCAAACCCAAACAATTAGGTTATGACCTATGAAACTAGGTCAACGCCTAGAAAATCCAGAAAAAGAGGTCATGATCTAAAAATCTAAAAAATAAGGTCATGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>499 349 152</canonical_bands>
                <polymorphic_bands>848 152</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>277 224 222 121 61 31 30 30 4</canonical_bands>
                <polymorphic_bands>446 277 121 61 31 30 30 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATTTAAAATGAGTGAAGCAC</pcr_primer_p1>
		<pcr_primer_p2>AATAAATTTTTCCGAGAATTACC</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>CAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTGATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATT</canonical_amplicon>
		<polymorphic_amplicon>CAAATTTAAAATGAGTGAAGCACGCGCCGCATAACACGCAGCGCCGTCAAATTCCGGCCAAAATCCGATCATTGCCCGTCCCATTGCTGCAGCTTCTGACCAAAAGCTGAACAAGATTCGTCCAAAAGCCGAACCCCCTCAACTTCCGGCCAGAAGCTGCAAGCCGACAGCCGAGGCTGTAATGGAAAGTTTAAGTTTGAGCTCAATTATCTCGGTTCTTCTGCAAGGTATCAAAAATGTGTCAACTGATAAAATGTTTGTGATGTTATGATAAACATTTTATCACTTRATCACTTTTTCATATCTTTCATAGGAACCTAGATAAATTGGCTCATAATATTGAATGTGTGACGGTAATTCTCGGAAAAATTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37517</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>20688</contig_pos>
        <strand>+</strand>
        <context>actgataaaa[C/T]rttkgtgata</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAA</left_flank>
        <right_flank>ATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATTAAAAACCTTCTGAAATCTCTTCCAAAGTCCAGTTTACTGCAGTTCAAACCACTAGCTATAATTTTCTCTTTCCTTCGATTCACCCCTTAATTATTCTAGAATTTTCTCGTTTTTCTGATATTTCCAATTTCAAGGAAGTCAATTTTTCTCAAAATTTCAGTTTTGAACATTTTTCTGAAAAATAATATGACTTCGAATTCCAACGAGACCATCTTATTCAAATGTGATAACTCTTACAATACATTTATCGAAATACTGAAATATTTGGGTACTGTATTCTACCTGTCCATCGGATTTATTCTCCATATTTTTTTAATGAAAACAATTTTGATTTCTCAGAAATCATTTTTCAAAGATAACTCATATTTTCAGCTTCATGTCGTGGATTCTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGTTCTCTTCTAATCCTTGGCGATGTATTTAACACTCGTCTATTCATGTATGTCCCGCCTCTTTGTCCCATCGCTGGCCCATTTTTCTTAAAATCCCCTTATTTTTCGAAATTCTTGTACGTCCTCATAAATCACTGTAGATTCGCAAAATCGGTCGTTCAAATCTTTATGGTTTCAAATCGAA</canonical>
            <polymorphic>ATTATTAAAAACCTTCTGAAATCTCTTCCAAAGTCCAGTTTACTGCAGTTCAAACCACTAGCTATAATTTTCTCTTTCCTTCGATTCACCCCTTAATTATTCTAGAATTTTCTCGTTTTTCTGATATTTCCAATTTCAAGGAAGTCAATTTTTCTCAAAATTTCAGTTTTGAACATTTTTCTGAAAAATAATATGACTTCGAATTCCAACGAGACCATCTTATTCAAATGTGATAACTCTTACAATACATTTATCGAAATACTGAAATATTTGGGTACTGTATTCTACCTGTCCATCGGATTTATTCTCCATATTTTTTTAATGAAAACAATTTTGATTTCTCAGAAATCATTTTTCAAAGATAACTCATATTTTCAGCTTCATGTCGTGGATTCTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAAYATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGTTCTCTTCTAATCCTTGGCGATGTATTTAACACTCGTCTATTCATGTATGTCCCGCCTCTTTGTCCCATCGCTGGCCCATTTTTCTTAAAATCCCCTTATTTTTCGAAATTCTTGTACGTCCTCATAAATCACTGTAGATTCGCAAAATCGGTCGTTCAAATCTTTATGGTTTCAAATCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATAGCGGTACGAATACATTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTCTGGAAATGGACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>CTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGT</canonical_amplicon>
		<polymorphic_amplicon>CTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAAYATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37518</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>20689</contig_pos>
        <strand>+</strand>
        <context>ctgataaaay[A/G]ttkgtgatat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAAC</left_flank>
        <right_flank>TTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATTAAAAACCTTCTGAAATCTCTTCCAAAGTCCAGTTTACTGCAGTTCAAACCACTAGCTATAATTTTCTCTTTCCTTCGATTCACCCCTTAATTATTCTAGAATTTTCTCGTTTTTCTGATATTTCCAATTTCAAGGAAGTCAATTTTTCTCAAAATTTCAGTTTTGAACATTTTTCTGAAAAATAATATGACTTCGAATTCCAACGAGACCATCTTATTCAAATGTGATAACTCTTACAATACATTTATCGAAATACTGAAATATTTGGGTACTGTATTCTACCTGTCCATCGGATTTATTCTCCATATTTTTTTAATGAAAACAATTTTGATTTCTCAGAAATCATTTTTCAAAGATAACTCATATTTTCAGCTTCATGTCGTGGATTCTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGTTCTCTTCTAATCCTTGGCGATGTATTTAACACTCGTCTATTCATGTATGTCCCGCCTCTTTGTCCCATCGCTGGCCCATTTTTCTTAAAATCCCCTTATTTTTCGAAATTCTTGTACGTCCTCATAAATCACTGTAGATTCGCAAAATCGGTCGTTCAAATCTTTATGGTTTCAAATCGAAT</canonical>
            <polymorphic>TTATTAAAAACCTTCTGAAATCTCTTCCAAAGTCCAGTTTACTGCAGTTCAAACCACTAGCTATAATTTTCTCTTTCCTTCGATTCACCCCTTAATTATTCTAGAATTTTCTCGTTTTTCTGATATTTCCAATTTCAAGGAAGTCAATTTTTCTCAAAATTTCAGTTTTGAACATTTTTCTGAAAAATAATATGACTTCGAATTCCAACGAGACCATCTTATTCAAATGTGATAACTCTTACAATACATTTATCGAAATACTGAAATATTTGGGTACTGTATTCTACCTGTCCATCGGATTTATTCTCCATATTTTTTTAATGAAAACAATTTTGATTTCTCAGAAATCATTTTTCAAAGATAACTCATATTTTCAGCTTCATGTCGTGGATTCTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACRTTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGTTCTCTTCTAATCCTTGGCGATGTATTTAACACTCGTCTATTCATGTATGTCCCGCCTCTTTGTCCCATCGCTGGCCCATTTTTCTTAAAATCCCCTTATTTTTCGAAATTCTTGTACGTCCTCATAAATCACTGTAGATTCGCAAAATCGGTCGTTCAAATCTTTATGGTTTCAAATCGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATAGCGGTACGAATACATTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTCTGGAAATGGACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>CTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGT</canonical_amplicon>
		<polymorphic_amplicon>CTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACRTTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37519</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>20692</contig_pos>
        <strand>+</strand>
        <context>ataaaayrtt[G/T]gtgatattrt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATT</left_flank>
        <right_flank>GTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAAACCTTCTGAAATCTCTTCCAAAGTCCAGTTTACTGCAGTTCAAACCACTAGCTATAATTTTCTCTTTCCTTCGATTCACCCCTTAATTATTCTAGAATTTTCTCGTTTTTCTGATATTTCCAATTTCAAGGAAGTCAATTTTTCTCAAAATTTCAGTTTTGAACATTTTTCTGAAAAATAATATGACTTCGAATTCCAACGAGACCATCTTATTCAAATGTGATAACTCTTACAATACATTTATCGAAATACTGAAATATTTGGGTACTGTATTCTACCTGTCCATCGGATTTATTCTCCATATTTTTTTAATGAAAACAATTTTGATTTCTCAGAAATCATTTTTCAAAGATAACTCATATTTTCAGCTTCATGTCGTGGATTCTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGTTCTCTTCTAATCCTTGGCGATGTATTTAACACTCGTCTATTCATGTATGTCCCGCCTCTTTGTCCCATCGCTGGCCCATTTTTCTTAAAATCCCCTTATTTTTCGAAATTCTTGTACGTCCTCATAAATCACTGTAGATTCGCAAAATCGGTCGTTCAAATCTTTATGGTTTCAAATCGAATGAC</canonical>
            <polymorphic>TTAAAAACCTTCTGAAATCTCTTCCAAAGTCCAGTTTACTGCAGTTCAAACCACTAGCTATAATTTTCTCTTTCCTTCGATTCACCCCTTAATTATTCTAGAATTTTCTCGTTTTTCTGATATTTCCAATTTCAAGGAAGTCAATTTTTCTCAAAATTTCAGTTTTGAACATTTTTCTGAAAAATAATATGACTTCGAATTCCAACGAGACCATCTTATTCAAATGTGATAACTCTTACAATACATTTATCGAAATACTGAAATATTTGGGTACTGTATTCTACCTGTCCATCGGATTTATTCTCCATATTTTTTTAATGAAAACAATTTTGATTTCTCAGAAATCATTTTTCAAAGATAACTCATATTTTCAGCTTCATGTCGTGGATTCTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTKGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGTTCTCTTCTAATCCTTGGCGATGTATTTAACACTCGTCTATTCATGTATGTCCCGCCTCTTTGTCCCATCGCTGGCCCATTTTTCTTAAAATCCCCTTATTTTTCGAAATTCTTGTACGTCCTCATAAATCACTGTAGATTCGCAAAATCGGTCGTTCAAATCTTTATGGTTTCAAATCGAATGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATAGCGGTACGAATACATTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTCTGGAAATGGACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>CTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGT</canonical_amplicon>
		<polymorphic_amplicon>CTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTKGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37520</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>20701</contig_pos>
        <strand>+</strand>
        <context>tkgtgatatt[A/G]tgataaacat</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATT</left_flank>
        <right_flank>TGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGAAATCTCTTCCAAAGTCCAGTTTACTGCAGTTCAAACCACTAGCTATAATTTTCTCTTTCCTTCGATTCACCCCTTAATTATTCTAGAATTTTCTCGTTTTTCTGATATTTCCAATTTCAAGGAAGTCAATTTTTCTCAAAATTTCAGTTTTGAACATTTTTCTGAAAAATAATATGACTTCGAATTCCAACGAGACCATCTTATTCAAATGTGATAACTCTTACAATACATTTATCGAAATACTGAAATATTTGGGTACTGTATTCTACCTGTCCATCGGATTTATTCTCCATATTTTTTTAATGAAAACAATTTTGATTTCTCAGAAATCATTTTTCAAAGATAACTCATATTTTCAGCTTCATGTCGTGGATTCTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGTTCTCTTCTAATCCTTGGCGATGTATTTAACACTCGTCTATTCATGTATGTCCCGCCTCTTTGTCCCATCGCTGGCCCATTTTTCTTAAAATCCCCTTATTTTTCGAAATTCTTGTACGTCCTCATAAATCACTGTAGATTCGCAAAATCGGTCGTTCAAATCTTTATGGTTTCAAATCGAATGACTTGCGTTTT</canonical>
            <polymorphic>TTCTGAAATCTCTTCCAAAGTCCAGTTTACTGCAGTTCAAACCACTAGCTATAATTTTCTCTTTCCTTCGATTCACCCCTTAATTATTCTAGAATTTTCTCGTTTTTCTGATATTTCCAATTTCAAGGAAGTCAATTTTTCTCAAAATTTCAGTTTTGAACATTTTTCTGAAAAATAATATGACTTCGAATTCCAACGAGACCATCTTATTCAAATGTGATAACTCTTACAATACATTTATCGAAATACTGAAATATTTGGGTACTGTATTCTACCTGTCCATCGGATTTATTCTCCATATTTTTTTAATGAAAACAATTTTGATTTCTCAGAAATCATTTTTCAAAGATAACTCATATTTTCAGCTTCATGTCGTGGATTCTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTRTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGTTCTCTTCTAATCCTTGGCGATGTATTTAACACTCGTCTATTCATGTATGTCCCGCCTCTTTGTCCCATCGCTGGCCCATTTTTCTTAAAATCCCCTTATTTTTCGAAATTCTTGTACGTCCTCATAAATCACTGTAGATTCGCAAAATCGGTCGTTCAAATCTTTATGGTTTCAAATCGAATGACTTGCGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>158 144 100 83 80 69 63 56 53 47 44 43 31 21 8</canonical_bands>
                <polymorphic_bands>158 144 100 83 80 77 63 56 53 47 44 43 31 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATAGCGGTACGAATACATTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTCTGGAAATGGACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>CTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGT</canonical_amplicon>
		<polymorphic_amplicon>CTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTRTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37521</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>20725</contig_pos>
        <strand>+</strand>
        <context>atcagttaat[C/T]actttwtsat</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAAT</left_flank>
        <right_flank>ACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTACTGCAGTTCAAACCACTAGCTATAATTTTCTCTTTCCTTCGATTCACCCCTTAATTATTCTAGAATTTTCTCGTTTTTCTGATATTTCCAATTTCAAGGAAGTCAATTTTTCTCAAAATTTCAGTTTTGAACATTTTTCTGAAAAATAATATGACTTCGAATTCCAACGAGACCATCTTATTCAAATGTGATAACTCTTACAATACATTTATCGAAATACTGAAATATTTGGGTACTGTATTCTACCTGTCCATCGGATTTATTCTCCATATTTTTTTAATGAAAACAATTTTGATTTCTCAGAAATCATTTTTCAAAGATAACTCATATTTTCAGCTTCATGTCGTGGATTCTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGTTCTCTTCTAATCCTTGGCGATGTATTTAACACTCGTCTATTCATGTATGTCCCGCCTCTTTGTCCCATCGCTGGCCCATTTTTCTTAAAATCCCCTTATTTTTCGAAATTCTTGTACGTCCTCATAAATCACTGTAGATTCGCAAAATCGGTCGTTCAAATCTTTATGGTTTCAAATCGAATGACTTGCGTTTTGTGGCCAGTTGCTTATAATCAGGT</canonical>
            <polymorphic>GTTTACTGCAGTTCAAACCACTAGCTATAATTTTCTCTTTCCTTCGATTCACCCCTTAATTATTCTAGAATTTTCTCGTTTTTCTGATATTTCCAATTTCAAGGAAGTCAATTTTTCTCAAAATTTCAGTTTTGAACATTTTTCTGAAAAATAATATGACTTCGAATTCCAACGAGACCATCTTATTCAAATGTGATAACTCTTACAATACATTTATCGAAATACTGAAATATTTGGGTACTGTATTCTACCTGTCCATCGGATTTATTCTCCATATTTTTTTAATGAAAACAATTTTGATTTCTCAGAAATCATTTTTCAAAGATAACTCATATTTTCAGCTTCATGTCGTGGATTCTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATYACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGTTCTCTTCTAATCCTTGGCGATGTATTTAACACTCGTCTATTCATGTATGTCCCGCCTCTTTGTCCCATCGCTGGCCCATTTTTCTTAAAATCCCCTTATTTTTCGAAATTCTTGTACGTCCTCATAAATCACTGTAGATTCGCAAAATCGGTCGTTCAAATCTTTATGGTTTCAAATCGAATGACTTGCGTTTTGTGGCCAGTTGCTTATAATCAGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>185 128 120 112 88 84 47 43 42 30 29 28 26 15 12 11</canonical_bands>
                <polymorphic_bands>185 172 128 120 112 47 43 42 30 29 28 26 15 12 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATAGCGGTACGAATACATTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTCTGGAAATGGACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>CTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGT</canonical_amplicon>
		<polymorphic_amplicon>CTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATYACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37522</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>20731</contig_pos>
        <strand>+</strand>
        <context>taatyacttt[A/T]tsatacttct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTT</left_flank>
        <right_flank>TGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCAGTTCAAACCACTAGCTATAATTTTCTCTTTCCTTCGATTCACCCCTTAATTATTCTAGAATTTTCTCGTTTTTCTGATATTTCCAATTTCAAGGAAGTCAATTTTTCTCAAAATTTCAGTTTTGAACATTTTTCTGAAAAATAATATGACTTCGAATTCCAACGAGACCATCTTATTCAAATGTGATAACTCTTACAATACATTTATCGAAATACTGAAATATTTGGGTACTGTATTCTACCTGTCCATCGGATTTATTCTCCATATTTTTTTAATGAAAACAATTTTGATTTCTCAGAAATCATTTTTCAAAGATAACTCATATTTTCAGCTTCATGTCGTGGATTCTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGTTCTCTTCTAATCCTTGGCGATGTATTTAACACTCGTCTATTCATGTATGTCCCGCCTCTTTGTCCCATCGCTGGCCCATTTTTCTTAAAATCCCCTTATTTTTCGAAATTCTTGTACGTCCTCATAAATCACTGTAGATTCGCAAAATCGGTCGTTCAAATCTTTATGGTTTCAAATCGAATGACTTGCGTTTTGTGGCCAGTTGCTTATAATCAGGTACAGAT</canonical>
            <polymorphic>TGCAGTTCAAACCACTAGCTATAATTTTCTCTTTCCTTCGATTCACCCCTTAATTATTCTAGAATTTTCTCGTTTTTCTGATATTTCCAATTTCAAGGAAGTCAATTTTTCTCAAAATTTCAGTTTTGAACATTTTTCTGAAAAATAATATGACTTCGAATTCCAACGAGACCATCTTATTCAAATGTGATAACTCTTACAATACATTTATCGAAATACTGAAATATTTGGGTACTGTATTCTACCTGTCCATCGGATTTATTCTCCATATTTTTTTAATGAAAACAATTTTGATTTCTCAGAAATCATTTTTCAAAGATAACTCATATTTTCAGCTTCATGTCGTGGATTCTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTWTGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGTTCTCTTCTAATCCTTGGCGATGTATTTAACACTCGTCTATTCATGTATGTCCCGCCTCTTTGTCCCATCGCTGGCCCATTTTTCTTAAAATCCCCTTATTTTTCGAAATTCTTGTACGTCCTCATAAATCACTGTAGATTCGCAAAATCGGTCGTTCAAATCTTTATGGTTTCAAATCGAATGACTTGCGTTTTGTGGCCAGTTGCTTATAATCAGGTACAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATAGCGGTACGAATACATTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTCTGGAAATGGACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>CTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGT</canonical_amplicon>
		<polymorphic_amplicon>CTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTWTGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37523</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>20733</contig_pos>
        <strand>+</strand>
        <context>atyactttwt[C/G]atacttctgs</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTAT</left_flank>
        <right_flank>ATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTTCAAACCACTAGCTATAATTTTCTCTTTCCTTCGATTCACCCCTTAATTATTCTAGAATTTTCTCGTTTTTCTGATATTTCCAATTTCAAGGAAGTCAATTTTTCTCAAAATTTCAGTTTTGAACATTTTTCTGAAAAATAATATGACTTCGAATTCCAACGAGACCATCTTATTCAAATGTGATAACTCTTACAATACATTTATCGAAATACTGAAATATTTGGGTACTGTATTCTACCTGTCCATCGGATTTATTCTCCATATTTTTTTAATGAAAACAATTTTGATTTCTCAGAAATCATTTTTCAAAGATAACTCATATTTTCAGCTTCATGTCGTGGATTCTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGTTCTCTTCTAATCCTTGGCGATGTATTTAACACTCGTCTATTCATGTATGTCCCGCCTCTTTGTCCCATCGCTGGCCCATTTTTCTTAAAATCCCCTTATTTTTCGAAATTCTTGTACGTCCTCATAAATCACTGTAGATTCGCAAAATCGGTCGTTCAAATCTTTATGGTTTCAAATCGAATGACTTGCGTTTTGTGGCCAGTTGCTTATAATCAGGTACAGATTT</canonical>
            <polymorphic>CAGTTCAAACCACTAGCTATAATTTTCTCTTTCCTTCGATTCACCCCTTAATTATTCTAGAATTTTCTCGTTTTTCTGATATTTCCAATTTCAAGGAAGTCAATTTTTCTCAAAATTTCAGTTTTGAACATTTTTCTGAAAAATAATATGACTTCGAATTCCAACGAGACCATCTTATTCAAATGTGATAACTCTTACAATACATTTATCGAAATACTGAAATATTTGGGTACTGTATTCTACCTGTCCATCGGATTTATTCTCCATATTTTTTTAATGAAAACAATTTTGATTTCTCAGAAATCATTTTTCAAAGATAACTCATATTTTCAGCTTCATGTCGTGGATTCTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATSATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGTTCTCTTCTAATCCTTGGCGATGTATTTAACACTCGTCTATTCATGTATGTCCCGCCTCTTTGTCCCATCGCTGGCCCATTTTTCTTAAAATCCCCTTATTTTTCGAAATTCTTGTACGTCCTCATAAATCACTGTAGATTCGCAAAATCGGTCGTTCAAATCTTTATGGTTTCAAATCGAATGACTTGCGTTTTGTGGCCAGTTGCTTATAATCAGGTACAGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATAGCGGTACGAATACATTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTCTGGAAATGGACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>CTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGT</canonical_amplicon>
		<polymorphic_amplicon>CTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATSATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37524</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>20743</contig_pos>
        <strand>+</strand>
        <context>satacttctg[C/G]raggaaccgk</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTG</left_flank>
        <right_flank>TAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTAGCTATAATTTTCTCTTTCCTTCGATTCACCCCTTAATTATTCTAGAATTTTCTCGTTTTTCTGATATTTCCAATTTCAAGGAAGTCAATTTTTCTCAAAATTTCAGTTTTGAACATTTTTCTGAAAAATAATATGACTTCGAATTCCAACGAGACCATCTTATTCAAATGTGATAACTCTTACAATACATTTATCGAAATACTGAAATATTTGGGTACTGTATTCTACCTGTCCATCGGATTTATTCTCCATATTTTTTTAATGAAAACAATTTTGATTTCTCAGAAATCATTTTTCAAAGATAACTCATATTTTCAGCTTCATGTCGTGGATTCTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGTTCTCTTCTAATCCTTGGCGATGTATTTAACACTCGTCTATTCATGTATGTCCCGCCTCTTTGTCCCATCGCTGGCCCATTTTTCTTAAAATCCCCTTATTTTTCGAAATTCTTGTACGTCCTCATAAATCACTGTAGATTCGCAAAATCGGTCGTTCAAATCTTTATGGTTTCAAATCGAATGACTTGCGTTTTGTGGCCAGTTGCTTATAATCAGGTACAGATTTCCAGACTTTT</canonical>
            <polymorphic>CACTAGCTATAATTTTCTCTTTCCTTCGATTCACCCCTTAATTATTCTAGAATTTTCTCGTTTTTCTGATATTTCCAATTTCAAGGAAGTCAATTTTTCTCAAAATTTCAGTTTTGAACATTTTTCTGAAAAATAATATGACTTCGAATTCCAACGAGACCATCTTATTCAAATGTGATAACTCTTACAATACATTTATCGAAATACTGAAATATTTGGGTACTGTATTCTACCTGTCCATCGGATTTATTCTCCATATTTTTTTAATGAAAACAATTTTGATTTCTCAGAAATCATTTTTCAAAGATAACTCATATTTTCAGCTTCATGTCGTGGATTCTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGSTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGTTCTCTTCTAATCCTTGGCGATGTATTTAACACTCGTCTATTCATGTATGTCCCGCCTCTTTGTCCCATCGCTGGCCCATTTTTCTTAAAATCCCCTTATTTTTCGAAATTCTTGTACGTCCTCATAAATCACTGTAGATTCGCAAAATCGGTCGTTCAAATCTTTATGGTTTCAAATCGAATGACTTGCGTTTTGTGGCCAGTTGCTTATAATCAGGTACAGATTTCCAGACTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATAGCGGTACGAATACATTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTCTGGAAATGGACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>CTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGT</canonical_amplicon>
		<polymorphic_amplicon>CTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGSTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37525</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>20744</contig_pos>
        <strand>+</strand>
        <context>atacttctgs[A/G]aggaaccgkg</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGG</left_flank>
        <right_flank>AGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTAGCTATAATTTTCTCTTTCCTTCGATTCACCCCTTAATTATTCTAGAATTTTCTCGTTTTTCTGATATTTCCAATTTCAAGGAAGTCAATTTTTCTCAAAATTTCAGTTTTGAACATTTTTCTGAAAAATAATATGACTTCGAATTCCAACGAGACCATCTTATTCAAATGTGATAACTCTTACAATACATTTATCGAAATACTGAAATATTTGGGTACTGTATTCTACCTGTCCATCGGATTTATTCTCCATATTTTTTTAATGAAAACAATTTTGATTTCTCAGAAATCATTTTTCAAAGATAACTCATATTTTCAGCTTCATGTCGTGGATTCTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGTTCTCTTCTAATCCTTGGCGATGTATTTAACACTCGTCTATTCATGTATGTCCCGCCTCTTTGTCCCATCGCTGGCCCATTTTTCTTAAAATCCCCTTATTTTTCGAAATTCTTGTACGTCCTCATAAATCACTGTAGATTCGCAAAATCGGTCGTTCAAATCTTTATGGTTTCAAATCGAATGACTTGCGTTTTGTGGCCAGTTGCTTATAATCAGGTACAGATTTCCAGACTTTTC</canonical>
            <polymorphic>ACTAGCTATAATTTTCTCTTTCCTTCGATTCACCCCTTAATTATTCTAGAATTTTCTCGTTTTTCTGATATTTCCAATTTCAAGGAAGTCAATTTTTCTCAAAATTTCAGTTTTGAACATTTTTCTGAAAAATAATATGACTTCGAATTCCAACGAGACCATCTTATTCAAATGTGATAACTCTTACAATACATTTATCGAAATACTGAAATATTTGGGTACTGTATTCTACCTGTCCATCGGATTTATTCTCCATATTTTTTTAATGAAAACAATTTTGATTTCTCAGAAATCATTTTTCAAAGATAACTCATATTTTCAGCTTCATGTCGTGGATTCTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGRAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGTTCTCTTCTAATCCTTGGCGATGTATTTAACACTCGTCTATTCATGTATGTCCCGCCTCTTTGTCCCATCGCTGGCCCATTTTTCTTAAAATCCCCTTATTTTTCGAAATTCTTGTACGTCCTCATAAATCACTGTAGATTCGCAAAATCGGTCGTTCAAATCTTTATGGTTTCAAATCGAATGACTTGCGTTTTGTGGCCAGTTGCTTATAATCAGGTACAGATTTCCAGACTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATAGCGGTACGAATACATTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTCTGGAAATGGACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>CTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGT</canonical_amplicon>
		<polymorphic_amplicon>CTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGRAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37526</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>20753</contig_pos>
        <strand>+</strand>
        <context>sraggaaccg[G/T]gatatwwgkg</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCG</left_flank>
        <right_flank>GATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTCTCTTTCCTTCGATTCACCCCTTAATTATTCTAGAATTTTCTCGTTTTTCTGATATTTCCAATTTCAAGGAAGTCAATTTTTCTCAAAATTTCAGTTTTGAACATTTTTCTGAAAAATAATATGACTTCGAATTCCAACGAGACCATCTTATTCAAATGTGATAACTCTTACAATACATTTATCGAAATACTGAAATATTTGGGTACTGTATTCTACCTGTCCATCGGATTTATTCTCCATATTTTTTTAATGAAAACAATTTTGATTTCTCAGAAATCATTTTTCAAAGATAACTCATATTTTCAGCTTCATGTCGTGGATTCTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGTTCTCTTCTAATCCTTGGCGATGTATTTAACACTCGTCTATTCATGTATGTCCCGCCTCTTTGTCCCATCGCTGGCCCATTTTTCTTAAAATCCCCTTATTTTTCGAAATTCTTGTACGTCCTCATAAATCACTGTAGATTCGCAAAATCGGTCGTTCAAATCTTTATGGTTTCAAATCGAATGACTTGCGTTTTGTGGCCAGTTGCTTATAATCAGGTACAGATTTCCAGACTTTTCAGCAGAATT</canonical>
            <polymorphic>AATTTTCTCTTTCCTTCGATTCACCCCTTAATTATTCTAGAATTTTCTCGTTTTTCTGATATTTCCAATTTCAAGGAAGTCAATTTTTCTCAAAATTTCAGTTTTGAACATTTTTCTGAAAAATAATATGACTTCGAATTCCAACGAGACCATCTTATTCAAATGTGATAACTCTTACAATACATTTATCGAAATACTGAAATATTTGGGTACTGTATTCTACCTGTCCATCGGATTTATTCTCCATATTTTTTTAATGAAAACAATTTTGATTTCTCAGAAATCATTTTTCAAAGATAACTCATATTTTCAGCTTCATGTCGTGGATTCTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGKGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGTTCTCTTCTAATCCTTGGCGATGTATTTAACACTCGTCTATTCATGTATGTCCCGCCTCTTTGTCCCATCGCTGGCCCATTTTTCTTAAAATCCCCTTATTTTTCGAAATTCTTGTACGTCCTCATAAATCACTGTAGATTCGCAAAATCGGTCGTTCAAATCTTTATGGTTTCAAATCGAATGACTTGCGTTTTGTGGCCAGTTGCTTATAATCAGGTACAGATTTCCAGACTTTTCAGCAGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATAGCGGTACGAATACATTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTCTGGAAATGGACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>CTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGT</canonical_amplicon>
		<polymorphic_amplicon>CTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGKGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37527</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>20759</contig_pos>
        <strand>+</strand>
        <context>accgkgatat[A/T]wgkgctcaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATAT</left_flank>
        <right_flank>TGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTTTCCTTCGATTCACCCCTTAATTATTCTAGAATTTTCTCGTTTTTCTGATATTTCCAATTTCAAGGAAGTCAATTTTTCTCAAAATTTCAGTTTTGAACATTTTTCTGAAAAATAATATGACTTCGAATTCCAACGAGACCATCTTATTCAAATGTGATAACTCTTACAATACATTTATCGAAATACTGAAATATTTGGGTACTGTATTCTACCTGTCCATCGGATTTATTCTCCATATTTTTTTAATGAAAACAATTTTGATTTCTCAGAAATCATTTTTCAAAGATAACTCATATTTTCAGCTTCATGTCGTGGATTCTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGTTCTCTTCTAATCCTTGGCGATGTATTTAACACTCGTCTATTCATGTATGTCCCGCCTCTTTGTCCCATCGCTGGCCCATTTTTCTTAAAATCCCCTTATTTTTCGAAATTCTTGTACGTCCTCATAAATCACTGTAGATTCGCAAAATCGGTCGTTCAAATCTTTATGGTTTCAAATCGAATGACTTGCGTTTTGTGGCCAGTTGCTTATAATCAGGTACAGATTTCCAGACTTTTCAGCAGAATTTCCAAT</canonical>
            <polymorphic>CTCTTTCCTTCGATTCACCCCTTAATTATTCTAGAATTTTCTCGTTTTTCTGATATTTCCAATTTCAAGGAAGTCAATTTTTCTCAAAATTTCAGTTTTGAACATTTTTCTGAAAAATAATATGACTTCGAATTCCAACGAGACCATCTTATTCAAATGTGATAACTCTTACAATACATTTATCGAAATACTGAAATATTTGGGTACTGTATTCTACCTGTCCATCGGATTTATTCTCCATATTTTTTTAATGAAAACAATTTTGATTTCTCAGAAATCATTTTTCAAAGATAACTCATATTTTCAGCTTCATGTCGTGGATTCTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATWTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGTTCTCTTCTAATCCTTGGCGATGTATTTAACACTCGTCTATTCATGTATGTCCCGCCTCTTTGTCCCATCGCTGGCCCATTTTTCTTAAAATCCCCTTATTTTTCGAAATTCTTGTACGTCCTCATAAATCACTGTAGATTCGCAAAATCGGTCGTTCAAATCTTTATGGTTTCAAATCGAATGACTTGCGTTTTGTGGCCAGTTGCTTATAATCAGGTACAGATTTCCAGACTTTTCAGCAGAATTTCCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATAGCGGTACGAATACATTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTCTGGAAATGGACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>CTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGT</canonical_amplicon>
		<polymorphic_amplicon>CTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATWTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37528</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>20760</contig_pos>
        <strand>+</strand>
        <context>ccgkgatatw[A/T]gkgctcaaag</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATT</left_flank>
        <right_flank>GGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTTCCTTCGATTCACCCCTTAATTATTCTAGAATTTTCTCGTTTTTCTGATATTTCCAATTTCAAGGAAGTCAATTTTTCTCAAAATTTCAGTTTTGAACATTTTTCTGAAAAATAATATGACTTCGAATTCCAACGAGACCATCTTATTCAAATGTGATAACTCTTACAATACATTTATCGAAATACTGAAATATTTGGGTACTGTATTCTACCTGTCCATCGGATTTATTCTCCATATTTTTTTAATGAAAACAATTTTGATTTCTCAGAAATCATTTTTCAAAGATAACTCATATTTTCAGCTTCATGTCGTGGATTCTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGTTCTCTTCTAATCCTTGGCGATGTATTTAACACTCGTCTATTCATGTATGTCCCGCCTCTTTGTCCCATCGCTGGCCCATTTTTCTTAAAATCCCCTTATTTTTCGAAATTCTTGTACGTCCTCATAAATCACTGTAGATTCGCAAAATCGGTCGTTCAAATCTTTATGGTTTCAAATCGAATGACTTGCGTTTTGTGGCCAGTTGCTTATAATCAGGTACAGATTTCCAGACTTTTCAGCAGAATTTCCAATT</canonical>
            <polymorphic>TCTTTCCTTCGATTCACCCCTTAATTATTCTAGAATTTTCTCGTTTTTCTGATATTTCCAATTTCAAGGAAGTCAATTTTTCTCAAAATTTCAGTTTTGAACATTTTTCTGAAAAATAATATGACTTCGAATTCCAACGAGACCATCTTATTCAAATGTGATAACTCTTACAATACATTTATCGAAATACTGAAATATTTGGGTACTGTATTCTACCTGTCCATCGGATTTATTCTCCATATTTTTTTAATGAAAACAATTTTGATTTCTCAGAAATCATTTTTCAAAGATAACTCATATTTTCAGCTTCATGTCGTGGATTCTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTWGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGTTCTCTTCTAATCCTTGGCGATGTATTTAACACTCGTCTATTCATGTATGTCCCGCCTCTTTGTCCCATCGCTGGCCCATTTTTCTTAAAATCCCCTTATTTTTCGAAATTCTTGTACGTCCTCATAAATCACTGTAGATTCGCAAAATCGGTCGTTCAAATCTTTATGGTTTCAAATCGAATGACTTGCGTTTTGTGGCCAGTTGCTTATAATCAGGTACAGATTTCCAGACTTTTCAGCAGAATTTCCAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATAGCGGTACGAATACATTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTCTGGAAATGGACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>CTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGT</canonical_amplicon>
		<polymorphic_amplicon>CTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTWGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37529</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>20762</contig_pos>
        <strand>+</strand>
        <context>gkgatatwwg[G/T]gctcaaagtg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTG</left_flank>
        <right_flank>GCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCCTTCGATTCACCCCTTAATTATTCTAGAATTTTCTCGTTTTTCTGATATTTCCAATTTCAAGGAAGTCAATTTTTCTCAAAATTTCAGTTTTGAACATTTTTCTGAAAAATAATATGACTTCGAATTCCAACGAGACCATCTTATTCAAATGTGATAACTCTTACAATACATTTATCGAAATACTGAAATATTTGGGTACTGTATTCTACCTGTCCATCGGATTTATTCTCCATATTTTTTTAATGAAAACAATTTTGATTTCTCAGAAATCATTTTTCAAAGATAACTCATATTTTCAGCTTCATGTCGTGGATTCTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGTTCTCTTCTAATCCTTGGCGATGTATTTAACACTCGTCTATTCATGTATGTCCCGCCTCTTTGTCCCATCGCTGGCCCATTTTTCTTAAAATCCCCTTATTTTTCGAAATTCTTGTACGTCCTCATAAATCACTGTAGATTCGCAAAATCGGTCGTTCAAATCTTTATGGTTTCAAATCGAATGACTTGCGTTTTGTGGCCAGTTGCTTATAATCAGGTACAGATTTCCAGACTTTTCAGCAGAATTTCCAATTTT</canonical>
            <polymorphic>TTTCCTTCGATTCACCCCTTAATTATTCTAGAATTTTCTCGTTTTTCTGATATTTCCAATTTCAAGGAAGTCAATTTTTCTCAAAATTTCAGTTTTGAACATTTTTCTGAAAAATAATATGACTTCGAATTCCAACGAGACCATCTTATTCAAATGTGATAACTCTTACAATACATTTATCGAAATACTGAAATATTTGGGTACTGTATTCTACCTGTCCATCGGATTTATTCTCCATATTTTTTTAATGAAAACAATTTTGATTTCTCAGAAATCATTTTTCAAAGATAACTCATATTTTCAGCTTCATGTCGTGGATTCTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGKGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGTTCTCTTCTAATCCTTGGCGATGTATTTAACACTCGTCTATTCATGTATGTCCCGCCTCTTTGTCCCATCGCTGGCCCATTTTTCTTAAAATCCCCTTATTTTTCGAAATTCTTGTACGTCCTCATAAATCACTGTAGATTCGCAAAATCGGTCGTTCAAATCTTTATGGTTTCAAATCGAATGACTTGCGTTTTGTGGCCAGTTGCTTATAATCAGGTACAGATTTCCAGACTTTTCAGCAGAATTTCCAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>503 325 129 43</canonical_bands>
                <polymorphic_bands>546 325 129</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>503 325 129 43</canonical_bands>
                <polymorphic_bands>546 325 129</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>304 129 129 124 96 68 57 43 36 14</canonical_bands>
                <polymorphic_bands>304 172 129 124 96 68 57 36 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATAGCGGTACGAATACATTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTCTGGAAATGGACTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>CTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGGGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGT</canonical_amplicon>
		<polymorphic_amplicon>CTATAGCGGTACGAATACATTTTCTCTAATAAAACGACACATAAACCTTCAGCTTAATTATCTCGGTTCCTATAAGAGATATAATAAATGTGTCGACTGATAAAACATTGGTGATATTGTGATAAACATTTTATCAGTTAATTACTTTATGATACTTCTGGTAGGAACCGAGATATTTGKGCTCAAAGTGTATAGGGTAGACTTCTATAGGGTATTACTTTGAGCTCAATTATCTCGGTTCTTGTGAGAGGTACCAAAATTTTGTTAACTGATAAAATATAGGGCATATTGTGATAAAAAATTTATCAGTTGAAACTTTTTTGATATCTTTTGAAGGAATCGAGGTAATTGAGCTCAAAGTTAATGGCTTTGGGTGGTACTTCTATTAGAGGGAATACGGTAGCTTCAAAGTCCATTTCCAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37530</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>21792</contig_pos>
        <strand>+</strand>
        <context>TTCTATTCCA[A/G]GCCGCGTTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAAAATGGATAACTCACTTCGGACACTAAAAACTATTTTTTCTATTCCA</left_flank>
        <right_flank>GCCGCGTTGTCTCTCTTCCAATCGATTTACATCCTCACAGCTCTCGCATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTTACTGATTATCTTCCTTCCGATTGGGGGAACATGGAATTTATGGATTTCGAAGGTGTTCCCAGTTCAACAGTATGGAGGGCTCGCATTGAGTTATAGTCGAAACGTGCATTGGGTTAGTAATATTTGTTTTTCATGTCAGAAATTATGGGTGACGGAGATTGGAAAAATGTTATTTCTTGGAATTTTCGACTCAGAATTAATTTTTTTTGACTCATTTGCAGAAAATTATGAAGAATACATCCGATGGTCAGGTAGAAAAACGTTCCTAAATATTCTATTGAAAAAGCAGAAAAACCAAAAACAAAACTTGCCGCAAGCACACCATATGGGAGGAATTGGTAGGAGCCGTCTGATAGGAATAATGGGCGGAGTCGAGAGCGGAGCCTAACTTGCAAGCTGCGCGTGGTTTTTAACGGTTTTGCACATAATCATGATAAAAATTCCTCAAAATGGATAACTCACTTCGGACACTAAAAACTATTTTTTCTATTCCAAGCCGCGTTGTCTCTCTTCCAATCGATTTACATCCTCACAGCTCTCGCATTTACCGTAATCTGTACTACTGTAACTCTTTATAAAATGTTAGTGCTTCCCGAGCGTTTGAAAGCTGCTGAAAAATCGTTGTGCTTCACTTCGATTTTTATTTCCATTACTTTTTTATTAGTAGCAGCTACTCAGATCCTATGGGTCACATGTTGTGACTCGGATTGGTTATTTGCAATACAGTTTTTGGCATTTGACACTTTTACAGTGGGGTGAGTACAGGGGCTTTAATATACAGTATACTGGTCAATGAGATATACAGAACCGTATTTTTCAGCTGATTTTCGGCATATTCAATAGTCTGGAGCTCGACTGTCAATTTTCAGATCACTTTGAAAATTTTGGAGGATGTGAAAAAGAGCTAGACTGGAAACTTTGCATTCACAGAATTTTTAGAAAATTCCATAGTTGCAAACGGGCCGGCACGGACAGATGGCGGGCCGGCAGATAAC</canonical>
            <polymorphic>CGTTTACTGATTATCTTCCTTCCGATTGGGGGAACATGGAATTTATGGATTTCGAAGGTGTTCCCAGTTCAACAGTATGGAGGGCTCGCATTGAGTTATAGTCGAAACGTGCATTGGGTTAGTAATATTTGTTTTTCATGTCAGAAATTATGGGTGACGGAGATTGGAAAAATGTTATTTCTTGGAATTTTCGACTCAGAATTAATTTTTTTTGACTCATTTGCAGAAAATTATGAAGAATACATCCGATGGTCAGGTAGAAAAACGTTCCTAAATATTCTATTGAAAAAGCAGAAAAACCAAAAACAAAACTTGCCGCAAGCACACCATATGGGAGGAATTGGTAGGAGCCGTCTGATAGGAATAATGGGCGGAGTCGAGAGCGGAGCCTAACTTGCAAGCTGCGCGTGGTTTTTAACGGTTTTGCACATAATCATGATAAAAATTCCTCAAAATGGATAACTCACTTCGGACACTAAAAACTATTTTTTCTATTCCARGCCGCGTTGTCTCTCTTCCAATCGATTTACATCCTCACAGCTCTCGCATTTACCGTAATCTGTACTACTGTAACTCTTTATAAAATGTTAGTGCTTCCCGAGCGTTTGAAAGCTGCTGAAAAATCGTTGTGCTTCACTTCGATTTTTATTTCCATTACTTTTTTATTAGTAGCAGCTACTCAGATCCTATGGGTCACATGTTGTGACTCGGATTGGTTATTTGCAATACAGTTTTTGGCATTTGACACTTTTACAGTGGGGTGAGTACAGGGGCTTTAATATACAGTATACTGGTCAATGAGATATACAGAACCGTATTTTTCAGCTGATTTTCGGCATATTCAATAGTCTGGAGCTCGACTGTCAATTTTCAGATCACTTTGAAAATTTTGGAGGATGTGAAAAAGAGCTAGACTGGAAACTTTGCATTCACAGAATTTTTAGAAAATTCCATAGTTGCAAACGGGCCGGCACGGACAGATGGCGGGCCGGCAGATAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>266 100 98 84 72 63 58 54 52 39 38 30 21 13 12</canonical_bands>
                <polymorphic_bands>266 139 98 84 72 63 58 54 52 38 30 21 13 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTCAAAATGGATAACTCACT</pcr_primer_p1>
		<pcr_primer_p2>GTGACCCATAGGATCTGAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCCTCAAAATGGATAACTCACTTCGGACACTAAAAACTATTTTTTCTATTCCAAGCCGCGTTGTCTCTCTTCCAATCGATTTACATCCTCACAGCTCTCGCATTTACCGTAATCTGTACTACTGTAACTCTTTATAAAATGTTAGTGCTTCCCGAGCGTTTGAAAGCTGCTGAAAAATCGTTGTGCTTCACTTCGATTTTTATTTCCATTACTTTTTTATTAGTAGCAGCTACTCAGATCCTATGGGTCAC</canonical_amplicon>
		<polymorphic_amplicon>TCCTCAAAATGGATAACTCACTTCGGACACTAAAAACTATTTTTTCTATTCCARGCCGCGTTGTCTCTCTTCCAATCGATTTACATCCTCACAGCTCTCGCATTTACCGTAATCTGTACTACTGTAACTCTTTATAAAATGTTAGTGCTTCCCGAGCGTTTGAAAGCTGCTGAAAAATCGTTGTGCTTCACTTCGATTTTTATTTCCATTACTTTTTTATTAGTAGCAGCTACTCAGATCCTATGGGTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37531</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>66658</contig_pos>
        <strand>+</strand>
        <context>TAAATTTTCG[A/G]CGATTTTTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCATTTTTCTGGAAAAAGGCCTATTTCAAATAATGTTTCTAAATTTTCG</left_flank>
        <right_flank>CGATTTTTATCGTAATTTCGATAATCTTCATCGAAAAAACGGTGAAAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTGATGACTCCACATCGAATGATCCGTAACATTGCCCGAATAATCGTCAAAAGTGAAGACCTGTGGTTGTGCCTTGAATCGAACCGATCTGTTATCCAGCTGTCTCTTCCACTCGATGACGTCATCACGAAGGTATCCGAGCTCTCGAAGCAATTCATTCTTGAATGCGTTATCTTCCTCGCGCATTCGCTTGAATTCCACTAAAAGATTCTGAACGAACGAACCGAGCTGAGCTACCGTATCCTGTTGTTTATCCACCGTTTTCTGGAATCTTCTGCAGTCCCTCTGATTATCCTCATCGTTCCATTCTTGCTGGAATTGCAAATCCTGCATTTTCTTCATCTCCACCTCGGCGGCATGGCGGACCTCCTCTTCGAAATTCTGTTGTCTAATTTTTAAATTTTTTACTTCGTCGCTGAGGTGGCCGATGACTTCCGAAACTGTATCGCCCATTTTTCTGGAAAAAGGCCTATTTCAAATAATGTTTCTAAATTTTCGACGATTTTTATCGTAATTTCGATAATCTTCATCGAAAAAACGGTGAAAATCGTCGAAAAAATTGATTTCAAACAAGAAAATATAGGAGAAAAAATAAATTCAAATGATCATAAATAGAACCAGAGGGACCAAATATAACTTTAAAAAATAGTTCCATGCTTTTATAGCAACATGCAATTGGGGGTAAAACATTCAACAATACATGGTTACAAACGGAGATGGGGGATTAGAAACGAGTAAAATACAAAAAATGAATTAGAAAAAAAAAGAAAAAATTTTTAACATGATAAGATTTACAAAAGGAAGAGCGTTTTCAATCTACAACCACGTCGTCGCTCTTCTCCAGAATGCTTTCTTCTAGTGTTGAATTTTGAATGAGATTCAGAATTTTCGCGTTGAGATGTCCGATTCCTTTGAATTTGCGATTATGTTTTTGACGCATGGTTTCGATCTGTAATTAAATTGCTCGTTTCAGGGCCTGATTTAGATTCGTCTCTTCGC</canonical>
            <polymorphic>GCTGATGACTCCACATCGAATGATCCGTAACATTGCCCGAATAATCGTCAAAAGTGAAGACCTGTGGTTGTGCCTTGAATCGAACCGATCTGTTATCCAGCTGTCTCTTCCACTCGATGACGTCATCACGAAGGTATCCGAGCTCTCGAAGCAATTCATTCTTGAATGCGTTATCTTCCTCGCGCATTCGCTTGAATTCCACTAAAAGATTCTGAACGAACGAACCGAGCTGAGCTACCGTATCCTGTTGTTTATCCACCGTTTTCTGGAATCTTCTGCAGTCCCTCTGATTATCCTCATCGTTCCATTCTTGCTGGAATTGCAAATCCTGCATTTTCTTCATCTCCACCTCGGCGGCATGGCGGACCTCCTCTTCGAAATTCTGTTGTCTAATTTTTAAATTTTTTACTTCGTCGCTGAGGTGGCCGATGACTTCCGAAACTGTATCGCCCATTTTTCTGGAAAAAGGCCTATTTCAAATAATGTTTCTAAATTTTCGRCGATTTTTATCGTAATTTCGATAATCTTCATCGAAAAAACGGTGAAAATCGTCGAAAAAATTGATTTCAAACAAGAAAATATAGGAGAAAAAATAAATTCAAATGATCATAAATAGAACCAGAGGGACCAAATATAACTTTAAAAAATAGTTCCATGCTTTTATAGCAACATGCAATTGGGGGTAAAACATTCAACAATACATGGTTACAAACGGAGATGGGGGATTAGAAACGAGTAAAATACAAAAAATGAATTAGAAAAAAAAAGAAAAAATTTTTAACATGATAAGATTTACAAAAGGAAGAGCGTTTTCAATCTACAACCACGTCGTCGCTCTTCTCCAGAATGCTTTCTTCTAGTGTTGAATTTTGAATGAGATTCAGAATTTTCGCGTTGAGATGTCCGATTCCTTTGAATTTGCGATTATGTTTTTGACGCATGGTTTCGATCTGTAATTAAATTGCTCGTTTCAGGGCCTGATTTAGATTCGTCTCTTCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>394 229 122 64 53 34 32 21 21 17 13</canonical_bands>
                <polymorphic_bands>394 229 143 64 53 34 32 21 17 13</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>416 277 169 86 52</canonical_bands>
                <polymorphic_bands>416 277 169 138</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCGAAATTCTGTTGTCTAATTT</pcr_primer_p1>
		<pcr_primer_p2>TCTGGTTCTATTTATGATCATTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCGAAATTCTGTTGTCTAATTTTTAAATTTTTTACTTCGTCGCTGAGGTGGCCGATGACTTCCGAAACTGTATCGCCCATTTTTCTGGAAAAAGGCCTATTTCAAATAATGTTTCTAAATTTTCGACGATTTTTATCGTAATTTCGATAATCTTCATCGAAAAAACGGTGAAAATCGTCGAAAAAATTGATTTCAAACAAGAAAATATAGGAGAAAAAATAAATTCAAATGATCATAAATAGAACCAGA</canonical_amplicon>
		<polymorphic_amplicon>TTCGAAATTCTGTTGTCTAATTTTTAAATTTTTTACTTCGTCGCTGAGGTGGCCGATGACTTCCGAAACTGTATCGCCCATTTTTCTGGAAAAAGGCCTATTTCAAATAATGTTTCTAAATTTTCGRCGATTTTTATCGTAATTTCGATAATCTTCATCGAAAAAACGGTGAAAATCGTCGAAAAAATTGATTTCAAACAAGAAAATATAGGAGAAAAAATAAATTCAAATGATCATAAATAGAACCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37532</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>66709</contig_pos>
        <strand></strand>
        <context>GGTGAAAATC[G/A]TCGAAAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGATTTTTATCGTAATTTCGATAATCTTCATCGAAAAAACGGTGAAAATC</left_flank>
        <right_flank>TCGAAAAAATTGATTTCAAACAAGAAAATATAGGAGAAAAAATAAATTCA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTGAAGACCTGTGGTTGTGCCTTGAATCGAACCGATCTGTTATCCAGCTGTCTCTTCCACTCGATGACGTCATCACGAAGGTATCCGAGCTCTCGAAGCAATTCATTCTTGAATGCGTTATCTTCCTCGCGCATTCGCTTGAATTCCACTAAAAGATTCTGAACGAACGAACCGAGCTGAGCTACCGTATCCTGTTGTTTATCCACCGTTTTCTGGAATCTTCTGCAGTCCCTCTGATTATCCTCATCGTTCCATTCTTGCTGGAATTGCAAATCCTGCATTTTCTTCATCTCCACCTCGGCGGCATGGCGGACCTCCTCTTCGAAATTCTGTTGTCTAATTTTTAAATTTTTTACTTCGTCGCTGAGGTGGCCGATGACTTCCGAAACTGTATCGCCCATTTTTCTGGAAAAAGGCCTATTTCAAATAATGTTTCTAAATTTTCGACGATTTTTATCGTAATTTCGATAATCTTCATCGAAAAAACGGTGAAAATCGTCGAAAAAATTGATTTCAAACAAGAAAATATAGGAGAAAAAATAAATTCAAATGATCATAAATAGAACCAGAGGGACCAAATATAACTTTAAAAAATAGTTCCATGCTTTTATAGCAACATGCAATTGGGGGTAAAACATTCAACAATACATGGTTACAAACGGAGATGGGGGATTAGAAACGAGTAAAATACAAAAAATGAATTAGAAAAAAAAAGAAAAAATTTTTAACATGATAAGATTTACAAAAGGAAGAGCGTTTTCAATCTACAACCACGTCGTCGCTCTTCTCCAGAATGCTTTCTTCTAGTGTTGAATTTTGAATGAGATTCAGAATTTTCGCGTTGAGATGTCCGATTCCTTTGAATTTGCGATTATGTTTTTGACGCATGGTTTCGATCTGTAATTAAATTGCTCGTTTCAGGGCCTGATTTAGATTCGTCTCTTCGCGATTTACCTCTTGAGACATGTCCTGAATCTGCTTGGAGTGCGTGTTGATGT</canonical>
            <polymorphic>AAGTGAAGACCTGTGGTTGTGCCTTGAATCGAACCGATCTGTTATCCAGCTGTCTCTTCCACTCGATGACGTCATCACGAAGGTATCCGAGCTCTCGAAGCAATTCATTCTTGAATGCGTTATCTTCCTCGCGCATTCGCTTGAATTCCACTAAAAGATTCTGAACGAACGAACCGAGCTGAGCTACCGTATCCTGTTGTTTATCCACCGTTTTCTGGAATCTTCTGCAGTCCCTCTGATTATCCTCATCGTTCCATTCTTGCTGGAATTGCAAATCCTGCATTTTCTTCATCTCCACCTCGGCGGCATGGCGGACCTCCTCTTCGAAATTCTGTTGTCTAATTTTTAAATTTTTTACTTCGTCGCTGAGGTGGCCGATGACTTCCGAAACTGTATCGCCCATTTTTCTGGAAAAAGGCCTATTTCAAATAATGTTTCTAAATTTTCGACGATTTTTATCGTAATTTCGATAATCTTCATCGAAAAAACGGTGAAAATCRTCGAAAAAATTGATTTCAAACAAGAAAATATAGGAGAAAAAATAAATTCAAATGATCATAAATAGAACCAGAGGGACCAAATATAACTTTAAAAAATAGTTCCATGCTTTTATAGCAACATGCAATTGGGGGTAAAACATTCAACAATACATGGTTACAAACGGAGATGGGGGATTAGAAACGAGTAAAATACAAAAAATGAATTAGAAAAAAAAAGAAAAAATTTTTAACATGATAAGATTTACAAAAGGAAGAGCGTTTTCAATCTACAACCACGTCGTCGCTCTTCTCCAGAATGCTTTCTTCTAGTGTTGAATTTTGAATGAGATTCAGAATTTTCGCGTTGAGATGTCCGATTCCTTTGAATTTGCGATTATGTTTTTGACGCATGGTTTCGATCTGTAATTAAATTGCTCGTTTCAGGGCCTGATTTAGATTCGTCTCTTCGCGATTTACCTCTTGAGACATGTCCTGAATCTGCTTGGAGTGCGTGTTGATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>365 277 220 86 52</canonical_bands>
                <polymorphic_bands>365 329 220 86</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCGAAATTCTGTTGTCTAATTT</pcr_primer_p1>
		<pcr_primer_p2>TCTGGTTCTATTTATGATCATTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCGAAATTCTGTTGTCTAATTTTTAAATTTTTTACTTCGTCGCTGAGGTGGCCGATGACTTCCGAAACTGTATCGCCCATTTTTCTGGAAAAAGGCCTATTTCAAATAATGTTTCTAAATTTTCGACGATTTTTATCGTAATTTCGATAATCTTCATCGAAAAAACGGTGAAAATCGTCGAAAAAATTGATTTCAAACAAGAAAATATAGGAGAAAAAATAAATTCAAATGATCATAAATAGAACCAGA</canonical_amplicon>
		<polymorphic_amplicon>TTCGAAATTCTGTTGTCTAATTTTTAAATTTTTTACTTCGTCGCTGAGGTGGCCGATGACTTCCGAAACTGTATCGCCCATTTTTCTGGAAAAAGGCCTATTTCAAATAATGTTTCTAAATTTTCGACGATTTTTATCGTAATTTCGATAATCTTCATCGAAAAAACGGTGAAAATCRTCGAAAAAATTGATTTCAAACAAGAAAATATAGGAGAAAAAATAAATTCAAATGATCATAAATAGAACCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37533</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>67356</contig_pos>
        <strand>+</strand>
        <context>AACCACTGGA[G/T]GCAAGGCTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GACTTGAGGATAGAACGAATAGATCGCTGTACGGATCTGTAACCACTGGA</left_flank>
        <right_flank>GCAAGGCTAGTTCGGTTCTCGTCTGAAAAATGCTCTTTTTGCTCGGTCGT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACATGGTTACAAACGGAGATGGGGGATTAGAAACGAGTAAAATACAAAAAATGAATTAGAAAAAAAAAGAAAAAATTTTTAACATGATAAGATTTACAAAAGGAAGAGCGTTTTCAATCTACAACCACGTCGTCGCTCTTCTCCAGAATGCTTTCTTCTAGTGTTGAATTTTGAATGAGATTCAGAATTTTCGCGTTGAGATGTCCGATTCCTTTGAATTTGCGATTATGTTTTTGACGCATGGTTTCGATCTGTAATTAAATTGCTCGTTTCAGGGCCTGATTTAGATTCGTCTCTTCGCGATTTACCTCTTGAGACATGTCCTGAATCTGCTTGGAGTGCGTGTTGATGTCCTGACGGAGTGGTTCCAGGGCTTTCTGAATTGTTTCTTCTTCTGAACTGATTTGAAAAACATCGGATTTGGCAATTTTCTGTGCGGATGGAGGACGACTTGAGGATAGAACGAATAGATCGCTGTACGGATCTGTAACCACTGGAGGCAAGGCTAGTTCGGTTCTCGTCTGAAAAATGCTCTTTTTGCTCGGTCGTCCGTACAAACACTCTCACCTGAATCTCGACATCACCAGCTCCCTTCTCCTTCGCCATATCATCTAACTCGTTTTTCTCAAAATGCAAACAATTCAGTCGGACCATCTCGATCTTCGCTGCCAACGCGTTATTCGTATCCTGCTGTTCCACTCTATCATTAGCCAATTGCTCCCGGTCAAAATCCTGCTGCTCAATAATCTGCTGAGTTTCACAACCGAGTGCTGAGAGCTCTCCAGCAGTGTCCATAGCAAAATTTTGGGCATCTTTCATCTCATCTCGAAGTGCCTTGACTTGGAGAGAGATAGACTTGTTGAACAGTTCCTGCTTGATTCGAAGCGTCTCGTTCTGGAAAAAGAGCAGGAATTAGTGACTTTAAAGGTGTTGCGCGGTGAATTTTGTACAAAAAGGTATGTGAATTCACATACAAAGCTTTTATGTCTCGTACCTCGT</canonical>
            <polymorphic>TACATGGTTACAAACGGAGATGGGGGATTAGAAACGAGTAAAATACAAAAAATGAATTAGAAAAAAAAAGAAAAAATTTTTAACATGATAAGATTTACAAAAGGAAGAGCGTTTTCAATCTACAACCACGTCGTCGCTCTTCTCCAGAATGCTTTCTTCTAGTGTTGAATTTTGAATGAGATTCAGAATTTTCGCGTTGAGATGTCCGATTCCTTTGAATTTGCGATTATGTTTTTGACGCATGGTTTCGATCTGTAATTAAATTGCTCGTTTCAGGGCCTGATTTAGATTCGTCTCTTCGCGATTTACCTCTTGAGACATGTCCTGAATCTGCTTGGAGTGCGTGTTGATGTCCTGACGGAGTGGTTCCAGGGCTTTCTGAATTGTTTCTTCTTCTGAACTGATTTGAAAAACATCGGATTTGGCAATTTTCTGTGCGGATGGAGGACGACTTGAGGATAGAACGAATAGATCGCTGTACGGATCTGTAACCACTGGAKGCAAGGCTAGTTCGGTTCTCGTCTGAAAAATGCTCTTTTTGCTCGGTCGTCCGTACAAACACTCTCACCTGAATCTCGACATCACCAGCTCCCTTCTCCTTCGCCATATCATCTAACTCGTTTTTCTCAAAATGCAAACAATTCAGTCGGACCATCTCGATCTTCGCTGCCAACGCGTTATTCGTATCCTGCTGTTCCACTCTATCATTAGCCAATTGCTCCCGGTCAAAATCCTGCTGCTCAATAATCTGCTGAGTTTCACAACCGAGTGCTGAGAGCTCTCCAGCAGTGTCCATAGCAAAATTTTGGGCATCTTTCATCTCATCTCGAAGTGCCTTGACTTGGAGAGAGATAGACTTGTTGAACAGTTCCTGCTTGATTCGAAGCGTCTCGTTCTGGAAAAAGAGCAGGAATTAGTGACTTTAAAGGTGTTGCGCGGTGAATTTTGTACAAAAAGGTATGTGAATTCACATACAAAGCTTTTATGTCTCGTACCTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGTTTCTTCTTCTGAACTGA</pcr_primer_p1>
		<pcr_primer_p2>TTGAGAAAAACGAGTTAGATGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATTGTTTCTTCTTCTGAACTGATTTGAAAAACATCGGATTTGGCAATTTTCTGTGCGGATGGAGGACGACTTGAGGATAGAACGAATAGATCGCTGTACGGATCTGTAACCACTGGAGGCAAGGCTAGTTCGGTTCTCGTCTGAAAAATGCTCTTTTTGCTCGGTCGTCCGTACAAACACTCTCACCTGAATCTCGACATCACCAGCTCCCTTCTCCTTCGCCATATCATCTAACTCGTTTTTCTCAA</canonical_amplicon>
		<polymorphic_amplicon>AATTGTTTCTTCTTCTGAACTGATTTGAAAAACATCGGATTTGGCAATTTTCTGTGCGGATGGAGGACGACTTGAGGATAGAACGAATAGATCGCTGTACGGATCTGTAACCACTGGAKGCAAGGCTAGTTCGGTTCTCGTCTGAAAAATGCTCTTTTTGCTCGGTCGTCCGTACAAACACTCTCACCTGAATCTCGACATCACCAGCTCCCTTCTCCTTCGCCATATCATCTAACTCGTTTTTCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37534</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>72792</contig_pos>
        <strand>+</strand>
        <context>ttttgaAATT[C/T]AGGGATTGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGAATCTCAGAATCTCAGAATCTCAGAAATCTTGTACGTTTTTGAAATT</left_flank>
        <right_flank>AGGGATTGTTCAATTTTCGAGTTTGGAGATTCTGGAGTGTTTAATTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAACTTTTTTTGAACCTCGGTGTTTCAGAGTTTCAGGATTTCAGAATTTCAAAATCTCAATCTCAGAATCTTGGAATCTCAGAATCTCAGAACCTCAGAATATCGGAATCTCGGAATCTCAGAGTCTCATAGTTTCAGAATCTCAGAGTCTCATAGTTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCGGAATCTCAGAATCTCAGAATCTCGGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCGAAAACTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAAATCTTGTACGTTTTTGAAATTTAGGGATTGTTCAATTTTCGAGTTTGGAGATTCTGGAGTGTTTAATTTTTTGGAAATTTAGAATTCTAAAGTGTTAGATTTTTCTAGACTTTCTTGGAGGAGAATTTTTGAATCCCAATTTCAGAATCTGTGGCTTCCAGAATTTCAGGATTTTAGAATCTCAGAATTTCAGAATCAACAAAAACTCACACATGAATAAATTTCTCCAACGCATAAAAAACACAAACTGTATGTGCATAAGATACCAATCCCAGTGTTGCCAATGTGATTGTAATCGAAGCCGTCATAATCATAATTCCAACTTCAACGACAAGAATATGAATCACCTGAAGAAAATTCAGCATGAACAATAATAATTAGCACTTTTCTAAGGCGGCCGGTCGCGGCTGGCCTAAGAAACCAGACTTTCCCAAATTTCTCACCCTAAACGATTGAACATTTTCCATGATTTGAAATTTCACAGATAGACTATAAAAGTTAACATTTTGTTCACATTGTCTT</canonical>
            <polymorphic>TGGAACTTTTTTTGAACCTCGGTGTTTCAGAGTTTCAGGATTTCAGAATTTCAAAATCTCAATCTCAGAATCTTGGAATCTCAGAATCTCAGAACCTCAGAATATCGGAATCTCGGAATCTCAGAGTCTCATAGTTTCAGAATCTCAGAGTCTCATAGTTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCGGAATCTCAGAATCTCAGAATCTCGGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCGAAAACTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAAATCTTGTACGTTTTTGAAATTYAGGGATTGTTCAATTTTCGAGTTTGGAGATTCTGGAGTGTTTAATTTTTTGGAAATTTAGAATTCTAAAGTGTTAGATTTTTCTAGACTTTCTTGGAGGAGAATTTTTGAATCCCAATTTCAGAATCTGTGGCTTCCAGAATTTCAGGATTTTAGAATCTCAGAATTTCAGAATCAACAAAAACTCACACATGAATAAATTTCTCCAACGCATAAAAAACACAAACTGTATGTGCATAAGATACCAATCCCAGTGTTGCCAATGTGATTGTAATCGAAGCCGTCATAATCATAATTCCAACTTCAACGACAAGAATATGAATCACCTGAAGAAAATTCAGCATGAACAATAATAATTAGCACTTTTCTAAGGCGGCCGGTCGCGGCTGGCCTAAGAAACCAGACTTTCCCAAATTTCTCACCCTAAACGATTGAACATTTTCCATGATTTGAAATTTCACAGATAGACTATAAAAGTTAACATTTTGTTCACATTGTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>449 136 78 58 48 46 41 41 38 34 24 7</canonical_bands>
                <polymorphic_bands>507 136 78 48 46 41 41 38 34 24 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTTTTGGAAGAGGAAATACAT</pcr_primer_p1>
		<pcr_primer_p2>TTTATTCATGTGTGAGTTTTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>733</pcr_amplicon_size>
		<canonical_amplicon>TTAGGGATTGTTCAATTTTCGAGTTTGGAGATTCTGGAGTGTTTAATTTTTTGGAAATTTAGAATTCTAAAGTGTTAGATTTTTCTAGACTTTCTTGGAGGAGAATTTTTGAATCCCAATTTCAGAATCTGTGGCTTCCAGAATTTCAGGATTTTAGAATCTCAGAATTTCAGAATCAACAAAAACTCACACATGAATAAA</canonical_amplicon>
		<polymorphic_amplicon>TYAGGGATTGTTCAATTTTCGAGTTTGGAGATTCTGGAGTGTTTAATTTTTTGGAAATTTAGAATTCTAAAGTGTTAGATTTTTCTAGACTTTCTTGGAGGAGAATTTTTGAATCCCAATTTCAGAATCTGTGGCTTCCAGAATTTCAGGATTTTAGAATCTCAGAATTTCAGAATCAACAAAAACTCACACATGAATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37535</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>99456</contig_pos>
        <strand></strand>
        <context>aaatttacta[T/A]atgttttaga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTGTTTAGTACAATTGAAAATGTTCAGTCTCATCCAATGAAATTTACTA</left_flank>
        <right_flank>ATGTTTTAGACATCCAAATTTGACTGTTATAAACTAACACTAGGATTCAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCTTGAAGCATACTTGCAAAATCAACGTCCGGCCCGCAGGCCTGGACGGGGCTGGCCGGGCCGGGCCCGGGTTCTCCAAATTTGAAATTTTATTTCAATTTCAGACATTTTTTTCAAATTTCTTGTGAAAAAATAATTTTTATGGACACTCTCATCTTTAAAAGTTTTTTACTTGACAGAAAAACCGTCGATTTTTTCTATTGACCCCAAAATTTTTTTGAAAAGTTAGGAAATATTTTTTCTGAAAACCCGGGCCAGACCGGGCCGGGTTGTGCCCTGAAAATTCTGAAAAAAGCACGGCCTGGCCCGGCCCGTTGCAAGTATGCTTAGAAGCCGTTGCAGTGCTAGAGATGAAACGGAGAGGAGAATACGGTATTTTTAAAGGCGCGCATCTCAAAAACCAATGAAGTTACAAAAAAGTTGTCCACTACAAAATTAAAGCTCTATTTTTGTTTAGTACAATTGAAAATGTTCAGTCTCATCCAATGAAATTTACTATATGTTTTAGACATCCAAATTTGACTGTTATAAACTAACACTAGGATTCATGTGTTGACCAGTGAAAAATAATCAAAAACTTGTATTCTAGATTCCAAAATCCAAATAATAAATTTCCAGAAAAAAGATCCCAGCCGCTGACAATTTACGCCTGGCTCTCTATCTGGCTATCGGGGATTTCGGCTATGCAGCAGCTGCCCTGATCCATATCGGATATTTGGCAATCAACTGGTCAAATGAGTGGCTGGATTACAATCCGTATATAATAATTATCTCAAATTGTTTCCTACCGGCTAATCTGAAAATCATTGTGGTCGTTAGTTGCTCAATGGCGCTAGATAGATGTCTGGTAAGTGTGGTCAATAAAAACTGAGTCATGTCTGGAAGGGTTTCCCACGGACCTGAGTCTGGGAAACCCAAAAATGACCTAGAAACCCGAATTTTAAGTTTCATGAGACCTAGAAACCCAAAATTCCAGGCAATCTTCTTCCCTGTCGTGTA</canonical>
            <polymorphic>GCCTTGAAGCATACTTGCAAAATCAACGTCCGGCCCGCAGGCCTGGACGGGGCTGGCCGGGCCGGGCCCGGGTTCTCCAAATTTGAAATTTTATTTCAATTTCAGACATTTTTTTCAAATTTCTTGTGAAAAAATAATTTTTATGGACACTCTCATCTTTAAAAGTTTTTTACTTGACAGAAAAACCGTCGATTTTTTCTATTGACCCCAAAATTTTTTTGAAAAGTTAGGAAATATTTTTTCTGAAAACCCGGGCCAGACCGGGCCGGGTTGTGCCCTGAAAATTCTGAAAAAAGCACGGCCTGGCCCGGCCCGTTGCAAGTATGCTTAGAAGCCGTTGCAGTGCTAGAGATGAAACGGAGAGGAGAATACGGTATTTTTAAAGGCGCGCATCTCAAAAACCAATGAAGTTACAAAAAAGTTGTCCACTACAAAATTAAAGCTCTATTTTTGTTTAGTACAATTGAAAATGTTCAGTCTCATCCAATGAAATTTACTAWATGTTTTAGACATCCAAATTTGACTGTTATAAACTAACACTAGGATTCATGTGTTGACCAGTGAAAAATAATCAAAAACTTGTATTCTAGATTCCAAAATCCAAATAATAAATTTCCAGAAAAAAGATCCCAGCCGCTGACAATTTACGCCTGGCTCTCTATCTGGCTATCGGGGATTTCGGCTATGCAGCAGCTGCCCTGATCCATATCGGATATTTGGCAATCAACTGGTCAAATGAGTGGCTGGATTACAATCCGTATATAATAATTATCTCAAATTGTTTCCTACCGGCTAATCTGAAAATCATTGTGGTCGTTAGTTGCTCAATGGCGCTAGATAGATGTCTGGTAAGTGTGGTCAATAAAAACTGAGTCATGTCTGGAAGGGTTTCCCACGGACCTGAGTCTGGGAAACCCAAAAATGACCTAGAAACCCGAATTTTAAGTTTCATGAGACCTAGAAACCCAAAATTCCAGGCAATCTTCTTCCCTGTCGTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGCAGTGCTAGAGATGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGATTATTTTTCACTGGTC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTGCAGTGCTAGAGATGAAACGGAGAGGAGAATACGGTATTTTTAAAGGCGCGCATCTCAAAAACCAATGAAGTTACAAAAAAGTTGTCCACTACAAAATTAAAGCTCTATTTTTGTTTAGTACAATTGAAAATGTTCAGTCTCATCCAATGAAATTTACTATATGTTTTAGACATCCAAATTTGACTGTTATAAACTAACACTAGGATTCATGTGTTGACCAGTGAAAAATAATCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTGCAGTGCTAGAGATGAAACGGAGAGGAGAATACGGTATTTTTAAAGGCGCGCATCTCAAAAACCAATGAAGTTACAAAAAAGTTGTCCACTACAAAATTAAAGCTCTATTTTTGTTTAGTACAATTGAAAATGTTCAGTCTCATCCAATGAAATTTACTAWATGTTTTAGACATCCAAATTTGACTGTTATAAACTAACACTAGGATTCATGTGTTGACCAGTGAAAAATAATCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37536</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>99636</contig_pos>
        <strand>+</strand>
        <context>TCGGGGATTT[C/T]GGCTATGCAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAGCCGCTGACAATTTACGCCTGGCTCTCTATCTGGCTATCGGGGATTT</left_flank>
        <right_flank>GGCTATGCAGCAGCTGCCCTGATCCATATCGGATATTTGGCAATCAACTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAACCGTCGATTTTTTCTATTGACCCCAAAATTTTTTTGAAAAGTTAGGAAATATTTTTTCTGAAAACCCGGGCCAGACCGGGCCGGGTTGTGCCCTGAAAATTCTGAAAAAAGCACGGCCTGGCCCGGCCCGTTGCAAGTATGCTTAGAAGCCGTTGCAGTGCTAGAGATGAAACGGAGAGGAGAATACGGTATTTTTAAAGGCGCGCATCTCAAAAACCAATGAAGTTACAAAAAAGTTGTCCACTACAAAATTAAAGCTCTATTTTTGTTTAGTACAATTGAAAATGTTCAGTCTCATCCAATGAAATTTACTATATGTTTTAGACATCCAAATTTGACTGTTATAAACTAACACTAGGATTCATGTGTTGACCAGTGAAAAATAATCAAAAACTTGTATTCTAGATTCCAAAATCCAAATAATAAATTTCCAGAAAAAAGATCCCAGCCGCTGACAATTTACGCCTGGCTCTCTATCTGGCTATCGGGGATTTCGGCTATGCAGCAGCTGCCCTGATCCATATCGGATATTTGGCAATCAACTGGTCAAATGAGTGGCTGGATTACAATCCGTATATAATAATTATCTCAAATTGTTTCCTACCGGCTAATCTGAAAATCATTGTGGTCGTTAGTTGCTCAATGGCGCTAGATAGATGTCTGGTAAGTGTGGTCAATAAAAACTGAGTCATGTCTGGAAGGGTTTCCCACGGACCTGAGTCTGGGAAACCCAAAAATGACCTAGAAACCCGAATTTTAAGTTTCATGAGACCTAGAAACCCAAAATTCCAGGCAATCTTCTTCCCTGTCGTGTACCGTCAACTGAGCAAGAGCTACTTTGCCAACTGTGCAATGGCTTGTGGATATTGTTGGTTCACATTTGATTTTCTCTTCCAATTACTCACAGCGCCACTCAAAAGAATGCCAAATTGCGCCACAATGGCTTGTTTTGTACACCGAACTTTTCTGTTATACGTCAGCTATTCAAATACTGT</canonical>
            <polymorphic>AAAAACCGTCGATTTTTTCTATTGACCCCAAAATTTTTTTGAAAAGTTAGGAAATATTTTTTCTGAAAACCCGGGCCAGACCGGGCCGGGTTGTGCCCTGAAAATTCTGAAAAAAGCACGGCCTGGCCCGGCCCGTTGCAAGTATGCTTAGAAGCCGTTGCAGTGCTAGAGATGAAACGGAGAGGAGAATACGGTATTTTTAAAGGCGCGCATCTCAAAAACCAATGAAGTTACAAAAAAGTTGTCCACTACAAAATTAAAGCTCTATTTTTGTTTAGTACAATTGAAAATGTTCAGTCTCATCCAATGAAATTTACTATATGTTTTAGACATCCAAATTTGACTGTTATAAACTAACACTAGGATTCATGTGTTGACCAGTGAAAAATAATCAAAAACTTGTATTCTAGATTCCAAAATCCAAATAATAAATTTCCAGAAAAAAGATCCCAGCCGCTGACAATTTACGCCTGGCTCTCTATCTGGCTATCGGGGATTTYGGCTATGCAGCAGCTGCCCTGATCCATATCGGATATTTGGCAATCAACTGGTCAAATGAGTGGCTGGATTACAATCCGTATATAATAATTATCTCAAATTGTTTCCTACCGGCTAATCTGAAAATCATTGTGGTCGTTAGTTGCTCAATGGCGCTAGATAGATGTCTGGTAAGTGTGGTCAATAAAAACTGAGTCATGTCTGGAAGGGTTTCCCACGGACCTGAGTCTGGGAAACCCAAAAATGACCTAGAAACCCGAATTTTAAGTTTCATGAGACCTAGAAACCCAAAATTCCAGGCAATCTTCTTCCCTGTCGTGTACCGTCAACTGAGCAAGAGCTACTTTGCCAACTGTGCAATGGCTTGTGGATATTGTTGGTTCACATTTGATTTTCTCTTCCAATTACTCACAGCGCCACTCAAAAGAATGCCAAATTGCGCCACAATGGCTTGTTTTGTACACCGAACTTTTCTGTTATACGTCAGCTATTCAAATACTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTAGATTCCAAAATCCAAATA</pcr_primer_p1>
		<pcr_primer_p2>ATTGAGCAACTAACGACCAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTCTAGATTCCAAAATCCAAATAATAAATTTCCAGAAAAAAGATCCCAGCCGCTGACAATTTACGCCTGGCTCTCTATCTGGCTATCGGGGATTTCGGCTATGCAGCAGCTGCCCTGATCCATATCGGATATTTGGCAATCAACTGGTCAAATGAGTGGCTGGATTACAATCCGTATATAATAATTATCTCAAATTGTTTCCTACCGGCTAATCTGAAAATCATTGTGGTCGTTAGTTGCTCAAT</canonical_amplicon>
		<polymorphic_amplicon>TTCTAGATTCCAAAATCCAAATAATAAATTTCCAGAAAAAAGATCCCAGCCGCTGACAATTTACGCCTGGCTCTCTATCTGGCTATCGGGGATTTYGGCTATGCAGCAGCTGCCCTGATCCATATCGGATATTTGGCAATCAACTGGTCAAATGAGTGGCTGGATTACAATCCGTATATAATAATTATCTCAAATTGTTTCCTACCGGCTAATCTGAAAATCATTGTGGTCGTTAGTTGCTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37537</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>99649</contig_pos>
        <strand>+</strand>
        <context>CTATGCAGCA[A/G]CTGCCCTGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTACGCCTGGCTCTCTATCTGGCTATCGGGGATTTCGGCTATGCAGCA</left_flank>
        <right_flank>CTGCCCTGATCCATATCGGATATTTGGCAATCAACTGGTCAAATGAGTGG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTCTATTGACCCCAAAATTTTTTTGAAAAGTTAGGAAATATTTTTTCTGAAAACCCGGGCCAGACCGGGCCGGGTTGTGCCCTGAAAATTCTGAAAAAAGCACGGCCTGGCCCGGCCCGTTGCAAGTATGCTTAGAAGCCGTTGCAGTGCTAGAGATGAAACGGAGAGGAGAATACGGTATTTTTAAAGGCGCGCATCTCAAAAACCAATGAAGTTACAAAAAAGTTGTCCACTACAAAATTAAAGCTCTATTTTTGTTTAGTACAATTGAAAATGTTCAGTCTCATCCAATGAAATTTACTATATGTTTTAGACATCCAAATTTGACTGTTATAAACTAACACTAGGATTCATGTGTTGACCAGTGAAAAATAATCAAAAACTTGTATTCTAGATTCCAAAATCCAAATAATAAATTTCCAGAAAAAAGATCCCAGCCGCTGACAATTTACGCCTGGCTCTCTATCTGGCTATCGGGGATTTCGGCTATGCAGCAGCTGCCCTGATCCATATCGGATATTTGGCAATCAACTGGTCAAATGAGTGGCTGGATTACAATCCGTATATAATAATTATCTCAAATTGTTTCCTACCGGCTAATCTGAAAATCATTGTGGTCGTTAGTTGCTCAATGGCGCTAGATAGATGTCTGGTAAGTGTGGTCAATAAAAACTGAGTCATGTCTGGAAGGGTTTCCCACGGACCTGAGTCTGGGAAACCCAAAAATGACCTAGAAACCCGAATTTTAAGTTTCATGAGACCTAGAAACCCAAAATTCCAGGCAATCTTCTTCCCTGTCGTGTACCGTCAACTGAGCAAGAGCTACTTTGCCAACTGTGCAATGGCTTGTGGATATTGTTGGTTCACATTTGATTTTCTCTTCCAATTACTCACAGCGCCACTCAAAAGAATGCCAAATTGCGCCACAATGGCTTGTTTTGTACACCGAACTTTTCTGTTATACGTCAGCTATTCAAATACTGTAAGTTCCAAATTC</canonical>
            <polymorphic>TTTTTCTATTGACCCCAAAATTTTTTTGAAAAGTTAGGAAATATTTTTTCTGAAAACCCGGGCCAGACCGGGCCGGGTTGTGCCCTGAAAATTCTGAAAAAAGCACGGCCTGGCCCGGCCCGTTGCAAGTATGCTTAGAAGCCGTTGCAGTGCTAGAGATGAAACGGAGAGGAGAATACGGTATTTTTAAAGGCGCGCATCTCAAAAACCAATGAAGTTACAAAAAAGTTGTCCACTACAAAATTAAAGCTCTATTTTTGTTTAGTACAATTGAAAATGTTCAGTCTCATCCAATGAAATTTACTATATGTTTTAGACATCCAAATTTGACTGTTATAAACTAACACTAGGATTCATGTGTTGACCAGTGAAAAATAATCAAAAACTTGTATTCTAGATTCCAAAATCCAAATAATAAATTTCCAGAAAAAAGATCCCAGCCGCTGACAATTTACGCCTGGCTCTCTATCTGGCTATCGGGGATTTCGGCTATGCAGCARCTGCCCTGATCCATATCGGATATTTGGCAATCAACTGGTCAAATGAGTGGCTGGATTACAATCCGTATATAATAATTATCTCAAATTGTTTCCTACCGGCTAATCTGAAAATCATTGTGGTCGTTAGTTGCTCAATGGCGCTAGATAGATGTCTGGTAAGTGTGGTCAATAAAAACTGAGTCATGTCTGGAAGGGTTTCCCACGGACCTGAGTCTGGGAAACCCAAAAATGACCTAGAAACCCGAATTTTAAGTTTCATGAGACCTAGAAACCCAAAATTCCAGGCAATCTTCTTCCCTGTCGTGTACCGTCAACTGAGCAAGAGCTACTTTGCCAACTGTGCAATGGCTTGTGGATATTGTTGGTTCACATTTGATTTTCTCTTCCAATTACTCACAGCGCCACTCAAAAGAATGCCAAATTGCGCCACAATGGCTTGTTTTGTACACCGAACTTTTCTGTTATACGTCAGCTATTCAAATACTGTAAGTTCCAAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>325 251 249 147 28</canonical_bands>
                <polymorphic_bands>576 249 147 28</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>497 443 54 6</canonical_bands>
                <polymorphic_bands>503 443 54</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>226 191 108 87 62 50 49 37 36 28 23 23 21 16 12 11 10 5 5</canonical_bands>
                <polymorphic_bands>226 191 108 87 62 61 49 37 36 28 23 23 21 16 12 10 5 5</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>500 443 57</canonical_bands>
                <polymorphic_bands>557 443</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>500 494 6</canonical_bands>
                <polymorphic_bands>506 494</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTAGATTCCAAAATCCAAATA</pcr_primer_p1>
		<pcr_primer_p2>ATTGAGCAACTAACGACCAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTCTAGATTCCAAAATCCAAATAATAAATTTCCAGAAAAAAGATCCCAGCCGCTGACAATTTACGCCTGGCTCTCTATCTGGCTATCGGGGATTTCGGCTATGCAGCAGCTGCCCTGATCCATATCGGATATTTGGCAATCAACTGGTCAAATGAGTGGCTGGATTACAATCCGTATATAATAATTATCTCAAATTGTTTCCTACCGGCTAATCTGAAAATCATTGTGGTCGTTAGTTGCTCAAT</canonical_amplicon>
		<polymorphic_amplicon>TTCTAGATTCCAAAATCCAAATAATAAATTTCCAGAAAAAAGATCCCAGCCGCTGACAATTTACGCCTGGCTCTCTATCTGGCTATCGGGGATTTCGGCTATGCAGCARCTGCCCTGATCCATATCGGATATTTGGCAATCAACTGGTCAAATGAGTGGCTGGATTACAATCCGTATATAATAATTATCTCAAATTGTTTCCTACCGGCTAATCTGAAAATCATTGTGGTCGTTAGTTGCTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37538</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>99730</contig_pos>
        <strand>+</strand>
        <context>AATAATTATC[A/T]CAAATTGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAACTGGTCAAATGAGTGGCTGGATTACAATCCGTATATAATAATTATC</left_flank>
        <right_flank>CAAATTGTTTCCTACCGGCTAATCTGAAAATCATTGTGGTCGTTAGTTGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCCTGAAAATTCTGAAAAAAGCACGGCCTGGCCCGGCCCGTTGCAAGTATGCTTAGAAGCCGTTGCAGTGCTAGAGATGAAACGGAGAGGAGAATACGGTATTTTTAAAGGCGCGCATCTCAAAAACCAATGAAGTTACAAAAAAGTTGTCCACTACAAAATTAAAGCTCTATTTTTGTTTAGTACAATTGAAAATGTTCAGTCTCATCCAATGAAATTTACTATATGTTTTAGACATCCAAATTTGACTGTTATAAACTAACACTAGGATTCATGTGTTGACCAGTGAAAAATAATCAAAAACTTGTATTCTAGATTCCAAAATCCAAATAATAAATTTCCAGAAAAAAGATCCCAGCCGCTGACAATTTACGCCTGGCTCTCTATCTGGCTATCGGGGATTTCGGCTATGCAGCAGCTGCCCTGATCCATATCGGATATTTGGCAATCAACTGGTCAAATGAGTGGCTGGATTACAATCCGTATATAATAATTATCTCAAATTGTTTCCTACCGGCTAATCTGAAAATCATTGTGGTCGTTAGTTGCTCAATGGCGCTAGATAGATGTCTGGTAAGTGTGGTCAATAAAAACTGAGTCATGTCTGGAAGGGTTTCCCACGGACCTGAGTCTGGGAAACCCAAAAATGACCTAGAAACCCGAATTTTAAGTTTCATGAGACCTAGAAACCCAAAATTCCAGGCAATCTTCTTCCCTGTCGTGTACCGTCAACTGAGCAAGAGCTACTTTGCCAACTGTGCAATGGCTTGTGGATATTGTTGGTTCACATTTGATTTTCTCTTCCAATTACTCACAGCGCCACTCAAAAGAATGCCAAATTGCGCCACAATGGCTTGTTTTGTACACCGAACTTTTCTGTTATACGTCAGCTATTCAAATACTGTAAGTTCCAAATTCTCAAATGTCAGACTTTAATCAAAATCAATAATTTTTCAGATCGCGGGTCTTCTTATAGTTGTAATGAGCGTTTTCGTTTTT</canonical>
            <polymorphic>GCCCTGAAAATTCTGAAAAAAGCACGGCCTGGCCCGGCCCGTTGCAAGTATGCTTAGAAGCCGTTGCAGTGCTAGAGATGAAACGGAGAGGAGAATACGGTATTTTTAAAGGCGCGCATCTCAAAAACCAATGAAGTTACAAAAAAGTTGTCCACTACAAAATTAAAGCTCTATTTTTGTTTAGTACAATTGAAAATGTTCAGTCTCATCCAATGAAATTTACTATATGTTTTAGACATCCAAATTTGACTGTTATAAACTAACACTAGGATTCATGTGTTGACCAGTGAAAAATAATCAAAAACTTGTATTCTAGATTCCAAAATCCAAATAATAAATTTCCAGAAAAAAGATCCCAGCCGCTGACAATTTACGCCTGGCTCTCTATCTGGCTATCGGGGATTTCGGCTATGCAGCAGCTGCCCTGATCCATATCGGATATTTGGCAATCAACTGGTCAAATGAGTGGCTGGATTACAATCCGTATATAATAATTATCWCAAATTGTTTCCTACCGGCTAATCTGAAAATCATTGTGGTCGTTAGTTGCTCAATGGCGCTAGATAGATGTCTGGTAAGTGTGGTCAATAAAAACTGAGTCATGTCTGGAAGGGTTTCCCACGGACCTGAGTCTGGGAAACCCAAAAATGACCTAGAAACCCGAATTTTAAGTTTCATGAGACCTAGAAACCCAAAATTCCAGGCAATCTTCTTCCCTGTCGTGTACCGTCAACTGAGCAAGAGCTACTTTGCCAACTGTGCAATGGCTTGTGGATATTGTTGGTTCACATTTGATTTTCTCTTCCAATTACTCACAGCGCCACTCAAAAGAATGCCAAATTGCGCCACAATGGCTTGTTTTGTACACCGAACTTTTCTGTTATACGTCAGCTATTCAAATACTGTAAGTTCCAAATTCTCAAATGTCAGACTTTAATCAAAATCAATAATTTTTCAGATCGCGGGTCTTCTTATAGTTGTAATGAGCGTTTTCGTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTAGATTCCAAAATCCAAATA</pcr_primer_p1>
		<pcr_primer_p2>ATTGAGCAACTAACGACCAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTCTAGATTCCAAAATCCAAATAATAAATTTCCAGAAAAAAGATCCCAGCCGCTGACAATTTACGCCTGGCTCTCTATCTGGCTATCGGGGATTTCGGCTATGCAGCAGCTGCCCTGATCCATATCGGATATTTGGCAATCAACTGGTCAAATGAGTGGCTGGATTACAATCCGTATATAATAATTATCTCAAATTGTTTCCTACCGGCTAATCTGAAAATCATTGTGGTCGTTAGTTGCTCAAT</canonical_amplicon>
		<polymorphic_amplicon>TTCTAGATTCCAAAATCCAAATAATAAATTTCCAGAAAAAAGATCCCAGCCGCTGACAATTTACGCCTGGCTCTCTATCTGGCTATCGGGGATTTCGGCTATGCAGCAGCTGCCCTGATCCATATCGGATATTTGGCAATCAACTGGTCAAATGAGTGGCTGGATTACAATCCGTATATAATAATTATCWCAAATTGTTTCCTACCGGCTAATCTGAAAATCATTGTGGTCGTTAGTTGCTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37539</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>99751</contig_pos>
        <strand>+</strand>
        <context>CCTACCGGCT[A/C]ATCTGAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGGATTACAATCCGTATATAATAATTATCTCAAATTGTTTCCTACCGGCT</left_flank>
        <right_flank>ATCTGAAAATCATTGTGGTCGTTAGTTGCTCAATGGCGCTAGATAGATGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCACGGCCTGGCCCGGCCCGTTGCAAGTATGCTTAGAAGCCGTTGCAGTGCTAGAGATGAAACGGAGAGGAGAATACGGTATTTTTAAAGGCGCGCATCTCAAAAACCAATGAAGTTACAAAAAAGTTGTCCACTACAAAATTAAAGCTCTATTTTTGTTTAGTACAATTGAAAATGTTCAGTCTCATCCAATGAAATTTACTATATGTTTTAGACATCCAAATTTGACTGTTATAAACTAACACTAGGATTCATGTGTTGACCAGTGAAAAATAATCAAAAACTTGTATTCTAGATTCCAAAATCCAAATAATAAATTTCCAGAAAAAAGATCCCAGCCGCTGACAATTTACGCCTGGCTCTCTATCTGGCTATCGGGGATTTCGGCTATGCAGCAGCTGCCCTGATCCATATCGGATATTTGGCAATCAACTGGTCAAATGAGTGGCTGGATTACAATCCGTATATAATAATTATCTCAAATTGTTTCCTACCGGCTAATCTGAAAATCATTGTGGTCGTTAGTTGCTCAATGGCGCTAGATAGATGTCTGGTAAGTGTGGTCAATAAAAACTGAGTCATGTCTGGAAGGGTTTCCCACGGACCTGAGTCTGGGAAACCCAAAAATGACCTAGAAACCCGAATTTTAAGTTTCATGAGACCTAGAAACCCAAAATTCCAGGCAATCTTCTTCCCTGTCGTGTACCGTCAACTGAGCAAGAGCTACTTTGCCAACTGTGCAATGGCTTGTGGATATTGTTGGTTCACATTTGATTTTCTCTTCCAATTACTCACAGCGCCACTCAAAAGAATGCCAAATTGCGCCACAATGGCTTGTTTTGTACACCGAACTTTTCTGTTATACGTCAGCTATTCAAATACTGTAAGTTCCAAATTCTCAAATGTCAGACTTTAATCAAAATCAATAATTTTTCAGATCGCGGGTCTTCTTATAGTTGTAATGAGCGTTTTCGTTTTTGCGGGCATTCAAAAAATCTCC</canonical>
            <polymorphic>GCACGGCCTGGCCCGGCCCGTTGCAAGTATGCTTAGAAGCCGTTGCAGTGCTAGAGATGAAACGGAGAGGAGAATACGGTATTTTTAAAGGCGCGCATCTCAAAAACCAATGAAGTTACAAAAAAGTTGTCCACTACAAAATTAAAGCTCTATTTTTGTTTAGTACAATTGAAAATGTTCAGTCTCATCCAATGAAATTTACTATATGTTTTAGACATCCAAATTTGACTGTTATAAACTAACACTAGGATTCATGTGTTGACCAGTGAAAAATAATCAAAAACTTGTATTCTAGATTCCAAAATCCAAATAATAAATTTCCAGAAAAAAGATCCCAGCCGCTGACAATTTACGCCTGGCTCTCTATCTGGCTATCGGGGATTTCGGCTATGCAGCAGCTGCCCTGATCCATATCGGATATTTGGCAATCAACTGGTCAAATGAGTGGCTGGATTACAATCCGTATATAATAATTATCTCAAATTGTTTCCTACCGGCTMATCTGAAAATCATTGTGGTCGTTAGTTGCTCAATGGCGCTAGATAGATGTCTGGTAAGTGTGGTCAATAAAAACTGAGTCATGTCTGGAAGGGTTTCCCACGGACCTGAGTCTGGGAAACCCAAAAATGACCTAGAAACCCGAATTTTAAGTTTCATGAGACCTAGAAACCCAAAATTCCAGGCAATCTTCTTCCCTGTCGTGTACCGTCAACTGAGCAAGAGCTACTTTGCCAACTGTGCAATGGCTTGTGGATATTGTTGGTTCACATTTGATTTTCTCTTCCAATTACTCACAGCGCCACTCAAAAGAATGCCAAATTGCGCCACAATGGCTTGTTTTGTACACCGAACTTTTCTGTTATACGTCAGCTATTCAAATACTGTAAGTTCCAAATTCTCAAATGTCAGACTTTAATCAAAATCAATAATTTTTCAGATCGCGGGTCTTCTTATAGTTGTAATGAGCGTTTTCGTTTTTGCGGGCATTCAAAAAATCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTACGCCTGGCTCTCTAT</pcr_primer_p1>
		<pcr_primer_p2>TCCAGACATGACTCAGTTTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ATTTACGCCTGGCTCTCTATCTGGCTATCGGGGATTTCGGCTATGCAGCAGCTGCCCTGATCCATATCGGATATTTGGCAATCAACTGGTCAAATGAGTGGCTGGATTACAATCCGTATATAATAATTATCTCAAATTGTTTCCTACCGGCTAATCTGAAAATCATTGTGGTCGTTAGTTGCTCAATGGCGCTAGATAGATGTCTGGTAAGTGTGGTCAATAAAAACTGAGTCATGTCTGGA</canonical_amplicon>
		<polymorphic_amplicon>ATTTACGCCTGGCTCTCTATCTGGCTATCGGGGATTTCGGCTATGCAGCAGCTGCCCTGATCCATATCGGATATTTGGCAATCAACTGGTCAAATGAGTGGCTGGATTACAATCCGTATATAATAATTATCTCAAATTGTTTCCTACCGGCTMATCTGAAAATCATTGTGGTCGTTAGTTGCTCAATGGCGCTAGATAGATGTCTGGTAAGTGTGGTCAATAAAAACTGAGTCATGTCTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37540</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>99802</contig_pos>
        <strand>+</strand>
        <context>AGATAGATGT[C/G]TGGTAAGTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATCTGAAAATCATTGTGGTCGTTAGTTGCTCAATGGCGCTAGATAGATGT</left_flank>
        <right_flank>TGGTAAGTGTGGTCAATAAAAACTGAGTCATGTCTGGAAGGGTTTCCCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAGATGAAACGGAGAGGAGAATACGGTATTTTTAAAGGCGCGCATCTCAAAAACCAATGAAGTTACAAAAAAGTTGTCCACTACAAAATTAAAGCTCTATTTTTGTTTAGTACAATTGAAAATGTTCAGTCTCATCCAATGAAATTTACTATATGTTTTAGACATCCAAATTTGACTGTTATAAACTAACACTAGGATTCATGTGTTGACCAGTGAAAAATAATCAAAAACTTGTATTCTAGATTCCAAAATCCAAATAATAAATTTCCAGAAAAAAGATCCCAGCCGCTGACAATTTACGCCTGGCTCTCTATCTGGCTATCGGGGATTTCGGCTATGCAGCAGCTGCCCTGATCCATATCGGATATTTGGCAATCAACTGGTCAAATGAGTGGCTGGATTACAATCCGTATATAATAATTATCTCAAATTGTTTCCTACCGGCTAATCTGAAAATCATTGTGGTCGTTAGTTGCTCAATGGCGCTAGATAGATGTCTGGTAAGTGTGGTCAATAAAAACTGAGTCATGTCTGGAAGGGTTTCCCACGGACCTGAGTCTGGGAAACCCAAAAATGACCTAGAAACCCGAATTTTAAGTTTCATGAGACCTAGAAACCCAAAATTCCAGGCAATCTTCTTCCCTGTCGTGTACCGTCAACTGAGCAAGAGCTACTTTGCCAACTGTGCAATGGCTTGTGGATATTGTTGGTTCACATTTGATTTTCTCTTCCAATTACTCACAGCGCCACTCAAAAGAATGCCAAATTGCGCCACAATGGCTTGTTTTGTACACCGAACTTTTCTGTTATACGTCAGCTATTCAAATACTGTAAGTTCCAAATTCTCAAATGTCAGACTTTAATCAAAATCAATAATTTTTCAGATCGCGGGTCTTCTTATAGTTGTAATGAGCGTTTTCGTTTTTGCGGGCATTCAAAAAATCTCCCAGAGAAAAAGTCAGATCGGCACTCAAACGGTATCTTTGTACTTGAAAGGC</canonical>
            <polymorphic>TAGAGATGAAACGGAGAGGAGAATACGGTATTTTTAAAGGCGCGCATCTCAAAAACCAATGAAGTTACAAAAAAGTTGTCCACTACAAAATTAAAGCTCTATTTTTGTTTAGTACAATTGAAAATGTTCAGTCTCATCCAATGAAATTTACTATATGTTTTAGACATCCAAATTTGACTGTTATAAACTAACACTAGGATTCATGTGTTGACCAGTGAAAAATAATCAAAAACTTGTATTCTAGATTCCAAAATCCAAATAATAAATTTCCAGAAAAAAGATCCCAGCCGCTGACAATTTACGCCTGGCTCTCTATCTGGCTATCGGGGATTTCGGCTATGCAGCAGCTGCCCTGATCCATATCGGATATTTGGCAATCAACTGGTCAAATGAGTGGCTGGATTACAATCCGTATATAATAATTATCTCAAATTGTTTCCTACCGGCTAATCTGAAAATCATTGTGGTCGTTAGTTGCTCAATGGCGCTAGATAGATGTSTGGTAAGTGTGGTCAATAAAAACTGAGTCATGTCTGGAAGGGTTTCCCACGGACCTGAGTCTGGGAAACCCAAAAATGACCTAGAAACCCGAATTTTAAGTTTCATGAGACCTAGAAACCCAAAATTCCAGGCAATCTTCTTCCCTGTCGTGTACCGTCAACTGAGCAAGAGCTACTTTGCCAACTGTGCAATGGCTTGTGGATATTGTTGGTTCACATTTGATTTTCTCTTCCAATTACTCACAGCGCCACTCAAAAGAATGCCAAATTGCGCCACAATGGCTTGTTTTGTACACCGAACTTTTCTGTTATACGTCAGCTATTCAAATACTGTAAGTTCCAAATTCTCAAATGTCAGACTTTAATCAAAATCAATAATTTTTCAGATCGCGGGTCTTCTTATAGTTGTAATGAGCGTTTTCGTTTTTGCGGGCATTCAAAAAATCTCCCAGAGAAAAAGTCAGATCGGCACTCAAACGGTATCTTTGTACTTGAAAGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATATTTGGCAATCAACTG</pcr_primer_p1>
		<pcr_primer_p2>GAAACTTAAAATTCGGGTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GGATATTTGGCAATCAACTGGTCAAATGAGTGGCTGGATTACAATCCGTATATAATAATTATCTCAAATTGTTTCCTACCGGCTAATCTGAAAATCATTGTGGTCGTTAGTTGCTCAATGGCGCTAGATAGATGTCTGGTAAGTGTGGTCAATAAAAACTGAGTCATGTCTGGAAGGGTTTCCCACGGACCTGAGTCTGGGAAACCCAAAAATGACCTAGAAACCCGAATTTTAAGTTTC</canonical_amplicon>
		<polymorphic_amplicon>GGATATTTGGCAATCAACTGGTCAAATGAGTGGCTGGATTACAATCCGTATATAATAATTATCTCAAATTGTTTCCTACCGGCTAATCTGAAAATCATTGTGGTCGTTAGTTGCTCAATGGCGCTAGATAGATGTSTGGTAAGTGTGGTCAATAAAAACTGAGTCATGTCTGGAAGGGTTTCCCACGGACCTGAGTCTGGGAAACCCAAAAATGACCTAGAAACCCGAATTTTAAGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37541</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>99924</contig_pos>
        <strand>+</strand>
        <context>CTAGAAACCC[A/G]AAATTCCAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAATGACCTAGAAACCCGAATTTTAAGTTTCATGAGACCTAGAAACCC</left_flank>
        <right_flank>AAATTCCAGGCAATCTTCTTCCCTGTCGTGTACCGTCAACTGAGCAAGAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGTTCAGTCTCATCCAATGAAATTTACTATATGTTTTAGACATCCAAATTTGACTGTTATAAACTAACACTAGGATTCATGTGTTGACCAGTGAAAAATAATCAAAAACTTGTATTCTAGATTCCAAAATCCAAATAATAAATTTCCAGAAAAAAGATCCCAGCCGCTGACAATTTACGCCTGGCTCTCTATCTGGCTATCGGGGATTTCGGCTATGCAGCAGCTGCCCTGATCCATATCGGATATTTGGCAATCAACTGGTCAAATGAGTGGCTGGATTACAATCCGTATATAATAATTATCTCAAATTGTTTCCTACCGGCTAATCTGAAAATCATTGTGGTCGTTAGTTGCTCAATGGCGCTAGATAGATGTCTGGTAAGTGTGGTCAATAAAAACTGAGTCATGTCTGGAAGGGTTTCCCACGGACCTGAGTCTGGGAAACCCAAAAATGACCTAGAAACCCGAATTTTAAGTTTCATGAGACCTAGAAACCCAAAATTCCAGGCAATCTTCTTCCCTGTCGTGTACCGTCAACTGAGCAAGAGCTACTTTGCCAACTGTGCAATGGCTTGTGGATATTGTTGGTTCACATTTGATTTTCTCTTCCAATTACTCACAGCGCCACTCAAAAGAATGCCAAATTGCGCCACAATGGCTTGTTTTGTACACCGAACTTTTCTGTTATACGTCAGCTATTCAAATACTGTAAGTTCCAAATTCTCAAATGTCAGACTTTAATCAAAATCAATAATTTTTCAGATCGCGGGTCTTCTTATAGTTGTAATGAGCGTTTTCGTTTTTGCGGGCATTCAAAAAATCTCCCAGAGAAAAAGTCAGATCGGCACTCAAACGGTATCTTTGTACTTGAAAGGCCACCGCACTCCAACAATTTATTTTCCAGACTACAGGTGTAAAAACGACAAGTGTATTCCGGCAAGCCAATCGGATTACTGTAGGCATTTTGTTCTGTTCTCTTTTCTTTGTCACAATTCCGT</canonical>
            <polymorphic>AATGTTCAGTCTCATCCAATGAAATTTACTATATGTTTTAGACATCCAAATTTGACTGTTATAAACTAACACTAGGATTCATGTGTTGACCAGTGAAAAATAATCAAAAACTTGTATTCTAGATTCCAAAATCCAAATAATAAATTTCCAGAAAAAAGATCCCAGCCGCTGACAATTTACGCCTGGCTCTCTATCTGGCTATCGGGGATTTCGGCTATGCAGCAGCTGCCCTGATCCATATCGGATATTTGGCAATCAACTGGTCAAATGAGTGGCTGGATTACAATCCGTATATAATAATTATCTCAAATTGTTTCCTACCGGCTAATCTGAAAATCATTGTGGTCGTTAGTTGCTCAATGGCGCTAGATAGATGTCTGGTAAGTGTGGTCAATAAAAACTGAGTCATGTCTGGAAGGGTTTCCCACGGACCTGAGTCTGGGAAACCCAAAAATGACCTAGAAACCCGAATTTTAAGTTTCATGAGACCTAGAAACCCRAAATTCCAGGCAATCTTCTTCCCTGTCGTGTACCGTCAACTGAGCAAGAGCTACTTTGCCAACTGTGCAATGGCTTGTGGATATTGTTGGTTCACATTTGATTTTCTCTTCCAATTACTCACAGCGCCACTCAAAAGAATGCCAAATTGCGCCACAATGGCTTGTTTTGTACACCGAACTTTTCTGTTATACGTCAGCTATTCAAATACTGTAAGTTCCAAATTCTCAAATGTCAGACTTTAATCAAAATCAATAATTTTTCAGATCGCGGGTCTTCTTATAGTTGTAATGAGCGTTTTCGTTTTTGCGGGCATTCAAAAAATCTCCCAGAGAAAAAGTCAGATCGGCACTCAAACGGTATCTTTGTACTTGAAAGGCCACCGCACTCCAACAATTTATTTTCCAGACTACAGGTGTAAAAACGACAAGTGTATTCCGGCAAGCCAATCGGATTACTGTAGGCATTTTGTTCTGTTCTCTTTTCTTTGTCACAATTCCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGTAAGTGTGGTCAATAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CTGTGAGTAATTGGAAGAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TGGTAAGTGTGGTCAATAAAAACTGAGTCATGTCTGGAAGGGTTTCCCACGGACCTGAGTCTGGGAAACCCAAAAATGACCTAGAAACCCGAATTTTAAGTTTCATGAGACCTAGAAACCCAAAATTCCAGGCAATCTTCTTCCCTGTCGTGTACCGTCAACTGAGCAAGAGCTACTTTGCCAACTGTGCAATGGCTTGTGGATATTGTTGGTTCACATTTGATTTTCTCTTCCAATTACTCACAG</canonical_amplicon>
		<polymorphic_amplicon>TGGTAAGTGTGGTCAATAAAAACTGAGTCATGTCTGGAAGGGTTTCCCACGGACCTGAGTCTGGGAAACCCAAAAATGACCTAGAAACCCGAATTTTAAGTTTCATGAGACCTAGAAACCCRAAATTCCAGGCAATCTTCTTCCCTGTCGTGTACCGTCAACTGAGCAAGAGCTACTTTGCCAACTGTGCAATGGCTTGTGGATATTGTTGGTTCACATTTGATTTTCTCTTCCAATTACTCACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37542</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>100062</contig_pos>
        <strand>+</strand>
        <context>CACTCAAAAG[A/T]ATGCCAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGGTTCACATTTGATTTTCTCTTCCAATTACTCACAGCGCCACTCAAAAG</left_flank>
        <right_flank>ATGCCAAATTGCGCCACAATGGCTTGTTTTGTACACCGAACTTTTCTGTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAAATTTCCAGAAAAAAGATCCCAGCCGCTGACAATTTACGCCTGGCTCTCTATCTGGCTATCGGGGATTTCGGCTATGCAGCAGCTGCCCTGATCCATATCGGATATTTGGCAATCAACTGGTCAAATGAGTGGCTGGATTACAATCCGTATATAATAATTATCTCAAATTGTTTCCTACCGGCTAATCTGAAAATCATTGTGGTCGTTAGTTGCTCAATGGCGCTAGATAGATGTCTGGTAAGTGTGGTCAATAAAAACTGAGTCATGTCTGGAAGGGTTTCCCACGGACCTGAGTCTGGGAAACCCAAAAATGACCTAGAAACCCGAATTTTAAGTTTCATGAGACCTAGAAACCCAAAATTCCAGGCAATCTTCTTCCCTGTCGTGTACCGTCAACTGAGCAAGAGCTACTTTGCCAACTGTGCAATGGCTTGTGGATATTGTTGGTTCACATTTGATTTTCTCTTCCAATTACTCACAGCGCCACTCAAAAGAATGCCAAATTGCGCCACAATGGCTTGTTTTGTACACCGAACTTTTCTGTTATACGTCAGCTATTCAAATACTGTAAGTTCCAAATTCTCAAATGTCAGACTTTAATCAAAATCAATAATTTTTCAGATCGCGGGTCTTCTTATAGTTGTAATGAGCGTTTTCGTTTTTGCGGGCATTCAAAAAATCTCCCAGAGAAAAAGTCAGATCGGCACTCAAACGGTATCTTTGTACTTGAAAGGCCACCGCACTCCAACAATTTATTTTCCAGACTACAGGTGTAAAAACGACAAGTGTATTCCGGCAAGCCAATCGGATTACTGTAGGCATTTTGTTCTGTTCTCTTTTCTTTGTCACAATTCCGTCGTTGTTGGTGACGGGGTATGAGGAGGTGACAGGGATTTCGCTGTTCGCCGAACTTGGACCGTTTTATATTTGTGCGATTTTGGTGAATGGTGAGTGTAGGGACAGTAGCAGGGTCTTATCAGTGTTCGTGAAAGAGA</canonical>
            <polymorphic>AATAAATTTCCAGAAAAAAGATCCCAGCCGCTGACAATTTACGCCTGGCTCTCTATCTGGCTATCGGGGATTTCGGCTATGCAGCAGCTGCCCTGATCCATATCGGATATTTGGCAATCAACTGGTCAAATGAGTGGCTGGATTACAATCCGTATATAATAATTATCTCAAATTGTTTCCTACCGGCTAATCTGAAAATCATTGTGGTCGTTAGTTGCTCAATGGCGCTAGATAGATGTCTGGTAAGTGTGGTCAATAAAAACTGAGTCATGTCTGGAAGGGTTTCCCACGGACCTGAGTCTGGGAAACCCAAAAATGACCTAGAAACCCGAATTTTAAGTTTCATGAGACCTAGAAACCCAAAATTCCAGGCAATCTTCTTCCCTGTCGTGTACCGTCAACTGAGCAAGAGCTACTTTGCCAACTGTGCAATGGCTTGTGGATATTGTTGGTTCACATTTGATTTTCTCTTCCAATTACTCACAGCGCCACTCAAAAGWATGCCAAATTGCGCCACAATGGCTTGTTTTGTACACCGAACTTTTCTGTTATACGTCAGCTATTCAAATACTGTAAGTTCCAAATTCTCAAATGTCAGACTTTAATCAAAATCAATAATTTTTCAGATCGCGGGTCTTCTTATAGTTGTAATGAGCGTTTTCGTTTTTGCGGGCATTCAAAAAATCTCCCAGAGAAAAAGTCAGATCGGCACTCAAACGGTATCTTTGTACTTGAAAGGCCACCGCACTCCAACAATTTATTTTCCAGACTACAGGTGTAAAAACGACAAGTGTATTCCGGCAAGCCAATCGGATTACTGTAGGCATTTTGTTCTGTTCTCTTTTCTTTGTCACAATTCCGTCGTTGTTGGTGACGGGGTATGAGGAGGTGACAGGGATTTCGCTGTTCGCCGAACTTGGACCGTTTTATATTTGTGCGATTTTGGTGAATGGTGAGTGTAGGGACAGTAGCAGGGTCTTATCAGTGTTCGTGAAAGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTAGAAACCCGAATTTTAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTGAATAGCTGACGTATAACAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCTAGAAACCCGAATTTTAAGTTTCATGAGACCTAGAAACCCAAAATTCCAGGCAATCTTCTTCCCTGTCGTGTACCGTCAACTGAGCAAGAGCTACTTTGCCAACTGTGCAATGGCTTGTGGATATTGTTGGTTCACATTTGATTTTCTCTTCCAATTACTCACAGCGCCACTCAAAAGAATGCCAAATTGCGCCACAATGGCTTGTTTTGTACACCGAACTTTTCTGTTATACGTCAGCTATTCAA</canonical_amplicon>
		<polymorphic_amplicon>CCTAGAAACCCGAATTTTAAGTTTCATGAGACCTAGAAACCCAAAATTCCAGGCAATCTTCTTCCCTGTCGTGTACCGTCAACTGAGCAAGAGCTACTTTGCCAACTGTGCAATGGCTTGTGGATATTGTTGGTTCACATTTGATTTTCTCTTCCAATTACTCACAGCGCCACTCAAAAGWATGCCAAATTGCGCCACAATGGCTTGTTTTGTACACCGAACTTTTCTGTTATACGTCAGCTATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37543</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>111321</contig_pos>
        <strand>+</strand>
        <context>TTTGAGTTTT[C/T]WTKWAAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTCTATTATCCTTATCATATCCCACACAATAACTGTAATTTTGAGTTTT</left_flank>
        <right_flank>ATGAAAAAATTTTATGAAAAAATGCAAATGGTGCCTACAGTAGCCGGGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTGAATATTTCGGATTTTTCGAATTTTTAGAATTTCCCATTTTCTAAATTATTGGATTTCTCGGAATGATCAGAATTCATTTAAAGTTATTATGTTAAGACTTTTCTCAATGAAACTTTCAAAAATTAAATTTTCTGGCTCTTCAAAATAAACGCCTTAAAAATAAGACATTTCAGGAATCCCCTCCAACAAAACGTACATGAATTGGTGGACCAATAACCCTGAAAATATTCCAAAAGTCTTAAAATCATCTGAGATTCTTCCCCTCCTGATCGGTGGTCTTCTCATTTGGCATTATTTATTTTCAATGATCTGTTTCATATTTTCATTTTGTGCAGAACGAGCAATCGCAACTTTGCTTTCTGGGTAACTTTTAAATTGCTATTTTCAGTAATTTGTTTTTTTCTTCTCAGAGATTACGAAAAACACCAACGCAAGTACATTTCCTCTATTATCCTTATCATATCCCACACAATAACTGTAATTTTGAGTTTTTATGAAAAAATTTTATGAAAAAATGCAAATGGTGCCTACAGTAGCCGGGTGTATGATATGTGTGGCGACGTCTTGTGTGGTAATTTGATTTTCCAATTTTTTAGAAACTTAAAAATTTTAGTTTTAATAATTCCAGCTTTTCATAATCATCCTAATCGTCAATTTGAAAATCAACATTCTGCAATCCAAAACTGGAAGTGGTGTAATTCTGTACACTTTGGCTTTTCGATTTCAAGTAAAAGAGAATATAAGAGCTTTGAAGGTGAAAGGAAATCTAAAAATTGAATTCAAAAAATGAACAAAAAATTCAGTTAGCGTATCGAGTTTTGGTCTGCATCGGAGTTTATATTTTTGTATTGTGTATTATTTTGTTCACACTATTTTTCGATGTGATTCCTTCGATGAATCAGATTTTGATATTTCTTTTGGAGAATTGCATTTATTTGTGAGTTTCTGCTTCTAAACATGTTTCTAGGGTTCATTTAGTCGGAGAACTGGAAA</canonical>
            <polymorphic>TTTTTTGAATATTTCGGATTTTTCGAATTTTTAGAATTTCCCATTTTCTAAATTATTGGATTTCTCGGAATGATCAGAATTCATTTAAAGTTATTATGTTAAGACTTTTCTCAATGAAACTTTCAAAAATTAAATTTTCTGGCTCTTCAAAATAAACGCCTTAAAAATAAGACATTTCAGGAATCCCCTCCAACAAAACGTACATGAATTGGTGGACCAATAACCCTGAAAATATTCCAAAAGTCTTAAAATCATCTGAGATTCTTCCCCTCCTGATCGGTGGTCTTCTCATTTGGCATTATTTATTTTCAATGATCTGTTTCATATTTTCATTTTGTGCAGAACGAGCAATCGCAACTTTGCTTTCTGGGTAACTTTTAAATTGCTATTTTCAGTAATTTGTTTTTTTCTTCTCAGAGATTACGAAAAACACCAACGCAAGTACATTTCCTCTATTATCCTTATCATATCCCACACAATAACTGTAATTTTGAGTTTTYATGAAAAAATTTTATGAAAAAATGCAAATGGTGCCTACAGTAGCCGGGTGTATGATATGTGTGGCGACGTCTTGTGTGGTAATTTGATTTTCCAATTTTTTAGAAACTTAAAAATTTTAGTTTTAATAATTCCAGCTTTTCATAATCATCCTAATCGTCAATTTGAAAATCAACATTCTGCAATCCAAAACTGGAAGTGGTGTAATTCTGTACACTTTGGCTTTTCGATTTCAAGTAAAAGAGAATATAAGAGCTTTGAAGGTGAAAGGAAATCTAAAAATTGAATTCAAAAAATGAACAAAAAATTCAGTTAGCGTATCGAGTTTTGGTCTGCATCGGAGTTTATATTTTTGTATTGTGTATTATTTTGTTCACACTATTTTTCGATGTGATTCCTTCGATGAATCAGATTTTGATATTTCTTTTGGAGAATTGCATTTATTTGTGAGTTTCTGCTTCTAAACATGTTTCTAGGGTTCATTTAGTCGGAGAACTGGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTCAGAGATTACGAAAAACA</pcr_primer_p1>
		<pcr_primer_p2>GACGATTAGGATGATTATGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCTCAGAGATTACGAAAAACACCAACGCAAGTACATTTCCTCTATTATCCTTATCATATCCCACACAATAACTGTAATTTTGAGTTTTTATGAAAAAATTTTATGAAAAAATGCAAATGGTGCCTACAGTAGCCGGGTGTATGATATGTGTGGCGACGTCTTGTGTGGTAATTTGATTTTCCAATTTTTTAGAAACTTAAAAATTTTAGTTTTAATAATTCCAGCTTTTCATAATCATCCTAATCGTC</canonical_amplicon>
		<polymorphic_amplicon>CTTCTCAGAGATTACGAAAAACACCAACGCAAGTACATTTCCTCTATTATCCTTATCATATCCCACACAATAACTGTAATTTTGAGTTTTYATGAAAAAATTTTATGAAAAAATGCAAATGGTGCCTACAGTAGCCGGGTGTATGATATGTGTGGCGACGTCTTGTGTGGTAATTTGATTTTCCAATTTTTTAGAAACTTAAAAATTTTAGTTTTAATAATTCCAGCTTTTCATAATCATCCTAATCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37544</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>111322</contig_pos>
        <strand>+</strand>
        <context>TTGAGTTTTY[A/T]TKWAAAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCTATTATCCTTATCATATCCCACACAATAACTGTAATTTTGAGTTTTT</left_flank>
        <right_flank>TGAAAAAATTTTATGAAAAAATGCAAATGGTGCCTACAGTAGCCGGGTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGAATATTTCGGATTTTTCGAATTTTTAGAATTTCCCATTTTCTAAATTATTGGATTTCTCGGAATGATCAGAATTCATTTAAAGTTATTATGTTAAGACTTTTCTCAATGAAACTTTCAAAAATTAAATTTTCTGGCTCTTCAAAATAAACGCCTTAAAAATAAGACATTTCAGGAATCCCCTCCAACAAAACGTACATGAATTGGTGGACCAATAACCCTGAAAATATTCCAAAAGTCTTAAAATCATCTGAGATTCTTCCCCTCCTGATCGGTGGTCTTCTCATTTGGCATTATTTATTTTCAATGATCTGTTTCATATTTTCATTTTGTGCAGAACGAGCAATCGCAACTTTGCTTTCTGGGTAACTTTTAAATTGCTATTTTCAGTAATTTGTTTTTTTCTTCTCAGAGATTACGAAAAACACCAACGCAAGTACATTTCCTCTATTATCCTTATCATATCCCACACAATAACTGTAATTTTGAGTTTTTATGAAAAAATTTTATGAAAAAATGCAAATGGTGCCTACAGTAGCCGGGTGTATGATATGTGTGGCGACGTCTTGTGTGGTAATTTGATTTTCCAATTTTTTAGAAACTTAAAAATTTTAGTTTTAATAATTCCAGCTTTTCATAATCATCCTAATCGTCAATTTGAAAATCAACATTCTGCAATCCAAAACTGGAAGTGGTGTAATTCTGTACACTTTGGCTTTTCGATTTCAAGTAAAAGAGAATATAAGAGCTTTGAAGGTGAAAGGAAATCTAAAAATTGAATTCAAAAAATGAACAAAAAATTCAGTTAGCGTATCGAGTTTTGGTCTGCATCGGAGTTTATATTTTTGTATTGTGTATTATTTTGTTCACACTATTTTTCGATGTGATTCCTTCGATGAATCAGATTTTGATATTTCTTTTGGAGAATTGCATTTATTTGTGAGTTTCTGCTTCTAAACATGTTTCTAGGGTTCATTTAGTCGGAGAACTGGAAAT</canonical>
            <polymorphic>TTTTTGAATATTTCGGATTTTTCGAATTTTTAGAATTTCCCATTTTCTAAATTATTGGATTTCTCGGAATGATCAGAATTCATTTAAAGTTATTATGTTAAGACTTTTCTCAATGAAACTTTCAAAAATTAAATTTTCTGGCTCTTCAAAATAAACGCCTTAAAAATAAGACATTTCAGGAATCCCCTCCAACAAAACGTACATGAATTGGTGGACCAATAACCCTGAAAATATTCCAAAAGTCTTAAAATCATCTGAGATTCTTCCCCTCCTGATCGGTGGTCTTCTCATTTGGCATTATTTATTTTCAATGATCTGTTTCATATTTTCATTTTGTGCAGAACGAGCAATCGCAACTTTGCTTTCTGGGTAACTTTTAAATTGCTATTTTCAGTAATTTGTTTTTTTCTTCTCAGAGATTACGAAAAACACCAACGCAAGTACATTTCCTCTATTATCCTTATCATATCCCACACAATAACTGTAATTTTGAGTTTTTWTGAAAAAATTTTATGAAAAAATGCAAATGGTGCCTACAGTAGCCGGGTGTATGATATGTGTGGCGACGTCTTGTGTGGTAATTTGATTTTCCAATTTTTTAGAAACTTAAAAATTTTAGTTTTAATAATTCCAGCTTTTCATAATCATCCTAATCGTCAATTTGAAAATCAACATTCTGCAATCCAAAACTGGAAGTGGTGTAATTCTGTACACTTTGGCTTTTCGATTTCAAGTAAAAGAGAATATAAGAGCTTTGAAGGTGAAAGGAAATCTAAAAATTGAATTCAAAAAATGAACAAAAAATTCAGTTAGCGTATCGAGTTTTGGTCTGCATCGGAGTTTATATTTTTGTATTGTGTATTATTTTGTTCACACTATTTTTCGATGTGATTCCTTCGATGAATCAGATTTTGATATTTCTTTTGGAGAATTGCATTTATTTGTGAGTTTCTGCTTCTAAACATGTTTCTAGGGTTCATTTAGTCGGAGAACTGGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTCAGAGATTACGAAAAACA</pcr_primer_p1>
		<pcr_primer_p2>GACGATTAGGATGATTATGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCTCAGAGATTACGAAAAACACCAACGCAAGTACATTTCCTCTATTATCCTTATCATATCCCACACAATAACTGTAATTTTGAGTTTTTATGAAAAAATTTTATGAAAAAATGCAAATGGTGCCTACAGTAGCCGGGTGTATGATATGTGTGGCGACGTCTTGTGTGGTAATTTGATTTTCCAATTTTTTAGAAACTTAAAAATTTTAGTTTTAATAATTCCAGCTTTTCATAATCATCCTAATCGTC</canonical_amplicon>
		<polymorphic_amplicon>CTTCTCAGAGATTACGAAAAACACCAACGCAAGTACATTTCCTCTATTATCCTTATCATATCCCACACAATAACTGTAATTTTGAGTTTTTWTGAAAAAATTTTATGAAAAAATGCAAATGGTGCCTACAGTAGCCGGGTGTATGATATGTGTGGCGACGTCTTGTGTGGTAATTTGATTTTCCAATTTTTTAGAAACTTAAAAATTTTAGTTTTAATAATTCCAGCTTTTCATAATCATCCTAATCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37545</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>111324</contig_pos>
        <strand>+</strand>
        <context>GAGTTTTYWT[G/T]WAAAAATTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTATTATCCTTATCATATCCCACACAATAACTGTAATTTTGAGTTTTTAT</left_flank>
        <right_flank>AAAAAATTTTATGAAAAAATGCAAATGGTGCCTACAGTAGCCGGGTGTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAATATTTCGGATTTTTCGAATTTTTAGAATTTCCCATTTTCTAAATTATTGGATTTCTCGGAATGATCAGAATTCATTTAAAGTTATTATGTTAAGACTTTTCTCAATGAAACTTTCAAAAATTAAATTTTCTGGCTCTTCAAAATAAACGCCTTAAAAATAAGACATTTCAGGAATCCCCTCCAACAAAACGTACATGAATTGGTGGACCAATAACCCTGAAAATATTCCAAAAGTCTTAAAATCATCTGAGATTCTTCCCCTCCTGATCGGTGGTCTTCTCATTTGGCATTATTTATTTTCAATGATCTGTTTCATATTTTCATTTTGTGCAGAACGAGCAATCGCAACTTTGCTTTCTGGGTAACTTTTAAATTGCTATTTTCAGTAATTTGTTTTTTTCTTCTCAGAGATTACGAAAAACACCAACGCAAGTACATTTCCTCTATTATCCTTATCATATCCCACACAATAACTGTAATTTTGAGTTTTTATGAAAAAATTTTATGAAAAAATGCAAATGGTGCCTACAGTAGCCGGGTGTATGATATGTGTGGCGACGTCTTGTGTGGTAATTTGATTTTCCAATTTTTTAGAAACTTAAAAATTTTAGTTTTAATAATTCCAGCTTTTCATAATCATCCTAATCGTCAATTTGAAAATCAACATTCTGCAATCCAAAACTGGAAGTGGTGTAATTCTGTACACTTTGGCTTTTCGATTTCAAGTAAAAGAGAATATAAGAGCTTTGAAGGTGAAAGGAAATCTAAAAATTGAATTCAAAAAATGAACAAAAAATTCAGTTAGCGTATCGAGTTTTGGTCTGCATCGGAGTTTATATTTTTGTATTGTGTATTATTTTGTTCACACTATTTTTCGATGTGATTCCTTCGATGAATCAGATTTTGATATTTCTTTTGGAGAATTGCATTTATTTGTGAGTTTCTGCTTCTAAACATGTTTCTAGGGTTCATTTAGTCGGAGAACTGGAAATTT</canonical>
            <polymorphic>TTTGAATATTTCGGATTTTTCGAATTTTTAGAATTTCCCATTTTCTAAATTATTGGATTTCTCGGAATGATCAGAATTCATTTAAAGTTATTATGTTAAGACTTTTCTCAATGAAACTTTCAAAAATTAAATTTTCTGGCTCTTCAAAATAAACGCCTTAAAAATAAGACATTTCAGGAATCCCCTCCAACAAAACGTACATGAATTGGTGGACCAATAACCCTGAAAATATTCCAAAAGTCTTAAAATCATCTGAGATTCTTCCCCTCCTGATCGGTGGTCTTCTCATTTGGCATTATTTATTTTCAATGATCTGTTTCATATTTTCATTTTGTGCAGAACGAGCAATCGCAACTTTGCTTTCTGGGTAACTTTTAAATTGCTATTTTCAGTAATTTGTTTTTTTCTTCTCAGAGATTACGAAAAACACCAACGCAAGTACATTTCCTCTATTATCCTTATCATATCCCACACAATAACTGTAATTTTGAGTTTTTATKAAAAAATTTTATGAAAAAATGCAAATGGTGCCTACAGTAGCCGGGTGTATGATATGTGTGGCGACGTCTTGTGTGGTAATTTGATTTTCCAATTTTTTAGAAACTTAAAAATTTTAGTTTTAATAATTCCAGCTTTTCATAATCATCCTAATCGTCAATTTGAAAATCAACATTCTGCAATCCAAAACTGGAAGTGGTGTAATTCTGTACACTTTGGCTTTTCGATTTCAAGTAAAAGAGAATATAAGAGCTTTGAAGGTGAAAGGAAATCTAAAAATTGAATTCAAAAAATGAACAAAAAATTCAGTTAGCGTATCGAGTTTTGGTCTGCATCGGAGTTTATATTTTTGTATTGTGTATTATTTTGTTCACACTATTTTTCGATGTGATTCCTTCGATGAATCAGATTTTGATATTTCTTTTGGAGAATTGCATTTATTTGTGAGTTTCTGCTTCTAAACATGTTTCTAGGGTTCATTTAGTCGGAGAACTGGAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTCAGAGATTACGAAAAACA</pcr_primer_p1>
		<pcr_primer_p2>GACGATTAGGATGATTATGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCTCAGAGATTACGAAAAACACCAACGCAAGTACATTTCCTCTATTATCCTTATCATATCCCACACAATAACTGTAATTTTGAGTTTTTATGAAAAAATTTTATGAAAAAATGCAAATGGTGCCTACAGTAGCCGGGTGTATGATATGTGTGGCGACGTCTTGTGTGGTAATTTGATTTTCCAATTTTTTAGAAACTTAAAAATTTTAGTTTTAATAATTCCAGCTTTTCATAATCATCCTAATCGTC</canonical_amplicon>
		<polymorphic_amplicon>CTTCTCAGAGATTACGAAAAACACCAACGCAAGTACATTTCCTCTATTATCCTTATCATATCCCACACAATAACTGTAATTTTGAGTTTTTATKAAAAAATTTTATGAAAAAATGCAAATGGTGCCTACAGTAGCCGGGTGTATGATATGTGTGGCGACGTCTTGTGTGGTAATTTGATTTTCCAATTTTTTAGAAACTTAAAAATTTTAGTTTTAATAATTCCAGCTTTTCATAATCATCCTAATCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37546</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>111325</contig_pos>
        <strand>+</strand>
        <context>AGTTTTYWTK[A/T]AAAAATTTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATTATCCTTATCATATCCCACACAATAACTGTAATTTTGAGTTTTTATG</left_flank>
        <right_flank>AAAAATTTTATGAAAAAATGCAAATGGTGCCTACAGTAGCCGGGTGTATG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAATATTTCGGATTTTTCGAATTTTTAGAATTTCCCATTTTCTAAATTATTGGATTTCTCGGAATGATCAGAATTCATTTAAAGTTATTATGTTAAGACTTTTCTCAATGAAACTTTCAAAAATTAAATTTTCTGGCTCTTCAAAATAAACGCCTTAAAAATAAGACATTTCAGGAATCCCCTCCAACAAAACGTACATGAATTGGTGGACCAATAACCCTGAAAATATTCCAAAAGTCTTAAAATCATCTGAGATTCTTCCCCTCCTGATCGGTGGTCTTCTCATTTGGCATTATTTATTTTCAATGATCTGTTTCATATTTTCATTTTGTGCAGAACGAGCAATCGCAACTTTGCTTTCTGGGTAACTTTTAAATTGCTATTTTCAGTAATTTGTTTTTTTCTTCTCAGAGATTACGAAAAACACCAACGCAAGTACATTTCCTCTATTATCCTTATCATATCCCACACAATAACTGTAATTTTGAGTTTTTATGAAAAAATTTTATGAAAAAATGCAAATGGTGCCTACAGTAGCCGGGTGTATGATATGTGTGGCGACGTCTTGTGTGGTAATTTGATTTTCCAATTTTTTAGAAACTTAAAAATTTTAGTTTTAATAATTCCAGCTTTTCATAATCATCCTAATCGTCAATTTGAAAATCAACATTCTGCAATCCAAAACTGGAAGTGGTGTAATTCTGTACACTTTGGCTTTTCGATTTCAAGTAAAAGAGAATATAAGAGCTTTGAAGGTGAAAGGAAATCTAAAAATTGAATTCAAAAAATGAACAAAAAATTCAGTTAGCGTATCGAGTTTTGGTCTGCATCGGAGTTTATATTTTTGTATTGTGTATTATTTTGTTCACACTATTTTTCGATGTGATTCCTTCGATGAATCAGATTTTGATATTTCTTTTGGAGAATTGCATTTATTTGTGAGTTTCTGCTTCTAAACATGTTTCTAGGGTTCATTTAGTCGGAGAACTGGAAATTTC</canonical>
            <polymorphic>TTGAATATTTCGGATTTTTCGAATTTTTAGAATTTCCCATTTTCTAAATTATTGGATTTCTCGGAATGATCAGAATTCATTTAAAGTTATTATGTTAAGACTTTTCTCAATGAAACTTTCAAAAATTAAATTTTCTGGCTCTTCAAAATAAACGCCTTAAAAATAAGACATTTCAGGAATCCCCTCCAACAAAACGTACATGAATTGGTGGACCAATAACCCTGAAAATATTCCAAAAGTCTTAAAATCATCTGAGATTCTTCCCCTCCTGATCGGTGGTCTTCTCATTTGGCATTATTTATTTTCAATGATCTGTTTCATATTTTCATTTTGTGCAGAACGAGCAATCGCAACTTTGCTTTCTGGGTAACTTTTAAATTGCTATTTTCAGTAATTTGTTTTTTTCTTCTCAGAGATTACGAAAAACACCAACGCAAGTACATTTCCTCTATTATCCTTATCATATCCCACACAATAACTGTAATTTTGAGTTTTTATGWAAAAATTTTATGAAAAAATGCAAATGGTGCCTACAGTAGCCGGGTGTATGATATGTGTGGCGACGTCTTGTGTGGTAATTTGATTTTCCAATTTTTTAGAAACTTAAAAATTTTAGTTTTAATAATTCCAGCTTTTCATAATCATCCTAATCGTCAATTTGAAAATCAACATTCTGCAATCCAAAACTGGAAGTGGTGTAATTCTGTACACTTTGGCTTTTCGATTTCAAGTAAAAGAGAATATAAGAGCTTTGAAGGTGAAAGGAAATCTAAAAATTGAATTCAAAAAATGAACAAAAAATTCAGTTAGCGTATCGAGTTTTGGTCTGCATCGGAGTTTATATTTTTGTATTGTGTATTATTTTGTTCACACTATTTTTCGATGTGATTCCTTCGATGAATCAGATTTTGATATTTCTTTTGGAGAATTGCATTTATTTGTGAGTTTCTGCTTCTAAACATGTTTCTAGGGTTCATTTAGTCGGAGAACTGGAAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTCAGAGATTACGAAAAACA</pcr_primer_p1>
		<pcr_primer_p2>GACGATTAGGATGATTATGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTCTCAGAGATTACGAAAAACACCAACGCAAGTACATTTCCTCTATTATCCTTATCATATCCCACACAATAACTGTAATTTTGAGTTTTTATGAAAAAATTTTATGAAAAAATGCAAATGGTGCCTACAGTAGCCGGGTGTATGATATGTGTGGCGACGTCTTGTGTGGTAATTTGATTTTCCAATTTTTTAGAAACTTAAAAATTTTAGTTTTAATAATTCCAGCTTTTCATAATCATCCTAATCGTC</canonical_amplicon>
		<polymorphic_amplicon>CTTCTCAGAGATTACGAAAAACACCAACGCAAGTACATTTCCTCTATTATCCTTATCATATCCCACACAATAACTGTAATTTTGAGTTTTTATGWAAAAATTTTATGAAAAAATGCAAATGGTGCCTACAGTAGCCGGGTGTATGATATGTGTGGCGACGTCTTGTGTGGTAATTTGATTTTCCAATTTTTTAGAAACTTAAAAATTTTAGTTTTAATAATTCCAGCTTTTCATAATCATCCTAATCGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37547</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>111773</contig_pos>
        <strand>+</strand>
        <context>TTTGTGAGTT[C/T]CTGCTTCTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAATCAGATTTTGATATTTCTTTTGGAGAATTGCATTTATTTGTGAGTT</left_flank>
        <right_flank>CTGCTTCTAAACATGTTTCTAGGGTTCATTTAGTCGGAGAACTGGAAATT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATTATCCTTATCATATCCCACACAATAACTGTAATTTTGAGTTTTTATGAAAAAATTTTATGAAAAAATGCAAATGGTGCCTACAGTAGCCGGGTGTATGATATGTGTGGCGACGTCTTGTGTGGTAATTTGATTTTCCAATTTTTTAGAAACTTAAAAATTTTAGTTTTAATAATTCCAGCTTTTCATAATCATCCTAATCGTCAATTTGAAAATCAACATTCTGCAATCCAAAACTGGAAGTGGTGTAATTCTGTACACTTTGGCTTTTCGATTTCAAGTAAAAGAGAATATAAGAGCTTTGAAGGTGAAAGGAAATCTAAAAATTGAATTCAAAAAATGAACAAAAAATTCAGTTAGCGTATCGAGTTTTGGTCTGCATCGGAGTTTATATTTTTGTATTGTGTATTATTTTGTTCACACTATTTTTCGATGTGATTCCTTCGATGAATCAGATTTTGATATTTCTTTTGGAGAATTGCATTTATTTGTGAGTTTCTGCTTCTAAACATGTTTCTAGGGTTCATTTAGTCGGAGAACTGGAAATTTCAAGATTCATAAACCTGAAAATCTAGCATTCTGAAACTTCTAAACTATAAATTTTTACAGATTTTATGATTCTGAATTTCTGAATTTCTGAATTCCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATCTCCGAATTTCTGAATTTCTGAATTTCTGAATGCCTGAATTTCCGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTCCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCT</canonical>
            <polymorphic>CTATTATCCTTATCATATCCCACACAATAACTGTAATTTTGAGTTTTTATGAAAAAATTTTATGAAAAAATGCAAATGGTGCCTACAGTAGCCGGGTGTATGATATGTGTGGCGACGTCTTGTGTGGTAATTTGATTTTCCAATTTTTTAGAAACTTAAAAATTTTAGTTTTAATAATTCCAGCTTTTCATAATCATCCTAATCGTCAATTTGAAAATCAACATTCTGCAATCCAAAACTGGAAGTGGTGTAATTCTGTACACTTTGGCTTTTCGATTTCAAGTAAAAGAGAATATAAGAGCTTTGAAGGTGAAAGGAAATCTAAAAATTGAATTCAAAAAATGAACAAAAAATTCAGTTAGCGTATCGAGTTTTGGTCTGCATCGGAGTTTATATTTTTGTATTGTGTATTATTTTGTTCACACTATTTTTCGATGTGATTCCTTCGATGAATCAGATTTTGATATTTCTTTTGGAGAATTGCATTTATTTGTGAGTTYCTGCTTCTAAACATGTTTCTAGGGTTCATTTAGTCGGAGAACTGGAAATTTCAAGATTCATAAACCTGAAAATCTAGCATTCTGAAACTTCTAAACTATAAATTTTTACAGATTTTATGATTCTGAATTTCTGAATTTCTGAATTCCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATCTCCGAATTTCTGAATTTCTGAATTTCTGAATGCCTGAATTTCCGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTCCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCAGTTAGCGTATCGAGTTT</pcr_primer_p1>
		<pcr_primer_p2>CAGAATGCTAGATTTTCAGGTT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ATTCAGTTAGCGTATCGAGTTTTGGTCTGCATCGGAGTTTATATTTTTGTATTGTGTATTATTTTGTTCACACTATTTTTCGATGTGATTCCTTCGATGAATCAGATTTTGATATTTCTTTTGGAGAATTGCATTTATTTGTGAGTTTCTGCTTCTAAACATGTTTCTAGGGTTCATTTAGTCGGAGAACTGGAAATTTCAAGATTCATAAACCTGAAAATCTAGCATTCTG</canonical_amplicon>
		<polymorphic_amplicon>ATTCAGTTAGCGTATCGAGTTTTGGTCTGCATCGGAGTTTATATTTTTGTATTGTGTATTATTTTGTTCACACTATTTTTCGATGTGATTCCTTCGATGAATCAGATTTTGATATTTCTTTTGGAGAATTGCATTTATTTGTGAGTTYCTGCTTCTAAACATGTTTCTAGGGTTCATTTAGTCGGAGAACTGGAAATTTCAAGATTCATAAACCTGAAAATCTAGCATTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37548</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>111808</contig_pos>
        <strand>+</strand>
        <context>TTCATTTAGT[C/T]GGAGAACTGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTATTTGTGAGTTTCTGCTTCTAAACATGTTTCTAGGGTTCATTTAGT</left_flank>
        <right_flank>GGAGAACTGGAAATTTCAAGATTCATAAACCTGAAAATCTAGCATTCTGA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTGAGTTTTTATGAAAAAATTTTATGAAAAAATGCAAATGGTGCCTACAGTAGCCGGGTGTATGATATGTGTGGCGACGTCTTGTGTGGTAATTTGATTTTCCAATTTTTTAGAAACTTAAAAATTTTAGTTTTAATAATTCCAGCTTTTCATAATCATCCTAATCGTCAATTTGAAAATCAACATTCTGCAATCCAAAACTGGAAGTGGTGTAATTCTGTACACTTTGGCTTTTCGATTTCAAGTAAAAGAGAATATAAGAGCTTTGAAGGTGAAAGGAAATCTAAAAATTGAATTCAAAAAATGAACAAAAAATTCAGTTAGCGTATCGAGTTTTGGTCTGCATCGGAGTTTATATTTTTGTATTGTGTATTATTTTGTTCACACTATTTTTCGATGTGATTCCTTCGATGAATCAGATTTTGATATTTCTTTTGGAGAATTGCATTTATTTGTGAGTTTCTGCTTCTAAACATGTTTCTAGGGTTCATTTAGTCGGAGAACTGGAAATTTCAAGATTCATAAACCTGAAAATCTAGCATTCTGAAACTTCTAAACTATAAATTTTTACAGATTTTATGATTCTGAATTTCTGAATTTCTGAATTCCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATCTCCGAATTTCTGAATTTCTGAATTTCTGAATGCCTGAATTTCCGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTCCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATCTCCGAATTTCTGAATTTCTGAATTTCTGAA</canonical>
            <polymorphic>ATTTTGAGTTTTTATGAAAAAATTTTATGAAAAAATGCAAATGGTGCCTACAGTAGCCGGGTGTATGATATGTGTGGCGACGTCTTGTGTGGTAATTTGATTTTCCAATTTTTTAGAAACTTAAAAATTTTAGTTTTAATAATTCCAGCTTTTCATAATCATCCTAATCGTCAATTTGAAAATCAACATTCTGCAATCCAAAACTGGAAGTGGTGTAATTCTGTACACTTTGGCTTTTCGATTTCAAGTAAAAGAGAATATAAGAGCTTTGAAGGTGAAAGGAAATCTAAAAATTGAATTCAAAAAATGAACAAAAAATTCAGTTAGCGTATCGAGTTTTGGTCTGCATCGGAGTTTATATTTTTGTATTGTGTATTATTTTGTTCACACTATTTTTCGATGTGATTCCTTCGATGAATCAGATTTTGATATTTCTTTTGGAGAATTGCATTTATTTGTGAGTTTCTGCTTCTAAACATGTTTCTAGGGTTCATTTAGTYGGAGAACTGGAAATTTCAAGATTCATAAACCTGAAAATCTAGCATTCTGAAACTTCTAAACTATAAATTTTTACAGATTTTATGATTCTGAATTTCTGAATTTCTGAATTCCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATCTCCGAATTTCTGAATTTCTGAATTTCTGAATGCCTGAATTTCCGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTCCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATCTCCGAATTTCTGAATTTCTGAATTTCTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>351 80 70 47 41 24 24 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 3</canonical_bands>
                <polymorphic_bands>351 127 70 41 24 24 16 16 16 16 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAATTGCATTTATTTGTGAGTT</pcr_primer_p1>
		<pcr_primer_p2>ATTCTATTGGATTTGAAGAATCA</pcr_primer_p2>
		<pcr_amplicon_size>655</pcr_amplicon_size>
		<canonical_amplicon>AGAATTGCATTTATTTGTGAGTTTCTGCTTCTAAACATGTTTCTAGGGTTCATTTAGTCGGAGAACTGGAAATTTCAAGAT</canonical_amplicon>
		<polymorphic_amplicon>AGAATTGCATTTATTTGTGAGTTTCTGCTTCTAAACATGTTTCTAGGGTTCATTTAGTYGGAGAACTGGAAATTTCAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37549</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>171891</contig_pos>
        <strand></strand>
        <context>AATTTCTATA[T/A]AGGCTTAGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TATCTGGCTCCCCTTATACAGTATAAATGGAAACGTGGACAATTTCTATA</left_flank>
        <right_flank>AGGCTTAGCAATCTTAGAGCTAATTTCCTACTGTATCACTGCTTTACTAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTTTTCTGTGACGGTATAACACCTGTTTTTGATATCACCCGCTTTCAGTAATTTAAGATTCTGATAAACCAAATGAATTTAAAGTTGAACTTTATTTGGACCGGTTTTTTATATTTATCGAATTTTCCGAGTTACAGATCTGCGATTAACAAGTTGCGTAAACTAAAAAGCAAAAAATGTCCAACAGGTGTAAAAATCCAAGAATCCAGACTCTAAAAAAAGTTTCCAAGAGTCAAAGATCTTAGTTTTTGTTTCCTAATTCTTGTTATCTGAAATAAACGCTTTTTTGGTTCCTCTTCGATTTTTTTTGCAATCAGTTAGTTAATATAATTCTATAATCTGATTTTTCTAAAATATGATTTTCTGCTTTTTTGCTGTTTTTTACAATTCATATATATTTTTTTTCAGTTCTAAAATGATAATTTACGTCGAAAGCACCTCTAGCACTATCTGGCTCCCCTTATACAGTATAAATGGAAACGTGGACAATTTCTATATAGGCTTAGCAATCTTAGAGCTAATTTCCTACTGTATCACTGCTTTACTAATTCTAAAGACTTGTATAATAGTTTTTAAATCCAAAAATTTCCATGAAAATATGAATATTCTATTCATCGGTCTAATTATTCAATGGTTCGAAGCATTCGTCTGTAAAGTTTTGGTTATGCCTTATCAAGTTGGCTTTTTACAAATTACCGAAAATTCTAGCAATGTTTATATCACTTGGTGGACAGCTGATACTCAAAATATGATTGATGTCCCTAATTTTTTCACCATTTTCCCTTTATTCCTTCCTGGTTTGCTAATCTGGCACTACGTATACTCAATGTTTATAGGAGTGACATGTGTGTCTATAGAACGGGTGTGTGCGACGTATTTTATCAGGTACAGTACTGGCCATAAAGAATGCGACAACTTGTTTTTTGACGATAACTTTTTGAAAACTCAACTTTTCAACTCGAATTTTTTACTGTAGACACATTGGAAAGTTACGAAAA</canonical>
            <polymorphic>AGTTTTTCTGTGACGGTATAACACCTGTTTTTGATATCACCCGCTTTCAGTAATTTAAGATTCTGATAAACCAAATGAATTTAAAGTTGAACTTTATTTGGACCGGTTTTTTATATTTATCGAATTTTCCGAGTTACAGATCTGCGATTAACAAGTTGCGTAAACTAAAAAGCAAAAAATGTCCAACAGGTGTAAAAATCCAAGAATCCAGACTCTAAAAAAAGTTTCCAAGAGTCAAAGATCTTAGTTTTTGTTTCCTAATTCTTGTTATCTGAAATAAACGCTTTTTTGGTTCCTCTTCGATTTTTTTTGCAATCAGTTAGTTAATATAATTCTATAATCTGATTTTTCTAAAATATGATTTTCTGCTTTTTTGCTGTTTTTTACAATTCATATATATTTTTTTTCAGTTCTAAAATGATAATTTACGTCGAAAGCACCTCTAGCACTATCTGGCTCCCCTTATACAGTATAAATGGAAACGTGGACAATTTCTATAWAGGCTTAGCAATCTTAGAGCTAATTTCCTACTGTATCACTGCTTTACTAATTCTAAAGACTTGTATAATAGTTTTTAAATCCAAAAATTTCCATGAAAATATGAATATTCTATTCATCGGTCTAATTATTCAATGGTTCGAAGCATTCGTCTGTAAAGTTTTGGTTATGCCTTATCAAGTTGGCTTTTTACAAATTACCGAAAATTCTAGCAATGTTTATATCACTTGGTGGACAGCTGATACTCAAAATATGATTGATGTCCCTAATTTTTTCACCATTTTCCCTTTATTCCTTCCTGGTTTGCTAATCTGGCACTACGTATACTCAATGTTTATAGGAGTGACATGTGTGTCTATAGAACGGGTGTGTGCGACGTATTTTATCAGGTACAGTACTGGCCATAAAGAATGCGACAACTTGTTTTTTGACGATAACTTTTTGAAAACTCAACTTTTCAACTCGAATTTTTTACTGTAGACACATTGGAAAGTTACGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATGATAATTTACGTCGAAAG</pcr_primer_p1>
		<pcr_primer_p2>ACCAAAACTTTACAGACGAATG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAATGATAATTTACGTCGAAAGCACCTCTAGCACTATCTGGCTCCCCTTATACAGTATAAATGGAAACGTGGACAATTTCTATATAGGCTTAGCAATCTTAGAGCTAATTTCCTACTGTATCACTGCTTTACTAATTCTAAAGACTTGTATAATAGTTTTTAAATCCAAAAATTTCCATGAAAATATGAATATTCTATTCATCGGTCTAATTATTCAATGGTTCGAAGCATTCGTCTGTAAAGTTTTGGT</canonical_amplicon>
		<polymorphic_amplicon>AAAATGATAATTTACGTCGAAAGCACCTCTAGCACTATCTGGCTCCCCTTATACAGTATAAATGGAAACGTGGACAATTTCTATAWAGGCTTAGCAATCTTAGAGCTAATTTCCTACTGTATCACTGCTTTACTAATTCTAAAGACTTGTATAATAGTTTTTAAATCCAAAAATTTCCATGAAAATATGAATATTCTATTCATCGGTCTAATTATTCAATGGTTCGAAGCATTCGTCTGTAAAGTTTTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37550</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>171905</contig_pos>
        <strand></strand>
        <context>CTTAGCAATC[T/G]TAGAGCTAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TATACAGTATAAATGGAAACGTGGACAATTTCTATATAGGCTTAGCAATC</left_flank>
        <right_flank>TAGAGCTAATTTCCTACTGTATCACTGCTTTACTAATTCTAAAGACTTGT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTATAACACCTGTTTTTGATATCACCCGCTTTCAGTAATTTAAGATTCTGATAAACCAAATGAATTTAAAGTTGAACTTTATTTGGACCGGTTTTTTATATTTATCGAATTTTCCGAGTTACAGATCTGCGATTAACAAGTTGCGTAAACTAAAAAGCAAAAAATGTCCAACAGGTGTAAAAATCCAAGAATCCAGACTCTAAAAAAAGTTTCCAAGAGTCAAAGATCTTAGTTTTTGTTTCCTAATTCTTGTTATCTGAAATAAACGCTTTTTTGGTTCCTCTTCGATTTTTTTTGCAATCAGTTAGTTAATATAATTCTATAATCTGATTTTTCTAAAATATGATTTTCTGCTTTTTTGCTGTTTTTTACAATTCATATATATTTTTTTTCAGTTCTAAAATGATAATTTACGTCGAAAGCACCTCTAGCACTATCTGGCTCCCCTTATACAGTATAAATGGAAACGTGGACAATTTCTATATAGGCTTAGCAATCTTAGAGCTAATTTCCTACTGTATCACTGCTTTACTAATTCTAAAGACTTGTATAATAGTTTTTAAATCCAAAAATTTCCATGAAAATATGAATATTCTATTCATCGGTCTAATTATTCAATGGTTCGAAGCATTCGTCTGTAAAGTTTTGGTTATGCCTTATCAAGTTGGCTTTTTACAAATTACCGAAAATTCTAGCAATGTTTATATCACTTGGTGGACAGCTGATACTCAAAATATGATTGATGTCCCTAATTTTTTCACCATTTTCCCTTTATTCCTTCCTGGTTTGCTAATCTGGCACTACGTATACTCAATGTTTATAGGAGTGACATGTGTGTCTATAGAACGGGTGTGTGCGACGTATTTTATCAGGTACAGTACTGGCCATAAAGAATGCGACAACTTGTTTTTTGACGATAACTTTTTGAAAACTCAACTTTTCAACTCGAATTTTTTACTGTAGACACATTGGAAAGTTACGAAAACTTGCGTACTTGGA</canonical>
            <polymorphic>GGTATAACACCTGTTTTTGATATCACCCGCTTTCAGTAATTTAAGATTCTGATAAACCAAATGAATTTAAAGTTGAACTTTATTTGGACCGGTTTTTTATATTTATCGAATTTTCCGAGTTACAGATCTGCGATTAACAAGTTGCGTAAACTAAAAAGCAAAAAATGTCCAACAGGTGTAAAAATCCAAGAATCCAGACTCTAAAAAAAGTTTCCAAGAGTCAAAGATCTTAGTTTTTGTTTCCTAATTCTTGTTATCTGAAATAAACGCTTTTTTGGTTCCTCTTCGATTTTTTTTGCAATCAGTTAGTTAATATAATTCTATAATCTGATTTTTCTAAAATATGATTTTCTGCTTTTTTGCTGTTTTTTACAATTCATATATATTTTTTTTCAGTTCTAAAATGATAATTTACGTCGAAAGCACCTCTAGCACTATCTGGCTCCCCTTATACAGTATAAATGGAAACGTGGACAATTTCTATATAGGCTTAGCAATCKTAGAGCTAATTTCCTACTGTATCACTGCTTTACTAATTCTAAAGACTTGTATAATAGTTTTTAAATCCAAAAATTTCCATGAAAATATGAATATTCTATTCATCGGTCTAATTATTCAATGGTTCGAAGCATTCGTCTGTAAAGTTTTGGTTATGCCTTATCAAGTTGGCTTTTTACAAATTACCGAAAATTCTAGCAATGTTTATATCACTTGGTGGACAGCTGATACTCAAAATATGATTGATGTCCCTAATTTTTTCACCATTTTCCCTTTATTCCTTCCTGGTTTGCTAATCTGGCACTACGTATACTCAATGTTTATAGGAGTGACATGTGTGTCTATAGAACGGGTGTGTGCGACGTATTTTATCAGGTACAGTACTGGCCATAAAGAATGCGACAACTTGTTTTTTGACGATAACTTTTTGAAAACTCAACTTTTCAACTCGAATTTTTTACTGTAGACACATTGGAAAGTTACGAAAACTTGCGTACTTGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 261 229 9</canonical_bands>
                <polymorphic_bands>510 261 229</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATGATAATTTACGTCGAAAG</pcr_primer_p1>
		<pcr_primer_p2>ACCAAAACTTTACAGACGAATG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAATGATAATTTACGTCGAAAGCACCTCTAGCACTATCTGGCTCCCCTTATACAGTATAAATGGAAACGTGGACAATTTCTATATAGGCTTAGCAATCTTAGAGCTAATTTCCTACTGTATCACTGCTTTACTAATTCTAAAGACTTGTATAATAGTTTTTAAATCCAAAAATTTCCATGAAAATATGAATATTCTATTCATCGGTCTAATTATTCAATGGTTCGAAGCATTCGTCTGTAAAGTTTTGGT</canonical_amplicon>
		<polymorphic_amplicon>AAAATGATAATTTACGTCGAAAGCACCTCTAGCACTATCTGGCTCCCCTTATACAGTATAAATGGAAACGTGGACAATTTCTATATAGGCTTAGCAATCKTAGAGCTAATTTCCTACTGTATCACTGCTTTACTAATTCTAAAGACTTGTATAATAGTTTTTAAATCCAAAAATTTCCATGAAAATATGAATATTCTATTCATCGGTCTAATTATTCAATGGTTCGAAGCATTCGTCTGTAAAGTTTTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37551</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>171934</contig_pos>
        <strand></strand>
        <context>GTATCACTGC[T/G]KTACTAATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTCTATATAGGCTTAGCAATCTTAGAGCTAATTTCCTACTGTATCACTGC</left_flank>
        <right_flank>TTACTAATTCTAAAGACTTGTATAATAGTTTTTAAATCCAAAAATTTCCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTCAGTAATTTAAGATTCTGATAAACCAAATGAATTTAAAGTTGAACTTTATTTGGACCGGTTTTTTATATTTATCGAATTTTCCGAGTTACAGATCTGCGATTAACAAGTTGCGTAAACTAAAAAGCAAAAAATGTCCAACAGGTGTAAAAATCCAAGAATCCAGACTCTAAAAAAAGTTTCCAAGAGTCAAAGATCTTAGTTTTTGTTTCCTAATTCTTGTTATCTGAAATAAACGCTTTTTTGGTTCCTCTTCGATTTTTTTTGCAATCAGTTAGTTAATATAATTCTATAATCTGATTTTTCTAAAATATGATTTTCTGCTTTTTTGCTGTTTTTTACAATTCATATATATTTTTTTTCAGTTCTAAAATGATAATTTACGTCGAAAGCACCTCTAGCACTATCTGGCTCCCCTTATACAGTATAAATGGAAACGTGGACAATTTCTATATAGGCTTAGCAATCTTAGAGCTAATTTCCTACTGTATCACTGCTTTACTAATTCTAAAGACTTGTATAATAGTTTTTAAATCCAAAAATTTCCATGAAAATATGAATATTCTATTCATCGGTCTAATTATTCAATGGTTCGAAGCATTCGTCTGTAAAGTTTTGGTTATGCCTTATCAAGTTGGCTTTTTACAAATTACCGAAAATTCTAGCAATGTTTATATCACTTGGTGGACAGCTGATACTCAAAATATGATTGATGTCCCTAATTTTTTCACCATTTTCCCTTTATTCCTTCCTGGTTTGCTAATCTGGCACTACGTATACTCAATGTTTATAGGAGTGACATGTGTGTCTATAGAACGGGTGTGTGCGACGTATTTTATCAGGTACAGTACTGGCCATAAAGAATGCGACAACTTGTTTTTTGACGATAACTTTTTGAAAACTCAACTTTTCAACTCGAATTTTTTACTGTAGACACATTGGAAAGTTACGAAAACTTGCGTACTTGGAAATTGCATCATCTTGCAAACAAAATTTTT</canonical>
            <polymorphic>CTTTCAGTAATTTAAGATTCTGATAAACCAAATGAATTTAAAGTTGAACTTTATTTGGACCGGTTTTTTATATTTATCGAATTTTCCGAGTTACAGATCTGCGATTAACAAGTTGCGTAAACTAAAAAGCAAAAAATGTCCAACAGGTGTAAAAATCCAAGAATCCAGACTCTAAAAAAAGTTTCCAAGAGTCAAAGATCTTAGTTTTTGTTTCCTAATTCTTGTTATCTGAAATAAACGCTTTTTTGGTTCCTCTTCGATTTTTTTTGCAATCAGTTAGTTAATATAATTCTATAATCTGATTTTTCTAAAATATGATTTTCTGCTTTTTTGCTGTTTTTTACAATTCATATATATTTTTTTTCAGTTCTAAAATGATAATTTACGTCGAAAGCACCTCTAGCACTATCTGGCTCCCCTTATACAGTATAAATGGAAACGTGGACAATTTCTATATAGGCTTAGCAATCTTAGAGCTAATTTCCTACTGTATCACTGCKTTACTAATTCTAAAGACTTGTATAATAGTTTTTAAATCCAAAAATTTCCATGAAAATATGAATATTCTATTCATCGGTCTAATTATTCAATGGTTCGAAGCATTCGTCTGTAAAGTTTTGGTTATGCCTTATCAAGTTGGCTTTTTACAAATTACCGAAAATTCTAGCAATGTTTATATCACTTGGTGGACAGCTGATACTCAAAATATGATTGATGTCCCTAATTTTTTCACCATTTTCCCTTTATTCCTTCCTGGTTTGCTAATCTGGCACTACGTATACTCAATGTTTATAGGAGTGACATGTGTGTCTATAGAACGGGTGTGTGCGACGTATTTTATCAGGTACAGTACTGGCCATAAAGAATGCGACAACTTGTTTTTTGACGATAACTTTTTGAAAACTCAACTTTTCAACTCGAATTTTTTACTGTAGACACATTGGAAAGTTACGAAAACTTGCGTACTTGGAAATTGCATCATCTTGCAAACAAAATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATGATAATTTACGTCGAAAG</pcr_primer_p1>
		<pcr_primer_p2>ACCAAAACTTTACAGACGAATG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAATGATAATTTACGTCGAAAGCACCTCTAGCACTATCTGGCTCCCCTTATACAGTATAAATGGAAACGTGGACAATTTCTATATAGGCTTAGCAATCTTAGAGCTAATTTCCTACTGTATCACTGCTTTACTAATTCTAAAGACTTGTATAATAGTTTTTAAATCCAAAAATTTCCATGAAAATATGAATATTCTATTCATCGGTCTAATTATTCAATGGTTCGAAGCATTCGTCTGTAAAGTTTTGGT</canonical_amplicon>
		<polymorphic_amplicon>AAAATGATAATTTACGTCGAAAGCACCTCTAGCACTATCTGGCTCCCCTTATACAGTATAAATGGAAACGTGGACAATTTCTATATAGGCTTAGCAATCTTAGAGCTAATTTCCTACTGTATCACTGCKTTACTAATTCTAAAGACTTGTATAATAGTTTTTAAATCCAAAAATTTCCATGAAAATATGAATATTCTATTCATCGGTCTAATTATTCAATGGTTCGAAGCATTCGTCTGTAAAGTTTTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37552</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>171935</contig_pos>
        <strand></strand>
        <context>TATCACTGCK[T/G]TACTAATTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TCTATATAGGCTTAGCAATCTTAGAGCTAATTTCCTACTGTATCACTGCT</left_flank>
        <right_flank>TACTAATTCTAAAGACTTGTATAATAGTTTTTAAATCCAAAAATTTCCAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAGTAATTTAAGATTCTGATAAACCAAATGAATTTAAAGTTGAACTTTATTTGGACCGGTTTTTTATATTTATCGAATTTTCCGAGTTACAGATCTGCGATTAACAAGTTGCGTAAACTAAAAAGCAAAAAATGTCCAACAGGTGTAAAAATCCAAGAATCCAGACTCTAAAAAAAGTTTCCAAGAGTCAAAGATCTTAGTTTTTGTTTCCTAATTCTTGTTATCTGAAATAAACGCTTTTTTGGTTCCTCTTCGATTTTTTTTGCAATCAGTTAGTTAATATAATTCTATAATCTGATTTTTCTAAAATATGATTTTCTGCTTTTTTGCTGTTTTTTACAATTCATATATATTTTTTTTCAGTTCTAAAATGATAATTTACGTCGAAAGCACCTCTAGCACTATCTGGCTCCCCTTATACAGTATAAATGGAAACGTGGACAATTTCTATATAGGCTTAGCAATCTTAGAGCTAATTTCCTACTGTATCACTGCTTTACTAATTCTAAAGACTTGTATAATAGTTTTTAAATCCAAAAATTTCCATGAAAATATGAATATTCTATTCATCGGTCTAATTATTCAATGGTTCGAAGCATTCGTCTGTAAAGTTTTGGTTATGCCTTATCAAGTTGGCTTTTTACAAATTACCGAAAATTCTAGCAATGTTTATATCACTTGGTGGACAGCTGATACTCAAAATATGATTGATGTCCCTAATTTTTTCACCATTTTCCCTTTATTCCTTCCTGGTTTGCTAATCTGGCACTACGTATACTCAATGTTTATAGGAGTGACATGTGTGTCTATAGAACGGGTGTGTGCGACGTATTTTATCAGGTACAGTACTGGCCATAAAGAATGCGACAACTTGTTTTTTGACGATAACTTTTTGAAAACTCAACTTTTCAACTCGAATTTTTTACTGTAGACACATTGGAAAGTTACGAAAACTTGCGTACTTGGAAATTGCATCATCTTGCAAACAAAATTTTTT</canonical>
            <polymorphic>TTTCAGTAATTTAAGATTCTGATAAACCAAATGAATTTAAAGTTGAACTTTATTTGGACCGGTTTTTTATATTTATCGAATTTTCCGAGTTACAGATCTGCGATTAACAAGTTGCGTAAACTAAAAAGCAAAAAATGTCCAACAGGTGTAAAAATCCAAGAATCCAGACTCTAAAAAAAGTTTCCAAGAGTCAAAGATCTTAGTTTTTGTTTCCTAATTCTTGTTATCTGAAATAAACGCTTTTTTGGTTCCTCTTCGATTTTTTTTGCAATCAGTTAGTTAATATAATTCTATAATCTGATTTTTCTAAAATATGATTTTCTGCTTTTTTGCTGTTTTTTACAATTCATATATATTTTTTTTCAGTTCTAAAATGATAATTTACGTCGAAAGCACCTCTAGCACTATCTGGCTCCCCTTATACAGTATAAATGGAAACGTGGACAATTTCTATATAGGCTTAGCAATCTTAGAGCTAATTTCCTACTGTATCACTGCTKTACTAATTCTAAAGACTTGTATAATAGTTTTTAAATCCAAAAATTTCCATGAAAATATGAATATTCTATTCATCGGTCTAATTATTCAATGGTTCGAAGCATTCGTCTGTAAAGTTTTGGTTATGCCTTATCAAGTTGGCTTTTTACAAATTACCGAAAATTCTAGCAATGTTTATATCACTTGGTGGACAGCTGATACTCAAAATATGATTGATGTCCCTAATTTTTTCACCATTTTCCCTTTATTCCTTCCTGGTTTGCTAATCTGGCACTACGTATACTCAATGTTTATAGGAGTGACATGTGTGTCTATAGAACGGGTGTGTGCGACGTATTTTATCAGGTACAGTACTGGCCATAAAGAATGCGACAACTTGTTTTTTGACGATAACTTTTTGAAAACTCAACTTTTCAACTCGAATTTTTTACTGTAGACACATTGGAAAGTTACGAAAACTTGCGTACTTGGAAATTGCATCATCTTGCAAACAAAATTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATGATAATTTACGTCGAAAG</pcr_primer_p1>
		<pcr_primer_p2>ACCAAAACTTTACAGACGAATG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAATGATAATTTACGTCGAAAGCACCTCTAGCACTATCTGGCTCCCCTTATACAGTATAAATGGAAACGTGGACAATTTCTATATAGGCTTAGCAATCTTAGAGCTAATTTCCTACTGTATCACTGCTTTACTAATTCTAAAGACTTGTATAATAGTTTTTAAATCCAAAAATTTCCATGAAAATATGAATATTCTATTCATCGGTCTAATTATTCAATGGTTCGAAGCATTCGTCTGTAAAGTTTTGGT</canonical_amplicon>
		<polymorphic_amplicon>AAAATGATAATTTACGTCGAAAGCACCTCTAGCACTATCTGGCTCCCCTTATACAGTATAAATGGAAACGTGGACAATTTCTATATAGGCTTAGCAATCTTAGAGCTAATTTCCTACTGTATCACTGCTKTACTAATTCTAAAGACTTGTATAATAGTTTTTAAATCCAAAAATTTCCATGAAAATATGAATATTCTATTCATCGGTCTAATTATTCAATGGTTCGAAGCATTCGTCTGTAAAGTTTTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37553</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>171978</contig_pos>
        <strand></strand>
        <context>AAATCCAAAA[A/G]TTTCCATGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CACTGCTTTACTAATTCTAAAGACTTGTATAATAGTTTTTAAATCCAAAA</left_flank>
        <right_flank>TTTCCATGAAAATATGAATATTCTATTCATCGGTCTAATTATTCAATGGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAACTTTATTTGGACCGGTTTTTTATATTTATCGAATTTTCCGAGTTACAGATCTGCGATTAACAAGTTGCGTAAACTAAAAAGCAAAAAATGTCCAACAGGTGTAAAAATCCAAGAATCCAGACTCTAAAAAAAGTTTCCAAGAGTCAAAGATCTTAGTTTTTGTTTCCTAATTCTTGTTATCTGAAATAAACGCTTTTTTGGTTCCTCTTCGATTTTTTTTGCAATCAGTTAGTTAATATAATTCTATAATCTGATTTTTCTAAAATATGATTTTCTGCTTTTTTGCTGTTTTTTACAATTCATATATATTTTTTTTCAGTTCTAAAATGATAATTTACGTCGAAAGCACCTCTAGCACTATCTGGCTCCCCTTATACAGTATAAATGGAAACGTGGACAATTTCTATATAGGCTTAGCAATCTTAGAGCTAATTTCCTACTGTATCACTGCTTTACTAATTCTAAAGACTTGTATAATAGTTTTTAAATCCAAAAATTTCCATGAAAATATGAATATTCTATTCATCGGTCTAATTATTCAATGGTTCGAAGCATTCGTCTGTAAAGTTTTGGTTATGCCTTATCAAGTTGGCTTTTTACAAATTACCGAAAATTCTAGCAATGTTTATATCACTTGGTGGACAGCTGATACTCAAAATATGATTGATGTCCCTAATTTTTTCACCATTTTCCCTTTATTCCTTCCTGGTTTGCTAATCTGGCACTACGTATACTCAATGTTTATAGGAGTGACATGTGTGTCTATAGAACGGGTGTGTGCGACGTATTTTATCAGGTACAGTACTGGCCATAAAGAATGCGACAACTTGTTTTTTGACGATAACTTTTTGAAAACTCAACTTTTCAACTCGAATTTTTTACTGTAGACACATTGGAAAGTTACGAAAACTTGCGTACTTGGAAATTGCATCATCTTGCAAACAAAATTTTTTTTCAATTGTTTTCATTTTTTTTTCATTTTGCATATTTTTCATG</canonical>
            <polymorphic>TGAACTTTATTTGGACCGGTTTTTTATATTTATCGAATTTTCCGAGTTACAGATCTGCGATTAACAAGTTGCGTAAACTAAAAAGCAAAAAATGTCCAACAGGTGTAAAAATCCAAGAATCCAGACTCTAAAAAAAGTTTCCAAGAGTCAAAGATCTTAGTTTTTGTTTCCTAATTCTTGTTATCTGAAATAAACGCTTTTTTGGTTCCTCTTCGATTTTTTTTGCAATCAGTTAGTTAATATAATTCTATAATCTGATTTTTCTAAAATATGATTTTCTGCTTTTTTGCTGTTTTTTACAATTCATATATATTTTTTTTCAGTTCTAAAATGATAATTTACGTCGAAAGCACCTCTAGCACTATCTGGCTCCCCTTATACAGTATAAATGGAAACGTGGACAATTTCTATATAGGCTTAGCAATCTTAGAGCTAATTTCCTACTGTATCACTGCTTTACTAATTCTAAAGACTTGTATAATAGTTTTTAAATCCAAAARTTTCCATGAAAATATGAATATTCTATTCATCGGTCTAATTATTCAATGGTTCGAAGCATTCGTCTGTAAAGTTTTGGTTATGCCTTATCAAGTTGGCTTTTTACAAATTACCGAAAATTCTAGCAATGTTTATATCACTTGGTGGACAGCTGATACTCAAAATATGATTGATGTCCCTAATTTTTTCACCATTTTCCCTTTATTCCTTCCTGGTTTGCTAATCTGGCACTACGTATACTCAATGTTTATAGGAGTGACATGTGTGTCTATAGAACGGGTGTGTGCGACGTATTTTATCAGGTACAGTACTGGCCATAAAGAATGCGACAACTTGTTTTTTGACGATAACTTTTTGAAAACTCAACTTTTCAACTCGAATTTTTTACTGTAGACACATTGGAAAGTTACGAAAACTTGCGTACTTGGAAATTGCATCATCTTGCAAACAAAATTTTTTTTCAATTGTTTTCATTTTTTTTTCATTTTGCATATTTTTCATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>463 261 117 73 51 35</canonical_bands>
                <polymorphic_bands>580 261 73 51 35</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>198 137 71 69 67 63 57 51 40 38 37 35 35 32 27 22 11 10</canonical_bands>
                <polymorphic_bands>198 137 75 71 69 67 63 57 51 40 35 35 32 27 22 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATGATAATTTACGTCGAAAG</pcr_primer_p1>
		<pcr_primer_p2>ACCAAAACTTTACAGACGAATG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAATGATAATTTACGTCGAAAGCACCTCTAGCACTATCTGGCTCCCCTTATACAGTATAAATGGAAACGTGGACAATTTCTATATAGGCTTAGCAATCTTAGAGCTAATTTCCTACTGTATCACTGCTTTACTAATTCTAAAGACTTGTATAATAGTTTTTAAATCCAAAAATTTCCATGAAAATATGAATATTCTATTCATCGGTCTAATTATTCAATGGTTCGAAGCATTCGTCTGTAAAGTTTTGGT</canonical_amplicon>
		<polymorphic_amplicon>AAAATGATAATTTACGTCGAAAGCACCTCTAGCACTATCTGGCTCCCCTTATACAGTATAAATGGAAACGTGGACAATTTCTATATAGGCTTAGCAATCTTAGAGCTAATTTCCTACTGTATCACTGCTTTACTAATTCTAAAGACTTGTATAATAGTTTTTAAATCCAAAARTTTCCATGAAAATATGAATATTCTATTCATCGGTCTAATTATTCAATGGTTCGAAGCATTCGTCTGTAAAGTTTTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37554</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>172101</contig_pos>
        <strand></strand>
        <context>GAAAATTCTA[G/A]CAATGTTTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTGGTTATGCCTTATCAAGTTGGCTTTTTACAAATTACCGAAAATTCTA</left_flank>
        <right_flank>CAATGTTTATATCACTTGGTGGACAGCTGATACTCAAAATATGATTGATG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACTCTAAAAAAAGTTTCCAAGAGTCAAAGATCTTAGTTTTTGTTTCCTAATTCTTGTTATCTGAAATAAACGCTTTTTTGGTTCCTCTTCGATTTTTTTTGCAATCAGTTAGTTAATATAATTCTATAATCTGATTTTTCTAAAATATGATTTTCTGCTTTTTTGCTGTTTTTTACAATTCATATATATTTTTTTTCAGTTCTAAAATGATAATTTACGTCGAAAGCACCTCTAGCACTATCTGGCTCCCCTTATACAGTATAAATGGAAACGTGGACAATTTCTATATAGGCTTAGCAATCTTAGAGCTAATTTCCTACTGTATCACTGCTTTACTAATTCTAAAGACTTGTATAATAGTTTTTAAATCCAAAAATTTCCATGAAAATATGAATATTCTATTCATCGGTCTAATTATTCAATGGTTCGAAGCATTCGTCTGTAAAGTTTTGGTTATGCCTTATCAAGTTGGCTTTTTACAAATTACCGAAAATTCTAGCAATGTTTATATCACTTGGTGGACAGCTGATACTCAAAATATGATTGATGTCCCTAATTTTTTCACCATTTTCCCTTTATTCCTTCCTGGTTTGCTAATCTGGCACTACGTATACTCAATGTTTATAGGAGTGACATGTGTGTCTATAGAACGGGTGTGTGCGACGTATTTTATCAGGTACAGTACTGGCCATAAAGAATGCGACAACTTGTTTTTTGACGATAACTTTTTGAAAACTCAACTTTTCAACTCGAATTTTTTACTGTAGACACATTGGAAAGTTACGAAAACTTGCGTACTTGGAAATTGCATCATCTTGCAAACAAAATTTTTTTTCAATTGTTTTCATTTTTTTTTCATTTTGCATATTTTTCATGATTTTTGGTTTTTTTAAATAAAGTTGAAAGACAACTAATTGGAATTAGTTTTAGTTATTGTTTTTCAGATATGGTTAGACCATTCGGGAAAAAATCCTTCTCTGTGGACGAGCGAAAAAGCAT</canonical>
            <polymorphic>GACTCTAAAAAAAGTTTCCAAGAGTCAAAGATCTTAGTTTTTGTTTCCTAATTCTTGTTATCTGAAATAAACGCTTTTTTGGTTCCTCTTCGATTTTTTTTGCAATCAGTTAGTTAATATAATTCTATAATCTGATTTTTCTAAAATATGATTTTCTGCTTTTTTGCTGTTTTTTACAATTCATATATATTTTTTTTCAGTTCTAAAATGATAATTTACGTCGAAAGCACCTCTAGCACTATCTGGCTCCCCTTATACAGTATAAATGGAAACGTGGACAATTTCTATATAGGCTTAGCAATCTTAGAGCTAATTTCCTACTGTATCACTGCTTTACTAATTCTAAAGACTTGTATAATAGTTTTTAAATCCAAAAATTTCCATGAAAATATGAATATTCTATTCATCGGTCTAATTATTCAATGGTTCGAAGCATTCGTCTGTAAAGTTTTGGTTATGCCTTATCAAGTTGGCTTTTTACAAATTACCGAAAATTCTARCAATGTTTATATCACTTGGTGGACAGCTGATACTCAAAATATGATTGATGTCCCTAATTTTTTCACCATTTTCCCTTTATTCCTTCCTGGTTTGCTAATCTGGCACTACGTATACTCAATGTTTATAGGAGTGACATGTGTGTCTATAGAACGGGTGTGTGCGACGTATTTTATCAGGTACAGTACTGGCCATAAAGAATGCGACAACTTGTTTTTTGACGATAACTTTTTGAAAACTCAACTTTTCAACTCGAATTTTTTACTGTAGACACATTGGAAAGTTACGAAAACTTGCGTACTTGGAAATTGCATCATCTTGCAAACAAAATTTTTTTTCAATTGTTTTCATTTTTTTTTCATTTTGCATATTTTTCATGATTTTTGGTTTTTTTAAATAAAGTTGAAAGACAACTAATTGGAATTAGTTTTAGTTATTGTTTTTCAGATATGGTTAGACCATTCGGGAAAAAATCCTTCTCTGTGGACGAGCGAAAAAGCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 264 233</canonical_bands>
                <polymorphic_bands>767 233</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTATTCATCGGTCTAATTATTCA</pcr_primer_p1>
		<pcr_primer_p2>CATGTCACTCCTATAAACATTGA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TCTATTCATCGGTCTAATTATTCAATGGTTCGAAGCATTCGTCTGTAAAGTTTTGGTTATGCCTTATCAAGTTGGCTTTTTACAAATTACCGAAAATTCTAGCAATGTTTATATCACTTGGTGGACAGCTGATACTCAAAATATGATTGATGTCCCTAATTTTTTCACCATTTTCCCTTTATTCCTTCCTGGTTTGCTAATCTGGCACTACGTATACTCAATGTTTATAGGAGTGACATG</canonical_amplicon>
		<polymorphic_amplicon>TCTATTCATCGGTCTAATTATTCAATGGTTCGAAGCATTCGTCTGTAAAGTTTTGGTTATGCCTTATCAAGTTGGCTTTTTACAAATTACCGAAAATTCTARCAATGTTTATATCACTTGGTGGACAGCTGATACTCAAAATATGATTGATGTCCCTAATTTTTTCACCATTTTCCCTTTATTCCTTCCTGGTTTGCTAATCTGGCACTACGTATACTCAATGTTTATAGGAGTGACATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37555</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>172129</contig_pos>
        <strand></strand>
        <context>GGTGGACAGC[T/C]GATACTCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTACAAATTACCGAAAATTCTAGCAATGTTTATATCACTTGGTGGACAGC</left_flank>
        <right_flank>GATACTCAAAATATGATTGATGTCCCTAATTTTTTCACCATTTTCCCTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATCTTAGTTTTTGTTTCCTAATTCTTGTTATCTGAAATAAACGCTTTTTTGGTTCCTCTTCGATTTTTTTTGCAATCAGTTAGTTAATATAATTCTATAATCTGATTTTTCTAAAATATGATTTTCTGCTTTTTTGCTGTTTTTTACAATTCATATATATTTTTTTTCAGTTCTAAAATGATAATTTACGTCGAAAGCACCTCTAGCACTATCTGGCTCCCCTTATACAGTATAAATGGAAACGTGGACAATTTCTATATAGGCTTAGCAATCTTAGAGCTAATTTCCTACTGTATCACTGCTTTACTAATTCTAAAGACTTGTATAATAGTTTTTAAATCCAAAAATTTCCATGAAAATATGAATATTCTATTCATCGGTCTAATTATTCAATGGTTCGAAGCATTCGTCTGTAAAGTTTTGGTTATGCCTTATCAAGTTGGCTTTTTACAAATTACCGAAAATTCTAGCAATGTTTATATCACTTGGTGGACAGCTGATACTCAAAATATGATTGATGTCCCTAATTTTTTCACCATTTTCCCTTTATTCCTTCCTGGTTTGCTAATCTGGCACTACGTATACTCAATGTTTATAGGAGTGACATGTGTGTCTATAGAACGGGTGTGTGCGACGTATTTTATCAGGTACAGTACTGGCCATAAAGAATGCGACAACTTGTTTTTTGACGATAACTTTTTGAAAACTCAACTTTTCAACTCGAATTTTTTACTGTAGACACATTGGAAAGTTACGAAAACTTGCGTACTTGGAAATTGCATCATCTTGCAAACAAAATTTTTTTTCAATTGTTTTCATTTTTTTTTCATTTTGCATATTTTTCATGATTTTTGGTTTTTTTAAATAAAGTTGAAAGACAACTAATTGGAATTAGTTTTAGTTATTGTTTTTCAGATATGGTTAGACCATTCGGGAAAAAATCCTTCTCTGTGGACGAGCGAAAAAGCATTGTGCGTGGTCATGAACTCGGCGCGCAT</canonical>
            <polymorphic>AGATCTTAGTTTTTGTTTCCTAATTCTTGTTATCTGAAATAAACGCTTTTTTGGTTCCTCTTCGATTTTTTTTGCAATCAGTTAGTTAATATAATTCTATAATCTGATTTTTCTAAAATATGATTTTCTGCTTTTTTGCTGTTTTTTACAATTCATATATATTTTTTTTCAGTTCTAAAATGATAATTTACGTCGAAAGCACCTCTAGCACTATCTGGCTCCCCTTATACAGTATAAATGGAAACGTGGACAATTTCTATATAGGCTTAGCAATCTTAGAGCTAATTTCCTACTGTATCACTGCTTTACTAATTCTAAAGACTTGTATAATAGTTTTTAAATCCAAAAATTTCCATGAAAATATGAATATTCTATTCATCGGTCTAATTATTCAATGGTTCGAAGCATTCGTCTGTAAAGTTTTGGTTATGCCTTATCAAGTTGGCTTTTTACAAATTACCGAAAATTCTAGCAATGTTTATATCACTTGGTGGACAGCYGATACTCAAAATATGATTGATGTCCCTAATTTTTTCACCATTTTCCCTTTATTCCTTCCTGGTTTGCTAATCTGGCACTACGTATACTCAATGTTTATAGGAGTGACATGTGTGTCTATAGAACGGGTGTGTGCGACGTATTTTATCAGGTACAGTACTGGCCATAAAGAATGCGACAACTTGTTTTTTGACGATAACTTTTTGAAAACTCAACTTTTCAACTCGAATTTTTTACTGTAGACACATTGGAAAGTTACGAAAACTTGCGTACTTGGAAATTGCATCATCTTGCAAACAAAATTTTTTTTCAATTGTTTTCATTTTTTTTTCATTTTGCATATTTTTCATGATTTTTGGTTTTTTTAAATAAAGTTGAAAGACAACTAATTGGAATTAGTTTTAGTTATTGTTTTTCAGATATGGTTAGACCATTCGGGAAAAAATCCTTCTCTGTGGACGAGCGAAAAAGCATTGTGCGTGGTCATGAACTCGGCGCGCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>502 281 217</canonical_bands>
                <polymorphic_bands>719 281</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>339 218 164 163 53 47 16</canonical_bands>
                <polymorphic_bands>339 218 216 164 47 16</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTATTCATCGGTCTAATTATTCA</pcr_primer_p1>
		<pcr_primer_p2>CATGTCACTCCTATAAACATTGA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TCTATTCATCGGTCTAATTATTCAATGGTTCGAAGCATTCGTCTGTAAAGTTTTGGTTATGCCTTATCAAGTTGGCTTTTTACAAATTACCGAAAATTCTAGCAATGTTTATATCACTTGGTGGACAGCTGATACTCAAAATATGATTGATGTCCCTAATTTTTTCACCATTTTCCCTTTATTCCTTCCTGGTTTGCTAATCTGGCACTACGTATACTCAATGTTTATAGGAGTGACATG</canonical_amplicon>
		<polymorphic_amplicon>TCTATTCATCGGTCTAATTATTCAATGGTTCGAAGCATTCGTCTGTAAAGTTTTGGTTATGCCTTATCAAGTTGGCTTTTTACAAATTACCGAAAATTCTAGCAATGTTTATATCACTTGGTGGACAGCYGATACTCAAAATATGATTGATGTCCCTAATTTTTTCACCATTTTCCCTTTATTCCTTCCTGGTTTGCTAATCTGGCACTACGTATACTCAATGTTTATAGGAGTGACATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37556</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>172148</contig_pos>
        <strand></strand>
        <context>AAATATGATT[G/C]ATGTCCCTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>CTAGCAATGTTTATATCACTTGGTGGACAGCTGATACTCAAAATATGATT</left_flank>
        <right_flank>ATGTCCCTAATTTTTTCACCATTTTCCCTTTATTCCTTCCTGGTTTGCTA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAATTCTTGTTATCTGAAATAAACGCTTTTTTGGTTCCTCTTCGATTTTTTTTGCAATCAGTTAGTTAATATAATTCTATAATCTGATTTTTCTAAAATATGATTTTCTGCTTTTTTGCTGTTTTTTACAATTCATATATATTTTTTTTCAGTTCTAAAATGATAATTTACGTCGAAAGCACCTCTAGCACTATCTGGCTCCCCTTATACAGTATAAATGGAAACGTGGACAATTTCTATATAGGCTTAGCAATCTTAGAGCTAATTTCCTACTGTATCACTGCTTTACTAATTCTAAAGACTTGTATAATAGTTTTTAAATCCAAAAATTTCCATGAAAATATGAATATTCTATTCATCGGTCTAATTATTCAATGGTTCGAAGCATTCGTCTGTAAAGTTTTGGTTATGCCTTATCAAGTTGGCTTTTTACAAATTACCGAAAATTCTAGCAATGTTTATATCACTTGGTGGACAGCTGATACTCAAAATATGATTGATGTCCCTAATTTTTTCACCATTTTCCCTTTATTCCTTCCTGGTTTGCTAATCTGGCACTACGTATACTCAATGTTTATAGGAGTGACATGTGTGTCTATAGAACGGGTGTGTGCGACGTATTTTATCAGGTACAGTACTGGCCATAAAGAATGCGACAACTTGTTTTTTGACGATAACTTTTTGAAAACTCAACTTTTCAACTCGAATTTTTTACTGTAGACACATTGGAAAGTTACGAAAACTTGCGTACTTGGAAATTGCATCATCTTGCAAACAAAATTTTTTTTCAATTGTTTTCATTTTTTTTTCATTTTGCATATTTTTCATGATTTTTGGTTTTTTTAAATAAAGTTGAAAGACAACTAATTGGAATTAGTTTTAGTTATTGTTTTTCAGATATGGTTAGACCATTCGGGAAAAAATCCTTCTCTGTGGACGAGCGAAAAAGCATTGTGCGTGGTCATGAACTCGGCGCGCATCCGAAGATACTTGCAACTC</canonical>
            <polymorphic>CTAATTCTTGTTATCTGAAATAAACGCTTTTTTGGTTCCTCTTCGATTTTTTTTGCAATCAGTTAGTTAATATAATTCTATAATCTGATTTTTCTAAAATATGATTTTCTGCTTTTTTGCTGTTTTTTACAATTCATATATATTTTTTTTCAGTTCTAAAATGATAATTTACGTCGAAAGCACCTCTAGCACTATCTGGCTCCCCTTATACAGTATAAATGGAAACGTGGACAATTTCTATATAGGCTTAGCAATCTTAGAGCTAATTTCCTACTGTATCACTGCTTTACTAATTCTAAAGACTTGTATAATAGTTTTTAAATCCAAAAATTTCCATGAAAATATGAATATTCTATTCATCGGTCTAATTATTCAATGGTTCGAAGCATTCGTCTGTAAAGTTTTGGTTATGCCTTATCAAGTTGGCTTTTTACAAATTACCGAAAATTCTAGCAATGTTTATATCACTTGGTGGACAGCTGATACTCAAAATATGATTSATGTCCCTAATTTTTTCACCATTTTCCCTTTATTCCTTCCTGGTTTGCTAATCTGGCACTACGTATACTCAATGTTTATAGGAGTGACATGTGTGTCTATAGAACGGGTGTGTGCGACGTATTTTATCAGGTACAGTACTGGCCATAAAGAATGCGACAACTTGTTTTTTGACGATAACTTTTTGAAAACTCAACTTTTCAACTCGAATTTTTTACTGTAGACACATTGGAAAGTTACGAAAACTTGCGTACTTGGAAATTGCATCATCTTGCAAACAAAATTTTTTTTCAATTGTTTTCATTTTTTTTTCATTTTGCATATTTTTCATGATTTTTGGTTTTTTTAAATAAAGTTGAAAGACAACTAATTGGAATTAGTTTTAGTTATTGTTTTTCAGATATGGTTAGACCATTCGGGAAAAAATCCTTCTCTGTGGACGAGCGAAAAAGCATTGTGCGTGGTCATGAACTCGGCGCGCATCCGAAGATACTTGCAACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATTCATCGGTCTAATTATTCA</pcr_primer_p1>
		<pcr_primer_p2>CATGTCACTCCTATAAACATTGA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TCTATTCATCGGTCTAATTATTCAATGGTTCGAAGCATTCGTCTGTAAAGTTTTGGTTATGCCTTATCAAGTTGGCTTTTTACAAATTACCGAAAATTCTAGCAATGTTTATATCACTTGGTGGACAGCTGATACTCAAAATATGATTGATGTCCCTAATTTTTTCACCATTTTCCCTTTATTCCTTCCTGGTTTGCTAATCTGGCACTACGTATACTCAATGTTTATAGGAGTGACATG</canonical_amplicon>
		<polymorphic_amplicon>TCTATTCATCGGTCTAATTATTCAATGGTTCGAAGCATTCGTCTGTAAAGTTTTGGTTATGCCTTATCAAGTTGGCTTTTTACAAATTACCGAAAATTCTAGCAATGTTTATATCACTTGGTGGACAGCTGATACTCAAAATATGATTSATGTCCCTAATTTTTTCACCATTTTCCCTTTATTCCTTCCTGGTTTGCTAATCTGGCACTACGTATACTCAATGTTTATAGGAGTGACATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37558</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>260153</contig_pos>
        <strand>+</strand>
        <context>GATTTCTAGG[C/G]CAttggtggc</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTCTGACATCTAGCCAATGAAATTGTGGCCTAGGTTCCCGGATTTCTAGG</left_flank>
        <right_flank>CATTGGTGGCCTAGAAATCCAAAATTTTAGAAAAAGTAAGCCATTTATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATTTCGTTGTCTCCTTGACTAAAAAACCTTTATTATTCTGGTATGCCGTTGGCCGTGGCCGAAGGTCCCACAACGGCAACTAACGTAACCTGAGAATATTCGTATTTCTCAATTTTTTCGCTATTTCTCTGGTCTAATTTCAGTGCGCGTTGCTGCCGAAAATTCAAGAGTGTGCGGAGTTTAAGCCCGGTAGTGAAGTCCTTAAAGGAGCATGTATTTACGTTGGTGGCCTAGAAATCCAAATTTTCTAAAAAGTTAGGCCACCATTCATTTTATCAATCGGAAGCGCTTGTTTTTAGTAACACCAGTTGTTGGATTCCAAAAACCTTCGATTCACAGCCGTTTGAATCGATGGCCTAGTTTTGGATTTCTAGGCCATCAATCTTCAAATTGATGTAACTCCCTACAAAATGAACGTTTTTGAAACCTAAAGACTGTGCAGGAATTCTCTGACATCTAGCCAATGAAATTGTGGCCTAGGTTCCCGGATTTCTAGGGCATTGGTGGCCTAGAAATCCAAAATTTTAGAAAAAGTAAGCCATTTATTTCAAGCGGTTATTTCAAGATATTCAAAAATCGAGATTTTTAGGTCACTGTAGTTGTATGATCTTCAACCACGGCTACCACATTCCCTTCCACAGCCCTATATTTCTGTACCACAAAAATATAATCTTTACTCACGTTCGTCTGAAAACGTATTCCAAATAGGAAGCCTTGTATCTAGTCTGATACTCTGCTAGATACTTTGAATCAGCCACTGGCAAGTAGTCCTCCGGAAACAAATCACTCAAATTGTTCACTAATTCGTCGAGAGTCTCGGGAAGTTCCACTCCGTACATTTGCTTGTATAAAAATGCCAAATCGATGAGACCATTGTGAAGACAAAGTGTGCTTGAAGAGCCTAGCAACTCATGGAATAGCGTTTTCAGTGGACAATTGGTTCCCTGGAATTAGTGTACTGTGTCGATTATGCATATGCGATGAAAGTCGACTGAATC</canonical>
            <polymorphic>CGATTTCGTTGTCTCCTTGACTAAAAAACCTTTATTATTCTGGTATGCCGTTGGCCGTGGCCGAAGGTCCCACAACGGCAACTAACGTAACCTGAGAATATTCGTATTTCTCAATTTTTTCGCTATTTCTCTGGTCTAATTTCAGTGCGCGTTGCTGCCGAAAATTCAAGAGTGTGCGGAGTTTAAGCCCGGTAGTGAAGTCCTTAAAGGAGCATGTATTTACGTTGGTGGCCTAGAAATCCAAATTTTCTAAAAAGTTAGGCCACCATTCATTTTATCAATCGGAAGCGCTTGTTTTTAGTAACACCAGTTGTTGGATTCCAAAAACCTTCGATTCACAGCCGTTTGAATCGATGGCCTAGTTTTGGATTTCTAGGCCATCAATCTTCAAATTGATGTAACTCCCTACAAAATGAACGTTTTTGAAACCTAAAGACTGTGCAGGAATTCTCTGACATCTAGCCAATGAAATTGTGGCCTAGGTTCCCGGATTTCTAGGSCATTGGTGGCCTAGAAATCCAAAATTTTAGAAAAAGTAAGCCATTTATTTCAAGCGGTTATTTCAAGATATTCAAAAATCGAGATTTTTAGGTCACTGTAGTTGTATGATCTTCAACCACGGCTACCACATTCCCTTCCACAGCCCTATATTTCTGTACCACAAAAATATAATCTTTACTCACGTTCGTCTGAAAACGTATTCCAAATAGGAAGCCTTGTATCTAGTCTGATACTCTGCTAGATACTTTGAATCAGCCACTGGCAAGTAGTCCTCCGGAAACAAATCACTCAAATTGTTCACTAATTCGTCGAGAGTCTCGGGAAGTTCCACTCCGTACATTTGCTTGTATAAAAATGCCAAATCGATGAGACCATTGTGAAGACAAAGTGTGCTTGAAGAGCCTAGCAACTCATGGAATAGCGTTTTCAGTGGACAATTGGTTCCCTGGAATTAGTGTACTGTGTCGATTATGCATATGCGATGAAAGTCGACTGAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>506 393 101</canonical_bands>
                <polymorphic_bands>899 101</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTTGTCTCCTTGACTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAAATAACCGCTTGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>560</pcr_amplicon_size>
		<canonical_amplicon>CGTTGTCTCCTTGACTAAAAAACCTTTATTATTCTGGTATGCCGTTGGCCGTGGCCGAAGGTCCCACAACGGCAACTAACGTAACCTGAGAATATTCGTATTTCTCAATTTTTTCGCTATTTCTCTGGTCTAATTTCAGTGCGCGTTGCTGCCGAAAATTCAAGAGTGTGCGGAGTTTAAGCCCGGTAGTGAAGTCCTTAAAGGAGCATGTATTTACGTTGGTGGCCTAGAAATCCAAATTTTCTAAAAAGTTAGGCCACCATTCATTTTATCAATCGGAAGCGCTTGTTTTTAGTAACACCAGTTGTTGGATTCCAAAAACCTTCGATTCACAGCCGTTTGAATCGATGGCCTAGTTTTGGATTTCTAGGCCATCAATCTTCAAATTGATGTAACTCCCTACAAAATGAACGTTTTTGAAACCTAAAGACTGTGCAGGAATTCTCTGACATCTAGCCAATGAAATTGTGGCCTAGGTTCCCGGATTTCTAGGGCATTGGTGGCCTAGAAATCCAAAATTTTAGAAAAAGTAAGCCATTTATTTCAAGCGGTTATTTCAA</canonical_amplicon>
		<polymorphic_amplicon>CGTTGTCTCCTTGACTAAAAAACCTTTATTATTCTGGTATGCCGTTGGCCGTGGCCGAAGGTCCCACAACGGCAACTAACGTAACCTGAGAATATTCGTATTTCTCAATTTTTTCGCTATTTCTCTGGTCTAATTTCAGTGCGCGTTGCTGCCGAAAATTCAAGAGTGTGCGGAGTTTAAGCCCGGTAGTGAAGTCCTTAAAGGAGCATGTATTTACGTTGGTGGCCTAGAAATCCAAATTTTCTAAAAAGTTAGGCCACCATTCATTTTATCAATCGGAAGCGCTTGTTTTTAGTAACACCAGTTGTTGGATTCCAAAAACCTTCGATTCACAGCCGTTTGAATCGATGGCCTAGTTTTGGATTTCTAGGCCATCAATCTTCAAATTGATGTAACTCCCTACAAAATGAACGTTTTTGAAACCTAAAGACTGTGCAGGAATTCTCTGACATCTAGCCAATGAAATTGTGGCCTAGGTTCCCGGATTTCTAGGSCATTGGTGGCCTAGAAATCCAAAATTTTAGAAAAAGTAAGCCATTTATTTCAAGCGGTTATTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37559</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>260167</contig_pos>
        <strand>+</strand>
        <context>tggtggccta[A/G]aaatccaaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATGAAATTGTGGCCTAGGTTCCCGGATTTCTAGGGCATTGGTGGCCTA</left_flank>
        <right_flank>AAATCCAAAATTTTAGAAAAAGTAAGCCATTTATTTCAAGCGGTTATTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTGACTAAAAAACCTTTATTATTCTGGTATGCCGTTGGCCGTGGCCGAAGGTCCCACAACGGCAACTAACGTAACCTGAGAATATTCGTATTTCTCAATTTTTTCGCTATTTCTCTGGTCTAATTTCAGTGCGCGTTGCTGCCGAAAATTCAAGAGTGTGCGGAGTTTAAGCCCGGTAGTGAAGTCCTTAAAGGAGCATGTATTTACGTTGGTGGCCTAGAAATCCAAATTTTCTAAAAAGTTAGGCCACCATTCATTTTATCAATCGGAAGCGCTTGTTTTTAGTAACACCAGTTGTTGGATTCCAAAAACCTTCGATTCACAGCCGTTTGAATCGATGGCCTAGTTTTGGATTTCTAGGCCATCAATCTTCAAATTGATGTAACTCCCTACAAAATGAACGTTTTTGAAACCTAAAGACTGTGCAGGAATTCTCTGACATCTAGCCAATGAAATTGTGGCCTAGGTTCCCGGATTTCTAGGGCATTGGTGGCCTAGAAATCCAAAATTTTAGAAAAAGTAAGCCATTTATTTCAAGCGGTTATTTCAAGATATTCAAAAATCGAGATTTTTAGGTCACTGTAGTTGTATGATCTTCAACCACGGCTACCACATTCCCTTCCACAGCCCTATATTTCTGTACCACAAAAATATAATCTTTACTCACGTTCGTCTGAAAACGTATTCCAAATAGGAAGCCTTGTATCTAGTCTGATACTCTGCTAGATACTTTGAATCAGCCACTGGCAAGTAGTCCTCCGGAAACAAATCACTCAAATTGTTCACTAATTCGTCGAGAGTCTCGGGAAGTTCCACTCCGTACATTTGCTTGTATAAAAATGCCAAATCGATGAGACCATTGTGAAGACAAAGTGTGCTTGAAGAGCCTAGCAACTCATGGAATAGCGTTTTCAGTGGACAATTGGTTCCCTGGAATTAGTGTACTGTGTCGATTATGCATATGCGATGAAAGTCGACTGAATCTCGATTAAAATCGA</canonical>
            <polymorphic>CCTTGACTAAAAAACCTTTATTATTCTGGTATGCCGTTGGCCGTGGCCGAAGGTCCCACAACGGCAACTAACGTAACCTGAGAATATTCGTATTTCTCAATTTTTTCGCTATTTCTCTGGTCTAATTTCAGTGCGCGTTGCTGCCGAAAATTCAAGAGTGTGCGGAGTTTAAGCCCGGTAGTGAAGTCCTTAAAGGAGCATGTATTTACGTTGGTGGCCTAGAAATCCAAATTTTCTAAAAAGTTAGGCCACCATTCATTTTATCAATCGGAAGCGCTTGTTTTTAGTAACACCAGTTGTTGGATTCCAAAAACCTTCGATTCACAGCCGTTTGAATCGATGGCCTAGTTTTGGATTTCTAGGCCATCAATCTTCAAATTGATGTAACTCCCTACAAAATGAACGTTTTTGAAACCTAAAGACTGTGCAGGAATTCTCTGACATCTAGCCAATGAAATTGTGGCCTAGGTTCCCGGATTTCTAGGGCATTGGTGGCCTARAAATCCAAAATTTTAGAAAAAGTAAGCCATTTATTTCAAGCGGTTATTTCAAGATATTCAAAAATCGAGATTTTTAGGTCACTGTAGTTGTATGATCTTCAACCACGGCTACCACATTCCCTTCCACAGCCCTATATTTCTGTACCACAAAAATATAATCTTTACTCACGTTCGTCTGAAAACGTATTCCAAATAGGAAGCCTTGTATCTAGTCTGATACTCTGCTAGATACTTTGAATCAGCCACTGGCAAGTAGTCCTCCGGAAACAAATCACTCAAATTGTTCACTAATTCGTCGAGAGTCTCGGGAAGTTCCACTCCGTACATTTGCTTGTATAAAAATGCCAAATCGATGAGACCATTGTGAAGACAAAGTGTGCTTGAAGAGCCTAGCAACTCATGGAATAGCGTTTTCAGTGGACAATTGGTTCCCTGGAATTAGTGTACTGTGTCGATTATGCATATGCGATGAAAGTCGACTGAATCTCGATTAAAATCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>219 212 165 126 110 86 20 16 16 16 14</canonical_bands>
                <polymorphic_bands>228 219 165 126 110 86 20 16 16 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTTGTCTCCTTGACTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTGAAATAACCGCTTGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>560</pcr_amplicon_size>
		<canonical_amplicon>AGAAATCCAAAATTTTAGAAAAAGTAAGCCATTTATTTCAAGCGGTTATTTCAA</canonical_amplicon>
		<polymorphic_amplicon>ARAAATCCAAAATTTTAGAAAAAGTAAGCCATTTATTTCAAGCGGTTATTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37560</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>260227</contig_pos>
        <strand></strand>
        <context>CAAGATATTC[A/G]AAAATCGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTAGAAAAAGTAAGCCATTTATTTCAAGCGGTTATTTCAAGATATTC</left_flank>
        <right_flank>AAAATCGAGATTTTTAGGTCACTGTAGTTGTATGATCTTCAACCACGGCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGGCAACTAACGTAACCTGAGAATATTCGTATTTCTCAATTTTTTCGCTATTTCTCTGGTCTAATTTCAGTGCGCGTTGCTGCCGAAAATTCAAGAGTGTGCGGAGTTTAAGCCCGGTAGTGAAGTCCTTAAAGGAGCATGTATTTACGTTGGTGGCCTAGAAATCCAAATTTTCTAAAAAGTTAGGCCACCATTCATTTTATCAATCGGAAGCGCTTGTTTTTAGTAACACCAGTTGTTGGATTCCAAAAACCTTCGATTCACAGCCGTTTGAATCGATGGCCTAGTTTTGGATTTCTAGGCCATCAATCTTCAAATTGATGTAACTCCCTACAAAATGAACGTTTTTGAAACCTAAAGACTGTGCAGGAATTCTCTGACATCTAGCCAATGAAATTGTGGCCTAGGTTCCCGGATTTCTAGGGCATTGGTGGCCTAGAAATCCAAAATTTTAGAAAAAGTAAGCCATTTATTTCAAGCGGTTATTTCAAGATATTCAAAAATCGAGATTTTTAGGTCACTGTAGTTGTATGATCTTCAACCACGGCTACCACATTCCCTTCCACAGCCCTATATTTCTGTACCACAAAAATATAATCTTTACTCACGTTCGTCTGAAAACGTATTCCAAATAGGAAGCCTTGTATCTAGTCTGATACTCTGCTAGATACTTTGAATCAGCCACTGGCAAGTAGTCCTCCGGAAACAAATCACTCAAATTGTTCACTAATTCGTCGAGAGTCTCGGGAAGTTCCACTCCGTACATTTGCTTGTATAAAAATGCCAAATCGATGAGACCATTGTGAAGACAAAGTGTGCTTGAAGAGCCTAGCAACTCATGGAATAGCGTTTTCAGTGGACAATTGGTTCCCTGGAATTAGTGTACTGTGTCGATTATGCATATGCGATGAAAGTCGACTGAATCTCGATTAAAATCGACTTTTATCGATTTCGAATCGACTTGAATGTCCGCTAGGATTATTTGAAATGGTGGCCGAT</canonical>
            <polymorphic>ACGGCAACTAACGTAACCTGAGAATATTCGTATTTCTCAATTTTTTCGCTATTTCTCTGGTCTAATTTCAGTGCGCGTTGCTGCCGAAAATTCAAGAGTGTGCGGAGTTTAAGCCCGGTAGTGAAGTCCTTAAAGGAGCATGTATTTACGTTGGTGGCCTAGAAATCCAAATTTTCTAAAAAGTTAGGCCACCATTCATTTTATCAATCGGAAGCGCTTGTTTTTAGTAACACCAGTTGTTGGATTCCAAAAACCTTCGATTCACAGCCGTTTGAATCGATGGCCTAGTTTTGGATTTCTAGGCCATCAATCTTCAAATTGATGTAACTCCCTACAAAATGAACGTTTTTGAAACCTAAAGACTGTGCAGGAATTCTCTGACATCTAGCCAATGAAATTGTGGCCTAGGTTCCCGGATTTCTAGGGCATTGGTGGCCTAGAAATCCAAAATTTTAGAAAAAGTAAGCCATTTATTTCAAGCGGTTATTTCAAGATATTCRAAAATCGAGATTTTTAGGTCACTGTAGTTGTATGATCTTCAACCACGGCTACCACATTCCCTTCCACAGCCCTATATTTCTGTACCACAAAAATATAATCTTTACTCACGTTCGTCTGAAAACGTATTCCAAATAGGAAGCCTTGTATCTAGTCTGATACTCTGCTAGATACTTTGAATCAGCCACTGGCAAGTAGTCCTCCGGAAACAAATCACTCAAATTGTTCACTAATTCGTCGAGAGTCTCGGGAAGTTCCACTCCGTACATTTGCTTGTATAAAAATGCCAAATCGATGAGACCATTGTGAAGACAAAGTGTGCTTGAAGAGCCTAGCAACTCATGGAATAGCGTTTTCAGTGGACAATTGGTTCCCTGGAATTAGTGTACTGTGTCGATTATGCATATGCGATGAAAGTCGACTGAATCTCGATTAAAATCGACTTTTATCGATTTCGAATCGACTTGAATGTCCGCTAGGATTATTTGAAATGGTGGCCGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTGTCTCCTTGACTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAGACGAACGTGAGTAAAGATT</pcr_primer_p2>
		<pcr_amplicon_size>686</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATCGAGATTTTTAGGTCACTGTAGTTGTATGATCTTCAACCACGGCTACCACATTCCCTTCCACAGCCCTATATTTCTGTACCACAAAAATATAATCTTTACTCACGTTCGTCTG</canonical_amplicon>
		<polymorphic_amplicon>CRAAAATCGAGATTTTTAGGTCACTGTAGTTGTATGATCTTCAACCACGGCTACCACATTCCCTTCCACAGCCCTATATTTCTGTACCACAAAAATATAATCTTTACTCACGTTCGTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37561</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>260247</contig_pos>
        <strand></strand>
        <context>Atttttaggt[C/T]actgtagttg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTATTTCAAGCGGTTATTTCAAGATATTCAAAAATCGAGATTTTTAGGT</left_flank>
        <right_flank>ACTGTAGTTGTATGATCTTCAACCACGGCTACCACATTCCCTTCCACAGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAATATTCGTATTTCTCAATTTTTTCGCTATTTCTCTGGTCTAATTTCAGTGCGCGTTGCTGCCGAAAATTCAAGAGTGTGCGGAGTTTAAGCCCGGTAGTGAAGTCCTTAAAGGAGCATGTATTTACGTTGGTGGCCTAGAAATCCAAATTTTCTAAAAAGTTAGGCCACCATTCATTTTATCAATCGGAAGCGCTTGTTTTTAGTAACACCAGTTGTTGGATTCCAAAAACCTTCGATTCACAGCCGTTTGAATCGATGGCCTAGTTTTGGATTTCTAGGCCATCAATCTTCAAATTGATGTAACTCCCTACAAAATGAACGTTTTTGAAACCTAAAGACTGTGCAGGAATTCTCTGACATCTAGCCAATGAAATTGTGGCCTAGGTTCCCGGATTTCTAGGGCATTGGTGGCCTAGAAATCCAAAATTTTAGAAAAAGTAAGCCATTTATTTCAAGCGGTTATTTCAAGATATTCAAAAATCGAGATTTTTAGGTCACTGTAGTTGTATGATCTTCAACCACGGCTACCACATTCCCTTCCACAGCCCTATATTTCTGTACCACAAAAATATAATCTTTACTCACGTTCGTCTGAAAACGTATTCCAAATAGGAAGCCTTGTATCTAGTCTGATACTCTGCTAGATACTTTGAATCAGCCACTGGCAAGTAGTCCTCCGGAAACAAATCACTCAAATTGTTCACTAATTCGTCGAGAGTCTCGGGAAGTTCCACTCCGTACATTTGCTTGTATAAAAATGCCAAATCGATGAGACCATTGTGAAGACAAAGTGTGCTTGAAGAGCCTAGCAACTCATGGAATAGCGTTTTCAGTGGACAATTGGTTCCCTGGAATTAGTGTACTGTGTCGATTATGCATATGCGATGAAAGTCGACTGAATCTCGATTAAAATCGACTTTTATCGATTTCGAATCGACTTGAATGTCCGCTAGGATTATTTGAAATGGTGGCCGATTTTTTTGGAAGTTGAGTTTT</canonical>
            <polymorphic>AGAATATTCGTATTTCTCAATTTTTTCGCTATTTCTCTGGTCTAATTTCAGTGCGCGTTGCTGCCGAAAATTCAAGAGTGTGCGGAGTTTAAGCCCGGTAGTGAAGTCCTTAAAGGAGCATGTATTTACGTTGGTGGCCTAGAAATCCAAATTTTCTAAAAAGTTAGGCCACCATTCATTTTATCAATCGGAAGCGCTTGTTTTTAGTAACACCAGTTGTTGGATTCCAAAAACCTTCGATTCACAGCCGTTTGAATCGATGGCCTAGTTTTGGATTTCTAGGCCATCAATCTTCAAATTGATGTAACTCCCTACAAAATGAACGTTTTTGAAACCTAAAGACTGTGCAGGAATTCTCTGACATCTAGCCAATGAAATTGTGGCCTAGGTTCCCGGATTTCTAGGGCATTGGTGGCCTAGAAATCCAAAATTTTAGAAAAAGTAAGCCATTTATTTCAAGCGGTTATTTCAAGATATTCAAAAATCGAGATTTTTAGGTYACTGTAGTTGTATGATCTTCAACCACGGCTACCACATTCCCTTCCACAGCCCTATATTTCTGTACCACAAAAATATAATCTTTACTCACGTTCGTCTGAAAACGTATTCCAAATAGGAAGCCTTGTATCTAGTCTGATACTCTGCTAGATACTTTGAATCAGCCACTGGCAAGTAGTCCTCCGGAAACAAATCACTCAAATTGTTCACTAATTCGTCGAGAGTCTCGGGAAGTTCCACTCCGTACATTTGCTTGTATAAAAATGCCAAATCGATGAGACCATTGTGAAGACAAAGTGTGCTTGAAGAGCCTAGCAACTCATGGAATAGCGTTTTCAGTGGACAATTGGTTCCCTGGAATTAGTGTACTGTGTCGATTATGCATATGCGATGAAAGTCGACTGAATCTCGATTAAAATCGACTTTTATCGATTTCGAATCGACTTGAATGTCCGCTAGGATTATTTGAAATGGTGGCCGATTTTTTTGGAAGTTGAGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>103 103 87 77 53 49 41 40 35 35 33 32 32 30 29 27 26 25 24 21 21 21 13 12 11 9 7 2 2</canonical_bands>
                <polymorphic_bands>111 103 103 77 53 49 41 40 35 35 33 32 32 30 29 27 26 25 21 21 21 13 12 11 9 7 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTTGTCTCCTTGACTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAGACGAACGTGAGTAAAGATT</pcr_primer_p2>
		<pcr_amplicon_size>686</pcr_amplicon_size>
		<canonical_amplicon>TCACTGTAGTTGTATGATCTTCAACCACGGCTACCACATTCCCTTCCACAGCCCTATATTTCTGTACCACAAAAATATAATCTTTACTCACGTTCGTCTG</canonical_amplicon>
		<polymorphic_amplicon>TYACTGTAGTTGTATGATCTTCAACCACGGCTACCACATTCCCTTCCACAGCCCTATATTTCTGTACCACAAAAATATAATCTTTACTCACGTTCGTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37562</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>260708</contig_pos>
        <strand></strand>
        <context>CCGCTAGGAT[T/C]Atttgaaatg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTAAAATCGACTTTTATCGATTTCGAATCGACTTGAATGTCCGCTAGGAT</left_flank>
        <right_flank>ATTTGAAATGGTGGCCGATTTTTTTGGAAGTTGAGTTTTCTAGGCTACCA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTATTTCAAGATATTCAAAAATCGAGATTTTTAGGTCACTGTAGTTGTATGATCTTCAACCACGGCTACCACATTCCCTTCCACAGCCCTATATTTCTGTACCACAAAAATATAATCTTTACTCACGTTCGTCTGAAAACGTATTCCAAATAGGAAGCCTTGTATCTAGTCTGATACTCTGCTAGATACTTTGAATCAGCCACTGGCAAGTAGTCCTCCGGAAACAAATCACTCAAATTGTTCACTAATTCGTCGAGAGTCTCGGGAAGTTCCACTCCGTACATTTGCTTGTATAAAAATGCCAAATCGATGAGACCATTGTGAAGACAAAGTGTGCTTGAAGAGCCTAGCAACTCATGGAATAGCGTTTTCAGTGGACAATTGGTTCCCTGGAATTAGTGTACTGTGTCGATTATGCATATGCGATGAAAGTCGACTGAATCTCGATTAAAATCGACTTTTATCGATTTCGAATCGACTTGAATGTCCGCTAGGATTATTTGAAATGGTGGCCGATTTTTTTGGAAGTTGAGTTTTCTAGGCTACCATGTCAAAACGGTCCAGAAACGGCCTGCTATTCATCTGGTGCGTTTTCTAGACCATTTCGACATGGTGGCCTAACTTTTGCAAGTTGAGTTTTCTAGGCCATTATGATAAAATGTTCTAGAAATGGTCTGATATTTACCTGGTGATTTTTCTAGACCATTTTGACATGGTGGCCGAACTTTTGCTAGTTGATTTTTCTAGGCCACCATGTCAAAATGTTCTAGAAATGGCCTGATATTCACCTGGTGTGTTTTCTACGACACTTTGACATGATGGCCTAACTTTTGCAAGTTGAGTTTTCTAGGCCACCACGAGTTTTACTGAAATCAACAAGGAGAAGTTCGACTTTCGATTCAACTCGGCACTCTACCTGGAATTGAACACCAGATTGAATGAGACGATTGAAATCGAAAGAGTGTTTTGCAAGAAATTGAAGAGCAGATGGTTCAATT</canonical>
            <polymorphic>GGTTATTTCAAGATATTCAAAAATCGAGATTTTTAGGTCACTGTAGTTGTATGATCTTCAACCACGGCTACCACATTCCCTTCCACAGCCCTATATTTCTGTACCACAAAAATATAATCTTTACTCACGTTCGTCTGAAAACGTATTCCAAATAGGAAGCCTTGTATCTAGTCTGATACTCTGCTAGATACTTTGAATCAGCCACTGGCAAGTAGTCCTCCGGAAACAAATCACTCAAATTGTTCACTAATTCGTCGAGAGTCTCGGGAAGTTCCACTCCGTACATTTGCTTGTATAAAAATGCCAAATCGATGAGACCATTGTGAAGACAAAGTGTGCTTGAAGAGCCTAGCAACTCATGGAATAGCGTTTTCAGTGGACAATTGGTTCCCTGGAATTAGTGTACTGTGTCGATTATGCATATGCGATGAAAGTCGACTGAATCTCGATTAAAATCGACTTTTATCGATTTCGAATCGACTTGAATGTCCGCTAGGATYATTTGAAATGGTGGCCGATTTTTTTGGAAGTTGAGTTTTCTAGGCTACCATGTCAAAACGGTCCAGAAACGGCCTGCTATTCATCTGGTGCGTTTTCTAGACCATTTCGACATGGTGGCCTAACTTTTGCAAGTTGAGTTTTCTAGGCCATTATGATAAAATGTTCTAGAAATGGTCTGATATTTACCTGGTGATTTTTCTAGACCATTTTGACATGGTGGCCGAACTTTTGCTAGTTGATTTTTCTAGGCCACCATGTCAAAATGTTCTAGAAATGGCCTGATATTCACCTGGTGTGTTTTCTACGACACTTTGACATGATGGCCTAACTTTTGCAAGTTGAGTTTTCTAGGCCACCACGAGTTTTACTGAAATCAACAAGGAGAAGTTCGACTTTCGATTCAACTCGGCACTCTACCTGGAATTGAACACCAGATTGAATGAGACGATTGAAATCGAAAGAGTGTTTTGCAAGAAATTGAAGAGCAGATGGTTCAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCCCTGGAATTAGTGTACTG</pcr_primer_p1>
		<pcr_primer_p2>AACTTCTCCTTGTTGATTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>504</pcr_amplicon_size>
		<canonical_amplicon>GTTCCCTGGAATTAGTGTACTGTGTCGATTATGCATATGCGATGAAAGTCGACTGAATCTCGATTAAAATCGACTTTTATCGATTTCGAATCGACTTGAATGTCCGCTAGGATTATTTGAAATGGTGGCCGATTTTTTTGGAAGTTGAGTTTTCTAGGCTACCATGTCAAAACGGTCCAGAAACGGCCTGCTATTCATCTGGTGCGTTTTCTAGACCATTTCGACATGGTGGCCTAACTTTTGCAAGTTGAGTTTTCTAGGCCATTATGATAAAATGTTCTAGAAATGGTCTGATATTTACCTGGTGATTTTTCTAGACCATTTTGACATGGTGGCCGAACTTTTGCTAGTTGATTTTTCTAGGCCACCATGTCAAAATGTTCTAGAAATGGCCTGATATTCACCTGGTGTGTTTTCTACGACACTTTGACATGATGGCCTAACTTTTGCAAGTTGAGTTTTCTAGGCCACCACGAGTTTTACTGAAATCAACAAGGAGAAGTT</canonical_amplicon>
		<polymorphic_amplicon>GTTCCCTGGAATTAGTGTACTGTGTCGATTATGCATATGCGATGAAAGTCGACTGAATCTCGATTAAAATCGACTTTTATCGATTTCGAATCGACTTGAATGTCCGCTAGGATYATTTGAAATGGTGGCCGATTTTTTTGGAAGTTGAGTTTTCTAGGCTACCATGTCAAAACGGTCCAGAAACGGCCTGCTATTCATCTGGTGCGTTTTCTAGACCATTTCGACATGGTGGCCTAACTTTTGCAAGTTGAGTTTTCTAGGCCATTATGATAAAATGTTCTAGAAATGGTCTGATATTTACCTGGTGATTTTTCTAGACCATTTTGACATGGTGGCCGAACTTTTGCTAGTTGATTTTTCTAGGCCACCATGTCAAAATGTTCTAGAAATGGCCTGATATTCACCTGGTGTGTTTTCTACGACACTTTGACATGATGGCCTAACTTTTGCAAGTTGAGTTTTCTAGGCCACCACGAGTTTTACTGAAATCAACAAGGAGAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37563</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>260799</contig_pos>
        <strand></strand>
        <context>tcatctggtg[C/T]gttttctaga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGGCTACCATGTCAAAACGGTCCAGAAACGGCCTGCTATTCATCTGGTG</left_flank>
        <right_flank>GTTTTCTAGACCATTTCGACATGGTGGCCTAACTTTTGCAAGTTGAGTTT</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATATTTCTGTACCACAAAAATATAATCTTTACTCACGTTCGTCTGAAAACGTATTCCAAATAGGAAGCCTTGTATCTAGTCTGATACTCTGCTAGATACTTTGAATCAGCCACTGGCAAGTAGTCCTCCGGAAACAAATCACTCAAATTGTTCACTAATTCGTCGAGAGTCTCGGGAAGTTCCACTCCGTACATTTGCTTGTATAAAAATGCCAAATCGATGAGACCATTGTGAAGACAAAGTGTGCTTGAAGAGCCTAGCAACTCATGGAATAGCGTTTTCAGTGGACAATTGGTTCCCTGGAATTAGTGTACTGTGTCGATTATGCATATGCGATGAAAGTCGACTGAATCTCGATTAAAATCGACTTTTATCGATTTCGAATCGACTTGAATGTCCGCTAGGATTATTTGAAATGGTGGCCGATTTTTTTGGAAGTTGAGTTTTCTAGGCTACCATGTCAAAACGGTCCAGAAACGGCCTGCTATTCATCTGGTGCGTTTTCTAGACCATTTCGACATGGTGGCCTAACTTTTGCAAGTTGAGTTTTCTAGGCCATTATGATAAAATGTTCTAGAAATGGTCTGATATTTACCTGGTGATTTTTCTAGACCATTTTGACATGGTGGCCGAACTTTTGCTAGTTGATTTTTCTAGGCCACCATGTCAAAATGTTCTAGAAATGGCCTGATATTCACCTGGTGTGTTTTCTACGACACTTTGACATGATGGCCTAACTTTTGCAAGTTGAGTTTTCTAGGCCACCACGAGTTTTACTGAAATCAACAAGGAGAAGTTCGACTTTCGATTCAACTCGGCACTCTACCTGGAATTGAACACCAGATTGAATGAGACGATTGAAATCGAAAGAGTGTTTTGCAAGAAATTGAAGAGCAGATGGTTCAATTGTGAATGGTTTTTCCGAGAGTGTCAACAGATTAAAAACTTGGGTCTCGTAGCGAAGAGCCCGTCTCTTTTCACTTTTATGAGTCAGTTTCA</canonical>
            <polymorphic>TATATTTCTGTACCACAAAAATATAATCTTTACTCACGTTCGTCTGAAAACGTATTCCAAATAGGAAGCCTTGTATCTAGTCTGATACTCTGCTAGATACTTTGAATCAGCCACTGGCAAGTAGTCCTCCGGAAACAAATCACTCAAATTGTTCACTAATTCGTCGAGAGTCTCGGGAAGTTCCACTCCGTACATTTGCTTGTATAAAAATGCCAAATCGATGAGACCATTGTGAAGACAAAGTGTGCTTGAAGAGCCTAGCAACTCATGGAATAGCGTTTTCAGTGGACAATTGGTTCCCTGGAATTAGTGTACTGTGTCGATTATGCATATGCGATGAAAGTCGACTGAATCTCGATTAAAATCGACTTTTATCGATTTCGAATCGACTTGAATGTCCGCTAGGATTATTTGAAATGGTGGCCGATTTTTTTGGAAGTTGAGTTTTCTAGGCTACCATGTCAAAACGGTCCAGAAACGGCCTGCTATTCATCTGGTGYGTTTTCTAGACCATTTCGACATGGTGGCCTAACTTTTGCAAGTTGAGTTTTCTAGGCCATTATGATAAAATGTTCTAGAAATGGTCTGATATTTACCTGGTGATTTTTCTAGACCATTTTGACATGGTGGCCGAACTTTTGCTAGTTGATTTTTCTAGGCCACCATGTCAAAATGTTCTAGAAATGGCCTGATATTCACCTGGTGTGTTTTCTACGACACTTTGACATGATGGCCTAACTTTTGCAAGTTGAGTTTTCTAGGCCACCACGAGTTTTACTGAAATCAACAAGGAGAAGTTCGACTTTCGATTCAACTCGGCACTCTACCTGGAATTGAACACCAGATTGAATGAGACGATTGAAATCGAAAGAGTGTTTTGCAAGAAATTGAAGAGCAGATGGTTCAATTGTGAATGGTTTTTCCGAGAGTGTCAACAGATTAAAAACTTGGGTCTCGTAGCGAAGAGCCCGTCTCTTTTCACTTTTATGAGTCAGTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCCCTGGAATTAGTGTACTG</pcr_primer_p1>
		<pcr_primer_p2>AACTTCTCCTTGTTGATTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>504</pcr_amplicon_size>
		<canonical_amplicon>GTTCCCTGGAATTAGTGTACTGTGTCGATTATGCATATGCGATGAAAGTCGACTGAATCTCGATTAAAATCGACTTTTATCGATTTCGAATCGACTTGAATGTCCGCTAGGATTATTTGAAATGGTGGCCGATTTTTTTGGAAGTTGAGTTTTCTAGGCTACCATGTCAAAACGGTCCAGAAACGGCCTGCTATTCATCTGGTGCGTTTTCTAGACCATTTCGACATGGTGGCCTAACTTTTGCAAGTTGAGTTTTCTAGGCCATTATGATAAAATGTTCTAGAAATGGTCTGATATTTACCTGGTGATTTTTCTAGACCATTTTGACATGGTGGCCGAACTTTTGCTAGTTGATTTTTCTAGGCCACCATGTCAAAATGTTCTAGAAATGGCCTGATATTCACCTGGTGTGTTTTCTACGACACTTTGACATGATGGCCTAACTTTTGCAAGTTGAGTTTTCTAGGCCACCACGAGTTTTACTGAAATCAACAAGGAGAAGTT</canonical_amplicon>
		<polymorphic_amplicon>GTTCCCTGGAATTAGTGTACTGTGTCGATTATGCATATGCGATGAAAGTCGACTGAATCTCGATTAAAATCGACTTTTATCGATTTCGAATCGACTTGAATGTCCGCTAGGATTATTTGAAATGGTGGCCGATTTTTTTGGAAGTTGAGTTTTCTAGGCTACCATGTCAAAACGGTCCAGAAACGGCCTGCTATTCATCTGGTGYGTTTTCTAGACCATTTCGACATGGTGGCCTAACTTTTGCAAGTTGAGTTTTCTAGGCCATTATGATAAAATGTTCTAGAAATGGTCTGATATTTACCTGGTGATTTTTCTAGACCATTTTGACATGGTGGCCGAACTTTTGCTAGTTGATTTTTCTAGGCCACCATGTCAAAATGTTCTAGAAATGGCCTGATATTCACCTGGTGTGTTTTCTACGACACTTTGACATGATGGCCTAACTTTTGCAAGTTGAGTTTTCTAGGCCACCACGAGTTTTACTGAAATCAACAAGGAGAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37564</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>264882</contig_pos>
        <strand></strand>
        <context>tttcaaagaa[A/G]ccgagataat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATCAGCGACATTTTATCTATTGAAAATCGTTCGATATCTTTCAAAGAA</left_flank>
        <right_flank>CCGAGATAATTGAGCTCAAAGCTGACGTATTGGGTAGGCTTCTATTAAAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAAAAATGGTCAACTGATAAAATATTGATGACATTATGATAAACAATTTATCAGTAACCAGATTCTTGATATCTTTCAAAGAAAAAGATGAAAATAGGCTCAAAGTTGAAAGTTGGGCCCTTCTATTACCAAAATAGCTCTCCACAAATTTTCAACAATTTAACACGGCGTTTTGCAAGCATTGTTTAGAAAAAGCAAATAAAACGGTGCCTTTTTAGTGCCAACTTGCAAAGAACATCGACTATGGCTCTAATGACATGGTTTAGCAGATCTTACGACATACATTTGAATTATATTTGATGAAAATGAAGATACTATTCAATCACGAATCACAGATACCGTACTTCCTTTAATAGGAGTCTACCCAAGTCGTTAAATTTGAGCTGAATTGTCTCCGTTCTTTTAAAAGATATCAAAAATTTATCAACTGATAAATTATTCATCATAATATCAGCGACATTTTATCTATTGAAAATCGTTCGATATCTTTCAAAGAAACCGAGATAATTGAGCTCAAAGCTGACGTATTGGGTAGGCTTCTATTAAAGCAAATACGGTAGTCAGAATTCCTCTAATAGAGGATGAGAGAGCTGTGAAATTGAAGGAAGTCCGGCTGACTAGCTAGCTCAACTAACATAACGACATCATTATCTACCGAGCTAGCTTATAAGAATTGAGTCGCCTGAGCTCTTTCGAGAAGTCCTATGAGCCGCCGGACAGCCGTCGGGGACAGTTAAGGTGGTCGACCATTCTTGTATTAAACTCTGATTTATACCTTATCAAGGACTAACTACTAGATGCATCTAGGAACTTAGAGCAGGGCCTCATATCTCATTTCTAGACTTATTCAGACCAGAATATCCATTTCCCGAATCTTCGAAAAAAAAATTGGAAACTGTTTTCCCATAAGTACCGTATTTCCTCTAATAGAGGCTAGCCAAGCCGTCTATGTTAAGCTCATTTATCTCGGCCCCTTCAAAAGATATCAAGAATGTGTC</canonical>
            <polymorphic>TCAAAAAATGGTCAACTGATAAAATATTGATGACATTATGATAAACAATTTATCAGTAACCAGATTCTTGATATCTTTCAAAGAAAAAGATGAAAATAGGCTCAAAGTTGAAAGTTGGGCCCTTCTATTACCAAAATAGCTCTCCACAAATTTTCAACAATTTAACACGGCGTTTTGCAAGCATTGTTTAGAAAAAGCAAATAAAACGGTGCCTTTTTAGTGCCAACTTGCAAAGAACATCGACTATGGCTCTAATGACATGGTTTAGCAGATCTTACGACATACATTTGAATTATATTTGATGAAAATGAAGATACTATTCAATCACGAATCACAGATACCGTACTTCCTTTAATAGGAGTCTACCCAAGTCGTTAAATTTGAGCTGAATTGTCTCCGTTCTTTTAAAAGATATCAAAAATTTATCAACTGATAAATTATTCATCATAATATCAGCGACATTTTATCTATTGAAAATCGTTCGATATCTTTCAAAGAARCCGAGATAATTGAGCTCAAAGCTGACGTATTGGGTAGGCTTCTATTAAAGCAAATACGGTAGTCAGAATTCCTCTAATAGAGGATGAGAGAGCTGTGAAATTGAAGGAAGTCCGGCTGACTAGCTAGCTCAACTAACATAACGACATCATTATCTACCGAGCTAGCTTATAAGAATTGAGTCGCCTGAGCTCTTTCGAGAAGTCCTATGAGCCGCCGGACAGCCGTCGGGGACAGTTAAGGTGGTCGACCATTCTTGTATTAAACTCTGATTTATACCTTATCAAGGACTAACTACTAGATGCATCTAGGAACTTAGAGCAGGGCCTCATATCTCATTTCTAGACTTATTCAGACCAGAATATCCATTTCCCGAATCTTCGAAAAAAAAATTGGAAACTGTTTTCCCATAAGTACCGTATTTCCTCTAATAGAGGCTAGCCAAGCCGTCTATGTTAAGCTCATTTATCTCGGCCCCTTCAAAAGATATCAAGAATGTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTCAATCACGAATCACAGAT</pcr_primer_p1>
		<pcr_primer_p2>GGAATTCTGACTACCGTATTTG</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>CTATTCAATCACGAATCACAGATACCGTACTTCCTTTAATAGGAGTCTACCCAAGTCGTTAAATTTGAGCTGAATTGTCTCCGTTCTTTTAAAAGATATCAAAAATTTATCAACTGATAAATTATTCATCATAATATCAGCGACATTTTATCTATTGAAAATCGTTCGATATCTTTCAAAGAAACCGAGATAATTGAGCTCAAAGCTGACGTATTGGGTAGGCTTCTATTAAAGCAAATACGGTAGTCAGAATTCC</canonical_amplicon>
		<polymorphic_amplicon>CTATTCAATCACGAATCACAGATACCGTACTTCCTTTAATAGGAGTCTACCCAAGTCGTTAAATTTGAGCTGAATTGTCTCCGTTCTTTTAAAAGATATCAAAAATTTATCAACTGATAAATTATTCATCATAATATCAGCGACATTTTATCTATTGAAAATCGTTCGATATCTTTCAAAGAARCCGAGATAATTGAGCTCAAAGCTGACGTATTGGGTAGGCTTCTATTAAAGCAAATACGGTAGTCAGAATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37565</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>264924</contig_pos>
        <strand>+</strand>
        <context>gggtaggctt[A/G]tattaaagCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAAAGAAACCGAGATAATTGAGCTCAAAGCTGACGTATTGGGTAGGCTT</left_flank>
        <right_flank>TATTAAAGCAAATACGGTAGTCAGAATTCCTCTAATAGAGGATGAGAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACAATTTATCAGTAACCAGATTCTTGATATCTTTCAAAGAAAAAGATGAAAATAGGCTCAAAGTTGAAAGTTGGGCCCTTCTATTACCAAAATAGCTCTCCACAAATTTTCAACAATTTAACACGGCGTTTTGCAAGCATTGTTTAGAAAAAGCAAATAAAACGGTGCCTTTTTAGTGCCAACTTGCAAAGAACATCGACTATGGCTCTAATGACATGGTTTAGCAGATCTTACGACATACATTTGAATTATATTTGATGAAAATGAAGATACTATTCAATCACGAATCACAGATACCGTACTTCCTTTAATAGGAGTCTACCCAAGTCGTTAAATTTGAGCTGAATTGTCTCCGTTCTTTTAAAAGATATCAAAAATTTATCAACTGATAAATTATTCATCATAATATCAGCGACATTTTATCTATTGAAAATCGTTCGATATCTTTCAAAGAAACCGAGATAATTGAGCTCAAAGCTGACGTATTGGGTAGGCTTCTATTAAAGCAAATACGGTAGTCAGAATTCCTCTAATAGAGGATGAGAGAGCTGTGAAATTGAAGGAAGTCCGGCTGACTAGCTAGCTCAACTAACATAACGACATCATTATCTACCGAGCTAGCTTATAAGAATTGAGTCGCCTGAGCTCTTTCGAGAAGTCCTATGAGCCGCCGGACAGCCGTCGGGGACAGTTAAGGTGGTCGACCATTCTTGTATTAAACTCTGATTTATACCTTATCAAGGACTAACTACTAGATGCATCTAGGAACTTAGAGCAGGGCCTCATATCTCATTTCTAGACTTATTCAGACCAGAATATCCATTTCCCGAATCTTCGAAAAAAAAATTGGAAACTGTTTTCCCATAAGTACCGTATTTCCTCTAATAGAGGCTAGCCAAGCCGTCTATGTTAAGCTCATTTATCTCGGCCCCTTCAAAAGATATCAAGAATGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACCATTTATCA</canonical>
            <polymorphic>AAACAATTTATCAGTAACCAGATTCTTGATATCTTTCAAAGAAAAAGATGAAAATAGGCTCAAAGTTGAAAGTTGGGCCCTTCTATTACCAAAATAGCTCTCCACAAATTTTCAACAATTTAACACGGCGTTTTGCAAGCATTGTTTAGAAAAAGCAAATAAAACGGTGCCTTTTTAGTGCCAACTTGCAAAGAACATCGACTATGGCTCTAATGACATGGTTTAGCAGATCTTACGACATACATTTGAATTATATTTGATGAAAATGAAGATACTATTCAATCACGAATCACAGATACCGTACTTCCTTTAATAGGAGTCTACCCAAGTCGTTAAATTTGAGCTGAATTGTCTCCGTTCTTTTAAAAGATATCAAAAATTTATCAACTGATAAATTATTCATCATAATATCAGCGACATTTTATCTATTGAAAATCGTTCGATATCTTTCAAAGAAACCGAGATAATTGAGCTCAAAGCTGACGTATTGGGTAGGCTTRTATTAAAGCAAATACGGTAGTCAGAATTCCTCTAATAGAGGATGAGAGAGCTGTGAAATTGAAGGAAGTCCGGCTGACTAGCTAGCTCAACTAACATAACGACATCATTATCTACCGAGCTAGCTTATAAGAATTGAGTCGCCTGAGCTCTTTCGAGAAGTCCTATGAGCCGCCGGACAGCCGTCGGGGACAGTTAAGGTGGTCGACCATTCTTGTATTAAACTCTGATTTATACCTTATCAAGGACTAACTACTAGATGCATCTAGGAACTTAGAGCAGGGCCTCATATCTCATTTCTAGACTTATTCAGACCAGAATATCCATTTCCCGAATCTTCGAAAAAAAAATTGGAAACTGTTTTCCCATAAGTACCGTATTTCCTCTAATAGAGGCTAGCCAAGCCGTCTATGTTAAGCTCATTTATCTCGGCCCCTTCAAAAGATATCAAGAATGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACCATTTATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTCAATCACGAATCACAGAT</pcr_primer_p1>
		<pcr_primer_p2>CAATTTCACAGCTCTCTCATC</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>CTATTCAATCACGAATCACAGATACCGTACTTCCTTTAATAGGAGTCTACCCAAGTCGTTAAATTTGAGCTGAATTGTCTCCGTTCTTTTAAAAGATATCAAAAATTTATCAACTGATAAATTATTCATCATAATATCAGCGACATTTTATCTATTGAAAATCGTTCGATATCTTTCAAAGAAACCGAGATAATTGAGCTCAAAGCTGACGTATTGGGTAGGCTTCTATTAAAGCAAATACGGTAGTCAGAATTCCTCTAATAGAGGATGAGAGAGCTGTGAAATTG</canonical_amplicon>
		<polymorphic_amplicon>CTATTCAATCACGAATCACAGATACCGTACTTCCTTTAATAGGAGTCTACCCAAGTCGTTAAATTTGAGCTGAATTGTCTCCGTTCTTTTAAAAGATATCAAAAATTTATCAACTGATAAATTATTCATCATAATATCAGCGACATTTTATCTATTGAAAATCGTTCGATATCTTTCAAAGAAACCGAGATAATTGAGCTCAAAGCTGACGTATTGGGTAGGCTTRTATTAAAGCAAATACGGTAGTCAGAATTCCTCTAATAGAGGATGAGAGAGCTGTGAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37566</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>265294</contig_pos>
        <strand></strand>
        <context>TTTCCCATAA[G/A]Taccgtattt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATCCATTTCCCGAATCTTCGAAAAAAAAATTGGAAACTGTTTTCCCATAA</left_flank>
        <right_flank>TACCGTATTTCCTCTAATAGAGGCTAGCCAAGCCGTCTATGTTAAGCTCA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCAAAAATTTATCAACTGATAAATTATTCATCATAATATCAGCGACATTTTATCTATTGAAAATCGTTCGATATCTTTCAAAGAAACCGAGATAATTGAGCTCAAAGCTGACGTATTGGGTAGGCTTCTATTAAAGCAAATACGGTAGTCAGAATTCCTCTAATAGAGGATGAGAGAGCTGTGAAATTGAAGGAAGTCCGGCTGACTAGCTAGCTCAACTAACATAACGACATCATTATCTACCGAGCTAGCTTATAAGAATTGAGTCGCCTGAGCTCTTTCGAGAAGTCCTATGAGCCGCCGGACAGCCGTCGGGGACAGTTAAGGTGGTCGACCATTCTTGTATTAAACTCTGATTTATACCTTATCAAGGACTAACTACTAGATGCATCTAGGAACTTAGAGCAGGGCCTCATATCTCATTTCTAGACTTATTCAGACCAGAATATCCATTTCCCGAATCTTCGAAAAAAAAATTGGAAACTGTTTTCCCATAAGTACCGTATTTCCTCTAATAGAGGCTAGCCAAGCCGTCTATGTTAAGCTCATTTATCTCGGCCCCTTCAAAAGATATCAAGAATGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACCATTTATCAGTTGACAAATTCTTGATAACTATTACAGGAAATGGGATAATTGAGCTCAAAGTAGACGGTATCTTTTTCTCTTTCCATCCCATCCCAAGACTCCGCCCCTTCCCTTCAATTTTCTGCCCAGTTGAACCCCGCCCATGTGACTTCGATCATCATCGTCCACTCCCAATTTTACCCATTTCAACATCTCTCTGTCTCTCCTCTGCGCAGGTTTACACACACAAATACGACACAAACAAATAGCGGCCAATTTTTGCCATCCATCGGCAGCAATTTTTCGGTCTCTCCCTCCTCCATTTTTCTCATTTTTCTAGAGAAAATTGCTGTTCTTCTGATGTTCTTCTCTCCTTTTCAAAGTCATCATCAGCACCCT</canonical>
            <polymorphic>TATCAAAAATTTATCAACTGATAAATTATTCATCATAATATCAGCGACATTTTATCTATTGAAAATCGTTCGATATCTTTCAAAGAAACCGAGATAATTGAGCTCAAAGCTGACGTATTGGGTAGGCTTCTATTAAAGCAAATACGGTAGTCAGAATTCCTCTAATAGAGGATGAGAGAGCTGTGAAATTGAAGGAAGTCCGGCTGACTAGCTAGCTCAACTAACATAACGACATCATTATCTACCGAGCTAGCTTATAAGAATTGAGTCGCCTGAGCTCTTTCGAGAAGTCCTATGAGCCGCCGGACAGCCGTCGGGGACAGTTAAGGTGGTCGACCATTCTTGTATTAAACTCTGATTTATACCTTATCAAGGACTAACTACTAGATGCATCTAGGAACTTAGAGCAGGGCCTCATATCTCATTTCTAGACTTATTCAGACCAGAATATCCATTTCCCGAATCTTCGAAAAAAAAATTGGAAACTGTTTTCCCATAARTACCGTATTTCCTCTAATAGAGGCTAGCCAAGCCGTCTATGTTAAGCTCATTTATCTCGGCCCCTTCAAAAGATATCAAGAATGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACCATTTATCAGTTGACAAATTCTTGATAACTATTACAGGAAATGGGATAATTGAGCTCAAAGTAGACGGTATCTTTTTCTCTTTCCATCCCATCCCAAGACTCCGCCCCTTCCCTTCAATTTTCTGCCCAGTTGAACCCCGCCCATGTGACTTCGATCATCATCGTCCACTCCCAATTTTACCCATTTCAACATCTCTCTGTCTCTCCTCTGCGCAGGTTTACACACACAAATACGACACAAACAAATAGCGGCCAATTTTTGCCATCCATCGGCAGCAATTTTTCGGTCTCTCCCTCCTCCATTTTTCTCATTTTTCTAGAGAAAATTGCTGTTCTTCTGATGTTCTTCTCTCCTTTTCAAAGTCATCATCAGCACCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATATCCATTTCCCGAATCT</pcr_primer_p1>
		<pcr_primer_p2>GGGATGGAAAGAGAAAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>AATATCCATTTCCCGAATCTTCGAAAAAAAAATTGGAAACTGTTTTCCCATAAGTACCGTATTTCCTCTAATAGAGGCTAGCCAAGCCGTCTATGTTAAGCTCATTTATCTCGGCCCCTTCAAAAGATATCAAGAATGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACCATTTATCAGTTGACAAATTCTTGATAACTATTACAGGAAATGGGATAATTGAGCTCAAAGTAGACGGTATCTTTTTCTCTTTCCATCCC</canonical_amplicon>
		<polymorphic_amplicon>AATATCCATTTCCCGAATCTTCGAAAAAAAAATTGGAAACTGTTTTCCCATAARTACCGTATTTCCTCTAATAGAGGCTAGCCAAGCCGTCTATGTTAAGCTCATTTATCTCGGCCCCTTCAAAAGATATCAAGAATGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACCATTTATCAGTTGACAAATTCTTGATAACTATTACAGGAAATGGGATAATTGAGCTCAAAGTAGACGGTATCTTTTTCTCTTTCCATCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37567</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>265321</contig_pos>
        <strand></strand>
        <context>atagaggcta[G/C]ccaagccgtc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AATTGGAAACTGTTTTCCCATAAGTACCGTATTTCCTCTAATAGAGGCTA</left_flank>
        <right_flank>CCAAGCCGTCTATGTTAAGCTCATTTATCTCGGCCCCTTCAAAAGATATC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCATCATAATATCAGCGACATTTTATCTATTGAAAATCGTTCGATATCTTTCAAAGAAACCGAGATAATTGAGCTCAAAGCTGACGTATTGGGTAGGCTTCTATTAAAGCAAATACGGTAGTCAGAATTCCTCTAATAGAGGATGAGAGAGCTGTGAAATTGAAGGAAGTCCGGCTGACTAGCTAGCTCAACTAACATAACGACATCATTATCTACCGAGCTAGCTTATAAGAATTGAGTCGCCTGAGCTCTTTCGAGAAGTCCTATGAGCCGCCGGACAGCCGTCGGGGACAGTTAAGGTGGTCGACCATTCTTGTATTAAACTCTGATTTATACCTTATCAAGGACTAACTACTAGATGCATCTAGGAACTTAGAGCAGGGCCTCATATCTCATTTCTAGACTTATTCAGACCAGAATATCCATTTCCCGAATCTTCGAAAAAAAAATTGGAAACTGTTTTCCCATAAGTACCGTATTTCCTCTAATAGAGGCTAGCCAAGCCGTCTATGTTAAGCTCATTTATCTCGGCCCCTTCAAAAGATATCAAGAATGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACCATTTATCAGTTGACAAATTCTTGATAACTATTACAGGAAATGGGATAATTGAGCTCAAAGTAGACGGTATCTTTTTCTCTTTCCATCCCATCCCAAGACTCCGCCCCTTCCCTTCAATTTTCTGCCCAGTTGAACCCCGCCCATGTGACTTCGATCATCATCGTCCACTCCCAATTTTACCCATTTCAACATCTCTCTGTCTCTCCTCTGCGCAGGTTTACACACACAAATACGACACAAACAAATAGCGGCCAATTTTTGCCATCCATCGGCAGCAATTTTTCGGTCTCTCCCTCCTCCATTTTTCTCATTTTTCTAGAGAAAATTGCTGTTCTTCTGATGTTCTTCTCTCCTTTTCAAAGTCATCATCAGCACCCTCCCATTGACATCTCCATCATTATTACT</canonical>
            <polymorphic>ATTCATCATAATATCAGCGACATTTTATCTATTGAAAATCGTTCGATATCTTTCAAAGAAACCGAGATAATTGAGCTCAAAGCTGACGTATTGGGTAGGCTTCTATTAAAGCAAATACGGTAGTCAGAATTCCTCTAATAGAGGATGAGAGAGCTGTGAAATTGAAGGAAGTCCGGCTGACTAGCTAGCTCAACTAACATAACGACATCATTATCTACCGAGCTAGCTTATAAGAATTGAGTCGCCTGAGCTCTTTCGAGAAGTCCTATGAGCCGCCGGACAGCCGTCGGGGACAGTTAAGGTGGTCGACCATTCTTGTATTAAACTCTGATTTATACCTTATCAAGGACTAACTACTAGATGCATCTAGGAACTTAGAGCAGGGCCTCATATCTCATTTCTAGACTTATTCAGACCAGAATATCCATTTCCCGAATCTTCGAAAAAAAAATTGGAAACTGTTTTCCCATAAGTACCGTATTTCCTCTAATAGAGGCTASCCAAGCCGTCTATGTTAAGCTCATTTATCTCGGCCCCTTCAAAAGATATCAAGAATGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACCATTTATCAGTTGACAAATTCTTGATAACTATTACAGGAAATGGGATAATTGAGCTCAAAGTAGACGGTATCTTTTTCTCTTTCCATCCCATCCCAAGACTCCGCCCCTTCCCTTCAATTTTCTGCCCAGTTGAACCCCGCCCATGTGACTTCGATCATCATCGTCCACTCCCAATTTTACCCATTTCAACATCTCTCTGTCTCTCCTCTGCGCAGGTTTACACACACAAATACGACACAAACAAATAGCGGCCAATTTTTGCCATCCATCGGCAGCAATTTTTCGGTCTCTCCCTCCTCCATTTTTCTCATTTTTCTAGAGAAAATTGCTGTTCTTCTGATGTTCTTCTCTCCTTTTCAAAGTCATCATCAGCACCCTCCCATTGACATCTCCATCATTATTACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCTAGC</site>
                <isoschizomers>
                    <enzyme>AsuNHI</enzyme>
                    <enzyme>BmtI</enzyme>
                    <enzyme>NheI</enzyme>
                </isoschizomers>
                <canonical_bands>504 274 184 38</canonical_bands>
                <polymorphic_bands>778 184 38</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>414 181 134 96 89 38 34 10 4</canonical_bands>
                <polymorphic_bands>510 181 134 89 38 34 10 4</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 274 186 38</canonical_bands>
                <polymorphic_bands>776 186 38</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>198 154 115 111 102 75 54 34 24 23 22 17 14 14 11 8 7 5 4 4 4</canonical_bands>
                <polymorphic_bands>198 154 115 111 102 75 54 34 24 23 22 17 14 14 11 9 8 7 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATATCCATTTCCCGAATCT</pcr_primer_p1>
		<pcr_primer_p2>GGGATGGAAAGAGAAAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>AATATCCATTTCCCGAATCTTCGAAAAAAAAATTGGAAACTGTTTTCCCATAAGTACCGTATTTCCTCTAATAGAGGCTAGCCAAGCCGTCTATGTTAAGCTCATTTATCTCGGCCCCTTCAAAAGATATCAAGAATGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACCATTTATCAGTTGACAAATTCTTGATAACTATTACAGGAAATGGGATAATTGAGCTCAAAGTAGACGGTATCTTTTTCTCTTTCCATCCC</canonical_amplicon>
		<polymorphic_amplicon>AATATCCATTTCCCGAATCTTCGAAAAAAAAATTGGAAACTGTTTTCCCATAAGTACCGTATTTCCTCTAATAGAGGCTASCCAAGCCGTCTATGTTAAGCTCATTTATCTCGGCCCCTTCAAAAGATATCAAGAATGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACCATTTATCAGTTGACAAATTCTTGATAACTATTACAGGAAATGGGATAATTGAGCTCAAAGTAGACGGTATCTTTTTCTCTTTCCATCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37568</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>265338</contig_pos>
        <strand></strand>
        <context>cgtctatgtt[A/G]agctcattta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCATAAGTACCGTATTTCCTCTAATAGAGGCTAGCCAAGCCGTCTATGTT</left_flank>
        <right_flank>AGCTCATTTATCTCGGCCCCTTCAAAAGATATCAAGAATGTGTCAACTGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGACATTTTATCTATTGAAAATCGTTCGATATCTTTCAAAGAAACCGAGATAATTGAGCTCAAAGCTGACGTATTGGGTAGGCTTCTATTAAAGCAAATACGGTAGTCAGAATTCCTCTAATAGAGGATGAGAGAGCTGTGAAATTGAAGGAAGTCCGGCTGACTAGCTAGCTCAACTAACATAACGACATCATTATCTACCGAGCTAGCTTATAAGAATTGAGTCGCCTGAGCTCTTTCGAGAAGTCCTATGAGCCGCCGGACAGCCGTCGGGGACAGTTAAGGTGGTCGACCATTCTTGTATTAAACTCTGATTTATACCTTATCAAGGACTAACTACTAGATGCATCTAGGAACTTAGAGCAGGGCCTCATATCTCATTTCTAGACTTATTCAGACCAGAATATCCATTTCCCGAATCTTCGAAAAAAAAATTGGAAACTGTTTTCCCATAAGTACCGTATTTCCTCTAATAGAGGCTAGCCAAGCCGTCTATGTTAAGCTCATTTATCTCGGCCCCTTCAAAAGATATCAAGAATGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACCATTTATCAGTTGACAAATTCTTGATAACTATTACAGGAAATGGGATAATTGAGCTCAAAGTAGACGGTATCTTTTTCTCTTTCCATCCCATCCCAAGACTCCGCCCCTTCCCTTCAATTTTCTGCCCAGTTGAACCCCGCCCATGTGACTTCGATCATCATCGTCCACTCCCAATTTTACCCATTTCAACATCTCTCTGTCTCTCCTCTGCGCAGGTTTACACACACAAATACGACACAAACAAATAGCGGCCAATTTTTGCCATCCATCGGCAGCAATTTTTCGGTCTCTCCCTCCTCCATTTTTCTCATTTTTCTAGAGAAAATTGCTGTTCTTCTGATGTTCTTCTCTCCTTTTCAAAGTCATCATCAGCACCCTCCCATTGACATCTCCATCATTATTACTTCACAATTTTTGAATTG</canonical>
            <polymorphic>CGACATTTTATCTATTGAAAATCGTTCGATATCTTTCAAAGAAACCGAGATAATTGAGCTCAAAGCTGACGTATTGGGTAGGCTTCTATTAAAGCAAATACGGTAGTCAGAATTCCTCTAATAGAGGATGAGAGAGCTGTGAAATTGAAGGAAGTCCGGCTGACTAGCTAGCTCAACTAACATAACGACATCATTATCTACCGAGCTAGCTTATAAGAATTGAGTCGCCTGAGCTCTTTCGAGAAGTCCTATGAGCCGCCGGACAGCCGTCGGGGACAGTTAAGGTGGTCGACCATTCTTGTATTAAACTCTGATTTATACCTTATCAAGGACTAACTACTAGATGCATCTAGGAACTTAGAGCAGGGCCTCATATCTCATTTCTAGACTTATTCAGACCAGAATATCCATTTCCCGAATCTTCGAAAAAAAAATTGGAAACTGTTTTCCCATAAGTACCGTATTTCCTCTAATAGAGGCTAGCCAAGCCGTCTATGTTRAGCTCATTTATCTCGGCCCCTTCAAAAGATATCAAGAATGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACCATTTATCAGTTGACAAATTCTTGATAACTATTACAGGAAATGGGATAATTGAGCTCAAAGTAGACGGTATCTTTTTCTCTTTCCATCCCATCCCAAGACTCCGCCCCTTCCCTTCAATTTTCTGCCCAGTTGAACCCCGCCCATGTGACTTCGATCATCATCGTCCACTCCCAATTTTACCCATTTCAACATCTCTCTGTCTCTCCTCTGCGCAGGTTTACACACACAAATACGACACAAACAAATAGCGGCCAATTTTTGCCATCCATCGGCAGCAATTTTTCGGTCTCTCCCTCCTCCATTTTTCTCATTTTTCTAGAGAAAATTGCTGTTCTTCTGATGTTCTTCTCTCCTTTTCAAAGTCATCATCAGCACCCTCCCATTGACATCTCCATCATTATTACTTCACAATTTTTGAATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 194 191 89 24</canonical_bands>
                <polymorphic_bands>696 191 89 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGAAACTGTTTTCCCATAA</pcr_primer_p1>
		<pcr_primer_p2>ATGGGATGGAAAGAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>TGGAAACTGTTTTCCCATAAGTACCGTATTTCCTCTAATAGAGGCTAGCCAAGCCGTCTATGTTAAGCTCATTTATCTCGGCCCCTTCAAAAGATATCAAGAATGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACCATTTATCAGTTGACAAATTCTTGATAACTATTACAGGAAATGGGATAATTGAGCTCAAAGTAGACGGTATCTTTTTCTCTTTCCATCCCAT</canonical_amplicon>
		<polymorphic_amplicon>TGGAAACTGTTTTCCCATAAGTACCGTATTTCCTCTAATAGAGGCTAGCCAAGCCGTCTATGTTRAGCTCATTTATCTCGGCCCCTTCAAAAGATATCAAGAATGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACCATTTATCAGTTGACAAATTCTTGATAACTATTACAGGAAATGGGATAATTGAGCTCAAAGTAGACGGTATCTTTTTCTCTTTCCATCCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37569</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>265357</contig_pos>
        <strand></strand>
        <context>tatctcggcc[C/T]cttcaaaaga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTAATAGAGGCTAGCCAAGCCGTCTATGTTAAGCTCATTTATCTCGGCC</left_flank>
        <right_flank>CTTCAAAAGATATCAAGAATGTGTCAACTGATAAAATATTGCTGATAATG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCGTTCGATATCTTTCAAAGAAACCGAGATAATTGAGCTCAAAGCTGACGTATTGGGTAGGCTTCTATTAAAGCAAATACGGTAGTCAGAATTCCTCTAATAGAGGATGAGAGAGCTGTGAAATTGAAGGAAGTCCGGCTGACTAGCTAGCTCAACTAACATAACGACATCATTATCTACCGAGCTAGCTTATAAGAATTGAGTCGCCTGAGCTCTTTCGAGAAGTCCTATGAGCCGCCGGACAGCCGTCGGGGACAGTTAAGGTGGTCGACCATTCTTGTATTAAACTCTGATTTATACCTTATCAAGGACTAACTACTAGATGCATCTAGGAACTTAGAGCAGGGCCTCATATCTCATTTCTAGACTTATTCAGACCAGAATATCCATTTCCCGAATCTTCGAAAAAAAAATTGGAAACTGTTTTCCCATAAGTACCGTATTTCCTCTAATAGAGGCTAGCCAAGCCGTCTATGTTAAGCTCATTTATCTCGGCCCCTTCAAAAGATATCAAGAATGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACCATTTATCAGTTGACAAATTCTTGATAACTATTACAGGAAATGGGATAATTGAGCTCAAAGTAGACGGTATCTTTTTCTCTTTCCATCCCATCCCAAGACTCCGCCCCTTCCCTTCAATTTTCTGCCCAGTTGAACCCCGCCCATGTGACTTCGATCATCATCGTCCACTCCCAATTTTACCCATTTCAACATCTCTCTGTCTCTCCTCTGCGCAGGTTTACACACACAAATACGACACAAACAAATAGCGGCCAATTTTTGCCATCCATCGGCAGCAATTTTTCGGTCTCTCCCTCCTCCATTTTTCTCATTTTTCTAGAGAAAATTGCTGTTCTTCTGATGTTCTTCTCTCCTTTTCAAAGTCATCATCAGCACCCTCCCATTGACATCTCCATCATTATTACTTCACAATTTTTGAATTGAATCCCCACCACTCATTCA</canonical>
            <polymorphic>AATCGTTCGATATCTTTCAAAGAAACCGAGATAATTGAGCTCAAAGCTGACGTATTGGGTAGGCTTCTATTAAAGCAAATACGGTAGTCAGAATTCCTCTAATAGAGGATGAGAGAGCTGTGAAATTGAAGGAAGTCCGGCTGACTAGCTAGCTCAACTAACATAACGACATCATTATCTACCGAGCTAGCTTATAAGAATTGAGTCGCCTGAGCTCTTTCGAGAAGTCCTATGAGCCGCCGGACAGCCGTCGGGGACAGTTAAGGTGGTCGACCATTCTTGTATTAAACTCTGATTTATACCTTATCAAGGACTAACTACTAGATGCATCTAGGAACTTAGAGCAGGGCCTCATATCTCATTTCTAGACTTATTCAGACCAGAATATCCATTTCCCGAATCTTCGAAAAAAAAATTGGAAACTGTTTTCCCATAAGTACCGTATTTCCTCTAATAGAGGCTAGCCAAGCCGTCTATGTTAAGCTCATTTATCTCGGCCYCTTCAAAAGATATCAAGAATGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACCATTTATCAGTTGACAAATTCTTGATAACTATTACAGGAAATGGGATAATTGAGCTCAAAGTAGACGGTATCTTTTTCTCTTTCCATCCCATCCCAAGACTCCGCCCCTTCCCTTCAATTTTCTGCCCAGTTGAACCCCGCCCATGTGACTTCGATCATCATCGTCCACTCCCAATTTTACCCATTTCAACATCTCTCTGTCTCTCCTCTGCGCAGGTTTACACACACAAATACGACACAAACAAATAGCGGCCAATTTTTGCCATCCATCGGCAGCAATTTTTCGGTCTCTCCCTCCTCCATTTTTCTCATTTTTCTAGAGAAAATTGCTGTTCTTCTGATGTTCTTCTCTCCTTTTCAAAGTCATCATCAGCACCCTCCCATTGACATCTCCATCATTATTACTTCACAATTTTTGAATTGAATCCCCACCACTCATTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>504 347 149</canonical_bands>
                <polymorphic_bands>653 347</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGAAACTGTTTTCCCATAA</pcr_primer_p1>
		<pcr_primer_p2>ATGGGATGGAAAGAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>TGGAAACTGTTTTCCCATAAGTACCGTATTTCCTCTAATAGAGGCTAGCCAAGCCGTCTATGTTAAGCTCATTTATCTCGGCCCCTTCAAAAGATATCAAGAATGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACCATTTATCAGTTGACAAATTCTTGATAACTATTACAGGAAATGGGATAATTGAGCTCAAAGTAGACGGTATCTTTTTCTCTTTCCATCCCAT</canonical_amplicon>
		<polymorphic_amplicon>TGGAAACTGTTTTCCCATAAGTACCGTATTTCCTCTAATAGAGGCTAGCCAAGCCGTCTATGTTAAGCTCATTTATCTCGGCCYCTTCAAAAGATATCAAGAATGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACCATTTATCAGTTGACAAATTCTTGATAACTATTACAGGAAATGGGATAATTGAGCTCAAAGTAGACGGTATCTTTTTCTCTTTCCATCCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37570</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>265443</contig_pos>
        <strand></strand>
        <context>attcttgata[A/T]ctattacagg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATATTGCTGATAATGTGATAAACCATTTATCAGTTGACAAATTCTTGATA</left_flank>
        <right_flank>CTATTACAGGAAATGGGATAATTGAGCTCAAAGTAGACGGTATCTTTTTC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCAGAATTCCTCTAATAGAGGATGAGAGAGCTGTGAAATTGAAGGAAGTCCGGCTGACTAGCTAGCTCAACTAACATAACGACATCATTATCTACCGAGCTAGCTTATAAGAATTGAGTCGCCTGAGCTCTTTCGAGAAGTCCTATGAGCCGCCGGACAGCCGTCGGGGACAGTTAAGGTGGTCGACCATTCTTGTATTAAACTCTGATTTATACCTTATCAAGGACTAACTACTAGATGCATCTAGGAACTTAGAGCAGGGCCTCATATCTCATTTCTAGACTTATTCAGACCAGAATATCCATTTCCCGAATCTTCGAAAAAAAAATTGGAAACTGTTTTCCCATAAGTACCGTATTTCCTCTAATAGAGGCTAGCCAAGCCGTCTATGTTAAGCTCATTTATCTCGGCCCCTTCAAAAGATATCAAGAATGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACCATTTATCAGTTGACAAATTCTTGATAACTATTACAGGAAATGGGATAATTGAGCTCAAAGTAGACGGTATCTTTTTCTCTTTCCATCCCATCCCAAGACTCCGCCCCTTCCCTTCAATTTTCTGCCCAGTTGAACCCCGCCCATGTGACTTCGATCATCATCGTCCACTCCCAATTTTACCCATTTCAACATCTCTCTGTCTCTCCTCTGCGCAGGTTTACACACACAAATACGACACAAACAAATAGCGGCCAATTTTTGCCATCCATCGGCAGCAATTTTTCGGTCTCTCCCTCCTCCATTTTTCTCATTTTTCTAGAGAAAATTGCTGTTCTTCTGATGTTCTTCTCTCCTTTTCAAAGTCATCATCAGCACCCTCCCATTGACATCTCCATCATTATTACTTCACAATTTTTGAATTGAATCCCCACCACTCATTCACACTTTCACTTTTATTTTTCTGTTTATTTACTCTCTTTTTTGTTGTCACAATAAATCGAAAAACACTTGATTTGAGACTCAAATTT</canonical>
            <polymorphic>GTCAGAATTCCTCTAATAGAGGATGAGAGAGCTGTGAAATTGAAGGAAGTCCGGCTGACTAGCTAGCTCAACTAACATAACGACATCATTATCTACCGAGCTAGCTTATAAGAATTGAGTCGCCTGAGCTCTTTCGAGAAGTCCTATGAGCCGCCGGACAGCCGTCGGGGACAGTTAAGGTGGTCGACCATTCTTGTATTAAACTCTGATTTATACCTTATCAAGGACTAACTACTAGATGCATCTAGGAACTTAGAGCAGGGCCTCATATCTCATTTCTAGACTTATTCAGACCAGAATATCCATTTCCCGAATCTTCGAAAAAAAAATTGGAAACTGTTTTCCCATAAGTACCGTATTTCCTCTAATAGAGGCTAGCCAAGCCGTCTATGTTAAGCTCATTTATCTCGGCCCCTTCAAAAGATATCAAGAATGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACCATTTATCAGTTGACAAATTCTTGATAWCTATTACAGGAAATGGGATAATTGAGCTCAAAGTAGACGGTATCTTTTTCTCTTTCCATCCCATCCCAAGACTCCGCCCCTTCCCTTCAATTTTCTGCCCAGTTGAACCCCGCCCATGTGACTTCGATCATCATCGTCCACTCCCAATTTTACCCATTTCAACATCTCTCTGTCTCTCCTCTGCGCAGGTTTACACACACAAATACGACACAAACAAATAGCGGCCAATTTTTGCCATCCATCGGCAGCAATTTTTCGGTCTCTCCCTCCTCCATTTTTCTCATTTTTCTAGAGAAAATTGCTGTTCTTCTGATGTTCTTCTCTCCTTTTCAAAGTCATCATCAGCACCCTCCCATTGACATCTCCATCATTATTACTTCACAATTTTTGAATTGAATCCCCACCACTCATTCACACTTTCACTTTTATTTTTCTGTTTATTTACTCTCTTTTTTGTTGTCACAATAAATCGAAAAACACTTGATTTGAGACTCAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAAACTGTTTTCCCATAA</pcr_primer_p1>
		<pcr_primer_p2>ATGGGATGGAAAGAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>TGGAAACTGTTTTCCCATAAGTACCGTATTTCCTCTAATAGAGGCTAGCCAAGCCGTCTATGTTAAGCTCATTTATCTCGGCCCCTTCAAAAGATATCAAGAATGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACCATTTATCAGTTGACAAATTCTTGATAACTATTACAGGAAATGGGATAATTGAGCTCAAAGTAGACGGTATCTTTTTCTCTTTCCATCCCAT</canonical_amplicon>
		<polymorphic_amplicon>TGGAAACTGTTTTCCCATAAGTACCGTATTTCCTCTAATAGAGGCTAGCCAAGCCGTCTATGTTAAGCTCATTTATCTCGGCCCCTTCAAAAGATATCAAGAATGTGTCAACTGATAAAATATTGCTGATAATGTGATAAACCATTTATCAGTTGACAAATTCTTGATAWCTATTACAGGAAATGGGATAATTGAGCTCAAAGTAGACGGTATCTTTTTCTCTTTCCATCCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37571</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>367941</contig_pos>
        <strand>+</strand>
        <context>GTTGACTCTG[A/G]AAAAAAAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTCTTTTGAATTCTTGTTTTTGAGCTCGTCTAGTTTGCGGTTGACTCTG</left_flank>
        <right_flank>AAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGACCATAAGAAGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTCTCCTGTACCAATGAGCAATTGAGGATCGGAAGCTGCACCCAGAGCCACGAAACGATATTCCTCATAGGGAATGTTTAATGGAATTTTCGATTGAAGCATTGATATGGAAAACTCGGGGAACTTGTTGCCCATTCTGCCTCTCCGCAAATCTTCGAAGTATACTTTCCGAGTACTACATTTGGATTCAGACGCTCTTGATTTCCATTACGACTTCCACGATCACCGCCACGTGGTCTCTGTTTGTTCGGGACCTGCCAGTACTTGAGACACTCATCACGAAGATTTCCCTGATCCTTGTCGAATTGTCCCTGATTCTTTGCAAAACTTTTGTACTTTTGAAGGTAGACAGTTTGACGATGGGCCAACACTTCGTTGTGCTCAATGATTTCTTTCATGAATTGCTCATCTGATTTGATGACGTCCAGAGGCATCAGTTCCATAACGTCGTCTTTTGAATTCTTGTTTTTGAGCTCGTCTAGTTTGCGGTTGACTCTGAAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGACCATAAGAAGAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGTTGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCATTGTACACCGTTACGGTAGAATGCATACTTTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCCCACCTTTAACTACATTTTTTGATTATATGCTACATGTTTCAAAGTTGTTACAACTCGTCATCCACTAGGACCTAAAATTCAGGCAGGAACTAATGAGTTTTTTAAGGAAAAATTTTCTTCAAAATCCAGATTCGCTTTCTCTTGATTTCCCCATATTTTGAGCGCACACATATTCTGGTTATGTGAAATAGTACAACGTTTCTCTTGAGAT</canonical>
            <polymorphic>CGTCTCCTGTACCAATGAGCAATTGAGGATCGGAAGCTGCACCCAGAGCCACGAAACGATATTCCTCATAGGGAATGTTTAATGGAATTTTCGATTGAAGCATTGATATGGAAAACTCGGGGAACTTGTTGCCCATTCTGCCTCTCCGCAAATCTTCGAAGTATACTTTCCGAGTACTACATTTGGATTCAGACGCTCTTGATTTCCATTACGACTTCCACGATCACCGCCACGTGGTCTCTGTTTGTTCGGGACCTGCCAGTACTTGAGACACTCATCACGAAGATTTCCCTGATCCTTGTCGAATTGTCCCTGATTCTTTGCAAAACTTTTGTACTTTTGAAGGTAGACAGTTTGACGATGGGCCAACACTTCGTTGTGCTCAATGATTTCTTTCATGAATTGCTCATCTGATTTGATGACGTCCAGAGGCATCAGTTCCATAACGTCGTCTTTTGAATTCTTGTTTTTGAGCTCGTCTAGTTTGCGGTTGACTCTGRAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGACCATAAGAAGAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGTTGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCATTGTACACCGTTACGGTAGAATGCATACTTTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCCCACCTTTAACTACATTTTTTGATTATATGCTACATGTTTCAAAGTTGTTACAACTCGTCATCCACTAGGACCTAAAATTCAGGCAGGAACTAATGAGTTTTTTAAGGAAAAATTTTCTTCAAAATCCAGATTCGCTTTCTCTTGATTTCCCCATATTTTGAGCGCACACATATTCTGGTTATGTGAAATAGTACAACGTTTCTCTTGAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>502 221 139 86 32 20</canonical_bands>
                <polymorphic_bands>588 221 139 32 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAACGTCGTCTTTTGAATTCTT</pcr_primer_p1>
		<pcr_primer_p2>CTCGCCTTATGTATGCAATC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATAACGTCGTCTTTTGAATTCTTGTTTTTGAGCTCGTCTAGTTTGCGGTTGACTCTGAAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGACCATAAGAAGAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGTTGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAGGCGAG</canonical_amplicon>
		<polymorphic_amplicon>ATAACGTCGTCTTTTGAATTCTTGTTTTTGAGCTCGTCTAGTTTGCGGTTGACTCTGRAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGACCATAAGAAGAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGTTGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAGGCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37572</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>367978</contig_pos>
        <strand></strand>
        <context>AAGGTGGGGG[A/G]MCATRAGAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCGGTTGACTCTGAAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGG</left_flank>
        <right_flank>CCATAAGAAGAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAG</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCACCCAGAGCCACGAAACGATATTCCTCATAGGGAATGTTTAATGGAATTTTCGATTGAAGCATTGATATGGAAAACTCGGGGAACTTGTTGCCCATTCTGCCTCTCCGCAAATCTTCGAAGTATACTTTCCGAGTACTACATTTGGATTCAGACGCTCTTGATTTCCATTACGACTTCCACGATCACCGCCACGTGGTCTCTGTTTGTTCGGGACCTGCCAGTACTTGAGACACTCATCACGAAGATTTCCCTGATCCTTGTCGAATTGTCCCTGATTCTTTGCAAAACTTTTGTACTTTTGAAGGTAGACAGTTTGACGATGGGCCAACACTTCGTTGTGCTCAATGATTTCTTTCATGAATTGCTCATCTGATTTGATGACGTCCAGAGGCATCAGTTCCATAACGTCGTCTTTTGAATTCTTGTTTTTGAGCTCGTCTAGTTTGCGGTTGACTCTGAAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGACCATAAGAAGAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGTTGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCATTGTACACCGTTACGGTAGAATGCATACTTTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCCCACCTTTAACTACATTTTTTGATTATATGCTACATGTTTCAAAGTTGTTACAACTCGTCATCCACTAGGACCTAAAATTCAGGCAGGAACTAATGAGTTTTTTAAGGAAAAATTTTCTTCAAAATCCAGATTCGCTTTCTCTTGATTTCCCCATATTTTGAGCGCACACATATTCTGGTTATGTGAAATAGTACAACGTTTCTCTTGAGATCTTCCCAACGTCTATTGGAATCCTTGGCTTTCTTACA</canonical>
            <polymorphic>TGCACCCAGAGCCACGAAACGATATTCCTCATAGGGAATGTTTAATGGAATTTTCGATTGAAGCATTGATATGGAAAACTCGGGGAACTTGTTGCCCATTCTGCCTCTCCGCAAATCTTCGAAGTATACTTTCCGAGTACTACATTTGGATTCAGACGCTCTTGATTTCCATTACGACTTCCACGATCACCGCCACGTGGTCTCTGTTTGTTCGGGACCTGCCAGTACTTGAGACACTCATCACGAAGATTTCCCTGATCCTTGTCGAATTGTCCCTGATTCTTTGCAAAACTTTTGTACTTTTGAAGGTAGACAGTTTGACGATGGGCCAACACTTCGTTGTGCTCAATGATTTCTTTCATGAATTGCTCATCTGATTTGATGACGTCCAGAGGCATCAGTTCCATAACGTCGTCTTTTGAATTCTTGTTTTTGAGCTCGTCTAGTTTGCGGTTGACTCTGAAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGRCCATAAGAAGAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGTTGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCATTGTACACCGTTACGGTAGAATGCATACTTTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCCCACCTTTAACTACATTTTTTGATTATATGCTACATGTTTCAAAGTTGTTACAACTCGTCATCCACTAGGACCTAAAATTCAGGCAGGAACTAATGAGTTTTTTAAGGAAAAATTTTCTTCAAAATCCAGATTCGCTTTCTCTTGATTTCCCCATATTTTGAGCGCACACATATTCTGGTTATGTGAAATAGTACAACGTTTCTCTTGAGATCTTCCCAACGTCTATTGGAATCCTTGGCTTTCTTACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>322 283 215 180</canonical_bands>
                <polymorphic_bands>605 215 180</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTAGTTTGCGGTTGACTCT</pcr_primer_p1>
		<pcr_primer_p2>GTGTACAATGCTTAATGTCACTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTAGTTTGCGGTTGACTCTGAAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGACCATAAGAAGAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGTTGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCATTGTACAC</canonical_amplicon>
		<polymorphic_amplicon>TCTAGTTTGCGGTTGACTCTGAAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGRCCATAAGAAGAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGTTGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCATTGTACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37573</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>367979</contig_pos>
        <strand></strand>
        <context>AGGTGGGGGR[C/A]CATRAGAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CGGTTGACTCTGAAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGA</left_flank>
        <right_flank>CATAAGAAGAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGG</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCACCCAGAGCCACGAAACGATATTCCTCATAGGGAATGTTTAATGGAATTTTCGATTGAAGCATTGATATGGAAAACTCGGGGAACTTGTTGCCCATTCTGCCTCTCCGCAAATCTTCGAAGTATACTTTCCGAGTACTACATTTGGATTCAGACGCTCTTGATTTCCATTACGACTTCCACGATCACCGCCACGTGGTCTCTGTTTGTTCGGGACCTGCCAGTACTTGAGACACTCATCACGAAGATTTCCCTGATCCTTGTCGAATTGTCCCTGATTCTTTGCAAAACTTTTGTACTTTTGAAGGTAGACAGTTTGACGATGGGCCAACACTTCGTTGTGCTCAATGATTTCTTTCATGAATTGCTCATCTGATTTGATGACGTCCAGAGGCATCAGTTCCATAACGTCGTCTTTTGAATTCTTGTTTTTGAGCTCGTCTAGTTTGCGGTTGACTCTGAAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGACCATAAGAAGAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGTTGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCATTGTACACCGTTACGGTAGAATGCATACTTTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCCCACCTTTAACTACATTTTTTGATTATATGCTACATGTTTCAAAGTTGTTACAACTCGTCATCCACTAGGACCTAAAATTCAGGCAGGAACTAATGAGTTTTTTAAGGAAAAATTTTCTTCAAAATCCAGATTCGCTTTCTCTTGATTTCCCCATATTTTGAGCGCACACATATTCTGGTTATGTGAAATAGTACAACGTTTCTCTTGAGATCTTCCCAACGTCTATTGGAATCCTTGGCTTTCTTACAA</canonical>
            <polymorphic>GCACCCAGAGCCACGAAACGATATTCCTCATAGGGAATGTTTAATGGAATTTTCGATTGAAGCATTGATATGGAAAACTCGGGGAACTTGTTGCCCATTCTGCCTCTCCGCAAATCTTCGAAGTATACTTTCCGAGTACTACATTTGGATTCAGACGCTCTTGATTTCCATTACGACTTCCACGATCACCGCCACGTGGTCTCTGTTTGTTCGGGACCTGCCAGTACTTGAGACACTCATCACGAAGATTTCCCTGATCCTTGTCGAATTGTCCCTGATTCTTTGCAAAACTTTTGTACTTTTGAAGGTAGACAGTTTGACGATGGGCCAACACTTCGTTGTGCTCAATGATTTCTTTCATGAATTGCTCATCTGATTTGATGACGTCCAGAGGCATCAGTTCCATAACGTCGTCTTTTGAATTCTTGTTTTTGAGCTCGTCTAGTTTGCGGTTGACTCTGAAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGAMCATAAGAAGAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGTTGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCATTGTACACCGTTACGGTAGAATGCATACTTTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCCCACCTTTAACTACATTTTTTGATTATATGCTACATGTTTCAAAGTTGTTACAACTCGTCATCCACTAGGACCTAAAATTCAGGCAGGAACTAATGAGTTTTTTAAGGAAAAATTTTCTTCAAAATCCAGATTCGCTTTCTCTTGATTTCCCCATATTTTGAGCGCACACATATTCTGGTTATGTGAAATAGTACAACGTTTCTCTTGAGATCTTCCCAACGTCTATTGGAATCCTTGGCTTTCTTACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>322 283 214 181</canonical_bands>
                <polymorphic_bands>605 214 181</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>218 214 181 172 111 104</canonical_bands>
                <polymorphic_bands>390 214 181 111 104</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>283 283 215 131 88</canonical_bands>
                <polymorphic_bands>371 283 215 131</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTAGTTTGCGGTTGACTCT</pcr_primer_p1>
		<pcr_primer_p2>GTGTACAATGCTTAATGTCACTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTAGTTTGCGGTTGACTCTGAAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGACCATAAGAAGAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGTTGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCATTGTACAC</canonical_amplicon>
		<polymorphic_amplicon>TCTAGTTTGCGGTTGACTCTGAAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGAMCATAAGAAGAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGTTGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCATTGTACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37574</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>367983</contig_pos>
        <strand></strand>
        <context>GGGGGRMCAT[A/G]AGAAGAATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGACTCTGAAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGACCAT</left_flank>
        <right_flank>AGAAGAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTT</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGAGCCACGAAACGATATTCCTCATAGGGAATGTTTAATGGAATTTTCGATTGAAGCATTGATATGGAAAACTCGGGGAACTTGTTGCCCATTCTGCCTCTCCGCAAATCTTCGAAGTATACTTTCCGAGTACTACATTTGGATTCAGACGCTCTTGATTTCCATTACGACTTCCACGATCACCGCCACGTGGTCTCTGTTTGTTCGGGACCTGCCAGTACTTGAGACACTCATCACGAAGATTTCCCTGATCCTTGTCGAATTGTCCCTGATTCTTTGCAAAACTTTTGTACTTTTGAAGGTAGACAGTTTGACGATGGGCCAACACTTCGTTGTGCTCAATGATTTCTTTCATGAATTGCTCATCTGATTTGATGACGTCCAGAGGCATCAGTTCCATAACGTCGTCTTTTGAATTCTTGTTTTTGAGCTCGTCTAGTTTGCGGTTGACTCTGAAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGACCATAAGAAGAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGTTGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCATTGTACACCGTTACGGTAGAATGCATACTTTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCCCACCTTTAACTACATTTTTTGATTATATGCTACATGTTTCAAAGTTGTTACAACTCGTCATCCACTAGGACCTAAAATTCAGGCAGGAACTAATGAGTTTTTTAAGGAAAAATTTTCTTCAAAATCCAGATTCGCTTTCTCTTGATTTCCCCATATTTTGAGCGCACACATATTCTGGTTATGTGAAATAGTACAACGTTTCTCTTGAGATCTTCCCAACGTCTATTGGAATCCTTGGCTTTCTTACAATTTG</canonical>
            <polymorphic>CCAGAGCCACGAAACGATATTCCTCATAGGGAATGTTTAATGGAATTTTCGATTGAAGCATTGATATGGAAAACTCGGGGAACTTGTTGCCCATTCTGCCTCTCCGCAAATCTTCGAAGTATACTTTCCGAGTACTACATTTGGATTCAGACGCTCTTGATTTCCATTACGACTTCCACGATCACCGCCACGTGGTCTCTGTTTGTTCGGGACCTGCCAGTACTTGAGACACTCATCACGAAGATTTCCCTGATCCTTGTCGAATTGTCCCTGATTCTTTGCAAAACTTTTGTACTTTTGAAGGTAGACAGTTTGACGATGGGCCAACACTTCGTTGTGCTCAATGATTTCTTTCATGAATTGCTCATCTGATTTGATGACGTCCAGAGGCATCAGTTCCATAACGTCGTCTTTTGAATTCTTGTTTTTGAGCTCGTCTAGTTTGCGGTTGACTCTGAAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGACCATRAGAAGAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGTTGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCATTGTACACCGTTACGGTAGAATGCATACTTTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCCCACCTTTAACTACATTTTTTGATTATATGCTACATGTTTCAAAGTTGTTACAACTCGTCATCCACTAGGACCTAAAATTCAGGCAGGAACTAATGAGTTTTTTAAGGAAAAATTTTCTTCAAAATCCAGATTCGCTTTCTCTTGATTTCCCCATATTTTGAGCGCACACATATTCTGGTTATGTGAAATAGTACAACGTTTCTCTTGAGATCTTCCCAACGTCTATTGGAATCCTTGGCTTTCTTACAATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAGTTTGCGGTTGACTCT</pcr_primer_p1>
		<pcr_primer_p2>GTGTACAATGCTTAATGTCACTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTAGTTTGCGGTTGACTCTGAAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGACCATAAGAAGAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGTTGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCATTGTACAC</canonical_amplicon>
		<polymorphic_amplicon>TCTAGTTTGCGGTTGACTCTGAAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGACCATRAGAAGAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGTTGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCATTGTACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37575</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>367998</contig_pos>
        <strand>+</strand>
        <context>GAATAATGTT[C/G]TCGAAattcc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAGAGGTAAATTACTCTTTAAAGGTGGGGGACCATAAGAAGAATAATGTT</left_flank>
        <right_flank>TCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATATTCCTCATAGGGAATGTTTAATGGAATTTTCGATTGAAGCATTGATATGGAAAACTCGGGGAACTTGTTGCCCATTCTGCCTCTCCGCAAATCTTCGAAGTATACTTTCCGAGTACTACATTTGGATTCAGACGCTCTTGATTTCCATTACGACTTCCACGATCACCGCCACGTGGTCTCTGTTTGTTCGGGACCTGCCAGTACTTGAGACACTCATCACGAAGATTTCCCTGATCCTTGTCGAATTGTCCCTGATTCTTTGCAAAACTTTTGTACTTTTGAAGGTAGACAGTTTGACGATGGGCCAACACTTCGTTGTGCTCAATGATTTCTTTCATGAATTGCTCATCTGATTTGATGACGTCCAGAGGCATCAGTTCCATAACGTCGTCTTTTGAATTCTTGTTTTTGAGCTCGTCTAGTTTGCGGTTGACTCTGAAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGACCATAAGAAGAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGTTGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCATTGTACACCGTTACGGTAGAATGCATACTTTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCCCACCTTTAACTACATTTTTTGATTATATGCTACATGTTTCAAAGTTGTTACAACTCGTCATCCACTAGGACCTAAAATTCAGGCAGGAACTAATGAGTTTTTTAAGGAAAAATTTTCTTCAAAATCCAGATTCGCTTTCTCTTGATTTCCCCATATTTTGAGCGCACACATATTCTGGTTATGTGAAATAGTACAACGTTTCTCTTGAGATCTTCCCAACGTCTATTGGAATCCTTGGCTTTCTTACAATTTGGAATTCCAAAAGATC</canonical>
            <polymorphic>GATATTCCTCATAGGGAATGTTTAATGGAATTTTCGATTGAAGCATTGATATGGAAAACTCGGGGAACTTGTTGCCCATTCTGCCTCTCCGCAAATCTTCGAAGTATACTTTCCGAGTACTACATTTGGATTCAGACGCTCTTGATTTCCATTACGACTTCCACGATCACCGCCACGTGGTCTCTGTTTGTTCGGGACCTGCCAGTACTTGAGACACTCATCACGAAGATTTCCCTGATCCTTGTCGAATTGTCCCTGATTCTTTGCAAAACTTTTGTACTTTTGAAGGTAGACAGTTTGACGATGGGCCAACACTTCGTTGTGCTCAATGATTTCTTTCATGAATTGCTCATCTGATTTGATGACGTCCAGAGGCATCAGTTCCATAACGTCGTCTTTTGAATTCTTGTTTTTGAGCTCGTCTAGTTTGCGGTTGACTCTGAAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGACCATAAGAAGAATAATGTTSTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGTTGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCATTGTACACCGTTACGGTAGAATGCATACTTTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCCCACCTTTAACTACATTTTTTGATTATATGCTACATGTTTCAAAGTTGTTACAACTCGTCATCCACTAGGACCTAAAATTCAGGCAGGAACTAATGAGTTTTTTAAGGAAAAATTTTCTTCAAAATCCAGATTCGCTTTCTCTTGATTTCCCCATATTTTGAGCGCACACATATTCTGGTTATGTGAAATAGTACAACGTTTCTCTTGAGATCTTCCCAACGTCTATTGGAATCCTTGGCTTTCTTACAATTTGGAATTCCAAAAGATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>358 141 131 118 64 63 52 29 29 15</canonical_bands>
                <polymorphic_bands>489 141 118 64 63 52 29 29 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTAGTTTGCGGTTGACTCT</pcr_primer_p1>
		<pcr_primer_p2>GTGTACAATGCTTAATGTCACTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTAGTTTGCGGTTGACTCTGAAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGACCATAAGAAGAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGTTGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCATTGTACAC</canonical_amplicon>
		<polymorphic_amplicon>TCTAGTTTGCGGTTGACTCTGAAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGACCATAAGAAGAATAATGTTSTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGTTGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCATTGTACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37576</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>368021</contig_pos>
        <strand></strand>
        <context>tcaaagatgc[C/T]cctcgaggag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGGGGGACCATAAGAAGAATAATGTTCTCGAAATTCCGTTCAAAGATGC</left_flank>
        <right_flank>CCTCGAGGAGTTGAACTTGTGAGGGCGTTGATTGAGGGTGCGGCGCCGCT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGGAATTTTCGATTGAAGCATTGATATGGAAAACTCGGGGAACTTGTTGCCCATTCTGCCTCTCCGCAAATCTTCGAAGTATACTTTCCGAGTACTACATTTGGATTCAGACGCTCTTGATTTCCATTACGACTTCCACGATCACCGCCACGTGGTCTCTGTTTGTTCGGGACCTGCCAGTACTTGAGACACTCATCACGAAGATTTCCCTGATCCTTGTCGAATTGTCCCTGATTCTTTGCAAAACTTTTGTACTTTTGAAGGTAGACAGTTTGACGATGGGCCAACACTTCGTTGTGCTCAATGATTTCTTTCATGAATTGCTCATCTGATTTGATGACGTCCAGAGGCATCAGTTCCATAACGTCGTCTTTTGAATTCTTGTTTTTGAGCTCGTCTAGTTTGCGGTTGACTCTGAAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGACCATAAGAAGAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGTTGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCATTGTACACCGTTACGGTAGAATGCATACTTTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCCCACCTTTAACTACATTTTTTGATTATATGCTACATGTTTCAAAGTTGTTACAACTCGTCATCCACTAGGACCTAAAATTCAGGCAGGAACTAATGAGTTTTTTAAGGAAAAATTTTCTTCAAAATCCAGATTCGCTTTCTCTTGATTTCCCCATATTTTGAGCGCACACATATTCTGGTTATGTGAAATAGTACAACGTTTCTCTTGAGATCTTCCCAACGTCTATTGGAATCCTTGGCTTTCTTACAATTTGGAATTCCAAAAGATCCATCAACTCCCAGAAAGTTGTGC</canonical>
            <polymorphic>AATGGAATTTTCGATTGAAGCATTGATATGGAAAACTCGGGGAACTTGTTGCCCATTCTGCCTCTCCGCAAATCTTCGAAGTATACTTTCCGAGTACTACATTTGGATTCAGACGCTCTTGATTTCCATTACGACTTCCACGATCACCGCCACGTGGTCTCTGTTTGTTCGGGACCTGCCAGTACTTGAGACACTCATCACGAAGATTTCCCTGATCCTTGTCGAATTGTCCCTGATTCTTTGCAAAACTTTTGTACTTTTGAAGGTAGACAGTTTGACGATGGGCCAACACTTCGTTGTGCTCAATGATTTCTTTCATGAATTGCTCATCTGATTTGATGACGTCCAGAGGCATCAGTTCCATAACGTCGTCTTTTGAATTCTTGTTTTTGAGCTCGTCTAGTTTGCGGTTGACTCTGAAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGACCATAAGAAGAATAATGTTCTCGAAATTCCGTTCAAAGATGCYCCTCGAGGAGTTGAACTTGTGAGGGCGTTGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCATTGTACACCGTTACGGTAGAATGCATACTTTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCCCACCTTTAACTACATTTTTTGATTATATGCTACATGTTTCAAAGTTGTTACAACTCGTCATCCACTAGGACCTAAAATTCAGGCAGGAACTAATGAGTTTTTTAAGGAAAAATTTTCTTCAAAATCCAGATTCGCTTTCTCTTGATTTCCCCATATTTTGAGCGCACACATATTCTGGTTATGTGAAATAGTACAACGTTTCTCTTGAGATCTTCCCAACGTCTATTGGAATCCTTGGCTTTCTTACAATTTGGAATTCCAAAAGATCCATCAACTCCCAGAAAGTTGTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAGTTTGCGGTTGACTCT</pcr_primer_p1>
		<pcr_primer_p2>GTGTACAATGCTTAATGTCACTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTAGTTTGCGGTTGACTCTGAAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGACCATAAGAAGAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGTTGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCATTGTACAC</canonical_amplicon>
		<polymorphic_amplicon>TCTAGTTTGCGGTTGACTCTGAAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGACCATAAGAAGAATAATGTTCTCGAAATTCCGTTCAAAGATGCYCCTCGAGGAGTTGAACTTGTGAGGGCGTTGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCATTGTACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37577</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>368049</contig_pos>
        <strand></strand>
        <context>tgTGAGGGCG[T/A]TGATTGAGGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCG</left_flank>
        <right_flank>TGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGAAAACTCGGGGAACTTGTTGCCCATTCTGCCTCTCCGCAAATCTTCGAAGTATACTTTCCGAGTACTACATTTGGATTCAGACGCTCTTGATTTCCATTACGACTTCCACGATCACCGCCACGTGGTCTCTGTTTGTTCGGGACCTGCCAGTACTTGAGACACTCATCACGAAGATTTCCCTGATCCTTGTCGAATTGTCCCTGATTCTTTGCAAAACTTTTGTACTTTTGAAGGTAGACAGTTTGACGATGGGCCAACACTTCGTTGTGCTCAATGATTTCTTTCATGAATTGCTCATCTGATTTGATGACGTCCAGAGGCATCAGTTCCATAACGTCGTCTTTTGAATTCTTGTTTTTGAGCTCGTCTAGTTTGCGGTTGACTCTGAAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGACCATAAGAAGAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGTTGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCATTGTACACCGTTACGGTAGAATGCATACTTTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCCCACCTTTAACTACATTTTTTGATTATATGCTACATGTTTCAAAGTTGTTACAACTCGTCATCCACTAGGACCTAAAATTCAGGCAGGAACTAATGAGTTTTTTAAGGAAAAATTTTCTTCAAAATCCAGATTCGCTTTCTCTTGATTTCCCCATATTTTGAGCGCACACATATTCTGGTTATGTGAAATAGTACAACGTTTCTCTTGAGATCTTCCCAACGTCTATTGGAATCCTTGGCTTTCTTACAATTTGGAATTCCAAAAGATCCATCAACTCCCAGAAAGTTGTGCTAAATTGATGATGCGAAATTCAGCACTT</canonical>
            <polymorphic>TGGAAAACTCGGGGAACTTGTTGCCCATTCTGCCTCTCCGCAAATCTTCGAAGTATACTTTCCGAGTACTACATTTGGATTCAGACGCTCTTGATTTCCATTACGACTTCCACGATCACCGCCACGTGGTCTCTGTTTGTTCGGGACCTGCCAGTACTTGAGACACTCATCACGAAGATTTCCCTGATCCTTGTCGAATTGTCCCTGATTCTTTGCAAAACTTTTGTACTTTTGAAGGTAGACAGTTTGACGATGGGCCAACACTTCGTTGTGCTCAATGATTTCTTTCATGAATTGCTCATCTGATTTGATGACGTCCAGAGGCATCAGTTCCATAACGTCGTCTTTTGAATTCTTGTTTTTGAGCTCGTCTAGTTTGCGGTTGACTCTGAAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGACCATAAGAAGAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGWTGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCATTGTACACCGTTACGGTAGAATGCATACTTTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCCCACCTTTAACTACATTTTTTGATTATATGCTACATGTTTCAAAGTTGTTACAACTCGTCATCCACTAGGACCTAAAATTCAGGCAGGAACTAATGAGTTTTTTAAGGAAAAATTTTCTTCAAAATCCAGATTCGCTTTCTCTTGATTTCCCCATATTTTGAGCGCACACATATTCTGGTTATGTGAAATAGTACAACGTTTCTCTTGAGATCTTCCCAACGTCTATTGGAATCCTTGGCTTTCTTACAATTTGGAATTCCAAAAGATCCATCAACTCCCAGAAAGTTGTGCTAAATTGATGATGCGAAATTCAGCACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAGTTTGCGGTTGACTCT</pcr_primer_p1>
		<pcr_primer_p2>GTGTACAATGCTTAATGTCACTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTAGTTTGCGGTTGACTCTGAAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGACCATAAGAAGAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGTTGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCATTGTACAC</canonical_amplicon>
		<polymorphic_amplicon>TCTAGTTTGCGGTTGACTCTGAAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGACCATAAGAAGAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGWTGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCATTGTACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37578</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>368323</contig_pos>
        <strand>+</strand>
        <context>GCAGGAACTA[A/C]TGAGTTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTTGTTACAACTCGTCATCCACTAGGACCTAAAATTCAGGCAGGAACTA</left_flank>
        <right_flank>TGAGTTTTTTAAGGAAAAATTTTCTTCAAAATCCAGATTCGCTTTCTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAATGATTTCTTTCATGAATTGCTCATCTGATTTGATGACGTCCAGAGGCATCAGTTCCATAACGTCGTCTTTTGAATTCTTGTTTTTGAGCTCGTCTAGTTTGCGGTTGACTCTGAAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGACCATAAGAAGAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGTTGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCATTGTACACCGTTACGGTAGAATGCATACTTTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCCCACCTTTAACTACATTTTTTGATTATATGCTACATGTTTCAAAGTTGTTACAACTCGTCATCCACTAGGACCTAAAATTCAGGCAGGAACTAATGAGTTTTTTAAGGAAAAATTTTCTTCAAAATCCAGATTCGCTTTCTCTTGATTTCCCCATATTTTGAGCGCACACATATTCTGGTTATGTGAAATAGTACAACGTTTCTCTTGAGATCTTCCCAACGTCTATTGGAATCCTTGGCTTTCTTACAATTTGGAATTCCAAAAGATCCATCAACTCCCAGAAAGTTGTGCTAAATTGATGATGCGAAATTCAGCACTTCTTTTTGAAGCATCGAATTTGTTGCTTCACTGCTTTTCATCAATGATGAAGTGCTAACTTTTGTATCACCAATTTATGTGCGCTAATTTTGGAAGTTGGTAGATCTTTCGCAATTCAAAATTGAAAAAAAGCCGAACATTCCAATGGAGGTTGGGAAGGTCGTCCGTTCAGAACATGGATTTCGAAATCACGAGAAAAGAAAGCAGTTCCTACCTCAATTTCTGGTCCTAGTGGATGAAGGTTTAAAAATAGAATTACCTCTTCAAATACTCCT</canonical>
            <polymorphic>TCAATGATTTCTTTCATGAATTGCTCATCTGATTTGATGACGTCCAGAGGCATCAGTTCCATAACGTCGTCTTTTGAATTCTTGTTTTTGAGCTCGTCTAGTTTGCGGTTGACTCTGAAAAAAAAAGAGGTAAATTACTCTTTAAAGGTGGGGGACCATAAGAAGAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGTTGATTGAGGGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCATTGTACACCGTTACGGTAGAATGCATACTTTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCCCACCTTTAACTACATTTTTTGATTATATGCTACATGTTTCAAAGTTGTTACAACTCGTCATCCACTAGGACCTAAAATTCAGGCAGGAACTAMTGAGTTTTTTAAGGAAAAATTTTCTTCAAAATCCAGATTCGCTTTCTCTTGATTTCCCCATATTTTGAGCGCACACATATTCTGGTTATGTGAAATAGTACAACGTTTCTCTTGAGATCTTCCCAACGTCTATTGGAATCCTTGGCTTTCTTACAATTTGGAATTCCAAAAGATCCATCAACTCCCAGAAAGTTGTGCTAAATTGATGATGCGAAATTCAGCACTTCTTTTTGAAGCATCGAATTTGTTGCTTCACTGCTTTTCATCAATGATGAAGTGCTAACTTTTGTATCACCAATTTATGTGCGCTAATTTTGGAAGTTGGTAGATCTTTCGCAATTCAAAATTGAAAAAAAGCCGAACATTCCAATGGAGGTTGGGAAGGTCGTCCGTTCAGAACATGGATTTCGAAATCACGAGAAAAGAAAGCAGTTCCTACCTCAATTTCTGGTCCTAGTGGATGAAGGTTTAAAAATAGAATTACCTCTTCAAATACTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTACGCAGAGTGACATTAAG</pcr_primer_p1>
		<pcr_primer_p2>AAATATGGGGAAATCAAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGTACGCAGAGTGACATTAAGCATTGTACACCGTTACGGTAGAATGCATACTTTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCCCACCTTTAACTACATTTTTTGATTATATGCTACATGTTTCAAAGTTGTTACAACTCGTCATCCACTAGGACCTAAAATTCAGGCAGGAACTAATGAGTTTTTTAAGGAAAAATTTTCTTCAAAATCCAGATTCGCTTTCTCTTGATTTCCCCATATTT</canonical_amplicon>
		<polymorphic_amplicon>CTGTACGCAGAGTGACATTAAGCATTGTACACCGTTACGGTAGAATGCATACTTTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCCCACCTTTAACTACATTTTTTGATTATATGCTACATGTTTCAAAGTTGTTACAACTCGTCATCCACTAGGACCTAAAATTCAGGCAGGAACTAMTGAGTTTTTTAAGGAAAAATTTTCTTCAAAATCCAGATTCGCTTTCTCTTGATTTCCCCATATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37579</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>370024</contig_pos>
        <strand></strand>
        <context>TTTCTGAAAA[A/T]AAACCAGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCCACGAAGTCATCTTCGTCATCGTCAAGATTTACGCGTTTTCTGAAAA</left_flank>
        <right_flank>AAACCAGAATTTTCACAAAAATCAGAAGAGAAACTTACTTGAAAACCTGT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAGGAAGAAAGCGGAACCAATGGTTTCATATGGGTTCGCACGGGTTCTGGCTTCTCTGATATCTTTTTCTGACATCGAATCGAACACATTCTTAGCTTCAAGCATATCTTTTAGCTTTTTCTCACTACAGAATTTAGTTTCGTCATCAATGACTTTCTTTTCTTTCCGTACAACCATCCACTGATCGTCTTTTATCAGTTTATCACAAATCTCTCTTCTAATTCCTTCATCGATATTAGTCATCCAAATAACTGTCTCCTCAACTGTCTTATTCTCTGTTGAATCATCCCATTGCTCATGACCAAGTCCAGCTTTTCCTTCGCGAAATGAAATAGCAATGGGCTCTTGGATTCCTTGTTTGTTCTTTCCAAGACCTTCTCCTGCTTTATAACCCATTCTTTCCATCTTTTTCTCTGCTTTCGTCTTTTGTTCAGTTGGTGACGGATCGTCCACGAAGTCATCTTCGTCATCGTCAAGATTTACGCGTTTTCTGAAAAAAAACCAGAATTTTCACAAAAATCAGAAGAGAAACTTACTTGAAAACCTGTACGCTCTTTTTGAGACAAAGGGGATAGAGACAGAATCGCTTAGACGATCAACAAAGACGTACATCAGGACAATTCAGGAAGAGAGCGTGCCGGCTTTATTTCAAGTAATTTTCTCTTCAGATTTTTTGCGGAAATTCGAATTTTTCAGTAAAAACGCGCACATCCTGTCGGAGAGGTGAGGAAGAATGTCGTCCATCCTCTGAAATATATCGTAACATCCAAAAAATTCCAATTTTTCAAAAAGATATACACAAAGGCTCAATGAACCGTGCAAGCCATGATATTATTGATTTATTACGCATTTTTATTAGAGGCAACAAAGTTTAATTGAATATAGGAAGGTCACTTTAAATGCGGTAATAGTGTGTTACACACATAAAAAGAAAGAAAAAAAATTAAATTAAATTTCGGTAACAGAAAAAAATGAACATAAAAATTAATAGACGTATT</canonical>
            <polymorphic>TTTAGGAAGAAAGCGGAACCAATGGTTTCATATGGGTTCGCACGGGTTCTGGCTTCTCTGATATCTTTTTCTGACATCGAATCGAACACATTCTTAGCTTCAAGCATATCTTTTAGCTTTTTCTCACTACAGAATTTAGTTTCGTCATCAATGACTTTCTTTTCTTTCCGTACAACCATCCACTGATCGTCTTTTATCAGTTTATCACAAATCTCTCTTCTAATTCCTTCATCGATATTAGTCATCCAAATAACTGTCTCCTCAACTGTCTTATTCTCTGTTGAATCATCCCATTGCTCATGACCAAGTCCAGCTTTTCCTTCGCGAAATGAAATAGCAATGGGCTCTTGGATTCCTTGTTTGTTCTTTCCAAGACCTTCTCCTGCTTTATAACCCATTCTTTCCATCTTTTTCTCTGCTTTCGTCTTTTGTTCAGTTGGTGACGGATCGTCCACGAAGTCATCTTCGTCATCGTCAAGATTTACGCGTTTTCTGAAAAWAAACCAGAATTTTCACAAAAATCAGAAGAGAAACTTACTTGAAAACCTGTACGCTCTTTTTGAGACAAAGGGGATAGAGACAGAATCGCTTAGACGATCAACAAAGACGTACATCAGGACAATTCAGGAAGAGAGCGTGCCGGCTTTATTTCAAGTAATTTTCTCTTCAGATTTTTTGCGGAAATTCGAATTTTTCAGTAAAAACGCGCACATCCTGTCGGAGAGGTGAGGAAGAATGTCGTCCATCCTCTGAAATATATCGTAACATCCAAAAAATTCCAATTTTTCAAAAAGATATACACAAAGGCTCAATGAACCGTGCAAGCCATGATATTATTGATTTATTACGCATTTTTATTAGAGGCAACAAAGTTTAATTGAATATAGGAAGGTCACTTTAAATGCGGTAATAGTGTGTTACACACATAAAAAGAAAGAAAAAAAATTAAATTAAATTTCGGTAACAGAAAAAAATGAACATAAAAATTAATAGACGTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCTTCTCCTGCTTTATAACC</pcr_primer_p1>
		<pcr_primer_p2>AATTGTCCTGATGTACGTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GACCTTCTCCTGCTTTATAACCCATTCTTTCCATCTTTTTCTCTGCTTTCGTCTTTTGTTCAGTTGGTGACGGATCGTCCACGAAGTCATCTTCGTCATCGTCAAGATTTACGCGTTTTCTGAAAAAAAACCAGAATTTTCACAAAAATCAGAAGAGAAACTTACTTGAAAACCTGTACGCTCTTTTTGAGACAAAGGGGATAGAGACAGAATCGCTTAGACGATCAACAAAGACGTACATCAGGACAATT</canonical_amplicon>
		<polymorphic_amplicon>GACCTTCTCCTGCTTTATAACCCATTCTTTCCATCTTTTTCTCTGCTTTCGTCTTTTGTTCAGTTGGTGACGGATCGTCCACGAAGTCATCTTCGTCATCGTCAAGATTTACGCGTTTTCTGAAAAWAAACCAGAATTTTCACAAAAATCAGAAGAGAAACTTACTTGAAAACCTGTACGCTCTTTTTGAGACAAAGGGGATAGAGACAGAATCGCTTAGACGATCAACAAAGACGTACATCAGGACAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37580</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>395630</contig_pos>
        <strand>+</strand>
        <context>GGAAGTGAGC[A/G]AAAAAAARCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCCGATTTGTACGGTCTCTTTTTTGCGGGGAAAATGTAGGGAAGTGAGC</left_flank>
        <right_flank>AAAAAAAACTGTAACTCGGAAATAAATGCATATTTTTGGAAGAAAATGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATTTTTTTCGAATTTATGTTGTTTTGTCTGCAATCCAATGTTTTTCCTGTATTTTTAGCATTCGGAAACCCGAAAATTGCCGGAAAAAAAATCGCAGATTTTCCGCGCGGCAGTCTTGCTCGCCAACTTCGCCCCGCCCACTTTTCCGCGGCGCGCGCATTTTTTGCGAGACCGTACAAATCGGAAGGATTTCTCGACCGGAGGAAAACGAAACGGGAGGAAACGAATCGGAAGAAAACGAAAGCGAAGGAAACGAAACGGGAGGAACGGAAGCGTGCAGCATTTTTGCAAAAAAAAGCATGCGGAAGGTTGCGAAAGGGCGGGGTCTCGCTCAGAAAGTTCAGAAAAACACGAAAGGACTCTCTTGCCCCGCCTTTAAAATCCTGCCCGCTTCCGTTCCTCCCGTTTCGTTTTCTCCCGTTTCGTTTTCCTCCGGCCGAGAAATCCTCCCGATTTGTACGGTCTCTTTTTTGCGGGGAAAATGTAGGGAAGTGAGCAAAAAAAAACTGTAACTCGGAAATAAATGCATATTTTTGGAAGAAAATGTGAGATTATGCTAATTAGAAATGGATAATTAGTATGAAATCAACATATTTCAGAAAAAAAAAACTGATTTTTACCCTTTTTAGCGTTTTTCAATTTGCGACTTGAATATTCCGAAAACTAAACGGTTTTCAGCTCGCATTTCAACACCAGTGTATTTCTCGTGTTTGCTTAACCCAAAAAAACACAAAATCGCGAGATAATTTATCAAAAAACTCCAAATTTAGGCCTTCATGTCTTTTTACCTGCAAATTTTTCAGCTTCTCTAGCCGCTCCTTCTCCGCATTCCCACCAGTAATCTCGTCCATGCGCTTCACAATTCCAGATCCAGAACAAGGCGGATCAACGATAGCAAATTTTACCTGAAAAATTAGAATTTTTGAGAGAAAACAGGGGTTTGAAACCTTCGAGAACTTCTTATCGGTCACATCAGTTTTCAAGAAATCTCCACAGAA</canonical>
            <polymorphic>CCATTTTTTTCGAATTTATGTTGTTTTGTCTGCAATCCAATGTTTTTCCTGTATTTTTAGCATTCGGAAACCCGAAAATTGCCGGAAAAAAAATCGCAGATTTTCCGCGCGGCAGTCTTGCTCGCCAACTTCGCCCCGCCCACTTTTCCGCGGCGCGCGCATTTTTTGCGAGACCGTACAAATCGGAAGGATTTCTCGACCGGAGGAAAACGAAACGGGAGGAAACGAATCGGAAGAAAACGAAAGCGAAGGAAACGAAACGGGAGGAACGGAAGCGTGCAGCATTTTTGCAAAAAAAAGCATGCGGAAGGTTGCGAAAGGGCGGGGTCTCGCTCAGAAAGTTCAGAAAAACACGAAAGGACTCTCTTGCCCCGCCTTTAAAATCCTGCCCGCTTCCGTTCCTCCCGTTTCGTTTTCTCCCGTTTCGTTTTCCTCCGGCCGAGAAATCCTCCCGATTTGTACGGTCTCTTTTTTGCGGGGAAAATGTAGGGAAGTGAGCRAAAAAAAACTGTAACTCGGAAATAAATGCATATTTTTGGAAGAAAATGTGAGATTATGCTAATTAGAAATGGATAATTAGTATGAAATCAACATATTTCAGAAAAAAAAAACTGATTTTTACCCTTTTTAGCGTTTTTCAATTTGCGACTTGAATATTCCGAAAACTAAACGGTTTTCAGCTCGCATTTCAACACCAGTGTATTTCTCGTGTTTGCTTAACCCAAAAAAACACAAAATCGCGAGATAATTTATCAAAAAACTCCAAATTTAGGCCTTCATGTCTTTTTACCTGCAAATTTTTCAGCTTCTCTAGCCGCTCCTTCTCCGCATTCCCACCAGTAATCTCGTCCATGCGCTTCACAATTCCAGATCCAGAACAAGGCGGATCAACGATAGCAAATTTTACCTGAAAAATTAGAATTTTTGAGAGAAAACAGGGGTTTGAAACCTTCGAGAACTTCTTATCGGTCACATCAGTTTTCAAGAAATCTCCACAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATCCAATGTTTTTCCTGTAT</pcr_primer_p1>
		<pcr_primer_p2>TAATCTCACATTTTCTTCCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>524</pcr_amplicon_size>
		<canonical_amplicon>CAATCCAATGTTTTTCCTGTATTTTTAGCATTCGGAAACCCGAAAATTGCCGGAAAAAAAATCGCAGATTTTCCGCGCGGCAGTCTTGCTCGCCAACTTCGCCCCGCCCACTTTTCCGCGGCGCGCGCATTTTTTGCGAGACCGTACAAATCGGAAGGATTTCTCGACCGGAGGAAAACGAAACGGGAGGAAACGAATCGGAAGAAAACGAAAGCGAAGGAAACGAAACGGGAGGAACGGAAGCGTGCAGCATTTTTGCAAAAAAAAGCATGCGGAAGGTTGCGAAAGGGCGGGGTCTCGCTCAGAAAGTTCAGAAAAACACGAAAGGACTCTCTTGCCCCGCCTTTAAAATCCTGCCCGCTTCCGTTCCTCCCGTTTCGTTTTCTCCCGTTTCGTTTTCCTCCGGCCGAGAAATCCTCCCGATTTGTACGGTCTCTTTTTTGCGGGGAAAATGTAGGGAAGTGAGCAAAAAAAAACTGTAACTCGGAAATAAATGCATATTTTTGGAAGAAAATGTGAGATTA</canonical_amplicon>
		<polymorphic_amplicon>CAATCCAATGTTTTTCCTGTATTTTTAGCATTCGGAAACCCGAAAATTGCCGGAAAAAAAATCGCAGATTTTCCGCGCGGCAGTCTTGCTCGCCAACTTCGCCCCGCCCACTTTTCCGCGGCGCGCGCATTTTTTGCGAGACCGTACAAATCGGAAGGATTTCTCGACCGGAGGAAAACGAAACGGGAGGAAACGAATCGGAAGAAAACGAAAGCGAAGGAAACGAAACGGGAGGAACGGAAGCGTGCAGCATTTTTGCAAAAAAAAGCATGCGGAAGGTTGCGAAAGGGCGGGGTCTCGCTCAGAAAGTTCAGAAAAACACGAAAGGACTCTCTTGCCCCGCCTTTAAAATCCTGCCCGCTTCCGTTCCTCCCGTTTCGTTTTCTCCCGTTTCGTTTTCCTCCGGCCGAGAAATCCTCCCGATTTGTACGGTCTCTTTTTTGCGGGGAAAATGTAGGGAAGTGAGCRAAAAAAAACTGTAACTCGGAAATAAATGCATATTTTTGGAAGAAAATGTGAGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37581</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>436037</contig_pos>
        <strand>+</strand>
        <context>GAGACGGCGG[C/T]TTTTTAATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATATCGAACTTATCACATTTACACATTGAATCAAAAACTTGAGACGGCGG</left_flank>
        <right_flank>TTTTTAATTCAATTTTTCATTTTTTTTTGCGGAAACTTGCTTAATGGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAGTCCGCGACGACAAAAATTTCCCTGTTCCTTTATTTTTTGGCTGTAAGAGCTCTCACTTCGAATTTTCGTCGTGTTTTGTTTATATGTCGAAATCACGTCTTCACAATTCATTTTTGTGTCTAGAAAATAGAGAAAAAGGAGCTTTTTTATTGACATTGAGGTTTTGTTTTTCAGCTTTCTAGGTGCGACACCCTAAACGGTTATTATTTCAGAAAAAAAAGAAGCTGAAAATATTTTGCAGAGTAATAAAAAATGTGTTTTTCAGGAATCTATGAGCACTTTTGCACGCTAGCCAAATACTCGAGATCTGAAAAAGTAGGAAATTTTCTAGGTCACTGAAAGTCTTCGATTTTTAATCTTCGCACCCCTACCTTCACAATCATTTTTTTCCGTTTGAACAGAATCGTGAATTCATCATCATATTCTTTTTTCTTCGCTAATCCCATATCGAACTTATCACATTTACACATTGAATCAAAAACTTGAGACGGCGGATTTTTAATTCAATTTTTCATTTTTTTTTGCGGAAACTTGCTTAATGGAATACTTTTTTTAAAATTTGTTTAAGAGACATACGATTTTTTTTTCGTTGATCAGGACTTGAAAAACTGTAATTTAGCTACCGTATTCCAATAGAAGCCCACCCAGTACTCGAACTTTGTTCAATTATCTCGATTCCCTCAAAAGATGCCAAAAAAGTGTCAACTGATAAAATATTGGTGATATTATGATAAACATATTAGCAGTTGACTACATTTTAATATCTTTTGAAGGAACCAATATAATCGTGCTCATAGTTGATGTTTATGGCGTGGGCTTCTATTAGAGAGAATGTGATAATTTACCGTAAACACTAATGGAACGCCACCCGAACCGTCAACGTTGAGCCCCTATATCTCATTCACTATAGAAGATATCAAAAAGTGTTTAACTATTAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAACTTTTTTATATCTTTC</canonical>
            <polymorphic>GAGAGTCCGCGACGACAAAAATTTCCCTGTTCCTTTATTTTTTGGCTGTAAGAGCTCTCACTTCGAATTTTCGTCGTGTTTTGTTTATATGTCGAAATCACGTCTTCACAATTCATTTTTGTGTCTAGAAAATAGAGAAAAAGGAGCTTTTTTATTGACATTGAGGTTTTGTTTTTCAGCTTTCTAGGTGCGACACCCTAAACGGTTATTATTTCAGAAAAAAAAGAAGCTGAAAATATTTTGCAGAGTAATAAAAAATGTGTTTTTCAGGAATCTATGAGCACTTTTGCACGCTAGCCAAATACTCGAGATCTGAAAAAGTAGGAAATTTTCTAGGTCACTGAAAGTCTTCGATTTTTAATCTTCGCACCCCTACCTTCACAATCATTTTTTTCCGTTTGAACAGAATCGTGAATTCATCATCATATTCTTTTTTCTTCGCTAATCCCATATCGAACTTATCACATTTACACATTGAATCAAAAACTTGAGACGGCGGYTTTTTAATTCAATTTTTCATTTTTTTTTGCGGAAACTTGCTTAATGGAATACTTTTTTTAAAATTTGTTTAAGAGACATACGATTTTTTTTTCGTTGATCAGGACTTGAAAAACTGTAATTTAGCTACCGTATTCCAATAGAAGCCCACCCAGTACTCGAACTTTGTTCAATTATCTCGATTCCCTCAAAAGATGCCAAAAAAGTGTCAACTGATAAAATATTGGTGATATTATGATAAACATATTAGCAGTTGACTACATTTTAATATCTTTTGAAGGAACCAATATAATCGTGCTCATAGTTGATGTTTATGGCGTGGGCTTCTATTAGAGAGAATGTGATAATTTACCGTAAACACTAATGGAACGCCACCCGAACCGTCAACGTTGAGCCCCTATATCTCATTCACTATAGAAGATATCAAAAAGTGTTTAACTATTAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAACTTTTTTATATCTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGTCTTCGATTTTTAATCTTC</pcr_primer_p1>
		<pcr_primer_p2>AAGTCCTGATCAACGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>GAAAGTCTTCGATTTTTAATCTTCGCACCCCTACCTTCACAATCATTTTTTTCCGTTTGAACAGAATCGTGAATTCATCATCATATTCTTTTTTCTTCGCTAATCCCATATCGAACTTATCACATTTACACATTGAATCAAAAACTTGAGACGGCGGATTTTTAATTCAATTTTTCATTTTTTTTTGCGGAAACTTGCTTAATGGAATACTTTTTTTAAAATTTGTTTAAGAGACATACGATTTTTTTTTCGTTGATCAGGACTT</canonical_amplicon>
		<polymorphic_amplicon>GAAAGTCTTCGATTTTTAATCTTCGCACCCCTACCTTCACAATCATTTTTTTCCGTTTGAACAGAATCGTGAATTCATCATCATATTCTTTTTTCTTCGCTAATCCCATATCGAACTTATCACATTTACACATTGAATCAAAAACTTGAGACGGCGGYTTTTTAATTCAATTTTTCATTTTTTTTTGCGGAAACTTGCTTAATGGAATACTTTTTTTAAAATTTGTTTAAGAGACATACGATTTTTTTTTCGTTGATCAGGACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37582</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>436121</contig_pos>
        <strand>+</strand>
        <context>AGACATACGA[A/G]TTTTTTTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACTTGCTTAATGGAATACTTTTTTTAAAATTTGTTTAAGAGACATACGA</left_flank>
        <right_flank>TTTTTTTTCGTTGATCAGGACTTGAAAAACTGTAATTTAGCTACCGTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATATGTCGAAATCACGTCTTCACAATTCATTTTTGTGTCTAGAAAATAGAGAAAAAGGAGCTTTTTTATTGACATTGAGGTTTTGTTTTTCAGCTTTCTAGGTGCGACACCCTAAACGGTTATTATTTCAGAAAAAAAAGAAGCTGAAAATATTTTGCAGAGTAATAAAAAATGTGTTTTTCAGGAATCTATGAGCACTTTTGCACGCTAGCCAAATACTCGAGATCTGAAAAAGTAGGAAATTTTCTAGGTCACTGAAAGTCTTCGATTTTTAATCTTCGCACCCCTACCTTCACAATCATTTTTTTCCGTTTGAACAGAATCGTGAATTCATCATCATATTCTTTTTTCTTCGCTAATCCCATATCGAACTTATCACATTTACACATTGAATCAAAAACTTGAGACGGCGGATTTTTAATTCAATTTTTCATTTTTTTTTGCGGAAACTTGCTTAATGGAATACTTTTTTTAAAATTTGTTTAAGAGACATACGATTTTTTTTTCGTTGATCAGGACTTGAAAAACTGTAATTTAGCTACCGTATTCCAATAGAAGCCCACCCAGTACTCGAACTTTGTTCAATTATCTCGATTCCCTCAAAAGATGCCAAAAAAGTGTCAACTGATAAAATATTGGTGATATTATGATAAACATATTAGCAGTTGACTACATTTTAATATCTTTTGAAGGAACCAATATAATCGTGCTCATAGTTGATGTTTATGGCGTGGGCTTCTATTAGAGAGAATGTGATAATTTACCGTAAACACTAATGGAACGCCACCCGAACCGTCAACGTTGAGCCCCTATATCTCATTCACTATAGAAGATATCAAAAAGTGTTTAACTATTAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAACTTTTTTATATCTTTCAAAAGAAGTGAGATATACAGGATCAAAGTTGACTGTCCGGGTGGAATTCTATTAGAGTGTTTACGGTATTTAGTAGATTTAAAA</canonical>
            <polymorphic>TTATATGTCGAAATCACGTCTTCACAATTCATTTTTGTGTCTAGAAAATAGAGAAAAAGGAGCTTTTTTATTGACATTGAGGTTTTGTTTTTCAGCTTTCTAGGTGCGACACCCTAAACGGTTATTATTTCAGAAAAAAAAGAAGCTGAAAATATTTTGCAGAGTAATAAAAAATGTGTTTTTCAGGAATCTATGAGCACTTTTGCACGCTAGCCAAATACTCGAGATCTGAAAAAGTAGGAAATTTTCTAGGTCACTGAAAGTCTTCGATTTTTAATCTTCGCACCCCTACCTTCACAATCATTTTTTTCCGTTTGAACAGAATCGTGAATTCATCATCATATTCTTTTTTCTTCGCTAATCCCATATCGAACTTATCACATTTACACATTGAATCAAAAACTTGAGACGGCGGATTTTTAATTCAATTTTTCATTTTTTTTTGCGGAAACTTGCTTAATGGAATACTTTTTTTAAAATTTGTTTAAGAGACATACGARTTTTTTTTCGTTGATCAGGACTTGAAAAACTGTAATTTAGCTACCGTATTCCAATAGAAGCCCACCCAGTACTCGAACTTTGTTCAATTATCTCGATTCCCTCAAAAGATGCCAAAAAAGTGTCAACTGATAAAATATTGGTGATATTATGATAAACATATTAGCAGTTGACTACATTTTAATATCTTTTGAAGGAACCAATATAATCGTGCTCATAGTTGATGTTTATGGCGTGGGCTTCTATTAGAGAGAATGTGATAATTTACCGTAAACACTAATGGAACGCCACCCGAACCGTCAACGTTGAGCCCCTATATCTCATTCACTATAGAAGATATCAAAAAGTGTTTAACTATTAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAACTTTTTTATATCTTTCAAAAGAAGTGAGATATACAGGATCAAAGTTGACTGTCCGGGTGGAATTCTATTAGAGTGTTTACGGTATTTAGTAGATTTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATTGAATCAAAAACTTGAGAC</pcr_primer_p1>
		<pcr_primer_p2>TATCGATGTTGAGCATAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>635</pcr_amplicon_size>
		<canonical_amplicon>ACATTGAATCAAAAACTTGAGACGGCGGATTTTTAATTCAATTTTTCATTTTTTTTTGCGGAAACTTGCTTAATGGAATACTTTTTTTAAAATTTGTTTAAGAGACATACGATTTTTTTTTCGTTGATCAGGACT</canonical_amplicon>
		<polymorphic_amplicon>ACATTGAATCAAAAACTTGAGACGGCGGATTTTTAATTCAATTTTTCATTTTTTTTTGCGGAAACTTGCTTAATGGAATACTTTTTTTAAAATTTGTTTAAGAGACATACGARTTTTTTTTCGTTGATCAGGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37583</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>436195</contig_pos>
        <strand></strand>
        <context>acccagtact[C/T]gaactttgyt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAAACTGTAATTTAGCTACCGTATTCCAATAGAAGCCCACCCAGTACT</left_flank>
        <right_flank>GAACTTTGTTCAATTATCTCGATTCCCTCAAAAGATGCCAAAAAAGTGTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTGAGGTTTTGTTTTTCAGCTTTCTAGGTGCGACACCCTAAACGGTTATTATTTCAGAAAAAAAAGAAGCTGAAAATATTTTGCAGAGTAATAAAAAATGTGTTTTTCAGGAATCTATGAGCACTTTTGCACGCTAGCCAAATACTCGAGATCTGAAAAAGTAGGAAATTTTCTAGGTCACTGAAAGTCTTCGATTTTTAATCTTCGCACCCCTACCTTCACAATCATTTTTTTCCGTTTGAACAGAATCGTGAATTCATCATCATATTCTTTTTTCTTCGCTAATCCCATATCGAACTTATCACATTTACACATTGAATCAAAAACTTGAGACGGCGGATTTTTAATTCAATTTTTCATTTTTTTTTGCGGAAACTTGCTTAATGGAATACTTTTTTTAAAATTTGTTTAAGAGACATACGATTTTTTTTTCGTTGATCAGGACTTGAAAAACTGTAATTTAGCTACCGTATTCCAATAGAAGCCCACCCAGTACTCGAACTTTGTTCAATTATCTCGATTCCCTCAAAAGATGCCAAAAAAGTGTCAACTGATAAAATATTGGTGATATTATGATAAACATATTAGCAGTTGACTACATTTTAATATCTTTTGAAGGAACCAATATAATCGTGCTCATAGTTGATGTTTATGGCGTGGGCTTCTATTAGAGAGAATGTGATAATTTACCGTAAACACTAATGGAACGCCACCCGAACCGTCAACGTTGAGCCCCTATATCTCATTCACTATAGAAGATATCAAAAAGTGTTTAACTATTAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAACTTTTTTATATCTTTCAAAAGAAGTGAGATATACAGGATCAAAGTTGACTGTCCGGGTGGAATTCTATTAGAGTGTTTACGGTATTTAGTAGATTTAAAAAAAATTATGCTCAACATCGATAATCAAAAACATTTATCCCATTTTTCAAAAATTTCAGAAAATTGTCAACAAAA</canonical>
            <polymorphic>CATTGAGGTTTTGTTTTTCAGCTTTCTAGGTGCGACACCCTAAACGGTTATTATTTCAGAAAAAAAAGAAGCTGAAAATATTTTGCAGAGTAATAAAAAATGTGTTTTTCAGGAATCTATGAGCACTTTTGCACGCTAGCCAAATACTCGAGATCTGAAAAAGTAGGAAATTTTCTAGGTCACTGAAAGTCTTCGATTTTTAATCTTCGCACCCCTACCTTCACAATCATTTTTTTCCGTTTGAACAGAATCGTGAATTCATCATCATATTCTTTTTTCTTCGCTAATCCCATATCGAACTTATCACATTTACACATTGAATCAAAAACTTGAGACGGCGGATTTTTAATTCAATTTTTCATTTTTTTTTGCGGAAACTTGCTTAATGGAATACTTTTTTTAAAATTTGTTTAAGAGACATACGATTTTTTTTTCGTTGATCAGGACTTGAAAAACTGTAATTTAGCTACCGTATTCCAATAGAAGCCCACCCAGTACTYGAACTTTGTTCAATTATCTCGATTCCCTCAAAAGATGCCAAAAAAGTGTCAACTGATAAAATATTGGTGATATTATGATAAACATATTAGCAGTTGACTACATTTTAATATCTTTTGAAGGAACCAATATAATCGTGCTCATAGTTGATGTTTATGGCGTGGGCTTCTATTAGAGAGAATGTGATAATTTACCGTAAACACTAATGGAACGCCACCCGAACCGTCAACGTTGAGCCCCTATATCTCATTCACTATAGAAGATATCAAAAAGTGTTTAACTATTAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAACTTTTTTATATCTTTCAAAAGAAGTGAGATATACAGGATCAAAGTTGACTGTCCGGGTGGAATTCTATTAGAGTGTTTACGGTATTTAGTAGATTTAAAAAAAATTATGCTCAACATCGATAATCAAAAACATTTATCCCATTTTTCAAAAATTTCAGAAAATTGTCAACAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>424 204 149 102 56 45 20</canonical_bands>
                <polymorphic_bands>424 224 149 102 56 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTTGATCAGGACTTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTATCGATGTTGAGCATAATTT</pcr_primer_p2>
		<pcr_amplicon_size>516</pcr_amplicon_size>
		<canonical_amplicon>CGTTGATCAGGACTTGAAAAACTGTAATTTAGCTACCGTATTCCAATAGAAGCCCACCCAGTACTCGAACTTTGTTCAATTATCTCGATTCCCTCAAAAGATGCCAAAAAAGTGTCAACTGATAAAATATTGGTGATATTATGATAAACATATTAGCAGTTGACTACATTTTAATATCTTTTGAAGGAACCAATATAATCGTGCTCATAGTTGATGTTTATGGCGTGGGCTTCTATTAGAGAGAATGTGATAATTTACCGTAAACACTAATGGAACGCCACCCGAACCGTCAACGTTGAGCCCCTATATCTCATTCACTATAGAAGATATCAAAAAGTGTTTAACTATTAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAACTTTTTTATATCTTTCAAAAGAAGTGAGATATACAGGATCAAAGTTGACTGTCCGGGTGGAATTCTATTAGAGTGTTTACGGTATTTAGTAGATTTAAAAAAAATTATGCTCAACATCGATAAT</canonical_amplicon>
		<polymorphic_amplicon>CGTTGATCAGGACTTGAAAAACTGTAATTTAGCTACCGTATTCCAATAGAAGCCCACCCAGTACTYGAACTTTGTTCAATTATCTCGATTCCCTCAAAAGATGCCAAAAAAGTGTCAACTGATAAAATATTGGTGATATTATGATAAACATATTAGCAGTTGACTACATTTTAATATCTTTTGAAGGAACCAATATAATCGTGCTCATAGTTGATGTTTATGGCGTGGGCTTCTATTAGAGAGAATGTGATAATTTACCGTAAACACTAATGGAACGCCACCCGAACCGTCAACGTTGAGCCCCTATATCTCATTCACTATAGAAGATATCAAAAAGTGTTTAACTATTAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAACTTTTTTATATCTTTCAAAAGAAGTGAGATATACAGGATCAAAGTTGACTGTCCGGGTGGAATTCTATTAGAGTGTTTACGGTATTTAGTAGATTTAAAAAAAATTATGCTCAACATCGATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37584</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>436204</contig_pos>
        <strand></strand>
        <context>tygaactttg[T/C]tcaattatct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAATTTAGCTACCGTATTCCAATAGAAGCCCACCCAGTACTCGAACTTTG</left_flank>
        <right_flank>TCAATTATCTCGATTCCCTCAAAAGATGCCAAAAAAGTGTCAACTGATAA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGTTTTTCAGCTTTCTAGGTGCGACACCCTAAACGGTTATTATTTCAGAAAAAAAAGAAGCTGAAAATATTTTGCAGAGTAATAAAAAATGTGTTTTTCAGGAATCTATGAGCACTTTTGCACGCTAGCCAAATACTCGAGATCTGAAAAAGTAGGAAATTTTCTAGGTCACTGAAAGTCTTCGATTTTTAATCTTCGCACCCCTACCTTCACAATCATTTTTTTCCGTTTGAACAGAATCGTGAATTCATCATCATATTCTTTTTTCTTCGCTAATCCCATATCGAACTTATCACATTTACACATTGAATCAAAAACTTGAGACGGCGGATTTTTAATTCAATTTTTCATTTTTTTTTGCGGAAACTTGCTTAATGGAATACTTTTTTTAAAATTTGTTTAAGAGACATACGATTTTTTTTTCGTTGATCAGGACTTGAAAAACTGTAATTTAGCTACCGTATTCCAATAGAAGCCCACCCAGTACTCGAACTTTGTTCAATTATCTCGATTCCCTCAAAAGATGCCAAAAAAGTGTCAACTGATAAAATATTGGTGATATTATGATAAACATATTAGCAGTTGACTACATTTTAATATCTTTTGAAGGAACCAATATAATCGTGCTCATAGTTGATGTTTATGGCGTGGGCTTCTATTAGAGAGAATGTGATAATTTACCGTAAACACTAATGGAACGCCACCCGAACCGTCAACGTTGAGCCCCTATATCTCATTCACTATAGAAGATATCAAAAAGTGTTTAACTATTAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAACTTTTTTATATCTTTCAAAAGAAGTGAGATATACAGGATCAAAGTTGACTGTCCGGGTGGAATTCTATTAGAGTGTTTACGGTATTTAGTAGATTTAAAAAAAATTATGCTCAACATCGATAATCAAAAACATTTATCCCATTTTTCAAAAATTTCAGAAAATTGTCAACAAAAATTGATATT</canonical>
            <polymorphic>TTTGTTTTTCAGCTTTCTAGGTGCGACACCCTAAACGGTTATTATTTCAGAAAAAAAAGAAGCTGAAAATATTTTGCAGAGTAATAAAAAATGTGTTTTTCAGGAATCTATGAGCACTTTTGCACGCTAGCCAAATACTCGAGATCTGAAAAAGTAGGAAATTTTCTAGGTCACTGAAAGTCTTCGATTTTTAATCTTCGCACCCCTACCTTCACAATCATTTTTTTCCGTTTGAACAGAATCGTGAATTCATCATCATATTCTTTTTTCTTCGCTAATCCCATATCGAACTTATCACATTTACACATTGAATCAAAAACTTGAGACGGCGGATTTTTAATTCAATTTTTCATTTTTTTTTGCGGAAACTTGCTTAATGGAATACTTTTTTTAAAATTTGTTTAAGAGACATACGATTTTTTTTTCGTTGATCAGGACTTGAAAAACTGTAATTTAGCTACCGTATTCCAATAGAAGCCCACCCAGTACTCGAACTTTGYTCAATTATCTCGATTCCCTCAAAAGATGCCAAAAAAGTGTCAACTGATAAAATATTGGTGATATTATGATAAACATATTAGCAGTTGACTACATTTTAATATCTTTTGAAGGAACCAATATAATCGTGCTCATAGTTGATGTTTATGGCGTGGGCTTCTATTAGAGAGAATGTGATAATTTACCGTAAACACTAATGGAACGCCACCCGAACCGTCAACGTTGAGCCCCTATATCTCATTCACTATAGAAGATATCAAAAAGTGTTTAACTATTAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAACTTTTTTATATCTTTCAAAAGAAGTGAGATATACAGGATCAAAGTTGACTGTCCGGGTGGAATTCTATTAGAGTGTTTACGGTATTTAGTAGATTTAAAAAAAATTATGCTCAACATCGATAATCAAAAACATTTATCCCATTTTTCAAAAATTTCAGAAAATTGTCAACAAAAATTGATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTGATCAGGACTTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTATCGATGTTGAGCATAATTT</pcr_primer_p2>
		<pcr_amplicon_size>516</pcr_amplicon_size>
		<canonical_amplicon>CGTTGATCAGGACTTGAAAAACTGTAATTTAGCTACCGTATTCCAATAGAAGCCCACCCAGTACTCGAACTTTGTTCAATTATCTCGATTCCCTCAAAAGATGCCAAAAAAGTGTCAACTGATAAAATATTGGTGATATTATGATAAACATATTAGCAGTTGACTACATTTTAATATCTTTTGAAGGAACCAATATAATCGTGCTCATAGTTGATGTTTATGGCGTGGGCTTCTATTAGAGAGAATGTGATAATTTACCGTAAACACTAATGGAACGCCACCCGAACCGTCAACGTTGAGCCCCTATATCTCATTCACTATAGAAGATATCAAAAAGTGTTTAACTATTAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAACTTTTTTATATCTTTCAAAAGAAGTGAGATATACAGGATCAAAGTTGACTGTCCGGGTGGAATTCTATTAGAGTGTTTACGGTATTTAGTAGATTTAAAAAAAATTATGCTCAACATCGATAAT</canonical_amplicon>
		<polymorphic_amplicon>CGTTGATCAGGACTTGAAAAACTGTAATTTAGCTACCGTATTCCAATAGAAGCCCACCCAGTACTCGAACTTTGYTCAATTATCTCGATTCCCTCAAAAGATGCCAAAAAAGTGTCAACTGATAAAATATTGGTGATATTATGATAAACATATTAGCAGTTGACTACATTTTAATATCTTTTGAAGGAACCAATATAATCGTGCTCATAGTTGATGTTTATGGCGTGGGCTTCTATTAGAGAGAATGTGATAATTTACCGTAAACACTAATGGAACGCCACCCGAACCGTCAACGTTGAGCCCCTATATCTCATTCACTATAGAAGATATCAAAAAGTGTTTAACTATTAAAATGTTGCTGATATCATGATAAACATTTTATTAGTTGACAACTTTTTTATATCTTTCAAAAGAAGTGAGATATACAGGATCAAAGTTGACTGTCCGGGTGGAATTCTATTAGAGTGTTTACGGTATTTAGTAGATTTAAAAAAAATTATGCTCAACATCGATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37585</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>439086</contig_pos>
        <strand>+</strand>
        <context>TCATATTACC[A/C]TTTTTTTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCGACCCAGCTCAGTTTTTAAGAAATTCTCGCTATCACCTTCATATTACC</left_flank>
        <right_flank>TTTTTTTCCATCATGAATTTTTCCGAATCCTTTAGTGTAAAATTGGGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCGTTCGTATATCTGACTATTGACTAGTATTGAAACTGATTTGATAGTTCTGTGATCATTGAGATATTCATGTTCTATCAAGTGTGAGATCAGATTGAACTTTGTGTAGGAAAATGTAGATTTTGTTGCCAAATGACCTTTTAGATTAGGACACCTTTTAGTGGTGAGAATTCAATGATTTTCGATGATGAATGATTAGAAGTGCAAGGTCAGTGGTACGGTATTTGTATGATGCGGAAGTGTAAGATGCGCAACTATTTTTTACCTTTGAGCTAATTTATCTCGGTACTTTTTGAATGTACAAAAAATTTGTCAATTTTTAAATTGTTTATCATAATTTACCAGGATTTTATCAGTTGGCAAATTTTTGATATCTTACATAGAAGCCAAGAAAAATCGAACTAGTAAGGGCCCTCCTATTACAGGTTTCACGGTATTTTCCATTTTTCCGACCCAGCTCAGTTTTTAAGAAATTCTCGCTATCACCTTCATATTACCTTTTTTTTCCATCATGAATTTTTCCGAATCCTTTAGTGTAAAATTGGGGAATTCTCGTTTTTTATCATTCAAGGTTTTTTTTATGTTTCCATTACTTCGCAATTTCCAGATTTTTAGCTTATCATGTTTTGTTATCAGCTATTCCCAGATTTTTTTTAGCTTCACGAATTTCAGAAGTTTCAAGTCATTCCCCAAAAAAAAACAATCGTCCGAGAAAATTGTGATTTTTGGAAACTCCGAGAAATCTGACATATAACTTTTCTGGAAATCCGAAATTTTTAATAAACTACAGTAATTCAATTTTTCACTTTTATCCAATTATATTTTTATCTAGTTCAAAAAAAAGTTATCTTGCTTTATATAGGGTGATCTTCCTCATACAAGATATACTTTTGAGATGGAATAGTATGGATTTTTGAATTCTTTAAAAGTGACATCTGAAAATTTACAATCTTTCTTTTTGTCACCTAGATTTTTTTTTTGCCAAAACATCATTTTCAG</canonical>
            <polymorphic>TCCGTTCGTATATCTGACTATTGACTAGTATTGAAACTGATTTGATAGTTCTGTGATCATTGAGATATTCATGTTCTATCAAGTGTGAGATCAGATTGAACTTTGTGTAGGAAAATGTAGATTTTGTTGCCAAATGACCTTTTAGATTAGGACACCTTTTAGTGGTGAGAATTCAATGATTTTCGATGATGAATGATTAGAAGTGCAAGGTCAGTGGTACGGTATTTGTATGATGCGGAAGTGTAAGATGCGCAACTATTTTTTACCTTTGAGCTAATTTATCTCGGTACTTTTTGAATGTACAAAAAATTTGTCAATTTTTAAATTGTTTATCATAATTTACCAGGATTTTATCAGTTGGCAAATTTTTGATATCTTACATAGAAGCCAAGAAAAATCGAACTAGTAAGGGCCCTCCTATTACAGGTTTCACGGTATTTTCCATTTTTCCGACCCAGCTCAGTTTTTAAGAAATTCTCGCTATCACCTTCATATTACCMTTTTTTTCCATCATGAATTTTTCCGAATCCTTTAGTGTAAAATTGGGGAATTCTCGTTTTTTATCATTCAAGGTTTTTTTTATGTTTCCATTACTTCGCAATTTCCAGATTTTTAGCTTATCATGTTTTGTTATCAGCTATTCCCAGATTTTTTTTAGCTTCACGAATTTCAGAAGTTTCAAGTCATTCCCCAAAAAAAAACAATCGTCCGAGAAAATTGTGATTTTTGGAAACTCCGAGAAATCTGACATATAACTTTTCTGGAAATCCGAAATTTTTAATAAACTACAGTAATTCAATTTTTCACTTTTATCCAATTATATTTTTATCTAGTTCAAAAAAAAGTTATCTTGCTTTATATAGGGTGATCTTCCTCATACAAGATATACTTTTGAGATGGAATAGTATGGATTTTTGAATTCTTTAAAAGTGACATCTGAAAATTTACAATCTTTCTTTTTGTCACCTAGATTTTTTTTTTGCCAAAACATCATTTTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGTATGATGCGGAAGTG</pcr_primer_p1>
		<pcr_primer_p2>GAATTCCCCAATTTTACACTAA</pcr_primer_p2>
		<pcr_amplicon_size>330</pcr_amplicon_size>
		<canonical_amplicon>ATTTGTATGATGCGGAAGTGTAAGATGCGCAACTATTTTTTACCTTTGAGCTAATTTATCTCGGTACTTTTTGAATGTACAAAAAATTTGTCAATTTTTAAATTGTTTATCATAATTTACCAGGATTTTATCAGTTGGCAAATTTTTGATATCTTACATAGAAGCCAAGAAAAATCGAACTAGTAAGGGCCCTCCTATTACAGGTTTCACGGTATTTTCCATTTTTCCGACCCAGCTCAGTTTTTAAGAAATTCTCGCTATCACCTTCATATTACCTTTTTTTTCCATCATGAATTTTTCCGAATCCTTTAGTGTAAAATTGGGGAATTC</canonical_amplicon>
		<polymorphic_amplicon>ATTTGTATGATGCGGAAGTGTAAGATGCGCAACTATTTTTTACCTTTGAGCTAATTTATCTCGGTACTTTTTGAATGTACAAAAAATTTGTCAATTTTTAAATTGTTTATCATAATTTACCAGGATTTTATCAGTTGGCAAATTTTTGATATCTTACATAGAAGCCAAGAAAAATCGAACTAGTAAGGGCCCTCCTATTACAGGTTTCACGGTATTTTCCATTTTTCCGACCCAGCTCAGTTTTTAAGAAATTCTCGCTATCACCTTCATATTACCMTTTTTTTCCATCATGAATTTTTCCGAATCCTTTAGTGTAAAATTGGGGAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37586</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>439279</contig_pos>
        <strand>+</strand>
        <context>GTCATTCCCC[A/C]AAAAAAAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCCAGATTTTTTTTAGCTTCACGAATTTCAGAAGTTTCAAGTCATTCCCC</left_flank>
        <right_flank>AAAAAAAACAATCGTCCGAGAAAATTGTGATTTTTGGAAACTCCGAGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATTAGAAGTGCAAGGTCAGTGGTACGGTATTTGTATGATGCGGAAGTGTAAGATGCGCAACTATTTTTTACCTTTGAGCTAATTTATCTCGGTACTTTTTGAATGTACAAAAAATTTGTCAATTTTTAAATTGTTTATCATAATTTACCAGGATTTTATCAGTTGGCAAATTTTTGATATCTTACATAGAAGCCAAGAAAAATCGAACTAGTAAGGGCCCTCCTATTACAGGTTTCACGGTATTTTCCATTTTTCCGACCCAGCTCAGTTTTTAAGAAATTCTCGCTATCACCTTCATATTACCTTTTTTTTCCATCATGAATTTTTCCGAATCCTTTAGTGTAAAATTGGGGAATTCTCGTTTTTTATCATTCAAGGTTTTTTTTATGTTTCCATTACTTCGCAATTTCCAGATTTTTAGCTTATCATGTTTTGTTATCAGCTATTCCCAGATTTTTTTTAGCTTCACGAATTTCAGAAGTTTCAAGTCATTCCCCAAAAAAAAACAATCGTCCGAGAAAATTGTGATTTTTGGAAACTCCGAGAAATCTGACATATAACTTTTCTGGAAATCCGAAATTTTTAATAAACTACAGTAATTCAATTTTTCACTTTTATCCAATTATATTTTTATCTAGTTCAAAAAAAAGTTATCTTGCTTTATATAGGGTGATCTTCCTCATACAAGATATACTTTTGAGATGGAATAGTATGGATTTTTGAATTCTTTAAAAGTGACATCTGAAAATTTACAATCTTTCTTTTTGTCACCTAGATTTTTTTTTTGCCAAAACATCATTTTCAGCCCAGTACTGTAGATCGTACCATTTTCCGAACCCCTCTAAACCAATAAACATCTAAAATTCCAAATTTTTGCAGGCTCTGGAATTGGCTCGATCGGCCTACCAATTCTTGGCGGTCGAGGGCGTGGAGTCATGTCTGATAGTCATATGCAACGAACATTTAACGAAGCAATGAGGCAGAGGAGGACCAGTTTA</canonical>
            <polymorphic>TGATTAGAAGTGCAAGGTCAGTGGTACGGTATTTGTATGATGCGGAAGTGTAAGATGCGCAACTATTTTTTACCTTTGAGCTAATTTATCTCGGTACTTTTTGAATGTACAAAAAATTTGTCAATTTTTAAATTGTTTATCATAATTTACCAGGATTTTATCAGTTGGCAAATTTTTGATATCTTACATAGAAGCCAAGAAAAATCGAACTAGTAAGGGCCCTCCTATTACAGGTTTCACGGTATTTTCCATTTTTCCGACCCAGCTCAGTTTTTAAGAAATTCTCGCTATCACCTTCATATTACCTTTTTTTTCCATCATGAATTTTTCCGAATCCTTTAGTGTAAAATTGGGGAATTCTCGTTTTTTATCATTCAAGGTTTTTTTTATGTTTCCATTACTTCGCAATTTCCAGATTTTTAGCTTATCATGTTTTGTTATCAGCTATTCCCAGATTTTTTTTAGCTTCACGAATTTCAGAAGTTTCAAGTCATTCCCCMAAAAAAAACAATCGTCCGAGAAAATTGTGATTTTTGGAAACTCCGAGAAATCTGACATATAACTTTTCTGGAAATCCGAAATTTTTAATAAACTACAGTAATTCAATTTTTCACTTTTATCCAATTATATTTTTATCTAGTTCAAAAAAAAGTTATCTTGCTTTATATAGGGTGATCTTCCTCATACAAGATATACTTTTGAGATGGAATAGTATGGATTTTTGAATTCTTTAAAAGTGACATCTGAAAATTTACAATCTTTCTTTTTGTCACCTAGATTTTTTTTTTGCCAAAACATCATTTTCAGCCCAGTACTGTAGATCGTACCATTTTCCGAACCCCTCTAAACCAATAAACATCTAAAATTCCAAATTTTTGCAGGCTCTGGAATTGGCTCGATCGGCCTACCAATTCTTGGCGGTCGAGGGCGTGGAGTCATGTCTGATAGTCATATGCAACGAACATTTAACGAAGCAATGAGGCAGAGGAGGACCAGTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCCATCATGAATTTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATATGTCAGATTTCTCGGAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCCATCATGAATTTTTCCGAATCCTTTAGTGTAAAATTGGGGAATTCTCGTTTTTTATCATTCAAGGTTTTTTTTATGTTTCCATTACTTCGCAATTTCCAGATTTTTAGCTTATCATGTTTTGTTATCAGCTATTCCCAGATTTTTTTTAGCTTCACGAATTTCAGAAGTTTCAAGTCATTCCCCAAAAAAAAACAATCGTCCGAGAAAATTGTGATTTTTGGAAACTCCGAGAAATCTGACATAT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCCATCATGAATTTTTCCGAATCCTTTAGTGTAAAATTGGGGAATTCTCGTTTTTTATCATTCAAGGTTTTTTTTATGTTTCCATTACTTCGCAATTTCCAGATTTTTAGCTTATCATGTTTTGTTATCAGCTATTCCCAGATTTTTTTTAGCTTCACGAATTTCAGAAGTTTCAAGTCATTCCCCMAAAAAAAACAATCGTCCGAGAAAATTGTGATTTTTGGAAACTCCGAGAAATCTGACATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37587</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>439423</contig_pos>
        <strand>+</strand>
        <context>TATCTAGTTC[A/C]AAAAAAAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TACAGTAATTCAATTTTTCACTTTTATCCAATTATATTTTTATCTAGTTC</left_flank>
        <right_flank>AAAAAAAGTTATCTTGCTTTATATAGGGTGATCTTCCTCATACAAGATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTACCAGGATTTTATCAGTTGGCAAATTTTTGATATCTTACATAGAAGCCAAGAAAAATCGAACTAGTAAGGGCCCTCCTATTACAGGTTTCACGGTATTTTCCATTTTTCCGACCCAGCTCAGTTTTTAAGAAATTCTCGCTATCACCTTCATATTACCTTTTTTTTCCATCATGAATTTTTCCGAATCCTTTAGTGTAAAATTGGGGAATTCTCGTTTTTTATCATTCAAGGTTTTTTTTATGTTTCCATTACTTCGCAATTTCCAGATTTTTAGCTTATCATGTTTTGTTATCAGCTATTCCCAGATTTTTTTTAGCTTCACGAATTTCAGAAGTTTCAAGTCATTCCCCAAAAAAAAACAATCGTCCGAGAAAATTGTGATTTTTGGAAACTCCGAGAAATCTGACATATAACTTTTCTGGAAATCCGAAATTTTTAATAAACTACAGTAATTCAATTTTTCACTTTTATCCAATTATATTTTTATCTAGTTCAAAAAAAAGTTATCTTGCTTTATATAGGGTGATCTTCCTCATACAAGATATACTTTTGAGATGGAATAGTATGGATTTTTGAATTCTTTAAAAGTGACATCTGAAAATTTACAATCTTTCTTTTTGTCACCTAGATTTTTTTTTTGCCAAAACATCATTTTCAGCCCAGTACTGTAGATCGTACCATTTTCCGAACCCCTCTAAACCAATAAACATCTAAAATTCCAAATTTTTGCAGGCTCTGGAATTGGCTCGATCGGCCTACCAATTCTTGGCGGTCGAGGGCGTGGAGTCATGTCTGATAGTCATATGCAACGAACATTTAACGAAGCAATGAGGCAGAGGAGGACCAGTTTACCAGCAAATAGTTTATCGCTGAATGGAACCAAAAGTTTGGTGAGTTCAAAAAAGTCCGAAGATGCCTAGCTAGATATCTGCACTGCAATATTTTCCTTATCATCATTATCACTTCTTCTGAGAAAAAGATCAAAAACCTCTGAA</canonical>
            <polymorphic>ATTTACCAGGATTTTATCAGTTGGCAAATTTTTGATATCTTACATAGAAGCCAAGAAAAATCGAACTAGTAAGGGCCCTCCTATTACAGGTTTCACGGTATTTTCCATTTTTCCGACCCAGCTCAGTTTTTAAGAAATTCTCGCTATCACCTTCATATTACCTTTTTTTTCCATCATGAATTTTTCCGAATCCTTTAGTGTAAAATTGGGGAATTCTCGTTTTTTATCATTCAAGGTTTTTTTTATGTTTCCATTACTTCGCAATTTCCAGATTTTTAGCTTATCATGTTTTGTTATCAGCTATTCCCAGATTTTTTTTAGCTTCACGAATTTCAGAAGTTTCAAGTCATTCCCCAAAAAAAAACAATCGTCCGAGAAAATTGTGATTTTTGGAAACTCCGAGAAATCTGACATATAACTTTTCTGGAAATCCGAAATTTTTAATAAACTACAGTAATTCAATTTTTCACTTTTATCCAATTATATTTTTATCTAGTTCMAAAAAAAGTTATCTTGCTTTATATAGGGTGATCTTCCTCATACAAGATATACTTTTGAGATGGAATAGTATGGATTTTTGAATTCTTTAAAAGTGACATCTGAAAATTTACAATCTTTCTTTTTGTCACCTAGATTTTTTTTTTGCCAAAACATCATTTTCAGCCCAGTACTGTAGATCGTACCATTTTCCGAACCCCTCTAAACCAATAAACATCTAAAATTCCAAATTTTTGCAGGCTCTGGAATTGGCTCGATCGGCCTACCAATTCTTGGCGGTCGAGGGCGTGGAGTCATGTCTGATAGTCATATGCAACGAACATTTAACGAAGCAATGAGGCAGAGGAGGACCAGTTTACCAGCAAATAGTTTATCGCTGAATGGAACCAAAAGTTTGGTGAGTTCAAAAAAGTCCGAAGATGCCTAGCTAGATATCTGCACTGCAATATTTTCCTTATCATCATTATCACTTCTTCTGAGAAAAAGATCAAAAACCTCTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTTCAGAAGTTTCAAGTCAT</pcr_primer_p1>
		<pcr_primer_p2>AAATCCATACTATTCCATCTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATTTCAGAAGTTTCAAGTCATTCCCCAAAAAAAAACAATCGTCCGAGAAAATTGTGATTTTTGGAAACTCCGAGAAATCTGACATATAACTTTTCTGGAAATCCGAAATTTTTAATAAACTACAGTAATTCAATTTTTCACTTTTATCCAATTATATTTTTATCTAGTTCAAAAAAAAGTTATCTTGCTTTATATAGGGTGATCTTCCTCATACAAGATATACTTTTGAGATGGAATAGTATGGATTT</canonical_amplicon>
		<polymorphic_amplicon>GAATTTCAGAAGTTTCAAGTCATTCCCCAAAAAAAAACAATCGTCCGAGAAAATTGTGATTTTTGGAAACTCCGAGAAATCTGACATATAACTTTTCTGGAAATCCGAAATTTTTAATAAACTACAGTAATTCAATTTTTCACTTTTATCCAATTATATTTTTATCTAGTTCMAAAAAAAGTTATCTTGCTTTATATAGGGTGATCTTCCTCATACAAGATATACTTTTGAGATGGAATAGTATGGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37588</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>454084</contig_pos>
        <strand></strand>
        <context>tgcaaggtat[C/A]aaaaagtatt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CCAGAACCGTCAATTTCGAGCTCAATTATCTCGATTCCTGTGCAAGGTAT</left_flank>
        <right_flank>AAAAAGTATTCAACTGATAAATTGTTTGTCACAATATCACCAATATTTTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCGATATTTCAGAATATCCATTTTTTTCCATAACAAATACCCGTTTTTTGTAGATCATTGACCCAATCAACCACTACCTAATGCATTGAGTTGTCTGCTAGTTTTTTTCTGATTCTTTTTCTCTTTTTTTTCTTTCAAAATTTTAGTAAGAGAGCAAAAACAATATACATCCAACAAACCAAATAAAAAAAATAGAAATTCGAAAATGACAAAAGATTGACGAGAAGAAGTCTGTTTCGATTATTCATCCATGTCTTTGGGAGAAGAGGAAGAGTTCGCGAGATTCGACACAAAGAAAAACAATTGAGCGAGAGCAGACCACACAGAATTTGTGATTTTCTGTGGCTTTTGGTTTAGTTCTTCTGTTTTTTTTGGTTTGAAAACTAAGGATGAGTATTTGGAGTACTGTAACTTGTTGAAAGACAGTAAATACTCTATAGAAGCCCACCAGAACCGTCAATTTCGAGCTCAATTATCTCGATTCCTGTGCAAGGTATCAAAAAGTATTCAACTGATAAATTGTTTGTCACAATATCACCAATATTTTGTTAGTTGACACATTTTTGATATTTTGCAATGGAATTGAGATAACTGAGCTCAAACTTGACAGTCAGGGAGGCCCTTCTATTACAGGTTTTACGGTATATTTCATCCAAGTTTTGAGAATCTAGAAAAAATTATAATCTTGCGGATTCAAAGTATTACGAATTTGAAAATTCCTTTATTCTAAAAAAATCATATAGCCTAATATTTGATCCCAAGAATCTTGGAATCCCCTCGAAAACGAAAAAACCTAGTTACCAAAATTCAAGATATTATGATCACGAAACTGTCGAATCTGGATATTGTCCCAATTTGTTTGAATCCGATATTTGAATTGAAATTTCGGACGCTTTCAGAATCTTGGAACTTCATACTTCAAACGCTCAATTTTTCCACCTTATGATCCTCATTCTTTAAAAGCTCTATATTCCTTTCCCTTGCCGTGTTTGTCGTAC</canonical>
            <polymorphic>TTCCGATATTTCAGAATATCCATTTTTTTCCATAACAAATACCCGTTTTTTGTAGATCATTGACCCAATCAACCACTACCTAATGCATTGAGTTGTCTGCTAGTTTTTTTCTGATTCTTTTTCTCTTTTTTTTCTTTCAAAATTTTAGTAAGAGAGCAAAAACAATATACATCCAACAAACCAAATAAAAAAAATAGAAATTCGAAAATGACAAAAGATTGACGAGAAGAAGTCTGTTTCGATTATTCATCCATGTCTTTGGGAGAAGAGGAAGAGTTCGCGAGATTCGACACAAAGAAAAACAATTGAGCGAGAGCAGACCACACAGAATTTGTGATTTTCTGTGGCTTTTGGTTTAGTTCTTCTGTTTTTTTTGGTTTGAAAACTAAGGATGAGTATTTGGAGTACTGTAACTTGTTGAAAGACAGTAAATACTCTATAGAAGCCCACCAGAACCGTCAATTTCGAGCTCAATTATCTCGATTCCTGTGCAAGGTATMAAAAAGTATTCAACTGATAAATTGTTTGTCACAATATCACCAATATTTTGTTAGTTGACACATTTTTGATATTTTGCAATGGAATTGAGATAACTGAGCTCAAACTTGACAGTCAGGGAGGCCCTTCTATTACAGGTTTTACGGTATATTTCATCCAAGTTTTGAGAATCTAGAAAAAATTATAATCTTGCGGATTCAAAGTATTACGAATTTGAAAATTCCTTTATTCTAAAAAAATCATATAGCCTAATATTTGATCCCAAGAATCTTGGAATCCCCTCGAAAACGAAAAAACCTAGTTACCAAAATTCAAGATATTATGATCACGAAACTGTCGAATCTGGATATTGTCCCAATTTGTTTGAATCCGATATTTGAATTGAAATTTCGGACGCTTTCAGAATCTTGGAACTTCATACTTCAAACGCTCAATTTTTCCACCTTATGATCCTCATTCTTTAAAAGCTCTATATTCCTTTCCCTTGCCGTGTTTGTCGTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAGTACTGTAACTTGTTGAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTCTCAAAACTTGGATGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>TGGAGTACTGTAACTTGTTGAAAGACAGTAAATACTCTATAGAAGCCCACCAGAACCGTCAATTTCGAGCTCAATTATCTCGATTCCTGTGCAAGGTATCAAAAAGTATTCAACTGATAAATTGTTTGTCACAATATCACCAATATTTTGTTAGTTGACACATTTTTGATATTTTGCAATGGAATTGAGATAACTGAGCTCAAACTTGACAGTCAGGGAGGCCCTTCTATTACAGGTTTTACGGTATATTTCATCCAAGTTTTGAGAAT</canonical_amplicon>
		<polymorphic_amplicon>TGGAGTACTGTAACTTGTTGAAAGACAGTAAATACTCTATAGAAGCCCACCAGAACCGTCAATTTCGAGCTCAATTATCTCGATTCCTGTGCAAGGTATMAAAAAGTATTCAACTGATAAATTGTTTGTCACAATATCACCAATATTTTGTTAGTTGACACATTTTTGATATTTTGCAATGGAATTGAGATAACTGAGCTCAAACTTGACAGTCAGGGAGGCCCTTCTATTACAGGTTTTACGGTATATTTCATCCAAGTTTTGAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37589</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>454116</contig_pos>
        <strand></strand>
        <context>ttgtttgtca[C/T]aatatcacca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATTCCTGTGCAAGGTATCAAAAAGTATTCAACTGATAAATTGTTTGTCA</left_flank>
        <right_flank>AATATCACCAATATTTTGTTAGTTGACACATTTTTGATATTTTGCAATGG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACAAATACCCGTTTTTTGTAGATCATTGACCCAATCAACCACTACCTAATGCATTGAGTTGTCTGCTAGTTTTTTTCTGATTCTTTTTCTCTTTTTTTTCTTTCAAAATTTTAGTAAGAGAGCAAAAACAATATACATCCAACAAACCAAATAAAAAAAATAGAAATTCGAAAATGACAAAAGATTGACGAGAAGAAGTCTGTTTCGATTATTCATCCATGTCTTTGGGAGAAGAGGAAGAGTTCGCGAGATTCGACACAAAGAAAAACAATTGAGCGAGAGCAGACCACACAGAATTTGTGATTTTCTGTGGCTTTTGGTTTAGTTCTTCTGTTTTTTTTGGTTTGAAAACTAAGGATGAGTATTTGGAGTACTGTAACTTGTTGAAAGACAGTAAATACTCTATAGAAGCCCACCAGAACCGTCAATTTCGAGCTCAATTATCTCGATTCCTGTGCAAGGTATCAAAAAGTATTCAACTGATAAATTGTTTGTCACAATATCACCAATATTTTGTTAGTTGACACATTTTTGATATTTTGCAATGGAATTGAGATAACTGAGCTCAAACTTGACAGTCAGGGAGGCCCTTCTATTACAGGTTTTACGGTATATTTCATCCAAGTTTTGAGAATCTAGAAAAAATTATAATCTTGCGGATTCAAAGTATTACGAATTTGAAAATTCCTTTATTCTAAAAAAATCATATAGCCTAATATTTGATCCCAAGAATCTTGGAATCCCCTCGAAAACGAAAAAACCTAGTTACCAAAATTCAAGATATTATGATCACGAAACTGTCGAATCTGGATATTGTCCCAATTTGTTTGAATCCGATATTTGAATTGAAATTTCGGACGCTTTCAGAATCTTGGAACTTCATACTTCAAACGCTCAATTTTTCCACCTTATGATCCTCATTCTTTAAAAGCTCTATATTCCTTTCCCTTGCCGTGTTTGTCGTACCTCTTTGATCATGATCTCACATCATAGAATCT</canonical>
            <polymorphic>TAACAAATACCCGTTTTTTGTAGATCATTGACCCAATCAACCACTACCTAATGCATTGAGTTGTCTGCTAGTTTTTTTCTGATTCTTTTTCTCTTTTTTTTCTTTCAAAATTTTAGTAAGAGAGCAAAAACAATATACATCCAACAAACCAAATAAAAAAAATAGAAATTCGAAAATGACAAAAGATTGACGAGAAGAAGTCTGTTTCGATTATTCATCCATGTCTTTGGGAGAAGAGGAAGAGTTCGCGAGATTCGACACAAAGAAAAACAATTGAGCGAGAGCAGACCACACAGAATTTGTGATTTTCTGTGGCTTTTGGTTTAGTTCTTCTGTTTTTTTTGGTTTGAAAACTAAGGATGAGTATTTGGAGTACTGTAACTTGTTGAAAGACAGTAAATACTCTATAGAAGCCCACCAGAACCGTCAATTTCGAGCTCAATTATCTCGATTCCTGTGCAAGGTATCAAAAAGTATTCAACTGATAAATTGTTTGTCAYAATATCACCAATATTTTGTTAGTTGACACATTTTTGATATTTTGCAATGGAATTGAGATAACTGAGCTCAAACTTGACAGTCAGGGAGGCCCTTCTATTACAGGTTTTACGGTATATTTCATCCAAGTTTTGAGAATCTAGAAAAAATTATAATCTTGCGGATTCAAAGTATTACGAATTTGAAAATTCCTTTATTCTAAAAAAATCATATAGCCTAATATTTGATCCCAAGAATCTTGGAATCCCCTCGAAAACGAAAAAACCTAGTTACCAAAATTCAAGATATTATGATCACGAAACTGTCGAATCTGGATATTGTCCCAATTTGTTTGAATCCGATATTTGAATTGAAATTTCGGACGCTTTCAGAATCTTGGAACTTCATACTTCAAACGCTCAATTTTTCCACCTTATGATCCTCATTCTTTAAAAGCTCTATATTCCTTTCCCTTGCCGTGTTTGTCGTACCTCTTTGATCATGATCTCACATCATAGAATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>266 217 114 103 50 43 42 40 31 29 21 13 11 10 8 2</canonical_bands>
                <polymorphic_bands>266 217 114 103 50 48 43 42 31 29 21 13 11 10 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>377 271 234 118</canonical_bands>
                <polymorphic_bands>389 377 234</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGAGTACTGTAACTTGTTGAAA</pcr_primer_p1>
		<pcr_primer_p2>ATTCTCAAAACTTGGATGAAATA</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>TGGAGTACTGTAACTTGTTGAAAGACAGTAAATACTCTATAGAAGCCCACCAGAACCGTCAATTTCGAGCTCAATTATCTCGATTCCTGTGCAAGGTATCAAAAAGTATTCAACTGATAAATTGTTTGTCACAATATCACCAATATTTTGTTAGTTGACACATTTTTGATATTTTGCAATGGAATTGAGATAACTGAGCTCAAACTTGACAGTCAGGGAGGCCCTTCTATTACAGGTTTTACGGTATATTTCATCCAAGTTTTGAGAAT</canonical_amplicon>
		<polymorphic_amplicon>TGGAGTACTGTAACTTGTTGAAAGACAGTAAATACTCTATAGAAGCCCACCAGAACCGTCAATTTCGAGCTCAATTATCTCGATTCCTGTGCAAGGTATCAAAAAGTATTCAACTGATAAATTGTTTGTCAYAATATCACCAATATTTTGTTAGTTGACACATTTTTGATATTTTGCAATGGAATTGAGATAACTGAGCTCAAACTTGACAGTCAGGGAGGCCCTTCTATTACAGGTTTTACGGTATATTTCATCCAAGTTTTGAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37590</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>478324</contig_pos>
        <strand>+</strand>
        <context>AATCGTCCTC[A/G]CTGGAACTGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGGCTGATGGACTTCGTGGATCCTCGTCGTTGCTGCTCGAATCGTCCTC</left_flank>
        <right_flank>CTGGAACTGCTTGATGGAGTTGAGTCCTTCTTCTCCAGAAGGAGACTGGA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAATGCATATGAATACGGTTGTGGGACATCTGCCCCTCCTCTCCTACTGAATCATTTATCCAGAAGCAAATGGTCACAGGCATATCATCTCTATTACCCAATTAGCTACCCTATATATGAATTTATAATTACTACTAACCATTTTCCTGTGTCACTCGATTCATCACTGATTGTGGGTTCAATTGTTGTTGGAGCAAGAAGAAGTAGGCCTGGAAATTTGGAATTTTTTCTGAAAATGTTTGCCGCGCTTCTTTTCAAGCAGCTGTCTGGTGCGCCTTCGGCGCAAAAAATATTCCCTAGGACCCAGACGGTTACCTGAATGCTCGGATCAATCGTTCCATTTCCATTTCCCATGAGCTGAGCCATTATTTGGTTTGGTGACGTGGCATTCTCCGAACTAGACGATGAAGACGAAGTCGGTGCAAACATGAATGAAGAAGCCGCGGTGTCGGCTGATGGACTTCGTGGATCCTCGTCGTTGCTGCTCGAATCGTCCTCGCTGGAACTGCTTGATGGAGTTGAGTCCTTCTTCTCCAGAAGGAGACTGGAGATACTGTAGGTCGATGACATCTTCCGATTCTCCAGATCCTTGTCGTCCGGAGTTATGGACAATTGTGGTTGCTCCGATGGCATGACGAGACTCATTTGTGAAGAGATTAAGAGTAGGAAAATAGATCTGGAAAGAAAATTGGATTGAAAAAAAACGGTAGATGCTTGAAAAGTAGGAGAAAGAAAGCGAAATGGATCAGCATGAAGAAGAAGTGGTTGTTATGACATAAACGCCACGTCATCATCGGAAACCGAATTTAACAATTTTCTAATTTATATACAGTGTCACACTAATATGTCTCACTCTCTCTCCCTTCGCCCCGGAAAGTCGTACATTTTTAATTAAACTGATTGGATACTGAAGAAGAAGAAATACATGGAATTCAGACAACGACAACGACAAAAACAATATCAATGTTTGACATATAGACAGGCAAAAAATAGAGAGAG</canonical>
            <polymorphic>CGAATGCATATGAATACGGTTGTGGGACATCTGCCCCTCCTCTCCTACTGAATCATTTATCCAGAAGCAAATGGTCACAGGCATATCATCTCTATTACCCAATTAGCTACCCTATATATGAATTTATAATTACTACTAACCATTTTCCTGTGTCACTCGATTCATCACTGATTGTGGGTTCAATTGTTGTTGGAGCAAGAAGAAGTAGGCCTGGAAATTTGGAATTTTTTCTGAAAATGTTTGCCGCGCTTCTTTTCAAGCAGCTGTCTGGTGCGCCTTCGGCGCAAAAAATATTCCCTAGGACCCAGACGGTTACCTGAATGCTCGGATCAATCGTTCCATTTCCATTTCCCATGAGCTGAGCCATTATTTGGTTTGGTGACGTGGCATTCTCCGAACTAGACGATGAAGACGAAGTCGGTGCAAACATGAATGAAGAAGCCGCGGTGTCGGCTGATGGACTTCGTGGATCCTCGTCGTTGCTGCTCGAATCGTCCTCRCTGGAACTGCTTGATGGAGTTGAGTCCTTCTTCTCCAGAAGGAGACTGGAGATACTGTAGGTCGATGACATCTTCCGATTCTCCAGATCCTTGTCGTCCGGAGTTATGGACAATTGTGGTTGCTCCGATGGCATGACGAGACTCATTTGTGAAGAGATTAAGAGTAGGAAAATAGATCTGGAAAGAAAATTGGATTGAAAAAAAACGGTAGATGCTTGAAAAGTAGGAGAAAGAAAGCGAAATGGATCAGCATGAAGAAGAAGTGGTTGTTATGACATAAACGCCACGTCATCATCGGAAACCGAATTTAACAATTTTCTAATTTATATACAGTGTCACACTAATATGTCTCACTCTCTCTCCCTTCGCCCCGGAAAGTCGTACATTTTTAATTAAACTGATTGGATACTGAAGAAGAAGAAATACATGGAATTCAGACAACGACAACGACAAAAACAATATCAATGTTTGACATATAGACAGGCAAAAAATAGAGAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>372 279 171 122 56</canonical_bands>
                <polymorphic_bands>372 279 178 171</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGCAAACATGAATGAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>TCTTAATCTCTTCACAAATGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GTGCAAACATGAATGAAGAAGCCGCGGTGTCGGCTGATGGACTTCGTGGATCCTCGTCGTTGCTGCTCGAATCGTCCTCGCTGGAACTGCTTGATGGAGTTGAGTCCTTCTTCTCCAGAAGGAGACTGGAGATACTGTAGGTCGATGACATCTTCCGATTCTCCAGATCCTTGTCGTCCGGAGTTATGGACAATTGTGGTTGCTCCGATGGCATGACGAGACTCATTTGTGAAGAGATTAAGA</canonical_amplicon>
		<polymorphic_amplicon>GTGCAAACATGAATGAAGAAGCCGCGGTGTCGGCTGATGGACTTCGTGGATCCTCGTCGTTGCTGCTCGAATCGTCCTCRCTGGAACTGCTTGATGGAGTTGAGTCCTTCTTCTCCAGAAGGAGACTGGAGATACTGTAGGTCGATGACATCTTCCGATTCTCCAGATCCTTGTCGTCCGGAGTTATGGACAATTGTGGTTGCTCCGATGGCATGACGAGACTCATTTGTGAAGAGATTAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37591</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>478522</contig_pos>
        <strand>+</strand>
        <context>AATTGGWTTG[G/T]AAAAAAACGG</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGTGAAGAGATTAAGAGTAGGAAAATAGATCTGGAAAGAAAATTGGATTG</left_flank>
        <right_flank>AAAAAAACGGTAGATGCTTGAAAAGTAGGAGAAAGAAAGCGAAATGGATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGAAGTAGGCCTGGAAATTTGGAATTTTTTCTGAAAATGTTTGCCGCGCTTCTTTTCAAGCAGCTGTCTGGTGCGCCTTCGGCGCAAAAAATATTCCCTAGGACCCAGACGGTTACCTGAATGCTCGGATCAATCGTTCCATTTCCATTTCCCATGAGCTGAGCCATTATTTGGTTTGGTGACGTGGCATTCTCCGAACTAGACGATGAAGACGAAGTCGGTGCAAACATGAATGAAGAAGCCGCGGTGTCGGCTGATGGACTTCGTGGATCCTCGTCGTTGCTGCTCGAATCGTCCTCGCTGGAACTGCTTGATGGAGTTGAGTCCTTCTTCTCCAGAAGGAGACTGGAGATACTGTAGGTCGATGACATCTTCCGATTCTCCAGATCCTTGTCGTCCGGAGTTATGGACAATTGTGGTTGCTCCGATGGCATGACGAGACTCATTTGTGAAGAGATTAAGAGTAGGAAAATAGATCTGGAAAGAAAATTGGATTGAAAAAAAACGGTAGATGCTTGAAAAGTAGGAGAAAGAAAGCGAAATGGATCAGCATGAAGAAGAAGTGGTTGTTATGACATAAACGCCACGTCATCATCGGAAACCGAATTTAACAATTTTCTAATTTATATACAGTGTCACACTAATATGTCTCACTCTCTCTCCCTTCGCCCCGGAAAGTCGTACATTTTTAATTAAACTGATTGGATACTGAAGAAGAAGAAATACATGGAATTCAGACAACGACAACGACAAAAACAATATCAATGTTTGACATATAGACAGGCAAAAAATAGAGAGAGAAAGACAAATTAACCAAGAATTAACTATATATTGGAATCTTAGATTTGTGTATATAGACGAGGAGTTTTGATGAAAATGAGTGAGCCACTGGAAAAAACAATGCGATAAATTACCGGCTTTGACAAGAATGAAATGAGCAATTCGTATTTTGTTAGTTGATTAGGGAAAGAAAAATAAACCGAAATGAAGGATTACTT</canonical>
            <polymorphic>GAAGAAGTAGGCCTGGAAATTTGGAATTTTTTCTGAAAATGTTTGCCGCGCTTCTTTTCAAGCAGCTGTCTGGTGCGCCTTCGGCGCAAAAAATATTCCCTAGGACCCAGACGGTTACCTGAATGCTCGGATCAATCGTTCCATTTCCATTTCCCATGAGCTGAGCCATTATTTGGTTTGGTGACGTGGCATTCTCCGAACTAGACGATGAAGACGAAGTCGGTGCAAACATGAATGAAGAAGCCGCGGTGTCGGCTGATGGACTTCGTGGATCCTCGTCGTTGCTGCTCGAATCGTCCTCGCTGGAACTGCTTGATGGAGTTGAGTCCTTCTTCTCCAGAAGGAGACTGGAGATACTGTAGGTCGATGACATCTTCCGATTCTCCAGATCCTTGTCGTCCGGAGTTATGGACAATTGTGGTTGCTCCGATGGCATGACGAGACTCATTTGTGAAGAGATTAAGAGTAGGAAAATAGATCTGGAAAGAAAATTGGATTGKAAAAAAACGGTAGATGCTTGAAAAGTAGGAGAAAGAAAGCGAAATGGATCAGCATGAAGAAGAAGTGGTTGTTATGACATAAACGCCACGTCATCATCGGAAACCGAATTTAACAATTTTCTAATTTATATACAGTGTCACACTAATATGTCTCACTCTCTCTCCCTTCGCCCCGGAAAGTCGTACATTTTTAATTAAACTGATTGGATACTGAAGAAGAAGAAATACATGGAATTCAGACAACGACAACGACAAAAACAATATCAATGTTTGACATATAGACAGGCAAAAAATAGAGAGAGAAAGACAAATTAACCAAGAATTAACTATATATTGGAATCTTAGATTTGTGTATATAGACGAGGAGTTTTGATGAAAATGAGTGAGCCACTGGAAAAAACAATGCGATAAATTACCGGCTTTGACAAGAATGAAATGAGCAATTCGTATTTTGTTAGTTGATTAGGGAAAGAAAAATAAACCGAAATGAAGGATTACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAGACTGGAGATACTGTAGGT</pcr_primer_p1>
		<pcr_primer_p2>TGTCATAACAACCACTTCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AGGAGACTGGAGATACTGTAGGTCGATGACATCTTCCGATTCTCCAGATCCTTGTCGTCCGGAGTTATGGACAATTGTGGTTGCTCCGATGGCATGACGAGACTCATTTGTGAAGAGATTAAGAGTAGGAAAATAGATCTGGAAAGAAAATTGGATTGAAAAAAAACGGTAGATGCTTGAAAAGTAGGAGAAAGAAAGCGAAATGGATCAGCATGAAGAAGAAGTGGTTGTTATGACA</canonical_amplicon>
		<polymorphic_amplicon>AGGAGACTGGAGATACTGTAGGTCGATGACATCTTCCGATTCTCCAGATCCTTGTCGTCCGGAGTTATGGACAATTGTGGTTGCTCCGATGGCATGACGAGACTCATTTGTGAAGAGATTAAGAGTAGGAAAATAGATCTGGAAAGAAAATTGGATTGKAAAAAAACGGTAGATGCTTGAAAAGTAGGAGAAAGAAAGCGAAATGGATCAGCATGAAGAAGAAGTGGTTGTTATGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37592</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>497046</contig_pos>
        <strand></strand>
        <context>tcaattttga[G/T]ctcaattatc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGA</left_flank>
        <right_flank>CTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTTAAAATATATTTCATAGAGACTGGGATAATTGAGCTCCAAGTGCAAGCATAAGGTTGACTTCTATTATTTCAGAGATTTTACGATCTTTAATTTATTGCTCACCGAAGTTTTCCAACCCTTTTCCGTTAATTCATCAATTCCTTCAGAGCTAATAAACTTTTTAATTGTGATTTTTAAAGTTCGAAATTCCTTCTGCTCTCTCTATTGTGTACCATATGGCTTTATATGAGTTGGCATGGGGTGCAAATGAAGAAACTTTTATTACTAACCATCCGGTAGGCCACTTTGAGTAATAAAATTAGTTGAGATGCCAGGAAAGAGGATCAGATTTATAGTTTTAGGGCTTCCGGTGGTTTGAATGCGGATCGAAATTTGAATAGGAGGGATTTGCAAACACGAAAAAATGGTTTTAGTTTTAATAATCAGCTAATCAGATCATCAATGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTATCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGAGTTTCGAAATTTCTGAACAGTTTTTTTTTTTGAAATTTCTGAAATGAATGGAATTGATAAATTTTTACAAGTTCGAGAATTCTATTCGGTCGAATATGCGAAATTCTGCCAGAACACCTAAATCTTGGTTTCTTTGAACGCAACCAATCATTTTTATGGACACCTTTTCTTTTCGAAAAGTAGAAGGTCAAAATGTCGAAATTGGATGAGACAGGTGTCTCCAGAATGAGCACCTTCTTCCAAAAAGCGGCAATAAACCGAATGAGAAAAGAGGTGCCAT</canonical>
            <polymorphic>TTTTTTTAAAATATATTTCATAGAGACTGGGATAATTGAGCTCCAAGTGCAAGCATAAGGTTGACTTCTATTATTTCAGAGATTTTACGATCTTTAATTTATTGCTCACCGAAGTTTTCCAACCCTTTTCCGTTAATTCATCAATTCCTTCAGAGCTAATAAACTTTTTAATTGTGATTTTTAAAGTTCGAAATTCCTTCTGCTCTCTCTATTGTGTACCATATGGCTTTATATGAGTTGGCATGGGGTGCAAATGAAGAAACTTTTATTACTAACCATCCGGTAGGCCACTTTGAGTAATAAAATTAGTTGAGATGCCAGGAAAGAGGATCAGATTTATAGTTTTAGGGCTTCCGGTGGTTTGAATGCGGATCGAAATTTGAATAGGAGGGATTTGCAAACACGAAAAAATGGTTTTAGTTTTAATAATCAGCTAATCAGATCATCAATGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAKCTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTATCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGAGTTTCGAAATTTCTGAACAGTTTTTTTTTTTGAAATTTCTGAAATGAATGGAATTGATAAATTTTTACAAGTTCGAGAATTCTATTCGGTCGAATATGCGAAATTCTGCCAGAACACCTAAATCTTGGTTTCTTTGAACGCAACCAATCATTTTTATGGACACCTTTTCTTTTCGAAAAGTAGAAGGTCAAAATGTCGAAATTGGATGAGACAGGTGTCTCCAGAATGAGCACCTTCTTCCAAAAAGCGGCAATAAACCGAATGAGAAAAGAGGTGCCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>371 278 129 115 67 40</canonical_bands>
                <polymorphic_bands>371 278 196 115 40</polymorphic_bands>
            </assay>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>460 321 129 48 42</canonical_bands>
                <polymorphic_bands>589 321 48 42</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>460 369 129 42</canonical_bands>
                <polymorphic_bands>589 369 42</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>460 321 129 48 42</canonical_bands>
                <polymorphic_bands>589 321 48 42</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>349 129 115 83 71 63 61 43 40 24 22</canonical_bands>
                <polymorphic_bands>349 153 115 83 71 63 61 43 40 22</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>460 371 129 40</canonical_bands>
                <polymorphic_bands>589 371 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAGATCATCAATGCTTACG</pcr_primer_p1>
		<pcr_primer_p2>AACTCAATTTTGTTAGTTTTGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>ATCAGATCATCAATGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTATCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGAGTT</canonical_amplicon>
		<polymorphic_amplicon>ATCAGATCATCAATGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAKCTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTATCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37593</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>497070</contig_pos>
        <strand></strand>
        <context>attcctataa[A/G]ggatatcaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAA</left_flank>
        <right_flank>GGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTGGGATAATTGAGCTCCAAGTGCAAGCATAAGGTTGACTTCTATTATTTCAGAGATTTTACGATCTTTAATTTATTGCTCACCGAAGTTTTCCAACCCTTTTCCGTTAATTCATCAATTCCTTCAGAGCTAATAAACTTTTTAATTGTGATTTTTAAAGTTCGAAATTCCTTCTGCTCTCTCTATTGTGTACCATATGGCTTTATATGAGTTGGCATGGGGTGCAAATGAAGAAACTTTTATTACTAACCATCCGGTAGGCCACTTTGAGTAATAAAATTAGTTGAGATGCCAGGAAAGAGGATCAGATTTATAGTTTTAGGGCTTCCGGTGGTTTGAATGCGGATCGAAATTTGAATAGGAGGGATTTGCAAACACGAAAAAATGGTTTTAGTTTTAATAATCAGCTAATCAGATCATCAATGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTATCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGAGTTTCGAAATTTCTGAACAGTTTTTTTTTTTGAAATTTCTGAAATGAATGGAATTGATAAATTTTTACAAGTTCGAGAATTCTATTCGGTCGAATATGCGAAATTCTGCCAGAACACCTAAATCTTGGTTTCTTTGAACGCAACCAATCATTTTTATGGACACCTTTTCTTTTCGAAAAGTAGAAGGTCAAAATGTCGAAATTGGATGAGACAGGTGTCTCCAGAATGAGCACCTTCTTCCAAAAAGCGGCAATAAACCGAATGAGAAAAGAGGTGCCATCTTTTATATATTGTCATATTAGCA</canonical>
            <polymorphic>GACTGGGATAATTGAGCTCCAAGTGCAAGCATAAGGTTGACTTCTATTATTTCAGAGATTTTACGATCTTTAATTTATTGCTCACCGAAGTTTTCCAACCCTTTTCCGTTAATTCATCAATTCCTTCAGAGCTAATAAACTTTTTAATTGTGATTTTTAAAGTTCGAAATTCCTTCTGCTCTCTCTATTGTGTACCATATGGCTTTATATGAGTTGGCATGGGGTGCAAATGAAGAAACTTTTATTACTAACCATCCGGTAGGCCACTTTGAGTAATAAAATTAGTTGAGATGCCAGGAAAGAGGATCAGATTTATAGTTTTAGGGCTTCCGGTGGTTTGAATGCGGATCGAAATTTGAATAGGAGGGATTTGCAAACACGAAAAAATGGTTTTAGTTTTAATAATCAGCTAATCAGATCATCAATGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAARGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTATCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGAGTTTCGAAATTTCTGAACAGTTTTTTTTTTTGAAATTTCTGAAATGAATGGAATTGATAAATTTTTACAAGTTCGAGAATTCTATTCGGTCGAATATGCGAAATTCTGCCAGAACACCTAAATCTTGGTTTCTTTGAACGCAACCAATCATTTTTATGGACACCTTTTCTTTTCGAAAAGTAGAAGGTCAAAATGTCGAAATTGGATGAGACAGGTGTCTCCAGAATGAGCACCTTCTTCCAAAAAGCGGCAATAAACCGAATGAGAAAAGAGGTGCCATCTTTTATATATTGTCATATTAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAGATCATCAATGCTTACG</pcr_primer_p1>
		<pcr_primer_p2>AACTCAATTTTGTTAGTTTTGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>ATCAGATCATCAATGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTATCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGAGTT</canonical_amplicon>
		<polymorphic_amplicon>ATCAGATCATCAATGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAARGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTATCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37594</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>497109</contig_pos>
        <strand></strand>
        <context>atattagtga[C/T]attatgataa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGA</left_flank>
        <right_flank>ATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTCTATTATTTCAGAGATTTTACGATCTTTAATTTATTGCTCACCGAAGTTTTCCAACCCTTTTCCGTTAATTCATCAATTCCTTCAGAGCTAATAAACTTTTTAATTGTGATTTTTAAAGTTCGAAATTCCTTCTGCTCTCTCTATTGTGTACCATATGGCTTTATATGAGTTGGCATGGGGTGCAAATGAAGAAACTTTTATTACTAACCATCCGGTAGGCCACTTTGAGTAATAAAATTAGTTGAGATGCCAGGAAAGAGGATCAGATTTATAGTTTTAGGGCTTCCGGTGGTTTGAATGCGGATCGAAATTTGAATAGGAGGGATTTGCAAACACGAAAAAATGGTTTTAGTTTTAATAATCAGCTAATCAGATCATCAATGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTATCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGAGTTTCGAAATTTCTGAACAGTTTTTTTTTTTGAAATTTCTGAAATGAATGGAATTGATAAATTTTTACAAGTTCGAGAATTCTATTCGGTCGAATATGCGAAATTCTGCCAGAACACCTAAATCTTGGTTTCTTTGAACGCAACCAATCATTTTTATGGACACCTTTTCTTTTCGAAAAGTAGAAGGTCAAAATGTCGAAATTGGATGAGACAGGTGTCTCCAGAATGAGCACCTTCTTCCAAAAAGCGGCAATAAACCGAATGAGAAAAGAGGTGCCATCTTTTATATATTGTCATATTAGCAGGTGTTACTCTTGAAGACGTAATTCGGAAAAGAAGAAGA</canonical>
            <polymorphic>ACTTCTATTATTTCAGAGATTTTACGATCTTTAATTTATTGCTCACCGAAGTTTTCCAACCCTTTTCCGTTAATTCATCAATTCCTTCAGAGCTAATAAACTTTTTAATTGTGATTTTTAAAGTTCGAAATTCCTTCTGCTCTCTCTATTGTGTACCATATGGCTTTATATGAGTTGGCATGGGGTGCAAATGAAGAAACTTTTATTACTAACCATCCGGTAGGCCACTTTGAGTAATAAAATTAGTTGAGATGCCAGGAAAGAGGATCAGATTTATAGTTTTAGGGCTTCCGGTGGTTTGAATGCGGATCGAAATTTGAATAGGAGGGATTTGCAAACACGAAAAAATGGTTTTAGTTTTAATAATCAGCTAATCAGATCATCAATGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGAYATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTATCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGAGTTTCGAAATTTCTGAACAGTTTTTTTTTTTGAAATTTCTGAAATGAATGGAATTGATAAATTTTTACAAGTTCGAGAATTCTATTCGGTCGAATATGCGAAATTCTGCCAGAACACCTAAATCTTGGTTTCTTTGAACGCAACCAATCATTTTTATGGACACCTTTTCTTTTCGAAAAGTAGAAGGTCAAAATGTCGAAATTGGATGAGACAGGTGTCTCCAGAATGAGCACCTTCTTCCAAAAAGCGGCAATAAACCGAATGAGAAAAGAGGTGCCATCTTTTATATATTGTCATATTAGCAGGTGTTACTCTTGAAGACGTAATTCGGAAAAGAAGAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>495 469 36</canonical_bands>
                <polymorphic_bands>964 36</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAGATCATCAATGCTTACG</pcr_primer_p1>
		<pcr_primer_p2>AACTCAATTTTGTTAGTTTTGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>ATCAGATCATCAATGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTATCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGAGTT</canonical_amplicon>
		<polymorphic_amplicon>ATCAGATCATCAATGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGAYATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTATCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37595</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>497127</contig_pos>
        <strand></strand>
        <context>taaacaattt[T/A]ttagttgaca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTT</left_flank>
        <right_flank>TTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTACGATCTTTAATTTATTGCTCACCGAAGTTTTCCAACCCTTTTCCGTTAATTCATCAATTCCTTCAGAGCTAATAAACTTTTTAATTGTGATTTTTAAAGTTCGAAATTCCTTCTGCTCTCTCTATTGTGTACCATATGGCTTTATATGAGTTGGCATGGGGTGCAAATGAAGAAACTTTTATTACTAACCATCCGGTAGGCCACTTTGAGTAATAAAATTAGTTGAGATGCCAGGAAAGAGGATCAGATTTATAGTTTTAGGGCTTCCGGTGGTTTGAATGCGGATCGAAATTTGAATAGGAGGGATTTGCAAACACGAAAAAATGGTTTTAGTTTTAATAATCAGCTAATCAGATCATCAATGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTATCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGAGTTTCGAAATTTCTGAACAGTTTTTTTTTTTGAAATTTCTGAAATGAATGGAATTGATAAATTTTTACAAGTTCGAGAATTCTATTCGGTCGAATATGCGAAATTCTGCCAGAACACCTAAATCTTGGTTTCTTTGAACGCAACCAATCATTTTTATGGACACCTTTTCTTTTCGAAAAGTAGAAGGTCAAAATGTCGAAATTGGATGAGACAGGTGTCTCCAGAATGAGCACCTTCTTCCAAAAAGCGGCAATAAACCGAATGAGAAAAGAGGTGCCATCTTTTATATATTGTCATATTAGCAGGTGTTACTCTTGAAGACGTAATTCGGAAAAGAAGAAGAAGAAATTAGACATTTGGA</canonical>
            <polymorphic>ATTTTACGATCTTTAATTTATTGCTCACCGAAGTTTTCCAACCCTTTTCCGTTAATTCATCAATTCCTTCAGAGCTAATAAACTTTTTAATTGTGATTTTTAAAGTTCGAAATTCCTTCTGCTCTCTCTATTGTGTACCATATGGCTTTATATGAGTTGGCATGGGGTGCAAATGAAGAAACTTTTATTACTAACCATCCGGTAGGCCACTTTGAGTAATAAAATTAGTTGAGATGCCAGGAAAGAGGATCAGATTTATAGTTTTAGGGCTTCCGGTGGTTTGAATGCGGATCGAAATTTGAATAGGAGGGATTTGCAAACACGAAAAAATGGTTTTAGTTTTAATAATCAGCTAATCAGATCATCAATGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTTWTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTATCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGAGTTTCGAAATTTCTGAACAGTTTTTTTTTTTGAAATTTCTGAAATGAATGGAATTGATAAATTTTTACAAGTTCGAGAATTCTATTCGGTCGAATATGCGAAATTCTGCCAGAACACCTAAATCTTGGTTTCTTTGAACGCAACCAATCATTTTTATGGACACCTTTTCTTTTCGAAAAGTAGAAGGTCAAAATGTCGAAATTGGATGAGACAGGTGTCTCCAGAATGAGCACCTTCTTCCAAAAAGCGGCAATAAACCGAATGAGAAAAGAGGTGCCATCTTTTATATATTGTCATATTAGCAGGTGTTACTCTTGAAGACGTAATTCGGAAAAGAAGAAGAAGAAATTAGACATTTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAGATCATCAATGCTTACG</pcr_primer_p1>
		<pcr_primer_p2>AACTCAATTTTGTTAGTTTTGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>ATCAGATCATCAATGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTATCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGAGTT</canonical_amplicon>
		<polymorphic_amplicon>ATCAGATCATCAATGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTTWTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTATCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37596</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>497218</contig_pos>
        <strand></strand>
        <context>acaagtttta[T/A]cggtAATTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTA</left_flank>
        <right_flank>CGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGAGT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGATTTTTAAAGTTCGAAATTCCTTCTGCTCTCTCTATTGTGTACCATATGGCTTTATATGAGTTGGCATGGGGTGCAAATGAAGAAACTTTTATTACTAACCATCCGGTAGGCCACTTTGAGTAATAAAATTAGTTGAGATGCCAGGAAAGAGGATCAGATTTATAGTTTTAGGGCTTCCGGTGGTTTGAATGCGGATCGAAATTTGAATAGGAGGGATTTGCAAACACGAAAAAATGGTTTTAGTTTTAATAATCAGCTAATCAGATCATCAATGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTATCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGAGTTTCGAAATTTCTGAACAGTTTTTTTTTTTGAAATTTCTGAAATGAATGGAATTGATAAATTTTTACAAGTTCGAGAATTCTATTCGGTCGAATATGCGAAATTCTGCCAGAACACCTAAATCTTGGTTTCTTTGAACGCAACCAATCATTTTTATGGACACCTTTTCTTTTCGAAAAGTAGAAGGTCAAAATGTCGAAATTGGATGAGACAGGTGTCTCCAGAATGAGCACCTTCTTCCAAAAAGCGGCAATAAACCGAATGAGAAAAGAGGTGCCATCTTTTATATATTGTCATATTAGCAGGTGTTACTCTTGAAGACGTAATTCGGAAAAGAAGAAGAAGAAATTAGACATTTGGAAATAAAGAACAAGAAAAGGATCACAAGAAGGGAGAAGCTATTAAAAACAATTAGGACTTTTGGATGAATTATTCATTTTGAACAAGAAGCT</canonical>
            <polymorphic>TGTGATTTTTAAAGTTCGAAATTCCTTCTGCTCTCTCTATTGTGTACCATATGGCTTTATATGAGTTGGCATGGGGTGCAAATGAAGAAACTTTTATTACTAACCATCCGGTAGGCCACTTTGAGTAATAAAATTAGTTGAGATGCCAGGAAAGAGGATCAGATTTATAGTTTTAGGGCTTCCGGTGGTTTGAATGCGGATCGAAATTTGAATAGGAGGGATTTGCAAACACGAAAAAATGGTTTTAGTTTTAATAATCAGCTAATCAGATCATCAATGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTAWCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGAGTTTCGAAATTTCTGAACAGTTTTTTTTTTTGAAATTTCTGAAATGAATGGAATTGATAAATTTTTACAAGTTCGAGAATTCTATTCGGTCGAATATGCGAAATTCTGCCAGAACACCTAAATCTTGGTTTCTTTGAACGCAACCAATCATTTTTATGGACACCTTTTCTTTTCGAAAAGTAGAAGGTCAAAATGTCGAAATTGGATGAGACAGGTGTCTCCAGAATGAGCACCTTCTTCCAAAAAGCGGCAATAAACCGAATGAGAAAAGAGGTGCCATCTTTTATATATTGTCATATTAGCAGGTGTTACTCTTGAAGACGTAATTCGGAAAAGAAGAAGAAGAAATTAGACATTTGGAAATAAAGAACAAGAAAAGGATCACAAGAAGGGAGAAGCTATTAAAAACAATTAGGACTTTTGGATGAATTATTCATTTTGAACAAGAAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAGATCATCAATGCTTACG</pcr_primer_p1>
		<pcr_primer_p2>TATCAATTCCATTCATTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>343</pcr_amplicon_size>
		<canonical_amplicon>ATCAGATCATCAATGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTATCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGAGTTTCGAAATTTCTGAACAGTTTTTTTTTTTGAAATTTCTGAAATGAATGGAATTGATA</canonical_amplicon>
		<polymorphic_amplicon>ATCAGATCATCAATGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTAWCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGAGTTTCGAAATTTCTGAACAGTTTTTTTTTTTGAAATTTCTGAAATGAATGGAATTGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37597</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>497272</contig_pos>
        <strand>+</strand>
        <context>ATTGAGTTTC[A/G]AAATTTCTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGAGTTTC</left_flank>
        <right_flank>AAATTTCTGAACAGTTTTTTTTTTTGAAATTTCTGAAATGAATGGAATTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTATATGAGTTGGCATGGGGTGCAAATGAAGAAACTTTTATTACTAACCATCCGGTAGGCCACTTTGAGTAATAAAATTAGTTGAGATGCCAGGAAAGAGGATCAGATTTATAGTTTTAGGGCTTCCGGTGGTTTGAATGCGGATCGAAATTTGAATAGGAGGGATTTGCAAACACGAAAAAATGGTTTTAGTTTTAATAATCAGCTAATCAGATCATCAATGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTATCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGAGTTTCGAAATTTCTGAACAGTTTTTTTTTTTGAAATTTCTGAAATGAATGGAATTGATAAATTTTTACAAGTTCGAGAATTCTATTCGGTCGAATATGCGAAATTCTGCCAGAACACCTAAATCTTGGTTTCTTTGAACGCAACCAATCATTTTTATGGACACCTTTTCTTTTCGAAAAGTAGAAGGTCAAAATGTCGAAATTGGATGAGACAGGTGTCTCCAGAATGAGCACCTTCTTCCAAAAAGCGGCAATAAACCGAATGAGAAAAGAGGTGCCATCTTTTATATATTGTCATATTAGCAGGTGTTACTCTTGAAGACGTAATTCGGAAAAGAAGAAGAAGAAATTAGACATTTGGAAATAAAGAACAAGAAAAGGATCACAAGAAGGGAGAAGCTATTAAAAACAATTAGGACTTTTGGATGAATTATTCATTTTGAACAAGAAGCTACTTGTTAGGGAGAGAGCTAATTGTTTTTTATGTCAATTTCGATTAGAAACATT</canonical>
            <polymorphic>CTTTATATGAGTTGGCATGGGGTGCAAATGAAGAAACTTTTATTACTAACCATCCGGTAGGCCACTTTGAGTAATAAAATTAGTTGAGATGCCAGGAAAGAGGATCAGATTTATAGTTTTAGGGCTTCCGGTGGTTTGAATGCGGATCGAAATTTGAATAGGAGGGATTTGCAAACACGAAAAAATGGTTTTAGTTTTAATAATCAGCTAATCAGATCATCAATGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTATCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGAGTTTCRAAATTTCTGAACAGTTTTTTTTTTTGAAATTTCTGAAATGAATGGAATTGATAAATTTTTACAAGTTCGAGAATTCTATTCGGTCGAATATGCGAAATTCTGCCAGAACACCTAAATCTTGGTTTCTTTGAACGCAACCAATCATTTTTATGGACACCTTTTCTTTTCGAAAAGTAGAAGGTCAAAATGTCGAAATTGGATGAGACAGGTGTCTCCAGAATGAGCACCTTCTTCCAAAAAGCGGCAATAAACCGAATGAGAAAAGAGGTGCCATCTTTTATATATTGTCATATTAGCAGGTGTTACTCTTGAAGACGTAATTCGGAAAAGAAGAAGAAGAAATTAGACATTTGGAAATAAAGAACAAGAAAAGGATCACAAGAAGGGAGAAGCTATTAAAAACAATTAGGACTTTTGGATGAATTATTCATTTTGAACAAGAAGCTACTTGTTAGGGAGAGAGCTAATTGTTTTTTATGTCAATTTCGATTAGAAACATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>498 333 169</canonical_bands>
                <polymorphic_bands>667 333</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>351 296 148 83 69 23 17 13</canonical_bands>
                <polymorphic_bands>420 296 148 83 23 17 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAGATCATCAATGCTTACG</pcr_primer_p1>
		<pcr_primer_p2>TATCAATTCCATTCATTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>343</pcr_amplicon_size>
		<canonical_amplicon>ATCAGATCATCAATGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTATCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGAGTTTCGAAATTTCTGAACAGTTTTTTTTTTTGAAATTTCTGAAATGAATGGAATTGATA</canonical_amplicon>
		<polymorphic_amplicon>ATCAGATCATCAATGCTTACGGCATTTCCTCTAATAGAAGCCCACCCAAACTATCAATTTTGAGCTCAATTATCTCAATTCCTATAAAGGATATCAAAAATTGGTCAACAGATAAAATATTAGTGACATTATGATAAACAATTTTTTAGTTGACAAATGTTTTATATCTTGCATAGGAATTGAGATAACTGAGCTCAAAGTTGATAGTGTTGGAGCCATTCTATTACAAGTTTTATCGGTAATTAGGTCATAAATTTATTAGACTTCAAAACTAACAAAATTGAGTTTCRAAATTTCTGAACAGTTTTTTTTTTTGAAATTTCTGAAATGAATGGAATTGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37598</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>527191</contig_pos>
        <strand></strand>
        <context>AACAGAACAC[T/C]ACAGAACTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTCTGAATTTGTTTACCTCATCTTTGCTCACTGAATTTGGAACAGAACAC</left_flank>
        <right_flank>ACAGAACTTTCTGAAAAACAAGTATTTTTCAGAAAAAAACATTTCAGTTG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAGTTTTCAAAGGCGATTTAAATTTGTTAGGCCGAAAAACCGACGTCTTCGAGCGTCTGTTCTCCGCAGCAATCGGTGAGAGCTTCCATTCTGAAAAATTGCTAATGAAAATAATTTGTATTGAATATTAAACACCTTTTTGCTCGTTTTCATCTTGTTCTAATGCAGTGCTGTTGAGGTGTTTGCTAGATTCTTCGCCTTCGTAAAACGAGGAGACGTTGAATTCCATCTAGTTCTTAGCAATTGAATGGCTGAGAATTAAGAAGTATTTTTTTCACATTTAATACGAAAAATTTTCAGCGGAAACTAGTCGAAAGGACTCGGAAAAGAACTGAATGAAGCGCTGAAAAGTTTTAAGAAGTAGTGCGCGTCCTATTAAATGCCGCATCTGCATGGTGTTTACACAAAATCGCTGACCGTAGTTTTGAGGAAAATCCAAACCGGGTTCTCTGAATTTGTTTACCTCATCTTTGCTCACTGAATTTGGAACAGAACACTACAGAACTTTCTGAAAAACAAGTATTTTTCAGAAAAAAACATTTCAGTTGATGTGCAAAGTCATGGGGAGACTGTTTTTCTTTGGTTTCATGTAAGTTTTACCAAGAAATTTGAAATTCAAATATTTGAAAATTATTGTTCGTTTTCAGTGGTCTAGCGATTTCATGGGCTGCTCTCTACTACCGATATAGTGACGAAAAGAACACTTTGGCTAGAAAATTCCGACTAGACCCACCACCAGCGCTCGTTGGAAACTTATTCATCAATGCGGATCTTGAGAAGGCGACGCATATTTTGGATGGAAAGATTTCCGGACCAGAATCTATGGCTGTTGATGACGATGGTGCTATTTACGCTTCTGTTTATGATGCAAAAATCCTGAAAATCGTCAACGGACAAGTTGTGAGCAAAGCAGCGTACTCTGAGAAATCTAAATTCTTTCCGGATTGTGGAAGTTTCGATACAGAGCCAGAATGTGGAAGACCACTCGGAATTCGTCA</canonical>
            <polymorphic>AACAGTTTTCAAAGGCGATTTAAATTTGTTAGGCCGAAAAACCGACGTCTTCGAGCGTCTGTTCTCCGCAGCAATCGGTGAGAGCTTCCATTCTGAAAAATTGCTAATGAAAATAATTTGTATTGAATATTAAACACCTTTTTGCTCGTTTTCATCTTGTTCTAATGCAGTGCTGTTGAGGTGTTTGCTAGATTCTTCGCCTTCGTAAAACGAGGAGACGTTGAATTCCATCTAGTTCTTAGCAATTGAATGGCTGAGAATTAAGAAGTATTTTTTTCACATTTAATACGAAAAATTTTCAGCGGAAACTAGTCGAAAGGACTCGGAAAAGAACTGAATGAAGCGCTGAAAAGTTTTAAGAAGTAGTGCGCGTCCTATTAAATGCCGCATCTGCATGGTGTTTACACAAAATCGCTGACCGTAGTTTTGAGGAAAATCCAAACCGGGTTCTCTGAATTTGTTTACCTCATCTTTGCTCACTGAATTTGGAACAGAACACYACAGAACTTTCTGAAAAACAAGTATTTTTCAGAAAAAAACATTTCAGTTGATGTGCAAAGTCATGGGGAGACTGTTTTTCTTTGGTTTCATGTAAGTTTTACCAAGAAATTTGAAATTCAAATATTTGAAAATTATTGTTCGTTTTCAGTGGTCTAGCGATTTCATGGGCTGCTCTCTACTACCGATATAGTGACGAAAAGAACACTTTGGCTAGAAAATTCCGACTAGACCCACCACCAGCGCTCGTTGGAAACTTATTCATCAATGCGGATCTTGAGAAGGCGACGCATATTTTGGATGGAAAGATTTCCGGACCAGAATCTATGGCTGTTGATGACGATGGTGCTATTTACGCTTCTGTTTATGATGCAAAAATCCTGAAAATCGTCAACGGACAAGTTGTGAGCAAAGCAGCGTACTCTGAGAAATCTAAATTCTTTCCGGATTGTGGAAGTTTCGATACAGAGCCAGAATGTGGAAGACCACTCGGAATTCGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCGTAGTTTTGAGGAAAATC</pcr_primer_p1>
		<pcr_primer_p2>CATGAAATCGCTAGACCACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCGTAGTTTTGAGGAAAATCCAAACCGGGTTCTCTGAATTTGTTTACCTCATCTTTGCTCACTGAATTTGGAACAGAACACTACAGAACTTTCTGAAAAACAAGTATTTTTCAGAAAAAAACATTTCAGTTGATGTGCAAAGTCATGGGGAGACTGTTTTTCTTTGGTTTCATGTAAGTTTTACCAAGAAATTTGAAATTCAAATATTTGAAAATTATTGTTCGTTTTCAGTGGTCTAGCGATTTCATG</canonical_amplicon>
		<polymorphic_amplicon>ACCGTAGTTTTGAGGAAAATCCAAACCGGGTTCTCTGAATTTGTTTACCTCATCTTTGCTCACTGAATTTGGAACAGAACACYACAGAACTTTCTGAAAAACAAGTATTTTTCAGAAAAAAACATTTCAGTTGATGTGCAAAGTCATGGGGAGACTGTTTTTCTTTGGTTTCATGTAAGTTTTACCAAGAAATTTGAAATTCAAATATTTGAAAATTATTGTTCGTTTTCAGTGGTCTAGCGATTTCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37599</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>527301</contig_pos>
        <strand></strand>
        <context>TACCAAGAAA[T/C]TTGAAATTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTCATGGGGAGACTGTTTTTCTTTGGTTTCATGTAAGTTTTACCAAGAAA</left_flank>
        <right_flank>TTGAAATTCAAATATTTGAAAATTATTGTTCGTTTTCAGTGGTCTAGCGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATAATTTGTATTGAATATTAAACACCTTTTTGCTCGTTTTCATCTTGTTCTAATGCAGTGCTGTTGAGGTGTTTGCTAGATTCTTCGCCTTCGTAAAACGAGGAGACGTTGAATTCCATCTAGTTCTTAGCAATTGAATGGCTGAGAATTAAGAAGTATTTTTTTCACATTTAATACGAAAAATTTTCAGCGGAAACTAGTCGAAAGGACTCGGAAAAGAACTGAATGAAGCGCTGAAAAGTTTTAAGAAGTAGTGCGCGTCCTATTAAATGCCGCATCTGCATGGTGTTTACACAAAATCGCTGACCGTAGTTTTGAGGAAAATCCAAACCGGGTTCTCTGAATTTGTTTACCTCATCTTTGCTCACTGAATTTGGAACAGAACACTACAGAACTTTCTGAAAAACAAGTATTTTTCAGAAAAAAACATTTCAGTTGATGTGCAAAGTCATGGGGAGACTGTTTTTCTTTGGTTTCATGTAAGTTTTACCAAGAAATTTGAAATTCAAATATTTGAAAATTATTGTTCGTTTTCAGTGGTCTAGCGATTTCATGGGCTGCTCTCTACTACCGATATAGTGACGAAAAGAACACTTTGGCTAGAAAATTCCGACTAGACCCACCACCAGCGCTCGTTGGAAACTTATTCATCAATGCGGATCTTGAGAAGGCGACGCATATTTTGGATGGAAAGATTTCCGGACCAGAATCTATGGCTGTTGATGACGATGGTGCTATTTACGCTTCTGTTTATGATGCAAAAATCCTGAAAATCGTCAACGGACAAGTTGTGAGCAAAGCAGCGTACTCTGAGAAATCTAAATTCTTTCCGGATTGTGGAAGTTTCGATACAGAGCCAGAATGTGGAAGACCACTCGGAATTCGTCAGTTGGTGAAGGGAAAACCAAAGTTCGTCGTTGCGGATGCCTATTTGGGAGTTTTCATCGTCGATTTTTCTAATGAACAGAATCGTATGTATTTGAATAAAATAAAAAATA</canonical>
            <polymorphic>AAATAATTTGTATTGAATATTAAACACCTTTTTGCTCGTTTTCATCTTGTTCTAATGCAGTGCTGTTGAGGTGTTTGCTAGATTCTTCGCCTTCGTAAAACGAGGAGACGTTGAATTCCATCTAGTTCTTAGCAATTGAATGGCTGAGAATTAAGAAGTATTTTTTTCACATTTAATACGAAAAATTTTCAGCGGAAACTAGTCGAAAGGACTCGGAAAAGAACTGAATGAAGCGCTGAAAAGTTTTAAGAAGTAGTGCGCGTCCTATTAAATGCCGCATCTGCATGGTGTTTACACAAAATCGCTGACCGTAGTTTTGAGGAAAATCCAAACCGGGTTCTCTGAATTTGTTTACCTCATCTTTGCTCACTGAATTTGGAACAGAACACTACAGAACTTTCTGAAAAACAAGTATTTTTCAGAAAAAAACATTTCAGTTGATGTGCAAAGTCATGGGGAGACTGTTTTTCTTTGGTTTCATGTAAGTTTTACCAAGAAAYTTGAAATTCAAATATTTGAAAATTATTGTTCGTTTTCAGTGGTCTAGCGATTTCATGGGCTGCTCTCTACTACCGATATAGTGACGAAAAGAACACTTTGGCTAGAAAATTCCGACTAGACCCACCACCAGCGCTCGTTGGAAACTTATTCATCAATGCGGATCTTGAGAAGGCGACGCATATTTTGGATGGAAAGATTTCCGGACCAGAATCTATGGCTGTTGATGACGATGGTGCTATTTACGCTTCTGTTTATGATGCAAAAATCCTGAAAATCGTCAACGGACAAGTTGTGAGCAAAGCAGCGTACTCTGAGAAATCTAAATTCTTTCCGGATTGTGGAAGTTTCGATACAGAGCCAGAATGTGGAAGACCACTCGGAATTCGTCAGTTGGTGAAGGGAAAACCAAAGTTCGTCGTTGCGGATGCCTATTTGGGAGTTTTCATCGTCGATTTTTCTAATGAACAGAATCGTATGTATTTGAATAAAATAAAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>216 161 125 119 113 103 70 58 28 7</canonical_bands>
                <polymorphic_bands>216 161 132 119 113 103 70 58 28</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>216 161 125 119 109 87 58 35 28 20 16 15 7 4</canonical_bands>
                <polymorphic_bands>216 161 132 119 109 87 58 35 28 20 16 15 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCACTGAATTTGGAACAGAA</pcr_primer_p1>
		<pcr_primer_p2>GGAATTTTCTAGCCAAAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTCACTGAATTTGGAACAGAACACTACAGAACTTTCTGAAAAACAAGTATTTTTCAGAAAAAAACATTTCAGTTGATGTGCAAAGTCATGGGGAGACTGTTTTTCTTTGGTTTCATGTAAGTTTTACCAAGAAATTTGAAATTCAAATATTTGAAAATTATTGTTCGTTTTCAGTGGTCTAGCGATTTCATGGGCTGCTCTCTACTACCGATATAGTGACGAAAAGAACACTTTGGCTAGAAAATTCC</canonical_amplicon>
		<polymorphic_amplicon>CTCACTGAATTTGGAACAGAACACTACAGAACTTTCTGAAAAACAAGTATTTTTCAGAAAAAAACATTTCAGTTGATGTGCAAAGTCATGGGGAGACTGTTTTTCTTTGGTTTCATGTAAGTTTTACCAAGAAAYTTGAAATTCAAATATTTGAAAATTATTGTTCGTTTTCAGTGGTCTAGCGATTTCATGGGCTGCTCTCTACTACCGATATAGTGACGAAAAGAACACTTTGGCTAGAAAATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37600</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>527319</contig_pos>
        <strand></strand>
        <context>TCAAATATTT[G/T]AAAATTATTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCTTTGGTTTCATGTAAGTTTTACCAAGAAATTTGAAATTCAAATATTT</left_flank>
        <right_flank>AAAATTATTGTTCGTTTTCAGTGGTCTAGCGATTTCATGGGCTGCTCTCT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAAACACCTTTTTGCTCGTTTTCATCTTGTTCTAATGCAGTGCTGTTGAGGTGTTTGCTAGATTCTTCGCCTTCGTAAAACGAGGAGACGTTGAATTCCATCTAGTTCTTAGCAATTGAATGGCTGAGAATTAAGAAGTATTTTTTTCACATTTAATACGAAAAATTTTCAGCGGAAACTAGTCGAAAGGACTCGGAAAAGAACTGAATGAAGCGCTGAAAAGTTTTAAGAAGTAGTGCGCGTCCTATTAAATGCCGCATCTGCATGGTGTTTACACAAAATCGCTGACCGTAGTTTTGAGGAAAATCCAAACCGGGTTCTCTGAATTTGTTTACCTCATCTTTGCTCACTGAATTTGGAACAGAACACTACAGAACTTTCTGAAAAACAAGTATTTTTCAGAAAAAAACATTTCAGTTGATGTGCAAAGTCATGGGGAGACTGTTTTTCTTTGGTTTCATGTAAGTTTTACCAAGAAATTTGAAATTCAAATATTTGAAAATTATTGTTCGTTTTCAGTGGTCTAGCGATTTCATGGGCTGCTCTCTACTACCGATATAGTGACGAAAAGAACACTTTGGCTAGAAAATTCCGACTAGACCCACCACCAGCGCTCGTTGGAAACTTATTCATCAATGCGGATCTTGAGAAGGCGACGCATATTTTGGATGGAAAGATTTCCGGACCAGAATCTATGGCTGTTGATGACGATGGTGCTATTTACGCTTCTGTTTATGATGCAAAAATCCTGAAAATCGTCAACGGACAAGTTGTGAGCAAAGCAGCGTACTCTGAGAAATCTAAATTCTTTCCGGATTGTGGAAGTTTCGATACAGAGCCAGAATGTGGAAGACCACTCGGAATTCGTCAGTTGGTGAAGGGAAAACCAAAGTTCGTCGTTGCGGATGCCTATTTGGGAGTTTTCATCGTCGATTTTTCTAATGAACAGAATCGTATGTATTTGAATAAAATAAAAAATATAAAATAAGAAAAATTTA</canonical>
            <polymorphic>ATTAAACACCTTTTTGCTCGTTTTCATCTTGTTCTAATGCAGTGCTGTTGAGGTGTTTGCTAGATTCTTCGCCTTCGTAAAACGAGGAGACGTTGAATTCCATCTAGTTCTTAGCAATTGAATGGCTGAGAATTAAGAAGTATTTTTTTCACATTTAATACGAAAAATTTTCAGCGGAAACTAGTCGAAAGGACTCGGAAAAGAACTGAATGAAGCGCTGAAAAGTTTTAAGAAGTAGTGCGCGTCCTATTAAATGCCGCATCTGCATGGTGTTTACACAAAATCGCTGACCGTAGTTTTGAGGAAAATCCAAACCGGGTTCTCTGAATTTGTTTACCTCATCTTTGCTCACTGAATTTGGAACAGAACACTACAGAACTTTCTGAAAAACAAGTATTTTTCAGAAAAAAACATTTCAGTTGATGTGCAAAGTCATGGGGAGACTGTTTTTCTTTGGTTTCATGTAAGTTTTACCAAGAAATTTGAAATTCAAATATTTKAAAATTATTGTTCGTTTTCAGTGGTCTAGCGATTTCATGGGCTGCTCTCTACTACCGATATAGTGACGAAAAGAACACTTTGGCTAGAAAATTCCGACTAGACCCACCACCAGCGCTCGTTGGAAACTTATTCATCAATGCGGATCTTGAGAAGGCGACGCATATTTTGGATGGAAAGATTTCCGGACCAGAATCTATGGCTGTTGATGACGATGGTGCTATTTACGCTTCTGTTTATGATGCAAAAATCCTGAAAATCGTCAACGGACAAGTTGTGAGCAAAGCAGCGTACTCTGAGAAATCTAAATTCTTTCCGGATTGTGGAAGTTTCGATACAGAGCCAGAATGTGGAAGACCACTCGGAATTCGTCAGTTGGTGAAGGGAAAACCAAAGTTCGTCGTTGCGGATGCCTATTTGGGAGTTTTCATCGTCGATTTTTCTAATGAACAGAATCGTATGTATTTGAATAAAATAAAAAATATAAAATAAGAAAAATTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGACTGTTTTTCTTTGGTTTCAT</pcr_primer_p1>
		<pcr_primer_p2>AAATCTTTCCATCCAAAATATG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AGACTGTTTTTCTTTGGTTTCATGTAAGTTTTACCAAGAAATTTGAAATTCAAATATTTGAAAATTATTGTTCGTTTTCAGTGGTCTAGCGATTTCATGGGCTGCTCTCTACTACCGATATAGTGACGAAAAGAACACTTTGGCTAGAAAATTCCGACTAGACCCACCACCAGCGCTCGTTGGAAACTTATTCATCAATGCGGATCTTGAGAAGGCGACGCATATTTTGGATGGAAAGATTT</canonical_amplicon>
		<polymorphic_amplicon>AGACTGTTTTTCTTTGGTTTCATGTAAGTTTTACCAAGAAATTTGAAATTCAAATATTTKAAAATTATTGTTCGTTTTCAGTGGTCTAGCGATTTCATGGGCTGCTCTCTACTACCGATATAGTGACGAAAAGAACACTTTGGCTAGAAAATTCCGACTAGACCCACCACCAGCGCTCGTTGGAAACTTATTCATCAATGCGGATCTTGAGAAGGCGACGCATATTTTGGATGGAAAGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37601</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>527392</contig_pos>
        <strand></strand>
        <context>GTGACGAAAA[G/A]AACACTTTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGTCTAGCGATTTCATGGGCTGCTCTCTACTACCGATATAGTGACGAAAA</left_flank>
        <right_flank>AACACTTTGGCTAGAAAATTCCGACTAGACCCACCACCAGCGCTCGTTGG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGTAAAACGAGGAGACGTTGAATTCCATCTAGTTCTTAGCAATTGAATGGCTGAGAATTAAGAAGTATTTTTTTCACATTTAATACGAAAAATTTTCAGCGGAAACTAGTCGAAAGGACTCGGAAAAGAACTGAATGAAGCGCTGAAAAGTTTTAAGAAGTAGTGCGCGTCCTATTAAATGCCGCATCTGCATGGTGTTTACACAAAATCGCTGACCGTAGTTTTGAGGAAAATCCAAACCGGGTTCTCTGAATTTGTTTACCTCATCTTTGCTCACTGAATTTGGAACAGAACACTACAGAACTTTCTGAAAAACAAGTATTTTTCAGAAAAAAACATTTCAGTTGATGTGCAAAGTCATGGGGAGACTGTTTTTCTTTGGTTTCATGTAAGTTTTACCAAGAAATTTGAAATTCAAATATTTGAAAATTATTGTTCGTTTTCAGTGGTCTAGCGATTTCATGGGCTGCTCTCTACTACCGATATAGTGACGAAAAGAACACTTTGGCTAGAAAATTCCGACTAGACCCACCACCAGCGCTCGTTGGAAACTTATTCATCAATGCGGATCTTGAGAAGGCGACGCATATTTTGGATGGAAAGATTTCCGGACCAGAATCTATGGCTGTTGATGACGATGGTGCTATTTACGCTTCTGTTTATGATGCAAAAATCCTGAAAATCGTCAACGGACAAGTTGTGAGCAAAGCAGCGTACTCTGAGAAATCTAAATTCTTTCCGGATTGTGGAAGTTTCGATACAGAGCCAGAATGTGGAAGACCACTCGGAATTCGTCAGTTGGTGAAGGGAAAACCAAAGTTCGTCGTTGCGGATGCCTATTTGGGAGTTTTCATCGTCGATTTTTCTAATGAACAGAATCGTATGTATTTGAATAAAATAAAAAATATAAAATAAGAAAAATTTACAGCAACCTCCACCCAAATCCTCGACTCTCGTGTTCCAATCGATGGATTCAAGCCCAGATTCCTCAACGATTT</canonical>
            <polymorphic>TTCGTAAAACGAGGAGACGTTGAATTCCATCTAGTTCTTAGCAATTGAATGGCTGAGAATTAAGAAGTATTTTTTTCACATTTAATACGAAAAATTTTCAGCGGAAACTAGTCGAAAGGACTCGGAAAAGAACTGAATGAAGCGCTGAAAAGTTTTAAGAAGTAGTGCGCGTCCTATTAAATGCCGCATCTGCATGGTGTTTACACAAAATCGCTGACCGTAGTTTTGAGGAAAATCCAAACCGGGTTCTCTGAATTTGTTTACCTCATCTTTGCTCACTGAATTTGGAACAGAACACTACAGAACTTTCTGAAAAACAAGTATTTTTCAGAAAAAAACATTTCAGTTGATGTGCAAAGTCATGGGGAGACTGTTTTTCTTTGGTTTCATGTAAGTTTTACCAAGAAATTTGAAATTCAAATATTTGAAAATTATTGTTCGTTTTCAGTGGTCTAGCGATTTCATGGGCTGCTCTCTACTACCGATATAGTGACGAAAARAACACTTTGGCTAGAAAATTCCGACTAGACCCACCACCAGCGCTCGTTGGAAACTTATTCATCAATGCGGATCTTGAGAAGGCGACGCATATTTTGGATGGAAAGATTTCCGGACCAGAATCTATGGCTGTTGATGACGATGGTGCTATTTACGCTTCTGTTTATGATGCAAAAATCCTGAAAATCGTCAACGGACAAGTTGTGAGCAAAGCAGCGTACTCTGAGAAATCTAAATTCTTTCCGGATTGTGGAAGTTTCGATACAGAGCCAGAATGTGGAAGACCACTCGGAATTCGTCAGTTGGTGAAGGGAAAACCAAAGTTCGTCGTTGCGGATGCCTATTTGGGAGTTTTCATCGTCGATTTTTCTAATGAACAGAATCGTATGTATTTGAATAAAATAAAAAATATAAAATAAGAAAAATTTACAGCAACCTCCACCCAAATCCTCGACTCTCGTGTTCCAATCGATGGATTCAAGCCCAGATTCCTCAACGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTATTGTTCGTTTTCAGTG</pcr_primer_p1>
		<pcr_primer_p2>GATTTTTGCATCATAAACAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATTATTGTTCGTTTTCAGTGGTCTAGCGATTTCATGGGCTGCTCTCTACTACCGATATAGTGACGAAAAGAACACTTTGGCTAGAAAATTCCGACTAGACCCACCACCAGCGCTCGTTGGAAACTTATTCATCAATGCGGATCTTGAGAAGGCGACGCATATTTTGGATGGAAAGATTTCCGGACCAGAATCTATGGCTGTTGATGACGATGGTGCTATTTACGCTTCTGTTTATGATGCAAAAATC</canonical_amplicon>
		<polymorphic_amplicon>AAAATTATTGTTCGTTTTCAGTGGTCTAGCGATTTCATGGGCTGCTCTCTACTACCGATATAGTGACGAAAARAACACTTTGGCTAGAAAATTCCGACTAGACCCACCACCAGCGCTCGTTGGAAACTTATTCATCAATGCGGATCTTGAGAAGGCGACGCATATTTTGGATGGAAAGATTTCCGGACCAGAATCTATGGCTGTTGATGACGATGGTGCTATTTACGCTTCTGTTTATGATGCAAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37602</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>535327</contig_pos>
        <strand>+</strand>
        <context>GGAGACGTGG[A/C]TTTATATGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATGTATGACCCAAATGGAACAGGGAAGAAAAGATGATTTGGAGACGTGG</left_flank>
        <right_flank>TTTATATGGTGGCTGATTTGTTGGATGAAAGAAGAGGAATGCCGTGGAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGAATCTCAAGTTAGTTTTAGAACATTTGAACATGGTGACCTAAAATTTGCAAACTGAGTTTCCTAGGCCACCAATTTTTACAGTTCGAATGTTTGAACAACACTTCAGTAACTGTTCGAACGAATTTTTTCAGTTTGTCGTAATGGGTCTAGTGGGACCTTCCCTCGAAGACATTCGCCGCAAGTACATCCTCCGAACATTCACCAAATCAACCGCCTTCTACGTTGCCATCGAAACGGTGACAGCAATTCGTGATCTTCATTCACTGGGATACCTTCATCGTGACATTAAACCAGCCAACTATGCAGTTGGGATCGGATCCGACGAAGCGACAGTTTATATGCTTGACTTTGGAATCGCAAAATTGTATGTAAACGAGAATGGAGATCACAAAGTGAAGAGAAAGAAAGTCAAGTTTTTGGGAACACTGAGATATGCATGCAGAGCATGTATGACCCAAATGGAACAGGGAAGAAAAGATGATTTGGAGACGTGGCTTTATATGGTGGCTGATTTGTTGGATGAAAGAAGAGGAATGCCGTGGAGGAAACATGCCGAACTAAAGACGATTCTCAAGTTAAAGGATGAGTTTTTCAAAGAATGTGAGTTTGTTTTTTGAGTTTCTGTGGCCCCAATTTTGAGCAAATTTATCTCAATTCCTGTGACATAATATCAGAAACATTTTATCAGTTTACCGCTTTTTGATATCTGTCACAGGGACCGAGATAAATGAGCTCAAACTTGACAGTGTAGGTGCCCTTCTATTACAGGTTTTATGGTAACTGTAAAATTTTCAATTTCAGTCGACGCCCAACCATTTAATAAAACTCTAAAACGCTTCAAAGGACTATTCGACTACATTGACAAAATGCAATACGAAACGACACCTGACTACGAGTATATTCTGACATCTTGAAGACGTGTGCAAGCGACGTCGGTGCGAAACTCAATGGAAAATGGGATTGGATTGGGCAATTGAAGAAGAAGGCGTTCGAAA</canonical>
            <polymorphic>GATGAATCTCAAGTTAGTTTTAGAACATTTGAACATGGTGACCTAAAATTTGCAAACTGAGTTTCCTAGGCCACCAATTTTTACAGTTCGAATGTTTGAACAACACTTCAGTAACTGTTCGAACGAATTTTTTCAGTTTGTCGTAATGGGTCTAGTGGGACCTTCCCTCGAAGACATTCGCCGCAAGTACATCCTCCGAACATTCACCAAATCAACCGCCTTCTACGTTGCCATCGAAACGGTGACAGCAATTCGTGATCTTCATTCACTGGGATACCTTCATCGTGACATTAAACCAGCCAACTATGCAGTTGGGATCGGATCCGACGAAGCGACAGTTTATATGCTTGACTTTGGAATCGCAAAATTGTATGTAAACGAGAATGGAGATCACAAAGTGAAGAGAAAGAAAGTCAAGTTTTTGGGAACACTGAGATATGCATGCAGAGCATGTATGACCCAAATGGAACAGGGAAGAAAAGATGATTTGGAGACGTGGMTTTATATGGTGGCTGATTTGTTGGATGAAAGAAGAGGAATGCCGTGGAGGAAACATGCCGAACTAAAGACGATTCTCAAGTTAAAGGATGAGTTTTTCAAAGAATGTGAGTTTGTTTTTTGAGTTTCTGTGGCCCCAATTTTGAGCAAATTTATCTCAATTCCTGTGACATAATATCAGAAACATTTTATCAGTTTACCGCTTTTTGATATCTGTCACAGGGACCGAGATAAATGAGCTCAAACTTGACAGTGTAGGTGCCCTTCTATTACAGGTTTTATGGTAACTGTAAAATTTTCAATTTCAGTCGACGCCCAACCATTTAATAAAACTCTAAAACGCTTCAAAGGACTATTCGACTACATTGACAAAATGCAATACGAAACGACACCTGACTACGAGTATATTCTGACATCTTGAAGACGTGTGCAAGCGACGTCGGTGCGAAACTCAATGGAAAATGGGATTGGATTGGGCAATTGAAGAAGAAGGCGTTCGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>263 229 200 120 105 70 13</canonical_bands>
                <polymorphic_bands>263 229 213 120 105 70</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAAAATTGTATGTAAACGAGAA</pcr_primer_p1>
		<pcr_primer_p2>CTCACATTCTTTGAAAAACTCAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCAAAATTGTATGTAAACGAGAATGGAGATCACAAAGTGAAGAGAAAGAAAGTCAAGTTTTTGGGAACACTGAGATATGCATGCAGAGCATGTATGACCCAAATGGAACAGGGAAGAAAAGATGATTTGGAGACGTGGCTTTATATGGTGGCTGATTTGTTGGATGAAAGAAGAGGAATGCCGTGGAGGAAACATGCCGAACTAAAGACGATTCTCAAGTTAAAGGATGAGTTTTTCAAAGAATGTGAG</canonical_amplicon>
		<polymorphic_amplicon>GCAAAATTGTATGTAAACGAGAATGGAGATCACAAAGTGAAGAGAAAGAAAGTCAAGTTTTTGGGAACACTGAGATATGCATGCAGAGCATGTATGACCCAAATGGAACAGGGAAGAAAAGATGATTTGGAGACGTGGMTTTATATGGTGGCTGATTTGTTGGATGAAAGAAGAGGAATGCCGTGGAGGAAACATGCCGAACTAAAGACGATTCTCAAGTTAAAGGATGAGTTTTTCAAAGAATGTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37603</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>535410</contig_pos>
        <strand>+</strand>
        <context>TTCTCAAGTT[A/G]AAGGATGAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAGGAATGCCGTGGAGGAAACATGCCGAACTAAAGACGATTCTCAAGTT</left_flank>
        <right_flank>AAGGATGAGTTTTTCAAAGAATGTGAGTTTGTTTTTTGAGTTTCTGTGGC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTTCGAATGTTTGAACAACACTTCAGTAACTGTTCGAACGAATTTTTTCAGTTTGTCGTAATGGGTCTAGTGGGACCTTCCCTCGAAGACATTCGCCGCAAGTACATCCTCCGAACATTCACCAAATCAACCGCCTTCTACGTTGCCATCGAAACGGTGACAGCAATTCGTGATCTTCATTCACTGGGATACCTTCATCGTGACATTAAACCAGCCAACTATGCAGTTGGGATCGGATCCGACGAAGCGACAGTTTATATGCTTGACTTTGGAATCGCAAAATTGTATGTAAACGAGAATGGAGATCACAAAGTGAAGAGAAAGAAAGTCAAGTTTTTGGGAACACTGAGATATGCATGCAGAGCATGTATGACCCAAATGGAACAGGGAAGAAAAGATGATTTGGAGACGTGGCTTTATATGGTGGCTGATTTGTTGGATGAAAGAAGAGGAATGCCGTGGAGGAAACATGCCGAACTAAAGACGATTCTCAAGTTAAAGGATGAGTTTTTCAAAGAATGTGAGTTTGTTTTTTGAGTTTCTGTGGCCCCAATTTTGAGCAAATTTATCTCAATTCCTGTGACATAATATCAGAAACATTTTATCAGTTTACCGCTTTTTGATATCTGTCACAGGGACCGAGATAAATGAGCTCAAACTTGACAGTGTAGGTGCCCTTCTATTACAGGTTTTATGGTAACTGTAAAATTTTCAATTTCAGTCGACGCCCAACCATTTAATAAAACTCTAAAACGCTTCAAAGGACTATTCGACTACATTGACAAAATGCAATACGAAACGACACCTGACTACGAGTATATTCTGACATCTTGAAGACGTGTGCAAGCGACGTCGGTGCGAAACTCAATGGAAAATGGGATTGGATTGGGCAATTGAAGAAGAAGGCGTTCGAAAGTGAAAGTGATTCTGAGAAATCTGATAAGAAGGGTAGTGGAGATGATGATGAATAATCTGGAACTGGGAAGACTAATAATTTT</canonical>
            <polymorphic>CAGTTCGAATGTTTGAACAACACTTCAGTAACTGTTCGAACGAATTTTTTCAGTTTGTCGTAATGGGTCTAGTGGGACCTTCCCTCGAAGACATTCGCCGCAAGTACATCCTCCGAACATTCACCAAATCAACCGCCTTCTACGTTGCCATCGAAACGGTGACAGCAATTCGTGATCTTCATTCACTGGGATACCTTCATCGTGACATTAAACCAGCCAACTATGCAGTTGGGATCGGATCCGACGAAGCGACAGTTTATATGCTTGACTTTGGAATCGCAAAATTGTATGTAAACGAGAATGGAGATCACAAAGTGAAGAGAAAGAAAGTCAAGTTTTTGGGAACACTGAGATATGCATGCAGAGCATGTATGACCCAAATGGAACAGGGAAGAAAAGATGATTTGGAGACGTGGCTTTATATGGTGGCTGATTTGTTGGATGAAAGAAGAGGAATGCCGTGGAGGAAACATGCCGAACTAAAGACGATTCTCAAGTTRAAGGATGAGTTTTTCAAAGAATGTGAGTTTGTTTTTTGAGTTTCTGTGGCCCCAATTTTGAGCAAATTTATCTCAATTCCTGTGACATAATATCAGAAACATTTTATCAGTTTACCGCTTTTTGATATCTGTCACAGGGACCGAGATAAATGAGCTCAAACTTGACAGTGTAGGTGCCCTTCTATTACAGGTTTTATGGTAACTGTAAAATTTTCAATTTCAGTCGACGCCCAACCATTTAATAAAACTCTAAAACGCTTCAAAGGACTATTCGACTACATTGACAAAATGCAATACGAAACGACACCTGACTACGAGTATATTCTGACATCTTGAAGACGTGTGCAAGCGACGTCGGTGCGAAACTCAATGGAAAATGGGATTGGATTGGGCAATTGAAGAAGAAGGCGTTCGAAAGTGAAAGTGATTCTGAGAAATCTGATAAGAAGGGTAGTGGAGATGATGATGAATAATCTGGAACTGGGAAGACTAATAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>290 261 241 208</canonical_bands>
                <polymorphic_bands>531 261 208</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGATGAAAGAAGAGGAATG</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGCGTTTTAGAGTTTTATT</pcr_primer_p2>
		<pcr_amplicon_size>325</pcr_amplicon_size>
		<canonical_amplicon>TGGATGAAAGAAGAGGAATGCCGTGGAGGAAACATGCCGAACTAAAGACGATTCTCAAGTTAAAGGATGAGTTTTTCAAAGAATGTGAGTTTGTTTTTTGAGTTTCTGTGGCCCCAATTTTGAGCAAATTTATCTCAATTCCTGTGACATAATATCAGAAACATTTTATCAGTTTACCGCTTTTTGATATCTGTCACAGGGACCGAGATAAATGAGCTCAAACTTGACAGTGTAGGTGCCCTTCTATTACAGGTTTTATGGTAACTGTAAAATTTTCAATTTCAGTCGACGCCCAACCATTTAATAAAACTCTAAAACGCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TGGATGAAAGAAGAGGAATGCCGTGGAGGAAACATGCCGAACTAAAGACGATTCTCAAGTTRAAGGATGAGTTTTTCAAAGAATGTGAGTTTGTTTTTTGAGTTTCTGTGGCCCCAATTTTGAGCAAATTTATCTCAATTCCTGTGACATAATATCAGAAACATTTTATCAGTTTACCGCTTTTTGATATCTGTCACAGGGACCGAGATAAATGAGCTCAAACTTGACAGTGTAGGTGCCCTTCTATTACAGGTTTTATGGTAACTGTAAAATTTTCAATTTCAGTCGACGCCCAACCATTTAATAAAACTCTAAAACGCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37604</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>535496</contig_pos>
        <strand></strand>
        <context>attcctgtga[C/A]ataatatcag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTGAGTTTCTGTGGCCCCAATTTTGAGCAAATTTATCTCAATTCCTGTGA</left_flank>
        <right_flank>ATAATATCAGAAACATTTTATCAGTTTACCGCTTTTTGATATCTGTCACA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGACATTCGCCGCAAGTACATCCTCCGAACATTCACCAAATCAACCGCCTTCTACGTTGCCATCGAAACGGTGACAGCAATTCGTGATCTTCATTCACTGGGATACCTTCATCGTGACATTAAACCAGCCAACTATGCAGTTGGGATCGGATCCGACGAAGCGACAGTTTATATGCTTGACTTTGGAATCGCAAAATTGTATGTAAACGAGAATGGAGATCACAAAGTGAAGAGAAAGAAAGTCAAGTTTTTGGGAACACTGAGATATGCATGCAGAGCATGTATGACCCAAATGGAACAGGGAAGAAAAGATGATTTGGAGACGTGGCTTTATATGGTGGCTGATTTGTTGGATGAAAGAAGAGGAATGCCGTGGAGGAAACATGCCGAACTAAAGACGATTCTCAAGTTAAAGGATGAGTTTTTCAAAGAATGTGAGTTTGTTTTTTGAGTTTCTGTGGCCCCAATTTTGAGCAAATTTATCTCAATTCCTGTGACATAATATCAGAAACATTTTATCAGTTTACCGCTTTTTGATATCTGTCACAGGGACCGAGATAAATGAGCTCAAACTTGACAGTGTAGGTGCCCTTCTATTACAGGTTTTATGGTAACTGTAAAATTTTCAATTTCAGTCGACGCCCAACCATTTAATAAAACTCTAAAACGCTTCAAAGGACTATTCGACTACATTGACAAAATGCAATACGAAACGACACCTGACTACGAGTATATTCTGACATCTTGAAGACGTGTGCAAGCGACGTCGGTGCGAAACTCAATGGAAAATGGGATTGGATTGGGCAATTGAAGAAGAAGGCGTTCGAAAGTGAAAGTGATTCTGAGAAATCTGATAAGAAGGGTAGTGGAGATGATGATGAATAATCTGGAACTGGGAAGACTAATAATTTTTGAATGTGTGAACTAATTCAAATGAATAAACTTGATTATTAATTTGAAAGTTCTTAAAAAAGAAATCTTAAAAAACTACAAAAAAT</canonical>
            <polymorphic>GAAGACATTCGCCGCAAGTACATCCTCCGAACATTCACCAAATCAACCGCCTTCTACGTTGCCATCGAAACGGTGACAGCAATTCGTGATCTTCATTCACTGGGATACCTTCATCGTGACATTAAACCAGCCAACTATGCAGTTGGGATCGGATCCGACGAAGCGACAGTTTATATGCTTGACTTTGGAATCGCAAAATTGTATGTAAACGAGAATGGAGATCACAAAGTGAAGAGAAAGAAAGTCAAGTTTTTGGGAACACTGAGATATGCATGCAGAGCATGTATGACCCAAATGGAACAGGGAAGAAAAGATGATTTGGAGACGTGGCTTTATATGGTGGCTGATTTGTTGGATGAAAGAAGAGGAATGCCGTGGAGGAAACATGCCGAACTAAAGACGATTCTCAAGTTAAAGGATGAGTTTTTCAAAGAATGTGAGTTTGTTTTTTGAGTTTCTGTGGCCCCAATTTTGAGCAAATTTATCTCAATTCCTGTGAMATAATATCAGAAACATTTTATCAGTTTACCGCTTTTTGATATCTGTCACAGGGACCGAGATAAATGAGCTCAAACTTGACAGTGTAGGTGCCCTTCTATTACAGGTTTTATGGTAACTGTAAAATTTTCAATTTCAGTCGACGCCCAACCATTTAATAAAACTCTAAAACGCTTCAAAGGACTATTCGACTACATTGACAAAATGCAATACGAAACGACACCTGACTACGAGTATATTCTGACATCTTGAAGACGTGTGCAAGCGACGTCGGTGCGAAACTCAATGGAAAATGGGATTGGATTGGGCAATTGAAGAAGAAGGCGTTCGAAAGTGAAAGTGATTCTGAGAAATCTGATAAGAAGGGTAGTGGAGATGATGATGAATAATCTGGAACTGGGAAGACTAATAATTTTTGAATGTGTGAACTAATTCAAATGAATAAACTTGATTATTAATTTGAAAGTTCTTAAAAAAGAAATCTTAAAAAACTACAAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>388 380 72 68 49 43</canonical_bands>
                <polymorphic_bands>429 388 72 68 43</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>456 380 72 49 43</canonical_bands>
                <polymorphic_bands>456 429 72 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAAGAATGTGAGTTTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGCGTTTTAGAGTTTTATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAAAGAATGTGAGTTTGTTTTTTGAGTTTCTGTGGCCCCAATTTTGAGCAAATTTATCTCAATTCCTGTGACATAATATCAGAAACATTTTATCAGTTTACCGCTTTTTGATATCTGTCACAGGGACCGAGATAAATGAGCTCAAACTTGACAGTGTAGGTGCCCTTCTATTACAGGTTTTATGGTAACTGTAAAATTTTCAATTTCAGTCGACGCCCAACCATTTAATAAAACTCTAAAACGCTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TCAAAGAATGTGAGTTTGTTTTTTGAGTTTCTGTGGCCCCAATTTTGAGCAAATTTATCTCAATTCCTGTGAMATAATATCAGAAACATTTTATCAGTTTACCGCTTTTTGATATCTGTCACAGGGACCGAGATAAATGAGCTCAAACTTGACAGTGTAGGTGCCCTTCTATTACAGGTTTTATGGTAACTGTAAAATTTTCAATTTCAGTCGACGCCCAACCATTTAATAAAACTCTAAAACGCTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37605</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>535631</contig_pos>
        <strand>+</strand>
        <context>TTTTCAATTT[C/T]AGTCGACGCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGGTGCCCTTCTATTACAGGTTTTATGGTAACTGTAAAATTTTCAATTT</left_flank>
        <right_flank>AGTCGACGCCCAACCATTTAATAAAACTCTAAAACGCTTCAAAGGACTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGCAGTTGGGATCGGATCCGACGAAGCGACAGTTTATATGCTTGACTTTGGAATCGCAAAATTGTATGTAAACGAGAATGGAGATCACAAAGTGAAGAGAAAGAAAGTCAAGTTTTTGGGAACACTGAGATATGCATGCAGAGCATGTATGACCCAAATGGAACAGGGAAGAAAAGATGATTTGGAGACGTGGCTTTATATGGTGGCTGATTTGTTGGATGAAAGAAGAGGAATGCCGTGGAGGAAACATGCCGAACTAAAGACGATTCTCAAGTTAAAGGATGAGTTTTTCAAAGAATGTGAGTTTGTTTTTTGAGTTTCTGTGGCCCCAATTTTGAGCAAATTTATCTCAATTCCTGTGACATAATATCAGAAACATTTTATCAGTTTACCGCTTTTTGATATCTGTCACAGGGACCGAGATAAATGAGCTCAAACTTGACAGTGTAGGTGCCCTTCTATTACAGGTTTTATGGTAACTGTAAAATTTTCAATTTCAGTCGACGCCCAACCATTTAATAAAACTCTAAAACGCTTCAAAGGACTATTCGACTACATTGACAAAATGCAATACGAAACGACACCTGACTACGAGTATATTCTGACATCTTGAAGACGTGTGCAAGCGACGTCGGTGCGAAACTCAATGGAAAATGGGATTGGATTGGGCAATTGAAGAAGAAGGCGTTCGAAAGTGAAAGTGATTCTGAGAAATCTGATAAGAAGGGTAGTGGAGATGATGATGAATAATCTGGAACTGGGAAGACTAATAATTTTTGAATGTGTGAACTAATTCAAATGAATAAACTTGATTATTAATTTGAAAGTTCTTAAAAAAGAAATCTTAAAAAACTACAAAAAATCCAAAAATTCTGAAACTCCTAACAGCCAAAAAATTCTGGATTCTCAAAAAAATTCAAACATTCTGAAAGTCTAAAAACATACAGGTTCAGAATCTCAGAATCTCAGAATCTCAGAGTTTCAGAACCTCAGAATCT</canonical>
            <polymorphic>TATGCAGTTGGGATCGGATCCGACGAAGCGACAGTTTATATGCTTGACTTTGGAATCGCAAAATTGTATGTAAACGAGAATGGAGATCACAAAGTGAAGAGAAAGAAAGTCAAGTTTTTGGGAACACTGAGATATGCATGCAGAGCATGTATGACCCAAATGGAACAGGGAAGAAAAGATGATTTGGAGACGTGGCTTTATATGGTGGCTGATTTGTTGGATGAAAGAAGAGGAATGCCGTGGAGGAAACATGCCGAACTAAAGACGATTCTCAAGTTAAAGGATGAGTTTTTCAAAGAATGTGAGTTTGTTTTTTGAGTTTCTGTGGCCCCAATTTTGAGCAAATTTATCTCAATTCCTGTGACATAATATCAGAAACATTTTATCAGTTTACCGCTTTTTGATATCTGTCACAGGGACCGAGATAAATGAGCTCAAACTTGACAGTGTAGGTGCCCTTCTATTACAGGTTTTATGGTAACTGTAAAATTTTCAATTTYAGTCGACGCCCAACCATTTAATAAAACTCTAAAACGCTTCAAAGGACTATTCGACTACATTGACAAAATGCAATACGAAACGACACCTGACTACGAGTATATTCTGACATCTTGAAGACGTGTGCAAGCGACGTCGGTGCGAAACTCAATGGAAAATGGGATTGGATTGGGCAATTGAAGAAGAAGGCGTTCGAAAGTGAAAGTGATTCTGAGAAATCTGATAAGAAGGGTAGTGGAGATGATGATGAATAATCTGGAACTGGGAAGACTAATAATTTTTGAATGTGTGAACTAATTCAAATGAATAAACTTGATTATTAATTTGAAAGTTCTTAAAAAAGAAATCTTAAAAAACTACAAAAAATCCAAAAATTCTGAAACTCCTAACAGCCAAAAAATTCTGGATTCTCAAAAAAATTCAAACATTCTGAAAGTCTAAAAACATACAGGTTCAGAATCTCAGAATCTCAGAATCTCAGAGTTTCAGAACCTCAGAATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAGAATGTGAGTTTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTAGTCGAATAGTCCTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>TCAAAGAATGTGAGTTTGTTTTTTGAGTTTCTGTGGCCCCAATTTTGAGCAAATTTATCTCAATTCCTGTGACATAATATCAGAAACATTTTATCAGTTTACCGCTTTTTGATATCTGTCACAGGGACCGAGATAAATGAGCTCAAACTTGACAGTGTAGGTGCCCTTCTATTACAGGTTTTATGGTAACTGTAAAATTTTCAATTTCAGTCGACGCCCAACCATTTAATAAAACTCTAAAACGCTTCAAAGGACTATTCGACTACAT</canonical_amplicon>
		<polymorphic_amplicon>TCAAAGAATGTGAGTTTGTTTTTTGAGTTTCTGTGGCCCCAATTTTGAGCAAATTTATCTCAATTCCTGTGACATAATATCAGAAACATTTTATCAGTTTACCGCTTTTTGATATCTGTCACAGGGACCGAGATAAATGAGCTCAAACTTGACAGTGTAGGTGCCCTTCTATTACAGGTTTTATGGTAACTGTAAAATTTTCAATTTYAGTCGACGCCCAACCATTTAATAAAACTCTAAAACGCTTCAAAGGACTATTCGACTACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37606</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>535692</contig_pos>
        <strand>+</strand>
        <context>TCGACTACAT[C/T]GACAAAATGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAACCATTTAATAAAACTCTAAAACGCTTCAAAGGACTATTCGACTACAT</left_flank>
        <right_flank>GACAAAATGCAATACGAAACGACACCTGACTACGAGTATATTCTGACATC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGTATGTAAACGAGAATGGAGATCACAAAGTGAAGAGAAAGAAAGTCAAGTTTTTGGGAACACTGAGATATGCATGCAGAGCATGTATGACCCAAATGGAACAGGGAAGAAAAGATGATTTGGAGACGTGGCTTTATATGGTGGCTGATTTGTTGGATGAAAGAAGAGGAATGCCGTGGAGGAAACATGCCGAACTAAAGACGATTCTCAAGTTAAAGGATGAGTTTTTCAAAGAATGTGAGTTTGTTTTTTGAGTTTCTGTGGCCCCAATTTTGAGCAAATTTATCTCAATTCCTGTGACATAATATCAGAAACATTTTATCAGTTTACCGCTTTTTGATATCTGTCACAGGGACCGAGATAAATGAGCTCAAACTTGACAGTGTAGGTGCCCTTCTATTACAGGTTTTATGGTAACTGTAAAATTTTCAATTTCAGTCGACGCCCAACCATTTAATAAAACTCTAAAACGCTTCAAAGGACTATTCGACTACATTGACAAAATGCAATACGAAACGACACCTGACTACGAGTATATTCTGACATCTTGAAGACGTGTGCAAGCGACGTCGGTGCGAAACTCAATGGAAAATGGGATTGGATTGGGCAATTGAAGAAGAAGGCGTTCGAAAGTGAAAGTGATTCTGAGAAATCTGATAAGAAGGGTAGTGGAGATGATGATGAATAATCTGGAACTGGGAAGACTAATAATTTTTGAATGTGTGAACTAATTCAAATGAATAAACTTGATTATTAATTTGAAAGTTCTTAAAAAAGAAATCTTAAAAAACTACAAAAAATCCAAAAATTCTGAAACTCCTAACAGCCAAAAAATTCTGGATTCTCAAAAAAATTCAAACATTCTGAAAGTCTAAAAACATACAGGTTCAGAATCTCAGAATCTCAGAATCTCAGAGTTTCAGAACCTCAGAATCTCAGTATTTCAGAATCTCAAAATCTCATAAATTTCAGAATCTCAGAATTTCAGAATCTCAAA</canonical>
            <polymorphic>AATTGTATGTAAACGAGAATGGAGATCACAAAGTGAAGAGAAAGAAAGTCAAGTTTTTGGGAACACTGAGATATGCATGCAGAGCATGTATGACCCAAATGGAACAGGGAAGAAAAGATGATTTGGAGACGTGGCTTTATATGGTGGCTGATTTGTTGGATGAAAGAAGAGGAATGCCGTGGAGGAAACATGCCGAACTAAAGACGATTCTCAAGTTAAAGGATGAGTTTTTCAAAGAATGTGAGTTTGTTTTTTGAGTTTCTGTGGCCCCAATTTTGAGCAAATTTATCTCAATTCCTGTGACATAATATCAGAAACATTTTATCAGTTTACCGCTTTTTGATATCTGTCACAGGGACCGAGATAAATGAGCTCAAACTTGACAGTGTAGGTGCCCTTCTATTACAGGTTTTATGGTAACTGTAAAATTTTCAATTTCAGTCGACGCCCAACCATTTAATAAAACTCTAAAACGCTTCAAAGGACTATTCGACTACATYGACAAAATGCAATACGAAACGACACCTGACTACGAGTATATTCTGACATCTTGAAGACGTGTGCAAGCGACGTCGGTGCGAAACTCAATGGAAAATGGGATTGGATTGGGCAATTGAAGAAGAAGGCGTTCGAAAGTGAAAGTGATTCTGAGAAATCTGATAAGAAGGGTAGTGGAGATGATGATGAATAATCTGGAACTGGGAAGACTAATAATTTTTGAATGTGTGAACTAATTCAAATGAATAAACTTGATTATTAATTTGAAAGTTCTTAAAAAAGAAATCTTAAAAAACTACAAAAAATCCAAAAATTCTGAAACTCCTAACAGCCAAAAAATTCTGGATTCTCAAAAAAATTCAAACATTCTGAAAGTCTAAAAACATACAGGTTCAGAATCTCAGAATCTCAGAATCTCAGAGTTTCAGAACCTCAGAATCTCAGTATTTCAGAATCTCAAAATCTCATAAATTTCAGAATCTCAGAATTTCAGAATCTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCAACCATTTAATAAAACTCTA</pcr_primer_p1>
		<pcr_primer_p2>AGATTATTCATCATCATCTCCAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCCAACCATTTAATAAAACTCTAAAACGCTTCAAAGGACTATTCGACTACATTGACAAAATGCAATACGAAACGACACCTGACTACGAGTATATTCTGACATCTTGAAGACGTGTGCAAGCGACGTCGGTGCGAAACTCAATGGAAAATGGGATTGGATTGGGCAATTGAAGAAGAAGGCGTTCGAAAGTGAAAGTGATTCTGAGAAATCTGATAAGAAGGGTAGTGGAGATGATGATGAATAATCT</canonical_amplicon>
		<polymorphic_amplicon>CCCAACCATTTAATAAAACTCTAAAACGCTTCAAAGGACTATTCGACTACATYGACAAAATGCAATACGAAACGACACCTGACTACGAGTATATTCTGACATCTTGAAGACGTGTGCAAGCGACGTCGGTGCGAAACTCAATGGAAAATGGGATTGGATTGGGCAATTGAAGAAGAAGGCGTTCGAAAGTGAAAGTGATTCTGAGAAATCTGATAAGAAGGGTAGTGGAGATGATGATGAATAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37607</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>535912</contig_pos>
        <strand>+</strand>
        <context>AATAATTTTT[G/T]RATGTGTGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAGTGGAGATGATGATGAATAATCTGGAACTGGGAAGACTAATAATTTTT</left_flank>
        <right_flank>AATGTGTGAACTAATTCAAATGAATAAACTTGATTATTAATTTGAAAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATGAGTTTTTCAAAGAATGTGAGTTTGTTTTTTGAGTTTCTGTGGCCCCAATTTTGAGCAAATTTATCTCAATTCCTGTGACATAATATCAGAAACATTTTATCAGTTTACCGCTTTTTGATATCTGTCACAGGGACCGAGATAAATGAGCTCAAACTTGACAGTGTAGGTGCCCTTCTATTACAGGTTTTATGGTAACTGTAAAATTTTCAATTTCAGTCGACGCCCAACCATTTAATAAAACTCTAAAACGCTTCAAAGGACTATTCGACTACATTGACAAAATGCAATACGAAACGACACCTGACTACGAGTATATTCTGACATCTTGAAGACGTGTGCAAGCGACGTCGGTGCGAAACTCAATGGAAAATGGGATTGGATTGGGCAATTGAAGAAGAAGGCGTTCGAAAGTGAAAGTGATTCTGAGAAATCTGATAAGAAGGGTAGTGGAGATGATGATGAATAATCTGGAACTGGGAAGACTAATAATTTTTGAATGTGTGAACTAATTCAAATGAATAAACTTGATTATTAATTTGAAAGTTCTTAAAAAAGAAATCTTAAAAAACTACAAAAAATCCAAAAATTCTGAAACTCCTAACAGCCAAAAAATTCTGGATTCTCAAAAAAATTCAAACATTCTGAAAGTCTAAAAACATACAGGTTCAGAATCTCAGAATCTCAGAATCTCAGAGTTTCAGAACCTCAGAATCTCAGTATTTCAGAATCTCAAAATCTCATAAATTTCAGAATCTCAGAATTTCAGAATCTCAAAATGTCATAAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATATCAGGATTTCAGAATCTCAAAATCTCATAAATTTCAGAATCTCAGAATCTCAGTATCTAAGAATCTCAGAATATCAGGATTTCAGAATCTCAAAATCTCATAAATTTCAGAATCTCAGAATTTCAGAATCTCAAAATGTCATAAATTTCAGAATCTCAGA</canonical>
            <polymorphic>GGATGAGTTTTTCAAAGAATGTGAGTTTGTTTTTTGAGTTTCTGTGGCCCCAATTTTGAGCAAATTTATCTCAATTCCTGTGACATAATATCAGAAACATTTTATCAGTTTACCGCTTTTTGATATCTGTCACAGGGACCGAGATAAATGAGCTCAAACTTGACAGTGTAGGTGCCCTTCTATTACAGGTTTTATGGTAACTGTAAAATTTTCAATTTCAGTCGACGCCCAACCATTTAATAAAACTCTAAAACGCTTCAAAGGACTATTCGACTACATTGACAAAATGCAATACGAAACGACACCTGACTACGAGTATATTCTGACATCTTGAAGACGTGTGCAAGCGACGTCGGTGCGAAACTCAATGGAAAATGGGATTGGATTGGGCAATTGAAGAAGAAGGCGTTCGAAAGTGAAAGTGATTCTGAGAAATCTGATAAGAAGGGTAGTGGAGATGATGATGAATAATCTGGAACTGGGAAGACTAATAATTTTTKAATGTGTGAACTAATTCAAATGAATAAACTTGATTATTAATTTGAAAGTTCTTAAAAAAGAAATCTTAAAAAACTACAAAAAATCCAAAAATTCTGAAACTCCTAACAGCCAAAAAATTCTGGATTCTCAAAAAAATTCAAACATTCTGAAAGTCTAAAAACATACAGGTTCAGAATCTCAGAATCTCAGAATCTCAGAGTTTCAGAACCTCAGAATCTCAGTATTTCAGAATCTCAAAATCTCATAAATTTCAGAATCTCAGAATTTCAGAATCTCAAAATGTCATAAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATATCAGGATTTCAGAATCTCAAAATCTCATAAATTTCAGAATCTCAGAATCTCAGTATCTAAGAATCTCAGAATATCAGGATTTCAGAATCTCAAAATCTCATAAATTTCAGAATCTCAGAATTTCAGAATCTCAAAATGTCATAAATTTCAGAATCTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCGAAAGTGAAAGTGATTCT</pcr_primer_p1>
		<pcr_primer_p2>GACTTTCAGAATGTTTGAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTCGAAAGTGAAAGTGATTCTGAGAAATCTGATAAGAAGGGTAGTGGAGATGATGATGAATAATCTGGAACTGGGAAGACTAATAATTTTTGAATGTGTGAACTAATTCAAATGAATAAACTTGATTATTAATTTGAAAGTTCTTAAAAAAGAAATCTTAAAAAACTACAAAAAATCCAAAAATTCTGAAACTCCTAACAGCCAAAAAATTCTGGATTCTCAAAAAAATTCAAACATTCTGAAAGTC</canonical_amplicon>
		<polymorphic_amplicon>GTTCGAAAGTGAAAGTGATTCTGAGAAATCTGATAAGAAGGGTAGTGGAGATGATGATGAATAATCTGGAACTGGGAAGACTAATAATTTTTKAATGTGTGAACTAATTCAAATGAATAAACTTGATTATTAATTTGAAAGTTCTTAAAAAAGAAATCTTAAAAAACTACAAAAAATCCAAAAATTCTGAAACTCCTAACAGCCAAAAAATTCTGGATTCTCAAAAAAATTCAAACATTCTGAAAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37608</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>535913</contig_pos>
        <strand>+</strand>
        <context>ATAATTTTTK[A/G]ATGTGTGAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTGGAGATGATGATGAATAATCTGGAACTGGGAAGACTAATAATTTTTG</left_flank>
        <right_flank>ATGTGTGAACTAATTCAAATGAATAAACTTGATTATTAATTTGAAAGTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGAGTTTTTCAAAGAATGTGAGTTTGTTTTTTGAGTTTCTGTGGCCCCAATTTTGAGCAAATTTATCTCAATTCCTGTGACATAATATCAGAAACATTTTATCAGTTTACCGCTTTTTGATATCTGTCACAGGGACCGAGATAAATGAGCTCAAACTTGACAGTGTAGGTGCCCTTCTATTACAGGTTTTATGGTAACTGTAAAATTTTCAATTTCAGTCGACGCCCAACCATTTAATAAAACTCTAAAACGCTTCAAAGGACTATTCGACTACATTGACAAAATGCAATACGAAACGACACCTGACTACGAGTATATTCTGACATCTTGAAGACGTGTGCAAGCGACGTCGGTGCGAAACTCAATGGAAAATGGGATTGGATTGGGCAATTGAAGAAGAAGGCGTTCGAAAGTGAAAGTGATTCTGAGAAATCTGATAAGAAGGGTAGTGGAGATGATGATGAATAATCTGGAACTGGGAAGACTAATAATTTTTGAATGTGTGAACTAATTCAAATGAATAAACTTGATTATTAATTTGAAAGTTCTTAAAAAAGAAATCTTAAAAAACTACAAAAAATCCAAAAATTCTGAAACTCCTAACAGCCAAAAAATTCTGGATTCTCAAAAAAATTCAAACATTCTGAAAGTCTAAAAACATACAGGTTCAGAATCTCAGAATCTCAGAATCTCAGAGTTTCAGAACCTCAGAATCTCAGTATTTCAGAATCTCAAAATCTCATAAATTTCAGAATCTCAGAATTTCAGAATCTCAAAATGTCATAAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATATCAGGATTTCAGAATCTCAAAATCTCATAAATTTCAGAATCTCAGAATCTCAGTATCTAAGAATCTCAGAATATCAGGATTTCAGAATCTCAAAATCTCATAAATTTCAGAATCTCAGAATTTCAGAATCTCAAAATGTCATAAATTTCAGAATCTCAGAA</canonical>
            <polymorphic>GATGAGTTTTTCAAAGAATGTGAGTTTGTTTTTTGAGTTTCTGTGGCCCCAATTTTGAGCAAATTTATCTCAATTCCTGTGACATAATATCAGAAACATTTTATCAGTTTACCGCTTTTTGATATCTGTCACAGGGACCGAGATAAATGAGCTCAAACTTGACAGTGTAGGTGCCCTTCTATTACAGGTTTTATGGTAACTGTAAAATTTTCAATTTCAGTCGACGCCCAACCATTTAATAAAACTCTAAAACGCTTCAAAGGACTATTCGACTACATTGACAAAATGCAATACGAAACGACACCTGACTACGAGTATATTCTGACATCTTGAAGACGTGTGCAAGCGACGTCGGTGCGAAACTCAATGGAAAATGGGATTGGATTGGGCAATTGAAGAAGAAGGCGTTCGAAAGTGAAAGTGATTCTGAGAAATCTGATAAGAAGGGTAGTGGAGATGATGATGAATAATCTGGAACTGGGAAGACTAATAATTTTTGRATGTGTGAACTAATTCAAATGAATAAACTTGATTATTAATTTGAAAGTTCTTAAAAAAGAAATCTTAAAAAACTACAAAAAATCCAAAAATTCTGAAACTCCTAACAGCCAAAAAATTCTGGATTCTCAAAAAAATTCAAACATTCTGAAAGTCTAAAAACATACAGGTTCAGAATCTCAGAATCTCAGAATCTCAGAGTTTCAGAACCTCAGAATCTCAGTATTTCAGAATCTCAAAATCTCATAAATTTCAGAATCTCAGAATTTCAGAATCTCAAAATGTCATAAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATATCAGGATTTCAGAATCTCAAAATCTCATAAATTTCAGAATCTCAGAATCTCAGTATCTAAGAATCTCAGAATATCAGGATTTCAGAATCTCAAAATCTCATAAATTTCAGAATCTCAGAATTTCAGAATCTCAAAATGTCATAAATTTCAGAATCTCAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCGAAAGTGAAAGTGATTCT</pcr_primer_p1>
		<pcr_primer_p2>GACTTTCAGAATGTTTGAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTCGAAAGTGAAAGTGATTCTGAGAAATCTGATAAGAAGGGTAGTGGAGATGATGATGAATAATCTGGAACTGGGAAGACTAATAATTTTTGAATGTGTGAACTAATTCAAATGAATAAACTTGATTATTAATTTGAAAGTTCTTAAAAAAGAAATCTTAAAAAACTACAAAAAATCCAAAAATTCTGAAACTCCTAACAGCCAAAAAATTCTGGATTCTCAAAAAAATTCAAACATTCTGAAAGTC</canonical_amplicon>
		<polymorphic_amplicon>GTTCGAAAGTGAAAGTGATTCTGAGAAATCTGATAAGAAGGGTAGTGGAGATGATGATGAATAATCTGGAACTGGGAAGACTAATAATTTTTGRATGTGTGAACTAATTCAAATGAATAAACTTGATTATTAATTTGAAAGTTCTTAAAAAAGAAATCTTAAAAAACTACAAAAAATCCAAAAATTCTGAAACTCCTAACAGCCAAAAAATTCTGGATTCTCAAAAAAATTCAAACATTCTGAAAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37609</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>535929</contig_pos>
        <strand>+</strand>
        <context>TGAACTAATT[C/T]AAATGAATAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATAATCTGGAACTGGGAAGACTAATAATTTTTGAATGTGTGAACTAATT</left_flank>
        <right_flank>AAATGAATAAACTTGATTATTAATTTGAAAGTTCTTAAAAAAGAAATCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGTGAGTTTGTTTTTTGAGTTTCTGTGGCCCCAATTTTGAGCAAATTTATCTCAATTCCTGTGACATAATATCAGAAACATTTTATCAGTTTACCGCTTTTTGATATCTGTCACAGGGACCGAGATAAATGAGCTCAAACTTGACAGTGTAGGTGCCCTTCTATTACAGGTTTTATGGTAACTGTAAAATTTTCAATTTCAGTCGACGCCCAACCATTTAATAAAACTCTAAAACGCTTCAAAGGACTATTCGACTACATTGACAAAATGCAATACGAAACGACACCTGACTACGAGTATATTCTGACATCTTGAAGACGTGTGCAAGCGACGTCGGTGCGAAACTCAATGGAAAATGGGATTGGATTGGGCAATTGAAGAAGAAGGCGTTCGAAAGTGAAAGTGATTCTGAGAAATCTGATAAGAAGGGTAGTGGAGATGATGATGAATAATCTGGAACTGGGAAGACTAATAATTTTTGAATGTGTGAACTAATTCAAATGAATAAACTTGATTATTAATTTGAAAGTTCTTAAAAAAGAAATCTTAAAAAACTACAAAAAATCCAAAAATTCTGAAACTCCTAACAGCCAAAAAATTCTGGATTCTCAAAAAAATTCAAACATTCTGAAAGTCTAAAAACATACAGGTTCAGAATCTCAGAATCTCAGAATCTCAGAGTTTCAGAACCTCAGAATCTCAGTATTTCAGAATCTCAAAATCTCATAAATTTCAGAATCTCAGAATTTCAGAATCTCAAAATGTCATAAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATATCAGGATTTCAGAATCTCAAAATCTCATAAATTTCAGAATCTCAGAATCTCAGTATCTAAGAATCTCAGAATATCAGGATTTCAGAATCTCAAAATCTCATAAATTTCAGAATCTCAGAATTTCAGAATCTCAAAATGTCATAAATTTCAGAATCTCAGAATCTCAGAATCTCAGAA</canonical>
            <polymorphic>AATGTGAGTTTGTTTTTTGAGTTTCTGTGGCCCCAATTTTGAGCAAATTTATCTCAATTCCTGTGACATAATATCAGAAACATTTTATCAGTTTACCGCTTTTTGATATCTGTCACAGGGACCGAGATAAATGAGCTCAAACTTGACAGTGTAGGTGCCCTTCTATTACAGGTTTTATGGTAACTGTAAAATTTTCAATTTCAGTCGACGCCCAACCATTTAATAAAACTCTAAAACGCTTCAAAGGACTATTCGACTACATTGACAAAATGCAATACGAAACGACACCTGACTACGAGTATATTCTGACATCTTGAAGACGTGTGCAAGCGACGTCGGTGCGAAACTCAATGGAAAATGGGATTGGATTGGGCAATTGAAGAAGAAGGCGTTCGAAAGTGAAAGTGATTCTGAGAAATCTGATAAGAAGGGTAGTGGAGATGATGATGAATAATCTGGAACTGGGAAGACTAATAATTTTTGAATGTGTGAACTAATTYAAATGAATAAACTTGATTATTAATTTGAAAGTTCTTAAAAAAGAAATCTTAAAAAACTACAAAAAATCCAAAAATTCTGAAACTCCTAACAGCCAAAAAATTCTGGATTCTCAAAAAAATTCAAACATTCTGAAAGTCTAAAAACATACAGGTTCAGAATCTCAGAATCTCAGAATCTCAGAGTTTCAGAACCTCAGAATCTCAGTATTTCAGAATCTCAAAATCTCATAAATTTCAGAATCTCAGAATTTCAGAATCTCAAAATGTCATAAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATATCAGGATTTCAGAATCTCAAAATCTCATAAATTTCAGAATCTCAGAATCTCAGTATCTAAGAATCTCAGAATATCAGGATTTCAGAATCTCAAAATCTCATAAATTTCAGAATCTCAGAATTTCAGAATCTCAAAATGTCATAAATTTCAGAATCTCAGAATCTCAGAATCTCAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>505 389 106</canonical_bands>
                <polymorphic_bands>611 389</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCGAAAGTGAAAGTGATTCT</pcr_primer_p1>
		<pcr_primer_p2>GACTTTCAGAATGTTTGAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTCGAAAGTGAAAGTGATTCTGAGAAATCTGATAAGAAGGGTAGTGGAGATGATGATGAATAATCTGGAACTGGGAAGACTAATAATTTTTGAATGTGTGAACTAATTCAAATGAATAAACTTGATTATTAATTTGAAAGTTCTTAAAAAAGAAATCTTAAAAAACTACAAAAAATCCAAAAATTCTGAAACTCCTAACAGCCAAAAAATTCTGGATTCTCAAAAAAATTCAAACATTCTGAAAGTC</canonical_amplicon>
		<polymorphic_amplicon>GTTCGAAAGTGAAAGTGATTCTGAGAAATCTGATAAGAAGGGTAGTGGAGATGATGATGAATAATCTGGAACTGGGAAGACTAATAATTTTTGAATGTGTGAACTAATTYAAATGAATAAACTTGATTATTAATTTGAAAGTTCTTAAAAAAGAAATCTTAAAAAACTACAAAAAATCCAAAAATTCTGAAACTCCTAACAGCCAAAAAATTCTGGATTCTCAAAAAAATTCAAACATTCTGAAAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37610</snp_id>
        <super_contig>c012401136.Contig1</super_contig>
        <contig_pos>535966</contig_pos>
        <strand>+</strand>
        <context>GAAAGTTCTT[C/T]AAAAAGAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGTGAACTAATTCAAATGAATAAACTTGATTATTAATTTGAAAGTTCTT</left_flank>
        <right_flank>AAAAAGAAATCTTAAAAAACTACAAAAAATCCAAAAATTCTGAAACTCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAGCAAATTTATCTCAATTCCTGTGACATAATATCAGAAACATTTTATCAGTTTACCGCTTTTTGATATCTGTCACAGGGACCGAGATAAATGAGCTCAAACTTGACAGTGTAGGTGCCCTTCTATTACAGGTTTTATGGTAACTGTAAAATTTTCAATTTCAGTCGACGCCCAACCATTTAATAAAACTCTAAAACGCTTCAAAGGACTATTCGACTACATTGACAAAATGCAATACGAAACGACACCTGACTACGAGTATATTCTGACATCTTGAAGACGTGTGCAAGCGACGTCGGTGCGAAACTCAATGGAAAATGGGATTGGATTGGGCAATTGAAGAAGAAGGCGTTCGAAAGTGAAAGTGATTCTGAGAAATCTGATAAGAAGGGTAGTGGAGATGATGATGAATAATCTGGAACTGGGAAGACTAATAATTTTTGAATGTGTGAACTAATTCAAATGAATAAACTTGATTATTAATTTGAAAGTTCTTAAAAAAGAAATCTTAAAAAACTACAAAAAATCCAAAAATTCTGAAACTCCTAACAGCCAAAAAATTCTGGATTCTCAAAAAAATTCAAACATTCTGAAAGTCTAAAAACATACAGGTTCAGAATCTCAGAATCTCAGAATCTCAGAGTTTCAGAACCTCAGAATCTCAGTATTTCAGAATCTCAAAATCTCATAAATTTCAGAATCTCAGAATTTCAGAATCTCAAAATGTCATAAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATATCAGGATTTCAGAATCTCAAAATCTCATAAATTTCAGAATCTCAGAATCTCAGTATCTAAGAATCTCAGAATATCAGGATTTCAGAATCTCAAAATCTCATAAATTTCAGAATCTCAGAATTTCAGAATCTCAAAATGTCATAAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATATCAGGATTTCAGAATCTCA</canonical>
            <polymorphic>TTTGAGCAAATTTATCTCAATTCCTGTGACATAATATCAGAAACATTTTATCAGTTTACCGCTTTTTGATATCTGTCACAGGGACCGAGATAAATGAGCTCAAACTTGACAGTGTAGGTGCCCTTCTATTACAGGTTTTATGGTAACTGTAAAATTTTCAATTTCAGTCGACGCCCAACCATTTAATAAAACTCTAAAACGCTTCAAAGGACTATTCGACTACATTGACAAAATGCAATACGAAACGACACCTGACTACGAGTATATTCTGACATCTTGAAGACGTGTGCAAGCGACGTCGGTGCGAAACTCAATGGAAAATGGGATTGGATTGGGCAATTGAAGAAGAAGGCGTTCGAAAGTGAAAGTGATTCTGAGAAATCTGATAAGAAGGGTAGTGGAGATGATGATGAATAATCTGGAACTGGGAAGACTAATAATTTTTGAATGTGTGAACTAATTCAAATGAATAAACTTGATTATTAATTTGAAAGTTCTTYAAAAAGAAATCTTAAAAAACTACAAAAAATCCAAAAATTCTGAAACTCCTAACAGCCAAAAAATTCTGGATTCTCAAAAAAATTCAAACATTCTGAAAGTCTAAAAACATACAGGTTCAGAATCTCAGAATCTCAGAATCTCAGAGTTTCAGAACCTCAGAATCTCAGTATTTCAGAATCTCAAAATCTCATAAATTTCAGAATCTCAGAATTTCAGAATCTCAAAATGTCATAAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATATCAGGATTTCAGAATCTCAAAATCTCATAAATTTCAGAATCTCAGAATCTCAGTATCTAAGAATCTCAGAATATCAGGATTTCAGAATCTCAAAATCTCATAAATTTCAGAATCTCAGAATTTCAGAATCTCAAAATGTCATAAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATATCAGGATTTCAGAATCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>488 300 183 15 14</canonical_bands>
                <polymorphic_bands>488 300 183 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCGAAAGTGAAAGTGATTCT</pcr_primer_p1>
		<pcr_primer_p2>GACTTTCAGAATGTTTGAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTCGAAAGTGAAAGTGATTCTGAGAAATCTGATAAGAAGGGTAGTGGAGATGATGATGAATAATCTGGAACTGGGAAGACTAATAATTTTTGAATGTGTGAACTAATTCAAATGAATAAACTTGATTATTAATTTGAAAGTTCTTAAAAAAGAAATCTTAAAAAACTACAAAAAATCCAAAAATTCTGAAACTCCTAACAGCCAAAAAATTCTGGATTCTCAAAAAAATTCAAACATTCTGAAAGTC</canonical_amplicon>
		<polymorphic_amplicon>GTTCGAAAGTGAAAGTGATTCTGAGAAATCTGATAAGAAGGGTAGTGGAGATGATGATGAATAATCTGGAACTGGGAAGACTAATAATTTTTGAATGTGTGAACTAATTCAAATGAATAAACTTGATTATTAATTTGAAAGTTCTTYAAAAAGAAATCTTAAAAAACTACAAAAAATCCAAAAATTCTGAAACTCCTAACAGCCAAAAAATTCTGGATTCTCAAAAAAATTCAAACATTCTGAAAGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37611</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>23147</contig_pos>
        <strand>+</strand>
        <context>TCTTTTGGTT[C/T]TTCTTTTGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCATCTTCAAAAGGACTTGGAGAAGATTCCTTTCTATCTTCTTTTGGTT</left_flank>
        <right_flank>TTCTTTTGATTTCCGCGGTTTTTCCGTAGATAGCTTCTTCTCTGGTGATG</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACAAACTGCTGCATACTCCATTCGATTGAAGTCGTCCAACATTTGAACATGAGTGTCTATAACGGATTCAACCATATTGTGAACATTGGTTTGGCATGTGTGGGGTTCTGAAACAATTTGTGGTTGCAGAAAAACATTTTGAGTCATAGTAAGTACCTTCAGAGTTTCTTCTTCGACTTCTGAATCGTCTATCTCTTCTTTTTGAAATTTCAATTTCTCTTTCAGTTTCACCAACATTCGAGGAAGACGAAGATGAGGAACTTCGAGACTTCAATCTTTCAATTATCCCCTTCTCCAAATAATTCCTTCTTTCAATAATTCTTTCCTTGGACTTCTTTCTCTTCTCATCTTCTTTTTTGTTATCTACATTTAATGTCTCTTCAAACGTTCGATTGGTTTCTCTGACTGTCGATTTAGAAGATTCAGACGACGAGTTGAGTTTTGGTATGGCATCTTCAAAAGGACTTGGAGAAGATTCCTTTCTATCTTCTTTTGGTTTTTCTTTTGATTTCCGCGGTTTTTCCGTAGATAGCTTCTTCTCTGGTGATGCTTTTGGTGTTGAAGCTTCAGACGACGTTGAGGAGGAAGAAGAAGAAGAAGACTTCACTGATTCAAAGTCTGATCCATACTTGGAACTTAATTTAGAAGTGGAAGATTCTGATGATGATGAAGAGCTAGAATCGGTGCTAGATTCCGTTTCAGAAGAAGAGGATGGCGAAGTTGAAGATTCGGATGATGCTGGTGTCTTCACTCTCCTTTTTAATTCCTCTTTTTTCGTCTTCTGAACTTTAGATTCTGGAGCTGGTTGTGCTCTCACTGGAGGCTTCCTTGGAGGAGACGGAAGAACCTCTTCGAAGACTTCATCAAAAACAATTGAATCTCCATCTGAACTGTCACTTCCACTTTGAATTGCCTTTTTGAACGGACTCTTGGCGAGCATTTTAGTTTTTGGGATCTCCTCGGATAATTCTTCTTCTTGAATGCTTTCGAAGTGCTGAA</canonical>
            <polymorphic>CACAAACTGCTGCATACTCCATTCGATTGAAGTCGTCCAACATTTGAACATGAGTGTCTATAACGGATTCAACCATATTGTGAACATTGGTTTGGCATGTGTGGGGTTCTGAAACAATTTGTGGTTGCAGAAAAACATTTTGAGTCATAGTAAGTACCTTCAGAGTTTCTTCTTCGACTTCTGAATCGTCTATCTCTTCTTTTTGAAATTTCAATTTCTCTTTCAGTTTCACCAACATTCGAGGAAGACGAAGATGAGGAACTTCGAGACTTCAATCTTTCAATTATCCCCTTCTCCAAATAATTCCTTCTTTCAATAATTCTTTCCTTGGACTTCTTTCTCTTCTCATCTTCTTTTTTGTTATCTACATTTAATGTCTCTTCAAACGTTCGATTGGTTTCTCTGACTGTCGATTTAGAAGATTCAGACGACGAGTTGAGTTTTGGTATGGCATCTTCAAAAGGACTTGGAGAAGATTCCTTTCTATCTTCTTTTGGTTYTTCTTTTGATTTCCGCGGTTTTTCCGTAGATAGCTTCTTCTCTGGTGATGCTTTTGGTGTTGAAGCTTCAGACGACGTTGAGGAGGAAGAAGAAGAAGAAGACTTCACTGATTCAAAGTCTGATCCATACTTGGAACTTAATTTAGAAGTGGAAGATTCTGATGATGATGAAGAGCTAGAATCGGTGCTAGATTCCGTTTCAGAAGAAGAGGATGGCGAAGTTGAAGATTCGGATGATGCTGGTGTCTTCACTCTCCTTTTTAATTCCTCTTTTTTCGTCTTCTGAACTTTAGATTCTGGAGCTGGTTGTGCTCTCACTGGAGGCTTCCTTGGAGGAGACGGAAGAACCTCTTCGAAGACTTCATCAAAAACAATTGAATCTCCATCTGAACTGTCACTTCCACTTTGAATTGCCTTTTTGAACGGACTCTTGGCGAGCATTTTAGTTTTTGGGATCTCCTCGGATAATTCTTCTTCTTGAATGCTTTCGAAGTGCTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTCTCTGACTGTCGATTTAGA</pcr_primer_p1>
		<pcr_primer_p2>AATTAAGTTCCAAGTATGGATCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTTTCTCTGACTGTCGATTTAGAAGATTCAGACGACGAGTTGAGTTTTGGTATGGCATCTTCAAAAGGACTTGGAGAAGATTCCTTTCTATCTTCTTTTGGTTTTTCTTTTGATTTCCGCGGTTTTTCCGTAGATAGCTTCTTCTCTGGTGATGCTTTTGGTGTTGAAGCTTCAGACGACGTTGAGGAGGAAGAAGAAGAAGAAGACTTCACTGATTCAAAGTCTGATCCATACTTGGAACTTAATT</canonical_amplicon>
		<polymorphic_amplicon>GTTTCTCTGACTGTCGATTTAGAAGATTCAGACGACGAGTTGAGTTTTGGTATGGCATCTTCAAAAGGACTTGGAGAAGATTCCTTTCTATCTTCTTTTGGTTYTTCTTTTGATTTCCGCGGTTTTTCCGTAGATAGCTTCTTCTCTGGTGATGCTTTTGGTGTTGAAGCTTCAGACGACGTTGAGGAGGAAGAAGAAGAAGAAGACTTCACTGATTCAAAGTCTGATCCATACTTGGAACTTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37612</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>40096</contig_pos>
        <strand>+</strand>
        <context>TCTGAGCTTT[C/T]TTCYTAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCCGAAGGGCACTTCAATTAAAGGGGACCTTTCTACGTTTCTGAGCTTT</left_flank>
        <right_flank>TTCCTAAAATTTTATCAAAAAATTCAATGTATTCTTGCTCAAAATTGATG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTAATCATTGAAAATTCAAAATAGAAATGGTTTATGGGTTATAGTGAATGGGTTTTTGTTAATACTCATTGGACTTTTAGATCATATGTGAGTTTTATTTAATCTAGTAATCTCAGGATTAACTTCTATGATCGGTCACTGCGGAATGAAAATGATTGAAAATCTGAAATAACATTACCGATTTCTCAAAACAAAAATTTCGAATTTGAAAACTCGGAAAATCTCCATGTAATTTTCGAGAGATCCTTCTTAAATTGTAGATGCTCAAATTAAAACCATATATTTCAAAACAACCACATTTAAAAGAAAAAGTATGATTAGAGAATTCAGGAATGAGGATTTCAGAGTTTCAATTTTTTGAGGGGTGCTCCTCCATGTGGTGTAAAGCACAAAATTTACCGTAAAACCAGTATTAGAAGGACAGGTCCTTCTACTTGTTTCCAGGTACCTCCGAAGGGCACTTCAATTAAAGGGGACCTTTCTACGTTTCTGAGCTTTTTTCCTAAAATTTTATCAAAAAATTCAATGTATTCTTGCTCAAAATTGATGAAAACCTAACAATTGCACCAAAATTGAGCAAGTTTTTAAGCAAAAAAGAGTGTTTAGACAAGAAAAAACGGAAATTGAAGAGCCTTATTATTGAAAAGCCTTTCTATTAAAGGTGGCCTGAGAAAATTTTCCGGAATTCAGATTTACCAGCTTTGGTCCTTTTTAGATCTCATCTCCACGTCATAAATTTCTGATGACGTCAAAAGAATCGGTCAATACTCGACTACTAAATCCTATTCAAATTTTCTTTCTTCCGTAAAACAGAAACTATTCGTAGTATCAAACTGTTCTCTGTATTCTATCTTCTCTTATTCTCTCCCTTTTAAACTCACAATTGGGAACATCATTGCCATTTTTCGACTCGATTCTAGTTGGAGAATGATTCAGCTTGAATATAGCTGAATCAGTATTTTTCTGAATTTCAGACAAAAACACTGCAACTTTATATAC</canonical>
            <polymorphic>TGTAATCATTGAAAATTCAAAATAGAAATGGTTTATGGGTTATAGTGAATGGGTTTTTGTTAATACTCATTGGACTTTTAGATCATATGTGAGTTTTATTTAATCTAGTAATCTCAGGATTAACTTCTATGATCGGTCACTGCGGAATGAAAATGATTGAAAATCTGAAATAACATTACCGATTTCTCAAAACAAAAATTTCGAATTTGAAAACTCGGAAAATCTCCATGTAATTTTCGAGAGATCCTTCTTAAATTGTAGATGCTCAAATTAAAACCATATATTTCAAAACAACCACATTTAAAAGAAAAAGTATGATTAGAGAATTCAGGAATGAGGATTTCAGAGTTTCAATTTTTTGAGGGGTGCTCCTCCATGTGGTGTAAAGCACAAAATTTACCGTAAAACCAGTATTAGAAGGACAGGTCCTTCTACTTGTTTCCAGGTACCTCCGAAGGGCACTTCAATTAAAGGGGACCTTTCTACGTTTCTGAGCTTTYTTCCTAAAATTTTATCAAAAAATTCAATGTATTCTTGCTCAAAATTGATGAAAACCTAACAATTGCACCAAAATTGAGCAAGTTTTTAAGCAAAAAAGAGTGTTTAGACAAGAAAAAACGGAAATTGAAGAGCCTTATTATTGAAAAGCCTTTCTATTAAAGGTGGCCTGAGAAAATTTTCCGGAATTCAGATTTACCAGCTTTGGTCCTTTTTAGATCTCATCTCCACGTCATAAATTTCTGATGACGTCAAAAGAATCGGTCAATACTCGACTACTAAATCCTATTCAAATTTTCTTTCTTCCGTAAAACAGAAACTATTCGTAGTATCAAACTGTTCTCTGTATTCTATCTTCTCTTATTCTCTCCCTTTTAAACTCACAATTGGGAACATCATTGCCATTTTTCGACTCGATTCTAGTTGGAGAATGATTCAGCTTGAATATAGCTGAATCAGTATTTTTCTGAATTTCAGACAAAAACACTGCAACTTTATATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATTAGAGAATTCAGGAATGAG</pcr_primer_p1>
		<pcr_primer_p2>AATTGTTAGGTTTTCATCAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGATTAGAGAATTCAGGAATGAGGATTTCAGAGTTTCAATTTTTTGAGGGGTGCTCCTCCATGTGGTGTAAAGCACAAAATTTACCGTAAAACCAGTATTAGAAGGACAGGTCCTTCTACTTGTTTCCAGGTACCTCCGAAGGGCACTTCAATTAAAGGGGACCTTTCTACGTTTCTGAGCTTTTTTCCTAAAATTTTATCAAAAAATTCAATGTATTCTTGCTCAAAATTGATGAAAACCTAACAATT</canonical_amplicon>
		<polymorphic_amplicon>TGATTAGAGAATTCAGGAATGAGGATTTCAGAGTTTCAATTTTTTGAGGGGTGCTCCTCCATGTGGTGTAAAGCACAAAATTTACCGTAAAACCAGTATTAGAAGGACAGGTCCTTCTACTTGTTTCCAGGTACCTCCGAAGGGCACTTCAATTAAAGGGGACCTTTCTACGTTTCTGAGCTTTYTTCCTAAAATTTTATCAAAAAATTCAATGTATTCTTGCTCAAAATTGATGAAAACCTAACAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37613</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>40100</contig_pos>
        <strand>+</strand>
        <context>AGCTTTYTTC[C/T]TAAAATTTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAGGGCACTTCAATTAAAGGGGACCTTTCTACGTTTCTGAGCTTTTTTC</left_flank>
        <right_flank>TAAAATTTTATCAAAAAATTCAATGTATTCTTGCTCAAAATTGATGAAAA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCATTGAAAATTCAAAATAGAAATGGTTTATGGGTTATAGTGAATGGGTTTTTGTTAATACTCATTGGACTTTTAGATCATATGTGAGTTTTATTTAATCTAGTAATCTCAGGATTAACTTCTATGATCGGTCACTGCGGAATGAAAATGATTGAAAATCTGAAATAACATTACCGATTTCTCAAAACAAAAATTTCGAATTTGAAAACTCGGAAAATCTCCATGTAATTTTCGAGAGATCCTTCTTAAATTGTAGATGCTCAAATTAAAACCATATATTTCAAAACAACCACATTTAAAAGAAAAAGTATGATTAGAGAATTCAGGAATGAGGATTTCAGAGTTTCAATTTTTTGAGGGGTGCTCCTCCATGTGGTGTAAAGCACAAAATTTACCGTAAAACCAGTATTAGAAGGACAGGTCCTTCTACTTGTTTCCAGGTACCTCCGAAGGGCACTTCAATTAAAGGGGACCTTTCTACGTTTCTGAGCTTTTTTCCTAAAATTTTATCAAAAAATTCAATGTATTCTTGCTCAAAATTGATGAAAACCTAACAATTGCACCAAAATTGAGCAAGTTTTTAAGCAAAAAAGAGTGTTTAGACAAGAAAAAACGGAAATTGAAGAGCCTTATTATTGAAAAGCCTTTCTATTAAAGGTGGCCTGAGAAAATTTTCCGGAATTCAGATTTACCAGCTTTGGTCCTTTTTAGATCTCATCTCCACGTCATAAATTTCTGATGACGTCAAAAGAATCGGTCAATACTCGACTACTAAATCCTATTCAAATTTTCTTTCTTCCGTAAAACAGAAACTATTCGTAGTATCAAACTGTTCTCTGTATTCTATCTTCTCTTATTCTCTCCCTTTTAAACTCACAATTGGGAACATCATTGCCATTTTTCGACTCGATTCTAGTTGGAGAATGATTCAGCTTGAATATAGCTGAATCAGTATTTTTCTGAATTTCAGACAAAAACACTGCAACTTTATATACCCGC</canonical>
            <polymorphic>ATCATTGAAAATTCAAAATAGAAATGGTTTATGGGTTATAGTGAATGGGTTTTTGTTAATACTCATTGGACTTTTAGATCATATGTGAGTTTTATTTAATCTAGTAATCTCAGGATTAACTTCTATGATCGGTCACTGCGGAATGAAAATGATTGAAAATCTGAAATAACATTACCGATTTCTCAAAACAAAAATTTCGAATTTGAAAACTCGGAAAATCTCCATGTAATTTTCGAGAGATCCTTCTTAAATTGTAGATGCTCAAATTAAAACCATATATTTCAAAACAACCACATTTAAAAGAAAAAGTATGATTAGAGAATTCAGGAATGAGGATTTCAGAGTTTCAATTTTTTGAGGGGTGCTCCTCCATGTGGTGTAAAGCACAAAATTTACCGTAAAACCAGTATTAGAAGGACAGGTCCTTCTACTTGTTTCCAGGTACCTCCGAAGGGCACTTCAATTAAAGGGGACCTTTCTACGTTTCTGAGCTTTTTTCYTAAAATTTTATCAAAAAATTCAATGTATTCTTGCTCAAAATTGATGAAAACCTAACAATTGCACCAAAATTGAGCAAGTTTTTAAGCAAAAAAGAGTGTTTAGACAAGAAAAAACGGAAATTGAAGAGCCTTATTATTGAAAAGCCTTTCTATTAAAGGTGGCCTGAGAAAATTTTCCGGAATTCAGATTTACCAGCTTTGGTCCTTTTTAGATCTCATCTCCACGTCATAAATTTCTGATGACGTCAAAAGAATCGGTCAATACTCGACTACTAAATCCTATTCAAATTTTCTTTCTTCCGTAAAACAGAAACTATTCGTAGTATCAAACTGTTCTCTGTATTCTATCTTCTCTTATTCTCTCCCTTTTAAACTCACAATTGGGAACATCATTGCCATTTTTCGACTCGATTCTAGTTGGAGAATGATTCAGCTTGAATATAGCTGAATCAGTATTTTTCTGAATTTCAGACAAAAACACTGCAACTTTATATACCCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATTAGAGAATTCAGGAATGAG</pcr_primer_p1>
		<pcr_primer_p2>AATTGTTAGGTTTTCATCAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGATTAGAGAATTCAGGAATGAGGATTTCAGAGTTTCAATTTTTTGAGGGGTGCTCCTCCATGTGGTGTAAAGCACAAAATTTACCGTAAAACCAGTATTAGAAGGACAGGTCCTTCTACTTGTTTCCAGGTACCTCCGAAGGGCACTTCAATTAAAGGGGACCTTTCTACGTTTCTGAGCTTTTTTCCTAAAATTTTATCAAAAAATTCAATGTATTCTTGCTCAAAATTGATGAAAACCTAACAATT</canonical_amplicon>
		<polymorphic_amplicon>TGATTAGAGAATTCAGGAATGAGGATTTCAGAGTTTCAATTTTTTGAGGGGTGCTCCTCCATGTGGTGTAAAGCACAAAATTTACCGTAAAACCAGTATTAGAAGGACAGGTCCTTCTACTTGTTTCCAGGTACCTCCGAAGGGCACTTCAATTAAAGGGGACCTTTCTACGTTTCTGAGCTTTTTTCYTAAAATTTTATCAAAAAATTCAATGTATTCTTGCTCAAAATTGATGAAAACCTAACAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37614</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>40129</contig_pos>
        <strand>+</strand>
        <context>TTCAATGTAT[C/T]CTTGCTCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTACGTTTCTGAGCTTTTTTCCTAAAATTTTATCAAAAAATTCAATGTAT</left_flank>
        <right_flank>CTTGCTCAAAATTGATGAAAACCTAACAATTGCACCAAAATTGAGCAAGT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGGGTTATAGTGAATGGGTTTTTGTTAATACTCATTGGACTTTTAGATCATATGTGAGTTTTATTTAATCTAGTAATCTCAGGATTAACTTCTATGATCGGTCACTGCGGAATGAAAATGATTGAAAATCTGAAATAACATTACCGATTTCTCAAAACAAAAATTTCGAATTTGAAAACTCGGAAAATCTCCATGTAATTTTCGAGAGATCCTTCTTAAATTGTAGATGCTCAAATTAAAACCATATATTTCAAAACAACCACATTTAAAAGAAAAAGTATGATTAGAGAATTCAGGAATGAGGATTTCAGAGTTTCAATTTTTTGAGGGGTGCTCCTCCATGTGGTGTAAAGCACAAAATTTACCGTAAAACCAGTATTAGAAGGACAGGTCCTTCTACTTGTTTCCAGGTACCTCCGAAGGGCACTTCAATTAAAGGGGACCTTTCTACGTTTCTGAGCTTTTTTCCTAAAATTTTATCAAAAAATTCAATGTATTCTTGCTCAAAATTGATGAAAACCTAACAATTGCACCAAAATTGAGCAAGTTTTTAAGCAAAAAAGAGTGTTTAGACAAGAAAAAACGGAAATTGAAGAGCCTTATTATTGAAAAGCCTTTCTATTAAAGGTGGCCTGAGAAAATTTTCCGGAATTCAGATTTACCAGCTTTGGTCCTTTTTAGATCTCATCTCCACGTCATAAATTTCTGATGACGTCAAAAGAATCGGTCAATACTCGACTACTAAATCCTATTCAAATTTTCTTTCTTCCGTAAAACAGAAACTATTCGTAGTATCAAACTGTTCTCTGTATTCTATCTTCTCTTATTCTCTCCCTTTTAAACTCACAATTGGGAACATCATTGCCATTTTTCGACTCGATTCTAGTTGGAGAATGATTCAGCTTGAATATAGCTGAATCAGTATTTTTCTGAATTTCAGACAAAAACACTGCAACTTTATATACCCGCGGTGCTCTGTTCTCGTGCAGACAATATAT</canonical>
            <polymorphic>TATGGGTTATAGTGAATGGGTTTTTGTTAATACTCATTGGACTTTTAGATCATATGTGAGTTTTATTTAATCTAGTAATCTCAGGATTAACTTCTATGATCGGTCACTGCGGAATGAAAATGATTGAAAATCTGAAATAACATTACCGATTTCTCAAAACAAAAATTTCGAATTTGAAAACTCGGAAAATCTCCATGTAATTTTCGAGAGATCCTTCTTAAATTGTAGATGCTCAAATTAAAACCATATATTTCAAAACAACCACATTTAAAAGAAAAAGTATGATTAGAGAATTCAGGAATGAGGATTTCAGAGTTTCAATTTTTTGAGGGGTGCTCCTCCATGTGGTGTAAAGCACAAAATTTACCGTAAAACCAGTATTAGAAGGACAGGTCCTTCTACTTGTTTCCAGGTACCTCCGAAGGGCACTTCAATTAAAGGGGACCTTTCTACGTTTCTGAGCTTTTTTCCTAAAATTTTATCAAAAAATTCAATGTATYCTTGCTCAAAATTGATGAAAACCTAACAATTGCACCAAAATTGAGCAAGTTTTTAAGCAAAAAAGAGTGTTTAGACAAGAAAAAACGGAAATTGAAGAGCCTTATTATTGAAAAGCCTTTCTATTAAAGGTGGCCTGAGAAAATTTTCCGGAATTCAGATTTACCAGCTTTGGTCCTTTTTAGATCTCATCTCCACGTCATAAATTTCTGATGACGTCAAAAGAATCGGTCAATACTCGACTACTAAATCCTATTCAAATTTTCTTTCTTCCGTAAAACAGAAACTATTCGTAGTATCAAACTGTTCTCTGTATTCTATCTTCTCTTATTCTCTCCCTTTTAAACTCACAATTGGGAACATCATTGCCATTTTTCGACTCGATTCTAGTTGGAGAATGATTCAGCTTGAATATAGCTGAATCAGTATTTTTCTGAATTTCAGACAAAAACACTGCAACTTTATATACCCGCGGTGCTCTGTTCTCGTGCAGACAATATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACCAGTATTAGAAGGACAGG</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAATAATAAGGCTCTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAAACCAGTATTAGAAGGACAGGTCCTTCTACTTGTTTCCAGGTACCTCCGAAGGGCACTTCAATTAAAGGGGACCTTTCTACGTTTCTGAGCTTTTTTCCTAAAATTTTATCAAAAAATTCAATGTATTCTTGCTCAAAATTGATGAAAACCTAACAATTGCACCAAAATTGAGCAAGTTTTTAAGCAAAAAAGAGTGTTTAGACAAGAAAAAACGGAAATTGAAGAGCCTTATTATTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAACCAGTATTAGAAGGACAGGTCCTTCTACTTGTTTCCAGGTACCTCCGAAGGGCACTTCAATTAAAGGGGACCTTTCTACGTTTCTGAGCTTTTTTCCTAAAATTTTATCAAAAAATTCAATGTATYCTTGCTCAAAATTGATGAAAACCTAACAATTGCACCAAAATTGAGCAAGTTTTTAAGCAAAAAAGAGTGTTTAGACAAGAAAAAACGGAAATTGAAGAGCCTTATTATTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37615</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>40211</contig_pos>
        <strand>+</strand>
        <context>TAGACAAGAA[A/C]AAACGGAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCACCAAAATTGAGCAAGTTTTTAAGCAAAAAAGAGTGTTTAGACAAGAA</left_flank>
        <right_flank>AAACGGAAATTGAAGAGCCTTATTATTGAAAAGCCTTTCTATTAAAGGTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGATTAACTTCTATGATCGGTCACTGCGGAATGAAAATGATTGAAAATCTGAAATAACATTACCGATTTCTCAAAACAAAAATTTCGAATTTGAAAACTCGGAAAATCTCCATGTAATTTTCGAGAGATCCTTCTTAAATTGTAGATGCTCAAATTAAAACCATATATTTCAAAACAACCACATTTAAAAGAAAAAGTATGATTAGAGAATTCAGGAATGAGGATTTCAGAGTTTCAATTTTTTGAGGGGTGCTCCTCCATGTGGTGTAAAGCACAAAATTTACCGTAAAACCAGTATTAGAAGGACAGGTCCTTCTACTTGTTTCCAGGTACCTCCGAAGGGCACTTCAATTAAAGGGGACCTTTCTACGTTTCTGAGCTTTTTTCCTAAAATTTTATCAAAAAATTCAATGTATTCTTGCTCAAAATTGATGAAAACCTAACAATTGCACCAAAATTGAGCAAGTTTTTAAGCAAAAAAGAGTGTTTAGACAAGAAAAAACGGAAATTGAAGAGCCTTATTATTGAAAAGCCTTTCTATTAAAGGTGGCCTGAGAAAATTTTCCGGAATTCAGATTTACCAGCTTTGGTCCTTTTTAGATCTCATCTCCACGTCATAAATTTCTGATGACGTCAAAAGAATCGGTCAATACTCGACTACTAAATCCTATTCAAATTTTCTTTCTTCCGTAAAACAGAAACTATTCGTAGTATCAAACTGTTCTCTGTATTCTATCTTCTCTTATTCTCTCCCTTTTAAACTCACAATTGGGAACATCATTGCCATTTTTCGACTCGATTCTAGTTGGAGAATGATTCAGCTTGAATATAGCTGAATCAGTATTTTTCTGAATTTCAGACAAAAACACTGCAACTTTATATACCCGCGGTGCTCTGTTCTCGTGCAGACAATATATGGAAATTATTATTTTTATTATTATCATGTTACCCGATATGAATATGTACAATGTGTTGATCTCACAACGGGTAGTAAGTATC</canonical>
            <polymorphic>AGGATTAACTTCTATGATCGGTCACTGCGGAATGAAAATGATTGAAAATCTGAAATAACATTACCGATTTCTCAAAACAAAAATTTCGAATTTGAAAACTCGGAAAATCTCCATGTAATTTTCGAGAGATCCTTCTTAAATTGTAGATGCTCAAATTAAAACCATATATTTCAAAACAACCACATTTAAAAGAAAAAGTATGATTAGAGAATTCAGGAATGAGGATTTCAGAGTTTCAATTTTTTGAGGGGTGCTCCTCCATGTGGTGTAAAGCACAAAATTTACCGTAAAACCAGTATTAGAAGGACAGGTCCTTCTACTTGTTTCCAGGTACCTCCGAAGGGCACTTCAATTAAAGGGGACCTTTCTACGTTTCTGAGCTTTTTTCCTAAAATTTTATCAAAAAATTCAATGTATTCTTGCTCAAAATTGATGAAAACCTAACAATTGCACCAAAATTGAGCAAGTTTTTAAGCAAAAAAGAGTGTTTAGACAAGAAMAAACGGAAATTGAAGAGCCTTATTATTGAAAAGCCTTTCTATTAAAGGTGGCCTGAGAAAATTTTCCGGAATTCAGATTTACCAGCTTTGGTCCTTTTTAGATCTCATCTCCACGTCATAAATTTCTGATGACGTCAAAAGAATCGGTCAATACTCGACTACTAAATCCTATTCAAATTTTCTTTCTTCCGTAAAACAGAAACTATTCGTAGTATCAAACTGTTCTCTGTATTCTATCTTCTCTTATTCTCTCCCTTTTAAACTCACAATTGGGAACATCATTGCCATTTTTCGACTCGATTCTAGTTGGAGAATGATTCAGCTTGAATATAGCTGAATCAGTATTTTTCTGAATTTCAGACAAAAACACTGCAACTTTATATACCCGCGGTGCTCTGTTCTCGTGCAGACAATATATGGAAATTATTATTTTTATTATTATCATGTTACCCGATATGAATATGTACAATGTGTTGATCTCACAACGGGTAGTAAGTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAAAATTGATGAAAACCTAAC</pcr_primer_p1>
		<pcr_primer_p2>GGATTTAGTAGTCGAGTATTGACC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTCAAAATTGATGAAAACCTAACAATTGCACCAAAATTGAGCAAGTTTTTAAGCAAAAAAGAGTGTTTAGACAAGAAAAAACGGAAATTGAAGAGCCTTATTATTGAAAAGCCTTTCTATTAAAGGTGGCCTGAGAAAATTTTCCGGAATTCAGATTTACCAGCTTTGGTCCTTTTTAGATCTCATCTCCACGTCATAAATTTCTGATGACGTCAAAAGAATCGGTCAATACTCGACTACTAAATCC</canonical_amplicon>
		<polymorphic_amplicon>CTCAAAATTGATGAAAACCTAACAATTGCACCAAAATTGAGCAAGTTTTTAAGCAAAAAAGAGTGTTTAGACAAGAAMAAACGGAAATTGAAGAGCCTTATTATTGAAAAGCCTTTCTATTAAAGGTGGCCTGAGAAAATTTTCCGGAATTCAGATTTACCAGCTTTGGTCCTTTTTAGATCTCATCTCCACGTCATAAATTTCTGATGACGTCAAAAGAATCGGTCAATACTCGACTACTAAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37616</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>40250</contig_pos>
        <strand>+</strand>
        <context>AAAAGCCTTT[A/C]TATTAAAGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTAGACAAGAAAAAACGGAAATTGAAGAGCCTTATTATTGAAAAGCCTTT</left_flank>
        <right_flank>TATTAAAGGTGGCCTGAGAAAATTTTCCGGAATTCAGATTTACCAGCTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTGAAAATCTGAAATAACATTACCGATTTCTCAAAACAAAAATTTCGAATTTGAAAACTCGGAAAATCTCCATGTAATTTTCGAGAGATCCTTCTTAAATTGTAGATGCTCAAATTAAAACCATATATTTCAAAACAACCACATTTAAAAGAAAAAGTATGATTAGAGAATTCAGGAATGAGGATTTCAGAGTTTCAATTTTTTGAGGGGTGCTCCTCCATGTGGTGTAAAGCACAAAATTTACCGTAAAACCAGTATTAGAAGGACAGGTCCTTCTACTTGTTTCCAGGTACCTCCGAAGGGCACTTCAATTAAAGGGGACCTTTCTACGTTTCTGAGCTTTTTTCCTAAAATTTTATCAAAAAATTCAATGTATTCTTGCTCAAAATTGATGAAAACCTAACAATTGCACCAAAATTGAGCAAGTTTTTAAGCAAAAAAGAGTGTTTAGACAAGAAAAAACGGAAATTGAAGAGCCTTATTATTGAAAAGCCTTTCTATTAAAGGTGGCCTGAGAAAATTTTCCGGAATTCAGATTTACCAGCTTTGGTCCTTTTTAGATCTCATCTCCACGTCATAAATTTCTGATGACGTCAAAAGAATCGGTCAATACTCGACTACTAAATCCTATTCAAATTTTCTTTCTTCCGTAAAACAGAAACTATTCGTAGTATCAAACTGTTCTCTGTATTCTATCTTCTCTTATTCTCTCCCTTTTAAACTCACAATTGGGAACATCATTGCCATTTTTCGACTCGATTCTAGTTGGAGAATGATTCAGCTTGAATATAGCTGAATCAGTATTTTTCTGAATTTCAGACAAAAACACTGCAACTTTATATACCCGCGGTGCTCTGTTCTCGTGCAGACAATATATGGAAATTATTATTTTTATTATTATCATGTTACCCGATATGAATATGTACAATGTGTTGATCTCACAACGGGTAGTAAGTATCTGGAAAACACGGAAATTGAGTTGGGGAGGGTTAAAAAAT</canonical>
            <polymorphic>GATTGAAAATCTGAAATAACATTACCGATTTCTCAAAACAAAAATTTCGAATTTGAAAACTCGGAAAATCTCCATGTAATTTTCGAGAGATCCTTCTTAAATTGTAGATGCTCAAATTAAAACCATATATTTCAAAACAACCACATTTAAAAGAAAAAGTATGATTAGAGAATTCAGGAATGAGGATTTCAGAGTTTCAATTTTTTGAGGGGTGCTCCTCCATGTGGTGTAAAGCACAAAATTTACCGTAAAACCAGTATTAGAAGGACAGGTCCTTCTACTTGTTTCCAGGTACCTCCGAAGGGCACTTCAATTAAAGGGGACCTTTCTACGTTTCTGAGCTTTTTTCCTAAAATTTTATCAAAAAATTCAATGTATTCTTGCTCAAAATTGATGAAAACCTAACAATTGCACCAAAATTGAGCAAGTTTTTAAGCAAAAAAGAGTGTTTAGACAAGAAAAAACGGAAATTGAAGAGCCTTATTATTGAAAAGCCTTTMTATTAAAGGTGGCCTGAGAAAATTTTCCGGAATTCAGATTTACCAGCTTTGGTCCTTTTTAGATCTCATCTCCACGTCATAAATTTCTGATGACGTCAAAAGAATCGGTCAATACTCGACTACTAAATCCTATTCAAATTTTCTTTCTTCCGTAAAACAGAAACTATTCGTAGTATCAAACTGTTCTCTGTATTCTATCTTCTCTTATTCTCTCCCTTTTAAACTCACAATTGGGAACATCATTGCCATTTTTCGACTCGATTCTAGTTGGAGAATGATTCAGCTTGAATATAGCTGAATCAGTATTTTTCTGAATTTCAGACAAAAACACTGCAACTTTATATACCCGCGGTGCTCTGTTCTCGTGCAGACAATATATGGAAATTATTATTTTTATTATTATCATGTTACCCGATATGAATATGTACAATGTGTTGATCTCACAACGGGTAGTAAGTATCTGGAAAACACGGAAATTGAGTTGGGGAGGGTTAAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCAAAATTGATGAAAACCTAAC</pcr_primer_p1>
		<pcr_primer_p2>GGATTTAGTAGTCGAGTATTGACC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTCAAAATTGATGAAAACCTAACAATTGCACCAAAATTGAGCAAGTTTTTAAGCAAAAAAGAGTGTTTAGACAAGAAAAAACGGAAATTGAAGAGCCTTATTATTGAAAAGCCTTTCTATTAAAGGTGGCCTGAGAAAATTTTCCGGAATTCAGATTTACCAGCTTTGGTCCTTTTTAGATCTCATCTCCACGTCATAAATTTCTGATGACGTCAAAAGAATCGGTCAATACTCGACTACTAAATCC</canonical_amplicon>
		<polymorphic_amplicon>CTCAAAATTGATGAAAACCTAACAATTGCACCAAAATTGAGCAAGTTTTTAAGCAAAAAAGAGTGTTTAGACAAGAAAAAACGGAAATTGAAGAGCCTTATTATTGAAAAGCCTTTMTATTAAAGGTGGCCTGAGAAAATTTTCCGGAATTCAGATTTACCAGCTTTGGTCCTTTTTAGATCTCATCTCCACGTCATAAATTTCTGATGACGTCAAAAGAATCGGTCAATACTCGACTACTAAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37617</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>40311</contig_pos>
        <strand>+</strand>
        <context>GGTCCTTTTT[A/T]GATCTCATCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGCCTGAGAAAATTTTCCGGAATTCAGATTTACCAGCTTTGGTCCTTTTT</left_flank>
        <right_flank>GATCTCATCTCCACGTCATAAATTTCTGATGACGTCAAAAGAATCGGTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGAAAATCTCCATGTAATTTTCGAGAGATCCTTCTTAAATTGTAGATGCTCAAATTAAAACCATATATTTCAAAACAACCACATTTAAAAGAAAAAGTATGATTAGAGAATTCAGGAATGAGGATTTCAGAGTTTCAATTTTTTGAGGGGTGCTCCTCCATGTGGTGTAAAGCACAAAATTTACCGTAAAACCAGTATTAGAAGGACAGGTCCTTCTACTTGTTTCCAGGTACCTCCGAAGGGCACTTCAATTAAAGGGGACCTTTCTACGTTTCTGAGCTTTTTTCCTAAAATTTTATCAAAAAATTCAATGTATTCTTGCTCAAAATTGATGAAAACCTAACAATTGCACCAAAATTGAGCAAGTTTTTAAGCAAAAAAGAGTGTTTAGACAAGAAAAAACGGAAATTGAAGAGCCTTATTATTGAAAAGCCTTTCTATTAAAGGTGGCCTGAGAAAATTTTCCGGAATTCAGATTTACCAGCTTTGGTCCTTTTTAGATCTCATCTCCACGTCATAAATTTCTGATGACGTCAAAAGAATCGGTCAATACTCGACTACTAAATCCTATTCAAATTTTCTTTCTTCCGTAAAACAGAAACTATTCGTAGTATCAAACTGTTCTCTGTATTCTATCTTCTCTTATTCTCTCCCTTTTAAACTCACAATTGGGAACATCATTGCCATTTTTCGACTCGATTCTAGTTGGAGAATGATTCAGCTTGAATATAGCTGAATCAGTATTTTTCTGAATTTCAGACAAAAACACTGCAACTTTATATACCCGCGGTGCTCTGTTCTCGTGCAGACAATATATGGAAATTATTATTTTTATTATTATCATGTTACCCGATATGAATATGTACAATGTGTTGATCTCACAACGGGTAGTAAGTATCTGGAAAACACGGAAATTGAGTTGGGGAGGGTTAAAAAATAGTACTGGGGGAAGAGAGAAAAACCCGGAAAAAACAACTGAAACATAACAGAGAAATCAGT</canonical>
            <polymorphic>CGGAAAATCTCCATGTAATTTTCGAGAGATCCTTCTTAAATTGTAGATGCTCAAATTAAAACCATATATTTCAAAACAACCACATTTAAAAGAAAAAGTATGATTAGAGAATTCAGGAATGAGGATTTCAGAGTTTCAATTTTTTGAGGGGTGCTCCTCCATGTGGTGTAAAGCACAAAATTTACCGTAAAACCAGTATTAGAAGGACAGGTCCTTCTACTTGTTTCCAGGTACCTCCGAAGGGCACTTCAATTAAAGGGGACCTTTCTACGTTTCTGAGCTTTTTTCCTAAAATTTTATCAAAAAATTCAATGTATTCTTGCTCAAAATTGATGAAAACCTAACAATTGCACCAAAATTGAGCAAGTTTTTAAGCAAAAAAGAGTGTTTAGACAAGAAAAAACGGAAATTGAAGAGCCTTATTATTGAAAAGCCTTTCTATTAAAGGTGGCCTGAGAAAATTTTCCGGAATTCAGATTTACCAGCTTTGGTCCTTTTTWGATCTCATCTCCACGTCATAAATTTCTGATGACGTCAAAAGAATCGGTCAATACTCGACTACTAAATCCTATTCAAATTTTCTTTCTTCCGTAAAACAGAAACTATTCGTAGTATCAAACTGTTCTCTGTATTCTATCTTCTCTTATTCTCTCCCTTTTAAACTCACAATTGGGAACATCATTGCCATTTTTCGACTCGATTCTAGTTGGAGAATGATTCAGCTTGAATATAGCTGAATCAGTATTTTTCTGAATTTCAGACAAAAACACTGCAACTTTATATACCCGCGGTGCTCTGTTCTCGTGCAGACAATATATGGAAATTATTATTTTTATTATTATCATGTTACCCGATATGAATATGTACAATGTGTTGATCTCACAACGGGTAGTAAGTATCTGGAAAACACGGAAATTGAGTTGGGGAGGGTTAAAAAATAGTACTGGGGGAAGAGAGAAAAACCCGGAAAAAACAACTGAAACATAACAGAGAAATCAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>500 473 27</canonical_bands>
                <polymorphic_bands>973 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAAAATTGATGAAAACCTAAC</pcr_primer_p1>
		<pcr_primer_p2>GGATTTAGTAGTCGAGTATTGACC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTCAAAATTGATGAAAACCTAACAATTGCACCAAAATTGAGCAAGTTTTTAAGCAAAAAAGAGTGTTTAGACAAGAAAAAACGGAAATTGAAGAGCCTTATTATTGAAAAGCCTTTCTATTAAAGGTGGCCTGAGAAAATTTTCCGGAATTCAGATTTACCAGCTTTGGTCCTTTTTAGATCTCATCTCCACGTCATAAATTTCTGATGACGTCAAAAGAATCGGTCAATACTCGACTACTAAATCC</canonical_amplicon>
		<polymorphic_amplicon>CTCAAAATTGATGAAAACCTAACAATTGCACCAAAATTGAGCAAGTTTTTAAGCAAAAAAGAGTGTTTAGACAAGAAAAAACGGAAATTGAAGAGCCTTATTATTGAAAAGCCTTTCTATTAAAGGTGGCCTGAGAAAATTTTCCGGAATTCAGATTTACCAGCTTTGGTCCTTTTTWGATCTCATCTCCACGTCATAAATTTCTGATGACGTCAAAAGAATCGGTCAATACTCGACTACTAAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37618</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>40338</contig_pos>
        <strand>+</strand>
        <context>CATAAATTTC[C/T]GATGACGTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTACCAGCTTTGGTCCTTTTTAGATCTCATCTCCACGTCATAAATTTC</left_flank>
        <right_flank>GATGACGTCAAAAGAATCGGTCAATACTCGACTACTAAATCCTATTCAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCCTTCTTAAATTGTAGATGCTCAAATTAAAACCATATATTTCAAAACAACCACATTTAAAAGAAAAAGTATGATTAGAGAATTCAGGAATGAGGATTTCAGAGTTTCAATTTTTTGAGGGGTGCTCCTCCATGTGGTGTAAAGCACAAAATTTACCGTAAAACCAGTATTAGAAGGACAGGTCCTTCTACTTGTTTCCAGGTACCTCCGAAGGGCACTTCAATTAAAGGGGACCTTTCTACGTTTCTGAGCTTTTTTCCTAAAATTTTATCAAAAAATTCAATGTATTCTTGCTCAAAATTGATGAAAACCTAACAATTGCACCAAAATTGAGCAAGTTTTTAAGCAAAAAAGAGTGTTTAGACAAGAAAAAACGGAAATTGAAGAGCCTTATTATTGAAAAGCCTTTCTATTAAAGGTGGCCTGAGAAAATTTTCCGGAATTCAGATTTACCAGCTTTGGTCCTTTTTAGATCTCATCTCCACGTCATAAATTTCTGATGACGTCAAAAGAATCGGTCAATACTCGACTACTAAATCCTATTCAAATTTTCTTTCTTCCGTAAAACAGAAACTATTCGTAGTATCAAACTGTTCTCTGTATTCTATCTTCTCTTATTCTCTCCCTTTTAAACTCACAATTGGGAACATCATTGCCATTTTTCGACTCGATTCTAGTTGGAGAATGATTCAGCTTGAATATAGCTGAATCAGTATTTTTCTGAATTTCAGACAAAAACACTGCAACTTTATATACCCGCGGTGCTCTGTTCTCGTGCAGACAATATATGGAAATTATTATTTTTATTATTATCATGTTACCCGATATGAATATGTACAATGTGTTGATCTCACAACGGGTAGTAAGTATCTGGAAAACACGGAAATTGAGTTGGGGAGGGTTAAAAAATAGTACTGGGGGAAGAGAGAAAAACCCGGAAAAAACAACTGAAACATAACAGAGAAATCAGTAGGGAAAGAAGGAACGTGTCAACGATT</canonical>
            <polymorphic>GATCCTTCTTAAATTGTAGATGCTCAAATTAAAACCATATATTTCAAAACAACCACATTTAAAAGAAAAAGTATGATTAGAGAATTCAGGAATGAGGATTTCAGAGTTTCAATTTTTTGAGGGGTGCTCCTCCATGTGGTGTAAAGCACAAAATTTACCGTAAAACCAGTATTAGAAGGACAGGTCCTTCTACTTGTTTCCAGGTACCTCCGAAGGGCACTTCAATTAAAGGGGACCTTTCTACGTTTCTGAGCTTTTTTCCTAAAATTTTATCAAAAAATTCAATGTATTCTTGCTCAAAATTGATGAAAACCTAACAATTGCACCAAAATTGAGCAAGTTTTTAAGCAAAAAAGAGTGTTTAGACAAGAAAAAACGGAAATTGAAGAGCCTTATTATTGAAAAGCCTTTCTATTAAAGGTGGCCTGAGAAAATTTTCCGGAATTCAGATTTACCAGCTTTGGTCCTTTTTAGATCTCATCTCCACGTCATAAATTTCYGATGACGTCAAAAGAATCGGTCAATACTCGACTACTAAATCCTATTCAAATTTTCTTTCTTCCGTAAAACAGAAACTATTCGTAGTATCAAACTGTTCTCTGTATTCTATCTTCTCTTATTCTCTCCCTTTTAAACTCACAATTGGGAACATCATTGCCATTTTTCGACTCGATTCTAGTTGGAGAATGATTCAGCTTGAATATAGCTGAATCAGTATTTTTCTGAATTTCAGACAAAAACACTGCAACTTTATATACCCGCGGTGCTCTGTTCTCGTGCAGACAATATATGGAAATTATTATTTTTATTATTATCATGTTACCCGATATGAATATGTACAATGTGTTGATCTCACAACGGGTAGTAAGTATCTGGAAAACACGGAAATTGAGTTGGGGAGGGTTAAAAAATAGTACTGGGGGAAGAGAGAAAAACCCGGAAAAAACAACTGAAACATAACAGAGAAATCAGTAGGGAAAGAAGGAACGTGTCAACGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTGAGCAAGTTTTTAAGC</pcr_primer_p1>
		<pcr_primer_p2>CTGTTTTACGGAAGAAAGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAAATTGAGCAAGTTTTTAAGCAAAAAAGAGTGTTTAGACAAGAAAAAACGGAAATTGAAGAGCCTTATTATTGAAAAGCCTTTCTATTAAAGGTGGCCTGAGAAAATTTTCCGGAATTCAGATTTACCAGCTTTGGTCCTTTTTAGATCTCATCTCCACGTCATAAATTTCTGATGACGTCAAAAGAATCGGTCAATACTCGACTACTAAATCCTATTCAAATTTTCTTTCTTCCGTAAAACAG</canonical_amplicon>
		<polymorphic_amplicon>AAAATTGAGCAAGTTTTTAAGCAAAAAAGAGTGTTTAGACAAGAAAAAACGGAAATTGAAGAGCCTTATTATTGAAAAGCCTTTCTATTAAAGGTGGCCTGAGAAAATTTTCCGGAATTCAGATTTACCAGCTTTGGTCCTTTTTAGATCTCATCTCCACGTCATAAATTTCYGATGACGTCAAAAGAATCGGTCAATACTCGACTACTAAATCCTATTCAAATTTTCTTTCTTCCGTAAAACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37619</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>40452</contig_pos>
        <strand>+</strand>
        <context>ATTCTATCTT[C/T]TCTTATTCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTAAAACAGAAACTATTCGTAGTATCAAACTGTTCTCTGTATTCTATCTT</left_flank>
        <right_flank>TCTTATTCTCTCCCTTTTAAACTCACAATTGGGAACATCATTGCCATTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGAGGGGTGCTCCTCCATGTGGTGTAAAGCACAAAATTTACCGTAAAACCAGTATTAGAAGGACAGGTCCTTCTACTTGTTTCCAGGTACCTCCGAAGGGCACTTCAATTAAAGGGGACCTTTCTACGTTTCTGAGCTTTTTTCCTAAAATTTTATCAAAAAATTCAATGTATTCTTGCTCAAAATTGATGAAAACCTAACAATTGCACCAAAATTGAGCAAGTTTTTAAGCAAAAAAGAGTGTTTAGACAAGAAAAAACGGAAATTGAAGAGCCTTATTATTGAAAAGCCTTTCTATTAAAGGTGGCCTGAGAAAATTTTCCGGAATTCAGATTTACCAGCTTTGGTCCTTTTTAGATCTCATCTCCACGTCATAAATTTCTGATGACGTCAAAAGAATCGGTCAATACTCGACTACTAAATCCTATTCAAATTTTCTTTCTTCCGTAAAACAGAAACTATTCGTAGTATCAAACTGTTCTCTGTATTCTATCTTCTCTTATTCTCTCCCTTTTAAACTCACAATTGGGAACATCATTGCCATTTTTCGACTCGATTCTAGTTGGAGAATGATTCAGCTTGAATATAGCTGAATCAGTATTTTTCTGAATTTCAGACAAAAACACTGCAACTTTATATACCCGCGGTGCTCTGTTCTCGTGCAGACAATATATGGAAATTATTATTTTTATTATTATCATGTTACCCGATATGAATATGTACAATGTGTTGATCTCACAACGGGTAGTAAGTATCTGGAAAACACGGAAATTGAGTTGGGGAGGGTTAAAAAATAGTACTGGGGGAAGAGAGAAAAACCCGGAAAAAACAACTGAAACATAACAGAGAAATCAGTAGGGAAAGAAGGAACGTGTCAACGATTAAAAATCGAGATCTGGTTGGTACTCGGCGTCGGCGAATTCAGAATTGTGCTTTGTTTTTGATGGAATTTCTCTGAAATTTTATATCGTCAAAAGTATTGCGAGATATACAATTC</canonical>
            <polymorphic>TTTTGAGGGGTGCTCCTCCATGTGGTGTAAAGCACAAAATTTACCGTAAAACCAGTATTAGAAGGACAGGTCCTTCTACTTGTTTCCAGGTACCTCCGAAGGGCACTTCAATTAAAGGGGACCTTTCTACGTTTCTGAGCTTTTTTCCTAAAATTTTATCAAAAAATTCAATGTATTCTTGCTCAAAATTGATGAAAACCTAACAATTGCACCAAAATTGAGCAAGTTTTTAAGCAAAAAAGAGTGTTTAGACAAGAAAAAACGGAAATTGAAGAGCCTTATTATTGAAAAGCCTTTCTATTAAAGGTGGCCTGAGAAAATTTTCCGGAATTCAGATTTACCAGCTTTGGTCCTTTTTAGATCTCATCTCCACGTCATAAATTTCTGATGACGTCAAAAGAATCGGTCAATACTCGACTACTAAATCCTATTCAAATTTTCTTTCTTCCGTAAAACAGAAACTATTCGTAGTATCAAACTGTTCTCTGTATTCTATCTTYTCTTATTCTCTCCCTTTTAAACTCACAATTGGGAACATCATTGCCATTTTTCGACTCGATTCTAGTTGGAGAATGATTCAGCTTGAATATAGCTGAATCAGTATTTTTCTGAATTTCAGACAAAAACACTGCAACTTTATATACCCGCGGTGCTCTGTTCTCGTGCAGACAATATATGGAAATTATTATTTTTATTATTATCATGTTACCCGATATGAATATGTACAATGTGTTGATCTCACAACGGGTAGTAAGTATCTGGAAAACACGGAAATTGAGTTGGGGAGGGTTAAAAAATAGTACTGGGGGAAGAGAGAAAAACCCGGAAAAAACAACTGAAACATAACAGAGAAATCAGTAGGGAAAGAAGGAACGTGTCAACGATTAAAAATCGAGATCTGGTTGGTACTCGGCGTCGGCGAATTCAGAATTGTGCTTTGTTTTTGATGGAATTTCTCTGAAATTTTATATCGTCAAAAGTATTGCGAGATATACAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAAGAATCGGTCAATACTC</pcr_primer_p1>
		<pcr_primer_p2>ATAAAGTTGCAGTGTTTTTGTCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCAAAAGAATCGGTCAATACTCGACTACTAAATCCTATTCAAATTTTCTTTCTTCCGTAAAACAGAAACTATTCGTAGTATCAAACTGTTCTCTGTATTCTATCTTCTCTTATTCTCTCCCTTTTAAACTCACAATTGGGAACATCATTGCCATTTTTCGACTCGATTCTAGTTGGAGAATGATTCAGCTTGAATATAGCTGAATCAGTATTTTTCTGAATTTCAGACAAAAACACTGCAACTTTAT</canonical_amplicon>
		<polymorphic_amplicon>TCAAAAGAATCGGTCAATACTCGACTACTAAATCCTATTCAAATTTTCTTTCTTCCGTAAAACAGAAACTATTCGTAGTATCAAACTGTTCTCTGTATTCTATCTTYTCTTATTCTCTCCCTTTTAAACTCACAATTGGGAACATCATTGCCATTTTTCGACTCGATTCTAGTTGGAGAATGATTCAGCTTGAATATAGCTGAATCAGTATTTTTCTGAATTTCAGACAAAAACACTGCAACTTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37620</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>165174</contig_pos>
        <strand>+</strand>
        <context>CTGCTTTTGT[C/T]GTTGAGAACG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCCTTGCTCATAAAGCAACGCTACTGCCAGAGCTGCTGCTGCTTTTGT</left_flank>
        <right_flank>GTTGAGAACGTCACAGTTATTGTGTCCTGTAAATATGTGTTCTGTGTCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTCGGAAAGAGGAAGACCGATGTGATAGTCAACGTCTAAAACAGCAAATCACATAGGTGTCTTCAAGCCAAAACTAACCTAGTTTCGATGCGATTTCTTCTCTGAAATACTGCCCGATTCCTCTTTTTCTGTCGTCTGTGTGTCTGACGATTTGATCAACCAGCCATCCGTAGGTGTATGCATGGTATCCTGTCTTTGTTCCTGGAGCCCACTTCGGCTCTTCTTTCTCTATAATCTGTCGCATTTGCTCATGATCTGCTGCGATCTCCTCAGTGATTGGTGTATCAAACCATGCCATTCCAGACTAAAATTGAAGATGGATAAGATAATTTTGAATCGTTTTTTTTTCTTACCATATGTGATAATGCCATTTGAATAGTGACATTGTCTCTTCCGTGAGTTCCAAAACCAGGCCAATACTTGGATACAGGGTCATCGTAACTCAGTTTTCCTTGCTCATAAAGCAACGCTACTGCCAGAGCTGCTGCTGCTTTTGTTGTTGAGAACGTCACAGTTATTGTGTCCTGTAAATATGTGTTCTGTGTCATACTCTTTAGTTTGTTTCGTCAGAAAACGTCCTTTTTTATTACCTCTTTTTTTTGGAATCGAAAGAATTGGGAAATAAACTTTGATATTAACCCACGATATCAGTTCCTGTTATCAACGCTATCACTTTTAACGATGGAAAATAGATTTGTGAGCACTACCTTGAAAAGTGATAATTTATGCGAAAAGAGGCAAAAACGAATAAGAAAACTGGATCGTTTGATGGTATTGATCATCTCAATGTTGACTACTTATTTTTTCAAACCGGTTCCTAACCTCGGCCCATTTTCTGGCGGCTTGTTTATCTGCATATCCTCCCCACAAATCCACAACTTTCTTTCCATCAACGAACACGGCAAATGCGGATCCTTCGCTTTCCCAACCTTTTTCGAAGTTTTTCCTGAAAACTTTTTCGTTTTTCAATGTTTCTAAAAGAGAGGAAAAAAGTTGAC</canonical>
            <polymorphic>TGTTCGGAAAGAGGAAGACCGATGTGATAGTCAACGTCTAAAACAGCAAATCACATAGGTGTCTTCAAGCCAAAACTAACCTAGTTTCGATGCGATTTCTTCTCTGAAATACTGCCCGATTCCTCTTTTTCTGTCGTCTGTGTGTCTGACGATTTGATCAACCAGCCATCCGTAGGTGTATGCATGGTATCCTGTCTTTGTTCCTGGAGCCCACTTCGGCTCTTCTTTCTCTATAATCTGTCGCATTTGCTCATGATCTGCTGCGATCTCCTCAGTGATTGGTGTATCAAACCATGCCATTCCAGACTAAAATTGAAGATGGATAAGATAATTTTGAATCGTTTTTTTTTCTTACCATATGTGATAATGCCATTTGAATAGTGACATTGTCTCTTCCGTGAGTTCCAAAACCAGGCCAATACTTGGATACAGGGTCATCGTAACTCAGTTTTCCTTGCTCATAAAGCAACGCTACTGCCAGAGCTGCTGCTGCTTTTGTYGTTGAGAACGTCACAGTTATTGTGTCCTGTAAATATGTGTTCTGTGTCATACTCTTTAGTTTGTTTCGTCAGAAAACGTCCTTTTTTATTACCTCTTTTTTTTGGAATCGAAAGAATTGGGAAATAAACTTTGATATTAACCCACGATATCAGTTCCTGTTATCAACGCTATCACTTTTAACGATGGAAAATAGATTTGTGAGCACTACCTTGAAAAGTGATAATTTATGCGAAAAGAGGCAAAAACGAATAAGAAAACTGGATCGTTTGATGGTATTGATCATCTCAATGTTGACTACTTATTTTTTCAAACCGGTTCCTAACCTCGGCCCATTTTCTGGCGGCTTGTTTATCTGCATATCCTCCCCACAAATCCACAACTTTCTTTCCATCAACGAACACGGCAAATGCGGATCCTTCGCTTTCCCAACCTTTTTCGAAGTTTTTCCTGAAAACTTTTTCGTTTTTCAATGTTTCTAAAAGAGAGGAAAAAAGTTGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACTCAGTTTTCCTTGCTCATA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCCATCGTTAAAAGTGATAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAACTCAGTTTTCCTTGCTCATAAAGCAACGCTACTGCCAGAGCTGCTGCTGCTTTTGTTGTTGAGAACGTCACAGTTATTGTGTCCTGTAAATATGTGTTCTGTGTCATACTCTTTAGTTTGTTTCGTCAGAAAACGTCCTTTTTTATTACCTCTTTTTTTTGGAATCGAAAGAATTGGGAAATAAACTTTGATATTAACCCACGATATCAGTTCCTGTTATCAACGCTATCACTTTTAACGATGGAAAA</canonical_amplicon>
		<polymorphic_amplicon>TAACTCAGTTTTCCTTGCTCATAAAGCAACGCTACTGCCAGAGCTGCTGCTGCTTTTGTYGTTGAGAACGTCACAGTTATTGTGTCCTGTAAATATGTGTTCTGTGTCATACTCTTTAGTTTGTTTCGTCAGAAAACGTCCTTTTTTATTACCTCTTTTTTTTGGAATCGAAAGAATTGGGAAATAAACTTTGATATTAACCCACGATATCAGTTCCTGTTATCAACGCTATCACTTTTAACGATGGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37621</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>250612</contig_pos>
        <strand>+</strand>
        <context>TTATGACATG[A/G]CCTGCTGCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGGTAATGACACGGGGAGGAACAACTTTGGAAACGAGAGTTATGACATG</left_flank>
        <right_flank>CCTGCTGCTCAAATAAAGAGTTTGTACAGCAGCATCAGCAACAGCATTTT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTTTATTCTTTCAATCAACAATGGGAATGTAGGAAGTTGTTAAAAATAATCAAGATTATTTGCGACTGAGAACATCCATAATTGATCTCTTCTTACGAATGTCTCCTGGTCCTGGAAGAATACCAAAAATGTGAATTTGTTCGATCGGACCATCTCCAGAACCAGAACCCTCTTCTTCAACGATGACACCCTGAATTAAAAAAAGGCTTGCTATTTGGAGTTTAGAGATTCTAAACCAACTTCTCCGATTATCTCTTCTGAAGAGGACGATGAAGGATCTTCAAGAGAAATCACGGAATCACCAGAGTCTGCCGACTCATCATACTGTCCTAAAGTTTAAAAATTCGAATAGAACTATTTTTCTAAAGAATCACCGAAAACAGTGGAGATTGTGACGATGAGTAGGAAGAATAAGACGAGCGATCTCATAGCGTCGGAGCCCAATTAATGGTAATGACACGGGGAGGAACAACTTTGGAAACGAGAGTTATGACATGACCTGCTGCTCAAATAAAGAGTTTGTACAGCAGCATCAGCAACAGCATTTTTCCATGGTTCCGCTGGTTTTGATGAGAAAAACGAACCATTTTCAGTCAATATTTGATTTTAATGTTGAAGAAGACACATGCTAGACGCTTTGTCGAAAAAAATTTGACATTTATCACGGAATTTTTAATGCAATTTGAATGAAAGAGGTGTTTCTCTGGAAAACAATTGGAATACTGCATCTATCGTACTCGTGTTCACTTGGGTTCAAGGGAGCTGGTCAGAAAAGGCGCCCCAGGAAACCCGTAGAAGAAATTTAATAATTTCAATATGGACGCGGGTTTGATCTAGATCATGATCTATTTCTTCAAAATCAACGCGCTTTTTCGCTCATCGCTTAAAACTTTTAAACTCAGCTAACGAAGTTTGCACGGTGTTTCAAAGAACCTGGTCAAAAAACGCGCCCCAGAAAACGTTTAGGCCAGACGAAATTTAATAATTCAAAGGTGACG</canonical>
            <polymorphic>TGCTTTATTCTTTCAATCAACAATGGGAATGTAGGAAGTTGTTAAAAATAATCAAGATTATTTGCGACTGAGAACATCCATAATTGATCTCTTCTTACGAATGTCTCCTGGTCCTGGAAGAATACCAAAAATGTGAATTTGTTCGATCGGACCATCTCCAGAACCAGAACCCTCTTCTTCAACGATGACACCCTGAATTAAAAAAAGGCTTGCTATTTGGAGTTTAGAGATTCTAAACCAACTTCTCCGATTATCTCTTCTGAAGAGGACGATGAAGGATCTTCAAGAGAAATCACGGAATCACCAGAGTCTGCCGACTCATCATACTGTCCTAAAGTTTAAAAATTCGAATAGAACTATTTTTCTAAAGAATCACCGAAAACAGTGGAGATTGTGACGATGAGTAGGAAGAATAAGACGAGCGATCTCATAGCGTCGGAGCCCAATTAATGGTAATGACACGGGGAGGAACAACTTTGGAAACGAGAGTTATGACATGRCCTGCTGCTCAAATAAAGAGTTTGTACAGCAGCATCAGCAACAGCATTTTTCCATGGTTCCGCTGGTTTTGATGAGAAAAACGAACCATTTTCAGTCAATATTTGATTTTAATGTTGAAGAAGACACATGCTAGACGCTTTGTCGAAAAAAATTTGACATTTATCACGGAATTTTTAATGCAATTTGAATGAAAGAGGTGTTTCTCTGGAAAACAATTGGAATACTGCATCTATCGTACTCGTGTTCACTTGGGTTCAAGGGAGCTGGTCAGAAAAGGCGCCCCAGGAAACCCGTAGAAGAAATTTAATAATTTCAATATGGACGCGGGTTTGATCTAGATCATGATCTATTTCTTCAAAATCAACGCGCTTTTTCGCTCATCGCTTAAAACTTTTAAACTCAGCTAACGAAGTTTGCACGGTGTTTCAAAGAACCTGGTCAAAAAACGCGCCCCAGAAAACGTTTAGGCCAGACGAAATTTAATAATTCAAAGGTGACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTAAAGAATCACCGAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CAAATATTGACTGAAAATGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTTCTAAAGAATCACCGAAAACAGTGGAGATTGTGACGATGAGTAGGAAGAATAAGACGAGCGATCTCATAGCGTCGGAGCCCAATTAATGGTAATGACACGGGGAGGAACAACTTTGGAAACGAGAGTTATGACATGACCTGCTGCTCAAATAAAGAGTTTGTACAGCAGCATCAGCAACAGCATTTTTCCATGGTTCCGCTGGTTTTGATGAGAAAAACGAACCATTTTCAGTCAATATTTG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTAAAGAATCACCGAAAACAGTGGAGATTGTGACGATGAGTAGGAAGAATAAGACGAGCGATCTCATAGCGTCGGAGCCCAATTAATGGTAATGACACGGGGAGGAACAACTTTGGAAACGAGAGTTATGACATGRCCTGCTGCTCAAATAAAGAGTTTGTACAGCAGCATCAGCAACAGCATTTTTCCATGGTTCCGCTGGTTTTGATGAGAAAAACGAACCATTTTCAGTCAATATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37623</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>295054</contig_pos>
        <strand>+</strand>
        <context>GAGACGCCGC[A/G]GGATACAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTTAGAAACTTATATTTTCATTTAGTAAGATTCGAATGGAGACGCCGC</left_flank>
        <right_flank>GGATACAGAAACTATCTCTAATTGAAGAAAATAATAGTAGAATTTTGAAT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATAAAGTGGGTTTTTTTAAACTTCTGAATTTAAACTTGCCTTGTTTTGTTCAGGATGGCCACCTTCAGCCCGGGGACCATATTTTGCAAATAGGCAATATTAACACGCATGGGATGAGCAGTCAACAAGTGAGTTTTTTGGTTTTCAAAAACTGAAAAAAACAGTCCGCGAAAGTATAATTATAGTTGGACCATACAAAAAAATTTCAAAAATTGATTCCATTGTCCTGGGGGATCGCTCGAAGAATGAAAAATATTGACTGGATGAAATTAATGACCCGCCGAAAGACACAAACAAAAATTATTATGGAATGCTATTGTTGTCTGGAAAGCCAGACATTCCCTTTTTTTGAAAAATTTTAGCTTTGAGAGTGTTCTGGTAGTCTCAAAATGTAGCAAAACCGCAAAAGTTATAAATTTCTAAAATATGAATTTGATTAAATCAAAATTGTTTAGAAACTTATATTTTCATTTAGTAAGATTCGAATGGAGACGCCGCGGGATACAGAAACTATCTCTAATTGAAGAAAATAATAGTAGAATTTTGAATTTAAGAATCCAAAGAAGTTCGATTTGCAATTTTGAGCTTCATTCAGAGTATAGTTCCATTTTTTAAAACTATGCGATTCTAAAAATTGACAGATTGATAGTTTCAATATCGTTTCAATTTTAGTAGTTTCCATGATTATCCTTTTGTCTATCTAATTTAGAGTCTGAAAAGATATTACCTGAAACATACGTTATCTTAAGATCCCCCAGATTTTAGATCCCTTTAAGATCTCCCAGATCTTTAATACCATAAAGATCCAAAACCGTTCCATGATTTTGAAATCGCAGCAAACTAGACTCGCAAAAAGTCAAAAGACTCGAAACTCAAATCAGACTACAATTCCAGGTTGCTACGATTCTTCGACATCAACATCCAACCGTAGATATGATTGTTGGACGACCGATTGCATATGCAGACAAACCAGTTGACACTCCAGGTACTTTTTTCTAA</canonical>
            <polymorphic>GATAAAGTGGGTTTTTTTAAACTTCTGAATTTAAACTTGCCTTGTTTTGTTCAGGATGGCCACCTTCAGCCCGGGGACCATATTTTGCAAATAGGCAATATTAACACGCATGGGATGAGCAGTCAACAAGTGAGTTTTTTGGTTTTCAAAAACTGAAAAAAACAGTCCGCGAAAGTATAATTATAGTTGGACCATACAAAAAAATTTCAAAAATTGATTCCATTGTCCTGGGGGATCGCTCGAAGAATGAAAAATATTGACTGGATGAAATTAATGACCCGCCGAAAGACACAAACAAAAATTATTATGGAATGCTATTGTTGTCTGGAAAGCCAGACATTCCCTTTTTTTGAAAAATTTTAGCTTTGAGAGTGTTCTGGTAGTCTCAAAATGTAGCAAAACCGCAAAAGTTATAAATTTCTAAAATATGAATTTGATTAAATCAAAATTGTTTAGAAACTTATATTTTCATTTAGTAAGATTCGAATGGAGACGCCGCRGGATACAGAAACTATCTCTAATTGAAGAAAATAATAGTAGAATTTTGAATTTAAGAATCCAAAGAAGTTCGATTTGCAATTTTGAGCTTCATTCAGAGTATAGTTCCATTTTTTAAAACTATGCGATTCTAAAAATTGACAGATTGATAGTTTCAATATCGTTTCAATTTTAGTAGTTTCCATGATTATCCTTTTGTCTATCTAATTTAGAGTCTGAAAAGATATTACCTGAAACATACGTTATCTTAAGATCCCCCAGATTTTAGATCCCTTTAAGATCTCCCAGATCTTTAATACCATAAAGATCCAAAACCGTTCCATGATTTTGAAATCGCAGCAAACTAGACTCGCAAAAAGTCAAAAGACTCGAAACTCAAATCAGACTACAATTCCAGGTTGCTACGATTCTTCGACATCAACATCCAACCGTAGATATGATTGTTGGACGACCGATTGCATATGCAGACAAACCAGTTGACACTCCAGGTACTTTTTTCTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 329 169</canonical_bands>
                <polymorphic_bands>831 169</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>504 269 156 70 1</canonical_bands>
                <polymorphic_bands>773 156 70 1</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGCGG</site>
                <isoschizomers>
                    <enzyme>Cfr42I</enzyme>
                    <enzyme>KspI</enzyme>
                    <enzyme>SacII</enzyme>
                    <enzyme>Sfr303I</enzyme>
                    <enzyme>SgrBI</enzyme>
                    <enzyme>SstII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGAGAGTGTTCTGGTAGTCTC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATGGAACTATACTCTGAATGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTGAGAGTGTTCTGGTAGTCTCAAAATGTAGCAAAACCGCAAAAGTTATAAATTTCTAAAATATGAATTTGATTAAATCAAAATTGTTTAGAAACTTATATTTTCATTTAGTAAGATTCGAATGGAGACGCCGCGGGATACAGAAACTATCTCTAATTGAAGAAAATAATAGTAGAATTTTGAATTTAAGAATCCAAAGAAGTTCGATTTGCAATTTTGAGCTTCATTCAGAGTATAGTTCCATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAGAGTGTTCTGGTAGTCTCAAAATGTAGCAAAACCGCAAAAGTTATAAATTTCTAAAATATGAATTTGATTAAATCAAAATTGTTTAGAAACTTATATTTTCATTTAGTAAGATTCGAATGGAGACGCCGCRGGATACAGAAACTATCTCTAATTGAAGAAAATAATAGTAGAATTTTGAATTTAAGAATCCAAAGAAGTTCGATTTGCAATTTTGAGCTTCATTCAGAGTATAGTTCCATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37624</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>361991</contig_pos>
        <strand>+</strand>
        <context>ATCAGGATTA[C/T]GATATTAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATAAAAATATCAAAATAAGATTTTAAAAATCATTTTTCAATCAGGATTA</left_flank>
        <right_flank>GATATTAAAACATAGAGTTATCCCAAAGACAGTTCTGGTCAATCCCTATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTTCTCCATCGTTTATTGGCCCAATCGGCAGTCTATTGAGGGGGTTTCAGCAGCACTTTGAAGATAACAAACATATGCTTTTTCCCCCCGCTTTTTTTCATTTTGATTTTCTTTTTGTTTCATTCATTTTACTATTCAATTCCAGATGTTACTCCATATCTCTCTTCTTCTCATTCTTCCATCTGACACGCTCGCACTGGTTGATTGTTTGGCTGGATTTGTTGGAAGGATGCAGGTCAGTCTTGGATCCTATCATTTTTCTAATCATGTTTGATGAAACCATATCTCATTGTAGATCTAGAGAAATGCAATCCTATTTTTCATGTTCTAATAGCCCCACTGGGAAAGCACGAAAAGAAAGCAGAAAGAAGGAAAGCAGGAGAGATTTTGCGGGTTATGGGTGTGTTCCGAAATTTGAAAAGAGAGAGAAATTCGAATCGTTTACAACATAAAAATATCAAAATAAGATTTTAAAAATCATTTTTCAATCAGGATTATGATATTAAAACATAGAGTTATCCCAAAGACAGTTCTGGTCAATCCCTATTTTCAGAAGCCAGTTTTAGACCCAAGGTAAAAATTGTTTTTCAGAACTTTAAATTTTTGTTAAAAAATAAAGTATCCGAACTAAACCAAGCTTTACAGTTGAGTTCAAGTCAACTGTATTTTTTCAGCCGAGTTACAGATGAAACAATTCTTCGAAATTTGGATTTTCCCCTCGTTTTTGATTTTCTCAGATTTCAAAGATTTATTTTTCATGTTTTGGTCTCTTTGACACTCAATATTCTGAAACTCGGCTGAAAAAACTCCAATCGACCTAGAATCAGATGGAATTCATTTTTAGATTTTGAATTTTATTTTAACACAAAAATAAGGTTTTGATTAATCTACAAAAATGTTGGTTTTTTATCTAAACTTTAGACCCCAAATGTCGAAAAACCTGAAATTTTCCGAGTTCTAGCTTGTCTTCAAAAATAAAAGCAAACATTTTGAGTGTT</canonical>
            <polymorphic>CTCTTCTCCATCGTTTATTGGCCCAATCGGCAGTCTATTGAGGGGGTTTCAGCAGCACTTTGAAGATAACAAACATATGCTTTTTCCCCCCGCTTTTTTTCATTTTGATTTTCTTTTTGTTTCATTCATTTTACTATTCAATTCCAGATGTTACTCCATATCTCTCTTCTTCTCATTCTTCCATCTGACACGCTCGCACTGGTTGATTGTTTGGCTGGATTTGTTGGAAGGATGCAGGTCAGTCTTGGATCCTATCATTTTTCTAATCATGTTTGATGAAACCATATCTCATTGTAGATCTAGAGAAATGCAATCCTATTTTTCATGTTCTAATAGCCCCACTGGGAAAGCACGAAAAGAAAGCAGAAAGAAGGAAAGCAGGAGAGATTTTGCGGGTTATGGGTGTGTTCCGAAATTTGAAAAGAGAGAGAAATTCGAATCGTTTACAACATAAAAATATCAAAATAAGATTTTAAAAATCATTTTTCAATCAGGATTAYGATATTAAAACATAGAGTTATCCCAAAGACAGTTCTGGTCAATCCCTATTTTCAGAAGCCAGTTTTAGACCCAAGGTAAAAATTGTTTTTCAGAACTTTAAATTTTTGTTAAAAAATAAAGTATCCGAACTAAACCAAGCTTTACAGTTGAGTTCAAGTCAACTGTATTTTTTCAGCCGAGTTACAGATGAAACAATTCTTCGAAATTTGGATTTTCCCCTCGTTTTTGATTTTCTCAGATTTCAAAGATTTATTTTTCATGTTTTGGTCTCTTTGACACTCAATATTCTGAAACTCGGCTGAAAAAACTCCAATCGACCTAGAATCAGATGGAATTCATTTTTAGATTTTGAATTTTATTTTAACACAAAAATAAGGTTTTGATTAATCTACAAAAATGTTGGTTTTTTATCTAAACTTTAGACCCCAAATGTCGAAAAACCTGAAATTTTCCGAGTTCTAGCTTGTCTTCAAAAATAAAAGCAAACATTTTGAGTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAAATTTGAAAAGAGAGAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCAACTGTAAAGCTTGGTTTAGT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CGAAATTTGAAAAGAGAGAGAAATTCGAATCGTTTACAACATAAAAATATCAAAATAAGATTTTAAAAATCATTTTTCAATCAGGATTATGATATTAAAACATAGAGTTATCCCAAAGACAGTTCTGGTCAATCCCTATTTTCAGAAGCCAGTTTTAGACCCAAGGTAAAAATTGTTTTTCAGAACTTTAAATTTTTGTTAAAAAATAAAGTATCCGAACTAAACCAAGCTTTACAGTTGA</canonical_amplicon>
		<polymorphic_amplicon>CGAAATTTGAAAAGAGAGAGAAATTCGAATCGTTTACAACATAAAAATATCAAAATAAGATTTTAAAAATCATTTTTCAATCAGGATTAYGATATTAAAACATAGAGTTATCCCAAAGACAGTTCTGGTCAATCCCTATTTTCAGAAGCCAGTTTTAGACCCAAGGTAAAAATTGTTTTTCAGAACTTTAAATTTTTGTTAAAAAATAAAGTATCCGAACTAAACCAAGCTTTACAGTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37625</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>362118</contig_pos>
        <strand>+</strand>
        <context>TAAAGTATCC[A/G]AACTAAACCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAAAATTGTTTTTCAGAACTTTAAATTTTTGTTAAAAAATAAAGTATCC</left_flank>
        <right_flank>AACTAAACCAAGCTTTACAGTTGAGTTCAAGTCAACTGTATTTTTTCAGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTACTATTCAATTCCAGATGTTACTCCATATCTCTCTTCTTCTCATTCTTCCATCTGACACGCTCGCACTGGTTGATTGTTTGGCTGGATTTGTTGGAAGGATGCAGGTCAGTCTTGGATCCTATCATTTTTCTAATCATGTTTGATGAAACCATATCTCATTGTAGATCTAGAGAAATGCAATCCTATTTTTCATGTTCTAATAGCCCCACTGGGAAAGCACGAAAAGAAAGCAGAAAGAAGGAAAGCAGGAGAGATTTTGCGGGTTATGGGTGTGTTCCGAAATTTGAAAAGAGAGAGAAATTCGAATCGTTTACAACATAAAAATATCAAAATAAGATTTTAAAAATCATTTTTCAATCAGGATTATGATATTAAAACATAGAGTTATCCCAAAGACAGTTCTGGTCAATCCCTATTTTCAGAAGCCAGTTTTAGACCCAAGGTAAAAATTGTTTTTCAGAACTTTAAATTTTTGTTAAAAAATAAAGTATCCGAACTAAACCAAGCTTTACAGTTGAGTTCAAGTCAACTGTATTTTTTCAGCCGAGTTACAGATGAAACAATTCTTCGAAATTTGGATTTTCCCCTCGTTTTTGATTTTCTCAGATTTCAAAGATTTATTTTTCATGTTTTGGTCTCTTTGACACTCAATATTCTGAAACTCGGCTGAAAAAACTCCAATCGACCTAGAATCAGATGGAATTCATTTTTAGATTTTGAATTTTATTTTAACACAAAAATAAGGTTTTGATTAATCTACAAAAATGTTGGTTTTTTATCTAAACTTTAGACCCCAAATGTCGAAAAACCTGAAATTTTCCGAGTTCTAGCTTGTCTTCAAAAATAAAAGCAAACATTTTGAGTGTTTTGTCCATTATTTCCAATTGCATTCCAATTATCCCAGTCAAACTTCATCTGATAGTGATTTTTCAAATTTCCAAGCTTGATATGTAATTGATATGTTTTAAACTCGGAGGTTGGCTTGTGATATATG</canonical>
            <polymorphic>ATTTTACTATTCAATTCCAGATGTTACTCCATATCTCTCTTCTTCTCATTCTTCCATCTGACACGCTCGCACTGGTTGATTGTTTGGCTGGATTTGTTGGAAGGATGCAGGTCAGTCTTGGATCCTATCATTTTTCTAATCATGTTTGATGAAACCATATCTCATTGTAGATCTAGAGAAATGCAATCCTATTTTTCATGTTCTAATAGCCCCACTGGGAAAGCACGAAAAGAAAGCAGAAAGAAGGAAAGCAGGAGAGATTTTGCGGGTTATGGGTGTGTTCCGAAATTTGAAAAGAGAGAGAAATTCGAATCGTTTACAACATAAAAATATCAAAATAAGATTTTAAAAATCATTTTTCAATCAGGATTATGATATTAAAACATAGAGTTATCCCAAAGACAGTTCTGGTCAATCCCTATTTTCAGAAGCCAGTTTTAGACCCAAGGTAAAAATTGTTTTTCAGAACTTTAAATTTTTGTTAAAAAATAAAGTATCCRAACTAAACCAAGCTTTACAGTTGAGTTCAAGTCAACTGTATTTTTTCAGCCGAGTTACAGATGAAACAATTCTTCGAAATTTGGATTTTCCCCTCGTTTTTGATTTTCTCAGATTTCAAAGATTTATTTTTCATGTTTTGGTCTCTTTGACACTCAATATTCTGAAACTCGGCTGAAAAAACTCCAATCGACCTAGAATCAGATGGAATTCATTTTTAGATTTTGAATTTTATTTTAACACAAAAATAAGGTTTTGATTAATCTACAAAAATGTTGGTTTTTTATCTAAACTTTAGACCCCAAATGTCGAAAAACCTGAAATTTTCCGAGTTCTAGCTTGTCTTCAAAAATAAAAGCAAACATTTTGAGTGTTTTGTCCATTATTTCCAATTGCATTCCAATTATCCCAGTCAAACTTCATCTGATAGTGATTTTTCAAATTTCCAAGCTTGATATGTAATTGATATGTTTTAAACTCGGAGGTTGGCTTGTGATATATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>225 143 126 112 96 59 56 52 38 38 34 21</canonical_bands>
                <polymorphic_bands>225 146 143 126 96 59 56 52 38 38 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTTTCAGAAGCCAGTTTTAGA</pcr_primer_p1>
		<pcr_primer_p2>AGTTTCAGAATATTGAGTGTCAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATTTTCAGAAGCCAGTTTTAGACCCAAGGTAAAAATTGTTTTTCAGAACTTTAAATTTTTGTTAAAAAATAAAGTATCCGAACTAAACCAAGCTTTACAGTTGAGTTCAAGTCAACTGTATTTTTTCAGCCGAGTTACAGATGAAACAATTCTTCGAAATTTGGATTTTCCCCTCGTTTTTGATTTTCTCAGATTTCAAAGATTTATTTTTCATGTTTTGGTCTCTTTGACACTCAATATTCTGAAACT</canonical_amplicon>
		<polymorphic_amplicon>TATTTTCAGAAGCCAGTTTTAGACCCAAGGTAAAAATTGTTTTTCAGAACTTTAAATTTTTGTTAAAAAATAAAGTATCCRAACTAAACCAAGCTTTACAGTTGAGTTCAAGTCAACTGTATTTTTTCAGCCGAGTTACAGATGAAACAATTCTTCGAAATTTGGATTTTCCCCTCGTTTTTGATTTTCTCAGATTTCAAAGATTTATTTTTCATGTTTTGGTCTCTTTGACACTCAATATTCTGAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37626</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>399141</contig_pos>
        <strand>+</strand>
        <context>CCATGAGCCG[G/T]AATCGAATAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTTATACTACATCTTCAGAGTCTTGAATTTTCGTCAAATCCATGAGCCG</left_flank>
        <right_flank>AATCGAATATTTGTGGTCTCCGGAAACAACGGGTTACCACCACATGCTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATACCTTCTGAAAATTCTTTGAAATTGAAATTCTTCGAAAATTTATTCTACTGATTCTATGTACTGATTCTACTTATCCACTGTTCATTTTTCTCTTTCTTTTTCTGTTTTTAAAAAAATTCAAGCATAAAAAAGTTTGAGGTATGTGTTGTTCCACTAATTTTAATCTGTCACTCAGCCAGCATTCACGCCTTCTTCTCTTTTTTTCGCATAAATAGAAAGAATAACATACAAAAGAAAAATAGTTCCACTGAAAAATAAAGAATTCATAAGAATCAAGTGATTGATGAGTCGAGAATCTTTCTTTGGAATGCTCCCTCGCCATTTCCGCAGACTCCGAATGAATTATCTTTTTCTAACAAGTGCACGTCTTCAGCAGTGATAATTATAAATATAAGGAGGAAGTGTGTATGCATAATTGATTCAAGCACTTCTTCTTCTTCCTCTTCTTATACTACATCTTCAGAGTCTTGAATTTTCGTCAAATCCATGAGCCGTAATCGAATATTTGTGGTCTCCGGAAACAACGGGTTACCACCACATGCTTTTATCAATTTTCGCTGATTTGGTTTTCCGAAAAAAAAAACTAGAGATCCATGAAAACTAGAGGCTTAGGTGGTGAAAAAACGCTTTGGAGGAGAAAAGGGTTGAAAGTTGAAAATATCAGTTTATGTAGCTGAGATTAAGTAGAACAAGATCAGAAGTGGATACTGGAGTTTCAGGAGGTGAGAGTTTCAGAAGGATAGATCATATAACTAAAATTGATGGAAACTTTATCAAAAAAAATACTCGAACTTTTAGATCCTACGGACCAACAAAACAATCTGAACGAAATGGAGCCAAAAAGAGAAAAAAAAAGATCAAATAGAGTATTATTATTATTTTGAGCCTTCTACCTTTCTCCATAAAAAGTTGGCTTGGTGTGAGGATATAAAGCAGAAGGTGGGGAAAACTCGACCGGGGAAAAAACGGAATAAAAATGAAAAAAATAAAAATGC</canonical>
            <polymorphic>AAATACCTTCTGAAAATTCTTTGAAATTGAAATTCTTCGAAAATTTATTCTACTGATTCTATGTACTGATTCTACTTATCCACTGTTCATTTTTCTCTTTCTTTTTCTGTTTTTAAAAAAATTCAAGCATAAAAAAGTTTGAGGTATGTGTTGTTCCACTAATTTTAATCTGTCACTCAGCCAGCATTCACGCCTTCTTCTCTTTTTTTCGCATAAATAGAAAGAATAACATACAAAAGAAAAATAGTTCCACTGAAAAATAAAGAATTCATAAGAATCAAGTGATTGATGAGTCGAGAATCTTTCTTTGGAATGCTCCCTCGCCATTTCCGCAGACTCCGAATGAATTATCTTTTTCTAACAAGTGCACGTCTTCAGCAGTGATAATTATAAATATAAGGAGGAAGTGTGTATGCATAATTGATTCAAGCACTTCTTCTTCTTCCTCTTCTTATACTACATCTTCAGAGTCTTGAATTTTCGTCAAATCCATGAGCCGKAATCGAATATTTGTGGTCTCCGGAAACAACGGGTTACCACCACATGCTTTTATCAATTTTCGCTGATTTGGTTTTCCGAAAAAAAAAACTAGAGATCCATGAAAACTAGAGGCTTAGGTGGTGAAAAAACGCTTTGGAGGAGAAAAGGGTTGAAAGTTGAAAATATCAGTTTATGTAGCTGAGATTAAGTAGAACAAGATCAGAAGTGGATACTGGAGTTTCAGGAGGTGAGAGTTTCAGAAGGATAGATCATATAACTAAAATTGATGGAAACTTTATCAAAAAAAATACTCGAACTTTTAGATCCTACGGACCAACAAAACAATCTGAACGAAATGGAGCCAAAAAGAGAAAAAAAAAGATCAAATAGAGTATTATTATTATTTTGAGCCTTCTACCTTTCTCCATAAAAAGTTGGCTTGGTGTGAGGATATAAAGCAGAAGGTGGGGAAAACTCGACCGGGGAAAAAACGGAATAAAAATGAAAAAAATAAAAATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATTGATTCAAGCACTTCTTCT</pcr_primer_p1>
		<pcr_primer_p2>TATTTTCAACTTTCAACCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TAATTGATTCAAGCACTTCTTCTTCTTCCTCTTCTTATACTACATCTTCAGAGTCTTGAATTTTCGTCAAATCCATGAGCCGTAATCGAATATTTGTGGTCTCCGGAAACAACGGGTTACCACCACATGCTTTTATCAATTTTCGCTGATTTGGTTTTCCGAAAAAAAAAACTAGAGATCCATGAAAACTAGAGGCTTAGGTGGTGAAAAAACGCTTTGGAGGAGAAAAGGGTTGAAAGTTGAAAATA</canonical_amplicon>
		<polymorphic_amplicon>TAATTGATTCAAGCACTTCTTCTTCTTCCTCTTCTTATACTACATCTTCAGAGTCTTGAATTTTCGTCAAATCCATGAGCCGKAATCGAATATTTGTGGTCTCCGGAAACAACGGGTTACCACCACATGCTTTTATCAATTTTCGCTGATTTGGTTTTCCGAAAAAAAAAACTAGAGATCCATGAAAACTAGAGGCTTAGGTGGTGAAAAAACGCTTTGGAGGAGAAAAGGGTTGAAAGTTGAAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37627</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>413150</contig_pos>
        <strand>+</strand>
        <context>GAAGGAACCT[G/T]AGTTTTGAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGGTAGTTGTATAGTTTATGGGAATCTTTGAAAGTTCCAGAAGGAACCT</left_flank>
        <right_flank>AGTTTTGAATAAAGAATTGAATTCAGAAATTTAGAAATTCAAGTTAGAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCGGATTAAGAAACTTAAGAGCCATTCAGGGACCACTATCCAAAAGAATTGAATGTGTTCAATGATGTCAATCTTTATGGGACACCCTTCTAGATGATCCGGAATGGTGGATCATGAGTGGGATGTAGCAAAGGCACGAACGACTGATTTGCATAGGCAAACAAGAAAAATGGTGGAGAATGACGGATACGGTTTGGAGGAACAAACAAAACACCTTGTCACGGCTTTCCGATTCTTTTTCTTTCGAATCATTTTTGTGTGGACGATGGGTGGTCGAAAGAGAGAATTTCTTGAAGGAGCAAAGTCATAATTCCAGTGGCCTGGTGTCGTTTTATGACTTGTTTTAATACACAACCCAGCTGCCAACAAGAATTCGAACAAATCTGAACTATGTTTTTGAAAACAATGTACACTTCATTTTAAATTCTGAAAATTTTAGGAATAGTATTGGTAGTTGTATAGTTTATGGGAATCTTTGAAAGTTCCAGAAGGAACCTTAGTTTTGAATAAAGAATTGAATTCAGAAATTTAGAAATTCAAGTTAGAAATTTTTAAAAAATTCAAGAATTCAGTAATTCAGAAGTTTGGATATTTTGAAAATTTACAAAATTCAGAACATTTGAAAAACCACAAATTCCGAAAATTCAAAAATCCCGAAATTCGGAAAATCAGAAATTCAAAAAATTTGGAACAACACAAAAATGTTTCTTTAAAAAACTTTATTATATTTGAAGTTTTTAAAAGATCCGAAGACATTTTGATATGGATAAAATGACTGTGGGACATGCTCTCCAATATTTAAAAAATACGCTCTACGGATAATCTTTCTTATATATAAAACGCTACACGCGTCTGTTCCCGATGTCATTCTGTCCGTTTTTGAAAAGCTTAAGAATAAATATAAATTGACGTGACTCTTTAAGAAAATGAGGATCGGGTTAACAAATCAGTGAAAACCCTAGGTTAAATCGCGCCGAAGGCGCACCCGCTTGCTGGTA</canonical>
            <polymorphic>TGTCGGATTAAGAAACTTAAGAGCCATTCAGGGACCACTATCCAAAAGAATTGAATGTGTTCAATGATGTCAATCTTTATGGGACACCCTTCTAGATGATCCGGAATGGTGGATCATGAGTGGGATGTAGCAAAGGCACGAACGACTGATTTGCATAGGCAAACAAGAAAAATGGTGGAGAATGACGGATACGGTTTGGAGGAACAAACAAAACACCTTGTCACGGCTTTCCGATTCTTTTTCTTTCGAATCATTTTTGTGTGGACGATGGGTGGTCGAAAGAGAGAATTTCTTGAAGGAGCAAAGTCATAATTCCAGTGGCCTGGTGTCGTTTTATGACTTGTTTTAATACACAACCCAGCTGCCAACAAGAATTCGAACAAATCTGAACTATGTTTTTGAAAACAATGTACACTTCATTTTAAATTCTGAAAATTTTAGGAATAGTATTGGTAGTTGTATAGTTTATGGGAATCTTTGAAAGTTCCAGAAGGAACCTKAGTTTTGAATAAAGAATTGAATTCAGAAATTTAGAAATTCAAGTTAGAAATTTTTAAAAAATTCAAGAATTCAGTAATTCAGAAGTTTGGATATTTTGAAAATTTACAAAATTCAGAACATTTGAAAAACCACAAATTCCGAAAATTCAAAAATCCCGAAATTCGGAAAATCAGAAATTCAAAAAATTTGGAACAACACAAAAATGTTTCTTTAAAAAACTTTATTATATTTGAAGTTTTTAAAAGATCCGAAGACATTTTGATATGGATAAAATGACTGTGGGACATGCTCTCCAATATTTAAAAAATACGCTCTACGGATAATCTTTCTTATATATAAAACGCTACACGCGTCTGTTCCCGATGTCATTCTGTCCGTTTTTGAAAAGCTTAAGAATAAATATAAATTGACGTGACTCTTTAAGAAAATGAGGATCGGGTTAACAAATCAGTGAAAACCCTAGGTTAAATCGCGCCGAAGGCGCACCCGCTTGCTGGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGAAAACAATGTACACTTCA</pcr_primer_p1>
		<pcr_primer_p2>AATTTGTGGTTTTTCAAATGTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTTGAAAACAATGTACACTTCATTTTAAATTCTGAAAATTTTAGGAATAGTATTGGTAGTTGTATAGTTTATGGGAATCTTTGAAAGTTCCAGAAGGAACCTTAGTTTTGAATAAAGAATTGAATTCAGAAATTTAGAAATTCAAGTTAGAAATTTTTAAAAAATTCAAGAATTCAGTAATTCAGAAGTTTGGATATTTTGAAAATTTACAAAATTCAGAACATTTGAAAAACCACAAATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGAAAACAATGTACACTTCATTTTAAATTCTGAAAATTTTAGGAATAGTATTGGTAGTTGTATAGTTTATGGGAATCTTTGAAAGTTCCAGAAGGAACCTKAGTTTTGAATAAAGAATTGAATTCAGAAATTTAGAAATTCAAGTTAGAAATTTTTAAAAAATTCAAGAATTCAGTAATTCAGAAGTTTGGATATTTTGAAAATTTACAAAATTCAGAACATTTGAAAAACCACAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37628</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>413358</contig_pos>
        <strand></strand>
        <context>ACAAAAATGT[T/C]TCTTTAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAAATTCGGAAAATCAGAAATTCAAAAAATTTGGAACAACACAAAAATGT</left_flank>
        <right_flank>TCTTTAAAAAACTTTATTATATTTGAAGTTTTTAAAAGATCCGAAGACAT</right_flank>
        <qual_score>49</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAACACCTTGTCACGGCTTTCCGATTCTTTTTCTTTCGAATCATTTTTGTGTGGACGATGGGTGGTCGAAAGAGAGAATTTCTTGAAGGAGCAAAGTCATAATTCCAGTGGCCTGGTGTCGTTTTATGACTTGTTTTAATACACAACCCAGCTGCCAACAAGAATTCGAACAAATCTGAACTATGTTTTTGAAAACAATGTACACTTCATTTTAAATTCTGAAAATTTTAGGAATAGTATTGGTAGTTGTATAGTTTATGGGAATCTTTGAAAGTTCCAGAAGGAACCTTAGTTTTGAATAAAGAATTGAATTCAGAAATTTAGAAATTCAAGTTAGAAATTTTTAAAAAATTCAAGAATTCAGTAATTCAGAAGTTTGGATATTTTGAAAATTTACAAAATTCAGAACATTTGAAAAACCACAAATTCCGAAAATTCAAAAATCCCGAAATTCGGAAAATCAGAAATTCAAAAAATTTGGAACAACACAAAAATGTTTCTTTAAAAAACTTTATTATATTTGAAGTTTTTAAAAGATCCGAAGACATTTTGATATGGATAAAATGACTGTGGGACATGCTCTCCAATATTTAAAAAATACGCTCTACGGATAATCTTTCTTATATATAAAACGCTACACGCGTCTGTTCCCGATGTCATTCTGTCCGTTTTTGAAAAGCTTAAGAATAAATATAAATTGACGTGACTCTTTAAGAAAATGAGGATCGGGTTAACAAATCAGTGAAAACCCTAGGTTAAATCGCGCCGAAGGCGCACCCGCTTGCTGGTAAATAATACAAGTGCACCAGAAAAAAATTAAATTTCCATCAGTTAGCCTACTGTCAGTCTTAAAGGACAATCATTCAAAAGAAACAATGATCTCTATAGATCCTTATAAGGAATTCGATGAAAAAATGGCACATCCACAAAAAACAAAAAAGACATGGTGGCCTTGAAATGAAACAATGCATTTGTGTCATCCAGAGAAACGAAGAAGA</canonical>
            <polymorphic>CAAAACACCTTGTCACGGCTTTCCGATTCTTTTTCTTTCGAATCATTTTTGTGTGGACGATGGGTGGTCGAAAGAGAGAATTTCTTGAAGGAGCAAAGTCATAATTCCAGTGGCCTGGTGTCGTTTTATGACTTGTTTTAATACACAACCCAGCTGCCAACAAGAATTCGAACAAATCTGAACTATGTTTTTGAAAACAATGTACACTTCATTTTAAATTCTGAAAATTTTAGGAATAGTATTGGTAGTTGTATAGTTTATGGGAATCTTTGAAAGTTCCAGAAGGAACCTTAGTTTTGAATAAAGAATTGAATTCAGAAATTTAGAAATTCAAGTTAGAAATTTTTAAAAAATTCAAGAATTCAGTAATTCAGAAGTTTGGATATTTTGAAAATTTACAAAATTCAGAACATTTGAAAAACCACAAATTCCGAAAATTCAAAAATCCCGAAATTCGGAAAATCAGAAATTCAAAAAATTTGGAACAACACAAAAATGTYTCTTTAAAAAACTTTATTATATTTGAAGTTTTTAAAAGATCCGAAGACATTTTGATATGGATAAAATGACTGTGGGACATGCTCTCCAATATTTAAAAAATACGCTCTACGGATAATCTTTCTTATATATAAAACGCTACACGCGTCTGTTCCCGATGTCATTCTGTCCGTTTTTGAAAAGCTTAAGAATAAATATAAATTGACGTGACTCTTTAAGAAAATGAGGATCGGGTTAACAAATCAGTGAAAACCCTAGGTTAAATCGCGCCGAAGGCGCACCCGCTTGCTGGTAAATAATACAAGTGCACCAGAAAAAAATTAAATTTCCATCAGTTAGCCTACTGTCAGTCTTAAAGGACAATCATTCAAAAGAAACAATGATCTCTATAGATCCTTATAAGGAATTCGATGAAAAAATGGCACATCCACAAAAAACAAAAAAGACATGGTGGCCTTGAAATGAAACAATGCATTTGTGTCATCCAGAGAAACGAAGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTCAAGAATTCAGTAATTCAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTAAATATTGGAGAGCATGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATTCAAGAATTCAGTAATTCAGAAGTTTGGATATTTTGAAAATTTACAAAATTCAGAACATTTGAAAAACCACAAATTCCGAAAATTCAAAAATCCCGAAATTCGGAAAATCAGAAATTCAAAAAATTTGGAACAACACAAAAATGTTTCTTTAAAAAACTTTATTATATTTGAAGTTTTTAAAAGATCCGAAGACATTTTGATATGGATAAAATGACTGTGGGACATGCTCTCCAATATTTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAATTCAAGAATTCAGTAATTCAGAAGTTTGGATATTTTGAAAATTTACAAAATTCAGAACATTTGAAAAACCACAAATTCCGAAAATTCAAAAATCCCGAAATTCGGAAAATCAGAAATTCAAAAAATTTGGAACAACACAAAAATGTYTCTTTAAAAAACTTTATTATATTTGAAGTTTTTAAAAGATCCGAAGACATTTTGATATGGATAAAATGACTGTGGGACATGCTCTCCAATATTTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37629</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>413537</contig_pos>
        <strand></strand>
        <context>cgtttttgaa[A/T]agcttaagaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATAAAACGCTACACGCGTCTGTTCCCGATGTCATTCTGTCCGTTTTTGAA</left_flank>
        <right_flank>AGCTTAAGAATAAATATAAATTGACGTGACTCTTTAAGAAAATGAGGATC</right_flank>
        <qual_score>47</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACTATGTTTTTGAAAACAATGTACACTTCATTTTAAATTCTGAAAATTTTAGGAATAGTATTGGTAGTTGTATAGTTTATGGGAATCTTTGAAAGTTCCAGAAGGAACCTTAGTTTTGAATAAAGAATTGAATTCAGAAATTTAGAAATTCAAGTTAGAAATTTTTAAAAAATTCAAGAATTCAGTAATTCAGAAGTTTGGATATTTTGAAAATTTACAAAATTCAGAACATTTGAAAAACCACAAATTCCGAAAATTCAAAAATCCCGAAATTCGGAAAATCAGAAATTCAAAAAATTTGGAACAACACAAAAATGTTTCTTTAAAAAACTTTATTATATTTGAAGTTTTTAAAAGATCCGAAGACATTTTGATATGGATAAAATGACTGTGGGACATGCTCTCCAATATTTAAAAAATACGCTCTACGGATAATCTTTCTTATATATAAAACGCTACACGCGTCTGTTCCCGATGTCATTCTGTCCGTTTTTGAAAAGCTTAAGAATAAATATAAATTGACGTGACTCTTTAAGAAAATGAGGATCGGGTTAACAAATCAGTGAAAACCCTAGGTTAAATCGCGCCGAAGGCGCACCCGCTTGCTGGTAAATAATACAAGTGCACCAGAAAAAAATTAAATTTCCATCAGTTAGCCTACTGTCAGTCTTAAAGGACAATCATTCAAAAGAAACAATGATCTCTATAGATCCTTATAAGGAATTCGATGAAAAAATGGCACATCCACAAAAAACAAAAAAGACATGGTGGCCTTGAAATGAAACAATGCATTTGTGTCATCCAGAGAAACGAAGAAGAGGTTTATGCTCTTTGGCTCCACCACACGAAACACATCAAAAAGGGTTAGCCGCTGAAATATGGAAATAAGGAATGTGACATTTGTGGGAAGAAGAAGAAGGAGGGGCAAGAAGGAAGAAAACGAGAGGAAAAGCAATGGCGGTTTGGGTTTGGGCATGGTAGAAGACTTCATTGAAATG</canonical>
            <polymorphic>GAACTATGTTTTTGAAAACAATGTACACTTCATTTTAAATTCTGAAAATTTTAGGAATAGTATTGGTAGTTGTATAGTTTATGGGAATCTTTGAAAGTTCCAGAAGGAACCTTAGTTTTGAATAAAGAATTGAATTCAGAAATTTAGAAATTCAAGTTAGAAATTTTTAAAAAATTCAAGAATTCAGTAATTCAGAAGTTTGGATATTTTGAAAATTTACAAAATTCAGAACATTTGAAAAACCACAAATTCCGAAAATTCAAAAATCCCGAAATTCGGAAAATCAGAAATTCAAAAAATTTGGAACAACACAAAAATGTTTCTTTAAAAAACTTTATTATATTTGAAGTTTTTAAAAGATCCGAAGACATTTTGATATGGATAAAATGACTGTGGGACATGCTCTCCAATATTTAAAAAATACGCTCTACGGATAATCTTTCTTATATATAAAACGCTACACGCGTCTGTTCCCGATGTCATTCTGTCCGTTTTTGAAWAGCTTAAGAATAAATATAAATTGACGTGACTCTTTAAGAAAATGAGGATCGGGTTAACAAATCAGTGAAAACCCTAGGTTAAATCGCGCCGAAGGCGCACCCGCTTGCTGGTAAATAATACAAGTGCACCAGAAAAAAATTAAATTTCCATCAGTTAGCCTACTGTCAGTCTTAAAGGACAATCATTCAAAAGAAACAATGATCTCTATAGATCCTTATAAGGAATTCGATGAAAAAATGGCACATCCACAAAAAACAAAAAAGACATGGTGGCCTTGAAATGAAACAATGCATTTGTGTCATCCAGAGAAACGAAGAAGAGGTTTATGCTCTTTGGCTCCACCACACGAAACACATCAAAAAGGGTTAGCCGCTGAAATATGGAAATAAGGAATGTGACATTTGTGGGAAGAAGAAGAAGGAGGGGCAAGAAGGAAGAAAACGAGAGGAAAAGCAATGGCGGTTTGGGTTTGGGCATGGTAGAAGACTTCATTGAAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGACATGCTCTCCAATATTTA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTGGTGCACTTGTATTAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GGACATGCTCTCCAATATTTAAAAAATACGCTCTACGGATAATCTTTCTTATATATAAAACGCTACACGCGTCTGTTCCCGATGTCATTCTGTCCGTTTTTGAAAAGCTTAAGAATAAATATAAATTGACGTGACTCTTTAAGAAAATGAGGATCGGGTTAACAAATCAGTGAAAACCCTAGGTTAAATCGCGCCGAAGGCGCACCCGCTTGCTGGTAAATAATACAAGTGCACCAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGACATGCTCTCCAATATTTAAAAAATACGCTCTACGGATAATCTTTCTTATATATAAAACGCTACACGCGTCTGTTCCCGATGTCATTCTGTCCGTTTTTGAAWAGCTTAAGAATAAATATAAATTGACGTGACTCTTTAAGAAAATGAGGATCGGGTTAACAAATCAGTGAAAACCCTAGGTTAAATCGCGCCGAAGGCGCACCCGCTTGCTGGTAAATAATACAAGTGCACCAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37630</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>450212</contig_pos>
        <strand>+</strand>
        <context>TATTTTAAAA[A/T]AGACTCACTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAGAAGAATTGCTGAAGTTGTATGAAAGTTGGAAATTGATATTTTAAAA</left_flank>
        <right_flank>AGACTCACTGATTCACCATGTTGTTCACTAACTGGAGGAAGAAGGTTCGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCAGTTGATACAAATCTCTGCTTCATTTTTTCGATTGTCTTCAGAAGAGGCTCCATAAACACTCCGAAAGGTGGATCAGTGATGAGAAGAACGCTCTTGCTGTTTTGGAAGAATTCCATTAGCTTTGGTTCTGCATTTTTGTCGAAGAAATGATCTACGAGCATACTGTACTGAGCGTATTGCTTCGAGGGGAAGAATTTTGCCTGGAACATTTTTATAAAAAATTAAGTTGAATAAAACAACAAAACTTACAAATCTCTTATCATAATCTAACAAGAAGACATTCTTTTCTGGGTGGCGGGCACGGATATTTTCGAAAATCTGAAAACAAAAACGTAGTAAAGCTGCTAATTCTGTTCCACTTACTCTTGGAGCTCCGATACAGAGGATTCCGTCCACTTTGGACTTCTCCACAGCTTTGACAATCACCCCAAGGGTTTCCTCAGAAAAGAAGAATTGCTGAAGTTGTATGAAAGTTGGAAATTGATATTTTAAAATAGACTCACTGATTCACCATGTTGTTCACTAACTGGAGGAAGAAGGTTCGTTGGTTTGGCAAGTGTTTCTTTCTCAACTGGTTCACATACACATTCATGCTTGTTTGCGAACACATTGATACAATCCTTGCAGTAGAGAACTGTGTCGGTTGGCTTCATTTCAGTGAGACTAAAACAACGAAAATTCGAAGATTATGGAAAATTGAAACTAACGCTTTTGGAATACGATTGTATCCGAATATTTTCTTCTTCTTCTCAGAATCTTCTCCCTCCTTCACTTCAATTTCCCCGGTTTCCTTGTTGTACTGCAGTTTAAAATCACAGAATTCGTCCTGGTTTCTGTAAATCGCACAAGAGAAAAATGTTTCCTCGACTTCTGGTCCATTCTTCTTTTCAAACAAAAGACATGGGCCATGTGAACATTCAGGTACACTTGGCAGATCATCTGTCGGGAGCACTTGGAAGAATCCACGTTGTCTCAATGCAGTGCTGTCCTGTTTG</canonical>
            <polymorphic>TTCCAGTTGATACAAATCTCTGCTTCATTTTTTCGATTGTCTTCAGAAGAGGCTCCATAAACACTCCGAAAGGTGGATCAGTGATGAGAAGAACGCTCTTGCTGTTTTGGAAGAATTCCATTAGCTTTGGTTCTGCATTTTTGTCGAAGAAATGATCTACGAGCATACTGTACTGAGCGTATTGCTTCGAGGGGAAGAATTTTGCCTGGAACATTTTTATAAAAAATTAAGTTGAATAAAACAACAAAACTTACAAATCTCTTATCATAATCTAACAAGAAGACATTCTTTTCTGGGTGGCGGGCACGGATATTTTCGAAAATCTGAAAACAAAAACGTAGTAAAGCTGCTAATTCTGTTCCACTTACTCTTGGAGCTCCGATACAGAGGATTCCGTCCACTTTGGACTTCTCCACAGCTTTGACAATCACCCCAAGGGTTTCCTCAGAAAAGAAGAATTGCTGAAGTTGTATGAAAGTTGGAAATTGATATTTTAAAAWAGACTCACTGATTCACCATGTTGTTCACTAACTGGAGGAAGAAGGTTCGTTGGTTTGGCAAGTGTTTCTTTCTCAACTGGTTCACATACACATTCATGCTTGTTTGCGAACACATTGATACAATCCTTGCAGTAGAGAACTGTGTCGGTTGGCTTCATTTCAGTGAGACTAAAACAACGAAAATTCGAAGATTATGGAAAATTGAAACTAACGCTTTTGGAATACGATTGTATCCGAATATTTTCTTCTTCTTCTCAGAATCTTCTCCCTCCTTCACTTCAATTTCCCCGGTTTCCTTGTTGTACTGCAGTTTAAAATCACAGAATTCGTCCTGGTTTCTGTAAATCGCACAAGAGAAAAATGTTTCCTCGACTTCTGGTCCATTCTTCTTTTCAAACAAAAGACATGGGCCATGTGAACATTCAGGTACACTTGGCAGATCATCTGTCGGGAGCACTTGGAAGAATCCACGTTGTCTCAATGCAGTGCTGTCCTGTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGTAGTAAAGCTGCTAATTCTG</pcr_primer_p1>
		<pcr_primer_p2>GTGAACCAGTTGAGAAAGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACGTAGTAAAGCTGCTAATTCTGTTCCACTTACTCTTGGAGCTCCGATACAGAGGATTCCGTCCACTTTGGACTTCTCCACAGCTTTGACAATCACCCCAAGGGTTTCCTCAGAAAAGAAGAATTGCTGAAGTTGTATGAAAGTTGGAAATTGATATTTTAAAATAGACTCACTGATTCACCATGTTGTTCACTAACTGGAGGAAGAAGGTTCGTTGGTTTGGCAAGTGTTTCTTTCTCAACTGGTTCAC</canonical_amplicon>
		<polymorphic_amplicon>ACGTAGTAAAGCTGCTAATTCTGTTCCACTTACTCTTGGAGCTCCGATACAGAGGATTCCGTCCACTTTGGACTTCTCCACAGCTTTGACAATCACCCCAAGGGTTTCCTCAGAAAAGAAGAATTGCTGAAGTTGTATGAAAGTTGGAAATTGATATTTTAAAAWAGACTCACTGATTCACCATGTTGTTCACTAACTGGAGGAAGAAGGTTCGTTGGTTTGGCAAGTGTTTCTTTCTCAACTGGTTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37631</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>452202</contig_pos>
        <strand>+</strand>
        <context>TTCAAACTCA[A/T]TCCAAATAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAAGTTATTCATGAGATCAAAACTTTATTTTATTTTGCTTTCAAACTCA</left_flank>
        <right_flank>TCCAAATAGCATATTTTTTATTGGGGTTATGCATGATTTGTTTTTTAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>NNNNNCAATTTTCAGTTTAAAAAATACTGTGATTTTTAGCATTTTTTTTTCCAATTTTCTGCCCAAAAATCCCAAAAAATTCAAATTTCCCTCCAAATCCCCTTTCCCCTATAAAAATCCTCTTCCAGAGCATCGACGGCGGTTGGATGGAAGGTCGAAACGCTCGTGGATCGGTGGGGCTCTTCCCAGAAGCGTACGTCACTCCGTACCAAGCACAACGAGCCGGAGCCCAGCCTCCACCGGTAATTCATTTTCAGCAGAATCGAAATCGAAAAAAGAGACAAAATCCAATCCAATTCCTTCTTGTTTTCTTGTTTTTCCATCCCGGCTTTCTCGTCTAAATTGAGTCCGGCGAAATGATTGAAAAATTGAAATTCCATTCTCTCGCTCTCTGTCTGCGTCTCTCCTCCTCGACATTTGCGGGGTCTCTTGAACCCAAGTGAGCTTAATGAAGTTATTCATGAGATCAAAACTTTATTTTATTTTGCTTTCAAACTCATTCCAAATAGCATATTTTTTATTGGGGTTATGCATGATTTGTTTTTTAATTACAGAAAAATACGAAAAAATACATGAAATAAATTTTTCCGCATGCATGCATTCATTTTTTGTGTTTAAAAAATACAGAAACACATTTTTTATGTCATGAATAACCCCATATGCCATTGGCTATTTTTTCATATAGCCGAAAATTAGCAATTCTGGAAAAAAGCATACCAATGAATATGGAGAGTGAGAGCGACAGTCAGAACTGCATCCATGACTGGTCCGTGGATGAAGTAGGATGCTGGGAGAATTGGGAGCATTCCGACGGCCCAGAGACGTTCGAGCTAGAATTTTTGATGGTTATCATTTTCAGAACAGAGGAAAAAAATCTACCTTGAAATGCATCGAGTGGTCCGGAACTTTGCTGGCTCCATCATTCAAGGTTGAAGTGGCACGAACGATTGTAGAAAGTCGTGGGGCTGTTTTAGCTACGAGGAGAGCCTTTTGGAAGTGA</canonical>
            <polymorphic>NNNNNCAATTTTCAGTTTAAAAAATACTGTGATTTTTAGCATTTTTTTTTCCAATTTTCTGCCCAAAAATCCCAAAAAATTCAAATTTCCCTCCAAATCCCCTTTCCCCTATAAAAATCCTCTTCCAGAGCATCGACGGCGGTTGGATGGAAGGTCGAAACGCTCGTGGATCGGTGGGGCTCTTCCCAGAAGCGTACGTCACTCCGTACCAAGCACAACGAGCCGGAGCCCAGCCTCCACCGGTAATTCATTTTCAGCAGAATCGAAATCGAAAAAAGAGACAAAATCCAATCCAATTCCTTCTTGTTTTCTTGTTTTTCCATCCCGGCTTTCTCGTCTAAATTGAGTCCGGCGAAATGATTGAAAAATTGAAATTCCATTCTCTCGCTCTCTGTCTGCGTCTCTCCTCCTCGACATTTGCGGGGTCTCTTGAACCCAAGTGAGCTTAATGAAGTTATTCATGAGATCAAAACTTTATTTTATTTTGCTTTCAAACTCAWTCCAAATAGCATATTTTTTATTGGGGTTATGCATGATTTGTTTTTTAATTACAGAAAAATACGAAAAAATACATGAAATAAATTTTTCCGCATGCATGCATTCATTTTTTGTGTTTAAAAAATACAGAAACACATTTTTTATGTCATGAATAACCCCATATGCCATTGGCTATTTTTTCATATAGCCGAAAATTAGCAATTCTGGAAAAAAGCATACCAATGAATATGGAGAGTGAGAGCGACAGTCAGAACTGCATCCATGACTGGTCCGTGGATGAAGTAGGATGCTGGGAGAATTGGGAGCATTCCGACGGCCCAGAGACGTTCGAGCTAGAATTTTTGATGGTTATCATTTTCAGAACAGAGGAAAAAAATCTACCTTGAAATGCATCGAGTGGTCCGGAACTTTGCTGGCTCCATCATTCAAGGTTGAAGTGGCACGAACGATTGTAGAAAGTCGTGGGGCTGTTTTAGCTACGAGGAGAGCCTTTTGGAAGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAGTGAGCTTAATGAAGTTAT</pcr_primer_p1>
		<pcr_primer_p2>TGCTAATTTTCGGCTATATGA</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>CCAAGTGAGCTTAATGAAGTTATTCATGAGATCAAAACTTTATTTTATTTTGCTTTCAAACTCATTCCAAATAGCATATTTTTTATTGGGGTTATGCATGATTTGTTTTTTAATTACAGAAAAATACGAAAAAATACATGAAATAAATTTTTCCGCATGCATGCATTCATTTTTTGTGTTTAAAAAATACAGAAACACATTTTTTATGTCATGAATAACCCCATATGCCATTGGCTATTTTTTCATATAGCCGAAAATTAGCA</canonical_amplicon>
		<polymorphic_amplicon>CCAAGTGAGCTTAATGAAGTTATTCATGAGATCAAAACTTTATTTTATTTTGCTTTCAAACTCAWTCCAAATAGCATATTTTTTATTGGGGTTATGCATGATTTGTTTTTTAATTACAGAAAAATACGAAAAAATACATGAAATAAATTTTTCCGCATGCATGCATTCATTTTTTGTGTTTAAAAAATACAGAAACACATTTTTTATGTCATGAATAACCCCATATGCCATTGGCTATTTTTTCATATAGCCGAAAATTAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37632</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>472097</contig_pos>
        <strand>+</strand>
        <context>GATATCTGCA[A/G]TACAGGGTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAAAGGAGTTGAAGAACTGCTCCCAAGTTACCACTGTCGATATCTGCA</left_flank>
        <right_flank>TACAGGGTATCAATGAATGGAAGAATAGCTAGCGAGAGAGGCATGTTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTATGGAAATTAGCGGAATTGGAGAAATGGTTAGACCCAGTTCTAATAATTTTTTGCGGAGAATATCAACTTGGTCCCACATATTTTTAAAGTTTTAAACTTTTTTGTAAAACTATAATACTCTATATGTAGAGCTCTGATTTTGTTTGCCCTGGTTTTTTATTTTTCCTGTAAATTGGGTAAACATTAATCACTTTCCAAGACACTGGAACTAACTGAATGATTTCTTTTTTTAGAATGCCAACTGTATTTCGAATGAATATACGAAATATGTAAGCTAGGATATCCAAAATTAATCACTTCGATGTTCAAACATTTCTTTATTAAAAAACTCACTTGGATACCGCTGGTGGCATGATGGCTGTCGTTGTTGTTGTTACCGGGAGCTGTTCCAACTTTTTCTGATCCTTTTTCAGTTGCCGAAGCTTCTGTTTGTAAGAGGAAAGAAGAAAAAGGAGTTGAAGAACTGCTCCCAAGTTACCACTGTCGATATCTGCAGTACAGGGTATCAATGAATGGAAGAATAGCTAGCGAGAGAGGCATGTTTTTGGAACGAAGTGAAAGCCAATTGAGGCAGACCAAAAAAGGGCTCTATTCTGAATGGGCAAACGATGTGTGTATGTTTGTATATGTGTTCTTCCAAAAAAAAGTATTGCCTTCTCCTCAAAACTGAATTGAGTTTTTTGTCCACCTCCTCTTTTCCCGAAATCGTTTAGTTTCGTACAGTCCTTTAGGAGAAAAACGATCCGACATGTGGGTAAGAAGAGCGAATAGAGATAGTAAAGTGTGGGAATATTTAGAGAACTTGTGTTAGAAACATGACATCTTCTAAAGTTTTCGGTCTAATCTCATAGATCCTCACAACGGCTATGCAAAATAAGATTTTTCAAAAACTTAACAGTTTGAAGTTAAGGGCCATATTTGAACAAAAGTCTTATTTTCCCTTCTGGATGTTTTGGTATCATTAGACTGCTCTATAGACAATTTAGGAGCCGTTCA</canonical>
            <polymorphic>ATTATGGAAATTAGCGGAATTGGAGAAATGGTTAGACCCAGTTCTAATAATTTTTTGCGGAGAATATCAACTTGGTCCCACATATTTTTAAAGTTTTAAACTTTTTTGTAAAACTATAATACTCTATATGTAGAGCTCTGATTTTGTTTGCCCTGGTTTTTTATTTTTCCTGTAAATTGGGTAAACATTAATCACTTTCCAAGACACTGGAACTAACTGAATGATTTCTTTTTTTAGAATGCCAACTGTATTTCGAATGAATATACGAAATATGTAAGCTAGGATATCCAAAATTAATCACTTCGATGTTCAAACATTTCTTTATTAAAAAACTCACTTGGATACCGCTGGTGGCATGATGGCTGTCGTTGTTGTTGTTACCGGGAGCTGTTCCAACTTTTTCTGATCCTTTTTCAGTTGCCGAAGCTTCTGTTTGTAAGAGGAAAGAAGAAAAAGGAGTTGAAGAACTGCTCCCAAGTTACCACTGTCGATATCTGCARTACAGGGTATCAATGAATGGAAGAATAGCTAGCGAGAGAGGCATGTTTTTGGAACGAAGTGAAAGCCAATTGAGGCAGACCAAAAAAGGGCTCTATTCTGAATGGGCAAACGATGTGTGTATGTTTGTATATGTGTTCTTCCAAAAAAAAGTATTGCCTTCTCCTCAAAACTGAATTGAGTTTTTTGTCCACCTCCTCTTTTCCCGAAATCGTTTAGTTTCGTACAGTCCTTTAGGAGAAAAACGATCCGACATGTGGGTAAGAAGAGCGAATAGAGATAGTAAAGTGTGGGAATATTTAGAGAACTTGTGTTAGAAACATGACATCTTCTAAAGTTTTCGGTCTAATCTCATAGATCCTCACAACGGCTATGCAAAATAAGATTTTTCAAAAACTTAACAGTTTGAAGTTAAGGGCCATATTTGAACAAAAGTCTTATTTTCCCTTCTGGATGTTTTGGTATCATTAGACTGCTCTATAGACAATTTAGGAGCCGTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 277 222</canonical_bands>
                <polymorphic_bands>723 277</polymorphic_bands>
            </assay>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>495 481 24</canonical_bands>
                <polymorphic_bands>976 24</polymorphic_bands>
            </assay>
            <assay>
                <site>CTGCAG</site>
                <isoschizomers>
                    <enzyme>BloHII</enzyme>
                    <enzyme>BstMAI</enzyme>
                    <enzyme>PstI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTTTTCTGATCCTTTTTCAGT</pcr_primer_p1>
		<pcr_primer_p2>TTGGAAGAACACATATACAAACA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTTTTTCTGATCCTTTTTCAGTTGCCGAAGCTTCTGTTTGTAAGAGGAAAGAAGAAAAAGGAGTTGAAGAACTGCTCCCAAGTTACCACTGTCGATATCTGCAGTACAGGGTATCAATGAATGGAAGAATAGCTAGCGAGAGAGGCATGTTTTTGGAACGAAGTGAAAGCCAATTGAGGCAGACCAAAAAAGGGCTCTATTCTGAATGGGCAAACGATGTGTGTATGTTTGTATATGTGTTCTTCCAA</canonical_amplicon>
		<polymorphic_amplicon>ACTTTTTCTGATCCTTTTTCAGTTGCCGAAGCTTCTGTTTGTAAGAGGAAAGAAGAAAAAGGAGTTGAAGAACTGCTCCCAAGTTACCACTGTCGATATCTGCARTACAGGGTATCAATGAATGGAAGAATAGCTAGCGAGAGAGGCATGTTTTTGGAACGAAGTGAAAGCCAATTGAGGCAGACCAAAAAAGGGCTCTATTCTGAATGGGCAAACGATGTGTGTATGTTTGTATATGTGTTCTTCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37633</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>473838</contig_pos>
        <strand></strand>
        <context>tttgatattt[C/T]tcacagaaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTATGATATCAGCAACATTTGATTAGTTAACCACTTTTTGATATTT</left_flank>
        <right_flank>TCACAGAAAATGAGATAAATAAGCTGAAACTTAAGGATTCGGGTAGCGTT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGAACGGATGGGGAAGGTGAATTTGAATTTGAATTGAGAGTGCTTAAAACGAGAAAGGGGTACTGTAGCTCTATTGAAGTTAGAATAAAAACGGTAAATAGAAAAAACTTATCAAAATGTCCTGTTTACAGCTTTGGAGTGCATATTCGAAACGCATAATTGTGTGAATCAAAGATAGTAAATTTTGAATTCCAATTCAAAGTTTTTGGAAAAATATGAAAAAAACCGACGGTACTAAAAATCAAACTGTGAACACTCTAATAGCCCCAAACCGTCATCTTTGTGCCTATTTATTTCGGTTCTTGTAAAAGATATCAAAAAGTGGTCAACTAGCAAAATATTGTGCATATCGTGAACACTCTAATAGAACGCCACCCGGATCGTCTACTTTGAGCCTATATATCTTCCTTCTTTTGAAAGATATCAAAAAGTTGTCAACTAATAAAATTTTTTATGATATCAGCAACATTTGATTAGTTAACCACTTTTTGATATTTCTCACAGAAAATGAGATAAATAAGCTGAAACTTAAGGATTCGGGTAGCGTTCTATTAGAGTGTTAACAGTATTTTAATAAACATTTCATTAGTTGAATACGTTTTGATATATTTTTCAGCAATCGAGATATATGGGCTCAAAGTTGGAAATTGAGGTAGGACTCTATTCGAGTGATAAAAATGTATAACTTCGATATTCCATTAATTCAAATCTCACTGAATTGAAGCCAATTTGTCAATTTACTTTTTCAAAAACTTTAGACCTTACAAAATTAAAAAAAAAACAACAATATAATTGTCTTATCTCCTGGTTTAGAATCACAAATGACCTAACTAGTATATCAAGCCAGAGATGTACACACGCGACGGTAATAAAATTACTAGAGAAACAGTAATAACAATTGAGAGAAGTCCTTCGTCTTTCCCATCACTATATCACGAAAAGGAGATTATTATCAGTTGATCTTCCCTCCATTCGAAGGTTGCCTTTCCGAGAGGAGT</canonical>
            <polymorphic>AATGAACGGATGGGGAAGGTGAATTTGAATTTGAATTGAGAGTGCTTAAAACGAGAAAGGGGTACTGTAGCTCTATTGAAGTTAGAATAAAAACGGTAAATAGAAAAAACTTATCAAAATGTCCTGTTTACAGCTTTGGAGTGCATATTCGAAACGCATAATTGTGTGAATCAAAGATAGTAAATTTTGAATTCCAATTCAAAGTTTTTGGAAAAATATGAAAAAAACCGACGGTACTAAAAATCAAACTGTGAACACTCTAATAGCCCCAAACCGTCATCTTTGTGCCTATTTATTTCGGTTCTTGTAAAAGATATCAAAAAGTGGTCAACTAGCAAAATATTGTGCATATCGTGAACACTCTAATAGAACGCCACCCGGATCGTCTACTTTGAGCCTATATATCTTCCTTCTTTTGAAAGATATCAAAAAGTTGTCAACTAATAAAATTTTTTATGATATCAGCAACATTTGATTAGTTAACCACTTTTTGATATTTYTCACAGAAAATGAGATAAATAAGCTGAAACTTAAGGATTCGGGTAGCGTTCTATTAGAGTGTTAACAGTATTTTAATAAACATTTCATTAGTTGAATACGTTTTGATATATTTTTCAGCAATCGAGATATATGGGCTCAAAGTTGGAAATTGAGGTAGGACTCTATTCGAGTGATAAAAATGTATAACTTCGATATTCCATTAATTCAAATCTCACTGAATTGAAGCCAATTTGTCAATTTACTTTTTCAAAAACTTTAGACCTTACAAAATTAAAAAAAAAACAACAATATAATTGTCTTATCTCCTGGTTTAGAATCACAAATGACCTAACTAGTATATCAAGCCAGAGATGTACACACGCGACGGTAATAAAATTACTAGAGAAACAGTAATAACAATTGAGAGAAGTCCTTCGTCTTTCCCATCACTATATCACGAAAAGGAGATTATTATCAGTTGATCTTCCCTCCATTCGAAGGTTGCCTTTCCGAGAGGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAACTGTGAACACTCTAATAGC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTATCACTCGAATAGAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>TCAAACTGTGAACACTCTAATAGCCCCAAACCGTCATCTTTGTGCCTATTTATTTCGGTTCTTGTAAAAGATATCAAAAAGTGGTCAACTAGCAAAATATTGTGCATATCGTGAACACTCTAATAGAACGCCACCCGGATCGTCTACTTTGAGCCTATATATCTTCCTTCTTTTGAAAGATATCAAAAAGTTGTCAACTAATAAAATTTTTTATGATATCAGCAACATTTGATTAGTTAACCACTTTTTGATATTTCTCACAGAAAATGAGATAAATAAGCTGAAACTTAAGGATTCGGGTAGCGTTCTATTAGAGTGTTAACAGTATTTTAATAAACATTTCATTAGTTGAATACGTTTTGATATATTTTTCAGCAATCGAGATATATGGGCTCAAAGTTGGAAATTGAGGTAGGACTCTATTCGAGTGATAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCAAACTGTGAACACTCTAATAGCCCCAAACCGTCATCTTTGTGCCTATTTATTTCGGTTCTTGTAAAAGATATCAAAAAGTGGTCAACTAGCAAAATATTGTGCATATCGTGAACACTCTAATAGAACGCCACCCGGATCGTCTACTTTGAGCCTATATATCTTCCTTCTTTTGAAAGATATCAAAAAGTTGTCAACTAATAAAATTTTTTATGATATCAGCAACATTTGATTAGTTAACCACTTTTTGATATTTYTCACAGAAAATGAGATAAATAAGCTGAAACTTAAGGATTCGGGTAGCGTTCTATTAGAGTGTTAACAGTATTTTAATAAACATTTCATTAGTTGAATACGTTTTGATATATTTTTCAGCAATCGAGATATATGGGCTCAAAGTTGGAAATTGAGGTAGGACTCTATTCGAGTGATAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37634</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>473883</contig_pos>
        <strand></strand>
        <context>ggattcgggt[A/G]gcgttctatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTTCTCACAGAAAATGAGATAAATAAGCTGAAACTTAAGGATTCGGGT</left_flank>
        <right_flank>GCGTTCTATTAGAGTGTTAACAGTATTTTAATAAACATTTCATTAGTTGA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAACGAGAAAGGGGTACTGTAGCTCTATTGAAGTTAGAATAAAAACGGTAAATAGAAAAAACTTATCAAAATGTCCTGTTTACAGCTTTGGAGTGCATATTCGAAACGCATAATTGTGTGAATCAAAGATAGTAAATTTTGAATTCCAATTCAAAGTTTTTGGAAAAATATGAAAAAAACCGACGGTACTAAAAATCAAACTGTGAACACTCTAATAGCCCCAAACCGTCATCTTTGTGCCTATTTATTTCGGTTCTTGTAAAAGATATCAAAAAGTGGTCAACTAGCAAAATATTGTGCATATCGTGAACACTCTAATAGAACGCCACCCGGATCGTCTACTTTGAGCCTATATATCTTCCTTCTTTTGAAAGATATCAAAAAGTTGTCAACTAATAAAATTTTTTATGATATCAGCAACATTTGATTAGTTAACCACTTTTTGATATTTCTCACAGAAAATGAGATAAATAAGCTGAAACTTAAGGATTCGGGTAGCGTTCTATTAGAGTGTTAACAGTATTTTAATAAACATTTCATTAGTTGAATACGTTTTGATATATTTTTCAGCAATCGAGATATATGGGCTCAAAGTTGGAAATTGAGGTAGGACTCTATTCGAGTGATAAAAATGTATAACTTCGATATTCCATTAATTCAAATCTCACTGAATTGAAGCCAATTTGTCAATTTACTTTTTCAAAAACTTTAGACCTTACAAAATTAAAAAAAAAACAACAATATAATTGTCTTATCTCCTGGTTTAGAATCACAAATGACCTAACTAGTATATCAAGCCAGAGATGTACACACGCGACGGTAATAAAATTACTAGAGAAACAGTAATAACAATTGAGAGAAGTCCTTCGTCTTTCCCATCACTATATCACGAAAAGGAGATTATTATCAGTTGATCTTCCCTCCATTCGAAGGTTGCCTTTCCGAGAGGAGTTACGGAAAACCAAAAGCGATTGCGCGAAAAAAGTTGAGAGGTTGG</canonical>
            <polymorphic>TTAAAACGAGAAAGGGGTACTGTAGCTCTATTGAAGTTAGAATAAAAACGGTAAATAGAAAAAACTTATCAAAATGTCCTGTTTACAGCTTTGGAGTGCATATTCGAAACGCATAATTGTGTGAATCAAAGATAGTAAATTTTGAATTCCAATTCAAAGTTTTTGGAAAAATATGAAAAAAACCGACGGTACTAAAAATCAAACTGTGAACACTCTAATAGCCCCAAACCGTCATCTTTGTGCCTATTTATTTCGGTTCTTGTAAAAGATATCAAAAAGTGGTCAACTAGCAAAATATTGTGCATATCGTGAACACTCTAATAGAACGCCACCCGGATCGTCTACTTTGAGCCTATATATCTTCCTTCTTTTGAAAGATATCAAAAAGTTGTCAACTAATAAAATTTTTTATGATATCAGCAACATTTGATTAGTTAACCACTTTTTGATATTTCTCACAGAAAATGAGATAAATAAGCTGAAACTTAAGGATTCGGGTRGCGTTCTATTAGAGTGTTAACAGTATTTTAATAAACATTTCATTAGTTGAATACGTTTTGATATATTTTTCAGCAATCGAGATATATGGGCTCAAAGTTGGAAATTGAGGTAGGACTCTATTCGAGTGATAAAAATGTATAACTTCGATATTCCATTAATTCAAATCTCACTGAATTGAAGCCAATTTGTCAATTTACTTTTTCAAAAACTTTAGACCTTACAAAATTAAAAAAAAAACAACAATATAATTGTCTTATCTCCTGGTTTAGAATCACAAATGACCTAACTAGTATATCAAGCCAGAGATGTACACACGCGACGGTAATAAAATTACTAGAGAAACAGTAATAACAATTGAGAGAAGTCCTTCGTCTTTCCCATCACTATATCACGAAAAGGAGATTATTATCAGTTGATCTTCCCTCCATTCGAAGGTTGCCTTTCCGAGAGGAGTTACGGAAAACCAAAAGCGATTGCGCGAAAAAAGTTGAGAGGTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAACTGTGAACACTCTAATAGC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTATCACTCGAATAGAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>TCAAACTGTGAACACTCTAATAGCCCCAAACCGTCATCTTTGTGCCTATTTATTTCGGTTCTTGTAAAAGATATCAAAAAGTGGTCAACTAGCAAAATATTGTGCATATCGTGAACACTCTAATAGAACGCCACCCGGATCGTCTACTTTGAGCCTATATATCTTCCTTCTTTTGAAAGATATCAAAAAGTTGTCAACTAATAAAATTTTTTATGATATCAGCAACATTTGATTAGTTAACCACTTTTTGATATTTCTCACAGAAAATGAGATAAATAAGCTGAAACTTAAGGATTCGGGTAGCGTTCTATTAGAGTGTTAACAGTATTTTAATAAACATTTCATTAGTTGAATACGTTTTGATATATTTTTCAGCAATCGAGATATATGGGCTCAAAGTTGGAAATTGAGGTAGGACTCTATTCGAGTGATAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCAAACTGTGAACACTCTAATAGCCCCAAACCGTCATCTTTGTGCCTATTTATTTCGGTTCTTGTAAAAGATATCAAAAAGTGGTCAACTAGCAAAATATTGTGCATATCGTGAACACTCTAATAGAACGCCACCCGGATCGTCTACTTTGAGCCTATATATCTTCCTTCTTTTGAAAGATATCAAAAAGTTGTCAACTAATAAAATTTTTTATGATATCAGCAACATTTGATTAGTTAACCACTTTTTGATATTTCTCACAGAAAATGAGATAAATAAGCTGAAACTTAAGGATTCGGGTRGCGTTCTATTAGAGTGTTAACAGTATTTTAATAAACATTTCATTAGTTGAATACGTTTTGATATATTTTTCAGCAATCGAGATATATGGGCTCAAAGTTGGAAATTGAGGTAGGACTCTATTCGAGTGATAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37635</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>473960</contig_pos>
        <strand></strand>
        <context>ttttcagcaa[T/C]cgagatatat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTAATAAACATTTCATTAGTTGAATACGTTTTGATATATTTTTCAGCAA</left_flank>
        <right_flank>CGAGATATATGGGCTCAAAGTTGGAAATTGAGGTAGGACTCTATTCGAGT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTGTTTACAGCTTTGGAGTGCATATTCGAAACGCATAATTGTGTGAATCAAAGATAGTAAATTTTGAATTCCAATTCAAAGTTTTTGGAAAAATATGAAAAAAACCGACGGTACTAAAAATCAAACTGTGAACACTCTAATAGCCCCAAACCGTCATCTTTGTGCCTATTTATTTCGGTTCTTGTAAAAGATATCAAAAAGTGGTCAACTAGCAAAATATTGTGCATATCGTGAACACTCTAATAGAACGCCACCCGGATCGTCTACTTTGAGCCTATATATCTTCCTTCTTTTGAAAGATATCAAAAAGTTGTCAACTAATAAAATTTTTTATGATATCAGCAACATTTGATTAGTTAACCACTTTTTGATATTTCTCACAGAAAATGAGATAAATAAGCTGAAACTTAAGGATTCGGGTAGCGTTCTATTAGAGTGTTAACAGTATTTTAATAAACATTTCATTAGTTGAATACGTTTTGATATATTTTTCAGCAATCGAGATATATGGGCTCAAAGTTGGAAATTGAGGTAGGACTCTATTCGAGTGATAAAAATGTATAACTTCGATATTCCATTAATTCAAATCTCACTGAATTGAAGCCAATTTGTCAATTTACTTTTTCAAAAACTTTAGACCTTACAAAATTAAAAAAAAAACAACAATATAATTGTCTTATCTCCTGGTTTAGAATCACAAATGACCTAACTAGTATATCAAGCCAGAGATGTACACACGCGACGGTAATAAAATTACTAGAGAAACAGTAATAACAATTGAGAGAAGTCCTTCGTCTTTCCCATCACTATATCACGAAAAGGAGATTATTATCAGTTGATCTTCCCTCCATTCGAAGGTTGCCTTTCCGAGAGGAGTTACGGAAAACCAAAAGCGATTGCGCGAAAAAAGTTGAGAGGTTGGAAAAAAGATGAAACGAGACAAACCGAAAAGTAATTACCCAGAATAGGAAGCGGTTGTCGCGGCGCCCGACCTCAAAA</canonical>
            <polymorphic>CCTGTTTACAGCTTTGGAGTGCATATTCGAAACGCATAATTGTGTGAATCAAAGATAGTAAATTTTGAATTCCAATTCAAAGTTTTTGGAAAAATATGAAAAAAACCGACGGTACTAAAAATCAAACTGTGAACACTCTAATAGCCCCAAACCGTCATCTTTGTGCCTATTTATTTCGGTTCTTGTAAAAGATATCAAAAAGTGGTCAACTAGCAAAATATTGTGCATATCGTGAACACTCTAATAGAACGCCACCCGGATCGTCTACTTTGAGCCTATATATCTTCCTTCTTTTGAAAGATATCAAAAAGTTGTCAACTAATAAAATTTTTTATGATATCAGCAACATTTGATTAGTTAACCACTTTTTGATATTTCTCACAGAAAATGAGATAAATAAGCTGAAACTTAAGGATTCGGGTAGCGTTCTATTAGAGTGTTAACAGTATTTTAATAAACATTTCATTAGTTGAATACGTTTTGATATATTTTTCAGCAAYCGAGATATATGGGCTCAAAGTTGGAAATTGAGGTAGGACTCTATTCGAGTGATAAAAATGTATAACTTCGATATTCCATTAATTCAAATCTCACTGAATTGAAGCCAATTTGTCAATTTACTTTTTCAAAAACTTTAGACCTTACAAAATTAAAAAAAAAACAACAATATAATTGTCTTATCTCCTGGTTTAGAATCACAAATGACCTAACTAGTATATCAAGCCAGAGATGTACACACGCGACGGTAATAAAATTACTAGAGAAACAGTAATAACAATTGAGAGAAGTCCTTCGTCTTTCCCATCACTATATCACGAAAAGGAGATTATTATCAGTTGATCTTCCCTCCATTCGAAGGTTGCCTTTCCGAGAGGAGTTACGGAAAACCAAAAGCGATTGCGCGAAAAAAGTTGAGAGGTTGGAAAAAAGATGAAACGAGACAAACCGAAAAGTAATTACCCAGAATAGGAAGCGGTTGTCGCGGCGCCCGACCTCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>473 285 146 45 28 23</canonical_bands>
                <polymorphic_bands>518 285 146 28 23</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>313 270 231 186</canonical_bands>
                <polymorphic_bands>583 231 186</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAACTGTGAACACTCTAATAGC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTATCACTCGAATAGAGTCC</pcr_primer_p2>
		<pcr_amplicon_size>437</pcr_amplicon_size>
		<canonical_amplicon>TCAAACTGTGAACACTCTAATAGCCCCAAACCGTCATCTTTGTGCCTATTTATTTCGGTTCTTGTAAAAGATATCAAAAAGTGGTCAACTAGCAAAATATTGTGCATATCGTGAACACTCTAATAGAACGCCACCCGGATCGTCTACTTTGAGCCTATATATCTTCCTTCTTTTGAAAGATATCAAAAAGTTGTCAACTAATAAAATTTTTTATGATATCAGCAACATTTGATTAGTTAACCACTTTTTGATATTTCTCACAGAAAATGAGATAAATAAGCTGAAACTTAAGGATTCGGGTAGCGTTCTATTAGAGTGTTAACAGTATTTTAATAAACATTTCATTAGTTGAATACGTTTTGATATATTTTTCAGCAATCGAGATATATGGGCTCAAAGTTGGAAATTGAGGTAGGACTCTATTCGAGTGATAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCAAACTGTGAACACTCTAATAGCCCCAAACCGTCATCTTTGTGCCTATTTATTTCGGTTCTTGTAAAAGATATCAAAAAGTGGTCAACTAGCAAAATATTGTGCATATCGTGAACACTCTAATAGAACGCCACCCGGATCGTCTACTTTGAGCCTATATATCTTCCTTCTTTTGAAAGATATCAAAAAGTTGTCAACTAATAAAATTTTTTATGATATCAGCAACATTTGATTAGTTAACCACTTTTTGATATTTCTCACAGAAAATGAGATAAATAAGCTGAAACTTAAGGATTCGGGTAGCGTTCTATTAGAGTGTTAACAGTATTTTAATAAACATTTCATTAGTTGAATACGTTTTGATATATTTTTCAGCAAYCGAGATATATGGGCTCAAAGTTGGAAATTGAGGTAGGACTCTATTCGAGTGATAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37636</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>473987</contig_pos>
        <strand></strand>
        <context>aaagttggaa[A/G]ttgaggTAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTTTTGATATATTTTTCAGCAATCGAGATATATGGGCTCAAAGTTGGAA</left_flank>
        <right_flank>TTGAGGTAGGACTCTATTCGAGTGATAAAAATGTATAACTTCGATATTCC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAAACGCATAATTGTGTGAATCAAAGATAGTAAATTTTGAATTCCAATTCAAAGTTTTTGGAAAAATATGAAAAAAACCGACGGTACTAAAAATCAAACTGTGAACACTCTAATAGCCCCAAACCGTCATCTTTGTGCCTATTTATTTCGGTTCTTGTAAAAGATATCAAAAAGTGGTCAACTAGCAAAATATTGTGCATATCGTGAACACTCTAATAGAACGCCACCCGGATCGTCTACTTTGAGCCTATATATCTTCCTTCTTTTGAAAGATATCAAAAAGTTGTCAACTAATAAAATTTTTTATGATATCAGCAACATTTGATTAGTTAACCACTTTTTGATATTTCTCACAGAAAATGAGATAAATAAGCTGAAACTTAAGGATTCGGGTAGCGTTCTATTAGAGTGTTAACAGTATTTTAATAAACATTTCATTAGTTGAATACGTTTTGATATATTTTTCAGCAATCGAGATATATGGGCTCAAAGTTGGAAATTGAGGTAGGACTCTATTCGAGTGATAAAAATGTATAACTTCGATATTCCATTAATTCAAATCTCACTGAATTGAAGCCAATTTGTCAATTTACTTTTTCAAAAACTTTAGACCTTACAAAATTAAAAAAAAAACAACAATATAATTGTCTTATCTCCTGGTTTAGAATCACAAATGACCTAACTAGTATATCAAGCCAGAGATGTACACACGCGACGGTAATAAAATTACTAGAGAAACAGTAATAACAATTGAGAGAAGTCCTTCGTCTTTCCCATCACTATATCACGAAAAGGAGATTATTATCAGTTGATCTTCCCTCCATTCGAAGGTTGCCTTTCCGAGAGGAGTTACGGAAAACCAAAAGCGATTGCGCGAAAAAAGTTGAGAGGTTGGAAAAAAGATGAAACGAGACAAACCGAAAAGTAATTACCCAGAATAGGAAGCGGTTGTCGCGGCGCCCGACCTCAAAATCAAGATGAGGCAAGATAAGGATCTTT</canonical>
            <polymorphic>CGAAACGCATAATTGTGTGAATCAAAGATAGTAAATTTTGAATTCCAATTCAAAGTTTTTGGAAAAATATGAAAAAAACCGACGGTACTAAAAATCAAACTGTGAACACTCTAATAGCCCCAAACCGTCATCTTTGTGCCTATTTATTTCGGTTCTTGTAAAAGATATCAAAAAGTGGTCAACTAGCAAAATATTGTGCATATCGTGAACACTCTAATAGAACGCCACCCGGATCGTCTACTTTGAGCCTATATATCTTCCTTCTTTTGAAAGATATCAAAAAGTTGTCAACTAATAAAATTTTTTATGATATCAGCAACATTTGATTAGTTAACCACTTTTTGATATTTCTCACAGAAAATGAGATAAATAAGCTGAAACTTAAGGATTCGGGTAGCGTTCTATTAGAGTGTTAACAGTATTTTAATAAACATTTCATTAGTTGAATACGTTTTGATATATTTTTCAGCAATCGAGATATATGGGCTCAAAGTTGGAARTTGAGGTAGGACTCTATTCGAGTGATAAAAATGTATAACTTCGATATTCCATTAATTCAAATCTCACTGAATTGAAGCCAATTTGTCAATTTACTTTTTCAAAAACTTTAGACCTTACAAAATTAAAAAAAAAACAACAATATAATTGTCTTATCTCCTGGTTTAGAATCACAAATGACCTAACTAGTATATCAAGCCAGAGATGTACACACGCGACGGTAATAAAATTACTAGAGAAACAGTAATAACAATTGAGAGAAGTCCTTCGTCTTTCCCATCACTATATCACGAAAAGGAGATTATTATCAGTTGATCTTCCCTCCATTCGAAGGTTGCCTTTCCGAGAGGAGTTACGGAAAACCAAAAGCGATTGCGCGAAAAAAGTTGAGAGGTTGGAAAAAAGATGAAACGAGACAAACCGAAAAGTAATTACCCAGAATAGGAAGCGGTTGTCGCGGCGCCCGACCTCAAAATCAAGATGAGGCAAGATAAGGATCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>252 200 178 82 73 55 33 24 23 23 16 10 10 8 7 6</canonical_bands>
                <polymorphic_bands>255 252 178 82 73 33 24 23 23 16 10 10 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAACTGTGAACACTCTAATAGC</pcr_primer_p1>
		<pcr_primer_p2>TTGAATTAATGGAATATCGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>466</pcr_amplicon_size>
		<canonical_amplicon>TCAAACTGTGAACACTCTAATAGCCCCAAACCGTCATCTTTGTGCCTATTTATTTCGGTTCTTGTAAAAGATATCAAAAAGTGGTCAACTAGCAAAATATTGTGCATATCGTGAACACTCTAATAGAACGCCACCCGGATCGTCTACTTTGAGCCTATATATCTTCCTTCTTTTGAAAGATATCAAAAAGTTGTCAACTAATAAAATTTTTTATGATATCAGCAACATTTGATTAGTTAACCACTTTTTGATATTTCTCACAGAAAATGAGATAAATAAGCTGAAACTTAAGGATTCGGGTAGCGTTCTATTAGAGTGTTAACAGTATTTTAATAAACATTTCATTAGTTGAATACGTTTTGATATATTTTTCAGCAATCGAGATATATGGGCTCAAAGTTGGAAATTGAGGTAGGACTCTATTCGAGTGATAAAAATGTATAACTTCGATATTCCATTAATTCAA</canonical_amplicon>
		<polymorphic_amplicon>TCAAACTGTGAACACTCTAATAGCCCCAAACCGTCATCTTTGTGCCTATTTATTTCGGTTCTTGTAAAAGATATCAAAAAGTGGTCAACTAGCAAAATATTGTGCATATCGTGAACACTCTAATAGAACGCCACCCGGATCGTCTACTTTGAGCCTATATATCTTCCTTCTTTTGAAAGATATCAAAAAGTTGTCAACTAATAAAATTTTTTATGATATCAGCAACATTTGATTAGTTAACCACTTTTTGATATTTCTCACAGAAAATGAGATAAATAAGCTGAAACTTAAGGATTCGGGTAGCGTTCTATTAGAGTGTTAACAGTATTTTAATAAACATTTCATTAGTTGAATACGTTTTGATATATTTTTCAGCAATCGAGATATATGGGCTCAAAGTTGGAARTTGAGGTAGGACTCTATTCGAGTGATAAAAATGTATAACTTCGATATTCCATTAATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37637</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>474112</contig_pos>
        <strand>+</strand>
        <context>TTACAAAATT[A/T]AAAAAAAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGCCAATTTGTCAATTTACTTTTTCAAAAACTTTAGACCTTACAAAATT</left_flank>
        <right_flank>AAAAAAAAACAACAATATAATTGTCTTATCTCCTGGTTTAGAATCACAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTCATCTTTGTGCCTATTTATTTCGGTTCTTGTAAAAGATATCAAAAAGTGGTCAACTAGCAAAATATTGTGCATATCGTGAACACTCTAATAGAACGCCACCCGGATCGTCTACTTTGAGCCTATATATCTTCCTTCTTTTGAAAGATATCAAAAAGTTGTCAACTAATAAAATTTTTTATGATATCAGCAACATTTGATTAGTTAACCACTTTTTGATATTTCTCACAGAAAATGAGATAAATAAGCTGAAACTTAAGGATTCGGGTAGCGTTCTATTAGAGTGTTAACAGTATTTTAATAAACATTTCATTAGTTGAATACGTTTTGATATATTTTTCAGCAATCGAGATATATGGGCTCAAAGTTGGAAATTGAGGTAGGACTCTATTCGAGTGATAAAAATGTATAACTTCGATATTCCATTAATTCAAATCTCACTGAATTGAAGCCAATTTGTCAATTTACTTTTTCAAAAACTTTAGACCTTACAAAATTAAAAAAAAAACAACAATATAATTGTCTTATCTCCTGGTTTAGAATCACAAATGACCTAACTAGTATATCAAGCCAGAGATGTACACACGCGACGGTAATAAAATTACTAGAGAAACAGTAATAACAATTGAGAGAAGTCCTTCGTCTTTCCCATCACTATATCACGAAAAGGAGATTATTATCAGTTGATCTTCCCTCCATTCGAAGGTTGCCTTTCCGAGAGGAGTTACGGAAAACCAAAAGCGATTGCGCGAAAAAAGTTGAGAGGTTGGAAAAAAGATGAAACGAGACAAACCGAAAAGTAATTACCCAGAATAGGAAGCGGTTGTCGCGGCGCCCGACCTCAAAATCAAGATGAGGCAAGATAAGGATCTTTCAGAATTCCGACGGTTACACAGTCCCTCCTTCTTCAGAGTTAACCTCGATTCAATAGAAAAAGAGAGAGCGATGGGATTATATGAAACAGCCGGCTGTCGATTGACAAACACCTGCTGGAGGGCT</canonical>
            <polymorphic>CGTCATCTTTGTGCCTATTTATTTCGGTTCTTGTAAAAGATATCAAAAAGTGGTCAACTAGCAAAATATTGTGCATATCGTGAACACTCTAATAGAACGCCACCCGGATCGTCTACTTTGAGCCTATATATCTTCCTTCTTTTGAAAGATATCAAAAAGTTGTCAACTAATAAAATTTTTTATGATATCAGCAACATTTGATTAGTTAACCACTTTTTGATATTTCTCACAGAAAATGAGATAAATAAGCTGAAACTTAAGGATTCGGGTAGCGTTCTATTAGAGTGTTAACAGTATTTTAATAAACATTTCATTAGTTGAATACGTTTTGATATATTTTTCAGCAATCGAGATATATGGGCTCAAAGTTGGAAATTGAGGTAGGACTCTATTCGAGTGATAAAAATGTATAACTTCGATATTCCATTAATTCAAATCTCACTGAATTGAAGCCAATTTGTCAATTTACTTTTTCAAAAACTTTAGACCTTACAAAATTWAAAAAAAAACAACAATATAATTGTCTTATCTCCTGGTTTAGAATCACAAATGACCTAACTAGTATATCAAGCCAGAGATGTACACACGCGACGGTAATAAAATTACTAGAGAAACAGTAATAACAATTGAGAGAAGTCCTTCGTCTTTCCCATCACTATATCACGAAAAGGAGATTATTATCAGTTGATCTTCCCTCCATTCGAAGGTTGCCTTTCCGAGAGGAGTTACGGAAAACCAAAAGCGATTGCGCGAAAAAAGTTGAGAGGTTGGAAAAAAGATGAAACGAGACAAACCGAAAAGTAATTACCCAGAATAGGAAGCGGTTGTCGCGGCGCCCGACCTCAAAATCAAGATGAGGCAAGATAAGGATCTTTCAGAATTCCGACGGTTACACAGTCCCTCCTTCTTCAGAGTTAACCTCGATTCAATAGAAAAAGAGAGAGCGATGGGATTATATGAAACAGCCGGCTGTCGATTGACAAACACCTGCTGGAGGGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>417 206 128 85 71 51 31 11</canonical_bands>
                <polymorphic_bands>488 206 128 85 51 31 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCATTAATTCAAATCTCACTG</pcr_primer_p1>
		<pcr_primer_p2>CTCCTTTTCGTGATATAGTGATG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTCCATTAATTCAAATCTCACTGAATTGAAGCCAATTTGTCAATTTACTTTTTCAAAAACTTTAGACCTTACAAAATTAAAAAAAAAACAACAATATAATTGTCTTATCTCCTGGTTTAGAATCACAAATGACCTAACTAGTATATCAAGCCAGAGATGTACACACGCGACGGTAATAAAATTACTAGAGAAACAGTAATAACAATTGAGAGAAGTCCTTCGTCTTTCCCATCACTATATCACGAAAAGGAG</canonical_amplicon>
		<polymorphic_amplicon>TTCCATTAATTCAAATCTCACTGAATTGAAGCCAATTTGTCAATTTACTTTTTCAAAAACTTTAGACCTTACAAAATTWAAAAAAAAACAACAATATAATTGTCTTATCTCCTGGTTTAGAATCACAAATGACCTAACTAGTATATCAAGCCAGAGATGTACACACGCGACGGTAATAAAATTACTAGAGAAACAGTAATAACAATTGAGAGAAGTCCTTCGTCTTTCCCATCACTATATCACGAAAAGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37638</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>484459</contig_pos>
        <strand>+</strand>
        <context>TCCAGAAATC[C/T]AATAACTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAATTTTCGAAATTTCCGAAATACAAAATTCCGAAAATTCCAGAAATC</left_flank>
        <right_flank>AATAACTCCAAGAATCCAAAAAATCGAAAAATTCCAAAATTTTCAAAACT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCCAGCTGCGCGGGAAAATAAGAATCAGTGGCACACACCCCAAGGCCTTGACAACACAGTTAGTTCAGAAACAGAGAATTGGAACACCCAAACCCAAATGAGCTAATTATACACTGCTTCTTCCATTCTTTCTGTCTCCACCTCGTTGTGAGCATTAACACTGGATTACGTTGGAGGAGGAAGAAGGGAATGGGACGACTCCTTCCGTTCGGATGGAAGCGGTAAACATGCGGATATGGAGAGATGTGCACTGATTTGAATTAACTGAGAATAAGAGAGGGGGCACCCTTCGAAAATAGAATGGTAATTATGTGGAGAAGAAGTGCGAATTCATAAAATTCGCGGATTTGCATTTTCAATCTTCAAGATGAGAGAGATTGATGGACTTCGAATAGTGTCAATATGAAGATTTTTAATTTTCTAAAGGAACATTAGAACCTAAAAATCCTGAAATTTTCGAAATTTCCGAAATACAAAATTCCGAAAATTCCAGAAATCTAATAACTCCAAGAATCCAAAAAATCGAAAAATTCCAAAATTTTCAAAACTTCCGAAAGTTAAAAAAAAAACTTTGAAAATCCTGAAATTTATTTCCGAAATAGAAAAAAATCTGAAATTTTCGAAAATATCCAAGTTCCAAAAATCCGAAATATTCCGAAAACTCCGAAAGTTCCAAAAAATTCAAAATTTCAAATTATCCTGAGAATTTCAAATATTCCAAAAACTTCGAAAATTAGAGAACATTTTGAAAATTTCGAAAAATCAAAAGAAAATTGAAAATTTTAAACATCCTTAAATATCCCAAAAATCCTGAAAATTTCAAAATTTCAAAAACTTCGGAGAATTTCAAATATTAAGAAAACATCGAAAACTTCAAAAAATTCCGAACTTTCAAGAATGAAAAAATTCCAAAATTTAAAATATTCCGAAAAATCTAAAAATCCAGAAAATTCAAAACAAATCCAAAAACTTTTAAAATTTTCAAAAAATTAAAAATCC</canonical>
            <polymorphic>ACCCAGCTGCGCGGGAAAATAAGAATCAGTGGCACACACCCCAAGGCCTTGACAACACAGTTAGTTCAGAAACAGAGAATTGGAACACCCAAACCCAAATGAGCTAATTATACACTGCTTCTTCCATTCTTTCTGTCTCCACCTCGTTGTGAGCATTAACACTGGATTACGTTGGAGGAGGAAGAAGGGAATGGGACGACTCCTTCCGTTCGGATGGAAGCGGTAAACATGCGGATATGGAGAGATGTGCACTGATTTGAATTAACTGAGAATAAGAGAGGGGGCACCCTTCGAAAATAGAATGGTAATTATGTGGAGAAGAAGTGCGAATTCATAAAATTCGCGGATTTGCATTTTCAATCTTCAAGATGAGAGAGATTGATGGACTTCGAATAGTGTCAATATGAAGATTTTTAATTTTCTAAAGGAACATTAGAACCTAAAAATCCTGAAATTTTCGAAATTTCCGAAATACAAAATTCCGAAAATTCCAGAAATCYAATAACTCCAAGAATCCAAAAAATCGAAAAATTCCAAAATTTTCAAAACTTCCGAAAGTTAAAAAAAAAACTTTGAAAATCCTGAAATTTATTTCCGAAATAGAAAAAAATCTGAAATTTTCGAAAATATCCAAGTTCCAAAAATCCGAAATATTCCGAAAACTCCGAAAGTTCCAAAAAATTCAAAATTTCAAATTATCCTGAGAATTTCAAATATTCCAAAAACTTCGAAAATTAGAGAACATTTTGAAAATTTCGAAAAATCAAAAGAAAATTGAAAATTTTAAACATCCTTAAATATCCCAAAAATCCTGAAAATTTCAAAATTTCAAAAACTTCGGAGAATTTCAAATATTAAGAAAACATCGAAAACTTCAAAAAATTCCGAACTTTCAAGAATGAAAAAATTCCAAAATTTAAAATATTCCGAAAAATCTAAAAATCCAGAAAATTCAAAACAAATCCAAAAACTTTTAAAATTTTCAAAAAATTAAAAATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTGCATTTTCAATCTTCA</pcr_primer_p1>
		<pcr_primer_p2>GAAATAAATTTCAGGATTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATTTGCATTTTCAATCTTCAAGATGAGAGAGATTGATGGACTTCGAATAGTGTCAATATGAAGATTTTTAATTTTCTAAAGGAACATTAGAACCTAAAAATCCTGAAATTTTCGAAATTTCCGAAATACAAAATTCCGAAAATTCCAGAAATCTAATAACTCCAAGAATCCAAAAAATCGAAAAATTCCAAAATTTTCAAAACTTCCGAAAGTTAAAAAAAAAACTTTGAAAATCCTGAAATTTATTTC</canonical_amplicon>
		<polymorphic_amplicon>GATTTGCATTTTCAATCTTCAAGATGAGAGAGATTGATGGACTTCGAATAGTGTCAATATGAAGATTTTTAATTTTCTAAAGGAACATTAGAACCTAAAAATCCTGAAATTTTCGAAATTTCCGAAATACAAAATTCCGAAAATTCCAGAAATCYAATAACTCCAAGAATCCAAAAAATCGAAAAATTCCAAAATTTTCAAAACTTCCGAAAGTTAAAAAAAAAACTTTGAAAATCCTGAAATTTATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37639</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>484622</contig_pos>
        <strand>+</strand>
        <context>ATTCCGAAAA[A/C]TCCGAAAGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGAAATTTTCGAAAATATCCAAGTTCCAAAAATCCGAAATATTCCGAAAA</left_flank>
        <right_flank>TCCGAAAGTTCCAAAAAATTCAAAATTTCAAATTATCCTGAGAATTTCAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATTACGTTGGAGGAGGAAGAAGGGAATGGGACGACTCCTTCCGTTCGGATGGAAGCGGTAAACATGCGGATATGGAGAGATGTGCACTGATTTGAATTAACTGAGAATAAGAGAGGGGGCACCCTTCGAAAATAGAATGGTAATTATGTGGAGAAGAAGTGCGAATTCATAAAATTCGCGGATTTGCATTTTCAATCTTCAAGATGAGAGAGATTGATGGACTTCGAATAGTGTCAATATGAAGATTTTTAATTTTCTAAAGGAACATTAGAACCTAAAAATCCTGAAATTTTCGAAATTTCCGAAATACAAAATTCCGAAAATTCCAGAAATCTAATAACTCCAAGAATCCAAAAAATCGAAAAATTCCAAAATTTTCAAAACTTCCGAAAGTTAAAAAAAAAACTTTGAAAATCCTGAAATTTATTTCCGAAATAGAAAAAAATCTGAAATTTTCGAAAATATCCAAGTTCCAAAAATCCGAAATATTCCGAAAACTCCGAAAGTTCCAAAAAATTCAAAATTTCAAATTATCCTGAGAATTTCAAATATTCCAAAAACTTCGAAAATTAGAGAACATTTTGAAAATTTCGAAAAATCAAAAGAAAATTGAAAATTTTAAACATCCTTAAATATCCCAAAAATCCTGAAAATTTCAAAATTTCAAAAACTTCGGAGAATTTCAAATATTAAGAAAACATCGAAAACTTCAAAAAATTCCGAACTTTCAAGAATGAAAAAATTCCAAAATTTAAAATATTCCGAAAAATCTAAAAATCCAGAAAATTCAAAACAAATCCAAAAACTTTTAAAATTTTCAAAAAATTAAAAATCCTTAAAATGCCAAAATTTTATTTTTTCCAATACTTAATTTCATGGACATATGAATTCAATAATGTTAAATTGTAATCCAAAATGCAAATTTTTTTCAAAATACGAAATAATCAGAATTTAATCTAGCTCATTGAAGATCTGATTAGGGAGTTAATTTTTTGTAG</canonical>
            <polymorphic>GGATTACGTTGGAGGAGGAAGAAGGGAATGGGACGACTCCTTCCGTTCGGATGGAAGCGGTAAACATGCGGATATGGAGAGATGTGCACTGATTTGAATTAACTGAGAATAAGAGAGGGGGCACCCTTCGAAAATAGAATGGTAATTATGTGGAGAAGAAGTGCGAATTCATAAAATTCGCGGATTTGCATTTTCAATCTTCAAGATGAGAGAGATTGATGGACTTCGAATAGTGTCAATATGAAGATTTTTAATTTTCTAAAGGAACATTAGAACCTAAAAATCCTGAAATTTTCGAAATTTCCGAAATACAAAATTCCGAAAATTCCAGAAATCTAATAACTCCAAGAATCCAAAAAATCGAAAAATTCCAAAATTTTCAAAACTTCCGAAAGTTAAAAAAAAAACTTTGAAAATCCTGAAATTTATTTCCGAAATAGAAAAAAATCTGAAATTTTCGAAAATATCCAAGTTCCAAAAATCCGAAATATTCCGAAAAMTCCGAAAGTTCCAAAAAATTCAAAATTTCAAATTATCCTGAGAATTTCAAATATTCCAAAAACTTCGAAAATTAGAGAACATTTTGAAAATTTCGAAAAATCAAAAGAAAATTGAAAATTTTAAACATCCTTAAATATCCCAAAAATCCTGAAAATTTCAAAATTTCAAAAACTTCGGAGAATTTCAAATATTAAGAAAACATCGAAAACTTCAAAAAATTCCGAACTTTCAAGAATGAAAAAATTCCAAAATTTAAAATATTCCGAAAAATCTAAAAATCCAGAAAATTCAAAACAAATCCAAAAACTTTTAAAATTTTCAAAAAATTAAAAATCCTTAAAATGCCAAAATTTTATTTTTTCCAATACTTAATTTCATGGACATATGAATTCAATAATGTTAAATTGTAATCCAAAATGCAAATTTTTTTCAAAATACGAAATAATCAGAATTTAATCTAGCTCATTGAAGATCTGATTAGGGAGTTAATTTTTTGTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTTTGAAAATCCTGAAATTTAT</pcr_primer_p1>
		<pcr_primer_p2>TTCGAAGTTTTTGGAATATTTG</pcr_primer_p2>
		<pcr_amplicon_size>164</pcr_amplicon_size>
		<canonical_amplicon>AACTTTGAAAATCCTGAAATTTATTTCCGAAATAGAAAAAAATCTGAAATTTTCGAAAATATCCAAGTTCCAAAAATCCGAAATATTCCGAAAACTCCGAAAGTTCCAAAAAATTCAAAATTTCAAATTATCCTGAGAATTTCAAATATTCCAAAAACTTCGAA</canonical_amplicon>
		<polymorphic_amplicon>AACTTTGAAAATCCTGAAATTTATTTCCGAAATAGAAAAAAATCTGAAATTTTCGAAAATATCCAAGTTCCAAAAATCCGAAATATTCCGAAAAMTCCGAAAGTTCCAAAAAATTCAAAATTTCAAATTATCCTGAGAATTTCAAATATTCCAAAAACTTCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37640</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>484640</contig_pos>
        <strand></strand>
        <context>GTTCCAAAAA[A/T]TTCAAAAWTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCAAGTTCCAAAAATCCGAAATATTCCGAAAACTCCGAAAGTTCCAAAAA</left_flank>
        <right_flank>TTCAAAATTTCAAATTATCCTGAGAATTTCAAATATTCCAAAAACTTCGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAAGGGAATGGGACGACTCCTTCCGTTCGGATGGAAGCGGTAAACATGCGGATATGGAGAGATGTGCACTGATTTGAATTAACTGAGAATAAGAGAGGGGGCACCCTTCGAAAATAGAATGGTAATTATGTGGAGAAGAAGTGCGAATTCATAAAATTCGCGGATTTGCATTTTCAATCTTCAAGATGAGAGAGATTGATGGACTTCGAATAGTGTCAATATGAAGATTTTTAATTTTCTAAAGGAACATTAGAACCTAAAAATCCTGAAATTTTCGAAATTTCCGAAATACAAAATTCCGAAAATTCCAGAAATCTAATAACTCCAAGAATCCAAAAAATCGAAAAATTCCAAAATTTTCAAAACTTCCGAAAGTTAAAAAAAAAACTTTGAAAATCCTGAAATTTATTTCCGAAATAGAAAAAAATCTGAAATTTTCGAAAATATCCAAGTTCCAAAAATCCGAAATATTCCGAAAACTCCGAAAGTTCCAAAAAATTCAAAATTTCAAATTATCCTGAGAATTTCAAATATTCCAAAAACTTCGAAAATTAGAGAACATTTTGAAAATTTCGAAAAATCAAAAGAAAATTGAAAATTTTAAACATCCTTAAATATCCCAAAAATCCTGAAAATTTCAAAATTTCAAAAACTTCGGAGAATTTCAAATATTAAGAAAACATCGAAAACTTCAAAAAATTCCGAACTTTCAAGAATGAAAAAATTCCAAAATTTAAAATATTCCGAAAAATCTAAAAATCCAGAAAATTCAAAACAAATCCAAAAACTTTTAAAATTTTCAAAAAATTAAAAATCCTTAAAATGCCAAAATTTTATTTTTTCCAATACTTAATTTCATGGACATATGAATTCAATAATGTTAAATTGTAATCCAAAATGCAAATTTTTTTCAAAATACGAAATAATCAGAATTTAATCTAGCTCATTGAAGATCTGATTAGGGAGTTAATTTTTTGTAGCTTTCAATTCAGAACTCT</canonical>
            <polymorphic>AAGAAGGGAATGGGACGACTCCTTCCGTTCGGATGGAAGCGGTAAACATGCGGATATGGAGAGATGTGCACTGATTTGAATTAACTGAGAATAAGAGAGGGGGCACCCTTCGAAAATAGAATGGTAATTATGTGGAGAAGAAGTGCGAATTCATAAAATTCGCGGATTTGCATTTTCAATCTTCAAGATGAGAGAGATTGATGGACTTCGAATAGTGTCAATATGAAGATTTTTAATTTTCTAAAGGAACATTAGAACCTAAAAATCCTGAAATTTTCGAAATTTCCGAAATACAAAATTCCGAAAATTCCAGAAATCTAATAACTCCAAGAATCCAAAAAATCGAAAAATTCCAAAATTTTCAAAACTTCCGAAAGTTAAAAAAAAAACTTTGAAAATCCTGAAATTTATTTCCGAAATAGAAAAAAATCTGAAATTTTCGAAAATATCCAAGTTCCAAAAATCCGAAATATTCCGAAAACTCCGAAAGTTCCAAAAAWTTCAAAATTTCAAATTATCCTGAGAATTTCAAATATTCCAAAAACTTCGAAAATTAGAGAACATTTTGAAAATTTCGAAAAATCAAAAGAAAATTGAAAATTTTAAACATCCTTAAATATCCCAAAAATCCTGAAAATTTCAAAATTTCAAAAACTTCGGAGAATTTCAAATATTAAGAAAACATCGAAAACTTCAAAAAATTCCGAACTTTCAAGAATGAAAAAATTCCAAAATTTAAAATATTCCGAAAAATCTAAAAATCCAGAAAATTCAAAACAAATCCAAAAACTTTTAAAATTTTCAAAAAATTAAAAATCCTTAAAATGCCAAAATTTTATTTTTTCCAATACTTAATTTCATGGACATATGAATTCAATAATGTTAAATTGTAATCCAAAATGCAAATTTTTTTCAAAATACGAAATAATCAGAATTTAATCTAGCTCATTGAAGATCTGATTAGGGAGTTAATTTTTTGTAGCTTTCAATTCAGAACTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>147 115 68 64 48 46 43 39 37 37 36 35 34 30 28 28 28 25 19 19 16 9 9 9 8 8 8 7</canonical_bands>
                <polymorphic_bands>147 115 71 68 48 46 43 39 37 37 36 35 34 30 28 28 28 25 19 19 16 9 9 9 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>78 78 64 48 47 43 38 37 37 37 36 30 28 28 27 25 24 22 22 21 19 19 19 17 17 16 15 13 12 11 9 9 9 8 8 8 7 7 7</canonical_bands>
                <polymorphic_bands>78 78 71 48 47 43 38 37 37 37 36 30 28 28 27 25 24 22 22 21 19 19 19 17 17 16 15 13 12 11 9 9 9 8 8 8 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATATCCAAGTTCCAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGTTTTCGATGTTTTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>AAAATATCCAAGTTCCAAAAATCCGAAATATTCCGAAAACTCCGAAAGTTCCAAAAAATTCAAAATTTCAAATTATCCTGAGAATTTCAAATATTCCAAAAACTTCGAAAATTAGAGAACATTTTGAAAATTTCGAAAAATCAAAAGAAAATTGAAAATTTTAAACATCCTTAAATATCCCAAAAATCCTGAAAATTTCAAAATTTCAAAAACTTCGGAGAATTTCAAATATTAAGAAAACATCGAAAACTTCAA</canonical_amplicon>
		<polymorphic_amplicon>AAAATATCCAAGTTCCAAAAATCCGAAATATTCCGAAAACTCCGAAAGTTCCAAAAAWTTCAAAATTTCAAATTATCCTGAGAATTTCAAATATTCCAAAAACTTCGAAAATTAGAGAACATTTTGAAAATTTCGAAAAATCAAAAGAAAATTGAAAATTTTAAACATCCTTAAATATCCCAAAAATCCTGAAAATTTCAAAATTTCAAAAACTTCGGAGAATTTCAAATATTAAGAAAACATCGAAAACTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37641</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>484648</contig_pos>
        <strand>+</strand>
        <context>AAWTTCAAAA[A/T]TTCAAATTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAAAATCCGAAATATTCCGAAAACTCCGAAAGTTCCAAAAAATTCAAAA</left_flank>
        <right_flank>TTCAAATTATCCTGAGAATTTCAAATATTCCAAAAACTTCGAAAATTAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGGGACGACTCCTTCCGTTCGGATGGAAGCGGTAAACATGCGGATATGGAGAGATGTGCACTGATTTGAATTAACTGAGAATAAGAGAGGGGGCACCCTTCGAAAATAGAATGGTAATTATGTGGAGAAGAAGTGCGAATTCATAAAATTCGCGGATTTGCATTTTCAATCTTCAAGATGAGAGAGATTGATGGACTTCGAATAGTGTCAATATGAAGATTTTTAATTTTCTAAAGGAACATTAGAACCTAAAAATCCTGAAATTTTCGAAATTTCCGAAATACAAAATTCCGAAAATTCCAGAAATCTAATAACTCCAAGAATCCAAAAAATCGAAAAATTCCAAAATTTTCAAAACTTCCGAAAGTTAAAAAAAAAACTTTGAAAATCCTGAAATTTATTTCCGAAATAGAAAAAAATCTGAAATTTTCGAAAATATCCAAGTTCCAAAAATCCGAAATATTCCGAAAACTCCGAAAGTTCCAAAAAATTCAAAATTTCAAATTATCCTGAGAATTTCAAATATTCCAAAAACTTCGAAAATTAGAGAACATTTTGAAAATTTCGAAAAATCAAAAGAAAATTGAAAATTTTAAACATCCTTAAATATCCCAAAAATCCTGAAAATTTCAAAATTTCAAAAACTTCGGAGAATTTCAAATATTAAGAAAACATCGAAAACTTCAAAAAATTCCGAACTTTCAAGAATGAAAAAATTCCAAAATTTAAAATATTCCGAAAAATCTAAAAATCCAGAAAATTCAAAACAAATCCAAAAACTTTTAAAATTTTCAAAAAATTAAAAATCCTTAAAATGCCAAAATTTTATTTTTTCCAATACTTAATTTCATGGACATATGAATTCAATAATGTTAAATTGTAATCCAAAATGCAAATTTTTTTCAAAATACGAAATAATCAGAATTTAATCTAGCTCATTGAAGATCTGATTAGGGAGTTAATTTTTTGTAGCTTTCAATTCAGAACTCTTTTACTTA</canonical>
            <polymorphic>AATGGGACGACTCCTTCCGTTCGGATGGAAGCGGTAAACATGCGGATATGGAGAGATGTGCACTGATTTGAATTAACTGAGAATAAGAGAGGGGGCACCCTTCGAAAATAGAATGGTAATTATGTGGAGAAGAAGTGCGAATTCATAAAATTCGCGGATTTGCATTTTCAATCTTCAAGATGAGAGAGATTGATGGACTTCGAATAGTGTCAATATGAAGATTTTTAATTTTCTAAAGGAACATTAGAACCTAAAAATCCTGAAATTTTCGAAATTTCCGAAATACAAAATTCCGAAAATTCCAGAAATCTAATAACTCCAAGAATCCAAAAAATCGAAAAATTCCAAAATTTTCAAAACTTCCGAAAGTTAAAAAAAAAACTTTGAAAATCCTGAAATTTATTTCCGAAATAGAAAAAAATCTGAAATTTTCGAAAATATCCAAGTTCCAAAAATCCGAAATATTCCGAAAACTCCGAAAGTTCCAAAAAATTCAAAAWTTCAAATTATCCTGAGAATTTCAAATATTCCAAAAACTTCGAAAATTAGAGAACATTTTGAAAATTTCGAAAAATCAAAAGAAAATTGAAAATTTTAAACATCCTTAAATATCCCAAAAATCCTGAAAATTTCAAAATTTCAAAAACTTCGGAGAATTTCAAATATTAAGAAAACATCGAAAACTTCAAAAAATTCCGAACTTTCAAGAATGAAAAAATTCCAAAATTTAAAATATTCCGAAAAATCTAAAAATCCAGAAAATTCAAAACAAATCCAAAAACTTTTAAAATTTTCAAAAAATTAAAAATCCTTAAAATGCCAAAATTTTATTTTTTCCAATACTTAATTTCATGGACATATGAATTCAATAATGTTAAATTGTAATCCAAAATGCAAATTTTTTTCAAAATACGAAATAATCAGAATTTAATCTAGCTCATTGAAGATCTGATTAGGGAGTTAATTTTTTGTAGCTTTCAATTCAGAACTCTTTTACTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>139 115 76 64 48 46 43 39 37 37 36 35 34 30 28 28 28 25 19 19 16 9 9 9 8 8 8 7</canonical_bands>
                <polymorphic_bands>139 115 76 64 48 46 43 39 37 37 36 35 34 30 28 28 28 26 25 19 16 9 9 9 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>78 70 64 48 47 43 38 37 37 37 36 30 28 28 27 25 24 22 22 21 21 19 19 19 17 17 16 15 12 11 9 9 9 8 8 8 7 7 7</canonical_bands>
                <polymorphic_bands>78 70 64 48 47 43 38 37 37 37 36 30 28 28 27 25 24 22 22 21 21 19 19 19 17 17 16 15 14 12 11 9 9 9 8 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATATCCAAGTTCCAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>TTGAAGTTTTCGATGTTTTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>AAAATATCCAAGTTCCAAAAATCCGAAATATTCCGAAAACTCCGAAAGTTCCAAAAAATTCAAAATTTCAAATTATCCTGAGAATTTCAAATATTCCAAAAACTTCGAAAATTAGAGAACATTTTGAAAATTTCGAAAAATCAAAAGAAAATTGAAAATTTTAAACATCCTTAAATATCCCAAAAATCCTGAAAATTTCAAAATTTCAAAAACTTCGGAGAATTTCAAATATTAAGAAAACATCGAAAACTTCAA</canonical_amplicon>
		<polymorphic_amplicon>AAAATATCCAAGTTCCAAAAATCCGAAATATTCCGAAAACTCCGAAAGTTCCAAAAAATTCAAAAWTTCAAATTATCCTGAGAATTTCAAATATTCCAAAAACTTCGAAAATTAGAGAACATTTTGAAAATTTCGAAAAATCAAAAGAAAATTGAAAATTTTAAACATCCTTAAATATCCCAAAAATCCTGAAAATTTCAAAATTTCAAAAACTTCGGAGAATTTCAAATATTAAGAAAACATCGAAAACTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37642</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>484799</contig_pos>
        <strand>+</strand>
        <context>CAAAAACTTC[G/T]GAGAATTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATCCTTAAATATCCCAAAAATCCTGAAAATTTCAAAATTTCAAAAACTTC</left_flank>
        <right_flank>GAGAATTTCAAATATTAAGAAAACATCGAAAACTTCAAAAAATTCCGAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGCGGATTTGCATTTTCAATCTTCAAGATGAGAGAGATTGATGGACTTCGAATAGTGTCAATATGAAGATTTTTAATTTTCTAAAGGAACATTAGAACCTAAAAATCCTGAAATTTTCGAAATTTCCGAAATACAAAATTCCGAAAATTCCAGAAATCTAATAACTCCAAGAATCCAAAAAATCGAAAAATTCCAAAATTTTCAAAACTTCCGAAAGTTAAAAAAAAAACTTTGAAAATCCTGAAATTTATTTCCGAAATAGAAAAAAATCTGAAATTTTCGAAAATATCCAAGTTCCAAAAATCCGAAATATTCCGAAAACTCCGAAAGTTCCAAAAAATTCAAAATTTCAAATTATCCTGAGAATTTCAAATATTCCAAAAACTTCGAAAATTAGAGAACATTTTGAAAATTTCGAAAAATCAAAAGAAAATTGAAAATTTTAAACATCCTTAAATATCCCAAAAATCCTGAAAATTTCAAAATTTCAAAAACTTCGGAGAATTTCAAATATTAAGAAAACATCGAAAACTTCAAAAAATTCCGAACTTTCAAGAATGAAAAAATTCCAAAATTTAAAATATTCCGAAAAATCTAAAAATCCAGAAAATTCAAAACAAATCCAAAAACTTTTAAAATTTTCAAAAAATTAAAAATCCTTAAAATGCCAAAATTTTATTTTTTCCAATACTTAATTTCATGGACATATGAATTCAATAATGTTAAATTGTAATCCAAAATGCAAATTTTTTTCAAAATACGAAATAATCAGAATTTAATCTAGCTCATTGAAGATCTGATTAGGGAGTTAATTTTTTGTAGCTTTCAATTCAGAACTCTTTTACTTATTATAATTTTCGAATATTTGTACTTTCGAAATTCAGCTTCAAGATCTCTCCAAAACTTTATGCTTCATACCATTTTACCCATTTCTTACTCAATTCAAAACTTTTCGAATCATGATCCAAGTATTACGAAACGCTCTTGAAATGCATATCC</canonical>
            <polymorphic>TCGCGGATTTGCATTTTCAATCTTCAAGATGAGAGAGATTGATGGACTTCGAATAGTGTCAATATGAAGATTTTTAATTTTCTAAAGGAACATTAGAACCTAAAAATCCTGAAATTTTCGAAATTTCCGAAATACAAAATTCCGAAAATTCCAGAAATCTAATAACTCCAAGAATCCAAAAAATCGAAAAATTCCAAAATTTTCAAAACTTCCGAAAGTTAAAAAAAAAACTTTGAAAATCCTGAAATTTATTTCCGAAATAGAAAAAAATCTGAAATTTTCGAAAATATCCAAGTTCCAAAAATCCGAAATATTCCGAAAACTCCGAAAGTTCCAAAAAATTCAAAATTTCAAATTATCCTGAGAATTTCAAATATTCCAAAAACTTCGAAAATTAGAGAACATTTTGAAAATTTCGAAAAATCAAAAGAAAATTGAAAATTTTAAACATCCTTAAATATCCCAAAAATCCTGAAAATTTCAAAATTTCAAAAACTTCKGAGAATTTCAAATATTAAGAAAACATCGAAAACTTCAAAAAATTCCGAACTTTCAAGAATGAAAAAATTCCAAAATTTAAAATATTCCGAAAAATCTAAAAATCCAGAAAATTCAAAACAAATCCAAAAACTTTTAAAATTTTCAAAAAATTAAAAATCCTTAAAATGCCAAAATTTTATTTTTTCCAATACTTAATTTCATGGACATATGAATTCAATAATGTTAAATTGTAATCCAAAATGCAAATTTTTTTCAAAATACGAAATAATCAGAATTTAATCTAGCTCATTGAAGATCTGATTAGGGAGTTAATTTTTTGTAGCTTTCAATTCAGAACTCTTTTACTTATTATAATTTTCGAATATTTGTACTTTCGAAATTCAGCTTCAAGATCTCTCCAAAACTTTATGCTTCATACCATTTTACCCATTTCTTACTCAATTCAAAACTTTTCGAATCATGATCCAAGTATTACGAAACGCTCTTGAAATGCATATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGAAAATTAGAGAACATTTTG</pcr_primer_p1>
		<pcr_primer_p2>TAAAAGTTTTTGGATTTGTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCGAAAATTAGAGAACATTTTGAAAATTTCGAAAAATCAAAAGAAAATTGAAAATTTTAAACATCCTTAAATATCCCAAAAATCCTGAAAATTTCAAAATTTCAAAAACTTCGGAGAATTTCAAATATTAAGAAAACATCGAAAACTTCAAAAAATTCCGAACTTTCAAGAATGAAAAAATTCCAAAATTTAAAATATTCCGAAAAATCTAAAAATCCAGAAAATTCAAAACAAATCCAAAAACTTTTA</canonical_amplicon>
		<polymorphic_amplicon>TTCGAAAATTAGAGAACATTTTGAAAATTTCGAAAAATCAAAAGAAAATTGAAAATTTTAAACATCCTTAAATATCCCAAAAATCCTGAAAATTTCAAAATTTCAAAAACTTCKGAGAATTTCAAATATTAAGAAAACATCGAAAACTTCAAAAAATTCCGAACTTTCAAGAATGAAAAAATTCCAAAATTTAAAATATTCCGAAAAATCTAAAAATCCAGAAAATTCAAAACAAATCCAAAAACTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37643</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>486937</contig_pos>
        <strand>+</strand>
        <context>GGAAACTTCT[C/T]AAAAAAAGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTTTCTTTTTTCCTTTCCGGAATCCGACTTTTCTTGAAAGGAAACTTCT</left_flank>
        <right_flank>AAAAAAAGTGGGTGCTCTCGGTTTCCCAAGAGGATTTCAACTCGGGACCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTCTATTTTTTCGAGAATATCGTAATTGTTCTAATAGAAGCCCACCAGAAACTCCAACTTTGAGCTAGGAAATCTAGATTTCTGGGAAAGATATCACAAATGTGTAAACTATTAAAATATTGGTGATTTTATGAAGAAGAATCGATCAGTTGATCCCTTTTCAATATTTTTTACAGGAAATGAGGTATGTAGGCACTAAATAGACAGTTATCATTAGAGTGTCTACGGTATTTTGCTAATTTCCGAATGAAACCATTCATACCAAAATTCCTACTTGCCCATTTTTATTCCGGTTCCCAAAATCGTTATTTTTTGTCCTCAAATTTTACCAAATCCAAAAACTTCTCCTACAAAACTCCTGACCGATTCTTCATCCAACATCACTTTTTTCCCAAGTATCCCTTCGTCAAAAAGAAAAAAACCATCATCCATCAACCGTGTGTTGCCGTTTCTTTTTTCCTTTCCGGAATCCGACTTTTCTTGAAAGGAAACTTCTAAAAAAAAGTGGGTGCTCTCGGTTTCCCAAGAGGATTTCAACTCGGGACCCATTTTAGGATGTTTTGTGTAGCACTCATAAAATGAGTACATTTGCATAATCTGTGTGAAGAACACAAGACACTCACTGGAATCAGCTCAACATTTGACGTCGTCATTTCATTGGCGTCGGAGACAACATTTCTACTGTTCGGAGAATCTGAAGAATTAGAAGACGTTCAGATGATATGGAAAGAAAATATCGTTGGAAAAAATAACGGATAGAAACTGGGAGACACGAAAAAAGAAGAAGAAGAAGTGTGAATAAAAGGCATCCGTGCAAAATGTGCTAATTCCATTATACGAGACGAGAAGAAGATTAAACAAACATGGAAAAACGAGACGCACACACCGATCATCGTCACATTGTTGTGTGAAGATTATAGCTGTTTGGAAGAGGATGAAAAACTATATAACACCTTCCCGAAAATGGGATACACATTATATTCTCAAGTTTGAAGAT</canonical>
            <polymorphic>CTTTTCTATTTTTTCGAGAATATCGTAATTGTTCTAATAGAAGCCCACCAGAAACTCCAACTTTGAGCTAGGAAATCTAGATTTCTGGGAAAGATATCACAAATGTGTAAACTATTAAAATATTGGTGATTTTATGAAGAAGAATCGATCAGTTGATCCCTTTTCAATATTTTTTACAGGAAATGAGGTATGTAGGCACTAAATAGACAGTTATCATTAGAGTGTCTACGGTATTTTGCTAATTTCCGAATGAAACCATTCATACCAAAATTCCTACTTGCCCATTTTTATTCCGGTTCCCAAAATCGTTATTTTTTGTCCTCAAATTTTACCAAATCCAAAAACTTCTCCTACAAAACTCCTGACCGATTCTTCATCCAACATCACTTTTTTCCCAAGTATCCCTTCGTCAAAAAGAAAAAAACCATCATCCATCAACCGTGTGTTGCCGTTTCTTTTTTCCTTTCCGGAATCCGACTTTTCTTGAAAGGAAACTTCTYAAAAAAAGTGGGTGCTCTCGGTTTCCCAAGAGGATTTCAACTCGGGACCCATTTTAGGATGTTTTGTGTAGCACTCATAAAATGAGTACATTTGCATAATCTGTGTGAAGAACACAAGACACTCACTGGAATCAGCTCAACATTTGACGTCGTCATTTCATTGGCGTCGGAGACAACATTTCTACTGTTCGGAGAATCTGAAGAATTAGAAGACGTTCAGATGATATGGAAAGAAAATATCGTTGGAAAAAATAACGGATAGAAACTGGGAGACACGAAAAAAGAAGAAGAAGAAGTGTGAATAAAAGGCATCCGTGCAAAATGTGCTAATTCCATTATACGAGACGAGAAGAAGATTAAACAAACATGGAAAAACGAGACGCACACACCGATCATCGTCACATTGTTGTGTGAAGATTATAGCTGTTTGGAAGAGGATGAAAAACTATATAACACCTTCCCGAAAATGGGATACACATTATATTCTCAAGTTTGAAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTTCATCCAACATCACTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGTGTTCTTCACACAGATTATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTCTTCATCCAACATCACTTTTTTCCCAAGTATCCCTTCGTCAAAAAGAAAAAAACCATCATCCATCAACCGTGTGTTGCCGTTTCTTTTTTCCTTTCCGGAATCCGACTTTTCTTGAAAGGAAACTTCTAAAAAAAAGTGGGTGCTCTCGGTTTCCCAAGAGGATTTCAACTCGGGACCCATTTTAGGATGTTTTGTGTAGCACTCATAAAATGAGTACATTTGCATAATCTGTGTGAAGAACACAA</canonical_amplicon>
		<polymorphic_amplicon>ATTCTTCATCCAACATCACTTTTTTCCCAAGTATCCCTTCGTCAAAAAGAAAAAAACCATCATCCATCAACCGTGTGTTGCCGTTTCTTTTTTCCTTTCCGGAATCCGACTTTTCTTGAAAGGAAACTTCTYAAAAAAAGTGGGTGCTCTCGGTTTCCCAAGAGGATTTCAACTCGGGACCCATTTTAGGATGTTTTGTGTAGCACTCATAAAATGAGTACATTTGCATAATCTGTGTGAAGAACACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37644</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>576160</contig_pos>
        <strand>+</strand>
        <context>GGTAGAACAA[A/C]AAATCTGATT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GACATTGTTTTTGTAACAATAGGTTGTTTTCAGAACGTACGGTAGAACAA</left_flank>
        <right_flank>AAATCTGATTTTTTTCTGATTATTTTCTGAGATAAAATTAGAAAAGAAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAACTCAATTACATATAATTCACCTATCAATCACCATTTTGTTCACTCTCGGAAATTGGAGAGAAGATGAGATGATGGCATGTACCCCCCTAGGAGACACGACCGTTTTTTCCGTGTTGTGAAAAATTCCAATGTCTGGGGGGTCTTAATTTTGTACACTATGTTTTATGGTCGAGATGACAAGTATGTCTCCTGGTGGTGGGAAGAGAAATAAATGAAGAAAAAAGGGCTACTACATGCCTTCTTGCCTTTTTTGGAAGTTATTGACAAACAATCGTTTTGTAAGAATTTTTGCGAAAATTGAATGAATGAAATAAGGGAAATTTCGAGGACAAATGAGTCAAGATCTTGACAAAATTCAAAGTGAACACGAAGAAACGAAACAACTTTTGCCATCATTAATTTTAGAACAATAACAAAAAAAAAGAAATTGATCTGATCTAGATAGGACATTGTTTTTGTAACAATAGGTTGTTTTCAGAACGTACGGTAGAACAACAAATCTGATTTTTTTCTGATTATTTTCTGAGATAAAATTAGAAAAGAAGGAGCAAAGTTTAATTTTCGTGCTTTTTGTATTGGAATACTTTGAATATACCGTCAAATATGTAGAAGATAACACTCGAACTTTGAGCTAATTTATCTTGTTTTCTGTAAGAGATATCAGAAAGTTGTCCATTAATAAAATATTTACCATAATGTCACCTATATTTTATCAGTTGAACTCTTTTTGACATCTTTAACAGGAACCGAGATATATAAACTCAAAGAGCAAGTATAGGGTGGCCTTCTATTAGAGTGTTTAAGAGAGATTTGAGTTTCAGTATCTTGATCCTTTAGAGAATTTTCAGAAATTTTTCATTCATCACATTCAAGTTTTCCAGTTTTCTCCGAATTACCGTCTTCTTTAAAAAATGACTCATCTGAATCTTCCTCCTTCACTGTTTTTTATCACATACCTAGAGTTAAATAAACCACCCGCGACAAAACTTTCATCTT</canonical>
            <polymorphic>TCAACTCAATTACATATAATTCACCTATCAATCACCATTTTGTTCACTCTCGGAAATTGGAGAGAAGATGAGATGATGGCATGTACCCCCCTAGGAGACACGACCGTTTTTTCCGTGTTGTGAAAAATTCCAATGTCTGGGGGGTCTTAATTTTGTACACTATGTTTTATGGTCGAGATGACAAGTATGTCTCCTGGTGGTGGGAAGAGAAATAAATGAAGAAAAAAGGGCTACTACATGCCTTCTTGCCTTTTTTGGAAGTTATTGACAAACAATCGTTTTGTAAGAATTTTTGCGAAAATTGAATGAATGAAATAAGGGAAATTTCGAGGACAAATGAGTCAAGATCTTGACAAAATTCAAAGTGAACACGAAGAAACGAAACAACTTTTGCCATCATTAATTTTAGAACAATAACAAAAAAAAAGAAATTGATCTGATCTAGATAGGACATTGTTTTTGTAACAATAGGTTGTTTTCAGAACGTACGGTAGAACAAMAAATCTGATTTTTTTCTGATTATTTTCTGAGATAAAATTAGAAAAGAAGGAGCAAAGTTTAATTTTCGTGCTTTTTGTATTGGAATACTTTGAATATACCGTCAAATATGTAGAAGATAACACTCGAACTTTGAGCTAATTTATCTTGTTTTCTGTAAGAGATATCAGAAAGTTGTCCATTAATAAAATATTTACCATAATGTCACCTATATTTTATCAGTTGAACTCTTTTTGACATCTTTAACAGGAACCGAGATATATAAACTCAAAGAGCAAGTATAGGGTGGCCTTCTATTAGAGTGTTTAAGAGAGATTTGAGTTTCAGTATCTTGATCCTTTAGAGAATTTTCAGAAATTTTTCATTCATCACATTCAAGTTTTCCAGTTTTCTCCGAATTACCGTCTTCTTTAAAAAATGACTCATCTGAATCTTCCTCCTTCACTGTTTTTTATCACATACCTAGAGTTAAATAAACCACCCGCGACAAAACTTTCATCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATCTTGACAAAATTCAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>AAGTATTCCAATACAAAAAGCAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGATCTTGACAAAATTCAAAGTGAACACGAAGAAACGAAACAACTTTTGCCATCATTAATTTTAGAACAATAACAAAAAAAAAGAAATTGATCTGATCTAGATAGGACATTGTTTTTGTAACAATAGGTTGTTTTCAGAACGTACGGTAGAACAACAAATCTGATTTTTTTCTGATTATTTTCTGAGATAAAATTAGAAAAGAAGGAGCAAAGTTTAATTTTCGTGCTTTTTGTATTGGAATACTT</canonical_amplicon>
		<polymorphic_amplicon>AGATCTTGACAAAATTCAAAGTGAACACGAAGAAACGAAACAACTTTTGCCATCATTAATTTTAGAACAATAACAAAAAAAAAGAAATTGATCTGATCTAGATAGGACATTGTTTTTGTAACAATAGGTTGTTTTCAGAACGTACGGTAGAACAAMAAATCTGATTTTTTTCTGATTATTTTCTGAGATAAAATTAGAAAAGAAGGAGCAAAGTTTAATTTTCGTGCTTTTTGTATTGGAATACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37645</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>582107</contig_pos>
        <strand>+</strand>
        <context>TTCATAATTC[A/G]TTTTTTATTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCCACTAGATGCTATCAAGTAAGTTTCTTTTAAAAAACCTTCATAATTC</left_flank>
        <right_flank>TTTTTTATTAGGATGGCTGCTCTGGGGCTCGATTCGACCCGGCTGACAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACAATATCTTTCCAAGAAGAGGGACAAGTTACCACTCAACCAACAGTTGATGAGACGACAACTAAAAAGCCAGAAGAGACTACTACCCAAGTTGAGACATCGTCCACTTCAAAATCCACCACAACTTCCCAACTAACATCTGAAGTCGAATCAACTACGATATCCGAGTCGAATGATCCAGAACCAGCTATTGCTACGAAAGTAGAAATGGCAAAGGATACTGCTGGAGTCAAGACAACATTGCGAAAACGTAAGTGCATGGGAAATGGCATGTTTGAGAAGCAGTGTGATGTTTTGAAATGAACATTCTATTGGAAATTTAGAAAATTAATTGATTTCTGTTTCAGACTGCGTCATCAAGTTCCAAGCGAGACCTCTATCTGATCGTCCTGAGAATTTGAAAGCCAAATTCGAGTTGAATGTGCCAGTGGACTCTATTGAGCTTTGCGCCACTAGATGCTATCAAGTAAGTTTCTTTTAAAAAACCTTCATAATTCTTTTTTTATTAGGATGGCTGCTCTGGGGCTCGATTCGACCCGGCTGACAGATCCTGCACACTTTCCTACGATGACCCACAATTCTGCGCTCGTGGAAACGTTTTCATCCACTACGAAGCCAAGGAAGCCACCTGGTTGCATTGTGTCAATTGCTGTGAGTTTTTTGTTTCTACAACGGTTTTTGAATTTTGAACATTTCTAGACACGGTCAAGCAGAGCGACATTGATGAGGCTCGCACTGGAACCACATCTGCACCATCTAAAGAATCAGGATTTACCCCGACTTCTACTTCAGCTACTCCCTCCGATGATTCTACCACCACAGCAGTAGAGACCACAACATCATCTGAGAAAGCTCCATCGACATCTTCTGAACCATCAGTATCAGAAGAAACCACGGCGTCTATCGCTACTGCTACAATTAAACCATCAGAAGGATCAAACGACGCCGACTTCCAAAGAGGCTGTCTAATCAAGTTCCAAGCAAGACCACTTTCCGAA</canonical>
            <polymorphic>CTACAATATCTTTCCAAGAAGAGGGACAAGTTACCACTCAACCAACAGTTGATGAGACGACAACTAAAAAGCCAGAAGAGACTACTACCCAAGTTGAGACATCGTCCACTTCAAAATCCACCACAACTTCCCAACTAACATCTGAAGTCGAATCAACTACGATATCCGAGTCGAATGATCCAGAACCAGCTATTGCTACGAAAGTAGAAATGGCAAAGGATACTGCTGGAGTCAAGACAACATTGCGAAAACGTAAGTGCATGGGAAATGGCATGTTTGAGAAGCAGTGTGATGTTTTGAAATGAACATTCTATTGGAAATTTAGAAAATTAATTGATTTCTGTTTCAGACTGCGTCATCAAGTTCCAAGCGAGACCTCTATCTGATCGTCCTGAGAATTTGAAAGCCAAATTCGAGTTGAATGTGCCAGTGGACTCTATTGAGCTTTGCGCCACTAGATGCTATCAAGTAAGTTTCTTTTAAAAAACCTTCATAATTCRTTTTTTATTAGGATGGCTGCTCTGGGGCTCGATTCGACCCGGCTGACAGATCCTGCACACTTTCCTACGATGACCCACAATTCTGCGCTCGTGGAAACGTTTTCATCCACTACGAAGCCAAGGAAGCCACCTGGTTGCATTGTGTCAATTGCTGTGAGTTTTTTGTTTCTACAACGGTTTTTGAATTTTGAACATTTCTAGACACGGTCAAGCAGAGCGACATTGATGAGGCTCGCACTGGAACCACATCTGCACCATCTAAAGAATCAGGATTTACCCCGACTTCTACTTCAGCTACTCCCTCCGATGATTCTACCACCACAGCAGTAGAGACCACAACATCATCTGAGAAAGCTCCATCGACATCTTCTGAACCATCAGTATCAGAAGAAACCACGGCGTCTATCGCTACTGCTACAATTAAACCATCAGAAGGATCAAACGACGCCGACTTCCAAAGAGGCTGTCTAATCAAGTTCCAAGCAAGACCACTTTCCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGATTTCTGTTTCAGACTGC</pcr_primer_p1>
		<pcr_primer_p2>AGAATTGTGGGTCATCGTAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTGATTTCTGTTTCAGACTGCGTCATCAAGTTCCAAGCGAGACCTCTATCTGATCGTCCTGAGAATTTGAAAGCCAAATTCGAGTTGAATGTGCCAGTGGACTCTATTGAGCTTTGCGCCACTAGATGCTATCAAGTAAGTTTCTTTTAAAAAACCTTCATAATTCTTTTTTTATTAGGATGGCTGCTCTGGGGCTCGATTCGACCCGGCTGACAGATCCTGCACACTTTCCTACGATGACCCACAATTCT</canonical_amplicon>
		<polymorphic_amplicon>TTGATTTCTGTTTCAGACTGCGTCATCAAGTTCCAAGCGAGACCTCTATCTGATCGTCCTGAGAATTTGAAAGCCAAATTCGAGTTGAATGTGCCAGTGGACTCTATTGAGCTTTGCGCCACTAGATGCTATCAAGTAAGTTTCTTTTAAAAAACCTTCATAATTCRTTTTTTATTAGGATGGCTGCTCTGGGGCTCGATTCGACCCGGCTGACAGATCCTGCACACTTTCCTACGATGACCCACAATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37646</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>683651</contig_pos>
        <strand>+</strand>
        <context>CTCAAAATAG[C/T]TTTTTTTYCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACTCAGTTACTCATATGAAATAATTGATTTGCCTTAGCTCTCAAAATAG</left_flank>
        <right_flank>TTTTTTTCCCGGAAACTGATAATAATTGAACATTAACAATTGAAGCTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACCCTATACCTGCAAGTTGAGCTCAATTACATCAATTTCTACGAGAGGTAACAAAAATATGCCAACTGATGAAATTTTGGTGATGTTCTGAAAAAATTTTGTGGGATGATACAGTTTCGATATCTCTTACAGAAATTGAAATAACTAAGCTCAATGCGCCAGTTAAGATGGCCTTCTATTAGAGTGCTTACGGTAGTTTCAATAGTGGAACTCTTCAAAATTTTAATTTCTTCTCTAATTTTGAATTGTAACCGAATTTCAAGATCTTTGTCCCATTACCATGACAAATTTTCAGCACAAACCAGTTCACAAACTCCAATCCATCTTCCTCTTTGTGTCATATTTTGCACCGATTCACAGATTAAAGTAATCTTCTTCAGAATTTTTAAGCTATGTATATCCTTACATTTTTTCGTTTCTGTTCCTTTTTTGTTGTTTTTCGAATCAAAACTCAGTTACTCATATGAAATAATTGATTTGCCTTAGCTCTCAAAATAGTTTTTTTTCCCGGAAACTGATAATAATTGAACATTAACAATTGAAGCTTTTATTAGAAATCAATATCAATGTTTTTGAAAATCGGACGACGAATGACGATATCGAATAGTGCTCACAATTTCAAAATTTTCCCCTCGACATATAAAAGAGTAAATGGATAGAGATTATCATTGGGTTTGGAGAAAGATGTCTAACAGAAGAGAGTCATTCCATTCTCAATGAATTTATTCAAAATATGGGGCGGCATCCGGGCGGAACATCCAGTTTTGTTGAGGTTGAGTCGATTTGCGGAAGCGGATGAATGGCTGGATGTTAGCCTCTTCTGGAAAAAGTCTGTTGAAACCATTTTGAGGTAACGGTGCAACTTACGAGTCTGGCTTTTTCGGTGACGTGGTTGATAGTCCGATGATGGATAGGCCTGGGTGATGGCGAAGAGCACGAGAAGAGCCAAGATGAGGAATCGCATGGTGATTGGAAAACTGCAAGTTGTTGGATCAGTTA</canonical>
            <polymorphic>CACCCTATACCTGCAAGTTGAGCTCAATTACATCAATTTCTACGAGAGGTAACAAAAATATGCCAACTGATGAAATTTTGGTGATGTTCTGAAAAAATTTTGTGGGATGATACAGTTTCGATATCTCTTACAGAAATTGAAATAACTAAGCTCAATGCGCCAGTTAAGATGGCCTTCTATTAGAGTGCTTACGGTAGTTTCAATAGTGGAACTCTTCAAAATTTTAATTTCTTCTCTAATTTTGAATTGTAACCGAATTTCAAGATCTTTGTCCCATTACCATGACAAATTTTCAGCACAAACCAGTTCACAAACTCCAATCCATCTTCCTCTTTGTGTCATATTTTGCACCGATTCACAGATTAAAGTAATCTTCTTCAGAATTTTTAAGCTATGTATATCCTTACATTTTTTCGTTTCTGTTCCTTTTTTGTTGTTTTTCGAATCAAAACTCAGTTACTCATATGAAATAATTGATTTGCCTTAGCTCTCAAAATAGYTTTTTTTCCCGGAAACTGATAATAATTGAACATTAACAATTGAAGCTTTTATTAGAAATCAATATCAATGTTTTTGAAAATCGGACGACGAATGACGATATCGAATAGTGCTCACAATTTCAAAATTTTCCCCTCGACATATAAAAGAGTAAATGGATAGAGATTATCATTGGGTTTGGAGAAAGATGTCTAACAGAAGAGAGTCATTCCATTCTCAATGAATTTATTCAAAATATGGGGCGGCATCCGGGCGGAACATCCAGTTTTGTTGAGGTTGAGTCGATTTGCGGAAGCGGATGAATGGCTGGATGTTAGCCTCTTCTGGAAAAAGTCTGTTGAAACCATTTTGAGGTAACGGTGCAACTTACGAGTCTGGCTTTTTCGGTGACGTGGTTGATAGTCCGATGATGGATAGGCCTGGGTGATGGCGAAGAGCACGAGAAGAGCCAAGATGAGGAATCGCATGGTGATTGGAAAACTGCAAGTTGTTGGATCAGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCGAATCAAAACTCAGTTAC</pcr_primer_p1>
		<pcr_primer_p2>AAACCCAATGATAATCTCTATCC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TTTTCGAATCAAAACTCAGTTACTCATATGAAATAATTGATTTGCCTTAGCTCTCAAAATAGTTTTTTTTCCCGGAAACTGATAATAATTGAACATTAACAATTGAAGCTTTTATTAGAAATCAATATCAATGTTTTTGAAAATCGGACGACGAATGACGATATCGAATAGTGCTCACAATTTCAAAATTTTCCCCTCGACATATAAAAGAGTAAATGGATAGAGATTATCATTGGGTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCGAATCAAAACTCAGTTACTCATATGAAATAATTGATTTGCCTTAGCTCTCAAAATAGYTTTTTTTCCCGGAAACTGATAATAATTGAACATTAACAATTGAAGCTTTTATTAGAAATCAATATCAATGTTTTTGAAAATCGGACGACGAATGACGATATCGAATAGTGCTCACAATTTCAAAATTTTCCCCTCGACATATAAAAGAGTAAATGGATAGAGATTATCATTGGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37647</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>687379</contig_pos>
        <strand></strand>
        <context>GAGAAAAAAA[C/T]TAAAATATCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCATATTACACAGTCTGAGATGTAAGGATAAGAATGGATCGAGAAAAAAA</left_flank>
        <right_flank>TAAAATATCCGAAATGATGATATGAAAACAATCAGGATGGTGAGGAAACT</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGTTTTCTCGAAAAGTAAAAGTCGAAAACTGATGAAACTCAACAATATCATTACTCAGACGTACAAAAATTATAATCAAAAATAATTTTTCGATTCGACCACCGTTCACATCAGTTACGGCCTGAAGATGTCTTGGGTAGGCATCGATGGTGGCACGGTCCAGACTTGATGAATCGATTGATAACTTCAAAAAACCACTTGTCTGCAATCCGAATGCGTTAATGATCTCGTTTCGACTAACGCCCTACTTATAAAGACTGATTACAGTCGCATGGTGGACGTTAGCTCTTGCCATTTCCCTGAAACTCAAACCTGAAAAATCGGCGGAAATTAAATAGTAAAATTCATTTGTTCACTGAGTCACACCCGTTTAGCTGCTTCTTGATAATAACAAAAAAGATATCTGGAAGAAGGAAGGGAAAAGTGAATTTCACATTTTGAGACACGTCATATTACACAGTCTGAGATGTAAGGATAAGAATGGATCGAGAAAAAAACTAAAATATCCGAAATGATGATATGAAAACAATCAGGATGGTGAGGAAACTGGATAGAAGTCGATTAGTTCCATTGATGCAATCCACATGTTTGTTCTGAAATATAGTAAGATTGAGACAAAAATCTATGTCATTTGTATATTTTTAGTCTACAAAAGCAAACAGATGAGTGAACTCAAAATAAGTTATGAATAAACACACCTGAAGTTCGATTTTCCAATCATTCAGTGAATCTGGTCTTCGACGGGCATGAGAATGAACTACTTCGCATTTTTCCACTGAAATATCAGTTTATTTTTGATTAAATGAATAATTTAGAAATGTTGACTCTTTGTACGATATATACTAGACAAGCTGAGCAATATGGCCGATTCCATATAATAACCACAATTGAAAAGTAAGGTCTCAAAAAATTCCGGAAATTTTAAAGGTACTTTTTGGCCCCGAAAAATTTAAGACAGGAAAAAAATAACTGGAAATCGCGACCGTGCTGAGAAAATT</canonical>
            <polymorphic>GAGGTTTTCTCGAAAAGTAAAAGTCGAAAACTGATGAAACTCAACAATATCATTACTCAGACGTACAAAAATTATAATCAAAAATAATTTTTCGATTCGACCACCGTTCACATCAGTTACGGCCTGAAGATGTCTTGGGTAGGCATCGATGGTGGCACGGTCCAGACTTGATGAATCGATTGATAACTTCAAAAAACCACTTGTCTGCAATCCGAATGCGTTAATGATCTCGTTTCGACTAACGCCCTACTTATAAAGACTGATTACAGTCGCATGGTGGACGTTAGCTCTTGCCATTTCCCTGAAACTCAAACCTGAAAAATCGGCGGAAATTAAATAGTAAAATTCATTTGTTCACTGAGTCACACCCGTTTAGCTGCTTCTTGATAATAACAAAAAAGATATCTGGAAGAAGGAAGGGAAAAGTGAATTTCACATTTTGAGACACGTCATATTACACAGTCTGAGATGTAAGGATAAGAATGGATCGAGAAAAAAAYTAAAATATCCGAAATGATGATATGAAAACAATCAGGATGGTGAGGAAACTGGATAGAAGTCGATTAGTTCCATTGATGCAATCCACATGTTTGTTCTGAAATATAGTAAGATTGAGACAAAAATCTATGTCATTTGTATATTTTTAGTCTACAAAAGCAAACAGATGAGTGAACTCAAAATAAGTTATGAATAAACACACCTGAAGTTCGATTTTCCAATCATTCAGTGAATCTGGTCTTCGACGGGCATGAGAATGAACTACTTCGCATTTTTCCACTGAAATATCAGTTTATTTTTGATTAAATGAATAATTTAGAAATGTTGACTCTTTGTACGATATATACTAGACAAGCTGAGCAATATGGCCGATTCCATATAATAACCACAATTGAAAAGTAAGGTCTCAAAAAATTCCGGAAATTTTAAAGGTACTTTTTGGCCCCGAAAAATTTAAGACAGGAAAAAAATAACTGGAAATCGCGACCGTGCTGAGAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAGACACGTCATATTACACA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGAGTTCACTCATCTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TTTGAGACACGTCATATTACACAGTCTGAGATGTAAGGATAAGAATGGATCGAGAAAAAAACTAAAATATCCGAAATGATGATATGAAAACAATCAGGATGGTGAGGAAACTGGATAGAAGTCGATTAGTTCCATTGATGCAATCCACATGTTTGTTCTGAAATATAGTAAGATTGAGACAAAAATCTATGTCATTTGTATATTTTTAGTCTACAAAAGCAAACAGATGAGTGAACTCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAGACACGTCATATTACACAGTCTGAGATGTAAGGATAAGAATGGATCGAGAAAAAAAYTAAAATATCCGAAATGATGATATGAAAACAATCAGGATGGTGAGGAAACTGGATAGAAGTCGATTAGTTCCATTGATGCAATCCACATGTTTGTTCTGAAATATAGTAAGATTGAGACAAAAATCTATGTCATTTGTATATTTTTAGTCTACAAAAGCAAACAGATGAGTGAACTCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37648</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>744981</contig_pos>
        <strand></strand>
        <context>ATCAATACCT[C/A]CTTCTTCATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AATCAACATGGAGAAATTAATTTTATAATAGAAACTTGTGATCAATACCT</left_flank>
        <right_flank>CTTCTTCATAAATCTTAGATCTACTTAGAAGCACAACTTACTAAATTAGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGCTCATATCCAGAAAAATCTGTATACATTGATACTTCACTAACTAATTTCTTACACAACTTAGCTTCACTTGAGTATTCGATAATGTTCGGTTTGAAGACTTCATAACTTACTACTTTTGATTTTTCATTCAATTGTCTATGGTAATTACATTTGTGTAATTTTGGTAATTTAAAGTATTGAACTGGAGCATCAGAAGAACATATAATACTTTTAGCACTTGCCAAAATATCATAATGAGTAAATGTTAAAAAGAAATAGAATTGTAATACTCGAGAGAGATTCATTTACTTCAGAAAATTTATTTTAAATAAATTAAAAATGCCGGAATCAAAAATATTAGAAGCTGTTGATAGAATTTTGATTTTTGATAGTCCAATTGTTCAGGATACTTCAATTCAAAAAGAAAATTTGATTAGTATATTTCCTTCTAGTGGATCTTCTTTAAATCAACATGGAGAAATTAATTTTATAATAGAAACTTGTGATCAATACCTCCTTCTTCATAAATCTTAGATCTACTTAGAAGCACAACTTACTAAATTAGACTCTAGTGCATTATCCGAAGCTGATGAAGTATCATTAACAAATAATGCTCCTATGTTTTTATTTGATAGAGCTACTTACTCTTTAGATGGTATGCAAGTTGAAAATGTCATTGATCCTGGAAGAGCTTCACTTATGAAAGGACTTTTGACCTACAGTTTAACAATGAATAAGCAGAATACTTTTGGTTGGATCCTTGAGACTAAGGATATTATGACATATAAAATTAATAAATATACTAAAAATAGAAAAGGCTTACTTACTTTCTGTATTCCTCTGTCACACATTTTTGGATTCTCGGAGTGTTACACTCGCATTATTTATGGGAGAAAGCACCAACTTTCATTATACAGATCTCCAGAAAACAAGAATTCTATTACTTCCAGTGATCCTACTAAATTTACAGCTAAGATAGTGATAAACAAGATGCAATGGATAATTCCTAAAATAAT</canonical>
            <polymorphic>GATGCTCATATCCAGAAAAATCTGTATACATTGATACTTCACTAACTAATTTCTTACACAACTTAGCTTCACTTGAGTATTCGATAATGTTCGGTTTGAAGACTTCATAACTTACTACTTTTGATTTTTCATTCAATTGTCTATGGTAATTACATTTGTGTAATTTTGGTAATTTAAAGTATTGAACTGGAGCATCAGAAGAACATATAATACTTTTAGCACTTGCCAAAATATCATAATGAGTAAATGTTAAAAAGAAATAGAATTGTAATACTCGAGAGAGATTCATTTACTTCAGAAAATTTATTTTAAATAAATTAAAAATGCCGGAATCAAAAATATTAGAAGCTGTTGATAGAATTTTGATTTTTGATAGTCCAATTGTTCAGGATACTTCAATTCAAAAAGAAAATTTGATTAGTATATTTCCTTCTAGTGGATCTTCTTTAAATCAACATGGAGAAATTAATTTTATAATAGAAACTTGTGATCAATACCTMCTTCTTCATAAATCTTAGATCTACTTAGAAGCACAACTTACTAAATTAGACTCTAGTGCATTATCCGAAGCTGATGAAGTATCATTAACAAATAATGCTCCTATGTTTTTATTTGATAGAGCTACTTACTCTTTAGATGGTATGCAAGTTGAAAATGTCATTGATCCTGGAAGAGCTTCACTTATGAAAGGACTTTTGACCTACAGTTTAACAATGAATAAGCAGAATACTTTTGGTTGGATCCTTGAGACTAAGGATATTATGACATATAAAATTAATAAATATACTAAAAATAGAAAAGGCTTACTTACTTTCTGTATTCCTCTGTCACACATTTTTGGATTCTCGGAGTGTTACACTCGCATTATTTATGGGAGAAAGCACCAACTTTCATTATACAGATCTCCAGAAAACAAGAATTCTATTACTTCCAGTGATCCTACTAAATTTACAGCTAAGATAGTGATAAACAAGATGCAATGGATAATTCCTAAAATAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTAAATCAACATGGAGAAAT</pcr_primer_p1>
		<pcr_primer_p2>AGTCCTTTCATAAGTGAAGCTCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCTTTAAATCAACATGGAGAAATTAATTTTATAATAGAAACTTGTGATCAATACCTCCTTCTTCATAAATCTTAGATCTACTTAGAAGCACAACTTACTAAATTAGACTCTAGTGCATTATCCGAAGCTGATGAAGTATCATTAACAAATAATGCTCCTATGTTTTTATTTGATAGAGCTACTTACTCTTTAGATGGTATGCAAGTTGAAAATGTCATTGATCCTGGAAGAGCTTCACTTATGAAAGGACT</canonical_amplicon>
		<polymorphic_amplicon>TCTTTAAATCAACATGGAGAAATTAATTTTATAATAGAAACTTGTGATCAATACCTMCTTCTTCATAAATCTTAGATCTACTTAGAAGCACAACTTACTAAATTAGACTCTAGTGCATTATCCGAAGCTGATGAAGTATCATTAACAAATAATGCTCCTATGTTTTTATTTGATAGAGCTACTTACTCTTTAGATGGTATGCAAGTTGAAAATGTCATTGATCCTGGAAGAGCTTCACTTATGAAAGGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37649</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>750422</contig_pos>
        <strand>+</strand>
        <context>AAAAGAAAGT[A/T]GTGGAAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAACTGGAGAAGGACACTAAGAAGCAAACGGCAGAAATTGAAAAGAAAGT</left_flank>
        <right_flank>GTGGAAATTTCTAACGCCTTAAAGGATTTGGATGTGATGAAAAAGGTTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAGTCGGATGCCGGTTTCTGGTTCATCTGAAAATAGAACGAATTATTGAATAACTTCTAATAAAGAATTGATAATTATGGAAGAACCTCAATGCATTTAATATCACCTAAGGACATGACATCCGAAATATATATGAAATAGTATTCCTACAAATTTTATCCAAATGTTATGTCAGGGTTATTACGGCTTCTACTGTACTGGAAGTACTGCACCATGTTAGCGTAGATCCGAACAGAACTACAAAGATTTAAGCAAACTGACAGTGAAAGAGAAGAGATTTAACGTCAAATTCAATTCAAAATTTTTGTTCAAATTGATTCCGCTTTCACAAGTAGTTCCAGCTAGTTTGCATGTGGTGAATGGATGCGCACAAACTTTTGGCTTCAATGTTCTCAAACAATGGGCAGATGACCAGGAAACTATGGGATCGCTGCCTAAGAAAACTAGCAAACTGGAGAAGGACACTAAGAAGCAAACGGCAGAAATTGAAAAGAAAGTAGTGGAAATTTCTAACGCCTTAAAGGATTTGGATGTGATGAAAAAGGTTTACACGAAGTTCGTTGATGGAAAGACTGTAGAGTCGCGGTCCTCTAGAGATAACCTATGCGTAACGGATATTTGCCTATTTCGTGACAAAGAAGCATGCCAATTAGTGAACAAAACTACGGTTGATTGCAATGGTTGTGCGGGGAGAGCTCACGCAGTATGTTGTGGTATATGGACTGAAGACGAGTACCTGATAACACTCGACCAAAGTGTAGTTGCCCAGTGCTGGAGCTGTGAGGGGCTCGGCGTCAGTGAAATCCTTCTTTTTTGTGAGCAACAAACGACCGATCTGAAAAATGTGCACAATCAGTTGACAGAATCATTAAAGTTCGTGACACAATATTTGTATGTAATTGCTTGCATTGATTTCAGAGATGTCATTGAAACTGCTGATTATCGTGCAAATTTTTGGAAAGGAAACGGAAGTCTCCGAAAAGAATCGGAGCACAGATG</canonical>
            <polymorphic>GCAGTCGGATGCCGGTTTCTGGTTCATCTGAAAATAGAACGAATTATTGAATAACTTCTAATAAAGAATTGATAATTATGGAAGAACCTCAATGCATTTAATATCACCTAAGGACATGACATCCGAAATATATATGAAATAGTATTCCTACAAATTTTATCCAAATGTTATGTCAGGGTTATTACGGCTTCTACTGTACTGGAAGTACTGCACCATGTTAGCGTAGATCCGAACAGAACTACAAAGATTTAAGCAAACTGACAGTGAAAGAGAAGAGATTTAACGTCAAATTCAATTCAAAATTTTTGTTCAAATTGATTCCGCTTTCACAAGTAGTTCCAGCTAGTTTGCATGTGGTGAATGGATGCGCACAAACTTTTGGCTTCAATGTTCTCAAACAATGGGCAGATGACCAGGAAACTATGGGATCGCTGCCTAAGAAAACTAGCAAACTGGAGAAGGACACTAAGAAGCAAACGGCAGAAATTGAAAAGAAAGTWGTGGAAATTTCTAACGCCTTAAAGGATTTGGATGTGATGAAAAAGGTTTACACGAAGTTCGTTGATGGAAAGACTGTAGAGTCGCGGTCCTCTAGAGATAACCTATGCGTAACGGATATTTGCCTATTTCGTGACAAAGAAGCATGCCAATTAGTGAACAAAACTACGGTTGATTGCAATGGTTGTGCGGGGAGAGCTCACGCAGTATGTTGTGGTATATGGACTGAAGACGAGTACCTGATAACACTCGACCAAAGTGTAGTTGCCCAGTGCTGGAGCTGTGAGGGGCTCGGCGTCAGTGAAATCCTTCTTTTTTGTGAGCAACAAACGACCGATCTGAAAAATGTGCACAATCAGTTGACAGAATCATTAAAGTTCGTGACACAATATTTGTATGTAATTGCTTGCATTGATTTCAGAGATGTCATTGAAACTGCTGATTATCGTGCAAATTTTTGGAAAGGAAACGGAAGTCTCCGAAAAGAATCGGAGCACAGATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGAAAACTAGCAAACTGGAGA</pcr_primer_p1>
		<pcr_primer_p2>ATCAACCGTAGTTTTGTTCACTA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TAAGAAAACTAGCAAACTGGAGAAGGACACTAAGAAGCAAACGGCAGAAATTGAAAAGAAAGTAGTGGAAATTTCTAACGCCTTAAAGGATTTGGATGTGATGAAAAAGGTTTACACGAAGTTCGTTGATGGAAAGACTGTAGAGTCGCGGTCCTCTAGAGATAACCTATGCGTAACGGATATTTGCCTATTTCGTGACAAAGAAGCATGCCAATTAGTGAACAAAACTACGGTTGAT</canonical_amplicon>
		<polymorphic_amplicon>TAAGAAAACTAGCAAACTGGAGAAGGACACTAAGAAGCAAACGGCAGAAATTGAAAAGAAAGTWGTGGAAATTTCTAACGCCTTAAAGGATTTGGATGTGATGAAAAAGGTTTACACGAAGTTCGTTGATGGAAAGACTGTAGAGTCGCGGTCCTCTAGAGATAACCTATGCGTAACGGATATTTGCCTATTTCGTGACAAAGAAGCATGCCAATTAGTGAACAAAACTACGGTTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37650</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>750473</contig_pos>
        <strand>+</strand>
        <context>AAAAGGTTTA[C/T]ACGAAGTTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGGAAATTTCTAACGCCTTAAAGGATTTGGATGTGATGAAAAAGGTTTA</left_flank>
        <right_flank>ACGAAGTTCGTTGATGGAAAGACTGTAGAGTCGCGGTCCTCTAGAGATAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACTTCTAATAAAGAATTGATAATTATGGAAGAACCTCAATGCATTTAATATCACCTAAGGACATGACATCCGAAATATATATGAAATAGTATTCCTACAAATTTTATCCAAATGTTATGTCAGGGTTATTACGGCTTCTACTGTACTGGAAGTACTGCACCATGTTAGCGTAGATCCGAACAGAACTACAAAGATTTAAGCAAACTGACAGTGAAAGAGAAGAGATTTAACGTCAAATTCAATTCAAAATTTTTGTTCAAATTGATTCCGCTTTCACAAGTAGTTCCAGCTAGTTTGCATGTGGTGAATGGATGCGCACAAACTTTTGGCTTCAATGTTCTCAAACAATGGGCAGATGACCAGGAAACTATGGGATCGCTGCCTAAGAAAACTAGCAAACTGGAGAAGGACACTAAGAAGCAAACGGCAGAAATTGAAAAGAAAGTAGTGGAAATTTCTAACGCCTTAAAGGATTTGGATGTGATGAAAAAGGTTTACACGAAGTTCGTTGATGGAAAGACTGTAGAGTCGCGGTCCTCTAGAGATAACCTATGCGTAACGGATATTTGCCTATTTCGTGACAAAGAAGCATGCCAATTAGTGAACAAAACTACGGTTGATTGCAATGGTTGTGCGGGGAGAGCTCACGCAGTATGTTGTGGTATATGGACTGAAGACGAGTACCTGATAACACTCGACCAAAGTGTAGTTGCCCAGTGCTGGAGCTGTGAGGGGCTCGGCGTCAGTGAAATCCTTCTTTTTTGTGAGCAACAAACGACCGATCTGAAAAATGTGCACAATCAGTTGACAGAATCATTAAAGTTCGTGACACAATATTTGTATGTAATTGCTTGCATTGATTTCAGAGATGTCATTGAAACTGCTGATTATCGTGCAAATTTTTGGAAAGGAAACGGAAGTCTCCGAAAAGAATCGGAGCACAGATGGAGAAGAAATGGAGCTGATATTAGTGCGATTTTTGGAAAGGAAACGGAAGT</canonical>
            <polymorphic>TAACTTCTAATAAAGAATTGATAATTATGGAAGAACCTCAATGCATTTAATATCACCTAAGGACATGACATCCGAAATATATATGAAATAGTATTCCTACAAATTTTATCCAAATGTTATGTCAGGGTTATTACGGCTTCTACTGTACTGGAAGTACTGCACCATGTTAGCGTAGATCCGAACAGAACTACAAAGATTTAAGCAAACTGACAGTGAAAGAGAAGAGATTTAACGTCAAATTCAATTCAAAATTTTTGTTCAAATTGATTCCGCTTTCACAAGTAGTTCCAGCTAGTTTGCATGTGGTGAATGGATGCGCACAAACTTTTGGCTTCAATGTTCTCAAACAATGGGCAGATGACCAGGAAACTATGGGATCGCTGCCTAAGAAAACTAGCAAACTGGAGAAGGACACTAAGAAGCAAACGGCAGAAATTGAAAAGAAAGTAGTGGAAATTTCTAACGCCTTAAAGGATTTGGATGTGATGAAAAAGGTTTAYACGAAGTTCGTTGATGGAAAGACTGTAGAGTCGCGGTCCTCTAGAGATAACCTATGCGTAACGGATATTTGCCTATTTCGTGACAAAGAAGCATGCCAATTAGTGAACAAAACTACGGTTGATTGCAATGGTTGTGCGGGGAGAGCTCACGCAGTATGTTGTGGTATATGGACTGAAGACGAGTACCTGATAACACTCGACCAAAGTGTAGTTGCCCAGTGCTGGAGCTGTGAGGGGCTCGGCGTCAGTGAAATCCTTCTTTTTTGTGAGCAACAAACGACCGATCTGAAAAATGTGCACAATCAGTTGACAGAATCATTAAAGTTCGTGACACAATATTTGTATGTAATTGCTTGCATTGATTTCAGAGATGTCATTGAAACTGCTGATTATCGTGCAAATTTTTGGAAAGGAAACGGAAGTCTCCGAAAAGAATCGGAGCACAGATGGAGAAGAAATGGAGCTGATATTAGTGCGATTTTTGGAAAGGAAACGGAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>106 94 81 64 63 55 54 46 38 33 32 32 31 31 29 27 25 23 18 18 16 14 13 13 13 12 11 3 3 2</canonical_bands>
                <polymorphic_bands>106 97 94 64 63 55 54 46 38 33 32 32 31 31 29 27 25 23 18 18 14 13 13 13 12 11 3 3 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>497 192 192 108 11</canonical_bands>
                <polymorphic_bands>605 192 192 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCAGAAATTGAAAAGAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTCAGTCCATATACCACAACATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGCAGAAATTGAAAAGAAAGTAGTGGAAATTTCTAACGCCTTAAAGGATTTGGATGTGATGAAAAAGGTTTACACGAAGTTCGTTGATGGAAAGACTGTAGAGTCGCGGTCCTCTAGAGATAACCTATGCGTAACGGATATTTGCCTATTTCGTGACAAAGAAGCATGCCAATTAGTGAACAAAACTACGGTTGATTGCAATGGTTGTGCGGGGAGAGCTCACGCAGTATGTTGTGGTATATGGACTGAA</canonical_amplicon>
		<polymorphic_amplicon>GGCAGAAATTGAAAAGAAAGTAGTGGAAATTTCTAACGCCTTAAAGGATTTGGATGTGATGAAAAAGGTTTAYACGAAGTTCGTTGATGGAAAGACTGTAGAGTCGCGGTCCTCTAGAGATAACCTATGCGTAACGGATATTTGCCTATTTCGTGACAAAGAAGCATGCCAATTAGTGAACAAAACTACGGTTGATTGCAATGGTTGTGCGGGGAGAGCTCACGCAGTATGTTGTGGTATATGGACTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37651</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>750533</contig_pos>
        <strand>+</strand>
        <context>ACCTATGCGT[A/T]ACGGATATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTGATGGAAAGACTGTAGAGTCGCGGTCCTCTAGAGATAACCTATGCGT</left_flank>
        <right_flank>ACGGATATTTGCCTATTTCGTGACAAAGAAGCATGCCAATTAGTGAACAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGACATGACATCCGAAATATATATGAAATAGTATTCCTACAAATTTTATCCAAATGTTATGTCAGGGTTATTACGGCTTCTACTGTACTGGAAGTACTGCACCATGTTAGCGTAGATCCGAACAGAACTACAAAGATTTAAGCAAACTGACAGTGAAAGAGAAGAGATTTAACGTCAAATTCAATTCAAAATTTTTGTTCAAATTGATTCCGCTTTCACAAGTAGTTCCAGCTAGTTTGCATGTGGTGAATGGATGCGCACAAACTTTTGGCTTCAATGTTCTCAAACAATGGGCAGATGACCAGGAAACTATGGGATCGCTGCCTAAGAAAACTAGCAAACTGGAGAAGGACACTAAGAAGCAAACGGCAGAAATTGAAAAGAAAGTAGTGGAAATTTCTAACGCCTTAAAGGATTTGGATGTGATGAAAAAGGTTTACACGAAGTTCGTTGATGGAAAGACTGTAGAGTCGCGGTCCTCTAGAGATAACCTATGCGTAACGGATATTTGCCTATTTCGTGACAAAGAAGCATGCCAATTAGTGAACAAAACTACGGTTGATTGCAATGGTTGTGCGGGGAGAGCTCACGCAGTATGTTGTGGTATATGGACTGAAGACGAGTACCTGATAACACTCGACCAAAGTGTAGTTGCCCAGTGCTGGAGCTGTGAGGGGCTCGGCGTCAGTGAAATCCTTCTTTTTTGTGAGCAACAAACGACCGATCTGAAAAATGTGCACAATCAGTTGACAGAATCATTAAAGTTCGTGACACAATATTTGTATGTAATTGCTTGCATTGATTTCAGAGATGTCATTGAAACTGCTGATTATCGTGCAAATTTTTGGAAAGGAAACGGAAGTCTCCGAAAAGAATCGGAGCACAGATGGAGAAGAAATGGAGCTGATATTAGTGCGATTTTTGGAAAGGAAACGGAAGTCTCCGAAAAGAATCGGAGCACAGATGGAGAAGAAATGGAGCTGATATTAGTGCGTTCAAG</canonical>
            <polymorphic>GGACATGACATCCGAAATATATATGAAATAGTATTCCTACAAATTTTATCCAAATGTTATGTCAGGGTTATTACGGCTTCTACTGTACTGGAAGTACTGCACCATGTTAGCGTAGATCCGAACAGAACTACAAAGATTTAAGCAAACTGACAGTGAAAGAGAAGAGATTTAACGTCAAATTCAATTCAAAATTTTTGTTCAAATTGATTCCGCTTTCACAAGTAGTTCCAGCTAGTTTGCATGTGGTGAATGGATGCGCACAAACTTTTGGCTTCAATGTTCTCAAACAATGGGCAGATGACCAGGAAACTATGGGATCGCTGCCTAAGAAAACTAGCAAACTGGAGAAGGACACTAAGAAGCAAACGGCAGAAATTGAAAAGAAAGTAGTGGAAATTTCTAACGCCTTAAAGGATTTGGATGTGATGAAAAAGGTTTACACGAAGTTCGTTGATGGAAAGACTGTAGAGTCGCGGTCCTCTAGAGATAACCTATGCGTWACGGATATTTGCCTATTTCGTGACAAAGAAGCATGCCAATTAGTGAACAAAACTACGGTTGATTGCAATGGTTGTGCGGGGAGAGCTCACGCAGTATGTTGTGGTATATGGACTGAAGACGAGTACCTGATAACACTCGACCAAAGTGTAGTTGCCCAGTGCTGGAGCTGTGAGGGGCTCGGCGTCAGTGAAATCCTTCTTTTTTGTGAGCAACAAACGACCGATCTGAAAAATGTGCACAATCAGTTGACAGAATCATTAAAGTTCGTGACACAATATTTGTATGTAATTGCTTGCATTGATTTCAGAGATGTCATTGAAACTGCTGATTATCGTGCAAATTTTTGGAAAGGAAACGGAAGTCTCCGAAAAGAATCGGAGCACAGATGGAGAAGAAATGGAGCTGATATTAGTGCGATTTTTGGAAAGGAAACGGAAGTCTCCGAAAAGAATCGGAGCACAGATGGAGAAGAAATGGAGCTGATATTAGTGCGTTCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCAGAAATTGAAAAGAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTCAGTCCATATACCACAACATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGCAGAAATTGAAAAGAAAGTAGTGGAAATTTCTAACGCCTTAAAGGATTTGGATGTGATGAAAAAGGTTTACACGAAGTTCGTTGATGGAAAGACTGTAGAGTCGCGGTCCTCTAGAGATAACCTATGCGTAACGGATATTTGCCTATTTCGTGACAAAGAAGCATGCCAATTAGTGAACAAAACTACGGTTGATTGCAATGGTTGTGCGGGGAGAGCTCACGCAGTATGTTGTGGTATATGGACTGAA</canonical_amplicon>
		<polymorphic_amplicon>GGCAGAAATTGAAAAGAAAGTAGTGGAAATTTCTAACGCCTTAAAGGATTTGGATGTGATGAAAAAGGTTTACACGAAGTTCGTTGATGGAAAGACTGTAGAGTCGCGGTCCTCTAGAGATAACCTATGCGTWACGGATATTTGCCTATTTCGTGACAAAGAAGCATGCCAATTAGTGAACAAAACTACGGTTGATTGCAATGGTTGTGCGGGGAGAGCTCACGCAGTATGTTGTGGTATATGGACTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37652</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>750564</contig_pos>
        <strand>+</strand>
        <context>TGACAAAGAA[G/T]CATGCCAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTAGAGATAACCTATGCGTAACGGATATTTGCCTATTTCGTGACAAAGAA</left_flank>
        <right_flank>CATGCCAATTAGTGAACAAAACTACGGTTGATTGCAATGGTTGTGCGGGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTCCTACAAATTTTATCCAAATGTTATGTCAGGGTTATTACGGCTTCTACTGTACTGGAAGTACTGCACCATGTTAGCGTAGATCCGAACAGAACTACAAAGATTTAAGCAAACTGACAGTGAAAGAGAAGAGATTTAACGTCAAATTCAATTCAAAATTTTTGTTCAAATTGATTCCGCTTTCACAAGTAGTTCCAGCTAGTTTGCATGTGGTGAATGGATGCGCACAAACTTTTGGCTTCAATGTTCTCAAACAATGGGCAGATGACCAGGAAACTATGGGATCGCTGCCTAAGAAAACTAGCAAACTGGAGAAGGACACTAAGAAGCAAACGGCAGAAATTGAAAAGAAAGTAGTGGAAATTTCTAACGCCTTAAAGGATTTGGATGTGATGAAAAAGGTTTACACGAAGTTCGTTGATGGAAAGACTGTAGAGTCGCGGTCCTCTAGAGATAACCTATGCGTAACGGATATTTGCCTATTTCGTGACAAAGAAGCATGCCAATTAGTGAACAAAACTACGGTTGATTGCAATGGTTGTGCGGGGAGAGCTCACGCAGTATGTTGTGGTATATGGACTGAAGACGAGTACCTGATAACACTCGACCAAAGTGTAGTTGCCCAGTGCTGGAGCTGTGAGGGGCTCGGCGTCAGTGAAATCCTTCTTTTTTGTGAGCAACAAACGACCGATCTGAAAAATGTGCACAATCAGTTGACAGAATCATTAAAGTTCGTGACACAATATTTGTATGTAATTGCTTGCATTGATTTCAGAGATGTCATTGAAACTGCTGATTATCGTGCAAATTTTTGGAAAGGAAACGGAAGTCTCCGAAAAGAATCGGAGCACAGATGGAGAAGAAATGGAGCTGATATTAGTGCGATTTTTGGAAAGGAAACGGAAGTCTCCGAAAAGAATCGGAGCACAGATGGAGAAGAAATGGAGCTGATATTAGTGCGTTCAAGCAAGATTTCACTGGAAACCACATTGCCAAGC</canonical>
            <polymorphic>TATTCCTACAAATTTTATCCAAATGTTATGTCAGGGTTATTACGGCTTCTACTGTACTGGAAGTACTGCACCATGTTAGCGTAGATCCGAACAGAACTACAAAGATTTAAGCAAACTGACAGTGAAAGAGAAGAGATTTAACGTCAAATTCAATTCAAAATTTTTGTTCAAATTGATTCCGCTTTCACAAGTAGTTCCAGCTAGTTTGCATGTGGTGAATGGATGCGCACAAACTTTTGGCTTCAATGTTCTCAAACAATGGGCAGATGACCAGGAAACTATGGGATCGCTGCCTAAGAAAACTAGCAAACTGGAGAAGGACACTAAGAAGCAAACGGCAGAAATTGAAAAGAAAGTAGTGGAAATTTCTAACGCCTTAAAGGATTTGGATGTGATGAAAAAGGTTTACACGAAGTTCGTTGATGGAAAGACTGTAGAGTCGCGGTCCTCTAGAGATAACCTATGCGTAACGGATATTTGCCTATTTCGTGACAAAGAAKCATGCCAATTAGTGAACAAAACTACGGTTGATTGCAATGGTTGTGCGGGGAGAGCTCACGCAGTATGTTGTGGTATATGGACTGAAGACGAGTACCTGATAACACTCGACCAAAGTGTAGTTGCCCAGTGCTGGAGCTGTGAGGGGCTCGGCGTCAGTGAAATCCTTCTTTTTTGTGAGCAACAAACGACCGATCTGAAAAATGTGCACAATCAGTTGACAGAATCATTAAAGTTCGTGACACAATATTTGTATGTAATTGCTTGCATTGATTTCAGAGATGTCATTGAAACTGCTGATTATCGTGCAAATTTTTGGAAAGGAAACGGAAGTCTCCGAAAAGAATCGGAGCACAGATGGAGAAGAAATGGAGCTGATATTAGTGCGATTTTTGGAAAGGAAACGGAAGTCTCCGAAAAGAATCGGAGCACAGATGGAGAAGAAATGGAGCTGATATTAGTGCGTTCAAGCAAGATTTCACTGGAAACCACATTGCCAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCATGC</site>
                <isoschizomers>
                    <enzyme>BbuI</enzyme>
                    <enzyme>PaeI</enzyme>
                    <enzyme>SpaHI</enzyme>
                    <enzyme>SphI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 261 237</canonical_bands>
                <polymorphic_bands>763 237</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>496 292 212</canonical_bands>
                <polymorphic_bands>788 212</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCAGAAATTGAAAAGAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTCAGTCCATATACCACAACATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGCAGAAATTGAAAAGAAAGTAGTGGAAATTTCTAACGCCTTAAAGGATTTGGATGTGATGAAAAAGGTTTACACGAAGTTCGTTGATGGAAAGACTGTAGAGTCGCGGTCCTCTAGAGATAACCTATGCGTAACGGATATTTGCCTATTTCGTGACAAAGAAGCATGCCAATTAGTGAACAAAACTACGGTTGATTGCAATGGTTGTGCGGGGAGAGCTCACGCAGTATGTTGTGGTATATGGACTGAA</canonical_amplicon>
		<polymorphic_amplicon>GGCAGAAATTGAAAAGAAAGTAGTGGAAATTTCTAACGCCTTAAAGGATTTGGATGTGATGAAAAAGGTTTACACGAAGTTCGTTGATGGAAAGACTGTAGAGTCGCGGTCCTCTAGAGATAACCTATGCGTAACGGATATTTGCCTATTTCGTGACAAAGAAKCATGCCAATTAGTGAACAAAACTACGGTTGATTGCAATGGTTGTGCGGGGAGAGCTCACGCAGTATGTTGTGGTATATGGACTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37653</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>750600</contig_pos>
        <strand>+</strand>
        <context>GGTTGATTGC[A/T]ATGGTTGTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCGTGACAAAGAAGCATGCCAATTAGTGAACAAAACTACGGTTGATTGC</left_flank>
        <right_flank>ATGGTTGTGCGGGGAGAGCTCACGCAGTATGTTGTGGTATATGGACTGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATTACGGCTTCTACTGTACTGGAAGTACTGCACCATGTTAGCGTAGATCCGAACAGAACTACAAAGATTTAAGCAAACTGACAGTGAAAGAGAAGAGATTTAACGTCAAATTCAATTCAAAATTTTTGTTCAAATTGATTCCGCTTTCACAAGTAGTTCCAGCTAGTTTGCATGTGGTGAATGGATGCGCACAAACTTTTGGCTTCAATGTTCTCAAACAATGGGCAGATGACCAGGAAACTATGGGATCGCTGCCTAAGAAAACTAGCAAACTGGAGAAGGACACTAAGAAGCAAACGGCAGAAATTGAAAAGAAAGTAGTGGAAATTTCTAACGCCTTAAAGGATTTGGATGTGATGAAAAAGGTTTACACGAAGTTCGTTGATGGAAAGACTGTAGAGTCGCGGTCCTCTAGAGATAACCTATGCGTAACGGATATTTGCCTATTTCGTGACAAAGAAGCATGCCAATTAGTGAACAAAACTACGGTTGATTGCAATGGTTGTGCGGGGAGAGCTCACGCAGTATGTTGTGGTATATGGACTGAAGACGAGTACCTGATAACACTCGACCAAAGTGTAGTTGCCCAGTGCTGGAGCTGTGAGGGGCTCGGCGTCAGTGAAATCCTTCTTTTTTGTGAGCAACAAACGACCGATCTGAAAAATGTGCACAATCAGTTGACAGAATCATTAAAGTTCGTGACACAATATTTGTATGTAATTGCTTGCATTGATTTCAGAGATGTCATTGAAACTGCTGATTATCGTGCAAATTTTTGGAAAGGAAACGGAAGTCTCCGAAAAGAATCGGAGCACAGATGGAGAAGAAATGGAGCTGATATTAGTGCGATTTTTGGAAAGGAAACGGAAGTCTCCGAAAAGAATCGGAGCACAGATGGAGAAGAAATGGAGCTGATATTAGTGCGTTCAAGCAAGATTTCACTGGAAACCACATTGCCAAGCTCCTCAAAACAGAAGCCATCGACGACTACACCTCTA</canonical>
            <polymorphic>TTATTACGGCTTCTACTGTACTGGAAGTACTGCACCATGTTAGCGTAGATCCGAACAGAACTACAAAGATTTAAGCAAACTGACAGTGAAAGAGAAGAGATTTAACGTCAAATTCAATTCAAAATTTTTGTTCAAATTGATTCCGCTTTCACAAGTAGTTCCAGCTAGTTTGCATGTGGTGAATGGATGCGCACAAACTTTTGGCTTCAATGTTCTCAAACAATGGGCAGATGACCAGGAAACTATGGGATCGCTGCCTAAGAAAACTAGCAAACTGGAGAAGGACACTAAGAAGCAAACGGCAGAAATTGAAAAGAAAGTAGTGGAAATTTCTAACGCCTTAAAGGATTTGGATGTGATGAAAAAGGTTTACACGAAGTTCGTTGATGGAAAGACTGTAGAGTCGCGGTCCTCTAGAGATAACCTATGCGTAACGGATATTTGCCTATTTCGTGACAAAGAAGCATGCCAATTAGTGAACAAAACTACGGTTGATTGCWATGGTTGTGCGGGGAGAGCTCACGCAGTATGTTGTGGTATATGGACTGAAGACGAGTACCTGATAACACTCGACCAAAGTGTAGTTGCCCAGTGCTGGAGCTGTGAGGGGCTCGGCGTCAGTGAAATCCTTCTTTTTTGTGAGCAACAAACGACCGATCTGAAAAATGTGCACAATCAGTTGACAGAATCATTAAAGTTCGTGACACAATATTTGTATGTAATTGCTTGCATTGATTTCAGAGATGTCATTGAAACTGCTGATTATCGTGCAAATTTTTGGAAAGGAAACGGAAGTCTCCGAAAAGAATCGGAGCACAGATGGAGAAGAAATGGAGCTGATATTAGTGCGATTTTTGGAAAGGAAACGGAAGTCTCCGAAAAGAATCGGAGCACAGATGGAGAAGAAATGGAGCTGATATTAGTGCGTTCAAGCAAGATTTCACTGGAAACCACATTGCCAAGCTCCTCAAAACAGAAGCCATCGACGACTACACCTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>326 230 172 140 59 41 32</canonical_bands>
                <polymorphic_bands>498 230 140 59 41 32</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCCTATTTCGTGACAAAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATGATTCTGTCAACTGATTGTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCCTATTTCGTGACAAAGAAGCATGCCAATTAGTGAACAAAACTACGGTTGATTGCAATGGTTGTGCGGGGAGAGCTCACGCAGTATGTTGTGGTATATGGACTGAAGACGAGTACCTGATAACACTCGACCAAAGTGTAGTTGCCCAGTGCTGGAGCTGTGAGGGGCTCGGCGTCAGTGAAATCCTTCTTTTTTGTGAGCAACAAACGACCGATCTGAAAAATGTGCACAATCAGTTGACAGAATCAT</canonical_amplicon>
		<polymorphic_amplicon>GCCTATTTCGTGACAAAGAAGCATGCCAATTAGTGAACAAAACTACGGTTGATTGCWATGGTTGTGCGGGGAGAGCTCACGCAGTATGTTGTGGTATATGGACTGAAGACGAGTACCTGATAACACTCGACCAAAGTGTAGTTGCCCAGTGCTGGAGCTGTGAGGGGCTCGGCGTCAGTGAAATCCTTCTTTTTTGTGAGCAACAAACGACCGATCTGAAAAATGTGCACAATCAGTTGACAGAATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37654</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>750665</contig_pos>
        <strand>+</strand>
        <context>AGTACCTGAT[A/G]ACACTCGACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAGCTCACGCAGTATGTTGTGGTATATGGACTGAAGACGAGTACCTGAT</left_flank>
        <right_flank>ACACTCGACCAAAGTGTAGTTGCCCAGTGCTGGAGCTGTGAGGGGCTCGG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGATTTAAGCAAACTGACAGTGAAAGAGAAGAGATTTAACGTCAAATTCAATTCAAAATTTTTGTTCAAATTGATTCCGCTTTCACAAGTAGTTCCAGCTAGTTTGCATGTGGTGAATGGATGCGCACAAACTTTTGGCTTCAATGTTCTCAAACAATGGGCAGATGACCAGGAAACTATGGGATCGCTGCCTAAGAAAACTAGCAAACTGGAGAAGGACACTAAGAAGCAAACGGCAGAAATTGAAAAGAAAGTAGTGGAAATTTCTAACGCCTTAAAGGATTTGGATGTGATGAAAAAGGTTTACACGAAGTTCGTTGATGGAAAGACTGTAGAGTCGCGGTCCTCTAGAGATAACCTATGCGTAACGGATATTTGCCTATTTCGTGACAAAGAAGCATGCCAATTAGTGAACAAAACTACGGTTGATTGCAATGGTTGTGCGGGGAGAGCTCACGCAGTATGTTGTGGTATATGGACTGAAGACGAGTACCTGATAACACTCGACCAAAGTGTAGTTGCCCAGTGCTGGAGCTGTGAGGGGCTCGGCGTCAGTGAAATCCTTCTTTTTTGTGAGCAACAAACGACCGATCTGAAAAATGTGCACAATCAGTTGACAGAATCATTAAAGTTCGTGACACAATATTTGTATGTAATTGCTTGCATTGATTTCAGAGATGTCATTGAAACTGCTGATTATCGTGCAAATTTTTGGAAAGGAAACGGAAGTCTCCGAAAAGAATCGGAGCACAGATGGAGAAGAAATGGAGCTGATATTAGTGCGATTTTTGGAAAGGAAACGGAAGTCTCCGAAAAGAATCGGAGCACAGATGGAGAAGAAATGGAGCTGATATTAGTGCGTTCAAGCAAGATTTCACTGGAAACCACATTGCCAAGCTCCTCAAAACAGAAGCCATCGACGACTACACCTCTATTTTTGCTCCATCTCCAAAATTAGATAGCATGAAAAGTTTCTTGAAACACTTGGGCAGTGTTCAG</canonical>
            <polymorphic>AAGATTTAAGCAAACTGACAGTGAAAGAGAAGAGATTTAACGTCAAATTCAATTCAAAATTTTTGTTCAAATTGATTCCGCTTTCACAAGTAGTTCCAGCTAGTTTGCATGTGGTGAATGGATGCGCACAAACTTTTGGCTTCAATGTTCTCAAACAATGGGCAGATGACCAGGAAACTATGGGATCGCTGCCTAAGAAAACTAGCAAACTGGAGAAGGACACTAAGAAGCAAACGGCAGAAATTGAAAAGAAAGTAGTGGAAATTTCTAACGCCTTAAAGGATTTGGATGTGATGAAAAAGGTTTACACGAAGTTCGTTGATGGAAAGACTGTAGAGTCGCGGTCCTCTAGAGATAACCTATGCGTAACGGATATTTGCCTATTTCGTGACAAAGAAGCATGCCAATTAGTGAACAAAACTACGGTTGATTGCAATGGTTGTGCGGGGAGAGCTCACGCAGTATGTTGTGGTATATGGACTGAAGACGAGTACCTGATRACACTCGACCAAAGTGTAGTTGCCCAGTGCTGGAGCTGTGAGGGGCTCGGCGTCAGTGAAATCCTTCTTTTTTGTGAGCAACAAACGACCGATCTGAAAAATGTGCACAATCAGTTGACAGAATCATTAAAGTTCGTGACACAATATTTGTATGTAATTGCTTGCATTGATTTCAGAGATGTCATTGAAACTGCTGATTATCGTGCAAATTTTTGGAAAGGAAACGGAAGTCTCCGAAAAGAATCGGAGCACAGATGGAGAAGAAATGGAGCTGATATTAGTGCGATTTTTGGAAAGGAAACGGAAGTCTCCGAAAAGAATCGGAGCACAGATGGAGAAGAAATGGAGCTGATATTAGTGCGTTCAAGCAAGATTTCACTGGAAACCACATTGCCAAGCTCCTCAAAACAGAAGCCATCGACGACTACACCTCTATTTTTGCTCCATCTCCAAAATTAGATAGCATGAAAAGTTTCTTGAAACACTTGGGCAGTGTTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTGAACAAAACTACGGTTGAT</pcr_primer_p1>
		<pcr_primer_p2>CATACAAATATTGTGTCACGAACT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TAGTGAACAAAACTACGGTTGATTGCAATGGTTGTGCGGGGAGAGCTCACGCAGTATGTTGTGGTATATGGACTGAAGACGAGTACCTGATAACACTCGACCAAAGTGTAGTTGCCCAGTGCTGGAGCTGTGAGGGGCTCGGCGTCAGTGAAATCCTTCTTTTTTGTGAGCAACAAACGACCGATCTGAAAAATGTGCACAATCAGTTGACAGAATCATTAAAGTTCGTGACACAATATTTGTATG</canonical_amplicon>
		<polymorphic_amplicon>TAGTGAACAAAACTACGGTTGATTGCAATGGTTGTGCGGGGAGAGCTCACGCAGTATGTTGTGGTATATGGACTGAAGACGAGTACCTGATRACACTCGACCAAAGTGTAGTTGCCCAGTGCTGGAGCTGTGAGGGGCTCGGCGTCAGTGAAATCCTTCTTTTTTGTGAGCAACAAACGACCGATCTGAAAAATGTGCACAATCAGTTGACAGAATCATTAAAGTTCGTGACACAATATTTGTATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37655</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>751549</contig_pos>
        <strand>+</strand>
        <context>ATAAATTTTA[A/G]TAAAYTCACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTCAATCATGTTTTTATGAATTCCTAATGTTTTTTCAATAAATTTTA</left_flank>
        <right_flank>TAAACTCACAGCTTACACACAGCTCACTCACATGTTTTATAATCCATCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCACATTGCCAAGCTCCTCAAAACAGAAGCCATCGACGACTACACCTCTATTTTTGCTCCATCTCCAAAATTAGATAGCATGAAAAGTTTCTTGAAACACTTGGGCAGTGTTCAGAAACTCTGTGTAGCAAGAGACTTAACTACTGATGAGATGATCGAATTGGATGTATCCATCGTAATTATTAATTTTCAAAATATTGAAATACTAAATTTTTTGCAGAATCTGTGTTGGGAGCATTTGCAAGTATTCGCAGGAGATATGAATATGACTCCAAAATGTCATATCTTATTGGACTTCATGCCCTATGCTCGTAGGTTCGGAACACTGGGTCGAATGAGTGAACAATCAATTGAATCGTTTCATGCCCTCTTCAATCGTCTTCAAGATCGATTCAAGACAGTGCGAAACGACGTGACTAGGTACACCCACTGTTTCCGAGTCCTATTGTTTTTCAATCATGTTTTTATGAATTCCTAATGTTTTTTCAATAAATTTTAATAAACTCACAGCTTACACACAGCTCACTCACATGTTTTATAATCCATCATCGAATTGATATCCTTCCTTCGCTTCAAGCTGACGGAGCGATGTCTCGAGCCTAGAAAATCAATAAATATTGGAACATTACATATTTCAGTTACTCACCTCAAAAAAACGTCGAAAATCGAGCTTTCTTCCATTCGCTCACTTGACTCATCATTGCACGAGGCCGTTGCTTGGACTGCTCATCTTAAAAATTAACTTGAAACTTTTTTCAACTAATTTTCACTGAAAAAAAGTGGAAAAAACGAGAAAAAACGAGAAAAAACGAGCGAAAACGAAAGAAAACATCGAAAAATATTGAAAAAAATATTCGTCTTCTCGGCCTAATGCATTAAAGTATGATTGTCAGTCAACGAACTCTCAGCAGCCAATTGAGAATTTTCGAAACAATTACTGGGGCGCGCTTTCTGACCACCTCGCCTGAACCCAATTGCATCCGTCATACCTCCAAATCC</canonical>
            <polymorphic>ACCACATTGCCAAGCTCCTCAAAACAGAAGCCATCGACGACTACACCTCTATTTTTGCTCCATCTCCAAAATTAGATAGCATGAAAAGTTTCTTGAAACACTTGGGCAGTGTTCAGAAACTCTGTGTAGCAAGAGACTTAACTACTGATGAGATGATCGAATTGGATGTATCCATCGTAATTATTAATTTTCAAAATATTGAAATACTAAATTTTTTGCAGAATCTGTGTTGGGAGCATTTGCAAGTATTCGCAGGAGATATGAATATGACTCCAAAATGTCATATCTTATTGGACTTCATGCCCTATGCTCGTAGGTTCGGAACACTGGGTCGAATGAGTGAACAATCAATTGAATCGTTTCATGCCCTCTTCAATCGTCTTCAAGATCGATTCAAGACAGTGCGAAACGACGTGACTAGGTACACCCACTGTTTCCGAGTCCTATTGTTTTTCAATCATGTTTTTATGAATTCCTAATGTTTTTTCAATAAATTTTARTAAACTCACAGCTTACACACAGCTCACTCACATGTTTTATAATCCATCATCGAATTGATATCCTTCCTTCGCTTCAAGCTGACGGAGCGATGTCTCGAGCCTAGAAAATCAATAAATATTGGAACATTACATATTTCAGTTACTCACCTCAAAAAAACGTCGAAAATCGAGCTTTCTTCCATTCGCTCACTTGACTCATCATTGCACGAGGCCGTTGCTTGGACTGCTCATCTTAAAAATTAACTTGAAACTTTTTTCAACTAATTTTCACTGAAAAAAAGTGGAAAAAACGAGAAAAAACGAGAAAAAACGAGCGAAAACGAAAGAAAACATCGAAAAATATTGAAAAAAATATTCGTCTTCTCGGCCTAATGCATTAAAGTATGATTGTCAGTCAACGAACTCTCAGCAGCCAATTGAGAATTTTCGAAACAATTACTGGGGCGCGCTTTCTGACCACCTCGCCTGAACCCAATTGCATCCGTCATACCTCCAAATCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>313 236 138 137 123 46 7</canonical_bands>
                <polymorphic_bands>549 138 137 123 46 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAACGACGTGACTAGGTACA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAGGTGAGTAACTGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAACGACGTGACTAGGTACACCCACTGTTTCCGAGTCCTATTGTTTTTCAATCATGTTTTTATGAATTCCTAATGTTTTTTCAATAAATTTTAATAAACTCACAGCTTACACACAGCTCACTCACATGTTTTATAATCCATCATCGAATTGATATCCTTCCTTCGCTTCAAGCTGACGGAGCGATGTCTCGAGCCTAGAAAATCAATAAATATTGGAACATTACATATTTCAGTTACTCACCTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAAACGACGTGACTAGGTACACCCACTGTTTCCGAGTCCTATTGTTTTTCAATCATGTTTTTATGAATTCCTAATGTTTTTTCAATAAATTTTARTAAACTCACAGCTTACACACAGCTCACTCACATGTTTTATAATCCATCATCGAATTGATATCCTTCCTTCGCTTCAAGCTGACGGAGCGATGTCTCGAGCCTAGAAAATCAATAAATATTGGAACATTACATATTTCAGTTACTCACCTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37656</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>751554</contig_pos>
        <strand>+</strand>
        <context>TTTTARTAAA[C/T]TCACAGCTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATCATGTTTTTATGAATTCCTAATGTTTTTTCAATAAATTTTAATAAA</left_flank>
        <right_flank>TCACAGCTTACACACAGCTCACTCACATGTTTTATAATCCATCATCGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGCCAAGCTCCTCAAAACAGAAGCCATCGACGACTACACCTCTATTTTTGCTCCATCTCCAAAATTAGATAGCATGAAAAGTTTCTTGAAACACTTGGGCAGTGTTCAGAAACTCTGTGTAGCAAGAGACTTAACTACTGATGAGATGATCGAATTGGATGTATCCATCGTAATTATTAATTTTCAAAATATTGAAATACTAAATTTTTTGCAGAATCTGTGTTGGGAGCATTTGCAAGTATTCGCAGGAGATATGAATATGACTCCAAAATGTCATATCTTATTGGACTTCATGCCCTATGCTCGTAGGTTCGGAACACTGGGTCGAATGAGTGAACAATCAATTGAATCGTTTCATGCCCTCTTCAATCGTCTTCAAGATCGATTCAAGACAGTGCGAAACGACGTGACTAGGTACACCCACTGTTTCCGAGTCCTATTGTTTTTCAATCATGTTTTTATGAATTCCTAATGTTTTTTCAATAAATTTTAATAAACTCACAGCTTACACACAGCTCACTCACATGTTTTATAATCCATCATCGAATTGATATCCTTCCTTCGCTTCAAGCTGACGGAGCGATGTCTCGAGCCTAGAAAATCAATAAATATTGGAACATTACATATTTCAGTTACTCACCTCAAAAAAACGTCGAAAATCGAGCTTTCTTCCATTCGCTCACTTGACTCATCATTGCACGAGGCCGTTGCTTGGACTGCTCATCTTAAAAATTAACTTGAAACTTTTTTCAACTAATTTTCACTGAAAAAAAGTGGAAAAAACGAGAAAAAACGAGAAAAAACGAGCGAAAACGAAAGAAAACATCGAAAAATATTGAAAAAAATATTCGTCTTCTCGGCCTAATGCATTAAAGTATGATTGTCAGTCAACGAACTCTCAGCAGCCAATTGAGAATTTTCGAAACAATTACTGGGGCGCGCTTTCTGACCACCTCGCCTGAACCCAATTGCATCCGTCATACCTCCAAATCCATTTA</canonical>
            <polymorphic>ATTGCCAAGCTCCTCAAAACAGAAGCCATCGACGACTACACCTCTATTTTTGCTCCATCTCCAAAATTAGATAGCATGAAAAGTTTCTTGAAACACTTGGGCAGTGTTCAGAAACTCTGTGTAGCAAGAGACTTAACTACTGATGAGATGATCGAATTGGATGTATCCATCGTAATTATTAATTTTCAAAATATTGAAATACTAAATTTTTTGCAGAATCTGTGTTGGGAGCATTTGCAAGTATTCGCAGGAGATATGAATATGACTCCAAAATGTCATATCTTATTGGACTTCATGCCCTATGCTCGTAGGTTCGGAACACTGGGTCGAATGAGTGAACAATCAATTGAATCGTTTCATGCCCTCTTCAATCGTCTTCAAGATCGATTCAAGACAGTGCGAAACGACGTGACTAGGTACACCCACTGTTTCCGAGTCCTATTGTTTTTCAATCATGTTTTTATGAATTCCTAATGTTTTTTCAATAAATTTTAATAAAYTCACAGCTTACACACAGCTCACTCACATGTTTTATAATCCATCATCGAATTGATATCCTTCCTTCGCTTCAAGCTGACGGAGCGATGTCTCGAGCCTAGAAAATCAATAAATATTGGAACATTACATATTTCAGTTACTCACCTCAAAAAAACGTCGAAAATCGAGCTTTCTTCCATTCGCTCACTTGACTCATCATTGCACGAGGCCGTTGCTTGGACTGCTCATCTTAAAAATTAACTTGAAACTTTTTTCAACTAATTTTCACTGAAAAAAAGTGGAAAAAACGAGAAAAAACGAGAAAAAACGAGCGAAAACGAAAGAAAACATCGAAAAATATTGAAAAAAATATTCGTCTTCTCGGCCTAATGCATTAAAGTATGATTGTCAGTCAACGAACTCTCAGCAGCCAATTGAGAATTTTCGAAACAATTACTGGGGCGCGCTTTCTGACCACCTCGCCTGAACCCAATTGCATCCGTCATACCTCCAAATCCATTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACGACGTGACTAGGTACA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAGGTGAGTAACTGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAACGACGTGACTAGGTACACCCACTGTTTCCGAGTCCTATTGTTTTTCAATCATGTTTTTATGAATTCCTAATGTTTTTTCAATAAATTTTAATAAACTCACAGCTTACACACAGCTCACTCACATGTTTTATAATCCATCATCGAATTGATATCCTTCCTTCGCTTCAAGCTGACGGAGCGATGTCTCGAGCCTAGAAAATCAATAAATATTGGAACATTACATATTTCAGTTACTCACCTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAAACGACGTGACTAGGTACACCCACTGTTTCCGAGTCCTATTGTTTTTCAATCATGTTTTTATGAATTCCTAATGTTTTTTCAATAAATTTTAATAAAYTCACAGCTTACACACAGCTCACTCACATGTTTTATAATCCATCATCGAATTGATATCCTTCCTTCGCTTCAAGCTGACGGAGCGATGTCTCGAGCCTAGAAAATCAATAAATATTGGAACATTACATATTTCAGTTACTCACCTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37657</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>751602</contig_pos>
        <strand>+</strand>
        <context>TCCATCATCG[A/C]ATTGATATCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACTCACAGCTTACACACAGCTCACTCACATGTTTTATAATCCATCATCG</left_flank>
        <right_flank>ATTGATATCCTTCCTTCGCTTCAAGCTGACGGAGCGATGTCTCGAGCCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGCTCCATCTCCAAAATTAGATAGCATGAAAAGTTTCTTGAAACACTTGGGCAGTGTTCAGAAACTCTGTGTAGCAAGAGACTTAACTACTGATGAGATGATCGAATTGGATGTATCCATCGTAATTATTAATTTTCAAAATATTGAAATACTAAATTTTTTGCAGAATCTGTGTTGGGAGCATTTGCAAGTATTCGCAGGAGATATGAATATGACTCCAAAATGTCATATCTTATTGGACTTCATGCCCTATGCTCGTAGGTTCGGAACACTGGGTCGAATGAGTGAACAATCAATTGAATCGTTTCATGCCCTCTTCAATCGTCTTCAAGATCGATTCAAGACAGTGCGAAACGACGTGACTAGGTACACCCACTGTTTCCGAGTCCTATTGTTTTTCAATCATGTTTTTATGAATTCCTAATGTTTTTTCAATAAATTTTAATAAACTCACAGCTTACACACAGCTCACTCACATGTTTTATAATCCATCATCGAATTGATATCCTTCCTTCGCTTCAAGCTGACGGAGCGATGTCTCGAGCCTAGAAAATCAATAAATATTGGAACATTACATATTTCAGTTACTCACCTCAAAAAAACGTCGAAAATCGAGCTTTCTTCCATTCGCTCACTTGACTCATCATTGCACGAGGCCGTTGCTTGGACTGCTCATCTTAAAAATTAACTTGAAACTTTTTTCAACTAATTTTCACTGAAAAAAAGTGGAAAAAACGAGAAAAAACGAGAAAAAACGAGCGAAAACGAAAGAAAACATCGAAAAATATTGAAAAAAATATTCGTCTTCTCGGCCTAATGCATTAAAGTATGATTGTCAGTCAACGAACTCTCAGCAGCCAATTGAGAATTTTCGAAACAATTACTGGGGCGCGCTTTCTGACCACCTCGCCTGAACCCAATTGCATCCGTCATACCTCCAAATCCATTTATTAAATCTGTGTCAGTTTTTTATAATCTCTTCCCTAGTTTGTATTCAG</canonical>
            <polymorphic>TTTGCTCCATCTCCAAAATTAGATAGCATGAAAAGTTTCTTGAAACACTTGGGCAGTGTTCAGAAACTCTGTGTAGCAAGAGACTTAACTACTGATGAGATGATCGAATTGGATGTATCCATCGTAATTATTAATTTTCAAAATATTGAAATACTAAATTTTTTGCAGAATCTGTGTTGGGAGCATTTGCAAGTATTCGCAGGAGATATGAATATGACTCCAAAATGTCATATCTTATTGGACTTCATGCCCTATGCTCGTAGGTTCGGAACACTGGGTCGAATGAGTGAACAATCAATTGAATCGTTTCATGCCCTCTTCAATCGTCTTCAAGATCGATTCAAGACAGTGCGAAACGACGTGACTAGGTACACCCACTGTTTCCGAGTCCTATTGTTTTTCAATCATGTTTTTATGAATTCCTAATGTTTTTTCAATAAATTTTAATAAACTCACAGCTTACACACAGCTCACTCACATGTTTTATAATCCATCATCGMATTGATATCCTTCCTTCGCTTCAAGCTGACGGAGCGATGTCTCGAGCCTAGAAAATCAATAAATATTGGAACATTACATATTTCAGTTACTCACCTCAAAAAAACGTCGAAAATCGAGCTTTCTTCCATTCGCTCACTTGACTCATCATTGCACGAGGCCGTTGCTTGGACTGCTCATCTTAAAAATTAACTTGAAACTTTTTTCAACTAATTTTCACTGAAAAAAAGTGGAAAAAACGAGAAAAAACGAGAAAAAACGAGCGAAAACGAAAGAAAACATCGAAAAATATTGAAAAAAATATTCGTCTTCTCGGCCTAATGCATTAAAGTATGATTGTCAGTCAACGAACTCTCAGCAGCCAATTGAGAATTTTCGAAACAATTACTGGGGCGCGCTTTCTGACCACCTCGCCTGAACCCAATTGCATCCGTCATACCTCCAAATCCATTTATTAAATCTGTGTCAGTTTTTTATAATCTCTTCCCTAGTTTGTATTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>175 166 161 125 105 94 65 57 45 7</canonical_bands>
                <polymorphic_bands>206 175 166 125 105 94 65 57 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>185 152 140 121 90 80 60 40 25 24 22 19 16 12 7 7</canonical_bands>
                <polymorphic_bands>245 152 140 121 90 80 40 25 24 22 19 16 12 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAACGACGTGACTAGGTACA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAGGTGAGTAACTGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAACGACGTGACTAGGTACACCCACTGTTTCCGAGTCCTATTGTTTTTCAATCATGTTTTTATGAATTCCTAATGTTTTTTCAATAAATTTTAATAAACTCACAGCTTACACACAGCTCACTCACATGTTTTATAATCCATCATCGAATTGATATCCTTCCTTCGCTTCAAGCTGACGGAGCGATGTCTCGAGCCTAGAAAATCAATAAATATTGGAACATTACATATTTCAGTTACTCACCTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAAACGACGTGACTAGGTACACCCACTGTTTCCGAGTCCTATTGTTTTTCAATCATGTTTTTATGAATTCCTAATGTTTTTTCAATAAATTTTAATAAACTCACAGCTTACACACAGCTCACTCACATGTTTTATAATCCATCATCGMATTGATATCCTTCCTTCGCTTCAAGCTGACGGAGCGATGTCTCGAGCCTAGAAAATCAATAAATATTGGAACATTACATATTTCAGTTACTCACCTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37658</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>751731</contig_pos>
        <strand>+</strand>
        <context>CTTTCTTCCA[C/T]TCGCTCACTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTTCAGTTACTCACCTCAAAAAAACGTCGAAAATCGAGCTTTCTTCCA</left_flank>
        <right_flank>TCGCTCACTTGACTCATCATTGCACGAGGCCGTTGCTTGGACTGCTCATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAATTTTCAAAATATTGAAATACTAAATTTTTTGCAGAATCTGTGTTGGGAGCATTTGCAAGTATTCGCAGGAGATATGAATATGACTCCAAAATGTCATATCTTATTGGACTTCATGCCCTATGCTCGTAGGTTCGGAACACTGGGTCGAATGAGTGAACAATCAATTGAATCGTTTCATGCCCTCTTCAATCGTCTTCAAGATCGATTCAAGACAGTGCGAAACGACGTGACTAGGTACACCCACTGTTTCCGAGTCCTATTGTTTTTCAATCATGTTTTTATGAATTCCTAATGTTTTTTCAATAAATTTTAATAAACTCACAGCTTACACACAGCTCACTCACATGTTTTATAATCCATCATCGAATTGATATCCTTCCTTCGCTTCAAGCTGACGGAGCGATGTCTCGAGCCTAGAAAATCAATAAATATTGGAACATTACATATTTCAGTTACTCACCTCAAAAAAACGTCGAAAATCGAGCTTTCTTCCATTCGCTCACTTGACTCATCATTGCACGAGGCCGTTGCTTGGACTGCTCATCTTAAAAATTAACTTGAAACTTTTTTCAACTAATTTTCACTGAAAAAAAGTGGAAAAAACGAGAAAAAACGAGAAAAAACGAGCGAAAACGAAAGAAAACATCGAAAAATATTGAAAAAAATATTCGTCTTCTCGGCCTAATGCATTAAAGTATGATTGTCAGTCAACGAACTCTCAGCAGCCAATTGAGAATTTTCGAAACAATTACTGGGGCGCGCTTTCTGACCACCTCGCCTGAACCCAATTGCATCCGTCATACCTCCAAATCCATTTATTAAATCTGTGTCAGTTTTTTATAATCTCTTCCCTAGTTTGTATTCAGGTATAGCTCAAATGAATTCCCAAAAAAAACATATTACGTCTGGAGCATACTTGTGGAAAAGATGGCCGGCCCGCGGGCCTGGCCGGGCCGGGCCGCTTTTTGAAAATTTCGAAATTTTAGAGCAAATCA</canonical>
            <polymorphic>ATTAATTTTCAAAATATTGAAATACTAAATTTTTTGCAGAATCTGTGTTGGGAGCATTTGCAAGTATTCGCAGGAGATATGAATATGACTCCAAAATGTCATATCTTATTGGACTTCATGCCCTATGCTCGTAGGTTCGGAACACTGGGTCGAATGAGTGAACAATCAATTGAATCGTTTCATGCCCTCTTCAATCGTCTTCAAGATCGATTCAAGACAGTGCGAAACGACGTGACTAGGTACACCCACTGTTTCCGAGTCCTATTGTTTTTCAATCATGTTTTTATGAATTCCTAATGTTTTTTCAATAAATTTTAATAAACTCACAGCTTACACACAGCTCACTCACATGTTTTATAATCCATCATCGAATTGATATCCTTCCTTCGCTTCAAGCTGACGGAGCGATGTCTCGAGCCTAGAAAATCAATAAATATTGGAACATTACATATTTCAGTTACTCACCTCAAAAAAACGTCGAAAATCGAGCTTTCTTCCAYTCGCTCACTTGACTCATCATTGCACGAGGCCGTTGCTTGGACTGCTCATCTTAAAAATTAACTTGAAACTTTTTTCAACTAATTTTCACTGAAAAAAAGTGGAAAAAACGAGAAAAAACGAGAAAAAACGAGCGAAAACGAAAGAAAACATCGAAAAATATTGAAAAAAATATTCGTCTTCTCGGCCTAATGCATTAAAGTATGATTGTCAGTCAACGAACTCTCAGCAGCCAATTGAGAATTTTCGAAACAATTACTGGGGCGCGCTTTCTGACCACCTCGCCTGAACCCAATTGCATCCGTCATACCTCCAAATCCATTTATTAAATCTGTGTCAGTTTTTTATAATCTCTTCCCTAGTTTGTATTCAGGTATAGCTCAAATGAATTCCCAAAAAAAACATATTACGTCTGGAGCATACTTGTGGAAAAGATGGCCGGCCCGCGGGCCTGGCCGGGCCGGGCCGCTTTTTGAAAATTTCGAAATTTTAGAGCAAATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGAGCCTAGAAAATCAATAA</pcr_primer_p1>
		<pcr_primer_p2>CAATATTTTTCGATGTTTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTCGAGCCTAGAAAATCAATAAATATTGGAACATTACATATTTCAGTTACTCACCTCAAAAAAACGTCGAAAATCGAGCTTTCTTCCATTCGCTCACTTGACTCATCATTGCACGAGGCCGTTGCTTGGACTGCTCATCTTAAAAATTAACTTGAAACTTTTTTCAACTAATTTTCACTGAAAAAAAGTGGAAAAAACGAGAAAAAACGAGAAAAAACGAGCGAAAACGAAAGAAAACATCGAAAAATATTG</canonical_amplicon>
		<polymorphic_amplicon>CTCGAGCCTAGAAAATCAATAAATATTGGAACATTACATATTTCAGTTACTCACCTCAAAAAAACGTCGAAAATCGAGCTTTCTTCCAYTCGCTCACTTGACTCATCATTGCACGAGGCCGTTGCTTGGACTGCTCATCTTAAAAATTAACTTGAAACTTTTTTCAACTAATTTTCACTGAAAAAAAGTGGAAAAAACGAGAAAAAACGAGAAAAAACGAGCGAAAACGAAAGAAAACATCGAAAAATATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37659</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>751780</contig_pos>
        <strand>+</strand>
        <context>GGACTGCTCA[C/T]CTTAAAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCGCTCACTTGACTCATCATTGCACGAGGCCGTTGCTTGGACTGCTCA</left_flank>
        <right_flank>CTTAAAAATTAACTTGAAACTTTTTTCAACTAATTTTCACTGAAAAAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGAGCATTTGCAAGTATTCGCAGGAGATATGAATATGACTCCAAAATGTCATATCTTATTGGACTTCATGCCCTATGCTCGTAGGTTCGGAACACTGGGTCGAATGAGTGAACAATCAATTGAATCGTTTCATGCCCTCTTCAATCGTCTTCAAGATCGATTCAAGACAGTGCGAAACGACGTGACTAGGTACACCCACTGTTTCCGAGTCCTATTGTTTTTCAATCATGTTTTTATGAATTCCTAATGTTTTTTCAATAAATTTTAATAAACTCACAGCTTACACACAGCTCACTCACATGTTTTATAATCCATCATCGAATTGATATCCTTCCTTCGCTTCAAGCTGACGGAGCGATGTCTCGAGCCTAGAAAATCAATAAATATTGGAACATTACATATTTCAGTTACTCACCTCAAAAAAACGTCGAAAATCGAGCTTTCTTCCATTCGCTCACTTGACTCATCATTGCACGAGGCCGTTGCTTGGACTGCTCATCTTAAAAATTAACTTGAAACTTTTTTCAACTAATTTTCACTGAAAAAAAGTGGAAAAAACGAGAAAAAACGAGAAAAAACGAGCGAAAACGAAAGAAAACATCGAAAAATATTGAAAAAAATATTCGTCTTCTCGGCCTAATGCATTAAAGTATGATTGTCAGTCAACGAACTCTCAGCAGCCAATTGAGAATTTTCGAAACAATTACTGGGGCGCGCTTTCTGACCACCTCGCCTGAACCCAATTGCATCCGTCATACCTCCAAATCCATTTATTAAATCTGTGTCAGTTTTTTATAATCTCTTCCCTAGTTTGTATTCAGGTATAGCTCAAATGAATTCCCAAAAAAAACATATTACGTCTGGAGCATACTTGTGGAAAAGATGGCCGGCCCGCGGGCCTGGCCGGGCCGGGCCGCTTTTTGAAAATTTCGAAATTTTAGAGCAAATCATCATTTTTCAAGATTGTTTTTCTTCTAAATAATTGAAAATCAACACTAG</canonical>
            <polymorphic>GGGAGCATTTGCAAGTATTCGCAGGAGATATGAATATGACTCCAAAATGTCATATCTTATTGGACTTCATGCCCTATGCTCGTAGGTTCGGAACACTGGGTCGAATGAGTGAACAATCAATTGAATCGTTTCATGCCCTCTTCAATCGTCTTCAAGATCGATTCAAGACAGTGCGAAACGACGTGACTAGGTACACCCACTGTTTCCGAGTCCTATTGTTTTTCAATCATGTTTTTATGAATTCCTAATGTTTTTTCAATAAATTTTAATAAACTCACAGCTTACACACAGCTCACTCACATGTTTTATAATCCATCATCGAATTGATATCCTTCCTTCGCTTCAAGCTGACGGAGCGATGTCTCGAGCCTAGAAAATCAATAAATATTGGAACATTACATATTTCAGTTACTCACCTCAAAAAAACGTCGAAAATCGAGCTTTCTTCCATTCGCTCACTTGACTCATCATTGCACGAGGCCGTTGCTTGGACTGCTCAYCTTAAAAATTAACTTGAAACTTTTTTCAACTAATTTTCACTGAAAAAAAGTGGAAAAAACGAGAAAAAACGAGAAAAAACGAGCGAAAACGAAAGAAAACATCGAAAAATATTGAAAAAAATATTCGTCTTCTCGGCCTAATGCATTAAAGTATGATTGTCAGTCAACGAACTCTCAGCAGCCAATTGAGAATTTTCGAAACAATTACTGGGGCGCGCTTTCTGACCACCTCGCCTGAACCCAATTGCATCCGTCATACCTCCAAATCCATTTATTAAATCTGTGTCAGTTTTTTATAATCTCTTCCCTAGTTTGTATTCAGGTATAGCTCAAATGAATTCCCAAAAAAAACATATTACGTCTGGAGCATACTTGTGGAAAAGATGGCCGGCCCGCGGGCCTGGCCGGGCCGGGCCGCTTTTTGAAAATTTCGAAATTTTAGAGCAAATCATCATTTTTCAAGATTGTTTTTCTTCTAAATAATTGAAAATCAACACTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGAGCCTAGAAAATCAATAA</pcr_primer_p1>
		<pcr_primer_p2>CAATATTTTTCGATGTTTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTCGAGCCTAGAAAATCAATAAATATTGGAACATTACATATTTCAGTTACTCACCTCAAAAAAACGTCGAAAATCGAGCTTTCTTCCATTCGCTCACTTGACTCATCATTGCACGAGGCCGTTGCTTGGACTGCTCATCTTAAAAATTAACTTGAAACTTTTTTCAACTAATTTTCACTGAAAAAAAGTGGAAAAAACGAGAAAAAACGAGAAAAAACGAGCGAAAACGAAAGAAAACATCGAAAAATATTG</canonical_amplicon>
		<polymorphic_amplicon>CTCGAGCCTAGAAAATCAATAAATATTGGAACATTACATATTTCAGTTACTCACCTCAAAAAAACGTCGAAAATCGAGCTTTCTTCCATTCGCTCACTTGACTCATCATTGCACGAGGCCGTTGCTTGGACTGCTCAYCTTAAAAATTAACTTGAAACTTTTTTCAACTAATTTTCACTGAAAAAAAGTGGAAAAAACGAGAAAAAACGAGAAAAAACGAGCGAAAACGAAAGAAAACATCGAAAAATATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37660</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>752026</contig_pos>
        <strand>+</strand>
        <context>TGAACCCAAT[G/T]GCATCCGTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGAAACAATTACTGGGGCGCGCTTTCTGACCACCTCGCCTGAACCCAAT</left_flank>
        <right_flank>GCATCCGTCATACCTCCAAATCCATTTATTAAATCTGTGTCAGTTTTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGTTTTTTCAATAAATTTTAATAAACTCACAGCTTACACACAGCTCACTCACATGTTTTATAATCCATCATCGAATTGATATCCTTCCTTCGCTTCAAGCTGACGGAGCGATGTCTCGAGCCTAGAAAATCAATAAATATTGGAACATTACATATTTCAGTTACTCACCTCAAAAAAACGTCGAAAATCGAGCTTTCTTCCATTCGCTCACTTGACTCATCATTGCACGAGGCCGTTGCTTGGACTGCTCATCTTAAAAATTAACTTGAAACTTTTTTCAACTAATTTTCACTGAAAAAAAGTGGAAAAAACGAGAAAAAACGAGAAAAAACGAGCGAAAACGAAAGAAAACATCGAAAAATATTGAAAAAAATATTCGTCTTCTCGGCCTAATGCATTAAAGTATGATTGTCAGTCAACGAACTCTCAGCAGCCAATTGAGAATTTTCGAAACAATTACTGGGGCGCGCTTTCTGACCACCTCGCCTGAACCCAATTGCATCCGTCATACCTCCAAATCCATTTATTAAATCTGTGTCAGTTTTTTATAATCTCTTCCCTAGTTTGTATTCAGGTATAGCTCAAATGAATTCCCAAAAAAAACATATTACGTCTGGAGCATACTTGTGGAAAAGATGGCCGGCCCGCGGGCCTGGCCGGGCCGGGCCGCTTTTTGAAAATTTCGAAATTTTAGAGCAAATCATCATTTTTCAAGATTGTTTTTCTTCTAAATAATTGAAAATCAACACTAGAGGCTGATTCTGTCAAAAAAAACTGTTTTGAGGTCGTAATTAGAAAAAAAGTTTCATCCTTGATTTAATAAAATTTGATTTTTTTGCTAAAAATTCAATTAAATTGACTTTTTCGGATGGTAGTATGCATTGGAGTAATATTTGTGCTATTACAAATATTTTGGCACATTTGAGAAGTAACATTTTCGAAAAGTTATTTTAGGCAGGCAGAGCGGGCCGGGGCCATCACCATGTATCGTCTGGAGT</canonical>
            <polymorphic>AATGTTTTTTCAATAAATTTTAATAAACTCACAGCTTACACACAGCTCACTCACATGTTTTATAATCCATCATCGAATTGATATCCTTCCTTCGCTTCAAGCTGACGGAGCGATGTCTCGAGCCTAGAAAATCAATAAATATTGGAACATTACATATTTCAGTTACTCACCTCAAAAAAACGTCGAAAATCGAGCTTTCTTCCATTCGCTCACTTGACTCATCATTGCACGAGGCCGTTGCTTGGACTGCTCATCTTAAAAATTAACTTGAAACTTTTTTCAACTAATTTTCACTGAAAAAAAGTGGAAAAAACGAGAAAAAACGAGAAAAAACGAGCGAAAACGAAAGAAAACATCGAAAAATATTGAAAAAAATATTCGTCTTCTCGGCCTAATGCATTAAAGTATGATTGTCAGTCAACGAACTCTCAGCAGCCAATTGAGAATTTTCGAAACAATTACTGGGGCGCGCTTTCTGACCACCTCGCCTGAACCCAATKGCATCCGTCATACCTCCAAATCCATTTATTAAATCTGTGTCAGTTTTTTATAATCTCTTCCCTAGTTTGTATTCAGGTATAGCTCAAATGAATTCCCAAAAAAAACATATTACGTCTGGAGCATACTTGTGGAAAAGATGGCCGGCCCGCGGGCCTGGCCGGGCCGGGCCGCTTTTTGAAAATTTCGAAATTTTAGAGCAAATCATCATTTTTCAAGATTGTTTTTCTTCTAAATAATTGAAAATCAACACTAGAGGCTGATTCTGTCAAAAAAAACTGTTTTGAGGTCGTAATTAGAAAAAAAGTTTCATCCTTGATTTAATAAAATTTGATTTTTTTGCTAAAAATTCAATTAAATTGACTTTTTCGGATGGTAGTATGCATTGGAGTAATATTTGTGCTATTACAAATATTTTGGCACATTTGAGAAGTAACATTTTCGAAAAGTTATTTTAGGCAGGCAGAGCGGGCCGGGGCCATCACCATGTATCGTCTGGAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>380 227 170 119 104</canonical_bands>
                <polymorphic_bands>484 227 170 119</polymorphic_bands>
            </assay>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>504 437 59</canonical_bands>
                <polymorphic_bands>563 437</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>185 152 145 94 90 60 56 47 40 34 25 20 15 12 8 7 5 5</canonical_bands>
                <polymorphic_bands>185 152 145 134 90 60 56 47 34 25 20 15 12 8 7 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAACATCGAAAAATATTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TGGGAATTCATTTGAGCTATAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAAACATCGAAAAATATTGAAAAAAATATTCGTCTTCTCGGCCTAATGCATTAAAGTATGATTGTCAGTCAACGAACTCTCAGCAGCCAATTGAGAATTTTCGAAACAATTACTGGGGCGCGCTTTCTGACCACCTCGCCTGAACCCAATTGCATCCGTCATACCTCCAAATCCATTTATTAAATCTGTGTCAGTTTTTTATAATCTCTTCCCTAGTTTGTATTCAGGTATAGCTCAAATGAATTCCCA</canonical_amplicon>
		<polymorphic_amplicon>GAAAACATCGAAAAATATTGAAAAAAATATTCGTCTTCTCGGCCTAATGCATTAAAGTATGATTGTCAGTCAACGAACTCTCAGCAGCCAATTGAGAATTTTCGAAACAATTACTGGGGCGCGCTTTCTGACCACCTCGCCTGAACCCAATKGCATCCGTCATACCTCCAAATCCATTTATTAAATCTGTGTCAGTTTTTTATAATCTCTTCCCTAGTTTGTATTCAGGTATAGCTCAAATGAATTCCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37661</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>774802</contig_pos>
        <strand>+</strand>
        <context>AACCGGAAAA[C/T]GAAACGAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTGAATATGAAGTTCTTCAGAATGAAGTTTCTGTTTGAAAACCGGAAAA</left_flank>
        <right_flank>GAAACGAAAGAAATATGGAGAAAGGCAAGAAGGATGGTGCTTGAAAAGGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCTCAAAGTAGAAAGTTTGTGACCCTTCTATTACAGGTTTCATGGTAAGCTAAACTTTGGAGCAAAATAGTAAAATTTTTCTGAGAGAAGTTCAGAAGACATGAAATTCCGATTCGGTACAAACTTAAACTTTAAATGGATTTATAAATTTTCGATTTCATATGATTGAGATCATCAAGAAAACAATTTTTGAACATTACTTCGAGTTTTGGCAACACCGCAAATGTTCTAAAAGACGCAGCTGGTTTCAGAAGCTATACTGAAATCACCTGCACTAATAAATAGGAACAAAGTTTCGAAACTCATTGAAAAAGCGAAAAATCCCAATAACATTCACAAAAAAAGTTTTACGTATAGAATTTCAAGAACTACTGTTCAACTCAAAAAGAAAATCTTGTAGAAAAATGAAGCAGAAAAAGAGGAAAATGCAACAATCTTGAATATATGTGTGAATATGAAGTTCTTCAGAATGAAGTTTCTGTTTGAAAACCGGAAAATGAAACGAAAGAAATATGGAGAAAGGCAAGAAGGATGGTGCTTGAAAAGGTTACACTTTTGACGGGAGGAGGACGATGCATAAATCAAATTTGTTCTAAGTATATCTACGTATTTCTTTCATTTTCTTTCATTTTCATCCATGACAACATCCTCGAGACAGGCACAGTGCCGATTGAAAAACGACCGAAAATGCGGGACACGGGTGTGAAAAAGGATAGAAACAAAAAAAAGCGAGGTGGATCGAATCCCAAGATACCTCATCTTCTTGTTCAAACCGCCTGTTTTCTATATGTGTATTTTTCTGGGACGAATGGATGGTTGGCGCGGATGAAGAAGAATAAGAAGAAGAGGATTCTATTCATATTCTTGTTCATCTTCAAATCAATATGAATATAAATCGAAGGCATTGGCCCTTGTTGTAGAGGGGACGTCCAAAAAACTCTAGCGGGAAATAAGAGTGGATAAGAAAGTAACGGACATCTGGATGAGGCAACTTATAG</canonical>
            <polymorphic>TGGCTCAAAGTAGAAAGTTTGTGACCCTTCTATTACAGGTTTCATGGTAAGCTAAACTTTGGAGCAAAATAGTAAAATTTTTCTGAGAGAAGTTCAGAAGACATGAAATTCCGATTCGGTACAAACTTAAACTTTAAATGGATTTATAAATTTTCGATTTCATATGATTGAGATCATCAAGAAAACAATTTTTGAACATTACTTCGAGTTTTGGCAACACCGCAAATGTTCTAAAAGACGCAGCTGGTTTCAGAAGCTATACTGAAATCACCTGCACTAATAAATAGGAACAAAGTTTCGAAACTCATTGAAAAAGCGAAAAATCCCAATAACATTCACAAAAAAAGTTTTACGTATAGAATTTCAAGAACTACTGTTCAACTCAAAAAGAAAATCTTGTAGAAAAATGAAGCAGAAAAAGAGGAAAATGCAACAATCTTGAATATATGTGTGAATATGAAGTTCTTCAGAATGAAGTTTCTGTTTGAAAACCGGAAAAYGAAACGAAAGAAATATGGAGAAAGGCAAGAAGGATGGTGCTTGAAAAGGTTACACTTTTGACGGGAGGAGGACGATGCATAAATCAAATTTGTTCTAAGTATATCTACGTATTTCTTTCATTTTCTTTCATTTTCATCCATGACAACATCCTCGAGACAGGCACAGTGCCGATTGAAAAACGACCGAAAATGCGGGACACGGGTGTGAAAAAGGATAGAAACAAAAAAAAGCGAGGTGGATCGAATCCCAAGATACCTCATCTTCTTGTTCAAACCGCCTGTTTTCTATATGTGTATTTTTCTGGGACGAATGGATGGTTGGCGCGGATGAAGAAGAATAAGAAGAAGAGGATTCTATTCATATTCTTGTTCATCTTCAAATCAATATGAATATAAATCGAAGGCATTGGCCCTTGTTGTAGAGGGGACGTCCAAAAAACTCTAGCGGGAAATAAGAGTGGATAAGAAAGTAACGGACATCTGGATGAGGCAACTTATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGTAGAAAAATGAAGCAGAAA</pcr_primer_p1>
		<pcr_primer_p2>GATGAAAATGAAAGAAAATGAAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTTGTAGAAAAATGAAGCAGAAAAAGAGGAAAATGCAACAATCTTGAATATATGTGTGAATATGAAGTTCTTCAGAATGAAGTTTCTGTTTGAAAACCGGAAAATGAAACGAAAGAAATATGGAGAAAGGCAAGAAGGATGGTGCTTGAAAAGGTTACACTTTTGACGGGAGGAGGACGATGCATAAATCAAATTTGTTCTAAGTATATCTACGTATTTCTTTCATTTTCTTTCATTTTCATC</canonical_amplicon>
		<polymorphic_amplicon>CTTGTAGAAAAATGAAGCAGAAAAAGAGGAAAATGCAACAATCTTGAATATATGTGTGAATATGAAGTTCTTCAGAATGAAGTTTCTGTTTGAAAACCGGAAAAYGAAACGAAAGAAATATGGAGAAAGGCAAGAAGGATGGTGCTTGAAAAGGTTACACTTTTGACGGGAGGAGGACGATGCATAAATCAAATTTGTTCTAAGTATATCTACGTATTTCTTTCATTTTCTTTCATTTTCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37662</snp_id>
        <super_contig>c012401175.Contig1</super_contig>
        <contig_pos>775313</contig_pos>
        <strand>+</strand>
        <context>AGAATGAGAG[A/G]AAATGTGTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATAAGAAAGTAACGGACATCTGGATGAGGCAACTTATAGAGAATGAGAG</left_flank>
        <right_flank>AAATGTGTATTGTATAATACAAGTTGTTGTAAAGCGGGTCGGGAAGAACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATGGAGAAAGGCAAGAAGGATGGTGCTTGAAAAGGTTACACTTTTGACGGGAGGAGGACGATGCATAAATCAAATTTGTTCTAAGTATATCTACGTATTTCTTTCATTTTCTTTCATTTTCATCCATGACAACATCCTCGAGACAGGCACAGTGCCGATTGAAAAACGACCGAAAATGCGGGACACGGGTGTGAAAAAGGATAGAAACAAAAAAAAGCGAGGTGGATCGAATCCCAAGATACCTCATCTTCTTGTTCAAACCGCCTGTTTTCTATATGTGTATTTTTCTGGGACGAATGGATGGTTGGCGCGGATGAAGAAGAATAAGAAGAAGAGGATTCTATTCATATTCTTGTTCATCTTCAAATCAATATGAATATAAATCGAAGGCATTGGCCCTTGTTGTAGAGGGGACGTCCAAAAAACTCTAGCGGGAAATAAGAGTGGATAAGAAAGTAACGGACATCTGGATGAGGCAACTTATAGAGAATGAGAGGAAATGTGTATTGTATAATACAAGTTGTTGTAAAGCGGGTCGGGAAGAACACACATACTCCTTGAATGCCGAATACTCTTTAATTCGGAACCCAAATACTTTTTCCTTTCTCGGGTTGGGAAGAGGAGGTGAGCACCCCAGAAACACAATAGAAGACGCTTGGGAGAGGATTAGGCTCGTCTCGGGGCGGAAAAAGAAAAGAGAAAGAGAGAAACAAGCTCTTTGTATTGTAAAGGGCGCGGCGGCAGGGTCGAACACTTTCCGGAAACTTCCTGATCATCGTGTCATGTGCATTTTATGAGGTATAGGGTGAAAAGGAGGAATCAATGAGCAATGTAGGTAGTGAATCAAAAGAGCATGGTAGAAAAAAGATTGTAGTTGGGACGGAGAATGGTTTTTCGAATGAAAGTTATTATTCTGATGCAAAAAATTGGAGCTGTGGAGAAGAGAAGCTTGTGAGCGTGGTCAACGGTCCCCACAAAGCAAACCACCATAACCTGA</canonical>
            <polymorphic>AATATGGAGAAAGGCAAGAAGGATGGTGCTTGAAAAGGTTACACTTTTGACGGGAGGAGGACGATGCATAAATCAAATTTGTTCTAAGTATATCTACGTATTTCTTTCATTTTCTTTCATTTTCATCCATGACAACATCCTCGAGACAGGCACAGTGCCGATTGAAAAACGACCGAAAATGCGGGACACGGGTGTGAAAAAGGATAGAAACAAAAAAAAGCGAGGTGGATCGAATCCCAAGATACCTCATCTTCTTGTTCAAACCGCCTGTTTTCTATATGTGTATTTTTCTGGGACGAATGGATGGTTGGCGCGGATGAAGAAGAATAAGAAGAAGAGGATTCTATTCATATTCTTGTTCATCTTCAAATCAATATGAATATAAATCGAAGGCATTGGCCCTTGTTGTAGAGGGGACGTCCAAAAAACTCTAGCGGGAAATAAGAGTGGATAAGAAAGTAACGGACATCTGGATGAGGCAACTTATAGAGAATGAGAGRAAATGTGTATTGTATAATACAAGTTGTTGTAAAGCGGGTCGGGAAGAACACACATACTCCTTGAATGCCGAATACTCTTTAATTCGGAACCCAAATACTTTTTCCTTTCTCGGGTTGGGAAGAGGAGGTGAGCACCCCAGAAACACAATAGAAGACGCTTGGGAGAGGATTAGGCTCGTCTCGGGGCGGAAAAAGAAAAGAGAAAGAGAGAAACAAGCTCTTTGTATTGTAAAGGGCGCGGCGGCAGGGTCGAACACTTTCCGGAAACTTCCTGATCATCGTGTCATGTGCATTTTATGAGGTATAGGGTGAAAAGGAGGAATCAATGAGCAATGTAGGTAGTGAATCAAAAGAGCATGGTAGAAAAAAGATTGTAGTTGGGACGGAGAATGGTTTTTCGAATGAAAGTTATTATTCTGATGCAAAAAATTGGAGCTGTGGAGAAGAGAAGCTTGTGAGCGTGGTCAACGGTCCCCACAAAGCAAACCACCATAACCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGAAGAATAAGAAGAAGAGGA</pcr_primer_p1>
		<pcr_primer_p2>CATTCAAGGAGTATGTGTGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAAGAAGAATAAGAAGAAGAGGATTCTATTCATATTCTTGTTCATCTTCAAATCAATATGAATATAAATCGAAGGCATTGGCCCTTGTTGTAGAGGGGACGTCCAAAAAACTCTAGCGGGAAATAAGAGTGGATAAGAAAGTAACGGACATCTGGATGAGGCAACTTATAGAGAATGAGAGGAAATGTGTATTGTATAATACAAGTTGTTGTAAAGCGGGTCGGGAAGAACACACATACTCCTTGAATG</canonical_amplicon>
		<polymorphic_amplicon>TGAAGAAGAATAAGAAGAAGAGGATTCTATTCATATTCTTGTTCATCTTCAAATCAATATGAATATAAATCGAAGGCATTGGCCCTTGTTGTAGAGGGGACGTCCAAAAAACTCTAGCGGGAAATAAGAGTGGATAAGAAAGTAACGGACATCTGGATGAGGCAACTTATAGAGAATGAGAGRAAATGTGTATTGTATAATACAAGTTGTTGTAAAGCGGGTCGGGAAGAACACACATACTCCTTGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37663</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>9666</contig_pos>
        <strand>+</strand>
        <context>AGATTYTATC[G/T]TATTCTATCT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATC</left_flank>
        <right_flank>TATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAGCCGAATTTCATGACAAATTTGACCATTTCCAGCCAATTTTCCAATGAAAATCGATATTTTATTCACCCAGTTGGGACACGTGTTCCAATCAAGTTGACAACGACGTTCGAGTACTTGACGACCTGAAAAATGGTAAATTTGAGCTTTGAGAACGATTTTTTTCAGTCGGAACTCGATTTCGGCGATTTTAAGCTCTGAAAATGACTAAAAGCCCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTC</canonical>
            <polymorphic>TTTCAGCCGAATTTCATGACAAATTTGACCATTTCCAGCCAATTTTCCAATGAAAATCGATATTTTATTCACCCAGTTGGGACACGTGTTCCAATCAAGTTGACAACGACGTTCGAGTACTTGACGACCTGAAAAATGGTAAATTTGAGCTTTGAGAACGATTTTTTTCAGTCGGAACTCGATTTCGGCGATTTTAAGCTCTGAAAATGACTAAAAGCCCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCKTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATTTTCACTGTAATTTGAGCTA</pcr_primer_p1>
		<pcr_primer_p2>GAAAATCGCACTAAAAATTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTC</canonical_amplicon>
		<polymorphic_amplicon>ACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCKTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37664</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>9682</contig_pos>
        <strand>+</strand>
        <context>TATCTTTTCT[A/T]RWTTTTACAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCT</left_flank>
        <right_flank>ATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACAAATTTGACCATTTCCAGCCAATTTTCCAATGAAAATCGATATTTTATTCACCCAGTTGGGACACGTGTTCCAATCAAGTTGACAACGACGTTCGAGTACTTGACGACCTGAAAAATGGTAAATTTGAGCTTTGAGAACGATTTTTTTCAGTCGGAACTCGATTTCGGCGATTTTAAGCTCTGAAAATGACTAAAAGCCCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATTTGAAGCGA</canonical>
            <polymorphic>TGACAAATTTGACCATTTCCAGCCAATTTTCCAATGAAAATCGATATTTTATTCACCCAGTTGGGACACGTGTTCCAATCAAGTTGACAACGACGTTCGAGTACTTGACGACCTGAAAAATGGTAAATTTGAGCTTTGAGAACGATTTTTTTCAGTCGGAACTCGATTTCGGCGATTTTAAGCTCTGAAAATGACTAAAAGCCCCATTTTTAAAGCAATTTTTGGTTTTTTAGGAACTTTTGGAGTCAAAAATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTWATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATTTGAAGCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATTTTCACTGTAATTTGAGCTA</pcr_primer_p1>
		<pcr_primer_p2>GAAAATCGCACTAAAAATTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTC</canonical_amplicon>
		<polymorphic_amplicon>ACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTWATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37665</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>9933</contig_pos>
        <strand>+</strand>
        <context>TTTTCAGCTC[C/T]CCTTGCGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTC</left_flank>
        <right_flank>CCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATTTGAAGCGATTTTAACCCATTTTTCAGCAATTTCTGACTATTCTGAGTGAAAATCCGGTCATTTTTTGAAAAAAAAATTTTTTGACGTAAACCTCAAATTTTCGGCTGAAATAGTTGATTTTAGAGGTTTTAGAGGCATTTTTCTAGCTTTTTAGACCCAGAAAACCGTTTAAAAACACCCCAAACCCATAGGAAAACCCTTTTTTCGAATTTTTTTCAAAATTTAGGTTTTTTTTCAGATTTTTTCAATTTTTTCCGAA</canonical>
            <polymorphic>ATCTATCATTTCCAGCGATTTCAGGTTCCAAAAAATGCTGAAAATCTGATTTTCAGTTAGAAATTGGGCGTTTTTGAGCGATTTCTGACCGAAAGTTGCGATTTTCAGAGTCATTTTTGGCGTTGAAATCAAGTTTGAGCTCCAAAACTGCCTGAAAATCACATTTTCACTGTAATTTGAGCTAAAAATCGCCAAAATTGCCGATTTTGATATCAAAAACCTAGATTCTATCTTATTCTATCTTTTCTTATTTTTACAGTTAATTGCTGGCTTCAAAAGCATTTTTGGGTTGAATATGACCAAAATTTTGCGATTTTTGAGTTCGAAAATCCCATTTTTAAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCYCCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAATACGGATCCTGTCGATATGGAATAATGATTTGCGATCCGTTTTTCGCGAATTTATTGACGACGGGGAGGCCGAGGAAGCCCGAAGCGCCGAATACGGTAACCACGTTTCCGGAGAAGGAGGCTCTGGAAGAAAAAATGCATTTCGGGGCATTTGAAGCGATTTTAACCCATTTTTCAGCAATTTCTGACTATTCTGAGTGAAAATCCGGTCATTTTTTGAAAAAAAAATTTTTTGACGTAAACCTCAAATTTTCGGCTGAAATAGTTGATTTTAGAGGTTTTAGAGGCATTTTTCTAGCTTTTTAGACCCAGAAAACCGTTTAAAAACACCCCAAACCCATAGGAAAACCCTTTTTTCGAATTTTTTTCAAAATTTAGGTTTTTTTTCAGATTTTTTCAATTTTTTCCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>227 161 129 116 104 97 82 69 8 7</canonical_bands>
                <polymorphic_bands>227 173 161 129 116 97 82 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAGCTAAAAATCGACTAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTATATGAGAGAGCACAAAGTGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCACCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAA</canonical_amplicon>
		<polymorphic_amplicon>AAGAGCTAAAAATCGACTAAAAACCGGTTTTGGGGTCCAAAAATACAATTTTTAGTGCGATTTTCAGCTTTTAGAGCAGTTTTAGCGATTTTTGGAGCTATTTTTGGCTTTTAAAGCAATTTTTCGGCTCAAAATGCTCTAATATTGCAATTTTCAGCTCYCCTTGCGAATGCTCTCCTCATCCTTGAGCTCAAACGGAAAATAGAGGACCTGTCCGAGTTCTCCCAACACTTTGTGCTCTCTCATATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37666</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>10891</contig_pos>
        <strand>+</strand>
        <context>AAAGTATTTT[A/G]CTTTTTTAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCAAATTTTGATATGGTGATTGAGGAGGAAATAAAATTTAAAGTATTTT</left_flank>
        <right_flank>CTTTTTTAGATCATCAAAATCAGTGAAGAATGATGGATTTTAAGCTATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTTAGGTTTTTTTTCAGATTTTTTCAATTTTTTCCGAATTTCCAGATATTCCCTACCTTCCACCATTTCCCTTTCTAAATTGAGCCCCCTGTGAGCTCACTCGTGGCTCTGGATGCGCGTTTTCCGGGGTTAGAACCGAAATACTGCTATAGTTTTGGCTGGCGACCACTAGAACCGGCTGTCTCGACGATAAGGACCTACCCAAAACCGATAGCATGGCTGAAAATTTTTATATCTTCATTTAAATATTTTTTTACAAAAATATTCCAAAAAACTGGGCTAAAATCCGTTGAAAACAACCAAAAATCGAGGTGTGCGGTGCCAAAAAATTAAGTGAAGTACGCAATGTGTCGGCGGATCGGGTGCTTGCGGACGATGCGCATGCTGATTGCGGATCGTAGTAAATGACTCAAAATGCTGAAATTCAAGGGAATCTGAAATTTTTAGCAAATTTTGATATGGTGATTGAGGAGGAAATAAAATTTAAAGTATTTTACTTTTTTAGATCATCAAAATCAGTGAAGAATGATGGATTTTAAGCTATTTTTCGTAAAAATTGCATTTAAAAAAAGAAAAAAAGAAGAAAAACTGGGAAAATAATTTATTTTTTATAGGTTAGTTCATCATAAAAGGCGAGAATTTGGGTCGAAAAAAGTTGAGACACTTGTTGAACGCGGGATTTCGAAAACAATTCGAACTGCACTCGGCGGCAAGATTTGGCTGGTCCACCGAAAACATTTCATGACAAAGGAGGCATATTCGAGTGAGCACTTCGTTTAGAGCCGGTCTACGGTAGGCCTGAAAACTCTATTTTTAAGAAAATGGCGGGAAATTTGAATATGTGTTACCTTACAATTCCTGGAGTGATGATCAGGTCGACACAGGGCGGTGGCGATGAGAAGGGCGAAGATTAGCAGCGAGATTACTGTAATTTTTGGAATATTGAACGTCGAAATGTAACTGACATTCTCTTCTATGAAATGCTTTTTTCAGATT</canonical>
            <polymorphic>AAAATTTAGGTTTTTTTTCAGATTTTTTCAATTTTTTCCGAATTTCCAGATATTCCCTACCTTCCACCATTTCCCTTTCTAAATTGAGCCCCCTGTGAGCTCACTCGTGGCTCTGGATGCGCGTTTTCCGGGGTTAGAACCGAAATACTGCTATAGTTTTGGCTGGCGACCACTAGAACCGGCTGTCTCGACGATAAGGACCTACCCAAAACCGATAGCATGGCTGAAAATTTTTATATCTTCATTTAAATATTTTTTTACAAAAATATTCCAAAAAACTGGGCTAAAATCCGTTGAAAACAACCAAAAATCGAGGTGTGCGGTGCCAAAAAATTAAGTGAAGTACGCAATGTGTCGGCGGATCGGGTGCTTGCGGACGATGCGCATGCTGATTGCGGATCGTAGTAAATGACTCAAAATGCTGAAATTCAAGGGAATCTGAAATTTTTAGCAAATTTTGATATGGTGATTGAGGAGGAAATAAAATTTAAAGTATTTTRCTTTTTTAGATCATCAAAATCAGTGAAGAATGATGGATTTTAAGCTATTTTTCGTAAAAATTGCATTTAAAAAAAGAAAAAAAGAAGAAAAACTGGGAAAATAATTTATTTTTTATAGGTTAGTTCATCATAAAAGGCGAGAATTTGGGTCGAAAAAAGTTGAGACACTTGTTGAACGCGGGATTTCGAAAACAATTCGAACTGCACTCGGCGGCAAGATTTGGCTGGTCCACCGAAAACATTTCATGACAAAGGAGGCATATTCGAGTGAGCACTTCGTTTAGAGCCGGTCTACGGTAGGCCTGAAAACTCTATTTTTAAGAAAATGGCGGGAAATTTGAATATGTGTTACCTTACAATTCCTGGAGTGATGATCAGGTCGACACAGGGCGGTGGCGATGAGAAGGGCGAAGATTAGCAGCGAGATTACTGTAATTTTTGGAATATTGAACGTCGAAATGTAACTGACATTCTCTTCTATGAAATGCTTTTTTCAGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATCGTAGTAAATGACTCAAAA</pcr_primer_p1>
		<pcr_primer_p2>GCCTTTTATGATGAACTAACCTA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GGATCGTAGTAAATGACTCAAAATGCTGAAATTCAAGGGAATCTGAAATTTTTAGCAAATTTTGATATGGTGATTGAGGAGGAAATAAAATTTAAAGTATTTTACTTTTTTAGATCATCAAAATCAGTGAAGAATGATGGATTTTAAGCTATTTTTCGTAAAAATTGCATTTAAAAAAAGAAAAAAAGAAGAAAAACTGGGAAAATAATTTATTTTTTATAGGTTAGTTCATCATAAAAGGC</canonical_amplicon>
		<polymorphic_amplicon>GGATCGTAGTAAATGACTCAAAATGCTGAAATTCAAGGGAATCTGAAATTTTTAGCAAATTTTGATATGGTGATTGAGGAGGAAATAAAATTTAAAGTATTTTRCTTTTTTAGATCATCAAAATCAGTGAAGAATGATGGATTTTAAGCTATTTTTCGTAAAAATTGCATTTAAAAAAAGAAAAAAAGAAGAAAAACTGGGAAAATAATTTATTTTTTATAGGTTAGTTCATCATAAAAGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37667</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>11315</contig_pos>
        <strand>+</strand>
        <context>ATTAGCAGCG[A/T]GATTACTGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCAGGTCGACACAGGGCGGTGGCGATGAGAAGGGCGAAGATTAGCAGCG</left_flank>
        <right_flank>GATTACTGTAATTTTTGGAATATTGAACGTCGAAATGTAACTGACATTCT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTCAAGGGAATCTGAAATTTTTAGCAAATTTTGATATGGTGATTGAGGAGGAAATAAAATTTAAAGTATTTTACTTTTTTAGATCATCAAAATCAGTGAAGAATGATGGATTTTAAGCTATTTTTCGTAAAAATTGCATTTAAAAAAAGAAAAAAAGAAGAAAAACTGGGAAAATAATTTATTTTTTATAGGTTAGTTCATCATAAAAGGCGAGAATTTGGGTCGAAAAAAGTTGAGACACTTGTTGAACGCGGGATTTCGAAAACAATTCGAACTGCACTCGGCGGCAAGATTTGGCTGGTCCACCGAAAACATTTCATGACAAAGGAGGCATATTCGAGTGAGCACTTCGTTTAGAGCCGGTCTACGGTAGGCCTGAAAACTCTATTTTTAAGAAAATGGCGGGAAATTTGAATATGTGTTACCTTACAATTCCTGGAGTGATGATCAGGTCGACACAGGGCGGTGGCGATGAGAAGGGCGAAGATTAGCAGCGAGATTACTGTAATTTTTGGAATATTGAACGTCGAAATGTAACTGACATTCTCTTCTATGAAATGCTTTTTTCAGATTCCAAATATCACAAAAATGAAAAAAGTTAGAGCGATTTTAAGAAATTTTAGGGGTTCCAGCGAAAAATTCGAAATCTGAAAATCTTGAAATTTTCCTATTTGTCTGAAAATTTCCTATAATGTAAAACAAAAATAGAGCTTTATTTTTGTAATAGACAATTTTTTCTAGCTTTCGTAGTGTTTGAGATATGCGCCTTCAAAAAATGTACACCTTTTCGGCCGGCTCAAGAAAGGAGGGCATCTTTAAAGGCATATAACACAAAAACTACGATAGTTATCGAAAATTGTTGACTACAAAAATGTGGAAAATTACATTTCACACATTTTTGTAGTTTGCAACCTTTTTCTAGCTACAGTAGTTTTGGAGATATGCGCCTTTAAAGATAGGCATCCCTAGGTGCAGAGACCGCCGTCGAGTCTAGGTG</canonical>
            <polymorphic>AAATTCAAGGGAATCTGAAATTTTTAGCAAATTTTGATATGGTGATTGAGGAGGAAATAAAATTTAAAGTATTTTACTTTTTTAGATCATCAAAATCAGTGAAGAATGATGGATTTTAAGCTATTTTTCGTAAAAATTGCATTTAAAAAAAGAAAAAAAGAAGAAAAACTGGGAAAATAATTTATTTTTTATAGGTTAGTTCATCATAAAAGGCGAGAATTTGGGTCGAAAAAAGTTGAGACACTTGTTGAACGCGGGATTTCGAAAACAATTCGAACTGCACTCGGCGGCAAGATTTGGCTGGTCCACCGAAAACATTTCATGACAAAGGAGGCATATTCGAGTGAGCACTTCGTTTAGAGCCGGTCTACGGTAGGCCTGAAAACTCTATTTTTAAGAAAATGGCGGGAAATTTGAATATGTGTTACCTTACAATTCCTGGAGTGATGATCAGGTCGACACAGGGCGGTGGCGATGAGAAGGGCGAAGATTAGCAGCGWGATTACTGTAATTTTTGGAATATTGAACGTCGAAATGTAACTGACATTCTCTTCTATGAAATGCTTTTTTCAGATTCCAAATATCACAAAAATGAAAAAAGTTAGAGCGATTTTAAGAAATTTTAGGGGTTCCAGCGAAAAATTCGAAATCTGAAAATCTTGAAATTTTCCTATTTGTCTGAAAATTTCCTATAATGTAAAACAAAAATAGAGCTTTATTTTTGTAATAGACAATTTTTTCTAGCTTTCGTAGTGTTTGAGATATGCGCCTTCAAAAAATGTACACCTTTTCGGCCGGCTCAAGAAAGGAGGGCATCTTTAAAGGCATATAACACAAAAACTACGATAGTTATCGAAAATTGTTGACTACAAAAATGTGGAAAATTACATTTCACACATTTTTGTAGTTTGCAACCTTTTTCTAGCTACAGTAGTTTTGGAGATATGCGCCTTTAAAGATAGGCATCCCTAGGTGCAGAGACCGCCGTCGAGTCTAGGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTAGGCCTGAAAACTCTATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTAAAATCGCTCTAACTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTAGGCCTGAAAACTCTATTTTTAAGAAAATGGCGGGAAATTTGAATATGTGTTACCTTACAATTCCTGGAGTGATGATCAGGTCGACACAGGGCGGTGGCGATGAGAAGGGCGAAGATTAGCAGCGAGATTACTGTAATTTTTGGAATATTGAACGTCGAAATGTAACTGACATTCTCTTCTATGAAATGCTTTTTTCAGATTCCAAATATCACAAAAATGAAAAAAGTTAGAGCGATTTTAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTAGGCCTGAAAACTCTATTTTTAAGAAAATGGCGGGAAATTTGAATATGTGTTACCTTACAATTCCTGGAGTGATGATCAGGTCGACACAGGGCGGTGGCGATGAGAAGGGCGAAGATTAGCAGCGWGATTACTGTAATTTTTGGAATATTGAACGTCGAAATGTAACTGACATTCTCTTCTATGAAATGCTTTTTTCAGATTCCAAATATCACAAAAATGAAAAAAGTTAGAGCGATTTTAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37679</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>39208</contig_pos>
        <strand></strand>
        <context>atactttttt[T/A]aaagcatttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTGGGAAAATTTCAAATTTGACCAATCCTAGTCATGTTTATACTTTTTT</left_flank>
        <right_flank>AAAGCATTTTTCACGACAAATTTGAATTTTTTGTCTATTTTGAGTGTCAG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGCGACACAAACTGTATAATAGTTGGTAGTTGTCCAGCAGCCACAAATCCGAATCCTATATCTTTCCCCCGTCGAATACTAACTGTCCTCTTGCCATCGGGTGGCCGAGTTTTTCTGGGATCGGTGTAGGTGGTGGCTCGATTCAAATGGCTAAAAAAGTTAGATTGATGGGGATTACTGTAGATTTCGCATACTCTATGTAATAAGTGTTCCCGTCGTTATCCTTTGCTTGTTCCCATCCGTAAGGCAGTCCCAGACGACACCGCCATGACGCCCATGGTGGTTCCCAGTGGGAGCTTCGAGTGGTGTGGCTGGAAACATGACAAGGTTAAGAAGCTTGAAATAATGATATTTGAATTTGAGATGTTTTTAGCTTCAAAATGAGCCCAAACACGACCTACATTGGTTCAGTTTGAAATTTCTCAATTTTCGTGGTGGGACCCAAAATTTTGGGAAAATTTCAAATTTGACCAATCCTAGTCATGTTTATACTTTTTTTAAAGCATTTTTCACGACAAATTTGAATTTTTTGTCTATTTTGAGTGTCAGACTTTTCTTTTAACCCTTTTTTTGAGCACTTACATCAAATCTTTAATCTCATCAACACTTCCCGAACAACAAATACGTTTGGGTGGTGATTGAGACCCATTCGCGTAGAATTGAAGACTTTTTGATTTTTGCATTTTCGATTTTTTTTGATTTATTCAGGACCCATTTGCTGTGATGTAAATCTTTTTTTTTTGAGATTCAAAGGATTACGGTAGAGAGAAAAATTAAAAAATCGGAAAATGAAAAAAAGAAGGTAAACCATAAGTCTGAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGAAATTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGCGAACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAAACATCGAAAAT</canonical>
            <polymorphic>TGGCGACACAAACTGTATAATAGTTGGTAGTTGTCCAGCAGCCACAAATCCGAATCCTATATCTTTCCCCCGTCGAATACTAACTGTCCTCTTGCCATCGGGTGGCCGAGTTTTTCTGGGATCGGTGTAGGTGGTGGCTCGATTCAAATGGCTAAAAAAGTTAGATTGATGGGGATTACTGTAGATTTCGCATACTCTATGTAATAAGTGTTCCCGTCGTTATCCTTTGCTTGTTCCCATCCGTAAGGCAGTCCCAGACGACACCGCCATGACGCCCATGGTGGTTCCCAGTGGGAGCTTCGAGTGGTGTGGCTGGAAACATGACAAGGTTAAGAAGCTTGAAATAATGATATTTGAATTTGAGATGTTTTTAGCTTCAAAATGAGCCCAAACACGACCTACATTGGTTCAGTTTGAAATTTCTCAATTTTCGTGGTGGGACCCAAAATTTTGGGAAAATTTCAAATTTGACCAATCCTAGTCATGTTTATACTTTTTTWAAAGCATTTTTCACGACAAATTTGAATTTTTTGTCTATTTTGAGTGTCAGACTTTTCTTTTAACCCTTTTTTTGAGCACTTACATCAAATCTTTAATCTCATCAACACTTCCCGAACAACAAATACGTTTGGGTGGTGATTGAGACCCATTCGCGTAGAATTGAAGACTTTTTGATTTTTGCATTTTCGATTTTTTTTGATTTATTCAGGACCCATTTGCTGTGATGTAAATCTTTTTTTTTTGAGATTCAAAGGATTACGGTAGAGAGAAAAATTAAAAAATCGGAAAATGAAAAAAAGAAGGTAAACCATAAGTCTGAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGAAATTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGCGAACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAAACATCGAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>330 182 169 167 61 58 33</canonical_bands>
                <polymorphic_bands>330 230 182 167 58 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAACATGACAAGGTTAAGAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGGGTTAAAAGAAAAGTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>GGAAACATGACAAGGTTAAGAAGCTTGAAATAATGATATTTGAATTTGAGATGTTTTTAGCTTCAAAATGAGCCCAAACACGACCTACATTGGTTCAGTTTGAAATTTCTCAATTTTCGTGGTGGGACCCAAAATTTTGGGAAAATTTCAAATTTGACCAATCCTAGTCATGTTTATACTTTTTTTAAAGCATTTTTCACGACAAATTTGAATTTTTTGTCTATTTTGAGTGTCAGACTTTTCTTTTAACCCTTT</canonical_amplicon>
		<polymorphic_amplicon>GGAAACATGACAAGGTTAAGAAGCTTGAAATAATGATATTTGAATTTGAGATGTTTTTAGCTTCAAAATGAGCCCAAACACGACCTACATTGGTTCAGTTTGAAATTTCTCAATTTTCGTGGTGGGACCCAAAATTTTGGGAAAATTTCAAATTTGACCAATCCTAGTCATGTTTATACTTTTTTWAAAGCATTTTTCACGACAAATTTGAATTTTTTGTCTATTTTGAGTGTCAGACTTTTCTTTTAACCCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37680</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>39254</contig_pos>
        <strand>+</strand>
        <context>TATTTTGAGT[G/T]TCAGACTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTTAAAGCATTTTTCACGACAAATTTGAATTTTTTGTCTATTTTGAGT</left_flank>
        <right_flank>TCAGACTTTTCTTTTAACCCTTTTTTTGAGCACTTACATCAAATCTTTAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCCGAATCCTATATCTTTCCCCCGTCGAATACTAACTGTCCTCTTGCCATCGGGTGGCCGAGTTTTTCTGGGATCGGTGTAGGTGGTGGCTCGATTCAAATGGCTAAAAAAGTTAGATTGATGGGGATTACTGTAGATTTCGCATACTCTATGTAATAAGTGTTCCCGTCGTTATCCTTTGCTTGTTCCCATCCGTAAGGCAGTCCCAGACGACACCGCCATGACGCCCATGGTGGTTCCCAGTGGGAGCTTCGAGTGGTGTGGCTGGAAACATGACAAGGTTAAGAAGCTTGAAATAATGATATTTGAATTTGAGATGTTTTTAGCTTCAAAATGAGCCCAAACACGACCTACATTGGTTCAGTTTGAAATTTCTCAATTTTCGTGGTGGGACCCAAAATTTTGGGAAAATTTCAAATTTGACCAATCCTAGTCATGTTTATACTTTTTTTAAAGCATTTTTCACGACAAATTTGAATTTTTTGTCTATTTTGAGTGTCAGACTTTTCTTTTAACCCTTTTTTTGAGCACTTACATCAAATCTTTAATCTCATCAACACTTCCCGAACAACAAATACGTTTGGGTGGTGATTGAGACCCATTCGCGTAGAATTGAAGACTTTTTGATTTTTGCATTTTCGATTTTTTTTGATTTATTCAGGACCCATTTGCTGTGATGTAAATCTTTTTTTTTTGAGATTCAAAGGATTACGGTAGAGAGAAAAATTAAAAAATCGGAAAATGAAAAAAAGAAGGTAAACCATAAGTCTGAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGAAATTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGCGAACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAAACATCGAAAATTCTCAATTTTCAATCGAAAATAACTATAAAAGTTGATTTATACAGT</canonical>
            <polymorphic>AATCCGAATCCTATATCTTTCCCCCGTCGAATACTAACTGTCCTCTTGCCATCGGGTGGCCGAGTTTTTCTGGGATCGGTGTAGGTGGTGGCTCGATTCAAATGGCTAAAAAAGTTAGATTGATGGGGATTACTGTAGATTTCGCATACTCTATGTAATAAGTGTTCCCGTCGTTATCCTTTGCTTGTTCCCATCCGTAAGGCAGTCCCAGACGACACCGCCATGACGCCCATGGTGGTTCCCAGTGGGAGCTTCGAGTGGTGTGGCTGGAAACATGACAAGGTTAAGAAGCTTGAAATAATGATATTTGAATTTGAGATGTTTTTAGCTTCAAAATGAGCCCAAACACGACCTACATTGGTTCAGTTTGAAATTTCTCAATTTTCGTGGTGGGACCCAAAATTTTGGGAAAATTTCAAATTTGACCAATCCTAGTCATGTTTATACTTTTTTTAAAGCATTTTTCACGACAAATTTGAATTTTTTGTCTATTTTGAGTKTCAGACTTTTCTTTTAACCCTTTTTTTGAGCACTTACATCAAATCTTTAATCTCATCAACACTTCCCGAACAACAAATACGTTTGGGTGGTGATTGAGACCCATTCGCGTAGAATTGAAGACTTTTTGATTTTTGCATTTTCGATTTTTTTTGATTTATTCAGGACCCATTTGCTGTGATGTAAATCTTTTTTTTTTGAGATTCAAAGGATTACGGTAGAGAGAAAAATTAAAAAATCGGAAAATGAAAAAAAGAAGGTAAACCATAAGTCTGAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGAAATTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGCGAACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAAACATCGAAAATTCTCAATTTTCAATCGAAAATAACTATAAAAGTTGATTTATACAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>128 91 86 83 75 74 61 58 53 41 33 32 29 28 23 22 20 20 13 10 6 3 3 3 3 2</canonical_bands>
                <polymorphic_bands>128 91 86 83 75 74 65 61 58 53 41 29 28 23 22 20 20 13 10 6 3 3 3 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAACATGACAAGGTTAAGAA</pcr_primer_p1>
		<pcr_primer_p2>GGAAGTGTTGATGAGATTAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>298</pcr_amplicon_size>
		<canonical_amplicon>GGAAACATGACAAGGTTAAGAAGCTTGAAATAATGATATTTGAATTTGAGATGTTTTTAGCTTCAAAATGAGCCCAAACACGACCTACATTGGTTCAGTTTGAAATTTCTCAATTTTCGTGGTGGGACCCAAAATTTTGGGAAAATTTCAAATTTGACCAATCCTAGTCATGTTTATACTTTTTTTAAAGCATTTTTCACGACAAATTTGAATTTTTTGTCTATTTTGAGTGTCAGACTTTTCTTTTAACCCTTTTTTTGAGCACTTACATCAAATCTTTAATCTCATCAACACTTCC</canonical_amplicon>
		<polymorphic_amplicon>GGAAACATGACAAGGTTAAGAAGCTTGAAATAATGATATTTGAATTTGAGATGTTTTTAGCTTCAAAATGAGCCCAAACACGACCTACATTGGTTCAGTTTGAAATTTCTCAATTTTCGTGGTGGGACCCAAAATTTTGGGAAAATTTCAAATTTGACCAATCCTAGTCATGTTTATACTTTTTTTAAAGCATTTTTCACGACAAATTTGAATTTTTTGTCTATTTTGAGTKTCAGACTTTTCTTTTAACCCTTTTTTTGAGCACTTACATCAAATCTTTAATCTCATCAACACTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37681</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>39282</contig_pos>
        <strand>+</strand>
        <context>CCCTTTTTTT[C/T]AGCACTTACA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAATTTTTTGTCTATTTTGAGTGTCAGACTTTTCTTTTAACCCTTTTTTT</left_flank>
        <right_flank>AGCACTTACATCAAATCTTTAATCTCATCAACACTTCCCGAACAACAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATACTAACTGTCCTCTTGCCATCGGGTGGCCGAGTTTTTCTGGGATCGGTGTAGGTGGTGGCTCGATTCAAATGGCTAAAAAAGTTAGATTGATGGGGATTACTGTAGATTTCGCATACTCTATGTAATAAGTGTTCCCGTCGTTATCCTTTGCTTGTTCCCATCCGTAAGGCAGTCCCAGACGACACCGCCATGACGCCCATGGTGGTTCCCAGTGGGAGCTTCGAGTGGTGTGGCTGGAAACATGACAAGGTTAAGAAGCTTGAAATAATGATATTTGAATTTGAGATGTTTTTAGCTTCAAAATGAGCCCAAACACGACCTACATTGGTTCAGTTTGAAATTTCTCAATTTTCGTGGTGGGACCCAAAATTTTGGGAAAATTTCAAATTTGACCAATCCTAGTCATGTTTATACTTTTTTTAAAGCATTTTTCACGACAAATTTGAATTTTTTGTCTATTTTGAGTGTCAGACTTTTCTTTTAACCCTTTTTTTGAGCACTTACATCAAATCTTTAATCTCATCAACACTTCCCGAACAACAAATACGTTTGGGTGGTGATTGAGACCCATTCGCGTAGAATTGAAGACTTTTTGATTTTTGCATTTTCGATTTTTTTTGATTTATTCAGGACCCATTTGCTGTGATGTAAATCTTTTTTTTTTGAGATTCAAAGGATTACGGTAGAGAGAAAAATTAAAAAATCGGAAAATGAAAAAAAGAAGGTAAACCATAAGTCTGAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGAAATTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGCGAACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAAACATCGAAAATTCTCAATTTTCAATCGAAAATAACTATAAAAGTTGATTTATACAGTAAAATCGAAACAAATCACGAATTTTCGA</canonical>
            <polymorphic>GAATACTAACTGTCCTCTTGCCATCGGGTGGCCGAGTTTTTCTGGGATCGGTGTAGGTGGTGGCTCGATTCAAATGGCTAAAAAAGTTAGATTGATGGGGATTACTGTAGATTTCGCATACTCTATGTAATAAGTGTTCCCGTCGTTATCCTTTGCTTGTTCCCATCCGTAAGGCAGTCCCAGACGACACCGCCATGACGCCCATGGTGGTTCCCAGTGGGAGCTTCGAGTGGTGTGGCTGGAAACATGACAAGGTTAAGAAGCTTGAAATAATGATATTTGAATTTGAGATGTTTTTAGCTTCAAAATGAGCCCAAACACGACCTACATTGGTTCAGTTTGAAATTTCTCAATTTTCGTGGTGGGACCCAAAATTTTGGGAAAATTTCAAATTTGACCAATCCTAGTCATGTTTATACTTTTTTTAAAGCATTTTTCACGACAAATTTGAATTTTTTGTCTATTTTGAGTGTCAGACTTTTCTTTTAACCCTTTTTTTYAGCACTTACATCAAATCTTTAATCTCATCAACACTTCCCGAACAACAAATACGTTTGGGTGGTGATTGAGACCCATTCGCGTAGAATTGAAGACTTTTTGATTTTTGCATTTTCGATTTTTTTTGATTTATTCAGGACCCATTTGCTGTGATGTAAATCTTTTTTTTTTGAGATTCAAAGGATTACGGTAGAGAGAAAAATTAAAAAATCGGAAAATGAAAAAAAGAAGGTAAACCATAAGTCTGAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGAAATTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGCGAACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAAACATCGAAAATTCTCAATTTTCAATCGAAAATAACTATAAAAGTTGATTTATACAGTAAAATCGAAACAAATCACGAATTTTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>496 314 190</canonical_bands>
                <polymorphic_bands>686 314</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAACATGACAAGGTTAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TATTTGTTGTTCGGGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>GGAAACATGACAAGGTTAAGAAGCTTGAAATAATGATATTTGAATTTGAGATGTTTTTAGCTTCAAAATGAGCCCAAACACGACCTACATTGGTTCAGTTTGAAATTTCTCAATTTTCGTGGTGGGACCCAAAATTTTGGGAAAATTTCAAATTTGACCAATCCTAGTCATGTTTATACTTTTTTTAAAGCATTTTTCACGACAAATTTGAATTTTTTGTCTATTTTGAGTGTCAGACTTTTCTTTTAACCCTTTTTTTGAGCACTTACATCAAATCTTTAATCTCATCAACACTTCCCGAACAACAAATA</canonical_amplicon>
		<polymorphic_amplicon>GGAAACATGACAAGGTTAAGAAGCTTGAAATAATGATATTTGAATTTGAGATGTTTTTAGCTTCAAAATGAGCCCAAACACGACCTACATTGGTTCAGTTTGAAATTTCTCAATTTTCGTGGTGGGACCCAAAATTTTGGGAAAATTTCAAATTTGACCAATCCTAGTCATGTTTATACTTTTTTTAAAGCATTTTTCACGACAAATTTGAATTTTTTGTCTATTTTGAGTGTCAGACTTTTCTTTTAACCCTTTTTTTYAGCACTTACATCAAATCTTTAATCTCATCAACACTTCCCGAACAACAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37682</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>39577</contig_pos>
        <strand></strand>
        <context>tctggtctag[A/C]aawttgattt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAG</left_flank>
        <right_flank>AATTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACT</right_flank>
        <qual_score>50</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAGCTTCAAAATGAGCCCAAACACGACCTACATTGGTTCAGTTTGAAATTTCTCAATTTTCGTGGTGGGACCCAAAATTTTGGGAAAATTTCAAATTTGACCAATCCTAGTCATGTTTATACTTTTTTTAAAGCATTTTTCACGACAAATTTGAATTTTTTGTCTATTTTGAGTGTCAGACTTTTCTTTTAACCCTTTTTTTGAGCACTTACATCAAATCTTTAATCTCATCAACACTTCCCGAACAACAAATACGTTTGGGTGGTGATTGAGACCCATTCGCGTAGAATTGAAGACTTTTTGATTTTTGCATTTTCGATTTTTTTTGATTTATTCAGGACCCATTTGCTGTGATGTAAATCTTTTTTTTTTGAGATTCAAAGGATTACGGTAGAGAGAAAAATTAAAAAATCGGAAAATGAAAAAAAGAAGGTAAACCATAAGTCTGAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGAAATTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGCGAACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAAACATCGAAAATTCTCAATTTTCAATCGAAAATAACTATAAAAGTTGATTTATACAGTAAAATCGAAACAAATCACGAATTTTCGAAAAAATTCCAAAATTTCCCTTTTCTGTAATTTTTCAAAAATCATGAAAAGTTACAAAAACCACTTTTCCGAGTGAAAACAACACCGGGAAATTCAAAAATTGACTTTAAATTAAGCTCAGGAGTGATTTTCCCACTAACAAAAACACATTTTCGCTATTTTTTTCCAAAAAATTCCAAAAAAGATTTTTTTTCGAATTTTTCAAAAATCATGAAAAACCGCAGAAAAAAGATTTCCGAGTTAAAAAACGTTGAGAAGTTCGAATTTCCTATCAAAATTGACCCTAGAAGTGAATT</canonical>
            <polymorphic>TTTAGCTTCAAAATGAGCCCAAACACGACCTACATTGGTTCAGTTTGAAATTTCTCAATTTTCGTGGTGGGACCCAAAATTTTGGGAAAATTTCAAATTTGACCAATCCTAGTCATGTTTATACTTTTTTTAAAGCATTTTTCACGACAAATTTGAATTTTTTGTCTATTTTGAGTGTCAGACTTTTCTTTTAACCCTTTTTTTGAGCACTTACATCAAATCTTTAATCTCATCAACACTTCCCGAACAACAAATACGTTTGGGTGGTGATTGAGACCCATTCGCGTAGAATTGAAGACTTTTTGATTTTTGCATTTTCGATTTTTTTTGATTTATTCAGGACCCATTTGCTGTGATGTAAATCTTTTTTTTTTGAGATTCAAAGGATTACGGTAGAGAGAAAAATTAAAAAATCGGAAAATGAAAAAAAGAAGGTAAACCATAAGTCTGAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGMAATTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGCGAACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAAACATCGAAAATTCTCAATTTTCAATCGAAAATAACTATAAAAGTTGATTTATACAGTAAAATCGAAACAAATCACGAATTTTCGAAAAAATTCCAAAATTTCCCTTTTCTGTAATTTTTCAAAAATCATGAAAAGTTACAAAAACCACTTTTCCGAGTGAAAACAACACCGGGAAATTCAAAAATTGACTTTAAATTAAGCTCAGGAGTGATTTTCCCACTAACAAAAACACATTTTCGCTATTTTTTTCCAAAAAATTCCAAAAAAGATTTTTTTTCGAATTTTTCAAAAATCATGAAAAACCGCAGAAAAAAGATTTCCGAGTTAAAAAACGTTGAGAAGTTCGAATTTCCTATCAAAATTGACCCTAGAAGTGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>313 128 81 78 68 67 54 48 34 32 29 24 12 11 8 7 6</canonical_bands>
                <polymorphic_bands>313 160 81 78 68 67 54 48 34 29 24 12 11 8 7 6</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>161 158 143 99 96 91 86 76 54 36</canonical_bands>
                <polymorphic_bands>194 161 143 99 96 91 86 76 54</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACCATAAGTCTGAGAATAGTATGG</pcr_primer_p1>
		<pcr_primer_p2>GGTTTTTGTAACTTTTCATGATT</pcr_primer_p2>
		<pcr_amplicon_size>329</pcr_amplicon_size>
		<canonical_amplicon>AACCATAAGTCTGAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGAAATTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGCGAACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAAACATCGAAAATTCTCAATTTTCAATCGAAAATAACTATAAAAGTTGATTTATACAGTAAAATCGAAACAAATCACGAATTTTCGAAAAAATTCCAAAATTTCCCTTTTCTGTAATTTTTCAAAAATCATGAAAAGTTACAAAAACC</canonical_amplicon>
		<polymorphic_amplicon>AACCATAAGTCTGAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGMAATTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGCGAACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAAACATCGAAAATTCTCAATTTTCAATCGAAAATAACTATAAAAGTTGATTTATACAGTAAAATCGAAACAAATCACGAATTTTCGAAAAAATTCCAAAATTTCCCTTTTCTGTAATTTTTCAAAAATCATGAAAAGTTACAAAAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37683</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>39580</contig_pos>
        <strand></strand>
        <context>ggtctagmaa[T/A]ttgatttttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGAAA</left_flank>
        <right_flank>TTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTA</right_flank>
        <qual_score>49</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTTCAAAATGAGCCCAAACACGACCTACATTGGTTCAGTTTGAAATTTCTCAATTTTCGTGGTGGGACCCAAAATTTTGGGAAAATTTCAAATTTGACCAATCCTAGTCATGTTTATACTTTTTTTAAAGCATTTTTCACGACAAATTTGAATTTTTTGTCTATTTTGAGTGTCAGACTTTTCTTTTAACCCTTTTTTTGAGCACTTACATCAAATCTTTAATCTCATCAACACTTCCCGAACAACAAATACGTTTGGGTGGTGATTGAGACCCATTCGCGTAGAATTGAAGACTTTTTGATTTTTGCATTTTCGATTTTTTTTGATTTATTCAGGACCCATTTGCTGTGATGTAAATCTTTTTTTTTTGAGATTCAAAGGATTACGGTAGAGAGAAAAATTAAAAAATCGGAAAATGAAAAAAAGAAGGTAAACCATAAGTCTGAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGAAATTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGCGAACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAAACATCGAAAATTCTCAATTTTCAATCGAAAATAACTATAAAAGTTGATTTATACAGTAAAATCGAAACAAATCACGAATTTTCGAAAAAATTCCAAAATTTCCCTTTTCTGTAATTTTTCAAAAATCATGAAAAGTTACAAAAACCACTTTTCCGAGTGAAAACAACACCGGGAAATTCAAAAATTGACTTTAAATTAAGCTCAGGAGTGATTTTCCCACTAACAAAAACACATTTTCGCTATTTTTTTCCAAAAAATTCCAAAAAAGATTTTTTTTCGAATTTTTCAAAAATCATGAAAAACCGCAGAAAAAAGATTTCCGAGTTAAAAAACGTTGAGAAGTTCGAATTTCCTATCAAAATTGACCCTAGAAGTGAATTTCG</canonical>
            <polymorphic>AGCTTCAAAATGAGCCCAAACACGACCTACATTGGTTCAGTTTGAAATTTCTCAATTTTCGTGGTGGGACCCAAAATTTTGGGAAAATTTCAAATTTGACCAATCCTAGTCATGTTTATACTTTTTTTAAAGCATTTTTCACGACAAATTTGAATTTTTTGTCTATTTTGAGTGTCAGACTTTTCTTTTAACCCTTTTTTTGAGCACTTACATCAAATCTTTAATCTCATCAACACTTCCCGAACAACAAATACGTTTGGGTGGTGATTGAGACCCATTCGCGTAGAATTGAAGACTTTTTGATTTTTGCATTTTCGATTTTTTTTGATTTATTCAGGACCCATTTGCTGTGATGTAAATCTTTTTTTTTTGAGATTCAAAGGATTACGGTAGAGAGAAAAATTAAAAAATCGGAAAATGAAAAAAAGAAGGTAAACCATAAGTCTGAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGAAAWTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGCGAACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAAACATCGAAAATTCTCAATTTTCAATCGAAAATAACTATAAAAGTTGATTTATACAGTAAAATCGAAACAAATCACGAATTTTCGAAAAAATTCCAAAATTTCCCTTTTCTGTAATTTTTCAAAAATCATGAAAAGTTACAAAAACCACTTTTCCGAGTGAAAACAACACCGGGAAATTCAAAAATTGACTTTAAATTAAGCTCAGGAGTGATTTTCCCACTAACAAAAACACATTTTCGCTATTTTTTTCCAAAAAATTCCAAAAAAGATTTTTTTTCGAATTTTTCAAAAATCATGAAAAACCGCAGAAAAAAGATTTCCGAGTTAAAAAACGTTGAGAAGTTCGAATTTCCTATCAAAATTGACCCTAGAAGTGAATTTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>313 128 81 78 68 67 54 45 32 30 29 24 12 11 8 7 7 6</canonical_bands>
                <polymorphic_bands>313 160 81 78 68 67 54 45 30 29 24 12 11 8 7 7 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>134 128 114 67 65 62 62 61 54 45 32 24 21 17 16 13 12 11 11 8 8 8 7 7 7 6</canonical_bands>
                <polymorphic_bands>160 134 114 67 65 62 62 61 54 45 24 21 17 16 13 12 11 11 8 8 8 7 7 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACCATAAGTCTGAGAATAGTATGG</pcr_primer_p1>
		<pcr_primer_p2>GGTTTTTGTAACTTTTCATGATT</pcr_primer_p2>
		<pcr_amplicon_size>329</pcr_amplicon_size>
		<canonical_amplicon>AACCATAAGTCTGAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGAAATTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGCGAACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAAACATCGAAAATTCTCAATTTTCAATCGAAAATAACTATAAAAGTTGATTTATACAGTAAAATCGAAACAAATCACGAATTTTCGAAAAAATTCCAAAATTTCCCTTTTCTGTAATTTTTCAAAAATCATGAAAAGTTACAAAAACC</canonical_amplicon>
		<polymorphic_amplicon>AACCATAAGTCTGAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGAAAWTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGCGAACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAAACATCGAAAATTCTCAATTTTCAATCGAAAATAACTATAAAAGTTGATTTATACAGTAAAATCGAAACAAATCACGAATTTTCGAAAAAATTCCAAAATTTCCCTTTTCTGTAATTTTTCAAAAATCATGAAAAGTTACAAAAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37684</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>39647</contig_pos>
        <strand></strand>
        <context>aaaagtacgc[G/A]aacactaaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGC</left_flank>
        <right_flank>AACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAA</right_flank>
        <qual_score>50</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACCCAAAATTTTGGGAAAATTTCAAATTTGACCAATCCTAGTCATGTTTATACTTTTTTTAAAGCATTTTTCACGACAAATTTGAATTTTTTGTCTATTTTGAGTGTCAGACTTTTCTTTTAACCCTTTTTTTGAGCACTTACATCAAATCTTTAATCTCATCAACACTTCCCGAACAACAAATACGTTTGGGTGGTGATTGAGACCCATTCGCGTAGAATTGAAGACTTTTTGATTTTTGCATTTTCGATTTTTTTTGATTTATTCAGGACCCATTTGCTGTGATGTAAATCTTTTTTTTTTGAGATTCAAAGGATTACGGTAGAGAGAAAAATTAAAAAATCGGAAAATGAAAAAAAGAAGGTAAACCATAAGTCTGAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGAAATTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGCGAACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAAACATCGAAAATTCTCAATTTTCAATCGAAAATAACTATAAAAGTTGATTTATACAGTAAAATCGAAACAAATCACGAATTTTCGAAAAAATTCCAAAATTTCCCTTTTCTGTAATTTTTCAAAAATCATGAAAAGTTACAAAAACCACTTTTCCGAGTGAAAACAACACCGGGAAATTCAAAAATTGACTTTAAATTAAGCTCAGGAGTGATTTTCCCACTAACAAAAACACATTTTCGCTATTTTTTTCCAAAAAATTCCAAAAAAGATTTTTTTTCGAATTTTTCAAAAATCATGAAAAACCGCAGAAAAAAGATTTCCGAGTTAAAAAACGTTGAGAAGTTCGAATTTCCTATCAAAATTGACCCTAGAAGTGAATTTCGGCACCAAAATGTGAAAATTCAAAATTCGAAATCCTAGATTTTTTTTTTCCCTAAAAATCATGAAACA</canonical>
            <polymorphic>GACCCAAAATTTTGGGAAAATTTCAAATTTGACCAATCCTAGTCATGTTTATACTTTTTTTAAAGCATTTTTCACGACAAATTTGAATTTTTTGTCTATTTTGAGTGTCAGACTTTTCTTTTAACCCTTTTTTTGAGCACTTACATCAAATCTTTAATCTCATCAACACTTCCCGAACAACAAATACGTTTGGGTGGTGATTGAGACCCATTCGCGTAGAATTGAAGACTTTTTGATTTTTGCATTTTCGATTTTTTTTGATTTATTCAGGACCCATTTGCTGTGATGTAAATCTTTTTTTTTTGAGATTCAAAGGATTACGGTAGAGAGAAAAATTAAAAAATCGGAAAATGAAAAAAAGAAGGTAAACCATAAGTCTGAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGAAATTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGCRAACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAAACATCGAAAATTCTCAATTTTCAATCGAAAATAACTATAAAAGTTGATTTATACAGTAAAATCGAAACAAATCACGAATTTTCGAAAAAATTCCAAAATTTCCCTTTTCTGTAATTTTTCAAAAATCATGAAAAGTTACAAAAACCACTTTTCCGAGTGAAAACAACACCGGGAAATTCAAAAATTGACTTTAAATTAAGCTCAGGAGTGATTTTCCCACTAACAAAAACACATTTTCGCTATTTTTTTCCAAAAAATTCCAAAAAAGATTTTTTTTCGAATTTTTCAAAAATCATGAAAAACCGCAGAAAAAAGATTTCCGAGTTAAAAAACGTTGAGAAGTTCGAATTTCCTATCAAAATTGACCCTAGAAGTGAATTTCGGCACCAAAATGTGAAAATTCAAAATTCGAAATCCTAGATTTTTTTTTTCCCTAAAAATCATGAAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 214 190 94</canonical_bands>
                <polymorphic_bands>596 214 190</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACCATAAGTCTGAGAATAGTATGG</pcr_primer_p1>
		<pcr_primer_p2>GGTTTTTGTAACTTTTCATGATT</pcr_primer_p2>
		<pcr_amplicon_size>329</pcr_amplicon_size>
		<canonical_amplicon>AACCATAAGTCTGAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGAAATTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGCGAACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAAACATCGAAAATTCTCAATTTTCAATCGAAAATAACTATAAAAGTTGATTTATACAGTAAAATCGAAACAAATCACGAATTTTCGAAAAAATTCCAAAATTTCCCTTTTCTGTAATTTTTCAAAAATCATGAAAAGTTACAAAAACC</canonical_amplicon>
		<polymorphic_amplicon>AACCATAAGTCTGAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGAAATTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGCRAACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAAACATCGAAAATTCTCAATTTTCAATCGAAAATAACTATAAAAGTTGATTTATACAGTAAAATCGAAACAAATCACGAATTTTCGAAAAAATTCCAAAATTTCCCTTTTCTGTAATTTTTCAAAAATCATGAAAAGTTACAAAAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37685</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>39724</contig_pos>
        <strand></strand>
        <context>attttcaatc[G/A]aaaataacya</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAAAGATGTTTCTAGGGGTGAAAAACATCGAAAATTCTCAATTTTCAATC</left_flank>
        <right_flank>AAAATAACTATAAAAGTTGATTTATACAGTAAAATCGAAACAAATCACGA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAATTTGAATTTTTTGTCTATTTTGAGTGTCAGACTTTTCTTTTAACCCTTTTTTTGAGCACTTACATCAAATCTTTAATCTCATCAACACTTCCCGAACAACAAATACGTTTGGGTGGTGATTGAGACCCATTCGCGTAGAATTGAAGACTTTTTGATTTTTGCATTTTCGATTTTTTTTGATTTATTCAGGACCCATTTGCTGTGATGTAAATCTTTTTTTTTTGAGATTCAAAGGATTACGGTAGAGAGAAAAATTAAAAAATCGGAAAATGAAAAAAAGAAGGTAAACCATAAGTCTGAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGAAATTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGCGAACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAAACATCGAAAATTCTCAATTTTCAATCGAAAATAACTATAAAAGTTGATTTATACAGTAAAATCGAAACAAATCACGAATTTTCGAAAAAATTCCAAAATTTCCCTTTTCTGTAATTTTTCAAAAATCATGAAAAGTTACAAAAACCACTTTTCCGAGTGAAAACAACACCGGGAAATTCAAAAATTGACTTTAAATTAAGCTCAGGAGTGATTTTCCCACTAACAAAAACACATTTTCGCTATTTTTTTCCAAAAAATTCCAAAAAAGATTTTTTTTCGAATTTTTCAAAAATCATGAAAAACCGCAGAAAAAAGATTTCCGAGTTAAAAAACGTTGAGAAGTTCGAATTTCCTATCAAAATTGACCCTAGAAGTGAATTTCGGCACCAAAATGTGAAAATTCAAAATTCGAAATCCTAGATTTTTTTTTTCCCTAAAAATCATGAAACAATTTAAAGGTGGGGGGACATGAAAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAAC</canonical>
            <polymorphic>CAAATTTGAATTTTTTGTCTATTTTGAGTGTCAGACTTTTCTTTTAACCCTTTTTTTGAGCACTTACATCAAATCTTTAATCTCATCAACACTTCCCGAACAACAAATACGTTTGGGTGGTGATTGAGACCCATTCGCGTAGAATTGAAGACTTTTTGATTTTTGCATTTTCGATTTTTTTTGATTTATTCAGGACCCATTTGCTGTGATGTAAATCTTTTTTTTTTGAGATTCAAAGGATTACGGTAGAGAGAAAAATTAAAAAATCGGAAAATGAAAAAAAGAAGGTAAACCATAAGTCTGAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGAAATTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGCGAACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAAACATCGAAAATTCTCAATTTTCAATCRAAAATAACTATAAAAGTTGATTTATACAGTAAAATCGAAACAAATCACGAATTTTCGAAAAAATTCCAAAATTTCCCTTTTCTGTAATTTTTCAAAAATCATGAAAAGTTACAAAAACCACTTTTCCGAGTGAAAACAACACCGGGAAATTCAAAAATTGACTTTAAATTAAGCTCAGGAGTGATTTTCCCACTAACAAAAACACATTTTCGCTATTTTTTTCCAAAAAATTCCAAAAAAGATTTTTTTTCGAATTTTTCAAAAATCATGAAAAACCGCAGAAAAAAGATTTCCGAGTTAAAAAACGTTGAGAAGTTCGAATTTCCTATCAAAATTGACCCTAGAAGTGAATTTCGGCACCAAAATGTGAAAATTCAAAATTCGAAATCCTAGATTTTTTTTTTCCCTAAAAATCATGAAACAATTTAAAGGTGGGGGGACATGAAAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>306 195 172 80 67 65 37 25 21 20 12</canonical_bands>
                <polymorphic_bands>306 195 172 80 67 65 58 25 20 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACCATAAGTCTGAGAATAGTATGG</pcr_primer_p1>
		<pcr_primer_p2>GGTTTTTGTAACTTTTCATGATT</pcr_primer_p2>
		<pcr_amplicon_size>329</pcr_amplicon_size>
		<canonical_amplicon>AACCATAAGTCTGAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGAAATTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGCGAACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAAACATCGAAAATTCTCAATTTTCAATCGAAAATAACTATAAAAGTTGATTTATACAGTAAAATCGAAACAAATCACGAATTTTCGAAAAAATTCCAAAATTTCCCTTTTCTGTAATTTTTCAAAAATCATGAAAAGTTACAAAAACC</canonical_amplicon>
		<polymorphic_amplicon>AACCATAAGTCTGAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGAAATTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGCGAACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAAACATCGAAAATTCTCAATTTTCAATCRAAAATAACTATAAAAGTTGATTTATACAGTAAAATCGAAACAAATCACGAATTTTCGAAAAAATTCCAAAATTTCCCTTTTCTGTAATTTTTCAAAAATCATGAAAAGTTACAAAAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37686</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>39733</contig_pos>
        <strand></strand>
        <context>craaaataac[T/C]ataaaagttg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCTAGGGGTGAAAAACATCGAAAATTCTCAATTTTCAATCGAAAATAAC</left_flank>
        <right_flank>ATAAAAGTTGATTTATACAGTAAAATCGAAACAAATCACGAATTTTCGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTGTCTATTTTGAGTGTCAGACTTTTCTTTTAACCCTTTTTTTGAGCACTTACATCAAATCTTTAATCTCATCAACACTTCCCGAACAACAAATACGTTTGGGTGGTGATTGAGACCCATTCGCGTAGAATTGAAGACTTTTTGATTTTTGCATTTTCGATTTTTTTTGATTTATTCAGGACCCATTTGCTGTGATGTAAATCTTTTTTTTTTGAGATTCAAAGGATTACGGTAGAGAGAAAAATTAAAAAATCGGAAAATGAAAAAAAGAAGGTAAACCATAAGTCTGAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGAAATTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGCGAACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAAACATCGAAAATTCTCAATTTTCAATCGAAAATAACTATAAAAGTTGATTTATACAGTAAAATCGAAACAAATCACGAATTTTCGAAAAAATTCCAAAATTTCCCTTTTCTGTAATTTTTCAAAAATCATGAAAAGTTACAAAAACCACTTTTCCGAGTGAAAACAACACCGGGAAATTCAAAAATTGACTTTAAATTAAGCTCAGGAGTGATTTTCCCACTAACAAAAACACATTTTCGCTATTTTTTTCCAAAAAATTCCAAAAAAGATTTTTTTTCGAATTTTTCAAAAATCATGAAAAACCGCAGAAAAAAGATTTCCGAGTTAAAAAACGTTGAGAAGTTCGAATTTCCTATCAAAATTGACCCTAGAAGTGAATTTCGGCACCAAAATGTGAAAATTCAAAATTCGAAATCCTAGATTTTTTTTTTCCCTAAAAATCATGAAACAATTTAAAGGTGGGGGGACATGAAAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGG</canonical>
            <polymorphic>ATTTTTTGTCTATTTTGAGTGTCAGACTTTTCTTTTAACCCTTTTTTTGAGCACTTACATCAAATCTTTAATCTCATCAACACTTCCCGAACAACAAATACGTTTGGGTGGTGATTGAGACCCATTCGCGTAGAATTGAAGACTTTTTGATTTTTGCATTTTCGATTTTTTTTGATTTATTCAGGACCCATTTGCTGTGATGTAAATCTTTTTTTTTTGAGATTCAAAGGATTACGGTAGAGAGAAAAATTAAAAAATCGGAAAATGAAAAAAAGAAGGTAAACCATAAGTCTGAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGAAATTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGCGAACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAAACATCGAAAATTCTCAATTTTCAATCGAAAATAACYATAAAAGTTGATTTATACAGTAAAATCGAAACAAATCACGAATTTTCGAAAAAATTCCAAAATTTCCCTTTTCTGTAATTTTTCAAAAATCATGAAAAGTTACAAAAACCACTTTTCCGAGTGAAAACAACACCGGGAAATTCAAAAATTGACTTTAAATTAAGCTCAGGAGTGATTTTCCCACTAACAAAAACACATTTTCGCTATTTTTTTCCAAAAAATTCCAAAAAAGATTTTTTTTCGAATTTTTCAAAAATCATGAAAAACCGCAGAAAAAAGATTTCCGAGTTAAAAAACGTTGAGAAGTTCGAATTTCCTATCAAAATTGACCCTAGAAGTGAATTTCGGCACCAAAATGTGAAAATTCAAAATTCGAAATCCTAGATTTTTTTTTTCCCTAAAAATCATGAAACAATTTAAAGGTGGGGGGACATGAAAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACCATAAGTCTGAGAATAGTATGG</pcr_primer_p1>
		<pcr_primer_p2>GGTTTTTGTAACTTTTCATGATT</pcr_primer_p2>
		<pcr_amplicon_size>329</pcr_amplicon_size>
		<canonical_amplicon>AACCATAAGTCTGAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGAAATTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGCGAACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAAACATCGAAAATTCTCAATTTTCAATCGAAAATAACTATAAAAGTTGATTTATACAGTAAAATCGAAACAAATCACGAATTTTCGAAAAAATTCCAAAATTTCCCTTTTCTGTAATTTTTCAAAAATCATGAAAAGTTACAAAAACC</canonical_amplicon>
		<polymorphic_amplicon>AACCATAAGTCTGAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGAAATTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGCGAACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAAACATCGAAAATTCTCAATTTTCAATCGAAAATAACYATAAAAGTTGATTTATACAGTAAAATCGAAACAAATCACGAATTTTCGAAAAAATTCCAAAATTTCCCTTTTCTGTAATTTTTCAAAAATCATGAAAAGTTACAAAAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37687</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>39771</contig_pos>
        <strand></strand>
        <context>gaaacaaatc[A/C]cgaattttcg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCGAAAATAACTATAAAAGTTGATTTATACAGTAAAATCGAAACAAATC</left_flank>
        <right_flank>CGAATTTTCGAAAAAATTCCAAAATTTCCCTTTTCTGTAATTTTTCAAAA</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCTTTTTTTGAGCACTTACATCAAATCTTTAATCTCATCAACACTTCCCGAACAACAAATACGTTTGGGTGGTGATTGAGACCCATTCGCGTAGAATTGAAGACTTTTTGATTTTTGCATTTTCGATTTTTTTTGATTTATTCAGGACCCATTTGCTGTGATGTAAATCTTTTTTTTTTGAGATTCAAAGGATTACGGTAGAGAGAAAAATTAAAAAATCGGAAAATGAAAAAAAGAAGGTAAACCATAAGTCTGAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGAAATTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGCGAACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAAACATCGAAAATTCTCAATTTTCAATCGAAAATAACTATAAAAGTTGATTTATACAGTAAAATCGAAACAAATCACGAATTTTCGAAAAAATTCCAAAATTTCCCTTTTCTGTAATTTTTCAAAAATCATGAAAAGTTACAAAAACCACTTTTCCGAGTGAAAACAACACCGGGAAATTCAAAAATTGACTTTAAATTAAGCTCAGGAGTGATTTTCCCACTAACAAAAACACATTTTCGCTATTTTTTTCCAAAAAATTCCAAAAAAGATTTTTTTTCGAATTTTTCAAAAATCATGAAAAACCGCAGAAAAAAGATTTCCGAGTTAAAAAACGTTGAGAAGTTCGAATTTCCTATCAAAATTGACCCTAGAAGTGAATTTCGGCACCAAAATGTGAAAATTCAAAATTCGAAATCCTAGATTTTTTTTTTCCCTAAAAATCATGAAACAATTTAAAGGTGGGGGGACATGAAAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGAGTGCGGCGCCGCTACCGACTGAGCCA</canonical>
            <polymorphic>CCCTTTTTTTGAGCACTTACATCAAATCTTTAATCTCATCAACACTTCCCGAACAACAAATACGTTTGGGTGGTGATTGAGACCCATTCGCGTAGAATTGAAGACTTTTTGATTTTTGCATTTTCGATTTTTTTTGATTTATTCAGGACCCATTTGCTGTGATGTAAATCTTTTTTTTTTGAGATTCAAAGGATTACGGTAGAGAGAAAAATTAAAAAATCGGAAAATGAAAAAAAGAAGGTAAACCATAAGTCTGAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGAAATTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGCGAACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAAACATCGAAAATTCTCAATTTTCAATCGAAAATAACTATAAAAGTTGATTTATACAGTAAAATCGAAACAAATCMCGAATTTTCGAAAAAATTCCAAAATTTCCCTTTTCTGTAATTTTTCAAAAATCATGAAAAGTTACAAAAACCACTTTTCCGAGTGAAAACAACACCGGGAAATTCAAAAATTGACTTTAAATTAAGCTCAGGAGTGATTTTCCCACTAACAAAAACACATTTTCGCTATTTTTTTCCAAAAAATTCCAAAAAAGATTTTTTTTCGAATTTTTCAAAAATCATGAAAAACCGCAGAAAAAAGATTTCCGAGTTAAAAAACGTTGAGAAGTTCGAATTTCCTATCAAAATTGACCCTAGAAGTGAATTTCGGCACCAAAATGTGAAAATTCAAAATTCGAAATCCTAGATTTTTTTTTTCCCTAAAAATCATGAAACAATTTAAAGGTGGGGGGACATGAAAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGAGTGCGGCGCCGCTACCGACTGAGCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>145 128 91 86 78 73 71 65 42 29 28 23 22 20 19 15 12 12 10 10 9 9 3</canonical_bands>
                <polymorphic_bands>151 145 128 91 86 71 65 42 29 28 23 22 20 19 15 12 12 10 10 9 9 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACCATAAGTCTGAGAATAGTATGG</pcr_primer_p1>
		<pcr_primer_p2>GGTTTTTGTAACTTTTCATGATT</pcr_primer_p2>
		<pcr_amplicon_size>329</pcr_amplicon_size>
		<canonical_amplicon>AACCATAAGTCTGAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGAAATTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGCGAACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAAACATCGAAAATTCTCAATTTTCAATCGAAAATAACTATAAAAGTTGATTTATACAGTAAAATCGAAACAAATCACGAATTTTCGAAAAAATTCCAAAATTTCCCTTTTCTGTAATTTTTCAAAAATCATGAAAAGTTACAAAAACC</canonical_amplicon>
		<polymorphic_amplicon>AACCATAAGTCTGAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGAAATTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGCGAACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAAACATCGAAAATTCTCAATTTTCAATCGAAAATAACTATAAAAGTTGATTTATACAGTAAAATCGAAACAAATCMCGAATTTTCGAAAAAATTCCAAAATTTCCCTTTTCTGTAATTTTTCAAAAATCATGAAAAGTTACAAAAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37688</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>39906</contig_pos>
        <strand>+</strand>
        <context>AGCTCAGGAG[G/T]GATTTTCCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAAACAACACCGGGAAATTCAAAAATTGACTTTAAATTAAGCTCAGGAG</left_flank>
        <right_flank>GATTTTCCCACTAACAAAAACACATTTTCGCTATTTTTTTCCAAAAAATT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTATTCAGGACCCATTTGCTGTGATGTAAATCTTTTTTTTTTGAGATTCAAAGGATTACGGTAGAGAGAAAAATTAAAAAATCGGAAAATGAAAAAAAGAAGGTAAACCATAAGTCTGAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGAAATTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGCGAACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAAACATCGAAAATTCTCAATTTTCAATCGAAAATAACTATAAAAGTTGATTTATACAGTAAAATCGAAACAAATCACGAATTTTCGAAAAAATTCCAAAATTTCCCTTTTCTGTAATTTTTCAAAAATCATGAAAAGTTACAAAAACCACTTTTCCGAGTGAAAACAACACCGGGAAATTCAAAAATTGACTTTAAATTAAGCTCAGGAGTGATTTTCCCACTAACAAAAACACATTTTCGCTATTTTTTTCCAAAAAATTCCAAAAAAGATTTTTTTTCGAATTTTTCAAAAATCATGAAAAACCGCAGAAAAAAGATTTCCGAGTTAAAAAACGTTGAGAAGTTCGAATTTCCTATCAAAATTGACCCTAGAAGTGAATTTCGGCACCAAAATGTGAAAATTCAAAATTCGAAATCCTAGATTTTTTTTTTCCCTAAAAATCATGAAACAATTTAAAGGTGGGGGGACATGAAAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGAGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAGAAAAACTACGAAAAATC</canonical>
            <polymorphic>GATTTATTCAGGACCCATTTGCTGTGATGTAAATCTTTTTTTTTTGAGATTCAAAGGATTACGGTAGAGAGAAAAATTAAAAAATCGGAAAATGAAAAAAAGAAGGTAAACCATAAGTCTGAGAATAGTATGGATTAAAAATTCGCGTTTTACACAAAAATCTGGTCTAGAAATTTGATTTTTTGTCAATAAATCCATTTTTCCAGATTTTTCGGATTACTGTAGGTTGGAAAAGTACGCGAACACTAAAATCTAGGAAGTAGTGCAGAAAGATGTTTCTAGGGGTGAAAAACATCGAAAATTCTCAATTTTCAATCGAAAATAACTATAAAAGTTGATTTATACAGTAAAATCGAAACAAATCACGAATTTTCGAAAAAATTCCAAAATTTCCCTTTTCTGTAATTTTTCAAAAATCATGAAAAGTTACAAAAACCACTTTTCCGAGTGAAAACAACACCGGGAAATTCAAAAATTGACTTTAAATTAAGCTCAGGAGKGATTTTCCCACTAACAAAAACACATTTTCGCTATTTTTTTCCAAAAAATTCCAAAAAAGATTTTTTTTCGAATTTTTCAAAAATCATGAAAAACCGCAGAAAAAAGATTTCCGAGTTAAAAAACGTTGAGAAGTTCGAATTTCCTATCAAAATTGACCCTAGAAGTGAATTTCGGCACCAAAATGTGAAAATTCAAAATTCGAAATCCTAGATTTTTTTTTTCCCTAAAAATCATGAAACAATTTAAAGGTGGGGGGACATGAAAAAAAAATAATGTTCTCGAAATTCCGTTCAAAGATGCCCCTCGAGGAGTTGAACTTGTGAGGGCGATGATTGAGAGTGCGGCGCCGCTACCGACTGAGCCACGCGGGCAAAGAGAAAGCGCACGCCCGATTGCATACATAAAGGCGAGGACGACAGCTGTACGCAGAGTGACATTAAGCGTTGTACACCGTGACGGTAGAATGCATACTCTAGCTACAGAAAAACTACGAAAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>145 128 91 78 73 71 65 48 44 42 26 23 22 21 20 19 17 12 12 10 10 9 9 5</canonical_bands>
                <polymorphic_bands>145 128 91 78 73 71 65 51 48 44 26 23 22 21 20 19 17 12 12 10 10 9 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATGAAAAGTTACAAAAACCACT</pcr_primer_p1>
		<pcr_primer_p2>CACTTCTAGGGTCAATTTTGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATGAAAAGTTACAAAAACCACTTTTCCGAGTGAAAACAACACCGGGAAATTCAAAAATTGACTTTAAATTAAGCTCAGGAGTGATTTTCCCACTAACAAAAACACATTTTCGCTATTTTTTTCCAAAAAATTCCAAAAAAGATTTTTTTTCGAATTTTTCAAAAATCATGAAAAACCGCAGAAAAAAGATTTCCGAGTTAAAAAACGTTGAGAAGTTCGAATTTCCTATCAAAATTGACCCTAGAAGTG</canonical_amplicon>
		<polymorphic_amplicon>CATGAAAAGTTACAAAAACCACTTTTCCGAGTGAAAACAACACCGGGAAATTCAAAAATTGACTTTAAATTAAGCTCAGGAGKGATTTTCCCACTAACAAAAACACATTTTCGCTATTTTTTTCCAAAAAATTCCAAAAAAGATTTTTTTTCGAATTTTTCAAAAATCATGAAAAACCGCAGAAAAAAGATTTCCGAGTTAAAAAACGTTGAGAAGTTCGAATTTCCTATCAAAATTGACCCTAGAAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37700</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>46113</contig_pos>
        <strand></strand>
        <context>agattctcct[G/A]gattttagct</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAAAACCTGAAAATCTTTATAGTTTTCAACTTAAAACATAAGATTCTCCT</left_flank>
        <right_flank>GATTTTAGCTTCAAAATGAGTATAAACACGACTAGTTTTGGAAAATTTTG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTCACACTACAAAGTACAAAATGTCCCGTTTTTTTTTTTTTGAAAAAAATTGCGTTGTCATTAAACGAATTCACAGATTGACGTAAGGATGTACAATTCTCATTTACATACGGTTAATAATGCACAAGACGACGTTTTCCCTTCTCTTTTTTCCAGAATTTTCGATTTTTTGTTCAATTCTGATTTTTTTGCACAGAAAAAAAAGAGCAAAAACTTTGCTCCGGGGCAAACATTTTCTCACATTTTTAATAAAACATTTTTTGCCAAAAAAAAAGGTGCTCACTGGATATAAAAAATGCGGCCATTCTCGAGAACACACAGATCACACTCGTCCACCAGGTTTGGATTCATTGAATTGTACTCCGAGACGACGTCTTCTGAAAAAAAAATTTGGAAATTTTTGTTGAGAAATTGAAAAAAAAAATTTTCTAAAAATGATATTTCTCAAAACCTGAAAATCTTTATAGTTTTCAACTTAAAACATAAGATTCTCCTGGATTTTAGCTTCAAAATGAGTATAAACACGACTAGTTTTGGAAAATTTTGAAATTTTTTGGGTCCCACCACGAAAACTGAAAATTTTTAAATTTTATAGATTCTAGTCGTGTTCAGGGCTCATTTCAAAGCAGTTTTTGAACCAAGTTAAAGAAAAAAAACTTTTATCAAGTGTTCTCCAAAAATGAGAAAGTTACAGTACTTTTCGTTATCATAAATGGTATGATAAACGTAAAACTACCATAACTCGGCCCACAACGTTCCGAACTCGAAAATTTTCAAAATTTTGAGTTTGTTATACAAAGTGCTCTTAAATGAATATAAACGCGACTAGTTTTGAAAATTTTTTTTGCAAATTTTGCAAAATTTTTTGGTCCCACCACGAAAATTGAAATTTTCAAGTTTCATGAATTCTAGTCGTGTTCATACTCATTTTGAAGAATTTTAAAAGAGTGTTCGAAAAAATCACTTTCAGCCAGATTTCTCCAGAAATGACAATAC</canonical>
            <polymorphic>ATTTTTCACACTACAAAGTACAAAATGTCCCGTTTTTTTTTTTTTGAAAAAAATTGCGTTGTCATTAAACGAATTCACAGATTGACGTAAGGATGTACAATTCTCATTTACATACGGTTAATAATGCACAAGACGACGTTTTCCCTTCTCTTTTTTCCAGAATTTTCGATTTTTTGTTCAATTCTGATTTTTTTGCACAGAAAAAAAAGAGCAAAAACTTTGCTCCGGGGCAAACATTTTCTCACATTTTTAATAAAACATTTTTTGCCAAAAAAAAAGGTGCTCACTGGATATAAAAAATGCGGCCATTCTCGAGAACACACAGATCACACTCGTCCACCAGGTTTGGATTCATTGAATTGTACTCCGAGACGACGTCTTCTGAAAAAAAAATTTGGAAATTTTTGTTGAGAAATTGAAAAAAAAAATTTTCTAAAAATGATATTTCTCAAAACCTGAAAATCTTTATAGTTTTCAACTTAAAACATAAGATTCTCCTRGATTTTAGCTTCAAAATGAGTATAAACACGACTAGTTTTGGAAAATTTTGAAATTTTTTGGGTCCCACCACGAAAACTGAAAATTTTTAAATTTTATAGATTCTAGTCGTGTTCAGGGCTCATTTCAAAGCAGTTTTTGAACCAAGTTAAAGAAAAAAAACTTTTATCAAGTGTTCTCCAAAAATGAGAAAGTTACAGTACTTTTCGTTATCATAAATGGTATGATAAACGTAAAACTACCATAACTCGGCCCACAACGTTCCGAACTCGAAAATTTTCAAAATTTTGAGTTTGTTATACAAAGTGCTCTTAAATGAATATAAACGCGACTAGTTTTGAAAATTTTTTTTGCAAATTTTGCAAAATTTTTTGGTCCCACCACGAAAATTGAAATTTTCAAGTTTCATGAATTCTAGTCGTGTTCATACTCATTTTGAAGAATTTTAAAAGAGTGTTCGAAAAAATCACTTTCAGCCAGATTTCTCCAGAAATGACAATAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>502 226 157 115</canonical_bands>
                <polymorphic_bands>659 226 115</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>502 341 157</canonical_bands>
                <polymorphic_bands>659 341</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTGGAAATTTTTGTTGAGAA</pcr_primer_p1>
		<pcr_primer_p2>TTATGAGGGAATTTTAGAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>951</pcr_amplicon_size>
		<canonical_amplicon>ATTTGGAAATTTTTGTTGAGAAATTGAAAAAAAAAATTTTCTAAAAATGATATTTCTCAAAACCTGAAAATCTTTATAGTTTTCAACTTAAAACATAAGATTCTCCTGGATTTTAGCTTCAAAATGAGTAT</canonical_amplicon>
		<polymorphic_amplicon>ATTTGGAAATTTTTGTTGAGAAATTGAAAAAAAAAATTTTCTAAAAATGATATTTCTCAAAACCTGAAAATCTTTATAGTTTTCAACTTAAAACATAAGATTCTCCTRGATTTTAGCTTCAAAATGAGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37701</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>46301</contig_pos>
        <strand></strand>
        <context>ccaaaaatga[G/A]aaarttacag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGAACCAAGTTAAAGAAAAAAAACTTTTATCAAGTGTTCTCCAAAAATGA</left_flank>
        <right_flank>AAAGTTACAGTACTTTTCGTTATCATAAATGGTATGATAAACGTAAAACT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTGCACAGAAAAAAAAGAGCAAAAACTTTGCTCCGGGGCAAACATTTTCTCACATTTTTAATAAAACATTTTTTGCCAAAAAAAAAGGTGCTCACTGGATATAAAAAATGCGGCCATTCTCGAGAACACACAGATCACACTCGTCCACCAGGTTTGGATTCATTGAATTGTACTCCGAGACGACGTCTTCTGAAAAAAAAATTTGGAAATTTTTGTTGAGAAATTGAAAAAAAAAATTTTCTAAAAATGATATTTCTCAAAACCTGAAAATCTTTATAGTTTTCAACTTAAAACATAAGATTCTCCTGGATTTTAGCTTCAAAATGAGTATAAACACGACTAGTTTTGGAAAATTTTGAAATTTTTTGGGTCCCACCACGAAAACTGAAAATTTTTAAATTTTATAGATTCTAGTCGTGTTCAGGGCTCATTTCAAAGCAGTTTTTGAACCAAGTTAAAGAAAAAAAACTTTTATCAAGTGTTCTCCAAAAATGAGAAAGTTACAGTACTTTTCGTTATCATAAATGGTATGATAAACGTAAAACTACCATAACTCGGCCCACAACGTTCCGAACTCGAAAATTTTCAAAATTTTGAGTTTGTTATACAAAGTGCTCTTAAATGAATATAAACGCGACTAGTTTTGAAAATTTTTTTTGCAAATTTTGCAAAATTTTTTGGTCCCACCACGAAAATTGAAATTTTCAAGTTTCATGAATTCTAGTCGTGTTCATACTCATTTTGAAGAATTTTAAAAGAGTGTTCGAAAAAATCACTTTCAGCCAGATTTCTCCAGAAATGACAATACTACAGTACTTGTAATACATTTTAGGTAAAGACAGAAACGTAAAACTACCGTGACTCCGCTCAAACTGTCTTAAATTCAAAAGTCCTTAAATTTTTGAATTTGTCTTGGTGAGAGCTTCAAAATGAGTATAAACACGACTAGGTTTTCTGAACTTCGATTTTTTCGAATTTCCCCCTAGACCCCCTCTG</canonical>
            <polymorphic>TTTTTTGCACAGAAAAAAAAGAGCAAAAACTTTGCTCCGGGGCAAACATTTTCTCACATTTTTAATAAAACATTTTTTGCCAAAAAAAAAGGTGCTCACTGGATATAAAAAATGCGGCCATTCTCGAGAACACACAGATCACACTCGTCCACCAGGTTTGGATTCATTGAATTGTACTCCGAGACGACGTCTTCTGAAAAAAAAATTTGGAAATTTTTGTTGAGAAATTGAAAAAAAAAATTTTCTAAAAATGATATTTCTCAAAACCTGAAAATCTTTATAGTTTTCAACTTAAAACATAAGATTCTCCTGGATTTTAGCTTCAAAATGAGTATAAACACGACTAGTTTTGGAAAATTTTGAAATTTTTTGGGTCCCACCACGAAAACTGAAAATTTTTAAATTTTATAGATTCTAGTCGTGTTCAGGGCTCATTTCAAAGCAGTTTTTGAACCAAGTTAAAGAAAAAAAACTTTTATCAAGTGTTCTCCAAAAATGARAAAGTTACAGTACTTTTCGTTATCATAAATGGTATGATAAACGTAAAACTACCATAACTCGGCCCACAACGTTCCGAACTCGAAAATTTTCAAAATTTTGAGTTTGTTATACAAAGTGCTCTTAAATGAATATAAACGCGACTAGTTTTGAAAATTTTTTTTGCAAATTTTGCAAAATTTTTTGGTCCCACCACGAAAATTGAAATTTTCAAGTTTCATGAATTCTAGTCGTGTTCATACTCATTTTGAAGAATTTTAAAAGAGTGTTCGAAAAAATCACTTTCAGCCAGATTTCTCCAGAAATGACAATACTACAGTACTTGTAATACATTTTAGGTAAAGACAGAAACGTAAAACTACCGTGACTCCGCTCAAACTGTCTTAAATTCAAAAGTCCTTAAATTTTTGAATTTGTCTTGGTGAGAGCTTCAAAATGAGTATAAACACGACTAGGTTTTCTGAACTTCGATTTTTTCGAATTTCCCCCTAGACCCCCTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGGAAATTTTTGTTGAGAA</pcr_primer_p1>
		<pcr_primer_p2>TTATGAGGGAATTTTAGAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>951</pcr_amplicon_size>
		<canonical_amplicon>ATTTGGAAATTTTTGTTGAGAAATTGAAAAAAAAAATTTTCTAAAAATGATATTTCTCAAAACCTGAAAATCTTTATAGTTTTCAACTTAAAACATAAGATTCTCCTGGATTTTAGCTTCAAAATGAGTATAAACACGACTAGTTTTGGAAAATTTTGAAATTTTTTGGGTCCCACCACGAAAACTGAAAATTTTTAAATTTTATAGATTCTAGTCGTGTTCAGGGCTCATTTCAAAGCAGTTTTTGAACCAAGTTAAAGAAAAAAAACTTTTATCAAGTGTTCTCCAAAAATGAGAAAGTTACAGTACTTTTCGTTAT</canonical_amplicon>
		<polymorphic_amplicon>ATTTGGAAATTTTTGTTGAGAAATTGAAAAAAAAAATTTTCTAAAAATGATATTTCTCAAAACCTGAAAATCTTTATAGTTTTCAACTTAAAACATAAGATTCTCCTGGATTTTAGCTTCAAAATGAGTATAAACACGACTAGTTTTGGAAAATTTTGAAATTTTTTGGGTCCCACCACGAAAACTGAAAATTTTTAAATTTTATAGATTCTAGTCGTGTTCAGGGCTCATTTCAAAGCAGTTTTTGAACCAAGTTAAAGAAAAAAAACTTTTATCAAGTGTTCTCCAAAAATGARAAAGTTACAGTACTTTTCGTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37702</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>46305</contig_pos>
        <strand></strand>
        <context>aaatgaraaa[G/A]ttacagtact</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CCAAGTTAAAGAAAAAAAACTTTTATCAAGTGTTCTCCAAAAATGAGAAA</left_flank>
        <right_flank>TTACAGTACTTTTCGTTATCATAAATGGTATGATAAACGTAAAACTACCA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCACAGAAAAAAAAGAGCAAAAACTTTGCTCCGGGGCAAACATTTTCTCACATTTTTAATAAAACATTTTTTGCCAAAAAAAAAGGTGCTCACTGGATATAAAAAATGCGGCCATTCTCGAGAACACACAGATCACACTCGTCCACCAGGTTTGGATTCATTGAATTGTACTCCGAGACGACGTCTTCTGAAAAAAAAATTTGGAAATTTTTGTTGAGAAATTGAAAAAAAAAATTTTCTAAAAATGATATTTCTCAAAACCTGAAAATCTTTATAGTTTTCAACTTAAAACATAAGATTCTCCTGGATTTTAGCTTCAAAATGAGTATAAACACGACTAGTTTTGGAAAATTTTGAAATTTTTTGGGTCCCACCACGAAAACTGAAAATTTTTAAATTTTATAGATTCTAGTCGTGTTCAGGGCTCATTTCAAAGCAGTTTTTGAACCAAGTTAAAGAAAAAAAACTTTTATCAAGTGTTCTCCAAAAATGAGAAAGTTACAGTACTTTTCGTTATCATAAATGGTATGATAAACGTAAAACTACCATAACTCGGCCCACAACGTTCCGAACTCGAAAATTTTCAAAATTTTGAGTTTGTTATACAAAGTGCTCTTAAATGAATATAAACGCGACTAGTTTTGAAAATTTTTTTTGCAAATTTTGCAAAATTTTTTGGTCCCACCACGAAAATTGAAATTTTCAAGTTTCATGAATTCTAGTCGTGTTCATACTCATTTTGAAGAATTTTAAAAGAGTGTTCGAAAAAATCACTTTCAGCCAGATTTCTCCAGAAATGACAATACTACAGTACTTGTAATACATTTTAGGTAAAGACAGAAACGTAAAACTACCGTGACTCCGCTCAAACTGTCTTAAATTCAAAAGTCCTTAAATTTTTGAATTTGTCTTGGTGAGAGCTTCAAAATGAGTATAAACACGACTAGGTTTTCTGAACTTCGATTTTTTCGAATTTCCCCCTAGACCCCCTCTGAATA</canonical>
            <polymorphic>TTGCACAGAAAAAAAAGAGCAAAAACTTTGCTCCGGGGCAAACATTTTCTCACATTTTTAATAAAACATTTTTTGCCAAAAAAAAAGGTGCTCACTGGATATAAAAAATGCGGCCATTCTCGAGAACACACAGATCACACTCGTCCACCAGGTTTGGATTCATTGAATTGTACTCCGAGACGACGTCTTCTGAAAAAAAAATTTGGAAATTTTTGTTGAGAAATTGAAAAAAAAAATTTTCTAAAAATGATATTTCTCAAAACCTGAAAATCTTTATAGTTTTCAACTTAAAACATAAGATTCTCCTGGATTTTAGCTTCAAAATGAGTATAAACACGACTAGTTTTGGAAAATTTTGAAATTTTTTGGGTCCCACCACGAAAACTGAAAATTTTTAAATTTTATAGATTCTAGTCGTGTTCAGGGCTCATTTCAAAGCAGTTTTTGAACCAAGTTAAAGAAAAAAAACTTTTATCAAGTGTTCTCCAAAAATGAGAAARTTACAGTACTTTTCGTTATCATAAATGGTATGATAAACGTAAAACTACCATAACTCGGCCCACAACGTTCCGAACTCGAAAATTTTCAAAATTTTGAGTTTGTTATACAAAGTGCTCTTAAATGAATATAAACGCGACTAGTTTTGAAAATTTTTTTTGCAAATTTTGCAAAATTTTTTGGTCCCACCACGAAAATTGAAATTTTCAAGTTTCATGAATTCTAGTCGTGTTCATACTCATTTTGAAGAATTTTAAAAGAGTGTTCGAAAAAATCACTTTCAGCCAGATTTCTCCAGAAATGACAATACTACAGTACTTGTAATACATTTTAGGTAAAGACAGAAACGTAAAACTACCGTGACTCCGCTCAAACTGTCTTAAATTCAAAAGTCCTTAAATTTTTGAATTTGTCTTGGTGAGAGCTTCAAAATGAGTATAAACACGACTAGGTTTTCTGAACTTCGATTTTTTCGAATTTCCCCCTAGACCCCCTCTGAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>499 358 143</canonical_bands>
                <polymorphic_bands>857 143</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTGGAAATTTTTGTTGAGAA</pcr_primer_p1>
		<pcr_primer_p2>TTATGAGGGAATTTTAGAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>951</pcr_amplicon_size>
		<canonical_amplicon>ATTTGGAAATTTTTGTTGAGAAATTGAAAAAAAAAATTTTCTAAAAATGATATTTCTCAAAACCTGAAAATCTTTATAGTTTTCAACTTAAAACATAAGATTCTCCTGGATTTTAGCTTCAAAATGAGTATAAACACGACTAGTTTTGGAAAATTTTGAAATTTTTTGGGTCCCACCACGAAAACTGAAAATTTTTAAATTTTATAGATTCTAGTCGTGTTCAGGGCTCATTTCAAAGCAGTTTTTGAACCAAGTTAAAGAAAAAAAACTTTTATCAAGTGTTCTCCAAAAATGAGAAAGTTACAGTACTTTTCGTTATCATA</canonical_amplicon>
		<polymorphic_amplicon>ATTTGGAAATTTTTGTTGAGAAATTGAAAAAAAAAATTTTCTAAAAATGATATTTCTCAAAACCTGAAAATCTTTATAGTTTTCAACTTAAAACATAAGATTCTCCTGGATTTTAGCTTCAAAATGAGTATAAACACGACTAGTTTTGGAAAATTTTGAAATTTTTTGGGTCCCACCACGAAAACTGAAAATTTTTAAATTTTATAGATTCTAGTCGTGTTCAGGGCTCATTTCAAAGCAGTTTTTGAACCAAGTTAAAGAAAAAAAACTTTTATCAAGTGTTCTCCAAAAATGAGAAARTTACAGTACTTTTCGTTATCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37703</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>46319</contig_pos>
        <strand></strand>
        <context>cagtactttt[C/G]gttatcataa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAAACTTTTATCAAGTGTTCTCCAAAAATGAGAAAGTTACAGTACTTTT</left_flank>
        <right_flank>GTTATCATAAATGGTATGATAAACGTAAAACTACCATAACTCGGCCCACA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAGCAAAAACTTTGCTCCGGGGCAAACATTTTCTCACATTTTTAATAAAACATTTTTTGCCAAAAAAAAAGGTGCTCACTGGATATAAAAAATGCGGCCATTCTCGAGAACACACAGATCACACTCGTCCACCAGGTTTGGATTCATTGAATTGTACTCCGAGACGACGTCTTCTGAAAAAAAAATTTGGAAATTTTTGTTGAGAAATTGAAAAAAAAAATTTTCTAAAAATGATATTTCTCAAAACCTGAAAATCTTTATAGTTTTCAACTTAAAACATAAGATTCTCCTGGATTTTAGCTTCAAAATGAGTATAAACACGACTAGTTTTGGAAAATTTTGAAATTTTTTGGGTCCCACCACGAAAACTGAAAATTTTTAAATTTTATAGATTCTAGTCGTGTTCAGGGCTCATTTCAAAGCAGTTTTTGAACCAAGTTAAAGAAAAAAAACTTTTATCAAGTGTTCTCCAAAAATGAGAAAGTTACAGTACTTTTCGTTATCATAAATGGTATGATAAACGTAAAACTACCATAACTCGGCCCACAACGTTCCGAACTCGAAAATTTTCAAAATTTTGAGTTTGTTATACAAAGTGCTCTTAAATGAATATAAACGCGACTAGTTTTGAAAATTTTTTTTGCAAATTTTGCAAAATTTTTTGGTCCCACCACGAAAATTGAAATTTTCAAGTTTCATGAATTCTAGTCGTGTTCATACTCATTTTGAAGAATTTTAAAAGAGTGTTCGAAAAAATCACTTTCAGCCAGATTTCTCCAGAAATGACAATACTACAGTACTTGTAATACATTTTAGGTAAAGACAGAAACGTAAAACTACCGTGACTCCGCTCAAACTGTCTTAAATTCAAAAGTCCTTAAATTTTTGAATTTGTCTTGGTGAGAGCTTCAAAATGAGTATAAACACGACTAGGTTTTCTGAACTTCGATTTTTTCGAATTTCCCCCTAGACCCCCTCTGAATAATCGAAAATTTCAA</canonical>
            <polymorphic>AAGAGCAAAAACTTTGCTCCGGGGCAAACATTTTCTCACATTTTTAATAAAACATTTTTTGCCAAAAAAAAAGGTGCTCACTGGATATAAAAAATGCGGCCATTCTCGAGAACACACAGATCACACTCGTCCACCAGGTTTGGATTCATTGAATTGTACTCCGAGACGACGTCTTCTGAAAAAAAAATTTGGAAATTTTTGTTGAGAAATTGAAAAAAAAAATTTTCTAAAAATGATATTTCTCAAAACCTGAAAATCTTTATAGTTTTCAACTTAAAACATAAGATTCTCCTGGATTTTAGCTTCAAAATGAGTATAAACACGACTAGTTTTGGAAAATTTTGAAATTTTTTGGGTCCCACCACGAAAACTGAAAATTTTTAAATTTTATAGATTCTAGTCGTGTTCAGGGCTCATTTCAAAGCAGTTTTTGAACCAAGTTAAAGAAAAAAAACTTTTATCAAGTGTTCTCCAAAAATGAGAAAGTTACAGTACTTTTSGTTATCATAAATGGTATGATAAACGTAAAACTACCATAACTCGGCCCACAACGTTCCGAACTCGAAAATTTTCAAAATTTTGAGTTTGTTATACAAAGTGCTCTTAAATGAATATAAACGCGACTAGTTTTGAAAATTTTTTTTGCAAATTTTGCAAAATTTTTTGGTCCCACCACGAAAATTGAAATTTTCAAGTTTCATGAATTCTAGTCGTGTTCATACTCATTTTGAAGAATTTTAAAAGAGTGTTCGAAAAAATCACTTTCAGCCAGATTTCTCCAGAAATGACAATACTACAGTACTTGTAATACATTTTAGGTAAAGACAGAAACGTAAAACTACCGTGACTCCGCTCAAACTGTCTTAAATTCAAAAGTCCTTAAATTTTTGAATTTGTCTTGGTGAGAGCTTCAAAATGAGTATAAACACGACTAGGTTTTCTGAACTTCGATTTTTTCGAATTTCCCCCTAGACCCCCTCTGAATAATCGAAAATTTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGGAAATTTTTGTTGAGAA</pcr_primer_p1>
		<pcr_primer_p2>TTATGAGGGAATTTTAGAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>951</pcr_amplicon_size>
		<canonical_amplicon>ATTTGGAAATTTTTGTTGAGAAATTGAAAAAAAAAATTTTCTAAAAATGATATTTCTCAAAACCTGAAAATCTTTATAGTTTTCAACTTAAAACATAAGATTCTCCTGGATTTTAGCTTCAAAATGAGTATAAACACGACTAGTTTTGGAAAATTTTGAAATTTTTTGGGTCCCACCACGAAAACTGAAAATTTTTAAATTTTATAGATTCTAGTCGTGTTCAGGGCTCATTTCAAAGCAGTTTTTGAACCAAGTTAAAGAAAAAAAACTTTTATCAAGTGTTCTCCAAAAATGAGAAAGTTACAGTACTTTTCGTTATCATAAATGGTATGATAAA</canonical_amplicon>
		<polymorphic_amplicon>ATTTGGAAATTTTTGTTGAGAAATTGAAAAAAAAAATTTTCTAAAAATGATATTTCTCAAAACCTGAAAATCTTTATAGTTTTCAACTTAAAACATAAGATTCTCCTGGATTTTAGCTTCAAAATGAGTATAAACACGACTAGTTTTGGAAAATTTTGAAATTTTTTGGGTCCCACCACGAAAACTGAAAATTTTTAAATTTTATAGATTCTAGTCGTGTTCAGGGCTCATTTCAAAGCAGTTTTTGAACCAAGTTAAAGAAAAAAAACTTTTATCAAGTGTTCTCCAAAAATGAGAAAGTTACAGTACTTTTSGTTATCATAAATGGTATGATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37704</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>46355</contig_pos>
        <strand></strand>
        <context>taaaactacc[A/G]taactcggcc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTACAGTACTTTTCGTTATCATAAATGGTATGATAAACGTAAAACTACC</left_flank>
        <right_flank>TAACTCGGCCCACAACGTTCCGAACTCGAAAATTTTCAAAATTTTGAGTT</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACATTTTTAATAAAACATTTTTTGCCAAAAAAAAAGGTGCTCACTGGATATAAAAAATGCGGCCATTCTCGAGAACACACAGATCACACTCGTCCACCAGGTTTGGATTCATTGAATTGTACTCCGAGACGACGTCTTCTGAAAAAAAAATTTGGAAATTTTTGTTGAGAAATTGAAAAAAAAAATTTTCTAAAAATGATATTTCTCAAAACCTGAAAATCTTTATAGTTTTCAACTTAAAACATAAGATTCTCCTGGATTTTAGCTTCAAAATGAGTATAAACACGACTAGTTTTGGAAAATTTTGAAATTTTTTGGGTCCCACCACGAAAACTGAAAATTTTTAAATTTTATAGATTCTAGTCGTGTTCAGGGCTCATTTCAAAGCAGTTTTTGAACCAAGTTAAAGAAAAAAAACTTTTATCAAGTGTTCTCCAAAAATGAGAAAGTTACAGTACTTTTCGTTATCATAAATGGTATGATAAACGTAAAACTACCATAACTCGGCCCACAACGTTCCGAACTCGAAAATTTTCAAAATTTTGAGTTTGTTATACAAAGTGCTCTTAAATGAATATAAACGCGACTAGTTTTGAAAATTTTTTTTGCAAATTTTGCAAAATTTTTTGGTCCCACCACGAAAATTGAAATTTTCAAGTTTCATGAATTCTAGTCGTGTTCATACTCATTTTGAAGAATTTTAAAAGAGTGTTCGAAAAAATCACTTTCAGCCAGATTTCTCCAGAAATGACAATACTACAGTACTTGTAATACATTTTAGGTAAAGACAGAAACGTAAAACTACCGTGACTCCGCTCAAACTGTCTTAAATTCAAAAGTCCTTAAATTTTTGAATTTGTCTTGGTGAGAGCTTCAAAATGAGTATAAACACGACTAGGTTTTCTGAACTTCGATTTTTTCGAATTTCCCCCTAGACCCCCTCTGAATAATCGAAAATTTCAAAGTCAACCAAATCTAGTCATGTTTGAGCTCATTTTG</canonical>
            <polymorphic>CACATTTTTAATAAAACATTTTTTGCCAAAAAAAAAGGTGCTCACTGGATATAAAAAATGCGGCCATTCTCGAGAACACACAGATCACACTCGTCCACCAGGTTTGGATTCATTGAATTGTACTCCGAGACGACGTCTTCTGAAAAAAAAATTTGGAAATTTTTGTTGAGAAATTGAAAAAAAAAATTTTCTAAAAATGATATTTCTCAAAACCTGAAAATCTTTATAGTTTTCAACTTAAAACATAAGATTCTCCTGGATTTTAGCTTCAAAATGAGTATAAACACGACTAGTTTTGGAAAATTTTGAAATTTTTTGGGTCCCACCACGAAAACTGAAAATTTTTAAATTTTATAGATTCTAGTCGTGTTCAGGGCTCATTTCAAAGCAGTTTTTGAACCAAGTTAAAGAAAAAAAACTTTTATCAAGTGTTCTCCAAAAATGAGAAAGTTACAGTACTTTTCGTTATCATAAATGGTATGATAAACGTAAAACTACCRTAACTCGGCCCACAACGTTCCGAACTCGAAAATTTTCAAAATTTTGAGTTTGTTATACAAAGTGCTCTTAAATGAATATAAACGCGACTAGTTTTGAAAATTTTTTTTGCAAATTTTGCAAAATTTTTTGGTCCCACCACGAAAATTGAAATTTTCAAGTTTCATGAATTCTAGTCGTGTTCATACTCATTTTGAAGAATTTTAAAAGAGTGTTCGAAAAAATCACTTTCAGCCAGATTTCTCCAGAAATGACAATACTACAGTACTTGTAATACATTTTAGGTAAAGACAGAAACGTAAAACTACCGTGACTCCGCTCAAACTGTCTTAAATTCAAAAGTCCTTAAATTTTTGAATTTGTCTTGGTGAGAGCTTCAAAATGAGTATAAACACGACTAGGTTTTCTGAACTTCGATTTTTTCGAATTTCCCCCTAGACCCCCTCTGAATAATCGAAAATTTCAAAGTCAACCAAATCTAGTCATGTTTGAGCTCATTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGGAAATTTTTGTTGAGAA</pcr_primer_p1>
		<pcr_primer_p2>TTATGAGGGAATTTTAGAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>951</pcr_amplicon_size>
		<canonical_amplicon>ATTTGGAAATTTTTGTTGAGAAATTGAAAAAAAAAATTTTCTAAAAATGATATTTCTCAAAACCTGAAAATCTTTATAGTTTTCAACTTAAAACATAAGATTCTCCTGGATTTTAGCTTCAAAATGAGTATAAACACGACTAGTTTTGGAAAATTTTGAAATTTTTTGGGTCCCACCACGAAAACTGAAAATTTTTAAATTTTATAGATTCTAGTCGTGTTCAGGGCTCATTTCAAAGCAGTTTTTGAACCAAGTTAAAGAAAAAAAACTTTTATCAAGTGTTCTCCAAAAATGAGAAAGTTACAGTACTTTTCGTTATCATAAATGGTATGATAAACGTAAAACTACCATAACTCGGCCCACAACGTTCCGA</canonical_amplicon>
		<polymorphic_amplicon>ATTTGGAAATTTTTGTTGAGAAATTGAAAAAAAAAATTTTCTAAAAATGATATTTCTCAAAACCTGAAAATCTTTATAGTTTTCAACTTAAAACATAAGATTCTCCTGGATTTTAGCTTCAAAATGAGTATAAACACGACTAGTTTTGGAAAATTTTGAAATTTTTTGGGTCCCACCACGAAAACTGAAAATTTTTAAATTTTATAGATTCTAGTCGTGTTCAGGGCTCATTTCAAAGCAGTTTTTGAACCAAGTTAAAGAAAAAAAACTTTTATCAAGTGTTCTCCAAAAATGAGAAAGTTACAGTACTTTTCGTTATCATAAATGGTATGATAAACGTAAAACTACCRTAACTCGGCCCACAACGTTCCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37705</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>50290</contig_pos>
        <strand></strand>
        <context>ttttcaagtt[T/C]rgctcaaaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTGAAGCTCTGAACGTAAAAAATTCAAAAATTTTAACATTTTCAAGTT</left_flank>
        <right_flank>GGCTCAAAATTGAGCGAGTTACTGTAGTTTTACAATACCCAATTTAAAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTGACGATTTCACATTTCGATATTTTAAAACAATTAAGTCATTTTTTGAGGCTGAAAAATTCCACTTTTCCAAGTCCCAACCGTTGTTACGTCATTTCTTTATCTAGTGACATCAAAAGTTATATTTTCCCCGTTTTTCATTTTTCCCACAATTTTGTGCACTTCATTTTTTTCTCATATGACAATTTTATCACCTTTTTTTCTCCCAGAAAGAATACATTTAATTATTTAGAGTCTATAATTTCAGCTAGCTTCTTTTTTCACGGGTTTACAGGTCAAGATTTGACGGGAAACTTTTGAAACATAGTTTTTTTGACATCAGCAAGTTGTTAGCTTAAAAATGAGTATAAACAAAACTAGGTTTGAGATTTTTGAAATTTCCGACCCTCTATGCGCCTTTAAAGTCGAAAAATCAAAATGGGCGAAACCTAGTCATGTTTATACTCATTTTGAAGCTCTGAACGTAAAAAATTCAAAAATTTTAACATTTTCAAGTTTGGCTCAAAATTGAGCGAGTTACTGTAGTTTTACAATACCCAATTTAAAAGTTTTCAGAATATGTTCATGTTTATACTCATTTTGAAGCTCTGGACGCGAGAAATTCAAGTTTTTTAGTTATTTTTGAATTCAGAAAAAATTGAAAGACTTACCATCATCCAAAGTTGTCGAAAAAGTGACTCTTTCTTCGGTATCATTGGACCCGTGACGCAGTTTTCCAGTGGAATGGCCATCCGACGAAGACGTGGTTTCCAGATCACCCATTTCTGAAAAAAATGAATAATGCAAAAATTCTGAAATATAGAAGCTCAAGAATTTCGAAACATTTGAAAAAAATTGAAAAATTGAATTTTGAATTAAAAACTTTTTTTTTGGAATTTTTCGGAATCCATTTTTCAAAATTCTGAATTTCTTGGAATTTTTGAATCGGAATGTTTTGAAACACTTTTTCGAATTTTTGACAAATTTTTTTTTTCTGGAGTCCGGATTTTTATGTTTTT</canonical>
            <polymorphic>ATGTGACGATTTCACATTTCGATATTTTAAAACAATTAAGTCATTTTTTGAGGCTGAAAAATTCCACTTTTCCAAGTCCCAACCGTTGTTACGTCATTTCTTTATCTAGTGACATCAAAAGTTATATTTTCCCCGTTTTTCATTTTTCCCACAATTTTGTGCACTTCATTTTTTTCTCATATGACAATTTTATCACCTTTTTTTCTCCCAGAAAGAATACATTTAATTATTTAGAGTCTATAATTTCAGCTAGCTTCTTTTTTCACGGGTTTACAGGTCAAGATTTGACGGGAAACTTTTGAAACATAGTTTTTTTGACATCAGCAAGTTGTTAGCTTAAAAATGAGTATAAACAAAACTAGGTTTGAGATTTTTGAAATTTCCGACCCTCTATGCGCCTTTAAAGTCGAAAAATCAAAATGGGCGAAACCTAGTCATGTTTATACTCATTTTGAAGCTCTGAACGTAAAAAATTCAAAAATTTTAACATTTTCAAGTTYGGCTCAAAATTGAGCGAGTTACTGTAGTTTTACAATACCCAATTTAAAAGTTTTCAGAATATGTTCATGTTTATACTCATTTTGAAGCTCTGGACGCGAGAAATTCAAGTTTTTTAGTTATTTTTGAATTCAGAAAAAATTGAAAGACTTACCATCATCCAAAGTTGTCGAAAAAGTGACTCTTTCTTCGGTATCATTGGACCCGTGACGCAGTTTTCCAGTGGAATGGCCATCCGACGAAGACGTGGTTTCCAGATCACCCATTTCTGAAAAAAATGAATAATGCAAAAATTCTGAAATATAGAAGCTCAAGAATTTCGAAACATTTGAAAAAAATTGAAAAATTGAATTTTGAATTAAAAACTTTTTTTTTGGAATTTTTCGGAATCCATTTTTCAAAATTCTGAATTTCTTGGAATTTTTGAATCGGAATGTTTTGAAACACTTTTTCGAATTTTTGACAAATTTTTTTTTTCTGGAGTCCGGATTTTTATGTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATAATTTCAGCTAGCTTCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCGACAACTTTGGATGAT</pcr_primer_p2>
		<pcr_amplicon_size>436</pcr_amplicon_size>
		<canonical_amplicon>CTATAATTTCAGCTAGCTTCTTTTTTCACGGGTTTACAGGTCAAGATTTGACGGGAAACTTTTGAAACATAGTTTTTTTGACATCAGCAAGTTGTTAGCTTAAAAATGAGTATAAACAAAACTAGGTTTGAGATTTTTGAAATTTCCGACCCTCTATGCGCCTTTAAAGTCGAAAAATCAAAATGGGCGAAACCTAGTCATGTTTATACTCATTTTGAAGCTCTGAACGTAAAAAATTCAAAAATTTTAACATTTTCAAGTTTGGCTCAAAATTGAGCGAGTTACTGTAGTTTTACAATACCCAATTTAAAAGTTTTCAGAATATGTTCATGTTTATACTCATTTTGAAGCTCTGGACGCGAGAAATTCAAGTTTTTTAGTTATTTTTGAATTCAGAAAAAATTGAAAGACTTACCATCATCCAAAGTTGTCGAAA</canonical_amplicon>
		<polymorphic_amplicon>CTATAATTTCAGCTAGCTTCTTTTTTCACGGGTTTACAGGTCAAGATTTGACGGGAAACTTTTGAAACATAGTTTTTTTGACATCAGCAAGTTGTTAGCTTAAAAATGAGTATAAACAAAACTAGGTTTGAGATTTTTGAAATTTCCGACCCTCTATGCGCCTTTAAAGTCGAAAAATCAAAATGGGCGAAACCTAGTCATGTTTATACTCATTTTGAAGCTCTGAACGTAAAAAATTCAAAAATTTTAACATTTTCAAGTTYGGCTCAAAATTGAGCGAGTTACTGTAGTTTTACAATACCCAATTTAAAAGTTTTCAGAATATGTTCATGTTTATACTCATTTTGAAGCTCTGGACGCGAGAAATTCAAGTTTTTTAGTTATTTTTGAATTCAGAAAAAATTGAAAGACTTACCATCATCCAAAGTTGTCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37706</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>50291</contig_pos>
        <strand></strand>
        <context>tttcaagtty[G/A]gctcaaaatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTGAAGCTCTGAACGTAAAAAATTCAAAAATTTTAACATTTTCAAGTTT</left_flank>
        <right_flank>GCTCAAAATTGAGCGAGTTACTGTAGTTTTACAATACCCAATTTAAAAGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGACGATTTCACATTTCGATATTTTAAAACAATTAAGTCATTTTTTGAGGCTGAAAAATTCCACTTTTCCAAGTCCCAACCGTTGTTACGTCATTTCTTTATCTAGTGACATCAAAAGTTATATTTTCCCCGTTTTTCATTTTTCCCACAATTTTGTGCACTTCATTTTTTTCTCATATGACAATTTTATCACCTTTTTTTCTCCCAGAAAGAATACATTTAATTATTTAGAGTCTATAATTTCAGCTAGCTTCTTTTTTCACGGGTTTACAGGTCAAGATTTGACGGGAAACTTTTGAAACATAGTTTTTTTGACATCAGCAAGTTGTTAGCTTAAAAATGAGTATAAACAAAACTAGGTTTGAGATTTTTGAAATTTCCGACCCTCTATGCGCCTTTAAAGTCGAAAAATCAAAATGGGCGAAACCTAGTCATGTTTATACTCATTTTGAAGCTCTGAACGTAAAAAATTCAAAAATTTTAACATTTTCAAGTTTGGCTCAAAATTGAGCGAGTTACTGTAGTTTTACAATACCCAATTTAAAAGTTTTCAGAATATGTTCATGTTTATACTCATTTTGAAGCTCTGGACGCGAGAAATTCAAGTTTTTTAGTTATTTTTGAATTCAGAAAAAATTGAAAGACTTACCATCATCCAAAGTTGTCGAAAAAGTGACTCTTTCTTCGGTATCATTGGACCCGTGACGCAGTTTTCCAGTGGAATGGCCATCCGACGAAGACGTGGTTTCCAGATCACCCATTTCTGAAAAAAATGAATAATGCAAAAATTCTGAAATATAGAAGCTCAAGAATTTCGAAACATTTGAAAAAAATTGAAAAATTGAATTTTGAATTAAAAACTTTTTTTTTGGAATTTTTCGGAATCCATTTTTCAAAATTCTGAATTTCTTGGAATTTTTGAATCGGAATGTTTTGAAACACTTTTTCGAATTTTTGACAAATTTTTTTTTTCTGGAGTCCGGATTTTTATGTTTTTT</canonical>
            <polymorphic>TGTGACGATTTCACATTTCGATATTTTAAAACAATTAAGTCATTTTTTGAGGCTGAAAAATTCCACTTTTCCAAGTCCCAACCGTTGTTACGTCATTTCTTTATCTAGTGACATCAAAAGTTATATTTTCCCCGTTTTTCATTTTTCCCACAATTTTGTGCACTTCATTTTTTTCTCATATGACAATTTTATCACCTTTTTTTCTCCCAGAAAGAATACATTTAATTATTTAGAGTCTATAATTTCAGCTAGCTTCTTTTTTCACGGGTTTACAGGTCAAGATTTGACGGGAAACTTTTGAAACATAGTTTTTTTGACATCAGCAAGTTGTTAGCTTAAAAATGAGTATAAACAAAACTAGGTTTGAGATTTTTGAAATTTCCGACCCTCTATGCGCCTTTAAAGTCGAAAAATCAAAATGGGCGAAACCTAGTCATGTTTATACTCATTTTGAAGCTCTGAACGTAAAAAATTCAAAAATTTTAACATTTTCAAGTTTRGCTCAAAATTGAGCGAGTTACTGTAGTTTTACAATACCCAATTTAAAAGTTTTCAGAATATGTTCATGTTTATACTCATTTTGAAGCTCTGGACGCGAGAAATTCAAGTTTTTTAGTTATTTTTGAATTCAGAAAAAATTGAAAGACTTACCATCATCCAAAGTTGTCGAAAAAGTGACTCTTTCTTCGGTATCATTGGACCCGTGACGCAGTTTTCCAGTGGAATGGCCATCCGACGAAGACGTGGTTTCCAGATCACCCATTTCTGAAAAAAATGAATAATGCAAAAATTCTGAAATATAGAAGCTCAAGAATTTCGAAACATTTGAAAAAAATTGAAAAATTGAATTTTGAATTAAAAACTTTTTTTTTGGAATTTTTCGGAATCCATTTTTCAAAATTCTGAATTTCTTGGAATTTTTGAATCGGAATGTTTTGAAACACTTTTTCGAATTTTTGACAAATTTTTTTTTTCTGGAGTCCGGATTTTTATGTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>196 194 142 122 85 82 78 52 45 4</canonical_bands>
                <polymorphic_bands>196 194 142 130 122 82 78 52 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATAATTTCAGCTAGCTTCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCGACAACTTTGGATGAT</pcr_primer_p2>
		<pcr_amplicon_size>436</pcr_amplicon_size>
		<canonical_amplicon>CTATAATTTCAGCTAGCTTCTTTTTTCACGGGTTTACAGGTCAAGATTTGACGGGAAACTTTTGAAACATAGTTTTTTTGACATCAGCAAGTTGTTAGCTTAAAAATGAGTATAAACAAAACTAGGTTTGAGATTTTTGAAATTTCCGACCCTCTATGCGCCTTTAAAGTCGAAAAATCAAAATGGGCGAAACCTAGTCATGTTTATACTCATTTTGAAGCTCTGAACGTAAAAAATTCAAAAATTTTAACATTTTCAAGTTTGGCTCAAAATTGAGCGAGTTACTGTAGTTTTACAATACCCAATTTAAAAGTTTTCAGAATATGTTCATGTTTATACTCATTTTGAAGCTCTGGACGCGAGAAATTCAAGTTTTTTAGTTATTTTTGAATTCAGAAAAAATTGAAAGACTTACCATCATCCAAAGTTGTCGAAA</canonical_amplicon>
		<polymorphic_amplicon>CTATAATTTCAGCTAGCTTCTTTTTTCACGGGTTTACAGGTCAAGATTTGACGGGAAACTTTTGAAACATAGTTTTTTTGACATCAGCAAGTTGTTAGCTTAAAAATGAGTATAAACAAAACTAGGTTTGAGATTTTTGAAATTTCCGACCCTCTATGCGCCTTTAAAGTCGAAAAATCAAAATGGGCGAAACCTAGTCATGTTTATACTCATTTTGAAGCTCTGAACGTAAAAAATTCAAAAATTTTAACATTTTCAAGTTTRGCTCAAAATTGAGCGAGTTACTGTAGTTTTACAATACCCAATTTAAAAGTTTTCAGAATATGTTCATGTTTATACTCATTTTGAAGCTCTGGACGCGAGAAATTCAAGTTTTTTAGTTATTTTTGAATTCAGAAAAAATTGAAAGACTTACCATCATCCAAAGTTGTCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37707</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>50340</contig_pos>
        <strand></strand>
        <context>caatttaaaa[G/A]ttttcagaat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGGCTCAAAATTGAGCGAGTTACTGTAGTTTTACAATACCCAATTTAAAA</left_flank>
        <right_flank>TTTTCAGAATATGTTCATGTTTATACTCATTTTGAAGCTCTGGACGCGAG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGCTGAAAAATTCCACTTTTCCAAGTCCCAACCGTTGTTACGTCATTTCTTTATCTAGTGACATCAAAAGTTATATTTTCCCCGTTTTTCATTTTTCCCACAATTTTGTGCACTTCATTTTTTTCTCATATGACAATTTTATCACCTTTTTTTCTCCCAGAAAGAATACATTTAATTATTTAGAGTCTATAATTTCAGCTAGCTTCTTTTTTCACGGGTTTACAGGTCAAGATTTGACGGGAAACTTTTGAAACATAGTTTTTTTGACATCAGCAAGTTGTTAGCTTAAAAATGAGTATAAACAAAACTAGGTTTGAGATTTTTGAAATTTCCGACCCTCTATGCGCCTTTAAAGTCGAAAAATCAAAATGGGCGAAACCTAGTCATGTTTATACTCATTTTGAAGCTCTGAACGTAAAAAATTCAAAAATTTTAACATTTTCAAGTTTGGCTCAAAATTGAGCGAGTTACTGTAGTTTTACAATACCCAATTTAAAAGTTTTCAGAATATGTTCATGTTTATACTCATTTTGAAGCTCTGGACGCGAGAAATTCAAGTTTTTTAGTTATTTTTGAATTCAGAAAAAATTGAAAGACTTACCATCATCCAAAGTTGTCGAAAAAGTGACTCTTTCTTCGGTATCATTGGACCCGTGACGCAGTTTTCCAGTGGAATGGCCATCCGACGAAGACGTGGTTTCCAGATCACCCATTTCTGAAAAAAATGAATAATGCAAAAATTCTGAAATATAGAAGCTCAAGAATTTCGAAACATTTGAAAAAAATTGAAAAATTGAATTTTGAATTAAAAACTTTTTTTTTGGAATTTTTCGGAATCCATTTTTCAAAATTCTGAATTTCTTGGAATTTTTGAATCGGAATGTTTTGAAACACTTTTTCGAATTTTTGACAAATTTTTTTTTTCTGGAGTCCGGATTTTTATGTTTTTTGGAAATTTTTGAAAATTCTGAAAATCTGAATTTTTCAAATATTTCAAAT</canonical>
            <polymorphic>AGGCTGAAAAATTCCACTTTTCCAAGTCCCAACCGTTGTTACGTCATTTCTTTATCTAGTGACATCAAAAGTTATATTTTCCCCGTTTTTCATTTTTCCCACAATTTTGTGCACTTCATTTTTTTCTCATATGACAATTTTATCACCTTTTTTTCTCCCAGAAAGAATACATTTAATTATTTAGAGTCTATAATTTCAGCTAGCTTCTTTTTTCACGGGTTTACAGGTCAAGATTTGACGGGAAACTTTTGAAACATAGTTTTTTTGACATCAGCAAGTTGTTAGCTTAAAAATGAGTATAAACAAAACTAGGTTTGAGATTTTTGAAATTTCCGACCCTCTATGCGCCTTTAAAGTCGAAAAATCAAAATGGGCGAAACCTAGTCATGTTTATACTCATTTTGAAGCTCTGAACGTAAAAAATTCAAAAATTTTAACATTTTCAAGTTTGGCTCAAAATTGAGCGAGTTACTGTAGTTTTACAATACCCAATTTAAAARTTTTCAGAATATGTTCATGTTTATACTCATTTTGAAGCTCTGGACGCGAGAAATTCAAGTTTTTTAGTTATTTTTGAATTCAGAAAAAATTGAAAGACTTACCATCATCCAAAGTTGTCGAAAAAGTGACTCTTTCTTCGGTATCATTGGACCCGTGACGCAGTTTTCCAGTGGAATGGCCATCCGACGAAGACGTGGTTTCCAGATCACCCATTTCTGAAAAAAATGAATAATGCAAAAATTCTGAAATATAGAAGCTCAAGAATTTCGAAACATTTGAAAAAAATTGAAAAATTGAATTTTGAATTAAAAACTTTTTTTTTGGAATTTTTCGGAATCCATTTTTCAAAATTCTGAATTTCTTGGAATTTTTGAATCGGAATGTTTTGAAACACTTTTTCGAATTTTTGACAAATTTTTTTTTTCTGGAGTCCGGATTTTTATGTTTTTTGGAAATTTTTGAAAATTCTGAAAATCTGAATTTTTCAAATATTTCAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATAATTTCAGCTAGCTTCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCGACAACTTTGGATGAT</pcr_primer_p2>
		<pcr_amplicon_size>436</pcr_amplicon_size>
		<canonical_amplicon>CTATAATTTCAGCTAGCTTCTTTTTTCACGGGTTTACAGGTCAAGATTTGACGGGAAACTTTTGAAACATAGTTTTTTTGACATCAGCAAGTTGTTAGCTTAAAAATGAGTATAAACAAAACTAGGTTTGAGATTTTTGAAATTTCCGACCCTCTATGCGCCTTTAAAGTCGAAAAATCAAAATGGGCGAAACCTAGTCATGTTTATACTCATTTTGAAGCTCTGAACGTAAAAAATTCAAAAATTTTAACATTTTCAAGTTTGGCTCAAAATTGAGCGAGTTACTGTAGTTTTACAATACCCAATTTAAAAGTTTTCAGAATATGTTCATGTTTATACTCATTTTGAAGCTCTGGACGCGAGAAATTCAAGTTTTTTAGTTATTTTTGAATTCAGAAAAAATTGAAAGACTTACCATCATCCAAAGTTGTCGAAA</canonical_amplicon>
		<polymorphic_amplicon>CTATAATTTCAGCTAGCTTCTTTTTTCACGGGTTTACAGGTCAAGATTTGACGGGAAACTTTTGAAACATAGTTTTTTTGACATCAGCAAGTTGTTAGCTTAAAAATGAGTATAAACAAAACTAGGTTTGAGATTTTTGAAATTTCCGACCCTCTATGCGCCTTTAAAGTCGAAAAATCAAAATGGGCGAAACCTAGTCATGTTTATACTCATTTTGAAGCTCTGAACGTAAAAAATTCAAAAATTTTAACATTTTCAAGTTTGGCTCAAAATTGAGCGAGTTACTGTAGTTTTACAATACCCAATTTAAAARTTTTCAGAATATGTTCATGTTTATACTCATTTTGAAGCTCTGGACGCGAGAAATTCAAGTTTTTTAGTTATTTTTGAATTCAGAAAAAATTGAAAGACTTACCATCATCCAAAGTTGTCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37708</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>50471</contig_pos>
        <strand></strand>
        <context>AAAAAGTGAC[T/C]CTTTCTTCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAGAAAAAATTGAAAGACTTACCATCATCCAAAGTTGTCGAAAAAGTGAC</left_flank>
        <right_flank>CTTTCTTCGGTATCATTGGACCCGTGACGCAGTTTTCCAGTGGAATGGCC</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACAATTTTATCACCTTTTTTTCTCCCAGAAAGAATACATTTAATTATTTAGAGTCTATAATTTCAGCTAGCTTCTTTTTTCACGGGTTTACAGGTCAAGATTTGACGGGAAACTTTTGAAACATAGTTTTTTTGACATCAGCAAGTTGTTAGCTTAAAAATGAGTATAAACAAAACTAGGTTTGAGATTTTTGAAATTTCCGACCCTCTATGCGCCTTTAAAGTCGAAAAATCAAAATGGGCGAAACCTAGTCATGTTTATACTCATTTTGAAGCTCTGAACGTAAAAAATTCAAAAATTTTAACATTTTCAAGTTTGGCTCAAAATTGAGCGAGTTACTGTAGTTTTACAATACCCAATTTAAAAGTTTTCAGAATATGTTCATGTTTATACTCATTTTGAAGCTCTGGACGCGAGAAATTCAAGTTTTTTAGTTATTTTTGAATTCAGAAAAAATTGAAAGACTTACCATCATCCAAAGTTGTCGAAAAAGTGACTCTTTCTTCGGTATCATTGGACCCGTGACGCAGTTTTCCAGTGGAATGGCCATCCGACGAAGACGTGGTTTCCAGATCACCCATTTCTGAAAAAAATGAATAATGCAAAAATTCTGAAATATAGAAGCTCAAGAATTTCGAAACATTTGAAAAAAATTGAAAAATTGAATTTTGAATTAAAAACTTTTTTTTTGGAATTTTTCGGAATCCATTTTTCAAAATTCTGAATTTCTTGGAATTTTTGAATCGGAATGTTTTGAAACACTTTTTCGAATTTTTGACAAATTTTTTTTTTCTGGAGTCCGGATTTTTATGTTTTTTGGAAATTTTTGAAAATTCTGAAAATCTGAATTTTTCAAATATTTCAAATTTACAGCTTTTGGAATTCCCCTGAAATATTTAAATATTAAAAAATTGGAAAATTGGGAAATTCAGGAATTTGAAAAATTAATAATCCAAAACCTGAAAAGTCCAGAAATTCAAGAAAAATCTTTCAAAAAT</canonical>
            <polymorphic>TGACAATTTTATCACCTTTTTTTCTCCCAGAAAGAATACATTTAATTATTTAGAGTCTATAATTTCAGCTAGCTTCTTTTTTCACGGGTTTACAGGTCAAGATTTGACGGGAAACTTTTGAAACATAGTTTTTTTGACATCAGCAAGTTGTTAGCTTAAAAATGAGTATAAACAAAACTAGGTTTGAGATTTTTGAAATTTCCGACCCTCTATGCGCCTTTAAAGTCGAAAAATCAAAATGGGCGAAACCTAGTCATGTTTATACTCATTTTGAAGCTCTGAACGTAAAAAATTCAAAAATTTTAACATTTTCAAGTTTGGCTCAAAATTGAGCGAGTTACTGTAGTTTTACAATACCCAATTTAAAAGTTTTCAGAATATGTTCATGTTTATACTCATTTTGAAGCTCTGGACGCGAGAAATTCAAGTTTTTTAGTTATTTTTGAATTCAGAAAAAATTGAAAGACTTACCATCATCCAAAGTTGTCGAAAAAGTGACYCTTTCTTCGGTATCATTGGACCCGTGACGCAGTTTTCCAGTGGAATGGCCATCCGACGAAGACGTGGTTTCCAGATCACCCATTTCTGAAAAAAATGAATAATGCAAAAATTCTGAAATATAGAAGCTCAAGAATTTCGAAACATTTGAAAAAAATTGAAAAATTGAATTTTGAATTAAAAACTTTTTTTTTGGAATTTTTCGGAATCCATTTTTCAAAATTCTGAATTTCTTGGAATTTTTGAATCGGAATGTTTTGAAACACTTTTTCGAATTTTTGACAAATTTTTTTTTTCTGGAGTCCGGATTTTTATGTTTTTTGGAAATTTTTGAAAATTCTGAAAATCTGAATTTTTCAAATATTTCAAATTTACAGCTTTTGGAATTCCCCTGAAATATTTAAATATTAAAAAATTGGAAAATTGGGAAATTCAGGAATTTGAAAAATTAATAATCCAAAACCTGAAAAGTCCAGAAATTCAAGAAAAATCTTTCAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>444 207 202 55 53 39</canonical_bands>
                <polymorphic_bands>651 202 55 53 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATAATTTCAGCTAGCTTCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCAGAAATGGGTGATCTG</pcr_primer_p2>
		<pcr_amplicon_size>535</pcr_amplicon_size>
		<canonical_amplicon>CTATAATTTCAGCTAGCTTCTTTTTTCACGGGTTTACAGGTCAAGATTTGACGGGAAACTTTTGAAACATAGTTTTTTTGACATCAGCAAGTTGTTAGCTTAAAAATGAGTATAAACAAAACTAGGTTTGAGATTTTTGAAATTTCCGACCCTCTATGCGCCTTTAAAGTCGAAAAATCAAAATGGGCGAAACCTAGTCATGTTTATACTCATTTTGAAGCTCTGAACGTAAAAAATTCAAAAATTTTAACATTTTCAAGTTTGGCTCAAAATTGAGCGAGTTACTGTAGTTTTACAATACCCAATTTAAAAGTTTTCAGAATATGTTCATGTTTATACTCATTTTGAAGCTCTGGACGCGAGAAATTCAAGTTTTTTAGTTATTTTTGAATTCAGAAAAAATTGAAAGACTTACCATCATCCAAAGTTGTCGAAAAAGTGACTCTTTCTTCGGTATCATTGGACCCGTGACGCAGTTTTCCAGTGGAATGGCCATCCGACGAAGACGTGGTTTCCAGATCACCCATTTCTGAAA</canonical_amplicon>
		<polymorphic_amplicon>CTATAATTTCAGCTAGCTTCTTTTTTCACGGGTTTACAGGTCAAGATTTGACGGGAAACTTTTGAAACATAGTTTTTTTGACATCAGCAAGTTGTTAGCTTAAAAATGAGTATAAACAAAACTAGGTTTGAGATTTTTGAAATTTCCGACCCTCTATGCGCCTTTAAAGTCGAAAAATCAAAATGGGCGAAACCTAGTCATGTTTATACTCATTTTGAAGCTCTGAACGTAAAAAATTCAAAAATTTTAACATTTTCAAGTTTGGCTCAAAATTGAGCGAGTTACTGTAGTTTTACAATACCCAATTTAAAAGTTTTCAGAATATGTTCATGTTTATACTCATTTTGAAGCTCTGGACGCGAGAAATTCAAGTTTTTTAGTTATTTTTGAATTCAGAAAAAATTGAAAGACTTACCATCATCCAAAGTTGTCGAAAAAGTGACYCTTTCTTCGGTATCATTGGACCCGTGACGCAGTTTTCCAGTGGAATGGCCATCCGACGAAGACGTGGTTTCCAGATCACCCATTTCTGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37711</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>72435</contig_pos>
        <strand>+</strand>
        <context>GCTCAAAAAG[A/T]CACTCAAATC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGAAATTGAAATTTTTTGGGTGGTGATGGGGGGTTCTTGGGCTCAAAAAG</left_flank>
        <right_flank>CACTCAAATCAATACTCATCGCCCTCCTCTCCATTATCCTCGAGACTATC</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTGGTAGCTACCCTAGTTTTTGAGATATACGCCTTTATAGTTAGCTTGCGCTCCTTCCCCCCGTTGCCGCCACCGCCTCCAATGGAGGCGTAAACTTTAAAGGCGCATATTTCAGCAACCCTTATAGCTATGAAAAAAATGCAAGCAACAAAAATGTGTAAATTTTTATGCGGAGCATTTTTGTAGTTCGTAATTTTTGTCTAGCTGCTCTAGTTTTTGAGTTACGCGCCTTTAAAGTTGGCTCGCCCCGGAATCGGCATAAAAAAGAAAAAATGGCGGAGAGGAACAAGTTTATCGAATCGATCGTTGTAAAAATGAAATTTTAATATAAAGGGAATTCGAAAATTTGAAAATTGACAAAAAAATTGGAGAAATTCAAAGCATATAGGGAGCAAAAGCAAGCAATTTGAGGGGAATTTGGGGAATTCACATAAAAAAACATTAGGCGAAATTGAAATTTTTTGGGTGGTGATGGGGGGTTCTTGGGCTCAAAAAGTCACTCAAATCAATACTCATCGCCCTCCTCTCCATTATCCTCGAGACTATCGACACCAACTTCCTCGTAGTCCTTCTCCAACGCAGCCAAATCCTCACGAGCCTCCGAGAACTCGCCCTCTTCCATTCCTTCTCCAACATACCAGTGGACAAATGCTCTCTTGGCGTACATAAGGTCGAATTTGTGGTCCAGGCGAGCCCAAGCCTCGGCGATGGCCGTGGTGTTGGACAACATGCATACGGCACGTGGCACCTTGGCTAGGTCACCTCCTGGGACGACGGTTGGTGGTTGGTAGTTGATTCCGACCTGGAAAACTTGATTTTCTGATTTTTCTGTTAAATGGAAATTAAAGAGCACGAAATTTCCTAAATTTTTGTAATTGATAGTTTTCTCATAGTTGTTATAGTTGTTGAGATATGCGCCTTTAAAGTTAAGCTACCCCTACCGGTGGAGAAGGGAGGAGCCAGGCAGGCCTAATTTAAAGATACATATCTCAAAAAC</canonical>
            <polymorphic>TTTTTGGTAGCTACCCTAGTTTTTGAGATATACGCCTTTATAGTTAGCTTGCGCTCCTTCCCCCCGTTGCCGCCACCGCCTCCAATGGAGGCGTAAACTTTAAAGGCGCATATTTCAGCAACCCTTATAGCTATGAAAAAAATGCAAGCAACAAAAATGTGTAAATTTTTATGCGGAGCATTTTTGTAGTTCGTAATTTTTGTCTAGCTGCTCTAGTTTTTGAGTTACGCGCCTTTAAAGTTGGCTCGCCCCGGAATCGGCATAAAAAAGAAAAAATGGCGGAGAGGAACAAGTTTATCGAATCGATCGTTGTAAAAATGAAATTTTAATATAAAGGGAATTCGAAAATTTGAAAATTGACAAAAAAATTGGAGAAATTCAAAGCATATAGGGAGCAAAAGCAAGCAATTTGAGGGGAATTTGGGGAATTCACATAAAAAAACATTAGGCGAAATTGAAATTTTTTGGGTGGTGATGGGGGGTTCTTGGGCTCAAAAAGWCACTCAAATCAATACTCATCGCCCTCCTCTCCATTATCCTCGAGACTATCGACACCAACTTCCTCGTAGTCCTTCTCCAACGCAGCCAAATCCTCACGAGCCTCCGAGAACTCGCCCTCTTCCATTCCTTCTCCAACATACCAGTGGACAAATGCTCTCTTGGCGTACATAAGGTCGAATTTGTGGTCCAGGCGAGCCCAAGCCTCGGCGATGGCCGTGGTGTTGGACAACATGCATACGGCACGTGGCACCTTGGCTAGGTCACCTCCTGGGACGACGGTTGGTGGTTGGTAGTTGATTCCGACCTGGAAAACTTGATTTTCTGATTTTTCTGTTAAATGGAAATTAAAGAGCACGAAATTTCCTAAATTTTTGTAATTGATAGTTTTCTCATAGTTGTTATAGTTGTTGAGATATGCGCCTTTAAAGTTAAGCTACCCCTACCGGTGGAGAAGGGAGGAGCCAGGCAGGCCTAATTTAAAGATACATATCTCAAAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>275 262 240 223</canonical_bands>
                <polymorphic_bands>537 240 223</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>498 262 240</canonical_bands>
                <polymorphic_bands>760 240</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAATATAAAGGGAATTCGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAGGACTACGAGGAAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTAATATAAAGGGAATTCGAAAATTTGAAAATTGACAAAAAAATTGGAGAAATTCAAAGCATATAGGGAGCAAAAGCAAGCAATTTGAGGGGAATTTGGGGAATTCACATAAAAAAACATTAGGCGAAATTGAAATTTTTTGGGTGGTGATGGGGGGTTCTTGGGCTCAAAAAGTCACTCAAATCAATACTCATCGCCCTCCTCTCCATTATCCTCGAGACTATCGACACCAACTTCCTCGTAGTCCTTCT</canonical_amplicon>
		<polymorphic_amplicon>TTAATATAAAGGGAATTCGAAAATTTGAAAATTGACAAAAAAATTGGAGAAATTCAAAGCATATAGGGAGCAAAAGCAAGCAATTTGAGGGGAATTTGGGGAATTCACATAAAAAAACATTAGGCGAAATTGAAATTTTTTGGGTGGTGATGGGGGGTTCTTGGGCTCAAAAAGWCACTCAAATCAATACTCATCGCCCTCCTCTCCATTATCCTCGAGACTATCGACACCAACTTCCTCGTAGTCCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37712</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>72823</contig_pos>
        <strand></strand>
        <context>attgatagtt[T/A]tctcatagtt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATGGAAATTAAAGAGCACGAAATTTCCTAAATTTTTGTAATTGATAGTT</left_flank>
        <right_flank>TCTCATAGTTGTTATAGTTGTTGAGATATGCGCCTTTAAAGTTAAGCTAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGGAGCAAAAGCAAGCAATTTGAGGGGAATTTGGGGAATTCACATAAAAAAACATTAGGCGAAATTGAAATTTTTTGGGTGGTGATGGGGGGTTCTTGGGCTCAAAAAGTCACTCAAATCAATACTCATCGCCCTCCTCTCCATTATCCTCGAGACTATCGACACCAACTTCCTCGTAGTCCTTCTCCAACGCAGCCAAATCCTCACGAGCCTCCGAGAACTCGCCCTCTTCCATTCCTTCTCCAACATACCAGTGGACAAATGCTCTCTTGGCGTACATAAGGTCGAATTTGTGGTCCAGGCGAGCCCAAGCCTCGGCGATGGCCGTGGTGTTGGACAACATGCATACGGCACGTGGCACCTTGGCTAGGTCACCTCCTGGGACGACGGTTGGTGGTTGGTAGTTGATTCCGACCTGGAAAACTTGATTTTCTGATTTTTCTGTTAAATGGAAATTAAAGAGCACGAAATTTCCTAAATTTTTGTAATTGATAGTTTTCTCATAGTTGTTATAGTTGTTGAGATATGCGCCTTTAAAGTTAAGCTACCCCTACCGGTGGAGAAGGGAGGAGCCAGGCAGGCCTAATTTAAAGATACATATCTCAAAAACTAAGCTATTAAAACTTGGTACATTGTAAATTGCTCAGCATAAAACTTCACACATTTTTGTAGTTGACAATTTTTAACTAGCTATCACTGTGTTTGAGTTATGCGCCTTTAAAGTTAGGCAACGGCGGCTGCGGGGAAAAGGGGGAGGGTGTTTCTCCTTTAAAGGCGCATAACTCGAAAACTACGGTAGTTACCAAAAAGTTGTTAACTTCAAAGTTGTTCAGCGTAAAATTCTAAACAAACTTTGATTTTCAAATTCCTATAGATTTTTTTAGTTTTTGAGGTATGCGCCTTTAAAGTTAGGTGAGTCACACTAGCGGTGGATGCGGGGGAAGAATGTGTCTTCTTTAAAGACGTATAACTCAAAAACTACTGTAGCTATCTACAAA</canonical>
            <polymorphic>TAGGGAGCAAAAGCAAGCAATTTGAGGGGAATTTGGGGAATTCACATAAAAAAACATTAGGCGAAATTGAAATTTTTTGGGTGGTGATGGGGGGTTCTTGGGCTCAAAAAGTCACTCAAATCAATACTCATCGCCCTCCTCTCCATTATCCTCGAGACTATCGACACCAACTTCCTCGTAGTCCTTCTCCAACGCAGCCAAATCCTCACGAGCCTCCGAGAACTCGCCCTCTTCCATTCCTTCTCCAACATACCAGTGGACAAATGCTCTCTTGGCGTACATAAGGTCGAATTTGTGGTCCAGGCGAGCCCAAGCCTCGGCGATGGCCGTGGTGTTGGACAACATGCATACGGCACGTGGCACCTTGGCTAGGTCACCTCCTGGGACGACGGTTGGTGGTTGGTAGTTGATTCCGACCTGGAAAACTTGATTTTCTGATTTTTCTGTTAAATGGAAATTAAAGAGCACGAAATTTCCTAAATTTTTGTAATTGATAGTTWTCTCATAGTTGTTATAGTTGTTGAGATATGCGCCTTTAAAGTTAAGCTACCCCTACCGGTGGAGAAGGGAGGAGCCAGGCAGGCCTAATTTAAAGATACATATCTCAAAAACTAAGCTATTAAAACTTGGTACATTGTAAATTGCTCAGCATAAAACTTCACACATTTTTGTAGTTGACAATTTTTAACTAGCTATCACTGTGTTTGAGTTATGCGCCTTTAAAGTTAGGCAACGGCGGCTGCGGGGAAAAGGGGGAGGGTGTTTCTCCTTTAAAGGCGCATAACTCGAAAACTACGGTAGTTACCAAAAAGTTGTTAACTTCAAAGTTGTTCAGCGTAAAATTCTAAACAAACTTTGATTTTCAAATTCCTATAGATTTTTTTAGTTTTTGAGGTATGCGCCTTTAAAGTTAGGTGAGTCACACTAGCGGTGGATGCGGGGGAAGAATGTGTCTTCTTTAAAGACGTATAACTCAAAAACTACTGTAGCTATCTACAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAACTTGATTTTCTGATTTT</pcr_primer_p1>
		<pcr_primer_p2>AGAAAGCTATGGGAATTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>613</pcr_amplicon_size>
		<canonical_amplicon>GGAAAACTTGATTTTCTGATTTTTCTGTTAAATGGAAATTAAAGAGCACGAAATTTCCTAAATTTTTGTAATTGATAGTTTTCTCATAGTTGTTATAGTTG</canonical_amplicon>
		<polymorphic_amplicon>GGAAAACTTGATTTTCTGATTTTTCTGTTAAATGGAAATTAAAGAGCACGAAATTTCCTAAATTTTTGTAATTGATAGTTWTCTCATAGTTGTTATAGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37713</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>76698</contig_pos>
        <strand></strand>
        <context>aatttgaagg[C/A]gcatatctca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GTGCGGATCTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGG</left_flank>
        <right_flank>GCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTAGGCTTATTTTAAAGCTCTTAACCTCTAAAGTTCAAAATTCTCATATTCAAACTTTTCTTACCTCATTATCAACCATGAATGAGCAATCGGAGTGCTCCAAAGTGGTATGGGTGGTCAGAATGGAGTTGTATGGCTCCACGACAGCAGTGGAGACCTGTGGAGCCGGATACACCGAGAACTCCAATTTCGCCTTTTTACCGTAATCCACAGAGAGTCGCTCCATCAAAAGGGAAGTGAATCCGGATCCAGTACCGCCTCCAAACGAATGGAAAACCAAAAATCCTTGTAGTCCGGTACAGTTGTCAGCCAGACGACGGATACGGTCCAGGGTCAAGTCGATGATCTCTTTTCCAATTGTATAATGACCACGGGCGTAGTTATTAGCGGCATCTTCTTTTCCGGTGATCAGTTGTTCCGGATGGAAGAGACTACGGTAGGTGCCGGTGCGGATCTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGC</canonical>
            <polymorphic>AATTTAGGCTTATTTTAAAGCTCTTAACCTCTAAAGTTCAAAATTCTCATATTCAAACTTTTCTTACCTCATTATCAACCATGAATGAGCAATCGGAGTGCTCCAAAGTGGTATGGGTGGTCAGAATGGAGTTGTATGGCTCCACGACAGCAGTGGAGACCTGTGGAGCCGGATACACCGAGAACTCCAATTTCGCCTTTTTACCGTAATCCACAGAGAGTCGCTCCATCAAAAGGGAAGTGAATCCGGATCCAGTACCGCCTCCAAACGAATGGAAAACCAAAAATCCTTGTAGTCCGGTACAGTTGTCAGCCAGACGACGGATACGGTCCAGGGTCAAGTCGATGATCTCTTTTCCAATTGTATAATGACCACGGGCGTAGTTATTAGCGGCATCTTCTTTTCCGGTGATCAGTTGTTCCGGATGGAAGAGACTACGGTAGGTGCCGGTGCGGATCTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGMGCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 162 139 115 55 28</canonical_bands>
                <polymorphic_bands>663 139 115 55 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGTTATTAGCGGCATCTTCTT</pcr_primer_p1>
		<pcr_primer_p2>GAGAAAATAGGGGAAAAATGAG</pcr_primer_p2>
		<pcr_amplicon_size>717</pcr_amplicon_size>
		<canonical_amplicon>TAGTTATTAGCGGCATCTTCTTTTCCGGTGATCAGTTGTTCCGGATGGAAGAGACTACGGTAGGTGCCGGTGCGGATCTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAG</canonical_amplicon>
		<polymorphic_amplicon>TAGTTATTAGCGGCATCTTCTTTTCCGGTGATCAGTTGTTCCGGATGGAAGAGACTACGGTAGGTGCCGGTGCGGATCTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGMGCATATCTCAACATTCTTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37714</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>76727</contig_pos>
        <strand></strand>
        <context>gagagataga[A/T]aaaaacgata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGA</left_flank>
        <right_flank>AAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAAAGTTCAAAATTCTCATATTCAAACTTTTCTTACCTCATTATCAACCATGAATGAGCAATCGGAGTGCTCCAAAGTGGTATGGGTGGTCAGAATGGAGTTGTATGGCTCCACGACAGCAGTGGAGACCTGTGGAGCCGGATACACCGAGAACTCCAATTTCGCCTTTTTACCGTAATCCACAGAGAGTCGCTCCATCAAAAGGGAAGTGAATCCGGATCCAGTACCGCCTCCAAACGAATGGAAAACCAAAAATCCTTGTAGTCCGGTACAGTTGTCAGCCAGACGACGGATACGGTCCAGGGTCAAGTCGATGATCTCTTTTCCAATTGTATAATGACCACGGGCGTAGTTATTAGCGGCATCTTCTTTTCCGGTGATCAGTTGTTCCGGATGGAAGAGACTACGGTAGGTGCCGGTGCGGATCTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTC</canonical>
            <polymorphic>TCTAAAGTTCAAAATTCTCATATTCAAACTTTTCTTACCTCATTATCAACCATGAATGAGCAATCGGAGTGCTCCAAAGTGGTATGGGTGGTCAGAATGGAGTTGTATGGCTCCACGACAGCAGTGGAGACCTGTGGAGCCGGATACACCGAGAACTCCAATTTCGCCTTTTTACCGTAATCCACAGAGAGTCGCTCCATCAAAAGGGAAGTGAATCCGGATCCAGTACCGCCTCCAAACGAATGGAAAACCAAAAATCCTTGTAGTCCGGTACAGTTGTCAGCCAGACGACGGATACGGTCCAGGGTCAAGTCGATGATCTCTTTTCCAATTGTATAATGACCACGGGCGTAGTTATTAGCGGCATCTTCTTTTCCGGTGATCAGTTGTTCCGGATGGAAGAGACTACGGTAGGTGCCGGTGCGGATCTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAWAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGTCTGGAACATGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAGAAAATAGGGGAAAAATGAG</pcr_primer_p2>
		<pcr_amplicon_size>640</pcr_amplicon_size>
		<canonical_amplicon>CTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAWAAAAACGATAAACAACAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37715</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>76785</contig_pos>
        <strand></strand>
        <context>ttgcagttta[G/A]aactttttca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTA</left_flank>
        <right_flank>AACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTAT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCAATCGGAGTGCTCCAAAGTGGTATGGGTGGTCAGAATGGAGTTGTATGGCTCCACGACAGCAGTGGAGACCTGTGGAGCCGGATACACCGAGAACTCCAATTTCGCCTTTTTACCGTAATCCACAGAGAGTCGCTCCATCAAAAGGGAAGTGAATCCGGATCCAGTACCGCCTCCAAACGAATGGAAAACCAAAAATCCTTGTAGTCCGGTACAGTTGTCAGCCAGACGACGGATACGGTCCAGGGTCAAGTCGATGATCTCTTTTCCAATTGTATAATGACCACGGGCGTAGTTATTAGCGGCATCTTCTTTTCCGGTGATCAGTTGTTCCGGATGGAAGAGACTACGGTAGGTGCCGGTGCGGATCTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCC</canonical>
            <polymorphic>AGCAATCGGAGTGCTCCAAAGTGGTATGGGTGGTCAGAATGGAGTTGTATGGCTCCACGACAGCAGTGGAGACCTGTGGAGCCGGATACACCGAGAACTCCAATTTCGCCTTTTTACCGTAATCCACAGAGAGTCGCTCCATCAAAAGGGAAGTGAATCCGGATCCAGTACCGCCTCCAAACGAATGGAAAACCAAAAATCCTTGTAGTCCGGTACAGTTGTCAGCCAGACGACGGATACGGTCCAGGGTCAAGTCGATGATCTCTTTTCCAATTGTATAATGACCACGGGCGTAGTTATTAGCGGCATCTTCTTTTCCGGTGATCAGTTGTTCCGGATGGAAGAGACTACGGTAGGTGCCGGTGCGGATCTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTARAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCGTCTGGAACATGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAGAAAATAGGGGAAAAATGAG</pcr_primer_p2>
		<pcr_amplicon_size>640</pcr_amplicon_size>
		<canonical_amplicon>CTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTG</canonical_amplicon>
		<polymorphic_amplicon>CTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTARAACTTTTTCATAAATTTGCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37716</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>76955</contig_pos>
        <strand></strand>
        <context>cccaaaattt[C/T]cgrcttttcc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTT</left_flank>
        <right_flank>CGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGCCTCCAAACGAATGGAAAACCAAAAATCCTTGTAGTCCGGTACAGTTGTCAGCCAGACGACGGATACGGTCCAGGGTCAAGTCGATGATCTCTTTTCCAATTGTATAATGACCACGGGCGTAGTTATTAGCGGCATCTTCTTTTCCGGTGATCAGTTGTTCCGGATGGAAGAGACTACGGTAGGTGCCGGTGCGGATCTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTCATCCCAAGACTAGATGAGATGAAGGCTCAATGAGTTTTTATGTGTTTCCCCCTCCCCATCTCTTTTGGGGTGTTTCCCGTTTTTCAATGAATATCCAATGCGGCCCATTTTCCTCTTCCTCTTCTCCCCCAGTTTTTATATGAATAGTATAGGAAGAAGG</canonical>
            <polymorphic>CCGCCTCCAAACGAATGGAAAACCAAAAATCCTTGTAGTCCGGTACAGTTGTCAGCCAGACGACGGATACGGTCCAGGGTCAAGTCGATGATCTCTTTTCCAATTGTATAATGACCACGGGCGTAGTTATTAGCGGCATCTTCTTTTCCGGTGATCAGTTGTTCCGGATGGAAGAGACTACGGTAGGTGCCGGTGCGGATCTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTYCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTCATCCCAAGACTAGATGAGATGAAGGCTCAATGAGTTTTTATGTGTTTCCCCCTCCCCATCTCTTTTGGGGTGTTTCCCGTTTTTCAATGAATATCCAATGCGGCCCATTTTCCTCTTCCTCTTCTCCCCCAGTTTTTATATGAATAGTATAGGAAGAAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 310 108 40 26 16</canonical_bands>
                <polymorphic_bands>810 108 40 26 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCGTCTGGAACATGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAGAAAATAGGGGAAAAATGAG</pcr_primer_p2>
		<pcr_amplicon_size>640</pcr_amplicon_size>
		<canonical_amplicon>CTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>CTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTYCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37717</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>76958</contig_pos>
        <strand></strand>
        <context>aaaatttycg[G/A]cttttccaat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCG</left_flank>
        <right_flank>CTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAA</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTCCAAACGAATGGAAAACCAAAAATCCTTGTAGTCCGGTACAGTTGTCAGCCAGACGACGGATACGGTCCAGGGTCAAGTCGATGATCTCTTTTCCAATTGTATAATGACCACGGGCGTAGTTATTAGCGGCATCTTCTTTTCCGGTGATCAGTTGTTCCGGATGGAAGAGACTACGGTAGGTGCCGGTGCGGATCTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTCATCCCAAGACTAGATGAGATGAAGGCTCAATGAGTTTTTATGTGTTTCCCCCTCCCCATCTCTTTTGGGGTGTTTCCCGTTTTTCAATGAATATCCAATGCGGCCCATTTTCCTCTTCCTCTTCTCCCCCAGTTTTTATATGAATAGTATAGGAAGAAGGAAG</canonical>
            <polymorphic>CCTCCAAACGAATGGAAAACCAAAAATCCTTGTAGTCCGGTACAGTTGTCAGCCAGACGACGGATACGGTCCAGGGTCAAGTCGATGATCTCTTTTCCAATTGTATAATGACCACGGGCGTAGTTATTAGCGGCATCTTCTTTTCCGGTGATCAGTTGTTCCGGATGGAAGAGACTACGGTAGGTGCCGGTGCGGATCTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGRCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTCATCCCAAGACTAGATGAGATGAAGGCTCAATGAGTTTTTATGTGTTTCCCCCTCCCCATCTCTTTTGGGGTGTTTCCCGTTTTTCAATGAATATCCAATGCGGCCCATTTTCCTCTTCCTCTTCTCCCCCAGTTTTTATATGAATAGTATAGGAAGAAGGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 310 108 37 26 16</canonical_bands>
                <polymorphic_bands>813 108 37 26 16</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>339 261 83 78 67 60 52 42 18</canonical_bands>
                <polymorphic_bands>339 261 85 83 78 60 52 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCGTCTGGAACATGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAGAAAATAGGGGAAAAATGAG</pcr_primer_p2>
		<pcr_amplicon_size>640</pcr_amplicon_size>
		<canonical_amplicon>CTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>CTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGRCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37718</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>77044</contig_pos>
        <strand></strand>
        <context>cggcggcggc[G/A]atggaggagc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGC</left_flank>
        <right_flank>ATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCTCTTTTCCAATTGTATAATGACCACGGGCGTAGTTATTAGCGGCATCTTCTTTTCCGGTGATCAGTTGTTCCGGATGGAAGAGACTACGGTAGGTGCCGGTGCGGATCTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTCATCCCAAGACTAGATGAGATGAAGGCTCAATGAGTTTTTATGTGTTTCCCCCTCCCCATCTCTTTTGGGGTGTTTCCCGTTTTTCAATGAATATCCAATGCGGCCCATTTTCCTCTTCCTCTTCTCCCCCAGTTTTTATATGAATAGTATAGGAAGAAGGAAGAAAATATGAACAAGTTTTTGGGAACTAGAAACTTTCTTTTTTTGGGAAAACGTTTTGGTGAAAAAGTGAAGAATGAGGTTCCAGGA</canonical>
            <polymorphic>GATCTCTTTTCCAATTGTATAATGACCACGGGCGTAGTTATTAGCGGCATCTTCTTTTCCGGTGATCAGTTGTTCCGGATGGAAGAGACTACGGTAGGTGCCGGTGCGGATCTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCRATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTCATCCCAAGACTAGATGAGATGAAGGCTCAATGAGTTTTTATGTGTTTCCCCCTCCCCATCTCTTTTGGGGTGTTTCCCGTTTTTCAATGAATATCCAATGCGGCCCATTTTCCTCTTCCTCTTCTCCCCCAGTTTTTATATGAATAGTATAGGAAGAAGGAAGAAAATATGAACAAGTTTTTGGGAACTAGAAACTTTCTTTTTTTGGGAAAACGTTTTGGTGAAAAAGTGAAGAATGAGGTTCCAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGTCTGGAACATGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAGAAAATAGGGGAAAAATGAG</pcr_primer_p2>
		<pcr_amplicon_size>640</pcr_amplicon_size>
		<canonical_amplicon>CTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>CTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCRATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37719</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>77058</contig_pos>
        <strand></strand>
        <context>gaggagcgcg[A/T]gccaaktagt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCG</left_flank>
        <right_flank>GCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTATAATGACCACGGGCGTAGTTATTAGCGGCATCTTCTTTTCCGGTGATCAGTTGTTCCGGATGGAAGAGACTACGGTAGGTGCCGGTGCGGATCTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTCATCCCAAGACTAGATGAGATGAAGGCTCAATGAGTTTTTATGTGTTTCCCCCTCCCCATCTCTTTTGGGGTGTTTCCCGTTTTTCAATGAATATCCAATGCGGCCCATTTTCCTCTTCCTCTTCTCCCCCAGTTTTTATATGAATAGTATAGGAAGAAGGAAGAAAATATGAACAAGTTTTTGGGAACTAGAAACTTTCTTTTTTTGGGAAAACGTTTTGGTGAAAAAGTGAAGAATGAGGTTCCAGGAGGAGGAGAGGAACC</canonical>
            <polymorphic>TTGTATAATGACCACGGGCGTAGTTATTAGCGGCATCTTCTTTTCCGGTGATCAGTTGTTCCGGATGGAAGAGACTACGGTAGGTGCCGGTGCGGATCTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGWGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTCATCCCAAGACTAGATGAGATGAAGGCTCAATGAGTTTTTATGTGTTTCCCCCTCCCCATCTCTTTTGGGGTGTTTCCCGTTTTTCAATGAATATCCAATGCGGCCCATTTTCCTCTTCCTCTTCTCCCCCAGTTTTTATATGAATAGTATAGGAAGAAGGAAGAAAATATGAACAAGTTTTTGGGAACTAGAAACTTTCTTTTTTTGGGAAAACGTTTTGGTGAAAAAGTGAAGAATGAGGTTCCAGGAGGAGGAGAGGAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>291 261 160 83 78 67 42 18</canonical_bands>
                <polymorphic_bands>344 291 160 78 67 42 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCGTCTGGAACATGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAGAAAATAGGGGAAAAATGAG</pcr_primer_p2>
		<pcr_amplicon_size>640</pcr_amplicon_size>
		<canonical_amplicon>CTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>CTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGWGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37720</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>77064</contig_pos>
        <strand></strand>
        <context>cgcgwgccaa[G/T]tagttcatct</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAA</left_flank>
        <right_flank>TAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGACCACGGGCGTAGTTATTAGCGGCATCTTCTTTTCCGGTGATCAGTTGTTCCGGATGGAAGAGACTACGGTAGGTGCCGGTGCGGATCTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTCATCCCAAGACTAGATGAGATGAAGGCTCAATGAGTTTTTATGTGTTTCCCCCTCCCCATCTCTTTTGGGGTGTTTCCCGTTTTTCAATGAATATCCAATGCGGCCCATTTTCCTCTTCCTCTTCTCCCCCAGTTTTTATATGAATAGTATAGGAAGAAGGAAGAAAATATGAACAAGTTTTTGGGAACTAGAAACTTTCTTTTTTTGGGAAAACGTTTTGGTGAAAAAGTGAAGAATGAGGTTCCAGGAGGAGGAGAGGAACCCCTCTT</canonical>
            <polymorphic>AATGACCACGGGCGTAGTTATTAGCGGCATCTTCTTTTCCGGTGATCAGTTGTTCCGGATGGAAGAGACTACGGTAGGTGCCGGTGCGGATCTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAKTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTCATCCCAAGACTAGATGAGATGAAGGCTCAATGAGTTTTTATGTGTTTCCCCCTCCCCATCTCTTTTGGGGTGTTTCCCGTTTTTCAATGAATATCCAATGCGGCCCATTTTCCTCTTCCTCTTCTCCCCCAGTTTTTATATGAATAGTATAGGAAGAAGGAAGAAAATATGAACAAGTTTTTGGGAACTAGAAACTTTCTTTTTTTGGGAAAACGTTTTGGTGAAAAAGTGAAGAATGAGGTTCCAGGAGGAGGAGAGGAACCCCTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGTCTGGAACATGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAGAAAATAGGGGAAAAATGAG</pcr_primer_p2>
		<pcr_amplicon_size>640</pcr_amplicon_size>
		<canonical_amplicon>CTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>CTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAKTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37721</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>77120</contig_pos>
        <strand></strand>
        <context>caaaaaatgg[T/C]aaaccaaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGG</left_flank>
        <right_flank>AAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATGGAAGAGACTACGGTAGGTGCCGGTGCGGATCTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTCATCCCAAGACTAGATGAGATGAAGGCTCAATGAGTTTTTATGTGTTTCCCCCTCCCCATCTCTTTTGGGGTGTTTCCCGTTTTTCAATGAATATCCAATGCGGCCCATTTTCCTCTTCCTCTTCTCCCCCAGTTTTTATATGAATAGTATAGGAAGAAGGAAGAAAATATGAACAAGTTTTTGGGAACTAGAAACTTTCTTTTTTTGGGAAAACGTTTTGGTGAAAAAGTGAAGAATGAGGTTCCAGGAGGAGGAGAGGAACCCCTCTTGGGATCAACTCCGAAAACAACAGAAAGAAATGGGTCCTAACACGAAAACAAATGAG</canonical>
            <polymorphic>GGATGGAAGAGACTACGGTAGGTGCCGGTGCGGATCTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGYAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTCATCCCAAGACTAGATGAGATGAAGGCTCAATGAGTTTTTATGTGTTTCCCCCTCCCCATCTCTTTTGGGGTGTTTCCCGTTTTTCAATGAATATCCAATGCGGCCCATTTTCCTCTTCCTCTTCTCCCCCAGTTTTTATATGAATAGTATAGGAAGAAGGAAGAAAATATGAACAAGTTTTTGGGAACTAGAAACTTTCTTTTTTTGGGAAAACGTTTTGGTGAAAAAGTGAAGAATGAGGTTCCAGGAGGAGGAGAGGAACCCCTCTTGGGATCAACTCCGAAAACAACAGAAAGAAATGGGTCCTAACACGAAAACAAATGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 296 205</canonical_bands>
                <polymorphic_bands>704 296</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCGTCTGGAACATGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAGAAAATAGGGGAAAAATGAG</pcr_primer_p2>
		<pcr_amplicon_size>640</pcr_amplicon_size>
		<canonical_amplicon>CTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>CTCGTCTGGAACATGTTTTTTTGTGGGGGGCAAATTTGAAGGCGCATATCTCAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGYAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37722</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>77206</contig_pos>
        <strand></strand>
        <context>tgcggtatgc[G/T]cctttaaaTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGC</left_flank>
        <right_flank>CCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTCATCCCAAGACTAGATGAGATGAAGGCTCAATGAGTTTTTATGTGTTTCCCCCTCCCCATCTCTTTTGGGGTGTTTCCCGTTTTTCAATGAATATCCAATGCGGCCCATTTTCCTCTTCCTCTTCTCCCCCAGTTTTTATATGAATAGTATAGGAAGAAGGAAGAAAATATGAACAAGTTTTTGGGAACTAGAAACTTTCTTTTTTTGGGAAAACGTTTTGGTGAAAAAGTGAAGAATGAGGTTCCAGGAGGAGGAGAGGAACCCCTCTTGGGATCAACTCCGAAAACAACAGAAAGAAATGGGTCCTAACACGAAAACAAATGAGATTTTTAGAAAATAGCATTAAAATTCAAATCTGGGACGTTTAGAGCATCAAAATGAGTATAAACATGCCTAGGTTTGCTTAAAAAT</canonical>
            <polymorphic>CAACATTCTTGAGAGATAGAAAAAAACGATAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCKCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTCATCCCAAGACTAGATGAGATGAAGGCTCAATGAGTTTTTATGTGTTTCCCCCTCCCCATCTCTTTTGGGGTGTTTCCCGTTTTTCAATGAATATCCAATGCGGCCCATTTTCCTCTTCCTCTTCTCCCCCAGTTTTTATATGAATAGTATAGGAAGAAGGAAGAAAATATGAACAAGTTTTTGGGAACTAGAAACTTTCTTTTTTTGGGAAAACGTTTTGGTGAAAAAGTGAAGAATGAGGTTCCAGGAGGAGGAGAGGAACCCCTCTTGGGATCAACTCCGAAAACAACAGAAAGAAATGGGTCCTAACACGAAAACAAATGAGATTTTTAGAAAATAGCATTAAAATTCAAATCTGGGACGTTTAGAGCATCAAAATGAGTATAAACATGCCTAGGTTTGCTTAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 155 139 123 55 28</canonical_bands>
                <polymorphic_bands>623 155 139 55 28</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 327 170</canonical_bands>
                <polymorphic_bands>673 327</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCGTCTGGAACATGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAGAAAATAGGGGAAAAATGAG</pcr_primer_p2>
		<pcr_amplicon_size>640</pcr_amplicon_size>
		<canonical_amplicon>CGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>CKCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37723</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>77235</contig_pos>
        <strand></strand>
        <context>CTCTAGAAAT[C/A]TAMCTTCTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAAT</left_flank>
        <right_flank>TACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTCATCCCAAGACTAGATGAGATGAAGGCTCAATGAGTTTTTATGTGTTTCCCCCTCCCCATCTCTTTTGGGGTGTTTCCCGTTTTTCAATGAATATCCAATGCGGCCCATTTTCCTCTTCCTCTTCTCCCCCAGTTTTTATATGAATAGTATAGGAAGAAGGAAGAAAATATGAACAAGTTTTTGGGAACTAGAAACTTTCTTTTTTTGGGAAAACGTTTTGGTGAAAAAGTGAAGAATGAGGTTCCAGGAGGAGGAGAGGAACCCCTCTTGGGATCAACTCCGAAAACAACAGAAAGAAATGGGTCCTAACACGAAAACAAATGAGATTTTTAGAAAATAGCATTAAAATTCAAATCTGGGACGTTTAGAGCATCAAAATGAGTATAAACATGCCTAGGTTTGCTTAAAAATGAAATTTCTGGATTTTTGTGGTGGGACCC</canonical>
            <polymorphic>TAAACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATMTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTCATCCCAAGACTAGATGAGATGAAGGCTCAATGAGTTTTTATGTGTTTCCCCCTCCCCATCTCTTTTGGGGTGTTTCCCGTTTTTCAATGAATATCCAATGCGGCCCATTTTCCTCTTCCTCTTCTCCCCCAGTTTTTATATGAATAGTATAGGAAGAAGGAAGAAAATATGAACAAGTTTTTGGGAACTAGAAACTTTCTTTTTTTGGGAAAACGTTTTGGTGAAAAAGTGAAGAATGAGGTTCCAGGAGGAGGAGAGGAACCCCTCTTGGGATCAACTCCGAAAACAACAGAAAGAAATGGGTCCTAACACGAAAACAAATGAGATTTTTAGAAAATAGCATTAAAATTCAAATCTGGGACGTTTAGAGCATCAAAATGAGTATAAACATGCCTAGGTTTGCTTAAAAATGAAATTTCTGGATTTTTGTGGTGGGACCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGTCTGGAACATGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAGAAAATAGGGGAAAAATGAG</pcr_primer_p2>
		<pcr_amplicon_size>640</pcr_amplicon_size>
		<canonical_amplicon>TCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>TMTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37724</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>77238</contig_pos>
        <strand></strand>
        <context>TAGAAATMTA[C/A]CTTCTATAYC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTA</left_flank>
        <right_flank>CTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTCATCCCAAGACTAGATGAGATGAAGGCTCAATGAGTTTTTATGTGTTTCCCCCTCCCCATCTCTTTTGGGGTGTTTCCCGTTTTTCAATGAATATCCAATGCGGCCCATTTTCCTCTTCCTCTTCTCCCCCAGTTTTTATATGAATAGTATAGGAAGAAGGAAGAAAATATGAACAAGTTTTTGGGAACTAGAAACTTTCTTTTTTTGGGAAAACGTTTTGGTGAAAAAGTGAAGAATGAGGTTCCAGGAGGAGGAGAGGAACCCCTCTTGGGATCAACTCCGAAAACAACAGAAAGAAATGGGTCCTAACACGAAAACAAATGAGATTTTTAGAAAATAGCATTAAAATTCAAATCTGGGACGTTTAGAGCATCAAAATGAGTATAAACATGCCTAGGTTTGCTTAAAAATGAAATTTCTGGATTTTTGTGGTGGGACCCAAA</canonical>
            <polymorphic>ACAACAAAAATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTAMCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTCATCCCAAGACTAGATGAGATGAAGGCTCAATGAGTTTTTATGTGTTTCCCCCTCCCCATCTCTTTTGGGGTGTTTCCCGTTTTTCAATGAATATCCAATGCGGCCCATTTTCCTCTTCCTCTTCTCCCCCAGTTTTTATATGAATAGTATAGGAAGAAGGAAGAAAATATGAACAAGTTTTTGGGAACTAGAAACTTTCTTTTTTTGGGAAAACGTTTTGGTGAAAAAGTGAAGAATGAGGTTCCAGGAGGAGGAGAGGAACCCCTCTTGGGATCAACTCCGAAAACAACAGAAAGAAATGGGTCCTAACACGAAAACAAATGAGATTTTTAGAAAATAGCATTAAAATTCAAATCTGGGACGTTTAGAGCATCAAAATGAGTATAAACATGCCTAGGTTTGCTTAAAAATGAAATTTCTGGATTTTTGTGGTGGGACCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGTCTGGAACATGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAGAAAATAGGGGAAAAATGAG</pcr_primer_p2>
		<pcr_amplicon_size>640</pcr_amplicon_size>
		<canonical_amplicon>ACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTC</canonical_amplicon>
		<polymorphic_amplicon>AMCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37725</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>77247</contig_pos>
        <strand></strand>
        <context>AMCTTCTATA[T/C]CATTTTTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATA</left_flank>
        <right_flank>CATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTCAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTCATCCCAAGACTAGATGAGATGAAGGCTCAATGAGTTTTTATGTGTTTCCCCCTCCCCATCTCTTTTGGGGTGTTTCCCGTTTTTCAATGAATATCCAATGCGGCCCATTTTCCTCTTCCTCTTCTCCCCCAGTTTTTATATGAATAGTATAGGAAGAAGGAAGAAAATATGAACAAGTTTTTGGGAACTAGAAACTTTCTTTTTTTGGGAAAACGTTTTGGTGAAAAAGTGAAGAATGAGGTTCCAGGAGGAGGAGAGGAACCCCTCTTGGGATCAACTCCGAAAACAACAGAAAGAAATGGGTCCTAACACGAAAACAAATGAGATTTTTAGAAAATAGCATTAAAATTCAAATCTGGGACGTTTAGAGCATCAAAATGAGTATAAACATGCCTAGGTTTGCTTAAAAATGAAATTTCTGGATTTTTGTGGTGGGACCCAAAACTTGAAAA</canonical>
            <polymorphic>ATGTATAGAATCTTATGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATAYCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTCATCCCAAGACTAGATGAGATGAAGGCTCAATGAGTTTTTATGTGTTTCCCCCTCCCCATCTCTTTTGGGGTGTTTCCCGTTTTTCAATGAATATCCAATGCGGCCCATTTTCCTCTTCCTCTTCTCCCCCAGTTTTTATATGAATAGTATAGGAAGAAGGAAGAAAATATGAACAAGTTTTTGGGAACTAGAAACTTTCTTTTTTTGGGAAAACGTTTTGGTGAAAAAGTGAAGAATGAGGTTCCAGGAGGAGGAGAGGAACCCCTCTTGGGATCAACTCCGAAAACAACAGAAAGAAATGGGTCCTAACACGAAAACAAATGAGATTTTTAGAAAATAGCATTAAAATTCAAATCTGGGACGTTTAGAGCATCAAAATGAGTATAAACATGCCTAGGTTTGCTTAAAAATGAAATTTCTGGATTTTTGTGGTGGGACCCAAAACTTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGTCTGGAACATGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTCTTGGGATGAGAAAATAGG</pcr_primer_p2>
		<pcr_amplicon_size>650</pcr_amplicon_size>
		<canonical_amplicon>ATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTCATCCCAAGAC</canonical_amplicon>
		<polymorphic_amplicon>AYCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTCATCCCAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37726</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>77262</contig_pos>
        <strand></strand>
        <context>TTTTGTGCTT[T/C]CTTGATCCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTT</left_flank>
        <right_flank>CTTGATCCCTGCTCATTTTTCCCCTATTTTCTCATCCCAAGACTAGATGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTCATCCCAAGACTAGATGAGATGAAGGCTCAATGAGTTTTTATGTGTTTCCCCCTCCCCATCTCTTTTGGGGTGTTTCCCGTTTTTCAATGAATATCCAATGCGGCCCATTTTCCTCTTCCTCTTCTCCCCCAGTTTTTATATGAATAGTATAGGAAGAAGGAAGAAAATATGAACAAGTTTTTGGGAACTAGAAACTTTCTTTTTTTGGGAAAACGTTTTGGTGAAAAAGTGAAGAATGAGGTTCCAGGAGGAGGAGAGGAACCCCTCTTGGGATCAACTCCGAAAACAACAGAAAGAAATGGGTCCTAACACGAAAACAAATGAGATTTTTAGAAAATAGCATTAAAATTCAAATCTGGGACGTTTAGAGCATCAAAATGAGTATAAACATGCCTAGGTTTGCTTAAAAATGAAATTTCTGGATTTTTGTGGTGGGACCCAAAACTTGAAAATATCGAAGTCAAGCA</canonical>
            <polymorphic>TGCTGAGCAATATTGCAGTTTAGAACTTTTTCATAAATTTGCTGGTTTTTGAGATACGCGTCTTTAAATTTATCGCGTCTCACGAAGCCAGTAAGGGCGCGTCAAATTTAAAAGCGTATATCTCAAGAGCCAGCGGAACTATCTAAAAGTTGTAAACTACAAAATTGCTCAGCATAAAATTTCCCAAAATTTCCGGCTTTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTYCTTGATCCCTGCTCATTTTTCCCCTATTTTCTCATCCCAAGACTAGATGAGATGAAGGCTCAATGAGTTTTTATGTGTTTCCCCCTCCCCATCTCTTTTGGGGTGTTTCCCGTTTTTCAATGAATATCCAATGCGGCCCATTTTCCTCTTCCTCTTCTCCCCCAGTTTTTATATGAATAGTATAGGAAGAAGGAAGAAAATATGAACAAGTTTTTGGGAACTAGAAACTTTCTTTTTTTGGGAAAACGTTTTGGTGAAAAAGTGAAGAATGAGGTTCCAGGAGGAGGAGAGGAACCCCTCTTGGGATCAACTCCGAAAACAACAGAAAGAAATGGGTCCTAACACGAAAACAAATGAGATTTTTAGAAAATAGCATTAAAATTCAAATCTGGGACGTTTAGAGCATCAAAATGAGTATAAACATGCCTAGGTTTGCTTAAAAATGAAATTTCTGGATTTTTGTGGTGGGACCCAAAACTTGAAAATATCGAAGTCAAGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>451 205 136 81 48 43 36</canonical_bands>
                <polymorphic_bands>487 205 136 81 48 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCGTCTGGAACATGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATCTCATCTAGTCTTGGGATGA</pcr_primer_p2>
		<pcr_amplicon_size>660</pcr_amplicon_size>
		<canonical_amplicon>TTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTCATCCCAAGACTAGATGAGAT</canonical_amplicon>
		<polymorphic_amplicon>TYCTTGATCCCTGCTCATTTTTCCCCTATTTTCTCATCCCAAGACTAGATGAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37727</snp_id>
        <super_contig>c012401232.Contig1</super_contig>
        <contig_pos>77460</contig_pos>
        <strand></strand>
        <context>AGAAGGAAGA[A/G]AATATGAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTCCTCTTCTCCCCCAGTTTTTATATGAATAGTATAGGAAGAAGGAAGA</left_flank>
        <right_flank>AATATGAACAAGTTTTTGGGAACTAGAAACTTTCTTTTTTTGGGAAAACG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTCATCCCAAGACTAGATGAGATGAAGGCTCAATGAGTTTTTATGTGTTTCCCCCTCCCCATCTCTTTTGGGGTGTTTCCCGTTTTTCAATGAATATCCAATGCGGCCCATTTTCCTCTTCCTCTTCTCCCCCAGTTTTTATATGAATAGTATAGGAAGAAGGAAGAAAATATGAACAAGTTTTTGGGAACTAGAAACTTTCTTTTTTTGGGAAAACGTTTTGGTGAAAAAGTGAAGAATGAGGTTCCAGGAGGAGGAGAGGAACCCCTCTTGGGATCAACTCCGAAAACAACAGAAAGAAATGGGTCCTAACACGAAAACAAATGAGATTTTTAGAAAATAGCATTAAAATTCAAATCTGGGACGTTTAGAGCATCAAAATGAGTATAAACATGCCTAGGTTTGCTTAAAAATGAAATTTCTGGATTTTTGTGGTGGGACCCAAAACTTGAAAATATCGAAGTCAAGCAAAACTAGTCGTGTTTAGACTCATTTCAAACCTCGCAAAAAGATACGCTCAAAAATATTAGTTTCACGAAATCTGTAAAAAAAATGAAGGTAGTTACGGTACAATTTCCAAAAAAAGCTGAATATTCGAGTAAAATTAAAAGTTGCTCTAACTTCTAAAAACTCGTCTGAAATTATGCAATACATTGATCTCTGAATTT</canonical>
            <polymorphic>TTTCCAATTTTTGTAGCTTTCTTCGTTTTCGAGTTATGCGCCTTTAAAAGTGGGCGACGCCCATCGGCAGTAGCGGCGGCGGCGATGGAGGAGCGCGAGCCAAGTAGTTCATCTTTAAAGGCGCATATCTCAAGAACCAGCAATATTATCAAAAAATGGTAAACCAAAAAAATGTGCGGAATTTCATTTTACACACTTTTGTAATTTACAATTTTTTGATAACTGTATTAGTTTTTGCGGTATGCGCCTTTAAATAGACGGTATCTCTAGAAATCTACCTTCTATATCATTTTTTGTGCTTTCTTGATCCCTGCTCATTTTTCCCCTATTTTCTCATCCCAAGACTAGATGAGATGAAGGCTCAATGAGTTTTTATGTGTTTCCCCCTCCCCATCTCTTTTGGGGTGTTTCCCGTTTTTCAATGAATATCCAATGCGGCCCATTTTCCTCTTCCTCTTCTCCCCCAGTTTTTATATGAATAGTATAGGAAGAAGGAAGARAATATGAACAAGTTTTTGGGAACTAGAAACTTTCTTTTTTTGGGAAAACGTTTTGGTGAAAAAGTGAAGAATGAGGTTCCAGGAGGAGGAGAGGAACCCCTCTTGGGATCAACTCCGAAAACAACAGAAAGAAATGGGTCCTAACACGAAAACAAATGAGATTTTTAGAAAATAGCATTAAAATTCAAATCTGGGACGTTTAGAGCATCAAAATGAGTATAAACATGCCTAGGTTTGCTTAAAAATGAAATTTCTGGATTTTTGTGGTGGGACCCAAAACTTGAAAATATCGAAGTCAAGCAAAACTAGTCGTGTTTAGACTCATTTCAAACCTCGCAAAAAGATACGCTCAAAAATATTAGTTTCACGAAATCTGTAAAAAAAATGAAGGTAGTTACGGTACAATTTCCAAAAAAAGCTGAATATTCGAGTAAAATTAAAAGTTGCTCTAACTTCTAAAAACTCGTCTGAAATTATGCAATACATTGATCTCTGAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCTCATCCCAAGACTAGAT</pcr_primer_p1>
		<pcr_primer_p2>ACCTCATTCTTCACTTTTTCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCTCATCCCAAGACTAGATGAGATGAAGGCTCAATGAGTTTTTATGTGTTTCCCCCTCCCCATCTCTTTTGGGGTGTTTCCCGTTTTTCAATGAATATCCAATGCGGCCCATTTTCCTCTTCCTCTTCTCCCCCAGTTTTTATATGAATAGTATAGGAAGAAGGAAGAAAATATGAACAAGTTTTTGGGAACTAGAAACTTTCTTTTTTTGGGAAAACGTTTTGGTGAAAAAGTGAAGAATGAGGT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCTCATCCCAAGACTAGATGAGATGAAGGCTCAATGAGTTTTTATGTGTTTCCCCCTCCCCATCTCTTTTGGGGTGTTTCCCGTTTTTCAATGAATATCCAATGCGGCCCATTTTCCTCTTCCTCTTCTCCCCCAGTTTTTATATGAATAGTATAGGAAGAAGGAAGARAATATGAACAAGTTTTTGGGAACTAGAAACTTTCTTTTTTTGGGAAAACGTTTTGGTGAAAAAGTGAAGAATGAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37728</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>69561</contig_pos>
        <strand></strand>
        <context>CTTGCTCaga[A/C]cattttaagg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAATTGAATCGTTTGGTGCAGTTGGCTCACAAAATTTCAGCTTGCTCAGA</left_flank>
        <right_flank>CATTTTAAGGCAAGTTACAGCTATTTGAAGTTTTGACCTATGCGGCGCGG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACCGTAACTTCTGCACTCTTAGAACTCTACGGATGGGATCGAATCGCATTGGTTTACTTCAAGAATGAGCTCAACTACTGTAGTGGAGTGATTGAAGACGTCGAAACATCGCTATATGACGAGAATTATTCACAAATGGTTCAAGTTGTCATAAAAGAGGAGGTGGATCAGAATAATACGGAAAATTTTGTGGCTACATTGCAAATGATCAAAGCAAGAGCGAGAAGTGAGTTTTTTGCTGTATCTCAGCTAAAAATTAAGTTATCTAACTGAATTCTTGAGAATTCTGAGAAAAAATTATGCTGGAGAACTGTACAAAATTTCACCCTTCTAGCGTTAAGAGGAGCCGAGATACCCGTGTTTGAAAGCTTGACCAACGCGGCGCTGTAGCGTCGCGGTTGGCTAACTTTGTTCAGTGCAATCCTCAAAAGCTGAAATTTGATACACACAATTGAATCGTTTGGTGCAGTTGGCTCACAAAATTTCAGCTTGCTCAGAACATTTTAAGGCAAGTTACAGCTATTTGAAGTTTTGACCTATGCGGCGCGGTCGCGTCGCGGTTGGCTAACTTTGGTCAGAAGAATCCTAGCAACCTGAATTTTGTGAGGCATATAGAACAATCTATTCCATAGTGCTTATTAAATTTCAACGCGCTAGGACCGACCTGAGCAAAGCTAGCCGACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTTATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGT</canonical>
            <polymorphic>TACCGTAACTTCTGCACTCTTAGAACTCTACGGATGGGATCGAATCGCATTGGTTTACTTCAAGAATGAGCTCAACTACTGTAGTGGAGTGATTGAAGACGTCGAAACATCGCTATATGACGAGAATTATTCACAAATGGTTCAAGTTGTCATAAAAGAGGAGGTGGATCAGAATAATACGGAAAATTTTGTGGCTACATTGCAAATGATCAAAGCAAGAGCGAGAAGTGAGTTTTTTGCTGTATCTCAGCTAAAAATTAAGTTATCTAACTGAATTCTTGAGAATTCTGAGAAAAAATTATGCTGGAGAACTGTACAAAATTTCACCCTTCTAGCGTTAAGAGGAGCCGAGATACCCGTGTTTGAAAGCTTGACCAACGCGGCGCTGTAGCGTCGCGGTTGGCTAACTTTGTTCAGTGCAATCCTCAAAAGCTGAAATTTGATACACACAATTGAATCGTTTGGTGCAGTTGGCTCACAAAATTTCAGCTTGCTCAGAMCATTTTAAGGCAAGTTACAGCTATTTGAAGTTTTGACCTATGCGGCGCGGTCGCGTCGCGGTTGGCTAACTTTGGTCAGAAGAATCCTAGCAACCTGAATTTTGTGAGGCATATAGAACAATCTATTCCATAGTGCTTATTAAATTTCAACGCGCTAGGACCGACCTGAGCAAAGCTAGCCGACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTTATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGCTGAAATTTGATACACAC</pcr_primer_p1>
		<pcr_primer_p2>AGATTGTTCTATATGCCTCACAA</pcr_primer_p2>
		<pcr_amplicon_size>197</pcr_amplicon_size>
		<canonical_amplicon>AAAAGCTGAAATTTGATACACACAATTGAATCGTTTGGTGCAGTTGGCTCACAAAATTTCAGCTTGCTCAGAACATTTTAAGGCAAGTTACAGCTATTTGAAGTTTTGACCTATGCGGCGCGGTCGCGTCGCGGTTGGCTAACTTTGGTCAGAAGAATCCTAGCAACCTGAATTTTGTGAGGCATATAGAACAATCT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGCTGAAATTTGATACACACAATTGAATCGTTTGGTGCAGTTGGCTCACAAAATTTCAGCTTGCTCAGAMCATTTTAAGGCAAGTTACAGCTATTTGAAGTTTTGACCTATGCGGCGCGGTCGCGTCGCGGTTGGCTAACTTTGGTCAGAAGAATCCTAGCAACCTGAATTTTGTGAGGCATATAGAACAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37729</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>69694</contig_pos>
        <strand></strand>
        <context>CTATTCCATA[G/A]TGCTTATTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATCCTAGCAACCTGAATTTTGTGAGGCATATAGAACAATCTATTCCATA</left_flank>
        <right_flank>TGCTTATTAAATTTCAACGCGCTAGGACCGACCTGAGCAAAGCTAGCCGA</right_flank>
        <qual_score>35</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAATGGTTCAAGTTGTCATAAAAGAGGAGGTGGATCAGAATAATACGGAAAATTTTGTGGCTACATTGCAAATGATCAAAGCAAGAGCGAGAAGTGAGTTTTTTGCTGTATCTCAGCTAAAAATTAAGTTATCTAACTGAATTCTTGAGAATTCTGAGAAAAAATTATGCTGGAGAACTGTACAAAATTTCACCCTTCTAGCGTTAAGAGGAGCCGAGATACCCGTGTTTGAAAGCTTGACCAACGCGGCGCTGTAGCGTCGCGGTTGGCTAACTTTGTTCAGTGCAATCCTCAAAAGCTGAAATTTGATACACACAATTGAATCGTTTGGTGCAGTTGGCTCACAAAATTTCAGCTTGCTCAGAACATTTTAAGGCAAGTTACAGCTATTTGAAGTTTTGACCTATGCGGCGCGGTCGCGTCGCGGTTGGCTAACTTTGGTCAGAAGAATCCTAGCAACCTGAATTTTGTGAGGCATATAGAACAATCTATTCCATAGTGCTTATTAAATTTCAACGCGCTAGGACCGACCTGAGCAAAGCTAGCCGACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTTATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCC</canonical>
            <polymorphic>CAAATGGTTCAAGTTGTCATAAAAGAGGAGGTGGATCAGAATAATACGGAAAATTTTGTGGCTACATTGCAAATGATCAAAGCAAGAGCGAGAAGTGAGTTTTTTGCTGTATCTCAGCTAAAAATTAAGTTATCTAACTGAATTCTTGAGAATTCTGAGAAAAAATTATGCTGGAGAACTGTACAAAATTTCACCCTTCTAGCGTTAAGAGGAGCCGAGATACCCGTGTTTGAAAGCTTGACCAACGCGGCGCTGTAGCGTCGCGGTTGGCTAACTTTGTTCAGTGCAATCCTCAAAAGCTGAAATTTGATACACACAATTGAATCGTTTGGTGCAGTTGGCTCACAAAATTTCAGCTTGCTCAGAACATTTTAAGGCAAGTTACAGCTATTTGAAGTTTTGACCTATGCGGCGCGGTCGCGTCGCGGTTGGCTAACTTTGGTCAGAAGAATCCTAGCAACCTGAATTTTGTGAGGCATATAGAACAATCTATTCCATARTGCTTATTAAATTTCAACGCGCTAGGACCGACCTGAGCAAAGCTAGCCGACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTTATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>133 128 100 96 68 65 58 37 35 35 33 29 29 29 28 27 18 14 13 12 11 2</canonical_bands>
                <polymorphic_bands>162 128 100 96 68 65 58 37 35 35 33 29 29 28 27 18 14 13 12 11 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAATCCTAGCAACCTGAATTT</pcr_primer_p1>
		<pcr_primer_p2>ATGAAGCCTTATTTTAAAGTTGA</pcr_primer_p2>
		<pcr_amplicon_size>213</pcr_amplicon_size>
		<canonical_amplicon>AGAATCCTAGCAACCTGAATTTTGTGAGGCATATAGAACAATCTATTCCATAGTGCTTATTAAATTTCAACGCGCTAGGACCGACCTGAGCAAAGCTAGCCGACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTTATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCAT</canonical_amplicon>
		<polymorphic_amplicon>AGAATCCTAGCAACCTGAATTTTGTGAGGCATATAGAACAATCTATTCCATARTGCTTATTAAATTTCAACGCGCTAGGACCGACCTGAGCAAAGCTAGCCGACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTTATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37730</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>70519</contig_pos>
        <strand></strand>
        <context>TGCCAAATCC[G/C]AAGTTGMTAS</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCC</left_flank>
        <right_flank>AAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAATCATATTCTGCGCGCAAACCGGTGCTGAAAAACGGTTTTATATGATCCAAGCGGGCAAACAAGGCATG</canonical>
            <polymorphic>CTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCSAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAATCATATTCTGCGCGCAAACCGGTGCTGAAAAACGGTTTTATATGATCCAAGCGGGCAAACAAGGCATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>324 272 229 175</canonical_bands>
                <polymorphic_bands>499 272 229</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAGCTGAAATTTTGTGAATC</pcr_primer_p1>
		<pcr_primer_p2>GAAATTTCACAGAGACAATCAAG</pcr_primer_p2>
		<pcr_amplicon_size>222</pcr_amplicon_size>
		<canonical_amplicon>GAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCSAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTC</canonical_amplicon>
		<polymorphic_amplicon>GAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCSAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37731</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>70526</contig_pos>
        <strand></strand>
        <context>TCCSAAGTTG[A/C]TASGAAAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTG</left_flank>
        <right_flank>TAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAATCATATTCTGCGCGCAAACCGGTGCTGAAAAACGGTTTTATATGATCCAAGCGGGCAAACAAGGCATGAACACAA</canonical>
            <polymorphic>AAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGMTAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAATCATATTCTGCGCGCAAACCGGTGCTGAAAAACGGTTTTATATGATCCAAGCGGGCAAACAAGGCATGAACACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGCTGAAATTTTGTGAATC</pcr_primer_p1>
		<pcr_primer_p2>GAAATTTCACAGAGACAATCAAG</pcr_primer_p2>
		<pcr_amplicon_size>222</pcr_amplicon_size>
		<canonical_amplicon>GAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGMTAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTC</canonical_amplicon>
		<polymorphic_amplicon>GAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGMTAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37732</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>70529</contig_pos>
        <strand></strand>
        <context>SAAGTTGMTA[G/C]GAAAGTTCTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>ATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATA</left_flank>
        <right_flank>GAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAATCATATTCTGCGCGCAAACCGGTGCTGAAAAACGGTTTTATATGATCCAAGCGGGCAAACAAGGCATGAACACAAGTG</canonical>
            <polymorphic>TTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATASGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAATCATATTCTGCGCGCAAACCGGTGCTGAAAAACGGTTTTATATGATCCAAGCGGGCAAACAAGGCATGAACACAAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGCTGAAATTTTGTGAATC</pcr_primer_p1>
		<pcr_primer_p2>GAAATTTCACAGAGACAATCAAG</pcr_primer_p2>
		<pcr_amplicon_size>222</pcr_amplicon_size>
		<canonical_amplicon>GAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATASGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTC</canonical_amplicon>
		<polymorphic_amplicon>GAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATASGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37733</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>70553</contig_pos>
        <strand></strand>
        <context>aaagttagcc[G/A]accgcgacgc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCC</left_flank>
        <right_flank>ACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAATCATATTCTGCGCGCAAACCGGTGCTGAAAAACGGTTTTATATGATCCAAGCGGGCAAACAAGGCATGAACACAAGTGAATACGTTCATGTGATGCTATCCA</canonical>
            <polymorphic>AGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCRACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAATCATATTCTGCGCGCAAACCGGTGCTGAAAAACGGTTTTATATGATCCAAGCGGGCAAACAAGGCATGAACACAAGTGAATACGTTCATGTGATGCTATCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>325 173 173 151 151 27</canonical_bands>
                <polymorphic_bands>325 324 173 151 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAGCTGAAATTTTGTGAATC</pcr_primer_p1>
		<pcr_primer_p2>GAAATTTCACAGAGACAATCAAG</pcr_primer_p2>
		<pcr_amplicon_size>222</pcr_amplicon_size>
		<canonical_amplicon>GAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCRACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTC</canonical_amplicon>
		<polymorphic_amplicon>GAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCRACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37734</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>70764</contig_pos>
        <strand></strand>
        <context>tggaccgtaa[C/T]ttggcttaag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAA</left_flank>
        <right_flank>TTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAATCATATTCTGCGCGCAAACCGGTGCTGAAAAACGGTTTTATATGATCCAAGCGGGCAAACAAGGCATGAACACAAGTGAATACGTTCATGTGATGCTATCCATGAGGAGTGTCGGGTTTGGGGTGCAATCGGCGGTTGGAAAGAAGCCTCGTAAGTTTTTGATGGCCTAGAAATTTAGAAATTCCAAAATAAACTAGGTCAGCTGATTGTTTACAGTAAACTCTGGCCTTGCACCGATTTGGGAAGCATTTCAAGTGGCACCAGATGGATTGGAGGATTTGGCTAAAAGTGTGGCATCGAAAATGCTTGTGGT</canonical>
            <polymorphic>CAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAAYTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAATCATATTCTGCGCGCAAACCGGTGCTGAAAAACGGTTTTATATGATCCAAGCGGGCAAACAAGGCATGAACACAAGTGAATACGTTCATGTGATGCTATCCATGAGGAGTGTCGGGTTTGGGGTGCAATCGGCGGTTGGAAAGAAGCCTCGTAAGTTTTTGATGGCCTAGAAATTTAGAAATTCCAAAATAAACTAGGTCAGCTGATTGTTTACAGTAAACTCTGGCCTTGCACCGATTTGGGAAGCATTTCAAGTGGCACCAGATGGATTGGAGGATTTGGCTAAAAGTGTGGCATCGAAAATGCTTGTGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>495 323 182</canonical_bands>
                <polymorphic_bands>677 323</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTTGAATTTTTGTGAGTCAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTACTGTAACGATGCCAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>329</pcr_amplicon_size>
		<canonical_amplicon>ATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAAYTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37735</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>70790</contig_pos>
        <strand></strand>
        <context>cctaggaatc[T/C]gaaacttTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATC</left_flank>
        <right_flank>GAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAATCATATTCTGCGCGCAAACCGGTGCTGAAAAACGGTTTTATATGATCCAAGCGGGCAAACAAGGCATGAACACAAGTGAATACGTTCATGTGATGCTATCCATGAGGAGTGTCGGGTTTGGGGTGCAATCGGCGGTTGGAAAGAAGCCTCGTAAGTTTTTGATGGCCTAGAAATTTAGAAATTCCAAAATAAACTAGGTCAGCTGATTGTTTACAGTAAACTCTGGCCTTGCACCGATTTGGGAAGCATTTCAAGTGGCACCAGATGGATTGGAGGATTTGGCTAAAAGTGTGGCATCGAAAATGCTTGTGGTAGACTACAAGACTACAAACTACAAAC</canonical>
            <polymorphic>AGGCCTAGGATCTTGAATTTTTGTGCGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCGTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCYGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAATCATATTCTGCGCGCAAACCGGTGCTGAAAAACGGTTTTATATGATCCAAGCGGGCAAACAAGGCATGAACACAAGTGAATACGTTCATGTGATGCTATCCATGAGGAGTGTCGGGTTTGGGGTGCAATCGGCGGTTGGAAAGAAGCCTCGTAAGTTTTTGATGGCCTAGAAATTTAGAAATTCCAAAATAAACTAGGTCAGCTGATTGTTTACAGTAAACTCTGGCCTTGCACCGATTTGGGAAGCATTTCAAGTGGCACCAGATGGATTGGAGGATTTGGCTAAAAGTGTGGCATCGAAAATGCTTGTGGTAGACTACAAGACTACAAACTACAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTTGAATTTTTGTGAGTCAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTACTGTAACGATGCCAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>329</pcr_amplicon_size>
		<canonical_amplicon>ATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCYGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37736</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>70891</contig_pos>
        <strand></strand>
        <context>accatatctt[C/A]yctcctagac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTT</left_flank>
        <right_flank>GCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAATCATATTCTGCGCGCAAACCGGTGCTGAAAAACGGTTTTATATGATCCAAGCGGGCAAACAAGGCATGAACACAAGTGAATACGTTCATGTGATGCTATCCATGAGGAGTGTCGGGTTTGGGGTGCAATCGGCGGTTGGAAAGAAGCCTCGTAAGTTTTTGATGGCCTAGAAATTTAGAAATTCCAAAATAAACTAGGTCAGCTGATTGTTTACAGTAAACTCTGGCCTTGCACCGATTTGGGAAGCATTTCAAGTGGCACCAGATGGATTGGAGGATTTGGCTAAAAGTGTGGCATCGAAAATGCTTGTGGTAGACTACAAGACTACAAACTACAAACTACAGTAACCCATTTTTCAGATTGATTTGAGCAGTGACATCAGGGATAAAGAATTTCTACAATATATGACCAAAAATATAGTTTATGCGATTCGAGAGCCT</canonical>
            <polymorphic>ACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTMGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAATCATATTCTGCGCGCAAACCGGTGCTGAAAAACGGTTTTATATGATCCAAGCGGGCAAACAAGGCATGAACACAAGTGAATACGTTCATGTGATGCTATCCATGAGGAGTGTCGGGTTTGGGGTGCAATCGGCGGTTGGAAAGAAGCCTCGTAAGTTTTTGATGGCCTAGAAATTTAGAAATTCCAAAATAAACTAGGTCAGCTGATTGTTTACAGTAAACTCTGGCCTTGCACCGATTTGGGAAGCATTTCAAGTGGCACCAGATGGATTGGAGGATTTGGCTAAAAGTGTGGCATCGAAAATGCTTGTGGTAGACTACAAGACTACAAACTACAAACTACAGTAACCCATTTTTCAGATTGATTTGAGCAGTGACATCAGGGATAAAGAATTTCTACAATATATGACCAAAAATATAGTTTATGCGATTCGAGAGCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTTGAATTTTTGTGAGTCAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTACTGTAACGATGCCAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>329</pcr_amplicon_size>
		<canonical_amplicon>ATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTMGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37737</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>70892</contig_pos>
        <strand>+</strand>
        <context>ccatatcttm[C/T]ctcctagaca</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTC</left_flank>
        <right_flank>CTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAATCATATTCTGCGCGCAAACCGGTGCTGAAAAACGGTTTTATATGATCCAAGCGGGCAAACAAGGCATGAACACAAGTGAATACGTTCATGTGATGCTATCCATGAGGAGTGTCGGGTTTGGGGTGCAATCGGCGGTTGGAAAGAAGCCTCGTAAGTTTTTGATGGCCTAGAAATTTAGAAATTCCAAAATAAACTAGGTCAGCTGATTGTTTACAGTAAACTCTGGCCTTGCACCGATTTGGGAAGCATTTCAAGTGGCACCAGATGGATTGGAGGATTTGGCTAAAAGTGTGGCATCGAAAATGCTTGTGGTAGACTACAAGACTACAAACTACAAACTACAGTAACCCATTTTTCAGATTGATTTGAGCAGTGACATCAGGGATAAAGAATTTCTACAATATATGACCAAAAATATAGTTTATGCGATTCGAGAGCCTC</canonical>
            <polymorphic>CCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCAAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCYCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAATCATATTCTGCGCGCAAACCGGTGCTGAAAAACGGTTTTATATGATCCAAGCGGGCAAACAAGGCATGAACACAAGTGAATACGTTCATGTGATGCTATCCATGAGGAGTGTCGGGTTTGGGGTGCAATCGGCGGTTGGAAAGAAGCCTCGTAAGTTTTTGATGGCCTAGAAATTTAGAAATTCCAAAATAAACTAGGTCAGCTGATTGTTTACAGTAAACTCTGGCCTTGCACCGATTTGGGAAGCATTTCAAGTGGCACCAGATGGATTGGAGGATTTGGCTAAAAGTGTGGCATCGAAAATGCTTGTGGTAGACTACAAGACTACAAACTACAAACTACAGTAACCCATTTTTCAGATTGATTTGAGCAGTGACATCAGGGATAAAGAATTTCTACAATATATGACCAAAAATATAGTTTATGCGATTCGAGAGCCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTTGAATTTTTGTGAGTCAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTACTGTAACGATGCCAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>329</pcr_amplicon_size>
		<canonical_amplicon>ATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCYCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37738</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>70927</contig_pos>
        <strand></strand>
        <context>AGTTTCCTAA[T/C]TTAACTTTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAA</left_flank>
        <right_flank>TTAACTTTGGCATCGTTACAGTAATCATATTCTGCGCGCAAACCGGTGCT</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAATCATATTCTGCGCGCAAACCGGTGCTGAAAAACGGTTTTATATGATCCAAGCGGGCAAACAAGGCATGAACACAAGTGAATACGTTCATGTGATGCTATCCATGAGGAGTGTCGGGTTTGGGGTGCAATCGGCGGTTGGAAAGAAGCCTCGTAAGTTTTTGATGGCCTAGAAATTTAGAAATTCCAAAATAAACTAGGTCAGCTGATTGTTTACAGTAAACTCTGGCCTTGCACCGATTTGGGAAGCATTTCAAGTGGCACCAGATGGATTGGAGGATTTGGCTAAAAGTGTGGCATCGAAAATGCTTGTGGTAGACTACAAGACTACAAACTACAAACTACAGTAACCCATTTTTCAGATTGATTTGAGCAGTGACATCAGGGATAAAGAATTTCTACAATATATGACCAAAAATATAGTTTATGCGATTCGAGAGCCTCCACTGAGCTGTATGGCGCCGGAATGTCTCGCTGCA</canonical>
            <polymorphic>AAACTGTAATAACTCGGCTCAACATGACCCTGGAAAGCTGAAATTTTGTGAATCAACTTTAAAATAAGGCTTCATTGTGCTTGCCAAATCCGAAGTTGATAGGAAAGTTCTAAGCAAAGTTAGCCGACCGCGACGCAACCGCCACGCGTAGGTCAAAACTTCAAAGGTCTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAAYTTAACTTTGGCATCGTTACAGTAATCATATTCTGCGCGCAAACCGGTGCTGAAAAACGGTTTTATATGATCCAAGCGGGCAAACAAGGCATGAACACAAGTGAATACGTTCATGTGATGCTATCCATGAGGAGTGTCGGGTTTGGGGTGCAATCGGCGGTTGGAAAGAAGCCTCGTAAGTTTTTGATGGCCTAGAAATTTAGAAATTCCAAAATAAACTAGGTCAGCTGATTGTTTACAGTAAACTCTGGCCTTGCACCGATTTGGGAAGCATTTCAAGTGGCACCAGATGGATTGGAGGATTTGGCTAAAAGTGTGGCATCGAAAATGCTTGTGGTAGACTACAAGACTACAAACTACAAACTACAGTAACCCATTTTTCAGATTGATTTGAGCAGTGACATCAGGGATAAAGAATTTCTACAATATATGACCAAAAATATAGTTTATGCGATTCGAGAGCCTCCACTGAGCTGTATGGCGCCGGAATGTCTCGCTGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>211 198 161 130 119 86 46 41 8</canonical_bands>
                <polymorphic_bands>317 211 161 130 86 46 41 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTGAATTTTTGTGAGTCAACTAT</pcr_primer_p1>
		<pcr_primer_p2>CCGCTTGGATCATATAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>380</pcr_amplicon_size>
		<canonical_amplicon>CTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAATTTAACTTTGGCATCGTTACAGTAATCATATTCTGCGCGCAAACCGGTGCTGAAAAACGGTTTTATATGATCCAAGCGG</canonical_amplicon>
		<polymorphic_amplicon>CTTGAATTTTTGTGAGTCAACTATTAAAACAGACTTGATTGTCTCTGTGAAATTTCAAAGTGCTAGGACCCTCCTGAGGTAAGTTAGCCTACCGCGACGCGACCGCAACGCGTAGGTCAAAACTTCCATGGACCGTAACTTGGCTTAAGATGGTCCTAGGAATCTGAAACTTTGTGAGCCAATTGGAACAAATGGTTTGAATATGCTCACTAAAAACGCGACGCAACCGCAACGCGTAGGTCAAAACTTCAAATGACCATATCTTCGCTCCTAGACATCATAGAAGGTTCAAGTTTCCTAAYTTAACTTTGGCATCGTTACAGTAATCATATTCTGCGCGCAAACCGGTGCTGAAAAACGGTTTTATATGATCCAAGCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37739</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>72562</contig_pos>
        <strand>+</strand>
        <context>TGGCCCGTAA[C/G]TAGGYTAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCAAAGTCAGCAAGCCGCAACGCGTAGCTCAAAACTTCTATGGCCCGTAA</left_flank>
        <right_flank>TAGGCTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCGGTCGCGTCGCGTTCGGCTAACTTTGCATAGGACGGCCCTAAAGGTTCGAAATTTGATAAGCAAAGTACAATCGTTTAGTGCAATTGACTCATACAATTTCAGCGTTCTAAGGCAATTTTCAGCCAAATTATAGCCATCTGAAGTTTTGACCTACGCGGCGCGGTCGCGTCGCGTTTGGCTAACTTTGCTTAGGACGGTCCTAGAGGTTCTAAATTTGATAAGCAAAATATAATAGTTTGGTGCAGTTGACTCATAAAATTTCAGCTCGCTAGCTCTATGCTGAGCAAAGTTACAGCTATTCGTAGTTATGACCTACGCGGCGCGGCTGCGTCGCGGTCGGCTAACTTTGCTCAGAGCGGTCCTAGGAAGCTGAAATTTTGCATTTTTACTGAAAATATCAGTTTCACTGCTCTGACCAAATTTCAAAGCTTTAGGACCGTCCTGAGCAAAGTCAGCAAGCCGCAACGCGTAGCTCAAAACTTCTATGGCCCGTAACTAGGCTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAGCGCTAGGACCCTCCTGAGATAAGTTAGCCGACCGCGACGCGACCGCACCGCGTAGGTCAAAACTTTAGATGCTTGTAGCTTGGCGCTGAGTGGGTCGATTTGGCTGAAATTTTTTAGGTAAACTGAGTAGTATTTGTGTTTTGATCCTGGCTAAATTAAGCATATAAAACTATGAAAAAAAATTCCAGAAAGTCAGTTTGGCCTATCAAAACGAGTCGAGCGACGTTTGGCACTTTTGGGGAAGCACTCGACCATTGG</canonical>
            <polymorphic>CGCGGTCGCGTCGCGTTCGGCTAACTTTGCATAGGACGGCCCTAAAGGTTCGAAATTTGATAAGCAAAGTACAATCGTTTAGTGCAATTGACTCATACAATTTCAGCGTTCTAAGGCAATTTTCAGCCAAATTATAGCCATCTGAAGTTTTGACCTACGCGGCGCGGTCGCGTCGCGTTTGGCTAACTTTGCTTAGGACGGTCCTAGAGGTTCTAAATTTGATAAGCAAAATATAATAGTTTGGTGCAGTTGACTCATAAAATTTCAGCTCGCTAGCTCTATGCTGAGCAAAGTTACAGCTATTCGTAGTTATGACCTACGCGGCGCGGCTGCGTCGCGGTCGGCTAACTTTGCTCAGAGCGGTCCTAGGAAGCTGAAATTTTGCATTTTTACTGAAAATATCAGTTTCACTGCTCTGACCAAATTTCAAAGCTTTAGGACCGTCCTGAGCAAAGTCAGCAAGCCGCAACGCGTAGCTCAAAACTTCTATGGCCCGTAASTAGGCTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAGCGCTAGGACCCTCCTGAGATAAGTTAGCCGACCGCGACGCGACCGCACCGCGTAGGTCAAAACTTTAGATGCTTGTAGCTTGGCGCTGAGTGGGTCGATTTGGCTGAAATTTTTTAGGTAAACTGAGTAGTATTTGTGTTTTGATCCTGGCTAAATTAAGCATATAAAACTATGAAAAAAAATTCCAGAAAGTCAGTTTGGCCTATCAAAACGAGTCGAGCGACGTTTGGCACTTTTGGGGAAGCACTCGACCATTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>255 204 134 93 93 69 69 67 16</canonical_bands>
                <polymorphic_bands>255 204 150 93 93 69 69 67</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>382 292 203 123</canonical_bands>
                <polymorphic_bands>382 326 292</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTGAAATTTTGCATTTTTACT</pcr_primer_p1>
		<pcr_primer_p2>GGACCTAGCAATTTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>218</pcr_amplicon_size>
		<canonical_amplicon>GCTGAAATTTTGCATTTTTACTGAAAATATCAGTTTCACTGCTCTGACCAAATTTCAAAGCTTTAGGACCGTCCTGAGCAAAGTCAGCAAGCCGCAACGCGTAGCTCAAAACTTCTATGGCCCGTAACTAGGCTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCC</canonical_amplicon>
		<polymorphic_amplicon>GCTGAAATTTTGCATTTTTACTGAAAATATCAGTTTCACTGCTCTGACCAAATTTCAAAGCTTTAGGACCGTCCTGAGCAAAGTCAGCAAGCCGCAACGCGTAGCTCAAAACTTCTATGGCCCGTAASTAGGCTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37740</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>72567</contig_pos>
        <strand>+</strand>
        <context>CGTAASTAGG[C/T]TAAAATGGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCAGCAAGCCGCAACGCGTAGCTCAAAACTTCTATGGCCCGTAACTAGG</left_flank>
        <right_flank>TAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGCGTCGCGTTCGGCTAACTTTGCATAGGACGGCCCTAAAGGTTCGAAATTTGATAAGCAAAGTACAATCGTTTAGTGCAATTGACTCATACAATTTCAGCGTTCTAAGGCAATTTTCAGCCAAATTATAGCCATCTGAAGTTTTGACCTACGCGGCGCGGTCGCGTCGCGTTTGGCTAACTTTGCTTAGGACGGTCCTAGAGGTTCTAAATTTGATAAGCAAAATATAATAGTTTGGTGCAGTTGACTCATAAAATTTCAGCTCGCTAGCTCTATGCTGAGCAAAGTTACAGCTATTCGTAGTTATGACCTACGCGGCGCGGCTGCGTCGCGGTCGGCTAACTTTGCTCAGAGCGGTCCTAGGAAGCTGAAATTTTGCATTTTTACTGAAAATATCAGTTTCACTGCTCTGACCAAATTTCAAAGCTTTAGGACCGTCCTGAGCAAAGTCAGCAAGCCGCAACGCGTAGCTCAAAACTTCTATGGCCCGTAACTAGGCTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAGCGCTAGGACCCTCCTGAGATAAGTTAGCCGACCGCGACGCGACCGCACCGCGTAGGTCAAAACTTTAGATGCTTGTAGCTTGGCGCTGAGTGGGTCGATTTGGCTGAAATTTTTTAGGTAAACTGAGTAGTATTTGTGTTTTGATCCTGGCTAAATTAAGCATATAAAACTATGAAAAAAAATTCCAGAAAGTCAGTTTGGCCTATCAAAACGAGTCGAGCGACGTTTGGCACTTTTGGGGAAGCACTCGACCATTGGACACA</canonical>
            <polymorphic>TCGCGTCGCGTTCGGCTAACTTTGCATAGGACGGCCCTAAAGGTTCGAAATTTGATAAGCAAAGTACAATCGTTTAGTGCAATTGACTCATACAATTTCAGCGTTCTAAGGCAATTTTCAGCCAAATTATAGCCATCTGAAGTTTTGACCTACGCGGCGCGGTCGCGTCGCGTTTGGCTAACTTTGCTTAGGACGGTCCTAGAGGTTCTAAATTTGATAAGCAAAATATAATAGTTTGGTGCAGTTGACTCATAAAATTTCAGCTCGCTAGCTCTATGCTGAGCAAAGTTACAGCTATTCGTAGTTATGACCTACGCGGCGCGGCTGCGTCGCGGTCGGCTAACTTTGCTCAGAGCGGTCCTAGGAAGCTGAAATTTTGCATTTTTACTGAAAATATCAGTTTCACTGCTCTGACCAAATTTCAAAGCTTTAGGACCGTCCTGAGCAAAGTCAGCAAGCCGCAACGCGTAGCTCAAAACTTCTATGGCCCGTAACTAGGYTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAGCGCTAGGACCCTCCTGAGATAAGTTAGCCGACCGCGACGCGACCGCACCGCGTAGGTCAAAACTTTAGATGCTTGTAGCTTGGCGCTGAGTGGGTCGATTTGGCTGAAATTTTTTAGGTAAACTGAGTAGTATTTGTGTTTTGATCCTGGCTAAATTAAGCATATAAAACTATGAAAAAAAATTCCAGAAAGTCAGTTTGGCCTATCAAAACGAGTCGAGCGACGTTTGGCACTTTTGGGGAAGCACTCGACCATTGGACACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>87 86 71 62 59 54 51 51 51 47 45 41 32 31 30 29 25 23 19 16 15 15 13 12 11 11 8 5</canonical_bands>
                <polymorphic_bands>87 86 71 62 59 54 51 51 51 47 45 44 41 31 30 29 25 23 19 16 15 15 13 11 11 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTGAAATTTTGCATTTTTACT</pcr_primer_p1>
		<pcr_primer_p2>GGACCTAGCAATTTGGAGTT</pcr_primer_p2>
		<pcr_amplicon_size>218</pcr_amplicon_size>
		<canonical_amplicon>GCTGAAATTTTGCATTTTTACTGAAAATATCAGTTTCACTGCTCTGACCAAATTTCAAAGCTTTAGGACCGTCCTGAGCAAAGTCAGCAAGCCGCAACGCGTAGCTCAAAACTTCTATGGCCCGTAACTAGGCTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCC</canonical_amplicon>
		<polymorphic_amplicon>GCTGAAATTTTGCATTTTTACTGAAAATATCAGTTTCACTGCTCTGACCAAATTTCAAAGCTTTAGGACCGTCCTGAGCAAAGTCAGCAAGCCGCAACGCGTAGCTCAAAACTTCTATGGCCCGTAACTAGGYTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37741</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>72604</contig_pos>
        <strand>+</strand>
        <context>GTTAGCCAAY[C/T]AAACCAATAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCCGTAACTAGGCTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAAC</left_flank>
        <right_flank>AAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAGGTTCGAAATTTGATAAGCAAAGTACAATCGTTTAGTGCAATTGACTCATACAATTTCAGCGTTCTAAGGCAATTTTCAGCCAAATTATAGCCATCTGAAGTTTTGACCTACGCGGCGCGGTCGCGTCGCGTTTGGCTAACTTTGCTTAGGACGGTCCTAGAGGTTCTAAATTTGATAAGCAAAATATAATAGTTTGGTGCAGTTGACTCATAAAATTTCAGCTCGCTAGCTCTATGCTGAGCAAAGTTACAGCTATTCGTAGTTATGACCTACGCGGCGCGGCTGCGTCGCGGTCGGCTAACTTTGCTCAGAGCGGTCCTAGGAAGCTGAAATTTTGCATTTTTACTGAAAATATCAGTTTCACTGCTCTGACCAAATTTCAAAGCTTTAGGACCGTCCTGAGCAAAGTCAGCAAGCCGCAACGCGTAGCTCAAAACTTCTATGGCCCGTAACTAGGCTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAGCGCTAGGACCCTCCTGAGATAAGTTAGCCGACCGCGACGCGACCGCACCGCGTAGGTCAAAACTTTAGATGCTTGTAGCTTGGCGCTGAGTGGGTCGATTTGGCTGAAATTTTTTAGGTAAACTGAGTAGTATTTGTGTTTTGATCCTGGCTAAATTAAGCATATAAAACTATGAAAAAAAATTCCAGAAAGTCAGTTTGGCCTATCAAAACGAGTCGAGCGACGTTTGGCACTTTTGGGGAAGCACTCGACCATTGGACACACCGATTTGTGGATTCCTCGGAAAATCGTGCCCCATCC</canonical>
            <polymorphic>TAAAGGTTCGAAATTTGATAAGCAAAGTACAATCGTTTAGTGCAATTGACTCATACAATTTCAGCGTTCTAAGGCAATTTTCAGCCAAATTATAGCCATCTGAAGTTTTGACCTACGCGGCGCGGTCGCGTCGCGTTTGGCTAACTTTGCTTAGGACGGTCCTAGAGGTTCTAAATTTGATAAGCAAAATATAATAGTTTGGTGCAGTTGACTCATAAAATTTCAGCTCGCTAGCTCTATGCTGAGCAAAGTTACAGCTATTCGTAGTTATGACCTACGCGGCGCGGCTGCGTCGCGGTCGGCTAACTTTGCTCAGAGCGGTCCTAGGAAGCTGAAATTTTGCATTTTTACTGAAAATATCAGTTTCACTGCTCTGACCAAATTTCAAAGCTTTAGGACCGTCCTGAGCAAAGTCAGCAAGCCGCAACGCGTAGCTCAAAACTTCTATGGCCCGTAACTAGGCTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAACYAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAGCGCTAGGACCCTCCTGAGATAAGTTAGCCGACCGCGACGCGACCGCACCGCGTAGGTCAAAACTTTAGATGCTTGTAGCTTGGCGCTGAGTGGGTCGATTTGGCTGAAATTTTTTAGGTAAACTGAGTAGTATTTGTGTTTTGATCCTGGCTAAATTAAGCATATAAAACTATGAAAAAAAATTCCAGAAAGTCAGTTTGGCCTATCAAAACGAGTCGAGCGACGTTTGGCACTTTTGGGGAAGCACTCGACCATTGGACACACCGATTTGTGGATTCCTCGGAAAATCGTGCCCCATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTAGCTCAAAACTTCTATGG</pcr_primer_p1>
		<pcr_primer_p2>ATTTCGCAGAGACAATCAAG</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>CGTAGCTCAAAACTTCTATGGCCCGTAACTAGGCTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAAT</canonical_amplicon>
		<polymorphic_amplicon>CGTAGCTCAAAACTTCTATGGCCCGTAACTAGGCTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAACYAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37742</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>72675</contig_pos>
        <strand></strand>
        <context>gttagccgac[C/T]gcgacgtgac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGAC</left_flank>
        <right_flank>GCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGCAATTTTCAGCCAAATTATAGCCATCTGAAGTTTTGACCTACGCGGCGCGGTCGCGTCGCGTTTGGCTAACTTTGCTTAGGACGGTCCTAGAGGTTCTAAATTTGATAAGCAAAATATAATAGTTTGGTGCAGTTGACTCATAAAATTTCAGCTCGCTAGCTCTATGCTGAGCAAAGTTACAGCTATTCGTAGTTATGACCTACGCGGCGCGGCTGCGTCGCGGTCGGCTAACTTTGCTCAGAGCGGTCCTAGGAAGCTGAAATTTTGCATTTTTACTGAAAATATCAGTTTCACTGCTCTGACCAAATTTCAAAGCTTTAGGACCGTCCTGAGCAAAGTCAGCAAGCCGCAACGCGTAGCTCAAAACTTCTATGGCCCGTAACTAGGCTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAGCGCTAGGACCCTCCTGAGATAAGTTAGCCGACCGCGACGCGACCGCACCGCGTAGGTCAAAACTTTAGATGCTTGTAGCTTGGCGCTGAGTGGGTCGATTTGGCTGAAATTTTTTAGGTAAACTGAGTAGTATTTGTGTTTTGATCCTGGCTAAATTAAGCATATAAAACTATGAAAAAAAATTCCAGAAAGTCAGTTTGGCCTATCAAAACGAGTCGAGCGACGTTTGGCACTTTTGGGGAAGCACTCGACCATTGGACACACCGATTTGTGGATTCCTCGGAAAATCGTGCCCCATCCCGTTTTTCGATCAATATCGATTATTGATTTTTGTATTCGTTATTGTTGCCGGATTGCTCATTTTGGCAATT</canonical>
            <polymorphic>AGGCAATTTTCAGCCAAATTATAGCCATCTGAAGTTTTGACCTACGCGGCGCGGTCGCGTCGCGTTTGGCTAACTTTGCTTAGGACGGTCCTAGAGGTTCTAAATTTGATAAGCAAAATATAATAGTTTGGTGCAGTTGACTCATAAAATTTCAGCTCGCTAGCTCTATGCTGAGCAAAGTTACAGCTATTCGTAGTTATGACCTACGCGGCGCGGCTGCGTCGCGGTCGGCTAACTTTGCTCAGAGCGGTCCTAGGAAGCTGAAATTTTGCATTTTTACTGAAAATATCAGTTTCACTGCTCTGACCAAATTTCAAAGCTTTAGGACCGTCCTGAGCAAAGTCAGCAAGCCGCAACGCGTAGCTCAAAACTTCTATGGCCCGTAACTAGGCTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACYGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAGCGCTAGGACCCTCCTGAGATAAGTTAGCCGACCGCGACGCGACCGCACCGCGTAGGTCAAAACTTTAGATGCTTGTAGCTTGGCGCTGAGTGGGTCGATTTGGCTGAAATTTTTTAGGTAAACTGAGTAGTATTTGTGTTTTGATCCTGGCTAAATTAAGCATATAAAACTATGAAAAAAAATTCCAGAAAGTCAGTTTGGCCTATCAAAACGAGTCGAGCGACGTTTGGCACTTTTGGGGAAGCACTCGACCATTGGACACACCGATTTGTGGATTCCTCGGAAAATCGTGCCCCATCCCGTTTTTCGATCAATATCGATTATTGATTTTTGTATTCGTTATTGTTGCCGGATTGCTCATTTTGGCAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>321 146 146 143 134 46 16 11 11 6 5 5 5 5</canonical_bands>
                <polymorphic_bands>321 159 146 146 134 46 11 11 6 5 5 5 5</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>351 323 151 148 11 11 5</canonical_bands>
                <polymorphic_bands>351 323 159 151 11 5</polymorphic_bands>
            </assay>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>328 271 173 162 55 11</canonical_bands>
                <polymorphic_bands>433 328 173 55 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCCTAGAAATCTGCTTTTGTTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTGAAATTTCGCAGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>GTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAG</canonical_amplicon>
		<polymorphic_amplicon>GTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACYGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37743</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>72745</contig_pos>
        <strand>+</strand>
        <context>GGCCTAGGAT[C/T]YTGAATTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGAT</left_flank>
        <right_flank>TTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACTTTGCTTAGGACGGTCCTAGAGGTTCTAAATTTGATAAGCAAAATATAATAGTTTGGTGCAGTTGACTCATAAAATTTCAGCTCGCTAGCTCTATGCTGAGCAAAGTTACAGCTATTCGTAGTTATGACCTACGCGGCGCGGCTGCGTCGCGGTCGGCTAACTTTGCTCAGAGCGGTCCTAGGAAGCTGAAATTTTGCATTTTTACTGAAAATATCAGTTTCACTGCTCTGACCAAATTTCAAAGCTTTAGGACCGTCCTGAGCAAAGTCAGCAAGCCGCAACGCGTAGCTCAAAACTTCTATGGCCCGTAACTAGGCTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAGCGCTAGGACCCTCCTGAGATAAGTTAGCCGACCGCGACGCGACCGCACCGCGTAGGTCAAAACTTTAGATGCTTGTAGCTTGGCGCTGAGTGGGTCGATTTGGCTGAAATTTTTTAGGTAAACTGAGTAGTATTTGTGTTTTGATCCTGGCTAAATTAAGCATATAAAACTATGAAAAAAAATTCCAGAAAGTCAGTTTGGCCTATCAAAACGAGTCGAGCGACGTTTGGCACTTTTGGGGAAGCACTCGACCATTGGACACACCGATTTGTGGATTCCTCGGAAAATCGTGCCCCATCCCGTTTTTCGATCAATATCGATTATTGATTTTTGTATTCGTTATTGTTGCCGGATTGCTCATTTTGGCAATTTTCACATGTCTCACCTCAATGGTCAGAAACCAGAGAGCTGAGCAATCAAGGCTAAATTCTGAATGGCAAA</canonical>
            <polymorphic>TAACTTTGCTTAGGACGGTCCTAGAGGTTCTAAATTTGATAAGCAAAATATAATAGTTTGGTGCAGTTGACTCATAAAATTTCAGCTCGCTAGCTCTATGCTGAGCAAAGTTACAGCTATTCGTAGTTATGACCTACGCGGCGCGGCTGCGTCGCGGTCGGCTAACTTTGCTCAGAGCGGTCCTAGGAAGCTGAAATTTTGCATTTTTACTGAAAATATCAGTTTCACTGCTCTGACCAAATTTCAAAGCTTTAGGACCGTCCTGAGCAAAGTCAGCAAGCCGCAACGCGTAGCTCAAAACTTCTATGGCCCGTAACTAGGCTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATYTTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAGCGCTAGGACCCTCCTGAGATAAGTTAGCCGACCGCGACGCGACCGCACCGCGTAGGTCAAAACTTTAGATGCTTGTAGCTTGGCGCTGAGTGGGTCGATTTGGCTGAAATTTTTTAGGTAAACTGAGTAGTATTTGTGTTTTGATCCTGGCTAAATTAAGCATATAAAACTATGAAAAAAAATTCCAGAAAGTCAGTTTGGCCTATCAAAACGAGTCGAGCGACGTTTGGCACTTTTGGGGAAGCACTCGACCATTGGACACACCGATTTGTGGATTCCTCGGAAAATCGTGCCCCATCCCGTTTTTCGATCAATATCGATTATTGATTTTTGTATTCGTTATTGTTGCCGGATTGCTCATTTTGGCAATTTTCACATGTCTCACCTCAATGGTCAGAAACCAGAGAGCTGAGCAATCAAGGCTAAATTCTGAATGGCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>496 205 166 133</canonical_bands>
                <polymorphic_bands>701 166 133</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>262 256 172 148 90 72</canonical_bands>
                <polymorphic_bands>262 256 172 162 148</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCCTAGAAATCTGCTTTTGTTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTGAAATTTCGCAGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>GTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAG</canonical_amplicon>
		<polymorphic_amplicon>GTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATYTTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37744</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>72746</contig_pos>
        <strand>+</strand>
        <context>GCCTAGGATY[C/T]TGAATTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATC</left_flank>
        <right_flank>TGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTTTGCTTAGGACGGTCCTAGAGGTTCTAAATTTGATAAGCAAAATATAATAGTTTGGTGCAGTTGACTCATAAAATTTCAGCTCGCTAGCTCTATGCTGAGCAAAGTTACAGCTATTCGTAGTTATGACCTACGCGGCGCGGCTGCGTCGCGGTCGGCTAACTTTGCTCAGAGCGGTCCTAGGAAGCTGAAATTTTGCATTTTTACTGAAAATATCAGTTTCACTGCTCTGACCAAATTTCAAAGCTTTAGGACCGTCCTGAGCAAAGTCAGCAAGCCGCAACGCGTAGCTCAAAACTTCTATGGCCCGTAACTAGGCTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAGCGCTAGGACCCTCCTGAGATAAGTTAGCCGACCGCGACGCGACCGCACCGCGTAGGTCAAAACTTTAGATGCTTGTAGCTTGGCGCTGAGTGGGTCGATTTGGCTGAAATTTTTTAGGTAAACTGAGTAGTATTTGTGTTTTGATCCTGGCTAAATTAAGCATATAAAACTATGAAAAAAAATTCCAGAAAGTCAGTTTGGCCTATCAAAACGAGTCGAGCGACGTTTGGCACTTTTGGGGAAGCACTCGACCATTGGACACACCGATTTGTGGATTCCTCGGAAAATCGTGCCCCATCCCGTTTTTCGATCAATATCGATTATTGATTTTTGTATTCGTTATTGTTGCCGGATTGCTCATTTTGGCAATTTTCACATGTCTCACCTCAATGGTCAGAAACCAGAGAGCTGAGCAATCAAGGCTAAATTCTGAATGGCAAAT</canonical>
            <polymorphic>AACTTTGCTTAGGACGGTCCTAGAGGTTCTAAATTTGATAAGCAAAATATAATAGTTTGGTGCAGTTGACTCATAAAATTTCAGCTCGCTAGCTCTATGCTGAGCAAAGTTACAGCTATTCGTAGTTATGACCTACGCGGCGCGGCTGCGTCGCGGTCGGCTAACTTTGCTCAGAGCGGTCCTAGGAAGCTGAAATTTTGCATTTTTACTGAAAATATCAGTTTCACTGCTCTGACCAAATTTCAAAGCTTTAGGACCGTCCTGAGCAAAGTCAGCAAGCCGCAACGCGTAGCTCAAAACTTCTATGGCCCGTAACTAGGCTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCYTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAGCGCTAGGACCCTCCTGAGATAAGTTAGCCGACCGCGACGCGACCGCACCGCGTAGGTCAAAACTTTAGATGCTTGTAGCTTGGCGCTGAGTGGGTCGATTTGGCTGAAATTTTTTAGGTAAACTGAGTAGTATTTGTGTTTTGATCCTGGCTAAATTAAGCATATAAAACTATGAAAAAAAATTCCAGAAAGTCAGTTTGGCCTATCAAAACGAGTCGAGCGACGTTTGGCACTTTTGGGGAAGCACTCGACCATTGGACACACCGATTTGTGGATTCCTCGGAAAATCGTGCCCCATCCCGTTTTTCGATCAATATCGATTATTGATTTTTGTATTCGTTATTGTTGCCGGATTGCTCATTTTGGCAATTTTCACATGTCTCACCTCAATGGTCAGAAACCAGAGAGCTGAGCAATCAAGGCTAAATTCTGAATGGCAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCCTAGAAATCTGCTTTTGTTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTGAAATTTCGCAGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>GTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAG</canonical_amplicon>
		<polymorphic_amplicon>GTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCYTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37745</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>72768</contig_pos>
        <strand>+</strand>
        <context>GAGTCAACAA[C/T]AAAAACAGGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAA</left_flank>
        <right_flank>AAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAGCGCTAGGACCCTCC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGTTCTAAATTTGATAAGCAAAATATAATAGTTTGGTGCAGTTGACTCATAAAATTTCAGCTCGCTAGCTCTATGCTGAGCAAAGTTACAGCTATTCGTAGTTATGACCTACGCGGCGCGGCTGCGTCGCGGTCGGCTAACTTTGCTCAGAGCGGTCCTAGGAAGCTGAAATTTTGCATTTTTACTGAAAATATCAGTTTCACTGCTCTGACCAAATTTCAAAGCTTTAGGACCGTCCTGAGCAAAGTCAGCAAGCCGCAACGCGTAGCTCAAAACTTCTATGGCCCGTAACTAGGCTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAGCGCTAGGACCCTCCTGAGATAAGTTAGCCGACCGCGACGCGACCGCACCGCGTAGGTCAAAACTTTAGATGCTTGTAGCTTGGCGCTGAGTGGGTCGATTTGGCTGAAATTTTTTAGGTAAACTGAGTAGTATTTGTGTTTTGATCCTGGCTAAATTAAGCATATAAAACTATGAAAAAAAATTCCAGAAAGTCAGTTTGGCCTATCAAAACGAGTCGAGCGACGTTTGGCACTTTTGGGGAAGCACTCGACCATTGGACACACCGATTTGTGGATTCCTCGGAAAATCGTGCCCCATCCCGTTTTTCGATCAATATCGATTATTGATTTTTGTATTCGTTATTGTTGCCGGATTGCTCATTTTGGCAATTTTCACATGTCTCACCTCAATGGTCAGAAACCAGAGAGCTGAGCAATCAAGGCTAAATTCTGAATGGCAAATTCACGCCATCAAATTAAGAATT</canonical>
            <polymorphic>GAGGTTCTAAATTTGATAAGCAAAATATAATAGTTTGGTGCAGTTGACTCATAAAATTTCAGCTCGCTAGCTCTATGCTGAGCAAAGTTACAGCTATTCGTAGTTATGACCTACGCGGCGCGGCTGCGTCGCGGTCGGCTAACTTTGCTCAGAGCGGTCCTAGGAAGCTGAAATTTTGCATTTTTACTGAAAATATCAGTTTCACTGCTCTGACCAAATTTCAAAGCTTTAGGACCGTCCTGAGCAAAGTCAGCAAGCCGCAACGCGTAGCTCAAAACTTCTATGGCCCGTAACTAGGCTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAAYAAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAGCGCTAGGACCCTCCTGAGATAAGTTAGCCGACCGCGACGCGACCGCACCGCGTAGGTCAAAACTTTAGATGCTTGTAGCTTGGCGCTGAGTGGGTCGATTTGGCTGAAATTTTTTAGGTAAACTGAGTAGTATTTGTGTTTTGATCCTGGCTAAATTAAGCATATAAAACTATGAAAAAAAATTCCAGAAAGTCAGTTTGGCCTATCAAAACGAGTCGAGCGACGTTTGGCACTTTTGGGGAAGCACTCGACCATTGGACACACCGATTTGTGGATTCCTCGGAAAATCGTGCCCCATCCCGTTTTTCGATCAATATCGATTATTGATTTTTGTATTCGTTATTGTTGCCGGATTGCTCATTTTGGCAATTTTCACATGTCTCACCTCAATGGTCAGAAACCAGAGAGCTGAGCAATCAAGGCTAAATTCTGAATGGCAAATTCACGCCATCAAATTAAGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACTCCAAATTGCTAGGTC</pcr_primer_p1>
		<pcr_primer_p2>GGATCAAAACACAAATACTACTCA</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>CAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAGCGCTAGGACCCTCCTGAGATAAGTTAGCCGACCGCGACGCGACCGCACCGCGTAGGTCAAAACTTTAGATGCTTGTAGCTTGGCGCTGAGTGGGTCGATTTGGCTGAAATTTTTTAGGTAAACTGAGTAGTATTTGTGTTTTGATCC</canonical_amplicon>
		<polymorphic_amplicon>CAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAAYAAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAGCGCTAGGACCCTCCTGAGATAAGTTAGCCGACCGCGACGCGACCGCACCGCGTAGGTCAAAACTTTAGATGCTTGTAGCTTGGCGCTGAGTGGGTCGATTTGGCTGAAATTTTTTAGGTAAACTGAGTAGTATTTGTGTTTTGATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37746</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>72823</contig_pos>
        <strand></strand>
        <context>ccctcctgag[A/G]taagttagcc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAGGCTTGATTGTCTCTGCGAAATTTCAAAGCGCTAGGACCCTCCTGAG</left_flank>
        <right_flank>TAAGTTAGCCGACCGCGACGCGACCGCACCGCGTAGGTCAAAACTTTAGA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCAGCTCGCTAGCTCTATGCTGAGCAAAGTTACAGCTATTCGTAGTTATGACCTACGCGGCGCGGCTGCGTCGCGGTCGGCTAACTTTGCTCAGAGCGGTCCTAGGAAGCTGAAATTTTGCATTTTTACTGAAAATATCAGTTTCACTGCTCTGACCAAATTTCAAAGCTTTAGGACCGTCCTGAGCAAAGTCAGCAAGCCGCAACGCGTAGCTCAAAACTTCTATGGCCCGTAACTAGGCTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAGCGCTAGGACCCTCCTGAGATAAGTTAGCCGACCGCGACGCGACCGCACCGCGTAGGTCAAAACTTTAGATGCTTGTAGCTTGGCGCTGAGTGGGTCGATTTGGCTGAAATTTTTTAGGTAAACTGAGTAGTATTTGTGTTTTGATCCTGGCTAAATTAAGCATATAAAACTATGAAAAAAAATTCCAGAAAGTCAGTTTGGCCTATCAAAACGAGTCGAGCGACGTTTGGCACTTTTGGGGAAGCACTCGACCATTGGACACACCGATTTGTGGATTCCTCGGAAAATCGTGCCCCATCCCGTTTTTCGATCAATATCGATTATTGATTTTTGTATTCGTTATTGTTGCCGGATTGCTCATTTTGGCAATTTTCACATGTCTCACCTCAATGGTCAGAAACCAGAGAGCTGAGCAATCAAGGCTAAATTCTGAATGGCAAATTCACGCCATCAAATTAAGAATTCCCGAAAAAAAGGGGCGGAGACTTTCCACAGATTCTGAGAATTCCACAGTAACCA</canonical>
            <polymorphic>ATTTCAGCTCGCTAGCTCTATGCTGAGCAAAGTTACAGCTATTCGTAGTTATGACCTACGCGGCGCGGCTGCGTCGCGGTCGGCTAACTTTGCTCAGAGCGGTCCTAGGAAGCTGAAATTTTGCATTTTTACTGAAAATATCAGTTTCACTGCTCTGACCAAATTTCAAAGCTTTAGGACCGTCCTGAGCAAAGTCAGCAAGCCGCAACGCGTAGCTCAAAACTTCTATGGCCCGTAACTAGGCTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAGCGCTAGGACCCTCCTGAGRTAAGTTAGCCGACCGCGACGCGACCGCACCGCGTAGGTCAAAACTTTAGATGCTTGTAGCTTGGCGCTGAGTGGGTCGATTTGGCTGAAATTTTTTAGGTAAACTGAGTAGTATTTGTGTTTTGATCCTGGCTAAATTAAGCATATAAAACTATGAAAAAAAATTCCAGAAAGTCAGTTTGGCCTATCAAAACGAGTCGAGCGACGTTTGGCACTTTTGGGGAAGCACTCGACCATTGGACACACCGATTTGTGGATTCCTCGGAAAATCGTGCCCCATCCCGTTTTTCGATCAATATCGATTATTGATTTTTGTATTCGTTATTGTTGCCGGATTGCTCATTTTGGCAATTTTCACATGTCTCACCTCAATGGTCAGAAACCAGAGAGCTGAGCAATCAAGGCTAAATTCTGAATGGCAAATTCACGCCATCAAATTAAGAATTCCCGAAAAAAAGGGGCGGAGACTTTCCACAGATTCTGAGAATTCCACAGTAACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACAGGCTTGATTGTCTCT</pcr_primer_p1>
		<pcr_primer_p2>GTTTTGATAGGCCAAACTGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAGCGCTAGGACCCTCCTGAGATAAGTTAGCCGACCGCGACGCGACCGCACCGCGTAGGTCAAAACTTTAGATGCTTGTAGCTTGGCGCTGAGTGGGTCGATTTGGCTGAAATTTTTTAGGTAAACTGAGTAGTATTTGTGTTTTGATCCTGGCTAAATTAAGCATATAAAACTATGAAAAAAAATTCCAGAAAGTCAGTTTGGCCTATCAAAAC</canonical_amplicon>
		<polymorphic_amplicon>AAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAGCGCTAGGACCCTCCTGAGRTAAGTTAGCCGACCGCGACGCGACCGCACCGCGTAGGTCAAAACTTTAGATGCTTGTAGCTTGGCGCTGAGTGGGTCGATTTGGCTGAAATTTTTTAGGTAAACTGAGTAGTATTTGTGTTTTGATCCTGGCTAAATTAAGCATATAAAACTATGAAAAAAAATTCCAGAAAGTCAGTTTGGCCTATCAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37747</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>72852</contig_pos>
        <strand></strand>
        <context>cgcgaccgca[C/A]cgcgtaggtc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AAGCGCTAGGACCCTCCTGAGATAAGTTAGCCGACCGCGACGCGACCGCA</left_flank>
        <right_flank>CGCGTAGGTCAAAACTTTAGATGCTTGTAGCTTGGCGCTGAGTGGGTCGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTTACAGCTATTCGTAGTTATGACCTACGCGGCGCGGCTGCGTCGCGGTCGGCTAACTTTGCTCAGAGCGGTCCTAGGAAGCTGAAATTTTGCATTTTTACTGAAAATATCAGTTTCACTGCTCTGACCAAATTTCAAAGCTTTAGGACCGTCCTGAGCAAAGTCAGCAAGCCGCAACGCGTAGCTCAAAACTTCTATGGCCCGTAACTAGGCTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAGCGCTAGGACCCTCCTGAGATAAGTTAGCCGACCGCGACGCGACCGCACCGCGTAGGTCAAAACTTTAGATGCTTGTAGCTTGGCGCTGAGTGGGTCGATTTGGCTGAAATTTTTTAGGTAAACTGAGTAGTATTTGTGTTTTGATCCTGGCTAAATTAAGCATATAAAACTATGAAAAAAAATTCCAGAAAGTCAGTTTGGCCTATCAAAACGAGTCGAGCGACGTTTGGCACTTTTGGGGAAGCACTCGACCATTGGACACACCGATTTGTGGATTCCTCGGAAAATCGTGCCCCATCCCGTTTTTCGATCAATATCGATTATTGATTTTTGTATTCGTTATTGTTGCCGGATTGCTCATTTTGGCAATTTTCACATGTCTCACCTCAATGGTCAGAAACCAGAGAGCTGAGCAATCAAGGCTAAATTCTGAATGGCAAATTCACGCCATCAAATTAAGAATTCCCGAAAAAAAGGGGCGGAGACTTTCCACAGATTCTGAGAATTCCACAGTAACCAAAAGTTCCAAAGGATCCTCTTCGAAAAAT</canonical>
            <polymorphic>AAGTTACAGCTATTCGTAGTTATGACCTACGCGGCGCGGCTGCGTCGCGGTCGGCTAACTTTGCTCAGAGCGGTCCTAGGAAGCTGAAATTTTGCATTTTTACTGAAAATATCAGTTTCACTGCTCTGACCAAATTTCAAAGCTTTAGGACCGTCCTGAGCAAAGTCAGCAAGCCGCAACGCGTAGCTCAAAACTTCTATGGCCCGTAACTAGGCTAAAATGGTCCTAGAAATCTGCTTTTGTTAGCCAACTAAACCAATAGATTGAACCATGCTTGCCCAACTCCAAATTGCTAGGTCCGTCCGGAGCAAAGTTAGCCGACCGCGACGTGACCGCAACGCGTAGGTCAAAATTTCAAAGGTTTGTAGCTCGGCTTAAAATAGGCCTAGGATCTTGAATTTTTGTGAGTCAACAATAAAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAGCGCTAGGACCCTCCTGAGATAAGTTAGCCGACCGCGACGCGACCGCAMCGCGTAGGTCAAAACTTTAGATGCTTGTAGCTTGGCGCTGAGTGGGTCGATTTGGCTGAAATTTTTTAGGTAAACTGAGTAGTATTTGTGTTTTGATCCTGGCTAAATTAAGCATATAAAACTATGAAAAAAAATTCCAGAAAGTCAGTTTGGCCTATCAAAACGAGTCGAGCGACGTTTGGCACTTTTGGGGAAGCACTCGACCATTGGACACACCGATTTGTGGATTCCTCGGAAAATCGTGCCCCATCCCGTTTTTCGATCAATATCGATTATTGATTTTTGTATTCGTTATTGTTGCCGGATTGCTCATTTTGGCAATTTTCACATGTCTCACCTCAATGGTCAGAAACCAGAGAGCTGAGCAATCAAGGCTAAATTCTGAATGGCAAATTCACGCCATCAAATTAAGAATTCCCGAAAAAAAGGGGCGGAGACTTTCCACAGATTCTGAGAATTCCACAGTAACCAAAAGTTCCAAAGGATCCTCTTCGAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>430 174 151 148 70 11 11 5</canonical_bands>
                <polymorphic_bands>435 174 151 148 70 11 11</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>211 120 94 93 83 75 61 47 46 45 38 19 18 15 14 10 9 2</canonical_bands>
                <polymorphic_bands>211 138 120 94 83 75 61 47 46 38 19 18 15 14 10 9 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACAGGCTTGATTGTCTCT</pcr_primer_p1>
		<pcr_primer_p2>GTTTTGATAGGCCAAACTGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAGCGCTAGGACCCTCCTGAGATAAGTTAGCCGACCGCGACGCGACCGCACCGCGTAGGTCAAAACTTTAGATGCTTGTAGCTTGGCGCTGAGTGGGTCGATTTGGCTGAAATTTTTTAGGTAAACTGAGTAGTATTTGTGTTTTGATCCTGGCTAAATTAAGCATATAAAACTATGAAAAAAAATTCCAGAAAGTCAGTTTGGCCTATCAAAAC</canonical_amplicon>
		<polymorphic_amplicon>AAAACAGGCTTGATTGTCTCTGCGAAATTTCAAAGCGCTAGGACCCTCCTGAGATAAGTTAGCCGACCGCGACGCGACCGCAMCGCGTAGGTCAAAACTTTAGATGCTTGTAGCTTGGCGCTGAGTGGGTCGATTTGGCTGAAATTTTTTAGGTAAACTGAGTAGTATTTGTGTTTTGATCCTGGCTAAATTAAGCATATAAAACTATGAAAAAAAATTCCAGAAAGTCAGTTTGGCCTATCAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37748</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>90986</contig_pos>
        <strand>+</strand>
        <context>GAAAAAACTA[C/T]GAATTTTAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTA</left_flank>
        <right_flank>GAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTCTGAAATTCAAAACTAGCGATATTTGTAAGATTTCTTTTTTTTTAAATTTTCTAATTTTTAGAATTTTGCCCAAAAACTTATTTTTTCGATTTTTTTTCAAAAATTTCAAGAAGATTCTAGATTCTCTTCCTTCCGGATTATTCGAATTTTTGAATTTCCGGGCTTTAGAGTTCTAGAACTTAGAAAATTCTCTTTCCTTGTCAACTTAATGGGATTTTCGAATGTCTGAGATTCTGAATTTCTGAATATCTGAATTTCTGAGATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCA</canonical>
            <polymorphic>ATTTTTTCTGAAATTCAAAACTAGCGATATTTGTAAGATTTCTTTTTTTTTAAATTTTCTAATTTTTAGAATTTTGCCCAAAAACTTATTTTTTCGATTTTTTTTCAAAAATTTCAAGAAGATTCTAGATTCTCTTCCTTCCGGATTATTCGAATTTTTGAATTTCCGGGCTTTAGAGTTCTAGAACTTAGAAAATTCTCTTTCCTTGTCAACTTAATGGGATTTTCGAATGTCTGAGATTCTGAATTTCTGAATATCTGAATTTCTGAGATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTAYGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTTTGCCCAAAAACTTAT</pcr_primer_p1>
		<pcr_primer_p2>ATACTTTCTAGATTTTCGATTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>488</pcr_amplicon_size>
		<canonical_amplicon>GAATTTTGCCCAAAAACTTATTTTTTCGATTTTTTTTCAAAAATTTCAAGAAGATTCTAGATTCTCTTCCTTCCGGATTATTCGAATTTTTGAATTTCCGGGCTTTAGAGTTCTAGAACTTAGAAAATTCTCTTTCCTTGTCAACTTAATGGGATTTTCGAATGTCTGAGATTCTGAATTTCTGAATATCTGAATTTCTGAGATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTAT</canonical_amplicon>
		<polymorphic_amplicon>GAATTTTGCCCAAAAACTTATTTTTTCGATTTTTTTTCAAAAATTTCAAGAAGATTCTAGATTCTCTTCCTTCCGGATTATTCGAATTTTTGAATTTCCGGGCTTTAGAGTTCTAGAACTTAGAAAATTCTCTTTCCTTGTCAACTTAATGGGATTTTCGAATGTCTGAGATTCTGAATTTCTGAATATCTGAATTTCTGAGATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTAYGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37749</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>91046</contig_pos>
        <strand>+</strand>
        <context>AAAGTATTTT[C/T]CAGATTTCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTT</left_flank>
        <right_flank>CAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCT</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTTAGAATTTTGCCCAAAAACTTATTTTTTCGATTTTTTTTCAAAAATTTCAAGAAGATTCTAGATTCTCTTCCTTCCGGATTATTCGAATTTTTGAATTTCCGGGCTTTAGAGTTCTAGAACTTAGAAAATTCTCTTTCCTTGTCAACTTAATGGGATTTTCGAATGTCTGAGATTCTGAATTTCTGAATATCTGAATTTCTGAGATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTA</canonical>
            <polymorphic>AATTTTTAGAATTTTGCCCAAAAACTTATTTTTTCGATTTTTTTTCAAAAATTTCAAGAAGATTCTAGATTCTCTTCCTTCCGGATTATTCGAATTTTTGAATTTCCGGGCTTTAGAGTTCTAGAACTTAGAAAATTCTCTTTCCTTGTCAACTTAATGGGATTTTCGAATGTCTGAGATTCTGAATTTCTGAATATCTGAATTTCTGAGATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTYCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>263 175 122 81 79 35 29 14 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>263 175 122 93 81 35 29 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTTTGCCCAAAAACTTAT</pcr_primer_p1>
		<pcr_primer_p2>TGGAAAGAGAGAATTTAGAACCT</pcr_primer_p2>
		<pcr_amplicon_size>568</pcr_amplicon_size>
		<canonical_amplicon>GAATTTTGCCCAAAAACTTATTTTTTCGATTTTTTTTCAAAAATTTCAAGAAGATTCTAGATTCTCTTCCTTCCGGATTATTCGAATTTTTGAATTTCCGGGCTTTAGAGTTCTAGAACTTAGAAAATTCTCTTTCCTTGTCAACTTAATGGGATTTTCGAATGTCTGAGATTCTGAATTTCTGAATATCTGAATTTCTGAGATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCA</canonical_amplicon>
		<polymorphic_amplicon>GAATTTTGCCCAAAAACTTATTTTTTCGATTTTTTTTCAAAAATTTCAAGAAGATTCTAGATTCTCTTCCTTCCGGATTATTCGAATTTTTGAATTTCCGGGCTTTAGAGTTCTAGAACTTAGAAAATTCTCTTTCCTTGTCAACTTAATGGGATTTTCGAATGTCTGAGATTCTGAATTTCTGAATATCTGAATTTCTGAGATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTYCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37750</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>91210</contig_pos>
        <strand>+</strand>
        <context>TCTGAAAGTT[C/T]TGGWWWTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTT</left_flank>
        <right_flank>TGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGAATGTCTGAGATTCTGAATTTCTGAATATCTGAATTTCTGAGATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTG</canonical>
            <polymorphic>TTCGAATGTCTGAGATTCTGAATTTCTGAATATCTGAATTTCTGAGATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTYTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAATCTTGAGATTAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>ATCCTAGCGATACGATAACTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTYTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37751</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>91214</contig_pos>
        <strand>+</strand>
        <context>AAAGTTYTGG[A/T]WWTCCAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGG</left_flank>
        <right_flank>ATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGTCTGAGATTCTGAATTTCTGAATATCTGAATTTCTGAGATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTGGGTT</canonical>
            <polymorphic>AATGTCTGAGATTCTGAATTTCTGAATATCTGAATTTCTGAGATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGWATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTGGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>251 90 78 75 56 55 36 32 25 21 19 18 16 16 16 16 10 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>251 90 78 75 56 55 36 32 26 25 21 18 16 16 16 16 10 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>345 282 217 90 66</canonical_bands>
                <polymorphic_bands>562 282 90 66</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>187 90 75 64 56 47 39 36 32 26 25 21 19 16 16 16 16 16 10 10 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 5</canonical_bands>
                <polymorphic_bands>187 90 75 64 56 47 39 36 32 26 26 25 21 16 16 16 16 16 10 10 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAATCTTGAGATTAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>ATCCTAGCGATACGATAACTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGWATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37752</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>91215</contig_pos>
        <strand>+</strand>
        <context>AAGTTYTGGW[A/T]WTCCAAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGA</left_flank>
        <right_flank>TTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTCTGAGATTCTGAATTTCTGAATATCTGAATTTCTGAGATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTGGGTTT</canonical>
            <polymorphic>ATGTCTGAGATTCTGAATTTCTGAATATCTGAATTTCTGAGATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAWTTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTGGGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>251 90 78 75 56 55 36 32 25 21 19 18 16 16 16 15 11 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>251 90 78 75 56 55 36 32 26 25 21 18 16 16 16 15 11 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>345 281 217 90 67</canonical_bands>
                <polymorphic_bands>562 281 90 67</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>187 90 75 64 56 47 39 36 32 26 25 21 19 16 16 16 16 15 11 10 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 5</canonical_bands>
                <polymorphic_bands>187 90 75 64 56 47 39 36 32 26 26 25 21 16 16 16 16 15 11 10 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAATCTTGAGATTAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>ATCCTAGCGATACGATAACTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAWTTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37753</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>91216</contig_pos>
        <strand>+</strand>
        <context>AGTTYTGGWW[A/T]TCCAAATTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAA</left_flank>
        <right_flank>TCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTCTGAGATTCTGAATTTCTGAATATCTGAATTTCTGAGATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTGGGTTTG</canonical>
            <polymorphic>TGTCTGAGATTCTGAATTTCTGAATATCTGAATTTCTGAGATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAAWTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTGGGTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>251 90 78 75 56 55 36 32 25 21 19 18 16 16 16 14 12 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>251 90 78 75 56 55 36 32 26 25 21 18 16 16 16 14 12 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>345 280 217 90 68</canonical_bands>
                <polymorphic_bands>562 280 90 68</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>187 90 75 64 56 47 39 36 32 26 25 21 19 16 16 16 16 14 12 10 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 5</canonical_bands>
                <polymorphic_bands>187 90 75 64 56 47 39 36 32 26 26 25 21 16 16 16 16 14 12 10 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAATCTTGAGATTAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>ATCCTAGCGATACGATAACTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAAWTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37754</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>91245</contig_pos>
        <strand>+</strand>
        <context>CTTGACTTTT[A/T]WRAYTTGACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTT</left_flank>
        <right_flank>AAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTTCTGAGATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTGGGTTTGGCGGGAATTTCAAAAAAAAAAAAGAAAAA</canonical>
            <polymorphic>GAATTTCTGAGATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTWAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTGGGTTTGGCGGGAATTTCAAAAAAAAAAAAGAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>445 400 99 33 23</canonical_bands>
                <polymorphic_bands>445 400 122 33</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>440 247 152 68 33 23 22 9 6</canonical_bands>
                <polymorphic_bands>440 247 152 91 33 22 9 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAATCTTGAGATTAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>ATCCTAGCGATACGATAACTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTWAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37755</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>91246</contig_pos>
        <strand>+</strand>
        <context>TTGACTTTTW[A/T]RAYTTGACTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTA</left_flank>
        <right_flank>AACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTCTGAGATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTGGGTTTGGCGGGAATTTCAAAAAAAAAAAAGAAAAAT</canonical>
            <polymorphic>AATTTCTGAGATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAWAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTGGGTTTGGCGGGAATTTCAAAAAAAAAAAAGAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>446 399 99 33 23</canonical_bands>
                <polymorphic_bands>446 399 122 33</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>441 246 152 68 33 23 22 9 6</canonical_bands>
                <polymorphic_bands>441 246 152 91 33 22 9 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAATCTTGAGATTAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>ATCCTAGCGATACGATAACTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAWAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37756</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>91247</contig_pos>
        <strand>+</strand>
        <context>TGACTTTTWW[A/G]AYTTGACTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAA</left_flank>
        <right_flank>ACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCTGAGATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTGGGTTTGGCGGGAATTTCAAAAAAAAAAAAGAAAAATT</canonical>
            <polymorphic>ATTTCTGAGATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAARACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTGGGTTTGGCGGGAATTTCAAAAAAAAAAAAGAAAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>447 398 99 33 23</canonical_bands>
                <polymorphic_bands>447 398 122 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAATCTTGAGATTAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>ATCCTAGCGATACGATAACTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAARACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37757</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>91249</contig_pos>
        <strand>+</strand>
        <context>ACTTTTWWRA[C/T]TTGACTTGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAA</left_flank>
        <right_flank>TTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGAGATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTGGGTTTGGCGGGAATTTCAAAAAAAAAAAAGAAAAATTGA</canonical>
            <polymorphic>TTCTGAGATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAAYTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTGGGTTTGGCGGGAATTTCAAAAAAAAAAAAGAAAAATTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAATCTTGAGATTAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>ATCCTAGCGATACGATAACTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAAYTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37758</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>91322</contig_pos>
        <strand>+</strand>
        <context>tttttttCTT[G/T]MASWKTWTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTT</left_flank>
        <right_flank>AACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTGGGTTTGGCGGGAATTTCAAAAAAAAAAAAGAAAAATTGAAAAAATATTTTTTAAAAGTTTTCAGTTCTAAAAGGTTCAAGTTGGCTCAAAATAATCATAAAAATCAAATCAG</canonical>
            <polymorphic>TCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTKAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTGGGTTTGGCGGGAATTTCAAAAAAAAAAAAGAAAAATTGAAAAAATATTTTTTAAAAGTTTTCAGTTCTAAAAGGTTCAAGTTGGCTCAAAATAATCATAAAAATCAAATCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>254 249 196 84 67 63 39 25 14 9</canonical_bands>
                <polymorphic_bands>338 249 196 67 63 39 25 14 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAATCTTGAGATTAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>ATCCTAGCGATACGATAACTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTKAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37759</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>91323</contig_pos>
        <strand>+</strand>
        <context>ttttttCTTK[A/C]ASWKTWTTGW</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTG</left_flank>
        <right_flank>ACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTGGGTTTGGCGGGAATTTCAAAAAAAAAAAAGAAAAATTGAAAAAATATTTTTTAAAAGTTTTCAGTTCTAAAAGGTTCAAGTTGGCTCAAAATAATCATAAAAATCAAATCAGA</canonical>
            <polymorphic>CTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGMACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTGGGTTTGGCGGGAATTTCAAAAAAAAAAAAGAAAAATTGAAAAAATATTTTTTAAAAGTTTTCAGTTCTAAAAGGTTCAAGTTGGCTCAAAATAATCATAAAAATCAAATCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>254 250 195 84 67 63 39 25 14 9</canonical_bands>
                <polymorphic_bands>338 250 195 67 63 39 25 14 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAATCTTGAGATTAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>ATCCTAGCGATACGATAACTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGMACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37760</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>91325</contig_pos>
        <strand>+</strand>
        <context>ttttCTTKMA[C/G]WKTWTTGWWW</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAA</left_flank>
        <right_flank>TGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTGGGTTTGGCGGGAATTTCAAAAAAAAAAAAGAAAAATTGAAAAAATATTTTTTAAAAGTTTTCAGTTCTAAAAGGTTCAAGTTGGCTCAAAATAATCATAAAAATCAAATCAGAAC</canonical>
            <polymorphic>GAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAASTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTGGGTTTGGCGGGAATTTCAAAAAAAAAAAAGAAAAATTGAAAAAATATTTTTTAAAAGTTTTCAGTTCTAAAAGGTTCAAGTTGGCTCAAAATAATCATAAAAATCAAATCAGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 282 107 34 32 24 20</canonical_bands>
                <polymorphic_bands>533 282 107 34 24 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAATCTTGAGATTAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>ATCCTAGCGATACGATAACTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAASTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37761</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>91326</contig_pos>
        <strand>+</strand>
        <context>tttCTTKMAS[A/T]KTWTTGWWWC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAAC</left_flank>
        <right_flank>GTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTGGGTTTGGCGGGAATTTCAAAAAAAAAAAAGAAAAATTGAAAAAATATTTTTTAAAAGTTTTCAGTTCTAAAAGGTTCAAGTTGGCTCAAAATAATCATAAAAATCAAATCAGAACT</canonical>
            <polymorphic>AATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACWGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTGGGTTTGGCGGGAATTTCAAAAAAAAAAAAGAAAAATTGAAAAAATATTTTTTAAAAGTTTTCAGTTCTAAAAGGTTCAAGTTGGCTCAAAATAATCATAAAAATCAAATCAGAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAATCTTGAGATTAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>ATCCTAGCGATACGATAACTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACWGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37762</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>91327</contig_pos>
        <strand>+</strand>
        <context>ttCTTKMASW[G/T]TWTTGWWWCT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACT</left_flank>
        <right_flank>TATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTGGGTTTGGCGGGAATTTCAAAAAAAAAAAAGAAAAATTGAAAAAATATTTTTTAAAAGTTTTCAGTTCTAAAAGGTTCAAGTTGGCTCAAAATAATCATAAAAATCAAATCAGAACTA</canonical>
            <polymorphic>ATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTKTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTGGGTTTGGCGGGAATTTCAAAAAAAAAAAAGAAAAATTGAAAAAATATTTTTTAAAAGTTTTCAGTTCTAAAAGGTTCAAGTTGGCTCAAAATAATCATAAAAATCAAATCAGAACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>499 284 107 34 32 24 20</canonical_bands>
                <polymorphic_bands>531 284 107 34 24 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAATCTTGAGATTAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>ATCCTAGCGATACGATAACTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTKTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37763</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>91329</contig_pos>
        <strand>+</strand>
        <context>CTTKMASWKT[A/T]TTGWWWCTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGT</left_flank>
        <right_flank>TTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTGGGTTTGGCGGGAATTTCAAAAAAAAAAAAGAAAAATTGAAAAAATATTTTTTAAAAGTTTTCAGTTCTAAAAGGTTCAAGTTGGCTCAAAATAATCATAAAAATCAAATCAGAACTAGA</canonical>
            <polymorphic>TTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTWTTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTGGGTTTGGCGGGAATTTCAAAAAAAAAAAAGAAAAATTGAAAAAATATTTTTTAAAAGTTTTCAGTTCTAAAAGGTTCAAGTTGGCTCAAAATAATCATAAAAATCAAATCAGAACTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAATCTTGAGATTAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>ATCCTAGCGATACGATAACTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTWTTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37764</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>91333</contig_pos>
        <strand>+</strand>
        <context>MASWKTWTTG[A/T]WWCTTTATTG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTG</left_flank>
        <right_flank>TTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTGGGTTTGGCGGGAATTTCAAAAAAAAAAAAGAAAAATTGAAAAAATATTTTTTAAAAGTTTTCAGTTCTAAAAGGTTCAAGTTGGCTCAAAATAATCATAAAAATCAAATCAGAACTAGAAATT</canonical>
            <polymorphic>GAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGWTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTGGGTTTGGCGGGAATTTCAAAAAAAAAAAAGAAAAATTGAAAAAATATTTTTTAAAAGTTTTCAGTTCTAAAAGGTTCAAGTTGGCTCAAAATAATCATAAAAATCAAATCAGAACTAGAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAATCTTGAGATTAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>ATCCTAGCGATACGATAACTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGWTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37765</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>91334</contig_pos>
        <strand>+</strand>
        <context>ASWKTWTTGW[A/T]WCTTTATTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGT</left_flank>
        <right_flank>TCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTGGGTTTGGCGGGAATTTCAAAAAAAAAAAAGAAAAATTGAAAAAATATTTTTTAAAAGTTTTCAGTTCTAAAAGGTTCAAGTTGGCTCAAAATAATCATAAAAATCAAATCAGAACTAGAAATTT</canonical>
            <polymorphic>AATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTWTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTGGGTTTGGCGGGAATTTCAAAAAAAAAAAAGAAAAATTGAAAAAATATTTTTTAAAAGTTTTCAGTTCTAAAAGGTTCAAGTTGGCTCAAAATAATCATAAAAATCAAATCAGAACTAGAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAATCTTGAGATTAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>ATCCTAGCGATACGATAACTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTWTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37766</snp_id>
        <super_contig>c012500711.Contig1</super_contig>
        <contig_pos>91335</contig_pos>
        <strand>+</strand>
        <context>SWKTWTTGWW[A/T]CTTTATTGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTT</left_flank>
        <right_flank>CTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTGGGTTTGGCGGGAATTTCAAAAAAAAAAAAGAAAAATTGAAAAAATATTTTTTAAAAGTTTTCAGTTCTAAAAGGTTCAAGTTGGCTCAAAATAATCATAAAAATCAAATCAGAACTAGAAATTTG</canonical>
            <polymorphic>ATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGAATTTTCAAATTTTCCAATTTTTCGGAATTTTTTTATTTTTTTTTTGAATTTCTGATTTTGAAAAAACTACGAATTTTAAGAATTCAACTCTTTCAAAATATCAAGAATCGAAAATCTAGAAAGTATTTTTCAGATTTCGAATATCGGATTTTCTGAATTTTTCAGAAAAAAAAAGTTTCTAGAAGGTTCTAAATTCTCTCTTTCCAGATTTTCGACTTTATAAAATTTTAAAACTTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTWCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGATACATTATCTACAGTAACCTACGAAAATGTTCCTTTTAGAAATGTTTCGAAATGTATCTACCTTTTTTATTATCTGTAACCTTATCATACTTACCATAATCCTAAAACACAATATCTACAGTACCCCAAAAATGTTTTCCTACAGTAACCCAAGAAGTGAATTCAAGTTTTTTCCAGACGAGCCGTTGCAAGAAAAGGCGACGTTGCAGTGGCGGTGGCGAAGCAGCAGATGCGATCACCAGTCGACGGAATTCGGTTACGGATGCGGATATTACAAGGATTATGGTGAGCATTTTTTTTTTTGAAATTTGGGTTTGGCGGGAATTTCAAAAAAAAAAAAGAAAAATTGAAAAAATATTTTTTAAAAGTTTTCAGTTCTAAAAGGTTCAAGTTGGCTCAAAATAATCATAAAAATCAAATCAGAACTAGAAATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAATCTTGAGATTAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>ATCCTAGCGATACGATAACTACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTTCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAATCTTGAGATTAAGGAGCTTAAAATTGTTGAATATGCGAATTTTCTGAAAGTTTTGGAATTCCAAATTTCTTGAATTTCTTGACTTTTAAAACTTGACTTGAAAAACTTTTAAAAAAAATAATTTCAGATTTTTGAAAAACTTTAAAATTAAATTTTTTTTTCTTGAACTGTATTGTTWCTTTATTGTATTCTTCTGGCACAGTACTCTTTTCATAATTACTGTAGTTATCGTATCGCTAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37767</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>21528</contig_pos>
        <strand>+</strand>
        <context>AAGACTTACA[C/T]CGATTAACTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTACTAAAAGACTTATATCAGAAGACAAACTTATATTATAAGACTTACA</left_flank>
        <right_flank>CGATTAACTTATACCTTTTATATCTCATACCATATACCTTACACCTTATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTCCTGACCACCTGTCATTCACTGATCCCTAATGCATCTCGCCATTCTCACCCACTGCTTCACCCCTTCCTCACCACCCGCATCTCCCCCTGTTTCTTTTTCCATTTTCTCAATTTATGTGATCGGAGAACTTTCGGGGGCCCCGATGGCGCGGGTAAGTCGATGAGAGGAGTGCGGCGAGAGCAGCAATCGCGAGTGAGTTTTGTGCCCATCATCTTCTAGGAAACCTCCATCGGATGCCTGATGTTAGCACCACGGGGGCGGTGCGCCTCTTGTGTAAAGTTGTTGAGATTTGCTCAAACAGCTAGCTCTCCTCTTTCTCTCCATCTCCGAAGCCTCCTCGGGGTGCCGCGACAGTGTAAAAGGGAGACAAGAGCGACGGATATTCTTCAGTCAGTCTCATTCAGCTACTCAACACAGTCCACAAAATGGTGAGTTTCCATGAGTTCTACTAAAAGACTTATATCAGAAGACAAACTTATATTATAAGACTTACATCGATTAACTTATACCTTTTATATCTCATACCATATACCTTACACCTTATATCATAACATGAGTAAGTCTATTCAAAACTCCAATTTCCTATTTATCATCTAAACTAGGATAGTTAGTTGACAAAAAATGTAAAACCCTTTTCTTGCAATTACTAAATTTGATGTTTCAGTCCAAGGCCGCCAAGAAGAAGTCCTCCAAGAAGCGCTCGGGATCCGAGGCCGCTCAATTCGACCAGAAGACCATCCAAGAATTCAAGGAGGCTTTCGGTATCATGGACCAGAACAAGGACGGAGTCATCGACAAGGTTTGTCTTATCTTGAAGAATAGTAGCTTCGAAAATTGGTTTGTTTTCAGTCCGATCTCAAGGATCTCTACGCTTCCATGGGACAAATCGCCCCAGACAGCCAGATCGACGCCATGATCAAGGAGGCTTCCGGACCAATCAACTTCACCGTTTTCCTCACCCTCTTCGGAGAGCGATTGACCGGTAAGAAATAGTG</canonical>
            <polymorphic>CTCTCCTGACCACCTGTCATTCACTGATCCCTAATGCATCTCGCCATTCTCACCCACTGCTTCACCCCTTCCTCACCACCCGCATCTCCCCCTGTTTCTTTTTCCATTTTCTCAATTTATGTGATCGGAGAACTTTCGGGGGCCCCGATGGCGCGGGTAAGTCGATGAGAGGAGTGCGGCGAGAGCAGCAATCGCGAGTGAGTTTTGTGCCCATCATCTTCTAGGAAACCTCCATCGGATGCCTGATGTTAGCACCACGGGGGCGGTGCGCCTCTTGTGTAAAGTTGTTGAGATTTGCTCAAACAGCTAGCTCTCCTCTTTCTCTCCATCTCCGAAGCCTCCTCGGGGTGCCGCGACAGTGTAAAAGGGAGACAAGAGCGACGGATATTCTTCAGTCAGTCTCATTCAGCTACTCAACACAGTCCACAAAATGGTGAGTTTCCATGAGTTCTACTAAAAGACTTATATCAGAAGACAAACTTATATTATAAGACTTACAYCGATTAACTTATACCTTTTATATCTCATACCATATACCTTACACCTTATATCATAACATGAGTAAGTCTATTCAAAACTCCAATTTCCTATTTATCATCTAAACTAGGATAGTTAGTTGACAAAAAATGTAAAACCCTTTTCTTGCAATTACTAAATTTGATGTTTCAGTCCAAGGCCGCCAAGAAGAAGTCCTCCAAGAAGCGCTCGGGATCCGAGGCCGCTCAATTCGACCAGAAGACCATCCAAGAATTCAAGGAGGCTTTCGGTATCATGGACCAGAACAAGGACGGAGTCATCGACAAGGTTTGTCTTATCTTGAAGAATAGTAGCTTCGAAAATTGGTTTGTTTTCAGTCCGATCTCAAGGATCTCTACGCTTCCATGGGACAAATCGCCCCAGACAGCCAGATCGACGCCATGATCAAGGAGGCTTCCGGACCAATCAACTTCACCGTTTTCCTCACCCTCTTCGGAGAGCGATTGACCGGTAAGAAATAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>338 228 163 89 77 69 36</canonical_bands>
                <polymorphic_bands>566 163 89 77 69 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTCTCATTCAGCTACTCAACAC</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAAAGGGTTTTACATTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGTCTCATTCAGCTACTCAACACAGTCCACAAAATGGTGAGTTTCCATGAGTTCTACTAAAAGACTTATATCAGAAGACAAACTTATATTATAAGACTTACATCGATTAACTTATACCTTTTATATCTCATACCATATACCTTACACCTTATATCATAACATGAGTAAGTCTATTCAAAACTCCAATTTCCTATTTATCATCTAAACTAGGATAGTTAGTTGACAAAAAATGTAAAACCCTTTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>AGTCTCATTCAGCTACTCAACACAGTCCACAAAATGGTGAGTTTCCATGAGTTCTACTAAAAGACTTATATCAGAAGACAAACTTATATTATAAGACTTACAYCGATTAACTTATACCTTTTATATCTCATACCATATACCTTACACCTTATATCATAACATGAGTAAGTCTATTCAAAACTCCAATTTCCTATTTATCATCTAAACTAGGATAGTTAGTTGACAAAAAATGTAAAACCCTTTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37768</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>21558</contig_pos>
        <strand>+</strand>
        <context>ATATCTCATA[A/C]CATATACCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTATATTATAAGACTTACATCGATTAACTTATACCTTTTATATCTCATA</left_flank>
        <right_flank>CATATACCTTACACCTTATATCATAACATGAGTAAGTCTATTCAAAACTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAATGCATCTCGCCATTCTCACCCACTGCTTCACCCCTTCCTCACCACCCGCATCTCCCCCTGTTTCTTTTTCCATTTTCTCAATTTATGTGATCGGAGAACTTTCGGGGGCCCCGATGGCGCGGGTAAGTCGATGAGAGGAGTGCGGCGAGAGCAGCAATCGCGAGTGAGTTTTGTGCCCATCATCTTCTAGGAAACCTCCATCGGATGCCTGATGTTAGCACCACGGGGGCGGTGCGCCTCTTGTGTAAAGTTGTTGAGATTTGCTCAAACAGCTAGCTCTCCTCTTTCTCTCCATCTCCGAAGCCTCCTCGGGGTGCCGCGACAGTGTAAAAGGGAGACAAGAGCGACGGATATTCTTCAGTCAGTCTCATTCAGCTACTCAACACAGTCCACAAAATGGTGAGTTTCCATGAGTTCTACTAAAAGACTTATATCAGAAGACAAACTTATATTATAAGACTTACATCGATTAACTTATACCTTTTATATCTCATACCATATACCTTACACCTTATATCATAACATGAGTAAGTCTATTCAAAACTCCAATTTCCTATTTATCATCTAAACTAGGATAGTTAGTTGACAAAAAATGTAAAACCCTTTTCTTGCAATTACTAAATTTGATGTTTCAGTCCAAGGCCGCCAAGAAGAAGTCCTCCAAGAAGCGCTCGGGATCCGAGGCCGCTCAATTCGACCAGAAGACCATCCAAGAATTCAAGGAGGCTTTCGGTATCATGGACCAGAACAAGGACGGAGTCATCGACAAGGTTTGTCTTATCTTGAAGAATAGTAGCTTCGAAAATTGGTTTGTTTTCAGTCCGATCTCAAGGATCTCTACGCTTCCATGGGACAAATCGCCCCAGACAGCCAGATCGACGCCATGATCAAGGAGGCTTCCGGACCAATCAACTTCACCGTTTTCCTCACCCTCTTCGGAGAGCGATTGACCGGTAAGAAATAGTGCAACTAGGGATAATCTAGATGATTTTGTGA</canonical>
            <polymorphic>CTAATGCATCTCGCCATTCTCACCCACTGCTTCACCCCTTCCTCACCACCCGCATCTCCCCCTGTTTCTTTTTCCATTTTCTCAATTTATGTGATCGGAGAACTTTCGGGGGCCCCGATGGCGCGGGTAAGTCGATGAGAGGAGTGCGGCGAGAGCAGCAATCGCGAGTGAGTTTTGTGCCCATCATCTTCTAGGAAACCTCCATCGGATGCCTGATGTTAGCACCACGGGGGCGGTGCGCCTCTTGTGTAAAGTTGTTGAGATTTGCTCAAACAGCTAGCTCTCCTCTTTCTCTCCATCTCCGAAGCCTCCTCGGGGTGCCGCGACAGTGTAAAAGGGAGACAAGAGCGACGGATATTCTTCAGTCAGTCTCATTCAGCTACTCAACACAGTCCACAAAATGGTGAGTTTCCATGAGTTCTACTAAAAGACTTATATCAGAAGACAAACTTATATTATAAGACTTACATCGATTAACTTATACCTTTTATATCTCATAMCATATACCTTACACCTTATATCATAACATGAGTAAGTCTATTCAAAACTCCAATTTCCTATTTATCATCTAAACTAGGATAGTTAGTTGACAAAAAATGTAAAACCCTTTTCTTGCAATTACTAAATTTGATGTTTCAGTCCAAGGCCGCCAAGAAGAAGTCCTCCAAGAAGCGCTCGGGATCCGAGGCCGCTCAATTCGACCAGAAGACCATCCAAGAATTCAAGGAGGCTTTCGGTATCATGGACCAGAACAAGGACGGAGTCATCGACAAGGTTTGTCTTATCTTGAAGAATAGTAGCTTCGAAAATTGGTTTGTTTTCAGTCCGATCTCAAGGATCTCTACGCTTCCATGGGACAAATCGCCCCAGACAGCCAGATCGACGCCATGATCAAGGAGGCTTCCGGACCAATCAACTTCACCGTTTTCCTCACCCTCTTCGGAGAGCGATTGACCGGTAAGAAATAGTGCAACTAGGGATAATCTAGATGATTTTGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCTCATTCAGCTACTCAACAC</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAAAGGGTTTTACATTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGTCTCATTCAGCTACTCAACACAGTCCACAAAATGGTGAGTTTCCATGAGTTCTACTAAAAGACTTATATCAGAAGACAAACTTATATTATAAGACTTACATCGATTAACTTATACCTTTTATATCTCATACCATATACCTTACACCTTATATCATAACATGAGTAAGTCTATTCAAAACTCCAATTTCCTATTTATCATCTAAACTAGGATAGTTAGTTGACAAAAAATGTAAAACCCTTTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>AGTCTCATTCAGCTACTCAACACAGTCCACAAAATGGTGAGTTTCCATGAGTTCTACTAAAAGACTTATATCAGAAGACAAACTTATATTATAAGACTTACATCGATTAACTTATACCTTTTATATCTCATAMCATATACCTTACACCTTATATCATAACATGAGTAAGTCTATTCAAAACTCCAATTTCCTATTTATCATCTAAACTAGGATAGTTAGTTGACAAAAAATGTAAAACCCTTTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37769</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>25428</contig_pos>
        <strand></strand>
        <context>TTATAATATT[T/C]gtcaaaataa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATT</left_flank>
        <right_flank>GTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGTTCCAAAGTATGATCTGAAAAAATGCTATATTCAGTTTTCAGTCTTTGTTTCATGGTTCCCAACCCCGAAAACGCAAAAGTAGCCAATTTCGTTTGCTCCAGCGGTGGTGCCCATCTACTCCAGATAACATGCATCGCTGGATATGTGACTCCTTCCAGTAATCCCTCCATGAAACGAGCAAACACCAGCATTCCCCAACCCATTCTGGCGAATGGAGGAGTGAGAAGCGTGAAGACAGCGGTTCCTATAAATAAATAAGAGATATGGGAGATGGGTAGGAGAGCCCTACCAAATGTACCAGCGAAAAAGACGGTCTTTGCTCCATGTGTGTAGGCGAGATATCCTCCGGGTAGTTGGGACACAATGTAACCATAGAAGAAGGAGCTGAGAACGACTCCTTGGGTCATTGGAGTCCAGTTTTCAAAGTCACCATGAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGAAACGAGGTTT</canonical>
            <polymorphic>ACAGTTCCAAAGTATGATCTGAAAAAATGCTATATTCAGTTTTCAGTCTTTGTTTCATGGTTCCCAACCCCGAAAACGCAAAAGTAGCCAATTTCGTTTGCTCCAGCGGTGGTGCCCATCTACTCCAGATAACATGCATCGCTGGATATGTGACTCCTTCCAGTAATCCCTCCATGAAACGAGCAAACACCAGCATTCCCCAACCCATTCTGGCGAATGGAGGAGTGAGAAGCGTGAAGACAGCGGTTCCTATAAATAAATAAGAGATATGGGAGATGGGTAGGAGAGCCCTACCAAATGTACCAGCGAAAAAGACGGTCTTTGCTCCATGTGTGTAGGCGAGATATCCTCCGGGTAGTTGGGACACAATGTAACCATAGAAGAAGGAGCTGAGAACGACTCCTTGGGTCATTGGAGTCCAGTTTTCAAAGTCACCATGAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTYGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGAAACGAGGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACCTGAAATTGAGATTATCCT</pcr_primer_p1>
		<pcr_primer_p2>TCATCCAAACTGTTCTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>552</pcr_amplicon_size>
		<canonical_amplicon>GAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGA</canonical_amplicon>
		<polymorphic_amplicon>GAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTYGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37770</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>25511</contig_pos>
        <strand></strand>
        <context>gctcaagttt[A/C]tgtcaagtkk</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTT</left_flank>
        <right_flank>TGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACAT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAGCCAATTTCGTTTGCTCCAGCGGTGGTGCCCATCTACTCCAGATAACATGCATCGCTGGATATGTGACTCCTTCCAGTAATCCCTCCATGAAACGAGCAAACACCAGCATTCCCCAACCCATTCTGGCGAATGGAGGAGTGAGAAGCGTGAAGACAGCGGTTCCTATAAATAAATAAGAGATATGGGAGATGGGTAGGAGAGCCCTACCAAATGTACCAGCGAAAAAGACGGTCTTTGCTCCATGTGTGTAGGCGAGATATCCTCCGGGTAGTTGGGACACAATGTAACCATAGAAGAAGGAGCTGAGAACGACTCCTTGGGTCATTGGAGTCCAGTTTTCAAAGTCACCATGAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGAAACGAGGTTTTCTAGTCATTATTGAATTTTAAAAGAATATTATTTTTTCAATTCACTTCGCAAGATGATATTTTTCAATCAAAATGATACTAG</canonical>
            <polymorphic>GTAGCCAATTTCGTTTGCTCCAGCGGTGGTGCCCATCTACTCCAGATAACATGCATCGCTGGATATGTGACTCCTTCCAGTAATCCCTCCATGAAACGAGCAAACACCAGCATTCCCCAACCCATTCTGGCGAATGGAGGAGTGAGAAGCGTGAAGACAGCGGTTCCTATAAATAAATAAGAGATATGGGAGATGGGTAGGAGAGCCCTACCAAATGTACCAGCGAAAAAGACGGTCTTTGCTCCATGTGTGTAGGCGAGATATCCTCCGGGTAGTTGGGACACAATGTAACCATAGAAGAAGGAGCTGAGAACGACTCCTTGGGTCATTGGAGTCCAGTTTTCAAAGTCACCATGAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTMTGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGAAACGAGGTTTTCTAGTCATTATTGAATTTTAAAAGAATATTATTTTTTCAATTCACTTCGCAAGATGATATTTTTCAATCAAAATGATACTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACCTGAAATTGAGATTATCCT</pcr_primer_p1>
		<pcr_primer_p2>TCATCCAAACTGTTCTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>552</pcr_amplicon_size>
		<canonical_amplicon>GAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGA</canonical_amplicon>
		<polymorphic_amplicon>GAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTMTGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37771</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>25520</contig_pos>
        <strand></strand>
        <context>tmtgtcaagt[T/G]kcsgatcact</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGT</left_flank>
        <right_flank>GCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGTTTGCTCCAGCGGTGGTGCCCATCTACTCCAGATAACATGCATCGCTGGATATGTGACTCCTTCCAGTAATCCCTCCATGAAACGAGCAAACACCAGCATTCCCCAACCCATTCTGGCGAATGGAGGAGTGAGAAGCGTGAAGACAGCGGTTCCTATAAATAAATAAGAGATATGGGAGATGGGTAGGAGAGCCCTACCAAATGTACCAGCGAAAAAGACGGTCTTTGCTCCATGTGTGTAGGCGAGATATCCTCCGGGTAGTTGGGACACAATGTAACCATAGAAGAAGGAGCTGAGAACGACTCCTTGGGTCATTGGAGTCCAGTTTTCAAAGTCACCATGAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGAAACGAGGTTTTCTAGTCATTATTGAATTTTAAAAGAATATTATTTTTTCAATTCACTTCGCAAGATGATATTTTTCAATCAAAATGATACTAGAAATTGCTC</canonical>
            <polymorphic>TTCGTTTGCTCCAGCGGTGGTGCCCATCTACTCCAGATAACATGCATCGCTGGATATGTGACTCCTTCCAGTAATCCCTCCATGAAACGAGCAAACACCAGCATTCCCCAACCCATTCTGGCGAATGGAGGAGTGAGAAGCGTGAAGACAGCGGTTCCTATAAATAAATAAGAGATATGGGAGATGGGTAGGAGAGCCCTACCAAATGTACCAGCGAAAAAGACGGTCTTTGCTCCATGTGTGTAGGCGAGATATCCTCCGGGTAGTTGGGACACAATGTAACCATAGAAGAAGGAGCTGAGAACGACTCCTTGGGTCATTGGAGTCCAGTTTTCAAAGTCACCATGAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTKGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGAAACGAGGTTTTCTAGTCATTATTGAATTTTAAAAGAATATTATTTTTTCAATTCACTTCGCAAGATGATATTTTTCAATCAAAATGATACTAGAAATTGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACCTGAAATTGAGATTATCCT</pcr_primer_p1>
		<pcr_primer_p2>TCATCCAAACTGTTCTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>552</pcr_amplicon_size>
		<canonical_amplicon>GAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGA</canonical_amplicon>
		<polymorphic_amplicon>GAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTKGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37772</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>25521</contig_pos>
        <strand></strand>
        <context>mtgtcaagtk[G/T]csgatcactt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTT</left_flank>
        <right_flank>CCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTTTGCTCCAGCGGTGGTGCCCATCTACTCCAGATAACATGCATCGCTGGATATGTGACTCCTTCCAGTAATCCCTCCATGAAACGAGCAAACACCAGCATTCCCCAACCCATTCTGGCGAATGGAGGAGTGAGAAGCGTGAAGACAGCGGTTCCTATAAATAAATAAGAGATATGGGAGATGGGTAGGAGAGCCCTACCAAATGTACCAGCGAAAAAGACGGTCTTTGCTCCATGTGTGTAGGCGAGATATCCTCCGGGTAGTTGGGACACAATGTAACCATAGAAGAAGGAGCTGAGAACGACTCCTTGGGTCATTGGAGTCCAGTTTTCAAAGTCACCATGAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGAAACGAGGTTTTCTAGTCATTATTGAATTTTAAAAGAATATTATTTTTTCAATTCACTTCGCAAGATGATATTTTTCAATCAAAATGATACTAGAAATTGCTCT</canonical>
            <polymorphic>TCGTTTGCTCCAGCGGTGGTGCCCATCTACTCCAGATAACATGCATCGCTGGATATGTGACTCCTTCCAGTAATCCCTCCATGAAACGAGCAAACACCAGCATTCCCCAACCCATTCTGGCGAATGGAGGAGTGAGAAGCGTGAAGACAGCGGTTCCTATAAATAAATAAGAGATATGGGAGATGGGTAGGAGAGCCCTACCAAATGTACCAGCGAAAAAGACGGTCTTTGCTCCATGTGTGTAGGCGAGATATCCTCCGGGTAGTTGGGACACAATGTAACCATAGAAGAAGGAGCTGAGAACGACTCCTTGGGTCATTGGAGTCCAGTTTTCAAAGTCACCATGAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTKCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGAAACGAGGTTTTCTAGTCATTATTGAATTTTAAAAGAATATTATTTTTTCAATTCACTTCGCAAGATGATATTTTTCAATCAAAATGATACTAGAAATTGCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACCTGAAATTGAGATTATCCT</pcr_primer_p1>
		<pcr_primer_p2>TCATCCAAACTGTTCTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>552</pcr_amplicon_size>
		<canonical_amplicon>GAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGA</canonical_amplicon>
		<polymorphic_amplicon>GAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTKCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37773</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>25523</contig_pos>
        <strand></strand>
        <context>gtcaagtkkc[C/G]gatcacttkg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGC</left_flank>
        <right_flank>GATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTGCTCCAGCGGTGGTGCCCATCTACTCCAGATAACATGCATCGCTGGATATGTGACTCCTTCCAGTAATCCCTCCATGAAACGAGCAAACACCAGCATTCCCCAACCCATTCTGGCGAATGGAGGAGTGAGAAGCGTGAAGACAGCGGTTCCTATAAATAAATAAGAGATATGGGAGATGGGTAGGAGAGCCCTACCAAATGTACCAGCGAAAAAGACGGTCTTTGCTCCATGTGTGTAGGCGAGATATCCTCCGGGTAGTTGGGACACAATGTAACCATAGAAGAAGGAGCTGAGAACGACTCCTTGGGTCATTGGAGTCCAGTTTTCAAAGTCACCATGAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGAAACGAGGTTTTCTAGTCATTATTGAATTTTAAAAGAATATTATTTTTTCAATTCACTTCGCAAGATGATATTTTTCAATCAAAATGATACTAGAAATTGCTCTGG</canonical>
            <polymorphic>GTTTGCTCCAGCGGTGGTGCCCATCTACTCCAGATAACATGCATCGCTGGATATGTGACTCCTTCCAGTAATCCCTCCATGAAACGAGCAAACACCAGCATTCCCCAACCCATTCTGGCGAATGGAGGAGTGAGAAGCGTGAAGACAGCGGTTCCTATAAATAAATAAGAGATATGGGAGATGGGTAGGAGAGCCCTACCAAATGTACCAGCGAAAAAGACGGTCTTTGCTCCATGTGTGTAGGCGAGATATCCTCCGGGTAGTTGGGACACAATGTAACCATAGAAGAAGGAGCTGAGAACGACTCCTTGGGTCATTGGAGTCCAGTTTTCAAAGTCACCATGAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCSGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGAAACGAGGTTTTCTAGTCATTATTGAATTTTAAAAGAATATTATTTTTTCAATTCACTTCGCAAGATGATATTTTTCAATCAAAATGATACTAGAAATTGCTCTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACCTGAAATTGAGATTATCCT</pcr_primer_p1>
		<pcr_primer_p2>TCATCCAAACTGTTCTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>552</pcr_amplicon_size>
		<canonical_amplicon>GAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGA</canonical_amplicon>
		<polymorphic_amplicon>GAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCSGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37774</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>25532</contig_pos>
        <strand></strand>
        <context>csgatcactt[G/T]gaaattttgg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTT</left_flank>
        <right_flank>GAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCGGTGGTGCCCATCTACTCCAGATAACATGCATCGCTGGATATGTGACTCCTTCCAGTAATCCCTCCATGAAACGAGCAAACACCAGCATTCCCCAACCCATTCTGGCGAATGGAGGAGTGAGAAGCGTGAAGACAGCGGTTCCTATAAATAAATAAGAGATATGGGAGATGGGTAGGAGAGCCCTACCAAATGTACCAGCGAAAAAGACGGTCTTTGCTCCATGTGTGTAGGCGAGATATCCTCCGGGTAGTTGGGACACAATGTAACCATAGAAGAAGGAGCTGAGAACGACTCCTTGGGTCATTGGAGTCCAGTTTTCAAAGTCACCATGAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGAAACGAGGTTTTCTAGTCATTATTGAATTTTAAAAGAATATTATTTTTTCAATTCACTTCGCAAGATGATATTTTTCAATCAAAATGATACTAGAAATTGCTCTGGTATCAAACT</canonical>
            <polymorphic>AGCGGTGGTGCCCATCTACTCCAGATAACATGCATCGCTGGATATGTGACTCCTTCCAGTAATCCCTCCATGAAACGAGCAAACACCAGCATTCCCCAACCCATTCTGGCGAATGGAGGAGTGAGAAGCGTGAAGACAGCGGTTCCTATAAATAAATAAGAGATATGGGAGATGGGTAGGAGAGCCCTACCAAATGTACCAGCGAAAAAGACGGTCTTTGCTCCATGTGTGTAGGCGAGATATCCTCCGGGTAGTTGGGACACAATGTAACCATAGAAGAAGGAGCTGAGAACGACTCCTTGGGTCATTGGAGTCCAGTTTTCAAAGTCACCATGAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTKGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGAAACGAGGTTTTCTAGTCATTATTGAATTTTAAAAGAATATTATTTTTTCAATTCACTTCGCAAGATGATATTTTTCAATCAAAATGATACTAGAAATTGCTCTGGTATCAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACCTGAAATTGAGATTATCCT</pcr_primer_p1>
		<pcr_primer_p2>TCATCCAAACTGTTCTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>552</pcr_amplicon_size>
		<canonical_amplicon>GAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGA</canonical_amplicon>
		<polymorphic_amplicon>GAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTKGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37775</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>25563</contig_pos>
        <strand></strand>
        <context>cacagacata[A/G]attgaaaacg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATA</left_flank>
        <right_flank>ATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCATCGCTGGATATGTGACTCCTTCCAGTAATCCCTCCATGAAACGAGCAAACACCAGCATTCCCCAACCCATTCTGGCGAATGGAGGAGTGAGAAGCGTGAAGACAGCGGTTCCTATAAATAAATAAGAGATATGGGAGATGGGTAGGAGAGCCCTACCAAATGTACCAGCGAAAAAGACGGTCTTTGCTCCATGTGTGTAGGCGAGATATCCTCCGGGTAGTTGGGACACAATGTAACCATAGAAGAAGGAGCTGAGAACGACTCCTTGGGTCATTGGAGTCCAGTTTTCAAAGTCACCATGAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGAAACGAGGTTTTCTAGTCATTATTGAATTTTAAAAGAATATTATTTTTTCAATTCACTTCGCAAGATGATATTTTTCAATCAAAATGATACTAGAAATTGCTCTGGTATCAAACTACTGGCTGAAATATTTCTCAAACTAAATTAT</canonical>
            <polymorphic>GCATCGCTGGATATGTGACTCCTTCCAGTAATCCCTCCATGAAACGAGCAAACACCAGCATTCCCCAACCCATTCTGGCGAATGGAGGAGTGAGAAGCGTGAAGACAGCGGTTCCTATAAATAAATAAGAGATATGGGAGATGGGTAGGAGAGCCCTACCAAATGTACCAGCGAAAAAGACGGTCTTTGCTCCATGTGTGTAGGCGAGATATCCTCCGGGTAGTTGGGACACAATGTAACCATAGAAGAAGGAGCTGAGAACGACTCCTTGGGTCATTGGAGTCCAGTTTTCAAAGTCACCATGAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATARATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGAAACGAGGTTTTCTAGTCATTATTGAATTTTAAAAGAATATTATTTTTTCAATTCACTTCGCAAGATGATATTTTTCAATCAAAATGATACTAGAAATTGCTCTGGTATCAAACTACTGGCTGAAATATTTCTCAAACTAAATTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>311 171 137 106 45 45 40 28 25 23 23 18 11 11 6</canonical_bands>
                <polymorphic_bands>311 171 137 106 51 45 45 40 25 23 18 11 11 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACCTGAAATTGAGATTATCCT</pcr_primer_p1>
		<pcr_primer_p2>TCATCCAAACTGTTCTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>552</pcr_amplicon_size>
		<canonical_amplicon>GAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGA</canonical_amplicon>
		<polymorphic_amplicon>GAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATARATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37776</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>25579</contig_pos>
        <strand></strand>
        <context>aaacgttgct[T/C]tcttggaayt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCT</left_flank>
        <right_flank>TCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTCCTTCCAGTAATCCCTCCATGAAACGAGCAAACACCAGCATTCCCCAACCCATTCTGGCGAATGGAGGAGTGAGAAGCGTGAAGACAGCGGTTCCTATAAATAAATAAGAGATATGGGAGATGGGTAGGAGAGCCCTACCAAATGTACCAGCGAAAAAGACGGTCTTTGCTCCATGTGTGTAGGCGAGATATCCTCCGGGTAGTTGGGACACAATGTAACCATAGAAGAAGGAGCTGAGAACGACTCCTTGGGTCATTGGAGTCCAGTTTTCAAAGTCACCATGAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGAAACGAGGTTTTCTAGTCATTATTGAATTTTAAAAGAATATTATTTTTTCAATTCACTTCGCAAGATGATATTTTTCAATCAAAATGATACTAGAAATTGCTCTGGTATCAAACTACTGGCTGAAATATTTCTCAAACTAAATTATGGAGCCCCCAATTTAA</canonical>
            <polymorphic>GACTCCTTCCAGTAATCCCTCCATGAAACGAGCAAACACCAGCATTCCCCAACCCATTCTGGCGAATGGAGGAGTGAGAAGCGTGAAGACAGCGGTTCCTATAAATAAATAAGAGATATGGGAGATGGGTAGGAGAGCCCTACCAAATGTACCAGCGAAAAAGACGGTCTTTGCTCCATGTGTGTAGGCGAGATATCCTCCGGGTAGTTGGGACACAATGTAACCATAGAAGAAGGAGCTGAGAACGACTCCTTGGGTCATTGGAGTCCAGTTTTCAAAGTCACCATGAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTYTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGAAACGAGGTTTTCTAGTCATTATTGAATTTTAAAAGAATATTATTTTTTCAATTCACTTCGCAAGATGATATTTTTCAATCAAAATGATACTAGAAATTGCTCTGGTATCAAACTACTGGCTGAAATATTTCTCAAACTAAATTATGGAGCCCCCAATTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACCTGAAATTGAGATTATCCT</pcr_primer_p1>
		<pcr_primer_p2>TCATCCAAACTGTTCTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>552</pcr_amplicon_size>
		<canonical_amplicon>GAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGA</canonical_amplicon>
		<polymorphic_amplicon>GAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTYTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37777</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>25588</contig_pos>
        <strand></strand>
        <context>tytcttggaa[T/C]ttttygaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAA</left_flank>
        <right_flank>TTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACAC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTAATCCCTCCATGAAACGAGCAAACACCAGCATTCCCCAACCCATTCTGGCGAATGGAGGAGTGAGAAGCGTGAAGACAGCGGTTCCTATAAATAAATAAGAGATATGGGAGATGGGTAGGAGAGCCCTACCAAATGTACCAGCGAAAAAGACGGTCTTTGCTCCATGTGTGTAGGCGAGATATCCTCCGGGTAGTTGGGACACAATGTAACCATAGAAGAAGGAGCTGAGAACGACTCCTTGGGTCATTGGAGTCCAGTTTTCAAAGTCACCATGAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGAAACGAGGTTTTCTAGTCATTATTGAATTTTAAAAGAATATTATTTTTTCAATTCACTTCGCAAGATGATATTTTTCAATCAAAATGATACTAGAAATTGCTCTGGTATCAAACTACTGGCTGAAATATTTCTCAAACTAAATTATGGAGCCCCCAATTTAAATAAAACGC</canonical>
            <polymorphic>CAGTAATCCCTCCATGAAACGAGCAAACACCAGCATTCCCCAACCCATTCTGGCGAATGGAGGAGTGAGAAGCGTGAAGACAGCGGTTCCTATAAATAAATAAGAGATATGGGAGATGGGTAGGAGAGCCCTACCAAATGTACCAGCGAAAAAGACGGTCTTTGCTCCATGTGTGTAGGCGAGATATCCTCCGGGTAGTTGGGACACAATGTAACCATAGAAGAAGGAGCTGAGAACGACTCCTTGGGTCATTGGAGTCCAGTTTTCAAAGTCACCATGAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAAYTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGAAACGAGGTTTTCTAGTCATTATTGAATTTTAAAAGAATATTATTTTTTCAATTCACTTCGCAAGATGATATTTTTCAATCAAAATGATACTAGAAATTGCTCTGGTATCAAACTACTGGCTGAAATATTTCTCAAACTAAATTATGGAGCCCCCAATTTAAATAAAACGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>446 171 146 106 51 40 18 11 11</canonical_bands>
                <polymorphic_bands>446 171 146 106 62 40 18 11</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>286 171 137 106 45 45 40 28 25 23 23 18 16 15 11 11</canonical_bands>
                <polymorphic_bands>286 171 137 106 45 45 40 34 28 25 23 18 16 15 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACCTGAAATTGAGATTATCCT</pcr_primer_p1>
		<pcr_primer_p2>TCATCCAAACTGTTCTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>552</pcr_amplicon_size>
		<canonical_amplicon>GAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGA</canonical_amplicon>
		<polymorphic_amplicon>GAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAAYTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37778</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>25593</contig_pos>
        <strand></strand>
        <context>tggaaytttt[T/C]gaaaattcct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTT</left_flank>
        <right_flank>GAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCCTCCATGAAACGAGCAAACACCAGCATTCCCCAACCCATTCTGGCGAATGGAGGAGTGAGAAGCGTGAAGACAGCGGTTCCTATAAATAAATAAGAGATATGGGAGATGGGTAGGAGAGCCCTACCAAATGTACCAGCGAAAAAGACGGTCTTTGCTCCATGTGTGTAGGCGAGATATCCTCCGGGTAGTTGGGACACAATGTAACCATAGAAGAAGGAGCTGAGAACGACTCCTTGGGTCATTGGAGTCCAGTTTTCAAAGTCACCATGAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGAAACGAGGTTTTCTAGTCATTATTGAATTTTAAAAGAATATTATTTTTTCAATTCACTTCGCAAGATGATATTTTTCAATCAAAATGATACTAGAAATTGCTCTGGTATCAAACTACTGGCTGAAATATTTCTCAAACTAAATTATGGAGCCCCCAATTTAAATAAAACGCGAGAA</canonical>
            <polymorphic>ATCCCTCCATGAAACGAGCAAACACCAGCATTCCCCAACCCATTCTGGCGAATGGAGGAGTGAGAAGCGTGAAGACAGCGGTTCCTATAAATAAATAAGAGATATGGGAGATGGGTAGGAGAGCCCTACCAAATGTACCAGCGAAAAAGACGGTCTTTGCTCCATGTGTGTAGGCGAGATATCCTCCGGGTAGTTGGGACACAATGTAACCATAGAAGAAGGAGCTGAGAACGACTCCTTGGGTCATTGGAGTCCAGTTTTCAAAGTCACCATGAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTYGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGAAACGAGGTTTTCTAGTCATTATTGAATTTTAAAAGAATATTATTTTTTCAATTCACTTCGCAAGATGATATTTTTCAATCAAAATGATACTAGAAATTGCTCTGGTATCAAACTACTGGCTGAAATATTTCTCAAACTAAATTATGGAGCCCCCAATTTAAATAAAACGCGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACCTGAAATTGAGATTATCCT</pcr_primer_p1>
		<pcr_primer_p2>TCATCCAAACTGTTCTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>552</pcr_amplicon_size>
		<canonical_amplicon>GAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGA</canonical_amplicon>
		<polymorphic_amplicon>GAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTYGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37779</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>25675</contig_pos>
        <strand></strand>
        <context>aacgtgaaaa[A/G]cagggtgttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAA</left_flank>
        <right_flank>CAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTATAAATAAATAAGAGATATGGGAGATGGGTAGGAGAGCCCTACCAAATGTACCAGCGAAAAAGACGGTCTTTGCTCCATGTGTGTAGGCGAGATATCCTCCGGGTAGTTGGGACACAATGTAACCATAGAAGAAGGAGCTGAGAACGACTCCTTGGGTCATTGGAGTCCAGTTTTCAAAGTCACCATGAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGAAACGAGGTTTTCTAGTCATTATTGAATTTTAAAAGAATATTATTTTTTCAATTCACTTCGCAAGATGATATTTTTCAATCAAAATGATACTAGAAATTGCTCTGGTATCAAACTACTGGCTGAAATATTTCTCAAACTAAATTATGGAGCCCCCAATTTAAATAAAACGCGAGAATGTTTCGAAATGTGGGCCCCAAAGCCTTTGTTTTTGACAAAACCCATTATTCCAATCTCCTTTGAAGTTTTTCTGACTTCTG</canonical>
            <polymorphic>TCCTATAAATAAATAAGAGATATGGGAGATGGGTAGGAGAGCCCTACCAAATGTACCAGCGAAAAAGACGGTCTTTGCTCCATGTGTGTAGGCGAGATATCCTCCGGGTAGTTGGGACACAATGTAACCATAGAAGAAGGAGCTGAGAACGACTCCTTGGGTCATTGGAGTCCAGTTTTCAAAGTCACCATGAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAARCAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGAAACGAGGTTTTCTAGTCATTATTGAATTTTAAAAGAATATTATTTTTTCAATTCACTTCGCAAGATGATATTTTTCAATCAAAATGATACTAGAAATTGCTCTGGTATCAAACTACTGGCTGAAATATTTCTCAAACTAAATTATGGAGCCCCCAATTTAAATAAAACGCGAGAATGTTTCGAAATGTGGGCCCCAAAGCCTTTGTTTTTGACAAAACCCATTATTCCAATCTCCTTTGAAGTTTTTCTGACTTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACCTGAAATTGAGATTATCCT</pcr_primer_p1>
		<pcr_primer_p2>TCATCCAAACTGTTCTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>552</pcr_amplicon_size>
		<canonical_amplicon>GAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGA</canonical_amplicon>
		<polymorphic_amplicon>GAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAARCAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37780</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>25710</contig_pos>
        <strand></strand>
        <context>gaaaacatct[A/G]gaaaactaga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCT</left_flank>
        <right_flank>GAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAGAGCCCTACCAAATGTACCAGCGAAAAAGACGGTCTTTGCTCCATGTGTGTAGGCGAGATATCCTCCGGGTAGTTGGGACACAATGTAACCATAGAAGAAGGAGCTGAGAACGACTCCTTGGGTCATTGGAGTCCAGTTTTCAAAGTCACCATGAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGAAACGAGGTTTTCTAGTCATTATTGAATTTTAAAAGAATATTATTTTTTCAATTCACTTCGCAAGATGATATTTTTCAATCAAAATGATACTAGAAATTGCTCTGGTATCAAACTACTGGCTGAAATATTTCTCAAACTAAATTATGGAGCCCCCAATTTAAATAAAACGCGAGAATGTTTCGAAATGTGGGCCCCAAAGCCTTTGTTTTTGACAAAACCCATTATTCCAATCTCCTTTGAAGTTTTTCTGACTTCTGACTTTTTTCATTTTGTTTTCAACCCAATCCCTAAT</canonical>
            <polymorphic>GGAGAGCCCTACCAAATGTACCAGCGAAAAAGACGGTCTTTGCTCCATGTGTGTAGGCGAGATATCCTCCGGGTAGTTGGGACACAATGTAACCATAGAAGAAGGAGCTGAGAACGACTCCTTGGGTCATTGGAGTCCAGTTTTCAAAGTCACCATGAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTRGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGAAACGAGGTTTTCTAGTCATTATTGAATTTTAAAAGAATATTATTTTTTCAATTCACTTCGCAAGATGATATTTTTCAATCAAAATGATACTAGAAATTGCTCTGGTATCAAACTACTGGCTGAAATATTTCTCAAACTAAATTATGGAGCCCCCAATTTAAATAAAACGCGAGAATGTTTCGAAATGTGGGCCCCAAAGCCTTTGTTTTTGACAAAACCCATTATTCCAATCTCCTTTGAAGTTTTTCTGACTTCTGACTTTTTTCATTTTGTTTTCAACCCAATCCCTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>392 214 202 106 78 8</canonical_bands>
                <polymorphic_bands>392 214 202 114 78</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACCTGAAATTGAGATTATCCT</pcr_primer_p1>
		<pcr_primer_p2>TCATCCAAACTGTTCTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>552</pcr_amplicon_size>
		<canonical_amplicon>GAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGA</canonical_amplicon>
		<polymorphic_amplicon>GAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTRGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37781</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>25732</contig_pos>
        <strand></strand>
        <context>attttcaaaa[A/C]attttgtgaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAA</left_flank>
        <right_flank>ATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCGAAAAAGACGGTCTTTGCTCCATGTGTGTAGGCGAGATATCCTCCGGGTAGTTGGGACACAATGTAACCATAGAAGAAGGAGCTGAGAACGACTCCTTGGGTCATTGGAGTCCAGTTTTCAAAGTCACCATGAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGAAACGAGGTTTTCTAGTCATTATTGAATTTTAAAAGAATATTATTTTTTCAATTCACTTCGCAAGATGATATTTTTCAATCAAAATGATACTAGAAATTGCTCTGGTATCAAACTACTGGCTGAAATATTTCTCAAACTAAATTATGGAGCCCCCAATTTAAATAAAACGCGAGAATGTTTCGAAATGTGGGCCCCAAAGCCTTTGTTTTTGACAAAACCCATTATTCCAATCTCCTTTGAAGTTTTTCTGACTTCTGACTTTTTTCATTTTGTTTTCAACCCAATCCCTAATCCCAAAATGATCTTTGACGCCT</canonical>
            <polymorphic>AGCGAAAAAGACGGTCTTTGCTCCATGTGTGTAGGCGAGATATCCTCCGGGTAGTTGGGACACAATGTAACCATAGAAGAAGGAGCTGAGAACGACTCCTTGGGTCATTGGAGTCCAGTTTTCAAAGTCACCATGAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAMATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGAAACGAGGTTTTCTAGTCATTATTGAATTTTAAAAGAATATTATTTTTTCAATTCACTTCGCAAGATGATATTTTTCAATCAAAATGATACTAGAAATTGCTCTGGTATCAAACTACTGGCTGAAATATTTCTCAAACTAAATTATGGAGCCCCCAATTTAAATAAAACGCGAGAATGTTTCGAAATGTGGGCCCCAAAGCCTTTGTTTTTGACAAAACCCATTATTCCAATCTCCTTTGAAGTTTTTCTGACTTCTGACTTTTTTCATTTTGTTTTCAACCCAATCCCTAATCCCAAAATGATCTTTGACGCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>302 290 171 106 51 40 18 11 11</canonical_bands>
                <polymorphic_bands>302 290 171 106 51 51 18 11</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>171 160 142 137 106 45 45 40 28 25 23 23 18 15 11 11</canonical_bands>
                <polymorphic_bands>171 160 142 137 106 51 45 45 28 25 23 23 18 15 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACCTGAAATTGAGATTATCCT</pcr_primer_p1>
		<pcr_primer_p2>TCATCCAAACTGTTCTCATCT</pcr_primer_p2>
		<pcr_amplicon_size>552</pcr_amplicon_size>
		<canonical_amplicon>GAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAAATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGA</canonical_amplicon>
		<polymorphic_amplicon>GAACCTGAAATTGAGATTATCCTTTTTTTAAAATTGAACTCAAAATGAAGTTTATAATATTTGTCAAAATAATACACAAAAACGTATTTTTCAGTTTGTTTTCGCCATCTTGACCATTTTTCTCATTCTGAACAGCTCAAGTTTATGTCAAGTTGCCGATCACTTGGAAATTTTGGGAGGGTATAACACAGACATAAATTGAAAACGTTGCTTTCTTGGAATTTTTTGAAAATTCCTAGTTTTTCAGAAATTCTCCGATTTCTGAGACACACCCCGTTTCAGTCCGTTTTGTGCTAAAAACGTGAAAAACAGGGTGTTTTTTTTCAGAAATCAGAAAACATCTAGAAAACTAGAAATTTTCAAAAMATTTTGTGAATAAAAAAGTTTCTGTTGCACACTTTCCAAAATTTTCAAAGTGATAGAAGACTTGACAGCCGAGCTCAAAACTTTTGAAAATGGAAAGAAATGATCAAAATAGCTAAAAATCAACTGAAAAACAAGTGTTTTGTTTGTTTCATAGATCGGTACTGTAGATGAGAACAGTTTGGATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37782</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>36658</contig_pos>
        <strand>+</strand>
        <context>TGTACCTAAA[G/T]TTTTTTTGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAAGGGACGCACGGACGCAAATAATATTTCTCCAGGTTTTTGTACCTAAA</left_flank>
        <right_flank>TTTTTTTGTTTTCTTATTATTGCAAATGTAACAAATACGACATCATGCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAGAAAACCAATCTAAGCGTTCAAAGAACAAATGCACAAAACAAAGGAGGTGATTGGTGCCTGCCGCTGGTTTTTCACGTGAACTTTTGGCGAAGCGACACAGCTGGAATTGTTTTCAGTGGGAACATATGGTGGAGGATATCCTCCATTCCTCATCTTTTGAATTTTCTAATGGGGTTATTCAGTGTGAAGAATTTCAGCAAAATTGCTGGTTTTTCCTTATGCAGAGGGCAGAAAAATCAGCAATTTTTCTGAATTGCTGATTCTCTAAATAACCCCATAAAGAGCGATAGTGCCTGAAAGTTTAAAAATTTTTGCGTCTAAGAAATAAGAAAAGAGAGAAGGAGAAAAGCTAAAAGTGAAAAGTGACGTTTTCCTGTTATTTCCCGTTCAGAAAGTTTCCCGCTGATTTCTGAAGTTTGATCATATAAAGATAATCAGAATCGTTAAGGGACGCACGGACGCAAATAATATTTCTCCAGGTTTTTGTACCTAAATTTTTTTTGTTTTCTTATTATTGCAAATGTAACAAATACGACATCATGCAATCGTTTTGAGTTCATCTGAACTGGAGTGGTTCTCAATCATCAAAGATTATGGATGTTGGTATGGAACGGCGGTAAGAATGGAACATGTTGTCATGAGGGGTCTCGTGCACATCCTGTTTATTTGATAATAAAGATCAAGAACCCATGATGAAAGTCTAAACACAGTTCAAGGGACATGTAGCCTGAAAATTTTTGCAGGTCTTATTTTTAATTGTGTATAGACTGAAAACTCGTCAACTCATATTCAATGAAGTTTTTTCGAAAATTAAAATATTTTGTGTCCATCGGGTCCTTCTATTAAAAAGGCATTATTCCTTAAATTTTGAACAAGAATTCTAGAAAATCTTTTTCTAAACAAATCAGAAAAAATACCGGAGCAATGGAAGAACTCCCTCTAATTGAAGAGCCTCTGAAAAGGCAGGACTCTCAAAGTGTACCTTGAGATGATTG</canonical>
            <polymorphic>GAGAGAAAACCAATCTAAGCGTTCAAAGAACAAATGCACAAAACAAAGGAGGTGATTGGTGCCTGCCGCTGGTTTTTCACGTGAACTTTTGGCGAAGCGACACAGCTGGAATTGTTTTCAGTGGGAACATATGGTGGAGGATATCCTCCATTCCTCATCTTTTGAATTTTCTAATGGGGTTATTCAGTGTGAAGAATTTCAGCAAAATTGCTGGTTTTTCCTTATGCAGAGGGCAGAAAAATCAGCAATTTTTCTGAATTGCTGATTCTCTAAATAACCCCATAAAGAGCGATAGTGCCTGAAAGTTTAAAAATTTTTGCGTCTAAGAAATAAGAAAAGAGAGAAGGAGAAAAGCTAAAAGTGAAAAGTGACGTTTTCCTGTTATTTCCCGTTCAGAAAGTTTCCCGCTGATTTCTGAAGTTTGATCATATAAAGATAATCAGAATCGTTAAGGGACGCACGGACGCAAATAATATTTCTCCAGGTTTTTGTACCTAAAKTTTTTTTGTTTTCTTATTATTGCAAATGTAACAAATACGACATCATGCAATCGTTTTGAGTTCATCTGAACTGGAGTGGTTCTCAATCATCAAAGATTATGGATGTTGGTATGGAACGGCGGTAAGAATGGAACATGTTGTCATGAGGGGTCTCGTGCACATCCTGTTTATTTGATAATAAAGATCAAGAACCCATGATGAAAGTCTAAACACAGTTCAAGGGACATGTAGCCTGAAAATTTTTGCAGGTCTTATTTTTAATTGTGTATAGACTGAAAACTCGTCAACTCATATTCAATGAAGTTTTTTCGAAAATTAAAATATTTTGTGTCCATCGGGTCCTTCTATTAAAAAGGCATTATTCCTTAAATTTTGAACAAGAATTCTAGAAAATCTTTTTCTAAACAAATCAGAAAAAATACCGGAGCAATGGAAGAACTCCCTCTAATTGAAGAGCCTCTGAAAAGGCAGGACTCTCAAAGTGTACCTTGAGATGATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>240 186 164 131 119 117 30 13</canonical_bands>
                <polymorphic_bands>426 164 131 119 117 30 13</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>240 186 109 65 55 55 55 54 54 41 30 22 13 11 10</canonical_bands>
                <polymorphic_bands>426 109 65 55 55 55 54 54 41 30 22 13 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAAGCTAAAAGTGAAAAGTGA</pcr_primer_p1>
		<pcr_primer_p2>ATCTTTGATGATTGAGAACCAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAAAGCTAAAAGTGAAAAGTGACGTTTTCCTGTTATTTCCCGTTCAGAAAGTTTCCCGCTGATTTCTGAAGTTTGATCATATAAAGATAATCAGAATCGTTAAGGGACGCACGGACGCAAATAATATTTCTCCAGGTTTTTGTACCTAAATTTTTTTTGTTTTCTTATTATTGCAAATGTAACAAATACGACATCATGCAATCGTTTTGAGTTCATCTGAACTGGAGTGGTTCTCAATCATCAAAGAT</canonical_amplicon>
		<polymorphic_amplicon>GAAAAGCTAAAAGTGAAAAGTGACGTTTTCCTGTTATTTCCCGTTCAGAAAGTTTCCCGCTGATTTCTGAAGTTTGATCATATAAAGATAATCAGAATCGTTAAGGGACGCACGGACGCAAATAATATTTCTCCAGGTTTTTGTACCTAAAKTTTTTTTGTTTTCTTATTATTGCAAATGTAACAAATACGACATCATGCAATCGTTTTGAGTTCATCTGAACTGGAGTGGTTCTCAATCATCAAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37783</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>36765</contig_pos>
        <strand>+</strand>
        <context>TTATGGATGW[A/T]GGTATGGAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAGTTCATCTGAACTGGAGTGGTTCTCAATCATCAAAGATTATGGATGT</left_flank>
        <right_flank>GGTATGGAACGGCGGTAAGAATGGAACATGTTGTCATGAGGGGTCTCGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAATTGTTTTCAGTGGGAACATATGGTGGAGGATATCCTCCATTCCTCATCTTTTGAATTTTCTAATGGGGTTATTCAGTGTGAAGAATTTCAGCAAAATTGCTGGTTTTTCCTTATGCAGAGGGCAGAAAAATCAGCAATTTTTCTGAATTGCTGATTCTCTAAATAACCCCATAAAGAGCGATAGTGCCTGAAAGTTTAAAAATTTTTGCGTCTAAGAAATAAGAAAAGAGAGAAGGAGAAAAGCTAAAAGTGAAAAGTGACGTTTTCCTGTTATTTCCCGTTCAGAAAGTTTCCCGCTGATTTCTGAAGTTTGATCATATAAAGATAATCAGAATCGTTAAGGGACGCACGGACGCAAATAATATTTCTCCAGGTTTTTGTACCTAAATTTTTTTTGTTTTCTTATTATTGCAAATGTAACAAATACGACATCATGCAATCGTTTTGAGTTCATCTGAACTGGAGTGGTTCTCAATCATCAAAGATTATGGATGTTGGTATGGAACGGCGGTAAGAATGGAACATGTTGTCATGAGGGGTCTCGTGCACATCCTGTTTATTTGATAATAAAGATCAAGAACCCATGATGAAAGTCTAAACACAGTTCAAGGGACATGTAGCCTGAAAATTTTTGCAGGTCTTATTTTTAATTGTGTATAGACTGAAAACTCGTCAACTCATATTCAATGAAGTTTTTTCGAAAATTAAAATATTTTGTGTCCATCGGGTCCTTCTATTAAAAAGGCATTATTCCTTAAATTTTGAACAAGAATTCTAGAAAATCTTTTTCTAAACAAATCAGAAAAAATACCGGAGCAATGGAAGAACTCCCTCTAATTGAAGAGCCTCTGAAAAGGCAGGACTCTCAAAGTGTACCTTGAGATGATTGAGGAGCAGAACCTTCTAATGAAGTCTTTACGGTATAACGTGTTTCCCAAATTTTATTGAGTATGTTATCTCTAATTTCGCGGTTCGGTTTCTTGTAAAACTGCTGTC</canonical>
            <polymorphic>GGAATTGTTTTCAGTGGGAACATATGGTGGAGGATATCCTCCATTCCTCATCTTTTGAATTTTCTAATGGGGTTATTCAGTGTGAAGAATTTCAGCAAAATTGCTGGTTTTTCCTTATGCAGAGGGCAGAAAAATCAGCAATTTTTCTGAATTGCTGATTCTCTAAATAACCCCATAAAGAGCGATAGTGCCTGAAAGTTTAAAAATTTTTGCGTCTAAGAAATAAGAAAAGAGAGAAGGAGAAAAGCTAAAAGTGAAAAGTGACGTTTTCCTGTTATTTCCCGTTCAGAAAGTTTCCCGCTGATTTCTGAAGTTTGATCATATAAAGATAATCAGAATCGTTAAGGGACGCACGGACGCAAATAATATTTCTCCAGGTTTTTGTACCTAAATTTTTTTTGTTTTCTTATTATTGCAAATGTAACAAATACGACATCATGCAATCGTTTTGAGTTCATCTGAACTGGAGTGGTTCTCAATCATCAAAGATTATGGATGTWGGTATGGAACGGCGGTAAGAATGGAACATGTTGTCATGAGGGGTCTCGTGCACATCCTGTTTATTTGATAATAAAGATCAAGAACCCATGATGAAAGTCTAAACACAGTTCAAGGGACATGTAGCCTGAAAATTTTTGCAGGTCTTATTTTTAATTGTGTATAGACTGAAAACTCGTCAACTCATATTCAATGAAGTTTTTTCGAAAATTAAAATATTTTGTGTCCATCGGGTCCTTCTATTAAAAAGGCATTATTCCTTAAATTTTGAACAAGAATTCTAGAAAATCTTTTTCTAAACAAATCAGAAAAAATACCGGAGCAATGGAAGAACTCCCTCTAATTGAAGAGCCTCTGAAAAGGCAGGACTCTCAAAGTGTACCTTGAGATGATTGAGGAGCAGAACCTTCTAATGAAGTCTTTACGGTATAACGTGTTTCCCAAATTTTATTGAGTATGTTATCTCTAATTTCGCGGTTCGGTTTCTTGTAAAACTGCTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTTCTCCAGGTTTTTGTACC</pcr_primer_p1>
		<pcr_primer_p2>CCTTGAACTGTGTTTAGACTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATTTCTCCAGGTTTTTGTACCTAAATTTTTTTTGTTTTCTTATTATTGCAAATGTAACAAATACGACATCATGCAATCGTTTTGAGTTCATCTGAACTGGAGTGGTTCTCAATCATCAAAGATTATGGATGTTGGTATGGAACGGCGGTAAGAATGGAACATGTTGTCATGAGGGGTCTCGTGCACATCCTGTTTATTTGATAATAAAGATCAAGAACCCATGATGAAAGTCTAAACACAGTTCAAGG</canonical_amplicon>
		<polymorphic_amplicon>ATATTTCTCCAGGTTTTTGTACCTAAATTTTTTTTGTTTTCTTATTATTGCAAATGTAACAAATACGACATCATGCAATCGTTTTGAGTTCATCTGAACTGGAGTGGTTCTCAATCATCAAAGATTATGGATGTWGGTATGGAACGGCGGTAAGAATGGAACATGTTGTCATGAGGGGTCTCGTGCACATCCTGTTTATTTGATAATAAAGATCAAGAACCCATGATGAAAGTCTAAACACAGTTCAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37784</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>48150</contig_pos>
        <strand></strand>
        <context>ATTTAAAGAT[C/T]AWTGTTCCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGAT</left_flank>
        <right_flank>ATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTTCATGAATTTTGTACGAAACTTCGTCGAATTTTTTGATGCAAAATTTCGGAAAAATAGAAGAACCCTCCAAAGACACCTGGGAACAATAGAAGGGCCGGCCCTTCTAATACAGGTTTTACGGTATTAAAAAATTCGAATCTTGCGAGTTCTGTTGAAATTTGTCAGAATGTTCTGTTTCAAACTTGTTTTCCTCATTTCTAGACTAAAAACCGTCCCATATGACGCACAAAGAAGGATTGCTCACTAAATGAGCCCAATTTCAAACAGCCAGTAATAAAAAATAGAAAAAAAACGGCCAATAACAAAAACGAGAGCTCATTGAAAATTATTTTTGGGGTTATGATATTTTTATGACAACGTTCAATTCTTTACTGTCTGGATAGGAGCCATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAAGCAACATATGTTTCATATATAGTTTACATGTAATAATCTAAATTGTGTATGTGTATAACAAACAACAAGAGGAGCAAAAGTACGTACTGAGCACATCCATGAATAATGAACTCTTTTGTGGTATGGAAAATGGGTCAACGAGAAAGAAAAGAGGAGGGGGGG</canonical>
            <polymorphic>GATTTTCATGAATTTTGTACGAAACTTCGTCGAATTTTTTGATGCAAAATTTCGGAAAAATAGAAGAACCCTCCAAAGACACCTGGGAACAATAGAAGGGCCGGCCCTTCTAATACAGGTTTTACGGTATTAAAAAATTCGAATCTTGCGAGTTCTGTTGAAATTTGTCAGAATGTTCTGTTTCAAACTTGTTTTCCTCATTTCTAGACTAAAAACCGTCCCATATGACGCACAAAGAAGGATTGCTCACTAAATGAGCCCAATTTCAAACAGCCAGTAATAAAAAATAGAAAAAAAACGGCCAATAACAAAAACGAGAGCTCATTGAAAATTATTTTTGGGGTTATGATATTTTTATGACAACGTTCAATTCTTTACTGTCTGGATAGGAGCCATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATYATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAAGCAACATATGTTTCATATATAGTTTACATGTAATAATCTAAATTGTGTATGTGTATAACAAACAACAAGAGGAGCAAAAGTACGTACTGAGCACATCCATGAATAATGAACTCTTTTGTGGTATGGAAAATGGGTCAACGAGAAAGAAAAGAGGAGGGGGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>439 437 67 57</canonical_bands>
                <polymorphic_bands>439 437 124</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACAACGTTCAATTCTTTACTGT</pcr_primer_p1>
		<pcr_primer_p2>CACACAGACAAAACATCGTTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GACAACGTTCAATTCTTTACTGTCTGGATAGGAGCCATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTG</canonical_amplicon>
		<polymorphic_amplicon>GACAACGTTCAATTCTTTACTGTCTGGATAGGAGCCATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATYATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37785</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>48152</contig_pos>
        <strand></strand>
        <context>TTAAAGATYA[T/A]TGTTCCAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCA</left_flank>
        <right_flank>TGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCATGAATTTTGTACGAAACTTCGTCGAATTTTTTGATGCAAAATTTCGGAAAAATAGAAGAACCCTCCAAAGACACCTGGGAACAATAGAAGGGCCGGCCCTTCTAATACAGGTTTTACGGTATTAAAAAATTCGAATCTTGCGAGTTCTGTTGAAATTTGTCAGAATGTTCTGTTTCAAACTTGTTTTCCTCATTTCTAGACTAAAAACCGTCCCATATGACGCACAAAGAAGGATTGCTCACTAAATGAGCCCAATTTCAAACAGCCAGTAATAAAAAATAGAAAAAAAACGGCCAATAACAAAAACGAGAGCTCATTGAAAATTATTTTTGGGGTTATGATATTTTTATGACAACGTTCAATTCTTTACTGTCTGGATAGGAGCCATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAAGCAACATATGTTTCATATATAGTTTACATGTAATAATCTAAATTGTGTATGTGTATAACAAACAACAAGAGGAGCAAAAGTACGTACTGAGCACATCCATGAATAATGAACTCTTTTGTGGTATGGAAAATGGGTCAACGAGAAAGAAAAGAGGAGGGGGGGGG</canonical>
            <polymorphic>TTTTCATGAATTTTGTACGAAACTTCGTCGAATTTTTTGATGCAAAATTTCGGAAAAATAGAAGAACCCTCCAAAGACACCTGGGAACAATAGAAGGGCCGGCCCTTCTAATACAGGTTTTACGGTATTAAAAAATTCGAATCTTGCGAGTTCTGTTGAAATTTGTCAGAATGTTCTGTTTCAAACTTGTTTTCCTCATTTCTAGACTAAAAACCGTCCCATATGACGCACAAAGAAGGATTGCTCACTAAATGAGCCCAATTTCAAACAGCCAGTAATAAAAAATAGAAAAAAAACGGCCAATAACAAAAACGAGAGCTCATTGAAAATTATTTTTGGGGTTATGATATTTTTATGACAACGTTCAATTCTTTACTGTCTGGATAGGAGCCATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCAWTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAAGCAACATATGTTTCATATATAGTTTACATGTAATAATCTAAATTGTGTATGTGTATAACAAACAACAAGAGGAGCAAAAGTACGTACTGAGCACATCCATGAATAATGAACTCTTTTGTGGTATGGAAAATGGGTCAACGAGAAAGAAAAGAGGAGGGGGGGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAACGTTCAATTCTTTACTGT</pcr_primer_p1>
		<pcr_primer_p2>CACACAGACAAAACATCGTTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GACAACGTTCAATTCTTTACTGTCTGGATAGGAGCCATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTG</canonical_amplicon>
		<polymorphic_amplicon>GACAACGTTCAATTCTTTACTGTCTGGATAGGAGCCATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCAWTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37786</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>48205</contig_pos>
        <strand></strand>
        <context>TCATAAAAAC[C/T]RAAGCAAGKA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAAC</left_flank>
        <right_flank>GAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATAGAAGAACCCTCCAAAGACACCTGGGAACAATAGAAGGGCCGGCCCTTCTAATACAGGTTTTACGGTATTAAAAAATTCGAATCTTGCGAGTTCTGTTGAAATTTGTCAGAATGTTCTGTTTCAAACTTGTTTTCCTCATTTCTAGACTAAAAACCGTCCCATATGACGCACAAAGAAGGATTGCTCACTAAATGAGCCCAATTTCAAACAGCCAGTAATAAAAAATAGAAAAAAAACGGCCAATAACAAAAACGAGAGCTCATTGAAAATTATTTTTGGGGTTATGATATTTTTATGACAACGTTCAATTCTTTACTGTCTGGATAGGAGCCATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAAGCAACATATGTTTCATATATAGTTTACATGTAATAATCTAAATTGTGTATGTGTATAACAAACAACAAGAGGAGCAAAAGTACGTACTGAGCACATCCATGAATAATGAACTCTTTTGTGGTATGGAAAATGGGTCAACGAGAAAGAAAAGAGGAGGGGGGGGGGAGTGGTCAAATAATAATAATAATAATAATAACAGCAGAATGCCTATAGCCAG</canonical>
            <polymorphic>AAAAATAGAAGAACCCTCCAAAGACACCTGGGAACAATAGAAGGGCCGGCCCTTCTAATACAGGTTTTACGGTATTAAAAAATTCGAATCTTGCGAGTTCTGTTGAAATTTGTCAGAATGTTCTGTTTCAAACTTGTTTTCCTCATTTCTAGACTAAAAACCGTCCCATATGACGCACAAAGAAGGATTGCTCACTAAATGAGCCCAATTTCAAACAGCCAGTAATAAAAAATAGAAAAAAAACGGCCAATAACAAAAACGAGAGCTCATTGAAAATTATTTTTGGGGTTATGATATTTTTATGACAACGTTCAATTCTTTACTGTCTGGATAGGAGCCATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACYGAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAAGCAACATATGTTTCATATATAGTTTACATGTAATAATCTAAATTGTGTATGTGTATAACAAACAACAAGAGGAGCAAAAGTACGTACTGAGCACATCCATGAATAATGAACTCTTTTGTGGTATGGAAAATGGGTCAACGAGAAAGAAAAGAGGAGGGGGGGGGGAGTGGTCAAATAATAATAATAATAATAATAACAGCAGAATGCCTATAGCCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATGCGACATGAAAACAGAA</pcr_primer_p1>
		<pcr_primer_p2>ACCAAGACAAACTGAAAGTCAC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGT</canonical_amplicon>
		<polymorphic_amplicon>ATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACYGAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37787</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>48206</contig_pos>
        <strand></strand>
        <context>CATAAAAACY[G/A]AAGCAAGKAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACC</left_flank>
        <right_flank>AAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGG</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATAGAAGAACCCTCCAAAGACACCTGGGAACAATAGAAGGGCCGGCCCTTCTAATACAGGTTTTACGGTATTAAAAAATTCGAATCTTGCGAGTTCTGTTGAAATTTGTCAGAATGTTCTGTTTCAAACTTGTTTTCCTCATTTCTAGACTAAAAACCGTCCCATATGACGCACAAAGAAGGATTGCTCACTAAATGAGCCCAATTTCAAACAGCCAGTAATAAAAAATAGAAAAAAAACGGCCAATAACAAAAACGAGAGCTCATTGAAAATTATTTTTGGGGTTATGATATTTTTATGACAACGTTCAATTCTTTACTGTCTGGATAGGAGCCATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAAGCAACATATGTTTCATATATAGTTTACATGTAATAATCTAAATTGTGTATGTGTATAACAAACAACAAGAGGAGCAAAAGTACGTACTGAGCACATCCATGAATAATGAACTCTTTTGTGGTATGGAAAATGGGTCAACGAGAAAGAAAAGAGGAGGGGGGGGGGAGTGGTCAAATAATAATAATAATAATAATAACAGCAGAATGCCTATAGCCAGC</canonical>
            <polymorphic>AAAATAGAAGAACCCTCCAAAGACACCTGGGAACAATAGAAGGGCCGGCCCTTCTAATACAGGTTTTACGGTATTAAAAAATTCGAATCTTGCGAGTTCTGTTGAAATTTGTCAGAATGTTCTGTTTCAAACTTGTTTTCCTCATTTCTAGACTAAAAACCGTCCCATATGACGCACAAAGAAGGATTGCTCACTAAATGAGCCCAATTTCAAACAGCCAGTAATAAAAAATAGAAAAAAAACGGCCAATAACAAAAACGAGAGCTCATTGAAAATTATTTTTGGGGTTATGATATTTTTATGACAACGTTCAATTCTTTACTGTCTGGATAGGAGCCATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCRAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAAGCAACATATGTTTCATATATAGTTTACATGTAATAATCTAAATTGTGTATGTGTATAACAAACAACAAGAGGAGCAAAAGTACGTACTGAGCACATCCATGAATAATGAACTCTTTTGTGGTATGGAAAATGGGTCAACGAGAAAGAAAAGAGGAGGGGGGGGGGAGTGGTCAAATAATAATAATAATAATAATAACAGCAGAATGCCTATAGCCAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATGCGACATGAAAACAGAA</pcr_primer_p1>
		<pcr_primer_p2>ACCAAGACAAACTGAAAGTCAC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGT</canonical_amplicon>
		<polymorphic_amplicon>ATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCRAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37788</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>48214</contig_pos>
        <strand></strand>
        <context>CYRAAGCAAG[G/T]ATCCAAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAG</left_flank>
        <right_flank>ATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAACCCTCCAAAGACACCTGGGAACAATAGAAGGGCCGGCCCTTCTAATACAGGTTTTACGGTATTAAAAAATTCGAATCTTGCGAGTTCTGTTGAAATTTGTCAGAATGTTCTGTTTCAAACTTGTTTTCCTCATTTCTAGACTAAAAACCGTCCCATATGACGCACAAAGAAGGATTGCTCACTAAATGAGCCCAATTTCAAACAGCCAGTAATAAAAAATAGAAAAAAAACGGCCAATAACAAAAACGAGAGCTCATTGAAAATTATTTTTGGGGTTATGATATTTTTATGACAACGTTCAATTCTTTACTGTCTGGATAGGAGCCATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAAGCAACATATGTTTCATATATAGTTTACATGTAATAATCTAAATTGTGTATGTGTATAACAAACAACAAGAGGAGCAAAAGTACGTACTGAGCACATCCATGAATAATGAACTCTTTTGTGGTATGGAAAATGGGTCAACGAGAAAGAAAAGAGGAGGGGGGGGGGAGTGGTCAAATAATAATAATAATAATAATAACAGCAGAATGCCTATAGCCAGCTACTGGGA</canonical>
            <polymorphic>AGAACCCTCCAAAGACACCTGGGAACAATAGAAGGGCCGGCCCTTCTAATACAGGTTTTACGGTATTAAAAAATTCGAATCTTGCGAGTTCTGTTGAAATTTGTCAGAATGTTCTGTTTCAAACTTGTTTTCCTCATTTCTAGACTAAAAACCGTCCCATATGACGCACAAAGAAGGATTGCTCACTAAATGAGCCCAATTTCAAACAGCCAGTAATAAAAAATAGAAAAAAAACGGCCAATAACAAAAACGAGAGCTCATTGAAAATTATTTTTGGGGTTATGATATTTTTATGACAACGTTCAATTCTTTACTGTCTGGATAGGAGCCATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAGKATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAAGCAACATATGTTTCATATATAGTTTACATGTAATAATCTAAATTGTGTATGTGTATAACAAACAACAAGAGGAGCAAAAGTACGTACTGAGCACATCCATGAATAATGAACTCTTTTGTGGTATGGAAAATGGGTCAACGAGAAAGAAAAGAGGAGGGGGGGGGGAGTGGTCAAATAATAATAATAATAATAATAACAGCAGAATGCCTATAGCCAGCTACTGGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGATCC</site>
                <isoschizomers>
                    <enzyme>BamHI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>501 375 67 57</canonical_bands>
                <polymorphic_bands>568 375 57</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>498 496 6</canonical_bands>
                <polymorphic_bands>994 6</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>499 327 174</canonical_bands>
                <polymorphic_bands>673 327</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATGCGACATGAAAACAGAA</pcr_primer_p1>
		<pcr_primer_p2>ACCAAGACAAACTGAAAGTCAC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGT</canonical_amplicon>
		<polymorphic_amplicon>ATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAGKATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37789</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>48278</contig_pos>
        <strand></strand>
        <context>AATATGAATG[C/T]GTGACTTTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATG</left_flank>
        <right_flank>GTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAAAAAATTCGAATCTTGCGAGTTCTGTTGAAATTTGTCAGAATGTTCTGTTTCAAACTTGTTTTCCTCATTTCTAGACTAAAAACCGTCCCATATGACGCACAAAGAAGGATTGCTCACTAAATGAGCCCAATTTCAAACAGCCAGTAATAAAAAATAGAAAAAAAACGGCCAATAACAAAAACGAGAGCTCATTGAAAATTATTTTTGGGGTTATGATATTTTTATGACAACGTTCAATTCTTTACTGTCTGGATAGGAGCCATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAAGCAACATATGTTTCATATATAGTTTACATGTAATAATCTAAATTGTGTATGTGTATAACAAACAACAAGAGGAGCAAAAGTACGTACTGAGCACATCCATGAATAATGAACTCTTTTGTGGTATGGAAAATGGGTCAACGAGAAAGAAAAGAGGAGGGGGGGGGGAGTGGTCAAATAATAATAATAATAATAATAACAGCAGAATGCCTATAGCCAGCTACTGGGATAGGTAGGTCACTTTGATTGGATTTGAATTTGATTAGATTGCAAAAAAAACATACATAGTGGCC</canonical>
            <polymorphic>ATTAAAAAATTCGAATCTTGCGAGTTCTGTTGAAATTTGTCAGAATGTTCTGTTTCAAACTTGTTTTCCTCATTTCTAGACTAAAAACCGTCCCATATGACGCACAAAGAAGGATTGCTCACTAAATGAGCCCAATTTCAAACAGCCAGTAATAAAAAATAGAAAAAAAACGGCCAATAACAAAAACGAGAGCTCATTGAAAATTATTTTTGGGGTTATGATATTTTTATGACAACGTTCAATTCTTTACTGTCTGGATAGGAGCCATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGYGTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAAGCAACATATGTTTCATATATAGTTTACATGTAATAATCTAAATTGTGTATGTGTATAACAAACAACAAGAGGAGCAAAAGTACGTACTGAGCACATCCATGAATAATGAACTCTTTTGTGGTATGGAAAATGGGTCAACGAGAAAGAAAAGAGGAGGGGGGGGGGAGTGGTCAAATAATAATAATAATAATAATAACAGCAGAATGCCTATAGCCAGCTACTGGGATAGGTAGGTCACTTTGATTGGATTTGAATTTGATTAGATTGCAAAAAAAACATACATAGTGGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGGAGAAGAAAAGAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TCTGAGAGAAAGAATAACAAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>CCAGGAGAAGAAAAGAAGAATTTAAAGATCATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATTCTTTGTTATTCTTTCTCTCAGA</canonical_amplicon>
		<polymorphic_amplicon>CCAGGAGAAGAAAAGAAGAATTTAAAGATCATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGYGTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATTCTTTGTTATTCTTTCTCTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37790</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>48369</contig_pos>
        <strand></strand>
        <context>TAACTGATGC[A/C]TATCTTTTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTAAAAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGC</left_flank>
        <right_flank>TATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAG</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCATATGACGCACAAAGAAGGATTGCTCACTAAATGAGCCCAATTTCAAACAGCCAGTAATAAAAAATAGAAAAAAAACGGCCAATAACAAAAACGAGAGCTCATTGAAAATTATTTTTGGGGTTATGATATTTTTATGACAACGTTCAATTCTTTACTGTCTGGATAGGAGCCATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAAGCAACATATGTTTCATATATAGTTTACATGTAATAATCTAAATTGTGTATGTGTATAACAAACAACAAGAGGAGCAAAAGTACGTACTGAGCACATCCATGAATAATGAACTCTTTTGTGGTATGGAAAATGGGTCAACGAGAAAGAAAAGAGGAGGGGGGGGGGAGTGGTCAAATAATAATAATAATAATAATAACAGCAGAATGCCTATAGCCAGCTACTGGGATAGGTAGGTCACTTTGATTGGATTTGAATTTGATTAGATTGCAAAAAAAACATACATAGTGGCCGTTTTTGATTAGATTTAGAGTAGCCGTTTTGATTGGATTTTGAAAAAAGAGTGGCCAGCTTCAAAAAAAAGTAATATTAGCTTAAACTGAA</canonical>
            <polymorphic>CCCATATGACGCACAAAGAAGGATTGCTCACTAAATGAGCCCAATTTCAAACAGCCAGTAATAAAAAATAGAAAAAAAACGGCCAATAACAAAAACGAGAGCTCATTGAAAATTATTTTTGGGGTTATGATATTTTTATGACAACGTTCAATTCTTTACTGTCTGGATAGGAGCCATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCMTATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAAGCAACATATGTTTCATATATAGTTTACATGTAATAATCTAAATTGTGTATGTGTATAACAAACAACAAGAGGAGCAAAAGTACGTACTGAGCACATCCATGAATAATGAACTCTTTTGTGGTATGGAAAATGGGTCAACGAGAAAGAAAAGAGGAGGGGGGGGGGAGTGGTCAAATAATAATAATAATAATAATAACAGCAGAATGCCTATAGCCAGCTACTGGGATAGGTAGGTCACTTTGATTGGATTTGAATTTGATTAGATTGCAAAAAAAACATACATAGTGGCCGTTTTTGATTAGATTTAGAGTAGCCGTTTTGATTGGATTTTGAAAAAAGAGTGGCCAGCTTCAAAAAAAAGTAATATTAGCTTAAACTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATGCAT</site>
                <isoschizomers>
                    <enzyme>BfrBI</enzyme>
                    <enzyme>EcoT22I</enzyme>
                    <enzyme>Mph1103I</enzyme>
                    <enzyme>NsiI</enzyme>
                    <enzyme>Ppu10I</enzyme>
                    <enzyme>Zsp2I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>498 322 114 66</canonical_bands>
                <polymorphic_bands>564 322 114</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAACGATGTTTTGTCTGTGTG</pcr_primer_p1>
		<pcr_primer_p2>TGTTACTTGCTCTCTCCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACA</canonical_amplicon>
		<polymorphic_amplicon>ATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCMTATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37791</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>48415</contig_pos>
        <strand></strand>
        <context>TTTTTCAATA[A/G]RAAGAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATA</left_flank>
        <right_flank>GAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAACAGCCAGTAATAAAAAATAGAAAAAAAACGGCCAATAACAAAAACGAGAGCTCATTGAAAATTATTTTTGGGGTTATGATATTTTTATGACAACGTTCAATTCTTTACTGTCTGGATAGGAGCCATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAAGCAACATATGTTTCATATATAGTTTACATGTAATAATCTAAATTGTGTATGTGTATAACAAACAACAAGAGGAGCAAAAGTACGTACTGAGCACATCCATGAATAATGAACTCTTTTGTGGTATGGAAAATGGGTCAACGAGAAAGAAAAGAGGAGGGGGGGGGGAGTGGTCAAATAATAATAATAATAATAATAACAGCAGAATGCCTATAGCCAGCTACTGGGATAGGTAGGTCACTTTGATTGGATTTGAATTTGATTAGATTGCAAAAAAAACATACATAGTGGCCGTTTTTGATTAGATTTAGAGTAGCCGTTTTGATTGGATTTTGAAAAAAGAGTGGCCAGCTTCAAAAAAAAGTAATATTAGCTTAAACTGAACGATCTTTAACGTATAGCTCTAACAAGTTAAAGAATATGTGAAAAG</canonical>
            <polymorphic>TCAAACAGCCAGTAATAAAAAATAGAAAAAAAACGGCCAATAACAAAAACGAGAGCTCATTGAAAATTATTTTTGGGGTTATGATATTTTTATGACAACGTTCAATTCTTTACTGTCTGGATAGGAGCCATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATARGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAAGCAACATATGTTTCATATATAGTTTACATGTAATAATCTAAATTGTGTATGTGTATAACAAACAACAAGAGGAGCAAAAGTACGTACTGAGCACATCCATGAATAATGAACTCTTTTGTGGTATGGAAAATGGGTCAACGAGAAAGAAAAGAGGAGGGGGGGGGGAGTGGTCAAATAATAATAATAATAATAATAACAGCAGAATGCCTATAGCCAGCTACTGGGATAGGTAGGTCACTTTGATTGGATTTGAATTTGATTAGATTGCAAAAAAAACATACATAGTGGCCGTTTTTGATTAGATTTAGAGTAGCCGTTTTGATTGGATTTTGAAAAAAGAGTGGCCAGCTTCAAAAAAAAGTAATATTAGCTTAAACTGAACGATCTTTAACGTATAGCTCTAACAAGTTAAAGAATATGTGAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAACGATGTTTTGTCTGTGTG</pcr_primer_p1>
		<pcr_primer_p2>TGTTACTTGCTCTCTCCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACA</canonical_amplicon>
		<polymorphic_amplicon>ATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATARGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37792</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>48416</contig_pos>
        <strand></strand>
        <context>TTTTCAATAR[G/A]AAGAAAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAA</left_flank>
        <right_flank>AAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAACAGCCAGTAATAAAAAATAGAAAAAAAACGGCCAATAACAAAAACGAGAGCTCATTGAAAATTATTTTTGGGGTTATGATATTTTTATGACAACGTTCAATTCTTTACTGTCTGGATAGGAGCCATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAAGCAACATATGTTTCATATATAGTTTACATGTAATAATCTAAATTGTGTATGTGTATAACAAACAACAAGAGGAGCAAAAGTACGTACTGAGCACATCCATGAATAATGAACTCTTTTGTGGTATGGAAAATGGGTCAACGAGAAAGAAAAGAGGAGGGGGGGGGGAGTGGTCAAATAATAATAATAATAATAATAACAGCAGAATGCCTATAGCCAGCTACTGGGATAGGTAGGTCACTTTGATTGGATTTGAATTTGATTAGATTGCAAAAAAAACATACATAGTGGCCGTTTTTGATTAGATTTAGAGTAGCCGTTTTGATTGGATTTTGAAAAAAGAGTGGCCAGCTTCAAAAAAAAGTAATATTAGCTTAAACTGAACGATCTTTAACGTATAGCTCTAACAAGTTAAAGAATATGTGAAAAGA</canonical>
            <polymorphic>CAAACAGCCAGTAATAAAAAATAGAAAAAAAACGGCCAATAACAAAAACGAGAGCTCATTGAAAATTATTTTTGGGGTTATGATATTTTTATGACAACGTTCAATTCTTTACTGTCTGGATAGGAGCCATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAARAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAAGCAACATATGTTTCATATATAGTTTACATGTAATAATCTAAATTGTGTATGTGTATAACAAACAACAAGAGGAGCAAAAGTACGTACTGAGCACATCCATGAATAATGAACTCTTTTGTGGTATGGAAAATGGGTCAACGAGAAAGAAAAGAGGAGGGGGGGGGGAGTGGTCAAATAATAATAATAATAATAATAACAGCAGAATGCCTATAGCCAGCTACTGGGATAGGTAGGTCACTTTGATTGGATTTGAATTTGATTAGATTGCAAAAAAAACATACATAGTGGCCGTTTTTGATTAGATTTAGAGTAGCCGTTTTGATTGGATTTTGAAAAAAGAGTGGCCAGCTTCAAAAAAAAGTAATATTAGCTTAAACTGAACGATCTTTAACGTATAGCTCTAACAAGTTAAAGAATATGTGAAAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAACGATGTTTTGTCTGTGTG</pcr_primer_p1>
		<pcr_primer_p2>TGTTACTTGCTCTCTCCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACA</canonical_amplicon>
		<polymorphic_amplicon>ATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAARAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37793</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>48449</contig_pos>
        <strand></strand>
        <context>GAAAGTGGGC[G/A]RAGCTTGAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGC</left_flank>
        <right_flank>GAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAAGCAACATATGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCCAATAACAAAAACGAGAGCTCATTGAAAATTATTTTTGGGGTTATGATATTTTTATGACAACGTTCAATTCTTTACTGTCTGGATAGGAGCCATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAAGCAACATATGTTTCATATATAGTTTACATGTAATAATCTAAATTGTGTATGTGTATAACAAACAACAAGAGGAGCAAAAGTACGTACTGAGCACATCCATGAATAATGAACTCTTTTGTGGTATGGAAAATGGGTCAACGAGAAAGAAAAGAGGAGGGGGGGGGGAGTGGTCAAATAATAATAATAATAATAATAACAGCAGAATGCCTATAGCCAGCTACTGGGATAGGTAGGTCACTTTGATTGGATTTGAATTTGATTAGATTGCAAAAAAAACATACATAGTGGCCGTTTTTGATTAGATTTAGAGTAGCCGTTTTGATTGGATTTTGAAAAAAGAGTGGCCAGCTTCAAAAAAAAGTAATATTAGCTTAAACTGAACGATCTTTAACGTATAGCTCTAACAAGTTAAAGAATATGTGAAAAGATCAGCACCTCTTGAATTAATGGGAAGAGATTAA</canonical>
            <polymorphic>GGCCAATAACAAAAACGAGAGCTCATTGAAAATTATTTTTGGGGTTATGATATTTTTATGACAACGTTCAATTCTTTACTGTCTGGATAGGAGCCATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCRGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAAGCAACATATGTTTCATATATAGTTTACATGTAATAATCTAAATTGTGTATGTGTATAACAAACAACAAGAGGAGCAAAAGTACGTACTGAGCACATCCATGAATAATGAACTCTTTTGTGGTATGGAAAATGGGTCAACGAGAAAGAAAAGAGGAGGGGGGGGGGAGTGGTCAAATAATAATAATAATAATAATAACAGCAGAATGCCTATAGCCAGCTACTGGGATAGGTAGGTCACTTTGATTGGATTTGAATTTGATTAGATTGCAAAAAAAACATACATAGTGGCCGTTTTTGATTAGATTTAGAGTAGCCGTTTTGATTGGATTTTGAAAAAAGAGTGGCCAGCTTCAAAAAAAAGTAATATTAGCTTAAACTGAACGATCTTTAACGTATAGCTCTAACAAGTTAAAGAATATGTGAAAAGATCAGCACCTCTTGAATTAATGGGAAGAGATTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTCTTTGTTATTCTTTCTCTCA</pcr_primer_p1>
		<pcr_primer_p2>GTACTTTTGCTCCTCTTGTTGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAAGCAACATATGTTTCATATATAGTTTACATGTAATAATCTAAATTGTGTATGTGTATAACAAACAACAAGAGGAGCAAAAGTAC</canonical_amplicon>
		<polymorphic_amplicon>AAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCRGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAAGCAACATATGTTTCATATATAGTTTACATGTAATAATCTAAATTGTGTATGTGTATAACAAACAACAAGAGGAGCAAAAGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37794</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>48450</contig_pos>
        <strand></strand>
        <context>AAAGTGGGCR[G/A]AGCTTGAGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCG</left_flank>
        <right_flank>AGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAAGCAACATATGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCAATAACAAAAACGAGAGCTCATTGAAAATTATTTTTGGGGTTATGATATTTTTATGACAACGTTCAATTCTTTACTGTCTGGATAGGAGCCATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAAGCAACATATGTTTCATATATAGTTTACATGTAATAATCTAAATTGTGTATGTGTATAACAAACAACAAGAGGAGCAAAAGTACGTACTGAGCACATCCATGAATAATGAACTCTTTTGTGGTATGGAAAATGGGTCAACGAGAAAGAAAAGAGGAGGGGGGGGGGAGTGGTCAAATAATAATAATAATAATAATAACAGCAGAATGCCTATAGCCAGCTACTGGGATAGGTAGGTCACTTTGATTGGATTTGAATTTGATTAGATTGCAAAAAAAACATACATAGTGGCCGTTTTTGATTAGATTTAGAGTAGCCGTTTTGATTGGATTTTGAAAAAAGAGTGGCCAGCTTCAAAAAAAAGTAATATTAGCTTAAACTGAACGATCTTTAACGTATAGCTCTAACAAGTTAAAGAATATGTGAAAAGATCAGCACCTCTTGAATTAATGGGAAGAGATTAAA</canonical>
            <polymorphic>GCCAATAACAAAAACGAGAGCTCATTGAAAATTATTTTTGGGGTTATGATATTTTTATGACAACGTTCAATTCTTTACTGTCTGGATAGGAGCCATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGRAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAAGCAACATATGTTTCATATATAGTTTACATGTAATAATCTAAATTGTGTATGTGTATAACAAACAACAAGAGGAGCAAAAGTACGTACTGAGCACATCCATGAATAATGAACTCTTTTGTGGTATGGAAAATGGGTCAACGAGAAAGAAAAGAGGAGGGGGGGGGGAGTGGTCAAATAATAATAATAATAATAATAACAGCAGAATGCCTATAGCCAGCTACTGGGATAGGTAGGTCACTTTGATTGGATTTGAATTTGATTAGATTGCAAAAAAAACATACATAGTGGCCGTTTTTGATTAGATTTAGAGTAGCCGTTTTGATTGGATTTTGAAAAAAGAGTGGCCAGCTTCAAAAAAAAGTAATATTAGCTTAAACTGAACGATCTTTAACGTATAGCTCTAACAAGTTAAAGAATATGTGAAAAGATCAGCACCTCTTGAATTAATGGGAAGAGATTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTCTTTGTTATTCTTTCTCTCA</pcr_primer_p1>
		<pcr_primer_p2>GTACTTTTGCTCCTCTTGTTGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAAGCAACATATGTTTCATATATAGTTTACATGTAATAATCTAAATTGTGTATGTGTATAACAAACAACAAGAGGAGCAAAAGTAC</canonical_amplicon>
		<polymorphic_amplicon>AAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGRAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAAGCAACATATGTTTCATATATAGTTTACATGTAATAATCTAAATTGTGTATGTGTATAACAAACAACAAGAGGAGCAAAAGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37795</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>48489</contig_pos>
        <strand></strand>
        <context>TAACAAGAAA[G/A]CAACATATGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAA</left_flank>
        <right_flank>CAACATATGTTTCATATATAGTTTACATGTAATAATCTAAATTGTGTATG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGGTTATGATATTTTTATGACAACGTTCAATTCTTTACTGTCTGGATAGGAGCCATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAAGCAACATATGTTTCATATATAGTTTACATGTAATAATCTAAATTGTGTATGTGTATAACAAACAACAAGAGGAGCAAAAGTACGTACTGAGCACATCCATGAATAATGAACTCTTTTGTGGTATGGAAAATGGGTCAACGAGAAAGAAAAGAGGAGGGGGGGGGGAGTGGTCAAATAATAATAATAATAATAATAACAGCAGAATGCCTATAGCCAGCTACTGGGATAGGTAGGTCACTTTGATTGGATTTGAATTTGATTAGATTGCAAAAAAAACATACATAGTGGCCGTTTTTGATTAGATTTAGAGTAGCCGTTTTGATTGGATTTTGAAAAAAGAGTGGCCAGCTTCAAAAAAAAGTAATATTAGCTTAAACTGAACGATCTTTAACGTATAGCTCTAACAAGTTAAAGAATATGTGAAAAGATCAGCACCTCTTGAATTAATGGGAAGAGATTAAAAGGAGTCTTTTGACTATAGAAGCCCGCTGAAATTTTTTT</canonical>
            <polymorphic>GGGGTTATGATATTTTTATGACAACGTTCAATTCTTTACTGTCTGGATAGGAGCCATATGCGACATGAAAACAGAAAAAAAACACAGACAGTAAAAGACGGATCGAACGGCTTCCTGTCATTTTCAGCCTCCCAGGAGAAGAAAAGAAGAATTTAAAGATCATTGTTCCAAACAGCACAGACAAAAACACAAACACATTGAATTCTCATAAAAACCGAAGCAAGGATCCAAAAAAACGAAAACGATAACGATGTTTTGTCTGTGTGGGGCACAAATCGAATATGAATGCGTGACTTTCAGTTTGTCTTGGTCGGAGGAAAGAATGTTTCTTTAAAAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAARCAACATATGTTTCATATATAGTTTACATGTAATAATCTAAATTGTGTATGTGTATAACAAACAACAAGAGGAGCAAAAGTACGTACTGAGCACATCCATGAATAATGAACTCTTTTGTGGTATGGAAAATGGGTCAACGAGAAAGAAAAGAGGAGGGGGGGGGGAGTGGTCAAATAATAATAATAATAATAATAACAGCAGAATGCCTATAGCCAGCTACTGGGATAGGTAGGTCACTTTGATTGGATTTGAATTTGATTAGATTGCAAAAAAAACATACATAGTGGCCGTTTTTGATTAGATTTAGAGTAGCCGTTTTGATTGGATTTTGAAAAAAGAGTGGCCAGCTTCAAAAAAAAGTAATATTAGCTTAAACTGAACGATCTTTAACGTATAGCTCTAACAAGTTAAAGAATATGTGAAAAGATCAGCACCTCTTGAATTAATGGGAAGAGATTAAAAGGAGTCTTTTGACTATAGAAGCCCGCTGAAATTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCTTTGTTATTCTTTCTCTCA</pcr_primer_p1>
		<pcr_primer_p2>GTACTTTTGCTCCTCTTGTTGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAAGCAACATATGTTTCATATATAGTTTACATGTAATAATCTAAATTGTGTATGTGTATAACAAACAACAAGAGGAGCAAAAGTAC</canonical_amplicon>
		<polymorphic_amplicon>AAATTCTTTGTTATTCTTTCTCTCAGAGACCCCGATAACTGATGCATATCTTTTTACGTTTTTTTTAATAATAAGTGTCAATTTTTCAATAAGAAGAAAAAAAAGAACTGCAAAGGAAAGTGGGCGGAGCTTGAGCAAGCAGAGGAGAGAGCAAGTAACAAGAAARCAACATATGTTTCATATATAGTTTACATGTAATAATCTAAATTGTGTATGTGTATAACAAACAACAAGAGGAGCAAAAGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37796</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>131913</contig_pos>
        <strand></strand>
        <context>ctttcggtca[G/T]tyttactatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCA</left_flank>
        <right_flank>TTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATTTTTAAAAATGTTATTTTTTGTTCATAAACTTTTCGGCTTCTTTTTGGTGTTTCAAGAAAAAGCAAAAAAAAACGTATTTTTTGAGAAATATATCAACCAGGAAGAAGCCGTGAAAGAGAAAACTTTCAAAGAAATGAATAAGGTTAGGTCATCAATAGAAAAGAAACTCTGAGTTCATCGAAAATTCTGGCGTATAAGGCGTCTAGTTAAAAATAAATCTGTAGCTTTTGGATGTGGGGGGGGGGGGGCAATCGTCGTTGGAAAGCTGTTGATAATCTTTTAAAGCCTCCTTTAAAAGTATAATCGGATTTGATGAAAAAACATAAATGGACAGACCATGGACTTGTTTTCAAGAAGGGAGAGTTATGCGGGAAAGACACATAGAATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGA</canonical>
            <polymorphic>TGATTTTTAAAAATGTTATTTTTTGTTCATAAACTTTTCGGCTTCTTTTTGGTGTTTCAAGAAAAAGCAAAAAAAAACGTATTTTTTGAGAAATATATCAACCAGGAAGAAGCCGTGAAAGAGAAAACTTTCAAAGAAATGAATAAGGTTAGGTCATCAATAGAAAAGAAACTCTGAGTTCATCGAAAATTCTGGCGTATAAGGCGTCTAGTTAAAAATAAATCTGTAGCTTTTGGATGTGGGGGGGGGGGGGCAATCGTCGTTGGAAAGCTGTTGATAATCTTTTAAAGCCTCCTTTAAAAGTATAATCGGATTTGATGAAAAAACATAAATGGACAGACCATGGACTTGTTTTCAAGAAGGGAGAGTTATGCGGGAAAGACACATAGAATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAKTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGGAGGTGGAAAAATCTACT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTCCTCTGTGTTATCAACT</pcr_primer_p2>
		<pcr_amplicon_size>513</pcr_amplicon_size>
		<canonical_amplicon>AGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>AGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAKTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37797</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>131915</contig_pos>
        <strand></strand>
        <context>ttcggtcakt[T/C]ttactatttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGT</left_flank>
        <right_flank>TTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTAAAAATGTTATTTTTTGTTCATAAACTTTTCGGCTTCTTTTTGGTGTTTCAAGAAAAAGCAAAAAAAAACGTATTTTTTGAGAAATATATCAACCAGGAAGAAGCCGTGAAAGAGAAAACTTTCAAAGAAATGAATAAGGTTAGGTCATCAATAGAAAAGAAACTCTGAGTTCATCGAAAATTCTGGCGTATAAGGCGTCTAGTTAAAAATAAATCTGTAGCTTTTGGATGTGGGGGGGGGGGGGCAATCGTCGTTGGAAAGCTGTTGATAATCTTTTAAAGCCTCCTTTAAAAGTATAATCGGATTTGATGAAAAAACATAAATGGACAGACCATGGACTTGTTTTCAAGAAGGGAGAGTTATGCGGGAAAGACACATAGAATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGAAT</canonical>
            <polymorphic>ATTTTTAAAAATGTTATTTTTTGTTCATAAACTTTTCGGCTTCTTTTTGGTGTTTCAAGAAAAAGCAAAAAAAAACGTATTTTTTGAGAAATATATCAACCAGGAAGAAGCCGTGAAAGAGAAAACTTTCAAAGAAATGAATAAGGTTAGGTCATCAATAGAAAAGAAACTCTGAGTTCATCGAAAATTCTGGCGTATAAGGCGTCTAGTTAAAAATAAATCTGTAGCTTTTGGATGTGGGGGGGGGGGGGCAATCGTCGTTGGAAAGCTGTTGATAATCTTTTAAAGCCTCCTTTAAAAGTATAATCGGATTTGATGAAAAAACATAAATGGACAGACCATGGACTTGTTTTCAAGAAGGGAGAGTTATGCGGGAAAGACACATAGAATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTYTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGGAGGTGGAAAAATCTACT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTCCTCTGTGTTATCAACT</pcr_primer_p2>
		<pcr_amplicon_size>513</pcr_amplicon_size>
		<canonical_amplicon>AGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>AGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTYTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37798</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>131944</contig_pos>
        <strand></strand>
        <context>tggagctcaa[T/C]tgtcactttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAA</left_flank>
        <right_flank>TGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTTTTCGGCTTCTTTTTGGTGTTTCAAGAAAAAGCAAAAAAAAACGTATTTTTTGAGAAATATATCAACCAGGAAGAAGCCGTGAAAGAGAAAACTTTCAAAGAAATGAATAAGGTTAGGTCATCAATAGAAAAGAAACTCTGAGTTCATCGAAAATTCTGGCGTATAAGGCGTCTAGTTAAAAATAAATCTGTAGCTTTTGGATGTGGGGGGGGGGGGGCAATCGTCGTTGGAAAGCTGTTGATAATCTTTTAAAGCCTCCTTTAAAAGTATAATCGGATTTGATGAAAAAACATAAATGGACAGACCATGGACTTGTTTTCAAGAAGGGAGAGTTATGCGGGAAAGACACATAGAATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGAATTCAAAACTATATCCAACTTCTATGGACCC</canonical>
            <polymorphic>AACTTTTCGGCTTCTTTTTGGTGTTTCAAGAAAAAGCAAAAAAAAACGTATTTTTTGAGAAATATATCAACCAGGAAGAAGCCGTGAAAGAGAAAACTTTCAAAGAAATGAATAAGGTTAGGTCATCAATAGAAAAGAAACTCTGAGTTCATCGAAAATTCTGGCGTATAAGGCGTCTAGTTAAAAATAAATCTGTAGCTTTTGGATGTGGGGGGGGGGGGGCAATCGTCGTTGGAAAGCTGTTGATAATCTTTTAAAGCCTCCTTTAAAAGTATAATCGGATTTGATGAAAAAACATAAATGGACAGACCATGGACTTGTTTTCAAGAAGGGAGAGTTATGCGGGAAAGACACATAGAATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAAYTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGAATTCAAAACTATATCCAACTTCTATGGACCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>202 156 139 138 102 57 48 39 37 32 23 21 6</canonical_bands>
                <polymorphic_bands>202 187 156 138 102 57 39 37 32 23 21 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGGAGGTGGAAAAATCTACT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTCCTCTGTGTTATCAACT</pcr_primer_p2>
		<pcr_amplicon_size>513</pcr_amplicon_size>
		<canonical_amplicon>AGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>AGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAAYTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37799</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>131957</contig_pos>
        <strand></strand>
        <context>tcacttttcc[G/A]atcattttga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCC</left_flank>
        <right_flank>ATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTTGGTGTTTCAAGAAAAAGCAAAAAAAAACGTATTTTTTGAGAAATATATCAACCAGGAAGAAGCCGTGAAAGAGAAAACTTTCAAAGAAATGAATAAGGTTAGGTCATCAATAGAAAAGAAACTCTGAGTTCATCGAAAATTCTGGCGTATAAGGCGTCTAGTTAAAAATAAATCTGTAGCTTTTGGATGTGGGGGGGGGGGGGCAATCGTCGTTGGAAAGCTGTTGATAATCTTTTAAAGCCTCCTTTAAAAGTATAATCGGATTTGATGAAAAAACATAAATGGACAGACCATGGACTTGTTTTCAAGAAGGGAGAGTTATGCGGGAAAGACACATAGAATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGAATTCAAAACTATATCCAACTTCTATGGACCCACCAGTTTTGATT</canonical>
            <polymorphic>CTTTTTGGTGTTTCAAGAAAAAGCAAAAAAAAACGTATTTTTTGAGAAATATATCAACCAGGAAGAAGCCGTGAAAGAGAAAACTTTCAAAGAAATGAATAAGGTTAGGTCATCAATAGAAAAGAAACTCTGAGTTCATCGAAAATTCTGGCGTATAAGGCGTCTAGTTAAAAATAAATCTGTAGCTTTTGGATGTGGGGGGGGGGGGGCAATCGTCGTTGGAAAGCTGTTGATAATCTTTTAAAGCCTCCTTTAAAAGTATAATCGGATTTGATGAAAAAACATAAATGGACAGACCATGGACTTGTTTTCAAGAAGGGAGAGTTATGCGGGAAAGACACATAGAATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCRATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGAATTCAAAACTATATCCAACTTCTATGGACCCACCAGTTTTGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>499 250 142 109</canonical_bands>
                <polymorphic_bands>749 142 109</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>170 141 136 132 131 100 69 63 34 13 11</canonical_bands>
                <polymorphic_bands>201 170 141 136 131 100 63 34 13 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGGAGGTGGAAAAATCTACT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTCCTCTGTGTTATCAACT</pcr_primer_p2>
		<pcr_amplicon_size>513</pcr_amplicon_size>
		<canonical_amplicon>AGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>AGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCRATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37800</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>131972</contig_pos>
        <strand></strand>
        <context>ttttgaaaat[G/T]ttggagggtg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAAT</left_flank>
        <right_flank>TTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAAAAGCAAAAAAAAACGTATTTTTTGAGAAATATATCAACCAGGAAGAAGCCGTGAAAGAGAAAACTTTCAAAGAAATGAATAAGGTTAGGTCATCAATAGAAAAGAAACTCTGAGTTCATCGAAAATTCTGGCGTATAAGGCGTCTAGTTAAAAATAAATCTGTAGCTTTTGGATGTGGGGGGGGGGGGGCAATCGTCGTTGGAAAGCTGTTGATAATCTTTTAAAGCCTCCTTTAAAAGTATAATCGGATTTGATGAAAAAACATAAATGGACAGACCATGGACTTGTTTTCAAGAAGGGAGAGTTATGCGGGAAAGACACATAGAATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGAATTCAAAACTATATCCAACTTCTATGGACCCACCAGTTTTGATTCTAGCGTCAGAATTG</canonical>
            <polymorphic>AGAAAAAGCAAAAAAAAACGTATTTTTTGAGAAATATATCAACCAGGAAGAAGCCGTGAAAGAGAAAACTTTCAAAGAAATGAATAAGGTTAGGTCATCAATAGAAAAGAAACTCTGAGTTCATCGAAAATTCTGGCGTATAAGGCGTCTAGTTAAAAATAAATCTGTAGCTTTTGGATGTGGGGGGGGGGGGGCAATCGTCGTTGGAAAGCTGTTGATAATCTTTTAAAGCCTCCTTTAAAAGTATAATCGGATTTGATGAAAAAACATAAATGGACAGACCATGGACTTGTTTTCAAGAAGGGAGAGTTATGCGGGAAAGACACATAGAATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATKTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGAATTCAAAACTATATCCAACTTCTATGGACCCACCAGTTTTGATTCTAGCGTCAGAATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGGAGGTGGAAAAATCTACT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTCCTCTGTGTTATCAACT</pcr_primer_p2>
		<pcr_amplicon_size>513</pcr_amplicon_size>
		<canonical_amplicon>AGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>AGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATKTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37801</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>131993</contig_pos>
        <strand></strand>
        <context>aaaatcaaat[T/C]taaattgaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAAT</left_flank>
        <right_flank>TAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTTGAGAAATATATCAACCAGGAAGAAGCCGTGAAAGAGAAAACTTTCAAAGAAATGAATAAGGTTAGGTCATCAATAGAAAAGAAACTCTGAGTTCATCGAAAATTCTGGCGTATAAGGCGTCTAGTTAAAAATAAATCTGTAGCTTTTGGATGTGGGGGGGGGGGGGCAATCGTCGTTGGAAAGCTGTTGATAATCTTTTAAAGCCTCCTTTAAAAGTATAATCGGATTTGATGAAAAAACATAAATGGACAGACCATGGACTTGTTTTCAAGAAGGGAGAGTTATGCGGGAAAGACACATAGAATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGAATTCAAAACTATATCCAACTTCTATGGACCCACCAGTTTTGATTCTAGCGTCAGAATTGAGAAAATGTTATTCAATAAAA</canonical>
            <polymorphic>ATTTTTTGAGAAATATATCAACCAGGAAGAAGCCGTGAAAGAGAAAACTTTCAAAGAAATGAATAAGGTTAGGTCATCAATAGAAAAGAAACTCTGAGTTCATCGAAAATTCTGGCGTATAAGGCGTCTAGTTAAAAATAAATCTGTAGCTTTTGGATGTGGGGGGGGGGGGGCAATCGTCGTTGGAAAGCTGTTGATAATCTTTTAAAGCCTCCTTTAAAAGTATAATCGGATTTGATGAAAAAACATAAATGGACAGACCATGGACTTGTTTTCAAGAAGGGAGAGTTATGCGGGAAAGACACATAGAATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATYTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGAATTCAAAACTATATCCAACTTCTATGGACCCACCAGTTTTGATTCTAGCGTCAGAATTGAGAAAATGTTATTCAATAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>202 187 138 107 102 81 60 57 37 29</canonical_bands>
                <polymorphic_bands>216 202 138 107 102 81 60 57 37</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 283 206 12</canonical_bands>
                <polymorphic_bands>782 206 12</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>283 158 132 130 114 98 73 12</canonical_bands>
                <polymorphic_bands>441 132 130 114 98 73 12</polymorphic_bands>
            </assay>
            <assay>
                <site>ATTTAAAT</site>
                <isoschizomers>
                    <enzyme>SmiI</enzyme>
                    <enzyme>SwaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>202 139 138 107 102 57 55 48 39 37 26 23 21 6</canonical_bands>
                <polymorphic_bands>202 139 138 107 102 57 55 54 39 37 26 23 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGGAGGTGGAAAAATCTACT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTCCTCTGTGTTATCAACT</pcr_primer_p2>
		<pcr_amplicon_size>513</pcr_amplicon_size>
		<canonical_amplicon>AGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>AGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATYTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37802</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>132016</contig_pos>
        <strand></strand>
        <context>tttacgttca[C/T]agaatttctr</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCA</left_flank>
        <right_flank>AGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAAGAAGCCGTGAAAGAGAAAACTTTCAAAGAAATGAATAAGGTTAGGTCATCAATAGAAAAGAAACTCTGAGTTCATCGAAAATTCTGGCGTATAAGGCGTCTAGTTAAAAATAAATCTGTAGCTTTTGGATGTGGGGGGGGGGGGGCAATCGTCGTTGGAAAGCTGTTGATAATCTTTTAAAGCCTCCTTTAAAAGTATAATCGGATTTGATGAAAAAACATAAATGGACAGACCATGGACTTGTTTTCAAGAAGGGAGAGTTATGCGGGAAAGACACATAGAATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGAATTCAAAACTATATCCAACTTCTATGGACCCACCAGTTTTGATTCTAGCGTCAGAATTGAGAAAATGTTATTCAATAAAATATGAAAATGATAGAACTAAATA</canonical>
            <polymorphic>AGGAAGAAGCCGTGAAAGAGAAAACTTTCAAAGAAATGAATAAGGTTAGGTCATCAATAGAAAAGAAACTCTGAGTTCATCGAAAATTCTGGCGTATAAGGCGTCTAGTTAAAAATAAATCTGTAGCTTTTGGATGTGGGGGGGGGGGGGCAATCGTCGTTGGAAAGCTGTTGATAATCTTTTAAAGCCTCCTTTAAAAGTATAATCGGATTTGATGAAAAAACATAAATGGACAGACCATGGACTTGTTTTCAAGAAGGGAGAGTTATGCGGGAAAGACACATAGAATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCAYAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGAATTCAAAACTATATCCAACTTCTATGGACCCACCAGTTTTGATTCTAGCGTCAGAATTGAGAAAATGTTATTCAATAAAATATGAAAATGATAGAACTAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>183 143 124 101 71 60 41 39 35 33 33 32 30 16 14 13 11 10 8 3</canonical_bands>
                <polymorphic_bands>183 143 124 101 72 71 60 41 35 33 32 30 16 14 13 11 10 8 3</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>503 384 107 6</canonical_bands>
                <polymorphic_bands>509 384 107</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGGAGGTGGAAAAATCTACT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTCCTCTGTGTTATCAACT</pcr_primer_p2>
		<pcr_amplicon_size>513</pcr_amplicon_size>
		<canonical_amplicon>AGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>AGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCAYAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37803</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>132026</contig_pos>
        <strand></strand>
        <context>yagaatttct[G/A]aactccttgt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCT</left_flank>
        <right_flank>AACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTGAAAGAGAAAACTTTCAAAGAAATGAATAAGGTTAGGTCATCAATAGAAAAGAAACTCTGAGTTCATCGAAAATTCTGGCGTATAAGGCGTCTAGTTAAAAATAAATCTGTAGCTTTTGGATGTGGGGGGGGGGGGGCAATCGTCGTTGGAAAGCTGTTGATAATCTTTTAAAGCCTCCTTTAAAAGTATAATCGGATTTGATGAAAAAACATAAATGGACAGACCATGGACTTGTTTTCAAGAAGGGAGAGTTATGCGGGAAAGACACATAGAATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGAATTCAAAACTATATCCAACTTCTATGGACCCACCAGTTTTGATTCTAGCGTCAGAATTGAGAAAATGTTATTCAATAAAATATGAAAATGATAGAACTAAATAATAGAAAGAG</canonical>
            <polymorphic>CGTGAAAGAGAAAACTTTCAAAGAAATGAATAAGGTTAGGTCATCAATAGAAAAGAAACTCTGAGTTCATCGAAAATTCTGGCGTATAAGGCGTCTAGTTAAAAATAAATCTGTAGCTTTTGGATGTGGGGGGGGGGGGGCAATCGTCGTTGGAAAGCTGTTGATAATCTTTTAAAGCCTCCTTTAAAAGTATAATCGGATTTGATGAAAAAACATAAATGGACAGACCATGGACTTGTTTTCAAGAAGGGAGAGTTATGCGGGAAAGACACATAGAATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTRAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGAATTCAAAACTATATCCAACTTCTATGGACCCACCAGTTTTGATTCTAGCGTCAGAATTGAGAAAATGTTATTCAATAAAATATGAAAATGATAGAACTAAATAATAGAAAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>170 141 136 132 100 72 69 62 60 34 13 11</canonical_bands>
                <polymorphic_bands>170 141 136 132 103 100 72 62 60 13 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGGAGGTGGAAAAATCTACT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTCCTCTGTGTTATCAACT</pcr_primer_p2>
		<pcr_amplicon_size>513</pcr_amplicon_size>
		<canonical_amplicon>AGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>AGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTRAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37804</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>132082</contig_pos>
        <strand></strand>
        <context>ttttcggctc[G/A]tttgtactga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTC</left_flank>
        <right_flank>TTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTCTGAGTTCATCGAAAATTCTGGCGTATAAGGCGTCTAGTTAAAAATAAATCTGTAGCTTTTGGATGTGGGGGGGGGGGGGCAATCGTCGTTGGAAAGCTGTTGATAATCTTTTAAAGCCTCCTTTAAAAGTATAATCGGATTTGATGAAAAAACATAAATGGACAGACCATGGACTTGTTTTCAAGAAGGGAGAGTTATGCGGGAAAGACACATAGAATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGAATTCAAAACTATATCCAACTTCTATGGACCCACCAGTTTTGATTCTAGCGTCAGAATTGAGAAAATGTTATTCAATAAAATATGAAAATGATAGAACTAAATAATAGAAAGAGCAGAGTTACAGAAAATAATAACAAGAACATCTTTACAAAACAAAATCTAACTTTGT</canonical>
            <polymorphic>AACTCTGAGTTCATCGAAAATTCTGGCGTATAAGGCGTCTAGTTAAAAATAAATCTGTAGCTTTTGGATGTGGGGGGGGGGGGGCAATCGTCGTTGGAAAGCTGTTGATAATCTTTTAAAGCCTCCTTTAAAAGTATAATCGGATTTGATGAAAAAACATAAATGGACAGACCATGGACTTGTTTTCAAGAAGGGAGAGTTATGCGGGAAAGACACATAGAATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCRTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGAATTCAAAACTATATCCAACTTCTATGGACCCACCAGTTTTGATTCTAGCGTCAGAATTGAGAAAATGTTATTCAATAAAATATGAAAATGATAGAACTAAATAATAGAAAGAGCAGAGTTACAGAAAATAATAACAAGAACATCTTTACAAAACAAAATCTAACTTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGGAGGTGGAAAAATCTACT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTCCTCTGTGTTATCAACT</pcr_primer_p2>
		<pcr_amplicon_size>513</pcr_amplicon_size>
		<canonical_amplicon>AGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>AGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCRTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37805</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>132168</contig_pos>
        <strand></strand>
        <context>attcagcaaa[T/C]gcaaagttat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAA</left_flank>
        <right_flank>GCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGTCGTTGGAAAGCTGTTGATAATCTTTTAAAGCCTCCTTTAAAAGTATAATCGGATTTGATGAAAAAACATAAATGGACAGACCATGGACTTGTTTTCAAGAAGGGAGAGTTATGCGGGAAAGACACATAGAATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGAATTCAAAACTATATCCAACTTCTATGGACCCACCAGTTTTGATTCTAGCGTCAGAATTGAGAAAATGTTATTCAATAAAATATGAAAATGATAGAACTAAATAATAGAAAGAGCAGAGTTACAGAAAATAATAACAAGAACATCTTTACAAAACAAAATCTAACTTTGTTAGACCCACCAATCGGATTCTAGAGTCAGAATTCAAAAGATATTATTCAATATTCTGAAAATGGGCTCCCTAATCTTCTCTCCTCT</canonical>
            <polymorphic>ATCGTCGTTGGAAAGCTGTTGATAATCTTTTAAAGCCTCCTTTAAAAGTATAATCGGATTTGATGAAAAAACATAAATGGACAGACCATGGACTTGTTTTCAAGAAGGGAGAGTTATGCGGGAAAGACACATAGAATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAAYGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGAATTCAAAACTATATCCAACTTCTATGGACCCACCAGTTTTGATTCTAGCGTCAGAATTGAGAAAATGTTATTCAATAAAATATGAAAATGATAGAACTAAATAATAGAAAGAGCAGAGTTACAGAAAATAATAACAAGAACATCTTTACAAAACAAAATCTAACTTTGTTAGACCCACCAATCGGATTCTAGAGTCAGAATTCAAAAGATATTATTCAATATTCTGAAAATGGGCTCCCTAATCTTCTCTCCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>501 478 21</canonical_bands>
                <polymorphic_bands>522 478</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGGAGGTGGAAAAATCTACT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTCCTCTGTGTTATCAACT</pcr_primer_p2>
		<pcr_amplicon_size>513</pcr_amplicon_size>
		<canonical_amplicon>AGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>AGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAAYGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37806</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>132236</contig_pos>
        <strand></strand>
        <context>gagctccagg[C/T]ttctaaagat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGG</left_flank>
        <right_flank>TTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACATAAATGGACAGACCATGGACTTGTTTTCAAGAAGGGAGAGTTATGCGGGAAAGACACATAGAATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGAATTCAAAACTATATCCAACTTCTATGGACCCACCAGTTTTGATTCTAGCGTCAGAATTGAGAAAATGTTATTCAATAAAATATGAAAATGATAGAACTAAATAATAGAAAGAGCAGAGTTACAGAAAATAATAACAAGAACATCTTTACAAAACAAAATCTAACTTTGTTAGACCCACCAATCGGATTCTAGAGTCAGAATTCAAAAGATATTATTCAATATTCTGAAAATGGGCTCCCTAATCTTCTCTCCTCTGATTTGAAGACAATACAATATGGTGAATAAGTGATATCAATGTACTAGGTACATTTTGGAATGAGATA</canonical>
            <polymorphic>AAACATAAATGGACAGACCATGGACTTGTTTTCAAGAAGGGAGAGTTATGCGGGAAAGACACATAGAATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGYTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGAATTCAAAACTATATCCAACTTCTATGGACCCACCAGTTTTGATTCTAGCGTCAGAATTGAGAAAATGTTATTCAATAAAATATGAAAATGATAGAACTAAATAATAGAAAGAGCAGAGTTACAGAAAATAATAACAAGAACATCTTTACAAAACAAAATCTAACTTTGTTAGACCCACCAATCGGATTCTAGAGTCAGAATTCAAAAGATATTATTCAATATTCTGAAAATGGGCTCCCTAATCTTCTCTCCTCTGATTTGAAGACAATACAATATGGTGAATAAGTGATATCAATGTACTAGGTACATTTTGGAATGAGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>412 202 140 114 89 31 7 5</canonical_bands>
                <polymorphic_bands>419 202 140 114 89 31 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGGAGGTGGAAAAATCTACT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTCCTCTGTGTTATCAACT</pcr_primer_p2>
		<pcr_amplicon_size>513</pcr_amplicon_size>
		<canonical_amplicon>AGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>AGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGYTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37807</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>132260</contig_pos>
        <strand></strand>
        <context>taaaattacc[G/A]aaaatatrtt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACC</left_flank>
        <right_flank>AAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGTTTTCAAGAAGGGAGAGTTATGCGGGAAAGACACATAGAATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGAATTCAAAACTATATCCAACTTCTATGGACCCACCAGTTTTGATTCTAGCGTCAGAATTGAGAAAATGTTATTCAATAAAATATGAAAATGATAGAACTAAATAATAGAAAGAGCAGAGTTACAGAAAATAATAACAAGAACATCTTTACAAAACAAAATCTAACTTTGTTAGACCCACCAATCGGATTCTAGAGTCAGAATTCAAAAGATATTATTCAATATTCTGAAAATGGGCTCCCTAATCTTCTCTCCTCTGATTTGAAGACAATACAATATGGTGAATAAGTGATATCAATGTACTAGGTACATTTTGGAATGAGATATTCCAAATAAGGATCCAAATTAGA</canonical>
            <polymorphic>CTTGTTTTCAAGAAGGGAGAGTTATGCGGGAAAGACACATAGAATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCRAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGAATTCAAAACTATATCCAACTTCTATGGACCCACCAGTTTTGATTCTAGCGTCAGAATTGAGAAAATGTTATTCAATAAAATATGAAAATGATAGAACTAAATAATAGAAAGAGCAGAGTTACAGAAAATAATAACAAGAACATCTTTACAAAACAAAATCTAACTTTGTTAGACCCACCAATCGGATTCTAGAGTCAGAATTCAAAAGATATTATTCAATATTCTGAAAATGGGCTCCCTAATCTTCTCTCCTCTGATTTGAAGACAATACAATATGGTGAATAAGTGATATCAATGTACTAGGTACATTTTGGAATGAGATATTCCAAATAAGGATCCAAATTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGGAGGTGGAAAAATCTACT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTCCTCTGTGTTATCAACT</pcr_primer_p2>
		<pcr_amplicon_size>513</pcr_amplicon_size>
		<canonical_amplicon>AGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>AGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCRAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37808</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>132268</contig_pos>
        <strand></strand>
        <context>ccraaaatat[A/G]ttggaaattt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATAT</left_flank>
        <right_flank>TTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGAAGGGAGAGTTATGCGGGAAAGACACATAGAATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGAATTCAAAACTATATCCAACTTCTATGGACCCACCAGTTTTGATTCTAGCGTCAGAATTGAGAAAATGTTATTCAATAAAATATGAAAATGATAGAACTAAATAATAGAAAGAGCAGAGTTACAGAAAATAATAACAAGAACATCTTTACAAAACAAAATCTAACTTTGTTAGACCCACCAATCGGATTCTAGAGTCAGAATTCAAAAGATATTATTCAATATTCTGAAAATGGGCTCCCTAATCTTCTCTCCTCTGATTTGAAGACAATACAATATGGTGAATAAGTGATATCAATGTACTAGGTACATTTTGGAATGAGATATTCCAAATAAGGATCCAAATTAGAACCGGGAA</canonical>
            <polymorphic>CAAGAAGGGAGAGTTATGCGGGAAAGACACATAGAATTCACTCATCAGTGGATTCAGATATAAAAAAATGAGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATRTTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAAGGATATATTGATTAACATCTTTTGAATTCTGATGCTAGAATCAGAGTGGTGAAAAAACACGAATTCAAAACTATATCCAACTTCTATGGACCCACCAGTTTTGATTCTAGCGTCAGAATTGAGAAAATGTTATTCAATAAAATATGAAAATGATAGAACTAAATAATAGAAAGAGCAGAGTTACAGAAAATAATAACAAGAACATCTTTACAAAACAAAATCTAACTTTGTTAGACCCACCAATCGGATTCTAGAGTCAGAATTCAAAAGATATTATTCAATATTCTGAAAATGGGCTCCCTAATCTTCTCTCCTCTGATTTGAAGACAATACAATATGGTGAATAAGTGATATCAATGTACTAGGTACATTTTGGAATGAGATATTCCAAATAAGGATCCAAATTAGAACCGGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGGAGGTGGAAAAATCTACT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTCCTCTGTGTTATCAACT</pcr_primer_p2>
		<pcr_amplicon_size>513</pcr_amplicon_size>
		<canonical_amplicon>AGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATATTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>AGAGGAGGTGGAAAAATCTACTGTACCGGGCAATAAGATATACAAAAACGATATTTTCAGTTGACTTTCGGTCAGTTTTACTATTTTCGAAAAACTGGAGCTCAATTGTCACTTTTCCGATCATTTTGAAAATGTTGGAGGGTGAAAATCAAATTTAAATTGAAAAGTTTACGTTCACAGAATTTCTGAACTCCTTGTTTTCCAGTTATTTGCGTGATTCTGAAAGACACGGTTTTTCGGCTCGTTTGTACTGAAAACGTGAAAAAGAGAGCTGTCTCTCAAAAATCGGTAAATAGATAAAAGTTGGAGTTTTTAAGAAATTCAGCAAATGCAAAGTTATCAATCTACCCTGCAAAGTTTCTGAAAATGATCGGAAATTTGACAGCTGAGCTCCAGGCTTCTAAAGATGGTTAAAATTACCGAAAATATRTTGGAAATTTCGTGTTAGAAAGTCCTGGTGATGTTCTGTAAATCCCTGATCAGTTCTATTAGTTGATAACACAGAGGAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37809</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>139249</contig_pos>
        <strand>+</strand>
        <context>TTTRRGRAAA[A/G]TACTTCGAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGAAAA</left_flank>
        <right_flank>TACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAACTGTGTCTTGTCAGTGAATAAATTACAGACAAAAAATCGTGTCCCGGCCCGGGCCCACGCGGCAAGGGCCAGCCACTTTATGACTTTTAACTTTGTTCGCAAGCAAGGTACAGTTCTCCAAATAGTATCATTTTGTAGTACTCGTCGAGCTCTATTATATTTGATTTAGTTGGTCTAAAAATTTTGATTCTGAAAGAAATAATGGCAATGCCCGCGAAGGCCCGGATTACAAGTATCTGTGAATGCAAATTTCTCCATCTAAGTCTGTTTTACACTCTCCAAAATTTTGTTACCGATCGGAAGCTTGACAACCGAGCTTCAGATTCTTGAAAATGGTAATAATGGTCTAATATCAACTGAGAGTTACGTTTCTATTCATCTTATTGATCGGTACAGTAGACACGCAGGTTCGAAAAAGTTGAAATAACAAAATCAAATTGGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGAAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTTCTTTGTTGTCTACTGGGACCAAAAAGGAAGAGGGTTTACATACAAAGTTATCAGAGGCCCCGAGTCTAAACGTACATAATTACACTCTTCTAGTCGTTTTCCTTTTTTTTCCTTTTTCTTTTCTCGCTTTGTTGTTTTTTTATTCTCTTTTTAGCTCTCTTCAGAGTTCTATGAATCGTGAGAATTTCTAAAGAGAAAATTTTCTTTTTCTTGAACACATGAACTCAAATGGGAAAACATGGAAATGAGAAATGAAGAAGAAAAAAAACTAATATTTGTATTCTGAATCCGTTACGTTCTCTGGAAAAGG</canonical>
            <polymorphic>AGAACTGTGTCTTGTCAGTGAATAAATTACAGACAAAAAATCGTGTCCCGGCCCGGGCCCACGCGGCAAGGGCCAGCCACTTTATGACTTTTAACTTTGTTCGCAAGCAAGGTACAGTTCTCCAAATAGTATCATTTTGTAGTACTCGTCGAGCTCTATTATATTTGATTTAGTTGGTCTAAAAATTTTGATTCTGAAAGAAATAATGGCAATGCCCGCGAAGGCCCGGATTACAAGTATCTGTGAATGCAAATTTCTCCATCTAAGTCTGTTTTACACTCTCCAAAATTTTGTTACCGATCGGAAGCTTGACAACCGAGCTTCAGATTCTTGAAAATGGTAATAATGGTCTAATATCAACTGAGAGTTACGTTTCTATTCATCTTATTGATCGGTACAGTAGACACGCAGGTTCGAAAAAGTTGAAATAACAAAATCAAATTGGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGAAAARTACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTTCTTTGTTGTCTACTGGGACCAAAAAGGAAGAGGGTTTACATACAAAGTTATCAGAGGCCCCGAGTCTAAACGTACATAATTACACTCTTCTAGTCGTTTTCCTTTTTTTTCCTTTTTCTTTTCTCGCTTTGTTGTTTTTTTATTCTCTTTTTAGCTCTCTTCAGAGTTCTATGAATCGTGAGAATTTCTAAAGAGAAAATTTTCTTTTTCTTGAACACATGAACTCAAATGGGAAAACATGGAAATGAGAAATGAAGAAGAAAAAAAACTAATATTTGTATTCTGAATCCGTTACGTTCTCTGGAAAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATCTCATAGCCTTAGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAACCCAAAAGCGATTATCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGAAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTT</canonical_amplicon>
		<polymorphic_amplicon>GGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGAAAARTACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37810</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>139313</contig_pos>
        <strand>+</strand>
        <context>TTCTCAGAAT[C/T]AAAAAAACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAAT</left_flank>
        <right_flank>AAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCAAGGGCCAGCCACTTTATGACTTTTAACTTTGTTCGCAAGCAAGGTACAGTTCTCCAAATAGTATCATTTTGTAGTACTCGTCGAGCTCTATTATATTTGATTTAGTTGGTCTAAAAATTTTGATTCTGAAAGAAATAATGGCAATGCCCGCGAAGGCCCGGATTACAAGTATCTGTGAATGCAAATTTCTCCATCTAAGTCTGTTTTACACTCTCCAAAATTTTGTTACCGATCGGAAGCTTGACAACCGAGCTTCAGATTCTTGAAAATGGTAATAATGGTCTAATATCAACTGAGAGTTACGTTTCTATTCATCTTATTGATCGGTACAGTAGACACGCAGGTTCGAAAAAGTTGAAATAACAAAATCAAATTGGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGAAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTTCTTTGTTGTCTACTGGGACCAAAAAGGAAGAGGGTTTACATACAAAGTTATCAGAGGCCCCGAGTCTAAACGTACATAATTACACTCTTCTAGTCGTTTTCCTTTTTTTTCCTTTTTCTTTTCTCGCTTTGTTGTTTTTTTATTCTCTTTTTAGCTCTCTTCAGAGTTCTATGAATCGTGAGAATTTCTAAAGAGAAAATTTTCTTTTTCTTGAACACATGAACTCAAATGGGAAAACATGGAAATGAGAAATGAAGAAGAAAAAAAACTAATATTTGTATTCTGAATCCGTTACGTTCTCTGGAAAAGGGTAAAAACACAATTTGTGTGTTTGTTTCATATAATTTTTTCGCATTTTCCAGAACCAATCTAAC</canonical>
            <polymorphic>GGCAAGGGCCAGCCACTTTATGACTTTTAACTTTGTTCGCAAGCAAGGTACAGTTCTCCAAATAGTATCATTTTGTAGTACTCGTCGAGCTCTATTATATTTGATTTAGTTGGTCTAAAAATTTTGATTCTGAAAGAAATAATGGCAATGCCCGCGAAGGCCCGGATTACAAGTATCTGTGAATGCAAATTTCTCCATCTAAGTCTGTTTTACACTCTCCAAAATTTTGTTACCGATCGGAAGCTTGACAACCGAGCTTCAGATTCTTGAAAATGGTAATAATGGTCTAATATCAACTGAGAGTTACGTTTCTATTCATCTTATTGATCGGTACAGTAGACACGCAGGTTCGAAAAAGTTGAAATAACAAAATCAAATTGGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGAAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATYAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTTCTTTGTTGTCTACTGGGACCAAAAAGGAAGAGGGTTTACATACAAAGTTATCAGAGGCCCCGAGTCTAAACGTACATAATTACACTCTTCTAGTCGTTTTCCTTTTTTTTCCTTTTTCTTTTCTCGCTTTGTTGTTTTTTTATTCTCTTTTTAGCTCTCTTCAGAGTTCTATGAATCGTGAGAATTTCTAAAGAGAAAATTTTCTTTTTCTTGAACACATGAACTCAAATGGGAAAACATGGAAATGAGAAATGAAGAAGAAAAAAAACTAATATTTGTATTCTGAATCCGTTACGTTCTCTGGAAAAGGGTAAAAACACAATTTGTGTGTTTGTTTCATATAATTTTTTCGCATTTTCCAGAACCAATCTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATCTCATAGCCTTAGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAACCCAAAAGCGATTATCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGAAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTT</canonical_amplicon>
		<polymorphic_amplicon>GGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGAAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATYAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37811</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>139665</contig_pos>
        <strand>+</strand>
        <context>CACATGAACT[C/G]RAATGGGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCGTGAGAATTTCTAAAGAGAAAATTTTCTTTTTCTTGAACACATGAACT</left_flank>
        <right_flank>AAATGGGAAAACATGGAAATGAGAAATGAAGAAGAAAAAAAACTAATATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAGTTGAAATAACAAAATCAAATTGGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGAAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTTCTTTGTTGTCTACTGGGACCAAAAAGGAAGAGGGTTTACATACAAAGTTATCAGAGGCCCCGAGTCTAAACGTACATAATTACACTCTTCTAGTCGTTTTCCTTTTTTTTCCTTTTTCTTTTCTCGCTTTGTTGTTTTTTTATTCTCTTTTTAGCTCTCTTCAGAGTTCTATGAATCGTGAGAATTTCTAAAGAGAAAATTTTCTTTTTCTTGAACACATGAACTCAAATGGGAAAACATGGAAATGAGAAATGAAGAAGAAAAAAAACTAATATTTGTATTCTGAATCCGTTACGTTCTCTGGAAAAGGGTAAAAACACAATTTGTGTGTTTGTTTCATATAATTTTTTCGCATTTTCCAGAACCAATCTAACAAATTGAAAATACCGAAATTGTTATGTTAGATGTATGACAACAACAGTGTCTGTCACCTAATTCCCACGAGAACGCTTTTATTTTTGATATGTGTTTTTGCACAACTTCCGCGTTCAAAATCCCAACTCGACAATTTTTGGAATGTATATGACAAACTTCTTCCGGCTCCACTTTTTTGGTCCAAATGTCATAGATCTGTTATTTGAAACAATGCGAGGAGCTTCCAATGTTATCTTGCGACATGATTTATTTTGTTATTGCAGTGTAAGAATTTTCTTTTCTTCTCTTCCAGAGTATCCTGACATTTAAAATATTGAAGCACTGGTAGAATGATAAGAGAAGTGTGCGAAT</canonical>
            <polymorphic>AAAAAGTTGAAATAACAAAATCAAATTGGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGAAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTTCTTTGTTGTCTACTGGGACCAAAAAGGAAGAGGGTTTACATACAAAGTTATCAGAGGCCCCGAGTCTAAACGTACATAATTACACTCTTCTAGTCGTTTTCCTTTTTTTTCCTTTTTCTTTTCTCGCTTTGTTGTTTTTTTATTCTCTTTTTAGCTCTCTTCAGAGTTCTATGAATCGTGAGAATTTCTAAAGAGAAAATTTTCTTTTTCTTGAACACATGAACTSAAATGGGAAAACATGGAAATGAGAAATGAAGAAGAAAAAAAACTAATATTTGTATTCTGAATCCGTTACGTTCTCTGGAAAAGGGTAAAAACACAATTTGTGTGTTTGTTTCATATAATTTTTTCGCATTTTCCAGAACCAATCTAACAAATTGAAAATACCGAAATTGTTATGTTAGATGTATGACAACAACAGTGTCTGTCACCTAATTCCCACGAGAACGCTTTTATTTTTGATATGTGTTTTTGCACAACTTCCGCGTTCAAAATCCCAACTCGACAATTTTTGGAATGTATATGACAAACTTCTTCCGGCTCCACTTTTTTGGTCCAAATGTCATAGATCTGTTATTTGAAACAATGCGAGGAGCTTCCAATGTTATCTTGCGACATGATTTATTTTGTTATTGCAGTGTAAGAATTTTCTTTTCTTCTCTTCCAGAGTATCCTGACATTTAAAATATTGAAGCACTGGTAGAATGATAAGAGAAGTGTGCGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTTCAGAGTTCTATGAATCGT</pcr_primer_p1>
		<pcr_primer_p2>AACATAACAATTTCGGTATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTCTTCAGAGTTCTATGAATCGTGAGAATTTCTAAAGAGAAAATTTTCTTTTTCTTGAACACATGAACTCAAATGGGAAAACATGGAAATGAGAAATGAAGAAGAAAAAAAACTAATATTTGTATTCTGAATCCGTTACGTTCTCTGGAAAAGGGTAAAAACACAATTTGTGTGTTTGTTTCATATAATTTTTTCGCATTTTCCAGAACCAATCTAACAAATTGAAAATACCGAAATTGTTATGTT</canonical_amplicon>
		<polymorphic_amplicon>CTCTTCAGAGTTCTATGAATCGTGAGAATTTCTAAAGAGAAAATTTTCTTTTTCTTGAACACATGAACTSAAATGGGAAAACATGGAAATGAGAAATGAAGAAGAAAAAAAACTAATATTTGTATTCTGAATCCGTTACGTTCTCTGGAAAAGGGTAAAAACACAATTTGTGTGTTTGTTTCATATAATTTTTTCGCATTTTCCAGAACCAATCTAACAAATTGAAAATACCGAAATTGTTATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37812</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>139666</contig_pos>
        <strand>+</strand>
        <context>ACATGAACTS[A/G]AATGGGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTGAGAATTTCTAAAGAGAAAATTTTCTTTTTCTTGAACACATGAACTC</left_flank>
        <right_flank>AATGGGAAAACATGGAAATGAGAAATGAAGAAGAAAAAAAACTAATATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGTTGAAATAACAAAATCAAATTGGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGAAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTTCTTTGTTGTCTACTGGGACCAAAAAGGAAGAGGGTTTACATACAAAGTTATCAGAGGCCCCGAGTCTAAACGTACATAATTACACTCTTCTAGTCGTTTTCCTTTTTTTTCCTTTTTCTTTTCTCGCTTTGTTGTTTTTTTATTCTCTTTTTAGCTCTCTTCAGAGTTCTATGAATCGTGAGAATTTCTAAAGAGAAAATTTTCTTTTTCTTGAACACATGAACTCAAATGGGAAAACATGGAAATGAGAAATGAAGAAGAAAAAAAACTAATATTTGTATTCTGAATCCGTTACGTTCTCTGGAAAAGGGTAAAAACACAATTTGTGTGTTTGTTTCATATAATTTTTTCGCATTTTCCAGAACCAATCTAACAAATTGAAAATACCGAAATTGTTATGTTAGATGTATGACAACAACAGTGTCTGTCACCTAATTCCCACGAGAACGCTTTTATTTTTGATATGTGTTTTTGCACAACTTCCGCGTTCAAAATCCCAACTCGACAATTTTTGGAATGTATATGACAAACTTCTTCCGGCTCCACTTTTTTGGTCCAAATGTCATAGATCTGTTATTTGAAACAATGCGAGGAGCTTCCAATGTTATCTTGCGACATGATTTATTTTGTTATTGCAGTGTAAGAATTTTCTTTTCTTCTCTTCCAGAGTATCCTGACATTTAAAATATTGAAGCACTGGTAGAATGATAAGAGAAGTGTGCGAATT</canonical>
            <polymorphic>AAAAGTTGAAATAACAAAATCAAATTGGATCTCATAGCCTTAGAAAAATGCAAAAAAACGAACACAAAAAAATTTAAGAAAAATACTTCGAAGGTCACCCAAAAAATTGAACAATGACAGAAATAAATAAGTGAACTTCTCAGAATAAAAAAAACAACAGGAAGTCTTAAAGCACACGTACTAGGACCTAAAACAAAAAAAGTACGTAAAAACAAAGGTGCGCTTTGAAAAAGTGGTCTTGGTGGGGGATTTGAGATAATCGCTTTTGGGTTTCTTTGTTGTCTACTGGGACCAAAAAGGAAGAGGGTTTACATACAAAGTTATCAGAGGCCCCGAGTCTAAACGTACATAATTACACTCTTCTAGTCGTTTTCCTTTTTTTTCCTTTTTCTTTTCTCGCTTTGTTGTTTTTTTATTCTCTTTTTAGCTCTCTTCAGAGTTCTATGAATCGTGAGAATTTCTAAAGAGAAAATTTTCTTTTTCTTGAACACATGAACTCRAATGGGAAAACATGGAAATGAGAAATGAAGAAGAAAAAAAACTAATATTTGTATTCTGAATCCGTTACGTTCTCTGGAAAAGGGTAAAAACACAATTTGTGTGTTTGTTTCATATAATTTTTTCGCATTTTCCAGAACCAATCTAACAAATTGAAAATACCGAAATTGTTATGTTAGATGTATGACAACAACAGTGTCTGTCACCTAATTCCCACGAGAACGCTTTTATTTTTGATATGTGTTTTTGCACAACTTCCGCGTTCAAAATCCCAACTCGACAATTTTTGGAATGTATATGACAAACTTCTTCCGGCTCCACTTTTTTGGTCCAAATGTCATAGATCTGTTATTTGAAACAATGCGAGGAGCTTCCAATGTTATCTTGCGACATGATTTATTTTGTTATTGCAGTGTAAGAATTTTCTTTTCTTCTCTTCCAGAGTATCCTGACATTTAAAATATTGAAGCACTGGTAGAATGATAAGAGAAGTGTGCGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTTCAGAGTTCTATGAATCGT</pcr_primer_p1>
		<pcr_primer_p2>AACATAACAATTTCGGTATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTCTTCAGAGTTCTATGAATCGTGAGAATTTCTAAAGAGAAAATTTTCTTTTTCTTGAACACATGAACTCAAATGGGAAAACATGGAAATGAGAAATGAAGAAGAAAAAAAACTAATATTTGTATTCTGAATCCGTTACGTTCTCTGGAAAAGGGTAAAAACACAATTTGTGTGTTTGTTTCATATAATTTTTTCGCATTTTCCAGAACCAATCTAACAAATTGAAAATACCGAAATTGTTATGTT</canonical_amplicon>
		<polymorphic_amplicon>CTCTTCAGAGTTCTATGAATCGTGAGAATTTCTAAAGAGAAAATTTTCTTTTTCTTGAACACATGAACTCRAATGGGAAAACATGGAAATGAGAAATGAAGAAGAAAAAAAACTAATATTTGTATTCTGAATCCGTTACGTTCTCTGGAAAAGGGTAAAAACACAATTTGTGTGTTTGTTTCATATAATTTTTTCGCATTTTCCAGAACCAATCTAACAAATTGAAAATACCGAAATTGTTATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37813</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>142824</contig_pos>
        <strand>+</strand>
        <context>GATCATGTCT[C/T]CTTATCACAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTTTTCTCAATTCAAATAAACACATGCACAGTCTTGTGATCATGTCT</left_flank>
        <right_flank>CTTATCACATTTTTGAAGAAAGAGAGAGAGGCATACACGGAAATGCAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAGTGAGTTGAGATCTTGTCATCTAAAAGGAACCAAAAAATAAGACAACACATTTTAGGGACTTCGTCATCAACTTGCTCTCTGGAGGAAACATTGCTCTTCACATGAGCTTCAGATGGGAGAAGACCAAGTCGATCGTATTGAACGCCAAGATTGACAACGCTTGGGGAAGCGAGGTACTTTAATTTTGGGAATTATGGAATCAAAAAGGCATTAAATTCTATTTCAGATCAGCCACTCCAACCCACTCCACCACGACCAGGCCTTTGACCTTCAAATCCGCGTCTACCCAGGATACTTCCACGTGACCACTAACGGAGTTCTCCTCGGTGACTTCCCACATCGTCTTCCATTCGAGAGCATCCAAGCTATTGCGTTGGAGGGAAATGTCCATATCAACAACATTCAATTTTCGCAATTCCACTAAACTTTTCAATTCCGCTTTATTTTTTTTTCTCAATTCAAATAAACACATGCACAGTCTTGTGATCATGTCTCCTTATCACATTTTTGAAGAAAGAGAGAGAGGCATACACGGAAATGCAAAATGTAGGAAATTTTATTAGTTTGACAACAACTCTAAAACAATGAATTCAAGCATAAAGAGCTTAAAAAATTATACAAATCGCTGAGAAACTGACTGAGACTACAAGTACGAGATTAGTGAATCGAGTGGGTAAAGCAAGATGTGGGGGGGGGGGGGGGTAAATGACTGAGGTGCGTTTTACAAATTAAAAATTATTCAGGAAAAAATACAAGAATTTAAATAATAGGTAGTATGTTCAATATGAACAAAATGTTGGATTTTAGCAAATAAATTATAAATCGGTCTGAGAAAGTCTTTGAACAGAGTTGTTGTGTGCTGGAACTCGATGAGGGAAGGTGGACTGTAAGATATTGTTTTCGAATGTTGAATATCGATTTTTCAAAAAATTAACATTCAGAACCTTTCACAGGTATACTCCTTAGAACTCATATCTATCTTTTTTGTGATTTGA</canonical>
            <polymorphic>ACAAGTGAGTTGAGATCTTGTCATCTAAAAGGAACCAAAAAATAAGACAACACATTTTAGGGACTTCGTCATCAACTTGCTCTCTGGAGGAAACATTGCTCTTCACATGAGCTTCAGATGGGAGAAGACCAAGTCGATCGTATTGAACGCCAAGATTGACAACGCTTGGGGAAGCGAGGTACTTTAATTTTGGGAATTATGGAATCAAAAAGGCATTAAATTCTATTTCAGATCAGCCACTCCAACCCACTCCACCACGACCAGGCCTTTGACCTTCAAATCCGCGTCTACCCAGGATACTTCCACGTGACCACTAACGGAGTTCTCCTCGGTGACTTCCCACATCGTCTTCCATTCGAGAGCATCCAAGCTATTGCGTTGGAGGGAAATGTCCATATCAACAACATTCAATTTTCGCAATTCCACTAAACTTTTCAATTCCGCTTTATTTTTTTTTCTCAATTCAAATAAACACATGCACAGTCTTGTGATCATGTCTYCTTATCACATTTTTGAAGAAAGAGAGAGAGGCATACACGGAAATGCAAAATGTAGGAAATTTTATTAGTTTGACAACAACTCTAAAACAATGAATTCAAGCATAAAGAGCTTAAAAAATTATACAAATCGCTGAGAAACTGACTGAGACTACAAGTACGAGATTAGTGAATCGAGTGGGTAAAGCAAGATGTGGGGGGGGGGGGGGGTAAATGACTGAGGTGCGTTTTACAAATTAAAAATTATTCAGGAAAAAATACAAGAATTTAAATAATAGGTAGTATGTTCAATATGAACAAAATGTTGGATTTTAGCAAATAAATTATAAATCGGTCTGAGAAAGTCTTTGAACAGAGTTGTTGTGTGCTGGAACTCGATGAGGGAAGGTGGACTGTAAGATATTGTTTTCGAATGTTGAATATCGATTTTTCAAAAAATTAACATTCAGAACCTTTCACAGGTATACTCCTTAGAACTCATATCTATCTTTTTTGTGATTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGTCCATATCAACAACATTC</pcr_primer_p1>
		<pcr_primer_p2>TCTCAGCGATTTGTATAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATGTCCATATCAACAACATTCAATTTTCGCAATTCCACTAAACTTTTCAATTCCGCTTTATTTTTTTTTCTCAATTCAAATAAACACATGCACAGTCTTGTGATCATGTCTCCTTATCACATTTTTGAAGAAAGAGAGAGAGGCATACACGGAAATGCAAAATGTAGGAAATTTTATTAGTTTGACAACAACTCTAAAACAATGAATTCAAGCATAAAGAGCTTAAAAAATTATACAAATCGCTGAGA</canonical_amplicon>
		<polymorphic_amplicon>AAATGTCCATATCAACAACATTCAATTTTCGCAATTCCACTAAACTTTTCAATTCCGCTTTATTTTTTTTTCTCAATTCAAATAAACACATGCACAGTCTTGTGATCATGTCTYCTTATCACATTTTTGAAGAAAGAGAGAGAGGCATACACGGAAATGCAAAATGTAGGAAATTTTATTAGTTTGACAACAACTCTAAAACAATGAATTCAAGCATAAAGAGCTTAAAAAATTATACAAATCGCTGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37814</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>143017</contig_pos>
        <strand>+</strand>
        <context>AGCAAGATGT[A/T]GGGGGGGGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGAGACTACAAGTACGAGATTAGTGAATCGAGTGGGTAAAGCAAGATGT</left_flank>
        <right_flank>GGGGGGGGGGGGGGTAAATGACTGAGGTGCGTTTTACAAATTAAAAATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTATGGAATCAAAAAGGCATTAAATTCTATTTCAGATCAGCCACTCCAACCCACTCCACCACGACCAGGCCTTTGACCTTCAAATCCGCGTCTACCCAGGATACTTCCACGTGACCACTAACGGAGTTCTCCTCGGTGACTTCCCACATCGTCTTCCATTCGAGAGCATCCAAGCTATTGCGTTGGAGGGAAATGTCCATATCAACAACATTCAATTTTCGCAATTCCACTAAACTTTTCAATTCCGCTTTATTTTTTTTTCTCAATTCAAATAAACACATGCACAGTCTTGTGATCATGTCTCCTTATCACATTTTTGAAGAAAGAGAGAGAGGCATACACGGAAATGCAAAATGTAGGAAATTTTATTAGTTTGACAACAACTCTAAAACAATGAATTCAAGCATAAAGAGCTTAAAAAATTATACAAATCGCTGAGAAACTGACTGAGACTACAAGTACGAGATTAGTGAATCGAGTGGGTAAAGCAAGATGTGGGGGGGGGGGGGGGTAAATGACTGAGGTGCGTTTTACAAATTAAAAATTATTCAGGAAAAAATACAAGAATTTAAATAATAGGTAGTATGTTCAATATGAACAAAATGTTGGATTTTAGCAAATAAATTATAAATCGGTCTGAGAAAGTCTTTGAACAGAGTTGTTGTGTGCTGGAACTCGATGAGGGAAGGTGGACTGTAAGATATTGTTTTCGAATGTTGAATATCGATTTTTCAAAAAATTAACATTCAGAACCTTTCACAGGTATACTCCTTAGAACTCATATCTATCTTTTTTGTGATTTGAGGAAATCATCAGGCACCAATGAAGCAAGAGTCGGGCAAAAACCTTCTTAACGCTTGTAGCTTGTTTTGTAAGCGGAAAAATAACACTAGGTATGCTCTAGGCACATTTTGGGGATATCTAGGACATATTCATTCGGCCTAGCTTTGACCTACAGTACTGGTCGATAAAATGTGCTTTTTCAGTTCATTTTCCG</canonical>
            <polymorphic>GAATTATGGAATCAAAAAGGCATTAAATTCTATTTCAGATCAGCCACTCCAACCCACTCCACCACGACCAGGCCTTTGACCTTCAAATCCGCGTCTACCCAGGATACTTCCACGTGACCACTAACGGAGTTCTCCTCGGTGACTTCCCACATCGTCTTCCATTCGAGAGCATCCAAGCTATTGCGTTGGAGGGAAATGTCCATATCAACAACATTCAATTTTCGCAATTCCACTAAACTTTTCAATTCCGCTTTATTTTTTTTTCTCAATTCAAATAAACACATGCACAGTCTTGTGATCATGTCTCCTTATCACATTTTTGAAGAAAGAGAGAGAGGCATACACGGAAATGCAAAATGTAGGAAATTTTATTAGTTTGACAACAACTCTAAAACAATGAATTCAAGCATAAAGAGCTTAAAAAATTATACAAATCGCTGAGAAACTGACTGAGACTACAAGTACGAGATTAGTGAATCGAGTGGGTAAAGCAAGATGTWGGGGGGGGGGGGGGTAAATGACTGAGGTGCGTTTTACAAATTAAAAATTATTCAGGAAAAAATACAAGAATTTAAATAATAGGTAGTATGTTCAATATGAACAAAATGTTGGATTTTAGCAAATAAATTATAAATCGGTCTGAGAAAGTCTTTGAACAGAGTTGTTGTGTGCTGGAACTCGATGAGGGAAGGTGGACTGTAAGATATTGTTTTCGAATGTTGAATATCGATTTTTCAAAAAATTAACATTCAGAACCTTTCACAGGTATACTCCTTAGAACTCATATCTATCTTTTTTGTGATTTGAGGAAATCATCAGGCACCAATGAAGCAAGAGTCGGGCAAAAACCTTCTTAACGCTTGTAGCTTGTTTTGTAAGCGGAAAAATAACACTAGGTATGCTCTAGGCACATTTTGGGGATATCTAGGACATATTCATTCGGCCTAGCTTTGACCTACAGTACTGGTCGATAAAATGTGCTTTTTCAGTTCATTTTCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>140 131 83 70 70 68 49 48 46 39 30 29 23 21 21 20 18 17 16 10 10 9 8 6 5 4 4 3 2</canonical_bands>
                <polymorphic_bands>140 131 83 70 70 68 49 48 46 45 39 30 23 21 21 20 18 17 10 10 9 8 6 5 4 4 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGACAACAACTCTAAAACAATGA</pcr_primer_p1>
		<pcr_primer_p2>TTTATTTGCTAAAATCCAACATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGACAACAACTCTAAAACAATGAATTCAAGCATAAAGAGCTTAAAAAATTATACAAATCGCTGAGAAACTGACTGAGACTACAAGTACGAGATTAGTGAATCGAGTGGGTAAAGCAAGATGTGGGGGGGGGGGGGGGTAAATGACTGAGGTGCGTTTTACAAATTAAAAATTATTCAGGAAAAAATACAAGAATTTAAATAATAGGTAGTATGTTCAATATGAACAAAATGTTGGATTTTAGCAAATAAA</canonical_amplicon>
		<polymorphic_amplicon>TGACAACAACTCTAAAACAATGAATTCAAGCATAAAGAGCTTAAAAAATTATACAAATCGCTGAGAAACTGACTGAGACTACAAGTACGAGATTAGTGAATCGAGTGGGTAAAGCAAGATGTWGGGGGGGGGGGGGGTAAATGACTGAGGTGCGTTTTACAAATTAAAAATTATTCAGGAAAAAATACAAGAATTTAAATAATAGGTAGTATGTTCAATATGAACAAAATGTTGGATTTTAGCAAATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37815</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>143055</contig_pos>
        <strand></strand>
        <context>TGCGTTTTAC[A/G]AATTWAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGCAAGATGTGGGGGGGGGGGGGGGTAAATGACTGAGGTGCGTTTTAC</left_flank>
        <right_flank>AATTAAAAATTATTCAGGAAAAAATACAAGAATTTAAATAATAGGTAGTA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAGCCACTCCAACCCACTCCACCACGACCAGGCCTTTGACCTTCAAATCCGCGTCTACCCAGGATACTTCCACGTGACCACTAACGGAGTTCTCCTCGGTGACTTCCCACATCGTCTTCCATTCGAGAGCATCCAAGCTATTGCGTTGGAGGGAAATGTCCATATCAACAACATTCAATTTTCGCAATTCCACTAAACTTTTCAATTCCGCTTTATTTTTTTTTCTCAATTCAAATAAACACATGCACAGTCTTGTGATCATGTCTCCTTATCACATTTTTGAAGAAAGAGAGAGAGGCATACACGGAAATGCAAAATGTAGGAAATTTTATTAGTTTGACAACAACTCTAAAACAATGAATTCAAGCATAAAGAGCTTAAAAAATTATACAAATCGCTGAGAAACTGACTGAGACTACAAGTACGAGATTAGTGAATCGAGTGGGTAAAGCAAGATGTGGGGGGGGGGGGGGGTAAATGACTGAGGTGCGTTTTACAAATTAAAAATTATTCAGGAAAAAATACAAGAATTTAAATAATAGGTAGTATGTTCAATATGAACAAAATGTTGGATTTTAGCAAATAAATTATAAATCGGTCTGAGAAAGTCTTTGAACAGAGTTGTTGTGTGCTGGAACTCGATGAGGGAAGGTGGACTGTAAGATATTGTTTTCGAATGTTGAATATCGATTTTTCAAAAAATTAACATTCAGAACCTTTCACAGGTATACTCCTTAGAACTCATATCTATCTTTTTTGTGATTTGAGGAAATCATCAGGCACCAATGAAGCAAGAGTCGGGCAAAAACCTTCTTAACGCTTGTAGCTTGTTTTGTAAGCGGAAAAATAACACTAGGTATGCTCTAGGCACATTTTGGGGATATCTAGGACATATTCATTCGGCCTAGCTTTGACCTACAGTACTGGTCGATAAAATGTGCTTTTTCAGTTCATTTTCCGCCATTTTTACCATTTTCAGAAGTCTGGAGCTTGGCTAT</canonical>
            <polymorphic>ATCAGCCACTCCAACCCACTCCACCACGACCAGGCCTTTGACCTTCAAATCCGCGTCTACCCAGGATACTTCCACGTGACCACTAACGGAGTTCTCCTCGGTGACTTCCCACATCGTCTTCCATTCGAGAGCATCCAAGCTATTGCGTTGGAGGGAAATGTCCATATCAACAACATTCAATTTTCGCAATTCCACTAAACTTTTCAATTCCGCTTTATTTTTTTTTCTCAATTCAAATAAACACATGCACAGTCTTGTGATCATGTCTCCTTATCACATTTTTGAAGAAAGAGAGAGAGGCATACACGGAAATGCAAAATGTAGGAAATTTTATTAGTTTGACAACAACTCTAAAACAATGAATTCAAGCATAAAGAGCTTAAAAAATTATACAAATCGCTGAGAAACTGACTGAGACTACAAGTACGAGATTAGTGAATCGAGTGGGTAAAGCAAGATGTGGGGGGGGGGGGGGGTAAATGACTGAGGTGCGTTTTACRAATTAAAAATTATTCAGGAAAAAATACAAGAATTTAAATAATAGGTAGTATGTTCAATATGAACAAAATGTTGGATTTTAGCAAATAAATTATAAATCGGTCTGAGAAAGTCTTTGAACAGAGTTGTTGTGTGCTGGAACTCGATGAGGGAAGGTGGACTGTAAGATATTGTTTTCGAATGTTGAATATCGATTTTTCAAAAAATTAACATTCAGAACCTTTCACAGGTATACTCCTTAGAACTCATATCTATCTTTTTTGTGATTTGAGGAAATCATCAGGCACCAATGAAGCAAGAGTCGGGCAAAAACCTTCTTAACGCTTGTAGCTTGTTTTGTAAGCGGAAAAATAACACTAGGTATGCTCTAGGCACATTTTGGGGATATCTAGGACATATTCATTCGGCCTAGCTTTGACCTACAGTACTGGTCGATAAAATGTGCTTTTTCAGTTCATTTTCCGCCATTTTTACCATTTTCAGAAGTCTGGAGCTTGGCTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACAACAACTCTAAAACAATGA</pcr_primer_p1>
		<pcr_primer_p2>TTTATTTGCTAAAATCCAACATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGACAACAACTCTAAAACAATGAATTCAAGCATAAAGAGCTTAAAAAATTATACAAATCGCTGAGAAACTGACTGAGACTACAAGTACGAGATTAGTGAATCGAGTGGGTAAAGCAAGATGTGGGGGGGGGGGGGGGTAAATGACTGAGGTGCGTTTTACAAATTAAAAATTATTCAGGAAAAAATACAAGAATTTAAATAATAGGTAGTATGTTCAATATGAACAAAATGTTGGATTTTAGCAAATAAA</canonical_amplicon>
		<polymorphic_amplicon>TGACAACAACTCTAAAACAATGAATTCAAGCATAAAGAGCTTAAAAAATTATACAAATCGCTGAGAAACTGACTGAGACTACAAGTACGAGATTAGTGAATCGAGTGGGTAAAGCAAGATGTGGGGGGGGGGGGGGGTAAATGACTGAGGTGCGTTTTACRAATTAAAAATTATTCAGGAAAAAATACAAGAATTTAAATAATAGGTAGTATGTTCAATATGAACAAAATGTTGGATTTTAGCAAATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37816</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>143060</contig_pos>
        <strand></strand>
        <context>TTTACRAATT[A/T]AAAATTATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGATGTGGGGGGGGGGGGGGGTAAATGACTGAGGTGCGTTTTACAAATT</left_flank>
        <right_flank>AAAATTATTCAGGAAAAAATACAAGAATTTAAATAATAGGTAGTATGTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCACTCCAACCCACTCCACCACGACCAGGCCTTTGACCTTCAAATCCGCGTCTACCCAGGATACTTCCACGTGACCACTAACGGAGTTCTCCTCGGTGACTTCCCACATCGTCTTCCATTCGAGAGCATCCAAGCTATTGCGTTGGAGGGAAATGTCCATATCAACAACATTCAATTTTCGCAATTCCACTAAACTTTTCAATTCCGCTTTATTTTTTTTTCTCAATTCAAATAAACACATGCACAGTCTTGTGATCATGTCTCCTTATCACATTTTTGAAGAAAGAGAGAGAGGCATACACGGAAATGCAAAATGTAGGAAATTTTATTAGTTTGACAACAACTCTAAAACAATGAATTCAAGCATAAAGAGCTTAAAAAATTATACAAATCGCTGAGAAACTGACTGAGACTACAAGTACGAGATTAGTGAATCGAGTGGGTAAAGCAAGATGTGGGGGGGGGGGGGGGTAAATGACTGAGGTGCGTTTTACAAATTAAAAATTATTCAGGAAAAAATACAAGAATTTAAATAATAGGTAGTATGTTCAATATGAACAAAATGTTGGATTTTAGCAAATAAATTATAAATCGGTCTGAGAAAGTCTTTGAACAGAGTTGTTGTGTGCTGGAACTCGATGAGGGAAGGTGGACTGTAAGATATTGTTTTCGAATGTTGAATATCGATTTTTCAAAAAATTAACATTCAGAACCTTTCACAGGTATACTCCTTAGAACTCATATCTATCTTTTTTGTGATTTGAGGAAATCATCAGGCACCAATGAAGCAAGAGTCGGGCAAAAACCTTCTTAACGCTTGTAGCTTGTTTTGTAAGCGGAAAAATAACACTAGGTATGCTCTAGGCACATTTTGGGGATATCTAGGACATATTCATTCGGCCTAGCTTTGACCTACAGTACTGGTCGATAAAATGTGCTTTTTCAGTTCATTTTCCGCCATTTTTACCATTTTCAGAAGTCTGGAGCTTGGCTATTAAAT</canonical>
            <polymorphic>CCACTCCAACCCACTCCACCACGACCAGGCCTTTGACCTTCAAATCCGCGTCTACCCAGGATACTTCCACGTGACCACTAACGGAGTTCTCCTCGGTGACTTCCCACATCGTCTTCCATTCGAGAGCATCCAAGCTATTGCGTTGGAGGGAAATGTCCATATCAACAACATTCAATTTTCGCAATTCCACTAAACTTTTCAATTCCGCTTTATTTTTTTTTCTCAATTCAAATAAACACATGCACAGTCTTGTGATCATGTCTCCTTATCACATTTTTGAAGAAAGAGAGAGAGGCATACACGGAAATGCAAAATGTAGGAAATTTTATTAGTTTGACAACAACTCTAAAACAATGAATTCAAGCATAAAGAGCTTAAAAAATTATACAAATCGCTGAGAAACTGACTGAGACTACAAGTACGAGATTAGTGAATCGAGTGGGTAAAGCAAGATGTGGGGGGGGGGGGGGGTAAATGACTGAGGTGCGTTTTACAAATTWAAAATTATTCAGGAAAAAATACAAGAATTTAAATAATAGGTAGTATGTTCAATATGAACAAAATGTTGGATTTTAGCAAATAAATTATAAATCGGTCTGAGAAAGTCTTTGAACAGAGTTGTTGTGTGCTGGAACTCGATGAGGGAAGGTGGACTGTAAGATATTGTTTTCGAATGTTGAATATCGATTTTTCAAAAAATTAACATTCAGAACCTTTCACAGGTATACTCCTTAGAACTCATATCTATCTTTTTTGTGATTTGAGGAAATCATCAGGCACCAATGAAGCAAGAGTCGGGCAAAAACCTTCTTAACGCTTGTAGCTTGTTTTGTAAGCGGAAAAATAACACTAGGTATGCTCTAGGCACATTTTGGGGATATCTAGGACATATTCATTCGGCCTAGCTTTGACCTACAGTACTGGTCGATAAAATGTGCTTTTTCAGTTCATTTTCCGCCATTTTTACCATTTTCAGAAGTCTGGAGCTTGGCTATTAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>375 184 171 123 111 31 5</canonical_bands>
                <polymorphic_bands>375 184 171 154 111 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGACAACAACTCTAAAACAATGA</pcr_primer_p1>
		<pcr_primer_p2>TTTATTTGCTAAAATCCAACATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGACAACAACTCTAAAACAATGAATTCAAGCATAAAGAGCTTAAAAAATTATACAAATCGCTGAGAAACTGACTGAGACTACAAGTACGAGATTAGTGAATCGAGTGGGTAAAGCAAGATGTGGGGGGGGGGGGGGGTAAATGACTGAGGTGCGTTTTACAAATTAAAAATTATTCAGGAAAAAATACAAGAATTTAAATAATAGGTAGTATGTTCAATATGAACAAAATGTTGGATTTTAGCAAATAAA</canonical_amplicon>
		<polymorphic_amplicon>TGACAACAACTCTAAAACAATGAATTCAAGCATAAAGAGCTTAAAAAATTATACAAATCGCTGAGAAACTGACTGAGACTACAAGTACGAGATTAGTGAATCGAGTGGGTAAAGCAAGATGTGGGGGGGGGGGGGGGTAAATGACTGAGGTGCGTTTTACAAATTWAAAATTATTCAGGAAAAAATACAAGAATTTAAATAATAGGTAGTATGTTCAATATGAACAAAATGTTGGATTTTAGCAAATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37817</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>173857</contig_pos>
        <strand>+</strand>
        <context>GCAAGATGTT[C/G]TTTGCGGCGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTTGTCAATTTGCACTTTTCTCCCCCTAGAGTGCAGTTTTGCAAGATGTT</left_flank>
        <right_flank>TTTGCGGCGAACGCTCTTCGAGTGAAGACCCCCCTCATAAAAAGCTCGTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCATATATCTGATGTCACGTGACGATTCGATTGGAAAAAAAAACAACAAACCCATAAACTAAACCTGTTGATCTTCACTGATTACCCTGCTACAACCTTGAAATACCCTTTTTCCCAAATAAACACCGCCGAAAATCCAAACATGCAAAGCAATAATTCACTTCCCAAGGCCGACACACGTTAAAAACTCACTTTATTTTCTTCGCGATCATTTTAGGATGATAATGATGTCAAGGAGGGATGAATATGAAGAAAAAAGATTTACGACTTGTATTAAAACAGTTTTTATTACTATTTCCCTATTGTCACCATCCTTTTATAAGGAAAATGAGTTCTGTTGGGAAAAAATTGGAAAAAAATCTCAGTCTGCAAATTATGGCTTTTTTCAAATTGCCCTAATCCACCATATGTTTTCCAATAAAAGTGCATTTTGAATATTCTTGTTTACTTGTCAATTTGCACTTTTCTCCCCCTAGAGTGCAGTTTTGCAAGATGTTCTTTGCGGCGAACGCTCTTCGAGTGAAGACCCCCCTCATAAAAAGCTCGTCCCCCTTTTACGTTACCAGGGCAACGTAAGGCGCGCGTGCAACTCGTATTGAATTTTTCCTCTTTTTCCTACTAGCCTTACTACAAAATGGCTTACTTATTTGGACTCGGTGATGGTATTCTGATTGCTTTGGGGATTATCCTGGTGGCAGTGTCGCTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATTAGGAATTTTTATTGCTATGAATCTCCTTCGACGGTTGACAACAAATTTGAAGCGCACATTTTTGTTCAGGTTCTTTTTGTGAATAATTGCGGAATTTGTTTAGAAATTGATCTTGAAAGAGTTTA</canonical>
            <polymorphic>AACCATATATCTGATGTCACGTGACGATTCGATTGGAAAAAAAAACAACAAACCCATAAACTAAACCTGTTGATCTTCACTGATTACCCTGCTACAACCTTGAAATACCCTTTTTCCCAAATAAACACCGCCGAAAATCCAAACATGCAAAGCAATAATTCACTTCCCAAGGCCGACACACGTTAAAAACTCACTTTATTTTCTTCGCGATCATTTTAGGATGATAATGATGTCAAGGAGGGATGAATATGAAGAAAAAAGATTTACGACTTGTATTAAAACAGTTTTTATTACTATTTCCCTATTGTCACCATCCTTTTATAAGGAAAATGAGTTCTGTTGGGAAAAAATTGGAAAAAAATCTCAGTCTGCAAATTATGGCTTTTTTCAAATTGCCCTAATCCACCATATGTTTTCCAATAAAAGTGCATTTTGAATATTCTTGTTTACTTGTCAATTTGCACTTTTCTCCCCCTAGAGTGCAGTTTTGCAAGATGTTSTTTGCGGCGAACGCTCTTCGAGTGAAGACCCCCCTCATAAAAAGCTCGTCCCCCTTTTACGTTACCAGGGCAACGTAAGGCGCGCGTGCAACTCGTATTGAATTTTTCCTCTTTTTCCTACTAGCCTTACTACAAAATGGCTTACTTATTTGGACTCGGTGATGGTATTCTGATTGCTTTGGGGATTATCCTGGTGGCAGTGTCGCTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATTAGGAATTTTTATTGCTATGAATCTCCTTCGACGGTTGACAACAAATTTGAAGCGCACATTTTTGTTCAGGTTCTTTTTGTGAATAATTGCGGAATTTGTTTAGAAATTGATCTTGAAAGAGTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCATATGTTTTCCAATAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CCAAATAAGTAAGCCATTTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACCATATGTTTTCCAATAAAAGTGCATTTTGAATATTCTTGTTTACTTGTCAATTTGCACTTTTCTCCCCCTAGAGTGCAGTTTTGCAAGATGTTCTTTGCGGCGAACGCTCTTCGAGTGAAGACCCCCCTCATAAAAAGCTCGTCCCCCTTTTACGTTACCAGGGCAACGTAAGGCGCGCGTGCAACTCGTATTGAATTTTTCCTCTTTTTCCTACTAGCCTTACTACAAAATGGCTTACTTATTTGG</canonical_amplicon>
		<polymorphic_amplicon>CACCATATGTTTTCCAATAAAAGTGCATTTTGAATATTCTTGTTTACTTGTCAATTTGCACTTTTCTCCCCCTAGAGTGCAGTTTTGCAAGATGTTSTTTGCGGCGAACGCTCTTCGAGTGAAGACCCCCCTCATAAAAAGCTCGTCCCCCTTTTACGTTACCAGGGCAACGTAAGGCGCGCGTGCAACTCGTATTGAATTTTTCCTCTTTTTCCTACTAGCCTTACTACAAAATGGCTTACTTATTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37818</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>173874</contig_pos>
        <strand>+</strand>
        <context>GCGAACGCTC[A/T]TCGAGTGAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCTCCCCCTAGAGTGCAGTTTTGCAAGATGTTCTTTGCGGCGAACGCTC</left_flank>
        <right_flank>TCGAGTGAAGACCCCCCTCATAAAAAGCTCGTCCCCCTTTTACGTTACCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACGTGACGATTCGATTGGAAAAAAAAACAACAAACCCATAAACTAAACCTGTTGATCTTCACTGATTACCCTGCTACAACCTTGAAATACCCTTTTTCCCAAATAAACACCGCCGAAAATCCAAACATGCAAAGCAATAATTCACTTCCCAAGGCCGACACACGTTAAAAACTCACTTTATTTTCTTCGCGATCATTTTAGGATGATAATGATGTCAAGGAGGGATGAATATGAAGAAAAAAGATTTACGACTTGTATTAAAACAGTTTTTATTACTATTTCCCTATTGTCACCATCCTTTTATAAGGAAAATGAGTTCTGTTGGGAAAAAATTGGAAAAAAATCTCAGTCTGCAAATTATGGCTTTTTTCAAATTGCCCTAATCCACCATATGTTTTCCAATAAAAGTGCATTTTGAATATTCTTGTTTACTTGTCAATTTGCACTTTTCTCCCCCTAGAGTGCAGTTTTGCAAGATGTTCTTTGCGGCGAACGCTCTTCGAGTGAAGACCCCCCTCATAAAAAGCTCGTCCCCCTTTTACGTTACCAGGGCAACGTAAGGCGCGCGTGCAACTCGTATTGAATTTTTCCTCTTTTTCCTACTAGCCTTACTACAAAATGGCTTACTTATTTGGACTCGGTGATGGTATTCTGATTGCTTTGGGGATTATCCTGGTGGCAGTGTCGCTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATTAGGAATTTTTATTGCTATGAATCTCCTTCGACGGTTGACAACAAATTTGAAGCGCACATTTTTGTTCAGGTTCTTTTTGTGAATAATTGCGGAATTTGTTTAGAAATTGATCTTGAAAGAGTTTATTAATATTGTCAAAGTG</canonical>
            <polymorphic>CACGTGACGATTCGATTGGAAAAAAAAACAACAAACCCATAAACTAAACCTGTTGATCTTCACTGATTACCCTGCTACAACCTTGAAATACCCTTTTTCCCAAATAAACACCGCCGAAAATCCAAACATGCAAAGCAATAATTCACTTCCCAAGGCCGACACACGTTAAAAACTCACTTTATTTTCTTCGCGATCATTTTAGGATGATAATGATGTCAAGGAGGGATGAATATGAAGAAAAAAGATTTACGACTTGTATTAAAACAGTTTTTATTACTATTTCCCTATTGTCACCATCCTTTTATAAGGAAAATGAGTTCTGTTGGGAAAAAATTGGAAAAAAATCTCAGTCTGCAAATTATGGCTTTTTTCAAATTGCCCTAATCCACCATATGTTTTCCAATAAAAGTGCATTTTGAATATTCTTGTTTACTTGTCAATTTGCACTTTTCTCCCCCTAGAGTGCAGTTTTGCAAGATGTTCTTTGCGGCGAACGCTCWTCGAGTGAAGACCCCCCTCATAAAAAGCTCGTCCCCCTTTTACGTTACCAGGGCAACGTAAGGCGCGCGTGCAACTCGTATTGAATTTTTCCTCTTTTTCCTACTAGCCTTACTACAAAATGGCTTACTTATTTGGACTCGGTGATGGTATTCTGATTGCTTTGGGGATTATCCTGGTGGCAGTGTCGCTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATTAGGAATTTTTATTGCTATGAATCTCCTTCGACGGTTGACAACAAATTTGAAGCGCACATTTTTGTTCAGGTTCTTTTTGTGAATAATTGCGGAATTTGTTTAGAAATTGATCTTGAAAGAGTTTATTAATATTGTCAAAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCATATGTTTTCCAATAAAAG</pcr_primer_p1>
		<pcr_primer_p2>CCAAATAAGTAAGCCATTTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACCATATGTTTTCCAATAAAAGTGCATTTTGAATATTCTTGTTTACTTGTCAATTTGCACTTTTCTCCCCCTAGAGTGCAGTTTTGCAAGATGTTCTTTGCGGCGAACGCTCTTCGAGTGAAGACCCCCCTCATAAAAAGCTCGTCCCCCTTTTACGTTACCAGGGCAACGTAAGGCGCGCGTGCAACTCGTATTGAATTTTTCCTCTTTTTCCTACTAGCCTTACTACAAAATGGCTTACTTATTTGG</canonical_amplicon>
		<polymorphic_amplicon>CACCATATGTTTTCCAATAAAAGTGCATTTTGAATATTCTTGTTTACTTGTCAATTTGCACTTTTCTCCCCCTAGAGTGCAGTTTTGCAAGATGTTCTTTGCGGCGAACGCTCWTCGAGTGAAGACCCCCCTCATAAAAAGCTCGTCCCCCTTTTACGTTACCAGGGCAACGTAAGGCGCGCGTGCAACTCGTATTGAATTTTTCCTCTTTTTCCTACTAGCCTTACTACAAAATGGCTTACTTATTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37819</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>173969</contig_pos>
        <strand>+</strand>
        <context>ATTTTTCCTC[C/T]TTTTCCTACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTACCAGGGCAACGTAAGGCGCGCGTGCAACTCGTATTGAATTTTTCCTC</left_flank>
        <right_flank>TTTTCCTACTAGCCTTACTACAAAATGGCTTACTTATTTGGACTCGGTGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCCAAATAAACACCGCCGAAAATCCAAACATGCAAAGCAATAATTCACTTCCCAAGGCCGACACACGTTAAAAACTCACTTTATTTTCTTCGCGATCATTTTAGGATGATAATGATGTCAAGGAGGGATGAATATGAAGAAAAAAGATTTACGACTTGTATTAAAACAGTTTTTATTACTATTTCCCTATTGTCACCATCCTTTTATAAGGAAAATGAGTTCTGTTGGGAAAAAATTGGAAAAAAATCTCAGTCTGCAAATTATGGCTTTTTTCAAATTGCCCTAATCCACCATATGTTTTCCAATAAAAGTGCATTTTGAATATTCTTGTTTACTTGTCAATTTGCACTTTTCTCCCCCTAGAGTGCAGTTTTGCAAGATGTTCTTTGCGGCGAACGCTCTTCGAGTGAAGACCCCCCTCATAAAAAGCTCGTCCCCCTTTTACGTTACCAGGGCAACGTAAGGCGCGCGTGCAACTCGTATTGAATTTTTCCTCTTTTTCCTACTAGCCTTACTACAAAATGGCTTACTTATTTGGACTCGGTGATGGTATTCTGATTGCTTTGGGGATTATCCTGGTGGCAGTGTCGCTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATTAGGAATTTTTATTGCTATGAATCTCCTTCGACGGTTGACAACAAATTTGAAGCGCACATTTTTGTTCAGGTTCTTTTTGTGAATAATTGCGGAATTTGTTTAGAAATTGATCTTGAAAGAGTTTATTAATATTGTCAAAGTGCGAAAATATTATTTAAAGGAGCATAATTTGTCCAGAAGCAAAAATGTCTTTAGCCTAAAAGTTCCGACTTTGAAGTTCTCAAATTTGCTGTTAAT</canonical>
            <polymorphic>TTTCCCAAATAAACACCGCCGAAAATCCAAACATGCAAAGCAATAATTCACTTCCCAAGGCCGACACACGTTAAAAACTCACTTTATTTTCTTCGCGATCATTTTAGGATGATAATGATGTCAAGGAGGGATGAATATGAAGAAAAAAGATTTACGACTTGTATTAAAACAGTTTTTATTACTATTTCCCTATTGTCACCATCCTTTTATAAGGAAAATGAGTTCTGTTGGGAAAAAATTGGAAAAAAATCTCAGTCTGCAAATTATGGCTTTTTTCAAATTGCCCTAATCCACCATATGTTTTCCAATAAAAGTGCATTTTGAATATTCTTGTTTACTTGTCAATTTGCACTTTTCTCCCCCTAGAGTGCAGTTTTGCAAGATGTTCTTTGCGGCGAACGCTCTTCGAGTGAAGACCCCCCTCATAAAAAGCTCGTCCCCCTTTTACGTTACCAGGGCAACGTAAGGCGCGCGTGCAACTCGTATTGAATTTTTCCTCYTTTTCCTACTAGCCTTACTACAAAATGGCTTACTTATTTGGACTCGGTGATGGTATTCTGATTGCTTTGGGGATTATCCTGGTGGCAGTGTCGCTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATTAGGAATTTTTATTGCTATGAATCTCCTTCGACGGTTGACAACAAATTTGAAGCGCACATTTTTGTTCAGGTTCTTTTTGTGAATAATTGCGGAATTTGTTTAGAAATTGATCTTGAAAGAGTTTATTAATATTGTCAAAGTGCGAAAATATTATTTAAAGGAGCATAATTTGTCCAGAAGCAAAAATGTCTTTAGCCTAAAAGTTCCGACTTTGAAGTTCTCAAATTTGCTGTTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGTGCATTTTGAATATTCTTG</pcr_primer_p1>
		<pcr_primer_p2>CAGAATACCATCACCGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGTGCATTTTGAATATTCTTGTTTACTTGTCAATTTGCACTTTTCTCCCCCTAGAGTGCAGTTTTGCAAGATGTTCTTTGCGGCGAACGCTCTTCGAGTGAAGACCCCCCTCATAAAAAGCTCGTCCCCCTTTTACGTTACCAGGGCAACGTAAGGCGCGCGTGCAACTCGTATTGAATTTTTCCTCTTTTTCCTACTAGCCTTACTACAAAATGGCTTACTTATTTGGACTCGGTGATGGTATTCTG</canonical_amplicon>
		<polymorphic_amplicon>AAAGTGCATTTTGAATATTCTTGTTTACTTGTCAATTTGCACTTTTCTCCCCCTAGAGTGCAGTTTTGCAAGATGTTCTTTGCGGCGAACGCTCTTCGAGTGAAGACCCCCCTCATAAAAAGCTCGTCCCCCTTTTACGTTACCAGGGCAACGTAAGGCGCGCGTGCAACTCGTATTGAATTTTTCCTCYTTTTCCTACTAGCCTTACTACAAAATGGCTTACTTATTTGGACTCGGTGATGGTATTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37820</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>174086</contig_pos>
        <strand>+</strand>
        <context>ACAGACGATC[A/G]AAAGAATTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGGGGATTATCCTGGTGGCAGTGTCGCTGTGTATTGTGAACAGACGATC</left_flank>
        <right_flank>AAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTG</right_flank>
        <qual_score>145</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTCAAGGAGGGATGAATATGAAGAAAAAAGATTTACGACTTGTATTAAAACAGTTTTTATTACTATTTCCCTATTGTCACCATCCTTTTATAAGGAAAATGAGTTCTGTTGGGAAAAAATTGGAAAAAAATCTCAGTCTGCAAATTATGGCTTTTTTCAAATTGCCCTAATCCACCATATGTTTTCCAATAAAAGTGCATTTTGAATATTCTTGTTTACTTGTCAATTTGCACTTTTCTCCCCCTAGAGTGCAGTTTTGCAAGATGTTCTTTGCGGCGAACGCTCTTCGAGTGAAGACCCCCCTCATAAAAAGCTCGTCCCCCTTTTACGTTACCAGGGCAACGTAAGGCGCGCGTGCAACTCGTATTGAATTTTTCCTCTTTTTCCTACTAGCCTTACTACAAAATGGCTTACTTATTTGGACTCGGTGATGGTATTCTGATTGCTTTGGGGATTATCCTGGTGGCAGTGTCGCTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATTAGGAATTTTTATTGCTATGAATCTCCTTCGACGGTTGACAACAAATTTGAAGCGCACATTTTTGTTCAGGTTCTTTTTGTGAATAATTGCGGAATTTGTTTAGAAATTGATCTTGAAAGAGTTTATTAATATTGTCAAAGTGCGAAAATATTATTTAAAGGAGCATAATTTGTCCAGAAGCAAAAATGTCTTTAGCCTAAAAGTTCCGACTTTGAAGTTCTCAAATTTGCTGTTAATTGTTATTTTTAGATTATTTTTCTTGATGTTACAAGCAAAAATTTAACGAAACACAGAAAACCACCCAAAAACTATCGAAATTTTTGAAAACCGAGTAAATTGGCTAAAATAATTGTT</canonical>
            <polymorphic>ATGTCAAGGAGGGATGAATATGAAGAAAAAAGATTTACGACTTGTATTAAAACAGTTTTTATTACTATTTCCCTATTGTCACCATCCTTTTATAAGGAAAATGAGTTCTGTTGGGAAAAAATTGGAAAAAAATCTCAGTCTGCAAATTATGGCTTTTTTCAAATTGCCCTAATCCACCATATGTTTTCCAATAAAAGTGCATTTTGAATATTCTTGTTTACTTGTCAATTTGCACTTTTCTCCCCCTAGAGTGCAGTTTTGCAAGATGTTCTTTGCGGCGAACGCTCTTCGAGTGAAGACCCCCCTCATAAAAAGCTCGTCCCCCTTTTACGTTACCAGGGCAACGTAAGGCGCGCGTGCAACTCGTATTGAATTTTTCCTCTTTTTCCTACTAGCCTTACTACAAAATGGCTTACTTATTTGGACTCGGTGATGGTATTCTGATTGCTTTGGGGATTATCCTGGTGGCAGTGTCGCTGTGTATTGTGAACAGACGATCRAAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATTAGGAATTTTTATTGCTATGAATCTCCTTCGACGGTTGACAACAAATTTGAAGCGCACATTTTTGTTCAGGTTCTTTTTGTGAATAATTGCGGAATTTGTTTAGAAATTGATCTTGAAAGAGTTTATTAATATTGTCAAAGTGCGAAAATATTATTTAAAGGAGCATAATTTGTCCAGAAGCAAAAATGTCTTTAGCCTAAAAGTTCCGACTTTGAAGTTCTCAAATTTGCTGTTAATTGTTATTTTTAGATTATTTTTCTTGATGTTACAAGCAAAAATTTAACGAAACACAGAAAACCACCCAAAAACTATCGAAATTTTTGAAAACCGAGTAAATTGGCTAAAATAATTGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGRYCG</site>
                <isoschizomers>
                    <enzyme>BsaOI</enzyme>
                    <enzyme>Bsh1285I</enzyme>
                    <enzyme>BsiEI</enzyme>
                    <enzyme>BstMCI</enzyme>
                    <enzyme>McrI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CGATCG</site>
                <isoschizomers>
                    <enzyme>BspCI</enzyme>
                    <enzyme>Ple19I</enzyme>
                    <enzyme>PvuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>290 284 209 176 41</canonical_bands>
                <polymorphic_bands>385 290 284 41</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGCCTTACTACAAAATGGCTTA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCTCCACTAAATCACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TAGCCTTACTACAAAATGGCTTACTTATTTGGACTCGGTGATGGTATTCTGATTGCTTTGGGGATTATCCTGGTGGCAGTGTCGCTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGATTTAGTGGAGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TAGCCTTACTACAAAATGGCTTACTTATTTGGACTCGGTGATGGTATTCTGATTGCTTTGGGGATTATCCTGGTGGCAGTGTCGCTGTGTATTGTGAACAGACGATCRAAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGATTTAGTGGAGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37821</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>174109</contig_pos>
        <strand>+</strand>
        <context>GTATAATTAC[G/T]TTTTGTGTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTCGCTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTAC</left_flank>
        <right_flank>TTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACA</right_flank>
        <qual_score>146</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAAAAAGATTTACGACTTGTATTAAAACAGTTTTTATTACTATTTCCCTATTGTCACCATCCTTTTATAAGGAAAATGAGTTCTGTTGGGAAAAAATTGGAAAAAAATCTCAGTCTGCAAATTATGGCTTTTTTCAAATTGCCCTAATCCACCATATGTTTTCCAATAAAAGTGCATTTTGAATATTCTTGTTTACTTGTCAATTTGCACTTTTCTCCCCCTAGAGTGCAGTTTTGCAAGATGTTCTTTGCGGCGAACGCTCTTCGAGTGAAGACCCCCCTCATAAAAAGCTCGTCCCCCTTTTACGTTACCAGGGCAACGTAAGGCGCGCGTGCAACTCGTATTGAATTTTTCCTCTTTTTCCTACTAGCCTTACTACAAAATGGCTTACTTATTTGGACTCGGTGATGGTATTCTGATTGCTTTGGGGATTATCCTGGTGGCAGTGTCGCTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATTAGGAATTTTTATTGCTATGAATCTCCTTCGACGGTTGACAACAAATTTGAAGCGCACATTTTTGTTCAGGTTCTTTTTGTGAATAATTGCGGAATTTGTTTAGAAATTGATCTTGAAAGAGTTTATTAATATTGTCAAAGTGCGAAAATATTATTTAAAGGAGCATAATTTGTCCAGAAGCAAAAATGTCTTTAGCCTAAAAGTTCCGACTTTGAAGTTCTCAAATTTGCTGTTAATTGTTATTTTTAGATTATTTTTCTTGATGTTACAAGCAAAAATTTAACGAAACACAGAAAACCACCCAAAAACTATCGAAATTTTTGAAAACCGAGTAAATTGGCTAAAATAATTGTTTTCCGAAATTCTGGGAACTTTAA</canonical>
            <polymorphic>AGAAAAAAGATTTACGACTTGTATTAAAACAGTTTTTATTACTATTTCCCTATTGTCACCATCCTTTTATAAGGAAAATGAGTTCTGTTGGGAAAAAATTGGAAAAAAATCTCAGTCTGCAAATTATGGCTTTTTTCAAATTGCCCTAATCCACCATATGTTTTCCAATAAAAGTGCATTTTGAATATTCTTGTTTACTTGTCAATTTGCACTTTTCTCCCCCTAGAGTGCAGTTTTGCAAGATGTTCTTTGCGGCGAACGCTCTTCGAGTGAAGACCCCCCTCATAAAAAGCTCGTCCCCCTTTTACGTTACCAGGGCAACGTAAGGCGCGCGTGCAACTCGTATTGAATTTTTCCTCTTTTTCCTACTAGCCTTACTACAAAATGGCTTACTTATTTGGACTCGGTGATGGTATTCTGATTGCTTTGGGGATTATCCTGGTGGCAGTGTCGCTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTACKTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATTAGGAATTTTTATTGCTATGAATCTCCTTCGACGGTTGACAACAAATTTGAAGCGCACATTTTTGTTCAGGTTCTTTTTGTGAATAATTGCGGAATTTGTTTAGAAATTGATCTTGAAAGAGTTTATTAATATTGTCAAAGTGCGAAAATATTATTTAAAGGAGCATAATTTGTCCAGAAGCAAAAATGTCTTTAGCCTAAAAGTTCCGACTTTGAAGTTCTCAAATTTGCTGTTAATTGTTATTTTTAGATTATTTTTCTTGATGTTACAAGCAAAAATTTAACGAAACACAGAAAACCACCCAAAAACTATCGAAATTTTTGAAAACCGAGTAAATTGGCTAAAATAATTGTTTTCCGAAATTCTGGGAACTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGCCTTACTACAAAATGGCTTA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCTCCACTAAATCACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TAGCCTTACTACAAAATGGCTTACTTATTTGGACTCGGTGATGGTATTCTGATTGCTTTGGGGATTATCCTGGTGGCAGTGTCGCTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGATTTAGTGGAGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TAGCCTTACTACAAAATGGCTTACTTATTTGGACTCGGTGATGGTATTCTGATTGCTTTGGGGATTATCCTGGTGGCAGTGTCGCTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTACKTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGATTTAGTGGAGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37822</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>174153</contig_pos>
        <strand>+</strand>
        <context>GATCTCAAGA[A/G]AATACAAATG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGA</left_flank>
        <right_flank>AATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGA</right_flank>
        <qual_score>146</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCCTATTGTCACCATCCTTTTATAAGGAAAATGAGTTCTGTTGGGAAAAAATTGGAAAAAAATCTCAGTCTGCAAATTATGGCTTTTTTCAAATTGCCCTAATCCACCATATGTTTTCCAATAAAAGTGCATTTTGAATATTCTTGTTTACTTGTCAATTTGCACTTTTCTCCCCCTAGAGTGCAGTTTTGCAAGATGTTCTTTGCGGCGAACGCTCTTCGAGTGAAGACCCCCCTCATAAAAAGCTCGTCCCCCTTTTACGTTACCAGGGCAACGTAAGGCGCGCGTGCAACTCGTATTGAATTTTTCCTCTTTTTCCTACTAGCCTTACTACAAAATGGCTTACTTATTTGGACTCGGTGATGGTATTCTGATTGCTTTGGGGATTATCCTGGTGGCAGTGTCGCTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATTAGGAATTTTTATTGCTATGAATCTCCTTCGACGGTTGACAACAAATTTGAAGCGCACATTTTTGTTCAGGTTCTTTTTGTGAATAATTGCGGAATTTGTTTAGAAATTGATCTTGAAAGAGTTTATTAATATTGTCAAAGTGCGAAAATATTATTTAAAGGAGCATAATTTGTCCAGAAGCAAAAATGTCTTTAGCCTAAAAGTTCCGACTTTGAAGTTCTCAAATTTGCTGTTAATTGTTATTTTTAGATTATTTTTCTTGATGTTACAAGCAAAAATTTAACGAAACACAGAAAACCACCCAAAAACTATCGAAATTTTTGAAAACCGAGTAAATTGGCTAAAATAATTGTTTTCCGAAATTCTGGGAACTTTAAGGGTGCAAGAAATTCAAAGTTTTTTTTTTCAAAAAATAGACAAT</canonical>
            <polymorphic>TTTCCCTATTGTCACCATCCTTTTATAAGGAAAATGAGTTCTGTTGGGAAAAAATTGGAAAAAAATCTCAGTCTGCAAATTATGGCTTTTTTCAAATTGCCCTAATCCACCATATGTTTTCCAATAAAAGTGCATTTTGAATATTCTTGTTTACTTGTCAATTTGCACTTTTCTCCCCCTAGAGTGCAGTTTTGCAAGATGTTCTTTGCGGCGAACGCTCTTCGAGTGAAGACCCCCCTCATAAAAAGCTCGTCCCCCTTTTACGTTACCAGGGCAACGTAAGGCGCGCGTGCAACTCGTATTGAATTTTTCCTCTTTTTCCTACTAGCCTTACTACAAAATGGCTTACTTATTTGGACTCGGTGATGGTATTCTGATTGCTTTGGGGATTATCCTGGTGGCAGTGTCGCTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGARAATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATTAGGAATTTTTATTGCTATGAATCTCCTTCGACGGTTGACAACAAATTTGAAGCGCACATTTTTGTTCAGGTTCTTTTTGTGAATAATTGCGGAATTTGTTTAGAAATTGATCTTGAAAGAGTTTATTAATATTGTCAAAGTGCGAAAATATTATTTAAAGGAGCATAATTTGTCCAGAAGCAAAAATGTCTTTAGCCTAAAAGTTCCGACTTTGAAGTTCTCAAATTTGCTGTTAATTGTTATTTTTAGATTATTTTTCTTGATGTTACAAGCAAAAATTTAACGAAACACAGAAAACCACCCAAAAACTATCGAAATTTTTGAAAACCGAGTAAATTGGCTAAAATAATTGTTTTCCGAAATTCTGGGAACTTTAAGGGTGCAAGAAATTCAAAGTTTTTTTTTTCAAAAAATAGACAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTGTATTGTGAACAGACGAT</pcr_primer_p1>
		<pcr_primer_p2>ACAAAAAGAACCTGAACAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATTAGGAATTTTTATTGCTATGAATCTCCTTCGACGGTTGACAACAAATTTGAAGCGCACATTTTTGTTCAGGTTCTTTTTGT</canonical_amplicon>
		<polymorphic_amplicon>CTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGARAATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATTAGGAATTTTTATTGCTATGAATCTCCTTCGACGGTTGACAACAAATTTGAAGCGCACATTTTTGTTCAGGTTCTTTTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37823</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>174182</contig_pos>
        <strand>+</strand>
        <context>GTTAGGAATA[G/T]ATATTTGGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATA</left_flank>
        <right_flank>ATATTTGGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAATGAGTTCTGTTGGGAAAAAATTGGAAAAAAATCTCAGTCTGCAAATTATGGCTTTTTTCAAATTGCCCTAATCCACCATATGTTTTCCAATAAAAGTGCATTTTGAATATTCTTGTTTACTTGTCAATTTGCACTTTTCTCCCCCTAGAGTGCAGTTTTGCAAGATGTTCTTTGCGGCGAACGCTCTTCGAGTGAAGACCCCCCTCATAAAAAGCTCGTCCCCCTTTTACGTTACCAGGGCAACGTAAGGCGCGCGTGCAACTCGTATTGAATTTTTCCTCTTTTTCCTACTAGCCTTACTACAAAATGGCTTACTTATTTGGACTCGGTGATGGTATTCTGATTGCTTTGGGGATTATCCTGGTGGCAGTGTCGCTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATTAGGAATTTTTATTGCTATGAATCTCCTTCGACGGTTGACAACAAATTTGAAGCGCACATTTTTGTTCAGGTTCTTTTTGTGAATAATTGCGGAATTTGTTTAGAAATTGATCTTGAAAGAGTTTATTAATATTGTCAAAGTGCGAAAATATTATTTAAAGGAGCATAATTTGTCCAGAAGCAAAAATGTCTTTAGCCTAAAAGTTCCGACTTTGAAGTTCTCAAATTTGCTGTTAATTGTTATTTTTAGATTATTTTTCTTGATGTTACAAGCAAAAATTTAACGAAACACAGAAAACCACCCAAAAACTATCGAAATTTTTGAAAACCGAGTAAATTGGCTAAAATAATTGTTTTCCGAAATTCTGGGAACTTTAAGGGTGCAAGAAATTCAAAGTTTTTTTTTTCAAAAAATAGACAATTTTCGAAATATCTGGACCACGTAAAAAAA</canonical>
            <polymorphic>GAAAATGAGTTCTGTTGGGAAAAAATTGGAAAAAAATCTCAGTCTGCAAATTATGGCTTTTTTCAAATTGCCCTAATCCACCATATGTTTTCCAATAAAAGTGCATTTTGAATATTCTTGTTTACTTGTCAATTTGCACTTTTCTCCCCCTAGAGTGCAGTTTTGCAAGATGTTCTTTGCGGCGAACGCTCTTCGAGTGAAGACCCCCCTCATAAAAAGCTCGTCCCCCTTTTACGTTACCAGGGCAACGTAAGGCGCGCGTGCAACTCGTATTGAATTTTTCCTCTTTTTCCTACTAGCCTTACTACAAAATGGCTTACTTATTTGGACTCGGTGATGGTATTCTGATTGCTTTGGGGATTATCCTGGTGGCAGTGTCGCTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATAKATATTTGGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATTAGGAATTTTTATTGCTATGAATCTCCTTCGACGGTTGACAACAAATTTGAAGCGCACATTTTTGTTCAGGTTCTTTTTGTGAATAATTGCGGAATTTGTTTAGAAATTGATCTTGAAAGAGTTTATTAATATTGTCAAAGTGCGAAAATATTATTTAAAGGAGCATAATTTGTCCAGAAGCAAAAATGTCTTTAGCCTAAAAGTTCCGACTTTGAAGTTCTCAAATTTGCTGTTAATTGTTATTTTTAGATTATTTTTCTTGATGTTACAAGCAAAAATTTAACGAAACACAGAAAACCACCCAAAAACTATCGAAATTTTTGAAAACCGAGTAAATTGGCTAAAATAATTGTTTTCCGAAATTCTGGGAACTTTAAGGGTGCAAGAAATTCAAAGTTTTTTTTTTCAAAAAATAGACAATTTTCGAAATATCTGGACCACGTAAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTGTATTGTGAACAGACGAT</pcr_primer_p1>
		<pcr_primer_p2>ACAAAAAGAACCTGAACAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATTAGGAATTTTTATTGCTATGAATCTCCTTCGACGGTTGACAACAAATTTGAAGCGCACATTTTTGTTCAGGTTCTTTTTGT</canonical_amplicon>
		<polymorphic_amplicon>CTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATAKATATTTGGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATTAGGAATTTTTATTGCTATGAATCTCCTTCGACGGTTGACAACAAATTTGAAGCGCACATTTTTGTTCAGGTTCTTTTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37824</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>174237</contig_pos>
        <strand>+</strand>
        <context>GAAATTAGGA[A/C]TWTTTATTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATTAGGA</left_flank>
        <right_flank>TTTTTATTGCTATGAATCTCCTTCGACGGTTGACAACAAATTTGAAGCGC</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTTTTTTCAAATTGCCCTAATCCACCATATGTTTTCCAATAAAAGTGCATTTTGAATATTCTTGTTTACTTGTCAATTTGCACTTTTCTCCCCCTAGAGTGCAGTTTTGCAAGATGTTCTTTGCGGCGAACGCTCTTCGAGTGAAGACCCCCCTCATAAAAAGCTCGTCCCCCTTTTACGTTACCAGGGCAACGTAAGGCGCGCGTGCAACTCGTATTGAATTTTTCCTCTTTTTCCTACTAGCCTTACTACAAAATGGCTTACTTATTTGGACTCGGTGATGGTATTCTGATTGCTTTGGGGATTATCCTGGTGGCAGTGTCGCTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATTAGGAATTTTTATTGCTATGAATCTCCTTCGACGGTTGACAACAAATTTGAAGCGCACATTTTTGTTCAGGTTCTTTTTGTGAATAATTGCGGAATTTGTTTAGAAATTGATCTTGAAAGAGTTTATTAATATTGTCAAAGTGCGAAAATATTATTTAAAGGAGCATAATTTGTCCAGAAGCAAAAATGTCTTTAGCCTAAAAGTTCCGACTTTGAAGTTCTCAAATTTGCTGTTAATTGTTATTTTTAGATTATTTTTCTTGATGTTACAAGCAAAAATTTAACGAAACACAGAAAACCACCCAAAAACTATCGAAATTTTTGAAAACCGAGTAAATTGGCTAAAATAATTGTTTTCCGAAATTCTGGGAACTTTAAGGGTGCAAGAAATTCAAAGTTTTTTTTTTCAAAAAATAGACAATTTTCGAAATATCTGGACCACGTAAAAAAAGGAAAATTATTCATAAAACTTTCCTAAAACCTAAATCGAAATATTTCGTTATTAG</canonical>
            <polymorphic>GCTTTTTTCAAATTGCCCTAATCCACCATATGTTTTCCAATAAAAGTGCATTTTGAATATTCTTGTTTACTTGTCAATTTGCACTTTTCTCCCCCTAGAGTGCAGTTTTGCAAGATGTTCTTTGCGGCGAACGCTCTTCGAGTGAAGACCCCCCTCATAAAAAGCTCGTCCCCCTTTTACGTTACCAGGGCAACGTAAGGCGCGCGTGCAACTCGTATTGAATTTTTCCTCTTTTTCCTACTAGCCTTACTACAAAATGGCTTACTTATTTGGACTCGGTGATGGTATTCTGATTGCTTTGGGGATTATCCTGGTGGCAGTGTCGCTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATTAGGAMTTTTTATTGCTATGAATCTCCTTCGACGGTTGACAACAAATTTGAAGCGCACATTTTTGTTCAGGTTCTTTTTGTGAATAATTGCGGAATTTGTTTAGAAATTGATCTTGAAAGAGTTTATTAATATTGTCAAAGTGCGAAAATATTATTTAAAGGAGCATAATTTGTCCAGAAGCAAAAATGTCTTTAGCCTAAAAGTTCCGACTTTGAAGTTCTCAAATTTGCTGTTAATTGTTATTTTTAGATTATTTTTCTTGATGTTACAAGCAAAAATTTAACGAAACACAGAAAACCACCCAAAAACTATCGAAATTTTTGAAAACCGAGTAAATTGGCTAAAATAATTGTTTTCCGAAATTCTGGGAACTTTAAGGGTGCAAGAAATTCAAAGTTTTTTTTTTCAAAAAATAGACAATTTTCGAAATATCTGGACCACGTAAAAAAAGGAAAATTATTCATAAAACTTTCCTAAAACCTAAATCGAAATATTTCGTTATTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>278 220 131 118 53 49 45 40 39 27</canonical_bands>
                <polymorphic_bands>318 220 131 118 53 49 45 39 27</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>145 133 126 65 62 57 51 42 41 40 39 36 31 27 19 13 13 12 12 11 10 8 7</canonical_bands>
                <polymorphic_bands>145 133 126 65 62 57 51 47 42 41 39 36 31 27 19 13 13 12 12 11 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTGTATTGTGAACAGACGAT</pcr_primer_p1>
		<pcr_primer_p2>ACAAAAAGAACCTGAACAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATTAGGAATTTTTATTGCTATGAATCTCCTTCGACGGTTGACAACAAATTTGAAGCGCACATTTTTGTTCAGGTTCTTTTTGT</canonical_amplicon>
		<polymorphic_amplicon>CTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATTAGGAMTTTTTATTGCTATGAATCTCCTTCGACGGTTGACAACAAATTTGAAGCGCACATTTTTGTTCAGGTTCTTTTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37825</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>174239</contig_pos>
        <strand>+</strand>
        <context>AATTAGGAMT[A/T]TTTATTGCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATTAGGAAT</left_flank>
        <right_flank>TTTATTGCTATGAATCTCCTTCGACGGTTGACAACAAATTTGAAGCGCAC</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTCAAATTGCCCTAATCCACCATATGTTTTCCAATAAAAGTGCATTTTGAATATTCTTGTTTACTTGTCAATTTGCACTTTTCTCCCCCTAGAGTGCAGTTTTGCAAGATGTTCTTTGCGGCGAACGCTCTTCGAGTGAAGACCCCCCTCATAAAAAGCTCGTCCCCCTTTTACGTTACCAGGGCAACGTAAGGCGCGCGTGCAACTCGTATTGAATTTTTCCTCTTTTTCCTACTAGCCTTACTACAAAATGGCTTACTTATTTGGACTCGGTGATGGTATTCTGATTGCTTTGGGGATTATCCTGGTGGCAGTGTCGCTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATTAGGAATTTTTATTGCTATGAATCTCCTTCGACGGTTGACAACAAATTTGAAGCGCACATTTTTGTTCAGGTTCTTTTTGTGAATAATTGCGGAATTTGTTTAGAAATTGATCTTGAAAGAGTTTATTAATATTGTCAAAGTGCGAAAATATTATTTAAAGGAGCATAATTTGTCCAGAAGCAAAAATGTCTTTAGCCTAAAAGTTCCGACTTTGAAGTTCTCAAATTTGCTGTTAATTGTTATTTTTAGATTATTTTTCTTGATGTTACAAGCAAAAATTTAACGAAACACAGAAAACCACCCAAAAACTATCGAAATTTTTGAAAACCGAGTAAATTGGCTAAAATAATTGTTTTCCGAAATTCTGGGAACTTTAAGGGTGCAAGAAATTCAAAGTTTTTTTTTTCAAAAAATAGACAATTTTCGAAATATCTGGACCACGTAAAAAAAGGAAAATTATTCATAAAACTTTCCTAAAACCTAAATCGAAATATTTCGTTATTAGTA</canonical>
            <polymorphic>TTTTTTCAAATTGCCCTAATCCACCATATGTTTTCCAATAAAAGTGCATTTTGAATATTCTTGTTTACTTGTCAATTTGCACTTTTCTCCCCCTAGAGTGCAGTTTTGCAAGATGTTCTTTGCGGCGAACGCTCTTCGAGTGAAGACCCCCCTCATAAAAAGCTCGTCCCCCTTTTACGTTACCAGGGCAACGTAAGGCGCGCGTGCAACTCGTATTGAATTTTTCCTCTTTTTCCTACTAGCCTTACTACAAAATGGCTTACTTATTTGGACTCGGTGATGGTATTCTGATTGCTTTGGGGATTATCCTGGTGGCAGTGTCGCTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATTAGGAATWTTTATTGCTATGAATCTCCTTCGACGGTTGACAACAAATTTGAAGCGCACATTTTTGTTCAGGTTCTTTTTGTGAATAATTGCGGAATTTGTTTAGAAATTGATCTTGAAAGAGTTTATTAATATTGTCAAAGTGCGAAAATATTATTTAAAGGAGCATAATTTGTCCAGAAGCAAAAATGTCTTTAGCCTAAAAGTTCCGACTTTGAAGTTCTCAAATTTGCTGTTAATTGTTATTTTTAGATTATTTTTCTTGATGTTACAAGCAAAAATTTAACGAAACACAGAAAACCACCCAAAAACTATCGAAATTTTTGAAAACCGAGTAAATTGGCTAAAATAATTGTTTTCCGAAATTCTGGGAACTTTAAGGGTGCAAGAAATTCAAAGTTTTTTTTTTCAAAAAATAGACAATTTTCGAAATATCTGGACCACGTAAAAAAAGGAAAATTATTCATAAAACTTTCCTAAAACCTAAATCGAAATATTTCGTTATTAGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>278 218 131 120 53 49 45 40 39 27</canonical_bands>
                <polymorphic_bands>318 218 131 120 53 49 45 39 27</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>145 133 126 65 62 57 53 42 41 40 39 36 31 27 19 13 13 12 12 11 8 8 7</canonical_bands>
                <polymorphic_bands>145 133 126 65 62 57 53 47 42 41 39 36 31 27 19 13 13 12 12 11 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTGTATTGTGAACAGACGAT</pcr_primer_p1>
		<pcr_primer_p2>ACAAAAAGAACCTGAACAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATTAGGAATTTTTATTGCTATGAATCTCCTTCGACGGTTGACAACAAATTTGAAGCGCACATTTTTGTTCAGGTTCTTTTTGT</canonical_amplicon>
		<polymorphic_amplicon>CTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATTAGGAATWTTTATTGCTATGAATCTCCTTCGACGGTTGACAACAAATTTGAAGCGCACATTTTTGTTCAGGTTCTTTTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37826</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>174254</contig_pos>
        <strand>+</strand>
        <context>TTGCTATGAA[A/T]CTCCTTCGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTAGTGGAGAAAATATTCTTCTGAAATTAGGAATTTTTATTGCTATGAA</left_flank>
        <right_flank>CTCCTTCGACGGTTGACAACAAATTTGAAGCGCACATTTTTGTTCAGGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAATCCACCATATGTTTTCCAATAAAAGTGCATTTTGAATATTCTTGTTTACTTGTCAATTTGCACTTTTCTCCCCCTAGAGTGCAGTTTTGCAAGATGTTCTTTGCGGCGAACGCTCTTCGAGTGAAGACCCCCCTCATAAAAAGCTCGTCCCCCTTTTACGTTACCAGGGCAACGTAAGGCGCGCGTGCAACTCGTATTGAATTTTTCCTCTTTTTCCTACTAGCCTTACTACAAAATGGCTTACTTATTTGGACTCGGTGATGGTATTCTGATTGCTTTGGGGATTATCCTGGTGGCAGTGTCGCTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATTAGGAATTTTTATTGCTATGAATCTCCTTCGACGGTTGACAACAAATTTGAAGCGCACATTTTTGTTCAGGTTCTTTTTGTGAATAATTGCGGAATTTGTTTAGAAATTGATCTTGAAAGAGTTTATTAATATTGTCAAAGTGCGAAAATATTATTTAAAGGAGCATAATTTGTCCAGAAGCAAAAATGTCTTTAGCCTAAAAGTTCCGACTTTGAAGTTCTCAAATTTGCTGTTAATTGTTATTTTTAGATTATTTTTCTTGATGTTACAAGCAAAAATTTAACGAAACACAGAAAACCACCCAAAAACTATCGAAATTTTTGAAAACCGAGTAAATTGGCTAAAATAATTGTTTTCCGAAATTCTGGGAACTTTAAGGGTGCAAGAAATTCAAAGTTTTTTTTTTCAAAAAATAGACAATTTTCGAAATATCTGGACCACGTAAAAAAAGGAAAATTATTCATAAAACTTTCCTAAAACCTAAATCGAAATATTTCGTTATTAGTAGTCAAAAACAACATT</canonical>
            <polymorphic>CTAATCCACCATATGTTTTCCAATAAAAGTGCATTTTGAATATTCTTGTTTACTTGTCAATTTGCACTTTTCTCCCCCTAGAGTGCAGTTTTGCAAGATGTTCTTTGCGGCGAACGCTCTTCGAGTGAAGACCCCCCTCATAAAAAGCTCGTCCCCCTTTTACGTTACCAGGGCAACGTAAGGCGCGCGTGCAACTCGTATTGAATTTTTCCTCTTTTTCCTACTAGCCTTACTACAAAATGGCTTACTTATTTGGACTCGGTGATGGTATTCTGATTGCTTTGGGGATTATCCTGGTGGCAGTGTCGCTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATTAGGAATTTTTATTGCTATGAAWCTCCTTCGACGGTTGACAACAAATTTGAAGCGCACATTTTTGTTCAGGTTCTTTTTGTGAATAATTGCGGAATTTGTTTAGAAATTGATCTTGAAAGAGTTTATTAATATTGTCAAAGTGCGAAAATATTATTTAAAGGAGCATAATTTGTCCAGAAGCAAAAATGTCTTTAGCCTAAAAGTTCCGACTTTGAAGTTCTCAAATTTGCTGTTAATTGTTATTTTTAGATTATTTTTCTTGATGTTACAAGCAAAAATTTAACGAAACACAGAAAACCACCCAAAAACTATCGAAATTTTTGAAAACCGAGTAAATTGGCTAAAATAATTGTTTTCCGAAATTCTGGGAACTTTAAGGGTGCAAGAAATTCAAAGTTTTTTTTTTCAAAAAATAGACAATTTTCGAAATATCTGGACCACGTAAAAAAAGGAAAATTATTCATAAAACTTTCCTAAAACCTAAATCGAAATATTTCGTTATTAGTAGTCAAAAACAACATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>503 256 241</canonical_bands>
                <polymorphic_bands>744 256</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTGTATTGTGAACAGACGAT</pcr_primer_p1>
		<pcr_primer_p2>ACAAAAAGAACCTGAACAAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATTAGGAATTTTTATTGCTATGAATCTCCTTCGACGGTTGACAACAAATTTGAAGCGCACATTTTTGTTCAGGTTCTTTTTGT</canonical_amplicon>
		<polymorphic_amplicon>CTGTGTATTGTGAACAGACGATCGAAAGAATTGTGAGTATAATTACTTTTTGTGTCAAGTCAGATAGAGGTGTGTAAGCGGATCTCAAGAGAATACAAATGGGTGTGGTGTTAGGAATAGATATTTGGATGGATTTTGTGATTTAGTGGAGAAAATATTCTTCTGAAATTAGGAATTTTTATTGCTATGAAWCTCCTTCGACGGTTGACAACAAATTTGAAGCGCACATTTTTGTTCAGGTTCTTTTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37827</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>223118</contig_pos>
        <strand>+</strand>
        <context>CACGTGCTGG[A/G]AAAAAAAARG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGGCGCTTGGAGAATTCCCTGAAGCGGCAAGAACCGAGGCACGTGCTGG</left_flank>
        <right_flank>AAAAAAAAGGTCGTTATGGGTAATAAAAATACGTATAAATACAAATCCGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTGAAAAATAGAACTTAATTATACCGGGTACAAAAAAAGACAGAAAAGATTGGTAGGACTTTTCTCAAGACCTAAAGCTCTAATCTACAGAAAATATCGAGTGGGGAATAACACCAATATGGCGTTATTGAGGTTTGGGAGATTTCGAAAAAGAAAAGAAAATATATACAATTCGGGGATTCTTATAAATTAGAAAAAAAATCAGACAACATATCGATCCTTTGTCAGATGCCTCTCTAGCGTACGCTCCTCCTGTGGTGTCAAATCCAAAATCCTTCCGATATTATAGATATTGGCCAACTGGTTGTGACGATCATTGCTGAAACCTCTTAAGGTTCATTTTTGGTTTCGAAATTCTAAACAAAACACTCTTACCTCATGATAAAGTTGAATAGAGCTTCTTTGGATTCAGCGTCCAATCCCTGTTGGAAGGATTCTGAACTACTTCCGGCGCTTGGAGAATTCCCTGAAGCGGCAAGAACCGAGGCACGTGCTGGAAAAAAAAAGGTCGTTATGGGTAATAAAAATACGTATAAATACAAATCCGCTTACGTTGCATTTTGCGACTGGTCATAACGGATCCGGTCGGCGACTTTCGATGACTGTTGATGATCTGATTTTGCTTACAAATAAGCATATCTCTCTCCCGCAGCTCGTTCTCAAGGTGGAGAACTTTTCTATCGAACTGAAAGTCTTTTTTTAGTTTGTATAGGACTTTTCATGTCTTACGGTATCTGCCAGTTTTGCCATACTCGTCTGATTCAAGATCAGTTTTTGTTTGTTCAACTCGCGCTGCAAATCCTCAATCTCCATGGACATCTGAGCCTCTCTGGATAGGAATCGGTCACGTTCCATGTTTTTCATCTTGAGCACTGTGACTTCTTCAATCGCCTTATCTCGGAGTTTAGTCACATCACTCAGTTTCTTAGTGATGGTATCCAACTCCTCTCTGAGAAAAAACGATATAACCTATGAGCAAGAGAAGAGCTAAGATATAC</canonical>
            <polymorphic>GAGTGAAAAATAGAACTTAATTATACCGGGTACAAAAAAAGACAGAAAAGATTGGTAGGACTTTTCTCAAGACCTAAAGCTCTAATCTACAGAAAATATCGAGTGGGGAATAACACCAATATGGCGTTATTGAGGTTTGGGAGATTTCGAAAAAGAAAAGAAAATATATACAATTCGGGGATTCTTATAAATTAGAAAAAAAATCAGACAACATATCGATCCTTTGTCAGATGCCTCTCTAGCGTACGCTCCTCCTGTGGTGTCAAATCCAAAATCCTTCCGATATTATAGATATTGGCCAACTGGTTGTGACGATCATTGCTGAAACCTCTTAAGGTTCATTTTTGGTTTCGAAATTCTAAACAAAACACTCTTACCTCATGATAAAGTTGAATAGAGCTTCTTTGGATTCAGCGTCCAATCCCTGTTGGAAGGATTCTGAACTACTTCCGGCGCTTGGAGAATTCCCTGAAGCGGCAAGAACCGAGGCACGTGCTGGRAAAAAAAAGGTCGTTATGGGTAATAAAAATACGTATAAATACAAATCCGCTTACGTTGCATTTTGCGACTGGTCATAACGGATCCGGTCGGCGACTTTCGATGACTGTTGATGATCTGATTTTGCTTACAAATAAGCATATCTCTCTCCCGCAGCTCGTTCTCAAGGTGGAGAACTTTTCTATCGAACTGAAAGTCTTTTTTTAGTTTGTATAGGACTTTTCATGTCTTACGGTATCTGCCAGTTTTGCCATACTCGTCTGATTCAAGATCAGTTTTTGTTTGTTCAACTCGCGCTGCAAATCCTCAATCTCCATGGACATCTGAGCCTCTCTGGATAGGAATCGGTCACGTTCCATGTTTTTCATCTTGAGCACTGTGACTTCTTCAATCGCCTTATCTCGGAGTTTAGTCACATCACTCAGTTTCTTAGTGATGGTATCCAACTCCTCTCTGAGAAAAAACGATATAACCTATGAGCAAGAGAAGAGCTAAGATATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAATAGAGCTTCTTTGGATTC</pcr_primer_p1>
		<pcr_primer_p2>ATGCTTATTTGTAAGCAAAATCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAATAGAGCTTCTTTGGATTCAGCGTCCAATCCCTGTTGGAAGGATTCTGAACTACTTCCGGCGCTTGGAGAATTCCCTGAAGCGGCAAGAACCGAGGCACGTGCTGGAAAAAAAAAGGTCGTTATGGGTAATAAAAATACGTATAAATACAAATCCGCTTACGTTGCATTTTGCGACTGGTCATAACGGATCCGGTCGGCGACTTTCGATGACTGTTGATGATCTGATTTTGCTTACAAATAAGCAT</canonical_amplicon>
		<polymorphic_amplicon>TGAATAGAGCTTCTTTGGATTCAGCGTCCAATCCCTGTTGGAAGGATTCTGAACTACTTCCGGCGCTTGGAGAATTCCCTGAAGCGGCAAGAACCGAGGCACGTGCTGGRAAAAAAAAGGTCGTTATGGGTAATAAAAATACGTATAAATACAAATCCGCTTACGTTGCATTTTGCGACTGGTCATAACGGATCCGGTCGGCGACTTTCGATGACTGTTGATGATCTGATTTTGCTTACAAATAAGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37828</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>224691</contig_pos>
        <strand>+</strand>
        <context>TGCTCAAAAA[C/T]AGGTCAAACG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACCATCTGGCGCCCCGCCCCCCGATTGACAAGGGCAGGTGCTCAAAAA</left_flank>
        <right_flank>AGGTCAAACGGAAAGAAACATATGTTCAATAACGCTTTGAAATTTTGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTATTGCTGAAAGTGATATCATTAGGTAAATAATTGGTTTTAGACCATAAGTTTTAGAACAGCTTCCGGCGCTGGCGCCTGGCTACCATTTCCTTATCATTAAAGATTTTCAAAAAATTATAAAAAATTAAAGTCTACCTGCTCAGCTTCAACTTCGATTCCATCAATAGTTTGTTGAGACTCTTCAAGGTCCTCCTTCAGCTTGGCATTGATTTTCAGGAGTTCCTGAAAATTAAAAAATTTATTAAATCAATGAATCATCCTATTACTCACCTTCTCGCCATTCTTAACCTTATCCAGGTCGGCCTGAAGTTTATCAATTTCCACTTGAAGACTCTCCATCACTTCCGGAAGGTGTCGGTCGACCAGAATGAGCGAATCGTTGTCCGTCTAGAAAAGAATTCAAAATTTTAATATTTACCCGATGTCAATTTTCAAATTTAACATAAACCATCTGGCGCCCCGCCCCCCGATTGACAAGGGCAGGTGCTCAAAAACAGGTCAAACGGAAAGAAACATATGTTCAATAACGCTTTGAAATTTTGAAAAAAAAAGTGTCGGAGGAGGTGGCGAAACTAATAAACTAATAAAAAATTTATCAGTCAACAGTGGGTGAGTTTCTTATCAGCTGGAAAATTCCTTGAAATAATTTCACCAGCGTTAGCCGACCACGAAAAAAGGAATGCTTCAGAAAACTGTCAATTAGACCTGGAGGATGACATGATAATGATGAGTGGAGGAAAAACAAGAAAATGCGAATAAGGATAAGGAGAACGGAGAACACACCATGATCCGTCTTAGAAAAAAAAATATGCGTCACGGATCATTTGGGGGAGACCAGAGGGTAAAAAAGATAGTTCACTGAGAATAGAAGGTCAAAAGTTTTTGAACTACCACTGACACCATACAGATATCAACATGGTTACATAACGACACTGGCAATAGGGCGGGGTATCTACACCAAACAACTAATTCGAATATTATAACCTACAAAAATG</canonical>
            <polymorphic>GTGTATTGCTGAAAGTGATATCATTAGGTAAATAATTGGTTTTAGACCATAAGTTTTAGAACAGCTTCCGGCGCTGGCGCCTGGCTACCATTTCCTTATCATTAAAGATTTTCAAAAAATTATAAAAAATTAAAGTCTACCTGCTCAGCTTCAACTTCGATTCCATCAATAGTTTGTTGAGACTCTTCAAGGTCCTCCTTCAGCTTGGCATTGATTTTCAGGAGTTCCTGAAAATTAAAAAATTTATTAAATCAATGAATCATCCTATTACTCACCTTCTCGCCATTCTTAACCTTATCCAGGTCGGCCTGAAGTTTATCAATTTCCACTTGAAGACTCTCCATCACTTCCGGAAGGTGTCGGTCGACCAGAATGAGCGAATCGTTGTCCGTCTAGAAAAGAATTCAAAATTTTAATATTTACCCGATGTCAATTTTCAAATTTAACATAAACCATCTGGCGCCCCGCCCCCCGATTGACAAGGGCAGGTGCTCAAAAAYAGGTCAAACGGAAAGAAACATATGTTCAATAACGCTTTGAAATTTTGAAAAAAAAAGTGTCGGAGGAGGTGGCGAAACTAATAAACTAATAAAAAATTTATCAGTCAACAGTGGGTGAGTTTCTTATCAGCTGGAAAATTCCTTGAAATAATTTCACCAGCGTTAGCCGACCACGAAAAAAGGAATGCTTCAGAAAACTGTCAATTAGACCTGGAGGATGACATGATAATGATGAGTGGAGGAAAAACAAGAAAATGCGAATAAGGATAAGGAGAACGGAGAACACACCATGATCCGTCTTAGAAAAAAAAATATGCGTCACGGATCATTTGGGGGAGACCAGAGGGTAAAAAAGATAGTTCACTGAGAATAGAAGGTCAAAAGTTTTTGAACTACCACTGACACCATACAGATATCAACATGGTTACATAACGACACTGGCAATAGGGCGGGGTATCTACACCAAACAACTAATTCGAATATTATAACCTACAAAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGTCTAGAAAAGAATTCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCCAGCTGATAAGAAACTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCGTCTAGAAAAGAATTCAAAATTTTAATATTTACCCGATGTCAATTTTCAAATTTAACATAAACCATCTGGCGCCCCGCCCCCCGATTGACAAGGGCAGGTGCTCAAAAACAGGTCAAACGGAAAGAAACATATGTTCAATAACGCTTTGAAATTTTGAAAAAAAAAGTGTCGGAGGAGGTGGCGAAACTAATAAACTAATAAAAAATTTATCAGTCAACAGTGGGTGAGTTTCTTATCAGCTGGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CCGTCTAGAAAAGAATTCAAAATTTTAATATTTACCCGATGTCAATTTTCAAATTTAACATAAACCATCTGGCGCCCCGCCCCCCGATTGACAAGGGCAGGTGCTCAAAAAYAGGTCAAACGGAAAGAAACATATGTTCAATAACGCTTTGAAATTTTGAAAAAAAAAGTGTCGGAGGAGGTGGCGAAACTAATAAACTAATAAAAAATTTATCAGTCAACAGTGGGTGAGTTTCTTATCAGCTGGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37829</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>241038</contig_pos>
        <strand></strand>
        <context>attatttttt[T/A]waatttcatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTT</left_flank>
        <right_flank>TAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCACCAAAACTTCCAACTTCGAGCTCAATTATCTCGTTTCCTGTGAAAGGTATCAAAAACTTGTCAACTTTTAAATTGTTTGTCATAATATCACCAATATTTTATCAGTTTGCAAAATTTTGATTCCGCTCACAGGAATCGAGATAATTGAGTTTGTATAGAGTGGGCTTCTATTGAAGGTATCTTTTTCCGCCAAGGTTCAAAATTCAAATTGCAGATTATTGTTGTATTCTCAATTTCTCGTTTTTCACAGACCCAACTTCACATCTAATTATGGCTTATGACTGGTGCATTGCTCATAATTCTGTTGA</canonical>
            <polymorphic>TAATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTWTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCACCAAAACTTCCAACTTCGAGCTCAATTATCTCGTTTCCTGTGAAAGGTATCAAAAACTTGTCAACTTTTAAATTGTTTGTCATAATATCACCAATATTTTATCAGTTTGCAAAATTTTGATTCCGCTCACAGGAATCGAGATAATTGAGTTTGTATAGAGTGGGCTTCTATTGAAGGTATCTTTTTCCGCCAAGGTTCAAAATTCAAATTGCAGATTATTGTTGTATTCTCAATTTCTCGTTTTTCACAGACCCAACTTCACATCTAATTATGGCTTATGACTGGTGCATTGCTCATAATTCTGTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>274 240 172 106 92 70 28 10 8</canonical_bands>
                <polymorphic_bands>274 240 172 106 102 70 28 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCATCTTAATTTTGTTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>GCAATTTGAATTTTGAACCTT</pcr_primer_p2>
		<pcr_amplicon_size>503</pcr_amplicon_size>
		<canonical_amplicon>TGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCACCAAAACTTCCAACTTCGAGCTCAATTATCTCGTTTCCTGTGAAAGGTATCAAAAACTTGTCAACTTTTAAATTGTTTGTCATAATATCACCAATATTTTATCAGTTTGCAAAATTTTGATTCCGCTCACAGGAATCGAGATAATTGAGTTTGTATAGAGTGGGCTTCTATTGAAGGTATCTTTTTCCGCCAAGGTTCAAAATTCAAATTGC</canonical_amplicon>
		<polymorphic_amplicon>TGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTWTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCACCAAAACTTCCAACTTCGAGCTCAATTATCTCGTTTCCTGTGAAAGGTATCAAAAACTTGTCAACTTTTAAATTGTTTGTCATAATATCACCAATATTTTATCAGTTTGCAAAATTTTGATTCCGCTCACAGGAATCGAGATAATTGAGTTTGTATAGAGTGGGCTTCTATTGAAGGTATCTTTTTCCGCCAAGGTTCAAAATTCAAATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37830</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>241039</contig_pos>
        <strand></strand>
        <context>ttattttttw[T/A]aatttcattt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTT</left_flank>
        <right_flank>AATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCACCAAAACTTCCAACTTCGAGCTCAATTATCTCGTTTCCTGTGAAAGGTATCAAAAACTTGTCAACTTTTAAATTGTTTGTCATAATATCACCAATATTTTATCAGTTTGCAAAATTTTGATTCCGCTCACAGGAATCGAGATAATTGAGTTTGTATAGAGTGGGCTTCTATTGAAGGTATCTTTTTCCGCCAAGGTTCAAAATTCAAATTGCAGATTATTGTTGTATTCTCAATTTCTCGTTTTTCACAGACCCAACTTCACATCTAATTATGGCTTATGACTGGTGCATTGCTCATAATTCTGTTGAC</canonical>
            <polymorphic>AATCCACAAAATCAAATGTATATAATCGTCACCTGATTTATTAGGCCCTATTGCATAATTGCTCTGTTCAGTTTAGACATATTTGTACGACTAGGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTWAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCACCAAAACTTCCAACTTCGAGCTCAATTATCTCGTTTCCTGTGAAAGGTATCAAAAACTTGTCAACTTTTAAATTGTTTGTCATAATATCACCAATATTTTATCAGTTTGCAAAATTTTGATTCCGCTCACAGGAATCGAGATAATTGAGTTTGTATAGAGTGGGCTTCTATTGAAGGTATCTTTTTCCGCCAAGGTTCAAAATTCAAATTGCAGATTATTGTTGTATTCTCAATTTCTCGTTTTTCACAGACCCAACTTCACATCTAATTATGGCTTATGACTGGTGCATTGCTCATAATTCTGTTGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>273 241 172 106 92 70 28 10 8</canonical_bands>
                <polymorphic_bands>273 241 172 106 102 70 28 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCATCTTAATTTTGTTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>GCAATTTGAATTTTGAACCTT</pcr_primer_p2>
		<pcr_amplicon_size>503</pcr_amplicon_size>
		<canonical_amplicon>TGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCACCAAAACTTCCAACTTCGAGCTCAATTATCTCGTTTCCTGTGAAAGGTATCAAAAACTTGTCAACTTTTAAATTGTTTGTCATAATATCACCAATATTTTATCAGTTTGCAAAATTTTGATTCCGCTCACAGGAATCGAGATAATTGAGTTTGTATAGAGTGGGCTTCTATTGAAGGTATCTTTTTCCGCCAAGGTTCAAAATTCAAATTGC</canonical_amplicon>
		<polymorphic_amplicon>TGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTWAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCACCAAAACTTCCAACTTCGAGCTCAATTATCTCGTTTCCTGTGAAAGGTATCAAAAACTTGTCAACTTTTAAATTGTTTGTCATAATATCACCAATATTTTATCAGTTTGCAAAATTTTGATTCCGCTCACAGGAATCGAGATAATTGAGTTTGTATAGAGTGGGCTTCTATTGAAGGTATCTTTTTCCGCCAAGGTTCAAAATTCAAATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37831</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>241132</contig_pos>
        <strand></strand>
        <context>tttgttaact[G/A]ataaaaygtt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACT</left_flank>
        <right_flank>ATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCACCAAAACTTCCAACTTCGAGCTCAATTATCTCGTTTCCTGTGAAAGGTATCAAAAACTTGTCAACTTTTAAATTGTTTGTCATAATATCACCAATATTTTATCAGTTTGCAAAATTTTGATTCCGCTCACAGGAATCGAGATAATTGAGTTTGTATAGAGTGGGCTTCTATTGAAGGTATCTTTTTCCGCCAAGGTTCAAAATTCAAATTGCAGATTATTGTTGTATTCTCAATTTCTCGTTTTTCACAGACCCAACTTCACATCTAATTATGGCTTATGACTGGTGCATTGCTCATAATTCTGTTGACTCATTTCCTCCTGCTCTTTTTCTTAATTTTAGCCAATCTCGATGAATAGGTTCAATTATCCCCCATGAGTCCAAAACTTCCCATTTTCTTGGA</canonical>
            <polymorphic>GGGTAGGAAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTRATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCACCAAAACTTCCAACTTCGAGCTCAATTATCTCGTTTCCTGTGAAAGGTATCAAAAACTTGTCAACTTTTAAATTGTTTGTCATAATATCACCAATATTTTATCAGTTTGCAAAATTTTGATTCCGCTCACAGGAATCGAGATAATTGAGTTTGTATAGAGTGGGCTTCTATTGAAGGTATCTTTTTCCGCCAAGGTTCAAAATTCAAATTGCAGATTATTGTTGTATTCTCAATTTCTCGTTTTTCACAGACCCAACTTCACATCTAATTATGGCTTATGACTGGTGCATTGCTCATAATTCTGTTGACTCATTTCCTCCTGCTCTTTTTCTTAATTTTAGCCAATCTCGATGAATAGGTTCAATTATCCCCCATGAGTCCAAAACTTCCCATTTTCTTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCATCTTAATTTTGTTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>GCAATTTGAATTTTGAACCTT</pcr_primer_p2>
		<pcr_amplicon_size>503</pcr_amplicon_size>
		<canonical_amplicon>TGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCACCAAAACTTCCAACTTCGAGCTCAATTATCTCGTTTCCTGTGAAAGGTATCAAAAACTTGTCAACTTTTAAATTGTTTGTCATAATATCACCAATATTTTATCAGTTTGCAAAATTTTGATTCCGCTCACAGGAATCGAGATAATTGAGTTTGTATAGAGTGGGCTTCTATTGAAGGTATCTTTTTCCGCCAAGGTTCAAAATTCAAATTGC</canonical_amplicon>
		<polymorphic_amplicon>TGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTRATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCACCAAAACTTCCAACTTCGAGCTCAATTATCTCGTTTCCTGTGAAAGGTATCAAAAACTTGTCAACTTTTAAATTGTTTGTCATAATATCACCAATATTTTATCAGTTTGCAAAATTTTGATTCCGCTCACAGGAATCGAGATAATTGAGTTTGTATAGAGTGGGCTTCTATTGAAGGTATCTTTTTCCGCCAAGGTTCAAAATTCAAATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37832</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>241139</contig_pos>
        <strand></strand>
        <context>actrataaaa[T/C]gtttatcata</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAA</left_flank>
        <right_flank>GTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCACCAAAACTTCCAACTTCGAGCTCAATTATCTCGTTTCCTGTGAAAGGTATCAAAAACTTGTCAACTTTTAAATTGTTTGTCATAATATCACCAATATTTTATCAGTTTGCAAAATTTTGATTCCGCTCACAGGAATCGAGATAATTGAGTTTGTATAGAGTGGGCTTCTATTGAAGGTATCTTTTTCCGCCAAGGTTCAAAATTCAAATTGCAGATTATTGTTGTATTCTCAATTTCTCGTTTTTCACAGACCCAACTTCACATCTAATTATGGCTTATGACTGGTGCATTGCTCATAATTCTGTTGACTCATTTCCTCCTGCTCTTTTTCTTAATTTTAGCCAATCTCGATGAATAGGTTCAATTATCCCCCATGAGTCCAAAACTTCCCATTTTCTTGGAATTCTCT</canonical>
            <polymorphic>AAAAATATCGAAAAAATGATCATAAGGCAATTCCAGATTTGCTAATGCTTTTGTGAAAATGGGAATTTCTCAAAGGACCTAAAACGTTAGGAATTCCAGAACTTTCCACAAAGAAATACACATAATTTTTCTTGAAGTAATCACACTGAGAAATTTTTCTCAGATCTAGTTTTTAAGCCAGAAAGCGCTACTTTTTTGTATTAAATGTTTTCAGAAACCAATAAAATTTCTAAAAAAGTGTGTTTTGTTGGAATCGAATGGTTCAGTCTTTTTTGGAATCATATATACCTAAATATTGTTTGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAAYGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCACCAAAACTTCCAACTTCGAGCTCAATTATCTCGTTTCCTGTGAAAGGTATCAAAAACTTGTCAACTTTTAAATTGTTTGTCATAATATCACCAATATTTTATCAGTTTGCAAAATTTTGATTCCGCTCACAGGAATCGAGATAATTGAGTTTGTATAGAGTGGGCTTCTATTGAAGGTATCTTTTTCCGCCAAGGTTCAAAATTCAAATTGCAGATTATTGTTGTATTCTCAATTTCTCGTTTTTCACAGACCCAACTTCACATCTAATTATGGCTTATGACTGGTGCATTGCTCATAATTCTGTTGACTCATTTCCTCCTGCTCTTTTTCTTAATTTTAGCCAATCTCGATGAATAGGTTCAATTATCCCCCATGAGTCCAAAACTTCCCATTTTCTTGGAATTCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCATCTTAATTTTGTTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>GCAATTTGAATTTTGAACCTT</pcr_primer_p2>
		<pcr_amplicon_size>503</pcr_amplicon_size>
		<canonical_amplicon>TGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAATGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCACCAAAACTTCCAACTTCGAGCTCAATTATCTCGTTTCCTGTGAAAGGTATCAAAAACTTGTCAACTTTTAAATTGTTTGTCATAATATCACCAATATTTTATCAGTTTGCAAAATTTTGATTCCGCTCACAGGAATCGAGATAATTGAGTTTGTATAGAGTGGGCTTCTATTGAAGGTATCTTTTTCCGCCAAGGTTCAAAATTCAAATTGC</canonical_amplicon>
		<polymorphic_amplicon>TGCATCTTAATTTTGTTTTGAAAATTTGAACTTTTTGCTTTAGAATTTACTAGGAACACCAATTTTTTGAATTTTCATGTGAAAAATTATTATTTTTTTTAATTTCATTTAAAAATTTAAACGTTCACTCAAATTGTTACTTTTGACTTCAATATCTCGATTCTTGTGAAAGATTACAAAAATTTGTTAACTGATAAAAYGTTTATCATAATAATACCAACATTTTATTAGTTGACAGATTTTTCATATCTATCATATGAATTGAGATATTTGAGCTTTCCAAGAAGCCCACCAAAACTTCCAACTTCGAGCTCAATTATCTCGTTTCCTGTGAAAGGTATCAAAAACTTGTCAACTTTTAAATTGTTTGTCATAATATCACCAATATTTTATCAGTTTGCAAAATTTTGATTCCGCTCACAGGAATCGAGATAATTGAGTTTGTATAGAGTGGGCTTCTATTGAAGGTATCTTTTTCCGCCAAGGTTCAAAATTCAAATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37833</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>283517</contig_pos>
        <strand></strand>
        <context>CACGGATACC[G/A]CCTCCATCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGTTCTTCGATAGCAATAAGAGTTTGGATAATGACCAATCCACGGATACC</left_flank>
        <right_flank>CCTCCATCCATAGAGATCAAGTTGACTTTGTTTTTTTTGCACTTTCCAGA</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATCCAGCGCTGGGTTGTTTGAAATTATACCACCATCGATGTATCTATCCTCGGAAGGTTTGAACAAAACTGGTGCGGCTGTTGACCGACGAAGCGCCATCCATAGTGGCATCTCTCTTGGTGTCTCCGGAGCAAGGTCCACAGCTGGTTTGTAGTTTCTAGCCATCTCCAATCGCACTGGAAGTTTTTCTGAGTTAACCGCACTGATCATTAGTCGTGGGAACGGGATGTCCCAGACAGTTCCAGTTCCGAATTGATCTTGAATGAACTTCTCGAGCTGAACTGTATCATAGGGTGGCATGATTCCATCGAAGACCTTGTCTTTGAGAAGCAAATAAGTTTGCTGCATTTCCCGGAGACTCTTTCCAGTCGCCAATCCTGCCATAATCAGAGATCCAGTTGACGTTCCAGCCGACCAATCGAAATACTTAAAGATATCATCTCCCAGACGTTCTTCGATAGCAATAAGAGTTTGGATAATGACCAATCCACGGATACCGCCTCCATCCATAGAGATCAAGTTGACTTTGTTTTTTTTGCACTTTCCAGAGTTCTCCAGATTCTGCTCAATATTCAATCTCTCGGCAGCCGATAGCTCAGTCTTCTCATAATCAGTTTCAATTCCGATGTGAATGTTCTGAATCGTCTCTTCGTACTCCTCATCAAAAGATGCTGCGTTGAATCTGCAGTTGCTTCTACAGCCTTTGTATCCTTTTGGACAGCGTTTAGCACCAGCAGCTTTCAAGATCGTCAGCATTTCTTGGCTGAAAATGATAATTGGTGTTTAGCTGATATTGATATGCTCACTTCTGAAGTGACGCTGCCAAATGTCTAGGAGACTCTCCACGGAGATTCACTTTGTTCGAGTCCGCACCGGCGGAGATGAGGAATTTGACGCACTGAAAACATTCTAATAAGTTCAACTCGCAAGTTTTGGTCGTTAACCTCAAGACTGATTCTTCTAGCGTCTACTAGAGCAGCTGACTTGTGAAGAGCAGTG</canonical>
            <polymorphic>GATCCAGCGCTGGGTTGTTTGAAATTATACCACCATCGATGTATCTATCCTCGGAAGGTTTGAACAAAACTGGTGCGGCTGTTGACCGACGAAGCGCCATCCATAGTGGCATCTCTCTTGGTGTCTCCGGAGCAAGGTCCACAGCTGGTTTGTAGTTTCTAGCCATCTCCAATCGCACTGGAAGTTTTTCTGAGTTAACCGCACTGATCATTAGTCGTGGGAACGGGATGTCCCAGACAGTTCCAGTTCCGAATTGATCTTGAATGAACTTCTCGAGCTGAACTGTATCATAGGGTGGCATGATTCCATCGAAGACCTTGTCTTTGAGAAGCAAATAAGTTTGCTGCATTTCCCGGAGACTCTTTCCAGTCGCCAATCCTGCCATAATCAGAGATCCAGTTGACGTTCCAGCCGACCAATCGAAATACTTAAAGATATCATCTCCCAGACGTTCTTCGATAGCAATAAGAGTTTGGATAATGACCAATCCACGGATACCRCCTCCATCCATAGAGATCAAGTTGACTTTGTTTTTTTTGCACTTTCCAGAGTTCTCCAGATTCTGCTCAATATTCAATCTCTCGGCAGCCGATAGCTCAGTCTTCTCATAATCAGTTTCAATTCCGATGTGAATGTTCTGAATCGTCTCTTCGTACTCCTCATCAAAAGATGCTGCGTTGAATCTGCAGTTGCTTCTACAGCCTTTGTATCCTTTTGGACAGCGTTTAGCACCAGCAGCTTTCAAGATCGTCAGCATTTCTTGGCTGAAAATGATAATTGGTGTTTAGCTGATATTGATATGCTCACTTCTGAAGTGACGCTGCCAAATGTCTAGGAGACTCTCCACGGAGATTCACTTTGTTCGAGTCCGCACCGGCGGAGATGAGGAATTTGACGCACTGAAAACATTCTAATAAGTTCAACTCGCAAGTTTTGGTCGTTAACCTCAAGACTGATTCTTCTAGCGTCTACTAGAGCAGCTGACTTGTGAAGAGCAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>371 299 199 124 7</canonical_bands>
                <polymorphic_bands>670 199 124 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTGTCTTTGAGAAGCAAATAAG</pcr_primer_p1>
		<pcr_primer_p2>AATCTGGAGAACTCTGGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTTGTCTTTGAGAAGCAAATAAGTTTGCTGCATTTCCCGGAGACTCTTTCCAGTCGCCAATCCTGCCATAATCAGAGATCCAGTTGACGTTCCAGCCGACCAATCGAAATACTTAAAGATATCATCTCCCAGACGTTCTTCGATAGCAATAAGAGTTTGGATAATGACCAATCCACGGATACCGCCTCCATCCATAGAGATCAAGTTGACTTTGTTTTTTTTGCACTTTCCAGAGTTCTCCAGATT</canonical_amplicon>
		<polymorphic_amplicon>CTTGTCTTTGAGAAGCAAATAAGTTTGCTGCATTTCCCGGAGACTCTTTCCAGTCGCCAATCCTGCCATAATCAGAGATCCAGTTGACGTTCCAGCCGACCAATCGAAATACTTAAAGATATCATCTCCCAGACGTTCTTCGATAGCAATAAGAGTTTGGATAATGACCAATCCACGGATACCRCCTCCATCCATAGAGATCAAGTTGACTTTGTTTTTTTTGCACTTTCCAGAGTTCTCCAGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37834</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>283548</contig_pos>
        <strand></strand>
        <context>GTTGACTTTG[T/G]TTTTTTTGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TGACCAATCCACGGATACCGCCTCCATCCATAGAGATCAAGTTGACTTTG</left_flank>
        <right_flank>TTTTTTTGCACTTTCCAGAGTTCTCCAGATTCTGCTCAATATTCAATCTC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCATCGATGTATCTATCCTCGGAAGGTTTGAACAAAACTGGTGCGGCTGTTGACCGACGAAGCGCCATCCATAGTGGCATCTCTCTTGGTGTCTCCGGAGCAAGGTCCACAGCTGGTTTGTAGTTTCTAGCCATCTCCAATCGCACTGGAAGTTTTTCTGAGTTAACCGCACTGATCATTAGTCGTGGGAACGGGATGTCCCAGACAGTTCCAGTTCCGAATTGATCTTGAATGAACTTCTCGAGCTGAACTGTATCATAGGGTGGCATGATTCCATCGAAGACCTTGTCTTTGAGAAGCAAATAAGTTTGCTGCATTTCCCGGAGACTCTTTCCAGTCGCCAATCCTGCCATAATCAGAGATCCAGTTGACGTTCCAGCCGACCAATCGAAATACTTAAAGATATCATCTCCCAGACGTTCTTCGATAGCAATAAGAGTTTGGATAATGACCAATCCACGGATACCGCCTCCATCCATAGAGATCAAGTTGACTTTGTTTTTTTTGCACTTTCCAGAGTTCTCCAGATTCTGCTCAATATTCAATCTCTCGGCAGCCGATAGCTCAGTCTTCTCATAATCAGTTTCAATTCCGATGTGAATGTTCTGAATCGTCTCTTCGTACTCCTCATCAAAAGATGCTGCGTTGAATCTGCAGTTGCTTCTACAGCCTTTGTATCCTTTTGGACAGCGTTTAGCACCAGCAGCTTTCAAGATCGTCAGCATTTCTTGGCTGAAAATGATAATTGGTGTTTAGCTGATATTGATATGCTCACTTCTGAAGTGACGCTGCCAAATGTCTAGGAGACTCTCCACGGAGATTCACTTTGTTCGAGTCCGCACCGGCGGAGATGAGGAATTTGACGCACTGAAAACATTCTAATAAGTTCAACTCGCAAGTTTTGGTCGTTAACCTCAAGACTGATTCTTCTAGCGTCTACTAGAGCAGCTGACTTGTGAAGAGCAGTGTTTCCATGACGATCCGTGGCATTCATGTTGG</canonical>
            <polymorphic>ACCATCGATGTATCTATCCTCGGAAGGTTTGAACAAAACTGGTGCGGCTGTTGACCGACGAAGCGCCATCCATAGTGGCATCTCTCTTGGTGTCTCCGGAGCAAGGTCCACAGCTGGTTTGTAGTTTCTAGCCATCTCCAATCGCACTGGAAGTTTTTCTGAGTTAACCGCACTGATCATTAGTCGTGGGAACGGGATGTCCCAGACAGTTCCAGTTCCGAATTGATCTTGAATGAACTTCTCGAGCTGAACTGTATCATAGGGTGGCATGATTCCATCGAAGACCTTGTCTTTGAGAAGCAAATAAGTTTGCTGCATTTCCCGGAGACTCTTTCCAGTCGCCAATCCTGCCATAATCAGAGATCCAGTTGACGTTCCAGCCGACCAATCGAAATACTTAAAGATATCATCTCCCAGACGTTCTTCGATAGCAATAAGAGTTTGGATAATGACCAATCCACGGATACCGCCTCCATCCATAGAGATCAAGTTGACTTTGKTTTTTTTGCACTTTCCAGAGTTCTCCAGATTCTGCTCAATATTCAATCTCTCGGCAGCCGATAGCTCAGTCTTCTCATAATCAGTTTCAATTCCGATGTGAATGTTCTGAATCGTCTCTTCGTACTCCTCATCAAAAGATGCTGCGTTGAATCTGCAGTTGCTTCTACAGCCTTTGTATCCTTTTGGACAGCGTTTAGCACCAGCAGCTTTCAAGATCGTCAGCATTTCTTGGCTGAAAATGATAATTGGTGTTTAGCTGATATTGATATGCTCACTTCTGAAGTGACGCTGCCAAATGTCTAGGAGACTCTCCACGGAGATTCACTTTGTTCGAGTCCGCACCGGCGGAGATGAGGAATTTGACGCACTGAAAACATTCTAATAAGTTCAACTCGCAAGTTTTGGTCGTTAACCTCAAGACTGATTCTTCTAGCGTCTACTAGAGCAGCTGACTTGTGAAGAGCAGTGTTTCCATGACGATCCGTGGCATTCATGTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCAATAAGAGTTTGGATAATGA</pcr_primer_p1>
		<pcr_primer_p2>TACAAAGGCTGTAGAAGCAACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGCAATAAGAGTTTGGATAATGACCAATCCACGGATACCGCCTCCATCCATAGAGATCAAGTTGACTTTGTTTTTTTTGCACTTTCCAGAGTTCTCCAGATTCTGCTCAATATTCAATCTCTCGGCAGCCGATAGCTCAGTCTTCTCATAATCAGTTTCAATTCCGATGTGAATGTTCTGAATCGTCTCTTCGTACTCCTCATCAAAAGATGCTGCGTTGAATCTGCAGTTGCTTCTACAGCCTTTGTA</canonical_amplicon>
		<polymorphic_amplicon>AGCAATAAGAGTTTGGATAATGACCAATCCACGGATACCGCCTCCATCCATAGAGATCAAGTTGACTTTGKTTTTTTTGCACTTTCCAGAGTTCTCCAGATTCTGCTCAATATTCAATCTCTCGGCAGCCGATAGCTCAGTCTTCTCATAATCAGTTTCAATTCCGATGTGAATGTTCTGAATCGTCTCTTCGTACTCCTCATCAAAAGATGCTGCGTTGAATCTGCAGTTGCTTCTACAGCCTTTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37835</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>283636</contig_pos>
        <strand></strand>
        <context>TAATCAGTTT[C/T]AATTCCGATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATATTCAATCTCTCGGCAGCCGATAGCTCAGTCTTCTCATAATCAGTTT</left_flank>
        <right_flank>AATTCCGATGTGAATGTTCTGAATCGTCTCTTCGTACTCCTCATCAAAAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGTCTCCGGAGCAAGGTCCACAGCTGGTTTGTAGTTTCTAGCCATCTCCAATCGCACTGGAAGTTTTTCTGAGTTAACCGCACTGATCATTAGTCGTGGGAACGGGATGTCCCAGACAGTTCCAGTTCCGAATTGATCTTGAATGAACTTCTCGAGCTGAACTGTATCATAGGGTGGCATGATTCCATCGAAGACCTTGTCTTTGAGAAGCAAATAAGTTTGCTGCATTTCCCGGAGACTCTTTCCAGTCGCCAATCCTGCCATAATCAGAGATCCAGTTGACGTTCCAGCCGACCAATCGAAATACTTAAAGATATCATCTCCCAGACGTTCTTCGATAGCAATAAGAGTTTGGATAATGACCAATCCACGGATACCGCCTCCATCCATAGAGATCAAGTTGACTTTGTTTTTTTTGCACTTTCCAGAGTTCTCCAGATTCTGCTCAATATTCAATCTCTCGGCAGCCGATAGCTCAGTCTTCTCATAATCAGTTTCAATTCCGATGTGAATGTTCTGAATCGTCTCTTCGTACTCCTCATCAAAAGATGCTGCGTTGAATCTGCAGTTGCTTCTACAGCCTTTGTATCCTTTTGGACAGCGTTTAGCACCAGCAGCTTTCAAGATCGTCAGCATTTCTTGGCTGAAAATGATAATTGGTGTTTAGCTGATATTGATATGCTCACTTCTGAAGTGACGCTGCCAAATGTCTAGGAGACTCTCCACGGAGATTCACTTTGTTCGAGTCCGCACCGGCGGAGATGAGGAATTTGACGCACTGAAAACATTCTAATAAGTTCAACTCGCAAGTTTTGGTCGTTAACCTCAAGACTGATTCTTCTAGCGTCTACTAGAGCAGCTGACTTGTGAAGAGCAGTGTTTCCATGACGATCCGTGGCATTCATGTTGGCTCCGTGAGCATAGAGTGTGACCAGAAGTGGGAGTAGATCGGGCTTCCTAGTAGTGATAAACAACAACAAGGCCGTCTCTCCAGCATT</canonical>
            <polymorphic>GGTGTCTCCGGAGCAAGGTCCACAGCTGGTTTGTAGTTTCTAGCCATCTCCAATCGCACTGGAAGTTTTTCTGAGTTAACCGCACTGATCATTAGTCGTGGGAACGGGATGTCCCAGACAGTTCCAGTTCCGAATTGATCTTGAATGAACTTCTCGAGCTGAACTGTATCATAGGGTGGCATGATTCCATCGAAGACCTTGTCTTTGAGAAGCAAATAAGTTTGCTGCATTTCCCGGAGACTCTTTCCAGTCGCCAATCCTGCCATAATCAGAGATCCAGTTGACGTTCCAGCCGACCAATCGAAATACTTAAAGATATCATCTCCCAGACGTTCTTCGATAGCAATAAGAGTTTGGATAATGACCAATCCACGGATACCGCCTCCATCCATAGAGATCAAGTTGACTTTGTTTTTTTTGCACTTTCCAGAGTTCTCCAGATTCTGCTCAATATTCAATCTCTCGGCAGCCGATAGCTCAGTCTTCTCATAATCAGTTTYAATTCCGATGTGAATGTTCTGAATCGTCTCTTCGTACTCCTCATCAAAAGATGCTGCGTTGAATCTGCAGTTGCTTCTACAGCCTTTGTATCCTTTTGGACAGCGTTTAGCACCAGCAGCTTTCAAGATCGTCAGCATTTCTTGGCTGAAAATGATAATTGGTGTTTAGCTGATATTGATATGCTCACTTCTGAAGTGACGCTGCCAAATGTCTAGGAGACTCTCCACGGAGATTCACTTTGTTCGAGTCCGCACCGGCGGAGATGAGGAATTTGACGCACTGAAAACATTCTAATAAGTTCAACTCGCAAGTTTTGGTCGTTAACCTCAAGACTGATTCTTCTAGCGTCTACTAGAGCAGCTGACTTGTGAAGAGCAGTGTTTCCATGACGATCCGTGGCATTCATGTTGGCTCCGTGAGCATAGAGTGTGACCAGAAGTGGGAGTAGATCGGGCTTCCTAGTAGTGATAAACAACAACAAGGCCGTCTCTCCAGCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGATTCTGCTCAATATTCAATC</pcr_primer_p1>
		<pcr_primer_p2>TGAGCATATCAATATCAGCTAAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGATTCTGCTCAATATTCAATCTCTCGGCAGCCGATAGCTCAGTCTTCTCATAATCAGTTTCAATTCCGATGTGAATGTTCTGAATCGTCTCTTCGTACTCCTCATCAAAAGATGCTGCGTTGAATCTGCAGTTGCTTCTACAGCCTTTGTATCCTTTTGGACAGCGTTTAGCACCAGCAGCTTTCAAGATCGTCAGCATTTCTTGGCTGAAAATGATAATTGGTGTTTAGCTGATATTGATATGCTCA</canonical_amplicon>
		<polymorphic_amplicon>CAGATTCTGCTCAATATTCAATCTCTCGGCAGCCGATAGCTCAGTCTTCTCATAATCAGTTTYAATTCCGATGTGAATGTTCTGAATCGTCTCTTCGTACTCCTCATCAAAAGATGCTGCGTTGAATCTGCAGTTGCTTCTACAGCCTTTGTATCCTTTTGGACAGCGTTTAGCACCAGCAGCTTTCAAGATCGTCAGCATTTCTTGGCTGAAAATGATAATTGGTGTTTAGCTGATATTGATATGCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37836</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>283851</contig_pos>
        <strand></strand>
        <context>CCAAATGTCT[A/C]GGAGACTCTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTAGCTGATATTGATATGCTCACTTCTGAAGTGACGCTGCCAAATGTCT</left_flank>
        <right_flank>GGAGACTCTCCACGGAGATTCACTTTGTTCGAGTCCGCACCGGCGGAGAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAGTTTGCTGCATTTCCCGGAGACTCTTTCCAGTCGCCAATCCTGCCATAATCAGAGATCCAGTTGACGTTCCAGCCGACCAATCGAAATACTTAAAGATATCATCTCCCAGACGTTCTTCGATAGCAATAAGAGTTTGGATAATGACCAATCCACGGATACCGCCTCCATCCATAGAGATCAAGTTGACTTTGTTTTTTTTGCACTTTCCAGAGTTCTCCAGATTCTGCTCAATATTCAATCTCTCGGCAGCCGATAGCTCAGTCTTCTCATAATCAGTTTCAATTCCGATGTGAATGTTCTGAATCGTCTCTTCGTACTCCTCATCAAAAGATGCTGCGTTGAATCTGCAGTTGCTTCTACAGCCTTTGTATCCTTTTGGACAGCGTTTAGCACCAGCAGCTTTCAAGATCGTCAGCATTTCTTGGCTGAAAATGATAATTGGTGTTTAGCTGATATTGATATGCTCACTTCTGAAGTGACGCTGCCAAATGTCTAGGAGACTCTCCACGGAGATTCACTTTGTTCGAGTCCGCACCGGCGGAGATGAGGAATTTGACGCACTGAAAACATTCTAATAAGTTCAACTCGCAAGTTTTGGTCGTTAACCTCAAGACTGATTCTTCTAGCGTCTACTAGAGCAGCTGACTTGTGAAGAGCAGTGTTTCCATGACGATCCGTGGCATTCATGTTGGCTCCGTGAGCATAGAGTGTGACCAGAAGTGGGAGTAGATCGGGCTTCCTAGTAGTGATAAACAACAACAAGGCCGTCTCTCCAGCATTGTTGGTCACATCAATATCCAATCCCAACTCCACTTTCTTATTGAGCAACGCATTTAACGACTCCTTGTACAATGCAACATGAATCGCACTGTTTCCGAGTGCGTCACGCTCGTGCGCAAGTTCTGGTTTGTCCATCAACACCACCTCCACCACACTTTGCGCATTCTTTGACGTCATCGCGACGAACAATTCATTCCGATCTCCGCGGGTGAATT</canonical>
            <polymorphic>ATAAGTTTGCTGCATTTCCCGGAGACTCTTTCCAGTCGCCAATCCTGCCATAATCAGAGATCCAGTTGACGTTCCAGCCGACCAATCGAAATACTTAAAGATATCATCTCCCAGACGTTCTTCGATAGCAATAAGAGTTTGGATAATGACCAATCCACGGATACCGCCTCCATCCATAGAGATCAAGTTGACTTTGTTTTTTTTGCACTTTCCAGAGTTCTCCAGATTCTGCTCAATATTCAATCTCTCGGCAGCCGATAGCTCAGTCTTCTCATAATCAGTTTCAATTCCGATGTGAATGTTCTGAATCGTCTCTTCGTACTCCTCATCAAAAGATGCTGCGTTGAATCTGCAGTTGCTTCTACAGCCTTTGTATCCTTTTGGACAGCGTTTAGCACCAGCAGCTTTCAAGATCGTCAGCATTTCTTGGCTGAAAATGATAATTGGTGTTTAGCTGATATTGATATGCTCACTTCTGAAGTGACGCTGCCAAATGTCTMGGAGACTCTCCACGGAGATTCACTTTGTTCGAGTCCGCACCGGCGGAGATGAGGAATTTGACGCACTGAAAACATTCTAATAAGTTCAACTCGCAAGTTTTGGTCGTTAACCTCAAGACTGATTCTTCTAGCGTCTACTAGAGCAGCTGACTTGTGAAGAGCAGTGTTTCCATGACGATCCGTGGCATTCATGTTGGCTCCGTGAGCATAGAGTGTGACCAGAAGTGGGAGTAGATCGGGCTTCCTAGTAGTGATAAACAACAACAAGGCCGTCTCTCCAGCATTGTTGGTCACATCAATATCCAATCCCAACTCCACTTTCTTATTGAGCAACGCATTTAACGACTCCTTGTACAATGCAACATGAATCGCACTGTTTCCGAGTGCGTCACGCTCGTGCGCAAGTTCTGGTTTGTCCATCAACACCACCTCCACCACACTTTGCGCATTCTTTGACGTCATCGCGACGAACAATTCATTCCGATCTCCGCGGGTGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>498 255 130 107 10</canonical_bands>
                <polymorphic_bands>628 255 107 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGCTTCTACAGCCTTTGTAT</pcr_primer_p1>
		<pcr_primer_p2>AAACTTGCGAGTTGAACTTATTA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GTTGCTTCTACAGCCTTTGTATCCTTTTGGACAGCGTTTAGCACCAGCAGCTTTCAAGATCGTCAGCATTTCTTGGCTGAAAATGATAATTGGTGTTTAGCTGATATTGATATGCTCACTTCTGAAGTGACGCTGCCAAATGTCTAGGAGACTCTCCACGGAGATTCACTTTGTTCGAGTCCGCACCGGCGGAGATGAGGAATTTGACGCACTGAAAACATTCTAATAAGTTCAACTCGCAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>GTTGCTTCTACAGCCTTTGTATCCTTTTGGACAGCGTTTAGCACCAGCAGCTTTCAAGATCGTCAGCATTTCTTGGCTGAAAATGATAATTGGTGTTTAGCTGATATTGATATGCTCACTTCTGAAGTGACGCTGCCAAATGTCTMGGAGACTCTCCACGGAGATTCACTTTGTTCGAGTCCGCACCGGCGGAGATGAGGAATTTGACGCACTGAAAACATTCTAATAAGTTCAACTCGCAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37837</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>297978</contig_pos>
        <strand></strand>
        <context>TCGTAAAACT[T/C]CCCGTTTTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCATTTCAAGAATAATATTCCCCGACGATAATTGGCGAAGTCGTAAAACT</left_flank>
        <right_flank>CCCGTTTTGGCTCTCATCACATAATGACATAATTACTTTCTTAGGGTTTG</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCTTGAAACAACTGCACTTGGACTTCATTGAGATTGATGGTGATCAATTTTGATAGACATGCAATCAGTTGTGTTGATCAGATGGCATGAAAAGACAACAATTGAGGGACCGCCCTCCTCTGTCTTCTATTCTACGACCACCCCAGTGGGCGGTCTAGGGTGGCATACGGTAGTTAATTGTTTTCGGACGAGCGGGGGGCCAACAATCTGGTAGGCGGAGTCAGTAAAAAGTGAGAGGGAGACTGAGGACCCTTCGACTCTACACTTTTTGATTTCCGTGTCCTAATTGATGTGGTTTCTGATCTATAATTTTTAAATATTTCCTACTTTTTCAAACTTTTGAGTATAGTTTAGTAATATTCTGTCAATTTTGTATCTTAACTCAGGCCAATAGTAATAAGCAGTAATAAGCAGCTTTCCTCCGGAGAGCACCACACCAATAAAAATGTCATTTCAAGAATAATATTCCCCGACGATAATTGGCGAAGTCGTAAAACTTCCCGTTTTGGCTCTCATCACATAATGACATAATTACTTTCTTAGGGTTTGAAAGTTAGAGAGAAAGTGAGCAACAACCCCTTTATACCCCCAAAACAATTATGTTTTGTGTGTCTAGAAGTGGCGAAGGCTGGAAATTTCAACAATACCAACTTCATTTAGTTCCAATTTCCTTTCCAGGCATCGTTGCTTTTCTCTTTGTTGTTGCTTTTTGTCTTTGCCTTCTGAATTTCTTCATTCACCTCCCCATCAGCTGAATCAGCTAATGACGACGATATTGGCGCCTATAAATGGAATCGATGTCACATGGGCAAGGTGCTAATGTCATTAAGGAATCCGCAATAAAACGCATTGGTCAACACATCTGCCTTGAGCTCCTCCTCCTTGAAGATATTCCAGCCTACCGTAAACCCGCCTGATTTCTGTTTGCTTTGCAATTTATCCCATCCTTAAGCGATGCGCATCCACTTCCCGCCCTTTTTATACTTCCTGTCGTCGTGG</canonical>
            <polymorphic>CGCTTGAAACAACTGCACTTGGACTTCATTGAGATTGATGGTGATCAATTTTGATAGACATGCAATCAGTTGTGTTGATCAGATGGCATGAAAAGACAACAATTGAGGGACCGCCCTCCTCTGTCTTCTATTCTACGACCACCCCAGTGGGCGGTCTAGGGTGGCATACGGTAGTTAATTGTTTTCGGACGAGCGGGGGGCCAACAATCTGGTAGGCGGAGTCAGTAAAAAGTGAGAGGGAGACTGAGGACCCTTCGACTCTACACTTTTTGATTTCCGTGTCCTAATTGATGTGGTTTCTGATCTATAATTTTTAAATATTTCCTACTTTTTCAAACTTTTGAGTATAGTTTAGTAATATTCTGTCAATTTTGTATCTTAACTCAGGCCAATAGTAATAAGCAGTAATAAGCAGCTTTCCTCCGGAGAGCACCACACCAATAAAAATGTCATTTCAAGAATAATATTCCCCGACGATAATTGGCGAAGTCGTAAAACTYCCCGTTTTGGCTCTCATCACATAATGACATAATTACTTTCTTAGGGTTTGAAAGTTAGAGAGAAAGTGAGCAACAACCCCTTTATACCCCCAAAACAATTATGTTTTGTGTGTCTAGAAGTGGCGAAGGCTGGAAATTTCAACAATACCAACTTCATTTAGTTCCAATTTCCTTTCCAGGCATCGTTGCTTTTCTCTTTGTTGTTGCTTTTTGTCTTTGCCTTCTGAATTTCTTCATTCACCTCCCCATCAGCTGAATCAGCTAATGACGACGATATTGGCGCCTATAAATGGAATCGATGTCACATGGGCAAGGTGCTAATGTCATTAAGGAATCCGCAATAAAACGCATTGGTCAACACATCTGCCTTGAGCTCCTCCTCCTTGAAGATATTCCAGCCTACCGTAAACCCGCCTGATTTCTGTTTGCTTTGCAATTTATCCCATCCTTAAGCGATGCGCATCCACTTCCCGCCCTTTTTATACTTCCTGTCGTCGTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATCTTAACTCAGGCCAATAG</pcr_primer_p1>
		<pcr_primer_p2>CCACTTCTAGACACACAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGTATCTTAACTCAGGCCAATAGTAATAAGCAGTAATAAGCAGCTTTCCTCCGGAGAGCACCACACCAATAAAAATGTCATTTCAAGAATAATATTCCCCGACGATAATTGGCGAAGTCGTAAAACTTCCCGTTTTGGCTCTCATCACATAATGACATAATTACTTTCTTAGGGTTTGAAAGTTAGAGAGAAAGTGAGCAACAACCCCTTTATACCCCCAAAACAATTATGTTTTGTGTGTCTAGAAGTGG</canonical_amplicon>
		<polymorphic_amplicon>TGTATCTTAACTCAGGCCAATAGTAATAAGCAGTAATAAGCAGCTTTCCTCCGGAGAGCACCACACCAATAAAAATGTCATTTCAAGAATAATATTCCCCGACGATAATTGGCGAAGTCGTAAAACTYCCCGTTTTGGCTCTCATCACATAATGACATAATTACTTTCTTAGGGTTTGAAAGTTAGAGAGAAAGTGAGCAACAACCCCTTTATACCCCCAAAACAATTATGTTTTGTGTGTCTAGAAGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37838</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>298027</contig_pos>
        <strand></strand>
        <context>TCTTAGGGTT[T/A]GAAAGTTAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTCCCGTTTTGGCTCTCATCACATAATGACATAATTACTTTCTTAGGGTT</left_flank>
        <right_flank>GAAAGTTAGAGAGAAAGTGAGCAACAACCCCTTTATACCCCCAAAACAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGATAGACATGCAATCAGTTGTGTTGATCAGATGGCATGAAAAGACAACAATTGAGGGACCGCCCTCCTCTGTCTTCTATTCTACGACCACCCCAGTGGGCGGTCTAGGGTGGCATACGGTAGTTAATTGTTTTCGGACGAGCGGGGGGCCAACAATCTGGTAGGCGGAGTCAGTAAAAAGTGAGAGGGAGACTGAGGACCCTTCGACTCTACACTTTTTGATTTCCGTGTCCTAATTGATGTGGTTTCTGATCTATAATTTTTAAATATTTCCTACTTTTTCAAACTTTTGAGTATAGTTTAGTAATATTCTGTCAATTTTGTATCTTAACTCAGGCCAATAGTAATAAGCAGTAATAAGCAGCTTTCCTCCGGAGAGCACCACACCAATAAAAATGTCATTTCAAGAATAATATTCCCCGACGATAATTGGCGAAGTCGTAAAACTTCCCGTTTTGGCTCTCATCACATAATGACATAATTACTTTCTTAGGGTTTGAAAGTTAGAGAGAAAGTGAGCAACAACCCCTTTATACCCCCAAAACAATTATGTTTTGTGTGTCTAGAAGTGGCGAAGGCTGGAAATTTCAACAATACCAACTTCATTTAGTTCCAATTTCCTTTCCAGGCATCGTTGCTTTTCTCTTTGTTGTTGCTTTTTGTCTTTGCCTTCTGAATTTCTTCATTCACCTCCCCATCAGCTGAATCAGCTAATGACGACGATATTGGCGCCTATAAATGGAATCGATGTCACATGGGCAAGGTGCTAATGTCATTAAGGAATCCGCAATAAAACGCATTGGTCAACACATCTGCCTTGAGCTCCTCCTCCTTGAAGATATTCCAGCCTACCGTAAACCCGCCTGATTTCTGTTTGCTTTGCAATTTATCCCATCCTTAAGCGATGCGCATCCACTTCCCGCCCTTTTTATACTTCCTGTCGTCGTGGTGTGCTTCTTTTTGAAGCTCGAAGAGCCTATTAATTACATAAGAGTATC</canonical>
            <polymorphic>TTTGATAGACATGCAATCAGTTGTGTTGATCAGATGGCATGAAAAGACAACAATTGAGGGACCGCCCTCCTCTGTCTTCTATTCTACGACCACCCCAGTGGGCGGTCTAGGGTGGCATACGGTAGTTAATTGTTTTCGGACGAGCGGGGGGCCAACAATCTGGTAGGCGGAGTCAGTAAAAAGTGAGAGGGAGACTGAGGACCCTTCGACTCTACACTTTTTGATTTCCGTGTCCTAATTGATGTGGTTTCTGATCTATAATTTTTAAATATTTCCTACTTTTTCAAACTTTTGAGTATAGTTTAGTAATATTCTGTCAATTTTGTATCTTAACTCAGGCCAATAGTAATAAGCAGTAATAAGCAGCTTTCCTCCGGAGAGCACCACACCAATAAAAATGTCATTTCAAGAATAATATTCCCCGACGATAATTGGCGAAGTCGTAAAACTTCCCGTTTTGGCTCTCATCACATAATGACATAATTACTTTCTTAGGGTTWGAAAGTTAGAGAGAAAGTGAGCAACAACCCCTTTATACCCCCAAAACAATTATGTTTTGTGTGTCTAGAAGTGGCGAAGGCTGGAAATTTCAACAATACCAACTTCATTTAGTTCCAATTTCCTTTCCAGGCATCGTTGCTTTTCTCTTTGTTGTTGCTTTTTGTCTTTGCCTTCTGAATTTCTTCATTCACCTCCCCATCAGCTGAATCAGCTAATGACGACGATATTGGCGCCTATAAATGGAATCGATGTCACATGGGCAAGGTGCTAATGTCATTAAGGAATCCGCAATAAAACGCATTGGTCAACACATCTGCCTTGAGCTCCTCCTCCTTGAAGATATTCCAGCCTACCGTAAACCCGCCTGATTTCTGTTTGCTTTGCAATTTATCCCATCCTTAAGCGATGCGCATCCACTTCCCGCCCTTTTTATACTTCCTGTCGTCGTGGTGTGCTTCTTTTTGAAGCTCGAAGAGCCTATTAATTACATAAGAGTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTATCTTAACTCAGGCCAATAG</pcr_primer_p1>
		<pcr_primer_p2>CCACTTCTAGACACACAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGTATCTTAACTCAGGCCAATAGTAATAAGCAGTAATAAGCAGCTTTCCTCCGGAGAGCACCACACCAATAAAAATGTCATTTCAAGAATAATATTCCCCGACGATAATTGGCGAAGTCGTAAAACTTCCCGTTTTGGCTCTCATCACATAATGACATAATTACTTTCTTAGGGTTTGAAAGTTAGAGAGAAAGTGAGCAACAACCCCTTTATACCCCCAAAACAATTATGTTTTGTGTGTCTAGAAGTGG</canonical_amplicon>
		<polymorphic_amplicon>TGTATCTTAACTCAGGCCAATAGTAATAAGCAGTAATAAGCAGCTTTCCTCCGGAGAGCACCACACCAATAAAAATGTCATTTCAAGAATAATATTCCCCGACGATAATTGGCGAAGTCGTAAAACTTCCCGTTTTGGCTCTCATCACATAATGACATAATTACTTTCTTAGGGTTWGAAAGTTAGAGAGAAAGTGAGCAACAACCCCTTTATACCCCCAAAACAATTATGTTTTGTGTGTCTAGAAGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37839</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>298316</contig_pos>
        <strand></strand>
        <context>TAAGGAATCC[G/A]CAATAAAACG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAATGGAATCGATGTCACATGGGCAAGGTGCTAATGTCATTAAGGAATCC</left_flank>
        <right_flank>CAATAAAACGCATTGGTCAACACATCTGCCTTGAGCTCCTCCTCCTTGAA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGAGTATAGTTTAGTAATATTCTGTCAATTTTGTATCTTAACTCAGGCCAATAGTAATAAGCAGTAATAAGCAGCTTTCCTCCGGAGAGCACCACACCAATAAAAATGTCATTTCAAGAATAATATTCCCCGACGATAATTGGCGAAGTCGTAAAACTTCCCGTTTTGGCTCTCATCACATAATGACATAATTACTTTCTTAGGGTTTGAAAGTTAGAGAGAAAGTGAGCAACAACCCCTTTATACCCCCAAAACAATTATGTTTTGTGTGTCTAGAAGTGGCGAAGGCTGGAAATTTCAACAATACCAACTTCATTTAGTTCCAATTTCCTTTCCAGGCATCGTTGCTTTTCTCTTTGTTGTTGCTTTTTGTCTTTGCCTTCTGAATTTCTTCATTCACCTCCCCATCAGCTGAATCAGCTAATGACGACGATATTGGCGCCTATAAATGGAATCGATGTCACATGGGCAAGGTGCTAATGTCATTAAGGAATCCGCAATAAAACGCATTGGTCAACACATCTGCCTTGAGCTCCTCCTCCTTGAAGATATTCCAGCCTACCGTAAACCCGCCTGATTTCTGTTTGCTTTGCAATTTATCCCATCCTTAAGCGATGCGCATCCACTTCCCGCCCTTTTTATACTTCCTGTCGTCGTGGTGTGCTTCTTTTTGAAGCTCGAAGAGCCTATTAATTACATAAGAGTATCCTATTTTTCCTACTAAATCCTCCCCTCGCCTCAATTATTATTACGGTAACATATGTTGTTACGCATTAGATTCGTTGCTTTCCTACGTTCTCTTTCTCTAATGCAGATTATTTTTTTATGATCAATTTTCTTTTAATCCTCCGCGTAATGAATCTTGTTGCCTCATCTCTTTTTTGATTAGTATTTTATAAATCTATCTCTTCTAGCAGGATAGACAATGGTGTCTAAAGCAGAGAAACCTAAGCAATCCGGAATGTTCAGTGTGGAAAGTCTTCTGGAGACGACGACT</canonical>
            <polymorphic>TTTTGAGTATAGTTTAGTAATATTCTGTCAATTTTGTATCTTAACTCAGGCCAATAGTAATAAGCAGTAATAAGCAGCTTTCCTCCGGAGAGCACCACACCAATAAAAATGTCATTTCAAGAATAATATTCCCCGACGATAATTGGCGAAGTCGTAAAACTTCCCGTTTTGGCTCTCATCACATAATGACATAATTACTTTCTTAGGGTTTGAAAGTTAGAGAGAAAGTGAGCAACAACCCCTTTATACCCCCAAAACAATTATGTTTTGTGTGTCTAGAAGTGGCGAAGGCTGGAAATTTCAACAATACCAACTTCATTTAGTTCCAATTTCCTTTCCAGGCATCGTTGCTTTTCTCTTTGTTGTTGCTTTTTGTCTTTGCCTTCTGAATTTCTTCATTCACCTCCCCATCAGCTGAATCAGCTAATGACGACGATATTGGCGCCTATAAATGGAATCGATGTCACATGGGCAAGGTGCTAATGTCATTAAGGAATCCRCAATAAAACGCATTGGTCAACACATCTGCCTTGAGCTCCTCCTCCTTGAAGATATTCCAGCCTACCGTAAACCCGCCTGATTTCTGTTTGCTTTGCAATTTATCCCATCCTTAAGCGATGCGCATCCACTTCCCGCCCTTTTTATACTTCCTGTCGTCGTGGTGTGCTTCTTTTTGAAGCTCGAAGAGCCTATTAATTACATAAGAGTATCCTATTTTTCCTACTAAATCCTCCCCTCGCCTCAATTATTATTACGGTAACATATGTTGTTACGCATTAGATTCGTTGCTTTCCTACGTTCTCTTTCTCTAATGCAGATTATTTTTTTATGATCAATTTTCTTTTAATCCTCCGCGTAATGAATCTTGTTGCCTCATCTCTTTTTTGATTAGTATTTTATAAATCTATCTCTTCTAGCAGGATAGACAATGGTGTCTAAAGCAGAGAAACCTAAGCAATCCGGAATGTTCAGTGTGGAAAGTCTTCTGGAGACGACGACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>498 219 148 75 60</canonical_bands>
                <polymorphic_bands>573 219 148 60</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCAGCTAATGACGACGATA</pcr_primer_p1>
		<pcr_primer_p2>ACGACGACAGGAAGTATAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AATCAGCTAATGACGACGATATTGGCGCCTATAAATGGAATCGATGTCACATGGGCAAGGTGCTAATGTCATTAAGGAATCCGCAATAAAACGCATTGGTCAACACATCTGCCTTGAGCTCCTCCTCCTTGAAGATATTCCAGCCTACCGTAAACCCGCCTGATTTCTGTTTGCTTTGCAATTTATCCCATCCTTAAGCGATGCGCATCCACTTCCCGCCCTTTTTATACTTCCTGTCGTCGT</canonical_amplicon>
		<polymorphic_amplicon>AATCAGCTAATGACGACGATATTGGCGCCTATAAATGGAATCGATGTCACATGGGCAAGGTGCTAATGTCATTAAGGAATCCRCAATAAAACGCATTGGTCAACACATCTGCCTTGAGCTCCTCCTCCTTGAAGATATTCCAGCCTACCGTAAACCCGCCTGATTTCTGTTTGCTTTGCAATTTATCCCATCCTTAAGCGATGCGCATCCACTTCCCGCCCTTTTTATACTTCCTGTCGTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37840</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>298373</contig_pos>
        <strand></strand>
        <context>TGAAGATATT[C/T]CAGCCTACCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACGCATTGGTCAACACATCTGCCTTGAGCTCCTCCTCCTTGAAGATATT</left_flank>
        <right_flank>CAGCCTACCGTAAACCCGCCTGATTTCTGTTTGCTTTGCAATTTATCCCA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATAAGCAGTAATAAGCAGCTTTCCTCCGGAGAGCACCACACCAATAAAAATGTCATTTCAAGAATAATATTCCCCGACGATAATTGGCGAAGTCGTAAAACTTCCCGTTTTGGCTCTCATCACATAATGACATAATTACTTTCTTAGGGTTTGAAAGTTAGAGAGAAAGTGAGCAACAACCCCTTTATACCCCCAAAACAATTATGTTTTGTGTGTCTAGAAGTGGCGAAGGCTGGAAATTTCAACAATACCAACTTCATTTAGTTCCAATTTCCTTTCCAGGCATCGTTGCTTTTCTCTTTGTTGTTGCTTTTTGTCTTTGCCTTCTGAATTTCTTCATTCACCTCCCCATCAGCTGAATCAGCTAATGACGACGATATTGGCGCCTATAAATGGAATCGATGTCACATGGGCAAGGTGCTAATGTCATTAAGGAATCCGCAATAAAACGCATTGGTCAACACATCTGCCTTGAGCTCCTCCTCCTTGAAGATATTCCAGCCTACCGTAAACCCGCCTGATTTCTGTTTGCTTTGCAATTTATCCCATCCTTAAGCGATGCGCATCCACTTCCCGCCCTTTTTATACTTCCTGTCGTCGTGGTGTGCTTCTTTTTGAAGCTCGAAGAGCCTATTAATTACATAAGAGTATCCTATTTTTCCTACTAAATCCTCCCCTCGCCTCAATTATTATTACGGTAACATATGTTGTTACGCATTAGATTCGTTGCTTTCCTACGTTCTCTTTCTCTAATGCAGATTATTTTTTTATGATCAATTTTCTTTTAATCCTCCGCGTAATGAATCTTGTTGCCTCATCTCTTTTTTGATTAGTATTTTATAAATCTATCTCTTCTAGCAGGATAGACAATGGTGTCTAAAGCAGAGAAACCTAAGCAATCCGGAATGTTCAGTGTGGAAAGTCTTCTGGAGACGACGACTCCACAAAAAAGTTCTGTCAAAGATGAGAATCTGTTGAAACCTCCTGCTCCAATAACG</canonical>
            <polymorphic>TAATAAGCAGTAATAAGCAGCTTTCCTCCGGAGAGCACCACACCAATAAAAATGTCATTTCAAGAATAATATTCCCCGACGATAATTGGCGAAGTCGTAAAACTTCCCGTTTTGGCTCTCATCACATAATGACATAATTACTTTCTTAGGGTTTGAAAGTTAGAGAGAAAGTGAGCAACAACCCCTTTATACCCCCAAAACAATTATGTTTTGTGTGTCTAGAAGTGGCGAAGGCTGGAAATTTCAACAATACCAACTTCATTTAGTTCCAATTTCCTTTCCAGGCATCGTTGCTTTTCTCTTTGTTGTTGCTTTTTGTCTTTGCCTTCTGAATTTCTTCATTCACCTCCCCATCAGCTGAATCAGCTAATGACGACGATATTGGCGCCTATAAATGGAATCGATGTCACATGGGCAAGGTGCTAATGTCATTAAGGAATCCGCAATAAAACGCATTGGTCAACACATCTGCCTTGAGCTCCTCCTCCTTGAAGATATTYCAGCCTACCGTAAACCCGCCTGATTTCTGTTTGCTTTGCAATTTATCCCATCCTTAAGCGATGCGCATCCACTTCCCGCCCTTTTTATACTTCCTGTCGTCGTGGTGTGCTTCTTTTTGAAGCTCGAAGAGCCTATTAATTACATAAGAGTATCCTATTTTTCCTACTAAATCCTCCCCTCGCCTCAATTATTATTACGGTAACATATGTTGTTACGCATTAGATTCGTTGCTTTCCTACGTTCTCTTTCTCTAATGCAGATTATTTTTTTATGATCAATTTTCTTTTAATCCTCCGCGTAATGAATCTTGTTGCCTCATCTCTTTTTTGATTAGTATTTTATAAATCTATCTCTTCTAGCAGGATAGACAATGGTGTCTAAAGCAGAGAAACCTAAGCAATCCGGAATGTTCAGTGTGGAAAGTCTTCTGGAGACGACGACTCCACAAAAAAGTTCTGTCAAAGATGAGAATCTGTTGAAACCTCCTGCTCCAATAACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>429 335 160 76</canonical_bands>
                <polymorphic_bands>589 335 76</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCAGCTAATGACGACGATA</pcr_primer_p1>
		<pcr_primer_p2>ACGACGACAGGAAGTATAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AATCAGCTAATGACGACGATATTGGCGCCTATAAATGGAATCGATGTCACATGGGCAAGGTGCTAATGTCATTAAGGAATCCGCAATAAAACGCATTGGTCAACACATCTGCCTTGAGCTCCTCCTCCTTGAAGATATTCCAGCCTACCGTAAACCCGCCTGATTTCTGTTTGCTTTGCAATTTATCCCATCCTTAAGCGATGCGCATCCACTTCCCGCCCTTTTTATACTTCCTGTCGTCGT</canonical_amplicon>
		<polymorphic_amplicon>AATCAGCTAATGACGACGATATTGGCGCCTATAAATGGAATCGATGTCACATGGGCAAGGTGCTAATGTCATTAAGGAATCCGCAATAAAACGCATTGGTCAACACATCTGCCTTGAGCTCCTCCTCCTTGAAGATATTYCAGCCTACCGTAAACCCGCCTGATTTCTGTTTGCTTTGCAATTTATCCCATCCTTAAGCGATGCGCATCCACTTCCCGCCCTTTTTATACTTCCTGTCGTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37841</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>299391</contig_pos>
        <strand>+</strand>
        <context>TTCAATCCAA[A/G]CAGTATTTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGTTTTCCACGCAGCAACTTATTTCCCTGGAGCGAAAATTTCAATCCAA</left_flank>
        <right_flank>CAGTATTTGTCGATTGCCGAGCGTGCCGAGTTCAGCGCGTCGTTGCAATT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTACCAGGACTGCATCATATGGCTCCATACTTTGGAGCGCAACTTGACCCGGTTATGATTTATTTTTCACAGACTGGGTTAGTCCTTTTCCTTGTCCTCTAATGTGTCTTTTCAAGGCTTACCTAGGTTAAATACATGTTCCCAATTAGAAGATTAGTATAGTAACATCCGTCTTTCCCATCTAATCCTAAGCCCCCTTTCAGTAACCGTCTGCCTGTCATGAGTTCTGACAGCTCACCGGAATCCTCTGCCTCATCGCCACTGTCCATGCAACATCACACCCTTCCATGGCTATCATCCCAACGAGAGGATTCACCGAGTACGCCCCAACAATTCTTAATTGGAAATTCTAGAAACTCTAATTTACAGCCAGCGACGATGCGAAAATCCAAATCGGTCTCACCAAGTGCATGTTGCGGAAGCATAAAAACAATCGAAAGCCTCGTACCCCGTTTTCCACGCAGCAACTTATTTCCCTGGAGCGAAAATTTCAATCCAAACAGTATTTGTCGATTGCCGAGCGTGCCGAGTTCAGCGCGTCGTTGCAATTAACGGAGACGCAAGTCAAGATATGGTTCCAGGTTAGTCAATCTGACAGTATCCCCACACAAACGTAGATCATAAAATAGATCATAATCAAATCAATCGGCACGCGTATTTCATATAATTATAGTGTTTGCCGTTCCTTGATGCATAGATAACAGCCATATTACGACCTTCACGCCTTTCTGTAACGTTATAGATCCCAAGGCGTGATTTTGTGCACCTGGTGTTCCTAATAAGATGGTATCTATGAAAGGAAAGAGCCGACTTTTTTGCTCATCCATTTTTTTGCGAGATCTATAGATACCTTAAAAGTGACTAACAATAACTGACACTTTCCACTCATCAACCGACTGTTGTGCCAGCTGTCTTTTATCTCGTGAGGAGGCAATACAGTACTCCATACTTGATACATTTTAAAGGGGTCCAGATGATGGCGCGCGCGCGGTTAATTGAC</canonical>
            <polymorphic>CTACCAGGACTGCATCATATGGCTCCATACTTTGGAGCGCAACTTGACCCGGTTATGATTTATTTTTCACAGACTGGGTTAGTCCTTTTCCTTGTCCTCTAATGTGTCTTTTCAAGGCTTACCTAGGTTAAATACATGTTCCCAATTAGAAGATTAGTATAGTAACATCCGTCTTTCCCATCTAATCCTAAGCCCCCTTTCAGTAACCGTCTGCCTGTCATGAGTTCTGACAGCTCACCGGAATCCTCTGCCTCATCGCCACTGTCCATGCAACATCACACCCTTCCATGGCTATCATCCCAACGAGAGGATTCACCGAGTACGCCCCAACAATTCTTAATTGGAAATTCTAGAAACTCTAATTTACAGCCAGCGACGATGCGAAAATCCAAATCGGTCTCACCAAGTGCATGTTGCGGAAGCATAAAAACAATCGAAAGCCTCGTACCCCGTTTTCCACGCAGCAACTTATTTCCCTGGAGCGAAAATTTCAATCCAARCAGTATTTGTCGATTGCCGAGCGTGCCGAGTTCAGCGCGTCGTTGCAATTAACGGAGACGCAAGTCAAGATATGGTTCCAGGTTAGTCAATCTGACAGTATCCCCACACAAACGTAGATCATAAAATAGATCATAATCAAATCAATCGGCACGCGTATTTCATATAATTATAGTGTTTGCCGTTCCTTGATGCATAGATAACAGCCATATTACGACCTTCACGCCTTTCTGTAACGTTATAGATCCCAAGGCGTGATTTTGTGCACCTGGTGTTCCTAATAAGATGGTATCTATGAAAGGAAAGAGCCGACTTTTTTGCTCATCCATTTTTTTGCGAGATCTATAGATACCTTAAAAGTGACTAACAATAACTGACACTTTCCACTCATCAACCGACTGTTGTGCCAGCTGTCTTTTATCTCGTGAGGAGGCAATACAGTACTCCATACTTGATACATTTTAAAGGGGTCCAGATGATGGCGCGCGCGCGGTTAATTGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>301 239 208 95 62 55 40</canonical_bands>
                <polymorphic_bands>334 301 208 62 55 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGCATAAAAACAATCGAAAG</pcr_primer_p1>
		<pcr_primer_p2>TGATCTATTTTATGATCTACGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>215</pcr_amplicon_size>
		<canonical_amplicon>GAAGCATAAAAACAATCGAAAGCCTCGTACCCCGTTTTCCACGCAGCAACTTATTTCCCTGGAGCGAAAATTTCAATCCAAACAGTATTTGTCGATTGCCGAGCGTGCCGAGTTCAGCGCGTCGTTGCAATTAACGGAGACGCAAGTCAAGATATGGTTCCAGGTTAGTCAATCTGACAGTATCCCCACACAAACGTAGATCATAAAATAGATCA</canonical_amplicon>
		<polymorphic_amplicon>GAAGCATAAAAACAATCGAAAGCCTCGTACCCCGTTTTCCACGCAGCAACTTATTTCCCTGGAGCGAAAATTTCAATCCAARCAGTATTTGTCGATTGCCGAGCGTGCCGAGTTCAGCGCGTCGTTGCAATTAACGGAGACGCAAGTCAAGATATGGTTCCAGGTTAGTCAATCTGACAGTATCCCCACACAAACGTAGATCATAAAATAGATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37842</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>299480</contig_pos>
        <strand>+</strand>
        <context>CAGGTTAGTC[A/T]ATCTGACAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCGTTGCAATTAACGGAGACGCAAGTCAAGATATGGTTCCAGGTTAGTC</left_flank>
        <right_flank>ATCTGACAGTATCCCCACACAAACGTAGATCATAAAATAGATCATAATCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTGTCCTCTAATGTGTCTTTTCAAGGCTTACCTAGGTTAAATACATGTTCCCAATTAGAAGATTAGTATAGTAACATCCGTCTTTCCCATCTAATCCTAAGCCCCCTTTCAGTAACCGTCTGCCTGTCATGAGTTCTGACAGCTCACCGGAATCCTCTGCCTCATCGCCACTGTCCATGCAACATCACACCCTTCCATGGCTATCATCCCAACGAGAGGATTCACCGAGTACGCCCCAACAATTCTTAATTGGAAATTCTAGAAACTCTAATTTACAGCCAGCGACGATGCGAAAATCCAAATCGGTCTCACCAAGTGCATGTTGCGGAAGCATAAAAACAATCGAAAGCCTCGTACCCCGTTTTCCACGCAGCAACTTATTTCCCTGGAGCGAAAATTTCAATCCAAACAGTATTTGTCGATTGCCGAGCGTGCCGAGTTCAGCGCGTCGTTGCAATTAACGGAGACGCAAGTCAAGATATGGTTCCAGGTTAGTCAATCTGACAGTATCCCCACACAAACGTAGATCATAAAATAGATCATAATCAAATCAATCGGCACGCGTATTTCATATAATTATAGTGTTTGCCGTTCCTTGATGCATAGATAACAGCCATATTACGACCTTCACGCCTTTCTGTAACGTTATAGATCCCAAGGCGTGATTTTGTGCACCTGGTGTTCCTAATAAGATGGTATCTATGAAAGGAAAGAGCCGACTTTTTTGCTCATCCATTTTTTTGCGAGATCTATAGATACCTTAAAAGTGACTAACAATAACTGACACTTTCCACTCATCAACCGACTGTTGTGCCAGCTGTCTTTTATCTCGTGAGGAGGCAATACAGTACTCCATACTTGATACATTTTAAAGGGGTCCAGATGATGGCGCGCGCGCGGTTAATTGACCTTCCCCATCATCACGTAATTGGTAAATATTGCCCAAGGATGATAGCCCGATGGTTTTCGATGAAATCCAATCTTTCAAAAATTCTTCG</canonical>
            <polymorphic>CCTTGTCCTCTAATGTGTCTTTTCAAGGCTTACCTAGGTTAAATACATGTTCCCAATTAGAAGATTAGTATAGTAACATCCGTCTTTCCCATCTAATCCTAAGCCCCCTTTCAGTAACCGTCTGCCTGTCATGAGTTCTGACAGCTCACCGGAATCCTCTGCCTCATCGCCACTGTCCATGCAACATCACACCCTTCCATGGCTATCATCCCAACGAGAGGATTCACCGAGTACGCCCCAACAATTCTTAATTGGAAATTCTAGAAACTCTAATTTACAGCCAGCGACGATGCGAAAATCCAAATCGGTCTCACCAAGTGCATGTTGCGGAAGCATAAAAACAATCGAAAGCCTCGTACCCCGTTTTCCACGCAGCAACTTATTTCCCTGGAGCGAAAATTTCAATCCAAACAGTATTTGTCGATTGCCGAGCGTGCCGAGTTCAGCGCGTCGTTGCAATTAACGGAGACGCAAGTCAAGATATGGTTCCAGGTTAGTCWATCTGACAGTATCCCCACACAAACGTAGATCATAAAATAGATCATAATCAAATCAATCGGCACGCGTATTTCATATAATTATAGTGTTTGCCGTTCCTTGATGCATAGATAACAGCCATATTACGACCTTCACGCCTTTCTGTAACGTTATAGATCCCAAGGCGTGATTTTGTGCACCTGGTGTTCCTAATAAGATGGTATCTATGAAAGGAAAGAGCCGACTTTTTTGCTCATCCATTTTTTTGCGAGATCTATAGATACCTTAAAAGTGACTAACAATAACTGACACTTTCCACTCATCAACCGACTGTTGTGCCAGCTGTCTTTTATCTCGTGAGGAGGCAATACAGTACTCCATACTTGATACATTTTAAAGGGGTCCAGATGATGGCGCGCGCGCGGTTAATTGACCTTCCCCATCATCACGTAATTGGTAAATATTGCCCAAGGATGATAGCCCGATGGTTTTCGATGAAATCCAATCTTTCAAAAATTCTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGCATAAAAACAATCGAAAG</pcr_primer_p1>
		<pcr_primer_p2>AGGAACGGCAAACACTATAA</pcr_primer_p2>
		<pcr_amplicon_size>269</pcr_amplicon_size>
		<canonical_amplicon>GAAGCATAAAAACAATCGAAAGCCTCGTACCCCGTTTTCCACGCAGCAACTTATTTCCCTGGAGCGAAAATTTCAATCCAAACAGTATTTGTCGATTGCCGAGCGTGCCGAGTTCAGCGCGTCGTTGCAATTAACGGAGACGCAAGTCAAGATATGGTTCCAGGTTAGTCAATCTGACAGTATCCCCACACAAACGTAGATCATAAAATAGATCATAATCAAATCAATCGGCACGCGTATTTCATATAATTATAGTGTTTGCCGTTCCT</canonical_amplicon>
		<polymorphic_amplicon>GAAGCATAAAAACAATCGAAAGCCTCGTACCCCGTTTTCCACGCAGCAACTTATTTCCCTGGAGCGAAAATTTCAATCCAAACAGTATTTGTCGATTGCCGAGCGTGCCGAGTTCAGCGCGTCGTTGCAATTAACGGAGACGCAAGTCAAGATATGGTTCCAGGTTAGTCWATCTGACAGTATCCCCACACAAACGTAGATCATAAAATAGATCATAATCAAATCAATCGGCACGCGTATTTCATATAATTATAGTGTTTGCCGTTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37843</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>299758</contig_pos>
        <strand></strand>
        <context>AGTGACTAAC[A/C]ATAACTGACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCTCATCCATTTTTTTGCGAGATCTATAGATACCTTAAAAGTGACTAAC</left_flank>
        <right_flank>ATAACTGACACTTTCCACTCATCAACCGACTGTTGTGCCAGCTGTCTTTT</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCAGCGACGATGCGAAAATCCAAATCGGTCTCACCAAGTGCATGTTGCGGAAGCATAAAAACAATCGAAAGCCTCGTACCCCGTTTTCCACGCAGCAACTTATTTCCCTGGAGCGAAAATTTCAATCCAAACAGTATTTGTCGATTGCCGAGCGTGCCGAGTTCAGCGCGTCGTTGCAATTAACGGAGACGCAAGTCAAGATATGGTTCCAGGTTAGTCAATCTGACAGTATCCCCACACAAACGTAGATCATAAAATAGATCATAATCAAATCAATCGGCACGCGTATTTCATATAATTATAGTGTTTGCCGTTCCTTGATGCATAGATAACAGCCATATTACGACCTTCACGCCTTTCTGTAACGTTATAGATCCCAAGGCGTGATTTTGTGCACCTGGTGTTCCTAATAAGATGGTATCTATGAAAGGAAAGAGCCGACTTTTTTGCTCATCCATTTTTTTGCGAGATCTATAGATACCTTAAAAGTGACTAACAATAACTGACACTTTCCACTCATCAACCGACTGTTGTGCCAGCTGTCTTTTATCTCGTGAGGAGGCAATACAGTACTCCATACTTGATACATTTTAAAGGGGTCCAGATGATGGCGCGCGCGCGGTTAATTGACCTTCCCCATCATCACGTAATTGGTAAATATTGCCCAAGGATGATAGCCCGATGGTTTTCGATGAAATCCAATCTTTCAAAAATTCTTCGGACCGCGGAACACACACAATGGTGTTAATGACGCAAGCTAATTGTCACATATTCAGCTGCTCATACAGGCTTTTCTTTTCTTCCCCCAATCAGTCACCCCGTTTGTGTGATGGGCCATAAAATTAGGACGGAATTGCGTTAGGGGCAGCATCACCATCTGCACAACCTTGATTTACTATTTTGAGAGAGATTCATACCTGTCATTTATTTCGCGCTTAGCTACAATATCTTATACATACATTCACATACCAAAAACATCTGAAGGTCGGCGTTGGTGT</canonical>
            <polymorphic>AGCCAGCGACGATGCGAAAATCCAAATCGGTCTCACCAAGTGCATGTTGCGGAAGCATAAAAACAATCGAAAGCCTCGTACCCCGTTTTCCACGCAGCAACTTATTTCCCTGGAGCGAAAATTTCAATCCAAACAGTATTTGTCGATTGCCGAGCGTGCCGAGTTCAGCGCGTCGTTGCAATTAACGGAGACGCAAGTCAAGATATGGTTCCAGGTTAGTCAATCTGACAGTATCCCCACACAAACGTAGATCATAAAATAGATCATAATCAAATCAATCGGCACGCGTATTTCATATAATTATAGTGTTTGCCGTTCCTTGATGCATAGATAACAGCCATATTACGACCTTCACGCCTTTCTGTAACGTTATAGATCCCAAGGCGTGATTTTGTGCACCTGGTGTTCCTAATAAGATGGTATCTATGAAAGGAAAGAGCCGACTTTTTTGCTCATCCATTTTTTTGCGAGATCTATAGATACCTTAAAAGTGACTAACMATAACTGACACTTTCCACTCATCAACCGACTGTTGTGCCAGCTGTCTTTTATCTCGTGAGGAGGCAATACAGTACTCCATACTTGATACATTTTAAAGGGGTCCAGATGATGGCGCGCGCGCGGTTAATTGACCTTCCCCATCATCACGTAATTGGTAAATATTGCCCAAGGATGATAGCCCGATGGTTTTCGATGAAATCCAATCTTTCAAAAATTCTTCGGACCGCGGAACACACACAATGGTGTTAATGACGCAAGCTAATTGTCACATATTCAGCTGCTCATACAGGCTTTTCTTTTCTTCCCCCAATCAGTCACCCCGTTTGTGTGATGGGCCATAAAATTAGGACGGAATTGCGTTAGGGGCAGCATCACCATCTGCACAACCTTGATTTACTATTTTGAGAGAGATTCATACCTGTCATTTATTTCGCGCTTAGCTACAATATCTTATACATACATTCACATACCAAAAACATCTGAAGGTCGGCGTTGGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCCTTGATGCATAGATAACAG</pcr_primer_p1>
		<pcr_primer_p2>CTCCTCACGAGATAAAAGACAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTCCTTGATGCATAGATAACAGCCATATTACGACCTTCACGCCTTTCTGTAACGTTATAGATCCCAAGGCGTGATTTTGTGCACCTGGTGTTCCTAATAAGATGGTATCTATGAAAGGAAAGAGCCGACTTTTTTGCTCATCCATTTTTTTGCGAGATCTATAGATACCTTAAAAGTGACTAACAATAACTGACACTTTCCACTCATCAACCGACTGTTGTGCCAGCTGTCTTTTATCTCGTGAGGAG</canonical_amplicon>
		<polymorphic_amplicon>GTTCCTTGATGCATAGATAACAGCCATATTACGACCTTCACGCCTTTCTGTAACGTTATAGATCCCAAGGCGTGATTTTGTGCACCTGGTGTTCCTAATAAGATGGTATCTATGAAAGGAAAGAGCCGACTTTTTTGCTCATCCATTTTTTTGCGAGATCTATAGATACCTTAAAAGTGACTAACMATAACTGACACTTTCCACTCATCAACCGACTGTTGTGCCAGCTGTCTTTTATCTCGTGAGGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37844</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>300027</contig_pos>
        <strand>+</strand>
        <context>GCTAATTGTC[A/G]CATATTCAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGGACCGCGGAACACACACAATGGTGTTAATGACGCAAGCTAATTGTC</left_flank>
        <right_flank>CATATTCAGCTGCTCATACAGGCTTTTCTTTTCTTCCCCCAATCAGTCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAATCAATCGGCACGCGTATTTCATATAATTATAGTGTTTGCCGTTCCTTGATGCATAGATAACAGCCATATTACGACCTTCACGCCTTTCTGTAACGTTATAGATCCCAAGGCGTGATTTTGTGCACCTGGTGTTCCTAATAAGATGGTATCTATGAAAGGAAAGAGCCGACTTTTTTGCTCATCCATTTTTTTGCGAGATCTATAGATACCTTAAAAGTGACTAACAATAACTGACACTTTCCACTCATCAACCGACTGTTGTGCCAGCTGTCTTTTATCTCGTGAGGAGGCAATACAGTACTCCATACTTGATACATTTTAAAGGGGTCCAGATGATGGCGCGCGCGCGGTTAATTGACCTTCCCCATCATCACGTAATTGGTAAATATTGCCCAAGGATGATAGCCCGATGGTTTTCGATGAAATCCAATCTTTCAAAAATTCTTCGGACCGCGGAACACACACAATGGTGTTAATGACGCAAGCTAATTGTCACATATTCAGCTGCTCATACAGGCTTTTCTTTTCTTCCCCCAATCAGTCACCCCGTTTGTGTGATGGGCCATAAAATTAGGACGGAATTGCGTTAGGGGCAGCATCACCATCTGCACAACCTTGATTTACTATTTTGAGAGAGATTCATACCTGTCATTTATTTCGCGCTTAGCTACAATATCTTATACATACATTCACATACCAAAAACATCTGAAGGTCGGCGTTGGTGTCAAAACTGTCAAACACTCTGCTTTCCCTCATTCATTGAGGTCTTAATGATATGATAAATGATCTAGAAGATTGCGGAATTTGGCAATGAAAATATTTCCGATATCACAGCTGGAGTCCATCTGGTTGACGAAAGATGATATTGAAAAATGGAAATGGAACAAAAAAATGAAACAAACTTACAGAATCGAAGGGCAAAATCAAAACGACTACAGGAAGCGGAAGTTGAAAAAGTGAAATTTGCTCAAGTCAGTGCTTACGCAGCAGCCGT</canonical>
            <polymorphic>TCAAATCAATCGGCACGCGTATTTCATATAATTATAGTGTTTGCCGTTCCTTGATGCATAGATAACAGCCATATTACGACCTTCACGCCTTTCTGTAACGTTATAGATCCCAAGGCGTGATTTTGTGCACCTGGTGTTCCTAATAAGATGGTATCTATGAAAGGAAAGAGCCGACTTTTTTGCTCATCCATTTTTTTGCGAGATCTATAGATACCTTAAAAGTGACTAACAATAACTGACACTTTCCACTCATCAACCGACTGTTGTGCCAGCTGTCTTTTATCTCGTGAGGAGGCAATACAGTACTCCATACTTGATACATTTTAAAGGGGTCCAGATGATGGCGCGCGCGCGGTTAATTGACCTTCCCCATCATCACGTAATTGGTAAATATTGCCCAAGGATGATAGCCCGATGGTTTTCGATGAAATCCAATCTTTCAAAAATTCTTCGGACCGCGGAACACACACAATGGTGTTAATGACGCAAGCTAATTGTCRCATATTCAGCTGCTCATACAGGCTTTTCTTTTCTTCCCCCAATCAGTCACCCCGTTTGTGTGATGGGCCATAAAATTAGGACGGAATTGCGTTAGGGGCAGCATCACCATCTGCACAACCTTGATTTACTATTTTGAGAGAGATTCATACCTGTCATTTATTTCGCGCTTAGCTACAATATCTTATACATACATTCACATACCAAAAACATCTGAAGGTCGGCGTTGGTGTCAAAACTGTCAAACACTCTGCTTTCCCTCATTCATTGAGGTCTTAATGATATGATAAATGATCTAGAAGATTGCGGAATTTGGCAATGAAAATATTTCCGATATCACAGCTGGAGTCCATCTGGTTGACGAAAGATGATATTGAAAAATGGAAATGGAACAAAAAAATGAAACAAACTTACAGAATCGAAGGGCAAAATCAAAACGACTACAGGAAGCGGAAGTTGAAAAAGTGAAATTTGCTCAAGTCAGTGCTTACGCAGCAGCCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>128 91 89 88 87 82 49 46 44 34 33 24 23 21 20 19 17 16 16 15 11 9 8 8 7 7 2 2 2 2</canonical_bands>
                <polymorphic_bands>128 91 89 88 87 82 72 46 44 34 33 24 21 20 19 17 16 16 15 11 9 8 8 7 7 2 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>455 275 127 94 49</canonical_bands>
                <polymorphic_bands>455 324 127 94</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>455 275 221 49</canonical_bands>
                <polymorphic_bands>455 324 221</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAATATTGCCCAAGGATGATA</pcr_primer_p1>
		<pcr_primer_p2>TCAAAATAGTAAATCAAGGTTGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAATATTGCCCAAGGATGATAGCCCGATGGTTTTCGATGAAATCCAATCTTTCAAAAATTCTTCGGACCGCGGAACACACACAATGGTGTTAATGACGCAAGCTAATTGTCACATATTCAGCTGCTCATACAGGCTTTTCTTTTCTTCCCCCAATCAGTCACCCCGTTTGTGTGATGGGCCATAAAATTAGGACGGAATTGCGTTAGGGGCAGCATCACCATCTGCACAACCTTGATTTACTATTTTGA</canonical_amplicon>
		<polymorphic_amplicon>TAAATATTGCCCAAGGATGATAGCCCGATGGTTTTCGATGAAATCCAATCTTTCAAAAATTCTTCGGACCGCGGAACACACACAATGGTGTTAATGACGCAAGCTAATTGTCRCATATTCAGCTGCTCATACAGGCTTTTCTTTTCTTCCCCCAATCAGTCACCCCGTTTGTGTGATGGGCCATAAAATTAGGACGGAATTGCGTTAGGGGCAGCATCACCATCTGCACAACCTTGATTTACTATTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37845</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>300131</contig_pos>
        <strand>+</strand>
        <context>AGGGGCAGCA[A/T]CACCATCTGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTTGTGTGATGGGCCATAAAATTAGGACGGAATTGCGTTAGGGGCAGCA</left_flank>
        <right_flank>CACCATCTGCACAACCTTGATTTACTATTTTGAGAGAGATTCATACCTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATCCCAAGGCGTGATTTTGTGCACCTGGTGTTCCTAATAAGATGGTATCTATGAAAGGAAAGAGCCGACTTTTTTGCTCATCCATTTTTTTGCGAGATCTATAGATACCTTAAAAGTGACTAACAATAACTGACACTTTCCACTCATCAACCGACTGTTGTGCCAGCTGTCTTTTATCTCGTGAGGAGGCAATACAGTACTCCATACTTGATACATTTTAAAGGGGTCCAGATGATGGCGCGCGCGCGGTTAATTGACCTTCCCCATCATCACGTAATTGGTAAATATTGCCCAAGGATGATAGCCCGATGGTTTTCGATGAAATCCAATCTTTCAAAAATTCTTCGGACCGCGGAACACACACAATGGTGTTAATGACGCAAGCTAATTGTCACATATTCAGCTGCTCATACAGGCTTTTCTTTTCTTCCCCCAATCAGTCACCCCGTTTGTGTGATGGGCCATAAAATTAGGACGGAATTGCGTTAGGGGCAGCATCACCATCTGCACAACCTTGATTTACTATTTTGAGAGAGATTCATACCTGTCATTTATTTCGCGCTTAGCTACAATATCTTATACATACATTCACATACCAAAAACATCTGAAGGTCGGCGTTGGTGTCAAAACTGTCAAACACTCTGCTTTCCCTCATTCATTGAGGTCTTAATGATATGATAAATGATCTAGAAGATTGCGGAATTTGGCAATGAAAATATTTCCGATATCACAGCTGGAGTCCATCTGGTTGACGAAAGATGATATTGAAAAATGGAAATGGAACAAAAAAATGAAACAAACTTACAGAATCGAAGGGCAAAATCAAAACGACTACAGGAAGCGGAAGTTGAAAAAGTGAAATTTGCTCAAGTCAGTGCTTACGCAGCAGCCGTGAATGATCCAAGTCTCATGGCCTTCTATCCAGGACAATGGTGAAATAATAATTCTTCCTAATAAATTCCTTTTTTCCCCCTGAAACTAGTCCATCCTAATAAGT</canonical>
            <polymorphic>AGATCCCAAGGCGTGATTTTGTGCACCTGGTGTTCCTAATAAGATGGTATCTATGAAAGGAAAGAGCCGACTTTTTTGCTCATCCATTTTTTTGCGAGATCTATAGATACCTTAAAAGTGACTAACAATAACTGACACTTTCCACTCATCAACCGACTGTTGTGCCAGCTGTCTTTTATCTCGTGAGGAGGCAATACAGTACTCCATACTTGATACATTTTAAAGGGGTCCAGATGATGGCGCGCGCGCGGTTAATTGACCTTCCCCATCATCACGTAATTGGTAAATATTGCCCAAGGATGATAGCCCGATGGTTTTCGATGAAATCCAATCTTTCAAAAATTCTTCGGACCGCGGAACACACACAATGGTGTTAATGACGCAAGCTAATTGTCACATATTCAGCTGCTCATACAGGCTTTTCTTTTCTTCCCCCAATCAGTCACCCCGTTTGTGTGATGGGCCATAAAATTAGGACGGAATTGCGTTAGGGGCAGCAWCACCATCTGCACAACCTTGATTTACTATTTTGAGAGAGATTCATACCTGTCATTTATTTCGCGCTTAGCTACAATATCTTATACATACATTCACATACCAAAAACATCTGAAGGTCGGCGTTGGTGTCAAAACTGTCAAACACTCTGCTTTCCCTCATTCATTGAGGTCTTAATGATATGATAAATGATCTAGAAGATTGCGGAATTTGGCAATGAAAATATTTCCGATATCACAGCTGGAGTCCATCTGGTTGACGAAAGATGATATTGAAAAATGGAAATGGAACAAAAAAATGAAACAAACTTACAGAATCGAAGGGCAAAATCAAAACGACTACAGGAAGCGGAAGTTGAAAAAGTGAAATTTGCTCAAGTCAGTGCTTACGCAGCAGCCGTGAATGATCCAAGTCTCATGGCCTTCTATCCAGGACAATGGTGAAATAATAATTCTTCCTAATAAATTCCTTTTTTCCCCCTGAAACTAGTCCATCCTAATAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTTCGATGAAATCCAATCT</pcr_primer_p1>
		<pcr_primer_p2>CGAAATAAATGACAGGTATGAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTTTCGATGAAATCCAATCTTTCAAAAATTCTTCGGACCGCGGAACACACACAATGGTGTTAATGACGCAAGCTAATTGTCACATATTCAGCTGCTCATACAGGCTTTTCTTTTCTTCCCCCAATCAGTCACCCCGTTTGTGTGATGGGCCATAAAATTAGGACGGAATTGCGTTAGGGGCAGCATCACCATCTGCACAACCTTGATTTACTATTTTGAGAGAGATTCATACCTGTCATTTATTTCG</canonical_amplicon>
		<polymorphic_amplicon>GTTTTCGATGAAATCCAATCTTTCAAAAATTCTTCGGACCGCGGAACACACACAATGGTGTTAATGACGCAAGCTAATTGTCACATATTCAGCTGCTCATACAGGCTTTTCTTTTCTTCCCCCAATCAGTCACCCCGTTTGTGTGATGGGCCATAAAATTAGGACGGAATTGCGTTAGGGGCAGCAWCACCATCTGCACAACCTTGATTTACTATTTTGAGAGAGATTCATACCTGTCATTTATTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37846</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>303723</contig_pos>
        <strand>+</strand>
        <context>ATGTATCACT[C/T]TTTTTWAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTAACTGATATTACAGTATTCAAACTTTCAAAAATCTAAATGTATCACT</left_flank>
        <right_flank>TTTTTTAAACTGGCAAATAACTGATTTCTTTTTTTTCGACCAATGTCGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTAATTTTTTGAAATGATTTTTTGATTTTTTTTGATTGGTAAACTGCTAACTGTGAATAAAAATTTGCAATTGTTCAATTGAATTCTTTTTGTGGAATTTTTAAAAAAAAATTTCGGAGGATGTAAAACAGGCCCTGATTGATAACTGCATTCGTAGAAATTTCAAAAATTTCCTAGTTTTCCAGCCAGTTGCCGATATCTGAAAAACGCCTTTTTTCACGTTTTTAGTACAAAACTGACCAAAAGGGGAGCCTTTCAGAAACCAAAAAGCTGAAAACCAAGGACTTTAGCTAAAAATTAAGGGCAAAAAATTTTGTGAATGCAACGTTTTCAATCTATGTCTGTTATAGACCTCCAACATTATCAATGTTACCGGAAACTTGAGAGCCAAGCTCCAGGCTCCTGAAAATGCCAAAATCAAAAGAAAAGTGCGATGTTGCATATTTCATTAACTGATATTACAGTATTCAAACTTTCAAAAATCTAAATGTATCACTTTTTTTTAAACTGGCAAATAACTGATTTCTTTTTTTTCGACCAATGTCGCCTTGTCTCTCGTCTCACGTTATAAACATAGCGGGCGGCGTAACCCGGAAAATGTCGGCCGCTCGCTAGGGGGACCCTATATCATCGTCGTCGTTTTCCCCCGTTTATGGGCCGGCTGGCTGTCGCGGATAGCCAGGGTAGGCGGCGTATAGATCGGCCTGTGAGCCGAGACGCCAAGTTTGAGAAACCTCAAAAATGGAAAAGCCGCAAGGCAAATTACTTTTTGTGAATCTGAACTTTTTGAATAAAATAATTTGGCTTAAAATTTATTTTTTTTTCATGAAGCCAAAAACACAGATTTCAATGGTGAAATTGAATTTTTCTGAATACAAATTTTAACTCACACCTACAGTAAGTTTCTCAATGGAAGCGTGATTTCGCAAGCGTTTTTACGTGTTTTTTTTCCCTCCTGCTCACACTCTGATTGTCATTCCTTTTTCCGTTTTCCAACC</canonical>
            <polymorphic>TTTTAATTTTTTGAAATGATTTTTTGATTTTTTTTGATTGGTAAACTGCTAACTGTGAATAAAAATTTGCAATTGTTCAATTGAATTCTTTTTGTGGAATTTTTAAAAAAAAATTTCGGAGGATGTAAAACAGGCCCTGATTGATAACTGCATTCGTAGAAATTTCAAAAATTTCCTAGTTTTCCAGCCAGTTGCCGATATCTGAAAAACGCCTTTTTTCACGTTTTTAGTACAAAACTGACCAAAAGGGGAGCCTTTCAGAAACCAAAAAGCTGAAAACCAAGGACTTTAGCTAAAAATTAAGGGCAAAAAATTTTGTGAATGCAACGTTTTCAATCTATGTCTGTTATAGACCTCCAACATTATCAATGTTACCGGAAACTTGAGAGCCAAGCTCCAGGCTCCTGAAAATGCCAAAATCAAAAGAAAAGTGCGATGTTGCATATTTCATTAACTGATATTACAGTATTCAAACTTTCAAAAATCTAAATGTATCACTYTTTTTTAAACTGGCAAATAACTGATTTCTTTTTTTTCGACCAATGTCGCCTTGTCTCTCGTCTCACGTTATAAACATAGCGGGCGGCGTAACCCGGAAAATGTCGGCCGCTCGCTAGGGGGACCCTATATCATCGTCGTCGTTTTCCCCCGTTTATGGGCCGGCTGGCTGTCGCGGATAGCCAGGGTAGGCGGCGTATAGATCGGCCTGTGAGCCGAGACGCCAAGTTTGAGAAACCTCAAAAATGGAAAAGCCGCAAGGCAAATTACTTTTTGTGAATCTGAACTTTTTGAATAAAATAATTTGGCTTAAAATTTATTTTTTTTTCATGAAGCCAAAAACACAGATTTCAATGGTGAAATTGAATTTTTCTGAATACAAATTTTAACTCACACCTACAGTAAGTTTCTCAATGGAAGCGTGATTTCGCAAGCGTTTTTACGTGTTTTTTTTCCCTCCTGCTCACACTCTGATTGTCATTCCTTTTTCCGTTTTCCAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTCTTTTTGTGGAATTTTTA</pcr_primer_p1>
		<pcr_primer_p2>TAACGTGAGACGAGAGACAAG</pcr_primer_p2>
		<pcr_amplicon_size>488</pcr_amplicon_size>
		<canonical_amplicon>GAATTCTTTTTGTGGAATTTTTAAAAAAAAATTTCGGAGGATGTAAAACAGGCCCTGATTGATAACTGCATTCGTAGAAATTTCAAAAATTTCCTAGTTTTCCAGCCAGTTGCCGATATCTGAAAAACGCCTTTTTTCACGTTTTTAGTACAAAACTGACCAAAAGGGGAGCCTTTCAGAAACCAAAAAGCTGAAAACCAAGGACTTTAGCTAAAAATTAAGGGCAAAAAATTTTGTGAATGCAACGTTTTCAATCTATGTCTGTTATAGACCTCCAACATTATCAATGTTACCGGAAACTTGAGAGCCAAGCTCCAGGCTCCTGAAAATGCCAAAATCAAAAGAAAAGTGCGATGTTGCATATTTCATTAACTGATATTACAGTATTCAAACTTTCAAAAATCTAAATGTATCACTTTTTTTTAAACTGGCAAATAACTGATTTCTTTTTTTTCGACCAATGTCGCCTTGTCTCTCGTCTCACGTTA</canonical_amplicon>
		<polymorphic_amplicon>GAATTCTTTTTGTGGAATTTTTAAAAAAAAATTTCGGAGGATGTAAAACAGGCCCTGATTGATAACTGCATTCGTAGAAATTTCAAAAATTTCCTAGTTTTCCAGCCAGTTGCCGATATCTGAAAAACGCCTTTTTTCACGTTTTTAGTACAAAACTGACCAAAAGGGGAGCCTTTCAGAAACCAAAAAGCTGAAAACCAAGGACTTTAGCTAAAAATTAAGGGCAAAAAATTTTGTGAATGCAACGTTTTCAATCTATGTCTGTTATAGACCTCCAACATTATCAATGTTACCGGAAACTTGAGAGCCAAGCTCCAGGCTCCTGAAAATGCCAAAATCAAAAGAAAAGTGCGATGTTGCATATTTCATTAACTGATATTACAGTATTCAAACTTTCAAAAATCTAAATGTATCACTYTTTTTTAAACTGGCAAATAACTGATTTCTTTTTTTTCGACCAATGTCGCCTTGTCTCTCGTCTCACGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37847</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>303729</contig_pos>
        <strand>+</strand>
        <context>CACTYTTTTT[A/T]AAACTGGCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGATATTACAGTATTCAAACTTTCAAAAATCTAAATGTATCACTTTTTTT</left_flank>
        <right_flank>AAACTGGCAAATAACTGATTTCTTTTTTTTCGACCAATGTCGCCTTGTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTGAAATGATTTTTTGATTTTTTTTGATTGGTAAACTGCTAACTGTGAATAAAAATTTGCAATTGTTCAATTGAATTCTTTTTGTGGAATTTTTAAAAAAAAATTTCGGAGGATGTAAAACAGGCCCTGATTGATAACTGCATTCGTAGAAATTTCAAAAATTTCCTAGTTTTCCAGCCAGTTGCCGATATCTGAAAAACGCCTTTTTTCACGTTTTTAGTACAAAACTGACCAAAAGGGGAGCCTTTCAGAAACCAAAAAGCTGAAAACCAAGGACTTTAGCTAAAAATTAAGGGCAAAAAATTTTGTGAATGCAACGTTTTCAATCTATGTCTGTTATAGACCTCCAACATTATCAATGTTACCGGAAACTTGAGAGCCAAGCTCCAGGCTCCTGAAAATGCCAAAATCAAAAGAAAAGTGCGATGTTGCATATTTCATTAACTGATATTACAGTATTCAAACTTTCAAAAATCTAAATGTATCACTTTTTTTTAAACTGGCAAATAACTGATTTCTTTTTTTTCGACCAATGTCGCCTTGTCTCTCGTCTCACGTTATAAACATAGCGGGCGGCGTAACCCGGAAAATGTCGGCCGCTCGCTAGGGGGACCCTATATCATCGTCGTCGTTTTCCCCCGTTTATGGGCCGGCTGGCTGTCGCGGATAGCCAGGGTAGGCGGCGTATAGATCGGCCTGTGAGCCGAGACGCCAAGTTTGAGAAACCTCAAAAATGGAAAAGCCGCAAGGCAAATTACTTTTTGTGAATCTGAACTTTTTGAATAAAATAATTTGGCTTAAAATTTATTTTTTTTTCATGAAGCCAAAAACACAGATTTCAATGGTGAAATTGAATTTTTCTGAATACAAATTTTAACTCACACCTACAGTAAGTTTCTCAATGGAAGCGTGATTTCGCAAGCGTTTTTACGTGTTTTTTTTCCCTCCTGCTCACACTCTGATTGTCATTCCTTTTTCCGTTTTCCAACCCTTCTT</canonical>
            <polymorphic>TTTTTTGAAATGATTTTTTGATTTTTTTTGATTGGTAAACTGCTAACTGTGAATAAAAATTTGCAATTGTTCAATTGAATTCTTTTTGTGGAATTTTTAAAAAAAAATTTCGGAGGATGTAAAACAGGCCCTGATTGATAACTGCATTCGTAGAAATTTCAAAAATTTCCTAGTTTTCCAGCCAGTTGCCGATATCTGAAAAACGCCTTTTTTCACGTTTTTAGTACAAAACTGACCAAAAGGGGAGCCTTTCAGAAACCAAAAAGCTGAAAACCAAGGACTTTAGCTAAAAATTAAGGGCAAAAAATTTTGTGAATGCAACGTTTTCAATCTATGTCTGTTATAGACCTCCAACATTATCAATGTTACCGGAAACTTGAGAGCCAAGCTCCAGGCTCCTGAAAATGCCAAAATCAAAAGAAAAGTGCGATGTTGCATATTTCATTAACTGATATTACAGTATTCAAACTTTCAAAAATCTAAATGTATCACTTTTTTTWAAACTGGCAAATAACTGATTTCTTTTTTTTCGACCAATGTCGCCTTGTCTCTCGTCTCACGTTATAAACATAGCGGGCGGCGTAACCCGGAAAATGTCGGCCGCTCGCTAGGGGGACCCTATATCATCGTCGTCGTTTTCCCCCGTTTATGGGCCGGCTGGCTGTCGCGGATAGCCAGGGTAGGCGGCGTATAGATCGGCCTGTGAGCCGAGACGCCAAGTTTGAGAAACCTCAAAAATGGAAAAGCCGCAAGGCAAATTACTTTTTGTGAATCTGAACTTTTTGAATAAAATAATTTGGCTTAAAATTTATTTTTTTTTCATGAAGCCAAAAACACAGATTTCAATGGTGAAATTGAATTTTTCTGAATACAAATTTTAACTCACACCTACAGTAAGTTTCTCAATGGAAGCGTGATTTCGCAAGCGTTTTTACGTGTTTTTTTTCCCTCCTGCTCACACTCTGATTGTCATTCCTTTTTCCGTTTTCCAACCCTTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 402 98</canonical_bands>
                <polymorphic_bands>902 98</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>303 197 151 122 97 76 54</canonical_bands>
                <polymorphic_bands>357 197 151 122 97 76</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTCTTTTTGTGGAATTTTTA</pcr_primer_p1>
		<pcr_primer_p2>TAACGTGAGACGAGAGACAAG</pcr_primer_p2>
		<pcr_amplicon_size>488</pcr_amplicon_size>
		<canonical_amplicon>GAATTCTTTTTGTGGAATTTTTAAAAAAAAATTTCGGAGGATGTAAAACAGGCCCTGATTGATAACTGCATTCGTAGAAATTTCAAAAATTTCCTAGTTTTCCAGCCAGTTGCCGATATCTGAAAAACGCCTTTTTTCACGTTTTTAGTACAAAACTGACCAAAAGGGGAGCCTTTCAGAAACCAAAAAGCTGAAAACCAAGGACTTTAGCTAAAAATTAAGGGCAAAAAATTTTGTGAATGCAACGTTTTCAATCTATGTCTGTTATAGACCTCCAACATTATCAATGTTACCGGAAACTTGAGAGCCAAGCTCCAGGCTCCTGAAAATGCCAAAATCAAAAGAAAAGTGCGATGTTGCATATTTCATTAACTGATATTACAGTATTCAAACTTTCAAAAATCTAAATGTATCACTTTTTTTTAAACTGGCAAATAACTGATTTCTTTTTTTTCGACCAATGTCGCCTTGTCTCTCGTCTCACGTTA</canonical_amplicon>
		<polymorphic_amplicon>GAATTCTTTTTGTGGAATTTTTAAAAAAAAATTTCGGAGGATGTAAAACAGGCCCTGATTGATAACTGCATTCGTAGAAATTTCAAAAATTTCCTAGTTTTCCAGCCAGTTGCCGATATCTGAAAAACGCCTTTTTTCACGTTTTTAGTACAAAACTGACCAAAAGGGGAGCCTTTCAGAAACCAAAAAGCTGAAAACCAAGGACTTTAGCTAAAAATTAAGGGCAAAAAATTTTGTGAATGCAACGTTTTCAATCTATGTCTGTTATAGACCTCCAACATTATCAATGTTACCGGAAACTTGAGAGCCAAGCTCCAGGCTCCTGAAAATGCCAAAATCAAAAGAAAAGTGCGATGTTGCATATTTCATTAACTGATATTACAGTATTCAAACTTTCAAAAATCTAAATGTATCACTTTTTTTWAAACTGGCAAATAACTGATTTCTTTTTTTTCGACCAATGTCGCCTTGTCTCTCGTCTCACGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37848</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>303752</contig_pos>
        <strand>+</strand>
        <context>AACTGATTTC[C/T]TTTTTTTCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAAAATCTAAATGTATCACTTTTTTTTAAACTGGCAAATAACTGATTTC</left_flank>
        <right_flank>TTTTTTTCGACCAATGTCGCCTTGTCTCTCGTCTCACGTTATAAACATAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTGATTGGTAAACTGCTAACTGTGAATAAAAATTTGCAATTGTTCAATTGAATTCTTTTTGTGGAATTTTTAAAAAAAAATTTCGGAGGATGTAAAACAGGCCCTGATTGATAACTGCATTCGTAGAAATTTCAAAAATTTCCTAGTTTTCCAGCCAGTTGCCGATATCTGAAAAACGCCTTTTTTCACGTTTTTAGTACAAAACTGACCAAAAGGGGAGCCTTTCAGAAACCAAAAAGCTGAAAACCAAGGACTTTAGCTAAAAATTAAGGGCAAAAAATTTTGTGAATGCAACGTTTTCAATCTATGTCTGTTATAGACCTCCAACATTATCAATGTTACCGGAAACTTGAGAGCCAAGCTCCAGGCTCCTGAAAATGCCAAAATCAAAAGAAAAGTGCGATGTTGCATATTTCATTAACTGATATTACAGTATTCAAACTTTCAAAAATCTAAATGTATCACTTTTTTTTAAACTGGCAAATAACTGATTTCTTTTTTTTCGACCAATGTCGCCTTGTCTCTCGTCTCACGTTATAAACATAGCGGGCGGCGTAACCCGGAAAATGTCGGCCGCTCGCTAGGGGGACCCTATATCATCGTCGTCGTTTTCCCCCGTTTATGGGCCGGCTGGCTGTCGCGGATAGCCAGGGTAGGCGGCGTATAGATCGGCCTGTGAGCCGAGACGCCAAGTTTGAGAAACCTCAAAAATGGAAAAGCCGCAAGGCAAATTACTTTTTGTGAATCTGAACTTTTTGAATAAAATAATTTGGCTTAAAATTTATTTTTTTTTCATGAAGCCAAAAACACAGATTTCAATGGTGAAATTGAATTTTTCTGAATACAAATTTTAACTCACACCTACAGTAAGTTTCTCAATGGAAGCGTGATTTCGCAAGCGTTTTTACGTGTTTTTTTTCCCTCCTGCTCACACTCTGATTGTCATTCCTTTTTCCGTTTTCCAACCCTTCTTATCATACAGTCCAAAAGCTCAAA</canonical>
            <polymorphic>TTTTTTGATTGGTAAACTGCTAACTGTGAATAAAAATTTGCAATTGTTCAATTGAATTCTTTTTGTGGAATTTTTAAAAAAAAATTTCGGAGGATGTAAAACAGGCCCTGATTGATAACTGCATTCGTAGAAATTTCAAAAATTTCCTAGTTTTCCAGCCAGTTGCCGATATCTGAAAAACGCCTTTTTTCACGTTTTTAGTACAAAACTGACCAAAAGGGGAGCCTTTCAGAAACCAAAAAGCTGAAAACCAAGGACTTTAGCTAAAAATTAAGGGCAAAAAATTTTGTGAATGCAACGTTTTCAATCTATGTCTGTTATAGACCTCCAACATTATCAATGTTACCGGAAACTTGAGAGCCAAGCTCCAGGCTCCTGAAAATGCCAAAATCAAAAGAAAAGTGCGATGTTGCATATTTCATTAACTGATATTACAGTATTCAAACTTTCAAAAATCTAAATGTATCACTTTTTTTTAAACTGGCAAATAACTGATTTCYTTTTTTTCGACCAATGTCGCCTTGTCTCTCGTCTCACGTTATAAACATAGCGGGCGGCGTAACCCGGAAAATGTCGGCCGCTCGCTAGGGGGACCCTATATCATCGTCGTCGTTTTCCCCCGTTTATGGGCCGGCTGGCTGTCGCGGATAGCCAGGGTAGGCGGCGTATAGATCGGCCTGTGAGCCGAGACGCCAAGTTTGAGAAACCTCAAAAATGGAAAAGCCGCAAGGCAAATTACTTTTTGTGAATCTGAACTTTTTGAATAAAATAATTTGGCTTAAAATTTATTTTTTTTTCATGAAGCCAAAAACACAGATTTCAATGGTGAAATTGAATTTTTCTGAATACAAATTTTAACTCACACCTACAGTAAGTTTCTCAATGGAAGCGTGATTTCGCAAGCGTTTTTACGTGTTTTTTTTCCCTCCTGCTCACACTCTGATTGTCATTCCTTTTTCCGTTTTCCAACCCTTCTTATCATACAGTCCAAAAGCTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAAACTTTCAAAAATCTAAATG</pcr_primer_p1>
		<pcr_primer_p2>AAAACGACGACGATGATATAG</pcr_primer_p2>
		<pcr_amplicon_size>177</pcr_amplicon_size>
		<canonical_amplicon>TTCAAACTTTCAAAAATCTAAATGTATCACTTTTTTTTAAACTGGCAAATAACTGATTTCTTTTTTTTCGACCAATGTCGCCTTGTCTCTCGTCTCACGTTATAAACATAGCGGGCGGCGTAACCCGGAAAATGTCGGCCGCTCGCTAGGGGGACCCTATATCATCGTCGTCGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTCAAACTTTCAAAAATCTAAATGTATCACTTTTTTTTAAACTGGCAAATAACTGATTTCYTTTTTTTCGACCAATGTCGCCTTGTCTCTCGTCTCACGTTATAAACATAGCGGGCGGCGTAACCCGGAAAATGTCGGCCGCTCGCTAGGGGGACCCTATATCATCGTCGTCGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37849</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>318641</contig_pos>
        <strand></strand>
        <context>gatggatgcc[T/A]atttctgaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CAAAAATTTTGCGAATTTTTGAAAAATTTCTAGTTTTTCAGATGGATGCC</left_flank>
        <right_flank>ATTTCTGAAAAACACCCGTTTTTTCACGTTTTCAGGACAATGGACTGAGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCAATTTTAATCGTAGTTTGGTCGAATAACCGAAAATTTTATGATCGAATTCATTTCATACAGATTTCACTCCTAAATGTAGAATTTTCAAACTATATTTCATATTGGATTTTGCATGAAAATTTTCAAGAATAATTTTATAAACTTACAAATCAATGTATTTTAAAAGTTAGCCTAGAAATCCTAATATTTCTAGCGAAATTTTTTTCAGTTAGATTGGCATGACACTATTGCAAAACTCTATTTTTCATTTTTGTTTTTTTTAAAGCTTCAGTTTCTACCGCTATGTTTCACTCACAGTACCGGTCATTAAGAAATACAAAAACGTATATTTCAGTTGATTTTGACCATTTTCAAAAGTCTAGAGCTCGGCTTTTAAGTTTGCGATCCCTTTGGAAGTTATGGAACGTATGAAACAGATCTAGATTGAACATTTTGTTTTAACTTTCAAAAATTTTGCGAATTTTTGAAAAATTTCTAGTTTTTCAGATGGATGCCTATTTCTGAAAAACACCCGTTTTTTCACGTTTTCAGGACAATGGACTGAGAAGGGGTGTCCTTCAGAAATTGGCAAAAAGCTGAAAAACTAGGAATGTTCGAAAATTATGTAAACGCAAATTGTTCAATCTAGGTCTGTTTTACATCCTCCAAAATTTTCAAAGTGATCGGAAAATTGACAACCAAGTTCCAGATCCCTAAAATACCTAAAATCAAGTGAAAAATAAGTTTTTGTGTATCTCATCAACATGTACTGTACATTTTTATTCTTATTATTAGTTAGATAATAATTTGATTAGATCAGCCTTGGGGTCCGATCGGCGTAGACAATGGTTCAATAAACAATAAAAAAGAATTTCGTGCCAAAAAATTTTTCAACATTTTCTCAAAATCAAAATTTCATATTTCAAGCTAAAATTTTTTTGAATTTTTCAGGCCACAAGCATGTACTCTCAAATTTTGGCGACAACTCTACTAATTTCCTTCATTGTGATAGCTAAT</canonical>
            <polymorphic>GTCAATTTTAATCGTAGTTTGGTCGAATAACCGAAAATTTTATGATCGAATTCATTTCATACAGATTTCACTCCTAAATGTAGAATTTTCAAACTATATTTCATATTGGATTTTGCATGAAAATTTTCAAGAATAATTTTATAAACTTACAAATCAATGTATTTTAAAAGTTAGCCTAGAAATCCTAATATTTCTAGCGAAATTTTTTTCAGTTAGATTGGCATGACACTATTGCAAAACTCTATTTTTCATTTTTGTTTTTTTTAAAGCTTCAGTTTCTACCGCTATGTTTCACTCACAGTACCGGTCATTAAGAAATACAAAAACGTATATTTCAGTTGATTTTGACCATTTTCAAAAGTCTAGAGCTCGGCTTTTAAGTTTGCGATCCCTTTGGAAGTTATGGAACGTATGAAACAGATCTAGATTGAACATTTTGTTTTAACTTTCAAAAATTTTGCGAATTTTTGAAAAATTTCTAGTTTTTCAGATGGATGCCWATTTCTGAAAAACACCCGTTTTTTCACGTTTTCAGGACAATGGACTGAGAAGGGGTGTCCTTCAGAAATTGGCAAAAAGCTGAAAAACTAGGAATGTTCGAAAATTATGTAAACGCAAATTGTTCAATCTAGGTCTGTTTTACATCCTCCAAAATTTTCAAAGTGATCGGAAAATTGACAACCAAGTTCCAGATCCCTAAAATACCTAAAATCAAGTGAAAAATAAGTTTTTGTGTATCTCATCAACATGTACTGTACATTTTTATTCTTATTATTAGTTAGATAATAATTTGATTAGATCAGCCTTGGGGTCCGATCGGCGTAGACAATGGTTCAATAAACAATAAAAAAGAATTTCGTGCCAAAAAATTTTTCAACATTTTCTCAAAATCAAAATTTCATATTTCAAGCTAAAATTTTTTTGAATTTTTCAGGCCACAAGCATGTACTCTCAAATTTTGGCGACAACTCTACTAATTTCCTTCATTGTGATAGCTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTCTACCGCTATGTTTCACT</pcr_primer_p1>
		<pcr_primer_p2>CAAGGCTGATCTAATCAAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>534</pcr_amplicon_size>
		<canonical_amplicon>GTTTCTACCGCTATGTTTCACTCACAGTACCGGTCATTAAGAAATACAAAAACGTATATTTCAGTTGATTTTGACCATTTTCAAAAGTCTAGAGCTCGGCTTTTAAGTTTGCGATCCCTTTGGAAGTTATGGAACGTATGAAACAGATCTAGATTGAACATTTTGTTTTAACTTTCAAAAATTTTGCGAATTTTTGAAAAATTTCTAGTTTTTCAGATGGATGCCTATTTCTGAAAAACACCCGTTTTTTCACGTTTTCAGGACAATGGACTGAGAAGGGGTGTCCTTCAGAAATTGGCAAAAAGCTGAAAAACTAGGAATGTTCGAAAATTATGTAAACGCAAATTGTTCAATCTAGGTCTGTTTTACATCCTCCAAAATTTTCAAAGTGATCGGAAAATTGACAACCAAGTTCCAGATCCCTAAAATACCTAAAATCAAGTGAAAAATAAGTTTTTGTGTATCTCATCAACATGTACTGTACATTTTTATTCTTATTATTAGTTAGATAATAATTTGATTAGATCAGCCTTG</canonical_amplicon>
		<polymorphic_amplicon>GTTTCTACCGCTATGTTTCACTCACAGTACCGGTCATTAAGAAATACAAAAACGTATATTTCAGTTGATTTTGACCATTTTCAAAAGTCTAGAGCTCGGCTTTTAAGTTTGCGATCCCTTTGGAAGTTATGGAACGTATGAAACAGATCTAGATTGAACATTTTGTTTTAACTTTCAAAAATTTTGCGAATTTTTGAAAAATTTCTAGTTTTTCAGATGGATGCCWATTTCTGAAAAACACCCGTTTTTTCACGTTTTCAGGACAATGGACTGAGAAGGGGTGTCCTTCAGAAATTGGCAAAAAGCTGAAAAACTAGGAATGTTCGAAAATTATGTAAACGCAAATTGTTCAATCTAGGTCTGTTTTACATCCTCCAAAATTTTCAAAGTGATCGGAAAATTGACAACCAAGTTCCAGATCCCTAAAATACCTAAAATCAAGTGAAAAATAAGTTTTTGTGTATCTCATCAACATGTACTGTACATTTTTATTCTTATTATTAGTTAGATAATAATTTGATTAGATCAGCCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37850</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>318690</contig_pos>
        <strand></strand>
        <context>aatggactga[G/A]aaggggtgtc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTATTTCTGAAAAACACCCGTTTTTTCACGTTTTCAGGACAATGGACTGA</left_flank>
        <right_flank>AAGGGGTGTCCTTCAGAAATTGGCAAAAAGCTGAAAAACTAGGAATGTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCATTTCATACAGATTTCACTCCTAAATGTAGAATTTTCAAACTATATTTCATATTGGATTTTGCATGAAAATTTTCAAGAATAATTTTATAAACTTACAAATCAATGTATTTTAAAAGTTAGCCTAGAAATCCTAATATTTCTAGCGAAATTTTTTTCAGTTAGATTGGCATGACACTATTGCAAAACTCTATTTTTCATTTTTGTTTTTTTTAAAGCTTCAGTTTCTACCGCTATGTTTCACTCACAGTACCGGTCATTAAGAAATACAAAAACGTATATTTCAGTTGATTTTGACCATTTTCAAAAGTCTAGAGCTCGGCTTTTAAGTTTGCGATCCCTTTGGAAGTTATGGAACGTATGAAACAGATCTAGATTGAACATTTTGTTTTAACTTTCAAAAATTTTGCGAATTTTTGAAAAATTTCTAGTTTTTCAGATGGATGCCTATTTCTGAAAAACACCCGTTTTTTCACGTTTTCAGGACAATGGACTGAGAAGGGGTGTCCTTCAGAAATTGGCAAAAAGCTGAAAAACTAGGAATGTTCGAAAATTATGTAAACGCAAATTGTTCAATCTAGGTCTGTTTTACATCCTCCAAAATTTTCAAAGTGATCGGAAAATTGACAACCAAGTTCCAGATCCCTAAAATACCTAAAATCAAGTGAAAAATAAGTTTTTGTGTATCTCATCAACATGTACTGTACATTTTTATTCTTATTATTAGTTAGATAATAATTTGATTAGATCAGCCTTGGGGTCCGATCGGCGTAGACAATGGTTCAATAAACAATAAAAAAGAATTTCGTGCCAAAAAATTTTTCAACATTTTCTCAAAATCAAAATTTCATATTTCAAGCTAAAATTTTTTTGAATTTTTCAGGCCACAAGCATGTACTCTCAAATTTTGGCGACAACTCTACTAATTTCCTTCATTGTGATAGCTAATCAATGTGCTGCCACGGGTGGCACCACCACTCCAACTAGTAAGTTTTTGA</canonical>
            <polymorphic>ATTCATTTCATACAGATTTCACTCCTAAATGTAGAATTTTCAAACTATATTTCATATTGGATTTTGCATGAAAATTTTCAAGAATAATTTTATAAACTTACAAATCAATGTATTTTAAAAGTTAGCCTAGAAATCCTAATATTTCTAGCGAAATTTTTTTCAGTTAGATTGGCATGACACTATTGCAAAACTCTATTTTTCATTTTTGTTTTTTTTAAAGCTTCAGTTTCTACCGCTATGTTTCACTCACAGTACCGGTCATTAAGAAATACAAAAACGTATATTTCAGTTGATTTTGACCATTTTCAAAAGTCTAGAGCTCGGCTTTTAAGTTTGCGATCCCTTTGGAAGTTATGGAACGTATGAAACAGATCTAGATTGAACATTTTGTTTTAACTTTCAAAAATTTTGCGAATTTTTGAAAAATTTCTAGTTTTTCAGATGGATGCCTATTTCTGAAAAACACCCGTTTTTTCACGTTTTCAGGACAATGGACTGARAAGGGGTGTCCTTCAGAAATTGGCAAAAAGCTGAAAAACTAGGAATGTTCGAAAATTATGTAAACGCAAATTGTTCAATCTAGGTCTGTTTTACATCCTCCAAAATTTTCAAAGTGATCGGAAAATTGACAACCAAGTTCCAGATCCCTAAAATACCTAAAATCAAGTGAAAAATAAGTTTTTGTGTATCTCATCAACATGTACTGTACATTTTTATTCTTATTATTAGTTAGATAATAATTTGATTAGATCAGCCTTGGGGTCCGATCGGCGTAGACAATGGTTCAATAAACAATAAAAAAGAATTTCGTGCCAAAAAATTTTTCAACATTTTCTCAAAATCAAAATTTCATATTTCAAGCTAAAATTTTTTTGAATTTTTCAGGCCACAAGCATGTACTCTCAAATTTTGGCGACAACTCTACTAATTTCCTTCATTGTGATAGCTAATCAATGTGCTGCCACGGGTGGCACCACCACTCCAACTAGTAAGTTTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTCTACCGCTATGTTTCACT</pcr_primer_p1>
		<pcr_primer_p2>CAAGGCTGATCTAATCAAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>534</pcr_amplicon_size>
		<canonical_amplicon>GTTTCTACCGCTATGTTTCACTCACAGTACCGGTCATTAAGAAATACAAAAACGTATATTTCAGTTGATTTTGACCATTTTCAAAAGTCTAGAGCTCGGCTTTTAAGTTTGCGATCCCTTTGGAAGTTATGGAACGTATGAAACAGATCTAGATTGAACATTTTGTTTTAACTTTCAAAAATTTTGCGAATTTTTGAAAAATTTCTAGTTTTTCAGATGGATGCCTATTTCTGAAAAACACCCGTTTTTTCACGTTTTCAGGACAATGGACTGAGAAGGGGTGTCCTTCAGAAATTGGCAAAAAGCTGAAAAACTAGGAATGTTCGAAAATTATGTAAACGCAAATTGTTCAATCTAGGTCTGTTTTACATCCTCCAAAATTTTCAAAGTGATCGGAAAATTGACAACCAAGTTCCAGATCCCTAAAATACCTAAAATCAAGTGAAAAATAAGTTTTTGTGTATCTCATCAACATGTACTGTACATTTTTATTCTTATTATTAGTTAGATAATAATTTGATTAGATCAGCCTTG</canonical_amplicon>
		<polymorphic_amplicon>GTTTCTACCGCTATGTTTCACTCACAGTACCGGTCATTAAGAAATACAAAAACGTATATTTCAGTTGATTTTGACCATTTTCAAAAGTCTAGAGCTCGGCTTTTAAGTTTGCGATCCCTTTGGAAGTTATGGAACGTATGAAACAGATCTAGATTGAACATTTTGTTTTAACTTTCAAAAATTTTGCGAATTTTTGAAAAATTTCTAGTTTTTCAGATGGATGCCTATTTCTGAAAAACACCCGTTTTTTCACGTTTTCAGGACAATGGACTGARAAGGGGTGTCCTTCAGAAATTGGCAAAAAGCTGAAAAACTAGGAATGTTCGAAAATTATGTAAACGCAAATTGTTCAATCTAGGTCTGTTTTACATCCTCCAAAATTTTCAAAGTGATCGGAAAATTGACAACCAAGTTCCAGATCCCTAAAATACCTAAAATCAAGTGAAAAATAAGTTTTTGTGTATCTCATCAACATGTACTGTACATTTTTATTCTTATTATTAGTTAGATAATAATTTGATTAGATCAGCCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37851</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>318857</contig_pos>
        <strand></strand>
        <context>ctaaaatcaa[G/C]tgaaaaataa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>ATCGGAAAATTGACAACCAAGTTCCAGATCCCTAAAATACCTAAAATCAA</left_flank>
        <right_flank>TGAAAAATAAGTTTTTGTGTATCTCATCAACATGTACTGTACATTTTTAT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGGCATGACACTATTGCAAAACTCTATTTTTCATTTTTGTTTTTTTTAAAGCTTCAGTTTCTACCGCTATGTTTCACTCACAGTACCGGTCATTAAGAAATACAAAAACGTATATTTCAGTTGATTTTGACCATTTTCAAAAGTCTAGAGCTCGGCTTTTAAGTTTGCGATCCCTTTGGAAGTTATGGAACGTATGAAACAGATCTAGATTGAACATTTTGTTTTAACTTTCAAAAATTTTGCGAATTTTTGAAAAATTTCTAGTTTTTCAGATGGATGCCTATTTCTGAAAAACACCCGTTTTTTCACGTTTTCAGGACAATGGACTGAGAAGGGGTGTCCTTCAGAAATTGGCAAAAAGCTGAAAAACTAGGAATGTTCGAAAATTATGTAAACGCAAATTGTTCAATCTAGGTCTGTTTTACATCCTCCAAAATTTTCAAAGTGATCGGAAAATTGACAACCAAGTTCCAGATCCCTAAAATACCTAAAATCAAGTGAAAAATAAGTTTTTGTGTATCTCATCAACATGTACTGTACATTTTTATTCTTATTATTAGTTAGATAATAATTTGATTAGATCAGCCTTGGGGTCCGATCGGCGTAGACAATGGTTCAATAAACAATAAAAAAGAATTTCGTGCCAAAAAATTTTTCAACATTTTCTCAAAATCAAAATTTCATATTTCAAGCTAAAATTTTTTTGAATTTTTCAGGCCACAAGCATGTACTCTCAAATTTTGGCGACAACTCTACTAATTTCCTTCATTGTGATAGCTAATCAATGTGCTGCCACGGGTGGCACCACCACTCCAACTAGTAAGTTTTTGATGTACAGTAATCTATGCAAAAATTCCTAATTTTTCAGCCACCACCACCGCCACAGTGACAACAACCGCAGCACCTACCACGACAGTAGCCACGGGTAAAACTCGCTTTTTTTTTGTTAATGAAGTTTTCCAAGTTTTCCTTCGAATCCTTTCCTCTTATTTCCACGC</canonical>
            <polymorphic>ATTGGCATGACACTATTGCAAAACTCTATTTTTCATTTTTGTTTTTTTTAAAGCTTCAGTTTCTACCGCTATGTTTCACTCACAGTACCGGTCATTAAGAAATACAAAAACGTATATTTCAGTTGATTTTGACCATTTTCAAAAGTCTAGAGCTCGGCTTTTAAGTTTGCGATCCCTTTGGAAGTTATGGAACGTATGAAACAGATCTAGATTGAACATTTTGTTTTAACTTTCAAAAATTTTGCGAATTTTTGAAAAATTTCTAGTTTTTCAGATGGATGCCTATTTCTGAAAAACACCCGTTTTTTCACGTTTTCAGGACAATGGACTGAGAAGGGGTGTCCTTCAGAAATTGGCAAAAAGCTGAAAAACTAGGAATGTTCGAAAATTATGTAAACGCAAATTGTTCAATCTAGGTCTGTTTTACATCCTCCAAAATTTTCAAAGTGATCGGAAAATTGACAACCAAGTTCCAGATCCCTAAAATACCTAAAATCAASTGAAAAATAAGTTTTTGTGTATCTCATCAACATGTACTGTACATTTTTATTCTTATTATTAGTTAGATAATAATTTGATTAGATCAGCCTTGGGGTCCGATCGGCGTAGACAATGGTTCAATAAACAATAAAAAAGAATTTCGTGCCAAAAAATTTTTCAACATTTTCTCAAAATCAAAATTTCATATTTCAAGCTAAAATTTTTTTGAATTTTTCAGGCCACAAGCATGTACTCTCAAATTTTGGCGACAACTCTACTAATTTCCTTCATTGTGATAGCTAATCAATGTGCTGCCACGGGTGGCACCACCACTCCAACTAGTAAGTTTTTGATGTACAGTAATCTATGCAAAAATTCCTAATTTTTCAGCCACCACCACCGCCACAGTGACAACAACCGCAGCACCTACCACGACAGTAGCCACGGGTAAAACTCGCTTTTTTTTTGTTAATGAAGTTTTCCAAGTTTTCCTTCGAATCCTTTCCTCTTATTTCCACGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>216 126 108 77 73 66 61 53 53 31 17 16 15 12 12 12 7 6 6 6 5 4 3 3 3 3 3 3</canonical_bands>
                <polymorphic_bands>216 126 108 77 73 70 66 61 53 31 16 15 12 12 12 7 6 6 6 5 4 3 3 3 3 3 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTTCTACCGCTATGTTTCACT</pcr_primer_p1>
		<pcr_primer_p2>CAAGGCTGATCTAATCAAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>534</pcr_amplicon_size>
		<canonical_amplicon>GTTTCTACCGCTATGTTTCACTCACAGTACCGGTCATTAAGAAATACAAAAACGTATATTTCAGTTGATTTTGACCATTTTCAAAAGTCTAGAGCTCGGCTTTTAAGTTTGCGATCCCTTTGGAAGTTATGGAACGTATGAAACAGATCTAGATTGAACATTTTGTTTTAACTTTCAAAAATTTTGCGAATTTTTGAAAAATTTCTAGTTTTTCAGATGGATGCCTATTTCTGAAAAACACCCGTTTTTTCACGTTTTCAGGACAATGGACTGAGAAGGGGTGTCCTTCAGAAATTGGCAAAAAGCTGAAAAACTAGGAATGTTCGAAAATTATGTAAACGCAAATTGTTCAATCTAGGTCTGTTTTACATCCTCCAAAATTTTCAAAGTGATCGGAAAATTGACAACCAAGTTCCAGATCCCTAAAATACCTAAAATCAAGTGAAAAATAAGTTTTTGTGTATCTCATCAACATGTACTGTACATTTTTATTCTTATTATTAGTTAGATAATAATTTGATTAGATCAGCCTTG</canonical_amplicon>
		<polymorphic_amplicon>GTTTCTACCGCTATGTTTCACTCACAGTACCGGTCATTAAGAAATACAAAAACGTATATTTCAGTTGATTTTGACCATTTTCAAAAGTCTAGAGCTCGGCTTTTAAGTTTGCGATCCCTTTGGAAGTTATGGAACGTATGAAACAGATCTAGATTGAACATTTTGTTTTAACTTTCAAAAATTTTGCGAATTTTTGAAAAATTTCTAGTTTTTCAGATGGATGCCTATTTCTGAAAAACACCCGTTTTTTCACGTTTTCAGGACAATGGACTGAGAAGGGGTGTCCTTCAGAAATTGGCAAAAAGCTGAAAAACTAGGAATGTTCGAAAATTATGTAAACGCAAATTGTTCAATCTAGGTCTGTTTTACATCCTCCAAAATTTTCAAAGTGATCGGAAAATTGACAACCAAGTTCCAGATCCCTAAAATACCTAAAATCAASTGAAAAATAAGTTTTTGTGTATCTCATCAACATGTACTGTACATTTTTATTCTTATTATTAGTTAGATAATAATTTGATTAGATCAGCCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37852</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>318880</contig_pos>
        <strand></strand>
        <context>ttttgtgtat[C/T]tcatcaacat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAGATCCCTAAAATACCTAAAATCAAGTGAAAAATAAGTTTTTGTGTAT</left_flank>
        <right_flank>TCATCAACATGTACTGTACATTTTTATTCTTATTATTAGTTAGATAATAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTATTTTTCATTTTTGTTTTTTTTAAAGCTTCAGTTTCTACCGCTATGTTTCACTCACAGTACCGGTCATTAAGAAATACAAAAACGTATATTTCAGTTGATTTTGACCATTTTCAAAAGTCTAGAGCTCGGCTTTTAAGTTTGCGATCCCTTTGGAAGTTATGGAACGTATGAAACAGATCTAGATTGAACATTTTGTTTTAACTTTCAAAAATTTTGCGAATTTTTGAAAAATTTCTAGTTTTTCAGATGGATGCCTATTTCTGAAAAACACCCGTTTTTTCACGTTTTCAGGACAATGGACTGAGAAGGGGTGTCCTTCAGAAATTGGCAAAAAGCTGAAAAACTAGGAATGTTCGAAAATTATGTAAACGCAAATTGTTCAATCTAGGTCTGTTTTACATCCTCCAAAATTTTCAAAGTGATCGGAAAATTGACAACCAAGTTCCAGATCCCTAAAATACCTAAAATCAAGTGAAAAATAAGTTTTTGTGTATCTCATCAACATGTACTGTACATTTTTATTCTTATTATTAGTTAGATAATAATTTGATTAGATCAGCCTTGGGGTCCGATCGGCGTAGACAATGGTTCAATAAACAATAAAAAAGAATTTCGTGCCAAAAAATTTTTCAACATTTTCTCAAAATCAAAATTTCATATTTCAAGCTAAAATTTTTTTGAATTTTTCAGGCCACAAGCATGTACTCTCAAATTTTGGCGACAACTCTACTAATTTCCTTCATTGTGATAGCTAATCAATGTGCTGCCACGGGTGGCACCACCACTCCAACTAGTAAGTTTTTGATGTACAGTAATCTATGCAAAAATTCCTAATTTTTCAGCCACCACCACCGCCACAGTGACAACAACCGCAGCACCTACCACGACAGTAGCCACGGGTAAAACTCGCTTTTTTTTTGTTAATGAAGTTTTCCAAGTTTTCCTTCGAATCCTTTCCTCTTATTTCCACGCAGACAAATTCCAATTTGTCGTCC</canonical>
            <polymorphic>CTCTATTTTTCATTTTTGTTTTTTTTAAAGCTTCAGTTTCTACCGCTATGTTTCACTCACAGTACCGGTCATTAAGAAATACAAAAACGTATATTTCAGTTGATTTTGACCATTTTCAAAAGTCTAGAGCTCGGCTTTTAAGTTTGCGATCCCTTTGGAAGTTATGGAACGTATGAAACAGATCTAGATTGAACATTTTGTTTTAACTTTCAAAAATTTTGCGAATTTTTGAAAAATTTCTAGTTTTTCAGATGGATGCCTATTTCTGAAAAACACCCGTTTTTTCACGTTTTCAGGACAATGGACTGAGAAGGGGTGTCCTTCAGAAATTGGCAAAAAGCTGAAAAACTAGGAATGTTCGAAAATTATGTAAACGCAAATTGTTCAATCTAGGTCTGTTTTACATCCTCCAAAATTTTCAAAGTGATCGGAAAATTGACAACCAAGTTCCAGATCCCTAAAATACCTAAAATCAAGTGAAAAATAAGTTTTTGTGTATYTCATCAACATGTACTGTACATTTTTATTCTTATTATTAGTTAGATAATAATTTGATTAGATCAGCCTTGGGGTCCGATCGGCGTAGACAATGGTTCAATAAACAATAAAAAAGAATTTCGTGCCAAAAAATTTTTCAACATTTTCTCAAAATCAAAATTTCATATTTCAAGCTAAAATTTTTTTGAATTTTTCAGGCCACAAGCATGTACTCTCAAATTTTGGCGACAACTCTACTAATTTCCTTCATTGTGATAGCTAATCAATGTGCTGCCACGGGTGGCACCACCACTCCAACTAGTAAGTTTTTGATGTACAGTAATCTATGCAAAAATTCCTAATTTTTCAGCCACCACCACCGCCACAGTGACAACAACCGCAGCACCTACCACGACAGTAGCCACGGGTAAAACTCGCTTTTTTTTTGTTAATGAAGTTTTCCAAGTTTTCCTTCGAATCCTTTCCTCTTATTTCCACGCAGACAAATTCCAATTTGTCGTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTCTACCGCTATGTTTCACT</pcr_primer_p1>
		<pcr_primer_p2>CAAGGCTGATCTAATCAAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>534</pcr_amplicon_size>
		<canonical_amplicon>GTTTCTACCGCTATGTTTCACTCACAGTACCGGTCATTAAGAAATACAAAAACGTATATTTCAGTTGATTTTGACCATTTTCAAAAGTCTAGAGCTCGGCTTTTAAGTTTGCGATCCCTTTGGAAGTTATGGAACGTATGAAACAGATCTAGATTGAACATTTTGTTTTAACTTTCAAAAATTTTGCGAATTTTTGAAAAATTTCTAGTTTTTCAGATGGATGCCTATTTCTGAAAAACACCCGTTTTTTCACGTTTTCAGGACAATGGACTGAGAAGGGGTGTCCTTCAGAAATTGGCAAAAAGCTGAAAAACTAGGAATGTTCGAAAATTATGTAAACGCAAATTGTTCAATCTAGGTCTGTTTTACATCCTCCAAAATTTTCAAAGTGATCGGAAAATTGACAACCAAGTTCCAGATCCCTAAAATACCTAAAATCAAGTGAAAAATAAGTTTTTGTGTATCTCATCAACATGTACTGTACATTTTTATTCTTATTATTAGTTAGATAATAATTTGATTAGATCAGCCTTG</canonical_amplicon>
		<polymorphic_amplicon>GTTTCTACCGCTATGTTTCACTCACAGTACCGGTCATTAAGAAATACAAAAACGTATATTTCAGTTGATTTTGACCATTTTCAAAAGTCTAGAGCTCGGCTTTTAAGTTTGCGATCCCTTTGGAAGTTATGGAACGTATGAAACAGATCTAGATTGAACATTTTGTTTTAACTTTCAAAAATTTTGCGAATTTTTGAAAAATTTCTAGTTTTTCAGATGGATGCCTATTTCTGAAAAACACCCGTTTTTTCACGTTTTCAGGACAATGGACTGAGAAGGGGTGTCCTTCAGAAATTGGCAAAAAGCTGAAAAACTAGGAATGTTCGAAAATTATGTAAACGCAAATTGTTCAATCTAGGTCTGTTTTACATCCTCCAAAATTTTCAAAGTGATCGGAAAATTGACAACCAAGTTCCAGATCCCTAAAATACCTAAAATCAAGTGAAAAATAAGTTTTTGTGTATYTCATCAACATGTACTGTACATTTTTATTCTTATTATTAGTTAGATAATAATTTGATTAGATCAGCCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37853</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>319064</contig_pos>
        <strand>+</strand>
        <context>AAAATTTTTT[A/T]RAATTTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCAACATTTTCTCAAAATCAAAATTTCATATTTCAAGCTAAAATTTTTT</left_flank>
        <right_flank>GAATTTTTCAGGCCACAAGCATGTACTCTCAAATTTTGGCGACAACTCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGATTGAACATTTTGTTTTAACTTTCAAAAATTTTGCGAATTTTTGAAAAATTTCTAGTTTTTCAGATGGATGCCTATTTCTGAAAAACACCCGTTTTTTCACGTTTTCAGGACAATGGACTGAGAAGGGGTGTCCTTCAGAAATTGGCAAAAAGCTGAAAAACTAGGAATGTTCGAAAATTATGTAAACGCAAATTGTTCAATCTAGGTCTGTTTTACATCCTCCAAAATTTTCAAAGTGATCGGAAAATTGACAACCAAGTTCCAGATCCCTAAAATACCTAAAATCAAGTGAAAAATAAGTTTTTGTGTATCTCATCAACATGTACTGTACATTTTTATTCTTATTATTAGTTAGATAATAATTTGATTAGATCAGCCTTGGGGTCCGATCGGCGTAGACAATGGTTCAATAAACAATAAAAAAGAATTTCGTGCCAAAAAATTTTTCAACATTTTCTCAAAATCAAAATTTCATATTTCAAGCTAAAATTTTTTTGAATTTTTCAGGCCACAAGCATGTACTCTCAAATTTTGGCGACAACTCTACTAATTTCCTTCATTGTGATAGCTAATCAATGTGCTGCCACGGGTGGCACCACCACTCCAACTAGTAAGTTTTTGATGTACAGTAATCTATGCAAAAATTCCTAATTTTTCAGCCACCACCACCGCCACAGTGACAACAACCGCAGCACCTACCACGACAGTAGCCACGGGTAAAACTCGCTTTTTTTTTGTTAATGAAGTTTTCCAAGTTTTCCTTCGAATCCTTTCCTCTTATTTCCACGCAGACAAATTCCAATTTGTCGTCCCCTCTGACCTCTTGTATTCCAATCAAATGTGGTAGAAAGGAAGAAAGAATTAGAAGTGGTAAAGACATATGCGTATAAATACGTTCTTACTGTTTTGGGTCAACTAACGCTATTCACTTTTTTTGCAGCCTGCGCAACATGTACTGTAGATCAAATCATTATTACCACTGGAAACGATGGAGAC</canonical>
            <polymorphic>TAGATTGAACATTTTGTTTTAACTTTCAAAAATTTTGCGAATTTTTGAAAAATTTCTAGTTTTTCAGATGGATGCCTATTTCTGAAAAACACCCGTTTTTTCACGTTTTCAGGACAATGGACTGAGAAGGGGTGTCCTTCAGAAATTGGCAAAAAGCTGAAAAACTAGGAATGTTCGAAAATTATGTAAACGCAAATTGTTCAATCTAGGTCTGTTTTACATCCTCCAAAATTTTCAAAGTGATCGGAAAATTGACAACCAAGTTCCAGATCCCTAAAATACCTAAAATCAAGTGAAAAATAAGTTTTTGTGTATCTCATCAACATGTACTGTACATTTTTATTCTTATTATTAGTTAGATAATAATTTGATTAGATCAGCCTTGGGGTCCGATCGGCGTAGACAATGGTTCAATAAACAATAAAAAAGAATTTCGTGCCAAAAAATTTTTCAACATTTTCTCAAAATCAAAATTTCATATTTCAAGCTAAAATTTTTTWGAATTTTTCAGGCCACAAGCATGTACTCTCAAATTTTGGCGACAACTCTACTAATTTCCTTCATTGTGATAGCTAATCAATGTGCTGCCACGGGTGGCACCACCACTCCAACTAGTAAGTTTTTGATGTACAGTAATCTATGCAAAAATTCCTAATTTTTCAGCCACCACCACCGCCACAGTGACAACAACCGCAGCACCTACCACGACAGTAGCCACGGGTAAAACTCGCTTTTTTTTTGTTAATGAAGTTTTCCAAGTTTTCCTTCGAATCCTTTCCTCTTATTTCCACGCAGACAAATTCCAATTTGTCGTCCCCTCTGACCTCTTGTATTCCAATCAAATGTGGTAGAAAGGAAGAAAGAATTAGAAGTGGTAAAGACATATGCGTATAAATACGTTCTTACTGTTTTGGGTCAACTAACGCTATTCACTTTTTTTGCAGCCTGCGCAACATGTACTGTAGATCAAATCATTATTACCACTGGAAACGATGGAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGTAGACAATGGTTCAATAA</pcr_primer_p1>
		<pcr_primer_p2>TGCATAGATTACTGTACATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCGTAGACAATGGTTCAATAAACAATAAAAAAGAATTTCGTGCCAAAAAATTTTTCAACATTTTCTCAAAATCAAAATTTCATATTTCAAGCTAAAATTTTTTTGAATTTTTCAGGCCACAAGCATGTACTCTCAAATTTTGGCGACAACTCTACTAATTTCCTTCATTGTGATAGCTAATCAATGTGCTGCCACGGGTGGCACCACCACTCCAACTAGTAAGTTTTTGATGTACAGTAATCTATGCA</canonical_amplicon>
		<polymorphic_amplicon>GCGTAGACAATGGTTCAATAAACAATAAAAAAGAATTTCGTGCCAAAAAATTTTTCAACATTTTCTCAAAATCAAAATTTCATATTTCAAGCTAAAATTTTTTWGAATTTTTCAGGCCACAAGCATGTACTCTCAAATTTTGGCGACAACTCTACTAATTTCCTTCATTGTGATAGCTAATCAATGTGCTGCCACGGGTGGCACCACCACTCCAACTAGTAAGTTTTTGATGTACAGTAATCTATGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37854</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>319065</contig_pos>
        <strand>+</strand>
        <context>AAATTTTTTW[A/G]AATTTTTCAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAACATTTTCTCAAAATCAAAATTTCATATTTCAAGCTAAAATTTTTTT</left_flank>
        <right_flank>AATTTTTCAGGCCACAAGCATGTACTCTCAAATTTTGGCGACAACTCTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATTGAACATTTTGTTTTAACTTTCAAAAATTTTGCGAATTTTTGAAAAATTTCTAGTTTTTCAGATGGATGCCTATTTCTGAAAAACACCCGTTTTTTCACGTTTTCAGGACAATGGACTGAGAAGGGGTGTCCTTCAGAAATTGGCAAAAAGCTGAAAAACTAGGAATGTTCGAAAATTATGTAAACGCAAATTGTTCAATCTAGGTCTGTTTTACATCCTCCAAAATTTTCAAAGTGATCGGAAAATTGACAACCAAGTTCCAGATCCCTAAAATACCTAAAATCAAGTGAAAAATAAGTTTTTGTGTATCTCATCAACATGTACTGTACATTTTTATTCTTATTATTAGTTAGATAATAATTTGATTAGATCAGCCTTGGGGTCCGATCGGCGTAGACAATGGTTCAATAAACAATAAAAAAGAATTTCGTGCCAAAAAATTTTTCAACATTTTCTCAAAATCAAAATTTCATATTTCAAGCTAAAATTTTTTTGAATTTTTCAGGCCACAAGCATGTACTCTCAAATTTTGGCGACAACTCTACTAATTTCCTTCATTGTGATAGCTAATCAATGTGCTGCCACGGGTGGCACCACCACTCCAACTAGTAAGTTTTTGATGTACAGTAATCTATGCAAAAATTCCTAATTTTTCAGCCACCACCACCGCCACAGTGACAACAACCGCAGCACCTACCACGACAGTAGCCACGGGTAAAACTCGCTTTTTTTTTGTTAATGAAGTTTTCCAAGTTTTCCTTCGAATCCTTTCCTCTTATTTCCACGCAGACAAATTCCAATTTGTCGTCCCCTCTGACCTCTTGTATTCCAATCAAATGTGGTAGAAAGGAAGAAAGAATTAGAAGTGGTAAAGACATATGCGTATAAATACGTTCTTACTGTTTTGGGTCAACTAACGCTATTCACTTTTTTTGCAGCCTGCGCAACATGTACTGTAGATCAAATCATTATTACCACTGGAAACGATGGAGACT</canonical>
            <polymorphic>AGATTGAACATTTTGTTTTAACTTTCAAAAATTTTGCGAATTTTTGAAAAATTTCTAGTTTTTCAGATGGATGCCTATTTCTGAAAAACACCCGTTTTTTCACGTTTTCAGGACAATGGACTGAGAAGGGGTGTCCTTCAGAAATTGGCAAAAAGCTGAAAAACTAGGAATGTTCGAAAATTATGTAAACGCAAATTGTTCAATCTAGGTCTGTTTTACATCCTCCAAAATTTTCAAAGTGATCGGAAAATTGACAACCAAGTTCCAGATCCCTAAAATACCTAAAATCAAGTGAAAAATAAGTTTTTGTGTATCTCATCAACATGTACTGTACATTTTTATTCTTATTATTAGTTAGATAATAATTTGATTAGATCAGCCTTGGGGTCCGATCGGCGTAGACAATGGTTCAATAAACAATAAAAAAGAATTTCGTGCCAAAAAATTTTTCAACATTTTCTCAAAATCAAAATTTCATATTTCAAGCTAAAATTTTTTTRAATTTTTCAGGCCACAAGCATGTACTCTCAAATTTTGGCGACAACTCTACTAATTTCCTTCATTGTGATAGCTAATCAATGTGCTGCCACGGGTGGCACCACCACTCCAACTAGTAAGTTTTTGATGTACAGTAATCTATGCAAAAATTCCTAATTTTTCAGCCACCACCACCGCCACAGTGACAACAACCGCAGCACCTACCACGACAGTAGCCACGGGTAAAACTCGCTTTTTTTTTGTTAATGAAGTTTTCCAAGTTTTCCTTCGAATCCTTTCCTCTTATTTCCACGCAGACAAATTCCAATTTGTCGTCCCCTCTGACCTCTTGTATTCCAATCAAATGTGGTAGAAAGGAAGAAAGAATTAGAAGTGGTAAAGACATATGCGTATAAATACGTTCTTACTGTTTTGGGTCAACTAACGCTATTCACTTTTTTTGCAGCCTGCGCAACATGTACTGTAGATCAAATCATTATTACCACTGGAAACGATGGAGACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>203 200 179 152 115 30 29 27 20 15 11 10 9</canonical_bands>
                <polymorphic_bands>203 200 179 152 115 40 29 27 20 15 11 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGTAGACAATGGTTCAATAA</pcr_primer_p1>
		<pcr_primer_p2>TGCATAGATTACTGTACATCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCGTAGACAATGGTTCAATAAACAATAAAAAAGAATTTCGTGCCAAAAAATTTTTCAACATTTTCTCAAAATCAAAATTTCATATTTCAAGCTAAAATTTTTTTGAATTTTTCAGGCCACAAGCATGTACTCTCAAATTTTGGCGACAACTCTACTAATTTCCTTCATTGTGATAGCTAATCAATGTGCTGCCACGGGTGGCACCACCACTCCAACTAGTAAGTTTTTGATGTACAGTAATCTATGCA</canonical_amplicon>
		<polymorphic_amplicon>GCGTAGACAATGGTTCAATAAACAATAAAAAAGAATTTCGTGCCAAAAAATTTTTCAACATTTTCTCAAAATCAAAATTTCATATTTCAAGCTAAAATTTTTTTRAATTTTTCAGGCCACAAGCATGTACTCTCAAATTTTGGCGACAACTCTACTAATTTCCTTCATTGTGATAGCTAATCAATGTGCTGCCACGGGTGGCACCACCACTCCAACTAGTAAGTTTTTGATGTACAGTAATCTATGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37855</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>320167</contig_pos>
        <strand>+</strand>
        <context>CTTTTGTATA[A/T]CACtcttgtc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCACTTGACGGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATA</left_flank>
        <right_flank>CACTCTTGTCCGGTGCTTATGAACCTTATGGCCGAAAATTTCTTTAAAGG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTTATACCTGTGAACGGACGCCGCAGGTGGCCACGGATGTTGTCTTGATTACTGTAAGTGGGATTTCAGATTTATCTATTAACTAACAAAGTGTTGATATCTGAAATAGAAAACGAGATACGGTGCCGGTCAAAAAGATGTATAACAACGTGTTTTTCAGTTGATTTTCAGTCAGTTTGACAATGTTCAGGAGTCTAGAGCTCGGCTGTCAAAGACCCAAGATTAAAAAATTTGCATTTACAAAACTTTTTAGAAGTTCCTTGTTTTTCAGTTATTTGCTAATTTCTGAAGGACACCGCATTTTTCCACTTTTGGTGCTGAAAACGCGAAAAAGGGAGGTATTCTTCATAAATCGGCAGATAAATAAAAAACTAGAAATTTTCAAAAATTTTTGTGAATGTAAAGTTTTTAGGTTAGTTCTGTTTTATAACCTACAAAAATGATCGGTCACTTGACGGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAACACTCTTGTCCGGTGCTTATGAACCTTATGGCCGAAAATTTCTTTAAAGGCGCATAGCAAGTTATGAAAAGGAAGCGGCTACAATTTAGTCAGGTAAATTTGTGCGCCTTACTACAGTAACTAGGAATTATTTTATTTTGGCCTATTTTAGGCAGTTTTCCTATTTAATAAGAAAATTCAGCTGATTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGA</canonical>
            <polymorphic>CACTTATACCTGTGAACGGACGCCGCAGGTGGCCACGGATGTTGTCTTGATTACTGTAAGTGGGATTTCAGATTTATCTATTAACTAACAAAGTGTTGATATCTGAAATAGAAAACGAGATACGGTGCCGGTCAAAAAGATGTATAACAACGTGTTTTTCAGTTGATTTTCAGTCAGTTTGACAATGTTCAGGAGTCTAGAGCTCGGCTGTCAAAGACCCAAGATTAAAAAATTTGCATTTACAAAACTTTTTAGAAGTTCCTTGTTTTTCAGTTATTTGCTAATTTCTGAAGGACACCGCATTTTTCCACTTTTGGTGCTGAAAACGCGAAAAAGGGAGGTATTCTTCATAAATCGGCAGATAAATAAAAAACTAGAAATTTTCAAAAATTTTTGTGAATGTAAAGTTTTTAGGTTAGTTCTGTTTTATAACCTACAAAAATGATCGGTCACTTGACGGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAWCACTCTTGTCCGGTGCTTATGAACCTTATGGCCGAAAATTTCTTTAAAGGCGCATAGCAAGTTATGAAAAGGAAGCGGCTACAATTTAGTCAGGTAAATTTGTGCGCCTTACTACAGTAACTAGGAATTATTTTATTTTGGCCTATTTTAGGCAGTTTTCCTATTTAATAAGAAAATTCAGCTGATTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATATCTGAAATAGAAAACGAGAT</pcr_primer_p1>
		<pcr_primer_p2>ACACAATTCATCACCACATTC</pcr_primer_p2>
		<pcr_amplicon_size>911</pcr_amplicon_size>
		<canonical_amplicon>TGATATCTGAAATAGAAAACGAGATACGGTGCCGGTCAAAAAGATGTATAACAACGTGTTTTTCAGTTGATTTTCAGTCAGTTTGACAATGTTCAGGAGTCTAGAGCTCGGCTGTCAAAGACCCAAGATTAAAAAATTTGCATTTACAAAACTTTTTAGAAGTTCCTTGTTTTTCAGTTATTTGCTAATTTCTGAAGGACACCGCATTTTTCCACTTTTGGTGCTGAAAACGCGAAAAAGGGAGGTATTCTTCATAAATCGGCAGATAAATAAAAAACTAGAAATTTTCAAAAATTTTTGTGAATGTAAAGTTTTTAGGTTAGTTCTGTTTTATAACCTACAAAAATGATCGGTCACTTGACGGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAACACTCTTGTCCGGTGCTTAT</canonical_amplicon>
		<polymorphic_amplicon>TGATATCTGAAATAGAAAACGAGATACGGTGCCGGTCAAAAAGATGTATAACAACGTGTTTTTCAGTTGATTTTCAGTCAGTTTGACAATGTTCAGGAGTCTAGAGCTCGGCTGTCAAAGACCCAAGATTAAAAAATTTGCATTTACAAAACTTTTTAGAAGTTCCTTGTTTTTCAGTTATTTGCTAATTTCTGAAGGACACCGCATTTTTCCACTTTTGGTGCTGAAAACGCGAAAAAGGGAGGTATTCTTCATAAATCGGCAGATAAATAAAAAACTAGAAATTTTCAAAAATTTTTGTGAATGTAAAGTTTTTAGGTTAGTTCTGTTTTATAACCTACAAAAATGATCGGTCACTTGACGGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAWCACTCTTGTCCGGTGCTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37856</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>320239</contig_pos>
        <strand></strand>
        <context>ttatgaaaag[G/C]aagcggctac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AACCTTATGGCCGAAAATTTCTTTAAAGGCGCATAGCAAGTTATGAAAAG</left_flank>
        <right_flank>AAGCGGCTACAATTTAGTCAGGTAAATTTGTGCGCCTTACTACAGTAACT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATCTATTAACTAACAAAGTGTTGATATCTGAAATAGAAAACGAGATACGGTGCCGGTCAAAAAGATGTATAACAACGTGTTTTTCAGTTGATTTTCAGTCAGTTTGACAATGTTCAGGAGTCTAGAGCTCGGCTGTCAAAGACCCAAGATTAAAAAATTTGCATTTACAAAACTTTTTAGAAGTTCCTTGTTTTTCAGTTATTTGCTAATTTCTGAAGGACACCGCATTTTTCCACTTTTGGTGCTGAAAACGCGAAAAAGGGAGGTATTCTTCATAAATCGGCAGATAAATAAAAAACTAGAAATTTTCAAAAATTTTTGTGAATGTAAAGTTTTTAGGTTAGTTCTGTTTTATAACCTACAAAAATGATCGGTCACTTGACGGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAACACTCTTGTCCGGTGCTTATGAACCTTATGGCCGAAAATTTCTTTAAAGGCGCATAGCAAGTTATGAAAAGGAAGCGGCTACAATTTAGTCAGGTAAATTTGTGCGCCTTACTACAGTAACTAGGAATTATTTTATTTTGGCCTATTTTAGGCAGTTTTCCTATTTAATAAGAAAATTCAGCTGATTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGTGGATGGTAACTGGGTGAAAGATGGTATTGTCATCAATGAGGTTGAGTGCCAAATCATTACCTAGA</canonical>
            <polymorphic>TTTATCTATTAACTAACAAAGTGTTGATATCTGAAATAGAAAACGAGATACGGTGCCGGTCAAAAAGATGTATAACAACGTGTTTTTCAGTTGATTTTCAGTCAGTTTGACAATGTTCAGGAGTCTAGAGCTCGGCTGTCAAAGACCCAAGATTAAAAAATTTGCATTTACAAAACTTTTTAGAAGTTCCTTGTTTTTCAGTTATTTGCTAATTTCTGAAGGACACCGCATTTTTCCACTTTTGGTGCTGAAAACGCGAAAAAGGGAGGTATTCTTCATAAATCGGCAGATAAATAAAAAACTAGAAATTTTCAAAAATTTTTGTGAATGTAAAGTTTTTAGGTTAGTTCTGTTTTATAACCTACAAAAATGATCGGTCACTTGACGGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAACACTCTTGTCCGGTGCTTATGAACCTTATGGCCGAAAATTTCTTTAAAGGCGCATAGCAAGTTATGAAAAGSAAGCGGCTACAATTTAGTCAGGTAAATTTGTGCGCCTTACTACAGTAACTAGGAATTATTTTATTTTGGCCTATTTTAGGCAGTTTTCCTATTTAATAAGAAAATTCAGCTGATTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGTGGATGGTAACTGGGTGAAAGATGGTATTGTCATCAATGAGGTTGAGTGCCAAATCATTACCTAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATATCTGAAATAGAAAACGAGAT</pcr_primer_p1>
		<pcr_primer_p2>ACACAATTCATCACCACATTC</pcr_primer_p2>
		<pcr_amplicon_size>911</pcr_amplicon_size>
		<canonical_amplicon>TGATATCTGAAATAGAAAACGAGATACGGTGCCGGTCAAAAAGATGTATAACAACGTGTTTTTCAGTTGATTTTCAGTCAGTTTGACAATGTTCAGGAGTCTAGAGCTCGGCTGTCAAAGACCCAAGATTAAAAAATTTGCATTTACAAAACTTTTTAGAAGTTCCTTGTTTTTCAGTTATTTGCTAATTTCTGAAGGACACCGCATTTTTCCACTTTTGGTGCTGAAAACGCGAAAAAGGGAGGTATTCTTCATAAATCGGCAGATAAATAAAAAACTAGAAATTTTCAAAAATTTTTGTGAATGTAAAGTTTTTAGGTTAGTTCTGTTTTATAACCTACAAAAATGATCGGTCACTTGACGGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAACACTCTTGTCCGGTGCTTATGAACCTTATGGCCGAAAATTTCTTTAAAGGCGCATAGCAAGTTATGAAAAGGAAGCGGCTACAATTTAGTCAGGTAAATTTGTGCGCCTTACTACAGTAACTAGGAATTATTTTATTTTGGCCTATTTTAGGCAGTTTTCCTATTTAATAAGAAAATTCAGCTGATTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGT</canonical_amplicon>
		<polymorphic_amplicon>TGATATCTGAAATAGAAAACGAGATACGGTGCCGGTCAAAAAGATGTATAACAACGTGTTTTTCAGTTGATTTTCAGTCAGTTTGACAATGTTCAGGAGTCTAGAGCTCGGCTGTCAAAGACCCAAGATTAAAAAATTTGCATTTACAAAACTTTTTAGAAGTTCCTTGTTTTTCAGTTATTTGCTAATTTCTGAAGGACACCGCATTTTTCCACTTTTGGTGCTGAAAACGCGAAAAAGGGAGGTATTCTTCATAAATCGGCAGATAAATAAAAAACTAGAAATTTTCAAAAATTTTTGTGAATGTAAAGTTTTTAGGTTAGTTCTGTTTTATAACCTACAAAAATGATCGGTCACTTGACGGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAACACTCTTGTCCGGTGCTTATGAACCTTATGGCCGAAAATTTCTTTAAAGGCGCATAGCAAGTTATGAAAAGSAAGCGGCTACAATTTAGTCAGGTAAATTTGTGCGCCTTACTACAGTAACTAGGAATTATTTTATTTTGGCCTATTTTAGGCAGTTTTCCTATTTAATAAGAAAATTCAGCTGATTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37857</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>320331</contig_pos>
        <strand></strand>
        <context>agttttccta[T/C]ttaataagaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACAGTAACTAGGAATTATTTTATTTTGGCCTATTTTAGGCAGTTTTCCTA</left_flank>
        <right_flank>TTAATAAGAAAATTCAGCTGATTATTTATGAGAATCTGAAGAATTTTAAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTTCAGTCAGTTTGACAATGTTCAGGAGTCTAGAGCTCGGCTGTCAAAGACCCAAGATTAAAAAATTTGCATTTACAAAACTTTTTAGAAGTTCCTTGTTTTTCAGTTATTTGCTAATTTCTGAAGGACACCGCATTTTTCCACTTTTGGTGCTGAAAACGCGAAAAAGGGAGGTATTCTTCATAAATCGGCAGATAAATAAAAAACTAGAAATTTTCAAAAATTTTTGTGAATGTAAAGTTTTTAGGTTAGTTCTGTTTTATAACCTACAAAAATGATCGGTCACTTGACGGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAACACTCTTGTCCGGTGCTTATGAACCTTATGGCCGAAAATTTCTTTAAAGGCGCATAGCAAGTTATGAAAAGGAAGCGGCTACAATTTAGTCAGGTAAATTTGTGCGCCTTACTACAGTAACTAGGAATTATTTTATTTTGGCCTATTTTAGGCAGTTTTCCTATTTAATAAGAAAATTCAGCTGATTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGTGGATGGTAACTGGGTGAAAGATGGTATTGTCATCAATGAGGTTGAGTGCCAAATCATTACCTAGACGGAATTTTAAGCCTCCAAAATGCTCAATATCACGGACACTAGGGATTGATGATAAGAAACCATTAACATTTATAATAATAATTAATCAAAT</canonical>
            <polymorphic>GATTTTCAGTCAGTTTGACAATGTTCAGGAGTCTAGAGCTCGGCTGTCAAAGACCCAAGATTAAAAAATTTGCATTTACAAAACTTTTTAGAAGTTCCTTGTTTTTCAGTTATTTGCTAATTTCTGAAGGACACCGCATTTTTCCACTTTTGGTGCTGAAAACGCGAAAAAGGGAGGTATTCTTCATAAATCGGCAGATAAATAAAAAACTAGAAATTTTCAAAAATTTTTGTGAATGTAAAGTTTTTAGGTTAGTTCTGTTTTATAACCTACAAAAATGATCGGTCACTTGACGGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAACACTCTTGTCCGGTGCTTATGAACCTTATGGCCGAAAATTTCTTTAAAGGCGCATAGCAAGTTATGAAAAGGAAGCGGCTACAATTTAGTCAGGTAAATTTGTGCGCCTTACTACAGTAACTAGGAATTATTTTATTTTGGCCTATTTTAGGCAGTTTTCCTAYTTAATAAGAAAATTCAGCTGATTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGTGGATGGTAACTGGGTGAAAGATGGTATTGTCATCAATGAGGTTGAGTGCCAAATCATTACCTAGACGGAATTTTAAGCCTCCAAAATGCTCAATATCACGGACACTAGGGATTGATGATAAGAAACCATTAACATTTATAATAATAATTAATCAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATATCTGAAATAGAAAACGAGAT</pcr_primer_p1>
		<pcr_primer_p2>ACACAATTCATCACCACATTC</pcr_primer_p2>
		<pcr_amplicon_size>911</pcr_amplicon_size>
		<canonical_amplicon>ATTTAATAAGAAAATTCAGCTGATTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGT</canonical_amplicon>
		<polymorphic_amplicon>AYTTAATAAGAAAATTCAGCTGATTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37858</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>320352</contig_pos>
        <strand></strand>
        <context>aattcagctg[A/T]ttatttatga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTGGCCTATTTTAGGCAGTTTTCCTATTTAATAAGAAAATTCAGCTG</left_flank>
        <right_flank>TTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTCAGGAGTCTAGAGCTCGGCTGTCAAAGACCCAAGATTAAAAAATTTGCATTTACAAAACTTTTTAGAAGTTCCTTGTTTTTCAGTTATTTGCTAATTTCTGAAGGACACCGCATTTTTCCACTTTTGGTGCTGAAAACGCGAAAAAGGGAGGTATTCTTCATAAATCGGCAGATAAATAAAAAACTAGAAATTTTCAAAAATTTTTGTGAATGTAAAGTTTTTAGGTTAGTTCTGTTTTATAACCTACAAAAATGATCGGTCACTTGACGGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAACACTCTTGTCCGGTGCTTATGAACCTTATGGCCGAAAATTTCTTTAAAGGCGCATAGCAAGTTATGAAAAGGAAGCGGCTACAATTTAGTCAGGTAAATTTGTGCGCCTTACTACAGTAACTAGGAATTATTTTATTTTGGCCTATTTTAGGCAGTTTTCCTATTTAATAAGAAAATTCAGCTGATTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGTGGATGGTAACTGGGTGAAAGATGGTATTGTCATCAATGAGGTTGAGTGCCAAATCATTACCTAGACGGAATTTTAAGCCTCCAAAATGCTCAATATCACGGACACTAGGGATTGATGATAAGAAACCATTAACATTTATAATAATAATTAATCAAATTTTCATAATACTGATATTAAT</canonical>
            <polymorphic>TGTTCAGGAGTCTAGAGCTCGGCTGTCAAAGACCCAAGATTAAAAAATTTGCATTTACAAAACTTTTTAGAAGTTCCTTGTTTTTCAGTTATTTGCTAATTTCTGAAGGACACCGCATTTTTCCACTTTTGGTGCTGAAAACGCGAAAAAGGGAGGTATTCTTCATAAATCGGCAGATAAATAAAAAACTAGAAATTTTCAAAAATTTTTGTGAATGTAAAGTTTTTAGGTTAGTTCTGTTTTATAACCTACAAAAATGATCGGTCACTTGACGGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAACACTCTTGTCCGGTGCTTATGAACCTTATGGCCGAAAATTTCTTTAAAGGCGCATAGCAAGTTATGAAAAGGAAGCGGCTACAATTTAGTCAGGTAAATTTGTGCGCCTTACTACAGTAACTAGGAATTATTTTATTTTGGCCTATTTTAGGCAGTTTTCCTATTTAATAAGAAAATTCAGCTGWTTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGTGGATGGTAACTGGGTGAAAGATGGTATTGTCATCAATGAGGTTGAGTGCCAAATCATTACCTAGACGGAATTTTAAGCCTCCAAAATGCTCAATATCACGGACACTAGGGATTGATGATAAGAAACCATTAACATTTATAATAATAATTAATCAAATTTTCATAATACTGATATTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATATCTGAAATAGAAAACGAGAT</pcr_primer_p1>
		<pcr_primer_p2>ACACAATTCATCACCACATTC</pcr_primer_p2>
		<pcr_amplicon_size>911</pcr_amplicon_size>
		<canonical_amplicon>GATTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGT</canonical_amplicon>
		<polymorphic_amplicon>GWTTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37859</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>320429</contig_pos>
        <strand></strand>
        <context>aaataattcc[G/C]aagtactgta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCC</left_flank>
        <right_flank>AAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTTTTTCAGTTATTTGCTAATTTCTGAAGGACACCGCATTTTTCCACTTTTGGTGCTGAAAACGCGAAAAAGGGAGGTATTCTTCATAAATCGGCAGATAAATAAAAAACTAGAAATTTTCAAAAATTTTTGTGAATGTAAAGTTTTTAGGTTAGTTCTGTTTTATAACCTACAAAAATGATCGGTCACTTGACGGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAACACTCTTGTCCGGTGCTTATGAACCTTATGGCCGAAAATTTCTTTAAAGGCGCATAGCAAGTTATGAAAAGGAAGCGGCTACAATTTAGTCAGGTAAATTTGTGCGCCTTACTACAGTAACTAGGAATTATTTTATTTTGGCCTATTTTAGGCAGTTTTCCTATTTAATAAGAAAATTCAGCTGATTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGTGGATGGTAACTGGGTGAAAGATGGTATTGTCATCAATGAGGTTGAGTGCCAAATCATTACCTAGACGGAATTTTAAGCCTCCAAAATGCTCAATATCACGGACACTAGGGATTGATGATAAGAAACCATTAACATTTATAATAATAATTAATCAAATTTTCATAATACTGATATTAATAATAACCATTCCTATAATAATAATATTAATTAATAAGCATTACTAACCCTAATGAATATTTCTTTGGTAATTTTTGA</canonical>
            <polymorphic>TTGTTTTTCAGTTATTTGCTAATTTCTGAAGGACACCGCATTTTTCCACTTTTGGTGCTGAAAACGCGAAAAAGGGAGGTATTCTTCATAAATCGGCAGATAAATAAAAAACTAGAAATTTTCAAAAATTTTTGTGAATGTAAAGTTTTTAGGTTAGTTCTGTTTTATAACCTACAAAAATGATCGGTCACTTGACGGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAACACTCTTGTCCGGTGCTTATGAACCTTATGGCCGAAAATTTCTTTAAAGGCGCATAGCAAGTTATGAAAAGGAAGCGGCTACAATTTAGTCAGGTAAATTTGTGCGCCTTACTACAGTAACTAGGAATTATTTTATTTTGGCCTATTTTAGGCAGTTTTCCTATTTAATAAGAAAATTCAGCTGATTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCSAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGTGGATGGTAACTGGGTGAAAGATGGTATTGTCATCAATGAGGTTGAGTGCCAAATCATTACCTAGACGGAATTTTAAGCCTCCAAAATGCTCAATATCACGGACACTAGGGATTGATGATAAGAAACCATTAACATTTATAATAATAATTAATCAAATTTTCATAATACTGATATTAATAATAACCATTCCTATAATAATAATATTAATTAATAAGCATTACTAACCCTAATGAATATTTCTTTGGTAATTTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>412 326 96 79 60 27</canonical_bands>
                <polymorphic_bands>412 326 156 79 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATATCTGAAATAGAAAACGAGAT</pcr_primer_p1>
		<pcr_primer_p2>ACACAATTCATCACCACATTC</pcr_primer_p2>
		<pcr_amplicon_size>911</pcr_amplicon_size>
		<canonical_amplicon>CGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGT</canonical_amplicon>
		<polymorphic_amplicon>CSAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37860</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>320463</contig_pos>
        <strand></strand>
        <context>aagttgtttg[T/C]aaaaatcgta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTG</left_flank>
        <right_flank>AAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCGCATTTTTCCACTTTTGGTGCTGAAAACGCGAAAAAGGGAGGTATTCTTCATAAATCGGCAGATAAATAAAAAACTAGAAATTTTCAAAAATTTTTGTGAATGTAAAGTTTTTAGGTTAGTTCTGTTTTATAACCTACAAAAATGATCGGTCACTTGACGGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAACACTCTTGTCCGGTGCTTATGAACCTTATGGCCGAAAATTTCTTTAAAGGCGCATAGCAAGTTATGAAAAGGAAGCGGCTACAATTTAGTCAGGTAAATTTGTGCGCCTTACTACAGTAACTAGGAATTATTTTATTTTGGCCTATTTTAGGCAGTTTTCCTATTTAATAAGAAAATTCAGCTGATTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGTGGATGGTAACTGGGTGAAAGATGGTATTGTCATCAATGAGGTTGAGTGCCAAATCATTACCTAGACGGAATTTTAAGCCTCCAAAATGCTCAATATCACGGACACTAGGGATTGATGATAAGAAACCATTAACATTTATAATAATAATTAATCAAATTTTCATAATACTGATATTAATAATAACCATTCCTATAATAATAATATTAATTAATAAGCATTACTAACCCTAATGAATATTTCTTTGGTAATTTTTGAACTCCATTTCTCCTTTTTTCCAAGAAGTTGACTA</canonical>
            <polymorphic>ACCGCATTTTTCCACTTTTGGTGCTGAAAACGCGAAAAAGGGAGGTATTCTTCATAAATCGGCAGATAAATAAAAAACTAGAAATTTTCAAAAATTTTTGTGAATGTAAAGTTTTTAGGTTAGTTCTGTTTTATAACCTACAAAAATGATCGGTCACTTGACGGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAACACTCTTGTCCGGTGCTTATGAACCTTATGGCCGAAAATTTCTTTAAAGGCGCATAGCAAGTTATGAAAAGGAAGCGGCTACAATTTAGTCAGGTAAATTTGTGCGCCTTACTACAGTAACTAGGAATTATTTTATTTTGGCCTATTTTAGGCAGTTTTCCTATTTAATAAGAAAATTCAGCTGATTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGYAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGTGGATGGTAACTGGGTGAAAGATGGTATTGTCATCAATGAGGTTGAGTGCCAAATCATTACCTAGACGGAATTTTAAGCCTCCAAAATGCTCAATATCACGGACACTAGGGATTGATGATAAGAAACCATTAACATTTATAATAATAATTAATCAAATTTTCATAATACTGATATTAATAATAACCATTCCTATAATAATAATATTAATTAATAAGCATTACTAACCCTAATGAATATTTCTTTGGTAATTTTTGAACTCCATTTCTCCTTTTTTCCAAGAAGTTGACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATATCTGAAATAGAAAACGAGAT</pcr_primer_p1>
		<pcr_primer_p2>ACACAATTCATCACCACATTC</pcr_primer_p2>
		<pcr_amplicon_size>911</pcr_amplicon_size>
		<canonical_amplicon>GTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGT</canonical_amplicon>
		<polymorphic_amplicon>GYAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37861</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>320502</contig_pos>
        <strand></strand>
        <context>ccggtcatgc[G/A]cctttaaaga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGC</left_flank>
        <right_flank>CCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGAGGTATTCTTCATAAATCGGCAGATAAATAAAAAACTAGAAATTTTCAAAAATTTTTGTGAATGTAAAGTTTTTAGGTTAGTTCTGTTTTATAACCTACAAAAATGATCGGTCACTTGACGGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAACACTCTTGTCCGGTGCTTATGAACCTTATGGCCGAAAATTTCTTTAAAGGCGCATAGCAAGTTATGAAAAGGAAGCGGCTACAATTTAGTCAGGTAAATTTGTGCGCCTTACTACAGTAACTAGGAATTATTTTATTTTGGCCTATTTTAGGCAGTTTTCCTATTTAATAAGAAAATTCAGCTGATTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGTGGATGGTAACTGGGTGAAAGATGGTATTGTCATCAATGAGGTTGAGTGCCAAATCATTACCTAGACGGAATTTTAAGCCTCCAAAATGCTCAATATCACGGACACTAGGGATTGATGATAAGAAACCATTAACATTTATAATAATAATTAATCAAATTTTCATAATACTGATATTAATAATAACCATTCCTATAATAATAATATTAATTAATAAGCATTACTAACCCTAATGAATATTTCTTTGGTAATTTTTGAACTCCATTTCTCCTTTTTTCCAAGAAGTTGACTATACTTCATCATTACCTTTGTTTTCTCTGCTGGTTTCTTA</canonical>
            <polymorphic>GGGAGGTATTCTTCATAAATCGGCAGATAAATAAAAAACTAGAAATTTTCAAAAATTTTTGTGAATGTAAAGTTTTTAGGTTAGTTCTGTTTTATAACCTACAAAAATGATCGGTCACTTGACGGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAACACTCTTGTCCGGTGCTTATGAACCTTATGGCCGAAAATTTCTTTAAAGGCGCATAGCAAGTTATGAAAAGGAAGCGGCTACAATTTAGTCAGGTAAATTTGTGCGCCTTACTACAGTAACTAGGAATTATTTTATTTTGGCCTATTTTAGGCAGTTTTCCTATTTAATAAGAAAATTCAGCTGATTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCRCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGTGGATGGTAACTGGGTGAAAGATGGTATTGTCATCAATGAGGTTGAGTGCCAAATCATTACCTAGACGGAATTTTAAGCCTCCAAAATGCTCAATATCACGGACACTAGGGATTGATGATAAGAAACCATTAACATTTATAATAATAATTAATCAAATTTTCATAATACTGATATTAATAATAACCATTCCTATAATAATAATATTAATTAATAAGCATTACTAACCCTAATGAATATTTCTTTGGTAATTTTTGAACTCCATTTCTCCTTTTTTCCAAGAAGTTGACTATACTTCATCATTACCTTTGTTTTCTCTGCTGGTTTCTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 229 217 54</canonical_bands>
                <polymorphic_bands>729 217 54</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATATCTGAAATAGAAAACGAGAT</pcr_primer_p1>
		<pcr_primer_p2>ACACAATTCATCACCACATTC</pcr_primer_p2>
		<pcr_amplicon_size>911</pcr_amplicon_size>
		<canonical_amplicon>CGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGT</canonical_amplicon>
		<polymorphic_amplicon>CRCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37862</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>320516</contig_pos>
        <strand></strand>
        <context>ttaaagaaaa[A/T]tttggtcaga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAA</left_flank>
        <right_flank>TTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAAATCGGCAGATAAATAAAAAACTAGAAATTTTCAAAAATTTTTGTGAATGTAAAGTTTTTAGGTTAGTTCTGTTTTATAACCTACAAAAATGATCGGTCACTTGACGGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAACACTCTTGTCCGGTGCTTATGAACCTTATGGCCGAAAATTTCTTTAAAGGCGCATAGCAAGTTATGAAAAGGAAGCGGCTACAATTTAGTCAGGTAAATTTGTGCGCCTTACTACAGTAACTAGGAATTATTTTATTTTGGCCTATTTTAGGCAGTTTTCCTATTTAATAAGAAAATTCAGCTGATTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGTGGATGGTAACTGGGTGAAAGATGGTATTGTCATCAATGAGGTTGAGTGCCAAATCATTACCTAGACGGAATTTTAAGCCTCCAAAATGCTCAATATCACGGACACTAGGGATTGATGATAAGAAACCATTAACATTTATAATAATAATTAATCAAATTTTCATAATACTGATATTAATAATAACCATTCCTATAATAATAATATTAATTAATAAGCATTACTAACCCTAATGAATATTTCTTTGGTAATTTTTGAACTCCATTTCTCCTTTTTTCCAAGAAGTTGACTATACTTCATCATTACCTTTGTTTTCTCTGCTGGTTTCTTATTTTCTCTATGTAT</canonical>
            <polymorphic>ATAAATCGGCAGATAAATAAAAAACTAGAAATTTTCAAAAATTTTTGTGAATGTAAAGTTTTTAGGTTAGTTCTGTTTTATAACCTACAAAAATGATCGGTCACTTGACGGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAACACTCTTGTCCGGTGCTTATGAACCTTATGGCCGAAAATTTCTTTAAAGGCGCATAGCAAGTTATGAAAAGGAAGCGGCTACAATTTAGTCAGGTAAATTTGTGCGCCTTACTACAGTAACTAGGAATTATTTTATTTTGGCCTATTTTAGGCAGTTTTCCTATTTAATAAGAAAATTCAGCTGATTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAWTTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGTGGATGGTAACTGGGTGAAAGATGGTATTGTCATCAATGAGGTTGAGTGCCAAATCATTACCTAGACGGAATTTTAAGCCTCCAAAATGCTCAATATCACGGACACTAGGGATTGATGATAAGAAACCATTAACATTTATAATAATAATTAATCAAATTTTCATAATACTGATATTAATAATAACCATTCCTATAATAATAATATTAATTAATAAGCATTACTAACCCTAATGAATATTTCTTTGGTAATTTTTGAACTCCATTTCTCCTTTTTTCCAAGAAGTTGACTATACTTCATCATTACCTTTGTTTTCTCTGCTGGTTTCTTATTTTCTCTATGTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>188 162 148 142 86 78 66 60 31 29 10</canonical_bands>
                <polymorphic_bands>208 188 162 148 86 78 60 31 29 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>148 96 92 86 77 76 66 51 50 49 46 41 31 29 29 14 10 9</canonical_bands>
                <polymorphic_bands>158 148 96 86 77 76 51 50 49 46 41 31 29 29 14 10 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATATCTGAAATAGAAAACGAGAT</pcr_primer_p1>
		<pcr_primer_p2>ACACAATTCATCACCACATTC</pcr_primer_p2>
		<pcr_amplicon_size>911</pcr_amplicon_size>
		<canonical_amplicon>AATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGT</canonical_amplicon>
		<polymorphic_amplicon>AWTTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37863</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>320564</contig_pos>
        <strand>+</strand>
        <context>TATCCTGTAC[G/T]TTTTTTMGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTAC</left_flank>
        <right_flank>TTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATGTAAAGTTTTTAGGTTAGTTCTGTTTTATAACCTACAAAAATGATCGGTCACTTGACGGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAACACTCTTGTCCGGTGCTTATGAACCTTATGGCCGAAAATTTCTTTAAAGGCGCATAGCAAGTTATGAAAAGGAAGCGGCTACAATTTAGTCAGGTAAATTTGTGCGCCTTACTACAGTAACTAGGAATTATTTTATTTTGGCCTATTTTAGGCAGTTTTCCTATTTAATAAGAAAATTCAGCTGATTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGTGGATGGTAACTGGGTGAAAGATGGTATTGTCATCAATGAGGTTGAGTGCCAAATCATTACCTAGACGGAATTTTAAGCCTCCAAAATGCTCAATATCACGGACACTAGGGATTGATGATAAGAAACCATTAACATTTATAATAATAATTAATCAAATTTTCATAATACTGATATTAATAATAACCATTCCTATAATAATAATATTAATTAATAAGCATTACTAACCCTAATGAATATTTCTTTGGTAATTTTTGAACTCCATTTCTCCTTTTTTCCAAGAAGTTGACTATACTTCATCATTACCTTTGTTTTCTCTGCTGGTTTCTTATTTTCTCTATGTATTGGTTGGTTGGTGTCCTAGTACCATTTGAGTTTCAGCATGCATCCACT</canonical>
            <polymorphic>GAATGTAAAGTTTTTAGGTTAGTTCTGTTTTATAACCTACAAAAATGATCGGTCACTTGACGGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAACACTCTTGTCCGGTGCTTATGAACCTTATGGCCGAAAATTTCTTTAAAGGCGCATAGCAAGTTATGAAAAGGAAGCGGCTACAATTTAGTCAGGTAAATTTGTGCGCCTTACTACAGTAACTAGGAATTATTTTATTTTGGCCTATTTTAGGCAGTTTTCCTATTTAATAAGAAAATTCAGCTGATTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACKTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGTGGATGGTAACTGGGTGAAAGATGGTATTGTCATCAATGAGGTTGAGTGCCAAATCATTACCTAGACGGAATTTTAAGCCTCCAAAATGCTCAATATCACGGACACTAGGGATTGATGATAAGAAACCATTAACATTTATAATAATAATTAATCAAATTTTCATAATACTGATATTAATAATAACCATTCCTATAATAATAATATTAATTAATAAGCATTACTAACCCTAATGAATATTTCTTTGGTAATTTTTGAACTCCATTTCTCCTTTTTTCCAAGAAGTTGACTATACTTCATCATTACCTTTGTTTTCTCTGCTGGTTTCTTATTTTCTCTATGTATTGGTTGGTTGGTGTCCTAGTACCATTTGAGTTTCAGCATGCATCCACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>471 367 128 34</canonical_bands>
                <polymorphic_bands>471 367 162</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATATCTGAAATAGAAAACGAGAT</pcr_primer_p1>
		<pcr_primer_p2>ACACAATTCATCACCACATTC</pcr_primer_p2>
		<pcr_amplicon_size>911</pcr_amplicon_size>
		<canonical_amplicon>CTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGT</canonical_amplicon>
		<polymorphic_amplicon>CKTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37864</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>320571</contig_pos>
        <strand>+</strand>
        <context>TACKTTTTTT[A/C]GAAAAAATAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTT</left_flank>
        <right_flank>GAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTTTTAGGTTAGTTCTGTTTTATAACCTACAAAAATGATCGGTCACTTGACGGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAACACTCTTGTCCGGTGCTTATGAACCTTATGGCCGAAAATTTCTTTAAAGGCGCATAGCAAGTTATGAAAAGGAAGCGGCTACAATTTAGTCAGGTAAATTTGTGCGCCTTACTACAGTAACTAGGAATTATTTTATTTTGGCCTATTTTAGGCAGTTTTCCTATTTAATAAGAAAATTCAGCTGATTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGTGGATGGTAACTGGGTGAAAGATGGTATTGTCATCAATGAGGTTGAGTGCCAAATCATTACCTAGACGGAATTTTAAGCCTCCAAAATGCTCAATATCACGGACACTAGGGATTGATGATAAGAAACCATTAACATTTATAATAATAATTAATCAAATTTTCATAATACTGATATTAATAATAACCATTCCTATAATAATAATATTAATTAATAAGCATTACTAACCCTAATGAATATTTCTTTGGTAATTTTTGAACTCCATTTCTCCTTTTTTCCAAGAAGTTGACTATACTTCATCATTACCTTTGTTTTCTCTGCTGGTTTCTTATTTTCTCTATGTATTGGTTGGTTGGTGTCCTAGTACCATTTGAGTTTCAGCATGCATCCACTTTTCACG</canonical>
            <polymorphic>AAGTTTTTAGGTTAGTTCTGTTTTATAACCTACAAAAATGATCGGTCACTTGACGGCCGAGCTCTTACATTCTACTGAAAACAAGCTTTTGTATAACACTCTTGTCCGGTGCTTATGAACCTTATGGCCGAAAATTTCTTTAAAGGCGCATAGCAAGTTATGAAAAGGAAGCGGCTACAATTTAGTCAGGTAAATTTGTGCGCCTTACTACAGTAACTAGGAATTATTTTATTTTGGCCTATTTTAGGCAGTTTTCCTATTTAATAAGAAAATTCAGCTGATTATTTATGAGAATCTGAAGAATTTTAACGAAAAAATCAAGAATCTTAGGAAAGTAGGCAAATATGAAATAATTCCGAAGTACTGTATTAAAGACGCATGAAGTTGTTTGTAAAAATCGTAGATGTTTCCTATGCAGGACCGGTCATGCGCCTTTAAAGAAAAATTTGGTCAGAAGGTTCATCGACGCCAGACAAGAATAATATCCTGTACTTTTTTTMGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGTGGATGGTAACTGGGTGAAAGATGGTATTGTCATCAATGAGGTTGAGTGCCAAATCATTACCTAGACGGAATTTTAAGCCTCCAAAATGCTCAATATCACGGACACTAGGGATTGATGATAAGAAACCATTAACATTTATAATAATAATTAATCAAATTTTCATAATACTGATATTAATAATAACCATTCCTATAATAATAATATTAATTAATAAGCATTACTAACCCTAATGAATATTTCTTTGGTAATTTTTGAACTCCATTTCTCCTTTTTTCCAAGAAGTTGACTATACTTCATCATTACCTTTGTTTTCTCTGCTGGTTTCTTATTTTCTCTATGTATTGGTTGGTTGGTGTCCTAGTACCATTTGAGTTTCAGCATGCATCCACTTTTCACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATATCTGAAATAGAAAACGAGAT</pcr_primer_p1>
		<pcr_primer_p2>ACACAATTCATCACCACATTC</pcr_primer_p2>
		<pcr_amplicon_size>911</pcr_amplicon_size>
		<canonical_amplicon>TTGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGT</canonical_amplicon>
		<polymorphic_amplicon>TMGAAAAAATAAATTTCATTTTTAGTACTACTCTGACAACGAGAATCCAAGAGATGTGGGAACTGAAAATGGAGTTGGAACGGCGAATGTGGTGATGAATTGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37865</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>372000</contig_pos>
        <strand>+</strand>
        <context>TTTTCTGCAA[C/T]TCACAAACAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCATATTACTGCCAACTTCTTTCAAAAACAATAATTCAATTTTCTGCAA</left_flank>
        <right_flank>TCACAAACATTCTCTCACCTGATATCAATCGATTAATAAATTTCCTAGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACCGTTCTCCTTGAATAGAGCCGACAGTTTTTGCTGAAAGTATTATCTTAATGAAGAACAGATTTTTACTAGAACTATTTTTAGGGAAGAAGCCTCGGCAGGAGTCTCAATGAATGGAAGAAAACGCCACTATACACAGTCCCGCGATTATTTCTCAATTACTGCAAAACGTCCATGCACAAGTCAGAAAATGGAGCAAGAAGAGGAGGACGACGACTTTGAAGATGCTCTTGAATGAATCGCTAGTGGATATGATATTTTTTAGATCTTGAGCTTGTTTTTCGCCTTTTTCCCCTGTTTCGTAGTTTGAGCCTTTTTTGTCGCCTTCTCTGTAATCTTAGATATCACCAGTTTTGTAGTTTCTCAATGATTTTTTGGAGCTTTATTAATTAATATACCGCAGTTAATTTCCGATGTGTTTTCTATCCCTTTTTCCAGAACTTTTTTTTCCATATTACTGCCAACTTCTTTCAAAAACAATAATTCAATTTTCTGCAACTCACAAACATTCTCTCACCTGATATCAATCGATTAATAAATTTCCTAGCACTGTTTCTTCATTTTGAAAAATTAAGCATCACAATTTAGAAGCTGAGATCATAAATGCTTGCATATCACAACCGTTAGTTAGTTATCATCCTATAAATGAGGGAATACATCTAATCTATCAATTTGCTGCACAGAATATTCAAAAGTAGTTGATTATGTTCATCAAGTGATTCTCGTTTCGATTGCATCTTTTCTCGAACCGCTTTCAACTCGACAGTCCATTTCTTCGATGTTGCTGCTGTTTCGACAATCTGAAATTCAAAAGTGTTTTATCATTTTTATACTAAACACATGAAGTTGCGTCGCTTTCACTTTTTATCTCTCTGTCAATTAACACGATTTTCGAAAAGCATGAAAATTCATTATTAATTGACGTGGACCTGACCATAAGTTGATTCGCGCGGAAGGCGCACCATCCAGCTGTTTGAAGCGCCAGAGGAGCGGTAAATT</canonical>
            <polymorphic>GACCGTTCTCCTTGAATAGAGCCGACAGTTTTTGCTGAAAGTATTATCTTAATGAAGAACAGATTTTTACTAGAACTATTTTTAGGGAAGAAGCCTCGGCAGGAGTCTCAATGAATGGAAGAAAACGCCACTATACACAGTCCCGCGATTATTTCTCAATTACTGCAAAACGTCCATGCACAAGTCAGAAAATGGAGCAAGAAGAGGAGGACGACGACTTTGAAGATGCTCTTGAATGAATCGCTAGTGGATATGATATTTTTTAGATCTTGAGCTTGTTTTTCGCCTTTTTCCCCTGTTTCGTAGTTTGAGCCTTTTTTGTCGCCTTCTCTGTAATCTTAGATATCACCAGTTTTGTAGTTTCTCAATGATTTTTTGGAGCTTTATTAATTAATATACCGCAGTTAATTTCCGATGTGTTTTCTATCCCTTTTTCCAGAACTTTTTTTTCCATATTACTGCCAACTTCTTTCAAAAACAATAATTCAATTTTCTGCAAYTCACAAACATTCTCTCACCTGATATCAATCGATTAATAAATTTCCTAGCACTGTTTCTTCATTTTGAAAAATTAAGCATCACAATTTAGAAGCTGAGATCATAAATGCTTGCATATCACAACCGTTAGTTAGTTATCATCCTATAAATGAGGGAATACATCTAATCTATCAATTTGCTGCACAGAATATTCAAAAGTAGTTGATTATGTTCATCAAGTGATTCTCGTTTCGATTGCATCTTTTCTCGAACCGCTTTCAACTCGACAGTCCATTTCTTCGATGTTGCTGCTGTTTCGACAATCTGAAATTCAAAAGTGTTTTATCATTTTTATACTAAACACATGAAGTTGCGTCGCTTTCACTTTTTATCTCTCTGTCAATTAACACGATTTTCGAAAAGCATGAAAATTCATTATTAATTGACGTGGACCTGACCATAAGTTGATTCGCGCGGAAGGCGCACCATCCAGCTGTTTGAAGCGCCAGAGGAGCGGTAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCACCAGTTTTGTAGTTTCTCA</pcr_primer_p1>
		<pcr_primer_p2>GCTTCTAAATTGTGATGCTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCACCAGTTTTGTAGTTTCTCAATGATTTTTTGGAGCTTTATTAATTAATATACCGCAGTTAATTTCCGATGTGTTTTCTATCCCTTTTTCCAGAACTTTTTTTTCCATATTACTGCCAACTTCTTTCAAAAACAATAATTCAATTTTCTGCAACTCACAAACATTCTCTCACCTGATATCAATCGATTAATAAATTTCCTAGCACTGTTTCTTCATTTTGAAAAATTAAGCATCACAATTTAGAAGC</canonical_amplicon>
		<polymorphic_amplicon>ATCACCAGTTTTGTAGTTTCTCAATGATTTTTTGGAGCTTTATTAATTAATATACCGCAGTTAATTTCCGATGTGTTTTCTATCCCTTTTTCCAGAACTTTTTTTTCCATATTACTGCCAACTTCTTTCAAAAACAATAATTCAATTTTCTGCAAYTCACAAACATTCTCTCACCTGATATCAATCGATTAATAAATTTCCTAGCACTGTTTCTTCATTTTGAAAAATTAAGCATCACAATTTAGAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37866</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>442234</contig_pos>
        <strand>+</strand>
        <context>GAGACGTAAW[A/T]TTTTTTTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTACGAGAAAGAGTATTACAGATTGAATGCGGTCATCAATGAGACGTAAT</left_flank>
        <right_flank>TTTTTTTGAAAAATTTTCAAAATAACTTTCTAGATCTTTCAGCCGTCTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGCAATTCGACACTAATGATAATGGTGTGAAATGGAAGGAGCACACTCTACGTCATGAAGAGTTTTTGACTTTTGAAGGTCCTAAAAAACGAGAGGCACTGGAGAAAATCTTCGAGAACTACAACCTTTTGGTAATTTGATCTGCTTCACGCGTTTGGAAAAAAGCGAAAAATTTTGAGAAATTTCAGGTGATCACAAGATTTTACAAAAGTCTCAAAAAATCTGTGGAGCATTTGGAGGACTTGCATGTGCCAGTTTCCAGCCACAACCATTACTATCATGGAATTTTTGATGAAATCGTGGACATTCACATTTCTCAAATTAGATCGGAGTCAAAGTATAATGAAGAACAGAAGAATTACCTGATCGACAGAGTGAAAAAAGTGAAAATCATTTTTCCGTACTTGGAGTACAATAATATCACGGTCTGGAGGCAAGCCAAGACTGCTTACGAGAAAGAGTATTACAGATTGAATGCGGTCATCAATGAGACGTAATTTTTTTTTGAAAAATTTTCAAAATAACTTTCTAGATCTTTCAGCCGTCTCCACCCCGATGTGGTCGACAAAATGATCCGAGTGTTGGCTGTAAACCAGGCAATGGAAATTTTCGAAAAATACATCACCACGTTTACACCGCGATTCGTCTTCCAACATGTGGTTTCAGCGGCCACGCGGCACTCATTCAACTACCAGGATGAAATTCATCTTTCAATTTTTACAGTATTCAACCCAAAAACGAATCCGAATGCTGTGGTAAGTGCATGGAGATTGAAAATGTGATATTATTGATTTTTTCAGTACGATCGAATCTTGTATGTTATGTGCCATGAGTTGTTACATGTGCATTATAATGTCGATCCGCCACCATTCGAGACAGAAATTTGGGATCGGGAGAAGCAGTGTATTCATGATAGGCTGGATTATTATGCAAATGCGTATAAGGTGATAAAGTTCCACTTTCAAAAACCAATTTTTCAAAAAGTTAGTATCGCAAATT</canonical>
            <polymorphic>GTGCAATTCGACACTAATGATAATGGTGTGAAATGGAAGGAGCACACTCTACGTCATGAAGAGTTTTTGACTTTTGAAGGTCCTAAAAAACGAGAGGCACTGGAGAAAATCTTCGAGAACTACAACCTTTTGGTAATTTGATCTGCTTCACGCGTTTGGAAAAAAGCGAAAAATTTTGAGAAATTTCAGGTGATCACAAGATTTTACAAAAGTCTCAAAAAATCTGTGGAGCATTTGGAGGACTTGCATGTGCCAGTTTCCAGCCACAACCATTACTATCATGGAATTTTTGATGAAATCGTGGACATTCACATTTCTCAAATTAGATCGGAGTCAAAGTATAATGAAGAACAGAAGAATTACCTGATCGACAGAGTGAAAAAAGTGAAAATCATTTTTCCGTACTTGGAGTACAATAATATCACGGTCTGGAGGCAAGCCAAGACTGCTTACGAGAAAGAGTATTACAGATTGAATGCGGTCATCAATGAGACGTAATWTTTTTTTGAAAAATTTTCAAAATAACTTTCTAGATCTTTCAGCCGTCTCCACCCCGATGTGGTCGACAAAATGATCCGAGTGTTGGCTGTAAACCAGGCAATGGAAATTTTCGAAAAATACATCACCACGTTTACACCGCGATTCGTCTTCCAACATGTGGTTTCAGCGGCCACGCGGCACTCATTCAACTACCAGGATGAAATTCATCTTTCAATTTTTACAGTATTCAACCCAAAAACGAATCCGAATGCTGTGGTAAGTGCATGGAGATTGAAAATGTGATATTATTGATTTTTTCAGTACGATCGAATCTTGTATGTTATGTGCCATGAGTTGTTACATGTGCATTATAATGTCGATCCGCCACCATTCGAGACAGAAATTTGGGATCGGGAGAAGCAGTGTATTCATGATAGGCTGGATTATTATGCAAATGCGTATAAGGTGATAAAGTTCCACTTTCAAAAACCAATTTTTCAAAAAGTTAGTATCGCAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>168 139 130 103 96 94 90 37 37 36 25 15 12 10 4 4</canonical_bands>
                <polymorphic_bands>168 154 130 103 96 94 90 37 37 36 25 12 10 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCCGTACTTGGAGTACAAT</pcr_primer_p1>
		<pcr_primer_p2>GTGTAAACGTGGTGATGTATTTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTTCCGTACTTGGAGTACAATAATATCACGGTCTGGAGGCAAGCCAAGACTGCTTACGAGAAAGAGTATTACAGATTGAATGCGGTCATCAATGAGACGTAATTTTTTTTTGAAAAATTTTCAAAATAACTTTCTAGATCTTTCAGCCGTCTCCACCCCGATGTGGTCGACAAAATGATCCGAGTGTTGGCTGTAAACCAGGCAATGGAAATTTTCGAAAAATACATCACCACGTTTACAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCCGTACTTGGAGTACAATAATATCACGGTCTGGAGGCAAGCCAAGACTGCTTACGAGAAAGAGTATTACAGATTGAATGCGGTCATCAATGAGACGTAATWTTTTTTTGAAAAATTTTCAAAATAACTTTCTAGATCTTTCAGCCGTCTCCACCCCGATGTGGTCGACAAAATGATCCGAGTGTTGGCTGTAAACCAGGCAATGGAAATTTTCGAAAAATACATCACCACGTTTACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37867</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>442719</contig_pos>
        <strand>+</strand>
        <context>TTTTCAAAAA[A/G]TTAGTATCGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGCGTATAAGGTGATAAAGTTCCACTTTCAAAAACCAATTTTTCAAAAA</left_flank>
        <right_flank>TTAGTATCGCAAATTGGGAAATGCTAGAATATTATTGCAAAATTATTATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATGAGACGTAATTTTTTTTTGAAAAATTTTCAAAATAACTTTCTAGATCTTTCAGCCGTCTCCACCCCGATGTGGTCGACAAAATGATCCGAGTGTTGGCTGTAAACCAGGCAATGGAAATTTTCGAAAAATACATCACCACGTTTACACCGCGATTCGTCTTCCAACATGTGGTTTCAGCGGCCACGCGGCACTCATTCAACTACCAGGATGAAATTCATCTTTCAATTTTTACAGTATTCAACCCAAAAACGAATCCGAATGCTGTGGTAAGTGCATGGAGATTGAAAATGTGATATTATTGATTTTTTCAGTACGATCGAATCTTGTATGTTATGTGCCATGAGTTGTTACATGTGCATTATAATGTCGATCCGCCACCATTCGAGACAGAAATTTGGGATCGGGAGAAGCAGTGTATTCATGATAGGCTGGATTATTATGCAAATGCGTATAAGGTGATAAAGTTCCACTTTCAAAAACCAATTTTTCAAAAAGTTAGTATCGCAAATTGGGAAATGCTAGAATATTATTGCAAAATTATTATTATTGGTTTTAAAACCTCCAGTGCAATAAGAAAAAAATGGAAGTTTTTTAACAGAACGAATCCGACTGGAGTCTTGCCCAATTTTCCTATGAAGACAGTGCAAATGTTTCTGGCTTGCGTTTGATGCTCCTCTATCTTGCCCAGATGACTTCTGACAGCAATCAGGTTATTCTTCCCAATTTTTAAATGGTACCCAGCATCTTTTTCCAGATTCGTGAGAATATTGAAAACGTTGTCACCCGATTCTGCCACAAGACGCAACGAAAAGCTGCTGCACATAATCCTCTCGACGTCTCCCTGAATGTCGCCGTGTCACAGATGCCCACATTCAACAGTCTCTACAACTGTACCCCCGGAGATCGAATGTACGTCGCTCGTGACAAATACTGCAAAGCGTTGAACATGGACATTGATGTGAACGACTACCTCACACAGAAGGTTGAGAAGGACG</canonical>
            <polymorphic>CAATGAGACGTAATTTTTTTTTGAAAAATTTTCAAAATAACTTTCTAGATCTTTCAGCCGTCTCCACCCCGATGTGGTCGACAAAATGATCCGAGTGTTGGCTGTAAACCAGGCAATGGAAATTTTCGAAAAATACATCACCACGTTTACACCGCGATTCGTCTTCCAACATGTGGTTTCAGCGGCCACGCGGCACTCATTCAACTACCAGGATGAAATTCATCTTTCAATTTTTACAGTATTCAACCCAAAAACGAATCCGAATGCTGTGGTAAGTGCATGGAGATTGAAAATGTGATATTATTGATTTTTTCAGTACGATCGAATCTTGTATGTTATGTGCCATGAGTTGTTACATGTGCATTATAATGTCGATCCGCCACCATTCGAGACAGAAATTTGGGATCGGGAGAAGCAGTGTATTCATGATAGGCTGGATTATTATGCAAATGCGTATAAGGTGATAAAGTTCCACTTTCAAAAACCAATTTTTCAAAAARTTAGTATCGCAAATTGGGAAATGCTAGAATATTATTGCAAAATTATTATTATTGGTTTTAAAACCTCCAGTGCAATAAGAAAAAAATGGAAGTTTTTTAACAGAACGAATCCGACTGGAGTCTTGCCCAATTTTCCTATGAAGACAGTGCAAATGTTTCTGGCTTGCGTTTGATGCTCCTCTATCTTGCCCAGATGACTTCTGACAGCAATCAGGTTATTCTTCCCAATTTTTAAATGGTACCCAGCATCTTTTTCCAGATTCGTGAGAATATTGAAAACGTTGTCACCCGATTCTGCCACAAGACGCAACGAAAAGCTGCTGCACATAATCCTCTCGACGTCTCCCTGAATGTCGCCGTGTCACAGATGCCCACATTCAACAGTCTCTACAACTGTACCCCCGGAGATCGAATGTACGTCGCTCGTGACAAATACTGCAAAGCGTTGAACATGGACATTGATGTGAACGACTACCTCACACAGAAGGTTGAGAAGGACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGCAGTGTATTCATGATAGG</pcr_primer_p1>
		<pcr_primer_p2>AAACATTTGCACTGTCTTCATAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGAAGCAGTGTATTCATGATAGGCTGGATTATTATGCAAATGCGTATAAGGTGATAAAGTTCCACTTTCAAAAACCAATTTTTCAAAAAGTTAGTATCGCAAATTGGGAAATGCTAGAATATTATTGCAAAATTATTATTATTGGTTTTAAAACCTCCAGTGCAATAAGAAAAAAATGGAAGTTTTTTAACAGAACGAATCCGACTGGAGTCTTGCCCAATTTTCCTATGAAGACAGTGCAAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>AGAAGCAGTGTATTCATGATAGGCTGGATTATTATGCAAATGCGTATAAGGTGATAAAGTTCCACTTTCAAAAACCAATTTTTCAAAAARTTAGTATCGCAAATTGGGAAATGCTAGAATATTATTGCAAAATTATTATTATTGGTTTTAAAACCTCCAGTGCAATAAGAAAAAAATGGAAGTTTTTTAACAGAACGAATCCGACTGGAGTCTTGCCCAATTTTCCTATGAAGACAGTGCAAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37868</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>467237</contig_pos>
        <strand>+</strand>
        <context>TCAAATTCAA[A/T]AATACTCAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGGATGTCCGGTTGGGCTTCTTTCAAAGAAAATTTGGTAGTCAAATTCAA</left_flank>
        <right_flank>AATACTCAGAATCGGCATTTCCAAATTCGCATTTTTTTTCTGACAGCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATAAAACACGGAGGCAGATGTTTTTCCAGAGACGGATAGAGATAGAGAGAGCTTTTGAATGAAACAACATGCCCGTAAATCAGGCACAGAGGTAAAACAGGATCCAGATGAAATATTTCTAGACAGAAATTGGACCTGGTTTCATATAAGGGAAGAATAGAGTAGTTTTGAAAACGTAGACACAAGAAAAAATCGTTGTGTACTTGGAAATTAAAGTTTTAAACCAGCAAATTTCAACATATGAAAAATCAGAAAAATACAAAATACCGTATTTCTAATACAAGCCCACACAAACTGTCAACTTTGGGCTCAATAATCTCGATTCCTGTAAAAGATGTCAAAAATTTGTCAACTGATAAAATATTGGTAATATTATGATAAATAATTTATCAGCTTGCAAAATTTTGATAGCTTTCATAGAAATCGAGATAATTGAGCTTAAAGTTGGATGTCCGGTTGGGCTTCTTTCAAAGAAAATTTGGTAGTCAAATTCAATAATACTCAGAATCGGCATTTCCAAATTCGCATTTTTTTTCTGACAGCAAATTCAGTAAGTTTTCAAGTGTTCAAATTTCGCAGAACCAAGCTATTAAAGGGGGACTCCGGTCAAATTTTTTATTGCATTAGATTGTGTTAAAAGTTATCTATTTTCCGAATATTATTGCGAAAAAATTCAAAAAAAATCCGAAATCCCTGAAAAACGCCATTGAAAAGGGAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGCGAGCGGCGCGACTTTCTTAACGGACAATTTTTCCGGATTTTTTTCGCTTTTATCTCCGACAAAAAACGTTGAAAAACACTTTCGGCCACTNNNNNNNNNNGGGAATTCAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTTTCATTTTCAACGGCGTTTTTCAGGGAATTTCGGATTTCTTTTGAATTTTTCGCAATAATACTAGGAAAAG</canonical>
            <polymorphic>AAAAATAAAACACGGAGGCAGATGTTTTTCCAGAGACGGATAGAGATAGAGAGAGCTTTTGAATGAAACAACATGCCCGTAAATCAGGCACAGAGGTAAAACAGGATCCAGATGAAATATTTCTAGACAGAAATTGGACCTGGTTTCATATAAGGGAAGAATAGAGTAGTTTTGAAAACGTAGACACAAGAAAAAATCGTTGTGTACTTGGAAATTAAAGTTTTAAACCAGCAAATTTCAACATATGAAAAATCAGAAAAATACAAAATACCGTATTTCTAATACAAGCCCACACAAACTGTCAACTTTGGGCTCAATAATCTCGATTCCTGTAAAAGATGTCAAAAATTTGTCAACTGATAAAATATTGGTAATATTATGATAAATAATTTATCAGCTTGCAAAATTTTGATAGCTTTCATAGAAATCGAGATAATTGAGCTTAAAGTTGGATGTCCGGTTGGGCTTCTTTCAAAGAAAATTTGGTAGTCAAATTCAAWAATACTCAGAATCGGCATTTCCAAATTCGCATTTTTTTTCTGACAGCAAATTCAGTAAGTTTTCAAGTGTTCAAATTTCGCAGAACCAAGCTATTAAAGGGGGACTCCGGTCAAATTTTTTATTGCATTAGATTGTGTTAAAAGTTATCTATTTTCCGAATATTATTGCGAAAAAATTCAAAAAAAATCCGAAATCCCTGAAAAACGCCATTGAAAAGGGAAAAAATTCAAAAAAAGGTGCCGCCGAGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACGCGAGCGGCGCGACTTTCTTAACGGACAATTTTTCCGGATTTTTTTCGCTTTTATCTCCGACAAAAAACGTTGAAAAACACTTTCGGCCACTNNNNNNNNNNGGGAATTCAAATCCTCGTCCCTCGGCGGCACCTTTTTTGAATTTTTTTCATTTTCAACGGCGTTTTTCAGGGAATTTCGGATTTCTTTTGAATTTTTCGCAATAATACTAGGAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATATGAAAAATCAGAAAAATACAA</pcr_primer_p1>
		<pcr_primer_p2>AACTTACTGAATTTGCTGTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>CATATGAAAAATCAGAAAAATACAAAATACCGTATTTCTAATACAAGCCCACACAAACTGTCAACTTTGGGCTCAATAATCTCGATTCCTGTAAAAGATGTCAAAAATTTGTCAACTGATAAAATATTGGTAATATTATGATAAATAATTTATCAGCTTGCAAAATTTTGATAGCTTTCATAGAAATCGAGATAATTGAGCTTAAAGTTGGATGTCCGGTTGGGCTTCTTTCAAAGAAAATTTGGTAGTCAAATTCAATAATACTCAGAATCGGCATTTCCAAATTCGCATTTTTTTTCTGACAGCAAATTCAGTAAGTT</canonical_amplicon>
		<polymorphic_amplicon>CATATGAAAAATCAGAAAAATACAAAATACCGTATTTCTAATACAAGCCCACACAAACTGTCAACTTTGGGCTCAATAATCTCGATTCCTGTAAAAGATGTCAAAAATTTGTCAACTGATAAAATATTGGTAATATTATGATAAATAATTTATCAGCTTGCAAAATTTTGATAGCTTTCATAGAAATCGAGATAATTGAGCTTAAAGTTGGATGTCCGGTTGGGCTTCTTTCAAAGAAAATTTGGTAGTCAAATTCAAWAATACTCAGAATCGGCATTTCCAAATTCGCATTTTTTTTCTGACAGCAAATTCAGTAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37869</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>502697</contig_pos>
        <strand>+</strand>
        <context>GTTGGGAAAT[C/T]GAACATCCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAAACAATGTCACCGTCCCGAAGACCACATTGTGGAAGGGTTGGGAAAT</left_flank>
        <right_flank>GAACATCCTTCCCTTCTTCAGCAGTTCTCCAACGGTGGCATCTGCAAGAC</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGAGGTCAGTATTAGTAATTCGGGTTGGATTCTATAAAAGGAAATACAGTACATTGCTCCAGTAAATTGGTGAAACTGCGATAGAAAGCCTGTTAAACACCGTGTGGTCCAAGGGGTCCAAAATGTGTGTTCCACACTTTCCTGCCTCATTTTGTCCGACTTGCATGAGCAAGTTCGTTAACTCTCTGTAAATGCATGCCGCTGAAGATGCTCCAGAAAATTTTAGCAACACGCTGAGACAATGAGTTCCATGAATGGTAATGGTTAATACGCTGATGTCCTATTTTGTTTGATTTCACCTCTCAGGGAACCAACTCATAATGAGTTCCCTATTCTAGGACTAGTAGTTCTCGAAAACTGACCTCTTGATGCATCCTGGGATCACTATCCTGATTGACTCCATTGAATCGAAGGTTTAAAATGATTTCTGGATACTTCAAACTGTGCCAAACAATGTCACCGTCCCGAAGACCACATTGTGGAAGGGTTGGGAAATCGAACATCCTTCCCTTCTTCAGCAGTTCTCCAACGGTGGCATCTGCAAGACATACGTTTAGATTTATCAGTTTTTGCTAATCTATATCAACTCACTTGTAGAAACTCTTTGTGAGGTCATTGCAATTACAGTTTCCTTGTTCTTCTCCATAGCATGCAGTAGTTTATCTCCTTCTAAACGGAAAAGGAACAGCGACGGGATTTCGATATCGTCCTTTCCATCTTTGTCAGATGCCATTGAGAAGGGTGGTCGACCGGATGCAAACTTCGTGTTCTCTTCGGTATCTGTAACATTTCACATTACGAAAAATAATTCTGAAGGTTCCCTACCAATGACAATCATGCCAATTGCTCCTGCTTGCTGCACACGTCGCGCCTTTTCTTGGAACACACATCCCGATCGCTCTACAATTGCCACTTTTCCAATCATTTCATCTTTGTTCACAATTTCATCGCAAGCTCGGTAAGGAATTGAAATTACTACTGGACCGTAAACAGGTCG</canonical>
            <polymorphic>AATTGAGGTCAGTATTAGTAATTCGGGTTGGATTCTATAAAAGGAAATACAGTACATTGCTCCAGTAAATTGGTGAAACTGCGATAGAAAGCCTGTTAAACACCGTGTGGTCCAAGGGGTCCAAAATGTGTGTTCCACACTTTCCTGCCTCATTTTGTCCGACTTGCATGAGCAAGTTCGTTAACTCTCTGTAAATGCATGCCGCTGAAGATGCTCCAGAAAATTTTAGCAACACGCTGAGACAATGAGTTCCATGAATGGTAATGGTTAATACGCTGATGTCCTATTTTGTTTGATTTCACCTCTCAGGGAACCAACTCATAATGAGTTCCCTATTCTAGGACTAGTAGTTCTCGAAAACTGACCTCTTGATGCATCCTGGGATCACTATCCTGATTGACTCCATTGAATCGAAGGTTTAAAATGATTTCTGGATACTTCAAACTGTGCCAAACAATGTCACCGTCCCGAAGACCACATTGTGGAAGGGTTGGGAAATYGAACATCCTTCCCTTCTTCAGCAGTTCTCCAACGGTGGCATCTGCAAGACATACGTTTAGATTTATCAGTTTTTGCTAATCTATATCAACTCACTTGTAGAAACTCTTTGTGAGGTCATTGCAATTACAGTTTCCTTGTTCTTCTCCATAGCATGCAGTAGTTTATCTCCTTCTAAACGGAAAAGGAACAGCGACGGGATTTCGATATCGTCCTTTCCATCTTTGTCAGATGCCATTGAGAAGGGTGGTCGACCGGATGCAAACTTCGTGTTCTCTTCGGTATCTGTAACATTTCACATTACGAAAAATAATTCTGAAGGTTCCCTACCAATGACAATCATGCCAATTGCTCCTGCTTGCTGCACACGTCGCGCCTTTTCTTGGAACACACATCCCGATCGCTCTACAATTGCCACTTTTCCAATCATTTCATCTTTGTTCACAATTTCATCGCAAGCTCGGTAAGGAATTGAAATTACTACTGGACCGTAAACAGGTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>355 250 203 88 57 47</canonical_bands>
                <polymorphic_bands>355 291 250 57 47</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTGAATCGAAGGTTTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTATGGAGAAGAACAAGGAAACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CATTGAATCGAAGGTTTAAAATGATTTCTGGATACTTCAAACTGTGCCAAACAATGTCACCGTCCCGAAGACCACATTGTGGAAGGGTTGGGAAATCGAACATCCTTCCCTTCTTCAGCAGTTCTCCAACGGTGGCATCTGCAAGACATACGTTTAGATTTATCAGTTTTTGCTAATCTATATCAACTCACTTGTAGAAACTCTTTGTGAGGTCATTGCAATTACAGTTTCCTTGTTCTTCTCCATAG</canonical_amplicon>
		<polymorphic_amplicon>CATTGAATCGAAGGTTTAAAATGATTTCTGGATACTTCAAACTGTGCCAAACAATGTCACCGTCCCGAAGACCACATTGTGGAAGGGTTGGGAAATYGAACATCCTTCCCTTCTTCAGCAGTTCTCCAACGGTGGCATCTGCAAGACATACGTTTAGATTTATCAGTTTTTGCTAATCTATATCAACTCACTTGTAGAAACTCTTTGTGAGGTCATTGCAATTACAGTTTCCTTGTTCTTCTCCATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37870</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>509729</contig_pos>
        <strand>+</strand>
        <context>CAAATGCCAG[A/C]TGATTGTGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAACGGGTTCAGTGTATGCTTTTGTGTACAACGTGTATAACAAATGCCAG</left_flank>
        <right_flank>TGATTGTGCATTCGTTCCGCCTCATATTGTACTTCCGCTTCTCGGTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATTTTAAGTTTCTATACAATTCGCTTTTCAAATCTAGTTTGAATGTTCAACTCCAGAAGTCATTATATTCTGCAAAATTCTGCAATGTATGTCAATTCACAAACTTTGATAATCCCTACCAATCTACAATTAGATTTGGATAATCCTAAACTTTGCACTTTTTGAATCACCAATCAGGCCAAAGCTGCTCACTGGCCATGCCAGAAGATCAAGAAGACTTTCCCTAATCGTAGAGTCTTTTATCAATCGTAAATTGAAATTTCTCACTGAAATGATTGAACAAATTTTTTGCCTTTTTATCTTATCTCTATTTCTCACTCATATACCGTCCATTGCCCCAAACCAAAAAAGAGATAGCCACGTTGCTTGTGTCCAATTGGACTCTGACCTCTCTCCCTCTCATTAGCACAGCAAAATTTGGGTTTGTAGGTAGCCCCTCCGGGGGGCTAACGGGTTCAGTGTATGCTTTTGTGTACAACGTGTATAACAAATGCCAGCTGATTGTGCATTCGTTCCGCCTCATATTGTACTTCCGCTTCTCGGTTTTCGCGGTCTCTTGCGTACAAAATTTGATGCCTAATAAGAAAAGTATGCGATGTTAGAACCCATGATACATCACTTTCTCATTTCTGTTTCCGTGCGAATTTCTTTTTCTTTTTTTGCAATTTGCAGCGACAACTTCCGATTGACCACTTCTCTTGTTCACTTCTCCTTCTTAGTTTTTCAAAACTATTGATTTTCCAGATGGCGGATCGTAATACAATTGGTGACAGTGCAGCTGCATTGATTGGCAACACACCAATGGTGTATTTGAACAAACTTGCCAGAGGATGTGCTGCGAAAATTGGTAAGGGATTTTTTAGAACAATTTTTGTTGCGATTACCGTGTTTTCTCTATTAAAAGCCCACCCAAAGCGTCAACTTTAAGCTCACTAATCTTTATTGTTGTGAAGTATATAAAAAATGTGTCAACTGTCAATTTATTTATCATTATATCA</canonical>
            <polymorphic>TAATTTTAAGTTTCTATACAATTCGCTTTTCAAATCTAGTTTGAATGTTCAACTCCAGAAGTCATTATATTCTGCAAAATTCTGCAATGTATGTCAATTCACAAACTTTGATAATCCCTACCAATCTACAATTAGATTTGGATAATCCTAAACTTTGCACTTTTTGAATCACCAATCAGGCCAAAGCTGCTCACTGGCCATGCCAGAAGATCAAGAAGACTTTCCCTAATCGTAGAGTCTTTTATCAATCGTAAATTGAAATTTCTCACTGAAATGATTGAACAAATTTTTTGCCTTTTTATCTTATCTCTATTTCTCACTCATATACCGTCCATTGCCCCAAACCAAAAAAGAGATAGCCACGTTGCTTGTGTCCAATTGGACTCTGACCTCTCTCCCTCTCATTAGCACAGCAAAATTTGGGTTTGTAGGTAGCCCCTCCGGGGGGCTAACGGGTTCAGTGTATGCTTTTGTGTACAACGTGTATAACAAATGCCAGMTGATTGTGCATTCGTTCCGCCTCATATTGTACTTCCGCTTCTCGGTTTTCGCGGTCTCTTGCGTACAAAATTTGATGCCTAATAAGAAAAGTATGCGATGTTAGAACCCATGATACATCACTTTCTCATTTCTGTTTCCGTGCGAATTTCTTTTTCTTTTTTTGCAATTTGCAGCGACAACTTCCGATTGACCACTTCTCTTGTTCACTTCTCCTTCTTAGTTTTTCAAAACTATTGATTTTCCAGATGGCGGATCGTAATACAATTGGTGACAGTGCAGCTGCATTGATTGGCAACACACCAATGGTGTATTTGAACAAACTTGCCAGAGGATGTGCTGCGAAAATTGGTAAGGGATTTTTTAGAACAATTTTTGTTGCGATTACCGTGTTTTCTCTATTAAAAGCCCACCCAAAGCGTCAACTTTAAGCTCACTAATCTTTATTGTTGTGAAGTATATAAAAAATGTGTCAACTGTCAATTTATTTATCATTATATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>313 281 186 150 70</canonical_bands>
                <polymorphic_bands>594 186 150 70</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>495 319 186</canonical_bands>
                <polymorphic_bands>814 186</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>281 180 162 126 76 70 51 24 13 11 6</canonical_bands>
                <polymorphic_bands>332 180 162 126 76 70 24 13 11 6</polymorphic_bands>
            </assay>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>499 281 220</canonical_bands>
                <polymorphic_bands>780 220</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>499 281 220</canonical_bands>
                <polymorphic_bands>780 220</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGGACTCTGACCTCTCTC</pcr_primer_p1>
		<pcr_primer_p2>AAAGTGATGTATCATGGGTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AATTGGACTCTGACCTCTCTCCCTCTCATTAGCACAGCAAAATTTGGGTTTGTAGGTAGCCCCTCCGGGGGGCTAACGGGTTCAGTGTATGCTTTTGTGTACAACGTGTATAACAAATGCCAGCTGATTGTGCATTCGTTCCGCCTCATATTGTACTTCCGCTTCTCGGTTTTCGCGGTCTCTTGCGTACAAAATTTGATGCCTAATAAGAAAAGTATGCGATGTTAGAACCCATGATACATCACTTT</canonical_amplicon>
		<polymorphic_amplicon>AATTGGACTCTGACCTCTCTCCCTCTCATTAGCACAGCAAAATTTGGGTTTGTAGGTAGCCCCTCCGGGGGGCTAACGGGTTCAGTGTATGCTTTTGTGTACAACGTGTATAACAAATGCCAGMTGATTGTGCATTCGTTCCGCCTCATATTGTACTTCCGCTTCTCGGTTTTCGCGGTCTCTTGCGTACAAAATTTGATGCCTAATAAGAAAAGTATGCGATGTTAGAACCCATGATACATCACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37871</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>546735</contig_pos>
        <strand></strand>
        <context>GAATTACGag[G/A]acccactcat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CACTTGTCAGTCATGTGGAATTTGCAGCAAAGTGAGTTTTGAATTACGAG</left_flank>
        <right_flank>ACCCACTCATGCCGTAAACTTTGAGCTCAATTATCCTGATTCCTGTGAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAACATTTCTGTGGAGTGCTCAATCTGAATCGCATCGAATGGATCCCTCAAAATGAACTTCTCGCCGATTCGCGCGTTGACGCTTTCATTACCCATGGTGGACTGGCCAGTGTCACTGAATTGGCAATGATGGGCAAACCTGCCGTCGTGGTCTGTAAACCGGAAGTTGTTGTGACCTACAGTAACCAATAATTCAGATTCCAATCTTCGCCGACCAAGGCAGGAATGCAGAAATGTTGAAACGTCATGGCGGAGTTGAAATTTTACAGAAGACAGATTTGAGTAATGCAAAACTTTTGGCAAGGACTTTGAGAAAAGTTATGGAAAATAAAAAGTGATTTTGGGTACAAGGTTAGGGGTCTGAAATGTGTTTGTGCTTTTAGATACCGCCAGAATGCGGAGAAATTGGCTGAACAGATGAACAACATGCCCACAGATCCCAAGAAGACACTTGTCAGTCATGTGGAATTTGCAGCAAAGTGAGTTTTGAATTACGAGGACCCACTCATGCCGTAAACTTTGAGCTCAATTATCCTGATTCCTGTGAAAGACATCAAAAAGTTGTCAAATTGATAGAATGTCAAATTGACATATCATCATGAATAATTCATCAGTTGACAAATTTTAGATATCTTTCACAGGAACTGAGAGAATTGAGCTTAAATTTAAAGGTTTGGTAGAAATTCTAAACTGTGCAATTTTTTTAAATCTTGTAGAATATTAAATTCAATTAAATTAGCAATGTCATCTTAAAATTTTTGTCTCACAAAACTGACCTTGTGCCTTATACACAAGCCAGATATCTGTTTCTAGTGTAATTCGAAAATTTCAACAAAAAATCTAAACTTTTAAATTTTAGATTCGGTAAACTTCCACACATGGACCCATACGGTAGACATCAGAACTTTTTCGAGTACTACCTATTGGATATCATCTCTATTGCTACTGTTGTCATCTTGACCATCACATACACTTTTGTCAAAATCTGTTTCTGCATGT</canonical>
            <polymorphic>GAAACATTTCTGTGGAGTGCTCAATCTGAATCGCATCGAATGGATCCCTCAAAATGAACTTCTCGCCGATTCGCGCGTTGACGCTTTCATTACCCATGGTGGACTGGCCAGTGTCACTGAATTGGCAATGATGGGCAAACCTGCCGTCGTGGTCTGTAAACCGGAAGTTGTTGTGACCTACAGTAACCAATAATTCAGATTCCAATCTTCGCCGACCAAGGCAGGAATGCAGAAATGTTGAAACGTCATGGCGGAGTTGAAATTTTACAGAAGACAGATTTGAGTAATGCAAAACTTTTGGCAAGGACTTTGAGAAAAGTTATGGAAAATAAAAAGTGATTTTGGGTACAAGGTTAGGGGTCTGAAATGTGTTTGTGCTTTTAGATACCGCCAGAATGCGGAGAAATTGGCTGAACAGATGAACAACATGCCCACAGATCCCAAGAAGACACTTGTCAGTCATGTGGAATTTGCAGCAAAGTGAGTTTTGAATTACGAGRACCCACTCATGCCGTAAACTTTGAGCTCAATTATCCTGATTCCTGTGAAAGACATCAAAAAGTTGTCAAATTGATAGAATGTCAAATTGACATATCATCATGAATAATTCATCAGTTGACAAATTTTAGATATCTTTCACAGGAACTGAGAGAATTGAGCTTAAATTTAAAGGTTTGGTAGAAATTCTAAACTGTGCAATTTTTTTAAATCTTGTAGAATATTAAATTCAATTAAATTAGCAATGTCATCTTAAAATTTTTGTCTCACAAAACTGACCTTGTGCCTTATACACAAGCCAGATATCTGTTTCTAGTGTAATTCGAAAATTTCAACAAAAAATCTAAACTTTTAAATTTTAGATTCGGTAAACTTCCACACATGGACCCATACGGTAGACATCAGAACTTTTTCGAGTACTACCTATTGGATATCATCTCTATTGCTACTGTTGTCATCTTGACCATCACATACACTTTTGTCAAAATCTGTTTCTGCATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>499 383 118</canonical_bands>
                <polymorphic_bands>882 118</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>499 383 118</canonical_bands>
                <polymorphic_bands>882 118</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>457 383 116 44</canonical_bands>
                <polymorphic_bands>840 116 44</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACACTTGTCAGTCATGTGGA</pcr_primer_p1>
		<pcr_primer_p2>AAAATTTTAAGATGACATTGCTAA</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>ACACTTGTCAGTCATGTGGAATTTGCAGCAAAGTGAGTTTTGAATTACGAGGACCCACTCATGCCGTAAACTTTGAGCTCAATTATCCTGATTCCTGTGAAAGACATCAAAAAGTTGTCAAATTGATAGAATGTCAAATTGACATATCATCATGAATAATTCATCAGTTGACAAATTTTAGATATCTTTCACAGGAACTGAGAGAATTGAGCTTAAATTTAAAGGTTTGGTAGAAATTCTAAACTGTGCAATTTTTTTAAATCTTGTAGAATATTAAATTCAATTAAATTAGCAATGTCATCTTAAAATTTT</canonical_amplicon>
		<polymorphic_amplicon>ACACTTGTCAGTCATGTGGAATTTGCAGCAAAGTGAGTTTTGAATTACGAGRACCCACTCATGCCGTAAACTTTGAGCTCAATTATCCTGATTCCTGTGAAAGACATCAAAAAGTTGTCAAATTGATAGAATGTCAAATTGACATATCATCATGAATAATTCATCAGTTGACAAATTTTAGATATCTTTCACAGGAACTGAGAGAATTGAGCTTAAATTTAAAGGTTTGGTAGAAATTCTAAACTGTGCAATTTTTTTAAATCTTGTAGAATATTAAATTCAATTAAATTAGCAATGTCATCTTAAAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37872</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>546779</contig_pos>
        <strand></strand>
        <context>tcctgattcc[T/C]gtgaaagaca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TACGAGGACCCACTCATGCCGTAAACTTTGAGCTCAATTATCCTGATTCC</left_flank>
        <right_flank>GTGAAAGACATCAAAAAGTTGTCAAATTGATAGAATGTCAAATTGACATA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCCTCAAAATGAACTTCTCGCCGATTCGCGCGTTGACGCTTTCATTACCCATGGTGGACTGGCCAGTGTCACTGAATTGGCAATGATGGGCAAACCTGCCGTCGTGGTCTGTAAACCGGAAGTTGTTGTGACCTACAGTAACCAATAATTCAGATTCCAATCTTCGCCGACCAAGGCAGGAATGCAGAAATGTTGAAACGTCATGGCGGAGTTGAAATTTTACAGAAGACAGATTTGAGTAATGCAAAACTTTTGGCAAGGACTTTGAGAAAAGTTATGGAAAATAAAAAGTGATTTTGGGTACAAGGTTAGGGGTCTGAAATGTGTTTGTGCTTTTAGATACCGCCAGAATGCGGAGAAATTGGCTGAACAGATGAACAACATGCCCACAGATCCCAAGAAGACACTTGTCAGTCATGTGGAATTTGCAGCAAAGTGAGTTTTGAATTACGAGGACCCACTCATGCCGTAAACTTTGAGCTCAATTATCCTGATTCCTGTGAAAGACATCAAAAAGTTGTCAAATTGATAGAATGTCAAATTGACATATCATCATGAATAATTCATCAGTTGACAAATTTTAGATATCTTTCACAGGAACTGAGAGAATTGAGCTTAAATTTAAAGGTTTGGTAGAAATTCTAAACTGTGCAATTTTTTTAAATCTTGTAGAATATTAAATTCAATTAAATTAGCAATGTCATCTTAAAATTTTTGTCTCACAAAACTGACCTTGTGCCTTATACACAAGCCAGATATCTGTTTCTAGTGTAATTCGAAAATTTCAACAAAAAATCTAAACTTTTAAATTTTAGATTCGGTAAACTTCCACACATGGACCCATACGGTAGACATCAGAACTTTTTCGAGTACTACCTATTGGATATCATCTCTATTGCTACTGTTGTCATCTTGACCATCACATACACTTTTGTCAAAATCTGTTTCTGCATGTTTAGAAGGTGTTGTGGCAGTCGGAAGGTGAAATTTGAGTGAACT</canonical>
            <polymorphic>TCCCTCAAAATGAACTTCTCGCCGATTCGCGCGTTGACGCTTTCATTACCCATGGTGGACTGGCCAGTGTCACTGAATTGGCAATGATGGGCAAACCTGCCGTCGTGGTCTGTAAACCGGAAGTTGTTGTGACCTACAGTAACCAATAATTCAGATTCCAATCTTCGCCGACCAAGGCAGGAATGCAGAAATGTTGAAACGTCATGGCGGAGTTGAAATTTTACAGAAGACAGATTTGAGTAATGCAAAACTTTTGGCAAGGACTTTGAGAAAAGTTATGGAAAATAAAAAGTGATTTTGGGTACAAGGTTAGGGGTCTGAAATGTGTTTGTGCTTTTAGATACCGCCAGAATGCGGAGAAATTGGCTGAACAGATGAACAACATGCCCACAGATCCCAAGAAGACACTTGTCAGTCATGTGGAATTTGCAGCAAAGTGAGTTTTGAATTACGAGGACCCACTCATGCCGTAAACTTTGAGCTCAATTATCCTGATTCCYGTGAAAGACATCAAAAAGTTGTCAAATTGATAGAATGTCAAATTGACATATCATCATGAATAATTCATCAGTTGACAAATTTTAGATATCTTTCACAGGAACTGAGAGAATTGAGCTTAAATTTAAAGGTTTGGTAGAAATTCTAAACTGTGCAATTTTTTTAAATCTTGTAGAATATTAAATTCAATTAAATTAGCAATGTCATCTTAAAATTTTTGTCTCACAAAACTGACCTTGTGCCTTATACACAAGCCAGATATCTGTTTCTAGTGTAATTCGAAAATTTCAACAAAAAATCTAAACTTTTAAATTTTAGATTCGGTAAACTTCCACACATGGACCCATACGGTAGACATCAGAACTTTTTCGAGTACTACCTATTGGATATCATCTCTATTGCTACTGTTGTCATCTTGACCATCACATACACTTTTGTCAAAATCTGTTTCTGCATGTTTAGAAGGTGTTGTGGCAGTCGGAAGGTGAAATTTGAGTGAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCAAAGTGAGTTTTGAATTAC</pcr_primer_p1>
		<pcr_primer_p2>TGAGACAAAAATTTTAAGATGACA</pcr_primer_p2>
		<pcr_amplicon_size>294</pcr_amplicon_size>
		<canonical_amplicon>CAGCAAAGTGAGTTTTGAATTACGAGGACCCACTCATGCCGTAAACTTTGAGCTCAATTATCCTGATTCCTGTGAAAGACATCAAAAAGTTGTCAAATTGATAGAATGTCAAATTGACATATCATCATGAATAATTCATCAGTTGACAAATTTTAGATATCTTTCACAGGAACTGAGAGAATTGAGCTTAAATTTAAAGGTTTGGTAGAAATTCTAAACTGTGCAATTTTTTTAAATCTTGTAGAATATTAAATTCAATTAAATTAGCAATGTCATCTTAAAATTTTTGTCTCA</canonical_amplicon>
		<polymorphic_amplicon>CAGCAAAGTGAGTTTTGAATTACGAGGACCCACTCATGCCGTAAACTTTGAGCTCAATTATCCTGATTCCYGTGAAAGACATCAAAAAGTTGTCAAATTGATAGAATGTCAAATTGACATATCATCATGAATAATTCATCAGTTGACAAATTTTAGATATCTTTCACAGGAACTGAGAGAATTGAGCTTAAATTTAAAGGTTTGGTAGAAATTCTAAACTGTGCAATTTTTTTAAATCTTGTAGAATATTAAATTCAATTAAATTAGCAATGTCATCTTAAAATTTTTGTCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37873</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>550167</contig_pos>
        <strand></strand>
        <context>ATGATCCAGT[A/T]TGATTAAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCTTGATGAGTGATTTGAGATAGTATTTGTGACGTCGCAATGATCCAGT</left_flank>
        <right_flank>TGATTAAATATTTCGAAAATTGGAACCTCCATGATAATTTCATTGGAAAC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTGCCTTTATGAAGTTTCGAGGAGCGTTTTTAAGTTTCACTGAAGCTGAATCTGAAAACAAAAGCTTACTTGTAAAATATTGCAGAGCGATAACTCACAAATCGTAGCACTCCATGAAATCCAGAATTTCTTTTTTAACCAAATCCGGGAAACGGATGAAGGCAACTGGCATTTTTGTTCTTTAATTTAATTTTATTTATTTATTTGAACGAAGGGAAGAAAACCCTAGGAGATATAACAATGACATACATTTGTAGTAAATGGTAGATGGAAAACCGAGTTAGTAAATAGTTTAATTCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACCAGGGCTTCACCGGAAACACTTCGGCGGGTAAAGAGAGTCCAACATCTGATTACTCTATTAGAGAGAAATTGAGAAGATATTTTTGTTGAGTTCTTGATGAGTGATTTGAGATAGTATTTGTGACGTCGCAATGATCCAGTATGATTAAATATTTCGAAAATTGGAACCTCCATGATAATTTCATTGGAAACAATAATTTTATACGTGTAGACCAAATCATTATAGAGCCTGCGATACTCCAAGGAACTTAGCTGACATTCTTCCAGTGCTTCAAAGTATGAAGTGTATGCCATCCTGAATGTTTTGTTCTGTAAAAAAATCAAATTATCTAGAGTTAAGTATACATCGAAGGCTTCCGTAGAACGTTGTACCAAATACTGAATTCAAGATCATGATATTGGAAAGAGAAACGTTTAGATTTTTTGAAAATGTAACTCTCAAATAATGGATGATAAAATGTATTGAGGAGGGATGTATTCAAAGTATTCAATGAAATTAAGGTGAGTTAAAAAATCAGCTGAAAGAATCAGAAAATCAAGAGAAAGTTGTAAAAGAATCCCTATTTGAGTAGCACCTAACATATTGCCAATAGACACCGAATAGGTCATCTGAAATGAGAGTCGACACCATTCTCCGTGTGT</canonical>
            <polymorphic>TGTTGCCTTTATGAAGTTTCGAGGAGCGTTTTTAAGTTTCACTGAAGCTGAATCTGAAAACAAAAGCTTACTTGTAAAATATTGCAGAGCGATAACTCACAAATCGTAGCACTCCATGAAATCCAGAATTTCTTTTTTAACCAAATCCGGGAAACGGATGAAGGCAACTGGCATTTTTGTTCTTTAATTTAATTTTATTTATTTATTTGAACGAAGGGAAGAAAACCCTAGGAGATATAACAATGACATACATTTGTAGTAAATGGTAGATGGAAAACCGAGTTAGTAAATAGTTTAATTCAAGACAAGAAAATGTTTTAGATCACAGGATAATAGTCGATTTTTGAAAGCCGCTGACCAGGGCTTCACCGGAAACACTTCGGCGGGTAAAGAGAGTCCAACATCTGATTACTCTATTAGAGAGAAATTGAGAAGATATTTTTGTTGAGTTCTTGATGAGTGATTTGAGATAGTATTTGTGACGTCGCAATGATCCAGTWTGATTAAATATTTCGAAAATTGGAACCTCCATGATAATTTCATTGGAAACAATAATTTTATACGTGTAGACCAAATCATTATAGAGCCTGCGATACTCCAAGGAACTTAGCTGACATTCTTCCAGTGCTTCAAAGTATGAAGTGTATGCCATCCTGAATGTTTTGTTCTGTAAAAAAATCAAATTATCTAGAGTTAAGTATACATCGAAGGCTTCCGTAGAACGTTGTACCAAATACTGAATTCAAGATCATGATATTGGAAAGAGAAACGTTTAGATTTTTTGAAAATGTAACTCTCAAATAATGGATGATAAAATGTATTGAGGAGGGATGTATTCAAAGTATTCAATGAAATTAAGGTGAGTTAAAAAATCAGCTGAAAGAATCAGAAAATCAAGAGAAAGTTGTAAAAGAATCCCTATTTGAGTAGCACCTAACATATTGCCAATAGACACCGAATAGGTCATCTGAAATGAGAGTCGACACCATTCTCCGTGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAGAGTCCAACATCTGATTA</pcr_primer_p1>
		<pcr_primer_p2>ATACTTTGAAGCACTGGAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAGAGAGTCCAACATCTGATTACTCTATTAGAGAGAAATTGAGAAGATATTTTTGTTGAGTTCTTGATGAGTGATTTGAGATAGTATTTGTGACGTCGCAATGATCCAGTATGATTAAATATTTCGAAAATTGGAACCTCCATGATAATTTCATTGGAAACAATAATTTTATACGTGTAGACCAAATCATTATAGAGCCTGCGATACTCCAAGGAACTTAGCTGACATTCTTCCAGTGCTTCAAAGTAT</canonical_amplicon>
		<polymorphic_amplicon>AAAGAGAGTCCAACATCTGATTACTCTATTAGAGAGAAATTGAGAAGATATTTTTGTTGAGTTCTTGATGAGTGATTTGAGATAGTATTTGTGACGTCGCAATGATCCAGTWTGATTAAATATTTCGAAAATTGGAACCTCCATGATAATTTCATTGGAAACAATAATTTTATACGTGTAGACCAAATCATTATAGAGCCTGCGATACTCCAAGGAACTTAGCTGACATTCTTCCAGTGCTTCAAAGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37874</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>552510</contig_pos>
        <strand>+</strand>
        <context>TACCAATTTG[A/T]TAATAGACAC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTATTCTAATCTGGCATCCCAATGTTACTATTAGAGTAGTACCAATTTG</left_flank>
        <right_flank>TAATAGACACCAAGTAGGCCATTTAGAATGAGAGAAGACATCATTCTCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAGAACAAAACTCACAAATCGTAGCACTCCAGAAGGTCTAAAATTTTTTCTTGAACCAGTTCCGGAAAACGGATGAAGTCGATTGGCATTTTAGTCTGTAAAAGAAACAAATAGATGAAAATTATGTTCATTGAAACTGTTCATTGAAACTGTAAATGAAAGCAGAGAGACATGTAAATGGTTCGTAGAAAAAATATCTTTTTGCATTGACGCAATTGTTCGTGGTGGTGTTTACAGAAATTTTGTCATCATGGGTTAGACGGCATTTTGCGTGTGTAGGAAAAACGGGAGAGACGGATGAGTCACTAGCACAATTCTATGTTTTGTTTTTCAAAAAAAAAAAACAATATGTGCTAAAATAGTAAATTTCGAGCATTCTTCTTGTATTGCGCTCCCAGGCAGATAACAGACAGAGAGATAGTCACTCATCAGCTACAAACCAATCTCGATTATTCTAATCTGGCATCCCAATGTTACTATTAGAGTAGTACCAATTTGCTAATAGACACCAAGTAGGCCATTTAGAATGAGAGAAGACATCATTCTCCGTGTGTTATTGTTTATGACAGCTGTGGATTGATACAGTATGACTAAGGAATGTCTAACGGCAATGACAACTGTAATGGTATCAAATACCGAGATAAAGGTTTAGAATTTTTTAAAAACATAAATCTCAAGAAAATAAATAAAAACGTGTATTGAAGTTAGATATATTCAGTCTAATGCAACAAAATAAAGGGAATATCCACAAATTCGGAAATCGGGAGAATTTTTAAAAAATTTGGTTAAAAACTCGGAAAGGAAAAAGGAATTTAAAAAGTAAGGTCAAAAAAATCAGGGACAACCGTCAAATTGCCAAAACTATGTTTACATTAAATGAGGAGGCGGAGTATAAATGTAAAAGCAATTCGAGTACAAAAACCAAAACCCCAATAAAACGGGTGAAGTCGATTATGAAAATTATGTCGATTCAAACGGAAAATGAAAATAGAGAGACAT</canonical>
            <polymorphic>GCAGAACAAAACTCACAAATCGTAGCACTCCAGAAGGTCTAAAATTTTTTCTTGAACCAGTTCCGGAAAACGGATGAAGTCGATTGGCATTTTAGTCTGTAAAAGAAACAAATAGATGAAAATTATGTTCATTGAAACTGTTCATTGAAACTGTAAATGAAAGCAGAGAGACATGTAAATGGTTCGTAGAAAAAATATCTTTTTGCATTGACGCAATTGTTCGTGGTGGTGTTTACAGAAATTTTGTCATCATGGGTTAGACGGCATTTTGCGTGTGTAGGAAAAACGGGAGAGACGGATGAGTCACTAGCACAATTCTATGTTTTGTTTTTCAAAAAAAAAAAACAATATGTGCTAAAATAGTAAATTTCGAGCATTCTTCTTGTATTGCGCTCCCAGGCAGATAACAGACAGAGAGATAGTCACTCATCAGCTACAAACCAATCTCGATTATTCTAATCTGGCATCCCAATGTTACTATTAGAGTAGTACCAATTTGWTAATAGACACCAAGTAGGCCATTTAGAATGAGAGAAGACATCATTCTCCGTGTGTTATTGTTTATGACAGCTGTGGATTGATACAGTATGACTAAGGAATGTCTAACGGCAATGACAACTGTAATGGTATCAAATACCGAGATAAAGGTTTAGAATTTTTTAAAAACATAAATCTCAAGAAAATAAATAAAAACGTGTATTGAAGTTAGATATATTCAGTCTAATGCAACAAAATAAAGGGAATATCCACAAATTCGGAAATCGGGAGAATTTTTAAAAAATTTGGTTAAAAACTCGGAAAGGAAAAAGGAATTTAAAAAGTAAGGTCAAAAAAATCAGGGACAACCGTCAAATTGCCAAAACTATGTTTACATTAAATGAGGAGGCGGAGTATAAATGTAAAAGCAATTCGAGTACAAAAACCAAAACCCCAATAAAACGGGTGAAGTCGATTATGAAAATTATGTCGATTCAAACGGAAAATGAAAATAGAGAGACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTAAATTTCGAGCATTCTTCTT</pcr_primer_p1>
		<pcr_primer_p2>CCGTTAGACATTCCTTAGTCATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGTAAATTTCGAGCATTCTTCTTGTATTGCGCTCCCAGGCAGATAACAGACAGAGAGATAGTCACTCATCAGCTACAAACCAATCTCGATTATTCTAATCTGGCATCCCAATGTTACTATTAGAGTAGTACCAATTTGCTAATAGACACCAAGTAGGCCATTTAGAATGAGAGAAGACATCATTCTCCGTGTGTTATTGTTTATGACAGCTGTGGATTGATACAGTATGACTAAGGAATGTCTAACGG</canonical_amplicon>
		<polymorphic_amplicon>AGTAAATTTCGAGCATTCTTCTTGTATTGCGCTCCCAGGCAGATAACAGACAGAGAGATAGTCACTCATCAGCTACAAACCAATCTCGATTATTCTAATCTGGCATCCCAATGTTACTATTAGAGTAGTACCAATTTGWTAATAGACACCAAGTAGGCCATTTAGAATGAGAGAAGACATCATTCTCCGTGTGTTATTGTTTATGACAGCTGTGGATTGATACAGTATGACTAAGGAATGTCTAACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37875</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>552527</contig_pos>
        <strand></strand>
        <context>ACACCAAGTA[G/A]GCCATTTAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCCCAATGTTACTATTAGAGTAGTACCAATTTGCTAATAGACACCAAGTA</left_flank>
        <right_flank>GCCATTTAGAATGAGAGAAGACATCATTCTCCGTGTGTTATTGTTTATGA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCGTAGCACTCCAGAAGGTCTAAAATTTTTTCTTGAACCAGTTCCGGAAAACGGATGAAGTCGATTGGCATTTTAGTCTGTAAAAGAAACAAATAGATGAAAATTATGTTCATTGAAACTGTTCATTGAAACTGTAAATGAAAGCAGAGAGACATGTAAATGGTTCGTAGAAAAAATATCTTTTTGCATTGACGCAATTGTTCGTGGTGGTGTTTACAGAAATTTTGTCATCATGGGTTAGACGGCATTTTGCGTGTGTAGGAAAAACGGGAGAGACGGATGAGTCACTAGCACAATTCTATGTTTTGTTTTTCAAAAAAAAAAAACAATATGTGCTAAAATAGTAAATTTCGAGCATTCTTCTTGTATTGCGCTCCCAGGCAGATAACAGACAGAGAGATAGTCACTCATCAGCTACAAACCAATCTCGATTATTCTAATCTGGCATCCCAATGTTACTATTAGAGTAGTACCAATTTGCTAATAGACACCAAGTAGGCCATTTAGAATGAGAGAAGACATCATTCTCCGTGTGTTATTGTTTATGACAGCTGTGGATTGATACAGTATGACTAAGGAATGTCTAACGGCAATGACAACTGTAATGGTATCAAATACCGAGATAAAGGTTTAGAATTTTTTAAAAACATAAATCTCAAGAAAATAAATAAAAACGTGTATTGAAGTTAGATATATTCAGTCTAATGCAACAAAATAAAGGGAATATCCACAAATTCGGAAATCGGGAGAATTTTTAAAAAATTTGGTTAAAAACTCGGAAAGGAAAAAGGAATTTAAAAAGTAAGGTCAAAAAAATCAGGGACAACCGTCAAATTGCCAAAACTATGTTTACATTAAATGAGGAGGCGGAGTATAAATGTAAAAGCAATTCGAGTACAAAAACCAAAACCCCAATAAAACGGGTGAAGTCGATTATGAAAATTATGTCGATTCAAACGGAAAATGAAAATAGAGAGACATCTAAATGGTTCGTAGAA</canonical>
            <polymorphic>AATCGTAGCACTCCAGAAGGTCTAAAATTTTTTCTTGAACCAGTTCCGGAAAACGGATGAAGTCGATTGGCATTTTAGTCTGTAAAAGAAACAAATAGATGAAAATTATGTTCATTGAAACTGTTCATTGAAACTGTAAATGAAAGCAGAGAGACATGTAAATGGTTCGTAGAAAAAATATCTTTTTGCATTGACGCAATTGTTCGTGGTGGTGTTTACAGAAATTTTGTCATCATGGGTTAGACGGCATTTTGCGTGTGTAGGAAAAACGGGAGAGACGGATGAGTCACTAGCACAATTCTATGTTTTGTTTTTCAAAAAAAAAAAACAATATGTGCTAAAATAGTAAATTTCGAGCATTCTTCTTGTATTGCGCTCCCAGGCAGATAACAGACAGAGAGATAGTCACTCATCAGCTACAAACCAATCTCGATTATTCTAATCTGGCATCCCAATGTTACTATTAGAGTAGTACCAATTTGCTAATAGACACCAAGTARGCCATTTAGAATGAGAGAAGACATCATTCTCCGTGTGTTATTGTTTATGACAGCTGTGGATTGATACAGTATGACTAAGGAATGTCTAACGGCAATGACAACTGTAATGGTATCAAATACCGAGATAAAGGTTTAGAATTTTTTAAAAACATAAATCTCAAGAAAATAAATAAAAACGTGTATTGAAGTTAGATATATTCAGTCTAATGCAACAAAATAAAGGGAATATCCACAAATTCGGAAATCGGGAGAATTTTTAAAAAATTTGGTTAAAAACTCGGAAAGGAAAAAGGAATTTAAAAAGTAAGGTCAAAAAAATCAGGGACAACCGTCAAATTGCCAAAACTATGTTTACATTAAATGAGGAGGCGGAGTATAAATGTAAAAGCAATTCGAGTACAAAAACCAAAACCCCAATAAAACGGGTGAAGTCGATTATGAAAATTATGTCGATTCAAACGGAAAATGAAAATAGAGAGACATCTAAATGGTTCGTAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>447 416 85 52</canonical_bands>
                <polymorphic_bands>447 416 137</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTAAATTTCGAGCATTCTTCTT</pcr_primer_p1>
		<pcr_primer_p2>CCGTTAGACATTCCTTAGTCATA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGTAAATTTCGAGCATTCTTCTTGTATTGCGCTCCCAGGCAGATAACAGACAGAGAGATAGTCACTCATCAGCTACAAACCAATCTCGATTATTCTAATCTGGCATCCCAATGTTACTATTAGAGTAGTACCAATTTGCTAATAGACACCAAGTAGGCCATTTAGAATGAGAGAAGACATCATTCTCCGTGTGTTATTGTTTATGACAGCTGTGGATTGATACAGTATGACTAAGGAATGTCTAACGG</canonical_amplicon>
		<polymorphic_amplicon>AGTAAATTTCGAGCATTCTTCTTGTATTGCGCTCCCAGGCAGATAACAGACAGAGAGATAGTCACTCATCAGCTACAAACCAATCTCGATTATTCTAATCTGGCATCCCAATGTTACTATTAGAGTAGTACCAATTTGCTAATAGACACCAAGTARGCCATTTAGAATGAGAGAAGACATCATTCTCCGTGTGTTATTGTTTATGACAGCTGTGGATTGATACAGTATGACTAAGGAATGTCTAACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37876</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>559223</contig_pos>
        <strand>+</strand>
        <context>CTTGTTCTGT[C/G]AAAAAAATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTAACCACACCCGGAAACCGGGTGAAAGCAAGTGGCATTCTTGTTCTGT</left_flank>
        <right_flank>AAAAAAATTCAAAAGTCATGTGCACATCAAAGGGTTTCTTAGAATGTGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATACATGTTGACATCCCCATTGACTGCCTCTGGAACAGGTTCAGCGTGGATCTCTAGCATTTTTGCTCCGAAGTCTTCGTCCGATCCAGCTCGAATGTAAACCCAGATATCGGATAGTTTTCCAGCTTTTCAGAATTTCGATAACTTCCGACTATATGAATCCAAAAGAATGATTTCACGGCATCTGTTGAAAACATTGATCACATGCCAGGCTGAGACCCATTTGGAAGATAATATCTGGAGTATTTCGTTTTCCAAACTTTCAGAGAAAGGCGTCTTGAAGTCGAAAATATTCTTGAAATTCTCCGTTGGTTGACAGTGGAGCTTGAGATGCCTTGCTTTTTTGAGTGGCACGTTCGGACGATCGCTTCATTATCTGGAACACAAGTGACAGCATAAATTTTGCAGAACGACATCTCACAAATCGTAGCACTCCATAATTTCTTTTTTAACCACACCCGGAAACCGGGTGAAAGCAAGTGGCATTCTTGTTCTGTAAAAAAAATTCAAAAGTCATGTGCACATCAAAGGGTTTCTTAGAATGTGTGAAGAGAACAAGAATGGTAATCACGTTGGTGTAAAAGGAGAATGAAAACAGAGAGTGAAAGAGACGAATTTTGGAATTTAGAAAGGGTGGAATTTCGTGGAAGGGAGGCCTTATCCGGATTTAAATGGGGAAAAACGACAATGTGCGTTATTAAAAATAGAGGGAATAGGCGGAGTGGTAACTAAGAAACGACGAACTACTATTCTCTTCTCCAAAACGTTTACGAGCACTACACACGTTTATGGAAAAGAGAAAGGGGCGAGAAATCTCGATAGCATTGTGATAGAGAATATTTGGGCAAATGTGCGTCCAAAAAGTCCAGGAAGCGTGAATGTTGGTTGTAACCACTGCAGCAGAACATTATTTTCATAATTTGAGAAAGAAGCTGAGGTGAATAGAGATAAGTAAAGATTGCTGCTATCGTTTTTTTTAAATTATTTGCTTTTTTTGA</canonical>
            <polymorphic>ATATACATGTTGACATCCCCATTGACTGCCTCTGGAACAGGTTCAGCGTGGATCTCTAGCATTTTTGCTCCGAAGTCTTCGTCCGATCCAGCTCGAATGTAAACCCAGATATCGGATAGTTTTCCAGCTTTTCAGAATTTCGATAACTTCCGACTATATGAATCCAAAAGAATGATTTCACGGCATCTGTTGAAAACATTGATCACATGCCAGGCTGAGACCCATTTGGAAGATAATATCTGGAGTATTTCGTTTTCCAAACTTTCAGAGAAAGGCGTCTTGAAGTCGAAAATATTCTTGAAATTCTCCGTTGGTTGACAGTGGAGCTTGAGATGCCTTGCTTTTTTGAGTGGCACGTTCGGACGATCGCTTCATTATCTGGAACACAAGTGACAGCATAAATTTTGCAGAACGACATCTCACAAATCGTAGCACTCCATAATTTCTTTTTTAACCACACCCGGAAACCGGGTGAAAGCAAGTGGCATTCTTGTTCTGTSAAAAAAATTCAAAAGTCATGTGCACATCAAAGGGTTTCTTAGAATGTGTGAAGAGAACAAGAATGGTAATCACGTTGGTGTAAAAGGAGAATGAAAACAGAGAGTGAAAGAGACGAATTTTGGAATTTAGAAAGGGTGGAATTTCGTGGAAGGGAGGCCTTATCCGGATTTAAATGGGGAAAAACGACAATGTGCGTTATTAAAAATAGAGGGAATAGGCGGAGTGGTAACTAAGAAACGACGAACTACTATTCTCTTCTCCAAAACGTTTACGAGCACTACACACGTTTATGGAAAAGAGAAAGGGGCGAGAAATCTCGATAGCATTGTGATAGAGAATATTTGGGCAAATGTGCGTCCAAAAAGTCCAGGAAGCGTGAATGTTGGTTGTAACCACTGCAGCAGAACATTATTTTCATAATTTGAGAAAGAAGCTGAGGTGAATAGAGATAAGTAAAGATTGCTGCTATCGTTTTTTTTAAATTATTTGCTTTTTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTATCTGGAACACAAGTGAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCGTCTCTTTCACTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATTATCTGGAACACAAGTGACAGCATAAATTTTGCAGAACGACATCTCACAAATCGTAGCACTCCATAATTTCTTTTTTAACCACACCCGGAAACCGGGTGAAAGCAAGTGGCATTCTTGTTCTGTAAAAAAAATTCAAAAGTCATGTGCACATCAAAGGGTTTCTTAGAATGTGTGAAGAGAACAAGAATGGTAATCACGTTGGTGTAAAAGGAGAATGAAAACAGAGAGTGAAAGAGACGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>CATTATCTGGAACACAAGTGACAGCATAAATTTTGCAGAACGACATCTCACAAATCGTAGCACTCCATAATTTCTTTTTTAACCACACCCGGAAACCGGGTGAAAGCAAGTGGCATTCTTGTTCTGTSAAAAAAATTCAAAAGTCATGTGCACATCAAAGGGTTTCTTAGAATGTGTGAAGAGAACAAGAATGGTAATCACGTTGGTGTAAAAGGAGAATGAAAACAGAGAGTGAAAGAGACGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37877</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>559248</contig_pos>
        <strand>+</strand>
        <context>GTCATGTGCA[C/G]ATCAAAGGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAGCAAGTGGCATTCTTGTTCTGTAAAAAAAATTCAAAAGTCATGTGCA</left_flank>
        <right_flank>ATCAAAGGGTTTCTTAGAATGTGTGAAGAGAACAAGAATGGTAATCACGT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGCCTCTGGAACAGGTTCAGCGTGGATCTCTAGCATTTTTGCTCCGAAGTCTTCGTCCGATCCAGCTCGAATGTAAACCCAGATATCGGATAGTTTTCCAGCTTTTCAGAATTTCGATAACTTCCGACTATATGAATCCAAAAGAATGATTTCACGGCATCTGTTGAAAACATTGATCACATGCCAGGCTGAGACCCATTTGGAAGATAATATCTGGAGTATTTCGTTTTCCAAACTTTCAGAGAAAGGCGTCTTGAAGTCGAAAATATTCTTGAAATTCTCCGTTGGTTGACAGTGGAGCTTGAGATGCCTTGCTTTTTTGAGTGGCACGTTCGGACGATCGCTTCATTATCTGGAACACAAGTGACAGCATAAATTTTGCAGAACGACATCTCACAAATCGTAGCACTCCATAATTTCTTTTTTAACCACACCCGGAAACCGGGTGAAAGCAAGTGGCATTCTTGTTCTGTAAAAAAAATTCAAAAGTCATGTGCACATCAAAGGGTTTCTTAGAATGTGTGAAGAGAACAAGAATGGTAATCACGTTGGTGTAAAAGGAGAATGAAAACAGAGAGTGAAAGAGACGAATTTTGGAATTTAGAAAGGGTGGAATTTCGTGGAAGGGAGGCCTTATCCGGATTTAAATGGGGAAAAACGACAATGTGCGTTATTAAAAATAGAGGGAATAGGCGGAGTGGTAACTAAGAAACGACGAACTACTATTCTCTTCTCCAAAACGTTTACGAGCACTACACACGTTTATGGAAAAGAGAAAGGGGCGAGAAATCTCGATAGCATTGTGATAGAGAATATTTGGGCAAATGTGCGTCCAAAAAGTCCAGGAAGCGTGAATGTTGGTTGTAACCACTGCAGCAGAACATTATTTTCATAATTTGAGAAAGAAGCTGAGGTGAATAGAGATAAGTAAAGATTGCTGCTATCGTTTTTTTTAAATTATTTGCTTTTTTTGAATTAACTAGCATCTGATACTCTAGG</canonical>
            <polymorphic>CTGCCTCTGGAACAGGTTCAGCGTGGATCTCTAGCATTTTTGCTCCGAAGTCTTCGTCCGATCCAGCTCGAATGTAAACCCAGATATCGGATAGTTTTCCAGCTTTTCAGAATTTCGATAACTTCCGACTATATGAATCCAAAAGAATGATTTCACGGCATCTGTTGAAAACATTGATCACATGCCAGGCTGAGACCCATTTGGAAGATAATATCTGGAGTATTTCGTTTTCCAAACTTTCAGAGAAAGGCGTCTTGAAGTCGAAAATATTCTTGAAATTCTCCGTTGGTTGACAGTGGAGCTTGAGATGCCTTGCTTTTTTGAGTGGCACGTTCGGACGATCGCTTCATTATCTGGAACACAAGTGACAGCATAAATTTTGCAGAACGACATCTCACAAATCGTAGCACTCCATAATTTCTTTTTTAACCACACCCGGAAACCGGGTGAAAGCAAGTGGCATTCTTGTTCTGTAAAAAAAATTCAAAAGTCATGTGCASATCAAAGGGTTTCTTAGAATGTGTGAAGAGAACAAGAATGGTAATCACGTTGGTGTAAAAGGAGAATGAAAACAGAGAGTGAAAGAGACGAATTTTGGAATTTAGAAAGGGTGGAATTTCGTGGAAGGGAGGCCTTATCCGGATTTAAATGGGGAAAAACGACAATGTGCGTTATTAAAAATAGAGGGAATAGGCGGAGTGGTAACTAAGAAACGACGAACTACTATTCTCTTCTCCAAAACGTTTACGAGCACTACACACGTTTATGGAAAAGAGAAAGGGGCGAGAAATCTCGATAGCATTGTGATAGAGAATATTTGGGCAAATGTGCGTCCAAAAAGTCCAGGAAGCGTGAATGTTGGTTGTAACCACTGCAGCAGAACATTATTTTCATAATTTGAGAAAGAAGCTGAGGTGAATAGAGATAAGTAAAGATTGCTGCTATCGTTTTTTTTAAATTATTTGCTTTTTTTGAATTAACTAGCATCTGATACTCTAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>499 254 247</canonical_bands>
                <polymorphic_bands>753 247</polymorphic_bands>
            </assay>
            <assay>
                <site>GTGCAC</site>
                <isoschizomers>
                    <enzyme>Alw44I</enzyme>
                    <enzyme>ApaLI</enzyme>
                    <enzyme>VneI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>499 254 247</canonical_bands>
                <polymorphic_bands>753 247</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>130 118 83 52 46 46 46 38 32 32 31 30 29 26 25 25 24 24 24 23 22 17 15 12 10 10 8 6 5 3 2 2 2 2</canonical_bands>
                <polymorphic_bands>130 118 83 52 46 46 46 38 32 32 31 30 29 26 26 25 25 24 24 23 22 17 15 12 10 10 8 6 5 3 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>255 248 215 206 76</canonical_bands>
                <polymorphic_bands>454 255 215 76</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTATCTGGAACACAAGTGAC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTCGTCTCTTTCACTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CATTATCTGGAACACAAGTGACAGCATAAATTTTGCAGAACGACATCTCACAAATCGTAGCACTCCATAATTTCTTTTTTAACCACACCCGGAAACCGGGTGAAAGCAAGTGGCATTCTTGTTCTGTAAAAAAAATTCAAAAGTCATGTGCACATCAAAGGGTTTCTTAGAATGTGTGAAGAGAACAAGAATGGTAATCACGTTGGTGTAAAAGGAGAATGAAAACAGAGAGTGAAAGAGACGAATTTT</canonical_amplicon>
		<polymorphic_amplicon>CATTATCTGGAACACAAGTGACAGCATAAATTTTGCAGAACGACATCTCACAAATCGTAGCACTCCATAATTTCTTTTTTAACCACACCCGGAAACCGGGTGAAAGCAAGTGGCATTCTTGTTCTGTAAAAAAAATTCAAAAGTCATGTGCASATCAAAGGGTTTCTTAGAATGTGTGAAGAGAACAAGAATGGTAATCACGTTGGTGTAAAAGGAGAATGAAAACAGAGAGTGAAAGAGACGAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37878</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>559696</contig_pos>
        <strand>+</strand>
        <context>GCTGCTATCG[A/T]TTTTTTTAAW</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGAGAAAGAAGCTGAGGTGAATAGAGATAAGTAAAGATTGCTGCTATCG</left_flank>
        <right_flank>TTTTTTTAAATTATTTGCTTTTTTTGAATTAACTAGCATCTGATACTCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAGCAAGTGGCATTCTTGTTCTGTAAAAAAAATTCAAAAGTCATGTGCACATCAAAGGGTTTCTTAGAATGTGTGAAGAGAACAAGAATGGTAATCACGTTGGTGTAAAAGGAGAATGAAAACAGAGAGTGAAAGAGACGAATTTTGGAATTTAGAAAGGGTGGAATTTCGTGGAAGGGAGGCCTTATCCGGATTTAAATGGGGAAAAACGACAATGTGCGTTATTAAAAATAGAGGGAATAGGCGGAGTGGTAACTAAGAAACGACGAACTACTATTCTCTTCTCCAAAACGTTTACGAGCACTACACACGTTTATGGAAAAGAGAAAGGGGCGAGAAATCTCGATAGCATTGTGATAGAGAATATTTGGGCAAATGTGCGTCCAAAAAGTCCAGGAAGCGTGAATGTTGGTTGTAACCACTGCAGCAGAACATTATTTTCATAATTTGAGAAAGAAGCTGAGGTGAATAGAGATAAGTAAAGATTGCTGCTATCGTTTTTTTTAAATTATTTGCTTTTTTTGAATTAACTAGCATCTGATACTCTAGGAACCGGTGCTTTTAGATAAGATCAAATTGGAATCTATCAGTCAGGTGGTCACTTTTGAGTACACTCAATTTTTGACTTCATACGTGAGACGGAAATTGGAAAATTGAGCTTATATTGTGCGTTTAATAAGTTTGGAGCCCCGTATATTATACACTGTAAATACAGTTCAATTTCAAATGTGAAATAACCCTAGAACAAAATTTTTTTCCTCCATTTTTGGTGTCTCCGCAAAAGACATCTTTTCAGGCGTGCAATAAGTTTTGAACCCCTTTAGACTTTTGAAATTTTGAATTTTTTTGGCCGATTTTTGGTTTCTAAACTGAAAATTACTTAACTTTTAGTTTTTTTTTCCGTACGATTTCATAAGTATTTCAAAGAATTATCATATTTTGTCGACTTTTGAAATCAAAGATTTCTAAAGTCGATGGTGGTGTCACTGGTCGGTGTC</canonical>
            <polymorphic>GAAAGCAAGTGGCATTCTTGTTCTGTAAAAAAAATTCAAAAGTCATGTGCACATCAAAGGGTTTCTTAGAATGTGTGAAGAGAACAAGAATGGTAATCACGTTGGTGTAAAAGGAGAATGAAAACAGAGAGTGAAAGAGACGAATTTTGGAATTTAGAAAGGGTGGAATTTCGTGGAAGGGAGGCCTTATCCGGATTTAAATGGGGAAAAACGACAATGTGCGTTATTAAAAATAGAGGGAATAGGCGGAGTGGTAACTAAGAAACGACGAACTACTATTCTCTTCTCCAAAACGTTTACGAGCACTACACACGTTTATGGAAAAGAGAAAGGGGCGAGAAATCTCGATAGCATTGTGATAGAGAATATTTGGGCAAATGTGCGTCCAAAAAGTCCAGGAAGCGTGAATGTTGGTTGTAACCACTGCAGCAGAACATTATTTTCATAATTTGAGAAAGAAGCTGAGGTGAATAGAGATAAGTAAAGATTGCTGCTATCGWTTTTTTTAAATTATTTGCTTTTTTTGAATTAACTAGCATCTGATACTCTAGGAACCGGTGCTTTTAGATAAGATCAAATTGGAATCTATCAGTCAGGTGGTCACTTTTGAGTACACTCAATTTTTGACTTCATACGTGAGACGGAAATTGGAAAATTGAGCTTATATTGTGCGTTTAATAAGTTTGGAGCCCCGTATATTATACACTGTAAATACAGTTCAATTTCAAATGTGAAATAACCCTAGAACAAAATTTTTTTCCTCCATTTTTGGTGTCTCCGCAAAAGACATCTTTTCAGGCGTGCAATAAGTTTTGAACCCCTTTAGACTTTTGAAATTTTGAATTTTTTTGGCCGATTTTTGGTTTCTAAACTGAAAATTACTTAACTTTTAGTTTTTTTTTCCGTACGATTTCATAAGTATTTCAAAGAATTATCATATTTTGTCGACTTTTGAAATCAAAGATTTCTAAAGTCGATGGTGGTGTCACTGGTCGGTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATAATTTGAGAAAGAAGCTGAG</pcr_primer_p1>
		<pcr_primer_p2>CCAAACTTATTAAACGCACAAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CATAATTTGAGAAAGAAGCTGAGGTGAATAGAGATAAGTAAAGATTGCTGCTATCGTTTTTTTTAAATTATTTGCTTTTTTTGAATTAACTAGCATCTGATACTCTAGGAACCGGTGCTTTTAGATAAGATCAAATTGGAATCTATCAGTCAGGTGGTCACTTTTGAGTACACTCAATTTTTGACTTCATACGTGAGACGGAAATTGGAAAATTGAGCTTATATTGTGCGTTTAATAAGTTTGG</canonical_amplicon>
		<polymorphic_amplicon>CATAATTTGAGAAAGAAGCTGAGGTGAATAGAGATAAGTAAAGATTGCTGCTATCGWTTTTTTTAAATTATTTGCTTTTTTTGAATTAACTAGCATCTGATACTCTAGGAACCGGTGCTTTTAGATAAGATCAAATTGGAATCTATCAGTCAGGTGGTCACTTTTGAGTACACTCAATTTTTGACTTCATACGTGAGACGGAAATTGGAAAATTGAGCTTATATTGTGCGTTTAATAAGTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37879</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>561536</contig_pos>
        <strand>+</strand>
        <context>GTGTGACCCA[C/T]TTTGACCAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTTCCTTGCATTTTTTGAAGTTTTTCATTATAATTTCCGGTGTGACCCA</left_flank>
        <right_flank>TTTGACCAAAAAAGTTTCCAATTTTTGACTTCCGAGGACTTTGTTGGCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATCCATAAAAGGGGAGTTATTTTGATTGAATGAATTCAAAAAAAAACACAAGAAATTGCCTGCTCGAGCATTCTTAGTACTGCAACAACGGTGAATCACAATCGAGGACCAACGTGCCGTGAGCTTCGTTGTCCTGGTACGCAATAACAGCTCGAACTCCGGTATTGTCTTGTGCGATCACGAAACAGTTTGGCAGCATCGCTGGAACCCTGAAACAACTTTTTTGGTTGAGGAGTCTGAAAATATCGACAAGAAAACTCACATGAACTGATAAGGAAATGGACGAAATCCATCGAAAAAATAATCGCCCTCGAGTTCTCTGAAAATCTGTGCTCCGTACCACCTCTGACCGACGTTCAAGCGCAATTTTCGGATTGAAGATCCCGTTTTCCAATGTTTCAAAATGCGAATCACGTCCAATTGATCAAAGCTGCTGTTATGGAGCAAGAGTTCCTTGCATTTTTTGAAGTTTTTCATTATAATTTCCGGTGTGACCCACTTTGACCAAAAAAGTTTCCAATTTTTGACTTCCGAGGACTTTGTTGGCCAGAGATCTCCCGATTTCATCCCGAAACCCGTAGATTGTTGGTCGGCACATCAGACTCAATGAAGTTGTTTCACTGCACAATGAAATTGATTTCATAATTAGCTGATTACCAGTATATTCTTCCAAGATCAGGTTCGTTACTGGAACCTTTGACAGGTGCACAATGTCAAGGATAGCGGCAACAAAATTGGAGCTTCCGAGATGTTTGAATGAAATTGCAATCTTCAGATTCCCAGTAAATAGAGGAAAGTACTGTTTGATGTAATCTTTGAATTTCTCCAGTTGTGATTCCTCGAACTCGGGGGCCGGGGGGGGGGGGGGGGGGTCGAAGAGCAAGTCTCGAAACCTGTCGCGATCTTTTTGATAATATTCCCAAATTGAGACTGAAAAAAGATCCAATACTTATAAATAAGTGATATATAAGAACTTACAGATCAGCGAGATGCAATTCG</canonical>
            <polymorphic>GATCCATAAAAGGGGAGTTATTTTGATTGAATGAATTCAAAAAAAAACACAAGAAATTGCCTGCTCGAGCATTCTTAGTACTGCAACAACGGTGAATCACAATCGAGGACCAACGTGCCGTGAGCTTCGTTGTCCTGGTACGCAATAACAGCTCGAACTCCGGTATTGTCTTGTGCGATCACGAAACAGTTTGGCAGCATCGCTGGAACCCTGAAACAACTTTTTTGGTTGAGGAGTCTGAAAATATCGACAAGAAAACTCACATGAACTGATAAGGAAATGGACGAAATCCATCGAAAAAATAATCGCCCTCGAGTTCTCTGAAAATCTGTGCTCCGTACCACCTCTGACCGACGTTCAAGCGCAATTTTCGGATTGAAGATCCCGTTTTCCAATGTTTCAAAATGCGAATCACGTCCAATTGATCAAAGCTGCTGTTATGGAGCAAGAGTTCCTTGCATTTTTTGAAGTTTTTCATTATAATTTCCGGTGTGACCCAYTTTGACCAAAAAAGTTTCCAATTTTTGACTTCCGAGGACTTTGTTGGCCAGAGATCTCCCGATTTCATCCCGAAACCCGTAGATTGTTGGTCGGCACATCAGACTCAATGAAGTTGTTTCACTGCACAATGAAATTGATTTCATAATTAGCTGATTACCAGTATATTCTTCCAAGATCAGGTTCGTTACTGGAACCTTTGACAGGTGCACAATGTCAAGGATAGCGGCAACAAAATTGGAGCTTCCGAGATGTTTGAATGAAATTGCAATCTTCAGATTCCCAGTAAATAGAGGAAAGTACTGTTTGATGTAATCTTTGAATTTCTCCAGTTGTGATTCCTCGAACTCGGGGGCCGGGGGGGGGGGGGGGGGGTCGAAGAGCAAGTCTCGAAACCTGTCGCGATCTTTTTGATAATATTCCCAAATTGAGACTGAAAAAAGATCCAATACTTATAAATAAGTGATATATAAGAACTTACAGATCAGCGAGATGCAATTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>128 126 97 81 81 78 71 71 53 49 45 37 25 18 10 6 5 5 5 5 2 2</canonical_bands>
                <polymorphic_bands>128 126 102 81 81 78 71 71 53 49 45 37 25 18 10 6 5 5 5 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTATGGAGCAAGAGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CTGATCTTGGAAGAATATACTGG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TGTTATGGAGCAAGAGTTCCTTGCATTTTTTGAAGTTTTTCATTATAATTTCCGGTGTGACCCACTTTGACCAAAAAAGTTTCCAATTTTTGACTTCCGAGGACTTTGTTGGCCAGAGATCTCCCGATTTCATCCCGAAACCCGTAGATTGTTGGTCGGCACATCAGACTCAATGAAGTTGTTTCACTGCACAATGAAATTGATTTCATAATTAGCTGATTACCAGTATATTCTTCCAAGATCAG</canonical_amplicon>
		<polymorphic_amplicon>TGTTATGGAGCAAGAGTTCCTTGCATTTTTTGAAGTTTTTCATTATAATTTCCGGTGTGACCCAYTTTGACCAAAAAAGTTTCCAATTTTTGACTTCCGAGGACTTTGTTGGCCAGAGATCTCCCGATTTCATCCCGAAACCCGTAGATTGTTGGTCGGCACATCAGACTCAATGAAGTTGTTTCACTGCACAATGAAATTGATTTCATAATTAGCTGATTACCAGTATATTCTTCCAAGATCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37880</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>561552</contig_pos>
        <strand>+</strand>
        <context>CCAAAAAAGT[C/T]TCCAATTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAGTTTTTCATTATAATTTCCGGTGTGACCCACTTTGACCAAAAAAGT</left_flank>
        <right_flank>TCCAATTTTTGACTTCCGAGGACTTTGTTGGCCAGAGATCTCCCGATTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTATTTTGATTGAATGAATTCAAAAAAAAACACAAGAAATTGCCTGCTCGAGCATTCTTAGTACTGCAACAACGGTGAATCACAATCGAGGACCAACGTGCCGTGAGCTTCGTTGTCCTGGTACGCAATAACAGCTCGAACTCCGGTATTGTCTTGTGCGATCACGAAACAGTTTGGCAGCATCGCTGGAACCCTGAAACAACTTTTTTGGTTGAGGAGTCTGAAAATATCGACAAGAAAACTCACATGAACTGATAAGGAAATGGACGAAATCCATCGAAAAAATAATCGCCCTCGAGTTCTCTGAAAATCTGTGCTCCGTACCACCTCTGACCGACGTTCAAGCGCAATTTTCGGATTGAAGATCCCGTTTTCCAATGTTTCAAAATGCGAATCACGTCCAATTGATCAAAGCTGCTGTTATGGAGCAAGAGTTCCTTGCATTTTTTGAAGTTTTTCATTATAATTTCCGGTGTGACCCACTTTGACCAAAAAAGTTTCCAATTTTTGACTTCCGAGGACTTTGTTGGCCAGAGATCTCCCGATTTCATCCCGAAACCCGTAGATTGTTGGTCGGCACATCAGACTCAATGAAGTTGTTTCACTGCACAATGAAATTGATTTCATAATTAGCTGATTACCAGTATATTCTTCCAAGATCAGGTTCGTTACTGGAACCTTTGACAGGTGCACAATGTCAAGGATAGCGGCAACAAAATTGGAGCTTCCGAGATGTTTGAATGAAATTGCAATCTTCAGATTCCCAGTAAATAGAGGAAAGTACTGTTTGATGTAATCTTTGAATTTCTCCAGTTGTGATTCCTCGAACTCGGGGGCCGGGGGGGGGGGGGGGGGGTCGAAGAGCAAGTCTCGAAACCTGTCGCGATCTTTTTGATAATATTCCCAAATTGAGACTGAAAAAAGATCCAATACTTATAAATAAGTGATATATAAGAACTTACAGATCAGCGAGATGCAATTCGCCAGCAATTCTGTCAA</canonical>
            <polymorphic>GTTATTTTGATTGAATGAATTCAAAAAAAAACACAAGAAATTGCCTGCTCGAGCATTCTTAGTACTGCAACAACGGTGAATCACAATCGAGGACCAACGTGCCGTGAGCTTCGTTGTCCTGGTACGCAATAACAGCTCGAACTCCGGTATTGTCTTGTGCGATCACGAAACAGTTTGGCAGCATCGCTGGAACCCTGAAACAACTTTTTTGGTTGAGGAGTCTGAAAATATCGACAAGAAAACTCACATGAACTGATAAGGAAATGGACGAAATCCATCGAAAAAATAATCGCCCTCGAGTTCTCTGAAAATCTGTGCTCCGTACCACCTCTGACCGACGTTCAAGCGCAATTTTCGGATTGAAGATCCCGTTTTCCAATGTTTCAAAATGCGAATCACGTCCAATTGATCAAAGCTGCTGTTATGGAGCAAGAGTTCCTTGCATTTTTTGAAGTTTTTCATTATAATTTCCGGTGTGACCCACTTTGACCAAAAAAGTYTCCAATTTTTGACTTCCGAGGACTTTGTTGGCCAGAGATCTCCCGATTTCATCCCGAAACCCGTAGATTGTTGGTCGGCACATCAGACTCAATGAAGTTGTTTCACTGCACAATGAAATTGATTTCATAATTAGCTGATTACCAGTATATTCTTCCAAGATCAGGTTCGTTACTGGAACCTTTGACAGGTGCACAATGTCAAGGATAGCGGCAACAAAATTGGAGCTTCCGAGATGTTTGAATGAAATTGCAATCTTCAGATTCCCAGTAAATAGAGGAAAGTACTGTTTGATGTAATCTTTGAATTTCTCCAGTTGTGATTCCTCGAACTCGGGGGCCGGGGGGGGGGGGGGGGGGTCGAAGAGCAAGTCTCGAAACCTGTCGCGATCTTTTTGATAATATTCCCAAATTGAGACTGAAAAAAGATCCAATACTTATAAATAAGTGATATATAAGAACTTACAGATCAGCGAGATGCAATTCGCCAGCAATTCTGTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTATGGAGCAAGAGTTCC</pcr_primer_p1>
		<pcr_primer_p2>CTGATCTTGGAAGAATATACTGG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TGTTATGGAGCAAGAGTTCCTTGCATTTTTTGAAGTTTTTCATTATAATTTCCGGTGTGACCCACTTTGACCAAAAAAGTTTCCAATTTTTGACTTCCGAGGACTTTGTTGGCCAGAGATCTCCCGATTTCATCCCGAAACCCGTAGATTGTTGGTCGGCACATCAGACTCAATGAAGTTGTTTCACTGCACAATGAAATTGATTTCATAATTAGCTGATTACCAGTATATTCTTCCAAGATCAG</canonical_amplicon>
		<polymorphic_amplicon>TGTTATGGAGCAAGAGTTCCTTGCATTTTTTGAAGTTTTTCATTATAATTTCCGGTGTGACCCACTTTGACCAAAAAAGTYTCCAATTTTTGACTTCCGAGGACTTTGTTGGCCAGAGATCTCCCGATTTCATCCCGAAACCCGTAGATTGTTGGTCGGCACATCAGACTCAATGAAGTTGTTTCACTGCACAATGAAATTGATTTCATAATTAGCTGATTACCAGTATATTCTTCCAAGATCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37881</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>561657</contig_pos>
        <strand>+</strand>
        <context>AAGTTGTTTC[A/T]CTGCACAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGAAACCCGTAGATTGTTGGTCGGCACATCAGACTCAATGAAGTTGTTTC</left_flank>
        <right_flank>CTGCACAATGAAATTGATTTCATAATTAGCTGATTACCAGTATATTCTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGCTTCGTTGTCCTGGTACGCAATAACAGCTCGAACTCCGGTATTGTCTTGTGCGATCACGAAACAGTTTGGCAGCATCGCTGGAACCCTGAAACAACTTTTTTGGTTGAGGAGTCTGAAAATATCGACAAGAAAACTCACATGAACTGATAAGGAAATGGACGAAATCCATCGAAAAAATAATCGCCCTCGAGTTCTCTGAAAATCTGTGCTCCGTACCACCTCTGACCGACGTTCAAGCGCAATTTTCGGATTGAAGATCCCGTTTTCCAATGTTTCAAAATGCGAATCACGTCCAATTGATCAAAGCTGCTGTTATGGAGCAAGAGTTCCTTGCATTTTTTGAAGTTTTTCATTATAATTTCCGGTGTGACCCACTTTGACCAAAAAAGTTTCCAATTTTTGACTTCCGAGGACTTTGTTGGCCAGAGATCTCCCGATTTCATCCCGAAACCCGTAGATTGTTGGTCGGCACATCAGACTCAATGAAGTTGTTTCACTGCACAATGAAATTGATTTCATAATTAGCTGATTACCAGTATATTCTTCCAAGATCAGGTTCGTTACTGGAACCTTTGACAGGTGCACAATGTCAAGGATAGCGGCAACAAAATTGGAGCTTCCGAGATGTTTGAATGAAATTGCAATCTTCAGATTCCCAGTAAATAGAGGAAAGTACTGTTTGATGTAATCTTTGAATTTCTCCAGTTGTGATTCCTCGAACTCGGGGGCCGGGGGGGGGGGGGGGGGGTCGAAGAGCAAGTCTCGAAACCTGTCGCGATCTTTTTGATAATATTCCCAAATTGAGACTGAAAAAAGATCCAATACTTATAAATAAGTGATATATAAGAACTTACAGATCAGCGAGATGCAATTCGCCAGCAATTCTGTCAATTACAGAAACAGGAAAACCAAAGAAATCTATAGACATTGTGGATGCCTGAACTAAATTGAATAAGAGCTGCCAAAACGTGGTTGTCAGGAAATGGGCGGAGCCAA</canonical>
            <polymorphic>GAGCTTCGTTGTCCTGGTACGCAATAACAGCTCGAACTCCGGTATTGTCTTGTGCGATCACGAAACAGTTTGGCAGCATCGCTGGAACCCTGAAACAACTTTTTTGGTTGAGGAGTCTGAAAATATCGACAAGAAAACTCACATGAACTGATAAGGAAATGGACGAAATCCATCGAAAAAATAATCGCCCTCGAGTTCTCTGAAAATCTGTGCTCCGTACCACCTCTGACCGACGTTCAAGCGCAATTTTCGGATTGAAGATCCCGTTTTCCAATGTTTCAAAATGCGAATCACGTCCAATTGATCAAAGCTGCTGTTATGGAGCAAGAGTTCCTTGCATTTTTTGAAGTTTTTCATTATAATTTCCGGTGTGACCCACTTTGACCAAAAAAGTTTCCAATTTTTGACTTCCGAGGACTTTGTTGGCCAGAGATCTCCCGATTTCATCCCGAAACCCGTAGATTGTTGGTCGGCACATCAGACTCAATGAAGTTGTTTCWCTGCACAATGAAATTGATTTCATAATTAGCTGATTACCAGTATATTCTTCCAAGATCAGGTTCGTTACTGGAACCTTTGACAGGTGCACAATGTCAAGGATAGCGGCAACAAAATTGGAGCTTCCGAGATGTTTGAATGAAATTGCAATCTTCAGATTCCCAGTAAATAGAGGAAAGTACTGTTTGATGTAATCTTTGAATTTCTCCAGTTGTGATTCCTCGAACTCGGGGGCCGGGGGGGGGGGGGGGGGGTCGAAGAGCAAGTCTCGAAACCTGTCGCGATCTTTTTGATAATATTCCCAAATTGAGACTGAAAAAAGATCCAATACTTATAAATAAGTGATATATAAGAACTTACAGATCAGCGAGATGCAATTCGCCAGCAATTCTGTCAATTACAGAAACAGGAAAACCAAAGAAATCTATAGACATTGTGGATGCCTGAACTAAATTGAATAAGAGCTGCCAAAACGTGGTTGTCAGGAAATGGGCGGAGCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>128 126 97 94 81 81 78 71 71 54 39 25 25 10 6 5 5 2 2</canonical_bands>
                <polymorphic_bands>128 126 97 94 81 81 78 71 71 54 39 30 25 10 6 5 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGATCTCCCGATTTCATC</pcr_primer_p1>
		<pcr_primer_p2>CTTTCCTCTATTTACTGGGAATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGAGATCTCCCGATTTCATCCCGAAACCCGTAGATTGTTGGTCGGCACATCAGACTCAATGAAGTTGTTTCACTGCACAATGAAATTGATTTCATAATTAGCTGATTACCAGTATATTCTTCCAAGATCAGGTTCGTTACTGGAACCTTTGACAGGTGCACAATGTCAAGGATAGCGGCAACAAAATTGGAGCTTCCGAGATGTTTGAATGAAATTGCAATCTTCAGATTCCCAGTAAATAGAGGAAAG</canonical_amplicon>
		<polymorphic_amplicon>AGAGATCTCCCGATTTCATCCCGAAACCCGTAGATTGTTGGTCGGCACATCAGACTCAATGAAGTTGTTTCWCTGCACAATGAAATTGATTTCATAATTAGCTGATTACCAGTATATTCTTCCAAGATCAGGTTCGTTACTGGAACCTTTGACAGGTGCACAATGTCAAGGATAGCGGCAACAAAATTGGAGCTTCCGAGATGTTTGAATGAAATTGCAATCTTCAGATTCCCAGTAAATAGAGGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37882</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>632946</contig_pos>
        <strand>+</strand>
        <context>TTTGTTTTTT[C/T]TTTAAAATCC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCAAAACTTTTGTTTTTTTTTCGAAAATTGACTTAAAATTTTGTTTTTT</left_flank>
        <right_flank>TTTAAAATCCATTTTTGAGCAATTCGGTGACACTGAAAACTGTTCACTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGGGTTCTGCAGAAGTCGAAGAAAAAAGAAAACGCGAGGCTTGATCAGCAAACCCCGCACAGGAAATAGTTGGAATTGTGAAGAAGGGCAACCCATTCGTAGCCTAATTAAAACTGACCCCCTCTGAAATATTTATCGACCCCGGTCCACCCCGAAATATTGGGTTGTTGTCAATCTTTTGTTGGGAGAAACACCAGACACGAGAATATGAGTTTTCCGAAAAGAAGTACATCAAAATTATATTTGAAAAAGAAAGAGTCAATTCAGTTTTTCGCACAAAAAATGTGATTTTGGAATGCTTACACTCATATTCTCAGCTGACAAGCTTTTTAGACCAACAACCAAGGATCAGTAGAATAATCGAAAAACGTTTTATAAATATTTTTGACACTTTTGACGGAAATTGAGAGTATTTCCGATCTCATAATGAACAATAAAATAGTTTTATCAAAACTTTTGTTTTTTTTTCGAAAATTGACTTAAAATTTTGTTTTTTGTTTAAAATCCATTTTTGAGCAATTCGGTGACACTGAAAACTGTTCACTTTTAAATACCGTATTTTCTCTGATAGAAGCTCATTTTATGCGTACACTTTGAGCTTTATTATCTCGGTCCCTATGAGATATATTAGAAATTTGTCAGATGATAAAATATTGGTGATATTATGATAAACAATTCATCAGTTGACTACTCTTTGATATCTTTGAGAGCAACCAAGATAAATTGGCTGAAAGTTATAAGTGAGGGGCCCTTCTAGTAGAGGTTTTTCAGTATTATTCTGAATTGAACTTCTTGAATTTTTTGAGAGAAAATTGAGAATTTTCAAAGAAAGATCTGGTTTTGGTAACTAACCCAAGAAAAATTTAGAAATTGATCACATGTAGCATTTTATCGGTCAAAAACTATTGAAATTTCACTGAATATCGGCTGAAAATGAATGAAAATTGGTTAAAAATCGAAAACTTTGAATTTTTGAATTTTCGGATTTTCCACTTTC</canonical>
            <polymorphic>TTTGGGGTTCTGCAGAAGTCGAAGAAAAAAGAAAACGCGAGGCTTGATCAGCAAACCCCGCACAGGAAATAGTTGGAATTGTGAAGAAGGGCAACCCATTCGTAGCCTAATTAAAACTGACCCCCTCTGAAATATTTATCGACCCCGGTCCACCCCGAAATATTGGGTTGTTGTCAATCTTTTGTTGGGAGAAACACCAGACACGAGAATATGAGTTTTCCGAAAAGAAGTACATCAAAATTATATTTGAAAAAGAAAGAGTCAATTCAGTTTTTCGCACAAAAAATGTGATTTTGGAATGCTTACACTCATATTCTCAGCTGACAAGCTTTTTAGACCAACAACCAAGGATCAGTAGAATAATCGAAAAACGTTTTATAAATATTTTTGACACTTTTGACGGAAATTGAGAGTATTTCCGATCTCATAATGAACAATAAAATAGTTTTATCAAAACTTTTGTTTTTTTTTCGAAAATTGACTTAAAATTTTGTTTTTTYTTTAAAATCCATTTTTGAGCAATTCGGTGACACTGAAAACTGTTCACTTTTAAATACCGTATTTTCTCTGATAGAAGCTCATTTTATGCGTACACTTTGAGCTTTATTATCTCGGTCCCTATGAGATATATTAGAAATTTGTCAGATGATAAAATATTGGTGATATTATGATAAACAATTCATCAGTTGACTACTCTTTGATATCTTTGAGAGCAACCAAGATAAATTGGCTGAAAGTTATAAGTGAGGGGCCCTTCTAGTAGAGGTTTTTCAGTATTATTCTGAATTGAACTTCTTGAATTTTTTGAGAGAAAATTGAGAATTTTCAAAGAAAGATCTGGTTTTGGTAACTAACCCAAGAAAAATTTAGAAATTGATCACATGTAGCATTTTATCGGTCAAAAACTATTGAAATTTCACTGAATATCGGCTGAAAATGAATGAAAATTGGTTAAAAATCGAAAACTTTGAATTTTTGAATTTTCGGATTTTCCACTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGATCTCATAATGAACAATAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCAAGAAGTTCAATTCAGAATAA</pcr_primer_p2>
		<pcr_amplicon_size>382</pcr_amplicon_size>
		<canonical_amplicon>CCGATCTCATAATGAACAATAAAATAGTTTTATCAAAACTTTTGTTTTTTTTTCGAAAATTGACTTAAAATTTTGTTTTTTGTTTAAAATCCATTTTTGAGCAATTCGGTGACACTGAAAACTGTTCACTTTTAAATACCGTATTTTCTCTGATAGAAGCTCATTTTATGCGTACACTTTGAGCTTTATTATCTCGGTCCCTATGAGATATATTAGAAATTTGTCAGATGATAAAATATTGGTGATATTATGATAAACAATTCATCAGTTGACTACTCTTTGATATCTTTGAGAGCAACCAAGATAAATTGGCTGAAAGTTATAAGTGAGGGGCCCTTCTAGTAGAGGTTTTTCAGTATTATTCTGAATTGAACTTCTTGAA</canonical_amplicon>
		<polymorphic_amplicon>CCGATCTCATAATGAACAATAAAATAGTTTTATCAAAACTTTTGTTTTTTTTTCGAAAATTGACTTAAAATTTTGTTTTTTYTTTAAAATCCATTTTTGAGCAATTCGGTGACACTGAAAACTGTTCACTTTTAAATACCGTATTTTCTCTGATAGAAGCTCATTTTATGCGTACACTTTGAGCTTTATTATCTCGGTCCCTATGAGATATATTAGAAATTTGTCAGATGATAAAATATTGGTGATATTATGATAAACAATTCATCAGTTGACTACTCTTTGATATCTTTGAGAGCAACCAAGATAAATTGGCTGAAAGTTATAAGTGAGGGGCCCTTCTAGTAGAGGTTTTTCAGTATTATTCTGAATTGAACTTCTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37883</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>633569</contig_pos>
        <strand>+</strand>
        <context>AACGTTTGTA[C/T]TAAACAATAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAATTTCAGGCCTAGCTAGTTCTTAAATTCAAATATCAAAACGTTTGTA</left_flank>
        <right_flank>TAAACAATAGGAAACAAAAAAAGGAACATCTTTTTCACAGACCCAACTGA</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATATATTAGAAATTTGTCAGATGATAAAATATTGGTGATATTATGATAAACAATTCATCAGTTGACTACTCTTTGATATCTTTGAGAGCAACCAAGATAAATTGGCTGAAAGTTATAAGTGAGGGGCCCTTCTAGTAGAGGTTTTTCAGTATTATTCTGAATTGAACTTCTTGAATTTTTTGAGAGAAAATTGAGAATTTTCAAAGAAAGATCTGGTTTTGGTAACTAACCCAAGAAAAATTTAGAAATTGATCACATGTAGCATTTTATCGGTCAAAAACTATTGAAATTTCACTGAATATCGGCTGAAAATGAATGAAAATTGGTTAAAAATCGAAAACTTTGAATTTTTGAATTTTCGGATTTTCCACTTTCTTGAAAATTCGATATTTGCCGAATTTTCAATTTTCTGGATTTCTGTATTGTTGAAGATTCGAAACACCGTAGCCAATTTCAGGCCTAGCTAGTTCTTAAATTCAAATATCAAAACGTTTGTACTAAACAATAGGAAACAAAAAAAGGAACATCTTTTTCACAGACCCAACTGAACGACTCAAAATGAAGCCATCCTCCATTTTTCCATCGTCAGCTTAAAGCTGCGCAGCTTATACCTCCTCATTTCGCCAACACCCCATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTGCCGCCTTTCACCAAAAAAAGTTATCGCTGGGGGGTCGGAAGATGTCGCAGCGTTTCTTCCGCAATTCGCCGCACCCAAATTATCGGCTATTTAAAGAGAAGAGGGGGGGGGGTCTG</canonical>
            <polymorphic>AGATATATTAGAAATTTGTCAGATGATAAAATATTGGTGATATTATGATAAACAATTCATCAGTTGACTACTCTTTGATATCTTTGAGAGCAACCAAGATAAATTGGCTGAAAGTTATAAGTGAGGGGCCCTTCTAGTAGAGGTTTTTCAGTATTATTCTGAATTGAACTTCTTGAATTTTTTGAGAGAAAATTGAGAATTTTCAAAGAAAGATCTGGTTTTGGTAACTAACCCAAGAAAAATTTAGAAATTGATCACATGTAGCATTTTATCGGTCAAAAACTATTGAAATTTCACTGAATATCGGCTGAAAATGAATGAAAATTGGTTAAAAATCGAAAACTTTGAATTTTTGAATTTTCGGATTTTCCACTTTCTTGAAAATTCGATATTTGCCGAATTTTCAATTTTCTGGATTTCTGTATTGTTGAAGATTCGAAACACCGTAGCCAATTTCAGGCCTAGCTAGTTCTTAAATTCAAATATCAAAACGTTTGTAYTAAACAATAGGAAACAAAAAAAGGAACATCTTTTTCACAGACCCAACTGAACGACTCAAAATGAAGCCATCCTCCATTTTTCCATCGTCAGCTTAAAGCTGCGCAGCTTATACCTCCTCATTTCGCCAACACCCCATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTGCCGCCTTTCACCAAAAAAAGTTATCGCTGGGGGGTCGGAAGATGTCGCAGCGTTTCTTCCGCAATTCGCCGCACCCAAATTATCGGCTATTTAAAGAGAAGAGGGGGGGGGGTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>498 304 198</canonical_bands>
                <polymorphic_bands>696 304</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>496 306 198</canonical_bands>
                <polymorphic_bands>694 306</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAATGAAAATTGGTTAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>CTTCATTTTGAGTCGTTCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TGAATGAAAATTGGTTAAAAATCGAAAACTTTGAATTTTTGAATTTTCGGATTTTCCACTTTCTTGAAAATTCGATATTTGCCGAATTTTCAATTTTCTGGATTTCTGTATTGTTGAAGATTCGAAACACCGTAGCCAATTTCAGGCCTAGCTAGTTCTTAAATTCAAATATCAAAACGTTTGTACTAAACAATAGGAAACAAAAAAAGGAACATCTTTTTCACAGACCCAACTGAACGACTCAAAATGAAG</canonical_amplicon>
		<polymorphic_amplicon>TGAATGAAAATTGGTTAAAAATCGAAAACTTTGAATTTTTGAATTTTCGGATTTTCCACTTTCTTGAAAATTCGATATTTGCCGAATTTTCAATTTTCTGGATTTCTGTATTGTTGAAGATTCGAAACACCGTAGCCAATTTCAGGCCTAGCTAGTTCTTAAATTCAAATATCAAAACGTTTGTAYTAAACAATAGGAAACAAAAAAAGGAACATCTTTTTCACAGACCCAACTGAACGACTCAAAATGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37884</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>633606</contig_pos>
        <strand>+</strand>
        <context>CATCTTTTTC[A/C]CAGACCCAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAAAACGTTTGTACTAAACAATAGGAAACAAAAAAAGGAACATCTTTTTC</left_flank>
        <right_flank>CAGACCCAACTGAACGACTCAAAATGAAGCCATCCTCCATTTTTCCATCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATATTATGATAAACAATTCATCAGTTGACTACTCTTTGATATCTTTGAGAGCAACCAAGATAAATTGGCTGAAAGTTATAAGTGAGGGGCCCTTCTAGTAGAGGTTTTTCAGTATTATTCTGAATTGAACTTCTTGAATTTTTTGAGAGAAAATTGAGAATTTTCAAAGAAAGATCTGGTTTTGGTAACTAACCCAAGAAAAATTTAGAAATTGATCACATGTAGCATTTTATCGGTCAAAAACTATTGAAATTTCACTGAATATCGGCTGAAAATGAATGAAAATTGGTTAAAAATCGAAAACTTTGAATTTTTGAATTTTCGGATTTTCCACTTTCTTGAAAATTCGATATTTGCCGAATTTTCAATTTTCTGGATTTCTGTATTGTTGAAGATTCGAAACACCGTAGCCAATTTCAGGCCTAGCTAGTTCTTAAATTCAAATATCAAAACGTTTGTACTAAACAATAGGAAACAAAAAAAGGAACATCTTTTTCACAGACCCAACTGAACGACTCAAAATGAAGCCATCCTCCATTTTTCCATCGTCAGCTTAAAGCTGCGCAGCTTATACCTCCTCATTTCGCCAACACCCCATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTGCCGCCTTTCACCAAAAAAAGTTATCGCTGGGGGGTCGGAAGATGTCGCAGCGTTTCTTCCGCAATTCGCCGCACCCAAATTATCGGCTATTTAAAGAGAAGAGGGGGGGGGGTCTGGGAGAGAGACGGGGTCTTTTTTCCCGGGGAGAAATTT</canonical>
            <polymorphic>TGATATTATGATAAACAATTCATCAGTTGACTACTCTTTGATATCTTTGAGAGCAACCAAGATAAATTGGCTGAAAGTTATAAGTGAGGGGCCCTTCTAGTAGAGGTTTTTCAGTATTATTCTGAATTGAACTTCTTGAATTTTTTGAGAGAAAATTGAGAATTTTCAAAGAAAGATCTGGTTTTGGTAACTAACCCAAGAAAAATTTAGAAATTGATCACATGTAGCATTTTATCGGTCAAAAACTATTGAAATTTCACTGAATATCGGCTGAAAATGAATGAAAATTGGTTAAAAATCGAAAACTTTGAATTTTTGAATTTTCGGATTTTCCACTTTCTTGAAAATTCGATATTTGCCGAATTTTCAATTTTCTGGATTTCTGTATTGTTGAAGATTCGAAACACCGTAGCCAATTTCAGGCCTAGCTAGTTCTTAAATTCAAATATCAAAACGTTTGTACTAAACAATAGGAAACAAAAAAAGGAACATCTTTTTCMCAGACCCAACTGAACGACTCAAAATGAAGCCATCCTCCATTTTTCCATCGTCAGCTTAAAGCTGCGCAGCTTATACCTCCTCATTTCGCCAACACCCCATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTGCCGCCTTTCACCAAAAAAAGTTATCGCTGGGGGGTCGGAAGATGTCGCAGCGTTTCTTCCGCAATTCGCCGCACCCAAATTATCGGCTATTTAAAGAGAAGAGGGGGGGGGGTCTGGGAGAGAGACGGGGTCTTTTTTCCCGGGGAGAAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>134 97 94 94 86 80 76 71 63 62 39 36 36 26 4 2</canonical_bands>
                <polymorphic_bands>188 134 97 86 80 76 71 63 62 39 36 36 26 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGCCTAGCTAGTTCTTAAATTC</pcr_primer_p1>
		<pcr_primer_p2>AATCATGTCTTGTACTGAAATACG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AGGCCTAGCTAGTTCTTAAATTCAAATATCAAAACGTTTGTACTAAACAATAGGAAACAAAAAAAGGAACATCTTTTTCACAGACCCAACTGAACGACTCAAAATGAAGCCATCCTCCATTTTTCCATCGTCAGCTTAAAGCTGCGCAGCTTATACCTCCTCATTTCGCCAACACCCCATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATT</canonical_amplicon>
		<polymorphic_amplicon>AGGCCTAGCTAGTTCTTAAATTCAAATATCAAAACGTTTGTACTAAACAATAGGAAACAAAAAAAGGAACATCTTTTTCMCAGACCCAACTGAACGACTCAAAATGAAGCCATCCTCCATTTTTCCATCGTCAGCTTAAAGCTGCGCAGCTTATACCTCCTCATTTCGCCAACACCCCATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37885</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>633747</contig_pos>
        <strand>+</strand>
        <context>ATTTGTTCTC[C/T]TTTTTTTCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACACCCCATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTC</left_flank>
        <right_flank>TTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGAGAGAAAATTGAGAATTTTCAAAGAAAGATCTGGTTTTGGTAACTAACCCAAGAAAAATTTAGAAATTGATCACATGTAGCATTTTATCGGTCAAAAACTATTGAAATTTCACTGAATATCGGCTGAAAATGAATGAAAATTGGTTAAAAATCGAAAACTTTGAATTTTTGAATTTTCGGATTTTCCACTTTCTTGAAAATTCGATATTTGCCGAATTTTCAATTTTCTGGATTTCTGTATTGTTGAAGATTCGAAACACCGTAGCCAATTTCAGGCCTAGCTAGTTCTTAAATTCAAATATCAAAACGTTTGTACTAAACAATAGGAAACAAAAAAAGGAACATCTTTTTCACAGACCCAACTGAACGACTCAAAATGAAGCCATCCTCCATTTTTCCATCGTCAGCTTAAAGCTGCGCAGCTTATACCTCCTCATTTCGCCAACACCCCATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTGCCGCCTTTCACCAAAAAAAGTTATCGCTGGGGGGTCGGAAGATGTCGCAGCGTTTCTTCCGCAATTCGCCGCACCCAAATTATCGGCTATTTAAAGAGAAGAGGGGGGGGGGTCTGGGAGAGAGACGGGGTCTTTTTTCCCGGGGAGAAATTTTTGCAGTGCTGGAGGGCACACTTGTCAAAAAAAATTGTTGTATGTGCTCCTCTCCCGGAATTGTACATAGAAAAAGAGTTGCATGATTTATGACAACGATCTTGGCTTGAATATGCTGGTGCAAAACTCGTAAATGCACTG</canonical>
            <polymorphic>TTTTTGAGAGAAAATTGAGAATTTTCAAAGAAAGATCTGGTTTTGGTAACTAACCCAAGAAAAATTTAGAAATTGATCACATGTAGCATTTTATCGGTCAAAAACTATTGAAATTTCACTGAATATCGGCTGAAAATGAATGAAAATTGGTTAAAAATCGAAAACTTTGAATTTTTGAATTTTCGGATTTTCCACTTTCTTGAAAATTCGATATTTGCCGAATTTTCAATTTTCTGGATTTCTGTATTGTTGAAGATTCGAAACACCGTAGCCAATTTCAGGCCTAGCTAGTTCTTAAATTCAAATATCAAAACGTTTGTACTAAACAATAGGAAACAAAAAAAGGAACATCTTTTTCACAGACCCAACTGAACGACTCAAAATGAAGCCATCCTCCATTTTTCCATCGTCAGCTTAAAGCTGCGCAGCTTATACCTCCTCATTTCGCCAACACCCCATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCYTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTGCCGCCTTTCACCAAAAAAAGTTATCGCTGGGGGGTCGGAAGATGTCGCAGCGTTTCTTCCGCAATTCGCCGCACCCAAATTATCGGCTATTTAAAGAGAAGAGGGGGGGGGGTCTGGGAGAGAGACGGGGTCTTTTTTCCCGGGGAGAAATTTTTGCAGTGCTGGAGGGCACACTTGTCAAAAAAAATTGTTGTATGTGCTCCTCTCCCGGAATTGTACATAGAAAAAGAGTTGCATGATTTATGACAACGATCTTGGCTTGAATATGCTGGTGCAAAACTCGTAAATGCACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGCTTATACCTCCTCATTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAGCTCTCAAGGTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GCAGCTTATACCTCCTCATTTCGCCAACACCCCATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTC</canonical_amplicon>
		<polymorphic_amplicon>GCAGCTTATACCTCCTCATTTCGCCAACACCCCATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCYTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37886</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>633817</contig_pos>
        <strand>+</strand>
        <context>GCGMCCAGAG[A/G]AAAAAAATAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAG</left_flank>
        <right_flank>AAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGATCACATGTAGCATTTTATCGGTCAAAAACTATTGAAATTTCACTGAATATCGGCTGAAAATGAATGAAAATTGGTTAAAAATCGAAAACTTTGAATTTTTGAATTTTCGGATTTTCCACTTTCTTGAAAATTCGATATTTGCCGAATTTTCAATTTTCTGGATTTCTGTATTGTTGAAGATTCGAAACACCGTAGCCAATTTCAGGCCTAGCTAGTTCTTAAATTCAAATATCAAAACGTTTGTACTAAACAATAGGAAACAAAAAAAGGAACATCTTTTTCACAGACCCAACTGAACGACTCAAAATGAAGCCATCCTCCATTTTTCCATCGTCAGCTTAAAGCTGCGCAGCTTATACCTCCTCATTTCGCCAACACCCCATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTGCCGCCTTTCACCAAAAAAAGTTATCGCTGGGGGGTCGGAAGATGTCGCAGCGTTTCTTCCGCAATTCGCCGCACCCAAATTATCGGCTATTTAAAGAGAAGAGGGGGGGGGGTCTGGGAGAGAGACGGGGTCTTTTTTCCCGGGGAGAAATTTTTGCAGTGCTGGAGGGCACACTTGTCAAAAAAAATTGTTGTATGTGCTCCTCTCCCGGAATTGTACATAGAAAAAGAGTTGCATGATTTATGACAACGATCTTGGCTTGAATATGCTGGTGCAAAACTCGTAAATGCACTGATTTCACAAAAAAAGGGAACTAGGAACACAGTAGAAAAAAGAACACCCAAGAGAGAGGTTGGGAGCTCTT</canonical>
            <polymorphic>AATTGATCACATGTAGCATTTTATCGGTCAAAAACTATTGAAATTTCACTGAATATCGGCTGAAAATGAATGAAAATTGGTTAAAAATCGAAAACTTTGAATTTTTGAATTTTCGGATTTTCCACTTTCTTGAAAATTCGATATTTGCCGAATTTTCAATTTTCTGGATTTCTGTATTGTTGAAGATTCGAAACACCGTAGCCAATTTCAGGCCTAGCTAGTTCTTAAATTCAAATATCAAAACGTTTGTACTAAACAATAGGAAACAAAAAAAGGAACATCTTTTTCACAGACCCAACTGAACGACTCAAAATGAAGCCATCCTCCATTTTTCCATCGTCAGCTTAAAGCTGCGCAGCTTATACCTCCTCATTTCGCCAACACCCCATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGRAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTGCCGCCTTTCACCAAAAAAAGTTATCGCTGGGGGGTCGGAAGATGTCGCAGCGTTTCTTCCGCAATTCGCCGCACCCAAATTATCGGCTATTTAAAGAGAAGAGGGGGGGGGGTCTGGGAGAGAGACGGGGTCTTTTTTCCCGGGGAGAAATTTTTGCAGTGCTGGAGGGCACACTTGTCAAAAAAAATTGTTGTATGTGCTCCTCTCCCGGAATTGTACATAGAAAAAGAGTTGCATGATTTATGACAACGATCTTGGCTTGAATATGCTGGTGCAAAACTCGTAAATGCACTGATTTCACAAAAAAAGGGAACTAGGAACACAGTAGAAAAAAGAACACCCAAGAGAGAGGTTGGGAGCTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCATATCCGTTCTGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>CAAGAAAGTTAAAGGGTCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTG</canonical_amplicon>
		<polymorphic_amplicon>ATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGRAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37887</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>634056</contig_pos>
        <strand>+</strand>
        <context>AAAGAGAAGA[C/T]GGGGGGGGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCTTCCGCAATTCGCCGCACCCAAATTATCGGCTATTTAAAGAGAAGA</left_flank>
        <right_flank>GGGGGGGGGTCTGGGAGAGAGACGGGGTCTTTTTTCCCGGGGAGAAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACGTTTGTACTAAACAATAGGAAACAAAAAAAGGAACATCTTTTTCACAGACCCAACTGAACGACTCAAAATGAAGCCATCCTCCATTTTTCCATCGTCAGCTTAAAGCTGCGCAGCTTATACCTCCTCATTTCGCCAACACCCCATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTGCCGCCTTTCACCAAAAAAAGTTATCGCTGGGGGGTCGGAAGATGTCGCAGCGTTTCTTCCGCAATTCGCCGCACCCAAATTATCGGCTATTTAAAGAGAAGAGGGGGGGGGGTCTGGGAGAGAGACGGGGTCTTTTTTCCCGGGGAGAAATTTTTGCAGTGCTGGAGGGCACACTTGTCAAAAAAAATTGTTGTATGTGCTCCTCTCCCGGAATTGTACATAGAAAAAGAGTTGCATGATTTATGACAACGATCTTGGCTTGAATATGCTGGTGCAAAACTCGTAAATGCACTGATTTCACAAAAAAAGGGAACTAGGAACACAGTAGAAAAAAGAACACCCAAGAGAGAGGTTGGGAGCTCTTTGTAGAATTTATGGGTCGCGATGATTTTGTGTGTGATTGCACTCTAGAGATTTATGTCCCTTATATTTTCTCATGTATATGTAGACATGATATTTTAGTCAAGGGAATAATAGGAGGAAGATAATTCAATTATTCTTCTGTTCCTCCGAATTGATGTCACCACTTTTTTGCGGGGTTTTTTGGATGTGGTGAATAGATCAAAGAAGAGGGAAAAGGAAAAAAAAAACTGCATCGAACGT</canonical>
            <polymorphic>AAAACGTTTGTACTAAACAATAGGAAACAAAAAAAGGAACATCTTTTTCACAGACCCAACTGAACGACTCAAAATGAAGCCATCCTCCATTTTTCCATCGTCAGCTTAAAGCTGCGCAGCTTATACCTCCTCATTTCGCCAACACCCCATCCATATCCGTTCTGTTTTCCCCTTTCTGTGATTTGTTCTCTTTTTTTTCGTATTTCAGTACAAGACATGATTTATTGAAAGATGCATCTCCACGAAATTAGCGCCCAGAGAAAAAAAATACGAGGGCACAAGCTAAAAGTCATTTATTAATGTGTGAGCACAGTTTGGGGATGGTTGTAGAACGAAAAAAGACCTTGAGAGCTTTCCCATATTTTTTTACGCTGGCTCTGACCCTTTAACTTTCTTGCCGCCTTTCACCAAAAAAAGTTATCGCTGGGGGGTCGGAAGATGTCGCAGCGTTTCTTCCGCAATTCGCCGCACCCAAATTATCGGCTATTTAAAGAGAAGAYGGGGGGGGGTCTGGGAGAGAGACGGGGTCTTTTTTCCCGGGGAGAAATTTTTGCAGTGCTGGAGGGCACACTTGTCAAAAAAAATTGTTGTATGTGCTCCTCTCCCGGAATTGTACATAGAAAAAGAGTTGCATGATTTATGACAACGATCTTGGCTTGAATATGCTGGTGCAAAACTCGTAAATGCACTGATTTCACAAAAAAAGGGAACTAGGAACACAGTAGAAAAAAGAACACCCAAGAGAGAGGTTGGGAGCTCTTTGTAGAATTTATGGGTCGCGATGATTTTGTGTGTGATTGCACTCTAGAGATTTATGTCCCTTATATTTTCTCATGTATATGTAGACATGATATTTTAGTCAAGGGAATAATAGGAGGAAGATAATTCAATTATTCTTCTGTTCCTCCGAATTGATGTCACCACTTTTTTGCGGGGTTTTTTGGATGTGGTGAATAGATCAAAGAAGAGGGAAAAGGAAAAAAAAAACTGCATCGAACGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTGACCCTTTAACTTTCTTG</pcr_primer_p1>
		<pcr_primer_p2>CTATGTACAATTCCGGGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CTCTGACCCTTTAACTTTCTTGCCGCCTTTCACCAAAAAAAGTTATCGCTGGGGGGTCGGAAGATGTCGCAGCGTTTCTTCCGCAATTCGCCGCACCCAAATTATCGGCTATTTAAAGAGAAGAGGGGGGGGGGTCTGGGAGAGAGACGGGGTCTTTTTTCCCGGGGAGAAATTTTTGCAGTGCTGGAGGGCACACTTGTCAAAAAAAATTGTTGTATGTGCTCCTCTCCCGGAATTGTACATAG</canonical_amplicon>
		<polymorphic_amplicon>CTCTGACCCTTTAACTTTCTTGCCGCCTTTCACCAAAAAAAGTTATCGCTGGGGGGTCGGAAGATGTCGCAGCGTTTCTTCCGCAATTCGCCGCACCCAAATTATCGGCTATTTAAAGAGAAGAYGGGGGGGGGTCTGGGAGAGAGACGGGGTCTTTTTTCCCGGGGAGAAATTTTTGCAGTGCTGGAGGGCACACTTGTCAAAAAAAATTGTTGTATGTGCTCCTCTCCCGGAATTGTACATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37888</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>735621</contig_pos>
        <strand>+</strand>
        <context>GACCAGGCAT[A/T]TCAATCAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCTGATTAAGACTGTCGACAAATAAGTCATTGACCTCCCGACCAGGCAT</left_flank>
        <right_flank>TCAATCAAAAAATGGCTAATGTCACTACAAAGCATAGTTGCAAAATTTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACACATGCCTACTCCTCTTTTCCTTTCACCCACAAAACTCGAGCATTTTTTTATTCTTTTTAGAAGTTCTCTTGGTGTAGCCCATCCTGTGTTTCAAAACTTTCCAAAATAGCTTTTTTACTAAAATTTCCTCCCGATATAGTTTTTATGTCTAGCGTCCTTTTCCCGTGAATCCCAGCATTTTCTTCGGATAATTAGGCTTCAAGCCCTGAACGCGTCTCACCCCCGGAATCACTCATCCCCAAAATCATCTCGCCCTCTGAATTCCAGTTGCCTTAGAATGCCTTAGAATCAAAAACCACGTCCCAGTGAACTCAAACCACAAGAACTTTGAACATTTCCCCATCCCCAAATATCAATCTTCATAGTTTTAAAAAAACTTTTCTGTCAAATAAATGTTTACGGGGATTTATTTTTTGGAACAATTAAAAGCTAGAATTCGACTCGAACCTGATTAAGACTGTCGACAAATAAGTCATTGACCTCCCGACCAGGCATCTCAATCAAAAAATGGCTAATGTCACTACAAAGCATAGTTGCAAAATTTCGGGCCAGCCCGTCGAGAATATCGGCGGGCCGGGCCGGCCCGGGGTACGTACAGACGCTGATTTTTTTTTTGATTTTTTTCGAAAATTTTGAAATTTTTTCGAAAATTTTGAGAAAAAATACCTATTTTTCTGTGTTAGGCGGGCCGAGAAAAATCGTCAACCGGCCCGGTCAGGCCCGGCCTTTTGAAACTATGCTACATAGCACTGGGAAATGGATCGATATTGGCTACACCATATTCTGACTCGATAGCGAAAACATCAATATGTGGGCGGAGCTGGTCGTTCTACAATTTTCTGACTCCTGAAAACGCTTTTTTTATGAGAAAAGTTCAACATTCGCATCTGTCTGATTACTAAGGTTACAAGGGTAATTGAGATACTTAATTAAGAATGGAAAAGCTTTGACAGAATTTTGCATTAATAAGAAATTGAATGATTTCTTTAGAATTTA</canonical>
            <polymorphic>AACACATGCCTACTCCTCTTTTCCTTTCACCCACAAAACTCGAGCATTTTTTTATTCTTTTTAGAAGTTCTCTTGGTGTAGCCCATCCTGTGTTTCAAAACTTTCCAAAATAGCTTTTTTACTAAAATTTCCTCCCGATATAGTTTTTATGTCTAGCGTCCTTTTCCCGTGAATCCCAGCATTTTCTTCGGATAATTAGGCTTCAAGCCCTGAACGCGTCTCACCCCCGGAATCACTCATCCCCAAAATCATCTCGCCCTCTGAATTCCAGTTGCCTTAGAATGCCTTAGAATCAAAAACCACGTCCCAGTGAACTCAAACCACAAGAACTTTGAACATTTCCCCATCCCCAAATATCAATCTTCATAGTTTTAAAAAAACTTTTCTGTCAAATAAATGTTTACGGGGATTTATTTTTTGGAACAATTAAAAGCTAGAATTCGACTCGAACCTGATTAAGACTGTCGACAAATAAGTCATTGACCTCCCGACCAGGCATWTCAATCAAAAAATGGCTAATGTCACTACAAAGCATAGTTGCAAAATTTCGGGCCAGCCCGTCGAGAATATCGGCGGGCCGGGCCGGCCCGGGGTACGTACAGACGCTGATTTTTTTTTTGATTTTTTTCGAAAATTTTGAAATTTTTTCGAAAATTTTGAGAAAAAATACCTATTTTTCTGTGTTAGGCGGGCCGAGAAAAATCGTCAACCGGCCCGGTCAGGCCCGGCCTTTTGAAACTATGCTACATAGCACTGGGAAATGGATCGATATTGGCTACACCATATTCTGACTCGATAGCGAAAACATCAATATGTGGGCGGAGCTGGTCGTTCTACAATTTTCTGACTCCTGAAAACGCTTTTTTTATGAGAAAAGTTCAACATTCGCATCTGTCTGATTACTAAGGTTACAAGGGTAATTGAGATACTTAATTAAGAATGGAAAAGCTTTGACAGAATTTTGCATTAATAAGAAATTGAATGATTTCTTTAGAATTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCGAACCTGATTAAGACTGT</pcr_primer_p1>
		<pcr_primer_p2>CCATTTCCCAGTGCTATGTA</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>ACTCGAACCTGATTAAGACTGTCGACAAATAAGTCATTGACCTCCCGACCAGGCATCTCAATCAAAAAATGGCTAATGTCACTACAAAGCATAGTTGCAAAATTTCGGGCCAGCCCGTCGAGAATATCGGCGGGCCGGGCCGGCCCGGGGTACGTACAGACGCTGATTTTTTTTTTGATTTTTTTCGAAAATTTTGAAATTTTTTCGAAAATTTTGAGAAAAAATACCTATTTTTCTGTGTTAGGCGGGCCGAGAAAAATCGTCAACCGGCCCGGTCAGGCCCGGCCTTTTGAAACTATGCTACATAGCACTGGGAAATGG</canonical_amplicon>
		<polymorphic_amplicon>ACTCGAACCTGATTAAGACTGTCGACAAATAAGTCATTGACCTCCCGACCAGGCATWTCAATCAAAAAATGGCTAATGTCACTACAAAGCATAGTTGCAAAATTTCGGGCCAGCCCGTCGAGAATATCGGCGGGCCGGGCCGGCCCGGGGTACGTACAGACGCTGATTTTTTTTTTGATTTTTTTCGAAAATTTTGAAATTTTTTCGAAAATTTTGAGAAAAAATACCTATTTTTCTGTGTTAGGCGGGCCGAGAAAAATCGTCAACCGGCCCGGTCAGGCCCGGCCTTTTGAAACTATGCTACATAGCACTGGGAAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37889</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>839627</contig_pos>
        <strand>+</strand>
        <context>GAAACGAACA[A/G]AAATGAGTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCATTAGTTTTGAGATAGAGGACATTTTCTCTTGATGAAGAAACGAACA</left_flank>
        <right_flank>AAATGAGTGTTGGAAGAAAAAAAGAAAAGGATATTTGGAGGGAATGGATA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAATAAAATGTTGTTGATAAATTAATGAATAATTTTGCAGTTAACAAGATCCTGATATCTCGCACAGAAATTGAAATGATTGAGCTCAAAATTGACAGATTGTATGAGCTTCTATGAAGGAAATACGAATAGTTGGCTTATCAGTAATAAAAAAATAAATTTCTAAGTCTAGCTTTAATTGTATATCGTTCTTATCATCTACTCAGCTCTAATTATCTATTGTAAAAGCTACTGAAATTCTCTTCTTCTTTTCTACACCCATAAAAGTTCACTAAATTCTCTTATTCTGACTAATCGCATACTGACTAATCATGAATCATAACCAAAGTCTCTCCTGTCATGGGTAAACTTGATTCTCCCTCCCTTTCTAACTCATTCATCACGTTTTGGTTCCCGTTCTGAATGTGAGGCCGTCATCTCCTCCCCTCTCATCCCCACCCATCATGAAGCATTAGTTTTGAGATAGAGGACATTTTCTCTTGATGAAGAAACGAACAGAAATGAGTGTTGGAAGAAAAAAAGAAAAGGATATTTGGAGGGAATGGATAAAGGTTTATGTTTCGTTTTCTGCAGTGGTCATCATCTCAACCACTGACAAGAACAGAAAAAATGAAAAACATACAAACCTCTCAGAGAAACGCACTGTTTGAAAATAACACTAAAACAATAAGTTTGGAGAGAGAGAGAGAGAGAGAGGAGCTGCTGCCTTTTTGTCCGTTCTCGGGTGTTTGCGATTTGGAGCAACAGAGAAAAAAACTGATAACAAATGACCAGAGCGGAAAAGGTAATTATGACGAGGACGTGGAGAGTCATAGAGTATTGAAAATTGTTTTCTAATACATAATTGTAAAATTTGGAAGAAAATTTGAATATTTACACACTACCAAAAGTGAGTAGTGGTCTGATAAAAGTATGCGTGGGAGGCGGTTCTCAACTATGCAACGCAGATCTTCAGAAGATACCGAGCGCGGAAAACGCAAGAACTGAAGAACAACAGT</canonical>
            <polymorphic>ATTAATAAAATGTTGTTGATAAATTAATGAATAATTTTGCAGTTAACAAGATCCTGATATCTCGCACAGAAATTGAAATGATTGAGCTCAAAATTGACAGATTGTATGAGCTTCTATGAAGGAAATACGAATAGTTGGCTTATCAGTAATAAAAAAATAAATTTCTAAGTCTAGCTTTAATTGTATATCGTTCTTATCATCTACTCAGCTCTAATTATCTATTGTAAAAGCTACTGAAATTCTCTTCTTCTTTTCTACACCCATAAAAGTTCACTAAATTCTCTTATTCTGACTAATCGCATACTGACTAATCATGAATCATAACCAAAGTCTCTCCTGTCATGGGTAAACTTGATTCTCCCTCCCTTTCTAACTCATTCATCACGTTTTGGTTCCCGTTCTGAATGTGAGGCCGTCATCTCCTCCCCTCTCATCCCCACCCATCATGAAGCATTAGTTTTGAGATAGAGGACATTTTCTCTTGATGAAGAAACGAACARAAATGAGTGTTGGAAGAAAAAAAGAAAAGGATATTTGGAGGGAATGGATAAAGGTTTATGTTTCGTTTTCTGCAGTGGTCATCATCTCAACCACTGACAAGAACAGAAAAAATGAAAAACATACAAACCTCTCAGAGAAACGCACTGTTTGAAAATAACACTAAAACAATAAGTTTGGAGAGAGAGAGAGAGAGAGAGGAGCTGCTGCCTTTTTGTCCGTTCTCGGGTGTTTGCGATTTGGAGCAACAGAGAAAAAAACTGATAACAAATGACCAGAGCGGAAAAGGTAATTATGACGAGGACGTGGAGAGTCATAGAGTATTGAAAATTGTTTTCTAATACATAATTGTAAAATTTGGAAGAAAATTTGAATATTTACACACTACCAAAAGTGAGTAGTGGTCTGATAAAAGTATGCGTGGGAGGCGGTTCTCAACTATGCAACGCAGATCTTCAGAAGATACCGAGCGCGGAAAACGCAAGAACTGAAGAACAACAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACCAAAGTCTCTCCTGTCAT</pcr_primer_p1>
		<pcr_primer_p2>CAGAAAACGAAACATAAACCTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAACCAAAGTCTCTCCTGTCATGGGTAAACTTGATTCTCCCTCCCTTTCTAACTCATTCATCACGTTTTGGTTCCCGTTCTGAATGTGAGGCCGTCATCTCCTCCCCTCTCATCCCCACCCATCATGAAGCATTAGTTTTGAGATAGAGGACATTTTCTCTTGATGAAGAAACGAACAGAAATGAGTGTTGGAAGAAAAAAAGAAAAGGATATTTGGAGGGAATGGATAAAGGTTTATGTTTCGTTTTCTG</canonical_amplicon>
		<polymorphic_amplicon>TAACCAAAGTCTCTCCTGTCATGGGTAAACTTGATTCTCCCTCCCTTTCTAACTCATTCATCACGTTTTGGTTCCCGTTCTGAATGTGAGGCCGTCATCTCCTCCCCTCTCATCCCCACCCATCATGAAGCATTAGTTTTGAGATAGAGGACATTTTCTCTTGATGAAGAAACGAACARAAATGAGTGTTGGAAGAAAAAAAGAAAAGGATATTTGGAGGGAATGGATAAAGGTTTATGTTTCGTTTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37890</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>840950</contig_pos>
        <strand>+</strand>
        <context>CAAAAAAWCC[A/T]ATTATGAGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAATTGTTCTTATTCACTCAACAATCATTTCGAAACCCCAAAAAAACC</left_flank>
        <right_flank>ATTATGAGTGAATTTATTACAAATTATTGGCTGAACGGTAATCATAAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTCTATAAGATATACAAAAACGTAGTTTTCAGTTAAATTTTGGTCATTTCGACTGTTTTCAAAAGTCTGGAGCTTGGCTGAACAGTTTCCGATCACTTTGAAAATCTTGGAGCGTGTAAATTAGCCCTAGATGGAAAACTTTGCATTTAAAGAATTTCTTCAAACTTCCTAATTTTTCAGCTATACGCCGATTTTCGGAAAACACTTTTTTCATATTTTTAGCACCAAAACGGGCGGGCCATAGTTCAGAATATAGGTCTGCTTTACGCTTTTCAATGTGTTCGAAACGATCAGAAACCTGACGGCCGAGCTCCAGATTTCTTAAAACTATCAAAATGGTGGAAAATTAACTAAAAAAAGTACGTTGTTGTGATTCTTATTGACTGGTACTGTACTTTACCTTAGTGGAATACAAAATGTTTGAATAGGTGAATTGATCTGAAAATTCGAAAATTGTTCTTATTCACTCAACAATCATTTCGAAACCCCAAAAAAACCAATTATGAGTGAATTTATTACAAATTATTGGCTGAACGGTAATCATAAGAATTTCAAAAAAAGTAAAATTGTGAAGAATTTCTCAGAAATGTCATCTGAAGGTCTTAGAGCAAATCGACTATTTTATTCACGAAATTTGGATTTCAAGAACTTTTAGAGTCAAAAATTTCGAAAATTCCAAAAATTCCGAATCAACATGACGTTATCATGTTTTCAACAAAAAATATTTTGACGCTGACAAACAAAACATAACTGTATCAACGGCGATTTTGTATTATTTCCATAATGCGATTGAAAATTTTGTAAATGGTTTATCGGATTACCAACTGTCAACATTAATACTGAACTGTTCAAAATGGGTACTGTAACCGGCACTTTTCTAGCAAAGCTGTGTCGAAAAAATAGTAAGAAAGAAAGCAATCGTGTCAAATAGTGTCTCAATTACACAAGAAAGCGAGCCGAAGAAAAAAAAGTGAGAAAAAGAAAAAGAACTAACATAGA</canonical>
            <polymorphic>AGTCTATAAGATATACAAAAACGTAGTTTTCAGTTAAATTTTGGTCATTTCGACTGTTTTCAAAAGTCTGGAGCTTGGCTGAACAGTTTCCGATCACTTTGAAAATCTTGGAGCGTGTAAATTAGCCCTAGATGGAAAACTTTGCATTTAAAGAATTTCTTCAAACTTCCTAATTTTTCAGCTATACGCCGATTTTCGGAAAACACTTTTTTCATATTTTTAGCACCAAAACGGGCGGGCCATAGTTCAGAATATAGGTCTGCTTTACGCTTTTCAATGTGTTCGAAACGATCAGAAACCTGACGGCCGAGCTCCAGATTTCTTAAAACTATCAAAATGGTGGAAAATTAACTAAAAAAAGTACGTTGTTGTGATTCTTATTGACTGGTACTGTACTTTACCTTAGTGGAATACAAAATGTTTGAATAGGTGAATTGATCTGAAAATTCGAAAATTGTTCTTATTCACTCAACAATCATTTCGAAACCCCAAAAAAACCWATTATGAGTGAATTTATTACAAATTATTGGCTGAACGGTAATCATAAGAATTTCAAAAAAAGTAAAATTGTGAAGAATTTCTCAGAAATGTCATCTGAAGGTCTTAGAGCAAATCGACTATTTTATTCACGAAATTTGGATTTCAAGAACTTTTAGAGTCAAAAATTTCGAAAATTCCAAAAATTCCGAATCAACATGACGTTATCATGTTTTCAACAAAAAATATTTTGACGCTGACAAACAAAACATAACTGTATCAACGGCGATTTTGTATTATTTCCATAATGCGATTGAAAATTTTGTAAATGGTTTATCGGATTACCAACTGTCAACATTAATACTGAACTGTTCAAAATGGGTACTGTAACCGGCACTTTTCTAGCAAAGCTGTGTCGAAAAAATAGTAAGAAAGAAAGCAATCGTGTCAAATAGTGTCTCAATTACACAAGAAAGCGAGCCGAAGAAAAAAAAGTGAGAAAAAGAAAAAGAACTAACATAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>174 143 114 87 83 62 57 47 36 34 31 27 18 17 12 11 11 10 9 9 8</canonical_bands>
                <polymorphic_bands>174 143 114 87 83 62 58 57 36 34 31 27 18 17 12 11 10 9 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATGTTTGAATAGGTGAATTG</pcr_primer_p1>
		<pcr_primer_p2>TTTTGACTCTAAAAGTTCTTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATGTTTGAATAGGTGAATTGATCTGAAAATTCGAAAATTGTTCTTATTCACTCAACAATCATTTCGAAACCCCAAAAAAACCAATTATGAGTGAATTTATTACAAATTATTGGCTGAACGGTAATCATAAGAATTTCAAAAAAAGTAAAATTGTGAAGAATTTCTCAGAAATGTCATCTGAAGGTCTTAGAGCAAATCGACTATTTTATTCACGAAATTTGGATTTCAAGAACTTTTAGAGTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAATGTTTGAATAGGTGAATTGATCTGAAAATTCGAAAATTGTTCTTATTCACTCAACAATCATTTCGAAACCCCAAAAAAACCWATTATGAGTGAATTTATTACAAATTATTGGCTGAACGGTAATCATAAGAATTTCAAAAAAAGTAAAATTGTGAAGAATTTCTCAGAAATGTCATCTGAAGGTCTTAGAGCAAATCGACTATTTTATTCACGAAATTTGGATTTCAAGAACTTTTAGAGTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37891</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>852045</contig_pos>
        <strand>+</strand>
        <context>TTGGAAAATT[C/T]TTATTTCAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAGACAAATTTAATTTAAAAATAACACATTTTCCAACTATTGGAAAATT</left_flank>
        <right_flank>TTATTTCAATAACAATCGAATTCAGGTTTATTTTGTTTACTACTCCACAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAGAGCGTATAAACAACTCTAGATTGACAATATTGTATTTAAATTTCTTTTTAAAAAGGGTGTCGTTGAGTAAATGGCAAATAACTGAAAATCTAGAAATTTTCAAAAAGTTCTATGAATGCAGAGTTTTCGATCTAGGTCTGTTTTAGACCCGCCGAAGTTTTCAAATTGTTCGGAAACTTGACAGCCGAACTCCAAGATCCTGAAACTTGTCAAAATGTACGAAAATCATATACGTTTCGTGTTTCTTATGAACCGACTTATTGTTGAGCTCCAAATTGACACTTCGGGAAAATTCTTAATAAGGGGAATACTGTAGATCAAATTGCAAATGTTCTTCCTACTGGAAATTTACCCAATAGAACAGAATTTATTTTTGGATGATCTGAAAAACAAATTTCTGTTCTACACTAATTATGAACTGTTTGTGTTAATCTTTAAAAGTTCAGAGACAAATTTAATTTAAAAATAACACATTTTCCAACTATTGGAAAATTATTATTTCAATAACAATCGAATTCAGGTTTATTTTGTTTACTACTCCACATCATTTGCTTCCTTTTTTTTCGTATTCCAAAACAAAGCTGGAAAAAACCGAAACCAAACAATTTGCATCATTTTTTGAATCAAATGGTCGTAATAGGTTTTATCGGAGAGATGACAAAGCCCAAAGTTCAAACATCTTCACTTCTCTGCCTTCTCGTCTCTGTTATGTGTCGTCGCCTCGTGTGACAGTATGATACCACCCTTTTCTGATAGTGTAAAAAGAGAAGAAGTCGTCGTGTGTCCCTCACCTAATTCTATTTCGTCGTTTTGTGTTTTTCTTTCGATCCTCTATTATCATATCTTTCTATTTAAACCGGCGCATCTGTCAGTTGTAAACTATCATCTCCACCTCCCCCTTCTCTCTTGTCTCAACTTCCGTATTCAGCCCAATCTTCAAAAGTTCGTCATGCTGTCACAGATATTCCGTCAGATCCTTTTCTTCAACCTGATCG</canonical>
            <polymorphic>TTCAGAGCGTATAAACAACTCTAGATTGACAATATTGTATTTAAATTTCTTTTTAAAAAGGGTGTCGTTGAGTAAATGGCAAATAACTGAAAATCTAGAAATTTTCAAAAAGTTCTATGAATGCAGAGTTTTCGATCTAGGTCTGTTTTAGACCCGCCGAAGTTTTCAAATTGTTCGGAAACTTGACAGCCGAACTCCAAGATCCTGAAACTTGTCAAAATGTACGAAAATCATATACGTTTCGTGTTTCTTATGAACCGACTTATTGTTGAGCTCCAAATTGACACTTCGGGAAAATTCTTAATAAGGGGAATACTGTAGATCAAATTGCAAATGTTCTTCCTACTGGAAATTTACCCAATAGAACAGAATTTATTTTTGGATGATCTGAAAAACAAATTTCTGTTCTACACTAATTATGAACTGTTTGTGTTAATCTTTAAAAGTTCAGAGACAAATTTAATTTAAAAATAACACATTTTCCAACTATTGGAAAATTYTTATTTCAATAACAATCGAATTCAGGTTTATTTTGTTTACTACTCCACATCATTTGCTTCCTTTTTTTTCGTATTCCAAAACAAAGCTGGAAAAAACCGAAACCAAACAATTTGCATCATTTTTTGAATCAAATGGTCGTAATAGGTTTTATCGGAGAGATGACAAAGCCCAAAGTTCAAACATCTTCACTTCTCTGCCTTCTCGTCTCTGTTATGTGTCGTCGCCTCGTGTGACAGTATGATACCACCCTTTTCTGATAGTGTAAAAAGAGAAGAAGTCGTCGTGTGTCCCTCACCTAATTCTATTTCGTCGTTTTGTGTTTTTCTTTCGATCCTCTATTATCATATCTTTCTATTTAAACCGGCGCATCTGTCAGTTGTAAACTATCATCTCCACCTCCCCCTTCTCTCTTGTCTCAACTTCCGTATTCAGCCCAATCTTCAAAAGTTCGTCATGCTGTCACAGATATTCCGTCAGATCCTTTTCTTCAACCTGATCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGGGAATACTGTAGATCAAAT</pcr_primer_p1>
		<pcr_primer_p2>GCAAATGATGTGGAGTAGTAAAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAGGGGAATACTGTAGATCAAATTGCAAATGTTCTTCCTACTGGAAATTTACCCAATAGAACAGAATTTATTTTTGGATGATCTGAAAAACAAATTTCTGTTCTACACTAATTATGAACTGTTTGTGTTAATCTTTAAAAGTTCAGAGACAAATTTAATTTAAAAATAACACATTTTCCAACTATTGGAAAATTATTATTTCAATAACAATCGAATTCAGGTTTATTTTGTTTACTACTCCACATCATTTGC</canonical_amplicon>
		<polymorphic_amplicon>AAGGGGAATACTGTAGATCAAATTGCAAATGTTCTTCCTACTGGAAATTTACCCAATAGAACAGAATTTATTTTTGGATGATCTGAAAAACAAATTTCTGTTCTACACTAATTATGAACTGTTTGTGTTAATCTTTAAAAGTTCAGAGACAAATTTAATTTAAAAATAACACATTTTCCAACTATTGGAAAATTYTTATTTCAATAACAATCGAATTCAGGTTTATTTTGTTTACTACTCCACATCATTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37892</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>858810</contig_pos>
        <strand></strand>
        <context>ATtaaatttt[A/G]taattatcat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCCTTTAATTTTAGTTCTGGGTCAATTAACTTTGGATTTATTAAATTTT</left_flank>
        <right_flank>TAATTATCATAAATATTTCGTACGTTGAAATCTATTTGATAATCTCTACA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAACACCGTTATGATTTTCATTTGTATGACTTTTTACTCACGATAATGGCTGTTCAATTTCAGAAATTGATCAAAAATATCTGAAGAACATTTCGACTATCTTCTCAAAACTTTTACAAACACCGAATACGTTTTTGTTATACTACTGCATAAATTTTACGAAATTATTGAATTTCTATTAATAATATAACAGCAACTGCAGTAAAAAATGAACTGTGAACAAAAGATTTTAGATCTGATTTGAATACTATTCGTTATGATTTTAGCCTTAATTAGAACTTGAAACATCTGAAACTACAGTAAAGTACTCACCAAGAATATTTTGATAGACCACGAAGATTGAAAATTATGTTTGAAATTAGTAAAGAAGTTTAGAATACTCTCTGCTAGTAACCTTGAAAAGAAAAACAGTAAATGTTGTTACCGTAACACTACAAGGATGACCCTCCCCTTTAATTTTAGTTCTGGGTCAATTAACTTTGGATTTATTAAATTTTATAATTATCATAAATATTTCGTACGTTGAAATCTATTTGATAATCTCTACAGAAAATGAGATTTATTGGCTCAAAGTTGACGAACTGGGTGTCCGTACATTGAAAGAAAATAGTATTTTGAATGAACAGCGTGTGATAATAAAGATCATCTGTCGTTTTAAAACCTGACAAATTGCAAAATATGGTCTGCCACGGACAATGGACATGCGACAACTATTACGAGAAAAAGGTACCGTAATCTTAATGTTGGAGCGTTATGAAATAACCGATTTATTAGTGACGAAAATGTTTTCAACGATATTTAGTTATGGGTTAAATTATGAATCAAGCTTGTTTTTCTATTTGCAGTCCATTTTTTTCATTTAACAAGGTTTTTTTTGTTTTTTCTTTAAAACAACCACTACAAAGAATACCCAAAACTAGTAACCTAACTCGAAGACAGAATATTGCGGACCAACTAACCCAAAAACATGGATCATCTGGATAAATAAAAATTAGTTA</canonical>
            <polymorphic>AGGAACACCGTTATGATTTTCATTTGTATGACTTTTTACTCACGATAATGGCTGTTCAATTTCAGAAATTGATCAAAAATATCTGAAGAACATTTCGACTATCTTCTCAAAACTTTTACAAACACCGAATACGTTTTTGTTATACTACTGCATAAATTTTACGAAATTATTGAATTTCTATTAATAATATAACAGCAACTGCAGTAAAAAATGAACTGTGAACAAAAGATTTTAGATCTGATTTGAATACTATTCGTTATGATTTTAGCCTTAATTAGAACTTGAAACATCTGAAACTACAGTAAAGTACTCACCAAGAATATTTTGATAGACCACGAAGATTGAAAATTATGTTTGAAATTAGTAAAGAAGTTTAGAATACTCTCTGCTAGTAACCTTGAAAAGAAAAACAGTAAATGTTGTTACCGTAACACTACAAGGATGACCCTCCCCTTTAATTTTAGTTCTGGGTCAATTAACTTTGGATTTATTAAATTTTRTAATTATCATAAATATTTCGTACGTTGAAATCTATTTGATAATCTCTACAGAAAATGAGATTTATTGGCTCAAAGTTGACGAACTGGGTGTCCGTACATTGAAAGAAAATAGTATTTTGAATGAACAGCGTGTGATAATAAAGATCATCTGTCGTTTTAAAACCTGACAAATTGCAAAATATGGTCTGCCACGGACAATGGACATGCGACAACTATTACGAGAAAAAGGTACCGTAATCTTAATGTTGGAGCGTTATGAAATAACCGATTTATTAGTGACGAAAATGTTTTCAACGATATTTAGTTATGGGTTAAATTATGAATCAAGCTTGTTTTTCTATTTGCAGTCCATTTTTTTCATTTAACAAGGTTTTTTTTGTTTTTTCTTTAAAACAACCACTACAAAGAATACCCAAAACTAGTAACCTAACTCGAAGACAGAATATTGCGGACCAACTAACCCAAAAACATGGATCATCTGGATAAATAAAAATTAGTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCTTGAAAAGAAAAACAGTAAA</pcr_primer_p1>
		<pcr_primer_p2>ATCTTTATTATCACACGCTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACCTTGAAAAGAAAAACAGTAAATGTTGTTACCGTAACACTACAAGGATGACCCTCCCCTTTAATTTTAGTTCTGGGTCAATTAACTTTGGATTTATTAAATTTTATAATTATCATAAATATTTCGTACGTTGAAATCTATTTGATAATCTCTACAGAAAATGAGATTTATTGGCTCAAAGTTGACGAACTGGGTGTCCGTACATTGAAAGAAAATAGTATTTTGAATGAACAGCGTGTGATAATAAAGAT</canonical_amplicon>
		<polymorphic_amplicon>ACCTTGAAAAGAAAAACAGTAAATGTTGTTACCGTAACACTACAAGGATGACCCTCCCCTTTAATTTTAGTTCTGGGTCAATTAACTTTGGATTTATTAAATTTTRTAATTATCATAAATATTTCGTACGTTGAAATCTATTTGATAATCTCTACAGAAAATGAGATTTATTGGCTCAAAGTTGACGAACTGGGTGTCCGTACATTGAAAGAAAATAGTATTTTGAATGAACAGCGTGTGATAATAAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37893</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>858838</contig_pos>
        <strand></strand>
        <context>tcgtacgttg[A/C]aatctatttg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACTTTGGATTTATTAAATTTTATAATTATCATAAATATTTCGTACGTTG</left_flank>
        <right_flank>AATCTATTTGATAATCTCTACAGAAAATGAGATTTATTGGCTCAAAGTTG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACTTTTTACTCACGATAATGGCTGTTCAATTTCAGAAATTGATCAAAAATATCTGAAGAACATTTCGACTATCTTCTCAAAACTTTTACAAACACCGAATACGTTTTTGTTATACTACTGCATAAATTTTACGAAATTATTGAATTTCTATTAATAATATAACAGCAACTGCAGTAAAAAATGAACTGTGAACAAAAGATTTTAGATCTGATTTGAATACTATTCGTTATGATTTTAGCCTTAATTAGAACTTGAAACATCTGAAACTACAGTAAAGTACTCACCAAGAATATTTTGATAGACCACGAAGATTGAAAATTATGTTTGAAATTAGTAAAGAAGTTTAGAATACTCTCTGCTAGTAACCTTGAAAAGAAAAACAGTAAATGTTGTTACCGTAACACTACAAGGATGACCCTCCCCTTTAATTTTAGTTCTGGGTCAATTAACTTTGGATTTATTAAATTTTATAATTATCATAAATATTTCGTACGTTGAAATCTATTTGATAATCTCTACAGAAAATGAGATTTATTGGCTCAAAGTTGACGAACTGGGTGTCCGTACATTGAAAGAAAATAGTATTTTGAATGAACAGCGTGTGATAATAAAGATCATCTGTCGTTTTAAAACCTGACAAATTGCAAAATATGGTCTGCCACGGACAATGGACATGCGACAACTATTACGAGAAAAAGGTACCGTAATCTTAATGTTGGAGCGTTATGAAATAACCGATTTATTAGTGACGAAAATGTTTTCAACGATATTTAGTTATGGGTTAAATTATGAATCAAGCTTGTTTTTCTATTTGCAGTCCATTTTTTTCATTTAACAAGGTTTTTTTTGTTTTTTCTTTAAAACAACCACTACAAAGAATACCCAAAACTAGTAACCTAACTCGAAGACAGAATATTGCGGACCAACTAACCCAAAAACATGGATCATCTGGATAAATAAAAATTAGTTACAGAACGAATACCAGAGAAATAACCCAG</canonical>
            <polymorphic>TGACTTTTTACTCACGATAATGGCTGTTCAATTTCAGAAATTGATCAAAAATATCTGAAGAACATTTCGACTATCTTCTCAAAACTTTTACAAACACCGAATACGTTTTTGTTATACTACTGCATAAATTTTACGAAATTATTGAATTTCTATTAATAATATAACAGCAACTGCAGTAAAAAATGAACTGTGAACAAAAGATTTTAGATCTGATTTGAATACTATTCGTTATGATTTTAGCCTTAATTAGAACTTGAAACATCTGAAACTACAGTAAAGTACTCACCAAGAATATTTTGATAGACCACGAAGATTGAAAATTATGTTTGAAATTAGTAAAGAAGTTTAGAATACTCTCTGCTAGTAACCTTGAAAAGAAAAACAGTAAATGTTGTTACCGTAACACTACAAGGATGACCCTCCCCTTTAATTTTAGTTCTGGGTCAATTAACTTTGGATTTATTAAATTTTATAATTATCATAAATATTTCGTACGTTGMAATCTATTTGATAATCTCTACAGAAAATGAGATTTATTGGCTCAAAGTTGACGAACTGGGTGTCCGTACATTGAAAGAAAATAGTATTTTGAATGAACAGCGTGTGATAATAAAGATCATCTGTCGTTTTAAAACCTGACAAATTGCAAAATATGGTCTGCCACGGACAATGGACATGCGACAACTATTACGAGAAAAAGGTACCGTAATCTTAATGTTGGAGCGTTATGAAATAACCGATTTATTAGTGACGAAAATGTTTTCAACGATATTTAGTTATGGGTTAAATTATGAATCAAGCTTGTTTTTCTATTTGCAGTCCATTTTTTTCATTTAACAAGGTTTTTTTTGTTTTTTCTTTAAAACAACCACTACAAAGAATACCCAAAACTAGTAACCTAACTCGAAGACAGAATATTGCGGACCAACTAACCCAAAAACATGGATCATCTGGATAAATAAAAATTAGTTACAGAACGAATACCAGAGAAATAACCCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTTGAAAAGAAAAACAGTAAA</pcr_primer_p1>
		<pcr_primer_p2>ATCTTTATTATCACACGCTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACCTTGAAAAGAAAAACAGTAAATGTTGTTACCGTAACACTACAAGGATGACCCTCCCCTTTAATTTTAGTTCTGGGTCAATTAACTTTGGATTTATTAAATTTTATAATTATCATAAATATTTCGTACGTTGAAATCTATTTGATAATCTCTACAGAAAATGAGATTTATTGGCTCAAAGTTGACGAACTGGGTGTCCGTACATTGAAAGAAAATAGTATTTTGAATGAACAGCGTGTGATAATAAAGAT</canonical_amplicon>
		<polymorphic_amplicon>ACCTTGAAAAGAAAAACAGTAAATGTTGTTACCGTAACACTACAAGGATGACCCTCCCCTTTAATTTTAGTTCTGGGTCAATTAACTTTGGATTTATTAAATTTTATAATTATCATAAATATTTCGTACGTTGMAATCTATTTGATAATCTCTACAGAAAATGAGATTTATTGGCTCAAAGTTGACGAACTGGGTGTCCGTACATTGAAAGAAAATAGTATTTTGAATGAACAGCGTGTGATAATAAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37894</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>859054</contig_pos>
        <strand>+</strand>
        <context>GTAATCTTAA[A/T]GTTGGAGCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACAATGGACATGCGACAACTATTACGAGAAAAAGGTACCGTAATCTTAA</left_flank>
        <right_flank>GTTGGAGCGTTATGAAATAACCGATTTATTAGTGACGAAAATGTTTTCAA</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATACTATTCGTTATGATTTTAGCCTTAATTAGAACTTGAAACATCTGAAACTACAGTAAAGTACTCACCAAGAATATTTTGATAGACCACGAAGATTGAAAATTATGTTTGAAATTAGTAAAGAAGTTTAGAATACTCTCTGCTAGTAACCTTGAAAAGAAAAACAGTAAATGTTGTTACCGTAACACTACAAGGATGACCCTCCCCTTTAATTTTAGTTCTGGGTCAATTAACTTTGGATTTATTAAATTTTATAATTATCATAAATATTTCGTACGTTGAAATCTATTTGATAATCTCTACAGAAAATGAGATTTATTGGCTCAAAGTTGACGAACTGGGTGTCCGTACATTGAAAGAAAATAGTATTTTGAATGAACAGCGTGTGATAATAAAGATCATCTGTCGTTTTAAAACCTGACAAATTGCAAAATATGGTCTGCCACGGACAATGGACATGCGACAACTATTACGAGAAAAAGGTACCGTAATCTTAATGTTGGAGCGTTATGAAATAACCGATTTATTAGTGACGAAAATGTTTTCAACGATATTTAGTTATGGGTTAAATTATGAATCAAGCTTGTTTTTCTATTTGCAGTCCATTTTTTTCATTTAACAAGGTTTTTTTTGTTTTTTCTTTAAAACAACCACTACAAAGAATACCCAAAACTAGTAACCTAACTCGAAGACAGAATATTGCGGACCAACTAACCCAAAAACATGGATCATCTGGATAAATAAAAATTAGTTACAGAACGAATACCAGAGAAATAACCCAGAAAGTACTCATCTTCGCTCCAAATGAAATGCAATGAAATACAGTACGACATGCTCAATTTATGCAAATTTGTGAGTAGAGAGCTCCAAACAGCTCCGACCTTCAGAGCACTATGGTTTAATTTCTGATTCTCTAAACATTTCAAACCGACTACTATAGCTTTTCAGTATTCGATTACATTAAAGTGTTCAATACTAAATGACACCGATACCGTGAG</canonical>
            <polymorphic>GAATACTATTCGTTATGATTTTAGCCTTAATTAGAACTTGAAACATCTGAAACTACAGTAAAGTACTCACCAAGAATATTTTGATAGACCACGAAGATTGAAAATTATGTTTGAAATTAGTAAAGAAGTTTAGAATACTCTCTGCTAGTAACCTTGAAAAGAAAAACAGTAAATGTTGTTACCGTAACACTACAAGGATGACCCTCCCCTTTAATTTTAGTTCTGGGTCAATTAACTTTGGATTTATTAAATTTTATAATTATCATAAATATTTCGTACGTTGAAATCTATTTGATAATCTCTACAGAAAATGAGATTTATTGGCTCAAAGTTGACGAACTGGGTGTCCGTACATTGAAAGAAAATAGTATTTTGAATGAACAGCGTGTGATAATAAAGATCATCTGTCGTTTTAAAACCTGACAAATTGCAAAATATGGTCTGCCACGGACAATGGACATGCGACAACTATTACGAGAAAAAGGTACCGTAATCTTAAWGTTGGAGCGTTATGAAATAACCGATTTATTAGTGACGAAAATGTTTTCAACGATATTTAGTTATGGGTTAAATTATGAATCAAGCTTGTTTTTCTATTTGCAGTCCATTTTTTTCATTTAACAAGGTTTTTTTTGTTTTTTCTTTAAAACAACCACTACAAAGAATACCCAAAACTAGTAACCTAACTCGAAGACAGAATATTGCGGACCAACTAACCCAAAAACATGGATCATCTGGATAAATAAAAATTAGTTACAGAACGAATACCAGAGAAATAACCCAGAAAGTACTCATCTTCGCTCCAAATGAAATGCAATGAAATACAGTACGACATGCTCAATTTATGCAAATTTGTGAGTAGAGAGCTCCAAACAGCTCCGACCTTCAGAGCACTATGGTTTAATTTCTGATTCTCTAAACATTTCAAACCGACTACTATAGCTTTTCAGTATTCGATTACATTAAAGTGTTCAATACTAAATGACACCGATACCGTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACAAATTGCAAAATATGGTCT</pcr_primer_p1>
		<pcr_primer_p2>GGGTATTCTTTGTAGTGGTTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GACAAATTGCAAAATATGGTCTGCCACGGACAATGGACATGCGACAACTATTACGAGAAAAAGGTACCGTAATCTTAATGTTGGAGCGTTATGAAATAACCGATTTATTAGTGACGAAAATGTTTTCAACGATATTTAGTTATGGGTTAAATTATGAATCAAGCTTGTTTTTCTATTTGCAGTCCATTTTTTTCATTTAACAAGGTTTTTTTTGTTTTTTCTTTAAAACAACCACTACAAAGAATACCC</canonical_amplicon>
		<polymorphic_amplicon>GACAAATTGCAAAATATGGTCTGCCACGGACAATGGACATGCGACAACTATTACGAGAAAAAGGTACCGTAATCTTAAWGTTGGAGCGTTATGAAATAACCGATTTATTAGTGACGAAAATGTTTTCAACGATATTTAGTTATGGGTTAAATTATGAATCAAGCTTGTTTTTCTATTTGCAGTCCATTTTTTTCATTTAACAAGGTTTTTTTTGTTTTTTCTTTAAAACAACCACTACAAAGAATACCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37895</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>860835</contig_pos>
        <strand>+</strand>
        <context>GTAAAACCAW[A/G]ATYMGCTCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAA</left_flank>
        <right_flank>ATTCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACATCATATACTGAACCAGTTTTCAAATTGGGGGGTCGAAACAAATGTTGTGTTGTTCGGTAAGCTATGTCTTCGGTACTTGTATGATGTCAAGTGAATTCGTTTCTTTATTAGGGGAAACGAGGCAATAACATTTCGGAGTTGTTTCGTGTTGAACAACGTTTGTGTTGATCCTTAATCACTTTAGAAGTCAATTGTAGTATTTGTAGGAGAGAATCTCATTTTTAAAAGTAATTGTTTTTCAAATCGCTCAGGTAAACGTGTAGTTCTAAATTACAGTCCTGATTTTGATTCTCCAAAATTAAAACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGTCTACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAAAATTCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGTCAGGCGCATGTAAACAGCAAACTACCGTAACCGTTCCTCTATTTTTTCATTTTTTGAATTTTCATTATTTTAAATCAATTTTTCCGATTCGCATCGAACAAAAATTATCAAAAATGAATACGATATGCGATATATGCTTAAAAATACGGTAATTCTTGCGCCTTTAAATTCTTTTGCACTTTTATATGCGCTTTTCACATGACCGTAATTAAATTCACAACTGGTCTTAATTTTTAATATTCAAAAATATACAAATACCGTATTTCTTCTAATAGAAGCCCACCTCTAATAGAAGCCCACCCCGCAAGGTGCTTCGAAAAATAGAAGCCCACCCTCTAATAGAAGCTCATGGGCGTCTATTAGAGAAAATTCGATGATTAAAAATTTCAGAATTTTTGGAACTGGTATTTTAGAACTTGAAAATTTCTCAATTTCTGATATACAA</canonical>
            <polymorphic>TCACATCATATACTGAACCAGTTTTCAAATTGGGGGGTCGAAACAAATGTTGTGTTGTTCGGTAAGCTATGTCTTCGGTACTTGTATGATGTCAAGTGAATTCGTTTCTTTATTAGGGGAAACGAGGCAATAACATTTCGGAGTTGTTTCGTGTTGAACAACGTTTGTGTTGATCCTTAATCACTTTAGAAGTCAATTGTAGTATTTGTAGGAGAGAATCTCATTTTTAAAAGTAATTGTTTTTCAAATCGCTCAGGTAAACGTGTAGTTCTAAATTACAGTCCTGATTTTGATTCTCCAAAATTAAAACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGTCTACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAARATTCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGTCAGGCGCATGTAAACAGCAAACTACCGTAACCGTTCCTCTATTTTTTCATTTTTTGAATTTTCATTATTTTAAATCAATTTTTCCGATTCGCATCGAACAAAAATTATCAAAAATGAATACGATATGCGATATATGCTTAAAAATACGGTAATTCTTGCGCCTTTAAATTCTTTTGCACTTTTATATGCGCTTTTCACATGACCGTAATTAAATTCACAACTGGTCTTAATTTTTAATATTCAAAAATATACAAATACCGTATTTCTTCTAATAGAAGCCCACCTCTAATAGAAGCCCACCCCGCAAGGTGCTTCGAAAAATAGAAGCCCACCCTCTAATAGAAGCTCATGGGCGTCTATTAGAGAAAATTCGATGATTAAAAATTTCAGAATTTTTGGAACTGGTATTTTAGAACTTGAAAATTTCTCAATTTCTGATATACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>251 156 112 110 98 91 49 45 31 24 15 10 8</canonical_bands>
                <polymorphic_bands>251 161 156 110 98 91 45 31 24 15 10 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>139 96 77 71 48 40 40 39 35 33 31 29 28 27 26 26 25 24 22 20 17 16 16 15 11 10 10 8 8 8 5</canonical_bands>
                <polymorphic_bands>139 96 77 71 60 48 40 40 39 33 31 29 28 27 26 26 24 22 20 17 16 16 15 11 10 10 8 8 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACGTTTAGGTGTATTAATTTTG</pcr_primer_p1>
		<pcr_primer_p2>ACGAGTCCTTAGTTTGTAATTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGTCTACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAAAATTCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGT</canonical_amplicon>
		<polymorphic_amplicon>AAAACGTTTAGGTGTATTAATTTTGAAACTCAACCATTTACTAGAATTTTCGCAAATTGATAACCAATTTGAAAATTGTGATTTTTGAAAAGCTTATTCAAGTATTAATTGTTTTTCAAACACAAACTGTCTACAAATTCGTGAGAATTTTTTTTTGAACACAGTTTTTAATTTCGGGAGTTTTGTAAAACCAARATTCGCTCTATCACCCGTGTCCGTAATGAGTACAAATTACAAACTAAGGACTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37896</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>885963</contig_pos>
        <strand>+</strand>
        <context>GCATCARAAG[A/G]TTCAATTTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGATATGAGTGGCCACGTCTTCAAAACACAGGATATCTAGCATCAAAAG</left_flank>
        <right_flank>TTCAATTTGTAAGGGCGACAGGGTTTCAAAAAGCTTGGTAAGAAATCGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAATCTAGACTTTTTTACACCCTTTACTACTTTTAAAATGATCGGAAACCTGACAGCCGAGCTCCTGTCTTCTGAAAATGATCAAAATATTCGAAAACCGTCGAAAACAAGTTTCTGCATATTCTGTTGACCGCTCCTATTGGTCAAATCCAGGACCCCTTAAGTGTGCCAATACACCATTTTCAAATGAATATCTTTGATAAAAGGATCATCATGTGTGGGCTAAATGTTATCGTCACGGAGATTAGTGACAAAAAGTAGAGAATAACAATATAAATCAATGTTATTACGCGAATTGGGGAAGTCGGGGAGTCACAATGAGATTATTCTTTCCATCCCATGACATTCATTAAAGTCACTGAACTTTTGTTTTTTCATTCCAGGAGCATAATCTCAATGAGCACGGTTACGTCTGCCCAATTTGCCAGCACAAGACAATGATTCAGGGTGATATGAGTGGCCACGTCTTCAAAACACAGGATATCTAGCATCAAAAGATTCAATTTGTAAGGGCGACAGGGTTTCAAAAAGCTTGGTAAGAAATCGCGTCCCGTATAATTTTAAACCGGACAAAACCGCTGGGACGCAATTTCTGACCAAACCTTTTGGAATCCAGTGAGGAGAGATGTGTAGTGATTTTTAAAATGAAAAACAATTTTTGTTCCAGCGTACATCGAGTCTCCTCGCTTGTGGATGCTCTTCAAAGGCGAGTGATACGTCACCACAGCTGCTTCCTTTTTCGGAAATAGCCGATGCTCCTACCACGCCTTCCCTTTGCTCCCCTTTGCTCTTCCATGCTCTTCAATTTCATTTTATTAGATAAGGCCGCATCCCGTATTCTTTTCATCGTCAAGGGGCATCCCCACTCTTGTTCTCTTTGTACCCATTCCTATTTCATTCTCTGCATTTTTCACCAGATTTCTCATTTACTCCCCTCTATCCGATCATTTCTTGTCCCAATCATCATTTCCACTTTATATCAATTTTCCTGCCTACTG</canonical>
            <polymorphic>TTTAATCTAGACTTTTTTACACCCTTTACTACTTTTAAAATGATCGGAAACCTGACAGCCGAGCTCCTGTCTTCTGAAAATGATCAAAATATTCGAAAACCGTCGAAAACAAGTTTCTGCATATTCTGTTGACCGCTCCTATTGGTCAAATCCAGGACCCCTTAAGTGTGCCAATACACCATTTTCAAATGAATATCTTTGATAAAAGGATCATCATGTGTGGGCTAAATGTTATCGTCACGGAGATTAGTGACAAAAAGTAGAGAATAACAATATAAATCAATGTTATTACGCGAATTGGGGAAGTCGGGGAGTCACAATGAGATTATTCTTTCCATCCCATGACATTCATTAAAGTCACTGAACTTTTGTTTTTTCATTCCAGGAGCATAATCTCAATGAGCACGGTTACGTCTGCCCAATTTGCCAGCACAAGACAATGATTCAGGGTGATATGAGTGGCCACGTCTTCAAAACACAGGATATCTAGCATCAAAAGRTTCAATTTGTAAGGGCGACAGGGTTTCAAAAAGCTTGGTAAGAAATCGCGTCCCGTATAATTTTAAACCGGACAAAACCGCTGGGACGCAATTTCTGACCAAACCTTTTGGAATCCAGTGAGGAGAGATGTGTAGTGATTTTTAAAATGAAAAACAATTTTTGTTCCAGCGTACATCGAGTCTCCTCGCTTGTGGATGCTCTTCAAAGGCGAGTGATACGTCACCACAGCTGCTTCCTTTTTCGGAAATAGCCGATGCTCCTACCACGCCTTCCCTTTGCTCCCCTTTGCTCTTCCATGCTCTTCAATTTCATTTTATTAGATAAGGCCGCATCCCGTATTCTTTTCATCGTCAAGGGGCATCCCCACTCTTGTTCTCTTTGTACCCATTCCTATTTCATTCTCTGCATTTTTCACCAGATTTCTCATTTACTCCCCTCTATCCGATCATTTCTTGTCCCAATCATCATTTCCACTTTATATCAATTTTCCTGCCTACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>322 312 130 112 67 57</canonical_bands>
                <polymorphic_bands>322 312 169 130 67</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>442 389 112 57</canonical_bands>
                <polymorphic_bands>442 389 169</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATCTCAATGAGCACGGTTA</pcr_primer_p1>
		<pcr_primer_p2>AATCACTACACATCTCTCCTCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAATCTCAATGAGCACGGTTACGTCTGCCCAATTTGCCAGCACAAGACAATGATTCAGGGTGATATGAGTGGCCACGTCTTCAAAACACAGGATATCTAGCATCAAAAGATTCAATTTGTAAGGGCGACAGGGTTTCAAAAAGCTTGGTAAGAAATCGCGTCCCGTATAATTTTAAACCGGACAAAACCGCTGGGACGCAATTTCTGACCAAACCTTTTGGAATCCAGTGAGGAGAGATGTGTAGTGATT</canonical_amplicon>
		<polymorphic_amplicon>TAATCTCAATGAGCACGGTTACGTCTGCCCAATTTGCCAGCACAAGACAATGATTCAGGGTGATATGAGTGGCCACGTCTTCAAAACACAGGATATCTAGCATCAAAAGRTTCAATTTGTAAGGGCGACAGGGTTTCAAAAAGCTTGGTAAGAAATCGCGTCCCGTATAATTTTAAACCGGACAAAACCGCTGGGACGCAATTTCTGACCAAACCTTTTGGAATCCAGTGAGGAGAGATGTGTAGTGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37897</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>887729</contig_pos>
        <strand>+</strand>
        <context>GAAGAGTTCK[G/T]TTTTTTGCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCGATAAATCAAGCCGGCGGGACACTTGTGGGATGCTTGAGAAGAGTTCG</left_flank>
        <right_flank>TTTTTTGCTCTTTTCCGTCCGTTCAGGAATTTTTTCGCCAGCTTCCTCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGAGCGTTAGAGTGAGAGTGTCTGAGAGCGCGTGTATGTATGTATATGTGCGTCTGGTGGTAAAACTCTATGCACTCTCTGTTTTAACTTACGACACTATCTTGTCGCATTCAGGCGCCACACCAACTCTGCAATGGCTGCGGCTGCGCCAAAGCGGCGTATGGGCCTTGAAAAGGTGGGTGTTCTGTTTTTTTTCTTGTTGTTGTTGTTGTTGTCCTTCTCTTCGTGCTCCTTCTCTCTCATCAATCTTTCTACTCTTGGGGGCTCTGATTCTGCAGCATTGCCGCTCTAATTAGATGACTCATTTGGTTTAATGGGATTGCTTAGAAGAAATGAGCTTTGAGACTTGGTACTTTTTGAGTACATTGTAAAATTTAAAGAACACTTTTGAGACTTTCATGGGAACCCGTTTCATCTTAGATTAGAAATCTTTTCTGGGGATACGTCCCGATAAATCAAGCCGGCGGGACACTTGTGGGATGCTTGAGAAGAGTTCGTTTTTTTGCTCTTTTCCGTCCGTTCAGGAATTTTTTCGCCAGCTTCCTCCTTTTTTTCTCATCCATTTTCCCATTTTTCTGAGAGTTTTCGATTACCTCTTCCTCACCCCGCTCCTTCTCTCACTCCCTCTTTCTCTTTATCCAGAGAATATTTGAAATTGAAGTTTGGGAAAAAAAGTTTTAGAAGCAGAAGAGAGCATTTTTGAGATCAAGAGTTTGAGAGTGGAGACTACATATACTAGTTGGTGGCAATTTAATTTTCCGTCGCTTAGTTTGAGGAAACAGATGCCAAACGTTTCTTAAACGATTATTTATGCCTGAGTGATCAATCGCTTTGCCGCGATTAAAACCTCATGTGTTTTCAGTTTTTGTTGGACTGCGTGATTTTCGCCTCGAAATTTTTTTCTGCCTCCTCTTCTTCCAAGGAACTCGGCTTCCGATGCGATTATGTACTTACTTGTTGCATAGAAAATTTACTGGCTATTCTGACACACACACCCT</canonical>
            <polymorphic>GACGAGCGTTAGAGTGAGAGTGTCTGAGAGCGCGTGTATGTATGTATATGTGCGTCTGGTGGTAAAACTCTATGCACTCTCTGTTTTAACTTACGACACTATCTTGTCGCATTCAGGCGCCACACCAACTCTGCAATGGCTGCGGCTGCGCCAAAGCGGCGTATGGGCCTTGAAAAGGTGGGTGTTCTGTTTTTTTTCTTGTTGTTGTTGTTGTTGTCCTTCTCTTCGTGCTCCTTCTCTCTCATCAATCTTTCTACTCTTGGGGGCTCTGATTCTGCAGCATTGCCGCTCTAATTAGATGACTCATTTGGTTTAATGGGATTGCTTAGAAGAAATGAGCTTTGAGACTTGGTACTTTTTGAGTACATTGTAAAATTTAAAGAACACTTTTGAGACTTTCATGGGAACCCGTTTCATCTTAGATTAGAAATCTTTTCTGGGGATACGTCCCGATAAATCAAGCCGGCGGGACACTTGTGGGATGCTTGAGAAGAGTTCGKTTTTTTGCTCTTTTCCGTCCGTTCAGGAATTTTTTCGCCAGCTTCCTCCTTTTTTTCTCATCCATTTTCCCATTTTTCTGAGAGTTTTCGATTACCTCTTCCTCACCCCGCTCCTTCTCTCACTCCCTCTTTCTCTTTATCCAGAGAATATTTGAAATTGAAGTTTGGGAAAAAAAGTTTTAGAAGCAGAAGAGAGCATTTTTGAGATCAAGAGTTTGAGAGTGGAGACTACATATACTAGTTGGTGGCAATTTAATTTTCCGTCGCTTAGTTTGAGGAAACAGATGCCAAACGTTTCTTAAACGATTATTTATGCCTGAGTGATCAATCGCTTTGCCGCGATTAAAACCTCATGTGTTTTCAGTTTTTGTTGGACTGCGTGATTTTCGCCTCGAAATTTTTTTCTGCCTCCTCTTCTTCCAAGGAACTCGGCTTCCGATGCGATTATGTACTTACTTGTTGCATAGAAAATTTACTGGCTATTCTGACACACACACCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTTTGAGACTTGGTACTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTCTCAGAAAAATGGGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGCTTTGAGACTTGGTACTTTTTGAGTACATTGTAAAATTTAAAGAACACTTTTGAGACTTTCATGGGAACCCGTTTCATCTTAGATTAGAAATCTTTTCTGGGGATACGTCCCGATAAATCAAGCCGGCGGGACACTTGTGGGATGCTTGAGAAGAGTTCGTTTTTTTGCTCTTTTCCGTCCGTTCAGGAATTTTTTCGCCAGCTTCCTCCTTTTTTTCTCATCCATTTTCCCATTTTTCTGAGAGT</canonical_amplicon>
		<polymorphic_amplicon>AGCTTTGAGACTTGGTACTTTTTGAGTACATTGTAAAATTTAAAGAACACTTTTGAGACTTTCATGGGAACCCGTTTCATCTTAGATTAGAAATCTTTTCTGGGGATACGTCCCGATAAATCAAGCCGGCGGGACACTTGTGGGATGCTTGAGAAGAGTTCGKTTTTTTGCTCTTTTCCGTCCGTTCAGGAATTTTTTCGCCAGCTTCCTCCTTTTTTTCTCATCCATTTTCCCATTTTTCTGAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37898</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>889758</contig_pos>
        <strand></strand>
        <context>ctcatatttt[G/A]ttagttgaga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGACTAATTTTCAATTAGTAGATTATTTATCATGATATCACTCATATTTT</left_flank>
        <right_flank>TTAGTTGAGAGATTCTTGATAGCTTTTATAGAAACCGAGATAATTGAGCT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGATAGTCACAATGATCGACCATCCGCACATTGTCAAATGTTATGAGGTACCGTAATCTGGATCAGAAAAATAGGCTGAAGTTCATATTTTCAGATCATGAGGGTTGACAACATGTTATACATTGTAAGCGAATACTGTAGCACGGGAGAGTTATATGGTAGGAATTAAGCTGAAAAATGCAAAATTGATTTGGAAAAATTTTCAGCTACTCTGATGGGAAAAGGTCGTGTGACAGAGGATATTGCTCGAAAATGGTTTACTGAAACGGCAGCTGCAGTGTCCTATCTTCACAATAAAGGAATAGTGCATCGGGATTTGAAAACGGAGAACATTTTATTAGGCAAAGATTCGAAAATCAAATTGATTGGTGAGCCTCGTATCATATTTTATCTAATGGAAGCCCGCTTGCACTTTGAGCTCAATTATCACAGTTTATTCAAGAGACATCGACTAATTTTCAATTAGTAGATTATTTATCATGATATCACTCATATTTTGTTAGTTGAGAGATTCTTGATAGCTTTTATAGAAACCGAGATAATTGAGCTTAAGCGTAGGCTTCTTTTAGATGGGGTATTTTACTTTGGTTGTTGCTAATCTTAAAAATTTCAGATTTTGGGTTTTCAAATTTTCAAACTCCCGATCAACTGCTGAACACATGGTGCGGTTCACCTCCCTATGCGGCACCGGAATTGTTATTAGGTACCTCACTTCTAGGAAACAAGAAAAAAAAATGCATAACCTTTTGCAGGTAACTCGTACGACGGCATGAAAGCTGATATCTGGTCCATGGGTGTGTTGTTATACATTCTCGTGACTGGCGGATTTCCTTTCGGCAGTGAATCAGTAAACGATCTCAAGAGATCCGTTCTCTCTGGCGTCGTTAAGATTCCGTATTGGGTTTCTGTTGGTGAGTGTGACACTTCTCGGGGTGGTGGCAGACCGGAAGACAGATGACGTAATCGTTCTTTCCCTTCTTTTCAGAATGTGCTGATTTC</canonical>
            <polymorphic>AAGATAGTCACAATGATCGACCATCCGCACATTGTCAAATGTTATGAGGTACCGTAATCTGGATCAGAAAAATAGGCTGAAGTTCATATTTTCAGATCATGAGGGTTGACAACATGTTATACATTGTAAGCGAATACTGTAGCACGGGAGAGTTATATGGTAGGAATTAAGCTGAAAAATGCAAAATTGATTTGGAAAAATTTTCAGCTACTCTGATGGGAAAAGGTCGTGTGACAGAGGATATTGCTCGAAAATGGTTTACTGAAACGGCAGCTGCAGTGTCCTATCTTCACAATAAAGGAATAGTGCATCGGGATTTGAAAACGGAGAACATTTTATTAGGCAAAGATTCGAAAATCAAATTGATTGGTGAGCCTCGTATCATATTTTATCTAATGGAAGCCCGCTTGCACTTTGAGCTCAATTATCACAGTTTATTCAAGAGACATCGACTAATTTTCAATTAGTAGATTATTTATCATGATATCACTCATATTTTRTTAGTTGAGAGATTCTTGATAGCTTTTATAGAAACCGAGATAATTGAGCTTAAGCGTAGGCTTCTTTTAGATGGGGTATTTTACTTTGGTTGTTGCTAATCTTAAAAATTTCAGATTTTGGGTTTTCAAATTTTCAAACTCCCGATCAACTGCTGAACACATGGTGCGGTTCACCTCCCTATGCGGCACCGGAATTGTTATTAGGTACCTCACTTCTAGGAAACAAGAAAAAAAAATGCATAACCTTTTGCAGGTAACTCGTACGACGGCATGAAAGCTGATATCTGGTCCATGGGTGTGTTGTTATACATTCTCGTGACTGGCGGATTTCCTTTCGGCAGTGAATCAGTAAACGATCTCAAGAGATCCGTTCTCTCTGGCGTCGTTAAGATTCCGTATTGGGTTTCTGTTGGTGAGTGTGACACTTCTCGGGGTGGTGGCAGACCGGAAGACAGATGACGTAATCGTTCTTTCCCTTCTTTTCAGAATGTGCTGATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGCCTCGTATCATATTTTATC</pcr_primer_p1>
		<pcr_primer_p2>TGAAATTTTTAAGATTAGCAACAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TGAGCCTCGTATCATATTTTATCTAATGGAAGCCCGCTTGCACTTTGAGCTCAATTATCACAGTTTATTCAAGAGACATCGACTAATTTTCAATTAGTAGATTATTTATCATGATATCACTCATATTTTGTTAGTTGAGAGATTCTTGATAGCTTTTATAGAAACCGAGATAATTGAGCTTAAGCGTAGGCTTCTTTTAGATGGGGTATTTTACTTTGGTTGTTGCTAATCTTAAAAATTTCA</canonical_amplicon>
		<polymorphic_amplicon>TGAGCCTCGTATCATATTTTATCTAATGGAAGCCCGCTTGCACTTTGAGCTCAATTATCACAGTTTATTCAAGAGACATCGACTAATTTTCAATTAGTAGATTATTTATCATGATATCACTCATATTTTRTTAGTTGAGAGATTCTTGATAGCTTTTATAGAAACCGAGATAATTGAGCTTAAGCGTAGGCTTCTTTTAGATGGGGTATTTTACTTTGGTTGTTGCTAATCTTAAAAATTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37899</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>889790</contig_pos>
        <strand></strand>
        <context>gcttttatag[A/G]aaccgagata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATATCACTCATATTTTGTTAGTTGAGAGATTCTTGATAGCTTTTATAG</left_flank>
        <right_flank>AACCGAGATAATTGAGCTTAAGCGTAGGCTTCTTTTAGATGGGGTATTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCAAATGTTATGAGGTACCGTAATCTGGATCAGAAAAATAGGCTGAAGTTCATATTTTCAGATCATGAGGGTTGACAACATGTTATACATTGTAAGCGAATACTGTAGCACGGGAGAGTTATATGGTAGGAATTAAGCTGAAAAATGCAAAATTGATTTGGAAAAATTTTCAGCTACTCTGATGGGAAAAGGTCGTGTGACAGAGGATATTGCTCGAAAATGGTTTACTGAAACGGCAGCTGCAGTGTCCTATCTTCACAATAAAGGAATAGTGCATCGGGATTTGAAAACGGAGAACATTTTATTAGGCAAAGATTCGAAAATCAAATTGATTGGTGAGCCTCGTATCATATTTTATCTAATGGAAGCCCGCTTGCACTTTGAGCTCAATTATCACAGTTTATTCAAGAGACATCGACTAATTTTCAATTAGTAGATTATTTATCATGATATCACTCATATTTTGTTAGTTGAGAGATTCTTGATAGCTTTTATAGAAACCGAGATAATTGAGCTTAAGCGTAGGCTTCTTTTAGATGGGGTATTTTACTTTGGTTGTTGCTAATCTTAAAAATTTCAGATTTTGGGTTTTCAAATTTTCAAACTCCCGATCAACTGCTGAACACATGGTGCGGTTCACCTCCCTATGCGGCACCGGAATTGTTATTAGGTACCTCACTTCTAGGAAACAAGAAAAAAAAATGCATAACCTTTTGCAGGTAACTCGTACGACGGCATGAAAGCTGATATCTGGTCCATGGGTGTGTTGTTATACATTCTCGTGACTGGCGGATTTCCTTTCGGCAGTGAATCAGTAAACGATCTCAAGAGATCCGTTCTCTCTGGCGTCGTTAAGATTCCGTATTGGGTTTCTGTTGGTGAGTGTGACACTTCTCGGGGTGGTGGCAGACCGGAAGACAGATGACGTAATCGTTCTTTCCCTTCTTTTCAGAATGTGCTGATTTCATTCGGAAAATGCTCGTGTTGAATCCCACGAA</canonical>
            <polymorphic>TGTCAAATGTTATGAGGTACCGTAATCTGGATCAGAAAAATAGGCTGAAGTTCATATTTTCAGATCATGAGGGTTGACAACATGTTATACATTGTAAGCGAATACTGTAGCACGGGAGAGTTATATGGTAGGAATTAAGCTGAAAAATGCAAAATTGATTTGGAAAAATTTTCAGCTACTCTGATGGGAAAAGGTCGTGTGACAGAGGATATTGCTCGAAAATGGTTTACTGAAACGGCAGCTGCAGTGTCCTATCTTCACAATAAAGGAATAGTGCATCGGGATTTGAAAACGGAGAACATTTTATTAGGCAAAGATTCGAAAATCAAATTGATTGGTGAGCCTCGTATCATATTTTATCTAATGGAAGCCCGCTTGCACTTTGAGCTCAATTATCACAGTTTATTCAAGAGACATCGACTAATTTTCAATTAGTAGATTATTTATCATGATATCACTCATATTTTGTTAGTTGAGAGATTCTTGATAGCTTTTATAGRAACCGAGATAATTGAGCTTAAGCGTAGGCTTCTTTTAGATGGGGTATTTTACTTTGGTTGTTGCTAATCTTAAAAATTTCAGATTTTGGGTTTTCAAATTTTCAAACTCCCGATCAACTGCTGAACACATGGTGCGGTTCACCTCCCTATGCGGCACCGGAATTGTTATTAGGTACCTCACTTCTAGGAAACAAGAAAAAAAAATGCATAACCTTTTGCAGGTAACTCGTACGACGGCATGAAAGCTGATATCTGGTCCATGGGTGTGTTGTTATACATTCTCGTGACTGGCGGATTTCCTTTCGGCAGTGAATCAGTAAACGATCTCAAGAGATCCGTTCTCTCTGGCGTCGTTAAGATTCCGTATTGGGTTTCTGTTGGTGAGTGTGACACTTCTCGGGGTGGTGGCAGACCGGAAGACAGATGACGTAATCGTTCTTTCCCTTCTTTTCAGAATGTGCTGATTTCATTCGGAAAATGCTCGTGTTGAATCCCACGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGCCTCGTATCATATTTTATC</pcr_primer_p1>
		<pcr_primer_p2>TGAAATTTTTAAGATTAGCAACAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TGAGCCTCGTATCATATTTTATCTAATGGAAGCCCGCTTGCACTTTGAGCTCAATTATCACAGTTTATTCAAGAGACATCGACTAATTTTCAATTAGTAGATTATTTATCATGATATCACTCATATTTTGTTAGTTGAGAGATTCTTGATAGCTTTTATAGAAACCGAGATAATTGAGCTTAAGCGTAGGCTTCTTTTAGATGGGGTATTTTACTTTGGTTGTTGCTAATCTTAAAAATTTCA</canonical_amplicon>
		<polymorphic_amplicon>TGAGCCTCGTATCATATTTTATCTAATGGAAGCCCGCTTGCACTTTGAGCTCAATTATCACAGTTTATTCAAGAGACATCGACTAATTTTCAATTAGTAGATTATTTATCATGATATCACTCATATTTTGTTAGTTGAGAGATTCTTGATAGCTTTTATAGRAACCGAGATAATTGAGCTTAAGCGTAGGCTTCTTTTAGATGGGGTATTTTACTTTGGTTGTTGCTAATCTTAAAAATTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37900</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>902193</contig_pos>
        <strand>+</strand>
        <context>ACCTCGGTCT[C/T]CAAGCCTAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAATACGACGAATTTTATTGGTAGGAGAGGGAAAGCGGCGACCTCGGTCT</left_flank>
        <right_flank>CAAGCCTAATCCGAAGAAAAAATTGCATAAAAGTTCATCGAGGTGTGTGT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTGAGTTGCTCATTTTTAGTTCCCAAATCTTAAAAAATTATTTTTCAGAGTACAAGACTCCAGATATGGAGTACCTCGCATTCAACATGGCCGTTCAACGCTTGGTAGACACTGGATATCCAGAGGAAATCTTAAATTTCAAATACGATCCAATTTTCCCAGTTCGTGGTGAGTTTTGCATCAGCCCAGATTCCATTTGTTGCTCACATGTCATTTTGAAATAGTTGACCTGTCTGCCAATCCAATTAAAATGGAATGACAGATCATGCGAAACGCCATAAACTTTTGTATTCTGGTTTAGGGAACAAGATTGCAATCTGAATTTTTTATGGTTGAAACAAAAAAAAACTTCTGCGGGATGTGTGACCGTCATATGTCTAAAAACAGTCGTCGTAAATCTTTATCTTATCGTGAACGACATCTTGCGGTTTTCCTTGACATAGAACTTGAATACGACGAATTTTATTGGTAGGAGAGGGAAAGCGGCGACCTCGGTCTTCAAGCCTAATCCGAAGAAAAAATTGCATAAAAGTTCATCGAGGTGTGTGTAATCTTCATCTAATCGGAGGGTAAGCGGGGTGTAAGATGGTATTAGGGGTGGAAAAGATAGTGGACAAATCGTCTTAAAAAAATACTATTCCCAATTTTTTCTCAGGTCTCTGGTTTGAATTCCAATATGGTAACTTGCTCAAAGTTGATGGATTTGGAAATATTCTTGGTGGAATTCATGGGCTGCGTTTCTTGAAGAAGTATGACTTATAAGTTCACAGAATTATCAAAAACCCACTTTCAGCCATGAAATCGAGGAGATGTACCCGAACAAGTACCTTCCACTCTCCGACTCCCGTGTCTATGTGCTGAACACGTTGTTCAACATGCCAGAAACGCATCTTATCTGTCAGCTTATTGACTTCTTCGACAAGCACGATAACTATTCGCAGTAAGTGAAGTTAGCGCGACGGGAGAACTGCAAAAATTGGAAAATTCCAGGCTCACTGA</canonical>
            <polymorphic>CGTGAGTTGCTCATTTTTAGTTCCCAAATCTTAAAAAATTATTTTTCAGAGTACAAGACTCCAGATATGGAGTACCTCGCATTCAACATGGCCGTTCAACGCTTGGTAGACACTGGATATCCAGAGGAAATCTTAAATTTCAAATACGATCCAATTTTCCCAGTTCGTGGTGAGTTTTGCATCAGCCCAGATTCCATTTGTTGCTCACATGTCATTTTGAAATAGTTGACCTGTCTGCCAATCCAATTAAAATGGAATGACAGATCATGCGAAACGCCATAAACTTTTGTATTCTGGTTTAGGGAACAAGATTGCAATCTGAATTTTTTATGGTTGAAACAAAAAAAAACTTCTGCGGGATGTGTGACCGTCATATGTCTAAAAACAGTCGTCGTAAATCTTTATCTTATCGTGAACGACATCTTGCGGTTTTCCTTGACATAGAACTTGAATACGACGAATTTTATTGGTAGGAGAGGGAAAGCGGCGACCTCGGTCTYCAAGCCTAATCCGAAGAAAAAATTGCATAAAAGTTCATCGAGGTGTGTGTAATCTTCATCTAATCGGAGGGTAAGCGGGGTGTAAGATGGTATTAGGGGTGGAAAAGATAGTGGACAAATCGTCTTAAAAAAATACTATTCCCAATTTTTTCTCAGGTCTCTGGTTTGAATTCCAATATGGTAACTTGCTCAAAGTTGATGGATTTGGAAATATTCTTGGTGGAATTCATGGGCTGCGTTTCTTGAAGAAGTATGACTTATAAGTTCACAGAATTATCAAAAACCCACTTTCAGCCATGAAATCGAGGAGATGTACCCGAACAAGTACCTTCCACTCTCCGACTCCCGTGTCTATGTGCTGAACACGTTGTTCAACATGCCAGAAACGCATCTTATCTGTCAGCTTATTGACTTCTTCGACAAGCACGATAACTATTCGCAGTAAGTGAAGTTAGCGCGACGGGAGAACTGCAAAAATTGGAAAATTCCAGGCTCACTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAAACAGTCGTCGTAAATCTT</pcr_primer_p1>
		<pcr_primer_p2>TTTAAGACGATTTGTCCACTATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAAAACAGTCGTCGTAAATCTTTATCTTATCGTGAACGACATCTTGCGGTTTTCCTTGACATAGAACTTGAATACGACGAATTTTATTGGTAGGAGAGGGAAAGCGGCGACCTCGGTCTTCAAGCCTAATCCGAAGAAAAAATTGCATAAAAGTTCATCGAGGTGTGTGTAATCTTCATCTAATCGGAGGGTAAGCGGGGTGTAAGATGGTATTAGGGGTGGAAAAGATAGTGGACAAATCGTCTTAAA</canonical_amplicon>
		<polymorphic_amplicon>TAAAAACAGTCGTCGTAAATCTTTATCTTATCGTGAACGACATCTTGCGGTTTTCCTTGACATAGAACTTGAATACGACGAATTTTATTGGTAGGAGAGGGAAAGCGGCGACCTCGGTCTYCAAGCCTAATCCGAAGAAAAAATTGCATAAAAGTTCATCGAGGTGTGTGTAATCTTCATCTAATCGGAGGGTAAGCGGGGTGTAAGATGGTATTAGGGGTGGAAAAGATAGTGGACAAATCGTCTTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37901</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>910801</contig_pos>
        <strand>+</strand>
        <context>CACTGCGAAR[A/G]CYYTCACAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAAG</left_flank>
        <right_flank>CCTTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTATCTTATTGACTTGTTTTTCTGTTTTCTTTATTTCCGTTTGAGATTAGTAGTACTGCTTAGGAAGCCTCATGTAATTGAAATCCATACTTTCCCCAAACGACATTCGACTAAAAACTTTGTCAGGGTATCCCATTACCACTGGACATTTTGGATACCAACTTCAACTTTCCTGATATGCGACGTCTTTCGATCGCATCCGCTTCGGCGTTTCTTCTTGTCTTCTCTGTGGATGACGTTACAAGCTTCAAGGAGGTTAGTTACAGTATCCACCGGATTTCCGATCCGCCACCACGGAAATAGACCAAATCAAGCTAATGCGTGAGCAATTTCAGATGTCGGATTTGTGGCAAGAGATTTGCACGCGTCGCTCCGATCTCAACGAGCTGCCAATAGTGGTAGTTGGCAACAAGTGCGACGTGGAGAACAAAAAGGTGAGTGTCGCCCTCCCATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAAGGCCTTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCAAAGGATAATATCCGGATTACTGAGATATTCCGTACCCTGCTCGAGTTGTCCGGATTCCCACGATGCAAAGTGAGCGAGAGAGCGCTGTATAGAAAATATTGGAGGGTTGTTTAGGCTGGAGGCGGTGGATTGGACGATGTCGCTGAGGATGAAGAGACTAAGAATAGTCCCACTATCAGAAGATCGGCTACTGTTCGAGCCAAATCGAGCTCCAAGAGGGAGAGTCGTAGAACTTATCTAGAGGTAGGAGATATGAGCCCTTTATAGGAAAACAGTTGAATATTTGAAAACGTTCAATGTGAATATAATGTATGAGTCAAGAAAATTTAACCACTTTCAGATTATGGGGCTCGGCGGCCAAGTTTGCGATCACTTTGAAAATTTTGGACAGTGCGAAACACACCTAGATTGAAAATGTCTAGTTTTTCAGATATTTAGGGAATTCTAAAA</canonical>
            <polymorphic>TGTATCTTATTGACTTGTTTTTCTGTTTTCTTTATTTCCGTTTGAGATTAGTAGTACTGCTTAGGAAGCCTCATGTAATTGAAATCCATACTTTCCCCAAACGACATTCGACTAAAAACTTTGTCAGGGTATCCCATTACCACTGGACATTTTGGATACCAACTTCAACTTTCCTGATATGCGACGTCTTTCGATCGCATCCGCTTCGGCGTTTCTTCTTGTCTTCTCTGTGGATGACGTTACAAGCTTCAAGGAGGTTAGTTACAGTATCCACCGGATTTCCGATCCGCCACCACGGAAATAGACCAAATCAAGCTAATGCGTGAGCAATTTCAGATGTCGGATTTGTGGCAAGAGATTTGCACGCGTCGCTCCGATCTCAACGAGCTGCCAATAGTGGTAGTTGGCAACAAGTGCGACGTGGAGAACAAAAAGGTGAGTGTCGCCCTCCCATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAAGRCCTTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCAAAGGATAATATCCGGATTACTGAGATATTCCGTACCCTGCTCGAGTTGTCCGGATTCCCACGATGCAAAGTGAGCGAGAGAGCGCTGTATAGAAAATATTGGAGGGTTGTTTAGGCTGGAGGCGGTGGATTGGACGATGTCGCTGAGGATGAAGAGACTAAGAATAGTCCCACTATCAGAAGATCGGCTACTGTTCGAGCCAAATCGAGCTCCAAGAGGGAGAGTCGTAGAACTTATCTAGAGGTAGGAGATATGAGCCCTTTATAGGAAAACAGTTGAATATTTGAAAACGTTCAATGTGAATATAATGTATGAGTCAAGAAAATTTAACCACTTTCAGATTATGGGGCTCGGCGGCCAAGTTTGCGATCACTTTGAAAATTTTGGACAGTGCGAAACACACCTAGATTGAAAATGTCTAGTTTTTCAGATATTTAGGGAATTCTAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGGCCT</site>
                <isoschizomers>
                    <enzyme>AatI</enzyme>
                    <enzyme>Eco147I</enzyme>
                    <enzyme>PceI</enzyme>
                    <enzyme>SseBI</enzyme>
                    <enzyme>StuI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 407 93</canonical_bands>
                <polymorphic_bands>907 93</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>178 155 93 92 72 72 72 69 68 48 41 12 10 10 8</canonical_bands>
                <polymorphic_bands>178 155 93 92 72 72 72 69 68 51 48 12 10 8</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGGAGAACAAAAAGGTGAGT</pcr_primer_p1>
		<pcr_primer_p2>AACAACCCTCCAATATTTTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GTGGAGAACAAAAAGGTGAGTGTCGCCCTCCCATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAAGGCCTTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCAAAGGATAATATCCGGATTACTGAGATATTCCGTACCCTGCTCGAGTTGTCCGGATTCCCACGATGCAAAGTGAGCGAGAGAGCGCTGTATAGAAAATATTGGAGGGTTGTT</canonical_amplicon>
		<polymorphic_amplicon>GTGGAGAACAAAAAGGTGAGTGTCGCCCTCCCATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAAGRCCTTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCAAAGGATAATATCCGGATTACTGAGATATTCCGTACCCTGCTCGAGTTGTCCGGATTCCCACGATGCAAAGTGAGCGAGAGAGCGCTGTATAGAAAATATTGGAGGGTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37902</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>910804</contig_pos>
        <strand>+</strand>
        <context>TGCGAARRCY[C/T]TCACAAGCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAAGGCC</left_flank>
        <right_flank>TCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTTATTGACTTGTTTTTCTGTTTTCTTTATTTCCGTTTGAGATTAGTAGTACTGCTTAGGAAGCCTCATGTAATTGAAATCCATACTTTCCCCAAACGACATTCGACTAAAAACTTTGTCAGGGTATCCCATTACCACTGGACATTTTGGATACCAACTTCAACTTTCCTGATATGCGACGTCTTTCGATCGCATCCGCTTCGGCGTTTCTTCTTGTCTTCTCTGTGGATGACGTTACAAGCTTCAAGGAGGTTAGTTACAGTATCCACCGGATTTCCGATCCGCCACCACGGAAATAGACCAAATCAAGCTAATGCGTGAGCAATTTCAGATGTCGGATTTGTGGCAAGAGATTTGCACGCGTCGCTCCGATCTCAACGAGCTGCCAATAGTGGTAGTTGGCAACAAGTGCGACGTGGAGAACAAAAAGGTGAGTGTCGCCCTCCCATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAAGGCCTTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCAAAGGATAATATCCGGATTACTGAGATATTCCGTACCCTGCTCGAGTTGTCCGGATTCCCACGATGCAAAGTGAGCGAGAGAGCGCTGTATAGAAAATATTGGAGGGTTGTTTAGGCTGGAGGCGGTGGATTGGACGATGTCGCTGAGGATGAAGAGACTAAGAATAGTCCCACTATCAGAAGATCGGCTACTGTTCGAGCCAAATCGAGCTCCAAGAGGGAGAGTCGTAGAACTTATCTAGAGGTAGGAGATATGAGCCCTTTATAGGAAAACAGTTGAATATTTGAAAACGTTCAATGTGAATATAATGTATGAGTCAAGAAAATTTAACCACTTTCAGATTATGGGGCTCGGCGGCCAAGTTTGCGATCACTTTGAAAATTTTGGACAGTGCGAAACACACCTAGATTGAAAATGTCTAGTTTTTCAGATATTTAGGGAATTCTAAAAGAC</canonical>
            <polymorphic>ATCTTATTGACTTGTTTTTCTGTTTTCTTTATTTCCGTTTGAGATTAGTAGTACTGCTTAGGAAGCCTCATGTAATTGAAATCCATACTTTCCCCAAACGACATTCGACTAAAAACTTTGTCAGGGTATCCCATTACCACTGGACATTTTGGATACCAACTTCAACTTTCCTGATATGCGACGTCTTTCGATCGCATCCGCTTCGGCGTTTCTTCTTGTCTTCTCTGTGGATGACGTTACAAGCTTCAAGGAGGTTAGTTACAGTATCCACCGGATTTCCGATCCGCCACCACGGAAATAGACCAAATCAAGCTAATGCGTGAGCAATTTCAGATGTCGGATTTGTGGCAAGAGATTTGCACGCGTCGCTCCGATCTCAACGAGCTGCCAATAGTGGTAGTTGGCAACAAGTGCGACGTGGAGAACAAAAAGGTGAGTGTCGCCCTCCCATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAAGGCCYTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCAAAGGATAATATCCGGATTACTGAGATATTCCGTACCCTGCTCGAGTTGTCCGGATTCCCACGATGCAAAGTGAGCGAGAGAGCGCTGTATAGAAAATATTGGAGGGTTGTTTAGGCTGGAGGCGGTGGATTGGACGATGTCGCTGAGGATGAAGAGACTAAGAATAGTCCCACTATCAGAAGATCGGCTACTGTTCGAGCCAAATCGAGCTCCAAGAGGGAGAGTCGTAGAACTTATCTAGAGGTAGGAGATATGAGCCCTTTATAGGAAAACAGTTGAATATTTGAAAACGTTCAATGTGAATATAATGTATGAGTCAAGAAAATTTAACCACTTTCAGATTATGGGGCTCGGCGGCCAAGTTTGCGATCACTTTGAAAATTTTGGACAGTGCGAAACACACCTAGATTGAAAATGTCTAGTTTTTCAGATATTTAGGGAATTCTAAAAGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGGCCT</site>
                <isoschizomers>
                    <enzyme>AatI</enzyme>
                    <enzyme>Eco147I</enzyme>
                    <enzyme>PceI</enzyme>
                    <enzyme>SseBI</enzyme>
                    <enzyme>StuI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>497 340 163</canonical_bands>
                <polymorphic_bands>837 163</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGGAGAACAAAAAGGTGAGT</pcr_primer_p1>
		<pcr_primer_p2>AACAACCCTCCAATATTTTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GTGGAGAACAAAAAGGTGAGTGTCGCCCTCCCATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAAGGCCTTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCAAAGGATAATATCCGGATTACTGAGATATTCCGTACCCTGCTCGAGTTGTCCGGATTCCCACGATGCAAAGTGAGCGAGAGAGCGCTGTATAGAAAATATTGGAGGGTTGTT</canonical_amplicon>
		<polymorphic_amplicon>GTGGAGAACAAAAAGGTGAGTGTCGCCCTCCCATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAAGGCCYTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCAAAGGATAATATCCGGATTACTGAGATATTCCGTACCCTGCTCGAGTTGTCCGGATTCCCACGATGCAAAGTGAGCGAGAGAGCGCTGTATAGAAAATATTGGAGGGTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37903</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>911116</contig_pos>
        <strand>+</strand>
        <context>GAGCCCTTTA[A/T]AGGAAAACAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAGGGAGAGTCGTAGAACTTATCTAGAGGTAGGAGATATGAGCCCTTTA</left_flank>
        <right_flank>AGGAAAACAGTTGAATATTTGAAAACGTTCAATGTGAATATAATGTATGA</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAATGCGTGAGCAATTTCAGATGTCGGATTTGTGGCAAGAGATTTGCACGCGTCGCTCCGATCTCAACGAGCTGCCAATAGTGGTAGTTGGCAACAAGTGCGACGTGGAGAACAAAAAGGTGAGTGTCGCCCTCCCATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAAGGCCTTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCAAAGGATAATATCCGGATTACTGAGATATTCCGTACCCTGCTCGAGTTGTCCGGATTCCCACGATGCAAAGTGAGCGAGAGAGCGCTGTATAGAAAATATTGGAGGGTTGTTTAGGCTGGAGGCGGTGGATTGGACGATGTCGCTGAGGATGAAGAGACTAAGAATAGTCCCACTATCAGAAGATCGGCTACTGTTCGAGCCAAATCGAGCTCCAAGAGGGAGAGTCGTAGAACTTATCTAGAGGTAGGAGATATGAGCCCTTTATAGGAAAACAGTTGAATATTTGAAAACGTTCAATGTGAATATAATGTATGAGTCAAGAAAATTTAACCACTTTCAGATTATGGGGCTCGGCGGCCAAGTTTGCGATCACTTTGAAAATTTTGGACAGTGCGAAACACACCTAGATTGAAAATGTCTAGTTTTTCAGATATTTAGGGAATTCTAAAAGACACACTCGTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTACAGAATTCCCCAAATAGCTGAGAAACTAGTAATTTTCAAAAACCCCTGTGAGTGCAAAGTTTTCAATCTAGGCCTGTTTTGCATCCTCTAGAGTTTTCAAAGAGATCGGAAATTTGACAAATGAGCTCCAGACTCCTGAAAATGGCCATAATGACCGAAGATTAACTGAAAACACGTTTTTTTGTATATTTTATTGACCGGTACTATTTTGAAGGAACACATGGCAAAATTGTTTCCATTGTTAGGACTTCCTTGTGTTTATGATTTTTTT</canonical>
            <polymorphic>CTAATGCGTGAGCAATTTCAGATGTCGGATTTGTGGCAAGAGATTTGCACGCGTCGCTCCGATCTCAACGAGCTGCCAATAGTGGTAGTTGGCAACAAGTGCGACGTGGAGAACAAAAAGGTGAGTGTCGCCCTCCCATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAAGGCCTTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCAAAGGATAATATCCGGATTACTGAGATATTCCGTACCCTGCTCGAGTTGTCCGGATTCCCACGATGCAAAGTGAGCGAGAGAGCGCTGTATAGAAAATATTGGAGGGTTGTTTAGGCTGGAGGCGGTGGATTGGACGATGTCGCTGAGGATGAAGAGACTAAGAATAGTCCCACTATCAGAAGATCGGCTACTGTTCGAGCCAAATCGAGCTCCAAGAGGGAGAGTCGTAGAACTTATCTAGAGGTAGGAGATATGAGCCCTTTAWAGGAAAACAGTTGAATATTTGAAAACGTTCAATGTGAATATAATGTATGAGTCAAGAAAATTTAACCACTTTCAGATTATGGGGCTCGGCGGCCAAGTTTGCGATCACTTTGAAAATTTTGGACAGTGCGAAACACACCTAGATTGAAAATGTCTAGTTTTTCAGATATTTAGGGAATTCTAAAAGACACACTCGTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTACAGAATTCCCCAAATAGCTGAGAAACTAGTAATTTTCAAAAACCCCTGTGAGTGCAAAGTTTTCAATCTAGGCCTGTTTTGCATCCTCTAGAGTTTTCAAAGAGATCGGAAATTTGACAAATGAGCTCCAGACTCCTGAAAATGGCCATAATGACCGAAGATTAACTGAAAACACGTTTTTTTGTATATTTTATTGACCGGTACTATTTTGAAGGAACACATGGCAAAATTGTTTCCATTGTTAGGACTTCCTTGTGTTTATGATTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAGGGAGAGTCGTAGAACTT</pcr_primer_p1>
		<pcr_primer_p2>AACAATTTTGCCATGTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>515</pcr_amplicon_size>
		<canonical_amplicon>AAGAGGGAGAGTCGTAGAACTTATCTAGAGGTAGGAGATATGAGCCCTTTATAGGAAAACAGTTGAATATTTGAAAACGTTCAATGTGAATATAATGTATGAGTCAAGAAAATTTAACCACTTTCAGATTATGGGGCTCGGCGGCCAAGTTTGCGATCACTTTGAAAATTTTGGACAGTGCGAAACACACCTAGATTGAAAATGTCTAGTTTTTCAGATATTTAGGGAATTCTAAAAGACACACTCGTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTACAGAATTCCCCAAATAGCTGAGAAACTAGTAATTTTCAAAAACCCCTGTGAGTGCAAAGTTTTCAATCTAGGCCTGTTTTGCATCCTCTAGAGTTTTCAAAGAGATCGGAAATTTGACAAATGAGCTCCAGACTCCTGAAAATGGCCATAATGACCGAAGATTAACTGAAAACACGTTTTTTTGTATATTTTATTGACCGGTACTATTTTGAAGGAACACATGGCAAAATTGTT</canonical_amplicon>
		<polymorphic_amplicon>AAGAGGGAGAGTCGTAGAACTTATCTAGAGGTAGGAGATATGAGCCCTTTAWAGGAAAACAGTTGAATATTTGAAAACGTTCAATGTGAATATAATGTATGAGTCAAGAAAATTTAACCACTTTCAGATTATGGGGCTCGGCGGCCAAGTTTGCGATCACTTTGAAAATTTTGGACAGTGCGAAACACACCTAGATTGAAAATGTCTAGTTTTTCAGATATTTAGGGAATTCTAAAAGACACACTCGTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTACAGAATTCCCCAAATAGCTGAGAAACTAGTAATTTTCAAAAACCCCTGTGAGTGCAAAGTTTTCAATCTAGGCCTGTTTTGCATCCTCTAGAGTTTTCAAAGAGATCGGAAATTTGACAAATGAGCTCCAGACTCCTGAAAATGGCCATAATGACCGAAGATTAACTGAAAACACGTTTTTTTGTATATTTTATTGACCGGTACTATTTTGAAGGAACACATGGCAAAATTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37904</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>911142</contig_pos>
        <strand>+</strand>
        <context>TATTTGAAAA[C/T]GTTCAATGTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGGTAGGAGATATGAGCCCTTTATAGGAAAACAGTTGAATATTTGAAAA</left_flank>
        <right_flank>GTTCAATGTGAATATAATGTATGAGTCAAGAAAATTTAACCACTTTCAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATTTGTGGCAAGAGATTTGCACGCGTCGCTCCGATCTCAACGAGCTGCCAATAGTGGTAGTTGGCAACAAGTGCGACGTGGAGAACAAAAAGGTGAGTGTCGCCCTCCCATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAAGGCCTTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCAAAGGATAATATCCGGATTACTGAGATATTCCGTACCCTGCTCGAGTTGTCCGGATTCCCACGATGCAAAGTGAGCGAGAGAGCGCTGTATAGAAAATATTGGAGGGTTGTTTAGGCTGGAGGCGGTGGATTGGACGATGTCGCTGAGGATGAAGAGACTAAGAATAGTCCCACTATCAGAAGATCGGCTACTGTTCGAGCCAAATCGAGCTCCAAGAGGGAGAGTCGTAGAACTTATCTAGAGGTAGGAGATATGAGCCCTTTATAGGAAAACAGTTGAATATTTGAAAACGTTCAATGTGAATATAATGTATGAGTCAAGAAAATTTAACCACTTTCAGATTATGGGGCTCGGCGGCCAAGTTTGCGATCACTTTGAAAATTTTGGACAGTGCGAAACACACCTAGATTGAAAATGTCTAGTTTTTCAGATATTTAGGGAATTCTAAAAGACACACTCGTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTACAGAATTCCCCAAATAGCTGAGAAACTAGTAATTTTCAAAAACCCCTGTGAGTGCAAAGTTTTCAATCTAGGCCTGTTTTGCATCCTCTAGAGTTTTCAAAGAGATCGGAAATTTGACAAATGAGCTCCAGACTCCTGAAAATGGCCATAATGACCGAAGATTAACTGAAAACACGTTTTTTTGTATATTTTATTGACCGGTACTATTTTGAAGGAACACATGGCAAAATTGTTTCCATTGTTAGGACTTCCTTGTGTTTATGATTTTTTTTCACTAAATCAAAATTTCGTAACATT</canonical>
            <polymorphic>GGATTTGTGGCAAGAGATTTGCACGCGTCGCTCCGATCTCAACGAGCTGCCAATAGTGGTAGTTGGCAACAAGTGCGACGTGGAGAACAAAAAGGTGAGTGTCGCCCTCCCATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAAGGCCTTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCAAAGGATAATATCCGGATTACTGAGATATTCCGTACCCTGCTCGAGTTGTCCGGATTCCCACGATGCAAAGTGAGCGAGAGAGCGCTGTATAGAAAATATTGGAGGGTTGTTTAGGCTGGAGGCGGTGGATTGGACGATGTCGCTGAGGATGAAGAGACTAAGAATAGTCCCACTATCAGAAGATCGGCTACTGTTCGAGCCAAATCGAGCTCCAAGAGGGAGAGTCGTAGAACTTATCTAGAGGTAGGAGATATGAGCCCTTTATAGGAAAACAGTTGAATATTTGAAAAYGTTCAATGTGAATATAATGTATGAGTCAAGAAAATTTAACCACTTTCAGATTATGGGGCTCGGCGGCCAAGTTTGCGATCACTTTGAAAATTTTGGACAGTGCGAAACACACCTAGATTGAAAATGTCTAGTTTTTCAGATATTTAGGGAATTCTAAAAGACACACTCGTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTACAGAATTCCCCAAATAGCTGAGAAACTAGTAATTTTCAAAAACCCCTGTGAGTGCAAAGTTTTCAATCTAGGCCTGTTTTGCATCCTCTAGAGTTTTCAAAGAGATCGGAAATTTGACAAATGAGCTCCAGACTCCTGAAAATGGCCATAATGACCGAAGATTAACTGAAAACACGTTTTTTTGTATATTTTATTGACCGGTACTATTTTGAAGGAACACATGGCAAAATTGTTTCCATTGTTAGGACTTCCTTGTGTTTATGATTTTTTTTCACTAAATCAAAATTTCGTAACATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>306 194 184 123 106 78 9</canonical_bands>
                <polymorphic_bands>490 194 123 106 78 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGTAGAACTTATCTAGAGGTAGGA</pcr_primer_p1>
		<pcr_primer_p2>AACAATTTTGCCATGTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>504</pcr_amplicon_size>
		<canonical_amplicon>TCGTAGAACTTATCTAGAGGTAGGAGATATGAGCCCTTTATAGGAAAACAGTTGAATATTTGAAAACGTTCAATGTGAATATAATGTATGAGTCAAGAAAATTTAACCACTTTCAGATTATGGGGCTCGGCGGCCAAGTTTGCGATCACTTTGAAAATTTTGGACAGTGCGAAACACACCTAGATTGAAAATGTCTAGTTTTTCAGATATTTAGGGAATTCTAAAAGACACACTCGTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTACAGAATTCCCCAAATAGCTGAGAAACTAGTAATTTTCAAAAACCCCTGTGAGTGCAAAGTTTTCAATCTAGGCCTGTTTTGCATCCTCTAGAGTTTTCAAAGAGATCGGAAATTTGACAAATGAGCTCCAGACTCCTGAAAATGGCCATAATGACCGAAGATTAACTGAAAACACGTTTTTTTGTATATTTTATTGACCGGTACTATTTTGAAGGAACACATGGCAAAATTGTT</canonical_amplicon>
		<polymorphic_amplicon>TCGTAGAACTTATCTAGAGGTAGGAGATATGAGCCCTTTATAGGAAAACAGTTGAATATTTGAAAAYGTTCAATGTGAATATAATGTATGAGTCAAGAAAATTTAACCACTTTCAGATTATGGGGCTCGGCGGCCAAGTTTGCGATCACTTTGAAAATTTTGGACAGTGCGAAACACACCTAGATTGAAAATGTCTAGTTTTTCAGATATTTAGGGAATTCTAAAAGACACACTCGTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTACAGAATTCCCCAAATAGCTGAGAAACTAGTAATTTTCAAAAACCCCTGTGAGTGCAAAGTTTTCAATCTAGGCCTGTTTTGCATCCTCTAGAGTTTTCAAAGAGATCGGAAATTTGACAAATGAGCTCCAGACTCCTGAAAATGGCCATAATGACCGAAGATTAACTGAAAACACGTTTTTTTGTATATTTTATTGACCGGTACTATTTTGAAGGAACACATGGCAAAATTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37905</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>911177</contig_pos>
        <strand></strand>
        <context>GTCAARAAAA[T/A]ttaaccactt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTGAATATTTGAAAACGTTCAATGTGAATATAATGTATGAGTCAAGAAAA</left_flank>
        <right_flank>TTAACCACTTTCAGATTATGGGGCTCGGCGGCCAAGTTTGCGATCACTTT</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTCAACGAGCTGCCAATAGTGGTAGTTGGCAACAAGTGCGACGTGGAGAACAAAAAGGTGAGTGTCGCCCTCCCATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAAGGCCTTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCAAAGGATAATATCCGGATTACTGAGATATTCCGTACCCTGCTCGAGTTGTCCGGATTCCCACGATGCAAAGTGAGCGAGAGAGCGCTGTATAGAAAATATTGGAGGGTTGTTTAGGCTGGAGGCGGTGGATTGGACGATGTCGCTGAGGATGAAGAGACTAAGAATAGTCCCACTATCAGAAGATCGGCTACTGTTCGAGCCAAATCGAGCTCCAAGAGGGAGAGTCGTAGAACTTATCTAGAGGTAGGAGATATGAGCCCTTTATAGGAAAACAGTTGAATATTTGAAAACGTTCAATGTGAATATAATGTATGAGTCAAGAAAATTTAACCACTTTCAGATTATGGGGCTCGGCGGCCAAGTTTGCGATCACTTTGAAAATTTTGGACAGTGCGAAACACACCTAGATTGAAAATGTCTAGTTTTTCAGATATTTAGGGAATTCTAAAAGACACACTCGTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTACAGAATTCCCCAAATAGCTGAGAAACTAGTAATTTTCAAAAACCCCTGTGAGTGCAAAGTTTTCAATCTAGGCCTGTTTTGCATCCTCTAGAGTTTTCAAAGAGATCGGAAATTTGACAAATGAGCTCCAGACTCCTGAAAATGGCCATAATGACCGAAGATTAACTGAAAACACGTTTTTTTGTATATTTTATTGACCGGTACTATTTTGAAGGAACACATGGCAAAATTGTTTCCATTGTTAGGACTTCCTTGTGTTTATGATTTTTTTTCACTAAATCAAAATTTCGTAACATTCAAGAAGCCTAAATATGATATCACCTGTCTAATCC</canonical>
            <polymorphic>ATCTCAACGAGCTGCCAATAGTGGTAGTTGGCAACAAGTGCGACGTGGAGAACAAAAAGGTGAGTGTCGCCCTCCCATACAAGCTCCCCCAACAGCATTCAGATCTTCGAGGACACTGCGAAGGCCTTCACAAGCCGCTTGTCATCCGACGTGCGATACGTTGAGGTGTCGGCAAAGGATAATATCCGGATTACTGAGATATTCCGTACCCTGCTCGAGTTGTCCGGATTCCCACGATGCAAAGTGAGCGAGAGAGCGCTGTATAGAAAATATTGGAGGGTTGTTTAGGCTGGAGGCGGTGGATTGGACGATGTCGCTGAGGATGAAGAGACTAAGAATAGTCCCACTATCAGAAGATCGGCTACTGTTCGAGCCAAATCGAGCTCCAAGAGGGAGAGTCGTAGAACTTATCTAGAGGTAGGAGATATGAGCCCTTTATAGGAAAACAGTTGAATATTTGAAAACGTTCAATGTGAATATAATGTATGAGTCAAGAAAAWTTAACCACTTTCAGATTATGGGGCTCGGCGGCCAAGTTTGCGATCACTTTGAAAATTTTGGACAGTGCGAAACACACCTAGATTGAAAATGTCTAGTTTTTCAGATATTTAGGGAATTCTAAAAGACACACTCGTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTACAGAATTCCCCAAATAGCTGAGAAACTAGTAATTTTCAAAAACCCCTGTGAGTGCAAAGTTTTCAATCTAGGCCTGTTTTGCATCCTCTAGAGTTTTCAAAGAGATCGGAAATTTGACAAATGAGCTCCAGACTCCTGAAAATGGCCATAATGACCGAAGATTAACTGAAAACACGTTTTTTTGTATATTTTATTGACCGGTACTATTTTGAAGGAACACATGGCAAAATTGTTTCCATTGTTAGGACTTCCTTGTGTTTATGATTTTTTTTCACTAAATCAAAATTTCGTAACATTCAAGAAGCCTAAATATGATATCACCTGTCTAATCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>497 173 107 61 57 56 49</canonical_bands>
                <polymorphic_bands>553 173 107 61 57 49</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>497 117 80 61 57 56 56 49 27</canonical_bands>
                <polymorphic_bands>553 117 80 61 57 56 49 27</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGTAGAACTTATCTAGAGGTAGGA</pcr_primer_p1>
		<pcr_primer_p2>AACAATTTTGCCATGTGTTC</pcr_primer_p2>
		<pcr_amplicon_size>504</pcr_amplicon_size>
		<canonical_amplicon>TCGTAGAACTTATCTAGAGGTAGGAGATATGAGCCCTTTATAGGAAAACAGTTGAATATTTGAAAACGTTCAATGTGAATATAATGTATGAGTCAAGAAAATTTAACCACTTTCAGATTATGGGGCTCGGCGGCCAAGTTTGCGATCACTTTGAAAATTTTGGACAGTGCGAAACACACCTAGATTGAAAATGTCTAGTTTTTCAGATATTTAGGGAATTCTAAAAGACACACTCGTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTACAGAATTCCCCAAATAGCTGAGAAACTAGTAATTTTCAAAAACCCCTGTGAGTGCAAAGTTTTCAATCTAGGCCTGTTTTGCATCCTCTAGAGTTTTCAAAGAGATCGGAAATTTGACAAATGAGCTCCAGACTCCTGAAAATGGCCATAATGACCGAAGATTAACTGAAAACACGTTTTTTTGTATATTTTATTGACCGGTACTATTTTGAAGGAACACATGGCAAAATTGTT</canonical_amplicon>
		<polymorphic_amplicon>TCGTAGAACTTATCTAGAGGTAGGAGATATGAGCCCTTTATAGGAAAACAGTTGAATATTTGAAAACGTTCAATGTGAATATAATGTATGAGTCAAGAAAAWTTAACCACTTTCAGATTATGGGGCTCGGCGGCCAAGTTTGCGATCACTTTGAAAATTTTGGACAGTGCGAAACACACCTAGATTGAAAATGTCTAGTTTTTCAGATATTTAGGGAATTCTAAAAGACACACTCGTTTTGTACTGAAAACGTGAAAAACAGGTGTCTTACAGAATTCCCCAAATAGCTGAGAAACTAGTAATTTTCAAAAACCCCTGTGAGTGCAAAGTTTTCAATCTAGGCCTGTTTTGCATCCTCTAGAGTTTTCAAAGAGATCGGAAATTTGACAAATGAGCTCCAGACTCCTGAAAATGGCCATAATGACCGAAGATTAACTGAAAACACGTTTTTTTGTATATTTTATTGACCGGTACTATTTTGAAGGAACACATGGCAAAATTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37906</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>912656</contig_pos>
        <strand>+</strand>
        <context>AGGTTGGGTT[C/T]TATGGCTTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATGTGTTTGAAACGTTTTAAAATAGAGTTGCAATGTTCAGGTTGGGTT</left_flank>
        <right_flank>TATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTCATGGAGAGAAGAGCAACAAGGAGGAGGTCGTCGACGAGAGTGATTGCAAGATTCAATGAATCACTCGCTTATAACTTCTCTATATTCTATCAATCTCTCACCTTCTCGTTAGAAACTATAATAATCTTGGGATCTCTTTGGACAACCATTTTATTTCTTCTCATATTTTTGGCAAAACAAATTATACAATCGCATGTGATGAATATGTGAATCTAAATTTCAGAATTATTGAATTTTTTTGGGAAAATTTTTTTTTGGAAATAAATATTATATTGGGGAGTTTGGGAGTTTTAAGATGCAAAAAAAAGATAAACGGTTATGAAGGACAGAGGGACTTTTAAAAATGTGTGAGAAATAGTTTCAGGAAAACATGAGAAGCTTAGAAATCAAGAATGAGATTATTATAAACAGATTAGTAGGGTGTAAAGGGACATAATGAAAATTTAATGTGTTTGAAACGTTTTAAAATAGAGTTGCAATGTTCAGGTTGGGTTCTATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGTTTCACGACCTACAGGACACAATTAATACAAACGAAAAGGTTTAAAGGGACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGACGTGAAAAAAAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAAAACAGTAGAAGGTTACCATAGCACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGGTATAAAGGGTAATCGGACTTCAAAGAATCAAAAAATAAGATA</canonical>
            <polymorphic>TCGTCATGGAGAGAAGAGCAACAAGGAGGAGGTCGTCGACGAGAGTGATTGCAAGATTCAATGAATCACTCGCTTATAACTTCTCTATATTCTATCAATCTCTCACCTTCTCGTTAGAAACTATAATAATCTTGGGATCTCTTTGGACAACCATTTTATTTCTTCTCATATTTTTGGCAAAACAAATTATACAATCGCATGTGATGAATATGTGAATCTAAATTTCAGAATTATTGAATTTTTTTGGGAAAATTTTTTTTTGGAAATAAATATTATATTGGGGAGTTTGGGAGTTTTAAGATGCAAAAAAAAGATAAACGGTTATGAAGGACAGAGGGACTTTTAAAAATGTGTGAGAAATAGTTTCAGGAAAACATGAGAAGCTTAGAAATCAAGAATGAGATTATTATAAACAGATTAGTAGGGTGTAAAGGGACATAATGAAAATTTAATGTGTTTGAAACGTTTTAAAATAGAGTTGCAATGTTCAGGTTGGGTTYTATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGTTTCACGACCTACAGGACACAATTAATACAAACGAAAAGGTTTAAAGGGACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGACGTGAAAAAAAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAAAACAGTAGAAGGTTACCATAGCACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGGTATAAAGGGTAATCGGACTTCAAAGAATCAAAAAATAAGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGACTTTTAAAAATGTGTGAGAA</pcr_primer_p1>
		<pcr_primer_p2>TTCGTTTGTATTAATTGTGTCCT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGACTTTTAAAAATGTGTGAGAAATAGTTTCAGGAAAACATGAGAAGCTTAGAAATCAAGAATGAGATTATTATAAACAGATTAGTAGGGTGTAAAGGGACATAATGAAAATTTAATGTGTTTGAAACGTTTTAAAATAGAGTTGCAATGTTCAGGTTGGGTTCTATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGTTTCACGACCTACAGGACACAATTAATACAAACGAA</canonical_amplicon>
		<polymorphic_amplicon>GGACTTTTAAAAATGTGTGAGAAATAGTTTCAGGAAAACATGAGAAGCTTAGAAATCAAGAATGAGATTATTATAAACAGATTAGTAGGGTGTAAAGGGACATAATGAAAATTTAATGTGTTTGAAACGTTTTAAAATAGAGTTGCAATGTTCAGGTTGGGTTYTATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGTTTCACGACCTACAGGACACAATTAATACAAACGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37907</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>912825</contig_pos>
        <strand></strand>
        <context>ACRTGAAAAR[A/G]AAAGCGAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGACGTGAAAAA</left_flank>
        <right_flank>AAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTGGCAAAACAAATTATACAATCGCATGTGATGAATATGTGAATCTAAATTTCAGAATTATTGAATTTTTTTGGGAAAATTTTTTTTTGGAAATAAATATTATATTGGGGAGTTTGGGAGTTTTAAGATGCAAAAAAAAGATAAACGGTTATGAAGGACAGAGGGACTTTTAAAAATGTGTGAGAAATAGTTTCAGGAAAACATGAGAAGCTTAGAAATCAAGAATGAGATTATTATAAACAGATTAGTAGGGTGTAAAGGGACATAATGAAAATTTAATGTGTTTGAAACGTTTTAAAATAGAGTTGCAATGTTCAGGTTGGGTTCTATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGTTTCACGACCTACAGGACACAATTAATACAAACGAAAAGGTTTAAAGGGACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGACGTGAAAAAAAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAAAACAGTAGAAGGTTACCATAGCACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGGTATAAAGGGTAATCGGACTTCAAAGAATCAAAAAATAAGATACAAGTATTACAACAAATCCGGTTAATAGAAAAATCAGAATCTTTGGGATTTTTGTATCTTGGTTTGTTTTCTATGTTTTCTACTTCCCGGTTCATTATAATACAAATATAATGATGTCAAAATATACAAAAGGAAAAAAAATCAGAAGTTATTCTTATGCTTCGTTGCG</canonical>
            <polymorphic>ATTTTTGGCAAAACAAATTATACAATCGCATGTGATGAATATGTGAATCTAAATTTCAGAATTATTGAATTTTTTTGGGAAAATTTTTTTTTGGAAATAAATATTATATTGGGGAGTTTGGGAGTTTTAAGATGCAAAAAAAAGATAAACGGTTATGAAGGACAGAGGGACTTTTAAAAATGTGTGAGAAATAGTTTCAGGAAAACATGAGAAGCTTAGAAATCAAGAATGAGATTATTATAAACAGATTAGTAGGGTGTAAAGGGACATAATGAAAATTTAATGTGTTTGAAACGTTTTAAAATAGAGTTGCAATGTTCAGGTTGGGTTCTATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGTTTCACGACCTACAGGACACAATTAATACAAACGAAAAGGTTTAAAGGGACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGACGTGAAAAARAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAAAACAGTAGAAGGTTACCATAGCACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGGTATAAAGGGTAATCGGACTTCAAAGAATCAAAAAATAAGATACAAGTATTACAACAAATCCGGTTAATAGAAAAATCAGAATCTTTGGGATTTTTGTATCTTGGTTTGTTTTCTATGTTTTCTACTTCCCGGTTCATTATAATACAAATATAATGATGTCAAAATATACAAAAGGAAAAAAAATCAGAAGTTATTCTTATGCTTCGTTGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGAGTTGCAATGTTCAGGTT</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTCCCTTTGTTGTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAGAGTTGCAATGTTCAGGTTGGGTTCTATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGTTTCACGACCTACAGGACACAATTAATACAAACGAAAAGGTTTAAAGGGACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGACGTGAAAAAAAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>ATAGAGTTGCAATGTTCAGGTTGGGTTCTATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGTTTCACGACCTACAGGACACAATTAATACAAACGAAAAGGTTTAAAGGGACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGACGTGAAAAARAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37908</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>912897</contig_pos>
        <strand>+</strand>
        <context>GTTACCATAG[A/C]Actstaatcg</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAATTGGGTCAGAGACAACAAAGGGAAAAACAGTAGAAGGTTACCATAG</left_flank>
        <right_flank>ACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGGGAAAATTTTTTTTTGGAAATAAATATTATATTGGGGAGTTTGGGAGTTTTAAGATGCAAAAAAAAGATAAACGGTTATGAAGGACAGAGGGACTTTTAAAAATGTGTGAGAAATAGTTTCAGGAAAACATGAGAAGCTTAGAAATCAAGAATGAGATTATTATAAACAGATTAGTAGGGTGTAAAGGGACATAATGAAAATTTAATGTGTTTGAAACGTTTTAAAATAGAGTTGCAATGTTCAGGTTGGGTTCTATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGTTTCACGACCTACAGGACACAATTAATACAAACGAAAAGGTTTAAAGGGACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGACGTGAAAAAAAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAAAACAGTAGAAGGTTACCATAGCACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGGTATAAAGGGTAATCGGACTTCAAAGAATCAAAAAATAAGATACAAGTATTACAACAAATCCGGTTAATAGAAAAATCAGAATCTTTGGGATTTTTGTATCTTGGTTTGTTTTCTATGTTTTCTACTTCCCGGTTCATTATAATACAAATATAATGATGTCAAAATATACAAAAGGAAAAAAAATCAGAAGTTATTCTTATGCTTCGTTGCGTTTTGCCTTAACAGCGTTGATAATGATACATGAGAAGATCATAGCAAGAGCCTCAACAAACAAGACAATGAT</canonical>
            <polymorphic>TTTTGGGAAAATTTTTTTTTGGAAATAAATATTATATTGGGGAGTTTGGGAGTTTTAAGATGCAAAAAAAAGATAAACGGTTATGAAGGACAGAGGGACTTTTAAAAATGTGTGAGAAATAGTTTCAGGAAAACATGAGAAGCTTAGAAATCAAGAATGAGATTATTATAAACAGATTAGTAGGGTGTAAAGGGACATAATGAAAATTTAATGTGTTTGAAACGTTTTAAAATAGAGTTGCAATGTTCAGGTTGGGTTCTATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGTTTCACGACCTACAGGACACAATTAATACAAACGAAAAGGTTTAAAGGGACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGACGTGAAAAAAAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAAAACAGTAGAAGGTTACCATAGMACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGGTATAAAGGGTAATCGGACTTCAAAGAATCAAAAAATAAGATACAAGTATTACAACAAATCCGGTTAATAGAAAAATCAGAATCTTTGGGATTTTTGTATCTTGGTTTGTTTTCTATGTTTTCTACTTCCCGGTTCATTATAATACAAATATAATGATGTCAAAATATACAAAAGGAAAAAAAATCAGAAGTTATTCTTATGCTTCGTTGCGTTTTGCCTTAACAGCGTTGATAATGATACATGAGAAGATCATAGCAAGAGCCTCAACAAACAAGACAATGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>476 112 95 79 73 64 34 28 16 14 7 2</canonical_bands>
                <polymorphic_bands>476 112 95 95 73 64 34 28 14 7 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTGGGTCAGAGACAACA</pcr_primer_p1>
		<pcr_primer_p2>CCGTATAAAACTATCAGAATGTCA</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>AAATTGGGTCAGAGACAACAAAGGGAAAAACAGTAGAAGGTTACCATAGCACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGG</canonical_amplicon>
		<polymorphic_amplicon>AAATTGGGTCAGAGACAACAAAGGGAAAAACAGTAGAAGGTTACCATAGMACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37909</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>912901</contig_pos>
        <strand></strand>
        <context>CCATAGMAct[C/G]taatcgaaag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTGGGTCAGAGACAACAAAGGGAAAAACAGTAGAAGGTTACCATAGCACT</left_flank>
        <right_flank>TAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGAAAATTTTTTTTTGGAAATAAATATTATATTGGGGAGTTTGGGAGTTTTAAGATGCAAAAAAAAGATAAACGGTTATGAAGGACAGAGGGACTTTTAAAAATGTGTGAGAAATAGTTTCAGGAAAACATGAGAAGCTTAGAAATCAAGAATGAGATTATTATAAACAGATTAGTAGGGTGTAAAGGGACATAATGAAAATTTAATGTGTTTGAAACGTTTTAAAATAGAGTTGCAATGTTCAGGTTGGGTTCTATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGTTTCACGACCTACAGGACACAATTAATACAAACGAAAAGGTTTAAAGGGACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGACGTGAAAAAAAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAAAACAGTAGAAGGTTACCATAGCACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGGTATAAAGGGTAATCGGACTTCAAAGAATCAAAAAATAAGATACAAGTATTACAACAAATCCGGTTAATAGAAAAATCAGAATCTTTGGGATTTTTGTATCTTGGTTTGTTTTCTATGTTTTCTACTTCCCGGTTCATTATAATACAAATATAATGATGTCAAAATATACAAAAGGAAAAAAAATCAGAAGTTATTCTTATGCTTCGTTGCGTTTTGCCTTAACAGCGTTGATAATGATACATGAGAAGATCATAGCAAGAGCCTCAACAAACAAGACAATGATTCCG</canonical>
            <polymorphic>GGGAAAATTTTTTTTTGGAAATAAATATTATATTGGGGAGTTTGGGAGTTTTAAGATGCAAAAAAAAGATAAACGGTTATGAAGGACAGAGGGACTTTTAAAAATGTGTGAGAAATAGTTTCAGGAAAACATGAGAAGCTTAGAAATCAAGAATGAGATTATTATAAACAGATTAGTAGGGTGTAAAGGGACATAATGAAAATTTAATGTGTTTGAAACGTTTTAAAATAGAGTTGCAATGTTCAGGTTGGGTTCTATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGTTTCACGACCTACAGGACACAATTAATACAAACGAAAAGGTTTAAAGGGACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGACGTGAAAAAAAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAAAACAGTAGAAGGTTACCATAGCACTSTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGGTATAAAGGGTAATCGGACTTCAAAGAATCAAAAAATAAGATACAAGTATTACAACAAATCCGGTTAATAGAAAAATCAGAATCTTTGGGATTTTTGTATCTTGGTTTGTTTTCTATGTTTTCTACTTCCCGGTTCATTATAATACAAATATAATGATGTCAAAATATACAAAAGGAAAAAAAATCAGAAGTTATTCTTATGCTTCGTTGCGTTTTGCCTTAACAGCGTTGATAATGATACATGAGAAGATCATAGCAAGAGCCTCAACAAACAAGACAATGATTCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGGGTCAGAGACAACAAA</pcr_primer_p1>
		<pcr_primer_p2>CCGTATAAAACTATCAGAATGTCA</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>ATTGGGTCAGAGACAACAAAGGGAAAAACAGTAGAAGGTTACCATAGCACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGG</canonical_amplicon>
		<polymorphic_amplicon>ATTGGGTCAGAGACAACAAAGGGAAAAACAGTAGAAGGTTACCATAGCACTSTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37910</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>912960</contig_pos>
        <strand></strand>
        <context>ttctatagga[A/G]ktataaaama</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGA</left_flank>
        <right_flank>GTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAAAGATAAACGGTTATGAAGGACAGAGGGACTTTTAAAAATGTGTGAGAAATAGTTTCAGGAAAACATGAGAAGCTTAGAAATCAAGAATGAGATTATTATAAACAGATTAGTAGGGTGTAAAGGGACATAATGAAAATTTAATGTGTTTGAAACGTTTTAAAATAGAGTTGCAATGTTCAGGTTGGGTTCTATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGTTTCACGACCTACAGGACACAATTAATACAAACGAAAAGGTTTAAAGGGACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGACGTGAAAAAAAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAAAACAGTAGAAGGTTACCATAGCACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGGTATAAAGGGTAATCGGACTTCAAAGAATCAAAAAATAAGATACAAGTATTACAACAAATCCGGTTAATAGAAAAATCAGAATCTTTGGGATTTTTGTATCTTGGTTTGTTTTCTATGTTTTCTACTTCCCGGTTCATTATAATACAAATATAATGATGTCAAAATATACAAAAGGAAAAAAAATCAGAAGTTATTCTTATGCTTCGTTGCGTTTTGCCTTAACAGCGTTGATAATGATACATGAGAAGATCATAGCAAGAGCCTCAACAAACAAGACAATGATTCCGACGAAGGCGACATAGATGAGGTTGGTTTGAAACGCATTCCAGAAGAGTGTGGCGCATCC</canonical>
            <polymorphic>AAAAAAAAGATAAACGGTTATGAAGGACAGAGGGACTTTTAAAAATGTGTGAGAAATAGTTTCAGGAAAACATGAGAAGCTTAGAAATCAAGAATGAGATTATTATAAACAGATTAGTAGGGTGTAAAGGGACATAATGAAAATTTAATGTGTTTGAAACGTTTTAAAATAGAGTTGCAATGTTCAGGTTGGGTTCTATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGTTTCACGACCTACAGGACACAATTAATACAAACGAAAAGGTTTAAAGGGACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGACGTGAAAAAAAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAAAACAGTAGAAGGTTACCATAGCACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGARGTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGGTATAAAGGGTAATCGGACTTCAAAGAATCAAAAAATAAGATACAAGTATTACAACAAATCCGGTTAATAGAAAAATCAGAATCTTTGGGATTTTTGTATCTTGGTTTGTTTTCTATGTTTTCTACTTCCCGGTTCATTATAATACAAATATAATGATGTCAAAATATACAAAAGGAAAAAAAATCAGAAGTTATTCTTATGCTTCGTTGCGTTTTGCCTTAACAGCGTTGATAATGATACATGAGAAGATCATAGCAAGAGCCTCAACAAACAAGACAATGATTCCGACGAAGGCGACATAGATGAGGTTGGTTTGAAACGCATTCCAGAAGAGTGTGGCGCATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGGAAAAACAGTAGAAGGTTA</pcr_primer_p1>
		<pcr_primer_p2>CCGTATAAAACTATCAGAATGTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAGGGAAAAACAGTAGAAGGTTACCATAGCACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGG</canonical_amplicon>
		<polymorphic_amplicon>AAGGGAAAAACAGTAGAAGGTTACCATAGCACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGARGTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37911</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>912961</contig_pos>
        <strand></strand>
        <context>tctataggar[G/T]tataaaamat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAA</left_flank>
        <right_flank>TATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAAGATAAACGGTTATGAAGGACAGAGGGACTTTTAAAAATGTGTGAGAAATAGTTTCAGGAAAACATGAGAAGCTTAGAAATCAAGAATGAGATTATTATAAACAGATTAGTAGGGTGTAAAGGGACATAATGAAAATTTAATGTGTTTGAAACGTTTTAAAATAGAGTTGCAATGTTCAGGTTGGGTTCTATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGTTTCACGACCTACAGGACACAATTAATACAAACGAAAAGGTTTAAAGGGACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGACGTGAAAAAAAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAAAACAGTAGAAGGTTACCATAGCACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGGTATAAAGGGTAATCGGACTTCAAAGAATCAAAAAATAAGATACAAGTATTACAACAAATCCGGTTAATAGAAAAATCAGAATCTTTGGGATTTTTGTATCTTGGTTTGTTTTCTATGTTTTCTACTTCCCGGTTCATTATAATACAAATATAATGATGTCAAAATATACAAAAGGAAAAAAAATCAGAAGTTATTCTTATGCTTCGTTGCGTTTTGCCTTAACAGCGTTGATAATGATACATGAGAAGATCATAGCAAGAGCCTCAACAAACAAGACAATGATTCCGACGAAGGCGACATAGATGAGGTTGGTTTGAAACGCATTCCAGAAGAGTGTGGCGCATCCT</canonical>
            <polymorphic>AAAAAAAGATAAACGGTTATGAAGGACAGAGGGACTTTTAAAAATGTGTGAGAAATAGTTTCAGGAAAACATGAGAAGCTTAGAAATCAAGAATGAGATTATTATAAACAGATTAGTAGGGTGTAAAGGGACATAATGAAAATTTAATGTGTTTGAAACGTTTTAAAATAGAGTTGCAATGTTCAGGTTGGGTTCTATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGTTTCACGACCTACAGGACACAATTAATACAAACGAAAAGGTTTAAAGGGACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGACGTGAAAAAAAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAAAACAGTAGAAGGTTACCATAGCACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAKTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGGTATAAAGGGTAATCGGACTTCAAAGAATCAAAAAATAAGATACAAGTATTACAACAAATCCGGTTAATAGAAAAATCAGAATCTTTGGGATTTTTGTATCTTGGTTTGTTTTCTATGTTTTCTACTTCCCGGTTCATTATAATACAAATATAATGATGTCAAAATATACAAAAGGAAAAAAAATCAGAAGTTATTCTTATGCTTCGTTGCGTTTTGCCTTAACAGCGTTGATAATGATACATGAGAAGATCATAGCAAGAGCCTCAACAAACAAGACAATGATTCCGACGAAGGCGACATAGATGAGGTTGGTTTGAAACGCATTCCAGAAGAGTGTGGCGCATCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGGAAAAACAGTAGAAGGTTA</pcr_primer_p1>
		<pcr_primer_p2>CCGTATAAAACTATCAGAATGTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAGGGAAAAACAGTAGAAGGTTACCATAGCACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGG</canonical_amplicon>
		<polymorphic_amplicon>AAGGGAAAAACAGTAGAAGGTTACCATAGCACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAKTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37912</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>912969</contig_pos>
        <strand></strand>
        <context>arktataaaa[C/A]atctgtcaac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAA</left_flank>
        <right_flank>ATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAACGGTTATGAAGGACAGAGGGACTTTTAAAAATGTGTGAGAAATAGTTTCAGGAAAACATGAGAAGCTTAGAAATCAAGAATGAGATTATTATAAACAGATTAGTAGGGTGTAAAGGGACATAATGAAAATTTAATGTGTTTGAAACGTTTTAAAATAGAGTTGCAATGTTCAGGTTGGGTTCTATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGTTTCACGACCTACAGGACACAATTAATACAAACGAAAAGGTTTAAAGGGACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGACGTGAAAAAAAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAAAACAGTAGAAGGTTACCATAGCACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGGTATAAAGGGTAATCGGACTTCAAAGAATCAAAAAATAAGATACAAGTATTACAACAAATCCGGTTAATAGAAAAATCAGAATCTTTGGGATTTTTGTATCTTGGTTTGTTTTCTATGTTTTCTACTTCCCGGTTCATTATAATACAAATATAATGATGTCAAAATATACAAAAGGAAAAAAAATCAGAAGTTATTCTTATGCTTCGTTGCGTTTTGCCTTAACAGCGTTGATAATGATACATGAGAAGATCATAGCAAGAGCCTCAACAAACAAGACAATGATTCCGACGAAGGCGACATAGATGAGGTTGGTTTGAAACGCATTCCAGAAGAGTGTGGCGCATCCTTGCTGTAA</canonical>
            <polymorphic>ATAAACGGTTATGAAGGACAGAGGGACTTTTAAAAATGTGTGAGAAATAGTTTCAGGAAAACATGAGAAGCTTAGAAATCAAGAATGAGATTATTATAAACAGATTAGTAGGGTGTAAAGGGACATAATGAAAATTTAATGTGTTTGAAACGTTTTAAAATAGAGTTGCAATGTTCAGGTTGGGTTCTATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGTTTCACGACCTACAGGACACAATTAATACAAACGAAAAGGTTTAAAGGGACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGACGTGAAAAAAAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAAAACAGTAGAAGGTTACCATAGCACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAAMATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGGTATAAAGGGTAATCGGACTTCAAAGAATCAAAAAATAAGATACAAGTATTACAACAAATCCGGTTAATAGAAAAATCAGAATCTTTGGGATTTTTGTATCTTGGTTTGTTTTCTATGTTTTCTACTTCCCGGTTCATTATAATACAAATATAATGATGTCAAAATATACAAAAGGAAAAAAAATCAGAAGTTATTCTTATGCTTCGTTGCGTTTTGCCTTAACAGCGTTGATAATGATACATGAGAAGATCATAGCAAGAGCCTCAACAAACAAGACAATGATTCCGACGAAGGCGACATAGATGAGGTTGGTTTGAAACGCATTCCAGAAGAGTGTGGCGCATCCTTGCTGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGGAAAAACAGTAGAAGGTTA</pcr_primer_p1>
		<pcr_primer_p2>CCGTATAAAACTATCAGAATGTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAGGGAAAAACAGTAGAAGGTTACCATAGCACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGG</canonical_amplicon>
		<polymorphic_amplicon>AAGGGAAAAACAGTAGAAGGTTACCATAGCACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAAMATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37913</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>913080</contig_pos>
        <strand>+</strand>
        <context>gttATTTCCG[C/G]TCAATTTGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCG</left_flank>
        <right_flank>TCAATTTGGATGACATTCTGATAGTTTTATACGGTATAAAGGGTAATCGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTGTAAAGGGACATAATGAAAATTTAATGTGTTTGAAACGTTTTAAAATAGAGTTGCAATGTTCAGGTTGGGTTCTATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGTTTCACGACCTACAGGACACAATTAATACAAACGAAAAGGTTTAAAGGGACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGACGTGAAAAAAAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAAAACAGTAGAAGGTTACCATAGCACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGGTATAAAGGGTAATCGGACTTCAAAGAATCAAAAAATAAGATACAAGTATTACAACAAATCCGGTTAATAGAAAAATCAGAATCTTTGGGATTTTTGTATCTTGGTTTGTTTTCTATGTTTTCTACTTCCCGGTTCATTATAATACAAATATAATGATGTCAAAATATACAAAAGGAAAAAAAATCAGAAGTTATTCTTATGCTTCGTTGCGTTTTGCCTTAACAGCGTTGATAATGATACATGAGAAGATCATAGCAAGAGCCTCAACAAACAAGACAATGATTCCGACGAAGGCGACATAGATGAGGTTGGTTTGAAACGCATTCCAGAAGAGTGTGGCGCATCCTTGCTGTAAATTAGGTTTGTTTACGAGTCAGTGTTTGTTTTTTTCCTTCGGGTTTTCGTCCTCCTAGCTTTTTCAAACATTCACCTGTGAAAGTGTGGCACATTGGCACGAGGTTGGGAA</canonical>
            <polymorphic>GGTGTAAAGGGACATAATGAAAATTTAATGTGTTTGAAACGTTTTAAAATAGAGTTGCAATGTTCAGGTTGGGTTCTATGGCTTGTAGAAACAGCACATTTGAAGACATAAGAGACGAAACTTAGTTTCACGACCTACAGGACACAATTAATACAAACGAAAAGGTTTAAAGGGACATGTTGAAAGTCAAAACTTTTCAGAAAGAATTAATTGATAAGAATAGCCCATTTAAGGACGTGAAAAAAAAAGCGAAATTTAGTATTTAAAAAATTGGGTCAGAGACAACAAAGGGAAAAACAGTAGAAGGTTACCATAGCACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGSTCAATTTGGATGACATTCTGATAGTTTTATACGGTATAAAGGGTAATCGGACTTCAAAGAATCAAAAAATAAGATACAAGTATTACAACAAATCCGGTTAATAGAAAAATCAGAATCTTTGGGATTTTTGTATCTTGGTTTGTTTTCTATGTTTTCTACTTCCCGGTTCATTATAATACAAATATAATGATGTCAAAATATACAAAAGGAAAAAAAATCAGAAGTTATTCTTATGCTTCGTTGCGTTTTGCCTTAACAGCGTTGATAATGATACATGAGAAGATCATAGCAAGAGCCTCAACAAACAAGACAATGATTCCGACGAAGGCGACATAGATGAGGTTGGTTTGAAACGCATTCCAGAAGAGTGTGGCGCATCCTTGCTGTAAATTAGGTTTGTTTACGAGTCAGTGTTTGTTTTTTTCCTTCGGGTTTTCGTCCTCCTAGCTTTTTCAAACATTCACCTGTGAAAGTGTGGCACATTGGCACGAGGTTGGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGGAAAAACAGTAGAAGGTTAC</pcr_primer_p1>
		<pcr_primer_p2>AAGTCCGATTACCCTTTATACC</pcr_primer_p2>
		<pcr_amplicon_size>266</pcr_amplicon_size>
		<canonical_amplicon>AGGGAAAAACAGTAGAAGGTTACCATAGCACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGCTCAATTTGGATGACATTCTGATAGTTTTATACGGTATAAAGGGTAATCGGACTT</canonical_amplicon>
		<polymorphic_amplicon>AGGGAAAAACAGTAGAAGGTTACCATAGCACTCTAATCGAAAGTCACCCTACACTTGTTATTTGAGCGGAAATATCTGAACTTCTATAGGAAGTATAAAACATCTGTCAACTGACAAAATTTTCGTCATGATATGGCAAATATTTTATCAGTTGACAAAATTTCAATACCTTACAAAATAACCGAGATACATGGATTTGAAGTTATTTCCGSTCAATTTGGATGACATTCTGATAGTTTTATACGGTATAAAGGGTAATCGGACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37914</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>938287</contig_pos>
        <strand>+</strand>
        <context>AATTATCTGS[C/G]AWWAGTTTKW</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGC</left_flank>
        <right_flank>AAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTTTGGACTTTTTGCGCATTTTTCAATTTTCATAAAACTGCTTTTCAGTCTAAGCATCATCATGCTGAAAACTACATCGAGATGTATAAATACTTCCAACAAAATCTCAGCTTCAAAATTGCTCACGTCATCGCTGGCTTCATACCGTTCGAGCATCTCCCGGAAGCCGAATTCGAGCGAACCATGCTCATCCAGTACCAGCATGGAAATTATTCCGAGGATTTCAATGACGAACAACCCGAGCCACTCTCTTGCTGATTCAATTTTTCCTATCATAATAAGTTACTTGTTATCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCGCTGATTTTTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAGCAGCTTTTCTAGCTGAAAACAACACCAAACTAATATCAATATTGTTTTCTTACCTACCATTATTATAATTTGTAGTCATTTGCTCAATGATGGGCTCTCGATGTTTCCGCAAATGTCCGCAGAAGAACTCGTCGAATTCGAGATGAAACCGCCAGCCCTTGTCAGTATAGTAGAACATTTTCAAAGTGTGCATAAACAGTTTGTAGTAGCTGTGATCGACGATTATTTGCTTATCTCGCTAGAAAAACAAGGGGTTTCGTTGTGAGAGCTTTCGTAAACTAACGCTCTCTCCAACAGACTCGATATAGTCTATCAAATCATCATAATCAGCACCGAAATAGTCGCACGCAGTGGTTAGGAACATTTTCTCTTGTGGGCAGATCAGATGGTG</canonical>
            <polymorphic>TGTTTTGGACTTTTTGCGCATTTTTCAATTTTCATAAAACTGCTTTTCAGTCTAAGCATCATCATGCTGAAAACTACATCGAGATGTATAAATACTTCCAACAAAATCTCAGCTTCAAAATTGCTCACGTCATCGCTGGCTTCATACCGTTCGAGCATCTCCCGGAAGCCGAATTCGAGCGAACCATGCTCATCCAGTACCAGCATGGAAATTATTCCGAGGATTTCAATGACGAACAACCCGAGCCACTCTCTTGCTGATTCAATTTTTCCTATCATAATAAGTTACTTGTTATCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCGCTGATTTTTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCSAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAGCAGCTTTTCTAGCTGAAAACAACACCAAACTAATATCAATATTGTTTTCTTACCTACCATTATTATAATTTGTAGTCATTTGCTCAATGATGGGCTCTCGATGTTTCCGCAAATGTCCGCAGAAGAACTCGTCGAATTCGAGATGAAACCGCCAGCCCTTGTCAGTATAGTAGAACATTTTCAAAGTGTGCATAAACAGTTTGTAGTAGCTGTGATCGACGATTATTTGCTTATCTCGCTAGAAAAACAAGGGGTTTCGTTGTGAGAGCTTTCGTAAACTAACGCTCTCTCCAACAGACTCGATATAGTCTATCAAATCATCATAATCAGCACCGAAATAGTCGCACGCAGTGGTTAGGAACATTTTCTCTTGTGGGCAGATCAGATGGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>439 301 201 59</canonical_bands>
                <polymorphic_bands>439 360 201</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGACAACTGTGACTGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTCAAGAACATCGAGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAG</canonical_amplicon>
		<polymorphic_amplicon>TCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCSAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37915</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>938290</contig_pos>
        <strand>+</strand>
        <context>TATCTGSSAW[A/T]AGTTTKWAAR</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAA</left_flank>
        <right_flank>AGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGACTTTTTGCGCATTTTTCAATTTTCATAAAACTGCTTTTCAGTCTAAGCATCATCATGCTGAAAACTACATCGAGATGTATAAATACTTCCAACAAAATCTCAGCTTCAAAATTGCTCACGTCATCGCTGGCTTCATACCGTTCGAGCATCTCCCGGAAGCCGAATTCGAGCGAACCATGCTCATCCAGTACCAGCATGGAAATTATTCCGAGGATTTCAATGACGAACAACCCGAGCCACTCTCTTGCTGATTCAATTTTTCCTATCATAATAAGTTACTTGTTATCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCGCTGATTTTTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAGCAGCTTTTCTAGCTGAAAACAACACCAAACTAATATCAATATTGTTTTCTTACCTACCATTATTATAATTTGTAGTCATTTGCTCAATGATGGGCTCTCGATGTTTCCGCAAATGTCCGCAGAAGAACTCGTCGAATTCGAGATGAAACCGCCAGCCCTTGTCAGTATAGTAGAACATTTTCAAAGTGTGCATAAACAGTTTGTAGTAGCTGTGATCGACGATTATTTGCTTATCTCGCTAGAAAAACAAGGGGTTTCGTTGTGAGAGCTTTCGTAAACTAACGCTCTCTCCAACAGACTCGATATAGTCTATCAAATCATCATAATCAGCACCGAAATAGTCGCACGCAGTGGTTAGGAACATTTTCTCTTGTGGGCAGATCAGATGGTGCAC</canonical>
            <polymorphic>TTTGGACTTTTTGCGCATTTTTCAATTTTCATAAAACTGCTTTTCAGTCTAAGCATCATCATGCTGAAAACTACATCGAGATGTATAAATACTTCCAACAAAATCTCAGCTTCAAAATTGCTCACGTCATCGCTGGCTTCATACCGTTCGAGCATCTCCCGGAAGCCGAATTCGAGCGAACCATGCTCATCCAGTACCAGCATGGAAATTATTCCGAGGATTTCAATGACGAACAACCCGAGCCACTCTCTTGCTGATTCAATTTTTCCTATCATAATAAGTTACTTGTTATCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCGCTGATTTTTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAWAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAGCAGCTTTTCTAGCTGAAAACAACACCAAACTAATATCAATATTGTTTTCTTACCTACCATTATTATAATTTGTAGTCATTTGCTCAATGATGGGCTCTCGATGTTTCCGCAAATGTCCGCAGAAGAACTCGTCGAATTCGAGATGAAACCGCCAGCCCTTGTCAGTATAGTAGAACATTTTCAAAGTGTGCATAAACAGTTTGTAGTAGCTGTGATCGACGATTATTTGCTTATCTCGCTAGAAAAACAAGGGGTTTCGTTGTGAGAGCTTTCGTAAACTAACGCTCTCTCCAACAGACTCGATATAGTCTATCAAATCATCATAATCAGCACCGAAATAGTCGCACGCAGTGGTTAGGAACATTTTCTCTTGTGGGCAGATCAGATGGTGCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGACAACTGTGACTGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTCAAGAACATCGAGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAG</canonical_amplicon>
		<polymorphic_amplicon>TCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAWAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37916</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>938297</contig_pos>
        <strand>+</strand>
        <context>SAWWAGTTTK[A/T]AARRAAAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTT</left_flank>
        <right_flank>AAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTGCGCATTTTTCAATTTTCATAAAACTGCTTTTCAGTCTAAGCATCATCATGCTGAAAACTACATCGAGATGTATAAATACTTCCAACAAAATCTCAGCTTCAAAATTGCTCACGTCATCGCTGGCTTCATACCGTTCGAGCATCTCCCGGAAGCCGAATTCGAGCGAACCATGCTCATCCAGTACCAGCATGGAAATTATTCCGAGGATTTCAATGACGAACAACCCGAGCCACTCTCTTGCTGATTCAATTTTTCCTATCATAATAAGTTACTTGTTATCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCGCTGATTTTTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAGCAGCTTTTCTAGCTGAAAACAACACCAAACTAATATCAATATTGTTTTCTTACCTACCATTATTATAATTTGTAGTCATTTGCTCAATGATGGGCTCTCGATGTTTCCGCAAATGTCCGCAGAAGAACTCGTCGAATTCGAGATGAAACCGCCAGCCCTTGTCAGTATAGTAGAACATTTTCAAAGTGTGCATAAACAGTTTGTAGTAGCTGTGATCGACGATTATTTGCTTATCTCGCTAGAAAAACAAGGGGTTTCGTTGTGAGAGCTTTCGTAAACTAACGCTCTCTCCAACAGACTCGATATAGTCTATCAAATCATCATAATCAGCACCGAAATAGTCGCACGCAGTGGTTAGGAACATTTTCTCTTGTGGGCAGATCAGATGGTGCACATTTGTC</canonical>
            <polymorphic>TTTTTGCGCATTTTTCAATTTTCATAAAACTGCTTTTCAGTCTAAGCATCATCATGCTGAAAACTACATCGAGATGTATAAATACTTCCAACAAAATCTCAGCTTCAAAATTGCTCACGTCATCGCTGGCTTCATACCGTTCGAGCATCTCCCGGAAGCCGAATTCGAGCGAACCATGCTCATCCAGTACCAGCATGGAAATTATTCCGAGGATTTCAATGACGAACAACCCGAGCCACTCTCTTGCTGATTCAATTTTTCCTATCATAATAAGTTACTTGTTATCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCGCTGATTTTTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTWAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAGCAGCTTTTCTAGCTGAAAACAACACCAAACTAATATCAATATTGTTTTCTTACCTACCATTATTATAATTTGTAGTCATTTGCTCAATGATGGGCTCTCGATGTTTCCGCAAATGTCCGCAGAAGAACTCGTCGAATTCGAGATGAAACCGCCAGCCCTTGTCAGTATAGTAGAACATTTTCAAAGTGTGCATAAACAGTTTGTAGTAGCTGTGATCGACGATTATTTGCTTATCTCGCTAGAAAAACAAGGGGTTTCGTTGTGAGAGCTTTCGTAAACTAACGCTCTCTCCAACAGACTCGATATAGTCTATCAAATCATCATAATCAGCACCGAAATAGTCGCACGCAGTGGTTAGGAACATTTTCTCTTGTGGGCAGATCAGATGGTGCACATTTGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 406 93</canonical_bands>
                <polymorphic_bands>594 406</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>502 405 93</canonical_bands>
                <polymorphic_bands>595 405</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGACAACTGTGACTGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTCAAGAACATCGAGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAG</canonical_amplicon>
		<polymorphic_amplicon>TCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTWAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37917</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>938301</contig_pos>
        <strand>+</strand>
        <context>AGTTTKWAAR[A/G]AAAGTTCTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAA</left_flank>
        <right_flank>AAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCGCATTTTTCAATTTTCATAAAACTGCTTTTCAGTCTAAGCATCATCATGCTGAAAACTACATCGAGATGTATAAATACTTCCAACAAAATCTCAGCTTCAAAATTGCTCACGTCATCGCTGGCTTCATACCGTTCGAGCATCTCCCGGAAGCCGAATTCGAGCGAACCATGCTCATCCAGTACCAGCATGGAAATTATTCCGAGGATTTCAATGACGAACAACCCGAGCCACTCTCTTGCTGATTCAATTTTTCCTATCATAATAAGTTACTTGTTATCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCGCTGATTTTTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAGCAGCTTTTCTAGCTGAAAACAACACCAAACTAATATCAATATTGTTTTCTTACCTACCATTATTATAATTTGTAGTCATTTGCTCAATGATGGGCTCTCGATGTTTCCGCAAATGTCCGCAGAAGAACTCGTCGAATTCGAGATGAAACCGCCAGCCCTTGTCAGTATAGTAGAACATTTTCAAAGTGTGCATAAACAGTTTGTAGTAGCTGTGATCGACGATTATTTGCTTATCTCGCTAGAAAAACAAGGGGTTTCGTTGTGAGAGCTTTCGTAAACTAACGCTCTCTCCAACAGACTCGATATAGTCTATCAAATCATCATAATCAGCACCGAAATAGTCGCACGCAGTGGTTAGGAACATTTTCTCTTGTGGGCAGATCAGATGGTGCACATTTGTCATAC</canonical>
            <polymorphic>TGCGCATTTTTCAATTTTCATAAAACTGCTTTTCAGTCTAAGCATCATCATGCTGAAAACTACATCGAGATGTATAAATACTTCCAACAAAATCTCAGCTTCAAAATTGCTCACGTCATCGCTGGCTTCATACCGTTCGAGCATCTCCCGGAAGCCGAATTCGAGCGAACCATGCTCATCCAGTACCAGCATGGAAATTATTCCGAGGATTTCAATGACGAACAACCCGAGCCACTCTCTTGCTGATTCAATTTTTCCTATCATAATAAGTTACTTGTTATCTCTTCTTTTTCATCTCTCTTTTCTTATCACACTGAAATTTCTCGCTGATTTTTTTTGTATCTCTTCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAARAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAGCAGCTTTTCTAGCTGAAAACAACACCAAACTAATATCAATATTGTTTTCTTACCTACCATTATTATAATTTGTAGTCATTTGCTCAATGATGGGCTCTCGATGTTTCCGCAAATGTCCGCAGAAGAACTCGTCGAATTCGAGATGAAACCGCCAGCCCTTGTCAGTATAGTAGAACATTTTCAAAGTGTGCATAAACAGTTTGTAGTAGCTGTGATCGACGATTATTTGCTTATCTCGCTAGAAAAACAAGGGGTTTCGTTGTGAGAGCTTTCGTAAACTAACGCTCTCTCCAACAGACTCGATATAGTCTATCAAATCATCATAATCAGCACCGAAATAGTCGCACGCAGTGGTTAGGAACATTTTCTCTTGTGGGCAGATCAGATGGTGCACATTTGTCATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGACAACTGTGACTGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTCAAGAACATCGAGAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAAAAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAG</canonical_amplicon>
		<polymorphic_amplicon>TCTGACAACTGTGACTGAAAATGAATTTTTTTTTATTTTGGAATTTTTTTTATTTTAAAAATTTATAAAATGTATTTTGCATGTGACATAGGCATTTTCAGAGAGATTCGTTGTCAAAACGCATGTAAAAATTATCTGCAAAGAGTTTTAAAARAAAGTTCTATGAGATTTCTTCAATTTCTGGAATGTCCGCAATAGCGATTTCCAAGGCTGTCCTTCTGGCCGCCATCATTTCTCGATGTTCTTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37918</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>956843</contig_pos>
        <strand>+</strand>
        <context>ATCATTTTTG[C/T]AAAAAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATAAGAATTGACAAATCCAACTTCCTATTTGTAATTTAAATCATTTTTG</left_flank>
        <right_flank>AAAAAAAAATTCTACAGTAATTCCTAATACTCTGGAAAAAATCGAAGTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTACCAAGTTCAGCAAAGTCGATGTTTCAATGGTTGTGAGAAGCAGGAGTTGATTCATTGGGGATGTGGTGTCTTTCAGGAATTCAATCTGAAATTTTACATTTTCAAAGTGTGTTTTTCGAAAAACATCCATAATAGATATATTTGTGCAACACTCGAAACATCATGTTTTTGCTCAATCAGAACTAAGAACTGTTGTTGTTTTTTTTCTTGAAAACTGGAAAGGTGAACACTGTCAATAGAAAAGTATGAAAATACCAATATAGGTCGAAAGAGGATAATTTTATCATTAAGCTCCGCCCAAAATCAACATCTTGGCACTTGATCAATGACCCATTTATTGGGTTTTGTGATATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTTCAAGCTGACAATCTTGCTACAGTAACCTATATAAACTTCGACTATGAGACAATAAGAATTGACAAATCCAACTTCCTATTTGTAATTTAAATCATTTTTGAAAAAAAAAATTCTACAGTAATTCCTAATACTCTGGAAAAAATCGAAGTTCAAAGTCTGGACTTCCTTGATCAATTTTAGAAATGTAGTTTTTTTCAGAGTTTGCTAGTTTATAAAAAGTTGAAAATAAACTATTTGGATAAGATGTTTTAATTTGAATTAGTTGCGGTCTCGAATTCCCAGAATTTTTATTTAATTGGTTACCGTATATTCTTTCAAAGAAGCGAACTCAATACGCGCACTTTGAGCTCAATTATCTCGGCTCGTCTAGAAGATATCGAAATGTGTTCTACTAATAAATTTTCAATTATGATAATAAAATTATTGTGTCAGTTGACACATTTTCAATATCTTTCAAAGGTACCGAGATAATTGAGCTCAAAGTGCACATTAGGGTTGGCTACTACTAAAGCAAATACGGTAGACTGGGGTTTTGAAATTCCAAAAATCTTTCCGAGAGCTTACAAACCCCAACATTTCAAAAATTGATATTATTCCCAGA</canonical>
            <polymorphic>TTACCAAGTTCAGCAAAGTCGATGTTTCAATGGTTGTGAGAAGCAGGAGTTGATTCATTGGGGATGTGGTGTCTTTCAGGAATTCAATCTGAAATTTTACATTTTCAAAGTGTGTTTTTCGAAAAACATCCATAATAGATATATTTGTGCAACACTCGAAACATCATGTTTTTGCTCAATCAGAACTAAGAACTGTTGTTGTTTTTTTTCTTGAAAACTGGAAAGGTGAACACTGTCAATAGAAAAGTATGAAAATACCAATATAGGTCGAAAGAGGATAATTTTATCATTAAGCTCCGCCCAAAATCAACATCTTGGCACTTGATCAATGACCCATTTATTGGGTTTTGTGATATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTTCAAGCTGACAATCTTGCTACAGTAACCTATATAAACTTCGACTATGAGACAATAAGAATTGACAAATCCAACTTCCTATTTGTAATTTAAATCATTTTTGYAAAAAAAAATTCTACAGTAATTCCTAATACTCTGGAAAAAATCGAAGTTCAAAGTCTGGACTTCCTTGATCAATTTTAGAAATGTAGTTTTTTTCAGAGTTTGCTAGTTTATAAAAAGTTGAAAATAAACTATTTGGATAAGATGTTTTAATTTGAATTAGTTGCGGTCTCGAATTCCCAGAATTTTTATTTAATTGGTTACCGTATATTCTTTCAAAGAAGCGAACTCAATACGCGCACTTTGAGCTCAATTATCTCGGCTCGTCTAGAAGATATCGAAATGTGTTCTACTAATAAATTTTCAATTATGATAATAAAATTATTGTGTCAGTTGACACATTTTCAATATCTTTCAAAGGTACCGAGATAATTGAGCTCAAAGTGCACATTAGGGTTGGCTACTACTAAAGCAAATACGGTAGACTGGGGTTTTGAAATTCCAAAAATCTTTCCGAGAGCTTACAAACCCCAACATTTCAAAAATTGATATTATTCCCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGGGTTTTGTGATATAGTTTG</pcr_primer_p1>
		<pcr_primer_p2>TTCTAAAATTGATCAAGGAAGTC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ATTGGGTTTTGTGATATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTTCAAGCTGACAATCTTGCTACAGTAACCTATATAAACTTCGACTATGAGACAATAAGAATTGACAAATCCAACTTCCTATTTGTAATTTAAATCATTTTTGAAAAAAAAAATTCTACAGTAATTCCTAATACTCTGGAAAAAATCGAAGTTCAAAGTCTGGACTTCCTTGATCAATTTTAGAA</canonical_amplicon>
		<polymorphic_amplicon>ATTGGGTTTTGTGATATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTTCAAGCTGACAATCTTGCTACAGTAACCTATATAAACTTCGACTATGAGACAATAAGAATTGACAAATCCAACTTCCTATTTGTAATTTAAATCATTTTTGYAAAAAAAAATTCTACAGTAATTCCTAATACTCTGGAAAAAATCGAAGTTCAAAGTCTGGACTTCCTTGATCAATTTTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37919</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>957125</contig_pos>
        <strand></strand>
        <context>gatatcgaaa[T/A]gtgttctact</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TACGCGCACTTTGAGCTCAATTATCTCGGCTCGTCTAGAAGATATCGAAA</left_flank>
        <right_flank>GTGTTCTACTAATAAATTTTCAATTATGATAATAAAATTATTGTGTCAGT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATCATTAAGCTCCGCCCAAAATCAACATCTTGGCACTTGATCAATGACCCATTTATTGGGTTTTGTGATATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTTCAAGCTGACAATCTTGCTACAGTAACCTATATAAACTTCGACTATGAGACAATAAGAATTGACAAATCCAACTTCCTATTTGTAATTTAAATCATTTTTGAAAAAAAAAATTCTACAGTAATTCCTAATACTCTGGAAAAAATCGAAGTTCAAAGTCTGGACTTCCTTGATCAATTTTAGAAATGTAGTTTTTTTCAGAGTTTGCTAGTTTATAAAAAGTTGAAAATAAACTATTTGGATAAGATGTTTTAATTTGAATTAGTTGCGGTCTCGAATTCCCAGAATTTTTATTTAATTGGTTACCGTATATTCTTTCAAAGAAGCGAACTCAATACGCGCACTTTGAGCTCAATTATCTCGGCTCGTCTAGAAGATATCGAAATGTGTTCTACTAATAAATTTTCAATTATGATAATAAAATTATTGTGTCAGTTGACACATTTTCAATATCTTTCAAAGGTACCGAGATAATTGAGCTCAAAGTGCACATTAGGGTTGGCTACTACTAAAGCAAATACGGTAGACTGGGGTTTTGAAATTCCAAAAATCTTTCCGAGAGCTTACAAACCCCAACATTTCAAAAATTGATATTATTCCCAGATCCCATAGCCCATAAATCCTAACTCACATTCAAATGATTTCCTTCCTCAATAAACTCATCGAGCGCTGACAAAGATGTTCCTGGATTTGGATTGGTGAAATCGGACATTCCAGACGCTAATAAGTCAGCTCCACGGGTGCACCACGCATTTGCCTGAAAAATATGTTTCGTACTATCCAACCCCCATCTACAAACCTGTGCAATTTGCTCATGCATCGTAGCACTACGCTTCAGACAATCGCCTCGTCGCTCCAATGCGGATGTCAACGCCGCTGCCATCCT</canonical>
            <polymorphic>TTTATCATTAAGCTCCGCCCAAAATCAACATCTTGGCACTTGATCAATGACCCATTTATTGGGTTTTGTGATATAGTTTGATCAGTATGGATTACAGTAATATACAAACATTTTTTTCAAGCTGACAATCTTGCTACAGTAACCTATATAAACTTCGACTATGAGACAATAAGAATTGACAAATCCAACTTCCTATTTGTAATTTAAATCATTTTTGAAAAAAAAAATTCTACAGTAATTCCTAATACTCTGGAAAAAATCGAAGTTCAAAGTCTGGACTTCCTTGATCAATTTTAGAAATGTAGTTTTTTTCAGAGTTTGCTAGTTTATAAAAAGTTGAAAATAAACTATTTGGATAAGATGTTTTAATTTGAATTAGTTGCGGTCTCGAATTCCCAGAATTTTTATTTAATTGGTTACCGTATATTCTTTCAAAGAAGCGAACTCAATACGCGCACTTTGAGCTCAATTATCTCGGCTCGTCTAGAAGATATCGAAAWGTGTTCTACTAATAAATTTTCAATTATGATAATAAAATTATTGTGTCAGTTGACACATTTTCAATATCTTTCAAAGGTACCGAGATAATTGAGCTCAAAGTGCACATTAGGGTTGGCTACTACTAAAGCAAATACGGTAGACTGGGGTTTTGAAATTCCAAAAATCTTTCCGAGAGCTTACAAACCCCAACATTTCAAAAATTGATATTATTCCCAGATCCCATAGCCCATAAATCCTAACTCACATTCAAATGATTTCCTTCCTCAATAAACTCATCGAGCGCTGACAAAGATGTTCCTGGATTTGGATTGGTGAAATCGGACATTCCAGACGCTAATAAGTCAGCTCCACGGGTGCACCACGCATTTGCCTGAAAAATATGTTTCGTACTATCCAACCCCCATCTACAAACCTGTGCAATTTGCTCATGCATCGTAGCACTACGCTTCAGACAATCGCCTCGTCGCTCCAATGCGGATGTCAACGCCGCTGCCATCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCCAGAATTTTTATTTAATTG</pcr_primer_p1>
		<pcr_primer_p2>CAGTCTACCGTATTTGCTTTAGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTCCCAGAATTTTTATTTAATTGGTTACCGTATATTCTTTCAAAGAAGCGAACTCAATACGCGCACTTTGAGCTCAATTATCTCGGCTCGTCTAGAAGATATCGAAATGTGTTCTACTAATAAATTTTCAATTATGATAATAAAATTATTGTGTCAGTTGACACATTTTCAATATCTTTCAAAGGTACCGAGATAATTGAGCTCAAAGTGCACATTAGGGTTGGCTACTACTAAAGCAAATACGGTAGACTG</canonical_amplicon>
		<polymorphic_amplicon>TTCCCAGAATTTTTATTTAATTGGTTACCGTATATTCTTTCAAAGAAGCGAACTCAATACGCGCACTTTGAGCTCAATTATCTCGGCTCGTCTAGAAGATATCGAAAWGTGTTCTACTAATAAATTTTCAATTATGATAATAAAATTATTGTGTCAGTTGACACATTTTCAATATCTTTCAAAGGTACCGAGATAATTGAGCTCAAAGTGCACATTAGGGTTGGCTACTACTAAAGCAAATACGGTAGACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37920</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>958499</contig_pos>
        <strand>+</strand>
        <context>CATTTTTCTT[A/G]AAGAAAACAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTATGCATCATTAACTTATTAAGTAGCGGTCCTTTATCTCATTTTTCTT</left_flank>
        <right_flank>AAGAAAACAAAAGATAAAGCTTAGGAGGGGAAGATTGTAAGATATTGTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAATTCTCATCCAAAAGTCAAGGATAAGGATTGCAAAAAACTAAGAGAGATAGGAAAAATAAAAATGCGGGAAGAACGATGGGAGAGAGGATGGGGGGGGGGGGGGGGGGATTCTCAATGTGTGAAAAAGATGAAAAAGATCTTTGATTACCTATCAATTCAAGTTGTAAAAAACGCACACACCAAGGTATAGACTGAATTAAAAATAGATCTATCAGGGCAGAACTGGAGGAAAATAAGGATCAAGTGTCCGATAACTCACCATAGCTCCTTCGGTGTATTGTCTGTGCTGTTCGGCAAGATGCAAAGCCTTTTCGGTGCAGTTTCCGACTTCTCGATGCTCCTCCAAATACAGCATGTGGCGTGCGAATGCGGCTTGTAGCTGAAATAAAAAAAAACAATAGTATTAATTAATATCCAGTTGAGTGGATTCTAAAAAATAATTAGTTTATGCATCATTAACTTATTAAGTAGCGGTCCTTTATCTCATTTTTCTTCAAGAAAACAAAAGATAAAGCTTAGGAGGGGAAGATTGTAAGATATTGTACGGCGAATGAGATAAATGATTGGGTGGAACAGGAACTAGAAGTAACGAACAACACAACTGATCATTTACTTTCTTTTTACACTTACAAGAAGCGCTGAAACTAGAACTTTGAGAAAAATAGGTTCAATTCCTTGTTTACGCCGCAAATCCAACTAGCTGACCGATGTGTGAAGTCTGAGAGAGTGGGTAAAAGGGTCAGCGGCGAGAAATCTGACACCTTCCTGTTTTTTAAGAAACGGACAATAAATAAAGAGGCTGGAGTACTAGTAGTTGTACTAGTACTACTAGACCCGTCAATTTTCGATTCACGGAAGTTGGCAAATTGCTTTTTTTTGGCTTGTCATGTTTCCCCTAATCGTTTCTATTTGAAAAAGCTTCTAAAATTGATTGTTTTAAAGGACCACATTGGCCAGAATTTTTTCGTTTTTTTTTCTCAGAAAATTAATGGGAA</canonical>
            <polymorphic>AGGAATTCTCATCCAAAAGTCAAGGATAAGGATTGCAAAAAACTAAGAGAGATAGGAAAAATAAAAATGCGGGAAGAACGATGGGAGAGAGGATGGGGGGGGGGGGGGGGGGATTCTCAATGTGTGAAAAAGATGAAAAAGATCTTTGATTACCTATCAATTCAAGTTGTAAAAAACGCACACACCAAGGTATAGACTGAATTAAAAATAGATCTATCAGGGCAGAACTGGAGGAAAATAAGGATCAAGTGTCCGATAACTCACCATAGCTCCTTCGGTGTATTGTCTGTGCTGTTCGGCAAGATGCAAAGCCTTTTCGGTGCAGTTTCCGACTTCTCGATGCTCCTCCAAATACAGCATGTGGCGTGCGAATGCGGCTTGTAGCTGAAATAAAAAAAAACAATAGTATTAATTAATATCCAGTTGAGTGGATTCTAAAAAATAATTAGTTTATGCATCATTAACTTATTAAGTAGCGGTCCTTTATCTCATTTTTCTTRAAGAAAACAAAAGATAAAGCTTAGGAGGGGAAGATTGTAAGATATTGTACGGCGAATGAGATAAATGATTGGGTGGAACAGGAACTAGAAGTAACGAACAACACAACTGATCATTTACTTTCTTTTTACACTTACAAGAAGCGCTGAAACTAGAACTTTGAGAAAAATAGGTTCAATTCCTTGTTTACGCCGCAAATCCAACTAGCTGACCGATGTGTGAAGTCTGAGAGAGTGGGTAAAAGGGTCAGCGGCGAGAAATCTGACACCTTCCTGTTTTTTAAGAAACGGACAATAAATAAAGAGGCTGGAGTACTAGTAGTTGTACTAGTACTACTAGACCCGTCAATTTTCGATTCACGGAAGTTGGCAAATTGCTTTTTTTTGGCTTGTCATGTTTCCCCTAATCGTTTCTATTTGAAAAAGCTTCTAAAATTGATTGTTTTAAAGGACCACATTGGCCAGAATTTTTTCGTTTTTTTTTCTCAGAAAATTAATGGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>500 336 164</canonical_bands>
                <polymorphic_bands>664 336</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCCAGTTGAGTGGATTCTAAA</pcr_primer_p1>
		<pcr_primer_p2>AGTTCTAGTTTCAGCGCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TATCCAGTTGAGTGGATTCTAAAAAATAATTAGTTTATGCATCATTAACTTATTAAGTAGCGGTCCTTTATCTCATTTTTCTTCAAGAAAACAAAAGATAAAGCTTAGGAGGGGAAGATTGTAAGATATTGTACGGCGAATGAGATAAATGATTGGGTGGAACAGGAACTAGAAGTAACGAACAACACAACTGATCATTTACTTTCTTTTTACACTTACAAGAAGCGCTGAAACTAGAACT</canonical_amplicon>
		<polymorphic_amplicon>TATCCAGTTGAGTGGATTCTAAAAAATAATTAGTTTATGCATCATTAACTTATTAAGTAGCGGTCCTTTATCTCATTTTTCTTRAAGAAAACAAAAGATAAAGCTTAGGAGGGGAAGATTGTAAGATATTGTACGGCGAATGAGATAAATGATTGGGTGGAACAGGAACTAGAAGTAACGAACAACACAACTGATCATTTACTTTCTTTTTACACTTACAAGAAGCGCTGAAACTAGAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37921</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>958875</contig_pos>
        <strand>+</strand>
        <context>GGCAAATTGC[A/G]TTTTTTTGGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGTACTACTAGACCCGTCAATTTTCGATTCACGGAAGTTGGCAAATTGC</left_flank>
        <right_flank>TTTTTTTGGCTTGTCATGTTTCCCCTAATCGTTTCTATTTGAAAAAGCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTGTAGCTGAAATAAAAAAAAACAATAGTATTAATTAATATCCAGTTGAGTGGATTCTAAAAAATAATTAGTTTATGCATCATTAACTTATTAAGTAGCGGTCCTTTATCTCATTTTTCTTCAAGAAAACAAAAGATAAAGCTTAGGAGGGGAAGATTGTAAGATATTGTACGGCGAATGAGATAAATGATTGGGTGGAACAGGAACTAGAAGTAACGAACAACACAACTGATCATTTACTTTCTTTTTACACTTACAAGAAGCGCTGAAACTAGAACTTTGAGAAAAATAGGTTCAATTCCTTGTTTACGCCGCAAATCCAACTAGCTGACCGATGTGTGAAGTCTGAGAGAGTGGGTAAAAGGGTCAGCGGCGAGAAATCTGACACCTTCCTGTTTTTTAAGAAACGGACAATAAATAAAGAGGCTGGAGTACTAGTAGTTGTACTAGTACTACTAGACCCGTCAATTTTCGATTCACGGAAGTTGGCAAATTGCTTTTTTTTGGCTTGTCATGTTTCCCCTAATCGTTTCTATTTGAAAAAGCTTCTAAAATTGATTGTTTTAAAGGACCACATTGGCCAGAATTTTTTCGTTTTTTTTTCTCAGAAAATTAATGGGAAGAAGTCATTAAAGTAAGTGACGGATGGTCGACGAACATTAATAAATTATCCTAGCCCGTAAAAATTTCCAGGAAAAAACGATGAGAGAAAAATTGTCGATCATATCACAGGTGAGAAAAAGAGGAGGATGATCCGTGAAAAAGTGGAACAGAAAAACTTGATAAAATGAGTGAGAGAGAAGAAGATATGATATGAAAAGGTGCCGCTGGTGTCAGAAAAAAGATAAATGACTAGAGATGAACATTTGTAAGGGGTCTTCAAACCCAGATTTTGATGGAAATTATGGGATAGGTTAGGAATAGCTTGTCTATACATTATATTAGAAGCTGTTCGACAGTTTCAGTGCCAAAATCTCGTTTTCAATGCGATTTTCTCA</canonical>
            <polymorphic>GCTTGTAGCTGAAATAAAAAAAAACAATAGTATTAATTAATATCCAGTTGAGTGGATTCTAAAAAATAATTAGTTTATGCATCATTAACTTATTAAGTAGCGGTCCTTTATCTCATTTTTCTTCAAGAAAACAAAAGATAAAGCTTAGGAGGGGAAGATTGTAAGATATTGTACGGCGAATGAGATAAATGATTGGGTGGAACAGGAACTAGAAGTAACGAACAACACAACTGATCATTTACTTTCTTTTTACACTTACAAGAAGCGCTGAAACTAGAACTTTGAGAAAAATAGGTTCAATTCCTTGTTTACGCCGCAAATCCAACTAGCTGACCGATGTGTGAAGTCTGAGAGAGTGGGTAAAAGGGTCAGCGGCGAGAAATCTGACACCTTCCTGTTTTTTAAGAAACGGACAATAAATAAAGAGGCTGGAGTACTAGTAGTTGTACTAGTACTACTAGACCCGTCAATTTTCGATTCACGGAAGTTGGCAAATTGCRTTTTTTTGGCTTGTCATGTTTCCCCTAATCGTTTCTATTTGAAAAAGCTTCTAAAATTGATTGTTTTAAAGGACCACATTGGCCAGAATTTTTTCGTTTTTTTTTCTCAGAAAATTAATGGGAAGAAGTCATTAAAGTAAGTGACGGATGGTCGACGAACATTAATAAATTATCCTAGCCCGTAAAAATTTCCAGGAAAAAACGATGAGAGAAAAATTGTCGATCATATCACAGGTGAGAAAAAGAGGAGGATGATCCGTGAAAAAGTGGAACAGAAAAACTTGATAAAATGAGTGAGAGAGAAGAAGATATGATATGAAAAGGTGCCGCTGGTGTCAGAAAAAAGATAAATGACTAGAGATGAACATTTGTAAGGGGTCTTCAAACCCAGATTTTGATGGAAATTATGGGATAGGTTAGGAATAGCTTGTCTATACATTATATTAGAAGCTGTTCGACAGTTTCAGTGCCAAAATCTCGTTTTCAATGCGATTTTCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTAAGAAACGGACAATAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCCGTCACTTACTTTAATGACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTAAGAAACGGACAATAAATAAAGAGGCTGGAGTACTAGTAGTTGTACTAGTACTACTAGACCCGTCAATTTTCGATTCACGGAAGTTGGCAAATTGCTTTTTTTTGGCTTGTCATGTTTCCCCTAATCGTTTCTATTTGAAAAAGCTTCTAAAATTGATTGTTTTAAAGGACCACATTGGCCAGAATTTTTTCGTTTTTTTTTCTCAGAAAATTAATGGGAAGAAGTCATTAAAGTAAGTGACGGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTAAGAAACGGACAATAAATAAAGAGGCTGGAGTACTAGTAGTTGTACTAGTACTACTAGACCCGTCAATTTTCGATTCACGGAAGTTGGCAAATTGCRTTTTTTTGGCTTGTCATGTTTCCCCTAATCGTTTCTATTTGAAAAAGCTTCTAAAATTGATTGTTTTAAAGGACCACATTGGCCAGAATTTTTTCGTTTTTTTTTCTCAGAAAATTAATGGGAAGAAGTCATTAAAGTAAGTGACGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37922</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>984953</contig_pos>
        <strand>+</strand>
        <context>CGGAGGGCCC[C/T]TCTASTAGAR</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTAGAAGGGCCGGCCTTTCTATTTTTCCGAACCCCTCTCGGAGGGCCC</left_flank>
        <right_flank>TCTAGTAGAGGGGCCCTTTTATTAATTTGGCCCTTCTTATACAGGTTTTA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATAGAGAAATAGTGCAATTTTTGTTTCTCGTGAGGAGAAAAACTTTAAAATTTATGAAATACAGAAAACATCAAAAATGCACATGTCGCTCTTTCGTTAGGATTTAGTGCATTATTTTTGAAATCTCAGTTTGGAATAACTCAGAGAGATTGTAAGATGGAAAATAAAGAAAACCGGAAATTGAAATTTGTATTGTTTTTTTTCGTGCAGAAAAAATATCTAGGTTAACAGGAAAACTTCAGAAATCAAAACATATCCTAAAATGAGAAAATCACATTTGAAGTATCCAGGTGGTGGACGAATAGTTTTTCTAGTCCTCCGCCTAGAACGCACAATCAAAAACATGCACAATCAAAATTTTCAAGGAGAGTTTTACCATTACCGATCAATTTTCCTCAGGTTTCAATTTATGAAAAAATTTAAAAAATTCTGATACCGTAAAACCTGTATTAGAAGGGCCGGCCTTTCTATTTTTCCGAACCCCTCTCGGAGGGCCCTTCTAGTAGAGGGGCCCTTTTATTAATTTGGCCCTTCTTATACAGGTTTTACGGTAAATAAAAAAATCGGAAATCAAATAACACACTTAACAGTTTGAATACGAATATTCAGTGCGCTGGCAGGGGACTAGAAAACTCCCGCTCGACTATTCGTCCACCGGACACCATTCTGGAAATATAAGTTTTCTTTTCGATGTGGTTTTCTTAGTTTAAAAGTTTTTCAAATCTCCAAAAATGAATATGTTCACTTTTCTGAACACGATAAAAAAAGGAAAATCACCGCCTCCACCTTTTGAGAAAGTTGGGAAAAAATGAAATAACCATTTCTCTATTATAATAAAATTTTTGGAAATTTTAAGCATTCATGGAATTCAATTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATCAAAATGTGTTAAAATTTATCTATTTTTCGAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAA</canonical>
            <polymorphic>ACATAGAGAAATAGTGCAATTTTTGTTTCTCGTGAGGAGAAAAACTTTAAAATTTATGAAATACAGAAAACATCAAAAATGCACATGTCGCTCTTTCGTTAGGATTTAGTGCATTATTTTTGAAATCTCAGTTTGGAATAACTCAGAGAGATTGTAAGATGGAAAATAAAGAAAACCGGAAATTGAAATTTGTATTGTTTTTTTTCGTGCAGAAAAAATATCTAGGTTAACAGGAAAACTTCAGAAATCAAAACATATCCTAAAATGAGAAAATCACATTTGAAGTATCCAGGTGGTGGACGAATAGTTTTTCTAGTCCTCCGCCTAGAACGCACAATCAAAAACATGCACAATCAAAATTTTCAAGGAGAGTTTTACCATTACCGATCAATTTTCCTCAGGTTTCAATTTATGAAAAAATTTAAAAAATTCTGATACCGTAAAACCTGTATTAGAAGGGCCGGCCTTTCTATTTTTCCGAACCCCTCTCGGAGGGCCCYTCTAGTAGAGGGGCCCTTTTATTAATTTGGCCCTTCTTATACAGGTTTTACGGTAAATAAAAAAATCGGAAATCAAATAACACACTTAACAGTTTGAATACGAATATTCAGTGCGCTGGCAGGGGACTAGAAAACTCCCGCTCGACTATTCGTCCACCGGACACCATTCTGGAAATATAAGTTTTCTTTTCGATGTGGTTTTCTTAGTTTAAAAGTTTTTCAAATCTCCAAAAATGAATATGTTCACTTTTCTGAACACGATAAAAAAAGGAAAATCACCGCCTCCACCTTTTGAGAAAGTTGGGAAAAAATGAAATAACCATTTCTCTATTATAATAAAATTTTTGGAAATTTTAAGCATTCATGGAATTCAATTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATCAAAATGTGTTAAAATTTATCTATTTTTCGAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCCTCAGGTTTCAATTTAT</pcr_primer_p1>
		<pcr_primer_p2>ACATATTCATTTTTGGAGATTTG</pcr_primer_p2>
		<pcr_amplicon_size>353</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCCTCAGGTTTCAATTTATGAAAAAATTTAAAAAATTCTGATACCGTAAAACCTGTATTAGAAGGGCCGGCCTTTCTATTTTTCCGAACCCCTCTCGGAGGGCCCTTCTAGTAGAGGGGCCCTTTTATTAATTTGGCCCTTCTTATACAGGTTTTACGGTAAATAAAAAAATCGGAAATCAAATAACACACTTAACAGTTTGAATACGAATATTCAGTGCGCTGGCAGGGGACTAGAAAACTCCCGCTCGACTATTCGTCCACCGGACACCATTCTGGAAATATAAGTTTTCTTTTCGATGTGGTTTTCTTAGTTTAAAAGTTTTTCAAATCTCCAAAAATGAATATGT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCCTCAGGTTTCAATTTATGAAAAAATTTAAAAAATTCTGATACCGTAAAACCTGTATTAGAAGGGCCGGCCTTTCTATTTTTCCGAACCCCTCTCGGAGGGCCCYTCTAGTAGAGGGGCCCTTTTATTAATTTGGCCCTTCTTATACAGGTTTTACGGTAAATAAAAAAATCGGAAATCAAATAACACACTTAACAGTTTGAATACGAATATTCAGTGCGCTGGCAGGGGACTAGAAAACTCCCGCTCGACTATTCGTCCACCGGACACCATTCTGGAAATATAAGTTTTCTTTTCGATGTGGTTTTCTTAGTTTAAAAGTTTTTCAAATCTCCAAAAATGAATATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37923</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>984958</contig_pos>
        <strand>+</strand>
        <context>GGCCCYTCTA[C/G]TAGARGGGCC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAAGGGCCGGCCTTTCTATTTTTCCGAACCCCTCTCGGAGGGCCCTTCTA</left_flank>
        <right_flank>TAGAGGGGCCCTTTTATTAATTTGGCCCTTCTTATACAGGTTTTACGGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAAATAGTGCAATTTTTGTTTCTCGTGAGGAGAAAAACTTTAAAATTTATGAAATACAGAAAACATCAAAAATGCACATGTCGCTCTTTCGTTAGGATTTAGTGCATTATTTTTGAAATCTCAGTTTGGAATAACTCAGAGAGATTGTAAGATGGAAAATAAAGAAAACCGGAAATTGAAATTTGTATTGTTTTTTTTCGTGCAGAAAAAATATCTAGGTTAACAGGAAAACTTCAGAAATCAAAACATATCCTAAAATGAGAAAATCACATTTGAAGTATCCAGGTGGTGGACGAATAGTTTTTCTAGTCCTCCGCCTAGAACGCACAATCAAAAACATGCACAATCAAAATTTTCAAGGAGAGTTTTACCATTACCGATCAATTTTCCTCAGGTTTCAATTTATGAAAAAATTTAAAAAATTCTGATACCGTAAAACCTGTATTAGAAGGGCCGGCCTTTCTATTTTTCCGAACCCCTCTCGGAGGGCCCTTCTAGTAGAGGGGCCCTTTTATTAATTTGGCCCTTCTTATACAGGTTTTACGGTAAATAAAAAAATCGGAAATCAAATAACACACTTAACAGTTTGAATACGAATATTCAGTGCGCTGGCAGGGGACTAGAAAACTCCCGCTCGACTATTCGTCCACCGGACACCATTCTGGAAATATAAGTTTTCTTTTCGATGTGGTTTTCTTAGTTTAAAAGTTTTTCAAATCTCCAAAAATGAATATGTTCACTTTTCTGAACACGATAAAAAAAGGAAAATCACCGCCTCCACCTTTTGAGAAAGTTGGGAAAAAATGAAATAACCATTTCTCTATTATAATAAAATTTTTGGAAATTTTAAGCATTCATGGAATTCAATTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATCAAAATGTGTTAAAATTTATCTATTTTTCGAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAATGAAG</canonical>
            <polymorphic>GAGAAATAGTGCAATTTTTGTTTCTCGTGAGGAGAAAAACTTTAAAATTTATGAAATACAGAAAACATCAAAAATGCACATGTCGCTCTTTCGTTAGGATTTAGTGCATTATTTTTGAAATCTCAGTTTGGAATAACTCAGAGAGATTGTAAGATGGAAAATAAAGAAAACCGGAAATTGAAATTTGTATTGTTTTTTTTCGTGCAGAAAAAATATCTAGGTTAACAGGAAAACTTCAGAAATCAAAACATATCCTAAAATGAGAAAATCACATTTGAAGTATCCAGGTGGTGGACGAATAGTTTTTCTAGTCCTCCGCCTAGAACGCACAATCAAAAACATGCACAATCAAAATTTTCAAGGAGAGTTTTACCATTACCGATCAATTTTCCTCAGGTTTCAATTTATGAAAAAATTTAAAAAATTCTGATACCGTAAAACCTGTATTAGAAGGGCCGGCCTTTCTATTTTTCCGAACCCCTCTCGGAGGGCCCTTCTASTAGAGGGGCCCTTTTATTAATTTGGCCCTTCTTATACAGGTTTTACGGTAAATAAAAAAATCGGAAATCAAATAACACACTTAACAGTTTGAATACGAATATTCAGTGCGCTGGCAGGGGACTAGAAAACTCCCGCTCGACTATTCGTCCACCGGACACCATTCTGGAAATATAAGTTTTCTTTTCGATGTGGTTTTCTTAGTTTAAAAGTTTTTCAAATCTCCAAAAATGAATATGTTCACTTTTCTGAACACGATAAAAAAAGGAAAATCACCGCCTCCACCTTTTGAGAAAGTTGGGAAAAAATGAAATAACCATTTCTCTATTATAATAAAATTTTTGGAAATTTTAAGCATTCATGGAATTCAATTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATCAAAATGTGTTAAAATTTATCTATTTTTCGAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAATGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>378 217 177 125 91 12</canonical_bands>
                <polymorphic_bands>378 302 217 91 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCCTCAGGTTTCAATTTAT</pcr_primer_p1>
		<pcr_primer_p2>ACATATTCATTTTTGGAGATTTG</pcr_primer_p2>
		<pcr_amplicon_size>353</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCCTCAGGTTTCAATTTATGAAAAAATTTAAAAAATTCTGATACCGTAAAACCTGTATTAGAAGGGCCGGCCTTTCTATTTTTCCGAACCCCTCTCGGAGGGCCCTTCTAGTAGAGGGGCCCTTTTATTAATTTGGCCCTTCTTATACAGGTTTTACGGTAAATAAAAAAATCGGAAATCAAATAACACACTTAACAGTTTGAATACGAATATTCAGTGCGCTGGCAGGGGACTAGAAAACTCCCGCTCGACTATTCGTCCACCGGACACCATTCTGGAAATATAAGTTTTCTTTTCGATGTGGTTTTCTTAGTTTAAAAGTTTTTCAAATCTCCAAAAATGAATATGT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCCTCAGGTTTCAATTTATGAAAAAATTTAAAAAATTCTGATACCGTAAAACCTGTATTAGAAGGGCCGGCCTTTCTATTTTTCCGAACCCCTCTCGGAGGGCCCTTCTASTAGAGGGGCCCTTTTATTAATTTGGCCCTTCTTATACAGGTTTTACGGTAAATAAAAAAATCGGAAATCAAATAACACACTTAACAGTTTGAATACGAATATTCAGTGCGCTGGCAGGGGACTAGAAAACTCCCGCTCGACTATTCGTCCACCGGACACCATTCTGGAAATATAAGTTTTCTTTTCGATGTGGTTTTCTTAGTTTAAAAGTTTTTCAAATCTCCAAAAATGAATATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37924</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>984963</contig_pos>
        <strand>+</strand>
        <context>YTCTASTAGA[A/G]GGGCCCTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCGGCCTTTCTATTTTTCCGAACCCCTCTCGGAGGGCCCTTCTAGTAGA</left_flank>
        <right_flank>GGGCCCTTTTATTAATTTGGCCCTTCTTATACAGGTTTTACGGTAAATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGTGCAATTTTTGTTTCTCGTGAGGAGAAAAACTTTAAAATTTATGAAATACAGAAAACATCAAAAATGCACATGTCGCTCTTTCGTTAGGATTTAGTGCATTATTTTTGAAATCTCAGTTTGGAATAACTCAGAGAGATTGTAAGATGGAAAATAAAGAAAACCGGAAATTGAAATTTGTATTGTTTTTTTTCGTGCAGAAAAAATATCTAGGTTAACAGGAAAACTTCAGAAATCAAAACATATCCTAAAATGAGAAAATCACATTTGAAGTATCCAGGTGGTGGACGAATAGTTTTTCTAGTCCTCCGCCTAGAACGCACAATCAAAAACATGCACAATCAAAATTTTCAAGGAGAGTTTTACCATTACCGATCAATTTTCCTCAGGTTTCAATTTATGAAAAAATTTAAAAAATTCTGATACCGTAAAACCTGTATTAGAAGGGCCGGCCTTTCTATTTTTCCGAACCCCTCTCGGAGGGCCCTTCTAGTAGAGGGGCCCTTTTATTAATTTGGCCCTTCTTATACAGGTTTTACGGTAAATAAAAAAATCGGAAATCAAATAACACACTTAACAGTTTGAATACGAATATTCAGTGCGCTGGCAGGGGACTAGAAAACTCCCGCTCGACTATTCGTCCACCGGACACCATTCTGGAAATATAAGTTTTCTTTTCGATGTGGTTTTCTTAGTTTAAAAGTTTTTCAAATCTCCAAAAATGAATATGTTCACTTTTCTGAACACGATAAAAAAAGGAAAATCACCGCCTCCACCTTTTGAGAAAGTTGGGAAAAAATGAAATAACCATTTCTCTATTATAATAAAATTTTTGGAAATTTTAAGCATTCATGGAATTCAATTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATCAAAATGTGTTAAAATTTATCTATTTTTCGAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAATGAAGAAAAT</canonical>
            <polymorphic>ATAGTGCAATTTTTGTTTCTCGTGAGGAGAAAAACTTTAAAATTTATGAAATACAGAAAACATCAAAAATGCACATGTCGCTCTTTCGTTAGGATTTAGTGCATTATTTTTGAAATCTCAGTTTGGAATAACTCAGAGAGATTGTAAGATGGAAAATAAAGAAAACCGGAAATTGAAATTTGTATTGTTTTTTTTCGTGCAGAAAAAATATCTAGGTTAACAGGAAAACTTCAGAAATCAAAACATATCCTAAAATGAGAAAATCACATTTGAAGTATCCAGGTGGTGGACGAATAGTTTTTCTAGTCCTCCGCCTAGAACGCACAATCAAAAACATGCACAATCAAAATTTTCAAGGAGAGTTTTACCATTACCGATCAATTTTCCTCAGGTTTCAATTTATGAAAAAATTTAAAAAATTCTGATACCGTAAAACCTGTATTAGAAGGGCCGGCCTTTCTATTTTTCCGAACCCCTCTCGGAGGGCCCTTCTAGTAGARGGGCCCTTTTATTAATTTGGCCCTTCTTATACAGGTTTTACGGTAAATAAAAAAATCGGAAATCAAATAACACACTTAACAGTTTGAATACGAATATTCAGTGCGCTGGCAGGGGACTAGAAAACTCCCGCTCGACTATTCGTCCACCGGACACCATTCTGGAAATATAAGTTTTCTTTTCGATGTGGTTTTCTTAGTTTAAAAGTTTTTCAAATCTCCAAAAATGAATATGTTCACTTTTCTGAACACGATAAAAAAAGGAAAATCACCGCCTCCACCTTTTGAGAAAGTTGGGAAAAAATGAAATAACCATTTCTCTATTATAATAAAATTTTTGGAAATTTTAAGCATTCATGGAATTCAATTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATCAAAATGTGTTAAAATTTATCTATTTTTCGAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAATGAAGAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>498 486 16</canonical_bands>
                <polymorphic_bands>497 486 17</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>499 484 17</canonical_bands>
                <polymorphic_bands>498 484 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCCTCAGGTTTCAATTTAT</pcr_primer_p1>
		<pcr_primer_p2>ACATATTCATTTTTGGAGATTTG</pcr_primer_p2>
		<pcr_amplicon_size>353</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCCTCAGGTTTCAATTTATGAAAAAATTTAAAAAATTCTGATACCGTAAAACCTGTATTAGAAGGGCCGGCCTTTCTATTTTTCCGAACCCCTCTCGGAGGGCCCTTCTAGTAGAGGGGCCCTTTTATTAATTTGGCCCTTCTTATACAGGTTTTACGGTAAATAAAAAAATCGGAAATCAAATAACACACTTAACAGTTTGAATACGAATATTCAGTGCGCTGGCAGGGGACTAGAAAACTCCCGCTCGACTATTCGTCCACCGGACACCATTCTGGAAATATAAGTTTTCTTTTCGATGTGGTTTTCTTAGTTTAAAAGTTTTTCAAATCTCCAAAAATGAATATGT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCCTCAGGTTTCAATTTATGAAAAAATTTAAAAAATTCTGATACCGTAAAACCTGTATTAGAAGGGCCGGCCTTTCTATTTTTCCGAACCCCTCTCGGAGGGCCCTTCTAGTAGARGGGCCCTTTTATTAATTTGGCCCTTCTTATACAGGTTTTACGGTAAATAAAAAAATCGGAAATCAAATAACACACTTAACAGTTTGAATACGAATATTCAGTGCGCTGGCAGGGGACTAGAAAACTCCCGCTCGACTATTCGTCCACCGGACACCATTCTGGAAATATAAGTTTTCTTTTCGATGTGGTTTTCTTAGTTTAAAAGTTTTTCAAATCTCCAAAAATGAATATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37925</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>985045</contig_pos>
        <strand></strand>
        <context>acacttaaca[G/A]tttgaatacg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAGGTTTTACGGTAAATAAAAAAATCGGAAATCAAATAACACACTTAACA</left_flank>
        <right_flank>TTTGAATACGAATATTCAGTGCGCTGGCAGGGGACTAGAAAACTCCCGCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTCGTTAGGATTTAGTGCATTATTTTTGAAATCTCAGTTTGGAATAACTCAGAGAGATTGTAAGATGGAAAATAAAGAAAACCGGAAATTGAAATTTGTATTGTTTTTTTTCGTGCAGAAAAAATATCTAGGTTAACAGGAAAACTTCAGAAATCAAAACATATCCTAAAATGAGAAAATCACATTTGAAGTATCCAGGTGGTGGACGAATAGTTTTTCTAGTCCTCCGCCTAGAACGCACAATCAAAAACATGCACAATCAAAATTTTCAAGGAGAGTTTTACCATTACCGATCAATTTTCCTCAGGTTTCAATTTATGAAAAAATTTAAAAAATTCTGATACCGTAAAACCTGTATTAGAAGGGCCGGCCTTTCTATTTTTCCGAACCCCTCTCGGAGGGCCCTTCTAGTAGAGGGGCCCTTTTATTAATTTGGCCCTTCTTATACAGGTTTTACGGTAAATAAAAAAATCGGAAATCAAATAACACACTTAACAGTTTGAATACGAATATTCAGTGCGCTGGCAGGGGACTAGAAAACTCCCGCTCGACTATTCGTCCACCGGACACCATTCTGGAAATATAAGTTTTCTTTTCGATGTGGTTTTCTTAGTTTAAAAGTTTTTCAAATCTCCAAAAATGAATATGTTCACTTTTCTGAACACGATAAAAAAAGGAAAATCACCGCCTCCACCTTTTGAGAAAGTTGGGAAAAAATGAAATAACCATTTCTCTATTATAATAAAATTTTTGGAAATTTTAAGCATTCATGGAATTCAATTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATCAAAATGTGTTAAAATTTATCTATTTTTCGAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAATGAAGAAAATTCAAAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACTACACCTGACAGCCTTTTTTTCAAGT</canonical>
            <polymorphic>CTTTCGTTAGGATTTAGTGCATTATTTTTGAAATCTCAGTTTGGAATAACTCAGAGAGATTGTAAGATGGAAAATAAAGAAAACCGGAAATTGAAATTTGTATTGTTTTTTTTCGTGCAGAAAAAATATCTAGGTTAACAGGAAAACTTCAGAAATCAAAACATATCCTAAAATGAGAAAATCACATTTGAAGTATCCAGGTGGTGGACGAATAGTTTTTCTAGTCCTCCGCCTAGAACGCACAATCAAAAACATGCACAATCAAAATTTTCAAGGAGAGTTTTACCATTACCGATCAATTTTCCTCAGGTTTCAATTTATGAAAAAATTTAAAAAATTCTGATACCGTAAAACCTGTATTAGAAGGGCCGGCCTTTCTATTTTTCCGAACCCCTCTCGGAGGGCCCTTCTAGTAGAGGGGCCCTTTTATTAATTTGGCCCTTCTTATACAGGTTTTACGGTAAATAAAAAAATCGGAAATCAAATAACACACTTAACARTTTGAATACGAATATTCAGTGCGCTGGCAGGGGACTAGAAAACTCCCGCTCGACTATTCGTCCACCGGACACCATTCTGGAAATATAAGTTTTCTTTTCGATGTGGTTTTCTTAGTTTAAAAGTTTTTCAAATCTCCAAAAATGAATATGTTCACTTTTCTGAACACGATAAAAAAAGGAAAATCACCGCCTCCACCTTTTGAGAAAGTTGGGAAAAAATGAAATAACCATTTCTCTATTATAATAAAATTTTTGGAAATTTTAAGCATTCATGGAATTCAATTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATCAAAATGTGTTAAAATTTATCTATTTTTCGAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAATGAAGAAAATTCAAAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACTACACCTGACAGCCTTTTTTTCAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 347 113 39</canonical_bands>
                <polymorphic_bands>540 347 113</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTATTAATTTGGCCCTTCTTAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTATCGTGTTCAGAAAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTATTAATTTGGCCCTTCTTATACAGGTTTTACGGTAAATAAAAAAATCGGAAATCAAATAACACACTTAACAGTTTGAATACGAATATTCAGTGCGCTGGCAGGGGACTAGAAAACTCCCGCTCGACTATTCGTCCACCGGACACCATTCTGGAAATATAAGTTTTCTTTTCGATGTGGTTTTCTTAGTTTAAAAGTTTTTCAAATCTCCAAAAATGAATATGTTCACTTTTCTGAACACGATAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTATTAATTTGGCCCTTCTTATACAGGTTTTACGGTAAATAAAAAAATCGGAAATCAAATAACACACTTAACARTTTGAATACGAATATTCAGTGCGCTGGCAGGGGACTAGAAAACTCCCGCTCGACTATTCGTCCACCGGACACCATTCTGGAAATATAAGTTTTCTTTTCGATGTGGTTTTCTTAGTTTAAAAGTTTTTCAAATCTCCAAAAATGAATATGTTCACTTTTCTGAACACGATAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37926</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>985081</contig_pos>
        <strand></strand>
        <context>ggcaggggac[T/A]agaaaactcc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TAACACACTTAACAGTTTGAATACGAATATTCAGTGCGCTGGCAGGGGAC</left_flank>
        <right_flank>AGAAAACTCCCGCTCGACTATTCGTCCACCGGACACCATTCTGGAAATAT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTTTGGAATAACTCAGAGAGATTGTAAGATGGAAAATAAAGAAAACCGGAAATTGAAATTTGTATTGTTTTTTTTCGTGCAGAAAAAATATCTAGGTTAACAGGAAAACTTCAGAAATCAAAACATATCCTAAAATGAGAAAATCACATTTGAAGTATCCAGGTGGTGGACGAATAGTTTTTCTAGTCCTCCGCCTAGAACGCACAATCAAAAACATGCACAATCAAAATTTTCAAGGAGAGTTTTACCATTACCGATCAATTTTCCTCAGGTTTCAATTTATGAAAAAATTTAAAAAATTCTGATACCGTAAAACCTGTATTAGAAGGGCCGGCCTTTCTATTTTTCCGAACCCCTCTCGGAGGGCCCTTCTAGTAGAGGGGCCCTTTTATTAATTTGGCCCTTCTTATACAGGTTTTACGGTAAATAAAAAAATCGGAAATCAAATAACACACTTAACAGTTTGAATACGAATATTCAGTGCGCTGGCAGGGGACTAGAAAACTCCCGCTCGACTATTCGTCCACCGGACACCATTCTGGAAATATAAGTTTTCTTTTCGATGTGGTTTTCTTAGTTTAAAAGTTTTTCAAATCTCCAAAAATGAATATGTTCACTTTTCTGAACACGATAAAAAAAGGAAAATCACCGCCTCCACCTTTTGAGAAAGTTGGGAAAAAATGAAATAACCATTTCTCTATTATAATAAAATTTTTGGAAATTTTAAGCATTCATGGAATTCAATTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATCAAAATGTGTTAAAATTTATCTATTTTTCGAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAATGAAGAAAATTCAAAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACTACACCTGACAGCCTTTTTTTCAAGTCACCGACAGTGGTTTTTTACGTTTTTTACCTGCCGG</canonical>
            <polymorphic>CAGTTTGGAATAACTCAGAGAGATTGTAAGATGGAAAATAAAGAAAACCGGAAATTGAAATTTGTATTGTTTTTTTTCGTGCAGAAAAAATATCTAGGTTAACAGGAAAACTTCAGAAATCAAAACATATCCTAAAATGAGAAAATCACATTTGAAGTATCCAGGTGGTGGACGAATAGTTTTTCTAGTCCTCCGCCTAGAACGCACAATCAAAAACATGCACAATCAAAATTTTCAAGGAGAGTTTTACCATTACCGATCAATTTTCCTCAGGTTTCAATTTATGAAAAAATTTAAAAAATTCTGATACCGTAAAACCTGTATTAGAAGGGCCGGCCTTTCTATTTTTCCGAACCCCTCTCGGAGGGCCCTTCTAGTAGAGGGGCCCTTTTATTAATTTGGCCCTTCTTATACAGGTTTTACGGTAAATAAAAAAATCGGAAATCAAATAACACACTTAACAGTTTGAATACGAATATTCAGTGCGCTGGCAGGGGACWAGAAAACTCCCGCTCGACTATTCGTCCACCGGACACCATTCTGGAAATATAAGTTTTCTTTTCGATGTGGTTTTCTTAGTTTAAAAGTTTTTCAAATCTCCAAAAATGAATATGTTCACTTTTCTGAACACGATAAAAAAAGGAAAATCACCGCCTCCACCTTTTGAGAAAGTTGGGAAAAAATGAAATAACCATTTCTCTATTATAATAAAATTTTTGGAAATTTTAAGCATTCATGGAATTCAATTTAAAGGGGGACTCCGACCAAAAATTTTTATTGCATCAAAATGTGTTAAAATTTATCTATTTTTCGAATATTATTGCGAAAAAATTCAAAGAAAATCCGAAATCCCCGAAAAACGGCGTTGAAAATGAAGAAAATTCAAAAAAAAAGGTGCCGCCGGGGGACGAGGATTTTCAGTGAGAAACCTAGGCCACTACACCTGACAGCCTTTTTTTCAAGTCACCGACAGTGGTTTTTTACGTTTTTTACCTGCCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>431 177 125 94 91 70 12</canonical_bands>
                <polymorphic_bands>556 177 94 91 70 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTATTAATTTGGCCCTTCTTAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTATCGTGTTCAGAAAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTATTAATTTGGCCCTTCTTATACAGGTTTTACGGTAAATAAAAAAATCGGAAATCAAATAACACACTTAACAGTTTGAATACGAATATTCAGTGCGCTGGCAGGGGACTAGAAAACTCCCGCTCGACTATTCGTCCACCGGACACCATTCTGGAAATATAAGTTTTCTTTTCGATGTGGTTTTCTTAGTTTAAAAGTTTTTCAAATCTCCAAAAATGAATATGTTCACTTTTCTGAACACGATAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTATTAATTTGGCCCTTCTTATACAGGTTTTACGGTAAATAAAAAAATCGGAAATCAAATAACACACTTAACAGTTTGAATACGAATATTCAGTGCGCTGGCAGGGGACWAGAAAACTCCCGCTCGACTATTCGTCCACCGGACACCATTCTGGAAATATAAGTTTTCTTTTCGATGTGGTTTTCTTAGTTTAAAAGTTTTTCAAATCTCCAAAAATGAATATGTTCACTTTTCTGAACACGATAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37927</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>986728</contig_pos>
        <strand>+</strand>
        <context>TTCTGAGAAC[A/G]CGAAGAACAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTTGTGTCTGTGTCTAGTGTTTGGCAGTATTTTCCTTTATTCTGAGAAC</left_flank>
        <right_flank>CGAAGAACACCTATGAGAACTCCCAAACCAAAATCAAAATCCCCAAGGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAACATGGGACCGCTGCGAAAAAAAAAACACTACGCTACGGGAGAAGAACTCTTCCGCATCCAGGAAGAGGCGGGAAAAAAACCCGGGAGTCTACTAATAAGTCGATGTAATTCGATAGGAGAAGAAAATGCTTCATACTCTTTCCCCCCTATTTTGCCTCCTACTCATCCGTCCACACTTCATTTCTTTTCCTTGTCTTCTCTTTTTTCTATTCAACTTTTTTTTCCAATTTTCTCTGCATCTGACACCGCTGTTCAAATCCAATGTTTTATACATAATTTTTTTTTCCAAATTTTCACCTGCCTTATTTCTCAGATTTTGATTAAAAGACCGGCTCAAAAAAAAAGTTGATAGAGGTGTGAGTGAGAGCCGACCTCTTTTTTTCGAAGTTTTATGGATATTGGGTAACCTTATCACCTGGCTAAAAAAAAGAAAAATGTAGAGGTGCTTGTGTCTGTGTCTAGTGTTTGGCAGTATTTTCCTTTATTCTGAGAACACGAAGAACACCTATGAGAACTCCCAAACCAAAATCAAAATCCCCAAGGACCCCGAAAATTGTTATTACCGGTTAGTTTGTTTTTCGAAAGAAAAAATTAGAGGGAACAGGAGAATTCAAGGCGTTAATAAATTTTTTGCGGTTATCAAAAAACAATAGGGAGTTAGTTTTTTTTATTGGATTCTGTATAGCAACTGAACACTTTTTAAGAACAAATTTGAAAATTTGGAAAAATGAAACCAAATTGAAATTATTCCAAACAAGAATCCAAGGTTGCATGTTTGACCATCATTTGCGAATCCGTGTTGACATCCCTTGTCCATCCTTTCTCCTTTTTCTTGAAGTTAATTTTGGTTTTCATGAATTCTCAATTTTCAATTCTCCAAATTATGATATATCTATGATTCAATACTTTTGAAACAAAAGTTGCTGATCCAAACACGTTTTGCACTAGAAACCGGATGGTTAAGGGGGTGTCACAGCCAATTTCCGTTTAGCCAG</canonical>
            <polymorphic>AATAACATGGGACCGCTGCGAAAAAAAAAACACTACGCTACGGGAGAAGAACTCTTCCGCATCCAGGAAGAGGCGGGAAAAAAACCCGGGAGTCTACTAATAAGTCGATGTAATTCGATAGGAGAAGAAAATGCTTCATACTCTTTCCCCCCTATTTTGCCTCCTACTCATCCGTCCACACTTCATTTCTTTTCCTTGTCTTCTCTTTTTTCTATTCAACTTTTTTTTCCAATTTTCTCTGCATCTGACACCGCTGTTCAAATCCAATGTTTTATACATAATTTTTTTTTCCAAATTTTCACCTGCCTTATTTCTCAGATTTTGATTAAAAGACCGGCTCAAAAAAAAAGTTGATAGAGGTGTGAGTGAGAGCCGACCTCTTTTTTTCGAAGTTTTATGGATATTGGGTAACCTTATCACCTGGCTAAAAAAAAGAAAAATGTAGAGGTGCTTGTGTCTGTGTCTAGTGTTTGGCAGTATTTTCCTTTATTCTGAGAACRCGAAGAACACCTATGAGAACTCCCAAACCAAAATCAAAATCCCCAAGGACCCCGAAAATTGTTATTACCGGTTAGTTTGTTTTTCGAAAGAAAAAATTAGAGGGAACAGGAGAATTCAAGGCGTTAATAAATTTTTTGCGGTTATCAAAAAACAATAGGGAGTTAGTTTTTTTTATTGGATTCTGTATAGCAACTGAACACTTTTTAAGAACAAATTTGAAAATTTGGAAAAATGAAACCAAATTGAAATTATTCCAAACAAGAATCCAAGGTTGCATGTTTGACCATCATTTGCGAATCCGTGTTGACATCCCTTGTCCATCCTTTCTCCTTTTTCTTGAAGTTAATTTTGGTTTTCATGAATTCTCAATTTTCAATTCTCCAAATTATGATATATCTATGATTCAATACTTTTGAAACAAAAGTTGCTGATCCAAACACGTTTTGCACTAGAAACCGGATGGTTAAGGGGGTGTCACAGCCAATTTCCGTTTAGCCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>191 146 136 104 70 61 51 51 32 31 31 26 22 9 9 7 6 6 4 3 2 2</canonical_bands>
                <polymorphic_bands>191 146 136 104 70 61 51 51 40 32 31 26 22 9 7 6 6 4 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCGAAGTTTTATGGATATTG</pcr_primer_p1>
		<pcr_primer_p2>ATTTATTAACGCCTTGAATTCTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTCGAAGTTTTATGGATATTGGGTAACCTTATCACCTGGCTAAAAAAAAGAAAAATGTAGAGGTGCTTGTGTCTGTGTCTAGTGTTTGGCAGTATTTTCCTTTATTCTGAGAACACGAAGAACACCTATGAGAACTCCCAAACCAAAATCAAAATCCCCAAGGACCCCGAAAATTGTTATTACCGGTTAGTTTGTTTTTCGAAAGAAAAAATTAGAGGGAACAGGAGAATTCAAGGCGTTAATAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCGAAGTTTTATGGATATTGGGTAACCTTATCACCTGGCTAAAAAAAAGAAAAATGTAGAGGTGCTTGTGTCTGTGTCTAGTGTTTGGCAGTATTTTCCTTTATTCTGAGAACRCGAAGAACACCTATGAGAACTCCCAAACCAAAATCAAAATCCCCAAGGACCCCGAAAATTGTTATTACCGGTTAGTTTGTTTTTCGAAAGAAAAAATTAGAGGGAACAGGAGAATTCAAGGCGTTAATAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37928</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>986739</contig_pos>
        <strand>+</strand>
        <context>CGAAGAACAC[C/T]TATGAGAACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTCTAGTGTTTGGCAGTATTTTCCTTTATTCTGAGAACACGAAGAACAC</left_flank>
        <right_flank>TATGAGAACTCCCAAACCAAAATCAAAATCCCCAAGGACCCCGAAAATTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCGCTGCGAAAAAAAAAACACTACGCTACGGGAGAAGAACTCTTCCGCATCCAGGAAGAGGCGGGAAAAAAACCCGGGAGTCTACTAATAAGTCGATGTAATTCGATAGGAGAAGAAAATGCTTCATACTCTTTCCCCCCTATTTTGCCTCCTACTCATCCGTCCACACTTCATTTCTTTTCCTTGTCTTCTCTTTTTTCTATTCAACTTTTTTTTCCAATTTTCTCTGCATCTGACACCGCTGTTCAAATCCAATGTTTTATACATAATTTTTTTTTCCAAATTTTCACCTGCCTTATTTCTCAGATTTTGATTAAAAGACCGGCTCAAAAAAAAAGTTGATAGAGGTGTGAGTGAGAGCCGACCTCTTTTTTTCGAAGTTTTATGGATATTGGGTAACCTTATCACCTGGCTAAAAAAAAGAAAAATGTAGAGGTGCTTGTGTCTGTGTCTAGTGTTTGGCAGTATTTTCCTTTATTCTGAGAACACGAAGAACACCTATGAGAACTCCCAAACCAAAATCAAAATCCCCAAGGACCCCGAAAATTGTTATTACCGGTTAGTTTGTTTTTCGAAAGAAAAAATTAGAGGGAACAGGAGAATTCAAGGCGTTAATAAATTTTTTGCGGTTATCAAAAAACAATAGGGAGTTAGTTTTTTTTATTGGATTCTGTATAGCAACTGAACACTTTTTAAGAACAAATTTGAAAATTTGGAAAAATGAAACCAAATTGAAATTATTCCAAACAAGAATCCAAGGTTGCATGTTTGACCATCATTTGCGAATCCGTGTTGACATCCCTTGTCCATCCTTTCTCCTTTTTCTTGAAGTTAATTTTGGTTTTCATGAATTCTCAATTTTCAATTCTCCAAATTATGATATATCTATGATTCAATACTTTTGAAACAAAAGTTGCTGATCCAAACACGTTTTGCACTAGAAACCGGATGGTTAAGGGGGTGTCACAGCCAATTTCCGTTTAGCCAGAGACGGGCACT</canonical>
            <polymorphic>ACCGCTGCGAAAAAAAAAACACTACGCTACGGGAGAAGAACTCTTCCGCATCCAGGAAGAGGCGGGAAAAAAACCCGGGAGTCTACTAATAAGTCGATGTAATTCGATAGGAGAAGAAAATGCTTCATACTCTTTCCCCCCTATTTTGCCTCCTACTCATCCGTCCACACTTCATTTCTTTTCCTTGTCTTCTCTTTTTTCTATTCAACTTTTTTTTCCAATTTTCTCTGCATCTGACACCGCTGTTCAAATCCAATGTTTTATACATAATTTTTTTTTCCAAATTTTCACCTGCCTTATTTCTCAGATTTTGATTAAAAGACCGGCTCAAAAAAAAAGTTGATAGAGGTGTGAGTGAGAGCCGACCTCTTTTTTTCGAAGTTTTATGGATATTGGGTAACCTTATCACCTGGCTAAAAAAAAGAAAAATGTAGAGGTGCTTGTGTCTGTGTCTAGTGTTTGGCAGTATTTTCCTTTATTCTGAGAACACGAAGAACACYTATGAGAACTCCCAAACCAAAATCAAAATCCCCAAGGACCCCGAAAATTGTTATTACCGGTTAGTTTGTTTTTCGAAAGAAAAAATTAGAGGGAACAGGAGAATTCAAGGCGTTAATAAATTTTTTGCGGTTATCAAAAAACAATAGGGAGTTAGTTTTTTTTATTGGATTCTGTATAGCAACTGAACACTTTTTAAGAACAAATTTGAAAATTTGGAAAAATGAAACCAAATTGAAATTATTCCAAACAAGAATCCAAGGTTGCATGTTTGACCATCATTTGCGAATCCGTGTTGACATCCCTTGTCCATCCTTTCTCCTTTTTCTTGAAGTTAATTTTGGTTTTCATGAATTCTCAATTTTCAATTCTCCAAATTATGATATATCTATGATTCAATACTTTTGAAACAAAAGTTGCTGATCCAAACACGTTTTGCACTAGAAACCGGATGGTTAAGGGGGTGTCACAGCCAATTTCCGTTTAGCCAGAGACGGGCACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCGAAGTTTTATGGATATTG</pcr_primer_p1>
		<pcr_primer_p2>ATTTATTAACGCCTTGAATTCTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTCGAAGTTTTATGGATATTGGGTAACCTTATCACCTGGCTAAAAAAAAGAAAAATGTAGAGGTGCTTGTGTCTGTGTCTAGTGTTTGGCAGTATTTTCCTTTATTCTGAGAACACGAAGAACACCTATGAGAACTCCCAAACCAAAATCAAAATCCCCAAGGACCCCGAAAATTGTTATTACCGGTTAGTTTGTTTTTCGAAAGAAAAAATTAGAGGGAACAGGAGAATTCAAGGCGTTAATAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCGAAGTTTTATGGATATTGGGTAACCTTATCACCTGGCTAAAAAAAAGAAAAATGTAGAGGTGCTTGTGTCTGTGTCTAGTGTTTGGCAGTATTTTCCTTTATTCTGAGAACACGAAGAACACYTATGAGAACTCCCAAACCAAAATCAAAATCCCCAAGGACCCCGAAAATTGTTATTACCGGTTAGTTTGTTTTTCGAAAGAAAAAATTAGAGGGAACAGGAGAATTCAAGGCGTTAATAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37929</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1053475</contig_pos>
        <strand>+</strand>
        <context>CTGACCTCTA[A/G]TTTTTTGGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTCATGTTTTTCCAGAAGGATACAAATGGTTTTTGATCACTGACCTCTA</left_flank>
        <right_flank>TTTTTTGGAAGCTTCGAAAAAATTATTGATCGATGGGACATTCAGAAGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAAAGTGAAAATTGGTTTTGAGACCAGTAACCTAGTACCTCATAGGTTCTACATATTACTTCATTTCAAAGTCTGGAATTTTTCACTAATTTTCGACACGATTACCAACGATTGTAGTTCCCTTTTTTCGGATTACGATAACTAGAGTTGCGGAAAGTTGCAAAATTTGTAACAACGTTTAAACAATATGTAAAAGATTTGTGAAAAATGTATTCAGATATCCGAAAACCTGCGCTTCGAAATACTCCAACTGTTTTCTAACATAACCTCTCCTAAAATATTAGGAAGATCTAATTTTGACGGACATAATAGTCTGGTCCAAAAAACTGGACCAGTTACAAAACTAAGATTATCGGAACATTAAGGAGATGCGCACGATATGGGAAAAGCAAGGGAAATGAAAAGCAGGAAGACTGTGGAGTGATTTGACGGTCAGAGGCCTAGTGACTCATGTTTTTCCAGAAGGATACAAATGGTTTTTGATCACTGACCTCTATTTTTTTGGAAGCTTCGAAAAAATTATTGATCGATGGGACATTCAGAAGTAGCGAAAAATTTGCTGAACCGCCGATAAAATGAGCAATACAGTAGCCCGCGTTACAGTAACCAACAAAAAAATAAAACTAATCCCTGATAGAACTCACAATAGAATTCAGAGTGCAGAAAGTTTAAAATTTCTATGTTTTCTTATATTTTCGAGGCGCATAAAATTTCCTAATTTTGCTAACACCGTTTTCTGAACTTTGAAAACAATCGAAAATAATGTTTTTCATTGAAAAAAATAAAATGAATCAATCATGACTGGAAATGCCTTAATGAACGATTTGAAAAACCGAGAATAGTGAAATCTAGAAATAAAAATAATATGCGAAAATCGAGAGAACTGAGAAGCAGGAAAAGATAGGAGTGATTTGACAGTCGGCAGCCTAGTGACTCATATTGTTCCAGAACAATTCGAATGGTTTTTGATCACTGATCTCGATGGATGCATTCGTGT</canonical>
            <polymorphic>GAAAAAAGTGAAAATTGGTTTTGAGACCAGTAACCTAGTACCTCATAGGTTCTACATATTACTTCATTTCAAAGTCTGGAATTTTTCACTAATTTTCGACACGATTACCAACGATTGTAGTTCCCTTTTTTCGGATTACGATAACTAGAGTTGCGGAAAGTTGCAAAATTTGTAACAACGTTTAAACAATATGTAAAAGATTTGTGAAAAATGTATTCAGATATCCGAAAACCTGCGCTTCGAAATACTCCAACTGTTTTCTAACATAACCTCTCCTAAAATATTAGGAAGATCTAATTTTGACGGACATAATAGTCTGGTCCAAAAAACTGGACCAGTTACAAAACTAAGATTATCGGAACATTAAGGAGATGCGCACGATATGGGAAAAGCAAGGGAAATGAAAAGCAGGAAGACTGTGGAGTGATTTGACGGTCAGAGGCCTAGTGACTCATGTTTTTCCAGAAGGATACAAATGGTTTTTGATCACTGACCTCTARTTTTTTGGAAGCTTCGAAAAAATTATTGATCGATGGGACATTCAGAAGTAGCGAAAAATTTGCTGAACCGCCGATAAAATGAGCAATACAGTAGCCCGCGTTACAGTAACCAACAAAAAAATAAAACTAATCCCTGATAGAACTCACAATAGAATTCAGAGTGCAGAAAGTTTAAAATTTCTATGTTTTCTTATATTTTCGAGGCGCATAAAATTTCCTAATTTTGCTAACACCGTTTTCTGAACTTTGAAAACAATCGAAAATAATGTTTTTCATTGAAAAAAATAAAATGAATCAATCATGACTGGAAATGCCTTAATGAACGATTTGAAAAACCGAGAATAGTGAAATCTAGAAATAAAAATAATATGCGAAAATCGAGAGAACTGAGAAGCAGGAAAAGATAGGAGTGATTTGACAGTCGGCAGCCTAGTGACTCATATTGTTCCAGAACAATTCGAATGGTTTTTGATCACTGATCTCGATGGATGCATTCGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTATCGGAACATTAAGGAGAT</pcr_primer_p1>
		<pcr_primer_p2>GGCTACTGTATTGCTCATTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GATTATCGGAACATTAAGGAGATGCGCACGATATGGGAAAAGCAAGGGAAATGAAAAGCAGGAAGACTGTGGAGTGATTTGACGGTCAGAGGCCTAGTGACTCATGTTTTTCCAGAAGGATACAAATGGTTTTTGATCACTGACCTCTATTTTTTTGGAAGCTTCGAAAAAATTATTGATCGATGGGACATTCAGAAGTAGCGAAAAATTTGCTGAACCGCCGATAAAATGAGCAATACAGTAGCC</canonical_amplicon>
		<polymorphic_amplicon>GATTATCGGAACATTAAGGAGATGCGCACGATATGGGAAAAGCAAGGGAAATGAAAAGCAGGAAGACTGTGGAGTGATTTGACGGTCAGAGGCCTAGTGACTCATGTTTTTCCAGAAGGATACAAATGGTTTTTGATCACTGACCTCTARTTTTTTGGAAGCTTCGAAAAAATTATTGATCGATGGGACATTCAGAAGTAGCGAAAAATTTGCTGAACCGCCGATAAAATGAGCAATACAGTAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37930</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1053633</contig_pos>
        <strand>+</strand>
        <context>AATAGAATTC[A/G]GAGTGCAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACCAACAAAAAAATAAAACTAATCCCTGATAGAACTCACAATAGAATTC</left_flank>
        <right_flank>GAGTGCAGAAAGTTTAAAATTTCTATGTTTTCTTATATTTTCGAGGCGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTGCAAAATTTGTAACAACGTTTAAACAATATGTAAAAGATTTGTGAAAAATGTATTCAGATATCCGAAAACCTGCGCTTCGAAATACTCCAACTGTTTTCTAACATAACCTCTCCTAAAATATTAGGAAGATCTAATTTTGACGGACATAATAGTCTGGTCCAAAAAACTGGACCAGTTACAAAACTAAGATTATCGGAACATTAAGGAGATGCGCACGATATGGGAAAAGCAAGGGAAATGAAAAGCAGGAAGACTGTGGAGTGATTTGACGGTCAGAGGCCTAGTGACTCATGTTTTTCCAGAAGGATACAAATGGTTTTTGATCACTGACCTCTATTTTTTTGGAAGCTTCGAAAAAATTATTGATCGATGGGACATTCAGAAGTAGCGAAAAATTTGCTGAACCGCCGATAAAATGAGCAATACAGTAGCCCGCGTTACAGTAACCAACAAAAAAATAAAACTAATCCCTGATAGAACTCACAATAGAATTCAGAGTGCAGAAAGTTTAAAATTTCTATGTTTTCTTATATTTTCGAGGCGCATAAAATTTCCTAATTTTGCTAACACCGTTTTCTGAACTTTGAAAACAATCGAAAATAATGTTTTTCATTGAAAAAAATAAAATGAATCAATCATGACTGGAAATGCCTTAATGAACGATTTGAAAAACCGAGAATAGTGAAATCTAGAAATAAAAATAATATGCGAAAATCGAGAGAACTGAGAAGCAGGAAAAGATAGGAGTGATTTGACAGTCGGCAGCCTAGTGACTCATATTGTTCCAGAACAATTCGAATGGTTTTTGATCACTGATCTCGATGGATGCATTCGTGTCGATTTACGAAGCTCCGTCAAAAAACTGATACTGTAAAAAGCAAATTTAATACATGCGAATTAGGTCGAATGTGTTCTGAACCAAAGTTAGAATTTTTCGTAAAATGTGATAGCTAGCATCTCTAGAATCCTGTTTTGAATTGAATGTATTCTTCCAA</canonical>
            <polymorphic>AGTTGCAAAATTTGTAACAACGTTTAAACAATATGTAAAAGATTTGTGAAAAATGTATTCAGATATCCGAAAACCTGCGCTTCGAAATACTCCAACTGTTTTCTAACATAACCTCTCCTAAAATATTAGGAAGATCTAATTTTGACGGACATAATAGTCTGGTCCAAAAAACTGGACCAGTTACAAAACTAAGATTATCGGAACATTAAGGAGATGCGCACGATATGGGAAAAGCAAGGGAAATGAAAAGCAGGAAGACTGTGGAGTGATTTGACGGTCAGAGGCCTAGTGACTCATGTTTTTCCAGAAGGATACAAATGGTTTTTGATCACTGACCTCTATTTTTTTGGAAGCTTCGAAAAAATTATTGATCGATGGGACATTCAGAAGTAGCGAAAAATTTGCTGAACCGCCGATAAAATGAGCAATACAGTAGCCCGCGTTACAGTAACCAACAAAAAAATAAAACTAATCCCTGATAGAACTCACAATAGAATTCRGAGTGCAGAAAGTTTAAAATTTCTATGTTTTCTTATATTTTCGAGGCGCATAAAATTTCCTAATTTTGCTAACACCGTTTTCTGAACTTTGAAAACAATCGAAAATAATGTTTTTCATTGAAAAAAATAAAATGAATCAATCATGACTGGAAATGCCTTAATGAACGATTTGAAAAACCGAGAATAGTGAAATCTAGAAATAAAAATAATATGCGAAAATCGAGAGAACTGAGAAGCAGGAAAAGATAGGAGTGATTTGACAGTCGGCAGCCTAGTGACTCATATTGTTCCAGAACAATTCGAATGGTTTTTGATCACTGATCTCGATGGATGCATTCGTGTCGATTTACGAAGCTCCGTCAAAAAACTGATACTGTAAAAAGCAAATTTAATACATGCGAATTAGGTCGAATGTGTTCTGAACCAAAGTTAGAATTTTTCGTAAAATGTGATAGCTAGCATCTCTAGAATCCTGTTTTGAATTGAATGTATTCTTCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTATTGATCGATGGGACAT</pcr_primer_p1>
		<pcr_primer_p2>AACATTATTTTCGATTGTTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTATTGATCGATGGGACATTCAGAAGTAGCGAAAAATTTGCTGAACCGCCGATAAAATGAGCAATACAGTAGCCCGCGTTACAGTAACCAACAAAAAAATAAAACTAATCCCTGATAGAACTCACAATAGAATTCAGAGTGCAGAAAGTTTAAAATTTCTATGTTTTCTTATATTTTCGAGGCGCATAAAATTTCCTAATTTTGCTAACACCGTTTTCTGAACTTTGAAAACAATCGAAAATAATGTT</canonical_amplicon>
		<polymorphic_amplicon>AATTATTGATCGATGGGACATTCAGAAGTAGCGAAAAATTTGCTGAACCGCCGATAAAATGAGCAATACAGTAGCCCGCGTTACAGTAACCAACAAAAAAATAAAACTAATCCCTGATAGAACTCACAATAGAATTCRGAGTGCAGAAAGTTTAAAATTTCTATGTTTTCTTATATTTTCGAGGCGCATAAAATTTCCTAATTTTGCTAACACCGTTTTCTGAACTTTGAAAACAATCGAAAATAATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37931</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1056717</contig_pos>
        <strand>+</strand>
        <context>TTGCTAGCCG[A/T]AAAAAARTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAACATCCTTCTGAAAAGGAAACGATTAAACGAAAGGATTTTGCTAGCCG</left_flank>
        <right_flank>AAAAAAGTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGGGTGTGGAAGGCGATGTGCGACTTTCCGTTCTCGTCAATGTATCCTCCGAAGCGGATAGCTTCCCAGAAATCGTGACAGCCTGTAATTATTTGCATTTATGAAGACGAAGCTTTCTCTTTTTGCAAACTAGTAATTGGCATCGTCTTCTCTGAAGCCACTTTCCTCAAAAAAACTCACCAATAGCATGGCAAGGCTCCGCATTCTTCATGTAGATCTGAGCGGCCTGCAGCACATCAATATCAATTGACCCATTTCTAGTGCTCATATCCTCCACGAGAATCCAATCGGTGGACAGCATTGCAAAGACAGCCTGAAAAAATCTTATATTTGATTTTCTCAAAGATTTTAGCTTACCAAGATTGCTGCAACAGTGTGGAACACGGTTGCCGGAATGTTGGCCTCGCGAAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGAAACGATTAAACGAAAGGATTTTGCTAGCCGAAAAAAAGTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATTGACAAAAATCTGCCGCCGGCTCCGGGGGTCCGCGCGAGCCGGAGGGAAATTGAGAAAAGAGAATCAATAGCGAAAGGCCTCCCGATGAGAGGAAGCGCAGCTTTCCGAAACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACGATGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTTTTTTCCTCTTTTCTCTTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAAGAGAAGAGTAGTGAAAGTTGAAAAACACGGAACAACACGGAACAACACACTGGAAACTTTTTACTGACTGCCCTTTTCTGAGAAAATGTTTTGACGAGAGAGTGAAAACGAAAATCCGAGTAGGCATAAGTGGGAGGGTCTCAAAAAGAAGACATTAAATTGATACACCCGTTTAGAAAGTGAAGATACTGGGATACCAATTG</canonical>
            <polymorphic>ATGGGGTGTGGAAGGCGATGTGCGACTTTCCGTTCTCGTCAATGTATCCTCCGAAGCGGATAGCTTCCCAGAAATCGTGACAGCCTGTAATTATTTGCATTTATGAAGACGAAGCTTTCTCTTTTTGCAAACTAGTAATTGGCATCGTCTTCTCTGAAGCCACTTTCCTCAAAAAAACTCACCAATAGCATGGCAAGGCTCCGCATTCTTCATGTAGATCTGAGCGGCCTGCAGCACATCAATATCAATTGACCCATTTCTAGTGCTCATATCCTCCACGAGAATCCAATCGGTGGACAGCATTGCAAAGACAGCCTGAAAAAATCTTATATTTGATTTTCTCAAAGATTTTAGCTTACCAAGATTGCTGCAACAGTGTGGAACACGGTTGCCGGAATGTTGGCCTCGCGAAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGAAACGATTAAACGAAAGGATTTTGCTAGCCGWAAAAAAGTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATTGACAAAAATCTGCCGCCGGCTCCGGGGGTCCGCGCGAGCCGGAGGGAAATTGAGAAAAGAGAATCAATAGCGAAAGGCCTCCCGATGAGAGGAAGCGCAGCTTTCCGAAACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACGATGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTTTTTTCCTCTTTTCTCTTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAAGAGAAGAGTAGTGAAAGTTGAAAAACACGGAACAACACGGAACAACACACTGGAAACTTTTTACTGACTGCCCTTTTCTGAGAAAATGTTTTGACGAGAGAGTGAAAACGAAAATCCGAGTAGGCATAAGTGGGAGGGTCTCAAAAAGAAGACATTAAATTGATACACCCGTTTAGAAAGTGAAGATACTGGGATACCAATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGATCCATCCGTGTACAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTTCGCTATTGATTCTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>216</pcr_amplicon_size>
		<canonical_amplicon>AAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGAAACGATTAAACGAAAGGATTTTGCTAGCCGAAAAAAAGTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATTGACAAAAATCTGCCGCCGGCTCCGGGGGTCCGCGCGAGCCGGAGGGAAATTGAGAAAAGAGAATCAATAGCGAAAG</canonical_amplicon>
		<polymorphic_amplicon>AAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGAAACGATTAAACGAAAGGATTTTGCTAGCCGWAAAAAAGTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATTGACAAAAATCTGCCGCCGGCTCCGGGGGTCCGCGCGAGCCGGAGGGAAATTGAGAAAAGAGAATCAATAGCGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37932</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1056724</contig_pos>
        <strand>+</strand>
        <context>CCGWAAAAAA[A/G]TGGAGAGGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTCTGAAAAGGAAACGATTAAACGAAAGGATTTTGCTAGCCGAAAAAAA</left_flank>
        <right_flank>TGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATTGACAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGGAAGGCGATGTGCGACTTTCCGTTCTCGTCAATGTATCCTCCGAAGCGGATAGCTTCCCAGAAATCGTGACAGCCTGTAATTATTTGCATTTATGAAGACGAAGCTTTCTCTTTTTGCAAACTAGTAATTGGCATCGTCTTCTCTGAAGCCACTTTCCTCAAAAAAACTCACCAATAGCATGGCAAGGCTCCGCATTCTTCATGTAGATCTGAGCGGCCTGCAGCACATCAATATCAATTGACCCATTTCTAGTGCTCATATCCTCCACGAGAATCCAATCGGTGGACAGCATTGCAAAGACAGCCTGAAAAAATCTTATATTTGATTTTCTCAAAGATTTTAGCTTACCAAGATTGCTGCAACAGTGTGGAACACGGTTGCCGGAATGTTGGCCTCGCGAAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGAAACGATTAAACGAAAGGATTTTGCTAGCCGAAAAAAAGTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATTGACAAAAATCTGCCGCCGGCTCCGGGGGTCCGCGCGAGCCGGAGGGAAATTGAGAAAAGAGAATCAATAGCGAAAGGCCTCCCGATGAGAGGAAGCGCAGCTTTCCGAAACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACGATGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTTTTTTCCTCTTTTCTCTTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAAGAGAAGAGTAGTGAAAGTTGAAAAACACGGAACAACACGGAACAACACACTGGAAACTTTTTACTGACTGCCCTTTTCTGAGAAAATGTTTTGACGAGAGAGTGAAAACGAAAATCCGAGTAGGCATAAGTGGGAGGGTCTCAAAAAGAAGACATTAAATTGATACACCCGTTTAGAAAGTGAAGATACTGGGATACCAATTGATCGAGA</canonical>
            <polymorphic>GTGGAAGGCGATGTGCGACTTTCCGTTCTCGTCAATGTATCCTCCGAAGCGGATAGCTTCCCAGAAATCGTGACAGCCTGTAATTATTTGCATTTATGAAGACGAAGCTTTCTCTTTTTGCAAACTAGTAATTGGCATCGTCTTCTCTGAAGCCACTTTCCTCAAAAAAACTCACCAATAGCATGGCAAGGCTCCGCATTCTTCATGTAGATCTGAGCGGCCTGCAGCACATCAATATCAATTGACCCATTTCTAGTGCTCATATCCTCCACGAGAATCCAATCGGTGGACAGCATTGCAAAGACAGCCTGAAAAAATCTTATATTTGATTTTCTCAAAGATTTTAGCTTACCAAGATTGCTGCAACAGTGTGGAACACGGTTGCCGGAATGTTGGCCTCGCGAAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGAAACGATTAAACGAAAGGATTTTGCTAGCCGAAAAAAARTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATTGACAAAAATCTGCCGCCGGCTCCGGGGGTCCGCGCGAGCCGGAGGGAAATTGAGAAAAGAGAATCAATAGCGAAAGGCCTCCCGATGAGAGGAAGCGCAGCTTTCCGAAACACACTCTTCCCGTCAAATCGCGGCGAGACCCTCGCGCAGGCACTACGATGGATGTCTGCGTCTCCTACGTTTTCACTATCTCTTTTTTTTCCTCTTTTCTCTTTCGGGGGCTTGGCTTGTTTTCAATTGAAAAAAAGAGAAGAGTAGTGAAAGTTGAAAAACACGGAACAACACGGAACAACACACTGGAAACTTTTTACTGACTGCCCTTTTCTGAGAAAATGTTTTGACGAGAGAGTGAAAACGAAAATCCGAGTAGGCATAAGTGGGAGGGTCTCAAAAAGAAGACATTAAATTGATACACCCGTTTAGAAAGTGAAGATACTGGGATACCAATTGATCGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>153 83 83 74 74 57 55 55 39 39 35 33 29 28 28 19 17 15 14 13 12 11 10 10 5 3 2 2 2</canonical_bands>
                <polymorphic_bands>227 83 83 74 57 55 55 39 39 35 33 29 28 28 19 17 15 14 13 12 11 10 10 5 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGATCCATCCGTGTACAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTTCGCTATTGATTCTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>216</pcr_amplicon_size>
		<canonical_amplicon>AAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGAAACGATTAAACGAAAGGATTTTGCTAGCCGAAAAAAAGTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATTGACAAAAATCTGCCGCCGGCTCCGGGGGTCCGCGCGAGCCGGAGGGAAATTGAGAAAAGAGAATCAATAGCGAAAG</canonical_amplicon>
		<polymorphic_amplicon>AAGATCCATCCGTGTACAAACGGTGCCAAGTTTGGAGAGGAACATCCTTCTGAAAAGGAAACGATTAAACGAAAGGATTTTGCTAGCCGAAAAAAARTGGAGAGGAATCTGAACTTCTGGAAATCCAACGAAAAGAAATTGACAAAAATCTGCCGCCGGCTCCGGGGGTCCGCGCGAGCCGGAGGGAAATTGAGAAAAGAGAATCAATAGCGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37933</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1062869</contig_pos>
        <strand>+</strand>
        <context>CACTTACTAG[A/T]TCAAAATTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACTCCTCGTTGCTCACGCCGCCGTCTCTTCGATTCGCTCCACTTACTAG</left_flank>
        <right_flank>TCAAAATTCCCTATTTTTAAAGAAAACCTTGCGAACTTTTTCACGCTATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTACTCTTTGATTCGAAGAGATTTAATTGCCTAAAAAAACGACAGAAAGCGCTAAACGCCCATTTTCCACTTTGTACGCAAACACCGCGACGCAAAAATGCACAGCACGTTTTCCGGCAATTTGAAGTTATTTTTTTTCCTCTGAAACACAAAGTTAAGACAGTTTTCTGAATATGAACAGTGTGAAATTGTGAATTTTTTTGTTCAAAAACTTGAAAAAGTCAAAGCGGGGTGGGTTATAAAAAACAAATATTGATTTTCGAAATATCTTGTTTTAATTAATAATCTAAGTGTTTTCAGATCCTTTCCCGCGCTAAGCAGTACGTTCACAATGGAGATCTTGACAAGGCGATTCGTGTTGTGCAACTTTTGAAGGGACAACCCGCCCATTTGGCGCACGACTGGGTACTCGACACTCGTGCTTATCTCGAGTCGCGTCTTCTTGCTCAACTCCTCGTTGCTCACGCCGCCGTCTCTTCGATTCGCTCCACTTACTAGATCAAAATTCCCTATTTTTAAAGAAAACCTTGCGAACTTTTTCACGCTATCTACTGGTTTTATCCCCTACACTCATTTTGTAACAAAACTTACTACTCACGATTGAAAAAATCCTTAAACAGCTTTTGTTGGCTAGTATTTGTGCGTCTTTTAGAAAACCCGAATTCTGTGTTGGTAGTTTGTAGCACACGTTTCCCCCGTTTTCCGTTTATTTTGCCTTTTTTCTCCCAAAAATTTAAAAATGTGTAGTTTTTTTTTTCTCTGCGAACTTTGTTTGAGTAAATTTGAAGTTTTTTTGAGTAACTATATTTTCAAATGACATTCAGGAGACGGAAAATTTCTGAAATGGAGAGAAAGGGTCATCGAAAAGGGAGTGGCGCGCTGAAATGAATGGCATCGTTCTTGGCAAAATCGAGATAATTGAAAATTGACGTAAGGAGAGAGGAAGAGAATGAGCTATAAAAAATGCAAAAAATTTTTTGGGGGAGGCTACGGCGAGAC</canonical>
            <polymorphic>TCTACTCTTTGATTCGAAGAGATTTAATTGCCTAAAAAAACGACAGAAAGCGCTAAACGCCCATTTTCCACTTTGTACGCAAACACCGCGACGCAAAAATGCACAGCACGTTTTCCGGCAATTTGAAGTTATTTTTTTTCCTCTGAAACACAAAGTTAAGACAGTTTTCTGAATATGAACAGTGTGAAATTGTGAATTTTTTTGTTCAAAAACTTGAAAAAGTCAAAGCGGGGTGGGTTATAAAAAACAAATATTGATTTTCGAAATATCTTGTTTTAATTAATAATCTAAGTGTTTTCAGATCCTTTCCCGCGCTAAGCAGTACGTTCACAATGGAGATCTTGACAAGGCGATTCGTGTTGTGCAACTTTTGAAGGGACAACCCGCCCATTTGGCGCACGACTGGGTACTCGACACTCGTGCTTATCTCGAGTCGCGTCTTCTTGCTCAACTCCTCGTTGCTCACGCCGCCGTCTCTTCGATTCGCTCCACTTACTAGWTCAAAATTCCCTATTTTTAAAGAAAACCTTGCGAACTTTTTCACGCTATCTACTGGTTTTATCCCCTACACTCATTTTGTAACAAAACTTACTACTCACGATTGAAAAAATCCTTAAACAGCTTTTGTTGGCTAGTATTTGTGCGTCTTTTAGAAAACCCGAATTCTGTGTTGGTAGTTTGTAGCACACGTTTCCCCCGTTTTCCGTTTATTTTGCCTTTTTTCTCCCAAAAATTTAAAAATGTGTAGTTTTTTTTTTCTCTGCGAACTTTGTTTGAGTAAATTTGAAGTTTTTTTGAGTAACTATATTTTCAAATGACATTCAGGAGACGGAAAATTTCTGAAATGGAGAGAAAGGGTCATCGAAAAGGGAGTGGCGCGCTGAAATGAATGGCATCGTTCTTGGCAAAATCGAGATAATTGAAAATTGACGTAAGGAGAGAGGAAGAGAATGAGCTATAAAAAATGCAAAAAATTTTTTGGGGGAGGCTACGGCGAGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>502 300 161 37</canonical_bands>
                <polymorphic_bands>663 300 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACTCGACACTCGTGCTTATC</pcr_primer_p1>
		<pcr_primer_p2>TTTCTAAAAGACGCACAAATACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TACTCGACACTCGTGCTTATCTCGAGTCGCGTCTTCTTGCTCAACTCCTCGTTGCTCACGCCGCCGTCTCTTCGATTCGCTCCACTTACTAGATCAAAATTCCCTATTTTTAAAGAAAACCTTGCGAACTTTTTCACGCTATCTACTGGTTTTATCCCCTACACTCATTTTGTAACAAAACTTACTACTCACGATTGAAAAAATCCTTAAACAGCTTTTGTTGGCTAGTATTTGTGCGTCTTTTAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TACTCGACACTCGTGCTTATCTCGAGTCGCGTCTTCTTGCTCAACTCCTCGTTGCTCACGCCGCCGTCTCTTCGATTCGCTCCACTTACTAGWTCAAAATTCCCTATTTTTAAAGAAAACCTTGCGAACTTTTTCACGCTATCTACTGGTTTTATCCCCTACACTCATTTTGTAACAAAACTTACTACTCACGATTGAAAAAATCCTTAAACAGCTTTTGTTGGCTAGTATTTGTGCGTCTTTTAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37934</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1066380</contig_pos>
        <strand></strand>
        <context>TGGTCAAATT[A/T]SGAAAAGAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGAGTTATGACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATT</left_flank>
        <right_flank>GGAAAAGAGATTCATAGCAAAATGTAAAAATGGCATACCGTATACATCAT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATGAGAGAAATGAGAGGGAGTGGAGACACAGTTGGACAATATATACTTTTGCTAATTGATGGCAAGTGATAGCATCTGAGGAGGAAGAAATAATTTTTTTGAAGAAGATGACAGTTTTCTCCTTATTGTTTTTTTGTTTTGTTTGGAAGAAGAGAACATCACGAGGTGCGTTTTGTTTCGAAACGGGCGCAGCCAAAGAGGAGAGAGGGGACAATATGTTGGGGAGGGAACCGACAGCAAAAAGCCGTGGATGTGGTGTTGGCATGCTGACGTCGCACTTTGAATTATTGGATTGCATAAATCGACTAGTTAGGGTGCAAAAAAGGAATAAGAGGGTGATACGATCTGTTTGAGTTTGCTCATATTGAAGCATGGGCAACAGATGGCGGTGCCTGGAACCAACACATCGATTTTCTAGGAAGACAAATGCAGCATGTGACGATCTGTTTTGAGTTATGACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATTAGGAAAAGAGATTCATAGCAAAATGTAAAAATGGCATACCGTATACATCATACTAAAGCAGAAAAATGGCATGCTGTATTTTTAGCCGGCACTTCCTAAGCAATACAATTGCTCCTATCCAAGTTTCTCAGCATCAAACACTCAGAATTTTTCTTTTTTCAATGGTGTCAACTTTAGAGAAACGCTAGAAGATGAACAAAAATTCAAATGGACAATTTGTTTTTTACTTCTCAGAGCAAGACAAGGATGAAAACGACAGATACATACATATACCCAGAAAGGATCATAAAAAATATAATTTGAATCATTAGATTGCATGAATTGAATTGATGGGATAGAAAAAATAGAGATGAGGTGATAAGATTTTTTTAAAAATTGCTTGGATGGAAACATGGACAACATCTGGTGGTGCCTGGAACCAACATATTGATTTTTCGGAATAAGAAATGACGATCTGTTAAAAGTTATGACTCATATTGTAGAGGGATGATGAGATGATAT</canonical>
            <polymorphic>AGATGAGAGAAATGAGAGGGAGTGGAGACACAGTTGGACAATATATACTTTTGCTAATTGATGGCAAGTGATAGCATCTGAGGAGGAAGAAATAATTTTTTTGAAGAAGATGACAGTTTTCTCCTTATTGTTTTTTTGTTTTGTTTGGAAGAAGAGAACATCACGAGGTGCGTTTTGTTTCGAAACGGGCGCAGCCAAAGAGGAGAGAGGGGACAATATGTTGGGGAGGGAACCGACAGCAAAAAGCCGTGGATGTGGTGTTGGCATGCTGACGTCGCACTTTGAATTATTGGATTGCATAAATCGACTAGTTAGGGTGCAAAAAAGGAATAAGAGGGTGATACGATCTGTTTGAGTTTGCTCATATTGAAGCATGGGCAACAGATGGCGGTGCCTGGAACCAACACATCGATTTTCTAGGAAGACAAATGCAGCATGTGACGATCTGTTTTGAGTTATGACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATTWGGAAAAGAGATTCATAGCAAAATGTAAAAATGGCATACCGTATACATCATACTAAAGCAGAAAAATGGCATGCTGTATTTTTAGCCGGCACTTCCTAAGCAATACAATTGCTCCTATCCAAGTTTCTCAGCATCAAACACTCAGAATTTTTCTTTTTTCAATGGTGTCAACTTTAGAGAAACGCTAGAAGATGAACAAAAATTCAAATGGACAATTTGTTTTTTACTTCTCAGAGCAAGACAAGGATGAAAACGACAGATACATACATATACCCAGAAAGGATCATAAAAAATATAATTTGAATCATTAGATTGCATGAATTGAATTGATGGGATAGAAAAAATAGAGATGAGGTGATAAGATTTTTTTAAAAATTGCTTGGATGGAAACATGGACAACATCTGGTGGTGCCTGGAACCAACATATTGATTTTTCGGAATAAGAAATGACGATCTGTTAAAAGTTATGACTCATATTGTAGAGGGATGATGAGATGATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATCGATTTTCTAGGAAGACA</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAAAATTCTGAGTGTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATCGATTTTCTAGGAAGACAAATGCAGCATGTGACGATCTGTTTTGAGTTATGACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATTAGGAAAAGAGATTCATAGCAAAATGTAAAAATGGCATACCGTATACATCATACTAAAGCAGAAAAATGGCATGCTGTATTTTTAGCCGGCACTTCCTAAGCAATACAATTGCTCCTATCCAAGTTTCTCAGCATCAAACACTCAGAATTTTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>ACATCGATTTTCTAGGAAGACAAATGCAGCATGTGACGATCTGTTTTGAGTTATGACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATTWGGAAAAGAGATTCATAGCAAAATGTAAAAATGGCATACCGTATACATCATACTAAAGCAGAAAAATGGCATGCTGTATTTTTAGCCGGCACTTCCTAAGCAATACAATTGCTCCTATCCAAGTTTCTCAGCATCAAACACTCAGAATTTTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37935</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1066381</contig_pos>
        <strand></strand>
        <context>GGTCAAATTW[G/C]GAAAAGAGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TTGAGTTATGACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATTA</left_flank>
        <right_flank>GAAAAGAGATTCATAGCAAAATGTAAAAATGGCATACCGTATACATCATA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGAGAGAAATGAGAGGGAGTGGAGACACAGTTGGACAATATATACTTTTGCTAATTGATGGCAAGTGATAGCATCTGAGGAGGAAGAAATAATTTTTTTGAAGAAGATGACAGTTTTCTCCTTATTGTTTTTTTGTTTTGTTTGGAAGAAGAGAACATCACGAGGTGCGTTTTGTTTCGAAACGGGCGCAGCCAAAGAGGAGAGAGGGGACAATATGTTGGGGAGGGAACCGACAGCAAAAAGCCGTGGATGTGGTGTTGGCATGCTGACGTCGCACTTTGAATTATTGGATTGCATAAATCGACTAGTTAGGGTGCAAAAAAGGAATAAGAGGGTGATACGATCTGTTTGAGTTTGCTCATATTGAAGCATGGGCAACAGATGGCGGTGCCTGGAACCAACACATCGATTTTCTAGGAAGACAAATGCAGCATGTGACGATCTGTTTTGAGTTATGACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATTAGGAAAAGAGATTCATAGCAAAATGTAAAAATGGCATACCGTATACATCATACTAAAGCAGAAAAATGGCATGCTGTATTTTTAGCCGGCACTTCCTAAGCAATACAATTGCTCCTATCCAAGTTTCTCAGCATCAAACACTCAGAATTTTTCTTTTTTCAATGGTGTCAACTTTAGAGAAACGCTAGAAGATGAACAAAAATTCAAATGGACAATTTGTTTTTTACTTCTCAGAGCAAGACAAGGATGAAAACGACAGATACATACATATACCCAGAAAGGATCATAAAAAATATAATTTGAATCATTAGATTGCATGAATTGAATTGATGGGATAGAAAAAATAGAGATGAGGTGATAAGATTTTTTTAAAAATTGCTTGGATGGAAACATGGACAACATCTGGTGGTGCCTGGAACCAACATATTGATTTTTCGGAATAAGAAATGACGATCTGTTAAAAGTTATGACTCATATTGTAGAGGGATGATGAGATGATATT</canonical>
            <polymorphic>GATGAGAGAAATGAGAGGGAGTGGAGACACAGTTGGACAATATATACTTTTGCTAATTGATGGCAAGTGATAGCATCTGAGGAGGAAGAAATAATTTTTTTGAAGAAGATGACAGTTTTCTCCTTATTGTTTTTTTGTTTTGTTTGGAAGAAGAGAACATCACGAGGTGCGTTTTGTTTCGAAACGGGCGCAGCCAAAGAGGAGAGAGGGGACAATATGTTGGGGAGGGAACCGACAGCAAAAAGCCGTGGATGTGGTGTTGGCATGCTGACGTCGCACTTTGAATTATTGGATTGCATAAATCGACTAGTTAGGGTGCAAAAAAGGAATAAGAGGGTGATACGATCTGTTTGAGTTTGCTCATATTGAAGCATGGGCAACAGATGGCGGTGCCTGGAACCAACACATCGATTTTCTAGGAAGACAAATGCAGCATGTGACGATCTGTTTTGAGTTATGACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATTASGAAAAGAGATTCATAGCAAAATGTAAAAATGGCATACCGTATACATCATACTAAAGCAGAAAAATGGCATGCTGTATTTTTAGCCGGCACTTCCTAAGCAATACAATTGCTCCTATCCAAGTTTCTCAGCATCAAACACTCAGAATTTTTCTTTTTTCAATGGTGTCAACTTTAGAGAAACGCTAGAAGATGAACAAAAATTCAAATGGACAATTTGTTTTTTACTTCTCAGAGCAAGACAAGGATGAAAACGACAGATACATACATATACCCAGAAAGGATCATAAAAAATATAATTTGAATCATTAGATTGCATGAATTGAATTGATGGGATAGAAAAAATAGAGATGAGGTGATAAGATTTTTTTAAAAATTGCTTGGATGGAAACATGGACAACATCTGGTGGTGCCTGGAACCAACATATTGATTTTTCGGAATAAGAAATGACGATCTGTTAAAAGTTATGACTCATATTGTAGAGGGATGATGAGATGATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATCGATTTTCTAGGAAGACA</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAAAATTCTGAGTGTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATCGATTTTCTAGGAAGACAAATGCAGCATGTGACGATCTGTTTTGAGTTATGACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATTAGGAAAAGAGATTCATAGCAAAATGTAAAAATGGCATACCGTATACATCATACTAAAGCAGAAAAATGGCATGCTGTATTTTTAGCCGGCACTTCCTAAGCAATACAATTGCTCCTATCCAAGTTTCTCAGCATCAAACACTCAGAATTTTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>ACATCGATTTTCTAGGAAGACAAATGCAGCATGTGACGATCTGTTTTGAGTTATGACTCACATAGTTGAGGAGTGACGAATTTTTGGTCAAATTASGAAAAGAGATTCATAGCAAAATGTAAAAATGGCATACCGTATACATCATACTAAAGCAGAAAAATGGCATGCTGTATTTTTAGCCGGCACTTCCTAAGCAATACAATTGCTCCTATCCAAGTTTCTCAGCATCAAACACTCAGAATTTTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37936</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1100640</contig_pos>
        <strand></strand>
        <context>ACTTTTGAAT[T/C]TTCGAATTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTATAAAATCCATTCTGTTCCAATCGAAACTTTTTTTTAAACTTTTGAAT</left_flank>
        <right_flank>TTCGAATTTCCCTGAATTATTCTGAAAAATTAGTTTGTGTTTCTTTTATT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAACTAACATAAGTAGATTCGTCTTTTCCGGGGAAAAAGTGCATATTGTCGGTTTTTAGTTTCTTTTAGATAGTTTTTCTGGATTTTTGTGCCATATTTGAAAAATCACTTCCCTTAAATTTTTGAAAATGTTCAAAAATTCCAGCAATTATTCCAAATTTTTTGTTTTGCAAAATTCTGTTCATTTTTTGACCCCGCAAATTGGATAATTCTGAAAAAAGCCTATTTGTCATCTGATCTCCGTTCTGTACACTATTTTTTTTCTCTTTTTTTCTTGAAAAATGGAACCTAACTGTTTGCATTTACTGAGAATTCAGATGATAAATGTGCGAAGACGATGTGCAACGTTGAGAAACTGAGTTCCTCTTCTAGAATTTCCAATTTCGGCTCTCCAAAAAAATGGATATAGGTTTTCATAGGAACTCAAGGAGAAACATAGTTTCCTGTTTTATAAAATCCATTCTGTTCCAATCGAAACTTTTTTTTAAACTTTTGAATTTTCGAATTTCCCTGAATTATTCTGAAAAATTAGTTTGTGTTTCTTTTATTCTAAGTTTGTTTTTTATTGGATCTGAATAAACTACAAATTCTTTTTGAGCTAAAAATTTGCAGTTCGAAATTTTTGTGGTTTTCAAATTTCTGGAAAAATTTGCTTATTACAGTTTCTGAATTTTGGCAGGCCTGGAAATTCGTTTTTTTCTTTTATTAAATTGACTTCGCATAGAATCTCAAACCTATCATTCAGGAACTTAATACTTTTTGAATTCCGACTTCTTATTTTCAAGTACAGTATGATTTCCCACTTTTCTGATTCCATTTTAACAAAAAAGTTCAAAAACTTGCACTGATCTTGTGGCCCCGTCGGACGGGGGTCCCGTCCTCAGGGGAAGTAAAGTTCCGCGAGCCCCAGACAACGTCATGTCGACGTTATGCTTCCTTTTCCTTCGACTGAGTAGTATCATCCAGTAATACACAAAAGAGACAGAGTTTCTATTGGAA</canonical>
            <polymorphic>TCAACTAACATAAGTAGATTCGTCTTTTCCGGGGAAAAAGTGCATATTGTCGGTTTTTAGTTTCTTTTAGATAGTTTTTCTGGATTTTTGTGCCATATTTGAAAAATCACTTCCCTTAAATTTTTGAAAATGTTCAAAAATTCCAGCAATTATTCCAAATTTTTTGTTTTGCAAAATTCTGTTCATTTTTTGACCCCGCAAATTGGATAATTCTGAAAAAAGCCTATTTGTCATCTGATCTCCGTTCTGTACACTATTTTTTTTCTCTTTTTTTCTTGAAAAATGGAACCTAACTGTTTGCATTTACTGAGAATTCAGATGATAAATGTGCGAAGACGATGTGCAACGTTGAGAAACTGAGTTCCTCTTCTAGAATTTCCAATTTCGGCTCTCCAAAAAAATGGATATAGGTTTTCATAGGAACTCAAGGAGAAACATAGTTTCCTGTTTTATAAAATCCATTCTGTTCCAATCGAAACTTTTTTTTAAACTTTTGAATYTTCGAATTTCCCTGAATTATTCTGAAAAATTAGTTTGTGTTTCTTTTATTCTAAGTTTGTTTTTTATTGGATCTGAATAAACTACAAATTCTTTTTGAGCTAAAAATTTGCAGTTCGAAATTTTTGTGGTTTTCAAATTTCTGGAAAAATTTGCTTATTACAGTTTCTGAATTTTGGCAGGCCTGGAAATTCGTTTTTTTCTTTTATTAAATTGACTTCGCATAGAATCTCAAACCTATCATTCAGGAACTTAATACTTTTTGAATTCCGACTTCTTATTTTCAAGTACAGTATGATTTCCCACTTTTCTGATTCCATTTTAACAAAAAAGTTCAAAAACTTGCACTGATCTTGTGGCCCCGTCGGACGGGGGTCCCGTCCTCAGGGGAAGTAAAGTTCCGCGAGCCCCAGACAACGTCATGTCGACGTTATGCTTCCTTTTCCTTCGACTGAGTAGTATCATCCAGTAATACACAAAAGAGACAGAGTTTCTATTGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>237 137 123 118 82 76 62 22 20 19 18 18 17 17 14 12 8</canonical_bands>
                <polymorphic_bands>237 137 131 118 82 76 62 22 20 19 18 18 17 17 14 12</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>237 118 116 103 62 59 54 26 22 22 20 18 18 17 17 14 13 12 10 10 9 8 8 7</canonical_bands>
                <polymorphic_bands>237 124 118 103 62 59 54 26 22 22 20 18 18 17 17 14 13 12 10 10 9 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAGAAACATAGTTTCCTGTTTTA</pcr_primer_p1>
		<pcr_primer_p2>GCCAAAATTCAGAAACTGTAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAGAAACATAGTTTCCTGTTTTATAAAATCCATTCTGTTCCAATCGAAACTTTTTTTTAAACTTTTGAATTTTCGAATTTCCCTGAATTATTCTGAAAAATTAGTTTGTGTTTCTTTTATTCTAAGTTTGTTTTTTATTGGATCTGAATAAACTACAAATTCTTTTTGAGCTAAAAATTTGCAGTTCGAAATTTTTGTGGTTTTCAAATTTCTGGAAAAATTTGCTTATTACAGTTTCTGAATTTTGGC</canonical_amplicon>
		<polymorphic_amplicon>GGAGAAACATAGTTTCCTGTTTTATAAAATCCATTCTGTTCCAATCGAAACTTTTTTTTAAACTTTTGAATYTTCGAATTTCCCTGAATTATTCTGAAAAATTAGTTTGTGTTTCTTTTATTCTAAGTTTGTTTTTTATTGGATCTGAATAAACTACAAATTCTTTTTGAGCTAAAAATTTGCAGTTCGAAATTTTTGTGGTTTTCAAATTTCTGGAAAAATTTGCTTATTACAGTTTCTGAATTTTGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37937</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1100670</contig_pos>
        <strand></strand>
        <context>TTCTGAAAAA[T/G]TAGTTTGTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTTTTTTTAAACTTTTGAATTTTCGAATTTCCCTGAATTATTCTGAAAAA</left_flank>
        <right_flank>TAGTTTGTGTTTCTTTTATTCTAAGTTTGTTTTTTATTGGATCTGAATAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGGAAAAAGTGCATATTGTCGGTTTTTAGTTTCTTTTAGATAGTTTTTCTGGATTTTTGTGCCATATTTGAAAAATCACTTCCCTTAAATTTTTGAAAATGTTCAAAAATTCCAGCAATTATTCCAAATTTTTTGTTTTGCAAAATTCTGTTCATTTTTTGACCCCGCAAATTGGATAATTCTGAAAAAAGCCTATTTGTCATCTGATCTCCGTTCTGTACACTATTTTTTTTCTCTTTTTTTCTTGAAAAATGGAACCTAACTGTTTGCATTTACTGAGAATTCAGATGATAAATGTGCGAAGACGATGTGCAACGTTGAGAAACTGAGTTCCTCTTCTAGAATTTCCAATTTCGGCTCTCCAAAAAAATGGATATAGGTTTTCATAGGAACTCAAGGAGAAACATAGTTTCCTGTTTTATAAAATCCATTCTGTTCCAATCGAAACTTTTTTTTAAACTTTTGAATTTTCGAATTTCCCTGAATTATTCTGAAAAATTAGTTTGTGTTTCTTTTATTCTAAGTTTGTTTTTTATTGGATCTGAATAAACTACAAATTCTTTTTGAGCTAAAAATTTGCAGTTCGAAATTTTTGTGGTTTTCAAATTTCTGGAAAAATTTGCTTATTACAGTTTCTGAATTTTGGCAGGCCTGGAAATTCGTTTTTTTCTTTTATTAAATTGACTTCGCATAGAATCTCAAACCTATCATTCAGGAACTTAATACTTTTTGAATTCCGACTTCTTATTTTCAAGTACAGTATGATTTCCCACTTTTCTGATTCCATTTTAACAAAAAAGTTCAAAAACTTGCACTGATCTTGTGGCCCCGTCGGACGGGGGTCCCGTCCTCAGGGGAAGTAAAGTTCCGCGAGCCCCAGACAACGTCATGTCGACGTTATGCTTCCTTTTCCTTCGACTGAGTAGTATCATCCAGTAATACACAAAAGAGACAGAGTTTCTATTGGAATCAATTGTCGCTTCGCTGCACTTATTCTTT</canonical>
            <polymorphic>GGGGAAAAAGTGCATATTGTCGGTTTTTAGTTTCTTTTAGATAGTTTTTCTGGATTTTTGTGCCATATTTGAAAAATCACTTCCCTTAAATTTTTGAAAATGTTCAAAAATTCCAGCAATTATTCCAAATTTTTTGTTTTGCAAAATTCTGTTCATTTTTTGACCCCGCAAATTGGATAATTCTGAAAAAAGCCTATTTGTCATCTGATCTCCGTTCTGTACACTATTTTTTTTCTCTTTTTTTCTTGAAAAATGGAACCTAACTGTTTGCATTTACTGAGAATTCAGATGATAAATGTGCGAAGACGATGTGCAACGTTGAGAAACTGAGTTCCTCTTCTAGAATTTCCAATTTCGGCTCTCCAAAAAAATGGATATAGGTTTTCATAGGAACTCAAGGAGAAACATAGTTTCCTGTTTTATAAAATCCATTCTGTTCCAATCGAAACTTTTTTTTAAACTTTTGAATTTTCGAATTTCCCTGAATTATTCTGAAAAAKTAGTTTGTGTTTCTTTTATTCTAAGTTTGTTTTTTATTGGATCTGAATAAACTACAAATTCTTTTTGAGCTAAAAATTTGCAGTTCGAAATTTTTGTGGTTTTCAAATTTCTGGAAAAATTTGCTTATTACAGTTTCTGAATTTTGGCAGGCCTGGAAATTCGTTTTTTTCTTTTATTAAATTGACTTCGCATAGAATCTCAAACCTATCATTCAGGAACTTAATACTTTTTGAATTCCGACTTCTTATTTTCAAGTACAGTATGATTTCCCACTTTTCTGATTCCATTTTAACAAAAAAGTTCAAAAACTTGCACTGATCTTGTGGCCCCGTCGGACGGGGGTCCCGTCCTCAGGGGAAGTAAAGTTCCGCGAGCCCCAGACAACGTCATGTCGACGTTATGCTTCCTTTTCCTTCGACTGAGTAGTATCATCCAGTAATACACAAAAGAGACAGAGTTTCTATTGGAATCAATTGTCGCTTCGCTGCACTTATTCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>239 116 103 88 62 59 54 28 26 22 22 20 18 18 17 17 14 13 12 10 10 9 8 8 7</canonical_bands>
                <polymorphic_bands>239 116 103 88 72 62 54 28 26 22 22 20 18 18 17 17 14 12 10 10 9 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAGAAACATAGTTTCCTGTTTTA</pcr_primer_p1>
		<pcr_primer_p2>GCCAAAATTCAGAAACTGTAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAGAAACATAGTTTCCTGTTTTATAAAATCCATTCTGTTCCAATCGAAACTTTTTTTTAAACTTTTGAATTTTCGAATTTCCCTGAATTATTCTGAAAAATTAGTTTGTGTTTCTTTTATTCTAAGTTTGTTTTTTATTGGATCTGAATAAACTACAAATTCTTTTTGAGCTAAAAATTTGCAGTTCGAAATTTTTGTGGTTTTCAAATTTCTGGAAAAATTTGCTTATTACAGTTTCTGAATTTTGGC</canonical_amplicon>
		<polymorphic_amplicon>GGAGAAACATAGTTTCCTGTTTTATAAAATCCATTCTGTTCCAATCGAAACTTTTTTTTAAACTTTTGAATTTTCGAATTTCCCTGAATTATTCTGAAAAAKTAGTTTGTGTTTCTTTTATTCTAAGTTTGTTTTTTATTGGATCTGAATAAACTACAAATTCTTTTTGAGCTAAAAATTTGCAGTTCGAAATTTTTGTGGTTTTCAAATTTCTGGAAAAATTTGCTTATTACAGTTTCTGAATTTTGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37938</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1100702</contig_pos>
        <strand></strand>
        <context>TAAGTTTGTT[T/C]TTTATTGGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTGAATTATTCTGAAAAATTAGTTTGTGTTTCTTTTATTCTAAGTTTGTT</left_flank>
        <right_flank>TTTATTGGATCTGAATAAACTACAAATTCTTTTTGAGCTAAAAATTTGCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTTTAGATAGTTTTTCTGGATTTTTGTGCCATATTTGAAAAATCACTTCCCTTAAATTTTTGAAAATGTTCAAAAATTCCAGCAATTATTCCAAATTTTTTGTTTTGCAAAATTCTGTTCATTTTTTGACCCCGCAAATTGGATAATTCTGAAAAAAGCCTATTTGTCATCTGATCTCCGTTCTGTACACTATTTTTTTTCTCTTTTTTTCTTGAAAAATGGAACCTAACTGTTTGCATTTACTGAGAATTCAGATGATAAATGTGCGAAGACGATGTGCAACGTTGAGAAACTGAGTTCCTCTTCTAGAATTTCCAATTTCGGCTCTCCAAAAAAATGGATATAGGTTTTCATAGGAACTCAAGGAGAAACATAGTTTCCTGTTTTATAAAATCCATTCTGTTCCAATCGAAACTTTTTTTTAAACTTTTGAATTTTCGAATTTCCCTGAATTATTCTGAAAAATTAGTTTGTGTTTCTTTTATTCTAAGTTTGTTTTTTATTGGATCTGAATAAACTACAAATTCTTTTTGAGCTAAAAATTTGCAGTTCGAAATTTTTGTGGTTTTCAAATTTCTGGAAAAATTTGCTTATTACAGTTTCTGAATTTTGGCAGGCCTGGAAATTCGTTTTTTTCTTTTATTAAATTGACTTCGCATAGAATCTCAAACCTATCATTCAGGAACTTAATACTTTTTGAATTCCGACTTCTTATTTTCAAGTACAGTATGATTTCCCACTTTTCTGATTCCATTTTAACAAAAAAGTTCAAAAACTTGCACTGATCTTGTGGCCCCGTCGGACGGGGGTCCCGTCCTCAGGGGAAGTAAAGTTCCGCGAGCCCCAGACAACGTCATGTCGACGTTATGCTTCCTTTTCCTTCGACTGAGTAGTATCATCCAGTAATACACAAAAGAGACAGAGTTTCTATTGGAATCAATTGTCGCTTCGCTGCACTTATTCTTTTTTCCCATTCGCCCTTGTCGCCGCCATTCGGT</canonical>
            <polymorphic>TCTTTTAGATAGTTTTTCTGGATTTTTGTGCCATATTTGAAAAATCACTTCCCTTAAATTTTTGAAAATGTTCAAAAATTCCAGCAATTATTCCAAATTTTTTGTTTTGCAAAATTCTGTTCATTTTTTGACCCCGCAAATTGGATAATTCTGAAAAAAGCCTATTTGTCATCTGATCTCCGTTCTGTACACTATTTTTTTTCTCTTTTTTTCTTGAAAAATGGAACCTAACTGTTTGCATTTACTGAGAATTCAGATGATAAATGTGCGAAGACGATGTGCAACGTTGAGAAACTGAGTTCCTCTTCTAGAATTTCCAATTTCGGCTCTCCAAAAAAATGGATATAGGTTTTCATAGGAACTCAAGGAGAAACATAGTTTCCTGTTTTATAAAATCCATTCTGTTCCAATCGAAACTTTTTTTTAAACTTTTGAATTTTCGAATTTCCCTGAATTATTCTGAAAAATTAGTTTGTGTTTCTTTTATTCTAAGTTTGTTYTTTATTGGATCTGAATAAACTACAAATTCTTTTTGAGCTAAAAATTTGCAGTTCGAAATTTTTGTGGTTTTCAAATTTCTGGAAAAATTTGCTTATTACAGTTTCTGAATTTTGGCAGGCCTGGAAATTCGTTTTTTTCTTTTATTAAATTGACTTCGCATAGAATCTCAAACCTATCATTCAGGAACTTAATACTTTTTGAATTCCGACTTCTTATTTTCAAGTACAGTATGATTTCCCACTTTTCTGATTCCATTTTAACAAAAAAGTTCAAAAACTTGCACTGATCTTGTGGCCCCGTCGGACGGGGGTCCCGTCCTCAGGGGAAGTAAAGTTCCGCGAGCCCCAGACAACGTCATGTCGACGTTATGCTTCCTTTTCCTTCGACTGAGTAGTATCATCCAGTAATACACAAAAGAGACAGAGTTTCTATTGGAATCAATTGTCGCTTCGCTGCACTTATTCTTTTTTCCCATTCGCCCTTGTCGCCGCCATTCGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGAAACATAGTTTCCTGTTTTA</pcr_primer_p1>
		<pcr_primer_p2>GCCAAAATTCAGAAACTGTAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAGAAACATAGTTTCCTGTTTTATAAAATCCATTCTGTTCCAATCGAAACTTTTTTTTAAACTTTTGAATTTTCGAATTTCCCTGAATTATTCTGAAAAATTAGTTTGTGTTTCTTTTATTCTAAGTTTGTTTTTTATTGGATCTGAATAAACTACAAATTCTTTTTGAGCTAAAAATTTGCAGTTCGAAATTTTTGTGGTTTTCAAATTTCTGGAAAAATTTGCTTATTACAGTTTCTGAATTTTGGC</canonical_amplicon>
		<polymorphic_amplicon>GGAGAAACATAGTTTCCTGTTTTATAAAATCCATTCTGTTCCAATCGAAACTTTTTTTTAAACTTTTGAATTTTCGAATTTCCCTGAATTATTCTGAAAAATTAGTTTGTGTTTCTTTTATTCTAAGTTTGTTYTTTATTGGATCTGAATAAACTACAAATTCTTTTTGAGCTAAAAATTTGCAGTTCGAAATTTTTGTGGTTTTCAAATTTCTGGAAAAATTTGCTTATTACAGTTTCTGAATTTTGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37939</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1100875</contig_pos>
        <strand></strand>
        <context>GAATCTCAAA[C/A]CTATCATTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GGAAATTCGTTTTTTTCTTTTATTAAATTGACTTCGCATAGAATCTCAAA</left_flank>
        <right_flank>CTATCATTCAGGAACTTAATACTTTTTGAATTCCGACTTCTTATTTTCAA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATCTCCGTTCTGTACACTATTTTTTTTCTCTTTTTTTCTTGAAAAATGGAACCTAACTGTTTGCATTTACTGAGAATTCAGATGATAAATGTGCGAAGACGATGTGCAACGTTGAGAAACTGAGTTCCTCTTCTAGAATTTCCAATTTCGGCTCTCCAAAAAAATGGATATAGGTTTTCATAGGAACTCAAGGAGAAACATAGTTTCCTGTTTTATAAAATCCATTCTGTTCCAATCGAAACTTTTTTTTAAACTTTTGAATTTTCGAATTTCCCTGAATTATTCTGAAAAATTAGTTTGTGTTTCTTTTATTCTAAGTTTGTTTTTTATTGGATCTGAATAAACTACAAATTCTTTTTGAGCTAAAAATTTGCAGTTCGAAATTTTTGTGGTTTTCAAATTTCTGGAAAAATTTGCTTATTACAGTTTCTGAATTTTGGCAGGCCTGGAAATTCGTTTTTTTCTTTTATTAAATTGACTTCGCATAGAATCTCAAACCTATCATTCAGGAACTTAATACTTTTTGAATTCCGACTTCTTATTTTCAAGTACAGTATGATTTCCCACTTTTCTGATTCCATTTTAACAAAAAAGTTCAAAAACTTGCACTGATCTTGTGGCCCCGTCGGACGGGGGTCCCGTCCTCAGGGGAAGTAAAGTTCCGCGAGCCCCAGACAACGTCATGTCGACGTTATGCTTCCTTTTCCTTCGACTGAGTAGTATCATCCAGTAATACACAAAAGAGACAGAGTTTCTATTGGAATCAATTGTCGCTTCGCTGCACTTATTCTTTTTTCCCATTCGCCCTTGTCGCCGCCATTCGGTGCCCCCGTACACCCCCGGATTCAGCAAGTCCTTCCTGGAGTCATCAGAGAGAAAAGTTCATTTTGCTCATTGTCATTTCATTATATTTTTCTTTTTTTCTCCGCTTTTTATTCTACACACGCTGCCTGTTTTTGTCACATTTGAACCAACCGATCGTTTGAAAAAAAAATGAG</canonical>
            <polymorphic>TGATCTCCGTTCTGTACACTATTTTTTTTCTCTTTTTTTCTTGAAAAATGGAACCTAACTGTTTGCATTTACTGAGAATTCAGATGATAAATGTGCGAAGACGATGTGCAACGTTGAGAAACTGAGTTCCTCTTCTAGAATTTCCAATTTCGGCTCTCCAAAAAAATGGATATAGGTTTTCATAGGAACTCAAGGAGAAACATAGTTTCCTGTTTTATAAAATCCATTCTGTTCCAATCGAAACTTTTTTTTAAACTTTTGAATTTTCGAATTTCCCTGAATTATTCTGAAAAATTAGTTTGTGTTTCTTTTATTCTAAGTTTGTTTTTTATTGGATCTGAATAAACTACAAATTCTTTTTGAGCTAAAAATTTGCAGTTCGAAATTTTTGTGGTTTTCAAATTTCTGGAAAAATTTGCTTATTACAGTTTCTGAATTTTGGCAGGCCTGGAAATTCGTTTTTTTCTTTTATTAAATTGACTTCGCATAGAATCTCAAAMCTATCATTCAGGAACTTAATACTTTTTGAATTCCGACTTCTTATTTTCAAGTACAGTATGATTTCCCACTTTTCTGATTCCATTTTAACAAAAAAGTTCAAAAACTTGCACTGATCTTGTGGCCCCGTCGGACGGGGGTCCCGTCCTCAGGGGAAGTAAAGTTCCGCGAGCCCCAGACAACGTCATGTCGACGTTATGCTTCCTTTTCCTTCGACTGAGTAGTATCATCCAGTAATACACAAAAGAGACAGAGTTTCTATTGGAATCAATTGTCGCTTCGCTGCACTTATTCTTTTTTCCCATTCGCCCTTGTCGCCGCCATTCGGTGCCCCCGTACACCCCCGGATTCAGCAAGTCCTTCCTGGAGTCATCAGAGAGAAAAGTTCATTTTGCTCATTGTCATTTCATTATATTTTTCTTTTTTTCTCCGCTTTTTATTCTACACACGCTGCCTGTTTTTGTCACATTTGAACCAACCGATCGTTTGAAAAAAAAATGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGATCTGAATAAACTACAAATTC</pcr_primer_p1>
		<pcr_primer_p2>ATCAGAAAAGTGGGAAATCATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TGGATCTGAATAAACTACAAATTCTTTTTGAGCTAAAAATTTGCAGTTCGAAATTTTTGTGGTTTTCAAATTTCTGGAAAAATTTGCTTATTACAGTTTCTGAATTTTGGCAGGCCTGGAAATTCGTTTTTTTCTTTTATTAAATTGACTTCGCATAGAATCTCAAACCTATCATTCAGGAACTTAATACTTTTTGAATTCCGACTTCTTATTTTCAAGTACAGTATGATTTCCCACTTTTCTGAT</canonical_amplicon>
		<polymorphic_amplicon>TGGATCTGAATAAACTACAAATTCTTTTTGAGCTAAAAATTTGCAGTTCGAAATTTTTGTGGTTTTCAAATTTCTGGAAAAATTTGCTTATTACAGTTTCTGAATTTTGGCAGGCCTGGAAATTCGTTTTTTTCTTTTATTAAATTGACTTCGCATAGAATCTCAAAMCTATCATTCAGGAACTTAATACTTTTTGAATTCCGACTTCTTATTTTCAAGTACAGTATGATTTCCCACTTTTCTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37940</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1100906</contig_pos>
        <strand></strand>
        <context>ACTTTTTGAA[T/A]TCCGACTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CTTCGCATAGAATCTCAAACCTATCATTCAGGAACTTAATACTTTTTGAA</left_flank>
        <right_flank>TCCGACTTCTTATTTTCAAGTACAGTATGATTTCCCACTTTTCTGATTCC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTTTTCTTGAAAAATGGAACCTAACTGTTTGCATTTACTGAGAATTCAGATGATAAATGTGCGAAGACGATGTGCAACGTTGAGAAACTGAGTTCCTCTTCTAGAATTTCCAATTTCGGCTCTCCAAAAAAATGGATATAGGTTTTCATAGGAACTCAAGGAGAAACATAGTTTCCTGTTTTATAAAATCCATTCTGTTCCAATCGAAACTTTTTTTTAAACTTTTGAATTTTCGAATTTCCCTGAATTATTCTGAAAAATTAGTTTGTGTTTCTTTTATTCTAAGTTTGTTTTTTATTGGATCTGAATAAACTACAAATTCTTTTTGAGCTAAAAATTTGCAGTTCGAAATTTTTGTGGTTTTCAAATTTCTGGAAAAATTTGCTTATTACAGTTTCTGAATTTTGGCAGGCCTGGAAATTCGTTTTTTTCTTTTATTAAATTGACTTCGCATAGAATCTCAAACCTATCATTCAGGAACTTAATACTTTTTGAATTCCGACTTCTTATTTTCAAGTACAGTATGATTTCCCACTTTTCTGATTCCATTTTAACAAAAAAGTTCAAAAACTTGCACTGATCTTGTGGCCCCGTCGGACGGGGGTCCCGTCCTCAGGGGAAGTAAAGTTCCGCGAGCCCCAGACAACGTCATGTCGACGTTATGCTTCCTTTTCCTTCGACTGAGTAGTATCATCCAGTAATACACAAAAGAGACAGAGTTTCTATTGGAATCAATTGTCGCTTCGCTGCACTTATTCTTTTTTCCCATTCGCCCTTGTCGCCGCCATTCGGTGCCCCCGTACACCCCCGGATTCAGCAAGTCCTTCCTGGAGTCATCAGAGAGAAAAGTTCATTTTGCTCATTGTCATTTCATTATATTTTTCTTTTTTTCTCCGCTTTTTATTCTACACACGCTGCCTGTTTTTGTCACATTTGAACCAACCGATCGTTTGAAAAAAAAATGAGAAAAAAGCAAAGAAGCGGAGTCATGAAAAAA</canonical>
            <polymorphic>CTTTTTTTCTTGAAAAATGGAACCTAACTGTTTGCATTTACTGAGAATTCAGATGATAAATGTGCGAAGACGATGTGCAACGTTGAGAAACTGAGTTCCTCTTCTAGAATTTCCAATTTCGGCTCTCCAAAAAAATGGATATAGGTTTTCATAGGAACTCAAGGAGAAACATAGTTTCCTGTTTTATAAAATCCATTCTGTTCCAATCGAAACTTTTTTTTAAACTTTTGAATTTTCGAATTTCCCTGAATTATTCTGAAAAATTAGTTTGTGTTTCTTTTATTCTAAGTTTGTTTTTTATTGGATCTGAATAAACTACAAATTCTTTTTGAGCTAAAAATTTGCAGTTCGAAATTTTTGTGGTTTTCAAATTTCTGGAAAAATTTGCTTATTACAGTTTCTGAATTTTGGCAGGCCTGGAAATTCGTTTTTTTCTTTTATTAAATTGACTTCGCATAGAATCTCAAACCTATCATTCAGGAACTTAATACTTTTTGAAWTCCGACTTCTTATTTTCAAGTACAGTATGATTTCCCACTTTTCTGATTCCATTTTAACAAAAAAGTTCAAAAACTTGCACTGATCTTGTGGCCCCGTCGGACGGGGGTCCCGTCCTCAGGGGAAGTAAAGTTCCGCGAGCCCCAGACAACGTCATGTCGACGTTATGCTTCCTTTTCCTTCGACTGAGTAGTATCATCCAGTAATACACAAAAGAGACAGAGTTTCTATTGGAATCAATTGTCGCTTCGCTGCACTTATTCTTTTTTCCCATTCGCCCTTGTCGCCGCCATTCGGTGCCCCCGTACACCCCCGGATTCAGCAAGTCCTTCCTGGAGTCATCAGAGAGAAAAGTTCATTTTGCTCATTGTCATTTCATTATATTTTTCTTTTTTTCTCCGCTTTTTATTCTACACACGCTGCCTGTTTTTGTCACATTTGAACCAACCGATCGTTTGAAAAAAAAATGAGAAAAAAGCAAAGAAGCGGAGTCATGAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>503 123 82 76 62 45 22 18 18 17 14 12 8</canonical_bands>
                <polymorphic_bands>579 123 82 62 45 22 18 18 17 14 12 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>503 452 45</canonical_bands>
                <polymorphic_bands>955 45</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>264 239 116 62 59 54 45 22 22 18 18 17 14 13 12 10 8 7</canonical_bands>
                <polymorphic_bands>293 264 116 62 59 45 22 22 18 18 17 14 13 12 10 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGACTTCGCATAGAATCTC</pcr_primer_p1>
		<pcr_primer_p2>GATACTACTCAGTCGAAGGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AATTGACTTCGCATAGAATCTCAAACCTATCATTCAGGAACTTAATACTTTTTGAATTCCGACTTCTTATTTTCAAGTACAGTATGATTTCCCACTTTTCTGATTCCATTTTAACAAAAAAGTTCAAAAACTTGCACTGATCTTGTGGCCCCGTCGGACGGGGGTCCCGTCCTCAGGGGAAGTAAAGTTCCGCGAGCCCCAGACAACGTCATGTCGACGTTATGCTTCCTTTTCCTTCGACTGAGTAGTATC</canonical_amplicon>
		<polymorphic_amplicon>AATTGACTTCGCATAGAATCTCAAACCTATCATTCAGGAACTTAATACTTTTTGAAWTCCGACTTCTTATTTTCAAGTACAGTATGATTTCCCACTTTTCTGATTCCATTTTAACAAAAAAGTTCAAAAACTTGCACTGATCTTGTGGCCCCGTCGGACGGGGGTCCCGTCCTCAGGGGAAGTAAAGTTCCGCGAGCCCCAGACAACGTCATGTCGACGTTATGCTTCCTTTTCCTTCGACTGAGTAGTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37941</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1100989</contig_pos>
        <strand></strand>
        <context>ACTTGCACTG[A/G]TCTTGTGGCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCCACTTTTCTGATTCCATTTTAACAAAAAAGTTCAAAAACTTGCACTG</left_flank>
        <right_flank>TCTTGTGGCCCCGTCGGACGGGGGTCCCGTCCTCAGGGGAAGTAAAGTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGAAACTGAGTTCCTCTTCTAGAATTTCCAATTTCGGCTCTCCAAAAAAATGGATATAGGTTTTCATAGGAACTCAAGGAGAAACATAGTTTCCTGTTTTATAAAATCCATTCTGTTCCAATCGAAACTTTTTTTTAAACTTTTGAATTTTCGAATTTCCCTGAATTATTCTGAAAAATTAGTTTGTGTTTCTTTTATTCTAAGTTTGTTTTTTATTGGATCTGAATAAACTACAAATTCTTTTTGAGCTAAAAATTTGCAGTTCGAAATTTTTGTGGTTTTCAAATTTCTGGAAAAATTTGCTTATTACAGTTTCTGAATTTTGGCAGGCCTGGAAATTCGTTTTTTTCTTTTATTAAATTGACTTCGCATAGAATCTCAAACCTATCATTCAGGAACTTAATACTTTTTGAATTCCGACTTCTTATTTTCAAGTACAGTATGATTTCCCACTTTTCTGATTCCATTTTAACAAAAAAGTTCAAAAACTTGCACTGATCTTGTGGCCCCGTCGGACGGGGGTCCCGTCCTCAGGGGAAGTAAAGTTCCGCGAGCCCCAGACAACGTCATGTCGACGTTATGCTTCCTTTTCCTTCGACTGAGTAGTATCATCCAGTAATACACAAAAGAGACAGAGTTTCTATTGGAATCAATTGTCGCTTCGCTGCACTTATTCTTTTTTCCCATTCGCCCTTGTCGCCGCCATTCGGTGCCCCCGTACACCCCCGGATTCAGCAAGTCCTTCCTGGAGTCATCAGAGAGAAAAGTTCATTTTGCTCATTGTCATTTCATTATATTTTTCTTTTTTTCTCCGCTTTTTATTCTACACACGCTGCCTGTTTTTGTCACATTTGAACCAACCGATCGTTTGAAAAAAAAATGAGAAAAAAGCAAAGAAGCGGAGTCATGAAAAAAGAGAGAAATGGAAAAAAAGATTGAATTGAAATGGAAATAATTTGAGATCGAATAACAAAAAGTTTTTTTTGTTAGTTTGCAAT</canonical>
            <polymorphic>TGAGAAACTGAGTTCCTCTTCTAGAATTTCCAATTTCGGCTCTCCAAAAAAATGGATATAGGTTTTCATAGGAACTCAAGGAGAAACATAGTTTCCTGTTTTATAAAATCCATTCTGTTCCAATCGAAACTTTTTTTTAAACTTTTGAATTTTCGAATTTCCCTGAATTATTCTGAAAAATTAGTTTGTGTTTCTTTTATTCTAAGTTTGTTTTTTATTGGATCTGAATAAACTACAAATTCTTTTTGAGCTAAAAATTTGCAGTTCGAAATTTTTGTGGTTTTCAAATTTCTGGAAAAATTTGCTTATTACAGTTTCTGAATTTTGGCAGGCCTGGAAATTCGTTTTTTTCTTTTATTAAATTGACTTCGCATAGAATCTCAAACCTATCATTCAGGAACTTAATACTTTTTGAATTCCGACTTCTTATTTTCAAGTACAGTATGATTTCCCACTTTTCTGATTCCATTTTAACAAAAAAGTTCAAAAACTTGCACTGRTCTTGTGGCCCCGTCGGACGGGGGTCCCGTCCTCAGGGGAAGTAAAGTTCCGCGAGCCCCAGACAACGTCATGTCGACGTTATGCTTCCTTTTCCTTCGACTGAGTAGTATCATCCAGTAATACACAAAAGAGACAGAGTTTCTATTGGAATCAATTGTCGCTTCGCTGCACTTATTCTTTTTTCCCATTCGCCCTTGTCGCCGCCATTCGGTGCCCCCGTACACCCCCGGATTCAGCAAGTCCTTCCTGGAGTCATCAGAGAGAAAAGTTCATTTTGCTCATTGTCATTTCATTATATTTTTCTTTTTTTCTCCGCTTTTTATTCTACACACGCTGCCTGTTTTTGTCACATTTGAACCAACCGATCGTTTGAAAAAAAAATGAGAAAAAAGCAAAGAAGCGGAGTCATGAAAAAAGAGAGAAATGGAAAAAAAGATTGAATTGAAATGGAAATAATTTGAGATCGAATAACAAAAAGTTTTTTTTGTTAGTTTGCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>366 278 220 98 38</canonical_bands>
                <polymorphic_bands>644 220 98 38</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGACTTCGCATAGAATCTC</pcr_primer_p1>
		<pcr_primer_p2>GATACTACTCAGTCGAAGGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AATTGACTTCGCATAGAATCTCAAACCTATCATTCAGGAACTTAATACTTTTTGAATTCCGACTTCTTATTTTCAAGTACAGTATGATTTCCCACTTTTCTGATTCCATTTTAACAAAAAAGTTCAAAAACTTGCACTGATCTTGTGGCCCCGTCGGACGGGGGTCCCGTCCTCAGGGGAAGTAAAGTTCCGCGAGCCCCAGACAACGTCATGTCGACGTTATGCTTCCTTTTCCTTCGACTGAGTAGTATC</canonical_amplicon>
		<polymorphic_amplicon>AATTGACTTCGCATAGAATCTCAAACCTATCATTCAGGAACTTAATACTTTTTGAATTCCGACTTCTTATTTTCAAGTACAGTATGATTTCCCACTTTTCTGATTCCATTTTAACAAAAAAGTTCAAAAACTTGCACTGRTCTTGTGGCCCCGTCGGACGGGGGTCCCGTCCTCAGGGGAAGTAAAGTTCCGCGAGCCCCAGACAACGTCATGTCGACGTTATGCTTCCTTTTCCTTCGACTGAGTAGTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37942</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1101033</contig_pos>
        <strand></strand>
        <context>CAGGGGAAGT[A/T]AAGTTCCGCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCACTGATCTTGTGGCCCCGTCGGACGGGGGTCCCGTCCTCAGGGGAAGT</left_flank>
        <right_flank>AAGTTCCGCGAGCCCCAGACAACGTCATGTCGACGTTATGCTTCCTTTTC</right_flank>
        <qual_score>33</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAAAATGGATATAGGTTTTCATAGGAACTCAAGGAGAAACATAGTTTCCTGTTTTATAAAATCCATTCTGTTCCAATCGAAACTTTTTTTTAAACTTTTGAATTTTCGAATTTCCCTGAATTATTCTGAAAAATTAGTTTGTGTTTCTTTTATTCTAAGTTTGTTTTTTATTGGATCTGAATAAACTACAAATTCTTTTTGAGCTAAAAATTTGCAGTTCGAAATTTTTGTGGTTTTCAAATTTCTGGAAAAATTTGCTTATTACAGTTTCTGAATTTTGGCAGGCCTGGAAATTCGTTTTTTTCTTTTATTAAATTGACTTCGCATAGAATCTCAAACCTATCATTCAGGAACTTAATACTTTTTGAATTCCGACTTCTTATTTTCAAGTACAGTATGATTTCCCACTTTTCTGATTCCATTTTAACAAAAAAGTTCAAAAACTTGCACTGATCTTGTGGCCCCGTCGGACGGGGGTCCCGTCCTCAGGGGAAGTAAAGTTCCGCGAGCCCCAGACAACGTCATGTCGACGTTATGCTTCCTTTTCCTTCGACTGAGTAGTATCATCCAGTAATACACAAAAGAGACAGAGTTTCTATTGGAATCAATTGTCGCTTCGCTGCACTTATTCTTTTTTCCCATTCGCCCTTGTCGCCGCCATTCGGTGCCCCCGTACACCCCCGGATTCAGCAAGTCCTTCCTGGAGTCATCAGAGAGAAAAGTTCATTTTGCTCATTGTCATTTCATTATATTTTTCTTTTTTTCTCCGCTTTTTATTCTACACACGCTGCCTGTTTTTGTCACATTTGAACCAACCGATCGTTTGAAAAAAAAATGAGAAAAAAGCAAAGAAGCGGAGTCATGAAAAAAGAGAGAAATGGAAAAAAAGATTGAATTGAAATGGAAATAATTTGAGATCGAATAACAAAAAGTTTTTTTTGTTAGTTTGCAATTTTTTGAGAACAAGGTCCCAGATTTCAAAGAAATCTAGACTACA</canonical>
            <polymorphic>CAAAAAAATGGATATAGGTTTTCATAGGAACTCAAGGAGAAACATAGTTTCCTGTTTTATAAAATCCATTCTGTTCCAATCGAAACTTTTTTTTAAACTTTTGAATTTTCGAATTTCCCTGAATTATTCTGAAAAATTAGTTTGTGTTTCTTTTATTCTAAGTTTGTTTTTTATTGGATCTGAATAAACTACAAATTCTTTTTGAGCTAAAAATTTGCAGTTCGAAATTTTTGTGGTTTTCAAATTTCTGGAAAAATTTGCTTATTACAGTTTCTGAATTTTGGCAGGCCTGGAAATTCGTTTTTTTCTTTTATTAAATTGACTTCGCATAGAATCTCAAACCTATCATTCAGGAACTTAATACTTTTTGAATTCCGACTTCTTATTTTCAAGTACAGTATGATTTCCCACTTTTCTGATTCCATTTTAACAAAAAAGTTCAAAAACTTGCACTGATCTTGTGGCCCCGTCGGACGGGGGTCCCGTCCTCAGGGGAAGTWAAGTTCCGCGAGCCCCAGACAACGTCATGTCGACGTTATGCTTCCTTTTCCTTCGACTGAGTAGTATCATCCAGTAATACACAAAAGAGACAGAGTTTCTATTGGAATCAATTGTCGCTTCGCTGCACTTATTCTTTTTTCCCATTCGCCCTTGTCGCCGCCATTCGGTGCCCCCGTACACCCCCGGATTCAGCAAGTCCTTCCTGGAGTCATCAGAGAGAAAAGTTCATTTTGCTCATTGTCATTTCATTATATTTTTCTTTTTTTCTCCGCTTTTTATTCTACACACGCTGCCTGTTTTTGTCACATTTGAACCAACCGATCGTTTGAAAAAAAAATGAGAAAAAAGCAAAGAAGCGGAGTCATGAAAAAAGAGAGAAATGGAAAAAAAGATTGAATTGAAATGGAAATAATTTGAGATCGAATAACAAAAAGTTTTTTTTGTTAGTTTGCAATTTTTTGAGAACAAGGTCCCAGATTTCAAAGAAATCTAGACTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGACTTCGCATAGAATCTC</pcr_primer_p1>
		<pcr_primer_p2>GATACTACTCAGTCGAAGGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AATTGACTTCGCATAGAATCTCAAACCTATCATTCAGGAACTTAATACTTTTTGAATTCCGACTTCTTATTTTCAAGTACAGTATGATTTCCCACTTTTCTGATTCCATTTTAACAAAAAAGTTCAAAAACTTGCACTGATCTTGTGGCCCCGTCGGACGGGGGTCCCGTCCTCAGGGGAAGTAAAGTTCCGCGAGCCCCAGACAACGTCATGTCGACGTTATGCTTCCTTTTCCTTCGACTGAGTAGTATC</canonical_amplicon>
		<polymorphic_amplicon>AATTGACTTCGCATAGAATCTCAAACCTATCATTCAGGAACTTAATACTTTTTGAATTCCGACTTCTTATTTTCAAGTACAGTATGATTTCCCACTTTTCTGATTCCATTTTAACAAAAAAGTTCAAAAACTTGCACTGATCTTGTGGCCCCGTCGGACGGGGGTCCCGTCCTCAGGGGAAGTWAAGTTCCGCGAGCCCCAGACAACGTCATGTCGACGTTATGCTTCCTTTTCCTTCGACTGAGTAGTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37943</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1105828</contig_pos>
        <strand>+</strand>
        <context>AATTGATTGG[A/G]TTTTTTTCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGG</left_flank>
        <right_flank>TTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAACCCGGAATTTTCCGGATTCGCTGTAAATTTCTTATTAGAGTGTAGGAGTATAGTAGGATACATTCATTTCATCTGCAGCCAACTCAAGAGGGAGCTCTGGCGTTTAATAAGCTCATTTTCAATTCACAAGACGTTACATGAGACGGATCTAGCAAGTTGGTCAACTTCACATAAACTCTCCTTTTATTACTTTAGTTTCATTTTTCCTCTTTCCTTGGACAGAAAAAGTTTCTACATCGCTTTGTTTGAGCTGAACATCCTGTCATCTGAACTAGCTCTGTTTGTCATTCATTGTCACGCACACAGACATCCTAATGAATGACAATTACTGTTTCTTCTCTTTTCCGGAAACCCAGACACGTCATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAGGTCAAAAGTGGTTTGTATAGTAAAAGCTAAAAAAAGAAACCGGTATCGTTTCCCACTAGTATTCCATTATACCGTCTATAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATT</canonical>
            <polymorphic>TGAACCCGGAATTTTCCGGATTCGCTGTAAATTTCTTATTAGAGTGTAGGAGTATAGTAGGATACATTCATTTCATCTGCAGCCAACTCAAGAGGGAGCTCTGGCGTTTAATAAGCTCATTTTCAATTCACAAGACGTTACATGAGACGGATCTAGCAAGTTGGTCAACTTCACATAAACTCTCCTTTTATTACTTTAGTTTCATTTTTCCTCTTTCCTTGGACAGAAAAAGTTTCTACATCGCTTTGTTTGAGCTGAACATCCTGTCATCTGAACTAGCTCTGTTTGTCATTCATTGTCACGCACACAGACATCCTAATGAATGACAATTACTGTTTCTTCTCTTTTCCGGAAACCCAGACACGTCATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGRTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAGGTCAAAAGTGGTTTGTATAGTAAAAGCTAAAAAAAGAAACCGGTATCGTTTCCCACTAGTATTCCATTATACCGTCTATAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTGAGGCGCATATTTTAG</pcr_primer_p1>
		<pcr_primer_p2>ATTGTGTCAGGTGACTAGTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAAT</canonical_amplicon>
		<polymorphic_amplicon>ATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGRTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37944</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1106123</contig_pos>
        <strand>+</strand>
        <context>TAGGGGAACA[C/T]AATATATACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACA</left_flank>
        <right_flank>AATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTCACGCACACAGACATCCTAATGAATGACAATTACTGTTTCTTCTCTTTTCCGGAAACCCAGACACGTCATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAGGTCAAAAGTGGTTTGTATAGTAAAAGCTAAAAAAAGAAACCGGTATCGTTTCCCACTAGTATTCCATTATACCGTCTATAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGATATTTTGAAAGTGTTTAATCTGCATTTTCCGATTTTTAAATTATTCAGATTTTCCACTTCAAGCAAGTTCTCCAGGTTGATGAGATTTTGCAAAATGTAAATCTGAAAAATTGGCATAATTTGAAAAAGTTAAATGAATTGAAAACTTACAGAAATGTAACAATTTTTAAAACAATTTCCTAGATATTGTTTATTGACTTCAAGAAAATAATTTTCAGCTGTTTCTAATCTTTCTAATTTTTCTATAGAATTTTAAAATTGTATTCTTCAAA</canonical>
            <polymorphic>TTGTCACGCACACAGACATCCTAATGAATGACAATTACTGTTTCTTCTCTTTTCCGGAAACCCAGACACGTCATTCTGAGGCGCATATTTTAGCTCACCCGATTTTTTCAAAGCTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAGGTCAAAAGTGGTTTGTATAGTAAAAGCTAAAAAAAGAAACCGGTATCGTTTCCCACTAGTATTCCATTATACCGTCTATAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACAYAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGATATTTTGAAAGTGTTTAATCTGCATTTTCCGATTTTTAAATTATTCAGATTTTCCACTTCAAGCAAGTTCTCCAGGTTGATGAGATTTTGCAAAATGTAAATCTGAAAAATTGGCATAATTTGAAAAAGTTAAATGAATTGAAAACTTACAGAAATGTAACAATTTTTAAAACAATTTCCTAGATATTGTTTATTGACTTCAAGAAAATAATTTTCAGCTGTTTCTAATCTTTCTAATTTTTCTATAGAATTTTAAAATTGTATTCTTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTTGAAATTTGGGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TCAAAAACCTAGAACAATTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>308</pcr_amplicon_size>
		<canonical_amplicon>GAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGA</canonical_amplicon>
		<polymorphic_amplicon>GAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACAYAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37945</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1106236</contig_pos>
        <strand></strand>
        <context>gatttatcag[T/C]taacwatttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAG</left_flank>
        <right_flank>TAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAGGTCAAAAGTGGTTTGTATAGTAAAAGCTAAAAAAAGAAACCGGTATCGTTTCCCACTAGTATTCCATTATACCGTCTATAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGATATTTTGAAAGTGTTTAATCTGCATTTTCCGATTTTTAAATTATTCAGATTTTCCACTTCAAGCAAGTTCTCCAGGTTGATGAGATTTTGCAAAATGTAAATCTGAAAAATTGGCATAATTTGAAAAAGTTAAATGAATTGAAAACTTACAGAAATGTAACAATTTTTAAAACAATTTCCTAGATATTGTTTATTGACTTCAAGAAAATAATTTTCAGCTGTTTCTAATCTTTCTAATTTTTCTATAGAATTTTAAAATTGTATTCTTCAAAATTTTCGACGCGTTTGCGCTTTTTGAATATACAGTGTCAATGTTACAGGATCCAGATTGATTCGGGTTCCGGCACATAATTCAGAGCGTACAATCATTCGGGAGTATAAGGGG</canonical>
            <polymorphic>CTAACTCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAGGTCAAAAGTGGTTTGTATAGTAAAAGCTAAAAAAAGAAACCGGTATCGTTTCCCACTAGTATTCCATTATACCGTCTATAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGYTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGATATTTTGAAAGTGTTTAATCTGCATTTTCCGATTTTTAAATTATTCAGATTTTCCACTTCAAGCAAGTTCTCCAGGTTGATGAGATTTTGCAAAATGTAAATCTGAAAAATTGGCATAATTTGAAAAAGTTAAATGAATTGAAAACTTACAGAAATGTAACAATTTTTAAAACAATTTCCTAGATATTGTTTATTGACTTCAAGAAAATAATTTTCAGCTGTTTCTAATCTTTCTAATTTTTCTATAGAATTTTAAAATTGTATTCTTCAAAATTTTCGACGCGTTTGCGCTTTTTGAATATACAGTGTCAATGTTACAGGATCCAGATTGATTCGGGTTCCGGCACATAATTCAGAGCGTACAATCATTCGGGAGTATAAGGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTTAAC</site>
                <isoschizomers>
                    <enzyme>BstHPI</enzyme>
                    <enzyme>HpaI</enzyme>
                    <enzyme>KspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>499 456 45</canonical_bands>
                <polymorphic_bands>544 456</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 456 45</canonical_bands>
                <polymorphic_bands>544 456</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>330 162 132 94 91 86 39 37 21 8</canonical_bands>
                <polymorphic_bands>330 201 132 94 91 86 37 21 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTGACATTAGGGGAAC</pcr_primer_p1>
		<pcr_primer_p2>TCAAAAACCTAGAACAATTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGA</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGYTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37946</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1106241</contig_pos>
        <strand></strand>
        <context>atcagytaac[A/T]atttttcgat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAAC</left_flank>
        <right_flank>ATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCAC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAGGTCAAAAGTGGTTTGTATAGTAAAAGCTAAAAAAAGAAACCGGTATCGTTTCCCACTAGTATTCCATTATACCGTCTATAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGATATTTTGAAAGTGTTTAATCTGCATTTTCCGATTTTTAAATTATTCAGATTTTCCACTTCAAGCAAGTTCTCCAGGTTGATGAGATTTTGCAAAATGTAAATCTGAAAAATTGGCATAATTTGAAAAAGTTAAATGAATTGAAAACTTACAGAAATGTAACAATTTTTAAAACAATTTCCTAGATATTGTTTATTGACTTCAAGAAAATAATTTTCAGCTGTTTCTAATCTTTCTAATTTTTCTATAGAATTTTAAAATTGTATTCTTCAAAATTTTCGACGCGTTTGCGCTTTTTGAATATACAGTGTCAATGTTACAGGATCCAGATTGATTCGGGTTCCGGCACATAATTCAGAGCGTACAATCATTCGGGAGTATAAGGGGTACAA</canonical>
            <polymorphic>TCTTGAGCTAACGTAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAGGTCAAAAGTGGTTTGTATAGTAAAAGCTAAAAAAAGAAACCGGTATCGTTTCCCACTAGTATTCCATTATACCGTCTATAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACWATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGATATTTTGAAAGTGTTTAATCTGCATTTTCCGATTTTTAAATTATTCAGATTTTCCACTTCAAGCAAGTTCTCCAGGTTGATGAGATTTTGCAAAATGTAAATCTGAAAAATTGGCATAATTTGAAAAAGTTAAATGAATTGAAAACTTACAGAAATGTAACAATTTTTAAAACAATTTCCTAGATATTGTTTATTGACTTCAAGAAAATAATTTTCAGCTGTTTCTAATCTTTCTAATTTTTCTATAGAATTTTAAAATTGTATTCTTCAAAATTTTCGACGCGTTTGCGCTTTTTGAATATACAGTGTCAATGTTACAGGATCCAGATTGATTCGGGTTCCGGCACATAATTCAGAGCGTACAATCATTCGGGAGTATAAGGGGTACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>233 81 78 70 57 56 50 43 41 41 36 34 26 26 25 19 19 15 13 12 9 8 8</canonical_bands>
                <polymorphic_bands>233 99 81 78 70 57 50 41 41 36 34 26 26 25 19 19 15 13 12 9 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTGACATTAGGGGAAC</pcr_primer_p1>
		<pcr_primer_p2>TCAAAAACCTAGAACAATTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGA</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACWATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37947</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1106254</contig_pos>
        <strand></strand>
        <context>ttttcgatat[C/A]gtttgaagga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATAT</left_flank>
        <right_flank>GTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAGGTCAAAAGTGGTTTGTATAGTAAAAGCTAAAAAAAGAAACCGGTATCGTTTCCCACTAGTATTCCATTATACCGTCTATAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGATATTTTGAAAGTGTTTAATCTGCATTTTCCGATTTTTAAATTATTCAGATTTTCCACTTCAAGCAAGTTCTCCAGGTTGATGAGATTTTGCAAAATGTAAATCTGAAAAATTGGCATAATTTGAAAAAGTTAAATGAATTGAAAACTTACAGAAATGTAACAATTTTTAAAACAATTTCCTAGATATTGTTTATTGACTTCAAGAAAATAATTTTCAGCTGTTTCTAATCTTTCTAATTTTTCTATAGAATTTTAAAATTGTATTCTTCAAAATTTTCGACGCGTTTGCGCTTTTTGAATATACAGTGTCAATGTTACAGGATCCAGATTGATTCGGGTTCCGGCACATAATTCAGAGCGTACAATCATTCGGGAGTATAAGGGGTACAAAGTGATTTAGGGG</canonical>
            <polymorphic>TAACTCTATTTTTTTCTAATAATGTCTGCAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAGGTCAAAAGTGGTTTGTATAGTAAAAGCTAAAAAAAGAAACCGGTATCGTTTCCCACTAGTATTCCATTATACCGTCTATAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATMGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGATATTTTGAAAGTGTTTAATCTGCATTTTCCGATTTTTAAATTATTCAGATTTTCCACTTCAAGCAAGTTCTCCAGGTTGATGAGATTTTGCAAAATGTAAATCTGAAAAATTGGCATAATTTGAAAAAGTTAAATGAATTGAAAACTTACAGAAATGTAACAATTTTTAAAACAATTTCCTAGATATTGTTTATTGACTTCAAGAAAATAATTTTCAGCTGTTTCTAATCTTTCTAATTTTTCTATAGAATTTTAAAATTGTATTCTTCAAAATTTTCGACGCGTTTGCGCTTTTTGAATATACAGTGTCAATGTTACAGGATCCAGATTGATTCGGGTTCCGGCACATAATTCAGAGCGTACAATCATTCGGGAGTATAAGGGGTACAAAGTGATTTAGGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>503 301 123 73</canonical_bands>
                <polymorphic_bands>576 301 123</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTGACATTAGGGGAAC</pcr_primer_p1>
		<pcr_primer_p2>TCAAAAACCTAGAACAATTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGA</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATMGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37948</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1106282</contig_pos>
        <strand></strand>
        <context>tatttaagct[C/T]aaattgcaca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCT</left_flank>
        <right_flank>AAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAG</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAGGTCAAAAGTGGTTTGTATAGTAAAAGCTAAAAAAAGAAACCGGTATCGTTTCCCACTAGTATTCCATTATACCGTCTATAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGATATTTTGAAAGTGTTTAATCTGCATTTTCCGATTTTTAAATTATTCAGATTTTCCACTTCAAGCAAGTTCTCCAGGTTGATGAGATTTTGCAAAATGTAAATCTGAAAAATTGGCATAATTTGAAAAAGTTAAATGAATTGAAAACTTACAGAAATGTAACAATTTTTAAAACAATTTCCTAGATATTGTTTATTGACTTCAAGAAAATAATTTTCAGCTGTTTCTAATCTTTCTAATTTTTCTATAGAATTTTAAAATTGTATTCTTCAAAATTTTCGACGCGTTTGCGCTTTTTGAATATACAGTGTCAATGTTACAGGATCCAGATTGATTCGGGTTCCGGCACATAATTCAGAGCGTACAATCATTCGGGAGTATAAGGGGTACAAAGTGATTTAGGGGTACAAACCCCGCGATTCGTGGATACGAA</canonical>
            <polymorphic>CAAACCTCCAATTTTTATATAGTATCGCGTGTTCGAATTGATTGGTTTTTTTTCTCAATATGTGCGAAACAAAAAACGGAGCAGAATAATGGGATATCAATAAGTTACGACTAGGGTAGAAATCTCTAGTTATACTCAACTAGTCACCTGACACAATGCCTGTTAGGTCAAAAGTGGTTTGTATAGTAAAAGCTAAAAAAAGAAACCGGTATCGTTTCCCACTAGTATTCCATTATACCGTCTATAAGCATGCGATAGTGTGAGTTGAAATTTGGGAAAAAACTTAAAATTTTAAAAATAACTGAAACGTTTCGACTCGAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTYAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGATATTTTGAAAGTGTTTAATCTGCATTTTCCGATTTTTAAATTATTCAGATTTTCCACTTCAAGCAAGTTCTCCAGGTTGATGAGATTTTGCAAAATGTAAATCTGAAAAATTGGCATAATTTGAAAAAGTTAAATGAATTGAAAACTTACAGAAATGTAACAATTTTTAAAACAATTTCCTAGATATTGTTTATTGACTTCAAGAAAATAATTTTCAGCTGTTTCTAATCTTTCTAATTTTTCTATAGAATTTTAAAATTGTATTCTTCAAAATTTTCGACGCGTTTGCGCTTTTTGAATATACAGTGTCAATGTTACAGGATCCAGATTGATTCGGGTTCCGGCACATAATTCAGAGCGTACAATCATTCGGGAGTATAAGGGGTACAAAGTGATTTAGGGGTACAAACCCCGCGATTCGTGGATACGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTGACATTAGGGGAAC</pcr_primer_p1>
		<pcr_primer_p2>TCAAAAACCTAGAACAATTCTGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTCAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGA</canonical_amplicon>
		<polymorphic_amplicon>GAAAATTGACATTAGGGGAACATAATATATACATTTACCGTATTCTTGAGCTCATTTATCTAGCTTTTTGTGAAAGATATCAAAAATTTGTCAACTGATAAAATATTGGTGGTATTGTGATAAATGATTTATCAGTTAACAATTTTTCGATATCGTTTGAAGGAACCGAGATATTTAAGCTYAAATTGCACATACAGGGTGGGCTTCTATCAGAGCAAGTACGAAATTTCAGAATTGTTCTAGGTTTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37949</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1137366</contig_pos>
        <strand>+</strand>
        <context>ACGACGATTC[G/T]ATTARAAATG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATATAGTTTGAATATGAAAATAGATATTTGAAAACTCTAAACGACGATTC</left_flank>
        <right_flank>ATTAGAAATGTTTCAAACTCCCAGTCGAGAGTTTATAGTTTATGGTTTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGGCGGGGGAACGGTGGGACGGATGGAGGAGAGATGGTGTCTAATTGGGGTAAGACGGGGGACGGCGGGATGGGTTTGGAAGATGGTGTGTGAGCAGCACCGGTGGGTACTGTAGGTAGGGAAGAACTAGTCACGAGCAGAGAAAGAAAAAGATTCCCATTTGGATCGATGGAAAGACAGTCCTTCTCTGCTCTTCCACCCGTCTCCTTTCGTGCCACCCAGTATGTTTCTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGAAGGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCAGCACGGGTGGGTACTGTAGAGTGAATCAACACTCTAGATGGACACCCTAGACGGAACTTTGAACATCCTAGAATATAGTTTGAATATGAAAATAGATATTTGAAAACTCTAAACGACGATTCGATTAGAAATGTTTCAAACTCCCAGTCGAGAGTTTATAGTTTATGGTTTGGTCTGTGTGGTGAGGGTAGCATATTTATCAGCCAACTTTCTGAAAACTTCATAAAATTGTTTCGAGAACTCAACTAAGCTCAAAAGTATCTGCTTCACGTTGAAGCTAAGTTTTAATAAGCTATTATAAGTTTTAAAAATGGCTAGCGGCTCAAGGAGTTTCTGATGCTCTTAGATTTTTCCCTAAAGAACTGACGGTGTGGTCCACGGCTGCCTAACTACTGCGTGAAAATGTTTTTCTAGTTCCAAAGTTTCAGTAGTTCGATCGAAGGAAAAGCAGACCCCCTCTGCCTTTACACCCGTCTCCCCTCGTGTCACCTTTTATGTTTTTGAGTTGCAACGTTCAAAGTTTGTCTAATTGGGGGACGGCGGGTCGGATGGAAGAGAGATGGAAGAGAGATGGTGTGTGAGCGGCACGGTGGGATACTGTAGAGTGAATCATCACTCTAGAT</canonical>
            <polymorphic>TTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGGCGGGGGAACGGTGGGACGGATGGAGGAGAGATGGTGTCTAATTGGGGTAAGACGGGGGACGGCGGGATGGGTTTGGAAGATGGTGTGTGAGCAGCACCGGTGGGTACTGTAGGTAGGGAAGAACTAGTCACGAGCAGAGAAAGAAAAAGATTCCCATTTGGATCGATGGAAAGACAGTCCTTCTCTGCTCTTCCACCCGTCTCCTTTCGTGCCACCCAGTATGTTTCTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGAAGGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCAGCACGGGTGGGTACTGTAGAGTGAATCAACACTCTAGATGGACACCCTAGACGGAACTTTGAACATCCTAGAATATAGTTTGAATATGAAAATAGATATTTGAAAACTCTAAACGACGATTCKATTAGAAATGTTTCAAACTCCCAGTCGAGAGTTTATAGTTTATGGTTTGGTCTGTGTGGTGAGGGTAGCATATTTATCAGCCAACTTTCTGAAAACTTCATAAAATTGTTTCGAGAACTCAACTAAGCTCAAAAGTATCTGCTTCACGTTGAAGCTAAGTTTTAATAAGCTATTATAAGTTTTAAAAATGGCTAGCGGCTCAAGGAGTTTCTGATGCTCTTAGATTTTTCCCTAAAGAACTGACGGTGTGGTCCACGGCTGCCTAACTACTGCGTGAAAATGTTTTTCTAGTTCCAAAGTTTCAGTAGTTCGATCGAAGGAAAAGCAGACCCCCTCTGCCTTTACACCCGTCTCCCCTCGTGTCACCTTTTATGTTTTTGAGTTGCAACGTTCAAAGTTTGTCTAATTGGGGGACGGCGGGTCGGATGGAAGAGAGATGGAAGAGAGATGGTGTGTGAGCGGCACGGTGGGATACTGTAGAGTGAATCATCACTCTAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>202 200 199 185 86 65 27 14 14 4 4</canonical_bands>
                <polymorphic_bands>229 200 199 185 86 65 14 14 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGGGTACTGTAGAGTGAATCAA</pcr_primer_p1>
		<pcr_primer_p2>TAGTTGAGTTCTCGAAACAATTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTGGGTACTGTAGAGTGAATCAACACTCTAGATGGACACCCTAGACGGAACTTTGAACATCCTAGAATATAGTTTGAATATGAAAATAGATATTTGAAAACTCTAAACGACGATTCGATTAGAAATGTTTCAAACTCCCAGTCGAGAGTTTATAGTTTATGGTTTGGTCTGTGTGGTGAGGGTAGCATATTTATCAGCCAACTTTCTGAAAACTTCATAAAATTGTTTCGAGAACTCAACTA</canonical_amplicon>
		<polymorphic_amplicon>GTGGGTACTGTAGAGTGAATCAACACTCTAGATGGACACCCTAGACGGAACTTTGAACATCCTAGAATATAGTTTGAATATGAAAATAGATATTTGAAAACTCTAAACGACGATTCKATTAGAAATGTTTCAAACTCCCAGTCGAGAGTTTATAGTTTATGGTTTGGTCTGTGTGGTGAGGGTAGCATATTTATCAGCCAACTTTCTGAAAACTTCATAAAATTGTTTCGAGAACTCAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37950</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1137501</contig_pos>
        <strand>+</strand>
        <context>AAGCTCAAAA[A/G]TATCTGCTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTCTGAAAACTTCATAAAATTGTTTCGAGAACTCAACTAAGCTCAAAA</left_flank>
        <right_flank>TATCTGCTTCACGTTGAAGCTAAGTTTTAATAAGCTATTATAAGTTTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGTGTGAGCAGCACCGGTGGGTACTGTAGGTAGGGAAGAACTAGTCACGAGCAGAGAAAGAAAAAGATTCCCATTTGGATCGATGGAAAGACAGTCCTTCTCTGCTCTTCCACCCGTCTCCTTTCGTGCCACCCAGTATGTTTCTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGAAGGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCAGCACGGGTGGGTACTGTAGAGTGAATCAACACTCTAGATGGACACCCTAGACGGAACTTTGAACATCCTAGAATATAGTTTGAATATGAAAATAGATATTTGAAAACTCTAAACGACGATTCGATTAGAAATGTTTCAAACTCCCAGTCGAGAGTTTATAGTTTATGGTTTGGTCTGTGTGGTGAGGGTAGCATATTTATCAGCCAACTTTCTGAAAACTTCATAAAATTGTTTCGAGAACTCAACTAAGCTCAAAAGTATCTGCTTCACGTTGAAGCTAAGTTTTAATAAGCTATTATAAGTTTTAAAAATGGCTAGCGGCTCAAGGAGTTTCTGATGCTCTTAGATTTTTCCCTAAAGAACTGACGGTGTGGTCCACGGCTGCCTAACTACTGCGTGAAAATGTTTTTCTAGTTCCAAAGTTTCAGTAGTTCGATCGAAGGAAAAGCAGACCCCCTCTGCCTTTACACCCGTCTCCCCTCGTGTCACCTTTTATGTTTTTGAGTTGCAACGTTCAAAGTTTGTCTAATTGGGGGACGGCGGGTCGGATGGAAGAGAGATGGAAGAGAGATGGTGTGTGAGCGGCACGGTGGGATACTGTAGAGTGAATCATCACTCTAGATGGACTCCCCAGAATGCACTTTGAACCCCTAGAACATAGTTTGAATTCAAATAATGATAGGACTTCCTCCGTTTTTGAGTATAGTTCTAGAAACCGTAAACCTTGAAAAAATCGGCAAATCTTGACTTAGGCATAA</canonical>
            <polymorphic>GGTGTGTGAGCAGCACCGGTGGGTACTGTAGGTAGGGAAGAACTAGTCACGAGCAGAGAAAGAAAAAGATTCCCATTTGGATCGATGGAAAGACAGTCCTTCTCTGCTCTTCCACCCGTCTCCTTTCGTGCCACCCAGTATGTTTCTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGAAGGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCAGCACGGGTGGGTACTGTAGAGTGAATCAACACTCTAGATGGACACCCTAGACGGAACTTTGAACATCCTAGAATATAGTTTGAATATGAAAATAGATATTTGAAAACTCTAAACGACGATTCGATTAGAAATGTTTCAAACTCCCAGTCGAGAGTTTATAGTTTATGGTTTGGTCTGTGTGGTGAGGGTAGCATATTTATCAGCCAACTTTCTGAAAACTTCATAAAATTGTTTCGAGAACTCAACTAAGCTCAAAARTATCTGCTTCACGTTGAAGCTAAGTTTTAATAAGCTATTATAAGTTTTAAAAATGGCTAGCGGCTCAAGGAGTTTCTGATGCTCTTAGATTTTTCCCTAAAGAACTGACGGTGTGGTCCACGGCTGCCTAACTACTGCGTGAAAATGTTTTTCTAGTTCCAAAGTTTCAGTAGTTCGATCGAAGGAAAAGCAGACCCCCTCTGCCTTTACACCCGTCTCCCCTCGTGTCACCTTTTATGTTTTTGAGTTGCAACGTTCAAAGTTTGTCTAATTGGGGGACGGCGGGTCGGATGGAAGAGAGATGGAAGAGAGATGGTGTGTGAGCGGCACGGTGGGATACTGTAGAGTGAATCATCACTCTAGATGGACTCCCCAGAATGCACTTTGAACCCCTAGAACATAGTTTGAATTCAAATAATGATAGGACTTCCTCCGTTTTTGAGTATAGTTCTAGAAACCGTAAACCTTGAAAAAATCGGCAAATCTTGACTTAGGCATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGCATATTTATCAGCCAACTTT</pcr_primer_p1>
		<pcr_primer_p2>CGAACTACTGAAACTTTGGAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TAGCATATTTATCAGCCAACTTTCTGAAAACTTCATAAAATTGTTTCGAGAACTCAACTAAGCTCAAAAGTATCTGCTTCACGTTGAAGCTAAGTTTTAATAAGCTATTATAAGTTTTAAAAATGGCTAGCGGCTCAAGGAGTTTCTGATGCTCTTAGATTTTTCCCTAAAGAACTGACGGTGTGGTCCACGGCTGCCTAACTACTGCGTGAAAATGTTTTTCTAGTTCCAAAGTTTCAGTAGTTCG</canonical_amplicon>
		<polymorphic_amplicon>TAGCATATTTATCAGCCAACTTTCTGAAAACTTCATAAAATTGTTTCGAGAACTCAACTAAGCTCAAAARTATCTGCTTCACGTTGAAGCTAAGTTTTAATAAGCTATTATAAGTTTTAAAAATGGCTAGCGGCTCAAGGAGTTTCTGATGCTCTTAGATTTTTCCCTAAAGAACTGACGGTGTGGTCCACGGCTGCCTAACTACTGCGTGAAAATGTTTTTCTAGTTCCAAAGTTTCAGTAGTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37951</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1138356</contig_pos>
        <strand>+</strand>
        <context>TAAAATAGTT[C/T]GAATATAATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAAAATAGTT</left_flank>
        <right_flank>GAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTCTAGATGGACTCCCCAGAATGCACTTTGAACCCCTAGAACATAGTTTGAATTCAAATAATGATAGGACTTCCTCCGTTTTTGAGTATAGTTCTAGAAACCGTAAACCTTGAAAAAATCGGCAAATCTTGACTTAGGCATAATTTTTCTAGTCGCCCCCGCCCCCTTTTTGTCTTGCCTCCCTTTTTTCTCATGCCCCTCAAATTTGGCTTGGGCCCCCTTTTTTGAGGGGAGAGTAAAATTTGTAAAGAGCAGAAATAAGTGGGATTCCCATTTCGTTCGATGGAAAAACAGTCCTTCTCTGCTCTCGCACCCGTCTCCCCTTGTGCCACCCAGTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGACTGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCGACACGGGTGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAAAATAGTTTGAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGAGAAGACATCGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTTGGACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTCATTTTGGAAGTTTCTGGGTTTTTGTAAATGAACTTTTTTGAGAAGTAAGTTATATTACATGTGAGCAAGAATGGATTTTCAACACCGTAGCTTAATTATGAAGGAACTTCTAATCCAAACAAGATGTGTAATAAATTCCACGACTCACTCCTAGTAAAAATTCCCAGTTTTTGCACCCTTTCAATTCCAAATGTCATCTCATTTCTTGTATTACCAATTCTTACTGTAATGGTGGGAATCATTCCCAATTTAAAAAGCAGTAGCCCTGGTGAACGTGTCAACATACC</canonical>
            <polymorphic>CACTCTAGATGGACTCCCCAGAATGCACTTTGAACCCCTAGAACATAGTTTGAATTCAAATAATGATAGGACTTCCTCCGTTTTTGAGTATAGTTCTAGAAACCGTAAACCTTGAAAAAATCGGCAAATCTTGACTTAGGCATAATTTTTCTAGTCGCCCCCGCCCCCTTTTTGTCTTGCCTCCCTTTTTTCTCATGCCCCTCAAATTTGGCTTGGGCCCCCTTTTTTGAGGGGAGAGTAAAATTTGTAAAGAGCAGAAATAAGTGGGATTCCCATTTCGTTCGATGGAAAAACAGTCCTTCTCTGCTCTCGCACCCGTCTCCCCTTGTGCCACCCAGTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGACTGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCGACACGGGTGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAAAATAGTTYGAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGAGAAGACATCGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTTGGACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTCATTTTGGAAGTTTCTGGGTTTTTGTAAATGAACTTTTTTGAGAAGTAAGTTATATTACATGTGAGCAAGAATGGATTTTCAACACCGTAGCTTAATTATGAAGGAACTTCTAATCCAAACAAGATGTGTAATAAATTCCACGACTCACTCCTAGTAAAAATTCCCAGTTTTTGCACCCTTTCAATTCCAAATGTCATCTCATTTCTTGTATTACCAATTCTTACTGTAATGGTGGGAATCATTCCCAATTTAAAAAGCAGTAGCCCTGGTGAACGTGTCAACATACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGGGTACTGTAGAGTGAATC</pcr_primer_p1>
		<pcr_primer_p2>GACCAAATCAATAACCTCTGTC</pcr_primer_p2>
		<pcr_amplicon_size>191</pcr_amplicon_size>
		<canonical_amplicon>GGTGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAAAATAGTTTGAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGAGAAGACATCGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTTGGACAGAGGTTATTGATTTGGTC</canonical_amplicon>
		<polymorphic_amplicon>GGTGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAAAATAGTTYGAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGAGAAGACATCGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTTGGACAGAGGTTATTGATTTGGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37952</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1138426</contig_pos>
        <strand>+</strand>
        <context>grgaagacat[C/T]gaaaatctgc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGAGAAGACAT</left_flank>
        <right_flank>GAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTTGGACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTCCTCCGTTTTTGAGTATAGTTCTAGAAACCGTAAACCTTGAAAAAATCGGCAAATCTTGACTTAGGCATAATTTTTCTAGTCGCCCCCGCCCCCTTTTTGTCTTGCCTCCCTTTTTTCTCATGCCCCTCAAATTTGGCTTGGGCCCCCTTTTTTGAGGGGAGAGTAAAATTTGTAAAGAGCAGAAATAAGTGGGATTCCCATTTCGTTCGATGGAAAAACAGTCCTTCTCTGCTCTCGCACCCGTCTCCCCTTGTGCCACCCAGTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGACTGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCGACACGGGTGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAAAATAGTTTGAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGAGAAGACATCGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTTGGACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTCATTTTGGAAGTTTCTGGGTTTTTGTAAATGAACTTTTTTGAGAAGTAAGTTATATTACATGTGAGCAAGAATGGATTTTCAACACCGTAGCTTAATTATGAAGGAACTTCTAATCCAAACAAGATGTGTAATAAATTCCACGACTCACTCCTAGTAAAAATTCCCAGTTTTTGCACCCTTTCAATTCCAAATGTCATCTCATTTCTTGTATTACCAATTCTTACTGTAATGGTGGGAATCATTCCCAATTTAAAAAGCAGTAGCCCTGGTGAACGTGTCAACATACCTTTAAGGTTTATGTGTTCGTCTGTCTGTTTTGGACTTTTTTTGAGTACCTATGTCAGATGGGTGTCGGAT</canonical>
            <polymorphic>ACTTCCTCCGTTTTTGAGTATAGTTCTAGAAACCGTAAACCTTGAAAAAATCGGCAAATCTTGACTTAGGCATAATTTTTCTAGTCGCCCCCGCCCCCTTTTTGTCTTGCCTCCCTTTTTTCTCATGCCCCTCAAATTTGGCTTGGGCCCCCTTTTTTGAGGGGAGAGTAAAATTTGTAAAGAGCAGAAATAAGTGGGATTCCCATTTCGTTCGATGGAAAAACAGTCCTTCTCTGCTCTCGCACCCGTCTCCCCTTGTGCCACCCAGTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGACTGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCGACACGGGTGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAAAATAGTTTGAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGAGAAGACATYGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTTGGACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTCATTTTGGAAGTTTCTGGGTTTTTGTAAATGAACTTTTTTGAGAAGTAAGTTATATTACATGTGAGCAAGAATGGATTTTCAACACCGTAGCTTAATTATGAAGGAACTTCTAATCCAAACAAGATGTGTAATAAATTCCACGACTCACTCCTAGTAAAAATTCCCAGTTTTTGCACCCTTTCAATTCCAAATGTCATCTCATTTCTTGTATTACCAATTCTTACTGTAATGGTGGGAATCATTCCCAATTTAAAAAGCAGTAGCCCTGGTGAACGTGTCAACATACCTTTAAGGTTTATGTGTTCGTCTGTCTGTTTTGGACTTTTTTTGAGTACCTATGTCAGATGGGTGTCGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>479 213 208 65 21 14</canonical_bands>
                <polymorphic_bands>479 229 213 65 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGATGGGCACCCTAAAATAG</pcr_primer_p1>
		<pcr_primer_p2>AAACTTCCAAAATGAGCAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGATGGGCACCCTAAAATAGTTTGAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGAGAAGACATCGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTTGGACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTCATTTTGGAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>TAGATGGGCACCCTAAAATAGTTTGAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGAGAAGACATYGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTTGGACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTCATTTTGGAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37953</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1138549</contig_pos>
        <strand>+</strand>
        <context>AAACAGATAG[C/G]ACACGTTTYG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAG</left_flank>
        <right_flank>ACACGTTTTGTTAACTGCTCATTTTGGAAGTTTCTGGGTTTTTGTAAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGCCCCTCAAATTTGGCTTGGGCCCCCTTTTTTGAGGGGAGAGTAAAATTTGTAAAGAGCAGAAATAAGTGGGATTCCCATTTCGTTCGATGGAAAAACAGTCCTTCTCTGCTCTCGCACCCGTCTCCCCTTGTGCCACCCAGTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGACTGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCGACACGGGTGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAAAATAGTTTGAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGAGAAGACATCGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTTGGACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTCATTTTGGAAGTTTCTGGGTTTTTGTAAATGAACTTTTTTGAGAAGTAAGTTATATTACATGTGAGCAAGAATGGATTTTCAACACCGTAGCTTAATTATGAAGGAACTTCTAATCCAAACAAGATGTGTAATAAATTCCACGACTCACTCCTAGTAAAAATTCCCAGTTTTTGCACCCTTTCAATTCCAAATGTCATCTCATTTCTTGTATTACCAATTCTTACTGTAATGGTGGGAATCATTCCCAATTTAAAAAGCAGTAGCCCTGGTGAACGTGTCAACATACCTTTAAGGTTTATGTGTTCGTCTGTCTGTTTTGGACTTTTTTTGAGTACCTATGTCAGATGGGTGTCGGATGGCGGTGCGTAAGAAAACTGTCGGAAACAGGGTTGCTCTTTCTTTTGTTAAAGACATTCTGGGATGAGTATGATTTGACGACCTAGCGGCTCGATAAGCTTTTGGGTGGCTCCAAAAGAACGG</canonical>
            <polymorphic>CATGCCCCTCAAATTTGGCTTGGGCCCCCTTTTTTGAGGGGAGAGTAAAATTTGTAAAGAGCAGAAATAAGTGGGATTCCCATTTCGTTCGATGGAAAAACAGTCCTTCTCTGCTCTCGCACCCGTCTCCCCTTGTGCCACCCAGTATGTTTTTCGAATTGCGCCGTTCGAAGTTTGTCTAATTGGGAGACGACGAGGGGAACGACGGGGGGACTGTGGGACGGATGGAGGAGAGATGGGGTGTGAGCGACACGGGTGGGTACTGTAGAGTGAATCATCACCCTAGATGGGCACCCTAAAATAGTTTGAATATAATGCATCCTATAATGATAGAACACCCCGGTTTTGAGCATAACTTAAGAATGAGAGAAGACATCGAAAATCTGCAAACGCCATTCGATTTGAAATTCAAAAATACATTTGGACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGSACACGTTTTGTTAACTGCTCATTTTGGAAGTTTCTGGGTTTTTGTAAATGAACTTTTTTGAGAAGTAAGTTATATTACATGTGAGCAAGAATGGATTTTCAACACCGTAGCTTAATTATGAAGGAACTTCTAATCCAAACAAGATGTGTAATAAATTCCACGACTCACTCCTAGTAAAAATTCCCAGTTTTTGCACCCTTTCAATTCCAAATGTCATCTCATTTCTTGTATTACCAATTCTTACTGTAATGGTGGGAATCATTCCCAATTTAAAAAGCAGTAGCCCTGGTGAACGTGTCAACATACCTTTAAGGTTTATGTGTTCGTCTGTCTGTTTTGGACTTTTTTTGAGTACCTATGTCAGATGGGTGTCGGATGGCGGTGCGTAAGAAAACTGTCGGAAACAGGGTTGCTCTTTCTTTTGTTAAAGACATTCTGGGATGAGTATGATTTGACGACCTAGCGGCTCGATAAGCTTTTGGGTGGCTCCAAAAGAACGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>164 101 80 78 73 59 49 48 44 44 37 28 25 25 21 16 15 14 13 13 12 8 7 7 6 6 3 2 2</canonical_bands>
                <polymorphic_bands>166 101 80 78 73 59 49 48 44 44 37 28 25 25 21 16 15 14 13 13 12 8 7 7 6 6 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACAGAGGTTATTGATTTGGTC</pcr_primer_p1>
		<pcr_primer_p2>GTCGTGGAATTTATTACACATCT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>GACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGCACACGTTTTGTTAACTGCTCATTTTGGAAGTTTCTGGGTTTTTGTAAATGAACTTTTTTGAGAAGTAAGTTATATTACATGTGAGCAAGAATGGATTTTCAACACCGTAGCTTAATTATGAAGGAACTTCTAATCCAAACAAGATGTGTAATAAATTCCACGAC</canonical_amplicon>
		<polymorphic_amplicon>GACAGAGGTTATTGATTTGGTCCGGCAATCAGATGAACTGAAAAATAAGGGAACTTTGACCGTCAAAAACAGATAGSACACGTTTTGTTAACTGCTCATTTTGGAAGTTTCTGGGTTTTTGTAAATGAACTTTTTTGAGAAGTAAGTTATATTACATGTGAGCAAGAATGGATTTTCAACACCGTAGCTTAATTATGAAGGAACTTCTAATCCAAACAAGATGTGTAATAAATTCCACGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37954</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1160976</contig_pos>
        <strand></strand>
        <context>TAGGTTGGGG[A/G]GACGTGGTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGAGGACTGAACATAAAAAACTGAATTAGTAATGAGCTTAGGTTGGGG</left_flank>
        <right_flank>GACGTGGTTGGGTACTTGCATTTCTACCACCAGGAGCCGAGATTTAGCAG</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCGAAATGCAGTGAAAGTTTTGGGAAAGAAGAGAGAATTCGGAAAGAAAAGTACTTTGGAGACGAACAAGCAGAGAAATCCGCAATGACAGTTATAGAAAAAGGAAATCAAGAAAATCGGAAAAAGATAGAGGGAAAGGGAAAGAGAGAAATGGATAACGACGGATCAATTGTTGAAAAAGTGAAAGATCAAGAGAAAGTGTAGTTGGTTATACGGTACCTAAAGAAAATCACATGTTTTCCTACTCTCAATGTACTTTCCACAACCTTCTCTCGTCCAAAACCAAAAAGTACAATAATTTTGCTATTGAAACAACTGAAACAAACACCCCGCATTATTATTTCAAACTCACTATGTTTGCCCAAACTGATAACATAGCCCCTTTGAATTGTTTCTGGCAATCTGCCAGTGTTTCGAATGATAACTAAAAATTGATAGAACTGTTAAAAAGAGGACTGAACATAAAAAACTGAATTAGTAATGAGCTTAGGTTGGGGAGACGTGGTTGGGTACTTGCATTTCTACCACCAGGAGCCGAGATTTAGCAGTTTTGCAGTTAATTTGATTTGGTGTGCCCCAAACCCCCGATTAACTTTGATCAATTTGGCTTAATCAAGTCGTGTCAATTTTTTGTCACAATATTAAGAGAATAGAAGTTTCAAAAGGGTATGAAGCAAGGCAAGGAGAGATAAAAAATGAGTGAAAACTCTAAAAAAAACACTGCAGGTTTTCATTTATCGTAAATACTTAATGAAAGCCCACCGTATAAGTTGTCGAGGCAGCAGAGGTTCTACTGCACGAAATCAAATCCAACAGAATGTATTAGAACACATCTAGAATGTCACAAATTATTTAACGTTACATATTTGCCGTGAACAGTTCCCATATCAACATATCAGATCTGGAGCATAAACGTGGATATGCCGAGGAAAGAATGAGAATCACCAGTATGGTGAGACATCTGAGACTTCCACCAAAGGAACAACACTGGACTTAAT</canonical>
            <polymorphic>AAGCGAAATGCAGTGAAAGTTTTGGGAAAGAAGAGAGAATTCGGAAAGAAAAGTACTTTGGAGACGAACAAGCAGAGAAATCCGCAATGACAGTTATAGAAAAAGGAAATCAAGAAAATCGGAAAAAGATAGAGGGAAAGGGAAAGAGAGAAATGGATAACGACGGATCAATTGTTGAAAAAGTGAAAGATCAAGAGAAAGTGTAGTTGGTTATACGGTACCTAAAGAAAATCACATGTTTTCCTACTCTCAATGTACTTTCCACAACCTTCTCTCGTCCAAAACCAAAAAGTACAATAATTTTGCTATTGAAACAACTGAAACAAACACCCCGCATTATTATTTCAAACTCACTATGTTTGCCCAAACTGATAACATAGCCCCTTTGAATTGTTTCTGGCAATCTGCCAGTGTTTCGAATGATAACTAAAAATTGATAGAACTGTTAAAAAGAGGACTGAACATAAAAAACTGAATTAGTAATGAGCTTAGGTTGGGGRGACGTGGTTGGGTACTTGCATTTCTACCACCAGGAGCCGAGATTTAGCAGTTTTGCAGTTAATTTGATTTGGTGTGCCCCAAACCCCCGATTAACTTTGATCAATTTGGCTTAATCAAGTCGTGTCAATTTTTTGTCACAATATTAAGAGAATAGAAGTTTCAAAAGGGTATGAAGCAAGGCAAGGAGAGATAAAAAATGAGTGAAAACTCTAAAAAAAACACTGCAGGTTTTCATTTATCGTAAATACTTAATGAAAGCCCACCGTATAAGTTGTCGAGGCAGCAGAGGTTCTACTGCACGAAATCAAATCCAACAGAATGTATTAGAACACATCTAGAATGTCACAAATTATTTAACGTTACATATTTGCCGTGAACAGTTCCCATATCAACATATCAGATCTGGAGCATAAACGTGGATATGCCGAGGAAAGAATGAGAATCACCAGTATGGTGAGACATCTGAGACTTCCACCAAAGGAACAACACTGGACTTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCATTATTATTTCAAACTCACT</pcr_primer_p1>
		<pcr_primer_p2>CAAATCAAATTAACTGCAAAACT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CGCATTATTATTTCAAACTCACTATGTTTGCCCAAACTGATAACATAGCCCCTTTGAATTGTTTCTGGCAATCTGCCAGTGTTTCGAATGATAACTAAAAATTGATAGAACTGTTAAAAAGAGGACTGAACATAAAAAACTGAATTAGTAATGAGCTTAGGTTGGGGAGACGTGGTTGGGTACTTGCATTTCTACCACCAGGAGCCGAGATTTAGCAGTTTTGCAGTTAATTTGATTTG</canonical_amplicon>
		<polymorphic_amplicon>CGCATTATTATTTCAAACTCACTATGTTTGCCCAAACTGATAACATAGCCCCTTTGAATTGTTTCTGGCAATCTGCCAGTGTTTCGAATGATAACTAAAAATTGATAGAACTGTTAAAAAGAGGACTGAACATAAAAAACTGAATTAGTAATGAGCTTAGGTTGGGGRGACGTGGTTGGGTACTTGCATTTCTACCACCAGGAGCCGAGATTTAGCAGTTTTGCAGTTAATTTGATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37955</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1161075</contig_pos>
        <strand>+</strand>
        <context>GATTAACTTT[A/G]ATCAATTTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTTTGCAGTTAATTTGATTTGGTGTGCCCCAAACCCCCGATTAACTTT</left_flank>
        <right_flank>ATCAATTTGGCTTAATCAAGTCGTGTCAATTTTTTGTCACAATATTAAGA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAGGAAATCAAGAAAATCGGAAAAAGATAGAGGGAAAGGGAAAGAGAGAAATGGATAACGACGGATCAATTGTTGAAAAAGTGAAAGATCAAGAGAAAGTGTAGTTGGTTATACGGTACCTAAAGAAAATCACATGTTTTCCTACTCTCAATGTACTTTCCACAACCTTCTCTCGTCCAAAACCAAAAAGTACAATAATTTTGCTATTGAAACAACTGAAACAAACACCCCGCATTATTATTTCAAACTCACTATGTTTGCCCAAACTGATAACATAGCCCCTTTGAATTGTTTCTGGCAATCTGCCAGTGTTTCGAATGATAACTAAAAATTGATAGAACTGTTAAAAAGAGGACTGAACATAAAAAACTGAATTAGTAATGAGCTTAGGTTGGGGAGACGTGGTTGGGTACTTGCATTTCTACCACCAGGAGCCGAGATTTAGCAGTTTTGCAGTTAATTTGATTTGGTGTGCCCCAAACCCCCGATTAACTTTGATCAATTTGGCTTAATCAAGTCGTGTCAATTTTTTGTCACAATATTAAGAGAATAGAAGTTTCAAAAGGGTATGAAGCAAGGCAAGGAGAGATAAAAAATGAGTGAAAACTCTAAAAAAAACACTGCAGGTTTTCATTTATCGTAAATACTTAATGAAAGCCCACCGTATAAGTTGTCGAGGCAGCAGAGGTTCTACTGCACGAAATCAAATCCAACAGAATGTATTAGAACACATCTAGAATGTCACAAATTATTTAACGTTACATATTTGCCGTGAACAGTTCCCATATCAACATATCAGATCTGGAGCATAAACGTGGATATGCCGAGGAAAGAATGAGAATCACCAGTATGGTGAGACATCTGAGACTTCCACCAAAGGAACAACACTGGACTTAATGATGCCGGATCTCAACTGTTGATGTCACTTCTTCTACAGTCACAACCTCCTACACGCCCGAGAAGATCCGGAATCAAAGCCCTAATCCCAGTAATAAAT</canonical>
            <polymorphic>AAAAAGGAAATCAAGAAAATCGGAAAAAGATAGAGGGAAAGGGAAAGAGAGAAATGGATAACGACGGATCAATTGTTGAAAAAGTGAAAGATCAAGAGAAAGTGTAGTTGGTTATACGGTACCTAAAGAAAATCACATGTTTTCCTACTCTCAATGTACTTTCCACAACCTTCTCTCGTCCAAAACCAAAAAGTACAATAATTTTGCTATTGAAACAACTGAAACAAACACCCCGCATTATTATTTCAAACTCACTATGTTTGCCCAAACTGATAACATAGCCCCTTTGAATTGTTTCTGGCAATCTGCCAGTGTTTCGAATGATAACTAAAAATTGATAGAACTGTTAAAAAGAGGACTGAACATAAAAAACTGAATTAGTAATGAGCTTAGGTTGGGGAGACGTGGTTGGGTACTTGCATTTCTACCACCAGGAGCCGAGATTTAGCAGTTTTGCAGTTAATTTGATTTGGTGTGCCCCAAACCCCCGATTAACTTTRATCAATTTGGCTTAATCAAGTCGTGTCAATTTTTTGTCACAATATTAAGAGAATAGAAGTTTCAAAAGGGTATGAAGCAAGGCAAGGAGAGATAAAAAATGAGTGAAAACTCTAAAAAAAACACTGCAGGTTTTCATTTATCGTAAATACTTAATGAAAGCCCACCGTATAAGTTGTCGAGGCAGCAGAGGTTCTACTGCACGAAATCAAATCCAACAGAATGTATTAGAACACATCTAGAATGTCACAAATTATTTAACGTTACATATTTGCCGTGAACAGTTCCCATATCAACATATCAGATCTGGAGCATAAACGTGGATATGCCGAGGAAAGAATGAGAATCACCAGTATGGTGAGACATCTGAGACTTCCACCAAAGGAACAACACTGGACTTAATGATGCCGGATCTCAACTGTTGATGTCACTTCTTCTACAGTCACAACCTCCTACACGCCCGAGAAGATCCGGAATCAAAGCCCTAATCCCAGTAATAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>410 302 107 66 57 35 23</canonical_bands>
                <polymorphic_bands>712 107 66 57 35 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACTTGCATTTCTACCACCAG</pcr_primer_p1>
		<pcr_primer_p2>GGGCTTTCATTAAGTATTTACG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACTTGCATTTCTACCACCAGGAGCCGAGATTTAGCAGTTTTGCAGTTAATTTGATTTGGTGTGCCCCAAACCCCCGATTAACTTTGATCAATTTGGCTTAATCAAGTCGTGTCAATTTTTTGTCACAATATTAAGAGAATAGAAGTTTCAAAAGGGTATGAAGCAAGGCAAGGAGAGATAAAAAATGAGTGAAAACTCTAAAAAAAACACTGCAGGTTTTCATTTATCGTAAATACTTAATGAAAGCCC</canonical_amplicon>
		<polymorphic_amplicon>TACTTGCATTTCTACCACCAGGAGCCGAGATTTAGCAGTTTTGCAGTTAATTTGATTTGGTGTGCCCCAAACCCCCGATTAACTTTRATCAATTTGGCTTAATCAAGTCGTGTCAATTTTTTGTCACAATATTAAGAGAATAGAAGTTTCAAAAGGGTATGAAGCAAGGCAAGGAGAGATAAAAAATGAGTGAAAACTCTAAAAAAAACACTGCAGGTTTTCATTTATCGTAAATACTTAATGAAAGCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37956</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1161169</contig_pos>
        <strand>+</strand>
        <context>AAGGAGAGAT[C/T]AAAAATGAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTAAGAGAATAGAAGTTTCAAAAGGGTATGAAGCAAGGCAAGGAGAGAT</left_flank>
        <right_flank>AAAAATGAGTGAAAACTCTAAAAAAAACACTGCAGGTTTTCATTTATCGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGAAAGTGTAGTTGGTTATACGGTACCTAAAGAAAATCACATGTTTTCCTACTCTCAATGTACTTTCCACAACCTTCTCTCGTCCAAAACCAAAAAGTACAATAATTTTGCTATTGAAACAACTGAAACAAACACCCCGCATTATTATTTCAAACTCACTATGTTTGCCCAAACTGATAACATAGCCCCTTTGAATTGTTTCTGGCAATCTGCCAGTGTTTCGAATGATAACTAAAAATTGATAGAACTGTTAAAAAGAGGACTGAACATAAAAAACTGAATTAGTAATGAGCTTAGGTTGGGGAGACGTGGTTGGGTACTTGCATTTCTACCACCAGGAGCCGAGATTTAGCAGTTTTGCAGTTAATTTGATTTGGTGTGCCCCAAACCCCCGATTAACTTTGATCAATTTGGCTTAATCAAGTCGTGTCAATTTTTTGTCACAATATTAAGAGAATAGAAGTTTCAAAAGGGTATGAAGCAAGGCAAGGAGAGATAAAAAATGAGTGAAAACTCTAAAAAAAACACTGCAGGTTTTCATTTATCGTAAATACTTAATGAAAGCCCACCGTATAAGTTGTCGAGGCAGCAGAGGTTCTACTGCACGAAATCAAATCCAACAGAATGTATTAGAACACATCTAGAATGTCACAAATTATTTAACGTTACATATTTGCCGTGAACAGTTCCCATATCAACATATCAGATCTGGAGCATAAACGTGGATATGCCGAGGAAAGAATGAGAATCACCAGTATGGTGAGACATCTGAGACTTCCACCAAAGGAACAACACTGGACTTAATGATGCCGGATCTCAACTGTTGATGTCACTTCTTCTACAGTCACAACCTCCTACACGCCCGAGAAGATCCGGAATCAAAGCCCTAATCCCAGTAATAAATAGTTGTTGAATTAACTAATGTCCTATCCTTGTACTTCTGTCTCCGGCACAGGGCTCACCACCTAATGTGTCGGAACATAAGCCCACTTTGCACT</canonical>
            <polymorphic>AGAGAAAGTGTAGTTGGTTATACGGTACCTAAAGAAAATCACATGTTTTCCTACTCTCAATGTACTTTCCACAACCTTCTCTCGTCCAAAACCAAAAAGTACAATAATTTTGCTATTGAAACAACTGAAACAAACACCCCGCATTATTATTTCAAACTCACTATGTTTGCCCAAACTGATAACATAGCCCCTTTGAATTGTTTCTGGCAATCTGCCAGTGTTTCGAATGATAACTAAAAATTGATAGAACTGTTAAAAAGAGGACTGAACATAAAAAACTGAATTAGTAATGAGCTTAGGTTGGGGAGACGTGGTTGGGTACTTGCATTTCTACCACCAGGAGCCGAGATTTAGCAGTTTTGCAGTTAATTTGATTTGGTGTGCCCCAAACCCCCGATTAACTTTGATCAATTTGGCTTAATCAAGTCGTGTCAATTTTTTGTCACAATATTAAGAGAATAGAAGTTTCAAAAGGGTATGAAGCAAGGCAAGGAGAGATYAAAAATGAGTGAAAACTCTAAAAAAAACACTGCAGGTTTTCATTTATCGTAAATACTTAATGAAAGCCCACCGTATAAGTTGTCGAGGCAGCAGAGGTTCTACTGCACGAAATCAAATCCAACAGAATGTATTAGAACACATCTAGAATGTCACAAATTATTTAACGTTACATATTTGCCGTGAACAGTTCCCATATCAACATATCAGATCTGGAGCATAAACGTGGATATGCCGAGGAAAGAATGAGAATCACCAGTATGGTGAGACATCTGAGACTTCCACCAAAGGAACAACACTGGACTTAATGATGCCGGATCTCAACTGTTGATGTCACTTCTTCTACAGTCACAACCTCCTACACGCCCGAGAAGATCCGGAATCAAAGCCCTAATCCCAGTAATAAATAGTTGTTGAATTAACTAATGTCCTATCCTTGTACTTCTGTCTCCGGCACAGGGCTCACCACCTAATGTGTCGGAACATAAGCCCACTTTGCACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTTGCATTTCTACCACCAG</pcr_primer_p1>
		<pcr_primer_p2>GGGCTTTCATTAAGTATTTACG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACTTGCATTTCTACCACCAGGAGCCGAGATTTAGCAGTTTTGCAGTTAATTTGATTTGGTGTGCCCCAAACCCCCGATTAACTTTGATCAATTTGGCTTAATCAAGTCGTGTCAATTTTTTGTCACAATATTAAGAGAATAGAAGTTTCAAAAGGGTATGAAGCAAGGCAAGGAGAGATAAAAAATGAGTGAAAACTCTAAAAAAAACACTGCAGGTTTTCATTTATCGTAAATACTTAATGAAAGCCC</canonical_amplicon>
		<polymorphic_amplicon>TACTTGCATTTCTACCACCAGGAGCCGAGATTTAGCAGTTTTGCAGTTAATTTGATTTGGTGTGCCCCAAACCCCCGATTAACTTTGATCAATTTGGCTTAATCAAGTCGTGTCAATTTTTTGTCACAATATTAAGAGAATAGAAGTTTCAAAAGGGTATGAAGCAAGGCAAGGAGAGATYAAAAATGAGTGAAAACTCTAAAAAAAACACTGCAGGTTTTCATTTATCGTAAATACTTAATGAAAGCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37957</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1161199</contig_pos>
        <strand></strand>
        <context>AAAAAAAACA[C/T]TGCAGGTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAGCAAGGCAAGGAGAGATAAAAAATGAGTGAAAACTCTAAAAAAAACA</left_flank>
        <right_flank>TGCAGGTTTTCATTTATCGTAAATACTTAATGAAAGCCCACCGTATAAGT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGAAAATCACATGTTTTCCTACTCTCAATGTACTTTCCACAACCTTCTCTCGTCCAAAACCAAAAAGTACAATAATTTTGCTATTGAAACAACTGAAACAAACACCCCGCATTATTATTTCAAACTCACTATGTTTGCCCAAACTGATAACATAGCCCCTTTGAATTGTTTCTGGCAATCTGCCAGTGTTTCGAATGATAACTAAAAATTGATAGAACTGTTAAAAAGAGGACTGAACATAAAAAACTGAATTAGTAATGAGCTTAGGTTGGGGAGACGTGGTTGGGTACTTGCATTTCTACCACCAGGAGCCGAGATTTAGCAGTTTTGCAGTTAATTTGATTTGGTGTGCCCCAAACCCCCGATTAACTTTGATCAATTTGGCTTAATCAAGTCGTGTCAATTTTTTGTCACAATATTAAGAGAATAGAAGTTTCAAAAGGGTATGAAGCAAGGCAAGGAGAGATAAAAAATGAGTGAAAACTCTAAAAAAAACACTGCAGGTTTTCATTTATCGTAAATACTTAATGAAAGCCCACCGTATAAGTTGTCGAGGCAGCAGAGGTTCTACTGCACGAAATCAAATCCAACAGAATGTATTAGAACACATCTAGAATGTCACAAATTATTTAACGTTACATATTTGCCGTGAACAGTTCCCATATCAACATATCAGATCTGGAGCATAAACGTGGATATGCCGAGGAAAGAATGAGAATCACCAGTATGGTGAGACATCTGAGACTTCCACCAAAGGAACAACACTGGACTTAATGATGCCGGATCTCAACTGTTGATGTCACTTCTTCTACAGTCACAACCTCCTACACGCCCGAGAAGATCCGGAATCAAAGCCCTAATCCCAGTAATAAATAGTTGTTGAATTAACTAATGTCCTATCCTTGTACTTCTGTCTCCGGCACAGGGCTCACCACCTAATGTGTCGGAACATAAGCCCACTTTGCACTCAATTATCTCGGTTCCTATGAAAGATAGGA</canonical>
            <polymorphic>AAAGAAAATCACATGTTTTCCTACTCTCAATGTACTTTCCACAACCTTCTCTCGTCCAAAACCAAAAAGTACAATAATTTTGCTATTGAAACAACTGAAACAAACACCCCGCATTATTATTTCAAACTCACTATGTTTGCCCAAACTGATAACATAGCCCCTTTGAATTGTTTCTGGCAATCTGCCAGTGTTTCGAATGATAACTAAAAATTGATAGAACTGTTAAAAAGAGGACTGAACATAAAAAACTGAATTAGTAATGAGCTTAGGTTGGGGAGACGTGGTTGGGTACTTGCATTTCTACCACCAGGAGCCGAGATTTAGCAGTTTTGCAGTTAATTTGATTTGGTGTGCCCCAAACCCCCGATTAACTTTGATCAATTTGGCTTAATCAAGTCGTGTCAATTTTTTGTCACAATATTAAGAGAATAGAAGTTTCAAAAGGGTATGAAGCAAGGCAAGGAGAGATAAAAAATGAGTGAAAACTCTAAAAAAAACAYTGCAGGTTTTCATTTATCGTAAATACTTAATGAAAGCCCACCGTATAAGTTGTCGAGGCAGCAGAGGTTCTACTGCACGAAATCAAATCCAACAGAATGTATTAGAACACATCTAGAATGTCACAAATTATTTAACGTTACATATTTGCCGTGAACAGTTCCCATATCAACATATCAGATCTGGAGCATAAACGTGGATATGCCGAGGAAAGAATGAGAATCACCAGTATGGTGAGACATCTGAGACTTCCACCAAAGGAACAACACTGGACTTAATGATGCCGGATCTCAACTGTTGATGTCACTTCTTCTACAGTCACAACCTCCTACACGCCCGAGAAGATCCGGAATCAAAGCCCTAATCCCAGTAATAAATAGTTGTTGAATTAACTAATGTCCTATCCTTGTACTTCTGTCTCCGGCACAGGGCTCACCACCTAATGTGTCGGAACATAAGCCCACTTTGCACTCAATTATCTCGGTTCCTATGAAAGATAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 311 189</canonical_bands>
                <polymorphic_bands>811 189</polymorphic_bands>
            </assay>
            <assay>
                <site>CTGCAG</site>
                <isoschizomers>
                    <enzyme>BloHII</enzyme>
                    <enzyme>BstMAI</enzyme>
                    <enzyme>PstI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>93 93 66 65 60 48 45 43 41 38 37 32 32 30 30 27 24 23 18 18 16 15 14 14 14 12 11 11 9 9 7 3 2</canonical_bands>
                <polymorphic_bands>93 93 66 65 60 59 48 45 43 38 37 32 32 30 30 27 24 23 18 16 15 14 14 14 12 11 11 9 9 7 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAAGTTTCAAAAGGGTATGAAG</pcr_primer_p1>
		<pcr_primer_p2>AGGTTGTGACTGTAGAAGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>AGAAGTTTCAAAAGGGTATGAAGCAAGGCAAGGAGAGATAAAAAATGAGTGAAAACTCTAAAAAAAACACTGCAGGTTTTCATTTATCGTAAATACTTAATGAAAGCCCACCGTATAAGTTGTCGAGGCAGCAGAGGTTCTACTGCACGAAATCAAATCCAACAGAATGTATTAGAACACATCTAGAATGTCACAAATTATTTAACGTTACATATTTGCCGTGAACAGTTCCCATATCAACATATCAGATCTGGAGCATAAACGTGGATATGCCGAGGAAAGAATGAGAATCACCAGTATGGTGAGACATCTGAGACTTCCACCAAAGGAACAACACTGGACTTAATGATGCCGGATCTCAACTGTTGATGTCACTTCTTCTACAGTCACAACCT</canonical_amplicon>
		<polymorphic_amplicon>AGAAGTTTCAAAAGGGTATGAAGCAAGGCAAGGAGAGATAAAAAATGAGTGAAAACTCTAAAAAAAACAYTGCAGGTTTTCATTTATCGTAAATACTTAATGAAAGCCCACCGTATAAGTTGTCGAGGCAGCAGAGGTTCTACTGCACGAAATCAAATCCAACAGAATGTATTAGAACACATCTAGAATGTCACAAATTATTTAACGTTACATATTTGCCGTGAACAGTTCCCATATCAACATATCAGATCTGGAGCATAAACGTGGATATGCCGAGGAAAGAATGAGAATCACCAGTATGGTGAGACATCTGAGACTTCCACCAAAGGAACAACACTGGACTTAATGATGCCGGATCTCAACTGTTGATGTCACTTCTTCTACAGTCACAACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37958</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1161294</contig_pos>
        <strand></strand>
        <context>aaatccaaca[G/A]watgtattag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATAAGTTGTCGAGGCAGCAGAGGTTCTACTGCACGAAATCAAATCCAACA</left_flank>
        <right_flank>AATGTATTAGAACACATCTAGAATGTCACAAATTATTTAACGTTACATAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAACAAACACCCCGCATTATTATTTCAAACTCACTATGTTTGCCCAAACTGATAACATAGCCCCTTTGAATTGTTTCTGGCAATCTGCCAGTGTTTCGAATGATAACTAAAAATTGATAGAACTGTTAAAAAGAGGACTGAACATAAAAAACTGAATTAGTAATGAGCTTAGGTTGGGGAGACGTGGTTGGGTACTTGCATTTCTACCACCAGGAGCCGAGATTTAGCAGTTTTGCAGTTAATTTGATTTGGTGTGCCCCAAACCCCCGATTAACTTTGATCAATTTGGCTTAATCAAGTCGTGTCAATTTTTTGTCACAATATTAAGAGAATAGAAGTTTCAAAAGGGTATGAAGCAAGGCAAGGAGAGATAAAAAATGAGTGAAAACTCTAAAAAAAACACTGCAGGTTTTCATTTATCGTAAATACTTAATGAAAGCCCACCGTATAAGTTGTCGAGGCAGCAGAGGTTCTACTGCACGAAATCAAATCCAACAGAATGTATTAGAACACATCTAGAATGTCACAAATTATTTAACGTTACATATTTGCCGTGAACAGTTCCCATATCAACATATCAGATCTGGAGCATAAACGTGGATATGCCGAGGAAAGAATGAGAATCACCAGTATGGTGAGACATCTGAGACTTCCACCAAAGGAACAACACTGGACTTAATGATGCCGGATCTCAACTGTTGATGTCACTTCTTCTACAGTCACAACCTCCTACACGCCCGAGAAGATCCGGAATCAAAGCCCTAATCCCAGTAATAAATAGTTGTTGAATTAACTAATGTCCTATCCTTGTACTTCTGTCTCCGGCACAGGGCTCACCACCTAATGTGTCGGAACATAAGCCCACTTTGCACTCAATTATCTCGGTTCCTATGAAAGATAGGAGAATTTTGACAACTAGTAAAATGTTGGTGATGAAATGATAAATATTTTATAAATTGGCAGGTTTTTATAGCTGGCAAATGGTCCGAGATAATTGA</canonical>
            <polymorphic>TGAAACAAACACCCCGCATTATTATTTCAAACTCACTATGTTTGCCCAAACTGATAACATAGCCCCTTTGAATTGTTTCTGGCAATCTGCCAGTGTTTCGAATGATAACTAAAAATTGATAGAACTGTTAAAAAGAGGACTGAACATAAAAAACTGAATTAGTAATGAGCTTAGGTTGGGGAGACGTGGTTGGGTACTTGCATTTCTACCACCAGGAGCCGAGATTTAGCAGTTTTGCAGTTAATTTGATTTGGTGTGCCCCAAACCCCCGATTAACTTTGATCAATTTGGCTTAATCAAGTCGTGTCAATTTTTTGTCACAATATTAAGAGAATAGAAGTTTCAAAAGGGTATGAAGCAAGGCAAGGAGAGATAAAAAATGAGTGAAAACTCTAAAAAAAACACTGCAGGTTTTCATTTATCGTAAATACTTAATGAAAGCCCACCGTATAAGTTGTCGAGGCAGCAGAGGTTCTACTGCACGAAATCAAATCCAACARAATGTATTAGAACACATCTAGAATGTCACAAATTATTTAACGTTACATATTTGCCGTGAACAGTTCCCATATCAACATATCAGATCTGGAGCATAAACGTGGATATGCCGAGGAAAGAATGAGAATCACCAGTATGGTGAGACATCTGAGACTTCCACCAAAGGAACAACACTGGACTTAATGATGCCGGATCTCAACTGTTGATGTCACTTCTTCTACAGTCACAACCTCCTACACGCCCGAGAAGATCCGGAATCAAAGCCCTAATCCCAGTAATAAATAGTTGTTGAATTAACTAATGTCCTATCCTTGTACTTCTGTCTCCGGCACAGGGCTCACCACCTAATGTGTCGGAACATAAGCCCACTTTGCACTCAATTATCTCGGTTCCTATGAAAGATAGGAGAATTTTGACAACTAGTAAAATGTTGGTGATGAAATGATAAATATTTTATAAATTGGCAGGTTTTTATAGCTGGCAAATGGTCCGAGATAATTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGTTTTCATTTATCGTAAATACT</pcr_primer_p1>
		<pcr_primer_p2>AGGTTGTGACTGTAGAAGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>CAGGTTTTCATTTATCGTAAATACTTAATGAAAGCCCACCGTATAAGTTGTCGAGGCAGCAGAGGTTCTACTGCACGAAATCAAATCCAACAGAATGTATTAGAACACATCTAGAATGTCACAAATTATTTAACGTTACATATTTGCCGTGAACAGTTCCCATATCAACATATCAGATCTGGAGCATAAACGTGGATATGCCGAGGAAAGAATGAGAATCACCAGTATGGTGAGACATCTGAGACTTCCACCAAAGGAACAACACTGGACTTAATGATGCCGGATCTCAACTGTTGATGTCACTTCTTCTACAGTCACAACCT</canonical_amplicon>
		<polymorphic_amplicon>CAGGTTTTCATTTATCGTAAATACTTAATGAAAGCCCACCGTATAAGTTGTCGAGGCAGCAGAGGTTCTACTGCACGAAATCAAATCCAACARAATGTATTAGAACACATCTAGAATGTCACAAATTATTTAACGTTACATATTTGCCGTGAACAGTTCCCATATCAACATATCAGATCTGGAGCATAAACGTGGATATGCCGAGGAAAGAATGAGAATCACCAGTATGGTGAGACATCTGAGACTTCCACCAAAGGAACAACACTGGACTTAATGATGCCGGATCTCAACTGTTGATGTCACTTCTTCTACAGTCACAACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37959</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1161295</contig_pos>
        <strand></strand>
        <context>aatccaacar[A/T]atgtattaga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAGTTGTCGAGGCAGCAGAGGTTCTACTGCACGAAATCAAATCCAACAG</left_flank>
        <right_flank>ATGTATTAGAACACATCTAGAATGTCACAAATTATTTAACGTTACATATT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAACAAACACCCCGCATTATTATTTCAAACTCACTATGTTTGCCCAAACTGATAACATAGCCCCTTTGAATTGTTTCTGGCAATCTGCCAGTGTTTCGAATGATAACTAAAAATTGATAGAACTGTTAAAAAGAGGACTGAACATAAAAAACTGAATTAGTAATGAGCTTAGGTTGGGGAGACGTGGTTGGGTACTTGCATTTCTACCACCAGGAGCCGAGATTTAGCAGTTTTGCAGTTAATTTGATTTGGTGTGCCCCAAACCCCCGATTAACTTTGATCAATTTGGCTTAATCAAGTCGTGTCAATTTTTTGTCACAATATTAAGAGAATAGAAGTTTCAAAAGGGTATGAAGCAAGGCAAGGAGAGATAAAAAATGAGTGAAAACTCTAAAAAAAACACTGCAGGTTTTCATTTATCGTAAATACTTAATGAAAGCCCACCGTATAAGTTGTCGAGGCAGCAGAGGTTCTACTGCACGAAATCAAATCCAACAGAATGTATTAGAACACATCTAGAATGTCACAAATTATTTAACGTTACATATTTGCCGTGAACAGTTCCCATATCAACATATCAGATCTGGAGCATAAACGTGGATATGCCGAGGAAAGAATGAGAATCACCAGTATGGTGAGACATCTGAGACTTCCACCAAAGGAACAACACTGGACTTAATGATGCCGGATCTCAACTGTTGATGTCACTTCTTCTACAGTCACAACCTCCTACACGCCCGAGAAGATCCGGAATCAAAGCCCTAATCCCAGTAATAAATAGTTGTTGAATTAACTAATGTCCTATCCTTGTACTTCTGTCTCCGGCACAGGGCTCACCACCTAATGTGTCGGAACATAAGCCCACTTTGCACTCAATTATCTCGGTTCCTATGAAAGATAGGAGAATTTTGACAACTAGTAAAATGTTGGTGATGAAATGATAAATATTTTATAAATTGGCAGGTTTTTATAGCTGGCAAATGGTCCGAGATAATTGAG</canonical>
            <polymorphic>GAAACAAACACCCCGCATTATTATTTCAAACTCACTATGTTTGCCCAAACTGATAACATAGCCCCTTTGAATTGTTTCTGGCAATCTGCCAGTGTTTCGAATGATAACTAAAAATTGATAGAACTGTTAAAAAGAGGACTGAACATAAAAAACTGAATTAGTAATGAGCTTAGGTTGGGGAGACGTGGTTGGGTACTTGCATTTCTACCACCAGGAGCCGAGATTTAGCAGTTTTGCAGTTAATTTGATTTGGTGTGCCCCAAACCCCCGATTAACTTTGATCAATTTGGCTTAATCAAGTCGTGTCAATTTTTTGTCACAATATTAAGAGAATAGAAGTTTCAAAAGGGTATGAAGCAAGGCAAGGAGAGATAAAAAATGAGTGAAAACTCTAAAAAAAACACTGCAGGTTTTCATTTATCGTAAATACTTAATGAAAGCCCACCGTATAAGTTGTCGAGGCAGCAGAGGTTCTACTGCACGAAATCAAATCCAACAGWATGTATTAGAACACATCTAGAATGTCACAAATTATTTAACGTTACATATTTGCCGTGAACAGTTCCCATATCAACATATCAGATCTGGAGCATAAACGTGGATATGCCGAGGAAAGAATGAGAATCACCAGTATGGTGAGACATCTGAGACTTCCACCAAAGGAACAACACTGGACTTAATGATGCCGGATCTCAACTGTTGATGTCACTTCTTCTACAGTCACAACCTCCTACACGCCCGAGAAGATCCGGAATCAAAGCCCTAATCCCAGTAATAAATAGTTGTTGAATTAACTAATGTCCTATCCTTGTACTTCTGTCTCCGGCACAGGGCTCACCACCTAATGTGTCGGAACATAAGCCCACTTTGCACTCAATTATCTCGGTTCCTATGAAAGATAGGAGAATTTTGACAACTAGTAAAATGTTGGTGATGAAATGATAAATATTTTATAAATTGGCAGGTTTTTATAGCTGGCAAATGGTCCGAGATAATTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGTTTTCATTTATCGTAAATACT</pcr_primer_p1>
		<pcr_primer_p2>AGGTTGTGACTGTAGAAGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>323</pcr_amplicon_size>
		<canonical_amplicon>CAGGTTTTCATTTATCGTAAATACTTAATGAAAGCCCACCGTATAAGTTGTCGAGGCAGCAGAGGTTCTACTGCACGAAATCAAATCCAACAGAATGTATTAGAACACATCTAGAATGTCACAAATTATTTAACGTTACATATTTGCCGTGAACAGTTCCCATATCAACATATCAGATCTGGAGCATAAACGTGGATATGCCGAGGAAAGAATGAGAATCACCAGTATGGTGAGACATCTGAGACTTCCACCAAAGGAACAACACTGGACTTAATGATGCCGGATCTCAACTGTTGATGTCACTTCTTCTACAGTCACAACCT</canonical_amplicon>
		<polymorphic_amplicon>CAGGTTTTCATTTATCGTAAATACTTAATGAAAGCCCACCGTATAAGTTGTCGAGGCAGCAGAGGTTCTACTGCACGAAATCAAATCCAACAGWATGTATTAGAACACATCTAGAATGTCACAAATTATTTAACGTTACATATTTGCCGTGAACAGTTCCCATATCAACATATCAGATCTGGAGCATAAACGTGGATATGCCGAGGAAAGAATGAGAATCACCAGTATGGTGAGACATCTGAGACTTCCACCAAAGGAACAACACTGGACTTAATGATGCCGGATCTCAACTGTTGATGTCACTTCTTCTACAGTCACAACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37960</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1179675</contig_pos>
        <strand>+</strand>
        <context>TGATTGAAAG[A/G]ATTCTAGTCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGATTCCATGAAATTTCAAAATGGATCTCATTTATGTTTGATTGAAAG</left_flank>
        <right_flank>ATTCTAGTCAACTTATATATATCTTTGATTGAATTCATGATTCATTTGTT</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATCAAAGCGCAGGCAACGCTACATCGGTATCAATACTAGAAAATCGAAAGAAAAAACAAAAATAGAACATTTTCAGATCGCTGGCGTCCACCTCTCCAACTCCTTGTACCCAATTTTTGTGAACAAAGATGTTATTGATGGAATGCTGCCCGTTGCCCGATTCTCTGATGTTTTTGTCAGGTGACCAGGTTCTAATTTTTACGTTTTACCAAAACAAAATTCCAGAGAAGACCTCACCACAGCGGTGCGTGATTCAACAACGGTCGATGGTTTTGTAACCAACGCACTGGAGGAACGAATAACAACCATCAAGTCAATCCTATCTCTTGGCGGATCAAACGCCGTCGTGGCAAATATGAAAATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAATTTCAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTTGATTGAATTCATGATTCATTTGTTCTGTTTGGTTATACCATTTACCTATCAATCTTGAGTATCTAACTCTGTGCTAACCGAAACGTGTTCCAACATCATTTATTGTTTTAACATAGTCTCAAGGAGCGTTTTCTCCAGTTGATTTTCTGCCATATTGACCATTTTCAAGTTTCCGATCATTTTGAAAGTTTTGGATATGAAAGAGACCTAGATTATTTTGGGAAATCGGTAGTTTTTCAGCTATTTGTCTTTTTTAGCAAGAAACCTGTACAAAAACTGGTCAAAACCTTTGTCTTTCAAAAAAAAAAGCAAACAGCTGAAAACTAGGAATTTTCAAAAAATGTTGTGAATGGAAAGTTTTCATTCGAGGTCTGTTTTACCCCATTTCAAAACTTTCAAAGTGGTAGGAAACTTGACAGTCGAGCTCCAGACTCTTTTAAATAGACAGAATGACCAAACATCATCTGGAAAATA</canonical>
            <polymorphic>GAATCAAAGCGCAGGCAACGCTACATCGGTATCAATACTAGAAAATCGAAAGAAAAAACAAAAATAGAACATTTTCAGATCGCTGGCGTCCACCTCTCCAACTCCTTGTACCCAATTTTTGTGAACAAAGATGTTATTGATGGAATGCTGCCCGTTGCCCGATTCTCTGATGTTTTTGTCAGGTGACCAGGTTCTAATTTTTACGTTTTACCAAAACAAAATTCCAGAGAAGACCTCACCACAGCGGTGCGTGATTCAACAACGGTCGATGGTTTTGTAACCAACGCACTGGAGGAACGAATAACAACCATCAAGTCAATCCTATCTCTTGGCGGATCAAACGCCGTCGTGGCAAATATGAAAATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAATTTCAAAATGGATCTCATTTATGTTTGATTGAAAGRATTCTAGTCAACTTATATATATCTTTGATTGAATTCATGATTCATTTGTTCTGTTTGGTTATACCATTTACCTATCAATCTTGAGTATCTAACTCTGTGCTAACCGAAACGTGTTCCAACATCATTTATTGTTTTAACATAGTCTCAAGGAGCGTTTTCTCCAGTTGATTTTCTGCCATATTGACCATTTTCAAGTTTCCGATCATTTTGAAAGTTTTGGATATGAAAGAGACCTAGATTATTTTGGGAAATCGGTAGTTTTTCAGCTATTTGTCTTTTTTAGCAAGAAACCTGTACAAAAACTGGTCAAAACCTTTGTCTTTCAAAAAAAAAAGCAAACAGCTGAAAACTAGGAATTTTCAAAAAATGTTGTGAATGGAAAGTTTTCATTCGAGGTCTGTTTTACCCCATTTCAAAACTTTCAAAGTGGTAGGAAACTTGACAGTCGAGCTCCAGACTCTTTTAAATAGACAGAATGACCAAACATCATCTGGAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>323 243 219 146 37 32</canonical_bands>
                <polymorphic_bands>323 243 219 146 69</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>499 469 32</canonical_bands>
                <polymorphic_bands>531 469</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>323 243 146 113 82 37 32 24</canonical_bands>
                <polymorphic_bands>323 243 146 113 82 69 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATCAAGTCAATCCTATCTCTTG</pcr_primer_p1>
		<pcr_primer_p2>TAACCAAACAGAACAAATGAATC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CATCAAGTCAATCCTATCTCTTGGCGGATCAAACGCCGTCGTGGCAAATATGAAAATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAATTTCAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTTGATTGAATTCATGATTCATTTGTTCTGTTTGGTTA</canonical_amplicon>
		<polymorphic_amplicon>CATCAAGTCAATCCTATCTCTTGGCGGATCAAACGCCGTCGTGGCAAATATGAAAATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAATTTCAAAATGGATCTCATTTATGTTTGATTGAAAGRATTCTAGTCAACTTATATATATCTTTGATTGAATTCATGATTCATTTGTTCTGTTTGGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37961</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1179810</contig_pos>
        <strand>+</strand>
        <context>TTTATTGTTT[C/T]AACATAGTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTATCTAACTCTGTGCTAACCGAAACGTGTTCCAACATCATTTATTGTTT</left_flank>
        <right_flank>AACATAGTCTCAAGGAGCGTTTTCTCCAGTTGATTTTCTGCCATATTGAC</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGATGGAATGCTGCCCGTTGCCCGATTCTCTGATGTTTTTGTCAGGTGACCAGGTTCTAATTTTTACGTTTTACCAAAACAAAATTCCAGAGAAGACCTCACCACAGCGGTGCGTGATTCAACAACGGTCGATGGTTTTGTAACCAACGCACTGGAGGAACGAATAACAACCATCAAGTCAATCCTATCTCTTGGCGGATCAAACGCCGTCGTGGCAAATATGAAAATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAATTTCAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTTGATTGAATTCATGATTCATTTGTTCTGTTTGGTTATACCATTTACCTATCAATCTTGAGTATCTAACTCTGTGCTAACCGAAACGTGTTCCAACATCATTTATTGTTTTAACATAGTCTCAAGGAGCGTTTTCTCCAGTTGATTTTCTGCCATATTGACCATTTTCAAGTTTCCGATCATTTTGAAAGTTTTGGATATGAAAGAGACCTAGATTATTTTGGGAAATCGGTAGTTTTTCAGCTATTTGTCTTTTTTAGCAAGAAACCTGTACAAAAACTGGTCAAAACCTTTGTCTTTCAAAAAAAAAAGCAAACAGCTGAAAACTAGGAATTTTCAAAAAATGTTGTGAATGGAAAGTTTTCATTCGAGGTCTGTTTTACCCCATTTCAAAACTTTCAAAGTGGTAGGAAACTTGACAGTCGAGCTCCAGACTCTTTTAAATAGACAGAATGACCAAACATCATCTGGAAAATACGTGAAAAATACAGTACTGTATTAGTTATCCTTGGGTTTGACTAGTGCAGTCAGCAAACTGTCGCTGTTCATTCGACTCTCACTATCGCTGAATTTGGCCAGTAGAATTGAGTAAACGAACACTGTGAGCACACA</canonical>
            <polymorphic>ATTGATGGAATGCTGCCCGTTGCCCGATTCTCTGATGTTTTTGTCAGGTGACCAGGTTCTAATTTTTACGTTTTACCAAAACAAAATTCCAGAGAAGACCTCACCACAGCGGTGCGTGATTCAACAACGGTCGATGGTTTTGTAACCAACGCACTGGAGGAACGAATAACAACCATCAAGTCAATCCTATCTCTTGGCGGATCAAACGCCGTCGTGGCAAATATGAAAATCTCGTGTCCACAGTTTAATGTCTCTAAAGAACATGCTCATATCATCCTACTAGTTAGCGTGGATTTCTATAACATGCCATGACCTTTGATTCCATGAAATTTCAAAATGGATCTCATTTATGTTTGATTGAAAGAATTCTAGTCAACTTATATATATCTTTGATTGAATTCATGATTCATTTGTTCTGTTTGGTTATACCATTTACCTATCAATCTTGAGTATCTAACTCTGTGCTAACCGAAACGTGTTCCAACATCATTTATTGTTTYAACATAGTCTCAAGGAGCGTTTTCTCCAGTTGATTTTCTGCCATATTGACCATTTTCAAGTTTCCGATCATTTTGAAAGTTTTGGATATGAAAGAGACCTAGATTATTTTGGGAAATCGGTAGTTTTTCAGCTATTTGTCTTTTTTAGCAAGAAACCTGTACAAAAACTGGTCAAAACCTTTGTCTTTCAAAAAAAAAAGCAAACAGCTGAAAACTAGGAATTTTCAAAAAATGTTGTGAATGGAAAGTTTTCATTCGAGGTCTGTTTTACCCCATTTCAAAACTTTCAAAGTGGTAGGAAACTTGACAGTCGAGCTCCAGACTCTTTTAAATAGACAGAATGACCAAACATCATCTGGAAAATACGTGAAAAATACAGTACTGTATTAGTTATCCTTGGGTTTGACTAGTGCAGTCAGCAAACTGTCGCTGTTCATTCGACTCTCACTATCGCTGAATTTGGCCAGTAGAATTGAGTAAACGAACACTGTGAGCACACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>329 254 245 172</canonical_bands>
                <polymorphic_bands>583 245 172</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGTATCTAACTCTGTGCTAACC</pcr_primer_p1>
		<pcr_primer_p2>CAAACCCAAGGATAACTAATACA</pcr_primer_p2>
		<pcr_amplicon_size>459</pcr_amplicon_size>
		<canonical_amplicon>TGAGTATCTAACTCTGTGCTAACCGAAACGTGTTCCAACATCATTTATTGTTTTAACATAGTCTCAAGGAGCGTTTTCTCCAGTTGATTTTCTGCCATATTGACCATTTTCAAGTTTCCGATCATTTTGAAAGTTTTGGATATGAAAGAGACCTAGATTATTTTGGGAAATCGGTAGTTTTTCAGCTATTTGTCTTTTTTAGCAAGAAACCTGTACAAAAACTGGTCAAAACCTTTGTCTTTCAAAAAAAAAAGCAAACAGCTGAAAACTAGGAATTTTCAAAAAATGTTGTGAATGGAAAGTTTTCATTCGAGGTCTGTTTTACCCCATTTCAAAACTTTCAAAGTGGTAGGAAACTTGACAGTCGAGCTCCAGACTCTTTTAAATAGACAGAATGACCAAACATCATCTGGAAAATACGTGAAAAATACAGTACTGTATTAGTTATCCTTGGGTTTG</canonical_amplicon>
		<polymorphic_amplicon>TGAGTATCTAACTCTGTGCTAACCGAAACGTGTTCCAACATCATTTATTGTTTYAACATAGTCTCAAGGAGCGTTTTCTCCAGTTGATTTTCTGCCATATTGACCATTTTCAAGTTTCCGATCATTTTGAAAGTTTTGGATATGAAAGAGACCTAGATTATTTTGGGAAATCGGTAGTTTTTCAGCTATTTGTCTTTTTTAGCAAGAAACCTGTACAAAAACTGGTCAAAACCTTTGTCTTTCAAAAAAAAAAGCAAACAGCTGAAAACTAGGAATTTTCAAAAAATGTTGTGAATGGAAAGTTTTCATTCGAGGTCTGTTTTACCCCATTTCAAAACTTTCAAAGTGGTAGGAAACTTGACAGTCGAGCTCCAGACTCTTTTAAATAGACAGAATGACCAAACATCATCTGGAAAATACGTGAAAAATACAGTACTGTATTAGTTATCCTTGGGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37962</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1181319</contig_pos>
        <strand>+</strand>
        <context>ATACTGTCTT[C/T]GATATCAGGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGTTGTCCCATTCCTGCTTCCACTATCGTTCCTCTTCAATACTGTCTT</left_flank>
        <right_flank>GATATCAGGAATCGGCTGATTCATTTGGTCAACTCGGCGCCAAACGCTCA</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAAATAGGTTTTCTTCTGGTAAAATTAGTTAGCAAGAAAATAGAGCTATCCGGAAGGAAAGATACAACACCCACACCAGTGCTCAAACATTTTTAAATTGAGCTGTTTAGGGAGTGTGAGTAATTTGTTCTGAGTAAAAGTTGTTCAAAGTCAGGGAAAAGTCTAGATTCAATAAGGGAAATTGATTATAGGATAGCTAGAAAGAGTGACTAATGTTTTGGAAAAATATAGAGCTTCTTTATACCAGAAAATATATACAATAACAATTTGAATCCTATCCTTCAATCATTTTTTTCTTTTCTTATAATTTCGAAAAAATATTTACATTCCTCTTTCTCTAATTACATATTTACAGAAAATATGAATATTGAGAAAGACGAGGAAGACGTGCCGCCGACGAGATGGGAGAATATTGTAGAATTCATCATGTTCCGCTTCCGATGGCTCTTTGTTGTCCCATTCCTGCTTCCACTATCGTTCCTCTTCAATACTGTCTTCGATATCAGGAATCGGCTGATTCATTTGGTCAACTCGGCGCCAAACGCTCATGTGAGAAAAGTCAACTACATTCAGGAGCAGGTAAATACATTCTCTGGAAAATCAGAAATTATTTAATTTTTATAGCTCAAAGAATGGAATGAGAATGGAAGGAAGACAAAATTGGTAAACGCTCGTCCAGGATGGCTCACAATGAGTTTCAGATTCCCACTGTACAAGGAAAATGCGACGAAAATTGCCACTGATAAGCTTTTTGATATTTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAAATGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAAGTATTTATCATAATATCACCAATATTTTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAAATCGAGTTTGCTTCTATTGAAGGAAATACGGTATGTTAA</canonical>
            <polymorphic>AGGAAATAGGTTTTCTTCTGGTAAAATTAGTTAGCAAGAAAATAGAGCTATCCGGAAGGAAAGATACAACACCCACACCAGTGCTCAAACATTTTTAAATTGAGCTGTTTAGGGAGTGTGAGTAATTTGTTCTGAGTAAAAGTTGTTCAAAGTCAGGGAAAAGTCTAGATTCAATAAGGGAAATTGATTATAGGATAGCTAGAAAGAGTGACTAATGTTTTGGAAAAATATAGAGCTTCTTTATACCAGAAAATATATACAATAACAATTTGAATCCTATCCTTCAATCATTTTTTTCTTTTCTTATAATTTCGAAAAAATATTTACATTCCTCTTTCTCTAATTACATATTTACAGAAAATATGAATATTGAGAAAGACGAGGAAGACGTGCCGCCGACGAGATGGGAGAATATTGTAGAATTCATCATGTTCCGCTTCCGATGGCTCTTTGTTGTCCCATTCCTGCTTCCACTATCGTTCCTCTTCAATACTGTCTTYGATATCAGGAATCGGCTGATTCATTTGGTCAACTCGGCGCCAAACGCTCATGTGAGAAAAGTCAACTACATTCAGGAGCAGGTAAATACATTCTCTGGAAAATCAGAAATTATTTAATTTTTATAGCTCAAAGAATGGAATGAGAATGGAAGGAAGACAAAATTGGTAAACGCTCGTCCAGGATGGCTCACAATGAGTTTCAGATTCCCACTGTACAAGGAAAATGCGACGAAAATTGCCACTGATAAGCTTTTTGATATTTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAAATGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAAGTATTTATCATAATATCACCAATATTTTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAAATCGAGTTTGCTTCTATTGAAGGAAATACGGTATGTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>435 313 187 36 29</canonical_bands>
                <polymorphic_bands>622 313 36 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGAGATGGGAGAATATTGTAG</pcr_primer_p1>
		<pcr_primer_p2>CTCATTCCATTCTTTGAGCTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACGAGATGGGAGAATATTGTAGAATTCATCATGTTCCGCTTCCGATGGCTCTTTGTTGTCCCATTCCTGCTTCCACTATCGTTCCTCTTCAATACTGTCTTCGATATCAGGAATCGGCTGATTCATTTGGTCAACTCGGCGCCAAACGCTCATGTGAGAAAAGTCAACTACATTCAGGAGCAGGTAAATACATTCTCTGGAAAATCAGAAATTATTTAATTTTTATAGCTCAAAGAATGGAATGAG</canonical_amplicon>
		<polymorphic_amplicon>ACGAGATGGGAGAATATTGTAGAATTCATCATGTTCCGCTTCCGATGGCTCTTTGTTGTCCCATTCCTGCTTCCACTATCGTTCCTCTTCAATACTGTCTTYGATATCAGGAATCGGCTGATTCATTTGGTCAACTCGGCGCCAAACGCTCATGTGAGAAAAGTCAACTACATTCAGGAGCAGGTAAATACATTCTCTGGAAAATCAGAAATTATTTAATTTTTATAGCTCAAAGAATGGAATGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37963</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1181690</contig_pos>
        <strand></strand>
        <context>aactgataaa[G/T]tatttatcat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAA</left_flank>
        <right_flank>TATTTATCATAATATCACCAATATTTTATCAATTGACAAATTTCTGATAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAAAGACGAGGAAGACGTGCCGCCGACGAGATGGGAGAATATTGTAGAATTCATCATGTTCCGCTTCCGATGGCTCTTTGTTGTCCCATTCCTGCTTCCACTATCGTTCCTCTTCAATACTGTCTTCGATATCAGGAATCGGCTGATTCATTTGGTCAACTCGGCGCCAAACGCTCATGTGAGAAAAGTCAACTACATTCAGGAGCAGGTAAATACATTCTCTGGAAAATCAGAAATTATTTAATTTTTATAGCTCAAAGAATGGAATGAGAATGGAAGGAAGACAAAATTGGTAAACGCTCGTCCAGGATGGCTCACAATGAGTTTCAGATTCCCACTGTACAAGGAAAATGCGACGAAAATTGCCACTGATAAGCTTTTTGATATTTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAAATGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAAGTATTTATCATAATATCACCAATATTTTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAAATCGAGTTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCAACAAAAAGTTTACTGCAGCAAACAAGGGTATTTTCACTTTGAGCCAATTTATCTCGGTTCCTGGAAAATATATTAAAAAGGAATCAACTGATAAATTATTCGTCATAACATCACTAATATTTTATCTGTTGACAAGTTTTCGATATCTTTCATAGGAATCGAGATAATCGAGCTCAAAGTTGAAAGCTCGGTTTCATCTAATAAACGAAATACGGTATTTTGGTTTTAACAAAAACGAAATTTTCAAATTACAAAATACATTTTTTCCAGCTCGACGTAGAAAGGATGACCATCAAGGTTGAGCCAGGAGTAACAATGGGACAGATTTCTCGTTATCTGATTCCACGTGGATACACTCT</canonical>
            <polymorphic>GAGAAAGACGAGGAAGACGTGCCGCCGACGAGATGGGAGAATATTGTAGAATTCATCATGTTCCGCTTCCGATGGCTCTTTGTTGTCCCATTCCTGCTTCCACTATCGTTCCTCTTCAATACTGTCTTCGATATCAGGAATCGGCTGATTCATTTGGTCAACTCGGCGCCAAACGCTCATGTGAGAAAAGTCAACTACATTCAGGAGCAGGTAAATACATTCTCTGGAAAATCAGAAATTATTTAATTTTTATAGCTCAAAGAATGGAATGAGAATGGAAGGAAGACAAAATTGGTAAACGCTCGTCCAGGATGGCTCACAATGAGTTTCAGATTCCCACTGTACAAGGAAAATGCGACGAAAATTGCCACTGATAAGCTTTTTGATATTTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAAATGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAAKTATTTATCATAATATCACCAATATTTTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAAATCGAGTTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCAACAAAAAGTTTACTGCAGCAAACAAGGGTATTTTCACTTTGAGCCAATTTATCTCGGTTCCTGGAAAATATATTAAAAAGGAATCAACTGATAAATTATTCGTCATAACATCACTAATATTTTATCTGTTGACAAGTTTTCGATATCTTTCATAGGAATCGAGATAATCGAGCTCAAAGTTGAAAGCTCGGTTTCATCTAATAAACGAAATACGGTATTTTGGTTTTAACAAAAACGAAATTTTCAAATTACAAAATACATTTTTTCCAGCTCGACGTAGAAAGGATGACCATCAAGGTTGAGCCAGGAGTAACAATGGGACAGATTTCTCGTTATCTGATTCCACGTGGATACACTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGGAGGTATGTTTTGGTTAT</pcr_primer_p1>
		<pcr_primer_p2>GCAGTAAACTTTTTGTTGATGA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>TTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAAATGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAAGTATTTATCATAATATCACCAATATTTTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAAATCGAGTTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCAACAAAAAGTTTACTGC</canonical_amplicon>
		<polymorphic_amplicon>TTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAAATGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAAKTATTTATCATAATATCACCAATATTTTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAAATCGAGTTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCAACAAAAAGTTTACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37964</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1181716</contig_pos>
        <strand></strand>
        <context>caccaatatt[T/A]tatcaattga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATGAAAAAGTTGCCAACTGATAAAGTATTTATCATAATATCACCAATATT</left_flank>
        <right_flank>TATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATAGTGGAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGAGATGGGAGAATATTGTAGAATTCATCATGTTCCGCTTCCGATGGCTCTTTGTTGTCCCATTCCTGCTTCCACTATCGTTCCTCTTCAATACTGTCTTCGATATCAGGAATCGGCTGATTCATTTGGTCAACTCGGCGCCAAACGCTCATGTGAGAAAAGTCAACTACATTCAGGAGCAGGTAAATACATTCTCTGGAAAATCAGAAATTATTTAATTTTTATAGCTCAAAGAATGGAATGAGAATGGAAGGAAGACAAAATTGGTAAACGCTCGTCCAGGATGGCTCACAATGAGTTTCAGATTCCCACTGTACAAGGAAAATGCGACGAAAATTGCCACTGATAAGCTTTTTGATATTTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAAATGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAAGTATTTATCATAATATCACCAATATTTTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAAATCGAGTTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCAACAAAAAGTTTACTGCAGCAAACAAGGGTATTTTCACTTTGAGCCAATTTATCTCGGTTCCTGGAAAATATATTAAAAAGGAATCAACTGATAAATTATTCGTCATAACATCACTAATATTTTATCTGTTGACAAGTTTTCGATATCTTTCATAGGAATCGAGATAATCGAGCTCAAAGTTGAAAGCTCGGTTTCATCTAATAAACGAAATACGGTATTTTGGTTTTAACAAAAACGAAATTTTCAAATTACAAAATACATTTTTTCCAGCTCGACGTAGAAAGGATGACCATCAAGGTTGAGCCAGGAGTAACAATGGGACAGATTTCTCGTTATCTGATTCCACGTGGATACACTCTTCCAGTACTCCCAGAACTCGATGATC</canonical>
            <polymorphic>GACGAGATGGGAGAATATTGTAGAATTCATCATGTTCCGCTTCCGATGGCTCTTTGTTGTCCCATTCCTGCTTCCACTATCGTTCCTCTTCAATACTGTCTTCGATATCAGGAATCGGCTGATTCATTTGGTCAACTCGGCGCCAAACGCTCATGTGAGAAAAGTCAACTACATTCAGGAGCAGGTAAATACATTCTCTGGAAAATCAGAAATTATTTAATTTTTATAGCTCAAAGAATGGAATGAGAATGGAAGGAAGACAAAATTGGTAAACGCTCGTCCAGGATGGCTCACAATGAGTTTCAGATTCCCACTGTACAAGGAAAATGCGACGAAAATTGCCACTGATAAGCTTTTTGATATTTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAAATGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAAGTATTTATCATAATATCACCAATATTWTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAAATCGAGTTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCAACAAAAAGTTTACTGCAGCAAACAAGGGTATTTTCACTTTGAGCCAATTTATCTCGGTTCCTGGAAAATATATTAAAAAGGAATCAACTGATAAATTATTCGTCATAACATCACTAATATTTTATCTGTTGACAAGTTTTCGATATCTTTCATAGGAATCGAGATAATCGAGCTCAAAGTTGAAAGCTCGGTTTCATCTAATAAACGAAATACGGTATTTTGGTTTTAACAAAAACGAAATTTTCAAATTACAAAATACATTTTTTCCAGCTCGACGTAGAAAGGATGACCATCAAGGTTGAGCCAGGAGTAACAATGGGACAGATTTCTCGTTATCTGATTCCACGTGGATACACTCTTCCAGTACTCCCAGAACTCGATGATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGGAGGTATGTTTTGGTTAT</pcr_primer_p1>
		<pcr_primer_p2>GCAGTAAACTTTTTGTTGATGA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>TTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAAATGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAAGTATTTATCATAATATCACCAATATTTTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAAATCGAGTTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCAACAAAAAGTTTACTGC</canonical_amplicon>
		<polymorphic_amplicon>TTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAAATGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAAGTATTTATCATAATATCACCAATATTWTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAAATCGAGTTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCAACAAAAAGTTTACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37965</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1181761</contig_pos>
        <strand></strand>
        <context>aatcgagata[G/A]tggagcttaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATATTTTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATA</left_flank>
        <right_flank>TGGAGCTTAAAGTTGAGAAATCGAGTTTGCTTCTATTGAAGGAAATACGG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGCTCTTTGTTGTCCCATTCCTGCTTCCACTATCGTTCCTCTTCAATACTGTCTTCGATATCAGGAATCGGCTGATTCATTTGGTCAACTCGGCGCCAAACGCTCATGTGAGAAAAGTCAACTACATTCAGGAGCAGGTAAATACATTCTCTGGAAAATCAGAAATTATTTAATTTTTATAGCTCAAAGAATGGAATGAGAATGGAAGGAAGACAAAATTGGTAAACGCTCGTCCAGGATGGCTCACAATGAGTTTCAGATTCCCACTGTACAAGGAAAATGCGACGAAAATTGCCACTGATAAGCTTTTTGATATTTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAAATGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAAGTATTTATCATAATATCACCAATATTTTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAAATCGAGTTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCAACAAAAAGTTTACTGCAGCAAACAAGGGTATTTTCACTTTGAGCCAATTTATCTCGGTTCCTGGAAAATATATTAAAAAGGAATCAACTGATAAATTATTCGTCATAACATCACTAATATTTTATCTGTTGACAAGTTTTCGATATCTTTCATAGGAATCGAGATAATCGAGCTCAAAGTTGAAAGCTCGGTTTCATCTAATAAACGAAATACGGTATTTTGGTTTTAACAAAAACGAAATTTTCAAATTACAAAATACATTTTTTCCAGCTCGACGTAGAAAGGATGACCATCAAGGTTGAGCCAGGAGTAACAATGGGACAGATTTCTCGTTATCTGATTCCACGTGGATACACTCTTCCAGTACTCCCAGAACTCGATGATCTGACAATCGGAGGACTCATTAATGGATGTGGAGTAGAATCTGGCT</canonical>
            <polymorphic>ATGGCTCTTTGTTGTCCCATTCCTGCTTCCACTATCGTTCCTCTTCAATACTGTCTTCGATATCAGGAATCGGCTGATTCATTTGGTCAACTCGGCGCCAAACGCTCATGTGAGAAAAGTCAACTACATTCAGGAGCAGGTAAATACATTCTCTGGAAAATCAGAAATTATTTAATTTTTATAGCTCAAAGAATGGAATGAGAATGGAAGGAAGACAAAATTGGTAAACGCTCGTCCAGGATGGCTCACAATGAGTTTCAGATTCCCACTGTACAAGGAAAATGCGACGAAAATTGCCACTGATAAGCTTTTTGATATTTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAAATGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAAGTATTTATCATAATATCACCAATATTTTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATARTGGAGCTTAAAGTTGAGAAATCGAGTTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCAACAAAAAGTTTACTGCAGCAAACAAGGGTATTTTCACTTTGAGCCAATTTATCTCGGTTCCTGGAAAATATATTAAAAAGGAATCAACTGATAAATTATTCGTCATAACATCACTAATATTTTATCTGTTGACAAGTTTTCGATATCTTTCATAGGAATCGAGATAATCGAGCTCAAAGTTGAAAGCTCGGTTTCATCTAATAAACGAAATACGGTATTTTGGTTTTAACAAAAACGAAATTTTCAAATTACAAAATACATTTTTTCCAGCTCGACGTAGAAAGGATGACCATCAAGGTTGAGCCAGGAGTAACAATGGGACAGATTTCTCGTTATCTGATTCCACGTGGATACACTCTTCCAGTACTCCCAGAACTCGATGATCTGACAATCGGAGGACTCATTAATGGATGTGGAGTAGAATCTGGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>232 147 136 104 81 77 60 39 31 31 20 17 15 6 4</canonical_bands>
                <polymorphic_bands>232 147 136 121 81 77 60 39 31 31 20 15 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGGAGGTATGTTTTGGTTAT</pcr_primer_p1>
		<pcr_primer_p2>GCAGTAAACTTTTTGTTGATGA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>TTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAAATGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAAGTATTTATCATAATATCACCAATATTTTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAAATCGAGTTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCAACAAAAAGTTTACTGC</canonical_amplicon>
		<polymorphic_amplicon>TTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAAATGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAAGTATTTATCATAATATCACCAATATTTTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATARTGGAGCTTAAAGTTGAGAAATCGAGTTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCAACAAAAAGTTTACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37966</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1181781</contig_pos>
        <strand></strand>
        <context>aagttgagaa[A/C]tcgrktttgc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCTGATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAA</left_flank>
        <right_flank>TCGAGTTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTGCTTCCACTATCGTTCCTCTTCAATACTGTCTTCGATATCAGGAATCGGCTGATTCATTTGGTCAACTCGGCGCCAAACGCTCATGTGAGAAAAGTCAACTACATTCAGGAGCAGGTAAATACATTCTCTGGAAAATCAGAAATTATTTAATTTTTATAGCTCAAAGAATGGAATGAGAATGGAAGGAAGACAAAATTGGTAAACGCTCGTCCAGGATGGCTCACAATGAGTTTCAGATTCCCACTGTACAAGGAAAATGCGACGAAAATTGCCACTGATAAGCTTTTTGATATTTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAAATGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAAGTATTTATCATAATATCACCAATATTTTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAAATCGAGTTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCAACAAAAAGTTTACTGCAGCAAACAAGGGTATTTTCACTTTGAGCCAATTTATCTCGGTTCCTGGAAAATATATTAAAAAGGAATCAACTGATAAATTATTCGTCATAACATCACTAATATTTTATCTGTTGACAAGTTTTCGATATCTTTCATAGGAATCGAGATAATCGAGCTCAAAGTTGAAAGCTCGGTTTCATCTAATAAACGAAATACGGTATTTTGGTTTTAACAAAAACGAAATTTTCAAATTACAAAATACATTTTTTCCAGCTCGACGTAGAAAGGATGACCATCAAGGTTGAGCCAGGAGTAACAATGGGACAGATTTCTCGTTATCTGATTCCACGTGGATACACTCTTCCAGTACTCCCAGAACTCGATGATCTGACAATCGGAGGACTCATTAATGGATGTGGAGTAGAATCTGGCTCCTTCCGACACGGAATGTTC</canonical>
            <polymorphic>TCCTGCTTCCACTATCGTTCCTCTTCAATACTGTCTTCGATATCAGGAATCGGCTGATTCATTTGGTCAACTCGGCGCCAAACGCTCATGTGAGAAAAGTCAACTACATTCAGGAGCAGGTAAATACATTCTCTGGAAAATCAGAAATTATTTAATTTTTATAGCTCAAAGAATGGAATGAGAATGGAAGGAAGACAAAATTGGTAAACGCTCGTCCAGGATGGCTCACAATGAGTTTCAGATTCCCACTGTACAAGGAAAATGCGACGAAAATTGCCACTGATAAGCTTTTTGATATTTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAAATGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAAGTATTTATCATAATATCACCAATATTTTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAAMTCGAGTTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCAACAAAAAGTTTACTGCAGCAAACAAGGGTATTTTCACTTTGAGCCAATTTATCTCGGTTCCTGGAAAATATATTAAAAAGGAATCAACTGATAAATTATTCGTCATAACATCACTAATATTTTATCTGTTGACAAGTTTTCGATATCTTTCATAGGAATCGAGATAATCGAGCTCAAAGTTGAAAGCTCGGTTTCATCTAATAAACGAAATACGGTATTTTGGTTTTAACAAAAACGAAATTTTCAAATTACAAAATACATTTTTTCCAGCTCGACGTAGAAAGGATGACCATCAAGGTTGAGCCAGGAGTAACAATGGGACAGATTTCTCGTTATCTGATTCCACGTGGATACACTCTTCCAGTACTCCCAGAACTCGATGATCTGACAATCGGAGGACTCATTAATGGATGTGGAGTAGAATCTGGCTCCTTCCGACACGGAATGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGGAGGTATGTTTTGGTTAT</pcr_primer_p1>
		<pcr_primer_p2>GCAGTAAACTTTTTGTTGATGA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>TTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAAATGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAAGTATTTATCATAATATCACCAATATTTTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAAATCGAGTTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCAACAAAAAGTTTACTGC</canonical_amplicon>
		<polymorphic_amplicon>TTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAAATGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAAGTATTTATCATAATATCACCAATATTTTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAAMTCGAGTTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCAACAAAAAGTTTACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37967</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1181785</contig_pos>
        <strand></strand>
        <context>tgagaamtcg[A/G]ktttgcttct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAAATCG</left_flank>
        <right_flank>GTTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCAACAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTTCCACTATCGTTCCTCTTCAATACTGTCTTCGATATCAGGAATCGGCTGATTCATTTGGTCAACTCGGCGCCAAACGCTCATGTGAGAAAAGTCAACTACATTCAGGAGCAGGTAAATACATTCTCTGGAAAATCAGAAATTATTTAATTTTTATAGCTCAAAGAATGGAATGAGAATGGAAGGAAGACAAAATTGGTAAACGCTCGTCCAGGATGGCTCACAATGAGTTTCAGATTCCCACTGTACAAGGAAAATGCGACGAAAATTGCCACTGATAAGCTTTTTGATATTTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAAATGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAAGTATTTATCATAATATCACCAATATTTTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAAATCGAGTTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCAACAAAAAGTTTACTGCAGCAAACAAGGGTATTTTCACTTTGAGCCAATTTATCTCGGTTCCTGGAAAATATATTAAAAAGGAATCAACTGATAAATTATTCGTCATAACATCACTAATATTTTATCTGTTGACAAGTTTTCGATATCTTTCATAGGAATCGAGATAATCGAGCTCAAAGTTGAAAGCTCGGTTTCATCTAATAAACGAAATACGGTATTTTGGTTTTAACAAAAACGAAATTTTCAAATTACAAAATACATTTTTTCCAGCTCGACGTAGAAAGGATGACCATCAAGGTTGAGCCAGGAGTAACAATGGGACAGATTTCTCGTTATCTGATTCCACGTGGATACACTCTTCCAGTACTCCCAGAACTCGATGATCTGACAATCGGAGGACTCATTAATGGATGTGGAGTAGAATCTGGCTCCTTCCGACACGGAATGTTCCAGC</canonical>
            <polymorphic>GCTTCCACTATCGTTCCTCTTCAATACTGTCTTCGATATCAGGAATCGGCTGATTCATTTGGTCAACTCGGCGCCAAACGCTCATGTGAGAAAAGTCAACTACATTCAGGAGCAGGTAAATACATTCTCTGGAAAATCAGAAATTATTTAATTTTTATAGCTCAAAGAATGGAATGAGAATGGAAGGAAGACAAAATTGGTAAACGCTCGTCCAGGATGGCTCACAATGAGTTTCAGATTCCCACTGTACAAGGAAAATGCGACGAAAATTGCCACTGATAAGCTTTTTGATATTTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAAATGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAAGTATTTATCATAATATCACCAATATTTTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAAATCGRGTTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCAACAAAAAGTTTACTGCAGCAAACAAGGGTATTTTCACTTTGAGCCAATTTATCTCGGTTCCTGGAAAATATATTAAAAAGGAATCAACTGATAAATTATTCGTCATAACATCACTAATATTTTATCTGTTGACAAGTTTTCGATATCTTTCATAGGAATCGAGATAATCGAGCTCAAAGTTGAAAGCTCGGTTTCATCTAATAAACGAAATACGGTATTTTGGTTTTAACAAAAACGAAATTTTCAAATTACAAAATACATTTTTTCCAGCTCGACGTAGAAAGGATGACCATCAAGGTTGAGCCAGGAGTAACAATGGGACAGATTTCTCGTTATCTGATTCCACGTGGATACACTCTTCCAGTACTCCCAGAACTCGATGATCTGACAATCGGAGGACTCATTAATGGATGTGGAGTAGAATCTGGCTCCTTCCGACACGGAATGTTCCAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>435 189 105 104 76 34 29 19 9</canonical_bands>
                <polymorphic_bands>435 218 105 104 76 34 19 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGGAGGTATGTTTTGGTTAT</pcr_primer_p1>
		<pcr_primer_p2>GCAGTAAACTTTTTGTTGATGA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>TTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAAATGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAAGTATTTATCATAATATCACCAATATTTTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAAATCGAGTTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCAACAAAAAGTTTACTGC</canonical_amplicon>
		<polymorphic_amplicon>TTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAAATGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAAGTATTTATCATAATATCACCAATATTTTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAAATCGRGTTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCAACAAAAAGTTTACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37968</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1181786</contig_pos>
        <strand></strand>
        <context>gagaamtcgr[G/T]tttgcttcta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAAATCGA</left_flank>
        <right_flank>TTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCAACAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCCACTATCGTTCCTCTTCAATACTGTCTTCGATATCAGGAATCGGCTGATTCATTTGGTCAACTCGGCGCCAAACGCTCATGTGAGAAAAGTCAACTACATTCAGGAGCAGGTAAATACATTCTCTGGAAAATCAGAAATTATTTAATTTTTATAGCTCAAAGAATGGAATGAGAATGGAAGGAAGACAAAATTGGTAAACGCTCGTCCAGGATGGCTCACAATGAGTTTCAGATTCCCACTGTACAAGGAAAATGCGACGAAAATTGCCACTGATAAGCTTTTTGATATTTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAAATGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAAGTATTTATCATAATATCACCAATATTTTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAAATCGAGTTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCAACAAAAAGTTTACTGCAGCAAACAAGGGTATTTTCACTTTGAGCCAATTTATCTCGGTTCCTGGAAAATATATTAAAAAGGAATCAACTGATAAATTATTCGTCATAACATCACTAATATTTTATCTGTTGACAAGTTTTCGATATCTTTCATAGGAATCGAGATAATCGAGCTCAAAGTTGAAAGCTCGGTTTCATCTAATAAACGAAATACGGTATTTTGGTTTTAACAAAAACGAAATTTTCAAATTACAAAATACATTTTTTCCAGCTCGACGTAGAAAGGATGACCATCAAGGTTGAGCCAGGAGTAACAATGGGACAGATTTCTCGTTATCTGATTCCACGTGGATACACTCTTCCAGTACTCCCAGAACTCGATGATCTGACAATCGGAGGACTCATTAATGGATGTGGAGTAGAATCTGGCTCCTTCCGACACGGAATGTTCCAGCA</canonical>
            <polymorphic>CTTCCACTATCGTTCCTCTTCAATACTGTCTTCGATATCAGGAATCGGCTGATTCATTTGGTCAACTCGGCGCCAAACGCTCATGTGAGAAAAGTCAACTACATTCAGGAGCAGGTAAATACATTCTCTGGAAAATCAGAAATTATTTAATTTTTATAGCTCAAAGAATGGAATGAGAATGGAAGGAAGACAAAATTGGTAAACGCTCGTCCAGGATGGCTCACAATGAGTTTCAGATTCCCACTGTACAAGGAAAATGCGACGAAAATTGCCACTGATAAGCTTTTTGATATTTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAAATGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAAGTATTTATCATAATATCACCAATATTTTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAAATCGAKTTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCAACAAAAAGTTTACTGCAGCAAACAAGGGTATTTTCACTTTGAGCCAATTTATCTCGGTTCCTGGAAAATATATTAAAAAGGAATCAACTGATAAATTATTCGTCATAACATCACTAATATTTTATCTGTTGACAAGTTTTCGATATCTTTCATAGGAATCGAGATAATCGAGCTCAAAGTTGAAAGCTCGGTTTCATCTAATAAACGAAATACGGTATTTTGGTTTTAACAAAAACGAAATTTTCAAATTACAAAATACATTTTTTCCAGCTCGACGTAGAAAGGATGACCATCAAGGTTGAGCCAGGAGTAACAATGGGACAGATTTCTCGTTATCTGATTCCACGTGGATACACTCTTCCAGTACTCCCAGAACTCGATGATCTGACAATCGGAGGACTCATTAATGGATGTGGAGTAGAATCTGGCTCCTTCCGACACGGAATGTTCCAGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGGAGGTATGTTTTGGTTAT</pcr_primer_p1>
		<pcr_primer_p2>GCAGTAAACTTTTTGTTGATGA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>TTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAAATGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAAGTATTTATCATAATATCACCAATATTTTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAAATCGAGTTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCAACAAAAAGTTTACTGC</canonical_amplicon>
		<polymorphic_amplicon>TTTGGAGGTATGTTTTGGTTATAAAGCTTTATCAAAAAATGTTTACCGTAACTTTTAGCCAATTTATCTCGGTTCCTGACAAAGATATGAAAAAGTTGCCAACTGATAAAGTATTTATCATAATATCACCAATATTTTATCAATTGACAAATTTCTGATATCTTACACAGTAATCGAGATAGTGGAGCTTAAAGTTGAGAAATCGAKTTTGCTTCTATTGAAGGAAATACGGTATGTTAAGATGATTCATCAACAAAAAGTTTACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37969</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1204426</contig_pos>
        <strand></strand>
        <context>aaaatataaa[A/C]aacctattca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGCCCCCTGCCTTTGAGCAATTTTATCTTGGTAGCTATGAAAAATATAAA</left_flank>
        <right_flank>AACCTATTCACTGATAAAATGTTGGTGATTTTATAATTAACATTTTCCCA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAATGTTTTGCGATTTTCTTGGGTTCTGTCACATGCCTATAAAATTCCCAGATGACACCTAGGAGCTATATAATCAACAGTTGACGTTGATAGACACCATTTTTTCTTTTTTTCTCGAAAGTGTGTTATTTTTTTGGTATAATCCAAGGTGTAACAGTTGGGACATTAATTGGTCAGATATAGAGGAGAATAAAGGTCTGAAAATAAAATAGTTTCGGAGCCCTGATATCCAAAAAGGTTGTTTTTTTTTTAATATTTTGGTAGATTTTTTTGAATTTAACAATTTAATTAACCAATAAATTCAACTAAATTATTTCTTTTTTTTCTCTATTTTTTGTTTTGAAAATTGTAATAGATGAGTCCACTCATTGTCACGTTTGAGTTGAAAAATTTAAATTTCTATGAAAATTATTTATAACTTTGTATACCATAAAACCTGTAATAGAAGAGCCCCCTGCCTTTGAGCAATTTTATCTTGGTAGCTATGAAAAATATAAAAAACCTATTCACTGATAAAATGTTGGTGATTTTATAATTAACATTTTCCCAGTTGTCCACTTTTTGGAATCTTTCACAGTAACCAAGATGAATGGGGCTTACAGTTACAAGTAGAGGAACGTAATATTACCGGTTTTACGGTACACAAACATTTGAATCAATATGATTTTTTTAATTATAAGATCATTTTACAAAAAAATAAATTTTCTGGTACCGGAAGATCAACTTAAAGTGAGAAATTGGACTTGTTGAATCATTCTAATTCAATTTTTGTACCAATTTTTTGTATTTTCCGAACCGATGTCTTGCAATAATCCTTCTGTCCTTTTACGAGTCAGTTACAGCCAAACCACAACTCTGGTCAAAACTTCAGATGACGTGGACGTCATGGGTCGGGCCAGAATCGCTAGAAAATTTCTAGTGGCTTGTTTCTTTGTTTCTTCTCACTGCAGTGAACAGTGTAAAAATTTTATAAAAGTTCTACTAGCCCGATCGACGGGT</canonical>
            <polymorphic>ATAATGTTTTGCGATTTTCTTGGGTTCTGTCACATGCCTATAAAATTCCCAGATGACACCTAGGAGCTATATAATCAACAGTTGACGTTGATAGACACCATTTTTTCTTTTTTTCTCGAAAGTGTGTTATTTTTTTGGTATAATCCAAGGTGTAACAGTTGGGACATTAATTGGTCAGATATAGAGGAGAATAAAGGTCTGAAAATAAAATAGTTTCGGAGCCCTGATATCCAAAAAGGTTGTTTTTTTTTTAATATTTTGGTAGATTTTTTTGAATTTAACAATTTAATTAACCAATAAATTCAACTAAATTATTTCTTTTTTTTCTCTATTTTTTGTTTTGAAAATTGTAATAGATGAGTCCACTCATTGTCACGTTTGAGTTGAAAAATTTAAATTTCTATGAAAATTATTTATAACTTTGTATACCATAAAACCTGTAATAGAAGAGCCCCCTGCCTTTGAGCAATTTTATCTTGGTAGCTATGAAAAATATAAAMAACCTATTCACTGATAAAATGTTGGTGATTTTATAATTAACATTTTCCCAGTTGTCCACTTTTTGGAATCTTTCACAGTAACCAAGATGAATGGGGCTTACAGTTACAAGTAGAGGAACGTAATATTACCGGTTTTACGGTACACAAACATTTGAATCAATATGATTTTTTTAATTATAAGATCATTTTACAAAAAAATAAATTTTCTGGTACCGGAAGATCAACTTAAAGTGAGAAATTGGACTTGTTGAATCATTCTAATTCAATTTTTGTACCAATTTTTTGTATTTTCCGAACCGATGTCTTGCAATAATCCTTCTGTCCTTTTACGAGTCAGTTACAGCCAAACCACAACTCTGGTCAAAACTTCAGATGACGTGGACGTCATGGGTCGGGCCAGAATCGCTAGAAAATTTCTAGTGGCTTGTTTCTTTGTTTCTTCTCACTGCAGTGAACAGTGTAAAAATTTTATAAAAGTTCTACTAGCCCGATCGACGGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCACGTTTGAGTTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATTTCTCACTTTAAGTTGATCTTC</pcr_primer_p2>
		<pcr_amplicon_size>370</pcr_amplicon_size>
		<canonical_amplicon>TGTCACGTTTGAGTTGAAAAATTTAAATTTCTATGAAAATTATTTATAACTTTGTATACCATAAAACCTGTAATAGAAGAGCCCCCTGCCTTTGAGCAATTTTATCTTGGTAGCTATGAAAAATATAAAAAACCTATTCACTGATAAAATGTTGGTGATTTTATAATTAACATTTTCCCAGTTGTCCACTTTTTGGAATCTTTCACAGTAACCAAGATGAATGGGGCTTACAGTTACAAGTAGAGGAACGTAATATTACCGGTTTTACGGTACACAAACATTTGAATCAATATGATTTTTTTAATTATAAGATCATTTTACAAAAAAATAAATTTTCTGGTACCGGAAGATCAACTTAAAGTGAGAAATT</canonical_amplicon>
		<polymorphic_amplicon>TGTCACGTTTGAGTTGAAAAATTTAAATTTCTATGAAAATTATTTATAACTTTGTATACCATAAAACCTGTAATAGAAGAGCCCCCTGCCTTTGAGCAATTTTATCTTGGTAGCTATGAAAAATATAAAMAACCTATTCACTGATAAAATGTTGGTGATTTTATAATTAACATTTTCCCAGTTGTCCACTTTTTGGAATCTTTCACAGTAACCAAGATGAATGGGGCTTACAGTTACAAGTAGAGGAACGTAATATTACCGGTTTTACGGTACACAAACATTTGAATCAATATGATTTTTTTAATTATAAGATCATTTTACAAAAAAATAAATTTTCTGGTACCGGAAGATCAACTTAAAGTGAGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37970</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1206824</contig_pos>
        <strand>+</strand>
        <context>AACCTTCCAA[C/T]CCAGTGAGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAGTATCCAGGAGACCTTCGCGCTGTGAAACGCAAGCGGAACCTTCCAA</left_flank>
        <right_flank>CCAGTGAGTCATCGATTCTGAAAATCAAAATCATTTTTCAAAATCTCAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTTGCATTCACAGAATTTTTTAAAATTCCTAGTTTTTCCGCTACTTGCCGATTTCTGAAAGACATTTTTTTGGCCCGTTTTTATACTGAAATATGAAAAAACAGGTCTTCCGGAAGTCGATTAATAGTTGAAAAACTGGGGATTTTGAAACAGTTACGTGAACGAATGTTTCCAAGAGGTTTATTTTGCAACTTCAAACGATTTTGGAGGGATCTGAAACTTAACAAACGAGCTCCAGACTTCGCAACGGTCTAAATAGCTTAAAATCAACCAAAAATACGTTTTTTATATATCTTATTGACCGTTACTGTAAATTGAGCATTGATTCCTGAATGAAATAATGATTCTCAAAAAACAAAGGATTAAAAAACAATTTGCTCTTTCCTTCCAGAACAAACGTACACCAGTTCCACCAAAAGAGGAAGAGACCAACGAGGACAGTCTTTTTAAGTATCCAGGAGACCTTCGCGCTGTGAAACGCAAGCGGAACCTTCCAATCCAGTGAGTCATCGATTCTGAAAATCAAAATCATTTTTCAAAATCTCAGATCCAACAAGACCTCAAGTGTTGGTGCCAAACGCAAGATGATGGCGCATCAAAAATCAATTCGCGAGGGAGAAGACGCCGAGGGTTCATCAGAGATCAGCAAAGCTGATAACAAGGAGGCCGGAAAAGAGCAAGAGCCGGAAGAGGATGACGAGAAGTGAATCTCTGATTTAAAAATTTTTTGTACACACCGTGTTCCCATTAACCCTATTTTTTGTATAAACAATATAAGAAATTTGTGTAAACGTTTGTACTTTGAACACAATTTCGAACAATGAGCAAGCTATGAATAAAATTGTCAGCCTTCAATATAAATTCAAATTTTTGGCTTCAAAAGATATTATGGAAAAAATATAGAAAAAATAATGAGAAGAAATATTTGACTTTTCAAAATAAGAAATGGATATATGAAAAGAAAAGTGGTCTGTTTCCAGTTAGTCTTAAACGAACTT</canonical>
            <polymorphic>ACTTTGCATTCACAGAATTTTTTAAAATTCCTAGTTTTTCCGCTACTTGCCGATTTCTGAAAGACATTTTTTTGGCCCGTTTTTATACTGAAATATGAAAAAACAGGTCTTCCGGAAGTCGATTAATAGTTGAAAAACTGGGGATTTTGAAACAGTTACGTGAACGAATGTTTCCAAGAGGTTTATTTTGCAACTTCAAACGATTTTGGAGGGATCTGAAACTTAACAAACGAGCTCCAGACTTCGCAACGGTCTAAATAGCTTAAAATCAACCAAAAATACGTTTTTTATATATCTTATTGACCGTTACTGTAAATTGAGCATTGATTCCTGAATGAAATAATGATTCTCAAAAAACAAAGGATTAAAAAACAATTTGCTCTTTCCTTCCAGAACAAACGTACACCAGTTCCACCAAAAGAGGAAGAGACCAACGAGGACAGTCTTTTTAAGTATCCAGGAGACCTTCGCGCTGTGAAACGCAAGCGGAACCTTCCAAYCCAGTGAGTCATCGATTCTGAAAATCAAAATCATTTTTCAAAATCTCAGATCCAACAAGACCTCAAGTGTTGGTGCCAAACGCAAGATGATGGCGCATCAAAAATCAATTCGCGAGGGAGAAGACGCCGAGGGTTCATCAGAGATCAGCAAAGCTGATAACAAGGAGGCCGGAAAAGAGCAAGAGCCGGAAGAGGATGACGAGAAGTGAATCTCTGATTTAAAAATTTTTTGTACACACCGTGTTCCCATTAACCCTATTTTTTGTATAAACAATATAAGAAATTTGTGTAAACGTTTGTACTTTGAACACAATTTCGAACAATGAGCAAGCTATGAATAAAATTGTCAGCCTTCAATATAAATTCAAATTTTTGGCTTCAAAAGATATTATGGAAAAAATATAGAAAAAATAATGAGAAGAAATATTTGACTTTTCAAAATAAGAAATGGATATATGAAAAGAAAAGTGGTCTGTTTCCAGTTAGTCTTAAACGAACTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGATTCCTGAATGAAATAATG</pcr_primer_p1>
		<pcr_primer_p2>ACTTGAGGTCTTGTTGGATCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTGATTCCTGAATGAAATAATGATTCTCAAAAAACAAAGGATTAAAAAACAATTTGCTCTTTCCTTCCAGAACAAACGTACACCAGTTCCACCAAAAGAGGAAGAGACCAACGAGGACAGTCTTTTTAAGTATCCAGGAGACCTTCGCGCTGTGAAACGCAAGCGGAACCTTCCAATCCAGTGAGTCATCGATTCTGAAAATCAAAATCATTTTTCAAAATCTCAGATCCAACAAGACCTCAAGT</canonical_amplicon>
		<polymorphic_amplicon>ATTGATTCCTGAATGAAATAATGATTCTCAAAAAACAAAGGATTAAAAAACAATTTGCTCTTTCCTTCCAGAACAAACGTACACCAGTTCCACCAAAAGAGGAAGAGACCAACGAGGACAGTCTTTTTAAGTATCCAGGAGACCTTCGCGCTGTGAAACGCAAGCGGAACCTTCCAAYCCAGTGAGTCATCGATTCTGAAAATCAAAATCATTTTTCAAAATCTCAGATCCAACAAGACCTCAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37971</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1253330</contig_pos>
        <strand>+</strand>
        <context>CACTCCATTA[A/G]TGGAGTGTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCATTCATCTCATTCACTATTACGATTCCGCCACACCGCACTCCATTA</left_flank>
        <right_flank>TGGAGTGTTGTATGCAGGAATCCGATAATTACAACAGCGCATAATAGTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCACGCAAACCGGCGAATTTGAGCTCGTTTATTTCGATTCCTGTGAAAGATATCAACAATTTGTCAACTGATACATTATTCATGATAATATCACAGAGGCTTTATCAGTTGACAAACTTTCAGTATTTTTTACAGGAATCGAGATAAATTGGCTCAAAGCTGAAAGCTAGGTAGGTTTCTTTATAAAAATCTTGCGGTAGAATTTTTTCACATTACCTAAATCTCCAATACAATTCAAGTCGCAGTTTTTCTTCATGACTTATCTAATTATCATTACACATTTTAGTGAATTACAATTTTCTAATAAAACTATTCAAATGATTCTCTCATTTCAATAGTAAAAACCCTCACCCGTTTTCGCCGACACTTCGTATAGTGAAACGCCCAATCGTGAAGCCAGTCTTTCAGCGCGATCGAAGTCAACCTGAAAATGCATAAGTAGTCATGTTTTTCATTCATCTCATTCACTATTACGATTCCGCCACACCGCACTCCATTAATGGAGTGTTGTATGCAGGAATCCGATAATTACAACAGCGCATAATAGTTACGATTAAGGATGTTTTTCCCCTGTCTTCGTTTCTTCATGTGTTGGGCCCTGCCTTCGATATTCCTTAGTGTTACAAATGTAACTCAATCAAATTGTTTGGACACATCCCTCATCCCTCATACACACACACACACACACACAATTCGTCAGTCAATATATAAAATGTGTGTGTAACATTGCTTTTGCACAATTCCGATTCACAACTTATGAAGAGAAGGTTTTCATTGTAATATTGTGTTGAAGAGTGCCCCCCGTTCCAAATGCCTCTTCAGAAAATTCCCAAAAAGTGCATCAAAGAGCTCTGGGAGGCTCGAAAAAGGCTCGAAAAACAAATTGAGTAGTAGTTCCCCCCTTCTATTCCCGCTCCGGACACTGGAACAAGATGGATGGTGGTCGAACGGCCTAATTGGTTGCACGAAACAAAAAAGAGGCAATGGATTCGGAGCTGCG</canonical>
            <polymorphic>CCACGCAAACCGGCGAATTTGAGCTCGTTTATTTCGATTCCTGTGAAAGATATCAACAATTTGTCAACTGATACATTATTCATGATAATATCACAGAGGCTTTATCAGTTGACAAACTTTCAGTATTTTTTACAGGAATCGAGATAAATTGGCTCAAAGCTGAAAGCTAGGTAGGTTTCTTTATAAAAATCTTGCGGTAGAATTTTTTCACATTACCTAAATCTCCAATACAATTCAAGTCGCAGTTTTTCTTCATGACTTATCTAATTATCATTACACATTTTAGTGAATTACAATTTTCTAATAAAACTATTCAAATGATTCTCTCATTTCAATAGTAAAAACCCTCACCCGTTTTCGCCGACACTTCGTATAGTGAAACGCCCAATCGTGAAGCCAGTCTTTCAGCGCGATCGAAGTCAACCTGAAAATGCATAAGTAGTCATGTTTTTCATTCATCTCATTCACTATTACGATTCCGCCACACCGCACTCCATTARTGGAGTGTTGTATGCAGGAATCCGATAATTACAACAGCGCATAATAGTTACGATTAAGGATGTTTTTCCCCTGTCTTCGTTTCTTCATGTGTTGGGCCCTGCCTTCGATATTCCTTAGTGTTACAAATGTAACTCAATCAAATTGTTTGGACACATCCCTCATCCCTCATACACACACACACACACACACAATTCGTCAGTCAATATATAAAATGTGTGTGTAACATTGCTTTTGCACAATTCCGATTCACAACTTATGAAGAGAAGGTTTTCATTGTAATATTGTGTTGAAGAGTGCCCCCCGTTCCAAATGCCTCTTCAGAAAATTCCCAAAAAGTGCATCAAAGAGCTCTGGGAGGCTCGAAAAAGGCTCGAAAAACAAATTGAGTAGTAGTTCCCCCCTTCTATTCCCGCTCCGGACACTGGAACAAGATGGATGGTGGTCGAACGGCCTAATTGGTTGCACGAAACAAAAAAGAGGCAATGGATTCGGAGCTGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>497 446 57</canonical_bands>
                <polymorphic_bands>554 446</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACTATTCAAATGATTCTCTCAT</pcr_primer_p1>
		<pcr_primer_p2>AATCGTAACTATTATGCGCTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAACTATTCAAATGATTCTCTCATTTCAATAGTAAAAACCCTCACCCGTTTTCGCCGACACTTCGTATAGTGAAACGCCCAATCGTGAAGCCAGTCTTTCAGCGCGATCGAAGTCAACCTGAAAATGCATAAGTAGTCATGTTTTTCATTCATCTCATTCACTATTACGATTCCGCCACACCGCACTCCATTAATGGAGTGTTGTATGCAGGAATCCGATAATTACAACAGCGCATAATAGTTACGATT</canonical_amplicon>
		<polymorphic_amplicon>AAAACTATTCAAATGATTCTCTCATTTCAATAGTAAAAACCCTCACCCGTTTTCGCCGACACTTCGTATAGTGAAACGCCCAATCGTGAAGCCAGTCTTTCAGCGCGATCGAAGTCAACCTGAAAATGCATAAGTAGTCATGTTTTTCATTCATCTCATTCACTATTACGATTCCGCCACACCGCACTCCATTARTGGAGTGTTGTATGCAGGAATCCGATAATTACAACAGCGCATAATAGTTACGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37972</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1254970</contig_pos>
        <strand>+</strand>
        <context>TCATTTTCTA[A/G]ATTATTCCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGATTGGAATTGGTTGGACTAGGTTTGATTGATTAGAAGTCATTTTCTA</left_flank>
        <right_flank>ATTATTCCCTCACTGATCAAGTTTCAAGGTACCAAACTTGTACCAAACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCGCCGAGTGGTAGTACGAGTTGTATATCGTTCGGTATCGCTCCATTCCAGCGGTATCCCACAGTTCTAATCGGATCTGCAATCAATTCGAAAATAATTGCTGACCAGAAAGATGGTTATCAGTGTGATTCATTTGTGTGGGAGTTTCTGATAAGAGACACCAAAAAATAGAGTGTTCAAAACTCCAAATTAAAAATCAATGTCTATTTTCTCAAAACGATATTTTTTCGATATTTGCCAAAGATTGGAACAGGAGAGGAAATCCTACATACACACAAAGGGTAAAGCAAACAAAAAAGGTTACCTTATCCCGTCCCAGTTTGATAGTTTTCAATTTGAAATCCACGCCTAGTGTACTAATGTGATCCATTCTGAAGTTGTTCTCGGCGAACCTCAGAAGAATGCATGATTTGCCGCAATTGTGATCCCCAACGACAACTATCTGTAATTGATTGGAATTGGTTGGACTAGGTTTGATTGATTAGAAGTCATTTTCTAGATTATTCCCTCACTGATCAAGTTTCAAGGTACCAAACTTGTACCAAACTTGGAAAATAGACTTCTTTCTCCTTAAAAACATATGCCCCTTGGGACAACTCGTTCCTAACTCCTAGCATAATTTGTTCATATATTTTCTACACCAGCAAACACACCAGCCGTCCATAAATTGTTTTCACTACTGTGTCTAAATCAGTTATGCGTGCCCGTGAAGGACCCCGTCTACCCCACAATCATCATTTTGTCCAAAGGTATTATACAAAATGATTATGAGGCATGAAATCATAAAATTCGGGTAGTTGGGAGGTGACTGGTATGCAGTAAGTTATACAAAAACTTGTTTTTCGTATGATTTTAGGATATTTAAATCCATTTTCAGGAGTCTGAAGCTCGGTAGTCAGGGTTCCGATCTGTTTGAAAATTATGGAGGGTGTAAAATAGACCTTGATGGAAAACTTAGCAGTCATAAGTTTTACAAAAATTCCTAGTTTTTCAACTATT</canonical>
            <polymorphic>TGCGCCGAGTGGTAGTACGAGTTGTATATCGTTCGGTATCGCTCCATTCCAGCGGTATCCCACAGTTCTAATCGGATCTGCAATCAATTCGAAAATAATTGCTGACCAGAAAGATGGTTATCAGTGTGATTCATTTGTGTGGGAGTTTCTGATAAGAGACACCAAAAAATAGAGTGTTCAAAACTCCAAATTAAAAATCAATGTCTATTTTCTCAAAACGATATTTTTTCGATATTTGCCAAAGATTGGAACAGGAGAGGAAATCCTACATACACACAAAGGGTAAAGCAAACAAAAAAGGTTACCTTATCCCGTCCCAGTTTGATAGTTTTCAATTTGAAATCCACGCCTAGTGTACTAATGTGATCCATTCTGAAGTTGTTCTCGGCGAACCTCAGAAGAATGCATGATTTGCCGCAATTGTGATCCCCAACGACAACTATCTGTAATTGATTGGAATTGGTTGGACTAGGTTTGATTGATTAGAAGTCATTTTCTARATTATTCCCTCACTGATCAAGTTTCAAGGTACCAAACTTGTACCAAACTTGGAAAATAGACTTCTTTCTCCTTAAAAACATATGCCCCTTGGGACAACTCGTTCCTAACTCCTAGCATAATTTGTTCATATATTTTCTACACCAGCAAACACACCAGCCGTCCATAAATTGTTTTCACTACTGTGTCTAAATCAGTTATGCGTGCCCGTGAAGGACCCCGTCTACCCCACAATCATCATTTTGTCCAAAGGTATTATACAAAATGATTATGAGGCATGAAATCATAAAATTCGGGTAGTTGGGAGGTGACTGGTATGCAGTAAGTTATACAAAAACTTGTTTTTCGTATGATTTTAGGATATTTAAATCCATTTTCAGGAGTCTGAAGCTCGGTAGTCAGGGTTCCGATCTGTTTGAAAATTATGGAGGGTGTAAAATAGACCTTGATGGAAAACTTAGCAGTCATAAGTTTTACAAAAATTCCTAGTTTTTCAACTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>372 350 119 115 28 16</canonical_bands>
                <polymorphic_bands>372 350 143 119 16</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>497 379 124</canonical_bands>
                <polymorphic_bands>876 124</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCCATTCTGAAGTTGTTCTC</pcr_primer_p1>
		<pcr_primer_p2>TAGGAGTTAGGAACGAGTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCCATTCTGAAGTTGTTCTCGGCGAACCTCAGAAGAATGCATGATTTGCCGCAATTGTGATCCCCAACGACAACTATCTGTAATTGATTGGAATTGGTTGGACTAGGTTTGATTGATTAGAAGTCATTTTCTAGATTATTCCCTCACTGATCAAGTTTCAAGGTACCAAACTTGTACCAAACTTGGAAAATAGACTTCTTTCTCCTTAAAAACATATGCCCCTTGGGACAACTCGTTCCTAACTCCTA</canonical_amplicon>
		<polymorphic_amplicon>GATCCATTCTGAAGTTGTTCTCGGCGAACCTCAGAAGAATGCATGATTTGCCGCAATTGTGATCCCCAACGACAACTATCTGTAATTGATTGGAATTGGTTGGACTAGGTTTGATTGATTAGAAGTCATTTTCTARATTATTCCCTCACTGATCAAGTTTCAAGGTACCAAACTTGTACCAAACTTGGAAAATAGACTTCTTTCTCCTTAAAAACATATGCCCCTTGGGACAACTCGTTCCTAACTCCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37973</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1255011</contig_pos>
        <strand>+</strand>
        <context>ACCAAACTTG[G/T]ACCAAACTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATTTTCTAGATTATTCCCTCACTGATCAAGTTTCAAGGTACCAAACTTG</left_flank>
        <right_flank>ACCAAACTTGGAAAATAGACTTCTTTCTCCTTAAAAACATATGCCCCTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCATTCCAGCGGTATCCCACAGTTCTAATCGGATCTGCAATCAATTCGAAAATAATTGCTGACCAGAAAGATGGTTATCAGTGTGATTCATTTGTGTGGGAGTTTCTGATAAGAGACACCAAAAAATAGAGTGTTCAAAACTCCAAATTAAAAATCAATGTCTATTTTCTCAAAACGATATTTTTTCGATATTTGCCAAAGATTGGAACAGGAGAGGAAATCCTACATACACACAAAGGGTAAAGCAAACAAAAAAGGTTACCTTATCCCGTCCCAGTTTGATAGTTTTCAATTTGAAATCCACGCCTAGTGTACTAATGTGATCCATTCTGAAGTTGTTCTCGGCGAACCTCAGAAGAATGCATGATTTGCCGCAATTGTGATCCCCAACGACAACTATCTGTAATTGATTGGAATTGGTTGGACTAGGTTTGATTGATTAGAAGTCATTTTCTAGATTATTCCCTCACTGATCAAGTTTCAAGGTACCAAACTTGTACCAAACTTGGAAAATAGACTTCTTTCTCCTTAAAAACATATGCCCCTTGGGACAACTCGTTCCTAACTCCTAGCATAATTTGTTCATATATTTTCTACACCAGCAAACACACCAGCCGTCCATAAATTGTTTTCACTACTGTGTCTAAATCAGTTATGCGTGCCCGTGAAGGACCCCGTCTACCCCACAATCATCATTTTGTCCAAAGGTATTATACAAAATGATTATGAGGCATGAAATCATAAAATTCGGGTAGTTGGGAGGTGACTGGTATGCAGTAAGTTATACAAAAACTTGTTTTTCGTATGATTTTAGGATATTTAAATCCATTTTCAGGAGTCTGAAGCTCGGTAGTCAGGGTTCCGATCTGTTTGAAAATTATGGAGGGTGTAAAATAGACCTTGATGGAAAACTTAGCAGTCATAAGTTTTACAAAAATTCCTAGTTTTTCAACTATTTGCAGATTTCTGAAGCACGCCTGTTTTTTCCCATTTAGCAC</canonical>
            <polymorphic>CTCCATTCCAGCGGTATCCCACAGTTCTAATCGGATCTGCAATCAATTCGAAAATAATTGCTGACCAGAAAGATGGTTATCAGTGTGATTCATTTGTGTGGGAGTTTCTGATAAGAGACACCAAAAAATAGAGTGTTCAAAACTCCAAATTAAAAATCAATGTCTATTTTCTCAAAACGATATTTTTTCGATATTTGCCAAAGATTGGAACAGGAGAGGAAATCCTACATACACACAAAGGGTAAAGCAAACAAAAAAGGTTACCTTATCCCGTCCCAGTTTGATAGTTTTCAATTTGAAATCCACGCCTAGTGTACTAATGTGATCCATTCTGAAGTTGTTCTCGGCGAACCTCAGAAGAATGCATGATTTGCCGCAATTGTGATCCCCAACGACAACTATCTGTAATTGATTGGAATTGGTTGGACTAGGTTTGATTGATTAGAAGTCATTTTCTAGATTATTCCCTCACTGATCAAGTTTCAAGGTACCAAACTTGKACCAAACTTGGAAAATAGACTTCTTTCTCCTTAAAAACATATGCCCCTTGGGACAACTCGTTCCTAACTCCTAGCATAATTTGTTCATATATTTTCTACACCAGCAAACACACCAGCCGTCCATAAATTGTTTTCACTACTGTGTCTAAATCAGTTATGCGTGCCCGTGAAGGACCCCGTCTACCCCACAATCATCATTTTGTCCAAAGGTATTATACAAAATGATTATGAGGCATGAAATCATAAAATTCGGGTAGTTGGGAGGTGACTGGTATGCAGTAAGTTATACAAAAACTTGTTTTTCGTATGATTTTAGGATATTTAAATCCATTTTCAGGAGTCTGAAGCTCGGTAGTCAGGGTTCCGATCTGTTTGAAAATTATGGAGGGTGTAAAATAGACCTTGATGGAAAACTTAGCAGTCATAAGTTTTACAAAAATTCCTAGTTTTTCAACTATTTGCAGATTTCTGAAGCACGCCTGTTTTTTCCCATTTAGCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 315 174 11</canonical_bands>
                <polymorphic_bands>511 315 174</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCCATTCTGAAGTTGTTCTC</pcr_primer_p1>
		<pcr_primer_p2>TAGGAGTTAGGAACGAGTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCCATTCTGAAGTTGTTCTCGGCGAACCTCAGAAGAATGCATGATTTGCCGCAATTGTGATCCCCAACGACAACTATCTGTAATTGATTGGAATTGGTTGGACTAGGTTTGATTGATTAGAAGTCATTTTCTAGATTATTCCCTCACTGATCAAGTTTCAAGGTACCAAACTTGTACCAAACTTGGAAAATAGACTTCTTTCTCCTTAAAAACATATGCCCCTTGGGACAACTCGTTCCTAACTCCTA</canonical_amplicon>
		<polymorphic_amplicon>GATCCATTCTGAAGTTGTTCTCGGCGAACCTCAGAAGAATGCATGATTTGCCGCAATTGTGATCCCCAACGACAACTATCTGTAATTGATTGGAATTGGTTGGACTAGGTTTGATTGATTAGAAGTCATTTTCTAGATTATTCCCTCACTGATCAAGTTTCAAGGTACCAAACTTGKACCAAACTTGGAAAATAGACTTCTTTCTCCTTAAAAACATATGCCCCTTGGGACAACTCGTTCCTAACTCCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37974</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1339194</contig_pos>
        <strand>+</strand>
        <context>TACTGAYGST[A/T]ACCTTGAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGATGCT</left_flank>
        <right_flank>ACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACATACCGTTTCCG</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACTACTAAGTGATGAACTTCAAAATGCAACTGTAGCTCGATTACTGTATTTTTCAAACAGTTTTCTCTGAGCCGCAAGTTGCCTAGACAGTCATGCCTGACTATTTCCAAAATCTCCGACTATTTTCACGCTAACCTGATCGTTACGTTTCAGTGTAGTCAAAAATTTGGGGCCGTGGAAGAGAAACGCCAGTGCTCACAGCCTAAGATCCCAAAACAAAAACTACCGTATGCAAAGGAATTCGAAAATGGAATAAATTAGGCTACGGTAGTTTTCGTGCTGAAAGTTTCCGCCACGACAACTAAAATTTACTTTCTATCCAGATAACTTTTAGGCCAGTCGAAAGTTATTTTTCGAATTGTAGGTAGAGAACACATGTGTTTTGAGTCAACGCGCGCGAGAACCTATCTACGAGGAGTTCGTTGGGGCGCAATTGCTGACAATGGGCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGATGCTAACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACATACCGTTTCCGACCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAGAAATGAGAAAATACGAAATGAAACGTTGAGAACCAACAGGTTGATAACATGGACGTAGTCTTCCAATGGCAAAAATAAGAGTCAATGAGGAGGGCAGCAAGAACAGCTCTCTGTTCTCCGTCGTCCATGTATTGGTGTCCACAACATAGACACTTCTTGTGTCTTCCCACTCTCTCCGGTCACCACACTATTTGTCGACTGTCTTTGCGAAGGTCTCGCGAGCGCACCACAGTCGATGACACACCCTGCGCTGGTCAGTTTGATGTCTGTGCCCTCCGAGGCCGCACATGCTATTAACTAAGGGTCCTGTCGATCTGCGCACTCGTTTGGGCCAAGGCCAGCACGCAGCCCATCCTACTTCGTCGAACCTGCATTCTAAAGGAGAGGAGAGAGAAGAAAAAAAGCGTTGA</canonical>
            <polymorphic>AAAACTACTAAGTGATGAACTTCAAAATGCAACTGTAGCTCGATTACTGTATTTTTCAAACAGTTTTCTCTGAGCCGCAAGTTGCCTAGACAGTCATGCCTGACTATTTCCAAAATCTCCGACTATTTTCACGCTAACCTGATCGTTACGTTTCAGTGTAGTCAAAAATTTGGGGCCGTGGAAGAGAAACGCCAGTGCTCACAGCCTAAGATCCCAAAACAAAAACTACCGTATGCAAAGGAATTCGAAAATGGAATAAATTAGGCTACGGTAGTTTTCGTGCTGAAAGTTTCCGCCACGACAACTAAAATTTACTTTCTATCCAGATAACTTTTAGGCCAGTCGAAAGTTATTTTTCGAATTGTAGGTAGAGAACACATGTGTTTTGAGTCAACGCGCGCGAGAACCTATCTACGAGGAGTTCGTTGGGGCGCAATTGCTGACAATGGGCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGATGCTWACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACATACCGTTTCCGACCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAGAAATGAGAAAATACGAAATGAAACGTTGAGAACCAACAGGTTGATAACATGGACGTAGTCTTCCAATGGCAAAAATAAGAGTCAATGAGGAGGGCAGCAAGAACAGCTCTCTGTTCTCCGTCGTCCATGTATTGGTGTCCACAACATAGACACTTCTTGTGTCTTCCCACTCTCTCCGGTCACCACACTATTTGTCGACTGTCTTTGCGAAGGTCTCGCGAGCGCACCACAGTCGATGACACACCCTGCGCTGGTCAGTTTGATGTCTGTGCCCTCCGAGGCCGCACATGCTATTAACTAAGGGTCCTGTCGATCTGCGCACTCGTTTGGGCCAAGGCCAGCACGCAGCCCATCCTACTTCGTCGAACCTGCATTCTAAAGGAGAGGAGAGAGAAGAAAAAAAGCGTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATTGTAGGTAGAGAACACAT</pcr_primer_p1>
		<pcr_primer_p2>TCGTATTTTCTCATTTCTATTGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGAATTGTAGGTAGAGAACACATGTGTTTTGAGTCAACGCGCGCGAGAACCTATCTACGAGGAGTTCGTTGGGGCGCAATTGCTGACAATGGGCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGATGCTAACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACATACCGTTTCCGACCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAGAAATGAGAAAATACGA</canonical_amplicon>
		<polymorphic_amplicon>CGAATTGTAGGTAGAGAACACATGTGTTTTGAGTCAACGCGCGCGAGAACCTATCTACGAGGAGTTCGTTGGGGCGCAATTGCTGACAATGGGCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGATGCTWACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACATACCGTTTCCGACCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAGAAATGAGAAAATACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37975</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1339242</contig_pos>
        <strand>+</strand>
        <context>CAYACCGTTT[C/T]CGWCCTTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACATACCGTTT</left_flank>
        <right_flank>CGACCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAGAAATGAGA</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATTTTTCAAACAGTTTTCTCTGAGCCGCAAGTTGCCTAGACAGTCATGCCTGACTATTTCCAAAATCTCCGACTATTTTCACGCTAACCTGATCGTTACGTTTCAGTGTAGTCAAAAATTTGGGGCCGTGGAAGAGAAACGCCAGTGCTCACAGCCTAAGATCCCAAAACAAAAACTACCGTATGCAAAGGAATTCGAAAATGGAATAAATTAGGCTACGGTAGTTTTCGTGCTGAAAGTTTCCGCCACGACAACTAAAATTTACTTTCTATCCAGATAACTTTTAGGCCAGTCGAAAGTTATTTTTCGAATTGTAGGTAGAGAACACATGTGTTTTGAGTCAACGCGCGCGAGAACCTATCTACGAGGAGTTCGTTGGGGCGCAATTGCTGACAATGGGCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGATGCTAACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACATACCGTTTCCGACCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAGAAATGAGAAAATACGAAATGAAACGTTGAGAACCAACAGGTTGATAACATGGACGTAGTCTTCCAATGGCAAAAATAAGAGTCAATGAGGAGGGCAGCAAGAACAGCTCTCTGTTCTCCGTCGTCCATGTATTGGTGTCCACAACATAGACACTTCTTGTGTCTTCCCACTCTCTCCGGTCACCACACTATTTGTCGACTGTCTTTGCGAAGGTCTCGCGAGCGCACCACAGTCGATGACACACCCTGCGCTGGTCAGTTTGATGTCTGTGCCCTCCGAGGCCGCACATGCTATTAACTAAGGGTCCTGTCGATCTGCGCACTCGTTTGGGCCAAGGCCAGCACGCAGCCCATCCTACTTCGTCGAACCTGCATTCTAAAGGAGAGGAGAGAGAAGAAAAAAAGCGTTGACACAAGAAGAAAGAGAGAAGAAAGAGGAGGCAGTGTTTGGGACGTTGT</canonical>
            <polymorphic>GTATTTTTCAAACAGTTTTCTCTGAGCCGCAAGTTGCCTAGACAGTCATGCCTGACTATTTCCAAAATCTCCGACTATTTTCACGCTAACCTGATCGTTACGTTTCAGTGTAGTCAAAAATTTGGGGCCGTGGAAGAGAAACGCCAGTGCTCACAGCCTAAGATCCCAAAACAAAAACTACCGTATGCAAAGGAATTCGAAAATGGAATAAATTAGGCTACGGTAGTTTTCGTGCTGAAAGTTTCCGCCACGACAACTAAAATTTACTTTCTATCCAGATAACTTTTAGGCCAGTCGAAAGTTATTTTTCGAATTGTAGGTAGAGAACACATGTGTTTTGAGTCAACGCGCGCGAGAACCTATCTACGAGGAGTTCGTTGGGGCGCAATTGCTGACAATGGGCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGATGCTAACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACATACCGTTTYCGACCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAGAAATGAGAAAATACGAAATGAAACGTTGAGAACCAACAGGTTGATAACATGGACGTAGTCTTCCAATGGCAAAAATAAGAGTCAATGAGGAGGGCAGCAAGAACAGCTCTCTGTTCTCCGTCGTCCATGTATTGGTGTCCACAACATAGACACTTCTTGTGTCTTCCCACTCTCTCCGGTCACCACACTATTTGTCGACTGTCTTTGCGAAGGTCTCGCGAGCGCACCACAGTCGATGACACACCCTGCGCTGGTCAGTTTGATGTCTGTGCCCTCCGAGGCCGCACATGCTATTAACTAAGGGTCCTGTCGATCTGCGCACTCGTTTGGGCCAAGGCCAGCACGCAGCCCATCCTACTTCGTCGAACCTGCATTCTAAAGGAGAGGAGAGAGAAGAAAAAAAGCGTTGACACAAGAAGAAAGAGAGAAGAAAGAGGAGGCAGTGTTTGGGACGTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>357 318 181 54 49 23 18</canonical_bands>
                <polymorphic_bands>357 336 181 54 49 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAATTGTAGGTAGAGAACACAT</pcr_primer_p1>
		<pcr_primer_p2>TCGTATTTTCTCATTTCTATTGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGAATTGTAGGTAGAGAACACATGTGTTTTGAGTCAACGCGCGCGAGAACCTATCTACGAGGAGTTCGTTGGGGCGCAATTGCTGACAATGGGCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGATGCTAACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACATACCGTTTCCGACCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAGAAATGAGAAAATACGA</canonical_amplicon>
		<polymorphic_amplicon>CGAATTGTAGGTAGAGAACACATGTGTTTTGAGTCAACGCGCGCGAGAACCTATCTACGAGGAGTTCGTTGGGGCGCAATTGCTGACAATGGGCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGATGCTAACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACATACCGTTTYCGACCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAGAAATGAGAAAATACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37976</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1339245</contig_pos>
        <strand>+</strand>
        <context>ACCGTTTYCG[A/T]CCTTTTCAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACATACCGTTTCCG</left_flank>
        <right_flank>CCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAGAAATGAGAAAA</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTCAAACAGTTTTCTCTGAGCCGCAAGTTGCCTAGACAGTCATGCCTGACTATTTCCAAAATCTCCGACTATTTTCACGCTAACCTGATCGTTACGTTTCAGTGTAGTCAAAAATTTGGGGCCGTGGAAGAGAAACGCCAGTGCTCACAGCCTAAGATCCCAAAACAAAAACTACCGTATGCAAAGGAATTCGAAAATGGAATAAATTAGGCTACGGTAGTTTTCGTGCTGAAAGTTTCCGCCACGACAACTAAAATTTACTTTCTATCCAGATAACTTTTAGGCCAGTCGAAAGTTATTTTTCGAATTGTAGGTAGAGAACACATGTGTTTTGAGTCAACGCGCGCGAGAACCTATCTACGAGGAGTTCGTTGGGGCGCAATTGCTGACAATGGGCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGATGCTAACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACATACCGTTTCCGACCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAGAAATGAGAAAATACGAAATGAAACGTTGAGAACCAACAGGTTGATAACATGGACGTAGTCTTCCAATGGCAAAAATAAGAGTCAATGAGGAGGGCAGCAAGAACAGCTCTCTGTTCTCCGTCGTCCATGTATTGGTGTCCACAACATAGACACTTCTTGTGTCTTCCCACTCTCTCCGGTCACCACACTATTTGTCGACTGTCTTTGCGAAGGTCTCGCGAGCGCACCACAGTCGATGACACACCCTGCGCTGGTCAGTTTGATGTCTGTGCCCTCCGAGGCCGCACATGCTATTAACTAAGGGTCCTGTCGATCTGCGCACTCGTTTGGGCCAAGGCCAGCACGCAGCCCATCCTACTTCGTCGAACCTGCATTCTAAAGGAGAGGAGAGAGAAGAAAAAAAGCGTTGACACAAGAAGAAAGAGAGAAGAAAGAGGAGGCAGTGTTTGGGACGTTGTTAC</canonical>
            <polymorphic>TTTTTCAAACAGTTTTCTCTGAGCCGCAAGTTGCCTAGACAGTCATGCCTGACTATTTCCAAAATCTCCGACTATTTTCACGCTAACCTGATCGTTACGTTTCAGTGTAGTCAAAAATTTGGGGCCGTGGAAGAGAAACGCCAGTGCTCACAGCCTAAGATCCCAAAACAAAAACTACCGTATGCAAAGGAATTCGAAAATGGAATAAATTAGGCTACGGTAGTTTTCGTGCTGAAAGTTTCCGCCACGACAACTAAAATTTACTTTCTATCCAGATAACTTTTAGGCCAGTCGAAAGTTATTTTTCGAATTGTAGGTAGAGAACACATGTGTTTTGAGTCAACGCGCGCGAGAACCTATCTACGAGGAGTTCGTTGGGGCGCAATTGCTGACAATGGGCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGATGCTAACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACATACCGTTTCCGWCCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAGAAATGAGAAAATACGAAATGAAACGTTGAGAACCAACAGGTTGATAACATGGACGTAGTCTTCCAATGGCAAAAATAAGAGTCAATGAGGAGGGCAGCAAGAACAGCTCTCTGTTCTCCGTCGTCCATGTATTGGTGTCCACAACATAGACACTTCTTGTGTCTTCCCACTCTCTCCGGTCACCACACTATTTGTCGACTGTCTTTGCGAAGGTCTCGCGAGCGCACCACAGTCGATGACACACCCTGCGCTGGTCAGTTTGATGTCTGTGCCCTCCGAGGCCGCACATGCTATTAACTAAGGGTCCTGTCGATCTGCGCACTCGTTTGGGCCAAGGCCAGCACGCAGCCCATCCTACTTCGTCGAACCTGCATTCTAAAGGAGAGGAGAGAGAAGAAAAAAAGCGTTGACACAAGAAGAAAGAGAGAAGAAAGAGGAGGCAGTGTTTGGGACGTTGTTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>357 318 184 54 49 20 18</canonical_bands>
                <polymorphic_bands>357 336 184 54 49 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAATTGTAGGTAGAGAACACAT</pcr_primer_p1>
		<pcr_primer_p2>TCGTATTTTCTCATTTCTATTGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGAATTGTAGGTAGAGAACACATGTGTTTTGAGTCAACGCGCGCGAGAACCTATCTACGAGGAGTTCGTTGGGGCGCAATTGCTGACAATGGGCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGATGCTAACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACATACCGTTTCCGACCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAGAAATGAGAAAATACGA</canonical_amplicon>
		<polymorphic_amplicon>CGAATTGTAGGTAGAGAACACATGTGTTTTGAGTCAACGCGCGCGAGAACCTATCTACGAGGAGTTCGTTGGGGCGCAATTGCTGACAATGGGCTTGGGACTTTCAATATCAATGTATCGGAGATTCATTGATACTGATGCTAACCTTGAAATTTATCAAAAAGTAGTTCCTCTGAGAAACATACCGTTTCCGWCCTTTTCAGTTGATAGAAAAGAGAGAAATCAGTCAATAGAAATGAGAAAATACGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37977</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1340714</contig_pos>
        <strand>+</strand>
        <context>AATACCCCGG[G/T]CCTTTTGGKC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGG</left_flank>
        <right_flank>CCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGTCAGTGGACATAATTCTGATATTTTCCATAGAAATTGAGATAATTGAGCTCAAATTTCATAGTGTAACGCCCCTCCGTTATACGGTAGCTAAAAATTCAAAAAGTTGACAGCTGAAAAACACTAAGAATTGGCATACTGTAAAATTAGAGCTAATTTTCTTTACGATATTTGTCAGAATTCATGCCATAATTTCAGTTAATTTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTAC</canonical>
            <polymorphic>TTTTGTCAGTGGACATAATTCTGATATTTTCCATAGAAATTGAGATAATTGAGCTCAAATTTCATAGTGTAACGCCCCTCCGTTATACGGTAGCTAAAAATTCAAAAAGTTGACAGCTGAAAAACACTAAGAATTGGCATACTGTAAAATTAGAGCTAATTTTCTTTACGATATTTGTCAGAATTCATGCCATAATTTCAGTTAATTTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGKCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>498 386 107 9</canonical_bands>
                <polymorphic_bands>507 386 107</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATATGAACAGTTGTGAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCGAGTTTTCTCATATCTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGA</canonical_amplicon>
		<polymorphic_amplicon>CCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGKCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37978</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1340723</contig_pos>
        <strand>+</strand>
        <context>GKCCTTTTGG[G/T]CCGRSRTKAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGG</left_flank>
        <right_flank>CCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGACATAATTCTGATATTTTCCATAGAAATTGAGATAATTGAGCTCAAATTTCATAGTGTAACGCCCCTCCGTTATACGGTAGCTAAAAATTCAAAAAGTTGACAGCTGAAAAACACTAAGAATTGGCATACTGTAAAATTAGAGCTAATTTTCTTTACGATATTTGTCAGAATTCATGCCATAATTTCAGTTAATTTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTACTACAAGGCT</canonical>
            <polymorphic>TGGACATAATTCTGATATTTTCCATAGAAATTGAGATAATTGAGCTCAAATTTCATAGTGTAACGCCCCTCCGTTATACGGTAGCTAAAAATTCAAAAAGTTGACAGCTGAAAAACACTAAGAATTGGCATACTGTAAAATTAGAGCTAATTTTCTTTACGATATTTGTCAGAATTCATGCCATAATTTCAGTTAATTTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGKCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTACTACAAGGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>489 395 107 9</canonical_bands>
                <polymorphic_bands>489 395 116</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATATGAACAGTTGTGAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCGAGTTTTCTCATATCTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGA</canonical_amplicon>
		<polymorphic_amplicon>CCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGKCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37979</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1340727</contig_pos>
        <strand>+</strand>
        <context>TTTTGGKCCG[A/G]SRTKATGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCG</left_flank>
        <right_flank>CATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATAATTCTGATATTTTCCATAGAAATTGAGATAATTGAGCTCAAATTTCATAGTGTAACGCCCCTCCGTTATACGGTAGCTAAAAATTCAAAAAGTTGACAGCTGAAAAACACTAAGAATTGGCATACTGTAAAATTAGAGCTAATTTTCTTTACGATATTTGTCAGAATTCATGCCATAATTTCAGTTAATTTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTACTACAAGGCTAGAA</canonical>
            <polymorphic>CATAATTCTGATATTTTCCATAGAAATTGAGATAATTGAGCTCAAATTTCATAGTGTAACGCCCCTCCGTTATACGGTAGCTAAAAATTCAAAAAGTTGACAGCTGAAAAACACTAAGAATTGGCATACTGTAAAATTAGAGCTAATTTTCTTTACGATATTTGTCAGAATTCATGCCATAATTTCAGTTAATTTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGRCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTACTACAAGGCTAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>469 368 120 15 14 14</canonical_bands>
                <polymorphic_bands>469 368 120 29 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATATGAACAGTTGTGAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCGAGTTTTCTCATATCTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGA</canonical_amplicon>
		<polymorphic_amplicon>CCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGRCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37980</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1340728</contig_pos>
        <strand>+</strand>
        <context>TTTGGKCCGR[C/G]RTKATGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGG</left_flank>
        <right_flank>ATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAATTCTGATATTTTCCATAGAAATTGAGATAATTGAGCTCAAATTTCATAGTGTAACGCCCCTCCGTTATACGGTAGCTAAAAATTCAAAAAGTTGACAGCTGAAAAACACTAAGAATTGGCATACTGTAAAATTAGAGCTAATTTTCTTTACGATATTTGTCAGAATTCATGCCATAATTTCAGTTAATTTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTACTACAAGGCTAGAAC</canonical>
            <polymorphic>ATAATTCTGATATTTTCCATAGAAATTGAGATAATTGAGCTCAAATTTCATAGTGTAACGCCCCTCCGTTATACGGTAGCTAAAAATTCAAAAAGTTGACAGCTGAAAAACACTAAGAATTGGCATACTGTAAAATTAGAGCTAATTTTCTTTACGATATTTGTCAGAATTCATGCCATAATTTCAGTTAATTTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGSATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTACTACAAGGCTAGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATATGAACAGTTGTGAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCGAGTTTTCTCATATCTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGA</canonical_amplicon>
		<polymorphic_amplicon>CCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGSATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37981</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1340729</contig_pos>
        <strand>+</strand>
        <context>TTGGKCCGRS[A/G]TKATGAAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGC</left_flank>
        <right_flank>TTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTCTGATATTTTCCATAGAAATTGAGATAATTGAGCTCAAATTTCATAGTGTAACGCCCCTCCGTTATACGGTAGCTAAAAATTCAAAAAGTTGACAGCTGAAAAACACTAAGAATTGGCATACTGTAAAATTAGAGCTAATTTTCTTTACGATATTTGTCAGAATTCATGCCATAATTTCAGTTAATTTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTACTACAAGGCTAGAACG</canonical>
            <polymorphic>TAATTCTGATATTTTCCATAGAAATTGAGATAATTGAGCTCAAATTTCATAGTGTAACGCCCCTCCGTTATACGGTAGCTAAAAATTCAAAAAGTTGACAGCTGAAAAACACTAAGAATTGGCATACTGTAAAATTAGAGCTAATTTTCTTTACGATATTTGTCAGAATTCATGCCATAATTTCAGTTAATTTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCRTTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTACTACAAGGCTAGAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATATGAACAGTTGTGAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCGAGTTTTCTCATATCTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGA</canonical_amplicon>
		<polymorphic_amplicon>CCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCRTTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37982</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1340731</contig_pos>
        <strand>+</strand>
        <context>GGKCCGRSRT[G/T]ATGAAAACSG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCAT</left_flank>
        <right_flank>ATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTGATATTTTCCATAGAAATTGAGATAATTGAGCTCAAATTTCATAGTGTAACGCCCCTCCGTTATACGGTAGCTAAAAATTCAAAAAGTTGACAGCTGAAAAACACTAAGAATTGGCATACTGTAAAATTAGAGCTAATTTTCTTTACGATATTTGTCAGAATTCATGCCATAATTTCAGTTAATTTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTACTACAAGGCTAGAACGAT</canonical>
            <polymorphic>ATTCTGATATTTTCCATAGAAATTGAGATAATTGAGCTCAAATTTCATAGTGTAACGCCCCTCCGTTATACGGTAGCTAAAAATTCAAAAAGTTGACAGCTGAAAAACACTAAGAATTGGCATACTGTAAAATTAGAGCTAATTTTCTTTACGATATTTGTCAGAATTCATGCCATAATTTCAGTTAATTTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATKATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTACTACAAGGCTAGAACGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATATGAACAGTTGTGAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCGAGTTTTCTCATATCTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGA</canonical_amplicon>
		<polymorphic_amplicon>CCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATKATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37983</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1340740</contig_pos>
        <strand>+</strand>
        <context>TKATGAAAAC[C/G]GGKKATCAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAAC</left_flank>
        <right_flank>GGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCCATAGAAATTGAGATAATTGAGCTCAAATTTCATAGTGTAACGCCCCTCCGTTATACGGTAGCTAAAAATTCAAAAAGTTGACAGCTGAAAAACACTAAGAATTGGCATACTGTAAAATTAGAGCTAATTTTCTTTACGATATTTGTCAGAATTCATGCCATAATTTCAGTTAATTTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTACTACAAGGCTAGAACGATAGCACCCGT</canonical>
            <polymorphic>TTTTCCATAGAAATTGAGATAATTGAGCTCAAATTTCATAGTGTAACGCCCCTCCGTTATACGGTAGCTAAAAATTCAAAAAGTTGACAGCTGAAAAACACTAAGAATTGGCATACTGTAAAATTAGAGCTAATTTTCTTTACGATATTTGTCAGAATTCATGCCATAATTTCAGTTAATTTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACSGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTACTACAAGGCTAGAACGATAGCACCCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACCGGT</site>
                <isoschizomers>
                    <enzyme>AgeI</enzyme>
                    <enzyme>AsiAI</enzyme>
                    <enzyme>BshTI</enzyme>
                    <enzyme>CspAI</enzyme>
                    <enzyme>PinAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>502 455 43</canonical_bands>
                <polymorphic_bands>545 455</polymorphic_bands>
            </assay>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>498 368 134</canonical_bands>
                <polymorphic_bands>866 134</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>456 368 133 15 14 14</canonical_bands>
                <polymorphic_bands>456 383 133 14 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATATGAACAGTTGTGAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCGAGTTTTCTCATATCTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGA</canonical_amplicon>
		<polymorphic_amplicon>CCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACSGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37984</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1340743</contig_pos>
        <strand>+</strand>
        <context>TGAAAACSGG[G/T]KATCAGCTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGG</left_flank>
        <right_flank>TATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCATAGAAATTGAGATAATTGAGCTCAAATTTCATAGTGTAACGCCCCTCCGTTATACGGTAGCTAAAAATTCAAAAAGTTGACAGCTGAAAAACACTAAGAATTGGCATACTGTAAAATTAGAGCTAATTTTCTTTACGATATTTGTCAGAATTCATGCCATAATTTCAGTTAATTTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTACTACAAGGCTAGAACGATAGCACCCGTTGC</canonical>
            <polymorphic>TCCATAGAAATTGAGATAATTGAGCTCAAATTTCATAGTGTAACGCCCCTCCGTTATACGGTAGCTAAAAATTCAAAAAGTTGACAGCTGAAAAACACTAAGAATTGGCATACTGTAAAATTAGAGCTAATTTTCTTTACGATATTTGTCAGAATTCATGCCATAATTTCAGTTAATTTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGKTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTACTACAAGGCTAGAACGATAGCACCCGTTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACCGGT</site>
                <isoschizomers>
                    <enzyme>AgeI</enzyme>
                    <enzyme>AsiAI</enzyme>
                    <enzyme>BshTI</enzyme>
                    <enzyme>CspAI</enzyme>
                    <enzyme>PinAI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>505 452 43</canonical_bands>
                <polymorphic_bands>548 452</polymorphic_bands>
            </assay>
            <assay>
                <site>RCCGGY</site>
                <isoschizomers>
                    <enzyme>Bse118I</enzyme>
                    <enzyme>BsrFI</enzyme>
                    <enzyme>BssAI</enzyme>
                    <enzyme>Cfr10I</enzyme>
                </isoschizomers>
                <canonical_bands>495 368 137</canonical_bands>
                <polymorphic_bands>863 137</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATATGAACAGTTGTGAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCGAGTTTTCTCATATCTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGA</canonical_amplicon>
		<polymorphic_amplicon>CCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGKTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37985</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1340744</contig_pos>
        <strand>+</strand>
        <context>GAAAACSGGK[G/T]ATCAGCTAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGT</left_flank>
        <right_flank>ATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATAGAAATTGAGATAATTGAGCTCAAATTTCATAGTGTAACGCCCCTCCGTTATACGGTAGCTAAAAATTCAAAAAGTTGACAGCTGAAAAACACTAAGAATTGGCATACTGTAAAATTAGAGCTAATTTTCTTTACGATATTTGTCAGAATTCATGCCATAATTTCAGTTAATTTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTACTACAAGGCTAGAACGATAGCACCCGTTGCT</canonical>
            <polymorphic>CCATAGAAATTGAGATAATTGAGCTCAAATTTCATAGTGTAACGCCCCTCCGTTATACGGTAGCTAAAAATTCAAAAAGTTGACAGCTGAAAAACACTAAGAATTGGCATACTGTAAAATTAGAGCTAATTTTCTTTACGATATTTGTCAGAATTCATGCCATAATTTCAGTTAATTTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTKATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTACTACAAGGCTAGAACGATAGCACCCGTTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATATGAACAGTTGTGAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCGAGTTTTCTCATATCTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGA</canonical_amplicon>
		<polymorphic_amplicon>CCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTKATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37986</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1340811</contig_pos>
        <strand>+</strand>
        <context>TCCCAATTGT[C/T]CAAAAAGCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGT</left_flank>
        <right_flank>CAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTCAAAAAGTTGACAGCTGAAAAACACTAAGAATTGGCATACTGTAAAATTAGAGCTAATTTTCTTTACGATATTTGTCAGAATTCATGCCATAATTTCAGTTAATTTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTACTACAAGGCTAGAACGATAGCACCCGTTGCTAATCCTGGGGTACGTTTCCTCCTTATTTTGCAGAAAAATTCACAGTTTGGATTTTAGGAAGAAGGTG</canonical>
            <polymorphic>AAATTCAAAAAGTTGACAGCTGAAAAACACTAAGAATTGGCATACTGTAAAATTAGAGCTAATTTTCTTTACGATATTTGTCAGAATTCATGCCATAATTTCAGTTAATTTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTYCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTACTACAAGGCTAGAACGATAGCACCCGTTGCTAATCCTGGGGTACGTTTCCTCCTTATTTTGCAGAAAAATTCACAGTTTGGATTTTAGGAAGAAGGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATATGAACAGTTGTGAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCGAGTTTTCTCATATCTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGA</canonical_amplicon>
		<polymorphic_amplicon>CCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTYCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37987</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1340907</contig_pos>
        <strand>+</strand>
        <context>GAAAACTCGA[C/T]GAGAMCTGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGA</left_flank>
        <right_flank>GAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTCAGTTAATTTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTACTACAAGGCTAGAACGATAGCACCCGTTGCTAATCCTGGGGTACGTTTCCTCCTTATTTTGCAGAAAAATTCACAGTTTGGATTTTAGGAAGAAGGTGATGAATTTTGCGACAAATGCAACTACTGGAAAAGCGACAGAACACATCATTGCTCAGTGTGCGAGCGGTGTATATATGGCATGGACCATCATTGCA</canonical>
            <polymorphic>AATTTCAGTTAATTTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGAYGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTACTACAAGGCTAGAACGATAGCACCCGTTGCTAATCCTGGGGTACGTTTCCTCCTTATTTTGCAGAAAAATTCACAGTTTGGATTTTAGGAAGAAGGTGATGAATTTTGCGACAAATGCAACTACTGGAAAAGCGACAGAACACATCATTGCTCAGTGTGCGAGCGGTGTATATATGGCATGGACCATCATTGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGAGCTGACAAAGAGATTC</pcr_primer_p1>
		<pcr_primer_p2>ATCCTGGTTTGTATCTGAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>317</pcr_amplicon_size>
		<canonical_amplicon>TCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGAT</canonical_amplicon>
		<polymorphic_amplicon>TCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGAYGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37988</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1340912</contig_pos>
        <strand>+</strand>
        <context>CTCGAYGAGA[A/C]CTGTAAGRtg</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGA</left_flank>
        <right_flank>CTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTTAATTTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTACTACAAGGCTAGAACGATAGCACCCGTTGCTAATCCTGGGGTACGTTTCCTCCTTATTTTGCAGAAAAATTCACAGTTTGGATTTTAGGAAGAAGGTGATGAATTTTGCGACAAATGCAACTACTGGAAAAGCGACAGAACACATCATTGCTCAGTGTGCGAGCGGTGTATATATGGCATGGACCATCATTGCATTTGG</canonical>
            <polymorphic>CAGTTAATTTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGAMCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTACTACAAGGCTAGAACGATAGCACCCGTTGCTAATCCTGGGGTACGTTTCCTCCTTATTTTGCAGAAAAATTCACAGTTTGGATTTTAGGAAGAAGGTGATGAATTTTGCGACAAATGCAACTACTGGAAAAGCGACAGAACACATCATTGCTCAGTGTGCGAGCGGTGTATATATGGCATGGACCATCATTGCATTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGAGCTGACAAAGAGATTC</pcr_primer_p1>
		<pcr_primer_p2>ATCCTGGTTTGTATCTGAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>317</pcr_amplicon_size>
		<canonical_amplicon>TCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGAT</canonical_amplicon>
		<polymorphic_amplicon>TCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGAMCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37989</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1340920</contig_pos>
        <strand>+</strand>
        <context>GAMCTGTAAG[A/G]tgatacgact</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAG</left_flank>
        <right_flank>TGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTACTACAAGGCTAGAACGATAGCACCCGTTGCTAATCCTGGGGTACGTTTCCTCCTTATTTTGCAGAAAAATTCACAGTTTGGATTTTAGGAAGAAGGTGATGAATTTTGCGACAAATGCAACTACTGGAAAAGCGACAGAACACATCATTGCTCAGTGTGCGAGCGGTGTATATATGGCATGGACCATCATTGCATTTGGATTAATCA</canonical>
            <polymorphic>TTGAGAGAAATTATTACTGTATGAATAGAAAAAGTGTGAATAGAAAAACAGTGCAGAGAGTTGTGGTGAATGGGGGTTTTCAGAATTTCAACGAAAAATATTTAGAAATTAGCTGCGGAAAAATCAATTAACGAGTCTTAAACAAAAACTTCAGATCCGTCAAATTTTCAGTTCCTCGTCTTCTTCGTCTACTTCATCTCAGCACTTCTTGCCTTCACCTCATTTTTCATTATTATCCCATATGAACAGTTGTGAGTTTTTTGTTTCAAATAATTCCGGATACAATACCCCGGTCCTTTTGGTCCGGCATTATGAAAACCGGTTATCAGCTAAAAAATCGTGAGACTGTTTTTGCTAAGGTCTTGATAGCGCAAAAGAAGTCCCAATTGTCCAAAAAGCTTCATTTTGGTCCGAGTCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGRTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGATGGCTACTCATCACTCTAGGTGTCTTTGGAATATATTTTCTGATCAATATTCAATATCATTACTACAAGGCTAGAACGATAGCACCCGTTGCTAATCCTGGGGTACGTTTCCTCCTTATTTTGCAGAAAAATTCACAGTTTGGATTTTAGGAAGAAGGTGATGAATTTTGCGACAAATGCAACTACTGGAAAAGCGACAGAACACATCATTGCTCAGTGTGCGAGCGGTGTATATATGGCATGGACCATCATTGCATTTGGATTAATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>136 126 116 100 88 62 60 51 44 39 37 36 25 15 15 13 12 9 9 3 2 2</canonical_bands>
                <polymorphic_bands>186 136 116 100 88 62 51 44 39 37 36 25 15 15 13 12 9 9 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGAGCTGACAAAGAGATTC</pcr_primer_p1>
		<pcr_primer_p2>ATCCTGGTTTGTATCTGAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>317</pcr_amplicon_size>
		<canonical_amplicon>TCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGGTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGAT</canonical_amplicon>
		<polymorphic_amplicon>TCGAGCTGACAAAGAGATTCTTTTGTGCTCGAGAGGTTTTGAGCAATTAAAACAGATATGAGAAAACTCGACGAGACCTGTAAGRTGATACGACTTGATGACATTACGTTTGGTTACAAGCAAAAAAAACCGAAAAATGTAGGGTTGGTCTATATCTAGCTTTATAGCAGGTTAGTAGGCGAGATACAGTATCATCTTGTAGTTGTCTGAGTGTTCTGTTATATCTATCTTAGTTAGCCAAAGAAATATTGAGCTTGGCATAAGCTATGAGCCGGTAGGTTGTCAAAATTTGAAAACTTTCAGATACAAACCAGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37990</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1342449</contig_pos>
        <strand>+</strand>
        <context>TTTGGGGCTT[C/T]GACGGAATCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCGGCTCAACAAAGGCTTCAAATCCAACTGGAAGAACTTTTTGGGGCTT</left_flank>
        <right_flank>GACGGAATCGAACATTTTTCCGATGTGTTATAATACCAACTACATTCCCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATCTCTGTGAATGCTCTTATTTAAATTTCGGTCTGTTACACACCTTCCAAAAATATAGAAATGATCGGACACCTGACAGGCAAGCTCTAGGCTACTGAAAATCGTTGAAATGGCCAAGAATCAACTGAAAACTATTTTTTTTGACGATCTTATCGGACGGTGCTGTATGTTTTGGGTTACTGATTTGATATAGAATCTGAAAATATTCATTTCAATATTTCAAATTTTCAGGATTTGCGAGAACTGCAGTTGTCTTTTCTTATCTCCTCAGTGGCATCTTATTGGTTATGGTTGGCGGCCTTACTTTTTGGAACTTCTACTTGATATCCATTGGGTGCACATATATTGATTATTTGGTAGGTCAAATGAATTGAAACGCTTTTTCCTTCAAAAAAAAAATTTTCCAGAAACGAAGCGGAAACAAAAAAAAGCAGCAAACCCTGAGAAATCGGCTCAACAAAGGCTTCAAATCCAACTGGAAGAACTTTTTGGGGCTTCGACGGAATCGAACATTTTTCCGATGTGTTATAATACCAACTACATTCCCGCCGGTGATATTTGAGAATATTAATACGCGATACGATAACTTTGATATTGTATGATTTGAATTCTTGCCCATTTGCTCATCGTCAAGCTCACCCGAAAACTCTTGTGATCTGCTTAAGCTCCTGTTGGCATTTACGGTTATGTTGCATATTCTGCATCAACGAATTAGAACGCAAATTGATATATTTTCAATCCATAATAAAGAAAGACATACAATTCCTTGTTCGCGGCAGTTTGGTGAAAAACTAGATCAAAATAATTAATTTAAAACAAAATTGCATAAACCCGTAACACTTTCGTTAGCACCCTAAGACAGTAGATTGATACTCAGGGTTTCTTATTGCTCCAGAATTCGTCCAATGAGATTGCGGAGACGTTGTCTAGCACATTCATCACGGGTCGTTCGAATAGTTCCTTGTTTCGTCGAGTCCTTACAGTGCTGCCGCCTCTGT</canonical>
            <polymorphic>AAATCTCTGTGAATGCTCTTATTTAAATTTCGGTCTGTTACACACCTTCCAAAAATATAGAAATGATCGGACACCTGACAGGCAAGCTCTAGGCTACTGAAAATCGTTGAAATGGCCAAGAATCAACTGAAAACTATTTTTTTTGACGATCTTATCGGACGGTGCTGTATGTTTTGGGTTACTGATTTGATATAGAATCTGAAAATATTCATTTCAATATTTCAAATTTTCAGGATTTGCGAGAACTGCAGTTGTCTTTTCTTATCTCCTCAGTGGCATCTTATTGGTTATGGTTGGCGGCCTTACTTTTTGGAACTTCTACTTGATATCCATTGGGTGCACATATATTGATTATTTGGTAGGTCAAATGAATTGAAACGCTTTTTCCTTCAAAAAAAAAATTTTCCAGAAACGAAGCGGAAACAAAAAAAAGCAGCAAACCCTGAGAAATCGGCTCAACAAAGGCTTCAAATCCAACTGGAAGAACTTTTTGGGGCTTYGACGGAATCGAACATTTTTCCGATGTGTTATAATACCAACTACATTCCCGCCGGTGATATTTGAGAATATTAATACGCGATACGATAACTTTGATATTGTATGATTTGAATTCTTGCCCATTTGCTCATCGTCAAGCTCACCCGAAAACTCTTGTGATCTGCTTAAGCTCCTGTTGGCATTTACGGTTATGTTGCATATTCTGCATCAACGAATTAGAACGCAAATTGATATATTTTCAATCCATAATAAAGAAAGACATACAATTCCTTGTTCGCGGCAGTTTGGTGAAAAACTAGATCAAAATAATTAATTTAAAACAAAATTGCATAAACCCGTAACACTTTCGTTAGCACCCTAAGACAGTAGATTGATACTCAGGGTTTCTTATTGCTCCAGAATTCGTCCAATGAGATTGCGGAGACGTTGTCTAGCACATTCATCACGGGTCGTTCGAATAGTTCCTTGTTTCGTCGAGTCCTTACAGTGCTGCCGCCTCTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 444 27 20 9</canonical_bands>
                <polymorphic_bands>509 444 27 20</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>504 470 26</canonical_bands>
                <polymorphic_bands>974 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTAGGTCAAATGAATTGAAAC</pcr_primer_p1>
		<pcr_primer_p2>CAAATCATACAATATCAAAGTTATCG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGTAGGTCAAATGAATTGAAACGCTTTTTCCTTCAAAAAAAAAATTTTCCAGAAACGAAGCGGAAACAAAAAAAAGCAGCAAACCCTGAGAAATCGGCTCAACAAAGGCTTCAAATCCAACTGGAAGAACTTTTTGGGGCTTCGACGGAATCGAACATTTTTCCGATGTGTTATAATACCAACTACATTCCCGCCGGTGATATTTGAGAATATTAATACGCGATACGATAACTTTGATATTGTATGATTTG</canonical_amplicon>
		<polymorphic_amplicon>GGTAGGTCAAATGAATTGAAACGCTTTTTCCTTCAAAAAAAAAATTTTCCAGAAACGAAGCGGAAACAAAAAAAAGCAGCAAACCCTGAGAAATCGGCTCAACAAAGGCTTCAAATCCAACTGGAAGAACTTTTTGGGGCTTYGACGGAATCGAACATTTTTCCGATGTGTTATAATACCAACTACATTCCCGCCGGTGATATTTGAGAATATTAATACGCGATACGATAACTTTGATATTGTATGATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37991</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1342489</contig_pos>
        <strand>+</strand>
        <context>ATAATACCAA[C/T]TACATTSCCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGGGGCTTCGACGGAATCGAACATTTTTCCGATGTGTTATAATACCAA</left_flank>
        <right_flank>TACATTCCCGCCGGTGATATTTGAGAATATTAATACGCGATACGATAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACACCTTCCAAAAATATAGAAATGATCGGACACCTGACAGGCAAGCTCTAGGCTACTGAAAATCGTTGAAATGGCCAAGAATCAACTGAAAACTATTTTTTTTGACGATCTTATCGGACGGTGCTGTATGTTTTGGGTTACTGATTTGATATAGAATCTGAAAATATTCATTTCAATATTTCAAATTTTCAGGATTTGCGAGAACTGCAGTTGTCTTTTCTTATCTCCTCAGTGGCATCTTATTGGTTATGGTTGGCGGCCTTACTTTTTGGAACTTCTACTTGATATCCATTGGGTGCACATATATTGATTATTTGGTAGGTCAAATGAATTGAAACGCTTTTTCCTTCAAAAAAAAAATTTTCCAGAAACGAAGCGGAAACAAAAAAAAGCAGCAAACCCTGAGAAATCGGCTCAACAAAGGCTTCAAATCCAACTGGAAGAACTTTTTGGGGCTTCGACGGAATCGAACATTTTTCCGATGTGTTATAATACCAACTACATTCCCGCCGGTGATATTTGAGAATATTAATACGCGATACGATAACTTTGATATTGTATGATTTGAATTCTTGCCCATTTGCTCATCGTCAAGCTCACCCGAAAACTCTTGTGATCTGCTTAAGCTCCTGTTGGCATTTACGGTTATGTTGCATATTCTGCATCAACGAATTAGAACGCAAATTGATATATTTTCAATCCATAATAAAGAAAGACATACAATTCCTTGTTCGCGGCAGTTTGGTGAAAAACTAGATCAAAATAATTAATTTAAAACAAAATTGCATAAACCCGTAACACTTTCGTTAGCACCCTAAGACAGTAGATTGATACTCAGGGTTTCTTATTGCTCCAGAATTCGTCCAATGAGATTGCGGAGACGTTGTCTAGCACATTCATCACGGGTCGTTCGAATAGTTCCTTGTTTCGTCGAGTCCTTACAGTGCTGCCGCCTCTGTAAATCTCATAATTTGGATAATTTTCATTTATAGACTTGAA</canonical>
            <polymorphic>CACACCTTCCAAAAATATAGAAATGATCGGACACCTGACAGGCAAGCTCTAGGCTACTGAAAATCGTTGAAATGGCCAAGAATCAACTGAAAACTATTTTTTTTGACGATCTTATCGGACGGTGCTGTATGTTTTGGGTTACTGATTTGATATAGAATCTGAAAATATTCATTTCAATATTTCAAATTTTCAGGATTTGCGAGAACTGCAGTTGTCTTTTCTTATCTCCTCAGTGGCATCTTATTGGTTATGGTTGGCGGCCTTACTTTTTGGAACTTCTACTTGATATCCATTGGGTGCACATATATTGATTATTTGGTAGGTCAAATGAATTGAAACGCTTTTTCCTTCAAAAAAAAAATTTTCCAGAAACGAAGCGGAAACAAAAAAAAGCAGCAAACCCTGAGAAATCGGCTCAACAAAGGCTTCAAATCCAACTGGAAGAACTTTTTGGGGCTTCGACGGAATCGAACATTTTTCCGATGTGTTATAATACCAAYTACATTCCCGCCGGTGATATTTGAGAATATTAATACGCGATACGATAACTTTGATATTGTATGATTTGAATTCTTGCCCATTTGCTCATCGTCAAGCTCACCCGAAAACTCTTGTGATCTGCTTAAGCTCCTGTTGGCATTTACGGTTATGTTGCATATTCTGCATCAACGAATTAGAACGCAAATTGATATATTTTCAATCCATAATAAAGAAAGACATACAATTCCTTGTTCGCGGCAGTTTGGTGAAAAACTAGATCAAAATAATTAATTTAAAACAAAATTGCATAAACCCGTAACACTTTCGTTAGCACCCTAAGACAGTAGATTGATACTCAGGGTTTCTTATTGCTCCAGAATTCGTCCAATGAGATTGCGGAGACGTTGTCTAGCACATTCATCACGGGTCGTTCGAATAGTTCCTTGTTTCGTCGAGTCCTTACAGTGCTGCCGCCTCTGTAAATCTCATAATTTGGATAATTTTCATTTATAGACTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCCAACTGGAAGAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCTAATTCGTTGATGCAGAATA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATCCAACTGGAAGAACTTTTTGGGGCTTCGACGGAATCGAACATTTTTCCGATGTGTTATAATACCAACTACATTCCCGCCGGTGATATTTGAGAATATTAATACGCGATACGATAACTTTGATATTGTATGATTTGAATTCTTGCCCATTTGCTCATCGTCAAGCTCACCCGAAAACTCTTGTGATCTGCTTAAGCTCCTGTTGGCATTTACGGTTATGTTGCATATTCTGCATCAACGAATTAGA</canonical_amplicon>
		<polymorphic_amplicon>AAATCCAACTGGAAGAACTTTTTGGGGCTTCGACGGAATCGAACATTTTTCCGATGTGTTATAATACCAAYTACATTCCCGCCGGTGATATTTGAGAATATTAATACGCGATACGATAACTTTGATATTGTATGATTTGAATTCTTGCCCATTTGCTCATCGTCAAGCTCACCCGAAAACTCTTGTGATCTGCTTAAGCTCCTGTTGGCATTTACGGTTATGTTGCATATTCTGCATCAACGAATTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37992</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1342531</contig_pos>
        <strand>+</strand>
        <context>AATACGCGAT[A/C]CGATAACTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATACCAACTACATTCCCGCCGGTGATATTTGAGAATATTAATACGCGAT</left_flank>
        <right_flank>CGATAACTTTGATATTGTATGATTTGAATTCTTGCCCATTTGCTCATCGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGCTCTAGGCTACTGAAAATCGTTGAAATGGCCAAGAATCAACTGAAAACTATTTTTTTTGACGATCTTATCGGACGGTGCTGTATGTTTTGGGTTACTGATTTGATATAGAATCTGAAAATATTCATTTCAATATTTCAAATTTTCAGGATTTGCGAGAACTGCAGTTGTCTTTTCTTATCTCCTCAGTGGCATCTTATTGGTTATGGTTGGCGGCCTTACTTTTTGGAACTTCTACTTGATATCCATTGGGTGCACATATATTGATTATTTGGTAGGTCAAATGAATTGAAACGCTTTTTCCTTCAAAAAAAAAATTTTCCAGAAACGAAGCGGAAACAAAAAAAAGCAGCAAACCCTGAGAAATCGGCTCAACAAAGGCTTCAAATCCAACTGGAAGAACTTTTTGGGGCTTCGACGGAATCGAACATTTTTCCGATGTGTTATAATACCAACTACATTCCCGCCGGTGATATTTGAGAATATTAATACGCGATACGATAACTTTGATATTGTATGATTTGAATTCTTGCCCATTTGCTCATCGTCAAGCTCACCCGAAAACTCTTGTGATCTGCTTAAGCTCCTGTTGGCATTTACGGTTATGTTGCATATTCTGCATCAACGAATTAGAACGCAAATTGATATATTTTCAATCCATAATAAAGAAAGACATACAATTCCTTGTTCGCGGCAGTTTGGTGAAAAACTAGATCAAAATAATTAATTTAAAACAAAATTGCATAAACCCGTAACACTTTCGTTAGCACCCTAAGACAGTAGATTGATACTCAGGGTTTCTTATTGCTCCAGAATTCGTCCAATGAGATTGCGGAGACGTTGTCTAGCACATTCATCACGGGTCGTTCGAATAGTTCCTTGTTTCGTCGAGTCCTTACAGTGCTGCCGCCTCTGTAAATCTCATAATTTGGATAATTTTCATTTATAGACTTGAAAAACCTGGTATTGATACTATGGAACGTTCCTTCCCTGGTCGG</canonical>
            <polymorphic>CAAGCTCTAGGCTACTGAAAATCGTTGAAATGGCCAAGAATCAACTGAAAACTATTTTTTTTGACGATCTTATCGGACGGTGCTGTATGTTTTGGGTTACTGATTTGATATAGAATCTGAAAATATTCATTTCAATATTTCAAATTTTCAGGATTTGCGAGAACTGCAGTTGTCTTTTCTTATCTCCTCAGTGGCATCTTATTGGTTATGGTTGGCGGCCTTACTTTTTGGAACTTCTACTTGATATCCATTGGGTGCACATATATTGATTATTTGGTAGGTCAAATGAATTGAAACGCTTTTTCCTTCAAAAAAAAAATTTTCCAGAAACGAAGCGGAAACAAAAAAAAGCAGCAAACCCTGAGAAATCGGCTCAACAAAGGCTTCAAATCCAACTGGAAGAACTTTTTGGGGCTTCGACGGAATCGAACATTTTTCCGATGTGTTATAATACCAACTACATTCCCGCCGGTGATATTTGAGAATATTAATACGCGATMCGATAACTTTGATATTGTATGATTTGAATTCTTGCCCATTTGCTCATCGTCAAGCTCACCCGAAAACTCTTGTGATCTGCTTAAGCTCCTGTTGGCATTTACGGTTATGTTGCATATTCTGCATCAACGAATTAGAACGCAAATTGATATATTTTCAATCCATAATAAAGAAAGACATACAATTCCTTGTTCGCGGCAGTTTGGTGAAAAACTAGATCAAAATAATTAATTTAAAACAAAATTGCATAAACCCGTAACACTTTCGTTAGCACCCTAAGACAGTAGATTGATACTCAGGGTTTCTTATTGCTCCAGAATTCGTCCAATGAGATTGCGGAGACGTTGTCTAGCACATTCATCACGGGTCGTTCGAATAGTTCCTTGTTTCGTCGAGTCCTTACAGTGCTGCCGCCTCTGTAAATCTCATAATTTGGATAATTTTCATTTATAGACTTGAAAAACCTGGTATTGATACTATGGAACGTTCCTTCCCTGGTCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACATTTTTCCGATGTGTTAT</pcr_primer_p1>
		<pcr_primer_p2>TGTCTTTCTTTATTATGGATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAACATTTTTCCGATGTGTTATAATACCAACTACATTCCCGCCGGTGATATTTGAGAATATTAATACGCGATACGATAACTTTGATATTGTATGATTTGAATTCTTGCCCATTTGCTCATCGTCAAGCTCACCCGAAAACTCTTGTGATCTGCTTAAGCTCCTGTTGGCATTTACGGTTATGTTGCATATTCTGCATCAACGAATTAGAACGCAAATTGATATATTTTCAATCCATAATAAAGAAAGACA</canonical_amplicon>
		<polymorphic_amplicon>GAACATTTTTCCGATGTGTTATAATACCAACTACATTCCCGCCGGTGATATTTGAGAATATTAATACGCGATMCGATAACTTTGATATTGTATGATTTGAATTCTTGCCCATTTGCTCATCGTCAAGCTCACCCGAAAACTCTTGTGATCTGCTTAAGCTCCTGTTGGCATTTACGGTTATGTTGCATATTCTGCATCAACGAATTAGAACGCAAATTGATATATTTTCAATCCATAATAAAGAAAGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37993</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1358240</contig_pos>
        <strand></strand>
        <context>aatcatctct[G/A]ttactgtraa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTGAAATCTCAAGTAGAACGCCACTGTCAATTTTGAGCTCAATCATCTCT</left_flank>
        <right_flank>TTACTGTGAAACAAATCAAACTTTAGTTAACCGTTGAATTATTGGTGATA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAATAGGGAATGAACGAACGGTTTAGGATAAGCGATGACACTGTACATATTATCAGCCGCGATCCCGGCCTGCTGATTCACTCGCGGCGCCTTTTTGTCAAAAGTATGGGGTTGGACGACGCCGACGGGGGGACGAGAAGAATCAAATGAGAAGAAATGAGAGAAGAAGAAGAAGAAGAAGTGAAATACTGGGGCGGGAAAGAACAATCATTACTCATTACTCATCTATTCACTTTAATGTTTTTGGTGGGGTCTTTCTCTCTCGTTTTTTTCCCTTTTCTAGAAATCTGTTCTAATCACTTCTAATCAATCTTTGTCTCCTAGAGACTGGACGTTATGGATTTATATGGATCACATGCTTTCTTTGTCATCAACGATCAAATAATGCGAACGACGCTCTCAAGTAATCTATTGCAGCAATATTTAGCCAAGGAATGTTGTATACAGTGAAATCTCAAGTAGAACGCCACTGTCAATTTTGAGCTCAATCATCTCTGTTACTGTGAAACAAATCAAACTTTAGTTAACCGTTGAATTATTGGTGATACTATGATAAACGTTTTATCTGTTGACAAATTCTTTGGATCTCTGAGAGGAGCCAAGAAAAACAGCCTCAAAGTTAAAAGCTAGAGGTCTCCTATTACCGATGTAGCTGTATCTTTTTTCTTGTAATAGTAAACGCTACGTTTATGATAGATAGAGATTTTGTTATTTACTCAAACTAATGCGGCGGAGTCCTTTGTTTGTTGTTTACCGTAAAACCGATAATAGAAGCCAATAGTTAACTTTGAGTTCATTTATCTCATTTCCTGTCAAAGATATGGAGAAGTGGTCAACTAATAAATTGTTTATCATCGTTCCAGAAGTATGTTGTTCGTTAACAAATTTCTGATCTCTTTATCTGGAACCGAGATAAATTGTCCTCAAAGTTGAAAGTTGGGAGGCCTTTCTATTACAGGCCTTTCTATTATTTTCATTTCCGGAATTATCAAGCAAC</canonical>
            <polymorphic>AAAAAATAGGGAATGAACGAACGGTTTAGGATAAGCGATGACACTGTACATATTATCAGCCGCGATCCCGGCCTGCTGATTCACTCGCGGCGCCTTTTTGTCAAAAGTATGGGGTTGGACGACGCCGACGGGGGGACGAGAAGAATCAAATGAGAAGAAATGAGAGAAGAAGAAGAAGAAGAAGTGAAATACTGGGGCGGGAAAGAACAATCATTACTCATTACTCATCTATTCACTTTAATGTTTTTGGTGGGGTCTTTCTCTCTCGTTTTTTTCCCTTTTCTAGAAATCTGTTCTAATCACTTCTAATCAATCTTTGTCTCCTAGAGACTGGACGTTATGGATTTATATGGATCACATGCTTTCTTTGTCATCAACGATCAAATAATGCGAACGACGCTCTCAAGTAATCTATTGCAGCAATATTTAGCCAAGGAATGTTGTATACAGTGAAATCTCAAGTAGAACGCCACTGTCAATTTTGAGCTCAATCATCTCTRTTACTGTGAAACAAATCAAACTTTAGTTAACCGTTGAATTATTGGTGATACTATGATAAACGTTTTATCTGTTGACAAATTCTTTGGATCTCTGAGAGGAGCCAAGAAAAACAGCCTCAAAGTTAAAAGCTAGAGGTCTCCTATTACCGATGTAGCTGTATCTTTTTTCTTGTAATAGTAAACGCTACGTTTATGATAGATAGAGATTTTGTTATTTACTCAAACTAATGCGGCGGAGTCCTTTGTTTGTTGTTTACCGTAAAACCGATAATAGAAGCCAATAGTTAACTTTGAGTTCATTTATCTCATTTCCTGTCAAAGATATGGAGAAGTGGTCAACTAATAAATTGTTTATCATCGTTCCAGAAGTATGTTGTTCGTTAACAAATTTCTGATCTCTTTATCTGGAACCGAGATAAATTGTCCTCAAAGTTGAAAGTTGGGAGGCCTTTCTATTACAGGCCTTTCTATTATTTTCATTTCCGGAATTATCAAGCAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTTAGCCAAGGAATGTTGTAT</pcr_primer_p1>
		<pcr_primer_p2>ACGTAGCGTTTACTATTACAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>TATTTAGCCAAGGAATGTTGTATACAGTGAAATCTCAAGTAGAACGCCACTGTCAATTTTGAGCTCAATCATCTCTGTTACTGTGAAACAAATCAAACTTTAGTTAACCGTTGAATTATTGGTGATACTATGATAAACGTTTTATCTGTTGACAAATTCTTTGGATCTCTGAGAGGAGCCAAGAAAAACAGCCTCAAAGTTAAAAGCTAGAGGTCTCCTATTACCGATGTAGCTGTATCTTTTTTCTTGTAATAGTAAACGCTACGT</canonical_amplicon>
		<polymorphic_amplicon>TATTTAGCCAAGGAATGTTGTATACAGTGAAATCTCAAGTAGAACGCCACTGTCAATTTTGAGCTCAATCATCTCTRTTACTGTGAAACAAATCAAACTTTAGTTAACCGTTGAATTATTGGTGATACTATGATAAACGTTTTATCTGTTGACAAATTCTTTGGATCTCTGAGAGGAGCCAAGAAAAACAGCCTCAAAGTTAAAAGCTAGAGGTCTCCTATTACCGATGTAGCTGTATCTTTTTTCTTGTAATAGTAAACGCTACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37994</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1358248</contig_pos>
        <strand></strand>
        <context>ctrttactgt[G/A]aaacaaatca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCAAGTAGAACGCCACTGTCAATTTTGAGCTCAATCATCTCTGTTACTGT</left_flank>
        <right_flank>AAACAAATCAAACTTTAGTTAACCGTTGAATTATTGGTGATACTATGATA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGAATGAACGAACGGTTTAGGATAAGCGATGACACTGTACATATTATCAGCCGCGATCCCGGCCTGCTGATTCACTCGCGGCGCCTTTTTGTCAAAAGTATGGGGTTGGACGACGCCGACGGGGGGACGAGAAGAATCAAATGAGAAGAAATGAGAGAAGAAGAAGAAGAAGAAGTGAAATACTGGGGCGGGAAAGAACAATCATTACTCATTACTCATCTATTCACTTTAATGTTTTTGGTGGGGTCTTTCTCTCTCGTTTTTTTCCCTTTTCTAGAAATCTGTTCTAATCACTTCTAATCAATCTTTGTCTCCTAGAGACTGGACGTTATGGATTTATATGGATCACATGCTTTCTTTGTCATCAACGATCAAATAATGCGAACGACGCTCTCAAGTAATCTATTGCAGCAATATTTAGCCAAGGAATGTTGTATACAGTGAAATCTCAAGTAGAACGCCACTGTCAATTTTGAGCTCAATCATCTCTGTTACTGTGAAACAAATCAAACTTTAGTTAACCGTTGAATTATTGGTGATACTATGATAAACGTTTTATCTGTTGACAAATTCTTTGGATCTCTGAGAGGAGCCAAGAAAAACAGCCTCAAAGTTAAAAGCTAGAGGTCTCCTATTACCGATGTAGCTGTATCTTTTTTCTTGTAATAGTAAACGCTACGTTTATGATAGATAGAGATTTTGTTATTTACTCAAACTAATGCGGCGGAGTCCTTTGTTTGTTGTTTACCGTAAAACCGATAATAGAAGCCAATAGTTAACTTTGAGTTCATTTATCTCATTTCCTGTCAAAGATATGGAGAAGTGGTCAACTAATAAATTGTTTATCATCGTTCCAGAAGTATGTTGTTCGTTAACAAATTTCTGATCTCTTTATCTGGAACCGAGATAAATTGTCCTCAAAGTTGAAAGTTGGGAGGCCTTTCTATTACAGGCCTTTCTATTATTTTCATTTCCGGAATTATCAAGCAACTCGTTCAG</canonical>
            <polymorphic>GGGAATGAACGAACGGTTTAGGATAAGCGATGACACTGTACATATTATCAGCCGCGATCCCGGCCTGCTGATTCACTCGCGGCGCCTTTTTGTCAAAAGTATGGGGTTGGACGACGCCGACGGGGGGACGAGAAGAATCAAATGAGAAGAAATGAGAGAAGAAGAAGAAGAAGAAGTGAAATACTGGGGCGGGAAAGAACAATCATTACTCATTACTCATCTATTCACTTTAATGTTTTTGGTGGGGTCTTTCTCTCTCGTTTTTTTCCCTTTTCTAGAAATCTGTTCTAATCACTTCTAATCAATCTTTGTCTCCTAGAGACTGGACGTTATGGATTTATATGGATCACATGCTTTCTTTGTCATCAACGATCAAATAATGCGAACGACGCTCTCAAGTAATCTATTGCAGCAATATTTAGCCAAGGAATGTTGTATACAGTGAAATCTCAAGTAGAACGCCACTGTCAATTTTGAGCTCAATCATCTCTGTTACTGTRAAACAAATCAAACTTTAGTTAACCGTTGAATTATTGGTGATACTATGATAAACGTTTTATCTGTTGACAAATTCTTTGGATCTCTGAGAGGAGCCAAGAAAAACAGCCTCAAAGTTAAAAGCTAGAGGTCTCCTATTACCGATGTAGCTGTATCTTTTTTCTTGTAATAGTAAACGCTACGTTTATGATAGATAGAGATTTTGTTATTTACTCAAACTAATGCGGCGGAGTCCTTTGTTTGTTGTTTACCGTAAAACCGATAATAGAAGCCAATAGTTAACTTTGAGTTCATTTATCTCATTTCCTGTCAAAGATATGGAGAAGTGGTCAACTAATAAATTGTTTATCATCGTTCCAGAAGTATGTTGTTCGTTAACAAATTTCTGATCTCTTTATCTGGAACCGAGATAAATTGTCCTCAAAGTTGAAAGTTGGGAGGCCTTTCTATTACAGGCCTTTCTATTATTTTCATTTCCGGAATTATCAAGCAACTCGTTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>287 174 103 95 55 50 49 40 39 36 35 20 17</canonical_bands>
                <polymorphic_bands>287 174 103 95 75 55 50 49 40 35 20 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTTAGCCAAGGAATGTTGTAT</pcr_primer_p1>
		<pcr_primer_p2>ACGTAGCGTTTACTATTACAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>TATTTAGCCAAGGAATGTTGTATACAGTGAAATCTCAAGTAGAACGCCACTGTCAATTTTGAGCTCAATCATCTCTGTTACTGTGAAACAAATCAAACTTTAGTTAACCGTTGAATTATTGGTGATACTATGATAAACGTTTTATCTGTTGACAAATTCTTTGGATCTCTGAGAGGAGCCAAGAAAAACAGCCTCAAAGTTAAAAGCTAGAGGTCTCCTATTACCGATGTAGCTGTATCTTTTTTCTTGTAATAGTAAACGCTACGT</canonical_amplicon>
		<polymorphic_amplicon>TATTTAGCCAAGGAATGTTGTATACAGTGAAATCTCAAGTAGAACGCCACTGTCAATTTTGAGCTCAATCATCTCTGTTACTGTRAAACAAATCAAACTTTAGTTAACCGTTGAATTATTGGTGATACTATGATAAACGTTTTATCTGTTGACAAATTCTTTGGATCTCTGAGAGGAGCCAAGAAAAACAGCCTCAAAGTTAAAAGCTAGAGGTCTCCTATTACCGATGTAGCTGTATCTTTTTTCTTGTAATAGTAAACGCTACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37995</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1358364</contig_pos>
        <strand></strand>
        <context>gcctcaaagt[T/A]aaaagctaga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GACAAATTCTTTGGATCTCTGAGAGGAGCCAAGAAAAACAGCCTCAAAGT</left_flank>
        <right_flank>AAAAGCTAGAGGTCTCCTATTACCGATGTAGCTGTATCTTTTTTCTTGTA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGACGGGGGGACGAGAAGAATCAAATGAGAAGAAATGAGAGAAGAAGAAGAAGAAGAAGTGAAATACTGGGGCGGGAAAGAACAATCATTACTCATTACTCATCTATTCACTTTAATGTTTTTGGTGGGGTCTTTCTCTCTCGTTTTTTTCCCTTTTCTAGAAATCTGTTCTAATCACTTCTAATCAATCTTTGTCTCCTAGAGACTGGACGTTATGGATTTATATGGATCACATGCTTTCTTTGTCATCAACGATCAAATAATGCGAACGACGCTCTCAAGTAATCTATTGCAGCAATATTTAGCCAAGGAATGTTGTATACAGTGAAATCTCAAGTAGAACGCCACTGTCAATTTTGAGCTCAATCATCTCTGTTACTGTGAAACAAATCAAACTTTAGTTAACCGTTGAATTATTGGTGATACTATGATAAACGTTTTATCTGTTGACAAATTCTTTGGATCTCTGAGAGGAGCCAAGAAAAACAGCCTCAAAGTTAAAAGCTAGAGGTCTCCTATTACCGATGTAGCTGTATCTTTTTTCTTGTAATAGTAAACGCTACGTTTATGATAGATAGAGATTTTGTTATTTACTCAAACTAATGCGGCGGAGTCCTTTGTTTGTTGTTTACCGTAAAACCGATAATAGAAGCCAATAGTTAACTTTGAGTTCATTTATCTCATTTCCTGTCAAAGATATGGAGAAGTGGTCAACTAATAAATTGTTTATCATCGTTCCAGAAGTATGTTGTTCGTTAACAAATTTCTGATCTCTTTATCTGGAACCGAGATAAATTGTCCTCAAAGTTGAAAGTTGGGAGGCCTTTCTATTACAGGCCTTTCTATTATTTTCATTTCCGGAATTATCAAGCAACTCGTTCAGCTGAAACAAGCTACCATTTGAAAAAGTGAAGGTTGAGTATTAAAATCTTCTATTGCAGGTTTTACGGTGTATTTCATGACCTTCTCAAAAAATATATCTTAAAACAGAACTCACCT</canonical>
            <polymorphic>CCGACGGGGGGACGAGAAGAATCAAATGAGAAGAAATGAGAGAAGAAGAAGAAGAAGAAGTGAAATACTGGGGCGGGAAAGAACAATCATTACTCATTACTCATCTATTCACTTTAATGTTTTTGGTGGGGTCTTTCTCTCTCGTTTTTTTCCCTTTTCTAGAAATCTGTTCTAATCACTTCTAATCAATCTTTGTCTCCTAGAGACTGGACGTTATGGATTTATATGGATCACATGCTTTCTTTGTCATCAACGATCAAATAATGCGAACGACGCTCTCAAGTAATCTATTGCAGCAATATTTAGCCAAGGAATGTTGTATACAGTGAAATCTCAAGTAGAACGCCACTGTCAATTTTGAGCTCAATCATCTCTGTTACTGTGAAACAAATCAAACTTTAGTTAACCGTTGAATTATTGGTGATACTATGATAAACGTTTTATCTGTTGACAAATTCTTTGGATCTCTGAGAGGAGCCAAGAAAAACAGCCTCAAAGTWAAAAGCTAGAGGTCTCCTATTACCGATGTAGCTGTATCTTTTTTCTTGTAATAGTAAACGCTACGTTTATGATAGATAGAGATTTTGTTATTTACTCAAACTAATGCGGCGGAGTCCTTTGTTTGTTGTTTACCGTAAAACCGATAATAGAAGCCAATAGTTAACTTTGAGTTCATTTATCTCATTTCCTGTCAAAGATATGGAGAAGTGGTCAACTAATAAATTGTTTATCATCGTTCCAGAAGTATGTTGTTCGTTAACAAATTTCTGATCTCTTTATCTGGAACCGAGATAAATTGTCCTCAAAGTTGAAAGTTGGGAGGCCTTTCTATTACAGGCCTTTCTATTATTTTCATTTCCGGAATTATCAAGCAACTCGTTCAGCTGAAACAAGCTACCATTTGAAAAAGTGAAGGTTGAGTATTAAAATCTTCTATTGCAGGTTTTACGGTGTATTTCATGACCTTCTCAAAAAATATATCTTAAAACAGAACTCACCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>289 167 162 114 96 96 59 17</canonical_bands>
                <polymorphic_bands>289 258 167 114 96 59 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTTAGCCAAGGAATGTTGTAT</pcr_primer_p1>
		<pcr_primer_p2>ACGTAGCGTTTACTATTACAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>267</pcr_amplicon_size>
		<canonical_amplicon>TATTTAGCCAAGGAATGTTGTATACAGTGAAATCTCAAGTAGAACGCCACTGTCAATTTTGAGCTCAATCATCTCTGTTACTGTGAAACAAATCAAACTTTAGTTAACCGTTGAATTATTGGTGATACTATGATAAACGTTTTATCTGTTGACAAATTCTTTGGATCTCTGAGAGGAGCCAAGAAAAACAGCCTCAAAGTTAAAAGCTAGAGGTCTCCTATTACCGATGTAGCTGTATCTTTTTTCTTGTAATAGTAAACGCTACGT</canonical_amplicon>
		<polymorphic_amplicon>TATTTAGCCAAGGAATGTTGTATACAGTGAAATCTCAAGTAGAACGCCACTGTCAATTTTGAGCTCAATCATCTCTGTTACTGTGAAACAAATCAAACTTTAGTTAACCGTTGAATTATTGGTGATACTATGATAAACGTTTTATCTGTTGACAAATTCTTTGGATCTCTGAGAGGAGCCAAGAAAAACAGCCTCAAAGTWAAAAGCTAGAGGTCTCCTATTACCGATGTAGCTGTATCTTTTTTCTTGTAATAGTAAACGCTACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37996</snp_id>
        <super_contig>c012500985.Contig1</super_contig>
        <contig_pos>1362888</contig_pos>
        <strand>+</strand>
        <context>AACGTAACAG[A/C]TCACCAATAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACGTATGAATGATTTCTCCAGAAGAGTATTTGTATAGAAAAACGTAACAG</left_flank>
        <right_flank>TCACCAATAGTGTTTTTAAGCTTTGGATTGCTGCAATGGACATCAACTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGCTATGTATCTCAACTATGAGAAGTTTCAGTTTGCTATGATTGAGAAATTCGTTCAAAAAACGACTGTTTCAAGTGAAAAATTTAAATTTACTTACTTGTCGACGGGCCGGCTGATAACGATTCAGAATTCAAATTTTAAGCAAAACAACATACTAAACGATTGAATTCGGAAAGCTCTTCAATCTTCTATAAAAGTCGACCGGCTTCAAAAACAACAGATTCATGGACCGGGCTGACGATTTTTGGGTGGCCCGCACACGGTTGTTGATTTTAATATCAATTGATTCTTATTGGAGGTTGTAGGGCTTGCAGAAATTTATCAGTTTTTATGTTTTCTTGCCCGCAATTTCAGTTTTTAACCAAAATATCATACGGCCCGTGTCGGTCCGGCGACAAGAACAAAAACTCAGTTTTACGAATTTATTTTAGATCCTTTTTTTGAAAATACGTATGAATGATTTCTCCAGAAGAGTATTTGTATAGAAAAACGTAACAGCTCACCAATAGTGTTTTTAAGCTTTGGATTGCTGCAATGGACATCAACTGAATCCGATTGTTCCACGCTTCTATTGAACCCTGCTCCTTTTCCACTTGTTTCTCAAGTTCTTTCAACTTGCTTATCTGTAGCTCCTTCTGGTGCTGAACTTTGCTCATGAAGTTCGAGAAGAAATTGACGACATGTCGGCATGCGTTCTCGGGCATCTTGGTGGAGCTGAGGAATTCGCTGATTTCACTGCAGTTAGAGATATTTGTCTCCTCCTGAAAAGGAAACCAATGATTTCAGAGTTTGTGATGTCGAAAAATCAAAAATTACCGTCGCATTAACAGCGTTGTTGAGAAGAGAGAGACAAATCTCATCGACACTGGGTTGGGCCATTTTTTCTGGAAAAAATTTGTTTCTAAAAAATGAGAATAGTGAGACACGGACATGAAGAATCTTAAGAAAAACCAATTGACAGTTTGAAACGTGGCATAACACATTTTTCGTTTAAATTGA</canonical>
            <polymorphic>ACGCTATGTATCTCAACTATGAGAAGTTTCAGTTTGCTATGATTGAGAAATTCGTTCAAAAAACGACTGTTTCAAGTGAAAAATTTAAATTTACTTACTTGTCGACGGGCCGGCTGATAACGATTCAGAATTCAAATTTTAAGCAAAACAACATACTAAACGATTGAATTCGGAAAGCTCTTCAATCTTCTATAAAAGTCGACCGGCTTCAAAAACAACAGATTCATGGACCGGGCTGACGATTTTTGGGTGGCCCGCACACGGTTGTTGATTTTAATATCAATTGATTCTTATTGGAGGTTGTAGGGCTTGCAGAAATTTATCAGTTTTTATGTTTTCTTGCCCGCAATTTCAGTTTTTAACCAAAATATCATACGGCCCGTGTCGGTCCGGCGACAAGAACAAAAACTCAGTTTTACGAATTTATTTTAGATCCTTTTTTTGAAAATACGTATGAATGATTTCTCCAGAAGAGTATTTGTATAGAAAAACGTAACAGMTCACCAATAGTGTTTTTAAGCTTTGGATTGCTGCAATGGACATCAACTGAATCCGATTGTTCCACGCTTCTATTGAACCCTGCTCCTTTTCCACTTGTTTCTCAAGTTCTTTCAACTTGCTTATCTGTAGCTCCTTCTGGTGCTGAACTTTGCTCATGAAGTTCGAGAAGAAATTGACGACATGTCGGCATGCGTTCTCGGGCATCTTGGTGGAGCTGAGGAATTCGCTGATTTCACTGCAGTTAGAGATATTTGTCTCCTCCTGAAAAGGAAACCAATGATTTCAGAGTTTGTGATGTCGAAAAATCAAAAATTACCGTCGCATTAACAGCGTTGTTGAGAAGAGAGAGACAAATCTCATCGACACTGGGTTGGGCCATTTTTTCTGGAAAAAATTTGTTTCTAAAAAATGAGAATAGTGAGACACGGACATGAAGAATCTTAAGAAAAACCAATTGACAGTTTGAAACGTGGCATAACACATTTTTCGTTTAAATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>322 285 177 110 85 21</canonical_bands>
                <polymorphic_bands>343 285 177 110 85</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>161 124 121 110 109 85 70 64 55 29 29 21 18 4</canonical_bands>
                <polymorphic_bands>161 142 124 110 109 85 70 64 55 29 29 18 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGAAAATACGTATGAATGA</pcr_primer_p1>
		<pcr_primer_p2>GTCAATTTCTTCTCGAACTTCA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGAAAATACGTATGAATGATTTCTCCAGAAGAGTATTTGTATAGAAAAACGTAACAGCTCACCAATAGTGTTTTTAAGCTTTGGATTGCTGCAATGGACATCAACTGAATCCGATTGTTCCACGCTTCTATTGAACCCTGCTCCTTTTCCACTTGTTTCTCAAGTTCTTTCAACTTGCTTATCTGTAGCTCCTTCTGGTGCTGAACTTTGCTCATGAAGTTCGAGAAGAAATTGAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGAAAATACGTATGAATGATTTCTCCAGAAGAGTATTTGTATAGAAAAACGTAACAGMTCACCAATAGTGTTTTTAAGCTTTGGATTGCTGCAATGGACATCAACTGAATCCGATTGTTCCACGCTTCTATTGAACCCTGCTCCTTTTCCACTTGTTTCTCAAGTTCTTTCAACTTGCTTATCTGTAGCTCCTTCTGGTGCTGAACTTTGCTCATGAAGTTCGAGAAGAAATTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37997</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>4623</contig_pos>
        <strand>+</strand>
        <context>GGATAGACGG[C/T]ATGAATACCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACACCTCTAACCCCGACTCATACAACTATTTGACCTATTGGATAGACGG</left_flank>
        <right_flank>ATGAATACCGACACTGAATTCCTATTCGAAGACCTTACTCACAATGGAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGTCACATTATAAATCTATCAGACCGCTAAGTATATCCTCCAGCTCAAGAGGATTTGACTACTAGGAACCGAGATAGAGCCGCTGCAAGTTTAGAAGGCTAGAGACGCAGGCGACGAGACACGCTGCGTCTCTAACTTCGGAAACTTCAAATGACCGTATTTCGAGTTCTAGATGAGCTAGGAAGTTGGTTCTTGGACAGAATCGAACGATTAGAACTGGGATTTTAGATTTTGTATTTGCATCTTGGAATCAAAACCTTATGTATGAACAATCTAAAAGAAATTTTTTTTTTAGGAATTTTCAAAAAAATTCTGTAAATGCAAAGTTTTTAATCTAGGTCTGTTTCAACCCTTCAATCAGCCGAGATCCAGGCCGCTGAAAATGACCAAAATTAACTGAAAAAGTATGTTTAACTGTATGTTTTCAGATATATCCAACTCCTCCAAGTACACCTCTAACCCCGACTCATACAACTATTTGACCTATTGGATAGACGGCATGAATACCGACACTGAATTCCTATTCGAAGACCTTACTCACAATGGAAGTACTAATTATCCGTGGTCTGGAGGCACACCACAATCTATACCAACTGGTTACTGTCTCCATCATTCAGGCCCTCATGATTCCAATGTTCTGCATAGTCCGTAAGTCTGAAAAAAGATTTTGTTCCTAAAATATATCGGATTCTTCAGATGTGATTCATCCAAGAGAAAGGTTACGTTTTGTGAAGAGAAAGGTTACGTTTGCTCGAGAGGTGCATTGTGTCAAGTTCCACCACTAATTGAAACGTATTAAACTATCATAAACGATTTTTAAAAACTCAGAAATTCAAGGAACTCAGCATTTCAGAGTGATTCGTTTCAAATGATTTCTTCACGGTTTTTGAATGATTTATTTGAATGATTGGTTGCATTATCTTTTTAAACTAGTGATTGTTCATTCTCGCTAGTTTCTTCCGATTCTTTTCCACTGGATTCAGAATTCTGTCGGAGCTG</canonical>
            <polymorphic>GTGTCACATTATAAATCTATCAGACCGCTAAGTATATCCTCCAGCTCAAGAGGATTTGACTACTAGGAACCGAGATAGAGCCGCTGCAAGTTTAGAAGGCTAGAGACGCAGGCGACGAGACACGCTGCGTCTCTAACTTCGGAAACTTCAAATGACCGTATTTCGAGTTCTAGATGAGCTAGGAAGTTGGTTCTTGGACAGAATCGAACGATTAGAACTGGGATTTTAGATTTTGTATTTGCATCTTGGAATCAAAACCTTATGTATGAACAATCTAAAAGAAATTTTTTTTTTAGGAATTTTCAAAAAAATTCTGTAAATGCAAAGTTTTTAATCTAGGTCTGTTTCAACCCTTCAATCAGCCGAGATCCAGGCCGCTGAAAATGACCAAAATTAACTGAAAAAGTATGTTTAACTGTATGTTTTCAGATATATCCAACTCCTCCAAGTACACCTCTAACCCCGACTCATACAACTATTTGACCTATTGGATAGACGGYATGAATACCGACACTGAATTCCTATTCGAAGACCTTACTCACAATGGAAGTACTAATTATCCGTGGTCTGGAGGCACACCACAATCTATACCAACTGGTTACTGTCTCCATCATTCAGGCCCTCATGATTCCAATGTTCTGCATAGTCCGTAAGTCTGAAAAAAGATTTTGTTCCTAAAATATATCGGATTCTTCAGATGTGATTCATCCAAGAGAAAGGTTACGTTTTGTGAAGAGAAAGGTTACGTTTGCTCGAGAGGTGCATTGTGTCAAGTTCCACCACTAATTGAAACGTATTAAACTATCATAAACGATTTTTAAAAACTCAGAAATTCAAGGAACTCAGCATTTCAGAGTGATTCGTTTCAAATGATTTCTTCACGGTTTTTGAATGATTTATTTGAATGATTGGTTGCATTATCTTTTTAAACTAGTGATTGTTCATTCTCGCTAGTTTCTTCCGATTCTTTTCCACTGGATTCAGAATTCTGTCGGAGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 376 124</canonical_bands>
                <polymorphic_bands>624 376</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCCTCCAAGTACACCTCTAAC</pcr_primer_p1>
		<pcr_primer_p2>TCCGATATATTTTAGGAACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACTCCTCCAAGTACACCTCTAACCCCGACTCATACAACTATTTGACCTATTGGATAGACGGCATGAATACCGACACTGAATTCCTATTCGAAGACCTTACTCACAATGGAAGTACTAATTATCCGTGGTCTGGAGGCACACCACAATCTATACCAACTGGTTACTGTCTCCATCATTCAGGCCCTCATGATTCCAATGTTCTGCATAGTCCGTAAGTCTGAAAAAAGATTTTGTTCCTAAAATATATCGGA</canonical_amplicon>
		<polymorphic_amplicon>ACTCCTCCAAGTACACCTCTAACCCCGACTCATACAACTATTTGACCTATTGGATAGACGGYATGAATACCGACACTGAATTCCTATTCGAAGACCTTACTCACAATGGAAGTACTAATTATCCGTGGTCTGGAGGCACACCACAATCTATACCAACTGGTTACTGTCTCCATCATTCAGGCCCTCATGATTCCAATGTTCTGCATAGTCCGTAAGTCTGAAAAAAGATTTTGTTCCTAAAATATATCGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37998</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>4650</contig_pos>
        <strand>+</strand>
        <context>AATTCCTATT[C/T]GMAGACCTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTTGACCTATTGGATAGACGGCATGAATACCGACACTGAATTCCTATT</left_flank>
        <right_flank>GAAGACCTTACTCACAATGGAAGTACTAATTATCCGTGGTCTGGAGGCAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAAGTATATCCTCCAGCTCAAGAGGATTTGACTACTAGGAACCGAGATAGAGCCGCTGCAAGTTTAGAAGGCTAGAGACGCAGGCGACGAGACACGCTGCGTCTCTAACTTCGGAAACTTCAAATGACCGTATTTCGAGTTCTAGATGAGCTAGGAAGTTGGTTCTTGGACAGAATCGAACGATTAGAACTGGGATTTTAGATTTTGTATTTGCATCTTGGAATCAAAACCTTATGTATGAACAATCTAAAAGAAATTTTTTTTTTAGGAATTTTCAAAAAAATTCTGTAAATGCAAAGTTTTTAATCTAGGTCTGTTTCAACCCTTCAATCAGCCGAGATCCAGGCCGCTGAAAATGACCAAAATTAACTGAAAAAGTATGTTTAACTGTATGTTTTCAGATATATCCAACTCCTCCAAGTACACCTCTAACCCCGACTCATACAACTATTTGACCTATTGGATAGACGGCATGAATACCGACACTGAATTCCTATTCGAAGACCTTACTCACAATGGAAGTACTAATTATCCGTGGTCTGGAGGCACACCACAATCTATACCAACTGGTTACTGTCTCCATCATTCAGGCCCTCATGATTCCAATGTTCTGCATAGTCCGTAAGTCTGAAAAAAGATTTTGTTCCTAAAATATATCGGATTCTTCAGATGTGATTCATCCAAGAGAAAGGTTACGTTTTGTGAAGAGAAAGGTTACGTTTGCTCGAGAGGTGCATTGTGTCAAGTTCCACCACTAATTGAAACGTATTAAACTATCATAAACGATTTTTAAAAACTCAGAAATTCAAGGAACTCAGCATTTCAGAGTGATTCGTTTCAAATGATTTCTTCACGGTTTTTGAATGATTTATTTGAATGATTGGTTGCATTATCTTTTTAAACTAGTGATTGTTCATTCTCGCTAGTTTCTTCCGATTCTTTTCCACTGGATTCAGAATTCTGTCGGAGCTGTAGATGCAAAGATGTGCACATATCTGA</canonical>
            <polymorphic>CTAAGTATATCCTCCAGCTCAAGAGGATTTGACTACTAGGAACCGAGATAGAGCCGCTGCAAGTTTAGAAGGCTAGAGACGCAGGCGACGAGACACGCTGCGTCTCTAACTTCGGAAACTTCAAATGACCGTATTTCGAGTTCTAGATGAGCTAGGAAGTTGGTTCTTGGACAGAATCGAACGATTAGAACTGGGATTTTAGATTTTGTATTTGCATCTTGGAATCAAAACCTTATGTATGAACAATCTAAAAGAAATTTTTTTTTTAGGAATTTTCAAAAAAATTCTGTAAATGCAAAGTTTTTAATCTAGGTCTGTTTCAACCCTTCAATCAGCCGAGATCCAGGCCGCTGAAAATGACCAAAATTAACTGAAAAAGTATGTTTAACTGTATGTTTTCAGATATATCCAACTCCTCCAAGTACACCTCTAACCCCGACTCATACAACTATTTGACCTATTGGATAGACGGCATGAATACCGACACTGAATTCCTATTYGAAGACCTTACTCACAATGGAAGTACTAATTATCCGTGGTCTGGAGGCACACCACAATCTATACCAACTGGTTACTGTCTCCATCATTCAGGCCCTCATGATTCCAATGTTCTGCATAGTCCGTAAGTCTGAAAAAAGATTTTGTTCCTAAAATATATCGGATTCTTCAGATGTGATTCATCCAAGAGAAAGGTTACGTTTTGTGAAGAGAAAGGTTACGTTTGCTCGAGAGGTGCATTGTGTCAAGTTCCACCACTAATTGAAACGTATTAAACTATCATAAACGATTTTTAAAAACTCAGAAATTCAAGGAACTCAGCATTTCAGAGTGATTCGTTTCAAATGATTTCTTCACGGTTTTTGAATGATTTATTTGAATGATTGGTTGCATTATCTTTTTAAACTAGTGATTGTTCATTCTCGCTAGTTTCTTCCGATTCTTTTCCACTGGATTCAGAATTCTGTCGGAGCTGTAGATGCAAAGATGTGCACATATCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>322 273 227 137 41</canonical_bands>
                <polymorphic_bands>549 273 137 41</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCCTCCAAGTACACCTCTAAC</pcr_primer_p1>
		<pcr_primer_p2>TCCGATATATTTTAGGAACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACTCCTCCAAGTACACCTCTAACCCCGACTCATACAACTATTTGACCTATTGGATAGACGGCATGAATACCGACACTGAATTCCTATTCGAAGACCTTACTCACAATGGAAGTACTAATTATCCGTGGTCTGGAGGCACACCACAATCTATACCAACTGGTTACTGTCTCCATCATTCAGGCCCTCATGATTCCAATGTTCTGCATAGTCCGTAAGTCTGAAAAAAGATTTTGTTCCTAAAATATATCGGA</canonical_amplicon>
		<polymorphic_amplicon>ACTCCTCCAAGTACACCTCTAACCCCGACTCATACAACTATTTGACCTATTGGATAGACGGCATGAATACCGACACTGAATTCCTATTYGAAGACCTTACTCACAATGGAAGTACTAATTATCCGTGGTCTGGAGGCACACCACAATCTATACCAACTGGTTACTGTCTCCATCATTCAGGCCCTCATGATTCCAATGTTCTGCATAGTCCGTAAGTCTGAAAAAAGATTTTGTTCCTAAAATATATCGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb37999</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>4652</contig_pos>
        <strand>+</strand>
        <context>TTCCTATTYG[A/C]AGACCTTACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTGACCTATTGGATAGACGGCATGAATACCGACACTGAATTCCTATTCG</left_flank>
        <right_flank>AGACCTTACTCACAATGGAAGTACTAATTATCCGTGGTCTGGAGGCACAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTATATCCTCCAGCTCAAGAGGATTTGACTACTAGGAACCGAGATAGAGCCGCTGCAAGTTTAGAAGGCTAGAGACGCAGGCGACGAGACACGCTGCGTCTCTAACTTCGGAAACTTCAAATGACCGTATTTCGAGTTCTAGATGAGCTAGGAAGTTGGTTCTTGGACAGAATCGAACGATTAGAACTGGGATTTTAGATTTTGTATTTGCATCTTGGAATCAAAACCTTATGTATGAACAATCTAAAAGAAATTTTTTTTTTAGGAATTTTCAAAAAAATTCTGTAAATGCAAAGTTTTTAATCTAGGTCTGTTTCAACCCTTCAATCAGCCGAGATCCAGGCCGCTGAAAATGACCAAAATTAACTGAAAAAGTATGTTTAACTGTATGTTTTCAGATATATCCAACTCCTCCAAGTACACCTCTAACCCCGACTCATACAACTATTTGACCTATTGGATAGACGGCATGAATACCGACACTGAATTCCTATTCGAAGACCTTACTCACAATGGAAGTACTAATTATCCGTGGTCTGGAGGCACACCACAATCTATACCAACTGGTTACTGTCTCCATCATTCAGGCCCTCATGATTCCAATGTTCTGCATAGTCCGTAAGTCTGAAAAAAGATTTTGTTCCTAAAATATATCGGATTCTTCAGATGTGATTCATCCAAGAGAAAGGTTACGTTTTGTGAAGAGAAAGGTTACGTTTGCTCGAGAGGTGCATTGTGTCAAGTTCCACCACTAATTGAAACGTATTAAACTATCATAAACGATTTTTAAAAACTCAGAAATTCAAGGAACTCAGCATTTCAGAGTGATTCGTTTCAAATGATTTCTTCACGGTTTTTGAATGATTTATTTGAATGATTGGTTGCATTATCTTTTTAAACTAGTGATTGTTCATTCTCGCTAGTTTCTTCCGATTCTTTTCCACTGGATTCAGAATTCTGTCGGAGCTGTAGATGCAAAGATGTGCACATATCTGATT</canonical>
            <polymorphic>AAGTATATCCTCCAGCTCAAGAGGATTTGACTACTAGGAACCGAGATAGAGCCGCTGCAAGTTTAGAAGGCTAGAGACGCAGGCGACGAGACACGCTGCGTCTCTAACTTCGGAAACTTCAAATGACCGTATTTCGAGTTCTAGATGAGCTAGGAAGTTGGTTCTTGGACAGAATCGAACGATTAGAACTGGGATTTTAGATTTTGTATTTGCATCTTGGAATCAAAACCTTATGTATGAACAATCTAAAAGAAATTTTTTTTTTAGGAATTTTCAAAAAAATTCTGTAAATGCAAAGTTTTTAATCTAGGTCTGTTTCAACCCTTCAATCAGCCGAGATCCAGGCCGCTGAAAATGACCAAAATTAACTGAAAAAGTATGTTTAACTGTATGTTTTCAGATATATCCAACTCCTCCAAGTACACCTCTAACCCCGACTCATACAACTATTTGACCTATTGGATAGACGGCATGAATACCGACACTGAATTCCTATTCGMAGACCTTACTCACAATGGAAGTACTAATTATCCGTGGTCTGGAGGCACACCACAATCTATACCAACTGGTTACTGTCTCCATCATTCAGGCCCTCATGATTCCAATGTTCTGCATAGTCCGTAAGTCTGAAAAAAGATTTTGTTCCTAAAATATATCGGATTCTTCAGATGTGATTCATCCAAGAGAAAGGTTACGTTTTGTGAAGAGAAAGGTTACGTTTGCTCGAGAGGTGCATTGTGTCAAGTTCCACCACTAATTGAAACGTATTAAACTATCATAAACGATTTTTAAAAACTCAGAAATTCAAGGAACTCAGCATTTCAGAGTGATTCGTTTCAAATGATTTCTTCACGGTTTTTGAATGATTTATTTGAATGATTGGTTGCATTATCTTTTTAAACTAGTGATTGTTCATTCTCGCTAGTTTCTTCCGATTCTTTTCCACTGGATTCAGAATTCTGTCGGAGCTGTAGATGCAAAGATGTGCACATATCTGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>322 275 227 135 41</canonical_bands>
                <polymorphic_bands>549 275 135 41</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTCCTCCAAGTACACCTCTAAC</pcr_primer_p1>
		<pcr_primer_p2>TCCGATATATTTTAGGAACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACTCCTCCAAGTACACCTCTAACCCCGACTCATACAACTATTTGACCTATTGGATAGACGGCATGAATACCGACACTGAATTCCTATTCGAAGACCTTACTCACAATGGAAGTACTAATTATCCGTGGTCTGGAGGCACACCACAATCTATACCAACTGGTTACTGTCTCCATCATTCAGGCCCTCATGATTCCAATGTTCTGCATAGTCCGTAAGTCTGAAAAAAGATTTTGTTCCTAAAATATATCGGA</canonical_amplicon>
		<polymorphic_amplicon>ACTCCTCCAAGTACACCTCTAACCCCGACTCATACAACTATTTGACCTATTGGATAGACGGCATGAATACCGACACTGAATTCCTATTCGMAGACCTTACTCACAATGGAAGTACTAATTATCCGTGGTCTGGAGGCACACCACAATCTATACCAACTGGTTACTGTCTCCATCATTCAGGCCCTCATGATTCCAATGTTCTGCATAGTCCGTAAGTCTGAAAAAAGATTTTGTTCCTAAAATATATCGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38000</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>4763</contig_pos>
        <strand>+</strand>
        <context>TCCAATGTTC[A/T]GCATAGTCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCAACTGGTTACTGTCTCCATCATTCAGGCCCTCATGATTCCAATGTTC</left_flank>
        <right_flank>GCATAGTCCGTAAGTCTGAAAAAAGATTTTGTTCCTAAAATATATCGGAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAAACTTCAAATGACCGTATTTCGAGTTCTAGATGAGCTAGGAAGTTGGTTCTTGGACAGAATCGAACGATTAGAACTGGGATTTTAGATTTTGTATTTGCATCTTGGAATCAAAACCTTATGTATGAACAATCTAAAAGAAATTTTTTTTTTAGGAATTTTCAAAAAAATTCTGTAAATGCAAAGTTTTTAATCTAGGTCTGTTTCAACCCTTCAATCAGCCGAGATCCAGGCCGCTGAAAATGACCAAAATTAACTGAAAAAGTATGTTTAACTGTATGTTTTCAGATATATCCAACTCCTCCAAGTACACCTCTAACCCCGACTCATACAACTATTTGACCTATTGGATAGACGGCATGAATACCGACACTGAATTCCTATTCGAAGACCTTACTCACAATGGAAGTACTAATTATCCGTGGTCTGGAGGCACACCACAATCTATACCAACTGGTTACTGTCTCCATCATTCAGGCCCTCATGATTCCAATGTTCTGCATAGTCCGTAAGTCTGAAAAAAGATTTTGTTCCTAAAATATATCGGATTCTTCAGATGTGATTCATCCAAGAGAAAGGTTACGTTTTGTGAAGAGAAAGGTTACGTTTGCTCGAGAGGTGCATTGTGTCAAGTTCCACCACTAATTGAAACGTATTAAACTATCATAAACGATTTTTAAAAACTCAGAAATTCAAGGAACTCAGCATTTCAGAGTGATTCGTTTCAAATGATTTCTTCACGGTTTTTGAATGATTTATTTGAATGATTGGTTGCATTATCTTTTTAAACTAGTGATTGTTCATTCTCGCTAGTTTCTTCCGATTCTTTTCCACTGGATTCAGAATTCTGTCGGAGCTGTAGATGCAAAGATGTGCACATATCTGATTATACCGCCGCCACAGATGGTTATAGTTGATTGTGCTATAAACTACTAAAGTGCTCGAAGTACTTGATCCATTCATCATTGACCGTGATCTGAATTTCATTGTATTTTCATG</canonical>
            <polymorphic>GGAAACTTCAAATGACCGTATTTCGAGTTCTAGATGAGCTAGGAAGTTGGTTCTTGGACAGAATCGAACGATTAGAACTGGGATTTTAGATTTTGTATTTGCATCTTGGAATCAAAACCTTATGTATGAACAATCTAAAAGAAATTTTTTTTTTAGGAATTTTCAAAAAAATTCTGTAAATGCAAAGTTTTTAATCTAGGTCTGTTTCAACCCTTCAATCAGCCGAGATCCAGGCCGCTGAAAATGACCAAAATTAACTGAAAAAGTATGTTTAACTGTATGTTTTCAGATATATCCAACTCCTCCAAGTACACCTCTAACCCCGACTCATACAACTATTTGACCTATTGGATAGACGGCATGAATACCGACACTGAATTCCTATTCGAAGACCTTACTCACAATGGAAGTACTAATTATCCGTGGTCTGGAGGCACACCACAATCTATACCAACTGGTTACTGTCTCCATCATTCAGGCCCTCATGATTCCAATGTTCWGCATAGTCCGTAAGTCTGAAAAAAGATTTTGTTCCTAAAATATATCGGATTCTTCAGATGTGATTCATCCAAGAGAAAGGTTACGTTTTGTGAAGAGAAAGGTTACGTTTGCTCGAGAGGTGCATTGTGTCAAGTTCCACCACTAATTGAAACGTATTAAACTATCATAAACGATTTTTAAAAACTCAGAAATTCAAGGAACTCAGCATTTCAGAGTGATTCGTTTCAAATGATTTCTTCACGGTTTTTGAATGATTTATTTGAATGATTGGTTGCATTATCTTTTTAAACTAGTGATTGTTCATTCTCGCTAGTTTCTTCCGATTCTTTTCCACTGGATTCAGAATTCTGTCGGAGCTGTAGATGCAAAGATGTGCACATATCTGATTATACCGCCGCCACAGATGGTTATAGTTGATTGTGCTATAAACTACTAAAGTGCTCGAAGTACTTGATCCATTCATCATTGACCGTGATCTGAATTTCATTGTATTTTCATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>319 153 124 121 101 91 81 10</canonical_bands>
                <polymorphic_bands>440 153 124 101 91 81 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAGTACTAATTATCCGTGGTC</pcr_primer_p1>
		<pcr_primer_p2>GTTTCAATTAGTGGTGGAACTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGAAGTACTAATTATCCGTGGTCTGGAGGCACACCACAATCTATACCAACTGGTTACTGTCTCCATCATTCAGGCCCTCATGATTCCAATGTTCTGCATAGTCCGTAAGTCTGAAAAAAGATTTTGTTCCTAAAATATATCGGATTCTTCAGATGTGATTCATCCAAGAGAAAGGTTACGTTTTGTGAAGAGAAAGGTTACGTTTGCTCGAGAGGTGCATTGTGTCAAGTTCCACCACTAATTGAAAC</canonical_amplicon>
		<polymorphic_amplicon>GGAAGTACTAATTATCCGTGGTCTGGAGGCACACCACAATCTATACCAACTGGTTACTGTCTCCATCATTCAGGCCCTCATGATTCCAATGTTCWGCATAGTCCGTAAGTCTGAAAAAAGATTTTGTTCCTAAAATATATCGGATTCTTCAGATGTGATTCATCCAAGAGAAAGGTTACGTTTTGTGAAGAGAAAGGTTACGTTTGCTCGAGAGGTGCATTGTGTCAAGTTCCACCACTAATTGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38001</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>4829</contig_pos>
        <strand>+</strand>
        <context>AGATGTGATT[C/T]ATCCAAGAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGAAAAAAGATTTTGTTCCTAAAATATATCGGATTCTTCAGATGTGATT</left_flank>
        <right_flank>ATCCAAGAGAAAGGTTACGTTTTGTGAAGAGAAAGGTTACGTTTGCTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACGATTAGAACTGGGATTTTAGATTTTGTATTTGCATCTTGGAATCAAAACCTTATGTATGAACAATCTAAAAGAAATTTTTTTTTTAGGAATTTTCAAAAAAATTCTGTAAATGCAAAGTTTTTAATCTAGGTCTGTTTCAACCCTTCAATCAGCCGAGATCCAGGCCGCTGAAAATGACCAAAATTAACTGAAAAAGTATGTTTAACTGTATGTTTTCAGATATATCCAACTCCTCCAAGTACACCTCTAACCCCGACTCATACAACTATTTGACCTATTGGATAGACGGCATGAATACCGACACTGAATTCCTATTCGAAGACCTTACTCACAATGGAAGTACTAATTATCCGTGGTCTGGAGGCACACCACAATCTATACCAACTGGTTACTGTCTCCATCATTCAGGCCCTCATGATTCCAATGTTCTGCATAGTCCGTAAGTCTGAAAAAAGATTTTGTTCCTAAAATATATCGGATTCTTCAGATGTGATTCATCCAAGAGAAAGGTTACGTTTTGTGAAGAGAAAGGTTACGTTTGCTCGAGAGGTGCATTGTGTCAAGTTCCACCACTAATTGAAACGTATTAAACTATCATAAACGATTTTTAAAAACTCAGAAATTCAAGGAACTCAGCATTTCAGAGTGATTCGTTTCAAATGATTTCTTCACGGTTTTTGAATGATTTATTTGAATGATTGGTTGCATTATCTTTTTAAACTAGTGATTGTTCATTCTCGCTAGTTTCTTCCGATTCTTTTCCACTGGATTCAGAATTCTGTCGGAGCTGTAGATGCAAAGATGTGCACATATCTGATTATACCGCCGCCACAGATGGTTATAGTTGATTGTGCTATAAACTACTAAAGTGCTCGAAGTACTTGATCCATTCATCATTGACCGTGATCTGAATTTCATTGTATTTTCATGAATATGATGAATATACTTACGAACAAAAAAACCCTGATCTTCTACTCTAACGTCTATTAGTGATAG</canonical>
            <polymorphic>AACGATTAGAACTGGGATTTTAGATTTTGTATTTGCATCTTGGAATCAAAACCTTATGTATGAACAATCTAAAAGAAATTTTTTTTTTAGGAATTTTCAAAAAAATTCTGTAAATGCAAAGTTTTTAATCTAGGTCTGTTTCAACCCTTCAATCAGCCGAGATCCAGGCCGCTGAAAATGACCAAAATTAACTGAAAAAGTATGTTTAACTGTATGTTTTCAGATATATCCAACTCCTCCAAGTACACCTCTAACCCCGACTCATACAACTATTTGACCTATTGGATAGACGGCATGAATACCGACACTGAATTCCTATTCGAAGACCTTACTCACAATGGAAGTACTAATTATCCGTGGTCTGGAGGCACACCACAATCTATACCAACTGGTTACTGTCTCCATCATTCAGGCCCTCATGATTCCAATGTTCTGCATAGTCCGTAAGTCTGAAAAAAGATTTTGTTCCTAAAATATATCGGATTCTTCAGATGTGATTYATCCAAGAGAAAGGTTACGTTTTGTGAAGAGAAAGGTTACGTTTGCTCGAGAGGTGCATTGTGTCAAGTTCCACCACTAATTGAAACGTATTAAACTATCATAAACGATTTTTAAAAACTCAGAAATTCAAGGAACTCAGCATTTCAGAGTGATTCGTTTCAAATGATTTCTTCACGGTTTTTGAATGATTTATTTGAATGATTGGTTGCATTATCTTTTTAAACTAGTGATTGTTCATTCTCGCTAGTTTCTTCCGATTCTTTTCCACTGGATTCAGAATTCTGTCGGAGCTGTAGATGCAAAGATGTGCACATATCTGATTATACCGCCGCCACAGATGGTTATAGTTGATTGTGCTATAAACTACTAAAGTGCTCGAAGTACTTGATCCATTCATCATTGACCGTGATCTGAATTTCATTGTATTTTCATGAATATGATGAATATACTTACGAACAAAAAAACCCTGATCTTCTACTCTAACGTCTATTAGTGATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>228 216 162 156 105 61 43 15 14</canonical_bands>
                <polymorphic_bands>228 216 170 162 105 61 43 15</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>378 228 156 105 61 43 15 14</canonical_bands>
                <polymorphic_bands>378 228 170 105 61 43 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAGTACTAATTATCCGTGGTC</pcr_primer_p1>
		<pcr_primer_p2>GTTTCAATTAGTGGTGGAACTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGAAGTACTAATTATCCGTGGTCTGGAGGCACACCACAATCTATACCAACTGGTTACTGTCTCCATCATTCAGGCCCTCATGATTCCAATGTTCTGCATAGTCCGTAAGTCTGAAAAAAGATTTTGTTCCTAAAATATATCGGATTCTTCAGATGTGATTCATCCAAGAGAAAGGTTACGTTTTGTGAAGAGAAAGGTTACGTTTGCTCGAGAGGTGCATTGTGTCAAGTTCCACCACTAATTGAAAC</canonical_amplicon>
		<polymorphic_amplicon>GGAAGTACTAATTATCCGTGGTCTGGAGGCACACCACAATCTATACCAACTGGTTACTGTCTCCATCATTCAGGCCCTCATGATTCCAATGTTCTGCATAGTCCGTAAGTCTGAAAAAAGATTTTGTTCCTAAAATATATCGGATTCTTCAGATGTGATTYATCCAAGAGAAAGGTTACGTTTTGTGAAGAGAAAGGTTACGTTTGCTCGAGAGGTGCATTGTGTCAAGTTCCACCACTAATTGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38002</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>4850</contig_pos>
        <strand>+</strand>
        <context>AAGGTTACGT[G/T]TTGTGAAGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAATATATCGGATTCTTCAGATGTGATTCATCCAAGAGAAAGGTTACGT</left_flank>
        <right_flank>TTGTGAAGAGAAAGGTTACGTTTGCTCGAGAGGTGCATTGTGTCAAGTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATTTTGTATTTGCATCTTGGAATCAAAACCTTATGTATGAACAATCTAAAAGAAATTTTTTTTTTAGGAATTTTCAAAAAAATTCTGTAAATGCAAAGTTTTTAATCTAGGTCTGTTTCAACCCTTCAATCAGCCGAGATCCAGGCCGCTGAAAATGACCAAAATTAACTGAAAAAGTATGTTTAACTGTATGTTTTCAGATATATCCAACTCCTCCAAGTACACCTCTAACCCCGACTCATACAACTATTTGACCTATTGGATAGACGGCATGAATACCGACACTGAATTCCTATTCGAAGACCTTACTCACAATGGAAGTACTAATTATCCGTGGTCTGGAGGCACACCACAATCTATACCAACTGGTTACTGTCTCCATCATTCAGGCCCTCATGATTCCAATGTTCTGCATAGTCCGTAAGTCTGAAAAAAGATTTTGTTCCTAAAATATATCGGATTCTTCAGATGTGATTCATCCAAGAGAAAGGTTACGTTTTGTGAAGAGAAAGGTTACGTTTGCTCGAGAGGTGCATTGTGTCAAGTTCCACCACTAATTGAAACGTATTAAACTATCATAAACGATTTTTAAAAACTCAGAAATTCAAGGAACTCAGCATTTCAGAGTGATTCGTTTCAAATGATTTCTTCACGGTTTTTGAATGATTTATTTGAATGATTGGTTGCATTATCTTTTTAAACTAGTGATTGTTCATTCTCGCTAGTTTCTTCCGATTCTTTTCCACTGGATTCAGAATTCTGTCGGAGCTGTAGATGCAAAGATGTGCACATATCTGATTATACCGCCGCCACAGATGGTTATAGTTGATTGTGCTATAAACTACTAAAGTGCTCGAAGTACTTGATCCATTCATCATTGACCGTGATCTGAATTTCATTGTATTTTCATGAATATGATGAATATACTTACGAACAAAAAAACCCTGATCTTCTACTCTAACGTCTATTAGTGATAGTTGGTTTACATTGCTCGTCTT</canonical>
            <polymorphic>AGATTTTGTATTTGCATCTTGGAATCAAAACCTTATGTATGAACAATCTAAAAGAAATTTTTTTTTTAGGAATTTTCAAAAAAATTCTGTAAATGCAAAGTTTTTAATCTAGGTCTGTTTCAACCCTTCAATCAGCCGAGATCCAGGCCGCTGAAAATGACCAAAATTAACTGAAAAAGTATGTTTAACTGTATGTTTTCAGATATATCCAACTCCTCCAAGTACACCTCTAACCCCGACTCATACAACTATTTGACCTATTGGATAGACGGCATGAATACCGACACTGAATTCCTATTCGAAGACCTTACTCACAATGGAAGTACTAATTATCCGTGGTCTGGAGGCACACCACAATCTATACCAACTGGTTACTGTCTCCATCATTCAGGCCCTCATGATTCCAATGTTCTGCATAGTCCGTAAGTCTGAAAAAAGATTTTGTTCCTAAAATATATCGGATTCTTCAGATGTGATTCATCCAAGAGAAAGGTTACGTKTTGTGAAGAGAAAGGTTACGTTTGCTCGAGAGGTGCATTGTGTCAAGTTCCACCACTAATTGAAACGTATTAAACTATCATAAACGATTTTTAAAAACTCAGAAATTCAAGGAACTCAGCATTTCAGAGTGATTCGTTTCAAATGATTTCTTCACGGTTTTTGAATGATTTATTTGAATGATTGGTTGCATTATCTTTTTAAACTAGTGATTGTTCATTCTCGCTAGTTTCTTCCGATTCTTTTCCACTGGATTCAGAATTCTGTCGGAGCTGTAGATGCAAAGATGTGCACATATCTGATTATACCGCCGCCACAGATGGTTATAGTTGATTGTGCTATAAACTACTAAAGTGCTCGAAGTACTTGATCCATTCATCATTGACCGTGATCTGAATTTCATTGTATTTTCATGAATATGATGAATATACTTACGAACAAAAAAACCCTGATCTTCTACTCTAACGTCTATTAGTGATAGTTGGTTTACATTGCTCGTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAGTACTAATTATCCGTGGTC</pcr_primer_p1>
		<pcr_primer_p2>GTTTCAATTAGTGGTGGAACTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GGAAGTACTAATTATCCGTGGTCTGGAGGCACACCACAATCTATACCAACTGGTTACTGTCTCCATCATTCAGGCCCTCATGATTCCAATGTTCTGCATAGTCCGTAAGTCTGAAAAAAGATTTTGTTCCTAAAATATATCGGATTCTTCAGATGTGATTCATCCAAGAGAAAGGTTACGTTTTGTGAAGAGAAAGGTTACGTTTGCTCGAGAGGTGCATTGTGTCAAGTTCCACCACTAATTGAAAC</canonical_amplicon>
		<polymorphic_amplicon>GGAAGTACTAATTATCCGTGGTCTGGAGGCACACCACAATCTATACCAACTGGTTACTGTCTCCATCATTCAGGCCCTCATGATTCCAATGTTCTGCATAGTCCGTAAGTCTGAAAAAAGATTTTGTTCCTAAAATATATCGGATTCTTCAGATGTGATTCATCCAAGAGAAAGGTTACGTKTTGTGAAGAGAAAGGTTACGTTTGCTCGAGAGGTGCATTGTGTCAAGTTCCACCACTAATTGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38003</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>4962</contig_pos>
        <strand>+</strand>
        <context>GAAATTCAAG[A/G]AACTCAGCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAACGTATTAAACTATCATAAACGATTTTTAAAAACTCAGAAATTCAAG</left_flank>
        <right_flank>AACTCAGCATTTCAGAGTGATTCGTTTCAAATGATTTCTTCACGGTTTTT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTGTTTCAACCCTTCAATCAGCCGAGATCCAGGCCGCTGAAAATGACCAAAATTAACTGAAAAAGTATGTTTAACTGTATGTTTTCAGATATATCCAACTCCTCCAAGTACACCTCTAACCCCGACTCATACAACTATTTGACCTATTGGATAGACGGCATGAATACCGACACTGAATTCCTATTCGAAGACCTTACTCACAATGGAAGTACTAATTATCCGTGGTCTGGAGGCACACCACAATCTATACCAACTGGTTACTGTCTCCATCATTCAGGCCCTCATGATTCCAATGTTCTGCATAGTCCGTAAGTCTGAAAAAAGATTTTGTTCCTAAAATATATCGGATTCTTCAGATGTGATTCATCCAAGAGAAAGGTTACGTTTTGTGAAGAGAAAGGTTACGTTTGCTCGAGAGGTGCATTGTGTCAAGTTCCACCACTAATTGAAACGTATTAAACTATCATAAACGATTTTTAAAAACTCAGAAATTCAAGGAACTCAGCATTTCAGAGTGATTCGTTTCAAATGATTTCTTCACGGTTTTTGAATGATTTATTTGAATGATTGGTTGCATTATCTTTTTAAACTAGTGATTGTTCATTCTCGCTAGTTTCTTCCGATTCTTTTCCACTGGATTCAGAATTCTGTCGGAGCTGTAGATGCAAAGATGTGCACATATCTGATTATACCGCCGCCACAGATGGTTATAGTTGATTGTGCTATAAACTACTAAAGTGCTCGAAGTACTTGATCCATTCATCATTGACCGTGATCTGAATTTCATTGTATTTTCATGAATATGATGAATATACTTACGAACAAAAAAACCCTGATCTTCTACTCTAACGTCTATTAGTGATAGTTGGTTTACATTGCTCGTCTTCTCTCCTCAAAGTCCAATTGTTCGCGAACAAACGCATTGAATAAAATTGACTAAGACATTAGTAGGTTGTTTTGTGGTCCACTGCCAGAGACAGTACCACAATTGGTTCGAC</canonical>
            <polymorphic>GTCTGTTTCAACCCTTCAATCAGCCGAGATCCAGGCCGCTGAAAATGACCAAAATTAACTGAAAAAGTATGTTTAACTGTATGTTTTCAGATATATCCAACTCCTCCAAGTACACCTCTAACCCCGACTCATACAACTATTTGACCTATTGGATAGACGGCATGAATACCGACACTGAATTCCTATTCGAAGACCTTACTCACAATGGAAGTACTAATTATCCGTGGTCTGGAGGCACACCACAATCTATACCAACTGGTTACTGTCTCCATCATTCAGGCCCTCATGATTCCAATGTTCTGCATAGTCCGTAAGTCTGAAAAAAGATTTTGTTCCTAAAATATATCGGATTCTTCAGATGTGATTCATCCAAGAGAAAGGTTACGTTTTGTGAAGAGAAAGGTTACGTTTGCTCGAGAGGTGCATTGTGTCAAGTTCCACCACTAATTGAAACGTATTAAACTATCATAAACGATTTTTAAAAACTCAGAAATTCAAGRAACTCAGCATTTCAGAGTGATTCGTTTCAAATGATTTCTTCACGGTTTTTGAATGATTTATTTGAATGATTGGTTGCATTATCTTTTTAAACTAGTGATTGTTCATTCTCGCTAGTTTCTTCCGATTCTTTTCCACTGGATTCAGAATTCTGTCGGAGCTGTAGATGCAAAGATGTGCACATATCTGATTATACCGCCGCCACAGATGGTTATAGTTGATTGTGCTATAAACTACTAAAGTGCTCGAAGTACTTGATCCATTCATCATTGACCGTGATCTGAATTTCATTGTATTTTCATGAATATGATGAATATACTTACGAACAAAAAAACCCTGATCTTCTACTCTAACGTCTATTAGTGATAGTTGGTTTACATTGCTCGTCTTCTCTCCTCAAAGTCCAATTGTTCGCGAACAAACGCATTGAATAAAATTGACTAAGACATTAGTAGGTTGTTTTGTGGTCCACTGCCAGAGACAGTACCACAATTGGTTCGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATATATCGGATTCTTCAGATG</pcr_primer_p1>
		<pcr_primer_p2>TTAAAAAGATAATGCAACCAATC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAATATATCGGATTCTTCAGATGTGATTCATCCAAGAGAAAGGTTACGTTTTGTGAAGAGAAAGGTTACGTTTGCTCGAGAGGTGCATTGTGTCAAGTTCCACCACTAATTGAAACGTATTAAACTATCATAAACGATTTTTAAAAACTCAGAAATTCAAGGAACTCAGCATTTCAGAGTGATTCGTTTCAAATGATTTCTTCACGGTTTTTGAATGATTTATTTGAATGATTGGTTGCATTATCTTTTTAA</canonical_amplicon>
		<polymorphic_amplicon>AAATATATCGGATTCTTCAGATGTGATTCATCCAAGAGAAAGGTTACGTTTTGTGAAGAGAAAGGTTACGTTTGCTCGAGAGGTGCATTGTGTCAAGTTCCACCACTAATTGAAACGTATTAAACTATCATAAACGATTTTTAAAAACTCAGAAATTCAAGRAACTCAGCATTTCAGAGTGATTCGTTTCAAATGATTTCTTCACGGTTTTTGAATGATTTATTTGAATGATTGGTTGCATTATCTTTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38004</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>4986</contig_pos>
        <strand>+</strand>
        <context>AGAGTGATTC[C/G]TTTCAAATGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GATTTTTAAAAACTCAGAAATTCAAGGAACTCAGCATTTCAGAGTGATTC</left_flank>
        <right_flank>TTTCAAATGATTTCTTCACGGTTTTTGAATGATTTATTTGAATGATTGGT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGATCCAGGCCGCTGAAAATGACCAAAATTAACTGAAAAAGTATGTTTAACTGTATGTTTTCAGATATATCCAACTCCTCCAAGTACACCTCTAACCCCGACTCATACAACTATTTGACCTATTGGATAGACGGCATGAATACCGACACTGAATTCCTATTCGAAGACCTTACTCACAATGGAAGTACTAATTATCCGTGGTCTGGAGGCACACCACAATCTATACCAACTGGTTACTGTCTCCATCATTCAGGCCCTCATGATTCCAATGTTCTGCATAGTCCGTAAGTCTGAAAAAAGATTTTGTTCCTAAAATATATCGGATTCTTCAGATGTGATTCATCCAAGAGAAAGGTTACGTTTTGTGAAGAGAAAGGTTACGTTTGCTCGAGAGGTGCATTGTGTCAAGTTCCACCACTAATTGAAACGTATTAAACTATCATAAACGATTTTTAAAAACTCAGAAATTCAAGGAACTCAGCATTTCAGAGTGATTCGTTTCAAATGATTTCTTCACGGTTTTTGAATGATTTATTTGAATGATTGGTTGCATTATCTTTTTAAACTAGTGATTGTTCATTCTCGCTAGTTTCTTCCGATTCTTTTCCACTGGATTCAGAATTCTGTCGGAGCTGTAGATGCAAAGATGTGCACATATCTGATTATACCGCCGCCACAGATGGTTATAGTTGATTGTGCTATAAACTACTAAAGTGCTCGAAGTACTTGATCCATTCATCATTGACCGTGATCTGAATTTCATTGTATTTTCATGAATATGATGAATATACTTACGAACAAAAAAACCCTGATCTTCTACTCTAACGTCTATTAGTGATAGTTGGTTTACATTGCTCGTCTTCTCTCCTCAAAGTCCAATTGTTCGCGAACAAACGCATTGAATAAAATTGACTAAGACATTAGTAGGTTGTTTTGTGGTCCACTGCCAGAGACAGTACCACAATTGGTTCGACGTCGAAGACAAGAGAGAAAACGAT</canonical>
            <polymorphic>CGAGATCCAGGCCGCTGAAAATGACCAAAATTAACTGAAAAAGTATGTTTAACTGTATGTTTTCAGATATATCCAACTCCTCCAAGTACACCTCTAACCCCGACTCATACAACTATTTGACCTATTGGATAGACGGCATGAATACCGACACTGAATTCCTATTCGAAGACCTTACTCACAATGGAAGTACTAATTATCCGTGGTCTGGAGGCACACCACAATCTATACCAACTGGTTACTGTCTCCATCATTCAGGCCCTCATGATTCCAATGTTCTGCATAGTCCGTAAGTCTGAAAAAAGATTTTGTTCCTAAAATATATCGGATTCTTCAGATGTGATTCATCCAAGAGAAAGGTTACGTTTTGTGAAGAGAAAGGTTACGTTTGCTCGAGAGGTGCATTGTGTCAAGTTCCACCACTAATTGAAACGTATTAAACTATCATAAACGATTTTTAAAAACTCAGAAATTCAAGGAACTCAGCATTTCAGAGTGATTCSTTTCAAATGATTTCTTCACGGTTTTTGAATGATTTATTTGAATGATTGGTTGCATTATCTTTTTAAACTAGTGATTGTTCATTCTCGCTAGTTTCTTCCGATTCTTTTCCACTGGATTCAGAATTCTGTCGGAGCTGTAGATGCAAAGATGTGCACATATCTGATTATACCGCCGCCACAGATGGTTATAGTTGATTGTGCTATAAACTACTAAAGTGCTCGAAGTACTTGATCCATTCATCATTGACCGTGATCTGAATTTCATTGTATTTTCATGAATATGATGAATATACTTACGAACAAAAAAACCCTGATCTTCTACTCTAACGTCTATTAGTGATAGTTGGTTTACATTGCTCGTCTTCTCTCCTCAAAGTCCAATTGTTCGCGAACAAACGCATTGAATAAAATTGACTAAGACATTAGTAGGTTGTTTTGTGGTCCACTGCCAGAGACAGTACCACAATTGGTTCGACGTCGAAGACAAGAGAGAAAACGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATATATCGGATTCTTCAGATG</pcr_primer_p1>
		<pcr_primer_p2>TTAAAAAGATAATGCAACCAATC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAATATATCGGATTCTTCAGATGTGATTCATCCAAGAGAAAGGTTACGTTTTGTGAAGAGAAAGGTTACGTTTGCTCGAGAGGTGCATTGTGTCAAGTTCCACCACTAATTGAAACGTATTAAACTATCATAAACGATTTTTAAAAACTCAGAAATTCAAGGAACTCAGCATTTCAGAGTGATTCGTTTCAAATGATTTCTTCACGGTTTTTGAATGATTTATTTGAATGATTGGTTGCATTATCTTTTTAA</canonical_amplicon>
		<polymorphic_amplicon>AAATATATCGGATTCTTCAGATGTGATTCATCCAAGAGAAAGGTTACGTTTTGTGAAGAGAAAGGTTACGTTTGCTCGAGAGGTGCATTGTGTCAAGTTCCACCACTAATTGAAACGTATTAAACTATCATAAACGATTTTTAAAAACTCAGAAATTCAAGGAACTCAGCATTTCAGAGTGATTCSTTTCAAATGATTTCTTCACGGTTTTTGAATGATTTATTTGAATGATTGGTTGCATTATCTTTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38005</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>6142</contig_pos>
        <strand>+</strand>
        <context>AGTGGAATCG[A/C]GATAAGAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTAAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCG</left_flank>
        <right_flank>GATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAAT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGACATGTTTGAGCAGGTGAGTTGAACTTGGCGCCGGAGAAGCGTGTTGTTGGTGGAGTGTACGCACGAGACGCTTCAAACTGGTGACGTTGGCGGGAGTTTGAATGCAGGCCGTTGGAGTGTAAAAGATCTGAAGAAACCTGAAAGAACATTAGAGGATTTTCCTCATTTGAGATTAAAGACTCGTGGAATATGTGATATTCCACGACAGGTTGTTAAGTTTTTTTAGAAACTAACCTCTTCTTCTGGCCCTAAAGAAATAACGAACGGAATCCCTTTTGTTTTATAAATATAGAAATCGATAATTAGTAGATAATTAAATAGTAATTAGTGAGTAATTAATTTCAAAGAAAATTAGAATAGAGACATCTAAAGACACGACGTCATATGAAGAGAAAGAAAAAGGAGAATGGGAAAGATGGGGAAAAGTTATCGGAAGAAAAAGAGTTGTAAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCA</canonical>
            <polymorphic>TGACATGTTTGAGCAGGTGAGTTGAACTTGGCGCCGGAGAAGCGTGTTGTTGGTGGAGTGTACGCACGAGACGCTTCAAACTGGTGACGTTGGCGGGAGTTTGAATGCAGGCCGTTGGAGTGTAAAAGATCTGAAGAAACCTGAAAGAACATTAGAGGATTTTCCTCATTTGAGATTAAAGACTCGTGGAATATGTGATATTCCACGACAGGTTGTTAAGTTTTTTTAGAAACTAACCTCTTCTTCTGGCCCTAAAGAAATAACGAACGGAATCCCTTTTGTTTTATAAATATAGAAATCGATAATTAGTAGATAATTAAATAGTAATTAGTGAGTAATTAATTTCAAAGAAAATTAGAATAGAGACATCTAAAGACACGACGTCATATGAAGAGAAAGAAAAAGGAGAATGGGAAAGATGGGGAAAAGTTATCGGAAGAAAAAGAGTTGTAAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGMGATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>300 287 198 151 64</canonical_bands>
                <polymorphic_bands>300 287 262 151</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGTTATCGGAAGAAAAAGAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAACTTGTCACTTATTCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAGTTATCGGAAGAAAAAGAGTTGTAAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGTTATCGGAAGAAAAAGAGTTGTAAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGMGATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38006</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>6174</contig_pos>
        <strand>+</strand>
        <context>ACAATTTCAG[A/G]ACTTCAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAG</left_flank>
        <right_flank>ACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCGGAGAAGCGTGTTGTTGGTGGAGTGTACGCACGAGACGCTTCAAACTGGTGACGTTGGCGGGAGTTTGAATGCAGGCCGTTGGAGTGTAAAAGATCTGAAGAAACCTGAAAGAACATTAGAGGATTTTCCTCATTTGAGATTAAAGACTCGTGGAATATGTGATATTCCACGACAGGTTGTTAAGTTTTTTTAGAAACTAACCTCTTCTTCTGGCCCTAAAGAAATAACGAACGGAATCCCTTTTGTTTTATAAATATAGAAATCGATAATTAGTAGATAATTAAATAGTAATTAGTGAGTAATTAATTTCAAAGAAAATTAGAATAGAGACATCTAAAGACACGACGTCATATGAAGAGAAAGAAAAAGGAGAATGGGAAAGATGGGGAAAAGTTATCGGAAGAAAAAGAGTTGTAAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGA</canonical>
            <polymorphic>GCCGGAGAAGCGTGTTGTTGGTGGAGTGTACGCACGAGACGCTTCAAACTGGTGACGTTGGCGGGAGTTTGAATGCAGGCCGTTGGAGTGTAAAAGATCTGAAGAAACCTGAAAGAACATTAGAGGATTTTCCTCATTTGAGATTAAAGACTCGTGGAATATGTGATATTCCACGACAGGTTGTTAAGTTTTTTTAGAAACTAACCTCTTCTTCTGGCCCTAAAGAAATAACGAACGGAATCCCTTTTGTTTTATAAATATAGAAATCGATAATTAGTAGATAATTAAATAGTAATTAGTGAGTAATTAATTTCAAAGAAAATTAGAATAGAGACATCTAAAGACACGACGTCATATGAAGAGAAAGAAAAAGGAGAATGGGAAAGATGGGGAAAAGTTATCGGAAGAAAAAGAGTTGTAAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAGRACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>303 239 100 95 81 53 47 42 26 9 5</canonical_bands>
                <polymorphic_bands>303 239 142 100 81 53 42 26 9 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAGTTATCGGAAGAAAAAGAG</pcr_primer_p1>
		<pcr_primer_p2>AAAAACTTGTCACTTATTCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAGTTATCGGAAGAAAAAGAGTTGTAAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGTTATCGGAAGAAAAAGAGTTGTAAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAGRACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38007</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>6280</contig_pos>
        <strand>+</strand>
        <context>AGATTAGACT[C/T]CTTTATCCCR</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACT</left_flank>
        <right_flank>CTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAAC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTGAAAGAACATTAGAGGATTTTCCTCATTTGAGATTAAAGACTCGTGGAATATGTGATATTCCACGACAGGTTGTTAAGTTTTTTTAGAAACTAACCTCTTCTTCTGGCCCTAAAGAAATAACGAACGGAATCCCTTTTGTTTTATAAATATAGAAATCGATAATTAGTAGATAATTAAATAGTAATTAGTGAGTAATTAATTTCAAAGAAAATTAGAATAGAGACATCTAAAGACACGACGTCATATGAAGAGAAAGAAAAAGGAGAATGGGAAAGATGGGGAAAAGTTATCGGAAGAAAAAGAGTTGTAAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGC</canonical>
            <polymorphic>ACCTGAAAGAACATTAGAGGATTTTCCTCATTTGAGATTAAAGACTCGTGGAATATGTGATATTCCACGACAGGTTGTTAAGTTTTTTTAGAAACTAACCTCTTCTTCTGGCCCTAAAGAAATAACGAACGGAATCCCTTTTGTTTTATAAATATAGAAATCGATAATTAGTAGATAATTAAATAGTAATTAGTGAGTAATTAATTTCAAAGAAAATTAGAATAGAGACATCTAAAGACACGACGTCATATGAAGAGAAAGAAAAAGGAGAATGGGAAAGATGGGGAAAAGTTATCGGAAGAAAAAGAGTTGTAAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTYCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACAAAATGAGAGAGTGAGAGA</pcr_primer_p1>
		<pcr_primer_p2>CCTATTTGTTTTGTTAAATTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGG</canonical_amplicon>
		<polymorphic_amplicon>AAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTYCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38008</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>6290</contig_pos>
        <strand>+</strand>
        <context>YCTTTATCCC[A/G]ATTTCAGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCC</left_flank>
        <right_flank>ATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATTAGAGGATTTTCCTCATTTGAGATTAAAGACTCGTGGAATATGTGATATTCCACGACAGGTTGTTAAGTTTTTTTAGAAACTAACCTCTTCTTCTGGCCCTAAAGAAATAACGAACGGAATCCCTTTTGTTTTATAAATATAGAAATCGATAATTAGTAGATAATTAAATAGTAATTAGTGAGTAATTAATTTCAAAGAAAATTAGAATAGAGACATCTAAAGACACGACGTCATATGAAGAGAAAGAAAAAGGAGAATGGGAAAGATGGGGAAAAGTTATCGGAAGAAAAAGAGTTGTAAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATAT</canonical>
            <polymorphic>ACATTAGAGGATTTTCCTCATTTGAGATTAAAGACTCGTGGAATATGTGATATTCCACGACAGGTTGTTAAGTTTTTTTAGAAACTAACCTCTTCTTCTGGCCCTAAAGAAATAACGAACGGAATCCCTTTTGTTTTATAAATATAGAAATCGATAATTAGTAGATAATTAAATAGTAATTAGTGAGTAATTAATTTCAAAGAAAATTAGAATAGAGACATCTAAAGACACGACGTCATATGAAGAGAAAGAAAAAGGAGAATGGGAAAGATGGGGAAAAGTTATCGGAAGAAAAAGAGTTGTAAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCRATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>350 206 147 129 72 66 30</canonical_bands>
                <polymorphic_bands>350 213 206 129 72 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAATGAGAGAGTGAGAGAGTT</pcr_primer_p1>
		<pcr_primer_p2>AAATCCTATTTGTTTTGTTAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTT</canonical_amplicon>
		<polymorphic_amplicon>CAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCRATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38009</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>6365</contig_pos>
        <strand>+</strand>
        <context>CGATGTGTAT[A/T]AYCTGTGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTAT</left_flank>
        <right_flank>ACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTAGAAACTAACCTCTTCTTCTGGCCCTAAAGAAATAACGAACGGAATCCCTTTTGTTTTATAAATATAGAAATCGATAATTAGTAGATAATTAAATAGTAATTAGTGAGTAATTAATTTCAAAGAAAATTAGAATAGAGACATCTAAAGACACGACGTCATATGAAGAGAAAGAAAAAGGAGAATGGGAAAGATGGGGAAAAGTTATCGGAAGAAAAAGAGTTGTAAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAG</canonical>
            <polymorphic>TTTTAGAAACTAACCTCTTCTTCTGGCCCTAAAGAAATAACGAACGGAATCCCTTTTGTTTTATAAATATAGAAATCGATAATTAGTAGATAATTAAATAGTAATTAGTGAGTAATTAATTTCAAAGAAAATTAGAATAGAGACATCTAAAGACACGACGTCATATGAAGAGAAAGAAAAAGGAGAATGGGAAAGATGGGGAAAAGTTATCGGAAGAAAAAGAGTTGTAAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATWACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAATAAGTGACAAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGGATGAACAAATTGAAGATAA</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATWACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38010</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>6367</contig_pos>
        <strand>+</strand>
        <context>ATGTGTATWA[C/T]CTGTGTTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTA</left_flank>
        <right_flank>CTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGAAACTAACCTCTTCTTCTGGCCCTAAAGAAATAACGAACGGAATCCCTTTTGTTTTATAAATATAGAAATCGATAATTAGTAGATAATTAAATAGTAATTAGTGAGTAATTAATTTCAAAGAAAATTAGAATAGAGACATCTAAAGACACGACGTCATATGAAGAGAAAGAAAAAGGAGAATGGGAAAGATGGGGAAAAGTTATCGGAAGAAAAAGAGTTGTAAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGC</canonical>
            <polymorphic>TTAGAAACTAACCTCTTCTTCTGGCCCTAAAGAAATAACGAACGGAATCCCTTTTGTTTTATAAATATAGAAATCGATAATTAGTAGATAATTAAATAGTAATTAGTGAGTAATTAATTTCAAAGAAAATTAGAATAGAGACATCTAAAGACACGACGTCATATGAAGAGAAAGAAAAAGGAGAATGGGAAAGATGGGGAAAAGTTATCGGAAGAAAAAGAGTTGTAAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTAYCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAATAAGTGACAAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGGATGAACAAATTGAAGATAA</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTAYCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38011</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>6390</contig_pos>
        <strand>+</strand>
        <context>TCAGAAATAT[C/T]TATTGTAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATAT</left_flank>
        <right_flank>TATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCCTAAAGAAATAACGAACGGAATCCCTTTTGTTTTATAAATATAGAAATCGATAATTAGTAGATAATTAAATAGTAATTAGTGAGTAATTAATTTCAAAGAAAATTAGAATAGAGACATCTAAAGACACGACGTCATATGAAGAGAAAGAAAAAGGAGAATGGGAAAGATGGGGAAAAGTTATCGGAAGAAAAAGAGTTGTAAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATACGCTCTATATGTGCC</canonical>
            <polymorphic>GCCCTAAAGAAATAACGAACGGAATCCCTTTTGTTTTATAAATATAGAAATCGATAATTAGTAGATAATTAAATAGTAATTAGTGAGTAATTAATTTCAAAGAAAATTAGAATAGAGACATCTAAAGACACGACGTCATATGAAGAGAAAGAAAAAGGAGAATGGGAAAGATGGGGAAAAGTTATCGGAAGAAAAAGAGTTGTAAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATYTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATACGCTCTATATGTGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAATAAGTGACAAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGGATGAACAAATTGAAGATAA</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATYTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38012</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>6423</contig_pos>
        <strand></strand>
        <context>ACAGaaaaaa[A/T]atataaaaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAA</left_flank>
        <right_flank>ATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTATAAATATAGAAATCGATAATTAGTAGATAATTAAATAGTAATTAGTGAGTAATTAATTTCAAAGAAAATTAGAATAGAGACATCTAAAGACACGACGTCATATGAAGAGAAAGAAAAAGGAGAATGGGAAAGATGGGGAAAAGTTATCGGAAGAAAAAGAGTTGTAAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATACGCTCTATATGTGCCCTTTGAGCTCAATTATCTCGGTACTCATGAGAG</canonical>
            <polymorphic>TTTTATAAATATAGAAATCGATAATTAGTAGATAATTAAATAGTAATTAGTGAGTAATTAATTTCAAAGAAAATTAGAATAGAGACATCTAAAGACACGACGTCATATGAAGAGAAAGAAAAAGGAGAATGGGAAAGATGGGGAAAAGTTATCGGAAGAAAAAGAGTTGTAAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAWATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATACGCTCTATATGTGCCCTTTGAGCTCAATTATCTCGGTACTCATGAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAATAAGTGACAAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGGATGAACAAATTGAAGATAA</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAWATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38013</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>6439</contig_pos>
        <strand></strand>
        <context>aaaatataaa[A/G]CAATGTAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAA</left_flank>
        <right_flank>CAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGATAATTAGTAGATAATTAAATAGTAATTAGTGAGTAATTAATTTCAAAGAAAATTAGAATAGAGACATCTAAAGACACGACGTCATATGAAGAGAAAGAAAAAGGAGAATGGGAAAGATGGGGAAAAGTTATCGGAAGAAAAAGAGTTGTAAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATACGCTCTATATGTGCCCTTTGAGCTCAATTATCTCGGTACTCATGAGAGATATCAAAAATTTGTC</canonical>
            <polymorphic>ATCGATAATTAGTAGATAATTAAATAGTAATTAGTGAGTAATTAATTTCAAAGAAAATTAGAATAGAGACATCTAAAGACACGACGTCATATGAAGAGAAAGAAAAAGGAGAATGGGAAAGATGGGGAAAAGTTATCGGAAGAAAAAGAGTTGTAAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAARCAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATACGCTCTATATGTGCCCTTTGAGCTCAATTATCTCGGTACTCATGAGAGATATCAAAAATTTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAATAAGTGACAAGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGGATGAACAAATTGAAGATAA</pcr_primer_p2>
		<pcr_amplicon_size>228</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAARCAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38014</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>6467</contig_pos>
        <strand>+</strand>
        <context>TTATTGTTTC[C/T]TTTSAAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTC</left_flank>
        <right_flank>TTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTAGTGAGTAATTAATTTCAAAGAAAATTAGAATAGAGACATCTAAAGACACGACGTCATATGAAGAGAAAGAAAAAGGAGAATGGGAAAGATGGGGAAAAGTTATCGGAAGAAAAAGAGTTGTAAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATACGCTCTATATGTGCCCTTTGAGCTCAATTATCTCGGTACTCATGAGAGATATCAAAAATTTGTCAACAGACAAAATGTTACTGATATTATGA</canonical>
            <polymorphic>AATTAGTGAGTAATTAATTTCAAAGAAAATTAGAATAGAGACATCTAAAGACACGACGTCATATGAAGAGAAAGAAAAAGGAGAATGGGAAAGATGGGGAAAAGTTATCGGAAGAAAAAGAGTTGTAAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCYTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATACGCTCTATATGTGCCCTTTGAGCTCAATTATCTCGGTACTCATGAGAGATATCAAAAATTTGTCAACAGACAAAATGTTACTGATATTATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAAAATTGTTGAAACAAACAG</pcr_primer_p1>
		<pcr_primer_p2>ATTATTGGACCAAACTCTACGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAAT</canonical_amplicon>
		<polymorphic_amplicon>TGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCYTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38015</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>6471</contig_pos>
        <strand>+</strand>
        <context>TGTTTCYTTT[C/G]AAAAAASCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTT</left_flank>
        <right_flank>AAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGAGTAATTAATTTCAAAGAAAATTAGAATAGAGACATCTAAAGACACGACGTCATATGAAGAGAAAGAAAAAGGAGAATGGGAAAGATGGGGAAAAGTTATCGGAAGAAAAAGAGTTGTAAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATACGCTCTATATGTGCCCTTTGAGCTCAATTATCTCGGTACTCATGAGAGATATCAAAAATTTGTCAACAGACAAAATGTTACTGATATTATGATTTA</canonical>
            <polymorphic>AGTGAGTAATTAATTTCAAAGAAAATTAGAATAGAGACATCTAAAGACACGACGTCATATGAAGAGAAAGAAAAAGGAGAATGGGAAAGATGGGGAAAAGTTATCGGAAGAAAAAGAGTTGTAAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTSAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATACGCTCTATATGTGCCCTTTGAGCTCAATTATCTCGGTACTCATGAGAGATATCAAAAATTTGTCAACAGACAAAATGTTACTGATATTATGATTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAAAATTGTTGAAACAAACAG</pcr_primer_p1>
		<pcr_primer_p2>ATTATTGGACCAAACTCTACGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAAT</canonical_amplicon>
		<polymorphic_amplicon>TGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTSAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38016</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>6478</contig_pos>
        <strand>+</strand>
        <context>TTTSAAAAAA[C/G]CTTCTCAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAA</left_flank>
        <right_flank>CTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTAATTTCAAAGAAAATTAGAATAGAGACATCTAAAGACACGACGTCATATGAAGAGAAAGAAAAAGGAGAATGGGAAAGATGGGGAAAAGTTATCGGAAGAAAAAGAGTTGTAAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATACGCTCTATATGTGCCCTTTGAGCTCAATTATCTCGGTACTCATGAGAGATATCAAAAATTTGTCAACAGACAAAATGTTACTGATATTATGATTTAACCCCGT</canonical>
            <polymorphic>AATTAATTTCAAAGAAAATTAGAATAGAGACATCTAAAGACACGACGTCATATGAAGAGAAAGAAAAAGGAGAATGGGAAAGATGGGGAAAAGTTATCGGAAGAAAAAGAGTTGTAAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAASCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATACGCTCTATATGTGCCCTTTGAGCTCAATTATCTCGGTACTCATGAGAGATATCAAAAATTTGTCAACAGACAAAATGTTACTGATATTATGATTTAACCCCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAAAATTGTTGAAACAAACAG</pcr_primer_p1>
		<pcr_primer_p2>ATTATTGGACCAAACTCTACGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAAT</canonical_amplicon>
		<polymorphic_amplicon>TGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAASCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38017</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>6520</contig_pos>
        <strand>+</strand>
        <context>GTTCATCCTT[C/T]TTCTGGTAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTT</left_flank>
        <right_flank>TTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACGTCATATGAAGAGAAAGAAAAAGGAGAATGGGAAAGATGGGGAAAAGTTATCGGAAGAAAAAGAGTTGTAAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATACGCTCTATATGTGCCCTTTGAGCTCAATTATCTCGGTACTCATGAGAGATATCAAAAATTTGTCAACAGACAAAATGTTACTGATATTATGATTTAACCCCGTCTAGTTTATCCTTTATTCTCCCCTTTTTCATGTTTTCCTTTT</canonical>
            <polymorphic>CGACGTCATATGAAGAGAAAGAAAAAGGAGAATGGGAAAGATGGGGAAAAGTTATCGGAAGAAAAAGAGTTGTAAACAAAATGAGAGAGTGAGAGAGTTAGAGAAAAAAGAAGTGGAATCGAGATAAGAAGAGGGGGTAAACAACAATTTCAGAACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTYTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATACGCTCTATATGTGCCCTTTGAGCTCAATTATCTCGGTACTCATGAGAGATATCAAAAATTTGTCAACAGACAAAATGTTACTGATATTATGATTTAACCCCGTCTAGTTTATCCTTTATTCTCCCCTTTTTCATGTTTTCCTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTAAAATTGTTGAAACAAACAG</pcr_primer_p1>
		<pcr_primer_p2>ATTATTGGACCAAACTCTACGA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAAT</canonical_amplicon>
		<polymorphic_amplicon>TGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTYTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38018</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>6673</contig_pos>
        <strand>+</strand>
        <context>GGAAAAAAGT[A/G]ATCTTTGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGT</left_flank>
        <right_flank>ATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATACGCTCTATATGTGCCCTTTGAGCTCAATTATCTCGGTACTCATGAGAGATATCAAAAATTTGTCAACAGACAAAATGTTACTGATATTATGATTTAACCCCGTCTAGTTTATCCTTTATTCTCCCCTTTTTCATGTTTTCCTTTTATCTTTACTTTATTTCTATTTTTATATCTCTAATATCTCTTCTCATAAACCATTTAGTCTCTTGATTCAATTGTAATCTTTTATCTTTTATTTTCTTTATCATGGATTGTAACCATACTGTATTTTGCTCCAAGCATCATCCAATACAATGAA</canonical>
            <polymorphic>AACTTCAAAATACCGAAATTTTAAAATTTTCGACATTCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTRATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATACGCTCTATATGTGCCCTTTGAGCTCAATTATCTCGGTACTCATGAGAGATATCAAAAATTTGTCAACAGACAAAATGTTACTGATATTATGATTTAACCCCGTCTAGTTTATCCTTTATTCTCCCCTTTTTCATGTTTTCCTTTTATCTTTACTTTATTTCTATTTTTATATCTCTAATATCTCTTCTCATAAACCATTTAGTCTCTTGATTCAATTGTAATCTTTTATCTTTTATTTTCTTTATCATGGATTGTAACCATACTGTATTTTGCTCCAAGCATCATCCAATACAATGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>501 208 204 72 15</canonical_bands>
                <polymorphic_bands>516 208 204 72</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>285 169 163 132 56 52 42 39 15 12 12 11 7 5</canonical_bands>
                <polymorphic_bands>285 169 163 132 67 56 42 39 12 12 11 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGACATTCGGAACTCGTAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTAAATTCAAATTTTCAGACC</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTRATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38019</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>6709</contig_pos>
        <strand>+</strand>
        <context>ATGTCTTACC[C/T]CAAAGTAGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACC</left_flank>
        <right_flank>CAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATACGCTCTATATGTGCCCTTTGAGCTCAATTATCTCGGTACTCATGAGAGATATCAAAAATTTGTCAACAGACAAAATGTTACTGATATTATGATTTAACCCCGTCTAGTTTATCCTTTATTCTCCCCTTTTTCATGTTTTCCTTTTATCTTTACTTTATTTCTATTTTTATATCTCTAATATCTCTTCTCATAAACCATTTAGTCTCTTGATTCAATTGTAATCTTTTATCTTTTATTTTCTTTATCATGGATTGTAACCATACTGTATTTTGCTCCAAGCATCATCCAATACAATGAAACAAAGATTACGAAAGAACGACGTTTTTTTTTGACA</canonical>
            <polymorphic>TCCATTTTCTGAAGCTTCAGAAATGTCATAATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCYCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATACGCTCTATATGTGCCCTTTGAGCTCAATTATCTCGGTACTCATGAGAGATATCAAAAATTTGTCAACAGACAAAATGTTACTGATATTATGATTTAACCCCGTCTAGTTTATCCTTTATTCTCCCCTTTTTCATGTTTTCCTTTTATCTTTACTTTATTTCTATTTTTATATCTCTAATATCTCTTCTCATAAACCATTTAGTCTCTTGATTCAATTGTAATCTTTTATCTTTTATTTTCTTTATCATGGATTGTAACCATACTGTATTTTGCTCCAAGCATCATCCAATACAATGAAACAAAGATTACGAAAGAACGACGTTTTTTTTTGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>495 313 119 73</canonical_bands>
                <polymorphic_bands>614 313 73</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCGTAGAGTTTGGTCCAATAA</pcr_primer_p1>
		<pcr_primer_p2>TATAGGACGCCTAGCAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATA</canonical_amplicon>
		<polymorphic_amplicon>CTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCYCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38020</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>6738</contig_pos>
        <strand>+</strand>
        <context>TTACTATTGA[A/G]ACTCTGATGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGA</left_flank>
        <right_flank>ACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATACGCTCTATATGTGCCCTTTGAGCTCAATTATCTCGGTACTCATGAGAGATATCAAAAATTTGTCAACAGACAAAATGTTACTGATATTATGATTTAACCCCGTCTAGTTTATCCTTTATTCTCCCCTTTTTCATGTTTTCCTTTTATCTTTACTTTATTTCTATTTTTATATCTCTAATATCTCTTCTCATAAACCATTTAGTCTCTTGATTCAATTGTAATCTTTTATCTTTTATTTTCTTTATCATGGATTGTAACCATACTGTATTTTGCTCCAAGCATCATCCAATACAATGAAACAAAGATTACGAAAGAACGACGTTTTTTTTTGACAATTTAAAAGTTTTGGCATTTCCACAGGCC</canonical>
            <polymorphic>AATCATTTTCTTATCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGARACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATACGCTCTATATGTGCCCTTTGAGCTCAATTATCTCGGTACTCATGAGAGATATCAAAAATTTGTCAACAGACAAAATGTTACTGATATTATGATTTAACCCCGTCTAGTTTATCCTTTATTCTCCCCTTTTTCATGTTTTCCTTTTATCTTTACTTTATTTCTATTTTTATATCTCTAATATCTCTTCTCATAAACCATTTAGTCTCTTGATTCAATTGTAATCTTTTATCTTTTATTTTCTTTATCATGGATTGTAACCATACTGTATTTTGCTCCAAGCATCATCCAATACAATGAAACAAAGATTACGAAAGAACGACGTTTTTTTTTGACAATTTAAAAGTTTTGGCATTTCCACAGGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>363 346 154 137</canonical_bands>
                <polymorphic_bands>483 363 154</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCGTAGAGTTTGGTCCAATAA</pcr_primer_p1>
		<pcr_primer_p2>TATAGGACGCCTAGCAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATA</canonical_amplicon>
		<polymorphic_amplicon>CTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGARACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38021</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>6751</contig_pos>
        <strand>+</strand>
        <context>TCTGATGAAG[G/T]TTTCCTGCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAG</left_flank>
        <right_flank>TTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATACGCTCTATATGTGCCCTTTGAGCTCAATTATCTCGGTACTCATGAGAGATATCAAAAATTTGTCAACAGACAAAATGTTACTGATATTATGATTTAACCCCGTCTAGTTTATCCTTTATTCTCCCCTTTTTCATGTTTTCCTTTTATCTTTACTTTATTTCTATTTTTATATCTCTAATATCTCTTCTCATAAACCATTTAGTCTCTTGATTCAATTGTAATCTTTTATCTTTTATTTTCTTTATCATGGATTGTAACCATACTGTATTTTGCTCCAAGCATCATCCAATACAATGAAACAAAGATTACGAAAGAACGACGTTTTTTTTTGACAATTTAAAAGTTTTGGCATTTCCACAGGCCGTCTGAAAATACA</canonical>
            <polymorphic>TCTGAATATACTGTAATTAGATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGKTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATACGCTCTATATGTGCCCTTTGAGCTCAATTATCTCGGTACTCATGAGAGATATCAAAAATTTGTCAACAGACAAAATGTTACTGATATTATGATTTAACCCCGTCTAGTTTATCCTTTATTCTCCCCTTTTTCATGTTTTCCTTTTATCTTTACTTTATTTCTATTTTTATATCTCTAATATCTCTTCTCATAAACCATTTAGTCTCTTGATTCAATTGTAATCTTTTATCTTTTATTTTCTTTATCATGGATTGTAACCATACTGTATTTTGCTCCAAGCATCATCCAATACAATGAAACAAAGATTACGAAAGAACGACGTTTTTTTTTGACAATTTAAAAGTTTTGGCATTTCCACAGGCCGTCTGAAAATACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGTAGAGTTTGGTCCAATAA</pcr_primer_p1>
		<pcr_primer_p2>TATAGGACGCCTAGCAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATA</canonical_amplicon>
		<polymorphic_amplicon>CTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGKTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38022</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>6771</contig_pos>
        <strand>+</strand>
        <context>CCAAGAAGAA[A/G]TACCTTYGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAA</left_flank>
        <right_flank>TACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATACGCTCTATATGTGCCCTTTGAGCTCAATTATCTCGGTACTCATGAGAGATATCAAAAATTTGTCAACAGACAAAATGTTACTGATATTATGATTTAACCCCGTCTAGTTTATCCTTTATTCTCCCCTTTTTCATGTTTTCCTTTTATCTTTACTTTATTTCTATTTTTATATCTCTAATATCTCTTCTCATAAACCATTTAGTCTCTTGATTCAATTGTAATCTTTTATCTTTTATTTTCTTTATCATGGATTGTAACCATACTGTATTTTGCTCCAAGCATCATCCAATACAATGAAACAAAGATTACGAAAGAACGACGTTTTTTTTTGACAATTTAAAAGTTTTGGCATTTCCACAGGCCGTCTGAAAATACAATAATCAGAGTAGAGAACAG</canonical>
            <polymorphic>ATTAGACTTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAARTACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATACGCTCTATATGTGCCCTTTGAGCTCAATTATCTCGGTACTCATGAGAGATATCAAAAATTTGTCAACAGACAAAATGTTACTGATATTATGATTTAACCCCGTCTAGTTTATCCTTTATTCTCCCCTTTTTCATGTTTTCCTTTTATCTTTACTTTATTTCTATTTTTATATCTCTAATATCTCTTCTCATAAACCATTTAGTCTCTTGATTCAATTGTAATCTTTTATCTTTTATTTTCTTTATCATGGATTGTAACCATACTGTATTTTGCTCCAAGCATCATCCAATACAATGAAACAAAGATTACGAAAGAACGACGTTTTTTTTTGACAATTTAAAAGTTTTGGCATTTCCACAGGCCGTCTGAAAATACAATAATCAGAGTAGAGAACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGTAGAGTTTGGTCCAATAA</pcr_primer_p1>
		<pcr_primer_p2>TATAGGACGCCTAGCAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATA</canonical_amplicon>
		<polymorphic_amplicon>CTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAARTACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38023</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>6778</contig_pos>
        <strand>+</strand>
        <context>GAARTACCTT[C/T]GCTCTTCAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTT</left_flank>
        <right_flank>GCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATACGCTCTATATGTGCCCTTTGAGCTCAATTATCTCGGTACTCATGAGAGATATCAAAAATTTGTCAACAGACAAAATGTTACTGATATTATGATTTAACCCCGTCTAGTTTATCCTTTATTCTCCCCTTTTTCATGTTTTCCTTTTATCTTTACTTTATTTCTATTTTTATATCTCTAATATCTCTTCTCATAAACCATTTAGTCTCTTGATTCAATTGTAATCTTTTATCTTTTATTTTCTTTATCATGGATTGTAACCATACTGTATTTTGCTCCAAGCATCATCCAATACAATGAAACAAAGATTACGAAAGAACGACGTTTTTTTTTGACAATTTAAAAGTTTTGGCATTTCCACAGGCCGTCTGAAAATACAATAATCAGAGTAGAGAACAGACATGAG</canonical>
            <polymorphic>TTCTTTATCCCGATTTCAGAATAAGTGACAAGTTTTTTAAAAACAATTTAACAAAACAAATAGGATTTATAGCTCTCGATGTGTATTACCTGTGTTTCTGATCAGAAATATCTATTGTAAAATTGTTGAAACAAACAGAAAAAAAATATAAAAATATAAAACAATGTAATATCCAATTTTATTGTTTCTTTTGAAAAAACCTTCTCAAATTCATCTATTTATCTTCAATTTGTTCATCCTTTTTCTGGTAGGTCGCTTCTGTGTATGGTGGCAACAGGTTCACGAGCTCCGTCACCGGAGCTCCTTTGATCCGGAGGTTGGCGATTCGCTCTGGTGACATTCGGAACTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTYGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATACGCTCTATATGTGCCCTTTGAGCTCAATTATCTCGGTACTCATGAGAGATATCAAAAATTTGTCAACAGACAAAATGTTACTGATATTATGATTTAACCCCGTCTAGTTTATCCTTTATTCTCCCCTTTTTCATGTTTTCCTTTTATCTTTACTTTATTTCTATTTTTATATCTCTAATATCTCTTCTCATAAACCATTTAGTCTCTTGATTCAATTGTAATCTTTTATCTTTTATTTTCTTTATCATGGATTGTAACCATACTGTATTTTGCTCCAAGCATCATCCAATACAATGAAACAAAGATTACGAAAGAACGACGTTTTTTTTTGACAATTTAAAAGTTTTGGCATTTCCACAGGCCGTCTGAAAATACAATAATCAGAGTAGAGAACAGACATGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCGTAGAGTTTGGTCCAATAA</pcr_primer_p1>
		<pcr_primer_p2>TATAGGACGCCTAGCAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTTGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATA</canonical_amplicon>
		<polymorphic_amplicon>CTCGTAGAGTTTGGTCCAATAATTGTTCACAGTGATCTGGAAAAAAGTGATCTTTGAAATGAACAGAATGCCTGATGTCTTACCCCAAAGTAGGTTGAGTGAATTACTATTGAGACTCTGATGAAGTTTTCCTGCTCCAAGAAGAAATACCTTYGCTCTTCAATATCATAAATTCTTTTTTTTTTTGAATTTAGAGTTGAAGACAAAGGTCTGAAAATTTGAATTTAAAATTTCTTGCTAGGCGTCCTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38024</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>8617</contig_pos>
        <strand>+</strand>
        <context>aaattttGTC[A/T]ATTTTATAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGAAGCGCTAGAAATGTGCTTTTTAGACAGAATTGTAGGAAATTTTGTC</left_flank>
        <right_flank>ATTTTATAATCAGAAAAAAACTCAATAAGAATTCAATAAAAATTTTTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTAGCTCATCTAGAACTCGAGATATGGTCATTTGAAGTTTCCGAGGTTAGAGACGCAGCGTGTCTTGTCGTCTGCGTCTCTAGCCTCCTAAACTTGAAGCGGCTCTATCTCGGTTCCTAGACGCGCTAGAAATGTGATTTTTAGACAGAATTGTAGGAAATTTTGTCTATTCTATAAATTCTAAAAAGGTCTATTATGAAATTTCAGTTGCCAATATTTCCAATCCTCTCTCATTTTTATCGCATCGTCTGCTTCCAATTATTCTGCTGGTTTAACGGTTTCGCCACAATTCCGTCCGAAAACCCCACAATTCCGTCCGAAAACCAACTTCCTAGCTCATCTAGAACTCGAGATATGGTCGTTTGAAGTTTCCGAGGTTAGAGACGCAGCGTGTCTCGTCGTCTGCGTTTCTAGCCTCTTGTATTTGAAGCGGCTCTATCTTGGTTCCTAGAAGCGCTAGAAATGTGCTTTTTAGACAGAATTGTAGGAAATTTTGTCAATTTTATAATCAGAAAAAAACTCAATAAGAATTCAATAAAAATTTTTCGAAAGTTACGAAAAAATGGCCGAAAGTCAACTGAAAAGCACGTTTAACAATATACTTTTCAGCTGTTATCCCTGCTTCAATCTCTACAACTACGACAGCTGGCTTGGCTACAACAACACCTGAACCGTTCGATGAGGACGCTGAGATTGCGAAAATTAGTGCATCCTGCTTCCACTACAGAGATTTTGGACAGCTAGCAGACGGAAAAGACATGGGCCGGCGTAACTTCGCAATAATGCTCGGTCCTATTTTGCTGAAAGAGTGTTTGCAAGTCATAGGTCTCACAGAGCTACGTAGAACACTAAATTTCGCGCCACTGCGCCCATGGCAACCTGCAAACTATATGAACTTTTTCAATGTCTCTGAGCCTACCATTGAGGCCTATTACGACATTGTAGAACCGCGCTCCTTTTATATTAGTTCTGATAAGGAAAAAAAGCATGAGAACAATT</canonical>
            <polymorphic>CCTAGCTCATCTAGAACTCGAGATATGGTCATTTGAAGTTTCCGAGGTTAGAGACGCAGCGTGTCTTGTCGTCTGCGTCTCTAGCCTCCTAAACTTGAAGCGGCTCTATCTCGGTTCCTAGACGCGCTAGAAATGTGATTTTTAGACAGAATTGTAGGAAATTTTGTCTATTCTATAAATTCTAAAAAGGTCTATTATGAAATTTCAGTTGCCAATATTTCCAATCCTCTCTCATTTTTATCGCATCGTCTGCTTCCAATTATTCTGCTGGTTTAACGGTTTCGCCACAATTCCGTCCGAAAACCCCACAATTCCGTCCGAAAACCAACTTCCTAGCTCATCTAGAACTCGAGATATGGTCGTTTGAAGTTTCCGAGGTTAGAGACGCAGCGTGTCTCGTCGTCTGCGTTTCTAGCCTCTTGTATTTGAAGCGGCTCTATCTTGGTTCCTAGAAGCGCTAGAAATGTGCTTTTTAGACAGAATTGTAGGAAATTTTGTCWATTTTATAATCAGAAAAAAACTCAATAAGAATTCAATAAAAATTTTTCGAAAGTTACGAAAAAATGGCCGAAAGTCAACTGAAAAGCACGTTTAACAATATACTTTTCAGCTGTTATCCCTGCTTCAATCTCTACAACTACGACAGCTGGCTTGGCTACAACAACACCTGAACCGTTCGATGAGGACGCTGAGATTGCGAAAATTAGTGCATCCTGCTTCCACTACAGAGATTTTGGACAGCTAGCAGACGGAAAAGACATGGGCCGGCGTAACTTCGCAATAATGCTCGGTCCTATTTTGCTGAAAGAGTGTTTGCAAGTCATAGGTCTCACAGAGCTACGTAGAACACTAAATTTCGCGCCACTGCGCCCATGGCAACCTGCAAACTATATGAACTTTTTCAATGTCTCTGAGCCTACCATTGAGGCCTATTACGACATTGTAGAACCGCGCTCCTTTTATATTAGTTCTGATAAGGAAAAAAAGCATGAGAACAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>171 161 151 149 144 57 31 30 23 21 18 11 10 10 9 4</canonical_bands>
                <polymorphic_bands>171 161 151 149 144 57 39 31 23 21 18 11 10 10 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCAATTATTCTGCTGGTTTA</pcr_primer_p1>
		<pcr_primer_p2>TAGAGATTGAAGCAGGGATAAC</pcr_primer_p2>
		<pcr_amplicon_size>380</pcr_amplicon_size>
		<canonical_amplicon>TCCAATTATTCTGCTGGTTTAACGGTTTCGCCACAATTCCGTCCGAAAACCCCACAATTCCGTCCGAAAACCAACTTCCTAGCTCATCTAGAACTCGAGATATGGTCGTTTGAAGTTTCCGAGGTTAGAGACGCAGCGTGTCTCGTCGTCTGCGTTTCTAGCCTCTTGTATTTGAAGCGGCTCTATCTTGGTTCCTAGAAGCGCTAGAAATGTGCTTTTTAGACAGAATTGTAGGAAATTTTGTCAATTTTATAATCAGAAAAAAACTCAATAAGAATTCAATAAAAATTTTTCGAAAGTTACGAAAAAATGGCCGAAAGTCAACTGAAAAGCACGTTTAACAATATACTTTTCAGCTGTTATCCCTGCTTCAATCTCTA</canonical_amplicon>
		<polymorphic_amplicon>TCCAATTATTCTGCTGGTTTAACGGTTTCGCCACAATTCCGTCCGAAAACCCCACAATTCCGTCCGAAAACCAACTTCCTAGCTCATCTAGAACTCGAGATATGGTCGTTTGAAGTTTCCGAGGTTAGAGACGCAGCGTGTCTCGTCGTCTGCGTTTCTAGCCTCTTGTATTTGAAGCGGCTCTATCTTGGTTCCTAGAAGCGCTAGAAATGTGCTTTTTAGACAGAATTGTAGGAAATTTTGTCWATTTTATAATCAGAAAAAAACTCAATAAGAATTCAATAAAAATTTTTCGAAAGTTACGAAAAAATGGCCGAAAGTCAACTGAAAAGCACGTTTAACAATATACTTTTCAGCTGTTATCCCTGCTTCAATCTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38025</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>8628</contig_pos>
        <strand>+</strand>
        <context>ATTTTATAAT[C/T]AGAAAAAAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAATGTGCTTTTTAGACAGAATTGTAGGAAATTTTGTCAATTTTATAAT</left_flank>
        <right_flank>AGAAAAAAACTCAATAAGAATTCAATAAAAATTTTTCGAAAGTTACGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGAACTCGAGATATGGTCATTTGAAGTTTCCGAGGTTAGAGACGCAGCGTGTCTTGTCGTCTGCGTCTCTAGCCTCCTAAACTTGAAGCGGCTCTATCTCGGTTCCTAGACGCGCTAGAAATGTGATTTTTAGACAGAATTGTAGGAAATTTTGTCTATTCTATAAATTCTAAAAAGGTCTATTATGAAATTTCAGTTGCCAATATTTCCAATCCTCTCTCATTTTTATCGCATCGTCTGCTTCCAATTATTCTGCTGGTTTAACGGTTTCGCCACAATTCCGTCCGAAAACCCCACAATTCCGTCCGAAAACCAACTTCCTAGCTCATCTAGAACTCGAGATATGGTCGTTTGAAGTTTCCGAGGTTAGAGACGCAGCGTGTCTCGTCGTCTGCGTTTCTAGCCTCTTGTATTTGAAGCGGCTCTATCTTGGTTCCTAGAAGCGCTAGAAATGTGCTTTTTAGACAGAATTGTAGGAAATTTTGTCAATTTTATAATCAGAAAAAAACTCAATAAGAATTCAATAAAAATTTTTCGAAAGTTACGAAAAAATGGCCGAAAGTCAACTGAAAAGCACGTTTAACAATATACTTTTCAGCTGTTATCCCTGCTTCAATCTCTACAACTACGACAGCTGGCTTGGCTACAACAACACCTGAACCGTTCGATGAGGACGCTGAGATTGCGAAAATTAGTGCATCCTGCTTCCACTACAGAGATTTTGGACAGCTAGCAGACGGAAAAGACATGGGCCGGCGTAACTTCGCAATAATGCTCGGTCCTATTTTGCTGAAAGAGTGTTTGCAAGTCATAGGTCTCACAGAGCTACGTAGAACACTAAATTTCGCGCCACTGCGCCCATGGCAACCTGCAAACTATATGAACTTTTTCAATGTCTCTGAGCCTACCATTGAGGCCTATTACGACATTGTAGAACCGCGCTCCTTTTATATTAGTTCTGATAAGGAAAAAAAGCATGAGAACAATTTAATTGCGGCG</canonical>
            <polymorphic>TAGAACTCGAGATATGGTCATTTGAAGTTTCCGAGGTTAGAGACGCAGCGTGTCTTGTCGTCTGCGTCTCTAGCCTCCTAAACTTGAAGCGGCTCTATCTCGGTTCCTAGACGCGCTAGAAATGTGATTTTTAGACAGAATTGTAGGAAATTTTGTCTATTCTATAAATTCTAAAAAGGTCTATTATGAAATTTCAGTTGCCAATATTTCCAATCCTCTCTCATTTTTATCGCATCGTCTGCTTCCAATTATTCTGCTGGTTTAACGGTTTCGCCACAATTCCGTCCGAAAACCCCACAATTCCGTCCGAAAACCAACTTCCTAGCTCATCTAGAACTCGAGATATGGTCGTTTGAAGTTTCCGAGGTTAGAGACGCAGCGTGTCTCGTCGTCTGCGTTTCTAGCCTCTTGTATTTGAAGCGGCTCTATCTTGGTTCCTAGAAGCGCTAGAAATGTGCTTTTTAGACAGAATTGTAGGAAATTTTGTCAATTTTATAATYAGAAAAAAACTCAATAAGAATTCAATAAAAATTTTTCGAAAGTTACGAAAAAATGGCCGAAAGTCAACTGAAAAGCACGTTTAACAATATACTTTTCAGCTGTTATCCCTGCTTCAATCTCTACAACTACGACAGCTGGCTTGGCTACAACAACACCTGAACCGTTCGATGAGGACGCTGAGATTGCGAAAATTAGTGCATCCTGCTTCCACTACAGAGATTTTGGACAGCTAGCAGACGGAAAAGACATGGGCCGGCGTAACTTCGCAATAATGCTCGGTCCTATTTTGCTGAAAGAGTGTTTGCAAGTCATAGGTCTCACAGAGCTACGTAGAACACTAAATTTCGCGCCACTGCGCCCATGGCAACCTGCAAACTATATGAACTTTTTCAATGTCTCTGAGCCTACCATTGAGGCCTATTACGACATTGTAGAACCGCGCTCCTTTTATATTAGTTCTGATAAGGAAAAAAAGCATGAGAACAATTTAATTGCGGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>400 255 138 60 55 39 32 21</canonical_bands>
                <polymorphic_bands>538 255 60 55 39 32 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCAATTATTCTGCTGGTTTA</pcr_primer_p1>
		<pcr_primer_p2>TAGAGATTGAAGCAGGGATAAC</pcr_primer_p2>
		<pcr_amplicon_size>380</pcr_amplicon_size>
		<canonical_amplicon>TCCAATTATTCTGCTGGTTTAACGGTTTCGCCACAATTCCGTCCGAAAACCCCACAATTCCGTCCGAAAACCAACTTCCTAGCTCATCTAGAACTCGAGATATGGTCGTTTGAAGTTTCCGAGGTTAGAGACGCAGCGTGTCTCGTCGTCTGCGTTTCTAGCCTCTTGTATTTGAAGCGGCTCTATCTTGGTTCCTAGAAGCGCTAGAAATGTGCTTTTTAGACAGAATTGTAGGAAATTTTGTCAATTTTATAATCAGAAAAAAACTCAATAAGAATTCAATAAAAATTTTTCGAAAGTTACGAAAAAATGGCCGAAAGTCAACTGAAAAGCACGTTTAACAATATACTTTTCAGCTGTTATCCCTGCTTCAATCTCTA</canonical_amplicon>
		<polymorphic_amplicon>TCCAATTATTCTGCTGGTTTAACGGTTTCGCCACAATTCCGTCCGAAAACCCCACAATTCCGTCCGAAAACCAACTTCCTAGCTCATCTAGAACTCGAGATATGGTCGTTTGAAGTTTCCGAGGTTAGAGACGCAGCGTGTCTCGTCGTCTGCGTTTCTAGCCTCTTGTATTTGAAGCGGCTCTATCTTGGTTCCTAGAAGCGCTAGAAATGTGCTTTTTAGACAGAATTGTAGGAAATTTTGTCAATTTTATAATYAGAAAAAAACTCAATAAGAATTCAATAAAAATTTTTCGAAAGTTACGAAAAAATGGCCGAAAGTCAACTGAAAAGCACGTTTAACAATATACTTTTCAGCTGTTATCCCTGCTTCAATCTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38026</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>8666</contig_pos>
        <strand>+</strand>
        <context>AAAATTTTTC[A/G]AAAGTTACGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATTTTATAATCAGAAAAAAACTCAATAAGAATTCAATAAAAATTTTTC</left_flank>
        <right_flank>AAAGTTACGAAAAAATGGCCGAAAGTCAACTGAAAAGCACGTTTAACAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGACGCAGCGTGTCTTGTCGTCTGCGTCTCTAGCCTCCTAAACTTGAAGCGGCTCTATCTCGGTTCCTAGACGCGCTAGAAATGTGATTTTTAGACAGAATTGTAGGAAATTTTGTCTATTCTATAAATTCTAAAAAGGTCTATTATGAAATTTCAGTTGCCAATATTTCCAATCCTCTCTCATTTTTATCGCATCGTCTGCTTCCAATTATTCTGCTGGTTTAACGGTTTCGCCACAATTCCGTCCGAAAACCCCACAATTCCGTCCGAAAACCAACTTCCTAGCTCATCTAGAACTCGAGATATGGTCGTTTGAAGTTTCCGAGGTTAGAGACGCAGCGTGTCTCGTCGTCTGCGTTTCTAGCCTCTTGTATTTGAAGCGGCTCTATCTTGGTTCCTAGAAGCGCTAGAAATGTGCTTTTTAGACAGAATTGTAGGAAATTTTGTCAATTTTATAATCAGAAAAAAACTCAATAAGAATTCAATAAAAATTTTTCGAAAGTTACGAAAAAATGGCCGAAAGTCAACTGAAAAGCACGTTTAACAATATACTTTTCAGCTGTTATCCCTGCTTCAATCTCTACAACTACGACAGCTGGCTTGGCTACAACAACACCTGAACCGTTCGATGAGGACGCTGAGATTGCGAAAATTAGTGCATCCTGCTTCCACTACAGAGATTTTGGACAGCTAGCAGACGGAAAAGACATGGGCCGGCGTAACTTCGCAATAATGCTCGGTCCTATTTTGCTGAAAGAGTGTTTGCAAGTCATAGGTCTCACAGAGCTACGTAGAACACTAAATTTCGCGCCACTGCGCCCATGGCAACCTGCAAACTATATGAACTTTTTCAATGTCTCTGAGCCTACCATTGAGGCCTATTACGACATTGTAGAACCGCGCTCCTTTTATATTAGTTCTGATAAGGAAAAAAAGCATGAGAACAATTTAATTGCGGCGGTACCATATCTGGATAGTCGCTTTCCGTCGATCCGCAA</canonical>
            <polymorphic>AGAGACGCAGCGTGTCTTGTCGTCTGCGTCTCTAGCCTCCTAAACTTGAAGCGGCTCTATCTCGGTTCCTAGACGCGCTAGAAATGTGATTTTTAGACAGAATTGTAGGAAATTTTGTCTATTCTATAAATTCTAAAAAGGTCTATTATGAAATTTCAGTTGCCAATATTTCCAATCCTCTCTCATTTTTATCGCATCGTCTGCTTCCAATTATTCTGCTGGTTTAACGGTTTCGCCACAATTCCGTCCGAAAACCCCACAATTCCGTCCGAAAACCAACTTCCTAGCTCATCTAGAACTCGAGATATGGTCGTTTGAAGTTTCCGAGGTTAGAGACGCAGCGTGTCTCGTCGTCTGCGTTTCTAGCCTCTTGTATTTGAAGCGGCTCTATCTTGGTTCCTAGAAGCGCTAGAAATGTGCTTTTTAGACAGAATTGTAGGAAATTTTGTCAATTTTATAATCAGAAAAAAACTCAATAAGAATTCAATAAAAATTTTTCRAAAGTTACGAAAAAATGGCCGAAAGTCAACTGAAAAGCACGTTTAACAATATACTTTTCAGCTGTTATCCCTGCTTCAATCTCTACAACTACGACAGCTGGCTTGGCTACAACAACACCTGAACCGTTCGATGAGGACGCTGAGATTGCGAAAATTAGTGCATCCTGCTTCCACTACAGAGATTTTGGACAGCTAGCAGACGGAAAAGACATGGGCCGGCGTAACTTCGCAATAATGCTCGGTCCTATTTTGCTGAAAGAGTGTTTGCAAGTCATAGGTCTCACAGAGCTACGTAGAACACTAAATTTCGCGCCACTGCGCCCATGGCAACCTGCAAACTATATGAACTTTTTCAATGTCTCTGAGCCTACCATTGAGGCCTATTACGACATTGTAGAACCGCGCTCCTTTTATATTAGTTCTGATAAGGAAAAAAAGCATGAGAACAATTTAATTGCGGCGGTACCATATCTGGATAGTCGCTTTCCGTCGATCCGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>362 301 198 130 9</canonical_bands>
                <polymorphic_bands>362 328 301 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCAATTATTCTGCTGGTTTA</pcr_primer_p1>
		<pcr_primer_p2>TAGAGATTGAAGCAGGGATAAC</pcr_primer_p2>
		<pcr_amplicon_size>380</pcr_amplicon_size>
		<canonical_amplicon>TCCAATTATTCTGCTGGTTTAACGGTTTCGCCACAATTCCGTCCGAAAACCCCACAATTCCGTCCGAAAACCAACTTCCTAGCTCATCTAGAACTCGAGATATGGTCGTTTGAAGTTTCCGAGGTTAGAGACGCAGCGTGTCTCGTCGTCTGCGTTTCTAGCCTCTTGTATTTGAAGCGGCTCTATCTTGGTTCCTAGAAGCGCTAGAAATGTGCTTTTTAGACAGAATTGTAGGAAATTTTGTCAATTTTATAATCAGAAAAAAACTCAATAAGAATTCAATAAAAATTTTTCGAAAGTTACGAAAAAATGGCCGAAAGTCAACTGAAAAGCACGTTTAACAATATACTTTTCAGCTGTTATCCCTGCTTCAATCTCTA</canonical_amplicon>
		<polymorphic_amplicon>TCCAATTATTCTGCTGGTTTAACGGTTTCGCCACAATTCCGTCCGAAAACCCCACAATTCCGTCCGAAAACCAACTTCCTAGCTCATCTAGAACTCGAGATATGGTCGTTTGAAGTTTCCGAGGTTAGAGACGCAGCGTGTCTCGTCGTCTGCGTTTCTAGCCTCTTGTATTTGAAGCGGCTCTATCTTGGTTCCTAGAAGCGCTAGAAATGTGCTTTTTAGACAGAATTGTAGGAAATTTTGTCAATTTTATAATCAGAAAAAAACTCAATAAGAATTCAATAAAAATTTTTCRAAAGTTACGAAAAAATGGCCGAAAGTCAACTGAAAAGCACGTTTAACAATATACTTTTCAGCTGTTATCCCTGCTTCAATCTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38027</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>10299</contig_pos>
        <strand>+</strand>
        <context>TCGGAATTGT[C/G]RAGMTATTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCGTGGTCGGTCAAGCATAACTTGCATACCTTGCTGTACTCGGAATTGT</left_flank>
        <right_flank>AAGATATTTTGTTGGCATCCATAATGAGCTTCTGTGTTTGGTGTGCAATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGATATTCTAAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTGAGATCATATCTAATGTATATTTTATATTTTATGTATTTTTTTGGTATGGTCCATAAAAATTGAATAAAATGATTAATATCATCATCATCATTGTTACTCGTTAAAATTATTTATTCCAATTTGAAGATACACCGTGATGTGCTGTTAGTTTCGTTGGCTGAGATGAAGCTGGAACGTGATCGATTCTGGATCAATGCTGCATAAATTTAATTCCATTGTTCTTGCAATTTTTGATCNAACTGAAGGGAACTTGGGGCATTGGAAAATTTCGTGGTCGGTCAAGCATAACTTGCATACCTTGCTGTACTCGGAATTGTGAAGATATTTTGTTGGCATCCATAATGAGCTTCTGTGTTTGGTGTGCAATGGCGAGCCTTTTTGTTGGATCCGTGGTAGTGGTAAAACAATTGTATTAGAAAACAACATAGATTTATTAATTAATAAAATAGGAATGGTATTTTGGGGATGCTCTAGTAGTTAGGGCGATGGGAGGGAGAAGAGAGAATTAACAATATTTATGACATGAAGAGATGTTGGTTGCGGTAGGGTATTCATACCGGTGAGTGCCAAATGCAAAATAAATCAATACAAATTTCAAAGTATAAATACCATGTTTCATATCTCAAGGTTTTCTATTTTAATGGTAAATTTTCAAAAAAATCCGTAATTCTTCTCTCACCAAGTATTCACAGAAGAGTAGTTAGAAAAAAAGGTGTTCAAAAACAATACAGTAATAATAATAGAGACATCTAAAGACACGGCGTCATAGGGAGGTAGTACAGGAATGAAATGAAAAAGGATAGAAGAGGACGGGACGG</canonical>
            <polymorphic>ATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGATATTCTAAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTGAGATCATATCTAATGTATATTTTATATTTTATGTATTTTTTTGGTATGGTCCATAAAAATTGAATAAAATGATTAATATCATCATCATCATTGTTACTCGTTAAAATTATTTATTCCAATTTGAAGATACACCGTGATGTGCTGTTAGTTTCGTTGGCTGAGATGAAGCTGGAACGTGATCGATTCTGGATCAATGCTGCATAAATTTAATTCCATTGTTCTTGCAATTTTTGATCNAACTGAAGGGAACTTGGGGCATTGGAAAATTTCGTGGTCGGTCAAGCATAACTTGCATACCTTGCTGTACTCGGAATTGTSAAGATATTTTGTTGGCATCCATAATGAGCTTCTGTGTTTGGTGTGCAATGGCGAGCCTTTTTGTTGGATCCGTGGTAGTGGTAAAACAATTGTATTAGAAAACAACATAGATTTATTAATTAATAAAATAGGAATGGTATTTTGGGGATGCTCTAGTAGTTAGGGCGATGGGAGGGAGAAGAGAGAATTAACAATATTTATGACATGAAGAGATGTTGGTTGCGGTAGGGTATTCATACCGGTGAGTGCCAAATGCAAAATAAATCAATACAAATTTCAAAGTATAAATACCATGTTTCATATCTCAAGGTTTTCTATTTTAATGGTAAATTTTCAAAAAAATCCGTAATTCTTCTCTCACCAAGTATTCACAGAAGAGTAGTTAGAAAAAAAGGTGTTCAAAAACAATACAGTAATAATAATAGAGACATCTAAAGACACGGCGTCATAGGGAGGTAGTACAGGAATGAAATGAAAAAGGATAGAAGAGGACGGGACGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>313 164 112 95 60 45 43 37 36 29 26 11 7 6 5 5 4 2</canonical_bands>
                <polymorphic_bands>313 164 112 95 81 60 43 37 29 26 11 7 6 5 5 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATTGTTCTTGCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CCCCAAAATACCATTCCTAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CCATTGTTCTTGCAATTTTTGATCNAACTGAAGGGAACTTGGGGCATTGGAAAATTTCGTGGTCGGTCAAGCATAACTTGCATACCTTGCTGTACTCGGAATTGTGAAGATATTTTGTTGGCATCCATAATGAGCTTCTGTGTTTGGTGTGCAATGGCGAGCCTTTTTGTTGGATCCGTGGTAGTGGTAAAACAATTGTATTAGAAAACAACATAGATTTATTAATTAATAAAATAGGAATGGTATTTTGGGG</canonical_amplicon>
		<polymorphic_amplicon>CCATTGTTCTTGCAATTTTTGATCNAACTGAAGGGAACTTGGGGCATTGGAAAATTTCGTGGTCGGTCAAGCATAACTTGCATACCTTGCTGTACTCGGAATTGTSAAGATATTTTGTTGGCATCCATAATGAGCTTCTGTGTTTGGTGTGCAATGGCGAGCCTTTTTGTTGGATCCGTGGTAGTGGTAAAACAATTGTATTAGAAAACAACATAGATTTATTAATTAATAAAATAGGAATGGTATTTTGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38028</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>10300</contig_pos>
        <strand>+</strand>
        <context>CGGAATTGTS[A/G]AGMTATTTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGTGGTCGGTCAAGCATAACTTGCATACCTTGCTGTACTCGGAATTGTG</left_flank>
        <right_flank>AGATATTTTGTTGGCATCCATAATGAGCTTCTGTGTTTGGTGTGCAATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGATATTCTAAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTGAGATCATATCTAATGTATATTTTATATTTTATGTATTTTTTTGGTATGGTCCATAAAAATTGAATAAAATGATTAATATCATCATCATCATTGTTACTCGTTAAAATTATTTATTCCAATTTGAAGATACACCGTGATGTGCTGTTAGTTTCGTTGGCTGAGATGAAGCTGGAACGTGATCGATTCTGGATCAATGCTGCATAAATTTAATTCCATTGTTCTTGCAATTTTTGATCNAACTGAAGGGAACTTGGGGCATTGGAAAATTTCGTGGTCGGTCAAGCATAACTTGCATACCTTGCTGTACTCGGAATTGTGAAGATATTTTGTTGGCATCCATAATGAGCTTCTGTGTTTGGTGTGCAATGGCGAGCCTTTTTGTTGGATCCGTGGTAGTGGTAAAACAATTGTATTAGAAAACAACATAGATTTATTAATTAATAAAATAGGAATGGTATTTTGGGGATGCTCTAGTAGTTAGGGCGATGGGAGGGAGAAGAGAGAATTAACAATATTTATGACATGAAGAGATGTTGGTTGCGGTAGGGTATTCATACCGGTGAGTGCCAAATGCAAAATAAATCAATACAAATTTCAAAGTATAAATACCATGTTTCATATCTCAAGGTTTTCTATTTTAATGGTAAATTTTCAAAAAAATCCGTAATTCTTCTCTCACCAAGTATTCACAGAAGAGTAGTTAGAAAAAAAGGTGTTCAAAAACAATACAGTAATAATAATAGAGACATCTAAAGACACGGCGTCATAGGGAGGTAGTACAGGAATGAAATGAAAAAGGATAGAAGAGGACGGGACGGG</canonical>
            <polymorphic>TTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGATATTCTAAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTGAGATCATATCTAATGTATATTTTATATTTTATGTATTTTTTTGGTATGGTCCATAAAAATTGAATAAAATGATTAATATCATCATCATCATTGTTACTCGTTAAAATTATTTATTCCAATTTGAAGATACACCGTGATGTGCTGTTAGTTTCGTTGGCTGAGATGAAGCTGGAACGTGATCGATTCTGGATCAATGCTGCATAAATTTAATTCCATTGTTCTTGCAATTTTTGATCNAACTGAAGGGAACTTGGGGCATTGGAAAATTTCGTGGTCGGTCAAGCATAACTTGCATACCTTGCTGTACTCGGAATTGTGRAGATATTTTGTTGGCATCCATAATGAGCTTCTGTGTTTGGTGTGCAATGGCGAGCCTTTTTGTTGGATCCGTGGTAGTGGTAAAACAATTGTATTAGAAAACAACATAGATTTATTAATTAATAAAATAGGAATGGTATTTTGGGGATGCTCTAGTAGTTAGGGCGATGGGAGGGAGAAGAGAGAATTAACAATATTTATGACATGAAGAGATGTTGGTTGCGGTAGGGTATTCATACCGGTGAGTGCCAAATGCAAAATAAATCAATACAAATTTCAAAGTATAAATACCATGTTTCATATCTCAAGGTTTTCTATTTTAATGGTAAATTTTCAAAAAAATCCGTAATTCTTCTCTCACCAAGTATTCACAGAAGAGTAGTTAGAAAAAAAGGTGTTCAAAAACAATACAGTAATAATAATAGAGACATCTAAAGACACGGCGTCATAGGGAGGTAGTACAGGAATGAAATGAAAAAGGATAGAAGAGGACGGGACGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATTGTTCTTGCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CCCCAAAATACCATTCCTAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CCATTGTTCTTGCAATTTTTGATCNAACTGAAGGGAACTTGGGGCATTGGAAAATTTCGTGGTCGGTCAAGCATAACTTGCATACCTTGCTGTACTCGGAATTGTGAAGATATTTTGTTGGCATCCATAATGAGCTTCTGTGTTTGGTGTGCAATGGCGAGCCTTTTTGTTGGATCCGTGGTAGTGGTAAAACAATTGTATTAGAAAACAACATAGATTTATTAATTAATAAAATAGGAATGGTATTTTGGGG</canonical_amplicon>
		<polymorphic_amplicon>CCATTGTTCTTGCAATTTTTGATCNAACTGAAGGGAACTTGGGGCATTGGAAAATTTCGTGGTCGGTCAAGCATAACTTGCATACCTTGCTGTACTCGGAATTGTGRAGATATTTTGTTGGCATCCATAATGAGCTTCTGTGTTTGGTGTGCAATGGCGAGCCTTTTTGTTGGATCCGTGGTAGTGGTAAAACAATTGTATTAGAAAACAACATAGATTTATTAATTAATAAAATAGGAATGGTATTTTGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38029</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>10303</contig_pos>
        <strand>+</strand>
        <context>AATTGTSRAG[A/C]TATTTTGTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGGTCGGTCAAGCATAACTTGCATACCTTGCTGTACTCGGAATTGTGAAG</left_flank>
        <right_flank>TATTTTGTTGGCATCCATAATGAGCTTCTGTGTTTGGTGTGCAATGGCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGATATTCTAAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTGAGATCATATCTAATGTATATTTTATATTTTATGTATTTTTTTGGTATGGTCCATAAAAATTGAATAAAATGATTAATATCATCATCATCATTGTTACTCGTTAAAATTATTTATTCCAATTTGAAGATACACCGTGATGTGCTGTTAGTTTCGTTGGCTGAGATGAAGCTGGAACGTGATCGATTCTGGATCAATGCTGCATAAATTTAATTCCATTGTTCTTGCAATTTTTGATCNAACTGAAGGGAACTTGGGGCATTGGAAAATTTCGTGGTCGGTCAAGCATAACTTGCATACCTTGCTGTACTCGGAATTGTGAAGATATTTTGTTGGCATCCATAATGAGCTTCTGTGTTTGGTGTGCAATGGCGAGCCTTTTTGTTGGATCCGTGGTAGTGGTAAAACAATTGTATTAGAAAACAACATAGATTTATTAATTAATAAAATAGGAATGGTATTTTGGGGATGCTCTAGTAGTTAGGGCGATGGGAGGGAGAAGAGAGAATTAACAATATTTATGACATGAAGAGATGTTGGTTGCGGTAGGGTATTCATACCGGTGAGTGCCAAATGCAAAATAAATCAATACAAATTTCAAAGTATAAATACCATGTTTCATATCTCAAGGTTTTCTATTTTAATGGTAAATTTTCAAAAAAATCCGTAATTCTTCTCTCACCAAGTATTCACAGAAGAGTAGTTAGAAAAAAAGGTGTTCAAAAACAATACAGTAATAATAATAGAGACATCTAAAGACACGGCGTCATAGGGAGGTAGTACAGGAATGAAATGAAAAAGGATAGAAGAGGACGGGACGGGAAA</canonical>
            <polymorphic>TGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGATATTCTAAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTGAGATCATATCTAATGTATATTTTATATTTTATGTATTTTTTTGGTATGGTCCATAAAAATTGAATAAAATGATTAATATCATCATCATCATTGTTACTCGTTAAAATTATTTATTCCAATTTGAAGATACACCGTGATGTGCTGTTAGTTTCGTTGGCTGAGATGAAGCTGGAACGTGATCGATTCTGGATCAATGCTGCATAAATTTAATTCCATTGTTCTTGCAATTTTTGATCNAACTGAAGGGAACTTGGGGCATTGGAAAATTTCGTGGTCGGTCAAGCATAACTTGCATACCTTGCTGTACTCGGAATTGTGAAGMTATTTTGTTGGCATCCATAATGAGCTTCTGTGTTTGGTGTGCAATGGCGAGCCTTTTTGTTGGATCCGTGGTAGTGGTAAAACAATTGTATTAGAAAACAACATAGATTTATTAATTAATAAAATAGGAATGGTATTTTGGGGATGCTCTAGTAGTTAGGGCGATGGGAGGGAGAAGAGAGAATTAACAATATTTATGACATGAAGAGATGTTGGTTGCGGTAGGGTATTCATACCGGTGAGTGCCAAATGCAAAATAAATCAATACAAATTTCAAAGTATAAATACCATGTTTCATATCTCAAGGTTTTCTATTTTAATGGTAAATTTTCAAAAAAATCCGTAATTCTTCTCTCACCAAGTATTCACAGAAGAGTAGTTAGAAAAAAAGGTGTTCAAAAACAATACAGTAATAATAATAGAGACATCTAAAGACACGGCGTCATAGGGAGGTAGTACAGGAATGAAATGAAAAAGGATAGAAGAGGACGGGACGGGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATTGTTCTTGCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CCCCAAAATACCATTCCTAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CCATTGTTCTTGCAATTTTTGATCNAACTGAAGGGAACTTGGGGCATTGGAAAATTTCGTGGTCGGTCAAGCATAACTTGCATACCTTGCTGTACTCGGAATTGTGAAGATATTTTGTTGGCATCCATAATGAGCTTCTGTGTTTGGTGTGCAATGGCGAGCCTTTTTGTTGGATCCGTGGTAGTGGTAAAACAATTGTATTAGAAAACAACATAGATTTATTAATTAATAAAATAGGAATGGTATTTTGGGG</canonical_amplicon>
		<polymorphic_amplicon>CCATTGTTCTTGCAATTTTTGATCNAACTGAAGGGAACTTGGGGCATTGGAAAATTTCGTGGTCGGTCAAGCATAACTTGCATACCTTGCTGTACTCGGAATTGTGAAGMTATTTTGTTGGCATCCATAATGAGCTTCTGTGTTTGGTGTGCAATGGCGAGCCTTTTTGTTGGATCCGTGGTAGTGGTAAAACAATTGTATTAGAAAACAACATAGATTTATTAATTAATAAAATAGGAATGGTATTTTGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38030</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>10314</contig_pos>
        <strand>+</strand>
        <context>TATTTTGTTG[G/T]CATCCATAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCATAACTTGCATACCTTGCTGTACTCGGAATTGTGAAGATATTTTGTTG</left_flank>
        <right_flank>CATCCATAATGAGCTTCTGTGTTTGGTGTGCAATGGCGAGCCTTTTTGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGATATTCTAAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTGAGATCATATCTAATGTATATTTTATATTTTATGTATTTTTTTGGTATGGTCCATAAAAATTGAATAAAATGATTAATATCATCATCATCATTGTTACTCGTTAAAATTATTTATTCCAATTTGAAGATACACCGTGATGTGCTGTTAGTTTCGTTGGCTGAGATGAAGCTGGAACGTGATCGATTCTGGATCAATGCTGCATAAATTTAATTCCATTGTTCTTGCAATTTTTGATCNAACTGAAGGGAACTTGGGGCATTGGAAAATTTCGTGGTCGGTCAAGCATAACTTGCATACCTTGCTGTACTCGGAATTGTGAAGATATTTTGTTGGCATCCATAATGAGCTTCTGTGTTTGGTGTGCAATGGCGAGCCTTTTTGTTGGATCCGTGGTAGTGGTAAAACAATTGTATTAGAAAACAACATAGATTTATTAATTAATAAAATAGGAATGGTATTTTGGGGATGCTCTAGTAGTTAGGGCGATGGGAGGGAGAAGAGAGAATTAACAATATTTATGACATGAAGAGATGTTGGTTGCGGTAGGGTATTCATACCGGTGAGTGCCAAATGCAAAATAAATCAATACAAATTTCAAAGTATAAATACCATGTTTCATATCTCAAGGTTTTCTATTTTAATGGTAAATTTTCAAAAAAATCCGTAATTCTTCTCTCACCAAGTATTCACAGAAGAGTAGTTAGAAAAAAAGGTGTTCAAAAACAATACAGTAATAATAATAGAGACATCTAAAGACACGGCGTCATAGGGAGGTAGTACAGGAATGAAATGAAAAAGGATAGAAGAGGACGGGACGGGAAAAAAAGTGGCGG</canonical>
            <polymorphic>GATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGATATTCTAAAATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTCTGAGATTTTGAGATTCTGAGATTCTGAGATTCTGAGATCATATCTAATGTATATTTTATATTTTATGTATTTTTTTGGTATGGTCCATAAAAATTGAATAAAATGATTAATATCATCATCATCATTGTTACTCGTTAAAATTATTTATTCCAATTTGAAGATACACCGTGATGTGCTGTTAGTTTCGTTGGCTGAGATGAAGCTGGAACGTGATCGATTCTGGATCAATGCTGCATAAATTTAATTCCATTGTTCTTGCAATTTTTGATCNAACTGAAGGGAACTTGGGGCATTGGAAAATTTCGTGGTCGGTCAAGCATAACTTGCATACCTTGCTGTACTCGGAATTGTGAAGATATTTTGTTGKCATCCATAATGAGCTTCTGTGTTTGGTGTGCAATGGCGAGCCTTTTTGTTGGATCCGTGGTAGTGGTAAAACAATTGTATTAGAAAACAACATAGATTTATTAATTAATAAAATAGGAATGGTATTTTGGGGATGCTCTAGTAGTTAGGGCGATGGGAGGGAGAAGAGAGAATTAACAATATTTATGACATGAAGAGATGTTGGTTGCGGTAGGGTATTCATACCGGTGAGTGCCAAATGCAAAATAAATCAATACAAATTTCAAAGTATAAATACCATGTTTCATATCTCAAGGTTTTCTATTTTAATGGTAAATTTTCAAAAAAATCCGTAATTCTTCTCTCACCAAGTATTCACAGAAGAGTAGTTAGAAAAAAAGGTGTTCAAAAACAATACAGTAATAATAATAGAGACATCTAAAGACACGGCGTCATAGGGAGGTAGTACAGGAATGAAATGAAAAAGGATAGAAGAGGACGGGACGGGAAAAAAAGTGGCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATTGTTCTTGCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CCCCAAAATACCATTCCTAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CCATTGTTCTTGCAATTTTTGATCNAACTGAAGGGAACTTGGGGCATTGGAAAATTTCGTGGTCGGTCAAGCATAACTTGCATACCTTGCTGTACTCGGAATTGTGAAGATATTTTGTTGGCATCCATAATGAGCTTCTGTGTTTGGTGTGCAATGGCGAGCCTTTTTGTTGGATCCGTGGTAGTGGTAAAACAATTGTATTAGAAAACAACATAGATTTATTAATTAATAAAATAGGAATGGTATTTTGGGG</canonical_amplicon>
		<polymorphic_amplicon>CCATTGTTCTTGCAATTTTTGATCNAACTGAAGGGAACTTGGGGCATTGGAAAATTTCGTGGTCGGTCAAGCATAACTTGCATACCTTGCTGTACTCGGAATTGTGAAGATATTTTGTTGKCATCCATAATGAGCTTCTGTGTTTGGTGTGCAATGGCGAGCCTTTTTGTTGGATCCGTGGTAGTGGTAAAACAATTGTATTAGAAAACAACATAGATTTATTAATTAATAAAATAGGAATGGTATTTTGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38031</snp_id>
        <super_contig>c012600140.Contig1</super_contig>
        <contig_pos>10678</contig_pos>
        <strand>+</strand>
        <context>TCACAGAAGA[C/G]TAGTTAGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATTTTCAAAAAAATCCGTAATTCTTCTCTCACCAAGTATTCACAGAAGA</left_flank>
        <right_flank>TAGTTAGAAAAAAAGGTGTTCAAAAACAATACAGTAATAATAATAGAGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCATAAATTTAATTCCATTGTTCTTGCAATTTTTGATCNAACTGAAGGGAACTTGGGGCATTGGAAAATTTCGTGGTCGGTCAAGCATAACTTGCATACCTTGCTGTACTCGGAATTGTGAAGATATTTTGTTGGCATCCATAATGAGCTTCTGTGTTTGGTGTGCAATGGCGAGCCTTTTTGTTGGATCCGTGGTAGTGGTAAAACAATTGTATTAGAAAACAACATAGATTTATTAATTAATAAAATAGGAATGGTATTTTGGGGATGCTCTAGTAGTTAGGGCGATGGGAGGGAGAAGAGAGAATTAACAATATTTATGACATGAAGAGATGTTGGTTGCGGTAGGGTATTCATACCGGTGAGTGCCAAATGCAAAATAAATCAATACAAATTTCAAAGTATAAATACCATGTTTCATATCTCAAGGTTTTCTATTTTAATGGTAAATTTTCAAAAAAATCCGTAATTCTTCTCTCACCAAGTATTCACAGAAGAGTAGTTAGAAAAAAAGGTGTTCAAAAACAATACAGTAATAATAATAGAGACATCTAAAGACACGGCGTCATAGGGAGGTAGTACAGGAATGAAATGAAAAAGGATAGAAGAGGACGGGACGGGAAAAAAAGTGGCGGAGCTTAAAATTACCCTTAGAATTAAAAGCCGGATTATGTGGTTTTCCCGTTGAATAGAATTTGAGGTAACCGGTTTTTATTCGATTAGTACGGAGGTCTCTCGCATGACTTGTTTACGCTTTCCTGATTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCGGAAATTCGGAAATTCGGAAATTCGGAAATTCAGAAATTCAGAAATTGGAAAATCCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGAAATTCAGAAGCTCACAAATTCAGAAATTCAGAAATTCGGAAATTCAGAGATTCGGAAATTCAG</canonical>
            <polymorphic>TGCATAAATTTAATTCCATTGTTCTTGCAATTTTTGATCNAACTGAAGGGAACTTGGGGCATTGGAAAATTTCGTGGTCGGTCAAGCATAACTTGCATACCTTGCTGTACTCGGAATTGTGAAGATATTTTGTTGGCATCCATAATGAGCTTCTGTGTTTGGTGTGCAATGGCGAGCCTTTTTGTTGGATCCGTGGTAGTGGTAAAACAATTGTATTAGAAAACAACATAGATTTATTAATTAATAAAATAGGAATGGTATTTTGGGGATGCTCTAGTAGTTAGGGCGATGGGAGGGAGAAGAGAGAATTAACAATATTTATGACATGAAGAGATGTTGGTTGCGGTAGGGTATTCATACCGGTGAGTGCCAAATGCAAAATAAATCAATACAAATTTCAAAGTATAAATACCATGTTTCATATCTCAAGGTTTTCTATTTTAATGGTAAATTTTCAAAAAAATCCGTAATTCTTCTCTCACCAAGTATTCACAGAAGASTAGTTAGAAAAAAAGGTGTTCAAAAACAATACAGTAATAATAATAGAGACATCTAAAGACACGGCGTCATAGGGAGGTAGTACAGGAATGAAATGAAAAAGGATAGAAGAGGACGGGACGGGAAAAAAAGTGGCGGAGCTTAAAATTACCCTTAGAATTAAAAGCCGGATTATGTGGTTTTCCCGTTGAATAGAATTTGAGGTAACCGGTTTTTATTCGATTAGTACGGAGGTCTCTCGCATGACTTGTTTACGCTTTCCTGATTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCGGAAATTCGGAAATTCGGAAATTCGGAAATTCAGAAATTCAGAAATTGGAAAATCCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCGGAAATTCAGAAATTCAGAAGCTCACAAATTCAGAAATTCAGAAATTCGGAAATTCAGAGATTCGGAAATTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAATGCAAAATAAATCAATACA</pcr_primer_p1>
		<pcr_primer_p2>GTCCTCTTCTATCCTTTTTCATT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAAATGCAAAATAAATCAATACAAATTTCAAAGTATAAATACCATGTTTCATATCTCAAGGTTTTCTATTTTAATGGTAAATTTTCAAAAAAATCCGTAATTCTTCTCTCACCAAGTATTCACAGAAGAGTAGTTAGAAAAAAAGGTGTTCAAAAACAATACAGTAATAATAATAGAGACATCTAAAGACACGGCGTCATAGGGAGGTAGTACAGGAATGAAATGAAAAAGGATAGAAGAGGAC</canonical_amplicon>
		<polymorphic_amplicon>CAAATGCAAAATAAATCAATACAAATTTCAAAGTATAAATACCATGTTTCATATCTCAAGGTTTTCTATTTTAATGGTAAATTTTCAAAAAAATCCGTAATTCTTCTCTCACCAAGTATTCACAGAAGASTAGTTAGAAAAAAAGGTGTTCAAAAACAATACAGTAATAATAATAGAGACATCTAAAGACACGGCGTCATAGGGAGGTAGTACAGGAATGAAATGAAAAAGGATAGAAGAGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38032</snp_id>
        <super_contig>c012601094.Contig2</super_contig>
        <contig_pos>4163</contig_pos>
        <strand></strand>
        <context>agggcaacga[A/T]ttcaaagaag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCACAAAAACAAGTATGCCCCTCACCATTCTTTGAATTCGAGGGCAACGA</left_flank>
        <right_flank>TTCAAAGAAGCCAAGTGCCAAAATTGATATTTTTGGCATAACTTGTGTAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAGGTGTCCCATCATCAGTGAATATGTTTATTTTTAGGACCTAATTTAAAATTCTGTTTAAGCCGTTGATAAGATTTTGTCGTTTTAATCATGTTTAAACAAGAGTCTGGCTATTTCCATCAAGATTAACTATAGATGTGCCCTGTCACATGTCACACTTCACCAAAAATAGGGGTCAGGCTCGGAAAATCGTAAATATTTTTTGATTCTAGGGCCTAAATCAAAATTTTGTTCAAGCCGTTGATAAGATTATGTTCTTCTGATTATGTTAAAAATAAGTTTGGCAGTTTCTATCAAGTTTAACTATAGATGTGTCCTGTCACATGTCAAAATTTTGCTTTTTTCAAGATGATGATTTTAAGAAATAGTACGGCATTTGAAAAATTGATTTTGCATGTCGCAAGATTCTATTTCAAACACTCTAGGCAAACCATACGCAAGTAAAAATCACAAAAACAAGTATGCCCCTCACCATTCTTTGAATTCGAGGGCAACGAATTCAAAGAAGCCAAGTGCCAAAATTGATATTTTTGGCATAACTTGTGTAAGCATGATTTCCCCCGAGGTATTGATATGTTTCTATAGTAAATCAAATGTGCTAAATTCAATGGTCATAATGAAAAGAAAAGTTAACCTAGGATTTTTGAGATATTGAAAATTTTTTTGATTTTTTCAAAAAATCAAAAATCCAATCAATAGGAAAAAAAATTGATAAATTTTATTTTCAAATGTTCAATCAATTGTATATTTACTGTTTTTTGAATTTCAACAAACTGACATAAACTGACAAAGTTATGATTTTTTGCAAATTTAGGCATTTTTTGGTACTTTTTGGACCATTACTCCCAAAAGAAATTTTTACCAACTATTCCGTTTGGAATCTAAAATAACTTTTTACGCTCTATCCAACCATATATATAGGTCTCGATTTTTTTCGAGGGTAACACTTGGGAGTCATTCCATGTAAATGTGTTAATGTCTCATTTCTGCACACTAAA</canonical>
            <polymorphic>AAAAGGTGTCCCATCATCAGTGAATATGTTTATTTTTAGGACCTAATTTAAAATTCTGTTTAAGCCGTTGATAAGATTTTGTCGTTTTAATCATGTTTAAACAAGAGTCTGGCTATTTCCATCAAGATTAACTATAGATGTGCCCTGTCACATGTCACACTTCACCAAAAATAGGGGTCAGGCTCGGAAAATCGTAAATATTTTTTGATTCTAGGGCCTAAATCAAAATTTTGTTCAAGCCGTTGATAAGATTATGTTCTTCTGATTATGTTAAAAATAAGTTTGGCAGTTTCTATCAAGTTTAACTATAGATGTGTCCTGTCACATGTCAAAATTTTGCTTTTTTCAAGATGATGATTTTAAGAAATAGTACGGCATTTGAAAAATTGATTTTGCATGTCGCAAGATTCTATTTCAAACACTCTAGGCAAACCATACGCAAGTAAAAATCACAAAAACAAGTATGCCCCTCACCATTCTTTGAATTCGAGGGCAACGAWTTCAAAGAAGCCAAGTGCCAAAATTGATATTTTTGGCATAACTTGTGTAAGCATGATTTCCCCCGAGGTATTGATATGTTTCTATAGTAAATCAAATGTGCTAAATTCAATGGTCATAATGAAAAGAAAAGTTAACCTAGGATTTTTGAGATATTGAAAATTTTTTTGATTTTTTCAAAAAATCAAAAATCCAATCAATAGGAAAAAAAATTGATAAATTTTATTTTCAAATGTTCAATCAATTGTATATTTACTGTTTTTTGAATTTCAACAAACTGACATAAACTGACAAAGTTATGATTTTTTGCAAATTTAGGCATTTTTTGGTACTTTTTGGACCATTACTCCCAAAAGAAATTTTTACCAACTATTCCGTTTGGAATCTAAAATAACTTTTTACGCTCTATCCAACCATATATATAGGTCTCGATTTTTTTCGAGGGTAACACTTGGGAGTCATTCCATGTAAATGTGTTAATGTCTCATTTCTGCACACTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>175 151 145 106 105 58 55 51 47 46 46 15</canonical_bands>
                <polymorphic_bands>175 151 145 120 106 58 55 51 47 46 46</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>502 483 15</canonical_bands>
                <polymorphic_bands>517 483</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>175 145 106 99 82 55 52 50 46 46 44 24 23 23 15 8 7</canonical_bands>
                <polymorphic_bands>175 145 106 99 82 55 52 50 46 46 44 38 24 23 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCACAAAAACAAGTATGC</pcr_primer_p1>
		<pcr_primer_p2>GCAGAAATGAGACATTAACACAT</pcr_primer_p2>
		<pcr_amplicon_size>548</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCACAAAAACAAGTATGCCCCTCACCATTCTTTGAATTCGAGGGCAACGAATTCAAAGAAGCCAAGTGCCAAAATTGATATTTTTGGCATAACTTGTGTAAGCATGATTTCCCCCGAGGTATTGATATGTTTCTATAGTAAATCAAATGTGCTAAATTCAATGGTCATAATGAAAAGAAAAGTTAACCTAGGATTTTTGAGATATTGAAAATTTTTTTGATTTTTTCAAAAAATCAAAAATCCAATCAATAGGAAAAAAAATTGATAAATTTTATTTTCAAATGTTCAATCAATTGTATATTTACTGTTTTTTGAATTTCAACAAACTGACATAAACTGACAAAGTTATGATTTTTTGCAAATTTAGGCATTTTTTGGTACTTTTTGGACCATTACTCCCAAAAGAAATTTTTACCAACTATTCCGTTTGGAATCTAAAATAACTTTTTACGCTCTATCCAACCATATATATAGGTCTCGATTTTTTTCGAGGGTAACACTTGGGAGTCATTCCATGTAAATGTGTTAATGTCTCATTTCTGC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCACAAAAACAAGTATGCCCCTCACCATTCTTTGAATTCGAGGGCAACGAWTTCAAAGAAGCCAAGTGCCAAAATTGATATTTTTGGCATAACTTGTGTAAGCATGATTTCCCCCGAGGTATTGATATGTTTCTATAGTAAATCAAATGTGCTAAATTCAATGGTCATAATGAAAAGAAAAGTTAACCTAGGATTTTTGAGATATTGAAAATTTTTTTGATTTTTTCAAAAAATCAAAAATCCAATCAATAGGAAAAAAAATTGATAAATTTTATTTTCAAATGTTCAATCAATTGTATATTTACTGTTTTTTGAATTTCAACAAACTGACATAAACTGACAAAGTTATGATTTTTTGCAAATTTAGGCATTTTTTGGTACTTTTTGGACCATTACTCCCAAAAGAAATTTTTACCAACTATTCCGTTTGGAATCTAAAATAACTTTTTACGCTCTATCCAACCATATATATAGGTCTCGATTTTTTTCGAGGGTAACACTTGGGAGTCATTCCATGTAAATGTGTTAATGTCTCATTTCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38033</snp_id>
        <super_contig>c012601094.Contig2</super_contig>
        <contig_pos>4241</contig_pos>
        <strand></strand>
        <context>gtattgatat[G/A]tttctatagt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TATTTTTGGCATAACTTGTGTAAGCATGATTTCCCCCGAGGTATTGATAT</left_flank>
        <right_flank>TTTCTATAGTAAATCAAATGTGCTAAATTCAATGGTCATAATGAAAAGAA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTCGTTTTAATCATGTTTAAACAAGAGTCTGGCTATTTCCATCAAGATTAACTATAGATGTGCCCTGTCACATGTCACACTTCACCAAAAATAGGGGTCAGGCTCGGAAAATCGTAAATATTTTTTGATTCTAGGGCCTAAATCAAAATTTTGTTCAAGCCGTTGATAAGATTATGTTCTTCTGATTATGTTAAAAATAAGTTTGGCAGTTTCTATCAAGTTTAACTATAGATGTGTCCTGTCACATGTCAAAATTTTGCTTTTTTCAAGATGATGATTTTAAGAAATAGTACGGCATTTGAAAAATTGATTTTGCATGTCGCAAGATTCTATTTCAAACACTCTAGGCAAACCATACGCAAGTAAAAATCACAAAAACAAGTATGCCCCTCACCATTCTTTGAATTCGAGGGCAACGAATTCAAAGAAGCCAAGTGCCAAAATTGATATTTTTGGCATAACTTGTGTAAGCATGATTTCCCCCGAGGTATTGATATGTTTCTATAGTAAATCAAATGTGCTAAATTCAATGGTCATAATGAAAAGAAAAGTTAACCTAGGATTTTTGAGATATTGAAAATTTTTTTGATTTTTTCAAAAAATCAAAAATCCAATCAATAGGAAAAAAAATTGATAAATTTTATTTTCAAATGTTCAATCAATTGTATATTTACTGTTTTTTGAATTTCAACAAACTGACATAAACTGACAAAGTTATGATTTTTTGCAAATTTAGGCATTTTTTGGTACTTTTTGGACCATTACTCCCAAAAGAAATTTTTACCAACTATTCCGTTTGGAATCTAAAATAACTTTTTACGCTCTATCCAACCATATATATAGGTCTCGATTTTTTTCGAGGGTAACACTTGGGAGTCATTCCATGTAAATGTGTTAATGTCTCATTTCTGCACACTAAATTGAGACTTCTCAAACGGCAGCAGTCCAACTGATCCTCTCATTAGCATTCAAAGAACGATGACAATCGCCGATATTTT</canonical>
            <polymorphic>TTGTCGTTTTAATCATGTTTAAACAAGAGTCTGGCTATTTCCATCAAGATTAACTATAGATGTGCCCTGTCACATGTCACACTTCACCAAAAATAGGGGTCAGGCTCGGAAAATCGTAAATATTTTTTGATTCTAGGGCCTAAATCAAAATTTTGTTCAAGCCGTTGATAAGATTATGTTCTTCTGATTATGTTAAAAATAAGTTTGGCAGTTTCTATCAAGTTTAACTATAGATGTGTCCTGTCACATGTCAAAATTTTGCTTTTTTCAAGATGATGATTTTAAGAAATAGTACGGCATTTGAAAAATTGATTTTGCATGTCGCAAGATTCTATTTCAAACACTCTAGGCAAACCATACGCAAGTAAAAATCACAAAAACAAGTATGCCCCTCACCATTCTTTGAATTCGAGGGCAACGAATTCAAAGAAGCCAAGTGCCAAAATTGATATTTTTGGCATAACTTGTGTAAGCATGATTTCCCCCGAGGTATTGATATRTTTCTATAGTAAATCAAATGTGCTAAATTCAATGGTCATAATGAAAAGAAAAGTTAACCTAGGATTTTTGAGATATTGAAAATTTTTTTGATTTTTTCAAAAAATCAAAAATCCAATCAATAGGAAAAAAAATTGATAAATTTTATTTTCAAATGTTCAATCAATTGTATATTTACTGTTTTTTGAATTTCAACAAACTGACATAAACTGACAAAGTTATGATTTTTTGCAAATTTAGGCATTTTTTGGTACTTTTTGGACCATTACTCCCAAAAGAAATTTTTACCAACTATTCCGTTTGGAATCTAAAATAACTTTTTACGCTCTATCCAACCATATATATAGGTCTCGATTTTTTTCGAGGGTAACACTTGGGAGTCATTCCATGTAAATGTGTTAATGTCTCATTTCTGCACACTAAATTGAGACTTCTCAAACGGCAGCAGTCCAACTGATCCTCTCATTAGCATTCAAAGAACGATGACAATCGCCGATATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCACAAAAACAAGTATGC</pcr_primer_p1>
		<pcr_primer_p2>GCAGAAATGAGACATTAACACAT</pcr_primer_p2>
		<pcr_amplicon_size>548</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCACAAAAACAAGTATGCCCCTCACCATTCTTTGAATTCGAGGGCAACGAATTCAAAGAAGCCAAGTGCCAAAATTGATATTTTTGGCATAACTTGTGTAAGCATGATTTCCCCCGAGGTATTGATATGTTTCTATAGTAAATCAAATGTGCTAAATTCAATGGTCATAATGAAAAGAAAAGTTAACCTAGGATTTTTGAGATATTGAAAATTTTTTTGATTTTTTCAAAAAATCAAAAATCCAATCAATAGGAAAAAAAATTGATAAATTTTATTTTCAAATGTTCAATCAATTGTATATTTACTGTTTTTTGAATTTCAACAAACTGACATAAACTGACAAAGTTATGATTTTTTGCAAATTTAGGCATTTTTTGGTACTTTTTGGACCATTACTCCCAAAAGAAATTTTTACCAACTATTCCGTTTGGAATCTAAAATAACTTTTTACGCTCTATCCAACCATATATATAGGTCTCGATTTTTTTCGAGGGTAACACTTGGGAGTCATTCCATGTAAATGTGTTAATGTCTCATTTCTGC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCACAAAAACAAGTATGCCCCTCACCATTCTTTGAATTCGAGGGCAACGAATTCAAAGAAGCCAAGTGCCAAAATTGATATTTTTGGCATAACTTGTGTAAGCATGATTTCCCCCGAGGTATTGATATRTTTCTATAGTAAATCAAATGTGCTAAATTCAATGGTCATAATGAAAAGAAAAGTTAACCTAGGATTTTTGAGATATTGAAAATTTTTTTGATTTTTTCAAAAAATCAAAAATCCAATCAATAGGAAAAAAAATTGATAAATTTTATTTTCAAATGTTCAATCAATTGTATATTTACTGTTTTTTGAATTTCAACAAACTGACATAAACTGACAAAGTTATGATTTTTTGCAAATTTAGGCATTTTTTGGTACTTTTTGGACCATTACTCCCAAAAGAAATTTTTACCAACTATTCCGTTTGGAATCTAAAATAACTTTTTACGCTCTATCCAACCATATATATAGGTCTCGATTTTTTTCGAGGGTAACACTTGGGAGTCATTCCATGTAAATGTGTTAATGTCTCATTTCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38034</snp_id>
        <super_contig>c012601094.Contig2</super_contig>
        <contig_pos>4389</contig_pos>
        <strand></strand>
        <context>aaattttatt[T/C]tcaaatgttc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAAAAAATCAAAAATCCAATCAATAGGAAAAAAAATTGATAAATTTTATT</left_flank>
        <right_flank>TCAAATGTTCAATCAATTGTATATTTACTGTTTTTTGAATTTCAACAAAC</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTGTTCAAGCCGTTGATAAGATTATGTTCTTCTGATTATGTTAAAAATAAGTTTGGCAGTTTCTATCAAGTTTAACTATAGATGTGTCCTGTCACATGTCAAAATTTTGCTTTTTTCAAGATGATGATTTTAAGAAATAGTACGGCATTTGAAAAATTGATTTTGCATGTCGCAAGATTCTATTTCAAACACTCTAGGCAAACCATACGCAAGTAAAAATCACAAAAACAAGTATGCCCCTCACCATTCTTTGAATTCGAGGGCAACGAATTCAAAGAAGCCAAGTGCCAAAATTGATATTTTTGGCATAACTTGTGTAAGCATGATTTCCCCCGAGGTATTGATATGTTTCTATAGTAAATCAAATGTGCTAAATTCAATGGTCATAATGAAAAGAAAAGTTAACCTAGGATTTTTGAGATATTGAAAATTTTTTTGATTTTTTCAAAAAATCAAAAATCCAATCAATAGGAAAAAAAATTGATAAATTTTATTTTCAAATGTTCAATCAATTGTATATTTACTGTTTTTTGAATTTCAACAAACTGACATAAACTGACAAAGTTATGATTTTTTGCAAATTTAGGCATTTTTTGGTACTTTTTGGACCATTACTCCCAAAAGAAATTTTTACCAACTATTCCGTTTGGAATCTAAAATAACTTTTTACGCTCTATCCAACCATATATATAGGTCTCGATTTTTTTCGAGGGTAACACTTGGGAGTCATTCCATGTAAATGTGTTAATGTCTCATTTCTGCACACTAAATTGAGACTTCTCAAACGGCAGCAGTCCAACTGATCCTCTCATTAGCATTCAAAGAACGATGACAATCGCCGATATTTTTTACACGCGCAGGTGGGTCTGTGACAGACAGCTCGTCTCGTATTACGCGACTGTCAAGCAGTCAAACGATACCTTACAACGATTGGGATTAACCTGAACGAGACTAACTTTCAGCGAAAAAATGACTTGCGATTTCTGTCATATATAA</canonical>
            <polymorphic>AATTTTGTTCAAGCCGTTGATAAGATTATGTTCTTCTGATTATGTTAAAAATAAGTTTGGCAGTTTCTATCAAGTTTAACTATAGATGTGTCCTGTCACATGTCAAAATTTTGCTTTTTTCAAGATGATGATTTTAAGAAATAGTACGGCATTTGAAAAATTGATTTTGCATGTCGCAAGATTCTATTTCAAACACTCTAGGCAAACCATACGCAAGTAAAAATCACAAAAACAAGTATGCCCCTCACCATTCTTTGAATTCGAGGGCAACGAATTCAAAGAAGCCAAGTGCCAAAATTGATATTTTTGGCATAACTTGTGTAAGCATGATTTCCCCCGAGGTATTGATATGTTTCTATAGTAAATCAAATGTGCTAAATTCAATGGTCATAATGAAAAGAAAAGTTAACCTAGGATTTTTGAGATATTGAAAATTTTTTTGATTTTTTCAAAAAATCAAAAATCCAATCAATAGGAAAAAAAATTGATAAATTTTATTYTCAAATGTTCAATCAATTGTATATTTACTGTTTTTTGAATTTCAACAAACTGACATAAACTGACAAAGTTATGATTTTTTGCAAATTTAGGCATTTTTTGGTACTTTTTGGACCATTACTCCCAAAAGAAATTTTTACCAACTATTCCGTTTGGAATCTAAAATAACTTTTTACGCTCTATCCAACCATATATATAGGTCTCGATTTTTTTCGAGGGTAACACTTGGGAGTCATTCCATGTAAATGTGTTAATGTCTCATTTCTGCACACTAAATTGAGACTTCTCAAACGGCAGCAGTCCAACTGATCCTCTCATTAGCATTCAAAGAACGATGACAATCGCCGATATTTTTTACACGCGCAGGTGGGTCTGTGACAGACAGCTCGTCTCGTATTACGCGACTGTCAAGCAGTCAAACGATACCTTACAACGATTGGGATTAACCTGAACGAGACTAACTTTCAGCGAAAAAATGACTTGCGATTTCTGTCATATATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCACAAAAACAAGTATGC</pcr_primer_p1>
		<pcr_primer_p2>GCAGAAATGAGACATTAACACAT</pcr_primer_p2>
		<pcr_amplicon_size>548</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCACAAAAACAAGTATGCCCCTCACCATTCTTTGAATTCGAGGGCAACGAATTCAAAGAAGCCAAGTGCCAAAATTGATATTTTTGGCATAACTTGTGTAAGCATGATTTCCCCCGAGGTATTGATATGTTTCTATAGTAAATCAAATGTGCTAAATTCAATGGTCATAATGAAAAGAAAAGTTAACCTAGGATTTTTGAGATATTGAAAATTTTTTTGATTTTTTCAAAAAATCAAAAATCCAATCAATAGGAAAAAAAATTGATAAATTTTATTTTCAAATGTTCAATCAATTGTATATTTACTGTTTTTTGAATTTCAACAAACTGACATAAACTGACAAAGTTATGATTTTTTGCAAATTTAGGCATTTTTTGGTACTTTTTGGACCATTACTCCCAAAAGAAATTTTTACCAACTATTCCGTTTGGAATCTAAAATAACTTTTTACGCTCTATCCAACCATATATATAGGTCTCGATTTTTTTCGAGGGTAACACTTGGGAGTCATTCCATGTAAATGTGTTAATGTCTCATTTCTGC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCACAAAAACAAGTATGCCCCTCACCATTCTTTGAATTCGAGGGCAACGAATTCAAAGAAGCCAAGTGCCAAAATTGATATTTTTGGCATAACTTGTGTAAGCATGATTTCCCCCGAGGTATTGATATGTTTCTATAGTAAATCAAATGTGCTAAATTCAATGGTCATAATGAAAAGAAAAGTTAACCTAGGATTTTTGAGATATTGAAAATTTTTTTGATTTTTTCAAAAAATCAAAAATCCAATCAATAGGAAAAAAAATTGATAAATTTTATTYTCAAATGTTCAATCAATTGTATATTTACTGTTTTTTGAATTTCAACAAACTGACATAAACTGACAAAGTTATGATTTTTTGCAAATTTAGGCATTTTTTGGTACTTTTTGGACCATTACTCCCAAAAGAAATTTTTACCAACTATTCCGTTTGGAATCTAAAATAACTTTTTACGCTCTATCCAACCATATATATAGGTCTCGATTTTTTTCGAGGGTAACACTTGGGAGTCATTCCATGTAAATGTGTTAATGTCTCATTTCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38035</snp_id>
        <super_contig>c012601397.Contig1</super_contig>
        <contig_pos>46457</contig_pos>
        <strand>+</strand>
        <context>ATGCAATAAA[A/C]ATTTTTGGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAATAATATTTGAAAAATATATAAATGTTAACACATTTTAATGCAATAAA</left_flank>
        <right_flank>ATTTTTGGTCGGAGTCCCCCTTTAAAATCCAAAAGAAATTGAACTCCCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTGTCGTGTCGACTCGTGGTCTAGAAAACCAAAATTGCAAAAGTTAGGCCATCACTATAAAATGAACTAGAAAACACACCAGCGTCATGTCAGTGCATTTTTGGCCATTTTGAAGTGGTGGCCTAGAAAAAACCAGAATTGCAAAAGTTAGGCCACCACTATAAAATGACTTAGAAAACACACCAGGGTCATGCCAGGGCATTATTAGGCCATTTTGAAGTGATGACCTAACTTTTGCGTTTTTTGTTTNNNNNNNNNNGTACTTCCCTTTTCTTTTATAAAAATCTTCCCGAGGTCAATGGGACAGAAAAAAATTATATTCAATTTTACGTATTTTACGTATTGTTTTCCTTTTTATGCCACGTGGATTTTTTCATTCCCAATTTTTTTCACTTCTTTTGAATAGGTAGATTTTAGGGCAATTTGGATAATCTTTGAATGTTCTCGCAATAATATTTGAAAAATATATAAATGTTAACACATTTTAATGCAATAAACATTTTTGGTCGGAGTCCCCCTTTAAAATCCAAAAGAAATTGAACTCCCTCCAAAAACTGTCGTTCAATAGAGTGCGTTTGAAATGGCGTGTCGTGTCGTGTCGAGTCGATTCGATTCGACACGACAGTTGAGTCGACACGACACGAGTCGACACGGCACGCGAGTCGACACGAGTCGACTTGCGTCGATACGATTTTTCAGATATTTTTCACTTGTGTCGATACGACTCTGTGTCGACACGTTACTCTACTTGGTGCTGCAACATGGCGCATCGACCGGAATCGAATCCTGACCGTCCGCATGACAAATCCTAACACTGATCCACCAAGGTCGGAGCTAGATCTGGAACCAGCAGACAACGGCATATAATGGGAAATAGAAGATTTAGAAACAGTCGAATTGGAACCGAAATCAGACAATTCATGCAGTGCGATGGTCGACGAGATGGTTCAGACTGAAAATAAGAAAAACAAATCATTGATCTTACCATTTCGTTTTGA</canonical>
            <polymorphic>TCGTGTCGTGTCGACTCGTGGTCTAGAAAACCAAAATTGCAAAAGTTAGGCCATCACTATAAAATGAACTAGAAAACACACCAGCGTCATGTCAGTGCATTTTTGGCCATTTTGAAGTGGTGGCCTAGAAAAAACCAGAATTGCAAAAGTTAGGCCACCACTATAAAATGACTTAGAAAACACACCAGGGTCATGCCAGGGCATTATTAGGCCATTTTGAAGTGATGACCTAACTTTTGCGTTTTTTGTTTNNNNNNNNNNGTACTTCCCTTTTCTTTTATAAAAATCTTCCCGAGGTCAATGGGACAGAAAAAAATTATATTCAATTTTACGTATTTTACGTATTGTTTTCCTTTTTATGCCACGTGGATTTTTTCATTCCCAATTTTTTTCACTTCTTTTGAATAGGTAGATTTTAGGGCAATTTGGATAATCTTTGAATGTTCTCGCAATAATATTTGAAAAATATATAAATGTTAACACATTTTAATGCAATAAAMATTTTTGGTCGGAGTCCCCCTTTAAAATCCAAAAGAAATTGAACTCCCTCCAAAAACTGTCGTTCAATAGAGTGCGTTTGAAATGGCGTGTCGTGTCGTGTCGAGTCGATTCGATTCGACACGACAGTTGAGTCGACACGACACGAGTCGACACGGCACGCGAGTCGACACGAGTCGACTTGCGTCGATACGATTTTTCAGATATTTTTCACTTGTGTCGATACGACTCTGTGTCGACACGTTACTCTACTTGGTGCTGCAACATGGCGCATCGACCGGAATCGAATCCTGACCGTCCGCATGACAAATCCTAACACTGATCCACCAAGGTCGGAGCTAGATCTGGAACCAGCAGACAACGGCATATAATGGGAAATAGAAGATTTAGAAACAGTCGAATTGGAACCGAAATCAGACAATTCATGCAGTGCGATGGTCGACGAGATGGTTCAGACTGAAAATAAGAAAAACAAATCATTGATCTTACCATTTCGTTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTACGTATTGTTTTCCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CACTCTATTGAACGACAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>TTTTACGTATTGTTTTCCTTTTTATGCCACGTGGATTTTTTCATTCCCAATTTTTTTCACTTCTTTTGAATAGGTAGATTTTAGGGCAATTTGGATAATCTTTGAATGTTCTCGCAATAATATTTGAAAAATATATAAATGTTAACACATTTTAATGCAATAAACATTTTTGGTCGGAGTCCCCCTTTAAAATCCAAAAGAAATTGAACTCCCTCCAAAAACTGTCGTTCAATAGAGTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTACGTATTGTTTTCCTTTTTATGCCACGTGGATTTTTTCATTCCCAATTTTTTTCACTTCTTTTGAATAGGTAGATTTTAGGGCAATTTGGATAATCTTTGAATGTTCTCGCAATAATATTTGAAAAATATATAAATGTTAACACATTTTAATGCAATAAAMATTTTTGGTCGGAGTCCCCCTTTAAAATCCAAAAGAAATTGAACTCCCTCCAAAAACTGTCGTTCAATAGAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38036</snp_id>
        <super_contig>c012601397.Contig1</super_contig>
        <contig_pos>46486</contig_pos>
        <strand>+</strand>
        <context>CCTTTAAAAT[C/T]CAAAAGAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACACATTTTAATGCAATAAACATTTTTGGTCGGAGTCCCCCTTTAAAAT</left_flank>
        <right_flank>CAAAAGAAATTGAACTCCCTCCAAAAACTGTCGTTCAATAGAGTGCGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAAAATTGCAAAAGTTAGGCCATCACTATAAAATGAACTAGAAAACACACCAGCGTCATGTCAGTGCATTTTTGGCCATTTTGAAGTGGTGGCCTAGAAAAAACCAGAATTGCAAAAGTTAGGCCACCACTATAAAATGACTTAGAAAACACACCAGGGTCATGCCAGGGCATTATTAGGCCATTTTGAAGTGATGACCTAACTTTTGCGTTTTTTGTTTNNNNNNNNNNGTACTTCCCTTTTCTTTTATAAAAATCTTCCCGAGGTCAATGGGACAGAAAAAAATTATATTCAATTTTACGTATTTTACGTATTGTTTTCCTTTTTATGCCACGTGGATTTTTTCATTCCCAATTTTTTTCACTTCTTTTGAATAGGTAGATTTTAGGGCAATTTGGATAATCTTTGAATGTTCTCGCAATAATATTTGAAAAATATATAAATGTTAACACATTTTAATGCAATAAACATTTTTGGTCGGAGTCCCCCTTTAAAATCCAAAAGAAATTGAACTCCCTCCAAAAACTGTCGTTCAATAGAGTGCGTTTGAAATGGCGTGTCGTGTCGTGTCGAGTCGATTCGATTCGACACGACAGTTGAGTCGACACGACACGAGTCGACACGGCACGCGAGTCGACACGAGTCGACTTGCGTCGATACGATTTTTCAGATATTTTTCACTTGTGTCGATACGACTCTGTGTCGACACGTTACTCTACTTGGTGCTGCAACATGGCGCATCGACCGGAATCGAATCCTGACCGTCCGCATGACAAATCCTAACACTGATCCACCAAGGTCGGAGCTAGATCTGGAACCAGCAGACAACGGCATATAATGGGAAATAGAAGATTTAGAAACAGTCGAATTGGAACCGAAATCAGACAATTCATGCAGTGCGATGGTCGACGAGATGGTTCAGACTGAAAATAAGAAAAACAAATCATTGATCTTACCATTTCGTTTTGAAACTAAATAAAATAAATGATGGAATGTTT</canonical>
            <polymorphic>ACCAAAATTGCAAAAGTTAGGCCATCACTATAAAATGAACTAGAAAACACACCAGCGTCATGTCAGTGCATTTTTGGCCATTTTGAAGTGGTGGCCTAGAAAAAACCAGAATTGCAAAAGTTAGGCCACCACTATAAAATGACTTAGAAAACACACCAGGGTCATGCCAGGGCATTATTAGGCCATTTTGAAGTGATGACCTAACTTTTGCGTTTTTTGTTTNNNNNNNNNNGTACTTCCCTTTTCTTTTATAAAAATCTTCCCGAGGTCAATGGGACAGAAAAAAATTATATTCAATTTTACGTATTTTACGTATTGTTTTCCTTTTTATGCCACGTGGATTTTTTCATTCCCAATTTTTTTCACTTCTTTTGAATAGGTAGATTTTAGGGCAATTTGGATAATCTTTGAATGTTCTCGCAATAATATTTGAAAAATATATAAATGTTAACACATTTTAATGCAATAAACATTTTTGGTCGGAGTCCCCCTTTAAAATYCAAAAGAAATTGAACTCCCTCCAAAAACTGTCGTTCAATAGAGTGCGTTTGAAATGGCGTGTCGTGTCGTGTCGAGTCGATTCGATTCGACACGACAGTTGAGTCGACACGACACGAGTCGACACGGCACGCGAGTCGACACGAGTCGACTTGCGTCGATACGATTTTTCAGATATTTTTCACTTGTGTCGATACGACTCTGTGTCGACACGTTACTCTACTTGGTGCTGCAACATGGCGCATCGACCGGAATCGAATCCTGACCGTCCGCATGACAAATCCTAACACTGATCCACCAAGGTCGGAGCTAGATCTGGAACCAGCAGACAACGGCATATAATGGGAAATAGAAGATTTAGAAACAGTCGAATTGGAACCGAAATCAGACAATTCATGCAGTGCGATGGTCGACGAGATGGTTCAGACTGAAAATAAGAAAAACAAATCATTGATCTTACCATTTCGTTTTGAAACTAAATAAAATAAATGATGGAATGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTACGTATTGTTTTCCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CATTTCAAACGCACTCTATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTACGTATTGTTTTCCTTTTTATGCCACGTGGATTTTTTCATTCCCAATTTTTTTCACTTCTTTTGAATAGGTAGATTTTAGGGCAATTTGGATAATCTTTGAATGTTCTCGCAATAATATTTGAAAAATATATAAATGTTAACACATTTTAATGCAATAAACATTTTTGGTCGGAGTCCCCCTTTAAAATCCAAAAGAAATTGAACTCCCTCCAAAAACTGTCGTTCAATAGAGTGCGTTTGAAATG</canonical_amplicon>
		<polymorphic_amplicon>TTTTACGTATTGTTTTCCTTTTTATGCCACGTGGATTTTTTCATTCCCAATTTTTTTCACTTCTTTTGAATAGGTAGATTTTAGGGCAATTTGGATAATCTTTGAATGTTCTCGCAATAATATTTGAAAAATATATAAATGTTAACACATTTTAATGCAATAAACATTTTTGGTCGGAGTCCCCCTTTAAAATYCAAAAGAAATTGAACTCCCTCCAAAAACTGTCGTTCAATAGAGTGCGTTTGAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38037</snp_id>
        <super_contig>c012601397.Contig1</super_contig>
        <contig_pos>47387</contig_pos>
        <strand></strand>
        <context>aaaaatcaaa[T/A]tttCAGATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTGAGAATTTTAACATTTTAAAGAATTTTTTGAATTTTTAAAAAATCAAA</left_flank>
        <right_flank>TTTCAGATTTTTAGGATTTTTTCATTATTTTTTGTTTTTCGATTCTCCAG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATGGTCGACGAGATGGTTCAGACTGAAAATAAGAAAAACAAATCATTGATCTTACCATTTCGTTTTGAAACTAAATAAAATAAATGATGGAATGTTTGTTAATTTTTTTTTCACAATTTTTTAAATTTTTTCTTGGGAACCACTTTCTGTTCTATTTTTCAGATTTTTCAGAATTTTTGAATTTTATGATTTTTTTTTCAGAGTTTTCAAATTGTTTGGAACGTTTTGAAAAAGTTTCTTTCATTGGAATGTGTTATTTTTCATTGAAAAATGTGAAAAATTGAACTTTTGAATTTTTCAGAAAATTTCAGATACGAATTTTAAACATTTTTCCAGAATTTAAAACTTTAAATTTTTTTAACAGTATTTTTCGAATTTTCAGATTTTAAAAAGATTTTTCAGTAATGAAAATTTCATTGATTTTTGAAATCTAAACATTTTCAAAATTTGAGAATTTTAACATTTTAAAGAATTTTTTGAATTTTTAAAAAATCAAATTTTCAGATTTTTAGGATTTTTTCATTATTTTTTGTTTTTCGATTCTCCAGAATTTTCTGAATGTTTCAATTTTTTTTTGAAGAATCTTTCTGCAAAATTCTTCGAACTTTTCCGAATTGTTGTTTATTTCCAACATTATTGATTTTCTAAATCTCTTCTAATCTCTTTCTCTTCCAATCGCTCTGCCAACTGACCACCACCTGCTCCCAGCAGAAACATTTCTTCCCCTCCATATTTCTCTAATTCTCTTCCTCCCCAGCACTCTCTCGCCCCGTCCATCTGGCATTATTCTATCGCACCGACCCTTCGTCCACCCTCTCGTCTCTCCCTCTTTTTCTCTGCGTCTCCTCTCCCTCCACACTCTTTTCCTCTCCCTGTCTGCCACCCTCCATCACCCACACACACTCTCTCTCTCTTCTTCTTCTTCTTTTGCCGTTTCCAATAACAAATGTATGGAAAACGTCAGCTTTTGGCCCAAAATCTATTTTTTTGCTTATTTT</canonical>
            <polymorphic>CGATGGTCGACGAGATGGTTCAGACTGAAAATAAGAAAAACAAATCATTGATCTTACCATTTCGTTTTGAAACTAAATAAAATAAATGATGGAATGTTTGTTAATTTTTTTTTCACAATTTTTTAAATTTTTTCTTGGGAACCACTTTCTGTTCTATTTTTCAGATTTTTCAGAATTTTTGAATTTTATGATTTTTTTTTCAGAGTTTTCAAATTGTTTGGAACGTTTTGAAAAAGTTTCTTTCATTGGAATGTGTTATTTTTCATTGAAAAATGTGAAAAATTGAACTTTTGAATTTTTCAGAAAATTTCAGATACGAATTTTAAACATTTTTCCAGAATTTAAAACTTTAAATTTTTTTAACAGTATTTTTCGAATTTTCAGATTTTAAAAAGATTTTTCAGTAATGAAAATTTCATTGATTTTTGAAATCTAAACATTTTCAAAATTTGAGAATTTTAACATTTTAAAGAATTTTTTGAATTTTTAAAAAATCAAAWTTTCAGATTTTTAGGATTTTTTCATTATTTTTTGTTTTTCGATTCTCCAGAATTTTCTGAATGTTTCAATTTTTTTTTGAAGAATCTTTCTGCAAAATTCTTCGAACTTTTCCGAATTGTTGTTTATTTCCAACATTATTGATTTTCTAAATCTCTTCTAATCTCTTTCTCTTCCAATCGCTCTGCCAACTGACCACCACCTGCTCCCAGCAGAAACATTTCTTCCCCTCCATATTTCTCTAATTCTCTTCCTCCCCAGCACTCTCTCGCCCCGTCCATCTGGCATTATTCTATCGCACCGACCCTTCGTCCACCCTCTCGTCTCTCCCTCTTTTTCTCTGCGTCTCCTCTCCCTCCACACTCTTTTCCTCTCCCTGTCTGCCACCCTCCATCACCCACACACACTCTCTCTCTCTTCTTCTTCTTCTTTTGCCGTTTCCAATAACAAATGTATGGAAAACGTCAGCTTTTGGCCCAAAATCTATTTTTTTGCTTATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>405 125 112 53 48 45 36 35 23 20 18 16 14 13 12 9 8 8</canonical_bands>
                <polymorphic_bands>405 125 112 69 48 45 36 35 23 20 18 14 13 12 9 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>259 127 102 69 53 48 36 35 30 28 23 20 19 18 17 16 14 14 13 13 12 9 9 8 8</canonical_bands>
                <polymorphic_bands>259 127 102 69 69 48 36 35 30 28 23 20 19 18 17 14 14 13 13 12 9 9 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAATTTTCAGATTTTAAAAAGA</pcr_primer_p1>
		<pcr_primer_p2>AATAAACAACAATTCGGAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>CGAATTTTCAGATTTTAAAAAGATTTTTCAGTAATGAAAATTTCATTGATTTTTGAAATCTAAACATTTTCAAAATTTGAGAATTTTAACATTTTAAAGAATTTTTTGAATTTTTAAAAAATCAAATTTTCAGATTTTTAGGATTTTTTCATTATTTTTTGTTTTTCGATTCTCCAGAATTTTCTGAATGTTTCAATTTTTTTTTGAAGAATCTTTCTGCAAAATTCTTCGAACTTTTCCGAATTGTTGTTTATT</canonical_amplicon>
		<polymorphic_amplicon>CGAATTTTCAGATTTTAAAAAGATTTTTCAGTAATGAAAATTTCATTGATTTTTGAAATCTAAACATTTTCAAAATTTGAGAATTTTAACATTTTAAAGAATTTTTTGAATTTTTAAAAAATCAAAWTTTCAGATTTTTAGGATTTTTTCATTATTTTTTGTTTTTCGATTCTCCAGAATTTTCTGAATGTTTCAATTTTTTTTTGAAGAATCTTTCTGCAAAATTCTTCGAACTTTTCCGAATTGTTGTTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38038</snp_id>
        <super_contig>c012700707.Contig2</super_contig>
        <contig_pos>12476</contig_pos>
        <strand></strand>
        <context>atcacatttt[T/C]agaattcaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTATACTCATTTTAAAGCTCTCCTGAAGCCAAATTACAAAATCACATTTT</left_flank>
        <right_flank>AGAATTCAAAACCTCACCTTTTTCCTGTTTCACACTGGTCGCCAATTGAG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTGAGAGCCCATTTTTCACAAAAACCAACCTTCAAAATTTTATAGTTTTTTTTAAAAATTTCAACACCAAAAAAGCATTTTGTGCGATCTTTAGTGTCAGTAGTAAAATGGCACTTTAAGCACATGGTTTCCATTTTTCACTGATAACGGAAAATGTTATTTTGTAGCGATTTTTTGTAGTTGGTGTGATCTTATTGGTAGGGATTGGCGGGAAATTCGAAAAACCTGGAAAATCCAACTTTTTGAACACTAAAAAAATTTTTTAAAATAAGGAAATCTCATTTAACTTGACTCAAATTCAATAAATTTGAATTTATCTTGTTAAGAGCTTCAAAATGAGTATGATCATGACCTTGTTTGGAGCATTTTCCGTTTTTTTTACAAAAACTTTTGGGTCCCACCACGAAAATGTTCCCAAAAAATTTCAAAAACAAAATAGGTCATGTTTATACTCATTTTAAAGCTCTCCTGAAGCCAAATTACAAAATCACATTTTTAGAATTCAAAACCTCACCTTTTTCCTGTTTCACACTGGTCGCCAATTGAGGTGCCATCGAGGCCAGACCGGGTACCACACTGATCACTGATGTGAATGTGGGCATTTTTTGAAGAAACGCCGTAGACATTTACTGGCGGGAGGCGCCGTTATTTCTGGAATTGGCGAAGAATTCAAAGTTTAAAGGGACATACAGTAAGCAAAAAAAATTAAGAGTTAAGGAAGATAAAGCAAAAGAAGCAACAAATTGTATTTGTCAACTTTAAACCAATTTATCTCATTTCCTGTGAAAGATATCAAAAAGCGGCCAACTGACAAAATGTTTATTATAATATCACAAACATATTATCAGTTGACAGATTTTTGATATCTCTTACAGGGTCCAAGATAATTGAGTTCAAAACCGCAAGCAGAGAGCGGCGTTTTACAGTGGTTGCAATCGAGGTTCCGACCGCGTCGCCAAATTATCTCGCTTCCAGTAAAAGATATCAAAAAGTCGCC</canonical>
            <polymorphic>CATTTGAGAGCCCATTTTTCACAAAAACCAACCTTCAAAATTTTATAGTTTTTTTTAAAAATTTCAACACCAAAAAAGCATTTTGTGCGATCTTTAGTGTCAGTAGTAAAATGGCACTTTAAGCACATGGTTTCCATTTTTCACTGATAACGGAAAATGTTATTTTGTAGCGATTTTTTGTAGTTGGTGTGATCTTATTGGTAGGGATTGGCGGGAAATTCGAAAAACCTGGAAAATCCAACTTTTTGAACACTAAAAAAATTTTTTAAAATAAGGAAATCTCATTTAACTTGACTCAAATTCAATAAATTTGAATTTATCTTGTTAAGAGCTTCAAAATGAGTATGATCATGACCTTGTTTGGAGCATTTTCCGTTTTTTTTACAAAAACTTTTGGGTCCCACCACGAAAATGTTCCCAAAAAATTTCAAAAACAAAATAGGTCATGTTTATACTCATTTTAAAGCTCTCCTGAAGCCAAATTACAAAATCACATTTTYAGAATTCAAAACCTCACCTTTTTCCTGTTTCACACTGGTCGCCAATTGAGGTGCCATCGAGGCCAGACCGGGTACCACACTGATCACTGATGTGAATGTGGGCATTTTTTGAAGAAACGCCGTAGACATTTACTGGCGGGAGGCGCCGTTATTTCTGGAATTGGCGAAGAATTCAAAGTTTAAAGGGACATACAGTAAGCAAAAAAAATTAAGAGTTAAGGAAGATAAAGCAAAAGAAGCAACAAATTGTATTTGTCAACTTTAAACCAATTTATCTCATTTCCTGTGAAAGATATCAAAAAGCGGCCAACTGACAAAATGTTTATTATAATATCACAAACATATTATCAGTTGACAGATTTTTGATATCTCTTACAGGGTCCAAGATAATTGAGTTCAAAACCGCAAGCAGAGAGCGGCGTTTTACAGTGGTTGCAATCGAGGTTCCGACCGCGTCGCCAAATTATCTCGCTTCCAGTAAAAGATATCAAAAAGTCGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATCCAACTTTTTGAACAC</pcr_primer_p1>
		<pcr_primer_p2>GCTTACTGTATGTCCCTTTAAACT</pcr_primer_p2>
		<pcr_amplicon_size>469</pcr_amplicon_size>
		<canonical_amplicon>GAAAATCCAACTTTTTGAACACTAAAAAAATTTTTTAAAATAAGGAAATCTCATTTAACTTGACTCAAATTCAATAAATTTGAATTTATCTTGTTAAGAGCTTCAAAATGAGTATGATCATGACCTTGTTTGGAGCATTTTCCGTTTTTTTTACAAAAACTTTTGGGTCCCACCACGAAAATGTTCCCAAAAAATTTCAAAAACAAAATAGGTCATGTTTATACTCATTTTAAAGCTCTCCTGAAGCCAAATTACAAAATCACATTTTTAGAATTCAAAACCTCACCTTTTTCCTGTTTCACACTGGTCGCCAATTGAGGTGCCATCGAGGCCAGACCGGGTACCACACTGATCACTGATGTGAATGTGGGCATTTTTTGAAGAAACGCCGTAGACATTTACTGGCGGGAGGCGCCGTTATTTCTGGAATTGGCGAAGAATTCAAAGTTTAAAGGGACATACAGTAAGC</canonical_amplicon>
		<polymorphic_amplicon>GAAAATCCAACTTTTTGAACACTAAAAAAATTTTTTAAAATAAGGAAATCTCATTTAACTTGACTCAAATTCAATAAATTTGAATTTATCTTGTTAAGAGCTTCAAAATGAGTATGATCATGACCTTGTTTGGAGCATTTTCCGTTTTTTTTACAAAAACTTTTGGGTCCCACCACGAAAATGTTCCCAAAAAATTTCAAAAACAAAATAGGTCATGTTTATACTCATTTTAAAGCTCTCCTGAAGCCAAATTACAAAATCACATTTTYAGAATTCAAAACCTCACCTTTTTCCTGTTTCACACTGGTCGCCAATTGAGGTGCCATCGAGGCCAGACCGGGTACCACACTGATCACTGATGTGAATGTGGGCATTTTTTGAAGAAACGCCGTAGACATTTACTGGCGGGAGGCGCCGTTATTTCTGGAATTGGCGAAGAATTCAAAGTTTAAAGGGACATACAGTAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38039</snp_id>
        <super_contig>c012700707.Contig2</super_contig>
        <contig_pos>12601</contig_pos>
        <strand>+</strand>
        <context>AAACGCCGTA[G/T]ACATTTACTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCACACTGATCACTGATGTGAATGTGGGCATTTTTTGAAGAAACGCCGTA</left_flank>
        <right_flank>ACATTTACTGGCGGGAGGCGCCGTTATTTCTGGAATTGGCGAAGAATTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGGTTTCCATTTTTCACTGATAACGGAAAATGTTATTTTGTAGCGATTTTTTGTAGTTGGTGTGATCTTATTGGTAGGGATTGGCGGGAAATTCGAAAAACCTGGAAAATCCAACTTTTTGAACACTAAAAAAATTTTTTAAAATAAGGAAATCTCATTTAACTTGACTCAAATTCAATAAATTTGAATTTATCTTGTTAAGAGCTTCAAAATGAGTATGATCATGACCTTGTTTGGAGCATTTTCCGTTTTTTTTACAAAAACTTTTGGGTCCCACCACGAAAATGTTCCCAAAAAATTTCAAAAACAAAATAGGTCATGTTTATACTCATTTTAAAGCTCTCCTGAAGCCAAATTACAAAATCACATTTTTAGAATTCAAAACCTCACCTTTTTCCTGTTTCACACTGGTCGCCAATTGAGGTGCCATCGAGGCCAGACCGGGTACCACACTGATCACTGATGTGAATGTGGGCATTTTTTGAAGAAACGCCGTAGACATTTACTGGCGGGAGGCGCCGTTATTTCTGGAATTGGCGAAGAATTCAAAGTTTAAAGGGACATACAGTAAGCAAAAAAAATTAAGAGTTAAGGAAGATAAAGCAAAAGAAGCAACAAATTGTATTTGTCAACTTTAAACCAATTTATCTCATTTCCTGTGAAAGATATCAAAAAGCGGCCAACTGACAAAATGTTTATTATAATATCACAAACATATTATCAGTTGACAGATTTTTGATATCTCTTACAGGGTCCAAGATAATTGAGTTCAAAACCGCAAGCAGAGAGCGGCGTTTTACAGTGGTTGCAATCGAGGTTCCGACCGCGTCGCCAAATTATCTCGCTTCCAGTAAAAGATATCAAAAAGTCGCCAACTGATAAAATGTTTGTCATATTATTTTAAATATTTTACTAATTAAAAACTTTTTGATACCTCCTACAGTACCCGAGATAATTGAGCTCATATTTATAGTACCCAGAAAGAACGCATCAAACTA</canonical>
            <polymorphic>CATGGTTTCCATTTTTCACTGATAACGGAAAATGTTATTTTGTAGCGATTTTTTGTAGTTGGTGTGATCTTATTGGTAGGGATTGGCGGGAAATTCGAAAAACCTGGAAAATCCAACTTTTTGAACACTAAAAAAATTTTTTAAAATAAGGAAATCTCATTTAACTTGACTCAAATTCAATAAATTTGAATTTATCTTGTTAAGAGCTTCAAAATGAGTATGATCATGACCTTGTTTGGAGCATTTTCCGTTTTTTTTACAAAAACTTTTGGGTCCCACCACGAAAATGTTCCCAAAAAATTTCAAAAACAAAATAGGTCATGTTTATACTCATTTTAAAGCTCTCCTGAAGCCAAATTACAAAATCACATTTTTAGAATTCAAAACCTCACCTTTTTCCTGTTTCACACTGGTCGCCAATTGAGGTGCCATCGAGGCCAGACCGGGTACCACACTGATCACTGATGTGAATGTGGGCATTTTTTGAAGAAACGCCGTAKACATTTACTGGCGGGAGGCGCCGTTATTTCTGGAATTGGCGAAGAATTCAAAGTTTAAAGGGACATACAGTAAGCAAAAAAAATTAAGAGTTAAGGAAGATAAAGCAAAAGAAGCAACAAATTGTATTTGTCAACTTTAAACCAATTTATCTCATTTCCTGTGAAAGATATCAAAAAGCGGCCAACTGACAAAATGTTTATTATAATATCACAAACATATTATCAGTTGACAGATTTTTGATATCTCTTACAGGGTCCAAGATAATTGAGTTCAAAACCGCAAGCAGAGAGCGGCGTTTTACAGTGGTTGCAATCGAGGTTCCGACCGCGTCGCCAAATTATCTCGCTTCCAGTAAAAGATATCAAAAAGTCGCCAACTGATAAAATGTTTGTCATATTATTTTAAATATTTTACTAATTAAAAACTTTTTGATACCTCCTACAGTACCCGAGATAATTGAGCTCATATTTATAGTACCCAGAAAGAACGCATCAAACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCCTGTTTCACACTGGT</pcr_primer_p1>
		<pcr_primer_p2>AATACAATTTGTTGCTTCTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>TTTTCCTGTTTCACACTGGTCGCCAATTGAGGTGCCATCGAGGCCAGACCGGGTACCACACTGATCACTGATGTGAATGTGGGCATTTTTTGAAGAAACGCCGTAGACATTTACTGGCGGGAGGCGCCGTTATTTCTGGAATTGGCGAAGAATTCAAAGTTTAAAGGGACATACAGTAAGCAAAAAAAATTAAGAGTTAAGGAAGATAAAGCAAAAGAAGCAACAAATTGTATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCCTGTTTCACACTGGTCGCCAATTGAGGTGCCATCGAGGCCAGACCGGGTACCACACTGATCACTGATGTGAATGTGGGCATTTTTTGAAGAAACGCCGTAKACATTTACTGGCGGGAGGCGCCGTTATTTCTGGAATTGGCGAAGAATTCAAAGTTTAAAGGGACATACAGTAAGCAAAAAAAATTAAGAGTTAAGGAAGATAAAGCAAAAGAAGCAACAAATTGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38040</snp_id>
        <super_contig>c012700707.Contig2</super_contig>
        <contig_pos>12651</contig_pos>
        <strand>+</strand>
        <context>CGAAGAATTC[A/G]AAGTTTAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACATTTACTGGCGGGAGGCGCCGTTATTTCTGGAATTGGCGAAGAATTC</left_flank>
        <right_flank>AAGTTTAAAGGGACATACAGTAAGCAAAAAAAATTAAGAGTTAAGGAAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGTAGTTGGTGTGATCTTATTGGTAGGGATTGGCGGGAAATTCGAAAAACCTGGAAAATCCAACTTTTTGAACACTAAAAAAATTTTTTAAAATAAGGAAATCTCATTTAACTTGACTCAAATTCAATAAATTTGAATTTATCTTGTTAAGAGCTTCAAAATGAGTATGATCATGACCTTGTTTGGAGCATTTTCCGTTTTTTTTACAAAAACTTTTGGGTCCCACCACGAAAATGTTCCCAAAAAATTTCAAAAACAAAATAGGTCATGTTTATACTCATTTTAAAGCTCTCCTGAAGCCAAATTACAAAATCACATTTTTAGAATTCAAAACCTCACCTTTTTCCTGTTTCACACTGGTCGCCAATTGAGGTGCCATCGAGGCCAGACCGGGTACCACACTGATCACTGATGTGAATGTGGGCATTTTTTGAAGAAACGCCGTAGACATTTACTGGCGGGAGGCGCCGTTATTTCTGGAATTGGCGAAGAATTCAAAGTTTAAAGGGACATACAGTAAGCAAAAAAAATTAAGAGTTAAGGAAGATAAAGCAAAAGAAGCAACAAATTGTATTTGTCAACTTTAAACCAATTTATCTCATTTCCTGTGAAAGATATCAAAAAGCGGCCAACTGACAAAATGTTTATTATAATATCACAAACATATTATCAGTTGACAGATTTTTGATATCTCTTACAGGGTCCAAGATAATTGAGTTCAAAACCGCAAGCAGAGAGCGGCGTTTTACAGTGGTTGCAATCGAGGTTCCGACCGCGTCGCCAAATTATCTCGCTTCCAGTAAAAGATATCAAAAAGTCGCCAACTGATAAAATGTTTGTCATATTATTTTAAATATTTTACTAATTAAAAACTTTTTGATACCTCCTACAGTACCCGAGATAATTGAGCTCATATTTATAGTACCCAGAAAGAACGCATCAAACTATTTAGCACATGGCTTCTTTTGCACAATGATTAAATTTTTGTTTCCAAAAA</canonical>
            <polymorphic>TTTTGTAGTTGGTGTGATCTTATTGGTAGGGATTGGCGGGAAATTCGAAAAACCTGGAAAATCCAACTTTTTGAACACTAAAAAAATTTTTTAAAATAAGGAAATCTCATTTAACTTGACTCAAATTCAATAAATTTGAATTTATCTTGTTAAGAGCTTCAAAATGAGTATGATCATGACCTTGTTTGGAGCATTTTCCGTTTTTTTTACAAAAACTTTTGGGTCCCACCACGAAAATGTTCCCAAAAAATTTCAAAAACAAAATAGGTCATGTTTATACTCATTTTAAAGCTCTCCTGAAGCCAAATTACAAAATCACATTTTTAGAATTCAAAACCTCACCTTTTTCCTGTTTCACACTGGTCGCCAATTGAGGTGCCATCGAGGCCAGACCGGGTACCACACTGATCACTGATGTGAATGTGGGCATTTTTTGAAGAAACGCCGTAGACATTTACTGGCGGGAGGCGCCGTTATTTCTGGAATTGGCGAAGAATTCRAAGTTTAAAGGGACATACAGTAAGCAAAAAAAATTAAGAGTTAAGGAAGATAAAGCAAAAGAAGCAACAAATTGTATTTGTCAACTTTAAACCAATTTATCTCATTTCCTGTGAAAGATATCAAAAAGCGGCCAACTGACAAAATGTTTATTATAATATCACAAACATATTATCAGTTGACAGATTTTTGATATCTCTTACAGGGTCCAAGATAATTGAGTTCAAAACCGCAAGCAGAGAGCGGCGTTTTACAGTGGTTGCAATCGAGGTTCCGACCGCGTCGCCAAATTATCTCGCTTCCAGTAAAAGATATCAAAAAGTCGCCAACTGATAAAATGTTTGTCATATTATTTTAAATATTTTACTAATTAAAAACTTTTTGATACCTCCTACAGTACCCGAGATAATTGAGCTCATATTTATAGTACCCAGAAAGAACGCATCAAACTATTTAGCACATGGCTTCTTTTGCACAATGATTAAATTTTTGTTTCCAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCCTGTTTCACACTGGT</pcr_primer_p1>
		<pcr_primer_p2>AATACAATTTGTTGCTTCTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>TTTTCCTGTTTCACACTGGTCGCCAATTGAGGTGCCATCGAGGCCAGACCGGGTACCACACTGATCACTGATGTGAATGTGGGCATTTTTTGAAGAAACGCCGTAGACATTTACTGGCGGGAGGCGCCGTTATTTCTGGAATTGGCGAAGAATTCAAAGTTTAAAGGGACATACAGTAAGCAAAAAAAATTAAGAGTTAAGGAAGATAAAGCAAAAGAAGCAACAAATTGTATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTCCTGTTTCACACTGGTCGCCAATTGAGGTGCCATCGAGGCCAGACCGGGTACCACACTGATCACTGATGTGAATGTGGGCATTTTTTGAAGAAACGCCGTAGACATTTACTGGCGGGAGGCGCCGTTATTTCTGGAATTGGCGAAGAATTCRAAGTTTAAAGGGACATACAGTAAGCAAAAAAAATTAAGAGTTAAGGAAGATAAAGCAAAAGAAGCAACAAATTGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38041</snp_id>
        <super_contig>c012700707.Contig2</super_contig>
        <contig_pos>13045</contig_pos>
        <strand>+</strand>
        <context>tacctcctac[G/T]gtacccgaga</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATATTATTTTAAATATTTTACTAATTAAAAACTTTTTGATACCTCCTAC</left_flank>
        <right_flank>GTACCCGAGATAATTGAGCTCATATTTATAGTACCCAGAAAGAACGCATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGTACCACACTGATCACTGATGTGAATGTGGGCATTTTTTGAAGAAACGCCGTAGACATTTACTGGCGGGAGGCGCCGTTATTTCTGGAATTGGCGAAGAATTCAAAGTTTAAAGGGACATACAGTAAGCAAAAAAAATTAAGAGTTAAGGAAGATAAAGCAAAAGAAGCAACAAATTGTATTTGTCAACTTTAAACCAATTTATCTCATTTCCTGTGAAAGATATCAAAAAGCGGCCAACTGACAAAATGTTTATTATAATATCACAAACATATTATCAGTTGACAGATTTTTGATATCTCTTACAGGGTCCAAGATAATTGAGTTCAAAACCGCAAGCAGAGAGCGGCGTTTTACAGTGGTTGCAATCGAGGTTCCGACCGCGTCGCCAAATTATCTCGCTTCCAGTAAAAGATATCAAAAAGTCGCCAACTGATAAAATGTTTGTCATATTATTTTAAATATTTTACTAATTAAAAACTTTTTGATACCTCCTACAGTACCCGAGATAATTGAGCTCATATTTATAGTACCCAGAAAGAACGCATCAAACTATTTAGCACATGGCTTCTTTTGCACAATGATTAAATTTTTGTTTCCAAAAAATGCTTCCAACACAAATATACATACACAAAACTATTCTGATAGATAGCAATAGGCGAATGTTCAATTATCAGTTGTGGTGGTGGTCACGGGGGGAGAATCGAGGACGGAATGTGATAGGAAGAGAGGGTGAGAGACCCAGAGAAACACAGATCATCGTGACAATCTCTGATACACACTTTTACACTATATTCTCATGCCACAAACACGTTGTGTTGCGAAAAATGGACGGAGAACAAGTATAACGATAGTGTGTGTGTGTGATCATGGTTTTTTGAAGATGAATTTTTTGATGGGAAAGAATACTGGGGTATATCATAATGGAAAAAATTTGTCAAGTTCTTAGCTTCAGAATGAGCCTAAACACGACGCGATTCGTATAACTATGAATTTCGG</canonical>
            <polymorphic>GGGTACCACACTGATCACTGATGTGAATGTGGGCATTTTTTGAAGAAACGCCGTAGACATTTACTGGCGGGAGGCGCCGTTATTTCTGGAATTGGCGAAGAATTCAAAGTTTAAAGGGACATACAGTAAGCAAAAAAAATTAAGAGTTAAGGAAGATAAAGCAAAAGAAGCAACAAATTGTATTTGTCAACTTTAAACCAATTTATCTCATTTCCTGTGAAAGATATCAAAAAGCGGCCAACTGACAAAATGTTTATTATAATATCACAAACATATTATCAGTTGACAGATTTTTGATATCTCTTACAGGGTCCAAGATAATTGAGTTCAAAACCGCAAGCAGAGAGCGGCGTTTTACAGTGGTTGCAATCGAGGTTCCGACCGCGTCGCCAAATTATCTCGCTTCCAGTAAAAGATATCAAAAAGTCGCCAACTGATAAAATGTTTGTCATATTATTTTAAATATTTTACTAATTAAAAACTTTTTGATACCTCCTACKGTACCCGAGATAATTGAGCTCATATTTATAGTACCCAGAAAGAACGCATCAAACTATTTAGCACATGGCTTCTTTTGCACAATGATTAAATTTTTGTTTCCAAAAAATGCTTCCAACACAAATATACATACACAAAACTATTCTGATAGATAGCAATAGGCGAATGTTCAATTATCAGTTGTGGTGGTGGTCACGGGGGGAGAATCGAGGACGGAATGTGATAGGAAGAGAGGGTGAGAGACCCAGAGAAACACAGATCATCGTGACAATCTCTGATACACACTTTTACACTATATTCTCATGCCACAAACACGTTGTGTTGCGAAAAATGGACGGAGAACAAGTATAACGATAGTGTGTGTGTGTGATCATGGTTTTTTGAAGATGAATTTTTTGATGGGAAAGAATACTGGGGTATATCATAATGGAAAAAATTTGTCAAGTTCTTAGCTTCAGAATGAGCCTAAACACGACGCGATTCGTATAACTATGAATTTCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAGGAAGATAAAGCAAAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>GCTAAATAGTTTGATGCGTTCT</pcr_primer_p2>
		<pcr_amplicon_size>415</pcr_amplicon_size>
		<canonical_amplicon>TAAGGAAGATAAAGCAAAAGAAGCAACAAATTGTATTTGTCAACTTTAAACCAATTTATCTCATTTCCTGTGAAAGATATCAAAAAGCGGCCAACTGACAAAATGTTTATTATAATATCACAAACATATTATCAGTTGACAGATTTTTGATATCTCTTACAGGGTCCAAGATAATTGAGTTCAAAACCGCAAGCAGAGAGCGGCGTTTTACAGTGGTTGCAATCGAGGTTCCGACCGCGTCGCCAAATTATCTCGCTTCCAGTAAAAGATATCAAAAAGTCGCCAACTGATAAAATGTTTGTCATATTATTTTAAATATTTTACTAATTAAAAACTTTTTGATACCTCCTACAGTACCCGAGATAATTGAGCTCATATTTATAGTACCCAGAAAGAACGCATCAAACTATTTAGC</canonical_amplicon>
		<polymorphic_amplicon>TAAGGAAGATAAAGCAAAAGAAGCAACAAATTGTATTTGTCAACTTTAAACCAATTTATCTCATTTCCTGTGAAAGATATCAAAAAGCGGCCAACTGACAAAATGTTTATTATAATATCACAAACATATTATCAGTTGACAGATTTTTGATATCTCTTACAGGGTCCAAGATAATTGAGTTCAAAACCGCAAGCAGAGAGCGGCGTTTTACAGTGGTTGCAATCGAGGTTCCGACCGCGTCGCCAAATTATCTCGCTTCCAGTAAAAGATATCAAAAAGTCGCCAACTGATAAAATGTTTGTCATATTATTTTAAATATTTTACTAATTAAAAACTTTTTGATACCTCCTACKGTACCCGAGATAATTGAGCTCATATTTATAGTACCCAGAAAGAACGCATCAAACTATTTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38042</snp_id>
        <super_contig>c012700723.Contig2</super_contig>
        <contig_pos>78455</contig_pos>
        <strand>+</strand>
        <context>TGTCGTTTCC[C/T]ATTTCCTCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGAGCAAGAAAGATGCCATTTCAAATCCGAGTCAAAAGTGTCGTTTCC</left_flank>
        <right_flank>ATTTCCTCGGAACAAGAAAAAAGAAAATAAAAAATCACATAAAAATGTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATATCTGAATTTTTGAATTTCTGAATATCTGAATATCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATATCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATATCTGAATTTTTGAATTTCTGAATATCTGAATATCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTTTGAATTTTTGAATTTCGAAATTAAACAATTTTAAAATCCAAAAGTCCAATATTCTCGAAAACTTTCTAGAAAGCATTCTAAGCATACAAACCAAAAATGGGAAATTTGAGCAAAAACTCGAAATTTGCTCCGAAAAGAGCAAGAAAGATGCCATTTCAAATCCGAGTCAAAAGTGTCGTTTCCTATTTCCTCGGAACAAGAAAAAAGAAAATAAAAAATCACATAAAAATGTAAAAAAATTATGTTGTCAGTTTTTTTTTGTTTTTTAAAAACAGAGATTTTTCTTGGATGGATGGGTTCAAATGTGATGGATTTCGGAATTTTGGTTTTTAGGAAATTTGGAAAANNNNNNNNNNTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAGATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAGATTCTGAATTTCTAAATTTCAAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATT</canonical>
            <polymorphic>TTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATATCTGAATTTTTGAATTTCTGAATATCTGAATATCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATATCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATATCTGAATTTTTGAATTTCTGAATATCTGAATATCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTTTGAATTTTTGAATTTCGAAATTAAACAATTTTAAAATCCAAAAGTCCAATATTCTCGAAAACTTTCTAGAAAGCATTCTAAGCATACAAACCAAAAATGGGAAATTTGAGCAAAAACTCGAAATTTGCTCCGAAAAGAGCAAGAAAGATGCCATTTCAAATCCGAGTCAAAAGTGTCGTTTCCYATTTCCTCGGAACAAGAAAAAAGAAAATAAAAAATCACATAAAAATGTAAAAAAATTATGTTGTCAGTTTTTTTTTGTTTTTTAAAAACAGAGATTTTTCTTGGATGGATGGGTTCAAATGTGATGGATTTCGGAATTTTGGTTTTTAGGAAATTTGGAAAANNNNNNNNNNTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAGATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAGATTCTGAATTTCTAAATTTCAAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGCATTCTAAGCATACAAAC</pcr_primer_p1>
		<pcr_primer_p2>CATCCATCCAAGAAAAATCTC</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>GAAAGCATTCTAAGCATACAAACCAAAAATGGGAAATTTGAGCAAAAACTCGAAATTTGCTCCGAAAAGAGCAAGAAAGATGCCATTTCAAATCCGAGTCAAAAGTGTCGTTTCCTATTTCCTCGGAACAAGAAAAAAGAAAATAAAAAATCACATAAAAATGTAAAAAAATTATGTTGTCAGTTTTTTTTTGTTTTTTAAAAACAGAGATTTTTCTTGGATGGATG</canonical_amplicon>
		<polymorphic_amplicon>GAAAGCATTCTAAGCATACAAACCAAAAATGGGAAATTTGAGCAAAAACTCGAAATTTGCTCCGAAAAGAGCAAGAAAGATGCCATTTCAAATCCGAGTCAAAAGTGTCGTTTCCYATTTCCTCGGAACAAGAAAAAAGAAAATAAAAAATCACATAAAAATGTAAAAAAATTATGTTGTCAGTTTTTTTTTGTTTTTTAAAAACAGAGATTTTTCTTGGATGGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38043</snp_id>
        <super_contig>c012700723.Contig2</super_contig>
        <contig_pos>78523</contig_pos>
        <strand>+</strand>
        <context>ATGTTGTCAG[C/T]TTTTTTTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAGAAAATAAAAAATCACATAAAAATGTAAAAAAATTATGTTGTCAG</left_flank>
        <right_flank>TTTTTTTTGTTTTTTAAAAACAGAGATTTTTCTTGGATGGATGGGTTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAATATCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATATCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATATCTGAATTTTTGAATTTCTGAATATCTGAATATCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTTTGAATTTTTGAATTTCGAAATTAAACAATTTTAAAATCCAAAAGTCCAATATTCTCGAAAACTTTCTAGAAAGCATTCTAAGCATACAAACCAAAAATGGGAAATTTGAGCAAAAACTCGAAATTTGCTCCGAAAAGAGCAAGAAAGATGCCATTTCAAATCCGAGTCAAAAGTGTCGTTTCCTATTTCCTCGGAACAAGAAAAAAGAAAATAAAAAATCACATAAAAATGTAAAAAAATTATGTTGTCAGTTTTTTTTTGTTTTTTAAAAACAGAGATTTTTCTTGGATGGATGGGTTCAAATGTGATGGATTTCGGAATTTTGGTTTTTAGGAAATTTGGAAAANNNNNNNNNNTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAGATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAGATTCTGAATTTCTAAATTTCAAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAGATTCTGAATTTCTAAATTTCAAAATTTCTGAATTTCTGAATTTCTG</canonical>
            <polymorphic>TGAATATCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATATCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATATCTGAATTTTTGAATTTCTGAATATCTGAATATCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTTTGAATTTTTGAATTTCGAAATTAAACAATTTTAAAATCCAAAAGTCCAATATTCTCGAAAACTTTCTAGAAAGCATTCTAAGCATACAAACCAAAAATGGGAAATTTGAGCAAAAACTCGAAATTTGCTCCGAAAAGAGCAAGAAAGATGCCATTTCAAATCCGAGTCAAAAGTGTCGTTTCCTATTTCCTCGGAACAAGAAAAAAGAAAATAAAAAATCACATAAAAATGTAAAAAAATTATGTTGTCAGYTTTTTTTTGTTTTTTAAAAACAGAGATTTTTCTTGGATGGATGGGTTCAAATGTGATGGATTTCGGAATTTTGGTTTTTAGGAAATTTGGAAAANNNNNNNNNNTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAGATTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAGATTCTGAATTTCTAAATTTCAAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAGATTCTGAATTTCTAAATTTCAAAATTTCTGAATTTCTGAATTTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAGTCAAAAGTGTCGTTTC</pcr_primer_p1>
		<pcr_primer_p2>GGAATTTTGGTTTTTAGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>800</pcr_amplicon_size>
		<canonical_amplicon>CGAGTCAAAAGTGTCGTTTCCTATTTCCTCGGAACAAGAAAAAAGAAAATAAAAAATCACATAAAAATGTAAAAAAATTATGTTGTCAGTTTTTTTTTGTTTTTTAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>CGAGTCAAAAGTGTCGTTTCCTATTTCCTCGGAACAAGAAAAAAGAAAATAAAAAATCACATAAAAATGTAAAAAAATTATGTTGTCAGYTTTTTTTTGTTTTTTAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38044</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>14659</contig_pos>
        <strand>+</strand>
        <context>TCGAACGCAG[C/T]CAACACGAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACCATTGCAGTGCGGCGTTGAACAGTGACACTGAGAACTCGAACGCAG</left_flank>
        <right_flank>CAACACGAGATCCAGGGACACAGGTGGCAGCCGGGGATCCGCATCGTCTC</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCTGTATCATCTATTGCAACTCGAGGTCGTATACCAAGTACAAATCCAACTCCAGAAGCTGGGAACTCTAGTCGTGGACCTTCCACAAGAAGAACCACGCGCTCATCTGTTCCTTCTGTAGATCGTGAGCTTAGATGTAGGTCACAAAATCGTCTTATTTGTTTTCAAAATTAATCGTTTAGACCTCCCAGCCACAACGTCTTCTCGACAGACAACCACTCCAGTGACCACTAGTGGTCGTACCCGTCCAGTTGCACCACGAAAAAGTTCGCGAATCAGTGAGATGTCGAGTCGGCGCTCAGATTCAAGCGCTACCACTGCCTCTACGGCTGCTGCATGCAGAGCGGCTCTATTCACACAACCAGAAAGACCGCACACTCGAGCAACGCATAGTTCCAGAAACCGTTCAAAGTAAGACATTTCCCTATTGAACCCTATCATATTCTTAAACCATTGCAGTGCGGCGTTGAACAGTGACACTGAGAACTCGAACGCAGTCAACACGAGATCCAGGGACACAGGTGGCAGCCGGGGATCCGCATCGTCTCAGAGGGTATAATGGGTGGTACACACATAACATAGTACTAAAATTTTCGCCTTTAGACCAACCCAGTGCGCTCCTCAATCAGAATTGCTGATGCTGCAGCAAATAAGAATTCCAAAAATGCAAATCAAAGGAAGCGAAATGAAAAGCAGCCATTGGTTTCTAGAAACTCGAATTTAGCGCGCAGCTTGTCGGGTTCCTCCAATTCTGTAAGCAGTAAGGAGCAAGATTTTCACTCTCTTGATGTTTCAGGTGGCATCCACAGGAAGCGATCGGTTGTCAGACGACGGCCTGTCTCAGATGAATGCTCCAATGTCTTCAGTGGCTTCCTCGTTGAATAACGATGACCTAGGAGATGCAGTAGAAGTTTCATACGACGATAGATACAGTATGAAACAAAATATCGATTCTTAAATGAATTACCGAATTCCAGAGTGGCTATTCGATTTATACC</canonical>
            <polymorphic>CATCTGTATCATCTATTGCAACTCGAGGTCGTATACCAAGTACAAATCCAACTCCAGAAGCTGGGAACTCTAGTCGTGGACCTTCCACAAGAAGAACCACGCGCTCATCTGTTCCTTCTGTAGATCGTGAGCTTAGATGTAGGTCACAAAATCGTCTTATTTGTTTTCAAAATTAATCGTTTAGACCTCCCAGCCACAACGTCTTCTCGACAGACAACCACTCCAGTGACCACTAGTGGTCGTACCCGTCCAGTTGCACCACGAAAAAGTTCGCGAATCAGTGAGATGTCGAGTCGGCGCTCAGATTCAAGCGCTACCACTGCCTCTACGGCTGCTGCATGCAGAGCGGCTCTATTCACACAACCAGAAAGACCGCACACTCGAGCAACGCATAGTTCCAGAAACCGTTCAAAGTAAGACATTTCCCTATTGAACCCTATCATATTCTTAAACCATTGCAGTGCGGCGTTGAACAGTGACACTGAGAACTCGAACGCAGYCAACACGAGATCCAGGGACACAGGTGGCAGCCGGGGATCCGCATCGTCTCAGAGGGTATAATGGGTGGTACACACATAACATAGTACTAAAATTTTCGCCTTTAGACCAACCCAGTGCGCTCCTCAATCAGAATTGCTGATGCTGCAGCAAATAAGAATTCCAAAAATGCAAATCAAAGGAAGCGAAATGAAAAGCAGCCATTGGTTTCTAGAAACTCGAATTTAGCGCGCAGCTTGTCGGGTTCCTCCAATTCTGTAAGCAGTAAGGAGCAAGATTTTCACTCTCTTGATGTTTCAGGTGGCATCCACAGGAAGCGATCGGTTGTCAGACGACGGCCTGTCTCAGATGAATGCTCCAATGTCTTCAGTGGCTTCCTCGTTGAATAACGATGACCTAGGAGATGCAGTAGAAGTTTCATACGACGATAGATACAGTATGAAACAAAATATCGATTCTTAAATGAATTACCGAATTCCAGAGTGGCTATTCGATTTATACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>430 423 69 45 33</canonical_bands>
                <polymorphic_bands>492 430 45 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTATTCACACAACCAGAAAGAC</pcr_primer_p1>
		<pcr_primer_p2>AAGGCGAAAATTTTAGTACTATGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCTATTCACACAACCAGAAAGACCGCACACTCGAGCAACGCATAGTTCCAGAAACCGTTCAAAGTAAGACATTTCCCTATTGAACCCTATCATATTCTTAAACCATTGCAGTGCGGCGTTGAACAGTGACACTGAGAACTCGAACGCAGTCAACACGAGATCCAGGGACACAGGTGGCAGCCGGGGATCCGCATCGTCTCAGAGGGTATAATGGGTGGTACACACATAACATAGTACTAAAATTTTCGCCTT</canonical_amplicon>
		<polymorphic_amplicon>TCTATTCACACAACCAGAAAGACCGCACACTCGAGCAACGCATAGTTCCAGAAACCGTTCAAAGTAAGACATTTCCCTATTGAACCCTATCATATTCTTAAACCATTGCAGTGCGGCGTTGAACAGTGACACTGAGAACTCGAACGCAGYCAACACGAGATCCAGGGACACAGGTGGCAGCCGGGGATCCGCATCGTCTCAGAGGGTATAATGGGTGGTACACACATAACATAGTACTAAAATTTTCGCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38045</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>16866</contig_pos>
        <strand>+</strand>
        <context>CCAAAAGCTC[C/G]TACTTTTGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGTCCCATCTAAAACAGTTCATTTTTCCGGAAAATAAAAACCAAAAGCTC</left_flank>
        <right_flank>TACTTTTGCATATACAATACTTTTAGTCCACAGCTTCTGTGATTGTAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCGATCAGAATGTTTGAAGACTATAAACTCATTTCTGTCAGCTCTACACCCAACTTTATTTGTTTGTGAATATCCTGTCTTTCATTAGTCTTGCTTTCTAGAAAAAAAAACGAAGCGACAAAAAAAAATCCATTTACCTTTGTACAACCTTTCAATTTTTGTCGTACTTATTTTAAATTAATCAGTTTTTCGATTTTAGATTACATCTCTGTTAACACCAGATGTATGTACATTTAAAAGTTAGAGTCACGGGGTTGGGCACGACGATAATGGTGGGGTAGAGGTGGTTGTGCGCAGAATAAGACGAGCGAGAATAGGATCCACTGAAGACGTTGCCTCGACCACATCAGGCCAATTGAGACGGGAAGCTTCAGCTAGAACTCGTATCTGTTTGGCTTCATCGGCTAAATGACCAATCCATTTCGCTTCTACCTCTGACGGATCCACTAGTCCCATCTAAAACAGTTCATTTTTCCGGAAAATAAAAACCAAAAGCTCCTACTTTTGCATATACAATACTTTTAGTCCACAGCTTCTGTGATTGTAAATATTTGCATGCGTCTCCACCTGCACCGACTAAGAAAAGTAGTTCAACTCCGTCTTCAATTAAATCAGAGGCAATCAAGTTGGTGGCAATCAGTTTAATGAGTGACTTGGCTTTCTCGTTGTCTTGGGAAGATACCAACAAGGCTGCTTTGATGCTGGCGTATCTTAAATCGGCGGAAACAATTAATCGGTCAGTCACTCGTTCCTTCGCATTCCCTCCCACAACTACTGCTTGCTCAACCAATCGTCTTTCCATTGCTTGTTCGGCTGCACATGCGACACTGATTACTCTCGATTCTCGCTCTTTGAACTTTGCATTGTCCCAGAACATTTGTAGATTTGGTGGTAAATGATCGGTGTCTGAACGGGCGAATCTATCAATGACAATGGAAATTAGATCAGCTGAAAAGTGATCTCCAGTGAAACGACGAACTATTCGTTCTCGCCGAAGTT</canonical>
            <polymorphic>GTCGATCAGAATGTTTGAAGACTATAAACTCATTTCTGTCAGCTCTACACCCAACTTTATTTGTTTGTGAATATCCTGTCTTTCATTAGTCTTGCTTTCTAGAAAAAAAAACGAAGCGACAAAAAAAAATCCATTTACCTTTGTACAACCTTTCAATTTTTGTCGTACTTATTTTAAATTAATCAGTTTTTCGATTTTAGATTACATCTCTGTTAACACCAGATGTATGTACATTTAAAAGTTAGAGTCACGGGGTTGGGCACGACGATAATGGTGGGGTAGAGGTGGTTGTGCGCAGAATAAGACGAGCGAGAATAGGATCCACTGAAGACGTTGCCTCGACCACATCAGGCCAATTGAGACGGGAAGCTTCAGCTAGAACTCGTATCTGTTTGGCTTCATCGGCTAAATGACCAATCCATTTCGCTTCTACCTCTGACGGATCCACTAGTCCCATCTAAAACAGTTCATTTTTCCGGAAAATAAAAACCAAAAGCTCSTACTTTTGCATATACAATACTTTTAGTCCACAGCTTCTGTGATTGTAAATATTTGCATGCGTCTCCACCTGCACCGACTAAGAAAAGTAGTTCAACTCCGTCTTCAATTAAATCAGAGGCAATCAAGTTGGTGGCAATCAGTTTAATGAGTGACTTGGCTTTCTCGTTGTCTTGGGAAGATACCAACAAGGCTGCTTTGATGCTGGCGTATCTTAAATCGGCGGAAACAATTAATCGGTCAGTCACTCGTTCCTTCGCATTCCCTCCCACAACTACTGCTTGCTCAACCAATCGTCTTTCCATTGCTTGTTCGGCTGCACATGCGACACTGATTACTCTCGATTCTCGCTCTTTGAACTTTGCATTGTCCCAGAACATTTGTAGATTTGGTGGTAAATGATCGGTGTCTGAACGGGCGAATCTATCAATGACAATGGAAATTAGATCAGCTGAAAAGTGATCTCCAGTGAAACGACGAACTATTCGTTCTCGCCGAAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAGCTAGAACTCGTATCTGTT</pcr_primer_p1>
		<pcr_primer_p2>CTGATTTAATTGAAGACGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTCAGCTAGAACTCGTATCTGTTTGGCTTCATCGGCTAAATGACCAATCCATTTCGCTTCTACCTCTGACGGATCCACTAGTCCCATCTAAAACAGTTCATTTTTCCGGAAAATAAAAACCAAAAGCTCCTACTTTTGCATATACAATACTTTTAGTCCACAGCTTCTGTGATTGTAAATATTTGCATGCGTCTCCACCTGCACCGACTAAGAAAAGTAGTTCAACTCCGTCTTCAATTAAATCAG</canonical_amplicon>
		<polymorphic_amplicon>TTCAGCTAGAACTCGTATCTGTTTGGCTTCATCGGCTAAATGACCAATCCATTTCGCTTCTACCTCTGACGGATCCACTAGTCCCATCTAAAACAGTTCATTTTTCCGGAAAATAAAAACCAAAAGCTCSTACTTTTGCATATACAATACTTTTAGTCCACAGCTTCTGTGATTGTAAATATTTGCATGCGTCTCCACCTGCACCGACTAAGAAAAGTAGTTCAACTCCGTCTTCAATTAAATCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38046</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>53132</contig_pos>
        <strand></strand>
        <context>TCACCatcag[T/C]tgttaagttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTACTGTAAACACTAATAGAATGCCCTCCAAACCGTCAACTCACCATCAG</left_flank>
        <right_flank>TGTTAAGTTTTTGATATCTTTCACAGTAATAGACATAAATTTGATCAAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATTGTTCAGGTTTTGAAGATTAATTAAAGAAAATGGAAATAGAGAGAAAAAGAGAAATGAATTAAGAAAACGAATTAAGAAAAAACAGCTGACTATGGAAATAGAGAGAGAGAGAGAAAGGGATGAAATGAGAATTTCTCTATCACCGCCAAAGTGTGAAATTAGTCAATTTAGTACAAGAATCATATCAATGAAGATAGTTTGAAATTTAAGAACAATCAGATTGAAAAGGAGAAGTAAAATTTGTAGAAAATAAATTAAAATTTGAGCCTGAAAATAAAGGAAGTTGAGCGAAAAGATACATGAAAAATTGAGAGCTGAAAATTTTATAAACTTGAGAATCCTTCCTTTTGACTTCTTATTTCTCTGAATCACAATTTTTGAATTCTGGAACCTTCAAAAGTCTGGAATTCGACTTCTGAACAATCTCTGAGACTTGAAAATGGAGTACTGTAAACACTAATAGAATGCCCTCCAAACCGTCAACTCACCATCAGTTGTTAAGTTTTTGATATCTTTCACAGTAATAGACATAAATTTGATCAAAGTTGAAAGTTAGAGAGCAATTCTATTAGAGTGTTTACGGTACTTTCAGAATCTTGGAAGTTTTCGGGATGCAGGCTCAGGAAACATTCTCGAGTTGTTCTTTTTTTTCTGAGTTTCTGAAAACTTCAGACTCGAGAACATTTCCTAATTACTAGCGAGTTTTTGAAATAACAAAATTTAAAACTTCAGAGGCCGAAAATTCAAAAGTCTGAAACTTCTGAATCTAAACATTTTAGAAACTCAGAAGTCTGTTCACTTTCCTAAATCAATTTCATGAATCTAGGCTCCGGAAGTTTGGGAATCCTTTTCAAAACGTTAGAGAAAGTGTCCGTAGAATAAAATAAGACAAATCCAGTTTAGCAATAAGAACAAGCTACAGTATTACGGTACTTTCTTTCCAGTAGGTGCCAAGAAATTAACGAACGGAACGAAGTAGAACGGAAAGAAAGTGG</canonical>
            <polymorphic>AGATTGTTCAGGTTTTGAAGATTAATTAAAGAAAATGGAAATAGAGAGAAAAAGAGAAATGAATTAAGAAAACGAATTAAGAAAAAACAGCTGACTATGGAAATAGAGAGAGAGAGAGAAAGGGATGAAATGAGAATTTCTCTATCACCGCCAAAGTGTGAAATTAGTCAATTTAGTACAAGAATCATATCAATGAAGATAGTTTGAAATTTAAGAACAATCAGATTGAAAAGGAGAAGTAAAATTTGTAGAAAATAAATTAAAATTTGAGCCTGAAAATAAAGGAAGTTGAGCGAAAAGATACATGAAAAATTGAGAGCTGAAAATTTTATAAACTTGAGAATCCTTCCTTTTGACTTCTTATTTCTCTGAATCACAATTTTTGAATTCTGGAACCTTCAAAAGTCTGGAATTCGACTTCTGAACAATCTCTGAGACTTGAAAATGGAGTACTGTAAACACTAATAGAATGCCCTCCAAACCGTCAACTCACCATCAGYTGTTAAGTTTTTGATATCTTTCACAGTAATAGACATAAATTTGATCAAAGTTGAAAGTTAGAGAGCAATTCTATTAGAGTGTTTACGGTACTTTCAGAATCTTGGAAGTTTTCGGGATGCAGGCTCAGGAAACATTCTCGAGTTGTTCTTTTTTTTCTGAGTTTCTGAAAACTTCAGACTCGAGAACATTTCCTAATTACTAGCGAGTTTTTGAAATAACAAAATTTAAAACTTCAGAGGCCGAAAATTCAAAAGTCTGAAACTTCTGAATCTAAACATTTTAGAAACTCAGAAGTCTGTTCACTTTCCTAAATCAATTTCATGAATCTAGGCTCCGGAAGTTTGGGAATCCTTTTCAAAACGTTAGAGAAAGTGTCCGTAGAATAAAATAAGACAAATCCAGTTTAGCAATAAGAACAAGCTACAGTATTACGGTACTTTCTTTCCAGTAGGTGCCAAGAAATTAACGAACGGAACGAAGTAGAACGGAAAGAAAGTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAAAATGGAGTACTGTAAACAC</pcr_primer_p1>
		<pcr_primer_p2>AAATGTTCTCGAGTCTGAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTGAAAATGGAGTACTGTAAACACTAATAGAATGCCCTCCAAACCGTCAACTCACCATCAGTTGTTAAGTTTTTGATATCTTTCACAGTAATAGACATAAATTTGATCAAAGTTGAAAGTTAGAGAGCAATTCTATTAGAGTGTTTACGGTACTTTCAGAATCTTGGAAGTTTTCGGGATGCAGGCTCAGGAAACATTCTCGAGTTGTTCTTTTTTTTCTGAGTTTCTGAAAACTTCAGACTCGAGAACATTT</canonical_amplicon>
		<polymorphic_amplicon>TTGAAAATGGAGTACTGTAAACACTAATAGAATGCCCTCCAAACCGTCAACTCACCATCAGYTGTTAAGTTTTTGATATCTTTCACAGTAATAGACATAAATTTGATCAAAGTTGAAAGTTAGAGAGCAATTCTATTAGAGTGTTTACGGTACTTTCAGAATCTTGGAAGTTTTCGGGATGCAGGCTCAGGAAACATTCTCGAGTTGTTCTTTTTTTTCTGAGTTTCTGAAAACTTCAGACTCGAGAACATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38047</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>146228</contig_pos>
        <strand></strand>
        <context>atcatttata[G/A]aatcgagtat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTGTCAGAATTTTCTCTAAATTCATTTTTCTCTGAAAAGGATCATTTATA</left_flank>
        <right_flank>AATCGAGTATAGGATTATTTGAAACAAAAGCGGCTACCTGCAACACTGGC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTGGAACCAACTTTTAAAGGAACTTGTAATATTACTGTATCGAATAAAACATATCTAATCTTGACAACTTCAGTAAAGAAATTATAGACTGTGGAAATCATAAAAGCTATAAAGCTATAGTAGTTACTCTAATAAAAGCTGACCCTATACTTGCTCAATTATCTCAATTTCCATGGAAGATATAAACATTTCGTCGACAGATAAATTGATCATCACACTATCATCAAACTTTTATCAGTTGAATAATTGTGATATCTTTCAAAGGAAACGAGACGATTTTCCAGGGTTTCCCAATAAATAGTTTTCGACATTGATTTTCTATAATATTTTTTTGGAAAAACTGAAATTTCTGAACCTTCGGATTTTCAGATTTTTCCCACTAATTAGTTTTTTTTCCAGCGAAGCTCACCTGTATCTAACCGGAAAAGAAAATGTCGTTTAGAAAGCTTGTCAGAATTTTCTCTAAATTCATTTTTCTCTGAAAAGGATCATTTATAGAATCGAGTATAGGATTATTTGAAACAAAAGCGGCTACCTGCAACACTGGCTGAAACTCGAATTAAATCAATCTGGAAATGTGAGATTTACGCGAGTCTTCGAGTCTTGTAAAAGATCTTATTGTAAAAGATCTTCTTGTAAAAGATCTCAAATAACGTTTAAAGGCAAAAATGTTTGTCTTGAAATCAGCAACATTTTATTAGTTGACAAAATGTTTGAGACTCAAACAGGAAACGAGATAATTTGGGTCAAAGGAAGGATCTTTTTAAGGAGTATCACAGATTTTAAAAGTGAAAATTCACACGGTATTTTTCATGAGAAACGTAGATTTTTTTTTGAAAAGTAGGACATAAAAACGAAATTATTCAAAAACTAATTGATTTTCACTTCACGCGTTTTCGTGATCCGCGGCCGGCTCGGCTAGCCGCGGCTTTTCACGGCTTTCATAAAAAATCCGCGGCCGGCCTCGGCCTCAAAAATCGAGCCGCGGCTGAGGCCGG</canonical>
            <polymorphic>CATTGGAACCAACTTTTAAAGGAACTTGTAATATTACTGTATCGAATAAAACATATCTAATCTTGACAACTTCAGTAAAGAAATTATAGACTGTGGAAATCATAAAAGCTATAAAGCTATAGTAGTTACTCTAATAAAAGCTGACCCTATACTTGCTCAATTATCTCAATTTCCATGGAAGATATAAACATTTCGTCGACAGATAAATTGATCATCACACTATCATCAAACTTTTATCAGTTGAATAATTGTGATATCTTTCAAAGGAAACGAGACGATTTTCCAGGGTTTCCCAATAAATAGTTTTCGACATTGATTTTCTATAATATTTTTTTGGAAAAACTGAAATTTCTGAACCTTCGGATTTTCAGATTTTTCCCACTAATTAGTTTTTTTTCCAGCGAAGCTCACCTGTATCTAACCGGAAAAGAAAATGTCGTTTAGAAAGCTTGTCAGAATTTTCTCTAAATTCATTTTTCTCTGAAAAGGATCATTTATARAATCGAGTATAGGATTATTTGAAACAAAAGCGGCTACCTGCAACACTGGCTGAAACTCGAATTAAATCAATCTGGAAATGTGAGATTTACGCGAGTCTTCGAGTCTTGTAAAAGATCTTATTGTAAAAGATCTTCTTGTAAAAGATCTCAAATAACGTTTAAAGGCAAAAATGTTTGTCTTGAAATCAGCAACATTTTATTAGTTGACAAAATGTTTGAGACTCAAACAGGAAACGAGATAATTTGGGTCAAAGGAAGGATCTTTTTAAGGAGTATCACAGATTTTAAAAGTGAAAATTCACACGGTATTTTTCATGAGAAACGTAGATTTTTTTTTGAAAAGTAGGACATAAAAACGAAATTATTCAAAAACTAATTGATTTTCACTTCACGCGTTTTCGTGATCCGCGGCCGGCTCGGCTAGCCGCGGCTTTTCACGGCTTTCATAAAAAATCCGCGGCCGGCCTCGGCCTCAAAAATCGAGCCGCGGCTGAGGCCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>500 280 119 93 8</canonical_bands>
                <polymorphic_bands>593 280 119 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGAAGCTCACCTGTATCTA</pcr_primer_p1>
		<pcr_primer_p2>TTTTATTCGAAATTAGACGATTG</pcr_primer_p2>
		<pcr_amplicon_size>658</pcr_amplicon_size>
		<canonical_amplicon>GCGAAGCTCACCTGTATCTAACCGGAAAAGAAAATGTCGTTTAGAAAGCTTGTCAGAATTTTCTCTAAATTCATTTTTCTCTGAAAAGGATCATTTATAGAATCGAGTATAGGATTATTTGA</canonical_amplicon>
		<polymorphic_amplicon>GCGAAGCTCACCTGTATCTAACCGGAAAAGAAAATGTCGTTTAGAAAGCTTGTCAGAATTTTCTCTAAATTCATTTTTCTCTGAAAAGGATCATTTATARAATCGAGTATAGGATTATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38048</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>148036</contig_pos>
        <strand>+</strand>
        <context>CTCCTGGGAA[A/G]GCTAGAAACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCGCCAACCACTATGCCTTGTACAGGGGATGGATGTGTGCTCCTGGGAA</left_flank>
        <right_flank>GCTAGAAACCAAGGGGGCCCTGTTGTTGGACTCCAAGCATACTAGAAATA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCCATGTTCGGTTATTTTTCTCTACAGTATATCAAAGGCGGAGAGCACACCAACTGGGAGGAAAAGCAAAAGTGGGAACAACCATCTGGGAGGAAAAATGGGCGGAGCTTAATTTGCAACCCTGGCACGCTTTTGCCGCATGGTTTTTTTCTTGACCNNNNNNNNNNCCGTGCCAGGGTTGCAAATTAGGCTCCGCCAATTTTTCCTCCCAGATGGTTCTTCCCACTTTTTGTTTTCCTCCCAGTTGGTGTGCTCTCCTCAGTTGACCCAAAAACTGCAAAAAGTTTGGAACGCTTCACGAATTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATTGTTCCAATTTTAGTATATGTTCTCGGAAGAACAAATACTGGAGATGGGCGGTTCACTTATATAGGGGTATCTGGGAGAGCAGCCGACATCTCACGACTTGCGCCAACCACTATGCCTTGTACAGGGGATGGATGTGTGCTCCTGGGAAAGCTAGAAACCAAGGGGGCCCTGTTGTTGGACTCCAAGCATACTAGAAATACTAGACCAAATATAAGAAGGCAAAATATCCAAATCTCAAATATTACCCTTGTTATCCTTTTCCAGATGTATAGAAGGAATTGACGACTGGAATCTTCGACTCTCCGATTGGATGAAATCAGAAGCTGTAAACTGTGAATTCCTTGAGGCTGTCTGCTGGGAAGATGACACCGAAGTCTATGGATACATTCATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGACAGCCTACAACCCCGAAAACCTCAACAGATCAGCCAAGTGTTTTTGTATTTCTTTTTGATTCAATGAGCACTGGATCAGCAAAACGGTACAACAAACTTTTTTTGCGGAATCTCTTATTCTTTTTCCAGATCGTTCCCCAAAACCCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAATTCCCATTTGTAA</canonical>
            <polymorphic>TTTCCATGTTCGGTTATTTTTCTCTACAGTATATCAAAGGCGGAGAGCACACCAACTGGGAGGAAAAGCAAAAGTGGGAACAACCATCTGGGAGGAAAAATGGGCGGAGCTTAATTTGCAACCCTGGCACGCTTTTGCCGCATGGTTTTTTTCTTGACCNNNNNNNNNNCCGTGCCAGGGTTGCAAATTAGGCTCCGCCAATTTTTCCTCCCAGATGGTTCTTCCCACTTTTTGTTTTCCTCCCAGTTGGTGTGCTCTCCTCAGTTGACCCAAAAACTGCAAAAAGTTTGGAACGCTTCACGAATTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATTGTTCCAATTTTAGTATATGTTCTCGGAAGAACAAATACTGGAGATGGGCGGTTCACTTATATAGGGGTATCTGGGAGAGCAGCCGACATCTCACGACTTGCGCCAACCACTATGCCTTGTACAGGGGATGGATGTGTGCTCCTGGGAARGCTAGAAACCAAGGGGGCCCTGTTGTTGGACTCCAAGCATACTAGAAATACTAGACCAAATATAAGAAGGCAAAATATCCAAATCTCAAATATTACCCTTGTTATCCTTTTCCAGATGTATAGAAGGAATTGACGACTGGAATCTTCGACTCTCCGATTGGATGAAATCAGAAGCTGTAAACTGTGAATTCCTTGAGGCTGTCTGCTGGGAAGATGACACCGAAGTCTATGGATACATTCATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGACAGCCTACAACCCCGAAAACCTCAACAGATCAGCCAAGTGTTTTTGTATTTCTTTTTGATTCAATGAGCACTGGATCAGCAAAACGGTACAACAAACTTTTTTTGCGGAATCTCTTATTCTTTTTCCAGATCGTTCCCCAAAACCCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAATTCCCATTTGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>392 326 173 109</canonical_bands>
                <polymorphic_bands>565 326 109</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>161 157 137 111 109 104 83 68 30 24 16</canonical_bands>
                <polymorphic_bands>161 157 137 111 109 104 84 83 30 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTCTCTGTATTGTTCCAATTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTGGATATTTTGCCTTCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCTTCTCTGTATTGTTCCAATTTTAGTATATGTTCTCGGAAGAACAAATACTGGAGATGGGCGGTTCACTTATATAGGGGTATCTGGGAGAGCAGCCGACATCTCACGACTTGCGCCAACCACTATGCCTTGTACAGGGGATGGATGTGTGCTCCTGGGAAAGCTAGAAACCAAGGGGGCCCTGTTGTTGGACTCCAAGCATACTAGAAATACTAGACCAAATATAAGAAGGCAAAATATCCAAAT</canonical_amplicon>
		<polymorphic_amplicon>TCTTCTCTGTATTGTTCCAATTTTAGTATATGTTCTCGGAAGAACAAATACTGGAGATGGGCGGTTCACTTATATAGGGGTATCTGGGAGAGCAGCCGACATCTCACGACTTGCGCCAACCACTATGCCTTGTACAGGGGATGGATGTGTGCTCCTGGGAARGCTAGAAACCAAGGGGGCCCTGTTGTTGGACTCCAAGCATACTAGAAATACTAGACCAAATATAAGAAGGCAAAATATCCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38049</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>148050</contig_pos>
        <strand>+</strand>
        <context>AGAAACCAAG[A/G]GGGCCCTGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCCTTGTACAGGGGATGGATGTGTGCTCCTGGGAAAGCTAGAAACCAAG</left_flank>
        <right_flank>GGGCCCTGTTGTTGGACTCCAAGCATACTAGAAATACTAGACCAAATATA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTTTCTCTACAGTATATCAAAGGCGGAGAGCACACCAACTGGGAGGAAAAGCAAAAGTGGGAACAACCATCTGGGAGGAAAAATGGGCGGAGCTTAATTTGCAACCCTGGCACGCTTTTGCCGCATGGTTTTTTTCTTGACCNNNNNNNNNNCCGTGCCAGGGTTGCAAATTAGGCTCCGCCAATTTTTCCTCCCAGATGGTTCTTCCCACTTTTTGTTTTCCTCCCAGTTGGTGTGCTCTCCTCAGTTGACCCAAAAACTGCAAAAAGTTTGGAACGCTTCACGAATTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATTGTTCCAATTTTAGTATATGTTCTCGGAAGAACAAATACTGGAGATGGGCGGTTCACTTATATAGGGGTATCTGGGAGAGCAGCCGACATCTCACGACTTGCGCCAACCACTATGCCTTGTACAGGGGATGGATGTGTGCTCCTGGGAAAGCTAGAAACCAAGGGGGCCCTGTTGTTGGACTCCAAGCATACTAGAAATACTAGACCAAATATAAGAAGGCAAAATATCCAAATCTCAAATATTACCCTTGTTATCCTTTTCCAGATGTATAGAAGGAATTGACGACTGGAATCTTCGACTCTCCGATTGGATGAAATCAGAAGCTGTAAACTGTGAATTCCTTGAGGCTGTCTGCTGGGAAGATGACACCGAAGTCTATGGATACATTCATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGACAGCCTACAACCCCGAAAACCTCAACAGATCAGCCAAGTGTTTTTGTATTTCTTTTTGATTCAATGAGCACTGGATCAGCAAAACGGTACAACAAACTTTTTTTGCGGAATCTCTTATTCTTTTTCCAGATCGTTCCCCAAAACCCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAATTCCCATTTGTAAACAAAGTTGGAGAG</canonical>
            <polymorphic>TATTTTTCTCTACAGTATATCAAAGGCGGAGAGCACACCAACTGGGAGGAAAAGCAAAAGTGGGAACAACCATCTGGGAGGAAAAATGGGCGGAGCTTAATTTGCAACCCTGGCACGCTTTTGCCGCATGGTTTTTTTCTTGACCNNNNNNNNNNCCGTGCCAGGGTTGCAAATTAGGCTCCGCCAATTTTTCCTCCCAGATGGTTCTTCCCACTTTTTGTTTTCCTCCCAGTTGGTGTGCTCTCCTCAGTTGACCCAAAAACTGCAAAAAGTTTGGAACGCTTCACGAATTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATTGTTCCAATTTTAGTATATGTTCTCGGAAGAACAAATACTGGAGATGGGCGGTTCACTTATATAGGGGTATCTGGGAGAGCAGCCGACATCTCACGACTTGCGCCAACCACTATGCCTTGTACAGGGGATGGATGTGTGCTCCTGGGAAAGCTAGAAACCAAGRGGGCCCTGTTGTTGGACTCCAAGCATACTAGAAATACTAGACCAAATATAAGAAGGCAAAATATCCAAATCTCAAATATTACCCTTGTTATCCTTTTCCAGATGTATAGAAGGAATTGACGACTGGAATCTTCGACTCTCCGATTGGATGAAATCAGAAGCTGTAAACTGTGAATTCCTTGAGGCTGTCTGCTGGGAAGATGACACCGAAGTCTATGGATACATTCATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGACAGCCTACAACCCCGAAAACCTCAACAGATCAGCCAAGTGTTTTTGTATTTCTTTTTGATTCAATGAGCACTGGATCAGCAAAACGGTACAACAAACTTTTTTTGCGGAATCTCTTATTCTTTTTCCAGATCGTTCCCCAAAACCCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAATTCCCATTTGTAAACAAAGTTGGAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>505 317 108 53 17</canonical_bands>
                <polymorphic_bands>522 317 108 53</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>498 188 179 135</canonical_bands>
                <polymorphic_bands>497 189 179 135</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>502 498</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTCTCTGTATTGTTCCAATTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTGGATATTTTGCCTTCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCTTCTCTGTATTGTTCCAATTTTAGTATATGTTCTCGGAAGAACAAATACTGGAGATGGGCGGTTCACTTATATAGGGGTATCTGGGAGAGCAGCCGACATCTCACGACTTGCGCCAACCACTATGCCTTGTACAGGGGATGGATGTGTGCTCCTGGGAAAGCTAGAAACCAAGGGGGCCCTGTTGTTGGACTCCAAGCATACTAGAAATACTAGACCAAATATAAGAAGGCAAAATATCCAAAT</canonical_amplicon>
		<polymorphic_amplicon>TCTTCTCTGTATTGTTCCAATTTTAGTATATGTTCTCGGAAGAACAAATACTGGAGATGGGCGGTTCACTTATATAGGGGTATCTGGGAGAGCAGCCGACATCTCACGACTTGCGCCAACCACTATGCCTTGTACAGGGGATGGATGTGTGCTCCTGGGAAAGCTAGAAACCAAGRGGGCCCTGTTGTTGGACTCCAAGCATACTAGAAATACTAGACCAAATATAAGAAGGCAAAATATCCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38050</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>148218</contig_pos>
        <strand>+</strand>
        <context>AAGCTGTAAA[C/T]TGTGAATTYC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACGACTGGAATCTTCGACTCTCCGATTGGATGAAATCAGAAGCTGTAAA</left_flank>
        <right_flank>TGTGAATTCCTTGAGGCTGTCTGCTGGGAAGATGACACCGAAGTCTATGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAAATTAGGCTCCGCCAATTTTTCCTCCCAGATGGTTCTTCCCACTTTTTGTTTTCCTCCCAGTTGGTGTGCTCTCCTCAGTTGACCCAAAAACTGCAAAAAGTTTGGAACGCTTCACGAATTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATTGTTCCAATTTTAGTATATGTTCTCGGAAGAACAAATACTGGAGATGGGCGGTTCACTTATATAGGGGTATCTGGGAGAGCAGCCGACATCTCACGACTTGCGCCAACCACTATGCCTTGTACAGGGGATGGATGTGTGCTCCTGGGAAAGCTAGAAACCAAGGGGGCCCTGTTGTTGGACTCCAAGCATACTAGAAATACTAGACCAAATATAAGAAGGCAAAATATCCAAATCTCAAATATTACCCTTGTTATCCTTTTCCAGATGTATAGAAGGAATTGACGACTGGAATCTTCGACTCTCCGATTGGATGAAATCAGAAGCTGTAAACTGTGAATTCCTTGAGGCTGTCTGCTGGGAAGATGACACCGAAGTCTATGGATACATTCATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGACAGCCTACAACCCCGAAAACCTCAACAGATCAGCCAAGTGTTTTTGTATTTCTTTTTGATTCAATGAGCACTGGATCAGCAAAACGGTACAACAAACTTTTTTTGCGGAATCTCTTATTCTTTTTCCAGATCGTTCCCCAAAACCCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAATTCCCATTTGTAAACAAAGTTGGAGAGAACAGTATGCCGAATGGGTTTTCACTGTGGTTTGGTATGTCTTCCTGTTTGGTTGTGGCTACAGTTTTTTTTTCAGGAAAGTTATTAGAGCCAGTTCTTGGAAAGAACTACGGTGGGGTCGATGTAGAGGCGGATTGGAACTCAACGTCATATTGTTATACTCATTTG</canonical>
            <polymorphic>GCAAATTAGGCTCCGCCAATTTTTCCTCCCAGATGGTTCTTCCCACTTTTTGTTTTCCTCCCAGTTGGTGTGCTCTCCTCAGTTGACCCAAAAACTGCAAAAAGTTTGGAACGCTTCACGAATTTGCGTGTCATCCTTGCGCAGGGGCCATGCTAATCTTCTCTGTATTGTTCCAATTTTAGTATATGTTCTCGGAAGAACAAATACTGGAGATGGGCGGTTCACTTATATAGGGGTATCTGGGAGAGCAGCCGACATCTCACGACTTGCGCCAACCACTATGCCTTGTACAGGGGATGGATGTGTGCTCCTGGGAAAGCTAGAAACCAAGGGGGCCCTGTTGTTGGACTCCAAGCATACTAGAAATACTAGACCAAATATAAGAAGGCAAAATATCCAAATCTCAAATATTACCCTTGTTATCCTTTTCCAGATGTATAGAAGGAATTGACGACTGGAATCTTCGACTCTCCGATTGGATGAAATCAGAAGCTGTAAAYTGTGAATTCCTTGAGGCTGTCTGCTGGGAAGATGACACCGAAGTCTATGGATACATTCATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGACAGCCTACAACCCCGAAAACCTCAACAGATCAGCCAAGTGTTTTTGTATTTCTTTTTGATTCAATGAGCACTGGATCAGCAAAACGGTACAACAAACTTTTTTTGCGGAATCTCTTATTCTTTTTCCAGATCGTTCCCCAAAACCCTATCGCTCCTTTCTTCTCGTCTAGATTCTGTTGAATTCCCATTTGTAAACAAAGTTGGAGAGAACAGTATGCCGAATGGGTTTTCACTGTGGTTTGGTATGTCTTCCTGTTTGGTTGTGGCTACAGTTTTTTTTTCAGGAAAGTTATTAGAGCCAGTTCTTGGAAAGAACTACGGTGGGGTCGATGTAGAGGCGGATTGGAACTCAACGTCATATTGTTATACTCATTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 209 126 56 49 37 22</canonical_bands>
                <polymorphic_bands>710 126 56 49 37 22</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>275 237 183 138 84 83</canonical_bands>
                <polymorphic_bands>358 237 183 138 84</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAGAAGGCAAAATATCCAAAT</pcr_primer_p1>
		<pcr_primer_p2>TGTCTGGAATGACTTTAGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATAAGAAGGCAAAATATCCAAATCTCAAATATTACCCTTGTTATCCTTTTCCAGATGTATAGAAGGAATTGACGACTGGAATCTTCGACTCTCCGATTGGATGAAATCAGAAGCTGTAAACTGTGAATTCCTTGAGGCTGTCTGCTGGGAAGATGACACCGAAGTCTATGGATACATTCATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGACA</canonical_amplicon>
		<polymorphic_amplicon>ATAAGAAGGCAAAATATCCAAATCTCAAATATTACCCTTGTTATCCTTTTCCAGATGTATAGAAGGAATTGACGACTGGAATCTTCGACTCTCCGATTGGATGAAATCAGAAGCTGTAAAYTGTGAATTCCTTGAGGCTGTCTGCTGGGAAGATGACACCGAAGTCTATGGATACATTCATACACAAATCATACCAAAGTGAACATAACAATAATTTGTTATTTGAAATCTAAAGTCATTCCAGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38051</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>165823</contig_pos>
        <strand></strand>
        <context>AACTCGTTGC[C/A]WTCATCATCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CGAATCCCTTCTTTCTGAAATTCTATTTTGGCTGTTTTCCAACTCGTTGC</left_flank>
        <right_flank>ATCATCATCAACTCATTTCTGTTGAAAAGTCAGCAGCCCCAAATGAAGTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCGTCAGATTCAAGACGGATTCGCCACATTGAGGCAAGAGGCTCCCCAGCTGCTGAACATGTTCCACGCACAAGCGGGACCTGGAATGGACCAGTTGTTCGGGAATGCAGCTGCCAATGCTGCCGCTGGAACCACGGGAACTCCGTCCGCTGCTTCAACTGCTGCAGGTGGTGTTGGAAATGGAATGAGTGGTCTTGCTGATTTGATCAGGCACATGAATATGGGTGGACGGGTGAGTAGTTTCCCTTCATTAAAAGTTAGAGATCGTTAATTGTATGAGCTGCAGCGAAAATTTGTGTTCTGAGGGTCTGATTTTTGGCAGTTCTTGAAATATTTCAACTTGTTCTCAAGGCTTTGGAATATCGTGAACCATAGAATACCGTACACCTTCAAACCCCCTTTGTAGAGCACAGATTCAACCTACAGTTATCTCCATAGTTTTTCTCCGAATCCCTTCTTTCTGAAATTCTATTTTGGCTGTTTTCCAACTCGTTGCCATCATCATCAACTCATTTCTGTTGAAAAGTCAGCAGCCCCAAATGAAGTTCCTTTCCCCTCACTCTCTTTTCATTTCATATATCAACGTTTTTGCTCAAATTTAGAAGCTGATGAGTTGTCTTCTGTCGAGTCACTCTGTGACATCGGCCGACGGAAGTGCCGCCGCCTCGCCAAGATAGAGTCTGTTCTGAATAATGTAACAAGACGACGATGTCTTGTGCTTTTCATCGCGCGGCGTCTTGTTTGACATGCTATGGATAAATGTTAGATAATGAGTATAAAGTGACGACGACAACTATGAGGAAGAGAGAGAGAGGAATCGAAAATCGTTTTCTGTTTGCTCTCAGAAAATGCAATTATCATATCGAATTTCTTTCTTGTCCCATCTTTCTCCGGCTGCTTCTTGTTTCTTTTTCAGAGTCTTATGATGATTTCCCCAGAATTCATATAAGCCCATTGAAGTATGTGGAGAAGAAGAAACAGAAGATGTGTGGGAAAT</canonical>
            <polymorphic>TTTCCGTCAGATTCAAGACGGATTCGCCACATTGAGGCAAGAGGCTCCCCAGCTGCTGAACATGTTCCACGCACAAGCGGGACCTGGAATGGACCAGTTGTTCGGGAATGCAGCTGCCAATGCTGCCGCTGGAACCACGGGAACTCCGTCCGCTGCTTCAACTGCTGCAGGTGGTGTTGGAAATGGAATGAGTGGTCTTGCTGATTTGATCAGGCACATGAATATGGGTGGACGGGTGAGTAGTTTCCCTTCATTAAAAGTTAGAGATCGTTAATTGTATGAGCTGCAGCGAAAATTTGTGTTCTGAGGGTCTGATTTTTGGCAGTTCTTGAAATATTTCAACTTGTTCTCAAGGCTTTGGAATATCGTGAACCATAGAATACCGTACACCTTCAAACCCCCTTTGTAGAGCACAGATTCAACCTACAGTTATCTCCATAGTTTTTCTCCGAATCCCTTCTTTCTGAAATTCTATTTTGGCTGTTTTCCAACTCGTTGCMATCATCATCAACTCATTTCTGTTGAAAAGTCAGCAGCCCCAAATGAAGTTCCTTTCCCCTCACTCTCTTTTCATTTCATATATCAACGTTTTTGCTCAAATTTAGAAGCTGATGAGTTGTCTTCTGTCGAGTCACTCTGTGACATCGGCCGACGGAAGTGCCGCCGCCTCGCCAAGATAGAGTCTGTTCTGAATAATGTAACAAGACGACGATGTCTTGTGCTTTTCATCGCGCGGCGTCTTGTTTGACATGCTATGGATAAATGTTAGATAATGAGTATAAAGTGACGACGACAACTATGAGGAAGAGAGAGAGAGGAATCGAAAATCGTTTTCTGTTTGCTCTCAGAAAATGCAATTATCATATCGAATTTCTTTCTTGTCCCATCTTTCTCCGGCTGCTTCTTGTTTCTTTTTCAGAGTCTTATGATGATTTCCCCAGAATTCATATAAGCCCATTGAAGTATGTGGAGAAGAAGAAACAGAAGATGTGTGGGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAATACCGTACACCTTCAAAC</pcr_primer_p1>
		<pcr_primer_p2>GAAGACAACTCATCAGCTTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAGAATACCGTACACCTTCAAACCCCCTTTGTAGAGCACAGATTCAACCTACAGTTATCTCCATAGTTTTTCTCCGAATCCCTTCTTTCTGAAATTCTATTTTGGCTGTTTTCCAACTCGTTGCCATCATCATCAACTCATTTCTGTTGAAAAGTCAGCAGCCCCAAATGAAGTTCCTTTCCCCTCACTCTCTTTTCATTTCATATATCAACGTTTTTGCTCAAATTTAGAAGCTGATGAGTTGTCTTC</canonical_amplicon>
		<polymorphic_amplicon>TAGAATACCGTACACCTTCAAACCCCCTTTGTAGAGCACAGATTCAACCTACAGTTATCTCCATAGTTTTTCTCCGAATCCCTTCTTTCTGAAATTCTATTTTGGCTGTTTTCCAACTCGTTGCMATCATCATCAACTCATTTCTGTTGAAAAGTCAGCAGCCCCAAATGAAGTTCCTTTCCCCTCACTCTCTTTTCATTTCATATATCAACGTTTTTGCTCAAATTTAGAAGCTGATGAGTTGTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38052</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>165824</contig_pos>
        <strand></strand>
        <context>ACTCGTTGCM[A/T]TCATCATCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAATCCCTTCTTTCTGAAATTCTATTTTGGCTGTTTTCCAACTCGTTGCC</left_flank>
        <right_flank>TCATCATCAACTCATTTCTGTTGAAAAGTCAGCAGCCCCAAATGAAGTTC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCGTCAGATTCAAGACGGATTCGCCACATTGAGGCAAGAGGCTCCCCAGCTGCTGAACATGTTCCACGCACAAGCGGGACCTGGAATGGACCAGTTGTTCGGGAATGCAGCTGCCAATGCTGCCGCTGGAACCACGGGAACTCCGTCCGCTGCTTCAACTGCTGCAGGTGGTGTTGGAAATGGAATGAGTGGTCTTGCTGATTTGATCAGGCACATGAATATGGGTGGACGGGTGAGTAGTTTCCCTTCATTAAAAGTTAGAGATCGTTAATTGTATGAGCTGCAGCGAAAATTTGTGTTCTGAGGGTCTGATTTTTGGCAGTTCTTGAAATATTTCAACTTGTTCTCAAGGCTTTGGAATATCGTGAACCATAGAATACCGTACACCTTCAAACCCCCTTTGTAGAGCACAGATTCAACCTACAGTTATCTCCATAGTTTTTCTCCGAATCCCTTCTTTCTGAAATTCTATTTTGGCTGTTTTCCAACTCGTTGCCATCATCATCAACTCATTTCTGTTGAAAAGTCAGCAGCCCCAAATGAAGTTCCTTTCCCCTCACTCTCTTTTCATTTCATATATCAACGTTTTTGCTCAAATTTAGAAGCTGATGAGTTGTCTTCTGTCGAGTCACTCTGTGACATCGGCCGACGGAAGTGCCGCCGCCTCGCCAAGATAGAGTCTGTTCTGAATAATGTAACAAGACGACGATGTCTTGTGCTTTTCATCGCGCGGCGTCTTGTTTGACATGCTATGGATAAATGTTAGATAATGAGTATAAAGTGACGACGACAACTATGAGGAAGAGAGAGAGAGGAATCGAAAATCGTTTTCTGTTTGCTCTCAGAAAATGCAATTATCATATCGAATTTCTTTCTTGTCCCATCTTTCTCCGGCTGCTTCTTGTTTCTTTTTCAGAGTCTTATGATGATTTCCCCAGAATTCATATAAGCCCATTGAAGTATGTGGAGAAGAAGAAACAGAAGATGTGTGGGAAATA</canonical>
            <polymorphic>TTCCGTCAGATTCAAGACGGATTCGCCACATTGAGGCAAGAGGCTCCCCAGCTGCTGAACATGTTCCACGCACAAGCGGGACCTGGAATGGACCAGTTGTTCGGGAATGCAGCTGCCAATGCTGCCGCTGGAACCACGGGAACTCCGTCCGCTGCTTCAACTGCTGCAGGTGGTGTTGGAAATGGAATGAGTGGTCTTGCTGATTTGATCAGGCACATGAATATGGGTGGACGGGTGAGTAGTTTCCCTTCATTAAAAGTTAGAGATCGTTAATTGTATGAGCTGCAGCGAAAATTTGTGTTCTGAGGGTCTGATTTTTGGCAGTTCTTGAAATATTTCAACTTGTTCTCAAGGCTTTGGAATATCGTGAACCATAGAATACCGTACACCTTCAAACCCCCTTTGTAGAGCACAGATTCAACCTACAGTTATCTCCATAGTTTTTCTCCGAATCCCTTCTTTCTGAAATTCTATTTTGGCTGTTTTCCAACTCGTTGCCWTCATCATCAACTCATTTCTGTTGAAAAGTCAGCAGCCCCAAATGAAGTTCCTTTCCCCTCACTCTCTTTTCATTTCATATATCAACGTTTTTGCTCAAATTTAGAAGCTGATGAGTTGTCTTCTGTCGAGTCACTCTGTGACATCGGCCGACGGAAGTGCCGCCGCCTCGCCAAGATAGAGTCTGTTCTGAATAATGTAACAAGACGACGATGTCTTGTGCTTTTCATCGCGCGGCGTCTTGTTTGACATGCTATGGATAAATGTTAGATAATGAGTATAAAGTGACGACGACAACTATGAGGAAGAGAGAGAGAGGAATCGAAAATCGTTTTCTGTTTGCTCTCAGAAAATGCAATTATCATATCGAATTTCTTTCTTGTCCCATCTTTCTCCGGCTGCTTCTTGTTTCTTTTTCAGAGTCTTATGATGATTTCCCCAGAATTCATATAAGCCCATTGAAGTATGTGGAGAAGAAGAAACAGAAGATGTGTGGGAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAATACCGTACACCTTCAAAC</pcr_primer_p1>
		<pcr_primer_p2>GAAGACAACTCATCAGCTTCTAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TAGAATACCGTACACCTTCAAACCCCCTTTGTAGAGCACAGATTCAACCTACAGTTATCTCCATAGTTTTTCTCCGAATCCCTTCTTTCTGAAATTCTATTTTGGCTGTTTTCCAACTCGTTGCCATCATCATCAACTCATTTCTGTTGAAAAGTCAGCAGCCCCAAATGAAGTTCCTTTCCCCTCACTCTCTTTTCATTTCATATATCAACGTTTTTGCTCAAATTTAGAAGCTGATGAGTTGTCTTC</canonical_amplicon>
		<polymorphic_amplicon>TAGAATACCGTACACCTTCAAACCCCCTTTGTAGAGCACAGATTCAACCTACAGTTATCTCCATAGTTTTTCTCCGAATCCCTTCTTTCTGAAATTCTATTTTGGCTGTTTTCCAACTCGTTGCCWTCATCATCAACTCATTTCTGTTGAAAAGTCAGCAGCCCCAAATGAAGTTCCTTTCCCCTCACTCTCTTTTCATTTCATATATCAACGTTTTTGCTCAAATTTAGAAGCTGATGAGTTGTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38053</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>175107</contig_pos>
        <strand></strand>
        <context>TCTTCTTTCC[A/G]ACTGACCGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTATCAATATTTTGACACAGTTGTAACAGGTGATCTCCTCTTCTTTCC</left_flank>
        <right_flank>ACTGACCGAGAGTGTGATAAATCGAAAGATGGGGGATAGGAGACCATCGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAGTGTCCCACATCTTCTGGGTCCGGGGCTTTGTTTTTTGAAATTTTCAGAATCTTTTCTGTTTGCTGAAAGTTCAAGTCTAGGGCGATCCAATAATCTAAACATTTCTAGAGCATTGTCGTAGAGCTCCTCCTCTTCATATCGATCGATCTGCTTCCTTTTCTCTCTTCTCCTAATAAAACTTCTCCGATTCAAATTGAAATTCAAACTCTCATGATGACATCAGTGTACATAAATACACCTCGTGTCACTTTTCAAACACATTCCTTGATCCTTCTCATTTCCATTCATTTTGCTCTCTAATTAGTCGTCTACCGCGTGCTTGTTAGTTAGGCTTGCAAATCGAAACTAGATTCGTTGATTCATTTTTCAACTTTTAGGATCGGCATCGATTTCCCAGTTTCATCCTAAGCCTATCGATTGCTCACTCTTGTCATCTCACCGGTCCTTTATCAATATTTTGACACAGTTGTAACAGGTGATCTCCTCTTCTTTCCAACTGACCGAGAGTGTGATAAATCGAAAGATGGGGGATAGGAGACCATCGTAAATCATATAAGCTCCTAAAGTTTTTGAATTGATGGGTATTGATAGGAAGTTGGCTCTGTGGAGTCTCAAAAAACTACATTTTGTTTTTTTTTCAGTTACCGTAAAACCTGTAATAGAGGGGCCCAACTTTGACTTTGAAGCAATATATCTCGATTCCTGCCAATGATATAAAAAGGTGGTCAACTGATGAACTGTTTTTTTTCTATTCCGAACATTTTATCAGTTGACACATTATTGATATCTTGCATAGGAGCCAAGAAAAACTAATATTGTGGGGGGCCTTACGATTGCAGTTTGTACGGTATTACGAGAGATTTGGAAAAGTAGGTTATTGTTGTCTGATGATTTTGAAAATCTAGGAAATTTCATCTACTTTTTGTAGTTTATTGATTTTCGAACAGTTTCTCTGTAAGGTAGAGCTGCCACATAGAAGCTGAAATTATCTGAAA</canonical>
            <polymorphic>TTCAGTGTCCCACATCTTCTGGGTCCGGGGCTTTGTTTTTTGAAATTTTCAGAATCTTTTCTGTTTGCTGAAAGTTCAAGTCTAGGGCGATCCAATAATCTAAACATTTCTAGAGCATTGTCGTAGAGCTCCTCCTCTTCATATCGATCGATCTGCTTCCTTTTCTCTCTTCTCCTAATAAAACTTCTCCGATTCAAATTGAAATTCAAACTCTCATGATGACATCAGTGTACATAAATACACCTCGTGTCACTTTTCAAACACATTCCTTGATCCTTCTCATTTCCATTCATTTTGCTCTCTAATTAGTCGTCTACCGCGTGCTTGTTAGTTAGGCTTGCAAATCGAAACTAGATTCGTTGATTCATTTTTCAACTTTTAGGATCGGCATCGATTTCCCAGTTTCATCCTAAGCCTATCGATTGCTCACTCTTGTCATCTCACCGGTCCTTTATCAATATTTTGACACAGTTGTAACAGGTGATCTCCTCTTCTTTCCRACTGACCGAGAGTGTGATAAATCGAAAGATGGGGGATAGGAGACCATCGTAAATCATATAAGCTCCTAAAGTTTTTGAATTGATGGGTATTGATAGGAAGTTGGCTCTGTGGAGTCTCAAAAAACTACATTTTGTTTTTTTTTCAGTTACCGTAAAACCTGTAATAGAGGGGCCCAACTTTGACTTTGAAGCAATATATCTCGATTCCTGCCAATGATATAAAAAGGTGGTCAACTGATGAACTGTTTTTTTTCTATTCCGAACATTTTATCAGTTGACACATTATTGATATCTTGCATAGGAGCCAAGAAAAACTAATATTGTGGGGGGCCTTACGATTGCAGTTTGTACGGTATTACGAGAGATTTGGAAAAGTAGGTTATTGTTGTCTGATGATTTTGAAAATCTAGGAAATTTCATCTACTTTTTGTAGTTTATTGATTTTCGAACAGTTTCTCTGTAAGGTAGAGCTGCCACATAGAAGCTGAAATTATCTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAGATTCGTTGATTCATTTTTC</pcr_primer_p1>
		<pcr_primer_p2>ACTTCCTATCAATACCCATCAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTAGATTCGTTGATTCATTTTTCAACTTTTAGGATCGGCATCGATTTCCCAGTTTCATCCTAAGCCTATCGATTGCTCACTCTTGTCATCTCACCGGTCCTTTATCAATATTTTGACACAGTTGTAACAGGTGATCTCCTCTTCTTTCCAACTGACCGAGAGTGTGATAAATCGAAAGATGGGGGATAGGAGACCATCGTAAATCATATAAGCTCCTAAAGTTTTTGAATTGATGGGTATTGATAGGAAGT</canonical_amplicon>
		<polymorphic_amplicon>CTAGATTCGTTGATTCATTTTTCAACTTTTAGGATCGGCATCGATTTCCCAGTTTCATCCTAAGCCTATCGATTGCTCACTCTTGTCATCTCACCGGTCCTTTATCAATATTTTGACACAGTTGTAACAGGTGATCTCCTCTTCTTTCCRACTGACCGAGAGTGTGATAAATCGAAAGATGGGGGATAGGAGACCATCGTAAATCATATAAGCTCCTAAAGTTTTTGAATTGATGGGTATTGATAGGAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38054</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>175132</contig_pos>
        <strand></strand>
        <context>TGATAAATCG[A/G]AAGATGGGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAACAGGTGATCTCCTCTTCTTTCCAACTGACCGAGAGTGTGATAAATCG</left_flank>
        <right_flank>AAGATGGGGGATAGGAGACCATCGTAAATCATATAAGCTCCTAAAGTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGGGCTTTGTTTTTTGAAATTTTCAGAATCTTTTCTGTTTGCTGAAAGTTCAAGTCTAGGGCGATCCAATAATCTAAACATTTCTAGAGCATTGTCGTAGAGCTCCTCCTCTTCATATCGATCGATCTGCTTCCTTTTCTCTCTTCTCCTAATAAAACTTCTCCGATTCAAATTGAAATTCAAACTCTCATGATGACATCAGTGTACATAAATACACCTCGTGTCACTTTTCAAACACATTCCTTGATCCTTCTCATTTCCATTCATTTTGCTCTCTAATTAGTCGTCTACCGCGTGCTTGTTAGTTAGGCTTGCAAATCGAAACTAGATTCGTTGATTCATTTTTCAACTTTTAGGATCGGCATCGATTTCCCAGTTTCATCCTAAGCCTATCGATTGCTCACTCTTGTCATCTCACCGGTCCTTTATCAATATTTTGACACAGTTGTAACAGGTGATCTCCTCTTCTTTCCAACTGACCGAGAGTGTGATAAATCGAAAGATGGGGGATAGGAGACCATCGTAAATCATATAAGCTCCTAAAGTTTTTGAATTGATGGGTATTGATAGGAAGTTGGCTCTGTGGAGTCTCAAAAAACTACATTTTGTTTTTTTTTCAGTTACCGTAAAACCTGTAATAGAGGGGCCCAACTTTGACTTTGAAGCAATATATCTCGATTCCTGCCAATGATATAAAAAGGTGGTCAACTGATGAACTGTTTTTTTTCTATTCCGAACATTTTATCAGTTGACACATTATTGATATCTTGCATAGGAGCCAAGAAAAACTAATATTGTGGGGGGCCTTACGATTGCAGTTTGTACGGTATTACGAGAGATTTGGAAAAGTAGGTTATTGTTGTCTGATGATTTTGAAAATCTAGGAAATTTCATCTACTTTTTGTAGTTTATTGATTTTCGAACAGTTTCTCTGTAAGGTAGAGCTGCCACATAGAAGCTGAAATTATCTGAAATTAGAGTCAATTCACTTTATTGAAG</canonical>
            <polymorphic>CGGGGCTTTGTTTTTTGAAATTTTCAGAATCTTTTCTGTTTGCTGAAAGTTCAAGTCTAGGGCGATCCAATAATCTAAACATTTCTAGAGCATTGTCGTAGAGCTCCTCCTCTTCATATCGATCGATCTGCTTCCTTTTCTCTCTTCTCCTAATAAAACTTCTCCGATTCAAATTGAAATTCAAACTCTCATGATGACATCAGTGTACATAAATACACCTCGTGTCACTTTTCAAACACATTCCTTGATCCTTCTCATTTCCATTCATTTTGCTCTCTAATTAGTCGTCTACCGCGTGCTTGTTAGTTAGGCTTGCAAATCGAAACTAGATTCGTTGATTCATTTTTCAACTTTTAGGATCGGCATCGATTTCCCAGTTTCATCCTAAGCCTATCGATTGCTCACTCTTGTCATCTCACCGGTCCTTTATCAATATTTTGACACAGTTGTAACAGGTGATCTCCTCTTCTTTCCAACTGACCGAGAGTGTGATAAATCGRAAGATGGGGGATAGGAGACCATCGTAAATCATATAAGCTCCTAAAGTTTTTGAATTGATGGGTATTGATAGGAAGTTGGCTCTGTGGAGTCTCAAAAAACTACATTTTGTTTTTTTTTCAGTTACCGTAAAACCTGTAATAGAGGGGCCCAACTTTGACTTTGAAGCAATATATCTCGATTCCTGCCAATGATATAAAAAGGTGGTCAACTGATGAACTGTTTTTTTTCTATTCCGAACATTTTATCAGTTGACACATTATTGATATCTTGCATAGGAGCCAAGAAAAACTAATATTGTGGGGGGCCTTACGATTGCAGTTTGTACGGTATTACGAGAGATTTGGAAAAGTAGGTTATTGTTGTCTGATGATTTTGAAAATCTAGGAAATTTCATCTACTTTTTGTAGTTTATTGATTTTCGAACAGTTTCTCTGTAAGGTAGAGCTGCCACATAGAAGCTGAAATTATCTGAAATTAGAGTCAATTCACTTTATTGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>244 197 179 120 103 79 46 28 4</canonical_bands>
                <polymorphic_bands>282 244 197 120 79 46 28 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGATTCGTTGATTCATTTTTC</pcr_primer_p1>
		<pcr_primer_p2>ACTTCCTATCAATACCCATCAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTAGATTCGTTGATTCATTTTTCAACTTTTAGGATCGGCATCGATTTCCCAGTTTCATCCTAAGCCTATCGATTGCTCACTCTTGTCATCTCACCGGTCCTTTATCAATATTTTGACACAGTTGTAACAGGTGATCTCCTCTTCTTTCCAACTGACCGAGAGTGTGATAAATCGAAAGATGGGGGATAGGAGACCATCGTAAATCATATAAGCTCCTAAAGTTTTTGAATTGATGGGTATTGATAGGAAGT</canonical_amplicon>
		<polymorphic_amplicon>CTAGATTCGTTGATTCATTTTTCAACTTTTAGGATCGGCATCGATTTCCCAGTTTCATCCTAAGCCTATCGATTGCTCACTCTTGTCATCTCACCGGTCCTTTATCAATATTTTGACACAGTTGTAACAGGTGATCTCCTCTTCTTTCCAACTGACCGAGAGTGTGATAAATCGRAAGATGGGGGATAGGAGACCATCGTAAATCATATAAGCTCCTAAAGTTTTTGAATTGATGGGTATTGATAGGAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38055</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>175170</contig_pos>
        <strand></strand>
        <context>ATCATATAAG[C/A]TCCYAAAGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TGTGATAAATCGAAAGATGGGGGATAGGAGACCATCGTAAATCATATAAG</left_flank>
        <right_flank>TCCTAAAGTTTTTGAATTGATGGGTATTGATAGGAAGTTGGCTCTGTGGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGCTGAAAGTTCAAGTCTAGGGCGATCCAATAATCTAAACATTTCTAGAGCATTGTCGTAGAGCTCCTCCTCTTCATATCGATCGATCTGCTTCCTTTTCTCTCTTCTCCTAATAAAACTTCTCCGATTCAAATTGAAATTCAAACTCTCATGATGACATCAGTGTACATAAATACACCTCGTGTCACTTTTCAAACACATTCCTTGATCCTTCTCATTTCCATTCATTTTGCTCTCTAATTAGTCGTCTACCGCGTGCTTGTTAGTTAGGCTTGCAAATCGAAACTAGATTCGTTGATTCATTTTTCAACTTTTAGGATCGGCATCGATTTCCCAGTTTCATCCTAAGCCTATCGATTGCTCACTCTTGTCATCTCACCGGTCCTTTATCAATATTTTGACACAGTTGTAACAGGTGATCTCCTCTTCTTTCCAACTGACCGAGAGTGTGATAAATCGAAAGATGGGGGATAGGAGACCATCGTAAATCATATAAGCTCCTAAAGTTTTTGAATTGATGGGTATTGATAGGAAGTTGGCTCTGTGGAGTCTCAAAAAACTACATTTTGTTTTTTTTTCAGTTACCGTAAAACCTGTAATAGAGGGGCCCAACTTTGACTTTGAAGCAATATATCTCGATTCCTGCCAATGATATAAAAAGGTGGTCAACTGATGAACTGTTTTTTTTCTATTCCGAACATTTTATCAGTTGACACATTATTGATATCTTGCATAGGAGCCAAGAAAAACTAATATTGTGGGGGGCCTTACGATTGCAGTTTGTACGGTATTACGAGAGATTTGGAAAAGTAGGTTATTGTTGTCTGATGATTTTGAAAATCTAGGAAATTTCATCTACTTTTTGTAGTTTATTGATTTTCGAACAGTTTCTCTGTAAGGTAGAGCTGCCACATAGAAGCTGAAATTATCTGAAATTAGAGTCAATTCACTTTATTGAAGCCCGGTCCCCCAAAAACTTTGGCGTCTACATTATCGAT</canonical>
            <polymorphic>TTTGCTGAAAGTTCAAGTCTAGGGCGATCCAATAATCTAAACATTTCTAGAGCATTGTCGTAGAGCTCCTCCTCTTCATATCGATCGATCTGCTTCCTTTTCTCTCTTCTCCTAATAAAACTTCTCCGATTCAAATTGAAATTCAAACTCTCATGATGACATCAGTGTACATAAATACACCTCGTGTCACTTTTCAAACACATTCCTTGATCCTTCTCATTTCCATTCATTTTGCTCTCTAATTAGTCGTCTACCGCGTGCTTGTTAGTTAGGCTTGCAAATCGAAACTAGATTCGTTGATTCATTTTTCAACTTTTAGGATCGGCATCGATTTCCCAGTTTCATCCTAAGCCTATCGATTGCTCACTCTTGTCATCTCACCGGTCCTTTATCAATATTTTGACACAGTTGTAACAGGTGATCTCCTCTTCTTTCCAACTGACCGAGAGTGTGATAAATCGAAAGATGGGGGATAGGAGACCATCGTAAATCATATAAGMTCCTAAAGTTTTTGAATTGATGGGTATTGATAGGAAGTTGGCTCTGTGGAGTCTCAAAAAACTACATTTTGTTTTTTTTTCAGTTACCGTAAAACCTGTAATAGAGGGGCCCAACTTTGACTTTGAAGCAATATATCTCGATTCCTGCCAATGATATAAAAAGGTGGTCAACTGATGAACTGTTTTTTTTCTATTCCGAACATTTTATCAGTTGACACATTATTGATATCTTGCATAGGAGCCAAGAAAAACTAATATTGTGGGGGGCCTTACGATTGCAGTTTGTACGGTATTACGAGAGATTTGGAAAAGTAGGTTATTGTTGTCTGATGATTTTGAAAATCTAGGAAATTTCATCTACTTTTTGTAGTTTATTGATTTTCGAACAGTTTCTCTGTAAGGTAGAGCTGCCACATAGAAGCTGAAATTATCTGAAATTAGAGTCAATTCACTTTATTGAAGCCCGGTCCCCCAAAAACTTTGGCGTCTACATTATCGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>434 408 79 65 14</canonical_bands>
                <polymorphic_bands>842 79 65 14</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>208 148 140 132 78 68 65 42 41 38 26 14</canonical_bands>
                <polymorphic_bands>208 190 140 132 78 68 65 41 38 26 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTCCCAGTTTCATCCTAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAGACTCCACAGAGC</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>GATTTCCCAGTTTCATCCTAAGCCTATCGATTGCTCACTCTTGTCATCTCACCGGTCCTTTATCAATATTTTGACACAGTTGTAACAGGTGATCTCCTCTTCTTTCCAACTGACCGAGAGTGTGATAAATCGAAAGATGGGGGATAGGAGACCATCGTAAATCATATAAGCTCCTAAAGTTTTTGAATTGATGGGTATTGATAGGAAGTTGGCTCTGTGGAGTCTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTCCCAGTTTCATCCTAAGCCTATCGATTGCTCACTCTTGTCATCTCACCGGTCCTTTATCAATATTTTGACACAGTTGTAACAGGTGATCTCCTCTTCTTTCCAACTGACCGAGAGTGTGATAAATCGAAAGATGGGGGATAGGAGACCATCGTAAATCATATAAGMTCCTAAAGTTTTTGAATTGATGGGTATTGATAGGAAGTTGGCTCTGTGGAGTCTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38056</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>175174</contig_pos>
        <strand></strand>
        <context>TATAAGMTCC[T/C]AAAGTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATAAATCGAAAGATGGGGGATAGGAGACCATCGTAAATCATATAAGCTCC</left_flank>
        <right_flank>AAAGTTTTTGAATTGATGGGTATTGATAGGAAGTTGGCTCTGTGGAGTCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAAAGTTCAAGTCTAGGGCGATCCAATAATCTAAACATTTCTAGAGCATTGTCGTAGAGCTCCTCCTCTTCATATCGATCGATCTGCTTCCTTTTCTCTCTTCTCCTAATAAAACTTCTCCGATTCAAATTGAAATTCAAACTCTCATGATGACATCAGTGTACATAAATACACCTCGTGTCACTTTTCAAACACATTCCTTGATCCTTCTCATTTCCATTCATTTTGCTCTCTAATTAGTCGTCTACCGCGTGCTTGTTAGTTAGGCTTGCAAATCGAAACTAGATTCGTTGATTCATTTTTCAACTTTTAGGATCGGCATCGATTTCCCAGTTTCATCCTAAGCCTATCGATTGCTCACTCTTGTCATCTCACCGGTCCTTTATCAATATTTTGACACAGTTGTAACAGGTGATCTCCTCTTCTTTCCAACTGACCGAGAGTGTGATAAATCGAAAGATGGGGGATAGGAGACCATCGTAAATCATATAAGCTCCTAAAGTTTTTGAATTGATGGGTATTGATAGGAAGTTGGCTCTGTGGAGTCTCAAAAAACTACATTTTGTTTTTTTTTCAGTTACCGTAAAACCTGTAATAGAGGGGCCCAACTTTGACTTTGAAGCAATATATCTCGATTCCTGCCAATGATATAAAAAGGTGGTCAACTGATGAACTGTTTTTTTTCTATTCCGAACATTTTATCAGTTGACACATTATTGATATCTTGCATAGGAGCCAAGAAAAACTAATATTGTGGGGGGCCTTACGATTGCAGTTTGTACGGTATTACGAGAGATTTGGAAAAGTAGGTTATTGTTGTCTGATGATTTTGAAAATCTAGGAAATTTCATCTACTTTTTGTAGTTTATTGATTTTCGAACAGTTTCTCTGTAAGGTAGAGCTGCCACATAGAAGCTGAAATTATCTGAAATTAGAGTCAATTCACTTTATTGAAGCCCGGTCCCCCAAAAACTTTGGCGTCTACATTATCGATCTGT</canonical>
            <polymorphic>CTGAAAGTTCAAGTCTAGGGCGATCCAATAATCTAAACATTTCTAGAGCATTGTCGTAGAGCTCCTCCTCTTCATATCGATCGATCTGCTTCCTTTTCTCTCTTCTCCTAATAAAACTTCTCCGATTCAAATTGAAATTCAAACTCTCATGATGACATCAGTGTACATAAATACACCTCGTGTCACTTTTCAAACACATTCCTTGATCCTTCTCATTTCCATTCATTTTGCTCTCTAATTAGTCGTCTACCGCGTGCTTGTTAGTTAGGCTTGCAAATCGAAACTAGATTCGTTGATTCATTTTTCAACTTTTAGGATCGGCATCGATTTCCCAGTTTCATCCTAAGCCTATCGATTGCTCACTCTTGTCATCTCACCGGTCCTTTATCAATATTTTGACACAGTTGTAACAGGTGATCTCCTCTTCTTTCCAACTGACCGAGAGTGTGATAAATCGAAAGATGGGGGATAGGAGACCATCGTAAATCATATAAGCTCCYAAAGTTTTTGAATTGATGGGTATTGATAGGAAGTTGGCTCTGTGGAGTCTCAAAAAACTACATTTTGTTTTTTTTTCAGTTACCGTAAAACCTGTAATAGAGGGGCCCAACTTTGACTTTGAAGCAATATATCTCGATTCCTGCCAATGATATAAAAAGGTGGTCAACTGATGAACTGTTTTTTTTCTATTCCGAACATTTTATCAGTTGACACATTATTGATATCTTGCATAGGAGCCAAGAAAAACTAATATTGTGGGGGGCCTTACGATTGCAGTTTGTACGGTATTACGAGAGATTTGGAAAAGTAGGTTATTGTTGTCTGATGATTTTGAAAATCTAGGAAATTTCATCTACTTTTTGTAGTTTATTGATTTTCGAACAGTTTCTCTGTAAGGTAGAGCTGCCACATAGAAGCTGAAATTATCTGAAATTAGAGTCAATTCACTTTATTGAAGCCCGGTCCCCCAAAAACTTTGGCGTCTACATTATCGATCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTCCCAGTTTCATCCTAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAGACTCCACAGAGC</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>GATTTCCCAGTTTCATCCTAAGCCTATCGATTGCTCACTCTTGTCATCTCACCGGTCCTTTATCAATATTTTGACACAGTTGTAACAGGTGATCTCCTCTTCTTTCCAACTGACCGAGAGTGTGATAAATCGAAAGATGGGGGATAGGAGACCATCGTAAATCATATAAGCTCCTAAAGTTTTTGAATTGATGGGTATTGATAGGAAGTTGGCTCTGTGGAGTCTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTCCCAGTTTCATCCTAAGCCTATCGATTGCTCACTCTTGTCATCTCACCGGTCCTTTATCAATATTTTGACACAGTTGTAACAGGTGATCTCCTCTTCTTTCCAACTGACCGAGAGTGTGATAAATCGAAAGATGGGGGATAGGAGACCATCGTAAATCATATAAGCTCCYAAAGTTTTTGAATTGATGGGTATTGATAGGAAGTTGGCTCTGTGGAGTCTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38057</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>175236</contig_pos>
        <strand></strand>
        <context>AAAAAACTAC[A/T]TTTTGTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTGATGGGTATTGATAGGAAGTTGGCTCTGTGGAGTCTCAAAAAACTAC</left_flank>
        <right_flank>TTTTGTTTTTTTTTCAGTTACCGTAAAACCTGTAATAGAGGGGCCCAACT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTCCTCTTCATATCGATCGATCTGCTTCCTTTTCTCTCTTCTCCTAATAAAACTTCTCCGATTCAAATTGAAATTCAAACTCTCATGATGACATCAGTGTACATAAATACACCTCGTGTCACTTTTCAAACACATTCCTTGATCCTTCTCATTTCCATTCATTTTGCTCTCTAATTAGTCGTCTACCGCGTGCTTGTTAGTTAGGCTTGCAAATCGAAACTAGATTCGTTGATTCATTTTTCAACTTTTAGGATCGGCATCGATTTCCCAGTTTCATCCTAAGCCTATCGATTGCTCACTCTTGTCATCTCACCGGTCCTTTATCAATATTTTGACACAGTTGTAACAGGTGATCTCCTCTTCTTTCCAACTGACCGAGAGTGTGATAAATCGAAAGATGGGGGATAGGAGACCATCGTAAATCATATAAGCTCCTAAAGTTTTTGAATTGATGGGTATTGATAGGAAGTTGGCTCTGTGGAGTCTCAAAAAACTACATTTTGTTTTTTTTTCAGTTACCGTAAAACCTGTAATAGAGGGGCCCAACTTTGACTTTGAAGCAATATATCTCGATTCCTGCCAATGATATAAAAAGGTGGTCAACTGATGAACTGTTTTTTTTCTATTCCGAACATTTTATCAGTTGACACATTATTGATATCTTGCATAGGAGCCAAGAAAAACTAATATTGTGGGGGGCCTTACGATTGCAGTTTGTACGGTATTACGAGAGATTTGGAAAAGTAGGTTATTGTTGTCTGATGATTTTGAAAATCTAGGAAATTTCATCTACTTTTTGTAGTTTATTGATTTTCGAACAGTTTCTCTGTAAGGTAGAGCTGCCACATAGAAGCTGAAATTATCTGAAATTAGAGTCAATTCACTTTATTGAAGCCCGGTCCCCCAAAAACTTTGGCGTCTACATTATCGATCTGTCCCATCTCAACGGAACCATGGATGCTCGTGTTAGCCCTAATCCAACTAGGAAATAATGAATA</canonical>
            <polymorphic>TCCTCCTCTTCATATCGATCGATCTGCTTCCTTTTCTCTCTTCTCCTAATAAAACTTCTCCGATTCAAATTGAAATTCAAACTCTCATGATGACATCAGTGTACATAAATACACCTCGTGTCACTTTTCAAACACATTCCTTGATCCTTCTCATTTCCATTCATTTTGCTCTCTAATTAGTCGTCTACCGCGTGCTTGTTAGTTAGGCTTGCAAATCGAAACTAGATTCGTTGATTCATTTTTCAACTTTTAGGATCGGCATCGATTTCCCAGTTTCATCCTAAGCCTATCGATTGCTCACTCTTGTCATCTCACCGGTCCTTTATCAATATTTTGACACAGTTGTAACAGGTGATCTCCTCTTCTTTCCAACTGACCGAGAGTGTGATAAATCGAAAGATGGGGGATAGGAGACCATCGTAAATCATATAAGCTCCTAAAGTTTTTGAATTGATGGGTATTGATAGGAAGTTGGCTCTGTGGAGTCTCAAAAAACTACWTTTTGTTTTTTTTTCAGTTACCGTAAAACCTGTAATAGAGGGGCCCAACTTTGACTTTGAAGCAATATATCTCGATTCCTGCCAATGATATAAAAAGGTGGTCAACTGATGAACTGTTTTTTTTCTATTCCGAACATTTTATCAGTTGACACATTATTGATATCTTGCATAGGAGCCAAGAAAAACTAATATTGTGGGGGGCCTTACGATTGCAGTTTGTACGGTATTACGAGAGATTTGGAAAAGTAGGTTATTGTTGTCTGATGATTTTGAAAATCTAGGAAATTTCATCTACTTTTTGTAGTTTATTGATTTTCGAACAGTTTCTCTGTAAGGTAGAGCTGCCACATAGAAGCTGAAATTATCTGAAATTAGAGTCAATTCACTTTATTGAAGCCCGGTCCCCCAAAAACTTTGGCGTCTACATTATCGATCTGTCCCATCTCAACGGAACCATGGATGCTCGTGTTAGCCCTAATCCAACTAGGAAATAATGAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTGATGGGTATTGATAGGA</pcr_primer_p1>
		<pcr_primer_p2>CTACTTTTCCAAATCTCTCGTAA</pcr_primer_p2>
		<pcr_amplicon_size>302</pcr_amplicon_size>
		<canonical_amplicon>GAATTGATGGGTATTGATAGGAAGTTGGCTCTGTGGAGTCTCAAAAAACTACATTTTGTTTTTTTTTCAGTTACCGTAAAACCTGTAATAGAGGGGCCCAACTTTGACTTTGAAGCAATATATCTCGATTCCTGCCAATGATATAAAAAGGTGGTCAACTGATGAACTGTTTTTTTTCTATTCCGAACATTTTATCAGTTGACACATTATTGATATCTTGCATAGGAGCCAAGAAAAACTAATATTGTGGGGGGCCTTACGATTGCAGTTTGTACGGTATTACGAGAGATTTGGAAAAGTAG</canonical_amplicon>
		<polymorphic_amplicon>GAATTGATGGGTATTGATAGGAAGTTGGCTCTGTGGAGTCTCAAAAAACTACWTTTTGTTTTTTTTTCAGTTACCGTAAAACCTGTAATAGAGGGGCCCAACTTTGACTTTGAAGCAATATATCTCGATTCCTGCCAATGATATAAAAAGGTGGTCAACTGATGAACTGTTTTTTTTCTATTCCGAACATTTTATCAGTTGACACATTATTGATATCTTGCATAGGAGCCAAGAAAAACTAATATTGTGGGGGGCCTTACGATTGCAGTTTGTACGGTATTACGAGAGATTTGGAAAAGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38058</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>175297</contig_pos>
        <strand></strand>
        <context>ttgactttga[A/G]gcaatatatc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCAGTTACCGTAAAACCTGTAATAGAGGGGCCCAACTTTGACTTTGA</left_flank>
        <right_flank>GCAATATATCTCGATTCCTGCCAATGATATAAAAAGGTGGTCAACTGATG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTCAAATTGAAATTCAAACTCTCATGATGACATCAGTGTACATAAATACACCTCGTGTCACTTTTCAAACACATTCCTTGATCCTTCTCATTTCCATTCATTTTGCTCTCTAATTAGTCGTCTACCGCGTGCTTGTTAGTTAGGCTTGCAAATCGAAACTAGATTCGTTGATTCATTTTTCAACTTTTAGGATCGGCATCGATTTCCCAGTTTCATCCTAAGCCTATCGATTGCTCACTCTTGTCATCTCACCGGTCCTTTATCAATATTTTGACACAGTTGTAACAGGTGATCTCCTCTTCTTTCCAACTGACCGAGAGTGTGATAAATCGAAAGATGGGGGATAGGAGACCATCGTAAATCATATAAGCTCCTAAAGTTTTTGAATTGATGGGTATTGATAGGAAGTTGGCTCTGTGGAGTCTCAAAAAACTACATTTTGTTTTTTTTTCAGTTACCGTAAAACCTGTAATAGAGGGGCCCAACTTTGACTTTGAAGCAATATATCTCGATTCCTGCCAATGATATAAAAAGGTGGTCAACTGATGAACTGTTTTTTTTCTATTCCGAACATTTTATCAGTTGACACATTATTGATATCTTGCATAGGAGCCAAGAAAAACTAATATTGTGGGGGGCCTTACGATTGCAGTTTGTACGGTATTACGAGAGATTTGGAAAAGTAGGTTATTGTTGTCTGATGATTTTGAAAATCTAGGAAATTTCATCTACTTTTTGTAGTTTATTGATTTTCGAACAGTTTCTCTGTAAGGTAGAGCTGCCACATAGAAGCTGAAATTATCTGAAATTAGAGTCAATTCACTTTATTGAAGCCCGGTCCCCCAAAAACTTTGGCGTCTACATTATCGATCTGTCCCATCTCAACGGAACCATGGATGCTCGTGTTAGCCCTAATCCAACTAGGAAATAATGAATACATACCAATGTCATCATCTTATTATATAAGCATACACAGACAAATATCCAAATAACTTTTT</canonical>
            <polymorphic>GATTCAAATTGAAATTCAAACTCTCATGATGACATCAGTGTACATAAATACACCTCGTGTCACTTTTCAAACACATTCCTTGATCCTTCTCATTTCCATTCATTTTGCTCTCTAATTAGTCGTCTACCGCGTGCTTGTTAGTTAGGCTTGCAAATCGAAACTAGATTCGTTGATTCATTTTTCAACTTTTAGGATCGGCATCGATTTCCCAGTTTCATCCTAAGCCTATCGATTGCTCACTCTTGTCATCTCACCGGTCCTTTATCAATATTTTGACACAGTTGTAACAGGTGATCTCCTCTTCTTTCCAACTGACCGAGAGTGTGATAAATCGAAAGATGGGGGATAGGAGACCATCGTAAATCATATAAGCTCCTAAAGTTTTTGAATTGATGGGTATTGATAGGAAGTTGGCTCTGTGGAGTCTCAAAAAACTACATTTTGTTTTTTTTTCAGTTACCGTAAAACCTGTAATAGAGGGGCCCAACTTTGACTTTGARGCAATATATCTCGATTCCTGCCAATGATATAAAAAGGTGGTCAACTGATGAACTGTTTTTTTTCTATTCCGAACATTTTATCAGTTGACACATTATTGATATCTTGCATAGGAGCCAAGAAAAACTAATATTGTGGGGGGCCTTACGATTGCAGTTTGTACGGTATTACGAGAGATTTGGAAAAGTAGGTTATTGTTGTCTGATGATTTTGAAAATCTAGGAAATTTCATCTACTTTTTGTAGTTTATTGATTTTCGAACAGTTTCTCTGTAAGGTAGAGCTGCCACATAGAAGCTGAAATTATCTGAAATTAGAGTCAATTCACTTTATTGAAGCCCGGTCCCCCAAAAACTTTGGCGTCTACATTATCGATCTGTCCCATCTCAACGGAACCATGGATGCTCGTGTTAGCCCTAATCCAACTAGGAAATAATGAATACATACCAATGTCATCATCTTATTATATAAGCATACACAGACAAATATCCAAATAACTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTCTGTGGAGTCTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTACTTTTCCAAATCTCTCGTAA</pcr_primer_p2>
		<pcr_amplicon_size>275</pcr_amplicon_size>
		<canonical_amplicon>GCTCTGTGGAGTCTCAAAAAACTACATTTTGTTTTTTTTTCAGTTACCGTAAAACCTGTAATAGAGGGGCCCAACTTTGACTTTGAAGCAATATATCTCGATTCCTGCCAATGATATAAAAAGGTGGTCAACTGATGAACTGTTTTTTTTCTATTCCGAACATTTTATCAGTTGACACATTATTGATATCTTGCATAGGAGCCAAGAAAAACTAATATTGTGGGGGGCCTTACGATTGCAGTTTGTACGGTATTACGAGAGATTTGGAAAAGTAG</canonical_amplicon>
		<polymorphic_amplicon>GCTCTGTGGAGTCTCAAAAAACTACATTTTGTTTTTTTTTCAGTTACCGTAAAACCTGTAATAGAGGGGCCCAACTTTGACTTTGARGCAATATATCTCGATTCCTGCCAATGATATAAAAAGGTGGTCAACTGATGAACTGTTTTTTTTCTATTCCGAACATTTTATCAGTTGACACATTATTGATATCTTGCATAGGAGCCAAGAAAAACTAATATTGTGGGGGGCCTTACGATTGCAGTTTGTACGGTATTACGAGAGATTTGGAAAAGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38059</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>175428</contig_pos>
        <strand></strand>
        <context>aaaactaata[T/G]tgtggggggc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TCAGTTGACACATTATTGATATCTTGCATAGGAGCCAAGAAAAACTAATA</left_flank>
        <right_flank>TGTGGGGGGCCTTACGATTGCAGTTTGTACGGTATTACGAGAGATTTGGA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCTTGTTAGTTAGGCTTGCAAATCGAAACTAGATTCGTTGATTCATTTTTCAACTTTTAGGATCGGCATCGATTTCCCAGTTTCATCCTAAGCCTATCGATTGCTCACTCTTGTCATCTCACCGGTCCTTTATCAATATTTTGACACAGTTGTAACAGGTGATCTCCTCTTCTTTCCAACTGACCGAGAGTGTGATAAATCGAAAGATGGGGGATAGGAGACCATCGTAAATCATATAAGCTCCTAAAGTTTTTGAATTGATGGGTATTGATAGGAAGTTGGCTCTGTGGAGTCTCAAAAAACTACATTTTGTTTTTTTTTCAGTTACCGTAAAACCTGTAATAGAGGGGCCCAACTTTGACTTTGAAGCAATATATCTCGATTCCTGCCAATGATATAAAAAGGTGGTCAACTGATGAACTGTTTTTTTTCTATTCCGAACATTTTATCAGTTGACACATTATTGATATCTTGCATAGGAGCCAAGAAAAACTAATATTGTGGGGGGCCTTACGATTGCAGTTTGTACGGTATTACGAGAGATTTGGAAAAGTAGGTTATTGTTGTCTGATGATTTTGAAAATCTAGGAAATTTCATCTACTTTTTGTAGTTTATTGATTTTCGAACAGTTTCTCTGTAAGGTAGAGCTGCCACATAGAAGCTGAAATTATCTGAAATTAGAGTCAATTCACTTTATTGAAGCCCGGTCCCCCAAAAACTTTGGCGTCTACATTATCGATCTGTCCCATCTCAACGGAACCATGGATGCTCGTGTTAGCCCTAATCCAACTAGGAAATAATGAATACATACCAATGTCATCATCTTATTATATAAGCATACACAGACAAATATCCAAATAACTTTTTGCCATCTTATTCTTCTTCTCACATCCATCGAATACTAATTCCTTTTCCTTCCCATCTTCGTCTTTCACACCGTTATGAATTTCAATTTTTCTTATTCTCCTTCTGGAAGCTCCAGAAAAAGAGACACGAAT</canonical>
            <polymorphic>TGCTTGTTAGTTAGGCTTGCAAATCGAAACTAGATTCGTTGATTCATTTTTCAACTTTTAGGATCGGCATCGATTTCCCAGTTTCATCCTAAGCCTATCGATTGCTCACTCTTGTCATCTCACCGGTCCTTTATCAATATTTTGACACAGTTGTAACAGGTGATCTCCTCTTCTTTCCAACTGACCGAGAGTGTGATAAATCGAAAGATGGGGGATAGGAGACCATCGTAAATCATATAAGCTCCTAAAGTTTTTGAATTGATGGGTATTGATAGGAAGTTGGCTCTGTGGAGTCTCAAAAAACTACATTTTGTTTTTTTTTCAGTTACCGTAAAACCTGTAATAGAGGGGCCCAACTTTGACTTTGAAGCAATATATCTCGATTCCTGCCAATGATATAAAAAGGTGGTCAACTGATGAACTGTTTTTTTTCTATTCCGAACATTTTATCAGTTGACACATTATTGATATCTTGCATAGGAGCCAAGAAAAACTAATAKTGTGGGGGGCCTTACGATTGCAGTTTGTACGGTATTACGAGAGATTTGGAAAAGTAGGTTATTGTTGTCTGATGATTTTGAAAATCTAGGAAATTTCATCTACTTTTTGTAGTTTATTGATTTTCGAACAGTTTCTCTGTAAGGTAGAGCTGCCACATAGAAGCTGAAATTATCTGAAATTAGAGTCAATTCACTTTATTGAAGCCCGGTCCCCCAAAAACTTTGGCGTCTACATTATCGATCTGTCCCATCTCAACGGAACCATGGATGCTCGTGTTAGCCCTAATCCAACTAGGAAATAATGAATACATACCAATGTCATCATCTTATTATATAAGCATACACAGACAAATATCCAAATAACTTTTTGCCATCTTATTCTTCTTCTCACATCCATCGAATACTAATTCCTTTTCCTTCCCATCTTCGTCTTTCACACCGTTATGAATTTCAATTTTTCTTATTCTCCTTCTGGAAGCTCCAGAAAAAGAGACACGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 360 138</canonical_bands>
                <polymorphic_bands>862 138</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTCTGTGGAGTCTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTACTTTTCCAAATCTCTCGTAA</pcr_primer_p2>
		<pcr_amplicon_size>275</pcr_amplicon_size>
		<canonical_amplicon>GCTCTGTGGAGTCTCAAAAAACTACATTTTGTTTTTTTTTCAGTTACCGTAAAACCTGTAATAGAGGGGCCCAACTTTGACTTTGAAGCAATATATCTCGATTCCTGCCAATGATATAAAAAGGTGGTCAACTGATGAACTGTTTTTTTTCTATTCCGAACATTTTATCAGTTGACACATTATTGATATCTTGCATAGGAGCCAAGAAAAACTAATATTGTGGGGGGCCTTACGATTGCAGTTTGTACGGTATTACGAGAGATTTGGAAAAGTAG</canonical_amplicon>
		<polymorphic_amplicon>GCTCTGTGGAGTCTCAAAAAACTACATTTTGTTTTTTTTTCAGTTACCGTAAAACCTGTAATAGAGGGGCCCAACTTTGACTTTGAAGCAATATATCTCGATTCCTGCCAATGATATAAAAAGGTGGTCAACTGATGAACTGTTTTTTTTCTATTCCGAACATTTTATCAGTTGACACATTATTGATATCTTGCATAGGAGCCAAGAAAAACTAATAKTGTGGGGGGCCTTACGATTGCAGTTTGTACGGTATTACGAGAGATTTGGAAAAGTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38060</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>200644</contig_pos>
        <strand>+</strand>
        <context>TTGAGGAAAA[C/G]AGAGAGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGATGAACCTTCTTCTTTTCAAATGAACCGAAAACGAAAATTGAGGAAAA</left_flank>
        <right_flank>AGAGAGAAAAAATAGAGAACAATTGAACTTTCGTTTGACCTCCTACTGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCGAATCAAGCTCCACATCTGCTCCATTATTAAAGCCCCAAAAATTAAACTGAAAACAAGTGATAGGCTCTATAACTTATACTAGAATATTCTATAGAATTAAAACTATTCTTCTGGGCCACCCGTTGTGTTTCTGACCACACATCAATGTCAGACTCTCAATTTCTTTATTATTTATTCTCACCTTTTCTCCAAATCCTAACAATAGAAAACACAATTAAAATACTCTCAATAGAATGTTGAACCAGTTGACCTACTCTCTTCGCTCCGAGAAAGGACATACTTTCTTCAAAAAAAAGGTGAAAACGAGGAGAAAGATTGCTCAATTTCCGCCAGAGTAATTACGCAATGTGTTCTGTCTGTCTGTTGGGTTTTGAATAATCCCGAATACAAAAAAAACGAAGACGGATGGTTTGGGTGACACCTTGAGACATGCCGAATGATGATCGATGAACCTTCTTCTTTTCAAATGAACCGAAAACGAAAATTGAGGAAAACAGAGAGAAAAAATAGAGAACAATTGAACTTTCGTTTGACCTCCTACTGTTAGGTTTTCGAGATGAGAAGGATTGTGTCATACTCTCGAGAAAGACACATGTCAATCCGGAGAAACGCAATGAGGTTTCGAGAAAGGGCTGGGGCGTCTTTGGCGTATTTTCGTTTAAAAAAAAAGGGTAAAACAGACGTATTGGAACACCACCGATCAAGCTAGTTTTCTGAATGAAATTCCAATTCAGAAATTTTTAAATATAACATTTTAATTGAGCATTTCTAAATTCTAAGAATTTCGAAGATTTTGACGATGTAAGAATTTTAGCTCAGAAAATTTGATGAAATATGAAAATGATATCTAATTTTGATTATATTCAGATTTTGGAGTTTCTTAATCTTTCCGATTGAGGATTCTGTGATTGGAAGATTTGAAATTAAATTATTCTGAGGATCGGAAAAACGGAGATTCTGAAGTTGAAAAATATGGAATATTCTCACGGAACGGA</canonical>
            <polymorphic>CATCGAATCAAGCTCCACATCTGCTCCATTATTAAAGCCCCAAAAATTAAACTGAAAACAAGTGATAGGCTCTATAACTTATACTAGAATATTCTATAGAATTAAAACTATTCTTCTGGGCCACCCGTTGTGTTTCTGACCACACATCAATGTCAGACTCTCAATTTCTTTATTATTTATTCTCACCTTTTCTCCAAATCCTAACAATAGAAAACACAATTAAAATACTCTCAATAGAATGTTGAACCAGTTGACCTACTCTCTTCGCTCCGAGAAAGGACATACTTTCTTCAAAAAAAAGGTGAAAACGAGGAGAAAGATTGCTCAATTTCCGCCAGAGTAATTACGCAATGTGTTCTGTCTGTCTGTTGGGTTTTGAATAATCCCGAATACAAAAAAAACGAAGACGGATGGTTTGGGTGACACCTTGAGACATGCCGAATGATGATCGATGAACCTTCTTCTTTTCAAATGAACCGAAAACGAAAATTGAGGAAAASAGAGAGAAAAAATAGAGAACAATTGAACTTTCGTTTGACCTCCTACTGTTAGGTTTTCGAGATGAGAAGGATTGTGTCATACTCTCGAGAAAGACACATGTCAATCCGGAGAAACGCAATGAGGTTTCGAGAAAGGGCTGGGGCGTCTTTGGCGTATTTTCGTTTAAAAAAAAAGGGTAAAACAGACGTATTGGAACACCACCGATCAAGCTAGTTTTCTGAATGAAATTCCAATTCAGAAATTTTTAAATATAACATTTTAATTGAGCATTTCTAAATTCTAAGAATTTCGAAGATTTTGACGATGTAAGAATTTTAGCTCAGAAAATTTGATGAAATATGAAAATGATATCTAATTTTGATTATATTCAGATTTTGGAGTTTCTTAATCTTTCCGATTGAGGATTCTGTGATTGGAAGATTTGAAATTAAATTATTCTGAGGATCGGAAAAACGGAGATTCTGAAGTTGAAAAATATGGAATATTCTCACGGAACGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTAATTACGCAATGTGTTCTGT</pcr_primer_p1>
		<pcr_primer_p2>AGAGTATGACACAATCCTTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AGTAATTACGCAATGTGTTCTGTCTGTCTGTTGGGTTTTGAATAATCCCGAATACAAAAAAAACGAAGACGGATGGTTTGGGTGACACCTTGAGACATGCCGAATGATGATCGATGAACCTTCTTCTTTTCAAATGAACCGAAAACGAAAATTGAGGAAAACAGAGAGAAAAAATAGAGAACAATTGAACTTTCGTTTGACCTCCTACTGTTAGGTTTTCGAGATGAGAAGGATTGTGTCATACTCT</canonical_amplicon>
		<polymorphic_amplicon>AGTAATTACGCAATGTGTTCTGTCTGTCTGTTGGGTTTTGAATAATCCCGAATACAAAAAAAACGAAGACGGATGGTTTGGGTGACACCTTGAGACATGCCGAATGATGATCGATGAACCTTCTTCTTTTCAAATGAACCGAAAACGAAAATTGAGGAAAASAGAGAGAAAAAATAGAGAACAATTGAACTTTCGTTTGACCTCCTACTGTTAGGTTTTCGAGATGAGAAGGATTGTGTCATACTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38061</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>200658</contig_pos>
        <strand>+</strand>
        <context>GAGAAAAAAT[A/G]GAGAACAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTTCAAATGAACCGAAAACGAAAATTGAGGAAAACAGAGAGAAAAAAT</left_flank>
        <right_flank>GAGAACAATTGAACTTTCGTTTGACCTCCTACTGTTAGGTTTTCGAGATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCACATCTGCTCCATTATTAAAGCCCCAAAAATTAAACTGAAAACAAGTGATAGGCTCTATAACTTATACTAGAATATTCTATAGAATTAAAACTATTCTTCTGGGCCACCCGTTGTGTTTCTGACCACACATCAATGTCAGACTCTCAATTTCTTTATTATTTATTCTCACCTTTTCTCCAAATCCTAACAATAGAAAACACAATTAAAATACTCTCAATAGAATGTTGAACCAGTTGACCTACTCTCTTCGCTCCGAGAAAGGACATACTTTCTTCAAAAAAAAGGTGAAAACGAGGAGAAAGATTGCTCAATTTCCGCCAGAGTAATTACGCAATGTGTTCTGTCTGTCTGTTGGGTTTTGAATAATCCCGAATACAAAAAAAACGAAGACGGATGGTTTGGGTGACACCTTGAGACATGCCGAATGATGATCGATGAACCTTCTTCTTTTCAAATGAACCGAAAACGAAAATTGAGGAAAACAGAGAGAAAAAATAGAGAACAATTGAACTTTCGTTTGACCTCCTACTGTTAGGTTTTCGAGATGAGAAGGATTGTGTCATACTCTCGAGAAAGACACATGTCAATCCGGAGAAACGCAATGAGGTTTCGAGAAAGGGCTGGGGCGTCTTTGGCGTATTTTCGTTTAAAAAAAAAGGGTAAAACAGACGTATTGGAACACCACCGATCAAGCTAGTTTTCTGAATGAAATTCCAATTCAGAAATTTTTAAATATAACATTTTAATTGAGCATTTCTAAATTCTAAGAATTTCGAAGATTTTGACGATGTAAGAATTTTAGCTCAGAAAATTTGATGAAATATGAAAATGATATCTAATTTTGATTATATTCAGATTTTGGAGTTTCTTAATCTTTCCGATTGAGGATTCTGTGATTGGAAGATTTGAAATTAAATTATTCTGAGGATCGGAAAAACGGAGATTCTGAAGTTGAAAAATATGGAATATTCTCACGGAACGGAAGTTTTCTAATTTC</canonical>
            <polymorphic>CCACATCTGCTCCATTATTAAAGCCCCAAAAATTAAACTGAAAACAAGTGATAGGCTCTATAACTTATACTAGAATATTCTATAGAATTAAAACTATTCTTCTGGGCCACCCGTTGTGTTTCTGACCACACATCAATGTCAGACTCTCAATTTCTTTATTATTTATTCTCACCTTTTCTCCAAATCCTAACAATAGAAAACACAATTAAAATACTCTCAATAGAATGTTGAACCAGTTGACCTACTCTCTTCGCTCCGAGAAAGGACATACTTTCTTCAAAAAAAAGGTGAAAACGAGGAGAAAGATTGCTCAATTTCCGCCAGAGTAATTACGCAATGTGTTCTGTCTGTCTGTTGGGTTTTGAATAATCCCGAATACAAAAAAAACGAAGACGGATGGTTTGGGTGACACCTTGAGACATGCCGAATGATGATCGATGAACCTTCTTCTTTTCAAATGAACCGAAAACGAAAATTGAGGAAAACAGAGAGAAAAAATRGAGAACAATTGAACTTTCGTTTGACCTCCTACTGTTAGGTTTTCGAGATGAGAAGGATTGTGTCATACTCTCGAGAAAGACACATGTCAATCCGGAGAAACGCAATGAGGTTTCGAGAAAGGGCTGGGGCGTCTTTGGCGTATTTTCGTTTAAAAAAAAAGGGTAAAACAGACGTATTGGAACACCACCGATCAAGCTAGTTTTCTGAATGAAATTCCAATTCAGAAATTTTTAAATATAACATTTTAATTGAGCATTTCTAAATTCTAAGAATTTCGAAGATTTTGACGATGTAAGAATTTTAGCTCAGAAAATTTGATGAAATATGAAAATGATATCTAATTTTGATTATATTCAGATTTTGGAGTTTCTTAATCTTTCCGATTGAGGATTCTGTGATTGGAAGATTTGAAATTAAATTATTCTGAGGATCGGAAAAACGGAGATTCTGAAGTTGAAAAATATGGAATATTCTCACGGAACGGAAGTTTTCTAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGAACCTTCTTCTTTTCAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTGTTCCAATACGTCTGTTTTAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATGAACCTTCTTCTTTTCAAATGAACCGAAAACGAAAATTGAGGAAAACAGAGAGAAAAAATAGAGAACAATTGAACTTTCGTTTGACCTCCTACTGTTAGGTTTTCGAGATGAGAAGGATTGTGTCATACTCTCGAGAAAGACACATGTCAATCCGGAGAAACGCAATGAGGTTTCGAGAAAGGGCTGGGGCGTCTTTGGCGTATTTTCGTTTAAAAAAAAAGGGTAAAACAGACGTATTGGAACAC</canonical_amplicon>
		<polymorphic_amplicon>GATGAACCTTCTTCTTTTCAAATGAACCGAAAACGAAAATTGAGGAAAACAGAGAGAAAAAATRGAGAACAATTGAACTTTCGTTTGACCTCCTACTGTTAGGTTTTCGAGATGAGAAGGATTGTGTCATACTCTCGAGAAAGACACATGTCAATCCGGAGAAACGCAATGAGGTTTCGAGAAAGGGCTGGGGCGTCTTTGGCGTATTTTCGTTTAAAAAAAAAGGGTAAAACAGACGTATTGGAACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38062</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>221897</contig_pos>
        <strand></strand>
        <context>AAAAAAAGCG[A/G]aaactggcac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCGTTTTTCTACTAAAAATCCATTACGATTTCTACATAAAAAAAAGCG</left_flank>
        <right_flank>AAACTGGCACCTGAAAATTTCGCGGACGCCGTTTGTGTCGATTTACGAGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAACCTTTCTGCGTCTCCATCATCTACTTTCTCTCCCCTGATTTCCTATTATATTTACTTCGTTCTCATATTTATTTCAAATTTTCCCCCTAACCTAACTTATTGCTCATCCTTATTATTACAGGTAGACTTCACCACGAAGTAGTTCCCGAACCATCATGTGGTTCGAGGAGAGTAGTTGGTCGAACCTCCGACTCACGGATATCCAGGAGGAATGGAGAGATCTGTGGCCGTCAAAAATCGAATTTATCACCTCAGCGATGGCATATCTATTTGCAATGACTAACTTTTTGAATTTGCCAAAATTGACACTCGAAAATGGAGGAGGTGAGTGATAAAGGCTTCAAGAAGGGGGTCCCTAGGGGGGAAACTTCAATTAGAGGGGGCAATTGTACTTTTCGTGGGTCCTCTGTGAACGGATCTCCCTATTGAGCATTTTTCAGTGAAATTTCGTTTTTCTACTAAAAATCCATTACGATTTCTACATAAAAAAAAGCGAAAACTGGCACCTGAAAATTTCGCGGACGCCGTTTGTGTCGATTTACGAGGCCTCGTCCTTGAATCCGCCATTGTATCAAACGAAATTGATTTCTTTGAATTTAGTGGGATTTTCTGATTTATATTCAGATTTCTTACTATTAGTAATATTTTGATCGCTAGAATTTTTAGAATTTTTTAAGTCAAAAAATCCATGCTTGATTGTGACAATTGCCCGAGCGAGGAGAACATTTGTATTAGAGCAACGACATTCAAATTCTCAGGTGTCAGTGTTTTTTTTAAATCAGACAGTAATTCAATAAAAAAAAACAGGAACAACGGCTAAGATCAATGGAGTCAAAGTGGCACTTCAAATAGAGAGAGCACTTCTATTTTTCGTGAGGTCCCTAGGGGGGCACTTCAATTTCAGGGGCCCTTCTAATACAGGTTTTACGGTAATTTGAAATTTTAAGACTAAAAATGAAGAGACTTGAAGTTATGCAGAACAGAATTCTGAAAAAA</canonical>
            <polymorphic>CCAACCTTTCTGCGTCTCCATCATCTACTTTCTCTCCCCTGATTTCCTATTATATTTACTTCGTTCTCATATTTATTTCAAATTTTCCCCCTAACCTAACTTATTGCTCATCCTTATTATTACAGGTAGACTTCACCACGAAGTAGTTCCCGAACCATCATGTGGTTCGAGGAGAGTAGTTGGTCGAACCTCCGACTCACGGATATCCAGGAGGAATGGAGAGATCTGTGGCCGTCAAAAATCGAATTTATCACCTCAGCGATGGCATATCTATTTGCAATGACTAACTTTTTGAATTTGCCAAAATTGACACTCGAAAATGGAGGAGGTGAGTGATAAAGGCTTCAAGAAGGGGGTCCCTAGGGGGGAAACTTCAATTAGAGGGGGCAATTGTACTTTTCGTGGGTCCTCTGTGAACGGATCTCCCTATTGAGCATTTTTCAGTGAAATTTCGTTTTTCTACTAAAAATCCATTACGATTTCTACATAAAAAAAAGCGRAAACTGGCACCTGAAAATTTCGCGGACGCCGTTTGTGTCGATTTACGAGGCCTCGTCCTTGAATCCGCCATTGTATCAAACGAAATTGATTTCTTTGAATTTAGTGGGATTTTCTGATTTATATTCAGATTTCTTACTATTAGTAATATTTTGATCGCTAGAATTTTTAGAATTTTTTAAGTCAAAAAATCCATGCTTGATTGTGACAATTGCCCGAGCGAGGAGAACATTTGTATTAGAGCAACGACATTCAAATTCTCAGGTGTCAGTGTTTTTTTTAAATCAGACAGTAATTCAATAAAAAAAAACAGGAACAACGGCTAAGATCAATGGAGTCAAAGTGGCACTTCAAATAGAGAGAGCACTTCTATTTTTCGTGAGGTCCCTAGGGGGGCACTTCAATTTCAGGGGCCCTTCTAATACAGGTTTTACGGTAATTTGAAATTTTAAGACTAAAAATGAAGAGACTTGAAGTTATGCAGAACAGAATTCTGAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGTGAAATTTCGTTTTTCTAC</pcr_primer_p1>
		<pcr_primer_p2>CTAGGGACCTCACGAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>449</pcr_amplicon_size>
		<canonical_amplicon>TCAGTGAAATTTCGTTTTTCTACTAAAAATCCATTACGATTTCTACATAAAAAAAAGCGAAAACTGGCACCTGAAAATTTCGCGGACGCCGTTTGTGTCGATTTACGAGGCCTCGTCCTTGAATCCGCCATTGTATCAAACGAAATTGATTTCTTTGAATTTAGTGGGATTTTCTGATTTATATTCAGATTTCTTACTATTAGTAATATTTTGATCGCTAGAATTTTTAGAATTTTTTAAGTCAAAAAATCCATGCTTGATTGTGACAATTGCCCGAGCGAGGAGAACATTTGTATTAGAGCAACGACATTCAAATTCTCAGGTGTCAGTGTTTTTTTTAAATCAGACAGTAATTCAATAAAAAAAAACAGGAACAACGGCTAAGATCAATGGAGTCAAAGTGGCACTTCAAATAGAGAGAGCACTTCTATTTTTCGTGAGGTCCCTAG</canonical_amplicon>
		<polymorphic_amplicon>TCAGTGAAATTTCGTTTTTCTACTAAAAATCCATTACGATTTCTACATAAAAAAAAGCGRAAACTGGCACCTGAAAATTTCGCGGACGCCGTTTGTGTCGATTTACGAGGCCTCGTCCTTGAATCCGCCATTGTATCAAACGAAATTGATTTCTTTGAATTTAGTGGGATTTTCTGATTTATATTCAGATTTCTTACTATTAGTAATATTTTGATCGCTAGAATTTTTAGAATTTTTTAAGTCAAAAAATCCATGCTTGATTGTGACAATTGCCCGAGCGAGGAGAACATTTGTATTAGAGCAACGACATTCAAATTCTCAGGTGTCAGTGTTTTTTTTAAATCAGACAGTAATTCAATAAAAAAAAACAGGAACAACGGCTAAGATCAATGGAGTCAAAGTGGCACTTCAAATAGAGAGAGCACTTCTATTTTTCGTGAGGTCCCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38063</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>221959</contig_pos>
        <strand></strand>
        <context>ctcgtccttg[A/G]atccgccatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAAATTTCGCGGACGCCGTTTGTGTCGATTTACGAGGCCTCGTCCTTG</left_flank>
        <right_flank>ATCCGCCATTGTATCAAACGAAATTGATTTCTTTGAATTTAGTGGGATTT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCTCATATTTATTTCAAATTTTCCCCCTAACCTAACTTATTGCTCATCCTTATTATTACAGGTAGACTTCACCACGAAGTAGTTCCCGAACCATCATGTGGTTCGAGGAGAGTAGTTGGTCGAACCTCCGACTCACGGATATCCAGGAGGAATGGAGAGATCTGTGGCCGTCAAAAATCGAATTTATCACCTCAGCGATGGCATATCTATTTGCAATGACTAACTTTTTGAATTTGCCAAAATTGACACTCGAAAATGGAGGAGGTGAGTGATAAAGGCTTCAAGAAGGGGGTCCCTAGGGGGGAAACTTCAATTAGAGGGGGCAATTGTACTTTTCGTGGGTCCTCTGTGAACGGATCTCCCTATTGAGCATTTTTCAGTGAAATTTCGTTTTTCTACTAAAAATCCATTACGATTTCTACATAAAAAAAAGCGAAAACTGGCACCTGAAAATTTCGCGGACGCCGTTTGTGTCGATTTACGAGGCCTCGTCCTTGAATCCGCCATTGTATCAAACGAAATTGATTTCTTTGAATTTAGTGGGATTTTCTGATTTATATTCAGATTTCTTACTATTAGTAATATTTTGATCGCTAGAATTTTTAGAATTTTTTAAGTCAAAAAATCCATGCTTGATTGTGACAATTGCCCGAGCGAGGAGAACATTTGTATTAGAGCAACGACATTCAAATTCTCAGGTGTCAGTGTTTTTTTTAAATCAGACAGTAATTCAATAAAAAAAAACAGGAACAACGGCTAAGATCAATGGAGTCAAAGTGGCACTTCAAATAGAGAGAGCACTTCTATTTTTCGTGAGGTCCCTAGGGGGGCACTTCAATTTCAGGGGCCCTTCTAATACAGGTTTTACGGTAATTTGAAATTTTAAGACTAAAAATGAAGAGACTTGAAGTTATGCAGAACAGAATTCTGAAAAAAAACATAGATTTACGAGTTTCAGCACCTGGTGAGGAATATAGCTTTGTAGTCCGAGTTTTTAG</canonical>
            <polymorphic>GTTCTCATATTTATTTCAAATTTTCCCCCTAACCTAACTTATTGCTCATCCTTATTATTACAGGTAGACTTCACCACGAAGTAGTTCCCGAACCATCATGTGGTTCGAGGAGAGTAGTTGGTCGAACCTCCGACTCACGGATATCCAGGAGGAATGGAGAGATCTGTGGCCGTCAAAAATCGAATTTATCACCTCAGCGATGGCATATCTATTTGCAATGACTAACTTTTTGAATTTGCCAAAATTGACACTCGAAAATGGAGGAGGTGAGTGATAAAGGCTTCAAGAAGGGGGTCCCTAGGGGGGAAACTTCAATTAGAGGGGGCAATTGTACTTTTCGTGGGTCCTCTGTGAACGGATCTCCCTATTGAGCATTTTTCAGTGAAATTTCGTTTTTCTACTAAAAATCCATTACGATTTCTACATAAAAAAAAGCGAAAACTGGCACCTGAAAATTTCGCGGACGCCGTTTGTGTCGATTTACGAGGCCTCGTCCTTGRATCCGCCATTGTATCAAACGAAATTGATTTCTTTGAATTTAGTGGGATTTTCTGATTTATATTCAGATTTCTTACTATTAGTAATATTTTGATCGCTAGAATTTTTAGAATTTTTTAAGTCAAAAAATCCATGCTTGATTGTGACAATTGCCCGAGCGAGGAGAACATTTGTATTAGAGCAACGACATTCAAATTCTCAGGTGTCAGTGTTTTTTTTAAATCAGACAGTAATTCAATAAAAAAAAACAGGAACAACGGCTAAGATCAATGGAGTCAAAGTGGCACTTCAAATAGAGAGAGCACTTCTATTTTTCGTGAGGTCCCTAGGGGGGCACTTCAATTTCAGGGGCCCTTCTAATACAGGTTTTACGGTAATTTGAAATTTTAAGACTAAAAATGAAGAGACTTGAAGTTATGCAGAACAGAATTCTGAAAAAAAACATAGATTTACGAGTTTCAGCACCTGGTGAGGAATATAGCTTTGTAGTCCGAGTTTTTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>367 272 229 132</canonical_bands>
                <polymorphic_bands>639 229 132</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCCATTACGATTTCTACA</pcr_primer_p1>
		<pcr_primer_p2>CTAGGGACCTCACGAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCCATTACGATTTCTACATAAAAAAAAGCGAAAACTGGCACCTGAAAATTTCGCGGACGCCGTTTGTGTCGATTTACGAGGCCTCGTCCTTGAATCCGCCATTGTATCAAACGAAATTGATTTCTTTGAATTTAGTGGGATTTTCTGATTTATATTCAGATTTCTTACTATTAGTAATATTTTGATCGCTAGAATTTTTAGAATTTTTTAAGTCAAAAAATCCATGCTTGATTGTGACAATTGCCCGAGCGAGGAGAACATTTGTATTAGAGCAACGACATTCAAATTCTCAGGTGTCAGTGTTTTTTTTAAATCAGACAGTAATTCAATAAAAAAAAACAGGAACAACGGCTAAGATCAATGGAGTCAAAGTGGCACTTCAAATAGAGAGAGCACTTCTATTTTTCGTGAGGTCCCTAG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCCATTACGATTTCTACATAAAAAAAAGCGAAAACTGGCACCTGAAAATTTCGCGGACGCCGTTTGTGTCGATTTACGAGGCCTCGTCCTTGRATCCGCCATTGTATCAAACGAAATTGATTTCTTTGAATTTAGTGGGATTTTCTGATTTATATTCAGATTTCTTACTATTAGTAATATTTTGATCGCTAGAATTTTTAGAATTTTTTAAGTCAAAAAATCCATGCTTGATTGTGACAATTGCCCGAGCGAGGAGAACATTTGTATTAGAGCAACGACATTCAAATTCTCAGGTGTCAGTGTTTTTTTTAAATCAGACAGTAATTCAATAAAAAAAAACAGGAACAACGGCTAAGATCAATGGAGTCAAAGTGGCACTTCAAATAGAGAGAGCACTTCTATTTTTCGTGAGGTCCCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38064</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>223201</contig_pos>
        <strand></strand>
        <context>aaacacttct[A/G]atattatgat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGATTCCTATGAGAGCAATCAAAAATTTGTCAACTGACAAAACACTTCT</left_flank>
        <right_flank>ATATTATGATAAACACGTTATCAATTGACAACTTTTTGATATATTTAACA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTAATGGGCGAGGAAAAAGAAGAAGAGAAAATGTGGAAGAGAGACTTTGAAAAAATGATTTCGGGGGTTCTAGGTTCATGTGTAAATTCTGCCCTAAATAATCCCTATTTTCAGGTATCGGCGTCGCTCAAATCCTGTTCACCCTTGTCGTGCTGGCATGCATGACGAAGTTTCTCTCAACGCTTTGCCTATTTCTCTATTACTACTTCTGGACATATCATGCCGGCCGAAACGGTCTCCCATGGCTCAATTGCAAGGCATTCCCAGAATTTGTGTCCCAACCATGCAGAGAAGCAGGATCAATCACGAATATCACACAGATCATTAATCGATTGAACACGATTCAAGCAGAGAGCTCGATGATGCAGTTCTTGACGTAAGAGTTTCTACCGTAAATGCTCTCAATAGAAGTCCACCGTGTACATGCACGTTGAGCACAATAGTCTTGATTCCTATGAGAGCAATCAAAAATTTGTCAACTGACAAAACACTTCTAATATTATGATAAACACGTTATCAATTGACAACTTTTTGATATATTTAACAAGAGCTGAGAAACATAGGACAGTCAAAAATTAGAGGGCCCTTCTAATACAGGTTTTACGGTAATTGAAGACTAACAAATTGAGCTTCAACGTTTCAGAACTCTCGAGCGACCAAGCGAATCAATCGCTGACTTCAAGGACTTCCAATACAGCGTTTTGATAGCTCAGGGAGCAGTTTGGATTGGAGTATTTTTTGCCGTTTGTTTCGGAGTTCGATTCGTCGGAAAAACGGTCTCATTCGTTATGTCTCTTGGATTCGCCTCTCTCATGGCCTTCTTCATCAGAGCTGCAACACTCGGAGGCGTTCAGGAGATTCTTGAGATTTACTGGAAGGCCACTGATTGGAATAAGCTCGCTGACTATCAAGTATGGAGATTGGCTATTGAGCAGGCGATTCTTGGAACTGGAATTGGTTATGGAGCATTTATTACGATGAGCAGTTATATGAAGA</canonical>
            <polymorphic>AAATTTAATGGGCGAGGAAAAAGAAGAAGAGAAAATGTGGAAGAGAGACTTTGAAAAAATGATTTCGGGGGTTCTAGGTTCATGTGTAAATTCTGCCCTAAATAATCCCTATTTTCAGGTATCGGCGTCGCTCAAATCCTGTTCACCCTTGTCGTGCTGGCATGCATGACGAAGTTTCTCTCAACGCTTTGCCTATTTCTCTATTACTACTTCTGGACATATCATGCCGGCCGAAACGGTCTCCCATGGCTCAATTGCAAGGCATTCCCAGAATTTGTGTCCCAACCATGCAGAGAAGCAGGATCAATCACGAATATCACACAGATCATTAATCGATTGAACACGATTCAAGCAGAGAGCTCGATGATGCAGTTCTTGACGTAAGAGTTTCTACCGTAAATGCTCTCAATAGAAGTCCACCGTGTACATGCACGTTGAGCACAATAGTCTTGATTCCTATGAGAGCAATCAAAAATTTGTCAACTGACAAAACACTTCTRATATTATGATAAACACGTTATCAATTGACAACTTTTTGATATATTTAACAAGAGCTGAGAAACATAGGACAGTCAAAAATTAGAGGGCCCTTCTAATACAGGTTTTACGGTAATTGAAGACTAACAAATTGAGCTTCAACGTTTCAGAACTCTCGAGCGACCAAGCGAATCAATCGCTGACTTCAAGGACTTCCAATACAGCGTTTTGATAGCTCAGGGAGCAGTTTGGATTGGAGTATTTTTTGCCGTTTGTTTCGGAGTTCGATTCGTCGGAAAAACGGTCTCATTCGTTATGTCTCTTGGATTCGCCTCTCTCATGGCCTTCTTCATCAGAGCTGCAACACTCGGAGGCGTTCAGGAGATTCTTGAGATTTACTGGAAGGCCACTGATTGGAATAAGCTCGCTGACTATCAAGTATGGAGATTGGCTATTGAGCAGGCGATTCTTGGAACTGGAATTGGTTATGGAGCATTTATTACGATGAGCAGTTATATGAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTTCTTGACGTAAGAGTTTCT</pcr_primer_p1>
		<pcr_primer_p2>GTTGAAGCTCAATTTGTTAGTCT</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>CAGTTCTTGACGTAAGAGTTTCTACCGTAAATGCTCTCAATAGAAGTCCACCGTGTACATGCACGTTGAGCACAATAGTCTTGATTCCTATGAGAGCAATCAAAAATTTGTCAACTGACAAAACACTTCTAATATTATGATAAACACGTTATCAATTGACAACTTTTTGATATATTTAACAAGAGCTGAGAAACATAGGACAGTCAAAAATTAGAGGGCCCTTCTAATACAGGTTTTACGGTAATTGAAGACTAACAAATTGAGCTTCAAC</canonical_amplicon>
		<polymorphic_amplicon>CAGTTCTTGACGTAAGAGTTTCTACCGTAAATGCTCTCAATAGAAGTCCACCGTGTACATGCACGTTGAGCACAATAGTCTTGATTCCTATGAGAGCAATCAAAAATTTGTCAACTGACAAAACACTTCTRATATTATGATAAACACGTTATCAATTGACAACTTTTTGATATATTTAACAAGAGCTGAGAAACATAGGACAGTCAAAAATTAGAGGGCCCTTCTAATACAGGTTTTACGGTAATTGAAGACTAACAAATTGAGCTTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38065</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>243488</contig_pos>
        <strand>+</strand>
        <context>TTATCCTAGC[C/T]GAAAACTGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTGAAAGAGTGAGTTTAAAAAGAAAAGAGGGAAAGCTATTATCCTAGC</left_flank>
        <right_flank>GAAAACTGAAATGGTTCCAAATCTAAAATTCTGCCGAAAACAGACGAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACAACTCACATTCCACCACTCATTCCAAAGAAAGATACAATGGAAGAGGTAGATCTTTCGGAAAGAAACGATCCAGTGTTCTCTCTTGGTAACGCTCCACTATGCAATAGTTTGTCGTTGAGACTTCAAGAGAGGGTAATTTAAAAAACAAAATGATATATTCTGAATTAGTCTTTGAATATCACAATTTTCAGATTCACATCCCTAAAAAGTATGAAAATCACGGAAGCGAAATGTCAGTTGTCAACAAGCCAGCATCTCAAGTACGAAGAGATGTTCATAACACAAAATTGAAAGCTGTCGTTGTCAAGAAATCGATTGTAGTACCGAGAAAGAAGAATCCAGCTCATGTCGTCGGTGCTCTTGATACAGATCTTGATGGACGACCGTTCCCAACGACCTGCGAGATTTTTTTCCCATATGCCAAACATGAAACCTACAACATGTTATTGAAAGAGTGAGTTTAAAAAGAAAAGAGGGAAAGCTATTATCCTAGCCGAAAACTGAAATGGTTCCAAATCTAAAATTCTGCCGAAAACAGACGAAAAACGGACGGACATCAACGAGTAATTTCTTGTTATCATCTGCCAGAAAAAAAATGAAAGTTAAAAACATGTGATAACTACGGTAGTTCGGATGTGGCAGCGGTCACCAGATGTTCCACTTCTCCGATTATTGCATACCAGCATAATAATTCAACTTTTTTTTCAGTTATATTGTATCAATCGGATGGCGTGGTGGATCGTATTCGTCGGAACAAAAATCCCGCCTATTGTCTGGATTCATCGAGCAAAATTATGAAATGATCTTCGAGCACGGCCTGGAAAATGTGTATCTGAAACATCTTCAAGTGGTGGGTATGCATTCATTCAACTGGAAACAAATTCACTACACTGCACCACGCGACAAGTATCTCGATCTTAAGAAGAAGTGGACTGAGCAACATTGTCCATCCACATCTAGAAAAAATTAATCATATTTTCATTGTTATAATCAGT</canonical>
            <polymorphic>ACACAACTCACATTCCACCACTCATTCCAAAGAAAGATACAATGGAAGAGGTAGATCTTTCGGAAAGAAACGATCCAGTGTTCTCTCTTGGTAACGCTCCACTATGCAATAGTTTGTCGTTGAGACTTCAAGAGAGGGTAATTTAAAAAACAAAATGATATATTCTGAATTAGTCTTTGAATATCACAATTTTCAGATTCACATCCCTAAAAAGTATGAAAATCACGGAAGCGAAATGTCAGTTGTCAACAAGCCAGCATCTCAAGTACGAAGAGATGTTCATAACACAAAATTGAAAGCTGTCGTTGTCAAGAAATCGATTGTAGTACCGAGAAAGAAGAATCCAGCTCATGTCGTCGGTGCTCTTGATACAGATCTTGATGGACGACCGTTCCCAACGACCTGCGAGATTTTTTTCCCATATGCCAAACATGAAACCTACAACATGTTATTGAAAGAGTGAGTTTAAAAAGAAAAGAGGGAAAGCTATTATCCTAGCYGAAAACTGAAATGGTTCCAAATCTAAAATTCTGCCGAAAACAGACGAAAAACGGACGGACATCAACGAGTAATTTCTTGTTATCATCTGCCAGAAAAAAAATGAAAGTTAAAAACATGTGATAACTACGGTAGTTCGGATGTGGCAGCGGTCACCAGATGTTCCACTTCTCCGATTATTGCATACCAGCATAATAATTCAACTTTTTTTTCAGTTATATTGTATCAATCGGATGGCGTGGTGGATCGTATTCGTCGGAACAAAAATCCCGCCTATTGTCTGGATTCATCGAGCAAAATTATGAAATGATCTTCGAGCACGGCCTGGAAAATGTGTATCTGAAACATCTTCAAGTGGTGGGTATGCATTCATTCAACTGGAAACAAATTCACTACACTGCACCACGCGACAAGTATCTCGATCTTAAGAAGAAGTGGACTGAGCAACATTGTCCATCCACATCTAGAAAAAATTAATCATATTTTCATTGTTATAATCAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>323 253 179 139 48 46 12</canonical_bands>
                <polymorphic_bands>335 253 179 139 48 46</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACATGTTATTGAAAGAGTGAGT</pcr_primer_p1>
		<pcr_primer_p2>CCGATTGATACAATATAACTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>290</pcr_amplicon_size>
		<canonical_amplicon>CAACATGTTATTGAAAGAGTGAGTTTAAAAAGAAAAGAGGGAAAGCTATTATCCTAGCCGAAAACTGAAATGGTTCCAAATCTAAAATTCTGCCGAAAACAGACGAAAAACGGACGGACATCAACGAGTAATTTCTTGTTATCATCTGCCAGAAAAAAAATGAAAGTTAAAAACATGTGATAACTACGGTAGTTCGGATGTGGCAGCGGTCACCAGATGTTCCACTTCTCCGATTATTGCATACCAGCATAATAATTCAACTTTTTTTTCAGTTATATTGTATCAATCGG</canonical_amplicon>
		<polymorphic_amplicon>CAACATGTTATTGAAAGAGTGAGTTTAAAAAGAAAAGAGGGAAAGCTATTATCCTAGCYGAAAACTGAAATGGTTCCAAATCTAAAATTCTGCCGAAAACAGACGAAAAACGGACGGACATCAACGAGTAATTTCTTGTTATCATCTGCCAGAAAAAAAATGAAAGTTAAAAACATGTGATAACTACGGTAGTTCGGATGTGGCAGCGGTCACCAGATGTTCCACTTCTCCGATTATTGCATACCAGCATAATAATTCAACTTTTTTTTCAGTTATATTGTATCAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38066</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>243525</contig_pos>
        <strand>+</strand>
        <context>AATTCTGCCG[A/G]AAACAGACGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTATTATCCTAGCCGAAAACTGAAATGGTTCCAAATCTAAAATTCTGCCG</left_flank>
        <right_flank>AAACAGACGAAAAACGGACGGACATCAACGAGTAATTTCTTGTTATCATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACAATGGAAGAGGTAGATCTTTCGGAAAGAAACGATCCAGTGTTCTCTCTTGGTAACGCTCCACTATGCAATAGTTTGTCGTTGAGACTTCAAGAGAGGGTAATTTAAAAAACAAAATGATATATTCTGAATTAGTCTTTGAATATCACAATTTTCAGATTCACATCCCTAAAAAGTATGAAAATCACGGAAGCGAAATGTCAGTTGTCAACAAGCCAGCATCTCAAGTACGAAGAGATGTTCATAACACAAAATTGAAAGCTGTCGTTGTCAAGAAATCGATTGTAGTACCGAGAAAGAAGAATCCAGCTCATGTCGTCGGTGCTCTTGATACAGATCTTGATGGACGACCGTTCCCAACGACCTGCGAGATTTTTTTCCCATATGCCAAACATGAAACCTACAACATGTTATTGAAAGAGTGAGTTTAAAAAGAAAAGAGGGAAAGCTATTATCCTAGCCGAAAACTGAAATGGTTCCAAATCTAAAATTCTGCCGAAAACAGACGAAAAACGGACGGACATCAACGAGTAATTTCTTGTTATCATCTGCCAGAAAAAAAATGAAAGTTAAAAACATGTGATAACTACGGTAGTTCGGATGTGGCAGCGGTCACCAGATGTTCCACTTCTCCGATTATTGCATACCAGCATAATAATTCAACTTTTTTTTCAGTTATATTGTATCAATCGGATGGCGTGGTGGATCGTATTCGTCGGAACAAAAATCCCGCCTATTGTCTGGATTCATCGAGCAAAATTATGAAATGATCTTCGAGCACGGCCTGGAAAATGTGTATCTGAAACATCTTCAAGTGGTGGGTATGCATTCATTCAACTGGAAACAAATTCACTACACTGCACCACGCGACAAGTATCTCGATCTTAAGAAGAAGTGGACTGAGCAACATTGTCCATCCACATCTAGAAAAAATTAATCATATTTTCATTGTTATAATCAGTTTCATGTTTTTTCTCTTTTATCTGTTTACCCATTTAC</canonical>
            <polymorphic>TACAATGGAAGAGGTAGATCTTTCGGAAAGAAACGATCCAGTGTTCTCTCTTGGTAACGCTCCACTATGCAATAGTTTGTCGTTGAGACTTCAAGAGAGGGTAATTTAAAAAACAAAATGATATATTCTGAATTAGTCTTTGAATATCACAATTTTCAGATTCACATCCCTAAAAAGTATGAAAATCACGGAAGCGAAATGTCAGTTGTCAACAAGCCAGCATCTCAAGTACGAAGAGATGTTCATAACACAAAATTGAAAGCTGTCGTTGTCAAGAAATCGATTGTAGTACCGAGAAAGAAGAATCCAGCTCATGTCGTCGGTGCTCTTGATACAGATCTTGATGGACGACCGTTCCCAACGACCTGCGAGATTTTTTTCCCATATGCCAAACATGAAACCTACAACATGTTATTGAAAGAGTGAGTTTAAAAAGAAAAGAGGGAAAGCTATTATCCTAGCCGAAAACTGAAATGGTTCCAAATCTAAAATTCTGCCGRAAACAGACGAAAAACGGACGGACATCAACGAGTAATTTCTTGTTATCATCTGCCAGAAAAAAAATGAAAGTTAAAAACATGTGATAACTACGGTAGTTCGGATGTGGCAGCGGTCACCAGATGTTCCACTTCTCCGATTATTGCATACCAGCATAATAATTCAACTTTTTTTTCAGTTATATTGTATCAATCGGATGGCGTGGTGGATCGTATTCGTCGGAACAAAAATCCCGCCTATTGTCTGGATTCATCGAGCAAAATTATGAAATGATCTTCGAGCACGGCCTGGAAAATGTGTATCTGAAACATCTTCAAGTGGTGGGTATGCATTCATTCAACTGGAAACAAATTCACTACACTGCACCACGCGACAAGTATCTCGATCTTAAGAAGAAGTGGACTGAGCAACATTGTCCATCCACATCTAGAAAAAATTAATCATATTTTCATTGTTATAATCAGTTTCATGTTTTTTCTCTTTTATCTGTTTACCCATTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGAGGGAAAGCTATTATCCTA</pcr_primer_p1>
		<pcr_primer_p2>CCGATTGATACAATATAACTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>AAAGAGGGAAAGCTATTATCCTAGCCGAAAACTGAAATGGTTCCAAATCTAAAATTCTGCCGAAAACAGACGAAAAACGGACGGACATCAACGAGTAATTTCTTGTTATCATCTGCCAGAAAAAAAATGAAAGTTAAAAACATGTGATAACTACGGTAGTTCGGATGTGGCAGCGGTCACCAGATGTTCCACTTCTCCGATTATTGCATACCAGCATAATAATTCAACTTTTTTTTCAGTTATATTGTATCAATCGG</canonical_amplicon>
		<polymorphic_amplicon>AAAGAGGGAAAGCTATTATCCTAGCCGAAAACTGAAATGGTTCCAAATCTAAAATTCTGCCGRAAACAGACGAAAAACGGACGGACATCAACGAGTAATTTCTTGTTATCATCTGCCAGAAAAAAAATGAAAGTTAAAAACATGTGATAACTACGGTAGTTCGGATGTGGCAGCGGTCACCAGATGTTCCACTTCTCCGATTATTGCATACCAGCATAATAATTCAACTTTTTTTTCAGTTATATTGTATCAATCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38067</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>243549</contig_pos>
        <strand>+</strand>
        <context>ACGGACGGAC[A/G]TCAACGAGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGGTTCCAAATCTAAAATTCTGCCGAAAACAGACGAAAAACGGACGGAC</left_flank>
        <right_flank>TCAACGAGTAATTTCTTGTTATCATCTGCCAGAAAAAAAATGAAAGTTAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAAGAAACGATCCAGTGTTCTCTCTTGGTAACGCTCCACTATGCAATAGTTTGTCGTTGAGACTTCAAGAGAGGGTAATTTAAAAAACAAAATGATATATTCTGAATTAGTCTTTGAATATCACAATTTTCAGATTCACATCCCTAAAAAGTATGAAAATCACGGAAGCGAAATGTCAGTTGTCAACAAGCCAGCATCTCAAGTACGAAGAGATGTTCATAACACAAAATTGAAAGCTGTCGTTGTCAAGAAATCGATTGTAGTACCGAGAAAGAAGAATCCAGCTCATGTCGTCGGTGCTCTTGATACAGATCTTGATGGACGACCGTTCCCAACGACCTGCGAGATTTTTTTCCCATATGCCAAACATGAAACCTACAACATGTTATTGAAAGAGTGAGTTTAAAAAGAAAAGAGGGAAAGCTATTATCCTAGCCGAAAACTGAAATGGTTCCAAATCTAAAATTCTGCCGAAAACAGACGAAAAACGGACGGACATCAACGAGTAATTTCTTGTTATCATCTGCCAGAAAAAAAATGAAAGTTAAAAACATGTGATAACTACGGTAGTTCGGATGTGGCAGCGGTCACCAGATGTTCCACTTCTCCGATTATTGCATACCAGCATAATAATTCAACTTTTTTTTCAGTTATATTGTATCAATCGGATGGCGTGGTGGATCGTATTCGTCGGAACAAAAATCCCGCCTATTGTCTGGATTCATCGAGCAAAATTATGAAATGATCTTCGAGCACGGCCTGGAAAATGTGTATCTGAAACATCTTCAAGTGGTGGGTATGCATTCATTCAACTGGAAACAAATTCACTACACTGCACCACGCGACAAGTATCTCGATCTTAAGAAGAAGTGGACTGAGCAACATTGTCCATCCACATCTAGAAAAAATTAATCATATTTTCATTGTTATAATCAGTTTCATGTTTTTTCTCTTTTATCTGTTTACCCATTTACTAAACAATCGTCTCATATTGAATA</canonical>
            <polymorphic>GGAAAGAAACGATCCAGTGTTCTCTCTTGGTAACGCTCCACTATGCAATAGTTTGTCGTTGAGACTTCAAGAGAGGGTAATTTAAAAAACAAAATGATATATTCTGAATTAGTCTTTGAATATCACAATTTTCAGATTCACATCCCTAAAAAGTATGAAAATCACGGAAGCGAAATGTCAGTTGTCAACAAGCCAGCATCTCAAGTACGAAGAGATGTTCATAACACAAAATTGAAAGCTGTCGTTGTCAAGAAATCGATTGTAGTACCGAGAAAGAAGAATCCAGCTCATGTCGTCGGTGCTCTTGATACAGATCTTGATGGACGACCGTTCCCAACGACCTGCGAGATTTTTTTCCCATATGCCAAACATGAAACCTACAACATGTTATTGAAAGAGTGAGTTTAAAAAGAAAAGAGGGAAAGCTATTATCCTAGCCGAAAACTGAAATGGTTCCAAATCTAAAATTCTGCCGAAAACAGACGAAAAACGGACGGACRTCAACGAGTAATTTCTTGTTATCATCTGCCAGAAAAAAAATGAAAGTTAAAAACATGTGATAACTACGGTAGTTCGGATGTGGCAGCGGTCACCAGATGTTCCACTTCTCCGATTATTGCATACCAGCATAATAATTCAACTTTTTTTTCAGTTATATTGTATCAATCGGATGGCGTGGTGGATCGTATTCGTCGGAACAAAAATCCCGCCTATTGTCTGGATTCATCGAGCAAAATTATGAAATGATCTTCGAGCACGGCCTGGAAAATGTGTATCTGAAACATCTTCAAGTGGTGGGTATGCATTCATTCAACTGGAAACAAATTCACTACACTGCACCACGCGACAAGTATCTCGATCTTAAGAAGAAGTGGACTGAGCAACATTGTCCATCCACATCTAGAAAAAATTAATCATATTTTCATTGTTATAATCAGTTTCATGTTTTTTCTCTTTTATCTGTTTACCCATTTACTAAACAATCGTCTCATATTGAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTGAAATGGTTCCAAATCTA</pcr_primer_p1>
		<pcr_primer_p2>CCATCCGATTGATACAATATAAC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>AACTGAAATGGTTCCAAATCTAAAATTCTGCCGAAAACAGACGAAAAACGGACGGACATCAACGAGTAATTTCTTGTTATCATCTGCCAGAAAAAAAATGAAAGTTAAAAACATGTGATAACTACGGTAGTTCGGATGTGGCAGCGGTCACCAGATGTTCCACTTCTCCGATTATTGCATACCAGCATAATAATTCAACTTTTTTTTCAGTTATATTGTATCAATCGGATGG</canonical_amplicon>
		<polymorphic_amplicon>AACTGAAATGGTTCCAAATCTAAAATTCTGCCGAAAACAGACGAAAAACGGACGGACRTCAACGAGTAATTTCTTGTTATCATCTGCCAGAAAAAAAATGAAAGTTAAAAACATGTGATAACTACGGTAGTTCGGATGTGGCAGCGGTCACCAGATGTTCCACTTCTCCGATTATTGCATACCAGCATAATAATTCAACTTTTTTTTCAGTTATATTGTATCAATCGGATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38068</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>243569</contig_pos>
        <strand>+</strand>
        <context>AATTTCTTGT[G/T]ATCATCTGCC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTGCCGAAAACAGACGAAAAACGGACGGACATCAACGAGTAATTTCTTGT</left_flank>
        <right_flank>ATCATCTGCCAGAAAAAAAATGAAAGTTAAAAACATGTGATAACTACGGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCTCTTGGTAACGCTCCACTATGCAATAGTTTGTCGTTGAGACTTCAAGAGAGGGTAATTTAAAAAACAAAATGATATATTCTGAATTAGTCTTTGAATATCACAATTTTCAGATTCACATCCCTAAAAAGTATGAAAATCACGGAAGCGAAATGTCAGTTGTCAACAAGCCAGCATCTCAAGTACGAAGAGATGTTCATAACACAAAATTGAAAGCTGTCGTTGTCAAGAAATCGATTGTAGTACCGAGAAAGAAGAATCCAGCTCATGTCGTCGGTGCTCTTGATACAGATCTTGATGGACGACCGTTCCCAACGACCTGCGAGATTTTTTTCCCATATGCCAAACATGAAACCTACAACATGTTATTGAAAGAGTGAGTTTAAAAAGAAAAGAGGGAAAGCTATTATCCTAGCCGAAAACTGAAATGGTTCCAAATCTAAAATTCTGCCGAAAACAGACGAAAAACGGACGGACATCAACGAGTAATTTCTTGTTATCATCTGCCAGAAAAAAAATGAAAGTTAAAAACATGTGATAACTACGGTAGTTCGGATGTGGCAGCGGTCACCAGATGTTCCACTTCTCCGATTATTGCATACCAGCATAATAATTCAACTTTTTTTTCAGTTATATTGTATCAATCGGATGGCGTGGTGGATCGTATTCGTCGGAACAAAAATCCCGCCTATTGTCTGGATTCATCGAGCAAAATTATGAAATGATCTTCGAGCACGGCCTGGAAAATGTGTATCTGAAACATCTTCAAGTGGTGGGTATGCATTCATTCAACTGGAAACAAATTCACTACACTGCACCACGCGACAAGTATCTCGATCTTAAGAAGAAGTGGACTGAGCAACATTGTCCATCCACATCTAGAAAAAATTAATCATATTTTCATTGTTATAATCAGTTTCATGTTTTTTCTCTTTTATCTGTTTACCCATTTACTAAACAATCGTCTCATATTGAATAGATTTATTAAGAATTACCCT</canonical>
            <polymorphic>TCTCTCTTGGTAACGCTCCACTATGCAATAGTTTGTCGTTGAGACTTCAAGAGAGGGTAATTTAAAAAACAAAATGATATATTCTGAATTAGTCTTTGAATATCACAATTTTCAGATTCACATCCCTAAAAAGTATGAAAATCACGGAAGCGAAATGTCAGTTGTCAACAAGCCAGCATCTCAAGTACGAAGAGATGTTCATAACACAAAATTGAAAGCTGTCGTTGTCAAGAAATCGATTGTAGTACCGAGAAAGAAGAATCCAGCTCATGTCGTCGGTGCTCTTGATACAGATCTTGATGGACGACCGTTCCCAACGACCTGCGAGATTTTTTTCCCATATGCCAAACATGAAACCTACAACATGTTATTGAAAGAGTGAGTTTAAAAAGAAAAGAGGGAAAGCTATTATCCTAGCCGAAAACTGAAATGGTTCCAAATCTAAAATTCTGCCGAAAACAGACGAAAAACGGACGGACATCAACGAGTAATTTCTTGTKATCATCTGCCAGAAAAAAAATGAAAGTTAAAAACATGTGATAACTACGGTAGTTCGGATGTGGCAGCGGTCACCAGATGTTCCACTTCTCCGATTATTGCATACCAGCATAATAATTCAACTTTTTTTTCAGTTATATTGTATCAATCGGATGGCGTGGTGGATCGTATTCGTCGGAACAAAAATCCCGCCTATTGTCTGGATTCATCGAGCAAAATTATGAAATGATCTTCGAGCACGGCCTGGAAAATGTGTATCTGAAACATCTTCAAGTGGTGGGTATGCATTCATTCAACTGGAAACAAATTCACTACACTGCACCACGCGACAAGTATCTCGATCTTAAGAAGAAGTGGACTGAGCAACATTGTCCATCCACATCTAGAAAAAATTAATCATATTTTCATTGTTATAATCAGTTTCATGTTTTTTCTCTTTTATCTGTTTACCCATTTACTAAACAATCGTCTCATATTGAATAGATTTATTAAGAATTACCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTGAAATGGTTCCAAATCTA</pcr_primer_p1>
		<pcr_primer_p2>CCATCCGATTGATACAATATAAC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>AACTGAAATGGTTCCAAATCTAAAATTCTGCCGAAAACAGACGAAAAACGGACGGACATCAACGAGTAATTTCTTGTTATCATCTGCCAGAAAAAAAATGAAAGTTAAAAACATGTGATAACTACGGTAGTTCGGATGTGGCAGCGGTCACCAGATGTTCCACTTCTCCGATTATTGCATACCAGCATAATAATTCAACTTTTTTTTCAGTTATATTGTATCAATCGGATGG</canonical_amplicon>
		<polymorphic_amplicon>AACTGAAATGGTTCCAAATCTAAAATTCTGCCGAAAACAGACGAAAAACGGACGGACATCAACGAGTAATTTCTTGTKATCATCTGCCAGAAAAAAAATGAAAGTTAAAAACATGTGATAACTACGGTAGTTCGGATGTGGCAGCGGTCACCAGATGTTCCACTTCTCCGATTATTGCATACCAGCATAATAATTCAACTTTTTTTTCAGTTATATTGTATCAATCGGATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38069</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>243802</contig_pos>
        <strand>+</strand>
        <context>AATGATCTTC[C/G]AGCACGGCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATCCCGCCTATTGTCTGGATTCATCGAGCAAAATTATGAAATGATCTTC</left_flank>
        <right_flank>AGCACGGCCTGGAAAATGTGTATCTGAAACATCTTCAAGTGGTGGGTATG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCGATTGTAGTACCGAGAAAGAAGAATCCAGCTCATGTCGTCGGTGCTCTTGATACAGATCTTGATGGACGACCGTTCCCAACGACCTGCGAGATTTTTTTCCCATATGCCAAACATGAAACCTACAACATGTTATTGAAAGAGTGAGTTTAAAAAGAAAAGAGGGAAAGCTATTATCCTAGCCGAAAACTGAAATGGTTCCAAATCTAAAATTCTGCCGAAAACAGACGAAAAACGGACGGACATCAACGAGTAATTTCTTGTTATCATCTGCCAGAAAAAAAATGAAAGTTAAAAACATGTGATAACTACGGTAGTTCGGATGTGGCAGCGGTCACCAGATGTTCCACTTCTCCGATTATTGCATACCAGCATAATAATTCAACTTTTTTTTCAGTTATATTGTATCAATCGGATGGCGTGGTGGATCGTATTCGTCGGAACAAAAATCCCGCCTATTGTCTGGATTCATCGAGCAAAATTATGAAATGATCTTCGAGCACGGCCTGGAAAATGTGTATCTGAAACATCTTCAAGTGGTGGGTATGCATTCATTCAACTGGAAACAAATTCACTACACTGCACCACGCGACAAGTATCTCGATCTTAAGAAGAAGTGGACTGAGCAACATTGTCCATCCACATCTAGAAAAAATTAATCATATTTTCATTGTTATAATCAGTTTCATGTTTTTTCTCTTTTATCTGTTTACCCATTTACTAAACAATCGTCTCATATTGAATAGATTTATTAAGAATTACCCTGACACCCTTTCCCCTCTACGAATATTGAAGATCCTCCCAAATCTAACGAGTCATTTCTTGTCATTATCCTCTGTCCTATCCTGTCCCAATTCTTGAACAATTTTTATCGTTGAAATTGATTAATAAATAAAGTATTTATAGAGATTAACTGGAGAGTTGAATATCAGTTCGAATGTACAAAAACAGATTCCCCAACTACTTATTTTCCCTGTCTCCCCTTTGATCACAATATT</canonical>
            <polymorphic>AATCGATTGTAGTACCGAGAAAGAAGAATCCAGCTCATGTCGTCGGTGCTCTTGATACAGATCTTGATGGACGACCGTTCCCAACGACCTGCGAGATTTTTTTCCCATATGCCAAACATGAAACCTACAACATGTTATTGAAAGAGTGAGTTTAAAAAGAAAAGAGGGAAAGCTATTATCCTAGCCGAAAACTGAAATGGTTCCAAATCTAAAATTCTGCCGAAAACAGACGAAAAACGGACGGACATCAACGAGTAATTTCTTGTTATCATCTGCCAGAAAAAAAATGAAAGTTAAAAACATGTGATAACTACGGTAGTTCGGATGTGGCAGCGGTCACCAGATGTTCCACTTCTCCGATTATTGCATACCAGCATAATAATTCAACTTTTTTTTCAGTTATATTGTATCAATCGGATGGCGTGGTGGATCGTATTCGTCGGAACAAAAATCCCGCCTATTGTCTGGATTCATCGAGCAAAATTATGAAATGATCTTCSAGCACGGCCTGGAAAATGTGTATCTGAAACATCTTCAAGTGGTGGGTATGCATTCATTCAACTGGAAACAAATTCACTACACTGCACCACGCGACAAGTATCTCGATCTTAAGAAGAAGTGGACTGAGCAACATTGTCCATCCACATCTAGAAAAAATTAATCATATTTTCATTGTTATAATCAGTTTCATGTTTTTTCTCTTTTATCTGTTTACCCATTTACTAAACAATCGTCTCATATTGAATAGATTTATTAAGAATTACCCTGACACCCTTTCCCCTCTACGAATATTGAAGATCCTCCCAAATCTAACGAGTCATTTCTTGTCATTATCCTCTGTCCTATCCTGTCCCAATTCTTGAACAATTTTTATCGTTGAAATTGATTAATAAATAAAGTATTTATAGAGATTAACTGGAGAGTTGAATATCAGTTCGAATGTACAAAAACAGATTCCCCAACTACTTATTTTCCCTGTCTCCCCTTTGATCACAATATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>496 454 50</canonical_bands>
                <polymorphic_bands>950 50</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>496 454 50</canonical_bands>
                <polymorphic_bands>950 50</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>471 333 105 63 24 4</canonical_bands>
                <polymorphic_bands>471 333 129 63 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTCGTCGGAACAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>CATGAAACTGATTATAACAATGAAA</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>TATTCGTCGGAACAAAAATCCCGCCTATTGTCTGGATTCATCGAGCAAAATTATGAAATGATCTTCGAGCACGGCCTGGAAAATGTGTATCTGAAACATCTTCAAGTGGTGGGTATGCATTCATTCAACTGGAAACAAATTCACTACACTGCACCACGCGACAAGTATCTCGATCTTAAGAAGAAGTGGACTGAGCAACATTGTCCATCCACATCTAGAAAAAATTAATCATATTTTCATTGTTATAATCAGTTTCATG</canonical_amplicon>
		<polymorphic_amplicon>TATTCGTCGGAACAAAAATCCCGCCTATTGTCTGGATTCATCGAGCAAAATTATGAAATGATCTTCSAGCACGGCCTGGAAAATGTGTATCTGAAACATCTTCAAGTGGTGGGTATGCATTCATTCAACTGGAAACAAATTCACTACACTGCACCACGCGACAAGTATCTCGATCTTAAGAAGAAGTGGACTGAGCAACATTGTCCATCCACATCTAGAAAAAATTAATCATATTTTCATTGTTATAATCAGTTTCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38070</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>248215</contig_pos>
        <strand></strand>
        <context>tgaccatata[G/T]tttttcagct</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAACCCATTTTTTCTAGCGTAACTTTGCTGGTTTTGAATCTGACCATATA</left_flank>
        <right_flank>TTTTTCAGCTAATGTTAAAATTTTTCACGACGACAAATTTTCAGTGATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCGGTTTCTGAAACGTCGGGTTCTGAAATGTCAATTTCTGAAACGTTGTCTTTCTGAAACGTCGGGTTCTAAAACGTCCAGGAGCCAAGTTTTTCAAAATATCAAATTGAGAAACTAGAATTTGAGAAAATCAACAAAGGGAAAAATGAAATTTGAAAACTGAGCAAATTTCCAAAATTCGCATGTTTTTGAACGCTTGAAATCGATAGTTCTGAAACTTCTAGGAAGTTATGAAATTCAGTAAAATTCAAAAAGAAATTCAAATTAAAAAATTCGAAATTTTTGGAATTTGGATTTTCGAAAACTGAAATTTTTCAGAAGCTTCAGGTTTTTTAGAATTTTCAAAAAGTTACAAAAAAACCCCGTTCAAAAAAATACAGAAGTGTTCAAGACATGTTCTACGCACGAAGACAATTCTGAAACGCGCGAAGACAGATATTCAAACTCAAACCCATTTTTTCTAGCGTAACTTTGCTGGTTTTGAATCTGACCATATAGTTTTTCAGCTAATGTTAAAATTTTTCACGACGACAAATTTTCAGTGATTTTTGTCAAAATTGGAACGAAAATCAAACTTTTGGCCAAAGTTGGTCACCGTTTGGACCGTACTTGGTGGATCCGAGCCAAATTTACATTTTTTATCTTAAAAGTGTCCCAACAAAGTGTCCCAACTCTCATGATATATAATATCAATGCATAAAAACTAGTTTGAATTTTTCTGTACAACACTATTTTCGATTCTCACAGAGAATGCGTCTTAAATAATTTAATTTTTATATTCATCTTTTTCGTAAATGATATCTTGGTTCAACGGTACACCTTTTGACAATTTTTGGTAACCGGTTAGTCAGAGAGTTTTGCTATCGATCAAAAAAGAATCAGTCAACGCGGACTGAAATTAACCTAGTAAGGAGCTTTCAAAGAAAATTTTTACAAAATGTCGAAAATGGGGGTACAGAATATTGTATTCAAAGGAAGAGGGTGGTGGAAATTTCCAT</canonical>
            <polymorphic>TGTCGGTTTCTGAAACGTCGGGTTCTGAAATGTCAATTTCTGAAACGTTGTCTTTCTGAAACGTCGGGTTCTAAAACGTCCAGGAGCCAAGTTTTTCAAAATATCAAATTGAGAAACTAGAATTTGAGAAAATCAACAAAGGGAAAAATGAAATTTGAAAACTGAGCAAATTTCCAAAATTCGCATGTTTTTGAACGCTTGAAATCGATAGTTCTGAAACTTCTAGGAAGTTATGAAATTCAGTAAAATTCAAAAAGAAATTCAAATTAAAAAATTCGAAATTTTTGGAATTTGGATTTTCGAAAACTGAAATTTTTCAGAAGCTTCAGGTTTTTTAGAATTTTCAAAAAGTTACAAAAAAACCCCGTTCAAAAAAATACAGAAGTGTTCAAGACATGTTCTACGCACGAAGACAATTCTGAAACGCGCGAAGACAGATATTCAAACTCAAACCCATTTTTTCTAGCGTAACTTTGCTGGTTTTGAATCTGACCATATAKTTTTTCAGCTAATGTTAAAATTTTTCACGACGACAAATTTTCAGTGATTTTTGTCAAAATTGGAACGAAAATCAAACTTTTGGCCAAAGTTGGTCACCGTTTGGACCGTACTTGGTGGATCCGAGCCAAATTTACATTTTTTATCTTAAAAGTGTCCCAACAAAGTGTCCCAACTCTCATGATATATAATATCAATGCATAAAAACTAGTTTGAATTTTTCTGTACAACACTATTTTCGATTCTCACAGAGAATGCGTCTTAAATAATTTAATTTTTATATTCATCTTTTTCGTAAATGATATCTTGGTTCAACGGTACACCTTTTGACAATTTTTGGTAACCGGTTAGTCAGAGAGTTTTGCTATCGATCAAAAAAGAATCAGTCAACGCGGACTGAAATTAACCTAGTAAGGAGCTTTCAAAGAAAATTTTTACAAAATGTCGAAAATGGGGGTACAGAATATTGTATTCAAAGGAAGAGGGTGGTGGAAATTTCCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCTACGCACGAAGACAAT</pcr_primer_p1>
		<pcr_primer_p2>GATTTCTTTTCTTCTCTCCTATATTT</pcr_primer_p2>
		<pcr_amplicon_size>632</pcr_amplicon_size>
		<canonical_amplicon>GTTCTACGCACGAAGACAATTCTGAAACGCGCGAAGACAGATATTCAAACTCAAACCCATTTTTTCTAGCGTAACTTTGCTGGTTTTGAATCTGACCATATAGTTTTTCAGCTAATGTTAAAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>GTTCTACGCACGAAGACAATTCTGAAACGCGCGAAGACAGATATTCAAACTCAAACCCATTTTTTCTAGCGTAACTTTGCTGGTTTTGAATCTGACCATATAKTTTTTCAGCTAATGTTAAAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38071</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>248273</contig_pos>
        <strand></strand>
        <context>tttttgtcaa[A/G]attggaacga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTAATGTTAAAATTTTTCACGACGACAAATTTTCAGTGATTTTTGTCAA</left_flank>
        <right_flank>ATTGGAACGAAAATCAAACTTTTGGCCAAAGTTGGTCACCGTTTGGACCG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACGTCGGGTTCTAAAACGTCCAGGAGCCAAGTTTTTCAAAATATCAAATTGAGAAACTAGAATTTGAGAAAATCAACAAAGGGAAAAATGAAATTTGAAAACTGAGCAAATTTCCAAAATTCGCATGTTTTTGAACGCTTGAAATCGATAGTTCTGAAACTTCTAGGAAGTTATGAAATTCAGTAAAATTCAAAAAGAAATTCAAATTAAAAAATTCGAAATTTTTGGAATTTGGATTTTCGAAAACTGAAATTTTTCAGAAGCTTCAGGTTTTTTAGAATTTTCAAAAAGTTACAAAAAAACCCCGTTCAAAAAAATACAGAAGTGTTCAAGACATGTTCTACGCACGAAGACAATTCTGAAACGCGCGAAGACAGATATTCAAACTCAAACCCATTTTTTCTAGCGTAACTTTGCTGGTTTTGAATCTGACCATATAGTTTTTCAGCTAATGTTAAAATTTTTCACGACGACAAATTTTCAGTGATTTTTGTCAAAATTGGAACGAAAATCAAACTTTTGGCCAAAGTTGGTCACCGTTTGGACCGTACTTGGTGGATCCGAGCCAAATTTACATTTTTTATCTTAAAAGTGTCCCAACAAAGTGTCCCAACTCTCATGATATATAATATCAATGCATAAAAACTAGTTTGAATTTTTCTGTACAACACTATTTTCGATTCTCACAGAGAATGCGTCTTAAATAATTTAATTTTTATATTCATCTTTTTCGTAAATGATATCTTGGTTCAACGGTACACCTTTTGACAATTTTTGGTAACCGGTTAGTCAGAGAGTTTTGCTATCGATCAAAAAAGAATCAGTCAACGCGGACTGAAATTAACCTAGTAAGGAGCTTTCAAAGAAAATTTTTACAAAATGTCGAAAATGGGGGTACAGAATATTGTATTCAAAGGAAGAGGGTGGTGGAAATTTCCATGGAAAATATAGGAGAGAAGAAAAGAAATCTAGTAGTGATAAAATGAAACTGGTGGAAG</canonical>
            <polymorphic>AAACGTCGGGTTCTAAAACGTCCAGGAGCCAAGTTTTTCAAAATATCAAATTGAGAAACTAGAATTTGAGAAAATCAACAAAGGGAAAAATGAAATTTGAAAACTGAGCAAATTTCCAAAATTCGCATGTTTTTGAACGCTTGAAATCGATAGTTCTGAAACTTCTAGGAAGTTATGAAATTCAGTAAAATTCAAAAAGAAATTCAAATTAAAAAATTCGAAATTTTTGGAATTTGGATTTTCGAAAACTGAAATTTTTCAGAAGCTTCAGGTTTTTTAGAATTTTCAAAAAGTTACAAAAAAACCCCGTTCAAAAAAATACAGAAGTGTTCAAGACATGTTCTACGCACGAAGACAATTCTGAAACGCGCGAAGACAGATATTCAAACTCAAACCCATTTTTTCTAGCGTAACTTTGCTGGTTTTGAATCTGACCATATAGTTTTTCAGCTAATGTTAAAATTTTTCACGACGACAAATTTTCAGTGATTTTTGTCAARATTGGAACGAAAATCAAACTTTTGGCCAAAGTTGGTCACCGTTTGGACCGTACTTGGTGGATCCGAGCCAAATTTACATTTTTTATCTTAAAAGTGTCCCAACAAAGTGTCCCAACTCTCATGATATATAATATCAATGCATAAAAACTAGTTTGAATTTTTCTGTACAACACTATTTTCGATTCTCACAGAGAATGCGTCTTAAATAATTTAATTTTTATATTCATCTTTTTCGTAAATGATATCTTGGTTCAACGGTACACCTTTTGACAATTTTTGGTAACCGGTTAGTCAGAGAGTTTTGCTATCGATCAAAAAAGAATCAGTCAACGCGGACTGAAATTAACCTAGTAAGGAGCTTTCAAAGAAAATTTTTACAAAATGTCGAAAATGGGGGTACAGAATATTGTATTCAAAGGAAGAGGGTGGTGGAAATTTCCATGGAAAATATAGGAGAGAAGAAAAGAAATCTAGTAGTGATAAAATGAAACTGGTGGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>104 85 76 71 69 67 64 59 59 52 48 31 29 28 22 22 17 17 14 12 10 9 9 8 7 6 5</canonical_bands>
                <polymorphic_bands>104 93 85 76 69 67 64 59 59 52 48 31 29 28 22 17 17 14 12 10 9 9 8 7 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTCTACGCACGAAGACAAT</pcr_primer_p1>
		<pcr_primer_p2>GATTTCTTTTCTTCTCTCCTATATTT</pcr_primer_p2>
		<pcr_amplicon_size>632</pcr_amplicon_size>
		<canonical_amplicon>GTTCTACGCACGAAGACAATTCTGAAACGCGCGAAGACAGATATTCAAACTCAAACCCATTTTTTCTAGCGTAACTTTGCTGGTTTTGAATCTGACCATATAGTTTTTCAGCTAATGTTAAAATTTTTCACGACGACAAATTTTCAGTGATTTTTGTCAAAATTGGAACGAAAATCAAACTTTTGGCCAAAGTTGGTCACCGTTTGGACCGTACTTGGTGGATCCGAGCCAAATTTACATTTTTTATCTTAAAAGTGTCCCAACAAAGTGTCCCAACTCTCATGATATATAATATCAATGCATAAAAACTAGTTTGAATTTTTCTGTACAACACTATTTTCGATTCTCACAGAGAATGCGTCTTAAATAATTTAATTTTTATATTCATCTTTTTCGTAAATGATATCTTGGTTCAACGGTACACCTTTTGACAATTTTTGGTAACCGGTTAGTCAGAGAGTTTTGCTATCGATCAAAAAAGAATCAGTCAACGCGGACTGAAATTAACCTAGTAAGGAGCTTTCAAAGAAAATTTTTACAAAATGTCGAAAATGGGGGTACAGAATATTGTATTCAAAGGAAGAGGGTGGTGGAAATTTCCATGGAAAATATAGGAGAGAAGAAAAGAAATC</canonical_amplicon>
		<polymorphic_amplicon>GTTCTACGCACGAAGACAATTCTGAAACGCGCGAAGACAGATATTCAAACTCAAACCCATTTTTTCTAGCGTAACTTTGCTGGTTTTGAATCTGACCATATAGTTTTTCAGCTAATGTTAAAATTTTTCACGACGACAAATTTTCAGTGATTTTTGTCAARATTGGAACGAAAATCAAACTTTTGGCCAAAGTTGGTCACCGTTTGGACCGTACTTGGTGGATCCGAGCCAAATTTACATTTTTTATCTTAAAAGTGTCCCAACAAAGTGTCCCAACTCTCATGATATATAATATCAATGCATAAAAACTAGTTTGAATTTTTCTGTACAACACTATTTTCGATTCTCACAGAGAATGCGTCTTAAATAATTTAATTTTTATATTCATCTTTTTCGTAAATGATATCTTGGTTCAACGGTACACCTTTTGACAATTTTTGGTAACCGGTTAGTCAGAGAGTTTTGCTATCGATCAAAAAAGAATCAGTCAACGCGGACTGAAATTAACCTAGTAAGGAGCTTTCAAAGAAAATTTTTACAAAATGTCGAAAATGGGGGTACAGAATATTGTATTCAAAGGAAGAGGGTGGTGGAAATTTCCATGGAAAATATAGGAGAGAAGAAAAGAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38072</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>250486</contig_pos>
        <strand>+</strand>
        <context>TGATTTCTTT[C/G]GTTGATACAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTAGAATGCTGAGTTAATAATTTTTTATTGCAATCTTCCATGATTTCTTT</left_flank>
        <right_flank>GTTGATACATATAAATTTAATATGGACAGGTGCGGGAGAAAACACTGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAGTATACCGATATGATTCATGTTGTCGAGTATCTCCTTTTGCACCAAATTCGGATATTTGGATAAATTCATTTTTAGGTGTCCTGAAACTATTAAAAAAGATTGTAAAGAAAATCGATTGATTGAAACAGAAGGTGAGTCAGAAAAGAGGGGACATGACGTGGCAGATGCAGATACAGAAGACGTAGAGAGTAGATGACCTTGACTGGTGAACACACCCTACTACTCTGTCCCACAGGGACCAACTCTCCATGAAAGGCGAACTAGTTGGTTAGGTCTTAGCTCCTTTCTCAGAGTTAGTGGAAACACAGAGACCAAATCGATCAGGACCAACGGAAAGGACGCCTGGAGGAATGAAGGTTGTGAATTACTCCAAGACATGCTGTTAAATTTTCCAAACAACATGTTTTTCCTAGTGCGTCGGATTCGCATTATTCCTGTAAAGTTTTAGAATGCTGAGTTAATAATTTTTTATTGCAATCTTCCATGATTTCTTTGGTTGATACATATAAATTTAATATGGACAGGTGCGGGAGAAAACACTGAAACAATAAAAAATGACAATGACGTTAGTACAAGATTTAAACAAATAGTAAGTTTTGAATAGCTTTCAGATTCTGAAGATTAATACATTTTTGATAGATTTAATGCAAGAAAAGTTTTGAATGTATAATCGATAATACAATGAATTTGGGGGTGTTTAAAAATCCCTGTCAAGTCGTCCCTATGAAACAATCTTCAAAAAACTCTTCCTCTGTTTTGTCCCATACTTCAACCAAGAACGTTCTTATCGAAACCATAACAGATGCCACACGATTATCAGTTTCTCTGACGATGTATGCATGGCTGGTGATTGGAAACATTTTGTCGTTTTTATAACACCAACAGAAACTGAAAACTGATTGTTCATTTCGAAACTAATCCAAAAAAAACTTACCCAAAACGCACAGTGTACGTTTGCTGTCTGTTTGCATTAATGAATTTCGCCCAAATTCCAT</canonical>
            <polymorphic>AGAAGTATACCGATATGATTCATGTTGTCGAGTATCTCCTTTTGCACCAAATTCGGATATTTGGATAAATTCATTTTTAGGTGTCCTGAAACTATTAAAAAAGATTGTAAAGAAAATCGATTGATTGAAACAGAAGGTGAGTCAGAAAAGAGGGGACATGACGTGGCAGATGCAGATACAGAAGACGTAGAGAGTAGATGACCTTGACTGGTGAACACACCCTACTACTCTGTCCCACAGGGACCAACTCTCCATGAAAGGCGAACTAGTTGGTTAGGTCTTAGCTCCTTTCTCAGAGTTAGTGGAAACACAGAGACCAAATCGATCAGGACCAACGGAAAGGACGCCTGGAGGAATGAAGGTTGTGAATTACTCCAAGACATGCTGTTAAATTTTCCAAACAACATGTTTTTCCTAGTGCGTCGGATTCGCATTATTCCTGTAAAGTTTTAGAATGCTGAGTTAATAATTTTTTATTGCAATCTTCCATGATTTCTTTSGTTGATACATATAAATTTAATATGGACAGGTGCGGGAGAAAACACTGAAACAATAAAAAATGACAATGACGTTAGTACAAGATTTAAACAAATAGTAAGTTTTGAATAGCTTTCAGATTCTGAAGATTAATACATTTTTGATAGATTTAATGCAAGAAAAGTTTTGAATGTATAATCGATAATACAATGAATTTGGGGGTGTTTAAAAATCCCTGTCAAGTCGTCCCTATGAAACAATCTTCAAAAAACTCTTCCTCTGTTTTGTCCCATACTTCAACCAAGAACGTTCTTATCGAAACCATAACAGATGCCACACGATTATCAGTTTCTCTGACGATGTATGCATGGCTGGTGATTGGAAACATTTTGTCGTTTTTATAACACCAACAGAAACTGAAAACTGATTGTTCATTTCGAAACTAATCCAAAAAAAACTTACCCAAAACGCACAGTGTACGTTTGCTGTCTGTTTGCATTAATGAATTTCGCCCAAATTCCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>XcmI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACTCCAAGACATGCTGTTAAAT</pcr_primer_p1>
		<pcr_primer_p2>GAATCTGAAAGCTATTCAAAACTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACTCCAAGACATGCTGTTAAATTTTCCAAACAACATGTTTTTCCTAGTGCGTCGGATTCGCATTATTCCTGTAAAGTTTTAGAATGCTGAGTTAATAATTTTTTATTGCAATCTTCCATGATTTCTTTGGTTGATACATATAAATTTAATATGGACAGGTGCGGGAGAAAACACTGAAACAATAAAAAATGACAATGACGTTAGTACAAGATTTAAACAAATAGTAAGTTTTGAATAGCTTTCAGATTC</canonical_amplicon>
		<polymorphic_amplicon>TACTCCAAGACATGCTGTTAAATTTTCCAAACAACATGTTTTTCCTAGTGCGTCGGATTCGCATTATTCCTGTAAAGTTTTAGAATGCTGAGTTAATAATTTTTTATTGCAATCTTCCATGATTTCTTTSGTTGATACATATAAATTTAATATGGACAGGTGCGGGAGAAAACACTGAAACAATAAAAAATGACAATGACGTTAGTACAAGATTTAAACAAATAGTAAGTTTTGAATAGCTTTCAGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38073</snp_id>
        <super_contig>c012700914.Contig1</super_contig>
        <contig_pos>250557</contig_pos>
        <strand>+</strand>
        <context>TGACAATGAC[A/G]TTAGTACAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATGGACAGGTGCGGGAGAAAACACTGAAACAATAAAAAATGACAATGAC</left_flank>
        <right_flank>TTAGTACAAGATTTAAACAAATAGTAAGTTTTGAATAGCTTTCAGATTCT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTTTAGGTGTCCTGAAACTATTAAAAAAGATTGTAAAGAAAATCGATTGATTGAAACAGAAGGTGAGTCAGAAAAGAGGGGACATGACGTGGCAGATGCAGATACAGAAGACGTAGAGAGTAGATGACCTTGACTGGTGAACACACCCTACTACTCTGTCCCACAGGGACCAACTCTCCATGAAAGGCGAACTAGTTGGTTAGGTCTTAGCTCCTTTCTCAGAGTTAGTGGAAACACAGAGACCAAATCGATCAGGACCAACGGAAAGGACGCCTGGAGGAATGAAGGTTGTGAATTACTCCAAGACATGCTGTTAAATTTTCCAAACAACATGTTTTTCCTAGTGCGTCGGATTCGCATTATTCCTGTAAAGTTTTAGAATGCTGAGTTAATAATTTTTTATTGCAATCTTCCATGATTTCTTTGGTTGATACATATAAATTTAATATGGACAGGTGCGGGAGAAAACACTGAAACAATAAAAAATGACAATGACGTTAGTACAAGATTTAAACAAATAGTAAGTTTTGAATAGCTTTCAGATTCTGAAGATTAATACATTTTTGATAGATTTAATGCAAGAAAAGTTTTGAATGTATAATCGATAATACAATGAATTTGGGGGTGTTTAAAAATCCCTGTCAAGTCGTCCCTATGAAACAATCTTCAAAAAACTCTTCCTCTGTTTTGTCCCATACTTCAACCAAGAACGTTCTTATCGAAACCATAACAGATGCCACACGATTATCAGTTTCTCTGACGATGTATGCATGGCTGGTGATTGGAAACATTTTGTCGTTTTTATAACACCAACAGAAACTGAAAACTGATTGTTCATTTCGAAACTAATCCAAAAAAAACTTACCCAAAACGCACAGTGTACGTTTGCTGTCTGTTTGCATTAATGAATTTCGCCCAAATTCCATTCACAATTCGGTTCAATCAGAATTGTCATGAACAATTCTGATTTGTGCGAATTCCAAATTTTGAAACGCTT</canonical>
            <polymorphic>CATTTTTAGGTGTCCTGAAACTATTAAAAAAGATTGTAAAGAAAATCGATTGATTGAAACAGAAGGTGAGTCAGAAAAGAGGGGACATGACGTGGCAGATGCAGATACAGAAGACGTAGAGAGTAGATGACCTTGACTGGTGAACACACCCTACTACTCTGTCCCACAGGGACCAACTCTCCATGAAAGGCGAACTAGTTGGTTAGGTCTTAGCTCCTTTCTCAGAGTTAGTGGAAACACAGAGACCAAATCGATCAGGACCAACGGAAAGGACGCCTGGAGGAATGAAGGTTGTGAATTACTCCAAGACATGCTGTTAAATTTTCCAAACAACATGTTTTTCCTAGTGCGTCGGATTCGCATTATTCCTGTAAAGTTTTAGAATGCTGAGTTAATAATTTTTTATTGCAATCTTCCATGATTTCTTTGGTTGATACATATAAATTTAATATGGACAGGTGCGGGAGAAAACACTGAAACAATAAAAAATGACAATGACRTTAGTACAAGATTTAAACAAATAGTAAGTTTTGAATAGCTTTCAGATTCTGAAGATTAATACATTTTTGATAGATTTAATGCAAGAAAAGTTTTGAATGTATAATCGATAATACAATGAATTTGGGGGTGTTTAAAAATCCCTGTCAAGTCGTCCCTATGAAACAATCTTCAAAAAACTCTTCCTCTGTTTTGTCCCATACTTCAACCAAGAACGTTCTTATCGAAACCATAACAGATGCCACACGATTATCAGTTTCTCTGACGATGTATGCATGGCTGGTGATTGGAAACATTTTGTCGTTTTTATAACACCAACAGAAACTGAAAACTGATTGTTCATTTCGAAACTAATCCAAAAAAAACTTACCCAAAACGCACAGTGTACGTTTGCTGTCTGTTTGCATTAATGAATTTCGCCCAAATTCCATTCACAATTCGGTTCAATCAGAATTGTCATGAACAATTCTGATTTGTGCGAATTCCAAATTTTGAAACGCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>384 215 172 115 90 24</canonical_bands>
                <polymorphic_bands>599 172 115 90 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCGCATTATTCCTGTAAAGT</pcr_primer_p1>
		<pcr_primer_p2>CGATTATACATTCAAAACTTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTCGCATTATTCCTGTAAAGTTTTAGAATGCTGAGTTAATAATTTTTTATTGCAATCTTCCATGATTTCTTTGGTTGATACATATAAATTTAATATGGACAGGTGCGGGAGAAAACACTGAAACAATAAAAAATGACAATGACGTTAGTACAAGATTTAAACAAATAGTAAGTTTTGAATAGCTTTCAGATTCTGAAGATTAATACATTTTTGATAGATTTAATGCAAGAAAAGTTTTGAATGTATAATCG</canonical_amplicon>
		<polymorphic_amplicon>ATTCGCATTATTCCTGTAAAGTTTTAGAATGCTGAGTTAATAATTTTTTATTGCAATCTTCCATGATTTCTTTGGTTGATACATATAAATTTAATATGGACAGGTGCGGGAGAAAACACTGAAACAATAAAAAATGACAATGACRTTAGTACAAGATTTAAACAAATAGTAAGTTTTGAATAGCTTTCAGATTCTGAAGATTAATACATTTTTGATAGATTTAATGCAAGAAAAGTTTTGAATGTATAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38074</snp_id>
        <super_contig>c012800636.Contig1</super_contig>
        <contig_pos>18935</contig_pos>
        <strand>+</strand>
        <context>CAGTTCGAGT[A/T]ATGTGCCTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATCATAAAAATTAGTTTTCGCTGCGAAACATCAAACAGCAGTTCGAGT</left_flank>
        <right_flank>ATGTGCCTTTAAAGATTTTGAATTTTCTACCGTAATTTTCTGAAAATTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCGGAGACGTTGGCGACGTCGCCGTCGACGATTGACGCAGAGATGACATTGTTTTCCACCTGAAAATAAAAAAGCTGAAAAAATCGGAATTTTCTGGGATTTTTGGGACTTTTAGCGAGTAAATAGTGTAAAAATATCGAGTTTCCTTATGTCTTTTTAGGTAAAAATGTCTTTTTCAGCCCGAAATTTGATCAATTTTAACCCAAACATGATTGAATTTCAGACAAATTCAAAATTCGCTAAAATATTCTTTCGCTGTGAAACTCCAACGATAAAGTTTAAGCATGTGCCTTTAAACCGTAATCGCAATTTTAAAATTGGGATTTTCAGCGGGTTTCAGCTAAATTTTCCAGCGATTTCTGTCGAAAAAATGCAAAACAAATAAATTGCTTGTATTTCTATCAAAATAGCTAAATTGAATCCCTAAAATGCACAAAAAATCCACTGAAAATCATAAAAATTAGTTTTCGCTGCGAAACATCAAACAGCAGTTCGAGTTATGTGCCTTTAAAGATTTTGAATTTTCTACCGTAATTTTCTGAAAATTTTGAATTTTTCGCTAATTTTCAGTGTTTTTCAGCGATTTTTTCGCTAGAAATTTGAATTTTTCGCTAAAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAAAGGGGACACACACACAAAAAAAAGTGCCGCGGAGGGCAAAAGGATAGCATGTGGGGGAGCTCTAATACAGGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAG</canonical>
            <polymorphic>ACCGGAGACGTTGGCGACGTCGCCGTCGACGATTGACGCAGAGATGACATTGTTTTCCACCTGAAAATAAAAAAGCTGAAAAAATCGGAATTTTCTGGGATTTTTGGGACTTTTAGCGAGTAAATAGTGTAAAAATATCGAGTTTCCTTATGTCTTTTTAGGTAAAAATGTCTTTTTCAGCCCGAAATTTGATCAATTTTAACCCAAACATGATTGAATTTCAGACAAATTCAAAATTCGCTAAAATATTCTTTCGCTGTGAAACTCCAACGATAAAGTTTAAGCATGTGCCTTTAAACCGTAATCGCAATTTTAAAATTGGGATTTTCAGCGGGTTTCAGCTAAATTTTCCAGCGATTTCTGTCGAAAAAATGCAAAACAAATAAATTGCTTGTATTTCTATCAAAATAGCTAAATTGAATCCCTAAAATGCACAAAAAATCCACTGAAAATCATAAAAATTAGTTTTCGCTGCGAAACATCAAACAGCAGTTCGAGTWATGTGCCTTTAAAGATTTTGAATTTTCTACCGTAATTTTCTGAAAATTTTGAATTTTTCGCTAATTTTCAGTGTTTTTCAGCGATTTTTTCGCTAGAAATTTGAATTTTTCGCTAAAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAAAGGGGACACACACACAAAAAAAAGTGCCGCGGAGGGCAAAAGGATAGCATGTGGGGGAGCTCTAATACAGGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCCACTGAAAATCATAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GCCAATTACTGTAGAAAAATTACTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAATCCACTGAAAATCATAAAAATTAGTTTTCGCTGCGAAACATCAAACAGCAGTTCGAGTTATGTGCCTTTAAAGATTTTGAATTTTCTACCGTAATTTTCTGAAAATTTTGAATTTTTCGCTAATTTTCAGTGTTTTTCAGCGATTTTTTCGCTAGAAATTTGAATTTTTCGCTAAAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGC</canonical_amplicon>
		<polymorphic_amplicon>AAATCCACTGAAAATCATAAAAATTAGTTTTCGCTGCGAAACATCAAACAGCAGTTCGAGTWATGTGCCTTTAAAGATTTTGAATTTTCTACCGTAATTTTCTGAAAATTTTGAATTTTTCGCTAATTTTCAGTGTTTTTCAGCGATTTTTTCGCTAGAAATTTGAATTTTTCGCTAAAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38075</snp_id>
        <super_contig>c012800636.Contig1</super_contig>
        <contig_pos>19031</contig_pos>
        <strand></strand>
        <context>TTTTTCGCTA[G/A]AAATTTGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTTTGAATTTTTCGCTAATTTTCAGTGTTTTTCAGCGATTTTTTCGCTA</left_flank>
        <right_flank>AAATTTGAATTTTTCGCTAAAAAATTCGAAAAAAAAGGTCTGTGCCTTCA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGATTTTTGGGACTTTTAGCGAGTAAATAGTGTAAAAATATCGAGTTTCCTTATGTCTTTTTAGGTAAAAATGTCTTTTTCAGCCCGAAATTTGATCAATTTTAACCCAAACATGATTGAATTTCAGACAAATTCAAAATTCGCTAAAATATTCTTTCGCTGTGAAACTCCAACGATAAAGTTTAAGCATGTGCCTTTAAACCGTAATCGCAATTTTAAAATTGGGATTTTCAGCGGGTTTCAGCTAAATTTTCCAGCGATTTCTGTCGAAAAAATGCAAAACAAATAAATTGCTTGTATTTCTATCAAAATAGCTAAATTGAATCCCTAAAATGCACAAAAAATCCACTGAAAATCATAAAAATTAGTTTTCGCTGCGAAACATCAAACAGCAGTTCGAGTTATGTGCCTTTAAAGATTTTGAATTTTCTACCGTAATTTTCTGAAAATTTTGAATTTTTCGCTAATTTTCAGTGTTTTTCAGCGATTTTTTCGCTAGAAATTTGAATTTTTCGCTAAAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAAAGGGGACACACACACAAAAAAAAGTGCCGCGGAGGGCAAAAGGATAGCATGTGGGGGAGCTCTAATACAGGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGAGAGACGCAGAGAAAAGTGATGGTGGAGGGTAATGGTGGGGAAAAGGGGATACAAAAAAGTGATGTCATTGGTGTCAGACGG</canonical>
            <polymorphic>GGGATTTTTGGGACTTTTAGCGAGTAAATAGTGTAAAAATATCGAGTTTCCTTATGTCTTTTTAGGTAAAAATGTCTTTTTCAGCCCGAAATTTGATCAATTTTAACCCAAACATGATTGAATTTCAGACAAATTCAAAATTCGCTAAAATATTCTTTCGCTGTGAAACTCCAACGATAAAGTTTAAGCATGTGCCTTTAAACCGTAATCGCAATTTTAAAATTGGGATTTTCAGCGGGTTTCAGCTAAATTTTCCAGCGATTTCTGTCGAAAAAATGCAAAACAAATAAATTGCTTGTATTTCTATCAAAATAGCTAAATTGAATCCCTAAAATGCACAAAAAATCCACTGAAAATCATAAAAATTAGTTTTCGCTGCGAAACATCAAACAGCAGTTCGAGTTATGTGCCTTTAAAGATTTTGAATTTTCTACCGTAATTTTCTGAAAATTTTGAATTTTTCGCTAATTTTCAGTGTTTTTCAGCGATTTTTTCGCTARAAATTTGAATTTTTCGCTAAAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAAAGGGGACACACACACAAAAAAAAGTGCCGCGGAGGGCAAAAGGATAGCATGTGGGGGAGCTCTAATACAGGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGAGAGACGCAGAGAAAAGTGATGGTGGAGGGTAATGGTGGGGAAAAGGGGATACAAAAAAGTGATGTCATTGGTGTCAGACGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAATTTTCTACCGTAATTTTC</pcr_primer_p1>
		<pcr_primer_p2>GATAGGTCAGATTCTGTGTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTGAATTTTCTACCGTAATTTTCTGAAAATTTTGAATTTTTCGCTAATTTTCAGTGTTTTTCAGCGATTTTTTCGCTAGAAATTTGAATTTTTCGCTAAAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATC</canonical_amplicon>
		<polymorphic_amplicon>TTGAATTTTCTACCGTAATTTTCTGAAAATTTTGAATTTTTCGCTAATTTTCAGTGTTTTTCAGCGATTTTTTCGCTARAAATTTGAATTTTTCGCTAAAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38076</snp_id>
        <super_contig>c012800636.Contig1</super_contig>
        <contig_pos>19050</contig_pos>
        <strand>+</strand>
        <context>ATTTTTCGCT[A/G]AAAAATTCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCAGTGTTTTTCAGCGATTTTTTCGCTAGAAATTTGAATTTTTCGCT</left_flank>
        <right_flank>AAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGAGTAAATAGTGTAAAAATATCGAGTTTCCTTATGTCTTTTTAGGTAAAAATGTCTTTTTCAGCCCGAAATTTGATCAATTTTAACCCAAACATGATTGAATTTCAGACAAATTCAAAATTCGCTAAAATATTCTTTCGCTGTGAAACTCCAACGATAAAGTTTAAGCATGTGCCTTTAAACCGTAATCGCAATTTTAAAATTGGGATTTTCAGCGGGTTTCAGCTAAATTTTCCAGCGATTTCTGTCGAAAAAATGCAAAACAAATAAATTGCTTGTATTTCTATCAAAATAGCTAAATTGAATCCCTAAAATGCACAAAAAATCCACTGAAAATCATAAAAATTAGTTTTCGCTGCGAAACATCAAACAGCAGTTCGAGTTATGTGCCTTTAAAGATTTTGAATTTTCTACCGTAATTTTCTGAAAATTTTGAATTTTTCGCTAATTTTCAGTGTTTTTCAGCGATTTTTTCGCTAGAAATTTGAATTTTTCGCTAAAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAAAGGGGACACACACACAAAAAAAAGTGCCGCGGAGGGCAAAAGGATAGCATGTGGGGGAGCTCTAATACAGGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGAGAGACGCAGAGAAAAGTGATGGTGGAGGGTAATGGTGGGGAAAAGGGGATACAAAAAAGTGATGTCATTGGTGTCAGACGGGAAGTGTAAACAGGCGGGT</canonical>
            <polymorphic>GCGAGTAAATAGTGTAAAAATATCGAGTTTCCTTATGTCTTTTTAGGTAAAAATGTCTTTTTCAGCCCGAAATTTGATCAATTTTAACCCAAACATGATTGAATTTCAGACAAATTCAAAATTCGCTAAAATATTCTTTCGCTGTGAAACTCCAACGATAAAGTTTAAGCATGTGCCTTTAAACCGTAATCGCAATTTTAAAATTGGGATTTTCAGCGGGTTTCAGCTAAATTTTCCAGCGATTTCTGTCGAAAAAATGCAAAACAAATAAATTGCTTGTATTTCTATCAAAATAGCTAAATTGAATCCCTAAAATGCACAAAAAATCCACTGAAAATCATAAAAATTAGTTTTCGCTGCGAAACATCAAACAGCAGTTCGAGTTATGTGCCTTTAAAGATTTTGAATTTTCTACCGTAATTTTCTGAAAATTTTGAATTTTTCGCTAATTTTCAGTGTTTTTCAGCGATTTTTTCGCTAGAAATTTGAATTTTTCGCTRAAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAAAGGGGACACACACACAAAAAAAAGTGCCGCGGAGGGCAAAAGGATAGCATGTGGGGGAGCTCTAATACAGGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGAGAGACGCAGAGAAAAGTGATGGTGGAGGGTAATGGTGGGGAAAAGGGGATACAAAAAAGTGATGTCATTGGTGTCAGACGGGAAGTGTAAACAGGCGGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAATTTTCTACCGTAATTTTC</pcr_primer_p1>
		<pcr_primer_p2>GATAGGTCAGATTCTGTGTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTGAATTTTCTACCGTAATTTTCTGAAAATTTTGAATTTTTCGCTAATTTTCAGTGTTTTTCAGCGATTTTTTCGCTAGAAATTTGAATTTTTCGCTAAAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATC</canonical_amplicon>
		<polymorphic_amplicon>TTGAATTTTCTACCGTAATTTTCTGAAAATTTTGAATTTTTCGCTAATTTTCAGTGTTTTTCAGCGATTTTTTCGCTAGAAATTTGAATTTTTCGCTRAAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38077</snp_id>
        <super_contig>c012800636.Contig1</super_contig>
        <contig_pos>19134</contig_pos>
        <strand>+</strand>
        <context>CGAAAAGCGA[C/T]TTTTTTTCGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGA</left_flank>
        <right_flank>TTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACCCAAACATGATTGAATTTCAGACAAATTCAAAATTCGCTAAAATATTCTTTCGCTGTGAAACTCCAACGATAAAGTTTAAGCATGTGCCTTTAAACCGTAATCGCAATTTTAAAATTGGGATTTTCAGCGGGTTTCAGCTAAATTTTCCAGCGATTTCTGTCGAAAAAATGCAAAACAAATAAATTGCTTGTATTTCTATCAAAATAGCTAAATTGAATCCCTAAAATGCACAAAAAATCCACTGAAAATCATAAAAATTAGTTTTCGCTGCGAAACATCAAACAGCAGTTCGAGTTATGTGCCTTTAAAGATTTTGAATTTTCTACCGTAATTTTCTGAAAATTTTGAATTTTTCGCTAATTTTCAGTGTTTTTCAGCGATTTTTTCGCTAGAAATTTGAATTTTTCGCTAAAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAAAGGGGACACACACACAAAAAAAAGTGCCGCGGAGGGCAAAAGGATAGCATGTGGGGGAGCTCTAATACAGGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGAGAGACGCAGAGAAAAGTGATGGTGGAGGGTAATGGTGGGGAAAAGGGGATACAAAAAAGTGATGTCATTGGTGTCAGACGGGAAGTGTAAACAGGCGGGTGAGAGGGGTCAGATTGGCCCGTCGTTCAAAGCTGCGGCCATTCGAAAGGGCAAGGTTTTGGTTTAATGGTCACTCTAGGGGCGA</canonical>
            <polymorphic>TAACCCAAACATGATTGAATTTCAGACAAATTCAAAATTCGCTAAAATATTCTTTCGCTGTGAAACTCCAACGATAAAGTTTAAGCATGTGCCTTTAAACCGTAATCGCAATTTTAAAATTGGGATTTTCAGCGGGTTTCAGCTAAATTTTCCAGCGATTTCTGTCGAAAAAATGCAAAACAAATAAATTGCTTGTATTTCTATCAAAATAGCTAAATTGAATCCCTAAAATGCACAAAAAATCCACTGAAAATCATAAAAATTAGTTTTCGCTGCGAAACATCAAACAGCAGTTCGAGTTATGTGCCTTTAAAGATTTTGAATTTTCTACCGTAATTTTCTGAAAATTTTGAATTTTTCGCTAATTTTCAGTGTTTTTCAGCGATTTTTTCGCTAGAAATTTGAATTTTTCGCTAAAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGAYTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAAAGGGGACACACACACAAAAAAAAGTGCCGCGGAGGGCAAAAGGATAGCATGTGGGGGAGCTCTAATACAGGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGAGAGACGCAGAGAAAAGTGATGGTGGAGGGTAATGGTGGGGAAAAGGGGATACAAAAAAGTGATGTCATTGGTGTCAGACGGGAAGTGTAAACAGGCGGGTGAGAGGGGTCAGATTGGCCCGTCGTTCAAAGCTGCGGCCATTCGAAAGGGCAAGGTTTTGGTTTAATGGTCACTCTAGGGGCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAATTTTCTACCGTAATTTTC</pcr_primer_p1>
		<pcr_primer_p2>GATAGGTCAGATTCTGTGTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTGAATTTTCTACCGTAATTTTCTGAAAATTTTGAATTTTTCGCTAATTTTCAGTGTTTTTCAGCGATTTTTTCGCTAGAAATTTGAATTTTTCGCTAAAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATC</canonical_amplicon>
		<polymorphic_amplicon>TTGAATTTTCTACCGTAATTTTCTGAAAATTTTGAATTTTTCGCTAATTTTCAGTGTTTTTCAGCGATTTTTTCGCTAGAAATTTGAATTTTTCGCTAAAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGAYTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38078</snp_id>
        <super_contig>c012800636.Contig1</super_contig>
        <contig_pos>19219</contig_pos>
        <strand>+</strand>
        <context>GGCGACCCTG[A/T]WAAAACCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTG</left_flank>
        <right_flank>GAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGTGCCTTTAAACCGTAATCGCAATTTTAAAATTGGGATTTTCAGCGGGTTTCAGCTAAATTTTCCAGCGATTTCTGTCGAAAAAATGCAAAACAAATAAATTGCTTGTATTTCTATCAAAATAGCTAAATTGAATCCCTAAAATGCACAAAAAATCCACTGAAAATCATAAAAATTAGTTTTCGCTGCGAAACATCAAACAGCAGTTCGAGTTATGTGCCTTTAAAGATTTTGAATTTTCTACCGTAATTTTCTGAAAATTTTGAATTTTTCGCTAATTTTCAGTGTTTTTCAGCGATTTTTTCGCTAGAAATTTGAATTTTTCGCTAAAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAAAGGGGACACACACACAAAAAAAAGTGCCGCGGAGGGCAAAAGGATAGCATGTGGGGGAGCTCTAATACAGGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGAGAGACGCAGAGAAAAGTGATGGTGGAGGGTAATGGTGGGGAAAAGGGGATACAAAAAAGTGATGTCATTGGTGTCAGACGGGAAGTGTAAACAGGCGGGTGAGAGGGGTCAGATTGGCCCGTCGTTCAAAGCTGCGGCCATTCGAAAGGGCAAGGTTTTGGTTTAATGGTCACTCTAGGGGCGAGTGTTGGGTAGAAGGCTCTAGAGCTCCAAAGAGCTTGTAAGCTATATTGAATGTTCTAGAAGCCTTGGTCTCTAGGGGGGAGTCC</canonical>
            <polymorphic>CATGTGCCTTTAAACCGTAATCGCAATTTTAAAATTGGGATTTTCAGCGGGTTTCAGCTAAATTTTCCAGCGATTTCTGTCGAAAAAATGCAAAACAAATAAATTGCTTGTATTTCTATCAAAATAGCTAAATTGAATCCCTAAAATGCACAAAAAATCCACTGAAAATCATAAAAATTAGTTTTCGCTGCGAAACATCAAACAGCAGTTCGAGTTATGTGCCTTTAAAGATTTTGAATTTTCTACCGTAATTTTCTGAAAATTTTGAATTTTTCGCTAATTTTCAGTGTTTTTCAGCGATTTTTTCGCTAGAAATTTGAATTTTTCGCTAAAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGWGAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAAAGGGGACACACACACAAAAAAAAGTGCCGCGGAGGGCAAAAGGATAGCATGTGGGGGAGCTCTAATACAGGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGAGAGACGCAGAGAAAAGTGATGGTGGAGGGTAATGGTGGGGAAAAGGGGATACAAAAAAGTGATGTCATTGGTGTCAGACGGGAAGTGTAAACAGGCGGGTGAGAGGGGTCAGATTGGCCCGTCGTTCAAAGCTGCGGCCATTCGAAAGGGCAAGGTTTTGGTTTAATGGTCACTCTAGGGGCGAGTGTTGGGTAGAAGGCTCTAGAGCTCCAAAGAGCTTGTAAGCTATATTGAATGTTCTAGAAGCCTTGGTCTCTAGGGGGGAGTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAGATTTTCAATTTTTCTACAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTCTGCGTCTCTCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGWGAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38079</snp_id>
        <super_contig>c012800636.Contig1</super_contig>
        <contig_pos>19220</contig_pos>
        <strand>+</strand>
        <context>GCGACCCTGW[A/T]AAAACCAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGA</left_flank>
        <right_flank>AAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTGCCTTTAAACCGTAATCGCAATTTTAAAATTGGGATTTTCAGCGGGTTTCAGCTAAATTTTCCAGCGATTTCTGTCGAAAAAATGCAAAACAAATAAATTGCTTGTATTTCTATCAAAATAGCTAAATTGAATCCCTAAAATGCACAAAAAATCCACTGAAAATCATAAAAATTAGTTTTCGCTGCGAAACATCAAACAGCAGTTCGAGTTATGTGCCTTTAAAGATTTTGAATTTTCTACCGTAATTTTCTGAAAATTTTGAATTTTTCGCTAATTTTCAGTGTTTTTCAGCGATTTTTTCGCTAGAAATTTGAATTTTTCGCTAAAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAAAGGGGACACACACACAAAAAAAAGTGCCGCGGAGGGCAAAAGGATAGCATGTGGGGGAGCTCTAATACAGGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGAGAGACGCAGAGAAAAGTGATGGTGGAGGGTAATGGTGGGGAAAAGGGGATACAAAAAAGTGATGTCATTGGTGTCAGACGGGAAGTGTAAACAGGCGGGTGAGAGGGGTCAGATTGGCCCGTCGTTCAAAGCTGCGGCCATTCGAAAGGGCAAGGTTTTGGTTTAATGGTCACTCTAGGGGCGAGTGTTGGGTAGAAGGCTCTAGAGCTCCAAAGAGCTTGTAAGCTATATTGAATGTTCTAGAAGCCTTGGTCTCTAGGGGGGAGTCCA</canonical>
            <polymorphic>ATGTGCCTTTAAACCGTAATCGCAATTTTAAAATTGGGATTTTCAGCGGGTTTCAGCTAAATTTTCCAGCGATTTCTGTCGAAAAAATGCAAAACAAATAAATTGCTTGTATTTCTATCAAAATAGCTAAATTGAATCCCTAAAATGCACAAAAAATCCACTGAAAATCATAAAAATTAGTTTTCGCTGCGAAACATCAAACAGCAGTTCGAGTTATGTGCCTTTAAAGATTTTGAATTTTCTACCGTAATTTTCTGAAAATTTTGAATTTTTCGCTAATTTTCAGTGTTTTTCAGCGATTTTTTCGCTAGAAATTTGAATTTTTCGCTAAAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAWAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAAAGGGGACACACACACAAAAAAAAGTGCCGCGGAGGGCAAAAGGATAGCATGTGGGGGAGCTCTAATACAGGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGAGAGACGCAGAGAAAAGTGATGGTGGAGGGTAATGGTGGGGAAAAGGGGATACAAAAAAGTGATGTCATTGGTGTCAGACGGGAAGTGTAAACAGGCGGGTGAGAGGGGTCAGATTGGCCCGTCGTTCAAAGCTGCGGCCATTCGAAAGGGCAAGGTTTTGGTTTAATGGTCACTCTAGGGGCGAGTGTTGGGTAGAAGGCTCTAGAGCTCCAAAGAGCTTGTAAGCTATATTGAATGTTCTAGAAGCCTTGGTCTCTAGGGGGGAGTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAGATTTTCAATTTTTCTACAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTCTGCGTCTCTCTTAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAWAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38080</snp_id>
        <super_contig>c012800636.Contig1</super_contig>
        <contig_pos>19548</contig_pos>
        <strand>+</strand>
        <context>TAAACAGGCG[A/G]GTGAGAGGGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATACAAAAAAGTGATGTCATTGGTGTCAGACGGGAAGTGTAAACAGGCG</left_flank>
        <right_flank>GTGAGAGGGGTCAGATTGGCCCGTCGTTCAAAGCTGCGGCCATTCGAAAG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAAAGGGGACACACACACAAAAAAAAGTGCCGCGGAGGGCAAAAGGATAGCATGTGGGGGAGCTCTAATACAGGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGAGAGACGCAGAGAAAAGTGATGGTGGAGGGTAATGGTGGGGAAAAGGGGATACAAAAAAGTGATGTCATTGGTGTCAGACGGGAAGTGTAAACAGGCGGGTGAGAGGGGTCAGATTGGCCCGTCGTTCAAAGCTGCGGCCATTCGAAAGGGCAAGGTTTTGGTTTAATGGTCACTCTAGGGGCGAGTGTTGGGTAGAAGGCTCTAGAGCTCCAAAGAGCTTGTAAGCTATATTGAATGTTCTAGAAGCCTTGGTCTCTAGGGGGGAGTCCAGGGCTTCAGAGAGTGTTAAAGCTTCTAGAAGTTTCTAGAACTTTCAGGGTGTCAAAACTTGGAAGTTCGTAGCTGGAAAAGGGTCTGGAAGGCTGGAATGCTCTGGAAAGGTCTAGAAGCGTTTCTGGATGTCCTTGAGCTCCTAACAACCTTCTGGAAGTTTCTAGAAGTTTCTAGAAGCGTCCAGAACTATCTAGAAGACAATAAGTCGGTATTTGAATTTAGAAAAAAAAACTTGGCTAGAAAGCTCTAGAATCCTCGAGAGATCAGTCTGGATGTTTCCAAAAGTTATTGTTTCCTTTGATTCGTCTAAACAGCTGAATGTCGC</canonical>
            <polymorphic>TAAAAAATTCGAAAAAAAAGGTCTGTGCCTTCAAGATTTTCAATTTTTCTACAGTAATTTTTCTACAGTAATTGGCGAAAAGCGATTTTTTTTCGCCAAAAAATCAAATTCAAATTTAAAAAAAATGTCTGTGTCAACACAGAATCTGACCTATCTTCCTGGCGACCCTGAGAAAACCAAAAAAAAGAGAGAAAAAGAAAAGGGGAACGGCGCTGGCGGCCTTGTGTATGCTGCCCTCCCATATAATACTGTATGGGAGAGATAAGAGAGACGCAGAGAAAAAAGGGGACACACACACAAAAAAAAGTGCCGCGGAGGGCAAAAGGATAGCATGTGGGGGAGCTCTAATACAGGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGAGAGACGCAGAGAAAAGTGATGGTGGAGGGTAATGGTGGGGAAAAGGGGATACAAAAAAGTGATGTCATTGGTGTCAGACGGGAAGTGTAAACAGGCGRGTGAGAGGGGTCAGATTGGCCCGTCGTTCAAAGCTGCGGCCATTCGAAAGGGCAAGGTTTTGGTTTAATGGTCACTCTAGGGGCGAGTGTTGGGTAGAAGGCTCTAGAGCTCCAAAGAGCTTGTAAGCTATATTGAATGTTCTAGAAGCCTTGGTCTCTAGGGGGGAGTCCAGGGCTTCAGAGAGTGTTAAAGCTTCTAGAAGTTTCTAGAACTTTCAGGGTGTCAAAACTTGGAAGTTCGTAGCTGGAAAAGGGTCTGGAAGGCTGGAATGCTCTGGAAAGGTCTAGAAGCGTTTCTGGATGTCCTTGAGCTCCTAACAACCTTCTGGAAGTTTCTAGAAGTTTCTAGAAGCGTCCAGAACTATCTAGAAGACAATAAGTCGGTATTTGAATTTAGAAAAAAAAACTTGGCTAGAAAGCTCTAGAATCCTCGAGAGATCAGTCTGGATGTTTCCAAAAGTTATTGTTTCCTTTGATTCGTCTAAACAGCTGAATGTCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>504 215 186 95</canonical_bands>
                <polymorphic_bands>690 215 95</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTGGGGGAGCTCTAATAC</pcr_primer_p1>
		<pcr_primer_p2>CTAGAGTGACCATTAAACCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGTGGGGGAGCTCTAATACAGGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGAGAGACGCAGAGAAAAGTGATGGTGGAGGGTAATGGTGGGGAAAAGGGGATACAAAAAAGTGATGTCATTGGTGTCAGACGGGAAGTGTAAACAGGCGGGTGAGAGGGGTCAGATTGGCCCGTCGTTCAAAGCTGCGGCCATTCGAAAGGGCAAGGTTTTGGTTTAATGGTCACTCTAG</canonical_amplicon>
		<polymorphic_amplicon>ATGTGGGGGAGCTCTAATACAGGCAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGAGAGACGCAGAGAAAAGTGATGGTGGAGGGTAATGGTGGGGAAAAGGGGATACAAAAAAGTGATGTCATTGGTGTCAGACGGGAAGTGTAAACAGGCGRGTGAGAGGGGTCAGATTGGCCCGTCGTTCAAAGCTGCGGCCATTCGAAAGGGCAAGGTTTTGGTTTAATGGTCACTCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38081</snp_id>
        <super_contig>c012800636.Contig1</super_contig>
        <contig_pos>24519</contig_pos>
        <strand></strand>
        <context>taggctcatt[T/C]tgaagctgag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGCGCTCTAACCCCAAAATTGAGCGGAGCCTAGTCATGTTTAGGCTCATT</left_flank>
        <right_flank>TGAAGCTGAGAACCTGGTAAATTCAAATTTTAACATTTCAAGCGTTTTCA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCAGCTAACCTAAGCATGTTTATACTCATTTGGAAGCGTAAGATGTGAGAAATTTAAAATTCAAATTTTTATAAAGATTGAAGCAAAACCAAGCGAGTTATGGTAGTTTGAATGTTTTGCAGTTCTAGGGATTACTGTAGTTTTTGTAGTTCGCCTCTCCGTGAGCCAAAACTAGGCGTGTTTATACTCATTTTCAAGCTCACAACATGAGAAATCTGAAAATTTAAAAATTGCTAAATTCGGACAGAAAACAATAAAGTTACGGTGGTTTTTCGAAATTTCCAAAAATATTGGTTTTTCTCATAAATCCCTGAATTTCCAAAATTTTGAATCAAAACTTAACTATTTGAATTTAGCTCATTGTGAGCTTCAAAATGAGTATAAACACGCCTAGGCTCCGCCCACGTTGAGTTTCGAGGTTAGAGACGCAGCGTGTCTCGTTTCTCTGGCGCTCTAACCCCAAAATTGAGCGGAGCCTAGTCATGTTTAGGCTCATTTTGAAGCTGAGAACCTGGTAAATTCAAATTTTAACATTTCAAGCGTTTTCAGATTCTCAGTTCGCTGAAAAATGAGCATTTTCAGTCGAATAAAAAAATTTTGACTTGAAAAAGTGAAAACAAGAGCAGAAGGGGAGAGAAACGAATGGCTATGAGCATAGCATCTACATTTTTTTCTCTTTATTTTTTTTCACTGCGTCTCTTCACTCTCTCGTTTCCAGAGAGAATGGAACGGGACAGAGAATAACACGAAAACAAGCATCGCCCGGAGGGGAAAATGCTGAAAACGGAAATTGGAAAAAAAAATTCTAGATGGGGTAAGTGCGCTCCACTGGACAGAGGACCCAAGAGTGCAAAAAACAAAGGAAGTCGTCTGTCTGGGGATCAGAGAGCACTTTTTTTGGAGATTTTTTTGAAAAATAATTTTGAAAATCTTCCAAAATTTATTTTAAATGTAATTTTTGAAAAAATTCAGCTAAATATTTGAGTTCAGCAAGTTCA</canonical>
            <polymorphic>CTTCAGCTAACCTAAGCATGTTTATACTCATTTGGAAGCGTAAGATGTGAGAAATTTAAAATTCAAATTTTTATAAAGATTGAAGCAAAACCAAGCGAGTTATGGTAGTTTGAATGTTTTGCAGTTCTAGGGATTACTGTAGTTTTTGTAGTTCGCCTCTCCGTGAGCCAAAACTAGGCGTGTTTATACTCATTTTCAAGCTCACAACATGAGAAATCTGAAAATTTAAAAATTGCTAAATTCGGACAGAAAACAATAAAGTTACGGTGGTTTTTCGAAATTTCCAAAAATATTGGTTTTTCTCATAAATCCCTGAATTTCCAAAATTTTGAATCAAAACTTAACTATTTGAATTTAGCTCATTGTGAGCTTCAAAATGAGTATAAACACGCCTAGGCTCCGCCCACGTTGAGTTTCGAGGTTAGAGACGCAGCGTGTCTCGTTTCTCTGGCGCTCTAACCCCAAAATTGAGCGGAGCCTAGTCATGTTTAGGCTCATTYTGAAGCTGAGAACCTGGTAAATTCAAATTTTAACATTTCAAGCGTTTTCAGATTCTCAGTTCGCTGAAAAATGAGCATTTTCAGTCGAATAAAAAAATTTTGACTTGAAAAAGTGAAAACAAGAGCAGAAGGGGAGAGAAACGAATGGCTATGAGCATAGCATCTACATTTTTTTCTCTTTATTTTTTTTCACTGCGTCTCTTCACTCTCTCGTTTCCAGAGAGAATGGAACGGGACAGAGAATAACACGAAAACAAGCATCGCCCGGAGGGGAAAATGCTGAAAACGGAAATTGGAAAAAAAAATTCTAGATGGGGTAAGTGCGCTCCACTGGACAGAGGACCCAAGAGTGCAAAAAACAAAGGAAGTCGTCTGTCTGGGGATCAGAGAGCACTTTTTTTGGAGATTTTTTTGAAAAATAATTTTGAAAATCTTCCAAAATTTATTTTAAATGTAATTTTTGAAAAAATTCAGCTAAATATTTGAGTTCAGCAAGTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGGTCATATGAGTTCAGAAA</pcr_primer_p1>
		<pcr_primer_p2>GCTCTTGTTTTCACTTTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>988</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAGCTGAGAACCTGGTAAATTCAAATTTTAACATTTCAAGCGTTTTCAGATTCTCAGTTCGCTGAAAAATGAGCATTTTCAGTCGAATAAAAAAATTTTGACTTGAAAAAGTGAAAACAAGAGC</canonical_amplicon>
		<polymorphic_amplicon>TYTGAAGCTGAGAACCTGGTAAATTCAAATTTTAACATTTCAAGCGTTTTCAGATTCTCAGTTCGCTGAAAAATGAGCATTTTCAGTCGAATAAAAAAATTTTGACTTGAAAAAGTGAAAACAAGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38082</snp_id>
        <super_contig>c012800636.Contig1</super_contig>
        <contig_pos>24953</contig_pos>
        <strand></strand>
        <context>tttgaaaatc[T/C]tccaaaattt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCAGAGAGCACTTTTTTTGGAGATTTTTTTGAAAAATAATTTTGAAAATC</left_flank>
        <right_flank>TCCAAAATTTATTTTAAATGTAATTTTTGAAAAAATTCAGCTAAATATTT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGTCTCGTTTCTCTGGCGCTCTAACCCCAAAATTGAGCGGAGCCTAGTCATGTTTAGGCTCATTTTGAAGCTGAGAACCTGGTAAATTCAAATTTTAACATTTCAAGCGTTTTCAGATTCTCAGTTCGCTGAAAAATGAGCATTTTCAGTCGAATAAAAAAATTTTGACTTGAAAAAGTGAAAACAAGAGCAGAAGGGGAGAGAAACGAATGGCTATGAGCATAGCATCTACATTTTTTTCTCTTTATTTTTTTTCACTGCGTCTCTTCACTCTCTCGTTTCCAGAGAGAATGGAACGGGACAGAGAATAACACGAAAACAAGCATCGCCCGGAGGGGAAAATGCTGAAAACGGAAATTGGAAAAAAAAATTCTAGATGGGGTAAGTGCGCTCCACTGGACAGAGGACCCAAGAGTGCAAAAAACAAAGGAAGTCGTCTGTCTGGGGATCAGAGAGCACTTTTTTTGGAGATTTTTTTGAAAAATAATTTTGAAAATCTTCCAAAATTTATTTTAAATGTAATTTTTGAAAAAATTCAGCTAAATATTTGAGTTCAGCAAGTTCATAGCTTCAAAATGAGTATAAACATGCCTAGGCTCCGCCCATTTTGAAGTTTCGACTTTAAAGGCGCATAGGGGGTGTGAAATTTCATAATGGGCGGAGCCTAAGCATGATTATACTCATTTTAAAGCCCTCAACGTGAGAAATTCAAAACTGTTAGTTTCATAAAATTAGAAGCAAAACGAACCAAGTTACGGTAGTTTCAATTTTTGAGATTACTGTATTTTTTGTAGTTCGATTCTTTTTTTCTTTTTTAAATCACACCATGTGGTTTCATGCATACAAAGATAAAAATTTTAAAAGGAAAACTATGCTGAATTTTTTTTGTTTACAATTGGTGGACAGGGAGCCGGACTGCAAAAACTACAGTAACCCTCTGAAATTGAAACTGCAGTAACTCTCTTCATTTCGCTTCAATTTTTATGAAAATTACAAATT</canonical>
            <polymorphic>GTGTCTCGTTTCTCTGGCGCTCTAACCCCAAAATTGAGCGGAGCCTAGTCATGTTTAGGCTCATTTTGAAGCTGAGAACCTGGTAAATTCAAATTTTAACATTTCAAGCGTTTTCAGATTCTCAGTTCGCTGAAAAATGAGCATTTTCAGTCGAATAAAAAAATTTTGACTTGAAAAAGTGAAAACAAGAGCAGAAGGGGAGAGAAACGAATGGCTATGAGCATAGCATCTACATTTTTTTCTCTTTATTTTTTTTCACTGCGTCTCTTCACTCTCTCGTTTCCAGAGAGAATGGAACGGGACAGAGAATAACACGAAAACAAGCATCGCCCGGAGGGGAAAATGCTGAAAACGGAAATTGGAAAAAAAAATTCTAGATGGGGTAAGTGCGCTCCACTGGACAGAGGACCCAAGAGTGCAAAAAACAAAGGAAGTCGTCTGTCTGGGGATCAGAGAGCACTTTTTTTGGAGATTTTTTTGAAAAATAATTTTGAAAATCYTCCAAAATTTATTTTAAATGTAATTTTTGAAAAAATTCAGCTAAATATTTGAGTTCAGCAAGTTCATAGCTTCAAAATGAGTATAAACATGCCTAGGCTCCGCCCATTTTGAAGTTTCGACTTTAAAGGCGCATAGGGGGTGTGAAATTTCATAATGGGCGGAGCCTAAGCATGATTATACTCATTTTAAAGCCCTCAACGTGAGAAATTCAAAACTGTTAGTTTCATAAAATTAGAAGCAAAACGAACCAAGTTACGGTAGTTTCAATTTTTGAGATTACTGTATTTTTTGTAGTTCGATTCTTTTTTTCTTTTTTAAATCACACCATGTGGTTTCATGCATACAAAGATAAAAATTTTAAAAGGAAAACTATGCTGAATTTTTTTTGTTTACAATTGGTGGACAGGGAGCCGGACTGCAAAAACTACAGTAACCCTCTGAAATTGAAACTGCAGTAACTCTCTTCATTTCGCTTCAATTTTTATGAAAATTACAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>497 467 36</canonical_bands>
                <polymorphic_bands>533 467</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAGGAAGTCGTCTGTCTG</pcr_primer_p1>
		<pcr_primer_p2>TTGTATGCATGAAACCACAT</pcr_primer_p2>
		<pcr_amplicon_size>422</pcr_amplicon_size>
		<canonical_amplicon>CAAAGGAAGTCGTCTGTCTGGGGATCAGAGAGCACTTTTTTTGGAGATTTTTTTGAAAAATAATTTTGAAAATCTTCCAAAATTTATTTTAAATGTAATTTTTGAAAAAATTCAGCTAAATATTTGAGTTCAGCAAGTTCATAGCTTCAAAATGAGTATAAACATGCCTAGGCTCCGCCCATTTTGAAGTTTCGACTTTAAAGGCGCATAGGGGGTGTGAAATTTCATAATGGGCGGAGCCTAAGCATGATTATACTCATTTTAAAGCCCTCAACGTGAGAAATTCAAAACTGTTAGTTTCATAAAATTAGAAGCAAAACGAACCAAGTTACGGTAGTTTCAATTTTTGAGATTACTGTATTTTTTGTAGTTCGATTCTTTTTTTCTTTTTTAAATCACACCATGTGGTTTCATGCATACAA</canonical_amplicon>
		<polymorphic_amplicon>CAAAGGAAGTCGTCTGTCTGGGGATCAGAGAGCACTTTTTTTGGAGATTTTTTTGAAAAATAATTTTGAAAATCYTCCAAAATTTATTTTAAATGTAATTTTTGAAAAAATTCAGCTAAATATTTGAGTTCAGCAAGTTCATAGCTTCAAAATGAGTATAAACATGCCTAGGCTCCGCCCATTTTGAAGTTTCGACTTTAAAGGCGCATAGGGGGTGTGAAATTTCATAATGGGCGGAGCCTAAGCATGATTATACTCATTTTAAAGCCCTCAACGTGAGAAATTCAAAACTGTTAGTTTCATAAAATTAGAAGCAAAACGAACCAAGTTACGGTAGTTTCAATTTTTGAGATTACTGTATTTTTTGTAGTTCGATTCTTTTTTTCTTTTTTAAATCACACCATGTGGTTTCATGCATACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38094</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>17261</contig_pos>
        <strand>+</strand>
        <context>TTTTTCGGTT[A/G]AACCGAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATAGATAAGAAACGGGTTTTCAAGGTCGATTTCATGCTTTTTTCGGTT</left_flank>
        <right_flank>AACCGAAAAAAAAGATCAGAAATTGAAACAGAACAAAAAATTTATGGAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAAATGAAATGGAGCACCTTCAGCGATGACCAAATTGCTAATACGCTGGTTCGACTGGAGGGTCTCAAATTTTGGGGTTTTTTCAAAAAAAAAATTTGAGAATGGGGTACCTGGACGCTCGATATTATCATTATTAGAATCGATTGGCATTCTTGGCACGTTCTCGAAACAGGAGCACCTTCAGCGATGACCAAATTGCTAATACCTTCGGTCGCTGGTTCGACTGGAGGATCTCAAATTTTGGGGGTTTTTCAAAAAAAAAATTGAGAATGGGGTACCTGGACGCTCGATATTATCATCATTAGAACTGATTGGCATTCTTGGCACGTTTCTCGAAACACTCTAAAAATTTTCTGTGAAAAAATTTCAAAAATCAAAAAATGTAATAATTTTTTGGCAAAAATTACATTTTTGGGTGGTCGGATAGAGGTAAAAAAAAGTGTCAGAACATAGATAAGAAACGGGTTTTCAAGGTCGATTTCATGCTTTTTTCGGTTAAACCGAAAAAAAAGATCAGAAATTGAAACAGAACAAAAAATTTATGGAACAGCTGACAAGAAGAATCAAAGGGACCACTGCCACATTTTTTTTCGTTGTAATGGTTGCGAGAACTGAGCAAAAAAGAGCAAGAGAGAGAGAGAAAAGTTGAGAAATAAAATTTTTTTGTGAAATTTTTTTTCCGAAAATTCCTAAATTTCCAATTTCAGATCTAGAATGTTCCGGCATAAACTTAATATGCTCTAAAAAAGAAGCAAACAATTTTTTCACCGAGAGGAATCGCACCCGGGTCGTCAGGTTGGTAGTGAAAATTTTCGAAAATACCACTGAGCCATTTGTGCATTTTTTTTGAAAATTTGCTCAAAACCGCTTTAAATATAAAGCGAAAAATGACTATTTGGAGAAATGGACAACTAATGATTTGATAGGAAATTCGGTACCAAACAAATTTTATATTTGCCTTACAGTTTTATGTTGATAAGAAAAAATGAGCGAGAGAG</canonical>
            <polymorphic>TTCAAATGAAATGGAGCACCTTCAGCGATGACCAAATTGCTAATACGCTGGTTCGACTGGAGGGTCTCAAATTTTGGGGTTTTTTCAAAAAAAAAATTTGAGAATGGGGTACCTGGACGCTCGATATTATCATTATTAGAATCGATTGGCATTCTTGGCACGTTCTCGAAACAGGAGCACCTTCAGCGATGACCAAATTGCTAATACCTTCGGTCGCTGGTTCGACTGGAGGATCTCAAATTTTGGGGGTTTTTCAAAAAAAAAATTGAGAATGGGGTACCTGGACGCTCGATATTATCATCATTAGAACTGATTGGCATTCTTGGCACGTTTCTCGAAACACTCTAAAAATTTTCTGTGAAAAAATTTCAAAAATCAAAAAATGTAATAATTTTTTGGCAAAAATTACATTTTTGGGTGGTCGGATAGAGGTAAAAAAAAGTGTCAGAACATAGATAAGAAACGGGTTTTCAAGGTCGATTTCATGCTTTTTTCGGTTRAACCGAAAAAAAAGATCAGAAATTGAAACAGAACAAAAAATTTATGGAACAGCTGACAAGAAGAATCAAAGGGACCACTGCCACATTTTTTTTCGTTGTAATGGTTGCGAGAACTGAGCAAAAAAGAGCAAGAGAGAGAGAGAAAAGTTGAGAAATAAAATTTTTTTGTGAAATTTTTTTTCCGAAAATTCCTAAATTTCCAATTTCAGATCTAGAATGTTCCGGCATAAACTTAATATGCTCTAAAAAAGAAGCAAACAATTTTTTCACCGAGAGGAATCGCACCCGGGTCGTCAGGTTGGTAGTGAAAATTTTCGAAAATACCACTGAGCCATTTGTGCATTTTTTTTGAAAATTTGCTCAAAACCGCTTTAAATATAAAGCGAAAAATGACTATTTGGAGAAATGGACAACTAATGATTTGATAGGAAATTCGGTACCAAACAAATTTTATATTTGCCTTACAGTTTTATGTTGATAAGAAAAAATGAGCGAGAGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>498 235 139 128</canonical_bands>
                <polymorphic_bands>733 139 128</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTACATTTTTGGGTGGT</pcr_primer_p1>
		<pcr_primer_p2>TCAACTTTTCTCTCTCTCTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATTACATTTTTGGGTGGTCGGATAGAGGTAAAAAAAAGTGTCAGAACATAGATAAGAAACGGGTTTTCAAGGTCGATTTCATGCTTTTTTCGGTTAAACCGAAAAAAAAGATCAGAAATTGAAACAGAACAAAAAATTTATGGAACAGCTGACAAGAAGAATCAAAGGGACCACTGCCACATTTTTTTTCGTTGTAATGGTTGCGAGAACTGAGCAAAAAAGAGCAAGAGAGAGAGAGAAAAGTTGA</canonical_amplicon>
		<polymorphic_amplicon>AAAATTACATTTTTGGGTGGTCGGATAGAGGTAAAAAAAAGTGTCAGAACATAGATAAGAAACGGGTTTTCAAGGTCGATTTCATGCTTTTTTCGGTTRAACCGAAAAAAAAGATCAGAAATTGAAACAGAACAAAAAATTTATGGAACAGCTGACAAGAAGAATCAAAGGGACCACTGCCACATTTTTTTTCGTTGTAATGGTTGCGAGAACTGAGCAAAAAAGAGCAAGAGAGAGAGAGAAAAGTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38095</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>17347</contig_pos>
        <strand>+</strand>
        <context>CACTGCCACA[C/T]TTTTTTTCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATTTATGGAACAGCTGACAAGAAGAATCAAAGGGACCACTGCCACA</left_flank>
        <right_flank>TTTTTTTCGTTGTAATGGTTGCGAGAACTGAGCAAAAAAGAGCAAGAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAAAAATTTGAGAATGGGGTACCTGGACGCTCGATATTATCATTATTAGAATCGATTGGCATTCTTGGCACGTTCTCGAAACAGGAGCACCTTCAGCGATGACCAAATTGCTAATACCTTCGGTCGCTGGTTCGACTGGAGGATCTCAAATTTTGGGGGTTTTTCAAAAAAAAAATTGAGAATGGGGTACCTGGACGCTCGATATTATCATCATTAGAACTGATTGGCATTCTTGGCACGTTTCTCGAAACACTCTAAAAATTTTCTGTGAAAAAATTTCAAAAATCAAAAAATGTAATAATTTTTTGGCAAAAATTACATTTTTGGGTGGTCGGATAGAGGTAAAAAAAAGTGTCAGAACATAGATAAGAAACGGGTTTTCAAGGTCGATTTCATGCTTTTTTCGGTTAAACCGAAAAAAAAGATCAGAAATTGAAACAGAACAAAAAATTTATGGAACAGCTGACAAGAAGAATCAAAGGGACCACTGCCACATTTTTTTTCGTTGTAATGGTTGCGAGAACTGAGCAAAAAAGAGCAAGAGAGAGAGAGAAAAGTTGAGAAATAAAATTTTTTTGTGAAATTTTTTTTCCGAAAATTCCTAAATTTCCAATTTCAGATCTAGAATGTTCCGGCATAAACTTAATATGCTCTAAAAAAGAAGCAAACAATTTTTTCACCGAGAGGAATCGCACCCGGGTCGTCAGGTTGGTAGTGAAAATTTTCGAAAATACCACTGAGCCATTTGTGCATTTTTTTTGAAAATTTGCTCAAAACCGCTTTAAATATAAAGCGAAAAATGACTATTTGGAGAAATGGACAACTAATGATTTGATAGGAAATTCGGTACCAAACAAATTTTATATTTGCCTTACAGTTTTATGTTGATAAGAAAAAATGAGCGAGAGAGAGAAAAAACGTCAATTCCATCTACAGAACTGATAATACACAAAATTTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAAT</canonical>
            <polymorphic>AAAAAAAAAATTTGAGAATGGGGTACCTGGACGCTCGATATTATCATTATTAGAATCGATTGGCATTCTTGGCACGTTCTCGAAACAGGAGCACCTTCAGCGATGACCAAATTGCTAATACCTTCGGTCGCTGGTTCGACTGGAGGATCTCAAATTTTGGGGGTTTTTCAAAAAAAAAATTGAGAATGGGGTACCTGGACGCTCGATATTATCATCATTAGAACTGATTGGCATTCTTGGCACGTTTCTCGAAACACTCTAAAAATTTTCTGTGAAAAAATTTCAAAAATCAAAAAATGTAATAATTTTTTGGCAAAAATTACATTTTTGGGTGGTCGGATAGAGGTAAAAAAAAGTGTCAGAACATAGATAAGAAACGGGTTTTCAAGGTCGATTTCATGCTTTTTTCGGTTAAACCGAAAAAAAAGATCAGAAATTGAAACAGAACAAAAAATTTATGGAACAGCTGACAAGAAGAATCAAAGGGACCACTGCCACAYTTTTTTTCGTTGTAATGGTTGCGAGAACTGAGCAAAAAAGAGCAAGAGAGAGAGAGAAAAGTTGAGAAATAAAATTTTTTTGTGAAATTTTTTTTCCGAAAATTCCTAAATTTCCAATTTCAGATCTAGAATGTTCCGGCATAAACTTAATATGCTCTAAAAAAGAAGCAAACAATTTTTTCACCGAGAGGAATCGCACCCGGGTCGTCAGGTTGGTAGTGAAAATTTTCGAAAATACCACTGAGCCATTTGTGCATTTTTTTTGAAAATTTGCTCAAAACCGCTTTAAATATAAAGCGAAAAATGACTATTTGGAGAAATGGACAACTAATGATTTGATAGGAAATTCGGTACCAAACAAATTTTATATTTGCCTTACAGTTTTATGTTGATAAGAAAAAATGAGCGAGAGAGAGAAAAAACGTCAATTCCATCTACAGAACTGATAATACACAAAATTTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTACATTTTTGGGTGGT</pcr_primer_p1>
		<pcr_primer_p2>TCAACTTTTCTCTCTCTCTCTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATTACATTTTTGGGTGGTCGGATAGAGGTAAAAAAAAGTGTCAGAACATAGATAAGAAACGGGTTTTCAAGGTCGATTTCATGCTTTTTTCGGTTAAACCGAAAAAAAAGATCAGAAATTGAAACAGAACAAAAAATTTATGGAACAGCTGACAAGAAGAATCAAAGGGACCACTGCCACATTTTTTTTCGTTGTAATGGTTGCGAGAACTGAGCAAAAAAGAGCAAGAGAGAGAGAGAAAAGTTGA</canonical_amplicon>
		<polymorphic_amplicon>AAAATTACATTTTTGGGTGGTCGGATAGAGGTAAAAAAAAGTGTCAGAACATAGATAAGAAACGGGTTTTCAAGGTCGATTTCATGCTTTTTTCGGTTAAACCGAAAAAAAAGATCAGAAATTGAAACAGAACAAAAAATTTATGGAACAGCTGACAAGAAGAATCAAAGGGACCACTGCCACAYTTTTTTTCGTTGTAATGGTTGCGAGAACTGAGCAAAAAAGAGCAAGAGAGAGAGAGAAAAGTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38096</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>17421</contig_pos>
        <strand></strand>
        <context>GAgaaataaa[A/T]tttttttgtg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAACTGAGCAAAAAAGAGCAAGAGAGAGAGAGAAAAGTTGAGAAATAAA</left_flank>
        <right_flank>TTTTTTTGTGAAATTTTTTTTCCGAAAATTCCTAAATTTCCAATTTCAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTCTCGAAACAGGAGCACCTTCAGCGATGACCAAATTGCTAATACCTTCGGTCGCTGGTTCGACTGGAGGATCTCAAATTTTGGGGGTTTTTCAAAAAAAAAATTGAGAATGGGGTACCTGGACGCTCGATATTATCATCATTAGAACTGATTGGCATTCTTGGCACGTTTCTCGAAACACTCTAAAAATTTTCTGTGAAAAAATTTCAAAAATCAAAAAATGTAATAATTTTTTGGCAAAAATTACATTTTTGGGTGGTCGGATAGAGGTAAAAAAAAGTGTCAGAACATAGATAAGAAACGGGTTTTCAAGGTCGATTTCATGCTTTTTTCGGTTAAACCGAAAAAAAAGATCAGAAATTGAAACAGAACAAAAAATTTATGGAACAGCTGACAAGAAGAATCAAAGGGACCACTGCCACATTTTTTTTCGTTGTAATGGTTGCGAGAACTGAGCAAAAAAGAGCAAGAGAGAGAGAGAAAAGTTGAGAAATAAAATTTTTTTGTGAAATTTTTTTTCCGAAAATTCCTAAATTTCCAATTTCAGATCTAGAATGTTCCGGCATAAACTTAATATGCTCTAAAAAAGAAGCAAACAATTTTTTCACCGAGAGGAATCGCACCCGGGTCGTCAGGTTGGTAGTGAAAATTTTCGAAAATACCACTGAGCCATTTGTGCATTTTTTTTGAAAATTTGCTCAAAACCGCTTTAAATATAAAGCGAAAAATGACTATTTGGAGAAATGGACAACTAATGATTTGATAGGAAATTCGGTACCAAACAAATTTTATATTTGCCTTACAGTTTTATGTTGATAAGAAAAAATGAGCGAGAGAGAGAAAAAACGTCAATTCCATCTACAGAACTGATAATACACAAAATTTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAAATTCCTTCATCGAGAAAAACG</canonical>
            <polymorphic>CGTTCTCGAAACAGGAGCACCTTCAGCGATGACCAAATTGCTAATACCTTCGGTCGCTGGTTCGACTGGAGGATCTCAAATTTTGGGGGTTTTTCAAAAAAAAAATTGAGAATGGGGTACCTGGACGCTCGATATTATCATCATTAGAACTGATTGGCATTCTTGGCACGTTTCTCGAAACACTCTAAAAATTTTCTGTGAAAAAATTTCAAAAATCAAAAAATGTAATAATTTTTTGGCAAAAATTACATTTTTGGGTGGTCGGATAGAGGTAAAAAAAAGTGTCAGAACATAGATAAGAAACGGGTTTTCAAGGTCGATTTCATGCTTTTTTCGGTTAAACCGAAAAAAAAGATCAGAAATTGAAACAGAACAAAAAATTTATGGAACAGCTGACAAGAAGAATCAAAGGGACCACTGCCACATTTTTTTTCGTTGTAATGGTTGCGAGAACTGAGCAAAAAAGAGCAAGAGAGAGAGAGAAAAGTTGAGAAATAAAWTTTTTTTGTGAAATTTTTTTTCCGAAAATTCCTAAATTTCCAATTTCAGATCTAGAATGTTCCGGCATAAACTTAATATGCTCTAAAAAAGAAGCAAACAATTTTTTCACCGAGAGGAATCGCACCCGGGTCGTCAGGTTGGTAGTGAAAATTTTCGAAAATACCACTGAGCCATTTGTGCATTTTTTTTGAAAATTTGCTCAAAACCGCTTTAAATATAAAGCGAAAAATGACTATTTGGAGAAATGGACAACTAATGATTTGATAGGAAATTCGGTACCAAACAAATTTTATATTTGCCTTACAGTTTTATGTTGATAAGAAAAAATGAGCGAGAGAGAGAAAAAACGTCAATTCCATCTACAGAACTGATAATACACAAAATTTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAAATTCCTTCATCGAGAAAAACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>174 120 115 111 96 78 77 61 44 23 22 16 15 15 13 12 8</canonical_bands>
                <polymorphic_bands>174 133 115 111 96 78 77 61 44 23 22 16 15 15 12 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>120 117 86 77 66 61 58 50 44 43 35 30 25 25 23 22 18 16 15 15 14 13 12 8 7</canonical_bands>
                <polymorphic_bands>133 117 86 77 66 61 58 50 44 43 35 30 25 25 23 22 18 16 15 15 14 12 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTGTAATGGTTGCGAGAAC</pcr_primer_p1>
		<pcr_primer_p2>CATTTCTCCAAATAGTCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>314</pcr_amplicon_size>
		<canonical_amplicon>GTTGTAATGGTTGCGAGAACTGAGCAAAAAAGAGCAAGAGAGAGAGAGAAAAGTTGAGAAATAAAATTTTTTTGTGAAATTTTTTTTCCGAAAATTCCTAAATTTCCAATTTCAGATCTAGAATGTTCCGGCATAAACTTAATATGCTCTAAAAAAGAAGCAAACAATTTTTTCACCGAGAGGAATCGCACCCGGGTCGTCAGGTTGGTAGTGAAAATTTTCGAAAATACCACTGAGCCATTTGTGCATTTTTTTTGAAAATTTGCTCAAAACCGCTTTAAATATAAAGCGAAAAATGACTATTTGGAGAAATG</canonical_amplicon>
		<polymorphic_amplicon>GTTGTAATGGTTGCGAGAACTGAGCAAAAAAGAGCAAGAGAGAGAGAGAAAAGTTGAGAAATAAAWTTTTTTTGTGAAATTTTTTTTCCGAAAATTCCTAAATTTCCAATTTCAGATCTAGAATGTTCCGGCATAAACTTAATATGCTCTAAAAAAGAAGCAAACAATTTTTTCACCGAGAGGAATCGCACCCGGGTCGTCAGGTTGGTAGTGAAAATTTTCGAAAATACCACTGAGCCATTTGTGCATTTTTTTTGAAAATTTGCTCAAAACCGCTTTAAATATAAAGCGAAAAATGACTATTTGGAGAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38097</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>17520</contig_pos>
        <strand></strand>
        <context>aagaagcaaa[C/A]aattttttca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GATCTAGAATGTTCCGGCATAAACTTAATATGCTCTAAAAAAGAAGCAAA</left_flank>
        <right_flank>AATTTTTTCACCGAGAGGAATCGCACCCGGGTCGTCAGGTTGGTAGTGAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAATTGAGAATGGGGTACCTGGACGCTCGATATTATCATCATTAGAACTGATTGGCATTCTTGGCACGTTTCTCGAAACACTCTAAAAATTTTCTGTGAAAAAATTTCAAAAATCAAAAAATGTAATAATTTTTTGGCAAAAATTACATTTTTGGGTGGTCGGATAGAGGTAAAAAAAAGTGTCAGAACATAGATAAGAAACGGGTTTTCAAGGTCGATTTCATGCTTTTTTCGGTTAAACCGAAAAAAAAGATCAGAAATTGAAACAGAACAAAAAATTTATGGAACAGCTGACAAGAAGAATCAAAGGGACCACTGCCACATTTTTTTTCGTTGTAATGGTTGCGAGAACTGAGCAAAAAAGAGCAAGAGAGAGAGAGAAAAGTTGAGAAATAAAATTTTTTTGTGAAATTTTTTTTCCGAAAATTCCTAAATTTCCAATTTCAGATCTAGAATGTTCCGGCATAAACTTAATATGCTCTAAAAAAGAAGCAAACAATTTTTTCACCGAGAGGAATCGCACCCGGGTCGTCAGGTTGGTAGTGAAAATTTTCGAAAATACCACTGAGCCATTTGTGCATTTTTTTTGAAAATTTGCTCAAAACCGCTTTAAATATAAAGCGAAAAATGACTATTTGGAGAAATGGACAACTAATGATTTGATAGGAAATTCGGTACCAAACAAATTTTATATTTGCCTTACAGTTTTATGTTGATAAGAAAAAATGAGCGAGAGAGAGAAAAAACGTCAATTCCATCTACAGAACTGATAATACACAAAATTTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAAATTCCTTCATCGAGAAAAACGCATCGAAAAATACGCTGAAAGCCCTTAGGGACGAGGTTTTTTTTAGGCCGCCCGGTGAGTAAAAGCGCGCGAATTCAAATTTTTAAAATTTTTTCGCTC</canonical>
            <polymorphic>AAAAAATTGAGAATGGGGTACCTGGACGCTCGATATTATCATCATTAGAACTGATTGGCATTCTTGGCACGTTTCTCGAAACACTCTAAAAATTTTCTGTGAAAAAATTTCAAAAATCAAAAAATGTAATAATTTTTTGGCAAAAATTACATTTTTGGGTGGTCGGATAGAGGTAAAAAAAAGTGTCAGAACATAGATAAGAAACGGGTTTTCAAGGTCGATTTCATGCTTTTTTCGGTTAAACCGAAAAAAAAGATCAGAAATTGAAACAGAACAAAAAATTTATGGAACAGCTGACAAGAAGAATCAAAGGGACCACTGCCACATTTTTTTTCGTTGTAATGGTTGCGAGAACTGAGCAAAAAAGAGCAAGAGAGAGAGAGAAAAGTTGAGAAATAAAATTTTTTTGTGAAATTTTTTTTCCGAAAATTCCTAAATTTCCAATTTCAGATCTAGAATGTTCCGGCATAAACTTAATATGCTCTAAAAAAGAAGCAAAMAATTTTTTCACCGAGAGGAATCGCACCCGGGTCGTCAGGTTGGTAGTGAAAATTTTCGAAAATACCACTGAGCCATTTGTGCATTTTTTTTGAAAATTTGCTCAAAACCGCTTTAAATATAAAGCGAAAAATGACTATTTGGAGAAATGGACAACTAATGATTTGATAGGAAATTCGGTACCAAACAAATTTTATATTTGCCTTACAGTTTTATGTTGATAAGAAAAAATGAGCGAGAGAGAGAAAAAACGTCAATTCCATCTACAGAACTGATAATACACAAAATTTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAAATTCCTTCATCGAGAAAAACGCATCGAAAAATACGCTGAAAGCCCTTAGGGACGAGGTTTTTTTTAGGCCGCCCGGTGAGTAAAAGCGCGCGAATTCAAATTTTTAAAATTTTTTCGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCAAGAGAGAGAGAGAAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>CATTTCTCCAAATAGTCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>282</pcr_amplicon_size>
		<canonical_amplicon>AGCAAGAGAGAGAGAGAAAAGTTGAGAAATAAAATTTTTTTGTGAAATTTTTTTTCCGAAAATTCCTAAATTTCCAATTTCAGATCTAGAATGTTCCGGCATAAACTTAATATGCTCTAAAAAAGAAGCAAACAATTTTTTCACCGAGAGGAATCGCACCCGGGTCGTCAGGTTGGTAGTGAAAATTTTCGAAAATACCACTGAGCCATTTGTGCATTTTTTTTGAAAATTTGCTCAAAACCGCTTTAAATATAAAGCGAAAAATGACTATTTGGAGAAATG</canonical_amplicon>
		<polymorphic_amplicon>AGCAAGAGAGAGAGAGAAAAGTTGAGAAATAAAATTTTTTTGTGAAATTTTTTTTCCGAAAATTCCTAAATTTCCAATTTCAGATCTAGAATGTTCCGGCATAAACTTAATATGCTCTAAAAAAGAAGCAAAMAATTTTTTCACCGAGAGGAATCGCACCCGGGTCGTCAGGTTGGTAGTGAAAATTTTCGAAAATACCACTGAGCCATTTGTGCATTTTTTTTGAAAATTTGCTCAAAACCGCTTTAAATATAAAGCGAAAAATGACTATTTGGAGAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38098</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>17611</contig_pos>
        <strand></strand>
        <context>gcattttttt[T/G]gaaaatttgc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TGGTAGTGAAAATTTTCGAAAATACCACTGAGCCATTTGTGCATTTTTTT</left_flank>
        <right_flank>GAAAATTTGCTCAAAACCGCTTTAAATATAAAGCGAAAAATGACTATTTG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTCTGTGAAAAAATTTCAAAAATCAAAAAATGTAATAATTTTTTGGCAAAAATTACATTTTTGGGTGGTCGGATAGAGGTAAAAAAAAGTGTCAGAACATAGATAAGAAACGGGTTTTCAAGGTCGATTTCATGCTTTTTTCGGTTAAACCGAAAAAAAAGATCAGAAATTGAAACAGAACAAAAAATTTATGGAACAGCTGACAAGAAGAATCAAAGGGACCACTGCCACATTTTTTTTCGTTGTAATGGTTGCGAGAACTGAGCAAAAAAGAGCAAGAGAGAGAGAGAAAAGTTGAGAAATAAAATTTTTTTGTGAAATTTTTTTTCCGAAAATTCCTAAATTTCCAATTTCAGATCTAGAATGTTCCGGCATAAACTTAATATGCTCTAAAAAAGAAGCAAACAATTTTTTCACCGAGAGGAATCGCACCCGGGTCGTCAGGTTGGTAGTGAAAATTTTCGAAAATACCACTGAGCCATTTGTGCATTTTTTTTGAAAATTTGCTCAAAACCGCTTTAAATATAAAGCGAAAAATGACTATTTGGAGAAATGGACAACTAATGATTTGATAGGAAATTCGGTACCAAACAAATTTTATATTTGCCTTACAGTTTTATGTTGATAAGAAAAAATGAGCGAGAGAGAGAAAAAACGTCAATTCCATCTACAGAACTGATAATACACAAAATTTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAAATTCCTTCATCGAGAAAAACGCATCGAAAAATACGCTGAAAGCCCTTAGGGACGAGGTTTTTTTTAGGCCGCCCGGTGAGTAAAAGCGCGCGAATTCAAATTTTTAAAATTTTTTCGCTCGTTTTCACTTTTTTCGGTTTTTTCAAGAGTTTTCCAGGTTTTTGTCAATTTTTCTTCCAGATATATCGGAACATTTGACGAAAAACAGCTT</canonical>
            <polymorphic>ATTTTCTGTGAAAAAATTTCAAAAATCAAAAAATGTAATAATTTTTTGGCAAAAATTACATTTTTGGGTGGTCGGATAGAGGTAAAAAAAAGTGTCAGAACATAGATAAGAAACGGGTTTTCAAGGTCGATTTCATGCTTTTTTCGGTTAAACCGAAAAAAAAGATCAGAAATTGAAACAGAACAAAAAATTTATGGAACAGCTGACAAGAAGAATCAAAGGGACCACTGCCACATTTTTTTTCGTTGTAATGGTTGCGAGAACTGAGCAAAAAAGAGCAAGAGAGAGAGAGAAAAGTTGAGAAATAAAATTTTTTTGTGAAATTTTTTTTCCGAAAATTCCTAAATTTCCAATTTCAGATCTAGAATGTTCCGGCATAAACTTAATATGCTCTAAAAAAGAAGCAAACAATTTTTTCACCGAGAGGAATCGCACCCGGGTCGTCAGGTTGGTAGTGAAAATTTTCGAAAATACCACTGAGCCATTTGTGCATTTTTTTKGAAAATTTGCTCAAAACCGCTTTAAATATAAAGCGAAAAATGACTATTTGGAGAAATGGACAACTAATGATTTGATAGGAAATTCGGTACCAAACAAATTTTATATTTGCCTTACAGTTTTATGTTGATAAGAAAAAATGAGCGAGAGAGAGAAAAAACGTCAATTCCATCTACAGAACTGATAATACACAAAATTTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAAATTCCTTCATCGAGAAAAACGCATCGAAAAATACGCTGAAAGCCCTTAGGGACGAGGTTTTTTTTAGGCCGCCCGGTGAGTAAAAGCGCGCGAATTCAAATTTTTAAAATTTTTTCGCTCGTTTTCACTTTTTTCGGTTTTTTCAAGAGTTTTCCAGGTTTTTGTCAATTTTTCTTCCAGATATATCGGAACATTTGACGAAAAACAGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCAAGAGAGAGAGAGAAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>CATTTCTCCAAATAGTCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>282</pcr_amplicon_size>
		<canonical_amplicon>AGCAAGAGAGAGAGAGAAAAGTTGAGAAATAAAATTTTTTTGTGAAATTTTTTTTCCGAAAATTCCTAAATTTCCAATTTCAGATCTAGAATGTTCCGGCATAAACTTAATATGCTCTAAAAAAGAAGCAAACAATTTTTTCACCGAGAGGAATCGCACCCGGGTCGTCAGGTTGGTAGTGAAAATTTTCGAAAATACCACTGAGCCATTTGTGCATTTTTTTTGAAAATTTGCTCAAAACCGCTTTAAATATAAAGCGAAAAATGACTATTTGGAGAAATG</canonical_amplicon>
		<polymorphic_amplicon>AGCAAGAGAGAGAGAGAAAAGTTGAGAAATAAAATTTTTTTGTGAAATTTTTTTTCCGAAAATTCCTAAATTTCCAATTTCAGATCTAGAATGTTCCGGCATAAACTTAATATGCTCTAAAAAAGAAGCAAACAATTTTTTCACCGAGAGGAATCGCACCCGGGTCGTCAGGTTGGTAGTGAAAATTTTCGAAAATACCACTGAGCCATTTGTGCATTTTTTTKGAAAATTTGCTCAAAACCGCTTTAAATATAAAGCGAAAAATGACTATTTGGAGAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38099</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>19667</contig_pos>
        <strand>+</strand>
        <context>CCCCAACAGA[G/T]ATGAGCGGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCTCCTAGTTTTCATTCTCTCTTTCTGTTGACCCATTTATCCCCAACAGA</left_flank>
        <right_flank>ATGAGCGGAATTCCTTATTCCTGATTATTTCTCATTCTACCGGATAATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATTCCCAGTGCTTCGTGGAAATCGATGAAATCTGGTACAAAGAAATGTGGACTTTCGCCAAGTCTGTCAAATTGAATGTGAAAAACACACATTTCGTCCCAGTAATGACTGCCATGAACGCGAACCTCTACAAAATCCCATTGATTATATAGTTCAGGCAAGAGTCTACATTTGTCATTCGTTTTTTTTTTCATTTTTAGTTATTTTTCAGGGACCTCCAAGCACCAACTGCGACTATCACGTGCTATTGGAGCCATAACTGTTTGCCCAGCACGACGAACTTCATTTGAAAAGCGGTGATGGTGGTGACAATGAATCACAGGTTGAACTTTAGATTTTTGCGAGATGGAAATTCGATATTTCCAAAAGCCCCCATATTTCAAAATCATTTTTTCAGCGTTCTTCTTCTTCTTCAAAATAATTCTGAATGATGAAGAAGAACACGCAGCTCCTAGTTTTCATTCTCTCTTTCTGTTGACCCATTTATCCCCAACAGAGATGAGCGGAATTCCTTATTCCTGATTATTTCTCATTCTACCGGATAATTCGAAAATTTTCTATTTCAACACATACAATTAGAGTAATGTTTTCTAAATCTGATTGTTTTTCCGAATTATTTGATTTCCTGATTCCTTATTCCTTCTTCCGGATTTTCCAAATTTGCATTCCACTCATCCCCAATATCATCGTCTCCTGTATCTCCTTACTTTTTTGACAGCTTGGTGAATTTCGTGTTATTAAACAAAGTTGCACGGACACTCCGTTGTCCGTACAGAACAATTTCCCTGTCCGTGTAACTCGCTGAAATAAATGATTCTATCTTTTTTGAAACATTTTCTTTTCAGGTGATTGTTTTAAAGGATCTCAACTAACTCAAAAATCAACTGAACTCGATAAACTTTATTCATTAAATTTCCCACATTTAGAGCTTCAAAATGAGTATAAACACGACTAGGCTCCGCCCATTTTGATTTTCCCACTTTAAACGCGCACAGGGG</canonical>
            <polymorphic>CGATTCCCAGTGCTTCGTGGAAATCGATGAAATCTGGTACAAAGAAATGTGGACTTTCGCCAAGTCTGTCAAATTGAATGTGAAAAACACACATTTCGTCCCAGTAATGACTGCCATGAACGCGAACCTCTACAAAATCCCATTGATTATATAGTTCAGGCAAGAGTCTACATTTGTCATTCGTTTTTTTTTTCATTTTTAGTTATTTTTCAGGGACCTCCAAGCACCAACTGCGACTATCACGTGCTATTGGAGCCATAACTGTTTGCCCAGCACGACGAACTTCATTTGAAAAGCGGTGATGGTGGTGACAATGAATCACAGGTTGAACTTTAGATTTTTGCGAGATGGAAATTCGATATTTCCAAAAGCCCCCATATTTCAAAATCATTTTTTCAGCGTTCTTCTTCTTCTTCAAAATAATTCTGAATGATGAAGAAGAACACGCAGCTCCTAGTTTTCATTCTCTCTTTCTGTTGACCCATTTATCCCCAACAGAKATGAGCGGAATTCCTTATTCCTGATTATTTCTCATTCTACCGGATAATTCGAAAATTTTCTATTTCAACACATACAATTAGAGTAATGTTTTCTAAATCTGATTGTTTTTCCGAATTATTTGATTTCCTGATTCCTTATTCCTTCTTCCGGATTTTCCAAATTTGCATTCCACTCATCCCCAATATCATCGTCTCCTGTATCTCCTTACTTTTTTGACAGCTTGGTGAATTTCGTGTTATTAAACAAAGTTGCACGGACACTCCGTTGTCCGTACAGAACAATTTCCCTGTCCGTGTAACTCGCTGAAATAAATGATTCTATCTTTTTTGAAACATTTTCTTTTCAGGTGATTGTTTTAAAGGATCTCAACTAACTCAAAAATCAACTGAACTCGATAAACTTTATTCATTAAATTTCCCACATTTAGAGCTTCAAAATGAGTATAAACACGACTAGGCTCCGCCCATTTTGATTTTCCCACTTTAAACGCGCACAGGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGAATCACAGGTTGAACTTTA</pcr_primer_p1>
		<pcr_primer_p2>AATTTTCGAATTATCCGGTAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATGAATCACAGGTTGAACTTTAGATTTTTGCGAGATGGAAATTCGATATTTCCAAAAGCCCCCATATTTCAAAATCATTTTTTCAGCGTTCTTCTTCTTCTTCAAAATAATTCTGAATGATGAAGAAGAACACGCAGCTCCTAGTTTTCATTCTCTCTTTCTGTTGACCCATTTATCCCCAACAGAGATGAGCGGAATTCCTTATTCCTGATTATTTCTCATTCTACCGGATAATTCGAAAATT</canonical_amplicon>
		<polymorphic_amplicon>AATGAATCACAGGTTGAACTTTAGATTTTTGCGAGATGGAAATTCGATATTTCCAAAAGCCCCCATATTTCAAAATCATTTTTTCAGCGTTCTTCTTCTTCTTCAAAATAATTCTGAATGATGAAGAAGAACACGCAGCTCCTAGTTTTCATTCTCTCTTTCTGTTGACCCATTTATCCCCAACAGAKATGAGCGGAATTCCTTATTCCTGATTATTTCTCATTCTACCGGATAATTCGAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38100</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>19725</contig_pos>
        <strand>+</strand>
        <context>TTCGAAAATT[A/T]TCTATTTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAATTCCTTATTCCTGATTATTTCTCATTCTACCGGATAATTCGAAAATT</left_flank>
        <right_flank>TCTATTTCAACACATACAATTAGAGTAATGTTTTCTAAATCTGATTGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCAAGTCTGTCAAATTGAATGTGAAAAACACACATTTCGTCCCAGTAATGACTGCCATGAACGCGAACCTCTACAAAATCCCATTGATTATATAGTTCAGGCAAGAGTCTACATTTGTCATTCGTTTTTTTTTTCATTTTTAGTTATTTTTCAGGGACCTCCAAGCACCAACTGCGACTATCACGTGCTATTGGAGCCATAACTGTTTGCCCAGCACGACGAACTTCATTTGAAAAGCGGTGATGGTGGTGACAATGAATCACAGGTTGAACTTTAGATTTTTGCGAGATGGAAATTCGATATTTCCAAAAGCCCCCATATTTCAAAATCATTTTTTCAGCGTTCTTCTTCTTCTTCAAAATAATTCTGAATGATGAAGAAGAACACGCAGCTCCTAGTTTTCATTCTCTCTTTCTGTTGACCCATTTATCCCCAACAGAGATGAGCGGAATTCCTTATTCCTGATTATTTCTCATTCTACCGGATAATTCGAAAATTTTCTATTTCAACACATACAATTAGAGTAATGTTTTCTAAATCTGATTGTTTTTCCGAATTATTTGATTTCCTGATTCCTTATTCCTTCTTCCGGATTTTCCAAATTTGCATTCCACTCATCCCCAATATCATCGTCTCCTGTATCTCCTTACTTTTTTGACAGCTTGGTGAATTTCGTGTTATTAAACAAAGTTGCACGGACACTCCGTTGTCCGTACAGAACAATTTCCCTGTCCGTGTAACTCGCTGAAATAAATGATTCTATCTTTTTTGAAACATTTTCTTTTCAGGTGATTGTTTTAAAGGATCTCAACTAACTCAAAAATCAACTGAACTCGATAAACTTTATTCATTAAATTTCCCACATTTAGAGCTTCAAAATGAGTATAAACACGACTAGGCTCCGCCCATTTTGATTTTCCCACTTTAAACGCGCACAGGGGGTCCAAAATTTGAAATTTGAAGAAAGTAGCTCATGATTATACTCATTTTGAAGCTCTA</canonical>
            <polymorphic>GCCAAGTCTGTCAAATTGAATGTGAAAAACACACATTTCGTCCCAGTAATGACTGCCATGAACGCGAACCTCTACAAAATCCCATTGATTATATAGTTCAGGCAAGAGTCTACATTTGTCATTCGTTTTTTTTTTCATTTTTAGTTATTTTTCAGGGACCTCCAAGCACCAACTGCGACTATCACGTGCTATTGGAGCCATAACTGTTTGCCCAGCACGACGAACTTCATTTGAAAAGCGGTGATGGTGGTGACAATGAATCACAGGTTGAACTTTAGATTTTTGCGAGATGGAAATTCGATATTTCCAAAAGCCCCCATATTTCAAAATCATTTTTTCAGCGTTCTTCTTCTTCTTCAAAATAATTCTGAATGATGAAGAAGAACACGCAGCTCCTAGTTTTCATTCTCTCTTTCTGTTGACCCATTTATCCCCAACAGAGATGAGCGGAATTCCTTATTCCTGATTATTTCTCATTCTACCGGATAATTCGAAAATTWTCTATTTCAACACATACAATTAGAGTAATGTTTTCTAAATCTGATTGTTTTTCCGAATTATTTGATTTCCTGATTCCTTATTCCTTCTTCCGGATTTTCCAAATTTGCATTCCACTCATCCCCAATATCATCGTCTCCTGTATCTCCTTACTTTTTTGACAGCTTGGTGAATTTCGTGTTATTAAACAAAGTTGCACGGACACTCCGTTGTCCGTACAGAACAATTTCCCTGTCCGTGTAACTCGCTGAAATAAATGATTCTATCTTTTTTGAAACATTTTCTTTTCAGGTGATTGTTTTAAAGGATCTCAACTAACTCAAAAATCAACTGAACTCGATAAACTTTATTCATTAAATTTCCCACATTTAGAGCTTCAAAATGAGTATAAACACGACTAGGCTCCGCCCATTTTGATTTTCCCACTTTAAACGCGCACAGGGGGTCCAAAATTTGAAATTTGAAGAAAGTAGCTCATGATTATACTCATTTTGAAGCTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>294 185 156 106 94 68 45 45 7</canonical_bands>
                <polymorphic_bands>294 185 156 151 94 68 45 7</polymorphic_bands>
            </assay>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>497 277 226</canonical_bands>
                <polymorphic_bands>723 277</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTTTCTGTTGACCCATTTAT</pcr_primer_p1>
		<pcr_primer_p2>AGTAAGGAGATACAGGAGACGAT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTCTTTCTGTTGACCCATTTATCCCCAACAGAGATGAGCGGAATTCCTTATTCCTGATTATTTCTCATTCTACCGGATAATTCGAAAATTTTCTATTTCAACACATACAATTAGAGTAATGTTTTCTAAATCTGATTGTTTTTCCGAATTATTTGATTTCCTGATTCCTTATTCCTTCTTCCGGATTTTCCAAATTTGCATTCCACTCATCCCCAATATCATCGTCTCCTGTATCTCCTTACT</canonical_amplicon>
		<polymorphic_amplicon>CTCTTTCTGTTGACCCATTTATCCCCAACAGAGATGAGCGGAATTCCTTATTCCTGATTATTTCTCATTCTACCGGATAATTCGAAAATTWTCTATTTCAACACATACAATTAGAGTAATGTTTTCTAAATCTGATTGTTTTTCCGAATTATTTGATTTCCTGATTCCTTATTCCTTCTTCCGGATTTTCCAAATTTGCATTCCACTCATCCCCAATATCATCGTCTCCTGTATCTCCTTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38101</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>28563</contig_pos>
        <strand>+</strand>
        <context>tttgagatag[C/T]tgatattttc</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAATATCCAAATTTGACAGAGTTATGACCGAAAATAATTTTGAGATAG</left_flank>
        <right_flank>TGATATTTTCTAAGAAATTTTTTTTTTTTGAAATTTTGAAAATTTTTCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATCAGGAAAACTTCTTTTTTTTTGGTGTCTGGCCTCCTTTAAAGGCGCATAGGGTGTCCGAAATTTGAAAATCGAGGAAAGTAGGTCATGATTATACTCATTTTGAAGCTCGAAATGTGACAAACTCAGAAATAATTAATAGATGTTTGAAAAATAAATAATAACGAAGCTTGCTTACATAACACTTTTTTGGGAATATTCCAAAAAAACTTGTGTTGATCATAACTTTCTCAATTTTCAGAATTTCGAGCTAAAACTTAATTTATTGAGTTTATGGTGTGAAGAGCTTTGAAATGAGTATAAACACGAATAGGCTCTGCTCATTTTGATTTTCCCACTTTAAAGGCGCATAGGGGGACCGAAATTTGAAATTTAAGGAAAGTGGGTCATAATTATACTCATTTTGAAGCTCTAGACGTGAGAAATATGAAAATGAAGCTTTCAGCTGAAAATATCCAAATTTGACAGAGTTATGACCGAAAATAATTTTGAGATAGGTGATATTTTCTAAGAAATTTTTTTTTTTTGAAATTTTGAAAATTTTTCTAGATTTTTAAAAGATTTTCACATTAATAGTTGGATTTTCAGACTTAGAACTTTTTAAATTTTTTGAAAAATATTTTTCCCTTTTTGGTGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCT</canonical>
            <polymorphic>ATATCAGGAAAACTTCTTTTTTTTTGGTGTCTGGCCTCCTTTAAAGGCGCATAGGGTGTCCGAAATTTGAAAATCGAGGAAAGTAGGTCATGATTATACTCATTTTGAAGCTCGAAATGTGACAAACTCAGAAATAATTAATAGATGTTTGAAAAATAAATAATAACGAAGCTTGCTTACATAACACTTTTTTGGGAATATTCCAAAAAAACTTGTGTTGATCATAACTTTCTCAATTTTCAGAATTTCGAGCTAAAACTTAATTTATTGAGTTTATGGTGTGAAGAGCTTTGAAATGAGTATAAACACGAATAGGCTCTGCTCATTTTGATTTTCCCACTTTAAAGGCGCATAGGGGGACCGAAATTTGAAATTTAAGGAAAGTGGGTCATAATTATACTCATTTTGAAGCTCTAGACGTGAGAAATATGAAAATGAAGCTTTCAGCTGAAAATATCCAAATTTGACAGAGTTATGACCGAAAATAATTTTGAGATAGYTGATATTTTCTAAGAAATTTTTTTTTTTTGAAATTTTGAAAATTTTTCTAGATTTTTAAAAGATTTTCACATTAATAGTTGGATTTTCAGACTTAGAACTTTTTAAATTTTTTGAAAAATATTTTTCCCTTTTTGGTGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>144 92 80 69 67 65 64 63 49 47 36 31 31 29 29 28 25 19 14 8 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>147 144 92 69 65 64 63 49 47 36 31 31 29 29 28 25 19 14 8 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAAAATATCAGGAAAACTTCTT</pcr_primer_p1>
		<pcr_primer_p2>AATCCAACTATTAATGTGAAAATCT</pcr_primer_p2>
		<pcr_amplicon_size>590</pcr_amplicon_size>
		<canonical_amplicon>GGTGATATTTTCTAAGAAATTTTTTTTTTTTGAAATTTTGAAAATTTTTCTAGATTTTTAAAAGATTTTCACATTAATAGTTGGATT</canonical_amplicon>
		<polymorphic_amplicon>GYTGATATTTTCTAAGAAATTTTTTTTTTTTGAAATTTTGAAAATTTTTCTAGATTTTTAAAAGATTTTCACATTAATAGTTGGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38102</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>28612</contig_pos>
        <strand></strand>
        <context>AAAATTTTTC[T/C]AGATTTTTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGTGATATTTTCTAAGAAATTTTTTTTTTTTGAAATTTTGAAAATTTTTC</left_flank>
        <right_flank>AGATTTTTAAAAGATTTTCACATTAATAGTTGGATTTTCAGACTTAGAAC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATAGGGTGTCCGAAATTTGAAAATCGAGGAAAGTAGGTCATGATTATACTCATTTTGAAGCTCGAAATGTGACAAACTCAGAAATAATTAATAGATGTTTGAAAAATAAATAATAACGAAGCTTGCTTACATAACACTTTTTTGGGAATATTCCAAAAAAACTTGTGTTGATCATAACTTTCTCAATTTTCAGAATTTCGAGCTAAAACTTAATTTATTGAGTTTATGGTGTGAAGAGCTTTGAAATGAGTATAAACACGAATAGGCTCTGCTCATTTTGATTTTCCCACTTTAAAGGCGCATAGGGGGACCGAAATTTGAAATTTAAGGAAAGTGGGTCATAATTATACTCATTTTGAAGCTCTAGACGTGAGAAATATGAAAATGAAGCTTTCAGCTGAAAATATCCAAATTTGACAGAGTTATGACCGAAAATAATTTTGAGATAGGTGATATTTTCTAAGAAATTTTTTTTTTTTGAAATTTTGAAAATTTTTCTAGATTTTTAAAAGATTTTCACATTAATAGTTGGATTTTCAGACTTAGAACTTTTTAAATTTTTTGAAAAATATTTTTCCCTTTTTGGTGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAA</canonical>
            <polymorphic>CATAGGGTGTCCGAAATTTGAAAATCGAGGAAAGTAGGTCATGATTATACTCATTTTGAAGCTCGAAATGTGACAAACTCAGAAATAATTAATAGATGTTTGAAAAATAAATAATAACGAAGCTTGCTTACATAACACTTTTTTGGGAATATTCCAAAAAAACTTGTGTTGATCATAACTTTCTCAATTTTCAGAATTTCGAGCTAAAACTTAATTTATTGAGTTTATGGTGTGAAGAGCTTTGAAATGAGTATAAACACGAATAGGCTCTGCTCATTTTGATTTTCCCACTTTAAAGGCGCATAGGGGGACCGAAATTTGAAATTTAAGGAAAGTGGGTCATAATTATACTCATTTTGAAGCTCTAGACGTGAGAAATATGAAAATGAAGCTTTCAGCTGAAAATATCCAAATTTGACAGAGTTATGACCGAAAATAATTTTGAGATAGGTGATATTTTCTAAGAAATTTTTTTTTTTTGAAATTTTGAAAATTTTTCYAGATTTTTAAAAGATTTTCACATTAATAGTTGGATTTTCAGACTTAGAACTTTTTAAATTTTTTGAAAAATATTTTTCCCTTTTTGGTGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>365 322 179 134</canonical_bands>
                <polymorphic_bands>456 365 179</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>364 322 180 134</canonical_bands>
                <polymorphic_bands>456 364 180</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAAAATATCAGGAAAACTTCTT</pcr_primer_p1>
		<pcr_primer_p2>GACACCAAAAAGGGAAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>645</pcr_amplicon_size>
		<canonical_amplicon>CTAGATTTTTAAAAGATTTTCACATTAATAGTTGGATTTTCAGACTTAGAACTTTTTAAATTTTTTGAAAAATATTTTTCCCTTTTTGGTGTC</canonical_amplicon>
		<polymorphic_amplicon>CYAGATTTTTAAAAGATTTTCACATTAATAGTTGGATTTTCAGACTTAGAACTTTTTAAATTTTTTGAAAAATATTTTTCCCTTTTTGGTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38103</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>29002</contig_pos>
        <strand>+</strand>
        <context>TGGATGGACA[A/C]GTCTTGTTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACA</left_flank>
        <right_flank>GTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTTCAGCTGAAAATATCCAAATTTGACAGAGTTATGACCGAAAATAATTTTGAGATAGGTGATATTTTCTAAGAAATTTTTTTTTTTTGAAATTTTGAAAATTTTTCTAGATTTTTAAAAGATTTTCACATTAATAGTTGGATTTTCAGACTTAGAACTTTTTAAATTTTTTGAAAAATATTTTTCCCTTTTTGGTGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAGGATTTTACATTTTTTTGAAAGTAGGAAAAAATTGACAGATTCAGGATCAAAATAAAACGTTTTGAAAAAAATCAAAAAAAGTTTTTTGATCATAACTTTCTCAATTTTCAGAATTTTCTGCTGGAACTCAATTTTTTGAATTTGAAACGTTAAGAGCTTTGAAATGAGTATAAACACGACTA</canonical>
            <polymorphic>GCTTTCAGCTGAAAATATCCAAATTTGACAGAGTTATGACCGAAAATAATTTTGAGATAGGTGATATTTTCTAAGAAATTTTTTTTTTTTGAAATTTTGAAAATTTTTCTAGATTTTTAAAAGATTTTCACATTAATAGTTGGATTTTCAGACTTAGAACTTTTTAAATTTTTTGAAAAATATTTTTCCCTTTTTGGTGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAMGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAGGATTTTACATTTTTTTGAAAGTAGGAAAAAATTGACAGATTCAGGATCAAAATAAAACGTTTTGAAAAAAATCAAAAAAAGTTTTTTGATCATAACTTTCTCAATTTTCAGAATTTTCTGCTGGAACTCAATTTTTTGAATTTGAAACGTTAAGAGCTTTGAAATGAGTATAAACACGACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTTCTATCAAAATCAACAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGATTTTTCTGAAATTTAGAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTC</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAMGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38104</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>29124</contig_pos>
        <strand>+</strand>
        <context>AATTTTCAAA[A/C]TCAAAAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAA</left_flank>
        <right_flank>TCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTTCACATTAATAGTTGGATTTTCAGACTTAGAACTTTTTAAATTTTTTGAAAAATATTTTTCCCTTTTTGGTGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAGGATTTTACATTTTTTTGAAAGTAGGAAAAAATTGACAGATTCAGGATCAAAATAAAACGTTTTGAAAAAAATCAAAAAAAGTTTTTTGATCATAACTTTCTCAATTTTCAGAATTTTCTGCTGGAACTCAATTTTTTGAATTTGAAACGTTAAGAGCTTTGAAATGAGTATAAACACGACTAGGCTCCGCCCACTTTGATTTTTCGACTTTAAAGGCGCATAGGGGGTCCGAAATACTGAAAATTTCAAAAGTAGGTCATGATTATACTCATTTTAAAGCTCTTCACGTGGGAAATTCAAAAAT</canonical>
            <polymorphic>GATTTTCACATTAATAGTTGGATTTTCAGACTTAGAACTTTTTAAATTTTTTGAAAAATATTTTTCCCTTTTTGGTGTCTTCCATATACATGCTCAGAGGCGACACAGTTTCTCATGCACACCTATACATATGGACGACACGTCATCACTCCCCTCTTATCATCTCAAAATGTTTGTCTGCGTCCCTCAATTTCCCACACTCTCTCGCCTCTTTTTCTATCAAAATCAACAAATAAATGGCTATCTTAGCAGCGAGAAAAGGGAATCAATGGGCGAGATGGCGAGAGAGTGTGTGGGGAGAGGAGAGTCTAGAGAAAACAGACAGAACGAATTCTCATTTCTCTCTCCTTATCAGTTATCAGGTACATGGATGGACAGGTCTTGTTACAGTTTCAAAATTTTGGGAAAATTGGGAAAATTGAAAAATCATAAAAACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAAMTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAGGATTTTACATTTTTTTGAAAGTAGGAAAAAATTGACAGATTCAGGATCAAAATAAAACGTTTTGAAAAAAATCAAAAAAAGTTTTTTGATCATAACTTTCTCAATTTTCAGAATTTTCTGCTGGAACTCAATTTTTTGAATTTGAAACGTTAAGAGCTTTGAAATGAGTATAAACACGACTAGGCTCCGCCCACTTTGATTTTTCGACTTTAAAGGCGCATAGGGGGTCCGAAATACTGAAAATTTCAAAAGTAGGTCATGATTATACTCATTTTAAAGCTCTTCACGTGGGAAATTCAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>285 127 103 70 67 52 49 44 44 29 29 27 25 11 10 8 7 7 6</canonical_bands>
                <polymorphic_bands>285 127 103 70 67 52 49 44 44 29 29 27 25 18 11 7 7 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>144 141 103 73 67 52 49 45 44 39 29 29 25 24 18 16 15 11 11 10 9 9 9 8 7 7 6</canonical_bands>
                <polymorphic_bands>144 141 103 73 67 52 49 45 44 39 29 29 25 24 18 18 16 15 11 11 9 9 9 7 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTCTAAATTTCAGAAAAATCTCA</pcr_primer_p1>
		<pcr_primer_p2>CTAGGGATCTCAAATTTTATGC</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>AACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAATTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAG</canonical_amplicon>
		<polymorphic_amplicon>AACTCTAAATTTCAGAAAAATCTCAAAAAAAGGAAACCAAAGAAGCAAATAGAAAAAATTTTCAAAMTCAAAAAAATTTGAATTTCGCGCCGACAGGTCTCGATTCAAAAATTTAAAATTTTGAGCATAGATTTGCCTTAAAATTCCAAATTTTCGCATCAAGACCTGGCGGCGCAAAATTCCTTGCTTAAAATACGCGCCAAAGGCGCTCCAGACAATTTTTTTTTCGAAAAATTGCTCAGCATAAAATTTGAGATCCCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38105</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>60242</contig_pos>
        <strand>+</strand>
        <context>TTTTTGAGCT[G/T]AAAAAATCGA</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGCTCCATTGAAAAAAGTAGGAAAATCACTTTTTGGGGGTTTTTGAGCT</left_flank>
        <right_flank>AAAAAATCGATTAAAATTATTGCAAAAACAAAAAATATTGATTTTTCAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATCGACTTTTTTCAGACTATTTTTCTTGATAAAGTTGGCCGAATTTGTCTGAAAATCGATTTTAAGACTGCCAAAATCAAAAAAAATCGATAATTTCTGAGAAAAAATTTCGAAAAAATTCCAAAAAAAAATTTTTTTTTGGCTGAAAATCAATTTTTCAGACTAATTTCTGCTGGAAATTCGAATTTTCCAATTTTCGAGACGCTGAAATTCAAATTTCAGTCAGAAAATCGATAAATTTTGAGAAAAAAAATCGGGAAAAAAATTTCAAAAAAAAATTTTTTTCCAATTTTCTTTTCTTTTTTTCCAATTTTCTTTTCTTCAGTAAAATCCATGTTTCTCACTCTAAAATCACTCAAAAATATCGATTTTTATCAAAAACTGCCCCAAAATCCCCCAAAAACGATTGCTTTTTCTATTTTTTCGAAATTCCGGGGTCATCAAGTTTGCTCCATTGAAAAAAGTAGGAAAATCACTTTTTGGGGGTTTTTGAGCTCAAAAAATCGATTAAAATTATTGCAAAAACAAAAAATATTGATTTTTCAGTCAAAACTTGCAATTTCAGCAAAAAAAAGTTCAAAAAAAAATTTTTTTTCCAAATTTTTTTTTTCAAATTTCCAAAAAATTCATGTTTCTCGCTGAAAAGAAACTCAGTTTTATCGATTTTTCGCCAAAAATCACCCCAAAAACCCCCTAAAAGTCATTGATTTTTCGGAAAATCGATAATTTATCGATTTTTTACATTTTTTTTCAAAATTTTTTTCAAAGCGATTTTTAGGCATTTTTAGGCTTCTAAAAAGCAATTTTCTCAGCAAAAATCTATCGATTTTCGTTCCAGAAGTACCAGGAGGCTGAGACGGAGTTCGAGAAGTTCAAAAAGCCAAAAACCGATGAGAACCTGTCCCAGAACACCTATGCCTCGCGGAAATCCCGAGCCAAAACCGCTTTTGAGCTGGCGAAATTGAGATTTGAAGCGAAAAATCTGGAAGTGGAGCTG</canonical>
            <polymorphic>AAAATCGACTTTTTTCAGACTATTTTTCTTGATAAAGTTGGCCGAATTTGTCTGAAAATCGATTTTAAGACTGCCAAAATCAAAAAAAATCGATAATTTCTGAGAAAAAATTTCGAAAAAATTCCAAAAAAAAATTTTTTTTTGGCTGAAAATCAATTTTTCAGACTAATTTCTGCTGGAAATTCGAATTTTCCAATTTTCGAGACGCTGAAATTCAAATTTCAGTCAGAAAATCGATAAATTTTGAGAAAAAAAATCGGGAAAAAAATTTCAAAAAAAAATTTTTTTCCAATTTTCTTTTCTTTTTTTCCAATTTTCTTTTCTTCAGTAAAATCCATGTTTCTCACTCTAAAATCACTCAAAAATATCGATTTTTATCAAAAACTGCCCCAAAATCCCCCAAAAACGATTGCTTTTTCTATTTTTTCGAAATTCCGGGGTCATCAAGTTTGCTCCATTGAAAAAAGTAGGAAAATCACTTTTTGGGGGTTTTTGAGCTKAAAAAATCGATTAAAATTATTGCAAAAACAAAAAATATTGATTTTTCAGTCAAAACTTGCAATTTCAGCAAAAAAAAGTTCAAAAAAAAATTTTTTTTCCAAATTTTTTTTTTCAAATTTCCAAAAAATTCATGTTTCTCGCTGAAAAGAAACTCAGTTTTATCGATTTTTCGCCAAAAATCACCCCAAAAACCCCCTAAAAGTCATTGATTTTTCGGAAAATCGATAATTTATCGATTTTTTACATTTTTTTTCAAAATTTTTTTCAAAGCGATTTTTAGGCATTTTTAGGCTTCTAAAAAGCAATTTTCTCAGCAAAAATCTATCGATTTTCGTTCCAGAAGTACCAGGAGGCTGAGACGGAGTTCGAGAAGTTCAAAAAGCCAAAAACCGATGAGAACCTGTCCCAGAACACCTATGCCTCGCGGAAATCCCGAGCCAAAACCGCTTTTGAGCTGGCGAAATTGAGATTTGAAGCGAAAAATCTGGAAGTGGAGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTTCTTCAGTAAAATCCATGT</pcr_primer_p1>
		<pcr_primer_p2>CTGAAATTGCAAGTTTTGACT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTTTTCTTCAGTAAAATCCATGTTTCTCACTCTAAAATCACTCAAAAATATCGATTTTTATCAAAAACTGCCCCAAAATCCCCCAAAAACGATTGCTTTTTCTATTTTTTCGAAATTCCGGGGTCATCAAGTTTGCTCCATTGAAAAAAGTAGGAAAATCACTTTTTGGGGGTTTTTGAGCTCAAAAAATCGATTAAAATTATTGCAAAAACAAAAAATATTGATTTTTCAGTCAAAACTTGCAATTTCAG</canonical_amplicon>
		<polymorphic_amplicon>CTTTTCTTCAGTAAAATCCATGTTTCTCACTCTAAAATCACTCAAAAATATCGATTTTTATCAAAAACTGCCCCAAAATCCCCCAAAAACGATTGCTTTTTCTATTTTTTCGAAATTCCGGGGTCATCAAGTTTGCTCCATTGAAAAAAGTAGGAAAATCACTTTTTGGGGGTTTTTGAGCTKAAAAAATCGATTAAAATTATTGCAAAAACAAAAAATATTGATTTTTCAGTCAAAACTTGCAATTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38106</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>60256</contig_pos>
        <strand>+</strand>
        <context>AAATCGATTA[A/C]AATTATTGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAGTAGGAAAATCACTTTTTGGGGGTTTTTGAGCTCAAAAAATCGATTA</left_flank>
        <right_flank>AATTATTGCAAAAACAAAAAATATTGATTTTTCAGTCAAAACTTGCAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGACTATTTTTCTTGATAAAGTTGGCCGAATTTGTCTGAAAATCGATTTTAAGACTGCCAAAATCAAAAAAAATCGATAATTTCTGAGAAAAAATTTCGAAAAAATTCCAAAAAAAAATTTTTTTTTGGCTGAAAATCAATTTTTCAGACTAATTTCTGCTGGAAATTCGAATTTTCCAATTTTCGAGACGCTGAAATTCAAATTTCAGTCAGAAAATCGATAAATTTTGAGAAAAAAAATCGGGAAAAAAATTTCAAAAAAAAATTTTTTTCCAATTTTCTTTTCTTTTTTTCCAATTTTCTTTTCTTCAGTAAAATCCATGTTTCTCACTCTAAAATCACTCAAAAATATCGATTTTTATCAAAAACTGCCCCAAAATCCCCCAAAAACGATTGCTTTTTCTATTTTTTCGAAATTCCGGGGTCATCAAGTTTGCTCCATTGAAAAAAGTAGGAAAATCACTTTTTGGGGGTTTTTGAGCTCAAAAAATCGATTAAAATTATTGCAAAAACAAAAAATATTGATTTTTCAGTCAAAACTTGCAATTTCAGCAAAAAAAAGTTCAAAAAAAAATTTTTTTTCCAAATTTTTTTTTTCAAATTTCCAAAAAATTCATGTTTCTCGCTGAAAAGAAACTCAGTTTTATCGATTTTTCGCCAAAAATCACCCCAAAAACCCCCTAAAAGTCATTGATTTTTCGGAAAATCGATAATTTATCGATTTTTTACATTTTTTTTCAAAATTTTTTTCAAAGCGATTTTTAGGCATTTTTAGGCTTCTAAAAAGCAATTTTCTCAGCAAAAATCTATCGATTTTCGTTCCAGAAGTACCAGGAGGCTGAGACGGAGTTCGAGAAGTTCAAAAAGCCAAAAACCGATGAGAACCTGTCCCAGAACACCTATGCCTCGCGGAAATCCCGAGCCAAAACCGCTTTTGAGCTGGCGAAATTGAGATTTGAAGCGAAAAATCTGGAAGTGGAGCTGGAAAAAAATGTGAA</canonical>
            <polymorphic>TCAGACTATTTTTCTTGATAAAGTTGGCCGAATTTGTCTGAAAATCGATTTTAAGACTGCCAAAATCAAAAAAAATCGATAATTTCTGAGAAAAAATTTCGAAAAAATTCCAAAAAAAAATTTTTTTTTGGCTGAAAATCAATTTTTCAGACTAATTTCTGCTGGAAATTCGAATTTTCCAATTTTCGAGACGCTGAAATTCAAATTTCAGTCAGAAAATCGATAAATTTTGAGAAAAAAAATCGGGAAAAAAATTTCAAAAAAAAATTTTTTTCCAATTTTCTTTTCTTTTTTTCCAATTTTCTTTTCTTCAGTAAAATCCATGTTTCTCACTCTAAAATCACTCAAAAATATCGATTTTTATCAAAAACTGCCCCAAAATCCCCCAAAAACGATTGCTTTTTCTATTTTTTCGAAATTCCGGGGTCATCAAGTTTGCTCCATTGAAAAAAGTAGGAAAATCACTTTTTGGGGGTTTTTGAGCTCAAAAAATCGATTAMAATTATTGCAAAAACAAAAAATATTGATTTTTCAGTCAAAACTTGCAATTTCAGCAAAAAAAAGTTCAAAAAAAAATTTTTTTTCCAAATTTTTTTTTTCAAATTTCCAAAAAATTCATGTTTCTCGCTGAAAAGAAACTCAGTTTTATCGATTTTTCGCCAAAAATCACCCCAAAAACCCCCTAAAAGTCATTGATTTTTCGGAAAATCGATAATTTATCGATTTTTTACATTTTTTTTCAAAATTTTTTTCAAAGCGATTTTTAGGCATTTTTAGGCTTCTAAAAAGCAATTTTCTCAGCAAAAATCTATCGATTTTCGTTCCAGAAGTACCAGGAGGCTGAGACGGAGTTCGAGAAGTTCAAAAAGCCAAAAACCGATGAGAACCTGTCCCAGAACACCTATGCCTCGCGGAAATCCCGAGCCAAAACCGCTTTTGAGCTGGCGAAATTGAGATTTGAAGCGAAAAATCTGGAAGTGGAGCTGGAAAAAAATGTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>503 446 51</canonical_bands>
                <polymorphic_bands>949 51</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTTCTTCAGTAAAATCCATGT</pcr_primer_p1>
		<pcr_primer_p2>CTGAAATTGCAAGTTTTGACT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTTTTCTTCAGTAAAATCCATGTTTCTCACTCTAAAATCACTCAAAAATATCGATTTTTATCAAAAACTGCCCCAAAATCCCCCAAAAACGATTGCTTTTTCTATTTTTTCGAAATTCCGGGGTCATCAAGTTTGCTCCATTGAAAAAAGTAGGAAAATCACTTTTTGGGGGTTTTTGAGCTCAAAAAATCGATTAAAATTATTGCAAAAACAAAAAATATTGATTTTTCAGTCAAAACTTGCAATTTCAG</canonical_amplicon>
		<polymorphic_amplicon>CTTTTCTTCAGTAAAATCCATGTTTCTCACTCTAAAATCACTCAAAAATATCGATTTTTATCAAAAACTGCCCCAAAATCCCCCAAAAACGATTGCTTTTTCTATTTTTTCGAAATTCCGGGGTCATCAAGTTTGCTCCATTGAAAAAAGTAGGAAAATCACTTTTTGGGGGTTTTTGAGCTCAAAAAATCGATTAMAATTATTGCAAAAACAAAAAATATTGATTTTTCAGTCAAAACTTGCAATTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38107</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>96159</contig_pos>
        <strand></strand>
        <context>ctgaatgcta[A/T]ttcyarctct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTA</left_flank>
        <right_flank>TTCCAGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTT</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGCGACGCGGACGCGTCGCGGCTCGCGGAATTTCGGTTTTCATTTTTTCATCGAAAAGTCCTGTTTTTTTCGGAATTTTTCAGTCAAATTCAGCATTTGACCTCATATTTGAGCTAAAAATCAATCAATTTTTTCACTTTTTTTTCAATTCAGAAATTCTGGAATTTTGATTTTCAGCCAGTTTTTTCTGGAAAATTCTGGATTTTTGGCTGAAAATTCTGATTTTTAGGCCAATTTCGCAATCCCCTCTCACCACCTGACACCACACGCGACGCGACCGCGCCGCTTGCCCCGCGCGCCCGCCAATTTCGAAATTAGCGATGCGCGCGCGTTGCGGTCGCGTAGCGTGTCCGGCCTTAGTTTTTCAAAAATCGGTCATTTTTACCCGATGTCGTCGTGATGAGCGGCGGTTTTTTGGGGCTCTTTTTTAAATATTTTTTTTCAGGTTTAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAATTCCAGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTAGTCGATTTTGCGGAAATTTTTCTGAAATGTCTGAGAAAATCTTAATTTTCTGAAAATTCCAGATTTTTCTCAGAAAAATATGGTTTTTTTTTGGAGCGAAATCTTTCTTCTTTAGCTCCCCTGCTGCGTGGCACGCGACGCGACCGCTTCGCGCGGGAGGGAATCGCAACCGCGCTCCACCGTACGCGCGGCTTGTCGCGTCGCGGCACGCGCGAAGTTGAAGCATTTGAATTTGTTTCGGTGATATTAAGGGGAAAATTGATCGTTTTGTGACTTTTCGGGTCTTTTTTTCGCGATTTTGTTTGAAAAAGTAGTATAATATGTGGGGAATTCCCTAGTGAATGTTGATTTTAGCAGAAGTTTCCCCGAAAATATAATTTTTTTCGAAAAAAAGAATACTTTTTA</canonical>
            <polymorphic>CGGCGACGCGGACGCGTCGCGGCTCGCGGAATTTCGGTTTTCATTTTTTCATCGAAAAGTCCTGTTTTTTTCGGAATTTTTCAGTCAAATTCAGCATTTGACCTCATATTTGAGCTAAAAATCAATCAATTTTTTCACTTTTTTTTCAATTCAGAAATTCTGGAATTTTGATTTTCAGCCAGTTTTTTCTGGAAAATTCTGGATTTTTGGCTGAAAATTCTGATTTTTAGGCCAATTTCGCAATCCCCTCTCACCACCTGACACCACACGCGACGCGACCGCGCCGCTTGCCCCGCGCGCCCGCCAATTTCGAAATTAGCGATGCGCGCGCGTTGCGGTCGCGTAGCGTGTCCGGCCTTAGTTTTTCAAAAATCGGTCATTTTTACCCGATGTCGTCGTGATGAGCGGCGGTTTTTTGGGGCTCTTTTTTAAATATTTTTTTTCAGGTTTAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAWTTCCAGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTAGTCGATTTTGCGGAAATTTTTCTGAAATGTCTGAGAAAATCTTAATTTTCTGAAAATTCCAGATTTTTCTCAGAAAAATATGGTTTTTTTTTGGAGCGAAATCTTTCTTCTTTAGCTCCCCTGCTGCGTGGCACGCGACGCGACCGCTTCGCGCGGGAGGGAATCGCAACCGCGCTCCACCGTACGCGCGGCTTGTCGCGTCGCGGCACGCGCGAAGTTGAAGCATTTGAATTTGTTTCGGTGATATTAAGGGGAAAATTGATCGTTTTGTGACTTTTCGGGTCTTTTTTTCGCGATTTTGTTTGAAAAAGTAGTATAATATGTGGGGAATTCCCTAGTGAATGTTGATTTTAGCAGAAGTTTCCCCGAAAATATAATTTTTTTCGAAAAAAAGAATACTTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>185 175 72 72 47 45 43 40 36 31 30 29 29 27 21 20 19 18 13 13 11 8 8 8</canonical_bands>
                <polymorphic_bands>228 175 72 72 47 45 40 36 31 30 29 29 27 21 20 19 18 13 13 11 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAATCGGTCATTTTTACC</pcr_primer_p1>
		<pcr_primer_p2>AATTAAGATTTTCTCAGACATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>276</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATCGGTCATTTTTACCCGATGTCGTCGTGATGAGCGGCGGTTTTTTGGGGCTCTTTTTTAAATATTTTTTTTCAGGTTTAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAATTCCAGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTAGTCGATTTTGCGGAAATTTTTCTGAAATGTCTGAGAAAATCTTAATT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAATCGGTCATTTTTACCCGATGTCGTCGTGATGAGCGGCGGTTTTTTGGGGCTCTTTTTTAAATATTTTTTTTCAGGTTTAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAWTTCCAGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTAGTCGATTTTGCGGAAATTTTTCTGAAATGTCTGAGAAAATCTTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38108</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>96163</contig_pos>
        <strand></strand>
        <context>atgctawttc[C/T]arctctagaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAATTC</left_flank>
        <right_flank>AGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGCGGACGCGTCGCGGCTCGCGGAATTTCGGTTTTCATTTTTTCATCGAAAAGTCCTGTTTTTTTCGGAATTTTTCAGTCAAATTCAGCATTTGACCTCATATTTGAGCTAAAAATCAATCAATTTTTTCACTTTTTTTTCAATTCAGAAATTCTGGAATTTTGATTTTCAGCCAGTTTTTTCTGGAAAATTCTGGATTTTTGGCTGAAAATTCTGATTTTTAGGCCAATTTCGCAATCCCCTCTCACCACCTGACACCACACGCGACGCGACCGCGCCGCTTGCCCCGCGCGCCCGCCAATTTCGAAATTAGCGATGCGCGCGCGTTGCGGTCGCGTAGCGTGTCCGGCCTTAGTTTTTCAAAAATCGGTCATTTTTACCCGATGTCGTCGTGATGAGCGGCGGTTTTTTGGGGCTCTTTTTTAAATATTTTTTTTCAGGTTTAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAATTCCAGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTAGTCGATTTTGCGGAAATTTTTCTGAAATGTCTGAGAAAATCTTAATTTTCTGAAAATTCCAGATTTTTCTCAGAAAAATATGGTTTTTTTTTGGAGCGAAATCTTTCTTCTTTAGCTCCCCTGCTGCGTGGCACGCGACGCGACCGCTTCGCGCGGGAGGGAATCGCAACCGCGCTCCACCGTACGCGCGGCTTGTCGCGTCGCGGCACGCGCGAAGTTGAAGCATTTGAATTTGTTTCGGTGATATTAAGGGGAAAATTGATCGTTTTGTGACTTTTCGGGTCTTTTTTTCGCGATTTTGTTTGAAAAAGTAGTATAATATGTGGGGAATTCCCTAGTGAATGTTGATTTTAGCAGAAGTTTCCCCGAAAATATAATTTTTTTCGAAAAAAAGAATACTTTTTAGAAT</canonical>
            <polymorphic>GACGCGGACGCGTCGCGGCTCGCGGAATTTCGGTTTTCATTTTTTCATCGAAAAGTCCTGTTTTTTTCGGAATTTTTCAGTCAAATTCAGCATTTGACCTCATATTTGAGCTAAAAATCAATCAATTTTTTCACTTTTTTTTCAATTCAGAAATTCTGGAATTTTGATTTTCAGCCAGTTTTTTCTGGAAAATTCTGGATTTTTGGCTGAAAATTCTGATTTTTAGGCCAATTTCGCAATCCCCTCTCACCACCTGACACCACACGCGACGCGACCGCGCCGCTTGCCCCGCGCGCCCGCCAATTTCGAAATTAGCGATGCGCGCGCGTTGCGGTCGCGTAGCGTGTCCGGCCTTAGTTTTTCAAAAATCGGTCATTTTTACCCGATGTCGTCGTGATGAGCGGCGGTTTTTTGGGGCTCTTTTTTAAATATTTTTTTTCAGGTTTAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAATTCYAGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTAGTCGATTTTGCGGAAATTTTTCTGAAATGTCTGAGAAAATCTTAATTTTCTGAAAATTCCAGATTTTTCTCAGAAAAATATGGTTTTTTTTTGGAGCGAAATCTTTCTTCTTTAGCTCCCCTGCTGCGTGGCACGCGACGCGACCGCTTCGCGCGGGAGGGAATCGCAACCGCGCTCCACCGTACGCGCGGCTTGTCGCGTCGCGGCACGCGCGAAGTTGAAGCATTTGAATTTGTTTCGGTGATATTAAGGGGAAAATTGATCGTTTTGTGACTTTTCGGGTCTTTTTTTCGCGATTTTGTTTGAAAAAGTAGTATAATATGTGGGGAATTCCCTAGTGAATGTTGATTTTAGCAGAAGTTTCCCCGAAAATATAATTTTTTTCGAAAAAAAGAATACTTTTTAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAATCGGTCATTTTTACC</pcr_primer_p1>
		<pcr_primer_p2>AATTAAGATTTTCTCAGACATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>276</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATCGGTCATTTTTACCCGATGTCGTCGTGATGAGCGGCGGTTTTTTGGGGCTCTTTTTTAAATATTTTTTTTCAGGTTTAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAATTCCAGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTAGTCGATTTTGCGGAAATTTTTCTGAAATGTCTGAGAAAATCTTAATT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAATCGGTCATTTTTACCCGATGTCGTCGTGATGAGCGGCGGTTTTTTGGGGCTCTTTTTTAAATATTTTTTTTCAGGTTTAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAATTCYAGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTAGTCGATTTTGCGGAAATTTTTCTGAAATGTCTGAGAAAATCTTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38109</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>96165</contig_pos>
        <strand></strand>
        <context>gctawttcya[G/A]ctctagaaAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAATTCCA</left_flank>
        <right_flank>CTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCGGACGCGTCGCGGCTCGCGGAATTTCGGTTTTCATTTTTTCATCGAAAAGTCCTGTTTTTTTCGGAATTTTTCAGTCAAATTCAGCATTTGACCTCATATTTGAGCTAAAAATCAATCAATTTTTTCACTTTTTTTTCAATTCAGAAATTCTGGAATTTTGATTTTCAGCCAGTTTTTTCTGGAAAATTCTGGATTTTTGGCTGAAAATTCTGATTTTTAGGCCAATTTCGCAATCCCCTCTCACCACCTGACACCACACGCGACGCGACCGCGCCGCTTGCCCCGCGCGCCCGCCAATTTCGAAATTAGCGATGCGCGCGCGTTGCGGTCGCGTAGCGTGTCCGGCCTTAGTTTTTCAAAAATCGGTCATTTTTACCCGATGTCGTCGTGATGAGCGGCGGTTTTTTGGGGCTCTTTTTTAAATATTTTTTTTCAGGTTTAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAATTCCAGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTAGTCGATTTTGCGGAAATTTTTCTGAAATGTCTGAGAAAATCTTAATTTTCTGAAAATTCCAGATTTTTCTCAGAAAAATATGGTTTTTTTTTGGAGCGAAATCTTTCTTCTTTAGCTCCCCTGCTGCGTGGCACGCGACGCGACCGCTTCGCGCGGGAGGGAATCGCAACCGCGCTCCACCGTACGCGCGGCTTGTCGCGTCGCGGCACGCGCGAAGTTGAAGCATTTGAATTTGTTTCGGTGATATTAAGGGGAAAATTGATCGTTTTGTGACTTTTCGGGTCTTTTTTTCGCGATTTTGTTTGAAAAAGTAGTATAATATGTGGGGAATTCCCTAGTGAATGTTGATTTTAGCAGAAGTTTCCCCGAAAATATAATTTTTTTCGAAAAAAAGAATACTTTTTAGAATTT</canonical>
            <polymorphic>CGCGGACGCGTCGCGGCTCGCGGAATTTCGGTTTTCATTTTTTCATCGAAAAGTCCTGTTTTTTTCGGAATTTTTCAGTCAAATTCAGCATTTGACCTCATATTTGAGCTAAAAATCAATCAATTTTTTCACTTTTTTTTCAATTCAGAAATTCTGGAATTTTGATTTTCAGCCAGTTTTTTCTGGAAAATTCTGGATTTTTGGCTGAAAATTCTGATTTTTAGGCCAATTTCGCAATCCCCTCTCACCACCTGACACCACACGCGACGCGACCGCGCCGCTTGCCCCGCGCGCCCGCCAATTTCGAAATTAGCGATGCGCGCGCGTTGCGGTCGCGTAGCGTGTCCGGCCTTAGTTTTTCAAAAATCGGTCATTTTTACCCGATGTCGTCGTGATGAGCGGCGGTTTTTTGGGGCTCTTTTTTAAATATTTTTTTTCAGGTTTAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAATTCCARCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTAGTCGATTTTGCGGAAATTTTTCTGAAATGTCTGAGAAAATCTTAATTTTCTGAAAATTCCAGATTTTTCTCAGAAAAATATGGTTTTTTTTTGGAGCGAAATCTTTCTTCTTTAGCTCCCCTGCTGCGTGGCACGCGACGCGACCGCTTCGCGCGGGAGGGAATCGCAACCGCGCTCCACCGTACGCGCGGCTTGTCGCGTCGCGGCACGCGCGAAGTTGAAGCATTTGAATTTGTTTCGGTGATATTAAGGGGAAAATTGATCGTTTTGTGACTTTTCGGGTCTTTTTTTCGCGATTTTGTTTGAAAAAGTAGTATAATATGTGGGGAATTCCCTAGTGAATGTTGATTTTAGCAGAAGTTTCCCCGAAAATATAATTTTTTTCGAAAAAAAGAATACTTTTTAGAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>392 296 204 108</canonical_bands>
                <polymorphic_bands>596 296 108</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>220 204 124 92 76 66 66 64 32 21 19 16</canonical_bands>
                <polymorphic_bands>223 220 124 92 76 66 66 64 32 21 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAATCGGTCATTTTTACC</pcr_primer_p1>
		<pcr_primer_p2>AATTAAGATTTTCTCAGACATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>276</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATCGGTCATTTTTACCCGATGTCGTCGTGATGAGCGGCGGTTTTTTGGGGCTCTTTTTTAAATATTTTTTTTCAGGTTTAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAATTCCAGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTAGTCGATTTTGCGGAAATTTTTCTGAAATGTCTGAGAAAATCTTAATT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAATCGGTCATTTTTACCCGATGTCGTCGTGATGAGCGGCGGTTTTTTGGGGCTCTTTTTTAAATATTTTTTTTCAGGTTTAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAATTCCARCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTAGTCGATTTTGCGGAAATTTTTCTGAAATGTCTGAGAAAATCTTAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38110</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>96254</contig_pos>
        <strand>+</strand>
        <context>GAGAAAAATT[A/G]GTCGATTTTS</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATT</left_flank>
        <right_flank>GTCGATTTTGCGGAAATTTTTCTGAAATGTCTGAGAAAATCTTAATTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGACCTCATATTTGAGCTAAAAATCAATCAATTTTTTCACTTTTTTTTCAATTCAGAAATTCTGGAATTTTGATTTTCAGCCAGTTTTTTCTGGAAAATTCTGGATTTTTGGCTGAAAATTCTGATTTTTAGGCCAATTTCGCAATCCCCTCTCACCACCTGACACCACACGCGACGCGACCGCGCCGCTTGCCCCGCGCGCCCGCCAATTTCGAAATTAGCGATGCGCGCGCGTTGCGGTCGCGTAGCGTGTCCGGCCTTAGTTTTTCAAAAATCGGTCATTTTTACCCGATGTCGTCGTGATGAGCGGCGGTTTTTTGGGGCTCTTTTTTAAATATTTTTTTTCAGGTTTAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAATTCCAGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTAGTCGATTTTGCGGAAATTTTTCTGAAATGTCTGAGAAAATCTTAATTTTCTGAAAATTCCAGATTTTTCTCAGAAAAATATGGTTTTTTTTTGGAGCGAAATCTTTCTTCTTTAGCTCCCCTGCTGCGTGGCACGCGACGCGACCGCTTCGCGCGGGAGGGAATCGCAACCGCGCTCCACCGTACGCGCGGCTTGTCGCGTCGCGGCACGCGCGAAGTTGAAGCATTTGAATTTGTTTCGGTGATATTAAGGGGAAAATTGATCGTTTTGTGACTTTTCGGGTCTTTTTTTCGCGATTTTGTTTGAAAAAGTAGTATAATATGTGGGGAATTCCCTAGTGAATGTTGATTTTAGCAGAAGTTTCCCCGAAAATATAATTTTTTTCGAAAAAAAGAATACTTTTTAGAATTTGTTTGTTTTTGTTTTATCGCAGCAGTTCCCAAAGGATTCCAGAGATTTTCGAAGTTTTCTAAGCACTGGGAATTGCTAATTTTCGAAAA</canonical>
            <polymorphic>ATTTGACCTCATATTTGAGCTAAAAATCAATCAATTTTTTCACTTTTTTTTCAATTCAGAAATTCTGGAATTTTGATTTTCAGCCAGTTTTTTCTGGAAAATTCTGGATTTTTGGCTGAAAATTCTGATTTTTAGGCCAATTTCGCAATCCCCTCTCACCACCTGACACCACACGCGACGCGACCGCGCCGCTTGCCCCGCGCGCCCGCCAATTTCGAAATTAGCGATGCGCGCGCGTTGCGGTCGCGTAGCGTGTCCGGCCTTAGTTTTTCAAAAATCGGTCATTTTTACCCGATGTCGTCGTGATGAGCGGCGGTTTTTTGGGGCTCTTTTTTAAATATTTTTTTTCAGGTTTAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAATTCCAGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTRGTCGATTTTGCGGAAATTTTTCTGAAATGTCTGAGAAAATCTTAATTTTCTGAAAATTCCAGATTTTTCTCAGAAAAATATGGTTTTTTTTTGGAGCGAAATCTTTCTTCTTTAGCTCCCCTGCTGCGTGGCACGCGACGCGACCGCTTCGCGCGGGAGGGAATCGCAACCGCGCTCCACCGTACGCGCGGCTTGTCGCGTCGCGGCACGCGCGAAGTTGAAGCATTTGAATTTGTTTCGGTGATATTAAGGGGAAAATTGATCGTTTTGTGACTTTTCGGGTCTTTTTTTCGCGATTTTGTTTGAAAAAGTAGTATAATATGTGGGGAATTCCCTAGTGAATGTTGATTTTAGCAGAAGTTTCCCCGAAAATATAATTTTTTTCGAAAAAAAGAATACTTTTTAGAATTTGTTTGTTTTTGTTTTATCGCAGCAGTTCCCAAAGGATTCCAGAGATTTTCGAAGTTTTCTAAGCACTGGGAATTGCTAATTTTCGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCTAGAAACTCCTAGTTTTCTCTT</pcr_primer_p1>
		<pcr_primer_p2>AACAAATTCAAATGCTTCAACT</pcr_primer_p2>
		<pcr_amplicon_size>318</pcr_amplicon_size>
		<canonical_amplicon>ACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTAGTCGATTTTGCGGAAATTTTTCTGAAATGTCTGAGAAAATCTTAATTTTCTGAAAATTCCAGATTTTTCTCAGAAAAATATGGTTTTTTTTTGGAGCGAAATCTTTCTTCTTTAGCTCCCCTGCTGCGTGGCACGCGACGCGACCGCTTCGCGCGGGAGGGAATCGCAACCGCGCTCCACCGTACGCGCGGCTTGTCGCGTCGCGGCACGCGCGAAGTTGAAGCATTTGAATTTGTT</canonical_amplicon>
		<polymorphic_amplicon>ACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTRGTCGATTTTGCGGAAATTTTTCTGAAATGTCTGAGAAAATCTTAATTTTCTGAAAATTCCAGATTTTTCTCAGAAAAATATGGTTTTTTTTTGGAGCGAAATCTTTCTTCTTTAGCTCCCCTGCTGCGTGGCACGCGACGCGACCGCTTCGCGCGGGAGGGAATCGCAACCGCGCTCCACCGTACGCGCGGCTTGTCGCGTCGCGGCACGCGCGAAGTTGAAGCATTTGAATTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38111</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>96264</contig_pos>
        <strand>+</strand>
        <context>RGTCGATTTT[C/G]CGGAAATTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTAGTCGATTTT</left_flank>
        <right_flank>CGGAAATTTTTCTGAAATGTCTGAGAAAATCTTAATTTTCTGAAAATTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATTTGAGCTAAAAATCAATCAATTTTTTCACTTTTTTTTCAATTCAGAAATTCTGGAATTTTGATTTTCAGCCAGTTTTTTCTGGAAAATTCTGGATTTTTGGCTGAAAATTCTGATTTTTAGGCCAATTTCGCAATCCCCTCTCACCACCTGACACCACACGCGACGCGACCGCGCCGCTTGCCCCGCGCGCCCGCCAATTTCGAAATTAGCGATGCGCGCGCGTTGCGGTCGCGTAGCGTGTCCGGCCTTAGTTTTTCAAAAATCGGTCATTTTTACCCGATGTCGTCGTGATGAGCGGCGGTTTTTTGGGGCTCTTTTTTAAATATTTTTTTTCAGGTTTAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAATTCCAGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTAGTCGATTTTGCGGAAATTTTTCTGAAATGTCTGAGAAAATCTTAATTTTCTGAAAATTCCAGATTTTTCTCAGAAAAATATGGTTTTTTTTTGGAGCGAAATCTTTCTTCTTTAGCTCCCCTGCTGCGTGGCACGCGACGCGACCGCTTCGCGCGGGAGGGAATCGCAACCGCGCTCCACCGTACGCGCGGCTTGTCGCGTCGCGGCACGCGCGAAGTTGAAGCATTTGAATTTGTTTCGGTGATATTAAGGGGAAAATTGATCGTTTTGTGACTTTTCGGGTCTTTTTTTCGCGATTTTGTTTGAAAAAGTAGTATAATATGTGGGGAATTCCCTAGTGAATGTTGATTTTAGCAGAAGTTTCCCCGAAAATATAATTTTTTTCGAAAAAAAGAATACTTTTTAGAATTTGTTTGTTTTTGTTTTATCGCAGCAGTTCCCAAAGGATTCCAGAGATTTTCGAAGTTTTCTAAGCACTGGGAATTGCTAATTTTCGAAAAAAAATTTCCT</canonical>
            <polymorphic>ATATTTGAGCTAAAAATCAATCAATTTTTTCACTTTTTTTTCAATTCAGAAATTCTGGAATTTTGATTTTCAGCCAGTTTTTTCTGGAAAATTCTGGATTTTTGGCTGAAAATTCTGATTTTTAGGCCAATTTCGCAATCCCCTCTCACCACCTGACACCACACGCGACGCGACCGCGCCGCTTGCCCCGCGCGCCCGCCAATTTCGAAATTAGCGATGCGCGCGCGTTGCGGTCGCGTAGCGTGTCCGGCCTTAGTTTTTCAAAAATCGGTCATTTTTACCCGATGTCGTCGTGATGAGCGGCGGTTTTTTGGGGCTCTTTTTTAAATATTTTTTTTCAGGTTTAGAAAGATTCTAGAAGACTCTAGCGTCTTCTAAAAGGCTCTGAATGCTAATTCCAGCTCTAGAAACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTAGTCGATTTTSCGGAAATTTTTCTGAAATGTCTGAGAAAATCTTAATTTTCTGAAAATTCCAGATTTTTCTCAGAAAAATATGGTTTTTTTTTGGAGCGAAATCTTTCTTCTTTAGCTCCCCTGCTGCGTGGCACGCGACGCGACCGCTTCGCGCGGGAGGGAATCGCAACCGCGCTCCACCGTACGCGCGGCTTGTCGCGTCGCGGCACGCGCGAAGTTGAAGCATTTGAATTTGTTTCGGTGATATTAAGGGGAAAATTGATCGTTTTGTGACTTTTCGGGTCTTTTTTTCGCGATTTTGTTTGAAAAAGTAGTATAATATGTGGGGAATTCCCTAGTGAATGTTGATTTTAGCAGAAGTTTCCCCGAAAATATAATTTTTTTCGAAAAAAAGAATACTTTTTAGAATTTGTTTGTTTTTGTTTTATCGCAGCAGTTCCCAAAGGATTCCAGAGATTTTCGAAGTTTTCTAAGCACTGGGAATTGCTAATTTTCGAAAAAAAATTTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCTAGAAACTCCTAGTTTTCTCTT</pcr_primer_p1>
		<pcr_primer_p2>AACAAATTCAAATGCTTCAACT</pcr_primer_p2>
		<pcr_amplicon_size>318</pcr_amplicon_size>
		<canonical_amplicon>ACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTAGTCGATTTTGCGGAAATTTTTCTGAAATGTCTGAGAAAATCTTAATTTTCTGAAAATTCCAGATTTTTCTCAGAAAAATATGGTTTTTTTTTGGAGCGAAATCTTTCTTCTTTAGCTCCCCTGCTGCGTGGCACGCGACGCGACCGCTTCGCGCGGGAGGGAATCGCAACCGCGCTCCACCGTACGCGCGGCTTGTCGCGTCGCGGCACGCGCGAAGTTGAAGCATTTGAATTTGTT</canonical_amplicon>
		<polymorphic_amplicon>ACTCTAGAAACTCCTAGTTTTCTCTTAAATTAGTTTTTTGCCGAAAGTTTTCTAAAATCGACCAATTTTTGAGAAAAATTAGTCGATTTTSCGGAAATTTTTCTGAAATGTCTGAGAAAATCTTAATTTTCTGAAAATTCCAGATTTTTCTCAGAAAAATATGGTTTTTTTTTGGAGCGAAATCTTTCTTCTTTAGCTCCCCTGCTGCGTGGCACGCGACGCGACCGCTTCGCGCGGGAGGGAATCGCAACCGCGCTCCACCGTACGCGCGGCTTGTCGCGTCGCGGCACGCGCGAAGTTGAAGCATTTGAATTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38112</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>99908</contig_pos>
        <strand></strand>
        <context>ggggcattga[G/T]agctttaaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGAACATTTTTATTGGTGTTGGTTAGTGGATTTGAATTTGGGGCATTGA</left_flank>
        <right_flank>AGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTGAGTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGGCTCGTTTTGAAGCTCAAAATGCGCCGAAATCAACAATTCCAGATTTTCAGCTCAGGAAATTCCAGAAAATCTGAAAATTCAATTTCAGACGTTCTCTTCATTTTTCTCATCGTTGGACTCATCGTTTTGGGCGTTTTCACCATCAAAAAACGCACTTATTTGACACTAAATTCATGGGAATTGGCTCAAGAAATCGCTGAAAATGCCACGGAGTTGGCAATGGAGAATGGGACTACTGTAGGTGGCTTACGGTGGCCTAGAAATTTCTTTTTCGACATTTCTAGGCCACCATCTCCTCCTGGTGGCCTAGAAAATCTAAGAAACCATTCCTCCTTCTTTTTCAGAACATCGACTTCGCTACCGTACTCTGGAGTGTCGGCGTGGAACTGGTGAATACGGTAAAAGTGTTGGATGGACCACCAAAACGGGATTTTCTGATGATTGTGAACATTTTTATTGGTGTTGGTTAGTGGATTTGAATTTGGGGCATTGAGAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTGAGTTTTCACACTTTAAAGGCGCATAAGGGGCAGGAAATTTGAAAATCCAGGAAAGTAGGTCATGATTATACTCATTTTAAAGCACAAACTTTGACGAATAGGAAAATCGTTGTTTTGTTCAAAAATATTTGCAAAATAAGAAAGTTATGGGGAAAACAAGTTTTTTAGAATTTCCCTAAAATATTTAGTTTGCCTCATAACTTTCTTAAAATCTACAATTTTTGAATGAAACTTAACTTTTCAATTTTTCGCACTATGAGCTTTAAAATAAGTATAATCATGACTAGACTGCGCCCACTTTGAAAATTGAAGACCCCTATGCGCCTTTAAAACCAAATTTAGGAAAATTTCAAAATGGGCGGAACCTAGTCGTGTTTAGGCTTATTTTAAAGCTCTCAACGCGGGAAATTCGAAAATCTAATTTTCTTATAAACGTATTGAAAGTCATCTAAGTTA</canonical>
            <polymorphic>TTTGGGCTCGTTTTGAAGCTCAAAATGCGCCGAAATCAACAATTCCAGATTTTCAGCTCAGGAAATTCCAGAAAATCTGAAAATTCAATTTCAGACGTTCTCTTCATTTTTCTCATCGTTGGACTCATCGTTTTGGGCGTTTTCACCATCAAAAAACGCACTTATTTGACACTAAATTCATGGGAATTGGCTCAAGAAATCGCTGAAAATGCCACGGAGTTGGCAATGGAGAATGGGACTACTGTAGGTGGCTTACGGTGGCCTAGAAATTTCTTTTTCGACATTTCTAGGCCACCATCTCCTCCTGGTGGCCTAGAAAATCTAAGAAACCATTCCTCCTTCTTTTTCAGAACATCGACTTCGCTACCGTACTCTGGAGTGTCGGCGTGGAACTGGTGAATACGGTAAAAGTGTTGGATGGACCACCAAAACGGGATTTTCTGATGATTGTGAACATTTTTATTGGTGTTGGTTAGTGGATTTGAATTTGGGGCATTGAKAGCTTTAAAATGAGCCCAAACACGACTAGGCTCCGCCCACTTTGAGTTTTCACACTTTAAAGGCGCATAAGGGGCAGGAAATTTGAAAATCCAGGAAAGTAGGTCATGATTATACTCATTTTAAAGCACAAACTTTGACGAATAGGAAAATCGTTGTTTTGTTCAAAAATATTTGCAAAATAAGAAAGTTATGGGGAAAACAAGTTTTTTAGAATTTCCCTAAAATATTTAGTTTGCCTCATAACTTTCTTAAAATCTACAATTTTTGAATGAAACTTAACTTTTCAATTTTTCGCACTATGAGCTTTAAAATAAGTATAATCATGACTAGACTGCGCCCACTTTGAAAATTGAAGACCCCTATGCGCCTTTAAAACCAAATTTAGGAAAATTTCAAAATGGGCGGAACCTAGTCGTGTTTAGGCTTATTTTAAAGCTCTCAACGCGGGAAATTCGAAAATCTAATTTTCTTATAAACGTATTGAAAGTCATCTAAGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACGGGATTTTCTGATGATT</pcr_primer_p1>
		<pcr_primer_p2>ACGTACCAGGAGTATTTGTCAT</pcr_primer_p2>
		<pcr_amplicon_size>879</pcr_amplicon_size>
		<canonical_amplicon>AACGGGATTTTCTGATGATTGTGAACATTTTTATTGGTGTTGGTTAGTGGATTTGAATTTGGGGCATTGAGAGCTTTAAAATGAGCCCAAAC</canonical_amplicon>
		<polymorphic_amplicon>AACGGGATTTTCTGATGATTGTGAACATTTTTATTGGTGTTGGTTAGTGGATTTGAATTTGGGGCATTGAKAGCTTTAAAATGAGCCCAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38113</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>158873</contig_pos>
        <strand></strand>
        <context>AGTCAGATTC[G/A]AATTTGGAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTGCAAACCAGTACGGCGGATTTGGAGAGACGACTTCAAGAGTCAGATTC</left_flank>
        <right_flank>AATTTGGAGCGGTTGAAAACGTCGCAATTGGATTTGGCCAATAAATTTGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGCATGAAATTTCCGAAAATTTGATACCCATATTGCCTATATTCCAAGAAATTAAGGAGTTTGAATCCTGAAGACGTCGGAAATTCAGAATACATAATTTTGAGGAATATGGGCAATATGGGTATCAAAATTTCGGAAATTTCATGACAAATCTAGTTCACGTTCTAGATTTTTGAGTTAACCTCGATTTCTTCAAAAAAACGCCTTTTTTAAAAATTTCAGACGCTATCTAATAGCCTAACCGAATCCAAACAACAATGTGATGTTCTCAGAAAGCAATTGATCAATGCAAAAGATGATAAGCACATAATACAGGTTAGTTTTTAGGATTACATTAGTTTTCGTGGTGAGACCCCAAGTGGGCGGAGCCTAGGCATGCTTATACTCATTTTGAAGCTCTTGACGCGAGAAATTCAAAATTTGAGTTTTCAGCAGTATGAAACTAAACTGCAAACCAGTACGGCGGATTTGGAGAGACGACTTCAAGAGTCAGATTCGAATTTGGAGCGGTTGAAAACGTCGCAATTGGATTTGGCCAATAAATTTGAAGAAGCTTCTAGAGAAAATACAGATTTATTGTCGAAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGT</canonical>
            <polymorphic>TTGGCATGAAATTTCCGAAAATTTGATACCCATATTGCCTATATTCCAAGAAATTAAGGAGTTTGAATCCTGAAGACGTCGGAAATTCAGAATACATAATTTTGAGGAATATGGGCAATATGGGTATCAAAATTTCGGAAATTTCATGACAAATCTAGTTCACGTTCTAGATTTTTGAGTTAACCTCGATTTCTTCAAAAAAACGCCTTTTTTAAAAATTTCAGACGCTATCTAATAGCCTAACCGAATCCAAACAACAATGTGATGTTCTCAGAAAGCAATTGATCAATGCAAAAGATGATAAGCACATAATACAGGTTAGTTTTTAGGATTACATTAGTTTTCGTGGTGAGACCCCAAGTGGGCGGAGCCTAGGCATGCTTATACTCATTTTGAAGCTCTTGACGCGAGAAATTCAAAATTTGAGTTTTCAGCAGTATGAAACTAAACTGCAAACCAGTACGGCGGATTTGGAGAGACGACTTCAAGAGTCAGATTCRAATTTGGAGCGGTTGAAAACGTCGCAATTGGATTTGGCCAATAAATTTGAAGAAGCTTCTAGAGAAAATACAGATTTATTGTCGAAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>196 101 81 79 77 75 64 59 47 44 43 41 18 12 12 10 9 9 9 7 7</canonical_bands>
                <polymorphic_bands>196 124 101 79 77 75 64 59 47 44 41 18 12 12 10 9 9 9 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>312 187 132 112 108 84 58 7</canonical_bands>
                <polymorphic_bands>396 187 132 112 108 58 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAAACTAAACTGCAAACCAG</pcr_primer_p1>
		<pcr_primer_p2>CGATTTTCGACAATAAATCTGTA</pcr_primer_p2>
		<pcr_amplicon_size>153</pcr_amplicon_size>
		<canonical_amplicon>ATGAAACTAAACTGCAAACCAGTACGGCGGATTTGGAGAGACGACTTCAAGAGTCAGATTCGAATTTGGAGCGGTTGAAAACGTCGCAATTGGATTTGGCCAATAAATTTGAAGAAGCTTCTAGAGAAAATACAGATTTATTGTCGAAAATCG</canonical_amplicon>
		<polymorphic_amplicon>ATGAAACTAAACTGCAAACCAGTACGGCGGATTTGGAGAGACGACTTCAAGAGTCAGATTCRAATTTGGAGCGGTTGAAAACGTCGCAATTGGATTTGGCCAATAAATTTGAAGAAGCTTCTAGAGAAAATACAGATTTATTGTCGAAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38114</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>158986</contig_pos>
        <strand></strand>
        <context>GTAAAtcatt[C/T]cgttmgttga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAAATACAGATTTATTGTCGAAAATCGATATTTTGCAGGTAAATCATT</left_flank>
        <right_flank>CGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCAATATGGGTATCAAAATTTCGGAAATTTCATGACAAATCTAGTTCACGTTCTAGATTTTTGAGTTAACCTCGATTTCTTCAAAAAAACGCCTTTTTTAAAAATTTCAGACGCTATCTAATAGCCTAACCGAATCCAAACAACAATGTGATGTTCTCAGAAAGCAATTGATCAATGCAAAAGATGATAAGCACATAATACAGGTTAGTTTTTAGGATTACATTAGTTTTCGTGGTGAGACCCCAAGTGGGCGGAGCCTAGGCATGCTTATACTCATTTTGAAGCTCTTGACGCGAGAAATTCAAAATTTGAGTTTTCAGCAGTATGAAACTAAACTGCAAACCAGTACGGCGGATTTGGAGAGACGACTTCAAGAGTCAGATTCGAATTTGGAGCGGTTGAAAACGTCGCAATTGGATTTGGCCAATAAATTTGAAGAAGCTTCTAGAGAAAATACAGATTTATTGTCGAAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAG</canonical>
            <polymorphic>GGCAATATGGGTATCAAAATTTCGGAAATTTCATGACAAATCTAGTTCACGTTCTAGATTTTTGAGTTAACCTCGATTTCTTCAAAAAAACGCCTTTTTTAAAAATTTCAGACGCTATCTAATAGCCTAACCGAATCCAAACAACAATGTGATGTTCTCAGAAAGCAATTGATCAATGCAAAAGATGATAAGCACATAATACAGGTTAGTTTTTAGGATTACATTAGTTTTCGTGGTGAGACCCCAAGTGGGCGGAGCCTAGGCATGCTTATACTCATTTTGAAGCTCTTGACGCGAGAAATTCAAAATTTGAGTTTTCAGCAGTATGAAACTAAACTGCAAACCAGTACGGCGGATTTGGAGAGACGACTTCAAGAGTCAGATTCGAATTTGGAGCGGTTGAAAACGTCGCAATTGGATTTGGCCAATAAATTTGAAGAAGCTTCTAGAGAAAATACAGATTTATTGTCGAAAATCGATATTTTGCAGGTAAATCATTYCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGCCAATAAATTTGAAGAA</pcr_primer_p1>
		<pcr_primer_p2>ACGAAAACTGTTGCGTTAGA</pcr_primer_p2>
		<pcr_amplicon_size>685</pcr_amplicon_size>
		<canonical_amplicon>TGGCCAATAAATTTGAAGAAGCTTCTAGAGAAAATACAGATTTATTGTCGAAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCAT</canonical_amplicon>
		<polymorphic_amplicon>TGGCCAATAAATTTGAAGAAGCTTCTAGAGAAAATACAGATTTATTGTCGAAAATCGATATTTTGCAGGTAAATCATTYCGTTAGTTGAATTTTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38115</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>158991</contig_pos>
        <strand></strand>
        <context>tcattycgtt[A/C]gttgaattty</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATACAGATTTATTGTCGAAAATCGATATTTTGCAGGTAAATCATTCCGTT</left_flank>
        <right_flank>GTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGGGTATCAAAATTTCGGAAATTTCATGACAAATCTAGTTCACGTTCTAGATTTTTGAGTTAACCTCGATTTCTTCAAAAAAACGCCTTTTTTAAAAATTTCAGACGCTATCTAATAGCCTAACCGAATCCAAACAACAATGTGATGTTCTCAGAAAGCAATTGATCAATGCAAAAGATGATAAGCACATAATACAGGTTAGTTTTTAGGATTACATTAGTTTTCGTGGTGAGACCCCAAGTGGGCGGAGCCTAGGCATGCTTATACTCATTTTGAAGCTCTTGACGCGAGAAATTCAAAATTTGAGTTTTCAGCAGTATGAAACTAAACTGCAAACCAGTACGGCGGATTTGGAGAGACGACTTCAAGAGTCAGATTCGAATTTGGAGCGGTTGAAAACGTCGCAATTGGATTTGGCCAATAAATTTGAAGAAGCTTCTAGAGAAAATACAGATTTATTGTCGAAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAGAAGAC</canonical>
            <polymorphic>TATGGGTATCAAAATTTCGGAAATTTCATGACAAATCTAGTTCACGTTCTAGATTTTTGAGTTAACCTCGATTTCTTCAAAAAAACGCCTTTTTTAAAAATTTCAGACGCTATCTAATAGCCTAACCGAATCCAAACAACAATGTGATGTTCTCAGAAAGCAATTGATCAATGCAAAAGATGATAAGCACATAATACAGGTTAGTTTTTAGGATTACATTAGTTTTCGTGGTGAGACCCCAAGTGGGCGGAGCCTAGGCATGCTTATACTCATTTTGAAGCTCTTGACGCGAGAAATTCAAAATTTGAGTTTTCAGCAGTATGAAACTAAACTGCAAACCAGTACGGCGGATTTGGAGAGACGACTTCAAGAGTCAGATTCGAATTTGGAGCGGTTGAAAACGTCGCAATTGGATTTGGCCAATAAATTTGAAGAAGCTTCTAGAGAAAATACAGATTTATTGTCGAAAATCGATATTTTGCAGGTAAATCATTCCGTTMGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAGAAGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGCCAATAAATTTGAAGAA</pcr_primer_p1>
		<pcr_primer_p2>ACGAAAACTGTTGCGTTAGA</pcr_primer_p2>
		<pcr_amplicon_size>685</pcr_amplicon_size>
		<canonical_amplicon>TGGCCAATAAATTTGAAGAAGCTTCTAGAGAAAATACAGATTTATTGTCGAAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAAT</canonical_amplicon>
		<polymorphic_amplicon>TGGCCAATAAATTTGAAGAAGCTTCTAGAGAAAATACAGATTTATTGTCGAAAATCGATATTTTGCAGGTAAATCATTCCGTTMGTTGAATTTTTCATGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38116</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>159001</contig_pos>
        <strand></strand>
        <context>mgttgaattt[T/C]tcatgaaatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTGTCGAAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTT</left_flank>
        <right_flank>TCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTTCGGAAATTTCATGACAAATCTAGTTCACGTTCTAGATTTTTGAGTTAACCTCGATTTCTTCAAAAAAACGCCTTTTTTAAAAATTTCAGACGCTATCTAATAGCCTAACCGAATCCAAACAACAATGTGATGTTCTCAGAAAGCAATTGATCAATGCAAAAGATGATAAGCACATAATACAGGTTAGTTTTTAGGATTACATTAGTTTTCGTGGTGAGACCCCAAGTGGGCGGAGCCTAGGCATGCTTATACTCATTTTGAAGCTCTTGACGCGAGAAATTCAAAATTTGAGTTTTCAGCAGTATGAAACTAAACTGCAAACCAGTACGGCGGATTTGGAGAGACGACTTCAAGAGTCAGATTCGAATTTGGAGCGGTTGAAAACGTCGCAATTGGATTTGGCCAATAAATTTGAAGAAGCTTCTAGAGAAAATACAGATTTATTGTCGAAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAGAAGACGTCAGGAATT</canonical>
            <polymorphic>AAAATTTCGGAAATTTCATGACAAATCTAGTTCACGTTCTAGATTTTTGAGTTAACCTCGATTTCTTCAAAAAAACGCCTTTTTTAAAAATTTCAGACGCTATCTAATAGCCTAACCGAATCCAAACAACAATGTGATGTTCTCAGAAAGCAATTGATCAATGCAAAAGATGATAAGCACATAATACAGGTTAGTTTTTAGGATTACATTAGTTTTCGTGGTGAGACCCCAAGTGGGCGGAGCCTAGGCATGCTTATACTCATTTTGAAGCTCTTGACGCGAGAAATTCAAAATTTGAGTTTTCAGCAGTATGAAACTAAACTGCAAACCAGTACGGCGGATTTGGAGAGACGACTTCAAGAGTCAGATTCGAATTTGGAGCGGTTGAAAACGTCGCAATTGGATTTGGCCAATAAATTTGAAGAAGCTTCTAGAGAAAATACAGATTTATTGTCGAAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTYTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAGAAGACGTCAGGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGCCAATAAATTTGAAGAA</pcr_primer_p1>
		<pcr_primer_p2>ACGAAAACTGTTGCGTTAGA</pcr_primer_p2>
		<pcr_amplicon_size>685</pcr_amplicon_size>
		<canonical_amplicon>TGGCCAATAAATTTGAAGAAGCTTCTAGAGAAAATACAGATTTATTGTCGAAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATT</canonical_amplicon>
		<polymorphic_amplicon>TGGCCAATAAATTTGAAGAAGCTTCTAGAGAAAATACAGATTTATTGTCGAAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTYTCATGAAATTTCCGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38117</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>159044</contig_pos>
        <strand></strand>
        <context>tgcccatatt[C/T]caaaaaaaac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATT</left_flank>
        <right_flank>CAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGAGTTAACCTCGATTTCTTCAAAAAAACGCCTTTTTTAAAAATTTCAGACGCTATCTAATAGCCTAACCGAATCCAAACAACAATGTGATGTTCTCAGAAAGCAATTGATCAATGCAAAAGATGATAAGCACATAATACAGGTTAGTTTTTAGGATTACATTAGTTTTCGTGGTGAGACCCCAAGTGGGCGGAGCCTAGGCATGCTTATACTCATTTTGAAGCTCTTGACGCGAGAAATTCAAAATTTGAGTTTTCAGCAGTATGAAACTAAACTGCAAACCAGTACGGCGGATTTGGAGAGACGACTTCAAGAGTCAGATTCGAATTTGGAGCGGTTGAAAACGTCGCAATTGGATTTGGCCAATAAATTTGAAGAAGCTTCTAGAGAAAATACAGATTTATTGTCGAAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAGAAGACGTCAGGAATTCAGAATTTCTGAATTTCTTGTAATATGCACAATATGGGTGTCA</canonical>
            <polymorphic>TTTTTGAGTTAACCTCGATTTCTTCAAAAAAACGCCTTTTTTAAAAATTTCAGACGCTATCTAATAGCCTAACCGAATCCAAACAACAATGTGATGTTCTCAGAAAGCAATTGATCAATGCAAAAGATGATAAGCACATAATACAGGTTAGTTTTTAGGATTACATTAGTTTTCGTGGTGAGACCCCAAGTGGGCGGAGCCTAGGCATGCTTATACTCATTTTGAAGCTCTTGACGCGAGAAATTCAAAATTTGAGTTTTCAGCAGTATGAAACTAAACTGCAAACCAGTACGGCGGATTTGGAGAGACGACTTCAAGAGTCAGATTCGAATTTGGAGCGGTTGAAAACGTCGCAATTGGATTTGGCCAATAAATTTGAAGAAGCTTCTAGAGAAAATACAGATTTATTGTCGAAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTYCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAGAAGACGTCAGGAATTCAGAATTTCTGAATTTCTTGTAATATGCACAATATGGGTGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCGATATTTTGCAGGTAA</pcr_primer_p1>
		<pcr_primer_p2>ACGAAAACTGTTGCGTTAGA</pcr_primer_p2>
		<pcr_amplicon_size>635</pcr_amplicon_size>
		<canonical_amplicon>AAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCT</canonical_amplicon>
		<polymorphic_amplicon>AAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTYCAAAAAAAACTGAAATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38118</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>159075</contig_pos>
        <strand></strand>
        <context>aatttgacgt[A/C]ttctgaatac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGT</left_flank>
        <right_flank>TTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTAGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGCCTTTTTTAAAAATTTCAGACGCTATCTAATAGCCTAACCGAATCCAAACAACAATGTGATGTTCTCAGAAAGCAATTGATCAATGCAAAAGATGATAAGCACATAATACAGGTTAGTTTTTAGGATTACATTAGTTTTCGTGGTGAGACCCCAAGTGGGCGGAGCCTAGGCATGCTTATACTCATTTTGAAGCTCTTGACGCGAGAAATTCAAAATTTGAGTTTTCAGCAGTATGAAACTAAACTGCAAACCAGTACGGCGGATTTGGAGAGACGACTTCAAGAGTCAGATTCGAATTTGGAGCGGTTGAAAACGTCGCAATTGGATTTGGCCAATAAATTTGAAGAAGCTTCTAGAGAAAATACAGATTTATTGTCGAAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAGAAGACGTCAGGAATTCAGAATTTCTGAATTTCTTGTAATATGCACAATATGGGTGTCAAAATTTTTGAAATTTCAAGCCAAATTCATCT</canonical>
            <polymorphic>ACGCCTTTTTTAAAAATTTCAGACGCTATCTAATAGCCTAACCGAATCCAAACAACAATGTGATGTTCTCAGAAAGCAATTGATCAATGCAAAAGATGATAAGCACATAATACAGGTTAGTTTTTAGGATTACATTAGTTTTCGTGGTGAGACCCCAAGTGGGCGGAGCCTAGGCATGCTTATACTCATTTTGAAGCTCTTGACGCGAGAAATTCAAAATTTGAGTTTTCAGCAGTATGAAACTAAACTGCAAACCAGTACGGCGGATTTGGAGAGACGACTTCAAGAGTCAGATTCGAATTTGGAGCGGTTGAAAACGTCGCAATTGGATTTGGCCAATAAATTTGAAGAAGCTTCTAGAGAAAATACAGATTTATTGTCGAAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTMTTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAGAAGACGTCAGGAATTCAGAATTTCTGAATTTCTTGTAATATGCACAATATGGGTGTCAAAATTTTTGAAATTTCAAGCCAAATTCATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCGATATTTTGCAGGTAA</pcr_primer_p1>
		<pcr_primer_p2>ACGAAAACTGTTGCGTTAGA</pcr_primer_p2>
		<pcr_amplicon_size>635</pcr_amplicon_size>
		<canonical_amplicon>AAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCT</canonical_amplicon>
		<polymorphic_amplicon>AAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTMTTCTGAATACTGGATTCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38119</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>159096</contig_pos>
        <strand></strand>
        <context>tggattcctc[G/A]attttcagta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTC</left_flank>
        <right_flank>ATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACGCTATCTAATAGCCTAACCGAATCCAAACAACAATGTGATGTTCTCAGAAAGCAATTGATCAATGCAAAAGATGATAAGCACATAATACAGGTTAGTTTTTAGGATTACATTAGTTTTCGTGGTGAGACCCCAAGTGGGCGGAGCCTAGGCATGCTTATACTCATTTTGAAGCTCTTGACGCGAGAAATTCAAAATTTGAGTTTTCAGCAGTATGAAACTAAACTGCAAACCAGTACGGCGGATTTGGAGAGACGACTTCAAGAGTCAGATTCGAATTTGGAGCGGTTGAAAACGTCGCAATTGGATTTGGCCAATAAATTTGAAGAAGCTTCTAGAGAAAATACAGATTTATTGTCGAAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAGAAGACGTCAGGAATTCAGAATTTCTGAATTTCTTGTAATATGCACAATATGGGTGTCAAAATTTTTGAAATTTCAAGCCAAATTCATCTAACGCAACAGTTTTCGTCTAA</canonical>
            <polymorphic>GACGCTATCTAATAGCCTAACCGAATCCAAACAACAATGTGATGTTCTCAGAAAGCAATTGATCAATGCAAAAGATGATAAGCACATAATACAGGTTAGTTTTTAGGATTACATTAGTTTTCGTGGTGAGACCCCAAGTGGGCGGAGCCTAGGCATGCTTATACTCATTTTGAAGCTCTTGACGCGAGAAATTCAAAATTTGAGTTTTCAGCAGTATGAAACTAAACTGCAAACCAGTACGGCGGATTTGGAGAGACGACTTCAAGAGTCAGATTCGAATTTGGAGCGGTTGAAAACGTCGCAATTGGATTTGGCCAATAAATTTGAAGAAGCTTCTAGAGAAAATACAGATTTATTGTCGAAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCRATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAGAAGACGTCAGGAATTCAGAATTTCTGAATTTCTTGTAATATGCACAATATGGGTGTCAAAATTTTTGAAATTTCAAGCCAAATTCATCTAACGCAACAGTTTTCGTCTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>335 276 132 108 84 58 7</canonical_bands>
                <polymorphic_bands>335 276 190 108 84 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATCGATATTTTGCAGGTAA</pcr_primer_p1>
		<pcr_primer_p2>ACGAAAACTGTTGCGTTAGA</pcr_primer_p2>
		<pcr_amplicon_size>635</pcr_amplicon_size>
		<canonical_amplicon>AAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAGAAGACGTCAGGAATTCAGAATTTCTGAATTTCTTGTAATATGCACAATATGGGTGTCAAAATTTTTGAAATTTCAAGCCAAATTCATCTAACGCAACAGTTTTCGT</canonical_amplicon>
		<polymorphic_amplicon>AAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCRATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAGAAGACGTCAGGAATTCAGAATTTCTGAATTTCTTGTAATATGCACAATATGGGTGTCAAAATTTTTGAAATTTCAAGCCAAATTCATCTAACGCAACAGTTTTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38120</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>159114</contig_pos>
        <strand></strand>
        <context>gtaaaaattc[A/T]tgacgttrga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTC</left_flank>
        <right_flank>TGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCGAATCCAAACAACAATGTGATGTTCTCAGAAAGCAATTGATCAATGCAAAAGATGATAAGCACATAATACAGGTTAGTTTTTAGGATTACATTAGTTTTCGTGGTGAGACCCCAAGTGGGCGGAGCCTAGGCATGCTTATACTCATTTTGAAGCTCTTGACGCGAGAAATTCAAAATTTGAGTTTTCAGCAGTATGAAACTAAACTGCAAACCAGTACGGCGGATTTGGAGAGACGACTTCAAGAGTCAGATTCGAATTTGGAGCGGTTGAAAACGTCGCAATTGGATTTGGCCAATAAATTTGAAGAAGCTTCTAGAGAAAATACAGATTTATTGTCGAAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAGAAGACGTCAGGAATTCAGAATTTCTGAATTTCTTGTAATATGCACAATATGGGTGTCAAAATTTTTGAAATTTCAAGCCAAATTCATCTAACGCAACAGTTTTCGTCTAAATTCCTAAAAAGAAACTG</canonical>
            <polymorphic>AACCGAATCCAAACAACAATGTGATGTTCTCAGAAAGCAATTGATCAATGCAAAAGATGATAAGCACATAATACAGGTTAGTTTTTAGGATTACATTAGTTTTCGTGGTGAGACCCCAAGTGGGCGGAGCCTAGGCATGCTTATACTCATTTTGAAGCTCTTGACGCGAGAAATTCAAAATTTGAGTTTTCAGCAGTATGAAACTAAACTGCAAACCAGTACGGCGGATTTGGAGAGACGACTTCAAGAGTCAGATTCGAATTTGGAGCGGTTGAAAACGTCGCAATTGGATTTGGCCAATAAATTTGAAGAAGCTTCTAGAGAAAATACAGATTTATTGTCGAAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCWTGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAGAAGACGTCAGGAATTCAGAATTTCTGAATTTCTTGTAATATGCACAATATGGGTGTCAAAATTTTTGAAATTTCAAGCCAAATTCATCTAACGCAACAGTTTTCGTCTAAATTCCTAAAAAGAAACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 388 110</canonical_bands>
                <polymorphic_bands>612 388</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 253 136 110</canonical_bands>
                <polymorphic_bands>611 253 136</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATCGATATTTTGCAGGTAA</pcr_primer_p1>
		<pcr_primer_p2>ACGAAAACTGTTGCGTTAGA</pcr_primer_p2>
		<pcr_amplicon_size>635</pcr_amplicon_size>
		<canonical_amplicon>AAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAGAAGACGTCAGGAATTCAGAATTTCTGAATTTCTTGTAATATGCACAATATGGGTGTCAAAATTTTTGAAATTTCAAGCCAAATTCATCTAACGCAACAGTTTTCGT</canonical_amplicon>
		<polymorphic_amplicon>AAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCWTGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAGAAGACGTCAGGAATTCAGAATTTCTGAATTTCTTGTAATATGCACAATATGGGTGTCAAAATTTTTGAAATTTCAAGCCAAATTCATCTAACGCAACAGTTTTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38121</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>159122</contig_pos>
        <strand></strand>
        <context>tcwtgacgtt[A/G]gatgaattcg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTT</left_flank>
        <right_flank>GATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAACAACAATGTGATGTTCTCAGAAAGCAATTGATCAATGCAAAAGATGATAAGCACATAATACAGGTTAGTTTTTAGGATTACATTAGTTTTCGTGGTGAGACCCCAAGTGGGCGGAGCCTAGGCATGCTTATACTCATTTTGAAGCTCTTGACGCGAGAAATTCAAAATTTGAGTTTTCAGCAGTATGAAACTAAACTGCAAACCAGTACGGCGGATTTGGAGAGACGACTTCAAGAGTCAGATTCGAATTTGGAGCGGTTGAAAACGTCGCAATTGGATTTGGCCAATAAATTTGAAGAAGCTTCTAGAGAAAATACAGATTTATTGTCGAAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAGAAGACGTCAGGAATTCAGAATTTCTGAATTTCTTGTAATATGCACAATATGGGTGTCAAAATTTTTGAAATTTCAAGCCAAATTCATCTAACGCAACAGTTTTCGTCTAAATTCCTAAAAAGAAACTGAAACTCTA</canonical>
            <polymorphic>CCAAACAACAATGTGATGTTCTCAGAAAGCAATTGATCAATGCAAAAGATGATAAGCACATAATACAGGTTAGTTTTTAGGATTACATTAGTTTTCGTGGTGAGACCCCAAGTGGGCGGAGCCTAGGCATGCTTATACTCATTTTGAAGCTCTTGACGCGAGAAATTCAAAATTTGAGTTTTCAGCAGTATGAAACTAAACTGCAAACCAGTACGGCGGATTTGGAGAGACGACTTCAAGAGTCAGATTCGAATTTGGAGCGGTTGAAAACGTCGCAATTGGATTTGGCCAATAAATTTGAAGAAGCTTCTAGAGAAAATACAGATTTATTGTCGAAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTRGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAGAAGACGTCAGGAATTCAGAATTTCTGAATTTCTTGTAATATGCACAATATGGGTGTCAAAATTTTTGAAATTTCAAGCCAAATTCATCTAACGCAACAGTTTTCGTCTAAATTCCTAAAAAGAAACTGAAACTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCGATATTTTGCAGGTAA</pcr_primer_p1>
		<pcr_primer_p2>ACGAAAACTGTTGCGTTAGA</pcr_primer_p2>
		<pcr_amplicon_size>635</pcr_amplicon_size>
		<canonical_amplicon>AAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAGAAGACGTCAGGAATTCAGAATTTCTGAATTTCTTGTAATATGCACAATATGGGTGTCAAAATTTTTGAAATTTCAAGCCAAATTCATCTAACGCAACAGTTTTCGT</canonical_amplicon>
		<polymorphic_amplicon>AAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTRGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAGAAGACGTCAGGAATTCAGAATTTCTGAATTTCTTGTAATATGCACAATATGGGTGTCAAAATTTTTGAAATTTCAAGCCAAATTCATCTAACGCAACAGTTTTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38122</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>159187</contig_pos>
        <strand></strand>
        <context>aaaaaatgtt[A/G]gtattctgaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTT</left_flank>
        <right_flank>GTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGGTTAGTTTTTAGGATTACATTAGTTTTCGTGGTGAGACCCCAAGTGGGCGGAGCCTAGGCATGCTTATACTCATTTTGAAGCTCTTGACGCGAGAAATTCAAAATTTGAGTTTTCAGCAGTATGAAACTAAACTGCAAACCAGTACGGCGGATTTGGAGAGACGACTTCAAGAGTCAGATTCGAATTTGGAGCGGTTGAAAACGTCGCAATTGGATTTGGCCAATAAATTTGAAGAAGCTTCTAGAGAAAATACAGATTTATTGTCGAAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAGAAGACGTCAGGAATTCAGAATTTCTGAATTTCTTGTAATATGCACAATATGGGTGTCAAAATTTTTGAAATTTCAAGCCAAATTCATCTAACGCAACAGTTTTCGTCTAAATTCCTAAAAAGAAACTGAAACTCTAAATTCTGAAGAGGTTAAAAATCTGAAAATGAAATTTCCAGGACACTCTAAGCCTAGAAGAAGACC</canonical>
            <polymorphic>CAGGTTAGTTTTTAGGATTACATTAGTTTTCGTGGTGAGACCCCAAGTGGGCGGAGCCTAGGCATGCTTATACTCATTTTGAAGCTCTTGACGCGAGAAATTCAAAATTTGAGTTTTCAGCAGTATGAAACTAAACTGCAAACCAGTACGGCGGATTTGGAGAGACGACTTCAAGAGTCAGATTCGAATTTGGAGCGGTTGAAAACGTCGCAATTGGATTTGGCCAATAAATTTGAAGAAGCTTCTAGAGAAAATACAGATTTATTGTCGAAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTRGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAGAAGACGTCAGGAATTCAGAATTTCTGAATTTCTTGTAATATGCACAATATGGGTGTCAAAATTTTTGAAATTTCAAGCCAAATTCATCTAACGCAACAGTTTTCGTCTAAATTCCTAAAAAGAAACTGAAACTCTAAATTCTGAAGAGGTTAAAAATCTGAAAATGAAATTTCCAGGACACTCTAAGCCTAGAAGAAGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCGATATTTTGCAGGTAA</pcr_primer_p1>
		<pcr_primer_p2>ACGAAAACTGTTGCGTTAGA</pcr_primer_p2>
		<pcr_amplicon_size>635</pcr_amplicon_size>
		<canonical_amplicon>AAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAGAAGACGTCAGGAATTCAGAATTTCTGAATTTCTTGTAATATGCACAATATGGGTGTCAAAATTTTTGAAATTTCAAGCCAAATTCATCTAACGCAACAGTTTTCGT</canonical_amplicon>
		<polymorphic_amplicon>AAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTRGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAGAAGACGTCAGGAATTCAGAATTTCTGAATTTCTTGTAATATGCACAATATGGGTGTCAAAATTTTTGAAATTTCAAGCCAAATTCATCTAACGCAACAGTTTTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38123</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>159237</contig_pos>
        <strand></strand>
        <context>aaagtttctc[C/T]taatatatag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTC</left_flank>
        <right_flank>TAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAAT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGGAGCCTAGGCATGCTTATACTCATTTTGAAGCTCTTGACGCGAGAAATTCAAAATTTGAGTTTTCAGCAGTATGAAACTAAACTGCAAACCAGTACGGCGGATTTGGAGAGACGACTTCAAGAGTCAGATTCGAATTTGGAGCGGTTGAAAACGTCGCAATTGGATTTGGCCAATAAATTTGAAGAAGCTTCTAGAGAAAATACAGATTTATTGTCGAAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAGAAGACGTCAGGAATTCAGAATTTCTGAATTTCTTGTAATATGCACAATATGGGTGTCAAAATTTTTGAAATTTCAAGCCAAATTCATCTAACGCAACAGTTTTCGTCTAAATTCCTAAAAAGAAACTGAAACTCTAAATTCTGAAGAGGTTAAAAATCTGAAAATGAAATTTCCAGGACACTCTAAGCCTAGAAGAAGACCGAAGAAAGTTATGTGAAGAACAAATTGAGAGGCTAAAAGGAGTTGAAAGT</canonical>
            <polymorphic>GCGGAGCCTAGGCATGCTTATACTCATTTTGAAGCTCTTGACGCGAGAAATTCAAAATTTGAGTTTTCAGCAGTATGAAACTAAACTGCAAACCAGTACGGCGGATTTGGAGAGACGACTTCAAGAGTCAGATTCGAATTTGGAGCGGTTGAAAACGTCGCAATTGGATTTGGCCAATAAATTTGAAGAAGCTTCTAGAGAAAATACAGATTTATTGTCGAAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCYTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAGAAGACGTCAGGAATTCAGAATTTCTGAATTTCTTGTAATATGCACAATATGGGTGTCAAAATTTTTGAAATTTCAAGCCAAATTCATCTAACGCAACAGTTTTCGTCTAAATTCCTAAAAAGAAACTGAAACTCTAAATTCTGAAGAGGTTAAAAATCTGAAAATGAAATTTCCAGGACACTCTAAGCCTAGAAGAAGACCGAAGAAAGTTATGTGAAGAACAAATTGAGAGGCTAAAAGGAGTTGAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCGATATTTTGCAGGTAA</pcr_primer_p1>
		<pcr_primer_p2>ACGAAAACTGTTGCGTTAGA</pcr_primer_p2>
		<pcr_amplicon_size>635</pcr_amplicon_size>
		<canonical_amplicon>AAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAGAAGACGTCAGGAATTCAGAATTTCTGAATTTCTTGTAATATGCACAATATGGGTGTCAAAATTTTTGAAATTTCAAGCCAAATTCATCTAACGCAACAGTTTTCGT</canonical_amplicon>
		<polymorphic_amplicon>AAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCYTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAGAAGACGTCAGGAATTCAGAATTTCTGAATTTCTTGTAATATGCACAATATGGGTGTCAAAATTTTTGAAATTTCAAGCCAAATTCATCTAACGCAACAGTTTTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38124</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>159258</contig_pos>
        <strand></strand>
        <context>gcaatatggg[T/A]atcgaactct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGG</left_flank>
        <right_flank>ATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCATTTTGAAGCTCTTGACGCGAGAAATTCAAAATTTGAGTTTTCAGCAGTATGAAACTAAACTGCAAACCAGTACGGCGGATTTGGAGAGACGACTTCAAGAGTCAGATTCGAATTTGGAGCGGTTGAAAACGTCGCAATTGGATTTGGCCAATAAATTTGAAGAAGCTTCTAGAGAAAATACAGATTTATTGTCGAAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAGAAGACGTCAGGAATTCAGAATTTCTGAATTTCTTGTAATATGCACAATATGGGTGTCAAAATTTTTGAAATTTCAAGCCAAATTCATCTAACGCAACAGTTTTCGTCTAAATTCCTAAAAAGAAACTGAAACTCTAAATTCTGAAGAGGTTAAAAATCTGAAAATGAAATTTCCAGGACACTCTAAGCCTAGAAGAAGACCGAAGAAAGTTATGTGAAGAACAAATTGAGAGGCTAAAAGGAGTTGAAAGTTTTGTGGAAAGTTCCAGCCAG</canonical>
            <polymorphic>ACTCATTTTGAAGCTCTTGACGCGAGAAATTCAAAATTTGAGTTTTCAGCAGTATGAAACTAAACTGCAAACCAGTACGGCGGATTTGGAGAGACGACTTCAAGAGTCAGATTCGAATTTGGAGCGGTTGAAAACGTCGCAATTGGATTTGGCCAATAAATTTGAAGAAGCTTCTAGAGAAAATACAGATTTATTGTCGAAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGWATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAGAAGACGTCAGGAATTCAGAATTTCTGAATTTCTTGTAATATGCACAATATGGGTGTCAAAATTTTTGAAATTTCAAGCCAAATTCATCTAACGCAACAGTTTTCGTCTAAATTCCTAAAAAGAAACTGAAACTCTAAATTCTGAAGAGGTTAAAAATCTGAAAATGAAATTTCCAGGACACTCTAAGCCTAGAAGAAGACCGAAGAAAGTTATGTGAAGAACAAATTGAGAGGCTAAAAGGAGTTGAAAGTTTTGTGGAAAGTTCCAGCCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCGATATTTTGCAGGTAA</pcr_primer_p1>
		<pcr_primer_p2>ACGAAAACTGTTGCGTTAGA</pcr_primer_p2>
		<pcr_amplicon_size>635</pcr_amplicon_size>
		<canonical_amplicon>AAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGTATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAGAAGACGTCAGGAATTCAGAATTTCTGAATTTCTTGTAATATGCACAATATGGGTGTCAAAATTTTTGAAATTTCAAGCCAAATTCATCTAACGCAACAGTTTTCGT</canonical_amplicon>
		<polymorphic_amplicon>AAAATCGATATTTTGCAGGTAAATCATTCCGTTAGTTGAATTTTTCATGAAATTTCCGAAATTTTGATACCCATATTGCCCATATTCCAAAAAAAACTGAAATTCTGAATTTGACGTATTCTGAATACTGGATTCCTCGATTTTCAGTAAAAATTCATGACGTTAGATGAATTCGGTTTGAAATTCCCGACATTTCGATACCCATATTGCCTATATTCCAAAAAATGTTAGTATTCTGAATCTTGAAGGCGTCAAGAATTCAGAATCCCAAAGTTTCTCCTAATATATAGGCAATATGGGWATCGAACTCTCTGAAATTTTGAGCTAAATAAGTTTAACGAAACACTTTTTTGATCCGAAATATGATTTTTTGGTTTTCGGAGGATGTTGAAAAATTGACGTCTTCTGAATACAGTATTCTTCAATTTTCAGTAAAAATTCACGACGTTAGCTAAGATTTTCATCAAATTTCGGAAATTTTGATACCCATATTGACCATATTCAGGAAGTTCCGAGATTCTGAATCCAGAAGACGTCAGGAATTCAGAATTTCTGAATTTCTTGTAATATGCACAATATGGGTGTCAAAATTTTTGAAATTTCAAGCCAAATTCATCTAACGCAACAGTTTTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38125</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>162972</contig_pos>
        <strand></strand>
        <context>actaaaaacg[G/A]cataacttcc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACG</left_flank>
        <right_flank>CATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTCAGACAAGTGC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGAAAAAAAAAATTTTTAATTCAAATGTTGTGATTTTTTCAGAATCATCCAACACTACGCTCTCCGAGAAGAAGCATCGCTTCTGATGCCTTCTGAAGAATCCATGGAAAGGGTAAGATTTTGAATTTTTGAAAAAAAACACTTTCAAAAGAAGAACAATATTTTTTTAGCTTTTCGCAAGTTGCGAATTTGTTCAAGTAAGTTGTGAAGATGTTGTGATTGTGAGAAAAAGAGCGATAAATTTGAATTTGAGAGGTTGAGAGCTTCAAAATGAGTACCCACAAGCCTATGTTCCTTTAAATTTGAAATGTCGGGTTTAAAGGCGCATAGGGGTCCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGGCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTCAGACAAGTGCTAATTTGGAGTTGAGCTTCAAATTGAGTATAACCATCACCTACTTTTAGCATTTTCGAAAATTGGGACCCCCTTTGCGCCTTTAAATGTTTTCCAACTTAAAGAAAAACAGTCATGTTTATACTCATTTTAAAGCTCGAAACGCGCCAAATGCAAAATTGTCAAAGTTTTTTAGCTTGAACGAAAATTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTT</canonical>
            <polymorphic>ATTTGAAAAAAAAAATTTTTAATTCAAATGTTGTGATTTTTTCAGAATCATCCAACACTACGCTCTCCGAGAAGAAGCATCGCTTCTGATGCCTTCTGAAGAATCCATGGAAAGGGTAAGATTTTGAATTTTTGAAAAAAAACACTTTCAAAAGAAGAACAATATTTTTTTAGCTTTTCGCAAGTTGCGAATTTGTTCAAGTAAGTTGTGAAGATGTTGTGATTGTGAGAAAAAGAGCGATAAATTTGAATTTGAGAGGTTGAGAGCTTCAAAATGAGTACCCACAAGCCTATGTTCCTTTAAATTTGAAATGTCGGGTTTAAAGGCGCATAGGGGTCCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGRCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTCAGACAAGTGCTAATTTGGAGTTGAGCTTCAAATTGAGTATAACCATCACCTACTTTTAGCATTTTCGAAAATTGGGACCCCCTTTGCGCCTTTAAATGTTTTCCAACTTAAAGAAAAACAGTCATGTTTATACTCATTTTAAAGCTCGAAACGCGCCAAATGCAAAATTGTCAAAGTTTTTTAGCTTGAACGAAAATTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTAAGTTGTGAAGATGTTGTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTGATGTTTGGTGTGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>896</pcr_amplicon_size>
		<canonical_amplicon>AAGTAAGTTGTGAAGATGTTGTGATTGTGAGAAAAAGAGCGATAAATTTGAATTTGAGAGGTTGAGAGCTTCAAAATGAGTACCCACAAGCCTATGTTCCTTTAAATTTGAAATGTCGGGTTTAAAGGCGCATAGGGGTCCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGGCATAACTTCCTTCATTTTT</canonical_amplicon>
		<polymorphic_amplicon>AAGTAAGTTGTGAAGATGTTGTGATTGTGAGAAAAAGAGCGATAAATTTGAATTTGAGAGGTTGAGAGCTTCAAAATGAGTACCCACAAGCCTATGTTCCTTTAAATTTGAAATGTCGGGTTTAAAGGCGCATAGGGGTCCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGRCATAACTTCCTTCATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38126</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>163012</contig_pos>
        <strand></strand>
        <context>aatgcatttt[C/T]agacaagtgc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTAAAAACGGCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTT</left_flank>
        <right_flank>AGACAAGTGCTAATTTGGAGTTGAGCTTCAAATTGAGTATAACCATCACC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAGAATCATCCAACACTACGCTCTCCGAGAAGAAGCATCGCTTCTGATGCCTTCTGAAGAATCCATGGAAAGGGTAAGATTTTGAATTTTTGAAAAAAAACACTTTCAAAAGAAGAACAATATTTTTTTAGCTTTTCGCAAGTTGCGAATTTGTTCAAGTAAGTTGTGAAGATGTTGTGATTGTGAGAAAAAGAGCGATAAATTTGAATTTGAGAGGTTGAGAGCTTCAAAATGAGTACCCACAAGCCTATGTTCCTTTAAATTTGAAATGTCGGGTTTAAAGGCGCATAGGGGTCCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGGCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTCAGACAAGTGCTAATTTGGAGTTGAGCTTCAAATTGAGTATAACCATCACCTACTTTTAGCATTTTCGAAAATTGGGACCCCCTTTGCGCCTTTAAATGTTTTCCAACTTAAAGAAAAACAGTCATGTTTATACTCATTTTAAAGCTCGAAACGCGCCAAATGCAAAATTGTCAAAGTTTTTTAGCTTGAACGAAAATTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAG</canonical>
            <polymorphic>TTCAGAATCATCCAACACTACGCTCTCCGAGAAGAAGCATCGCTTCTGATGCCTTCTGAAGAATCCATGGAAAGGGTAAGATTTTGAATTTTTGAAAAAAAACACTTTCAAAAGAAGAACAATATTTTTTTAGCTTTTCGCAAGTTGCGAATTTGTTCAAGTAAGTTGTGAAGATGTTGTGATTGTGAGAAAAAGAGCGATAAATTTGAATTTGAGAGGTTGAGAGCTTCAAAATGAGTACCCACAAGCCTATGTTCCTTTAAATTTGAAATGTCGGGTTTAAAGGCGCATAGGGGTCCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGGCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTYAGACAAGTGCTAATTTGGAGTTGAGCTTCAAATTGAGTATAACCATCACCTACTTTTAGCATTTTCGAAAATTGGGACCCCCTTTGCGCCTTTAAATGTTTTCCAACTTAAAGAAAAACAGTCATGTTTATACTCATTTTAAAGCTCGAAACGCGCCAAATGCAAAATTGTCAAAGTTTTTTAGCTTGAACGAAAATTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>499 242 111 91 24 19 10 4</canonical_bands>
                <polymorphic_bands>610 242 91 24 19 10 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTAAGTTGTGAAGATGTTGTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTGATGTTTGGTGTGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>896</pcr_amplicon_size>
		<canonical_amplicon>AAGTAAGTTGTGAAGATGTTGTGATTGTGAGAAAAAGAGCGATAAATTTGAATTTGAGAGGTTGAGAGCTTCAAAATGAGTACCCACAAGCCTATGTTCCTTTAAATTTGAAATGTCGGGTTTAAAGGCGCATAGGGGTCCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGGCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTCAGACAAGTGCTAATTTGGA</canonical_amplicon>
		<polymorphic_amplicon>AAGTAAGTTGTGAAGATGTTGTGATTGTGAGAAAAAGAGCGATAAATTTGAATTTGAGAGGTTGAGAGCTTCAAAATGAGTACCCACAAGCCTATGTTCCTTTAAATTTGAAATGTCGGGTTTAAAGGCGCATAGGGGTCCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGGCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTYAGACAAGTGCTAATTTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38127</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>163033</contig_pos>
        <strand></strand>
        <context>taatttggag[T/C]tgagcttcaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCATTTTTGCTCGAATGCAATGCATTTTCAGACAAGTGCTAATTTGGAG</left_flank>
        <right_flank>TGAGCTTCAAATTGAGTATAACCATCACCTACTTTTAGCATTTTCGAAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCTCCGAGAAGAAGCATCGCTTCTGATGCCTTCTGAAGAATCCATGGAAAGGGTAAGATTTTGAATTTTTGAAAAAAAACACTTTCAAAAGAAGAACAATATTTTTTTAGCTTTTCGCAAGTTGCGAATTTGTTCAAGTAAGTTGTGAAGATGTTGTGATTGTGAGAAAAAGAGCGATAAATTTGAATTTGAGAGGTTGAGAGCTTCAAAATGAGTACCCACAAGCCTATGTTCCTTTAAATTTGAAATGTCGGGTTTAAAGGCGCATAGGGGTCCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGGCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTCAGACAAGTGCTAATTTGGAGTTGAGCTTCAAATTGAGTATAACCATCACCTACTTTTAGCATTTTCGAAAATTGGGACCCCCTTTGCGCCTTTAAATGTTTTCCAACTTAAAGAAAAACAGTCATGTTTATACTCATTTTAAAGCTCGAAACGCGCCAAATGCAAAATTGTCAAAGTTTTTTAGCTTGAACGAAAATTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGAT</canonical>
            <polymorphic>GCTCTCCGAGAAGAAGCATCGCTTCTGATGCCTTCTGAAGAATCCATGGAAAGGGTAAGATTTTGAATTTTTGAAAAAAAACACTTTCAAAAGAAGAACAATATTTTTTTAGCTTTTCGCAAGTTGCGAATTTGTTCAAGTAAGTTGTGAAGATGTTGTGATTGTGAGAAAAAGAGCGATAAATTTGAATTTGAGAGGTTGAGAGCTTCAAAATGAGTACCCACAAGCCTATGTTCCTTTAAATTTGAAATGTCGGGTTTAAAGGCGCATAGGGGTCCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGGCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTCAGACAAGTGCTAATTTGGAGYTGAGCTTCAAATTGAGTATAACCATCACCTACTTTTAGCATTTTCGAAAATTGGGACCCCCTTTGCGCCTTTAAATGTTTTCCAACTTAAAGAAAAACAGTCATGTTTATACTCATTTTAAAGCTCGAAACGCGCCAAATGCAAAATTGTCAAAGTTTTTTAGCTTGAACGAAAATTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTAAGTTGTGAAGATGTTGTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTGATGTTTGGTGTGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>896</pcr_amplicon_size>
		<canonical_amplicon>AAGTAAGTTGTGAAGATGTTGTGATTGTGAGAAAAAGAGCGATAAATTTGAATTTGAGAGGTTGAGAGCTTCAAAATGAGTACCCACAAGCCTATGTTCCTTTAAATTTGAAATGTCGGGTTTAAAGGCGCATAGGGGTCCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGGCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTCAGACAAGTGCTAATTTGGAGTTGAGCTTCAAATTGAGTAT</canonical_amplicon>
		<polymorphic_amplicon>AAGTAAGTTGTGAAGATGTTGTGATTGTGAGAAAAAGAGCGATAAATTTGAATTTGAGAGGTTGAGAGCTTCAAAATGAGTACCCACAAGCCTATGTTCCTTTAAATTTGAAATGTCGGGTTTAAAGGCGCATAGGGGTCCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGGCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTCAGACAAGTGCTAATTTGGAGYTGAGCTTCAAATTGAGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38128</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>163100</contig_pos>
        <strand></strand>
        <context>ccccctttgc[G/A]cctttaaatg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TATAACCATCACCTACTTTTAGCATTTTCGAAAATTGGGACCCCCTTTGC</left_flank>
        <right_flank>CCTTTAAATGTTTTCCAACTTAAAGAAAAACAGTCATGTTTATACTCATT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTGAAAAAAAACACTTTCAAAAGAAGAACAATATTTTTTTAGCTTTTCGCAAGTTGCGAATTTGTTCAAGTAAGTTGTGAAGATGTTGTGATTGTGAGAAAAAGAGCGATAAATTTGAATTTGAGAGGTTGAGAGCTTCAAAATGAGTACCCACAAGCCTATGTTCCTTTAAATTTGAAATGTCGGGTTTAAAGGCGCATAGGGGTCCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGGCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTCAGACAAGTGCTAATTTGGAGTTGAGCTTCAAATTGAGTATAACCATCACCTACTTTTAGCATTTTCGAAAATTGGGACCCCCTTTGCGCCTTTAAATGTTTTCCAACTTAAAGAAAAACAGTCATGTTTATACTCATTTTAAAGCTCGAAACGCGCCAAATGCAAAATTGTCAAAGTTTTTTAGCTTGAACGAAAATTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGATACCATGGTCCCTGTGAACACACCAAACATCAAACCTGACTTTTCCAAAAATAAAAATTCTTTTAAAA</canonical>
            <polymorphic>TTTTTGAAAAAAAACACTTTCAAAAGAAGAACAATATTTTTTTAGCTTTTCGCAAGTTGCGAATTTGTTCAAGTAAGTTGTGAAGATGTTGTGATTGTGAGAAAAAGAGCGATAAATTTGAATTTGAGAGGTTGAGAGCTTCAAAATGAGTACCCACAAGCCTATGTTCCTTTAAATTTGAAATGTCGGGTTTAAAGGCGCATAGGGGTCCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGGCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTCAGACAAGTGCTAATTTGGAGTTGAGCTTCAAATTGAGTATAACCATCACCTACTTTTAGCATTTTCGAAAATTGGGACCCCCTTTGCRCCTTTAAATGTTTTCCAACTTAAAGAAAAACAGTCATGTTTATACTCATTTTAAAGCTCGAAACGCGCCAAATGCAAAATTGTCAAAGTTTTTTAGCTTGAACGAAAATTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGATACCATGGTCCCTGTGAACACACCAAACATCAAACCTGACTTTTCCAAAAATAAAAATTCTTTTAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>300 220 200 110 103 67</canonical_bands>
                <polymorphic_bands>367 220 200 110 103</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTAAGTTGTGAAGATGTTGTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTGATGTTTGGTGTGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>896</pcr_amplicon_size>
		<canonical_amplicon>AAGTAAGTTGTGAAGATGTTGTGATTGTGAGAAAAAGAGCGATAAATTTGAATTTGAGAGGTTGAGAGCTTCAAAATGAGTACCCACAAGCCTATGTTCCTTTAAATTTGAAATGTCGGGTTTAAAGGCGCATAGGGGTCCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGGCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTCAGACAAGTGCTAATTTGGAGTTGAGCTTCAAATTGAGTATAACCATCACCTACTTTTAGCATTTTCGAAAATTGGGACCCCCTTTGCGCCTTTAAATGTTTTCCAACTTAAAGAAAAACAGTCATGTTTATACTCATTTTAAAGCTCGAAACGCGCCAAATGCAAAATTGTCAAAGTTTTTTAGCTTGAACGAAAATTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGATACCATGGTCCCTGTGAACACACCAAACATCAAA</canonical_amplicon>
		<polymorphic_amplicon>AAGTAAGTTGTGAAGATGTTGTGATTGTGAGAAAAAGAGCGATAAATTTGAATTTGAGAGGTTGAGAGCTTCAAAATGAGTACCCACAAGCCTATGTTCCTTTAAATTTGAAATGTCGGGTTTAAAGGCGCATAGGGGTCCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGGCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTCAGACAAGTGCTAATTTGGAGTTGAGCTTCAAATTGAGTATAACCATCACCTACTTTTAGCATTTTCGAAAATTGGGACCCCCTTTGCRCCTTTAAATGTTTTCCAACTTAAAGAAAAACAGTCATGTTTATACTCATTTTAAAGCTCGAAACGCGCCAAATGCAAAATTGTCAAAGTTTTTTAGCTTGAACGAAAATTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGATACCATGGTCCCTGTGAACACACCAAACATCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38129</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>163129</contig_pos>
        <strand></strand>
        <context>cttaaagaaa[A/C]acagtcatgt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAAATTGGGACCCCCTTTGCGCCTTTAAATGTTTTCCAACTTAAAGAAA</left_flank>
        <right_flank>ACAGTCATGTTTATACTCATTTTAAAGCTCGAAACGCGCCAAATGCAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAATATTTTTTTAGCTTTTCGCAAGTTGCGAATTTGTTCAAGTAAGTTGTGAAGATGTTGTGATTGTGAGAAAAAGAGCGATAAATTTGAATTTGAGAGGTTGAGAGCTTCAAAATGAGTACCCACAAGCCTATGTTCCTTTAAATTTGAAATGTCGGGTTTAAAGGCGCATAGGGGTCCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGGCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTCAGACAAGTGCTAATTTGGAGTTGAGCTTCAAATTGAGTATAACCATCACCTACTTTTAGCATTTTCGAAAATTGGGACCCCCTTTGCGCCTTTAAATGTTTTCCAACTTAAAGAAAAACAGTCATGTTTATACTCATTTTAAAGCTCGAAACGCGCCAAATGCAAAATTGTCAAAGTTTTTTAGCTTGAACGAAAATTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGATACCATGGTCCCTGTGAACACACCAAACATCAAACCTGACTTTTCCAAAAATAAAAATTCTTTTAAAAAAATAAAATTTCCGTTTTCCAGGTTCCCA</canonical>
            <polymorphic>AACAATATTTTTTTAGCTTTTCGCAAGTTGCGAATTTGTTCAAGTAAGTTGTGAAGATGTTGTGATTGTGAGAAAAAGAGCGATAAATTTGAATTTGAGAGGTTGAGAGCTTCAAAATGAGTACCCACAAGCCTATGTTCCTTTAAATTTGAAATGTCGGGTTTAAAGGCGCATAGGGGTCCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGGCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTCAGACAAGTGCTAATTTGGAGTTGAGCTTCAAATTGAGTATAACCATCACCTACTTTTAGCATTTTCGAAAATTGGGACCCCCTTTGCGCCTTTAAATGTTTTCCAACTTAAAGAAAMACAGTCATGTTTATACTCATTTTAAAGCTCGAAACGCGCCAAATGCAAAATTGTCAAAGTTTTTTAGCTTGAACGAAAATTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGATACCATGGTCCCTGTGAACACACCAAACATCAAACCTGACTTTTCCAAAAATAAAAATTCTTTTAAAAAAATAAAATTTCCGTTTTCCAGGTTCCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTAAGTTGTGAAGATGTTGTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTGATGTTTGGTGTGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>896</pcr_amplicon_size>
		<canonical_amplicon>AAGTAAGTTGTGAAGATGTTGTGATTGTGAGAAAAAGAGCGATAAATTTGAATTTGAGAGGTTGAGAGCTTCAAAATGAGTACCCACAAGCCTATGTTCCTTTAAATTTGAAATGTCGGGTTTAAAGGCGCATAGGGGTCCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGGCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTCAGACAAGTGCTAATTTGGAGTTGAGCTTCAAATTGAGTATAACCATCACCTACTTTTAGCATTTTCGAAAATTGGGACCCCCTTTGCGCCTTTAAATGTTTTCCAACTTAAAGAAAAACAGTCATGTTTATACTCATTTTAAAGCTCGAAACGCGCCAAATGCAAAATTGTCAAAGTTTTTTAGCTTGAACGAAAATTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGATACCATGGTCCCTGTGAACACACCAAACATCAAA</canonical_amplicon>
		<polymorphic_amplicon>AAGTAAGTTGTGAAGATGTTGTGATTGTGAGAAAAAGAGCGATAAATTTGAATTTGAGAGGTTGAGAGCTTCAAAATGAGTACCCACAAGCCTATGTTCCTTTAAATTTGAAATGTCGGGTTTAAAGGCGCATAGGGGTCCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGGCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTCAGACAAGTGCTAATTTGGAGTTGAGCTTCAAATTGAGTATAACCATCACCTACTTTTAGCATTTTCGAAAATTGGGACCCCCTTTGCGCCTTTAAATGTTTTCCAACTTAAAGAAAMACAGTCATGTTTATACTCATTTTAAAGCTCGAAACGCGCCAAATGCAAAATTGTCAAAGTTTTTTAGCTTGAACGAAAATTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGATACCATGGTCCCTGTGAACACACCAAACATCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38130</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>163160</contig_pos>
        <strand></strand>
        <context>tttaaagctc[G/A]aaacgcgcca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTTTTCCAACTTAAAGAAAAACAGTCATGTTTATACTCATTTTAAAGCTC</left_flank>
        <right_flank>AAACGCGCCAAATGCAAAATTGTCAAAGTTTTTTAGCTTGAACGAAAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTTGTTCAAGTAAGTTGTGAAGATGTTGTGATTGTGAGAAAAAGAGCGATAAATTTGAATTTGAGAGGTTGAGAGCTTCAAAATGAGTACCCACAAGCCTATGTTCCTTTAAATTTGAAATGTCGGGTTTAAAGGCGCATAGGGGTCCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGGCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTCAGACAAGTGCTAATTTGGAGTTGAGCTTCAAATTGAGTATAACCATCACCTACTTTTAGCATTTTCGAAAATTGGGACCCCCTTTGCGCCTTTAAATGTTTTCCAACTTAAAGAAAAACAGTCATGTTTATACTCATTTTAAAGCTCGAAACGCGCCAAATGCAAAATTGTCAAAGTTTTTTAGCTTGAACGAAAATTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGATACCATGGTCCCTGTGAACACACCAAACATCAAACCTGACTTTTCCAAAAATAAAAATTCTTTTAAAAAAATAAAATTTCCGTTTTCCAGGTTCCCATATTCCGAAAAAGTAGCGCTTACGCTCTGAT</canonical>
            <polymorphic>GAATTTGTTCAAGTAAGTTGTGAAGATGTTGTGATTGTGAGAAAAAGAGCGATAAATTTGAATTTGAGAGGTTGAGAGCTTCAAAATGAGTACCCACAAGCCTATGTTCCTTTAAATTTGAAATGTCGGGTTTAAAGGCGCATAGGGGTCCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGGCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTCAGACAAGTGCTAATTTGGAGTTGAGCTTCAAATTGAGTATAACCATCACCTACTTTTAGCATTTTCGAAAATTGGGACCCCCTTTGCGCCTTTAAATGTTTTCCAACTTAAAGAAAAACAGTCATGTTTATACTCATTTTAAAGCTCRAAACGCGCCAAATGCAAAATTGTCAAAGTTTTTTAGCTTGAACGAAAATTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGATACCATGGTCCCTGTGAACACACCAAACATCAAACCTGACTTTTCCAAAAATAAAAATTCTTTTAAAAAAATAAAATTTCCGTTTTCCAGGTTCCCATATTCCGAAAAAGTAGCGCTTACGCTCTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>335 247 130 124 83 81</canonical_bands>
                <polymorphic_bands>335 328 130 124 83</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTAAGTTGTGAAGATGTTGTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTGATGTTTGGTGTGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>896</pcr_amplicon_size>
		<canonical_amplicon>AAGTAAGTTGTGAAGATGTTGTGATTGTGAGAAAAAGAGCGATAAATTTGAATTTGAGAGGTTGAGAGCTTCAAAATGAGTACCCACAAGCCTATGTTCCTTTAAATTTGAAATGTCGGGTTTAAAGGCGCATAGGGGTCCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGGCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTCAGACAAGTGCTAATTTGGAGTTGAGCTTCAAATTGAGTATAACCATCACCTACTTTTAGCATTTTCGAAAATTGGGACCCCCTTTGCGCCTTTAAATGTTTTCCAACTTAAAGAAAAACAGTCATGTTTATACTCATTTTAAAGCTCGAAACGCGCCAAATGCAAAATTGTCAAAGTTTTTTAGCTTGAACGAAAATTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGATACCATGGTCCCTGTGAACACACCAAACATCAAA</canonical_amplicon>
		<polymorphic_amplicon>AAGTAAGTTGTGAAGATGTTGTGATTGTGAGAAAAAGAGCGATAAATTTGAATTTGAGAGGTTGAGAGCTTCAAAATGAGTACCCACAAGCCTATGTTCCTTTAAATTTGAAATGTCGGGTTTAAAGGCGCATAGGGGTCCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGGCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTCAGACAAGTGCTAATTTGGAGTTGAGCTTCAAATTGAGTATAACCATCACCTACTTTTAGCATTTTCGAAAATTGGGACCCCCTTTGCGCCTTTAAATGTTTTCCAACTTAAAGAAAAACAGTCATGTTTATACTCATTTTAAAGCTCRAAACGCGCCAAATGCAAAATTGTCAAAGTTTTTTAGCTTGAACGAAAATTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGATACCATGGTCCCTGTGAACACACCAAACATCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38131</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>163174</contig_pos>
        <strand></strand>
        <context>cgcgccaaat[G/T]caaaattgtc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGAAAAACAGTCATGTTTATACTCATTTTAAAGCTCGAAACGCGCCAAAT</left_flank>
        <right_flank>CAAAATTGTCAAAGTTTTTTAGCTTGAACGAAAATTGACAGAGTTACGGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTTGTGAAGATGTTGTGATTGTGAGAAAAAGAGCGATAAATTTGAATTTGAGAGGTTGAGAGCTTCAAAATGAGTACCCACAAGCCTATGTTCCTTTAAATTTGAAATGTCGGGTTTAAAGGCGCATAGGGGTCCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGGCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTCAGACAAGTGCTAATTTGGAGTTGAGCTTCAAATTGAGTATAACCATCACCTACTTTTAGCATTTTCGAAAATTGGGACCCCCTTTGCGCCTTTAAATGTTTTCCAACTTAAAGAAAAACAGTCATGTTTATACTCATTTTAAAGCTCGAAACGCGCCAAATGCAAAATTGTCAAAGTTTTTTAGCTTGAACGAAAATTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGATACCATGGTCCCTGTGAACACACCAAACATCAAACCTGACTTTTCCAAAAATAAAAATTCTTTTAAAAAAATAAAATTTCCGTTTTCCAGGTTCCCATATTCCGAAAAAGTAGCGCTTACGCTCTGATGGGTGCCATGTTCA</canonical>
            <polymorphic>AAGTTGTGAAGATGTTGTGATTGTGAGAAAAAGAGCGATAAATTTGAATTTGAGAGGTTGAGAGCTTCAAAATGAGTACCCACAAGCCTATGTTCCTTTAAATTTGAAATGTCGGGTTTAAAGGCGCATAGGGGTCCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGGCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTCAGACAAGTGCTAATTTGGAGTTGAGCTTCAAATTGAGTATAACCATCACCTACTTTTAGCATTTTCGAAAATTGGGACCCCCTTTGCGCCTTTAAATGTTTTCCAACTTAAAGAAAAACAGTCATGTTTATACTCATTTTAAAGCTCGAAACGCGCCAAATKCAAAATTGTCAAAGTTTTTTAGCTTGAACGAAAATTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGATACCATGGTCCCTGTGAACACACCAAACATCAAACCTGACTTTTCCAAAAATAAAAATTCTTTTAAAAAAATAAAATTTCCGTTTTCCAGGTTCCCATATTCCGAAAAAGTAGCGCTTACGCTCTGATGGGTGCCATGTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>330 292 196 173 9</canonical_bands>
                <polymorphic_bands>339 292 196 173</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 326 169 5</canonical_bands>
                <polymorphic_bands>669 326 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTAAGTTGTGAAGATGTTGTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTGATGTTTGGTGTGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>896</pcr_amplicon_size>
		<canonical_amplicon>TGCAAAATTGTCAAAGTTTTTTAGCTTGAACGAAAATTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGATACCATGGTCCCTGTGAACACACCAAACATCAAA</canonical_amplicon>
		<polymorphic_amplicon>TKCAAAATTGTCAAAGTTTTTTAGCTTGAACGAAAATTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGATACCATGGTCCCTGTGAACACACCAAACATCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38132</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>163200</contig_pos>
        <strand></strand>
        <context>tttttagctt[G/T]aacgaaaatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTAAAGCTCGAAACGCGCCAAATGCAAAATTGTCAAAGTTTTTTAGCTT</left_flank>
        <right_flank>AACGAAAATTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAAGAGCGATAAATTTGAATTTGAGAGGTTGAGAGCTTCAAAATGAGTACCCACAAGCCTATGTTCCTTTAAATTTGAAATGTCGGGTTTAAAGGCGCATAGGGGTCCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGGCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTCAGACAAGTGCTAATTTGGAGTTGAGCTTCAAATTGAGTATAACCATCACCTACTTTTAGCATTTTCGAAAATTGGGACCCCCTTTGCGCCTTTAAATGTTTTCCAACTTAAAGAAAAACAGTCATGTTTATACTCATTTTAAAGCTCGAAACGCGCCAAATGCAAAATTGTCAAAGTTTTTTAGCTTGAACGAAAATTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGATACCATGGTCCCTGTGAACACACCAAACATCAAACCTGACTTTTCCAAAAATAAAAATTCTTTTAAAAAAATAAAATTTCCGTTTTCCAGGTTCCCATATTCCGAAAAAGTAGCGCTTACGCTCTGATGGGTGCCATGTTCACCACTTCCGGCAGTGAAAAGAAGCAG</canonical>
            <polymorphic>GAAAAAGAGCGATAAATTTGAATTTGAGAGGTTGAGAGCTTCAAAATGAGTACCCACAAGCCTATGTTCCTTTAAATTTGAAATGTCGGGTTTAAAGGCGCATAGGGGTCCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGGCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTCAGACAAGTGCTAATTTGGAGTTGAGCTTCAAATTGAGTATAACCATCACCTACTTTTAGCATTTTCGAAAATTGGGACCCCCTTTGCGCCTTTAAATGTTTTCCAACTTAAAGAAAAACAGTCATGTTTATACTCATTTTAAAGCTCGAAACGCGCCAAATGCAAAATTGTCAAAGTTTTTTAGCTTKAACGAAAATTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGATACCATGGTCCCTGTGAACACACCAAACATCAAACCTGACTTTTCCAAAAATAAAAATTCTTTTAAAAAAATAAAATTTCCGTTTTCCAGGTTCCCATATTCCGAAAAAGTAGCGCTTACGCTCTGATGGGTGCCATGTTCACCACTTCCGGCAGTGAAAAGAAGCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTAAGTTGTGAAGATGTTGTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTGATGTTTGGTGTGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>896</pcr_amplicon_size>
		<canonical_amplicon>TGAACGAAAATTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGATACCATGGTCCCTGTGAACACACCAAACATCAAA</canonical_amplicon>
		<polymorphic_amplicon>TKAACGAAAATTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGATACCATGGTCCCTGTGAACACACCAAACATCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38133</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>163222</contig_pos>
        <strand></strand>
        <context>acagagttac[G/A]gtagtttgaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATGCAAAATTGTCAAAGTTTTTTAGCTTGAACGAAAATTGACAGAGTTAC</left_flank>
        <right_flank>GTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAGAGGTTGAGAGCTTCAAAATGAGTACCCACAAGCCTATGTTCCTTTAAATTTGAAATGTCGGGTTTAAAGGCGCATAGGGGTCCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGGCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTCAGACAAGTGCTAATTTGGAGTTGAGCTTCAAATTGAGTATAACCATCACCTACTTTTAGCATTTTCGAAAATTGGGACCCCCTTTGCGCCTTTAAATGTTTTCCAACTTAAAGAAAAACAGTCATGTTTATACTCATTTTAAAGCTCGAAACGCGCCAAATGCAAAATTGTCAAAGTTTTTTAGCTTGAACGAAAATTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGATACCATGGTCCCTGTGAACACACCAAACATCAAACCTGACTTTTCCAAAAATAAAAATTCTTTTAAAAAAATAAAATTTCCGTTTTCCAGGTTCCCATATTCCGAAAAAGTAGCGCTTACGCTCTGATGGGTGCCATGTTCACCACTTCCGGCAGTGAAAAGAAGCAGTCTCAAATTCTAACGGAAGTCA</canonical>
            <polymorphic>TTTGAGAGGTTGAGAGCTTCAAAATGAGTACCCACAAGCCTATGTTCCTTTAAATTTGAAATGTCGGGTTTAAAGGCGCATAGGGGTCCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGGCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTCAGACAAGTGCTAATTTGGAGTTGAGCTTCAAATTGAGTATAACCATCACCTACTTTTAGCATTTTCGAAAATTGGGACCCCCTTTGCGCCTTTAAATGTTTTCCAACTTAAAGAAAAACAGTCATGTTTATACTCATTTTAAAGCTCGAAACGCGCCAAATGCAAAATTGTCAAAGTTTTTTAGCTTGAACGAAAATTGACAGAGTTACRGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGATACCATGGTCCCTGTGAACACACCAAACATCAAACCTGACTTTTCCAAAAATAAAAATTCTTTTAAAAAAATAAAATTTCCGTTTTCCAGGTTCCCATATTCCGAAAAAGTAGCGCTTACGCTCTGATGGGTGCCATGTTCACCACTTCCGGCAGTGAAAAGAAGCAGTCTCAAATTCTAACGGAAGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTAAGTTGTGAAGATGTTGTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTGATGTTTGGTGTGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>896</pcr_amplicon_size>
		<canonical_amplicon>CGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGATACCATGGTCCCTGTGAACACACCAAACATCAAA</canonical_amplicon>
		<polymorphic_amplicon>CRGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGATACCATGGTCCCTGTGAACACACCAAACATCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38134</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>163259</contig_pos>
        <strand></strand>
        <context>agcgatatga[C/T]gcaaaagcgt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGA</left_flank>
        <right_flank>GCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCTATGTTCCTTTAAATTTGAAATGTCGGGTTTAAAGGCGCATAGGGGTCCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGGCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTCAGACAAGTGCTAATTTGGAGTTGAGCTTCAAATTGAGTATAACCATCACCTACTTTTAGCATTTTCGAAAATTGGGACCCCCTTTGCGCCTTTAAATGTTTTCCAACTTAAAGAAAAACAGTCATGTTTATACTCATTTTAAAGCTCGAAACGCGCCAAATGCAAAATTGTCAAAGTTTTTTAGCTTGAACGAAAATTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGATACCATGGTCCCTGTGAACACACCAAACATCAAACCTGACTTTTCCAAAAATAAAAATTCTTTTAAAAAAATAAAATTTCCGTTTTCCAGGTTCCCATATTCCGAAAAAGTAGCGCTTACGCTCTGATGGGTGCCATGTTCACCACTTCCGGCAGTGAAAAGAAGCAGTCTCAAATTCTAACGGAAGTCAATTCACGTCTGCAGGCCGTTCTAGAAGACGTCATACA</canonical>
            <polymorphic>GCCTATGTTCCTTTAAATTTGAAATGTCGGGTTTAAAGGCGCATAGGGGTCCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGGCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTCAGACAAGTGCTAATTTGGAGTTGAGCTTCAAATTGAGTATAACCATCACCTACTTTTAGCATTTTCGAAAATTGGGACCCCCTTTGCGCCTTTAAATGTTTTCCAACTTAAAGAAAAACAGTCATGTTTATACTCATTTTAAAGCTCGAAACGCGCCAAATGCAAAATTGTCAAAGTTTTTTAGCTTGAACGAAAATTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGAYGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGATACCATGGTCCCTGTGAACACACCAAACATCAAACCTGACTTTTCCAAAAATAAAAATTCTTTTAAAAAAATAAAATTTCCGTTTTCCAGGTTCCCATATTCCGAAAAAGTAGCGCTTACGCTCTGATGGGTGCCATGTTCACCACTTCCGGCAGTGAAAAGAAGCAGTCTCAAATTCTAACGGAAGTCAATTCACGTCTGCAGGCCGTTCTAGAAGACGTCATACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTAAGTTGTGAAGATGTTGTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTGATGTTTGGTGTGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>896</pcr_amplicon_size>
		<canonical_amplicon>ACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGATACCATGGTCCCTGTGAACACACCAAACATCAAA</canonical_amplicon>
		<polymorphic_amplicon>AYGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGATACCATGGTCCCTGTGAACACACCAAACATCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38135</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>163309</contig_pos>
        <strand></strand>
        <context>gacaaaatgt[C/G]tacaaatcaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGT</left_flank>
        <right_flank>TACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGGCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTCAGACAAGTGCTAATTTGGAGTTGAGCTTCAAATTGAGTATAACCATCACCTACTTTTAGCATTTTCGAAAATTGGGACCCCCTTTGCGCCTTTAAATGTTTTCCAACTTAAAGAAAAACAGTCATGTTTATACTCATTTTAAAGCTCGAAACGCGCCAAATGCAAAATTGTCAAAGTTTTTTAGCTTGAACGAAAATTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGATACCATGGTCCCTGTGAACACACCAAACATCAAACCTGACTTTTCCAAAAATAAAAATTCTTTTAAAAAAATAAAATTTCCGTTTTCCAGGTTCCCATATTCCGAAAAAGTAGCGCTTACGCTCTGATGGGTGCCATGTTCACCACTTCCGGCAGTGAAAAGAAGCAGTCTCAAATTCTAACGGAAGTCAATTCACGTCTGCAGGCCGTTCTAGAAGACGTCATACAACGCAATATTTGTATGAGGGTAAGAAATTTGAAAGTGAGAGAGCTTCAAA</canonical>
            <polymorphic>CCGAAATTTTGAAATTCTAAAAAGTGAGTAGTCCGTGATTATATTCATTTTGAAGCTCAAAACGCGTAAAACTCAAATCTTTTTAGTTTTTCTGATTTGGAGCAGAATGAGTCAAGATACGGTAGTTTTAAGTTTCTAAGCTAGCTATATGGACTAAAAACGGCATAACTTCCTTCATTTTTGCTCGAATGCAATGCATTTTCAGACAAGTGCTAATTTGGAGTTGAGCTTCAAATTGAGTATAACCATCACCTACTTTTAGCATTTTCGAAAATTGGGACCCCCTTTGCGCCTTTAAATGTTTTCCAACTTAAAGAAAAACAGTCATGTTTATACTCATTTTAAAGCTCGAAACGCGCCAAATGCAAAATTGTCAAAGTTTTTTAGCTTGAACGAAAATTGACAGAGTTACGGTAGTTTGAATATTGTTCAAAAATTTAGCGATATGACGCAAAAGCGTAGTAACTCTTCAAGTTTTGCTTCAAATTTGACAAAATGTSTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGATACCATGGTCCCTGTGAACACACCAAACATCAAACCTGACTTTTCCAAAAATAAAAATTCTTTTAAAAAAATAAAATTTCCGTTTTCCAGGTTCCCATATTCCGAAAAAGTAGCGCTTACGCTCTGATGGGTGCCATGTTCACCACTTCCGGCAGTGAAAAGAAGCAGTCTCAAATTCTAACGGAAGTCAATTCACGTCTGCAGGCCGTTCTAGAAGACGTCATACAACGCAATATTTGTATGAGGGTAAGAAATTTGAAAGTGAGAGAGCTTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GACNNNNNGTC</site>
                <isoschizomers>
                    <enzyme>AhdI</enzyme>
                    <enzyme>AspEI</enzyme>
                    <enzyme>Eam1105I</enzyme>
                    <enzyme>EclHKI</enzyme>
                    <enzyme>NruGI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTAAGTTGTGAAGATGTTGTGA</pcr_primer_p1>
		<pcr_primer_p2>TTTGATGTTTGGTGTGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>896</pcr_amplicon_size>
		<canonical_amplicon>TCTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGATACCATGGTCCCTGTGAACACACCAAACATCAAA</canonical_amplicon>
		<polymorphic_amplicon>TSTACAAATCAATTTGTCTTCTTAATAGCTTCAAAATAAGTACCCACAAGCCTATGCTCCTTCAAGTTTGAACCTATGCGCCTTTAAATGTCAATTTTCGAATTTAAAGGAACATAGGCGTGTGGGTACTCATTTTGAAGCTCTCAGCAAGACAAGTTTAAATTTTGTAATATTGTTCTCTGTAAACGCGCCGAAGGCACGACAGACTTGTTTTTCTTTTTTCGATACCATGGTCCCTGTGAACACACCAAACATCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38136</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>182462</contig_pos>
        <strand></strand>
        <context>gaattctcaa[G/A]ttctagagat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCATTTGAAAGCTCTTGACAAGCCGAATTTAAAATTTTTGGAATTCTCAA</left_flank>
        <right_flank>TTCTAGAGATTGAGAGCTTCAAAATGAGACCAAACACGACTAGTTTCCCT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATAGAAAAGTAGGTCATGATTATACTCATTTTGAAGCTCTGGAAGCGTTGAATTTGAATATGAAGATTTTGAAACGAAAAATAATACAGAATAGAGCGTTTTAGAAGACGTCAGAAATCGAGTTTTCTGAAAATTGCCTGTAACTTGACTCCCCCTAGACCAAATTTTTTGAAAATTGCACTATTCGACAGGAAATGGTGAGAGCTTCAAAATGAGTATAATCATGATCTACTTTTTTTTTTCAAATTTCGAAATCTGGACCTCTATGCGCCTTTAAAGTCGAAAAACCAAAGCGGGCGGAGTCTGGTCGTGTTTGAGCTCATCTTAAAGCGCAAAAAACGACAAATTCAGATGTTTTGGAATTTTTGAATTTGAAAAATGATTGGCCGAGTCACGGTAGTCGCGTCTTTTGAAGTCAAAAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTGAAAGCTCTTGACAAGCCGAATTTAAAATTTTTGGAATTCTCAAGTTCTAGAGATTGAGAGCTTCAAAATGAGACCAAACACGACTAGTTTCCCTCAATTTTGAGTTTTTGACCTAAGCGTTGCGGTCGCGTCGCGGTTCGGTAGGTCAAAATTCAAAGTTGAGCTAAACTAGTCGTGATTAGGCTGATTTTTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTTTGTACAACAACCTAATCCCGATTTCCCTCCAAGTCACCCTGGAAATCGTGCGTTTCTTCCAAGCGATCTATATCAATAATGATATTGAAATGTACGATGTGAACAGTGATTCGTGTGCCATCGCGCGCACTTCCAATTTGAACGAGGAGCTTGGGCAGGTGAAGTACATCATG</canonical>
            <polymorphic>TATAGAAAAGTAGGTCATGATTATACTCATTTTGAAGCTCTGGAAGCGTTGAATTTGAATATGAAGATTTTGAAACGAAAAATAATACAGAATAGAGCGTTTTAGAAGACGTCAGAAATCGAGTTTTCTGAAAATTGCCTGTAACTTGACTCCCCCTAGACCAAATTTTTTGAAAATTGCACTATTCGACAGGAAATGGTGAGAGCTTCAAAATGAGTATAATCATGATCTACTTTTTTTTTTCAAATTTCGAAATCTGGACCTCTATGCGCCTTTAAAGTCGAAAAACCAAAGCGGGCGGAGTCTGGTCGTGTTTGAGCTCATCTTAAAGCGCAAAAAACGACAAATTCAGATGTTTTGGAATTTTTGAATTTGAAAAATGATTGGCCGAGTCACGGTAGTCGCGTCTTTTGAAGTCAAAAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTGAAAGCTCTTGACAAGCCGAATTTAAAATTTTTGGAATTCTCAARTTCTAGAGATTGAGAGCTTCAAAATGAGACCAAACACGACTAGTTTCCCTCAATTTTGAGTTTTTGACCTAAGCGTTGCGGTCGCGTCGCGGTTCGGTAGGTCAAAATTCAAAGTTGAGCTAAACTAGTCGTGATTAGGCTGATTTTTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTTTGTACAACAACCTAATCCCGATTTCCCTCCAAGTCACCCTGGAAATCGTGCGTTTCTTCCAAGCGATCTATATCAATAATGATATTGAAATGTACGATGTGAACAGTGATTCGTGTGCCATCGCGCGCACTTCCAATTTGAACGAGGAGCTTGGGCAGGTGAAGTACATCATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGATCTTAAGCCTATTTACTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATGAAGAATGTCAGCACAC</pcr_primer_p2>
		<pcr_amplicon_size>981</pcr_amplicon_size>
		<canonical_amplicon>AGTTCTAGAGATTGAGAGCTTCAAAATGAGACCAAACACGACTAGTTTCCCTCAATTTTGAGTTTTTGACCTAAGCGTTGCGGTCGCGTCGCGGTTCGGTAGGTCAAAATTCAAAGTTGAGCTAAACTAGTCGTGATTAGGCTGATTTTTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTT</canonical_amplicon>
		<polymorphic_amplicon>ARTTCTAGAGATTGAGAGCTTCAAAATGAGACCAAACACGACTAGTTTCCCTCAATTTTGAGTTTTTGACCTAAGCGTTGCGGTCGCGTCGCGGTTCGGTAGGTCAAAATTCAAAGTTGAGCTAAACTAGTCGTGATTAGGCTGATTTTTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38137</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>182488</contig_pos>
        <strand></strand>
        <context>gcttcaaaat[G/A]agaccaaaca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTTAAAATTTTTGGAATTCTCAAGTTCTAGAGATTGAGAGCTTCAAAAT</left_flank>
        <right_flank>AGACCAAACACGACTAGTTTCCCTCAATTTTGAGTTTTTGACCTAAGCGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATTTTGAAGCTCTGGAAGCGTTGAATTTGAATATGAAGATTTTGAAACGAAAAATAATACAGAATAGAGCGTTTTAGAAGACGTCAGAAATCGAGTTTTCTGAAAATTGCCTGTAACTTGACTCCCCCTAGACCAAATTTTTTGAAAATTGCACTATTCGACAGGAAATGGTGAGAGCTTCAAAATGAGTATAATCATGATCTACTTTTTTTTTTCAAATTTCGAAATCTGGACCTCTATGCGCCTTTAAAGTCGAAAAACCAAAGCGGGCGGAGTCTGGTCGTGTTTGAGCTCATCTTAAAGCGCAAAAAACGACAAATTCAGATGTTTTGGAATTTTTGAATTTGAAAAATGATTGGCCGAGTCACGGTAGTCGCGTCTTTTGAAGTCAAAAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTGAAAGCTCTTGACAAGCCGAATTTAAAATTTTTGGAATTCTCAAGTTCTAGAGATTGAGAGCTTCAAAATGAGACCAAACACGACTAGTTTCCCTCAATTTTGAGTTTTTGACCTAAGCGTTGCGGTCGCGTCGCGGTTCGGTAGGTCAAAATTCAAAGTTGAGCTAAACTAGTCGTGATTAGGCTGATTTTTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTTTGTACAACAACCTAATCCCGATTTCCCTCCAAGTCACCCTGGAAATCGTGCGTTTCTTCCAAGCGATCTATATCAATAATGATATTGAAATGTACGATGTGAACAGTGATTCGTGTGCCATCGCGCGCACTTCCAATTTGAACGAGGAGCTTGGGCAGGTGAAGTACATCATGTCTGATAAGACTGGCACACTGACAAG</canonical>
            <polymorphic>TCATTTTGAAGCTCTGGAAGCGTTGAATTTGAATATGAAGATTTTGAAACGAAAAATAATACAGAATAGAGCGTTTTAGAAGACGTCAGAAATCGAGTTTTCTGAAAATTGCCTGTAACTTGACTCCCCCTAGACCAAATTTTTTGAAAATTGCACTATTCGACAGGAAATGGTGAGAGCTTCAAAATGAGTATAATCATGATCTACTTTTTTTTTTCAAATTTCGAAATCTGGACCTCTATGCGCCTTTAAAGTCGAAAAACCAAAGCGGGCGGAGTCTGGTCGTGTTTGAGCTCATCTTAAAGCGCAAAAAACGACAAATTCAGATGTTTTGGAATTTTTGAATTTGAAAAATGATTGGCCGAGTCACGGTAGTCGCGTCTTTTGAAGTCAAAAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTGAAAGCTCTTGACAAGCCGAATTTAAAATTTTTGGAATTCTCAAGTTCTAGAGATTGAGAGCTTCAAAATRAGACCAAACACGACTAGTTTCCCTCAATTTTGAGTTTTTGACCTAAGCGTTGCGGTCGCGTCGCGGTTCGGTAGGTCAAAATTCAAAGTTGAGCTAAACTAGTCGTGATTAGGCTGATTTTTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTTTGTACAACAACCTAATCCCGATTTCCCTCCAAGTCACCCTGGAAATCGTGCGTTTCTTCCAAGCGATCTATATCAATAATGATATTGAAATGTACGATGTGAACAGTGATTCGTGTGCCATCGCGCGCACTTCCAATTTGAACGAGGAGCTTGGGCAGGTGAAGTACATCATGTCTGATAAGACTGGCACACTGACAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGATCTTAAGCCTATTTACTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATGAAGAATGTCAGCACAC</pcr_primer_p2>
		<pcr_amplicon_size>981</pcr_amplicon_size>
		<canonical_amplicon>TGAGACCAAACACGACTAGTTTCCCTCAATTTTGAGTTTTTGACCTAAGCGTTGCGGTCGCGTCGCGGTTCGGTAGGTCAAAATTCAAAGTTGAGCTAAACTAGTCGTGATTAGGCTGATTTTTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTT</canonical_amplicon>
		<polymorphic_amplicon>TRAGACCAAACACGACTAGTTTCCCTCAATTTTGAGTTTTTGACCTAAGCGTTGCGGTCGCGTCGCGGTTCGGTAGGTCAAAATTCAAAGTTGAGCTAAACTAGTCGTGATTAGGCTGATTTTTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38138</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>182514</contig_pos>
        <strand></strand>
        <context>agtttccctc[A/G]attttgagtt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTAGAGATTGAGAGCTTCAAAATGAGACCAAACACGACTAGTTTCCCTC</left_flank>
        <right_flank>ATTTTGAGTTTTTGACCTAAGCGTTGCGGTCGCGTCGCGGTTCGGTAGGT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTGAATATGAAGATTTTGAAACGAAAAATAATACAGAATAGAGCGTTTTAGAAGACGTCAGAAATCGAGTTTTCTGAAAATTGCCTGTAACTTGACTCCCCCTAGACCAAATTTTTTGAAAATTGCACTATTCGACAGGAAATGGTGAGAGCTTCAAAATGAGTATAATCATGATCTACTTTTTTTTTTCAAATTTCGAAATCTGGACCTCTATGCGCCTTTAAAGTCGAAAAACCAAAGCGGGCGGAGTCTGGTCGTGTTTGAGCTCATCTTAAAGCGCAAAAAACGACAAATTCAGATGTTTTGGAATTTTTGAATTTGAAAAATGATTGGCCGAGTCACGGTAGTCGCGTCTTTTGAAGTCAAAAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTGAAAGCTCTTGACAAGCCGAATTTAAAATTTTTGGAATTCTCAAGTTCTAGAGATTGAGAGCTTCAAAATGAGACCAAACACGACTAGTTTCCCTCAATTTTGAGTTTTTGACCTAAGCGTTGCGGTCGCGTCGCGGTTCGGTAGGTCAAAATTCAAAGTTGAGCTAAACTAGTCGTGATTAGGCTGATTTTTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTTTGTACAACAACCTAATCCCGATTTCCCTCCAAGTCACCCTGGAAATCGTGCGTTTCTTCCAAGCGATCTATATCAATAATGATATTGAAATGTACGATGTGAACAGTGATTCGTGTGCCATCGCGCGCACTTCCAATTTGAACGAGGAGCTTGGGCAGGTGAAGTACATCATGTCTGATAAGACTGGCACACTGACAAGAAATGTGATGAAGTTCAAACGGGTTT</canonical>
            <polymorphic>ATTTGAATATGAAGATTTTGAAACGAAAAATAATACAGAATAGAGCGTTTTAGAAGACGTCAGAAATCGAGTTTTCTGAAAATTGCCTGTAACTTGACTCCCCCTAGACCAAATTTTTTGAAAATTGCACTATTCGACAGGAAATGGTGAGAGCTTCAAAATGAGTATAATCATGATCTACTTTTTTTTTTCAAATTTCGAAATCTGGACCTCTATGCGCCTTTAAAGTCGAAAAACCAAAGCGGGCGGAGTCTGGTCGTGTTTGAGCTCATCTTAAAGCGCAAAAAACGACAAATTCAGATGTTTTGGAATTTTTGAATTTGAAAAATGATTGGCCGAGTCACGGTAGTCGCGTCTTTTGAAGTCAAAAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTGAAAGCTCTTGACAAGCCGAATTTAAAATTTTTGGAATTCTCAAGTTCTAGAGATTGAGAGCTTCAAAATGAGACCAAACACGACTAGTTTCCCTCRATTTTGAGTTTTTGACCTAAGCGTTGCGGTCGCGTCGCGGTTCGGTAGGTCAAAATTCAAAGTTGAGCTAAACTAGTCGTGATTAGGCTGATTTTTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTTTGTACAACAACCTAATCCCGATTTCCCTCCAAGTCACCCTGGAAATCGTGCGTTTCTTCCAAGCGATCTATATCAATAATGATATTGAAATGTACGATGTGAACAGTGATTCGTGTGCCATCGCGCGCACTTCCAATTTGAACGAGGAGCTTGGGCAGGTGAAGTACATCATGTCTGATAAGACTGGCACACTGACAAGAAATGTGATGAAGTTCAAACGGGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>280 105 100 91 80 71 61 61 54 31 16 15 11 9 8 7</canonical_bands>
                <polymorphic_bands>280 115 105 100 91 80 71 61 31 16 15 11 9 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGATCTTAAGCCTATTTACTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATGAAGAATGTCAGCACAC</pcr_primer_p2>
		<pcr_amplicon_size>981</pcr_amplicon_size>
		<canonical_amplicon>CAATTTTGAGTTTTTGACCTAAGCGTTGCGGTCGCGTCGCGGTTCGGTAGGTCAAAATTCAAAGTTGAGCTAAACTAGTCGTGATTAGGCTGATTTTTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTT</canonical_amplicon>
		<polymorphic_amplicon>CRATTTTGAGTTTTTGACCTAAGCGTTGCGGTCGCGTCGCGGTTCGGTAGGTCAAAATTCAAAGTTGAGCTAAACTAGTCGTGATTAGGCTGATTTTTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38139</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>182596</contig_pos>
        <strand></strand>
        <context>actagtcgtg[A/T]ttrggctsat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCGTCGCGGTTCGGTAGGTCAAAATTCAAAGTTGAGCTAAACTAGTCGTG</left_flank>
        <right_flank>TTAGGCTGATTTTTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCCTGTAACTTGACTCCCCCTAGACCAAATTTTTTGAAAATTGCACTATTCGACAGGAAATGGTGAGAGCTTCAAAATGAGTATAATCATGATCTACTTTTTTTTTTCAAATTTCGAAATCTGGACCTCTATGCGCCTTTAAAGTCGAAAAACCAAAGCGGGCGGAGTCTGGTCGTGTTTGAGCTCATCTTAAAGCGCAAAAAACGACAAATTCAGATGTTTTGGAATTTTTGAATTTGAAAAATGATTGGCCGAGTCACGGTAGTCGCGTCTTTTGAAGTCAAAAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTGAAAGCTCTTGACAAGCCGAATTTAAAATTTTTGGAATTCTCAAGTTCTAGAGATTGAGAGCTTCAAAATGAGACCAAACACGACTAGTTTCCCTCAATTTTGAGTTTTTGACCTAAGCGTTGCGGTCGCGTCGCGGTTCGGTAGGTCAAAATTCAAAGTTGAGCTAAACTAGTCGTGATTAGGCTGATTTTTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTTTGTACAACAACCTAATCCCGATTTCCCTCCAAGTCACCCTGGAAATCGTGCGTTTCTTCCAAGCGATCTATATCAATAATGATATTGAAATGTACGATGTGAACAGTGATTCGTGTGCCATCGCGCGCACTTCCAATTTGAACGAGGAGCTTGGGCAGGTGAAGTACATCATGTCTGATAAGACTGGCACACTGACAAGAAATGTGATGAAGTTCAAACGGGTTTCTATTGGATCACACAACTATGGAAATAACGAGGATGACGAGTTTTCGGACGCCACACTTTTAGAAGACGTCGAGAGAGGAGA</canonical>
            <polymorphic>TTGCCTGTAACTTGACTCCCCCTAGACCAAATTTTTTGAAAATTGCACTATTCGACAGGAAATGGTGAGAGCTTCAAAATGAGTATAATCATGATCTACTTTTTTTTTTCAAATTTCGAAATCTGGACCTCTATGCGCCTTTAAAGTCGAAAAACCAAAGCGGGCGGAGTCTGGTCGTGTTTGAGCTCATCTTAAAGCGCAAAAAACGACAAATTCAGATGTTTTGGAATTTTTGAATTTGAAAAATGATTGGCCGAGTCACGGTAGTCGCGTCTTTTGAAGTCAAAAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTGAAAGCTCTTGACAAGCCGAATTTAAAATTTTTGGAATTCTCAAGTTCTAGAGATTGAGAGCTTCAAAATGAGACCAAACACGACTAGTTTCCCTCAATTTTGAGTTTTTGACCTAAGCGTTGCGGTCGCGTCGCGGTTCGGTAGGTCAAAATTCAAAGTTGAGCTAAACTAGTCGTGWTTAGGCTGATTTTTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTTTGTACAACAACCTAATCCCGATTTCCCTCCAAGTCACCCTGGAAATCGTGCGTTTCTTCCAAGCGATCTATATCAATAATGATATTGAAATGTACGATGTGAACAGTGATTCGTGTGCCATCGCGCGCACTTCCAATTTGAACGAGGAGCTTGGGCAGGTGAAGTACATCATGTCTGATAAGACTGGCACACTGACAAGAAATGTGATGAAGTTCAAACGGGTTTCTATTGGATCACACAACTATGGAAATAACGAGGATGACGAGTTTTCGGACGCCACACTTTTAGAAGACGTCGAGAGAGGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>279 214 206 127 90 40 33 11</canonical_bands>
                <polymorphic_bands>341 279 206 90 40 33 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGATCTTAAGCCTATTTACTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATGAAGAATGTCAGCACAC</pcr_primer_p2>
		<pcr_amplicon_size>981</pcr_amplicon_size>
		<canonical_amplicon>GATTAGGCTGATTTTTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTT</canonical_amplicon>
		<polymorphic_amplicon>GWTTAGGCTGATTTTTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38140</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>182599</contig_pos>
        <strand></strand>
        <context>agtcgtgwtt[A/G]ggctsatttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGCGGTTCGGTAGGTCAAAATTCAAAGTTGAGCTAAACTAGTCGTGATT</left_flank>
        <right_flank>GGCTGATTTTTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGTAACTTGACTCCCCCTAGACCAAATTTTTTGAAAATTGCACTATTCGACAGGAAATGGTGAGAGCTTCAAAATGAGTATAATCATGATCTACTTTTTTTTTTCAAATTTCGAAATCTGGACCTCTATGCGCCTTTAAAGTCGAAAAACCAAAGCGGGCGGAGTCTGGTCGTGTTTGAGCTCATCTTAAAGCGCAAAAAACGACAAATTCAGATGTTTTGGAATTTTTGAATTTGAAAAATGATTGGCCGAGTCACGGTAGTCGCGTCTTTTGAAGTCAAAAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTGAAAGCTCTTGACAAGCCGAATTTAAAATTTTTGGAATTCTCAAGTTCTAGAGATTGAGAGCTTCAAAATGAGACCAAACACGACTAGTTTCCCTCAATTTTGAGTTTTTGACCTAAGCGTTGCGGTCGCGTCGCGGTTCGGTAGGTCAAAATTCAAAGTTGAGCTAAACTAGTCGTGATTAGGCTGATTTTTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTTTGTACAACAACCTAATCCCGATTTCCCTCCAAGTCACCCTGGAAATCGTGCGTTTCTTCCAAGCGATCTATATCAATAATGATATTGAAATGTACGATGTGAACAGTGATTCGTGTGCCATCGCGCGCACTTCCAATTTGAACGAGGAGCTTGGGCAGGTGAAGTACATCATGTCTGATAAGACTGGCACACTGACAAGAAATGTGATGAAGTTCAAACGGGTTTCTATTGGATCACACAACTATGGAAATAACGAGGATGACGAGTTTTCGGACGCCACACTTTTAGAAGACGTCGAGAGAGGAGATAA</canonical>
            <polymorphic>CCTGTAACTTGACTCCCCCTAGACCAAATTTTTTGAAAATTGCACTATTCGACAGGAAATGGTGAGAGCTTCAAAATGAGTATAATCATGATCTACTTTTTTTTTTCAAATTTCGAAATCTGGACCTCTATGCGCCTTTAAAGTCGAAAAACCAAAGCGGGCGGAGTCTGGTCGTGTTTGAGCTCATCTTAAAGCGCAAAAAACGACAAATTCAGATGTTTTGGAATTTTTGAATTTGAAAAATGATTGGCCGAGTCACGGTAGTCGCGTCTTTTGAAGTCAAAAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTGAAAGCTCTTGACAAGCCGAATTTAAAATTTTTGGAATTCTCAAGTTCTAGAGATTGAGAGCTTCAAAATGAGACCAAACACGACTAGTTTCCCTCAATTTTGAGTTTTTGACCTAAGCGTTGCGGTCGCGTCGCGGTTCGGTAGGTCAAAATTCAAAGTTGAGCTAAACTAGTCGTGATTRGGCTGATTTTTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTTTGTACAACAACCTAATCCCGATTTCCCTCCAAGTCACCCTGGAAATCGTGCGTTTCTTCCAAGCGATCTATATCAATAATGATATTGAAATGTACGATGTGAACAGTGATTCGTGTGCCATCGCGCGCACTTCCAATTTGAACGAGGAGCTTGGGCAGGTGAAGTACATCATGTCTGATAAGACTGGCACACTGACAAGAAATGTGATGAAGTTCAAACGGGTTTCTATTGGATCACACAACTATGGAAATAACGAGGATGACGAGTTTTCGGACGCCACACTTTTAGAAGACGTCGAGAGAGGAGATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGATCTTAAGCCTATTTACTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATGAAGAATGTCAGCACAC</pcr_primer_p2>
		<pcr_amplicon_size>981</pcr_amplicon_size>
		<canonical_amplicon>TAGGCTGATTTTTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTT</canonical_amplicon>
		<polymorphic_amplicon>TRGGCTGATTTTTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38141</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>182604</contig_pos>
        <strand></strand>
        <context>tgwttrggct[G/C]attttkaagc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GTTCGGTAGGTCAAAATTCAAAGTTGAGCTAAACTAGTCGTGATTAGGCT</left_flank>
        <right_flank>ATTTTTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTTGACTCCCCCTAGACCAAATTTTTTGAAAATTGCACTATTCGACAGGAAATGGTGAGAGCTTCAAAATGAGTATAATCATGATCTACTTTTTTTTTTCAAATTTCGAAATCTGGACCTCTATGCGCCTTTAAAGTCGAAAAACCAAAGCGGGCGGAGTCTGGTCGTGTTTGAGCTCATCTTAAAGCGCAAAAAACGACAAATTCAGATGTTTTGGAATTTTTGAATTTGAAAAATGATTGGCCGAGTCACGGTAGTCGCGTCTTTTGAAGTCAAAAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTGAAAGCTCTTGACAAGCCGAATTTAAAATTTTTGGAATTCTCAAGTTCTAGAGATTGAGAGCTTCAAAATGAGACCAAACACGACTAGTTTCCCTCAATTTTGAGTTTTTGACCTAAGCGTTGCGGTCGCGTCGCGGTTCGGTAGGTCAAAATTCAAAGTTGAGCTAAACTAGTCGTGATTAGGCTGATTTTTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTTTGTACAACAACCTAATCCCGATTTCCCTCCAAGTCACCCTGGAAATCGTGCGTTTCTTCCAAGCGATCTATATCAATAATGATATTGAAATGTACGATGTGAACAGTGATTCGTGTGCCATCGCGCGCACTTCCAATTTGAACGAGGAGCTTGGGCAGGTGAAGTACATCATGTCTGATAAGACTGGCACACTGACAAGAAATGTGATGAAGTTCAAACGGGTTTCTATTGGATCACACAACTATGGAAATAACGAGGATGACGAGTTTTCGGACGCCACACTTTTAGAAGACGTCGAGAGAGGAGATAAGCATG</canonical>
            <polymorphic>AACTTGACTCCCCCTAGACCAAATTTTTTGAAAATTGCACTATTCGACAGGAAATGGTGAGAGCTTCAAAATGAGTATAATCATGATCTACTTTTTTTTTTCAAATTTCGAAATCTGGACCTCTATGCGCCTTTAAAGTCGAAAAACCAAAGCGGGCGGAGTCTGGTCGTGTTTGAGCTCATCTTAAAGCGCAAAAAACGACAAATTCAGATGTTTTGGAATTTTTGAATTTGAAAAATGATTGGCCGAGTCACGGTAGTCGCGTCTTTTGAAGTCAAAAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTGAAAGCTCTTGACAAGCCGAATTTAAAATTTTTGGAATTCTCAAGTTCTAGAGATTGAGAGCTTCAAAATGAGACCAAACACGACTAGTTTCCCTCAATTTTGAGTTTTTGACCTAAGCGTTGCGGTCGCGTCGCGGTTCGGTAGGTCAAAATTCAAAGTTGAGCTAAACTAGTCGTGATTAGGCTSATTTTTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTTTGTACAACAACCTAATCCCGATTTCCCTCCAAGTCACCCTGGAAATCGTGCGTTTCTTCCAAGCGATCTATATCAATAATGATATTGAAATGTACGATGTGAACAGTGATTCGTGTGCCATCGCGCGCACTTCCAATTTGAACGAGGAGCTTGGGCAGGTGAAGTACATCATGTCTGATAAGACTGGCACACTGACAAGAAATGTGATGAAGTTCAAACGGGTTTCTATTGGATCACACAACTATGGAAATAACGAGGATGACGAGTTTTCGGACGCCACACTTTTAGAAGACGTCGAGAGAGGAGATAAGCATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGATCTTAAGCCTATTTACTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATGAAGAATGTCAGCACAC</pcr_primer_p2>
		<pcr_amplicon_size>981</pcr_amplicon_size>
		<canonical_amplicon>TGATTTTTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTT</canonical_amplicon>
		<polymorphic_amplicon>TSATTTTTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38142</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>182610</contig_pos>
        <strand></strand>
        <context>ggctsatttt[T/G]aagctagaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TAGGTCAAAATTCAAAGTTGAGCTAAACTAGTCGTGATTAGGCTGATTTT</left_flank>
        <right_flank>AAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTCCCCCTAGACCAAATTTTTTGAAAATTGCACTATTCGACAGGAAATGGTGAGAGCTTCAAAATGAGTATAATCATGATCTACTTTTTTTTTTCAAATTTCGAAATCTGGACCTCTATGCGCCTTTAAAGTCGAAAAACCAAAGCGGGCGGAGTCTGGTCGTGTTTGAGCTCATCTTAAAGCGCAAAAAACGACAAATTCAGATGTTTTGGAATTTTTGAATTTGAAAAATGATTGGCCGAGTCACGGTAGTCGCGTCTTTTGAAGTCAAAAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTGAAAGCTCTTGACAAGCCGAATTTAAAATTTTTGGAATTCTCAAGTTCTAGAGATTGAGAGCTTCAAAATGAGACCAAACACGACTAGTTTCCCTCAATTTTGAGTTTTTGACCTAAGCGTTGCGGTCGCGTCGCGGTTCGGTAGGTCAAAATTCAAAGTTGAGCTAAACTAGTCGTGATTAGGCTGATTTTTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTTTGTACAACAACCTAATCCCGATTTCCCTCCAAGTCACCCTGGAAATCGTGCGTTTCTTCCAAGCGATCTATATCAATAATGATATTGAAATGTACGATGTGAACAGTGATTCGTGTGCCATCGCGCGCACTTCCAATTTGAACGAGGAGCTTGGGCAGGTGAAGTACATCATGTCTGATAAGACTGGCACACTGACAAGAAATGTGATGAAGTTCAAACGGGTTTCTATTGGATCACACAACTATGGAAATAACGAGGATGACGAGTTTTCGGACGCCACACTTTTAGAAGACGTCGAGAGAGGAGATAAGCATGCGGAAG</canonical>
            <polymorphic>ACTCCCCCTAGACCAAATTTTTTGAAAATTGCACTATTCGACAGGAAATGGTGAGAGCTTCAAAATGAGTATAATCATGATCTACTTTTTTTTTTCAAATTTCGAAATCTGGACCTCTATGCGCCTTTAAAGTCGAAAAACCAAAGCGGGCGGAGTCTGGTCGTGTTTGAGCTCATCTTAAAGCGCAAAAAACGACAAATTCAGATGTTTTGGAATTTTTGAATTTGAAAAATGATTGGCCGAGTCACGGTAGTCGCGTCTTTTGAAGTCAAAAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTGAAAGCTCTTGACAAGCCGAATTTAAAATTTTTGGAATTCTCAAGTTCTAGAGATTGAGAGCTTCAAAATGAGACCAAACACGACTAGTTTCCCTCAATTTTGAGTTTTTGACCTAAGCGTTGCGGTCGCGTCGCGGTTCGGTAGGTCAAAATTCAAAGTTGAGCTAAACTAGTCGTGATTAGGCTGATTTTKAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTTTGTACAACAACCTAATCCCGATTTCCCTCCAAGTCACCCTGGAAATCGTGCGTTTCTTCCAAGCGATCTATATCAATAATGATATTGAAATGTACGATGTGAACAGTGATTCGTGTGCCATCGCGCGCACTTCCAATTTGAACGAGGAGCTTGGGCAGGTGAAGTACATCATGTCTGATAAGACTGGCACACTGACAAGAAATGTGATGAAGTTCAAACGGGTTTCTATTGGATCACACAACTATGGAAATAACGAGGATGACGAGTTTTCGGACGCCACACTTTTAGAAGACGTCGAGAGAGGAGATAAGCATGCGGAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>501 169 152 127 51</canonical_bands>
                <polymorphic_bands>670 152 127 51</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGATCTTAAGCCTATTTACTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATGAAGAATGTCAGCACAC</pcr_primer_p2>
		<pcr_amplicon_size>981</pcr_amplicon_size>
		<canonical_amplicon>TTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTT</canonical_amplicon>
		<polymorphic_amplicon>TKAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38143</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>182624</contig_pos>
        <strand></strand>
        <context>ctagaaaaac[G/A]agaaaattag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAGTTGAGCTAAACTAGTCGTGATTAGGCTGATTTTTAAGCTAGAAAAAC</left_flank>
        <right_flank>AGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTTTTGAAAATTGCACTATTCGACAGGAAATGGTGAGAGCTTCAAAATGAGTATAATCATGATCTACTTTTTTTTTTCAAATTTCGAAATCTGGACCTCTATGCGCCTTTAAAGTCGAAAAACCAAAGCGGGCGGAGTCTGGTCGTGTTTGAGCTCATCTTAAAGCGCAAAAAACGACAAATTCAGATGTTTTGGAATTTTTGAATTTGAAAAATGATTGGCCGAGTCACGGTAGTCGCGTCTTTTGAAGTCAAAAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTGAAAGCTCTTGACAAGCCGAATTTAAAATTTTTGGAATTCTCAAGTTCTAGAGATTGAGAGCTTCAAAATGAGACCAAACACGACTAGTTTCCCTCAATTTTGAGTTTTTGACCTAAGCGTTGCGGTCGCGTCGCGGTTCGGTAGGTCAAAATTCAAAGTTGAGCTAAACTAGTCGTGATTAGGCTGATTTTTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTTTGTACAACAACCTAATCCCGATTTCCCTCCAAGTCACCCTGGAAATCGTGCGTTTCTTCCAAGCGATCTATATCAATAATGATATTGAAATGTACGATGTGAACAGTGATTCGTGTGCCATCGCGCGCACTTCCAATTTGAACGAGGAGCTTGGGCAGGTGAAGTACATCATGTCTGATAAGACTGGCACACTGACAAGAAATGTGATGAAGTTCAAACGGGTTTCTATTGGATCACACAACTATGGAAATAACGAGGATGACGAGTTTTCGGACGCCACACTTTTAGAAGACGTCGAGAGAGGAGATAAGCATGCGGAAGCGATTGTCGAGGTT</canonical>
            <polymorphic>AAATTTTTTGAAAATTGCACTATTCGACAGGAAATGGTGAGAGCTTCAAAATGAGTATAATCATGATCTACTTTTTTTTTTCAAATTTCGAAATCTGGACCTCTATGCGCCTTTAAAGTCGAAAAACCAAAGCGGGCGGAGTCTGGTCGTGTTTGAGCTCATCTTAAAGCGCAAAAAACGACAAATTCAGATGTTTTGGAATTTTTGAATTTGAAAAATGATTGGCCGAGTCACGGTAGTCGCGTCTTTTGAAGTCAAAAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTGAAAGCTCTTGACAAGCCGAATTTAAAATTTTTGGAATTCTCAAGTTCTAGAGATTGAGAGCTTCAAAATGAGACCAAACACGACTAGTTTCCCTCAATTTTGAGTTTTTGACCTAAGCGTTGCGGTCGCGTCGCGGTTCGGTAGGTCAAAATTCAAAGTTGAGCTAAACTAGTCGTGATTAGGCTGATTTTTAAGCTAGAAAAACRAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTTTGTACAACAACCTAATCCCGATTTCCCTCCAAGTCACCCTGGAAATCGTGCGTTTCTTCCAAGCGATCTATATCAATAATGATATTGAAATGTACGATGTGAACAGTGATTCGTGTGCCATCGCGCGCACTTCCAATTTGAACGAGGAGCTTGGGCAGGTGAAGTACATCATGTCTGATAAGACTGGCACACTGACAAGAAATGTGATGAAGTTCAAACGGGTTTCTATTGGATCACACAACTATGGAAATAACGAGGATGACGAGTTTTCGGACGCCACACTTTTAGAAGACGTCGAGAGAGGAGATAAGCATGCGGAAGCGATTGTCGAGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGATCTTAAGCCTATTTACTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATGAAGAATGTCAGCACAC</pcr_primer_p2>
		<pcr_amplicon_size>981</pcr_amplicon_size>
		<canonical_amplicon>CGAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTT</canonical_amplicon>
		<polymorphic_amplicon>CRAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38144</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>182654</contig_pos>
        <strand></strand>
        <context>aatttttgag[T/G]tttagccaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GATTTTTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAG</left_flank>
        <right_flank>TTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATGGTGAGAGCTTCAAAATGAGTATAATCATGATCTACTTTTTTTTTTCAAATTTCGAAATCTGGACCTCTATGCGCCTTTAAAGTCGAAAAACCAAAGCGGGCGGAGTCTGGTCGTGTTTGAGCTCATCTTAAAGCGCAAAAAACGACAAATTCAGATGTTTTGGAATTTTTGAATTTGAAAAATGATTGGCCGAGTCACGGTAGTCGCGTCTTTTGAAGTCAAAAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTGAAAGCTCTTGACAAGCCGAATTTAAAATTTTTGGAATTCTCAAGTTCTAGAGATTGAGAGCTTCAAAATGAGACCAAACACGACTAGTTTCCCTCAATTTTGAGTTTTTGACCTAAGCGTTGCGGTCGCGTCGCGGTTCGGTAGGTCAAAATTCAAAGTTGAGCTAAACTAGTCGTGATTAGGCTGATTTTTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTTTGTACAACAACCTAATCCCGATTTCCCTCCAAGTCACCCTGGAAATCGTGCGTTTCTTCCAAGCGATCTATATCAATAATGATATTGAAATGTACGATGTGAACAGTGATTCGTGTGCCATCGCGCGCACTTCCAATTTGAACGAGGAGCTTGGGCAGGTGAAGTACATCATGTCTGATAAGACTGGCACACTGACAAGAAATGTGATGAAGTTCAAACGGGTTTCTATTGGATCACACAACTATGGAAATAACGAGGATGACGAGTTTTCGGACGCCACACTTTTAGAAGACGTCGAGAGAGGAGATAAGCATGCGGAAGCGATTGTCGAGGTTTTGAAGGTGAGCAATTTTTAAAATTTGATT</canonical>
            <polymorphic>GAAATGGTGAGAGCTTCAAAATGAGTATAATCATGATCTACTTTTTTTTTTCAAATTTCGAAATCTGGACCTCTATGCGCCTTTAAAGTCGAAAAACCAAAGCGGGCGGAGTCTGGTCGTGTTTGAGCTCATCTTAAAGCGCAAAAAACGACAAATTCAGATGTTTTGGAATTTTTGAATTTGAAAAATGATTGGCCGAGTCACGGTAGTCGCGTCTTTTGAAGTCAAAAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTGAAAGCTCTTGACAAGCCGAATTTAAAATTTTTGGAATTCTCAAGTTCTAGAGATTGAGAGCTTCAAAATGAGACCAAACACGACTAGTTTCCCTCAATTTTGAGTTTTTGACCTAAGCGTTGCGGTCGCGTCGCGGTTCGGTAGGTCAAAATTCAAAGTTGAGCTAAACTAGTCGTGATTAGGCTGATTTTTAAGCTAGAAAAACGAGAAAATTAGATTTGGTAAAATTTTTGAGKTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTTTGTACAACAACCTAATCCCGATTTCCCTCCAAGTCACCCTGGAAATCGTGCGTTTCTTCCAAGCGATCTATATCAATAATGATATTGAAATGTACGATGTGAACAGTGATTCGTGTGCCATCGCGCGCACTTCCAATTTGAACGAGGAGCTTGGGCAGGTGAAGTACATCATGTCTGATAAGACTGGCACACTGACAAGAAATGTGATGAAGTTCAAACGGGTTTCTATTGGATCACACAACTATGGAAATAACGAGGATGACGAGTTTTCGGACGCCACACTTTTAGAAGACGTCGAGAGAGGAGATAAGCATGCGGAAGCGATTGTCGAGGTTTTGAAGGTGAGCAATTTTTAAAATTTGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGATCTTAAGCCTATTTACTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATGAAGAATGTCAGCACAC</pcr_primer_p2>
		<pcr_amplicon_size>981</pcr_amplicon_size>
		<canonical_amplicon>GTTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTT</canonical_amplicon>
		<polymorphic_amplicon>GKTTTAGCCAAATCTGAAGGGGGTTACAGCAGGAATGGGCGGAGCCTAGTCGCATTTGGGCTCATTTTGAAGCTATATATTTGCAGAACACGATCCGAAGGGTTCGTTCCTGTGGGGTGTGCTGACATTCTTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38145</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>183950</contig_pos>
        <strand>+</strand>
        <context>CCTAAATGAC[A/T]GATTTTTGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTTGGCCTACCACTTCATTTTGTGGCCCAAAAAAAAGCACCTAAATGAC</left_flank>
        <right_flank>GATTTTTGCTCGAATTTTTAAATTTTTTAGCGAAAAATTTTCCAGATGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACGTGGTCCTATCTTTCTGAAACTTGGTACATCTAGGTTTTTGACTATGCTAGACAAAAACCTGTTGAAATTTTCAGAATTTTAAGTTTTTAGACTCCGCCCACCTTTACCCTAAACTAAAATGACCTATTTTTGGGATTGCATGTGGGCGGAGCCTATTTTTCGAAAATGGTCCAATCGTTCTGAAAATTGGTACATCTACCAAATCGACACTGGCAATTTCAAATATCACACTTCCAAGTGGCCTAAAAAACCGGGAATTCGGGTTTCTAGGCCACCAAGGTTTTCGAACGCGCCAAAAGCGCACCAGCCTCTCTCAAATGTCTGTCTGTGTGTCCAGATGTCCGTTTTAGGCCATTTTTTTGCGTTCTTTCTGATTTTCAGCGAATTTTTAGTCGTTCTATATTCGGAAAGTTGGGTTTCTAGGCCACCAAAGTTTCGGGCTGATCTTTGGCCTACCACTTCATTTTGTGGCCCAAAAAAAAGCACCTAAATGACAGATTTTTGCTCGAATTTTTAAATTTTTTAGCGAAAAATTTTCCAGATGATGGCCGTGTGTCATACTGTAGTTCCGGAGAACAAGGACGACGGAGAGTTGATCTACCAATCGAGCAGTCCGGACGAGGCGGCACTGGTCCGTGGAGCGGCGTCTCAAAAAGTGACATTCCACACGAGACAACCCCAAAAAGTGATATGTAATGTATTTGGGACGGATGAGACGATCGAAATCCTAGATGTCATTGATTTCACATCGGATAGAAAGCGGATGAGTGTGATAGTCAGAGATCAAGAAGGAGAGATCAAACTATATACGAAAGGAGCGGATACCGTAATCTTCGAGCGCCTTGTGAGAGGATCTGAGCAATCCGTCGACTGGTGTACTGATCATTTGGAAGACTACGCCTCGTTTGGATACCGTACACTTTGTTTTGCAGTTCGAAAACTGTCAGATGGAGAGTATGAGCAATGGGCGCCAGAATACAAGAAGGCGATACTGGC</canonical>
            <polymorphic>TACGTGGTCCTATCTTTCTGAAACTTGGTACATCTAGGTTTTTGACTATGCTAGACAAAAACCTGTTGAAATTTTCAGAATTTTAAGTTTTTAGACTCCGCCCACCTTTACCCTAAACTAAAATGACCTATTTTTGGGATTGCATGTGGGCGGAGCCTATTTTTCGAAAATGGTCCAATCGTTCTGAAAATTGGTACATCTACCAAATCGACACTGGCAATTTCAAATATCACACTTCCAAGTGGCCTAAAAAACCGGGAATTCGGGTTTCTAGGCCACCAAGGTTTTCGAACGCGCCAAAAGCGCACCAGCCTCTCTCAAATGTCTGTCTGTGTGTCCAGATGTCCGTTTTAGGCCATTTTTTTGCGTTCTTTCTGATTTTCAGCGAATTTTTAGTCGTTCTATATTCGGAAAGTTGGGTTTCTAGGCCACCAAAGTTTCGGGCTGATCTTTGGCCTACCACTTCATTTTGTGGCCCAAAAAAAAGCACCTAAATGACWGATTTTTGCTCGAATTTTTAAATTTTTTAGCGAAAAATTTTCCAGATGATGGCCGTGTGTCATACTGTAGTTCCGGAGAACAAGGACGACGGAGAGTTGATCTACCAATCGAGCAGTCCGGACGAGGCGGCACTGGTCCGTGGAGCGGCGTCTCAAAAAGTGACATTCCACACGAGACAACCCCAAAAAGTGATATGTAATGTATTTGGGACGGATGAGACGATCGAAATCCTAGATGTCATTGATTTCACATCGGATAGAAAGCGGATGAGTGTGATAGTCAGAGATCAAGAAGGAGAGATCAAACTATATACGAAAGGAGCGGATACCGTAATCTTCGAGCGCCTTGTGAGAGGATCTGAGCAATCCGTCGACTGGTGTACTGATCATTTGGAAGACTACGCCTCGTTTGGATACCGTACACTTTGTTTTGCAGTTCGAAAACTGTCAGATGGAGAGTATGAGCAATGGGCGCCAGAATACAAGAAGGCGATACTGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGCGTTCTTTCTGATTTTC</pcr_primer_p1>
		<pcr_primer_p2>CTCGATTGGTAGATCAACTCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGCGTTCTTTCTGATTTTCAGCGAATTTTTAGTCGTTCTATATTCGGAAAGTTGGGTTTCTAGGCCACCAAAGTTTCGGGCTGATCTTTGGCCTACCACTTCATTTTGTGGCCCAAAAAAAAGCACCTAAATGACAGATTTTTGCTCGAATTTTTAAATTTTTTAGCGAAAAATTTTCCAGATGATGGCCGTGTGTCATACTGTAGTTCCGGAGAACAAGGACGACGGAGAGTTGATCTACCAATCGAG</canonical_amplicon>
		<polymorphic_amplicon>TTGCGTTCTTTCTGATTTTCAGCGAATTTTTAGTCGTTCTATATTCGGAAAGTTGGGTTTCTAGGCCACCAAAGTTTCGGGCTGATCTTTGGCCTACCACTTCATTTTGTGGCCCAAAAAAAAGCACCTAAATGACWGATTTTTGCTCGAATTTTTAAATTTTTTAGCGAAAAATTTTCCAGATGATGGCCGTGTGTCATACTGTAGTTCCGGAGAACAAGGACGACGGAGAGTTGATCTACCAATCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38146</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>183969</contig_pos>
        <strand>+</strand>
        <context>CTCGAATTTT[A/T]AAATTTTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGTGGCCCAAAAAAAAGCACCTAAATGACAGATTTTTGCTCGAATTTT</left_flank>
        <right_flank>AAATTTTTTAGCGAAAAATTTTCCAGATGATGGCCGTGTGTCATACTGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAACTTGGTACATCTAGGTTTTTGACTATGCTAGACAAAAACCTGTTGAAATTTTCAGAATTTTAAGTTTTTAGACTCCGCCCACCTTTACCCTAAACTAAAATGACCTATTTTTGGGATTGCATGTGGGCGGAGCCTATTTTTCGAAAATGGTCCAATCGTTCTGAAAATTGGTACATCTACCAAATCGACACTGGCAATTTCAAATATCACACTTCCAAGTGGCCTAAAAAACCGGGAATTCGGGTTTCTAGGCCACCAAGGTTTTCGAACGCGCCAAAAGCGCACCAGCCTCTCTCAAATGTCTGTCTGTGTGTCCAGATGTCCGTTTTAGGCCATTTTTTTGCGTTCTTTCTGATTTTCAGCGAATTTTTAGTCGTTCTATATTCGGAAAGTTGGGTTTCTAGGCCACCAAAGTTTCGGGCTGATCTTTGGCCTACCACTTCATTTTGTGGCCCAAAAAAAAGCACCTAAATGACAGATTTTTGCTCGAATTTTTAAATTTTTTAGCGAAAAATTTTCCAGATGATGGCCGTGTGTCATACTGTAGTTCCGGAGAACAAGGACGACGGAGAGTTGATCTACCAATCGAGCAGTCCGGACGAGGCGGCACTGGTCCGTGGAGCGGCGTCTCAAAAAGTGACATTCCACACGAGACAACCCCAAAAAGTGATATGTAATGTATTTGGGACGGATGAGACGATCGAAATCCTAGATGTCATTGATTTCACATCGGATAGAAAGCGGATGAGTGTGATAGTCAGAGATCAAGAAGGAGAGATCAAACTATATACGAAAGGAGCGGATACCGTAATCTTCGAGCGCCTTGTGAGAGGATCTGAGCAATCCGTCGACTGGTGTACTGATCATTTGGAAGACTACGCCTCGTTTGGATACCGTACACTTTGTTTTGCAGTTCGAAAACTGTCAGATGGAGAGTATGAGCAATGGGCGCCAGAATACAAGAAGGCGATACTGGCAATTGAGAATAGAGCGAAA</canonical>
            <polymorphic>GAAACTTGGTACATCTAGGTTTTTGACTATGCTAGACAAAAACCTGTTGAAATTTTCAGAATTTTAAGTTTTTAGACTCCGCCCACCTTTACCCTAAACTAAAATGACCTATTTTTGGGATTGCATGTGGGCGGAGCCTATTTTTCGAAAATGGTCCAATCGTTCTGAAAATTGGTACATCTACCAAATCGACACTGGCAATTTCAAATATCACACTTCCAAGTGGCCTAAAAAACCGGGAATTCGGGTTTCTAGGCCACCAAGGTTTTCGAACGCGCCAAAAGCGCACCAGCCTCTCTCAAATGTCTGTCTGTGTGTCCAGATGTCCGTTTTAGGCCATTTTTTTGCGTTCTTTCTGATTTTCAGCGAATTTTTAGTCGTTCTATATTCGGAAAGTTGGGTTTCTAGGCCACCAAAGTTTCGGGCTGATCTTTGGCCTACCACTTCATTTTGTGGCCCAAAAAAAAGCACCTAAATGACAGATTTTTGCTCGAATTTTWAAATTTTTTAGCGAAAAATTTTCCAGATGATGGCCGTGTGTCATACTGTAGTTCCGGAGAACAAGGACGACGGAGAGTTGATCTACCAATCGAGCAGTCCGGACGAGGCGGCACTGGTCCGTGGAGCGGCGTCTCAAAAAGTGACATTCCACACGAGACAACCCCAAAAAGTGATATGTAATGTATTTGGGACGGATGAGACGATCGAAATCCTAGATGTCATTGATTTCACATCGGATAGAAAGCGGATGAGTGTGATAGTCAGAGATCAAGAAGGAGAGATCAAACTATATACGAAAGGAGCGGATACCGTAATCTTCGAGCGCCTTGTGAGAGGATCTGAGCAATCCGTCGACTGGTGTACTGATCATTTGGAAGACTACGCCTCGTTTGGATACCGTACACTTTGTTTTGCAGTTCGAAAACTGTCAGATGGAGAGTATGAGCAATGGGCGCCAGAATACAAGAAGGCGATACTGGCAATTGAGAATAGAGCGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>501 435 64</canonical_bands>
                <polymorphic_bands>936 64</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGCGTTCTTTCTGATTTTC</pcr_primer_p1>
		<pcr_primer_p2>CTCGATTGGTAGATCAACTCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGCGTTCTTTCTGATTTTCAGCGAATTTTTAGTCGTTCTATATTCGGAAAGTTGGGTTTCTAGGCCACCAAAGTTTCGGGCTGATCTTTGGCCTACCACTTCATTTTGTGGCCCAAAAAAAAGCACCTAAATGACAGATTTTTGCTCGAATTTTTAAATTTTTTAGCGAAAAATTTTCCAGATGATGGCCGTGTGTCATACTGTAGTTCCGGAGAACAAGGACGACGGAGAGTTGATCTACCAATCGAG</canonical_amplicon>
		<polymorphic_amplicon>TTGCGTTCTTTCTGATTTTCAGCGAATTTTTAGTCGTTCTATATTCGGAAAGTTGGGTTTCTAGGCCACCAAAGTTTCGGGCTGATCTTTGGCCTACCACTTCATTTTGTGGCCCAAAAAAAAGCACCTAAATGACAGATTTTTGCTCGAATTTTWAAATTTTTTAGCGAAAAATTTTCCAGATGATGGCCGTGTGTCATACTGTAGTTCCGGAGAACAAGGACGACGGAGAGTTGATCTACCAATCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38147</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>216460</contig_pos>
        <strand>+</strand>
        <context>AACCACTCTA[A/C]GCGATGGTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACACCAAATTTGACGCGCATGTTCGAAATTTTGGGTTTAAACCACTCTA</left_flank>
        <right_flank>GCGATGGTATTTAGCTCTATTTTCGTTCCATTCGTATCAGGAGATAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCACAATTTTGCTCCGGTTTTTCGAGCTCACCGATTTGCACATAATGTCGTTTAACTTTGCGGTAATTATTTAATTATCTAATTAATTAAGTCTTTAATTGCAGGCCATGATAATTAACTTTCTGCTCATGTCGATAAGTTTGGCATTTTCTGGGCTCCTAATTTGGGATATTTGTAATATGAGAGAGGGACCAATCAAGATACGGTATCATCAAAGACTGCCACCAGCGAACATTGGAAATGATGCATGGATTAGGAGATGCGTCGTTGCTGCGGTAATTTTTTTTAGTTTAAAAAAATCTGAAATTTTCTGATTTTTCGAATATTCCAAAAAAAAATTTTTTTTTTCGTATTTTCCGACTTTTCTGAAATTTTCTAGCTAAATTCAATTCCAAAATCAAAATCCTCACATGATTTTAGCCTAGAATCGTTTTTGTTTGAAAAAAACAAACACCAAATTTGACGCGCATGTTCGAAATTTTGGGTTTAAACCACTCTACGCGATGGTATTTAGCTCTATTTTCGTTCCATTCGTATCAGGAGATAAAAATGTTGATTATGGAGTGTTTGCGGACTCAAGACATCCAATTTGACGACACTTTTCAAAAAATTCCAGAAGTTTTTTATTAATTTTCCTAATTTTCTGAAATTTTCCAGCAGAATCCATTGTCAAAATTGAATTTCTCACAGGATTTTAGCCTGGAATTGTTTTTGTTAGGATTCCCTTGTTAATTTGGTGTTTGCGGACTCAAAACACCAAATTTGACGCGCAAATTCGAAATTTTGGGTTTTAAATCGTTCAAAGCGATGGGATTGAGCTCTATTTTTGTTCCATTCGTATCAGGAGATAAAAGTTTCAATTATTGACTGTTTGCGGACTCAAAACATCGAATTTGACGGCAGTTTTTAAAAAAATTTCAAAAAAATTGTTTTCGAATTTTTCCGAATTTTATGAAACTTCCTAGCTAAATTCATTGCCAAAATCGAATTTCTCACACGA</canonical>
            <polymorphic>TCACAATTTTGCTCCGGTTTTTCGAGCTCACCGATTTGCACATAATGTCGTTTAACTTTGCGGTAATTATTTAATTATCTAATTAATTAAGTCTTTAATTGCAGGCCATGATAATTAACTTTCTGCTCATGTCGATAAGTTTGGCATTTTCTGGGCTCCTAATTTGGGATATTTGTAATATGAGAGAGGGACCAATCAAGATACGGTATCATCAAAGACTGCCACCAGCGAACATTGGAAATGATGCATGGATTAGGAGATGCGTCGTTGCTGCGGTAATTTTTTTTAGTTTAAAAAAATCTGAAATTTTCTGATTTTTCGAATATTCCAAAAAAAAATTTTTTTTTTCGTATTTTCCGACTTTTCTGAAATTTTCTAGCTAAATTCAATTCCAAAATCAAAATCCTCACATGATTTTAGCCTAGAATCGTTTTTGTTTGAAAAAAACAAACACCAAATTTGACGCGCATGTTCGAAATTTTGGGTTTAAACCACTCTAMGCGATGGTATTTAGCTCTATTTTCGTTCCATTCGTATCAGGAGATAAAAATGTTGATTATGGAGTGTTTGCGGACTCAAGACATCCAATTTGACGACACTTTTCAAAAAATTCCAGAAGTTTTTTATTAATTTTCCTAATTTTCTGAAATTTTCCAGCAGAATCCATTGTCAAAATTGAATTTCTCACAGGATTTTAGCCTGGAATTGTTTTTGTTAGGATTCCCTTGTTAATTTGGTGTTTGCGGACTCAAAACACCAAATTTGACGCGCAAATTCGAAATTTTGGGTTTTAAATCGTTCAAAGCGATGGGATTGAGCTCTATTTTTGTTCCATTCGTATCAGGAGATAAAAGTTTCAATTATTGACTGTTTGCGGACTCAAAACATCGAATTTGACGGCAGTTTTTAAAAAAATTTCAAAAAAATTGTTTTCGAATTTTTCCGAATTTTATGAAACTTCCTAGCTAAATTCATTGCCAAAATCGAATTTCTCACACGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>465 267 232 36</canonical_bands>
                <polymorphic_bands>465 303 232</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCGTATTTTCCGACTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTCAAATTGGATGTCTTGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCGTATTTTCCGACTTTTCTGAAATTTTCTAGCTAAATTCAATTCCAAAATCAAAATCCTCACATGATTTTAGCCTAGAATCGTTTTTGTTTGAAAAAAACAAACACCAAATTTGACGCGCATGTTCGAAATTTTGGGTTTAAACCACTCTACGCGATGGTATTTAGCTCTATTTTCGTTCCATTCGTATCAGGAGATAAAAATGTTGATTATGGAGTGTTTGCGGACTCAAGACATCCAATTTGAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCGTATTTTCCGACTTTTCTGAAATTTTCTAGCTAAATTCAATTCCAAAATCAAAATCCTCACATGATTTTAGCCTAGAATCGTTTTTGTTTGAAAAAAACAAACACCAAATTTGACGCGCATGTTCGAAATTTTGGGTTTAAACCACTCTAMGCGATGGTATTTAGCTCTATTTTCGTTCCATTCGTATCAGGAGATAAAAATGTTGATTATGGAGTGTTTGCGGACTCAAGACATCCAATTTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38148</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>216512</contig_pos>
        <strand>+</strand>
        <context>AGATAAAAAT[G/T]TTGAYTATGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGATGGTATTTAGCTCTATTTTCGTTCCATTCGTATCAGGAGATAAAAAT</left_flank>
        <right_flank>TTGATTATGGAGTGTTTGCGGACTCAAGACATCCAATTTGACGACACTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAACTTTGCGGTAATTATTTAATTATCTAATTAATTAAGTCTTTAATTGCAGGCCATGATAATTAACTTTCTGCTCATGTCGATAAGTTTGGCATTTTCTGGGCTCCTAATTTGGGATATTTGTAATATGAGAGAGGGACCAATCAAGATACGGTATCATCAAAGACTGCCACCAGCGAACATTGGAAATGATGCATGGATTAGGAGATGCGTCGTTGCTGCGGTAATTTTTTTTAGTTTAAAAAAATCTGAAATTTTCTGATTTTTCGAATATTCCAAAAAAAAATTTTTTTTTTCGTATTTTCCGACTTTTCTGAAATTTTCTAGCTAAATTCAATTCCAAAATCAAAATCCTCACATGATTTTAGCCTAGAATCGTTTTTGTTTGAAAAAAACAAACACCAAATTTGACGCGCATGTTCGAAATTTTGGGTTTAAACCACTCTACGCGATGGTATTTAGCTCTATTTTCGTTCCATTCGTATCAGGAGATAAAAATGTTGATTATGGAGTGTTTGCGGACTCAAGACATCCAATTTGACGACACTTTTCAAAAAATTCCAGAAGTTTTTTATTAATTTTCCTAATTTTCTGAAATTTTCCAGCAGAATCCATTGTCAAAATTGAATTTCTCACAGGATTTTAGCCTGGAATTGTTTTTGTTAGGATTCCCTTGTTAATTTGGTGTTTGCGGACTCAAAACACCAAATTTGACGCGCAAATTCGAAATTTTGGGTTTTAAATCGTTCAAAGCGATGGGATTGAGCTCTATTTTTGTTCCATTCGTATCAGGAGATAAAAGTTTCAATTATTGACTGTTTGCGGACTCAAAACATCGAATTTGACGGCAGTTTTTAAAAAAATTTCAAAAAAATTGTTTTCGAATTTTTCCGAATTTTATGAAACTTCCTAGCTAAATTCATTGCCAAAATCGAATTTCTCACACGATTTTAGCCTAGAACCGTTTTTTGTTCGAGATTCTCCTGTTCATTTCGTGTTT</canonical>
            <polymorphic>TAACTTTGCGGTAATTATTTAATTATCTAATTAATTAAGTCTTTAATTGCAGGCCATGATAATTAACTTTCTGCTCATGTCGATAAGTTTGGCATTTTCTGGGCTCCTAATTTGGGATATTTGTAATATGAGAGAGGGACCAATCAAGATACGGTATCATCAAAGACTGCCACCAGCGAACATTGGAAATGATGCATGGATTAGGAGATGCGTCGTTGCTGCGGTAATTTTTTTTAGTTTAAAAAAATCTGAAATTTTCTGATTTTTCGAATATTCCAAAAAAAAATTTTTTTTTTCGTATTTTCCGACTTTTCTGAAATTTTCTAGCTAAATTCAATTCCAAAATCAAAATCCTCACATGATTTTAGCCTAGAATCGTTTTTGTTTGAAAAAAACAAACACCAAATTTGACGCGCATGTTCGAAATTTTGGGTTTAAACCACTCTACGCGATGGTATTTAGCTCTATTTTCGTTCCATTCGTATCAGGAGATAAAAATKTTGATTATGGAGTGTTTGCGGACTCAAGACATCCAATTTGACGACACTTTTCAAAAAATTCCAGAAGTTTTTTATTAATTTTCCTAATTTTCTGAAATTTTCCAGCAGAATCCATTGTCAAAATTGAATTTCTCACAGGATTTTAGCCTGGAATTGTTTTTGTTAGGATTCCCTTGTTAATTTGGTGTTTGCGGACTCAAAACACCAAATTTGACGCGCAAATTCGAAATTTTGGGTTTTAAATCGTTCAAAGCGATGGGATTGAGCTCTATTTTTGTTCCATTCGTATCAGGAGATAAAAGTTTCAATTATTGACTGTTTGCGGACTCAAAACATCGAATTTGACGGCAGTTTTTAAAAAAATTTCAAAAAAATTGTTTTCGAATTTTTCCGAATTTTATGAAACTTCCTAGCTAAATTCATTGCCAAAATCGAATTTCTCACACGATTTTAGCCTAGAACCGTTTTTTGTTCGAGATTCTCCTGTTCATTTCGTGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAGCTAAATTCAATTCCAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAAAAGTGTCGTCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>TCTAGCTAAATTCAATTCCAAAATCAAAATCCTCACATGATTTTAGCCTAGAATCGTTTTTGTTTGAAAAAAACAAACACCAAATTTGACGCGCATGTTCGAAATTTTGGGTTTAAACCACTCTACGCGATGGTATTTAGCTCTATTTTCGTTCCATTCGTATCAGGAGATAAAAATGTTGATTATGGAGTGTTTGCGGACTCAAGACATCCAATTTGACGACACTTTTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTAGCTAAATTCAATTCCAAAATCAAAATCCTCACATGATTTTAGCCTAGAATCGTTTTTGTTTGAAAAAAACAAACACCAAATTTGACGCGCATGTTCGAAATTTTGGGTTTAAACCACTCTACGCGATGGTATTTAGCTCTATTTTCGTTCCATTCGTATCAGGAGATAAAAATKTTGATTATGGAGTGTTTGCGGACTCAAGACATCCAATTTGACGACACTTTTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38149</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>216517</contig_pos>
        <strand>+</strand>
        <context>AAAATKTTGA[C/T]TATGGAGTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTATTTAGCTCTATTTTCGTTCCATTCGTATCAGGAGATAAAAATGTTGA</left_flank>
        <right_flank>TATGGAGTGTTTGCGGACTCAAGACATCCAATTTGACGACACTTTTCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGCGGTAATTATTTAATTATCTAATTAATTAAGTCTTTAATTGCAGGCCATGATAATTAACTTTCTGCTCATGTCGATAAGTTTGGCATTTTCTGGGCTCCTAATTTGGGATATTTGTAATATGAGAGAGGGACCAATCAAGATACGGTATCATCAAAGACTGCCACCAGCGAACATTGGAAATGATGCATGGATTAGGAGATGCGTCGTTGCTGCGGTAATTTTTTTTAGTTTAAAAAAATCTGAAATTTTCTGATTTTTCGAATATTCCAAAAAAAAATTTTTTTTTTCGTATTTTCCGACTTTTCTGAAATTTTCTAGCTAAATTCAATTCCAAAATCAAAATCCTCACATGATTTTAGCCTAGAATCGTTTTTGTTTGAAAAAAACAAACACCAAATTTGACGCGCATGTTCGAAATTTTGGGTTTAAACCACTCTACGCGATGGTATTTAGCTCTATTTTCGTTCCATTCGTATCAGGAGATAAAAATGTTGATTATGGAGTGTTTGCGGACTCAAGACATCCAATTTGACGACACTTTTCAAAAAATTCCAGAAGTTTTTTATTAATTTTCCTAATTTTCTGAAATTTTCCAGCAGAATCCATTGTCAAAATTGAATTTCTCACAGGATTTTAGCCTGGAATTGTTTTTGTTAGGATTCCCTTGTTAATTTGGTGTTTGCGGACTCAAAACACCAAATTTGACGCGCAAATTCGAAATTTTGGGTTTTAAATCGTTCAAAGCGATGGGATTGAGCTCTATTTTTGTTCCATTCGTATCAGGAGATAAAAGTTTCAATTATTGACTGTTTGCGGACTCAAAACATCGAATTTGACGGCAGTTTTTAAAAAAATTTCAAAAAAATTGTTTTCGAATTTTTCCGAATTTTATGAAACTTCCTAGCTAAATTCATTGCCAAAATCGAATTTCTCACACGATTTTAGCCTAGAACCGTTTTTTGTTCGAGATTCTCCTGTTCATTTCGTGTTTGCGGA</canonical>
            <polymorphic>TTGCGGTAATTATTTAATTATCTAATTAATTAAGTCTTTAATTGCAGGCCATGATAATTAACTTTCTGCTCATGTCGATAAGTTTGGCATTTTCTGGGCTCCTAATTTGGGATATTTGTAATATGAGAGAGGGACCAATCAAGATACGGTATCATCAAAGACTGCCACCAGCGAACATTGGAAATGATGCATGGATTAGGAGATGCGTCGTTGCTGCGGTAATTTTTTTTAGTTTAAAAAAATCTGAAATTTTCTGATTTTTCGAATATTCCAAAAAAAAATTTTTTTTTTCGTATTTTCCGACTTTTCTGAAATTTTCTAGCTAAATTCAATTCCAAAATCAAAATCCTCACATGATTTTAGCCTAGAATCGTTTTTGTTTGAAAAAAACAAACACCAAATTTGACGCGCATGTTCGAAATTTTGGGTTTAAACCACTCTACGCGATGGTATTTAGCTCTATTTTCGTTCCATTCGTATCAGGAGATAAAAATGTTGAYTATGGAGTGTTTGCGGACTCAAGACATCCAATTTGACGACACTTTTCAAAAAATTCCAGAAGTTTTTTATTAATTTTCCTAATTTTCTGAAATTTTCCAGCAGAATCCATTGTCAAAATTGAATTTCTCACAGGATTTTAGCCTGGAATTGTTTTTGTTAGGATTCCCTTGTTAATTTGGTGTTTGCGGACTCAAAACACCAAATTTGACGCGCAAATTCGAAATTTTGGGTTTTAAATCGTTCAAAGCGATGGGATTGAGCTCTATTTTTGTTCCATTCGTATCAGGAGATAAAAGTTTCAATTATTGACTGTTTGCGGACTCAAAACATCGAATTTGACGGCAGTTTTTAAAAAAATTTCAAAAAAATTGTTTTCGAATTTTTCCGAATTTTATGAAACTTCCTAGCTAAATTCATTGCCAAAATCGAATTTCTCACACGATTTTAGCCTAGAACCGTTTTTTGTTCGAGATTCTCCTGTTCATTTCGTGTTTGCGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTTCGAAATTTTGGGTTTA</pcr_primer_p1>
		<pcr_primer_p2>AAAAACAATTCCAGGCTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATGTTCGAAATTTTGGGTTTAAACCACTCTACGCGATGGTATTTAGCTCTATTTTCGTTCCATTCGTATCAGGAGATAAAAATGTTGATTATGGAGTGTTTGCGGACTCAAGACATCCAATTTGACGACACTTTTCAAAAAATTCCAGAAGTTTTTTATTAATTTTCCTAATTTTCTGAAATTTTCCAGCAGAATCCATTGTCAAAATTGAATTTCTCACAGGATTTTAGCCTGGAATTGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>ATGTTCGAAATTTTGGGTTTAAACCACTCTACGCGATGGTATTTAGCTCTATTTTCGTTCCATTCGTATCAGGAGATAAAAATGTTGAYTATGGAGTGTTTGCGGACTCAAGACATCCAATTTGACGACACTTTTCAAAAAATTCCAGAAGTTTTTTATTAATTTTCCTAATTTTCTGAAATTTTCCAGCAGAATCCATTGTCAAAATTGAATTTCTCACAGGATTTTAGCCTGGAATTGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38150</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>216638</contig_pos>
        <strand>+</strand>
        <context>TGTCAAAATT[A/G]AATTTCTCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATTTTCCTAATTTTCTGAAATTTTCCAGCAGAATCCATTGTCAAAATT</left_flank>
        <right_flank>AATTTCTCACAGGATTTTAGCCTGGAATTGTTTTTGTTAGGATTCCCTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGAGAGAGGGACCAATCAAGATACGGTATCATCAAAGACTGCCACCAGCGAACATTGGAAATGATGCATGGATTAGGAGATGCGTCGTTGCTGCGGTAATTTTTTTTAGTTTAAAAAAATCTGAAATTTTCTGATTTTTCGAATATTCCAAAAAAAAATTTTTTTTTTCGTATTTTCCGACTTTTCTGAAATTTTCTAGCTAAATTCAATTCCAAAATCAAAATCCTCACATGATTTTAGCCTAGAATCGTTTTTGTTTGAAAAAAACAAACACCAAATTTGACGCGCATGTTCGAAATTTTGGGTTTAAACCACTCTACGCGATGGTATTTAGCTCTATTTTCGTTCCATTCGTATCAGGAGATAAAAATGTTGATTATGGAGTGTTTGCGGACTCAAGACATCCAATTTGACGACACTTTTCAAAAAATTCCAGAAGTTTTTTATTAATTTTCCTAATTTTCTGAAATTTTCCAGCAGAATCCATTGTCAAAATTGAATTTCTCACAGGATTTTAGCCTGGAATTGTTTTTGTTAGGATTCCCTTGTTAATTTGGTGTTTGCGGACTCAAAACACCAAATTTGACGCGCAAATTCGAAATTTTGGGTTTTAAATCGTTCAAAGCGATGGGATTGAGCTCTATTTTTGTTCCATTCGTATCAGGAGATAAAAGTTTCAATTATTGACTGTTTGCGGACTCAAAACATCGAATTTGACGGCAGTTTTTAAAAAAATTTCAAAAAAATTGTTTTCGAATTTTTCCGAATTTTATGAAACTTCCTAGCTAAATTCATTGCCAAAATCGAATTTCTCACACGATTTTAGCCTAGAACCGTTTTTTGTTCGAGATTCTCCTGTTCATTTCGTGTTTGCGGACTCAAAACACGGAATTTGACGCGCAAATTCGAAATTTTGGGCTTTCCAAGCGCGTCGGAGCGAATAGCAAATTTACAGCGTTTTCCAAATGACAAAAAAGTCCTTAAAATATAACAAAAAG</canonical>
            <polymorphic>TATGAGAGAGGGACCAATCAAGATACGGTATCATCAAAGACTGCCACCAGCGAACATTGGAAATGATGCATGGATTAGGAGATGCGTCGTTGCTGCGGTAATTTTTTTTAGTTTAAAAAAATCTGAAATTTTCTGATTTTTCGAATATTCCAAAAAAAAATTTTTTTTTTCGTATTTTCCGACTTTTCTGAAATTTTCTAGCTAAATTCAATTCCAAAATCAAAATCCTCACATGATTTTAGCCTAGAATCGTTTTTGTTTGAAAAAAACAAACACCAAATTTGACGCGCATGTTCGAAATTTTGGGTTTAAACCACTCTACGCGATGGTATTTAGCTCTATTTTCGTTCCATTCGTATCAGGAGATAAAAATGTTGATTATGGAGTGTTTGCGGACTCAAGACATCCAATTTGACGACACTTTTCAAAAAATTCCAGAAGTTTTTTATTAATTTTCCTAATTTTCTGAAATTTTCCAGCAGAATCCATTGTCAAAATTRAATTTCTCACAGGATTTTAGCCTGGAATTGTTTTTGTTAGGATTCCCTTGTTAATTTGGTGTTTGCGGACTCAAAACACCAAATTTGACGCGCAAATTCGAAATTTTGGGTTTTAAATCGTTCAAAGCGATGGGATTGAGCTCTATTTTTGTTCCATTCGTATCAGGAGATAAAAGTTTCAATTATTGACTGTTTGCGGACTCAAAACATCGAATTTGACGGCAGTTTTTAAAAAAATTTCAAAAAAATTGTTTTCGAATTTTTCCGAATTTTATGAAACTTCCTAGCTAAATTCATTGCCAAAATCGAATTTCTCACACGATTTTAGCCTAGAACCGTTTTTTGTTCGAGATTCTCCTGTTCATTTCGTGTTTGCGGACTCAAAACACGGAATTTGACGCGCAAATTCGAAATTTTGGGCTTTCCAAGCGCGTCGGAGCGAATAGCAAATTTACAGCGTTTTCCAAATGACAAAAAAGTCCTTAAAATATAACAAAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>132 126 111 83 81 74 52 39 37 33 32 31 23 23 22 20 18 13 13 13 10 7 7</canonical_bands>
                <polymorphic_bands>132 126 112 111 83 74 52 39 37 33 32 23 23 22 20 18 13 13 13 10 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTATTTTCGTTCCATTCGTATC</pcr_primer_p1>
		<pcr_primer_p2>TCAAATTTGGTGTTTTGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATTTTCGTTCCATTCGTATCAGGAGATAAAAATGTTGATTATGGAGTGTTTGCGGACTCAAGACATCCAATTTGACGACACTTTTCAAAAAATTCCAGAAGTTTTTTATTAATTTTCCTAATTTTCTGAAATTTTCCAGCAGAATCCATTGTCAAAATTGAATTTCTCACAGGATTTTAGCCTGGAATTGTTTTTGTTAGGATTCCCTTGTTAATTTGGTGTTTGCGGACTCAAAACACCAAATTTGA</canonical_amplicon>
		<polymorphic_amplicon>CTATTTTCGTTCCATTCGTATCAGGAGATAAAAATGTTGATTATGGAGTGTTTGCGGACTCAAGACATCCAATTTGACGACACTTTTCAAAAAATTCCAGAAGTTTTTTATTAATTTTCCTAATTTTCTGAAATTTTCCAGCAGAATCCATTGTCAAAATTRAATTTCTCACAGGATTTTAGCCTGGAATTGTTTTTGTTAGGATTCCCTTGTTAATTTGGTGTTTGCGGACTCAAAACACCAAATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38151</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>216650</contig_pos>
        <strand>+</strand>
        <context>ATTTCTCACA[C/G]GATTTTAGCC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTCTGAAATTTTCCAGCAGAATCCATTGTCAAAATTGAATTTCTCACA</left_flank>
        <right_flank>GATTTTAGCCTGGAATTGTTTTTGTTAGGATTCCCTTGTTAATTTGGTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAATCAAGATACGGTATCATCAAAGACTGCCACCAGCGAACATTGGAAATGATGCATGGATTAGGAGATGCGTCGTTGCTGCGGTAATTTTTTTTAGTTTAAAAAAATCTGAAATTTTCTGATTTTTCGAATATTCCAAAAAAAAATTTTTTTTTTCGTATTTTCCGACTTTTCTGAAATTTTCTAGCTAAATTCAATTCCAAAATCAAAATCCTCACATGATTTTAGCCTAGAATCGTTTTTGTTTGAAAAAAACAAACACCAAATTTGACGCGCATGTTCGAAATTTTGGGTTTAAACCACTCTACGCGATGGTATTTAGCTCTATTTTCGTTCCATTCGTATCAGGAGATAAAAATGTTGATTATGGAGTGTTTGCGGACTCAAGACATCCAATTTGACGACACTTTTCAAAAAATTCCAGAAGTTTTTTATTAATTTTCCTAATTTTCTGAAATTTTCCAGCAGAATCCATTGTCAAAATTGAATTTCTCACAGGATTTTAGCCTGGAATTGTTTTTGTTAGGATTCCCTTGTTAATTTGGTGTTTGCGGACTCAAAACACCAAATTTGACGCGCAAATTCGAAATTTTGGGTTTTAAATCGTTCAAAGCGATGGGATTGAGCTCTATTTTTGTTCCATTCGTATCAGGAGATAAAAGTTTCAATTATTGACTGTTTGCGGACTCAAAACATCGAATTTGACGGCAGTTTTTAAAAAAATTTCAAAAAAATTGTTTTCGAATTTTTCCGAATTTTATGAAACTTCCTAGCTAAATTCATTGCCAAAATCGAATTTCTCACACGATTTTAGCCTAGAACCGTTTTTTGTTCGAGATTCTCCTGTTCATTTCGTGTTTGCGGACTCAAAACACGGAATTTGACGCGCAAATTCGAAATTTTGGGCTTTCCAAGCGCGTCGGAGCGAATAGCAAATTTACAGCGTTTTCCAAATGACAAAAAAGTCCTTAAAATATAACAAAAAGTGTTTGCGGACC</canonical>
            <polymorphic>ACCAATCAAGATACGGTATCATCAAAGACTGCCACCAGCGAACATTGGAAATGATGCATGGATTAGGAGATGCGTCGTTGCTGCGGTAATTTTTTTTAGTTTAAAAAAATCTGAAATTTTCTGATTTTTCGAATATTCCAAAAAAAAATTTTTTTTTTCGTATTTTCCGACTTTTCTGAAATTTTCTAGCTAAATTCAATTCCAAAATCAAAATCCTCACATGATTTTAGCCTAGAATCGTTTTTGTTTGAAAAAAACAAACACCAAATTTGACGCGCATGTTCGAAATTTTGGGTTTAAACCACTCTACGCGATGGTATTTAGCTCTATTTTCGTTCCATTCGTATCAGGAGATAAAAATGTTGATTATGGAGTGTTTGCGGACTCAAGACATCCAATTTGACGACACTTTTCAAAAAATTCCAGAAGTTTTTTATTAATTTTCCTAATTTTCTGAAATTTTCCAGCAGAATCCATTGTCAAAATTGAATTTCTCACASGATTTTAGCCTGGAATTGTTTTTGTTAGGATTCCCTTGTTAATTTGGTGTTTGCGGACTCAAAACACCAAATTTGACGCGCAAATTCGAAATTTTGGGTTTTAAATCGTTCAAAGCGATGGGATTGAGCTCTATTTTTGTTCCATTCGTATCAGGAGATAAAAGTTTCAATTATTGACTGTTTGCGGACTCAAAACATCGAATTTGACGGCAGTTTTTAAAAAAATTTCAAAAAAATTGTTTTCGAATTTTTCCGAATTTTATGAAACTTCCTAGCTAAATTCATTGCCAAAATCGAATTTCTCACACGATTTTAGCCTAGAACCGTTTTTTGTTCGAGATTCTCCTGTTCATTTCGTGTTTGCGGACTCAAAACACGGAATTTGACGCGCAAATTCGAAATTTTGGGCTTTCCAAGCGCGTCGGAGCGAATAGCAAATTTACAGCGTTTTCCAAATGACAAAAAAGTCCTTAAAATATAACAAAAAGTGTTTGCGGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTATTTTCGTTCCATTCGTATC</pcr_primer_p1>
		<pcr_primer_p2>TCAAATTTGGTGTTTTGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTATTTTCGTTCCATTCGTATCAGGAGATAAAAATGTTGATTATGGAGTGTTTGCGGACTCAAGACATCCAATTTGACGACACTTTTCAAAAAATTCCAGAAGTTTTTTATTAATTTTCCTAATTTTCTGAAATTTTCCAGCAGAATCCATTGTCAAAATTGAATTTCTCACAGGATTTTAGCCTGGAATTGTTTTTGTTAGGATTCCCTTGTTAATTTGGTGTTTGCGGACTCAAAACACCAAATTTGA</canonical_amplicon>
		<polymorphic_amplicon>CTATTTTCGTTCCATTCGTATCAGGAGATAAAAATGTTGATTATGGAGTGTTTGCGGACTCAAGACATCCAATTTGACGACACTTTTCAAAAAATTCCAGAAGTTTTTTATTAATTTTCCTAATTTTCTGAAATTTTCCAGCAGAATCCATTGTCAAAATTGAATTTCTCACASGATTTTAGCCTGGAATTGTTTTTGTTAGGATTCCCTTGTTAATTTGGTGTTTGCGGACTCAAAACACCAAATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38152</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>216680</contig_pos>
        <strand>+</strand>
        <context>TTTTGTTAGG[A/G]TTCCCTTGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAAAATTGAATTTCTCACAGGATTTTAGCCTGGAATTGTTTTTGTTAGG</left_flank>
        <right_flank>TTCCCTTGTTAATTTGGTGTTTGCGGACTCAAAACACCAAATTTGACGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCACCAGCGAACATTGGAAATGATGCATGGATTAGGAGATGCGTCGTTGCTGCGGTAATTTTTTTTAGTTTAAAAAAATCTGAAATTTTCTGATTTTTCGAATATTCCAAAAAAAAATTTTTTTTTTCGTATTTTCCGACTTTTCTGAAATTTTCTAGCTAAATTCAATTCCAAAATCAAAATCCTCACATGATTTTAGCCTAGAATCGTTTTTGTTTGAAAAAAACAAACACCAAATTTGACGCGCATGTTCGAAATTTTGGGTTTAAACCACTCTACGCGATGGTATTTAGCTCTATTTTCGTTCCATTCGTATCAGGAGATAAAAATGTTGATTATGGAGTGTTTGCGGACTCAAGACATCCAATTTGACGACACTTTTCAAAAAATTCCAGAAGTTTTTTATTAATTTTCCTAATTTTCTGAAATTTTCCAGCAGAATCCATTGTCAAAATTGAATTTCTCACAGGATTTTAGCCTGGAATTGTTTTTGTTAGGATTCCCTTGTTAATTTGGTGTTTGCGGACTCAAAACACCAAATTTGACGCGCAAATTCGAAATTTTGGGTTTTAAATCGTTCAAAGCGATGGGATTGAGCTCTATTTTTGTTCCATTCGTATCAGGAGATAAAAGTTTCAATTATTGACTGTTTGCGGACTCAAAACATCGAATTTGACGGCAGTTTTTAAAAAAATTTCAAAAAAATTGTTTTCGAATTTTTCCGAATTTTATGAAACTTCCTAGCTAAATTCATTGCCAAAATCGAATTTCTCACACGATTTTAGCCTAGAACCGTTTTTTGTTCGAGATTCTCCTGTTCATTTCGTGTTTGCGGACTCAAAACACGGAATTTGACGCGCAAATTCGAAATTTTGGGCTTTCCAAGCGCGTCGGAGCGAATAGCAAATTTACAGCGTTTTCCAAATGACAAAAAAGTCCTTAAAATATAACAAAAAGTGTTTGCGGACCAAACACCAAACTTGACGCGCAAATTCGAAA</canonical>
            <polymorphic>GCCACCAGCGAACATTGGAAATGATGCATGGATTAGGAGATGCGTCGTTGCTGCGGTAATTTTTTTTAGTTTAAAAAAATCTGAAATTTTCTGATTTTTCGAATATTCCAAAAAAAAATTTTTTTTTTCGTATTTTCCGACTTTTCTGAAATTTTCTAGCTAAATTCAATTCCAAAATCAAAATCCTCACATGATTTTAGCCTAGAATCGTTTTTGTTTGAAAAAAACAAACACCAAATTTGACGCGCATGTTCGAAATTTTGGGTTTAAACCACTCTACGCGATGGTATTTAGCTCTATTTTCGTTCCATTCGTATCAGGAGATAAAAATGTTGATTATGGAGTGTTTGCGGACTCAAGACATCCAATTTGACGACACTTTTCAAAAAATTCCAGAAGTTTTTTATTAATTTTCCTAATTTTCTGAAATTTTCCAGCAGAATCCATTGTCAAAATTGAATTTCTCACAGGATTTTAGCCTGGAATTGTTTTTGTTAGGRTTCCCTTGTTAATTTGGTGTTTGCGGACTCAAAACACCAAATTTGACGCGCAAATTCGAAATTTTGGGTTTTAAATCGTTCAAAGCGATGGGATTGAGCTCTATTTTTGTTCCATTCGTATCAGGAGATAAAAGTTTCAATTATTGACTGTTTGCGGACTCAAAACATCGAATTTGACGGCAGTTTTTAAAAAAATTTCAAAAAAATTGTTTTCGAATTTTTCCGAATTTTATGAAACTTCCTAGCTAAATTCATTGCCAAAATCGAATTTCTCACACGATTTTAGCCTAGAACCGTTTTTTGTTCGAGATTCTCCTGTTCATTTCGTGTTTGCGGACTCAAAACACGGAATTTGACGCGCAAATTCGAAATTTTGGGCTTTCCAAGCGCGTCGGAGCGAATAGCAAATTTACAGCGTTTTCCAAATGACAAAAAAGTCCTTAAAATATAACAAAAAGTGTTTGCGGACCAAACACCAAACTTGACGCGCAAATTCGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>205 164 152 148 131 87 59 27 27</canonical_bands>
                <polymorphic_bands>205 164 152 148 131 87 86 27</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>310 235 205 191 59</canonical_bands>
                <polymorphic_bands>369 235 205 191</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAATTTTCCAGCAGAATC</pcr_primer_p1>
		<pcr_primer_p2>TCAAATTCGATGTTTTGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TGAAATTTTCCAGCAGAATCCATTGTCAAAATTGAATTTCTCACAGGATTTTAGCCTGGAATTGTTTTTGTTAGGATTCCCTTGTTAATTTGGTGTTTGCGGACTCAAAACACCAAATTTGACGCGCAAATTCGAAATTTTGGGTTTTAAATCGTTCAAAGCGATGGGATTGAGCTCTATTTTTGTTCCATTCGTATCAGGAGATAAAAGTTTCAATTATTGACTGTTTGCGGACTCAAAACATCGAATTTGA</canonical_amplicon>
		<polymorphic_amplicon>TGAAATTTTCCAGCAGAATCCATTGTCAAAATTGAATTTCTCACAGGATTTTAGCCTGGAATTGTTTTTGTTAGGRTTCCCTTGTTAATTTGGTGTTTGCGGACTCAAAACACCAAATTTGACGCGCAAATTCGAAATTTTGGGTTTTAAATCGTTCAAAGCGATGGGATTGAGCTCTATTTTTGTTCCATTCGTATCAGGAGATAAAAGTTTCAATTATTGACTGTTTGCGGACTCAAAACATCGAATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38153</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>220790</contig_pos>
        <strand></strand>
        <context>aaaaacgttg[T/C]agggtaaaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CACCTGTGGAAGCCCTAAATTGAAAGCTAGAGACGCTCGGAAAAACGTTG</left_flank>
        <right_flank>AGGGTAAAATTTTACGGAAAAATCGATTTTTATAGTTCCAAGGTCTAGCC</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCTGCTGCTGCTGTTGCTGAGCACTGACTGGTGCTCCTTGTTGTTGCTGCTGAGCAGCCTGTTGCTGTTGAGCCTGCTGCTGTTGCTGCTGGAGATGTTGCTGTTGTTGTTGTTGAATCATCGCCAGAATTTGTTGACTTTGTTGGGCCTGGAAATTTTAGATTTGAACTTTCCGACTTTTGAAAATTTTTGGGCCAAAAATTGCCTCAGATTCGTTTTTCCCATGGGTTGTTTGGTATATTTGCAAAATTCCAGGGTTCTAGCTCAAAGTGGCGTAAAATACGGTGTTTGGTCTGCAAACACCGAGGTACAGTAATCCGGAGTACGAATGGAATTCCCGGGGGCGCAATTTTACGGGAAATTCGATTTTCCTAGTTTCATGAGCTCTACAGTTCTCCGAAACATAAAAAATCTAAACTGTCGTAAGGTTCAGTGTATTGGACGCAAACACCTGTGGAAGCCCTAAATTGAAAGCTAGAGACGCTCGGAAAAACGTTGTAGGGTAAAATTTTACGGAAAAATCGATTTTTATAGTTCCAAGGTCTAGCCAACGGCCTCTAAAAGTTCAACTGTCGTGAAATCAGGTGCATTGGACGCAAACACCTTTAGATGTCTTGGATTGAGATCTAGCGACTCCCAAAAGCATGATTTCAGTGTGAAATTTTATGGAGAATCCTATTTTCAAGGTTCAAGGCTGTCTACAGTAACCCTAAACCTTGAAAACCTAAATTGTCGTAAAATCTTGTGTTTTGGACGCAATAATATCTGGAAGCTCTAAATTTAACGCTAGAGATACCATAAAACATAATATCATGGTGAAATTTCATGGAGAATCCAATTTTCAAGGTTTCAAGTCCTCTACAGTAACCCTTACCCTCGAAATTTGCATCTTTTGGCACTTCCGACTTTTCTACAGTAACCCAAAACCCCTGAAAAGTCTCACCTGCAACGCCTGCTCCCTCTGTTGCTGCATAATCATTGCTAGCGCCTGTTGTTGTG</canonical>
            <polymorphic>GCCTGCTGCTGCTGTTGCTGAGCACTGACTGGTGCTCCTTGTTGTTGCTGCTGAGCAGCCTGTTGCTGTTGAGCCTGCTGCTGTTGCTGCTGGAGATGTTGCTGTTGTTGTTGTTGAATCATCGCCAGAATTTGTTGACTTTGTTGGGCCTGGAAATTTTAGATTTGAACTTTCCGACTTTTGAAAATTTTTGGGCCAAAAATTGCCTCAGATTCGTTTTTCCCATGGGTTGTTTGGTATATTTGCAAAATTCCAGGGTTCTAGCTCAAAGTGGCGTAAAATACGGTGTTTGGTCTGCAAACACCGAGGTACAGTAATCCGGAGTACGAATGGAATTCCCGGGGGCGCAATTTTACGGGAAATTCGATTTTCCTAGTTTCATGAGCTCTACAGTTCTCCGAAACATAAAAAATCTAAACTGTCGTAAGGTTCAGTGTATTGGACGCAAACACCTGTGGAAGCCCTAAATTGAAAGCTAGAGACGCTCGGAAAAACGTTGYAGGGTAAAATTTTACGGAAAAATCGATTTTTATAGTTCCAAGGTCTAGCCAACGGCCTCTAAAAGTTCAACTGTCGTGAAATCAGGTGCATTGGACGCAAACACCTTTAGATGTCTTGGATTGAGATCTAGCGACTCCCAAAAGCATGATTTCAGTGTGAAATTTTATGGAGAATCCTATTTTCAAGGTTCAAGGCTGTCTACAGTAACCCTAAACCTTGAAAACCTAAATTGTCGTAAAATCTTGTGTTTTGGACGCAATAATATCTGGAAGCTCTAAATTTAACGCTAGAGATACCATAAAACATAATATCATGGTGAAATTTCATGGAGAATCCAATTTTCAAGGTTTCAAGTCCTCTACAGTAACCCTTACCCTCGAAATTTGCATCTTTTGGCACTTCCGACTTTTCTACAGTAACCCAAAACCCCTGAAAAGTCTCACCTGCAACGCCTGCTCCCTCTGTTGCTGCATAATCATTGCTAGCGCCTGTTGTTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTACAGTTCTCCGAAACATAA</pcr_primer_p1>
		<pcr_primer_p2>GATCTCAATCCAAGACATCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CTCTACAGTTCTCCGAAACATAAAAAATCTAAACTGTCGTAAGGTTCAGTGTATTGGACGCAAACACCTGTGGAAGCCCTAAATTGAAAGCTAGAGACGCTCGGAAAAACGTTGTAGGGTAAAATTTTACGGAAAAATCGATTTTTATAGTTCCAAGGTCTAGCCAACGGCCTCTAAAAGTTCAACTGTCGTGAAATCAGGTGCATTGGACGCAAACACCTTTAGATGTCTTGGATTGAGATC</canonical_amplicon>
		<polymorphic_amplicon>CTCTACAGTTCTCCGAAACATAAAAAATCTAAACTGTCGTAAGGTTCAGTGTATTGGACGCAAACACCTGTGGAAGCCCTAAATTGAAAGCTAGAGACGCTCGGAAAAACGTTGYAGGGTAAAATTTTACGGAAAAATCGATTTTTATAGTTCCAAGGTCTAGCCAACGGCCTCTAAAAGTTCAACTGTCGTGAAATCAGGTGCATTGGACGCAAACACCTTTAGATGTCTTGGATTGAGATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38154</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>220895</contig_pos>
        <strand>+</strand>
        <context>ACGCAAACAC[A/C]TTTAGATGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCCTCTAAAAGTTCAACTGTCGTGAAATCAGGTGCATTGGACGCAAACAC</left_flank>
        <right_flank>TTTAGATGTCTTGGATTGAGATCTAGCGACTCCCAAAAGCATGATTTCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTGTTGTTGAATCATCGCCAGAATTTGTTGACTTTGTTGGGCCTGGAAATTTTAGATTTGAACTTTCCGACTTTTGAAAATTTTTGGGCCAAAAATTGCCTCAGATTCGTTTTTCCCATGGGTTGTTTGGTATATTTGCAAAATTCCAGGGTTCTAGCTCAAAGTGGCGTAAAATACGGTGTTTGGTCTGCAAACACCGAGGTACAGTAATCCGGAGTACGAATGGAATTCCCGGGGGCGCAATTTTACGGGAAATTCGATTTTCCTAGTTTCATGAGCTCTACAGTTCTCCGAAACATAAAAAATCTAAACTGTCGTAAGGTTCAGTGTATTGGACGCAAACACCTGTGGAAGCCCTAAATTGAAAGCTAGAGACGCTCGGAAAAACGTTGTAGGGTAAAATTTTACGGAAAAATCGATTTTTATAGTTCCAAGGTCTAGCCAACGGCCTCTAAAAGTTCAACTGTCGTGAAATCAGGTGCATTGGACGCAAACACCTTTAGATGTCTTGGATTGAGATCTAGCGACTCCCAAAAGCATGATTTCAGTGTGAAATTTTATGGAGAATCCTATTTTCAAGGTTCAAGGCTGTCTACAGTAACCCTAAACCTTGAAAACCTAAATTGTCGTAAAATCTTGTGTTTTGGACGCAATAATATCTGGAAGCTCTAAATTTAACGCTAGAGATACCATAAAACATAATATCATGGTGAAATTTCATGGAGAATCCAATTTTCAAGGTTTCAAGTCCTCTACAGTAACCCTTACCCTCGAAATTTGCATCTTTTGGCACTTCCGACTTTTCTACAGTAACCCAAAACCCCTGAAAAGTCTCACCTGCAACGCCTGCTCCCTCTGTTGCTGCATAATCATTGCTAGCGCCTGTTGTTGTGCCAAATCGTTCACCTGCGCGGGTTGCATTCCAGCACTCGTCGCAATTTGCTGTAGAGTGGGCGTGGCTTGGGTTGCCGGCGCTGCTTGTTGGGCCGACGTGGCGA</canonical>
            <polymorphic>TGTTGTTGTTGAATCATCGCCAGAATTTGTTGACTTTGTTGGGCCTGGAAATTTTAGATTTGAACTTTCCGACTTTTGAAAATTTTTGGGCCAAAAATTGCCTCAGATTCGTTTTTCCCATGGGTTGTTTGGTATATTTGCAAAATTCCAGGGTTCTAGCTCAAAGTGGCGTAAAATACGGTGTTTGGTCTGCAAACACCGAGGTACAGTAATCCGGAGTACGAATGGAATTCCCGGGGGCGCAATTTTACGGGAAATTCGATTTTCCTAGTTTCATGAGCTCTACAGTTCTCCGAAACATAAAAAATCTAAACTGTCGTAAGGTTCAGTGTATTGGACGCAAACACCTGTGGAAGCCCTAAATTGAAAGCTAGAGACGCTCGGAAAAACGTTGTAGGGTAAAATTTTACGGAAAAATCGATTTTTATAGTTCCAAGGTCTAGCCAACGGCCTCTAAAAGTTCAACTGTCGTGAAATCAGGTGCATTGGACGCAAACACMTTTAGATGTCTTGGATTGAGATCTAGCGACTCCCAAAAGCATGATTTCAGTGTGAAATTTTATGGAGAATCCTATTTTCAAGGTTCAAGGCTGTCTACAGTAACCCTAAACCTTGAAAACCTAAATTGTCGTAAAATCTTGTGTTTTGGACGCAATAATATCTGGAAGCTCTAAATTTAACGCTAGAGATACCATAAAACATAATATCATGGTGAAATTTCATGGAGAATCCAATTTTCAAGGTTTCAAGTCCTCTACAGTAACCCTTACCCTCGAAATTTGCATCTTTTGGCACTTCCGACTTTTCTACAGTAACCCAAAACCCCTGAAAAGTCTCACCTGCAACGCCTGCTCCCTCTGTTGCTGCATAATCATTGCTAGCGCCTGTTGTTGTGCCAAATCGTTCACCTGCGCGGGTTGCATTCCAGCACTCGTCGCAATTTGCTGTAGAGTGGGCGTGGCTTGGGTTGCCGGCGCTGCTTGTTGGGCCGACGTGGCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCGTAAGGTTCAGTGTATTG</pcr_primer_p1>
		<pcr_primer_p2>ATTCTCCATAAAATTTCACACTG</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TGTCGTAAGGTTCAGTGTATTGGACGCAAACACCTGTGGAAGCCCTAAATTGAAAGCTAGAGACGCTCGGAAAAACGTTGTAGGGTAAAATTTTACGGAAAAATCGATTTTTATAGTTCCAAGGTCTAGCCAACGGCCTCTAAAAGTTCAACTGTCGTGAAATCAGGTGCATTGGACGCAAACACCTTTAGATGTCTTGGATTGAGATCTAGCGACTCCCAAAAGCATGATTTCAGTGTGAAATTTTATGGAGAAT</canonical_amplicon>
		<polymorphic_amplicon>TGTCGTAAGGTTCAGTGTATTGGACGCAAACACCTGTGGAAGCCCTAAATTGAAAGCTAGAGACGCTCGGAAAAACGTTGTAGGGTAAAATTTTACGGAAAAATCGATTTTTATAGTTCCAAGGTCTAGCCAACGGCCTCTAAAAGTTCAACTGTCGTGAAATCAGGTGCATTGGACGCAAACACMTTTAGATGTCTTGGATTGAGATCTAGCGACTCCCAAAAGCATGATTTCAGTGTGAAATTTTATGGAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38155</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>220922</contig_pos>
        <strand>+</strand>
        <context>TGAGATCTAG[C/T]GACTCCCAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGGTGCATTGGACGCAAACACCTTTAGATGTCTTGGATTGAGATCTAG</left_flank>
        <right_flank>GACTCCCAAAAGCATGATTTCAGTGTGAAATTTTATGGAGAATCCTATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTGACTTTGTTGGGCCTGGAAATTTTAGATTTGAACTTTCCGACTTTTGAAAATTTTTGGGCCAAAAATTGCCTCAGATTCGTTTTTCCCATGGGTTGTTTGGTATATTTGCAAAATTCCAGGGTTCTAGCTCAAAGTGGCGTAAAATACGGTGTTTGGTCTGCAAACACCGAGGTACAGTAATCCGGAGTACGAATGGAATTCCCGGGGGCGCAATTTTACGGGAAATTCGATTTTCCTAGTTTCATGAGCTCTACAGTTCTCCGAAACATAAAAAATCTAAACTGTCGTAAGGTTCAGTGTATTGGACGCAAACACCTGTGGAAGCCCTAAATTGAAAGCTAGAGACGCTCGGAAAAACGTTGTAGGGTAAAATTTTACGGAAAAATCGATTTTTATAGTTCCAAGGTCTAGCCAACGGCCTCTAAAAGTTCAACTGTCGTGAAATCAGGTGCATTGGACGCAAACACCTTTAGATGTCTTGGATTGAGATCTAGCGACTCCCAAAAGCATGATTTCAGTGTGAAATTTTATGGAGAATCCTATTTTCAAGGTTCAAGGCTGTCTACAGTAACCCTAAACCTTGAAAACCTAAATTGTCGTAAAATCTTGTGTTTTGGACGCAATAATATCTGGAAGCTCTAAATTTAACGCTAGAGATACCATAAAACATAATATCATGGTGAAATTTCATGGAGAATCCAATTTTCAAGGTTTCAAGTCCTCTACAGTAACCCTTACCCTCGAAATTTGCATCTTTTGGCACTTCCGACTTTTCTACAGTAACCCAAAACCCCTGAAAAGTCTCACCTGCAACGCCTGCTCCCTCTGTTGCTGCATAATCATTGCTAGCGCCTGTTGTTGTGCCAAATCGTTCACCTGCGCGGGTTGCATTCCAGCACTCGTCGCAATTTGCTGTAGAGTGGGCGTGGCTTGGGTTGCCGGCGCTGCTTGTTGGGCCGACGTGGCGATTCCAATCAGATTCCTTTGTTGTTGCT</canonical>
            <polymorphic>TGTTGACTTTGTTGGGCCTGGAAATTTTAGATTTGAACTTTCCGACTTTTGAAAATTTTTGGGCCAAAAATTGCCTCAGATTCGTTTTTCCCATGGGTTGTTTGGTATATTTGCAAAATTCCAGGGTTCTAGCTCAAAGTGGCGTAAAATACGGTGTTTGGTCTGCAAACACCGAGGTACAGTAATCCGGAGTACGAATGGAATTCCCGGGGGCGCAATTTTACGGGAAATTCGATTTTCCTAGTTTCATGAGCTCTACAGTTCTCCGAAACATAAAAAATCTAAACTGTCGTAAGGTTCAGTGTATTGGACGCAAACACCTGTGGAAGCCCTAAATTGAAAGCTAGAGACGCTCGGAAAAACGTTGTAGGGTAAAATTTTACGGAAAAATCGATTTTTATAGTTCCAAGGTCTAGCCAACGGCCTCTAAAAGTTCAACTGTCGTGAAATCAGGTGCATTGGACGCAAACACCTTTAGATGTCTTGGATTGAGATCTAGYGACTCCCAAAAGCATGATTTCAGTGTGAAATTTTATGGAGAATCCTATTTTCAAGGTTCAAGGCTGTCTACAGTAACCCTAAACCTTGAAAACCTAAATTGTCGTAAAATCTTGTGTTTTGGACGCAATAATATCTGGAAGCTCTAAATTTAACGCTAGAGATACCATAAAACATAATATCATGGTGAAATTTCATGGAGAATCCAATTTTCAAGGTTTCAAGTCCTCTACAGTAACCCTTACCCTCGAAATTTGCATCTTTTGGCACTTCCGACTTTTCTACAGTAACCCAAAACCCCTGAAAAGTCTCACCTGCAACGCCTGCTCCCTCTGTTGCTGCATAATCATTGCTAGCGCCTGTTGTTGTGCCAAATCGTTCACCTGCGCGGGTTGCATTCCAGCACTCGTCGCAATTTGCTGTAGAGTGGGCGTGGCTTGGGTTGCCGGCGCTGCTTGTTGGGCCGACGTGGCGATTCCAATCAGATTCCTTTGTTGTTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTCTAAAAGTTCAACTGTCGT</pcr_primer_p1>
		<pcr_primer_p2>CGTTAAATTTAGAGCTTCCAGATA</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>CCTCTAAAAGTTCAACTGTCGTGAAATCAGGTGCATTGGACGCAAACACCTTTAGATGTCTTGGATTGAGATCTAGCGACTCCCAAAAGCATGATTTCAGTGTGAAATTTTATGGAGAATCCTATTTTCAAGGTTCAAGGCTGTCTACAGTAACCCTAAACCTTGAAAACCTAAATTGTCGTAAAATCTTGTGTTTTGGACGCAATAATATCTGGAAGCTCTAAATTTAACG</canonical_amplicon>
		<polymorphic_amplicon>CCTCTAAAAGTTCAACTGTCGTGAAATCAGGTGCATTGGACGCAAACACCTTTAGATGTCTTGGATTGAGATCTAGYGACTCCCAAAAGCATGATTTCAGTGTGAAATTTTATGGAGAATCCTATTTTCAAGGTTCAAGGCTGTCTACAGTAACCCTAAACCTTGAAAACCTAAATTGTCGTAAAATCTTGTGTTTTGGACGCAATAATATCTGGAAGCTCTAAATTTAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38156</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>221123</contig_pos>
        <strand>+</strand>
        <context>TTTCATGGAG[A/T]ATCCAATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAACGCTAGAGATACCATAAAACATAATATCATGGTGAAATTTCATGGAG</left_flank>
        <right_flank>ATCCAATTTTCAAGGTTTCAAGTCCTCTACAGTAACCCTTACCCTCGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTCCCGGGGGCGCAATTTTACGGGAAATTCGATTTTCCTAGTTTCATGAGCTCTACAGTTCTCCGAAACATAAAAAATCTAAACTGTCGTAAGGTTCAGTGTATTGGACGCAAACACCTGTGGAAGCCCTAAATTGAAAGCTAGAGACGCTCGGAAAAACGTTGTAGGGTAAAATTTTACGGAAAAATCGATTTTTATAGTTCCAAGGTCTAGCCAACGGCCTCTAAAAGTTCAACTGTCGTGAAATCAGGTGCATTGGACGCAAACACCTTTAGATGTCTTGGATTGAGATCTAGCGACTCCCAAAAGCATGATTTCAGTGTGAAATTTTATGGAGAATCCTATTTTCAAGGTTCAAGGCTGTCTACAGTAACCCTAAACCTTGAAAACCTAAATTGTCGTAAAATCTTGTGTTTTGGACGCAATAATATCTGGAAGCTCTAAATTTAACGCTAGAGATACCATAAAACATAATATCATGGTGAAATTTCATGGAGAATCCAATTTTCAAGGTTTCAAGTCCTCTACAGTAACCCTTACCCTCGAAATTTGCATCTTTTGGCACTTCCGACTTTTCTACAGTAACCCAAAACCCCTGAAAAGTCTCACCTGCAACGCCTGCTCCCTCTGTTGCTGCATAATCATTGCTAGCGCCTGTTGTTGTGCCAAATCGTTCACCTGCGCGGGTTGCATTCCAGCACTCGTCGCAATTTGCTGTAGAGTGGGCGTGGCTTGGGTTGCCGGCGCTGCTTGTTGGGCCGACGTGGCGATTCCAATCAGATTCCTTTGTTGTTGCTGTTGGGCGGCCGAGATTTGGTTGGCTTGGGTTGTGTGGGCGGCGGACGGCGGACGGGCGATCGGCGGTTTTGGGGTGGCCCTGAAAATATCGATTTTTAGGGATTTTTAGGTCAATTTCAGCCATTTTCAGCTCATTTTCAGCCGTTTTTTTTCCGCATAGATATAGATTCACGACCAATCACACACGCACTCACAACACG</canonical>
            <polymorphic>AATTCCCGGGGGCGCAATTTTACGGGAAATTCGATTTTCCTAGTTTCATGAGCTCTACAGTTCTCCGAAACATAAAAAATCTAAACTGTCGTAAGGTTCAGTGTATTGGACGCAAACACCTGTGGAAGCCCTAAATTGAAAGCTAGAGACGCTCGGAAAAACGTTGTAGGGTAAAATTTTACGGAAAAATCGATTTTTATAGTTCCAAGGTCTAGCCAACGGCCTCTAAAAGTTCAACTGTCGTGAAATCAGGTGCATTGGACGCAAACACCTTTAGATGTCTTGGATTGAGATCTAGCGACTCCCAAAAGCATGATTTCAGTGTGAAATTTTATGGAGAATCCTATTTTCAAGGTTCAAGGCTGTCTACAGTAACCCTAAACCTTGAAAACCTAAATTGTCGTAAAATCTTGTGTTTTGGACGCAATAATATCTGGAAGCTCTAAATTTAACGCTAGAGATACCATAAAACATAATATCATGGTGAAATTTCATGGAGWATCCAATTTTCAAGGTTTCAAGTCCTCTACAGTAACCCTTACCCTCGAAATTTGCATCTTTTGGCACTTCCGACTTTTCTACAGTAACCCAAAACCCCTGAAAAGTCTCACCTGCAACGCCTGCTCCCTCTGTTGCTGCATAATCATTGCTAGCGCCTGTTGTTGTGCCAAATCGTTCACCTGCGCGGGTTGCATTCCAGCACTCGTCGCAATTTGCTGTAGAGTGGGCGTGGCTTGGGTTGCCGGCGCTGCTTGTTGGGCCGACGTGGCGATTCCAATCAGATTCCTTTGTTGTTGCTGTTGGGCGGCCGAGATTTGGTTGGCTTGGGTTGTGTGGGCGGCGGACGGCGGACGGGCGATCGGCGGTTTTGGGGTGGCCCTGAAAATATCGATTTTTAGGGATTTTTAGGTCAATTTCAGCCATTTTCAGCTCATTTTCAGCCGTTTTTTTTCCGCATAGATATAGATTCACGACCAATCACACACGCACTCACAACACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>300 272 184 160 39 34 11</canonical_bands>
                <polymorphic_bands>432 300 184 39 34 11</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>339 272 184 160 34 11</canonical_bands>
                <polymorphic_bands>432 339 184 34 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATCCTATTTTCAAGGTTCAAG</pcr_primer_p1>
		<pcr_primer_p2>TTACTGTAGAAAAGTCGGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAATCCTATTTTCAAGGTTCAAGGCTGTCTACAGTAACCCTAAACCTTGAAAACCTAAATTGTCGTAAAATCTTGTGTTTTGGACGCAATAATATCTGGAAGCTCTAAATTTAACGCTAGAGATACCATAAAACATAATATCATGGTGAAATTTCATGGAGAATCCAATTTTCAAGGTTTCAAGTCCTCTACAGTAACCCTTACCCTCGAAATTTGCATCTTTTGGCACTTCCGACTTTTCTACAGTAA</canonical_amplicon>
		<polymorphic_amplicon>GAATCCTATTTTCAAGGTTCAAGGCTGTCTACAGTAACCCTAAACCTTGAAAACCTAAATTGTCGTAAAATCTTGTGTTTTGGACGCAATAATATCTGGAAGCTCTAAATTTAACGCTAGAGATACCATAAAACATAATATCATGGTGAAATTTCATGGAGWATCCAATTTTCAAGGTTTCAAGTCCTCTACAGTAACCCTTACCCTCGAAATTTGCATCTTTTGGCACTTCCGACTTTTCTACAGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38157</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>221135</contig_pos>
        <strand>+</strand>
        <context>TCCAATTTTC[A/G]AGGTTTCAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACCATAAAACATAATATCATGGTGAAATTTCATGGAGAATCCAATTTTC</left_flank>
        <right_flank>AGGTTTCAAGTCCTCTACAGTAACCCTTACCCTCGAAATTTGCATCTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCAATTTTACGGGAAATTCGATTTTCCTAGTTTCATGAGCTCTACAGTTCTCCGAAACATAAAAAATCTAAACTGTCGTAAGGTTCAGTGTATTGGACGCAAACACCTGTGGAAGCCCTAAATTGAAAGCTAGAGACGCTCGGAAAAACGTTGTAGGGTAAAATTTTACGGAAAAATCGATTTTTATAGTTCCAAGGTCTAGCCAACGGCCTCTAAAAGTTCAACTGTCGTGAAATCAGGTGCATTGGACGCAAACACCTTTAGATGTCTTGGATTGAGATCTAGCGACTCCCAAAAGCATGATTTCAGTGTGAAATTTTATGGAGAATCCTATTTTCAAGGTTCAAGGCTGTCTACAGTAACCCTAAACCTTGAAAACCTAAATTGTCGTAAAATCTTGTGTTTTGGACGCAATAATATCTGGAAGCTCTAAATTTAACGCTAGAGATACCATAAAACATAATATCATGGTGAAATTTCATGGAGAATCCAATTTTCAAGGTTTCAAGTCCTCTACAGTAACCCTTACCCTCGAAATTTGCATCTTTTGGCACTTCCGACTTTTCTACAGTAACCCAAAACCCCTGAAAAGTCTCACCTGCAACGCCTGCTCCCTCTGTTGCTGCATAATCATTGCTAGCGCCTGTTGTTGTGCCAAATCGTTCACCTGCGCGGGTTGCATTCCAGCACTCGTCGCAATTTGCTGTAGAGTGGGCGTGGCTTGGGTTGCCGGCGCTGCTTGTTGGGCCGACGTGGCGATTCCAATCAGATTCCTTTGTTGTTGCTGTTGGGCGGCCGAGATTTGGTTGGCTTGGGTTGTGTGGGCGGCGGACGGCGGACGGGCGATCGGCGGTTTTGGGGTGGCCCTGAAAATATCGATTTTTAGGGATTTTTAGGTCAATTTCAGCCATTTTCAGCTCATTTTCAGCCGTTTTTTTTCCGCATAGATATAGATTCACGACCAATCACACACGCACTCACAACACGCTATTTATAGAT</canonical>
            <polymorphic>CGCAATTTTACGGGAAATTCGATTTTCCTAGTTTCATGAGCTCTACAGTTCTCCGAAACATAAAAAATCTAAACTGTCGTAAGGTTCAGTGTATTGGACGCAAACACCTGTGGAAGCCCTAAATTGAAAGCTAGAGACGCTCGGAAAAACGTTGTAGGGTAAAATTTTACGGAAAAATCGATTTTTATAGTTCCAAGGTCTAGCCAACGGCCTCTAAAAGTTCAACTGTCGTGAAATCAGGTGCATTGGACGCAAACACCTTTAGATGTCTTGGATTGAGATCTAGCGACTCCCAAAAGCATGATTTCAGTGTGAAATTTTATGGAGAATCCTATTTTCAAGGTTCAAGGCTGTCTACAGTAACCCTAAACCTTGAAAACCTAAATTGTCGTAAAATCTTGTGTTTTGGACGCAATAATATCTGGAAGCTCTAAATTTAACGCTAGAGATACCATAAAACATAATATCATGGTGAAATTTCATGGAGAATCCAATTTTCRAGGTTTCAAGTCCTCTACAGTAACCCTTACCCTCGAAATTTGCATCTTTTGGCACTTCCGACTTTTCTACAGTAACCCAAAACCCCTGAAAAGTCTCACCTGCAACGCCTGCTCCCTCTGTTGCTGCATAATCATTGCTAGCGCCTGTTGTTGTGCCAAATCGTTCACCTGCGCGGGTTGCATTCCAGCACTCGTCGCAATTTGCTGTAGAGTGGGCGTGGCTTGGGTTGCCGGCGCTGCTTGTTGGGCCGACGTGGCGATTCCAATCAGATTCCTTTGTTGTTGCTGTTGGGCGGCCGAGATTTGGTTGGCTTGGGTTGTGTGGGCGGCGGACGGCGGACGGGCGATCGGCGGTTTTGGGGTGGCCCTGAAAATATCGATTTTTAGGGATTTTTAGGTCAATTTCAGCCATTTTCAGCTCATTTTCAGCCGTTTTTTTTCCGCATAGATATAGATTCACGACCAATCACACACGCACTCACAACACGCTATTTATAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATCCTATTTTCAAGGTTCAAG</pcr_primer_p1>
		<pcr_primer_p2>TTACTGTAGAAAAGTCGGAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAATCCTATTTTCAAGGTTCAAGGCTGTCTACAGTAACCCTAAACCTTGAAAACCTAAATTGTCGTAAAATCTTGTGTTTTGGACGCAATAATATCTGGAAGCTCTAAATTTAACGCTAGAGATACCATAAAACATAATATCATGGTGAAATTTCATGGAGAATCCAATTTTCAAGGTTTCAAGTCCTCTACAGTAACCCTTACCCTCGAAATTTGCATCTTTTGGCACTTCCGACTTTTCTACAGTAA</canonical_amplicon>
		<polymorphic_amplicon>GAATCCTATTTTCAAGGTTCAAGGCTGTCTACAGTAACCCTAAACCTTGAAAACCTAAATTGTCGTAAAATCTTGTGTTTTGGACGCAATAATATCTGGAAGCTCTAAATTTAACGCTAGAGATACCATAAAACATAATATCATGGTGAAATTTCATGGAGAATCCAATTTTCRAGGTTTCAAGTCCTCTACAGTAACCCTTACCCTCGAAATTTGCATCTTTTGGCACTTCCGACTTTTCTACAGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38158</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>221846</contig_pos>
        <strand>+</strand>
        <context>AGATTTCTCA[A/G]TTTTTTTTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGTGTGAATTGACTGCAAAATTGAAAAACTAGAAAACTAGATTTCTCA</left_flank>
        <right_flank>TTTTTTTTGGGGATTTTTGAAGGGGAATATGGGGAGAAAAGAGAAGTGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGGCGTGGCTTGGGTTGCCGGCGCTGCTTGTTGGGCCGACGTGGCGATTCCAATCAGATTCCTTTGTTGTTGCTGTTGGGCGGCCGAGATTTGGTTGGCTTGGGTTGTGTGGGCGGCGGACGGCGGACGGGCGATCGGCGGTTTTGGGGTGGCCCTGAAAATATCGATTTTTAGGGATTTTTAGGTCAATTTCAGCCATTTTCAGCTCATTTTCAGCCGTTTTTTTTCCGCATAGATATAGATTCACGACCAATCACACACGCACTCACAACACGCTATTTATAGATAGAGGGGGATAAAGAGAGAGAGAGAGAGTGAGAGAGAGAGAGAGAGATCTACAGTAGTTGGAAACTCACGCAACACGTCGCGCTGCCTCAGTTATAGTGGCTGCCATCAGCTGTGGATTTCCAGCATAAGACGGACCACCCGACAATTGTGGTGGCGGGAATTGTGTGAATTGACTGCAAAATTGAAAAACTAGAAAACTAGATTTCTCATTTTTTTTTGGGGATTTTTGAAGGGGAATATGGGGAGAAAAGAGAAGTGGGGAGAAAAATTTGAACTAAAAATTCATATTTCTCATGCTCGAAAACCCCGAAAATTCAATTTTCCGCAAATTGTCGTCAAATCTGACGTTTGGTCCGCAAACACCAAGGTACAGTAATCCGGGATGAAAACTGAATCATGGGGGTCAAATCGCATTTTTAAGTCTTCTACAGTAATCCTGAACCTCAAAAATCTCAATTGTCGTCATATTCAGTGTTTTGGACGCAAACACCTCTAGAAGCTCTAAATTGAGCGCTAGAGACTCCTTAAAACATGACTTCAGGGTCAAATTTCATGGTAAATCCGGTTCCAAGCTCAAAACTCTAAAAAACCCGCTCAAAATGAGACAAAATAAGAATTGTCGTAAAATATAATGTTTAGGGTCCGCAAACACCAAAGCAACGCTAGAATGCCCGTAAAACCGTTCCCTAGTCTGAAATTTCATGAGAAGC</canonical>
            <polymorphic>GTGGGCGTGGCTTGGGTTGCCGGCGCTGCTTGTTGGGCCGACGTGGCGATTCCAATCAGATTCCTTTGTTGTTGCTGTTGGGCGGCCGAGATTTGGTTGGCTTGGGTTGTGTGGGCGGCGGACGGCGGACGGGCGATCGGCGGTTTTGGGGTGGCCCTGAAAATATCGATTTTTAGGGATTTTTAGGTCAATTTCAGCCATTTTCAGCTCATTTTCAGCCGTTTTTTTTCCGCATAGATATAGATTCACGACCAATCACACACGCACTCACAACACGCTATTTATAGATAGAGGGGGATAAAGAGAGAGAGAGAGAGTGAGAGAGAGAGAGAGAGATCTACAGTAGTTGGAAACTCACGCAACACGTCGCGCTGCCTCAGTTATAGTGGCTGCCATCAGCTGTGGATTTCCAGCATAAGACGGACCACCCGACAATTGTGGTGGCGGGAATTGTGTGAATTGACTGCAAAATTGAAAAACTAGAAAACTAGATTTCTCARTTTTTTTTGGGGATTTTTGAAGGGGAATATGGGGAGAAAAGAGAAGTGGGGAGAAAAATTTGAACTAAAAATTCATATTTCTCATGCTCGAAAACCCCGAAAATTCAATTTTCCGCAAATTGTCGTCAAATCTGACGTTTGGTCCGCAAACACCAAGGTACAGTAATCCGGGATGAAAACTGAATCATGGGGGTCAAATCGCATTTTTAAGTCTTCTACAGTAATCCTGAACCTCAAAAATCTCAATTGTCGTCATATTCAGTGTTTTGGACGCAAACACCTCTAGAAGCTCTAAATTGAGCGCTAGAGACTCCTTAAAACATGACTTCAGGGTCAAATTTCATGGTAAATCCGGTTCCAAGCTCAAAACTCTAAAAAACCCGCTCAAAATGAGACAAAATAAGAATTGTCGTAAAATATAATGTTTAGGGTCCGCAAACACCAAAGCAACGCTAGAATGCCCGTAAAACCGTTCCCTAGTCTGAAATTTCATGAGAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTATAGTGGCTGCCATCAG</pcr_primer_p1>
		<pcr_primer_p2>TCTCCCCACTTCTCTTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>175</pcr_amplicon_size>
		<canonical_amplicon>GTTATAGTGGCTGCCATCAGCTGTGGATTTCCAGCATAAGACGGACCACCCGACAATTGTGGTGGCGGGAATTGTGTGAATTGACTGCAAAATTGAAAAACTAGAAAACTAGATTTCTCATTTTTTTTTGGGGATTTTTGAAGGGGAATATGGGGAGAAAAGAGAAGTGGGGAGA</canonical_amplicon>
		<polymorphic_amplicon>GTTATAGTGGCTGCCATCAGCTGTGGATTTCCAGCATAAGACGGACCACCCGACAATTGTGGTGGCGGGAATTGTGTGAATTGACTGCAAAATTGAAAAACTAGAAAACTAGATTTCTCARTTTTTTTTGGGGATTTTTGAAGGGGAATATGGGGAGAAAAGAGAAGTGGGGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38159</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>242574</contig_pos>
        <strand></strand>
        <context>GCAAATTTCC[A/G]GCAAATTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTTGAGCTTAAAAATTGGATTTACGGGCTCGAAAATTGCAAATTTCC</left_flank>
        <right_flank>GCAAATTTCTGAGCTTTTTAGGCCTGAATTTGGCGTTTTTGAGACTTAAA</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGATTTTGGGGACCAAAAATAACATATTTCTCTAGGCTTCCAAATAGGGGGGTTTCAATTCAAAAATGGGTGCATTTCTAGAGCCGAATAGTGGTATTTTCAGGTCCGGAAATTGCAAACTTTCGGCTCAAAATTTGGCATTTCTATTGCCAAAAAATGAGATTTTTCGGTCTGAATTTGACCTTTTTAGGCTCCAAAATTGAAATTTTTCGAACCAAATTTGACAATTTCCGACTCAAAATTCCGTATTTTAAGGCCCGAATTTGAGATTTTTAAGGACGAAAGTTGGTATTTTTTAGGTCTGAAACTGACATTTCTTTACCCGAATTTGTGACAATTTCAGGTTCAAAAATGGACAATTCTAGAGCCAAAAATTGGTAGTTTTGGGCTCAAAAAAGACGATTCCAGAGTCAAAAATCGGCTGCTTTTTCGGGGTCGGAATTTGACCATTTTTGAGCTTAAAAATTGGATTTACGGGCTCGAAAATTGCAAATTTCCAGCAAATTTCTGAGCTTTTTAGGCCTGAATTTGGCGTTTTTGAGACTTAAAATTGCGATTTTTCAGCCGTAAAATGAGCTTTCTGGACTTCAAATTAGGCAAAAAATTGACATTTTCAGACCATAGATTTCAAGATCTTTAGAGCCAACAATGACATTTTTAGGATCAAAAAAGGGATTTTCCGACACATTTCCAGCTGATTTCCACAGCCAATTTATGCGCTCACCATCATATCAACAGCCTTATCAACCTTCTCCCTCTGAATTTCGATGGCTTTCAATCGACAACTCTCGATTGTGATCTGCTGTAGACTCTGGATCAATTCGATTTTCCGATCAATCGATATTTGATATTTGATCTCGGCTTCCTCGAAATGAACGTAGGTACGCAGAAGACGTTCGTATTCTGTCTCCTGGAACATCTCCTCGATTTTCAGACCCCATGCAAGGGCGCGGCGGAAGTGATTGGGTCTGTGCGGAAATTGTAGTTTGAAGAGATTAC</canonical>
            <polymorphic>GAGATTTTGGGGACCAAAAATAACATATTTCTCTAGGCTTCCAAATAGGGGGGTTTCAATTCAAAAATGGGTGCATTTCTAGAGCCGAATAGTGGTATTTTCAGGTCCGGAAATTGCAAACTTTCGGCTCAAAATTTGGCATTTCTATTGCCAAAAAATGAGATTTTTCGGTCTGAATTTGACCTTTTTAGGCTCCAAAATTGAAATTTTTCGAACCAAATTTGACAATTTCCGACTCAAAATTCCGTATTTTAAGGCCCGAATTTGAGATTTTTAAGGACGAAAGTTGGTATTTTTTAGGTCTGAAACTGACATTTCTTTACCCGAATTTGTGACAATTTCAGGTTCAAAAATGGACAATTCTAGAGCCAAAAATTGGTAGTTTTGGGCTCAAAAAAGACGATTCCAGAGTCAAAAATCGGCTGCTTTTTCGGGGTCGGAATTTGACCATTTTTGAGCTTAAAAATTGGATTTACGGGCTCGAAAATTGCAAATTTCCRGCAAATTTCTGAGCTTTTTAGGCCTGAATTTGGCGTTTTTGAGACTTAAAATTGCGATTTTTCAGCCGTAAAATGAGCTTTCTGGACTTCAAATTAGGCAAAAAATTGACATTTTCAGACCATAGATTTCAAGATCTTTAGAGCCAACAATGACATTTTTAGGATCAAAAAAGGGATTTTCCGACACATTTCCAGCTGATTTCCACAGCCAATTTATGCGCTCACCATCATATCAACAGCCTTATCAACCTTCTCCCTCTGAATTTCGATGGCTTTCAATCGACAACTCTCGATTGTGATCTGCTGTAGACTCTGGATCAATTCGATTTTCCGATCAATCGATATTTGATATTTGATCTCGGCTTCCTCGAAATGAACGTAGGTACGCAGAAGACGTTCGTATTCTGTCTCCTGGAACATCTCCTCGATTTTCAGACCCCATGCAAGGGCGCGGCGGAAGTGATTGGGTCTGTGCGGAAATTGTAGTTTGAAGAGATTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACATTTCTTTACCCGAATTT</pcr_primer_p1>
		<pcr_primer_p2>AAATCGCAATTTTAAGTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACATTTCTTTACCCGAATTTGTGACAATTTCAGGTTCAAAAATGGACAATTCTAGAGCCAAAAATTGGTAGTTTTGGGCTCAAAAAAGACGATTCCAGAGTCAAAAATCGGCTGCTTTTTCGGGGTCGGAATTTGACCATTTTTGAGCTTAAAAATTGGATTTACGGGCTCGAAAATTGCAAATTTCCAGCAAATTTCTGAGCTTTTTAGGCCTGAATTTGGCGTTTTTGAGACTTAAAATTGCGATTT</canonical_amplicon>
		<polymorphic_amplicon>GACATTTCTTTACCCGAATTTGTGACAATTTCAGGTTCAAAAATGGACAATTCTAGAGCCAAAAATTGGTAGTTTTGGGCTCAAAAAAGACGATTCCAGAGTCAAAAATCGGCTGCTTTTTCGGGGTCGGAATTTGACCATTTTTGAGCTTAAAAATTGGATTTACGGGCTCGAAAATTGCAAATTTCCRGCAAATTTCTGAGCTTTTTAGGCCTGAATTTGGCGTTTTTGAGACTTAAAATTGCGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38160</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>243103</contig_pos>
        <strand></strand>
        <context>AAATTTTCTG[G/A]ATTACTGTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATTGTAGTTTGAAGAGATTACTGTAGTTTTGAAGTTTCGAAATTTTCTG</left_flank>
        <right_flank>ATTACTGTAGTCAGGGATTACTGTAGATTTCCGAGCTTGAAATTAGTTCA</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGCGTTTTTGAGACTTAAAATTGCGATTTTTCAGCCGTAAAATGAGCTTTCTGGACTTCAAATTAGGCAAAAAATTGACATTTTCAGACCATAGATTTCAAGATCTTTAGAGCCAACAATGACATTTTTAGGATCAAAAAAGGGATTTTCCGACACATTTCCAGCTGATTTCCACAGCCAATTTATGCGCTCACCATCATATCAACAGCCTTATCAACCTTCTCCCTCTGAATTTCGATGGCTTTCAATCGACAACTCTCGATTGTGATCTGCTGTAGACTCTGGATCAATTCGATTTTCCGATCAATCGATATTTGATATTTGATCTCGGCTTCCTCGAAATGAACGTAGGTACGCAGAAGACGTTCGTATTCTGTCTCCTGGAACATCTCCTCGATTTTCAGACCCCATGCAAGGGCGCGGCGGAAGTGATTGGGTCTGTGCGGAAATTGTAGTTTGAAGAGATTACTGTAGTTTTGAAGTTTCGAAATTTTCTGGATTACTGTAGTCAGGGATTACTGTAGATTTCCGAGCTTGAAATTAGTTCAAAGGATTACTGTCATTTCAGATATTGAGCTTTTTGGATTTCATGATTACTGTAGATTACTGTAGTTTTGTGATTTTCAATTTTCAACGAATTTTGAACCACGAGATTACTGTAGATTTGGAAAATTGAGATTCCTGGATTACTGTAGTTTTCAAAATTTCCAGATTTTTGGATTTCATGATTACCGTATTTTCTTTGTATTTTTCAATTTCGAAGATTACTGTAGTTTAGGATTACTAAAAGGTTTGAATTTTTGAAATTTTTTCATTCCAGGATTACTGTACTTTTGAAATTTTTCAATTTTCTGGATTACTGTAGTTTTCAATTCTGAAGATTCCTATACTTTGGAGACTACTGTAGATTCTCGGACTTGAAAATTCTCAAAAAAAATTTCGAAATTACTGTAACCCACATTACTGTAGATTACTGTAGTTTTCAAACTTGAAAATTT</canonical>
            <polymorphic>TTGGCGTTTTTGAGACTTAAAATTGCGATTTTTCAGCCGTAAAATGAGCTTTCTGGACTTCAAATTAGGCAAAAAATTGACATTTTCAGACCATAGATTTCAAGATCTTTAGAGCCAACAATGACATTTTTAGGATCAAAAAAGGGATTTTCCGACACATTTCCAGCTGATTTCCACAGCCAATTTATGCGCTCACCATCATATCAACAGCCTTATCAACCTTCTCCCTCTGAATTTCGATGGCTTTCAATCGACAACTCTCGATTGTGATCTGCTGTAGACTCTGGATCAATTCGATTTTCCGATCAATCGATATTTGATATTTGATCTCGGCTTCCTCGAAATGAACGTAGGTACGCAGAAGACGTTCGTATTCTGTCTCCTGGAACATCTCCTCGATTTTCAGACCCCATGCAAGGGCGCGGCGGAAGTGATTGGGTCTGTGCGGAAATTGTAGTTTGAAGAGATTACTGTAGTTTTGAAGTTTCGAAATTTTCTGRATTACTGTAGTCAGGGATTACTGTAGATTTCCGAGCTTGAAATTAGTTCAAAGGATTACTGTCATTTCAGATATTGAGCTTTTTGGATTTCATGATTACTGTAGATTACTGTAGTTTTGTGATTTTCAATTTTCAACGAATTTTGAACCACGAGATTACTGTAGATTTGGAAAATTGAGATTCCTGGATTACTGTAGTTTTCAAAATTTCCAGATTTTTGGATTTCATGATTACCGTATTTTCTTTGTATTTTTCAATTTCGAAGATTACTGTAGTTTAGGATTACTAAAAGGTTTGAATTTTTGAAATTTTTTCATTCCAGGATTACTGTACTTTTGAAATTTTTCAATTTTCTGGATTACTGTAGTTTTCAATTCTGAAGATTCCTATACTTTGGAGACTACTGTAGATTCTCGGACTTGAAAATTCTCAAAAAAAATTTCGAAATTACTGTAACCCACATTACTGTAGATTACTGTAGTTTTCAAACTTGAAAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>213 159 146 128 119 94 53 48 24 16</canonical_bands>
                <polymorphic_bands>307 159 146 128 119 53 48 24 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAACGTAGGTACGCAGAA</pcr_primer_p1>
		<pcr_primer_p2>GAAATCCAAAAAGCTCAATATCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATGAACGTAGGTACGCAGAAGACGTTCGTATTCTGTCTCCTGGAACATCTCCTCGATTTTCAGACCCCATGCAAGGGCGCGGCGGAAGTGATTGGGTCTGTGCGGAAATTGTAGTTTGAAGAGATTACTGTAGTTTTGAAGTTTCGAAATTTTCTGGATTACTGTAGTCAGGGATTACTGTAGATTTCCGAGCTTGAAATTAGTTCAAAGGATTACTGTCATTTCAGATATTGAGCTTTTTGGATTTC</canonical_amplicon>
		<polymorphic_amplicon>ATGAACGTAGGTACGCAGAAGACGTTCGTATTCTGTCTCCTGGAACATCTCCTCGATTTTCAGACCCCATGCAAGGGCGCGGCGGAAGTGATTGGGTCTGTGCGGAAATTGTAGTTTGAAGAGATTACTGTAGTTTTGAAGTTTCGAAATTTTCTGRATTACTGTAGTCAGGGATTACTGTAGATTTCCGAGCTTGAAATTAGTTCAAAGGATTACTGTCATTTCAGATATTGAGCTTTTTGGATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38161</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>243170</contig_pos>
        <strand></strand>
        <context>TACTGTCATT[T/G]CAGATATTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATTACTGTAGATTTCCGAGCTTGAAATTAGTTCAAAGGATTACTGTCATT</left_flank>
        <right_flank>CAGATATTGAGCTTTTTGGATTTCATGATTACTGTAGATTACTGTAGTTT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCAAAAAATTGACATTTTCAGACCATAGATTTCAAGATCTTTAGAGCCAACAATGACATTTTTAGGATCAAAAAAGGGATTTTCCGACACATTTCCAGCTGATTTCCACAGCCAATTTATGCGCTCACCATCATATCAACAGCCTTATCAACCTTCTCCCTCTGAATTTCGATGGCTTTCAATCGACAACTCTCGATTGTGATCTGCTGTAGACTCTGGATCAATTCGATTTTCCGATCAATCGATATTTGATATTTGATCTCGGCTTCCTCGAAATGAACGTAGGTACGCAGAAGACGTTCGTATTCTGTCTCCTGGAACATCTCCTCGATTTTCAGACCCCATGCAAGGGCGCGGCGGAAGTGATTGGGTCTGTGCGGAAATTGTAGTTTGAAGAGATTACTGTAGTTTTGAAGTTTCGAAATTTTCTGGATTACTGTAGTCAGGGATTACTGTAGATTTCCGAGCTTGAAATTAGTTCAAAGGATTACTGTCATTTCAGATATTGAGCTTTTTGGATTTCATGATTACTGTAGATTACTGTAGTTTTGTGATTTTCAATTTTCAACGAATTTTGAACCACGAGATTACTGTAGATTTGGAAAATTGAGATTCCTGGATTACTGTAGTTTTCAAAATTTCCAGATTTTTGGATTTCATGATTACCGTATTTTCTTTGTATTTTTCAATTTCGAAGATTACTGTAGTTTAGGATTACTAAAAGGTTTGAATTTTTGAAATTTTTTCATTCCAGGATTACTGTACTTTTGAAATTTTTCAATTTTCTGGATTACTGTAGTTTTCAATTCTGAAGATTCCTATACTTTGGAGACTACTGTAGATTCTCGGACTTGAAAATTCTCAAAAAAAATTTCGAAATTACTGTAACCCACATTACTGTAGATTACTGTAGTTTTCAAACTTGAAAATTTCGAGCTTACTGTAACTACAGTAAGCCCAGAATTTCTCAACTACAGTGATCCAAATGTGCTCTTTTCA</canonical>
            <polymorphic>GGCAAAAAATTGACATTTTCAGACCATAGATTTCAAGATCTTTAGAGCCAACAATGACATTTTTAGGATCAAAAAAGGGATTTTCCGACACATTTCCAGCTGATTTCCACAGCCAATTTATGCGCTCACCATCATATCAACAGCCTTATCAACCTTCTCCCTCTGAATTTCGATGGCTTTCAATCGACAACTCTCGATTGTGATCTGCTGTAGACTCTGGATCAATTCGATTTTCCGATCAATCGATATTTGATATTTGATCTCGGCTTCCTCGAAATGAACGTAGGTACGCAGAAGACGTTCGTATTCTGTCTCCTGGAACATCTCCTCGATTTTCAGACCCCATGCAAGGGCGCGGCGGAAGTGATTGGGTCTGTGCGGAAATTGTAGTTTGAAGAGATTACTGTAGTTTTGAAGTTTCGAAATTTTCTGGATTACTGTAGTCAGGGATTACTGTAGATTTCCGAGCTTGAAATTAGTTCAAAGGATTACTGTCATTKCAGATATTGAGCTTTTTGGATTTCATGATTACTGTAGATTACTGTAGTTTTGTGATTTTCAATTTTCAACGAATTTTGAACCACGAGATTACTGTAGATTTGGAAAATTGAGATTCCTGGATTACTGTAGTTTTCAAAATTTCCAGATTTTTGGATTTCATGATTACCGTATTTTCTTTGTATTTTTCAATTTCGAAGATTACTGTAGTTTAGGATTACTAAAAGGTTTGAATTTTTGAAATTTTTTCATTCCAGGATTACTGTACTTTTGAAATTTTTCAATTTTCTGGATTACTGTAGTTTTCAATTCTGAAGATTCCTATACTTTGGAGACTACTGTAGATTCTCGGACTTGAAAATTCTCAAAAAAAATTTCGAAATTACTGTAACCCACATTACTGTAGATTACTGTAGTTTTCAAACTTGAAAATTTCGAGCTTACTGTAACTACAGTAAGCCCAGAATTTCTCAACTACAGTGATCCAAATGTGCTCTTTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>309 151 127 102 78 72 65 38 37 21</canonical_bands>
                <polymorphic_bands>346 151 127 102 78 72 65 38 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGTCAGGGATTACTGTAGATTTC</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCTGGGCTTACTGTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>529</pcr_amplicon_size>
		<canonical_amplicon>GTAGTCAGGGATTACTGTAGATTTCCGAGCTTGAAATTAGTTCAAAGGATTACTGTCATTTCAGATATTGAGCTTTTTGGATTTCATGATTACTGTAGATTACTGTAGTTTTGTGATTTTCAATTTTCAACGAATTTTGAACCACGAGATTACTGTAGATTTGGAAAATTGAGATTCCTGGATTACTGTAGTTTTCAAAATTTCCAGATTTTTGGATTTCATGATTACCGTATTTTCTTTGTATTTTTCAATTTCGAAGATTACTGTAGTTTAGGATTACTAAAAGGTTTGAATTTTTGAAATTTTTTCATTCCAGGATTACTGTACTTTTGAAATTTTTCAATTTTCTGGATTACTGTAGTTTTCAATTCTGAAGATTCCTATACTTTGGAGACTACTGTAGATTCTCGGACTTGAAAATTCTCAAAAAAAATTTCGAAATTACTGTAACCCACATTACTGTAGATTACTGTAGTTTTCAAACTTGAAAATTTCGAGCTTACTGTAACTACAGTAAGCCCAGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>GTAGTCAGGGATTACTGTAGATTTCCGAGCTTGAAATTAGTTCAAAGGATTACTGTCATTKCAGATATTGAGCTTTTTGGATTTCATGATTACTGTAGATTACTGTAGTTTTGTGATTTTCAATTTTCAACGAATTTTGAACCACGAGATTACTGTAGATTTGGAAAATTGAGATTCCTGGATTACTGTAGTTTTCAAAATTTCCAGATTTTTGGATTTCATGATTACCGTATTTTCTTTGTATTTTTCAATTTCGAAGATTACTGTAGTTTAGGATTACTAAAAGGTTTGAATTTTTGAAATTTTTTCATTCCAGGATTACTGTACTTTTGAAATTTTTCAATTTTCTGGATTACTGTAGTTTTCAATTCTGAAGATTCCTATACTTTGGAGACTACTGTAGATTCTCGGACTTGAAAATTCTCAAAAAAAATTTCGAAATTACTGTAACCCACATTACTGTAGATTACTGTAGTTTTCAAACTTGAAAATTTCGAGCTTACTGTAACTACAGTAAGCCCAGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38162</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>243196</contig_pos>
        <strand></strand>
        <context>TTGGATTTCA[T/G]GATTACTGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTAGTTCAAAGGATTACTGTCATTTCAGATATTGAGCTTTTTGGATTTCA</left_flank>
        <right_flank>GATTACTGTAGATTACTGTAGTTTTGTGATTTTCAATTTTCAACGAATTT</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGATTTCAAGATCTTTAGAGCCAACAATGACATTTTTAGGATCAAAAAAGGGATTTTCCGACACATTTCCAGCTGATTTCCACAGCCAATTTATGCGCTCACCATCATATCAACAGCCTTATCAACCTTCTCCCTCTGAATTTCGATGGCTTTCAATCGACAACTCTCGATTGTGATCTGCTGTAGACTCTGGATCAATTCGATTTTCCGATCAATCGATATTTGATATTTGATCTCGGCTTCCTCGAAATGAACGTAGGTACGCAGAAGACGTTCGTATTCTGTCTCCTGGAACATCTCCTCGATTTTCAGACCCCATGCAAGGGCGCGGCGGAAGTGATTGGGTCTGTGCGGAAATTGTAGTTTGAAGAGATTACTGTAGTTTTGAAGTTTCGAAATTTTCTGGATTACTGTAGTCAGGGATTACTGTAGATTTCCGAGCTTGAAATTAGTTCAAAGGATTACTGTCATTTCAGATATTGAGCTTTTTGGATTTCATGATTACTGTAGATTACTGTAGTTTTGTGATTTTCAATTTTCAACGAATTTTGAACCACGAGATTACTGTAGATTTGGAAAATTGAGATTCCTGGATTACTGTAGTTTTCAAAATTTCCAGATTTTTGGATTTCATGATTACCGTATTTTCTTTGTATTTTTCAATTTCGAAGATTACTGTAGTTTAGGATTACTAAAAGGTTTGAATTTTTGAAATTTTTTCATTCCAGGATTACTGTACTTTTGAAATTTTTCAATTTTCTGGATTACTGTAGTTTTCAATTCTGAAGATTCCTATACTTTGGAGACTACTGTAGATTCTCGGACTTGAAAATTCTCAAAAAAAATTTCGAAATTACTGTAACCCACATTACTGTAGATTACTGTAGTTTTCAAACTTGAAAATTTCGAGCTTACTGTAACTACAGTAAGCCCAGAATTTCTCAACTACAGTGATCCAAATGTGCTCTTTTCAATTCTACAGTAATCCTCACTAATTTA</canonical>
            <polymorphic>TAGATTTCAAGATCTTTAGAGCCAACAATGACATTTTTAGGATCAAAAAAGGGATTTTCCGACACATTTCCAGCTGATTTCCACAGCCAATTTATGCGCTCACCATCATATCAACAGCCTTATCAACCTTCTCCCTCTGAATTTCGATGGCTTTCAATCGACAACTCTCGATTGTGATCTGCTGTAGACTCTGGATCAATTCGATTTTCCGATCAATCGATATTTGATATTTGATCTCGGCTTCCTCGAAATGAACGTAGGTACGCAGAAGACGTTCGTATTCTGTCTCCTGGAACATCTCCTCGATTTTCAGACCCCATGCAAGGGCGCGGCGGAAGTGATTGGGTCTGTGCGGAAATTGTAGTTTGAAGAGATTACTGTAGTTTTGAAGTTTCGAAATTTTCTGGATTACTGTAGTCAGGGATTACTGTAGATTTCCGAGCTTGAAATTAGTTCAAAGGATTACTGTCATTTCAGATATTGAGCTTTTTGGATTTCAKGATTACTGTAGATTACTGTAGTTTTGTGATTTTCAATTTTCAACGAATTTTGAACCACGAGATTACTGTAGATTTGGAAAATTGAGATTCCTGGATTACTGTAGTTTTCAAAATTTCCAGATTTTTGGATTTCATGATTACCGTATTTTCTTTGTATTTTTCAATTTCGAAGATTACTGTAGTTTAGGATTACTAAAAGGTTTGAATTTTTGAAATTTTTTCATTCCAGGATTACTGTACTTTTGAAATTTTTCAATTTTCTGGATTACTGTAGTTTTCAATTCTGAAGATTCCTATACTTTGGAGACTACTGTAGATTCTCGGACTTGAAAATTCTCAAAAAAAATTTCGAAATTACTGTAACCCACATTACTGTAGATTACTGTAGTTTTCAAACTTGAAAATTTCGAGCTTACTGTAACTACAGTAAGCCCAGAATTTCTCAACTACAGTGATCCAAATGTGCTCTTTTCAATTCTACAGTAATCCTCACTAATTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>497 368 135</canonical_bands>
                <polymorphic_bands>632 368</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>367 318 180 135</canonical_bands>
                <polymorphic_bands>367 318 315</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAATTAGTTCAAAGGATTACTG</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCTGGGCTTACTGTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>498</pcr_amplicon_size>
		<canonical_amplicon>TGAAATTAGTTCAAAGGATTACTGTCATTTCAGATATTGAGCTTTTTGGATTTCATGATTACTGTAGATTACTGTAGTTTTGTGATTTTCAATTTTCAACGAATTTTGAACCACGAGATTACTGTAGATTTGGAAAATTGAGATTCCTGGATTACTGTAGTTTTCAAAATTTCCAGATTTTTGGATTTCATGATTACCGTATTTTCTTTGTATTTTTCAATTTCGAAGATTACTGTAGTTTAGGATTACTAAAAGGTTTGAATTTTTGAAATTTTTTCATTCCAGGATTACTGTACTTTTGAAATTTTTCAATTTTCTGGATTACTGTAGTTTTCAATTCTGAAGATTCCTATACTTTGGAGACTACTGTAGATTCTCGGACTTGAAAATTCTCAAAAAAAATTTCGAAATTACTGTAACCCACATTACTGTAGATTACTGTAGTTTTCAAACTTGAAAATTTCGAGCTTACTGTAACTACAGTAAGCCCAGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>TGAAATTAGTTCAAAGGATTACTGTCATTTCAGATATTGAGCTTTTTGGATTTCAKGATTACTGTAGATTACTGTAGTTTTGTGATTTTCAATTTTCAACGAATTTTGAACCACGAGATTACTGTAGATTTGGAAAATTGAGATTCCTGGATTACTGTAGTTTTCAAAATTTCCAGATTTTTGGATTTCATGATTACCGTATTTTCTTTGTATTTTTCAATTTCGAAGATTACTGTAGTTTAGGATTACTAAAAGGTTTGAATTTTTGAAATTTTTTCATTCCAGGATTACTGTACTTTTGAAATTTTTCAATTTTCTGGATTACTGTAGTTTTCAATTCTGAAGATTCCTATACTTTGGAGACTACTGTAGATTCTCGGACTTGAAAATTCTCAAAAAAAATTTCGAAATTACTGTAACCCACATTACTGTAGATTACTGTAGTTTTCAAACTTGAAAATTTCGAGCTTACTGTAACTACAGTAAGCCCAGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38163</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>243223</contig_pos>
        <strand></strand>
        <context>tgtagttttg[T/G]gattttcaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GATATTGAGCTTTTTGGATTTCATGATTACTGTAGATTACTGTAGTTTTG</left_flank>
        <right_flank>GATTTTCAATTTTCAACGAATTTTGAACCACGAGATTACTGTAGATTTGG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGACATTTTTAGGATCAAAAAAGGGATTTTCCGACACATTTCCAGCTGATTTCCACAGCCAATTTATGCGCTCACCATCATATCAACAGCCTTATCAACCTTCTCCCTCTGAATTTCGATGGCTTTCAATCGACAACTCTCGATTGTGATCTGCTGTAGACTCTGGATCAATTCGATTTTCCGATCAATCGATATTTGATATTTGATCTCGGCTTCCTCGAAATGAACGTAGGTACGCAGAAGACGTTCGTATTCTGTCTCCTGGAACATCTCCTCGATTTTCAGACCCCATGCAAGGGCGCGGCGGAAGTGATTGGGTCTGTGCGGAAATTGTAGTTTGAAGAGATTACTGTAGTTTTGAAGTTTCGAAATTTTCTGGATTACTGTAGTCAGGGATTACTGTAGATTTCCGAGCTTGAAATTAGTTCAAAGGATTACTGTCATTTCAGATATTGAGCTTTTTGGATTTCATGATTACTGTAGATTACTGTAGTTTTGTGATTTTCAATTTTCAACGAATTTTGAACCACGAGATTACTGTAGATTTGGAAAATTGAGATTCCTGGATTACTGTAGTTTTCAAAATTTCCAGATTTTTGGATTTCATGATTACCGTATTTTCTTTGTATTTTTCAATTTCGAAGATTACTGTAGTTTAGGATTACTAAAAGGTTTGAATTTTTGAAATTTTTTCATTCCAGGATTACTGTACTTTTGAAATTTTTCAATTTTCTGGATTACTGTAGTTTTCAATTCTGAAGATTCCTATACTTTGGAGACTACTGTAGATTCTCGGACTTGAAAATTCTCAAAAAAAATTTCGAAATTACTGTAACCCACATTACTGTAGATTACTGTAGTTTTCAAACTTGAAAATTTCGAGCTTACTGTAACTACAGTAAGCCCAGAATTTCTCAACTACAGTGATCCAAATGTGCTCTTTTCAATTCTACAGTAATCCTCACTAATTTAAGGATGAGCAATCGCTTCTAGGGTCAA</canonical>
            <polymorphic>ATGACATTTTTAGGATCAAAAAAGGGATTTTCCGACACATTTCCAGCTGATTTCCACAGCCAATTTATGCGCTCACCATCATATCAACAGCCTTATCAACCTTCTCCCTCTGAATTTCGATGGCTTTCAATCGACAACTCTCGATTGTGATCTGCTGTAGACTCTGGATCAATTCGATTTTCCGATCAATCGATATTTGATATTTGATCTCGGCTTCCTCGAAATGAACGTAGGTACGCAGAAGACGTTCGTATTCTGTCTCCTGGAACATCTCCTCGATTTTCAGACCCCATGCAAGGGCGCGGCGGAAGTGATTGGGTCTGTGCGGAAATTGTAGTTTGAAGAGATTACTGTAGTTTTGAAGTTTCGAAATTTTCTGGATTACTGTAGTCAGGGATTACTGTAGATTTCCGAGCTTGAAATTAGTTCAAAGGATTACTGTCATTTCAGATATTGAGCTTTTTGGATTTCATGATTACTGTAGATTACTGTAGTTTTGKGATTTTCAATTTTCAACGAATTTTGAACCACGAGATTACTGTAGATTTGGAAAATTGAGATTCCTGGATTACTGTAGTTTTCAAAATTTCCAGATTTTTGGATTTCATGATTACCGTATTTTCTTTGTATTTTTCAATTTCGAAGATTACTGTAGTTTAGGATTACTAAAAGGTTTGAATTTTTGAAATTTTTTCATTCCAGGATTACTGTACTTTTGAAATTTTTCAATTTTCTGGATTACTGTAGTTTTCAATTCTGAAGATTCCTATACTTTGGAGACTACTGTAGATTCTCGGACTTGAAAATTCTCAAAAAAAATTTCGAAATTACTGTAACCCACATTACTGTAGATTACTGTAGTTTTCAAACTTGAAAATTTCGAGCTTACTGTAACTACAGTAAGCCCAGAATTTCTCAACTACAGTGATCCAAATGTGCTCTTTTCAATTCTACAGTAATCCTCACTAATTTAAGGATGAGCAATCGCTTCTAGGGTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>310 176 164 87 74 37 35 29 27 19 19 12 11</canonical_bands>
                <polymorphic_bands>310 205 164 87 74 37 35 27 19 19 12 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTAGTTCAAAGGATTACTGTCATT</pcr_primer_p1>
		<pcr_primer_p2>GAAATTCTGGGCTTACTGTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>494</pcr_amplicon_size>
		<canonical_amplicon>ATTAGTTCAAAGGATTACTGTCATTTCAGATATTGAGCTTTTTGGATTTCATGATTACTGTAGATTACTGTAGTTTTGTGATTTTCAATTTTCAACGAATTTTGAACCACGAGATTACTGTAGATTTGGAAAATTGAGATTCCTGGATTACTGTAGTTTTCAAAATTTCCAGATTTTTGGATTTCATGATTACCGTATTTTCTTTGTATTTTTCAATTTCGAAGATTACTGTAGTTTAGGATTACTAAAAGGTTTGAATTTTTGAAATTTTTTCATTCCAGGATTACTGTACTTTTGAAATTTTTCAATTTTCTGGATTACTGTAGTTTTCAATTCTGAAGATTCCTATACTTTGGAGACTACTGTAGATTCTCGGACTTGAAAATTCTCAAAAAAAATTTCGAAATTACTGTAACCCACATTACTGTAGATTACTGTAGTTTTCAAACTTGAAAATTTCGAGCTTACTGTAACTACAGTAAGCCCAGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>ATTAGTTCAAAGGATTACTGTCATTTCAGATATTGAGCTTTTTGGATTTCATGATTACTGTAGATTACTGTAGTTTTGKGATTTTCAATTTTCAACGAATTTTGAACCACGAGATTACTGTAGATTTGGAAAATTGAGATTCCTGGATTACTGTAGTTTTCAAAATTTCCAGATTTTTGGATTTCATGATTACCGTATTTTCTTTGTATTTTTCAATTTCGAAGATTACTGTAGTTTAGGATTACTAAAAGGTTTGAATTTTTGAAATTTTTTCATTCCAGGATTACTGTACTTTTGAAATTTTTCAATTTTCTGGATTACTGTAGTTTTCAATTCTGAAGATTCCTATACTTTGGAGACTACTGTAGATTCTCGGACTTGAAAATTCTCAAAAAAAATTTCGAAATTACTGTAACCCACATTACTGTAGATTACTGTAGTTTTCAAACTTGAAAATTTCGAGCTTACTGTAACTACAGTAAGCCCAGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38164</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>253530</contig_pos>
        <strand>+</strand>
        <context>CCAGAATTTT[C/T]TGGKTTTTAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTT</left_flank>
        <right_flank>TGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTCGCCCGCCGATTTCTCAATTTGTTCGAAATGTTGAACATTGGCCTTGTTGTTCAGGTACGTCTCCCATTGCTCATCCTCTTCCGCCTCCTTTTGAAGTTTTTCTGAAATTTTAGACTCTTAAAAATCTGTATTTTTGAACTTTTAAAGTCATTTTTAGCTCAAAAAACTGAGCATTTCAACCCCAGAATGCTTGAAATTTTACAAATTTTGGCTTCAAAATCCCTATTTTTAGACTTTTCGGGGCATTTTTTGGTCAAAAATGAGCATTTTTCAACTGATTTCGAGCCAAATTCGCGTCTTTAATCCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAG</canonical>
            <polymorphic>AAGTCGCCCGCCGATTTCTCAATTTGTTCGAAATGTTGAACATTGGCCTTGTTGTTCAGGTACGTCTCCCATTGCTCATCCTCTTCCGCCTCCTTTTGAAGTTTTTCTGAAATTTTAGACTCTTAAAAATCTGTATTTTTGAACTTTTAAAGTCATTTTTAGCTCAAAAAACTGAGCATTTCAACCCCAGAATGCTTGAAATTTTACAAATTTTGGCTTCAAAATCCCTATTTTTAGACTTTTCGGGGCATTTTTTGGTCAAAAATGAGCATTTTTCAACTGATTTCGAGCCAAATTCGCGTCTTTAATCCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTYTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTGATTGCTCATGCTTAGAATA</pcr_primer_p1>
		<pcr_primer_p2>CTAAAACTCTGAAAATCGCAATA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAG</canonical_amplicon>
		<polymorphic_amplicon>ACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTYTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38165</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>253534</contig_pos>
        <strand>+</strand>
        <context>AATTTTYTGG[G/T]TTTTAGGGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGG</left_flank>
        <right_flank>TTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCCCGCCGATTTCTCAATTTGTTCGAAATGTTGAACATTGGCCTTGTTGTTCAGGTACGTCTCCCATTGCTCATCCTCTTCCGCCTCCTTTTGAAGTTTTTCTGAAATTTTAGACTCTTAAAAATCTGTATTTTTGAACTTTTAAAGTCATTTTTAGCTCAAAAAACTGAGCATTTCAACCCCAGAATGCTTGAAATTTTACAAATTTTGGCTTCAAAATCCCTATTTTTAGACTTTTCGGGGCATTTTTTGGTCAAAAATGAGCATTTTTCAACTGATTTCGAGCCAAATTCGCGTCTTTAATCCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCA</canonical>
            <polymorphic>CGCCCGCCGATTTCTCAATTTGTTCGAAATGTTGAACATTGGCCTTGTTGTTCAGGTACGTCTCCCATTGCTCATCCTCTTCCGCCTCCTTTTGAAGTTTTTCTGAAATTTTAGACTCTTAAAAATCTGTATTTTTGAACTTTTAAAGTCATTTTTAGCTCAAAAAACTGAGCATTTCAACCCCAGAATGCTTGAAATTTTACAAATTTTGGCTTCAAAATCCCTATTTTTAGACTTTTCGGGGCATTTTTTGGTCAAAAATGAGCATTTTTCAACTGATTTCGAGCCAAATTCGCGTCTTTAATCCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGKTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTGATTGCTCATGCTTAGAATA</pcr_primer_p1>
		<pcr_primer_p2>CTAAAACTCTGAAAATCGCAATA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAG</canonical_amplicon>
		<polymorphic_amplicon>ACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGKTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38166</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>253563</contig_pos>
        <strand>+</strand>
        <context>TCAGATTTTT[A/T]AAGATTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTT</left_flank>
        <right_flank>AAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTGAACATTGGCCTTGTTGTTCAGGTACGTCTCCCATTGCTCATCCTCTTCCGCCTCCTTTTGAAGTTTTTCTGAAATTTTAGACTCTTAAAAATCTGTATTTTTGAACTTTTAAAGTCATTTTTAGCTCAAAAAACTGAGCATTTCAACCCCAGAATGCTTGAAATTTTACAAATTTTGGCTTCAAAATCCCTATTTTTAGACTTTTCGGGGCATTTTTTGGTCAAAAATGAGCATTTTTCAACTGATTTCGAGCCAAATTCGCGTCTTTAATCCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAA</canonical>
            <polymorphic>TGTTGAACATTGGCCTTGTTGTTCAGGTACGTCTCCCATTGCTCATCCTCTTCCGCCTCCTTTTGAAGTTTTTCTGAAATTTTAGACTCTTAAAAATCTGTATTTTTGAACTTTTAAAGTCATTTTTAGCTCAAAAAACTGAGCATTTCAACCCCAGAATGCTTGAAATTTTACAAATTTTGGCTTCAAAATCCCTATTTTTAGACTTTTCGGGGCATTTTTTGGTCAAAAATGAGCATTTTTCAACTGATTTCGAGCCAAATTCGCGTCTTTAATCCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTWAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>384 341 157 115 3</canonical_bands>
                <polymorphic_bands>725 157 115 3</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>341 158 94 90 82 73 44 44 24 20 15 11 4</canonical_bands>
                <polymorphic_bands>435 158 90 82 73 44 44 24 20 15 11 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTGATTGCTCATGCTTAGAATA</pcr_primer_p1>
		<pcr_primer_p2>CTAAAACTCTGAAAATCGCAATA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAG</canonical_amplicon>
		<polymorphic_amplicon>ACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTWAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38167</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>253582</contig_pos>
        <strand>+</strand>
        <context>TTGGGTCAAA[C/G]TTATCGATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAA</left_flank>
        <right_flank>TTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTCAGGTACGTCTCCCATTGCTCATCCTCTTCCGCCTCCTTTTGAAGTTTTTCTGAAATTTTAGACTCTTAAAAATCTGTATTTTTGAACTTTTAAAGTCATTTTTAGCTCAAAAAACTGAGCATTTCAACCCCAGAATGCTTGAAATTTTACAAATTTTGGCTTCAAAATCCCTATTTTTAGACTTTTCGGGGCATTTTTTGGTCAAAAATGAGCATTTTTCAACTGATTTCGAGCCAAATTCGCGTCTTTAATCCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTA</canonical>
            <polymorphic>TGTTCAGGTACGTCTCCCATTGCTCATCCTCTTCCGCCTCCTTTTGAAGTTTTTCTGAAATTTTAGACTCTTAAAAATCTGTATTTTTGAACTTTTAAAGTCATTTTTAGCTCAAAAAACTGAGCATTTCAACCCCAGAATGCTTGAAATTTTACAAATTTTGGCTTCAAAATCCCTATTTTTAGACTTTTCGGGGCATTTTTTGGTCAAAAATGAGCATTTTTCAACTGATTTCGAGCCAAATTCGCGTCTTTAATCCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAASTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTGATTGCTCATGCTTAGAATA</pcr_primer_p1>
		<pcr_primer_p2>CTAAAACTCTGAAAATCGCAATA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAG</canonical_amplicon>
		<polymorphic_amplicon>ACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAASTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38168</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>253622</contig_pos>
        <strand>+</strand>
        <context>ATTTTTAGAT[C/T]TTCAAGATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGAT</left_flank>
        <right_flank>TTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTGAAGTTTTTCTGAAATTTTAGACTCTTAAAAATCTGTATTTTTGAACTTTTAAAGTCATTTTTAGCTCAAAAAACTGAGCATTTCAACCCCAGAATGCTTGAAATTTTACAAATTTTGGCTTCAAAATCCCTATTTTTAGACTTTTCGGGGCATTTTTTGGTCAAAAATGAGCATTTTTCAACTGATTTCGAGCCAAATTCGCGTCTTTAATCCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTC</canonical>
            <polymorphic>CTTTTGAAGTTTTTCTGAAATTTTAGACTCTTAAAAATCTGTATTTTTGAACTTTTAAAGTCATTTTTAGCTCAAAAAACTGAGCATTTCAACCCCAGAATGCTTGAAATTTTACAAATTTTGGCTTCAAAATCCCTATTTTTAGACTTTTCGGGGCATTTTTTGGTCAAAAATGAGCATTTTTCAACTGATTTCGAGCCAAATTCGCGTCTTTAATCCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATYTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCAACTTTCAGTTAGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTCGTGAAAATTGTTATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>GGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATYTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38169</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>253637</contig_pos>
        <strand>+</strand>
        <context>AGATTTTCAG[A/C]CMGSAATATT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAG</left_flank>
        <right_flank>CAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAATTTTAGACTCTTAAAAATCTGTATTTTTGAACTTTTAAAGTCATTTTTAGCTCAAAAAACTGAGCATTTCAACCCCAGAATGCTTGAAATTTTACAAATTTTGGCTTCAAAATCCCTATTTTTAGACTTTTCGGGGCATTTTTTGGTCAAAAATGAGCATTTTTCAACTGATTTCGAGCCAAATTCGCGTCTTTAATCCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCA</canonical>
            <polymorphic>TGAAATTTTAGACTCTTAAAAATCTGTATTTTTGAACTTTTAAAGTCATTTTTAGCTCAAAAAACTGAGCATTTCAACCCCAGAATGCTTGAAATTTTACAAATTTTGGCTTCAAAATCCCTATTTTTAGACTTTTCGGGGCATTTTTTGGTCAAAAATGAGCATTTTTCAACTGATTTCGAGCCAAATTCGCGTCTTTAATCCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGMCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>142 137 74 63 62 55 54 54 51 50 44 31 31 30 30 30 30 29 3</canonical_bands>
                <polymorphic_bands>166 142 74 63 62 55 54 54 51 50 44 31 31 30 30 30 30 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCAACTTTCAGTTAGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTCGTGAAAATTGTTATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>GGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGMCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38170</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>253639</contig_pos>
        <strand>+</strand>
        <context>ATTTTCAGMC[A/C]GSAATATTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCC</left_flank>
        <right_flank>GAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTTAGACTCTTAAAAATCTGTATTTTTGAACTTTTAAAGTCATTTTTAGCTCAAAAAACTGAGCATTTCAACCCCAGAATGCTTGAAATTTTACAAATTTTGGCTTCAAAATCCCTATTTTTAGACTTTTCGGGGCATTTTTTGGTCAAAAATGAGCATTTTTCAACTGATTTCGAGCCAAATTCGCGTCTTTAATCCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAA</canonical>
            <polymorphic>AAATTTTAGACTCTTAAAAATCTGTATTTTTGAACTTTTAAAGTCATTTTTAGCTCAAAAAACTGAGCATTTCAACCCCAGAATGCTTGAAATTTTACAAATTTTGGCTTCAAAATCCCTATTTTTAGACTTTTCGGGGCATTTTTTGGTCAAAAATGAGCATTTTTCAACTGATTTCGAGCCAAATTCGCGTCTTTAATCCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCMGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCAACTTTCAGTTAGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTCGTGAAAATTGTTATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>GGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCMGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38171</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>253641</contig_pos>
        <strand>+</strand>
        <context>TTTCAGMCMG[C/G]AATATTGCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAG</left_flank>
        <right_flank>AATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTAGACTCTTAAAAATCTGTATTTTTGAACTTTTAAAGTCATTTTTAGCTCAAAAAACTGAGCATTTCAACCCCAGAATGCTTGAAATTTTACAAATTTTGGCTTCAAAATCCCTATTTTTAGACTTTTCGGGGCATTTTTTGGTCAAAAATGAGCATTTTTCAACTGATTTCGAGCCAAATTCGCGTCTTTAATCCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATA</canonical>
            <polymorphic>ATTTTAGACTCTTAAAAATCTGTATTTTTGAACTTTTAAAGTCATTTTTAGCTCAAAAAACTGAGCATTTCAACCCCAGAATGCTTGAAATTTTACAAATTTTGGCTTCAAAATCCCTATTTTTAGACTTTTCGGGGCATTTTTTGGTCAAAAATGAGCATTTTTCAACTGATTTCGAGCCAAATTCGCGTCTTTAATCCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGSAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCAACTTTCAGTTAGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTCGTGAAAATTGTTATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>GGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGSAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38172</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>253692</contig_pos>
        <strand>+</strand>
        <context>TTCGATTTTT[C/G]CGGTCCAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTT</left_flank>
        <right_flank>CGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAAAAAACTGAGCATTTCAACCCCAGAATGCTTGAAATTTTACAAATTTTGGCTTCAAAATCCCTATTTTTAGACTTTTCGGGGCATTTTTTGGTCAAAAATGAGCATTTTTCAACTGATTTCGAGCCAAATTCGCGTCTTTAATCCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATTTTGTATGAATTT</canonical>
            <polymorphic>CTCAAAAAACTGAGCATTTCAACCCCAGAATGCTTGAAATTTTACAAATTTTGGCTTCAAAATCCCTATTTTTAGACTTTTCGGGGCATTTTTTGGTCAAAAATGAGCATTTTTCAACTGATTTCGAGCCAAATTCGCGTCTTTAATCCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTSCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATTTTGTATGAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGGTCTACAGTAATCCAGAAT</pcr_primer_p1>
		<pcr_primer_p2>GCTGAAAATCTTGAAAATCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>331</pcr_amplicon_size>
		<canonical_amplicon>TCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGC</canonical_amplicon>
		<polymorphic_amplicon>TCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTSCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38173</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>253741</contig_pos>
        <strand>+</strand>
        <context>TGATTTTTTC[C/T]GMTWACAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTC</left_flank>
        <right_flank>GGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGCTTCAAAATCCCTATTTTTAGACTTTTCGGGGCATTTTTTGGTCAAAAATGAGCATTTTTCAACTGATTTCGAGCCAAATTCGCGTCTTTAATCCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATTTTGTATGAATTTTCAGAATTTTCGGATCAATAATGTTATTTTTTCATGATTTTCAAATGGC</canonical>
            <polymorphic>TTTGGCTTCAAAATCCCTATTTTTAGACTTTTCGGGGCATTTTTTGGTCAAAAATGAGCATTTTTCAACTGATTTCGAGCCAAATTCGCGTCTTTAATCCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCYGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATTTTGTATGAATTTTCAGAATTTTCGGATCAATAATGTTATTTTTTCATGATTTTCAAATGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGTTTTAGGTCGGTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GCTGAAAATCTTGAAAATCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGC</canonical_amplicon>
		<polymorphic_amplicon>AGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCYGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38174</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>253743</contig_pos>
        <strand>+</strand>
        <context>ATTTTTTCYG[A/C]TWACAAATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAG</left_flank>
        <right_flank>TCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGCTTCAAAATCCCTATTTTTAGACTTTTCGGGGCATTTTTTGGTCAAAAATGAGCATTTTTCAACTGATTTCGAGCCAAATTCGCGTCTTTAATCCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATTTTGTATGAATTTTCAGAATTTTCGGATCAATAATGTTATTTTTTCATGATTTTCAAATGGCAA</canonical>
            <polymorphic>TGGCTTCAAAATCCCTATTTTTAGACTTTTCGGGGCATTTTTTGGTCAAAAATGAGCATTTTTCAACTGATTTCGAGCCAAATTCGCGTCTTTAATCCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGMTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATTTTGTATGAATTTTCAGAATTTTCGGATCAATAATGTTATTTTTTCATGATTTTCAAATGGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGTTTTAGGTCGGTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GCTGAAAATCTTGAAAATCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGC</canonical_amplicon>
		<polymorphic_amplicon>AGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGMTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38175</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>253745</contig_pos>
        <strand>+</strand>
        <context>TTTTTCYGMT[A/T]ACAAATTTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGT</left_flank>
        <right_flank>ACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTTCAAAATCCCTATTTTTAGACTTTTCGGGGCATTTTTTGGTCAAAAATGAGCATTTTTCAACTGATTTCGAGCCAAATTCGCGTCTTTAATCCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATTTTGTATGAATTTTCAGAATTTTCGGATCAATAATGTTATTTTTTCATGATTTTCAAATGGCAAAA</canonical>
            <polymorphic>GCTTCAAAATCCCTATTTTTAGACTTTTCGGGGCATTTTTTGGTCAAAAATGAGCATTTTTCAACTGATTTCGAGCCAAATTCGCGTCTTTAATCCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTWACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATTTTGTATGAATTTTCAGAATTTTCGGATCAATAATGTTATTTTTTCATGATTTTCAAATGGCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>264 250 178 136 99 41 32</canonical_bands>
                <polymorphic_bands>296 250 178 136 99 41</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGTTTTAGGTCGGTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GCTGAAAATCTTGAAAATCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGC</canonical_amplicon>
		<polymorphic_amplicon>AGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTWACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38176</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>253772</contig_pos>
        <strand>+</strand>
        <context>CAAAATTTTC[A/G]GCCAGAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTC</left_flank>
        <right_flank>GCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGGGGCATTTTTTGGTCAAAAATGAGCATTTTTCAACTGATTTCGAGCCAAATTCGCGTCTTTAATCCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATTTTGTATGAATTTTCAGAATTTTCGGATCAATAATGTTATTTTTTCATGATTTTCAAATGGCAAAAATTTCAGATTTTTTGCGATTTTTAGAA</canonical>
            <polymorphic>TCGGGGCATTTTTTGGTCAAAAATGAGCATTTTTCAACTGATTTCGAGCCAAATTCGCGTCTTTAATCCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCRGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATTTTGTATGAATTTTCAGAATTTTCGGATCAATAATGTTATTTTTTCATGATTTTCAAATGGCAAAAATTTCAGATTTTTTGCGATTTTTAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>142 138 137 63 62 54 51 50 48 44 31 31 30 30 30 30 29</canonical_bands>
                <polymorphic_bands>167 142 138 63 62 54 51 50 48 44 31 31 30 30 30 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGTTTTAGGTCGGTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GCTGAAAATCTTGAAAATCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGC</canonical_amplicon>
		<polymorphic_amplicon>AGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCRGCCAGAAATTTTAGATTTTCAAGATTTTCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38177</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>253804</contig_pos>
        <strand>+</strand>
        <context>AGATTTTCAG[A/C]CMGAAATTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAG</left_flank>
        <right_flank>CAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAACTGATTTCGAGCCAAATTCGCGTCTTTAATCCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATTTTGTATGAATTTTCAGAATTTTCGGATCAATAATGTTATTTTTTCATGATTTTCAAATGGCAAAAATTTCAGATTTTTTGCGATTTTTAGAATTTTAGGTTGAATTTCTTGATTTTTTTCTGGG</canonical>
            <polymorphic>TTCAACTGATTTCGAGCCAAATTCGCGTCTTTAATCCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGMCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATTTTGTATGAATTTTCAGAATTTTCGGATCAATAATGTTATTTTTTCATGATTTTCAAATGGCAAAAATTTCAGATTTTTTGCGATTTTTAGAATTTTAGGTTGAATTTCTTGATTTTTTTCTGGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>170 142 137 63 62 54 51 50 44 31 31 30 30 30 30 29 16</canonical_bands>
                <polymorphic_bands>170 142 137 63 62 60 54 51 50 44 31 31 30 30 29 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGTTTTAGGTCGGTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GCTGAAAATCTTGAAAATCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGC</canonical_amplicon>
		<polymorphic_amplicon>AGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGMCAGAAATTTTAGATTTTCAAGATTTTCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38178</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>253806</contig_pos>
        <strand>+</strand>
        <context>ATTTTCAGMC[A/C]GAAATTTTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCC</left_flank>
        <right_flank>GAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACTGATTTCGAGCCAAATTCGCGTCTTTAATCCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATTTTGTATGAATTTTCAGAATTTTCGGATCAATAATGTTATTTTTTCATGATTTTCAAATGGCAAAAATTTCAGATTTTTTGCGATTTTTAGAATTTTAGGTTGAATTTCTTGATTTTTTTCTGGGGT</canonical>
            <polymorphic>CAACTGATTTCGAGCCAAATTCGCGTCTTTAATCCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCMGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATTTTGTATGAATTTTCAGAATTTTCGGATCAATAATGTTATTTTTTCATGATTTTCAAATGGCAAAAATTTCAGATTTTTTGCGATTTTTAGAATTTTAGGTTGAATTTCTTGATTTTTTTCTGGGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGTTTTAGGTCGGTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GCTGAAAATCTTGAAAATCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCMGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGC</canonical_amplicon>
		<polymorphic_amplicon>AGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCMGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38179</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>253835</contig_pos>
        <strand>+</strand>
        <context>GATTTTCAGC[A/T]AGAKATTTTK</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGC</left_flank>
        <right_flank>AGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATCCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATTTTGTATGAATTTTCAGAATTTTCGGATCAATAATGTTATTTTTTCATGATTTTCAAATGGCAAAAATTTCAGATTTTTTGCGATTTTTAGAATTTTAGGTTGAATTTCTTGATTTTTTTCTGGGGTTTTTATGTTAAAAACCCTCAAAAACCCTT</canonical>
            <polymorphic>TAATCCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCWAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATTTTGTATGAATTTTCAGAATTTTCGGATCAATAATGTTATTTTTTCATGATTTTCAAATGGCAAAAATTTCAGATTTTTTGCGATTTTTAGAATTTTAGGTTGAATTTCTTGATTTTTTTCTGGGGTTTTTATGTTAAAAACCCTCAAAAACCCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>201 142 137 63 62 54 51 50 44 31 30 30 30 30 29 16</canonical_bands>
                <polymorphic_bands>201 142 137 63 62 60 54 51 50 44 31 30 30 29 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGTTTTAGGTCGGTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GCTGAAAATCTTGAAAATCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCWAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGC</canonical_amplicon>
		<polymorphic_amplicon>AGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCWAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38180</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>253839</contig_pos>
        <strand>+</strand>
        <context>TTCAGCWAGA[G/T]ATTTTKGATT</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGA</left_flank>
        <right_flank>ATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATTTTGTATGAATTTTCAGAATTTTCGGATCAATAATGTTATTTTTTCATGATTTTCAAATGGCAAAAATTTCAGATTTTTTGCGATTTTTAGAATTTTAGGTTGAATTTCTTGATTTTTTTCTGGGGTTTTTATGTTAAAAACCCTCAAAAACCCTTACTT</canonical>
            <polymorphic>CCCCATTTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAKATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATTTTGTATGAATTTTCAGAATTTTCGGATCAATAATGTTATTTTTTCATGATTTTCAAATGGCAAAAATTTCAGATTTTTTGCGATTTTTAGAATTTTAGGTTGAATTTCTTGATTTTTTTCTGGGGTTTTTATGTTAAAAACCCTCAAAAACCCTTACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>127 106 79 74 71 63 57 48 48 33 33 32 30 30 30 30 26 16 14 13 12 10 9 9</canonical_bands>
                <polymorphic_bands>127 106 79 74 71 63 57 48 48 44 33 33 32 30 30 30 26 16 13 12 10 9 9</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>96 74 63 61 57 53 50 48 39 33 32 30 30 30 30 26 25 24 24 24 19 18 16 14 14 13 12 10 10 9 9 7</canonical_bands>
                <polymorphic_bands>96 74 63 61 57 53 50 48 44 39 33 32 30 30 30 26 25 24 24 24 19 18 16 14 13 12 10 10 9 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGTTTTAGGTCGGTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GCTGAAAATCTTGAAAATCTAAA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAKATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGC</canonical_amplicon>
		<polymorphic_amplicon>AGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAKATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38181</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>253845</contig_pos>
        <strand>+</strand>
        <context>WAGAKATTTT[G/T]GATTTTCAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTT</left_flank>
        <right_flank>GATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATTTTGTATGAATTTTCAGAATTTTCGGATCAATAATGTTATTTTTTCATGATTTTCAAATGGCAAAAATTTCAGATTTTTTGCGATTTTTAGAATTTTAGGTTGAATTTCTTGATTTTTTTCTGGGGTTTTTATGTTAAAAACCCTCAAAAACCCTTACTTTTCCAC</canonical>
            <polymorphic>TTTCAGCCCAAAAATGACAATTTCCGGGTCATTTTAAGTCAAAATTTTGCAAATTTTTGCCATTTTCAGCTTTTTTCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTKGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATTTTGTATGAATTTTCAGAATTTTCGGATCAATAATGTTATTTTTTCATGATTTTCAAATGGCAAAAATTTCAGATTTTTTGCGATTTTTAGAATTTTAGGTTGAATTTCTTGATTTTTTTCTGGGGTTTTTATGTTAAAAACCCTCAAAAACCCTTACTTTTCCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGTTTTAGGTCGGTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>AATTTCTGGCTGAAAATCTTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTKGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATT</canonical_amplicon>
		<polymorphic_amplicon>AGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTKGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38182</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>253920</contig_pos>
        <strand>+</strand>
        <context>ATTTCAGATT[A/T]TCCTTTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATT</left_flank>
        <right_flank>TCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATTTTGTATGAATTTTCAGAATTTTCGGATCAATAATGTTATTTTTTCATGATTTTCAAATGGCAAAAATTTCAGATTTTTTGCGATTTTTAGAATTTTAGGTTGAATTTCTTGATTTTTTTCTGGGGTTTTTATGTTAAAAACCCTCAAAAACCCTTACTTTTCCACTGTAATTTGGTCCTATTCTCCTCCAGCTTCTGTCTCCAAATCCACATCTTCCAATTGCTCAAATCCACGTGGCAC</canonical>
            <polymorphic>TCACTGATTGCTCATGCTTAGAATACGATTTTTAATGATTATTGGCTTAAAATTGGCAACTTTCAGTTAGAAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTWTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATTTTGTATGAATTTTCAGAATTTTCGGATCAATAATGTTATTTTTTCATGATTTTCAAATGGCAAAAATTTCAGATTTTTTGCGATTTTTAGAATTTTAGGTTGAATTTCTTGATTTTTTTCTGGGGTTTTTATGTTAAAAACCCTCAAAAACCCTTACTTTTCCACTGTAATTTGGTCCTATTCTCCTCCAGCTTCTGTCTCCAAATCCACATCTTCCAATTGCTCAAATCCACGTGGCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATTTTCAGATTTTTGATTT</pcr_primer_p1>
		<pcr_primer_p2>AAAATCCGACCTAGAACTCTG</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>CGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTT</canonical_amplicon>
		<polymorphic_amplicon>CGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTWTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38183</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>253990</contig_pos>
        <strand>+</strand>
        <context>ATTTTTAATG[A/G]ATTTTTAAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATG</left_flank>
        <right_flank>ATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATTTTGTATGAATTTTCAGAATTTTCGGATCAATAATGTTATTTTTTCATGATTTTCAAATGGCAAAAATTTCAGATTTTTTGCGATTTTTAGAATTTTAGGTTGAATTTCTTGATTTTTTTCTGGGGTTTTTATGTTAAAAACCCTCAAAAACCCTTACTTTTCCACTGTAATTTGGTCCTATTCTCCTCCAGCTTCTGTCTCCAAATCCACATCTTCCAATTGCTCAAATCCACGTGGCACTCGAATTTCCGGATCAAATTTTTGCGAAGAATTCGAATTCGCGGCCGAATTCGTCGCAGCTTTTCATCCA</canonical>
            <polymorphic>AAAAATCGCATTTTCAGGTCTACAGTAATCCAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGRATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATTTTGTATGAATTTTCAGAATTTTCGGATCAATAATGTTATTTTTTCATGATTTTCAAATGGCAAAAATTTCAGATTTTTTGCGATTTTTAGAATTTTAGGTTGAATTTCTTGATTTTTTTCTGGGGTTTTTATGTTAAAAACCCTCAAAAACCCTTACTTTTCCACTGTAATTTGGTCCTATTCTCCTCCAGCTTCTGTCTCCAAATCCACATCTTCCAATTGCTCAAATCCACGTGGCACTCGAATTTCCGGATCAAATTTTTGCGAAGAATTCGAATTCGCGGCCGAATTCGTCGCAGCTTTTCATCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCTGCGATTTTCAGAG</pcr_primer_p1>
		<pcr_primer_p2>AATCGATAATTTTGACCCTAAGT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATT</canonical_amplicon>
		<polymorphic_amplicon>AAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGRATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38184</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>254020</contig_pos>
        <strand>+</strand>
        <context>ACAATTTTCA[A/G]ACATTTTTAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCA</left_flank>
        <right_flank>ACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATTTTGTATGAATTTTCAGAATTTTCGGATCAATAATGTTATTTTTTCATGATTTTCAAATGGCAAAAATTTCAGATTTTTTGCGATTTTTAGAATTTTAGGTTGAATTTCTTGATTTTTTTCTGGGGTTTTTATGTTAAAAACCCTCAAAAACCCTTACTTTTCCACTGTAATTTGGTCCTATTCTCCTCCAGCTTCTGTCTCCAAATCCACATCTTCCAATTGCTCAAATCCACGTGGCACTCGAATTTCCGGATCAAATTTTTGCGAAGAATTCGAATTCGCGGCCGAATTCGTCGCAGCTTTTCATCCAAACGAATTCGGCGCGAAATTCGAATTTTCG</canonical>
            <polymorphic>CAGAATTTTCTGGTTTTTAGGGAGTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCARACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATTTTGTATGAATTTTCAGAATTTTCGGATCAATAATGTTATTTTTTCATGATTTTCAAATGGCAAAAATTTCAGATTTTTTGCGATTTTTAGAATTTTAGGTTGAATTTCTTGATTTTTTTCTGGGGTTTTTATGTTAAAAACCCTCAAAAACCCTTACTTTTCCACTGTAATTTGGTCCTATTCTCCTCCAGCTTCTGTCTCCAAATCCACATCTTCCAATTGCTCAAATCCACGTGGCACTCGAATTTCCGGATCAAATTTTTGCGAAGAATTCGAATTCGCGGCCGAATTCGTCGCAGCTTTTCATCCAAACGAATTCGGCGCGAAATTCGAATTTTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>269 191 104 102 67 64 47 42 41 35 13 9 8 8</canonical_bands>
                <polymorphic_bands>269 191 145 102 67 64 47 42 35 13 9 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCGATTTTCAGAGTTCTAGGT</pcr_primer_p1>
		<pcr_primer_p2>TGAAAATTCATACAAAATCGATAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATTTTGTATGAATTTTCA</canonical_amplicon>
		<polymorphic_amplicon>GCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCARACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATTTTGTATGAATTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38185</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>254043</contig_pos>
        <strand>+</strand>
        <context>CAAAAATTAA[A/T]AGTTTTTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAA</left_flank>
        <right_flank>AGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATTTTGTATGAATTTTCAGAATTTTCGGATCAATAATGTTATTTTTTCATGATTTTCAAATGGCAAAAATTTCAGATTTTTTGCGATTTTTAGAATTTTAGGTTGAATTTCTTGATTTTTTTCTGGGGTTTTTATGTTAAAAACCCTCAAAAACCCTTACTTTTCCACTGTAATTTGGTCCTATTCTCCTCCAGCTTCTGTCTCCAAATCCACATCTTCCAATTGCTCAAATCCACGTGGCACTCGAATTTCCGGATCAAATTTTTGCGAAGAATTCGAATTCGCGGCCGAATTCGTCGCAGCTTTTCATCCAAACGAATTCGGCGCGAAATTCGAATTTTCGAGTTGCGCGATCGACAAAAATCA</canonical>
            <polymorphic>GTCTAATTTTCAGATTTTTAAAGATTTTTTGGGTCAAAGTTATCGATTTTTATGAATTTTCAGGCTAAATTTTTAGATCTTCAAGATTTTCAGCCAGAAATATTGCGATTTTCAGAGTTTTAGGTCGGTGTTTTTTTTTTCGATTTTTGCGGTCCAAAATAACAATTTTCACGAATTTTCAGATTTTTGATTTTTTCAGGTCACAAATTTTAGATTTTCAAAATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTTAGATTTTCAAGATTTTCAGCCAGAAATTTAAAAAAATTTCAGATTTTCCTTTTTTTTTTTTGGCTGAAATTCTGCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAWAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATTTTGTATGAATTTTCAGAATTTTCGGATCAATAATGTTATTTTTTCATGATTTTCAAATGGCAAAAATTTCAGATTTTTTGCGATTTTTAGAATTTTAGGTTGAATTTCTTGATTTTTTTCTGGGGTTTTTATGTTAAAAACCCTCAAAAACCCTTACTTTTCCACTGTAATTTGGTCCTATTCTCCTCCAGCTTCTGTCTCCAAATCCACATCTTCCAATTGCTCAAATCCACGTGGCACTCGAATTTCCGGATCAAATTTTTGCGAAGAATTCGAATTCGCGGCCGAATTCGTCGCAGCTTTTCATCCAAACGAATTCGGCGCGAAATTCGAATTTTCGAGTTGCGCGATCGACAAAAATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCGATTTTCAGAGTTCTAGGT</pcr_primer_p1>
		<pcr_primer_p2>TGAAAATTCATACAAAATCGATAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAAAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATTTTGTATGAATTTTCA</canonical_amplicon>
		<polymorphic_amplicon>GCGATTTTCAGAGTTCTAGGTCGGATTTTCAGATTTTTAATGGATTTTTAAGCCTAAAATTCACAATTTTCAGACATTTTTAGCTCAAAAATTAAWAGTTTTTTCTAGATTTTAAATGTTTTTAGAGAAATTTTAAGCCAATAATTATTTTTCAGGTCAAAAATTCAAGATTTTCAGATTTTCCGAGCCAAATATAGTGATTTTTAAGGTACTTAGGGTCAAAATTATCGATTTTGTATGAATTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38186</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>255567</contig_pos>
        <strand>+</strand>
        <context>TTTTTCTGGA[C/T]TACTGTAGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGA</left_flank>
        <right_flank>TACTGTAGTTACAGTAGGTCTAAAACTGTGGAAAAAAAACTACAGTAATC</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGAAAGGATTACTGTAGTTATGGAAATTGGAAAAAAAATTAAAAACTACAGTAATCCTCAGTTTTCAGAATTTCAGATTTACAAAAAAAAACTACAGTAATCTTGAAATATCAAAATTTCGAAAAATTGGAAATTACAGTAATCCTGAAAGGGTGGAATTTCGAAAAAATTGAAAAGCTACAATAATCTACAGTAATCCTTTGAAAAATGCGATAATTCTATTTTTTAAAGGAATACTGTAGTTAAATTTTTTGATATTGCGGGATTACTGTAGTTACAGTCAGAAACTACAGTAATCCTCAGTCGTCAGAAAATTTCAGATTTACAAAAAGGATCTACAGTAAAAAAAAAAAATCGTGGAATGTCATTTTTCCAATTTTCGAAATTTGAAGGATCTACAGTAATCTTGAAATTCAAAGTCGGAAAAATTGAAAATCTACAATAATCTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGACTACTGTAGTTACAGTAGGTCTAAAACTGTGGAAAAAAAACTACAGTAATCCGGAAACCAAAAATGTCAAAATTTGAAAAACTACAGTAATCCTACATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAATTTTAAAAAACTACAGTAATCCGAGAATTTAAAAAACCCTTTAACAAAATCTACAGTAATATTGGAATCCAAAAACTTC</canonical>
            <polymorphic>TTTTTGAAAGGATTACTGTAGTTATGGAAATTGGAAAAAAAATTAAAAACTACAGTAATCCTCAGTTTTCAGAATTTCAGATTTACAAAAAAAAACTACAGTAATCTTGAAATATCAAAATTTCGAAAAATTGGAAATTACAGTAATCCTGAAAGGGTGGAATTTCGAAAAAATTGAAAAGCTACAATAATCTACAGTAATCCTTTGAAAAATGCGATAATTCTATTTTTTAAAGGAATACTGTAGTTAAATTTTTTGATATTGCGGGATTACTGTAGTTACAGTCAGAAACTACAGTAATCCTCAGTCGTCAGAAAATTTCAGATTTACAAAAAGGATCTACAGTAAAAAAAAAAAATCGTGGAATGTCATTTTTCCAATTTTCGAAATTTGAAGGATCTACAGTAATCTTGAAATTCAAAGTCGGAAAAATTGAAAATCTACAATAATCTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGAYTACTGTAGTTACAGTAGGTCTAAAACTGTGGAAAAAAAACTACAGTAATCCGGAAACCAAAAATGTCAAAATTTGAAAAACTACAGTAATCCTACATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAATTTTAAAAAACTACAGTAATCCGAGAATTTAAAAAACCCTTTAACAAAATCTACAGTAATATTGGAATCCAAAAACTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTCAGATTTACAAAAAGGAT</pcr_primer_p1>
		<pcr_primer_p2>GTTTCCGGATTACTGTAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AAATTTCAGATTTACAAAAAGGATCTACAGTAAAAAAAAAAAATCGTGGAATGTCATTTTTCCAATTTTCGAAATTTGAAGGATCTACAGTAATCTTGAAATTCAAAGTCGGAAAAATTGAAAATCTACAATAATCTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGACTACTGTAGTTACAGTAGGTCTAAAACTGTGGAAAAAAAACTACAGTAATCCGGAAAC</canonical_amplicon>
		<polymorphic_amplicon>AAATTTCAGATTTACAAAAAGGATCTACAGTAAAAAAAAAAAATCGTGGAATGTCATTTTTCCAATTTTCGAAATTTGAAGGATCTACAGTAATCTTGAAATTCAAAGTCGGAAAAATTGAAAATCTACAATAATCTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGAYTACTGTAGTTACAGTAGGTCTAAAACTGTGGAAAAAAAACTACAGTAATCCGGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38187</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>255593</contig_pos>
        <strand>+</strand>
        <context>AGGTCTAAAA[C/T]TGTGGAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGGAATTTTCATTTTTCTGGACTACTGTAGTTACAGTAGGTCTAAAA</left_flank>
        <right_flank>TGTGGAAAAAAAACTACAGTAATCCGGAAACCAAAAATGTCAAAATTTGA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAATTGGAAAAAAAATTAAAAACTACAGTAATCCTCAGTTTTCAGAATTTCAGATTTACAAAAAAAAACTACAGTAATCTTGAAATATCAAAATTTCGAAAAATTGGAAATTACAGTAATCCTGAAAGGGTGGAATTTCGAAAAAATTGAAAAGCTACAATAATCTACAGTAATCCTTTGAAAAATGCGATAATTCTATTTTTTAAAGGAATACTGTAGTTAAATTTTTTGATATTGCGGGATTACTGTAGTTACAGTCAGAAACTACAGTAATCCTCAGTCGTCAGAAAATTTCAGATTTACAAAAAGGATCTACAGTAAAAAAAAAAAATCGTGGAATGTCATTTTTCCAATTTTCGAAATTTGAAGGATCTACAGTAATCTTGAAATTCAAAGTCGGAAAAATTGAAAATCTACAATAATCTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGACTACTGTAGTTACAGTAGGTCTAAAACTGTGGAAAAAAAACTACAGTAATCCGGAAACCAAAAATGTCAAAATTTGAAAAACTACAGTAATCCTACATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAATTTTAAAAAACTACAGTAATCCGAGAATTTAAAAAACCCTTTAACAAAATCTACAGTAATATTGGAATCCAAAAACTTCAAAGTTTGAAGATCTACAGTAACCCA</canonical>
            <polymorphic>GAAATTGGAAAAAAAATTAAAAACTACAGTAATCCTCAGTTTTCAGAATTTCAGATTTACAAAAAAAAACTACAGTAATCTTGAAATATCAAAATTTCGAAAAATTGGAAATTACAGTAATCCTGAAAGGGTGGAATTTCGAAAAAATTGAAAAGCTACAATAATCTACAGTAATCCTTTGAAAAATGCGATAATTCTATTTTTTAAAGGAATACTGTAGTTAAATTTTTTGATATTGCGGGATTACTGTAGTTACAGTCAGAAACTACAGTAATCCTCAGTCGTCAGAAAATTTCAGATTTACAAAAAGGATCTACAGTAAAAAAAAAAAATCGTGGAATGTCATTTTTCCAATTTTCGAAATTTGAAGGATCTACAGTAATCTTGAAATTCAAAGTCGGAAAAATTGAAAATCTACAATAATCTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGACTACTGTAGTTACAGTAGGTCTAAAAYTGTGGAAAAAAAACTACAGTAATCCGGAAACCAAAAATGTCAAAATTTGAAAAACTACAGTAATCCTACATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAATTTTAAAAAACTACAGTAATCCGAGAATTTAAAAAACCCTTTAACAAAATCTACAGTAATATTGGAATCCAAAAACTTCAAAGTTTGAAGATCTACAGTAACCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>60 54 52 51 49 49 48 48 46 46 43 42 42 41 40 40 36 34 33 32 28 17 16 14 13 9 9 8</canonical_bands>
                <polymorphic_bands>60 54 52 51 49 49 48 48 46 46 43 42 42 41 40 40 36 34 33 32 31 28 16 13 9 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTACAGTAATCCATTCTTGTTTTG</pcr_primer_p1>
		<pcr_primer_p2>AGTTTCAGAACTTTAGCGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGACTACTGTAGTTACAGTAGGTCTAAAACTGTGGAAAAAAAACTACAGTAATCCGGAAACCAAAAATGTCAAAATTTGAAAAACTACAGTAATCCTACATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACT</canonical_amplicon>
		<polymorphic_amplicon>CTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGACTACTGTAGTTACAGTAGGTCTAAAAYTGTGGAAAAAAAACTACAGTAATCCGGAAACCAAAAATGTCAAAATTTGAAAAACTACAGTAATCCTACATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38188</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>255658</contig_pos>
        <strand>+</strand>
        <context>CTACAGTAAT[C/G]CTACATTAAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TACAGTAATCCGGAAACCAAAAATGTCAAAATTTGAAAAACTACAGTAAT</left_flank>
        <right_flank>CTACATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAACTACAGTAATCTTGAAATATCAAAATTTCGAAAAATTGGAAATTACAGTAATCCTGAAAGGGTGGAATTTCGAAAAAATTGAAAAGCTACAATAATCTACAGTAATCCTTTGAAAAATGCGATAATTCTATTTTTTAAAGGAATACTGTAGTTAAATTTTTTGATATTGCGGGATTACTGTAGTTACAGTCAGAAACTACAGTAATCCTCAGTCGTCAGAAAATTTCAGATTTACAAAAAGGATCTACAGTAAAAAAAAAAAATCGTGGAATGTCATTTTTCCAATTTTCGAAATTTGAAGGATCTACAGTAATCTTGAAATTCAAAGTCGGAAAAATTGAAAATCTACAATAATCTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGACTACTGTAGTTACAGTAGGTCTAAAACTGTGGAAAAAAAACTACAGTAATCCGGAAACCAAAAATGTCAAAATTTGAAAAACTACAGTAATCCTACATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAATTTTAAAAAACTACAGTAATCCGAGAATTTAAAAAACCCTTTAACAAAATCTACAGTAATATTGGAATCCAAAAACTTCAAAGTTTGAAGATCTACAGTAACCCAGAGCTACAGTAACCCAAAAAAAACTCTGTTTTTGCTCATTTTTGTCCGTTTTTCATGATTTCTGA</canonical>
            <polymorphic>AAAACTACAGTAATCTTGAAATATCAAAATTTCGAAAAATTGGAAATTACAGTAATCCTGAAAGGGTGGAATTTCGAAAAAATTGAAAAGCTACAATAATCTACAGTAATCCTTTGAAAAATGCGATAATTCTATTTTTTAAAGGAATACTGTAGTTAAATTTTTTGATATTGCGGGATTACTGTAGTTACAGTCAGAAACTACAGTAATCCTCAGTCGTCAGAAAATTTCAGATTTACAAAAAGGATCTACAGTAAAAAAAAAAAATCGTGGAATGTCATTTTTCCAATTTTCGAAATTTGAAGGATCTACAGTAATCTTGAAATTCAAAGTCGGAAAAATTGAAAATCTACAATAATCTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGACTACTGTAGTTACAGTAGGTCTAAAACTGTGGAAAAAAAACTACAGTAATCCGGAAACCAAAAATGTCAAAATTTGAAAAACTACAGTAATSCTACATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAATTTTAAAAAACTACAGTAATCCGAGAATTTAAAAAACCCTTTAACAAAATCTACAGTAATATTGGAATCCAAAAACTTCAAAGTTTGAAGATCTACAGTAACCCAGAGCTACAGTAACCCAAAAAAAACTCTGTTTTTGCTCATTTTTGTCCGTTTTTCATGATTTCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTACAGTAATCCATTCTTGTTTTG</pcr_primer_p1>
		<pcr_primer_p2>AGTTTCAGAACTTTAGCGTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGACTACTGTAGTTACAGTAGGTCTAAAACTGTGGAAAAAAAACTACAGTAATCCGGAAACCAAAAATGTCAAAATTTGAAAAACTACAGTAATCCTACATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACT</canonical_amplicon>
		<polymorphic_amplicon>CTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGACTACTGTAGTTACAGTAGGTCTAAAACTGTGGAAAAAAAACTACAGTAATCCGGAAACCAAAAATGTCAAAATTTGAAAAACTACAGTAATSCTACATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38189</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>255726</contig_pos>
        <strand>+</strand>
        <context>CAATTTTCCA[A/T]ACCTACAGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCA</left_flank>
        <right_flank>ACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTTCGAAAAAATTGAAAAGCTACAATAATCTACAGTAATCCTTTGAAAAATGCGATAATTCTATTTTTTAAAGGAATACTGTAGTTAAATTTTTTGATATTGCGGGATTACTGTAGTTACAGTCAGAAACTACAGTAATCCTCAGTCGTCAGAAAATTTCAGATTTACAAAAAGGATCTACAGTAAAAAAAAAAAATCGTGGAATGTCATTTTTCCAATTTTCGAAATTTGAAGGATCTACAGTAATCTTGAAATTCAAAGTCGGAAAAATTGAAAATCTACAATAATCTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGACTACTGTAGTTACAGTAGGTCTAAAACTGTGGAAAAAAAACTACAGTAATCCGGAAACCAAAAATGTCAAAATTTGAAAAACTACAGTAATCCTACATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAATTTTAAAAAACTACAGTAATCCGAGAATTTAAAAAACCCTTTAACAAAATCTACAGTAATATTGGAATCCAAAAACTTCAAAGTTTGAAGATCTACAGTAACCCAGAGCTACAGTAACCCAAAAAAAACTCTGTTTTTGCTCATTTTTGTCCGTTTTTCATGATTTCTGACTCAATTTTTCAAATTTCAAGCTCAATTTTCATGATTTTTGGCTCAATTTTCATGATTTTTAGCTCAA</canonical>
            <polymorphic>GAATTTCGAAAAAATTGAAAAGCTACAATAATCTACAGTAATCCTTTGAAAAATGCGATAATTCTATTTTTTAAAGGAATACTGTAGTTAAATTTTTTGATATTGCGGGATTACTGTAGTTACAGTCAGAAACTACAGTAATCCTCAGTCGTCAGAAAATTTCAGATTTACAAAAAGGATCTACAGTAAAAAAAAAAAATCGTGGAATGTCATTTTTCCAATTTTCGAAATTTGAAGGATCTACAGTAATCTTGAAATTCAAAGTCGGAAAAATTGAAAATCTACAATAATCTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGACTACTGTAGTTACAGTAGGTCTAAAACTGTGGAAAAAAAACTACAGTAATCCGGAAACCAAAAATGTCAAAATTTGAAAAACTACAGTAATCCTACATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCAWACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAATTTTAAAAAACTACAGTAATCCGAGAATTTAAAAAACCCTTTAACAAAATCTACAGTAATATTGGAATCCAAAAACTTCAAAGTTTGAAGATCTACAGTAACCCAGAGCTACAGTAACCCAAAAAAAACTCTGTTTTTGCTCATTTTTGTCCGTTTTTCATGATTTCTGACTCAATTTTTCAAATTTCAAGCTCAATTTTCATGATTTTTGGCTCAATTTTCATGATTTTTAGCTCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTAACCCAAAAATTATAAAGCTC</pcr_primer_p1>
		<pcr_primer_p2>ATTTCGAAAATCTACAGTAATCCT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>ATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAAT</canonical_amplicon>
		<polymorphic_amplicon>ATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCAWACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38190</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>255772</contig_pos>
        <strand>+</strand>
        <context>ACTCGAGAAA[C/T]ACAATGATCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAA</left_flank>
        <right_flank>ACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAAATGCGATAATTCTATTTTTTAAAGGAATACTGTAGTTAAATTTTTTGATATTGCGGGATTACTGTAGTTACAGTCAGAAACTACAGTAATCCTCAGTCGTCAGAAAATTTCAGATTTACAAAAAGGATCTACAGTAAAAAAAAAAAATCGTGGAATGTCATTTTTCCAATTTTCGAAATTTGAAGGATCTACAGTAATCTTGAAATTCAAAGTCGGAAAAATTGAAAATCTACAATAATCTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGACTACTGTAGTTACAGTAGGTCTAAAACTGTGGAAAAAAAACTACAGTAATCCGGAAACCAAAAATGTCAAAATTTGAAAAACTACAGTAATCCTACATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAATTTTAAAAAACTACAGTAATCCGAGAATTTAAAAAACCCTTTAACAAAATCTACAGTAATATTGGAATCCAAAAACTTCAAAGTTTGAAGATCTACAGTAACCCAGAGCTACAGTAACCCAAAAAAAACTCTGTTTTTGCTCATTTTTGTCCGTTTTTCATGATTTCTGACTCAATTTTTCAAATTTCAAGCTCAATTTTCATGATTTTTGGCTCAATTTTCATGATTTTTAGCTCAATTTTCATGCTTTTTGGTCCATTTTCCATGATTTTTGGCTCAATTTT</canonical>
            <polymorphic>TGAAAAATGCGATAATTCTATTTTTTAAAGGAATACTGTAGTTAAATTTTTTGATATTGCGGGATTACTGTAGTTACAGTCAGAAACTACAGTAATCCTCAGTCGTCAGAAAATTTCAGATTTACAAAAAGGATCTACAGTAAAAAAAAAAAATCGTGGAATGTCATTTTTCCAATTTTCGAAATTTGAAGGATCTACAGTAATCTTGAAATTCAAAGTCGGAAAAATTGAAAATCTACAATAATCTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGACTACTGTAGTTACAGTAGGTCTAAAACTGTGGAAAAAAAACTACAGTAATCCGGAAACCAAAAATGTCAAAATTTGAAAAACTACAGTAATCCTACATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAAYACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAATTTTAAAAAACTACAGTAATCCGAGAATTTAAAAAACCCTTTAACAAAATCTACAGTAATATTGGAATCCAAAAACTTCAAAGTTTGAAGATCTACAGTAACCCAGAGCTACAGTAACCCAAAAAAAACTCTGTTTTTGCTCATTTTTGTCCGTTTTTCATGATTTCTGACTCAATTTTTCAAATTTCAAGCTCAATTTTCATGATTTTTGGCTCAATTTTCATGATTTTTAGCTCAATTTTCATGCTTTTTGGTCCATTTTCCATGATTTTTGGCTCAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTAATCCGAGAATCTCAATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCCAGGATTACGGTAGTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAA</canonical_amplicon>
		<polymorphic_amplicon>AGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAAYACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38191</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>255792</contig_pos>
        <strand>+</strand>
        <context>TACAGTAATT[C/T]TAAGCTACAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATT</left_flank>
        <right_flank>TAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTAAAGGAATACTGTAGTTAAATTTTTTGATATTGCGGGATTACTGTAGTTACAGTCAGAAACTACAGTAATCCTCAGTCGTCAGAAAATTTCAGATTTACAAAAAGGATCTACAGTAAAAAAAAAAAATCGTGGAATGTCATTTTTCCAATTTTCGAAATTTGAAGGATCTACAGTAATCTTGAAATTCAAAGTCGGAAAAATTGAAAATCTACAATAATCTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGACTACTGTAGTTACAGTAGGTCTAAAACTGTGGAAAAAAAACTACAGTAATCCGGAAACCAAAAATGTCAAAATTTGAAAAACTACAGTAATCCTACATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAATTTTAAAAAACTACAGTAATCCGAGAATTTAAAAAACCCTTTAACAAAATCTACAGTAATATTGGAATCCAAAAACTTCAAAGTTTGAAGATCTACAGTAACCCAGAGCTACAGTAACCCAAAAAAAACTCTGTTTTTGCTCATTTTTGTCCGTTTTTCATGATTTCTGACTCAATTTTTCAAATTTCAAGCTCAATTTTCATGATTTTTGGCTCAATTTTCATGATTTTTAGCTCAATTTTCATGCTTTTTGGTCCATTTTCCATGATTTTTGGCTCAATTTTCTTGATTTTTGGCTCAATTT</canonical>
            <polymorphic>TTTTTTAAAGGAATACTGTAGTTAAATTTTTTGATATTGCGGGATTACTGTAGTTACAGTCAGAAACTACAGTAATCCTCAGTCGTCAGAAAATTTCAGATTTACAAAAAGGATCTACAGTAAAAAAAAAAAATCGTGGAATGTCATTTTTCCAATTTTCGAAATTTGAAGGATCTACAGTAATCTTGAAATTCAAAGTCGGAAAAATTGAAAATCTACAATAATCTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGACTACTGTAGTTACAGTAGGTCTAAAACTGTGGAAAAAAAACTACAGTAATCCGGAAACCAAAAATGTCAAAATTTGAAAAACTACAGTAATCCTACATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTYTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAATTTTAAAAAACTACAGTAATCCGAGAATTTAAAAAACCCTTTAACAAAATCTACAGTAATATTGGAATCCAAAAACTTCAAAGTTTGAAGATCTACAGTAACCCAGAGCTACAGTAACCCAAAAAAAACTCTGTTTTTGCTCATTTTTGTCCGTTTTTCATGATTTCTGACTCAATTTTTCAAATTTCAAGCTCAATTTTCATGATTTTTGGCTCAATTTTCATGATTTTTAGCTCAATTTTCATGCTTTTTGGTCCATTTTCCATGATTTTTGGCTCAATTTTCTTGATTTTTGGCTCAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>350 263 128 126 73 26 17 12 5</canonical_bands>
                <polymorphic_bands>350 263 254 73 26 17 12 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTAATCCGAGAATCTCAATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCCAGGATTACGGTAGTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAA</canonical_amplicon>
		<polymorphic_amplicon>AGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTYTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38192</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>255814</contig_pos>
        <strand>+</strand>
        <context>AATCCTCGAA[A/T]TTAGGAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAA</left_flank>
        <right_flank>TTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAATTTTTTGATATTGCGGGATTACTGTAGTTACAGTCAGAAACTACAGTAATCCTCAGTCGTCAGAAAATTTCAGATTTACAAAAAGGATCTACAGTAAAAAAAAAAAATCGTGGAATGTCATTTTTCCAATTTTCGAAATTTGAAGGATCTACAGTAATCTTGAAATTCAAAGTCGGAAAAATTGAAAATCTACAATAATCTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGACTACTGTAGTTACAGTAGGTCTAAAACTGTGGAAAAAAAACTACAGTAATCCGGAAACCAAAAATGTCAAAATTTGAAAAACTACAGTAATCCTACATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAATTTTAAAAAACTACAGTAATCCGAGAATTTAAAAAACCCTTTAACAAAATCTACAGTAATATTGGAATCCAAAAACTTCAAAGTTTGAAGATCTACAGTAACCCAGAGCTACAGTAACCCAAAAAAAACTCTGTTTTTGCTCATTTTTGTCCGTTTTTCATGATTTCTGACTCAATTTTTCAAATTTCAAGCTCAATTTTCATGATTTTTGGCTCAATTTTCATGATTTTTAGCTCAATTTTCATGCTTTTTGGTCCATTTTCCATGATTTTTGGCTCAATTTTCTTGATTTTTGGCTCAATTTTCATTATTTTTGGTCCATTTTT</canonical>
            <polymorphic>TAAATTTTTTGATATTGCGGGATTACTGTAGTTACAGTCAGAAACTACAGTAATCCTCAGTCGTCAGAAAATTTCAGATTTACAAAAAGGATCTACAGTAAAAAAAAAAAATCGTGGAATGTCATTTTTCCAATTTTCGAAATTTGAAGGATCTACAGTAATCTTGAAATTCAAAGTCGGAAAAATTGAAAATCTACAATAATCTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGACTACTGTAGTTACAGTAGGTCTAAAACTGTGGAAAAAAAACTACAGTAATCCGGAAACCAAAAATGTCAAAATTTGAAAAACTACAGTAATCCTACATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAWTTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAATTTTAAAAAACTACAGTAATCCGAGAATTTAAAAAACCCTTTAACAAAATCTACAGTAATATTGGAATCCAAAAACTTCAAAGTTTGAAGATCTACAGTAACCCAGAGCTACAGTAACCCAAAAAAAACTCTGTTTTTGCTCATTTTTGTCCGTTTTTCATGATTTCTGACTCAATTTTTCAAATTTCAAGCTCAATTTTCATGATTTTTGGCTCAATTTTCATGATTTTTAGCTCAATTTTCATGCTTTTTGGTCCATTTTCCATGATTTTTGGCTCAATTTTCTTGATTTTTGGCTCAATTTTCATTATTTTTGGTCCATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>148 117 88 71 67 62 51 43 42 42 37 27 27 27 25 21 21 21 16 12 9 9 8 7 2</canonical_bands>
                <polymorphic_bands>148 117 88 71 67 62 51 43 42 42 37 32 27 27 27 21 21 21 16 12 9 9 8 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTAATCCGAGAATCTCAATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCCAGGATTACGGTAGTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAA</canonical_amplicon>
		<polymorphic_amplicon>AGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAWTTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38193</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>255866</contig_pos>
        <strand>+</strand>
        <context>TTCGAAAATT[C/T]GAAAWTTCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATT</left_flank>
        <right_flank>GAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCTCAGTCGTCAGAAAATTTCAGATTTACAAAAAGGATCTACAGTAAAAAAAAAAAATCGTGGAATGTCATTTTTCCAATTTTCGAAATTTGAAGGATCTACAGTAATCTTGAAATTCAAAGTCGGAAAAATTGAAAATCTACAATAATCTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGACTACTGTAGTTACAGTAGGTCTAAAACTGTGGAAAAAAAACTACAGTAATCCGGAAACCAAAAATGTCAAAATTTGAAAAACTACAGTAATCCTACATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAATTTTAAAAAACTACAGTAATCCGAGAATTTAAAAAACCCTTTAACAAAATCTACAGTAATATTGGAATCCAAAAACTTCAAAGTTTGAAGATCTACAGTAACCCAGAGCTACAGTAACCCAAAAAAAACTCTGTTTTTGCTCATTTTTGTCCGTTTTTCATGATTTCTGACTCAATTTTTCAAATTTCAAGCTCAATTTTCATGATTTTTGGCTCAATTTTCATGATTTTTAGCTCAATTTTCATGCTTTTTGGTCCATTTTCCATGATTTTTGGCTCAATTTTCTTGATTTTTGGCTCAATTTTCATTATTTTTGGTCCATTTTTCATGATTTTTGGCTTATTTTCATGCTTTTTAGCTCATTTTTCATAATTTTCG</canonical>
            <polymorphic>ATCCTCAGTCGTCAGAAAATTTCAGATTTACAAAAAGGATCTACAGTAAAAAAAAAAAATCGTGGAATGTCATTTTTCCAATTTTCGAAATTTGAAGGATCTACAGTAATCTTGAAATTCAAAGTCGGAAAAATTGAAAATCTACAATAATCTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGACTACTGTAGTTACAGTAGGTCTAAAACTGTGGAAAAAAAACTACAGTAATCCGGAAACCAAAAATGTCAAAATTTGAAAAACTACAGTAATCCTACATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTYGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAATTTTAAAAAACTACAGTAATCCGAGAATTTAAAAAACCCTTTAACAAAATCTACAGTAATATTGGAATCCAAAAACTTCAAAGTTTGAAGATCTACAGTAACCCAGAGCTACAGTAACCCAAAAAAAACTCTGTTTTTGCTCATTTTTGTCCGTTTTTCATGATTTCTGACTCAATTTTTCAAATTTCAAGCTCAATTTTCATGATTTTTGGCTCAATTTTCATGATTTTTAGCTCAATTTTCATGCTTTTTGGTCCATTTTCCATGATTTTTGGCTCAATTTTCTTGATTTTTGGCTCAATTTTCATTATTTTTGGTCCATTTTTCATGATTTTTGGCTTATTTTCATGCTTTTTAGCTCATTTTTCATAATTTTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>196 183 157 117 88 71 67 42 27 27 17 8</canonical_bands>
                <polymorphic_bands>196 183 157 117 88 71 67 50 27 27 17</polymorphic_bands>
            </assay>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>467 406 85 34 8</canonical_bands>
                <polymorphic_bands>467 406 85 42</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>466 313 86 45 40 34 8 8</canonical_bands>
                <polymorphic_bands>466 313 86 45 42 40 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTAATCCGAGAATCTCAATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCCAGGATTACGGTAGTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAA</canonical_amplicon>
		<polymorphic_amplicon>AGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTYGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38194</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>255871</contig_pos>
        <strand>+</strand>
        <context>AAATTYGAAA[A/T]TTCTATTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAA</left_flank>
        <right_flank>TTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTCGTCAGAAAATTTCAGATTTACAAAAAGGATCTACAGTAAAAAAAAAAAATCGTGGAATGTCATTTTTCCAATTTTCGAAATTTGAAGGATCTACAGTAATCTTGAAATTCAAAGTCGGAAAAATTGAAAATCTACAATAATCTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGACTACTGTAGTTACAGTAGGTCTAAAACTGTGGAAAAAAAACTACAGTAATCCGGAAACCAAAAATGTCAAAATTTGAAAAACTACAGTAATCCTACATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAATTTTAAAAAACTACAGTAATCCGAGAATTTAAAAAACCCTTTAACAAAATCTACAGTAATATTGGAATCCAAAAACTTCAAAGTTTGAAGATCTACAGTAACCCAGAGCTACAGTAACCCAAAAAAAACTCTGTTTTTGCTCATTTTTGTCCGTTTTTCATGATTTCTGACTCAATTTTTCAAATTTCAAGCTCAATTTTCATGATTTTTGGCTCAATTTTCATGATTTTTAGCTCAATTTTCATGCTTTTTGGTCCATTTTCCATGATTTTTGGCTCAATTTTCTTGATTTTTGGCTCAATTTTCATTATTTTTGGTCCATTTTTCATGATTTTTGGCTTATTTTCATGCTTTTTAGCTCATTTTTCATAATTTTCGGCTCA</canonical>
            <polymorphic>CAGTCGTCAGAAAATTTCAGATTTACAAAAAGGATCTACAGTAAAAAAAAAAAATCGTGGAATGTCATTTTTCCAATTTTCGAAATTTGAAGGATCTACAGTAATCTTGAAATTCAAAGTCGGAAAAATTGAAAATCTACAATAATCTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGACTACTGTAGTTACAGTAGGTCTAAAACTGTGGAAAAAAAACTACAGTAATCCGGAAACCAAAAATGTCAAAATTTGAAAAACTACAGTAATCCTACATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAWTTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAATTTTAAAAAACTACAGTAATCCGAGAATTTAAAAAACCCTTTAACAAAATCTACAGTAATATTGGAATCCAAAAACTTCAAAGTTTGAAGATCTACAGTAACCCAGAGCTACAGTAACCCAAAAAAAACTCTGTTTTTGCTCATTTTTGTCCGTTTTTCATGATTTCTGACTCAATTTTTCAAATTTCAAGCTCAATTTTCATGATTTTTGGCTCAATTTTCATGATTTTTAGCTCAATTTTCATGCTTTTTGGTCCATTTTCCATGATTTTTGGCTCAATTTTCTTGATTTTTGGCTCAATTTTCATTATTTTTGGTCCATTTTTCATGATTTTTGGCTTATTTTCATGCTTTTTAGCTCATTTTTCATAATTTTCGGCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>201 183 157 117 88 71 67 42 27 27 12 8</canonical_bands>
                <polymorphic_bands>201 183 157 125 88 71 67 42 27 27 12</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>148 117 88 71 71 62 51 43 42 42 37 27 27 25 21 21 21 16 13 12 12 9 9 8 7</canonical_bands>
                <polymorphic_bands>148 125 88 71 71 62 51 43 42 42 37 27 27 25 21 21 21 16 13 12 12 9 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTAATCCGAGAATCTCAATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTCCAGGATTACGGTAGTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAA</canonical_amplicon>
		<polymorphic_amplicon>AGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAWTTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38195</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>255906</contig_pos>
        <strand>+</strand>
        <context>TTTTCGAAAT[C/G]GCGYTTGTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAAT</left_flank>
        <right_flank>GCGCTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCCCAAATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTACAGTAAAAAAAAAAAATCGTGGAATGTCATTTTTCCAATTTTCGAAATTTGAAGGATCTACAGTAATCTTGAAATTCAAAGTCGGAAAAATTGAAAATCTACAATAATCTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGACTACTGTAGTTACAGTAGGTCTAAAACTGTGGAAAAAAAACTACAGTAATCCGGAAACCAAAAATGTCAAAATTTGAAAAACTACAGTAATCCTACATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAATTTTAAAAAACTACAGTAATCCGAGAATTTAAAAAACCCTTTAACAAAATCTACAGTAATATTGGAATCCAAAAACTTCAAAGTTTGAAGATCTACAGTAACCCAGAGCTACAGTAACCCAAAAAAAACTCTGTTTTTGCTCATTTTTGTCCGTTTTTCATGATTTCTGACTCAATTTTTCAAATTTCAAGCTCAATTTTCATGATTTTTGGCTCAATTTTCATGATTTTTAGCTCAATTTTCATGCTTTTTGGTCCATTTTCCATGATTTTTGGCTCAATTTTCTTGATTTTTGGCTCAATTTTCATTATTTTTGGTCCATTTTTCATGATTTTTGGCTTATTTTCATGCTTTTTAGCTCATTTTTCATAATTTTCGGCTCAATTTTCAGAGTTTTCTGCTAATTTTTTATGATTTT</canonical>
            <polymorphic>CTACAGTAAAAAAAAAAAATCGTGGAATGTCATTTTTCCAATTTTCGAAATTTGAAGGATCTACAGTAATCTTGAAATTCAAAGTCGGAAAAATTGAAAATCTACAATAATCTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGACTACTGTAGTTACAGTAGGTCTAAAACTGTGGAAAAAAAACTACAGTAATCCGGAAACCAAAAATGTCAAAATTTGAAAAACTACAGTAATCCTACATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATSGCGCTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAATTTTAAAAAACTACAGTAATCCGAGAATTTAAAAAACCCTTTAACAAAATCTACAGTAATATTGGAATCCAAAAACTTCAAAGTTTGAAGATCTACAGTAACCCAGAGCTACAGTAACCCAAAAAAAACTCTGTTTTTGCTCATTTTTGTCCGTTTTTCATGATTTCTGACTCAATTTTTCAAATTTCAAGCTCAATTTTCATGATTTTTGGCTCAATTTTCATGATTTTTAGCTCAATTTTCATGCTTTTTGGTCCATTTTCCATGATTTTTGGCTCAATTTTCTTGATTTTTGGCTCAATTTTCATTATTTTTGGTCCATTTTTCATGATTTTTGGCTTATTTTCATGCTTTTTAGCTCATTTTTCATAATTTTCGGCTCAATTTTCAGAGTTTTCTGCTAATTTTTTATGATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAACGCTAAAGTTCTGAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTCGGAAATCTTGGAATCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAAT</canonical_amplicon>
		<polymorphic_amplicon>GAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATSGCGCTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38196</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>255910</contig_pos>
        <strand>+</strand>
        <context>CGAAATSGCG[C/T]TTGTTTTTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCG</left_flank>
        <right_flank>TTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCCCAAATCTACA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTAAAAAAAAAAAATCGTGGAATGTCATTTTTCCAATTTTCGAAATTTGAAGGATCTACAGTAATCTTGAAATTCAAAGTCGGAAAAATTGAAAATCTACAATAATCTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGACTACTGTAGTTACAGTAGGTCTAAAACTGTGGAAAAAAAACTACAGTAATCCGGAAACCAAAAATGTCAAAATTTGAAAAACTACAGTAATCCTACATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAATTTTAAAAAACTACAGTAATCCGAGAATTTAAAAAACCCTTTAACAAAATCTACAGTAATATTGGAATCCAAAAACTTCAAAGTTTGAAGATCTACAGTAACCCAGAGCTACAGTAACCCAAAAAAAACTCTGTTTTTGCTCATTTTTGTCCGTTTTTCATGATTTCTGACTCAATTTTTCAAATTTCAAGCTCAATTTTCATGATTTTTGGCTCAATTTTCATGATTTTTAGCTCAATTTTCATGCTTTTTGGTCCATTTTCCATGATTTTTGGCTCAATTTTCTTGATTTTTGGCTCAATTTTCATTATTTTTGGTCCATTTTTCATGATTTTTGGCTTATTTTCATGCTTTTTAGCTCATTTTTCATAATTTTCGGCTCAATTTTCAGAGTTTTCTGCTAATTTTTTATGATTTTCGGC</canonical>
            <polymorphic>AGTAAAAAAAAAAAATCGTGGAATGTCATTTTTCCAATTTTCGAAATTTGAAGGATCTACAGTAATCTTGAAATTCAAAGTCGGAAAAATTGAAAATCTACAATAATCTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGACTACTGTAGTTACAGTAGGTCTAAAACTGTGGAAAAAAAACTACAGTAATCCGGAAACCAAAAATGTCAAAATTTGAAAAACTACAGTAATCCTACATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGYTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAATTTTAAAAAACTACAGTAATCCGAGAATTTAAAAAACCCTTTAACAAAATCTACAGTAATATTGGAATCCAAAAACTTCAAAGTTTGAAGATCTACAGTAACCCAGAGCTACAGTAACCCAAAAAAAACTCTGTTTTTGCTCATTTTTGTCCGTTTTTCATGATTTCTGACTCAATTTTTCAAATTTCAAGCTCAATTTTCATGATTTTTGGCTCAATTTTCATGATTTTTAGCTCAATTTTCATGCTTTTTGGTCCATTTTCCATGATTTTTGGCTCAATTTTCTTGATTTTTGGCTCAATTTTCATTATTTTTGGTCCATTTTTCATGATTTTTGGCTTATTTTCATGCTTTTTAGCTCATTTTTCATAATTTTCGGCTCAATTTTCAGAGTTTTCTGCTAATTTTTTATGATTTTCGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAACGCTAAAGTTCTGAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTCGGAAATCTTGGAATCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAAT</canonical_amplicon>
		<polymorphic_amplicon>GAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGYTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38197</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>255950</contig_pos>
        <strand>+</strand>
        <context>CTCAACTAGC[C/T]CAAATCTACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGC</left_flank>
        <right_flank>CAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAATTTTAAAAAACT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAAATTTGAAGGATCTACAGTAATCTTGAAATTCAAAGTCGGAAAAATTGAAAATCTACAATAATCTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGACTACTGTAGTTACAGTAGGTCTAAAACTGTGGAAAAAAAACTACAGTAATCCGGAAACCAAAAATGTCAAAATTTGAAAAACTACAGTAATCCTACATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAATTTTAAAAAACTACAGTAATCCGAGAATTTAAAAAACCCTTTAACAAAATCTACAGTAATATTGGAATCCAAAAACTTCAAAGTTTGAAGATCTACAGTAACCCAGAGCTACAGTAACCCAAAAAAAACTCTGTTTTTGCTCATTTTTGTCCGTTTTTCATGATTTCTGACTCAATTTTTCAAATTTCAAGCTCAATTTTCATGATTTTTGGCTCAATTTTCATGATTTTTAGCTCAATTTTCATGCTTTTTGGTCCATTTTCCATGATTTTTGGCTCAATTTTCTTGATTTTTGGCTCAATTTTCATTATTTTTGGTCCATTTTTCATGATTTTTGGCTTATTTTCATGCTTTTTAGCTCATTTTTCATAATTTTCGGCTCAATTTTCAGAGTTTTCTGCTAATTTTTTATGATTTTCGGCTCAATTTTCATGATTTTTGGCTCATTTTTATTGACTTTTC</canonical>
            <polymorphic>TCGAAATTTGAAGGATCTACAGTAATCTTGAAATTCAAAGTCGGAAAAATTGAAAATCTACAATAATCTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGACTACTGTAGTTACAGTAGGTCTAAAACTGTGGAAAAAAAACTACAGTAATCCGGAAACCAAAAATGTCAAAATTTGAAAAACTACAGTAATCCTACATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCYCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAATTTTAAAAAACTACAGTAATCCGAGAATTTAAAAAACCCTTTAACAAAATCTACAGTAATATTGGAATCCAAAAACTTCAAAGTTTGAAGATCTACAGTAACCCAGAGCTACAGTAACCCAAAAAAAACTCTGTTTTTGCTCATTTTTGTCCGTTTTTCATGATTTCTGACTCAATTTTTCAAATTTCAAGCTCAATTTTCATGATTTTTGGCTCAATTTTCATGATTTTTAGCTCAATTTTCATGCTTTTTGGTCCATTTTCCATGATTTTTGGCTCAATTTTCTTGATTTTTGGCTCAATTTTCATTATTTTTGGTCCATTTTTCATGATTTTTGGCTTATTTTCATGCTTTTTAGCTCATTTTTCATAATTTTCGGCTCAATTTTCAGAGTTTTCTGCTAATTTTTTATGATTTTCGGCTCAATTTTCATGATTTTTGGCTCATTTTTATTGACTTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>233 148 113 112 83 42 42 42 40 21 21 21 21 21 20 20</canonical_bands>
                <polymorphic_bands>260 233 113 83 42 42 42 40 21 21 21 21 21 20 20</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTCAGGATTACTGTAGATTTTC</pcr_primer_p1>
		<pcr_primer_p2>GGTTACTGTAGCTCTGGGTTACT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAATTTTAAAAAACTACAGTAATCCGAGAATTTAAAAAACCCTTTAACAAAATCTACAGTAATATTGGAATCCAAAAACTTCAAAGTTTGAAGATCTACAGTAACCCAGAGCTACAGTAACC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCYCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAATTTTAAAAAACTACAGTAATCCGAGAATTTAAAAAACCCTTTAACAAAATCTACAGTAATATTGGAATCCAAAAACTTCAAAGTTTGAAGATCTACAGTAACCCAGAGCTACAGTAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38198</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>255998</contig_pos>
        <strand>+</strand>
        <context>ATTTTAAAAA[A/G]CTACAGTAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAATTTTAAAAA</left_flank>
        <right_flank>CTACAGTAATCCGAGAATTTAAAAAACCCTTTAACAAAATCTACAGTAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGAAAATCTACAATAATCTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGACTACTGTAGTTACAGTAGGTCTAAAACTGTGGAAAAAAAACTACAGTAATCCGGAAACCAAAAATGTCAAAATTTGAAAAACTACAGTAATCCTACATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAATTTTAAAAAACTACAGTAATCCGAGAATTTAAAAAACCCTTTAACAAAATCTACAGTAATATTGGAATCCAAAAACTTCAAAGTTTGAAGATCTACAGTAACCCAGAGCTACAGTAACCCAAAAAAAACTCTGTTTTTGCTCATTTTTGTCCGTTTTTCATGATTTCTGACTCAATTTTTCAAATTTCAAGCTCAATTTTCATGATTTTTGGCTCAATTTTCATGATTTTTAGCTCAATTTTCATGCTTTTTGGTCCATTTTCCATGATTTTTGGCTCAATTTTCTTGATTTTTGGCTCAATTTTCATTATTTTTGGTCCATTTTTCATGATTTTTGGCTTATTTTCATGCTTTTTAGCTCATTTTTCATAATTTTCGGCTCAATTTTCAGAGTTTTCTGCTAATTTTTTATGATTTTCGGCTCAATTTTCATGATTTTTGGCTCATTTTTATTGACTTTTCCCGCTTTTTTCCCCACAAAATACCTCATTTTTCAGCTGGAAATCCTCC</canonical>
            <polymorphic>ATTGAAAATCTACAATAATCTACAGTAATCCATTCTTGTTTTGGTTTTGGAATTTTCATTTTTCTGGACTACTGTAGTTACAGTAGGTCTAAAACTGTGGAAAAAAAACTACAGTAATCCGGAAACCAAAAATGTCAAAATTTGAAAAACTACAGTAATCCTACATTAACCCAAAAATTATAAAGCTCTACAAAAATCTACAGTAATCCGAGAATCTCAATTTTCCAAACCTACAGTAATCCTGAAAACGCTAAAGTTCTGAAACTCGAGAAATACAATGATCTACAGTAATTTTAAGCTACAGTAATCCTCGAAATTAGGAATTTCTACAAAAAAAGCTACAGTAATCCTCGAGATTTCGAAAATTCGAAAATTCTATTTTCAGGATTACTGTAGATTTTCGAAATCGCGCTTGTTTTTTAACTACCGTAATCCTGGAATCTCAACTAGCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAATTTTAAAAARCTACAGTAATCCGAGAATTTAAAAAACCCTTTAACAAAATCTACAGTAATATTGGAATCCAAAAACTTCAAAGTTTGAAGATCTACAGTAACCCAGAGCTACAGTAACCCAAAAAAAACTCTGTTTTTGCTCATTTTTGTCCGTTTTTCATGATTTCTGACTCAATTTTTCAAATTTCAAGCTCAATTTTCATGATTTTTGGCTCAATTTTCATGATTTTTAGCTCAATTTTCATGCTTTTTGGTCCATTTTCCATGATTTTTGGCTCAATTTTCTTGATTTTTGGCTCAATTTTCATTATTTTTGGTCCATTTTTCATGATTTTTGGCTTATTTTCATGCTTTTTAGCTCATTTTTCATAATTTTCGGCTCAATTTTCAGAGTTTTCTGCTAATTTTTTATGATTTTCGGCTCAATTTTCATGATTTTTGGCTCATTTTTATTGACTTTTCCCGCTTTTTTCCCCACAAAATACCTCATTTTTCAGCTGGAAATCCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAATCCTGGAATCTCAACTAGC</pcr_primer_p1>
		<pcr_primer_p2>GAAATTTGAAAAATTGAGTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTAATCCTGGAATCTCAACTAGCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAATTTTAAAAAACTACAGTAATCCGAGAATTTAAAAAACCCTTTAACAAAATCTACAGTAATATTGGAATCCAAAAACTTCAAAGTTTGAAGATCTACAGTAACCCAGAGCTACAGTAACCCAAAAAAAACTCTGTTTTTGCTCATTTTTGTCCGTTTTTCATGATTTCTGACTCAATTTTTCAAATTTC</canonical_amplicon>
		<polymorphic_amplicon>GTAATCCTGGAATCTCAACTAGCCCAAATCTACAGTAATCCTGAGATTCCAAGATTTCCGAATTTTAAAAARCTACAGTAATCCGAGAATTTAAAAAACCCTTTAACAAAATCTACAGTAATATTGGAATCCAAAAACTTCAAAGTTTGAAGATCTACAGTAACCCAGAGCTACAGTAACCCAAAAAAAACTCTGTTTTTGCTCATTTTTGTCCGTTTTTCATGATTTCTGACTCAATTTTTCAAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38199</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>269065</contig_pos>
        <strand>+</strand>
        <context>gttttgtccg[C/T]aaacaccaGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGTAAGACATCGAAAATTCAAAATGTCGTAAAATGTGATGTTTTGTCCG</left_flank>
        <right_flank>AAACACCAGAAACCGTTGTTTAAAGCTCAAATAAGGGAATTTCTAGGCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTAAGAAACTTGCAACTATTCAAATTGTCGTAAGATCTGATGTTTTGTCTGTAAACACGGAAAATCGGTTTATGAAGCTCGAACCGGCGACTTTTCAGAGTCAAATTTTGCAGGAAATTCAATTTTCTCGATTAGAACAATTCAAAAATACAGTAAGACACAGAAAATTAGAATTGTCGTAAAGTTTGATGTTTCGTCCGTGAACACCAAAACCGGGGTTTGGGTCTCAAAAAAGCGATTCACTAGAGTGAAGTTTTGCGGGAAATTCGAATTTCAGGGTTAGAATTTGTCAAAATTACAGTAAGATACCAAAAACTCAAATTGTCGTAAAATGTGATGTTTTGTCCGTAAACACGGAAAACCGAGGTAGCCGTATCAAAAAAAGTTACTTCCCGAGGTGAAAATTTGCGGGAAATTTGATTTTCCGCATTGAAAGACTTCAAAACTACAGTAAGACATCGAAAATTCAAAATGTCGTAAAATGTGATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTCAAATAAGGGAATTTCTAGGCTGAAATTTTGCGGGGAATTCGATTTTCGAAGTTAGAACAGTGGAAAACTACCGTAAGACACAGAAAATTCAAATTGTCGTAAAATGTTATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTCAAATAAGGGAATTTCTAGGCTGAAATTTTGCGGGGAATTCGATTTTCGAAGTTAGAACAGTGGAAAACTACCGTAAGACACAGAAAATTCAAATTGTCGTAAAATGTTATGTTTTGTCCGTAAACACGGAATATCGTTGTTTTAGGCTAAGAAACCGGGGTTGAGTCTCAAAAAGCCATTTTCTAGGATGAAATTTCGCGAGAAACTCGATTTTCGGGGTTTGAACTCTTCAAAATGTCAAAATGACCGTAATATTGAGCATTTCCTGAATGCGATTTCCCATTTTTCCGCCGAATCCTCTCACATCTCCAATTGGCGTCGTT</canonical>
            <polymorphic>ACTAAGAAACTTGCAACTATTCAAATTGTCGTAAGATCTGATGTTTTGTCTGTAAACACGGAAAATCGGTTTATGAAGCTCGAACCGGCGACTTTTCAGAGTCAAATTTTGCAGGAAATTCAATTTTCTCGATTAGAACAATTCAAAAATACAGTAAGACACAGAAAATTAGAATTGTCGTAAAGTTTGATGTTTCGTCCGTGAACACCAAAACCGGGGTTTGGGTCTCAAAAAAGCGATTCACTAGAGTGAAGTTTTGCGGGAAATTCGAATTTCAGGGTTAGAATTTGTCAAAATTACAGTAAGATACCAAAAACTCAAATTGTCGTAAAATGTGATGTTTTGTCCGTAAACACGGAAAACCGAGGTAGCCGTATCAAAAAAAGTTACTTCCCGAGGTGAAAATTTGCGGGAAATTTGATTTTCCGCATTGAAAGACTTCAAAACTACAGTAAGACATCGAAAATTCAAAATGTCGTAAAATGTGATGTTTTGTCCGYAAACACCAGAAACCGTTGTTTAAAGCTCAAATAAGGGAATTTCTAGGCTGAAATTTTGCGGGGAATTCGATTTTCGAAGTTAGAACAGTGGAAAACTACCGTAAGACACAGAAAATTCAAATTGTCGTAAAATGTTATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTCAAATAAGGGAATTTCTAGGCTGAAATTTTGCGGGGAATTCGATTTTCGAAGTTAGAACAGTGGAAAACTACCGTAAGACACAGAAAATTCAAATTGTCGTAAAATGTTATGTTTTGTCCGTAAACACGGAATATCGTTGTTTTAGGCTAAGAAACCGGGGTTGAGTCTCAAAAAGCCATTTTCTAGGATGAAATTTCGCGAGAAACTCGATTTTCGGGGTTTGAACTCTTCAAAATGTCAAAATGACCGTAATATTGAGCATTTCCTGAATGCGATTTCCCATTTTTCCGCCGAATCCTCTCACATCTCCAATTGGCGTCGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>201 150 149 149 149 148 54</canonical_bands>
                <polymorphic_bands>299 201 149 149 148 54</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCATTGAAAGACTTCAAAACTAC</pcr_primer_p1>
		<pcr_primer_p2>GAGCTTTAAACAACGGTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCATTGAAAGACTTCAAAACTACAGTAAGACATCGAAAATTCAAAATGTCGTAAAATGTGATGTTTTGTCCGTAAACACCAGAAACCGTTGTTTAAAGCTC</canonical_amplicon>
		<polymorphic_amplicon>GCATTGAAAGACTTCAAAACTACAGTAAGACATCGAAAATTCAAAATGTCGTAAAATGTGATGTTTTGTCCGYAAACACCAGAAACCGTTGTTTAAAGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38200</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>270850</contig_pos>
        <strand>+</strand>
        <context>GGTATTTTCT[A/G]AAGATTTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTTTTTAGGCATAATTATGAGAAAAACTTAGTTTTGGAAGGTATTTTCT</left_flank>
        <right_flank>AAGATTTTCATTGAAAATTTGCATTTAAAAGGTTCCAAAATGTTCCAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATTTTTCTGCACTTTTTAGGCCAAAAAACTCATTTTTCAGCGATTCTTAACCTAAAATAAACAATTTTTCAACAATTTTTAGGCCAAAAAACTTATTTTTCCACAATTTTTAGGCCGAAAAATCGATTTTCCAGCAGTTTCTACCTTAACAATCTCTTCCAATTGCCCATTTTCCCGAATTTCCTCCAATTTTTGGTTGGTATAAGCGGTTAAATCCAAAAACGCCTCATCCACAGACGCCTTCTCCACAATTATCGTCGAGTCGAAATTGTTGAGCACTCGGAACACTTCAGCACTGGCATCTCTGCGAAATTTAGCTTTTTTTATGGGTTTCAAGGCCTTAAACTTGATTTTCAAGCAATTTTTGGGCTCCGGAAGCTTCCAGAACCCCTAAAACAGCTTTTGGGCGATTTTGGACTTACAAATCGGATTTTTTGACAATTTTTGAGTTTTTAGGCATAATTATGAGAAAAACTTAGTTTTGGAAGGTATTTTCTGAAGATTTTCATTGAAAATTTGCATTTAAAAGGTTCCAAAATGTTCCAGAAGCGCTATATGCATTTTTTACATTTATACAGGCATTGTTCAGGGTTTCTGGCGACTTTTATGTTTTGGAAGCGTCTAGAAAGCTCCAGAACGACTTTTCAGCGGTTCTTCGGGCAGTTTTTGAGGATATTTATTGAAAAATTTGATTCTAAAATGTTCTAGATGCTCTATACAACGTTTAGAGAGCGTTTCTGGAAGCCTCCAGAAAGCTCCAGAAGCTTTTTTCAGCTTCAGAAGCTTCGAGATCCTCTAAAGCAGCTTTTGGCCGGATTTTTATGGAAAAATTGGTTTTAAACCGTTCCGGAATGCTCTAGAATGAATTTTTGAATCCGAATTATACTTCTCTAAAACAGCTTTTGGCCGGTTTTTATGCCATTTTTATTGAAAAATTGCTTCAAGAATGTTCTAGAAGCGGTATCTATGATTTTTGGTGTTTTTTAGGTTCTGGAAGC</canonical>
            <polymorphic>CGATTTTTCTGCACTTTTTAGGCCAAAAAACTCATTTTTCAGCGATTCTTAACCTAAAATAAACAATTTTTCAACAATTTTTAGGCCAAAAAACTTATTTTTCCACAATTTTTAGGCCGAAAAATCGATTTTCCAGCAGTTTCTACCTTAACAATCTCTTCCAATTGCCCATTTTCCCGAATTTCCTCCAATTTTTGGTTGGTATAAGCGGTTAAATCCAAAAACGCCTCATCCACAGACGCCTTCTCCACAATTATCGTCGAGTCGAAATTGTTGAGCACTCGGAACACTTCAGCACTGGCATCTCTGCGAAATTTAGCTTTTTTTATGGGTTTCAAGGCCTTAAACTTGATTTTCAAGCAATTTTTGGGCTCCGGAAGCTTCCAGAACCCCTAAAACAGCTTTTGGGCGATTTTGGACTTACAAATCGGATTTTTTGACAATTTTTGAGTTTTTAGGCATAATTATGAGAAAAACTTAGTTTTGGAAGGTATTTTCTRAAGATTTTCATTGAAAATTTGCATTTAAAAGGTTCCAAAATGTTCCAGAAGCGCTATATGCATTTTTTACATTTATACAGGCATTGTTCAGGGTTTCTGGCGACTTTTATGTTTTGGAAGCGTCTAGAAAGCTCCAGAACGACTTTTCAGCGGTTCTTCGGGCAGTTTTTGAGGATATTTATTGAAAAATTTGATTCTAAAATGTTCTAGATGCTCTATACAACGTTTAGAGAGCGTTTCTGGAAGCCTCCAGAAAGCTCCAGAAGCTTTTTTCAGCTTCAGAAGCTTCGAGATCCTCTAAAGCAGCTTTTGGCCGGATTTTTATGGAAAAATTGGTTTTAAACCGTTCCGGAATGCTCTAGAATGAATTTTTGAATCCGAATTATACTTCTCTAAAACAGCTTTTGGCCGGTTTTTATGCCATTTTTATTGAAAAATTGCTTCAAGAATGTTCTAGAAGCGGTATCTATGATTTTTGGTGTTTTTTAGGTTCTGGAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>284 282 146 121 98 69</canonical_bands>
                <polymorphic_bands>351 284 146 121 98</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTGCGAAATTTAGCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTCTGGAACATTTTGGAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTCTGCGAAATTTAGCTTTTTTTATGGGTTTCAAGGCCTTAAACTTGATTTTCAAGCAATTTTTGGGCTCCGGAAGCTTCCAGAACCCCTAAAACAGCTTTTGGGCGATTTTGGACTTACAAATCGGATTTTTTGACAATTTTTGAGTTTTTAGGCATAATTATGAGAAAAACTTAGTTTTGGAAGGTATTTTCTGAAGATTTTCATTGAAAATTTGCATTTAAAAGGTTCCAAAATGTTCCAGAAG</canonical_amplicon>
		<polymorphic_amplicon>CTCTGCGAAATTTAGCTTTTTTTATGGGTTTCAAGGCCTTAAACTTGATTTTCAAGCAATTTTTGGGCTCCGGAAGCTTCCAGAACCCCTAAAACAGCTTTTGGGCGATTTTGGACTTACAAATCGGATTTTTTGACAATTTTTGAGTTTTTAGGCATAATTATGAGAAAAACTTAGTTTTGGAAGGTATTTTCTRAAGATTTTCATTGAAAATTTGCATTTAAAAGGTTCCAAAATGTTCCAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38201</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>270873</contig_pos>
        <strand>+</strand>
        <context>GAAAATTTGC[A/T]TTTAAAAKGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAACTTAGTTTTGGAAGGTATTTTCTGAAGATTTTCATTGAAAATTTGC</left_flank>
        <right_flank>TTTAAAAGGTTCCAAAATGTTCCAGAAGCGCTATATGCATTTTTTACATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAAAACTCATTTTTCAGCGATTCTTAACCTAAAATAAACAATTTTTCAACAATTTTTAGGCCAAAAAACTTATTTTTCCACAATTTTTAGGCCGAAAAATCGATTTTCCAGCAGTTTCTACCTTAACAATCTCTTCCAATTGCCCATTTTCCCGAATTTCCTCCAATTTTTGGTTGGTATAAGCGGTTAAATCCAAAAACGCCTCATCCACAGACGCCTTCTCCACAATTATCGTCGAGTCGAAATTGTTGAGCACTCGGAACACTTCAGCACTGGCATCTCTGCGAAATTTAGCTTTTTTTATGGGTTTCAAGGCCTTAAACTTGATTTTCAAGCAATTTTTGGGCTCCGGAAGCTTCCAGAACCCCTAAAACAGCTTTTGGGCGATTTTGGACTTACAAATCGGATTTTTTGACAATTTTTGAGTTTTTAGGCATAATTATGAGAAAAACTTAGTTTTGGAAGGTATTTTCTGAAGATTTTCATTGAAAATTTGCATTTAAAAGGTTCCAAAATGTTCCAGAAGCGCTATATGCATTTTTTACATTTATACAGGCATTGTTCAGGGTTTCTGGCGACTTTTATGTTTTGGAAGCGTCTAGAAAGCTCCAGAACGACTTTTCAGCGGTTCTTCGGGCAGTTTTTGAGGATATTTATTGAAAAATTTGATTCTAAAATGTTCTAGATGCTCTATACAACGTTTAGAGAGCGTTTCTGGAAGCCTCCAGAAAGCTCCAGAAGCTTTTTTCAGCTTCAGAAGCTTCGAGATCCTCTAAAGCAGCTTTTGGCCGGATTTTTATGGAAAAATTGGTTTTAAACCGTTCCGGAATGCTCTAGAATGAATTTTTGAATCCGAATTATACTTCTCTAAAACAGCTTTTGGCCGGTTTTTATGCCATTTTTATTGAAAAATTGCTTCAAGAATGTTCTAGAAGCGGTATCTATGATTTTTGGTGTTTTTTAGGTTCTGGAAGCTTCTAGGAAGCTCCATGAGCATT</canonical>
            <polymorphic>CAAAAAACTCATTTTTCAGCGATTCTTAACCTAAAATAAACAATTTTTCAACAATTTTTAGGCCAAAAAACTTATTTTTCCACAATTTTTAGGCCGAAAAATCGATTTTCCAGCAGTTTCTACCTTAACAATCTCTTCCAATTGCCCATTTTCCCGAATTTCCTCCAATTTTTGGTTGGTATAAGCGGTTAAATCCAAAAACGCCTCATCCACAGACGCCTTCTCCACAATTATCGTCGAGTCGAAATTGTTGAGCACTCGGAACACTTCAGCACTGGCATCTCTGCGAAATTTAGCTTTTTTTATGGGTTTCAAGGCCTTAAACTTGATTTTCAAGCAATTTTTGGGCTCCGGAAGCTTCCAGAACCCCTAAAACAGCTTTTGGGCGATTTTGGACTTACAAATCGGATTTTTTGACAATTTTTGAGTTTTTAGGCATAATTATGAGAAAAACTTAGTTTTGGAAGGTATTTTCTGAAGATTTTCATTGAAAATTTGCWTTTAAAAGGTTCCAAAATGTTCCAGAAGCGCTATATGCATTTTTTACATTTATACAGGCATTGTTCAGGGTTTCTGGCGACTTTTATGTTTTGGAAGCGTCTAGAAAGCTCCAGAACGACTTTTCAGCGGTTCTTCGGGCAGTTTTTGAGGATATTTATTGAAAAATTTGATTCTAAAATGTTCTAGATGCTCTATACAACGTTTAGAGAGCGTTTCTGGAAGCCTCCAGAAAGCTCCAGAAGCTTTTTTCAGCTTCAGAAGCTTCGAGATCCTCTAAAGCAGCTTTTGGCCGGATTTTTATGGAAAAATTGGTTTTAAACCGTTCCGGAATGCTCTAGAATGAATTTTTGAATCCGAATTATACTTCTCTAAAACAGCTTTTGGCCGGTTTTTATGCCATTTTTATTGAAAAATTGCTTCAAGAATGTTCTAGAAGCGGTATCTATGATTTTTGGTGTTTTTTAGGTTCTGGAAGCTTCTAGGAAGCTCCATGAGCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>498 463 39</canonical_bands>
                <polymorphic_bands>537 463</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGACAATTTTTGAGTTTTTAGG</pcr_primer_p1>
		<pcr_primer_p2>GTTTAAAACCAATTTTTCCATAA</pcr_primer_p2>
		<pcr_amplicon_size>408</pcr_amplicon_size>
		<canonical_amplicon>TTGACAATTTTTGAGTTTTTAGGCATAATTATGAGAAAAACTTAGTTTTGGAAGGTATTTTCTGAAGATTTTCATTGAAAATTTGCATTTAAAAGGTTCCAAAATGTTCCAGAAGCGCTATATGCATTTTTTACATTTATACAGGCATTGTTCAGGGTTTCTGGCGACTTTTATGTTTTGGAAGCGTCTAGAAAGCTCCAGAACGACTTTTCAGCGGTTCTTCGGGCAGTTTTTGAGGATATTTATTGAAAAATTTGATTCTAAAATGTTCTAGATGCTCTATACAACGTTTAGAGAGCGTTTCTGGAAGCCTCCAGAAAGCTCCAGAAGCTTTTTTCAGCTTCAGAAGCTTCGAGATCCTCTAAAGCAGCTTTTGGCCGGATTTTTATGGAAAAATTGGTTTTAAAC</canonical_amplicon>
		<polymorphic_amplicon>TTGACAATTTTTGAGTTTTTAGGCATAATTATGAGAAAAACTTAGTTTTGGAAGGTATTTTCTGAAGATTTTCATTGAAAATTTGCWTTTAAAAGGTTCCAAAATGTTCCAGAAGCGCTATATGCATTTTTTACATTTATACAGGCATTGTTCAGGGTTTCTGGCGACTTTTATGTTTTGGAAGCGTCTAGAAAGCTCCAGAACGACTTTTCAGCGGTTCTTCGGGCAGTTTTTGAGGATATTTATTGAAAAATTTGATTCTAAAATGTTCTAGATGCTCTATACAACGTTTAGAGAGCGTTTCTGGAAGCCTCCAGAAAGCTCCAGAAGCTTTTTTCAGCTTCAGAAGCTTCGAGATCCTCTAAAGCAGCTTTTGGCCGGATTTTTATGGAAAAATTGGTTTTAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38202</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>271379</contig_pos>
        <strand></strand>
        <context>gcattttttc[G/A]gcttcagaag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTGTTTTTTAGGTTCTGGAAGCTTCTAGGAAGCTCCATGAGCATTTTTTC</left_flank>
        <right_flank>GCTTCAGAAGCTTCTAGAGCTTCTGAAACAGCTTTTTAAGCCATTTTTAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGTTCCAAAATGTTCCAGAAGCGCTATATGCATTTTTTACATTTATACAGGCATTGTTCAGGGTTTCTGGCGACTTTTATGTTTTGGAAGCGTCTAGAAAGCTCCAGAACGACTTTTCAGCGGTTCTTCGGGCAGTTTTTGAGGATATTTATTGAAAAATTTGATTCTAAAATGTTCTAGATGCTCTATACAACGTTTAGAGAGCGTTTCTGGAAGCCTCCAGAAAGCTCCAGAAGCTTTTTTCAGCTTCAGAAGCTTCGAGATCCTCTAAAGCAGCTTTTGGCCGGATTTTTATGGAAAAATTGGTTTTAAACCGTTCCGGAATGCTCTAGAATGAATTTTTGAATCCGAATTATACTTCTCTAAAACAGCTTTTGGCCGGTTTTTATGCCATTTTTATTGAAAAATTGCTTCAAGAATGTTCTAGAAGCGGTATCTATGATTTTTGGTGTTTTTTAGGTTCTGGAAGCTTCTAGGAAGCTCCATGAGCATTTTTTCGGCTTCAGAAGCTTCTAGAGCTTCTGAAACAGCTTTTTAAGCCATTTTTAAGGACTTTTTAATGGTAAATTTGCTTCTAGAATGGTCTAGAAGCGCTATACAAACTTTAAAAGTCAAATTATACTTTTAAAGGCATTTTTCGAGGTATCTCTCAATTTCTAGGATTTTGAGCTTCTGGAAGCTTCTAGACAGCTCCAGAAAGCTCCAGAATTTTCCCAGCACCCCACACACCGATATTTTTGAATATCCGCCTTGTCTGCATACTCTCCAATCGGTACATGGCAAATATTCAGGTGTGGACACTTGATTTTGGCATCGGCAACCGACATTCCACGCTTTACACCGAATGGACGGGCTTCATAGCTGACTGCGAGGATTCTAGAAGATTCCAGAACAATTTTTCAGCAAAATTTCCAGCCATTTTCTTACCCACCCTCGACTCCCTGCCGCGAATGTTGCACTACAATCACCGGCTGACCCCATAATTCGGGTTTATCCCGC</canonical>
            <polymorphic>AGGTTCCAAAATGTTCCAGAAGCGCTATATGCATTTTTTACATTTATACAGGCATTGTTCAGGGTTTCTGGCGACTTTTATGTTTTGGAAGCGTCTAGAAAGCTCCAGAACGACTTTTCAGCGGTTCTTCGGGCAGTTTTTGAGGATATTTATTGAAAAATTTGATTCTAAAATGTTCTAGATGCTCTATACAACGTTTAGAGAGCGTTTCTGGAAGCCTCCAGAAAGCTCCAGAAGCTTTTTTCAGCTTCAGAAGCTTCGAGATCCTCTAAAGCAGCTTTTGGCCGGATTTTTATGGAAAAATTGGTTTTAAACCGTTCCGGAATGCTCTAGAATGAATTTTTGAATCCGAATTATACTTCTCTAAAACAGCTTTTGGCCGGTTTTTATGCCATTTTTATTGAAAAATTGCTTCAAGAATGTTCTAGAAGCGGTATCTATGATTTTTGGTGTTTTTTAGGTTCTGGAAGCTTCTAGGAAGCTCCATGAGCATTTTTTCRGCTTCAGAAGCTTCTAGAGCTTCTGAAACAGCTTTTTAAGCCATTTTTAAGGACTTTTTAATGGTAAATTTGCTTCTAGAATGGTCTAGAAGCGCTATACAAACTTTAAAAGTCAAATTATACTTTTAAAGGCATTTTTCGAGGTATCTCTCAATTTCTAGGATTTTGAGCTTCTGGAAGCTTCTAGACAGCTCCAGAAAGCTCCAGAATTTTCCCAGCACCCCACACACCGATATTTTTGAATATCCGCCTTGTCTGCATACTCTCCAATCGGTACATGGCAAATATTCAGGTGTGGACACTTGATTTTGGCATCGGCAACCGACATTCCACGCTTTACACCGAATGGACGGGCTTCATAGCTGACTGCGAGGATTCTAGAAGATTCCAGAACAATTTTTCAGCAAAATTTCCAGCCATTTTCTTACCCACCCTCGACTCCCTGCCGCGAATGTTGCACTACAATCACCGGCTGACCCCATAATTCGGGTTTATCCCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>153 130 115 102 91 88 56 54 28 21 20 12 11 11 11 10 10 10 9 9 9 9 9 8 7 7</canonical_bands>
                <polymorphic_bands>153 130 115 102 91 88 56 54 29 28 21 12 11 11 11 10 10 10 9 9 9 9 8 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAATTTTTGAATCCGAATTAT</pcr_primer_p1>
		<pcr_primer_p2>CATTCTAGAAGCAAATTTACCAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGAATTTTTGAATCCGAATTATACTTCTCTAAAACAGCTTTTGGCCGGTTTTTATGCCATTTTTATTGAAAAATTGCTTCAAGAATGTTCTAGAAGCGGTATCTATGATTTTTGGTGTTTTTTAGGTTCTGGAAGCTTCTAGGAAGCTCCATGAGCATTTTTTCGGCTTCAGAAGCTTCTAGAGCTTCTGAAACAGCTTTTTAAGCCATTTTTAAGGACTTTTTAATGGTAAATTTGCTTCTAGAATG</canonical_amplicon>
		<polymorphic_amplicon>ATGAATTTTTGAATCCGAATTATACTTCTCTAAAACAGCTTTTGGCCGGTTTTTATGCCATTTTTATTGAAAAATTGCTTCAAGAATGTTCTAGAAGCGGTATCTATGATTTTTGGTGTTTTTTAGGTTCTGGAAGCTTCTAGGAAGCTCCATGAGCATTTTTTCRGCTTCAGAAGCTTCTAGAGCTTCTGAAACAGCTTTTTAAGCCATTTTTAAGGACTTTTTAATGGTAAATTTGCTTCTAGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38203</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>278574</contig_pos>
        <strand></strand>
        <context>ctcaaaagAC[A/G]TCGAACTGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCTGGACGGTTCTGGAAGTTTCTAGAGTCTTCTGAAGCTCTCAAAAGAC</left_flank>
        <right_flank>TCGAACTGTTCCAGAAGCTACCTGGAAGAATAATCCAAACGCGGCGATTT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCTAATGTTCTAGAAAGTTCTAGAAGCGTCTAGATGACGTCAAAATGCATCTAAAGACGTCTAAACGCTGCCGGAAGGTTCTAGGAGACGTCAGAATCTTCAGGAAGCGTCTGAATGGTTCTAGAGACATCTAGAAGATTCCGGAAGCTCTTAGAAGATGAAAATGCAGAACGACGGTTGTAGAAGCCTCCAGATGGGTTTGAACTGCTCTAGAGCCTTCTGGGAGCTTCAGACAAAAGCAAATATCTCCAGAAGACGTCTGACGGCTATATAAGGCTTCAGAAGCTTCCAGAAGACGTCAACATGCGCCTGGACGGTTCTGGAAGTTTCTAGATGGGTTTTGATTGTTCCAGAGCCTTCTGGGACATTCAGACGACGTCAAATCTCTTCAGAAGATGTCTGACGGCTATATAAAGCTTCAGAAGCTTCCAGAAGACGTCAACATGCGCCTGGACGGTTCTGGAAGTTTCTAGAGTCTTCTGAAGCTCTCAAAAGACATCGAACTGTTCCAGAAGCTACCTGGAAGAATAATCCAAACGCGGCGATTTCCATCAAACTTGGCTTATCAGTGATAGCCGTCAGCTTTTGATCGGGTTTCAGTGATTCGGGCTTCTGCGCTCCATCGTAAATGTCCATGACGAGACCAATGAATCTGAAAAAAATAAACGGGAATTTCTAGTCATTTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATTTTTAGTGATTTTACGCCCTTTTCAGCCTAATTTCGAATTTTGACTATTTTTCGCTCATTTAGGACCAAATTCTAATGATTTCAACTTATTTTCAGCTATTTTCAGACGATTTTAGACCATT</canonical>
            <polymorphic>TATCTAATGTTCTAGAAAGTTCTAGAAGCGTCTAGATGACGTCAAAATGCATCTAAAGACGTCTAAACGCTGCCGGAAGGTTCTAGGAGACGTCAGAATCTTCAGGAAGCGTCTGAATGGTTCTAGAGACATCTAGAAGATTCCGGAAGCTCTTAGAAGATGAAAATGCAGAACGACGGTTGTAGAAGCCTCCAGATGGGTTTGAACTGCTCTAGAGCCTTCTGGGAGCTTCAGACAAAAGCAAATATCTCCAGAAGACGTCTGACGGCTATATAAGGCTTCAGAAGCTTCCAGAAGACGTCAACATGCGCCTGGACGGTTCTGGAAGTTTCTAGATGGGTTTTGATTGTTCCAGAGCCTTCTGGGACATTCAGACGACGTCAAATCTCTTCAGAAGATGTCTGACGGCTATATAAAGCTTCAGAAGCTTCCAGAAGACGTCAACATGCGCCTGGACGGTTCTGGAAGTTTCTAGAGTCTTCTGAAGCTCTCAAAAGACRTCGAACTGTTCCAGAAGCTACCTGGAAGAATAATCCAAACGCGGCGATTTCCATCAAACTTGGCTTATCAGTGATAGCCGTCAGCTTTTGATCGGGTTTCAGTGATTCGGGCTTCTGCGCTCCATCGTAAATGTCCATGACGAGACCAATGAATCTGAAAAAAATAAACGGGAATTTCTAGTCATTTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATTTTTAGTGATTTTACGCCCTTTTCAGCCTAATTTCGAATTTTGACTATTTTTCGCTCATTTAGGACCAAATTCTAATGATTTCAACTTATTTTCAGCTATTTTCAGACGATTTTAGACCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTTCTAGATGGGTTTTGATT</pcr_primer_p1>
		<pcr_primer_p2>TCACTGATAAGCCAAGTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGTTTCTAGATGGGTTTTGATTGTTCCAGAGCCTTCTGGGACATTCAGACGACGTCAAATCTCTTCAGAAGATGTCTGACGGCTATATAAAGCTTCAGAAGCTTCCAGAAGACGTCAACATGCGCCTGGACGGTTCTGGAAGTTTCTAGAGTCTTCTGAAGCTCTCAAAAGACATCGAACTGTTCCAGAAGCTACCTGGAAGAATAATCCAAACGCGGCGATTTCCATCAAACTTGGCTTATCAGTGA</canonical_amplicon>
		<polymorphic_amplicon>AAGTTTCTAGATGGGTTTTGATTGTTCCAGAGCCTTCTGGGACATTCAGACGACGTCAAATCTCTTCAGAAGATGTCTGACGGCTATATAAAGCTTCAGAAGCTTCCAGAAGACGTCAACATGCGCCTGGACGGTTCTGGAAGTTTCTAGAGTCTTCTGAAGCTCTCAAAAGACRTCGAACTGTTCCAGAAGCTACCTGGAAGAATAATCCAAACGCGGCGATTTCCATCAAACTTGGCTTATCAGTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38204</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>278826</contig_pos>
        <strand></strand>
        <context>GTTTGTTTTG[G/C]AATCattttg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTG</left_flank>
        <right_flank>AATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAGACGTCTGACGGCTATATAAGGCTTCAGAAGCTTCCAGAAGACGTCAACATGCGCCTGGACGGTTCTGGAAGTTTCTAGATGGGTTTTGATTGTTCCAGAGCCTTCTGGGACATTCAGACGACGTCAAATCTCTTCAGAAGATGTCTGACGGCTATATAAAGCTTCAGAAGCTTCCAGAAGACGTCAACATGCGCCTGGACGGTTCTGGAAGTTTCTAGAGTCTTCTGAAGCTCTCAAAAGACATCGAACTGTTCCAGAAGCTACCTGGAAGAATAATCCAAACGCGGCGATTTCCATCAAACTTGGCTTATCAGTGATAGCCGTCAGCTTTTGATCGGGTTTCAGTGATTCGGGCTTCTGCGCTCCATCGTAAATGTCCATGACGAGACCAATGAATCTGAAAAAAATAAACGGGAATTTCTAGTCATTTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATTTTTAGTGATTTTACGCCCTTTTCAGCCTAATTTCGAATTTTGACTATTTTTCGCTCATTTAGGACCAAATTCTAATGATTTCAACTTATTTTCAGCTATTTTCAGACGATTTTAGACCATTTTAAGCCTAAATCTGACTTCTTAGGACCATTCATTACCAACTTTCAATAATTTTAGGCAATTTAAAGCTATTTTTCAGCTATTTTCAGCCACTTTACGACCATTTATAAGCAAATATCTGTATTTTAAGGACTTTTTTCCAGTGAAAGAATCCAGATAGATTCGAAAATGGCGACATTTTTTTGAGCCGTTTCTAGTGGAATTTTAGCCGCTTTAAAAGTTTTTTAAAGCCATTTTTGGGCTGTTTAGGACA</canonical>
            <polymorphic>AGAAGACGTCTGACGGCTATATAAGGCTTCAGAAGCTTCCAGAAGACGTCAACATGCGCCTGGACGGTTCTGGAAGTTTCTAGATGGGTTTTGATTGTTCCAGAGCCTTCTGGGACATTCAGACGACGTCAAATCTCTTCAGAAGATGTCTGACGGCTATATAAAGCTTCAGAAGCTTCCAGAAGACGTCAACATGCGCCTGGACGGTTCTGGAAGTTTCTAGAGTCTTCTGAAGCTCTCAAAAGACATCGAACTGTTCCAGAAGCTACCTGGAAGAATAATCCAAACGCGGCGATTTCCATCAAACTTGGCTTATCAGTGATAGCCGTCAGCTTTTGATCGGGTTTCAGTGATTCGGGCTTCTGCGCTCCATCGTAAATGTCCATGACGAGACCAATGAATCTGAAAAAAATAAACGGGAATTTCTAGTCATTTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGSAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATTTTTAGTGATTTTACGCCCTTTTCAGCCTAATTTCGAATTTTGACTATTTTTCGCTCATTTAGGACCAAATTCTAATGATTTCAACTTATTTTCAGCTATTTTCAGACGATTTTAGACCATTTTAAGCCTAAATCTGACTTCTTAGGACCATTCATTACCAACTTTCAATAATTTTAGGCAATTTAAAGCTATTTTTCAGCTATTTTCAGCCACTTTACGACCATTTATAAGCAAATATCTGTATTTTAAGGACTTTTTTCCAGTGAAAGAATCCAGATAGATTCGAAAATGGCGACATTTTTTTGAGCCGTTTCTAGTGGAATTTTAGCCGCTTTAAAAGTTTTTTAAAGCCATTTTTGGGCTGTTTAGGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>298 223 129 101 98 93 47 11</canonical_bands>
                <polymorphic_bands>298 223 199 129 93 47 11</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>352 298 101 98 93 47 11</canonical_bands>
                <polymorphic_bands>352 298 199 93 47 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGACGATTTTAAGCTATTT</pcr_primer_p1>
		<pcr_primer_p2>CTCTTAGGTAGGGGAGAATAGG</pcr_primer_p2>
		<pcr_amplicon_size>843</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGSAATCATTTTGAGCCGTTTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38205</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>278848</contig_pos>
        <strand></strand>
        <context>gccgttttta[G/A]rctaattttg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTA</left_flank>
        <right_flank>GCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGGCTTCAGAAGCTTCCAGAAGACGTCAACATGCGCCTGGACGGTTCTGGAAGTTTCTAGATGGGTTTTGATTGTTCCAGAGCCTTCTGGGACATTCAGACGACGTCAAATCTCTTCAGAAGATGTCTGACGGCTATATAAAGCTTCAGAAGCTTCCAGAAGACGTCAACATGCGCCTGGACGGTTCTGGAAGTTTCTAGAGTCTTCTGAAGCTCTCAAAAGACATCGAACTGTTCCAGAAGCTACCTGGAAGAATAATCCAAACGCGGCGATTTCCATCAAACTTGGCTTATCAGTGATAGCCGTCAGCTTTTGATCGGGTTTCAGTGATTCGGGCTTCTGCGCTCCATCGTAAATGTCCATGACGAGACCAATGAATCTGAAAAAAATAAACGGGAATTTCTAGTCATTTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATTTTTAGTGATTTTACGCCCTTTTCAGCCTAATTTCGAATTTTGACTATTTTTCGCTCATTTAGGACCAAATTCTAATGATTTCAACTTATTTTCAGCTATTTTCAGACGATTTTAGACCATTTTAAGCCTAAATCTGACTTCTTAGGACCATTCATTACCAACTTTCAATAATTTTAGGCAATTTAAAGCTATTTTTCAGCTATTTTCAGCCACTTTACGACCATTTATAAGCAAATATCTGTATTTTAAGGACTTTTTTCCAGTGAAAGAATCCAGATAGATTCGAAAATGGCGACATTTTTTTGAGCCGTTTCTAGTGGAATTTTAGCCGCTTTAAAAGTTTTTTAAAGCCATTTTTGGGCTGTTTAGGACAAAAAATTCAAGAATTTTGGTCA</canonical>
            <polymorphic>AAGGCTTCAGAAGCTTCCAGAAGACGTCAACATGCGCCTGGACGGTTCTGGAAGTTTCTAGATGGGTTTTGATTGTTCCAGAGCCTTCTGGGACATTCAGACGACGTCAAATCTCTTCAGAAGATGTCTGACGGCTATATAAAGCTTCAGAAGCTTCCAGAAGACGTCAACATGCGCCTGGACGGTTCTGGAAGTTTCTAGAGTCTTCTGAAGCTCTCAAAAGACATCGAACTGTTCCAGAAGCTACCTGGAAGAATAATCCAAACGCGGCGATTTCCATCAAACTTGGCTTATCAGTGATAGCCGTCAGCTTTTGATCGGGTTTCAGTGATTCGGGCTTCTGCGCTCCATCGTAAATGTCCATGACGAGACCAATGAATCTGAAAAAAATAAACGGGAATTTCTAGTCATTTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTARGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATTTTTAGTGATTTTACGCCCTTTTCAGCCTAATTTCGAATTTTGACTATTTTTCGCTCATTTAGGACCAAATTCTAATGATTTCAACTTATTTTCAGCTATTTTCAGACGATTTTAGACCATTTTAAGCCTAAATCTGACTTCTTAGGACCATTCATTACCAACTTTCAATAATTTTAGGCAATTTAAAGCTATTTTTCAGCTATTTTCAGCCACTTTACGACCATTTATAAGCAAATATCTGTATTTTAAGGACTTTTTTCCAGTGAAAGAATCCAGATAGATTCGAAAATGGCGACATTTTTTTGAGCCGTTTCTAGTGGAATTTTAGCCGCTTTAAAAGTTTTTTAAAGCCATTTTTGGGCTGTTTAGGACAAAAAATTCAAGAATTTTGGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>497 465 38</canonical_bands>
                <polymorphic_bands>962 38</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>98 91 70 70 62 62 60 51 46 34 33 31 31 30 27 22 22 22 21 21 14 11 11 11 10 10 9 9 7 4</canonical_bands>
                <polymorphic_bands>98 91 70 70 62 62 60 51 46 34 33 33 31 31 30 27 22 22 21 21 14 11 11 10 10 9 9 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGACGATTTTAAGCTATTT</pcr_primer_p1>
		<pcr_primer_p2>CTCTTAGGTAGGGGAGAATAGG</pcr_primer_p2>
		<pcr_amplicon_size>843</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTARGCTAATTTTGAGGCATTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38206</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>278849</contig_pos>
        <strand></strand>
        <context>ccgtttttar[G/A]ctaattttga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAG</left_flank>
        <right_flank>CTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGCTTCAGAAGCTTCCAGAAGACGTCAACATGCGCCTGGACGGTTCTGGAAGTTTCTAGATGGGTTTTGATTGTTCCAGAGCCTTCTGGGACATTCAGACGACGTCAAATCTCTTCAGAAGATGTCTGACGGCTATATAAAGCTTCAGAAGCTTCCAGAAGACGTCAACATGCGCCTGGACGGTTCTGGAAGTTTCTAGAGTCTTCTGAAGCTCTCAAAAGACATCGAACTGTTCCAGAAGCTACCTGGAAGAATAATCCAAACGCGGCGATTTCCATCAAACTTGGCTTATCAGTGATAGCCGTCAGCTTTTGATCGGGTTTCAGTGATTCGGGCTTCTGCGCTCCATCGTAAATGTCCATGACGAGACCAATGAATCTGAAAAAAATAAACGGGAATTTCTAGTCATTTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATTTTTAGTGATTTTACGCCCTTTTCAGCCTAATTTCGAATTTTGACTATTTTTCGCTCATTTAGGACCAAATTCTAATGATTTCAACTTATTTTCAGCTATTTTCAGACGATTTTAGACCATTTTAAGCCTAAATCTGACTTCTTAGGACCATTCATTACCAACTTTCAATAATTTTAGGCAATTTAAAGCTATTTTTCAGCTATTTTCAGCCACTTTACGACCATTTATAAGCAAATATCTGTATTTTAAGGACTTTTTTCCAGTGAAAGAATCCAGATAGATTCGAAAATGGCGACATTTTTTTGAGCCGTTTCTAGTGGAATTTTAGCCGCTTTAAAAGTTTTTTAAAGCCATTTTTGGGCTGTTTAGGACAAAAAATTCAAGAATTTTGGTCAA</canonical>
            <polymorphic>AGGCTTCAGAAGCTTCCAGAAGACGTCAACATGCGCCTGGACGGTTCTGGAAGTTTCTAGATGGGTTTTGATTGTTCCAGAGCCTTCTGGGACATTCAGACGACGTCAAATCTCTTCAGAAGATGTCTGACGGCTATATAAAGCTTCAGAAGCTTCCAGAAGACGTCAACATGCGCCTGGACGGTTCTGGAAGTTTCTAGAGTCTTCTGAAGCTCTCAAAAGACATCGAACTGTTCCAGAAGCTACCTGGAAGAATAATCCAAACGCGGCGATTTCCATCAAACTTGGCTTATCAGTGATAGCCGTCAGCTTTTGATCGGGTTTCAGTGATTCGGGCTTCTGCGCTCCATCGTAAATGTCCATGACGAGACCAATGAATCTGAAAAAAATAAACGGGAATTTCTAGTCATTTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGRCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATTTTTAGTGATTTTACGCCCTTTTCAGCCTAATTTCGAATTTTGACTATTTTTCGCTCATTTAGGACCAAATTCTAATGATTTCAACTTATTTTCAGCTATTTTCAGACGATTTTAGACCATTTTAAGCCTAAATCTGACTTCTTAGGACCATTCATTACCAACTTTCAATAATTTTAGGCAATTTAAAGCTATTTTTCAGCTATTTTCAGCCACTTTACGACCATTTATAAGCAAATATCTGTATTTTAAGGACTTTTTTCCAGTGAAAGAATCCAGATAGATTCGAAAATGGCGACATTTTTTTGAGCCGTTTCTAGTGGAATTTTAGCCGCTTTAAAAGTTTTTTAAAGCCATTTTTGGGCTGTTTAGGACAAAAAATTCAAGAATTTTGGTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>496 465 39</canonical_bands>
                <polymorphic_bands>961 39</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>98 91 70 70 62 62 60 51 46 35 33 31 31 30 27 22 22 22 21 21 14 11 11 11 10 10 9 9 7 3</canonical_bands>
                <polymorphic_bands>98 91 70 70 62 62 60 51 46 35 33 33 31 31 30 27 22 22 21 21 14 11 11 10 10 9 9 7 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGACGATTTTAAGCTATTT</pcr_primer_p1>
		<pcr_primer_p2>CTCTTAGGTAGGGGAGAATAGG</pcr_primer_p2>
		<pcr_amplicon_size>843</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGRCTAATTTTGAGGCATTTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38207</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>278870</contig_pos>
        <strand></strand>
        <context>ggcatttcaa[A/C]gcygttttaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAA</left_flank>
        <right_flank>GCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACGTCAACATGCGCCTGGACGGTTCTGGAAGTTTCTAGATGGGTTTTGATTGTTCCAGAGCCTTCTGGGACATTCAGACGACGTCAAATCTCTTCAGAAGATGTCTGACGGCTATATAAAGCTTCAGAAGCTTCCAGAAGACGTCAACATGCGCCTGGACGGTTCTGGAAGTTTCTAGAGTCTTCTGAAGCTCTCAAAAGACATCGAACTGTTCCAGAAGCTACCTGGAAGAATAATCCAAACGCGGCGATTTCCATCAAACTTGGCTTATCAGTGATAGCCGTCAGCTTTTGATCGGGTTTCAGTGATTCGGGCTTCTGCGCTCCATCGTAAATGTCCATGACGAGACCAATGAATCTGAAAAAAATAAACGGGAATTTCTAGTCATTTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATTTTTAGTGATTTTACGCCCTTTTCAGCCTAATTTCGAATTTTGACTATTTTTCGCTCATTTAGGACCAAATTCTAATGATTTCAACTTATTTTCAGCTATTTTCAGACGATTTTAGACCATTTTAAGCCTAAATCTGACTTCTTAGGACCATTCATTACCAACTTTCAATAATTTTAGGCAATTTAAAGCTATTTTTCAGCTATTTTCAGCCACTTTACGACCATTTATAAGCAAATATCTGTATTTTAAGGACTTTTTTCCAGTGAAAGAATCCAGATAGATTCGAAAATGGCGACATTTTTTTGAGCCGTTTCTAGTGGAATTTTAGCCGCTTTAAAAGTTTTTTAAAGCCATTTTTGGGCTGTTTAGGACAAAAAATTCAAGAATTTTGGTCAATTTTCAGCCACTTTTTGATTA</canonical>
            <polymorphic>GACGTCAACATGCGCCTGGACGGTTCTGGAAGTTTCTAGATGGGTTTTGATTGTTCCAGAGCCTTCTGGGACATTCAGACGACGTCAAATCTCTTCAGAAGATGTCTGACGGCTATATAAAGCTTCAGAAGCTTCCAGAAGACGTCAACATGCGCCTGGACGGTTCTGGAAGTTTCTAGAGTCTTCTGAAGCTCTCAAAAGACATCGAACTGTTCCAGAAGCTACCTGGAAGAATAATCCAAACGCGGCGATTTCCATCAAACTTGGCTTATCAGTGATAGCCGTCAGCTTTTGATCGGGTTTCAGTGATTCGGGCTTCTGCGCTCCATCGTAAATGTCCATGACGAGACCAATGAATCTGAAAAAAATAAACGGGAATTTCTAGTCATTTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAMGCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATTTTTAGTGATTTTACGCCCTTTTCAGCCTAATTTCGAATTTTGACTATTTTTCGCTCATTTAGGACCAAATTCTAATGATTTCAACTTATTTTCAGCTATTTTCAGACGATTTTAGACCATTTTAAGCCTAAATCTGACTTCTTAGGACCATTCATTACCAACTTTCAATAATTTTAGGCAATTTAAAGCTATTTTTCAGCTATTTTCAGCCACTTTACGACCATTTATAAGCAAATATCTGTATTTTAAGGACTTTTTTCCAGTGAAAGAATCCAGATAGATTCGAAAATGGCGACATTTTTTTGAGCCGTTTCTAGTGGAATTTTAGCCGCTTTAAAAGTTTTTTAAAGCCATTTTTGGGCTGTTTAGGACAAAAAATTCAAGAATTTTGGTCAATTTTCAGCCACTTTTTGATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>218 134 122 118 95 93 67 60 43 30 11 9</canonical_bands>
                <polymorphic_bands>218 138 134 122 118 93 67 60 30 11 9</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>98 91 70 62 62 61 60 51 46 42 33 31 31 30 27 22 22 22 21 21 14 14 11 11 11 10 10 9 7</canonical_bands>
                <polymorphic_bands>98 91 70 62 62 61 60 51 46 43 42 33 31 31 30 27 22 22 21 14 14 11 11 11 10 10 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGACGATTTTAAGCTATTT</pcr_primer_p1>
		<pcr_primer_p2>CTCTTAGGTAGGGGAGAATAGG</pcr_primer_p2>
		<pcr_amplicon_size>843</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAMGCTGTTTTAAGGGCATTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38208</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>278873</contig_pos>
        <strand></strand>
        <context>atttcaamgc[T/C]gttttaargg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGC</left_flank>
        <right_flank>GTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCAACATGCGCCTGGACGGTTCTGGAAGTTTCTAGATGGGTTTTGATTGTTCCAGAGCCTTCTGGGACATTCAGACGACGTCAAATCTCTTCAGAAGATGTCTGACGGCTATATAAAGCTTCAGAAGCTTCCAGAAGACGTCAACATGCGCCTGGACGGTTCTGGAAGTTTCTAGAGTCTTCTGAAGCTCTCAAAAGACATCGAACTGTTCCAGAAGCTACCTGGAAGAATAATCCAAACGCGGCGATTTCCATCAAACTTGGCTTATCAGTGATAGCCGTCAGCTTTTGATCGGGTTTCAGTGATTCGGGCTTCTGCGCTCCATCGTAAATGTCCATGACGAGACCAATGAATCTGAAAAAAATAAACGGGAATTTCTAGTCATTTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATTTTTAGTGATTTTACGCCCTTTTCAGCCTAATTTCGAATTTTGACTATTTTTCGCTCATTTAGGACCAAATTCTAATGATTTCAACTTATTTTCAGCTATTTTCAGACGATTTTAGACCATTTTAAGCCTAAATCTGACTTCTTAGGACCATTCATTACCAACTTTCAATAATTTTAGGCAATTTAAAGCTATTTTTCAGCTATTTTCAGCCACTTTACGACCATTTATAAGCAAATATCTGTATTTTAAGGACTTTTTTCCAGTGAAAGAATCCAGATAGATTCGAAAATGGCGACATTTTTTTGAGCCGTTTCTAGTGGAATTTTAGCCGCTTTAAAAGTTTTTTAAAGCCATTTTTGGGCTGTTTAGGACAAAAAATTCAAGAATTTTGGTCAATTTTCAGCCACTTTTTGATTATTT</canonical>
            <polymorphic>GTCAACATGCGCCTGGACGGTTCTGGAAGTTTCTAGATGGGTTTTGATTGTTCCAGAGCCTTCTGGGACATTCAGACGACGTCAAATCTCTTCAGAAGATGTCTGACGGCTATATAAAGCTTCAGAAGCTTCCAGAAGACGTCAACATGCGCCTGGACGGTTCTGGAAGTTTCTAGAGTCTTCTGAAGCTCTCAAAAGACATCGAACTGTTCCAGAAGCTACCTGGAAGAATAATCCAAACGCGGCGATTTCCATCAAACTTGGCTTATCAGTGATAGCCGTCAGCTTTTGATCGGGTTTCAGTGATTCGGGCTTCTGCGCTCCATCGTAAATGTCCATGACGAGACCAATGAATCTGAAAAAAATAAACGGGAATTTCTAGTCATTTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCYGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATTTTTAGTGATTTTACGCCCTTTTCAGCCTAATTTCGAATTTTGACTATTTTTCGCTCATTTAGGACCAAATTCTAATGATTTCAACTTATTTTCAGCTATTTTCAGACGATTTTAGACCATTTTAAGCCTAAATCTGACTTCTTAGGACCATTCATTACCAACTTTCAATAATTTTAGGCAATTTAAAGCTATTTTTCAGCTATTTTCAGCCACTTTACGACCATTTATAAGCAAATATCTGTATTTTAAGGACTTTTTTCCAGTGAAAGAATCCAGATAGATTCGAAAATGGCGACATTTTTTTGAGCCGTTTCTAGTGGAATTTTAGCCGCTTTAAAAGTTTTTTAAAGCCATTTTTGGGCTGTTTAGGACAAAAAATTCAAGAATTTTGGTCAATTTTCAGCCACTTTTTGATTATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>221 134 119 118 95 93 67 60 43 30 11 9</canonical_bands>
                <polymorphic_bands>221 138 134 119 118 93 67 60 30 11 9</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>98 91 70 62 62 60 58 51 46 42 33 31 31 30 27 22 22 22 21 21 17 14 11 11 11 10 10 9 7</canonical_bands>
                <polymorphic_bands>98 91 70 62 62 60 58 51 46 43 42 33 31 31 30 27 22 22 21 17 14 11 11 11 10 10 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGACGATTTTAAGCTATTT</pcr_primer_p1>
		<pcr_primer_p2>CTCTTAGGTAGGGGAGAATAGG</pcr_primer_p2>
		<pcr_amplicon_size>843</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCYGTTTTAAGGGCATTTTCAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38209</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>278881</contig_pos>
        <strand></strand>
        <context>gcygttttaa[G/A]ggcattttca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAA</left_flank>
        <right_flank>GGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGCCTGGACGGTTCTGGAAGTTTCTAGATGGGTTTTGATTGTTCCAGAGCCTTCTGGGACATTCAGACGACGTCAAATCTCTTCAGAAGATGTCTGACGGCTATATAAAGCTTCAGAAGCTTCCAGAAGACGTCAACATGCGCCTGGACGGTTCTGGAAGTTTCTAGAGTCTTCTGAAGCTCTCAAAAGACATCGAACTGTTCCAGAAGCTACCTGGAAGAATAATCCAAACGCGGCGATTTCCATCAAACTTGGCTTATCAGTGATAGCCGTCAGCTTTTGATCGGGTTTCAGTGATTCGGGCTTCTGCGCTCCATCGTAAATGTCCATGACGAGACCAATGAATCTGAAAAAAATAAACGGGAATTTCTAGTCATTTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATTTTTAGTGATTTTACGCCCTTTTCAGCCTAATTTCGAATTTTGACTATTTTTCGCTCATTTAGGACCAAATTCTAATGATTTCAACTTATTTTCAGCTATTTTCAGACGATTTTAGACCATTTTAAGCCTAAATCTGACTTCTTAGGACCATTCATTACCAACTTTCAATAATTTTAGGCAATTTAAAGCTATTTTTCAGCTATTTTCAGCCACTTTACGACCATTTATAAGCAAATATCTGTATTTTAAGGACTTTTTTCCAGTGAAAGAATCCAGATAGATTCGAAAATGGCGACATTTTTTTGAGCCGTTTCTAGTGGAATTTTAGCCGCTTTAAAAGTTTTTTAAAGCCATTTTTGGGCTGTTTAGGACAAAAAATTCAAGAATTTTGGTCAATTTTCAGCCACTTTTTGATTATTTTTAGCCTA</canonical>
            <polymorphic>GCGCCTGGACGGTTCTGGAAGTTTCTAGATGGGTTTTGATTGTTCCAGAGCCTTCTGGGACATTCAGACGACGTCAAATCTCTTCAGAAGATGTCTGACGGCTATATAAAGCTTCAGAAGCTTCCAGAAGACGTCAACATGCGCCTGGACGGTTCTGGAAGTTTCTAGAGTCTTCTGAAGCTCTCAAAAGACATCGAACTGTTCCAGAAGCTACCTGGAAGAATAATCCAAACGCGGCGATTTCCATCAAACTTGGCTTATCAGTGATAGCCGTCAGCTTTTGATCGGGTTTCAGTGATTCGGGCTTCTGCGCTCCATCGTAAATGTCCATGACGAGACCAATGAATCTGAAAAAAATAAACGGGAATTTCTAGTCATTTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAARGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATTTTTAGTGATTTTACGCCCTTTTCAGCCTAATTTCGAATTTTGACTATTTTTCGCTCATTTAGGACCAAATTCTAATGATTTCAACTTATTTTCAGCTATTTTCAGACGATTTTAGACCATTTTAAGCCTAAATCTGACTTCTTAGGACCATTCATTACCAACTTTCAATAATTTTAGGCAATTTAAAGCTATTTTTCAGCTATTTTCAGCCACTTTACGACCATTTATAAGCAAATATCTGTATTTTAAGGACTTTTTTCCAGTGAAAGAATCCAGATAGATTCGAAAATGGCGACATTTTTTTGAGCCGTTTCTAGTGGAATTTTAGCCGCTTTAAAAGTTTTTTAAAGCCATTTTTGGGCTGTTTAGGACAAAAAATTCAAGAATTTTGGTCAATTTTCAGCCACTTTTTGATTATTTTTAGCCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGACGATTTTAAGCTATTT</pcr_primer_p1>
		<pcr_primer_p2>CTCTTAGGTAGGGGAGAATAGG</pcr_primer_p2>
		<pcr_amplicon_size>843</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAATTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAARGGCATTTTCAGCCAAAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38210</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>278932</contig_pos>
        <strand></strand>
        <context>ttgattcatt[C/T]ttagtctaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATT</left_flank>
        <right_flank>TTAGTCTAATTTTGGCCAATTTTTAGTGATTTTACGCCCTTTTCAGCCTA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCTGGGACATTCAGACGACGTCAAATCTCTTCAGAAGATGTCTGACGGCTATATAAAGCTTCAGAAGCTTCCAGAAGACGTCAACATGCGCCTGGACGGTTCTGGAAGTTTCTAGAGTCTTCTGAAGCTCTCAAAAGACATCGAACTGTTCCAGAAGCTACCTGGAAGAATAATCCAAACGCGGCGATTTCCATCAAACTTGGCTTATCAGTGATAGCCGTCAGCTTTTGATCGGGTTTCAGTGATTCGGGCTTCTGCGCTCCATCGTAAATGTCCATGACGAGACCAATGAATCTGAAAAAAATAAACGGGAATTTCTAGTCATTTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATTTTTAGTGATTTTACGCCCTTTTCAGCCTAATTTCGAATTTTGACTATTTTTCGCTCATTTAGGACCAAATTCTAATGATTTCAACTTATTTTCAGCTATTTTCAGACGATTTTAGACCATTTTAAGCCTAAATCTGACTTCTTAGGACCATTCATTACCAACTTTCAATAATTTTAGGCAATTTAAAGCTATTTTTCAGCTATTTTCAGCCACTTTACGACCATTTATAAGCAAATATCTGTATTTTAAGGACTTTTTTCCAGTGAAAGAATCCAGATAGATTCGAAAATGGCGACATTTTTTTGAGCCGTTTCTAGTGGAATTTTAGCCGCTTTAAAAGTTTTTTAAAGCCATTTTTGGGCTGTTTAGGACAAAAAATTCAAGAATTTTGGTCAATTTTCAGCCACTTTTTGATTATTTTTAGCCTAATTTTAGTCAATTTTCAGCTATTTTTGAGCATTTCCAGGTCATTTTCAGCA</canonical>
            <polymorphic>CTTCTGGGACATTCAGACGACGTCAAATCTCTTCAGAAGATGTCTGACGGCTATATAAAGCTTCAGAAGCTTCCAGAAGACGTCAACATGCGCCTGGACGGTTCTGGAAGTTTCTAGAGTCTTCTGAAGCTCTCAAAAGACATCGAACTGTTCCAGAAGCTACCTGGAAGAATAATCCAAACGCGGCGATTTCCATCAAACTTGGCTTATCAGTGATAGCCGTCAGCTTTTGATCGGGTTTCAGTGATTCGGGCTTCTGCGCTCCATCGTAAATGTCCATGACGAGACCAATGAATCTGAAAAAAATAAACGGGAATTTCTAGTCATTTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTYTTAGTCTAATTTTGGCCAATTTTTAGTGATTTTACGCCCTTTTCAGCCTAATTTCGAATTTTGACTATTTTTCGCTCATTTAGGACCAAATTCTAATGATTTCAACTTATTTTCAGCTATTTTCAGACGATTTTAGACCATTTTAAGCCTAAATCTGACTTCTTAGGACCATTCATTACCAACTTTCAATAATTTTAGGCAATTTAAAGCTATTTTTCAGCTATTTTCAGCCACTTTACGACCATTTATAAGCAAATATCTGTATTTTAAGGACTTTTTTCCAGTGAAAGAATCCAGATAGATTCGAAAATGGCGACATTTTTTTGAGCCGTTTCTAGTGGAATTTTAGCCGCTTTAAAAGTTTTTTAAAGCCATTTTTGGGCTGTTTAGGACAAAAAATTCAAGAATTTTGGTCAATTTTCAGCCACTTTTTGATTATTTTTAGCCTAATTTTAGTCAATTTTCAGCTATTTTTGAGCATTTCCAGGTCATTTTCAGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 338 162</canonical_bands>
                <polymorphic_bands>662 338</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGACGATTTTAAGCTATTT</pcr_primer_p1>
		<pcr_primer_p2>CTCTTAGGTAGGGGAGAATAGG</pcr_primer_p2>
		<pcr_amplicon_size>843</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTYTTAGTCTAATTTTGGCCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38211</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>278966</contig_pos>
        <strand></strand>
        <context>tagtgatttt[A/C]cgcccttttc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATTTTTAGTGATTTT</left_flank>
        <right_flank>CGCCCTTTTCAGCCTAATTTCGAATTTTGACTATTTTTCGCTCATTTAGG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAGATGTCTGACGGCTATATAAAGCTTCAGAAGCTTCCAGAAGACGTCAACATGCGCCTGGACGGTTCTGGAAGTTTCTAGAGTCTTCTGAAGCTCTCAAAAGACATCGAACTGTTCCAGAAGCTACCTGGAAGAATAATCCAAACGCGGCGATTTCCATCAAACTTGGCTTATCAGTGATAGCCGTCAGCTTTTGATCGGGTTTCAGTGATTCGGGCTTCTGCGCTCCATCGTAAATGTCCATGACGAGACCAATGAATCTGAAAAAAATAAACGGGAATTTCTAGTCATTTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATTTTTAGTGATTTTACGCCCTTTTCAGCCTAATTTCGAATTTTGACTATTTTTCGCTCATTTAGGACCAAATTCTAATGATTTCAACTTATTTTCAGCTATTTTCAGACGATTTTAGACCATTTTAAGCCTAAATCTGACTTCTTAGGACCATTCATTACCAACTTTCAATAATTTTAGGCAATTTAAAGCTATTTTTCAGCTATTTTCAGCCACTTTACGACCATTTATAAGCAAATATCTGTATTTTAAGGACTTTTTTCCAGTGAAAGAATCCAGATAGATTCGAAAATGGCGACATTTTTTTGAGCCGTTTCTAGTGGAATTTTAGCCGCTTTAAAAGTTTTTTAAAGCCATTTTTGGGCTGTTTAGGACAAAAAATTCAAGAATTTTGGTCAATTTTCAGCCACTTTTTGATTATTTTTAGCCTAATTTTAGTCAATTTTCAGCTATTTTTGAGCATTTCCAGGTCATTTTCAGCAATTTAAAAACGATTTTCAGCGATTTTGAGCCATT</canonical>
            <polymorphic>AGAAGATGTCTGACGGCTATATAAAGCTTCAGAAGCTTCCAGAAGACGTCAACATGCGCCTGGACGGTTCTGGAAGTTTCTAGAGTCTTCTGAAGCTCTCAAAAGACATCGAACTGTTCCAGAAGCTACCTGGAAGAATAATCCAAACGCGGCGATTTCCATCAAACTTGGCTTATCAGTGATAGCCGTCAGCTTTTGATCGGGTTTCAGTGATTCGGGCTTCTGCGCTCCATCGTAAATGTCCATGACGAGACCAATGAATCTGAAAAAAATAAACGGGAATTTCTAGTCATTTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATTTTTAGTGATTTTMCGCCCTTTTCAGCCTAATTTCGAATTTTGACTATTTTTCGCTCATTTAGGACCAAATTCTAATGATTTCAACTTATTTTCAGCTATTTTCAGACGATTTTAGACCATTTTAAGCCTAAATCTGACTTCTTAGGACCATTCATTACCAACTTTCAATAATTTTAGGCAATTTAAAGCTATTTTTCAGCTATTTTCAGCCACTTTACGACCATTTATAAGCAAATATCTGTATTTTAAGGACTTTTTTCCAGTGAAAGAATCCAGATAGATTCGAAAATGGCGACATTTTTTTGAGCCGTTTCTAGTGGAATTTTAGCCGCTTTAAAAGTTTTTTAAAGCCATTTTTGGGCTGTTTAGGACAAAAAATTCAAGAATTTTGGTCAATTTTCAGCCACTTTTTGATTATTTTTAGCCTAATTTTAGTCAATTTTCAGCTATTTTTGAGCATTTCCAGGTCATTTTCAGCAATTTAAAAACGATTTTCAGCGATTTTGAGCCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGACGATTTTAAGCTATTT</pcr_primer_p1>
		<pcr_primer_p2>CTCTTAGGTAGGGGAGAATAGG</pcr_primer_p2>
		<pcr_amplicon_size>843</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATTTTTAGTGATTTTACGCCCTTTTCAGCCTAATTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATTTTTAGTGATTTTMCGCCCTTTTCAGCCTAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38212</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>279039</contig_pos>
        <strand></strand>
        <context>tgatttcaac[T/C]tattttcagc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATTTTGACTATTTTTCGCTCATTTAGGACCAAATTCTAATGATTTCAAC</left_flank>
        <right_flank>TATTTTCAGCTATTTTCAGACGATTTTAGACCATTTTAAGCCTAAATCTG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTTCTAGAGTCTTCTGAAGCTCTCAAAAGACATCGAACTGTTCCAGAAGCTACCTGGAAGAATAATCCAAACGCGGCGATTTCCATCAAACTTGGCTTATCAGTGATAGCCGTCAGCTTTTGATCGGGTTTCAGTGATTCGGGCTTCTGCGCTCCATCGTAAATGTCCATGACGAGACCAATGAATCTGAAAAAAATAAACGGGAATTTCTAGTCATTTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATTTTTAGTGATTTTACGCCCTTTTCAGCCTAATTTCGAATTTTGACTATTTTTCGCTCATTTAGGACCAAATTCTAATGATTTCAACTTATTTTCAGCTATTTTCAGACGATTTTAGACCATTTTAAGCCTAAATCTGACTTCTTAGGACCATTCATTACCAACTTTCAATAATTTTAGGCAATTTAAAGCTATTTTTCAGCTATTTTCAGCCACTTTACGACCATTTATAAGCAAATATCTGTATTTTAAGGACTTTTTTCCAGTGAAAGAATCCAGATAGATTCGAAAATGGCGACATTTTTTTGAGCCGTTTCTAGTGGAATTTTAGCCGCTTTAAAAGTTTTTTAAAGCCATTTTTGGGCTGTTTAGGACAAAAAATTCAAGAATTTTGGTCAATTTTCAGCCACTTTTTGATTATTTTTAGCCTAATTTTAGTCAATTTTCAGCTATTTTTGAGCATTTCCAGGTCATTTTCAGCAATTTAAAAACGATTTTCAGCGATTTTGAGCCATTTTTTGACCAATTTTGTCTAAATTTGACTAATTTTAAGCTATTTTTGAGCTACTTTTAAGGTCATTTTTTGTTA</canonical>
            <polymorphic>AAGTTTCTAGAGTCTTCTGAAGCTCTCAAAAGACATCGAACTGTTCCAGAAGCTACCTGGAAGAATAATCCAAACGCGGCGATTTCCATCAAACTTGGCTTATCAGTGATAGCCGTCAGCTTTTGATCGGGTTTCAGTGATTCGGGCTTCTGCGCTCCATCGTAAATGTCCATGACGAGACCAATGAATCTGAAAAAAATAAACGGGAATTTCTAGTCATTTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATTTTTAGTGATTTTACGCCCTTTTCAGCCTAATTTCGAATTTTGACTATTTTTCGCTCATTTAGGACCAAATTCTAATGATTTCAACYTATTTTCAGCTATTTTCAGACGATTTTAGACCATTTTAAGCCTAAATCTGACTTCTTAGGACCATTCATTACCAACTTTCAATAATTTTAGGCAATTTAAAGCTATTTTTCAGCTATTTTCAGCCACTTTACGACCATTTATAAGCAAATATCTGTATTTTAAGGACTTTTTTCCAGTGAAAGAATCCAGATAGATTCGAAAATGGCGACATTTTTTTGAGCCGTTTCTAGTGGAATTTTAGCCGCTTTAAAAGTTTTTTAAAGCCATTTTTGGGCTGTTTAGGACAAAAAATTCAAGAATTTTGGTCAATTTTCAGCCACTTTTTGATTATTTTTAGCCTAATTTTAGTCAATTTTCAGCTATTTTTGAGCATTTCCAGGTCATTTTCAGCAATTTAAAAACGATTTTCAGCGATTTTGAGCCATTTTTTGACCAATTTTGTCTAAATTTGACTAATTTTAAGCTATTTTTGAGCTACTTTTAAGGTCATTTTTTGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGACGATTTTAAGCTATTT</pcr_primer_p1>
		<pcr_primer_p2>CTCTTAGGTAGGGGAGAATAGG</pcr_primer_p2>
		<pcr_amplicon_size>843</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATTTTTAGTGATTTTACGCCCTTTTCAGCCTAATTTCGAATTTTGACTATTTTTCGCTCATTTAGGACCAAATTCTAATGATTTCAACTTATTTTCAGCTATTTTCAGAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATTTTTAGTGATTTTACGCCCTTTTCAGCCTAATTTCGAATTTTGACTATTTTTCGCTCATTTAGGACCAAATTCTAATGATTTCAACYTATTTTCAGCTATTTTCAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38213</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>279059</contig_pos>
        <strand></strand>
        <context>ctattttcag[A/G]cgattttaga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTTAGGACCAAATTCTAATGATTTCAACTTATTTTCAGCTATTTTCAG</left_flank>
        <right_flank>CGATTTTAGACCATTTTAAGCCTAAATCTGACTTCTTAGGACCATTCATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTCTCAAAAGACATCGAACTGTTCCAGAAGCTACCTGGAAGAATAATCCAAACGCGGCGATTTCCATCAAACTTGGCTTATCAGTGATAGCCGTCAGCTTTTGATCGGGTTTCAGTGATTCGGGCTTCTGCGCTCCATCGTAAATGTCCATGACGAGACCAATGAATCTGAAAAAAATAAACGGGAATTTCTAGTCATTTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATTTTTAGTGATTTTACGCCCTTTTCAGCCTAATTTCGAATTTTGACTATTTTTCGCTCATTTAGGACCAAATTCTAATGATTTCAACTTATTTTCAGCTATTTTCAGACGATTTTAGACCATTTTAAGCCTAAATCTGACTTCTTAGGACCATTCATTACCAACTTTCAATAATTTTAGGCAATTTAAAGCTATTTTTCAGCTATTTTCAGCCACTTTACGACCATTTATAAGCAAATATCTGTATTTTAAGGACTTTTTTCCAGTGAAAGAATCCAGATAGATTCGAAAATGGCGACATTTTTTTGAGCCGTTTCTAGTGGAATTTTAGCCGCTTTAAAAGTTTTTTAAAGCCATTTTTGGGCTGTTTAGGACAAAAAATTCAAGAATTTTGGTCAATTTTCAGCCACTTTTTGATTATTTTTAGCCTAATTTTAGTCAATTTTCAGCTATTTTTGAGCATTTCCAGGTCATTTTCAGCAATTTAAAAACGATTTTCAGCGATTTTGAGCCATTTTTTGACCAATTTTGTCTAAATTTGACTAATTTTAAGCTATTTTTGAGCTACTTTTAAGGTCATTTTTTGTTAAATGTTGACCATTTTGGAGC</canonical>
            <polymorphic>AGCTCTCAAAAGACATCGAACTGTTCCAGAAGCTACCTGGAAGAATAATCCAAACGCGGCGATTTCCATCAAACTTGGCTTATCAGTGATAGCCGTCAGCTTTTGATCGGGTTTCAGTGATTCGGGCTTCTGCGCTCCATCGTAAATGTCCATGACGAGACCAATGAATCTGAAAAAAATAAACGGGAATTTCTAGTCATTTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATTTTTAGTGATTTTACGCCCTTTTCAGCCTAATTTCGAATTTTGACTATTTTTCGCTCATTTAGGACCAAATTCTAATGATTTCAACTTATTTTCAGCTATTTTCAGRCGATTTTAGACCATTTTAAGCCTAAATCTGACTTCTTAGGACCATTCATTACCAACTTTCAATAATTTTAGGCAATTTAAAGCTATTTTTCAGCTATTTTCAGCCACTTTACGACCATTTATAAGCAAATATCTGTATTTTAAGGACTTTTTTCCAGTGAAAGAATCCAGATAGATTCGAAAATGGCGACATTTTTTTGAGCCGTTTCTAGTGGAATTTTAGCCGCTTTAAAAGTTTTTTAAAGCCATTTTTGGGCTGTTTAGGACAAAAAATTCAAGAATTTTGGTCAATTTTCAGCCACTTTTTGATTATTTTTAGCCTAATTTTAGTCAATTTTCAGCTATTTTTGAGCATTTCCAGGTCATTTTCAGCAATTTAAAAACGATTTTCAGCGATTTTGAGCCATTTTTTGACCAATTTTGTCTAAATTTGACTAATTTTAAGCTATTTTTGAGCTACTTTTAAGGTCATTTTTTGTTAAATGTTGACCATTTTGGAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>471 327 171 31</canonical_bands>
                <polymorphic_bands>471 358 171</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGACGATTTTAAGCTATTT</pcr_primer_p1>
		<pcr_primer_p2>CTCTTAGGTAGGGGAGAATAGG</pcr_primer_p2>
		<pcr_amplicon_size>843</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATTTTTAGTGATTTTACGCCCTTTTCAGCCTAATTTCGAATTTTGACTATTTTTCGCTCATTTAGGACCAAATTCTAATGATTTCAACTTATTTTCAGCTATTTTCAGACGATTTTAGACCATTTTAAGC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATTTTTAGTGATTTTACGCCCTTTTCAGCCTAATTTCGAATTTTGACTATTTTTCGCTCATTTAGGACCAAATTCTAATGATTTCAACTTATTTTCAGCTATTTTCAGRCGATTTTAGACCATTTTAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38214</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>279131</contig_pos>
        <strand></strand>
        <context>ataattttag[G/A]caatttaaag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTAAATCTGACTTCTTAGGACCATTCATTACCAACTTTCAATAATTTTAG</left_flank>
        <right_flank>CAATTTAAAGCTATTTTTCAGCTATTTTCAGCCACTTTACGACCATTTAT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTGGCTTATCAGTGATAGCCGTCAGCTTTTGATCGGGTTTCAGTGATTCGGGCTTCTGCGCTCCATCGTAAATGTCCATGACGAGACCAATGAATCTGAAAAAAATAAACGGGAATTTCTAGTCATTTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATTTTTAGTGATTTTACGCCCTTTTCAGCCTAATTTCGAATTTTGACTATTTTTCGCTCATTTAGGACCAAATTCTAATGATTTCAACTTATTTTCAGCTATTTTCAGACGATTTTAGACCATTTTAAGCCTAAATCTGACTTCTTAGGACCATTCATTACCAACTTTCAATAATTTTAGGCAATTTAAAGCTATTTTTCAGCTATTTTCAGCCACTTTACGACCATTTATAAGCAAATATCTGTATTTTAAGGACTTTTTTCCAGTGAAAGAATCCAGATAGATTCGAAAATGGCGACATTTTTTTGAGCCGTTTCTAGTGGAATTTTAGCCGCTTTAAAAGTTTTTTAAAGCCATTTTTGGGCTGTTTAGGACAAAAAATTCAAGAATTTTGGTCAATTTTCAGCCACTTTTTGATTATTTTTAGCCTAATTTTAGTCAATTTTCAGCTATTTTTGAGCATTTCCAGGTCATTTTCAGCAATTTAAAAACGATTTTCAGCGATTTTGAGCCATTTTTTGACCAATTTTGTCTAAATTTGACTAATTTTAAGCTATTTTTGAGCTACTTTTAAGGTCATTTTTTGTTAAATGTTGACCATTTTGGAGCATTTTCAGCAGCTTTCCAGCCCCTATTCTCCCCTACCTAAGAGTCATAATGCAGAAAGGCGTGGTCCATGTA</canonical>
            <polymorphic>ACTTGGCTTATCAGTGATAGCCGTCAGCTTTTGATCGGGTTTCAGTGATTCGGGCTTCTGCGCTCCATCGTAAATGTCCATGACGAGACCAATGAATCTGAAAAAAATAAACGGGAATTTCTAGTCATTTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATTTTTAGTGATTTTACGCCCTTTTCAGCCTAATTTCGAATTTTGACTATTTTTCGCTCATTTAGGACCAAATTCTAATGATTTCAACTTATTTTCAGCTATTTTCAGACGATTTTAGACCATTTTAAGCCTAAATCTGACTTCTTAGGACCATTCATTACCAACTTTCAATAATTTTAGRCAATTTAAAGCTATTTTTCAGCTATTTTCAGCCACTTTACGACCATTTATAAGCAAATATCTGTATTTTAAGGACTTTTTTCCAGTGAAAGAATCCAGATAGATTCGAAAATGGCGACATTTTTTTGAGCCGTTTCTAGTGGAATTTTAGCCGCTTTAAAAGTTTTTTAAAGCCATTTTTGGGCTGTTTAGGACAAAAAATTCAAGAATTTTGGTCAATTTTCAGCCACTTTTTGATTATTTTTAGCCTAATTTTAGTCAATTTTCAGCTATTTTTGAGCATTTCCAGGTCATTTTCAGCAATTTAAAAACGATTTTCAGCGATTTTGAGCCATTTTTTGACCAATTTTGTCTAAATTTGACTAATTTTAAGCTATTTTTGAGCTACTTTTAAGGTCATTTTTTGTTAAATGTTGACCATTTTGGAGCATTTTCAGCAGCTTTCCAGCCCCTATTCTCCCCTACCTAAGAGTCATAATGCAGAAAGGCGTGGTCCATGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGACGATTTTAAGCTATTT</pcr_primer_p1>
		<pcr_primer_p2>CTCTTAGGTAGGGGAGAATAGG</pcr_primer_p2>
		<pcr_amplicon_size>843</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATTTTTAGTGATTTTACGCCCTTTTCAGCCTAATTTCGAATTTTGACTATTTTTCGCTCATTTAGGACCAAATTCTAATGATTTCAACTTATTTTCAGCTATTTTCAGACGATTTTAGACCATTTTAAGCCTAAATCTGACTTCTTAGGACCATTCATTACCAACTTTCAATAATTTTAGGCAATTTAAAGCTATTTTTCAGCTATTTTCAGCCACTTTACGACCATTTATAAGCAAATATCTGTATTTTAAGGACTTTTTTCCAGTGAAAGAATCCAGATAGATTCGAAAATGGCGACATTTTTTTGAGCCGTTTCTAGTGGAATTTTAGCCGCTTTAAAAGTTTTTTAAAGCCATTTTTGGGCTGTTTAGGACAAAAAATTCAAGAATTTTGGTCAATTTTCAGCCACTTTTTGATTATTTTTAGCCTAATTTTAGTCAATTTTCAGCTATTTTTGAGCATTTCCAGGTCATTTTCAGCAATTTAAAAACGATTTTCAGCGATTTTGAGCCATTTTTTGACCAATTTTGTCTAAATTTGACTAATTTTAAGCTATTTTTGAGCTACTTTTAAGGTCATTTTTTGTTAAATGTTGACCATTTTGGAGCATTTTCAGCAGCTTTCCAGCCCCTATTCTCCCCTACCTAAGAG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGACGATTTTAAGCTATTTTAAGATATTTTTTTAGTGAAAAAATAGAAAAAAGTTTGTTTTGGAATCATTTTGAGCCGTTTTTAGGCTAATTTTGAGGCATTTCAAAGCTGTTTTAAGGGCATTTTCAGCCAAAATTTCTAGATTTTTGAGCTTTTTCTTGATTCATTCTTAGTCTAATTTTGGCCAATTTTTAGTGATTTTACGCCCTTTTCAGCCTAATTTCGAATTTTGACTATTTTTCGCTCATTTAGGACCAAATTCTAATGATTTCAACTTATTTTCAGCTATTTTCAGACGATTTTAGACCATTTTAAGCCTAAATCTGACTTCTTAGGACCATTCATTACCAACTTTCAATAATTTTAGRCAATTTAAAGCTATTTTTCAGCTATTTTCAGCCACTTTACGACCATTTATAAGCAAATATCTGTATTTTAAGGACTTTTTTCCAGTGAAAGAATCCAGATAGATTCGAAAATGGCGACATTTTTTTGAGCCGTTTCTAGTGGAATTTTAGCCGCTTTAAAAGTTTTTTAAAGCCATTTTTGGGCTGTTTAGGACAAAAAATTCAAGAATTTTGGTCAATTTTCAGCCACTTTTTGATTATTTTTAGCCTAATTTTAGTCAATTTTCAGCTATTTTTGAGCATTTCCAGGTCATTTTCAGCAATTTAAAAACGATTTTCAGCGATTTTGAGCCATTTTTTGACCAATTTTGTCTAAATTTGACTAATTTTAAGCTATTTTTGAGCTACTTTTAAGGTCATTTTTTGTTAAATGTTGACCATTTTGGAGCATTTTCAGCAGCTTTCCAGCCCCTATTCTCCCCTACCTAAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38215</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>282829</contig_pos>
        <strand></strand>
        <context>AGCCGCAGGC[T/C]CTGAAACTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTCAGGACCATTTCTGCTGTTAGTGCTGGTGGCGAGTTAGCCGCAGGC</left_flank>
        <right_flank>CTGAAACTGAACATTTTAAGAATTTTAATTTAAAGGCGCATAGCTGGTCC</right_flank>
        <qual_score>33</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGAACATTGGAAAAATACTTCAAAATACTTTATTCTATACTATAAATACCATAAAACCGAGTTCTCAAACTTGCTTAGGTTCAGTTGGAGCTGAAGCCGGAGCAATCGGAATCTCAACCTTGACTTCCTTCATCTCCTCATCATCACACATCGTCATTCCATCATCACAAATTGTCATTCCCTCCTCCGCCACCGCCTTCTTCTTCTTCTTGTTCTTCTTCTTCTTTGGCATCGTCTCTCCGTCTTGCGTCCGTTCCATCTCTAGACCCTTCGGTATCGGCCTCTTCTTCTTAAAGAATCCGAATCCCATGCCATGTGGATATCGATCATCCGTAGCCCTTCTTGCCGCTTCCGCCGCGTCCCTTAGTTTCTTTCTCGCCTCAGACTCCCCGACTCGATCTTTTGCCAGCGTACTTGGATCTCTAGTAGGTGCACAGAGATTTTCCGTTTTCAGGACCATTTCTGCTGTTAGTGCTGGTGGCGAGTTAGCCGCAGGCTCTGAAACTGAACATTTTAAGAATTTTAATTTAAAGGCGCATAGCTGGTCCCGAAGCTGAAACAGCTACGGTTTCTACAAATGAATTCGTGCGACTTTAAACACAGCAATTTGGAATTATTCCATTTCGACCAATTTTAGGCTGTATAAGAGAATTCGGAAATGGGCAAAAATATAATGATTCCGAATTACTGTAGCTGATTTTGCTTCAGGGCCAGCTATGCGCCTTTAAATAGACATTCGGCAAGAAGGTTCATCGGATAACAATATTATCTTTAGGTTCTTACCGTTAGCTTCGGGGCCTGTTGCAATCTCGTTGGCATTTACAGTAGGCGCTGTTGCAGCAGGAGCTTGCTGAGTTTCTTGAGTGTCCTGAGTTTCCTGAGTTTTCTGAATGTCCTGAGTTTCCTGAGTTTTCGAGGCATTCGGAGCAATCGGAGCTTGCTGAGCTTCCGAGGCTTTCGGGACTTTCGGAGCTTCCGAGGCTTTCGGGACTTTCGGA</canonical>
            <polymorphic>AAAGAACATTGGAAAAATACTTCAAAATACTTTATTCTATACTATAAATACCATAAAACCGAGTTCTCAAACTTGCTTAGGTTCAGTTGGAGCTGAAGCCGGAGCAATCGGAATCTCAACCTTGACTTCCTTCATCTCCTCATCATCACACATCGTCATTCCATCATCACAAATTGTCATTCCCTCCTCCGCCACCGCCTTCTTCTTCTTCTTGTTCTTCTTCTTCTTTGGCATCGTCTCTCCGTCTTGCGTCCGTTCCATCTCTAGACCCTTCGGTATCGGCCTCTTCTTCTTAAAGAATCCGAATCCCATGCCATGTGGATATCGATCATCCGTAGCCCTTCTTGCCGCTTCCGCCGCGTCCCTTAGTTTCTTTCTCGCCTCAGACTCCCCGACTCGATCTTTTGCCAGCGTACTTGGATCTCTAGTAGGTGCACAGAGATTTTCCGTTTTCAGGACCATTTCTGCTGTTAGTGCTGGTGGCGAGTTAGCCGCAGGCYCTGAAACTGAACATTTTAAGAATTTTAATTTAAAGGCGCATAGCTGGTCCCGAAGCTGAAACAGCTACGGTTTCTACAAATGAATTCGTGCGACTTTAAACACAGCAATTTGGAATTATTCCATTTCGACCAATTTTAGGCTGTATAAGAGAATTCGGAAATGGGCAAAAATATAATGATTCCGAATTACTGTAGCTGATTTTGCTTCAGGGCCAGCTATGCGCCTTTAAATAGACATTCGGCAAGAAGGTTCATCGGATAACAATATTATCTTTAGGTTCTTACCGTTAGCTTCGGGGCCTGTTGCAATCTCGTTGGCATTTACAGTAGGCGCTGTTGCAGCAGGAGCTTGCTGAGTTTCTTGAGTGTCCTGAGTTTCCTGAGTTTTCTGAATGTCCTGAGTTTCCTGAGTTTTCGAGGCATTCGGAGCAATCGGAGCTTGCTGAGCTTCCGAGGCTTTCGGGACTTTCGGAGCTTCCGAGGCTTTCGGGACTTTCGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>184 153 92 90 76 75 56 55 49 45 18 17 17 12 9 9 9 9 8 7 6 4</canonical_bands>
                <polymorphic_bands>184 153 92 90 76 75 56 55 52 49 18 17 17 12 9 9 9 9 8 6 4</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>193 155 133 117 110 82 74 36 26 19 19 17 9 8 2</canonical_bands>
                <polymorphic_bands>272 193 133 110 82 74 36 26 19 19 17 9 8 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGAGATTTTCCGTTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>AATCATTATATTTTTGCCCATTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACAGAGATTTTCCGTTTTCAGGACCATTTCTGCTGTTAGTGCTGGTGGCGAGTTAGCCGCAGGCTCTGAAACTGAACATTTTAAGAATTTTAATTTAAAGGCGCATAGCTGGTCCCGAAGCTGAAACAGCTACGGTTTCTACAAATGAATTCGTGCGACTTTAAACACAGCAATTTGGAATTATTCCATTTCGACCAATTTTAGGCTGTATAAGAGAATTCGGAAATGGGCAAAAATATAATGATT</canonical_amplicon>
		<polymorphic_amplicon>ACAGAGATTTTCCGTTTTCAGGACCATTTCTGCTGTTAGTGCTGGTGGCGAGTTAGCCGCAGGCYCTGAAACTGAACATTTTAAGAATTTTAATTTAAAGGCGCATAGCTGGTCCCGAAGCTGAAACAGCTACGGTTTCTACAAATGAATTCGTGCGACTTTAAACACAGCAATTTGGAATTATTCCATTTCGACCAATTTTAGGCTGTATAAGAGAATTCGGAAATGGGCAAAAATATAATGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38216</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>287733</contig_pos>
        <strand></strand>
        <context>ACTCACATCG[A/C]MAACCCATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAACTGAAAATTCAAAATTCGAAGGGTTGAAAAAAGAATAACTCACATCG</left_flank>
        <right_flank>TAACCCATTTTGTTCCTTAACAACTACTGGATGAGCCAAGCTGGAATTGT</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCCACAGAAAATAAGATATACGGGCTCAAAGCTGAAGGTTGAATGAATTCAGCTAAGCTACGGTAGGACAGCTAAATTCAATCAAAGATAATATTCCTCTTACTTGTCATAGTCGAATTCGGGTGTCACCGTTCCGGCGTTTTCTTCCTCGTTCTCTTTCGAGTCATGCTCATAGAGTTCCATACAGTAGCGTGCATAAAGAAATGAGTCCGAATACTGCATTCCCAACATCCTGTAATGCAGAGCGGTGAGCTTGAAGCGGATAATGGCCAAAAATCGGAAACCGAATGAAAACGGAAGATCAAAATGAGCTGAAAAAGTGTATTTTAAGTTCCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTCTTAAAATAACGAAGTGCAAGGAAAAATCCAGCACCAGTCAAGCCAACGACAACTGCTCCAGCCAGTGCAGCACCCAAATAACTGAAAATTCAAAATTCGAAGGGTTGAAAAAAGAATAACTCACATCGATAACCCATTTTGTTCCTTAACAACTACTGGATGAGCCAAGCTGGAATTGTGAGGAGCTGTCAAGTTTTGAGCAGGCGGAGCCATTGCCGAAGAAAAGTTGGCAAAAAACAATTCCATTTTGCTCAGTGAATCTGCGGATTTTCCAATGTCTGACTGGTGGCTATCATAGTCCAGACCCATAGAATCCAGCGAATCGAGTTTTGTTTTGAATTCCAAAAGTTCCGACTTCTTGGAAGACGTCTTCGACATCTTCTCAACTGATCTACCAATCGCTCCAAAATCCAAAGAGAGTCCATTGATCGATTCCGCAAGAGTGAAATTCAGGGAAGTGAGATTCGTCGAGTTCGAAACTTTGGCAGAAGATTTGATCCTGTCAACATCTCGATAGAAATCGGTCAGTTTTGCATCCAATCCATCTAGATTATTCAGATTTTTGTCATCTTCTGAATCCAGATTCCAACTCAAACTTGCATTTTCATTCAACACAAAATCAATATCCG</canonical>
            <polymorphic>TGCCACAGAAAATAAGATATACGGGCTCAAAGCTGAAGGTTGAATGAATTCAGCTAAGCTACGGTAGGACAGCTAAATTCAATCAAAGATAATATTCCTCTTACTTGTCATAGTCGAATTCGGGTGTCACCGTTCCGGCGTTTTCTTCCTCGTTCTCTTTCGAGTCATGCTCATAGAGTTCCATACAGTAGCGTGCATAAAGAAATGAGTCCGAATACTGCATTCCCAACATCCTGTAATGCAGAGCGGTGAGCTTGAAGCGGATAATGGCCAAAAATCGGAAACCGAATGAAAACGGAAGATCAAAATGAGCTGAAAAAGTGTATTTTAAGTTCCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTCTTAAAATAACGAAGTGCAAGGAAAAATCCAGCACCAGTCAAGCCAACGACAACTGCTCCAGCCAGTGCAGCACCCAAATAACTGAAAATTCAAAATTCGAAGGGTTGAAAAAAGAATAACTCACATCGMTAACCCATTTTGTTCCTTAACAACTACTGGATGAGCCAAGCTGGAATTGTGAGGAGCTGTCAAGTTTTGAGCAGGCGGAGCCATTGCCGAAGAAAAGTTGGCAAAAAACAATTCCATTTTGCTCAGTGAATCTGCGGATTTTCCAATGTCTGACTGGTGGCTATCATAGTCCAGACCCATAGAATCCAGCGAATCGAGTTTTGTTTTGAATTCCAAAAGTTCCGACTTCTTGGAAGACGTCTTCGACATCTTCTCAACTGATCTACCAATCGCTCCAAAATCCAAAGAGAGTCCATTGATCGATTCCGCAAGAGTGAAATTCAGGGAAGTGAGATTCGTCGAGTTCGAAACTTTGGCAGAAGATTTGATCCTGTCAACATCTCGATAGAAATCGGTCAGTTTTGCATCCAATCCATCTAGATTATTCAGATTTTTGTCATCTTCTGAATCCAGATTCCAACTCAAACTTGCATTTTCATTCAACACAAAATCAATATCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>497 303 200</canonical_bands>
                <polymorphic_bands>800 200</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>308 197 117 115 57 49 46 39 37 29 6</canonical_bands>
                <polymorphic_bands>308 226 117 115 57 49 46 39 37 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAATAACTGAAAATTCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATTCTATGGGTCTGGACTATGAT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CCAAATAACTGAAAATTCAAAATTCGAAGGGTTGAAAAAAGAATAACTCACATCGATAACCCATTTTGTTCCTTAACAACTACTGGATGAGCCAAGCTGGAATTGTGAGGAGCTGTCAAGTTTTGAGCAGGCGGAGCCATTGCCGAAGAAAAGTTGGCAAAAAACAATTCCATTTTGCTCAGTGAATCTGCGGATTTTCCAATGTCTGACTGGTGGCTATCATAGTCCAGACCCATAGAAT</canonical_amplicon>
		<polymorphic_amplicon>CCAAATAACTGAAAATTCAAAATTCGAAGGGTTGAAAAAAGAATAACTCACATCGMTAACCCATTTTGTTCCTTAACAACTACTGGATGAGCCAAGCTGGAATTGTGAGGAGCTGTCAAGTTTTGAGCAGGCGGAGCCATTGCCGAAGAAAAGTTGGCAAAAAACAATTCCATTTTGCTCAGTGAATCTGCGGATTTTCCAATGTCTGACTGGTGGCTATCATAGTCCAGACCCATAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38217</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>287734</contig_pos>
        <strand>+</strand>
        <context>CTCACATCGM[A/C]AACCCATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AACTGAAAATTCAAAATTCGAAGGGTTGAAAAAAGAATAACTCACATCGA</left_flank>
        <right_flank>AACCCATTTTGTTCCTTAACAACTACTGGATGAGCCAAGCTGGAATTGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCACAGAAAATAAGATATACGGGCTCAAAGCTGAAGGTTGAATGAATTCAGCTAAGCTACGGTAGGACAGCTAAATTCAATCAAAGATAATATTCCTCTTACTTGTCATAGTCGAATTCGGGTGTCACCGTTCCGGCGTTTTCTTCCTCGTTCTCTTTCGAGTCATGCTCATAGAGTTCCATACAGTAGCGTGCATAAAGAAATGAGTCCGAATACTGCATTCCCAACATCCTGTAATGCAGAGCGGTGAGCTTGAAGCGGATAATGGCCAAAAATCGGAAACCGAATGAAAACGGAAGATCAAAATGAGCTGAAAAAGTGTATTTTAAGTTCCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTCTTAAAATAACGAAGTGCAAGGAAAAATCCAGCACCAGTCAAGCCAACGACAACTGCTCCAGCCAGTGCAGCACCCAAATAACTGAAAATTCAAAATTCGAAGGGTTGAAAAAAGAATAACTCACATCGATAACCCATTTTGTTCCTTAACAACTACTGGATGAGCCAAGCTGGAATTGTGAGGAGCTGTCAAGTTTTGAGCAGGCGGAGCCATTGCCGAAGAAAAGTTGGCAAAAAACAATTCCATTTTGCTCAGTGAATCTGCGGATTTTCCAATGTCTGACTGGTGGCTATCATAGTCCAGACCCATAGAATCCAGCGAATCGAGTTTTGTTTTGAATTCCAAAAGTTCCGACTTCTTGGAAGACGTCTTCGACATCTTCTCAACTGATCTACCAATCGCTCCAAAATCCAAAGAGAGTCCATTGATCGATTCCGCAAGAGTGAAATTCAGGGAAGTGAGATTCGTCGAGTTCGAAACTTTGGCAGAAGATTTGATCCTGTCAACATCTCGATAGAAATCGGTCAGTTTTGCATCCAATCCATCTAGATTATTCAGATTTTTGTCATCTTCTGAATCCAGATTCCAACTCAAACTTGCATTTTCATTCAACACAAAATCAATATCCGT</canonical>
            <polymorphic>GCCACAGAAAATAAGATATACGGGCTCAAAGCTGAAGGTTGAATGAATTCAGCTAAGCTACGGTAGGACAGCTAAATTCAATCAAAGATAATATTCCTCTTACTTGTCATAGTCGAATTCGGGTGTCACCGTTCCGGCGTTTTCTTCCTCGTTCTCTTTCGAGTCATGCTCATAGAGTTCCATACAGTAGCGTGCATAAAGAAATGAGTCCGAATACTGCATTCCCAACATCCTGTAATGCAGAGCGGTGAGCTTGAAGCGGATAATGGCCAAAAATCGGAAACCGAATGAAAACGGAAGATCAAAATGAGCTGAAAAAGTGTATTTTAAGTTCCTCAACTTCCAGGAAAAAGACTCACCTCGTTTGTTCTTAAAATAACGAAGTGCAAGGAAAAATCCAGCACCAGTCAAGCCAACGACAACTGCTCCAGCCAGTGCAGCACCCAAATAACTGAAAATTCAAAATTCGAAGGGTTGAAAAAAGAATAACTCACATCGAMAACCCATTTTGTTCCTTAACAACTACTGGATGAGCCAAGCTGGAATTGTGAGGAGCTGTCAAGTTTTGAGCAGGCGGAGCCATTGCCGAAGAAAAGTTGGCAAAAAACAATTCCATTTTGCTCAGTGAATCTGCGGATTTTCCAATGTCTGACTGGTGGCTATCATAGTCCAGACCCATAGAATCCAGCGAATCGAGTTTTGTTTTGAATTCCAAAAGTTCCGACTTCTTGGAAGACGTCTTCGACATCTTCTCAACTGATCTACCAATCGCTCCAAAATCCAAAGAGAGTCCATTGATCGATTCCGCAAGAGTGAAATTCAGGGAAGTGAGATTCGTCGAGTTCGAAACTTTGGCAGAAGATTTGATCCTGTCAACATCTCGATAGAAATCGGTCAGTTTTGCATCCAATCCATCTAGATTATTCAGATTTTTGTCATCTTCTGAATCCAGATTCCAACTCAAACTTGCATTTTCATTCAACACAAAATCAATATCCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>496 303 201</canonical_bands>
                <polymorphic_bands>799 201</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAAATAACTGAAAATTCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATTCTATGGGTCTGGACTATGAT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CCAAATAACTGAAAATTCAAAATTCGAAGGGTTGAAAAAAGAATAACTCACATCGATAACCCATTTTGTTCCTTAACAACTACTGGATGAGCCAAGCTGGAATTGTGAGGAGCTGTCAAGTTTTGAGCAGGCGGAGCCATTGCCGAAGAAAAGTTGGCAAAAAACAATTCCATTTTGCTCAGTGAATCTGCGGATTTTCCAATGTCTGACTGGTGGCTATCATAGTCCAGACCCATAGAAT</canonical_amplicon>
		<polymorphic_amplicon>CCAAATAACTGAAAATTCAAAATTCGAAGGGTTGAAAAAAGAATAACTCACATCGAMAACCCATTTTGTTCCTTAACAACTACTGGATGAGCCAAGCTGGAATTGTGAGGAGCTGTCAAGTTTTGAGCAGGCGGAGCCATTGCCGAAGAAAAGTTGGCAAAAAACAATTCCATTTTGCTCAGTGAATCTGCGGATTTTCCAATGTCTGACTGGTGGCTATCATAGTCCAGACCCATAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38218</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>295204</contig_pos>
        <strand>+</strand>
        <context>GCATTTTCGA[A/G]TTTWAAGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGGAAATCTGCTCAAAAAAACAACATTTTCTCTTTTTCAGCATTTTCGA</left_flank>
        <right_flank>TTTTAAGAAATATTTATTTCTTAGAGTAATTACAGTCATTCAAGGTTACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCAAACACCGCAACAAACAACACATCTTACGACACTTCGTCTAATCTTGCTTATTTTTGGTGTCCAGGGGTAGTTATAGGCAGGCAACTTGAATTTGATGATGAATTTAAGATTAGATTCCTGTAGGGACCCGAAATTTTAATTTTTAGCAGTTTCCTACTTTTCAAAACTCATATATCTCAATTTAAACATCAAATTCGGAACTCTCACAAAATTTGACACTGAAACCATTTTGTTTCGAGTCGCCAGCTCATTTTTGGTTTTTTGGGTTACTGTAGCCGCAAACACCGCGCCAAACAACGTATCTTACGACAAGTTCTCTAATCTTGCTCATTTTTGATCTCCGGGGGTATTTTTAGCCGAGGAATTCAAATTTGATAGTGAATTTGAGATTAGATTTCTGTAGGGACCCGAAATTTGAACTTTTCGCTAATAAATCGATTTTTTTCCGGAAATCTGCTCAAAAAAACAACATTTTCTCTTTTTCAGCATTTTCGAATTTTAAGAAATATTTATTTCTTAGAGTAATTACAGTCATTCAAGGTTACAAGATAATTAATGATGAAATAGAAAAAAATCAATAAATCGATTTTTAGGTGGATGGGGAGGATGAGTGATCGGAAATCTCTACATCTGACTTTCGGCGGCAAATAAAGTATTCTGGGACAATTATAGAAAGTTCTCGACGACGAAGAGCCTGAAAAACTCAAAAATTAAAAAAAAATCGATTTTTTGTAAAATAAAGTTCTTTGACCTACCTGAAAAAAATGTGCAATATATATATTATAAAGATGCGAATTGGAGTTCGGGACCGTACCCGGAAAAAAGCGAATTAATGAAAAAAAATTGTATTAATTAATTGAAACATGTGTATTATACAAATTAGGTATAATTATGTATACATACAAATTGGCATGCTAGAAACTTGGCACAAAAGGAGGATTTTTCTAAATTCTGGAGATTTTTTGTGGGATTTAACTGCGAAATTTGAATTCAGGA</canonical>
            <polymorphic>CGCAAACACCGCAACAAACAACACATCTTACGACACTTCGTCTAATCTTGCTTATTTTTGGTGTCCAGGGGTAGTTATAGGCAGGCAACTTGAATTTGATGATGAATTTAAGATTAGATTCCTGTAGGGACCCGAAATTTTAATTTTTAGCAGTTTCCTACTTTTCAAAACTCATATATCTCAATTTAAACATCAAATTCGGAACTCTCACAAAATTTGACACTGAAACCATTTTGTTTCGAGTCGCCAGCTCATTTTTGGTTTTTTGGGTTACTGTAGCCGCAAACACCGCGCCAAACAACGTATCTTACGACAAGTTCTCTAATCTTGCTCATTTTTGATCTCCGGGGGTATTTTTAGCCGAGGAATTCAAATTTGATAGTGAATTTGAGATTAGATTTCTGTAGGGACCCGAAATTTGAACTTTTCGCTAATAAATCGATTTTTTTCCGGAAATCTGCTCAAAAAAACAACATTTTCTCTTTTTCAGCATTTTCGARTTTTAAGAAATATTTATTTCTTAGAGTAATTACAGTCATTCAAGGTTACAAGATAATTAATGATGAAATAGAAAAAAATCAATAAATCGATTTTTAGGTGGATGGGGAGGATGAGTGATCGGAAATCTCTACATCTGACTTTCGGCGGCAAATAAAGTATTCTGGGACAATTATAGAAAGTTCTCGACGACGAAGAGCCTGAAAAACTCAAAAATTAAAAAAAAATCGATTTTTTGTAAAATAAAGTTCTTTGACCTACCTGAAAAAAATGTGCAATATATATATTATAAAGATGCGAATTGGAGTTCGGGACCGTACCCGGAAAAAAGCGAATTAATGAAAAAAAATTGTATTAATTAATTGAAACATGTGTATTATACAAATTAGGTATAATTATGTATACATACAAATTGGCATGCTAGAAACTTGGCACAAAAGGAGGATTTTTCTAAATTCTGGAGATTTTTTGTGGGATTTAACTGCGAAATTTGAATTCAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>453 153 92 83 60 34 31 31 18 12 12 9 6 6</canonical_bands>
                <polymorphic_bands>536 153 92 60 34 31 31 18 12 12 9 6 6</polymorphic_bands>
            </assay>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>153 114 92 85 83 44 43 41 34 34 31 31 29 27 23 18 17 14 13 12 12 10 9 9 6 6 6 4</canonical_bands>
                <polymorphic_bands>153 114 112 92 85 44 43 41 34 34 31 31 27 23 18 17 14 13 12 12 10 9 9 6 6 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTGAACTTTTCGCTAATAAA</pcr_primer_p1>
		<pcr_primer_p2>CCGAAAGTCAGATGTAGAGATT</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>AATTTGAACTTTTCGCTAATAAATCGATTTTTTTCCGGAAATCTGCTCAAAAAAACAACATTTTCTCTTTTTCAGCATTTTCGAATTTTAAGAAATATTTATTTCTTAGAGTAATTACAGTCATTCAAGGTTACAAGATAATTAATGATGAAATAGAAAAAAATCAATAAATCGATTTTTAGGTGGATGGGGAGGATGAGTGATCGGAAATCTCTACATCTGACTTTCGG</canonical_amplicon>
		<polymorphic_amplicon>AATTTGAACTTTTCGCTAATAAATCGATTTTTTTCCGGAAATCTGCTCAAAAAAACAACATTTTCTCTTTTTCAGCATTTTCGARTTTTAAGAAATATTTATTTCTTAGAGTAATTACAGTCATTCAAGGTTACAAGATAATTAATGATGAAATAGAAAAAAATCAATAAATCGATTTTTAGGTGGATGGGGAGGATGAGTGATCGGAAATCTCTACATCTGACTTTCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38219</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>295208</contig_pos>
        <strand>+</strand>
        <context>TTTCGARTTT[A/T]AAGAAATATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATCTGCTCAAAAAAACAACATTTTCTCTTTTTCAGCATTTTCGAATTT</left_flank>
        <right_flank>AAGAAATATTTATTTCTTAGAGTAATTACAGTCATTCAAGGTTACAAGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACACCGCAACAAACAACACATCTTACGACACTTCGTCTAATCTTGCTTATTTTTGGTGTCCAGGGGTAGTTATAGGCAGGCAACTTGAATTTGATGATGAATTTAAGATTAGATTCCTGTAGGGACCCGAAATTTTAATTTTTAGCAGTTTCCTACTTTTCAAAACTCATATATCTCAATTTAAACATCAAATTCGGAACTCTCACAAAATTTGACACTGAAACCATTTTGTTTCGAGTCGCCAGCTCATTTTTGGTTTTTTGGGTTACTGTAGCCGCAAACACCGCGCCAAACAACGTATCTTACGACAAGTTCTCTAATCTTGCTCATTTTTGATCTCCGGGGGTATTTTTAGCCGAGGAATTCAAATTTGATAGTGAATTTGAGATTAGATTTCTGTAGGGACCCGAAATTTGAACTTTTCGCTAATAAATCGATTTTTTTCCGGAAATCTGCTCAAAAAAACAACATTTTCTCTTTTTCAGCATTTTCGAATTTTAAGAAATATTTATTTCTTAGAGTAATTACAGTCATTCAAGGTTACAAGATAATTAATGATGAAATAGAAAAAAATCAATAAATCGATTTTTAGGTGGATGGGGAGGATGAGTGATCGGAAATCTCTACATCTGACTTTCGGCGGCAAATAAAGTATTCTGGGACAATTATAGAAAGTTCTCGACGACGAAGAGCCTGAAAAACTCAAAAATTAAAAAAAAATCGATTTTTTGTAAAATAAAGTTCTTTGACCTACCTGAAAAAAATGTGCAATATATATATTATAAAGATGCGAATTGGAGTTCGGGACCGTACCCGGAAAAAAGCGAATTAATGAAAAAAAATTGTATTAATTAATTGAAACATGTGTATTATACAAATTAGGTATAATTATGTATACATACAAATTGGCATGCTAGAAACTTGGCACAAAAGGAGGATTTTTCTAAATTCTGGAGATTTTTTGTGGGATTTAACTGCGAAATTTGAATTCAGGACGTT</canonical>
            <polymorphic>AACACCGCAACAAACAACACATCTTACGACACTTCGTCTAATCTTGCTTATTTTTGGTGTCCAGGGGTAGTTATAGGCAGGCAACTTGAATTTGATGATGAATTTAAGATTAGATTCCTGTAGGGACCCGAAATTTTAATTTTTAGCAGTTTCCTACTTTTCAAAACTCATATATCTCAATTTAAACATCAAATTCGGAACTCTCACAAAATTTGACACTGAAACCATTTTGTTTCGAGTCGCCAGCTCATTTTTGGTTTTTTGGGTTACTGTAGCCGCAAACACCGCGCCAAACAACGTATCTTACGACAAGTTCTCTAATCTTGCTCATTTTTGATCTCCGGGGGTATTTTTAGCCGAGGAATTCAAATTTGATAGTGAATTTGAGATTAGATTTCTGTAGGGACCCGAAATTTGAACTTTTCGCTAATAAATCGATTTTTTTCCGGAAATCTGCTCAAAAAAACAACATTTTCTCTTTTTCAGCATTTTCGAATTTWAAGAAATATTTATTTCTTAGAGTAATTACAGTCATTCAAGGTTACAAGATAATTAATGATGAAATAGAAAAAAATCAATAAATCGATTTTTAGGTGGATGGGGAGGATGAGTGATCGGAAATCTCTACATCTGACTTTCGGCGGCAAATAAAGTATTCTGGGACAATTATAGAAAGTTCTCGACGACGAAGAGCCTGAAAAACTCAAAAATTAAAAAAAAATCGATTTTTTGTAAAATAAAGTTCTTTGACCTACCTGAAAAAAATGTGCAATATATATATTATAAAGATGCGAATTGGAGTTCGGGACCGTACCCGGAAAAAAGCGAATTAATGAAAAAAAATTGTATTAATTAATTGAAACATGTGTATTATACAAATTAGGTATAATTATGTATACATACAAATTGGCATGCTAGAAACTTGGCACAAAAGGAGGATTTTTCTAAATTCTGGAGATTTTTTGTGGGATTTAACTGCGAAATTTGAATTCAGGACGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>317 158 119 119 104 54 46 32 28 19 4</canonical_bands>
                <polymorphic_bands>371 158 119 119 104 46 32 28 19 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTGAACTTTTCGCTAATAAA</pcr_primer_p1>
		<pcr_primer_p2>CCGAAAGTCAGATGTAGAGATT</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>AATTTGAACTTTTCGCTAATAAATCGATTTTTTTCCGGAAATCTGCTCAAAAAAACAACATTTTCTCTTTTTCAGCATTTTCGAATTTTAAGAAATATTTATTTCTTAGAGTAATTACAGTCATTCAAGGTTACAAGATAATTAATGATGAAATAGAAAAAAATCAATAAATCGATTTTTAGGTGGATGGGGAGGATGAGTGATCGGAAATCTCTACATCTGACTTTCGG</canonical_amplicon>
		<polymorphic_amplicon>AATTTGAACTTTTCGCTAATAAATCGATTTTTTTCCGGAAATCTGCTCAAAAAAACAACATTTTCTCTTTTTCAGCATTTTCGAATTTWAAGAAATATTTATTTCTTAGAGTAATTACAGTCATTCAAGGTTACAAGATAATTAATGATGAAATAGAAAAAAATCAATAAATCGATTTTTAGGTGGATGGGGAGGATGAGTGATCGGAAATCTCTACATCTGACTTTCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38220</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>295405</contig_pos>
        <strand>+</strand>
        <context>CGAAGAGCCT[A/T]AAAAACTCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATAAAGTATTCTGGGACAATTATAGAAAGTTCTCGACGACGAAGAGCCT</left_flank>
        <right_flank>AAAAACTCAAAAATTAAAAAAAAATCGATTTTTTGTAAAATAAAGTTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACTCTCACAAAATTTGACACTGAAACCATTTTGTTTCGAGTCGCCAGCTCATTTTTGGTTTTTTGGGTTACTGTAGCCGCAAACACCGCGCCAAACAACGTATCTTACGACAAGTTCTCTAATCTTGCTCATTTTTGATCTCCGGGGGTATTTTTAGCCGAGGAATTCAAATTTGATAGTGAATTTGAGATTAGATTTCTGTAGGGACCCGAAATTTGAACTTTTCGCTAATAAATCGATTTTTTTCCGGAAATCTGCTCAAAAAAACAACATTTTCTCTTTTTCAGCATTTTCGAATTTTAAGAAATATTTATTTCTTAGAGTAATTACAGTCATTCAAGGTTACAAGATAATTAATGATGAAATAGAAAAAAATCAATAAATCGATTTTTAGGTGGATGGGGAGGATGAGTGATCGGAAATCTCTACATCTGACTTTCGGCGGCAAATAAAGTATTCTGGGACAATTATAGAAAGTTCTCGACGACGAAGAGCCTGAAAAACTCAAAAATTAAAAAAAAATCGATTTTTTGTAAAATAAAGTTCTTTGACCTACCTGAAAAAAATGTGCAATATATATATTATAAAGATGCGAATTGGAGTTCGGGACCGTACCCGGAAAAAAGCGAATTAATGAAAAAAAATTGTATTAATTAATTGAAACATGTGTATTATACAAATTAGGTATAATTATGTATACATACAAATTGGCATGCTAGAAACTTGGCACAAAAGGAGGATTTTTCTAAATTCTGGAGATTTTTTGTGGGATTTAACTGCGAAATTTGAATTCAGGACGTTGAGAGCTTTGAAATGAGTATAATCATGACCTAATTTTGAAAATTTATATTTTTGGACCACCTATGCGCCTTTCAAGGCGACATTTCAAGTTTAAATAAACATAGTCGAGTTTGGGCTCATTTCGAAGGAAATTTCCTGCTTAATTTTTATTTGAAACGTAGAAAAATCTTAAATGAGTATAATCATGACATGCTTTG</canonical>
            <polymorphic>GAACTCTCACAAAATTTGACACTGAAACCATTTTGTTTCGAGTCGCCAGCTCATTTTTGGTTTTTTGGGTTACTGTAGCCGCAAACACCGCGCCAAACAACGTATCTTACGACAAGTTCTCTAATCTTGCTCATTTTTGATCTCCGGGGGTATTTTTAGCCGAGGAATTCAAATTTGATAGTGAATTTGAGATTAGATTTCTGTAGGGACCCGAAATTTGAACTTTTCGCTAATAAATCGATTTTTTTCCGGAAATCTGCTCAAAAAAACAACATTTTCTCTTTTTCAGCATTTTCGAATTTTAAGAAATATTTATTTCTTAGAGTAATTACAGTCATTCAAGGTTACAAGATAATTAATGATGAAATAGAAAAAAATCAATAAATCGATTTTTAGGTGGATGGGGAGGATGAGTGATCGGAAATCTCTACATCTGACTTTCGGCGGCAAATAAAGTATTCTGGGACAATTATAGAAAGTTCTCGACGACGAAGAGCCTWAAAAACTCAAAAATTAAAAAAAAATCGATTTTTTGTAAAATAAAGTTCTTTGACCTACCTGAAAAAAATGTGCAATATATATATTATAAAGATGCGAATTGGAGTTCGGGACCGTACCCGGAAAAAAGCGAATTAATGAAAAAAAATTGTATTAATTAATTGAAACATGTGTATTATACAAATTAGGTATAATTATGTATACATACAAATTGGCATGCTAGAAACTTGGCACAAAAGGAGGATTTTTCTAAATTCTGGAGATTTTTTGTGGGATTTAACTGCGAAATTTGAATTCAGGACGTTGAGAGCTTTGAAATGAGTATAATCATGACCTAATTTTGAAAATTTATATTTTTGGACCACCTATGCGCCTTTCAAGGCGACATTTCAAGTTTAAATAAACATAGTCGAGTTTGGGCTCATTTCGAAGGAAATTTCCTGCTTAATTTTTATTTGAAACGTAGAAAAATCTTAAATGAGTATAATCATGACATGCTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAGTGATCGGAAATCTCTAC</pcr_primer_p1>
		<pcr_primer_p2>AACTCCAATTCGCATCTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>197</pcr_amplicon_size>
		<canonical_amplicon>ATGAGTGATCGGAAATCTCTACATCTGACTTTCGGCGGCAAATAAAGTATTCTGGGACAATTATAGAAAGTTCTCGACGACGAAGAGCCTGAAAAACTCAAAAATTAAAAAAAAATCGATTTTTTGTAAAATAAAGTTCTTTGACCTACCTGAAAAAAATGTGCAATATATATATTATAAAGATGCGAATTGGAGTT</canonical_amplicon>
		<polymorphic_amplicon>ATGAGTGATCGGAAATCTCTACATCTGACTTTCGGCGGCAAATAAAGTATTCTGGGACAATTATAGAAAGTTCTCGACGACGAAGAGCCTWAAAAACTCAAAAATTAAAAAAAAATCGATTTTTTGTAAAATAAAGTTCTTTGACCTACCTGAAAAAAATGTGCAATATATATATTATAAAGATGCGAATTGGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38221</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>295718</contig_pos>
        <strand></strand>
        <context>tgagagcttt[G/A]aaatgagtat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTTGTGGGATTTAACTGCGAAATTTGAATTCAGGACGTTGAGAGCTTT</left_flank>
        <right_flank>AAATGAGTATAATCATGACCTAATTTTGAAAATTTATATTTTTGGACCAC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTCTTAGAGTAATTACAGTCATTCAAGGTTACAAGATAATTAATGATGAAATAGAAAAAAATCAATAAATCGATTTTTAGGTGGATGGGGAGGATGAGTGATCGGAAATCTCTACATCTGACTTTCGGCGGCAAATAAAGTATTCTGGGACAATTATAGAAAGTTCTCGACGACGAAGAGCCTGAAAAACTCAAAAATTAAAAAAAAATCGATTTTTTGTAAAATAAAGTTCTTTGACCTACCTGAAAAAAATGTGCAATATATATATTATAAAGATGCGAATTGGAGTTCGGGACCGTACCCGGAAAAAAGCGAATTAATGAAAAAAAATTGTATTAATTAATTGAAACATGTGTATTATACAAATTAGGTATAATTATGTATACATACAAATTGGCATGCTAGAAACTTGGCACAAAAGGAGGATTTTTCTAAATTCTGGAGATTTTTTGTGGGATTTAACTGCGAAATTTGAATTCAGGACGTTGAGAGCTTTGAAATGAGTATAATCATGACCTAATTTTGAAAATTTATATTTTTGGACCACCTATGCGCCTTTCAAGGCGACATTTCAAGTTTAAATAAACATAGTCGAGTTTGGGCTCATTTCGAAGGAAATTTCCTGCTTAATTTTTATTTGAAACGTAGAAAAATCTTAAATGAGTATAATCATGACATGCTTTGAAAAATGTTTGGGTCCCGACACGAAAAAAAGTGAAATTACCGTATCTCGGTCAGTTTTGCTTCGAATTTCATGAAAAGTATACGGTTTTGCTCATTTTCTCAAGAGCTTAATAACGACTATAATCATGACCTACTTTTAAGAGTTATCTATTTTTGCTTTTTTTGGCTCCCACCACGAAAAAGTTTAAAGCTACCGTAATTTTTTTAATTTTTGTTCAAATTCTATAAAACTGCTATCATTAAATTTCTATTGAAAAGTGCTTCAAAATGAATATAATCACGACCTACTTTTAAACATTTTCTATTTTGACTG</canonical>
            <polymorphic>TATTTCTTAGAGTAATTACAGTCATTCAAGGTTACAAGATAATTAATGATGAAATAGAAAAAAATCAATAAATCGATTTTTAGGTGGATGGGGAGGATGAGTGATCGGAAATCTCTACATCTGACTTTCGGCGGCAAATAAAGTATTCTGGGACAATTATAGAAAGTTCTCGACGACGAAGAGCCTGAAAAACTCAAAAATTAAAAAAAAATCGATTTTTTGTAAAATAAAGTTCTTTGACCTACCTGAAAAAAATGTGCAATATATATATTATAAAGATGCGAATTGGAGTTCGGGACCGTACCCGGAAAAAAGCGAATTAATGAAAAAAAATTGTATTAATTAATTGAAACATGTGTATTATACAAATTAGGTATAATTATGTATACATACAAATTGGCATGCTAGAAACTTGGCACAAAAGGAGGATTTTTCTAAATTCTGGAGATTTTTTGTGGGATTTAACTGCGAAATTTGAATTCAGGACGTTGAGAGCTTTRAAATGAGTATAATCATGACCTAATTTTGAAAATTTATATTTTTGGACCACCTATGCGCCTTTCAAGGCGACATTTCAAGTTTAAATAAACATAGTCGAGTTTGGGCTCATTTCGAAGGAAATTTCCTGCTTAATTTTTATTTGAAACGTAGAAAAATCTTAAATGAGTATAATCATGACATGCTTTGAAAAATGTTTGGGTCCCGACACGAAAAAAAGTGAAATTACCGTATCTCGGTCAGTTTTGCTTCGAATTTCATGAAAAGTATACGGTTTTGCTCATTTTCTCAAGAGCTTAATAACGACTATAATCATGACCTACTTTTAAGAGTTATCTATTTTTGCTTTTTTTGGCTCCCACCACGAAAAAGTTTAAAGCTACCGTAATTTTTTTAATTTTTGTTCAAATTCTATAAAACTGCTATCATTAAATTTCTATTGAAAAGTGCTTCAAAATGAATATAATCACGACCTACTTTTAAACATTTTCTATTTTGACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAAAAGGAGGATTTTTCTAA</pcr_primer_p1>
		<pcr_primer_p2>TAGGAGTCTGAAGGGTTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>867</pcr_amplicon_size>
		<canonical_amplicon>CACAAAAGGAGGATTTTTCTAAATTCTGGAGATTTTTTGTGGGATTTAACTGCGAAATTTGAATTCAGGACGTTGAGAGCTTTGAAATGAGTATAATCATGACC</canonical_amplicon>
		<polymorphic_amplicon>CACAAAAGGAGGATTTTTCTAAATTCTGGAGATTTTTTGTGGGATTTAACTGCGAAATTTGAATTCAGGACGTTGAGAGCTTTRAAATGAGTATAATCATGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38222</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>295748</contig_pos>
        <strand></strand>
        <context>ctaattttga[A/G]aatttatatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCAGGACGTTGAGAGCTTTGAAATGAGTATAATCATGACCTAATTTTGA</left_flank>
        <right_flank>AATTTATATTTTTGGACCACCTATGCGCCTTTCAAGGCGACATTTCAAGT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTACAAGATAATTAATGATGAAATAGAAAAAAATCAATAAATCGATTTTTAGGTGGATGGGGAGGATGAGTGATCGGAAATCTCTACATCTGACTTTCGGCGGCAAATAAAGTATTCTGGGACAATTATAGAAAGTTCTCGACGACGAAGAGCCTGAAAAACTCAAAAATTAAAAAAAAATCGATTTTTTGTAAAATAAAGTTCTTTGACCTACCTGAAAAAAATGTGCAATATATATATTATAAAGATGCGAATTGGAGTTCGGGACCGTACCCGGAAAAAAGCGAATTAATGAAAAAAAATTGTATTAATTAATTGAAACATGTGTATTATACAAATTAGGTATAATTATGTATACATACAAATTGGCATGCTAGAAACTTGGCACAAAAGGAGGATTTTTCTAAATTCTGGAGATTTTTTGTGGGATTTAACTGCGAAATTTGAATTCAGGACGTTGAGAGCTTTGAAATGAGTATAATCATGACCTAATTTTGAAAATTTATATTTTTGGACCACCTATGCGCCTTTCAAGGCGACATTTCAAGTTTAAATAAACATAGTCGAGTTTGGGCTCATTTCGAAGGAAATTTCCTGCTTAATTTTTATTTGAAACGTAGAAAAATCTTAAATGAGTATAATCATGACATGCTTTGAAAAATGTTTGGGTCCCGACACGAAAAAAAGTGAAATTACCGTATCTCGGTCAGTTTTGCTTCGAATTTCATGAAAAGTATACGGTTTTGCTCATTTTCTCAAGAGCTTAATAACGACTATAATCATGACCTACTTTTAAGAGTTATCTATTTTTGCTTTTTTTGGCTCCCACCACGAAAAAGTTTAAAGCTACCGTAATTTTTTTAATTTTTGTTCAAATTCTATAAAACTGCTATCATTAAATTTCTATTGAAAAGTGCTTCAAAATGAATATAATCACGACCTACTTTTAAACATTTTCTATTTTGACTGCTTTAGGGTCTCGCCACGAATTGTCAAACG</canonical>
            <polymorphic>GTTACAAGATAATTAATGATGAAATAGAAAAAAATCAATAAATCGATTTTTAGGTGGATGGGGAGGATGAGTGATCGGAAATCTCTACATCTGACTTTCGGCGGCAAATAAAGTATTCTGGGACAATTATAGAAAGTTCTCGACGACGAAGAGCCTGAAAAACTCAAAAATTAAAAAAAAATCGATTTTTTGTAAAATAAAGTTCTTTGACCTACCTGAAAAAAATGTGCAATATATATATTATAAAGATGCGAATTGGAGTTCGGGACCGTACCCGGAAAAAAGCGAATTAATGAAAAAAAATTGTATTAATTAATTGAAACATGTGTATTATACAAATTAGGTATAATTATGTATACATACAAATTGGCATGCTAGAAACTTGGCACAAAAGGAGGATTTTTCTAAATTCTGGAGATTTTTTGTGGGATTTAACTGCGAAATTTGAATTCAGGACGTTGAGAGCTTTGAAATGAGTATAATCATGACCTAATTTTGARAATTTATATTTTTGGACCACCTATGCGCCTTTCAAGGCGACATTTCAAGTTTAAATAAACATAGTCGAGTTTGGGCTCATTTCGAAGGAAATTTCCTGCTTAATTTTTATTTGAAACGTAGAAAAATCTTAAATGAGTATAATCATGACATGCTTTGAAAAATGTTTGGGTCCCGACACGAAAAAAAGTGAAATTACCGTATCTCGGTCAGTTTTGCTTCGAATTTCATGAAAAGTATACGGTTTTGCTCATTTTCTCAAGAGCTTAATAACGACTATAATCATGACCTACTTTTAAGAGTTATCTATTTTTGCTTTTTTTGGCTCCCACCACGAAAAAGTTTAAAGCTACCGTAATTTTTTTAATTTTTGTTCAAATTCTATAAAACTGCTATCATTAAATTTCTATTGAAAAGTGCTTCAAAATGAATATAATCACGACCTACTTTTAAACATTTTCTATTTTGACTGCTTTAGGGTCTCGCCACGAATTGTCAAACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>407 154 132 101 89 53 34 24 6</canonical_bands>
                <polymorphic_bands>407 154 142 132 101 34 24 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACAAAAGGAGGATTTTTCTAA</pcr_primer_p1>
		<pcr_primer_p2>TAGGAGTCTGAAGGGTTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>867</pcr_amplicon_size>
		<canonical_amplicon>CACAAAAGGAGGATTTTTCTAAATTCTGGAGATTTTTTGTGGGATTTAACTGCGAAATTTGAATTCAGGACGTTGAGAGCTTTGAAATGAGTATAATCATGACCTAATTTTGAAAATTTATATTTTTGGACCAC</canonical_amplicon>
		<polymorphic_amplicon>CACAAAAGGAGGATTTTTCTAAATTCTGGAGATTTTTTGTGGGATTTAACTGCGAAATTTGAATTCAGGACGTTGAGAGCTTTGAAATGAGTATAATCATGACCTAATTTTGARAATTTATATTTTTGGACCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38223</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>295767</contig_pos>
        <strand></strand>
        <context>tttttggacc[A/C]cctatgcgcc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGAAATGAGTATAATCATGACCTAATTTTGAAAATTTATATTTTTGGACC</left_flank>
        <right_flank>CCTATGCGCCTTTCAAGGCGACATTTCAAGTTTAAATAAACATAGTCGAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAATAGAAAAAAATCAATAAATCGATTTTTAGGTGGATGGGGAGGATGAGTGATCGGAAATCTCTACATCTGACTTTCGGCGGCAAATAAAGTATTCTGGGACAATTATAGAAAGTTCTCGACGACGAAGAGCCTGAAAAACTCAAAAATTAAAAAAAAATCGATTTTTTGTAAAATAAAGTTCTTTGACCTACCTGAAAAAAATGTGCAATATATATATTATAAAGATGCGAATTGGAGTTCGGGACCGTACCCGGAAAAAAGCGAATTAATGAAAAAAAATTGTATTAATTAATTGAAACATGTGTATTATACAAATTAGGTATAATTATGTATACATACAAATTGGCATGCTAGAAACTTGGCACAAAAGGAGGATTTTTCTAAATTCTGGAGATTTTTTGTGGGATTTAACTGCGAAATTTGAATTCAGGACGTTGAGAGCTTTGAAATGAGTATAATCATGACCTAATTTTGAAAATTTATATTTTTGGACCACCTATGCGCCTTTCAAGGCGACATTTCAAGTTTAAATAAACATAGTCGAGTTTGGGCTCATTTCGAAGGAAATTTCCTGCTTAATTTTTATTTGAAACGTAGAAAAATCTTAAATGAGTATAATCATGACATGCTTTGAAAAATGTTTGGGTCCCGACACGAAAAAAAGTGAAATTACCGTATCTCGGTCAGTTTTGCTTCGAATTTCATGAAAAGTATACGGTTTTGCTCATTTTCTCAAGAGCTTAATAACGACTATAATCATGACCTACTTTTAAGAGTTATCTATTTTTGCTTTTTTTGGCTCCCACCACGAAAAAGTTTAAAGCTACCGTAATTTTTTTAATTTTTGTTCAAATTCTATAAAACTGCTATCATTAAATTTCTATTGAAAAGTGCTTCAAAATGAATATAATCACGACCTACTTTTAAACATTTTCTATTTTGACTGCTTTAGGGTCTCGCCACGAATTGTCAAACGCTACTGTAACTCCCTTCGT</canonical>
            <polymorphic>TGAAATAGAAAAAAATCAATAAATCGATTTTTAGGTGGATGGGGAGGATGAGTGATCGGAAATCTCTACATCTGACTTTCGGCGGCAAATAAAGTATTCTGGGACAATTATAGAAAGTTCTCGACGACGAAGAGCCTGAAAAACTCAAAAATTAAAAAAAAATCGATTTTTTGTAAAATAAAGTTCTTTGACCTACCTGAAAAAAATGTGCAATATATATATTATAAAGATGCGAATTGGAGTTCGGGACCGTACCCGGAAAAAAGCGAATTAATGAAAAAAAATTGTATTAATTAATTGAAACATGTGTATTATACAAATTAGGTATAATTATGTATACATACAAATTGGCATGCTAGAAACTTGGCACAAAAGGAGGATTTTTCTAAATTCTGGAGATTTTTTGTGGGATTTAACTGCGAAATTTGAATTCAGGACGTTGAGAGCTTTGAAATGAGTATAATCATGACCTAATTTTGAAAATTTATATTTTTGGACCMCCTATGCGCCTTTCAAGGCGACATTTCAAGTTTAAATAAACATAGTCGAGTTTGGGCTCATTTCGAAGGAAATTTCCTGCTTAATTTTTATTTGAAACGTAGAAAAATCTTAAATGAGTATAATCATGACATGCTTTGAAAAATGTTTGGGTCCCGACACGAAAAAAAGTGAAATTACCGTATCTCGGTCAGTTTTGCTTCGAATTTCATGAAAAGTATACGGTTTTGCTCATTTTCTCAAGAGCTTAATAACGACTATAATCATGACCTACTTTTAAGAGTTATCTATTTTTGCTTTTTTTGGCTCCCACCACGAAAAAGTTTAAAGCTACCGTAATTTTTTTAATTTTTGTTCAAATTCTATAAAACTGCTATCATTAAATTTCTATTGAAAAGTGCTTCAAAATGAATATAATCACGACCTACTTTTAAACATTTTCTATTTTGACTGCTTTAGGGTCTCGCCACGAATTGTCAAACGCTACTGTAACTCCCTTCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>159 156 139 99 92 85 60 49 39 37 33 20 17 12 3</canonical_bands>
                <polymorphic_bands>251 156 139 99 85 60 49 39 37 33 20 17 12 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACAAAAGGAGGATTTTTCTAA</pcr_primer_p1>
		<pcr_primer_p2>TAGGAGTCTGAAGGGTTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>867</pcr_amplicon_size>
		<canonical_amplicon>CACAAAAGGAGGATTTTTCTAAATTCTGGAGATTTTTTGTGGGATTTAACTGCGAAATTTGAATTCAGGACGTTGAGAGCTTTGAAATGAGTATAATCATGACCTAATTTTGAAAATTTATATTTTTGGACCACCTATGCGCCTTTCAAGGCG</canonical_amplicon>
		<polymorphic_amplicon>CACAAAAGGAGGATTTTTCTAAATTCTGGAGATTTTTTGTGGGATTTAACTGCGAAATTTGAATTCAGGACGTTGAGAGCTTTGAAATGAGTATAATCATGACCTAATTTTGAAAATTTATATTTTTGGACCMCCTATGCGCCTTTCAAGGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38224</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>295801</contig_pos>
        <strand></strand>
        <context>tttcaagttt[A/G]aataaacata</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTATATTTTTGGACCACCTATGCGCCTTTCAAGGCGACATTTCAAGTTT</left_flank>
        <right_flank>AATAAACATAGTCGAGTTTGGGCTCATTTCGAAGGAAATTTCCTGCTTAA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGGATGGGGAGGATGAGTGATCGGAAATCTCTACATCTGACTTTCGGCGGCAAATAAAGTATTCTGGGACAATTATAGAAAGTTCTCGACGACGAAGAGCCTGAAAAACTCAAAAATTAAAAAAAAATCGATTTTTTGTAAAATAAAGTTCTTTGACCTACCTGAAAAAAATGTGCAATATATATATTATAAAGATGCGAATTGGAGTTCGGGACCGTACCCGGAAAAAAGCGAATTAATGAAAAAAAATTGTATTAATTAATTGAAACATGTGTATTATACAAATTAGGTATAATTATGTATACATACAAATTGGCATGCTAGAAACTTGGCACAAAAGGAGGATTTTTCTAAATTCTGGAGATTTTTTGTGGGATTTAACTGCGAAATTTGAATTCAGGACGTTGAGAGCTTTGAAATGAGTATAATCATGACCTAATTTTGAAAATTTATATTTTTGGACCACCTATGCGCCTTTCAAGGCGACATTTCAAGTTTAAATAAACATAGTCGAGTTTGGGCTCATTTCGAAGGAAATTTCCTGCTTAATTTTTATTTGAAACGTAGAAAAATCTTAAATGAGTATAATCATGACATGCTTTGAAAAATGTTTGGGTCCCGACACGAAAAAAAGTGAAATTACCGTATCTCGGTCAGTTTTGCTTCGAATTTCATGAAAAGTATACGGTTTTGCTCATTTTCTCAAGAGCTTAATAACGACTATAATCATGACCTACTTTTAAGAGTTATCTATTTTTGCTTTTTTTGGCTCCCACCACGAAAAAGTTTAAAGCTACCGTAATTTTTTTAATTTTTGTTCAAATTCTATAAAACTGCTATCATTAAATTTCTATTGAAAAGTGCTTCAAAATGAATATAATCACGACCTACTTTTAAACATTTTCTATTTTGACTGCTTTAGGGTCTCGCCACGAATTGTCAAACGCTACTGTAACTCCCTTCGTTTTGCTCCAAGTTTGATATAACTTTCACCATTCT</canonical>
            <polymorphic>GTGGATGGGGAGGATGAGTGATCGGAAATCTCTACATCTGACTTTCGGCGGCAAATAAAGTATTCTGGGACAATTATAGAAAGTTCTCGACGACGAAGAGCCTGAAAAACTCAAAAATTAAAAAAAAATCGATTTTTTGTAAAATAAAGTTCTTTGACCTACCTGAAAAAAATGTGCAATATATATATTATAAAGATGCGAATTGGAGTTCGGGACCGTACCCGGAAAAAAGCGAATTAATGAAAAAAAATTGTATTAATTAATTGAAACATGTGTATTATACAAATTAGGTATAATTATGTATACATACAAATTGGCATGCTAGAAACTTGGCACAAAAGGAGGATTTTTCTAAATTCTGGAGATTTTTTGTGGGATTTAACTGCGAAATTTGAATTCAGGACGTTGAGAGCTTTGAAATGAGTATAATCATGACCTAATTTTGAAAATTTATATTTTTGGACCACCTATGCGCCTTTCAAGGCGACATTTCAAGTTTRAATAAACATAGTCGAGTTTGGGCTCATTTCGAAGGAAATTTCCTGCTTAATTTTTATTTGAAACGTAGAAAAATCTTAAATGAGTATAATCATGACATGCTTTGAAAAATGTTTGGGTCCCGACACGAAAAAAAGTGAAATTACCGTATCTCGGTCAGTTTTGCTTCGAATTTCATGAAAAGTATACGGTTTTGCTCATTTTCTCAAGAGCTTAATAACGACTATAATCATGACCTACTTTTAAGAGTTATCTATTTTTGCTTTTTTTGGCTCCCACCACGAAAAAGTTTAAAGCTACCGTAATTTTTTTAATTTTTGTTCAAATTCTATAAAACTGCTATCATTAAATTTCTATTGAAAAGTGCTTCAAAATGAATATAATCACGACCTACTTTTAAACATTTTCTATTTTGACTGCTTTAGGGTCTCGCCACGAATTGTCAAACGCTACTGTAACTCCCTTCGTTTTGCTCCAAGTTTGATATAACTTTCACCATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 291 106 104</canonical_bands>
                <polymorphic_bands>790 106 104</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>136 119 119 119 118 105 51 49 48 35 29 29 20 19 4</canonical_bands>
                <polymorphic_bands>168 136 119 119 118 105 51 48 35 29 29 20 19 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACAAAAGGAGGATTTTTCTAA</pcr_primer_p1>
		<pcr_primer_p2>TAGGAGTCTGAAGGGTTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>867</pcr_amplicon_size>
		<canonical_amplicon>CACAAAAGGAGGATTTTTCTAAATTCTGGAGATTTTTTGTGGGATTTAACTGCGAAATTTGAATTCAGGACGTTGAGAGCTTTGAAATGAGTATAATCATGACCTAATTTTGAAAATTTATATTTTTGGACCACCTATGCGCCTTTCAAGGCGACATTTCAAGTTTAAATAAACATAGTCGAGTTTG</canonical_amplicon>
		<polymorphic_amplicon>CACAAAAGGAGGATTTTTCTAAATTCTGGAGATTTTTTGTGGGATTTAACTGCGAAATTTGAATTCAGGACGTTGAGAGCTTTGAAATGAGTATAATCATGACCTAATTTTGAAAATTTATATTTTTGGACCACCTATGCGCCTTTCAAGGCGACATTTCAAGTTTRAATAAACATAGTCGAGTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38225</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>297644</contig_pos>
        <strand></strand>
        <context>atttttaaaa[T/A]tttaaaattt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGAAGTTTAGATTCAATTTTAAAGAAATATGAGCAAAAATATTTTTAAAA</left_flank>
        <right_flank>TTTAAAATTTTCTAAAAATGATCATAACTCCTCCATTTCCTAACCGATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCATCATGACCTACTTTCCTCAAATTTGATTTTTCCGACATCCTATGCGCCTTTAATCTCGAAATTTCAAATTTGAAGGAACATGGTCATGATTATACTCATTTTGAAGCTCTTAGAATGACAATTTTGAATTCATAAGAATTTTTGAGTGTTAACCTAAATTGATTGAGATACGAGTAAAACAAGGTTTCAGAAAAAAACATTTGAAGATAAGTAAAACAACCGTATTTCCTTTAATTTTGAGTTAAACTCAGATTTTTTGATGAATCAATGTTTGACATGTTAAGAGTTTCAAAATGAGTATAATCATGATTATGTTCCTCAAAATTCGAAATTTCGAGTTTAAAGGCGCATAGGGGGGTCTGAATTTCGAAACTCTAGGAAAATAGGCCATGATTATACTCATTTTGAAGCTCCTAATTTGCCGAGTTCAAAATTCACAAAATTGTGAAGTTTAGATTCAATTTTAAAGAAATATGAGCAAAAATATTTTTAAAATTTTAAAATTTTCTAAAAATGATCATAACTCCTCCATTTCCTAACCGATTTCGATGATTCTTGGCTTAAAATTTTTGGAATTTTCTGGAATTTTCTAGAAAAAATCAAAATCAACAATTACTGTACCTGCTTATTGCTCTTCCTAATCGCTCCCGACTCACAGTAGCCCACTTTCATTCGATCGATAATAAAACGAAGGACCTCTCTCCAAAGGATAATTGCCGAGTCGATTTCAGCAAATGACATTTCTTTGTGTTTTGTGAATCTGGAAAATCTATAAAAATTTTCAGAAAAAATCTGGAATTTTTGAAAAAAATAATTTTCCAAAATTTTCCGTTTTTCAAAAAAAAAATTCTTACTTATTATGAGATTTCATTGCTTTTCTGAAATGAAAAAGCACGCATTCTTTGAATACCGACCAGTAATGTGCGCTGAAAAAAAATCGATTTTTTTCTAGCAATTTCTAGAAAATTCTGAAATTTTGTTACCTGAATCCCAATT</canonical>
            <polymorphic>ACCATCATGACCTACTTTCCTCAAATTTGATTTTTCCGACATCCTATGCGCCTTTAATCTCGAAATTTCAAATTTGAAGGAACATGGTCATGATTATACTCATTTTGAAGCTCTTAGAATGACAATTTTGAATTCATAAGAATTTTTGAGTGTTAACCTAAATTGATTGAGATACGAGTAAAACAAGGTTTCAGAAAAAAACATTTGAAGATAAGTAAAACAACCGTATTTCCTTTAATTTTGAGTTAAACTCAGATTTTTTGATGAATCAATGTTTGACATGTTAAGAGTTTCAAAATGAGTATAATCATGATTATGTTCCTCAAAATTCGAAATTTCGAGTTTAAAGGCGCATAGGGGGGTCTGAATTTCGAAACTCTAGGAAAATAGGCCATGATTATACTCATTTTGAAGCTCCTAATTTGCCGAGTTCAAAATTCACAAAATTGTGAAGTTTAGATTCAATTTTAAAGAAATATGAGCAAAAATATTTTTAAAAWTTTAAAATTTTCTAAAAATGATCATAACTCCTCCATTTCCTAACCGATTTCGATGATTCTTGGCTTAAAATTTTTGGAATTTTCTGGAATTTTCTAGAAAAAATCAAAATCAACAATTACTGTACCTGCTTATTGCTCTTCCTAATCGCTCCCGACTCACAGTAGCCCACTTTCATTCGATCGATAATAAAACGAAGGACCTCTCTCCAAAGGATAATTGCCGAGTCGATTTCAGCAAATGACATTTCTTTGTGTTTTGTGAATCTGGAAAATCTATAAAAATTTTCAGAAAAAATCTGGAATTTTTGAAAAAAATAATTTTCCAAAATTTTCCGTTTTTCAAAAAAAAAATTCTTACTTATTATGAGATTTCATTGCTTTTCTGAAATGAAAAAGCACGCATTCTTTGAATACCGACCAGTAATGTGCGCTGAAAAAAAATCGATTTTTTTCTAGCAATTTCTAGAAAATTCTGAAATTTTGTTACCTGAATCCCAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>193 186 119 69 63 62 60 40 33 26 24 23 23 20 10 10 9 8 8 7 7</canonical_bands>
                <polymorphic_bands>193 186 119 70 69 63 60 40 33 26 24 23 23 20 10 10 9 8 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>108 101 90 76 65 63 53 53 40 34 33 27 23 23 20 20 20 19 16 16 11 10 10 10 9 9 8 8 7 7 7 4</canonical_bands>
                <polymorphic_bands>108 101 90 76 65 63 53 53 42 40 33 27 23 23 20 20 20 19 16 16 11 10 10 10 9 9 8 7 7 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATTCCACACATTTTAAGC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTTTAAGCCAAGAATCATC</pcr_primer_p2>
		<pcr_amplicon_size>903</pcr_amplicon_size>
		<canonical_amplicon>ATTTTAAAATTTTCTAAAAATGATCATAACTCCTCCATTTCCTAACCGATTTCGATGATTCTTGGCTTAAAATTTT</canonical_amplicon>
		<polymorphic_amplicon>AWTTTAAAATTTTCTAAAAATGATCATAACTCCTCCATTTCCTAACCGATTTCGATGATTCTTGGCTTAAAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38226</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>303085</contig_pos>
        <strand></strand>
        <context>atgcaatgat[G/A]ttaaaatttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGAT</left_flank>
        <right_flank>TTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCA</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAAAATTTCAGCAAAAAAAAAAGAAAATGGCTAAAATTGAATTTCAGGGACAACAGAAAGGAAAAATCGTGTTCTGGATGATTCGAAAAGTCCAAAAAAGAAATTAGCGCTTCACAATGCCTAGCAAAGTGTCCAGACCCAAAATTGATCCCTCATCTTTTCCTTCATAAATGTTATCTCCTTGAAAACCGCCGAATGTCGCGTTGGCGAAATCCACAACTTTGATTCGGACCAGATTTTCGATTGGCGTTGATTCTAGAAGATAAATTGGGATTTTTGTGATTCCAATGGGGTTTTTGGAAGATAAAACTGTGAAATTTAAATTTACCACAAAATTTGCTTTCAAATGAGTATAAACACGACCATGTTCCTTTAAATTTGAAATTTTCGAGTTTAAGGGCGCATGAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAG</canonical>
            <polymorphic>ATGAAAATTTCAGCAAAAAAAAAAGAAAATGGCTAAAATTGAATTTCAGGGACAACAGAAAGGAAAAATCGTGTTCTGGATGATTCGAAAAGTCCAAAAAAGAAATTAGCGCTTCACAATGCCTAGCAAAGTGTCCAGACCCAAAATTGATCCCTCATCTTTTCCTTCATAAATGTTATCTCCTTGAAAACCGCCGAATGTCGCGTTGGCGAAATCCACAACTTTGATTCGGACCAGATTTTCGATTGGCGTTGATTCTAGAAGATAAATTGGGATTTTTGTGATTCCAATGGGGTTTTTGGAAGATAAAACTGTGAAATTTAAATTTACCACAAAATTTGCTTTCAAATGAGTATAAACACGACCATGTTCCTTTAAATTTGAAATTTTCGAGTTTAAGGGCGCATGAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATRTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGGGGTTTTTGGAAGATAA</pcr_primer_p1>
		<pcr_primer_p2>AAACATTTTTAAGGGCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>747</pcr_amplicon_size>
		<canonical_amplicon>ATGGGGTTTTTGGAAGATAAAACTGTGAAATTTAAATTTACCACAAAATTTGCTTTCAAATGAGTATAAACACGACCATGTTCCTTTAAATTTGAAATTTTCGAGTTTAAGGGCGCATGAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAAT</canonical_amplicon>
		<polymorphic_amplicon>ATGGGGTTTTTGGAAGATAAAACTGTGAAATTTAAATTTACCACAAAATTTGCTTTCAAATGAGTATAAACACGACCATGTTCCTTTAAATTTGAAATTTTCGAGTTTAAGGGCGCATGAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATRTTAAAATTTTTGATTTTGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38227</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>303145</contig_pos>
        <strand></strand>
        <context>aactttgcaa[A/G]tatcgacttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAA</left_flank>
        <right_flank>TATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGAAAAATCGTGTTCTGGATGATTCGAAAAGTCCAAAAAAGAAATTAGCGCTTCACAATGCCTAGCAAAGTGTCCAGACCCAAAATTGATCCCTCATCTTTTCCTTCATAAATGTTATCTCCTTGAAAACCGCCGAATGTCGCGTTGGCGAAATCCACAACTTTGATTCGGACCAGATTTTCGATTGGCGTTGATTCTAGAAGATAAATTGGGATTTTTGTGATTCCAATGGGGTTTTTGGAAGATAAAACTGTGAAATTTAAATTTACCACAAAATTTGCTTTCAAATGAGTATAAACACGACCATGTTCCTTTAAATTTGAAATTTTCGAGTTTAAGGGCGCATGAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCT</canonical>
            <polymorphic>AGGAAAAATCGTGTTCTGGATGATTCGAAAAGTCCAAAAAAGAAATTAGCGCTTCACAATGCCTAGCAAAGTGTCCAGACCCAAAATTGATCCCTCATCTTTTCCTTCATAAATGTTATCTCCTTGAAAACCGCCGAATGTCGCGTTGGCGAAATCCACAACTTTGATTCGGACCAGATTTTCGATTGGCGTTGATTCTAGAAGATAAATTGGGATTTTTGTGATTCCAATGGGGTTTTTGGAAGATAAAACTGTGAAATTTAAATTTACCACAAAATTTGCTTTCAAATGAGTATAAACACGACCATGTTCCTTTAAATTTGAAATTTTCGAGTTTAAGGGCGCATGAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAARTATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGGGGTTTTTGGAAGATAA</pcr_primer_p1>
		<pcr_primer_p2>AAACATTTTTAAGGGCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>747</pcr_amplicon_size>
		<canonical_amplicon>ATGGGGTTTTTGGAAGATAAAACTGTGAAATTTAAATTTACCACAAAATTTGCTTTCAAATGAGTATAAACACGACCATGTTCCTTTAAATTTGAAATTTTCGAGTTTAAGGGCGCATGAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATGGGGTTTTTGGAAGATAAAACTGTGAAATTTAAATTTACCACAAAATTTGCTTTCAAATGAGTATAAACACGACCATGTTCCTTTAAATTTGAAATTTTCGAGTTTAAGGGCGCATGAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAARTATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38228</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>303216</contig_pos>
        <strand></strand>
        <context>tatattcatt[A/T]gaaagctctt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATT</left_flank>
        <right_flank>GAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCCAGACCCAAAATTGATCCCTCATCTTTTCCTTCATAAATGTTATCTCCTTGAAAACCGCCGAATGTCGCGTTGGCGAAATCCACAACTTTGATTCGGACCAGATTTTCGATTGGCGTTGATTCTAGAAGATAAATTGGGATTTTTGTGATTCCAATGGGGTTTTTGGAAGATAAAACTGTGAAATTTAAATTTACCACAAAATTTGCTTTCAAATGAGTATAAACACGACCATGTTCCTTTAAATTTGAAATTTTCGAGTTTAAGGGCGCATGAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTTTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAAT</canonical>
            <polymorphic>TGTCCAGACCCAAAATTGATCCCTCATCTTTTCCTTCATAAATGTTATCTCCTTGAAAACCGCCGAATGTCGCGTTGGCGAAATCCACAACTTTGATTCGGACCAGATTTTCGATTGGCGTTGATTCTAGAAGATAAATTGGGATTTTTGTGATTCCAATGGGGTTTTTGGAAGATAAAACTGTGAAATTTAAATTTACCACAAAATTTGCTTTCAAATGAGTATAAACACGACCATGTTCCTTTAAATTTGAAATTTTCGAGTTTAAGGGCGCATGAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTWGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTTTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGGGGTTTTTGGAAGATAA</pcr_primer_p1>
		<pcr_primer_p2>AAACATTTTTAAGGGCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>747</pcr_amplicon_size>
		<canonical_amplicon>ATGGGGTTTTTGGAAGATAAAACTGTGAAATTTAAATTTACCACAAAATTTGCTTTCAAATGAGTATAAACACGACCATGTTCCTTTAAATTTGAAATTTTCGAGTTTAAGGGCGCATGAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATGGGGTTTTTGGAAGATAAAACTGTGAAATTTAAATTTACCACAAAATTTGCTTTCAAATGAGTATAAACACGACCATGTTCCTTTAAATTTGAAATTTTCGAGTTTAAGGGCGCATGAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTWGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38229</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>303285</contig_pos>
        <strand></strand>
        <context>tgaacgagtt[A/G]craaatgttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTT</left_flank>
        <right_flank>CAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGCGTTGGCGAAATCCACAACTTTGATTCGGACCAGATTTTCGATTGGCGTTGATTCTAGAAGATAAATTGGGATTTTTGTGATTCCAATGGGGTTTTTGGAAGATAAAACTGTGAAATTTAAATTTACCACAAAATTTGCTTTCAAATGAGTATAAACACGACCATGTTCCTTTAAATTTGAAATTTTCGAGTTTAAGGGCGCATGAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTTTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCATAATCACCTTTGATTTCACTCTCAATAACAATGAGTAAACTGGCTCCAAACAGTCGAACCCTTTCGG</canonical>
            <polymorphic>TCGCGTTGGCGAAATCCACAACTTTGATTCGGACCAGATTTTCGATTGGCGTTGATTCTAGAAGATAAATTGGGATTTTTGTGATTCCAATGGGGTTTTTGGAAGATAAAACTGTGAAATTTAAATTTACCACAAAATTTGCTTTCAAATGAGTATAAACACGACCATGTTCCTTTAAATTTGAAATTTTCGAGTTTAAGGGCGCATGAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTRCAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTTTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCATAATCACCTTTGATTTCACTCTCAATAACAATGAGTAAACTGGCTCCAAACAGTCGAACCCTTTCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>454 334 162 50</canonical_bands>
                <polymorphic_bands>454 334 212</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGGGGTTTTTGGAAGATAA</pcr_primer_p1>
		<pcr_primer_p2>AAACATTTTTAAGGGCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>747</pcr_amplicon_size>
		<canonical_amplicon>ATGGGGTTTTTGGAAGATAAAACTGTGAAATTTAAATTTACCACAAAATTTGCTTTCAAATGAGTATAAACACGACCATGTTCCTTTAAATTTGAAATTTTCGAGTTTAAGGGCGCATGAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATGGGGTTTTTGGAAGATAAAACTGTGAAATTTAAATTTACCACAAAATTTGCTTTCAAATGAGTATAAACACGACCATGTTCCTTTAAATTTGAAATTTTCGAGTTTAAGGGCGCATGAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTRCAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38230</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>303287</contig_pos>
        <strand></strand>
        <context>aacgagttrc[A/G]aaatgtttga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTAC</left_flank>
        <right_flank>AAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGTTGGCGAAATCCACAACTTTGATTCGGACCAGATTTTCGATTGGCGTTGATTCTAGAAGATAAATTGGGATTTTTGTGATTCCAATGGGGTTTTTGGAAGATAAAACTGTGAAATTTAAATTTACCACAAAATTTGCTTTCAAATGAGTATAAACACGACCATGTTCCTTTAAATTTGAAATTTTCGAGTTTAAGGGCGCATGAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTTTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCATAATCACCTTTGATTTCACTCTCAATAACAATGAGTAAACTGGCTCCAAACAGTCGAACCCTTTCGGTG</canonical>
            <polymorphic>GCGTTGGCGAAATCCACAACTTTGATTCGGACCAGATTTTCGATTGGCGTTGATTCTAGAAGATAAATTGGGATTTTTGTGATTCCAATGGGGTTTTTGGAAGATAAAACTGTGAAATTTAAATTTACCACAAAATTTGCTTTCAAATGAGTATAAACACGACCATGTTCCTTTAAATTTGAAATTTTCGAGTTTAAGGGCGCATGAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACRAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTTTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCATAATCACCTTTGATTTCACTCTCAATAACAATGAGTAAACTGGCTCCAAACAGTCGAACCCTTTCGGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGGGGTTTTTGGAAGATAA</pcr_primer_p1>
		<pcr_primer_p2>AAACATTTTTAAGGGCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>747</pcr_amplicon_size>
		<canonical_amplicon>ATGGGGTTTTTGGAAGATAAAACTGTGAAATTTAAATTTACCACAAAATTTGCTTTCAAATGAGTATAAACACGACCATGTTCCTTTAAATTTGAAATTTTCGAGTTTAAGGGCGCATGAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATGGGGTTTTTGGAAGATAAAACTGTGAAATTTAAATTTACCACAAAATTTGCTTTCAAATGAGTATAAACACGACCATGTTCCTTTAAATTTGAAATTTTCGAGTTTAAGGGCGCATGAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACRAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38231</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>303319</contig_pos>
        <strand></strand>
        <context>tttaagaaaa[C/T]grtagaacta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAA</left_flank>
        <right_flank>GGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGATTTTCGATTGGCGTTGATTCTAGAAGATAAATTGGGATTTTTGTGATTCCAATGGGGTTTTTGGAAGATAAAACTGTGAAATTTAAATTTACCACAAAATTTGCTTTCAAATGAGTATAAACACGACCATGTTCCTTTAAATTTGAAATTTTCGAGTTTAAGGGCGCATGAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTTTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCATAATCACCTTTGATTTCACTCTCAATAACAATGAGTAAACTGGCTCCAAACAGTCGAACCCTTTCGGTGTCGTTTAGCACACCTCGAATCGCCAATAATTT</canonical>
            <polymorphic>CAGATTTTCGATTGGCGTTGATTCTAGAAGATAAATTGGGATTTTTGTGATTCCAATGGGGTTTTTGGAAGATAAAACTGTGAAATTTAAATTTACCACAAAATTTGCTTTCAAATGAGTATAAACACGACCATGTTCCTTTAAATTTGAAATTTTCGAGTTTAAGGGCGCATGAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAAYGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTTTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCATAATCACCTTTGATTTCACTCTCAATAACAATGAGTAAACTGGCTCCAAACAGTCGAACCCTTTCGGTGTCGTTTAGCACACCTCGAATCGCCAATAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>439 227 195 79 49 11</canonical_bands>
                <polymorphic_bands>439 227 206 79 49</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGGGGTTTTTGGAAGATAA</pcr_primer_p1>
		<pcr_primer_p2>AAACATTTTTAAGGGCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>747</pcr_amplicon_size>
		<canonical_amplicon>ATGGGGTTTTTGGAAGATAAAACTGTGAAATTTAAATTTACCACAAAATTTGCTTTCAAATGAGTATAAACACGACCATGTTCCTTTAAATTTGAAATTTTCGAGTTTAAGGGCGCATGAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATGGGGTTTTTGGAAGATAAAACTGTGAAATTTAAATTTACCACAAAATTTGCTTTCAAATGAGTATAAACACGACCATGTTCCTTTAAATTTGAAATTTTCGAGTTTAAGGGCGCATGAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAAYGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38232</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>303321</contig_pos>
        <strand></strand>
        <context>taagaaaayg[G/A]tagaactacc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACG</left_flank>
        <right_flank>TAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTTCGATTGGCGTTGATTCTAGAAGATAAATTGGGATTTTTGTGATTCCAATGGGGTTTTTGGAAGATAAAACTGTGAAATTTAAATTTACCACAAAATTTGCTTTCAAATGAGTATAAACACGACCATGTTCCTTTAAATTTGAAATTTTCGAGTTTAAGGGCGCATGAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTTTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCATAATCACCTTTGATTTCACTCTCAATAACAATGAGTAAACTGGCTCCAAACAGTCGAACCCTTTCGGTGTCGTTTAGCACACCTCGAATCGCCAATAATTTCG</canonical>
            <polymorphic>GATTTTCGATTGGCGTTGATTCTAGAAGATAAATTGGGATTTTTGTGATTCCAATGGGGTTTTTGGAAGATAAAACTGTGAAATTTAAATTTACCACAAAATTTGCTTTCAAATGAGTATAAACACGACCATGTTCCTTTAAATTTGAAATTTTCGAGTTTAAGGGCGCATGAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGRTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTTTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCATAATCACCTTTGATTTCACTCTCAATAACAATGAGTAAACTGGCTCCAAACAGTCGAACCCTTTCGGTGTCGTTTAGCACACCTCGAATCGCCAATAATTTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>439 227 195 77 51 11</canonical_bands>
                <polymorphic_bands>439 227 206 77 51</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGGGGTTTTTGGAAGATAA</pcr_primer_p1>
		<pcr_primer_p2>AAACATTTTTAAGGGCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>747</pcr_amplicon_size>
		<canonical_amplicon>ATGGGGTTTTTGGAAGATAAAACTGTGAAATTTAAATTTACCACAAAATTTGCTTTCAAATGAGTATAAACACGACCATGTTCCTTTAAATTTGAAATTTTCGAGTTTAAGGGCGCATGAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>ATGGGGTTTTTGGAAGATAAAACTGTGAAATTTAAATTTACCACAAAATTTGCTTTCAAATGAGTATAAACACGACCATGTTCCTTTAAATTTGAAATTTTCGAGTTTAAGGGCGCATGAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGRTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38233</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>303412</contig_pos>
        <strand></strand>
        <context>aaatgagtat[A/T]aacaagccca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTAT</left_flank>
        <right_flank>AACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACCACAAAATTTGCTTTCAAATGAGTATAAACACGACCATGTTCCTTTAAATTTGAAATTTTCGAGTTTAAGGGCGCATGAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTTTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCATAATCACCTTTGATTTCACTCTCAATAACAATGAGTAAACTGGCTCCAAACAGTCGAACCCTTTCGGTGTCGTTTAGCACACCTCGAATCGCCAATAATTTCGTTTGTACCAATTCCAAAACATTTTCAGGAACATCAAAAAATTGTTGAAGTGCTAGAAACAATTCAATTTTTCCCATTTGTCGTCCCTCATA</canonical>
            <polymorphic>TACCACAAAATTTGCTTTCAAATGAGTATAAACACGACCATGTTCCTTTAAATTTGAAATTTTCGAGTTTAAGGGCGCATGAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATWAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTTTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCATAATCACCTTTGATTTCACTCTCAATAACAATGAGTAAACTGGCTCCAAACAGTCGAACCCTTTCGGTGTCGTTTAGCACACCTCGAATCGCCAATAATTTCGTTTGTACCAATTCCAAAACATTTTCAGGAACATCAAAAAATTGTTGAAGTGCTAGAAACAATTCAATTTTTCCCATTTGTCGTCCCTCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGGGGTTTTTGGAAGATAA</pcr_primer_p1>
		<pcr_primer_p2>AAACATTTTTAAGGGCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>747</pcr_amplicon_size>
		<canonical_amplicon>TAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>TWAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38234</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>303455</contig_pos>
        <strand></strand>
        <context>cgatttaaag[G/A]cgcatagggg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAG</left_flank>
        <right_flank>CGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTTTAAATTTGAAATTTTCGAGTTTAAGGGCGCATGAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTTTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCATAATCACCTTTGATTTCACTCTCAATAACAATGAGTAAACTGGCTCCAAACAGTCGAACCCTTTCGGTGTCGTTTAGCACACCTCGAATCGCCAATAATTTCGTTTGTACCAATTCCAAAACATTTTCAGGAACATCAAAAAATTGTTGAAGTGCTAGAAACAATTCAATTTTTCCCATTTGTCGTCCCTCATACTTATTGATTGAAATTTGATTTTGAGACTCGGATGGCGGACGT</canonical>
            <polymorphic>TCCTTTAAATTTGAAATTTTCGAGTTTAAGGGCGCATGAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGRCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTTTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCATAATCACCTTTGATTTCACTCTCAATAACAATGAGTAAACTGGCTCCAAACAGTCGAACCCTTTCGGTGTCGTTTAGCACACCTCGAATCGCCAATAATTTCGTTTGTACCAATTCCAAAACATTTTCAGGAACATCAAAAAATTGTTGAAGTGCTAGAAACAATTCAATTTTTCCCATTTGTCGTCCCTCATACTTATTGATTGAAATTTGATTTTGAGACTCGGATGGCGGACGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>498 295 101 72 34</canonical_bands>
                <polymorphic_bands>793 101 72 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGGGGTTTTTGGAAGATAA</pcr_primer_p1>
		<pcr_primer_p2>AAACATTTTTAAGGGCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>747</pcr_amplicon_size>
		<canonical_amplicon>GGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GRCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38235</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>303492</contig_pos>
        <strand></strand>
        <context>tttctagaag[C/G]tggccatgat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAG</left_flank>
        <right_flank>TGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTTTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCATAATCACCTTTGATTTCACTCTCAATAACAATGAGTAAACTGGCTCCAAACAGTCGAACCCTTTCGGTGTCGTTTAGCACACCTCGAATCGCCAATAATTTCGTTTGTACCAATTCCAAAACATTTTCAGGAACATCAAAAAATTGTTGAAGTGCTAGAAACAATTCAATTTTTCCCATTTGTCGTCCCTCATACTTATTGATTGAAATTTGATTTTGAGACTCGGATGGCGGACGTTTCATTCCGCATAATCTGAAAAATTATTTTTTTTTTT</canonical>
            <polymorphic>GAGCCGCGTGGGGGAGGCAAAATTTCAAAATCTTGGAAAGTAGGTCATGTTTATACTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGSTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTTTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCATAATCACCTTTGATTTCACTCTCAATAACAATGAGTAAACTGGCTCCAAACAGTCGAACCCTTTCGGTGTCGTTTAGCACACCTCGAATCGCCAATAATTTCGTTTGTACCAATTCCAAAACATTTTCAGGAACATCAAAAAATTGTTGAAGTGCTAGAAACAATTCAATTTTTCCCATTTGTCGTCCCTCATACTTATTGATTGAAATTTGATTTTGAGACTCGGATGGCGGACGTTTCATTCCGCATAATCTGAAAAATTATTTTTTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>413 229 175 95 61 27</canonical_bands>
                <polymorphic_bands>413 229 175 122 61</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>231 226 182 175 73 61 23 22 4 3</canonical_bands>
                <polymorphic_bands>231 226 182 175 77 61 23 22 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGGGGTTTTTGGAAGATAA</pcr_primer_p1>
		<pcr_primer_p2>AAACATTTTTAAGGGCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>747</pcr_amplicon_size>
		<canonical_amplicon>GCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>GSTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38236</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>303547</contig_pos>
        <strand></strand>
        <context>gaatgctgta[T/C]ttttcatraa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTA</left_flank>
        <right_flank>TTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTTTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCATAATCACCTTTGATTTCACTCTCAATAACAATGAGTAAACTGGCTCCAAACAGTCGAACCCTTTCGGTGTCGTTTAGCACACCTCGAATCGCCAATAATTTCGTTTGTACCAATTCCAAAACATTTTCAGGAACATCAAAAAATTGTTGAAGTGCTAGAAACAATTCAATTTTTCCCATTTGTCGTCCCTCATACTTATTGATTGAAATTTGATTTTGAGACTCGGATGGCGGACGTTTCATTCCGCATAATCTGAAAAATTATTTTTTTTTTTGGAATTTCGAAATCACAAATAGTTACCGTATCCCGAGAGCTGCAGACGTAGTCGA</canonical>
            <polymorphic>CTTATTTTTAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTAYTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTTTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCATAATCACCTTTGATTTCACTCTCAATAACAATGAGTAAACTGGCTCCAAACAGTCGAACCCTTTCGGTGTCGTTTAGCACACCTCGAATCGCCAATAATTTCGTTTGTACCAATTCCAAAACATTTTCAGGAACATCAAAAAATTGTTGAAGTGCTAGAAACAATTCAATTTTTCCCATTTGTCGTCCCTCATACTTATTGATTGAAATTTGATTTTGAGACTCGGATGGCGGACGTTTCATTCCGCATAATCTGAAAAATTATTTTTTTTTTTGGAATTTCGAAATCACAAATAGTTACCGTATCCCGAGAGCTGCAGACGTAGTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGGGGTTTTTGGAAGATAA</pcr_primer_p1>
		<pcr_primer_p2>AAACATTTTTAAGGGCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>747</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>AYTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38237</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>303555</contig_pos>
        <strand></strand>
        <context>tayttttcat[A/G]aaaattgagc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCAT</left_flank>
        <right_flank>AAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTTTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCATAATCACCTTTGATTTCACTCTCAATAACAATGAGTAAACTGGCTCCAAACAGTCGAACCCTTTCGGTGTCGTTTAGCACACCTCGAATCGCCAATAATTTCGTTTGTACCAATTCCAAAACATTTTCAGGAACATCAAAAAATTGTTGAAGTGCTAGAAACAATTCAATTTTTCCCATTTGTCGTCCCTCATACTTATTGATTGAAATTTGATTTTGAGACTCGGATGGCGGACGTTTCATTCCGCATAATCTGAAAAATTATTTTTTTTTTTGGAATTTCGAAATCACAAATAGTTACCGTATCCCGAGAGCTGCAGACGTAGTCGATTGACACT</canonical>
            <polymorphic>TAAGCGCTTGACATGTGAAATGCAATGATGTTAAAATTTTTGATTTTGAATAAAAATTAAGCGAGTTACGGTAGTTTTCAACTTTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATRAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTTTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCATAATCACCTTTGATTTCACTCTCAATAACAATGAGTAAACTGGCTCCAAACAGTCGAACCCTTTCGGTGTCGTTTAGCACACCTCGAATCGCCAATAATTTCGTTTGTACCAATTCCAAAACATTTTCAGGAACATCAAAAAATTGTTGAAGTGCTAGAAACAATTCAATTTTTCCCATTTGTCGTCCCTCATACTTATTGATTGAAATTTGATTTTGAGACTCGGATGGCGGACGTTTCATTCCGCATAATCTGAAAAATTATTTTTTTTTTTGGAATTTCGAAATCACAAATAGTTACCGTATCCCGAGAGCTGCAGACGTAGTCGATTGACACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGGGGTTTTTGGAAGATAA</pcr_primer_p1>
		<pcr_primer_p2>AAACATTTTTAAGGGCATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>747</pcr_amplicon_size>
		<canonical_amplicon>TAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>TRAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38238</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>303638</contig_pos>
        <strand>+</strand>
        <context>TTTTAAACCA[C/T]CATATCTCGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTTGAAAGTTTTTAAACCA</left_flank>
        <right_flank>CATATCTCGGTTAGTTTTTAATCGATTTTTAACACATTATGCTCAAAAAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTTTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCATAATCACCTTTGATTTCACTCTCAATAACAATGAGTAAACTGGCTCCAAACAGTCGAACCCTTTCGGTGTCGTTTAGCACACCTCGAATCGCCAATAATTTCGTTTGTACCAATTCCAAAACATTTTCAGGAACATCAAAAAATTGTTGAAGTGCTAGAAACAATTCAATTTTTCCCATTTGTCGTCCCTCATACTTATTGATTGAAATTTGATTTTGAGACTCGGATGGCGGACGTTTCATTCCGCATAATCTGAAAAATTATTTTTTTTTTTGGAATTTCGAAATCACAAATAGTTACCGTATCCCGAGAGCTGCAGACGTAGTCGATTGACACTTCGCAGTCATACATGCAATTTTGGCTACTGTAGCTTGATCGCCGTGTTGACGAGTTCCCAATTTCAGGTCCAAAATTCGAGGA</canonical>
            <polymorphic>TTGCAAATATCGACTTTAAAGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTTGAAAGTTTTTAAACCAYCATATCTCGGTTAGTTTTTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCATAATCACCTTTGATTTCACTCTCAATAACAATGAGTAAACTGGCTCCAAACAGTCGAACCCTTTCGGTGTCGTTTAGCACACCTCGAATCGCCAATAATTTCGTTTGTACCAATTCCAAAACATTTTCAGGAACATCAAAAAATTGTTGAAGTGCTAGAAACAATTCAATTTTTCCCATTTGTCGTCCCTCATACTTATTGATTGAAATTTGATTTTGAGACTCGGATGGCGGACGTTTCATTCCGCATAATCTGAAAAATTATTTTTTTTTTTGGAATTTCGAAATCACAAATAGTTACCGTATCCCGAGAGCTGCAGACGTAGTCGATTGACACTTCGCAGTCATACATGCAATTTTGGCTACTGTAGCTTGATCGCCGTGTTGACGAGTTCCCAATTTCAGGTCCAAAATTCGAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>506 475 19</canonical_bands>
                <polymorphic_bands>981 19</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>214 177 135 73 60 52 51 48 48 46 37 35 12 10 2</canonical_bands>
                <polymorphic_bands>214 177 135 95 73 52 51 48 48 46 37 12 10 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGGGGTTTTTGGAAGATAA</pcr_primer_p1>
		<pcr_primer_p2>GGTGATTATGATTTTTGGAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>852</pcr_amplicon_size>
		<canonical_amplicon>ACCATATCTCGGTTAGTTTTTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCATAATCACC</canonical_amplicon>
		<polymorphic_amplicon>AYCATATCTCGGTTAGTTTTTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCATAATCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38239</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>303657</contig_pos>
        <strand>+</strand>
        <context>GGTTAGTTTT[C/T]AATCGATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTT</left_flank>
        <right_flank>AATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAAC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTTTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCATAATCACCTTTGATTTCACTCTCAATAACAATGAGTAAACTGGCTCCAAACAGTCGAACCCTTTCGGTGTCGTTTAGCACACCTCGAATCGCCAATAATTTCGTTTGTACCAATTCCAAAACATTTTCAGGAACATCAAAAAATTGTTGAAGTGCTAGAAACAATTCAATTTTTCCCATTTGTCGTCCCTCATACTTATTGATTGAAATTTGATTTTGAGACTCGGATGGCGGACGTTTCATTCCGCATAATCTGAAAAATTATTTTTTTTTTTGGAATTTCGAAATCACAAATAGTTACCGTATCCCGAGAGCTGCAGACGTAGTCGATTGACACTTCGCAGTCATACATGCAATTTTGGCTACTGTAGCTTGATCGCCGTGTTGACGAGTTCCCAATTTCAGGTCCAAAATTCGAGGAGACTTCATACGGTACGTCA</canonical>
            <polymorphic>AGGCGCATAAGGGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTTYAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCATAATCACCTTTGATTTCACTCTCAATAACAATGAGTAAACTGGCTCCAAACAGTCGAACCCTTTCGGTGTCGTTTAGCACACCTCGAATCGCCAATAATTTCGTTTGTACCAATTCCAAAACATTTTCAGGAACATCAAAAAATTGTTGAAGTGCTAGAAACAATTCAATTTTTCCCATTTGTCGTCCCTCATACTTATTGATTGAAATTTGATTTTGAGACTCGGATGGCGGACGTTTCATTCCGCATAATCTGAAAAATTATTTTTTTTTTTGGAATTTCGAAATCACAAATAGTTACCGTATCCCGAGAGCTGCAGACGTAGTCGATTGACACTTCGCAGTCATACATGCAATTTTGGCTACTGTAGCTTGATCGCCGTGTTGACGAGTTCCCAATTTCAGGTCCAAAATTCGAGGAGACTTCATACGGTACGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>490 161 68 63 57 47 38 26 20 19 11</canonical_bands>
                <polymorphic_bands>490 161 68 63 57 47 38 37 20 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGGGGTTTTTGGAAGATAA</pcr_primer_p1>
		<pcr_primer_p2>GGTGATTATGATTTTTGGAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>852</pcr_amplicon_size>
		<canonical_amplicon>TTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCATAATCACC</canonical_amplicon>
		<polymorphic_amplicon>TYAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCATAATCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38240</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>303668</contig_pos>
        <strand>+</strand>
        <context>AATCGATTTT[C/T]AACACATTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTTTAATCGATTTT</left_flank>
        <right_flank>AACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTTTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCATAATCACCTTTGATTTCACTCTCAATAACAATGAGTAAACTGGCTCCAAACAGTCGAACCCTTTCGGTGTCGTTTAGCACACCTCGAATCGCCAATAATTTCGTTTGTACCAATTCCAAAACATTTTCAGGAACATCAAAAAATTGTTGAAGTGCTAGAAACAATTCAATTTTTCCCATTTGTCGTCCCTCATACTTATTGATTGAAATTTGATTTTGAGACTCGGATGGCGGACGTTTCATTCCGCATAATCTGAAAAATTATTTTTTTTTTTGGAATTTCGAAATCACAAATAGTTACCGTATCCCGAGAGCTGCAGACGTAGTCGATTGACACTTCGCAGTCATACATGCAATTTTGGCTACTGTAGCTTGATCGCCGTGTTGACGAGTTCCCAATTTCAGGTCCAAAATTCGAGGAGACTTCATACGGTACGTCAAATCGGACAAG</canonical>
            <polymorphic>GGGTCGGAAATCGAAATGTTGTAAAGTAGGTCATGATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTTTAATCGATTTTYAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCATAATCACCTTTGATTTCACTCTCAATAACAATGAGTAAACTGGCTCCAAACAGTCGAACCCTTTCGGTGTCGTTTAGCACACCTCGAATCGCCAATAATTTCGTTTGTACCAATTCCAAAACATTTTCAGGAACATCAAAAAATTGTTGAAGTGCTAGAAACAATTCAATTTTTCCCATTTGTCGTCCCTCATACTTATTGATTGAAATTTGATTTTGAGACTCGGATGGCGGACGTTTCATTCCGCATAATCTGAAAAATTATTTTTTTTTTTGGAATTTCGAAATCACAAATAGTTACCGTATCCCGAGAGCTGCAGACGTAGTCGATTGACACTTCGCAGTCATACATGCAATTTTGGCTACTGTAGCTTGATCGCCGTGTTGACGAGTTCCCAATTTCAGGTCCAAAATTCGAGGAGACTTCATACGGTACGTCAAATCGGACAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>501 161 63 57 57 47 38 26 20 19 11</canonical_bands>
                <polymorphic_bands>512 161 63 57 57 47 38 26 20 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCTTAAAAATGTTTGAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGATGTTCCTGAAAATGT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTTTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCATAATCACCTTTGATTTCACTCTCAATAACAATGAGTAAACTGGCTCCAAACAGTCGAACCCTTTCGGTGTCGTTTAGCACACCTCGAATCGCCAATAATTTCGTTTGTACCAATTCCAAAACATTTTCAGGAACATCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTTTAATCGATTTTYAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCATAATCACCTTTGATTTCACTCTCAATAACAATGAGTAAACTGGCTCCAAACAGTCGAACCCTTTCGGTGTCGTTTAGCACACCTCGAATCGCCAATAATTTCGTTTGTACCAATTCCAAAACATTTTCAGGAACATCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38241</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>303703</contig_pos>
        <strand>+</strand>
        <context>AAATTTCATC[C/T]TAACTCCAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATC</left_flank>
        <right_flank>TAACTCCAAAAATCATAATCACCTTTGATTTCACTCTCAATAACAATGAG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTTTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCATAATCACCTTTGATTTCACTCTCAATAACAATGAGTAAACTGGCTCCAAACAGTCGAACCCTTTCGGTGTCGTTTAGCACACCTCGAATCGCCAATAATTTCGTTTGTACCAATTCCAAAACATTTTCAGGAACATCAAAAAATTGTTGAAGTGCTAGAAACAATTCAATTTTTCCCATTTGTCGTCCCTCATACTTATTGATTGAAATTTGATTTTGAGACTCGGATGGCGGACGTTTCATTCCGCATAATCTGAAAAATTATTTTTTTTTTTGGAATTTCGAAATCACAAATAGTTACCGTATCCCGAGAGCTGCAGACGTAGTCGATTGACACTTCGCAGTCATACATGCAATTTTGGCTACTGTAGCTTGATCGCCGTGTTGACGAGTTCCCAATTTCAGGTCCAAAATTCGAGGAGACTTCATACGGTACGTCAAATCGGACAAGACAATGAAGTTTCTGGAATTTGCTATGTTTTAGTA</canonical>
            <polymorphic>ATTATATTCATTAGAAAGCTCTTAACGTCAGCAATACGAAACTATCAAAGTATTTGAATTTAAACTAAAACTGAACGAGTTACAAAATGTTTGAACATGTTTTACTTTAAGAAAACGGTAGAACTACCGTAACTCTGTCAGTTTTCGCACAAACTGCGGAATTTTAAAAATTTCTTGTTTTTTAGATAAAAAGCTTCAAAATGAGTATAAACAAGCCCATGTTCCTTTAAATTTGAAATTTCGATTTAAAGGCGCATAGGGGGTCTGAAGTTCGAAATTTTCTAGAAGCTGGCCATGATTATACTCATTTTGAAGCTCTGAACGTGCCAAATTGAATGCTGTATTTTTCATAAAAATTGAGCAACAACTAAGTGAGCTATAGATCAAAAAAAAAGAAAAAATGCCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTTTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCYTAACTCCAAAAATCATAATCACCTTTGATTTCACTCTCAATAACAATGAGTAAACTGGCTCCAAACAGTCGAACCCTTTCGGTGTCGTTTAGCACACCTCGAATCGCCAATAATTTCGTTTGTACCAATTCCAAAACATTTTCAGGAACATCAAAAAATTGTTGAAGTGCTAGAAACAATTCAATTTTTCCCATTTGTCGTCCCTCATACTTATTGATTGAAATTTGATTTTGAGACTCGGATGGCGGACGTTTCATTCCGCATAATCTGAAAAATTATTTTTTTTTTTGGAATTTCGAAATCACAAATAGTTACCGTATCCCGAGAGCTGCAGACGTAGTCGATTGACACTTCGCAGTCATACATGCAATTTTGGCTACTGTAGCTTGATCGCCGTGTTGACGAGTTCCCAATTTCAGGTCCAAAATTCGAGGAGACTTCATACGGTACGTCAAATCGGACAAGACAATGAAGTTTCTGGAATTTGCTATGTTTTAGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCTTAAAAATGTTTGAAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGATGTTCCTGAAAATGT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTTTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCCTAACTCCAAAAATCATAATCACCTTTGATTTCACTCTCAATAACAATGAGTAAACTGGCTCCAAACAGTCGAACCCTTTCGGTGTCGTTTAGCACACCTCGAATCGCCAATAATTTCGTTTGTACCAATTCCAAAACATTTTCAGGAACATCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>CCCTTAAAAATGTTTGAAAGTTTTTAAACCACCATATCTCGGTTAGTTTTTAATCGATTTTTAACACATTATGCTCAAAAAATAGCAAATTTCATCYTAACTCCAAAAATCATAATCACCTTTGATTTCACTCTCAATAACAATGAGTAAACTGGCTCCAAACAGTCGAACCCTTTCGGTGTCGTTTAGCACACCTCGAATCGCCAATAATTTCGTTTGTACCAATTCCAAAACATTTTCAGGAACATCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38242</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>429917</contig_pos>
        <strand></strand>
        <context>tcaatgcgaa[T/A]ttcggattta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAA</left_flank>
        <right_flank>TTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAACCCCGGAAATTGTGAAAAATTCGAAAATTGAGCTAGGAGCTCTAACAAAAAACATTCTAGGCTAGCTTTTTGTGCTAATTCTGATTCTAGCGTTAGATTTTAAGAATTGCAGATTTTTGTCTGAAAATTTTCTGAAAATCTGAAAATTTCTGAAAAATTACGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGA</canonical>
            <polymorphic>GTAACCCCGGAAATTGTGAAAAATTCGAAAATTGAGCTAGGAGCTCTAACAAAAAACATTCTAGGCTAGCTTTTTGTGCTAATTCTGATTCTAGCGTTAGATTTTAAGAATTGCAGATTTTTGTCTGAAAATTTTCTGAAAATCTGAAAATTTCTGAAAAATTACGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAAWTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>212 177 126 108 101 93 69 54 21 19 10 10</canonical_bands>
                <polymorphic_bands>278 212 126 108 93 69 54 21 19 10 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>212 169 101 80 79 54 51 38 31 28 27 21 19 14 11 11 10 10 10 8 8 8</canonical_bands>
                <polymorphic_bands>270 212 80 79 54 51 38 31 28 27 21 19 14 11 11 10 10 10 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGAAAATTGAGATTGAGAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGGGTTACTGTAGCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>984</pcr_amplicon_size>
		<canonical_amplicon>ATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AWTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38243</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>429954</contig_pos>
        <strand></strand>
        <context>ctaggaacca[T/C]tttycagccm</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCA</left_flank>
        <right_flank>TTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGAGCTCTAACAAAAAACATTCTAGGCTAGCTTTTTGTGCTAATTCTGATTCTAGCGTTAGATTTTAAGAATTGCAGATTTTTGTCTGAAAATTTTCTGAAAATCTGAAAATTTCTGAAAAATTACGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCC</canonical>
            <polymorphic>TAGGAGCTCTAACAAAAAACATTCTAGGCTAGCTTTTTGTGCTAATTCTGATTCTAGCGTTAGATTTTAAGAATTGCAGATTTTTGTCTGAAAATTTTCTGAAAATCTGAAAATTTCTGAAAAATTACGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCAYTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGAAAATTGAGATTGAGAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGGGTTACTGTAGCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>984</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AYTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38244</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>429958</contig_pos>
        <strand></strand>
        <context>gaaccayttt[T/C]cagccmtcta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTT</left_flank>
        <right_flank>CAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTCTAACAAAAAACATTCTAGGCTAGCTTTTTGTGCTAATTCTGATTCTAGCGTTAGATTTTAAGAATTGCAGATTTTTGTCTGAAAATTTTCTGAAAATCTGAAAATTTCTGAAAAATTACGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTT</canonical>
            <polymorphic>AGCTCTAACAAAAAACATTCTAGGCTAGCTTTTTGTGCTAATTCTGATTCTAGCGTTAGATTTTAAGAATTGCAGATTTTTGTCTGAAAATTTTCTGAAAATCTGAAAATTTCTGAAAAATTACGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTYCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGAAAATTGAGATTGAGAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGGGTTACTGTAGCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>984</pcr_amplicon_size>
		<canonical_amplicon>TTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TYCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38245</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>429964</contig_pos>
        <strand></strand>
        <context>ytttycagcc[C/A]tctagctctc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCC</left_flank>
        <right_flank>TCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAG</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAAAAAACATTCTAGGCTAGCTTTTTGTGCTAATTCTGATTCTAGCGTTAGATTTTAAGAATTGCAGATTTTTGTCTGAAAATTTTCTGAAAATCTGAAAATTTCTGAAAAATTACGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTG</canonical>
            <polymorphic>AACAAAAAACATTCTAGGCTAGCTTTTTGTGCTAATTCTGATTCTAGCGTTAGATTTTAAGAATTGCAGATTTTTGTCTGAAAATTTTCTGAAAATCTGAAAATTTCTGAAAAATTACGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCMTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGAAAATTGAGATTGAGAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGGGTTACTGTAGCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>984</pcr_amplicon_size>
		<canonical_amplicon>CCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CMTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38246</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>429998</contig_pos>
        <strand>+</strand>
        <context>gtacttttgg[A/G]grtacagtaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGG</left_flank>
        <right_flank>GCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCTGATTCTAGCGTTAGATTTTAAGAATTGCAGATTTTTGTCTGAAAATTTTCTGAAAATCTGAAAATTTCTGAAAAATTACGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTC</canonical>
            <polymorphic>ATTCTGATTCTAGCGTTAGATTTTAAGAATTGCAGATTTTTGTCTGAAAATTTTCTGAAAATCTGAAAATTTCTGAAAAATTACGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGRGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>359 221 114 82 70 41 30 30 28 10 8 7</canonical_bands>
                <polymorphic_bands>359 251 114 82 70 41 30 28 10 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>196 181 114 62 60 51 41 40 39 38 35 30 30 22 20 10 8 8 8 7</canonical_bands>
                <polymorphic_bands>196 181 114 70 62 60 51 41 39 38 35 30 22 20 10 8 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGAAAATTGAGATTGAGAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGGGTTACTGTAGCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>984</pcr_amplicon_size>
		<canonical_amplicon>GAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>GAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38247</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>430000</contig_pos>
        <strand>+</strand>
        <context>acttttggrg[A/G]tacagtaatc</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAG</left_flank>
        <right_flank>TACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGATTCTAGCGTTAGATTTTAAGAATTGCAGATTTTTGTCTGAAAATTTTCTGAAAATCTGAAAATTTCTGAAAAATTACGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAA</canonical>
            <polymorphic>TCTGATTCTAGCGTTAGATTTTAAGAATTGCAGATTTTTGTCTGAAAATTTTCTGAAAATCTGAAAATTTCTGAAAAATTACGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGRTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>359 221 112 82 70 41 30 30 28 12 8 7</canonical_bands>
                <polymorphic_bands>359 221 112 82 71 70 30 28 12 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>287 213 187 130 101 82</canonical_bands>
                <polymorphic_bands>417 213 187 101 82</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>196 181 112 62 60 51 41 40 39 38 35 30 30 22 20 12 8 8 8 7</canonical_bands>
                <polymorphic_bands>196 181 112 71 62 60 51 40 39 38 35 30 22 20 12 8 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGAAAATTGAGATTGAGAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGGGTTACTGTAGCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>984</pcr_amplicon_size>
		<canonical_amplicon>GCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>GRTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38248</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>430013</contig_pos>
        <strand>+</strand>
        <context>cagtaatccc[A/C]gaaattckga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCC</left_flank>
        <right_flank>GAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGATTTTAAGAATTGCAGATTTTTGTCTGAAAATTTTCTGAAAATCTGAAAATTTCTGAAAAATTACGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACAT</canonical>
            <polymorphic>TTAGATTTTAAGAATTGCAGATTTTTGTCTGAAAATTTTCTGAAAATCTGAAAATTTCTGAAAAATTACGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCMGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGAAAATTGAGATTGAGAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGGGTTACTGTAGCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>984</pcr_amplicon_size>
		<canonical_amplicon>CAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CMGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38249</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>430021</contig_pos>
        <strand>+</strand>
        <context>ccmgaaattc[G/T]gaaaaawtca</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTC</left_flank>
        <right_flank>GAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGAATTGCAGATTTTTGTCTGAAAATTTTCTGAAAATCTGAAAATTTCTGAAAAATTACGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTG</canonical>
            <polymorphic>TAAGAATTGCAGATTTTTGTCTGAAAATTTTCTGAAAATCTGAAAATTTCTGAAAAATTACGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCKGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGAAAATTGAGATTGAGAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGGGTTACTGTAGCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>984</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CKGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38250</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>430028</contig_pos>
        <strand>+</strand>
        <context>ttckgaaaaa[A/T]tcaaaaattg</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAA</left_flank>
        <right_flank>TCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCAGATTTTTGTCTGAAAATTTTCTGAAAATCTGAAAATTTCTGAAAAATTACGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCA</canonical>
            <polymorphic>TGCAGATTTTTGTCTGAAAATTTTCTGAAAATCTGAAAATTTCTGAAAAATTACGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAAWTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>323 177 126 101 93 69 54 19 18 10 10</canonical_bands>
                <polymorphic_bands>323 177 136 101 93 69 54 19 18 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>243 169 101 80 79 54 50 38 31 30 27 19 18 14 11 10 10 8 8</canonical_bands>
                <polymorphic_bands>243 169 101 80 79 54 50 38 31 30 27 19 18 18 14 11 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGAAAATTGAGATTGAGAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGGGTTACTGTAGCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>984</pcr_amplicon_size>
		<canonical_amplicon>ATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AWTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38251</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>430049</contig_pos>
        <strand>+</strand>
        <context>agctaggagc[C/T]kkaacaaaar</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGC</left_flank>
        <right_flank>CGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTGAAAATCTGAAAATTTCTGAAAAATTACGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGG</canonical>
            <polymorphic>TTTCTGAAAATCTGAAAATTTCTGAAAAATTACGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCYCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>359 221 82 70 63 61 41 30 30 28 8 7</canonical_bands>
                <polymorphic_bands>359 221 89 70 63 61 41 30 30 28 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 459 41</canonical_bands>
                <polymorphic_bands>959 41</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>500 367 133</canonical_bands>
                <polymorphic_bands>633 367</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>500 326 133 41</canonical_bands>
                <polymorphic_bands>633 326 41</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>196 181 63 62 60 51 41 40 39 38 35 34 30 30 27 22 20 8 8 8 7</canonical_bands>
                <polymorphic_bands>196 181 63 62 60 51 41 40 39 38 35 34 30 30 29 27 20 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>345 214 175 100 84 54 28</canonical_bands>
                <polymorphic_bands>345 314 175 84 54 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGAAAATTGAGATTGAGAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGGGTTACTGTAGCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>984</pcr_amplicon_size>
		<canonical_amplicon>CTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CYCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38252</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>430050</contig_pos>
        <strand>+</strand>
        <context>gctaggagcy[G/T/C]kaacaaaart</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T/C</alleles>
        <left_flank>CTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCT</left_flank>
        <right_flank>GAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTGAAAATCTGAAAATTTCTGAAAAATTACGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGC</canonical>
            <polymorphic>TTCTGAAAATCTGAAAATTTCTGAAAAATTACGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTKGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>499 459 42</canonical_bands>
                <polymorphic_bands>958 42</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>499 368 133</canonical_bands>
                <polymorphic_bands>632 368</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>499 326 133 42</canonical_bands>
                <polymorphic_bands>632 326 42</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>346 214 175 100 83 54 28</canonical_bands>
                <polymorphic_bands>346 314 175 83 54 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGAAAATTGAGATTGAGAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGGGTTACTGTAGCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>984</pcr_amplicon_size>
		<canonical_amplicon>TCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TKGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38253</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>430051</contig_pos>
        <strand>+</strand>
        <context>ctaggagcyk[G/T]aacaaaartg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTC</left_flank>
        <right_flank>AACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGAAAATCTGAAAATTTCTGAAAAATTACGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGCT</canonical>
            <polymorphic>TCTGAAAATCTGAAAATTTCTGAAAAATTACGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCKAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>347 214 175 100 82 54 28</canonical_bands>
                <polymorphic_bands>347 314 175 82 54 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGAAAATTGAGATTGAGAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGGGTTACTGTAGCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>984</pcr_amplicon_size>
		<canonical_amplicon>CGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CKAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38254</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>430059</contig_pos>
        <strand>+</strand>
        <context>ykkaacaaaa[A/G]tgattctagg</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAA</left_flank>
        <right_flank>TGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGAAAATTTCTGAAAAATTACGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGCTATTAACTG</canonical>
            <polymorphic>TCTGAAAATTTCTGAAAAATTACGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAARTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGCTATTAACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>185 145 91 86 79 61 53 52 49 43 41 37 27 25 11 11 4</canonical_bands>
                <polymorphic_bands>185 145 140 91 86 53 52 49 43 41 37 27 25 11 11 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGAAAATTGAGATTGAGAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGGGTTACTGTAGCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>984</pcr_amplicon_size>
		<canonical_amplicon>AGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>ARTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38255</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>430073</contig_pos>
        <strand>+</strand>
        <context>ttctaggcta[A/G]ttttysgwgc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTA</left_flank>
        <right_flank>TTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATTACGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGCTATTAACTGGATCTACGGTGTCG</canonical>
            <polymorphic>AAAAATTACGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTARTTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGCTATTAACTGGATCTACGGTGTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>243 169 101 80 79 75 54 50 38 31 27 14 10 10 8 8 3</canonical_bands>
                <polymorphic_bands>243 169 118 101 79 75 54 50 31 27 14 10 10 8 8 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGAAAATTGAGATTGAGAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGGGTTACTGTAGCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>984</pcr_amplicon_size>
		<canonical_amplicon>AATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>ARTTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38256</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>430078</contig_pos>
        <strand>+</strand>
        <context>ggctartttt[C/T]sgwgcwratt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTT</left_flank>
        <right_flank>GGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGCTATTAACTGGATCTACGGTGTCGATAAT</canonical>
            <polymorphic>TTACGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTYGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGCTATTAACTGGATCTACGGTGTCGATAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>318 181 155 132 100 58 56</canonical_bands>
                <polymorphic_bands>376 181 155 132 100 56</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGAAAATTGAGATTGAGAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGGGTTACTGTAGCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>984</pcr_amplicon_size>
		<canonical_amplicon>TCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TYGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38257</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>430079</contig_pos>
        <strand>+</strand>
        <context>gctartttty[C/G]gwgcwrattt</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTC</left_flank>
        <right_flank>GAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGCTATTAACTGGATCTACGGTGTCGATAATA</canonical>
            <polymorphic>TACGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCSGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGCTATTAACTGGATCTACGGTGTCGATAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGAAAATTGAGATTGAGAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGGGTTACTGTAGCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>984</pcr_amplicon_size>
		<canonical_amplicon>CGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CSGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38258</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>430081</contig_pos>
        <strand>+</strand>
        <context>tarttttysg[A/T]gcwratttct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGG</left_flank>
        <right_flank>GCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGCTATTAACTGGATCTACGGTGTCGATAATATG</canonical>
            <polymorphic>CGAGATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGWGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGCTATTAACTGGATCTACGGTGTCGATAATATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>318 184 152 132 100 58 56</canonical_bands>
                <polymorphic_bands>376 184 152 132 100 56</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGAAAATTGAGATTGAGAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGGGTTACTGTAGCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>984</pcr_amplicon_size>
		<canonical_amplicon>GAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>GWGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38259</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>430084</contig_pos>
        <strand>+</strand>
        <context>ttttysgwgc[A/T]ratttctatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGC</left_flank>
        <right_flank>GATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGCTATTAACTGGATCTACGGTGTCGATAATATGTTG</canonical>
            <polymorphic>GATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCWGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGCTATTAACTGGATCTACGGTGTCGATAATATGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGAAAATTGAGATTGAGAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGGGTTACTGTAGCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>984</pcr_amplicon_size>
		<canonical_amplicon>CAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CWGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38260</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>430085</contig_pos>
        <strand>+</strand>
        <context>tttysgwgcw[A/G]atttctattc</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCA</left_flank>
        <right_flank>ATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGCTATTAACTGGATCTACGGTGTCGATAATATGTTGG</canonical>
            <polymorphic>ATTTTTCAAAGTTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCARATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGCTATTAACTGGATCTACGGTGTCGATAATATGTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGAAAATTGAGATTGAGAG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGGGTTACTGTAGCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>984</pcr_amplicon_size>
		<canonical_amplicon>AGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>ARATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38261</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>430096</contig_pos>
        <strand>+</strand>
        <context>atttctattc[C/T]agcgttagat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTC</left_flank>
        <right_flank>AGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGCTATTAACTGGATCTACGGTGTCGATAATATGTTGGACAATGCGAAA</canonical>
            <polymorphic>TTTGCACAATTTCTAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCYAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGCTATTAACTGGATCTACGGTGTCGATAATATGTTGGACAATGCGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGAAAATTGAGATTGAGAG</pcr_primer_p1>
		<pcr_primer_p2>CGAACATTTTGGGTTACTGT</pcr_primer_p2>
		<pcr_amplicon_size>989</pcr_amplicon_size>
		<canonical_amplicon>CCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCG</canonical_amplicon>
		<polymorphic_amplicon>CYAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38262</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>430109</contig_pos>
        <strand>+</strand>
        <context>cgttagattt[G/T]ragwatttca</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTT</left_flank>
        <right_flank>AAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGCTATTAACTGGATCTACGGTGTCGATAATATGTTGGACAATGCGAAATGGATTGTGGGAC</canonical>
            <polymorphic>TAGCTAGTTTTTGATCCTAAAATCGAATTTCGCACTATCAATTTACCTTGGGACAATATTTTTAGCCCTCTAGCTCTTTTTTGGTGTTTGCGTACTTTTGGAGCTACAGTAACCTGAAAATTCAGAAAAATTCAAAAATTGAGCCAGGGCATTTTAGAGGTAGTTTTTAGCGCTAAATCTGATTCCAGCATTATATTTCGATGCTCCGGAGGGTTTACGTACTTTTCGAAATACAGTAATCCGGAAAAGTTTCAAACTCTGTCCCATAGTGGAGGTCTCGTGCATTTTGAGAAGTTTTCAATGCGAATTTCGGATTTAGCATAGCTGCTTAGCTCTAGGAACCATTTTTCAGCCCTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCAGAAATTCTGAAAAATTCAAAAATTGAGCTAGGAGCTCGAACAAAAGTGATTCTAGGCTAATTTTCGGAGCAGATTTCTATTCCAGCGTTAGATTTKAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAGCGTTTTCGCGCGTTTAGAGCCCTTTCTTGGTAATGTTTTGCTCGAATTTGATGGCTTTTTCTCCAAAATCTACAGTAACCCTTCTAAAAAAGGCCTTTTCCAGGTGTCCCAGTTGCTCCCCTCTACGCTGGCCTCTTCTTCATAATGATTCTTCTGGTGGTCCATGCGACCCAGATGTTCGTAGTGGAAACGATAGTATCCTCTCTTTGTGACGAGTATCCAGAACGACTCCGTCGGAATAGAAGACACGTACTGACTACAGTATGCGCCCTATTCATATGTCTCTCAATTCCCTTTTGCTTGTCTTCTGGATTGTATTGGATGGAGCTGCTCACTCAATTTGTGCTCACATGGCCTCTGGTAGTCATTGCCTTCTTGGAATGTATGGCTATTAACTGGATCTACGGTGTCGATAATATGTTGGACAATGCGAAATGGATTGTGGGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>499 445 56</canonical_bands>
                <polymorphic_bands>944 56</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGAAAATTGAGATTGAGAG</pcr_primer_p1>
		<pcr_primer_p2>CTTTGAAATTCGAACATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>999</pcr_amplicon_size>
		<canonical_amplicon>TTAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAG</canonical_amplicon>
		<polymorphic_amplicon>TKAAGTATTTCATCACTCTCAGCTACAGTAACCCAAAATGTTCGAATTTCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38265</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>431687</contig_pos>
        <strand>+</strand>
        <context>ccttgggacc[A/C]amtttccagc</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGTTTTTAATGCGAAATTCGAATTCCGCGCAGTTATTTCACCTTGGGACC</left_flank>
        <right_flank>ACTTTCCAGCCATCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCATATCAATTCCCATATTGGTCGATTCTAGCGGCATGGGGTAAGATTTTTGTCTGAAATTTTGGCTGAAAATGGCCGATTTTTTGAATTTTTGAGCCATTTTTGGGATTTTTTAGCAGTATTCTTAAGATTTCGACCCCCCATTTTTTCCAGGAATCGCCTCTCTCCCGCTATTGCTCATTCCAATTATTGGAAGTTGGCAATTCTGTATTGCCAAGGGATCAATAACACAGAAATGGTGGAGAGTACTGTATCCGGACGACGCATGGGGACCCGCACTAGCAATTCATAGGGCTGAGAAGTTCCCGTTGCAGATTCCGGAAGCACGACGATTGTTATTACCCCCGGAAGTGGAAATCGCGAGCTCGCAGAGGGATTTACAGGTGAAAAATTGGCTGAAATTGAGCTACAGTAACCCATATAGCGAATTTCCCACGCATTTTGAGGAGTTTTTAATGCGAAATTCGAATTCCGCGCAGTTATTTCACCTTGGGACCCACTTTCCAGCCATCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCGAAATGTTTGAAAAATTTCAAAAATTGAGACAGGAACTCTAACAAAAGCGATTTTAGACTAGTTTTCAGTGCTGGATCTGATTCTGGAGTTGAATTTTCAATATTAAAGTGTTTGCGTACTTTTCGAGATACAGTAATCCATAAAAGTTACGTATCCAGCTTAAAAGCTTATTACGTTTGCATTTTAAAGAGTTTTCAATGCGAAATTCGAATTCCGCACTGTTACTTTACTCTAAATTCCATTTTCAAGCCCTCTAGCTCTTATTCGGTGTTTGCGTACTTTTGAAGCTACAGTAAGCCAAAAAATTTTGAAAAATCCAAAAGTTGAGCTAGGAGCTCTAACAAAAGAGATTCTTGGCTAGTTTCTATCGCTGATTCTGATTCTGGAATTAGATTTTACATATCTCAAATCGTTTGCGTTTTTTTCGAGCTACAGTAAC</canonical>
            <polymorphic>AATCATATCAATTCCCATATTGGTCGATTCTAGCGGCATGGGGTAAGATTTTTGTCTGAAATTTTGGCTGAAAATGGCCGATTTTTTGAATTTTTGAGCCATTTTTGGGATTTTTTAGCAGTATTCTTAAGATTTCGACCCCCCATTTTTTCCAGGAATCGCCTCTCTCCCGCTATTGCTCATTCCAATTATTGGAAGTTGGCAATTCTGTATTGCCAAGGGATCAATAACACAGAAATGGTGGAGAGTACTGTATCCGGACGACGCATGGGGACCCGCACTAGCAATTCATAGGGCTGAGAAGTTCCCGTTGCAGATTCCGGAAGCACGACGATTGTTATTACCCCCGGAAGTGGAAATCGCGAGCTCGCAGAGGGATTTACAGGTGAAAAATTGGCTGAAATTGAGCTACAGTAACCCATATAGCGAATTTCCCACGCATTTTGAGGAGTTTTTAATGCGAAATTCGAATTCCGCGCAGTTATTTCACCTTGGGACCMACTTTCCAGCCATCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCGAAATGTTTGAAAAATTTCAAAAATTGAGACAGGAACTCTAACAAAAGCGATTTTAGACTAGTTTTCAGTGCTGGATCTGATTCTGGAGTTGAATTTTCAATATTAAAGTGTTTGCGTACTTTTCGAGATACAGTAATCCATAAAAGTTACGTATCCAGCTTAAAAGCTTATTACGTTTGCATTTTAAAGAGTTTTCAATGCGAAATTCGAATTCCGCACTGTTACTTTACTCTAAATTCCATTTTCAAGCCCTCTAGCTCTTATTCGGTGTTTGCGTACTTTTGAAGCTACAGTAAGCCAAAAAATTTTGAAAAATCCAAAAGTTGAGCTAGGAGCTCTAACAAAAGAGATTCTTGGCTAGTTTCTATCGCTGATTCTGATTCTGGAATTAGATTTTACATATCTCAAATCGTTTGCGTTTTTTTCGAGCTACAGTAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>505 272 223</canonical_bands>
                <polymorphic_bands>728 272</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>232 169 108 101 52 52 49 48 40 37 33 29 27 12 11</canonical_bands>
                <polymorphic_bands>232 169 108 101 52 52 49 48 41 40 37 33 27 11</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>505 272 223</canonical_bands>
                <polymorphic_bands>728 272</polymorphic_bands>
            </assay>
            <assay>
                <site>GGGWCCC</site>
                <isoschizomers>
                    <enzyme>SanDI</enzyme>
                </isoschizomers>
                <canonical_bands>505 272 223</canonical_bands>
                <polymorphic_bands>728 272</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTAACCCATATAGCGAATTT</pcr_primer_p1>
		<pcr_primer_p2>GTGGGGAATCTGCTATGATAC</pcr_primer_p2>
		<pcr_amplicon_size>932</pcr_amplicon_size>
		<canonical_amplicon>CAGTAACCCATATAGCGAATTTCCCACGCATTTTGAGGAGTTTTTAATGCGAAATTCGAATTCCGCGCAGTTATTTCACCTTGGGACCCACTTTCCAGCCATCTAGCTC</canonical_amplicon>
		<polymorphic_amplicon>CAGTAACCCATATAGCGAATTTCCCACGCATTTTGAGGAGTTTTTAATGCGAAATTCGAATTCCGCGCAGTTATTTCACCTTGGGACCMACTTTCCAGCCATCTAGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38266</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>431689</contig_pos>
        <strand>+</strand>
        <context>ttgggaccma[A/C]tttccagccm</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTTAATGCGAAATTCGAATTCCGCGCAGTTATTTCACCTTGGGACCCA</left_flank>
        <right_flank>TTTCCAGCCATCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATATCAATTCCCATATTGGTCGATTCTAGCGGCATGGGGTAAGATTTTTGTCTGAAATTTTGGCTGAAAATGGCCGATTTTTTGAATTTTTGAGCCATTTTTGGGATTTTTTAGCAGTATTCTTAAGATTTCGACCCCCCATTTTTTCCAGGAATCGCCTCTCTCCCGCTATTGCTCATTCCAATTATTGGAAGTTGGCAATTCTGTATTGCCAAGGGATCAATAACACAGAAATGGTGGAGAGTACTGTATCCGGACGACGCATGGGGACCCGCACTAGCAATTCATAGGGCTGAGAAGTTCCCGTTGCAGATTCCGGAAGCACGACGATTGTTATTACCCCCGGAAGTGGAAATCGCGAGCTCGCAGAGGGATTTACAGGTGAAAAATTGGCTGAAATTGAGCTACAGTAACCCATATAGCGAATTTCCCACGCATTTTGAGGAGTTTTTAATGCGAAATTCGAATTCCGCGCAGTTATTTCACCTTGGGACCCACTTTCCAGCCATCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCGAAATGTTTGAAAAATTTCAAAAATTGAGACAGGAACTCTAACAAAAGCGATTTTAGACTAGTTTTCAGTGCTGGATCTGATTCTGGAGTTGAATTTTCAATATTAAAGTGTTTGCGTACTTTTCGAGATACAGTAATCCATAAAAGTTACGTATCCAGCTTAAAAGCTTATTACGTTTGCATTTTAAAGAGTTTTCAATGCGAAATTCGAATTCCGCACTGTTACTTTACTCTAAATTCCATTTTCAAGCCCTCTAGCTCTTATTCGGTGTTTGCGTACTTTTGAAGCTACAGTAAGCCAAAAAATTTTGAAAAATCCAAAAGTTGAGCTAGGAGCTCTAACAAAAGAGATTCTTGGCTAGTTTCTATCGCTGATTCTGATTCTGGAATTAGATTTTACATATCTCAAATCGTTTGCGTTTTTTTCGAGCTACAGTAACCC</canonical>
            <polymorphic>TCATATCAATTCCCATATTGGTCGATTCTAGCGGCATGGGGTAAGATTTTTGTCTGAAATTTTGGCTGAAAATGGCCGATTTTTTGAATTTTTGAGCCATTTTTGGGATTTTTTAGCAGTATTCTTAAGATTTCGACCCCCCATTTTTTCCAGGAATCGCCTCTCTCCCGCTATTGCTCATTCCAATTATTGGAAGTTGGCAATTCTGTATTGCCAAGGGATCAATAACACAGAAATGGTGGAGAGTACTGTATCCGGACGACGCATGGGGACCCGCACTAGCAATTCATAGGGCTGAGAAGTTCCCGTTGCAGATTCCGGAAGCACGACGATTGTTATTACCCCCGGAAGTGGAAATCGCGAGCTCGCAGAGGGATTTACAGGTGAAAAATTGGCTGAAATTGAGCTACAGTAACCCATATAGCGAATTTCCCACGCATTTTGAGGAGTTTTTAATGCGAAATTCGAATTCCGCGCAGTTATTTCACCTTGGGACCCAMTTTCCAGCCATCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCGAAATGTTTGAAAAATTTCAAAAATTGAGACAGGAACTCTAACAAAAGCGATTTTAGACTAGTTTTCAGTGCTGGATCTGATTCTGGAGTTGAATTTTCAATATTAAAGTGTTTGCGTACTTTTCGAGATACAGTAATCCATAAAAGTTACGTATCCAGCTTAAAAGCTTATTACGTTTGCATTTTAAAGAGTTTTCAATGCGAAATTCGAATTCCGCACTGTTACTTTACTCTAAATTCCATTTTCAAGCCCTCTAGCTCTTATTCGGTGTTTGCGTACTTTTGAAGCTACAGTAAGCCAAAAAATTTTGAAAAATCCAAAAGTTGAGCTAGGAGCTCTAACAAAAGAGATTCTTGGCTAGTTTCTATCGCTGATTCTGATTCTGGAATTAGATTTTACATATCTCAAATCGTTTGCGTTTTTTTCGAGCTACAGTAACCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>230 171 108 101 52 52 49 48 40 37 33 29 27 12 11</canonical_bands>
                <polymorphic_bands>230 171 108 101 52 52 49 48 41 40 37 33 27 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTAACCCATATAGCGAATTT</pcr_primer_p1>
		<pcr_primer_p2>GTGGGGAATCTGCTATGATAC</pcr_primer_p2>
		<pcr_amplicon_size>932</pcr_amplicon_size>
		<canonical_amplicon>CAGTAACCCATATAGCGAATTTCCCACGCATTTTGAGGAGTTTTTAATGCGAAATTCGAATTCCGCGCAGTTATTTCACCTTGGGACCCACTTTCCAGCCATCTAGCTCTC</canonical_amplicon>
		<polymorphic_amplicon>CAGTAACCCATATAGCGAATTTCCCACGCATTTTGAGGAGTTTTTAATGCGAAATTCGAATTCCGCGCAGTTATTTCACCTTGGGACCCAMTTTCCAGCCATCTAGCTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38267</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>431699</contig_pos>
        <strand>+</strand>
        <context>mtttccagcc[A/C]tctagctctc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAATTCGAATTCCGCGCAGTTATTTCACCTTGGGACCCACTTTCCAGCC</left_flank>
        <right_flank>TCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCCATATTGGTCGATTCTAGCGGCATGGGGTAAGATTTTTGTCTGAAATTTTGGCTGAAAATGGCCGATTTTTTGAATTTTTGAGCCATTTTTGGGATTTTTTAGCAGTATTCTTAAGATTTCGACCCCCCATTTTTTCCAGGAATCGCCTCTCTCCCGCTATTGCTCATTCCAATTATTGGAAGTTGGCAATTCTGTATTGCCAAGGGATCAATAACACAGAAATGGTGGAGAGTACTGTATCCGGACGACGCATGGGGACCCGCACTAGCAATTCATAGGGCTGAGAAGTTCCCGTTGCAGATTCCGGAAGCACGACGATTGTTATTACCCCCGGAAGTGGAAATCGCGAGCTCGCAGAGGGATTTACAGGTGAAAAATTGGCTGAAATTGAGCTACAGTAACCCATATAGCGAATTTCCCACGCATTTTGAGGAGTTTTTAATGCGAAATTCGAATTCCGCGCAGTTATTTCACCTTGGGACCCACTTTCCAGCCATCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCGAAATGTTTGAAAAATTTCAAAAATTGAGACAGGAACTCTAACAAAAGCGATTTTAGACTAGTTTTCAGTGCTGGATCTGATTCTGGAGTTGAATTTTCAATATTAAAGTGTTTGCGTACTTTTCGAGATACAGTAATCCATAAAAGTTACGTATCCAGCTTAAAAGCTTATTACGTTTGCATTTTAAAGAGTTTTCAATGCGAAATTCGAATTCCGCACTGTTACTTTACTCTAAATTCCATTTTCAAGCCCTCTAGCTCTTATTCGGTGTTTGCGTACTTTTGAAGCTACAGTAAGCCAAAAAATTTTGAAAAATCCAAAAGTTGAGCTAGGAGCTCTAACAAAAGAGATTCTTGGCTAGTTTCTATCGCTGATTCTGATTCTGGAATTAGATTTTACATATCTCAAATCGTTTGCGTTTTTTTCGAGCTACAGTAACCCAGAAAAATTT</canonical>
            <polymorphic>TCCCATATTGGTCGATTCTAGCGGCATGGGGTAAGATTTTTGTCTGAAATTTTGGCTGAAAATGGCCGATTTTTTGAATTTTTGAGCCATTTTTGGGATTTTTTAGCAGTATTCTTAAGATTTCGACCCCCCATTTTTTCCAGGAATCGCCTCTCTCCCGCTATTGCTCATTCCAATTATTGGAAGTTGGCAATTCTGTATTGCCAAGGGATCAATAACACAGAAATGGTGGAGAGTACTGTATCCGGACGACGCATGGGGACCCGCACTAGCAATTCATAGGGCTGAGAAGTTCCCGTTGCAGATTCCGGAAGCACGACGATTGTTATTACCCCCGGAAGTGGAAATCGCGAGCTCGCAGAGGGATTTACAGGTGAAAAATTGGCTGAAATTGAGCTACAGTAACCCATATAGCGAATTTCCCACGCATTTTGAGGAGTTTTTAATGCGAAATTCGAATTCCGCGCAGTTATTTCACCTTGGGACCCACTTTCCAGCCMTCTAGCTCTCATTCGGTGTTTGCGTACTTTTGGAGCTACAGTAATCCCGAAATGTTTGAAAAATTTCAAAAATTGAGACAGGAACTCTAACAAAAGCGATTTTAGACTAGTTTTCAGTGCTGGATCTGATTCTGGAGTTGAATTTTCAATATTAAAGTGTTTGCGTACTTTTCGAGATACAGTAATCCATAAAAGTTACGTATCCAGCTTAAAAGCTTATTACGTTTGCATTTTAAAGAGTTTTCAATGCGAAATTCGAATTCCGCACTGTTACTTTACTCTAAATTCCATTTTCAAGCCCTCTAGCTCTTATTCGGTGTTTGCGTACTTTTGAAGCTACAGTAAGCCAAAAAATTTTGAAAAATCCAAAAGTTGAGCTAGGAGCTCTAACAAAAGAGATTCTTGGCTAGTTTCTATCGCTGATTCTGATTCTGGAATTAGATTTTACATATCTCAAATCGTTTGCGTTTTTTTCGAGCTACAGTAACCCAGAAAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTAACCCATATAGCGAATTT</pcr_primer_p1>
		<pcr_primer_p2>GTGGGGAATCTGCTATGATAC</pcr_primer_p2>
		<pcr_amplicon_size>932</pcr_amplicon_size>
		<canonical_amplicon>CAGTAACCCATATAGCGAATTTCCCACGCATTTTGAGGAGTTTTTAATGCGAAATTCGAATTCCGCGCAGTTATTTCACCTTGGGACCCACTTTCCAGCCATCTAGCTCTCATTCGGTGTT</canonical_amplicon>
		<polymorphic_amplicon>CAGTAACCCATATAGCGAATTTCCCACGCATTTTGAGGAGTTTTTAATGCGAAATTCGAATTCCGCGCAGTTATTTCACCTTGGGACCCACTTTCCAGCCMTCTAGCTCTCATTCGGTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38268</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>437733</contig_pos>
        <strand></strand>
        <context>cgcgctagca[C/A]aatttgtcgt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AACTCCTCGTAGCTGATTACCCATTGACACTTATTTTCAGCGCGCTAGCA</left_flank>
        <right_flank>AATTTGTCGTAAGATTAGGTGTTTGGCGTGGCGTTTGCGTACTTTCGGCG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACGCCTTCATTCCCTTGGACAGGGACATCAAATGGATATTACTGTCGAAGGATTCACCTCGTGGCAATTCAAAGGACTCACTTTCCTTTTGCCCTTTTTGACCGTTGGATATGTGAGTTTTGGGGGCTTATGAAGCAGTTTTTAGCTTTTAAAACTATGAAAATCGAACTCTGCGTAGCTGATTATCCCTTGACACTTATTTTCAGCGCGCTAGCACAAAGTGTCGTAAGATTAGGTGTTTCACTTGGTGTTTGCGTACTTTTGGCGCTACCGTAACCCCAGAAATCTCAAAATTGAGCTAGCAGGTTCTAGAAAACGCTGTCTAGCATAACTTTTTGCGCTGATTTCGTATTTGATGATAGTTTTCGAATCAGACAATGTCTTGAGGGCTTAAAAATTCAAAAAAGGATTTAGGACAGCCGTAATCGTCTTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGACACTTATTTTCAGCGCGCTAGCACAATTTGTCGTAAGATTAGGTGTTTGGCGTGGCGTTTGCGTACTTTCGGCGCTACCGTAATCCAAAAACCTTGAAAGTGAGCTAGAAAGTCCTGGAAAACGCTGTCTAGATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGACTGAATCTTGAGAATCTACATGCTCAAAAAGGGGATCAAGGAGAGCCTTAAGAGTGTTAAAAGTATCAAAATCGAACTCTGCGTAGCTGTTTACCCCCCGGAAACCAATTTTCAGCGCTCTAGCTCTAATTGTCGTAGGATTCGGTGTTTGGCGTGGTGTTTGCGTACTTTCGGCGCTACCGTAACCCAGCAATTTCAAAATTGAGCTAGGAAGTTCTAGAAAACGCCGCCTAGAGCAATTTTATGCGCTGATTTCGAATTTGAGAACAATTTTCCAAAATTTGCAGCTCTTCCAATTGTTCCTGGCCGGCAAACTGTACATGTATGTGAACACGGAAATGTG</canonical>
            <polymorphic>GACGCCTTCATTCCCTTGGACAGGGACATCAAATGGATATTACTGTCGAAGGATTCACCTCGTGGCAATTCAAAGGACTCACTTTCCTTTTGCCCTTTTTGACCGTTGGATATGTGAGTTTTGGGGGCTTATGAAGCAGTTTTTAGCTTTTAAAACTATGAAAATCGAACTCTGCGTAGCTGATTATCCCTTGACACTTATTTTCAGCGCGCTAGCACAAAGTGTCGTAAGATTAGGTGTTTCACTTGGTGTTTGCGTACTTTTGGCGCTACCGTAACCCCAGAAATCTCAAAATTGAGCTAGCAGGTTCTAGAAAACGCTGTCTAGCATAACTTTTTGCGCTGATTTCGTATTTGATGATAGTTTTCGAATCAGACAATGTCTTGAGGGCTTAAAAATTCAAAAAAGGATTTAGGACAGCCGTAATCGTCTTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGACACTTATTTTCAGCGCGCTAGCAMAATTTGTCGTAAGATTAGGTGTTTGGCGTGGCGTTTGCGTACTTTCGGCGCTACCGTAATCCAAAAACCTTGAAAGTGAGCTAGAAAGTCCTGGAAAACGCTGTCTAGATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGACTGAATCTTGAGAATCTACATGCTCAAAAAGGGGATCAAGGAGAGCCTTAAGAGTGTTAAAAGTATCAAAATCGAACTCTGCGTAGCTGTTTACCCCCCGGAAACCAATTTTCAGCGCTCTAGCTCTAATTGTCGTAGGATTCGGTGTTTGGCGTGGTGTTTGCGTACTTTCGGCGCTACCGTAACCCAGCAATTTCAAAATTGAGCTAGGAAGTTCTAGAAAACGCCGCCTAGAGCAATTTTATGCGCTGATTTCGAATTTGAGAACAATTTTCCAAAATTTGCAGCTCTTCCAATTGTTCCTGGCCGGCAAACTGTACATGTATGTGAACACGGAAATGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>227 170 91 91 80 57 48 42 35 22 21 21 17 15 10 9 9 7 7 7 5 4 3 2 0</canonical_bands>
                <polymorphic_bands>227 170 91 91 80 57 48 43 42 35 21 17 15 10 9 9 7 7 7 5 4 3 2 0</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAAACTATCAAAATCGAACTC</pcr_primer_p1>
		<pcr_primer_p2>TGTAGATTCTCAAGATTCAGTCAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGACACTTATTTTCAGCGCGCTAGCACAATTTGTCGTAAGATTAGGTGTTTGGCGTGGCGTTTGCGTACTTTCGGCGCTACCGTAATCCAAAAACCTTGAAAGTGAGCTAGAAAGTCCTGGAAAACGCTGTCTAGATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGACTGAATCTTGAGAATCTACA</canonical_amplicon>
		<polymorphic_amplicon>TTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGACACTTATTTTCAGCGCGCTAGCAMAATTTGTCGTAAGATTAGGTGTTTGGCGTGGCGTTTGCGTACTTTCGGCGCTACCGTAATCCAAAAACCTTGAAAGTGAGCTAGAAAGTCCTGGAAAACGCTGTCTAGATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGACTGAATCTTGAGAATCTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38269</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>437765</contig_pos>
        <strand></strand>
        <context>tttggcgtgg[C/T]gtttgcgtac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTCAGCGCGCTAGCACAATTTGTCGTAAGATTAGGTGTTTGGCGTGG</left_flank>
        <right_flank>GTTTGCGTACTTTCGGCGCTACCGTAATCCAAAAACCTTGAAAGTGAGCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGATATTACTGTCGAAGGATTCACCTCGTGGCAATTCAAAGGACTCACTTTCCTTTTGCCCTTTTTGACCGTTGGATATGTGAGTTTTGGGGGCTTATGAAGCAGTTTTTAGCTTTTAAAACTATGAAAATCGAACTCTGCGTAGCTGATTATCCCTTGACACTTATTTTCAGCGCGCTAGCACAAAGTGTCGTAAGATTAGGTGTTTCACTTGGTGTTTGCGTACTTTTGGCGCTACCGTAACCCCAGAAATCTCAAAATTGAGCTAGCAGGTTCTAGAAAACGCTGTCTAGCATAACTTTTTGCGCTGATTTCGTATTTGATGATAGTTTTCGAATCAGACAATGTCTTGAGGGCTTAAAAATTCAAAAAAGGATTTAGGACAGCCGTAATCGTCTTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGACACTTATTTTCAGCGCGCTAGCACAATTTGTCGTAAGATTAGGTGTTTGGCGTGGCGTTTGCGTACTTTCGGCGCTACCGTAATCCAAAAACCTTGAAAGTGAGCTAGAAAGTCCTGGAAAACGCTGTCTAGATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGACTGAATCTTGAGAATCTACATGCTCAAAAAGGGGATCAAGGAGAGCCTTAAGAGTGTTAAAAGTATCAAAATCGAACTCTGCGTAGCTGTTTACCCCCCGGAAACCAATTTTCAGCGCTCTAGCTCTAATTGTCGTAGGATTCGGTGTTTGGCGTGGTGTTTGCGTACTTTCGGCGCTACCGTAACCCAGCAATTTCAAAATTGAGCTAGGAAGTTCTAGAAAACGCCGCCTAGAGCAATTTTATGCGCTGATTTCGAATTTGAGAACAATTTTCCAAAATTTGCAGCTCTTCCAATTGTTCCTGGCCGGCAAACTGTACATGTATGTGAACACGGAAATGTGTGATGGATTGTGGCAGGTACAAGACTATCACA</canonical>
            <polymorphic>ATGGATATTACTGTCGAAGGATTCACCTCGTGGCAATTCAAAGGACTCACTTTCCTTTTGCCCTTTTTGACCGTTGGATATGTGAGTTTTGGGGGCTTATGAAGCAGTTTTTAGCTTTTAAAACTATGAAAATCGAACTCTGCGTAGCTGATTATCCCTTGACACTTATTTTCAGCGCGCTAGCACAAAGTGTCGTAAGATTAGGTGTTTCACTTGGTGTTTGCGTACTTTTGGCGCTACCGTAACCCCAGAAATCTCAAAATTGAGCTAGCAGGTTCTAGAAAACGCTGTCTAGCATAACTTTTTGCGCTGATTTCGTATTTGATGATAGTTTTCGAATCAGACAATGTCTTGAGGGCTTAAAAATTCAAAAAAGGATTTAGGACAGCCGTAATCGTCTTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGACACTTATTTTCAGCGCGCTAGCACAATTTGTCGTAAGATTAGGTGTTTGGCGTGGYGTTTGCGTACTTTCGGCGCTACCGTAATCCAAAAACCTTGAAAGTGAGCTAGAAAGTCCTGGAAAACGCTGTCTAGATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGACTGAATCTTGAGAATCTACATGCTCAAAAAGGGGATCAAGGAGAGCCTTAAGAGTGTTAAAAGTATCAAAATCGAACTCTGCGTAGCTGTTTACCCCCCGGAAACCAATTTTCAGCGCTCTAGCTCTAATTGTCGTAGGATTCGGTGTTTGGCGTGGTGTTTGCGTACTTTCGGCGCTACCGTAACCCAGCAATTTCAAAATTGAGCTAGGAAGTTCTAGAAAACGCCGCCTAGAGCAATTTTATGCGCTGATTTCGAATTTGAGAACAATTTTCCAAAATTTGCAGCTCTTCCAATTGTTCCTGGCCGGCAAACTGTACATGTATGTGAACACGGAAATGTGTGATGGATTGTGGCAGGTACAAGACTATCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAAACTATCAAAATCGAACTC</pcr_primer_p1>
		<pcr_primer_p2>TGTAGATTCTCAAGATTCAGTCAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGACACTTATTTTCAGCGCGCTAGCACAATTTGTCGTAAGATTAGGTGTTTGGCGTGGCGTTTGCGTACTTTCGGCGCTACCGTAATCCAAAAACCTTGAAAGTGAGCTAGAAAGTCCTGGAAAACGCTGTCTAGATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGACTGAATCTTGAGAATCTACA</canonical_amplicon>
		<polymorphic_amplicon>TTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGACACTTATTTTCAGCGCGCTAGCACAATTTGTCGTAAGATTAGGTGTTTGGCGTGGYGTTTGCGTACTTTCGGCGCTACCGTAATCCAAAAACCTTGAAAGTGAGCTAGAAAGTCCTGGAAAACGCTGTCTAGATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGACTGAATCTTGAGAATCTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38270</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>437796</contig_pos>
        <strand></strand>
        <context>accgtaatcc[A/G]aaaaccttga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATTAGGTGTTTGGCGTGGCGTTTGCGTACTTTCGGCGCTACCGTAATCC</left_flank>
        <right_flank>AAAACCTTGAAAGTGAGCTAGAAAGTCCTGGAAAACGCTGTCTAGATCCA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCAATTCAAAGGACTCACTTTCCTTTTGCCCTTTTTGACCGTTGGATATGTGAGTTTTGGGGGCTTATGAAGCAGTTTTTAGCTTTTAAAACTATGAAAATCGAACTCTGCGTAGCTGATTATCCCTTGACACTTATTTTCAGCGCGCTAGCACAAAGTGTCGTAAGATTAGGTGTTTCACTTGGTGTTTGCGTACTTTTGGCGCTACCGTAACCCCAGAAATCTCAAAATTGAGCTAGCAGGTTCTAGAAAACGCTGTCTAGCATAACTTTTTGCGCTGATTTCGTATTTGATGATAGTTTTCGAATCAGACAATGTCTTGAGGGCTTAAAAATTCAAAAAAGGATTTAGGACAGCCGTAATCGTCTTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGACACTTATTTTCAGCGCGCTAGCACAATTTGTCGTAAGATTAGGTGTTTGGCGTGGCGTTTGCGTACTTTCGGCGCTACCGTAATCCAAAAACCTTGAAAGTGAGCTAGAAAGTCCTGGAAAACGCTGTCTAGATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGACTGAATCTTGAGAATCTACATGCTCAAAAAGGGGATCAAGGAGAGCCTTAAGAGTGTTAAAAGTATCAAAATCGAACTCTGCGTAGCTGTTTACCCCCCGGAAACCAATTTTCAGCGCTCTAGCTCTAATTGTCGTAGGATTCGGTGTTTGGCGTGGTGTTTGCGTACTTTCGGCGCTACCGTAACCCAGCAATTTCAAAATTGAGCTAGGAAGTTCTAGAAAACGCCGCCTAGAGCAATTTTATGCGCTGATTTCGAATTTGAGAACAATTTTCCAAAATTTGCAGCTCTTCCAATTGTTCCTGGCCGGCAAACTGTACATGTATGTGAACACGGAAATGTGTGATGGATTGTGGCAGGTACAAGACTATCACAAAAATTTTGAAAATTTTAAGCCCCGCCTCTT</canonical>
            <polymorphic>GGCAATTCAAAGGACTCACTTTCCTTTTGCCCTTTTTGACCGTTGGATATGTGAGTTTTGGGGGCTTATGAAGCAGTTTTTAGCTTTTAAAACTATGAAAATCGAACTCTGCGTAGCTGATTATCCCTTGACACTTATTTTCAGCGCGCTAGCACAAAGTGTCGTAAGATTAGGTGTTTCACTTGGTGTTTGCGTACTTTTGGCGCTACCGTAACCCCAGAAATCTCAAAATTGAGCTAGCAGGTTCTAGAAAACGCTGTCTAGCATAACTTTTTGCGCTGATTTCGTATTTGATGATAGTTTTCGAATCAGACAATGTCTTGAGGGCTTAAAAATTCAAAAAAGGATTTAGGACAGCCGTAATCGTCTTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGACACTTATTTTCAGCGCGCTAGCACAATTTGTCGTAAGATTAGGTGTTTGGCGTGGCGTTTGCGTACTTTCGGCGCTACCGTAATCCRAAAACCTTGAAAGTGAGCTAGAAAGTCCTGGAAAACGCTGTCTAGATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGACTGAATCTTGAGAATCTACATGCTCAAAAAGGGGATCAAGGAGAGCCTTAAGAGTGTTAAAAGTATCAAAATCGAACTCTGCGTAGCTGTTTACCCCCCGGAAACCAATTTTCAGCGCTCTAGCTCTAATTGTCGTAGGATTCGGTGTTTGGCGTGGTGTTTGCGTACTTTCGGCGCTACCGTAACCCAGCAATTTCAAAATTGAGCTAGGAAGTTCTAGAAAACGCCGCCTAGAGCAATTTTATGCGCTGATTTCGAATTTGAGAACAATTTTCCAAAATTTGCAGCTCTTCCAATTGTTCCTGGCCGGCAAACTGTACATGTATGTGAACACGGAAATGTGTGATGGATTGTGGCAGGTACAAGACTATCACAAAAATTTTGAAAATTTTAAGCCCCGCCTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAAACTATCAAAATCGAACTC</pcr_primer_p1>
		<pcr_primer_p2>TGTAGATTCTCAAGATTCAGTCAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGACACTTATTTTCAGCGCGCTAGCACAATTTGTCGTAAGATTAGGTGTTTGGCGTGGCGTTTGCGTACTTTCGGCGCTACCGTAATCCAAAAACCTTGAAAGTGAGCTAGAAAGTCCTGGAAAACGCTGTCTAGATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGACTGAATCTTGAGAATCTACA</canonical_amplicon>
		<polymorphic_amplicon>TTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGACACTTATTTTCAGCGCGCTAGCACAATTTGTCGTAAGATTAGGTGTTTGGCGTGGCGTTTGCGTACTTTCGGCGCTACCGTAATCCRAAAACCTTGAAAGTGAGCTAGAAAGTCCTGGAAAACGCTGTCTAGATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGACTGAATCTTGAGAATCTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38271</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>437817</contig_pos>
        <strand></strand>
        <context>aagtgagcta[G/A]aaagtcctgg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTGCGTACTTTCGGCGCTACCGTAATCCAAAAACCTTGAAAGTGAGCTA</left_flank>
        <right_flank>AAAGTCCTGGAAAACGCTGTCTAGATCCATTTTTCACACTGATTCCAGAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTTTTGCCCTTTTTGACCGTTGGATATGTGAGTTTTGGGGGCTTATGAAGCAGTTTTTAGCTTTTAAAACTATGAAAATCGAACTCTGCGTAGCTGATTATCCCTTGACACTTATTTTCAGCGCGCTAGCACAAAGTGTCGTAAGATTAGGTGTTTCACTTGGTGTTTGCGTACTTTTGGCGCTACCGTAACCCCAGAAATCTCAAAATTGAGCTAGCAGGTTCTAGAAAACGCTGTCTAGCATAACTTTTTGCGCTGATTTCGTATTTGATGATAGTTTTCGAATCAGACAATGTCTTGAGGGCTTAAAAATTCAAAAAAGGATTTAGGACAGCCGTAATCGTCTTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGACACTTATTTTCAGCGCGCTAGCACAATTTGTCGTAAGATTAGGTGTTTGGCGTGGCGTTTGCGTACTTTCGGCGCTACCGTAATCCAAAAACCTTGAAAGTGAGCTAGAAAGTCCTGGAAAACGCTGTCTAGATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGACTGAATCTTGAGAATCTACATGCTCAAAAAGGGGATCAAGGAGAGCCTTAAGAGTGTTAAAAGTATCAAAATCGAACTCTGCGTAGCTGTTTACCCCCCGGAAACCAATTTTCAGCGCTCTAGCTCTAATTGTCGTAGGATTCGGTGTTTGGCGTGGTGTTTGCGTACTTTCGGCGCTACCGTAACCCAGCAATTTCAAAATTGAGCTAGGAAGTTCTAGAAAACGCCGCCTAGAGCAATTTTATGCGCTGATTTCGAATTTGAGAACAATTTTCCAAAATTTGCAGCTCTTCCAATTGTTCCTGGCCGGCAAACTGTACATGTATGTGAACACGGAAATGTGTGATGGATTGTGGCAGGTACAAGACTATCACAAAAATTTTGAAAATTTTAAGCCCCGCCTCTTTTTTGCAGGTTTGGGCTCTCT</canonical>
            <polymorphic>TCCTTTTGCCCTTTTTGACCGTTGGATATGTGAGTTTTGGGGGCTTATGAAGCAGTTTTTAGCTTTTAAAACTATGAAAATCGAACTCTGCGTAGCTGATTATCCCTTGACACTTATTTTCAGCGCGCTAGCACAAAGTGTCGTAAGATTAGGTGTTTCACTTGGTGTTTGCGTACTTTTGGCGCTACCGTAACCCCAGAAATCTCAAAATTGAGCTAGCAGGTTCTAGAAAACGCTGTCTAGCATAACTTTTTGCGCTGATTTCGTATTTGATGATAGTTTTCGAATCAGACAATGTCTTGAGGGCTTAAAAATTCAAAAAAGGATTTAGGACAGCCGTAATCGTCTTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGACACTTATTTTCAGCGCGCTAGCACAATTTGTCGTAAGATTAGGTGTTTGGCGTGGCGTTTGCGTACTTTCGGCGCTACCGTAATCCAAAAACCTTGAAAGTGAGCTARAAAGTCCTGGAAAACGCTGTCTAGATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGACTGAATCTTGAGAATCTACATGCTCAAAAAGGGGATCAAGGAGAGCCTTAAGAGTGTTAAAAGTATCAAAATCGAACTCTGCGTAGCTGTTTACCCCCCGGAAACCAATTTTCAGCGCTCTAGCTCTAATTGTCGTAGGATTCGGTGTTTGGCGTGGTGTTTGCGTACTTTCGGCGCTACCGTAACCCAGCAATTTCAAAATTGAGCTAGGAAGTTCTAGAAAACGCCGCCTAGAGCAATTTTATGCGCTGATTTCGAATTTGAGAACAATTTTCCAAAATTTGCAGCTCTTCCAATTGTTCCTGGCCGGCAAACTGTACATGTATGTGAACACGGAAATGTGTGATGGATTGTGGCAGGTACAAGACTATCACAAAAATTTTGAAAATTTTAAGCCCCGCCTCTTTTTTGCAGGTTTGGGCTCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>196 172 170 128 88 87 87 24 14 14 10 10</canonical_bands>
                <polymorphic_bands>196 172 170 128 111 88 87 14 14 10 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAAACTATCAAAATCGAACTC</pcr_primer_p1>
		<pcr_primer_p2>TGTAGATTCTCAAGATTCAGTCAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGACACTTATTTTCAGCGCGCTAGCACAATTTGTCGTAAGATTAGGTGTTTGGCGTGGCGTTTGCGTACTTTCGGCGCTACCGTAATCCAAAAACCTTGAAAGTGAGCTAGAAAGTCCTGGAAAACGCTGTCTAGATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGACTGAATCTTGAGAATCTACA</canonical_amplicon>
		<polymorphic_amplicon>TTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGACACTTATTTTCAGCGCGCTAGCACAATTTGTCGTAAGATTAGGTGTTTGGCGTGGCGTTTGCGTACTTTCGGCGCTACCGTAATCCAAAAACCTTGAAAGTGAGCTARAAAGTCCTGGAAAACGCTGTCTAGATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGACTGAATCTTGAGAATCTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38272</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>437840</contig_pos>
        <strand></strand>
        <context>aacgctgtct[A/G]gatccatttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATCCAAAAACCTTGAAAGTGAGCTAGAAAGTCCTGGAAAACGCTGTCT</left_flank>
        <right_flank>GATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGATATGTGAGTTTTGGGGGCTTATGAAGCAGTTTTTAGCTTTTAAAACTATGAAAATCGAACTCTGCGTAGCTGATTATCCCTTGACACTTATTTTCAGCGCGCTAGCACAAAGTGTCGTAAGATTAGGTGTTTCACTTGGTGTTTGCGTACTTTTGGCGCTACCGTAACCCCAGAAATCTCAAAATTGAGCTAGCAGGTTCTAGAAAACGCTGTCTAGCATAACTTTTTGCGCTGATTTCGTATTTGATGATAGTTTTCGAATCAGACAATGTCTTGAGGGCTTAAAAATTCAAAAAAGGATTTAGGACAGCCGTAATCGTCTTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGACACTTATTTTCAGCGCGCTAGCACAATTTGTCGTAAGATTAGGTGTTTGGCGTGGCGTTTGCGTACTTTCGGCGCTACCGTAATCCAAAAACCTTGAAAGTGAGCTAGAAAGTCCTGGAAAACGCTGTCTAGATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGACTGAATCTTGAGAATCTACATGCTCAAAAAGGGGATCAAGGAGAGCCTTAAGAGTGTTAAAAGTATCAAAATCGAACTCTGCGTAGCTGTTTACCCCCCGGAAACCAATTTTCAGCGCTCTAGCTCTAATTGTCGTAGGATTCGGTGTTTGGCGTGGTGTTTGCGTACTTTCGGCGCTACCGTAACCCAGCAATTTCAAAATTGAGCTAGGAAGTTCTAGAAAACGCCGCCTAGAGCAATTTTATGCGCTGATTTCGAATTTGAGAACAATTTTCCAAAATTTGCAGCTCTTCCAATTGTTCCTGGCCGGCAAACTGTACATGTATGTGAACACGGAAATGTGTGATGGATTGTGGCAGGTACAAGACTATCACAAAAATTTTGAAAATTTTAAGCCCCGCCTCTTTTTTGCAGGTTTGGGCTCTCTCACTGCTGCTGGGAGCAATTGCC</canonical>
            <polymorphic>GGATATGTGAGTTTTGGGGGCTTATGAAGCAGTTTTTAGCTTTTAAAACTATGAAAATCGAACTCTGCGTAGCTGATTATCCCTTGACACTTATTTTCAGCGCGCTAGCACAAAGTGTCGTAAGATTAGGTGTTTCACTTGGTGTTTGCGTACTTTTGGCGCTACCGTAACCCCAGAAATCTCAAAATTGAGCTAGCAGGTTCTAGAAAACGCTGTCTAGCATAACTTTTTGCGCTGATTTCGTATTTGATGATAGTTTTCGAATCAGACAATGTCTTGAGGGCTTAAAAATTCAAAAAAGGATTTAGGACAGCCGTAATCGTCTTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGACACTTATTTTCAGCGCGCTAGCACAATTTGTCGTAAGATTAGGTGTTTGGCGTGGCGTTTGCGTACTTTCGGCGCTACCGTAATCCAAAAACCTTGAAAGTGAGCTAGAAAGTCCTGGAAAACGCTGTCTRGATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGACTGAATCTTGAGAATCTACATGCTCAAAAAGGGGATCAAGGAGAGCCTTAAGAGTGTTAAAAGTATCAAAATCGAACTCTGCGTAGCTGTTTACCCCCCGGAAACCAATTTTCAGCGCTCTAGCTCTAATTGTCGTAGGATTCGGTGTTTGGCGTGGTGTTTGCGTACTTTCGGCGCTACCGTAACCCAGCAATTTCAAAATTGAGCTAGGAAGTTCTAGAAAACGCCGCCTAGAGCAATTTTATGCGCTGATTTCGAATTTGAGAACAATTTTCCAAAATTTGCAGCTCTTCCAATTGTTCCTGGCCGGCAAACTGTACATGTATGTGAACACGGAAATGTGTGATGGATTGTGGCAGGTACAAGACTATCACAAAAATTTTGAAAATTTTAAGCCCCGCCTCTTTTTTGCAGGTTTGGGCTCTCTCACTGCTGCTGGGAGCAATTGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>219 172 170 105 88 87 87 24 14 14 10 10</canonical_bands>
                <polymorphic_bands>219 196 170 105 88 87 87 14 14 10 10</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>500 457 43</canonical_bands>
                <polymorphic_bands>543 457</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>295 269 234 202</canonical_bands>
                <polymorphic_bands>564 234 202</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAAACTATCAAAATCGAACTC</pcr_primer_p1>
		<pcr_primer_p2>TGTAGATTCTCAAGATTCAGTCAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGACACTTATTTTCAGCGCGCTAGCACAATTTGTCGTAAGATTAGGTGTTTGGCGTGGCGTTTGCGTACTTTCGGCGCTACCGTAATCCAAAAACCTTGAAAGTGAGCTAGAAAGTCCTGGAAAACGCTGTCTAGATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGACTGAATCTTGAGAATCTACA</canonical_amplicon>
		<polymorphic_amplicon>TTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGACACTTATTTTCAGCGCGCTAGCACAATTTGTCGTAAGATTAGGTGTTTGGCGTGGCGTTTGCGTACTTTCGGCGCTACCGTAATCCAAAAACCTTGAAAGTGAGCTAGAAAGTCCTGGAAAACGCTGTCTRGATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGACTGAATCTTGAGAATCTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38273</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>437998</contig_pos>
        <strand></strand>
        <context>ccggaaacca[A/T]ttttcagcgc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAAAGTATCAAAATCGAACTCTGCGTAGCTGTTTACCCCCCGGAAACCA</left_flank>
        <right_flank>TTTTCAGCGCTCTAGCTCTAATTGTCGTAGGATTCGGTGTTTGGCGTGGT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGCTACCGTAACCCCAGAAATCTCAAAATTGAGCTAGCAGGTTCTAGAAAACGCTGTCTAGCATAACTTTTTGCGCTGATTTCGTATTTGATGATAGTTTTCGAATCAGACAATGTCTTGAGGGCTTAAAAATTCAAAAAAGGATTTAGGACAGCCGTAATCGTCTTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGACACTTATTTTCAGCGCGCTAGCACAATTTGTCGTAAGATTAGGTGTTTGGCGTGGCGTTTGCGTACTTTCGGCGCTACCGTAATCCAAAAACCTTGAAAGTGAGCTAGAAAGTCCTGGAAAACGCTGTCTAGATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGACTGAATCTTGAGAATCTACATGCTCAAAAAGGGGATCAAGGAGAGCCTTAAGAGTGTTAAAAGTATCAAAATCGAACTCTGCGTAGCTGTTTACCCCCCGGAAACCAATTTTCAGCGCTCTAGCTCTAATTGTCGTAGGATTCGGTGTTTGGCGTGGTGTTTGCGTACTTTCGGCGCTACCGTAACCCAGCAATTTCAAAATTGAGCTAGGAAGTTCTAGAAAACGCCGCCTAGAGCAATTTTATGCGCTGATTTCGAATTTGAGAACAATTTTCCAAAATTTGCAGCTCTTCCAATTGTTCCTGGCCGGCAAACTGTACATGTATGTGAACACGGAAATGTGTGATGGATTGTGGCAGGTACAAGACTATCACAAAAATTTTGAAAATTTTAAGCCCCGCCTCTTTTTTGCAGGTTTGGGCTCTCTCACTGCTGCTGGGAGCAATTGCCGGTGGAAATATAGTGACAACGTCGATGGTCTGCATTCGAAAACTCAAAACGACACCATCCTACACGAATATCGTCGCGCTGACTCGAAAGTACAGTAGTCGCCACAAAATCAATCAGGCTCCGCCCACTTTTGACGCCACAGCATCTGCGTCGAGTCG</canonical>
            <polymorphic>GCGCTACCGTAACCCCAGAAATCTCAAAATTGAGCTAGCAGGTTCTAGAAAACGCTGTCTAGCATAACTTTTTGCGCTGATTTCGTATTTGATGATAGTTTTCGAATCAGACAATGTCTTGAGGGCTTAAAAATTCAAAAAAGGATTTAGGACAGCCGTAATCGTCTTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGACACTTATTTTCAGCGCGCTAGCACAATTTGTCGTAAGATTAGGTGTTTGGCGTGGCGTTTGCGTACTTTCGGCGCTACCGTAATCCAAAAACCTTGAAAGTGAGCTAGAAAGTCCTGGAAAACGCTGTCTAGATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGACTGAATCTTGAGAATCTACATGCTCAAAAAGGGGATCAAGGAGAGCCTTAAGAGTGTTAAAAGTATCAAAATCGAACTCTGCGTAGCTGTTTACCCCCCGGAAACCAWTTTTCAGCGCTCTAGCTCTAATTGTCGTAGGATTCGGTGTTTGGCGTGGTGTTTGCGTACTTTCGGCGCTACCGTAACCCAGCAATTTCAAAATTGAGCTAGGAAGTTCTAGAAAACGCCGCCTAGAGCAATTTTATGCGCTGATTTCGAATTTGAGAACAATTTTCCAAAATTTGCAGCTCTTCCAATTGTTCCTGGCCGGCAAACTGTACATGTATGTGAACACGGAAATGTGTGATGGATTGTGGCAGGTACAAGACTATCACAAAAATTTTGAAAATTTTAAGCCCCGCCTCTTTTTTGCAGGTTTGGGCTCTCTCACTGCTGCTGGGAGCAATTGCCGGTGGAAATATAGTGACAACGTCGATGGTCTGCATTCGAAAACTCAAAACGACACCATCCTACACGAATATCGTCGCGCTGACTCGAAAGTACAGTAGTCGCCACAAAATCAATCAGGCTCCGCCCACTTTTGACGCCACAGCATCTGCGTCGAGTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>263 165 104 104 83 64 57 38 27 21 20 16 11 10 9 8</canonical_bands>
                <polymorphic_bands>284 165 104 104 83 64 57 38 27 20 16 11 10 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGGAGAGCCTTAAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>CATTTCCGTGTTCACATACA</pcr_primer_p2>
		<pcr_amplicon_size>305</pcr_amplicon_size>
		<canonical_amplicon>CAAGGAGAGCCTTAAGAGTGTTAAAAGTATCAAAATCGAACTCTGCGTAGCTGTTTACCCCCCGGAAACCAATTTTCAGCGCTCTAGCTCTAATTGTCGTAGGATTCGGTGTTTGGCGTGGTGTTTGCGTACTTTCGGCGCTACCGTAACCCAGCAATTTCAAAATTGAGCTAGGAAGTTCTAGAAAACGCCGCCTAGAGCAATTTTATGCGCTGATTTCGAATTTGAGAACAATTTTCCAAAATTTGCAGCTCTTCCAATTGTTCCTGGCCGGCAAACTGTACATGTATGTGAACACGGAAATG</canonical_amplicon>
		<polymorphic_amplicon>CAAGGAGAGCCTTAAGAGTGTTAAAAGTATCAAAATCGAACTCTGCGTAGCTGTTTACCCCCCGGAAACCAWTTTTCAGCGCTCTAGCTCTAATTGTCGTAGGATTCGGTGTTTGGCGTGGTGTTTGCGTACTTTCGGCGCTACCGTAACCCAGCAATTTCAAAATTGAGCTAGGAAGTTCTAGAAAACGCCGCCTAGAGCAATTTTATGCGCTGATTTCGAATTTGAGAACAATTTTCCAAAATTTGCAGCTCTTCCAATTGTTCCTGGCCGGCAAACTGTACATGTATGTGAACACGGAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38274</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>438018</contig_pos>
        <strand></strand>
        <context>ctctagctct[A/G]atygtcgtag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGCGTAGCTGTTTACCCCCCGGAAACCAATTTTCAGCGCTCTAGCTCT</left_flank>
        <right_flank>ATTGTCGTAGGATTCGGTGTTTGGCGTGGTGTTTGCGTACTTTCGGCGCT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTCAAAATTGAGCTAGCAGGTTCTAGAAAACGCTGTCTAGCATAACTTTTTGCGCTGATTTCGTATTTGATGATAGTTTTCGAATCAGACAATGTCTTGAGGGCTTAAAAATTCAAAAAAGGATTTAGGACAGCCGTAATCGTCTTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGACACTTATTTTCAGCGCGCTAGCACAATTTGTCGTAAGATTAGGTGTTTGGCGTGGCGTTTGCGTACTTTCGGCGCTACCGTAATCCAAAAACCTTGAAAGTGAGCTAGAAAGTCCTGGAAAACGCTGTCTAGATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGACTGAATCTTGAGAATCTACATGCTCAAAAAGGGGATCAAGGAGAGCCTTAAGAGTGTTAAAAGTATCAAAATCGAACTCTGCGTAGCTGTTTACCCCCCGGAAACCAATTTTCAGCGCTCTAGCTCTAATTGTCGTAGGATTCGGTGTTTGGCGTGGTGTTTGCGTACTTTCGGCGCTACCGTAACCCAGCAATTTCAAAATTGAGCTAGGAAGTTCTAGAAAACGCCGCCTAGAGCAATTTTATGCGCTGATTTCGAATTTGAGAACAATTTTCCAAAATTTGCAGCTCTTCCAATTGTTCCTGGCCGGCAAACTGTACATGTATGTGAACACGGAAATGTGTGATGGATTGTGGCAGGTACAAGACTATCACAAAAATTTTGAAAATTTTAAGCCCCGCCTCTTTTTTGCAGGTTTGGGCTCTCTCACTGCTGCTGGGAGCAATTGCCGGTGGAAATATAGTGACAACGTCGATGGTCTGCATTCGAAAACTCAAAACGACACCATCCTACACGAATATCGTCGCGCTGACTCGAAAGTACAGTAGTCGCCACAAAATCAATCAGGCTCCGCCCACTTTTGACGCCACAGCATCTGCGTCGAGTCGAGCACCGCCACCACCCACTG</canonical>
            <polymorphic>ATCTCAAAATTGAGCTAGCAGGTTCTAGAAAACGCTGTCTAGCATAACTTTTTGCGCTGATTTCGTATTTGATGATAGTTTTCGAATCAGACAATGTCTTGAGGGCTTAAAAATTCAAAAAAGGATTTAGGACAGCCGTAATCGTCTTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGACACTTATTTTCAGCGCGCTAGCACAATTTGTCGTAAGATTAGGTGTTTGGCGTGGCGTTTGCGTACTTTCGGCGCTACCGTAATCCAAAAACCTTGAAAGTGAGCTAGAAAGTCCTGGAAAACGCTGTCTAGATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGACTGAATCTTGAGAATCTACATGCTCAAAAAGGGGATCAAGGAGAGCCTTAAGAGTGTTAAAAGTATCAAAATCGAACTCTGCGTAGCTGTTTACCCCCCGGAAACCAATTTTCAGCGCTCTAGCTCTRATTGTCGTAGGATTCGGTGTTTGGCGTGGTGTTTGCGTACTTTCGGCGCTACCGTAACCCAGCAATTTCAAAATTGAGCTAGGAAGTTCTAGAAAACGCCGCCTAGAGCAATTTTATGCGCTGATTTCGAATTTGAGAACAATTTTCCAAAATTTGCAGCTCTTCCAATTGTTCCTGGCCGGCAAACTGTACATGTATGTGAACACGGAAATGTGTGATGGATTGTGGCAGGTACAAGACTATCACAAAAATTTTGAAAATTTTAAGCCCCGCCTCTTTTTTGCAGGTTTGGGCTCTCTCACTGCTGCTGGGAGCAATTGCCGGTGGAAATATAGTGACAACGTCGATGGTCTGCATTCGAAAACTCAAAACGACACCATCCTACACGAATATCGTCGCGCTGACTCGAAAGTACAGTAGTCGCCACAAAATCAATCAGGCTCCGCCCACTTTTGACGCCACAGCATCTGCGTCGAGTCGAGCACCGCCACCACCCACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>263 185 104 104 83 64 57 38 21 20 16 11 10 9 8 7</canonical_bands>
                <polymorphic_bands>263 185 104 104 85 83 57 38 20 16 11 10 9 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGGAGAGCCTTAAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>CATTTCCGTGTTCACATACA</pcr_primer_p2>
		<pcr_amplicon_size>305</pcr_amplicon_size>
		<canonical_amplicon>CAAGGAGAGCCTTAAGAGTGTTAAAAGTATCAAAATCGAACTCTGCGTAGCTGTTTACCCCCCGGAAACCAATTTTCAGCGCTCTAGCTCTAATTGTCGTAGGATTCGGTGTTTGGCGTGGTGTTTGCGTACTTTCGGCGCTACCGTAACCCAGCAATTTCAAAATTGAGCTAGGAAGTTCTAGAAAACGCCGCCTAGAGCAATTTTATGCGCTGATTTCGAATTTGAGAACAATTTTCCAAAATTTGCAGCTCTTCCAATTGTTCCTGGCCGGCAAACTGTACATGTATGTGAACACGGAAATG</canonical_amplicon>
		<polymorphic_amplicon>CAAGGAGAGCCTTAAGAGTGTTAAAAGTATCAAAATCGAACTCTGCGTAGCTGTTTACCCCCCGGAAACCAATTTTCAGCGCTCTAGCTCTRATTGTCGTAGGATTCGGTGTTTGGCGTGGTGTTTGCGTACTTTCGGCGCTACCGTAACCCAGCAATTTCAAAATTGAGCTAGGAAGTTCTAGAAAACGCCGCCTAGAGCAATTTTATGCGCTGATTTCGAATTTGAGAACAATTTTCCAAAATTTGCAGCTCTTCCAATTGTTCCTGGCCGGCAAACTGTACATGTATGTGAACACGGAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38275</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>438021</contig_pos>
        <strand></strand>
        <context>tagctctrat[T/C]gtcgtaggat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCGTAGCTGTTTACCCCCCGGAAACCAATTTTCAGCGCTCTAGCTCTAAT</left_flank>
        <right_flank>GTCGTAGGATTCGGTGTTTGGCGTGGTGTTTGCGTACTTTCGGCGCTACC</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAAATTGAGCTAGCAGGTTCTAGAAAACGCTGTCTAGCATAACTTTTTGCGCTGATTTCGTATTTGATGATAGTTTTCGAATCAGACAATGTCTTGAGGGCTTAAAAATTCAAAAAAGGATTTAGGACAGCCGTAATCGTCTTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGACACTTATTTTCAGCGCGCTAGCACAATTTGTCGTAAGATTAGGTGTTTGGCGTGGCGTTTGCGTACTTTCGGCGCTACCGTAATCCAAAAACCTTGAAAGTGAGCTAGAAAGTCCTGGAAAACGCTGTCTAGATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGACTGAATCTTGAGAATCTACATGCTCAAAAAGGGGATCAAGGAGAGCCTTAAGAGTGTTAAAAGTATCAAAATCGAACTCTGCGTAGCTGTTTACCCCCCGGAAACCAATTTTCAGCGCTCTAGCTCTAATTGTCGTAGGATTCGGTGTTTGGCGTGGTGTTTGCGTACTTTCGGCGCTACCGTAACCCAGCAATTTCAAAATTGAGCTAGGAAGTTCTAGAAAACGCCGCCTAGAGCAATTTTATGCGCTGATTTCGAATTTGAGAACAATTTTCCAAAATTTGCAGCTCTTCCAATTGTTCCTGGCCGGCAAACTGTACATGTATGTGAACACGGAAATGTGTGATGGATTGTGGCAGGTACAAGACTATCACAAAAATTTTGAAAATTTTAAGCCCCGCCTCTTTTTTGCAGGTTTGGGCTCTCTCACTGCTGCTGGGAGCAATTGCCGGTGGAAATATAGTGACAACGTCGATGGTCTGCATTCGAAAACTCAAAACGACACCATCCTACACGAATATCGTCGCGCTGACTCGAAAGTACAGTAGTCGCCACAAAATCAATCAGGCTCCGCCCACTTTTGACGCCACAGCATCTGCGTCGAGTCGAGCACCGCCACCACCCACTGAGA</canonical>
            <polymorphic>TCAAAATTGAGCTAGCAGGTTCTAGAAAACGCTGTCTAGCATAACTTTTTGCGCTGATTTCGTATTTGATGATAGTTTTCGAATCAGACAATGTCTTGAGGGCTTAAAAATTCAAAAAAGGATTTAGGACAGCCGTAATCGTCTTGAAACTATCAAAATCGAACTCCTCGTAGCTGATTACCCATTGACACTTATTTTCAGCGCGCTAGCACAATTTGTCGTAAGATTAGGTGTTTGGCGTGGCGTTTGCGTACTTTCGGCGCTACCGTAATCCAAAAACCTTGAAAGTGAGCTAGAAAGTCCTGGAAAACGCTGTCTAGATCCATTTTTCACACTGATTCCAGATTTGATGTTAGTTTTCAGATCTGACTGAATCTTGAGAATCTACATGCTCAAAAAGGGGATCAAGGAGAGCCTTAAGAGTGTTAAAAGTATCAAAATCGAACTCTGCGTAGCTGTTTACCCCCCGGAAACCAATTTTCAGCGCTCTAGCTCTAATYGTCGTAGGATTCGGTGTTTGGCGTGGTGTTTGCGTACTTTCGGCGCTACCGTAACCCAGCAATTTCAAAATTGAGCTAGGAAGTTCTAGAAAACGCCGCCTAGAGCAATTTTATGCGCTGATTTCGAATTTGAGAACAATTTTCCAAAATTTGCAGCTCTTCCAATTGTTCCTGGCCGGCAAACTGTACATGTATGTGAACACGGAAATGTGTGATGGATTGTGGCAGGTACAAGACTATCACAAAAATTTTGAAAATTTTAAGCCCCGCCTCTTTTTTGCAGGTTTGGGCTCTCTCACTGCTGCTGGGAGCAATTGCCGGTGGAAATATAGTGACAACGTCGATGGTCTGCATTCGAAAACTCAAAACGACACCATCCTACACGAATATCGTCGCGCTGACTCGAAAGTACAGTAGTCGCCACAAAATCAATCAGGCTCCGCCCACTTTTGACGCCACAGCATCTGCGTCGAGTCGAGCACCGCCACCACCCACTGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>263 188 104 104 83 64 57 38 21 20 16 11 10 9 8 4</canonical_bands>
                <polymorphic_bands>263 188 104 104 85 83 57 38 20 16 11 10 9 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGGAGAGCCTTAAGAGTG</pcr_primer_p1>
		<pcr_primer_p2>CATTTCCGTGTTCACATACA</pcr_primer_p2>
		<pcr_amplicon_size>305</pcr_amplicon_size>
		<canonical_amplicon>CAAGGAGAGCCTTAAGAGTGTTAAAAGTATCAAAATCGAACTCTGCGTAGCTGTTTACCCCCCGGAAACCAATTTTCAGCGCTCTAGCTCTAATTGTCGTAGGATTCGGTGTTTGGCGTGGTGTTTGCGTACTTTCGGCGCTACCGTAACCCAGCAATTTCAAAATTGAGCTAGGAAGTTCTAGAAAACGCCGCCTAGAGCAATTTTATGCGCTGATTTCGAATTTGAGAACAATTTTCCAAAATTTGCAGCTCTTCCAATTGTTCCTGGCCGGCAAACTGTACATGTATGTGAACACGGAAATG</canonical_amplicon>
		<polymorphic_amplicon>CAAGGAGAGCCTTAAGAGTGTTAAAAGTATCAAAATCGAACTCTGCGTAGCTGTTTACCCCCCGGAAACCAATTTTCAGCGCTCTAGCTCTAATYGTCGTAGGATTCGGTGTTTGGCGTGGTGTTTGCGTACTTTCGGCGCTACCGTAACCCAGCAATTTCAAAATTGAGCTAGGAAGTTCTAGAAAACGCCGCCTAGAGCAATTTTATGCGCTGATTTCGAATTTGAGAACAATTTTCCAAAATTTGCAGCTCTTCCAATTGTTCCTGGCCGGCAAACTGTACATGTATGTGAACACGGAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38276</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>440265</contig_pos>
        <strand>+</strand>
        <context>CGTTCGCATT[C/G]CACYCACTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCAATCTCGACGGTCCGGCAACATTGGTATCAGACGTAGCCGTTCGCATT</left_flank>
        <right_flank>CACCCACTTCCTGCTCGAGCTTCTGGATGTCCATTTCGTTGTTATCTCTT</right_flank>
        <qual_score>130</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATTTCTTCAAAACTAGACATGAATATACTCATTTGAAAACTCTAGACAAGCCAAGTCTGATAGCAATAATTTCATGTACCTAAAATAACTGTAGCTTGAGATACGGTAGTTTTAATTACTAAAAACTTTCATTGGAAACCAATTTTTAAAAAAAGAAATTCATTCAGTCTATAATCTTTTGAATTTGAGATTTTTTAGAAATCTATCTAATCAACACCACAATAAAATTTATTCTATCTTATAATTCACATAAATCGAGTTATACGAAATGTTCACAGCTTCCTGACATTCGTATCCGATGGTTGAGTCCCGAGAGACTCGGCCACTGTCATTCCGGCCTCCGCGGCCGCTGCCTTCTTCTTCTTCCCGGCCTTCTTCTTCTTCTCCTTGGTATCTGGTGTCTTGGATCGTTTGCTCTTCTGTTGACTGATCGGTGCTTCAAGACTCAATCTCGACGGTCCGGCAACATTGGTATCAGACGTAGCCGTTCGCATTCCACCCACTTCCTGCTCGAGCTTCTGGATGTCCATTTCGTTGTTATCTCTTAGAGACATCACGTTGGAAGAGCTAGAAGCAGATGGTGTGGCTGGAGGTGGAGTTTGGGCCGCTTTCAACTCCAAGACCGTTTGCTTGTATTTCTTCTCCATCTCTTCTGCCTTCTGCTTATCCGTCATGTGATTTTTCGATGTCAATTTGGCGTCGATGGCTTTGAATGTCGCATCGGTGACTCCTTTCGCCAAATACTCCTTCGCTGGTACGATAAGATTGCCGTAGATCTTCAGAGCTTTTGCAGTCATCGCGACGCCAACTCTCTGAAAATTGGAATTGGAAACTCCTTGAGCAAAGGCCATGAGCAACTTTGAGCTCAATTATCTCGATTCTCGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATATTGTTCTTGTTAAGAAAAATATTTTATAAGTTGACACATTTTTGATAACTTTTGAAGGGACCGAGATAAATTGACTC</canonical>
            <polymorphic>AAAAATTTCTTCAAAACTAGACATGAATATACTCATTTGAAAACTCTAGACAAGCCAAGTCTGATAGCAATAATTTCATGTACCTAAAATAACTGTAGCTTGAGATACGGTAGTTTTAATTACTAAAAACTTTCATTGGAAACCAATTTTTAAAAAAAGAAATTCATTCAGTCTATAATCTTTTGAATTTGAGATTTTTTAGAAATCTATCTAATCAACACCACAATAAAATTTATTCTATCTTATAATTCACATAAATCGAGTTATACGAAATGTTCACAGCTTCCTGACATTCGTATCCGATGGTTGAGTCCCGAGAGACTCGGCCACTGTCATTCCGGCCTCCGCGGCCGCTGCCTTCTTCTTCTTCCCGGCCTTCTTCTTCTTCTCCTTGGTATCTGGTGTCTTGGATCGTTTGCTCTTCTGTTGACTGATCGGTGCTTCAAGACTCAATCTCGACGGTCCGGCAACATTGGTATCAGACGTAGCCGTTCGCATTSCACCCACTTCCTGCTCGAGCTTCTGGATGTCCATTTCGTTGTTATCTCTTAGAGACATCACGTTGGAAGAGCTAGAAGCAGATGGTGTGGCTGGAGGTGGAGTTTGGGCCGCTTTCAACTCCAAGACCGTTTGCTTGTATTTCTTCTCCATCTCTTCTGCCTTCTGCTTATCCGTCATGTGATTTTTCGATGTCAATTTGGCGTCGATGGCTTTGAATGTCGCATCGGTGACTCCTTTCGCCAAATACTCCTTCGCTGGTACGATAAGATTGCCGTAGATCTTCAGAGCTTTTGCAGTCATCGCGACGCCAACTCTCTGAAAATTGGAATTGGAAACTCCTTGAGCAAAGGCCATGAGCAACTTTGAGCTCAATTATCTCGATTCTCGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATATTGTTCTTGTTAAGAAAAATATTTTATAAGTTGACACATTTTTGATAACTTTTGAAGGGACCGAGATAAATTGACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTTGCTCTTCTGTTGACTGAT</pcr_primer_p1>
		<pcr_primer_p2>GAAGAGATGGAGAAGAAATACAA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GTTTGCTCTTCTGTTGACTGATCGGTGCTTCAAGACTCAATCTCGACGGTCCGGCAACATTGGTATCAGACGTAGCCGTTCGCATTCCACCCACTTCCTGCTCGAGCTTCTGGATGTCCATTTCGTTGTTATCTCTTAGAGACATCACGTTGGAAGAGCTAGAAGCAGATGGTGTGGCTGGAGGTGGAGTTTGGGCCGCTTTCAACTCCAAGACCGTTTGCTTGTATTTCTTCTCCATCTCTTC</canonical_amplicon>
		<polymorphic_amplicon>GTTTGCTCTTCTGTTGACTGATCGGTGCTTCAAGACTCAATCTCGACGGTCCGGCAACATTGGTATCAGACGTAGCCGTTCGCATTSCACCCACTTCCTGCTCGAGCTTCTGGATGTCCATTTCGTTGTTATCTCTTAGAGACATCACGTTGGAAGAGCTAGAAGCAGATGGTGTGGCTGGAGGTGGAGTTTGGGCCGCTTTCAACTCCAAGACCGTTTGCTTGTATTTCTTCTCCATCTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38277</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>440664</contig_pos>
        <strand></strand>
        <context>tgaaagatat[C/T]aaaaagttgt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGCCATGAGCAACTTTGAGCTCAATTATCTCGATTCTCGTGAAAGATAT</left_flank>
        <right_flank>AAAAAGTTGTCAACTGATAAAATATTGTTCTTGTTAAGAAAAATATTTTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTGTCTTGGATCGTTTGCTCTTCTGTTGACTGATCGGTGCTTCAAGACTCAATCTCGACGGTCCGGCAACATTGGTATCAGACGTAGCCGTTCGCATTCCACCCACTTCCTGCTCGAGCTTCTGGATGTCCATTTCGTTGTTATCTCTTAGAGACATCACGTTGGAAGAGCTAGAAGCAGATGGTGTGGCTGGAGGTGGAGTTTGGGCCGCTTTCAACTCCAAGACCGTTTGCTTGTATTTCTTCTCCATCTCTTCTGCCTTCTGCTTATCCGTCATGTGATTTTTCGATGTCAATTTGGCGTCGATGGCTTTGAATGTCGCATCGGTGACTCCTTTCGCCAAATACTCCTTCGCTGGTACGATAAGATTGCCGTAGATCTTCAGAGCTTTTGCAGTCATCGCGACGCCAACTCTCTGAAAATTGGAATTGGAAACTCCTTGAGCAAAGGCCATGAGCAACTTTGAGCTCAATTATCTCGATTCTCGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATATTGTTCTTGTTAAGAAAAATATTTTATAAGTTGACACATTTTTGATAACTTTTGAAGGGACCGAGATAAATTGACTCAAAGTTAAACGGTCGGAAGCTGCAGCTCAGGCGGCGAGCAACTTCGAGCCCTTATATCTCTTCTCCTGTGAAAGTTATCAAAAATTCGTCAACTGATAAAATGTTTCCCATGAGATGAGATGTTTTTTATCAGTTGACAAATTTTGGGTATCTCATCAAACAGCTTAGATAATTGGGCTCTAAGAAAAAGGTTTAGGTGGGCTCTTATTAAGGGTAGTTTCCAGACCGTCATCTTTGAGCTCAATTATCTTGACTCCTTTGAAAAATATCAAAAATCGGTCAACTGATAAAATATTGCTCATCTTATGACAAACATTTTCACAGTTAACAGATTTTGGATATCTCATAAAAGATCTGAGATAATTGAGCTGAAAGTTGACAGTAGAATCAAATTTTCGT</canonical>
            <polymorphic>TGGTGTCTTGGATCGTTTGCTCTTCTGTTGACTGATCGGTGCTTCAAGACTCAATCTCGACGGTCCGGCAACATTGGTATCAGACGTAGCCGTTCGCATTCCACCCACTTCCTGCTCGAGCTTCTGGATGTCCATTTCGTTGTTATCTCTTAGAGACATCACGTTGGAAGAGCTAGAAGCAGATGGTGTGGCTGGAGGTGGAGTTTGGGCCGCTTTCAACTCCAAGACCGTTTGCTTGTATTTCTTCTCCATCTCTTCTGCCTTCTGCTTATCCGTCATGTGATTTTTCGATGTCAATTTGGCGTCGATGGCTTTGAATGTCGCATCGGTGACTCCTTTCGCCAAATACTCCTTCGCTGGTACGATAAGATTGCCGTAGATCTTCAGAGCTTTTGCAGTCATCGCGACGCCAACTCTCTGAAAATTGGAATTGGAAACTCCTTGAGCAAAGGCCATGAGCAACTTTGAGCTCAATTATCTCGATTCTCGTGAAAGATATYAAAAAGTTGTCAACTGATAAAATATTGTTCTTGTTAAGAAAAATATTTTATAAGTTGACACATTTTTGATAACTTTTGAAGGGACCGAGATAAATTGACTCAAAGTTAAACGGTCGGAAGCTGCAGCTCAGGCGGCGAGCAACTTCGAGCCCTTATATCTCTTCTCCTGTGAAAGTTATCAAAAATTCGTCAACTGATAAAATGTTTCCCATGAGATGAGATGTTTTTTATCAGTTGACAAATTTTGGGTATCTCATCAAACAGCTTAGATAATTGGGCTCTAAGAAAAAGGTTTAGGTGGGCTCTTATTAAGGGTAGTTTCCAGACCGTCATCTTTGAGCTCAATTATCTTGACTCCTTTGAAAAATATCAAAAATCGGTCAACTGATAAAATATTGCTCATCTTATGACAAACATTTTCACAGTTAACAGATTTTGGATATCTCATAAAAGATCTGAGATAATTGAGCTGAAAGTTGACAGTAGAATCAAATTTTCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>497 444 59</canonical_bands>
                <polymorphic_bands>941 59</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAGAGCTTTTGCAGTCAT</pcr_primer_p1>
		<pcr_primer_p2>CCTAAAAACTACGAAAATTTGATT</pcr_primer_p2>
		<pcr_amplicon_size>628</pcr_amplicon_size>
		<canonical_amplicon>TTCAGAGCTTTTGCAGTCATCGCGACGCCAACTCTCTGAAAATTGGAATTGGAAACTCCTTGAGCAAAGGCCATGAGCAACTTTGAGCTCAATTATCTCGATTCTCGTGAAAGATATCAAAAAGTTGTCAACTGATAAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTCAGAGCTTTTGCAGTCATCGCGACGCCAACTCTCTGAAAATTGGAATTGGAAACTCCTTGAGCAAAGGCCATGAGCAACTTTGAGCTCAATTATCTCGATTCTCGTGAAAGATATYAAAAAGTTGTCAACTGATAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38278</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>440705</contig_pos>
        <strand></strand>
        <context>ttgttaagaa[A/G]aatattttat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAGATATCAAAAAGTTGTCAACTGATAAAATATTGTTCTTGTTAAGAA</left_flank>
        <right_flank>AATATTTTATAAGTTGACACATTTTTGATAACTTTTGAAGGGACCGAGAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCAAGACTCAATCTCGACGGTCCGGCAACATTGGTATCAGACGTAGCCGTTCGCATTCCACCCACTTCCTGCTCGAGCTTCTGGATGTCCATTTCGTTGTTATCTCTTAGAGACATCACGTTGGAAGAGCTAGAAGCAGATGGTGTGGCTGGAGGTGGAGTTTGGGCCGCTTTCAACTCCAAGACCGTTTGCTTGTATTTCTTCTCCATCTCTTCTGCCTTCTGCTTATCCGTCATGTGATTTTTCGATGTCAATTTGGCGTCGATGGCTTTGAATGTCGCATCGGTGACTCCTTTCGCCAAATACTCCTTCGCTGGTACGATAAGATTGCCGTAGATCTTCAGAGCTTTTGCAGTCATCGCGACGCCAACTCTCTGAAAATTGGAATTGGAAACTCCTTGAGCAAAGGCCATGAGCAACTTTGAGCTCAATTATCTCGATTCTCGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATATTGTTCTTGTTAAGAAAAATATTTTATAAGTTGACACATTTTTGATAACTTTTGAAGGGACCGAGATAAATTGACTCAAAGTTAAACGGTCGGAAGCTGCAGCTCAGGCGGCGAGCAACTTCGAGCCCTTATATCTCTTCTCCTGTGAAAGTTATCAAAAATTCGTCAACTGATAAAATGTTTCCCATGAGATGAGATGTTTTTTATCAGTTGACAAATTTTGGGTATCTCATCAAACAGCTTAGATAATTGGGCTCTAAGAAAAAGGTTTAGGTGGGCTCTTATTAAGGGTAGTTTCCAGACCGTCATCTTTGAGCTCAATTATCTTGACTCCTTTGAAAAATATCAAAAATCGGTCAACTGATAAAATATTGCTCATCTTATGACAAACATTTTCACAGTTAACAGATTTTGGATATCTCATAAAAGATCTGAGATAATTGAGCTGAAAGTTGACAGTAGAATCAAATTTTCGTAGTTTTTAGGCATTTTTAAACCAGTTTTCAGTGAACTTTTC</canonical>
            <polymorphic>CTTCAAGACTCAATCTCGACGGTCCGGCAACATTGGTATCAGACGTAGCCGTTCGCATTCCACCCACTTCCTGCTCGAGCTTCTGGATGTCCATTTCGTTGTTATCTCTTAGAGACATCACGTTGGAAGAGCTAGAAGCAGATGGTGTGGCTGGAGGTGGAGTTTGGGCCGCTTTCAACTCCAAGACCGTTTGCTTGTATTTCTTCTCCATCTCTTCTGCCTTCTGCTTATCCGTCATGTGATTTTTCGATGTCAATTTGGCGTCGATGGCTTTGAATGTCGCATCGGTGACTCCTTTCGCCAAATACTCCTTCGCTGGTACGATAAGATTGCCGTAGATCTTCAGAGCTTTTGCAGTCATCGCGACGCCAACTCTCTGAAAATTGGAATTGGAAACTCCTTGAGCAAAGGCCATGAGCAACTTTGAGCTCAATTATCTCGATTCTCGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATATTGTTCTTGTTAAGAARAATATTTTATAAGTTGACACATTTTTGATAACTTTTGAAGGGACCGAGATAAATTGACTCAAAGTTAAACGGTCGGAAGCTGCAGCTCAGGCGGCGAGCAACTTCGAGCCCTTATATCTCTTCTCCTGTGAAAGTTATCAAAAATTCGTCAACTGATAAAATGTTTCCCATGAGATGAGATGTTTTTTATCAGTTGACAAATTTTGGGTATCTCATCAAACAGCTTAGATAATTGGGCTCTAAGAAAAAGGTTTAGGTGGGCTCTTATTAAGGGTAGTTTCCAGACCGTCATCTTTGAGCTCAATTATCTTGACTCCTTTGAAAAATATCAAAAATCGGTCAACTGATAAAATATTGCTCATCTTATGACAAACATTTTCACAGTTAACAGATTTTGGATATCTCATAAAAGATCTGAGATAATTGAGCTGAAAGTTGACAGTAGAATCAAATTTTCGTAGTTTTTAGGCATTTTTAAACCAGTTTTCAGTGAACTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAGAGCTTTTGCAGTCAT</pcr_primer_p1>
		<pcr_primer_p2>CCTAAAAACTACGAAAATTTGATT</pcr_primer_p2>
		<pcr_amplicon_size>628</pcr_amplicon_size>
		<canonical_amplicon>TTCAGAGCTTTTGCAGTCATCGCGACGCCAACTCTCTGAAAATTGGAATTGGAAACTCCTTGAGCAAAGGCCATGAGCAACTTTGAGCTCAATTATCTCGATTCTCGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATATTGTTCTTGTTAAGAAAAATATTTTATAAGTTGACACATTTTTGATAACTTTTGAAGGGACCGAGATAAATTGACTCAAAGTTAAACGGTCGGAAGCTGCAGCTCAGGCGGCGAGCAACTTCGAGCCCTTATATCTCTTCTCCTGTGAAAGTTATCAAAAATTCGTCAACTGATAAAATGTTTCCCATGAGATGAGATGTTTTTTATCAGTTGACAAATTTTGGGTATCTCATCAAACAGCTTAGATAATTGGGCTCTAAGAAAAAGGTTTAGGTGGGCTCTTATTAAGGGTAGTTTCCAGACCGTCATCTTTGAGCTCAATTATCTTGACTCCTTTGAAAAATATCAAAAATCGGTCAACTGATAAAATATTGCTCATCTTATGACAAACATTTTCACAGTTAACAGATTTTGGATATCTCATAAAAGATCTGAGATAATTGAGCTGAAAGTTGACAGTAGAATCAAATTTTCGTAGTTTTTAGG</canonical_amplicon>
		<polymorphic_amplicon>TTCAGAGCTTTTGCAGTCATCGCGACGCCAACTCTCTGAAAATTGGAATTGGAAACTCCTTGAGCAAAGGCCATGAGCAACTTTGAGCTCAATTATCTCGATTCTCGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATATTGTTCTTGTTAAGAARAATATTTTATAAGTTGACACATTTTTGATAACTTTTGAAGGGACCGAGATAAATTGACTCAAAGTTAAACGGTCGGAAGCTGCAGCTCAGGCGGCGAGCAACTTCGAGCCCTTATATCTCTTCTCCTGTGAAAGTTATCAAAAATTCGTCAACTGATAAAATGTTTCCCATGAGATGAGATGTTTTTTATCAGTTGACAAATTTTGGGTATCTCATCAAACAGCTTAGATAATTGGGCTCTAAGAAAAAGGTTTAGGTGGGCTCTTATTAAGGGTAGTTTCCAGACCGTCATCTTTGAGCTCAATTATCTTGACTCCTTTGAAAAATATCAAAAATCGGTCAACTGATAAAATATTGCTCATCTTATGACAAACATTTTCACAGTTAACAGATTTTGGATATCTCATAAAAGATCTGAGATAATTGAGCTGAAAGTTGACAGTAGAATCAAATTTTCGTAGTTTTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38279</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>440757</contig_pos>
        <strand></strand>
        <context>gaccgagata[A/C]attgactcaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATATTTTATAAGTTGACACATTTTTGATAACTTTTGAAGGGACCGAGATA</left_flank>
        <right_flank>ATTGACTCAAAGTTAAACGGTCGGAAGCTGCAGCTCAGGCGGCGAGCAAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGCATTCCACCCACTTCCTGCTCGAGCTTCTGGATGTCCATTTCGTTGTTATCTCTTAGAGACATCACGTTGGAAGAGCTAGAAGCAGATGGTGTGGCTGGAGGTGGAGTTTGGGCCGCTTTCAACTCCAAGACCGTTTGCTTGTATTTCTTCTCCATCTCTTCTGCCTTCTGCTTATCCGTCATGTGATTTTTCGATGTCAATTTGGCGTCGATGGCTTTGAATGTCGCATCGGTGACTCCTTTCGCCAAATACTCCTTCGCTGGTACGATAAGATTGCCGTAGATCTTCAGAGCTTTTGCAGTCATCGCGACGCCAACTCTCTGAAAATTGGAATTGGAAACTCCTTGAGCAAAGGCCATGAGCAACTTTGAGCTCAATTATCTCGATTCTCGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATATTGTTCTTGTTAAGAAAAATATTTTATAAGTTGACACATTTTTGATAACTTTTGAAGGGACCGAGATAAATTGACTCAAAGTTAAACGGTCGGAAGCTGCAGCTCAGGCGGCGAGCAACTTCGAGCCCTTATATCTCTTCTCCTGTGAAAGTTATCAAAAATTCGTCAACTGATAAAATGTTTCCCATGAGATGAGATGTTTTTTATCAGTTGACAAATTTTGGGTATCTCATCAAACAGCTTAGATAATTGGGCTCTAAGAAAAAGGTTTAGGTGGGCTCTTATTAAGGGTAGTTTCCAGACCGTCATCTTTGAGCTCAATTATCTTGACTCCTTTGAAAAATATCAAAAATCGGTCAACTGATAAAATATTGCTCATCTTATGACAAACATTTTCACAGTTAACAGATTTTGGATATCTCATAAAAGATCTGAGATAATTGAGCTGAAAGTTGACAGTAGAATCAAATTTTCGTAGTTTTTAGGCATTTTTAAACCAGTTTTCAGTGAACTTTTCTTAATTTCAAGACTGTTCGAGACTCAAACTTTGAGTTGTGAAATTTTCAAAA</canonical>
            <polymorphic>TCGCATTCCACCCACTTCCTGCTCGAGCTTCTGGATGTCCATTTCGTTGTTATCTCTTAGAGACATCACGTTGGAAGAGCTAGAAGCAGATGGTGTGGCTGGAGGTGGAGTTTGGGCCGCTTTCAACTCCAAGACCGTTTGCTTGTATTTCTTCTCCATCTCTTCTGCCTTCTGCTTATCCGTCATGTGATTTTTCGATGTCAATTTGGCGTCGATGGCTTTGAATGTCGCATCGGTGACTCCTTTCGCCAAATACTCCTTCGCTGGTACGATAAGATTGCCGTAGATCTTCAGAGCTTTTGCAGTCATCGCGACGCCAACTCTCTGAAAATTGGAATTGGAAACTCCTTGAGCAAAGGCCATGAGCAACTTTGAGCTCAATTATCTCGATTCTCGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATATTGTTCTTGTTAAGAAAAATATTTTATAAGTTGACACATTTTTGATAACTTTTGAAGGGACCGAGATAMATTGACTCAAAGTTAAACGGTCGGAAGCTGCAGCTCAGGCGGCGAGCAACTTCGAGCCCTTATATCTCTTCTCCTGTGAAAGTTATCAAAAATTCGTCAACTGATAAAATGTTTCCCATGAGATGAGATGTTTTTTATCAGTTGACAAATTTTGGGTATCTCATCAAACAGCTTAGATAATTGGGCTCTAAGAAAAAGGTTTAGGTGGGCTCTTATTAAGGGTAGTTTCCAGACCGTCATCTTTGAGCTCAATTATCTTGACTCCTTTGAAAAATATCAAAAATCGGTCAACTGATAAAATATTGCTCATCTTATGACAAACATTTTCACAGTTAACAGATTTTGGATATCTCATAAAAGATCTGAGATAATTGAGCTGAAAGTTGACAGTAGAATCAAATTTTCGTAGTTTTTAGGCATTTTTAAACCAGTTTTCAGTGAACTTTTCTTAATTTCAAGACTGTTCGAGACTCAAACTTTGAGTTGTGAAATTTTCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>202 127 120 119 91 72 57 52 44 39 31 29 11 6</canonical_bands>
                <polymorphic_bands>211 202 127 119 72 57 52 44 39 31 29 11 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAGAGCTTTTGCAGTCAT</pcr_primer_p1>
		<pcr_primer_p2>CCTAAAAACTACGAAAATTTGATT</pcr_primer_p2>
		<pcr_amplicon_size>628</pcr_amplicon_size>
		<canonical_amplicon>TTCAGAGCTTTTGCAGTCATCGCGACGCCAACTCTCTGAAAATTGGAATTGGAAACTCCTTGAGCAAAGGCCATGAGCAACTTTGAGCTCAATTATCTCGATTCTCGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATATTGTTCTTGTTAAGAAAAATATTTTATAAGTTGACACATTTTTGATAACTTTTGAAGGGACCGAGATAAATTGACTCAAAGTTAAACGGTCGGAAGCTGCAGCTCAGGCGGCGAGCAACTTCGAGCCCTTATATCTCTTCTCCTGTGAAAGTTATCAAAAATTCGTCAACTGATAAAATGTTTCCCATGAGATGAGATGTTTTTTATCAGTTGACAAATTTTGGGTATCTCATCAAACAGCTTAGATAATTGGGCTCTAAGAAAAAGGTTTAGGTGGGCTCTTATTAAGGGTAGTTTCCAGACCGTCATCTTTGAGCTCAATTATCTTGACTCCTTTGAAAAATATCAAAAATCGGTCAACTGATAAAATATTGCTCATCTTATGACAAACATTTTCACAGTTAACAGATTTTGGATATCTCATAAAAGATCTGAGATAATTGAGCTGAAAGTTGACAGTAGAATCAAATTTTCGTAGTTTTTAGG</canonical_amplicon>
		<polymorphic_amplicon>TTCAGAGCTTTTGCAGTCATCGCGACGCCAACTCTCTGAAAATTGGAATTGGAAACTCCTTGAGCAAAGGCCATGAGCAACTTTGAGCTCAATTATCTCGATTCTCGTGAAAGATATCAAAAAGTTGTCAACTGATAAAATATTGTTCTTGTTAAGAAAAATATTTTATAAGTTGACACATTTTTGATAACTTTTGAAGGGACCGAGATAMATTGACTCAAAGTTAAACGGTCGGAAGCTGCAGCTCAGGCGGCGAGCAACTTCGAGCCCTTATATCTCTTCTCCTGTGAAAGTTATCAAAAATTCGTCAACTGATAAAATGTTTCCCATGAGATGAGATGTTTTTTATCAGTTGACAAATTTTGGGTATCTCATCAAACAGCTTAGATAATTGGGCTCTAAGAAAAAGGTTTAGGTGGGCTCTTATTAAGGGTAGTTTCCAGACCGTCATCTTTGAGCTCAATTATCTTGACTCCTTTGAAAAATATCAAAAATCGGTCAACTGATAAAATATTGCTCATCTTATGACAAACATTTTCACAGTTAACAGATTTTGGATATCTCATAAAAGATCTGAGATAATTGAGCTGAAAGTTGACAGTAGAATCAAATTTTCGTAGTTTTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38280</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>495403</contig_pos>
        <strand></strand>
        <context>gatctaccaa[G/A]ttatttgtga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CCTGTTGCATTCTATGCATACTTTCATTTGTTTTATATTTGATCTACCAA</left_flank>
        <right_flank>TTATTTGTGATCCACCTAAGAAGTGGCCCACCTAAGAAGAGCGCCCTTCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCAACACCTTATTTTATGATCACTCAAAATTCTATTCTCGTACAATTTTTATCCCAGCTACTTCTTTGTATTTCGTTTTTTCCTCTCTTATTCTCCTCCAAAATCATATTTGTCGACGTGCCTTCCATACTTGAGAAAGCCTTCTTCCAAGCAACTGGCTCGTCATATTTTTTTTCTCCTCCGCTCTCAACACATCTTCAATCTTCATATATTCCGTTTTTCAAAACGTCTCTAGGGAGCGTCGCTCATCGGTCTCCCAACCAACCAATTTCCAGTTTTGTTCGGGAGCTCACGCCCCCCCCCCCGAAACTTCTTCTATTTCTTTCTTCGTCTCCTTAACTTTCTGCCCTAAACTCTTCTTCCTCTTTTTTCCATTCCCATATTCAATTTGCGGGACCGCCGCACTTTTGGTCAGTCCACTTTATCCTAAAGAGTCTCTTTTTACTACCTGTTGCATTCTATGCATACTTTCATTTGTTTTATATTTGATCTACCAAGTTATTTGTGATCCACCTAAGAAGTGGCCCACCTAAGAAGAGCGCCCTTCTCTGGCACTCTTCTTATTAGTTGTTTCATTGGTCATAATTCTTCATTTGACTGACAACCATTCTCAGTCTGTCCTAGTCTCTCCCCAACCTTCTCTACATATCCCCCATCTATTCTTGTACACTTTTAGTACCTGAATAAATCTGTATTCTATAACTACTATTCGTGTTCCTTGAACCGGCCAGAATGCCGGATCCTAAGGACTCAACACTACCTACATTTTTTCCAGATCTTATTCTTACATTTAGTATGACATCTTGCTTTTGCCGCATGAGTTATTCATTTATTCTTTCATTTCCTTTCTTTCATCTTTTGCCCTATTGTTCAGTTTCCCTTCATCCCCTCATTTTTCATCATCACTCAATTATTTTTCATTTCTTGTGCTCATTTTTGCTCTTTCTTCCGCTTTTCTCCTTCCTTTGCAATCCACGTCATTCATTTATTTCAGCGAA</canonical>
            <polymorphic>GTTCAACACCTTATTTTATGATCACTCAAAATTCTATTCTCGTACAATTTTTATCCCAGCTACTTCTTTGTATTTCGTTTTTTCCTCTCTTATTCTCCTCCAAAATCATATTTGTCGACGTGCCTTCCATACTTGAGAAAGCCTTCTTCCAAGCAACTGGCTCGTCATATTTTTTTTCTCCTCCGCTCTCAACACATCTTCAATCTTCATATATTCCGTTTTTCAAAACGTCTCTAGGGAGCGTCGCTCATCGGTCTCCCAACCAACCAATTTCCAGTTTTGTTCGGGAGCTCACGCCCCCCCCCCCGAAACTTCTTCTATTTCTTTCTTCGTCTCCTTAACTTTCTGCCCTAAACTCTTCTTCCTCTTTTTTCCATTCCCATATTCAATTTGCGGGACCGCCGCACTTTTGGTCAGTCCACTTTATCCTAAAGAGTCTCTTTTTACTACCTGTTGCATTCTATGCATACTTTCATTTGTTTTATATTTGATCTACCAARTTATTTGTGATCCACCTAAGAAGTGGCCCACCTAAGAAGAGCGCCCTTCTCTGGCACTCTTCTTATTAGTTGTTTCATTGGTCATAATTCTTCATTTGACTGACAACCATTCTCAGTCTGTCCTAGTCTCTCCCCAACCTTCTCTACATATCCCCCATCTATTCTTGTACACTTTTAGTACCTGAATAAATCTGTATTCTATAACTACTATTCGTGTTCCTTGAACCGGCCAGAATGCCGGATCCTAAGGACTCAACACTACCTACATTTTTTCCAGATCTTATTCTTACATTTAGTATGACATCTTGCTTTTGCCGCATGAGTTATTCATTTATTCTTTCATTTCCTTTCTTTCATCTTTTGCCCTATTGTTCAGTTTCCCTTCATCCCCTCATTTTTCATCATCACTCAATTATTTTTCATTTCTTGTGCTCATTTTTGCTCTTTCTTCCGCTTTTCTCCTTCCTTTGCAATCCACGTCATTCATTTATTTCAGCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTCCACTTTATCCTAAAGAGTC</pcr_primer_p1>
		<pcr_primer_p2>AATGTAAGAATAAGATCTGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>379</pcr_amplicon_size>
		<canonical_amplicon>CAGTCCACTTTATCCTAAAGAGTCTCTTTTTACTACCTGTTGCATTCTATGCATACTTTCATTTGTTTTATATTTGATCTACCAAGTTATTTGTGATCCACCTAAGAAGTGGCCCACCTAAGAAGAGCGCCCTTCTCTGGCACTCTTCTTATTAGTTGTTTCATTGGTCATAATTCTTCATTTGACTGACAACCATTCTCAGTCTGTCCTAGTCTCTCCCCAACCTTCTCTACATATCCCCCATCTATTCTTGTACACTTTTAGTACCTGAATAAATCTGTATTCTATAACTACTATTCGTGTTCCTTGAACCGGCCAGAATGCCGGATCCTAAGGACTCAACACTACCTACATTTTTTCCAGATCTTATTCTTACATT</canonical_amplicon>
		<polymorphic_amplicon>CAGTCCACTTTATCCTAAAGAGTCTCTTTTTACTACCTGTTGCATTCTATGCATACTTTCATTTGTTTTATATTTGATCTACCAARTTATTTGTGATCCACCTAAGAAGTGGCCCACCTAAGAAGAGCGCCCTTCTCTGGCACTCTTCTTATTAGTTGTTTCATTGGTCATAATTCTTCATTTGACTGACAACCATTCTCAGTCTGTCCTAGTCTCTCCCCAACCTTCTCTACATATCCCCCATCTATTCTTGTACACTTTTAGTACCTGAATAAATCTGTATTCTATAACTACTATTCGTGTTCCTTGAACCGGCCAGAATGCCGGATCCTAAGGACTCAACACTACCTACATTTTTTCCAGATCTTATTCTTACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38281</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>495452</contig_pos>
        <strand></strand>
        <context>gagcgccctt[C/T]tctggcactc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTTATTTGTGATCCACCTAAGAAGTGGCCCACCTAAGAAGAGCGCCCTT</left_flank>
        <right_flank>TCTGGCACTCTTCTTATTAGTTGTTTCATTGGTCATAATTCTTCATTTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATCCCAGCTACTTCTTTGTATTTCGTTTTTTCCTCTCTTATTCTCCTCCAAAATCATATTTGTCGACGTGCCTTCCATACTTGAGAAAGCCTTCTTCCAAGCAACTGGCTCGTCATATTTTTTTTCTCCTCCGCTCTCAACACATCTTCAATCTTCATATATTCCGTTTTTCAAAACGTCTCTAGGGAGCGTCGCTCATCGGTCTCCCAACCAACCAATTTCCAGTTTTGTTCGGGAGCTCACGCCCCCCCCCCCGAAACTTCTTCTATTTCTTTCTTCGTCTCCTTAACTTTCTGCCCTAAACTCTTCTTCCTCTTTTTTCCATTCCCATATTCAATTTGCGGGACCGCCGCACTTTTGGTCAGTCCACTTTATCCTAAAGAGTCTCTTTTTACTACCTGTTGCATTCTATGCATACTTTCATTTGTTTTATATTTGATCTACCAAGTTATTTGTGATCCACCTAAGAAGTGGCCCACCTAAGAAGAGCGCCCTTCTCTGGCACTCTTCTTATTAGTTGTTTCATTGGTCATAATTCTTCATTTGACTGACAACCATTCTCAGTCTGTCCTAGTCTCTCCCCAACCTTCTCTACATATCCCCCATCTATTCTTGTACACTTTTAGTACCTGAATAAATCTGTATTCTATAACTACTATTCGTGTTCCTTGAACCGGCCAGAATGCCGGATCCTAAGGACTCAACACTACCTACATTTTTTCCAGATCTTATTCTTACATTTAGTATGACATCTTGCTTTTGCCGCATGAGTTATTCATTTATTCTTTCATTTCCTTTCTTTCATCTTTTGCCCTATTGTTCAGTTTCCCTTCATCCCCTCATTTTTCATCATCACTCAATTATTTTTCATTTCTTGTGCTCATTTTTGCTCTTTCTTCCGCTTTTCTCCTTCCTTTGCAATCCACGTCATTCATTTATTTCAGCGAACCTCTCCTCTTCATCTATTTTTCCAACAACTACCCATTTATTACGATAG</canonical>
            <polymorphic>TTTATCCCAGCTACTTCTTTGTATTTCGTTTTTTCCTCTCTTATTCTCCTCCAAAATCATATTTGTCGACGTGCCTTCCATACTTGAGAAAGCCTTCTTCCAAGCAACTGGCTCGTCATATTTTTTTTCTCCTCCGCTCTCAACACATCTTCAATCTTCATATATTCCGTTTTTCAAAACGTCTCTAGGGAGCGTCGCTCATCGGTCTCCCAACCAACCAATTTCCAGTTTTGTTCGGGAGCTCACGCCCCCCCCCCCGAAACTTCTTCTATTTCTTTCTTCGTCTCCTTAACTTTCTGCCCTAAACTCTTCTTCCTCTTTTTTCCATTCCCATATTCAATTTGCGGGACCGCCGCACTTTTGGTCAGTCCACTTTATCCTAAAGAGTCTCTTTTTACTACCTGTTGCATTCTATGCATACTTTCATTTGTTTTATATTTGATCTACCAAGTTATTTGTGATCCACCTAAGAAGTGGCCCACCTAAGAAGAGCGCCCTTYTCTGGCACTCTTCTTATTAGTTGTTTCATTGGTCATAATTCTTCATTTGACTGACAACCATTCTCAGTCTGTCCTAGTCTCTCCCCAACCTTCTCTACATATCCCCCATCTATTCTTGTACACTTTTAGTACCTGAATAAATCTGTATTCTATAACTACTATTCGTGTTCCTTGAACCGGCCAGAATGCCGGATCCTAAGGACTCAACACTACCTACATTTTTTCCAGATCTTATTCTTACATTTAGTATGACATCTTGCTTTTGCCGCATGAGTTATTCATTTATTCTTTCATTTCCTTTCTTTCATCTTTTGCCCTATTGTTCAGTTTCCCTTCATCCCCTCATTTTTCATCATCACTCAATTATTTTTCATTTCTTGTGCTCATTTTTGCTCTTTCTTCCGCTTTTCTCCTTCCTTTGCAATCCACGTCATTCATTTATTTCAGCGAACCTCTCCTCTTCATCTATTTTTCCAACAACTACCCATTTATTACGATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTCCACTTTATCCTAAAGAGTC</pcr_primer_p1>
		<pcr_primer_p2>AATGTAAGAATAAGATCTGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>379</pcr_amplicon_size>
		<canonical_amplicon>CAGTCCACTTTATCCTAAAGAGTCTCTTTTTACTACCTGTTGCATTCTATGCATACTTTCATTTGTTTTATATTTGATCTACCAAGTTATTTGTGATCCACCTAAGAAGTGGCCCACCTAAGAAGAGCGCCCTTCTCTGGCACTCTTCTTATTAGTTGTTTCATTGGTCATAATTCTTCATTTGACTGACAACCATTCTCAGTCTGTCCTAGTCTCTCCCCAACCTTCTCTACATATCCCCCATCTATTCTTGTACACTTTTAGTACCTGAATAAATCTGTATTCTATAACTACTATTCGTGTTCCTTGAACCGGCCAGAATGCCGGATCCTAAGGACTCAACACTACCTACATTTTTTCCAGATCTTATTCTTACATT</canonical_amplicon>
		<polymorphic_amplicon>CAGTCCACTTTATCCTAAAGAGTCTCTTTTTACTACCTGTTGCATTCTATGCATACTTTCATTTGTTTTATATTTGATCTACCAAGTTATTTGTGATCCACCTAAGAAGTGGCCCACCTAAGAAGAGCGCCCTTYTCTGGCACTCTTCTTATTAGTTGTTTCATTGGTCATAATTCTTCATTTGACTGACAACCATTCTCAGTCTGTCCTAGTCTCTCCCCAACCTTCTCTACATATCCCCCATCTATTCTTGTACACTTTTAGTACCTGAATAAATCTGTATTCTATAACTACTATTCGTGTTCCTTGAACCGGCCAGAATGCCGGATCCTAAGGACTCAACACTACCTACATTTTTTCCAGATCTTATTCTTACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38282</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>495491</contig_pos>
        <strand></strand>
        <context>ttggtcataa[T/C]tcytcatttg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGAGCGCCCTTCTCTGGCACTCTTCTTATTAGTTGTTTCATTGGTCATAA</left_flank>
        <right_flank>TCTTCATTTGACTGACAACCATTCTCAGTCTGTCCTAGTCTCTCCCCAAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTATTCTCCTCCAAAATCATATTTGTCGACGTGCCTTCCATACTTGAGAAAGCCTTCTTCCAAGCAACTGGCTCGTCATATTTTTTTTCTCCTCCGCTCTCAACACATCTTCAATCTTCATATATTCCGTTTTTCAAAACGTCTCTAGGGAGCGTCGCTCATCGGTCTCCCAACCAACCAATTTCCAGTTTTGTTCGGGAGCTCACGCCCCCCCCCCCGAAACTTCTTCTATTTCTTTCTTCGTCTCCTTAACTTTCTGCCCTAAACTCTTCTTCCTCTTTTTTCCATTCCCATATTCAATTTGCGGGACCGCCGCACTTTTGGTCAGTCCACTTTATCCTAAAGAGTCTCTTTTTACTACCTGTTGCATTCTATGCATACTTTCATTTGTTTTATATTTGATCTACCAAGTTATTTGTGATCCACCTAAGAAGTGGCCCACCTAAGAAGAGCGCCCTTCTCTGGCACTCTTCTTATTAGTTGTTTCATTGGTCATAATTCTTCATTTGACTGACAACCATTCTCAGTCTGTCCTAGTCTCTCCCCAACCTTCTCTACATATCCCCCATCTATTCTTGTACACTTTTAGTACCTGAATAAATCTGTATTCTATAACTACTATTCGTGTTCCTTGAACCGGCCAGAATGCCGGATCCTAAGGACTCAACACTACCTACATTTTTTCCAGATCTTATTCTTACATTTAGTATGACATCTTGCTTTTGCCGCATGAGTTATTCATTTATTCTTTCATTTCCTTTCTTTCATCTTTTGCCCTATTGTTCAGTTTCCCTTCATCCCCTCATTTTTCATCATCACTCAATTATTTTTCATTTCTTGTGCTCATTTTTGCTCTTTCTTCCGCTTTTCTCCTTCCTTTGCAATCCACGTCATTCATTTATTTCAGCGAACCTCTCCTCTTCATCTATTTTTCCAACAACTACCCATTTATTACGATAGCAAAAGATTGTCCAGATTCTCGGACAATTATATCGTGGT</canonical>
            <polymorphic>CTTATTCTCCTCCAAAATCATATTTGTCGACGTGCCTTCCATACTTGAGAAAGCCTTCTTCCAAGCAACTGGCTCGTCATATTTTTTTTCTCCTCCGCTCTCAACACATCTTCAATCTTCATATATTCCGTTTTTCAAAACGTCTCTAGGGAGCGTCGCTCATCGGTCTCCCAACCAACCAATTTCCAGTTTTGTTCGGGAGCTCACGCCCCCCCCCCCGAAACTTCTTCTATTTCTTTCTTCGTCTCCTTAACTTTCTGCCCTAAACTCTTCTTCCTCTTTTTTCCATTCCCATATTCAATTTGCGGGACCGCCGCACTTTTGGTCAGTCCACTTTATCCTAAAGAGTCTCTTTTTACTACCTGTTGCATTCTATGCATACTTTCATTTGTTTTATATTTGATCTACCAAGTTATTTGTGATCCACCTAAGAAGTGGCCCACCTAAGAAGAGCGCCCTTCTCTGGCACTCTTCTTATTAGTTGTTTCATTGGTCATAAYTCTTCATTTGACTGACAACCATTCTCAGTCTGTCCTAGTCTCTCCCCAACCTTCTCTACATATCCCCCATCTATTCTTGTACACTTTTAGTACCTGAATAAATCTGTATTCTATAACTACTATTCGTGTTCCTTGAACCGGCCAGAATGCCGGATCCTAAGGACTCAACACTACCTACATTTTTTCCAGATCTTATTCTTACATTTAGTATGACATCTTGCTTTTGCCGCATGAGTTATTCATTTATTCTTTCATTTCCTTTCTTTCATCTTTTGCCCTATTGTTCAGTTTCCCTTCATCCCCTCATTTTTCATCATCACTCAATTATTTTTCATTTCTTGTGCTCATTTTTGCTCTTTCTTCCGCTTTTCTCCTTCCTTTGCAATCCACGTCATTCATTTATTTCAGCGAACCTCTCCTCTTCATCTATTTTTCCAACAACTACCCATTTATTACGATAGCAAAAGATTGTCCAGATTCTCGGACAATTATATCGTGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>325 198 180 164 119 14</canonical_bands>
                <polymorphic_bands>523 180 164 119 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTCCACTTTATCCTAAAGAGTC</pcr_primer_p1>
		<pcr_primer_p2>AATGTAAGAATAAGATCTGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>379</pcr_amplicon_size>
		<canonical_amplicon>CAGTCCACTTTATCCTAAAGAGTCTCTTTTTACTACCTGTTGCATTCTATGCATACTTTCATTTGTTTTATATTTGATCTACCAAGTTATTTGTGATCCACCTAAGAAGTGGCCCACCTAAGAAGAGCGCCCTTCTCTGGCACTCTTCTTATTAGTTGTTTCATTGGTCATAATTCTTCATTTGACTGACAACCATTCTCAGTCTGTCCTAGTCTCTCCCCAACCTTCTCTACATATCCCCCATCTATTCTTGTACACTTTTAGTACCTGAATAAATCTGTATTCTATAACTACTATTCGTGTTCCTTGAACCGGCCAGAATGCCGGATCCTAAGGACTCAACACTACCTACATTTTTTCCAGATCTTATTCTTACATT</canonical_amplicon>
		<polymorphic_amplicon>CAGTCCACTTTATCCTAAAGAGTCTCTTTTTACTACCTGTTGCATTCTATGCATACTTTCATTTGTTTTATATTTGATCTACCAAGTTATTTGTGATCCACCTAAGAAGTGGCCCACCTAAGAAGAGCGCCCTTCTCTGGCACTCTTCTTATTAGTTGTTTCATTGGTCATAAYTCTTCATTTGACTGACAACCATTCTCAGTCTGTCCTAGTCTCTCCCCAACCTTCTCTACATATCCCCCATCTATTCTTGTACACTTTTAGTACCTGAATAAATCTGTATTCTATAACTACTATTCGTGTTCCTTGAACCGGCCAGAATGCCGGATCCTAAGGACTCAACACTACCTACATTTTTTCCAGATCTTATTCTTACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38283</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>495494</contig_pos>
        <strand></strand>
        <context>gtcataaytc[T/C]tcatttgact</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCGCCCTTCTCTGGCACTCTTCTTATTAGTTGTTTCATTGGTCATAATTC</left_flank>
        <right_flank>TCATTTGACTGACAACCATTCTCAGTCTGTCCTAGTCTCTCCCCAACCTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTCCTCCAAAATCATATTTGTCGACGTGCCTTCCATACTTGAGAAAGCCTTCTTCCAAGCAACTGGCTCGTCATATTTTTTTTCTCCTCCGCTCTCAACACATCTTCAATCTTCATATATTCCGTTTTTCAAAACGTCTCTAGGGAGCGTCGCTCATCGGTCTCCCAACCAACCAATTTCCAGTTTTGTTCGGGAGCTCACGCCCCCCCCCCCGAAACTTCTTCTATTTCTTTCTTCGTCTCCTTAACTTTCTGCCCTAAACTCTTCTTCCTCTTTTTTCCATTCCCATATTCAATTTGCGGGACCGCCGCACTTTTGGTCAGTCCACTTTATCCTAAAGAGTCTCTTTTTACTACCTGTTGCATTCTATGCATACTTTCATTTGTTTTATATTTGATCTACCAAGTTATTTGTGATCCACCTAAGAAGTGGCCCACCTAAGAAGAGCGCCCTTCTCTGGCACTCTTCTTATTAGTTGTTTCATTGGTCATAATTCTTCATTTGACTGACAACCATTCTCAGTCTGTCCTAGTCTCTCCCCAACCTTCTCTACATATCCCCCATCTATTCTTGTACACTTTTAGTACCTGAATAAATCTGTATTCTATAACTACTATTCGTGTTCCTTGAACCGGCCAGAATGCCGGATCCTAAGGACTCAACACTACCTACATTTTTTCCAGATCTTATTCTTACATTTAGTATGACATCTTGCTTTTGCCGCATGAGTTATTCATTTATTCTTTCATTTCCTTTCTTTCATCTTTTGCCCTATTGTTCAGTTTCCCTTCATCCCCTCATTTTTCATCATCACTCAATTATTTTTCATTTCTTGTGCTCATTTTTGCTCTTTCTTCCGCTTTTCTCCTTCCTTTGCAATCCACGTCATTCATTTATTTCAGCGAACCTCTCCTCTTCATCTATTTTTCCAACAACTACCCATTTATTACGATAGCAAAAGATTGTCCAGATTCTCGGACAATTATATCGTGGTATA</canonical>
            <polymorphic>ATTCTCCTCCAAAATCATATTTGTCGACGTGCCTTCCATACTTGAGAAAGCCTTCTTCCAAGCAACTGGCTCGTCATATTTTTTTTCTCCTCCGCTCTCAACACATCTTCAATCTTCATATATTCCGTTTTTCAAAACGTCTCTAGGGAGCGTCGCTCATCGGTCTCCCAACCAACCAATTTCCAGTTTTGTTCGGGAGCTCACGCCCCCCCCCCCGAAACTTCTTCTATTTCTTTCTTCGTCTCCTTAACTTTCTGCCCTAAACTCTTCTTCCTCTTTTTTCCATTCCCATATTCAATTTGCGGGACCGCCGCACTTTTGGTCAGTCCACTTTATCCTAAAGAGTCTCTTTTTACTACCTGTTGCATTCTATGCATACTTTCATTTGTTTTATATTTGATCTACCAAGTTATTTGTGATCCACCTAAGAAGTGGCCCACCTAAGAAGAGCGCCCTTCTCTGGCACTCTTCTTATTAGTTGTTTCATTGGTCATAATTCYTCATTTGACTGACAACCATTCTCAGTCTGTCCTAGTCTCTCCCCAACCTTCTCTACATATCCCCCATCTATTCTTGTACACTTTTAGTACCTGAATAAATCTGTATTCTATAACTACTATTCGTGTTCCTTGAACCGGCCAGAATGCCGGATCCTAAGGACTCAACACTACCTACATTTTTTCCAGATCTTATTCTTACATTTAGTATGACATCTTGCTTTTGCCGCATGAGTTATTCATTTATTCTTTCATTTCCTTTCTTTCATCTTTTGCCCTATTGTTCAGTTTCCCTTCATCCCCTCATTTTTCATCATCACTCAATTATTTTTCATTTCTTGTGCTCATTTTTGCTCTTTCTTCCGCTTTTCTCCTTCCTTTGCAATCCACGTCATTCATTTATTTCAGCGAACCTCTCCTCTTCATCTATTTTTCCAACAACTACCCATTTATTACGATAGCAAAAGATTGTCCAGATTCTCGGACAATTATATCGTGGTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTCCACTTTATCCTAAAGAGTC</pcr_primer_p1>
		<pcr_primer_p2>AATGTAAGAATAAGATCTGGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>379</pcr_amplicon_size>
		<canonical_amplicon>CAGTCCACTTTATCCTAAAGAGTCTCTTTTTACTACCTGTTGCATTCTATGCATACTTTCATTTGTTTTATATTTGATCTACCAAGTTATTTGTGATCCACCTAAGAAGTGGCCCACCTAAGAAGAGCGCCCTTCTCTGGCACTCTTCTTATTAGTTGTTTCATTGGTCATAATTCTTCATTTGACTGACAACCATTCTCAGTCTGTCCTAGTCTCTCCCCAACCTTCTCTACATATCCCCCATCTATTCTTGTACACTTTTAGTACCTGAATAAATCTGTATTCTATAACTACTATTCGTGTTCCTTGAACCGGCCAGAATGCCGGATCCTAAGGACTCAACACTACCTACATTTTTTCCAGATCTTATTCTTACATT</canonical_amplicon>
		<polymorphic_amplicon>CAGTCCACTTTATCCTAAAGAGTCTCTTTTTACTACCTGTTGCATTCTATGCATACTTTCATTTGTTTTATATTTGATCTACCAAGTTATTTGTGATCCACCTAAGAAGTGGCCCACCTAAGAAGAGCGCCCTTCTCTGGCACTCTTCTTATTAGTTGTTTCATTGGTCATAATTCYTCATTTGACTGACAACCATTCTCAGTCTGTCCTAGTCTCTCCCCAACCTTCTCTACATATCCCCCATCTATTCTTGTACACTTTTAGTACCTGAATAAATCTGTATTCTATAACTACTATTCGTGTTCCTTGAACCGGCCAGAATGCCGGATCCTAAGGACTCAACACTACCTACATTTTTTCCAGATCTTATTCTTACATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38284</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>497210</contig_pos>
        <strand>+</strand>
        <context>AGCAAAGGTA[G/T]TTTTTTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCACAACGAACTCGCTTATCAGCATGGTATTCATTTCGAAGCAAAGGTA</left_flank>
        <right_flank>TTTTTTTTTTTGGAACCTTAAAAAAAAACTTTTCTGTTCTTCGACTTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAATTTTTTTTGCTGTTCTCCTAATATTCTTCTTATTAACAAACCGTTTTTCTTGTTTAATGTCTACCGTAAACACTCTAACAGAATTACTCACCTAACTTTCAACTTAAAGCCATTTTATCTTGGTTTCTGTGAAAGATATCAACAAGTGGTCAACTGATAAAAGGTTTTGGAAACTATGATAGACATTTTGTTAGTGAGATATATGGACTCAAAGTGGACGGTTTTCTTTTTAAGTGTTCACGATGCGTCCATTACCTACTCAACCTTTCTTTGTTTCAAATTTTCCTAACTGGTTTTTTTTTGCGTGCTCCAATTCCTCTCCCCAAAAATTCTTCCTAAACTCATTTCTTAGTTTTTTGCAGAGGTGAGGATATAATGCCTGTGCGGAAAAAGCATGGTCCGTACGATATCATCGCTGACGATGTGTACGACTGCCGAATTCCACTTCACAACGAACTCGCTTATCAGCATGGTATTCATTTCGAAGCAAAGGTATTTTTTTTTTTTGGAACCTTAAAAAAAAACTTTTCTGTTCTTCGACTTTCTTCAACTCTTTTTCCCAACAAACCATCAGTGTTTTCGTCTAAACGGGCGGGTTTGCCTGGAGGGCCAGATTAGATTGTCGACGAGAGTCGCCTAAACTTGTTTGCCCGAGTTAAATCAGCATAAGAAAAAAAAACTTTTGGAAACTTGGAAATTTTGAATTTGACTGTCAGGTCGAAATATCGAAATTCTGATGAACTGGAGAACTCAAATCATAAAAGTACAATTTTCTCTTCAAAACTAAAAAGTCGAAAAACCGAAAAGTTGAGGAAATGCTCTCTGATGTTCTAAAAAGAAAGAAAATGTATTTTGCAGTATGTCGGAAGCATGGAAATTCCTAGACCCGGGACGAGAATCGAAATTGTGGCGGCAATGCGGAGAGTTCGGGTAAGAACATTTTGGGGATAAAAAATTGAAAAACTCTTGATATGGCAATTTCATAAAGTAGAAGCG</canonical>
            <polymorphic>TGAATTTTTTTTGCTGTTCTCCTAATATTCTTCTTATTAACAAACCGTTTTTCTTGTTTAATGTCTACCGTAAACACTCTAACAGAATTACTCACCTAACTTTCAACTTAAAGCCATTTTATCTTGGTTTCTGTGAAAGATATCAACAAGTGGTCAACTGATAAAAGGTTTTGGAAACTATGATAGACATTTTGTTAGTGAGATATATGGACTCAAAGTGGACGGTTTTCTTTTTAAGTGTTCACGATGCGTCCATTACCTACTCAACCTTTCTTTGTTTCAAATTTTCCTAACTGGTTTTTTTTTGCGTGCTCCAATTCCTCTCCCCAAAAATTCTTCCTAAACTCATTTCTTAGTTTTTTGCAGAGGTGAGGATATAATGCCTGTGCGGAAAAAGCATGGTCCGTACGATATCATCGCTGACGATGTGTACGACTGCCGAATTCCACTTCACAACGAACTCGCTTATCAGCATGGTATTCATTTCGAAGCAAAGGTAKTTTTTTTTTTTGGAACCTTAAAAAAAAACTTTTCTGTTCTTCGACTTTCTTCAACTCTTTTTCCCAACAAACCATCAGTGTTTTCGTCTAAACGGGCGGGTTTGCCTGGAGGGCCAGATTAGATTGTCGACGAGAGTCGCCTAAACTTGTTTGCCCGAGTTAAATCAGCATAAGAAAAAAAAACTTTTGGAAACTTGGAAATTTTGAATTTGACTGTCAGGTCGAAATATCGAAATTCTGATGAACTGGAGAACTCAAATCATAAAAGTACAATTTTCTCTTCAAAACTAAAAAGTCGAAAAACCGAAAAGTTGAGGAAATGCTCTCTGATGTTCTAAAAAGAAAGAAAATGTATTTTGCAGTATGTCGGAAGCATGGAAATTCCTAGACCCGGGACGAGAATCGAAATTGTGGCGGCAATGCGGAGAGTTCGGGTAAGAACATTTTGGGGATAAAAAATTGAAAAACTCTTGATATGGCAATTTCATAAAGTAGAAGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAAAAATTCTTCCTAAACTCA</pcr_primer_p1>
		<pcr_primer_p2>GGTTTGTTGGGAAAAAGAGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCAAAAATTCTTCCTAAACTCATTTCTTAGTTTTTTGCAGAGGTGAGGATATAATGCCTGTGCGGAAAAAGCATGGTCCGTACGATATCATCGCTGACGATGTGTACGACTGCCGAATTCCACTTCACAACGAACTCGCTTATCAGCATGGTATTCATTTCGAAGCAAAGGTATTTTTTTTTTTTGGAACCTTAAAAAAAAACTTTTCTGTTCTTCGACTTTCTTCAACTCTTTTTCCCAACAAACC</canonical_amplicon>
		<polymorphic_amplicon>CCAAAAATTCTTCCTAAACTCATTTCTTAGTTTTTTGCAGAGGTGAGGATATAATGCCTGTGCGGAAAAAGCATGGTCCGTACGATATCATCGCTGACGATGTGTACGACTGCCGAATTCCACTTCACAACGAACTCGCTTATCAGCATGGTATTCATTTCGAAGCAAAGGTAKTTTTTTTTTTTGGAACCTTAAAAAAAAACTTTTCTGTTCTTCGACTTTCTTCAACTCTTTTTCCCAACAAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38285</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>588913</contig_pos>
        <strand>+</strand>
        <context>AATTGAACSA[C/G]TTCATCGCCC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAATACCCCGATTTTTCCATGTTCTGGTACAATTACCCCAAATTGAACCA</left_flank>
        <right_flank>TTCATCGCCCGTGTCTTTTTTTCGATAATTTTGCTTTTAAATATTATACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATAATGTGTAGAGCTCTCGAGTATGATGAGAAACCAAACTATGAAAAATTTAAACGGGTGTTCAAGTTGAACAGTGCACGTGCAGCCACTGTGAGCGTGTAAGCATTGAGAGGTCAGATTTTTTCGATAAAACAATTTTACAGTAAACCAGACTTGCCTAATCGAGTGTACCGCTGCAATCTCATAAGAGAGGAGGAGGAAATTTTGCTCAAGTTTGACGTCAACAAAGAAGTCACTGAGACATCTGAAATCGCGGAATTGATCGAGATGAACAACTCTCCTGATGCTGACGATTAGGATGCTGACTACTCGTCCGGATTTTAATTTTCTAATTTCTTCACCGGTCGATTTGAGTATTCTTTGCTTAACTTTGCCTTTCTATCAACATGTTTCTTTATTTTTTCCATTTTCTGTCCTTTTCTTTCCTTTTCTTCCCTTTTTTCTATTTAATACCCCGATTTTTCCATGTTCTGGTACAATTACCCCAAATTGAACCAGTTCATCGCCCGTGTCTTTTTTTCGATAATTTTGCTTTTAAATATTATACTTTCTTAAATTTGAAAAACATTTTTTTGAAAAATTTTTCAATTAGAAGATTATTTTTTGAGGGAATCGGGTTCATGTTGATTTCAAATCGGTGAGATTATGAGAATCAAATTTTTTTCAGCTAGTTTATTAGAGTTTCTATAGAATCACGTGGCTTTTTTTTGTTAGTAAGATTAAGTTTTCAATGGACACGCTTGCTTTCATTAAAAGGGGCGGTAGAAGATTATTTAAAACTTATCCGTATTCTAAGCTTTTGCTTCATATCACATGTGATATGCTTTTTTCCCGGTGATATAACTGAAAAATATTATTTCTGTTTGGATTTCATTTTTTCACAACTTCGTTTCCTCTAACCTAGTTTTGATTCAAAAAATTTTAGTGAAAGAATTGCCAAAAATCGTAATCATGATAATAAAATAACCTTCATAATTTAAGGCCATTCTACTATGTAG</canonical>
            <polymorphic>TCATAATGTGTAGAGCTCTCGAGTATGATGAGAAACCAAACTATGAAAAATTTAAACGGGTGTTCAAGTTGAACAGTGCACGTGCAGCCACTGTGAGCGTGTAAGCATTGAGAGGTCAGATTTTTTCGATAAAACAATTTTACAGTAAACCAGACTTGCCTAATCGAGTGTACCGCTGCAATCTCATAAGAGAGGAGGAGGAAATTTTGCTCAAGTTTGACGTCAACAAAGAAGTCACTGAGACATCTGAAATCGCGGAATTGATCGAGATGAACAACTCTCCTGATGCTGACGATTAGGATGCTGACTACTCGTCCGGATTTTAATTTTCTAATTTCTTCACCGGTCGATTTGAGTATTCTTTGCTTAACTTTGCCTTTCTATCAACATGTTTCTTTATTTTTTCCATTTTCTGTCCTTTTCTTTCCTTTTCTTCCCTTTTTTCTATTTAATACCCCGATTTTTCCATGTTCTGGTACAATTACCCCAAATTGAACCASTTCATCGCCCGTGTCTTTTTTTCGATAATTTTGCTTTTAAATATTATACTTTCTTAAATTTGAAAAACATTTTTTTGAAAAATTTTTCAATTAGAAGATTATTTTTTGAGGGAATCGGGTTCATGTTGATTTCAAATCGGTGAGATTATGAGAATCAAATTTTTTTCAGCTAGTTTATTAGAGTTTCTATAGAATCACGTGGCTTTTTTTTGTTAGTAAGATTAAGTTTTCAATGGACACGCTTGCTTTCATTAAAAGGGGCGGTAGAAGATTATTTAAAACTTATCCGTATTCTAAGCTTTTGCTTCATATCACATGTGATATGCTTTTTTCCCGGTGATATAACTGAAAAATATTATTTCTGTTTGGATTTCATTTTTTCACAACTTCGTTTCCTCTAACCTAGTTTTGATTCAAAAAATTTTAGTGAAAGAATTGCCAAAAATCGTAATCATGATAATAAAATAACCTTCATAATTTAAGGCCATTCTACTATGTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTATTTAATACCCCGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATTTGATTCTCATAATCTCACC</pcr_primer_p2>
		<pcr_amplicon_size>220</pcr_amplicon_size>
		<canonical_amplicon>TTCTATTTAATACCCCGATTTTTCCATGTTCTGGTACAATTACCCCAAATTGAACCAGTTCATCGCCCGTGTCTTTTTTTCGATAATTTTGCTTTTAAATATTATACTTTCTTAAATTTGAAAAACATTTTTTTGAAAAATTTTTCAATTAGAAGATTATTTTTTGAGGGAATCGGGTTCATGTTGATTTCAAATCGGTGAGATTATGAGAATCAAATTT</canonical_amplicon>
		<polymorphic_amplicon>TTCTATTTAATACCCCGATTTTTCCATGTTCTGGTACAATTACCCCAAATTGAACCASTTCATCGCCCGTGTCTTTTTTTCGATAATTTTGCTTTTAAATATTATACTTTCTTAAATTTGAAAAACATTTTTTTGAAAAATTTTTCAATTAGAAGATTATTTTTTGAGGGAATCGGGTTCATGTTGATTTCAAATCGGTGAGATTATGAGAATCAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38286</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>590203</contig_pos>
        <strand>+</strand>
        <context>ATCCAAAGAA[C/T]TAGTTCACAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCGTTCTCTTTATCTTCTTCCCTCTTTTTGTATATTTGATCCAAAGAA</left_flank>
        <right_flank>TAGTTCACAAACTTTAGATGCTTCCAGCTCCTTTAGAAACCACAGATAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTATCTTGAATATTTACAGACCAGACTAATCATGTCTTCTAACCATGTGCCTCTAGAACCATTTGACATAACTCGTATGATTGAGTGAGTTGCTCAGTACACAACAACAATTTTCAGAGCGATACGAAGTACAACCGAAAACGAACCAACATTGGAAGGAGAGGAATTGGAGAGAGCTCGACGAATCGACGATCGCGTGGTAGATTATACAAGGAGAATCGTGGAAGGGGCGATGAGACACCTAGAGAATAGAATTCAAGCCATGGTCGAGGAGCTGGAAAAAGCGTTGAAGCGAGGAGTTCATCATGGTTACATCAAGAAACCAAGTTCCTGCAAACTGGGATATGACTAATTAAAAATGAAAAAAAGAGCAATGTGATTTTTTAAAGAATTTAGAAATAATTAACAGGTGTTTTTTAATGCATGGAGGTTGTGAAATTTCATCAGTTTCGTTCTCTTTATCTTCTTCCCTCTTTTTGTATATTTGATCCAAAGAACTAGTTCACAAACTTTAGATGCTTCCAGCTCCTTTAGAAACCACAGATAAGGTTATAACACCAATACGGACGACCGGATGACTCTTCGCTTTTGTTCTAACCCAAAATAGATTCTTTTCCCCATTCCTTTCTTTTTGAAGGTTTCGTACAATTTAGGCAGATCTCTATCTAAATAATTTTCAATTTCGAAGATTGTAGCTCTGCAAATCCCATCCACATTTAAATTGTATTCTATACATCCATTTTCATGTTCCTCTTTTTCTTTTCCATATTTTCGTCAATCGCACCAGTGTTTTTTTTGTTCATTTCCGACTCCCCGCTTTCCCCCTTTTTTGTTTTGTGCGTGAATGTGTGTTATTAACAATTTTCTCAAAAAAACCTATTCTAATATCCATTACTTTTGTCTGATTATCTGTCTTGGCTAACTTTTGGTGTTATAACCTTATCACAACAATTTTTCCTTTTTTTTTCCAATTATCATCAGTTTCCACAACTAGTGAC</canonical>
            <polymorphic>ATTTATCTTGAATATTTACAGACCAGACTAATCATGTCTTCTAACCATGTGCCTCTAGAACCATTTGACATAACTCGTATGATTGAGTGAGTTGCTCAGTACACAACAACAATTTTCAGAGCGATACGAAGTACAACCGAAAACGAACCAACATTGGAAGGAGAGGAATTGGAGAGAGCTCGACGAATCGACGATCGCGTGGTAGATTATACAAGGAGAATCGTGGAAGGGGCGATGAGACACCTAGAGAATAGAATTCAAGCCATGGTCGAGGAGCTGGAAAAAGCGTTGAAGCGAGGAGTTCATCATGGTTACATCAAGAAACCAAGTTCCTGCAAACTGGGATATGACTAATTAAAAATGAAAAAAAGAGCAATGTGATTTTTTAAAGAATTTAGAAATAATTAACAGGTGTTTTTTAATGCATGGAGGTTGTGAAATTTCATCAGTTTCGTTCTCTTTATCTTCTTCCCTCTTTTTGTATATTTGATCCAAAGAAYTAGTTCACAAACTTTAGATGCTTCCAGCTCCTTTAGAAACCACAGATAAGGTTATAACACCAATACGGACGACCGGATGACTCTTCGCTTTTGTTCTAACCCAAAATAGATTCTTTTCCCCATTCCTTTCTTTTTGAAGGTTTCGTACAATTTAGGCAGATCTCTATCTAAATAATTTTCAATTTCGAAGATTGTAGCTCTGCAAATCCCATCCACATTTAAATTGTATTCTATACATCCATTTTCATGTTCCTCTTTTTCTTTTCCATATTTTCGTCAATCGCACCAGTGTTTTTTTTGTTCATTTCCGACTCCCCGCTTTCCCCCTTTTTTGTTTTGTGCGTGAATGTGTGTTATTAACAATTTTCTCAAAAAAACCTATTCTAATATCCATTACTTTTGTCTGATTATCTGTCTTGGCTAACTTTTGGTGTTATAACCTTATCACAACAATTTTTCCTTTTTTTTTCCAATTATCATCAGTTTCCACAACTAGTGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACTAGT</site>
                <isoschizomers>
                    <enzyme>AhlI</enzyme>
                    <enzyme>BcuI</enzyme>
                    <enzyme>SpeI</enzyme>
                </isoschizomers>
                <canonical_bands>499 493 8</canonical_bands>
                <polymorphic_bands>992 8</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>493 256 189 55 7</canonical_bands>
                <polymorphic_bands>749 189 55 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATCAGTTTCGTTCTCTTTATC</pcr_primer_p1>
		<pcr_primer_p2>ATCTTCGAAATTGAAAATTATTTAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCATCAGTTTCGTTCTCTTTATCTTCTTCCCTCTTTTTGTATATTTGATCCAAAGAACTAGTTCACAAACTTTAGATGCTTCCAGCTCCTTTAGAAACCACAGATAAGGTTATAACACCAATACGGACGACCGGATGACTCTTCGCTTTTGTTCTAACCCAAAATAGATTCTTTTCCCCATTCCTTTCTTTTTGAAGGTTTCGTACAATTTAGGCAGATCTCTATCTAAATAATTTTCAATTTCGAAGAT</canonical_amplicon>
		<polymorphic_amplicon>TCATCAGTTTCGTTCTCTTTATCTTCTTCCCTCTTTTTGTATATTTGATCCAAAGAAYTAGTTCACAAACTTTAGATGCTTCCAGCTCCTTTAGAAACCACAGATAAGGTTATAACACCAATACGGACGACCGGATGACTCTTCGCTTTTGTTCTAACCCAAAATAGATTCTTTTCCCCATTCCTTTCTTTTTGAAGGTTTCGTACAATTTAGGCAGATCTCTATCTAAATAATTTTCAATTTCGAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38287</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>600318</contig_pos>
        <strand>+</strand>
        <context>TTGGAATAGA[A/C]TTTTTTTCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAGTTTCTTTTCTTTTTTAATTAAAAAAGGTCGGACCAACTTGGAATAGA</left_flank>
        <right_flank>TTTTTTTCCTCAGAACAGGATCCAATCTCGAAAATCGTCAAAAATATTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTTTGCACCAACATAGCTCAGCTGCTATCGTCGCGCCATTTCGATCGGTGGGTCCACAAGTTCAAATCCTCAAAACACAAAAGAAACATTCAACATCGTTGACAAGAGATGTTTGTCCTCAATCCCACATAAAGAGGATCTGAAAATTTATAAAGAATATTTTCTTATCGAACAGCACTTATTGACGCCTCCAATCCGTTCATCCGCAAAAGTGCATATTAGTTTCGAAAAATTACAAAAACAACCAAGAGTAGTGAGATCACGCCTACAAAAGCGAATGCTTTCGAGCAGAATGACCGGAAAGTGCAATCCAGATTAAACGTGCACTTTTGAGTGAGATGGCTATGACGACACACATCGGAAATAAATTAAGGCACGAAACCCTTTAGTTCTATTTTTGAGAAAGCAATTAAAAAAGAAGAAAGGAATGCGGAATAGTGCTTTCAGAGTTTCTTTTCTTTTTTAATTAAAAAAGGTCGGACCAACTTGGAATAGATTTTTTTTCCTCAGAACAGGATCCAATCTCGAAAATCGTCAAAAATATTGCAAAAAATAGCAAAACGGTCATCAATTATAAAAATTTCAAGCCAAATGAAAGACATAAATGGGTGTTCAAAACTGTTTAATGTGTTCTTACAAAACAAACAATGCATGCTGAATATTACATAATAAATACATTCCTGCTAACTTGGGAAATGTTGTTATTCTAAATTGTCTTCTGTTTACAGTTTTTTGCAGACATCTACAAACTGATGATTATTATTTTCCACTTTCACTGTTATGTAAAAACCATTCCTCATTTTTAAACTGTTATGTAAAAACCATTCCTCATTTTTAAACTGTTATGTAAAAACCATTCCTCATTTTTAAATGTTTTGTTTGAATAAAAAGTTTTTGACAATTCTCTAGTTTTTAAAGCTTCATACAATCAACGAAAATGTGATATAAACAGACAGTTCCGGTTATTACAACACATAACATTGTAGTTTTCAGTTGA</canonical>
            <polymorphic>TTGTTTTGCACCAACATAGCTCAGCTGCTATCGTCGCGCCATTTCGATCGGTGGGTCCACAAGTTCAAATCCTCAAAACACAAAAGAAACATTCAACATCGTTGACAAGAGATGTTTGTCCTCAATCCCACATAAAGAGGATCTGAAAATTTATAAAGAATATTTTCTTATCGAACAGCACTTATTGACGCCTCCAATCCGTTCATCCGCAAAAGTGCATATTAGTTTCGAAAAATTACAAAAACAACCAAGAGTAGTGAGATCACGCCTACAAAAGCGAATGCTTTCGAGCAGAATGACCGGAAAGTGCAATCCAGATTAAACGTGCACTTTTGAGTGAGATGGCTATGACGACACACATCGGAAATAAATTAAGGCACGAAACCCTTTAGTTCTATTTTTGAGAAAGCAATTAAAAAAGAAGAAAGGAATGCGGAATAGTGCTTTCAGAGTTTCTTTTCTTTTTTAATTAAAAAAGGTCGGACCAACTTGGAATAGAMTTTTTTTCCTCAGAACAGGATCCAATCTCGAAAATCGTCAAAAATATTGCAAAAAATAGCAAAACGGTCATCAATTATAAAAATTTCAAGCCAAATGAAAGACATAAATGGGTGTTCAAAACTGTTTAATGTGTTCTTACAAAACAAACAATGCATGCTGAATATTACATAATAAATACATTCCTGCTAACTTGGGAAATGTTGTTATTCTAAATTGTCTTCTGTTTACAGTTTTTTGCAGACATCTACAAACTGATGATTATTATTTTCCACTTTCACTGTTATGTAAAAACCATTCCTCATTTTTAAACTGTTATGTAAAAACCATTCCTCATTTTTAAACTGTTATGTAAAAACCATTCCTCATTTTTAAATGTTTTGTTTGAATAAAAAGTTTTTGACAATTCTCTAGTTTTTAAAGCTTCATACAATCAACGAAAATGTGATATAAACAGACAGTTCCGGTTATTACAACACATAACATTGTAGTTTTCAGTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAAACCCTTTAGTTCTATTTTT</pcr_primer_p1>
		<pcr_primer_p2>ACAGTTTTGAACACCCATTTAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CGAAACCCTTTAGTTCTATTTTTGAGAAAGCAATTAAAAAAGAAGAAAGGAATGCGGAATAGTGCTTTCAGAGTTTCTTTTCTTTTTTAATTAAAAAAGGTCGGACCAACTTGGAATAGATTTTTTTTCCTCAGAACAGGATCCAATCTCGAAAATCGTCAAAAATATTGCAAAAAATAGCAAAACGGTCATCAATTATAAAAATTTCAAGCCAAATGAAAGACATAAATGGGTGTTCAAAACTGT</canonical_amplicon>
		<polymorphic_amplicon>CGAAACCCTTTAGTTCTATTTTTGAGAAAGCAATTAAAAAAGAAGAAAGGAATGCGGAATAGTGCTTTCAGAGTTTCTTTTCTTTTTTAATTAAAAAAGGTCGGACCAACTTGGAATAGAMTTTTTTTCCTCAGAACAGGATCCAATCTCGAAAATCGTCAAAAATATTGCAAAAAATAGCAAAACGGTCATCAATTATAAAAATTTCAAGCCAAATGAAAGACATAAATGGGTGTTCAAAACTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38288</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>602805</contig_pos>
        <strand>+</strand>
        <context>TTCGCCCCCA[C/G]TTTTTTTTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACATTGAATTAGTTCCTCTCATTGAAAACAATTCCACTAGTTCGCCCCCA</left_flank>
        <right_flank>TTTTTTTTCCGGAACCAAACGGATATGACATTTAGGATAAACGTTTAGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACTTCTAAACCACAATATACCCCCGTATCGTTGTGCTTTCCAAATTATGGGTTCTTTTCTTATCATAAAAAATCAGAAATTCTGAAATCTTCTGAAAATCTTCTGGTGACTTCTTAGGACAGTTCAGTGAGCAACAACGTCAACAGTGCTCATATGTGTAGCGCATGATCTCACGCAACGTCACGGAAGGAACCAATCCGATTGAAACCACAAAAAATTCTTTCCGCTCCTTTGAGCTGGCCTGGTTTTTTTTTGTATTTTTGAGAGCGTCTTAAAAATGCAATTTTAAAAATTTCGTCACTTTTTTGAAAATTGAAAAAAAATATAGAAATGGGATCTGAACTGATAAGTAGGAATGATAAGAGATTTTTTAGATTTTTTTGCCTTCCTAATTGTTTTTGAGTAAATTTACAACAAACAACAAGTTCATGTGTCCCACTTAGAACAACATTGAATTAGTTCCTCTCATTGAAAACAATTCCACTAGTTCGCCCCCATTTTTTTTTCCGGAACCAAACGGATATGACATTTAGGATAAACGTTTAGACCGGAAATTGAAGAGGCGCGTCGTCGAACGGAAATTGGAAGTTTTAGTCTAAAGTTTATGAGAAGTGTATTCTTTTTTTCGAGCTGTAGAATGTCAAAGTGAACTTTTATGGAAGCTTAGCTGATGATCACAAGCTTATCATGTAGTGTAGTTTTGATAGACAGTTCATATTTGGACTTGTCTAGGAAAAATGATGATTATATCTGTTTTTTCATCGTTTGTCTTTTATAATCGAGAAAAAAGTTGATAGCCAGTTTTTTCTTAACCAGGAACCTAGAATAGTCAACATTTTGTGTTACAGTAGACTTCTGTTCTTTTTACTCTTCTGATTTTTCCAACTCTTGTACCATGTACCTTTAGTCTTTCCAACCATGAACTAATCTATGACGAGAACATCTTATGTTTTTTTACTCTCACGTCACGAAACTTTTTTCTCTCTCAGCTCCTCCCC</canonical>
            <polymorphic>ACACTTCTAAACCACAATATACCCCCGTATCGTTGTGCTTTCCAAATTATGGGTTCTTTTCTTATCATAAAAAATCAGAAATTCTGAAATCTTCTGAAAATCTTCTGGTGACTTCTTAGGACAGTTCAGTGAGCAACAACGTCAACAGTGCTCATATGTGTAGCGCATGATCTCACGCAACGTCACGGAAGGAACCAATCCGATTGAAACCACAAAAAATTCTTTCCGCTCCTTTGAGCTGGCCTGGTTTTTTTTTGTATTTTTGAGAGCGTCTTAAAAATGCAATTTTAAAAATTTCGTCACTTTTTTGAAAATTGAAAAAAAATATAGAAATGGGATCTGAACTGATAAGTAGGAATGATAAGAGATTTTTTAGATTTTTTTGCCTTCCTAATTGTTTTTGAGTAAATTTACAACAAACAACAAGTTCATGTGTCCCACTTAGAACAACATTGAATTAGTTCCTCTCATTGAAAACAATTCCACTAGTTCGCCCCCASTTTTTTTTCCGGAACCAAACGGATATGACATTTAGGATAAACGTTTAGACCGGAAATTGAAGAGGCGCGTCGTCGAACGGAAATTGGAAGTTTTAGTCTAAAGTTTATGAGAAGTGTATTCTTTTTTTCGAGCTGTAGAATGTCAAAGTGAACTTTTATGGAAGCTTAGCTGATGATCACAAGCTTATCATGTAGTGTAGTTTTGATAGACAGTTCATATTTGGACTTGTCTAGGAAAAATGATGATTATATCTGTTTTTTCATCGTTTGTCTTTTATAATCGAGAAAAAAGTTGATAGCCAGTTTTTTCTTAACCAGGAACCTAGAATAGTCAACATTTTGTGTTACAGTAGACTTCTGTTCTTTTTACTCTTCTGATTTTTCCAACTCTTGTACCATGTACCTTTAGTCTTTCCAACCATGAACTAATCTATGACGAGAACATCTTATGTTTTTTTACTCTCACGTCACGAAACTTTTTTCTCTCTCAGCTCCTCCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTACAACAAACAACAAGTTCA</pcr_primer_p1>
		<pcr_primer_p2>AGTTCACTTTGACATTCTACAGC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATTTACAACAAACAACAAGTTCATGTGTCCCACTTAGAACAACATTGAATTAGTTCCTCTCATTGAAAACAATTCCACTAGTTCGCCCCCATTTTTTTTTCCGGAACCAAACGGATATGACATTTAGGATAAACGTTTAGACCGGAAATTGAAGAGGCGCGTCGTCGAACGGAAATTGGAAGTTTTAGTCTAAAGTTTATGAGAAGTGTATTCTTTTTTTCGAGCTGTAGAATGTCAAAGTGAACT</canonical_amplicon>
		<polymorphic_amplicon>AATTTACAACAAACAACAAGTTCATGTGTCCCACTTAGAACAACATTGAATTAGTTCCTCTCATTGAAAACAATTCCACTAGTTCGCCCCCASTTTTTTTTCCGGAACCAAACGGATATGACATTTAGGATAAACGTTTAGACCGGAAATTGAAGAGGCGCGTCGTCGAACGGAAATTGGAAGTTTTAGTCTAAAGTTTATGAGAAGTGTATTCTTTTTTTCGAGCTGTAGAATGTCAAAGTGAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38289</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>610386</contig_pos>
        <strand>+</strand>
        <context>CAAAGTTATT[C/T]TTCCATTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCGTTAAAAGTGAATGAATGTTTTTTCAGGGCATTTGTGCAAAGTTATT</left_flank>
        <right_flank>TTCCATTTGTATCGCAAATGTAATTTTTATTTACAAATTTCATGAGTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATTGAAATTACAGTTTTCTATCATTGTTTTTCAATTTTTTGTTTCATAAAATCTGAACTTTAATTTCGTTATTTCTTTTGTTCTGTTGTTTCCCATAGATTTTTATCGTCATTACACCTAAACTCCCGACCTATTTTTTGCTCTTGATGATTTTATCGGACAGGTAGTTGCACACGACATACAAGACTAGATTATCTAGAATTTTACTCACGGGAAAAATTTGACAATTTGAATGACATGTGTGCTGTATTTTCGATACCTTTCCTTTTCTCACTGACTGTTGGAGAGGTACAATGCTCTGTTTACTGTAGCACTATGGAGAAAAATAGTCAGTAACAGGGATGTGATTTTAAGTTCACGAATTTGACGAATTAAAAAAGATAATAAATTGTGGATGATTTGGTACTCGTAAAATTTTACGAGAGTCGTGAAATTTAATTGGTAAAAACCGTTAAAAGTGAATGAATGTTTTTTCAGGGCATTTGTGCAAAGTTATTTTTCCATTTGTATCGCAAATGTAATTTTTATTTACAAATTTCATGAGTTTGCAAAATGTGACGTTCTCTAAAATTCGTGATGTAAATTTGAGCGCACATCCCTGTATCAAGGAAAACTGATAAATAAATTTCTTATGTGGACAGTACGCATAGAATTAATTATGGGTGCTAATGTAATTCAGGTGTAATATCTATTTCGGACTGAACGTGTCATGAGACTGCATTTCAAAACACAAACAGTCCACTGAGCCTTTAAATCAATTTGTATACAAGATTAAAAATCCAAATTCTTTTTTCTACCTCGAGGCTCTCAGCCTGCAATATCCTTTTTTCCCATTTCTCTCTCTTTTCCTCTTTTTCGGCCCATCCCTTTTTTCACTTTTGCCTTTTTGTTTCATTTACGAAGTCAGACATCTCGTTACCTGCTTTGAAGGAGAACTTTTCTTATTTTTTCAATTCTCTTTCGAAATCTTTATTTCTTTTTAATATGTTATGAGGGAT</canonical>
            <polymorphic>CTATTGAAATTACAGTTTTCTATCATTGTTTTTCAATTTTTTGTTTCATAAAATCTGAACTTTAATTTCGTTATTTCTTTTGTTCTGTTGTTTCCCATAGATTTTTATCGTCATTACACCTAAACTCCCGACCTATTTTTTGCTCTTGATGATTTTATCGGACAGGTAGTTGCACACGACATACAAGACTAGATTATCTAGAATTTTACTCACGGGAAAAATTTGACAATTTGAATGACATGTGTGCTGTATTTTCGATACCTTTCCTTTTCTCACTGACTGTTGGAGAGGTACAATGCTCTGTTTACTGTAGCACTATGGAGAAAAATAGTCAGTAACAGGGATGTGATTTTAAGTTCACGAATTTGACGAATTAAAAAAGATAATAAATTGTGGATGATTTGGTACTCGTAAAATTTTACGAGAGTCGTGAAATTTAATTGGTAAAAACCGTTAAAAGTGAATGAATGTTTTTTCAGGGCATTTGTGCAAAGTTATTYTTCCATTTGTATCGCAAATGTAATTTTTATTTACAAATTTCATGAGTTTGCAAAATGTGACGTTCTCTAAAATTCGTGATGTAAATTTGAGCGCACATCCCTGTATCAAGGAAAACTGATAAATAAATTTCTTATGTGGACAGTACGCATAGAATTAATTATGGGTGCTAATGTAATTCAGGTGTAATATCTATTTCGGACTGAACGTGTCATGAGACTGCATTTCAAAACACAAACAGTCCACTGAGCCTTTAAATCAATTTGTATACAAGATTAAAAATCCAAATTCTTTTTTCTACCTCGAGGCTCTCAGCCTGCAATATCCTTTTTTCCCATTTCTCTCTCTTTTCCTCTTTTTCGGCCCATCCCTTTTTTCACTTTTGCCTTTTTGTTTCATTTACGAAGTCAGACATCTCGTTACCTGCTTTGAAGGAGAACTTTTCTTATTTTTTCAATTCTCTTTCGAAATCTTTATTTCTTTTTAATATGTTATGAGGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATAGTCAGTAACAGGGATGTG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTAGAGAACGTCACATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAATAGTCAGTAACAGGGATGTGATTTTAAGTTCACGAATTTGACGAATTAAAAAAGATAATAAATTGTGGATGATTTGGTACTCGTAAAATTTTACGAGAGTCGTGAAATTTAATTGGTAAAAACCGTTAAAAGTGAATGAATGTTTTTTCAGGGCATTTGTGCAAAGTTATTTTTCCATTTGTATCGCAAATGTAATTTTTATTTACAAATTTCATGAGTTTGCAAAATGTGACGTTCTCTAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAATAGTCAGTAACAGGGATGTGATTTTAAGTTCACGAATTTGACGAATTAAAAAAGATAATAAATTGTGGATGATTTGGTACTCGTAAAATTTTACGAGAGTCGTGAAATTTAATTGGTAAAAACCGTTAAAAGTGAATGAATGTTTTTTCAGGGCATTTGTGCAAAGTTATTYTTCCATTTGTATCGCAAATGTAATTTTTATTTACAAATTTCATGAGTTTGCAAAATGTGACGTTCTCTAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38290</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>615726</contig_pos>
        <strand></strand>
        <context>tctgggaaat[C/T]cataaagrag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCATGGACATCCTAACCGTCAACTTTAATTTATCTCGGTTTCTGGGAAAT</left_flank>
        <right_flank>CATAAAGAAGTAGCCAATTAACGAATCGTGTCTTATATTATAATCAAAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGATTCCAGATAGCATTTCTTTGGGAAATTGGTAGTAGATCCATTTAGGGAGTGTTCTTAAATTATTTGTTTAAAAAAAGTTATGGTTTGGATAATCTAGAACTTACTCTGTCACTGAGTGGCACTCAAAAATTCCAGACATTTCAAACAAGAATATTTTGAAAAGATTGAAGATCTTCAAATTTAGTCTTCTGTCTGCCGACCCGTACTTTTATACAGTTTTGCAAAACTATTTCAAAGCCAACAATACAGATCTCGCAGACATGTAAATTGTGGGAACACTGCAGAGTCTATGACCATTTCGAAAAAGATGATTTGGTTGACCTATAGTCTATATTGTGGAAAAACATGTGAAATAATCATGGTTATTTTTTTGGTTTTGAGTACCTCGATTCTAGAAGGCAACTCACAATGAGCAAGAAGTACAAATACCGTAGACACTCCAATAGCATGGACATCCTAACCGTCAACTTTAATTTATCTCGGTTTCTGGGAAATCCATAAAGAAGTAGCCAATTAACGAATCGTGTCTTATATTATAATCAAAATTTTGTCAGTTCATCACTTTTTAACATCTTCTACAGGAAACCATATAATTGGAAGATCACATGAGATTTCGAGAATTTCAAATGCTTTCCCAGCTCACAATTCACGGCATGGGAGCCGTGAATTGTGACTTAGTACAAGAAGCAGAGTGTTTTGCACTGAGTCTGCATACACGCAGGTCGCAGTTTTATTATTCCGACAATACTGTTTGTAGATGTGTTTTCAATTTGAAGAATCTTGAGTATAAATTTTTTGGTTTACCTGAAAAATCATGATTCGAATTAAAACCTCTTCGACAACCAGAAAAAATAATGCGGAATGAAAAATTTTTTTCTGATCAAAAAACTTTTTTTTTTCATTTTTCTGAATCAATAAAATTTTTATCATAAAATTTCTGCCAAATGAAAAGTTTGCGAAAAAACACGTGAGCCTCAGTGCTTTCCTTCTTGAATT</canonical>
            <polymorphic>AAGATTCCAGATAGCATTTCTTTGGGAAATTGGTAGTAGATCCATTTAGGGAGTGTTCTTAAATTATTTGTTTAAAAAAAGTTATGGTTTGGATAATCTAGAACTTACTCTGTCACTGAGTGGCACTCAAAAATTCCAGACATTTCAAACAAGAATATTTTGAAAAGATTGAAGATCTTCAAATTTAGTCTTCTGTCTGCCGACCCGTACTTTTATACAGTTTTGCAAAACTATTTCAAAGCCAACAATACAGATCTCGCAGACATGTAAATTGTGGGAACACTGCAGAGTCTATGACCATTTCGAAAAAGATGATTTGGTTGACCTATAGTCTATATTGTGGAAAAACATGTGAAATAATCATGGTTATTTTTTTGGTTTTGAGTACCTCGATTCTAGAAGGCAACTCACAATGAGCAAGAAGTACAAATACCGTAGACACTCCAATAGCATGGACATCCTAACCGTCAACTTTAATTTATCTCGGTTTCTGGGAAATYCATAAAGAAGTAGCCAATTAACGAATCGTGTCTTATATTATAATCAAAATTTTGTCAGTTCATCACTTTTTAACATCTTCTACAGGAAACCATATAATTGGAAGATCACATGAGATTTCGAGAATTTCAAATGCTTTCCCAGCTCACAATTCACGGCATGGGAGCCGTGAATTGTGACTTAGTACAAGAAGCAGAGTGTTTTGCACTGAGTCTGCATACACGCAGGTCGCAGTTTTATTATTCCGACAATACTGTTTGTAGATGTGTTTTCAATTTGAAGAATCTTGAGTATAAATTTTTTGGTTTACCTGAAAAATCATGATTCGAATTAAAACCTCTTCGACAACCAGAAAAAATAATGCGGAATGAAAAATTTTTTTCTGATCAAAAAACTTTTTTTTTTCATTTTTCTGAATCAATAAAATTTTTATCATAAAATTTCTGCCAAATGAAAAGTTTGCGAAAAAACACGTGAGCCTCAGTGCTTTCCTTCTTGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTCACAATGAGCAAGAAGTA</pcr_primer_p1>
		<pcr_primer_p2>AATTGAAAACACATCTACAAACAG</pcr_primer_p2>
		<pcr_amplicon_size>371</pcr_amplicon_size>
		<canonical_amplicon>AACTCACAATGAGCAAGAAGTACAAATACCGTAGACACTCCAATAGCATGGACATCCTAACCGTCAACTTTAATTTATCTCGGTTTCTGGGAAATCCATAAAGAAGTAGCCAATTAACGAATCGTGTCTTATATTATAATCAAAATTTTGTCAGTTCATCACTTTTTAACATCTTCTACAGGAAACCATATAATTGGAAGATCACATGAGATTTCGAGAATTTCAAATGCTTTCCCAGCTCACAATTCACGGCATGGGAGCCGTGAATTGTGACTTAGTACAAGAAGCAGAGTGTTTTGCACTGAGTCTGCATACACGCAGGTCGCAGTTTTATTATTCCGACAATACTGTTTGTAGATGTGTTTTCAATT</canonical_amplicon>
		<polymorphic_amplicon>AACTCACAATGAGCAAGAAGTACAAATACCGTAGACACTCCAATAGCATGGACATCCTAACCGTCAACTTTAATTTATCTCGGTTTCTGGGAAATYCATAAAGAAGTAGCCAATTAACGAATCGTGTCTTATATTATAATCAAAATTTTGTCAGTTCATCACTTTTTAACATCTTCTACAGGAAACCATATAATTGGAAGATCACATGAGATTTCGAGAATTTCAAATGCTTTCCCAGCTCACAATTCACGGCATGGGAGCCGTGAATTGTGACTTAGTACAAGAAGCAGAGTGTTTTGCACTGAGTCTGCATACACGCAGGTCGCAGTTTTATTATTCCGACAATACTGTTTGTAGATGTGTTTTCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38291</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>615734</contig_pos>
        <strand></strand>
        <context>atycataaag[A/G]agtagccaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCCTAACCGTCAACTTTAATTTATCTCGGTTTCTGGGAAATCCATAAAG</left_flank>
        <right_flank>AGTAGCCAATTAACGAATCGTGTCTTATATTATAATCAAAATTTTGTCAG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATAGCATTTCTTTGGGAAATTGGTAGTAGATCCATTTAGGGAGTGTTCTTAAATTATTTGTTTAAAAAAAGTTATGGTTTGGATAATCTAGAACTTACTCTGTCACTGAGTGGCACTCAAAAATTCCAGACATTTCAAACAAGAATATTTTGAAAAGATTGAAGATCTTCAAATTTAGTCTTCTGTCTGCCGACCCGTACTTTTATACAGTTTTGCAAAACTATTTCAAAGCCAACAATACAGATCTCGCAGACATGTAAATTGTGGGAACACTGCAGAGTCTATGACCATTTCGAAAAAGATGATTTGGTTGACCTATAGTCTATATTGTGGAAAAACATGTGAAATAATCATGGTTATTTTTTTGGTTTTGAGTACCTCGATTCTAGAAGGCAACTCACAATGAGCAAGAAGTACAAATACCGTAGACACTCCAATAGCATGGACATCCTAACCGTCAACTTTAATTTATCTCGGTTTCTGGGAAATCCATAAAGAAGTAGCCAATTAACGAATCGTGTCTTATATTATAATCAAAATTTTGTCAGTTCATCACTTTTTAACATCTTCTACAGGAAACCATATAATTGGAAGATCACATGAGATTTCGAGAATTTCAAATGCTTTCCCAGCTCACAATTCACGGCATGGGAGCCGTGAATTGTGACTTAGTACAAGAAGCAGAGTGTTTTGCACTGAGTCTGCATACACGCAGGTCGCAGTTTTATTATTCCGACAATACTGTTTGTAGATGTGTTTTCAATTTGAAGAATCTTGAGTATAAATTTTTTGGTTTACCTGAAAAATCATGATTCGAATTAAAACCTCTTCGACAACCAGAAAAAATAATGCGGAATGAAAAATTTTTTTCTGATCAAAAAACTTTTTTTTTTCATTTTTCTGAATCAATAAAATTTTTATCATAAAATTTCTGCCAAATGAAAAGTTTGCGAAAAAACACGTGAGCCTCAGTGCTTTCCTTCTTGAATTTCTGAAAT</canonical>
            <polymorphic>AGATAGCATTTCTTTGGGAAATTGGTAGTAGATCCATTTAGGGAGTGTTCTTAAATTATTTGTTTAAAAAAAGTTATGGTTTGGATAATCTAGAACTTACTCTGTCACTGAGTGGCACTCAAAAATTCCAGACATTTCAAACAAGAATATTTTGAAAAGATTGAAGATCTTCAAATTTAGTCTTCTGTCTGCCGACCCGTACTTTTATACAGTTTTGCAAAACTATTTCAAAGCCAACAATACAGATCTCGCAGACATGTAAATTGTGGGAACACTGCAGAGTCTATGACCATTTCGAAAAAGATGATTTGGTTGACCTATAGTCTATATTGTGGAAAAACATGTGAAATAATCATGGTTATTTTTTTGGTTTTGAGTACCTCGATTCTAGAAGGCAACTCACAATGAGCAAGAAGTACAAATACCGTAGACACTCCAATAGCATGGACATCCTAACCGTCAACTTTAATTTATCTCGGTTTCTGGGAAATCCATAAAGRAGTAGCCAATTAACGAATCGTGTCTTATATTATAATCAAAATTTTGTCAGTTCATCACTTTTTAACATCTTCTACAGGAAACCATATAATTGGAAGATCACATGAGATTTCGAGAATTTCAAATGCTTTCCCAGCTCACAATTCACGGCATGGGAGCCGTGAATTGTGACTTAGTACAAGAAGCAGAGTGTTTTGCACTGAGTCTGCATACACGCAGGTCGCAGTTTTATTATTCCGACAATACTGTTTGTAGATGTGTTTTCAATTTGAAGAATCTTGAGTATAAATTTTTTGGTTTACCTGAAAAATCATGATTCGAATTAAAACCTCTTCGACAACCAGAAAAAATAATGCGGAATGAAAAATTTTTTTCTGATCAAAAAACTTTTTTTTTTCATTTTTCTGAATCAATAAAATTTTTATCATAAAATTTCTGCCAAATGAAAAGTTTGCGAAAAAACACGTGAGCCTCAGTGCTTTCCTTCTTGAATTTCTGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACTCACAATGAGCAAGAAGTA</pcr_primer_p1>
		<pcr_primer_p2>AATTGAAAACACATCTACAAACAG</pcr_primer_p2>
		<pcr_amplicon_size>371</pcr_amplicon_size>
		<canonical_amplicon>AACTCACAATGAGCAAGAAGTACAAATACCGTAGACACTCCAATAGCATGGACATCCTAACCGTCAACTTTAATTTATCTCGGTTTCTGGGAAATCCATAAAGAAGTAGCCAATTAACGAATCGTGTCTTATATTATAATCAAAATTTTGTCAGTTCATCACTTTTTAACATCTTCTACAGGAAACCATATAATTGGAAGATCACATGAGATTTCGAGAATTTCAAATGCTTTCCCAGCTCACAATTCACGGCATGGGAGCCGTGAATTGTGACTTAGTACAAGAAGCAGAGTGTTTTGCACTGAGTCTGCATACACGCAGGTCGCAGTTTTATTATTCCGACAATACTGTTTGTAGATGTGTTTTCAATT</canonical_amplicon>
		<polymorphic_amplicon>AACTCACAATGAGCAAGAAGTACAAATACCGTAGACACTCCAATAGCATGGACATCCTAACCGTCAACTTTAATTTATCTCGGTTTCTGGGAAATCCATAAAGRAGTAGCCAATTAACGAATCGTGTCTTATATTATAATCAAAATTTTGTCAGTTCATCACTTTTTAACATCTTCTACAGGAAACCATATAATTGGAAGATCACATGAGATTTCGAGAATTTCAAATGCTTTCCCAGCTCACAATTCACGGCATGGGAGCCGTGAATTGTGACTTAGTACAAGAAGCAGAGTGTTTTGCACTGAGTCTGCATACACGCAGGTCGCAGTTTTATTATTCCGACAATACTGTTTGTAGATGTGTTTTCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38292</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>615753</contig_pos>
        <strand></strand>
        <context>attaacgaat[C/T]gtgtcttata</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTATCTCGGTTTCTGGGAAATCCATAAAGAAGTAGCCAATTAACGAAT</left_flank>
        <right_flank>GTGTCTTATATTATAATCAAAATTTTGTCAGTTCATCACTTTTTAACATC</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGGTAGTAGATCCATTTAGGGAGTGTTCTTAAATTATTTGTTTAAAAAAAGTTATGGTTTGGATAATCTAGAACTTACTCTGTCACTGAGTGGCACTCAAAAATTCCAGACATTTCAAACAAGAATATTTTGAAAAGATTGAAGATCTTCAAATTTAGTCTTCTGTCTGCCGACCCGTACTTTTATACAGTTTTGCAAAACTATTTCAAAGCCAACAATACAGATCTCGCAGACATGTAAATTGTGGGAACACTGCAGAGTCTATGACCATTTCGAAAAAGATGATTTGGTTGACCTATAGTCTATATTGTGGAAAAACATGTGAAATAATCATGGTTATTTTTTTGGTTTTGAGTACCTCGATTCTAGAAGGCAACTCACAATGAGCAAGAAGTACAAATACCGTAGACACTCCAATAGCATGGACATCCTAACCGTCAACTTTAATTTATCTCGGTTTCTGGGAAATCCATAAAGAAGTAGCCAATTAACGAATCGTGTCTTATATTATAATCAAAATTTTGTCAGTTCATCACTTTTTAACATCTTCTACAGGAAACCATATAATTGGAAGATCACATGAGATTTCGAGAATTTCAAATGCTTTCCCAGCTCACAATTCACGGCATGGGAGCCGTGAATTGTGACTTAGTACAAGAAGCAGAGTGTTTTGCACTGAGTCTGCATACACGCAGGTCGCAGTTTTATTATTCCGACAATACTGTTTGTAGATGTGTTTTCAATTTGAAGAATCTTGAGTATAAATTTTTTGGTTTACCTGAAAAATCATGATTCGAATTAAAACCTCTTCGACAACCAGAAAAAATAATGCGGAATGAAAAATTTTTTTCTGATCAAAAAACTTTTTTTTTTCATTTTTCTGAATCAATAAAATTTTTATCATAAAATTTCTGCCAAATGAAAAGTTTGCGAAAAAACACGTGAGCCTCAGTGCTTTCCTTCTTGAATTTCTGAAATAATAGATTTTTCTCACCGC</canonical>
            <polymorphic>AATTGGTAGTAGATCCATTTAGGGAGTGTTCTTAAATTATTTGTTTAAAAAAAGTTATGGTTTGGATAATCTAGAACTTACTCTGTCACTGAGTGGCACTCAAAAATTCCAGACATTTCAAACAAGAATATTTTGAAAAGATTGAAGATCTTCAAATTTAGTCTTCTGTCTGCCGACCCGTACTTTTATACAGTTTTGCAAAACTATTTCAAAGCCAACAATACAGATCTCGCAGACATGTAAATTGTGGGAACACTGCAGAGTCTATGACCATTTCGAAAAAGATGATTTGGTTGACCTATAGTCTATATTGTGGAAAAACATGTGAAATAATCATGGTTATTTTTTTGGTTTTGAGTACCTCGATTCTAGAAGGCAACTCACAATGAGCAAGAAGTACAAATACCGTAGACACTCCAATAGCATGGACATCCTAACCGTCAACTTTAATTTATCTCGGTTTCTGGGAAATCCATAAAGAAGTAGCCAATTAACGAATYGTGTCTTATATTATAATCAAAATTTTGTCAGTTCATCACTTTTTAACATCTTCTACAGGAAACCATATAATTGGAAGATCACATGAGATTTCGAGAATTTCAAATGCTTTCCCAGCTCACAATTCACGGCATGGGAGCCGTGAATTGTGACTTAGTACAAGAAGCAGAGTGTTTTGCACTGAGTCTGCATACACGCAGGTCGCAGTTTTATTATTCCGACAATACTGTTTGTAGATGTGTTTTCAATTTGAAGAATCTTGAGTATAAATTTTTTGGTTTACCTGAAAAATCATGATTCGAATTAAAACCTCTTCGACAACCAGAAAAAATAATGCGGAATGAAAAATTTTTTTCTGATCAAAAAACTTTTTTTTTTCATTTTTCTGAATCAATAAAATTTTTATCATAAAATTTCTGCCAAATGAAAAGTTTGCGAAAAAACACGTGAGCCTCAGTGCTTTCCTTCTTGAATTTCTGAAATAATAGATTTTTCTCACCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>261 185 131 114 104 92 72 41</canonical_bands>
                <polymorphic_bands>316 261 114 104 92 72 41</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>365 257 131 114 92 41</canonical_bands>
                <polymorphic_bands>388 365 114 92 41</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTCACAATGAGCAAGAAGTA</pcr_primer_p1>
		<pcr_primer_p2>AATTGAAAACACATCTACAAACAG</pcr_primer_p2>
		<pcr_amplicon_size>371</pcr_amplicon_size>
		<canonical_amplicon>AACTCACAATGAGCAAGAAGTACAAATACCGTAGACACTCCAATAGCATGGACATCCTAACCGTCAACTTTAATTTATCTCGGTTTCTGGGAAATCCATAAAGAAGTAGCCAATTAACGAATCGTGTCTTATATTATAATCAAAATTTTGTCAGTTCATCACTTTTTAACATCTTCTACAGGAAACCATATAATTGGAAGATCACATGAGATTTCGAGAATTTCAAATGCTTTCCCAGCTCACAATTCACGGCATGGGAGCCGTGAATTGTGACTTAGTACAAGAAGCAGAGTGTTTTGCACTGAGTCTGCATACACGCAGGTCGCAGTTTTATTATTCCGACAATACTGTTTGTAGATGTGTTTTCAATT</canonical_amplicon>
		<polymorphic_amplicon>AACTCACAATGAGCAAGAAGTACAAATACCGTAGACACTCCAATAGCATGGACATCCTAACCGTCAACTTTAATTTATCTCGGTTTCTGGGAAATCCATAAAGAAGTAGCCAATTAACGAATYGTGTCTTATATTATAATCAAAATTTTGTCAGTTCATCACTTTTTAACATCTTCTACAGGAAACCATATAATTGGAAGATCACATGAGATTTCGAGAATTTCAAATGCTTTCCCAGCTCACAATTCACGGCATGGGAGCCGTGAATTGTGACTTAGTACAAGAAGCAGAGTGTTTTGCACTGAGTCTGCATACACGCAGGTCGCAGTTTTATTATTCCGACAATACTGTTTGTAGATGTGTTTTCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38293</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>630822</contig_pos>
        <strand></strand>
        <context>cctcacaccg[T/A]aaactttgaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTCCGACATCGAACTACCCCAAAATCTGTAACAGAAAGGTCCTCACACCG</left_flank>
        <right_flank>AAACTTTGAATTCTTATATCTTGCTTCCTGTGCATTTTATCAAAAATGTG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAGCCCATTCTTTTCATTTTCTTCAAGCTCTAAAGAGATAAATCAAGCTTGACAAAAAAAATGGTTCGAGAAATATTCGTTGAAGGAGCTGGTAGAAAAAAAAGACGCGAGAGAATAATGTGAATAGAAATTTAGTAGCAGTAATTTTGGAACAGATTTTTTTGGGATAATTGCTACTAAGTTAATGAGAAATGTATCAAAAATATAGATTGATTTGTTTTATTAAAAACCCATAAATTGAAAAAGAAATAACACAAAAAAAGGTTTTCGCTATACAACTTCTCCATAGTTGCAAAATGAGAAAAAATGAAATGATTTATAACAAGTATTGGGTGGCTTCTCGTAGCAGTGAGTGGCTCTCTTTCCGTTTGTTTGCCATACTGAAGTTCGAAACATCGGAAATTCTTCTGATTTTACTTTGAAAAAAATTTATCCATTCTTGACTTAATTCCGACATCGAACTACCCCAAAATCTGTAACAGAAAGGTCCTCACACCGTAAACTTTGAATTCTTATATCTTGCTTCCTGTGCATTTTATCAAAAATGTGTCAACAGACAAAATACTCGTGATATTATAATCAACAATTTGTCAGTTCAGAATTCTTCAAGAGGATCCGAGATGAATTAGTACACAATTCTTTGTTTTTTTTACAGGAACAAAATTACAGGGTGCGGCAAAAGTTCTGTTACCAAGTTTACCTCAAGCTGGCGCGAGCTAACCTTCTTTTCGTGCACTGATTTTATTTCCATATTTTTCTCAGTCTCGTCATTAGTACAAAGTTTCATGTTTCTACCTCAATTTTTACGAAAATGGCAACACCCGTCAAAAAATCTTCGCCTTCTTTGATGTTTTTCCTGAATTTCTGGCACGCGCTTGACCACTGCTTTCATTGATGAGCCACTGTTCAGCTTAGAGGCAAAACTCAATTCTCAAAATTGTCAGGTTTGGCACAATTTCCTTAGCTATCTCACAGTGATGGTCTGTTGATTCTCTGGGC</canonical>
            <polymorphic>CTAGCCCATTCTTTTCATTTTCTTCAAGCTCTAAAGAGATAAATCAAGCTTGACAAAAAAAATGGTTCGAGAAATATTCGTTGAAGGAGCTGGTAGAAAAAAAAGACGCGAGAGAATAATGTGAATAGAAATTTAGTAGCAGTAATTTTGGAACAGATTTTTTTGGGATAATTGCTACTAAGTTAATGAGAAATGTATCAAAAATATAGATTGATTTGTTTTATTAAAAACCCATAAATTGAAAAAGAAATAACACAAAAAAAGGTTTTCGCTATACAACTTCTCCATAGTTGCAAAATGAGAAAAAATGAAATGATTTATAACAAGTATTGGGTGGCTTCTCGTAGCAGTGAGTGGCTCTCTTTCCGTTTGTTTGCCATACTGAAGTTCGAAACATCGGAAATTCTTCTGATTTTACTTTGAAAAAAATTTATCCATTCTTGACTTAATTCCGACATCGAACTACCCCAAAATCTGTAACAGAAAGGTCCTCACACCGWAAACTTTGAATTCTTATATCTTGCTTCCTGTGCATTTTATCAAAAATGTGTCAACAGACAAAATACTCGTGATATTATAATCAACAATTTGTCAGTTCAGAATTCTTCAAGAGGATCCGAGATGAATTAGTACACAATTCTTTGTTTTTTTTACAGGAACAAAATTACAGGGTGCGGCAAAAGTTCTGTTACCAAGTTTACCTCAAGCTGGCGCGAGCTAACCTTCTTTTCGTGCACTGATTTTATTTCCATATTTTTCTCAGTCTCGTCATTAGTACAAAGTTTCATGTTTCTACCTCAATTTTTACGAAAATGGCAACACCCGTCAAAAAATCTTCGCCTTCTTTGATGTTTTTCCTGAATTTCTGGCACGCGCTTGACCACTGCTTTCATTGATGAGCCACTGTTCAGCTTAGAGGCAAAACTCAATTCTCAAAATTGTCAGGTTTGGCACAATTTCCTTAGCTATCTCACAGTGATGGTCTGTTGATTCTCTGGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>498 407 70 25</canonical_bands>
                <polymorphic_bands>905 70 25</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 266 80 66 51 36</canonical_bands>
                <polymorphic_bands>552 266 80 66 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTTGACTTAATTCCGACATC</pcr_primer_p1>
		<pcr_primer_p2>CCTGTAATTTTGTTCCTGTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>TTCTTGACTTAATTCCGACATCGAACTACCCCAAAATCTGTAACAGAAAGGTCCTCACACCGTAAACTTTGAATTCTTATATCTTGCTTCCTGTGCATTTTATCAAAAATGTGTCAACAGACAAAATACTCGTGATATTATAATCAACAATTTGTCAGTTCAGAATTCTTCAAGAGGATCCGAGATGAATTAGTACACAATTCTTTGTTTTTTTTACAGGAACAAAATTACAGG</canonical_amplicon>
		<polymorphic_amplicon>TTCTTGACTTAATTCCGACATCGAACTACCCCAAAATCTGTAACAGAAAGGTCCTCACACCGWAAACTTTGAATTCTTATATCTTGCTTCCTGTGCATTTTATCAAAAATGTGTCAACAGACAAAATACTCGTGATATTATAATCAACAATTTGTCAGTTCAGAATTCTTCAAGAGGATCCGAGATGAATTAGTACACAATTCTTTGTTTTTTTTACAGGAACAAAATTACAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38294</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>631238</contig_pos>
        <strand>+</strand>
        <context>GTTCAGCTTA[A/G]AGGCAAAACT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGGCACGCGCTTGACCACTGCTTTCATTGATGAGCCACTGTTCAGCTTA</left_flank>
        <right_flank>AGGCAAAACTCAATTCTCAAAATTGTCAGGTTTGGCACAATTTCCTTAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTTGAAAAAAATTTATCCATTCTTGACTTAATTCCGACATCGAACTACCCCAAAATCTGTAACAGAAAGGTCCTCACACCGTAAACTTTGAATTCTTATATCTTGCTTCCTGTGCATTTTATCAAAAATGTGTCAACAGACAAAATACTCGTGATATTATAATCAACAATTTGTCAGTTCAGAATTCTTCAAGAGGATCCGAGATGAATTAGTACACAATTCTTTGTTTTTTTTACAGGAACAAAATTACAGGGTGCGGCAAAAGTTCTGTTACCAAGTTTACCTCAAGCTGGCGCGAGCTAACCTTCTTTTCGTGCACTGATTTTATTTCCATATTTTTCTCAGTCTCGTCATTAGTACAAAGTTTCATGTTTCTACCTCAATTTTTACGAAAATGGCAACACCCGTCAAAAAATCTTCGCCTTCTTTGATGTTTTTCCTGAATTTCTGGCACGCGCTTGACCACTGCTTTCATTGATGAGCCACTGTTCAGCTTAGAGGCAAAACTCAATTCTCAAAATTGTCAGGTTTGGCACAATTTCCTTAGCTATCTCACAGTGATGGTCTGTTGATTCTCTGGGCAGCCAATCATCAGCAGTTCATGAAGCTTGCAGGAATTACTTCAAATCGGGAAGAATCACTGTTTTCGGTCGAGCCAGGTGTGTAAGTGTACCATGCATACCACTTTTAGTAATAACCATACTGCCCAATTCATGATCTAACTTTGGAAAGCAAACTGAGACTCTTCAAAAAAATGTCGCGCCTGCTGAGACGGCAAAACATGTTCGGCAGGAGGGCCAATCCAATTTCTACAATTGGATCCCCGAAAAAGAATGGCCTGTCTCTAGTCAGATCACGATGGGGGTTTTCGTGCAAGGAACTTTTTGAGCATATGTTCAATTTTGTTGACATACAATGTTGGATGCGCTTGTATAGAGCTTTATTTGTGTAGTTCACACCCTTTTTGTACAATAATCACTAGCTGGAGAGATATATTT</canonical>
            <polymorphic>ACTTTGAAAAAAATTTATCCATTCTTGACTTAATTCCGACATCGAACTACCCCAAAATCTGTAACAGAAAGGTCCTCACACCGTAAACTTTGAATTCTTATATCTTGCTTCCTGTGCATTTTATCAAAAATGTGTCAACAGACAAAATACTCGTGATATTATAATCAACAATTTGTCAGTTCAGAATTCTTCAAGAGGATCCGAGATGAATTAGTACACAATTCTTTGTTTTTTTTACAGGAACAAAATTACAGGGTGCGGCAAAAGTTCTGTTACCAAGTTTACCTCAAGCTGGCGCGAGCTAACCTTCTTTTCGTGCACTGATTTTATTTCCATATTTTTCTCAGTCTCGTCATTAGTACAAAGTTTCATGTTTCTACCTCAATTTTTACGAAAATGGCAACACCCGTCAAAAAATCTTCGCCTTCTTTGATGTTTTTCCTGAATTTCTGGCACGCGCTTGACCACTGCTTTCATTGATGAGCCACTGTTCAGCTTARAGGCAAAACTCAATTCTCAAAATTGTCAGGTTTGGCACAATTTCCTTAGCTATCTCACAGTGATGGTCTGTTGATTCTCTGGGCAGCCAATCATCAGCAGTTCATGAAGCTTGCAGGAATTACTTCAAATCGGGAAGAATCACTGTTTTCGGTCGAGCCAGGTGTGTAAGTGTACCATGCATACCACTTTTAGTAATAACCATACTGCCCAATTCATGATCTAACTTTGGAAAGCAAACTGAGACTCTTCAAAAAAATGTCGCGCCTGCTGAGACGGCAAAACATGTTCGGCAGGAGGGCCAATCCAATTTCTACAATTGGATCCCCGAAAAAGAATGGCCTGTCTCTAGTCAGATCACGATGGGGGTTTTCGTGCAAGGAACTTTTTGAGCATATGTTCAATTTTGTTGACATACAATGTTGGATGCGCTTGTATAGAGCTTTATTTGTGTAGTTCACACCCTTTTTGTACAATAATCACTAGCTGGAGAGATATATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>343 231 194 153 49 30</canonical_bands>
                <polymorphic_bands>343 231 202 194 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCACTGATTTTATTTCCATATT</pcr_primer_p1>
		<pcr_primer_p2>ACCATCACTGTGAGATAGCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGCACTGATTTTATTTCCATATTTTTCTCAGTCTCGTCATTAGTACAAAGTTTCATGTTTCTACCTCAATTTTTACGAAAATGGCAACACCCGTCAAAAAATCTTCGCCTTCTTTGATGTTTTTCCTGAATTTCTGGCACGCGCTTGACCACTGCTTTCATTGATGAGCCACTGTTCAGCTTAGAGGCAAAACTCAATTCTCAAAATTGTCAGGTTTGGCACAATTTCCTTAGCTATCTCACAGTGATGGT</canonical_amplicon>
		<polymorphic_amplicon>TGCACTGATTTTATTTCCATATTTTTCTCAGTCTCGTCATTAGTACAAAGTTTCATGTTTCTACCTCAATTTTTACGAAAATGGCAACACCCGTCAAAAAATCTTCGCCTTCTTTGATGTTTTTCCTGAATTTCTGGCACGCGCTTGACCACTGCTTTCATTGATGAGCCACTGTTCAGCTTARAGGCAAAACTCAATTCTCAAAATTGTCAGGTTTGGCACAATTTCCTTAGCTATCTCACAGTGATGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38295</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>633080</contig_pos>
        <strand>+</strand>
        <context>TGCAGAACTT[C/T]TTAAAAAATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGACATTTTAAAAGCACGGCTTGTCGAAATTTCCAAATCCTGCAGAACTT</left_flank>
        <right_flank>TTAAAAAATGCTTATAAAAGGCTCATATTTCATTTTGAAGGCGCCCATGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCTCATTTTGTCTAAGGCTGTTCCACTGCCGGTTGCAGCATTTTTCATTTTATTTTCTGGGATAGGTAGGATATGGTGGTTTAGCGGCTCTATTCCTTCTGGATCGTTAAGAGTACCGTATTTCTCCTCAGCGAAGCCCTTTCAAACTGTCCATTTTTAAGCTTATTTATCTTGATTCTTGTGAGAGATATCAAAAATTTGTCAACTGATAAATAATTTATCAAACTATTTCCAATATGTTATCGTTGACGACTTGATCACATCCTCATAGGAATTGAGATAATCGAATTCAAAGTGGACAGTGAGTGGGCTTCAATTAGAGGAAATAAGTTATTTTCAAAAAACATGCATTTTGGTCCACGGCAACCTACACATGACCTGAGTCACAACCGGTTGCGTAAGCAATTTGCACATCTTTAATTTCTATAGATGTTCGTTAGTTTTGAGCGACATTTTAAAAGCACGGCTTGTCGAAATTTCCAAATCCTGCAGAACTTTTTAAAAAATGCTTATAAAAGGCTCATATTTCATTTTGAAGGCGCCCATGTTTTAAAGCGATTTCCAAAGCCTAGTTCGAATTAATTATCTTGTTAGTTTAAAAGATTAATTAGATTCATTCTAGTTTTGACAAGATTATCTCTTCGACATTGGTTTTCACAGCTTCAGCAAGTAGTTACCCGGCCAGTGAGGCAAAAAATAATTTTCCAGAAATGTTTCGCAAGGTTGATGAGCGAATCATATTTGGATGATCTGAACTGGCTCACAACTACAGGTTGGAAATTGTGAAATTTTCCGACTTTCAGTAACTGTCGCGTTGCTGACATTATCAACCTTTTGAAAAACAATTCGTTGCCTCACCGGCCTGCCATCCACCTTTGCTTTTTTTTAAGTAACAAAAAATATCACTGTTCAAATTTACCTATTCTCTCCAGCCCTCAACCGTAATGAAAAAACCTGTTCAGAGCAGTTTTTCAATGATTGCAATGTACTCTTGCTCA</canonical>
            <polymorphic>TTCCTCATTTTGTCTAAGGCTGTTCCACTGCCGGTTGCAGCATTTTTCATTTTATTTTCTGGGATAGGTAGGATATGGTGGTTTAGCGGCTCTATTCCTTCTGGATCGTTAAGAGTACCGTATTTCTCCTCAGCGAAGCCCTTTCAAACTGTCCATTTTTAAGCTTATTTATCTTGATTCTTGTGAGAGATATCAAAAATTTGTCAACTGATAAATAATTTATCAAACTATTTCCAATATGTTATCGTTGACGACTTGATCACATCCTCATAGGAATTGAGATAATCGAATTCAAAGTGGACAGTGAGTGGGCTTCAATTAGAGGAAATAAGTTATTTTCAAAAAACATGCATTTTGGTCCACGGCAACCTACACATGACCTGAGTCACAACCGGTTGCGTAAGCAATTTGCACATCTTTAATTTCTATAGATGTTCGTTAGTTTTGAGCGACATTTTAAAAGCACGGCTTGTCGAAATTTCCAAATCCTGCAGAACTTYTTAAAAAATGCTTATAAAAGGCTCATATTTCATTTTGAAGGCGCCCATGTTTTAAAGCGATTTCCAAAGCCTAGTTCGAATTAATTATCTTGTTAGTTTAAAAGATTAATTAGATTCATTCTAGTTTTGACAAGATTATCTCTTCGACATTGGTTTTCACAGCTTCAGCAAGTAGTTACCCGGCCAGTGAGGCAAAAAATAATTTTCCAGAAATGTTTCGCAAGGTTGATGAGCGAATCATATTTGGATGATCTGAACTGGCTCACAACTACAGGTTGGAAATTGTGAAATTTTCCGACTTTCAGTAACTGTCGCGTTGCTGACATTATCAACCTTTTGAAAAACAATTCGTTGCCTCACCGGCCTGCCATCCACCTTTGCTTTTTTTTAAGTAACAAAAAATATCACTGTTCAAATTTACCTATTCTCTCCAGCCCTCAACCGTAATGAAAAAACCTGTTCAGAGCAGTTTTTCAATGATTGCAATGTACTCTTGCTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>458 401 51 46 44</canonical_bands>
                <polymorphic_bands>458 401 95 46</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAAGCAATTTGCACATCTTTAAT</pcr_primer_p1>
		<pcr_primer_p2>CGAAGAGATAATCTTGTCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TAAGCAATTTGCACATCTTTAATTTCTATAGATGTTCGTTAGTTTTGAGCGACATTTTAAAAGCACGGCTTGTCGAAATTTCCAAATCCTGCAGAACTTTTTAAAAAATGCTTATAAAAGGCTCATATTTCATTTTGAAGGCGCCCATGTTTTAAAGCGATTTCCAAAGCCTAGTTCGAATTAATTATCTTGTTAGTTTAAAAGATTAATTAGATTCATTCTAGTTTTGACAAGATTATCTCTTCG</canonical_amplicon>
		<polymorphic_amplicon>TAAGCAATTTGCACATCTTTAATTTCTATAGATGTTCGTTAGTTTTGAGCGACATTTTAAAAGCACGGCTTGTCGAAATTTCCAAATCCTGCAGAACTTYTTAAAAAATGCTTATAAAAGGCTCATATTTCATTTTGAAGGCGCCCATGTTTTAAAGCGATTTCCAAAGCCTAGTTCGAATTAATTATCTTGTTAGTTTAAAAGATTAATTAGATTCATTCTAGTTTTGACAAGATTATCTCTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38296</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>633106</contig_pos>
        <strand>+</strand>
        <context>AAAAGGCTCA[A/T]ATTTCATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATTTCCAAATCCTGCAGAACTTTTTAAAAAATGCTTATAAAAGGCTCA</left_flank>
        <right_flank>ATTTCATTTTGAAGGCGCCCATGTTTTAAAGCGATTTCCAAAGCCTAGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTGCCGGTTGCAGCATTTTTCATTTTATTTTCTGGGATAGGTAGGATATGGTGGTTTAGCGGCTCTATTCCTTCTGGATCGTTAAGAGTACCGTATTTCTCCTCAGCGAAGCCCTTTCAAACTGTCCATTTTTAAGCTTATTTATCTTGATTCTTGTGAGAGATATCAAAAATTTGTCAACTGATAAATAATTTATCAAACTATTTCCAATATGTTATCGTTGACGACTTGATCACATCCTCATAGGAATTGAGATAATCGAATTCAAAGTGGACAGTGAGTGGGCTTCAATTAGAGGAAATAAGTTATTTTCAAAAAACATGCATTTTGGTCCACGGCAACCTACACATGACCTGAGTCACAACCGGTTGCGTAAGCAATTTGCACATCTTTAATTTCTATAGATGTTCGTTAGTTTTGAGCGACATTTTAAAAGCACGGCTTGTCGAAATTTCCAAATCCTGCAGAACTTTTTAAAAAATGCTTATAAAAGGCTCATATTTCATTTTGAAGGCGCCCATGTTTTAAAGCGATTTCCAAAGCCTAGTTCGAATTAATTATCTTGTTAGTTTAAAAGATTAATTAGATTCATTCTAGTTTTGACAAGATTATCTCTTCGACATTGGTTTTCACAGCTTCAGCAAGTAGTTACCCGGCCAGTGAGGCAAAAAATAATTTTCCAGAAATGTTTCGCAAGGTTGATGAGCGAATCATATTTGGATGATCTGAACTGGCTCACAACTACAGGTTGGAAATTGTGAAATTTTCCGACTTTCAGTAACTGTCGCGTTGCTGACATTATCAACCTTTTGAAAAACAATTCGTTGCCTCACCGGCCTGCCATCCACCTTTGCTTTTTTTTAAGTAACAAAAAATATCACTGTTCAAATTTACCTATTCTCTCCAGCCCTCAACCGTAATGAAAAAACCTGTTCAGAGCAGTTTTTCAATGATTGCAATGTACTCTTGCTCAGCGTGTTCTAGAAGCCATATTCTCAT</canonical>
            <polymorphic>ACTGCCGGTTGCAGCATTTTTCATTTTATTTTCTGGGATAGGTAGGATATGGTGGTTTAGCGGCTCTATTCCTTCTGGATCGTTAAGAGTACCGTATTTCTCCTCAGCGAAGCCCTTTCAAACTGTCCATTTTTAAGCTTATTTATCTTGATTCTTGTGAGAGATATCAAAAATTTGTCAACTGATAAATAATTTATCAAACTATTTCCAATATGTTATCGTTGACGACTTGATCACATCCTCATAGGAATTGAGATAATCGAATTCAAAGTGGACAGTGAGTGGGCTTCAATTAGAGGAAATAAGTTATTTTCAAAAAACATGCATTTTGGTCCACGGCAACCTACACATGACCTGAGTCACAACCGGTTGCGTAAGCAATTTGCACATCTTTAATTTCTATAGATGTTCGTTAGTTTTGAGCGACATTTTAAAAGCACGGCTTGTCGAAATTTCCAAATCCTGCAGAACTTTTTAAAAAATGCTTATAAAAGGCTCAWATTTCATTTTGAAGGCGCCCATGTTTTAAAGCGATTTCCAAAGCCTAGTTCGAATTAATTATCTTGTTAGTTTAAAAGATTAATTAGATTCATTCTAGTTTTGACAAGATTATCTCTTCGACATTGGTTTTCACAGCTTCAGCAAGTAGTTACCCGGCCAGTGAGGCAAAAAATAATTTTCCAGAAATGTTTCGCAAGGTTGATGAGCGAATCATATTTGGATGATCTGAACTGGCTCACAACTACAGGTTGGAAATTGTGAAATTTTCCGACTTTCAGTAACTGTCGCGTTGCTGACATTATCAACCTTTTGAAAAACAATTCGTTGCCTCACCGGCCTGCCATCCACCTTTGCTTTTTTTTAAGTAACAAAAAATATCACTGTTCAAATTTACCTATTCTCTCCAGCCCTCAACCGTAATGAAAAAACCTGTTCAGAGCAGTTTTTCAATGATTGCAATGTACTCTTGCTCAGCGTGTTCTAGAAGCCATATTCTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGCAATTTGCACATCTTTAAT</pcr_primer_p1>
		<pcr_primer_p2>CGAAGAGATAATCTTGTCAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TAAGCAATTTGCACATCTTTAATTTCTATAGATGTTCGTTAGTTTTGAGCGACATTTTAAAAGCACGGCTTGTCGAAATTTCCAAATCCTGCAGAACTTTTTAAAAAATGCTTATAAAAGGCTCATATTTCATTTTGAAGGCGCCCATGTTTTAAAGCGATTTCCAAAGCCTAGTTCGAATTAATTATCTTGTTAGTTTAAAAGATTAATTAGATTCATTCTAGTTTTGACAAGATTATCTCTTCG</canonical_amplicon>
		<polymorphic_amplicon>TAAGCAATTTGCACATCTTTAATTTCTATAGATGTTCGTTAGTTTTGAGCGACATTTTAAAAGCACGGCTTGTCGAAATTTCCAAATCCTGCAGAACTTTTTAAAAAATGCTTATAAAAGGCTCAWATTTCATTTTGAAGGCGCCCATGTTTTAAAGCGATTTCCAAAGCCTAGTTCGAATTAATTATCTTGTTAGTTTAAAAGATTAATTAGATTCATTCTAGTTTTGACAAGATTATCTCTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38297</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>711760</contig_pos>
        <strand>+</strand>
        <context>CTTCATAGTT[G/T]GTCGGGGGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAATGTAACCACTTTTTCGCCGTCGTATGATTTCATGTCTCTTCATAGTT</left_flank>
        <right_flank>GTCGGGGGACCCTCTTCTTTGATCGTTACTGTGCGTAGCGTGCCGCGTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATAGAGTCATCCTAGAGCACCTCCGAACAATAGAGTGTCAGCTTCTAATATAATGCCACTGCTGACTTGATTTTACTGTGGTAAAAGTTAAAGAGCAACAAAAAATCGTTTTCTGGCTTTCTAGCTTTTTTTCAGAGGTACTGTAATTGTCAAAAAATGATTCAGGATGATATCAGGCTCCGAAATTTAGGCTGACTCCAAAAAAATAGAAAAATCAAGAAAAACTCAAAAATCGTTTTATGAAAGAGTTGTAAATAAAGTGCTTTTGTGAAGAGTTTTAGTAGAATTTCTCTCCGAAAGATAAAGTGCCAGTCTCTAATTGAATGCCACCCCTAATACAGTGCCACCCCAGACCACCTCCGAACAATAGAGTTTTCCGGTAGTTTTTTTTTCATGATTTCCCAGCAATTTTTTCGATGAATTCGTCATTTGGTAGTTATTCAAAGCAATGTAACCACTTTTTCGCCGTCGTATGATTTCATGTCTCTTCATAGTTTGTCGGGGGACCCTCTTCTTTGATCGTTACTGTGCGTAGCGTGCCGCGTCGCGGTCGTCCTCGGCCTGCAGTGCACACATCGTTGGAAGTCTGAATTAAAATGTGAAAATAAGAAAAAATGTTGTATTCAGATAAAATAAAATTTAATTTACTAACAAAAAAAGTCATATCAGATAAGTTTATATTTCCAGCACATTAAAAAAAAACAATGACCGGTGAAAATGATTGAAATCGGACAAAATTCCACCAAAAAGTCTTCTGTTTCATTTCAGAACCGCCACCGTGTGCAATGATGACTATGACTATTGGATGAGTCTTCCGATCCGTTAAATGATTCGCGCTATCTGCCGTACTGCGCACTTTTGTCACCAATTGAAAAAATTTGACATTGATTTCGAAAATTCTCCTGCTCCGAATTAGCTCTTGAGTTCCGCCGTCTGATTACACCTGTAAAGTTTTGTTATTCTTTTTTCAAGTATTAATTGTTTGTAACTTACCAAA</canonical>
            <polymorphic>AATATAGAGTCATCCTAGAGCACCTCCGAACAATAGAGTGTCAGCTTCTAATATAATGCCACTGCTGACTTGATTTTACTGTGGTAAAAGTTAAAGAGCAACAAAAAATCGTTTTCTGGCTTTCTAGCTTTTTTTCAGAGGTACTGTAATTGTCAAAAAATGATTCAGGATGATATCAGGCTCCGAAATTTAGGCTGACTCCAAAAAAATAGAAAAATCAAGAAAAACTCAAAAATCGTTTTATGAAAGAGTTGTAAATAAAGTGCTTTTGTGAAGAGTTTTAGTAGAATTTCTCTCCGAAAGATAAAGTGCCAGTCTCTAATTGAATGCCACCCCTAATACAGTGCCACCCCAGACCACCTCCGAACAATAGAGTTTTCCGGTAGTTTTTTTTTCATGATTTCCCAGCAATTTTTTCGATGAATTCGTCATTTGGTAGTTATTCAAAGCAATGTAACCACTTTTTCGCCGTCGTATGATTTCATGTCTCTTCATAGTTKGTCGGGGGACCCTCTTCTTTGATCGTTACTGTGCGTAGCGTGCCGCGTCGCGGTCGTCCTCGGCCTGCAGTGCACACATCGTTGGAAGTCTGAATTAAAATGTGAAAATAAGAAAAAATGTTGTATTCAGATAAAATAAAATTTAATTTACTAACAAAAAAAGTCATATCAGATAAGTTTATATTTCCAGCACATTAAAAAAAAACAATGACCGGTGAAAATGATTGAAATCGGACAAAATTCCACCAAAAAGTCTTCTGTTTCATTTCAGAACCGCCACCGTGTGCAATGATGACTATGACTATTGGATGAGTCTTCCGATCCGTTAAATGATTCGCGCTATCTGCCGTACTGCGCACTTTTGTCACCAATTGAAAAAATTTGACATTGATTTCGAAAATTCTCCTGCTCCGAATTAGCTCTTGAGTTCCGCCGTCTGATTACACCTGTAAAGTTTTGTTATTCTTTTTTCAAGTATTAATTGTTTGTAACTTACCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTCAAAGCAATGTAACCACTT</pcr_primer_p1>
		<pcr_primer_p2>TGCTGGAAATATAAACTTATCTGA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATTCAAAGCAATGTAACCACTTTTTCGCCGTCGTATGATTTCATGTCTCTTCATAGTTTGTCGGGGGACCCTCTTCTTTGATCGTTACTGTGCGTAGCGTGCCGCGTCGCGGTCGTCCTCGGCCTGCAGTGCACACATCGTTGGAAGTCTGAATTAAAATGTGAAAATAAGAAAAAATGTTGTATTCAGATAAAATAAAATTTAATTTACTAACAAAAAAAGTCATATCAGATAAGTTTATATTTCCAGCA</canonical_amplicon>
		<polymorphic_amplicon>TATTCAAAGCAATGTAACCACTTTTTCGCCGTCGTATGATTTCATGTCTCTTCATAGTTKGTCGGGGGACCCTCTTCTTTGATCGTTACTGTGCGTAGCGTGCCGCGTCGCGGTCGTCCTCGGCCTGCAGTGCACACATCGTTGGAAGTCTGAATTAAAATGTGAAAATAAGAAAAAATGTTGTATTCAGATAAAATAAAATTTAATTTACTAACAAAAAAAGTCATATCAGATAAGTTTATATTTCCAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38298</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>711786</contig_pos>
        <strand>+</strand>
        <context>TCTTTGATCG[C/T]TACTGTGCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGATTTCATGTCTCTTCATAGTTTGTCGGGGGACCCTCTTCTTTGATCG</left_flank>
        <right_flank>TACTGTGCGTAGCGTGCCGCGTCGCGGTCGTCCTCGGCCTGCAGTGCACA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAACAATAGAGTGTCAGCTTCTAATATAATGCCACTGCTGACTTGATTTTACTGTGGTAAAAGTTAAAGAGCAACAAAAAATCGTTTTCTGGCTTTCTAGCTTTTTTTCAGAGGTACTGTAATTGTCAAAAAATGATTCAGGATGATATCAGGCTCCGAAATTTAGGCTGACTCCAAAAAAATAGAAAAATCAAGAAAAACTCAAAAATCGTTTTATGAAAGAGTTGTAAATAAAGTGCTTTTGTGAAGAGTTTTAGTAGAATTTCTCTCCGAAAGATAAAGTGCCAGTCTCTAATTGAATGCCACCCCTAATACAGTGCCACCCCAGACCACCTCCGAACAATAGAGTTTTCCGGTAGTTTTTTTTTCATGATTTCCCAGCAATTTTTTCGATGAATTCGTCATTTGGTAGTTATTCAAAGCAATGTAACCACTTTTTCGCCGTCGTATGATTTCATGTCTCTTCATAGTTTGTCGGGGGACCCTCTTCTTTGATCGTTACTGTGCGTAGCGTGCCGCGTCGCGGTCGTCCTCGGCCTGCAGTGCACACATCGTTGGAAGTCTGAATTAAAATGTGAAAATAAGAAAAAATGTTGTATTCAGATAAAATAAAATTTAATTTACTAACAAAAAAAGTCATATCAGATAAGTTTATATTTCCAGCACATTAAAAAAAAACAATGACCGGTGAAAATGATTGAAATCGGACAAAATTCCACCAAAAAGTCTTCTGTTTCATTTCAGAACCGCCACCGTGTGCAATGATGACTATGACTATTGGATGAGTCTTCCGATCCGTTAAATGATTCGCGCTATCTGCCGTACTGCGCACTTTTGTCACCAATTGAAAAAATTTGACATTGATTTCGAAAATTCTCCTGCTCCGAATTAGCTCTTGAGTTCCGCCGTCTGATTACACCTGTAAAGTTTTGTTATTCTTTTTTCAAGTATTAATTGTTTGTAACTTACCAAATATAAAATGAAACCAACCGAATTCGA</canonical>
            <polymorphic>CGAACAATAGAGTGTCAGCTTCTAATATAATGCCACTGCTGACTTGATTTTACTGTGGTAAAAGTTAAAGAGCAACAAAAAATCGTTTTCTGGCTTTCTAGCTTTTTTTCAGAGGTACTGTAATTGTCAAAAAATGATTCAGGATGATATCAGGCTCCGAAATTTAGGCTGACTCCAAAAAAATAGAAAAATCAAGAAAAACTCAAAAATCGTTTTATGAAAGAGTTGTAAATAAAGTGCTTTTGTGAAGAGTTTTAGTAGAATTTCTCTCCGAAAGATAAAGTGCCAGTCTCTAATTGAATGCCACCCCTAATACAGTGCCACCCCAGACCACCTCCGAACAATAGAGTTTTCCGGTAGTTTTTTTTTCATGATTTCCCAGCAATTTTTTCGATGAATTCGTCATTTGGTAGTTATTCAAAGCAATGTAACCACTTTTTCGCCGTCGTATGATTTCATGTCTCTTCATAGTTTGTCGGGGGACCCTCTTCTTTGATCGYTACTGTGCGTAGCGTGCCGCGTCGCGGTCGTCCTCGGCCTGCAGTGCACACATCGTTGGAAGTCTGAATTAAAATGTGAAAATAAGAAAAAATGTTGTATTCAGATAAAATAAAATTTAATTTACTAACAAAAAAAGTCATATCAGATAAGTTTATATTTCCAGCACATTAAAAAAAAACAATGACCGGTGAAAATGATTGAAATCGGACAAAATTCCACCAAAAAGTCTTCTGTTTCATTTCAGAACCGCCACCGTGTGCAATGATGACTATGACTATTGGATGAGTCTTCCGATCCGTTAAATGATTCGCGCTATCTGCCGTACTGCGCACTTTTGTCACCAATTGAAAAAATTTGACATTGATTTCGAAAATTCTCCTGCTCCGAATTAGCTCTTGAGTTCCGCCGTCTGATTACACCTGTAAAGTTTTGTTATTCTTTTTTCAAGTATTAATTGTTTGTAACTTACCAAATATAAAATGAAACCAACCGAATTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>427 339 124 71 39</canonical_bands>
                <polymorphic_bands>427 410 124 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTCAAAGCAATGTAACCACTT</pcr_primer_p1>
		<pcr_primer_p2>TGCTGGAAATATAAACTTATCTGA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATTCAAAGCAATGTAACCACTTTTTCGCCGTCGTATGATTTCATGTCTCTTCATAGTTTGTCGGGGGACCCTCTTCTTTGATCGTTACTGTGCGTAGCGTGCCGCGTCGCGGTCGTCCTCGGCCTGCAGTGCACACATCGTTGGAAGTCTGAATTAAAATGTGAAAATAAGAAAAAATGTTGTATTCAGATAAAATAAAATTTAATTTACTAACAAAAAAAGTCATATCAGATAAGTTTATATTTCCAGCA</canonical_amplicon>
		<polymorphic_amplicon>TATTCAAAGCAATGTAACCACTTTTTCGCCGTCGTATGATTTCATGTCTCTTCATAGTTTGTCGGGGGACCCTCTTCTTTGATCGYTACTGTGCGTAGCGTGCCGCGTCGCGGTCGTCCTCGGCCTGCAGTGCACACATCGTTGGAAGTCTGAATTAAAATGTGAAAATAAGAAAAAATGTTGTATTCAGATAAAATAAAATTTAATTTACTAACAAAAAAAGTCATATCAGATAAGTTTATATTTCCAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38299</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>727372</contig_pos>
        <strand></strand>
        <context>AATTTGAACA[C/T]TGTCTAATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAGTACCAGCAGAATTGGCGAGAATGAGAAGGGACAATAATTTGAACA</left_flank>
        <right_flank>TGTCTAATTTCATGATATTTTGGATCTGGCTGCGATTTTTCTTTGCATGA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTAAGATTCTAAAAATAAAAAAAATCAAATACTAACTATGTGATCAAAAAAGTTTTGTGAGACCCCATTGAAATAAAAGTTATTGTTTTATACTTTTAAAAAGGTATTTAAAATGAAATCGTTTTCGCGAAGTTCTAACATCTTTATATTCAGATTTCCAAACGGCCAACAAGTTCAAATCAAACGTTTGGAATATGAATCTGGAGATAGGCGGTTCCAACAGTACCCTCTCCGTTTGGCTTATGCCCATACAATCGAGAGAGCACAGGGAGCCACTTTCGATGGAATCATGCTTGTCAGAAACCACACCTGGAACCCAGAAAAAATTTGTAGTTGACTTAATCACCGTGAATTCCACGGAAAATTGTACACAGCAATGTCTCGATGCCGCAACATTCAAAATTGTGGAATTATCCCTATGGGATTGTTACAATGGATTGTTGTACCAGAAGTACCAGCAGAATTGGCGAGAATGAGAAGGGACAATAATTTGAACACTGTCTAATTTCATGATATTTTGGATCTGGCTGCGATTTTTCTTTGCATGATTCAGCATCATCATTTTCCTGTTTAATTAACAAATAAGTAATTTCAATTGCAGTCCAGATTTATTTTAACTTTTGATTTTTTTAATGAAGAAGATTTGATAATTAACTGCAGTTATATTCCAAAATTATCCTCTCCAATTTTGACCTGTCCCGTGTTACAAACAACGCAAACTTTTTGTGCTCCTCGCGAGTTGTCAAACCAATGCTTGATGCACTAAAAATTTCGAAATCAATTGAATTTCTTAGTGTTGGCAAAACCTTGTTATGGAAAATACCCTTGCAGTTTGGAGTCATACACCTAGATATCGGTAACGGCACGTAGCAAATCATACACGCATCTGGGTCGAATACTCCTTTGAGGCGTTTGTTCTCCTCGAGAAGAGCGTTTTTCGCTTCCATTTCTTCTCGAAGTTGACGTTCGAGCGTCTGAACGTGATGTTCCAGGTTTTG</canonical>
            <polymorphic>TTTTAAGATTCTAAAAATAAAAAAAATCAAATACTAACTATGTGATCAAAAAAGTTTTGTGAGACCCCATTGAAATAAAAGTTATTGTTTTATACTTTTAAAAAGGTATTTAAAATGAAATCGTTTTCGCGAAGTTCTAACATCTTTATATTCAGATTTCCAAACGGCCAACAAGTTCAAATCAAACGTTTGGAATATGAATCTGGAGATAGGCGGTTCCAACAGTACCCTCTCCGTTTGGCTTATGCCCATACAATCGAGAGAGCACAGGGAGCCACTTTCGATGGAATCATGCTTGTCAGAAACCACACCTGGAACCCAGAAAAAATTTGTAGTTGACTTAATCACCGTGAATTCCACGGAAAATTGTACACAGCAATGTCTCGATGCCGCAACATTCAAAATTGTGGAATTATCCCTATGGGATTGTTACAATGGATTGTTGTACCAGAAGTACCAGCAGAATTGGCGAGAATGAGAAGGGACAATAATTTGAACAYTGTCTAATTTCATGATATTTTGGATCTGGCTGCGATTTTTCTTTGCATGATTCAGCATCATCATTTTCCTGTTTAATTAACAAATAAGTAATTTCAATTGCAGTCCAGATTTATTTTAACTTTTGATTTTTTTAATGAAGAAGATTTGATAATTAACTGCAGTTATATTCCAAAATTATCCTCTCCAATTTTGACCTGTCCCGTGTTACAAACAACGCAAACTTTTTGTGCTCCTCGCGAGTTGTCAAACCAATGCTTGATGCACTAAAAATTTCGAAATCAATTGAATTTCTTAGTGTTGGCAAAACCTTGTTATGGAAAATACCCTTGCAGTTTGGAGTCATACACCTAGATATCGGTAACGGCACGTAGCAAATCATACACGCATCTGGGTCGAATACTCCTTTGAGGCGTTTGTTCTCCTCGAGAAGAGCGTTTTTCGCTTCCATTTCTTCTCGAAGTTGACGTTCGAGCGTCTGAACGTGATGTTCCAGGTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>499 224 152 125</canonical_bands>
                <polymorphic_bands>651 224 125</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>206 206 102 90 49 44 37 36 34 34 31 25 20 17 16 15 14 10 7 5 2</canonical_bands>
                <polymorphic_bands>296 206 102 49 44 37 36 34 34 31 25 20 17 16 15 14 10 7 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTGTTGTACCAGAAGTACCAG</pcr_primer_p1>
		<pcr_primer_p2>TGGAGAGGATAATTTTGGAATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATTGTTGTACCAGAAGTACCAGCAGAATTGGCGAGAATGAGAAGGGACAATAATTTGAACACTGTCTAATTTCATGATATTTTGGATCTGGCTGCGATTTTTCTTTGCATGATTCAGCATCATCATTTTCCTGTTTAATTAACAAATAAGTAATTTCAATTGCAGTCCAGATTTATTTTAACTTTTGATTTTTTTAATGAAGAAGATTTGATAATTAACTGCAGTTATATTCCAAAATTATCCTCTCCA</canonical_amplicon>
		<polymorphic_amplicon>GATTGTTGTACCAGAAGTACCAGCAGAATTGGCGAGAATGAGAAGGGACAATAATTTGAACAYTGTCTAATTTCATGATATTTTGGATCTGGCTGCGATTTTTCTTTGCATGATTCAGCATCATCATTTTCCTGTTTAATTAACAAATAAGTAATTTCAATTGCAGTCCAGATTTATTTTAACTTTTGATTTTTTTAATGAAGAAGATTTGATAATTAACTGCAGTTATATTCCAAAATTATCCTCTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38300</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>737514</contig_pos>
        <strand>+</strand>
        <context>TCCAGAAAAC[C/T]TTTTTTTGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATAAGACACTGAAAACGCTATGGAAAAAATGTGAAAGTTTCCAGAAAAC</left_flank>
        <right_flank>TTTTTTTGTTTTTTCATGAATATTTTCTCACTAAACATGTCCATACCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGTGAGAATCCTTTGATATGACGATGTTCTCGTGCACTGCATTGAAACAGCGCATTACCAGAACTCCATATTCTATATTCAGTTTATCTTCGGTGAGTTTTTCATTTAGAATCATGAGTTATTGTCTTTATAATTTTTCTGGGACATGTTTTGAAATGGATATAATGTAAAAAACGATGTATGACCCAAATATAAACCTTAGACAGAAAAACAAACTACACTCTATAAGGTCTAATATAAAGTCATATTCCAGGAGTTCTGATTGTTTTGAAAATATCAATGAGGATTTTGCCAGATTAAGAAATAAAAAAAGTAACATGGAAAAAAAGAAATTCTTAAAATTCAGAAATTTGAAAAATAAATGTTTACAGTAGCTCTAGTTCCTTTCACTAGCATTTTGAAGAGTTAGTACGGTAATTCCGTAGCTTCTCATAAGTTTTTTGAACAAATAAGACACTGAAAACGCTATGGAAAAAATGTGAAAGTTTCCAGAAAACTTTTTTTTGTTTTTTCATGAATATTTTCTCACTAAACATGTCCATACCTGATAATCTCAGTAAGTATTGATTTTCGCAGTTTTTGGGAAAAATATACAGTACCGGGCAACAAGATACACAAAACCGTGGTTTCTGTTGTTGACAATTTTTAGAGGTCTGGAGCGCGGCTATCAAGTGTCCGATAACTTTGAAAATGTTGGAGAGTGTGAAACAGGTCTTGATTGAGAACTTTGTATTTAGAGATTTTTTCGAAAGTTACTAGTTTTTTAGCTTTTTGCAATTTTTGGAATACACCTGTTTTTCTCGTTTTCAGTACAGAACGAACTAATTATATGATTCCGGTTACCAAATTGATATTATCGGGATAATAAAAAATATTGATTACAATTCTTCTTTTAGATTTTCAAAATACTGTTGCTTCAAAAAATTAAAGCTTGTTTTTGGGGTGGCTTTATGATGTTAGGCTTAAAATGTTGCTGACCAATGTTGCTCTAGGTTCTC</canonical>
            <polymorphic>AATGTGAGAATCCTTTGATATGACGATGTTCTCGTGCACTGCATTGAAACAGCGCATTACCAGAACTCCATATTCTATATTCAGTTTATCTTCGGTGAGTTTTTCATTTAGAATCATGAGTTATTGTCTTTATAATTTTTCTGGGACATGTTTTGAAATGGATATAATGTAAAAAACGATGTATGACCCAAATATAAACCTTAGACAGAAAAACAAACTACACTCTATAAGGTCTAATATAAAGTCATATTCCAGGAGTTCTGATTGTTTTGAAAATATCAATGAGGATTTTGCCAGATTAAGAAATAAAAAAAGTAACATGGAAAAAAAGAAATTCTTAAAATTCAGAAATTTGAAAAATAAATGTTTACAGTAGCTCTAGTTCCTTTCACTAGCATTTTGAAGAGTTAGTACGGTAATTCCGTAGCTTCTCATAAGTTTTTTGAACAAATAAGACACTGAAAACGCTATGGAAAAAATGTGAAAGTTTCCAGAAAACYTTTTTTTGTTTTTTCATGAATATTTTCTCACTAAACATGTCCATACCTGATAATCTCAGTAAGTATTGATTTTCGCAGTTTTTGGGAAAAATATACAGTACCGGGCAACAAGATACACAAAACCGTGGTTTCTGTTGTTGACAATTTTTAGAGGTCTGGAGCGCGGCTATCAAGTGTCCGATAACTTTGAAAATGTTGGAGAGTGTGAAACAGGTCTTGATTGAGAACTTTGTATTTAGAGATTTTTTCGAAAGTTACTAGTTTTTTAGCTTTTTGCAATTTTTGGAATACACCTGTTTTTCTCGTTTTCAGTACAGAACGAACTAATTATATGATTCCGGTTACCAAATTGATATTATCGGGATAATAAAAAATATTGATTACAATTCTTCTTTTAGATTTTCAAAATACTGTTGCTTCAAAAAATTAAAGCTTGTTTTTGGGGTGGCTTTATGATGTTAGGCTTAAAATGTTGCTGACCAATGTTGCTCTAGGTTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAAAATAAATGTTTACAGTAGC</pcr_primer_p1>
		<pcr_primer_p2>AAAACTGCGAAAATCAATACTTA</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAAAATAAATGTTTACAGTAGCTCTAGTTCCTTTCACTAGCATTTTGAAGAGTTAGTACGGTAATTCCGTAGCTTCTCATAAGTTTTTTGAACAAATAAGACACTGAAAACGCTATGGAAAAAATGTGAAAGTTTCCAGAAAACTTTTTTTTGTTTTTTCATGAATATTTTCTCACTAAACATGTCCATACCTGATAATCTCAGTAAGTATTGATTTTCGCAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAAAATAAATGTTTACAGTAGCTCTAGTTCCTTTCACTAGCATTTTGAAGAGTTAGTACGGTAATTCCGTAGCTTCTCATAAGTTTTTTGAACAAATAAGACACTGAAAACGCTATGGAAAAAATGTGAAAGTTTCCAGAAAACYTTTTTTTGTTTTTTCATGAATATTTTCTCACTAAACATGTCCATACCTGATAATCTCAGTAAGTATTGATTTTCGCAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38301</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>801945</contig_pos>
        <strand>+</strand>
        <context>TCAATCAGGG[A/G]AATTTTAACC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACAGGTGAACATTTGATTAGATTTTGGCTAGAACAAAAGTCAATCAGGG</left_flank>
        <right_flank>AATTTTAACCCTACATTTTTGAGAAATATGTGAGCAATCGGAAAATGTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCAATACTTTAAACGAAAACTATTATGACAATTGAGTTTCATATTTTTGAGCCTGTTTTGAATATTATTCACTTATTTTGGAAAATCTACGACAAATAAAAAAACTATAAAAATGGTCGAAAATCTGAAAAAAAATAGGAACTTATCATCTAAAATGAGCCCGAATAATACGATAGTTCTTAACCTTTTGTCAGAAACTTTTGAACGTTTTCAATTATTCTTAGCTGTTTTTAATCAATGAACGTTTTTGATAGGAAGAGTTTGTTTCAGCGAAAGATTGAAAATTGAACATTTCGAAATTTTGAAAAAATGTAATCAAATTCTCAAAATTTTACTTTTGAAGTATATTTTTACTTACGATAAGAAAAAGTGGTGTCACTTTTTTTTTAACTTCCTGCGTTTCTTATCTCTCAAAAAGCACCTGGTCGATACAGTGCAAAATGAACAGAACAGGTGAACATTTGATTAGATTTTGGCTAGAACAAAAGTCAATCAGGGGAATTTTAACCCTACATTTTTGAGAAATATGTGAGCAATCGGAAAATGTTCTCTCAAAGAGCATTTAGTTAAAAATTAAGTTTTTAATTAGTCAAAACAGTAAGCACTGTCTCATTGGACCAGTTTCGCTCAAGTAAATTACTGTGGATAACAAAGATTGTTTTACATATTCAAATTTTTATGTCACTAACAAATCAGTTATTCGGAAACTAAAATCAGTAAATCAGAAAATATCTTCCAGAAAAAATCAGAAAATGTCAAAGTCGTGAAGTGAGAAATAGTAAGAGATAAAACCTAAAATTAAAGTATTATGAACACAAGGAAGCCGAAATCTAATTTTCGAAGTTTTCTTACCAAATTTGGTTTGAACTGGAGAGAGCACTATGTTATGATAAACAAAAAAGTGTTTTAGAAGGCAAAATTCAATAAAATGGCTAGAAGTCTCAAAAATGGAGTCAAGAACAACACGGGAAAAACTCCGCGGCGCAAATAAAAATTAAA</canonical>
            <polymorphic>TGCAATACTTTAAACGAAAACTATTATGACAATTGAGTTTCATATTTTTGAGCCTGTTTTGAATATTATTCACTTATTTTGGAAAATCTACGACAAATAAAAAAACTATAAAAATGGTCGAAAATCTGAAAAAAAATAGGAACTTATCATCTAAAATGAGCCCGAATAATACGATAGTTCTTAACCTTTTGTCAGAAACTTTTGAACGTTTTCAATTATTCTTAGCTGTTTTTAATCAATGAACGTTTTTGATAGGAAGAGTTTGTTTCAGCGAAAGATTGAAAATTGAACATTTCGAAATTTTGAAAAAATGTAATCAAATTCTCAAAATTTTACTTTTGAAGTATATTTTTACTTACGATAAGAAAAAGTGGTGTCACTTTTTTTTTAACTTCCTGCGTTTCTTATCTCTCAAAAAGCACCTGGTCGATACAGTGCAAAATGAACAGAACAGGTGAACATTTGATTAGATTTTGGCTAGAACAAAAGTCAATCAGGGRAATTTTAACCCTACATTTTTGAGAAATATGTGAGCAATCGGAAAATGTTCTCTCAAAGAGCATTTAGTTAAAAATTAAGTTTTTAATTAGTCAAAACAGTAAGCACTGTCTCATTGGACCAGTTTCGCTCAAGTAAATTACTGTGGATAACAAAGATTGTTTTACATATTCAAATTTTTATGTCACTAACAAATCAGTTATTCGGAAACTAAAATCAGTAAATCAGAAAATATCTTCCAGAAAAAATCAGAAAATGTCAAAGTCGTGAAGTGAGAAATAGTAAGAGATAAAACCTAAAATTAAAGTATTATGAACACAAGGAAGCCGAAATCTAATTTTCGAAGTTTTCTTACCAAATTTGGTTTGAACTGGAGAGAGCACTATGTTATGATAAACAAAAAAGTGTTTTAGAAGGCAAAATTCAATAAAATGGCTAGAAGTCTCAAAAATGGAGTCAAGAACAACACGGGAAAAACTCCGCGGCGCAAATAAAAATTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>298 183 172 172 82 63 21 9</canonical_bands>
                <polymorphic_bands>344 298 183 82 63 21 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACGATAAGAAAAAGTGGTGTC</pcr_primer_p1>
		<pcr_primer_p2>AGACAGTGCTTACTGTTTTGACT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TTACGATAAGAAAAAGTGGTGTCACTTTTTTTTTAACTTCCTGCGTTTCTTATCTCTCAAAAAGCACCTGGTCGATACAGTGCAAAATGAACAGAACAGGTGAACATTTGATTAGATTTTGGCTAGAACAAAAGTCAATCAGGGGAATTTTAACCCTACATTTTTGAGAAATATGTGAGCAATCGGAAAATGTTCTCTCAAAGAGCATTTAGTTAAAAATTAAGTTTTTAATTAGTCAAAACAGTAAGCACTGTCT</canonical_amplicon>
		<polymorphic_amplicon>TTACGATAAGAAAAAGTGGTGTCACTTTTTTTTTAACTTCCTGCGTTTCTTATCTCTCAAAAAGCACCTGGTCGATACAGTGCAAAATGAACAGAACAGGTGAACATTTGATTAGATTTTGGCTAGAACAAAAGTCAATCAGGGRAATTTTAACCCTACATTTTTGAGAAATATGTGAGCAATCGGAAAATGTTCTCTCAAAGAGCATTTAGTTAAAAATTAAGTTTTTAATTAGTCAAAACAGTAAGCACTGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38302</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>804176</contig_pos>
        <strand></strand>
        <context>TTCAAAGTTA[T/C]ATGAATATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCGAAAAACAACTTTTTGAAGTCTCAAAACTTTCGAAAATTTCAAAGTTA</left_flank>
        <right_flank>ATGAATATTTAGAGGAAAAGTTAAAACAGAAGGGCTAGAATACTTTCCAA</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTATCACAATATCAGATCTATTTAATCAGTTCACAAATTTTTGATATCTTTCACAAGACCCCAGAAAAACAGGCTCGAAGTTCAAAGTTGATAGGGCCATTCTATTAGAGTGTTTACGCCAGTTTTTTTTTTCAAAATCATGATATATCTGATTTGACGAGTTGTGCATAACATTTTTTACTAAATATTGAAGTGATGAGCCGGAACCATGTGCCAAAATTTTAGACAGCTCGAACTTTTTGAAAATTCTGGATCCAAATCGAAAGTTGAGCAACGTTTTTGTATCAAAAGAAAGACGCAAATATGTATTTCATTTCATTTAACAGTGGCTGTTTGGTATCCTTTCAAAAGTTGTATTACCTACCTGAACTTTCTCCATTCCAAGGTTTTATGCAAATGAGAATGATTCAAAAGATTCGATTTGTAAAGATTGTCAAGTGTTCCTCGAAAAACAACTTTTTGAAGTCTCAAAACTTTCGAAAATTTCAAAGTTATATGAATATTTAGAGGAAAAGTTAAAACAGAAGGGCTAGAATACTTTCCAAGTGTTATTAATCTACCGTGAAACCTCTAGTAGAAGGGCGTCCCACTGTCAACATTGAGCTCCGTTATCTCGACTAATATCAAAGATATAAAAATATATGTTTCAACTGCAAAAATGTTAATTATAGTATCACCAATATTTTATCAGTTGACAGATTTTTGATATCTCTAATTGGAAGCGAGATAAACGCCTTAAAGTTGGAAGTTGAGGGGCTTTTCTGTAACAGGTTTTACGGTGTTCAAGACATTCCAACTGACGGACCGCAATACTTATTTTTAGGTACATTAACTATCCGTATCAAAAAAAATATTGATCTTGTTCCGCTTGAGACTCATAGATTACAAGCTGACGAAGGAAGCTTTCAATGCTGGAATCAATCAATTCAAATTTGGTGTTCAATCTTCCGGGAGAATTCGTTACAAAAACGGACTAAAGTACTAAGAACAACTCG</canonical>
            <polymorphic>ATTTTTTATCACAATATCAGATCTATTTAATCAGTTCACAAATTTTTGATATCTTTCACAAGACCCCAGAAAAACAGGCTCGAAGTTCAAAGTTGATAGGGCCATTCTATTAGAGTGTTTACGCCAGTTTTTTTTTTCAAAATCATGATATATCTGATTTGACGAGTTGTGCATAACATTTTTTACTAAATATTGAAGTGATGAGCCGGAACCATGTGCCAAAATTTTAGACAGCTCGAACTTTTTGAAAATTCTGGATCCAAATCGAAAGTTGAGCAACGTTTTTGTATCAAAAGAAAGACGCAAATATGTATTTCATTTCATTTAACAGTGGCTGTTTGGTATCCTTTCAAAAGTTGTATTACCTACCTGAACTTTCTCCATTCCAAGGTTTTATGCAAATGAGAATGATTCAAAAGATTCGATTTGTAAAGATTGTCAAGTGTTCCTCGAAAAACAACTTTTTGAAGTCTCAAAACTTTCGAAAATTTCAAAGTTAYATGAATATTTAGAGGAAAAGTTAAAACAGAAGGGCTAGAATACTTTCCAAGTGTTATTAATCTACCGTGAAACCTCTAGTAGAAGGGCGTCCCACTGTCAACATTGAGCTCCGTTATCTCGACTAATATCAAAGATATAAAAATATATGTTTCAACTGCAAAAATGTTAATTATAGTATCACCAATATTTTATCAGTTGACAGATTTTTGATATCTCTAATTGGAAGCGAGATAAACGCCTTAAAGTTGGAAGTTGAGGGGCTTTTCTGTAACAGGTTTTACGGTGTTCAAGACATTCCAACTGACGGACCGCAATACTTATTTTTAGGTACATTAACTATCCGTATCAAAAAAAATATTGATCTTGTTCCGCTTGAGACTCATAGATTACAAGCTGACGAAGGAAGCTTTCAATGCTGGAATCAATCAATTCAAATTTGGTGTTCAATCTTCCGGGAGAATTCGTTACAAAAACGGACTAAAGTACTAAGAACAACTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATTTCATTTCATTTAACAGTGG</pcr_primer_p1>
		<pcr_primer_p2>AATAACACTTGGAAAGTATTCTAGC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTATTTCATTTCATTTAACAGTGGCTGTTTGGTATCCTTTCAAAAGTTGTATTACCTACCTGAACTTTCTCCATTCCAAGGTTTTATGCAAATGAGAATGATTCAAAAGATTCGATTTGTAAAGATTGTCAAGTGTTCCTCGAAAAACAACTTTTTGAAGTCTCAAAACTTTCGAAAATTTCAAAGTTATATGAATATTTAGAGGAAAAGTTAAAACAGAAGGGCTAGAATACTTTCCAAGTGTTATT</canonical_amplicon>
		<polymorphic_amplicon>GTATTTCATTTCATTTAACAGTGGCTGTTTGGTATCCTTTCAAAAGTTGTATTACCTACCTGAACTTTCTCCATTCCAAGGTTTTATGCAAATGAGAATGATTCAAAAGATTCGATTTGTAAAGATTGTCAAGTGTTCCTCGAAAAACAACTTTTTGAAGTCTCAAAACTTTCGAAAATTTCAAAGTTAYATGAATATTTAGAGGAAAAGTTAAAACAGAAGGGCTAGAATACTTTCCAAGTGTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38303</snp_id>
        <super_contig>c012800671.Contig1</super_contig>
        <contig_pos>888319</contig_pos>
        <strand>+</strand>
        <context>AGGTACTTTT[G/T]AATTTTCTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTATTATTTTCAGATATGTGTAATTTTTGTGGCTAAAACCAGGTACTTTT</left_flank>
        <right_flank>AATTTTCTTCTATATTCTAATATGAAAATAGTTTTTTAGTAGCAGATATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCAAACATTGGTGATATTATCACAAATATTTTATGTATTAGTTTCCCACTTTCGAATATGTTTCATAGAAAATGAGATAAATGAGCTTTGAGAAACCTCAAAAACCTTCATTCCCTGGAGGGTTCTCTCAGAAAATCTGAATAAATTTCAATATCAAAATAGAAAAATTATATAAAGTGATTTCTAAAAATTTGTATTCCGATTAAAAATCCTGACTACTCAACGAACCCGAATTGACAGGAACTCCTATTTTGCAGAGTTGACTAAAAACTAAAAAGAGGAGCATTTACCGGAATATATTATTATTTCCATCTCGCTCTCTCTTTTTTTTCTATCATCCTCCTCAAGTCTTCCGCTTGTTTTTGAAATTCTGAAAAAGGAGCCTTCACTGGATCACGAAAAATAATTTTTCAGATTTCTTTTATAGTGACGGGAGTAAATTAGATGCTATTATTTTCAGATATGTGTAATTTTTGTGGCTAAAACCAGGTACTTTTTAATTTTCTTCTATATTCTAATATGAAAATAGTTTTTTAGTAGCAGATATCGAAAATCCCTTTCATGCTCTTTTTGTCAATTCCCAGCATTTGTTGTGGATTTTCATTTAAACATTATTGTCCACTCAATTCATATTAATTTCTGACAGACATAACCCTTTCATTCATAAAATGCGTTGCAGGTGCGCCAGTTCCTCCAGTTTCTCCTGTTGTCTATTTCTCCACATTTGTTTCACGCTCTCTTGTGTGAGCGCGCGCACACACATTCAAACAAGAGGAGGGTCTCGCAACGACTTGACAATAATAGAGAGGGAAATACGGTTAATCTAGTTGTCGATTTACGAGAAAAATAATTATTTTCGGGTTGAAACATTTTCTCATTTTTTTGTGAATAAAGTGGTAACCATTAATTCTTGTCTTATCTCCCTTCTCTCCATTTTATGTGTCCGCGCACATGTAGTCGTCTACAACGACACTCCGGAATAATGGTGGTGCGCATTG</canonical>
            <polymorphic>AATCAAACATTGGTGATATTATCACAAATATTTTATGTATTAGTTTCCCACTTTCGAATATGTTTCATAGAAAATGAGATAAATGAGCTTTGAGAAACCTCAAAAACCTTCATTCCCTGGAGGGTTCTCTCAGAAAATCTGAATAAATTTCAATATCAAAATAGAAAAATTATATAAAGTGATTTCTAAAAATTTGTATTCCGATTAAAAATCCTGACTACTCAACGAACCCGAATTGACAGGAACTCCTATTTTGCAGAGTTGACTAAAAACTAAAAAGAGGAGCATTTACCGGAATATATTATTATTTCCATCTCGCTCTCTCTTTTTTTTCTATCATCCTCCTCAAGTCTTCCGCTTGTTTTTGAAATTCTGAAAAAGGAGCCTTCACTGGATCACGAAAAATAATTTTTCAGATTTCTTTTATAGTGACGGGAGTAAATTAGATGCTATTATTTTCAGATATGTGTAATTTTTGTGGCTAAAACCAGGTACTTTTKAATTTTCTTCTATATTCTAATATGAAAATAGTTTTTTAGTAGCAGATATCGAAAATCCCTTTCATGCTCTTTTTGTCAATTCCCAGCATTTGTTGTGGATTTTCATTTAAACATTATTGTCCACTCAATTCATATTAATTTCTGACAGACATAACCCTTTCATTCATAAAATGCGTTGCAGGTGCGCCAGTTCCTCCAGTTTCTCCTGTTGTCTATTTCTCCACATTTGTTTCACGCTCTCTTGTGTGAGCGCGCGCACACACATTCAAACAAGAGGAGGGTCTCGCAACGACTTGACAATAATAGAGAGGGAAATACGGTTAATCTAGTTGTCGATTTACGAGAAAAATAATTATTTTCGGGTTGAAACATTTTCTCATTTTTTTGTGAATAAAGTGGTAACCATTAATTCTTGTCTTATCTCCCTTCTCTCCATTTTATGTGTCCGCGCACATGTAGTCGTCTACAACGACACTCCGGAATAATGGTGGTGCGCATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>294 205 186 108 94 85 28</canonical_bands>
                <polymorphic_bands>402 205 186 94 85 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTTTTATAGTGACGGGAGTAA</pcr_primer_p1>
		<pcr_primer_p2>TATGAATGAAAGGGTTATGTCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTTTTATAGTGACGGGAGTAAATTAGATGCTATTATTTTCAGATATGTGTAATTTTTGTGGCTAAAACCAGGTACTTTTTAATTTTCTTCTATATTCTAATATGAAAATAGTTTTTTAGTAGCAGATATCGAAAATCCCTTTCATGCTCTTTTTGTCAATTCCCAGCATTTGTTGTGGATTTTCATTTAAACATTATTGTCCACTCAATTCATATTAATTTCTGACAGACATAACCCTTTCATTCATA</canonical_amplicon>
		<polymorphic_amplicon>TTCTTTTATAGTGACGGGAGTAAATTAGATGCTATTATTTTCAGATATGTGTAATTTTTGTGGCTAAAACCAGGTACTTTTKAATTTTCTTCTATATTCTAATATGAAAATAGTTTTTTAGTAGCAGATATCGAAAATCCCTTTCATGCTCTTTTTGTCAATTCCCAGCATTTGTTGTGGATTTTCATTTAAACATTATTGTCCACTCAATTCATATTAATTTCTGACAGACATAACCCTTTCATTCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38304</snp_id>
        <super_contig>c012800883.Contig1</super_contig>
        <contig_pos>45651</contig_pos>
        <strand></strand>
        <context>ATTCTTTTTC[T/C]ATTTTTCTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAATTTTCCAATTTTTCGAAATTTATTTAAACAGTATTCCATTCTTTTTC</left_flank>
        <right_flank>ATTTTTCTAATTTTCCCCCATTGTTTTTTTTCTCTTTTTGCTTGTCAAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGATGGCCTAACTTTCGCAAGATGGGTTTTCTAGGCCACCTTGGTAAAATAGCCTGAAAATGGTCTCACATGCTTTTAGGGTGTTTTCTAGGCCATTTTATCATGATGGCCTAACTTTCGCAAGATGGGTTTTCTAGGCCACCATGGTAAAACGATCTAGAAATGGCCTCACATGCCCCTGTTGTGATTTCTAGGTCATTTTGACATGATGGCCTAACTTTTGCAAGATGGGTTTTCTAGGCCACCTTGGTAAAATAGCCTGAAAATGGTCTCACATGCTTTTAGGGTGTTTTCTAGGCCATTTTATCATGATGGCCTAACTTTCGCAAGATGGGTTTTCTAGGCCACCTTGGTAAAACAGCTTGAAAATGACAAAAAATCACAAATTGTAAACAATTATGAATCATATTTTTTCCGAAAAATTCGATTAAAAAGAATTTCGAAACAAAATTTTCCAATTTTTCGAAATTTATTTAAACAGTATTCCATTCTTTTTCTATTTTTCTAATTTTCCCCCATTGTTTTTTTTCTCTTTTTGCTTGTCAAATTTTCCTAAATTTGAAAAAAAAGCGAAATTTCAGAAAAATGAAACCATTGCTCATTTTTCTCGTTATTGCAATTTTTGCAATTCAAACTACAGTAACCCAAACGACTGGCAAATCAAAAACTTCGAATGTTAATGAGGTAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAACTTCCAGGTCCCATTCTACGTCATGGTCCTTATGGTATTCATCTTCTTCCTCTTGAGCTGTTTGATTTCCGGATTACTGTACATTTGCATGCTTTGCATTGAACAATATAGGGAAAATCGTTTTGTGGAAAATCCAGAAGAGCAAAGTTCCATGGAAATGTTTACTCCAATGCGCAGTCCGATTCCAAATCCATCGTTCAACAAAATTCATCCTGTTTAATTTCTTATTCTTTTTGTT</canonical>
            <polymorphic>AGTGATGGCCTAACTTTCGCAAGATGGGTTTTCTAGGCCACCTTGGTAAAATAGCCTGAAAATGGTCTCACATGCTTTTAGGGTGTTTTCTAGGCCATTTTATCATGATGGCCTAACTTTCGCAAGATGGGTTTTCTAGGCCACCATGGTAAAACGATCTAGAAATGGCCTCACATGCCCCTGTTGTGATTTCTAGGTCATTTTGACATGATGGCCTAACTTTTGCAAGATGGGTTTTCTAGGCCACCTTGGTAAAATAGCCTGAAAATGGTCTCACATGCTTTTAGGGTGTTTTCTAGGCCATTTTATCATGATGGCCTAACTTTCGCAAGATGGGTTTTCTAGGCCACCTTGGTAAAACAGCTTGAAAATGACAAAAAATCACAAATTGTAAACAATTATGAATCATATTTTTTCCGAAAAATTCGATTAAAAAGAATTTCGAAACAAAATTTTCCAATTTTTCGAAATTTATTTAAACAGTATTCCATTCTTTTTCYATTTTTCTAATTTTCCCCCATTGTTTTTTTTCTCTTTTTGCTTGTCAAATTTTCCTAAATTTGAAAAAAAAGCGAAATTTCAGAAAAATGAAACCATTGCTCATTTTTCTCGTTATTGCAATTTTTGCAATTCAAACTACAGTAACCCAAACGACTGGCAAATCAAAAACTTCGAATGTTAATGAGGTAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAAATTCAAAACTTCCAGGTCCCATTCTACGTCATGGTCCTTATGGTATTCATCTTCTTCCTCTTGAGCTGTTTGATTTCCGGATTACTGTACATTTGCATGCTTTGCATTGAACAATATAGGGAAAATCGTTTTGTGGAAAATCCAGAAGAGCAAAGTTCCATGGAAATGTTTACTCCAATGCGCAGTCCGATTCCAAATCCATCGTTCAACAAAATTCATCCTGTTTAATTTCTTATTCTTTTTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTAAAAAGAATTTCGAAACAA</pcr_primer_p1>
		<pcr_primer_p2>GAAGTTTTTGATTTGCCAGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GATTAAAAAGAATTTCGAAACAAAATTTTCCAATTTTTCGAAATTTATTTAAACAGTATTCCATTCTTTTTCTATTTTTCTAATTTTCCCCCATTGTTTTTTTTCTCTTTTTGCTTGTCAAATTTTCCTAAATTTGAAAAAAAAGCGAAATTTCAGAAAAATGAAACCATTGCTCATTTTTCTCGTTATTGCAATTTTTGCAATTCAAACTACAGTAACCCAAACGACTGGCAAATCAAAAACTTC</canonical_amplicon>
		<polymorphic_amplicon>GATTAAAAAGAATTTCGAAACAAAATTTTCCAATTTTTCGAAATTTATTTAAACAGTATTCCATTCTTTTTCYATTTTTCTAATTTTCCCCCATTGTTTTTTTTCTCTTTTTGCTTGTCAAATTTTCCTAAATTTGAAAAAAAAGCGAAATTTCAGAAAAATGAAACCATTGCTCATTTTTCTCGTTATTGCAATTTTTGCAATTCAAACTACAGTAACCCAAACGACTGGCAAATCAAAAACTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38305</snp_id>
        <super_contig>c012800883.Contig1</super_contig>
        <contig_pos>47244</contig_pos>
        <strand>+</strand>
        <context>TTTTTGGATA[C/T]GATTTCGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTATTTTTTCGAAATCATAATCGATTTTTATTGATTTCATTTTTGGATA</left_flank>
        <right_flank>GATTTCGATTCCAGAATTTTGTCCTGGAGGCTGTGGGACGTTTGGAGGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTGCGCGAATTTCAAAATTTCTCTGGAAAATTCTGGAGAAACTCCCAGAACTCTCAATTTTCAAAGTTAAAATTTTCAAAAAATCCGGGTCTATAAAAGCGAAAATGTTCAAAATTTCAGCGGAAATTTCTGAGGAATTTTCGAAAAACAATTCCAATTTTTGAGTTTTCAAAAAACTATTTTCGGGGAATTTCAGATTTTCAGACAAATTTAAAGAAAAAAATTTCAAGTGGAATTTTTTGAAATTTTAAAAAATTAATTACTATTTTTTGGAATTCATATTCAAAAACTTCCTCGCGTTTTTGATTTTCAAAATTTTGAAATTTTTGAATTTTACATCCGGAATTAATCGATTTTTTGTGAATTTTAAAAAATTTCCAAATTTCTGAAACCCGCGAATCTTGAAATTCTAAAAGTAGGAATTTGAAGCCTTCCGATAATCCTGGACCTATTTTTTCGAAATCATAATCGATTTTTATTGATTTCATTTTTGGATATGATTTCGATTCCAGAATTTTGTCCTGGAGGCTGTGGGACGTTTGGAGGAGGATTTGGCTGAAAATTTCAGATTTTTTGAGTGATTTTTCATCATTTTTGGTCCATTTTTTTAAAGTTTTTTATCCTTTTTTAGTTTATATCCATTCGGGATTTTGGGATTTCCCGGATTACCGGACTTCTGGGTTTCTGGGTTTCTGGATTTCCGGATTTCCGGATTTCAGGATTTTCGAATTTCTGGATTTCTTTATTTCCAGATTTCCGGATTTTCGGATTTCCGGATTTTTGGATTTCCGGATTACCGGACTTCTGGGTTTCTGGATTTCCGGATTTCCGGATTCCAGGATTCCGGATTTCCAGTTTTAAAAGGATAAAAACTTTTTGAGCTAATTTTCAAAAATTCTGGCCTTTTTTCCTGATTTTTGGATTACTTTTAGGGTTTTAAAACTTTTTTTTCAGGATTTTTGGTCCATTTTTCATGAATTTTGGGCTGAAAAAAATGA</canonical>
            <polymorphic>CTTTGCGCGAATTTCAAAATTTCTCTGGAAAATTCTGGAGAAACTCCCAGAACTCTCAATTTTCAAAGTTAAAATTTTCAAAAAATCCGGGTCTATAAAAGCGAAAATGTTCAAAATTTCAGCGGAAATTTCTGAGGAATTTTCGAAAAACAATTCCAATTTTTGAGTTTTCAAAAAACTATTTTCGGGGAATTTCAGATTTTCAGACAAATTTAAAGAAAAAAATTTCAAGTGGAATTTTTTGAAATTTTAAAAAATTAATTACTATTTTTTGGAATTCATATTCAAAAACTTCCTCGCGTTTTTGATTTTCAAAATTTTGAAATTTTTGAATTTTACATCCGGAATTAATCGATTTTTTGTGAATTTTAAAAAATTTCCAAATTTCTGAAACCCGCGAATCTTGAAATTCTAAAAGTAGGAATTTGAAGCCTTCCGATAATCCTGGACCTATTTTTTCGAAATCATAATCGATTTTTATTGATTTCATTTTTGGATAYGATTTCGATTCCAGAATTTTGTCCTGGAGGCTGTGGGACGTTTGGAGGAGGATTTGGCTGAAAATTTCAGATTTTTTGAGTGATTTTTCATCATTTTTGGTCCATTTTTTTAAAGTTTTTTATCCTTTTTTAGTTTATATCCATTCGGGATTTTGGGATTTCCCGGATTACCGGACTTCTGGGTTTCTGGGTTTCTGGATTTCCGGATTTCCGGATTTCAGGATTTTCGAATTTCTGGATTTCTTTATTTCCAGATTTCCGGATTTTCGGATTTCCGGATTTTTGGATTTCCGGATTACCGGACTTCTGGGTTTCTGGATTTCCGGATTTCCGGATTCCAGGATTCCGGATTTCCAGTTTTAAAAGGATAAAAACTTTTTGAGCTAATTTTCAAAAATTCTGGCCTTTTTTCCTGATTTTTGGATTACTTTTAGGGTTTTAAAACTTTTTTTTCAGGATTTTTGGTCCATTTTTCATGAATTTTGGGCTGAAAAAAATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATTCTAAAAGTAGGAATTTGAA</pcr_primer_p1>
		<pcr_primer_p2>AAATCCCGAATGGATATAAACTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAAATTCTAAAAGTAGGAATTTGAAGCCTTCCGATAATCCTGGACCTATTTTTTCGAAATCATAATCGATTTTTATTGATTTCATTTTTGGATATGATTTCGATTCCAGAATTTTGTCCTGGAGGCTGTGGGACGTTTGGAGGAGGATTTGGCTGAAAATTTCAGATTTTTTGAGTGATTTTTCATCATTTTTGGTCCATTTTTTTAAAGTTTTTTATCCTTTTTTAGTTTATATCCATTCGGGATTT</canonical_amplicon>
		<polymorphic_amplicon>GAAATTCTAAAAGTAGGAATTTGAAGCCTTCCGATAATCCTGGACCTATTTTTTCGAAATCATAATCGATTTTTATTGATTTCATTTTTGGATAYGATTTCGATTCCAGAATTTTGTCCTGGAGGCTGTGGGACGTTTGGAGGAGGATTTGGCTGAAAATTTCAGATTTTTTGAGTGATTTTTCATCATTTTTGGTCCATTTTTTTAAAGTTTTTTATCCTTTTTTAGTTTATATCCATTCGGGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38306</snp_id>
        <super_contig>c012800883.Contig1</super_contig>
        <contig_pos>47399</contig_pos>
        <strand>+</strand>
        <context>TCGGGATTTT[C/G]GGATTTCCCG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTTTTAAAGTTTTTTATCCTTTTTTAGTTTATATCCATTCGGGATTTT</left_flank>
        <right_flank>GGATTTCCCGGATTACCGGACTTCTGGGTTTCTGGGTTTCTGGATTTCCG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAATTTTTGAGTTTTCAAAAAACTATTTTCGGGGAATTTCAGATTTTCAGACAAATTTAAAGAAAAAAATTTCAAGTGGAATTTTTTGAAATTTTAAAAAATTAATTACTATTTTTTGGAATTCATATTCAAAAACTTCCTCGCGTTTTTGATTTTCAAAATTTTGAAATTTTTGAATTTTACATCCGGAATTAATCGATTTTTTGTGAATTTTAAAAAATTTCCAAATTTCTGAAACCCGCGAATCTTGAAATTCTAAAAGTAGGAATTTGAAGCCTTCCGATAATCCTGGACCTATTTTTTCGAAATCATAATCGATTTTTATTGATTTCATTTTTGGATATGATTTCGATTCCAGAATTTTGTCCTGGAGGCTGTGGGACGTTTGGAGGAGGATTTGGCTGAAAATTTCAGATTTTTTGAGTGATTTTTCATCATTTTTGGTCCATTTTTTTAAAGTTTTTTATCCTTTTTTAGTTTATATCCATTCGGGATTTTGGGATTTCCCGGATTACCGGACTTCTGGGTTTCTGGGTTTCTGGATTTCCGGATTTCCGGATTTCAGGATTTTCGAATTTCTGGATTTCTTTATTTCCAGATTTCCGGATTTTCGGATTTCCGGATTTTTGGATTTCCGGATTACCGGACTTCTGGGTTTCTGGATTTCCGGATTTCCGGATTCCAGGATTCCGGATTTCCAGTTTTAAAAGGATAAAAACTTTTTGAGCTAATTTTCAAAAATTCTGGCCTTTTTTCCTGATTTTTGGATTACTTTTAGGGTTTTAAAACTTTTTTTTCAGGATTTTTGGTCCATTTTTCATGAATTTTGGGCTGAAAAAAATGATTTACTGCTCAGAAAAAGTGCAAAGATCCATAACTTTTCTCATTGGAATCTCCGGCAAATCGAGAAGATTTTTGGGTTTTTTGGTCATTGTGAACCTGAAAATCATAAAAATTAAAAAATTCGATAAATCAAATATTCAGAAATTCAGAAATTCT</canonical>
            <polymorphic>CCAATTTTTGAGTTTTCAAAAAACTATTTTCGGGGAATTTCAGATTTTCAGACAAATTTAAAGAAAAAAATTTCAAGTGGAATTTTTTGAAATTTTAAAAAATTAATTACTATTTTTTGGAATTCATATTCAAAAACTTCCTCGCGTTTTTGATTTTCAAAATTTTGAAATTTTTGAATTTTACATCCGGAATTAATCGATTTTTTGTGAATTTTAAAAAATTTCCAAATTTCTGAAACCCGCGAATCTTGAAATTCTAAAAGTAGGAATTTGAAGCCTTCCGATAATCCTGGACCTATTTTTTCGAAATCATAATCGATTTTTATTGATTTCATTTTTGGATATGATTTCGATTCCAGAATTTTGTCCTGGAGGCTGTGGGACGTTTGGAGGAGGATTTGGCTGAAAATTTCAGATTTTTTGAGTGATTTTTCATCATTTTTGGTCCATTTTTTTAAAGTTTTTTATCCTTTTTTAGTTTATATCCATTCGGGATTTTSGGATTTCCCGGATTACCGGACTTCTGGGTTTCTGGGTTTCTGGATTTCCGGATTTCCGGATTTCAGGATTTTCGAATTTCTGGATTTCTTTATTTCCAGATTTCCGGATTTTCGGATTTCCGGATTTTTGGATTTCCGGATTACCGGACTTCTGGGTTTCTGGATTTCCGGATTTCCGGATTCCAGGATTCCGGATTTCCAGTTTTAAAAGGATAAAAACTTTTTGAGCTAATTTTCAAAAATTCTGGCCTTTTTTCCTGATTTTTGGATTACTTTTAGGGTTTTAAAACTTTTTTTTCAGGATTTTTGGTCCATTTTTCATGAATTTTGGGCTGAAAAAAATGATTTACTGCTCAGAAAAAGTGCAAAGATCCATAACTTTTCTCATTGGAATCTCCGGCAAATCGAGAAGATTTTTGGGTTTTTTGGTCATTGTGAACCTGAAAATCATAAAAATTAAAAAATTCGATAAATCAAATATTCAGAAATTCAGAAATTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCATTTTTGGTCCATTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTATCCTTTTAAAACTGGAAATC</pcr_primer_p2>
		<pcr_amplicon_size>284</pcr_amplicon_size>
		<canonical_amplicon>CATCATTTTTGGTCCATTTTTTTAAAGTTTTTTATCCTTTTTTAGTTTATATCCATTCGGGATTTTGGGATTTCCCGGATTACCGGACTTCTGGGTTTCTGGGTTTCTGGATTTCCGGATTTCCGGATTTCAGGATTTTCGAATTTCTGGATTTCTTTATTTCCAGATTTCCGGATTTTCGGATTTCCGGATTTTTGGATTTCCGGATTACCGGACTTCTGGGTTTCTGGATTTCCGGATTTCCGGATTCCAGGATTCCGGATTTCCAGTTTTAAAAGGATAAA</canonical_amplicon>
		<polymorphic_amplicon>CATCATTTTTGGTCCATTTTTTTAAAGTTTTTTATCCTTTTTTAGTTTATATCCATTCGGGATTTTSGGATTTCCCGGATTACCGGACTTCTGGGTTTCTGGGTTTCTGGATTTCCGGATTTCCGGATTTCAGGATTTTCGAATTTCTGGATTTCTTTATTTCCAGATTTCCGGATTTTCGGATTTCCGGATTTTTGGATTTCCGGATTACCGGACTTCTGGGTTTCTGGATTTCCGGATTTCCGGATTCCAGGATTCCGGATTTCCAGTTTTAAAAGGATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38307</snp_id>
        <super_contig>c012800883.Contig1</super_contig>
        <contig_pos>47672</contig_pos>
        <strand></strand>
        <context>TTTTGGATTA[C/T]TTTTAGGGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGAGCTAATTTTCAAAAATTCTGGCCTTTTTTCCTGATTTTTGGATTA</left_flank>
        <right_flank>TTTTAGGGTTTTAAAACTTTTTTTTCAGGATTTTTGGTCCATTTTTCATG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCCTTCCGATAATCCTGGACCTATTTTTTCGAAATCATAATCGATTTTTATTGATTTCATTTTTGGATATGATTTCGATTCCAGAATTTTGTCCTGGAGGCTGTGGGACGTTTGGAGGAGGATTTGGCTGAAAATTTCAGATTTTTTGAGTGATTTTTCATCATTTTTGGTCCATTTTTTTAAAGTTTTTTATCCTTTTTTAGTTTATATCCATTCGGGATTTTGGGATTTCCCGGATTACCGGACTTCTGGGTTTCTGGGTTTCTGGATTTCCGGATTTCCGGATTTCAGGATTTTCGAATTTCTGGATTTCTTTATTTCCAGATTTCCGGATTTTCGGATTTCCGGATTTTTGGATTTCCGGATTACCGGACTTCTGGGTTTCTGGATTTCCGGATTTCCGGATTCCAGGATTCCGGATTTCCAGTTTTAAAAGGATAAAAACTTTTTGAGCTAATTTTCAAAAATTCTGGCCTTTTTTCCTGATTTTTGGATTACTTTTAGGGTTTTAAAACTTTTTTTTCAGGATTTTTGGTCCATTTTTCATGAATTTTGGGCTGAAAAAAATGATTTACTGCTCAGAAAAAGTGCAAAGATCCATAACTTTTCTCATTGGAATCTCCGGCAAATCGAGAAGATTTTTGGGTTTTTTGGTCATTGTGAACCTGAAAATCATAAAAATTAAAAAATTCGATAAATCAAATATTCAGAAATTCAGAAATTCTAAAAAATTTCGAAATTTTTTGCAGAAAAATTACAAAAATTGGAAAAAAACGTCCAAATTTTTTTCAAATCTCCCTTGAGATGCATGACGTCTTCATCGTCTTCTGACACACAAGATTTATACTTTCTCTTATTTCTGAACATCTCTGCGTCCTCTCAATTTCTTACACTCTCTTGTTTCTTCTTTCTTCGTCTCTCCAACTTGGCTCCAGCCGAAAATTGATGTGGAGCAGCGGTGAGTGGGGCTCAATTCCCTTATTTTTTGACTTGGGCAG</canonical>
            <polymorphic>AAGCCTTCCGATAATCCTGGACCTATTTTTTCGAAATCATAATCGATTTTTATTGATTTCATTTTTGGATATGATTTCGATTCCAGAATTTTGTCCTGGAGGCTGTGGGACGTTTGGAGGAGGATTTGGCTGAAAATTTCAGATTTTTTGAGTGATTTTTCATCATTTTTGGTCCATTTTTTTAAAGTTTTTTATCCTTTTTTAGTTTATATCCATTCGGGATTTTGGGATTTCCCGGATTACCGGACTTCTGGGTTTCTGGGTTTCTGGATTTCCGGATTTCCGGATTTCAGGATTTTCGAATTTCTGGATTTCTTTATTTCCAGATTTCCGGATTTTCGGATTTCCGGATTTTTGGATTTCCGGATTACCGGACTTCTGGGTTTCTGGATTTCCGGATTTCCGGATTCCAGGATTCCGGATTTCCAGTTTTAAAAGGATAAAAACTTTTTGAGCTAATTTTCAAAAATTCTGGCCTTTTTTCCTGATTTTTGGATTAYTTTTAGGGTTTTAAAACTTTTTTTTCAGGATTTTTGGTCCATTTTTCATGAATTTTGGGCTGAAAAAAATGATTTACTGCTCAGAAAAAGTGCAAAGATCCATAACTTTTCTCATTGGAATCTCCGGCAAATCGAGAAGATTTTTGGGTTTTTTGGTCATTGTGAACCTGAAAATCATAAAAATTAAAAAATTCGATAAATCAAATATTCAGAAATTCAGAAATTCTAAAAAATTTCGAAATTTTTTGCAGAAAAATTACAAAAATTGGAAAAAAACGTCCAAATTTTTTTCAAATCTCCCTTGAGATGCATGACGTCTTCATCGTCTTCTGACACACAAGATTTATACTTTCTCTTATTTCTGAACATCTCTGCGTCCTCTCAATTTCTTACACTCTCTTGTTTCTTCTTTCTTCGTCTCTCCAACTTGGCTCCAGCCGAAAATTGATGTGGAGCAGCGGTGAGTGGGGCTCAATTCCCTTATTTTTTGACTTGGGCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTTTTTGAGCTAATTTTCA</pcr_primer_p1>
		<pcr_primer_p2>AATTTTTATGATTTTCAGGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAAACTTTTTGAGCTAATTTTCAAAAATTCTGGCCTTTTTTCCTGATTTTTGGATTACTTTTAGGGTTTTAAAACTTTTTTTTCAGGATTTTTGGTCCATTTTTCATGAATTTTGGGCTGAAAAAAATGATTTACTGCTCAGAAAAAGTGCAAAGATCCATAACTTTTCTCATTGGAATCTCCGGCAAATCGAGAAGATTTTTGGGTTTTTTGGTCATTGTGAACCTGAAAATCATAAAAATT</canonical_amplicon>
		<polymorphic_amplicon>AAAACTTTTTGAGCTAATTTTCAAAAATTCTGGCCTTTTTTCCTGATTTTTGGATTAYTTTTAGGGTTTTAAAACTTTTTTTTCAGGATTTTTGGTCCATTTTTCATGAATTTTGGGCTGAAAAAAATGATTTACTGCTCAGAAAAAGTGCAAAGATCCATAACTTTTCTCATTGGAATCTCCGGCAAATCGAGAAGATTTTTGGGTTTTTTGGTCATTGTGAACCTGAAAATCATAAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38308</snp_id>
        <super_contig>c012800957.Contig1</super_contig>
        <contig_pos>69184</contig_pos>
        <strand>+</strand>
        <context>CGTATTTATT[C/T]AAACGTTTCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGGATTTTTAAATCCGTAAATTTCACGTTTCATGGATTCCGTATTTATT</left_flank>
        <right_flank>AAACGTTTCGGGATTACAACAAGAGAGACACAGCTCTTCCTTTTCCCTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGGGGCTTCCTCACCAGGGCTGGGATTTTAAGTTTACGGTTTTTACGGATTTCACGGCATTTTGAAATAGCCGTAATATTTTACGGACTCCCGTAAAATTGTATCCTTAAAATCCGTAAAAACCGTAAAATTAATAAACCGACTGTTTTTGGCAAAAAAAGAATATTATTTTAAGTTAGCCACTATTTTAAGCATGTAACTTTCTGAGATTTCAATGTAAAAATTTGGAAAAATTGTTTTTTCCGAGGTTTTTGAAAAGTTTACAGAACTATTTGGAAAATTGAATTTTGAGATTTTTGATAAAAGTGTGACAAAGCATAATTTTTAAGTTATTGAGTTGAAATTCATTAGTTATTGAGTTGAAAATTACATACCTGAAATAGCGAAAAAATTTGAAAAAATAGGGTATGCTTGCCAAAAACAGTAATTTGAGAAATTTTATGGTTTTACGGATTTTTAAATCCGTAAATTTCACGTTTCATGGATTCCGTATTTATTTAAACGTTTCGGGATTACAACAAGAGAGACACAGCTCTTCCTTTTCCCTCTTCTCGCCATTCAAGCAACTTTATTTATCTGAATCCTCGTCTTCTTTCTGCTTCGGAAAGCAGACCTTTTATCACTCCACTGGTAGATCAAACCTTTCTTGAATATTAGGGGAATATTTTTCAGAAAGCATGCGCTCCACAGCACTGGTAAAATGGCTGTTTTTAAGTCCTGGAAACCTCGTCCCCCGCGACTTTTAGCGGGGGCGGGCAGCGGTATTCGAATCATAAAACCATTTTTTGATCTATTTTCTTCAATAAAACTTTATTTCCGACGAAAAACTGTGAAAATAAAAGTTTTATTAAAAAAAAATAGATCAAAAAATGGTTTTAAATTTCAAATACCGCCGCCCGTCCCCGCCAAAAGTCGCGGGGGATTAGGTTTCCAGGACTTAAAAACTCTGTCATTTTAGCAGTGTGGTGGAGCGCATGCTTCCTGAAAAATATTCCCCTA</canonical>
            <polymorphic>GTGGGGCTTCCTCACCAGGGCTGGGATTTTAAGTTTACGGTTTTTACGGATTTCACGGCATTTTGAAATAGCCGTAATATTTTACGGACTCCCGTAAAATTGTATCCTTAAAATCCGTAAAAACCGTAAAATTAATAAACCGACTGTTTTTGGCAAAAAAAGAATATTATTTTAAGTTAGCCACTATTTTAAGCATGTAACTTTCTGAGATTTCAATGTAAAAATTTGGAAAAATTGTTTTTTCCGAGGTTTTTGAAAAGTTTACAGAACTATTTGGAAAATTGAATTTTGAGATTTTTGATAAAAGTGTGACAAAGCATAATTTTTAAGTTATTGAGTTGAAATTCATTAGTTATTGAGTTGAAAATTACATACCTGAAATAGCGAAAAAATTTGAAAAAATAGGGTATGCTTGCCAAAAACAGTAATTTGAGAAATTTTATGGTTTTACGGATTTTTAAATCCGTAAATTTCACGTTTCATGGATTCCGTATTTATTYAAACGTTTCGGGATTACAACAAGAGAGACACAGCTCTTCCTTTTCCCTCTTCTCGCCATTCAAGCAACTTTATTTATCTGAATCCTCGTCTTCTTTCTGCTTCGGAAAGCAGACCTTTTATCACTCCACTGGTAGATCAAACCTTTCTTGAATATTAGGGGAATATTTTTCAGAAAGCATGCGCTCCACAGCACTGGTAAAATGGCTGTTTTTAAGTCCTGGAAACCTCGTCCCCCGCGACTTTTAGCGGGGGCGGGCAGCGGTATTCGAATCATAAAACCATTTTTTGATCTATTTTCTTCAATAAAACTTTATTTCCGACGAAAAACTGTGAAAATAAAAGTTTTATTAAAAAAAAATAGATCAAAAAATGGTTTTAAATTTCAAATACCGCCGCCCGTCCCCGCCAAAAGTCGCGGGGGATTAGGTTTCCAGGACTTAAAAACTCTGTCATTTTAGCAGTGTGGTGGAGCGCATGCTTCCTGAAAAATATTCCCCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>459 378 122 41</canonical_bands>
                <polymorphic_bands>459 419 122</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>213 137 137 132 79 62 61 41 40 29 28 24 17</canonical_bands>
                <polymorphic_bands>254 137 137 132 79 62 61 40 29 28 24 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAGAAATTTTATGGTTTTACG</pcr_primer_p1>
		<pcr_primer_p2>TTTCTGAAAAATATTCCCCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTGAGAAATTTTATGGTTTTACGGATTTTTAAATCCGTAAATTTCACGTTTCATGGATTCCGTATTTATTTAAACGTTTCGGGATTACAACAAGAGAGACACAGCTCTTCCTTTTCCCTCTTCTCGCCATTCAAGCAACTTTATTTATCTGAATCCTCGTCTTCTTTCTGCTTCGGAAAGCAGACCTTTTATCACTCCACTGGTAGATCAAACCTTTCTTGAATATTAGGGGAATATTTTTCAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TTGAGAAATTTTATGGTTTTACGGATTTTTAAATCCGTAAATTTCACGTTTCATGGATTCCGTATTTATTYAAACGTTTCGGGATTACAACAAGAGAGACACAGCTCTTCCTTTTCCCTCTTCTCGCCATTCAAGCAACTTTATTTATCTGAATCCTCGTCTTCTTTCTGCTTCGGAAAGCAGACCTTTTATCACTCCACTGGTAGATCAAACCTTTCTTGAATATTAGGGGAATATTTTTCAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38309</snp_id>
        <super_contig>c012800957.Contig1</super_contig>
        <contig_pos>71464</contig_pos>
        <strand>+</strand>
        <context>GACGCCGACA[A/G]ATCTCTTCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTGCAGACAAAGCCAGTGGTCGTCTTGGCTTATCTCCAGACGCCGACA</left_flank>
        <right_flank>ATCTCTTCTTCTGAATGCACCCATTTTCACGGATACCATCAATTCGTCCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCAACGGGCAGCAGAACGCTGAACAATTGTTTGCAAACCTGTTATTGGCTATCAATGAGGAACAAGAGATTCCATTCAAATCGGCTCAAGAGTTAGCTGATTTTTGCGATTCCATGCCGCTAAACTTCCGAAAGAGGCAAAGCTCTATCGAAATACGGGAGTTCAAGGGCGTCGTCTCATTCAGGAGTTGAAGAGGAAGTTGACGAGAGGAGATGTGATTGATTGCGATAGCCTGGATCAGATGTGAGCTTAAATTTCTTTCTGTCTTGAAGACTTAATTTTCCAGTTTTGAAAACTTCCGTAAGACGATCCACGTGGATGAAGAGTTGAAAAACTTTACCGAACAAGAAGCCCAGTTGGACTACTCCTCGCTGTTTTATATTTCAAAAACTATTCCTGGCTTCGTCTATGGTGAGCGATTAGTGCTCTATTTATATTTTTTAAAAAACATTGCAGACAAAGCCAGTGGTCGTCTTGGCTTATCTCCAGACGCCGACAGATCTCTTCTTCTGAATGCACCCATTTTCACGGATACCATCAATTCGTCCCACCCACTGAAACTGGACCTTTCTCGCACTGTAGACGCCTGCGCGATCAATGCCTGTACCACTTATCCGGACCGTCAACAGGTACTAAAATTGGACATTTTCTTATTCTATACTCGTTTTCTTATCAGTTCTATTTTGCCGATGAGCATCTGCGCGGCGTCAGATCAGCAATGTTCTGGAAGAAGCCATCGAACAGAACCAGCGTTATGGAATCTAACTTCGTGAGTTTGATTTTGCATTTTTTACATTAGAAAGGGTCTTTCAGACGAGCATCCACAGTTGCATTTCACCCAATAATCCGAGACTTCAAGTTGAAACATTTCGGATTGAGCCGACGAAACTGTGTTTGGTGGATGCCGATTTCGAGAGAGCCAAGGAGAACATTGACAAACGAAAGTCGCAGAGTTTTGAGAAATTCTTTGCTGTATATGGGAACCTGAACAAGGAGGAA</canonical>
            <polymorphic>GTCAACGGGCAGCAGAACGCTGAACAATTGTTTGCAAACCTGTTATTGGCTATCAATGAGGAACAAGAGATTCCATTCAAATCGGCTCAAGAGTTAGCTGATTTTTGCGATTCCATGCCGCTAAACTTCCGAAAGAGGCAAAGCTCTATCGAAATACGGGAGTTCAAGGGCGTCGTCTCATTCAGGAGTTGAAGAGGAAGTTGACGAGAGGAGATGTGATTGATTGCGATAGCCTGGATCAGATGTGAGCTTAAATTTCTTTCTGTCTTGAAGACTTAATTTTCCAGTTTTGAAAACTTCCGTAAGACGATCCACGTGGATGAAGAGTTGAAAAACTTTACCGAACAAGAAGCCCAGTTGGACTACTCCTCGCTGTTTTATATTTCAAAAACTATTCCTGGCTTCGTCTATGGTGAGCGATTAGTGCTCTATTTATATTTTTTAAAAAACATTGCAGACAAAGCCAGTGGTCGTCTTGGCTTATCTCCAGACGCCGACARATCTCTTCTTCTGAATGCACCCATTTTCACGGATACCATCAATTCGTCCCACCCACTGAAACTGGACCTTTCTCGCACTGTAGACGCCTGCGCGATCAATGCCTGTACCACTTATCCGGACCGTCAACAGGTACTAAAATTGGACATTTTCTTATTCTATACTCGTTTTCTTATCAGTTCTATTTTGCCGATGAGCATCTGCGCGGCGTCAGATCAGCAATGTTCTGGAAGAAGCCATCGAACAGAACCAGCGTTATGGAATCTAACTTCGTGAGTTTGATTTTGCATTTTTTACATTAGAAAGGGTCTTTCAGACGAGCATCCACAGTTGCATTTCACCCAATAATCCGAGACTTCAAGTTGAAACATTTCGGATTGAGCCGACGAAACTGTGTTTGGTGGATGCCGATTTCGAGAGAGCCAAGGAGAACATTGACAAACGAAAGTCGCAGAGTTTTGAGAAATTCTTTGCTGTATATGGGAACCTGAACAAGGAGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>289 236 191 118 94 72</canonical_bands>
                <polymorphic_bands>289 285 236 118 72</polymorphic_bands>
            </assay>
            <assay>
                <site>AGATCT</site>
                <isoschizomers>
                    <enzyme>BglII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGCGATTAGTGCTCTATTTAT</pcr_primer_p1>
		<pcr_primer_p2>AAGAAAATGTCCAATTTTAGTACC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TGAGCGATTAGTGCTCTATTTATATTTTTTAAAAAACATTGCAGACAAAGCCAGTGGTCGTCTTGGCTTATCTCCAGACGCCGACAGATCTCTTCTTCTGAATGCACCCATTTTCACGGATACCATCAATTCGTCCCACCCACTGAAACTGGACCTTTCTCGCACTGTAGACGCCTGCGCGATCAATGCCTGTACCACTTATCCGGACCGTCAACAGGTACTAAAATTGGACATTTTCTT</canonical_amplicon>
		<polymorphic_amplicon>TGAGCGATTAGTGCTCTATTTATATTTTTTAAAAAACATTGCAGACAAAGCCAGTGGTCGTCTTGGCTTATCTCCAGACGCCGACARATCTCTTCTTCTGAATGCACCCATTTTCACGGATACCATCAATTCGTCCCACCCACTGAAACTGGACCTTTCTCGCACTGTAGACGCCTGCGCGATCAATGCCTGTACCACTTATCCGGACCGTCAACAGGTACTAAAATTGGACATTTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38310</snp_id>
        <super_contig>c012800957.Contig1</super_contig>
        <contig_pos>71629</contig_pos>
        <strand>+</strand>
        <context>TTCTATACTC[A/G]TTTTCTTATC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCGGACCGTCAACAGGTACTAAAATTGGACATTTTCTTATTCTATACTC</left_flank>
        <right_flank>TTTTCTTATCAGTTCTATTTTGCCGATGAGCATCTGCGCGGCGTCAGATC</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGGGCGTCGTCTCATTCAGGAGTTGAAGAGGAAGTTGACGAGAGGAGATGTGATTGATTGCGATAGCCTGGATCAGATGTGAGCTTAAATTTCTTTCTGTCTTGAAGACTTAATTTTCCAGTTTTGAAAACTTCCGTAAGACGATCCACGTGGATGAAGAGTTGAAAAACTTTACCGAACAAGAAGCCCAGTTGGACTACTCCTCGCTGTTTTATATTTCAAAAACTATTCCTGGCTTCGTCTATGGTGAGCGATTAGTGCTCTATTTATATTTTTTAAAAAACATTGCAGACAAAGCCAGTGGTCGTCTTGGCTTATCTCCAGACGCCGACAGATCTCTTCTTCTGAATGCACCCATTTTCACGGATACCATCAATTCGTCCCACCCACTGAAACTGGACCTTTCTCGCACTGTAGACGCCTGCGCGATCAATGCCTGTACCACTTATCCGGACCGTCAACAGGTACTAAAATTGGACATTTTCTTATTCTATACTCGTTTTCTTATCAGTTCTATTTTGCCGATGAGCATCTGCGCGGCGTCAGATCAGCAATGTTCTGGAAGAAGCCATCGAACAGAACCAGCGTTATGGAATCTAACTTCGTGAGTTTGATTTTGCATTTTTTACATTAGAAAGGGTCTTTCAGACGAGCATCCACAGTTGCATTTCACCCAATAATCCGAGACTTCAAGTTGAAACATTTCGGATTGAGCCGACGAAACTGTGTTTGGTGGATGCCGATTTCGAGAGAGCCAAGGAGAACATTGACAAACGAAAGTCGCAGAGTTTTGAGAAATTCTTTGCTGTATATGGGAACCTGAACAAGGAGGAAGCAGGAGAAGACCAAAAGGAAATGGAAGCAGCTGATGATGTATAACTTTTTGAATGATATTGTTTTAAGCAATAAACTAGTTGTAGAATAACTAATGTACTATCATTGTACTTTCGCTCCGACACAGGCTCACCACCTAAGTGTCGGACCAACCACTTCAAAATT</canonical>
            <polymorphic>AAGGGCGTCGTCTCATTCAGGAGTTGAAGAGGAAGTTGACGAGAGGAGATGTGATTGATTGCGATAGCCTGGATCAGATGTGAGCTTAAATTTCTTTCTGTCTTGAAGACTTAATTTTCCAGTTTTGAAAACTTCCGTAAGACGATCCACGTGGATGAAGAGTTGAAAAACTTTACCGAACAAGAAGCCCAGTTGGACTACTCCTCGCTGTTTTATATTTCAAAAACTATTCCTGGCTTCGTCTATGGTGAGCGATTAGTGCTCTATTTATATTTTTTAAAAAACATTGCAGACAAAGCCAGTGGTCGTCTTGGCTTATCTCCAGACGCCGACAGATCTCTTCTTCTGAATGCACCCATTTTCACGGATACCATCAATTCGTCCCACCCACTGAAACTGGACCTTTCTCGCACTGTAGACGCCTGCGCGATCAATGCCTGTACCACTTATCCGGACCGTCAACAGGTACTAAAATTGGACATTTTCTTATTCTATACTCRTTTTCTTATCAGTTCTATTTTGCCGATGAGCATCTGCGCGGCGTCAGATCAGCAATGTTCTGGAAGAAGCCATCGAACAGAACCAGCGTTATGGAATCTAACTTCGTGAGTTTGATTTTGCATTTTTTACATTAGAAAGGGTCTTTCAGACGAGCATCCACAGTTGCATTTCACCCAATAATCCGAGACTTCAAGTTGAAACATTTCGGATTGAGCCGACGAAACTGTGTTTGGTGGATGCCGATTTCGAGAGAGCCAAGGAGAACATTGACAAACGAAAGTCGCAGAGTTTTGAGAAATTCTTTGCTGTATATGGGAACCTGAACAAGGAGGAAGCAGGAGAAGACCAAAAGGAAATGGAAGCAGCTGATGATGTATAACTTTTTGAATGATATTGTTTTAAGCAATAAACTAGTTGTAGAATAACTAATGTACTATCATTGTACTTTCGCTCCGACACAGGCTCACCACCTAAGTGTCGGACCAACCACTTCAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCTTTCTCGCACTGTAGA</pcr_primer_p1>
		<pcr_primer_p2>TGAAAGACCCTTTCTAATGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GACCTTTCTCGCACTGTAGACGCCTGCGCGATCAATGCCTGTACCACTTATCCGGACCGTCAACAGGTACTAAAATTGGACATTTTCTTATTCTATACTCGTTTTCTTATCAGTTCTATTTTGCCGATGAGCATCTGCGCGGCGTCAGATCAGCAATGTTCTGGAAGAAGCCATCGAACAGAACCAGCGTTATGGAATCTAACTTCGTGAGTTTGATTTTGCATTTTTTACATTAGAAAGGGTCTTTCA</canonical_amplicon>
		<polymorphic_amplicon>GACCTTTCTCGCACTGTAGACGCCTGCGCGATCAATGCCTGTACCACTTATCCGGACCGTCAACAGGTACTAAAATTGGACATTTTCTTATTCTATACTCRTTTTCTTATCAGTTCTATTTTGCCGATGAGCATCTGCGCGGCGTCAGATCAGCAATGTTCTGGAAGAAGCCATCGAACAGAACCAGCGTTATGGAATCTAACTTCGTGAGTTTGATTTTGCATTTTTTACATTAGAAAGGGTCTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38311</snp_id>
        <super_contig>c012800957.Contig1</super_contig>
        <contig_pos>73405</contig_pos>
        <strand></strand>
        <context>AAAACAGAGC[A/G]GTTAGCGAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTACCAATTTTCAGGGACATTCTGAAAAAACATTATGTAAAAACAGAGC</left_flank>
        <right_flank>GTTAGCGAACGAATATATCTATTCTTATGGTTTGGTGGTCCTCGCTGCTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGACCTCTATTCTTTTTTGGGTCCTCTATTCTTTTTTTTGGGACCTCTATTCTTTTTTGGGACCTCTATTCTTTTTTGGGACCTCTAAACTAGAAAAGAGCCGAAAGCTCTATAACTGCGTCAGAGAGTTTTCCTTGTGATACACCCAGTTGACACTTGCTCCAGGCGATTTTTAAACCAATTTCTGAACAAAACGGTTACTGTTGAACCCTTAAAACTTGAGAACTGCATATGCAAGTCTTTGGTCTCAACTATGGGTGGATTGGGATTACAACACACGAGACTCGTCGCAGAAATTTTAGAGTTTAAATGCGTGTCTTCTATCCTATGATCCCAATTATCGCATCGTTCACTGCGATTTTCATTAAAATTGGTTAATGTCAAACTTGAAGGTCTGGAGGTTGATCGGCGAGTTTTTTATCTGATACATCCGAATTTGAGCTTGTTAGTACCAATTTTCAGGGACATTCTGAAAAAACATTATGTAAAAACAGAGCAGTTAGCGAACGAATATATCTATTCTTATGGTTTGGTGGTCCTCGCTGCTAGCCACTCTGCTACCGAGGCATTTTTATCTCTTGCACGCAATGCAGTGAAAGAAGGGGAGGAAAAGGGAAGCGATAAGACACGCGAAAATGTTATAATTTCAGATCGATTTTTCTCGAGTTTCAGCGAGTTTTGCAGGTAGCCACCGCGTCACGTAAAAGCCCATACCCGATTCTATAAATGAGCCAATTTAGAGAAAATTCTGAAGAGCTTTCTGAACGACACTCCCTGGTTAGGCGCTCACCAGCAAGTATGGCTGCCTTCAGTGTAGTGTTCCAATTTTTAACGTATAGTGTTGCTAAAAATACTATAATTGGTTGATGAAATATAACTAAAAGGGAACTGAAACAATGCCACCGAAAAGTATAAAGTATTTGATATAAAAATAAAACAACATGATTCCTTTTAAAAAATAATTGAATTGTAGAAAAGTGATTTGGAGTAGTATACAA</canonical>
            <polymorphic>TGGGACCTCTATTCTTTTTTGGGTCCTCTATTCTTTTTTTTGGGACCTCTATTCTTTTTTGGGACCTCTATTCTTTTTTGGGACCTCTAAACTAGAAAAGAGCCGAAAGCTCTATAACTGCGTCAGAGAGTTTTCCTTGTGATACACCCAGTTGACACTTGCTCCAGGCGATTTTTAAACCAATTTCTGAACAAAACGGTTACTGTTGAACCCTTAAAACTTGAGAACTGCATATGCAAGTCTTTGGTCTCAACTATGGGTGGATTGGGATTACAACACACGAGACTCGTCGCAGAAATTTTAGAGTTTAAATGCGTGTCTTCTATCCTATGATCCCAATTATCGCATCGTTCACTGCGATTTTCATTAAAATTGGTTAATGTCAAACTTGAAGGTCTGGAGGTTGATCGGCGAGTTTTTTATCTGATACATCCGAATTTGAGCTTGTTAGTACCAATTTTCAGGGACATTCTGAAAAAACATTATGTAAAAACAGAGCRGTTAGCGAACGAATATATCTATTCTTATGGTTTGGTGGTCCTCGCTGCTAGCCACTCTGCTACCGAGGCATTTTTATCTCTTGCACGCAATGCAGTGAAAGAAGGGGAGGAAAAGGGAAGCGATAAGACACGCGAAAATGTTATAATTTCAGATCGATTTTTCTCGAGTTTCAGCGAGTTTTGCAGGTAGCCACCGCGTCACGTAAAAGCCCATACCCGATTCTATAAATGAGCCAATTTAGAGAAAATTCTGAAGAGCTTTCTGAACGACACTCCCTGGTTAGGCGCTCACCAGCAAGTATGGCTGCCTTCAGTGTAGTGTTCCAATTTTTAACGTATAGTGTTGCTAAAAATACTATAATTGGTTGATGAAATATAACTAAAAGGGAACTGAAACAATGCCACCGAAAAGTATAAAGTATTTGATATAAAAATAAAACAACATGATTCCTTTTAAAAAATAATTGAATTGTAGAAAAGTGATTTGGAGTAGTATACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATTTGAGCTTGTTAGTACC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATTGGAACACTACACTGAA</pcr_primer_p2>
		<pcr_amplicon_size>399</pcr_amplicon_size>
		<canonical_amplicon>CGAATTTGAGCTTGTTAGTACCAATTTTCAGGGACATTCTGAAAAAACATTATGTAAAAACAGAGCAGTTAGCGAACGAATATATCTATTCTTATGGTTTGGTGGTCCTCGCTGCTAGCCACTCTGCTACCGAGGCATTTTTATCTCTTGCACGCAATGCAGTGAAAGAAGGGGAGGAAAAGGGAAGCGATAAGACACGCGAAAATGTTATAATTTCAGATCGATTTTTCTCGAGTTTCAGCGAGTTTTGCAGGTAGCCACCGCGTCACGTAAAAGCCCATACCCGATTCTATAAATGAGCCAATTTAGAGAAAATTCTGAAGAGCTTTCTGAACGACACTCCCTGGTTAGGCGCTCACCAGCAAGTATGGCTGCCTTCAGTGTAGTGTTCCAATTTTT</canonical_amplicon>
		<polymorphic_amplicon>CGAATTTGAGCTTGTTAGTACCAATTTTCAGGGACATTCTGAAAAAACATTATGTAAAAACAGAGCRGTTAGCGAACGAATATATCTATTCTTATGGTTTGGTGGTCCTCGCTGCTAGCCACTCTGCTACCGAGGCATTTTTATCTCTTGCACGCAATGCAGTGAAAGAAGGGGAGGAAAAGGGAAGCGATAAGACACGCGAAAATGTTATAATTTCAGATCGATTTTTCTCGAGTTTCAGCGAGTTTTGCAGGTAGCCACCGCGTCACGTAAAAGCCCATACCCGATTCTATAAATGAGCCAATTTAGAGAAAATTCTGAAGAGCTTTCTGAACGACACTCCCTGGTTAGGCGCTCACCAGCAAGTATGGCTGCCTTCAGTGTAGTGTTCCAATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38312</snp_id>
        <super_contig>c012800957.Contig1</super_contig>
        <contig_pos>113270</contig_pos>
        <strand></strand>
        <context>gtaaaaccga[A/C]aaaggttgaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCCGATCACTTTGAAACAAAAAAATCCATAACGGAAGGTGTAAAACCGA</left_flank>
        <right_flank>AAAGGTTGAAATTTTTGCTCTCACAAGTCATTTTTGAAAATGCATATATA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCAGTTTTTCTTTGAGTTTTTTATCTCACTAGGATTGGTTTTTTTTCTTTTGAAGTTTTAGGATTGTAGAATTTCACAATTTCGTAATGACAATGGGAAACATTCATATTGGAGATTCTGAACTATTTTTGGTTGACTAAGTGGTCGCAACTTTGAACCTTCCGGATTCTGCACGATATAAAATTGTTAGTTAGTTTGAGGTGTTTAGAAAAATAGGAAAAGCGTGATGAATTTCTTGGAAACTCCGAGTTATCTAAAAACTAAGATACAGTAAATCTTTTAATATAACGTATGCCTACACATATCTTTTCAACTGGGAAATTTGAGCCTAATTATCTCGGTTTCTTTACGATATATTGAAAACCTGTCTACTGATAAAACGTTTGTAATAATATCATCGGAATTTTTACCGTTCGAAGAAGTTGTATGCCTCTTACAGAAATTAGTTTCCGATCACTTTGAAACAAAAAAATCCATAACGGAAGGTGTAAAACCGAAAAAGGTTGAAATTTTTGCTCTCACAAGTCATTTTTGAAAATGCATATATACGGGTTTCTAACAAAACTCCTTTCTCATTATTTTAGTAAAAAGACAGGTCAAAAAGGTTGTCTTTCAGAAAACGGAAAAAAAAACTGTAAAACTAGGAATTTTTAAATAATTTCTGAATGCAAATTTTTCAATTTGCATCTGTTTCACACCCGTCACAATTTTCAGAATGATCGGAAACTTGACACCGGTTCTGAATATGGTTGCGCTTTATTATAGCTTTTTGGTTCCTAATTTCGTCCCAAACTGGTTTTTGCATCATGTTAGCGAAGGTTTTCGATCGAAAGTTACTTTCTGCTCTTGTAGTTTATATAGTTTATCAAAACTCAGAATTAAAAAAATTATTAATTTTCAGCACATTTGCAAACTATCCTCTTGCCATACCTAACCTATCAATTGAAAATCCCAGCAAATTTAAGAATTCACGTAATATTAGGTTGGCCGGAAAGTAA</canonical>
            <polymorphic>GTCCAGTTTTTCTTTGAGTTTTTTATCTCACTAGGATTGGTTTTTTTTCTTTTGAAGTTTTAGGATTGTAGAATTTCACAATTTCGTAATGACAATGGGAAACATTCATATTGGAGATTCTGAACTATTTTTGGTTGACTAAGTGGTCGCAACTTTGAACCTTCCGGATTCTGCACGATATAAAATTGTTAGTTAGTTTGAGGTGTTTAGAAAAATAGGAAAAGCGTGATGAATTTCTTGGAAACTCCGAGTTATCTAAAAACTAAGATACAGTAAATCTTTTAATATAACGTATGCCTACACATATCTTTTCAACTGGGAAATTTGAGCCTAATTATCTCGGTTTCTTTACGATATATTGAAAACCTGTCTACTGATAAAACGTTTGTAATAATATCATCGGAATTTTTACCGTTCGAAGAAGTTGTATGCCTCTTACAGAAATTAGTTTCCGATCACTTTGAAACAAAAAAATCCATAACGGAAGGTGTAAAACCGAMAAAGGTTGAAATTTTTGCTCTCACAAGTCATTTTTGAAAATGCATATATACGGGTTTCTAACAAAACTCCTTTCTCATTATTTTAGTAAAAAGACAGGTCAAAAAGGTTGTCTTTCAGAAAACGGAAAAAAAAACTGTAAAACTAGGAATTTTTAAATAATTTCTGAATGCAAATTTTTCAATTTGCATCTGTTTCACACCCGTCACAATTTTCAGAATGATCGGAAACTTGACACCGGTTCTGAATATGGTTGCGCTTTATTATAGCTTTTTGGTTCCTAATTTCGTCCCAAACTGGTTTTTGCATCATGTTAGCGAAGGTTTTCGATCGAAAGTTACTTTCTGCTCTTGTAGTTTATATAGTTTATCAAAACTCAGAATTAAAAAAATTATTAATTTTCAGCACATTTGCAAACTATCCTCTTGCCATACCTAACCTATCAATTGAAAATCCCAGCAAATTTAAGAATTCACGTAATATTAGGTTGGCCGGAAAGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTGTATGCCTCTTACAGAAA</pcr_primer_p1>
		<pcr_primer_p2>TATAATAAAGCGCAACCATATTC</pcr_primer_p2>
		<pcr_amplicon_size>345</pcr_amplicon_size>
		<canonical_amplicon>AAGTTGTATGCCTCTTACAGAAATTAGTTTCCGATCACTTTGAAACAAAAAAATCCATAACGGAAGGTGTAAAACCGAAAAAGGTTGAAATTTTTGCTCTCACAAGTCATTTTTGAAAATGCATATATACGGGTTTCTAACAAAACTCCTTTCTCATTATTTTAGTAAAAAGACAGGTCAAAAAGGTTGTCTTTCAGAAAACGGAAAAAAAAACTGTAAAACTAGGAATTTTTAAATAATTTCTGAATGCAAATTTTTCAATTTGCATCTGTTTCACACCCGTCACAATTTTCAGAATGATCGGAAACTTGACACCGGTTCTGAATATGGTTGCGCTTTATTATA</canonical_amplicon>
		<polymorphic_amplicon>AAGTTGTATGCCTCTTACAGAAATTAGTTTCCGATCACTTTGAAACAAAAAAATCCATAACGGAAGGTGTAAAACCGAMAAAGGTTGAAATTTTTGCTCTCACAAGTCATTTTTGAAAATGCATATATACGGGTTTCTAACAAAACTCCTTTCTCATTATTTTAGTAAAAAGACAGGTCAAAAAGGTTGTCTTTCAGAAAACGGAAAAAAAAACTGTAAAACTAGGAATTTTTAAATAATTTCTGAATGCAAATTTTTCAATTTGCATCTGTTTCACACCCGTCACAATTTTCAGAATGATCGGAAACTTGACACCGGTTCTGAATATGGTTGCGCTTTATTATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38313</snp_id>
        <super_contig>c012800957.Contig1</super_contig>
        <contig_pos>150968</contig_pos>
        <strand>+</strand>
        <context>CGAGGACCGA[A/C]GTACCGCACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGTCATCATTCTGACCGCGGCGGGGTTGAACCAGAGTGTACGAGGACCGA</left_flank>
        <right_flank>GTACCGCACACAACCACTCAACCACGCTGCTGCTGAGAGAGAGGACACCA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAATAAAAAATTTCTATCAGAGATGGGCGGAGTTCCTTATTCATTTTTTCTCCCTGATTTTATATTCGTATTCTTTATTCCTTTCACATTCTTCCGGGAAATTTGAGCAATTTCCAATAGAATTTTTTCAAATTTCAAAAGTTTAACCTGAACTGCCACTTAATATGTAATGTAATACAGCCTAAATTTTTCTTCTATGTGTCCGGATGTTTAAATTTCATTCAATGTTTTGTTTTGAGTCTTCCGGATTTTTTACTTTCATGCCTTCTTTTGTATTAAAAAGTTTTATTCTGCTGATCTTCAACTTCTTCAACTCTATAAATATTAACTTTGATAATTGCAAAACGGTGATTAATCACACGTTTTGTAGACAGGGCCGAGGGACACCAGGGGGTTTTCGGGGCCGAAGCACACCTAGCAAACACGGAAGGAAGAGGATGGGCCGAGGCGTCATCATTCTGACCGCGGCGGGGTTGAACCAGAGTGTACGAGGACCGAAGTACCGCACACAACCACTCAACCACGCTGCTGCTGAGAGAGAGGACACCATGACTCGTATATGAATGAGAGGCGGAGATGAGGGGGGAAGAGAGGGAGTTGGTCCGTTCGATAGAAAAAGGGGGAGGGCTCAATGGTCCGCAATAAAGAACGCACACATTGCGTGCGCGCACACACATACATCACGTGAAAGGACCCGTCAATTCTATTATGAGATATTAATGAAAAGATGCCAAGAGTCGGAGCTAAATAGGAAATAGAGAAACTCATTAATATATTGAGTAATAAAGGAACACGCTTCCAGATTAATGAAACTGGTGGAAAAAAAACTAACTTAACTTTCGAATAAATGAATGAATGAAAATGAGTAAATAAAAATGAATGAATGAGAAAAAAGGAAAAAGAAAAAACTCACAGGTAACGTTAGCACCTCCACAAGTGAATACACAATAGCGAATAGGCAGAAAACTATCATTAGAATACGATATTTTCCAAAATTTC</canonical>
            <polymorphic>TTAATAAAAAATTTCTATCAGAGATGGGCGGAGTTCCTTATTCATTTTTTCTCCCTGATTTTATATTCGTATTCTTTATTCCTTTCACATTCTTCCGGGAAATTTGAGCAATTTCCAATAGAATTTTTTCAAATTTCAAAAGTTTAACCTGAACTGCCACTTAATATGTAATGTAATACAGCCTAAATTTTTCTTCTATGTGTCCGGATGTTTAAATTTCATTCAATGTTTTGTTTTGAGTCTTCCGGATTTTTTACTTTCATGCCTTCTTTTGTATTAAAAAGTTTTATTCTGCTGATCTTCAACTTCTTCAACTCTATAAATATTAACTTTGATAATTGCAAAACGGTGATTAATCACACGTTTTGTAGACAGGGCCGAGGGACACCAGGGGGTTTTCGGGGCCGAAGCACACCTAGCAAACACGGAAGGAAGAGGATGGGCCGAGGCGTCATCATTCTGACCGCGGCGGGGTTGAACCAGAGTGTACGAGGACCGAMGTACCGCACACAACCACTCAACCACGCTGCTGCTGAGAGAGAGGACACCATGACTCGTATATGAATGAGAGGCGGAGATGAGGGGGGAAGAGAGGGAGTTGGTCCGTTCGATAGAAAAAGGGGGAGGGCTCAATGGTCCGCAATAAAGAACGCACACATTGCGTGCGCGCACACACATACATCACGTGAAAGGACCCGTCAATTCTATTATGAGATATTAATGAAAAGATGCCAAGAGTCGGAGCTAAATAGGAAATAGAGAAACTCATTAATATATTGAGTAATAAAGGAACACGCTTCCAGATTAATGAAACTGGTGGAAAAAAAACTAACTTAACTTTCGAATAAATGAATGAATGAAAATGAGTAAATAAAAATGAATGAATGAGAAAAAAGGAAAAAGAAAAAACTCACAGGTAACGTTAGCACCTCCACAAGTGAATACACAATAGCGAATAGGCAGAAAACTATCATTAGAATACGATATTTTCCAAAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAATTGCAAAACGGTGATTA</pcr_primer_p1>
		<pcr_primer_p2>ATTCATATACGAGTCATGGTGTC</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>ATAATTGCAAAACGGTGATTAATCACACGTTTTGTAGACAGGGCCGAGGGACACCAGGGGGTTTTCGGGGCCGAAGCACACCTAGCAAACACGGAAGGAAGAGGATGGGCCGAGGCGTCATCATTCTGACCGCGGCGGGGTTGAACCAGAGTGTACGAGGACCGAAGTACCGCACACAACCACTCAACCACGCTGCTGCTGAGAGAGAGGACACCATGACTCGTATATGAAT</canonical_amplicon>
		<polymorphic_amplicon>ATAATTGCAAAACGGTGATTAATCACACGTTTTGTAGACAGGGCCGAGGGACACCAGGGGGTTTTCGGGGCCGAAGCACACCTAGCAAACACGGAAGGAAGAGGATGGGCCGAGGCGTCATCATTCTGACCGCGGCGGGGTTGAACCAGAGTGTACGAGGACCGAMGTACCGCACACAACCACTCAACCACGCTGCTGCTGAGAGAGAGGACACCATGACTCGTATATGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38314</snp_id>
        <super_contig>c012800957.Contig1</super_contig>
        <contig_pos>151037</contig_pos>
        <strand>+</strand>
        <context>ATATGAATGA[A/G]AGGCGGAGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAACCACGCTGCTGCTGAGAGAGAGGACACCATGACTCGTATATGAATGA</left_flank>
        <right_flank>AGGCGGAGATGAGGGGGGAAGAGAGGGAGTTGGTCCGTTCGATAGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTCTTTATTCCTTTCACATTCTTCCGGGAAATTTGAGCAATTTCCAATAGAATTTTTTCAAATTTCAAAAGTTTAACCTGAACTGCCACTTAATATGTAATGTAATACAGCCTAAATTTTTCTTCTATGTGTCCGGATGTTTAAATTTCATTCAATGTTTTGTTTTGAGTCTTCCGGATTTTTTACTTTCATGCCTTCTTTTGTATTAAAAAGTTTTATTCTGCTGATCTTCAACTTCTTCAACTCTATAAATATTAACTTTGATAATTGCAAAACGGTGATTAATCACACGTTTTGTAGACAGGGCCGAGGGACACCAGGGGGTTTTCGGGGCCGAAGCACACCTAGCAAACACGGAAGGAAGAGGATGGGCCGAGGCGTCATCATTCTGACCGCGGCGGGGTTGAACCAGAGTGTACGAGGACCGAAGTACCGCACACAACCACTCAACCACGCTGCTGCTGAGAGAGAGGACACCATGACTCGTATATGAATGAGAGGCGGAGATGAGGGGGGAAGAGAGGGAGTTGGTCCGTTCGATAGAAAAAGGGGGAGGGCTCAATGGTCCGCAATAAAGAACGCACACATTGCGTGCGCGCACACACATACATCACGTGAAAGGACCCGTCAATTCTATTATGAGATATTAATGAAAAGATGCCAAGAGTCGGAGCTAAATAGGAAATAGAGAAACTCATTAATATATTGAGTAATAAAGGAACACGCTTCCAGATTAATGAAACTGGTGGAAAAAAAACTAACTTAACTTTCGAATAAATGAATGAATGAAAATGAGTAAATAAAAATGAATGAATGAGAAAAAAGGAAAAAGAAAAAACTCACAGGTAACGTTAGCACCTCCACAAGTGAATACACAATAGCGAATAGGCAGAAAACTATCATTAGAATACGATATTTTCCAAAATTTCTGTGAGCTCGAGTGTGCAGTAAAAACAATAGAAATGAATTTAGAACCAGGGACCCCAAAAATCCAAAAT</canonical>
            <polymorphic>TATTCTTTATTCCTTTCACATTCTTCCGGGAAATTTGAGCAATTTCCAATAGAATTTTTTCAAATTTCAAAAGTTTAACCTGAACTGCCACTTAATATGTAATGTAATACAGCCTAAATTTTTCTTCTATGTGTCCGGATGTTTAAATTTCATTCAATGTTTTGTTTTGAGTCTTCCGGATTTTTTACTTTCATGCCTTCTTTTGTATTAAAAAGTTTTATTCTGCTGATCTTCAACTTCTTCAACTCTATAAATATTAACTTTGATAATTGCAAAACGGTGATTAATCACACGTTTTGTAGACAGGGCCGAGGGACACCAGGGGGTTTTCGGGGCCGAAGCACACCTAGCAAACACGGAAGGAAGAGGATGGGCCGAGGCGTCATCATTCTGACCGCGGCGGGGTTGAACCAGAGTGTACGAGGACCGAAGTACCGCACACAACCACTCAACCACGCTGCTGCTGAGAGAGAGGACACCATGACTCGTATATGAATGARAGGCGGAGATGAGGGGGGAAGAGAGGGAGTTGGTCCGTTCGATAGAAAAAGGGGGAGGGCTCAATGGTCCGCAATAAAGAACGCACACATTGCGTGCGCGCACACACATACATCACGTGAAAGGACCCGTCAATTCTATTATGAGATATTAATGAAAAGATGCCAAGAGTCGGAGCTAAATAGGAAATAGAGAAACTCATTAATATATTGAGTAATAAAGGAACACGCTTCCAGATTAATGAAACTGGTGGAAAAAAAACTAACTTAACTTTCGAATAAATGAATGAATGAAAATGAGTAAATAAAAATGAATGAATGAGAAAAAAGGAAAAAGAAAAAACTCACAGGTAACGTTAGCACCTCCACAAGTGAATACACAATAGCGAATAGGCAGAAAACTATCATTAGAATACGATATTTTCCAAAATTTCTGTGAGCTCGAGTGTGCAGTAAAAACAATAGAAATGAATTTAGAACCAGGGACCCCAAAAATCCAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTTGAACCAGAGTGTACGA</pcr_primer_p1>
		<pcr_primer_p2>ATAATAGAATTGACGGGTCCT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GGTTGAACCAGAGTGTACGAGGACCGAAGTACCGCACACAACCACTCAACCACGCTGCTGCTGAGAGAGAGGACACCATGACTCGTATATGAATGAGAGGCGGAGATGAGGGGGGAAGAGAGGGAGTTGGTCCGTTCGATAGAAAAAGGGGGAGGGCTCAATGGTCCGCAATAAAGAACGCACACATTGCGTGCGCGCACACACATACATCACGTGAAAGGACCCGTCAATTCTATTAT</canonical_amplicon>
		<polymorphic_amplicon>GGTTGAACCAGAGTGTACGAGGACCGAAGTACCGCACACAACCACTCAACCACGCTGCTGCTGAGAGAGAGGACACCATGACTCGTATATGAATGARAGGCGGAGATGAGGGGGGAAGAGAGGGAGTTGGTCCGTTCGATAGAAAAAGGGGGAGGGCTCAATGGTCCGCAATAAAGAACGCACACATTGCGTGCGCGCACACACATACATCACGTGAAAGGACCCGTCAATTCTATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38315</snp_id>
        <super_contig>c012800957.Contig1</super_contig>
        <contig_pos>152440</contig_pos>
        <strand>+</strand>
        <context>GGTCTTTTTG[C/G]TCATTTCGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGATTCCAAGTGTCAAGAACAATTGACGATTTAGTTCTTTGGTCTTTTTG</left_flank>
        <right_flank>TCATTTCGGTTCCACAACTTTTCATTTGCAAAAATGCTTTGGATCCATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTTTTCGGAGTATATCTGTTTATCCCGTATTTGAGAAAAAAACAAAGTTAAGAGTTTTGTAAAATGAGGGGAACACACAAAAAAGATATATGGACAAAAAAGATATATAGAAAGTTTGAAAAAAAGAAATTAGAATTTCCTTTTAAGATGCTTGAAACGTGGATGTTATCTTACTGGCGATTCCAGAAGTTGTCGAAACCTTGGCCAACGTTCTTTTTTGGCAGAAAACGTAGTTTCGGAAATCTTTAATGAGCAGAATTGCAATAAGAGGGTCCAAAGCAGGATAGATGCCAAGAAATGCTCCAGTTTTGTTCGCTTCAACACCAAGTTCTACTCCGAAAATGGGGAGAATTATAAAACAACCAACAGGAACGTACATGGTGATTAACGGTAGAAGAGTCTAGAAGATAAAATGATTTCAAAAATCTTGGGTTTACATGGTACCTGGATTCCAAGTGTCAAGAACAATTGACGATTTAGTTCTTTGGTCTTTTTGCTCATTTCGGTTCCACAACTTTTCATTTGCAAAAATGCTTTGGATCCATAATAAATGATTGCAAAGAAGCAGCTATCCATGATAAAACAACACCCAAAGAACGGAACTAATTGATCAAAATTCCAGTGTTCTGGTGATGTTTCAGTAGCAGGCGACTTGTAAAGCATTGAAATAAATGAAACTTTATGAGAGTCCACATTGTAACTTCGGAAAAGAACATCGCTGAAAACGAAACACATAAATTTATAAGTTTCAACTAACTCACTGATAAATATTCTCCTTTTCTTCATCATATCCCATCAGAAAATAAACGTTGCATGTCCATGCGACAAATACAACAAAACAAGGAGCAATAGTAAGAATAATACGTTGTCCTTCAAAGTAGTATACCTTTTCTGCCCTGAAATAGTTTTATACTCAGACAAGAATGAAGTTCCTGCCACATGCCAGCGGCAAAAACTATTGTGGTCACAGTTTCTTAAAGTTCCTGCCGATGGGTTA</canonical>
            <polymorphic>AAAGTTTTCGGAGTATATCTGTTTATCCCGTATTTGAGAAAAAAACAAAGTTAAGAGTTTTGTAAAATGAGGGGAACACACAAAAAAGATATATGGACAAAAAAGATATATAGAAAGTTTGAAAAAAAGAAATTAGAATTTCCTTTTAAGATGCTTGAAACGTGGATGTTATCTTACTGGCGATTCCAGAAGTTGTCGAAACCTTGGCCAACGTTCTTTTTTGGCAGAAAACGTAGTTTCGGAAATCTTTAATGAGCAGAATTGCAATAAGAGGGTCCAAAGCAGGATAGATGCCAAGAAATGCTCCAGTTTTGTTCGCTTCAACACCAAGTTCTACTCCGAAAATGGGGAGAATTATAAAACAACCAACAGGAACGTACATGGTGATTAACGGTAGAAGAGTCTAGAAGATAAAATGATTTCAAAAATCTTGGGTTTACATGGTACCTGGATTCCAAGTGTCAAGAACAATTGACGATTTAGTTCTTTGGTCTTTTTGSTCATTTCGGTTCCACAACTTTTCATTTGCAAAAATGCTTTGGATCCATAATAAATGATTGCAAAGAAGCAGCTATCCATGATAAAACAACACCCAAAGAACGGAACTAATTGATCAAAATTCCAGTGTTCTGGTGATGTTTCAGTAGCAGGCGACTTGTAAAGCATTGAAATAAATGAAACTTTATGAGAGTCCACATTGTAACTTCGGAAAAGAACATCGCTGAAAACGAAACACATAAATTTATAAGTTTCAACTAACTCACTGATAAATATTCTCCTTTTCTTCATCATATCCCATCAGAAAATAAACGTTGCATGTCCATGCGACAAATACAACAAAACAAGGAGCAATAGTAAGAATAATACGTTGTCCTTCAAAGTAGTATACCTTTTCTGCCCTGAAATAGTTTTATACTCAGACAAGAATGAAGTTCCTGCCACATGCCAGCGGCAAAAACTATTGTGGTCACAGTTTCTTAAAGTTCCTGCCGATGGGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGGTGATTAACGGTAGAAGAGT</pcr_primer_p1>
		<pcr_primer_p2>ACACTGGAATTTTGATCAATTAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATGGTGATTAACGGTAGAAGAGTCTAGAAGATAAAATGATTTCAAAAATCTTGGGTTTACATGGTACCTGGATTCCAAGTGTCAAGAACAATTGACGATTTAGTTCTTTGGTCTTTTTGCTCATTTCGGTTCCACAACTTTTCATTTGCAAAAATGCTTTGGATCCATAATAAATGATTGCAAAGAAGCAGCTATCCATGATAAAACAACACCCAAAGAACGGAACTAATTGATCAAAATTCCAGTGT</canonical_amplicon>
		<polymorphic_amplicon>ATGGTGATTAACGGTAGAAGAGTCTAGAAGATAAAATGATTTCAAAAATCTTGGGTTTACATGGTACCTGGATTCCAAGTGTCAAGAACAATTGACGATTTAGTTCTTTGGTCTTTTTGSTCATTTCGGTTCCACAACTTTTCATTTGCAAAAATGCTTTGGATCCATAATAAATGATTGCAAAGAAGCAGCTATCCATGATAAAACAACACCCAAAGAACGGAACTAATTGATCAAAATTCCAGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38316</snp_id>
        <super_contig>c012800957.Contig1</super_contig>
        <contig_pos>152686</contig_pos>
        <strand>+</strand>
        <context>CATAAATTTA[G/T]AAGTTTCAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATTGTAACTTCGGAAAAGAACATCGCTGAAAACGAAACACATAAATTTA</left_flank>
        <right_flank>AAGTTTCAACTAACTCACTGATAAATATTCTCCTTTTCTTCATCATATCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTAATGAGCAGAATTGCAATAAGAGGGTCCAAAGCAGGATAGATGCCAAGAAATGCTCCAGTTTTGTTCGCTTCAACACCAAGTTCTACTCCGAAAATGGGGAGAATTATAAAACAACCAACAGGAACGTACATGGTGATTAACGGTAGAAGAGTCTAGAAGATAAAATGATTTCAAAAATCTTGGGTTTACATGGTACCTGGATTCCAAGTGTCAAGAACAATTGACGATTTAGTTCTTTGGTCTTTTTGCTCATTTCGGTTCCACAACTTTTCATTTGCAAAAATGCTTTGGATCCATAATAAATGATTGCAAAGAAGCAGCTATCCATGATAAAACAACACCCAAAGAACGGAACTAATTGATCAAAATTCCAGTGTTCTGGTGATGTTTCAGTAGCAGGCGACTTGTAAAGCATTGAAATAAATGAAACTTTATGAGAGTCCACATTGTAACTTCGGAAAAGAACATCGCTGAAAACGAAACACATAAATTTATAAGTTTCAACTAACTCACTGATAAATATTCTCCTTTTCTTCATCATATCCCATCAGAAAATAAACGTTGCATGTCCATGCGACAAATACAACAAAACAAGGAGCAATAGTAAGAATAATACGTTGTCCTTCAAAGTAGTATACCTTTTCTGCCCTGAAATAGTTTTATACTCAGACAAGAATGAAGTTCCTGCCACATGCCAGCGGCAAAAACTATTGTGGTCACAGTTTCTTAAAGTTCCTGCCGATGGGTTAAGGCACTGGGTTTAAAAAAAGTTCCTGCCGCTGCCCGGCGGCAGAAACTTCATTTTTGTCTGAGTATGTATAAGATTCCAGCTTTGAACTCATCTGCAAACAGCAAGGTATCTGTAGTAAAAATGTAGAGCTAATAGAGAAATGCACAATCCAAATGATCCGCAGTACACAGCTGAAAATGACTGTACATACGTGTTTTTCACATTTTCCCAATTACCAATTAATGGGACGCCTATTTGTCGGTAT</canonical>
            <polymorphic>CTTTAATGAGCAGAATTGCAATAAGAGGGTCCAAAGCAGGATAGATGCCAAGAAATGCTCCAGTTTTGTTCGCTTCAACACCAAGTTCTACTCCGAAAATGGGGAGAATTATAAAACAACCAACAGGAACGTACATGGTGATTAACGGTAGAAGAGTCTAGAAGATAAAATGATTTCAAAAATCTTGGGTTTACATGGTACCTGGATTCCAAGTGTCAAGAACAATTGACGATTTAGTTCTTTGGTCTTTTTGCTCATTTCGGTTCCACAACTTTTCATTTGCAAAAATGCTTTGGATCCATAATAAATGATTGCAAAGAAGCAGCTATCCATGATAAAACAACACCCAAAGAACGGAACTAATTGATCAAAATTCCAGTGTTCTGGTGATGTTTCAGTAGCAGGCGACTTGTAAAGCATTGAAATAAATGAAACTTTATGAGAGTCCACATTGTAACTTCGGAAAAGAACATCGCTGAAAACGAAACACATAAATTTAKAAGTTTCAACTAACTCACTGATAAATATTCTCCTTTTCTTCATCATATCCCATCAGAAAATAAACGTTGCATGTCCATGCGACAAATACAACAAAACAAGGAGCAATAGTAAGAATAATACGTTGTCCTTCAAAGTAGTATACCTTTTCTGCCCTGAAATAGTTTTATACTCAGACAAGAATGAAGTTCCTGCCACATGCCAGCGGCAAAAACTATTGTGGTCACAGTTTCTTAAAGTTCCTGCCGATGGGTTAAGGCACTGGGTTTAAAAAAAGTTCCTGCCGCTGCCCGGCGGCAGAAACTTCATTTTTGTCTGAGTATGTATAAGATTCCAGCTTTGAACTCATCTGCAAACAGCAAGGTATCTGTAGTAAAAATGTAGAGCTAATAGAGAAATGCACAATCCAAATGATCCGCAGTACACAGCTGAAAATGACTGTACATACGTGTTTTTCACATTTTCCCAATTACCAATTAATGGGACGCCTATTTGTCGGTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 388 111</canonical_bands>
                <polymorphic_bands>889 111</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTAATTGATCAAAATTCCAGTG</pcr_primer_p1>
		<pcr_primer_p2>TATTGCTCCTTGTTTTGTTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTAATTGATCAAAATTCCAGTGTTCTGGTGATGTTTCAGTAGCAGGCGACTTGTAAAGCATTGAAATAAATGAAACTTTATGAGAGTCCACATTGTAACTTCGGAAAAGAACATCGCTGAAAACGAAACACATAAATTTATAAGTTTCAACTAACTCACTGATAAATATTCTCCTTTTCTTCATCATATCCCATCAGAAAATAAACGTTGCATGTCCATGCGACAAATACAACAAAACAAGGAGCAATA</canonical_amplicon>
		<polymorphic_amplicon>ACTAATTGATCAAAATTCCAGTGTTCTGGTGATGTTTCAGTAGCAGGCGACTTGTAAAGCATTGAAATAAATGAAACTTTATGAGAGTCCACATTGTAACTTCGGAAAAGAACATCGCTGAAAACGAAACACATAAATTTAKAAGTTTCAACTAACTCACTGATAAATATTCTCCTTTTCTTCATCATATCCCATCAGAAAATAAACGTTGCATGTCCATGCGACAAATACAACAAAACAAGGAGCAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38317</snp_id>
        <super_contig>c012901526.Contig1</super_contig>
        <contig_pos>20257</contig_pos>
        <strand></strand>
        <context>gcaatgctca[T/C]ttggtgtgca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAATGGTTGAAAAAAGCAGAAAAGCACAAAATTGAAATGAGCAATGCTCA</left_flank>
        <right_flank>TTGGTGTGCAAAAACCACTATAAAAGAATGCAGAAAAGTTCTGAACCGTC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTGGCCAAGTTTAAGGAACATTCTGAAGACCTTTTCTAGGTCTACATTTCACATTTTCATATTTGAAACTTTGGTTTCCCTTATTGATTTTTTGTAGGCTCCGGGACGTTTCAGAACCCGACGTTTCGGAACCACGACGGTTCAGAACTTTTCTGCATTCTTGTATAGTGGTTTTTGCACACCAAATGAGCATTGCTCATTTCAATTTTGTGCTTTTCTGCTTTTTTCAACCATTCTCATCTACCGTACTGCAAATAAAGATACGTTCACACTCGGAATCTCTCAAAAAATCGAATAAAAAAATTGAAAATTCCAAAAACGATGTCTGGAAGTACCGGCGAATATGAGTCTGATTCTAGACATTGTTTTTGAAATTTTGAAATTTTTATTCGATTTTTTGAGAGATTCCGAGTGTGAACGTATCTTTATTTGCAGTACGGTAGATGAGAATGGTTGAAAAAAGCAGAAAAGCACAAAATTGAAATGAGCAATGCTCATTTGGTGTGCAAAAACCACTATAAAAGAATGCAGAAAAGTTCTGAACCGTCGTGGTTCCGAAACGTCGGGTTCTGAAACGTCCCGGAGCCTACAAAAAATCAATAAGGGAAACCAAAGTTTCAAATATGAAAATGTGAAATGTAGACCTAGAAAAGGTCTTCAGAATGTTCCTTAAACTTGGCCAGTTTCAAATTTTTGATTTCCCGCGAAATTCAAAAAATCAAAATGAGCCAAATTTAGTATCATTTTGAAGGGCTTTTCCGGCTCTACATTCATCATCTTGAATTGTTAGAAAATTTTGATTTTGAAGAAAAAAAGCGGCATTTTTGGAGTGCGAAACCCCAAAAAACCGCAAAATTTCGAATTTTCGGAACGTGGCCTAGAATTCCAACATTTTGGATTTCTAGGCCACCGATAAAAAATTTCGGTTTTTCGATTATTTCCAAGCTTTTTATGGGTTTTAAACATCAAAAACGTCATGTTTGGGGTCGGACACCTCC</canonical>
            <polymorphic>AACTGGCCAAGTTTAAGGAACATTCTGAAGACCTTTTCTAGGTCTACATTTCACATTTTCATATTTGAAACTTTGGTTTCCCTTATTGATTTTTTGTAGGCTCCGGGACGTTTCAGAACCCGACGTTTCGGAACCACGACGGTTCAGAACTTTTCTGCATTCTTGTATAGTGGTTTTTGCACACCAAATGAGCATTGCTCATTTCAATTTTGTGCTTTTCTGCTTTTTTCAACCATTCTCATCTACCGTACTGCAAATAAAGATACGTTCACACTCGGAATCTCTCAAAAAATCGAATAAAAAAATTGAAAATTCCAAAAACGATGTCTGGAAGTACCGGCGAATATGAGTCTGATTCTAGACATTGTTTTTGAAATTTTGAAATTTTTATTCGATTTTTTGAGAGATTCCGAGTGTGAACGTATCTTTATTTGCAGTACGGTAGATGAGAATGGTTGAAAAAAGCAGAAAAGCACAAAATTGAAATGAGCAATGCTCAYTTGGTGTGCAAAAACCACTATAAAAGAATGCAGAAAAGTTCTGAACCGTCGTGGTTCCGAAACGTCGGGTTCTGAAACGTCCCGGAGCCTACAAAAAATCAATAAGGGAAACCAAAGTTTCAAATATGAAAATGTGAAATGTAGACCTAGAAAAGGTCTTCAGAATGTTCCTTAAACTTGGCCAGTTTCAAATTTTTGATTTCCCGCGAAATTCAAAAAATCAAAATGAGCCAAATTTAGTATCATTTTGAAGGGCTTTTCCGGCTCTACATTCATCATCTTGAATTGTTAGAAAATTTTGATTTTGAAGAAAAAAAGCGGCATTTTTGGAGTGCGAAACCCCAAAAAACCGCAAAATTTCGAATTTTCGGAACGTGGCCTAGAATTCCAACATTTTGGATTTCTAGGCCACCGATAAAAAATTTCGGTTTTTCGATTATTTCCAAGCTTTTTATGGGTTTTAAACATCAAAAACGTCATGTTTGGGGTCGGACACCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGAGTGTGAACGTATCTTTA</pcr_primer_p1>
		<pcr_primer_p2>ACCTTTTCTAGGTCTACATTTCAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCGAGTGTGAACGTATCTTTATTTGCAGTACGGTAGATGAGAATGGTTGAAAAAAGCAGAAAAGCACAAAATTGAAATGAGCAATGCTCATTTGGTGTGCAAAAACCACTATAAAAGAATGCAGAAAAGTTCTGAACCGTCGTGGTTCCGAAACGTCGGGTTCTGAAACGTCCCGGAGCCTACAAAAAATCAATAAGGGAAACCAAAGTTTCAAATATGAAAATGTGAAATGTAGACCTAGAAAAGGT</canonical_amplicon>
		<polymorphic_amplicon>CCGAGTGTGAACGTATCTTTATTTGCAGTACGGTAGATGAGAATGGTTGAAAAAAGCAGAAAAGCACAAAATTGAAATGAGCAATGCTCAYTTGGTGTGCAAAAACCACTATAAAAGAATGCAGAAAAGTTCTGAACCGTCGTGGTTCCGAAACGTCGGGTTCTGAAACGTCCCGGAGCCTACAAAAAATCAATAAGGGAAACCAAAGTTTCAAATATGAAAATGTGAAATGTAGACCTAGAAAAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38318</snp_id>
        <super_contig>c012901526.Contig1</super_contig>
        <contig_pos>63050</contig_pos>
        <strand>+</strand>
        <context>aaaatggttc[A/T]aAAAGTATCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGATTCCAAAACTGCACAAAAAATTGGAAAAACCGAAGAAAAATGGTTC</left_flank>
        <right_flank>AAAAGTATCTGAAAAAGTGAGAAGGTTACTGTAAGTAAAATTTTAAAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAAGTCATTTTTTTTTTGGAAATTTTGATTTTTCCAGGAACACTTGCTGAGCCACAACTTTGGAAAATGGCCAAATATCGAATCTCAAAATCTGCCAAATTTTCAAAAAATAAGTGAGAATAATTTTTTTTTCCAAAAATTCAAATAGTCAGAATAAAAATTTGTCAGAAATTCTAAAATGCTGAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTTTAAAATTCTAAAATTCTAAAATTCTAAAATTCGGAAATTCGGAAGTTCTAAAATTTTAAAATTCTAAAATTCTAAAATTCTAAAATTTTAAAATTCTAAAATTCTAAAATTCTAAAATTCGGAAATTCAAATTTTTCCAGATTCCAAAACTGCACAAAAAATTGGAAAAACCGAAGAAAAATGGTTCGAAAAGTATCTGAAAAAGTGAGAAGGTTACTGTAAGTAAAATTTTAAAATAATTTCATTTTTCAGACCGAAAAATCCAGAAATTTCAATAGAAATGAAAGATTTGAAAACTGGAAAAAGGTGAGGAATTTTGGTTTTTTTTTGAGAATTTTAGATCATTTTTAGCATTTTTAAGACAATTTGAAACCGATTTTTAATATTTTTCTAAAATTGTGAGACTATTTTTAGTTTTTTTTTTGAGCTTTTTTCAAACTTTTTTTTATCATTTCAGTTTGATTGTGACTGCTTTTAAATTGTCTTACAATTAGTTGGTTTTTTGCTAATATTTGAGTAATCCGGCTATTTTCAGTCTATAGAGGCCTTCTTAACTTTGAGCTAATTTATCTCAATTACTGTAAGAGATATCAAAAAGTGATTCACTGATAAAATGTTTATCATAATATCAGTAAAATTTCAGCAGTTGACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATT</canonical>
            <polymorphic>TGGAAGTCATTTTTTTTTTGGAAATTTTGATTTTTCCAGGAACACTTGCTGAGCCACAACTTTGGAAAATGGCCAAATATCGAATCTCAAAATCTGCCAAATTTTCAAAAAATAAGTGAGAATAATTTTTTTTTCCAAAAATTCAAATAGTCAGAATAAAAATTTGTCAGAAATTCTAAAATGCTGAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTTTAAAATTCTAAAATTCTAAAATTCTAAAATTCGGAAATTCGGAAGTTCTAAAATTTTAAAATTCTAAAATTCTAAAATTCTAAAATTTTAAAATTCTAAAATTCTAAAATTCTAAAATTCGGAAATTCAAATTTTTCCAGATTCCAAAACTGCACAAAAAATTGGAAAAACCGAAGAAAAATGGTTCWAAAAGTATCTGAAAAAGTGAGAAGGTTACTGTAAGTAAAATTTTAAAATAATTTCATTTTTCAGACCGAAAAATCCAGAAATTTCAATAGAAATGAAAGATTTGAAAACTGGAAAAAGGTGAGGAATTTTGGTTTTTTTTTGAGAATTTTAGATCATTTTTAGCATTTTTAAGACAATTTGAAACCGATTTTTAATATTTTTCTAAAATTGTGAGACTATTTTTAGTTTTTTTTTTGAGCTTTTTTCAAACTTTTTTTTATCATTTCAGTTTGATTGTGACTGCTTTTAAATTGTCTTACAATTAGTTGGTTTTTTGCTAATATTTGAGTAATCCGGCTATTTTCAGTCTATAGAGGCCTTCTTAACTTTGAGCTAATTTATCTCAATTACTGTAAGAGATATCAAAAAGTGATTCACTGATAAAATGTTTATCATAATATCAGTAAAATTTCAGCAGTTGACCACTTTTTGATATCTTTCACAGTAACCGAGATAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 418 81</canonical_bands>
                <polymorphic_bands>919 81</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCCAAAAATTCAAATAGTC</pcr_primer_p1>
		<pcr_primer_p2>TCGGTCTGAAAAATGAAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>440</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCCAAAAATTCAAATAGTCAGAATAAAAATTTGTCAGAAATTCTAAAATGCTGAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTTTAAAATTCTAAAATTCTAAAATTCTAAAATTCGGAAATTCGGAAGTTCTAAAATTTTAAAATTCTAAAATTCTAAAATTCTAAAATTTTAAAATTCTAAAATTCTAAAATTCTAAAATTCGGAAATTCAAATTTTTCCAGATTCCAAAACTGCACAAAAAATTGGAAAAACCGAAGAAAAATGGTTCGAAAAGTATCTGAAAAAGTGAGAAGGTTACTGTAAGTAAAATTTTAAAATAATTTCATTTTTCAGACCGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCCAAAAATTCAAATAGTCAGAATAAAAATTTGTCAGAAATTCTAAAATGCTGAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTCTAAAATTTTAAAATTCTAAAATTCTAAAATTCTAAAATTCGGAAATTCGGAAGTTCTAAAATTTTAAAATTCTAAAATTCTAAAATTCTAAAATTTTAAAATTCTAAAATTCTAAAATTCTAAAATTCGGAAATTCAAATTTTTCCAGATTCCAAAACTGCACAAAAAATTGGAAAAACCGAAGAAAAATGGTTCWAAAAGTATCTGAAAAAGTGAGAAGGTTACTGTAAGTAAAATTTTAAAATAATTTCATTTTTCAGACCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38319</snp_id>
        <super_contig>c012901526.Contig1</super_contig>
        <contig_pos>65039</contig_pos>
        <strand>+</strand>
        <context>ACAGTTTTTT[A/T]WATAAAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAAAGCCCACTATTTGCCATTTTTTAATTATTCTTTTTCACAGTTTTTT</left_flank>
        <right_flank>AATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTCGTTTTGGCAGTTTCATAACCTGAAAATTACATTTTAAAGTTGAATTTTCGTTTTTTCAGCACTTTTGAACTTGATTTCGAAAAAAATCGGAAAGATGATTATCAGTGGAGCGTGAATGCATTATCATTAAATAGCACTAGTTTTAAAATCATTTAATGTCAATTTCAGCCATTTTCAGTCTATTTGACAATTTTCAGCTCGTTTTTAGATTTTGTTTCCAATTTTCAGCCAAGACAATTCGCTTAAGATAGTTTTCGTTTTTATTTTTGCAAAATTTGGCAATTTTCAGCATATTTTTGAATTATTTCAAGAAAAAGAAACATCTTTTTCTGAAATATCAAAATTTAAATTCTGAATTTAACACTATCAAAATCCTACAAAATTTTTTTTATTTTCTATCAAATTGTGCCATTTTCAGCCCTTTTTTGAACGTATTCAGGTCATTTCAAAGCCCACTATTTGCCATTTTTTAATTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCACAAGGATTTGCGTTTATGTCATTTTGATGAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTT</canonical>
            <polymorphic>GTTCGTTTTGGCAGTTTCATAACCTGAAAATTACATTTTAAAGTTGAATTTTCGTTTTTTCAGCACTTTTGAACTTGATTTCGAAAAAAATCGGAAAGATGATTATCAGTGGAGCGTGAATGCATTATCATTAAATAGCACTAGTTTTAAAATCATTTAATGTCAATTTCAGCCATTTTCAGTCTATTTGACAATTTTCAGCTCGTTTTTAGATTTTGTTTCCAATTTTCAGCCAAGACAATTCGCTTAAGATAGTTTTCGTTTTTATTTTTGCAAAATTTGGCAATTTTCAGCATATTTTTGAATTATTTCAAGAAAAAGAAACATCTTTTTCTGAAATATCAAAATTTAAATTCTGAATTTAACACTATCAAAATCCTACAAAATTTTTTTTATTTTCTATCAAATTGTGCCATTTTCAGCCCTTTTTTGAACGTATTCAGGTCATTTCAAAGCCCACTATTTGCCATTTTTTAATTATTCTTTTTCACAGTTTTTTWAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCACAAGGATTTGCGTTTATGTCATTTTGATGAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>403 202 149 109 98 39</canonical_bands>
                <polymorphic_bands>552 202 109 98 39</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>403 112 102 99 93 90 38 24 16 13 10</canonical_bands>
                <polymorphic_bands>427 112 102 99 93 90 38 16 13 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGTATTCAGGTCATTTCAAAG</pcr_primer_p1>
		<pcr_primer_p2>GTGGACTGAATTAGATGTTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACGTATTCAGGTCATTTCAAAGCCCACTATTTGCCATTTTTTAATTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCAC</canonical_amplicon>
		<polymorphic_amplicon>ACGTATTCAGGTCATTTCAAAGCCCACTATTTGCCATTTTTTAATTATTCTTTTTCACAGTTTTTTWAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38320</snp_id>
        <super_contig>c012901526.Contig1</super_contig>
        <contig_pos>65404</contig_pos>
        <strand>+</strand>
        <context>TGTTCAGAAT[A/T]TTTGAATTGY</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAAT</left_flank>
        <right_flank>TTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACTATCAAAATCCTACAAAATTTTTTTTATTTTCTATCAAATTGTGCCATTTTCAGCCCTTTTTTGAACGTATTCAGGTCATTTCAAAGCCCACTATTTGCCATTTTTTAATTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCACAAGGATTTGCGTTTATGTCATTTTGATGAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAGTTTTTTGGCGTTTTCAGAATTTTTGAATTTCGAGAGTTTTGAAAATTTGGAATTTCGAAATTTCTTAATTTCTCAGAATTACCGACTTTTTAGAAATTCTCAATTTTTTACAGTTTTAAAAATTTTGGAATTTCAAAATTTCTGAATTTCTGAACTTTTTTTTATTTAAAAAATTTCCAAATTGCGAAAGTTTCAAATTCTTGTAGATTTAGATTTTTGCTAGATTCTTCACTTGACATGACTCACTTGGATGCAAATGGCACGACGCCGTCGTCGGCGTGTTCCCACGCGGGACCTCTTTCTCTGCTTCTCT</canonical>
            <polymorphic>CACTATCAAAATCCTACAAAATTTTTTTTATTTTCTATCAAATTGTGCCATTTTCAGCCCTTTTTTGAACGTATTCAGGTCATTTCAAAGCCCACTATTTGCCATTTTTTAATTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCACAAGGATTTGCGTTTATGTCATTTTGATGAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATWTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAGTTTTTTGGCGTTTTCAGAATTTTTGAATTTCGAGAGTTTTGAAAATTTGGAATTTCGAAATTTCTTAATTTCTCAGAATTACCGACTTTTTAGAAATTCTCAATTTTTTACAGTTTTAAAAATTTTGGAATTTCAAAATTTCTGAATTTCTGAACTTTTTTTTATTTAAAAAATTTCCAAATTGCGAAAGTTTCAAATTCTTGTAGATTTAGATTTTTGCTAGATTCTTCACTTGACATGACTCACTTGGATGCAAATGGCACGACGCCGTCGTCGGCGTGTTCCCACGCGGGACCTCTTTCTCTGCTTCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>235 121 118 93 65 49 40 36 27 26 26 24 19 18 17 13 9 9 8 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>235 121 118 114 93 40 36 27 26 26 24 19 18 17 13 9 9 8 8 8 8 8 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>125 118 110 70 51 42 41 40 36 30 27 26 24 21 19 19 18 18 17 16 13 10 9 9 8 8 8 8 8 8 8 8 8 7 7 5</canonical_bands>
                <polymorphic_bands>125 118 110 70 51 42 41 40 36 32 30 27 26 21 19 19 18 18 17 16 13 10 9 9 8 8 8 8 8 8 8 8 7 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATAGGAAGGATTACTGTCACC</pcr_primer_p1>
		<pcr_primer_p2>TGTCGTTTTTCAGTAGATCAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACA</canonical_amplicon>
		<polymorphic_amplicon>GAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATWTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38321</snp_id>
        <super_contig>c012901526.Contig1</super_contig>
        <contig_pos>65414</contig_pos>
        <strand>+</strand>
        <context>WTTTGAATTG[C/T]AARAAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTG</left_flank>
        <right_flank>AAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCTACAAAATTTTTTTTATTTTCTATCAAATTGTGCCATTTTCAGCCCTTTTTTGAACGTATTCAGGTCATTTCAAAGCCCACTATTTGCCATTTTTTAATTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCACAAGGATTTGCGTTTATGTCATTTTGATGAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAGTTTTTTGGCGTTTTCAGAATTTTTGAATTTCGAGAGTTTTGAAAATTTGGAATTTCGAAATTTCTTAATTTCTCAGAATTACCGACTTTTTAGAAATTCTCAATTTTTTACAGTTTTAAAAATTTTGGAATTTCAAAATTTCTGAATTTCTGAACTTTTTTTTATTTAAAAAATTTCCAAATTGCGAAAGTTTCAAATTCTTGTAGATTTAGATTTTTGCTAGATTCTTCACTTGACATGACTCACTTGGATGCAAATGGCACGACGCCGTCGTCGGCGTGTTCCCACGCGGGACCTCTTTCTCTGCTTCTCTGCGTCTCTCT</canonical>
            <polymorphic>ATCCTACAAAATTTTTTTTATTTTCTATCAAATTGTGCCATTTTCAGCCCTTTTTTGAACGTATTCAGGTCATTTCAAAGCCCACTATTTGCCATTTTTTAATTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCACAAGGATTTGCGTTTATGTCATTTTGATGAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGYAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAGTTTTTTGGCGTTTTCAGAATTTTTGAATTTCGAGAGTTTTGAAAATTTGGAATTTCGAAATTTCTTAATTTCTCAGAATTACCGACTTTTTAGAAATTCTCAATTTTTTACAGTTTTAAAAATTTTGGAATTTCAAAATTTCTGAATTTCTGAACTTTTTTTTATTTAAAAAATTTCCAAATTGCGAAAGTTTCAAATTCTTGTAGATTTAGATTTTTGCTAGATTCTTCACTTGACATGACTCACTTGGATGCAAATGGCACGACGCCGTCGTCGGCGTGTTCCCACGCGGGACCTCTTTCTCTGCTTCTCTGCGTCTCTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATAGGAAGGATTACTGTCACC</pcr_primer_p1>
		<pcr_primer_p2>TGTCGTTTTTCAGTAGATCAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACA</canonical_amplicon>
		<polymorphic_amplicon>GAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGYAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38322</snp_id>
        <super_contig>c012901526.Contig1</super_contig>
        <contig_pos>65417</contig_pos>
        <strand>+</strand>
        <context>TGAATTGYAA[A/G]AAAAAAACCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAA</left_flank>
        <right_flank>AAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACAAAATTTTTTTTATTTTCTATCAAATTGTGCCATTTTCAGCCCTTTTTTGAACGTATTCAGGTCATTTCAAAGCCCACTATTTGCCATTTTTTAATTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCACAAGGATTTGCGTTTATGTCATTTTGATGAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAGTTTTTTGGCGTTTTCAGAATTTTTGAATTTCGAGAGTTTTGAAAATTTGGAATTTCGAAATTTCTTAATTTCTCAGAATTACCGACTTTTTAGAAATTCTCAATTTTTTACAGTTTTAAAAATTTTGGAATTTCAAAATTTCTGAATTTCTGAACTTTTTTTTATTTAAAAAATTTCCAAATTGCGAAAGTTTCAAATTCTTGTAGATTTAGATTTTTGCTAGATTCTTCACTTGACATGACTCACTTGGATGCAAATGGCACGACGCCGTCGTCGGCGTGTTCCCACGCGGGACCTCTTTCTCTGCTTCTCTGCGTCTCTCTCAT</canonical>
            <polymorphic>CTACAAAATTTTTTTTATTTTCTATCAAATTGTGCCATTTTCAGCCCTTTTTTGAACGTATTCAGGTCATTTCAAAGCCCACTATTTGCCATTTTTTAATTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCACAAGGATTTGCGTTTATGTCATTTTGATGAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAARAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAGTTTTTTGGCGTTTTCAGAATTTTTGAATTTCGAGAGTTTTGAAAATTTGGAATTTCGAAATTTCTTAATTTCTCAGAATTACCGACTTTTTAGAAATTCTCAATTTTTTACAGTTTTAAAAATTTTGGAATTTCAAAATTTCTGAATTTCTGAACTTTTTTTTATTTAAAAAATTTCCAAATTGCGAAAGTTTCAAATTCTTGTAGATTTAGATTTTTGCTAGATTCTTCACTTGACATGACTCACTTGGATGCAAATGGCACGACGCCGTCGTCGGCGTGTTCCCACGCGGGACCTCTTTCTCTGCTTCTCTGCGTCTCTCTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATAGGAAGGATTACTGTCACC</pcr_primer_p1>
		<pcr_primer_p2>TGTCGTTTTTCAGTAGATCAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACA</canonical_amplicon>
		<polymorphic_amplicon>GAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAARAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38323</snp_id>
        <super_contig>c012901526.Contig1</super_contig>
        <contig_pos>65432</contig_pos>
        <strand></strand>
        <context>AAACCAAACA[T/A]ATATTATTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACA</left_flank>
        <right_flank>ATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTTCTATCAAATTGTGCCATTTTCAGCCCTTTTTTGAACGTATTCAGGTCATTTCAAAGCCCACTATTTGCCATTTTTTAATTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCACAAGGATTTGCGTTTATGTCATTTTGATGAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAGTTTTTTGGCGTTTTCAGAATTTTTGAATTTCGAGAGTTTTGAAAATTTGGAATTTCGAAATTTCTTAATTTCTCAGAATTACCGACTTTTTAGAAATTCTCAATTTTTTACAGTTTTAAAAATTTTGGAATTTCAAAATTTCTGAATTTCTGAACTTTTTTTTATTTAAAAAATTTCCAAATTGCGAAAGTTTCAAATTCTTGTAGATTTAGATTTTTGCTAGATTCTTCACTTGACATGACTCACTTGGATGCAAATGGCACGACGCCGTCGTCGGCGTGTTCCCACGCGGGACCTCTTTCTCTGCTTCTCTGCGTCTCTCTCATCCGAATACTCTCTCG</canonical>
            <polymorphic>TATTTTCTATCAAATTGTGCCATTTTCAGCCCTTTTTTGAACGTATTCAGGTCATTTCAAAGCCCACTATTTGCCATTTTTTAATTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCACAAGGATTTGCGTTTATGTCATTTTGATGAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACAWATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAGTTTTTTGGCGTTTTCAGAATTTTTGAATTTCGAGAGTTTTGAAAATTTGGAATTTCGAAATTTCTTAATTTCTCAGAATTACCGACTTTTTAGAAATTCTCAATTTTTTACAGTTTTAAAAATTTTGGAATTTCAAAATTTCTGAATTTCTGAACTTTTTTTTATTTAAAAAATTTCCAAATTGCGAAAGTTTCAAATTCTTGTAGATTTAGATTTTTGCTAGATTCTTCACTTGACATGACTCACTTGGATGCAAATGGCACGACGCCGTCGTCGGCGTGTTCCCACGCGGGACCTCTTTCTCTGCTTCTCTGCGTCTCTCTCATCCGAATACTCTCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATAGGAAGGATTACTGTCACC</pcr_primer_p1>
		<pcr_primer_p2>TGTCGTTTTTCAGTAGATCAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACA</canonical_amplicon>
		<polymorphic_amplicon>GAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACAWATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38324</snp_id>
        <super_contig>c012901526.Contig1</super_contig>
        <contig_pos>65455</contig_pos>
        <strand></strand>
        <context>AATTGAATTT[T/C]GAAAGTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTT</left_flank>
        <right_flank>GAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAGCCCTTTTTTGAACGTATTCAGGTCATTTCAAAGCCCACTATTTGCCATTTTTTAATTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCACAAGGATTTGCGTTTATGTCATTTTGATGAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAGTTTTTTGGCGTTTTCAGAATTTTTGAATTTCGAGAGTTTTGAAAATTTGGAATTTCGAAATTTCTTAATTTCTCAGAATTACCGACTTTTTAGAAATTCTCAATTTTTTACAGTTTTAAAAATTTTGGAATTTCAAAATTTCTGAATTTCTGAACTTTTTTTTATTTAAAAAATTTCCAAATTGCGAAAGTTTCAAATTCTTGTAGATTTAGATTTTTGCTAGATTCTTCACTTGACATGACTCACTTGGATGCAAATGGCACGACGCCGTCGTCGGCGTGTTCCCACGCGGGACCTCTTTCTCTGCTTCTCTGCGTCTCTCTCATCCGAATACTCTCTCGCCTTCTTCATTCACCGTTAGCGC</canonical>
            <polymorphic>TTTCAGCCCTTTTTTGAACGTATTCAGGTCATTTCAAAGCCCACTATTTGCCATTTTTTAATTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCACAAGGATTTGCGTTTATGTCATTTTGATGAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTYGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAGTTTTTTGGCGTTTTCAGAATTTTTGAATTTCGAGAGTTTTGAAAATTTGGAATTTCGAAATTTCTTAATTTCTCAGAATTACCGACTTTTTAGAAATTCTCAATTTTTTACAGTTTTAAAAATTTTGGAATTTCAAAATTTCTGAATTTCTGAACTTTTTTTTATTTAAAAAATTTCCAAATTGCGAAAGTTTCAAATTCTTGTAGATTTAGATTTTTGCTAGATTCTTCACTTGACATGACTCACTTGGATGCAAATGGCACGACGCCGTCGTCGGCGTGTTCCCACGCGGGACCTCTTTCTCTGCTTCTCTGCGTCTCTCTCATCCGAATACTCTCTCGCCTTCTTCATTCACCGTTAGCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATTTCTGGAAACCTTATAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTGCTCAAACTATCTAAACATTG</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAG</canonical_amplicon>
		<polymorphic_amplicon>AGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTYGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38325</snp_id>
        <super_contig>c012901526.Contig1</super_contig>
        <contig_pos>65472</contig_pos>
        <strand>+</strand>
        <context>TTTTGATCTA[C/T]TGAAATTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTA</left_flank>
        <right_flank>TGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGTATTCAGGTCATTTCAAAGCCCACTATTTGCCATTTTTTAATTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCACAAGGATTTGCGTTTATGTCATTTTGATGAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAGTTTTTTGGCGTTTTCAGAATTTTTGAATTTCGAGAGTTTTGAAAATTTGGAATTTCGAAATTTCTTAATTTCTCAGAATTACCGACTTTTTAGAAATTCTCAATTTTTTACAGTTTTAAAAATTTTGGAATTTCAAAATTTCTGAATTTCTGAACTTTTTTTTATTTAAAAAATTTCCAAATTGCGAAAGTTTCAAATTCTTGTAGATTTAGATTTTTGCTAGATTCTTCACTTGACATGACTCACTTGGATGCAAATGGCACGACGCCGTCGTCGGCGTGTTCCCACGCGGGACCTCTTTCTCTGCTTCTCTGCGTCTCTCTCATCCGAATACTCTCTCGCCTTCTTCATTCACCGTTAGCGCTCTTTCTTCTTCTTCTT</canonical>
            <polymorphic>ACGTATTCAGGTCATTTCAAAGCCCACTATTTGCCATTTTTTAATTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCACAAGGATTTGCGTTTATGTCATTTTGATGAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTAYTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAGTTTTTTGGCGTTTTCAGAATTTTTGAATTTCGAGAGTTTTGAAAATTTGGAATTTCGAAATTTCTTAATTTCTCAGAATTACCGACTTTTTAGAAATTCTCAATTTTTTACAGTTTTAAAAATTTTGGAATTTCAAAATTTCTGAATTTCTGAACTTTTTTTTATTTAAAAAATTTCCAAATTGCGAAAGTTTCAAATTCTTGTAGATTTAGATTTTTGCTAGATTCTTCACTTGACATGACTCACTTGGATGCAAATGGCACGACGCCGTCGTCGGCGTGTTCCCACGCGGGACCTCTTTCTCTGCTTCTCTGCGTCTCTCTCATCCGAATACTCTCTCGCCTTCTTCATTCACCGTTAGCGCTCTTTCTTCTTCTTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATTTCTGGAAACCTTATAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTGCTCAAACTATCTAAACATTG</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAG</canonical_amplicon>
		<polymorphic_amplicon>AGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTAYTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38326</snp_id>
        <super_contig>c012901526.Contig1</super_contig>
        <contig_pos>65500</contig_pos>
        <strand>+</strand>
        <context>AAAAACGACA[A/C]CGATTTTTYA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACA</left_flank>
        <right_flank>CGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGCCATTTTTTAATTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCACAAGGATTTGCGTTTATGTCATTTTGATGAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAGTTTTTTGGCGTTTTCAGAATTTTTGAATTTCGAGAGTTTTGAAAATTTGGAATTTCGAAATTTCTTAATTTCTCAGAATTACCGACTTTTTAGAAATTCTCAATTTTTTACAGTTTTAAAAATTTTGGAATTTCAAAATTTCTGAATTTCTGAACTTTTTTTTATTTAAAAAATTTCCAAATTGCGAAAGTTTCAAATTCTTGTAGATTTAGATTTTTGCTAGATTCTTCACTTGACATGACTCACTTGGATGCAAATGGCACGACGCCGTCGTCGGCGTGTTCCCACGCGGGACCTCTTTCTCTGCTTCTCTGCGTCTCTCTCATCCGAATACTCTCTCGCCTTCTTCATTCACCGTTAGCGCTCTTTCTTCTTCTTCTTTTCGCTTTTACCTTCTTTTTTGTTGCGT</canonical>
            <polymorphic>ATTTGCCATTTTTTAATTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCACAAGGATTTGCGTTTATGTCATTTTGATGAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAMCGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAGTTTTTTGGCGTTTTCAGAATTTTTGAATTTCGAGAGTTTTGAAAATTTGGAATTTCGAAATTTCTTAATTTCTCAGAATTACCGACTTTTTAGAAATTCTCAATTTTTTACAGTTTTAAAAATTTTGGAATTTCAAAATTTCTGAATTTCTGAACTTTTTTTTATTTAAAAAATTTCCAAATTGCGAAAGTTTCAAATTCTTGTAGATTTAGATTTTTGCTAGATTCTTCACTTGACATGACTCACTTGGATGCAAATGGCACGACGCCGTCGTCGGCGTGTTCCCACGCGGGACCTCTTTCTCTGCTTCTCTGCGTCTCTCTCATCCGAATACTCTCTCGCCTTCTTCATTCACCGTTAGCGCTCTTTCTTCTTCTTCTTTTCGCTTTTACCTTCTTTTTTGTTGCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATTTCTGGAAACCTTATAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTGCTCAAACTATCTAAACATTG</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAG</canonical_amplicon>
		<polymorphic_amplicon>AGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAMCGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38327</snp_id>
        <super_contig>c012901526.Contig1</super_contig>
        <contig_pos>65509</contig_pos>
        <strand>+</strand>
        <context>AMCGATTTTT[C/T]ATCTCMMATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTT</left_flank>
        <right_flank>ATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTAATTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCACAAGGATTTGCGTTTATGTCATTTTGATGAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAGTTTTTTGGCGTTTTCAGAATTTTTGAATTTCGAGAGTTTTGAAAATTTGGAATTTCGAAATTTCTTAATTTCTCAGAATTACCGACTTTTTAGAAATTCTCAATTTTTTACAGTTTTAAAAATTTTGGAATTTCAAAATTTCTGAATTTCTGAACTTTTTTTTATTTAAAAAATTTCCAAATTGCGAAAGTTTCAAATTCTTGTAGATTTAGATTTTTGCTAGATTCTTCACTTGACATGACTCACTTGGATGCAAATGGCACGACGCCGTCGTCGGCGTGTTCCCACGCGGGACCTCTTTCTCTGCTTCTCTGCGTCTCTCTCATCCGAATACTCTCTCGCCTTCTTCATTCACCGTTAGCGCTCTTTCTTCTTCTTCTTTTCGCTTTTACCTTCTTTTTTGTTGCGTCTTTTTTTT</canonical>
            <polymorphic>TTTTTAATTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCACAAGGATTTGCGTTTATGTCATTTTGATGAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTYATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAGTTTTTTGGCGTTTTCAGAATTTTTGAATTTCGAGAGTTTTGAAAATTTGGAATTTCGAAATTTCTTAATTTCTCAGAATTACCGACTTTTTAGAAATTCTCAATTTTTTACAGTTTTAAAAATTTTGGAATTTCAAAATTTCTGAATTTCTGAACTTTTTTTTATTTAAAAAATTTCCAAATTGCGAAAGTTTCAAATTCTTGTAGATTTAGATTTTTGCTAGATTCTTCACTTGACATGACTCACTTGGATGCAAATGGCACGACGCCGTCGTCGGCGTGTTCCCACGCGGGACCTCTTTCTCTGCTTCTCTGCGTCTCTCTCATCCGAATACTCTCTCGCCTTCTTCATTCACCGTTAGCGCTCTTTCTTCTTCTTCTTTTCGCTTTTACCTTCTTTTTTGTTGCGTCTTTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATTTCTGGAAACCTTATAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTGCTCAAACTATCTAAACATTG</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAG</canonical_amplicon>
		<polymorphic_amplicon>AGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTYATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38328</snp_id>
        <super_contig>c012901526.Contig1</super_contig>
        <contig_pos>65515</contig_pos>
        <strand>+</strand>
        <context>TTTTYATCTC[A/C]MATTTTTTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTC</left_flank>
        <right_flank>AATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCACAAGGATTTGCGTTTATGTCATTTTGATGAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAGTTTTTTGGCGTTTTCAGAATTTTTGAATTTCGAGAGTTTTGAAAATTTGGAATTTCGAAATTTCTTAATTTCTCAGAATTACCGACTTTTTAGAAATTCTCAATTTTTTACAGTTTTAAAAATTTTGGAATTTCAAAATTTCTGAATTTCTGAACTTTTTTTTATTTAAAAAATTTCCAAATTGCGAAAGTTTCAAATTCTTGTAGATTTAGATTTTTGCTAGATTCTTCACTTGACATGACTCACTTGGATGCAAATGGCACGACGCCGTCGTCGGCGTGTTCCCACGCGGGACCTCTTTCTCTGCTTCTCTGCGTCTCTCTCATCCGAATACTCTCTCGCCTTCTTCATTCACCGTTAGCGCTCTTTCTTCTTCTTCTTTTCGCTTTTACCTTCTTTTTTGTTGCGTCTTTTTTTTTGTCTA</canonical>
            <polymorphic>ATTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCACAAGGATTTGCGTTTATGTCATTTTGATGAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCMAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAGTTTTTTGGCGTTTTCAGAATTTTTGAATTTCGAGAGTTTTGAAAATTTGGAATTTCGAAATTTCTTAATTTCTCAGAATTACCGACTTTTTAGAAATTCTCAATTTTTTACAGTTTTAAAAATTTTGGAATTTCAAAATTTCTGAATTTCTGAACTTTTTTTTATTTAAAAAATTTCCAAATTGCGAAAGTTTCAAATTCTTGTAGATTTAGATTTTTGCTAGATTCTTCACTTGACATGACTCACTTGGATGCAAATGGCACGACGCCGTCGTCGGCGTGTTCCCACGCGGGACCTCTTTCTCTGCTTCTCTGCGTCTCTCTCATCCGAATACTCTCTCGCCTTCTTCATTCACCGTTAGCGCTCTTTCTTCTTCTTCTTTTCGCTTTTACCTTCTTTTTTGTTGCGTCTTTTTTTTTGTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>235 229 93 65 49 40 36 29 27 26 26 24 18 17 13 9 9 8 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>235 229 133 65 49 36 29 27 26 26 24 18 17 13 9 9 8 8 8 8 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATTTCTGGAAACCTTATAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTGCTCAAACTATCTAAACATTG</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAG</canonical_amplicon>
		<polymorphic_amplicon>AGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCMAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38329</snp_id>
        <super_contig>c012901526.Contig1</super_contig>
        <contig_pos>65516</contig_pos>
        <strand>+</strand>
        <context>TTTYATCTCM[A/C]ATTTTTTATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCA</left_flank>
        <right_flank>ATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCACAAGGATTTGCGTTTATGTCATTTTGATGAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAGTTTTTTGGCGTTTTCAGAATTTTTGAATTTCGAGAGTTTTGAAAATTTGGAATTTCGAAATTTCTTAATTTCTCAGAATTACCGACTTTTTAGAAATTCTCAATTTTTTACAGTTTTAAAAATTTTGGAATTTCAAAATTTCTGAATTTCTGAACTTTTTTTTATTTAAAAAATTTCCAAATTGCGAAAGTTTCAAATTCTTGTAGATTTAGATTTTTGCTAGATTCTTCACTTGACATGACTCACTTGGATGCAAATGGCACGACGCCGTCGTCGGCGTGTTCCCACGCGGGACCTCTTTCTCTGCTTCTCTGCGTCTCTCTCATCCGAATACTCTCTCGCCTTCTTCATTCACCGTTAGCGCTCTTTCTTCTTCTTCTTTTCGCTTTTACCTTCTTTTTTGTTGCGTCTTTTTTTTTGTCTAT</canonical>
            <polymorphic>TTATTCTTTTTCACAGTTTTTTAAATAAAATTTCCTCTCGAAATTCTCCAAATTTTGGTGGCTTAGAAATTCAAAACAAAACTAGTCCCCCTTATTATTCTGGAACGTCTCTAGAGCAGCAAAAGTGGGAATATGCTCTCGAAGAAGCTTTGGAATCTTTAGATTTATGACTTTTCCATTAGTCAAACATCTAATTCAGTCCACAAGGATTTGCGTTTATGTCATTTTGATGAATAGGAAGGATTACTGTCACCTGCCTTCTCTTCTTATCACACTTGCAAAATGCGTCGGACCATTTTTTGAATTTCAAAATTTCCAGAATTTCATGAAGTTCATGAGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAMATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAGTTTTTTGGCGTTTTCAGAATTTTTGAATTTCGAGAGTTTTGAAAATTTGGAATTTCGAAATTTCTTAATTTCTCAGAATTACCGACTTTTTAGAAATTCTCAATTTTTTACAGTTTTAAAAATTTTGGAATTTCAAAATTTCTGAATTTCTGAACTTTTTTTTATTTAAAAAATTTCCAAATTGCGAAAGTTTCAAATTCTTGTAGATTTAGATTTTTGCTAGATTCTTCACTTGACATGACTCACTTGGATGCAAATGGCACGACGCCGTCGTCGGCGTGTTCCCACGCGGGACCTCTTTCTCTGCTTCTCTGCGTCTCTCTCATCCGAATACTCTCTCGCCTTCTTCATTCACCGTTAGCGCTCTTTCTTCTTCTTCTTTTCGCTTTTACCTTCTTTTTTGTTGCGTCTTTTTTTTTGTCTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>235 230 93 65 49 40 36 28 27 26 26 24 18 17 13 9 9 8 8 8 8 8 8 7</canonical_bands>
                <polymorphic_bands>235 230 133 65 49 36 28 27 26 26 24 18 17 13 9 9 8 8 8 8 8 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>230 125 110 51 42 41 40 36 28 27 26 24 19 18 18 17 16 13 10 9 9 8 8 8 8 8 8 8 8 8 7 7 5</canonical_bands>
                <polymorphic_bands>230 125 110 82 51 41 36 28 27 26 24 19 18 18 17 16 13 10 9 9 8 8 8 8 8 8 8 8 8 7 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGATTTCTGGAAACCTTATAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTGCTCAAACTATCTAAACATTG</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>AGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAAATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAG</canonical_amplicon>
		<polymorphic_amplicon>AGATTTCTGGAAACCTTATAAAAAATTACAGGTTACTGTATGTTCAGAATTTTTGAATTGAAAGAAAAAAACCAAACATATATTATTTAAAAATTGAATTTTGAAAGTTTTTGATCTATTGAAATTTGATCTACTGAAAAACGACAACGATTTTTTATCTCAMATTTTTTATATTTACACGGCGTTTTCATTGATTTTCCAGCCAATTTTCAGACAATGTTTAGATAGTTTGAGCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38330</snp_id>
        <super_contig>c012901526.Contig1</super_contig>
        <contig_pos>67305</contig_pos>
        <strand>+</strand>
        <context>ATTTTTCTGT[A/G]TTTTATGGCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGATACTCGATGACAAGGCGCCGAATATTTTGGTGAGCATTTTTCTGT</left_flank>
        <right_flank>TTTTATGGCCTAGATTCGGGGATTTTGGAGACCTAAATATCTAAAATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTTAGGTATTCCGGAATTGTTTCTTAATAAGAATTTGGCATCCCGCCAAAAAGTTTTTTCTTCTCTTCTCGTTTTTTTTCTCTCACTGTCTGCGTCTCTTGTCTCTTTTTTTTCTCTCTTAACCTCCCCGAAAAATATTGGCATCACTTTTTTGTTTTCATTGAAAAAAATTTCTGTGGGATTTTCGATTTTTTTGGAACTTTTTTCGAGAAATTCTTCTTTTTTTTAGAATAATCCTTCTTCAATCCAATTAGAAAAATGAGAAATTTTGGAAATTCTCAATGGAGCGCGTTTGCTTCTTTCTCTTAACTTGAAAAAGTTTCATTTTCAATGGAGCGCACTTGAAATTTTTTTCTCTAAAAATATTTTTTTTCTCAGCAAAATGTTGGCGAATGGACCAAAATTGAAACATACGGACACGAATTGCGGGTTATTCAACTATGAACGAATGATACTCGATGACAAGGCGCCGAATATTTTGGTGAGCATTTTTCTGTTTTTTATGGCCTAGATTCGGGGATTTTGGAGACCTAAATATCTAAAATTTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTTAGAATTTTCGATTTTTTGTTTTTTTTTCTAGAATTTTAGAACTTTAGAATATTAGAATTTTTAGGACTTTTAAAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAGTTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTAGAAATGAT</canonical>
            <polymorphic>AGTTTAGGTATTCCGGAATTGTTTCTTAATAAGAATTTGGCATCCCGCCAAAAAGTTTTTTCTTCTCTTCTCGTTTTTTTTCTCTCACTGTCTGCGTCTCTTGTCTCTTTTTTTTCTCTCTTAACCTCCCCGAAAAATATTGGCATCACTTTTTTGTTTTCATTGAAAAAAATTTCTGTGGGATTTTCGATTTTTTTGGAACTTTTTTCGAGAAATTCTTCTTTTTTTTAGAATAATCCTTCTTCAATCCAATTAGAAAAATGAGAAATTTTGGAAATTCTCAATGGAGCGCGTTTGCTTCTTTCTCTTAACTTGAAAAAGTTTCATTTTCAATGGAGCGCACTTGAAATTTTTTTCTCTAAAAATATTTTTTTTCTCAGCAAAATGTTGGCGAATGGACCAAAATTGAAACATACGGACACGAATTGCGGGTTATTCAACTATGAACGAATGATACTCGATGACAAGGCGCCGAATATTTTGGTGAGCATTTTTCTGTRTTTTATGGCCTAGATTCGGGGATTTTGGAGACCTAAATATCTAAAATTTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTTAGAATTTTCGATTTTTTGTTTTTTTTTCTAGAATTTTAGAACTTTAGAATATTAGAATTTTTAGGACTTTTAAAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAGTTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTAGAAATGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAATGATACTCGATGACAAG</pcr_primer_p1>
		<pcr_primer_p2>TTGAACCAAGTTTTGATCATTT</pcr_primer_p2>
		<pcr_amplicon_size>568</pcr_amplicon_size>
		<canonical_amplicon>CGAATGATACTCGATGACAAGGCGCCGAATATTTTGGTGAGCATTTTTCTGTTTTTTATGGCCTAGATTCGGGG</canonical_amplicon>
		<polymorphic_amplicon>CGAATGATACTCGATGACAAGGCGCCGAATATTTTGGTGAGCATTTTTCTGTRTTTTATGGCCTAGATTCGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38331</snp_id>
        <super_contig>c012901526.Contig1</super_contig>
        <contig_pos>67324</contig_pos>
        <strand>+</strand>
        <context>CCTAGATTCG[A/G]GGATTTTGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCGCCGAATATTTTGGTGAGCATTTTTCTGTTTTTTATGGCCTAGATTCG</left_flank>
        <right_flank>GGATTTTGGAGACCTAAATATCTAAAATTTTAAAATTTTAGAATTTTAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTTCTTAATAAGAATTTGGCATCCCGCCAAAAAGTTTTTTCTTCTCTTCTCGTTTTTTTTCTCTCACTGTCTGCGTCTCTTGTCTCTTTTTTTTCTCTCTTAACCTCCCCGAAAAATATTGGCATCACTTTTTTGTTTTCATTGAAAAAAATTTCTGTGGGATTTTCGATTTTTTTGGAACTTTTTTCGAGAAATTCTTCTTTTTTTTAGAATAATCCTTCTTCAATCCAATTAGAAAAATGAGAAATTTTGGAAATTCTCAATGGAGCGCGTTTGCTTCTTTCTCTTAACTTGAAAAAGTTTCATTTTCAATGGAGCGCACTTGAAATTTTTTTCTCTAAAAATATTTTTTTTCTCAGCAAAATGTTGGCGAATGGACCAAAATTGAAACATACGGACACGAATTGCGGGTTATTCAACTATGAACGAATGATACTCGATGACAAGGCGCCGAATATTTTGGTGAGCATTTTTCTGTTTTTTATGGCCTAGATTCGGGGATTTTGGAGACCTAAATATCTAAAATTTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTTAGAATTTTCGATTTTTTGTTTTTTTTTCTAGAATTTTAGAACTTTAGAATATTAGAATTTTTAGGACTTTTAAAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAGTTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTAGAAATGATCAAAACTTGGTTCAATTTT</canonical>
            <polymorphic>TGTTTCTTAATAAGAATTTGGCATCCCGCCAAAAAGTTTTTTCTTCTCTTCTCGTTTTTTTTCTCTCACTGTCTGCGTCTCTTGTCTCTTTTTTTTCTCTCTTAACCTCCCCGAAAAATATTGGCATCACTTTTTTGTTTTCATTGAAAAAAATTTCTGTGGGATTTTCGATTTTTTTGGAACTTTTTTCGAGAAATTCTTCTTTTTTTTAGAATAATCCTTCTTCAATCCAATTAGAAAAATGAGAAATTTTGGAAATTCTCAATGGAGCGCGTTTGCTTCTTTCTCTTAACTTGAAAAAGTTTCATTTTCAATGGAGCGCACTTGAAATTTTTTTCTCTAAAAATATTTTTTTTCTCAGCAAAATGTTGGCGAATGGACCAAAATTGAAACATACGGACACGAATTGCGGGTTATTCAACTATGAACGAATGATACTCGATGACAAGGCGCCGAATATTTTGGTGAGCATTTTTCTGTTTTTTATGGCCTAGATTCGRGGATTTTGGAGACCTAAATATCTAAAATTTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTTAGAATTTTCGATTTTTTGTTTTTTTTTCTAGAATTTTAGAACTTTAGAATATTAGAATTTTTAGGACTTTTAAAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAGTTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTAGAAATGATCAAAACTTGGTTCAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAATGATACTCGATGACAAG</pcr_primer_p1>
		<pcr_primer_p2>TTGAACCAAGTTTTGATCATTT</pcr_primer_p2>
		<pcr_amplicon_size>568</pcr_amplicon_size>
		<canonical_amplicon>CGAATGATACTCGATGACAAGGCGCCGAATATTTTGGTGAGCATTTTTCTGTTTTTTATGGCCTAGATTCGGGGATTTTGGAGACCTAAATATCTAAAATTTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTTAGAATTTTCGATTTTTTGTTTTTTTTTCTAGAATTTTAGAACTTTAGAATATTAGAATTTTTAGGACTTTTAAAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAGTTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTAGAAATGATCAAAACTTGGTTCAA</canonical_amplicon>
		<polymorphic_amplicon>CGAATGATACTCGATGACAAGGCGCCGAATATTTTGGTGAGCATTTTTCTGTTTTTTATGGCCTAGATTCGRGGATTTTGGAGACCTAAATATCTAAAATTTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTTAGAATTTTCGATTTTTTGTTTTTTTTTCTAGAATTTTAGAACTTTAGAATATTAGAATTTTTAGGACTTTTAAAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAGTTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTAGAAATGATCAAAACTTGGTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38332</snp_id>
        <super_contig>c012901526.Contig1</super_contig>
        <contig_pos>67356</contig_pos>
        <strand></strand>
        <context>CTAAAATTTT[A/G]AAATTTTAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTATGGCCTAGATTCGGGGATTTTGGAGACCTAAATATCTAAAATTTT</left_flank>
        <right_flank>AAATTTTAGAATTTTAGAGTTTTAGAATTTTAGAATTTTCGATTTTTTGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGTTTTTTCTTCTCTTCTCGTTTTTTTTCTCTCACTGTCTGCGTCTCTTGTCTCTTTTTTTTCTCTCTTAACCTCCCCGAAAAATATTGGCATCACTTTTTTGTTTTCATTGAAAAAAATTTCTGTGGGATTTTCGATTTTTTTGGAACTTTTTTCGAGAAATTCTTCTTTTTTTTAGAATAATCCTTCTTCAATCCAATTAGAAAAATGAGAAATTTTGGAAATTCTCAATGGAGCGCGTTTGCTTCTTTCTCTTAACTTGAAAAAGTTTCATTTTCAATGGAGCGCACTTGAAATTTTTTTCTCTAAAAATATTTTTTTTCTCAGCAAAATGTTGGCGAATGGACCAAAATTGAAACATACGGACACGAATTGCGGGTTATTCAACTATGAACGAATGATACTCGATGACAAGGCGCCGAATATTTTGGTGAGCATTTTTCTGTTTTTTATGGCCTAGATTCGGGGATTTTGGAGACCTAAATATCTAAAATTTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTTAGAATTTTCGATTTTTTGTTTTTTTTTCTAGAATTTTAGAACTTTAGAATATTAGAATTTTTAGGACTTTTAAAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAGTTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTAGAAATGATCAAAACTTGGTTCAATTTTTTCAAAAATAAAAATTTTCAGCTACACTGGAC</canonical>
            <polymorphic>AAAGTTTTTTCTTCTCTTCTCGTTTTTTTTCTCTCACTGTCTGCGTCTCTTGTCTCTTTTTTTTCTCTCTTAACCTCCCCGAAAAATATTGGCATCACTTTTTTGTTTTCATTGAAAAAAATTTCTGTGGGATTTTCGATTTTTTTGGAACTTTTTTCGAGAAATTCTTCTTTTTTTTAGAATAATCCTTCTTCAATCCAATTAGAAAAATGAGAAATTTTGGAAATTCTCAATGGAGCGCGTTTGCTTCTTTCTCTTAACTTGAAAAAGTTTCATTTTCAATGGAGCGCACTTGAAATTTTTTTCTCTAAAAATATTTTTTTTCTCAGCAAAATGTTGGCGAATGGACCAAAATTGAAACATACGGACACGAATTGCGGGTTATTCAACTATGAACGAATGATACTCGATGACAAGGCGCCGAATATTTTGGTGAGCATTTTTCTGTTTTTTATGGCCTAGATTCGGGGATTTTGGAGACCTAAATATCTAAAATTTTRAAATTTTAGAATTTTAGAGTTTTAGAATTTTAGAATTTTCGATTTTTTGTTTTTTTTTCTAGAATTTTAGAACTTTAGAATATTAGAATTTTTAGGACTTTTAAAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAGTTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTAGAAATGATCAAAACTTGGTTCAATTTTTTCAAAAATAAAAATTTTCAGCTACACTGGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 398 103</canonical_bands>
                <polymorphic_bands>602 398</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>399 241 187 103 70</canonical_bands>
                <polymorphic_bands>399 344 187 70</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATATTTTGGTGAGCATTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTGAACCAAGTTTTGATCATTT</pcr_primer_p2>
		<pcr_amplicon_size>541</pcr_amplicon_size>
		<canonical_amplicon>AATATTTTGGTGAGCATTTTTCTGTTTTTTATGGCCTAGATTCGGGGATTTTGGAGACCTAAATATCTAAAATTTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTTAGAATTTTCGATTTTTTGTTTTTTTTTCTAGAATTTTAGAACTTTAGAATATTAGAATTTTTAGGACTTTTAAAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAGTTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTAGAAATGATCAAAACTTGGTTCAA</canonical_amplicon>
		<polymorphic_amplicon>AATATTTTGGTGAGCATTTTTCTGTTTTTTATGGCCTAGATTCGGGGATTTTGGAGACCTAAATATCTAAAATTTTRAAATTTTAGAATTTTAGAGTTTTAGAATTTTAGAATTTTCGATTTTTTGTTTTTTTTTCTAGAATTTTAGAACTTTAGAATATTAGAATTTTTAGGACTTTTAAAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAGTTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTAGAAATGATCAAAACTTGGTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38333</snp_id>
        <super_contig>c012901526.Contig1</super_contig>
        <contig_pos>67412</contig_pos>
        <strand>+</strand>
        <context>TTTGTTTTTT[C/T]TTCTAGAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAGAATTTTAGAGTTTTAGAATTTTAGAATTTTCGATTTTTTGTTTTTT</left_flank>
        <right_flank>TTCTAGAATTTTAGAACTTTAGAATATTAGAATTTTTAGGACTTTTAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTTTCTCTCTTAACCTCCCCGAAAAATATTGGCATCACTTTTTTGTTTTCATTGAAAAAAATTTCTGTGGGATTTTCGATTTTTTTGGAACTTTTTTCGAGAAATTCTTCTTTTTTTTAGAATAATCCTTCTTCAATCCAATTAGAAAAATGAGAAATTTTGGAAATTCTCAATGGAGCGCGTTTGCTTCTTTCTCTTAACTTGAAAAAGTTTCATTTTCAATGGAGCGCACTTGAAATTTTTTTCTCTAAAAATATTTTTTTTCTCAGCAAAATGTTGGCGAATGGACCAAAATTGAAACATACGGACACGAATTGCGGGTTATTCAACTATGAACGAATGATACTCGATGACAAGGCGCCGAATATTTTGGTGAGCATTTTTCTGTTTTTTATGGCCTAGATTCGGGGATTTTGGAGACCTAAATATCTAAAATTTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTTAGAATTTTCGATTTTTTGTTTTTTTTTCTAGAATTTTAGAACTTTAGAATATTAGAATTTTTAGGACTTTTAAAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAGTTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTAGAAATGATCAAAACTTGGTTCAATTTTTTCAAAAATAAAAATTTTCAGCTACACTGGACCCTCACCACAAAAACGACGCCTCGAATTGTGCTTCGACCCAGCTATCGCTATATTT</canonical>
            <polymorphic>TTTTTTTTCTCTCTTAACCTCCCCGAAAAATATTGGCATCACTTTTTTGTTTTCATTGAAAAAAATTTCTGTGGGATTTTCGATTTTTTTGGAACTTTTTTCGAGAAATTCTTCTTTTTTTTAGAATAATCCTTCTTCAATCCAATTAGAAAAATGAGAAATTTTGGAAATTCTCAATGGAGCGCGTTTGCTTCTTTCTCTTAACTTGAAAAAGTTTCATTTTCAATGGAGCGCACTTGAAATTTTTTTCTCTAAAAATATTTTTTTTCTCAGCAAAATGTTGGCGAATGGACCAAAATTGAAACATACGGACACGAATTGCGGGTTATTCAACTATGAACGAATGATACTCGATGACAAGGCGCCGAATATTTTGGTGAGCATTTTTCTGTTTTTTATGGCCTAGATTCGGGGATTTTGGAGACCTAAATATCTAAAATTTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTTAGAATTTTCGATTTTTTGTTTTTTYTTCTAGAATTTTAGAACTTTAGAATATTAGAATTTTTAGGACTTTTAAAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAGTTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTAGAAATGATCAAAACTTGGTTCAATTTTTTCAAAAATAAAAATTTTCAGCTACACTGGACCCTCACCACAAAAACGACGCCTCGAATTGTGCTTCGACCCAGCTATCGCTATATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATTTTGGTGAGCATTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTGAACCAAGTTTTGATCATTT</pcr_primer_p2>
		<pcr_amplicon_size>541</pcr_amplicon_size>
		<canonical_amplicon>AATATTTTGGTGAGCATTTTTCTGTTTTTTATGGCCTAGATTCGGGGATTTTGGAGACCTAAATATCTAAAATTTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTTAGAATTTTCGATTTTTTGTTTTTTTTTCTAGAATTTTAGAACTTTAGAATATTAGAATTTTTAGGACTTTTAAAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAGTTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTAGAAATGATCAAAACTTGGTTCAA</canonical_amplicon>
		<polymorphic_amplicon>AATATTTTGGTGAGCATTTTTCTGTTTTTTATGGCCTAGATTCGGGGATTTTGGAGACCTAAATATCTAAAATTTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTTAGAATTTTCGATTTTTTGTTTTTTYTTCTAGAATTTTAGAACTTTAGAATATTAGAATTTTTAGGACTTTTAAAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAGTTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTAGAAATGATCAAAACTTGGTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38334</snp_id>
        <super_contig>c012901526.Contig1</super_contig>
        <contig_pos>67429</contig_pos>
        <strand></strand>
        <context>AATTTTAGAA[C/A]TTTAGAYTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TAGAATTTTAGAATTTTCGATTTTTTGTTTTTTTTTCTAGAATTTTAGAA</left_flank>
        <right_flank>TTTAGAATATTAGAATTTTTAGGACTTTTAAAATTTTAGAATTTTAGAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCCCCGAAAAATATTGGCATCACTTTTTTGTTTTCATTGAAAAAAATTTCTGTGGGATTTTCGATTTTTTTGGAACTTTTTTCGAGAAATTCTTCTTTTTTTTAGAATAATCCTTCTTCAATCCAATTAGAAAAATGAGAAATTTTGGAAATTCTCAATGGAGCGCGTTTGCTTCTTTCTCTTAACTTGAAAAAGTTTCATTTTCAATGGAGCGCACTTGAAATTTTTTTCTCTAAAAATATTTTTTTTCTCAGCAAAATGTTGGCGAATGGACCAAAATTGAAACATACGGACACGAATTGCGGGTTATTCAACTATGAACGAATGATACTCGATGACAAGGCGCCGAATATTTTGGTGAGCATTTTTCTGTTTTTTATGGCCTAGATTCGGGGATTTTGGAGACCTAAATATCTAAAATTTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTTAGAATTTTCGATTTTTTGTTTTTTTTTCTAGAATTTTAGAACTTTAGAATATTAGAATTTTTAGGACTTTTAAAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAGTTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTAGAAATGATCAAAACTTGGTTCAATTTTTTCAAAAATAAAAATTTTCAGCTACACTGGACCCTCACCACAAAAACGACGCCTCGAATTGTGCTTCGACCCAGCTATCGCTATATTTTTCCAAATGAAATTTCA</canonical>
            <polymorphic>CCTCCCCGAAAAATATTGGCATCACTTTTTTGTTTTCATTGAAAAAAATTTCTGTGGGATTTTCGATTTTTTTGGAACTTTTTTCGAGAAATTCTTCTTTTTTTTAGAATAATCCTTCTTCAATCCAATTAGAAAAATGAGAAATTTTGGAAATTCTCAATGGAGCGCGTTTGCTTCTTTCTCTTAACTTGAAAAAGTTTCATTTTCAATGGAGCGCACTTGAAATTTTTTTCTCTAAAAATATTTTTTTTCTCAGCAAAATGTTGGCGAATGGACCAAAATTGAAACATACGGACACGAATTGCGGGTTATTCAACTATGAACGAATGATACTCGATGACAAGGCGCCGAATATTTTGGTGAGCATTTTTCTGTTTTTTATGGCCTAGATTCGGGGATTTTGGAGACCTAAATATCTAAAATTTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTTAGAATTTTCGATTTTTTGTTTTTTTTTCTAGAATTTTAGAAMTTTAGAATATTAGAATTTTTAGGACTTTTAAAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAGTTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTAGAAATGATCAAAACTTGGTTCAATTTTTTCAAAAATAAAAATTTTCAGCTACACTGGACCCTCACCACAAAAACGACGCCTCGAATTGTGCTTCGACCCAGCTATCGCTATATTTTTCCAAATGAAATTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATTTTGGTGAGCATTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTGAACCAAGTTTTGATCATTT</pcr_primer_p2>
		<pcr_amplicon_size>541</pcr_amplicon_size>
		<canonical_amplicon>AATATTTTGGTGAGCATTTTTCTGTTTTTTATGGCCTAGATTCGGGGATTTTGGAGACCTAAATATCTAAAATTTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTTAGAATTTTCGATTTTTTGTTTTTTTTTCTAGAATTTTAGAACTTTAGAATATTAGAATTTTTAGGACTTTTAAAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAGTTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTAGAAATGATCAAAACTTGGTTCAA</canonical_amplicon>
		<polymorphic_amplicon>AATATTTTGGTGAGCATTTTTCTGTTTTTTATGGCCTAGATTCGGGGATTTTGGAGACCTAAATATCTAAAATTTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTTAGAATTTTCGATTTTTTGTTTTTTTTTCTAGAATTTTAGAAMTTTAGAATATTAGAATTTTTAGGACTTTTAAAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAGTTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTAGAAATGATCAAAACTTGGTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38335</snp_id>
        <super_contig>c012901526.Contig1</super_contig>
        <contig_pos>67436</contig_pos>
        <strand>+</strand>
        <context>GAAMTTTAGA[C/T]TATTAGAATM</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAGAATTTTCGATTTTTTGTTTTTTTTTCTAGAATTTTAGAACTTTAGA</left_flank>
        <right_flank>TATTAGAATTTTTAGGACTTTTAAAATTTTAGAATTTTAGAATTTTAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAATATTGGCATCACTTTTTTGTTTTCATTGAAAAAAATTTCTGTGGGATTTTCGATTTTTTTGGAACTTTTTTCGAGAAATTCTTCTTTTTTTTAGAATAATCCTTCTTCAATCCAATTAGAAAAATGAGAAATTTTGGAAATTCTCAATGGAGCGCGTTTGCTTCTTTCTCTTAACTTGAAAAAGTTTCATTTTCAATGGAGCGCACTTGAAATTTTTTTCTCTAAAAATATTTTTTTTCTCAGCAAAATGTTGGCGAATGGACCAAAATTGAAACATACGGACACGAATTGCGGGTTATTCAACTATGAACGAATGATACTCGATGACAAGGCGCCGAATATTTTGGTGAGCATTTTTCTGTTTTTTATGGCCTAGATTCGGGGATTTTGGAGACCTAAATATCTAAAATTTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTTAGAATTTTCGATTTTTTGTTTTTTTTTCTAGAATTTTAGAACTTTAGAATATTAGAATTTTTAGGACTTTTAAAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAGTTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTAGAAATGATCAAAACTTGGTTCAATTTTTTCAAAAATAAAAATTTTCAGCTACACTGGACCCTCACCACAAAAACGACGCCTCGAATTGTGCTTCGACCCAGCTATCGCTATATTTTTCCAAATGAAATTTCAAAAGGAA</canonical>
            <polymorphic>GAAAAATATTGGCATCACTTTTTTGTTTTCATTGAAAAAAATTTCTGTGGGATTTTCGATTTTTTTGGAACTTTTTTCGAGAAATTCTTCTTTTTTTTAGAATAATCCTTCTTCAATCCAATTAGAAAAATGAGAAATTTTGGAAATTCTCAATGGAGCGCGTTTGCTTCTTTCTCTTAACTTGAAAAAGTTTCATTTTCAATGGAGCGCACTTGAAATTTTTTTCTCTAAAAATATTTTTTTTCTCAGCAAAATGTTGGCGAATGGACCAAAATTGAAACATACGGACACGAATTGCGGGTTATTCAACTATGAACGAATGATACTCGATGACAAGGCGCCGAATATTTTGGTGAGCATTTTTCTGTTTTTTATGGCCTAGATTCGGGGATTTTGGAGACCTAAATATCTAAAATTTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTTAGAATTTTCGATTTTTTGTTTTTTTTTCTAGAATTTTAGAACTTTAGAYTATTAGAATTTTTAGGACTTTTAAAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAGTTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTAGAAATGATCAAAACTTGGTTCAATTTTTTCAAAAATAAAAATTTTCAGCTACACTGGACCCTCACCACAAAAACGACGCCTCGAATTGTGCTTCGACCCAGCTATCGCTATATTTTTCCAAATGAAATTTCAAAAGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 228 155 111 7</canonical_bands>
                <polymorphic_bands>654 228 111 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATATTTTGGTGAGCATTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTGAACCAAGTTTTGATCATTT</pcr_primer_p2>
		<pcr_amplicon_size>541</pcr_amplicon_size>
		<canonical_amplicon>AATATTTTGGTGAGCATTTTTCTGTTTTTTATGGCCTAGATTCGGGGATTTTGGAGACCTAAATATCTAAAATTTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTTAGAATTTTCGATTTTTTGTTTTTTTTTCTAGAATTTTAGAACTTTAGAATATTAGAATTTTTAGGACTTTTAAAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAGTTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTAGAAATGATCAAAACTTGGTTCAA</canonical_amplicon>
		<polymorphic_amplicon>AATATTTTGGTGAGCATTTTTCTGTTTTTTATGGCCTAGATTCGGGGATTTTGGAGACCTAAATATCTAAAATTTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTTAGAATTTTCGATTTTTTGTTTTTTTTTCTAGAATTTTAGAACTTTAGAYTATTAGAATTTTTAGGACTTTTAAAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAGTTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTAGAAATGATCAAAACTTGGTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38336</snp_id>
        <super_contig>c012901526.Contig1</super_contig>
        <contig_pos>67446</contig_pos>
        <strand>+</strand>
        <context>YTATTAGAAT[A/C]TTTAGGACTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGATTTTTTGTTTTTTTTTCTAGAATTTTAGAACTTTAGAATATTAGAAT</left_flank>
        <right_flank>TTTAGGACTTTTAAAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCATCACTTTTTTGTTTTCATTGAAAAAAATTTCTGTGGGATTTTCGATTTTTTTGGAACTTTTTTCGAGAAATTCTTCTTTTTTTTAGAATAATCCTTCTTCAATCCAATTAGAAAAATGAGAAATTTTGGAAATTCTCAATGGAGCGCGTTTGCTTCTTTCTCTTAACTTGAAAAAGTTTCATTTTCAATGGAGCGCACTTGAAATTTTTTTCTCTAAAAATATTTTTTTTCTCAGCAAAATGTTGGCGAATGGACCAAAATTGAAACATACGGACACGAATTGCGGGTTATTCAACTATGAACGAATGATACTCGATGACAAGGCGCCGAATATTTTGGTGAGCATTTTTCTGTTTTTTATGGCCTAGATTCGGGGATTTTGGAGACCTAAATATCTAAAATTTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTTAGAATTTTCGATTTTTTGTTTTTTTTTCTAGAATTTTAGAACTTTAGAATATTAGAATTTTTAGGACTTTTAAAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAGTTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTAGAAATGATCAAAACTTGGTTCAATTTTTTCAAAAATAAAAATTTTCAGCTACACTGGACCCTCACCACAAAAACGACGCCTCGAATTGTGCTTCGACCCAGCTATCGCTATATTTTTCCAAATGAAATTTCAAAAGGAAAATGCAAATA</canonical>
            <polymorphic>GGCATCACTTTTTTGTTTTCATTGAAAAAAATTTCTGTGGGATTTTCGATTTTTTTGGAACTTTTTTCGAGAAATTCTTCTTTTTTTTAGAATAATCCTTCTTCAATCCAATTAGAAAAATGAGAAATTTTGGAAATTCTCAATGGAGCGCGTTTGCTTCTTTCTCTTAACTTGAAAAAGTTTCATTTTCAATGGAGCGCACTTGAAATTTTTTTCTCTAAAAATATTTTTTTTCTCAGCAAAATGTTGGCGAATGGACCAAAATTGAAACATACGGACACGAATTGCGGGTTATTCAACTATGAACGAATGATACTCGATGACAAGGCGCCGAATATTTTGGTGAGCATTTTTCTGTTTTTTATGGCCTAGATTCGGGGATTTTGGAGACCTAAATATCTAAAATTTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTTAGAATTTTCGATTTTTTGTTTTTTTTTCTAGAATTTTAGAACTTTAGAATATTAGAATMTTTAGGACTTTTAAAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAGTTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTAGAAATGATCAAAACTTGGTTCAATTTTTTCAAAAATAAAAATTTTCAGCTACACTGGACCCTCACCACAAAAACGACGCCTCGAATTGTGCTTCGACCCAGCTATCGCTATATTTTTCCAAATGAAATTTCAAAAGGAAAATGCAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>197 86 72 53 46 43 29 29 24 24 24 18 17 17 16 16 16 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>197 86 72 53 46 43 42 29 29 24 24 17 17 16 16 16 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>121 72 56 44 43 42 37 29 29 28 24 24 24 20 18 18 17 17 16 16 16 16 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>121 72 56 44 43 42 42 37 29 29 28 24 24 20 18 17 17 16 16 16 16 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATATTTTGGTGAGCATTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTGAACCAAGTTTTGATCATTT</pcr_primer_p2>
		<pcr_amplicon_size>541</pcr_amplicon_size>
		<canonical_amplicon>AATATTTTGGTGAGCATTTTTCTGTTTTTTATGGCCTAGATTCGGGGATTTTGGAGACCTAAATATCTAAAATTTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTTAGAATTTTCGATTTTTTGTTTTTTTTTCTAGAATTTTAGAACTTTAGAATATTAGAATTTTTAGGACTTTTAAAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAGTTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTAGAAATGATCAAAACTTGGTTCAA</canonical_amplicon>
		<polymorphic_amplicon>AATATTTTGGTGAGCATTTTTCTGTTTTTTATGGCCTAGATTCGGGGATTTTGGAGACCTAAATATCTAAAATTTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTTAGAATTTTCGATTTTTTGTTTTTTTTTCTAGAATTTTAGAACTTTAGAATATTAGAATMTTTAGGACTTTTAAAATTTTAGAATTTTAGAATTTTAGAGTTTTAGAGTTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTAGGATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTTGAGTTTCAGAATTTTTGAATTTTTGAATTTTAGAAATGATCAAAACTTGGTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38337</snp_id>
        <super_contig>c012901526.Contig1</super_contig>
        <contig_pos>69608</contig_pos>
        <strand></strand>
        <context>aaaaagtagt[G/A]aaccgataaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AACTTTGACCCAATTTATCTGGGTTACTGTAACAGGTATCAAAAAGTAGT</left_flank>
        <right_flank>AACCGATAAAATGTTGCTGATAATATGGTAAACGTTTTATCAGTTGACAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGGATCAAAGGACAAATTCCACAAGCACACAGTACGATTTCAGTCGCCGATTTTGTCGATTTTTTGGGAGAATTGGATTGTAATAAGTCGCTGGTTACGGTAGGTCACCTTTTTTGCGGCATAGCTAACTTAAAAATTTGAGTTTTTAAACTAGCTAAAATGGATAATGTCGATCTTGTGAAGTTCTACAAAATTATATAAAATTTGTTTCAAAATGTTGAGTTTGAAGAAAATTATGAGTTGCTATATGTATTTTCACACTTTGAGCCAATTTATCTTGGTTTTTATGAGAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATAATATCACAAATATTTTATCAGTTGACAACTTTTTGATATCTATCAGAGAAACTGAGATAAGTCAAGTCAAAGTTGTACGGTCGGCAGCTGTTGGCTAAGCCTGCCGACTCCCCCTTAACTTTGACCCAATTTATCTGGGTTACTGTAACAGGTATCAAAAAGTAGTGAACCGATAAAATGTTGCTGATAATATGGTAAACGTTTTATCAGTTGACAAAATTTTGATATCTGTCACAGGAACATAGATAAATTGGATCAAAGTTGGAAGAATAGGTTTAACGGTACATGCCACACAGTCTAACGCTGCTTCTCCAAAATTAGGACAATTCTGAACTTTTTGAAATTTTCAGATTGTCGAAGATGCTCCACACTTGTCAACAAAAAACGAAATGGTTGAGGGTTTCGGATACATTCGTACATGTACACCGTACGCCGAACCAGCCATGGACCATATTCAAGCCATCTTCTTCACATTTCATTGTCTTGTGAACGGTGTCAACTGGACCAAAGAAGACTGTTTGGATCATAAGACATGCCTGCCAAGACTCAAAAAAGCGATTTTTGCATTGTTGAAGAAATGGGCCGGGTTGAATAAGGTGAGTTTTGGGGGAGGAAAGAAATGGGCGAGCTACGCGGTCACTTGTTGACTTTGAGCTAATTTATCTCG</canonical>
            <polymorphic>AATGGATCAAAGGACAAATTCCACAAGCACACAGTACGATTTCAGTCGCCGATTTTGTCGATTTTTTGGGAGAATTGGATTGTAATAAGTCGCTGGTTACGGTAGGTCACCTTTTTTGCGGCATAGCTAACTTAAAAATTTGAGTTTTTAAACTAGCTAAAATGGATAATGTCGATCTTGTGAAGTTCTACAAAATTATATAAAATTTGTTTCAAAATGTTGAGTTTGAAGAAAATTATGAGTTGCTATATGTATTTTCACACTTTGAGCCAATTTATCTTGGTTTTTATGAGAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATAATATCACAAATATTTTATCAGTTGACAACTTTTTGATATCTATCAGAGAAACTGAGATAAGTCAAGTCAAAGTTGTACGGTCGGCAGCTGTTGGCTAAGCCTGCCGACTCCCCCTTAACTTTGACCCAATTTATCTGGGTTACTGTAACAGGTATCAAAAAGTAGTRAACCGATAAAATGTTGCTGATAATATGGTAAACGTTTTATCAGTTGACAAAATTTTGATATCTGTCACAGGAACATAGATAAATTGGATCAAAGTTGGAAGAATAGGTTTAACGGTACATGCCACACAGTCTAACGCTGCTTCTCCAAAATTAGGACAATTCTGAACTTTTTGAAATTTTCAGATTGTCGAAGATGCTCCACACTTGTCAACAAAAAACGAAATGGTTGAGGGTTTCGGATACATTCGTACATGTACACCGTACGCCGAACCAGCCATGGACCATATTCAAGCCATCTTCTTCACATTTCATTGTCTTGTGAACGGTGTCAACTGGACCAAAGAAGACTGTTTGGATCATAAGACATGCCTGCCAAGACTCAAAAAAGCGATTTTTGCATTGTTGAAGAAATGGGCCGGGTTGAATAAGGTGAGTTTTGGGGGAGGAAAGAAATGGGCGAGCTACGCGGTCACTTGTTGACTTTGAGCTAATTTATCTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>161 104 78 78 75 73 67 57 55 46 46 40 31 28 23 17 7 6 2 2 2 2</canonical_bands>
                <polymorphic_bands>228 104 78 78 75 73 57 55 46 46 40 31 28 23 17 7 6 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAGAAAATTATGAGTTGCTATATGT</pcr_primer_p1>
		<pcr_primer_p2>CATGTACCGTTAAACCTATTCTT</pcr_primer_p2>
		<pcr_amplicon_size>394</pcr_amplicon_size>
		<canonical_amplicon>GAAGAAAATTATGAGTTGCTATATGTATTTTCACACTTTGAGCCAATTTATCTTGGTTTTTATGAGAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATAATATCACAAATATTTTATCAGTTGACAACTTTTTGATATCTATCAGAGAAACTGAGATAAGTCAAGTCAAAGTTGTACGGTCGGCAGCTGTTGGCTAAGCCTGCCGACTCCCCCTTAACTTTGACCCAATTTATCTGGGTTACTGTAACAGGTATCAAAAAGTAGTGAACCGATAAAATGTTGCTGATAATATGGTAAACGTTTTATCAGTTGACAAAATTTTGATATCTGTCACAGGAACATAGATAAATTGGATCAAAGTTGGAAGAATAGGTTTAACGGTACATG</canonical_amplicon>
		<polymorphic_amplicon>GAAGAAAATTATGAGTTGCTATATGTATTTTCACACTTTGAGCCAATTTATCTTGGTTTTTATGAGAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATAATATCACAAATATTTTATCAGTTGACAACTTTTTGATATCTATCAGAGAAACTGAGATAAGTCAAGTCAAAGTTGTACGGTCGGCAGCTGTTGGCTAAGCCTGCCGACTCCCCCTTAACTTTGACCCAATTTATCTGGGTTACTGTAACAGGTATCAAAAAGTAGTRAACCGATAAAATGTTGCTGATAATATGGTAAACGTTTTATCAGTTGACAAAATTTTGATATCTGTCACAGGAACATAGATAAATTGGATCAAAGTTGGAAGAATAGGTTTAACGGTACATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38338</snp_id>
        <super_contig>c012901526.Contig1</super_contig>
        <contig_pos>69664</contig_pos>
        <strand></strand>
        <context>gacaaaattt[T/G]gatatctgtc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATAAAATGTTGCTGATAATATGGTAAACGTTTTATCAGTTGACAAAATTT</left_flank>
        <right_flank>GATATCTGTCACAGGAACATAGATAAATTGGATCAAAGTTGGAAGAATAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCGATTTTTTGGGAGAATTGGATTGTAATAAGTCGCTGGTTACGGTAGGTCACCTTTTTTGCGGCATAGCTAACTTAAAAATTTGAGTTTTTAAACTAGCTAAAATGGATAATGTCGATCTTGTGAAGTTCTACAAAATTATATAAAATTTGTTTCAAAATGTTGAGTTTGAAGAAAATTATGAGTTGCTATATGTATTTTCACACTTTGAGCCAATTTATCTTGGTTTTTATGAGAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATAATATCACAAATATTTTATCAGTTGACAACTTTTTGATATCTATCAGAGAAACTGAGATAAGTCAAGTCAAAGTTGTACGGTCGGCAGCTGTTGGCTAAGCCTGCCGACTCCCCCTTAACTTTGACCCAATTTATCTGGGTTACTGTAACAGGTATCAAAAAGTAGTGAACCGATAAAATGTTGCTGATAATATGGTAAACGTTTTATCAGTTGACAAAATTTTGATATCTGTCACAGGAACATAGATAAATTGGATCAAAGTTGGAAGAATAGGTTTAACGGTACATGCCACACAGTCTAACGCTGCTTCTCCAAAATTAGGACAATTCTGAACTTTTTGAAATTTTCAGATTGTCGAAGATGCTCCACACTTGTCAACAAAAAACGAAATGGTTGAGGGTTTCGGATACATTCGTACATGTACACCGTACGCCGAACCAGCCATGGACCATATTCAAGCCATCTTCTTCACATTTCATTGTCTTGTGAACGGTGTCAACTGGACCAAAGAAGACTGTTTGGATCATAAGACATGCCTGCCAAGACTCAAAAAAGCGATTTTTGCATTGTTGAAGAAATGGGCCGGGTTGAATAAGGTGAGTTTTGGGGGAGGAAAGAAATGGGCGAGCTACGCGGTCACTTGTTGACTTTGAGCTAATTTATCTCGGCTACTGTAAAAGATATCAAAACGTTGTCAACTAACAAAATGCTTATCATAATATT</canonical>
            <polymorphic>GTCGATTTTTTGGGAGAATTGGATTGTAATAAGTCGCTGGTTACGGTAGGTCACCTTTTTTGCGGCATAGCTAACTTAAAAATTTGAGTTTTTAAACTAGCTAAAATGGATAATGTCGATCTTGTGAAGTTCTACAAAATTATATAAAATTTGTTTCAAAATGTTGAGTTTGAAGAAAATTATGAGTTGCTATATGTATTTTCACACTTTGAGCCAATTTATCTTGGTTTTTATGAGAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATAATATCACAAATATTTTATCAGTTGACAACTTTTTGATATCTATCAGAGAAACTGAGATAAGTCAAGTCAAAGTTGTACGGTCGGCAGCTGTTGGCTAAGCCTGCCGACTCCCCCTTAACTTTGACCCAATTTATCTGGGTTACTGTAACAGGTATCAAAAAGTAGTGAACCGATAAAATGTTGCTGATAATATGGTAAACGTTTTATCAGTTGACAAAATTTKGATATCTGTCACAGGAACATAGATAAATTGGATCAAAGTTGGAAGAATAGGTTTAACGGTACATGCCACACAGTCTAACGCTGCTTCTCCAAAATTAGGACAATTCTGAACTTTTTGAAATTTTCAGATTGTCGAAGATGCTCCACACTTGTCAACAAAAAACGAAATGGTTGAGGGTTTCGGATACATTCGTACATGTACACCGTACGCCGAACCAGCCATGGACCATATTCAAGCCATCTTCTTCACATTTCATTGTCTTGTGAACGGTGTCAACTGGACCAAAGAAGACTGTTTGGATCATAAGACATGCCTGCCAAGACTCAAAAAAGCGATTTTTGCATTGTTGAAGAAATGGGCCGGGTTGAATAAGGTGAGTTTTGGGGGAGGAAAGAAATGGGCGAGCTACGCGGTCACTTGTTGACTTTGAGCTAATTTATCTCGGCTACTGTAAAAGATATCAAAACGTTGTCAACTAACAAAATGCTTATCATAATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGAAAATTATGAGTTGCTATATGT</pcr_primer_p1>
		<pcr_primer_p2>CATGTACCGTTAAACCTATTCTT</pcr_primer_p2>
		<pcr_amplicon_size>394</pcr_amplicon_size>
		<canonical_amplicon>GAAGAAAATTATGAGTTGCTATATGTATTTTCACACTTTGAGCCAATTTATCTTGGTTTTTATGAGAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATAATATCACAAATATTTTATCAGTTGACAACTTTTTGATATCTATCAGAGAAACTGAGATAAGTCAAGTCAAAGTTGTACGGTCGGCAGCTGTTGGCTAAGCCTGCCGACTCCCCCTTAACTTTGACCCAATTTATCTGGGTTACTGTAACAGGTATCAAAAAGTAGTGAACCGATAAAATGTTGCTGATAATATGGTAAACGTTTTATCAGTTGACAAAATTTTGATATCTGTCACAGGAACATAGATAAATTGGATCAAAGTTGGAAGAATAGGTTTAACGGTACATG</canonical_amplicon>
		<polymorphic_amplicon>GAAGAAAATTATGAGTTGCTATATGTATTTTCACACTTTGAGCCAATTTATCTTGGTTTTTATGAGAGATATCAAAAAGTGGTCAACTGATAAAATGTTTATCATAATATCACAAATATTTTATCAGTTGACAACTTTTTGATATCTATCAGAGAAACTGAGATAAGTCAAGTCAAAGTTGTACGGTCGGCAGCTGTTGGCTAAGCCTGCCGACTCCCCCTTAACTTTGACCCAATTTATCTGGGTTACTGTAACAGGTATCAAAAAGTAGTGAACCGATAAAATGTTGCTGATAATATGGTAAACGTTTTATCAGTTGACAAAATTTKGATATCTGTCACAGGAACATAGATAAATTGGATCAAAGTTGGAAGAATAGGTTTAACGGTACATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38339</snp_id>
        <super_contig>c012901526.Contig1</super_contig>
        <contig_pos>70119</contig_pos>
        <strand></strand>
        <context>gctactgtaa[A/G]agatatcaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTACGCGGTCACTTGTTGACTTTGAGCTAATTTATCTCGGCTACTGTAA</left_flank>
        <right_flank>AGATATCAAAACGTTGTCAACTAACAAAATGCTTATCATAATATTAGTAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTGCTGATAATATGGTAAACGTTTTATCAGTTGACAAAATTTTGATATCTGTCACAGGAACATAGATAAATTGGATCAAAGTTGGAAGAATAGGTTTAACGGTACATGCCACACAGTCTAACGCTGCTTCTCCAAAATTAGGACAATTCTGAACTTTTTGAAATTTTCAGATTGTCGAAGATGCTCCACACTTGTCAACAAAAAACGAAATGGTTGAGGGTTTCGGATACATTCGTACATGTACACCGTACGCCGAACCAGCCATGGACCATATTCAAGCCATCTTCTTCACATTTCATTGTCTTGTGAACGGTGTCAACTGGACCAAAGAAGACTGTTTGGATCATAAGACATGCCTGCCAAGACTCAAAAAAGCGATTTTTGCATTGTTGAAGAAATGGGCCGGGTTGAATAAGGTGAGTTTTGGGGGAGGAAAGAAATGGGCGAGCTACGCGGTCACTTGTTGACTTTGAGCTAATTTATCTCGGCTACTGTAAAAGATATCAAAACGTTGTCAACTAACAAAATGCTTATCATAATATTAGTAACATTTTATCAGTTGATAATTTTTTGATATCTCTGATACGAACCGAGATAATTTTACTCAAAGTGCAAAGTGCAAAGTCAACTCAAAATGCCGCCGCCTGAGCTACGCGGGCAGCTGCCAACTTGCTGACTTTGAGCCCATTTATCTCAGTCCCTGTAAAAGATATCAAAAAGTTGTCAACTAACGATATGCTTATGGTAATAATAGTCACAATTGATCAGTTGATAGTTCTCAGATATCTATCAGACGAACCTAGATAATTTTAATCATAGTNCAAAGGNTANAGTCNNNTNNAAANNNNNNCAGCAAGTTGGCAGCGGACGCTTGCCGCCTGAGCTACATGATCGGCTGCTCACTTTGACGCAAGTTATCTCATTTCCGGTAAAAGATATCCAAACGTTGTGAACTGATAAAATGTTTATCAGATTATCACTAAAACGACAAAAACAAG</canonical>
            <polymorphic>TGTTGCTGATAATATGGTAAACGTTTTATCAGTTGACAAAATTTTGATATCTGTCACAGGAACATAGATAAATTGGATCAAAGTTGGAAGAATAGGTTTAACGGTACATGCCACACAGTCTAACGCTGCTTCTCCAAAATTAGGACAATTCTGAACTTTTTGAAATTTTCAGATTGTCGAAGATGCTCCACACTTGTCAACAAAAAACGAAATGGTTGAGGGTTTCGGATACATTCGTACATGTACACCGTACGCCGAACCAGCCATGGACCATATTCAAGCCATCTTCTTCACATTTCATTGTCTTGTGAACGGTGTCAACTGGACCAAAGAAGACTGTTTGGATCATAAGACATGCCTGCCAAGACTCAAAAAAGCGATTTTTGCATTGTTGAAGAAATGGGCCGGGTTGAATAAGGTGAGTTTTGGGGGAGGAAAGAAATGGGCGAGCTACGCGGTCACTTGTTGACTTTGAGCTAATTTATCTCGGCTACTGTAARAGATATCAAAACGTTGTCAACTAACAAAATGCTTATCATAATATTAGTAACATTTTATCAGTTGATAATTTTTTGATATCTCTGATACGAACCGAGATAATTTTACTCAAAGTGCAAAGTGCAAAGTCAACTCAAAATGCCGCCGCCTGAGCTACGCGGGCAGCTGCCAACTTGCTGACTTTGAGCCCATTTATCTCAGTCCCTGTAAAAGATATCAAAAAGTTGTCAACTAACGATATGCTTATGGTAATAATAGTCACAATTGATCAGTTGATAGTTCTCAGATATCTATCAGACGAACCTAGATAATTTTAATCATAGTNCAAAGGNTANAGTCNNNTNNAAANNNNNNCAGCAAGTTGGCAGCGGACGCTTGCCGCCTGAGCTACATGATCGGCTGCTCACTTTGACGCAAGTTATCTCATTTCCGGTAAAAGATATCCAAACGTTGTGAACTGATAAAATGTTTATCAGATTATCACTAAAACGACAAAAACAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGTTGAATAAGGTGAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>GGCATTTTGAGTTGACTTTG</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>GGGTTGAATAAGGTGAGTTTTGGGGGAGGAAAGAAATGGGCGAGCTACGCGGTCACTTGTTGACTTTGAGCTAATTTATCTCGGCTACTGTAAAAGATATCAAAACGTTGTCAACTAACAAAATGCTTATCATAATATTAGTAACATTTTATCAGTTGATAATTTTTTGATATCTCTGATACGAACCGAGATAATTTTACTCAAAGTGCAAAGTGCAAAGTCAACTCAAAATGCC</canonical_amplicon>
		<polymorphic_amplicon>GGGTTGAATAAGGTGAGTTTTGGGGGAGGAAAGAAATGGGCGAGCTACGCGGTCACTTGTTGACTTTGAGCTAATTTATCTCGGCTACTGTAARAGATATCAAAACGTTGTCAACTAACAAAATGCTTATCATAATATTAGTAACATTTTATCAGTTGATAATTTTTTGATATCTCTGATACGAACCGAGATAATTTTACTCAAAGTGCAAAGTGCAAAGTCAACTCAAAATGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38340</snp_id>
        <super_contig>c013000986.Contig1</super_contig>
        <contig_pos>40933</contig_pos>
        <strand>+</strand>
        <context>TCCAAACTCA[A/C]YGCCGACTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGTTAACCTGAACCATTTCAGAATTCAACTTCCTATCGAATCCAAACTCA</left_flank>
        <right_flank>TGCCGACTGCCCTTCGAACCGTTCCACACCCCGCTACCCGTGTTTTTAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTTCTTCTTTCTCTTCTTCAAACTTTCTTCAAGCATTTTTACGCACAACCTTATTATTCAACTGTTTTCAGACTATCACTTGATAAGATGTCGTCGAACGCTGAAGCTATGGCTACCGCTTTCGAGCAAGACGGAGGACCGGTATGTTGATTTCGGAAAATTCAAAGCTTCCAAAATTGAGCAATAGATCAGGGTGCTATGCCACCTCCGGTCAAAACTCTGAACTTTTGGATGCCAAACTTGCTTTAGCCAAGATTTTTCTTTCAGGATCTCAGTGCCGGATCTGGAAAGCGTACCAAGGCCGAAAGAGTGGAGCACAAGCATTCCTCGCAACCAGGAGGCGACACTCGCAAGGTCGTTCAGACTGCCAGCAATGGAGAGGCCAAAAGAAAAGAGAAGTGGTGAGTGACCCAGACTGTGCACTTAGTGCGCGCGAGTGTTTACGTACCGTTAACCTGAACCATTTCAGAATTCAACTTCCTATCGAATCCAAACTCAATGCCGACTGCCCTTCGAACCGTTCCACACCCCGCTACCCGTGTTTTTAATTTCTTTTTTTACCCGTTTTTTGTAAAATTGTAAATGCCAGGCTAGCCTATCTAGCGACCAATTTTTGTAATGTTATTGTAAAAAGAACCCTGGCTATGTTCACTACTGAGTAATGCCTTTTCCACATCAACGCTTTTTCACTTTGAATAAACTTTTAAAAGAAGACACTGTACCACTGATCACACCGAATATCGTAATTTTCGAAAAATTGATACTTGAAAACTGATGTTATTGCTCAGCAAAACAGATGAATACCATATCCAAAGTTACGTTTCAGACAAATGTCTCGTCCTATTGGATATATCGGATACGAGTTTGGTGATGATGAAATGTTTATGCAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAACTGCATTAATTTTTCAGAGCAACAG</canonical>
            <polymorphic>CGTTCTTCTTTCTCTTCTTCAAACTTTCTTCAAGCATTTTTACGCACAACCTTATTATTCAACTGTTTTCAGACTATCACTTGATAAGATGTCGTCGAACGCTGAAGCTATGGCTACCGCTTTCGAGCAAGACGGAGGACCGGTATGTTGATTTCGGAAAATTCAAAGCTTCCAAAATTGAGCAATAGATCAGGGTGCTATGCCACCTCCGGTCAAAACTCTGAACTTTTGGATGCCAAACTTGCTTTAGCCAAGATTTTTCTTTCAGGATCTCAGTGCCGGATCTGGAAAGCGTACCAAGGCCGAAAGAGTGGAGCACAAGCATTCCTCGCAACCAGGAGGCGACACTCGCAAGGTCGTTCAGACTGCCAGCAATGGAGAGGCCAAAAGAAAAGAGAAGTGGTGAGTGACCCAGACTGTGCACTTAGTGCGCGCGAGTGTTTACGTACCGTTAACCTGAACCATTTCAGAATTCAACTTCCTATCGAATCCAAACTCAMTGCCGACTGCCCTTCGAACCGTTCCACACCCCGCTACCCGTGTTTTTAATTTCTTTTTTTACCCGTTTTTTGTAAAATTGTAAATGCCAGGCTAGCCTATCTAGCGACCAATTTTTGTAATGTTATTGTAAAAAGAACCCTGGCTATGTTCACTACTGAGTAATGCCTTTTCCACATCAACGCTTTTTCACTTTGAATAAACTTTTAAAAGAAGACACTGTACCACTGATCACACCGAATATCGTAATTTTCGAAAAATTGATACTTGAAAACTGATGTTATTGCTCAGCAAAACAGATGAATACCATATCCAAAGTTACGTTTCAGACAAATGTCTCGTCCTATTGGATATATCGGATACGAGTTTGGTGATGATGAAATGTTTATGCAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAACTGCATTAATTTTTCAGAGCAACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAAAAGAGAAGTGGTGAGT</pcr_primer_p1>
		<pcr_primer_p2>ACAATAACATTACAAAAATTGGTC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAAAAGAGAAGTGGTGAGTGACCCAGACTGTGCACTTAGTGCGCGCGAGTGTTTACGTACCGTTAACCTGAACCATTTCAGAATTCAACTTCCTATCGAATCCAAACTCAATGCCGACTGCCCTTCGAACCGTTCCACACCCCGCTACCCGTGTTTTTAATTTCTTTTTTTACCCGTTTTTTGTAAAATTGTAAATGCCAGGCTAGCCTATCTAGCGACCAATTTTTGTAATGTTATTGT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAAAAGAGAAGTGGTGAGTGACCCAGACTGTGCACTTAGTGCGCGCGAGTGTTTACGTACCGTTAACCTGAACCATTTCAGAATTCAACTTCCTATCGAATCCAAACTCAMTGCCGACTGCCCTTCGAACCGTTCCACACCCCGCTACCCGTGTTTTTAATTTCTTTTTTTACCCGTTTTTTGTAAAATTGTAAATGCCAGGCTAGCCTATCTAGCGACCAATTTTTGTAATGTTATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38341</snp_id>
        <super_contig>c013000986.Contig1</super_contig>
        <contig_pos>40934</contig_pos>
        <strand>+</strand>
        <context>CCAAACTCAM[C/T]GCCGACTGCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTAACCTGAACCATTTCAGAATTCAACTTCCTATCGAATCCAAACTCAA</left_flank>
        <right_flank>GCCGACTGCCCTTCGAACCGTTCCACACCCCGCTACCCGTGTTTTTAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCTTCTTTCTCTTCTTCAAACTTTCTTCAAGCATTTTTACGCACAACCTTATTATTCAACTGTTTTCAGACTATCACTTGATAAGATGTCGTCGAACGCTGAAGCTATGGCTACCGCTTTCGAGCAAGACGGAGGACCGGTATGTTGATTTCGGAAAATTCAAAGCTTCCAAAATTGAGCAATAGATCAGGGTGCTATGCCACCTCCGGTCAAAACTCTGAACTTTTGGATGCCAAACTTGCTTTAGCCAAGATTTTTCTTTCAGGATCTCAGTGCCGGATCTGGAAAGCGTACCAAGGCCGAAAGAGTGGAGCACAAGCATTCCTCGCAACCAGGAGGCGACACTCGCAAGGTCGTTCAGACTGCCAGCAATGGAGAGGCCAAAAGAAAAGAGAAGTGGTGAGTGACCCAGACTGTGCACTTAGTGCGCGCGAGTGTTTACGTACCGTTAACCTGAACCATTTCAGAATTCAACTTCCTATCGAATCCAAACTCAATGCCGACTGCCCTTCGAACCGTTCCACACCCCGCTACCCGTGTTTTTAATTTCTTTTTTTACCCGTTTTTTGTAAAATTGTAAATGCCAGGCTAGCCTATCTAGCGACCAATTTTTGTAATGTTATTGTAAAAAGAACCCTGGCTATGTTCACTACTGAGTAATGCCTTTTCCACATCAACGCTTTTTCACTTTGAATAAACTTTTAAAAGAAGACACTGTACCACTGATCACACCGAATATCGTAATTTTCGAAAAATTGATACTTGAAAACTGATGTTATTGCTCAGCAAAACAGATGAATACCATATCCAAAGTTACGTTTCAGACAAATGTCTCGTCCTATTGGATATATCGGATACGAGTTTGGTGATGATGAAATGTTTATGCAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAACTGCATTAATTTTTCAGAGCAACAGA</canonical>
            <polymorphic>GTTCTTCTTTCTCTTCTTCAAACTTTCTTCAAGCATTTTTACGCACAACCTTATTATTCAACTGTTTTCAGACTATCACTTGATAAGATGTCGTCGAACGCTGAAGCTATGGCTACCGCTTTCGAGCAAGACGGAGGACCGGTATGTTGATTTCGGAAAATTCAAAGCTTCCAAAATTGAGCAATAGATCAGGGTGCTATGCCACCTCCGGTCAAAACTCTGAACTTTTGGATGCCAAACTTGCTTTAGCCAAGATTTTTCTTTCAGGATCTCAGTGCCGGATCTGGAAAGCGTACCAAGGCCGAAAGAGTGGAGCACAAGCATTCCTCGCAACCAGGAGGCGACACTCGCAAGGTCGTTCAGACTGCCAGCAATGGAGAGGCCAAAAGAAAAGAGAAGTGGTGAGTGACCCAGACTGTGCACTTAGTGCGCGCGAGTGTTTACGTACCGTTAACCTGAACCATTTCAGAATTCAACTTCCTATCGAATCCAAACTCAAYGCCGACTGCCCTTCGAACCGTTCCACACCCCGCTACCCGTGTTTTTAATTTCTTTTTTTACCCGTTTTTTGTAAAATTGTAAATGCCAGGCTAGCCTATCTAGCGACCAATTTTTGTAATGTTATTGTAAAAAGAACCCTGGCTATGTTCACTACTGAGTAATGCCTTTTCCACATCAACGCTTTTTCACTTTGAATAAACTTTTAAAAGAAGACACTGTACCACTGATCACACCGAATATCGTAATTTTCGAAAAATTGATACTTGAAAACTGATGTTATTGCTCAGCAAAACAGATGAATACCATATCCAAAGTTACGTTTCAGACAAATGTCTCGTCCTATTGGATATATCGGATACGAGTTTGGTGATGATGAAATGTTTATGCAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAACTGCATTAATTTTTCAGAGCAACAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAAAAGAGAAGTGGTGAGT</pcr_primer_p1>
		<pcr_primer_p2>ACAATAACATTACAAAAATTGGTC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAAAAGAGAAGTGGTGAGTGACCCAGACTGTGCACTTAGTGCGCGCGAGTGTTTACGTACCGTTAACCTGAACCATTTCAGAATTCAACTTCCTATCGAATCCAAACTCAATGCCGACTGCCCTTCGAACCGTTCCACACCCCGCTACCCGTGTTTTTAATTTCTTTTTTTACCCGTTTTTTGTAAAATTGTAAATGCCAGGCTAGCCTATCTAGCGACCAATTTTTGTAATGTTATTGT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAAAAGAGAAGTGGTGAGTGACCCAGACTGTGCACTTAGTGCGCGCGAGTGTTTACGTACCGTTAACCTGAACCATTTCAGAATTCAACTTCCTATCGAATCCAAACTCAAYGCCGACTGCCCTTCGAACCGTTCCACACCCCGCTACCCGTGTTTTTAATTTCTTTTTTTACCCGTTTTTTGTAAAATTGTAAATGCCAGGCTAGCCTATCTAGCGACCAATTTTTGTAATGTTATTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38342</snp_id>
        <super_contig>c013000986.Contig1</super_contig>
        <contig_pos>41407</contig_pos>
        <strand>+</strand>
        <context>TATAAAAAAT[A/G]WYTKSATTRA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAAT</left_flank>
        <right_flank>ACTGCATTAATTTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACTTCCTATCGAATCCAAACTCAATGCCGACTGCCCTTCGAACCGTTCCACACCCCGCTACCCGTGTTTTTAATTTCTTTTTTTACCCGTTTTTTGTAAAATTGTAAATGCCAGGCTAGCCTATCTAGCGACCAATTTTTGTAATGTTATTGTAAAAAGAACCCTGGCTATGTTCACTACTGAGTAATGCCTTTTCCACATCAACGCTTTTTCACTTTGAATAAACTTTTAAAAGAAGACACTGTACCACTGATCACACCGAATATCGTAATTTTCGAAAAATTGATACTTGAAAACTGATGTTATTGCTCAGCAAAACAGATGAATACCATATCCAAAGTTACGTTTCAGACAAATGTCTCGTCCTATTGGATATATCGGATACGAGTTTGGTGATGATGAAATGTTTATGCAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAACTGCATTAATTTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGACGATGGCCGAAGACGAGGAACCCGTACCAACAAAGTCATTGAACTTCGAAGAAGCATTCCAGAGCAACACTCTTCCAGAAGGCTACAAATCTCCATACAAAACGATTCCATTCCTCACAGAAGACGTCGTTACAGTTAACAGTAAGATACTACTATTTCTCGATCCTTCTTATTCTATGCTTTCAGCCATGAGTCATTGTCCACCAGATGACATCGCGAAACTCATTCGAAACATTCAGAACTCAGTCTACACACTCGGATTAGATGAAGCACGTCAATGCCGACGTGGAAAACTTCTCGATGTTTTGAAGTCAAACACACCGACAGACCACTTTCAGCAGCAAACGCCACCACAGAAATCTTCTCCAATTCCTACTGATAATCATTAAAAACATGTATCATGATCTCACGTATGATTCATAACTTATATAATTTTCATTTTGACATGA</canonical>
            <polymorphic>CAACTTCCTATCGAATCCAAACTCAATGCCGACTGCCCTTCGAACCGTTCCACACCCCGCTACCCGTGTTTTTAATTTCTTTTTTTACCCGTTTTTTGTAAAATTGTAAATGCCAGGCTAGCCTATCTAGCGACCAATTTTTGTAATGTTATTGTAAAAAGAACCCTGGCTATGTTCACTACTGAGTAATGCCTTTTCCACATCAACGCTTTTTCACTTTGAATAAACTTTTAAAAGAAGACACTGTACCACTGATCACACCGAATATCGTAATTTTCGAAAAATTGATACTTGAAAACTGATGTTATTGCTCAGCAAAACAGATGAATACCATATCCAAAGTTACGTTTCAGACAAATGTCTCGTCCTATTGGATATATCGGATACGAGTTTGGTGATGATGAAATGTTTATGCAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATRACTGCATTAATTTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGACGATGGCCGAAGACGAGGAACCCGTACCAACAAAGTCATTGAACTTCGAAGAAGCATTCCAGAGCAACACTCTTCCAGAAGGCTACAAATCTCCATACAAAACGATTCCATTCCTCACAGAAGACGTCGTTACAGTTAACAGTAAGATACTACTATTTCTCGATCCTTCTTATTCTATGCTTTCAGCCATGAGTCATTGTCCACCAGATGACATCGCGAAACTCATTCGAAACATTCAGAACTCAGTCTACACACTCGGATTAGATGAAGCACGTCAATGCCGACGTGGAAAACTTCTCGATGTTTTGAAGTCAAACACACCGACAGACCACTTTCAGCAGCAAACGCCACCACAGAAATCTTCTCCAATTCCTACTGATAATCATTAAAAACATGTATCATGATCTCACGTATGATTCATAACTTATATAATTTTCATTTTGACATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACAGATGATTAATGATGAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATCGTTTTGTATGGAGATTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAACTGCATTAATTTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGACGATGGCCGAAGACGAGGAACCCGTACCAACAAAGTCATTGAACTTCGAAGAAGCATTCCAGAGCAACACTCTTCCAGAAGGCTACAAATCTCCATACAAAACGAT</canonical_amplicon>
		<polymorphic_amplicon>CAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATRACTGCATTAATTTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGACGATGGCCGAAGACGAGGAACCCGTACCAACAAAGTCATTGAACTTCGAAGAAGCATTCCAGAGCAACACTCTTCCAGAAGGCTACAAATCTCCATACAAAACGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38343</snp_id>
        <super_contig>c013000986.Contig1</super_contig>
        <contig_pos>41408</contig_pos>
        <strand>+</strand>
        <context>ATAAAAAATR[A/T]YTKSATTRAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATA</left_flank>
        <right_flank>CTGCATTAATTTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTTCCTATCGAATCCAAACTCAATGCCGACTGCCCTTCGAACCGTTCCACACCCCGCTACCCGTGTTTTTAATTTCTTTTTTTACCCGTTTTTTGTAAAATTGTAAATGCCAGGCTAGCCTATCTAGCGACCAATTTTTGTAATGTTATTGTAAAAAGAACCCTGGCTATGTTCACTACTGAGTAATGCCTTTTCCACATCAACGCTTTTTCACTTTGAATAAACTTTTAAAAGAAGACACTGTACCACTGATCACACCGAATATCGTAATTTTCGAAAAATTGATACTTGAAAACTGATGTTATTGCTCAGCAAAACAGATGAATACCATATCCAAAGTTACGTTTCAGACAAATGTCTCGTCCTATTGGATATATCGGATACGAGTTTGGTGATGATGAAATGTTTATGCAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAACTGCATTAATTTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGACGATGGCCGAAGACGAGGAACCCGTACCAACAAAGTCATTGAACTTCGAAGAAGCATTCCAGAGCAACACTCTTCCAGAAGGCTACAAATCTCCATACAAAACGATTCCATTCCTCACAGAAGACGTCGTTACAGTTAACAGTAAGATACTACTATTTCTCGATCCTTCTTATTCTATGCTTTCAGCCATGAGTCATTGTCCACCAGATGACATCGCGAAACTCATTCGAAACATTCAGAACTCAGTCTACACACTCGGATTAGATGAAGCACGTCAATGCCGACGTGGAAAACTTCTCGATGTTTTGAAGTCAAACACACCGACAGACCACTTTCAGCAGCAAACGCCACCACAGAAATCTTCTCCAATTCCTACTGATAATCATTAAAAACATGTATCATGATCTCACGTATGATTCATAACTTATATAATTTTCATTTTGACATGAA</canonical>
            <polymorphic>AACTTCCTATCGAATCCAAACTCAATGCCGACTGCCCTTCGAACCGTTCCACACCCCGCTACCCGTGTTTTTAATTTCTTTTTTTACCCGTTTTTTGTAAAATTGTAAATGCCAGGCTAGCCTATCTAGCGACCAATTTTTGTAATGTTATTGTAAAAAGAACCCTGGCTATGTTCACTACTGAGTAATGCCTTTTCCACATCAACGCTTTTTCACTTTGAATAAACTTTTAAAAGAAGACACTGTACCACTGATCACACCGAATATCGTAATTTTCGAAAAATTGATACTTGAAAACTGATGTTATTGCTCAGCAAAACAGATGAATACCATATCCAAAGTTACGTTTCAGACAAATGTCTCGTCCTATTGGATATATCGGATACGAGTTTGGTGATGATGAAATGTTTATGCAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAWCTGCATTAATTTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGACGATGGCCGAAGACGAGGAACCCGTACCAACAAAGTCATTGAACTTCGAAGAAGCATTCCAGAGCAACACTCTTCCAGAAGGCTACAAATCTCCATACAAAACGATTCCATTCCTCACAGAAGACGTCGTTACAGTTAACAGTAAGATACTACTATTTCTCGATCCTTCTTATTCTATGCTTTCAGCCATGAGTCATTGTCCACCAGATGACATCGCGAAACTCATTCGAAACATTCAGAACTCAGTCTACACACTCGGATTAGATGAAGCACGTCAATGCCGACGTGGAAAACTTCTCGATGTTTTGAAGTCAAACACACCGACAGACCACTTTCAGCAGCAAACGCCACCACAGAAATCTTCTCCAATTCCTACTGATAATCATTAAAAACATGTATCATGATCTCACGTATGATTCATAACTTATATAATTTTCATTTTGACATGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACAGATGATTAATGATGAGAA</pcr_primer_p1>
		<pcr_primer_p2>ATCGTTTTGTATGGAGATTTGTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAACTGCATTAATTTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGACGATGGCCGAAGACGAGGAACCCGTACCAACAAAGTCATTGAACTTCGAAGAAGCATTCCAGAGCAACACTCTTCCAGAAGGCTACAAATCTCCATACAAAACGAT</canonical_amplicon>
		<polymorphic_amplicon>CAACAGATGATTAATGATGAGAAAAGTACAGATTTGAATAAAGAAAAATTTCTAGGTAATTAATGCAGTTATTTTTATAAAAAATAWCTGCATTAATTTTTCAGAGCAACAGAAAAAAATGCTTGAATGTCTTGAGACGATGGCCGAAGACGAGGAACCCGTACCAACAAAGTCATTGAACTTCGAAGAAGCATTCCAGAGCAACACTCTTCCAGAAGGCTACAAATCTCCATACAAAACGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38344</snp_id>
        <super_contig>c013000986.Contig1</super_contig>
        <contig_pos>53506</contig_pos>
        <strand>+</strand>
        <context>GTCTCATAAA[G/T]ATGGTCCAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGGTTCATTTCTCGAATCACATGATAATGAGCGCTGACGGTCTCATAAA</left_flank>
        <right_flank>ATGGTCCAACACTTCGAACCTATTCGAATCAGATGATTGGATATTCAAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATAGATGGATCTTTGATCTGCTTAGCATCGCCAGCGTCTGTGAGAAGTTCCATGAGTTCAGCATCCGGAGTGGTTAGCATTTCTGCAAGTTTACTAAAAAAAAAAGGAGACCTTGTATATTTAAAATCTCTAATTCTTACTTAACAATAAAACGAATGAGTGACACATTCAGTCTTCGCCACATCTGCCTAGAATAGAATTGAGGCGCTGATTGAGATCCTATGAAAGACATTTCATTTAGCAGTATCGGCTGAAAATATATATTTTCTTTATTTTAACTCATTCATCTCACTATCAGTATTTATAAGAGATGCCAGAAAGAAGTGAAGAATTCAATATTGTTTGATATCTCCTAACAAAACGGAGACAATTGAGGTTTTAGAGCAAGTTAAAGGTGGCGTTTTGAAGTTTCAACTTACACTGTAGTCATTCATTCGGCTGACGACGTGGTTCATTTCTCGAATCACATGATAATGAGCGCTGACGGTCTCATAAATATGGTCCAACACTTCGAACCTATTCGAATCAGATGATTGGATATTCAAGCTTGGAAACGAACTGAAAAATCAACAAAATTGCGAACTATTTTCTGATCGAACATACCCAACAATATGTTCGAACTGGACATTCAAACTGTTTCCAAGAGACGAATCAATGTATTCAGAAAATATTTGTTGTTCATCGATCAAATATCTTTGAATCAGAATCCTCACAGAATTTGTTGTTGAGCTCACGAAATGATGCTTGAGCTTTTTAACAAATTCTAATAACTGATTTGCTAGAAATAAATGCTTCTGTAGAACTGTCCGCGTCGTCGTTAGATTCCACTCATCAACACGGCAAGGCTTCGCTTGATAGAAATGATTGTCGCCGTCCAGCTGGAAAAGATCTGAGCTAACTCCACGGTGCATGTCCAGAAGATTTTTGAAAAATATGTTGGACTTCAAGTGAAAGAATTCGATTGGCTGCCCTTCTCTTGCACTTAAATTCAACTCTT</canonical>
            <polymorphic>CAAATAGATGGATCTTTGATCTGCTTAGCATCGCCAGCGTCTGTGAGAAGTTCCATGAGTTCAGCATCCGGAGTGGTTAGCATTTCTGCAAGTTTACTAAAAAAAAAAGGAGACCTTGTATATTTAAAATCTCTAATTCTTACTTAACAATAAAACGAATGAGTGACACATTCAGTCTTCGCCACATCTGCCTAGAATAGAATTGAGGCGCTGATTGAGATCCTATGAAAGACATTTCATTTAGCAGTATCGGCTGAAAATATATATTTTCTTTATTTTAACTCATTCATCTCACTATCAGTATTTATAAGAGATGCCAGAAAGAAGTGAAGAATTCAATATTGTTTGATATCTCCTAACAAAACGGAGACAATTGAGGTTTTAGAGCAAGTTAAAGGTGGCGTTTTGAAGTTTCAACTTACACTGTAGTCATTCATTCGGCTGACGACGTGGTTCATTTCTCGAATCACATGATAATGAGCGCTGACGGTCTCATAAAKATGGTCCAACACTTCGAACCTATTCGAATCAGATGATTGGATATTCAAGCTTGGAAACGAACTGAAAAATCAACAAAATTGCGAACTATTTTCTGATCGAACATACCCAACAATATGTTCGAACTGGACATTCAAACTGTTTCCAAGAGACGAATCAATGTATTCAGAAAATATTTGTTGTTCATCGATCAAATATCTTTGAATCAGAATCCTCACAGAATTTGTTGTTGAGCTCACGAAATGATGCTTGAGCTTTTTAACAAATTCTAATAACTGATTTGCTAGAAATAAATGCTTCTGTAGAACTGTCCGCGTCGTCGTTAGATTCCACTCATCAACACGGCAAGGCTTCGCTTGATAGAAATGATTGTCGCCGTCCAGCTGGAAAAGATCTGAGCTAACTCCACGGTGCATGTCCAGAAGATTTTTGAAAAATATGTTGGACTTCAAGTGAAAGAATTCGATTGGCTGCCCTTCTCTTGCACTTAAATTCAACTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAGGTTTTAGAGCAAGTTAAAG</pcr_primer_p1>
		<pcr_primer_p2>GTTCGAACATATTGTTGGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGAGGTTTTAGAGCAAGTTAAAGGTGGCGTTTTGAAGTTTCAACTTACACTGTAGTCATTCATTCGGCTGACGACGTGGTTCATTTCTCGAATCACATGATAATGAGCGCTGACGGTCTCATAAATATGGTCCAACACTTCGAACCTATTCGAATCAGATGATTGGATATTCAAGCTTGGAAACGAACTGAAAAATCAACAAAATTGCGAACTATTTTCTGATCGAACATACCCAACAATATGTTCGAAC</canonical_amplicon>
		<polymorphic_amplicon>TGAGGTTTTAGAGCAAGTTAAAGGTGGCGTTTTGAAGTTTCAACTTACACTGTAGTCATTCATTCGGCTGACGACGTGGTTCATTTCTCGAATCACATGATAATGAGCGCTGACGGTCTCATAAAKATGGTCCAACACTTCGAACCTATTCGAATCAGATGATTGGATATTCAAGCTTGGAAACGAACTGAAAAATCAACAAAATTGCGAACTATTTTCTGATCGAACATACCCAACAATATGTTCGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38345</snp_id>
        <super_contig>c013000986.Contig1</super_contig>
        <contig_pos>53635</contig_pos>
        <strand>+</strand>
        <context>TCGAACTGGA[A/C]ATTCAAACTG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGCGAACTATTTTCTGATCGAACATACCCAACAATATGTTCGAACTGGA</left_flank>
        <right_flank>ATTCAAACTGTTTCCAAGAGACGAATCAATGTATTCAGAAAATATTTGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCTAATTCTTACTTAACAATAAAACGAATGAGTGACACATTCAGTCTTCGCCACATCTGCCTAGAATAGAATTGAGGCGCTGATTGAGATCCTATGAAAGACATTTCATTTAGCAGTATCGGCTGAAAATATATATTTTCTTTATTTTAACTCATTCATCTCACTATCAGTATTTATAAGAGATGCCAGAAAGAAGTGAAGAATTCAATATTGTTTGATATCTCCTAACAAAACGGAGACAATTGAGGTTTTAGAGCAAGTTAAAGGTGGCGTTTTGAAGTTTCAACTTACACTGTAGTCATTCATTCGGCTGACGACGTGGTTCATTTCTCGAATCACATGATAATGAGCGCTGACGGTCTCATAAATATGGTCCAACACTTCGAACCTATTCGAATCAGATGATTGGATATTCAAGCTTGGAAACGAACTGAAAAATCAACAAAATTGCGAACTATTTTCTGATCGAACATACCCAACAATATGTTCGAACTGGACATTCAAACTGTTTCCAAGAGACGAATCAATGTATTCAGAAAATATTTGTTGTTCATCGATCAAATATCTTTGAATCAGAATCCTCACAGAATTTGTTGTTGAGCTCACGAAATGATGCTTGAGCTTTTTAACAAATTCTAATAACTGATTTGCTAGAAATAAATGCTTCTGTAGAACTGTCCGCGTCGTCGTTAGATTCCACTCATCAACACGGCAAGGCTTCGCTTGATAGAAATGATTGTCGCCGTCCAGCTGGAAAAGATCTGAGCTAACTCCACGGTGCATGTCCAGAAGATTTTTGAAAAATATGTTGGACTTCAAGTGAAAGAATTCGATTGGCTGCCCTTCTCTTGCACTTAAATTCAACTCTTCACAGCAGAGAATATCTCGTAATTCCCGAGAAATCAAACCCCATTCGTCAACAGGATTGACTTCCCTAGGTTCAGATGCTGAAAAAAACCACAAAATAATAGGTCAAGATGAGCATTCCAACATACGCA</canonical>
            <polymorphic>TCTCTAATTCTTACTTAACAATAAAACGAATGAGTGACACATTCAGTCTTCGCCACATCTGCCTAGAATAGAATTGAGGCGCTGATTGAGATCCTATGAAAGACATTTCATTTAGCAGTATCGGCTGAAAATATATATTTTCTTTATTTTAACTCATTCATCTCACTATCAGTATTTATAAGAGATGCCAGAAAGAAGTGAAGAATTCAATATTGTTTGATATCTCCTAACAAAACGGAGACAATTGAGGTTTTAGAGCAAGTTAAAGGTGGCGTTTTGAAGTTTCAACTTACACTGTAGTCATTCATTCGGCTGACGACGTGGTTCATTTCTCGAATCACATGATAATGAGCGCTGACGGTCTCATAAATATGGTCCAACACTTCGAACCTATTCGAATCAGATGATTGGATATTCAAGCTTGGAAACGAACTGAAAAATCAACAAAATTGCGAACTATTTTCTGATCGAACATACCCAACAATATGTTCGAACTGGAMATTCAAACTGTTTCCAAGAGACGAATCAATGTATTCAGAAAATATTTGTTGTTCATCGATCAAATATCTTTGAATCAGAATCCTCACAGAATTTGTTGTTGAGCTCACGAAATGATGCTTGAGCTTTTTAACAAATTCTAATAACTGATTTGCTAGAAATAAATGCTTCTGTAGAACTGTCCGCGTCGTCGTTAGATTCCACTCATCAACACGGCAAGGCTTCGCTTGATAGAAATGATTGTCGCCGTCCAGCTGGAAAAGATCTGAGCTAACTCCACGGTGCATGTCCAGAAGATTTTTGAAAAATATGTTGGACTTCAAGTGAAAGAATTCGATTGGCTGCCCTTCTCTTGCACTTAAATTCAACTCTTCACAGCAGAGAATATCTCGTAATTCCCGAGAAATCAAACCCCATTCGTCAACAGGATTGACTTCCCTAGGTTCAGATGCTGAAAAAAACCACAAAATAATAGGTCAAGATGAGCATTCCAACATACGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCAACAAAATTGCGAACTAT</pcr_primer_p1>
		<pcr_primer_p2>GGACAGTTCTACAGAAGCATTTA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AATCAACAAAATTGCGAACTATTTTCTGATCGAACATACCCAACAATATGTTCGAACTGGACATTCAAACTGTTTCCAAGAGACGAATCAATGTATTCAGAAAATATTTGTTGTTCATCGATCAAATATCTTTGAATCAGAATCCTCACAGAATTTGTTGTTGAGCTCACGAAATGATGCTTGAGCTTTTTAACAAATTCTAATAACTGATTTGCTAGAAATAAATGCTTCTGTAGAACTGTCC</canonical_amplicon>
		<polymorphic_amplicon>AATCAACAAAATTGCGAACTATTTTCTGATCGAACATACCCAACAATATGTTCGAACTGGAMATTCAAACTGTTTCCAAGAGACGAATCAATGTATTCAGAAAATATTTGTTGTTCATCGATCAAATATCTTTGAATCAGAATCCTCACAGAATTTGTTGTTGAGCTCACGAAATGATGCTTGAGCTTTTTAACAAATTCTAATAACTGATTTGCTAGAAATAAATGCTTCTGTAGAACTGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38346</snp_id>
        <super_contig>c013000986.Contig1</super_contig>
        <contig_pos>53823</contig_pos>
        <strand>+</strand>
        <context>TGTCCGCGTC[A/G]TCRTTAGATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAATAACTGATTTGCTAGAAATAAATGCTTCTGTAGAACTGTCCGCGTC</left_flank>
        <right_flank>TCGTTAGATTCCACTCATCAACACGGCAAGGCTTCGCTTGATAGAAATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAAAGAAGTGAAGAATTCAATATTGTTTGATATCTCCTAACAAAACGGAGACAATTGAGGTTTTAGAGCAAGTTAAAGGTGGCGTTTTGAAGTTTCAACTTACACTGTAGTCATTCATTCGGCTGACGACGTGGTTCATTTCTCGAATCACATGATAATGAGCGCTGACGGTCTCATAAATATGGTCCAACACTTCGAACCTATTCGAATCAGATGATTGGATATTCAAGCTTGGAAACGAACTGAAAAATCAACAAAATTGCGAACTATTTTCTGATCGAACATACCCAACAATATGTTCGAACTGGACATTCAAACTGTTTCCAAGAGACGAATCAATGTATTCAGAAAATATTTGTTGTTCATCGATCAAATATCTTTGAATCAGAATCCTCACAGAATTTGTTGTTGAGCTCACGAAATGATGCTTGAGCTTTTTAACAAATTCTAATAACTGATTTGCTAGAAATAAATGCTTCTGTAGAACTGTCCGCGTCGTCGTTAGATTCCACTCATCAACACGGCAAGGCTTCGCTTGATAGAAATGATTGTCGCCGTCCAGCTGGAAAAGATCTGAGCTAACTCCACGGTGCATGTCCAGAAGATTTTTGAAAAATATGTTGGACTTCAAGTGAAAGAATTCGATTGGCTGCCCTTCTCTTGCACTTAAATTCAACTCTTCACAGCAGAGAATATCTCGTAATTCCCGAGAAATCAAACCCCATTCGTCAACAGGATTGACTTCCCTAGGTTCAGATGCTGAAAAAAACCACAAAATAATAGGTCAAGATGAGCATTCCAACATACGCATAACAGGTTTGTCTATTTCTGCCACTTTCAGCGTTTTCAATACCGGAGAGATATCCCAGGCAAGACGAGGAATGTTATCATGTTCCAAAGGTTCTGAATAAAGTCGGCGTTTGTATTTTCCATCAATCCTCATCATCTGAATGAAGTTTTCTCGTTTGAATAGTTACCTTCAGACTCACCAAATTTTG</canonical>
            <polymorphic>CAGAAAGAAGTGAAGAATTCAATATTGTTTGATATCTCCTAACAAAACGGAGACAATTGAGGTTTTAGAGCAAGTTAAAGGTGGCGTTTTGAAGTTTCAACTTACACTGTAGTCATTCATTCGGCTGACGACGTGGTTCATTTCTCGAATCACATGATAATGAGCGCTGACGGTCTCATAAATATGGTCCAACACTTCGAACCTATTCGAATCAGATGATTGGATATTCAAGCTTGGAAACGAACTGAAAAATCAACAAAATTGCGAACTATTTTCTGATCGAACATACCCAACAATATGTTCGAACTGGACATTCAAACTGTTTCCAAGAGACGAATCAATGTATTCAGAAAATATTTGTTGTTCATCGATCAAATATCTTTGAATCAGAATCCTCACAGAATTTGTTGTTGAGCTCACGAAATGATGCTTGAGCTTTTTAACAAATTCTAATAACTGATTTGCTAGAAATAAATGCTTCTGTAGAACTGTCCGCGTCRTCGTTAGATTCCACTCATCAACACGGCAAGGCTTCGCTTGATAGAAATGATTGTCGCCGTCCAGCTGGAAAAGATCTGAGCTAACTCCACGGTGCATGTCCAGAAGATTTTTGAAAAATATGTTGGACTTCAAGTGAAAGAATTCGATTGGCTGCCCTTCTCTTGCACTTAAATTCAACTCTTCACAGCAGAGAATATCTCGTAATTCCCGAGAAATCAAACCCCATTCGTCAACAGGATTGACTTCCCTAGGTTCAGATGCTGAAAAAAACCACAAAATAATAGGTCAAGATGAGCATTCCAACATACGCATAACAGGTTTGTCTATTTCTGCCACTTTCAGCGTTTTCAATACCGGAGAGATATCCCAGGCAAGACGAGGAATGTTATCATGTTCCAAAGGTTCTGAATAAAGTCGGCGTTTGTATTTTCCATCAATCCTCATCATCTGAATGAAGTTTTCTCGTTTGAATAGTTACCTTCAGACTCACCAAATTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>500 367 133</canonical_bands>
                <polymorphic_bands>867 133</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCCTCACAGAATTTGTTGTT</pcr_primer_p1>
		<pcr_primer_p2>CTTTCACTTGAAGTCCAACATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCCTCACAGAATTTGTTGTTGAGCTCACGAAATGATGCTTGAGCTTTTTAACAAATTCTAATAACTGATTTGCTAGAAATAAATGCTTCTGTAGAACTGTCCGCGTCGTCGTTAGATTCCACTCATCAACACGGCAAGGCTTCGCTTGATAGAAATGATTGTCGCCGTCCAGCTGGAAAAGATCTGAGCTAACTCCACGGTGCATGTCCAGAAGATTTTTGAAAAATATGTTGGACTTCAAGTGAAAG</canonical_amplicon>
		<polymorphic_amplicon>AATCCTCACAGAATTTGTTGTTGAGCTCACGAAATGATGCTTGAGCTTTTTAACAAATTCTAATAACTGATTTGCTAGAAATAAATGCTTCTGTAGAACTGTCCGCGTCRTCGTTAGATTCCACTCATCAACACGGCAAGGCTTCGCTTGATAGAAATGATTGTCGCCGTCCAGCTGGAAAAGATCTGAGCTAACTCCACGGTGCATGTCCAGAAGATTTTTGAAAAATATGTTGGACTTCAAGTGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38347</snp_id>
        <super_contig>c013000986.Contig1</super_contig>
        <contig_pos>53826</contig_pos>
        <strand>+</strand>
        <context>CCGCGTCRTC[A/G]TTAGATTCCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAACTGATTTGCTAGAAATAAATGCTTCTGTAGAACTGTCCGCGTCGTC</left_flank>
        <right_flank>TTAGATTCCACTCATCAACACGGCAAGGCTTCGCTTGATAGAAATGATTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGAAGTGAAGAATTCAATATTGTTTGATATCTCCTAACAAAACGGAGACAATTGAGGTTTTAGAGCAAGTTAAAGGTGGCGTTTTGAAGTTTCAACTTACACTGTAGTCATTCATTCGGCTGACGACGTGGTTCATTTCTCGAATCACATGATAATGAGCGCTGACGGTCTCATAAATATGGTCCAACACTTCGAACCTATTCGAATCAGATGATTGGATATTCAAGCTTGGAAACGAACTGAAAAATCAACAAAATTGCGAACTATTTTCTGATCGAACATACCCAACAATATGTTCGAACTGGACATTCAAACTGTTTCCAAGAGACGAATCAATGTATTCAGAAAATATTTGTTGTTCATCGATCAAATATCTTTGAATCAGAATCCTCACAGAATTTGTTGTTGAGCTCACGAAATGATGCTTGAGCTTTTTAACAAATTCTAATAACTGATTTGCTAGAAATAAATGCTTCTGTAGAACTGTCCGCGTCGTCGTTAGATTCCACTCATCAACACGGCAAGGCTTCGCTTGATAGAAATGATTGTCGCCGTCCAGCTGGAAAAGATCTGAGCTAACTCCACGGTGCATGTCCAGAAGATTTTTGAAAAATATGTTGGACTTCAAGTGAAAGAATTCGATTGGCTGCCCTTCTCTTGCACTTAAATTCAACTCTTCACAGCAGAGAATATCTCGTAATTCCCGAGAAATCAAACCCCATTCGTCAACAGGATTGACTTCCCTAGGTTCAGATGCTGAAAAAAACCACAAAATAATAGGTCAAGATGAGCATTCCAACATACGCATAACAGGTTTGTCTATTTCTGCCACTTTCAGCGTTTTCAATACCGGAGAGATATCCCAGGCAAGACGAGGAATGTTATCATGTTCCAAAGGTTCTGAATAAAGTCGGCGTTTGTATTTTCCATCAATCCTCATCATCTGAATGAAGTTTTCTCGTTTGAATAGTTACCTTCAGACTCACCAAATTTTGTTG</canonical>
            <polymorphic>AAAGAAGTGAAGAATTCAATATTGTTTGATATCTCCTAACAAAACGGAGACAATTGAGGTTTTAGAGCAAGTTAAAGGTGGCGTTTTGAAGTTTCAACTTACACTGTAGTCATTCATTCGGCTGACGACGTGGTTCATTTCTCGAATCACATGATAATGAGCGCTGACGGTCTCATAAATATGGTCCAACACTTCGAACCTATTCGAATCAGATGATTGGATATTCAAGCTTGGAAACGAACTGAAAAATCAACAAAATTGCGAACTATTTTCTGATCGAACATACCCAACAATATGTTCGAACTGGACATTCAAACTGTTTCCAAGAGACGAATCAATGTATTCAGAAAATATTTGTTGTTCATCGATCAAATATCTTTGAATCAGAATCCTCACAGAATTTGTTGTTGAGCTCACGAAATGATGCTTGAGCTTTTTAACAAATTCTAATAACTGATTTGCTAGAAATAAATGCTTCTGTAGAACTGTCCGCGTCGTCRTTAGATTCCACTCATCAACACGGCAAGGCTTCGCTTGATAGAAATGATTGTCGCCGTCCAGCTGGAAAAGATCTGAGCTAACTCCACGGTGCATGTCCAGAAGATTTTTGAAAAATATGTTGGACTTCAAGTGAAAGAATTCGATTGGCTGCCCTTCTCTTGCACTTAAATTCAACTCTTCACAGCAGAGAATATCTCGTAATTCCCGAGAAATCAAACCCCATTCGTCAACAGGATTGACTTCCCTAGGTTCAGATGCTGAAAAAAACCACAAAATAATAGGTCAAGATGAGCATTCCAACATACGCATAACAGGTTTGTCTATTTCTGCCACTTTCAGCGTTTTCAATACCGGAGAGATATCCCAGGCAAGACGAGGAATGTTATCATGTTCCAAAGGTTCTGAATAAAGTCGGCGTTTGTATTTTCCATCAATCCTCATCATCTGAATGAAGTTTTCTCGTTTGAATAGTTACCTTCAGACTCACCAAATTTTGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCCTCACAGAATTTGTTGTT</pcr_primer_p1>
		<pcr_primer_p2>CTTTCACTTGAAGTCCAACATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATCCTCACAGAATTTGTTGTTGAGCTCACGAAATGATGCTTGAGCTTTTTAACAAATTCTAATAACTGATTTGCTAGAAATAAATGCTTCTGTAGAACTGTCCGCGTCGTCGTTAGATTCCACTCATCAACACGGCAAGGCTTCGCTTGATAGAAATGATTGTCGCCGTCCAGCTGGAAAAGATCTGAGCTAACTCCACGGTGCATGTCCAGAAGATTTTTGAAAAATATGTTGGACTTCAAGTGAAAG</canonical_amplicon>
		<polymorphic_amplicon>AATCCTCACAGAATTTGTTGTTGAGCTCACGAAATGATGCTTGAGCTTTTTAACAAATTCTAATAACTGATTTGCTAGAAATAAATGCTTCTGTAGAACTGTCCGCGTCGTCRTTAGATTCCACTCATCAACACGGCAAGGCTTCGCTTGATAGAAATGATTGTCGCCGTCCAGCTGGAAAAGATCTGAGCTAACTCCACGGTGCATGTCCAGAAGATTTTTGAAAAATATGTTGGACTTCAAGTGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38348</snp_id>
        <super_contig>c013000986.Contig1</super_contig>
        <contig_pos>53859</contig_pos>
        <strand>+</strand>
        <context>GCAAGGCTTC[A/G]CTTGATAGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAACTGTCCGCGTCGTCGTTAGATTCCACTCATCAACACGGCAAGGCTTC</left_flank>
        <right_flank>CTTGATAGAAATGATTGTCGCCGTCCAGCTGGAAAAGATCTGAGCTAACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTAACAAAACGGAGACAATTGAGGTTTTAGAGCAAGTTAAAGGTGGCGTTTTGAAGTTTCAACTTACACTGTAGTCATTCATTCGGCTGACGACGTGGTTCATTTCTCGAATCACATGATAATGAGCGCTGACGGTCTCATAAATATGGTCCAACACTTCGAACCTATTCGAATCAGATGATTGGATATTCAAGCTTGGAAACGAACTGAAAAATCAACAAAATTGCGAACTATTTTCTGATCGAACATACCCAACAATATGTTCGAACTGGACATTCAAACTGTTTCCAAGAGACGAATCAATGTATTCAGAAAATATTTGTTGTTCATCGATCAAATATCTTTGAATCAGAATCCTCACAGAATTTGTTGTTGAGCTCACGAAATGATGCTTGAGCTTTTTAACAAATTCTAATAACTGATTTGCTAGAAATAAATGCTTCTGTAGAACTGTCCGCGTCGTCGTTAGATTCCACTCATCAACACGGCAAGGCTTCGCTTGATAGAAATGATTGTCGCCGTCCAGCTGGAAAAGATCTGAGCTAACTCCACGGTGCATGTCCAGAAGATTTTTGAAAAATATGTTGGACTTCAAGTGAAAGAATTCGATTGGCTGCCCTTCTCTTGCACTTAAATTCAACTCTTCACAGCAGAGAATATCTCGTAATTCCCGAGAAATCAAACCCCATTCGTCAACAGGATTGACTTCCCTAGGTTCAGATGCTGAAAAAAACCACAAAATAATAGGTCAAGATGAGCATTCCAACATACGCATAACAGGTTTGTCTATTTCTGCCACTTTCAGCGTTTTCAATACCGGAGAGATATCCCAGGCAAGACGAGGAATGTTATCATGTTCCAAAGGTTCTGAATAAAGTCGGCGTTTGTATTTTCCATCAATCCTCATCATCTGAATGAAGTTTTCTCGTTTGAATAGTTACCTTCAGACTCACCAAATTTTGTTGTACCGAAATTTCAATTAATGTTTTTTCTAGTTT</canonical>
            <polymorphic>TCCTAACAAAACGGAGACAATTGAGGTTTTAGAGCAAGTTAAAGGTGGCGTTTTGAAGTTTCAACTTACACTGTAGTCATTCATTCGGCTGACGACGTGGTTCATTTCTCGAATCACATGATAATGAGCGCTGACGGTCTCATAAATATGGTCCAACACTTCGAACCTATTCGAATCAGATGATTGGATATTCAAGCTTGGAAACGAACTGAAAAATCAACAAAATTGCGAACTATTTTCTGATCGAACATACCCAACAATATGTTCGAACTGGACATTCAAACTGTTTCCAAGAGACGAATCAATGTATTCAGAAAATATTTGTTGTTCATCGATCAAATATCTTTGAATCAGAATCCTCACAGAATTTGTTGTTGAGCTCACGAAATGATGCTTGAGCTTTTTAACAAATTCTAATAACTGATTTGCTAGAAATAAATGCTTCTGTAGAACTGTCCGCGTCGTCGTTAGATTCCACTCATCAACACGGCAAGGCTTCRCTTGATAGAAATGATTGTCGCCGTCCAGCTGGAAAAGATCTGAGCTAACTCCACGGTGCATGTCCAGAAGATTTTTGAAAAATATGTTGGACTTCAAGTGAAAGAATTCGATTGGCTGCCCTTCTCTTGCACTTAAATTCAACTCTTCACAGCAGAGAATATCTCGTAATTCCCGAGAAATCAAACCCCATTCGTCAACAGGATTGACTTCCCTAGGTTCAGATGCTGAAAAAAACCACAAAATAATAGGTCAAGATGAGCATTCCAACATACGCATAACAGGTTTGTCTATTTCTGCCACTTTCAGCGTTTTCAATACCGGAGAGATATCCCAGGCAAGACGAGGAATGTTATCATGTTCCAAAGGTTCTGAATAAAGTCGGCGTTTGTATTTTCCATCAATCCTCATCATCTGAATGAAGTTTTCTCGTTTGAATAGTTACCTTCAGACTCACCAAATTTTGTTGTACCGAAATTTCAATTAATGTTTTTTCTAGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGCTAGAAATAAATGCTTCTGT</pcr_primer_p1>
		<pcr_primer_p2>ATTACGAGATATTCTCTGCTGTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTGCTAGAAATAAATGCTTCTGTAGAACTGTCCGCGTCGTCGTTAGATTCCACTCATCAACACGGCAAGGCTTCGCTTGATAGAAATGATTGTCGCCGTCCAGCTGGAAAAGATCTGAGCTAACTCCACGGTGCATGTCCAGAAGATTTTTGAAAAATATGTTGGACTTCAAGTGAAAGAATTCGATTGGCTGCCCTTCTCTTGCACTTAAATTCAACTCTTCACAGCAGAGAATATCTCGTAAT</canonical_amplicon>
		<polymorphic_amplicon>TTGCTAGAAATAAATGCTTCTGTAGAACTGTCCGCGTCGTCGTTAGATTCCACTCATCAACACGGCAAGGCTTCRCTTGATAGAAATGATTGTCGCCGTCCAGCTGGAAAAGATCTGAGCTAACTCCACGGTGCATGTCCAGAAGATTTTTGAAAAATATGTTGGACTTCAAGTGAAAGAATTCGATTGGCTGCCCTTCTCTTGCACTTAAATTCAACTCTTCACAGCAGAGAATATCTCGTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38349</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>39339</contig_pos>
        <strand></strand>
        <context>tttcagcatt[A/T]tttagaagtc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATT</left_flank>
        <right_flank>TTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCAATGTTTAATGGCTTCTAACCGATTTTTCCTGTTGTATATACCTTTTTGGAAGTTCAAATTTGAAAAATATCCGATTACTCATTTTGCGATTTTTGTGGGATTTGCAATAGCTGTAACTTGCTCAGTTTTGGGTTATGAACGTAAGAACCTTACCTTACCAACTGAACTTACTGAAACAACTAATTATTTTCAGAATCATGCGGCTACATTTTCGATCCTGAAATGCTTGTATGGCGTTCTGAGTACTTGAACTGTTCTGAAAGTCAATCAGCCATAATTTTTGGATGTATAGTAGTGCCTACAGTAATCTCGAATGGTTTGAACCTATCGTCAGCAGCAAAATTGATATTTGGAAAAGTGACAGGGATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGA</canonical>
            <polymorphic>AATTCAATGTTTAATGGCTTCTAACCGATTTTTCCTGTTGTATATACCTTTTTGGAAGTTCAAATTTGAAAAATATCCGATTACTCATTTTGCGATTTTTGTGGGATTTGCAATAGCTGTAACTTGCTCAGTTTTGGGTTATGAACGTAAGAACCTTACCTTACCAACTGAACTTACTGAAACAACTAATTATTTTCAGAATCATGCGGCTACATTTTCGATCCTGAAATGCTTGTATGGCGTTCTGAGTACTTGAACTGTTCTGAAAGTCAATCAGCCATAATTTTTGGATGTATAGTAGTGCCTACAGTAATCTCGAATGGTTTGAACCTATCGTCAGCAGCAAAATTGATATTTGGAAAAGTGACAGGGATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTWTTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGTAAATAAGAAGTTGCAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTACCATAAAAAGCCACAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAA</canonical_amplicon>
		<polymorphic_amplicon>CAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTWTTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38350</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>39378</contig_pos>
        <strand></strand>
        <context>tttccgatta[C/G]tttgaaaact</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTA</left_flank>
        <right_flank>TTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATATACCTTTTTGGAAGTTCAAATTTGAAAAATATCCGATTACTCATTTTGCGATTTTTGTGGGATTTGCAATAGCTGTAACTTGCTCAGTTTTGGGTTATGAACGTAAGAACCTTACCTTACCAACTGAACTTACTGAAACAACTAATTATTTTCAGAATCATGCGGCTACATTTTCGATCCTGAAATGCTTGTATGGCGTTCTGAGTACTTGAACTGTTCTGAAAGTCAATCAGCCATAATTTTTGGATGTATAGTAGTGCCTACAGTAATCTCGAATGGTTTGAACCTATCGTCAGCAGCAAAATTGATATTTGGAAAAGTGACAGGGATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAA</canonical>
            <polymorphic>GTATATACCTTTTTGGAAGTTCAAATTTGAAAAATATCCGATTACTCATTTTGCGATTTTTGTGGGATTTGCAATAGCTGTAACTTGCTCAGTTTTGGGTTATGAACGTAAGAACCTTACCTTACCAACTGAACTTACTGAAACAACTAATTATTTTCAGAATCATGCGGCTACATTTTCGATCCTGAAATGCTTGTATGGCGTTCTGAGTACTTGAACTGTTCTGAAAGTCAATCAGCCATAATTTTTGGATGTATAGTAGTGCCTACAGTAATCTCGAATGGTTTGAACCTATCGTCAGCAGCAAAATTGATATTTGGAAAAGTGACAGGGATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTASTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGTAAATAAGAAGTTGCAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTACCATAAAAAGCCACAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAA</canonical_amplicon>
		<polymorphic_amplicon>CAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTASTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38351</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>39394</contig_pos>
        <strand></strand>
        <context>aaactttgga[G/A]ratgtgaaac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGA</left_flank>
        <right_flank>GATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTCAAATTTGAAAAATATCCGATTACTCATTTTGCGATTTTTGTGGGATTTGCAATAGCTGTAACTTGCTCAGTTTTGGGTTATGAACGTAAGAACCTTACCTTACCAACTGAACTTACTGAAACAACTAATTATTTTCAGAATCATGCGGCTACATTTTCGATCCTGAAATGCTTGTATGGCGTTCTGAGTACTTGAACTGTTCTGAAAGTCAATCAGCCATAATTTTTGGATGTATAGTAGTGCCTACAGTAATCTCGAATGGTTTGAACCTATCGTCAGCAGCAAAATTGATATTTGGAAAAGTGACAGGGATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACAT</canonical>
            <polymorphic>AAGTTCAAATTTGAAAAATATCCGATTACTCATTTTGCGATTTTTGTGGGATTTGCAATAGCTGTAACTTGCTCAGTTTTGGGTTATGAACGTAAGAACCTTACCTTACCAACTGAACTTACTGAAACAACTAATTATTTTCAGAATCATGCGGCTACATTTTCGATCCTGAAATGCTTGTATGGCGTTCTGAGTACTTGAACTGTTCTGAAAGTCAATCAGCCATAATTTTTGGATGTATAGTAGTGCCTACAGTAATCTCGAATGGTTTGAACCTATCGTCAGCAGCAAAATTGATATTTGGAAAAGTGACAGGGATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGARGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGTAAATAAGAAGTTGCAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTACCATAAAAAGCCACAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAA</canonical_amplicon>
		<polymorphic_amplicon>CAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGARGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38352</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>39395</contig_pos>
        <strand></strand>
        <context>aactttggar[G/A]atgtgaaaca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAG</left_flank>
        <right_flank>ATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTCAAATTTGAAAAATATCCGATTACTCATTTTGCGATTTTTGTGGGATTTGCAATAGCTGTAACTTGCTCAGTTTTGGGTTATGAACGTAAGAACCTTACCTTACCAACTGAACTTACTGAAACAACTAATTATTTTCAGAATCATGCGGCTACATTTTCGATCCTGAAATGCTTGTATGGCGTTCTGAGTACTTGAACTGTTCTGAAAGTCAATCAGCCATAATTTTTGGATGTATAGTAGTGCCTACAGTAATCTCGAATGGTTTGAACCTATCGTCAGCAGCAAAATTGATATTTGGAAAAGTGACAGGGATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACATC</canonical>
            <polymorphic>AGTTCAAATTTGAAAAATATCCGATTACTCATTTTGCGATTTTTGTGGGATTTGCAATAGCTGTAACTTGCTCAGTTTTGGGTTATGAACGTAAGAACCTTACCTTACCAACTGAACTTACTGAAACAACTAATTATTTTCAGAATCATGCGGCTACATTTTCGATCCTGAAATGCTTGTATGGCGTTCTGAGTACTTGAACTGTTCTGAAAGTCAATCAGCCATAATTTTTGGATGTATAGTAGTGCCTACAGTAATCTCGAATGGTTTGAACCTATCGTCAGCAGCAAAATTGATATTTGGAAAAGTGACAGGGATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGRATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGTAAATAAGAAGTTGCAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTACCATAAAAAGCCACAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAA</canonical_amplicon>
		<polymorphic_amplicon>CAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGRATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38353</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>39591</contig_pos>
        <strand>+</strand>
        <context>CCATGGRGAA[A/G]AATATGGATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAA</left_flank>
        <right_flank>AATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAACTGTTCTGAAAGTCAATCAGCCATAATTTTTGGATGTATAGTAGTGCCTACAGTAATCTCGAATGGTTTGAACCTATCGTCAGCAGCAAAATTGATATTTGGAAAAGTGACAGGGATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACATCGTATTGACCGGGTACTGTATATTTTCAGAACGTCTTCCAAGACTGCCTCCACGTCATCGATCTTGTCAACTGCCGTTACATCTACGCCCTCCGTGATGAGACCTGGTTCCAATTCATCTTCCTCTCCGTCTCATTTGTTTTGATCTACTCTCTAGATGGGTATGTTCCTTTAAAACCGGTTTTACAATATGCAATC</canonical>
            <polymorphic>TTGAACTGTTCTGAAAGTCAATCAGCCATAATTTTTGGATGTATAGTAGTGCCTACAGTAATCTCGAATGGTTTGAACCTATCGTCAGCAGCAAAATTGATATTTGGAAAAGTGACAGGGATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAARAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACATCGTATTGACCGGGTACTGTATATTTTCAGAACGTCTTCCAAGACTGCCTCCACGTCATCGATCTTGTCAACTGCCGTTACATCTACGCCCTCCGTGATGAGACCTGGTTCCAATTCATCTTCCTCTCCGTCTCATTTGTTTTGATCTACTCTCTAGATGGGTATGTTCCTTTAAAACCGGTTTTACAATATGCAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAAAAATTGTGGCTTTTTAT</pcr_primer_p1>
		<pcr_primer_p2>GGGAATTTTTAGCCATATTTATC</pcr_primer_p2>
		<pcr_amplicon_size>207</pcr_amplicon_size>
		<canonical_amplicon>TTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCC</canonical_amplicon>
		<polymorphic_amplicon>TTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAARAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38354</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>39642</contig_pos>
        <strand></strand>
        <context>ATACCCATAG[G/A]AAAAAATATG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAG</left_flank>
        <right_flank>AAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCA</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTACAGTAATCTCGAATGGTTTGAACCTATCGTCAGCAGCAAAATTGATATTTGGAAAAGTGACAGGGATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACATCGTATTGACCGGGTACTGTATATTTTCAGAACGTCTTCCAAGACTGCCTCCACGTCATCGATCTTGTCAACTGCCGTTACATCTACGCCCTCCGTGATGAGACCTGGTTCCAATTCATCTTCCTCTCCGTCTCATTTGTTTTGATCTACTCTCTAGATGGGTATGTTCCTTTAAAACCGGTTTTACAATATGCAATCTTCTAGATTCGTGATGTTCTATTTCCATCGAGATGTCCAACCTAATTTCAT</canonical>
            <polymorphic>CCTACAGTAATCTCGAATGGTTTGAACCTATCGTCAGCAGCAAAATTGATATTTGGAAAAGTGACAGGGATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGRAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACATCGTATTGACCGGGTACTGTATATTTTCAGAACGTCTTCCAAGACTGCCTCCACGTCATCGATCTTGTCAACTGCCGTTACATCTACGCCCTCCGTGATGAGACCTGGTTCCAATTCATCTTCCTCTCCGTCTCATTTGTTTTGATCTACTCTCTAGATGGGTATGTTCCTTTAAAACCGGTTTTACAATATGCAATCTTCTAGATTCGTGATGTTCTATTTCCATCGAGATGTCCAACCTAATTTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCAAAAATTGTGGCTTTTTAT</pcr_primer_p1>
		<pcr_primer_p2>CATGGGAATTTTTAGCCATA</pcr_primer_p2>
		<pcr_amplicon_size>210</pcr_amplicon_size>
		<canonical_amplicon>TTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATG</canonical_amplicon>
		<polymorphic_amplicon>TTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGRAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38355</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>39667</contig_pos>
        <strand>+</strand>
        <context>AATACCCATR[A/G]AGATAAATAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATA</left_flank>
        <right_flank>AGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTATCGTCAGCAGCAAAATTGATATTTGGAAAAGTGACAGGGATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACATCGTATTGACCGGGTACTGTATATTTTCAGAACGTCTTCCAAGACTGCCTCCACGTCATCGATCTTGTCAACTGCCGTTACATCTACGCCCTCCGTGATGAGACCTGGTTCCAATTCATCTTCCTCTCCGTCTCATTTGTTTTGATCTACTCTCTAGATGGGTATGTTCCTTTAAAACCGGTTTTACAATATGCAATCTTCTAGATTCGTGATGTTCTATTTCCATCGAGATGTCCAACCTAATTTCATTCAGAGGTTTCTAGCTAACGGCAAG</canonical>
            <polymorphic>ACCTATCGTCAGCAGCAAAATTGATATTTGGAAAAGTGACAGGGATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATARAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACATCGTATTGACCGGGTACTGTATATTTTCAGAACGTCTTCCAAGACTGCCTCCACGTCATCGATCTTGTCAACTGCCGTTACATCTACGCCCTCCGTGATGAGACCTGGTTCCAATTCATCTTCCTCTCCGTCTCATTTGTTTTGATCTACTCTCTAGATGGGTATGTTCCTTTAAAACCGGTTTTACAATATGCAATCTTCTAGATTCGTGATGTTCTATTTCCATCGAGATGTCCAACCTAATTTCATTCAGAGGTTTCTAGCTAACGGCAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAAAAATATGGCTAAAATACC</pcr_primer_p1>
		<pcr_primer_p2>TTGGAAGACGTTCTGAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>322</pcr_amplicon_size>
		<canonical_amplicon>AGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACATCGTATTGACCGGGTACTGTATATTTTCAGAACGTCTTCCAA</canonical_amplicon>
		<polymorphic_amplicon>AGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATARAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACATCGTATTGACCGGGTACTGTATATTTTCAGAACGTCTTCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38356</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>39698</contig_pos>
        <strand></strand>
        <context>TCCCATGGGg[A/G]wwaaaaaaac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGG</left_flank>
        <right_flank>TAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAAT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGTGACAGGGATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACATCGTATTGACCGGGTACTGTATATTTTCAGAACGTCTTCCAAGACTGCCTCCACGTCATCGATCTTGTCAACTGCCGTTACATCTACGCCCTCCGTGATGAGACCTGGTTCCAATTCATCTTCCTCTCCGTCTCATTTGTTTTGATCTACTCTCTAGATGGGTATGTTCCTTTAAAACCGGTTTTACAATATGCAATCTTCTAGATTCGTGATGTTCTATTTCCATCGAGATGTCCAACCTAATTTCATTCAGAGGTTTCTAGCTAACGGCAAGATGAGACGAAAAAGCAATGCGATAAAAGCGT</canonical>
            <polymorphic>AAAAGTGACAGGGATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGRTAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACATCGTATTGACCGGGTACTGTATATTTTCAGAACGTCTTCCAAGACTGCCTCCACGTCATCGATCTTGTCAACTGCCGTTACATCTACGCCCTCCGTGATGAGACCTGGTTCCAATTCATCTTCCTCTCCGTCTCATTTGTTTTGATCTACTCTCTAGATGGGTATGTTCCTTTAAAACCGGTTTTACAATATGCAATCTTCTAGATTCGTGATGTTCTATTTCCATCGAGATGTCCAACCTAATTTCATTCAGAGGTTTCTAGCTAACGGCAAGATGAGACGAAAAAGCAATGCGATAAAAGCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAAAAATATGGCTAAAATACC</pcr_primer_p1>
		<pcr_primer_p2>TTGGAAGACGTTCTGAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>322</pcr_amplicon_size>
		<canonical_amplicon>AGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACATCGTATTGACCGGGTACTGTATATTTTCAGAACGTCTTCCAA</canonical_amplicon>
		<polymorphic_amplicon>AGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGRTAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACATCGTATTGACCGGGTACTGTATATTTTCAGAACGTCTTCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38357</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>39699</contig_pos>
        <strand></strand>
        <context>CCCATGGGgr[T/A]waaaaaaact</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGA</left_flank>
        <right_flank>AAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTGACAGGGATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACATCGTATTGACCGGGTACTGTATATTTTCAGAACGTCTTCCAAGACTGCCTCCACGTCATCGATCTTGTCAACTGCCGTTACATCTACGCCCTCCGTGATGAGACCTGGTTCCAATTCATCTTCCTCTCCGTCTCATTTGTTTTGATCTACTCTCTAGATGGGTATGTTCCTTTAAAACCGGTTTTACAATATGCAATCTTCTAGATTCGTGATGTTCTATTTCCATCGAGATGTCCAACCTAATTTCATTCAGAGGTTTCTAGCTAACGGCAAGATGAGACGAAAAAGCAATGCGATAAAAGCGTT</canonical>
            <polymorphic>AAAGTGACAGGGATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGAWAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACATCGTATTGACCGGGTACTGTATATTTTCAGAACGTCTTCCAAGACTGCCTCCACGTCATCGATCTTGTCAACTGCCGTTACATCTACGCCCTCCGTGATGAGACCTGGTTCCAATTCATCTTCCTCTCCGTCTCATTTGTTTTGATCTACTCTCTAGATGGGTATGTTCCTTTAAAACCGGTTTTACAATATGCAATCTTCTAGATTCGTGATGTTCTATTTCCATCGAGATGTCCAACCTAATTTCATTCAGAGGTTTCTAGCTAACGGCAAGATGAGACGAAAAAGCAATGCGATAAAAGCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAAAAATATGGCTAAAATACC</pcr_primer_p1>
		<pcr_primer_p2>TTGGAAGACGTTCTGAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>322</pcr_amplicon_size>
		<canonical_amplicon>AGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACATCGTATTGACCGGGTACTGTATATTTTCAGAACGTCTTCCAA</canonical_amplicon>
		<polymorphic_amplicon>AGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGAWAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACATCGTATTGACCGGGTACTGTATATTTTCAGAACGTCTTCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38358</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>39700</contig_pos>
        <strand></strand>
        <context>CCATGGGgrw[A/T]aaaaaaactg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGAT</left_flank>
        <right_flank>AAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTGACAGGGATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACATCGTATTGACCGGGTACTGTATATTTTCAGAACGTCTTCCAAGACTGCCTCCACGTCATCGATCTTGTCAACTGCCGTTACATCTACGCCCTCCGTGATGAGACCTGGTTCCAATTCATCTTCCTCTCCGTCTCATTTGTTTTGATCTACTCTCTAGATGGGTATGTTCCTTTAAAACCGGTTTTACAATATGCAATCTTCTAGATTCGTGATGTTCTATTTCCATCGAGATGTCCAACCTAATTTCATTCAGAGGTTTCTAGCTAACGGCAAGATGAGACGAAAAAGCAATGCGATAAAAGCGTTT</canonical>
            <polymorphic>AAGTGACAGGGATAACGAAGTCGGATGAAAGGAAGCGGAGGAGAAAATGGATTCGTATGTTTTTGCAGGTAAATAAGAAGTTGCAAAACCGGGAAATGAAATATAGAGAAACGTATTTTTCAGTAGATTTTCAGCATTATTTAGAAGTCTAAAGCTCTGCTTTCAAATTTCCGATTACTTTGAAAACTTTGGAGGATGTGAAACAGATCTAGATTGAAAACTTTGCATTCACAGAATTTTTGGAAAATTCCTAGTTTTTCTGTTATTTGCCGAATTCCATGCACTTCAAAAATTGTGGCTTTTTATGGTAAAAGAAAGGGGAACCATGGGAAAAATTTGACTGAAAAATAGCAATGGGGGAAAATATGGCGAAAAAGTAACCATGGGGAAAAATATGGATAAAAATACCCATGAGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGATWAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACATCGTATTGACCGGGTACTGTATATTTTCAGAACGTCTTCCAAGACTGCCTCCACGTCATCGATCTTGTCAACTGCCGTTACATCTACGCCCTCCGTGATGAGACCTGGTTCCAATTCATCTTCCTCTCCGTCTCATTTGTTTTGATCTACTCTCTAGATGGGTATGTTCCTTTAAAACCGGTTTTACAATATGCAATCTTCTAGATTCGTGATGTTCTATTTCCATCGAGATGTCCAACCTAATTTCATTCAGAGGTTTCTAGCTAACGGCAAGATGAGACGAAAAAGCAATGCGATAAAAGCGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAAAAATATGGCTAAAATACC</pcr_primer_p1>
		<pcr_primer_p2>TTGGAAGACGTTCTGAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>322</pcr_amplicon_size>
		<canonical_amplicon>AGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGATAAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACATCGTATTGACCGGGTACTGTATATTTTCAGAACGTCTTCCAA</canonical_amplicon>
		<polymorphic_amplicon>AGGAAAAATATGGCTAAAATACCCATAGGAAAAAATATGGCTAAATACCCATAAAGATAAATATGGCTAAAAATTCCCATGGGGATWAAAAAAACTGTCTTACAGATATTGGCAAATATCTAAAAAAAAGGAAATTTTCAAAAAATTCTGTAATTACAAAATTTTCAATCTAGGTCTGTTTAACAATTTCCAAAATTTTCCAAGTGATCCGACACTTGACAGCCGAGCTCTAAACTCTTGAAAATAAACGAAAATCAACTGAAAAATATAGTGTTATACATCGTATTGACCGGGTACTGTATATTTTCAGAACGTCTTCCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38359</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>41201</contig_pos>
        <strand></strand>
        <context>aacctgtatt[G/A]aaagggcccc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATT</left_flank>
        <right_flank>AAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTTCCGAATAGATTGATTCTAAACGGAACTATGACAGGGCCCGCGAAGGTCTGACAAGTACCGCTGAACCACGAAGACACGATGGGCAGGATTTGTCCAAAAACGAGAAACTTCTGAAATTCTTTAAATCTTAAATTTTTCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGCATTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTTATTGTTATTTTCCAAAAACGATCATGTCGTTGGCTCGTCAAAACTATCATGATGAGGTCGAGGCTGCCGTCAATAAACAGGTTAGTTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGATCAATGTTGAGCTATACGCCTCATATGTCTACCTTTCTATGTCGGCTTACTTTGACCGTGATGACGTGGCACTTCCAAAAGTCGCCAAATTCTTCAAAGAGCAATCAGAAGAGGAGCGTGGACACGCCACGGAGCTCATGAGAATCCAGAATGTTCGTGGTGGGCGTGTCGTTTTTAACGACGTTCAGAAGCCAGAAAAAGATGAATGGGGTACTGTACTCGAAGCTTTCGAAGCTGCATTGGCTCTTGAGAGAATGAACAACACATCACTTCTGAAACTACACGGAGTTGCTGAGCAACGTAACGATGCGCATTTGACTAACTACATTCAAGGGAAATATTTGGAAGAGCAGGT</canonical>
            <polymorphic>GTTTTTCCGAATAGATTGATTCTAAACGGAACTATGACAGGGCCCGCGAAGGTCTGACAAGTACCGCTGAACCACGAAGACACGATGGGCAGGATTTGTCCAAAAACGAGAAACTTCTGAAATTCTTTAAATCTTAAATTTTTCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGCATTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTTATTGTTATTTTCCAAAAACGATCATGTCGTTGGCTCGTCAAAACTATCATGATGAGGTCGAGGCTGCCGTCAATAAACAGGTTAGTTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTRAAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGATCAATGTTGAGCTATACGCCTCATATGTCTACCTTTCTATGTCGGCTTACTTTGACCGTGATGACGTGGCACTTCCAAAAGTCGCCAAATTCTTCAAAGAGCAATCAGAAGAGGAGCGTGGACACGCCACGGAGCTCATGAGAATCCAGAATGTTCGTGGTGGGCGTGTCGTTTTTAACGACGTTCAGAAGCCAGAAAAAGATGAATGGGGTACTGTACTCGAAGCTTTCGAAGCTGCATTGGCTCTTGAGAGAATGAACAACACATCACTTCTGAAACTACACGGAGTTGCTGAGCAACGTAACGATGCGCATTTGACTAACTACATTCAAGGGAAATATTTGGAAGAGCAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGAGATAATGGGAAACATGAG</pcr_primer_p1>
		<pcr_primer_p2>TAGCTCAACATTGATCTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGATCAATGTTGAGCTA</canonical_amplicon>
		<polymorphic_amplicon>TTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTRAAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGATCAATGTTGAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38360</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>41216</contig_pos>
        <strand></strand>
        <context>ggccccacat[A/G]rtcaagttta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACAT</left_flank>
        <right_flank>ATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGATTCTAAACGGAACTATGACAGGGCCCGCGAAGGTCTGACAAGTACCGCTGAACCACGAAGACACGATGGGCAGGATTTGTCCAAAAACGAGAAACTTCTGAAATTCTTTAAATCTTAAATTTTTCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGCATTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTTATTGTTATTTTCCAAAAACGATCATGTCGTTGGCTCGTCAAAACTATCATGATGAGGTCGAGGCTGCCGTCAATAAACAGGTTAGTTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGATCAATGTTGAGCTATACGCCTCATATGTCTACCTTTCTATGTCGGCTTACTTTGACCGTGATGACGTGGCACTTCCAAAAGTCGCCAAATTCTTCAAAGAGCAATCAGAAGAGGAGCGTGGACACGCCACGGAGCTCATGAGAATCCAGAATGTTCGTGGTGGGCGTGTCGTTTTTAACGACGTTCAGAAGCCAGAAAAAGATGAATGGGGTACTGTACTCGAAGCTTTCGAAGCTGCATTGGCTCTTGAGAGAATGAACAACACATCACTTCTGAAACTACACGGAGTTGCTGAGCAACGTAACGATGCGCATTTGACTAACTACATTCAAGGGAAATATTTGGAAGAGCAGGTCGGTTTTTTTAGCAA</canonical>
            <polymorphic>TTGATTCTAAACGGAACTATGACAGGGCCCGCGAAGGTCTGACAAGTACCGCTGAACCACGAAGACACGATGGGCAGGATTTGTCCAAAAACGAGAAACTTCTGAAATTCTTTAAATCTTAAATTTTTCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGCATTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTTATTGTTATTTTCCAAAAACGATCATGTCGTTGGCTCGTCAAAACTATCATGATGAGGTCGAGGCTGCCGTCAATAAACAGGTTAGTTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATRATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGATCAATGTTGAGCTATACGCCTCATATGTCTACCTTTCTATGTCGGCTTACTTTGACCGTGATGACGTGGCACTTCCAAAAGTCGCCAAATTCTTCAAAGAGCAATCAGAAGAGGAGCGTGGACACGCCACGGAGCTCATGAGAATCCAGAATGTTCGTGGTGGGCGTGTCGTTTTTAACGACGTTCAGAAGCCAGAAAAAGATGAATGGGGTACTGTACTCGAAGCTTTCGAAGCTGCATTGGCTCTTGAGAGAATGAACAACACATCACTTCTGAAACTACACGGAGTTGCTGAGCAACGTAACGATGCGCATTTGACTAACTACATTCAAGGGAAATATTTGGAAGAGCAGGTCGGTTTTTTTAGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGAGATAATGGGAAACATGAG</pcr_primer_p1>
		<pcr_primer_p2>TAGCTCAACATTGATCTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGATCAATGTTGAGCTA</canonical_amplicon>
		<polymorphic_amplicon>TTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATRATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGATCAATGTTGAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38361</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>41217</contig_pos>
        <strand></strand>
        <context>gccccacatr[A/G]tcaagtttaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATA</left_flank>
        <right_flank>TCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATTCTAAACGGAACTATGACAGGGCCCGCGAAGGTCTGACAAGTACCGCTGAACCACGAAGACACGATGGGCAGGATTTGTCCAAAAACGAGAAACTTCTGAAATTCTTTAAATCTTAAATTTTTCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGCATTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTTATTGTTATTTTCCAAAAACGATCATGTCGTTGGCTCGTCAAAACTATCATGATGAGGTCGAGGCTGCCGTCAATAAACAGGTTAGTTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGATCAATGTTGAGCTATACGCCTCATATGTCTACCTTTCTATGTCGGCTTACTTTGACCGTGATGACGTGGCACTTCCAAAAGTCGCCAAATTCTTCAAAGAGCAATCAGAAGAGGAGCGTGGACACGCCACGGAGCTCATGAGAATCCAGAATGTTCGTGGTGGGCGTGTCGTTTTTAACGACGTTCAGAAGCCAGAAAAAGATGAATGGGGTACTGTACTCGAAGCTTTCGAAGCTGCATTGGCTCTTGAGAGAATGAACAACACATCACTTCTGAAACTACACGGAGTTGCTGAGCAACGTAACGATGCGCATTTGACTAACTACATTCAAGGGAAATATTTGGAAGAGCAGGTCGGTTTTTTTAGCAAT</canonical>
            <polymorphic>TGATTCTAAACGGAACTATGACAGGGCCCGCGAAGGTCTGACAAGTACCGCTGAACCACGAAGACACGATGGGCAGGATTTGTCCAAAAACGAGAAACTTCTGAAATTCTTTAAATCTTAAATTTTTCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGCATTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTTATTGTTATTTTCCAAAAACGATCATGTCGTTGGCTCGTCAAAACTATCATGATGAGGTCGAGGCTGCCGTCAATAAACAGGTTAGTTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATARTCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGATCAATGTTGAGCTATACGCCTCATATGTCTACCTTTCTATGTCGGCTTACTTTGACCGTGATGACGTGGCACTTCCAAAAGTCGCCAAATTCTTCAAAGAGCAATCAGAAGAGGAGCGTGGACACGCCACGGAGCTCATGAGAATCCAGAATGTTCGTGGTGGGCGTGTCGTTTTTAACGACGTTCAGAAGCCAGAAAAAGATGAATGGGGTACTGTACTCGAAGCTTTCGAAGCTGCATTGGCTCTTGAGAGAATGAACAACACATCACTTCTGAAACTACACGGAGTTGCTGAGCAACGTAACGATGCGCATTTGACTAACTACATTCAAGGGAAATATTTGGAAGAGCAGGTCGGTTTTTTTAGCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGAGATAATGGGAAACATGAG</pcr_primer_p1>
		<pcr_primer_p2>TAGCTCAACATTGATCTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGATCAATGTTGAGCTA</canonical_amplicon>
		<polymorphic_amplicon>TTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATARTCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGATCAATGTTGAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38362</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>41276</contig_pos>
        <strand></strand>
        <context>GAAATAttag[C/T]tcgaagtcma</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAG</left_flank>
        <right_flank>TCGAAGTCCAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGACACGATGGGCAGGATTTGTCCAAAAACGAGAAACTTCTGAAATTCTTTAAATCTTAAATTTTTCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGCATTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTTATTGTTATTTTCCAAAAACGATCATGTCGTTGGCTCGTCAAAACTATCATGATGAGGTCGAGGCTGCCGTCAATAAACAGGTTAGTTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGATCAATGTTGAGCTATACGCCTCATATGTCTACCTTTCTATGTCGGCTTACTTTGACCGTGATGACGTGGCACTTCCAAAAGTCGCCAAATTCTTCAAAGAGCAATCAGAAGAGGAGCGTGGACACGCCACGGAGCTCATGAGAATCCAGAATGTTCGTGGTGGGCGTGTCGTTTTTAACGACGTTCAGAAGCCAGAAAAAGATGAATGGGGTACTGTACTCGAAGCTTTCGAAGCTGCATTGGCTCTTGAGAGAATGAACAACACATCACTTCTGAAACTACACGGAGTTGCTGAGCAACGTAACGATGCGCATTTGACTAACTACATTCAAGGGAAATATTTGGAAGAGCAGGTCGGTTTTTTTAGCAATTAAAGGAATTTTATTTTTATTTCAGGTTCATTCCATCAACGAGTTTGCTGGATATATTG</canonical>
            <polymorphic>GAAGACACGATGGGCAGGATTTGTCCAAAAACGAGAAACTTCTGAAATTCTTTAAATCTTAAATTTTTCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGCATTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTTATTGTTATTTTCCAAAAACGATCATGTCGTTGGCTCGTCAAAACTATCATGATGAGGTCGAGGCTGCCGTCAATAAACAGGTTAGTTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGYTCGAAGTCCAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGATCAATGTTGAGCTATACGCCTCATATGTCTACCTTTCTATGTCGGCTTACTTTGACCGTGATGACGTGGCACTTCCAAAAGTCGCCAAATTCTTCAAAGAGCAATCAGAAGAGGAGCGTGGACACGCCACGGAGCTCATGAGAATCCAGAATGTTCGTGGTGGGCGTGTCGTTTTTAACGACGTTCAGAAGCCAGAAAAAGATGAATGGGGTACTGTACTCGAAGCTTTCGAAGCTGCATTGGCTCTTGAGAGAATGAACAACACATCACTTCTGAAACTACACGGAGTTGCTGAGCAACGTAACGATGCGCATTTGACTAACTACATTCAAGGGAAATATTTGGAAGAGCAGGTCGGTTTTTTTAGCAATTAAAGGAATTTTATTTTTATTTCAGGTTCATTCCATCAACGAGTTTGCTGGATATATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>452 196 123 91 82 47 9</canonical_bands>
                <polymorphic_bands>452 196 129 123 91 9</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>194 187 119 89 88 60 57 47 34 34 30 22 21 9 9</canonical_bands>
                <polymorphic_bands>194 187 119 89 88 69 60 57 34 34 30 21 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGAGATAATGGGAAACATGAG</pcr_primer_p1>
		<pcr_primer_p2>TAGCTCAACATTGATCTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGATCAATGTTGAGCTA</canonical_amplicon>
		<polymorphic_amplicon>TTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGYTCGAAGTCCAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGATCAATGTTGAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38363</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>41285</contig_pos>
        <strand></strand>
        <context>gytcgaagtc[C/A]aaagttagcg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTC</left_flank>
        <right_flank>AAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGGCAGGATTTGTCCAAAAACGAGAAACTTCTGAAATTCTTTAAATCTTAAATTTTTCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGCATTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTTATTGTTATTTTCCAAAAACGATCATGTCGTTGGCTCGTCAAAACTATCATGATGAGGTCGAGGCTGCCGTCAATAAACAGGTTAGTTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGATCAATGTTGAGCTATACGCCTCATATGTCTACCTTTCTATGTCGGCTTACTTTGACCGTGATGACGTGGCACTTCCAAAAGTCGCCAAATTCTTCAAAGAGCAATCAGAAGAGGAGCGTGGACACGCCACGGAGCTCATGAGAATCCAGAATGTTCGTGGTGGGCGTGTCGTTTTTAACGACGTTCAGAAGCCAGAAAAAGATGAATGGGGTACTGTACTCGAAGCTTTCGAAGCTGCATTGGCTCTTGAGAGAATGAACAACACATCACTTCTGAAACTACACGGAGTTGCTGAGCAACGTAACGATGCGCATTTGACTAACTACATTCAAGGGAAATATTTGGAAGAGCAGGTCGGTTTTTTTAGCAATTAAAGGAATTTTATTTTTATTTCAGGTTCATTCCATCAACGAGTTTGCTGGATATATTGCCAGACTCA</canonical>
            <polymorphic>ATGGGCAGGATTTGTCCAAAAACGAGAAACTTCTGAAATTCTTTAAATCTTAAATTTTTCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGCATTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTTATTGTTATTTTCCAAAAACGATCATGTCGTTGGCTCGTCAAAACTATCATGATGAGGTCGAGGCTGCCGTCAATAAACAGGTTAGTTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCMAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGATCAATGTTGAGCTATACGCCTCATATGTCTACCTTTCTATGTCGGCTTACTTTGACCGTGATGACGTGGCACTTCCAAAAGTCGCCAAATTCTTCAAAGAGCAATCAGAAGAGGAGCGTGGACACGCCACGGAGCTCATGAGAATCCAGAATGTTCGTGGTGGGCGTGTCGTTTTTAACGACGTTCAGAAGCCAGAAAAAGATGAATGGGGTACTGTACTCGAAGCTTTCGAAGCTGCATTGGCTCTTGAGAGAATGAACAACACATCACTTCTGAAACTACACGGAGTTGCTGAGCAACGTAACGATGCGCATTTGACTAACTACATTCAAGGGAAATATTTGGAAGAGCAGGTCGGTTTTTTTAGCAATTAAAGGAATTTTATTTTTATTTCAGGTTCATTCCATCAACGAGTTTGCTGGATATATTGCCAGACTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAGAGATAATGGGAAACATGAG</pcr_primer_p1>
		<pcr_primer_p2>TAGCTCAACATTGATCTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGATCAATGTTGAGCTA</canonical_amplicon>
		<polymorphic_amplicon>TTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCMAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGATCAATGTTGAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38364</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>41296</contig_pos>
        <strand></strand>
        <context>aaagttagcg[G/A]gctcttctat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCG</left_flank>
        <right_flank>GCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTCCAAAAACGAGAAACTTCTGAAATTCTTTAAATCTTAAATTTTTCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGCATTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTTATTGTTATTTTCCAAAAACGATCATGTCGTTGGCTCGTCAAAACTATCATGATGAGGTCGAGGCTGCCGTCAATAAACAGGTTAGTTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGATCAATGTTGAGCTATACGCCTCATATGTCTACCTTTCTATGTCGGCTTACTTTGACCGTGATGACGTGGCACTTCCAAAAGTCGCCAAATTCTTCAAAGAGCAATCAGAAGAGGAGCGTGGACACGCCACGGAGCTCATGAGAATCCAGAATGTTCGTGGTGGGCGTGTCGTTTTTAACGACGTTCAGAAGCCAGAAAAAGATGAATGGGGTACTGTACTCGAAGCTTTCGAAGCTGCATTGGCTCTTGAGAGAATGAACAACACATCACTTCTGAAACTACACGGAGTTGCTGAGCAACGTAACGATGCGCATTTGACTAACTACATTCAAGGGAAATATTTGGAAGAGCAGGTCGGTTTTTTTAGCAATTAAAGGAATTTTATTTTTATTTCAGGTTCATTCCATCAACGAGTTTGCTGGATATATTGCCAGACTCAAGAGAGCTGGT</canonical>
            <polymorphic>TTGTCCAAAAACGAGAAACTTCTGAAATTCTTTAAATCTTAAATTTTTCATTTTCTCCTACCCCTCTTGCCGTAATCGATTTAAGTAACTTTTCGCTGACATGGGTATTTTTGCACACATGGCATAATCACTTATTATCAGTGATCATCAGTCCGTGTCCTTTACCCAATCAGGCTCCGCCCACTACCTGCATTTAAAAGAGAGACGGTCCAGTGGTGATAAAACAGTTATTGTTATTTTCCAAAAACGATCATGTCGTTGGCTCGTCAAAACTATCATGATGAGGTCGAGGCTGCCGTCAATAAACAGGTTAGTTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCGRGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGATCAATGTTGAGCTATACGCCTCATATGTCTACCTTTCTATGTCGGCTTACTTTGACCGTGATGACGTGGCACTTCCAAAAGTCGCCAAATTCTTCAAAGAGCAATCAGAAGAGGAGCGTGGACACGCCACGGAGCTCATGAGAATCCAGAATGTTCGTGGTGGGCGTGTCGTTTTTAACGACGTTCAGAAGCCAGAAAAAGATGAATGGGGTACTGTACTCGAAGCTTTCGAAGCTGCATTGGCTCTTGAGAGAATGAACAACACATCACTTCTGAAACTACACGGAGTTGCTGAGCAACGTAACGATGCGCATTTGACTAACTACATTCAAGGGAAATATTTGGAAGAGCAGGTCGGTTTTTTTAGCAATTAAAGGAATTTTATTTTTATTTCAGGTTCATTCCATCAACGAGTTTGCTGGATATATTGCCAGACTCAAGAGAGCTGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>413 314 183 90</canonical_bands>
                <polymorphic_bands>413 314 273</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>413 314 183 90</canonical_bands>
                <polymorphic_bands>413 314 273</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>202 174 119 89 88 60 57 47 34 34 30 22 21 9 9 5</canonical_bands>
                <polymorphic_bands>202 174 119 89 88 82 57 47 34 34 30 21 9 9 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAGAGATAATGGGAAACATGAG</pcr_primer_p1>
		<pcr_primer_p2>TAGCTCAACATTGATCTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCGGGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGATCAATGTTGAGCTA</canonical_amplicon>
		<polymorphic_amplicon>TTAGAGATAATGGGAAACATGAGAGACGCAGGTATGATGGTGATGATGATTTCACTACTGCCAAATTGGAACTACCGTAAAACCTGTATTGAAAGGGCCCCACATAATCAAGTTTAAGCTCAATTATCTCAATTTCTGTAAAAGATCATTGATGTGAAATATTAGCTCGAAGTCCAAAGTTAGCGRGCTCTTCTATTACAGGTTCTAGGGTAATCTGAAATATAATAATTTTCAGATCAATGTTGAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38365</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>74449</contig_pos>
        <strand>+</strand>
        <context>ACAAGTAAGT[A/G]CCTAGAACCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGT</left_flank>
        <right_flank>CCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAATATTTTATCAGTTAACACATTTTTGATATCTTGCAAAGGAATTGAGATAACAAAGCTCACAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTGAATCAACATTGACTTTTGTCTTATCTTACCGTATCGTCACCCATGTCTCATTCAAACTATGATTTTCTTGCAAAAACCTTTCTTCATCGTGTAATAAGCACATCGTGTTCACTGTGAGTTGAGACATGGATTTTCGAATTCCACATGACATCATTTTGTAATTAGAGGCTACCTAAAAAAAAGAGTATGATTATAGTTTTTAACACTTGGAGTTTACTTACAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAA</canonical>
            <polymorphic>AGAAATATTTTATCAGTTAACACATTTTTGATATCTTGCAAAGGAATTGAGATAACAAAGCTCACAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTGAATCAACATTGACTTTTGTCTTATCTTACCGTATCGTCACCCATGTCTCATTCAAACTATGATTTTCTTGCAAAAACCTTTCTTCATCGTGTAATAAGCACATCGTGTTCACTGTGAGTTGAGACATGGATTTTCGAATTCCACATGACATCATTTTGTAATTAGAGGCTACCTAAAAAAAAGAGTATGATTATAGTTTTTAACACTTGGAGTTTACTTACAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTRCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>175 85 72 63 63 62 60 52 49 49 42 29 27 23 22 22 16 14 12 11 10 9 9 7 5 4 4 2 2</canonical_bands>
                <polymorphic_bands>175 95 85 63 63 62 60 52 49 49 42 29 27 22 22 16 14 12 11 10 9 9 7 5 4 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTGAAATTGACCTCTTTACC</pcr_primer_p1>
		<pcr_primer_p2>CTGATTTAGTAGAAGCCTCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAG</canonical_amplicon>
		<polymorphic_amplicon>CTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTRCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38366</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>74499</contig_pos>
        <strand>+</strand>
        <context>TTTCTAAAAA[C/T]ATTTCAGTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAA</left_flank>
        <right_flank>ATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAACAAAGCTCACAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTGAATCAACATTGACTTTTGTCTTATCTTACCGTATCGTCACCCATGTCTCATTCAAACTATGATTTTCTTGCAAAAACCTTTCTTCATCGTGTAATAAGCACATCGTGTTCACTGTGAGTTGAGACATGGATTTTCGAATTCCACATGACATCATTTTGTAATTAGAGGCTACCTAAAAAAAAGAGTATGATTATAGTTTTTAACACTTGGAGTTTACTTACAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTAT</canonical>
            <polymorphic>GATAACAAAGCTCACAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTGAATCAACATTGACTTTTGTCTTATCTTACCGTATCGTCACCCATGTCTCATTCAAACTATGATTTTCTTGCAAAAACCTTTCTTCATCGTGTAATAAGCACATCGTGTTCACTGTGAGTTGAGACATGGATTTTCGAATTCCACATGACATCATTTTGTAATTAGAGGCTACCTAAAAAAAAGAGTATGATTATAGTTTTTAACACTTGGAGTTTACTTACAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAAYATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTGAAATTGACCTCTTTACC</pcr_primer_p1>
		<pcr_primer_p2>CTGATTTAGTAGAAGCCTCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAG</canonical_amplicon>
		<polymorphic_amplicon>CTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAAYATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38367</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>74520</contig_pos>
        <strand>+</strand>
        <context>AAGTTTAAAT[A/G]TATCAGCTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAAT</left_flank>
        <right_flank>TATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTGTGAGGGCCCTTCTATTACAGGTTTTGAATCAACATTGACTTTTGTCTTATCTTACCGTATCGTCACCCATGTCTCATTCAAACTATGATTTTCTTGCAAAAACCTTTCTTCATCGTGTAATAAGCACATCGTGTTCACTGTGAGTTGAGACATGGATTTTCGAATTCCACATGACATCATTTTGTAATTAGAGGCTACCTAAAAAAAAGAGTATGATTATAGTTTTTAACACTTGGAGTTTACTTACAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTC</canonical>
            <polymorphic>CAGTGTGAGGGCCCTTCTATTACAGGTTTTGAATCAACATTGACTTTTGTCTTATCTTACCGTATCGTCACCCATGTCTCATTCAAACTATGATTTTCTTGCAAAAACCTTTCTTCATCGTGTAATAAGCACATCGTGTTCACTGTGAGTTGAGACATGGATTTTCGAATTCCACATGACATCATTTTGTAATTAGAGGCTACCTAAAAAAAAGAGTATGATTATAGTTTTTAACACTTGGAGTTTACTTACAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATRTATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGTGAAATTGACCTCTTTACC</pcr_primer_p1>
		<pcr_primer_p2>CTGATTTAGTAGAAGCCTCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAG</canonical_amplicon>
		<polymorphic_amplicon>CTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATRTATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38368</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>74565</contig_pos>
        <strand>+</strand>
        <context>ATGTTTCAAC[A/G]CTAGACGRAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAAC</left_flank>
        <right_flank>CTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGTCTTATCTTACCGTATCGTCACCCATGTCTCATTCAAACTATGATTTTCTTGCAAAAACCTTTCTTCATCGTGTAATAAGCACATCGTGTTCACTGTGAGTTGAGACATGGATTTTCGAATTCCACATGACATCATTTTGTAATTAGAGGCTACCTAAAAAAAAGAGTATGATTATAGTTTTTAACACTTGGAGTTTACTTACAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCT</canonical>
            <polymorphic>TTTGTCTTATCTTACCGTATCGTCACCCATGTCTCATTCAAACTATGATTTTCTTGCAAAAACCTTTCTTCATCGTGTAATAAGCACATCGTGTTCACTGTGAGTTGAGACATGGATTTTCGAATTCCACATGACATCATTTTGTAATTAGAGGCTACCTAAAAAAAAGAGTATGATTATAGTTTTTAACACTTGGAGTTTACTTACAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACRCTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>175 85 72 63 62 60 56 52 49 49 47 29 27 25 25 23 22 16 11 10 9 9 7 5 4 4 2 2</canonical_bands>
                <polymorphic_bands>175 85 72 63 62 60 56 52 49 49 47 40 27 25 25 23 22 16 10 9 9 7 5 4 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTGAAATTGACCTCTTTACC</pcr_primer_p1>
		<pcr_primer_p2>CTGATTTAGTAGAAGCCTCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAG</canonical_amplicon>
		<polymorphic_amplicon>CTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACRCTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38369</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>74573</contig_pos>
        <strand>+</strand>
        <context>ACRCTAGACG[A/G]AAATGAGACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACG</left_flank>
        <right_flank>AAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTTACCGTATCGTCACCCATGTCTCATTCAAACTATGATTTTCTTGCAAAAACCTTTCTTCATCGTGTAATAAGCACATCGTGTTCACTGTGAGTTGAGACATGGATTTTCGAATTCCACATGACATCATTTTGTAATTAGAGGCTACCTAAAAAAAAGAGTATGATTATAGTTTTTAACACTTGGAGTTTACTTACAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATT</canonical>
            <polymorphic>ATCTTACCGTATCGTCACCCATGTCTCATTCAAACTATGATTTTCTTGCAAAAACCTTTCTTCATCGTGTAATAAGCACATCGTGTTCACTGTGAGTTGAGACATGGATTTTCGAATTCCACATGACATCATTTTGTAATTAGAGGCTACCTAAAAAAAAGAGTATGATTATAGTTTTTAACACTTGGAGTTTACTTACAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGRAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAACGGAAAGATGTAGTTTCTA</pcr_primer_p1>
		<pcr_primer_p2>GAAAGATCTGTTTCGGAGATATT</pcr_primer_p2>
		<pcr_amplicon_size>203</pcr_amplicon_size>
		<canonical_amplicon>ACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTC</canonical_amplicon>
		<polymorphic_amplicon>ACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGRAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38370</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>74628</contig_pos>
        <strand>+</strand>
        <context>ATCAGAATTC[A/T]TTATATTCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTC</left_flank>
        <right_flank>TTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTCTTCATCGTGTAATAAGCACATCGTGTTCACTGTGAGTTGAGACATGGATTTTCGAATTCCACATGACATCATTTTGTAATTAGAGGCTACCTAAAAAAAAGAGTATGATTATAGTTTTTAACACTTGGAGTTTACTTACAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGG</canonical>
            <polymorphic>CTTTCTTCATCGTGTAATAAGCACATCGTGTTCACTGTGAGTTGAGACATGGATTTTCGAATTCCACATGACATCATTTTGTAATTAGAGGCTACCTAAAAAAAAGAGTATGATTATAGTTTTTAACACTTGGAGTTTACTTACAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCWTTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGAGACAGAAAAACAGTGAA</pcr_primer_p1>
		<pcr_primer_p2>GTCTTTCTATCGCTTCCAGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGAC</canonical_amplicon>
		<polymorphic_amplicon>AAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCWTTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38371</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>74639</contig_pos>
        <strand>+</strand>
        <context>TTATATTCTT[C/T]TTATAATATG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTT</left_flank>
        <right_flank>TTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTAATAAGCACATCGTGTTCACTGTGAGTTGAGACATGGATTTTCGAATTCCACATGACATCATTTTGTAATTAGAGGCTACCTAAAAAAAAGAGTATGATTATAGTTTTTAACACTTGGAGTTTACTTACAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATT</canonical>
            <polymorphic>GTGTAATAAGCACATCGTGTTCACTGTGAGTTGAGACATGGATTTTCGAATTCCACATGACATCATTTTGTAATTAGAGGCTACCTAAAAAAAAGAGTATGATTATAGTTTTTAACACTTGGAGTTTACTTACAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTYTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGAGACAGAAAAACAGTGAA</pcr_primer_p1>
		<pcr_primer_p2>GTCTTTCTATCGCTTCCAGAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGAC</canonical_amplicon>
		<polymorphic_amplicon>AAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTYTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38372</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>74675</contig_pos>
        <strand>+</strand>
        <context>CAGATCTTTC[A/T]TGTGATGGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTC</left_flank>
        <right_flank>TGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGGATTTTCGAATTCCACATGACATCATTTTGTAATTAGAGGCTACCTAAAAAAAAGAGTATGATTATAGTTTTTAACACTTGGAGTTTACTTACAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAAT</canonical>
            <polymorphic>CATGGATTTTCGAATTCCACATGACATCATTTTGTAATTAGAGGCTACCTAAAAAAAAGAGTATGATTATAGTTTTTAACACTTGGAGTTTACTTACAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCWTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGTTCAGAGGCTTCTACTAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTGACTTTCGGTCTTTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTT</canonical_amplicon>
		<polymorphic_amplicon>ACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCWTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38373</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>74686</contig_pos>
        <strand>+</strand>
        <context>TGTGATGGAT[A/G]GATGATGATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGAT</left_flank>
        <right_flank>GATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTCCACATGACATCATTTTGTAATTAGAGGCTACCTAAAAAAAAGAGTATGATTATAGTTTTTAACACTTGGAGTTTACTTACAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTG</canonical>
            <polymorphic>GAATTCCACATGACATCATTTTGTAATTAGAGGCTACCTAAAAAAAAGAGTATGATTATAGTTTTTAACACTTGGAGTTTACTTACAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATRGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGTTCAGAGGCTTCTACTAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTGACTTTCGGTCTTTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTT</canonical_amplicon>
		<polymorphic_amplicon>ACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATRGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38374</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>74697</contig_pos>
        <strand>+</strand>
        <context>GATGATGATG[A/G]CAGRAKGAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATG</left_flank>
        <right_flank>CAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACATCATTTTGTAATTAGAGGCTACCTAAAAAAAAGAGTATGATTATAGTTTTTAACACTTGGAGTTTACTTACAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATT</canonical>
            <polymorphic>GACATCATTTTGTAATTAGAGGCTACCTAAAAAAAAGAGTATGATTATAGTTTTTAACACTTGGAGTTTACTTACAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGRCAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGTTCAGAGGCTTCTACTAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTGACTTTCGGTCTTTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTT</canonical_amplicon>
		<polymorphic_amplicon>ACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGRCAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38375</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>74701</contig_pos>
        <strand>+</strand>
        <context>ATGATGRCAG[A/G]AKGAGGGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAG</left_flank>
        <right_flank>AGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATTTTGTAATTAGAGGCTACCTAAAAAAAAGAGTATGATTATAGTTTTTAACACTTGGAGTTTACTTACAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACT</canonical>
            <polymorphic>TCATTTTGTAATTAGAGGCTACCTAAAAAAAAGAGTATGATTATAGTTTTTAACACTTGGAGTTTACTTACAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGRAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGTTCAGAGGCTTCTACTAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTGACTTTCGGTCTTTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTT</canonical_amplicon>
		<polymorphic_amplicon>ACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGRAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38376</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>74703</contig_pos>
        <strand>+</strand>
        <context>GATGRCAGRA[G/T]GAGGGAATCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAA</left_flank>
        <right_flank>GAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTGTAATTAGAGGCTACCTAAAAAAAAGAGTATGATTATAGTTTTTAACACTTGGAGTTTACTTACAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAG</canonical>
            <polymorphic>ATTTTGTAATTAGAGGCTACCTAAAAAAAAGAGTATGATTATAGTTTTTAACACTTGGAGTTTACTTACAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAKGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGTTCAGAGGCTTCTACTAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTGACTTTCGGTCTTTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTT</canonical_amplicon>
		<polymorphic_amplicon>ACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAKGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38377</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>74715</contig_pos>
        <strand>+</strand>
        <context>AGGGAATCCG[G/T]AAAAAAGCAT</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCG</left_flank>
        <right_flank>AAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGGCTACCTAAAAAAAAGAGTATGATTATAGTTTTTAACACTTGGAGTTTACTTACAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCG</canonical>
            <polymorphic>GAGGCTACCTAAAAAAAAGAGTATGATTATAGTTTTTAACACTTGGAGTTTACTTACAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGKAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>321 177 174 139 67 53 39 18 12</canonical_bands>
                <polymorphic_bands>321 227 177 139 67 39 18 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGTTCAGAGGCTTCTACTAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTGACTTTCGGTCTTTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTT</canonical_amplicon>
		<polymorphic_amplicon>ACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGKAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38378</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>74727</contig_pos>
        <strand></strand>
        <context>AAAAAGCATT[G/A]GAGGATTRAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATT</left_flank>
        <right_flank>GAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAGAGTATGATTATAGTTTTTAACACTTGGAGTTTACTTACAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAAT</canonical>
            <polymorphic>AAAAAAGAGTATGATTATAGTTTTTAACACTTGGAGTTTACTTACAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTRGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGTTCAGAGGCTTCTACTAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTGACTTTCGGTCTTTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTT</canonical_amplicon>
		<polymorphic_amplicon>ACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTRGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38379</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>74735</contig_pos>
        <strand></strand>
        <context>TTRGAGGATT[A/G]AAAAKCAGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATT</left_flank>
        <right_flank>AAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATGATTATAGTTTTTAACACTTGGAGTTTACTTACAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAATCAAACGTA</canonical>
            <polymorphic>GTATGATTATAGTTTTTAACACTTGGAGTTTACTTACAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTRAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAATCAAACGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>219 184 171 92 91 65 55 41 39 27 16</canonical_bands>
                <polymorphic_bands>403 171 92 91 65 55 41 39 27 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGTTCAGAGGCTTCTACTAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTGACTTTCGGTCTTTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTT</canonical_amplicon>
		<polymorphic_amplicon>ACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTRAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38380</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>74740</contig_pos>
        <strand></strand>
        <context>GGATTRAAAA[G/T]CAGCATGCGT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAA</left_flank>
        <right_flank>CAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTATAGTTTTTAACACTTGGAGTTTACTTACAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAATCAAACGTATTCCT</canonical>
            <polymorphic>ATTATAGTTTTTAACACTTGGAGTTTACTTACAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAKCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAATCAAACGTATTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGTTCAGAGGCTTCTACTAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTGACTTTCGGTCTTTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTT</canonical_amplicon>
		<polymorphic_amplicon>ACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAKCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38381</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>74771</contig_pos>
        <strand>+</strand>
        <context>GGTAATCTAG[C/T]CRATTCGAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAG</left_flank>
        <right_flank>CAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAATCAAACGTATTCCTGTTCAGACGTAAAACGTTTCTTATCGTCTCG</canonical>
            <polymorphic>CAAAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGYCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAATCAAACGTATTCCTGTTCAGACGTAAAACGTTTCTTATCGTCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGTTCAGAGGCTTCTACTAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTGACTTTCGGTCTTTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTT</canonical_amplicon>
		<polymorphic_amplicon>ACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGYCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38382</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>74773</contig_pos>
        <strand>+</strand>
        <context>TAATCTAGYC[A/G]ATTCGAAGAR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTC</left_flank>
        <right_flank>ATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAATCAAACGTATTCCTGTTCAGACGTAAAACGTTTCTTATCGTCTCGAA</canonical>
            <polymorphic>AAGAAATCGGAAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCRATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAATCAAACGTATTCCTGTTCAGACGTAAAACGTTTCTTATCGTCTCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>239 222 150 93 59 59 58 46 32 22 12 8</canonical_bands>
                <polymorphic_bands>239 222 208 93 59 59 46 32 22 12 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGTTCAGAGGCTTCTACTAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATTGACTTTCGGTCTTTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>ACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTT</canonical_amplicon>
		<polymorphic_amplicon>ACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCRATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38383</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>74783</contig_pos>
        <strand>+</strand>
        <context>RATTCGAAGA[A/G]TGAGGGTTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGA</left_flank>
        <right_flank>TGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAATCAAACGTATTCCTGTTCAGACGTAAAACGTTTCTTATCGTCTCGAATCTTTCTGAT</canonical>
            <polymorphic>AAACGATGTTAACATACGGCTGAATGAAATCTTCCACTGCAAAAAAGTTAATTGGATAATCTCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGARTGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAATCAAACGTATTCCTGTTCAGACGTAAAACGTTTCTTATCGTCTCGAATCTTTCTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGTTCAGAGGCTTCTACTAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAATTGACTTTCGGTCTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>ACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTT</canonical_amplicon>
		<polymorphic_amplicon>ACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGARTGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38384</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>74844</contig_pos>
        <strand>+</strand>
        <context>TTTTGAAATA[C/T]CATTGGGGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATA</left_flank>
        <right_flank>CATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAATCAAACGTATTCCTGTTCAGACGTAAAACGTTTCTTATCGTCTCGAATCTTTCTGATCTGTGATGAGGGCATACCTGCAATGGCGGATTTTAAGGGAACAAAAAACATGGAAAATTTG</canonical>
            <polymorphic>TCAACAACTTTTTTTTGAAACTCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATAYCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAATCAAACGTATTCCTGTTCAGACGTAAAACGTTTCTTATCGTCTCGAATCTTTCTGATCTGTGATGAGGGCATACCTGCAATGGCGGATTTTAAGGGAACAAAAAACATGGAAAATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGGTTGTTGAAAACTGTCT</pcr_primer_p1>
		<pcr_primer_p2>TTTTACACCTTGAATCACCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>156</pcr_amplicon_size>
		<canonical_amplicon>GAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATAYCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38385</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>74865</contig_pos>
        <strand>+</strand>
        <context>TTTGATGTTG[C/T]CATAGAACGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTG</left_flank>
        <right_flank>CATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAATCAAACGTATTCCTGTTCAGACGTAAAACGTTTCTTATCGTCTCGAATCTTTCTGATCTGTGATGAGGGCATACCTGCAATGGCGGATTTTAAGGGAACAAAAAACATGGAAAATTTGAATGGAGATTGGAACATCCAA</canonical>
            <polymorphic>TCACCTCCTGTGAAATTGACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGYCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAATCAAACGTATTCCTGTTCAGACGTAAAACGTTTCTTATCGTCTCGAATCTTTCTGATCTGTGATGAGGGCATACCTGCAATGGCGGATTTTAAGGGAACAAAAAACATGGAAAATTTGAATGGAGATTGGAACATCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGGTTGTTGAAAACTGTCT</pcr_primer_p1>
		<pcr_primer_p2>TTTTACACCTTGAATCACCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>156</pcr_amplicon_size>
		<canonical_amplicon>GAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGYCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38386</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>74882</contig_pos>
        <strand>+</strand>
        <context>ACGTCTTCTG[C/T]AATCSGAYTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTG</left_flank>
        <right_flank>AATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAATCAAACGTATTCCTGTTCAGACGTAAAACGTTTCTTATCGTCTCGAATCTTTCTGATCTGTGATGAGGGCATACCTGCAATGGCGGATTTTAAGGGAACAAAAAACATGGAAAATTTGAATGGAGATTGGAACATCCAAACCGGAACAAACTGGAA</canonical>
            <polymorphic>GACCTCTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGYAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAATCAAACGTATTCCTGTTCAGACGTAAAACGTTTCTTATCGTCTCGAATCTTTCTGATCTGTGATGAGGGCATACCTGCAATGGCGGATTTTAAGGGAACAAAAAACATGGAAAATTTGAATGGAGATTGGAACATCCAAACCGGAACAAACTGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>303 282 129 119 88 79</canonical_bands>
                <polymorphic_bands>303 282 248 88 79</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGGTTGTTGAAAACTGTCT</pcr_primer_p1>
		<pcr_primer_p2>TTTTACACCTTGAATCACCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>156</pcr_amplicon_size>
		<canonical_amplicon>GAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGYAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38387</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>74887</contig_pos>
        <strand>+</strand>
        <context>TTCTGYAATC[C/G]GAYTTYACCT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATC</left_flank>
        <right_flank>GATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAATCAAACGTATTCCTGTTCAGACGTAAAACGTTTCTTATCGTCTCGAATCTTTCTGATCTGTGATGAGGGCATACCTGCAATGGCGGATTTTAAGGGAACAAAAAACATGGAAAATTTGAATGGAGATTGGAACATCCAAACCGGAACAAACTGGAACGGGT</canonical>
            <polymorphic>CTTTACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCSGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAATCAAACGTATTCCTGTTCAGACGTAAAACGTTTCTTATCGTCTCGAATCTTTCTGATCTGTGATGAGGGCATACCTGCAATGGCGGATTTTAAGGGAACAAAAAACATGGAAAATTTGAATGGAGATTGGAACATCCAAACCGGAACAAACTGGAACGGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGGTTGTTGAAAACTGTCT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTACACCTTGAATCACCTT</pcr_primer_p2>
		<pcr_amplicon_size>157</pcr_amplicon_size>
		<canonical_amplicon>GAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCSGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38388</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>74890</contig_pos>
        <strand>+</strand>
        <context>TGYAATCSGA[C/T]TTYACCTCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGA</left_flank>
        <right_flank>TTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAATCAAACGTATTCCTGTTCAGACGTAAAACGTTTCTTATCGTCTCGAATCTTTCTGATCTGTGATGAGGGCATACCTGCAATGGCGGATTTTAAGGGAACAAAAAACATGGAAAATTTGAATGGAGATTGGAACATCCAAACCGGAACAAACTGGAACGGGTTGT</canonical>
            <polymorphic>TACCATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGAYTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAATCAAACGTATTCCTGTTCAGACGTAAAACGTTTCTTATCGTCTCGAATCTTTCTGATCTGTGATGAGGGCATACCTGCAATGGCGGATTTTAAGGGAACAAAAAACATGGAAAATTTGAATGGAGATTGGAACATCCAAACCGGAACAAACTGGAACGGGTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGACCGAAAGTCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAACAAATTATGGAATTTAACAAA</pcr_primer_p2>
		<pcr_amplicon_size>374</pcr_amplicon_size>
		<canonical_amplicon>AAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGAYTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38389</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>74893</contig_pos>
        <strand>+</strand>
        <context>AATCSGAYTT[C/T]ACCTCTGACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTT</left_flank>
        <right_flank>ACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAATCAAACGTATTCCTGTTCAGACGTAAAACGTTTCTTATCGTCTCGAATCTTTCTGATCTGTGATGAGGGCATACCTGCAATGGCGGATTTTAAGGGAACAAAAAACATGGAAAATTTGAATGGAGATTGGAACATCCAAACCGGAACAAACTGGAACGGGTTGTTGT</canonical>
            <polymorphic>CATCCAAAATTACTGTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTYACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAATCAAACGTATTCCTGTTCAGACGTAAAACGTTTCTTATCGTCTCGAATCTTTCTGATCTGTGATGAGGGCATACCTGCAATGGCGGATTTTAAGGGAACAAAAAACATGGAAAATTTGAATGGAGATTGGAACATCCAAACCGGAACAAACTGGAACGGGTTGTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGACCGAAAGTCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAACAAATTATGGAATTTAACAAA</pcr_primer_p2>
		<pcr_amplicon_size>374</pcr_amplicon_size>
		<canonical_amplicon>AAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTYACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38390</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>74907</contig_pos>
        <strand>+</strand>
        <context>TCTGACACGA[A/C]GYCARCCAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGA</left_flank>
        <right_flank>GTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAATCAAACGTATTCCTGTTCAGACGTAAAACGTTTCTTATCGTCTCGAATCTTTCTGATCTGTGATGAGGGCATACCTGCAATGGCGGATTTTAAGGGAACAAAAAACATGGAAAATTTGAATGGAGATTGGAACATCCAAACCGGAACAAACTGGAACGGGTTGTTGTTGTTGTCGAGCGTT</canonical>
            <polymorphic>GTATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAMGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAATCAAACGTATTCCTGTTCAGACGTAAAACGTTTCTTATCGTCTCGAATCTTTCTGATCTGTGATGAGGGCATACCTGCAATGGCGGATTTTAAGGGAACAAAAAACATGGAAAATTTGAATGGAGATTGGAACATCCAAACCGGAACAAACTGGAACGGGTTGTTGTTGTTGTCGAGCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGACCGAAAGTCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAACAAATTATGGAATTTAACAAA</pcr_primer_p2>
		<pcr_amplicon_size>374</pcr_amplicon_size>
		<canonical_amplicon>AAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAMGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38391</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>74909</contig_pos>
        <strand>+</strand>
        <context>TGACACGAMG[C/T]CARCCAGTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAG</left_flank>
        <right_flank>CAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAATCAAACGTATTCCTGTTCAGACGTAAAACGTTTCTTATCGTCTCGAATCTTTCTGATCTGTGATGAGGGCATACCTGCAATGGCGGATTTTAAGGGAACAAAAAACATGGAAAATTTGAATGGAGATTGGAACATCCAAACCGGAACAAACTGGAACGGGTTGTTGTTGTTGTCGAGCGTTGG</canonical>
            <polymorphic>ATATCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGYCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAATCAAACGTATTCCTGTTCAGACGTAAAACGTTTCTTATCGTCTCGAATCTTTCTGATCTGTGATGAGGGCATACCTGCAATGGCGGATTTTAAGGGAACAAAAAACATGGAAAATTTGAATGGAGATTGGAACATCCAAACCGGAACAAACTGGAACGGGTTGTTGTTGTTGTCGAGCGTTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNNNGTC</site>
                <isoschizomers>
                    <enzyme>AhdI</enzyme>
                    <enzyme>AspEI</enzyme>
                    <enzyme>Eam1105I</enzyme>
                    <enzyme>EclHKI</enzyme>
                    <enzyme>NruGI</enzyme>
                </isoschizomers>
                <canonical_bands>504 416 80</canonical_bands>
                <polymorphic_bands>584 416</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGACCGAAAGTCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAACAAATTATGGAATTTAACAAA</pcr_primer_p2>
		<pcr_amplicon_size>374</pcr_amplicon_size>
		<canonical_amplicon>AAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGYCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38392</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>74912</contig_pos>
        <strand>+</strand>
        <context>CACGAMGYCA[A/G]CCAGTTAAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCA</left_flank>
        <right_flank>CCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAATCAAACGTATTCCTGTTCAGACGTAAAACGTTTCTTATCGTCTCGAATCTTTCTGATCTGTGATGAGGGCATACCTGCAATGGCGGATTTTAAGGGAACAAAAAACATGGAAAATTTGAATGGAGATTGGAACATCCAAACCGGAACAAACTGGAACGGGTTGTTGTTGTTGTCGAGCGTTGGATA</canonical>
            <polymorphic>TCTTGCTTCTTTAAAAATAAAACTATACAAGTAAGTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCARCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAATCAAACGTATTCCTGTTCAGACGTAAAACGTTTCTTATCGTCTCGAATCTTTCTGATCTGTGATGAGGGCATACCTGCAATGGCGGATTTTAAGGGAACAAAAAACATGGAAAATTTGAATGGAGATTGGAACATCCAAACCGGAACAAACTGGAACGGGTTGTTGTTGTTGTCGAGCGTTGGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>305 200 114 105 81 81 58 44 6 6</canonical_bands>
                <polymorphic_bands>363 200 114 105 81 81 44 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGACCGAAAGTCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAACAAATTATGGAATTTAACAAA</pcr_primer_p2>
		<pcr_amplicon_size>374</pcr_amplicon_size>
		<canonical_amplicon>AAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCARCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38393</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>74946</contig_pos>
        <strand>+</strand>
        <context>TAAAAAAGTT[A/T]AAAAAAAGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTT</left_flank>
        <right_flank>AAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAATCAAACGTATTCCTGTTCAGACGTAAAACGTTTCTTATCGTCTCGAATCTTTCTGATCTGTGATGAGGGCATACCTGCAATGGCGGATTTTAAGGGAACAAAAAACATGGAAAATTTGAATGGAGATTGGAACATCCAAACCGGAACAAACTGGAACGGGTTGTTGTTGTTGTCGAGCGTTGGATAGACGCTAATACGACGTTTGGAACAATGAGCTTGA</canonical>
            <polymorphic>GTGCCTAGAACCAAACTTCCAATGCACAACGGAAAGATGTAGTTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTWAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAATCAAACGTATTCCTGTTCAGACGTAAAACGTTTCTTATCGTCTCGAATCTTTCTGATCTGTGATGAGGGCATACCTGCAATGGCGGATTTTAAGGGAACAAAAAACATGGAAAATTTGAATGGAGATTGGAACATCCAAACCGGAACAAACTGGAACGGGTTGTTGTTGTTGTCGAGCGTTGGATAGACGCTAATACGACGTTTGGAACAATGAGCTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>219 184 171 146 130 68 55 27</canonical_bands>
                <polymorphic_bands>219 198 184 146 130 68 55</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGACCGAAAGTCAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAACAAATTATGGAATTTAACAAA</pcr_primer_p2>
		<pcr_amplicon_size>374</pcr_amplicon_size>
		<canonical_amplicon>AAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTWAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38394</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>74988</contig_pos>
        <strand></strand>
        <context>ttgagcttat[C/T]tccattttta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTAT</left_flank>
        <right_flank>TCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAATCAAACGTATTCCTGTTCAGACGTAAAACGTTTCTTATCGTCTCGAATCTTTCTGATCTGTGATGAGGGCATACCTGCAATGGCGGATTTTAAGGGAACAAAAAACATGGAAAATTTGAATGGAGATTGGAACATCCAAACCGGAACAAACTGGAACGGGTTGTTGTTGTTGTCGAGCGTTGGATAGACGCTAATACGACGTTTGGAACAATGAGCTTGAGATCAGGGCATTCCTTAACAGGAAATAATGCTTCATGAGACT</canonical>
            <polymorphic>TTTCTAAAAACATTTCAGTCTAAGTTTAAATATATCAGCTCTCACACTCACCTCCAGAACATGGTGATGTTTCAACACTAGACGGAAATGAGACAGAAAAACAGTGAAACGTTCAGAGGCTTCTACTAAATCAGAATTCATTATATTCTTTTTATAATATGGGAATATCTCCGAAACAGATCTTTCTTGTGATGGATAGATGATGATGACAGAAGGAGGGAATCCGAAAAAAAGCATTGGAGGATTAAAAAGCAGCATGCGTTGCAAAGCGGGGTAATCTAGTCAATTCGAAGAATGAGGGTTGTTGAAAACTGTCTGGAAGCGATAGAAAGACCGAAAGTCAATTTTTGAAATATCATTGGGGTGTTTGATGTTGCCATAGAACGTCTTCTGCAATCGGATTTTACCTCTGACACGAAGTCAGCCAGTTAAAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATYTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTCCCATATTCACTAGATGTTTCAGCCGTGACATCTGAATCAAACGTATTCCTGTTCAGACGTAAAACGTTTCTTATCGTCTCGAATCTTTCTGATCTGTGATGAGGGCATACCTGCAATGGCGGATTTTAAGGGAACAAAAAACATGGAAAATTTGAATGGAGATTGGAACATCCAAACCGGAACAAACTGGAACGGGTTGTTGTTGTTGTCGAGCGTTGGATAGACGCTAATACGACGTTTGGAACAATGAGCTTGAGATCAGGGCATTCCTTAACAGGAAATAATGCTTCATGAGACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGTGATTCAAGGTGTAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GAAACAAATTATGGAATTTAACAAA</pcr_primer_p2>
		<pcr_amplicon_size>271</pcr_amplicon_size>
		<canonical_amplicon>AAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATCTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTC</canonical_amplicon>
		<polymorphic_amplicon>AAGGTGATTCAAGGTGTAAAAAAGTTAAAAAAAAGGTCCCACACTGTCCAGCTAAAGCTTGAGCTTATYTCCATTTTTATGCATGATATCAAAAATGTGTCAATAGACAAAACATTTCTGATATCATGATAAACAACTTATCAGCTGACAAATTAGTTATATCTTTTAGAAGTGCCGAGAAAAATTGGCTCAAAGTTAACAAATACGGGATCCTTCTATTATAGGTTTTACGGTACATTACAATTTTTTGTTAAATTCCATAATTTGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38398</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>76493</contig_pos>
        <strand></strand>
        <context>taaacatgtg[G/A]tagaaggcct</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGTGTATGAATTTCTTCCAAAGTTTCTATAGGAAACACCGTAAACATGTG</left_flank>
        <right_flank>TAGAAGGCCTCCACACAATCAAGCTGATTTTTTACTTGTCTTATATTCAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGTATATTTTTATGTTTGATGGGAAAAAAATCCTGAAAAAAAGACGAAAAATAGAAATTTCCGTTTCCGTTTCCGTTTTAGTTTTCCGTTTTCCGCCCGATTTTTGAAGATTTTTCCGTTTTGGTTAATTTACGATTCCGTTTCCTTTTCCATTTTATTTTCCGTTTCCGTAAAAGTTAAATTTGATTTCTGTTTCCGTTTCCGTTTTTTTGGCATTTTCAAAAATAACATACAATACGGAGAATTGTATCTTAACGAAGTATTGTCTGTTTAAAATTTGACCAAAGTCTCTTTAATCATCTTCAAAATGATTTATTTCACATTCGTGATTGTTTTCAGTTTTTTTTTCCAGATAGAAAAAATATCCAAAAATCATAAATATTCCAACAAGAGATTTTTTTTGCGAAAAAATACTTTCACCACTGGTGATATAATTTCAAAAGGAACAGTGTATGAATTTCTTCCAAAGTTTCTATAGGAAACACCGTAAACATGTGGTAGAAGGCCTCCACACAATCAAGCTGATTTTTTACTTGTCTTATATTCAAGATATCAAGAATGTGACAACTGACAAAACATTTCTGATATTATGATAAACAATTTTTCAGTTGGCAACTTTTTCATATCTCAGACAGGGACCGAGATAAATTGGCTCAAAGTTAAAAGTTGGAAAGTCCTTCTATTCAATGTTTCACGGTGTGTAGAATGATTCGAAACAAGAAGATCAATAGAAAAGATAAAATTTGATGGGAGAATCTGTAAAGGTGTGAGAAACCGGCTACGGGAAGAATTTAAGAGAAGGGATTGTCGATCATCCTACAGAAAGATTTTTAGATTTTCTTCGTCTTTGAATTTGATCTTTTGATGTTTGAGGTCTTCCTGGAGCTTCCCGGAAACTGAACAGTATAAACCTGTATTTGAAAGGTCCCTGGAACTGAAGGATCCAATAATCAAAGTTCTCTATGAAGTCTCCCAATGAAGTCTCTCCTAGAGACTTC</canonical>
            <polymorphic>AGTGTATATTTTTATGTTTGATGGGAAAAAAATCCTGAAAAAAAGACGAAAAATAGAAATTTCCGTTTCCGTTTCCGTTTTAGTTTTCCGTTTTCCGCCCGATTTTTGAAGATTTTTCCGTTTTGGTTAATTTACGATTCCGTTTCCTTTTCCATTTTATTTTCCGTTTCCGTAAAAGTTAAATTTGATTTCTGTTTCCGTTTCCGTTTTTTTGGCATTTTCAAAAATAACATACAATACGGAGAATTGTATCTTAACGAAGTATTGTCTGTTTAAAATTTGACCAAAGTCTCTTTAATCATCTTCAAAATGATTTATTTCACATTCGTGATTGTTTTCAGTTTTTTTTTCCAGATAGAAAAAATATCCAAAAATCATAAATATTCCAACAAGAGATTTTTTTTGCGAAAAAATACTTTCACCACTGGTGATATAATTTCAAAAGGAACAGTGTATGAATTTCTTCCAAAGTTTCTATAGGAAACACCGTAAACATGTGRTAGAAGGCCTCCACACAATCAAGCTGATTTTTTACTTGTCTTATATTCAAGATATCAAGAATGTGACAACTGACAAAACATTTCTGATATTATGATAAACAATTTTTCAGTTGGCAACTTTTTCATATCTCAGACAGGGACCGAGATAAATTGGCTCAAAGTTAAAAGTTGGAAAGTCCTTCTATTCAATGTTTCACGGTGTGTAGAATGATTCGAAACAAGAAGATCAATAGAAAAGATAAAATTTGATGGGAGAATCTGTAAAGGTGTGAGAAACCGGCTACGGGAAGAATTTAAGAGAAGGGATTGTCGATCATCCTACAGAAAGATTTTTAGATTTTCTTCGTCTTTGAATTTGATCTTTTGATGTTTGAGGTCTTCCTGGAGCTTCCCGGAAACTGAACAGTATAAACCTGTATTTGAAAGGTCCCTGGAACTGAAGGATCCAATAATCAAAGTTCTCTATGAAGTCTCCCAATGAAGTCTCTCCTAGAGACTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGAACAGTGTATGAATTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>TCTTTTCTATTGATCTTCTTGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>297</pcr_amplicon_size>
		<canonical_amplicon>AAGGAACAGTGTATGAATTTCTTCCAAAGTTTCTATAGGAAACACCGTAAACATGTGGTAGAAGGCCTCCACACAATCAAGCTGATTTTTTACTTGTCTTATATTCAAGATATCAAGAATGTGACAACTGACAAAACATTTCTGATATTATGATAAACAATTTTTCAGTTGGCAACTTTTTCATATCTCAGACAGGGACCGAGATAAATTGGCTCAAAGTTAAAAGTTGGAAAGTCCTTCTATTCAATGTTTCACGGTGTGTAGAATGATTCGAAACAAGAAGATCAATAGAAAAGA</canonical_amplicon>
		<polymorphic_amplicon>AAGGAACAGTGTATGAATTTCTTCCAAAGTTTCTATAGGAAACACCGTAAACATGTGRTAGAAGGCCTCCACACAATCAAGCTGATTTTTTACTTGTCTTATATTCAAGATATCAAGAATGTGACAACTGACAAAACATTTCTGATATTATGATAAACAATTTTTCAGTTGGCAACTTTTTCATATCTCAGACAGGGACCGAGATAAATTGGCTCAAAGTTAAAAGTTGGAAAGTCCTTCTATTCAATGTTTCACGGTGTGTAGAATGATTCGAAACAAGAAGATCAATAGAAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38399</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>76527</contig_pos>
        <strand></strand>
        <context>ctgatttttt[A/T]cttgtcttat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACACCGTAAACATGTGGTAGAAGGCCTCCACACAATCAAGCTGATTTTTT</left_flank>
        <right_flank>CTTGTCTTATATTCAAGATATCAAGAATGTGACAACTGACAAAACATTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAAAAAAAGACGAAAAATAGAAATTTCCGTTTCCGTTTCCGTTTTAGTTTTCCGTTTTCCGCCCGATTTTTGAAGATTTTTCCGTTTTGGTTAATTTACGATTCCGTTTCCTTTTCCATTTTATTTTCCGTTTCCGTAAAAGTTAAATTTGATTTCTGTTTCCGTTTCCGTTTTTTTGGCATTTTCAAAAATAACATACAATACGGAGAATTGTATCTTAACGAAGTATTGTCTGTTTAAAATTTGACCAAAGTCTCTTTAATCATCTTCAAAATGATTTATTTCACATTCGTGATTGTTTTCAGTTTTTTTTTCCAGATAGAAAAAATATCCAAAAATCATAAATATTCCAACAAGAGATTTTTTTTGCGAAAAAATACTTTCACCACTGGTGATATAATTTCAAAAGGAACAGTGTATGAATTTCTTCCAAAGTTTCTATAGGAAACACCGTAAACATGTGGTAGAAGGCCTCCACACAATCAAGCTGATTTTTTACTTGTCTTATATTCAAGATATCAAGAATGTGACAACTGACAAAACATTTCTGATATTATGATAAACAATTTTTCAGTTGGCAACTTTTTCATATCTCAGACAGGGACCGAGATAAATTGGCTCAAAGTTAAAAGTTGGAAAGTCCTTCTATTCAATGTTTCACGGTGTGTAGAATGATTCGAAACAAGAAGATCAATAGAAAAGATAAAATTTGATGGGAGAATCTGTAAAGGTGTGAGAAACCGGCTACGGGAAGAATTTAAGAGAAGGGATTGTCGATCATCCTACAGAAAGATTTTTAGATTTTCTTCGTCTTTGAATTTGATCTTTTGATGTTTGAGGTCTTCCTGGAGCTTCCCGGAAACTGAACAGTATAAACCTGTATTTGAAAGGTCCCTGGAACTGAAGGATCCAATAATCAAAGTTCTCTATGAAGTCTCCCAATGAAGTCTCTCCTAGAGACTTCAGGATAAATAGAAGGGCCGGTCATTTTGATACGG</canonical>
            <polymorphic>CTGAAAAAAAGACGAAAAATAGAAATTTCCGTTTCCGTTTCCGTTTTAGTTTTCCGTTTTCCGCCCGATTTTTGAAGATTTTTCCGTTTTGGTTAATTTACGATTCCGTTTCCTTTTCCATTTTATTTTCCGTTTCCGTAAAAGTTAAATTTGATTTCTGTTTCCGTTTCCGTTTTTTTGGCATTTTCAAAAATAACATACAATACGGAGAATTGTATCTTAACGAAGTATTGTCTGTTTAAAATTTGACCAAAGTCTCTTTAATCATCTTCAAAATGATTTATTTCACATTCGTGATTGTTTTCAGTTTTTTTTTCCAGATAGAAAAAATATCCAAAAATCATAAATATTCCAACAAGAGATTTTTTTTGCGAAAAAATACTTTCACCACTGGTGATATAATTTCAAAAGGAACAGTGTATGAATTTCTTCCAAAGTTTCTATAGGAAACACCGTAAACATGTGGTAGAAGGCCTCCACACAATCAAGCTGATTTTTTWCTTGTCTTATATTCAAGATATCAAGAATGTGACAACTGACAAAACATTTCTGATATTATGATAAACAATTTTTCAGTTGGCAACTTTTTCATATCTCAGACAGGGACCGAGATAAATTGGCTCAAAGTTAAAAGTTGGAAAGTCCTTCTATTCAATGTTTCACGGTGTGTAGAATGATTCGAAACAAGAAGATCAATAGAAAAGATAAAATTTGATGGGAGAATCTGTAAAGGTGTGAGAAACCGGCTACGGGAAGAATTTAAGAGAAGGGATTGTCGATCATCCTACAGAAAGATTTTTAGATTTTCTTCGTCTTTGAATTTGATCTTTTGATGTTTGAGGTCTTCCTGGAGCTTCCCGGAAACTGAACAGTATAAACCTGTATTTGAAAGGTCCCTGGAACTGAAGGATCCAATAATCAAAGTTCTCTATGAAGTCTCCCAATGAAGTCTCTCCTAGAGACTTCAGGATAAATAGAAGGGCCGGTCATTTTGATACGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGAATTTCTTCCAAAGTTTCTAT</pcr_primer_p1>
		<pcr_primer_p2>TCTTTTCTATTGATCTTCTTGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>ATGAATTTCTTCCAAAGTTTCTATAGGAAACACCGTAAACATGTGGTAGAAGGCCTCCACACAATCAAGCTGATTTTTTACTTGTCTTATATTCAAGATATCAAGAATGTGACAACTGACAAAACATTTCTGATATTATGATAAACAATTTTTCAGTTGGCAACTTTTTCATATCTCAGACAGGGACCGAGATAAATTGGCTCAAAGTTAAAAGTTGGAAAGTCCTTCTATTCAATGTTTCACGGTGTGTAGAATGATTCGAAACAAGAAGATCAATAGAAAAGA</canonical_amplicon>
		<polymorphic_amplicon>ATGAATTTCTTCCAAAGTTTCTATAGGAAACACCGTAAACATGTGGTAGAAGGCCTCCACACAATCAAGCTGATTTTTTWCTTGTCTTATATTCAAGATATCAAGAATGTGACAACTGACAAAACATTTCTGATATTATGATAAACAATTTTTCAGTTGGCAACTTTTTCATATCTCAGACAGGGACCGAGATAAATTGGCTCAAAGTTAAAAGTTGGAAAGTCCTTCTATTCAATGTTTCACGGTGTGTAGAATGATTCGAAACAAGAAGATCAATAGAAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38400</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>76559</contig_pos>
        <strand></strand>
        <context>caagaatgtg[A/T]caactgacaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAATCAAGCTGATTTTTTACTTGTCTTATATTCAAGATATCAAGAATGTG</left_flank>
        <right_flank>CAACTGACAAAACATTTCTGATATTATGATAAACAATTTTTCAGTTGGCA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCGTTTCCGTTTTAGTTTTCCGTTTTCCGCCCGATTTTTGAAGATTTTTCCGTTTTGGTTAATTTACGATTCCGTTTCCTTTTCCATTTTATTTTCCGTTTCCGTAAAAGTTAAATTTGATTTCTGTTTCCGTTTCCGTTTTTTTGGCATTTTCAAAAATAACATACAATACGGAGAATTGTATCTTAACGAAGTATTGTCTGTTTAAAATTTGACCAAAGTCTCTTTAATCATCTTCAAAATGATTTATTTCACATTCGTGATTGTTTTCAGTTTTTTTTTCCAGATAGAAAAAATATCCAAAAATCATAAATATTCCAACAAGAGATTTTTTTTGCGAAAAAATACTTTCACCACTGGTGATATAATTTCAAAAGGAACAGTGTATGAATTTCTTCCAAAGTTTCTATAGGAAACACCGTAAACATGTGGTAGAAGGCCTCCACACAATCAAGCTGATTTTTTACTTGTCTTATATTCAAGATATCAAGAATGTGACAACTGACAAAACATTTCTGATATTATGATAAACAATTTTTCAGTTGGCAACTTTTTCATATCTCAGACAGGGACCGAGATAAATTGGCTCAAAGTTAAAAGTTGGAAAGTCCTTCTATTCAATGTTTCACGGTGTGTAGAATGATTCGAAACAAGAAGATCAATAGAAAAGATAAAATTTGATGGGAGAATCTGTAAAGGTGTGAGAAACCGGCTACGGGAAGAATTTAAGAGAAGGGATTGTCGATCATCCTACAGAAAGATTTTTAGATTTTCTTCGTCTTTGAATTTGATCTTTTGATGTTTGAGGTCTTCCTGGAGCTTCCCGGAAACTGAACAGTATAAACCTGTATTTGAAAGGTCCCTGGAACTGAAGGATCCAATAATCAAAGTTCTCTATGAAGTCTCCCAATGAAGTCTCTCCTAGAGACTTCAGGATAAATAGAAGGGCCGGTCATTTTGATACGGATTTTACGGTAAGTTTTTTATAATATAATAAT</canonical>
            <polymorphic>TTCCGTTTCCGTTTTAGTTTTCCGTTTTCCGCCCGATTTTTGAAGATTTTTCCGTTTTGGTTAATTTACGATTCCGTTTCCTTTTCCATTTTATTTTCCGTTTCCGTAAAAGTTAAATTTGATTTCTGTTTCCGTTTCCGTTTTTTTGGCATTTTCAAAAATAACATACAATACGGAGAATTGTATCTTAACGAAGTATTGTCTGTTTAAAATTTGACCAAAGTCTCTTTAATCATCTTCAAAATGATTTATTTCACATTCGTGATTGTTTTCAGTTTTTTTTTCCAGATAGAAAAAATATCCAAAAATCATAAATATTCCAACAAGAGATTTTTTTTGCGAAAAAATACTTTCACCACTGGTGATATAATTTCAAAAGGAACAGTGTATGAATTTCTTCCAAAGTTTCTATAGGAAACACCGTAAACATGTGGTAGAAGGCCTCCACACAATCAAGCTGATTTTTTACTTGTCTTATATTCAAGATATCAAGAATGTGWCAACTGACAAAACATTTCTGATATTATGATAAACAATTTTTCAGTTGGCAACTTTTTCATATCTCAGACAGGGACCGAGATAAATTGGCTCAAAGTTAAAAGTTGGAAAGTCCTTCTATTCAATGTTTCACGGTGTGTAGAATGATTCGAAACAAGAAGATCAATAGAAAAGATAAAATTTGATGGGAGAATCTGTAAAGGTGTGAGAAACCGGCTACGGGAAGAATTTAAGAGAAGGGATTGTCGATCATCCTACAGAAAGATTTTTAGATTTTCTTCGTCTTTGAATTTGATCTTTTGATGTTTGAGGTCTTCCTGGAGCTTCCCGGAAACTGAACAGTATAAACCTGTATTTGAAAGGTCCCTGGAACTGAAGGATCCAATAATCAAAGTTCTCTATGAAGTCTCCCAATGAAGTCTCTCCTAGAGACTTCAGGATAAATAGAAGGGCCGGTCATTTTGATACGGATTTTACGGTAAGTTTTTTATAATATAATAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAATTTCTTCCAAAGTTTCTAT</pcr_primer_p1>
		<pcr_primer_p2>TCTTTTCTATTGATCTTCTTGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>ATGAATTTCTTCCAAAGTTTCTATAGGAAACACCGTAAACATGTGGTAGAAGGCCTCCACACAATCAAGCTGATTTTTTACTTGTCTTATATTCAAGATATCAAGAATGTGACAACTGACAAAACATTTCTGATATTATGATAAACAATTTTTCAGTTGGCAACTTTTTCATATCTCAGACAGGGACCGAGATAAATTGGCTCAAAGTTAAAAGTTGGAAAGTCCTTCTATTCAATGTTTCACGGTGTGTAGAATGATTCGAAACAAGAAGATCAATAGAAAAGA</canonical_amplicon>
		<polymorphic_amplicon>ATGAATTTCTTCCAAAGTTTCTATAGGAAACACCGTAAACATGTGGTAGAAGGCCTCCACACAATCAAGCTGATTTTTTACTTGTCTTATATTCAAGATATCAAGAATGTGWCAACTGACAAAACATTTCTGATATTATGATAAACAATTTTTCAGTTGGCAACTTTTTCATATCTCAGACAGGGACCGAGATAAATTGGCTCAAAGTTAAAAGTTGGAAAGTCCTTCTATTCAATGTTTCACGGTGTGTAGAATGATTCGAAACAAGAAGATCAATAGAAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38401</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>76647</contig_pos>
        <strand></strand>
        <context>agataaattg[G/A]ctcaaagtta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTCAGTTGGCAACTTTTTCATATCTCAGACAGGGACCGAGATAAATTG</left_flank>
        <right_flank>CTCAAAGTTAAAAGTTGGAAAGTCCTTCTATTCAATGTTTCACGGTGTGT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTATTTTCCGTTTCCGTAAAAGTTAAATTTGATTTCTGTTTCCGTTTCCGTTTTTTTGGCATTTTCAAAAATAACATACAATACGGAGAATTGTATCTTAACGAAGTATTGTCTGTTTAAAATTTGACCAAAGTCTCTTTAATCATCTTCAAAATGATTTATTTCACATTCGTGATTGTTTTCAGTTTTTTTTTCCAGATAGAAAAAATATCCAAAAATCATAAATATTCCAACAAGAGATTTTTTTTGCGAAAAAATACTTTCACCACTGGTGATATAATTTCAAAAGGAACAGTGTATGAATTTCTTCCAAAGTTTCTATAGGAAACACCGTAAACATGTGGTAGAAGGCCTCCACACAATCAAGCTGATTTTTTACTTGTCTTATATTCAAGATATCAAGAATGTGACAACTGACAAAACATTTCTGATATTATGATAAACAATTTTTCAGTTGGCAACTTTTTCATATCTCAGACAGGGACCGAGATAAATTGGCTCAAAGTTAAAAGTTGGAAAGTCCTTCTATTCAATGTTTCACGGTGTGTAGAATGATTCGAAACAAGAAGATCAATAGAAAAGATAAAATTTGATGGGAGAATCTGTAAAGGTGTGAGAAACCGGCTACGGGAAGAATTTAAGAGAAGGGATTGTCGATCATCCTACAGAAAGATTTTTAGATTTTCTTCGTCTTTGAATTTGATCTTTTGATGTTTGAGGTCTTCCTGGAGCTTCCCGGAAACTGAACAGTATAAACCTGTATTTGAAAGGTCCCTGGAACTGAAGGATCCAATAATCAAAGTTCTCTATGAAGTCTCCCAATGAAGTCTCTCCTAGAGACTTCAGGATAAATAGAAGGGCCGGTCATTTTGATACGGATTTTACGGTAAGTTTTTTATAATATAATAATTAACGATAACAAAATTCTCATCAGATTGTTCGTAATCATTTAAAATTTCAGATCATTGAATATCCAGTCTGAAAATTTGAAGGTGGCT</canonical>
            <polymorphic>TTTTATTTTCCGTTTCCGTAAAAGTTAAATTTGATTTCTGTTTCCGTTTCCGTTTTTTTGGCATTTTCAAAAATAACATACAATACGGAGAATTGTATCTTAACGAAGTATTGTCTGTTTAAAATTTGACCAAAGTCTCTTTAATCATCTTCAAAATGATTTATTTCACATTCGTGATTGTTTTCAGTTTTTTTTTCCAGATAGAAAAAATATCCAAAAATCATAAATATTCCAACAAGAGATTTTTTTTGCGAAAAAATACTTTCACCACTGGTGATATAATTTCAAAAGGAACAGTGTATGAATTTCTTCCAAAGTTTCTATAGGAAACACCGTAAACATGTGGTAGAAGGCCTCCACACAATCAAGCTGATTTTTTACTTGTCTTATATTCAAGATATCAAGAATGTGACAACTGACAAAACATTTCTGATATTATGATAAACAATTTTTCAGTTGGCAACTTTTTCATATCTCAGACAGGGACCGAGATAAATTGRCTCAAAGTTAAAAGTTGGAAAGTCCTTCTATTCAATGTTTCACGGTGTGTAGAATGATTCGAAACAAGAAGATCAATAGAAAAGATAAAATTTGATGGGAGAATCTGTAAAGGTGTGAGAAACCGGCTACGGGAAGAATTTAAGAGAAGGGATTGTCGATCATCCTACAGAAAGATTTTTAGATTTTCTTCGTCTTTGAATTTGATCTTTTGATGTTTGAGGTCTTCCTGGAGCTTCCCGGAAACTGAACAGTATAAACCTGTATTTGAAAGGTCCCTGGAACTGAAGGATCCAATAATCAAAGTTCTCTATGAAGTCTCCCAATGAAGTCTCTCCTAGAGACTTCAGGATAAATAGAAGGGCCGGTCATTTTGATACGGATTTTACGGTAAGTTTTTTATAATATAATAATTAACGATAACAAAATTCTCATCAGATTGTTCGTAATCATTTAAAATTTCAGATCATTGAATATCCAGTCTGAAAATTTGAAGGTGGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>353 136 131 129 126 107 16 2</canonical_bands>
                <polymorphic_bands>353 257 136 129 107 16 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGAATTTCTTCCAAAGTTTCTAT</pcr_primer_p1>
		<pcr_primer_p2>TCTTTTCTATTGATCTTCTTGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>285</pcr_amplicon_size>
		<canonical_amplicon>ATGAATTTCTTCCAAAGTTTCTATAGGAAACACCGTAAACATGTGGTAGAAGGCCTCCACACAATCAAGCTGATTTTTTACTTGTCTTATATTCAAGATATCAAGAATGTGACAACTGACAAAACATTTCTGATATTATGATAAACAATTTTTCAGTTGGCAACTTTTTCATATCTCAGACAGGGACCGAGATAAATTGGCTCAAAGTTAAAAGTTGGAAAGTCCTTCTATTCAATGTTTCACGGTGTGTAGAATGATTCGAAACAAGAAGATCAATAGAAAAGA</canonical_amplicon>
		<polymorphic_amplicon>ATGAATTTCTTCCAAAGTTTCTATAGGAAACACCGTAAACATGTGGTAGAAGGCCTCCACACAATCAAGCTGATTTTTTACTTGTCTTATATTCAAGATATCAAGAATGTGACAACTGACAAAACATTTCTGATATTATGATAAACAATTTTTCAGTTGGCAACTTTTTCATATCTCAGACAGGGACCGAGATAAATTGRCTCAAAGTTAAAAGTTGGAAAGTCCTTCTATTCAATGTTTCACGGTGTGTAGAATGATTCGAAACAAGAAGATCAATAGAAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38402</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>90679</contig_pos>
        <strand>+</strand>
        <context>tttgatatct[G/T]tcacaggaac</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGATTGTAATATTAGCAACATTTTGTTAGTTGACTACTTTTTGATATCT</left_flank>
        <right_flank>TCACAGGAACCGAGATAAATGAACTCAAATAAGAAGGGGGCCAATTAGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCTCTTCATTAATAGTGTTCTTCCTGAGGTCAATGGGCCACCGAGGGTCGTGGGTTTTTACGTCACTTTTTTTGTGGATAATTTAAATTTTTTGAATTGTTTCTTGCCACGTGGATTTCTCTTATGATCAAATAGATACTTTCGTCATGTTCAAAAAACAATTGAATTATCACTTTCAAAATTTCCGATACTCCTGTAAAAAAGTGTGTCCCTTTAAGTCTAATTATCTCGTTTCCTATTTGAGATATCAAAAAATGTTTAACAAAGGAAATGTTGATTATCTTAAGGCAAACAATTTTGTTCTTGAAACCTTTTTGATATCTTCCACAGTAACCGAGATATACTTTGTCAAAGTTGAATAGACCCCACACTCTAACATTTTAAGTTTGAACTGATTTATCTTGATTCTTGTGAAAGATATAAAAAAAGTAGTCATCTGACAAAATGTTGATTGTAATATTAGCAACATTTTGTTAGTTGACTACTTTTTGATATCTTTCACAGGAACCGAGATAAATGAACTCAAATAAGAAGGGGGCCAATTAGCCTTCTGCTCACATTCGAAACATTCGCATAAAATTTTATTCTTCTCCATAAAAAAAAGAAGAAAACAAAAAATATCCTTTAAGAATCTAAATTTATTCCCATTGCGACTTCATCATTCCAAAATAGTTCTCTGCTCCTTCGGCTCCAACGGATTTCATCCCGACGTGACTCGAAATCCGGCTTTTCCGATTTTCCGACGTTCTCTGTACATATTGAACAATAACCCAAGGCACCACAAAACTGTATATACTGAAGATCTGAAAGTTTGAAAAGTAGTGATGTGGAACATTCTGGAAGGTTCCATACATAAGAAAGTGTGGCTATAGTTAAGCCCACTGGTCTCGGAAGACTATTATAGACCAGTCTCATTCCGAGGGAAGCAACTGAAAATAGTGCCATAATGGCTGCTTGGGTGCCAGTGGTACGGTAAAGGAATTCAGATGACTCAACGT</canonical>
            <polymorphic>TCTCTCTTCATTAATAGTGTTCTTCCTGAGGTCAATGGGCCACCGAGGGTCGTGGGTTTTTACGTCACTTTTTTTGTGGATAATTTAAATTTTTTGAATTGTTTCTTGCCACGTGGATTTCTCTTATGATCAAATAGATACTTTCGTCATGTTCAAAAAACAATTGAATTATCACTTTCAAAATTTCCGATACTCCTGTAAAAAAGTGTGTCCCTTTAAGTCTAATTATCTCGTTTCCTATTTGAGATATCAAAAAATGTTTAACAAAGGAAATGTTGATTATCTTAAGGCAAACAATTTTGTTCTTGAAACCTTTTTGATATCTTCCACAGTAACCGAGATATACTTTGTCAAAGTTGAATAGACCCCACACTCTAACATTTTAAGTTTGAACTGATTTATCTTGATTCTTGTGAAAGATATAAAAAAAGTAGTCATCTGACAAAATGTTGATTGTAATATTAGCAACATTTTGTTAGTTGACTACTTTTTGATATCTKTCACAGGAACCGAGATAAATGAACTCAAATAAGAAGGGGGCCAATTAGCCTTCTGCTCACATTCGAAACATTCGCATAAAATTTTATTCTTCTCCATAAAAAAAAGAAGAAAACAAAAAATATCCTTTAAGAATCTAAATTTATTCCCATTGCGACTTCATCATTCCAAAATAGTTCTCTGCTCCTTCGGCTCCAACGGATTTCATCCCGACGTGACTCGAAATCCGGCTTTTCCGATTTTCCGACGTTCTCTGTACATATTGAACAATAACCCAAGGCACCACAAAACTGTATATACTGAAGATCTGAAAGTTTGAAAAGTAGTGATGTGGAACATTCTGGAAGGTTCCATACATAAGAAAGTGTGGCTATAGTTAAGCCCACTGGTCTCGGAAGACTATTATAGACCAGTCTCATTCCGAGGGAAGCAACTGAAAATAGTGCCATAATGGCTGCTTGGGTGCCAGTGGTACGGTAAAGGAATTCAGATGACTCAACGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACGTGGATTTCTCTTATG</pcr_primer_p1>
		<pcr_primer_p2>GAATGTGAGCAGAAGGCTAA</pcr_primer_p2>
		<pcr_amplicon_size>456</pcr_amplicon_size>
		<canonical_amplicon>CCACGTGGATTTCTCTTATGATCAAATAGATACTTTCGTCATGTTCAAAAAACAATTGAATTATCACTTTCAAAATTTCCGATACTCCTGTAAAAAAGTGTGTCCCTTTAAGTCTAATTATCTCGTTTCCTATTTGAGATATCAAAAAATGTTTAACAAAGGAAATGTTGATTATCTTAAGGCAAACAATTTTGTTCTTGAAACCTTTTTGATATCTTCCACAGTAACCGAGATATACTTTGTCAAAGTTGAATAGACCCCACACTCTAACATTTTAAGTTTGAACTGATTTATCTTGATTCTTGTGAAAGATATAAAAAAAGTAGTCATCTGACAAAATGTTGATTGTAATATTAGCAACATTTTGTTAGTTGACTACTTTTTGATATCTTTCACAGGAACCGAGATAAATGAACTCAAATAAGAAGGGGGCCAATTAGCCTTCTGCTCACATTC</canonical_amplicon>
		<polymorphic_amplicon>CCACGTGGATTTCTCTTATGATCAAATAGATACTTTCGTCATGTTCAAAAAACAATTGAATTATCACTTTCAAAATTTCCGATACTCCTGTAAAAAAGTGTGTCCCTTTAAGTCTAATTATCTCGTTTCCTATTTGAGATATCAAAAAATGTTTAACAAAGGAAATGTTGATTATCTTAAGGCAAACAATTTTGTTCTTGAAACCTTTTTGATATCTTCCACAGTAACCGAGATATACTTTGTCAAAGTTGAATAGACCCCACACTCTAACATTTTAAGTTTGAACTGATTTATCTTGATTCTTGTGAAAGATATAAAAAAAGTAGTCATCTGACAAAATGTTGATTGTAATATTAGCAACATTTTGTTAGTTGACTACTTTTTGATATCTKTCACAGGAACCGAGATAAATGAACTCAAATAAGAAGGGGGCCAATTAGCCTTCTGCTCACATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38403</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>90691</contig_pos>
        <strand>+</strand>
        <context>cacaggaacc[A/G]agataaatga</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAGCAACATTTTGTTAGTTGACTACTTTTTGATATCTTTCACAGGAACC</left_flank>
        <right_flank>AGATAAATGAACTCAAATAAGAAGGGGGCCAATTAGCCTTCTGCTCACAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAGTGTTCTTCCTGAGGTCAATGGGCCACCGAGGGTCGTGGGTTTTTACGTCACTTTTTTTGTGGATAATTTAAATTTTTTGAATTGTTTCTTGCCACGTGGATTTCTCTTATGATCAAATAGATACTTTCGTCATGTTCAAAAAACAATTGAATTATCACTTTCAAAATTTCCGATACTCCTGTAAAAAAGTGTGTCCCTTTAAGTCTAATTATCTCGTTTCCTATTTGAGATATCAAAAAATGTTTAACAAAGGAAATGTTGATTATCTTAAGGCAAACAATTTTGTTCTTGAAACCTTTTTGATATCTTCCACAGTAACCGAGATATACTTTGTCAAAGTTGAATAGACCCCACACTCTAACATTTTAAGTTTGAACTGATTTATCTTGATTCTTGTGAAAGATATAAAAAAAGTAGTCATCTGACAAAATGTTGATTGTAATATTAGCAACATTTTGTTAGTTGACTACTTTTTGATATCTTTCACAGGAACCGAGATAAATGAACTCAAATAAGAAGGGGGCCAATTAGCCTTCTGCTCACATTCGAAACATTCGCATAAAATTTTATTCTTCTCCATAAAAAAAAGAAGAAAACAAAAAATATCCTTTAAGAATCTAAATTTATTCCCATTGCGACTTCATCATTCCAAAATAGTTCTCTGCTCCTTCGGCTCCAACGGATTTCATCCCGACGTGACTCGAAATCCGGCTTTTCCGATTTTCCGACGTTCTCTGTACATATTGAACAATAACCCAAGGCACCACAAAACTGTATATACTGAAGATCTGAAAGTTTGAAAAGTAGTGATGTGGAACATTCTGGAAGGTTCCATACATAAGAAAGTGTGGCTATAGTTAAGCCCACTGGTCTCGGAAGACTATTATAGACCAGTCTCATTCCGAGGGAAGCAACTGAAAATAGTGCCATAATGGCTGCTTGGGTGCCAGTGGTACGGTAAAGGAATTCAGATGACTCAACGTCGATGGCAGCGG</canonical>
            <polymorphic>AATAGTGTTCTTCCTGAGGTCAATGGGCCACCGAGGGTCGTGGGTTTTTACGTCACTTTTTTTGTGGATAATTTAAATTTTTTGAATTGTTTCTTGCCACGTGGATTTCTCTTATGATCAAATAGATACTTTCGTCATGTTCAAAAAACAATTGAATTATCACTTTCAAAATTTCCGATACTCCTGTAAAAAAGTGTGTCCCTTTAAGTCTAATTATCTCGTTTCCTATTTGAGATATCAAAAAATGTTTAACAAAGGAAATGTTGATTATCTTAAGGCAAACAATTTTGTTCTTGAAACCTTTTTGATATCTTCCACAGTAACCGAGATATACTTTGTCAAAGTTGAATAGACCCCACACTCTAACATTTTAAGTTTGAACTGATTTATCTTGATTCTTGTGAAAGATATAAAAAAAGTAGTCATCTGACAAAATGTTGATTGTAATATTAGCAACATTTTGTTAGTTGACTACTTTTTGATATCTTTCACAGGAACCRAGATAAATGAACTCAAATAAGAAGGGGGCCAATTAGCCTTCTGCTCACATTCGAAACATTCGCATAAAATTTTATTCTTCTCCATAAAAAAAAGAAGAAAACAAAAAATATCCTTTAAGAATCTAAATTTATTCCCATTGCGACTTCATCATTCCAAAATAGTTCTCTGCTCCTTCGGCTCCAACGGATTTCATCCCGACGTGACTCGAAATCCGGCTTTTCCGATTTTCCGACGTTCTCTGTACATATTGAACAATAACCCAAGGCACCACAAAACTGTATATACTGAAGATCTGAAAGTTTGAAAAGTAGTGATGTGGAACATTCTGGAAGGTTCCATACATAAGAAAGTGTGGCTATAGTTAAGCCCACTGGTCTCGGAAGACTATTATAGACCAGTCTCATTCCGAGGGAAGCAACTGAAAATAGTGCCATAATGGCTGCTTGGGTGCCAGTGGTACGGTAAAGGAATTCAGATGACTCAACGTCGATGGCAGCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACGTGGATTTCTCTTATG</pcr_primer_p1>
		<pcr_primer_p2>GAATGTGAGCAGAAGGCTAA</pcr_primer_p2>
		<pcr_amplicon_size>456</pcr_amplicon_size>
		<canonical_amplicon>CCACGTGGATTTCTCTTATGATCAAATAGATACTTTCGTCATGTTCAAAAAACAATTGAATTATCACTTTCAAAATTTCCGATACTCCTGTAAAAAAGTGTGTCCCTTTAAGTCTAATTATCTCGTTTCCTATTTGAGATATCAAAAAATGTTTAACAAAGGAAATGTTGATTATCTTAAGGCAAACAATTTTGTTCTTGAAACCTTTTTGATATCTTCCACAGTAACCGAGATATACTTTGTCAAAGTTGAATAGACCCCACACTCTAACATTTTAAGTTTGAACTGATTTATCTTGATTCTTGTGAAAGATATAAAAAAAGTAGTCATCTGACAAAATGTTGATTGTAATATTAGCAACATTTTGTTAGTTGACTACTTTTTGATATCTTTCACAGGAACCGAGATAAATGAACTCAAATAAGAAGGGGGCCAATTAGCCTTCTGCTCACATTC</canonical_amplicon>
		<polymorphic_amplicon>CCACGTGGATTTCTCTTATGATCAAATAGATACTTTCGTCATGTTCAAAAAACAATTGAATTATCACTTTCAAAATTTCCGATACTCCTGTAAAAAAGTGTGTCCCTTTAAGTCTAATTATCTCGTTTCCTATTTGAGATATCAAAAAATGTTTAACAAAGGAAATGTTGATTATCTTAAGGCAAACAATTTTGTTCTTGAAACCTTTTTGATATCTTCCACAGTAACCGAGATATACTTTGTCAAAGTTGAATAGACCCCACACTCTAACATTTTAAGTTTGAACTGATTTATCTTGATTCTTGTGAAAGATATAAAAAAAGTAGTCATCTGACAAAATGTTGATTGTAATATTAGCAACATTTTGTTAGTTGACTACTTTTTGATATCTTTCACAGGAACCRAGATAAATGAACTCAAATAAGAAGGGGGCCAATTAGCCTTCTGCTCACATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38404</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>90759</contig_pos>
        <strand>+</strand>
        <context>ATTCGCATAA[A/C]ATTTTATTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAAGAAGGGGGCCAATTAGCCTTCTGCTCACATTCGAAACATTCGCATAA</left_flank>
        <right_flank>ATTTTATTCTTCTCCATAAAAAAAAGAAGAAAACAAAAAATATCCTTTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATTTAAATTTTTTGAATTGTTTCTTGCCACGTGGATTTCTCTTATGATCAAATAGATACTTTCGTCATGTTCAAAAAACAATTGAATTATCACTTTCAAAATTTCCGATACTCCTGTAAAAAAGTGTGTCCCTTTAAGTCTAATTATCTCGTTTCCTATTTGAGATATCAAAAAATGTTTAACAAAGGAAATGTTGATTATCTTAAGGCAAACAATTTTGTTCTTGAAACCTTTTTGATATCTTCCACAGTAACCGAGATATACTTTGTCAAAGTTGAATAGACCCCACACTCTAACATTTTAAGTTTGAACTGATTTATCTTGATTCTTGTGAAAGATATAAAAAAAGTAGTCATCTGACAAAATGTTGATTGTAATATTAGCAACATTTTGTTAGTTGACTACTTTTTGATATCTTTCACAGGAACCGAGATAAATGAACTCAAATAAGAAGGGGGCCAATTAGCCTTCTGCTCACATTCGAAACATTCGCATAAAATTTTATTCTTCTCCATAAAAAAAAGAAGAAAACAAAAAATATCCTTTAAGAATCTAAATTTATTCCCATTGCGACTTCATCATTCCAAAATAGTTCTCTGCTCCTTCGGCTCCAACGGATTTCATCCCGACGTGACTCGAAATCCGGCTTTTCCGATTTTCCGACGTTCTCTGTACATATTGAACAATAACCCAAGGCACCACAAAACTGTATATACTGAAGATCTGAAAGTTTGAAAAGTAGTGATGTGGAACATTCTGGAAGGTTCCATACATAAGAAAGTGTGGCTATAGTTAAGCCCACTGGTCTCGGAAGACTATTATAGACCAGTCTCATTCCGAGGGAAGCAACTGAAAATAGTGCCATAATGGCTGCTTGGGTGCCAGTGGTACGGTAAAGGAATTCAGATGACTCAACGTCGATGGCAGCGGAGAAATGTCGAACGATGTCGAAACGACTACTGGAGCTCAAATAGAAATGGTTAGGGAAAGTTATGGAA</canonical>
            <polymorphic>TAATTTAAATTTTTTGAATTGTTTCTTGCCACGTGGATTTCTCTTATGATCAAATAGATACTTTCGTCATGTTCAAAAAACAATTGAATTATCACTTTCAAAATTTCCGATACTCCTGTAAAAAAGTGTGTCCCTTTAAGTCTAATTATCTCGTTTCCTATTTGAGATATCAAAAAATGTTTAACAAAGGAAATGTTGATTATCTTAAGGCAAACAATTTTGTTCTTGAAACCTTTTTGATATCTTCCACAGTAACCGAGATATACTTTGTCAAAGTTGAATAGACCCCACACTCTAACATTTTAAGTTTGAACTGATTTATCTTGATTCTTGTGAAAGATATAAAAAAAGTAGTCATCTGACAAAATGTTGATTGTAATATTAGCAACATTTTGTTAGTTGACTACTTTTTGATATCTTTCACAGGAACCGAGATAAATGAACTCAAATAAGAAGGGGGCCAATTAGCCTTCTGCTCACATTCGAAACATTCGCATAAMATTTTATTCTTCTCCATAAAAAAAAGAAGAAAACAAAAAATATCCTTTAAGAATCTAAATTTATTCCCATTGCGACTTCATCATTCCAAAATAGTTCTCTGCTCCTTCGGCTCCAACGGATTTCATCCCGACGTGACTCGAAATCCGGCTTTTCCGATTTTCCGACGTTCTCTGTACATATTGAACAATAACCCAAGGCACCACAAAACTGTATATACTGAAGATCTGAAAGTTTGAAAAGTAGTGATGTGGAACATTCTGGAAGGTTCCATACATAAGAAAGTGTGGCTATAGTTAAGCCCACTGGTCTCGGAAGACTATTATAGACCAGTCTCATTCCGAGGGAAGCAACTGAAAATAGTGCCATAATGGCTGCTTGGGTGCCAGTGGTACGGTAAAGGAATTCAGATGACTCAACGTCGATGGCAGCGGAGAAATGTCGAACGATGTCGAAACGACTACTGGAGCTCAAATAGAAATGGTTAGGGAAAGTTATGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>398 344 99 94 58 7</canonical_bands>
                <polymorphic_bands>456 344 99 94 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>344 247 99 72 65 58 42 37 15 9 6 5 1</canonical_bands>
                <polymorphic_bands>344 247 99 95 72 65 42 15 9 6 5 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACGTGGATTTCTCTTATG</pcr_primer_p1>
		<pcr_primer_p2>AAGTCGCAATGGGAATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>550</pcr_amplicon_size>
		<canonical_amplicon>CCACGTGGATTTCTCTTATGATCAAATAGATACTTTCGTCATGTTCAAAAAACAATTGAATTATCACTTTCAAAATTTCCGATACTCCTGTAAAAAAGTGTGTCCCTTTAAGTCTAATTATCTCGTTTCCTATTTGAGATATCAAAAAATGTTTAACAAAGGAAATGTTGATTATCTTAAGGCAAACAATTTTGTTCTTGAAACCTTTTTGATATCTTCCACAGTAACCGAGATATACTTTGTCAAAGTTGAATAGACCCCACACTCTAACATTTTAAGTTTGAACTGATTTATCTTGATTCTTGTGAAAGATATAAAAAAAGTAGTCATCTGACAAAATGTTGATTGTAATATTAGCAACATTTTGTTAGTTGACTACTTTTTGATATCTTTCACAGGAACCGAGATAAATGAACTCAAATAAGAAGGGGGCCAATTAGCCTTCTGCTCACATTCGAAACATTCGCATAAAATTTTATTCTTCTCCATAAAAAAAAGAAGAAAACAAAAAATATCCTTTAAGAATCTAAATTTATTCCCATTGCGACTT</canonical_amplicon>
		<polymorphic_amplicon>CCACGTGGATTTCTCTTATGATCAAATAGATACTTTCGTCATGTTCAAAAAACAATTGAATTATCACTTTCAAAATTTCCGATACTCCTGTAAAAAAGTGTGTCCCTTTAAGTCTAATTATCTCGTTTCCTATTTGAGATATCAAAAAATGTTTAACAAAGGAAATGTTGATTATCTTAAGGCAAACAATTTTGTTCTTGAAACCTTTTTGATATCTTCCACAGTAACCGAGATATACTTTGTCAAAGTTGAATAGACCCCACACTCTAACATTTTAAGTTTGAACTGATTTATCTTGATTCTTGTGAAAGATATAAAAAAAGTAGTCATCTGACAAAATGTTGATTGTAATATTAGCAACATTTTGTTAGTTGACTACTTTTTGATATCTTTCACAGGAACCGAGATAAATGAACTCAAATAAGAAGGGGGCCAATTAGCCTTCTGCTCACATTCGAAACATTCGCATAAMATTTTATTCTTCTCCATAAAAAAAAGAAGAAAACAAAAAATATCCTTTAAGAATCTAAATTTATTCCCATTGCGACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38405</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>90773</contig_pos>
        <strand>+</strand>
        <context>TTATTCTTCT[C/T]CMTRAAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTAGCCTTCTGCTCACATTCGAAACATTCGCATAAAATTTTATTCTTCT</left_flank>
        <right_flank>CATAAAAAAAAGAAGAAAACAAAAAATATCCTTTAAGAATCTAAATTTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAATTGTTTCTTGCCACGTGGATTTCTCTTATGATCAAATAGATACTTTCGTCATGTTCAAAAAACAATTGAATTATCACTTTCAAAATTTCCGATACTCCTGTAAAAAAGTGTGTCCCTTTAAGTCTAATTATCTCGTTTCCTATTTGAGATATCAAAAAATGTTTAACAAAGGAAATGTTGATTATCTTAAGGCAAACAATTTTGTTCTTGAAACCTTTTTGATATCTTCCACAGTAACCGAGATATACTTTGTCAAAGTTGAATAGACCCCACACTCTAACATTTTAAGTTTGAACTGATTTATCTTGATTCTTGTGAAAGATATAAAAAAAGTAGTCATCTGACAAAATGTTGATTGTAATATTAGCAACATTTTGTTAGTTGACTACTTTTTGATATCTTTCACAGGAACCGAGATAAATGAACTCAAATAAGAAGGGGGCCAATTAGCCTTCTGCTCACATTCGAAACATTCGCATAAAATTTTATTCTTCTCCATAAAAAAAAGAAGAAAACAAAAAATATCCTTTAAGAATCTAAATTTATTCCCATTGCGACTTCATCATTCCAAAATAGTTCTCTGCTCCTTCGGCTCCAACGGATTTCATCCCGACGTGACTCGAAATCCGGCTTTTCCGATTTTCCGACGTTCTCTGTACATATTGAACAATAACCCAAGGCACCACAAAACTGTATATACTGAAGATCTGAAAGTTTGAAAAGTAGTGATGTGGAACATTCTGGAAGGTTCCATACATAAGAAAGTGTGGCTATAGTTAAGCCCACTGGTCTCGGAAGACTATTATAGACCAGTCTCATTCCGAGGGAAGCAACTGAAAATAGTGCCATAATGGCTGCTTGGGTGCCAGTGGTACGGTAAAGGAATTCAGATGACTCAACGTCGATGGCAGCGGAGAAATGTCGAACGATGTCGAAACGACTACTGGAGCTCAAATAGAAATGGTTAGGGAAAGTTATGGAAACTCAGGGAGTGTC</canonical>
            <polymorphic>TGAATTGTTTCTTGCCACGTGGATTTCTCTTATGATCAAATAGATACTTTCGTCATGTTCAAAAAACAATTGAATTATCACTTTCAAAATTTCCGATACTCCTGTAAAAAAGTGTGTCCCTTTAAGTCTAATTATCTCGTTTCCTATTTGAGATATCAAAAAATGTTTAACAAAGGAAATGTTGATTATCTTAAGGCAAACAATTTTGTTCTTGAAACCTTTTTGATATCTTCCACAGTAACCGAGATATACTTTGTCAAAGTTGAATAGACCCCACACTCTAACATTTTAAGTTTGAACTGATTTATCTTGATTCTTGTGAAAGATATAAAAAAAGTAGTCATCTGACAAAATGTTGATTGTAATATTAGCAACATTTTGTTAGTTGACTACTTTTTGATATCTTTCACAGGAACCGAGATAAATGAACTCAAATAAGAAGGGGGCCAATTAGCCTTCTGCTCACATTCGAAACATTCGCATAAAATTTTATTCTTCTYCATAAAAAAAAGAAGAAAACAAAAAATATCCTTTAAGAATCTAAATTTATTCCCATTGCGACTTCATCATTCCAAAATAGTTCTCTGCTCCTTCGGCTCCAACGGATTTCATCCCGACGTGACTCGAAATCCGGCTTTTCCGATTTTCCGACGTTCTCTGTACATATTGAACAATAACCCAAGGCACCACAAAACTGTATATACTGAAGATCTGAAAGTTTGAAAAGTAGTGATGTGGAACATTCTGGAAGGTTCCATACATAAGAAAGTGTGGCTATAGTTAAGCCCACTGGTCTCGGAAGACTATTATAGACCAGTCTCATTCCGAGGGAAGCAACTGAAAATAGTGCCATAATGGCTGCTTGGGTGCCAGTGGTACGGTAAAGGAATTCAGATGACTCAACGTCGATGGCAGCGGAGAAATGTCGAACGATGTCGAAACGACTACTGGAGCTCAAATAGAAATGGTTAGGGAAAGTTATGGAAACTCAGGGAGTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTAGCCTTCTGCTCACATT</pcr_primer_p1>
		<pcr_primer_p2>TGTTCAATATGTACAGAGAACGTC</pcr_primer_p2>
		<pcr_amplicon_size>225</pcr_amplicon_size>
		<canonical_amplicon>AATTAGCCTTCTGCTCACATTCGAAACATTCGCATAAAATTTTATTCTTCTCCATAAAAAAAAGAAGAAAACAAAAAATATCCTTTAAGAATCTAAATTTATTCCCATTGCGACTTCATCATTCCAAAATAGTTCTCTGCTCCTTCGGCTCCAACGGATTTCATCCCGACGTGACTCGAAATCCGGCTTTTCCGATTTTCCGACGTTCTCTGTACATATTGAACA</canonical_amplicon>
		<polymorphic_amplicon>AATTAGCCTTCTGCTCACATTCGAAACATTCGCATAAAATTTTATTCTTCTYCATAAAAAAAAGAAGAAAACAAAAAATATCCTTTAAGAATCTAAATTTATTCCCATTGCGACTTCATCATTCCAAAATAGTTCTCTGCTCCTTCGGCTCCAACGGATTTCATCCCGACGTGACTCGAAATCCGGCTTTTCCGATTTTCCGACGTTCTCTGTACATATTGAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38406</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>90775</contig_pos>
        <strand>+</strand>
        <context>ATTCTTCTYC[A/C]TRAAAAAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAGCCTTCTGCTCACATTCGAAACATTCGCATAAAATTTTATTCTTCTCC</left_flank>
        <right_flank>TAAAAAAAAGAAGAAAACAAAAAATATCCTTTAAGAATCTAAATTTATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGTTTCTTGCCACGTGGATTTCTCTTATGATCAAATAGATACTTTCGTCATGTTCAAAAAACAATTGAATTATCACTTTCAAAATTTCCGATACTCCTGTAAAAAAGTGTGTCCCTTTAAGTCTAATTATCTCGTTTCCTATTTGAGATATCAAAAAATGTTTAACAAAGGAAATGTTGATTATCTTAAGGCAAACAATTTTGTTCTTGAAACCTTTTTGATATCTTCCACAGTAACCGAGATATACTTTGTCAAAGTTGAATAGACCCCACACTCTAACATTTTAAGTTTGAACTGATTTATCTTGATTCTTGTGAAAGATATAAAAAAAGTAGTCATCTGACAAAATGTTGATTGTAATATTAGCAACATTTTGTTAGTTGACTACTTTTTGATATCTTTCACAGGAACCGAGATAAATGAACTCAAATAAGAAGGGGGCCAATTAGCCTTCTGCTCACATTCGAAACATTCGCATAAAATTTTATTCTTCTCCATAAAAAAAAGAAGAAAACAAAAAATATCCTTTAAGAATCTAAATTTATTCCCATTGCGACTTCATCATTCCAAAATAGTTCTCTGCTCCTTCGGCTCCAACGGATTTCATCCCGACGTGACTCGAAATCCGGCTTTTCCGATTTTCCGACGTTCTCTGTACATATTGAACAATAACCCAAGGCACCACAAAACTGTATATACTGAAGATCTGAAAGTTTGAAAAGTAGTGATGTGGAACATTCTGGAAGGTTCCATACATAAGAAAGTGTGGCTATAGTTAAGCCCACTGGTCTCGGAAGACTATTATAGACCAGTCTCATTCCGAGGGAAGCAACTGAAAATAGTGCCATAATGGCTGCTTGGGTGCCAGTGGTACGGTAAAGGAATTCAGATGACTCAACGTCGATGGCAGCGGAGAAATGTCGAACGATGTCGAAACGACTACTGGAGCTCAAATAGAAATGGTTAGGGAAAGTTATGGAAACTCAGGGAGTGTCCG</canonical>
            <polymorphic>AATTGTTTCTTGCCACGTGGATTTCTCTTATGATCAAATAGATACTTTCGTCATGTTCAAAAAACAATTGAATTATCACTTTCAAAATTTCCGATACTCCTGTAAAAAAGTGTGTCCCTTTAAGTCTAATTATCTCGTTTCCTATTTGAGATATCAAAAAATGTTTAACAAAGGAAATGTTGATTATCTTAAGGCAAACAATTTTGTTCTTGAAACCTTTTTGATATCTTCCACAGTAACCGAGATATACTTTGTCAAAGTTGAATAGACCCCACACTCTAACATTTTAAGTTTGAACTGATTTATCTTGATTCTTGTGAAAGATATAAAAAAAGTAGTCATCTGACAAAATGTTGATTGTAATATTAGCAACATTTTGTTAGTTGACTACTTTTTGATATCTTTCACAGGAACCGAGATAAATGAACTCAAATAAGAAGGGGGCCAATTAGCCTTCTGCTCACATTCGAAACATTCGCATAAAATTTTATTCTTCTCCMTAAAAAAAAGAAGAAAACAAAAAATATCCTTTAAGAATCTAAATTTATTCCCATTGCGACTTCATCATTCCAAAATAGTTCTCTGCTCCTTCGGCTCCAACGGATTTCATCCCGACGTGACTCGAAATCCGGCTTTTCCGATTTTCCGACGTTCTCTGTACATATTGAACAATAACCCAAGGCACCACAAAACTGTATATACTGAAGATCTGAAAGTTTGAAAAGTAGTGATGTGGAACATTCTGGAAGGTTCCATACATAAGAAAGTGTGGCTATAGTTAAGCCCACTGGTCTCGGAAGACTATTATAGACCAGTCTCATTCCGAGGGAAGCAACTGAAAATAGTGCCATAATGGCTGCTTGGGTGCCAGTGGTACGGTAAAGGAATTCAGATGACTCAACGTCGATGGCAGCGGAGAAATGTCGAACGATGTCGAAACGACTACTGGAGCTCAAATAGAAATGGTTAGGGAAAGTTATGGAAACTCAGGGAGTGTCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTAGCCTTCTGCTCACATT</pcr_primer_p1>
		<pcr_primer_p2>TGTTCAATATGTACAGAGAACGTC</pcr_primer_p2>
		<pcr_amplicon_size>225</pcr_amplicon_size>
		<canonical_amplicon>AATTAGCCTTCTGCTCACATTCGAAACATTCGCATAAAATTTTATTCTTCTCCATAAAAAAAAGAAGAAAACAAAAAATATCCTTTAAGAATCTAAATTTATTCCCATTGCGACTTCATCATTCCAAAATAGTTCTCTGCTCCTTCGGCTCCAACGGATTTCATCCCGACGTGACTCGAAATCCGGCTTTTCCGATTTTCCGACGTTCTCTGTACATATTGAACA</canonical_amplicon>
		<polymorphic_amplicon>AATTAGCCTTCTGCTCACATTCGAAACATTCGCATAAAATTTTATTCTTCTCCMTAAAAAAAAGAAGAAAACAAAAAATATCCTTTAAGAATCTAAATTTATTCCCATTGCGACTTCATCATTCCAAAATAGTTCTCTGCTCCTTCGGCTCCAACGGATTTCATCCCGACGTGACTCGAAATCCGGCTTTTCCGATTTTCCGACGTTCTCTGTACATATTGAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38407</snp_id>
        <super_contig>c013000996.Contig1</super_contig>
        <contig_pos>90777</contig_pos>
        <strand>+</strand>
        <context>TCTTCTYCMT[A/G]AAAAAAAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCTTCTGCTCACATTCGAAACATTCGCATAAAATTTTATTCTTCTCCAT</left_flank>
        <right_flank>AAAAAAAGAAGAAAACAAAAAATATCCTTTAAGAATCTAAATTTATTCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTTCTTGCCACGTGGATTTCTCTTATGATCAAATAGATACTTTCGTCATGTTCAAAAAACAATTGAATTATCACTTTCAAAATTTCCGATACTCCTGTAAAAAAGTGTGTCCCTTTAAGTCTAATTATCTCGTTTCCTATTTGAGATATCAAAAAATGTTTAACAAAGGAAATGTTGATTATCTTAAGGCAAACAATTTTGTTCTTGAAACCTTTTTGATATCTTCCACAGTAACCGAGATATACTTTGTCAAAGTTGAATAGACCCCACACTCTAACATTTTAAGTTTGAACTGATTTATCTTGATTCTTGTGAAAGATATAAAAAAAGTAGTCATCTGACAAAATGTTGATTGTAATATTAGCAACATTTTGTTAGTTGACTACTTTTTGATATCTTTCACAGGAACCGAGATAAATGAACTCAAATAAGAAGGGGGCCAATTAGCCTTCTGCTCACATTCGAAACATTCGCATAAAATTTTATTCTTCTCCATAAAAAAAAGAAGAAAACAAAAAATATCCTTTAAGAATCTAAATTTATTCCCATTGCGACTTCATCATTCCAAAATAGTTCTCTGCTCCTTCGGCTCCAACGGATTTCATCCCGACGTGACTCGAAATCCGGCTTTTCCGATTTTCCGACGTTCTCTGTACATATTGAACAATAACCCAAGGCACCACAAAACTGTATATACTGAAGATCTGAAAGTTTGAAAAGTAGTGATGTGGAACATTCTGGAAGGTTCCATACATAAGAAAGTGTGGCTATAGTTAAGCCCACTGGTCTCGGAAGACTATTATAGACCAGTCTCATTCCGAGGGAAGCAACTGAAAATAGTGCCATAATGGCTGCTTGGGTGCCAGTGGTACGGTAAAGGAATTCAGATGACTCAACGTCGATGGCAGCGGAGAAATGTCGAACGATGTCGAAACGACTACTGGAGCTCAAATAGAAATGGTTAGGGAAAGTTATGGAAACTCAGGGAGTGTCCGTC</canonical>
            <polymorphic>TTGTTTCTTGCCACGTGGATTTCTCTTATGATCAAATAGATACTTTCGTCATGTTCAAAAAACAATTGAATTATCACTTTCAAAATTTCCGATACTCCTGTAAAAAAGTGTGTCCCTTTAAGTCTAATTATCTCGTTTCCTATTTGAGATATCAAAAAATGTTTAACAAAGGAAATGTTGATTATCTTAAGGCAAACAATTTTGTTCTTGAAACCTTTTTGATATCTTCCACAGTAACCGAGATATACTTTGTCAAAGTTGAATAGACCCCACACTCTAACATTTTAAGTTTGAACTGATTTATCTTGATTCTTGTGAAAGATATAAAAAAAGTAGTCATCTGACAAAATGTTGATTGTAATATTAGCAACATTTTGTTAGTTGACTACTTTTTGATATCTTTCACAGGAACCGAGATAAATGAACTCAAATAAGAAGGGGGCCAATTAGCCTTCTGCTCACATTCGAAACATTCGCATAAAATTTTATTCTTCTCCATRAAAAAAAGAAGAAAACAAAAAATATCCTTTAAGAATCTAAATTTATTCCCATTGCGACTTCATCATTCCAAAATAGTTCTCTGCTCCTTCGGCTCCAACGGATTTCATCCCGACGTGACTCGAAATCCGGCTTTTCCGATTTTCCGACGTTCTCTGTACATATTGAACAATAACCCAAGGCACCACAAAACTGTATATACTGAAGATCTGAAAGTTTGAAAAGTAGTGATGTGGAACATTCTGGAAGGTTCCATACATAAGAAAGTGTGGCTATAGTTAAGCCCACTGGTCTCGGAAGACTATTATAGACCAGTCTCATTCCGAGGGAAGCAACTGAAAATAGTGCCATAATGGCTGCTTGGGTGCCAGTGGTACGGTAAAGGAATTCAGATGACTCAACGTCGATGGCAGCGGAGAAATGTCGAACGATGTCGAAACGACTACTGGAGCTCAAATAGAAATGGTTAGGGAAAGTTATGGAAACTCAGGGAGTGTCCGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTAGCCTTCTGCTCACATT</pcr_primer_p1>
		<pcr_primer_p2>TGTTCAATATGTACAGAGAACGTC</pcr_primer_p2>
		<pcr_amplicon_size>225</pcr_amplicon_size>
		<canonical_amplicon>AATTAGCCTTCTGCTCACATTCGAAACATTCGCATAAAATTTTATTCTTCTCCATAAAAAAAAGAAGAAAACAAAAAATATCCTTTAAGAATCTAAATTTATTCCCATTGCGACTTCATCATTCCAAAATAGTTCTCTGCTCCTTCGGCTCCAACGGATTTCATCCCGACGTGACTCGAAATCCGGCTTTTCCGATTTTCCGACGTTCTCTGTACATATTGAACA</canonical_amplicon>
		<polymorphic_amplicon>AATTAGCCTTCTGCTCACATTCGAAACATTCGCATAAAATTTTATTCTTCTCCATRAAAAAAAGAAGAAAACAAAAAATATCCTTTAAGAATCTAAATTTATTCCCATTGCGACTTCATCATTCCAAAATAGTTCTCTGCTCCTTCGGCTCCAACGGATTTCATCCCGACGTGACTCGAAATCCGGCTTTTCCGATTTTCCGACGTTCTCTGTACATATTGAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38408</snp_id>
        <super_contig>c013101329.Contig1</super_contig>
        <contig_pos>78228</contig_pos>
        <strand>+</strand>
        <context>AATGGAAATG[A/T]AAAAAAAAWG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCGGAAGCAACTGGACGGTTTCAGGCGATCGCGACTGCAATGGAAATG</left_flank>
        <right_flank>AAAAAAAATGGACAAAGCAGAAGGCAATACTATGATGGGGAAAACCGGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATCAACAATAATAACATTTAGGTAAAAAAGAAAACTAATCGACCAGAGAATTCCACCATTTTTCTATATCTTTTGTAGTTTCACTCGGCATCAGTGGTCTCGGGCTTCCCTGTGTCGATGGTACCGGTAAAGAGGGAGTTATCACCTGGAATAATGTACTTCAGAAGTCATTAGACAAGAAAAACAAACCAGTGGCGAATGATCTCCCATAAATTCGTCAGATAAGTTTTTGGGTGAGAATGGAGAATCTTCTCCACGTTCTTCCACATCCGGAAGATCATAAACGTTCAATTGTAGCTGAAATTTTGGGATTGGAAAGCTGGAAACCTAGATTACTTTCAACATGAAAAAGCTAAGGCTTCATGAAAAAAAAAATAAATGGCGACACGAACTCACATGAAAATTCTTGGGCTGTCCGGAACCCTTTCGGATTTCCGAACTAGCTCGTTTCGGAAGCAACTGGACGGTTTCAGGCGATCGCGACTGCAATGGAAATGAAAAAAAAATGGACAAAGCAGAAGGCAATACTATGATGGGGAAAACCGGAGGGGTGAAAAATTAAAAGACGAAACAAAACTCTGACTTTACAGAGACAATGAATGGACGTGGAATTGGCTCACTACAAACTACAAACTTCTTTTTCAGGTCTTACACTCACCTTTACTTGCTTTTTCTCACTTGAGCTTCCGACCATGAACTTTCGAGCAGCCTCTTGGAATAGGCCTGTTCTCTGAAAACAATTGTCACATTTTAATCGTTCAACTCAAGCCAACTAACCGAAAGAACATCCGGAATACTACCCCTCCGATTCTTAACAGCAGCCTTCTTCCTAATCGGTGGAGGCGTGTCTTCTTCACTACTCTCCGTCTCTTCTGTATCGACACTGTTTCTTCCATTACTCTCAAATCGAAGTCTTTGCTGCACAGTTTCTTCGTGAGAAATCGACGAGTGTCCAGACGAATGGACAACCGGATGGCCTCCAGTTCCAGATGGAATCA</canonical>
            <polymorphic>AGATCAACAATAATAACATTTAGGTAAAAAAGAAAACTAATCGACCAGAGAATTCCACCATTTTTCTATATCTTTTGTAGTTTCACTCGGCATCAGTGGTCTCGGGCTTCCCTGTGTCGATGGTACCGGTAAAGAGGGAGTTATCACCTGGAATAATGTACTTCAGAAGTCATTAGACAAGAAAAACAAACCAGTGGCGAATGATCTCCCATAAATTCGTCAGATAAGTTTTTGGGTGAGAATGGAGAATCTTCTCCACGTTCTTCCACATCCGGAAGATCATAAACGTTCAATTGTAGCTGAAATTTTGGGATTGGAAAGCTGGAAACCTAGATTACTTTCAACATGAAAAAGCTAAGGCTTCATGAAAAAAAAAATAAATGGCGACACGAACTCACATGAAAATTCTTGGGCTGTCCGGAACCCTTTCGGATTTCCGAACTAGCTCGTTTCGGAAGCAACTGGACGGTTTCAGGCGATCGCGACTGCAATGGAAATGWAAAAAAAATGGACAAAGCAGAAGGCAATACTATGATGGGGAAAACCGGAGGGGTGAAAAATTAAAAGACGAAACAAAACTCTGACTTTACAGAGACAATGAATGGACGTGGAATTGGCTCACTACAAACTACAAACTTCTTTTTCAGGTCTTACACTCACCTTTACTTGCTTTTTCTCACTTGAGCTTCCGACCATGAACTTTCGAGCAGCCTCTTGGAATAGGCCTGTTCTCTGAAAACAATTGTCACATTTTAATCGTTCAACTCAAGCCAACTAACCGAAAGAACATCCGGAATACTACCCCTCCGATTCTTAACAGCAGCCTTCTTCCTAATCGGTGGAGGCGTGTCTTCTTCACTACTCTCCGTCTCTTCTGTATCGACACTGTTTCTTCCATTACTCTCAAATCGAAGTCTTTGCTGCACAGTTTCTTCGTGAGAAATCGACGAGTGTCCAGACGAATGGACAACCGGATGGCCTCCAGTTCCAGATGGAATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTCAACATGAAAAAGCTAAG</pcr_primer_p1>
		<pcr_primer_p2>TCAGAGTTTTGTTTCGTCTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACTTTCAACATGAAAAAGCTAAGGCTTCATGAAAAAAAAAATAAATGGCGACACGAACTCACATGAAAATTCTTGGGCTGTCCGGAACCCTTTCGGATTTCCGAACTAGCTCGTTTCGGAAGCAACTGGACGGTTTCAGGCGATCGCGACTGCAATGGAAATGAAAAAAAAATGGACAAAGCAGAAGGCAATACTATGATGGGGAAAACCGGAGGGGTGAAAAATTAAAAGACGAAACAAAACTCTGA</canonical_amplicon>
		<polymorphic_amplicon>ACTTTCAACATGAAAAAGCTAAGGCTTCATGAAAAAAAAAATAAATGGCGACACGAACTCACATGAAAATTCTTGGGCTGTCCGGAACCCTTTCGGATTTCCGAACTAGCTCGTTTCGGAAGCAACTGGACGGTTTCAGGCGATCGCGACTGCAATGGAAATGWAAAAAAAATGGACAAAGCAGAAGGCAATACTATGATGGGGAAAACCGGAGGGGTGAAAAATTAAAAGACGAAACAAAACTCTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38409</snp_id>
        <super_contig>c013101329.Contig1</super_contig>
        <contig_pos>124292</contig_pos>
        <strand>+</strand>
        <context>TTCAGTTGGA[A/T]GGAGAGACTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGTTTTATAAGTTTTTGAAACTCTTCCAAAATTTGAAATTTCAGTTGGA</left_flank>
        <right_flank>GGAGAGACTGATGCCACAAAATTGAGCAAAGAATTCAATGGAAGAATGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTGCACCTCCTGCAGAGAATAAAATAATTGGAGAAGGATTTGCACAGGCAGGGAAAAGAGAAGAACCGGTCAAGAATAGAGCGGTTGTGTTGAGTAAAGTGGACAAACCAATTGGAACACATTATTATCTCTGGAATCTTGACTCAAAGACGTAATCGATATCTAGTTCCTTGCGGAATGTTTGAATTTGAAATTTCAGCGAAGGACTTTTCGTGTCAAATGCTCATTCTCTGGAACCTGGACACTTTTTCACAGGGATATTCAAAAAGAAGCCAGATGGAAAGTGCACCTGTTTGAAATATGAAAAACCACTCGAGCCAGCACCGTTTACTGGTGGAATCAGACCAAATGGAAAAATATACTTTACTGTCAAAATCGATAAATATGAACCAGCAAAAGGAAATATGAAATACGCACATGCGATGGCTAAGTATATCGGAGAAGTTGTGAGTTTTATAAGTTTTTGAAACTCTTCCAAAATTTGAAATTTCAGTTGGAAGGAGAGACTGATGCCACAAAATTGAGCAAAGAATTCAATGGAAGAATGGTGAACATTCAACGCCGTGGAATCGAACAAAAGGATTTTGTTTGGGTTATCACTGAGATTCTGGATAATTGAAGAACCACTTGAACGTTTTGAGAAAAATCAACTTTAAAACATTATAACAATTCCGGATAATTATTTAAGTTTTTTTTTTGACTCATTGTCAGGGATTTCTTTGCCATGGGGTTAACATGAAAAAACTAGGTTTTCCAAAATGTCACCCATTGGGGCCAAATTTTGTTTGTCCACATCGAAAAAATTCCCTGATAGTGAGTTATTTATTTAGAAGTGAATAACATGAAACATTTAAAGATTTTTTTTTACAAATAAAGTTATCGGAAAAATACTTTTTTGAAACGCCAGCATGCTTCGATTAGTTCCTCCCACTCGTCATAATCGGCCTATTCTGAACTCTTCATACCACAAACTGATACCAGAAATTTCATTTCAATCGT</canonical>
            <polymorphic>GCTGCACCTCCTGCAGAGAATAAAATAATTGGAGAAGGATTTGCACAGGCAGGGAAAAGAGAAGAACCGGTCAAGAATAGAGCGGTTGTGTTGAGTAAAGTGGACAAACCAATTGGAACACATTATTATCTCTGGAATCTTGACTCAAAGACGTAATCGATATCTAGTTCCTTGCGGAATGTTTGAATTTGAAATTTCAGCGAAGGACTTTTCGTGTCAAATGCTCATTCTCTGGAACCTGGACACTTTTTCACAGGGATATTCAAAAAGAAGCCAGATGGAAAGTGCACCTGTTTGAAATATGAAAAACCACTCGAGCCAGCACCGTTTACTGGTGGAATCAGACCAAATGGAAAAATATACTTTACTGTCAAAATCGATAAATATGAACCAGCAAAAGGAAATATGAAATACGCACATGCGATGGCTAAGTATATCGGAGAAGTTGTGAGTTTTATAAGTTTTTGAAACTCTTCCAAAATTTGAAATTTCAGTTGGAWGGAGAGACTGATGCCACAAAATTGAGCAAAGAATTCAATGGAAGAATGGTGAACATTCAACGCCGTGGAATCGAACAAAAGGATTTTGTTTGGGTTATCACTGAGATTCTGGATAATTGAAGAACCACTTGAACGTTTTGAGAAAAATCAACTTTAAAACATTATAACAATTCCGGATAATTATTTAAGTTTTTTTTTTGACTCATTGTCAGGGATTTCTTTGCCATGGGGTTAACATGAAAAAACTAGGTTTTCCAAAATGTCACCCATTGGGGCCAAATTTTGTTTGTCCACATCGAAAAAATTCCCTGATAGTGAGTTATTTATTTAGAAGTGAATAACATGAAACATTTAAAGATTTTTTTTTACAAATAAAGTTATCGGAAAAATACTTTTTTGAAACGCCAGCATGCTTCGATTAGTTCCTCCCACTCGTCATAATCGGCCTATTCTGAACTCTTCATACCACAAACTGATACCAGAAATTTCATTTCAATCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATCGATAAATATGAACCAG</pcr_primer_p1>
		<pcr_primer_p2>TTCAATTATCCAGAATCTCAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAATCGATAAATATGAACCAGCAAAAGGAAATATGAAATACGCACATGCGATGGCTAAGTATATCGGAGAAGTTGTGAGTTTTATAAGTTTTTGAAACTCTTCCAAAATTTGAAATTTCAGTTGGAAGGAGAGACTGATGCCACAAAATTGAGCAAAGAATTCAATGGAAGAATGGTGAACATTCAACGCCGTGGAATCGAACAAAAGGATTTTGTTTGGGTTATCACTGAGATTCTGGATAATTGAA</canonical_amplicon>
		<polymorphic_amplicon>CAAAATCGATAAATATGAACCAGCAAAAGGAAATATGAAATACGCACATGCGATGGCTAAGTATATCGGAGAAGTTGTGAGTTTTATAAGTTTTTGAAACTCTTCCAAAATTTGAAATTTCAGTTGGAWGGAGAGACTGATGCCACAAAATTGAGCAAAGAATTCAATGGAAGAATGGTGAACATTCAACGCCGTGGAATCGAACAAAAGGATTTTGTTTGGGTTATCACTGAGATTCTGGATAATTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38410</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>7595</contig_pos>
        <strand>+</strand>
        <context>TAAGTTTGCC[A/T]AAGTTTTTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCTGAATTATTACAAGTCATAAATGAATTGGTCAGAATATAAGTTTGCC</left_flank>
        <right_flank>AAGTTTTTTGTACCGACTGAATCAATAGATACTCACTTTATATTGATCTT</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATAGTTTCCAATAATCATAATTTCAGAGCACTTCTCCTTCATCTGAAAATGCGAGAAACACAGCCAACCACTTCCATCCGCCGCTACGAATCCAAAAAGGACTACGACGAAGAAGACGAGGAACTTGTGTACTGGTACTACGAAGACTGAACTCACGAAAATTGGCCACTGATCTCCAAATGTAATTTCGTAATTTCAATTTATTCATTTCATTTGAAAACAAAAATAAACTTGTAATTCATCACAAAGAAAGTTTTTCGAACTATATTGGTATGTGTAAATAAACCATATGATGCCGAGGAGGGCGTAAAGCGTTTTTTGTAGTACATTATAGCCAAGTGTAGATGAGGAAGTGTGTATTCGTAGAATTAGTCTTAAAGTCGTGTGACGTGCGATGCATTACGATTGATCAGTGAACCGATCGATTTGGACCAACTTTTTCTGCCGTCCTGAATTATTACAAGTCATAAATGAATTGGTCAGAATATAAGTTTGCCAAAGTTTTTTGTACCGACTGAATCAATAGATACTCACTTTATATTGATCTTCCGAGTGGTGTCTGTTGTTGGATGGCGGTCTCGGCGACATGCGATCTAAACCAAAACAGTAAGTACATGCTGCCCTCTATTTGCACTTACAAAGTGGGGAATAGGAATTATATTCATTCTCAACCATATCGTCTCCAATGTTCAGTTGGATGACATACTTGGATGATGGCTGCTCGTTATAGATACTTTTGCGGGATGGTTGAGGACTATTGACCTGGAAGTTCAGTGACAAATGGAGAGAACGATCTATTGCAAAATCAGTGATACTTTGGATTAATATAATGTACTTGAGTTGACTAAAAAAATGTATTTTTGTCGAAAAAAATAGGGAAACTTACTGGAAAGAAGTCAATAACTTTCGCGCGCTGTTTGACATTTGGTCGTTTGATTGGAGCAGTGGCCGCTCCATTTAGGTGCAGTTGTTCATCACATGGGACGAGTGAAAGACCT</canonical>
            <polymorphic>ATATAGTTTCCAATAATCATAATTTCAGAGCACTTCTCCTTCATCTGAAAATGCGAGAAACACAGCCAACCACTTCCATCCGCCGCTACGAATCCAAAAAGGACTACGACGAAGAAGACGAGGAACTTGTGTACTGGTACTACGAAGACTGAACTCACGAAAATTGGCCACTGATCTCCAAATGTAATTTCGTAATTTCAATTTATTCATTTCATTTGAAAACAAAAATAAACTTGTAATTCATCACAAAGAAAGTTTTTCGAACTATATTGGTATGTGTAAATAAACCATATGATGCCGAGGAGGGCGTAAAGCGTTTTTTGTAGTACATTATAGCCAAGTGTAGATGAGGAAGTGTGTATTCGTAGAATTAGTCTTAAAGTCGTGTGACGTGCGATGCATTACGATTGATCAGTGAACCGATCGATTTGGACCAACTTTTTCTGCCGTCCTGAATTATTACAAGTCATAAATGAATTGGTCAGAATATAAGTTTGCCWAAGTTTTTTGTACCGACTGAATCAATAGATACTCACTTTATATTGATCTTCCGAGTGGTGTCTGTTGTTGGATGGCGGTCTCGGCGACATGCGATCTAAACCAAAACAGTAAGTACATGCTGCCCTCTATTTGCACTTACAAAGTGGGGAATAGGAATTATATTCATTCTCAACCATATCGTCTCCAATGTTCAGTTGGATGACATACTTGGATGATGGCTGCTCGTTATAGATACTTTTGCGGGATGGTTGAGGACTATTGACCTGGAAGTTCAGTGACAAATGGAGAGAACGATCTATTGCAAAATCAGTGATACTTTGGATTAATATAATGTACTTGAGTTGACTAAAAAAATGTATTTTTGTCGAAAAAAATAGGGAAACTTACTGGAAAGAAGTCAATAACTTTCGCGCGCTGTTTGACATTTGGTCGTTTGATTGGAGCAGTGGCCGCTCCATTTAGGTGCAGTTGTTCATCACATGGGACGAGTGAAAGACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAATTAGTCTTAAAGTCGTGTGA</pcr_primer_p1>
		<pcr_primer_p2>GCATGTACTTACTGTTTTGGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AGAATTAGTCTTAAAGTCGTGTGACGTGCGATGCATTACGATTGATCAGTGAACCGATCGATTTGGACCAACTTTTTCTGCCGTCCTGAATTATTACAAGTCATAAATGAATTGGTCAGAATATAAGTTTGCCAAAGTTTTTTGTACCGACTGAATCAATAGATACTCACTTTATATTGATCTTCCGAGTGGTGTCTGTTGTTGGATGGCGGTCTCGGCGACATGCGATCTAAACCAAAACAGTAAGTACATGC</canonical_amplicon>
		<polymorphic_amplicon>AGAATTAGTCTTAAAGTCGTGTGACGTGCGATGCATTACGATTGATCAGTGAACCGATCGATTTGGACCAACTTTTTCTGCCGTCCTGAATTATTACAAGTCATAAATGAATTGGTCAGAATATAAGTTTGCCWAAGTTTTTTGTACCGACTGAATCAATAGATACTCACTTTATATTGATCTTCCGAGTGGTGTCTGTTGTTGGATGGCGGTCTCGGCGACATGCGATCTAAACCAAAACAGTAAGTACATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38411</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>7651</contig_pos>
        <strand>+</strand>
        <context>ATCTTCCGAG[C/T]GGTGTCTGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGTACCGACTGAATCAATAGATACTCACTTTATATTGATCTTCCGAG</left_flank>
        <right_flank>GGTGTCTGTTGTTGGATGGCGGTCTCGGCGACATGCGATCTAAACCAAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAACACAGCCAACCACTTCCATCCGCCGCTACGAATCCAAAAAGGACTACGACGAAGAAGACGAGGAACTTGTGTACTGGTACTACGAAGACTGAACTCACGAAAATTGGCCACTGATCTCCAAATGTAATTTCGTAATTTCAATTTATTCATTTCATTTGAAAACAAAAATAAACTTGTAATTCATCACAAAGAAAGTTTTTCGAACTATATTGGTATGTGTAAATAAACCATATGATGCCGAGGAGGGCGTAAAGCGTTTTTTGTAGTACATTATAGCCAAGTGTAGATGAGGAAGTGTGTATTCGTAGAATTAGTCTTAAAGTCGTGTGACGTGCGATGCATTACGATTGATCAGTGAACCGATCGATTTGGACCAACTTTTTCTGCCGTCCTGAATTATTACAAGTCATAAATGAATTGGTCAGAATATAAGTTTGCCAAAGTTTTTTGTACCGACTGAATCAATAGATACTCACTTTATATTGATCTTCCGAGTGGTGTCTGTTGTTGGATGGCGGTCTCGGCGACATGCGATCTAAACCAAAACAGTAAGTACATGCTGCCCTCTATTTGCACTTACAAAGTGGGGAATAGGAATTATATTCATTCTCAACCATATCGTCTCCAATGTTCAGTTGGATGACATACTTGGATGATGGCTGCTCGTTATAGATACTTTTGCGGGATGGTTGAGGACTATTGACCTGGAAGTTCAGTGACAAATGGAGAGAACGATCTATTGCAAAATCAGTGATACTTTGGATTAATATAATGTACTTGAGTTGACTAAAAAAATGTATTTTTGTCGAAAAAAATAGGGAAACTTACTGGAAAGAAGTCAATAACTTTCGCGCGCTGTTTGACATTTGGTCGTTTGATTGGAGCAGTGGCCGCTCCATTTAGGTGCAGTTGTTCATCACATGGGACGAGTGAAAGACCTCCGAATGCTTTGGAGATGGAACCTGAATTAGTTTTGAGTTAATAAGATTTTAGAAA</canonical>
            <polymorphic>GAAACACAGCCAACCACTTCCATCCGCCGCTACGAATCCAAAAAGGACTACGACGAAGAAGACGAGGAACTTGTGTACTGGTACTACGAAGACTGAACTCACGAAAATTGGCCACTGATCTCCAAATGTAATTTCGTAATTTCAATTTATTCATTTCATTTGAAAACAAAAATAAACTTGTAATTCATCACAAAGAAAGTTTTTCGAACTATATTGGTATGTGTAAATAAACCATATGATGCCGAGGAGGGCGTAAAGCGTTTTTTGTAGTACATTATAGCCAAGTGTAGATGAGGAAGTGTGTATTCGTAGAATTAGTCTTAAAGTCGTGTGACGTGCGATGCATTACGATTGATCAGTGAACCGATCGATTTGGACCAACTTTTTCTGCCGTCCTGAATTATTACAAGTCATAAATGAATTGGTCAGAATATAAGTTTGCCAAAGTTTTTTGTACCGACTGAATCAATAGATACTCACTTTATATTGATCTTCCGAGYGGTGTCTGTTGTTGGATGGCGGTCTCGGCGACATGCGATCTAAACCAAAACAGTAAGTACATGCTGCCCTCTATTTGCACTTACAAAGTGGGGAATAGGAATTATATTCATTCTCAACCATATCGTCTCCAATGTTCAGTTGGATGACATACTTGGATGATGGCTGCTCGTTATAGATACTTTTGCGGGATGGTTGAGGACTATTGACCTGGAAGTTCAGTGACAAATGGAGAGAACGATCTATTGCAAAATCAGTGATACTTTGGATTAATATAATGTACTTGAGTTGACTAAAAAAATGTATTTTTGTCGAAAAAAATAGGGAAACTTACTGGAAAGAAGTCAATAACTTTCGCGCGCTGTTTGACATTTGGTCGTTTGATTGGAGCAGTGGCCGCTCCATTTAGGTGCAGTTGTTCATCACATGGGACGAGTGAAAGACCTCCGAATGCTTTGGAGATGGAACCTGAATTAGTTTTGAGTTAATAAGATTTTAGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>136 132 118 76 75 64 64 59 35 33 28 26 23 22 17 14 13 13 13 11 10 6 5 3 2 2</canonical_bands>
                <polymorphic_bands>136 132 118 76 75 64 64 59 35 33 28 26 25 23 17 14 13 13 13 11 10 6 5 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTCATAAATGAATTGGTCAGA</pcr_primer_p1>
		<pcr_primer_p2>AAGTATGTCATCCAACTGAACAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAGTCATAAATGAATTGGTCAGAATATAAGTTTGCCAAAGTTTTTTGTACCGACTGAATCAATAGATACTCACTTTATATTGATCTTCCGAGTGGTGTCTGTTGTTGGATGGCGGTCTCGGCGACATGCGATCTAAACCAAAACAGTAAGTACATGCTGCCCTCTATTTGCACTTACAAAGTGGGGAATAGGAATTATATTCATTCTCAACCATATCGTCTCCAATGTTCAGTTGGATGACATACTT</canonical_amplicon>
		<polymorphic_amplicon>AAGTCATAAATGAATTGGTCAGAATATAAGTTTGCCAAAGTTTTTTGTACCGACTGAATCAATAGATACTCACTTTATATTGATCTTCCGAGYGGTGTCTGTTGTTGGATGGCGGTCTCGGCGACATGCGATCTAAACCAAAACAGTAAGTACATGCTGCCCTCTATTTGCACTTACAAAGTGGGGAATAGGAATTATATTCATTCTCAACCATATCGTCTCCAATGTTCAGTTGGATGACATACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38412</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>7891</contig_pos>
        <strand>+</strand>
        <context>GAGAGAACGA[G/T]CTATTGCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGGTTGAGGACTATTGACCTGGAAGTTCAGTGACAAATGGAGAGAACGA</left_flank>
        <right_flank>CTATTGCAAAATCAGTGATACTTTGGATTAATATAATGTACTTGAGTTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCGAGGAGGGCGTAAAGCGTTTTTTGTAGTACATTATAGCCAAGTGTAGATGAGGAAGTGTGTATTCGTAGAATTAGTCTTAAAGTCGTGTGACGTGCGATGCATTACGATTGATCAGTGAACCGATCGATTTGGACCAACTTTTTCTGCCGTCCTGAATTATTACAAGTCATAAATGAATTGGTCAGAATATAAGTTTGCCAAAGTTTTTTGTACCGACTGAATCAATAGATACTCACTTTATATTGATCTTCCGAGTGGTGTCTGTTGTTGGATGGCGGTCTCGGCGACATGCGATCTAAACCAAAACAGTAAGTACATGCTGCCCTCTATTTGCACTTACAAAGTGGGGAATAGGAATTATATTCATTCTCAACCATATCGTCTCCAATGTTCAGTTGGATGACATACTTGGATGATGGCTGCTCGTTATAGATACTTTTGCGGGATGGTTGAGGACTATTGACCTGGAAGTTCAGTGACAAATGGAGAGAACGATCTATTGCAAAATCAGTGATACTTTGGATTAATATAATGTACTTGAGTTGACTAAAAAAATGTATTTTTGTCGAAAAAAATAGGGAAACTTACTGGAAAGAAGTCAATAACTTTCGCGCGCTGTTTGACATTTGGTCGTTTGATTGGAGCAGTGGCCGCTCCATTTAGGTGCAGTTGTTCATCACATGGGACGAGTGAAAGACCTCCGAATGCTTTGGAGATGGAACCTGAATTAGTTTTGAGTTAATAAGATTTTAGAAAATTTGTTTTTTGAGAAAACGGCGCTGAAAACTCGAATAACAAAATACCGTAAGATCTAAAATAAAAAGACCCAAACACCGTCGAGTTTGAGTTCAATTATCTTAATTTCTAGGCTAGACATTGGAAATGTGTCAACTGACAAAACATTTTTGATGTTACAGTAAACAATTTATCAGTTGACAACATTTTCATATCTTTGACTGGAACCAAGATAATTTGACTCAAAGTGAAAAATTAGAA</canonical>
            <polymorphic>GCCGAGGAGGGCGTAAAGCGTTTTTTGTAGTACATTATAGCCAAGTGTAGATGAGGAAGTGTGTATTCGTAGAATTAGTCTTAAAGTCGTGTGACGTGCGATGCATTACGATTGATCAGTGAACCGATCGATTTGGACCAACTTTTTCTGCCGTCCTGAATTATTACAAGTCATAAATGAATTGGTCAGAATATAAGTTTGCCAAAGTTTTTTGTACCGACTGAATCAATAGATACTCACTTTATATTGATCTTCCGAGTGGTGTCTGTTGTTGGATGGCGGTCTCGGCGACATGCGATCTAAACCAAAACAGTAAGTACATGCTGCCCTCTATTTGCACTTACAAAGTGGGGAATAGGAATTATATTCATTCTCAACCATATCGTCTCCAATGTTCAGTTGGATGACATACTTGGATGATGGCTGCTCGTTATAGATACTTTTGCGGGATGGTTGAGGACTATTGACCTGGAAGTTCAGTGACAAATGGAGAGAACGAKCTATTGCAAAATCAGTGATACTTTGGATTAATATAATGTACTTGAGTTGACTAAAAAAATGTATTTTTGTCGAAAAAAATAGGGAAACTTACTGGAAAGAAGTCAATAACTTTCGCGCGCTGTTTGACATTTGGTCGTTTGATTGGAGCAGTGGCCGCTCCATTTAGGTGCAGTTGTTCATCACATGGGACGAGTGAAAGACCTCCGAATGCTTTGGAGATGGAACCTGAATTAGTTTTGAGTTAATAAGATTTTAGAAAATTTGTTTTTTGAGAAAACGGCGCTGAAAACTCGAATAACAAAATACCGTAAGATCTAAAATAAAAAGACCCAAACACCGTCGAGTTTGAGTTCAATTATCTTAATTTCTAGGCTAGACATTGGAAATGTGTCAACTGACAAAACATTTTTGATGTTACAGTAAACAATTTATCAGTTGACAACATTTTCATATCTTTGACTGGAACCAAGATAATTTGACTCAAAGTGAAAAATTAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>315 201 188 123 113 48 12</canonical_bands>
                <polymorphic_bands>516 188 123 113 48 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAATTATATTCATTCTCAACCAT</pcr_primer_p1>
		<pcr_primer_p2>TTGACTTCTTTCCAGTAAGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGAATTATATTCATTCTCAACCATATCGTCTCCAATGTTCAGTTGGATGACATACTTGGATGATGGCTGCTCGTTATAGATACTTTTGCGGGATGGTTGAGGACTATTGACCTGGAAGTTCAGTGACAAATGGAGAGAACGATCTATTGCAAAATCAGTGATACTTTGGATTAATATAATGTACTTGAGTTGACTAAAAAAATGTATTTTTGTCGAAAAAAATAGGGAAACTTACTGGAAAGAAGTCAA</canonical_amplicon>
		<polymorphic_amplicon>GGAATTATATTCATTCTCAACCATATCGTCTCCAATGTTCAGTTGGATGACATACTTGGATGATGGCTGCTCGTTATAGATACTTTTGCGGGATGGTTGAGGACTATTGACCTGGAAGTTCAGTGACAAATGGAGAGAACGAKCTATTGCAAAATCAGTGATACTTTGGATTAATATAATGTACTTGAGTTGACTAAAAAAATGTATTTTTGTCGAAAAAAATAGGGAAACTTACTGGAAAGAAGTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38413</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>8367</contig_pos>
        <strand></strand>
        <context>accaagataa[T/A]ttgactcaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CAATTTATCAGTTGACAACATTTTCATATCTTTGACTGGAACCAAGATAA</left_flank>
        <right_flank>TTGACTCAAAGTGAAAAATTAGAAAACAGAAAACTCTACAGGTTTACAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGTGACAAATGGAGAGAACGATCTATTGCAAAATCAGTGATACTTTGGATTAATATAATGTACTTGAGTTGACTAAAAAAATGTATTTTTGTCGAAAAAAATAGGGAAACTTACTGGAAAGAAGTCAATAACTTTCGCGCGCTGTTTGACATTTGGTCGTTTGATTGGAGCAGTGGCCGCTCCATTTAGGTGCAGTTGTTCATCACATGGGACGAGTGAAAGACCTCCGAATGCTTTGGAGATGGAACCTGAATTAGTTTTGAGTTAATAAGATTTTAGAAAATTTGTTTTTTGAGAAAACGGCGCTGAAAACTCGAATAACAAAATACCGTAAGATCTAAAATAAAAAGACCCAAACACCGTCGAGTTTGAGTTCAATTATCTTAATTTCTAGGCTAGACATTGGAAATGTGTCAACTGACAAAACATTTTTGATGTTACAGTAAACAATTTATCAGTTGACAACATTTTCATATCTTTGACTGGAACCAAGATAATTTGACTCAAAGTGAAAAATTAGAAAACAGAAAACTCTACAGGTTTACAGTATTTCTATTACTCAAAATTTGAACATTTTTTTCTAAATTGCGAAAACTGGGTTTCACATTAAATAGCTATTTCACAGACACTAACCTTTAATAGAAATTGTCTCATACAGATTGCTACCCGTAGCTCGGCTCAGAGTTTCTCTGATTGGATCCTCTCTCTTCTGCGTGAGAAGAGAAGAGACCTTGGTAGCAAATCTTCCCCAAATTCCAACATCATAAATTTGAATCTCAATTGCTCGTCTCCAAATTTCATAGTCTCTATCGCTATTGGTAATTAAGTACACTGTAGACGCTGGTATCTCGTTTGTCTCATCGGTCCGGAGGAGAAATGTCCTAGGAGCCGCTGTTGGAACAATTCGGCTTCTCTGGAATTAGAGGATTTTGTGATAATCCGAAAAGCTTGATCACTTACACTGCTCAATGGAATCACAAGTACCGTGTTTTTGGAAC</canonical>
            <polymorphic>TCAGTGACAAATGGAGAGAACGATCTATTGCAAAATCAGTGATACTTTGGATTAATATAATGTACTTGAGTTGACTAAAAAAATGTATTTTTGTCGAAAAAAATAGGGAAACTTACTGGAAAGAAGTCAATAACTTTCGCGCGCTGTTTGACATTTGGTCGTTTGATTGGAGCAGTGGCCGCTCCATTTAGGTGCAGTTGTTCATCACATGGGACGAGTGAAAGACCTCCGAATGCTTTGGAGATGGAACCTGAATTAGTTTTGAGTTAATAAGATTTTAGAAAATTTGTTTTTTGAGAAAACGGCGCTGAAAACTCGAATAACAAAATACCGTAAGATCTAAAATAAAAAGACCCAAACACCGTCGAGTTTGAGTTCAATTATCTTAATTTCTAGGCTAGACATTGGAAATGTGTCAACTGACAAAACATTTTTGATGTTACAGTAAACAATTTATCAGTTGACAACATTTTCATATCTTTGACTGGAACCAAGATAAWTTGACTCAAAGTGAAAAATTAGAAAACAGAAAACTCTACAGGTTTACAGTATTTCTATTACTCAAAATTTGAACATTTTTTTCTAAATTGCGAAAACTGGGTTTCACATTAAATAGCTATTTCACAGACACTAACCTTTAATAGAAATTGTCTCATACAGATTGCTACCCGTAGCTCGGCTCAGAGTTTCTCTGATTGGATCCTCTCTCTTCTGCGTGAGAAGAGAAGAGACCTTGGTAGCAAATCTTCCCCAAATTCCAACATCATAAATTTGAATCTCAATTGCTCGTCTCCAAATTTCATAGTCTCTATCGCTATTGGTAATTAAGTACACTGTAGACGCTGGTATCTCGTTTGTCTCATCGGTCCGGAGGAGAAATGTCCTAGGAGCCGCTGTTGGAACAATTCGGCTTCTCTGGAATTAGAGGATTTTGTGATAATCCGAAAAGCTTGATCACTTACACTGCTCAATGGAATCACAAGTACCGTGTTTTTGGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>253 108 95 81 81 63 60 49 47 30 27 20 19 16 15 15 12 9</canonical_bands>
                <polymorphic_bands>253 108 95 81 81 66 63 60 49 30 27 20 16 15 15 12 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTGAAAACTCGAATAACAAA</pcr_primer_p1>
		<pcr_primer_p2>GCTATTTAATGTGAAACCCAGT</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>GCTGAAAACTCGAATAACAAAATACCGTAAGATCTAAAATAAAAAGACCCAAACACCGTCGAGTTTGAGTTCAATTATCTTAATTTCTAGGCTAGACATTGGAAATGTGTCAACTGACAAAACATTTTTGATGTTACAGTAAACAATTTATCAGTTGACAACATTTTCATATCTTTGACTGGAACCAAGATAATTTGACTCAAAGTGAAAAATTAGAAAACAGAAAACTCTACAGGTTTACAGTATTTCTATTACTCAAAATTTGAACATTTTTTTCTAAATTGCGAAAACTGGGTTTCACATTAAATAGC</canonical_amplicon>
		<polymorphic_amplicon>GCTGAAAACTCGAATAACAAAATACCGTAAGATCTAAAATAAAAAGACCCAAACACCGTCGAGTTTGAGTTCAATTATCTTAATTTCTAGGCTAGACATTGGAAATGTGTCAACTGACAAAACATTTTTGATGTTACAGTAAACAATTTATCAGTTGACAACATTTTCATATCTTTGACTGGAACCAAGATAAWTTGACTCAAAGTGAAAAATTAGAAAACAGAAAACTCTACAGGTTTACAGTATTTCTATTACTCAAAATTTGAACATTTTTTTCTAAATTGCGAAAACTGGGTTTCACATTAAATAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38414</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>8395</contig_pos>
        <strand>+</strand>
        <context>attagAAAAC[A/C]SWAAACTCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTTTGACTGGAACCAAGATAATTTGACTCAAAGTGAAAAATTAGAAAAC</left_flank>
        <right_flank>GAAAACTCTACAGGTTTACAGTATTTCTATTACTCAAAATTTGAACATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCAAAATCAGTGATACTTTGGATTAATATAATGTACTTGAGTTGACTAAAAAAATGTATTTTTGTCGAAAAAAATAGGGAAACTTACTGGAAAGAAGTCAATAACTTTCGCGCGCTGTTTGACATTTGGTCGTTTGATTGGAGCAGTGGCCGCTCCATTTAGGTGCAGTTGTTCATCACATGGGACGAGTGAAAGACCTCCGAATGCTTTGGAGATGGAACCTGAATTAGTTTTGAGTTAATAAGATTTTAGAAAATTTGTTTTTTGAGAAAACGGCGCTGAAAACTCGAATAACAAAATACCGTAAGATCTAAAATAAAAAGACCCAAACACCGTCGAGTTTGAGTTCAATTATCTTAATTTCTAGGCTAGACATTGGAAATGTGTCAACTGACAAAACATTTTTGATGTTACAGTAAACAATTTATCAGTTGACAACATTTTCATATCTTTGACTGGAACCAAGATAATTTGACTCAAAGTGAAAAATTAGAAAACAGAAAACTCTACAGGTTTACAGTATTTCTATTACTCAAAATTTGAACATTTTTTTCTAAATTGCGAAAACTGGGTTTCACATTAAATAGCTATTTCACAGACACTAACCTTTAATAGAAATTGTCTCATACAGATTGCTACCCGTAGCTCGGCTCAGAGTTTCTCTGATTGGATCCTCTCTCTTCTGCGTGAGAAGAGAAGAGACCTTGGTAGCAAATCTTCCCCAAATTCCAACATCATAAATTTGAATCTCAATTGCTCGTCTCCAAATTTCATAGTCTCTATCGCTATTGGTAATTAAGTACACTGTAGACGCTGGTATCTCGTTTGTCTCATCGGTCCGGAGGAGAAATGTCCTAGGAGCCGCTGTTGGAACAATTCGGCTTCTCTGGAATTAGAGGATTTTGTGATAATCCGAAAAGCTTGATCACTTACACTGCTCAATGGAATCACAAGTACCGTGTTTTTGGAACTATTGGCAATGTCACCAATAGAATAAAA</canonical>
            <polymorphic>TGCAAAATCAGTGATACTTTGGATTAATATAATGTACTTGAGTTGACTAAAAAAATGTATTTTTGTCGAAAAAAATAGGGAAACTTACTGGAAAGAAGTCAATAACTTTCGCGCGCTGTTTGACATTTGGTCGTTTGATTGGAGCAGTGGCCGCTCCATTTAGGTGCAGTTGTTCATCACATGGGACGAGTGAAAGACCTCCGAATGCTTTGGAGATGGAACCTGAATTAGTTTTGAGTTAATAAGATTTTAGAAAATTTGTTTTTTGAGAAAACGGCGCTGAAAACTCGAATAACAAAATACCGTAAGATCTAAAATAAAAAGACCCAAACACCGTCGAGTTTGAGTTCAATTATCTTAATTTCTAGGCTAGACATTGGAAATGTGTCAACTGACAAAACATTTTTGATGTTACAGTAAACAATTTATCAGTTGACAACATTTTCATATCTTTGACTGGAACCAAGATAATTTGACTCAAAGTGAAAAATTAGAAAACMGAAAACTCTACAGGTTTACAGTATTTCTATTACTCAAAATTTGAACATTTTTTTCTAAATTGCGAAAACTGGGTTTCACATTAAATAGCTATTTCACAGACACTAACCTTTAATAGAAATTGTCTCATACAGATTGCTACCCGTAGCTCGGCTCAGAGTTTCTCTGATTGGATCCTCTCTCTTCTGCGTGAGAAGAGAAGAGACCTTGGTAGCAAATCTTCCCCAAATTCCAACATCATAAATTTGAATCTCAATTGCTCGTCTCCAAATTTCATAGTCTCTATCGCTATTGGTAATTAAGTACACTGTAGACGCTGGTATCTCGTTTGTCTCATCGGTCCGGAGGAGAAATGTCCTAGGAGCCGCTGTTGGAACAATTCGGCTTCTCTGGAATTAGAGGATTTTGTGATAATCCGAAAAGCTTGATCACTTACACTGCTCAATGGAATCACAAGTACCGTGTTTTTGGAACTATTGGCAATGTCACCAATAGAATAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTGAAAACTCGAATAACAAA</pcr_primer_p1>
		<pcr_primer_p2>GCTATTTAATGTGAAACCCAGT</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>GCTGAAAACTCGAATAACAAAATACCGTAAGATCTAAAATAAAAAGACCCAAACACCGTCGAGTTTGAGTTCAATTATCTTAATTTCTAGGCTAGACATTGGAAATGTGTCAACTGACAAAACATTTTTGATGTTACAGTAAACAATTTATCAGTTGACAACATTTTCATATCTTTGACTGGAACCAAGATAATTTGACTCAAAGTGAAAAATTAGAAAACAGAAAACTCTACAGGTTTACAGTATTTCTATTACTCAAAATTTGAACATTTTTTTCTAAATTGCGAAAACTGGGTTTCACATTAAATAGC</canonical_amplicon>
		<polymorphic_amplicon>GCTGAAAACTCGAATAACAAAATACCGTAAGATCTAAAATAAAAAGACCCAAACACCGTCGAGTTTGAGTTCAATTATCTTAATTTCTAGGCTAGACATTGGAAATGTGTCAACTGACAAAACATTTTTGATGTTACAGTAAACAATTTATCAGTTGACAACATTTTCATATCTTTGACTGGAACCAAGATAATTTGACTCAAAGTGAAAAATTAGAAAACMGAAAACTCTACAGGTTTACAGTATTTCTATTACTCAAAATTTGAACATTTTTTTCTAAATTGCGAAAACTGGGTTTCACATTAAATAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38415</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>8396</contig_pos>
        <strand>+</strand>
        <context>ttagAAAACM[C/G]WAAACTCTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTTTGACTGGAACCAAGATAATTTGACTCAAAGTGAAAAATTAGAAAACA</left_flank>
        <right_flank>AAAACTCTACAGGTTTACAGTATTTCTATTACTCAAAATTTGAACATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAAAATCAGTGATACTTTGGATTAATATAATGTACTTGAGTTGACTAAAAAAATGTATTTTTGTCGAAAAAAATAGGGAAACTTACTGGAAAGAAGTCAATAACTTTCGCGCGCTGTTTGACATTTGGTCGTTTGATTGGAGCAGTGGCCGCTCCATTTAGGTGCAGTTGTTCATCACATGGGACGAGTGAAAGACCTCCGAATGCTTTGGAGATGGAACCTGAATTAGTTTTGAGTTAATAAGATTTTAGAAAATTTGTTTTTTGAGAAAACGGCGCTGAAAACTCGAATAACAAAATACCGTAAGATCTAAAATAAAAAGACCCAAACACCGTCGAGTTTGAGTTCAATTATCTTAATTTCTAGGCTAGACATTGGAAATGTGTCAACTGACAAAACATTTTTGATGTTACAGTAAACAATTTATCAGTTGACAACATTTTCATATCTTTGACTGGAACCAAGATAATTTGACTCAAAGTGAAAAATTAGAAAACAGAAAACTCTACAGGTTTACAGTATTTCTATTACTCAAAATTTGAACATTTTTTTCTAAATTGCGAAAACTGGGTTTCACATTAAATAGCTATTTCACAGACACTAACCTTTAATAGAAATTGTCTCATACAGATTGCTACCCGTAGCTCGGCTCAGAGTTTCTCTGATTGGATCCTCTCTCTTCTGCGTGAGAAGAGAAGAGACCTTGGTAGCAAATCTTCCCCAAATTCCAACATCATAAATTTGAATCTCAATTGCTCGTCTCCAAATTTCATAGTCTCTATCGCTATTGGTAATTAAGTACACTGTAGACGCTGGTATCTCGTTTGTCTCATCGGTCCGGAGGAGAAATGTCCTAGGAGCCGCTGTTGGAACAATTCGGCTTCTCTGGAATTAGAGGATTTTGTGATAATCCGAAAAGCTTGATCACTTACACTGCTCAATGGAATCACAAGTACCGTGTTTTTGGAACTATTGGCAATGTCACCAATAGAATAAAAA</canonical>
            <polymorphic>GCAAAATCAGTGATACTTTGGATTAATATAATGTACTTGAGTTGACTAAAAAAATGTATTTTTGTCGAAAAAAATAGGGAAACTTACTGGAAAGAAGTCAATAACTTTCGCGCGCTGTTTGACATTTGGTCGTTTGATTGGAGCAGTGGCCGCTCCATTTAGGTGCAGTTGTTCATCACATGGGACGAGTGAAAGACCTCCGAATGCTTTGGAGATGGAACCTGAATTAGTTTTGAGTTAATAAGATTTTAGAAAATTTGTTTTTTGAGAAAACGGCGCTGAAAACTCGAATAACAAAATACCGTAAGATCTAAAATAAAAAGACCCAAACACCGTCGAGTTTGAGTTCAATTATCTTAATTTCTAGGCTAGACATTGGAAATGTGTCAACTGACAAAACATTTTTGATGTTACAGTAAACAATTTATCAGTTGACAACATTTTCATATCTTTGACTGGAACCAAGATAATTTGACTCAAAGTGAAAAATTAGAAAACASAAAACTCTACAGGTTTACAGTATTTCTATTACTCAAAATTTGAACATTTTTTTCTAAATTGCGAAAACTGGGTTTCACATTAAATAGCTATTTCACAGACACTAACCTTTAATAGAAATTGTCTCATACAGATTGCTACCCGTAGCTCGGCTCAGAGTTTCTCTGATTGGATCCTCTCTCTTCTGCGTGAGAAGAGAAGAGACCTTGGTAGCAAATCTTCCCCAAATTCCAACATCATAAATTTGAATCTCAATTGCTCGTCTCCAAATTTCATAGTCTCTATCGCTATTGGTAATTAAGTACACTGTAGACGCTGGTATCTCGTTTGTCTCATCGGTCCGGAGGAGAAATGTCCTAGGAGCCGCTGTTGGAACAATTCGGCTTCTCTGGAATTAGAGGATTTTGTGATAATCCGAAAAGCTTGATCACTTACACTGCTCAATGGAATCACAAGTACCGTGTTTTTGGAACTATTGGCAATGTCACCAATAGAATAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTGAAAACTCGAATAACAAA</pcr_primer_p1>
		<pcr_primer_p2>GCTATTTAATGTGAAACCCAGT</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>GCTGAAAACTCGAATAACAAAATACCGTAAGATCTAAAATAAAAAGACCCAAACACCGTCGAGTTTGAGTTCAATTATCTTAATTTCTAGGCTAGACATTGGAAATGTGTCAACTGACAAAACATTTTTGATGTTACAGTAAACAATTTATCAGTTGACAACATTTTCATATCTTTGACTGGAACCAAGATAATTTGACTCAAAGTGAAAAATTAGAAAACAGAAAACTCTACAGGTTTACAGTATTTCTATTACTCAAAATTTGAACATTTTTTTCTAAATTGCGAAAACTGGGTTTCACATTAAATAGC</canonical_amplicon>
		<polymorphic_amplicon>GCTGAAAACTCGAATAACAAAATACCGTAAGATCTAAAATAAAAAGACCCAAACACCGTCGAGTTTGAGTTCAATTATCTTAATTTCTAGGCTAGACATTGGAAATGTGTCAACTGACAAAACATTTTTGATGTTACAGTAAACAATTTATCAGTTGACAACATTTTCATATCTTTGACTGGAACCAAGATAATTTGACTCAAAGTGAAAAATTAGAAAACASAAAACTCTACAGGTTTACAGTATTTCTATTACTCAAAATTTGAACATTTTTTTCTAAATTGCGAAAACTGGGTTTCACATTAAATAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38416</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>8397</contig_pos>
        <strand>+</strand>
        <context>tagAAAACMS[A/T]AAACTCTACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGACTGGAACCAAGATAATTTGACTCAAAGTGAAAAATTAGAAAACAG</left_flank>
        <right_flank>AAACTCTACAGGTTTACAGTATTTCTATTACTCAAAATTTGAACATTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAATCAGTGATACTTTGGATTAATATAATGTACTTGAGTTGACTAAAAAAATGTATTTTTGTCGAAAAAAATAGGGAAACTTACTGGAAAGAAGTCAATAACTTTCGCGCGCTGTTTGACATTTGGTCGTTTGATTGGAGCAGTGGCCGCTCCATTTAGGTGCAGTTGTTCATCACATGGGACGAGTGAAAGACCTCCGAATGCTTTGGAGATGGAACCTGAATTAGTTTTGAGTTAATAAGATTTTAGAAAATTTGTTTTTTGAGAAAACGGCGCTGAAAACTCGAATAACAAAATACCGTAAGATCTAAAATAAAAAGACCCAAACACCGTCGAGTTTGAGTTCAATTATCTTAATTTCTAGGCTAGACATTGGAAATGTGTCAACTGACAAAACATTTTTGATGTTACAGTAAACAATTTATCAGTTGACAACATTTTCATATCTTTGACTGGAACCAAGATAATTTGACTCAAAGTGAAAAATTAGAAAACAGAAAACTCTACAGGTTTACAGTATTTCTATTACTCAAAATTTGAACATTTTTTTCTAAATTGCGAAAACTGGGTTTCACATTAAATAGCTATTTCACAGACACTAACCTTTAATAGAAATTGTCTCATACAGATTGCTACCCGTAGCTCGGCTCAGAGTTTCTCTGATTGGATCCTCTCTCTTCTGCGTGAGAAGAGAAGAGACCTTGGTAGCAAATCTTCCCCAAATTCCAACATCATAAATTTGAATCTCAATTGCTCGTCTCCAAATTTCATAGTCTCTATCGCTATTGGTAATTAAGTACACTGTAGACGCTGGTATCTCGTTTGTCTCATCGGTCCGGAGGAGAAATGTCCTAGGAGCCGCTGTTGGAACAATTCGGCTTCTCTGGAATTAGAGGATTTTGTGATAATCCGAAAAGCTTGATCACTTACACTGCTCAATGGAATCACAAGTACCGTGTTTTTGGAACTATTGGCAATGTCACCAATAGAATAAAAAT</canonical>
            <polymorphic>CAAAATCAGTGATACTTTGGATTAATATAATGTACTTGAGTTGACTAAAAAAATGTATTTTTGTCGAAAAAAATAGGGAAACTTACTGGAAAGAAGTCAATAACTTTCGCGCGCTGTTTGACATTTGGTCGTTTGATTGGAGCAGTGGCCGCTCCATTTAGGTGCAGTTGTTCATCACATGGGACGAGTGAAAGACCTCCGAATGCTTTGGAGATGGAACCTGAATTAGTTTTGAGTTAATAAGATTTTAGAAAATTTGTTTTTTGAGAAAACGGCGCTGAAAACTCGAATAACAAAATACCGTAAGATCTAAAATAAAAAGACCCAAACACCGTCGAGTTTGAGTTCAATTATCTTAATTTCTAGGCTAGACATTGGAAATGTGTCAACTGACAAAACATTTTTGATGTTACAGTAAACAATTTATCAGTTGACAACATTTTCATATCTTTGACTGGAACCAAGATAATTTGACTCAAAGTGAAAAATTAGAAAACAGWAAACTCTACAGGTTTACAGTATTTCTATTACTCAAAATTTGAACATTTTTTTCTAAATTGCGAAAACTGGGTTTCACATTAAATAGCTATTTCACAGACACTAACCTTTAATAGAAATTGTCTCATACAGATTGCTACCCGTAGCTCGGCTCAGAGTTTCTCTGATTGGATCCTCTCTCTTCTGCGTGAGAAGAGAAGAGACCTTGGTAGCAAATCTTCCCCAAATTCCAACATCATAAATTTGAATCTCAATTGCTCGTCTCCAAATTTCATAGTCTCTATCGCTATTGGTAATTAAGTACACTGTAGACGCTGGTATCTCGTTTGTCTCATCGGTCCGGAGGAGAAATGTCCTAGGAGCCGCTGTTGGAACAATTCGGCTTCTCTGGAATTAGAGGATTTTGTGATAATCCGAAAAGCTTGATCACTTACACTGCTCAATGGAATCACAAGTACCGTGTTTTTGGAACTATTGGCAATGTCACCAATAGAATAAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTGAAAACTCGAATAACAAA</pcr_primer_p1>
		<pcr_primer_p2>GCTATTTAATGTGAAACCCAGT</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>GCTGAAAACTCGAATAACAAAATACCGTAAGATCTAAAATAAAAAGACCCAAACACCGTCGAGTTTGAGTTCAATTATCTTAATTTCTAGGCTAGACATTGGAAATGTGTCAACTGACAAAACATTTTTGATGTTACAGTAAACAATTTATCAGTTGACAACATTTTCATATCTTTGACTGGAACCAAGATAATTTGACTCAAAGTGAAAAATTAGAAAACAGAAAACTCTACAGGTTTACAGTATTTCTATTACTCAAAATTTGAACATTTTTTTCTAAATTGCGAAAACTGGGTTTCACATTAAATAGC</canonical_amplicon>
		<polymorphic_amplicon>GCTGAAAACTCGAATAACAAAATACCGTAAGATCTAAAATAAAAAGACCCAAACACCGTCGAGTTTGAGTTCAATTATCTTAATTTCTAGGCTAGACATTGGAAATGTGTCAACTGACAAAACATTTTTGATGTTACAGTAAACAATTTATCAGTTGACAACATTTTCATATCTTTGACTGGAACCAAGATAATTTGACTCAAAGTGAAAAATTAGAAAACAGWAAACTCTACAGGTTTACAGTATTTCTATTACTCAAAATTTGAACATTTTTTTCTAAATTGCGAAAACTGGGTTTCACATTAAATAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38417</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>51493</contig_pos>
        <strand>+</strand>
        <context>TCTGAAATCA[C/G]ATACATTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCCTCCAAGCTGTCCACCATTTGTTTCATCGTGTATCGCGTCTGAAATCA</left_flank>
        <right_flank>ATACATTTTTGATTTATGCTCTTTTTAAGAATTTGTTATTCCATATCTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTGGAAAATTAGAATTGAAGTTAGAAAATCTTAAAAATGATTCTAACTGTTTCTCTATAGGTCTGAAGCCATTTTTTTGGACAGCTTTAGCTTTAAAAAGTAATTATTTTGAGTAATTCAAGAGTTACGGTTTCTCTAAATCTCTCTAGAATTCAATTTAATTCGATTTACCCCGAATCTTGAACTTTTCACAATTTCCAGAAAAGCTAATACCCATGAAATGCAGTTTACTCGGTTTTACTACGGTTTGTATACAATAAACACTCACCCCATACGCATTCGTTGGTCCCTGATTCAAATTTTGTGACGATCCGGATAGTCTAGTCGACAAATTATGACTAGACGATGACATGCGTCCATTCATCATGTTGTTATGCACCGATGCGGTCAGTGTCGTTCGATTTCCAGCAGTCGACGCCGCGGACCATCCTCTCCGATCCAGTGACTCCCCTCCAAGCTGTCCACCATTTGTTTCATCGTGTATCGCGTCTGAAATCAGATACATTTTTGATTTATGCTCTTTTTAAGAATTTGTTATTCCATATCTTATTTGACCTATTTTCTCCTCTAATAAAACAATGCGTTATGTTGTTCCACCTCAAACCTTCTGTGCACACAAACCCCTGTTTTTAGGTATTGTTGGTGATCACAGAAGTGCAAGTAAAACAATGGAATTGTTGTGAATAATACATTTTGACGGTGCGCAAGAGAGGAGAAACGCTTGAATTAACGCGGGTTAACCCTATCGCATTATTTGAAACCTGAAGCTGACGCCATATATCCAGAAATTAAGGAATTGGTTTTGAAAGATAATAAAAAGTGGATTGAAAACGACTAGAATACCATTAAGTTTCTAGAACATGGATTTTTAGAGCAGAGGTTACTGTAGCTTTCGTTCTTTTTGATATACGCCAAATTACCCAATGAAAACCATTCAAGTCAGATTTAGTCAATCACACAAGATAAGCTTTTCCATCAATTAATCTGCCACTGTTTTGT</canonical>
            <polymorphic>CTTGGAAAATTAGAATTGAAGTTAGAAAATCTTAAAAATGATTCTAACTGTTTCTCTATAGGTCTGAAGCCATTTTTTTGGACAGCTTTAGCTTTAAAAAGTAATTATTTTGAGTAATTCAAGAGTTACGGTTTCTCTAAATCTCTCTAGAATTCAATTTAATTCGATTTACCCCGAATCTTGAACTTTTCACAATTTCCAGAAAAGCTAATACCCATGAAATGCAGTTTACTCGGTTTTACTACGGTTTGTATACAATAAACACTCACCCCATACGCATTCGTTGGTCCCTGATTCAAATTTTGTGACGATCCGGATAGTCTAGTCGACAAATTATGACTAGACGATGACATGCGTCCATTCATCATGTTGTTATGCACCGATGCGGTCAGTGTCGTTCGATTTCCAGCAGTCGACGCCGCGGACCATCCTCTCCGATCCAGTGACTCCCCTCCAAGCTGTCCACCATTTGTTTCATCGTGTATCGCGTCTGAAATCASATACATTTTTGATTTATGCTCTTTTTAAGAATTTGTTATTCCATATCTTATTTGACCTATTTTCTCCTCTAATAAAACAATGCGTTATGTTGTTCCACCTCAAACCTTCTGTGCACACAAACCCCTGTTTTTAGGTATTGTTGGTGATCACAGAAGTGCAAGTAAAACAATGGAATTGTTGTGAATAATACATTTTGACGGTGCGCAAGAGAGGAGAAACGCTTGAATTAACGCGGGTTAACCCTATCGCATTATTTGAAACCTGAAGCTGACGCCATATATCCAGAAATTAAGGAATTGGTTTTGAAAGATAATAAAAAGTGGATTGAAAACGACTAGAATACCATTAAGTTTCTAGAACATGGATTTTTAGAGCAGAGGTTACTGTAGCTTTCGTTCTTTTTGATATACGCCAAATTACCCAATGAAAACCATTCAAGTCAGATTTAGTCAATCACACAAGATAAGCTTTTCCATCAATTAATCTGCCACTGTTTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>444 371 65 57 56 7</canonical_bands>
                <polymorphic_bands>451 371 65 57 56</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATTATGACTAGACGATGACA</pcr_primer_p1>
		<pcr_primer_p2>GCATTGTTTTATTAGAGGAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CAAATTATGACTAGACGATGACATGCGTCCATTCATCATGTTGTTATGCACCGATGCGGTCAGTGTCGTTCGATTTCCAGCAGTCGACGCCGCGGACCATCCTCTCCGATCCAGTGACTCCCCTCCAAGCTGTCCACCATTTGTTTCATCGTGTATCGCGTCTGAAATCAGATACATTTTTGATTTATGCTCTTTTTAAGAATTTGTTATTCCATATCTTATTTGACCTATTTTCTCCTCTAATAAAACAATGC</canonical_amplicon>
		<polymorphic_amplicon>CAAATTATGACTAGACGATGACATGCGTCCATTCATCATGTTGTTATGCACCGATGCGGTCAGTGTCGTTCGATTTCCAGCAGTCGACGCCGCGGACCATCCTCTCCGATCCAGTGACTCCCCTCCAAGCTGTCCACCATTTGTTTCATCGTGTATCGCGTCTGAAATCASATACATTTTTGATTTATGCTCTTTTTAAGAATTTGTTATTCCATATCTTATTTGACCTATTTTCTCCTCTAATAAAACAATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38418</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>53292</contig_pos>
        <strand>+</strand>
        <context>GATCAGATAG[C/T]TCAGATATAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACTCCAGAATCCAGATCCTTCGGAACACAGCTGGCATCTGATCAGATAG</left_flank>
        <right_flank>TCAGATATAAATCAAATCTCGTTTCTGATTGTGTCGTTTGCTCATCACCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGTTTCTAACTAAGCCGAGTTGTTGAGGTTAGACCTTCGAACCTTTTGGCAGAGATGGTTGGAAGTGATAATGCGTGTTACCGATAAAAAATAATCTTTTTCTACGACGCTCAACAAAAAAAGTGAGAAAATTACACAGATTTTAACACTTGAAAAGAATTCAAAGACGTCAAAAAAAAACGAAACACCCACTTAAGACACTTTCCTAAATGTAAGATTTAATTCATATTTCTTCGCTCTGAACAAAGGGCAAAAATCGGAGAATTTAGAACAAGGACTCTGGAAAAAGTGGGTCCTTCCTCCTGTTTACTCCTGATCAAAGTTCCAAAAATTTTTCGAAACAGTGCAAATATACATTTCTTATCACTGCTTACTGACTGATCTTTTGAGCGTTTTTGCATGTTTCCAAGGTCATGTTTGAGCACATCAGAGCACAAAATTCCTTGGTGACTCCAGAATCCAGATCCTTCGGAACACAGCTGGCATCTGATCAGATAGCTCAGATATAAATCAAATCTCGTTTCTGATTGTGTCGTTTGCTCATCACCCACACAAGCTCGTACCACTTATGTGACCACTTGAATCTCGGGACAAGCGCACCTACTACCACCCCGAAATGATCATTCAAAGACGAACACGACATGTCATCTTTTGCCGCCGTATCAGTGGCTACGAAATTAGATGGCGGGGTAACAAAAAAAAGGTGTTCGAGAAAAAAGGAAACTATTAAAATTGGCGATTTTCAATTAGTGGAATGGTTTCATGGCAAGTACTGTAACGAGGTGTGACAGGAATTTCCCATTTGTTTCGGGTAGTTATCGAGATGGTTATTGTCTCAGAAATTCATCGCGTTTCTCGTAAAGGAATTGAAAATGGTAAAGCGATGTTAGAGATTTTGAAGTGAAAATTTGATTTAAATTTCTCAAAAATATTCTAAAATTCTCAGAAAACGTGAAAACCGTGACAGAAGAGTTCTAACTGTGAACCAATTTTTCTGCG</canonical>
            <polymorphic>GCGTTTCTAACTAAGCCGAGTTGTTGAGGTTAGACCTTCGAACCTTTTGGCAGAGATGGTTGGAAGTGATAATGCGTGTTACCGATAAAAAATAATCTTTTTCTACGACGCTCAACAAAAAAAGTGAGAAAATTACACAGATTTTAACACTTGAAAAGAATTCAAAGACGTCAAAAAAAAACGAAACACCCACTTAAGACACTTTCCTAAATGTAAGATTTAATTCATATTTCTTCGCTCTGAACAAAGGGCAAAAATCGGAGAATTTAGAACAAGGACTCTGGAAAAAGTGGGTCCTTCCTCCTGTTTACTCCTGATCAAAGTTCCAAAAATTTTTCGAAACAGTGCAAATATACATTTCTTATCACTGCTTACTGACTGATCTTTTGAGCGTTTTTGCATGTTTCCAAGGTCATGTTTGAGCACATCAGAGCACAAAATTCCTTGGTGACTCCAGAATCCAGATCCTTCGGAACACAGCTGGCATCTGATCAGATAGYTCAGATATAAATCAAATCTCGTTTCTGATTGTGTCGTTTGCTCATCACCCACACAAGCTCGTACCACTTATGTGACCACTTGAATCTCGGGACAAGCGCACCTACTACCACCCCGAAATGATCATTCAAAGACGAACACGACATGTCATCTTTTGCCGCCGTATCAGTGGCTACGAAATTAGATGGCGGGGTAACAAAAAAAAGGTGTTCGAGAAAAAAGGAAACTATTAAAATTGGCGATTTTCAATTAGTGGAATGGTTTCATGGCAAGTACTGTAACGAGGTGTGACAGGAATTTCCCATTTGTTTCGGGTAGTTATCGAGATGGTTATTGTCTCAGAAATTCATCGCGTTTCTCGTAAAGGAATTGAAAATGGTAAAGCGATGTTAGAGATTTTGAAGTGAAAATTTGATTTAAATTTCTCAAAAATATTCTAAAATTCTCAGAAAACGTGAAAACCGTGACAGAAGAGTTCTAACTGTGAACCAATTTTTCTGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>480 443 58 19</canonical_bands>
                <polymorphic_bands>480 443 77</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>489 336 107 57 11</canonical_bands>
                <polymorphic_bands>825 107 57 11</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>465 330 113 58 19 15</canonical_bands>
                <polymorphic_bands>465 330 113 77 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCGAAACAGTGCAAATATAC</pcr_primer_p1>
		<pcr_primer_p2>TCAAGTGGTCACATAAGTGGTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTCGAAACAGTGCAAATATACATTTCTTATCACTGCTTACTGACTGATCTTTTGAGCGTTTTTGCATGTTTCCAAGGTCATGTTTGAGCACATCAGAGCACAAAATTCCTTGGTGACTCCAGAATCCAGATCCTTCGGAACACAGCTGGCATCTGATCAGATAGCTCAGATATAAATCAAATCTCGTTTCTGATTGTGTCGTTTGCTCATCACCCACACAAGCTCGTACCACTTATGTGACCACTTGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCGAAACAGTGCAAATATACATTTCTTATCACTGCTTACTGACTGATCTTTTGAGCGTTTTTGCATGTTTCCAAGGTCATGTTTGAGCACATCAGAGCACAAAATTCCTTGGTGACTCCAGAATCCAGATCCTTCGGAACACAGCTGGCATCTGATCAGATAGYTCAGATATAAATCAAATCTCGTTTCTGATTGTGTCGTTTGCTCATCACCCACACAAGCTCGTACCACTTATGTGACCACTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38419</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>66919</contig_pos>
        <strand></strand>
        <context>TTRGAATCAA[A/G]GAAAAATCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTAAGTTAGTTGAACCCCTTACAGCACTTTCACTAACTTGGAATCAA</left_flank>
        <right_flank>GAAAAATCAAGGAAATCTAAATAAAAAAGTTCTAACCCACCTCTCTAAAA</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTAAAAAAAATCATAAATTGGTAAATTTGAAAAAAAAACTCCAGCACGTTTTTTGTCTAGACTTCACGCTAGTTCTAAAAAATAGAAAGTGAGGTATAAGCAATTTGTTGAAGTGCTGGTAATACTTTCTTGCTGCTAATATGTTGACAAAGTTCTTGAAAAAATCCTCCTCGAACAGACCAGGGAACAAAACGATTGACAATTTTCATTTTCAAAAAATTGGTAATTGAACCTGTTACCTAGAGGAAGTGAAAAAAATGTTGGTTCGATTTGAATTCTCTATTCAATGCAAAAAAAATAACACAACAATACCTAGTAACTGGTTAGACCAAAGGTAAAAAGGCACACTTTTGAATGGCAAAGAGAAAAATAGAGAAAGAGGTATATTCCAACATCAAGATAAAAGGAAAAGTCTATTCCGGGTCAGTCGAGTGTGAAAATGGCGACTAATTTAAGTTAGTTGAACCCCTTACAGCACTTTCACTAACTTGGAATCAAAGAAAAATCAAGGAAATCTAAATAAAAAAGTTCTAACCCACCTCTCTAAAAGGCTCATGTCTCCCGTGTCACACCGATGTAGTTTTCTTGCGTGCAGTCCACCGCCGGTCCTCAGGTGAACAGCAGCGGATGAGGATGGTTGTTGGGTAGTGGCCGAGAGGCGGCCGCTCATCATGTCGAGATCCTTGAACGACACTCGTTTCTCGGCTTTTGATAGTTGCTCAGCGGCCAGCGCCTGCGTGTTCACGTACAGCGGTATCGATGACGTGGCACTTCCACCAGAGTAGGTGTTGGGAACTCTGTGGCTTTGAGCGCATGTCGTCGTGCTGCTTCGTTTCTTATTATTATTGGTTAGCAACAAATGGTGCAGAGCATTGGGATGAACCCCCTGACGATGCATGGAGCCCGTCGAGGAGTGCGACGACGCCGACACTCGTCGCTCGATCGGGCTCCGTGGCTTGAGATTGGACGACGTGGCGGTGTGGTGTGAAGTAGCAATGA</canonical>
            <polymorphic>ACTAAAAAAAATCATAAATTGGTAAATTTGAAAAAAAAACTCCAGCACGTTTTTTGTCTAGACTTCACGCTAGTTCTAAAAAATAGAAAGTGAGGTATAAGCAATTTGTTGAAGTGCTGGTAATACTTTCTTGCTGCTAATATGTTGACAAAGTTCTTGAAAAAATCCTCCTCGAACAGACCAGGGAACAAAACGATTGACAATTTTCATTTTCAAAAAATTGGTAATTGAACCTGTTACCTAGAGGAAGTGAAAAAAATGTTGGTTCGATTTGAATTCTCTATTCAATGCAAAAAAAATAACACAACAATACCTAGTAACTGGTTAGACCAAAGGTAAAAAGGCACACTTTTGAATGGCAAAGAGAAAAATAGAGAAAGAGGTATATTCCAACATCAAGATAAAAGGAAAAGTCTATTCCGGGTCAGTCGAGTGTGAAAATGGCGACTAATTTAAGTTAGTTGAACCCCTTACAGCACTTTCACTAACTTGGAATCAARGAAAAATCAAGGAAATCTAAATAAAAAAGTTCTAACCCACCTCTCTAAAAGGCTCATGTCTCCCGTGTCACACCGATGTAGTTTTCTTGCGTGCAGTCCACCGCCGGTCCTCAGGTGAACAGCAGCGGATGAGGATGGTTGTTGGGTAGTGGCCGAGAGGCGGCCGCTCATCATGTCGAGATCCTTGAACGACACTCGTTTCTCGGCTTTTGATAGTTGCTCAGCGGCCAGCGCCTGCGTGTTCACGTACAGCGGTATCGATGACGTGGCACTTCCACCAGAGTAGGTGTTGGGAACTCTGTGGCTTTGAGCGCATGTCGTCGTGCTGCTTCGTTTCTTATTATTATTGGTTAGCAACAAATGGTGCAGAGCATTGGGATGAACCCCCTGACGATGCATGGAGCCCGTCGAGGAGTGCGACGACGCCGACACTCGTCGCTCGATCGGGCTCCGTGGCTTGAGATTGGACGACGTGGCGGTGTGGTGTGAAGTAGCAATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACTGGTTAGACCAAAGGTAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGACATGAGCCTTTTAGAGAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TAACTGGTTAGACCAAAGGTAAAAAGGCACACTTTTGAATGGCAAAGAGAAAAATAGAGAAAGAGGTATATTCCAACATCAAGATAAAAGGAAAAGTCTATTCCGGGTCAGTCGAGTGTGAAAATGGCGACTAATTTAAGTTAGTTGAACCCCTTACAGCACTTTCACTAACTTGGAATCAAAGAAAAATCAAGGAAATCTAAATAAAAAAGTTCTAACCCACCTCTCTAAAAGGCTCATGTCTC</canonical_amplicon>
		<polymorphic_amplicon>TAACTGGTTAGACCAAAGGTAAAAAGGCACACTTTTGAATGGCAAAGAGAAAAATAGAGAAAGAGGTATATTCCAACATCAAGATAAAAGGAAAAGTCTATTCCGGGTCAGTCGAGTGTGAAAATGGCGACTAATTTAAGTTAGTTGAACCCCTTACAGCACTTTCACTAACTTGGAATCAARGAAAAATCAAGGAAATCTAAATAAAAAAGTTCTAACCCACCTCTCTAAAAGGCTCATGTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38420</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>67861</contig_pos>
        <strand>+</strand>
        <context>AATAAAAAAA[A/T]ACATAAGTAC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAAAGAATCTTCGGTTGCGCAAGAGAAGAGAGATGTTAGAATAAAAAAA</left_flank>
        <right_flank>ACATAAGTACTGAATAGTCAAAAAGGGATAAGAGTGGGGTCATAAAATTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGGGCTCCGTGGCTTGAGATTGGACGACGTGGCGGTGTGGTGTGAAGTAGCAATGAACGAAATGAACGAAAATTAAGAAGATTAGAGGGGAATGGCTTTAGGTAAGACCGACGGTGTGTCCGTGGCTATGTCCTACAACACACACACACTTTTTGCCCGATAACTTTTGGTTCTTCTTTCTGTTTTTTCTCCTCTCTTCGTTTAGCCGCCTGCCTGCCAACCGTCGTCCTCTTCTTCTATTGCTTATCGTTTTGCGAATGGCGTTAATAACCCGTCCTATCACAATTCGACCAGCTTCGTCTTTTCGCCTCGTGTCCTTTTTCCGACGTTCGGCGTTGCGCAATTGAACAGAAGAACAAAGCGTTCTGCGATATTTGATGGATATATATATATATATCGGATTCAGATTCAGAATTTGTAGGTTTCGTTCTATAAGTATTTCTGTAAAAAAAGAATCTTCGGTTGCGCAAGAGAAGAGAGATGTTAGAATAAAAAAACACATAAGTACTGAATAGTCAAAAAGGGATAAGAGTGGGGTCATAAAATTGAATGGTAGACGTTGAAAATTGTTTACCGCCGACAGGTTTGAACTTGCTTTCTGATTTTATGCATTATAGTCTAATCTTTCTGTTTTGGAATGTTTCCGGTCAGTATTTGAGGAAGAGAGAGGATGAGTCAAAGGATTCATAACTAAACAGAAAGAAATAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAA</canonical>
            <polymorphic>ATCGGGCTCCGTGGCTTGAGATTGGACGACGTGGCGGTGTGGTGTGAAGTAGCAATGAACGAAATGAACGAAAATTAAGAAGATTAGAGGGGAATGGCTTTAGGTAAGACCGACGGTGTGTCCGTGGCTATGTCCTACAACACACACACACTTTTTGCCCGATAACTTTTGGTTCTTCTTTCTGTTTTTTCTCCTCTCTTCGTTTAGCCGCCTGCCTGCCAACCGTCGTCCTCTTCTTCTATTGCTTATCGTTTTGCGAATGGCGTTAATAACCCGTCCTATCACAATTCGACCAGCTTCGTCTTTTCGCCTCGTGTCCTTTTTCCGACGTTCGGCGTTGCGCAATTGAACAGAAGAACAAAGCGTTCTGCGATATTTGATGGATATATATATATATATCGGATTCAGATTCAGAATTTGTAGGTTTCGTTCTATAAGTATTTCTGTAAAAAAAGAATCTTCGGTTGCGCAAGAGAAGAGAGATGTTAGAATAAAAAAAWACATAAGTACTGAATAGTCAAAAAGGGATAAGAGTGGGGTCATAAAATTGAATGGTAGACGTTGAAAATTGTTTACCGCCGACAGGTTTGAACTTGCTTTCTGATTTTATGCATTATAGTCTAATCTTTCTGTTTTGGAATGTTTCCGGTCAGTATTTGAGGAAGAGAGAGGATGAGTCAAAGGATTCATAACTAAACAGAAAGAAATAAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTTAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>464 185 134 72 35 32 20 16 13 6 6 3 2 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>464 220 134 72 32 20 16 13 6 6 3 2 2 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTGCGATATTTGATGGATA</pcr_primer_p1>
		<pcr_primer_p2>ATAAAATCAGAAAGCAAGTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTCTGCGATATTTGATGGATATATATATATATATCGGATTCAGATTCAGAATTTGTAGGTTTCGTTCTATAAGTATTTCTGTAAAAAAAGAATCTTCGGTTGCGCAAGAGAAGAGAGATGTTAGAATAAAAAAACACATAAGTACTGAATAGTCAAAAAGGGATAAGAGTGGGGTCATAAAATTGAATGGTAGACGTTGAAAATTGTTTACCGCCGACAGGTTTGAACTTGCTTTCTGATTTTAT</canonical_amplicon>
		<polymorphic_amplicon>TTCTGCGATATTTGATGGATATATATATATATATCGGATTCAGATTCAGAATTTGTAGGTTTCGTTCTATAAGTATTTCTGTAAAAAAAGAATCTTCGGTTGCGCAAGAGAAGAGAGATGTTAGAATAAAAAAAWACATAAGTACTGAATAGTCAAAAAGGGATAAGAGTGGGGTCATAAAATTGAATGGTAGACGTTGAAAATTGTTTACCGCCGACAGGTTTGAACTTGCTTTCTGATTTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38422</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>72223</contig_pos>
        <strand></strand>
        <context>ttaattgatt[A/C]aaaaatattg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATCATTTTGTAGTACTCGCCAAATTCTATTATATTTGAATTAATTGATT</left_flank>
        <right_flank>AAAAATATTGATTCAAAAAGAAACTATGGCATGGCCTGCGAAGGGCCCGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAAATTGATTGTAGACTGCAAGATCTAGAAATTTCTTTGCAAAGCACTTCTAGATGAGCTCCTTAACTTTGAGCTAATTTATCTCGGTACCTGTCAAAGACATTGAAAAGTTGTCAACTGAAAAGTTGTTCATCATTTTATCACAAATGTTTGTTTGGTTGACAAAAATAAAATGTCTTTAACAGGAACCGAGAAAAATGAGCTCAAAGTGCATTTATCATACTTGCGACCGGGCCTTTGCCGGGCCTTTGCGGGATCTGCCAAAGTTTTTTTTAGAATCGATATTTCAAGACCAACTAAATCAGATATTATAGAACTCAACGAGTGCTACAAAATGGCATTACTTGGAAAACTGTGTTTCGTTTATGAACAAAGTTACAGGCAAAAAACTCAGCTACGTTATGACTTGTAACTTTGTTCATAGACAAGACACAATTCTCCAAATAGTATCATTTTGTAGTACTCGCCAAATTCTATTATATTTGAATTAATTGATTAAAAAATATTGATTCAAAAAGAAACTATGGCATGGCCTGCGAAGGGCCCGTCAAAGGTGCGGTCGCAAGTATGGAGAAAAGGCTTTTACTAGAGAAAAGAGGTGAATGGGCAAAATGGGCACACATTTTGAAGAAAATCGAATTCTCAAATTGTGGGAAGAAATGAGGTTACACTGGATTTGTTGCGTAATCTTGAAATTGTAGGATCAGAAGGAATTGGGTCATTTGTAAAAAAGTAAGGCAGTTGGAAAGTTTGTTTTAAGTTTCTATTTTGAGAATTTGGTTTTTTTTCAATTCTAGGCTGTGTAGCTAAATTCCAGCTGAAAATTTTCGATTTTTGAAGAATAGTAATAATGAAATTAAAAAATTGTAAGACAGTTTTTCATTGAATTGAACTTTTTAAAATTAATTTTCATCAATGACTAACAGAAGGAAACAAAGTTTTTCTCAAAAAAAAAGTACGAATTTATACAGTTTTTTCAGGCGGATGTGCTTATCACT</canonical>
            <polymorphic>CCAAAATTGATTGTAGACTGCAAGATCTAGAAATTTCTTTGCAAAGCACTTCTAGATGAGCTCCTTAACTTTGAGCTAATTTATCTCGGTACCTGTCAAAGACATTGAAAAGTTGTCAACTGAAAAGTTGTTCATCATTTTATCACAAATGTTTGTTTGGTTGACAAAAATAAAATGTCTTTAACAGGAACCGAGAAAAATGAGCTCAAAGTGCATTTATCATACTTGCGACCGGGCCTTTGCCGGGCCTTTGCGGGATCTGCCAAAGTTTTTTTTAGAATCGATATTTCAAGACCAACTAAATCAGATATTATAGAACTCAACGAGTGCTACAAAATGGCATTACTTGGAAAACTGTGTTTCGTTTATGAACAAAGTTACAGGCAAAAAACTCAGCTACGTTATGACTTGTAACTTTGTTCATAGACAAGACACAATTCTCCAAATAGTATCATTTTGTAGTACTCGCCAAATTCTATTATATTTGAATTAATTGATTMAAAAATATTGATTCAAAAAGAAACTATGGCATGGCCTGCGAAGGGCCCGTCAAAGGTGCGGTCGCAAGTATGGAGAAAAGGCTTTTACTAGAGAAAAGAGGTGAATGGGCAAAATGGGCACACATTTTGAAGAAAATCGAATTCTCAAATTGTGGGAAGAAATGAGGTTACACTGGATTTGTTGCGTAATCTTGAAATTGTAGGATCAGAAGGAATTGGGTCATTTGTAAAAAAGTAAGGCAGTTGGAAAGTTTGTTTTAAGTTTCTATTTTGAGAATTTGGTTTTTTTTCAATTCTAGGCTGTGTAGCTAAATTCCAGCTGAAAATTTTCGATTTTTGAAGAATAGTAATAATGAAATTAAAAAATTGTAAGACAGTTTTTCATTGAATTGAACTTTTTAAAATTAATTTTCATCAATGACTAACAGAAGGAAACAAAGTTTTTCTCAAAAAAAAAGTACGAATTTATACAGTTTTTTCAGGCGGATGTGCTTATCACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>309 260 116 101 95 65 40 8 6</canonical_bands>
                <polymorphic_bands>309 268 116 101 95 65 40 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTGATTGTAGACTGCAAGA</pcr_primer_p1>
		<pcr_primer_p2>AAAGCCTTTTCTCCATACTTG</pcr_primer_p2>
		<pcr_amplicon_size>583</pcr_amplicon_size>
		<canonical_amplicon>AAAATTGATTGTAGACTGCAAGATCTAGAAATTTCTTTGCAAAGCACTTCTAGATGAGCTCCTTAACTTTGAGCTAATTTATCTCGGTACCTGTCAAAGACATTGAAAAGTTGTCAACTGAAAAGTTGTTCATCATTTTATCACAAATGTTTGTTTGGTTGACAAAAATAAAATGTCTTTAACAGGAACCGAGAAAAATGAGCTCAAAGTGCATTTATCATACTTGCGACCGGGCCTTTGCCGGGCCTTTGCGGGATCTGCCAAAGTTTTTTTTAGAATCGATATTTCAAGACCAACTAAATCAGATATTATAGAACTCAACGAGTGCTACAAAATGGCATTACTTGGAAAACTGTGTTTCGTTTATGAACAAAGTTACAGGCAAAAAACTCAGCTACGTTATGACTTGTAACTTTGTTCATAGACAAGACACAATTCTCCAAATAGTATCATTTTGTAGTACTCGCCAAATTCTATTATATTTGAATTAATTGATTAAAAAATATTGATTCAAAAAGAAACTATGGCATGGCCTGCGAAGGGCCCGTCAAAGGTGCGGTCGCAAGTATGGAGAAAAGGCTTT</canonical_amplicon>
		<polymorphic_amplicon>AAAATTGATTGTAGACTGCAAGATCTAGAAATTTCTTTGCAAAGCACTTCTAGATGAGCTCCTTAACTTTGAGCTAATTTATCTCGGTACCTGTCAAAGACATTGAAAAGTTGTCAACTGAAAAGTTGTTCATCATTTTATCACAAATGTTTGTTTGGTTGACAAAAATAAAATGTCTTTAACAGGAACCGAGAAAAATGAGCTCAAAGTGCATTTATCATACTTGCGACCGGGCCTTTGCCGGGCCTTTGCGGGATCTGCCAAAGTTTTTTTTAGAATCGATATTTCAAGACCAACTAAATCAGATATTATAGAACTCAACGAGTGCTACAAAATGGCATTACTTGGAAAACTGTGTTTCGTTTATGAACAAAGTTACAGGCAAAAAACTCAGCTACGTTATGACTTGTAACTTTGTTCATAGACAAGACACAATTCTCCAAATAGTATCATTTTGTAGTACTCGCCAAATTCTATTATATTTGAATTAATTGATTMAAAAATATTGATTCAAAAAGAAACTATGGCATGGCCTGCGAAGGGCCCGTCAAAGGTGCGGTCGCAAGTATGGAGAAAAGGCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38423</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>72567</contig_pos>
        <strand>+</strand>
        <context>TTTTTGAAGA[C/T]TAGTAATAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTAGGCTGTGTAGCTAAATTCCAGCTGAAAATTTTCGATTTTTGAAGA</left_flank>
        <right_flank>TAGTAATAATGAAATTAAAAAATTGTAAGACAGTTTTTCATTGAATTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTGGAAAACTGTGTTTCGTTTATGAACAAAGTTACAGGCAAAAAACTCAGCTACGTTATGACTTGTAACTTTGTTCATAGACAAGACACAATTCTCCAAATAGTATCATTTTGTAGTACTCGCCAAATTCTATTATATTTGAATTAATTGATTAAAAAATATTGATTCAAAAAGAAACTATGGCATGGCCTGCGAAGGGCCCGTCAAAGGTGCGGTCGCAAGTATGGAGAAAAGGCTTTTACTAGAGAAAAGAGGTGAATGGGCAAAATGGGCACACATTTTGAAGAAAATCGAATTCTCAAATTGTGGGAAGAAATGAGGTTACACTGGATTTGTTGCGTAATCTTGAAATTGTAGGATCAGAAGGAATTGGGTCATTTGTAAAAAAGTAAGGCAGTTGGAAAGTTTGTTTTAAGTTTCTATTTTGAGAATTTGGTTTTTTTTCAATTCTAGGCTGTGTAGCTAAATTCCAGCTGAAAATTTTCGATTTTTGAAGAATAGTAATAATGAAATTAAAAAATTGTAAGACAGTTTTTCATTGAATTGAACTTTTTAAAATTAATTTTCATCAATGACTAACAGAAGGAAACAAAGTTTTTCTCAAAAAAAAAGTACGAATTTATACAGTTTTTTCAGGCGGATGTGCTTATCACTGGCAAAGGGAAATTTATGTTCCAATTACCCTGGCAGCATCTTTGACACTCATTTTTACACTTTTCAATCAAAATTTAGACTAAAAAAACTTCAAAAGAAGAACGTTCAAAAGTTCAGTGAAAGATCAACTTACAGTAACAAATGGGTATTCTTGTTTGTAACAACTCATGGTGCTCTGTCTGGGATCGAAAACACAGTAGCCAGCATGCCAAGGAAGTTTGACTTCTTTGTTCATCATTTTTGTTGGATTACCCTCTGAAAAATTTTAAAATTGAAAATTTCAAGGTTTCCTCTAGAATGAACAATTTTTGAAAAACGTTTGTTCAATAAGATATATCGGATAA</canonical>
            <polymorphic>ACTTGGAAAACTGTGTTTCGTTTATGAACAAAGTTACAGGCAAAAAACTCAGCTACGTTATGACTTGTAACTTTGTTCATAGACAAGACACAATTCTCCAAATAGTATCATTTTGTAGTACTCGCCAAATTCTATTATATTTGAATTAATTGATTAAAAAATATTGATTCAAAAAGAAACTATGGCATGGCCTGCGAAGGGCCCGTCAAAGGTGCGGTCGCAAGTATGGAGAAAAGGCTTTTACTAGAGAAAAGAGGTGAATGGGCAAAATGGGCACACATTTTGAAGAAAATCGAATTCTCAAATTGTGGGAAGAAATGAGGTTACACTGGATTTGTTGCGTAATCTTGAAATTGTAGGATCAGAAGGAATTGGGTCATTTGTAAAAAAGTAAGGCAGTTGGAAAGTTTGTTTTAAGTTTCTATTTTGAGAATTTGGTTTTTTTTCAATTCTAGGCTGTGTAGCTAAATTCCAGCTGAAAATTTTCGATTTTTGAAGAYTAGTAATAATGAAATTAAAAAATTGTAAGACAGTTTTTCATTGAATTGAACTTTTTAAAATTAATTTTCATCAATGACTAACAGAAGGAAACAAAGTTTTTCTCAAAAAAAAAGTACGAATTTATACAGTTTTTTCAGGCGGATGTGCTTATCACTGGCAAAGGGAAATTTATGTTCCAATTACCCTGGCAGCATCTTTGACACTCATTTTTACACTTTTCAATCAAAATTTAGACTAAAAAAACTTCAAAAGAAGAACGTTCAAAAGTTCAGTGAAAGATCAACTTACAGTAACAAATGGGTATTCTTGTTTGTAACAACTCATGGTGCTCTGTCTGGGATCGAAAACACAGTAGCCAGCATGCCAAGGAAGTTTGACTTCTTTGTTCATCATTTTTGTTGGATTACCCTCTGAAAAATTTTAAAATTGAAAATTTCAAGGTTTCCTCTAGAATGAACAATTTTTGAAAAACGTTTGTTCAATAAGATATATCGGATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGCGTAATCTTGAAATTGTAG</pcr_primer_p1>
		<pcr_primer_p2>TTCTGTTAGTCATTGATGAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTTGCGTAATCTTGAAATTGTAGGATCAGAAGGAATTGGGTCATTTGTAAAAAAGTAAGGCAGTTGGAAAGTTTGTTTTAAGTTTCTATTTTGAGAATTTGGTTTTTTTTCAATTCTAGGCTGTGTAGCTAAATTCCAGCTGAAAATTTTCGATTTTTGAAGAATAGTAATAATGAAATTAAAAAATTGTAAGACAGTTTTTCATTGAATTGAACTTTTTAAAATTAATTTTCATCAATGACTAACAGAA</canonical_amplicon>
		<polymorphic_amplicon>GTTGCGTAATCTTGAAATTGTAGGATCAGAAGGAATTGGGTCATTTGTAAAAAAGTAAGGCAGTTGGAAAGTTTGTTTTAAGTTTCTATTTTGAGAATTTGGTTTTTTTTCAATTCTAGGCTGTGTAGCTAAATTCCAGCTGAAAATTTTCGATTTTTGAAGAYTAGTAATAATGAAATTAAAAAATTGTAAGACAGTTTTTCATTGAATTGAACTTTTTAAAATTAATTTTCATCAATGACTAACAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38424</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>72672</contig_pos>
        <strand>+</strand>
        <context>AGTTTTTCWC[C/T]AAAAAAAAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAAATTAATTTTCATCAATGACTAACAGAAGGAAACAAAGTTTTTCTC</left_flank>
        <right_flank>AAAAAAAAGTACGAATTTATACAGTTTTTTCAGGCGGATGTGCTTATCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCATTTTGTAGTACTCGCCAAATTCTATTATATTTGAATTAATTGATTAAAAAATATTGATTCAAAAAGAAACTATGGCATGGCCTGCGAAGGGCCCGTCAAAGGTGCGGTCGCAAGTATGGAGAAAAGGCTTTTACTAGAGAAAAGAGGTGAATGGGCAAAATGGGCACACATTTTGAAGAAAATCGAATTCTCAAATTGTGGGAAGAAATGAGGTTACACTGGATTTGTTGCGTAATCTTGAAATTGTAGGATCAGAAGGAATTGGGTCATTTGTAAAAAAGTAAGGCAGTTGGAAAGTTTGTTTTAAGTTTCTATTTTGAGAATTTGGTTTTTTTTCAATTCTAGGCTGTGTAGCTAAATTCCAGCTGAAAATTTTCGATTTTTGAAGAATAGTAATAATGAAATTAAAAAATTGTAAGACAGTTTTTCATTGAATTGAACTTTTTAAAATTAATTTTCATCAATGACTAACAGAAGGAAACAAAGTTTTTCTCAAAAAAAAAGTACGAATTTATACAGTTTTTTCAGGCGGATGTGCTTATCACTGGCAAAGGGAAATTTATGTTCCAATTACCCTGGCAGCATCTTTGACACTCATTTTTACACTTTTCAATCAAAATTTAGACTAAAAAAACTTCAAAAGAAGAACGTTCAAAAGTTCAGTGAAAGATCAACTTACAGTAACAAATGGGTATTCTTGTTTGTAACAACTCATGGTGCTCTGTCTGGGATCGAAAACACAGTAGCCAGCATGCCAAGGAAGTTTGACTTCTTTGTTCATCATTTTTGTTGGATTACCCTCTGAAAAATTTTAAAATTGAAAATTTCAAGGTTTCCTCTAGAATGAACAATTTTTGAAAAACGTTTGTTCAATAAGATATATCGGATAAAAAGTGTGGATGACTATTTTCATCTCGAGGATCGTTTCAAGTGGCAATTAGAAAATCTCGGGGATAAGAAAAAGAAAATGATGGGGATACAATGAGTCAAGGTTG</canonical>
            <polymorphic>TATCATTTTGTAGTACTCGCCAAATTCTATTATATTTGAATTAATTGATTAAAAAATATTGATTCAAAAAGAAACTATGGCATGGCCTGCGAAGGGCCCGTCAAAGGTGCGGTCGCAAGTATGGAGAAAAGGCTTTTACTAGAGAAAAGAGGTGAATGGGCAAAATGGGCACACATTTTGAAGAAAATCGAATTCTCAAATTGTGGGAAGAAATGAGGTTACACTGGATTTGTTGCGTAATCTTGAAATTGTAGGATCAGAAGGAATTGGGTCATTTGTAAAAAAGTAAGGCAGTTGGAAAGTTTGTTTTAAGTTTCTATTTTGAGAATTTGGTTTTTTTTCAATTCTAGGCTGTGTAGCTAAATTCCAGCTGAAAATTTTCGATTTTTGAAGAATAGTAATAATGAAATTAAAAAATTGTAAGACAGTTTTTCATTGAATTGAACTTTTTAAAATTAATTTTCATCAATGACTAACAGAAGGAAACAAAGTTTTTCTCYAAAAAAAAGTACGAATTTATACAGTTTTTTCAGGCGGATGTGCTTATCACTGGCAAAGGGAAATTTATGTTCCAATTACCCTGGCAGCATCTTTGACACTCATTTTTACACTTTTCAATCAAAATTTAGACTAAAAAAACTTCAAAAGAAGAACGTTCAAAAGTTCAGTGAAAGATCAACTTACAGTAACAAATGGGTATTCTTGTTTGTAACAACTCATGGTGCTCTGTCTGGGATCGAAAACACAGTAGCCAGCATGCCAAGGAAGTTTGACTTCTTTGTTCATCATTTTTGTTGGATTACCCTCTGAAAAATTTTAAAATTGAAAATTTCAAGGTTTCCTCTAGAATGAACAATTTTTGAAAAACGTTTGTTCAATAAGATATATCGGATAAAAAGTGTGGATGACTATTTTCATCTCGAGGATCGTTTCAAGTGGCAATTAGAAAATCTCGGGGATAAGAAAAAGAAAATGATGGGGATACAATGAGTCAAGGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCAATTCTAGGCTGTGTAG</pcr_primer_p1>
		<pcr_primer_p2>CCAGGGTAATTGGAACATAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCAATTCTAGGCTGTGTAGCTAAATTCCAGCTGAAAATTTTCGATTTTTGAAGAATAGTAATAATGAAATTAAAAAATTGTAAGACAGTTTTTCATTGAATTGAACTTTTTAAAATTAATTTTCATCAATGACTAACAGAAGGAAACAAAGTTTTTCTCAAAAAAAAAGTACGAATTTATACAGTTTTTTCAGGCGGATGTGCTTATCACTGGCAAAGGGAAATTTATGTTCCAATTACCCTGG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCAATTCTAGGCTGTGTAGCTAAATTCCAGCTGAAAATTTTCGATTTTTGAAGAATAGTAATAATGAAATTAAAAAATTGTAAGACAGTTTTTCATTGAATTGAACTTTTTAAAATTAATTTTCATCAATGACTAACAGAAGGAAACAAAGTTTTTCTCYAAAAAAAAGTACGAATTTATACAGTTTTTTCAGGCGGATGTGCTTATCACTGGCAAAGGGAAATTTATGTTCCAATTACCCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38425</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>78138</contig_pos>
        <strand></strand>
        <context>ttccattttt[T/A]cgtaatttta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTT</left_flank>
        <right_flank>CGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAGTGTTTTGGAGAATTCGAAATTCTCATTTTGCAGTTCTTAATTCCAAAATTCCGAATTTATAAAATTCTGAGATCAAAGGATCTCAAAATTCAAAATTTAGGAATTCTGAAATTCCGAATAAAAATTCGAATAGAGGTGGACTTCTACAGTGCGGGCAATAACTTTAGGATTTTGGAGGTTCCAGGAGAACGGGAAGAGATATCGAAATTCTGTTAACGCCATTCGATTTGTGATAAAAAGAAACCCTAGGGGACCAATTGTCATGAATCTAATACTTTCCGTAAAAGAGTACCATCAAAAAGACCTAAATCTGGCCGGTCAATATTTTTAGGACCCCCTGAAAATTTCGAAATCTTCGCCTTTTTTTTGGAATTTTCGCTTTTAAGCTGAAAATAACTTTCAGTTTCGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTATTAGGAAAAA</canonical>
            <polymorphic>TTCAGTGTTTTGGAGAATTCGAAATTCTCATTTTGCAGTTCTTAATTCCAAAATTCCGAATTTATAAAATTCTGAGATCAAAGGATCTCAAAATTCAAAATTTAGGAATTCTGAAATTCCGAATAAAAATTCGAATAGAGGTGGACTTCTACAGTGCGGGCAATAACTTTAGGATTTTGGAGGTTCCAGGAGAACGGGAAGAGATATCGAAATTCTGTTAACGCCATTCGATTTGTGATAAAAAGAAACCCTAGGGGACCAATTGTCATGAATCTAATACTTTCCGTAAAAGAGTACCATCAAAAAGACCTAAATCTGGCCGGTCAATATTTTTAGGACCCCCTGAAAATTTCGAAATCTTCGCCTTTTTTTTGGAATTTTCGCTTTTAAGCTGAAAATAACTTTCAGTTTCGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTWCGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTATTAGGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACTTTAGGATTTTGGAGGTTC</pcr_primer_p1>
		<pcr_primer_p2>TACAGTGCGGTCAATATCTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>827</pcr_amplicon_size>
		<canonical_amplicon>TAACTTTAGGATTTTGGAGGTTCCAGGAGAACGGGAAGAGATATCGAAATTCTGTTAACGCCATTCGATTTGTGATAAAAAGAAACCCTAGGGGACCAATTGTCATGAATCTAATACTTTCCGTAAAAGAGTACCATCAAAAAGACCTAAATCTGGCCGGTCAATATTTTTAGGACCCCCTGAAAATTTCGAAATCTTCGCCTTTTTTTTGGAATTTTCGCTTTTAAGCTGAAAATAACTTTCAGTTTCGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTA</canonical_amplicon>
		<polymorphic_amplicon>TAACTTTAGGATTTTGGAGGTTCCAGGAGAACGGGAAGAGATATCGAAATTCTGTTAACGCCATTCGATTTGTGATAAAAAGAAACCCTAGGGGACCAATTGTCATGAATCTAATACTTTCCGTAAAAGAGTACCATCAAAAAGACCTAAATCTGGCCGGTCAATATTTTTAGGACCCCCTGAAAATTTCGAAATCTTCGCCTTTTTTTTGGAATTTTCGCTTTTAAGCTGAAAATAACTTTCAGTTTCGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTWCGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38426</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>78154</contig_pos>
        <strand></strand>
        <context>ttttagaaaa[T/G]tgacccaaTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAA</left_flank>
        <right_flank>TGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCGAAATTCTCATTTTGCAGTTCTTAATTCCAAAATTCCGAATTTATAAAATTCTGAGATCAAAGGATCTCAAAATTCAAAATTTAGGAATTCTGAAATTCCGAATAAAAATTCGAATAGAGGTGGACTTCTACAGTGCGGGCAATAACTTTAGGATTTTGGAGGTTCCAGGAGAACGGGAAGAGATATCGAAATTCTGTTAACGCCATTCGATTTGTGATAAAAAGAAACCCTAGGGGACCAATTGTCATGAATCTAATACTTTCCGTAAAAGAGTACCATCAAAAAGACCTAAATCTGGCCGGTCAATATTTTTAGGACCCCCTGAAAATTTCGAAATCTTCGCCTTTTTTTTGGAATTTTCGCTTTTAAGCTGAAAATAACTTTCAGTTTCGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTATTAGGAAAAATAGGGTAATACGAAGT</canonical>
            <polymorphic>ATTCGAAATTCTCATTTTGCAGTTCTTAATTCCAAAATTCCGAATTTATAAAATTCTGAGATCAAAGGATCTCAAAATTCAAAATTTAGGAATTCTGAAATTCCGAATAAAAATTCGAATAGAGGTGGACTTCTACAGTGCGGGCAATAACTTTAGGATTTTGGAGGTTCCAGGAGAACGGGAAGAGATATCGAAATTCTGTTAACGCCATTCGATTTGTGATAAAAAGAAACCCTAGGGGACCAATTGTCATGAATCTAATACTTTCCGTAAAAGAGTACCATCAAAAAGACCTAAATCTGGCCGGTCAATATTTTTAGGACCCCCTGAAAATTTCGAAATCTTCGCCTTTTTTTTGGAATTTTCGCTTTTAAGCTGAAAATAACTTTCAGTTTCGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAAKTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTATTAGGAAAAATAGGGTAATACGAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>101 87 87 83 74 62 50 50 49 43 40 29 28 28 26 24 24 21 13 10 9 9 9 8 8 8 7 7 6</canonical_bands>
                <polymorphic_bands>101 87 87 83 74 62 50 50 49 43 40 29 28 28 26 24 24 21 19 13 9 9 8 8 8 7 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAACTTTAGGATTTTGGAGGTTC</pcr_primer_p1>
		<pcr_primer_p2>TACAGTGCGGTCAATATCTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>827</pcr_amplicon_size>
		<canonical_amplicon>TAACTTTAGGATTTTGGAGGTTCCAGGAGAACGGGAAGAGATATCGAAATTCTGTTAACGCCATTCGATTTGTGATAAAAAGAAACCCTAGGGGACCAATTGTCATGAATCTAATACTTTCCGTAAAAGAGTACCATCAAAAAGACCTAAATCTGGCCGGTCAATATTTTTAGGACCCCCTGAAAATTTCGAAATCTTCGCCTTTTTTTTGGAATTTTCGCTTTTAAGCTGAAAATAACTTTCAGTTTCGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTA</canonical_amplicon>
		<polymorphic_amplicon>TAACTTTAGGATTTTGGAGGTTCCAGGAGAACGGGAAGAGATATCGAAATTCTGTTAACGCCATTCGATTTGTGATAAAAAGAAACCCTAGGGGACCAATTGTCATGAATCTAATACTTTCCGTAAAAGAGTACCATCAAAAAGACCTAAATCTGGCCGGTCAATATTTTTAGGACCCCCTGAAAATTTCGAAATCTTCGCCTTTTTTTTGGAATTTTCGCTTTTAAGCTGAAAATAACTTTCAGTTTCGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAAKTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38427</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>78167</contig_pos>
        <strand></strand>
        <context>acccaaTTTT[T/C]ggaacatcac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTT</left_flank>
        <right_flank>GGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTGCAGTTCTTAATTCCAAAATTCCGAATTTATAAAATTCTGAGATCAAAGGATCTCAAAATTCAAAATTTAGGAATTCTGAAATTCCGAATAAAAATTCGAATAGAGGTGGACTTCTACAGTGCGGGCAATAACTTTAGGATTTTGGAGGTTCCAGGAGAACGGGAAGAGATATCGAAATTCTGTTAACGCCATTCGATTTGTGATAAAAAGAAACCCTAGGGGACCAATTGTCATGAATCTAATACTTTCCGTAAAAGAGTACCATCAAAAAGACCTAAATCTGGCCGGTCAATATTTTTAGGACCCCCTGAAAATTTCGAAATCTTCGCCTTTTTTTTGGAATTTTCGCTTTTAAGCTGAAAATAACTTTCAGTTTCGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTATTAGGAAAAATAGGGTAATACGAAGTCCTCTCATATTTG</canonical>
            <polymorphic>ATTTTGCAGTTCTTAATTCCAAAATTCCGAATTTATAAAATTCTGAGATCAAAGGATCTCAAAATTCAAAATTTAGGAATTCTGAAATTCCGAATAAAAATTCGAATAGAGGTGGACTTCTACAGTGCGGGCAATAACTTTAGGATTTTGGAGGTTCCAGGAGAACGGGAAGAGATATCGAAATTCTGTTAACGCCATTCGATTTGTGATAAAAAGAAACCCTAGGGGACCAATTGTCATGAATCTAATACTTTCCGTAAAAGAGTACCATCAAAAAGACCTAAATCTGGCCGGTCAATATTTTTAGGACCCCCTGAAAATTTCGAAATCTTCGCCTTTTTTTTGGAATTTTCGCTTTTAAGCTGAAAATAACTTTCAGTTTCGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTTYGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTATTAGGAAAAATAGGGTAATACGAAGTCCTCTCATATTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNTGG</site>
                <isoschizomers>
                    <enzyme>AccB7I</enzyme>
                    <enzyme>PflBI</enzyme>
                    <enzyme>PflMI</enzyme>
                    <enzyme>Van91I</enzyme>
                </isoschizomers>
                <canonical_bands>502 450 48</canonical_bands>
                <polymorphic_bands>550 450</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAACTTTAGGATTTTGGAGGTTC</pcr_primer_p1>
		<pcr_primer_p2>TACAGTGCGGTCAATATCTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>827</pcr_amplicon_size>
		<canonical_amplicon>TAACTTTAGGATTTTGGAGGTTCCAGGAGAACGGGAAGAGATATCGAAATTCTGTTAACGCCATTCGATTTGTGATAAAAAGAAACCCTAGGGGACCAATTGTCATGAATCTAATACTTTCCGTAAAAGAGTACCATCAAAAAGACCTAAATCTGGCCGGTCAATATTTTTAGGACCCCCTGAAAATTTCGAAATCTTCGCCTTTTTTTTGGAATTTTCGCTTTTAAGCTGAAAATAACTTTCAGTTTCGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTA</canonical_amplicon>
		<polymorphic_amplicon>TAACTTTAGGATTTTGGAGGTTCCAGGAGAACGGGAAGAGATATCGAAATTCTGTTAACGCCATTCGATTTGTGATAAAAAGAAACCCTAGGGGACCAATTGTCATGAATCTAATACTTTCCGTAAAAGAGTACCATCAAAAAGACCTAAATCTGGCCGGTCAATATTTTTAGGACCCCCTGAAAATTTCGAAATCTTCGCCTTTTTTTTGGAATTTTCGCTTTTAAGCTGAAAATAACTTTCAGTTTCGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTTYGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38428</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>78203</contig_pos>
        <strand></strand>
        <context>tcaaggcttt[A/T]actgcgctcc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTT</left_flank>
        <right_flank>ACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAATTCTGAGATCAAAGGATCTCAAAATTCAAAATTTAGGAATTCTGAAATTCCGAATAAAAATTCGAATAGAGGTGGACTTCTACAGTGCGGGCAATAACTTTAGGATTTTGGAGGTTCCAGGAGAACGGGAAGAGATATCGAAATTCTGTTAACGCCATTCGATTTGTGATAAAAAGAAACCCTAGGGGACCAATTGTCATGAATCTAATACTTTCCGTAAAAGAGTACCATCAAAAAGACCTAAATCTGGCCGGTCAATATTTTTAGGACCCCCTGAAAATTTCGAAATCTTCGCCTTTTTTTTGGAATTTTCGCTTTTAAGCTGAAAATAACTTTCAGTTTCGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTATTAGGAAAAATAGGGTAATACGAAGTCCTCTCATATTTGGATTTTTCAGTAAAAATCGTCAATCTTGATTTCCAA</canonical>
            <polymorphic>AAAATTCTGAGATCAAAGGATCTCAAAATTCAAAATTTAGGAATTCTGAAATTCCGAATAAAAATTCGAATAGAGGTGGACTTCTACAGTGCGGGCAATAACTTTAGGATTTTGGAGGTTCCAGGAGAACGGGAAGAGATATCGAAATTCTGTTAACGCCATTCGATTTGTGATAAAAAGAAACCCTAGGGGACCAATTGTCATGAATCTAATACTTTCCGTAAAAGAGTACCATCAAAAAGACCTAAATCTGGCCGGTCAATATTTTTAGGACCCCCTGAAAATTTCGAAATCTTCGCCTTTTTTTTGGAATTTTCGCTTTTAAGCTGAAAATAACTTTCAGTTTCGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTWACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTATTAGGAAAAATAGGGTAATACGAAGTCCTCTCATATTTGGATTTTTCAGTAAAAATCGTCAATCTTGATTTCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>326 176 169 153 132 44</canonical_bands>
                <polymorphic_bands>326 308 169 153 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAACTTTAGGATTTTGGAGGTTC</pcr_primer_p1>
		<pcr_primer_p2>TACAGTGCGGTCAATATCTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>827</pcr_amplicon_size>
		<canonical_amplicon>TAACTTTAGGATTTTGGAGGTTCCAGGAGAACGGGAAGAGATATCGAAATTCTGTTAACGCCATTCGATTTGTGATAAAAAGAAACCCTAGGGGACCAATTGTCATGAATCTAATACTTTCCGTAAAAGAGTACCATCAAAAAGACCTAAATCTGGCCGGTCAATATTTTTAGGACCCCCTGAAAATTTCGAAATCTTCGCCTTTTTTTTGGAATTTTCGCTTTTAAGCTGAAAATAACTTTCAGTTTCGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTA</canonical_amplicon>
		<polymorphic_amplicon>TAACTTTAGGATTTTGGAGGTTCCAGGAGAACGGGAAGAGATATCGAAATTCTGTTAACGCCATTCGATTTGTGATAAAAAGAAACCCTAGGGGACCAATTGTCATGAATCTAATACTTTCCGTAAAAGAGTACCATCAAAAAGACCTAAATCTGGCCGGTCAATATTTTTAGGACCCCCTGAAAATTTCGAAATCTTCGCCTTTTTTTTGGAATTTTCGCTTTTAAGCTGAAAATAACTTTCAGTTTCGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTWACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38429</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>78248</contig_pos>
        <strand></strand>
        <context>atcatattct[C/T]tatgttccaC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCT</left_flank>
        <right_flank>TATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAAATTCCGAATAAAAATTCGAATAGAGGTGGACTTCTACAGTGCGGGCAATAACTTTAGGATTTTGGAGGTTCCAGGAGAACGGGAAGAGATATCGAAATTCTGTTAACGCCATTCGATTTGTGATAAAAAGAAACCCTAGGGGACCAATTGTCATGAATCTAATACTTTCCGTAAAAGAGTACCATCAAAAAGACCTAAATCTGGCCGGTCAATATTTTTAGGACCCCCTGAAAATTTCGAAATCTTCGCCTTTTTTTTGGAATTTTCGCTTTTAAGCTGAAAATAACTTTCAGTTTCGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTATTAGGAAAAATAGGGTAATACGAAGTCCTCTCATATTTGGATTTTTCAGTAAAAATCGTCAATCTTGATTTCCAAAATGAGTATTCTAGATTGTAATTGATTAGTTTGATATGATAATTT</canonical>
            <polymorphic>CTGAAATTCCGAATAAAAATTCGAATAGAGGTGGACTTCTACAGTGCGGGCAATAACTTTAGGATTTTGGAGGTTCCAGGAGAACGGGAAGAGATATCGAAATTCTGTTAACGCCATTCGATTTGTGATAAAAAGAAACCCTAGGGGACCAATTGTCATGAATCTAATACTTTCCGTAAAAGAGTACCATCAAAAAGACCTAAATCTGGCCGGTCAATATTTTTAGGACCCCCTGAAAATTTCGAAATCTTCGCCTTTTTTTTGGAATTTTCGCTTTTAAGCTGAAAATAACTTTCAGTTTCGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTYTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTATTAGGAAAAATAGGGTAATACGAAGTCCTCTCATATTTGGATTTTTCAGTAAAAATCGTCAATCTTGATTTCCAAAATGAGTATTCTAGATTGTAATTGATTAGTTTGATATGATAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACTTTAGGATTTTGGAGGTTC</pcr_primer_p1>
		<pcr_primer_p2>TACAGTGCGGTCAATATCTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>827</pcr_amplicon_size>
		<canonical_amplicon>TAACTTTAGGATTTTGGAGGTTCCAGGAGAACGGGAAGAGATATCGAAATTCTGTTAACGCCATTCGATTTGTGATAAAAAGAAACCCTAGGGGACCAATTGTCATGAATCTAATACTTTCCGTAAAAGAGTACCATCAAAAAGACCTAAATCTGGCCGGTCAATATTTTTAGGACCCCCTGAAAATTTCGAAATCTTCGCCTTTTTTTTGGAATTTTCGCTTTTAAGCTGAAAATAACTTTCAGTTTCGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTA</canonical_amplicon>
		<polymorphic_amplicon>TAACTTTAGGATTTTGGAGGTTCCAGGAGAACGGGAAGAGATATCGAAATTCTGTTAACGCCATTCGATTTGTGATAAAAAGAAACCCTAGGGGACCAATTGTCATGAATCTAATACTTTCCGTAAAAGAGTACCATCAAAAAGACCTAAATCTGGCCGGTCAATATTTTTAGGACCCCCTGAAAATTTCGAAATCTTCGCCTTTTTTTTGGAATTTTCGCTTTTAAGCTGAAAATAACTTTCAGTTTCGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTYTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38430</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>78361</contig_pos>
        <strand></strand>
        <context>gcacgaaact[A/G]aaaattattt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACT</left_flank>
        <right_flank>AAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATTCGATTTGTGATAAAAAGAAACCCTAGGGGACCAATTGTCATGAATCTAATACTTTCCGTAAAAGAGTACCATCAAAAAGACCTAAATCTGGCCGGTCAATATTTTTAGGACCCCCTGAAAATTTCGAAATCTTCGCCTTTTTTTTGGAATTTTCGCTTTTAAGCTGAAAATAACTTTCAGTTTCGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTATTAGGAAAAATAGGGTAATACGAAGTCCTCTCATATTTGGATTTTTCAGTAAAAATCGTCAATCTTGATTTCCAAAATGAGTATTCTAGATTGTAATTGATTAGTTTGATATGATAATTTCTAGACTTGCTGAACCAAAATAGAGCTTCAATTTCGTAGTTGCACAACTTTTTAAACATACTCATCTTCATCAACGAGGTACCGAATTTTCCAGGAATCACAATGAGCTGCGA</canonical>
            <polymorphic>CCATTCGATTTGTGATAAAAAGAAACCCTAGGGGACCAATTGTCATGAATCTAATACTTTCCGTAAAAGAGTACCATCAAAAAGACCTAAATCTGGCCGGTCAATATTTTTAGGACCCCCTGAAAATTTCGAAATCTTCGCCTTTTTTTTGGAATTTTCGCTTTTAAGCTGAAAATAACTTTCAGTTTCGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTRAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTATTAGGAAAAATAGGGTAATACGAAGTCCTCTCATATTTGGATTTTTCAGTAAAAATCGTCAATCTTGATTTCCAAAATGAGTATTCTAGATTGTAATTGATTAGTTTGATATGATAATTTCTAGACTTGCTGAACCAAAATAGAGCTTCAATTTCGTAGTTGCACAACTTTTTAAACATACTCATCTTCATCAACGAGGTACCGAATTTTCCAGGAATCACAATGAGCTGCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACTTTAGGATTTTGGAGGTTC</pcr_primer_p1>
		<pcr_primer_p2>TACAGTGCGGTCAATATCTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>827</pcr_amplicon_size>
		<canonical_amplicon>TAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTA</canonical_amplicon>
		<polymorphic_amplicon>TRAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38431</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>78403</contig_pos>
        <strand></strand>
        <context>gacaaaaaat[G/T]accaagattg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAAT</left_flank>
        <right_flank>ACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATGAATCTAATACTTTCCGTAAAAGAGTACCATCAAAAAGACCTAAATCTGGCCGGTCAATATTTTTAGGACCCCCTGAAAATTTCGAAATCTTCGCCTTTTTTTTGGAATTTTCGCTTTTAAGCTGAAAATAACTTTCAGTTTCGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTATTAGGAAAAATAGGGTAATACGAAGTCCTCTCATATTTGGATTTTTCAGTAAAAATCGTCAATCTTGATTTCCAAAATGAGTATTCTAGATTGTAATTGATTAGTTTGATATGATAATTTCTAGACTTGCTGAACCAAAATAGAGCTTCAATTTCGTAGTTGCACAACTTTTTAAACATACTCATCTTCATCAACGAGGTACCGAATTTTCCAGGAATCACAATGAGCTGCGATATATTAAGAGGCATCTCTTATTTGGATGAAAGTTTACAAAA</canonical>
            <polymorphic>TCATGAATCTAATACTTTCCGTAAAAGAGTACCATCAAAAAGACCTAAATCTGGCCGGTCAATATTTTTAGGACCCCCTGAAAATTTCGAAATCTTCGCCTTTTTTTTGGAATTTTCGCTTTTAAGCTGAAAATAACTTTCAGTTTCGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATKACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTATTAGGAAAAATAGGGTAATACGAAGTCCTCTCATATTTGGATTTTTCAGTAAAAATCGTCAATCTTGATTTCCAAAATGAGTATTCTAGATTGTAATTGATTAGTTTGATATGATAATTTCTAGACTTGCTGAACCAAAATAGAGCTTCAATTTCGTAGTTGCACAACTTTTTAAACATACTCATCTTCATCAACGAGGTACCGAATTTTCCAGGAATCACAATGAGCTGCGATATATTAAGAGGCATCTCTTATTTGGATGAAAGTTTACAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACTTTAGGATTTTGGAGGTTC</pcr_primer_p1>
		<pcr_primer_p2>TACAGTGCGGTCAATATCTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>827</pcr_amplicon_size>
		<canonical_amplicon>TGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTA</canonical_amplicon>
		<polymorphic_amplicon>TKACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38432</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>78470</contig_pos>
        <strand></strand>
        <context>tctttttggt[A/G]gtactcttat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGT</left_flank>
        <right_flank>GTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAGGACCCCCTGAAAATTTCGAAATCTTCGCCTTTTTTTTGGAATTTTCGCTTTTAAGCTGAAAATAACTTTCAGTTTCGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTATTAGGAAAAATAGGGTAATACGAAGTCCTCTCATATTTGGATTTTTCAGTAAAAATCGTCAATCTTGATTTCCAAAATGAGTATTCTAGATTGTAATTGATTAGTTTGATATGATAATTTCTAGACTTGCTGAACCAAAATAGAGCTTCAATTTCGTAGTTGCACAACTTTTTAAACATACTCATCTTCATCAACGAGGTACCGAATTTTCCAGGAATCACAATGAGCTGCGATATATTAAGAGGCATCTCTTATTTGGATGAAAGTTTACAAAAAAGTTATCAACTACTAAGTTTGAGCAATATACTTGTTTAGTCTATCAGAAAAGTGTCAACACCATCT</canonical>
            <polymorphic>TTAGGACCCCCTGAAAATTTCGAAATCTTCGCCTTTTTTTTGGAATTTTCGCTTTTAAGCTGAAAATAACTTTCAGTTTCGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTRGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTATTAGGAAAAATAGGGTAATACGAAGTCCTCTCATATTTGGATTTTTCAGTAAAAATCGTCAATCTTGATTTCCAAAATGAGTATTCTAGATTGTAATTGATTAGTTTGATATGATAATTTCTAGACTTGCTGAACCAAAATAGAGCTTCAATTTCGTAGTTGCACAACTTTTTAAACATACTCATCTTCATCAACGAGGTACCGAATTTTCCAGGAATCACAATGAGCTGCGATATATTAAGAGGCATCTCTTATTTGGATGAAAGTTTACAAAAAAGTTATCAACTACTAAGTTTGAGCAATATACTTGTTTAGTCTATCAGAAAAGTGTCAACACCATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGTACT</site>
                <isoschizomers>
                    <enzyme>Acc113I</enzyme>
                    <enzyme>ScaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 286 214</canonical_bands>
                <polymorphic_bands>786 214</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAACTTTAGGATTTTGGAGGTTC</pcr_primer_p1>
		<pcr_primer_p2>TACAGTGCGGTCAATATCTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>827</pcr_amplicon_size>
		<canonical_amplicon>TAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTA</canonical_amplicon>
		<polymorphic_amplicon>TRGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38433</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>78481</contig_pos>
        <strand></strand>
        <context>gtactcttat[A/G]cggaaagtgg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTAT</left_flank>
        <right_flank>CGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAATTTCGAAATCTTCGCCTTTTTTTTGGAATTTTCGCTTTTAAGCTGAAAATAACTTTCAGTTTCGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTATTAGGAAAAATAGGGTAATACGAAGTCCTCTCATATTTGGATTTTTCAGTAAAAATCGTCAATCTTGATTTCCAAAATGAGTATTCTAGATTGTAATTGATTAGTTTGATATGATAATTTCTAGACTTGCTGAACCAAAATAGAGCTTCAATTTCGTAGTTGCACAACTTTTTAAACATACTCATCTTCATCAACGAGGTACCGAATTTTCCAGGAATCACAATGAGCTGCGATATATTAAGAGGCATCTCTTATTTGGATGAAAGTTTACAAAAAAGTTATCAACTACTAAGTTTGAGCAATATACTTGTTTAGTCTATCAGAAAAGTGTCAACACCATCTTTATTAAGCTT</canonical>
            <polymorphic>TGAAAATTTCGAAATCTTCGCCTTTTTTTTGGAATTTTCGCTTTTAAGCTGAAAATAACTTTCAGTTTCGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATRCGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTATTAGGAAAAATAGGGTAATACGAAGTCCTCTCATATTTGGATTTTTCAGTAAAAATCGTCAATCTTGATTTCCAAAATGAGTATTCTAGATTGTAATTGATTAGTTTGATATGATAATTTCTAGACTTGCTGAACCAAAATAGAGCTTCAATTTCGTAGTTGCACAACTTTTTAAACATACTCATCTTCATCAACGAGGTACCGAATTTTCCAGGAATCACAATGAGCTGCGATATATTAAGAGGCATCTCTTATTTGGATGAAAGTTTACAAAAAAGTTATCAACTACTAAGTTTGAGCAATATACTTGTTTAGTCTATCAGAAAAGTGTCAACACCATCTTTATTAAGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACTTTAGGATTTTGGAGGTTC</pcr_primer_p1>
		<pcr_primer_p2>TACAGTGCGGTCAATATCTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>827</pcr_amplicon_size>
		<canonical_amplicon>TACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTA</canonical_amplicon>
		<polymorphic_amplicon>TRCGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38434</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>78524</contig_pos>
        <strand></strand>
        <context>ctagggtttc[T/C]ytctatcctg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTC</left_flank>
        <right_flank>TTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAGCTGAAAATAACTTTCAGTTTCGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTATTAGGAAAAATAGGGTAATACGAAGTCCTCTCATATTTGGATTTTTCAGTAAAAATCGTCAATCTTGATTTCCAAAATGAGTATTCTAGATTGTAATTGATTAGTTTGATATGATAATTTCTAGACTTGCTGAACCAAAATAGAGCTTCAATTTCGTAGTTGCACAACTTTTTAAACATACTCATCTTCATCAACGAGGTACCGAATTTTCCAGGAATCACAATGAGCTGCGATATATTAAGAGGCATCTCTTATTTGGATGAAAGTTTACAAAAAAGTTATCAACTACTAAGTTTGAGCAATATACTTGTTTAGTCTATCAGAAAAGTGTCAACACCATCTTTATTAAGCTTACTTCATTTTTTAAACATTCAAAATTGACAATTTCTCAAGAAA</canonical>
            <polymorphic>TTAAGCTGAAAATAACTTTCAGTTTCGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCYTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTATTAGGAAAAATAGGGTAATACGAAGTCCTCTCATATTTGGATTTTTCAGTAAAAATCGTCAATCTTGATTTCCAAAATGAGTATTCTAGATTGTAATTGATTAGTTTGATATGATAATTTCTAGACTTGCTGAACCAAAATAGAGCTTCAATTTCGTAGTTGCACAACTTTTTAAACATACTCATCTTCATCAACGAGGTACCGAATTTTCCAGGAATCACAATGAGCTGCGATATATTAAGAGGCATCTCTTATTTGGATGAAAGTTTACAAAAAAGTTATCAACTACTAAGTTTGAGCAATATACTTGTTTAGTCTATCAGAAAAGTGTCAACACCATCTTTATTAAGCTTACTTCATTTTTTAAACATTCAAAATTGACAATTTCTCAAGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACTTTAGGATTTTGGAGGTTC</pcr_primer_p1>
		<pcr_primer_p2>TACAGTGCGGTCAATATCTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>827</pcr_amplicon_size>
		<canonical_amplicon>CTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTA</canonical_amplicon>
		<polymorphic_amplicon>CYTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38435</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>78525</contig_pos>
        <strand></strand>
        <context>tagggtttcy[T/C]tctatcctga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCT</left_flank>
        <right_flank>TCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGCTGAAAATAACTTTCAGTTTCGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTATTAGGAAAAATAGGGTAATACGAAGTCCTCTCATATTTGGATTTTTCAGTAAAAATCGTCAATCTTGATTTCCAAAATGAGTATTCTAGATTGTAATTGATTAGTTTGATATGATAATTTCTAGACTTGCTGAACCAAAATAGAGCTTCAATTTCGTAGTTGCACAACTTTTTAAACATACTCATCTTCATCAACGAGGTACCGAATTTTCCAGGAATCACAATGAGCTGCGATATATTAAGAGGCATCTCTTATTTGGATGAAAGTTTACAAAAAAGTTATCAACTACTAAGTTTGAGCAATATACTTGTTTAGTCTATCAGAAAAGTGTCAACACCATCTTTATTAAGCTTACTTCATTTTTTAAACATTCAAAATTGACAATTTCTCAAGAAAG</canonical>
            <polymorphic>TAAGCTGAAAATAACTTTCAGTTTCGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTYTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTATTAGGAAAAATAGGGTAATACGAAGTCCTCTCATATTTGGATTTTTCAGTAAAAATCGTCAATCTTGATTTCCAAAATGAGTATTCTAGATTGTAATTGATTAGTTTGATATGATAATTTCTAGACTTGCTGAACCAAAATAGAGCTTCAATTTCGTAGTTGCACAACTTTTTAAACATACTCATCTTCATCAACGAGGTACCGAATTTTCCAGGAATCACAATGAGCTGCGATATATTAAGAGGCATCTCTTATTTGGATGAAAGTTTACAAAAAAGTTATCAACTACTAAGTTTGAGCAATATACTTGTTTAGTCTATCAGAAAAGTGTCAACACCATCTTTATTAAGCTTACTTCATTTTTTAAACATTCAAAATTGACAATTTCTCAAGAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACTTTAGGATTTTGGAGGTTC</pcr_primer_p1>
		<pcr_primer_p2>TACAGTGCGGTCAATATCTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>827</pcr_amplicon_size>
		<canonical_amplicon>TTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTA</canonical_amplicon>
		<polymorphic_amplicon>TYTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38436</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>78549</contig_pos>
        <strand></strand>
        <context>gaatgacgtt[T/C]ayagaatttc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTT</left_flank>
        <right_flank>ATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTATTAGGAAAAATAGGGTAATACGAAGTCCTCTCATATTTGGATTTTTCAGTAAAAATCGTCAATCTTGATTTCCAAAATGAGTATTCTAGATTGTAATTGATTAGTTTGATATGATAATTTCTAGACTTGCTGAACCAAAATAGAGCTTCAATTTCGTAGTTGCACAACTTTTTAAACATACTCATCTTCATCAACGAGGTACCGAATTTTCCAGGAATCACAATGAGCTGCGATATATTAAGAGGCATCTCTTATTTGGATGAAAGTTTACAAAAAAGTTATCAACTACTAAGTTTGAGCAATATACTTGTTTAGTCTATCAGAAAAGTGTCAACACCATCTTTATTAAGCTTACTTCATTTTTTAAACATTCAAAATTGACAATTTCTCAAGAAAGATGGATTGAACTATTGACCAATAC</canonical>
            <polymorphic>CGCGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTYATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTATTAGGAAAAATAGGGTAATACGAAGTCCTCTCATATTTGGATTTTTCAGTAAAAATCGTCAATCTTGATTTCCAAAATGAGTATTCTAGATTGTAATTGATTAGTTTGATATGATAATTTCTAGACTTGCTGAACCAAAATAGAGCTTCAATTTCGTAGTTGCACAACTTTTTAAACATACTCATCTTCATCAACGAGGTACCGAATTTTCCAGGAATCACAATGAGCTGCGATATATTAAGAGGCATCTCTTATTTGGATGAAAGTTTACAAAAAAGTTATCAACTACTAAGTTTGAGCAATATACTTGTTTAGTCTATCAGAAAAGTGTCAACACCATCTTTATTAAGCTTACTTCATTTTTTAAACATTCAAAATTGACAATTTCTCAAGAAAGATGGATTGAACTATTGACCAATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACTTTAGGATTTTGGAGGTTC</pcr_primer_p1>
		<pcr_primer_p2>TACAGTGCGGTCAATATCTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>827</pcr_amplicon_size>
		<canonical_amplicon>TTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTA</canonical_amplicon>
		<polymorphic_amplicon>TYATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38437</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>78551</contig_pos>
        <strand></strand>
        <context>atgacgttya[T/C]agaatttcga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTA</left_flank>
        <right_flank>AGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTATTAGGAAAAATAGGGTAATACGAAGTCCTCTCATATTTGGATTTTTCAGTAAAAATCGTCAATCTTGATTTCCAAAATGAGTATTCTAGATTGTAATTGATTAGTTTGATATGATAATTTCTAGACTTGCTGAACCAAAATAGAGCTTCAATTTCGTAGTTGCACAACTTTTTAAACATACTCATCTTCATCAACGAGGTACCGAATTTTCCAGGAATCACAATGAGCTGCGATATATTAAGAGGCATCTCTTATTTGGATGAAAGTTTACAAAAAAGTTATCAACTACTAAGTTTGAGCAATATACTTGTTTAGTCTATCAGAAAAGTGTCAACACCATCTTTATTAAGCTTACTTCATTTTTTAAACATTCAAAATTGACAATTTCTCAAGAAAGATGGATTGAACTATTGACCAATACTG</canonical>
            <polymorphic>CGCTTTTTTTGATACATTTTTATGAGTATCTCAAACAATTTTCATAATATGTCGACTTTCCAAATTATGGTTTTTTTTCCATTTTTTCGTAATTTTAGAAAATTGACCCAATTTTTGGAACATCACAGTGTCTGTACACAATCAAGGCTTTAACTGCGCTCCCAGTACCTAAATTGGATTCTCAACATCATATTCTCTATGTTCCACCAAAAATTACGAAAAAATGGAAAAAATGATGATTTGGAAAGTCGACAAATTATGAAAATTCTTCGAGATACTTATTAAAATGTACCAAAAAAGCACGAAACTAAAAATTATTTTCAGTTTAAAAGCAAAAATTCGACAAAAAATGACCAAGATTGCGAAATTTTCAGGGGGTCCTAAAGATATTTACCGTTCAGAAATAGGTCTTTTTGGTAGTACTCTTATACGGAAAGTGGTAAAATCATGAAAATTTGTCCCCTAGGGTTTCTTTCTATCCTGAATAGAATGACGTTTAYAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTATTAGGAAAAATAGGGTAATACGAAGTCCTCTCATATTTGGATTTTTCAGTAAAAATCGTCAATCTTGATTTCCAAAATGAGTATTCTAGATTGTAATTGATTAGTTTGATATGATAATTTCTAGACTTGCTGAACCAAAATAGAGCTTCAATTTCGTAGTTGCACAACTTTTTAAACATACTCATCTTCATCAACGAGGTACCGAATTTTCCAGGAATCACAATGAGCTGCGATATATTAAGAGGCATCTCTTATTTGGATGAAAGTTTACAAAAAAGTTATCAACTACTAAGTTTGAGCAATATACTTGTTTAGTCTATCAGAAAAGTGTCAACACCATCTTTATTAAGCTTACTTCATTTTTTAAACATTCAAAATTGACAATTTCTCAAGAAAGATGGATTGAACTATTGACCAATACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAACTTTAGGATTTTGGAGGTTC</pcr_primer_p1>
		<pcr_primer_p2>TACAGTGCGGTCAATATCTTTAG</pcr_primer_p2>
		<pcr_amplicon_size>827</pcr_amplicon_size>
		<canonical_amplicon>ATAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTA</canonical_amplicon>
		<polymorphic_amplicon>AYAGAATTTCGATATCTCTTCCCGTTCTCCTGGAACCGCCAAAATCGAGGGGGGTCCTAAAGATATTGACCGCACTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38438</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>79535</contig_pos>
        <strand></strand>
        <context>CAAAAAATGA[T/C]ATGAAGGAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGA</left_flank>
        <right_flank>ATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATTGACCAATACTGTTTCAAGTAAGTCATACAAAAAACAAACATTTTATGAAAATTCGAAATTTGAAAACCTTAAGAAACTTCACAAAACTAAATTATTGAGAGTAGTAGGCAATCAAACAAGGAACAAAGCAATCGGCAACTTCAAAAATAGAATGACTATGGTCCACCGCTCTGATGAATCAAGAAACTAACTCATAACTAGGCAAAAGCCGCCATTTCTCTTCCATTTTCTTTCACCGTCATTCTGTACGGCATGAAAAGGCTCGCCAAAACGTTTCAAGTACACAACACCTCTCGTTTATGGTATTTTGAGATTTGTTTACTCTACGATTCCGAGCCTAGGGGACAATGGGAATGAAATGAGGGGAGTGTATGTGTGTGTGTTTTTTTTCAAATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAAC</canonical>
            <polymorphic>CTATTGACCAATACTGTTTCAAGTAAGTCATACAAAAAACAAACATTTTATGAAAATTCGAAATTTGAAAACCTTAAGAAACTTCACAAAACTAAATTATTGAGAGTAGTAGGCAATCAAACAAGGAACAAAGCAATCGGCAACTTCAAAAATAGAATGACTATGGTCCACCGCTCTGATGAATCAAGAAACTAACTCATAACTAGGCAAAAGCCGCCATTTCTCTTCCATTTTCTTTCACCGTCATTCTGTACGGCATGAAAAGGCTCGCCAAAACGTTTCAAGTACACAACACCTCTCGTTTATGGTATTTTGAGATTTGTTTACTCTACGATTCCGAGCCTAGGGGACAATGGGAATGAAATGAGGGGAGTGTATGTGTGTGTGTTTTTTTTCAAATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGAYATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAATTTGGGAATGAAAACAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCAATAGGCATATAAATGTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGG</canonical_amplicon>
		<polymorphic_amplicon>ATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGAYATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38439</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>79616</contig_pos>
        <strand></strand>
        <context>GAACACTGTT[G/T]TCTYATGATA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTT</left_flank>
        <right_flank>TCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTCACAAAACTAAATTATTGAGAGTAGTAGGCAATCAAACAAGGAACAAAGCAATCGGCAACTTCAAAAATAGAATGACTATGGTCCACCGCTCTGATGAATCAAGAAACTAACTCATAACTAGGCAAAAGCCGCCATTTCTCTTCCATTTTCTTTCACCGTCATTCTGTACGGCATGAAAAGGCTCGCCAAAACGTTTCAAGTACACAACACCTCTCGTTTATGGTATTTTGAGATTTGTTTACTCTACGATTCCGAGCCTAGGGGACAATGGGAATGAAATGAGGGGAGTGTATGTGTGTGTGTTTTTTTTCAAATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCGTAGTCAGTCTTGCAGCATTCTCAAAACTGATGCTCGGTTTCAAGTCAATTTATCTCGGTTTCTTGGAGAGATATGA</canonical>
            <polymorphic>CTTCACAAAACTAAATTATTGAGAGTAGTAGGCAATCAAACAAGGAACAAAGCAATCGGCAACTTCAAAAATAGAATGACTATGGTCCACCGCTCTGATGAATCAAGAAACTAACTCATAACTAGGCAAAAGCCGCCATTTCTCTTCCATTTTCTTTCACCGTCATTCTGTACGGCATGAAAAGGCTCGCCAAAACGTTTCAAGTACACAACACCTCTCGTTTATGGTATTTTGAGATTTGTTTACTCTACGATTCCGAGCCTAGGGGACAATGGGAATGAAATGAGGGGAGTGTATGTGTGTGTGTTTTTTTTCAAATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTKTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCGTAGTCAGTCTTGCAGCATTCTCAAAACTGATGCTCGGTTTCAAGTCAATTTATCTCGGTTTCTTGGAGAGATATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAATTTGGGAATGAAAACAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCAATAGGCATATAAATGTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGG</canonical_amplicon>
		<polymorphic_amplicon>ATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTKTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38440</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>79620</contig_pos>
        <strand></strand>
        <context>ACTGTTKTCT[C/T]ATGATATGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCT</left_flank>
        <right_flank>ATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAAAACTAAATTATTGAGAGTAGTAGGCAATCAAACAAGGAACAAAGCAATCGGCAACTTCAAAAATAGAATGACTATGGTCCACCGCTCTGATGAATCAAGAAACTAACTCATAACTAGGCAAAAGCCGCCATTTCTCTTCCATTTTCTTTCACCGTCATTCTGTACGGCATGAAAAGGCTCGCCAAAACGTTTCAAGTACACAACACCTCTCGTTTATGGTATTTTGAGATTTGTTTACTCTACGATTCCGAGCCTAGGGGACAATGGGAATGAAATGAGGGGAGTGTATGTGTGTGTGTTTTTTTTCAAATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCGTAGTCAGTCTTGCAGCATTCTCAAAACTGATGCTCGGTTTCAAGTCAATTTATCTCGGTTTCTTGGAGAGATATGAAAAA</canonical>
            <polymorphic>ACAAAACTAAATTATTGAGAGTAGTAGGCAATCAAACAAGGAACAAAGCAATCGGCAACTTCAAAAATAGAATGACTATGGTCCACCGCTCTGATGAATCAAGAAACTAACTCATAACTAGGCAAAAGCCGCCATTTCTCTTCCATTTTCTTTCACCGTCATTCTGTACGGCATGAAAAGGCTCGCCAAAACGTTTCAAGTACACAACACCTCTCGTTTATGGTATTTTGAGATTTGTTTACTCTACGATTCCGAGCCTAGGGGACAATGGGAATGAAATGAGGGGAGTGTATGTGTGTGTGTTTTTTTTCAAATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTYATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCGTAGTCAGTCTTGCAGCATTCTCAAAACTGATGCTCGGTTTCAAGTCAATTTATCTCGGTTTCTTGGAGAGATATGAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 188 173 140</canonical_bands>
                <polymorphic_bands>687 173 140</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>328 188 172 172 140</canonical_bands>
                <polymorphic_bands>516 172 172 140</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>400 188 172 140 100</canonical_bands>
                <polymorphic_bands>588 172 140 100</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAATTTGGGAATGAAAACAAAT</pcr_primer_p1>
		<pcr_primer_p2>CCAATAGGCATATAAATGTTAGC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGG</canonical_amplicon>
		<polymorphic_amplicon>ATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTYATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38441</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>79699</contig_pos>
        <strand></strand>
        <context>TGGTGGAAAT[A/G]AAGGTAGTGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAAT</left_flank>
        <right_flank>AAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTCCACCGCTCTGATGAATCAAGAAACTAACTCATAACTAGGCAAAAGCCGCCATTTCTCTTCCATTTTCTTTCACCGTCATTCTGTACGGCATGAAAAGGCTCGCCAAAACGTTTCAAGTACACAACACCTCTCGTTTATGGTATTTTGAGATTTGTTTACTCTACGATTCCGAGCCTAGGGGACAATGGGAATGAAATGAGGGGAGTGTATGTGTGTGTGTTTTTTTTCAAATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCGTAGTCAGTCTTGCAGCATTCTCAAAACTGATGCTCGGTTTCAAGTCAATTTATCTCGGTTTCTTGGAGAGATATGAAAAAAAGGTATACTGACAAAAAGTTCATTATAATATCAAAAATATTTCGTTTGTTGAACGCTTTTTGATATTTCTCACACGAA</canonical>
            <polymorphic>GGTCCACCGCTCTGATGAATCAAGAAACTAACTCATAACTAGGCAAAAGCCGCCATTTCTCTTCCATTTTCTTTCACCGTCATTCTGTACGGCATGAAAAGGCTCGCCAAAACGTTTCAAGTACACAACACCTCTCGTTTATGGTATTTTGAGATTTGTTTACTCTACGATTCCGAGCCTAGGGGACAATGGGAATGAAATGAGGGGAGTGTATGTGTGTGTGTTTTTTTTCAAATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATRAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCGTAGTCAGTCTTGCAGCATTCTCAAAACTGATGCTCGGTTTCAAGTCAATTTATCTCGGTTTCTTGGAGAGATATGAAAAAAAGGTATACTGACAAAAAGTTCATTATAATATCAAAAATATTTCGTTTGTTGAACGCTTTTTGATATTTCTCACACGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGAACAAGGATAAGAAGGAT</pcr_primer_p1>
		<pcr_primer_p2>AACGGGCCTTTCTATTACAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATRAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38442</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>79759</contig_pos>
        <strand></strand>
        <context>TTGcttggct[C/T]caaggcaaga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCT</left_flank>
        <right_flank>CAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCCATTTTCTTTCACCGTCATTCTGTACGGCATGAAAAGGCTCGCCAAAACGTTTCAAGTACACAACACCTCTCGTTTATGGTATTTTGAGATTTGTTTACTCTACGATTCCGAGCCTAGGGGACAATGGGAATGAAATGAGGGGAGTGTATGTGTGTGTGTTTTTTTTCAAATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCGTAGTCAGTCTTGCAGCATTCTCAAAACTGATGCTCGGTTTCAAGTCAATTTATCTCGGTTTCTTGGAGAGATATGAAAAAAAGGTATACTGACAAAAAGTTCATTATAATATCAAAAATATTTCGTTTGTTGAACGCTTTTTGATATTTCTCACACGAACCGAGATAAATTGACTCAAAGTTAGAAATTTCAGACAATTCTGAGCGAGTGCTGTTTTCT</canonical>
            <polymorphic>CTTCCATTTTCTTTCACCGTCATTCTGTACGGCATGAAAAGGCTCGCCAAAACGTTTCAAGTACACAACACCTCTCGTTTATGGTATTTTGAGATTTGTTTACTCTACGATTCCGAGCCTAGGGGACAATGGGAATGAAATGAGGGGAGTGTATGTGTGTGTGTTTTTTTTCAAATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTYCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCGTAGTCAGTCTTGCAGCATTCTCAAAACTGATGCTCGGTTTCAAGTCAATTTATCTCGGTTTCTTGGAGAGATATGAAAAAAAGGTATACTGACAAAAAGTTCATTATAATATCAAAAATATTTCGTTTGTTGAACGCTTTTTGATATTTCTCACACGAACCGAGATAAATTGACTCAAAGTTAGAAATTTCAGACAATTCTGAGCGAGTGCTGTTTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>500 382 118</canonical_bands>
                <polymorphic_bands>882 118</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>403 292 206 99</canonical_bands>
                <polymorphic_bands>403 305 292</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>500 382 118</canonical_bands>
                <polymorphic_bands>882 118</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATATGCCTATTGGTAGCAGGT</pcr_primer_p1>
		<pcr_primer_p2>TCAAATTCAAACTAGTAAGCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>275</pcr_amplicon_size>
		<canonical_amplicon>TATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGA</canonical_amplicon>
		<polymorphic_amplicon>TATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTYCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38443</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>79773</contig_pos>
        <strand></strand>
        <context>ggcaagatat[T/C]aaatacgtgt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATAT</left_flank>
        <right_flank>AAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACCGTCATTCTGTACGGCATGAAAAGGCTCGCCAAAACGTTTCAAGTACACAACACCTCTCGTTTATGGTATTTTGAGATTTGTTTACTCTACGATTCCGAGCCTAGGGGACAATGGGAATGAAATGAGGGGAGTGTATGTGTGTGTGTTTTTTTTCAAATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCGTAGTCAGTCTTGCAGCATTCTCAAAACTGATGCTCGGTTTCAAGTCAATTTATCTCGGTTTCTTGGAGAGATATGAAAAAAAGGTATACTGACAAAAAGTTCATTATAATATCAAAAATATTTCGTTTGTTGAACGCTTTTTGATATTTCTCACACGAACCGAGATAAATTGACTCAAAGTTAGAAATTTCAGACAATTCTGAGCGAGTGCTGTTTTCTAGTAGGCAAATGGT</canonical>
            <polymorphic>CACCGTCATTCTGTACGGCATGAAAAGGCTCGCCAAAACGTTTCAAGTACACAACACCTCTCGTTTATGGTATTTTGAGATTTGTTTACTCTACGATTCCGAGCCTAGGGGACAATGGGAATGAAATGAGGGGAGTGTATGTGTGTGTGTTTTTTTTCAAATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATYAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCGTAGTCAGTCTTGCAGCATTCTCAAAACTGATGCTCGGTTTCAAGTCAATTTATCTCGGTTTCTTGGAGAGATATGAAAAAAAGGTATACTGACAAAAAGTTCATTATAATATCAAAAATATTTCGTTTGTTGAACGCTTTTTGATATTTCTCACACGAACCGAGATAAATTGACTCAAAGTTAGAAATTTCAGACAATTCTGAGCGAGTGCTGTTTTCTAGTAGGCAAATGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>451 270 231 48</canonical_bands>
                <polymorphic_bands>451 279 270</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATATCTAATCACTTAAACCCTGT</pcr_primer_p1>
		<pcr_primer_p2>TCAAATTCAAACTAGTAAGCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>GAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGA</canonical_amplicon>
		<polymorphic_amplicon>GAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATYAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38444</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>79789</contig_pos>
        <strand></strand>
        <context>cgtgtcaact[G/A]ataaaatgtt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACT</left_flank>
        <right_flank>ATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCATGAAAAGGCTCGCCAAAACGTTTCAAGTACACAACACCTCTCGTTTATGGTATTTTGAGATTTGTTTACTCTACGATTCCGAGCCTAGGGGACAATGGGAATGAAATGAGGGGAGTGTATGTGTGTGTGTTTTTTTTCAAATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCGTAGTCAGTCTTGCAGCATTCTCAAAACTGATGCTCGGTTTCAAGTCAATTTATCTCGGTTTCTTGGAGAGATATGAAAAAAAGGTATACTGACAAAAAGTTCATTATAATATCAAAAATATTTCGTTTGTTGAACGCTTTTTGATATTTCTCACACGAACCGAGATAAATTGACTCAAAGTTAGAAATTTCAGACAATTCTGAGCGAGTGCTGTTTTCTAGTAGGCAAATGGTTGTAGGAGCCGGCCAG</canonical>
            <polymorphic>GGCATGAAAAGGCTCGCCAAAACGTTTCAAGTACACAACACCTCTCGTTTATGGTATTTTGAGATTTGTTTACTCTACGATTCCGAGCCTAGGGGACAATGGGAATGAAATGAGGGGAGTGTATGTGTGTGTGTTTTTTTTCAAATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTRATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCGTAGTCAGTCTTGCAGCATTCTCAAAACTGATGCTCGGTTTCAAGTCAATTTATCTCGGTTTCTTGGAGAGATATGAAAAAAAGGTATACTGACAAAAAGTTCATTATAATATCAAAAATATTTCGTTTGTTGAACGCTTTTTGATATTTCTCACACGAACCGAGATAAATTGACTCAAAGTTAGAAATTTCAGACAATTCTGAGCGAGTGCTGTTTTCTAGTAGGCAAATGGTTGTAGGAGCCGGCCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATATCTAATCACTTAAACCCTGT</pcr_primer_p1>
		<pcr_primer_p2>TCAAATTCAAACTAGTAAGCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>GAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGA</canonical_amplicon>
		<polymorphic_amplicon>GAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTRATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38445</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>79808</contig_pos>
        <strand></strand>
        <context>ttggtggcat[C/T]atgataaaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCAT</left_flank>
        <right_flank>ATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAAC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACGTTTCAAGTACACAACACCTCTCGTTTATGGTATTTTGAGATTTGTTTACTCTACGATTCCGAGCCTAGGGGACAATGGGAATGAAATGAGGGGAGTGTATGTGTGTGTGTTTTTTTTCAAATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCGTAGTCAGTCTTGCAGCATTCTCAAAACTGATGCTCGGTTTCAAGTCAATTTATCTCGGTTTCTTGGAGAGATATGAAAAAAAGGTATACTGACAAAAAGTTCATTATAATATCAAAAATATTTCGTTTGTTGAACGCTTTTTGATATTTCTCACACGAACCGAGATAAATTGACTCAAAGTTAGAAATTTCAGACAATTCTGAGCGAGTGCTGTTTTCTAGTAGGCAAATGGTTGTAGGAGCCGGCCAGGTTGAATAGGTTGGGAATA</canonical>
            <polymorphic>AAACGTTTCAAGTACACAACACCTCTCGTTTATGGTATTTTGAGATTTGTTTACTCTACGATTCCGAGCCTAGGGGACAATGGGAATGAAATGAGGGGAGTGTATGTGTGTGTGTTTTTTTTCAAATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATYATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCGTAGTCAGTCTTGCAGCATTCTCAAAACTGATGCTCGGTTTCAAGTCAATTTATCTCGGTTTCTTGGAGAGATATGAAAAAAAGGTATACTGACAAAAAGTTCATTATAATATCAAAAATATTTCGTTTGTTGAACGCTTTTTGATATTTCTCACACGAACCGAGATAAATTGACTCAAAGTTAGAAATTTCAGACAATTCTGAGCGAGTGCTGTTTTCTAGTAGGCAAATGGTTGTAGGAGCCGGCCAGGTTGAATAGGTTGGGAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>361 311 188 140</canonical_bands>
                <polymorphic_bands>361 328 311</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>360 312 188 140</canonical_bands>
                <polymorphic_bands>360 328 312</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>360 312 188 140</canonical_bands>
                <polymorphic_bands>360 328 312</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATATCTAATCACTTAAACCCTGT</pcr_primer_p1>
		<pcr_primer_p2>TCAAATTCAAACTAGTAAGCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>GAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGA</canonical_amplicon>
		<polymorphic_amplicon>GAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATYATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38446</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>79820</contig_pos>
        <strand></strand>
        <context>tgataaaaaa[A/T]ttaccagttg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAA</left_flank>
        <right_flank>TTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACACAACACCTCTCGTTTATGGTATTTTGAGATTTGTTTACTCTACGATTCCGAGCCTAGGGGACAATGGGAATGAAATGAGGGGAGTGTATGTGTGTGTGTTTTTTTTCAAATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCGTAGTCAGTCTTGCAGCATTCTCAAAACTGATGCTCGGTTTCAAGTCAATTTATCTCGGTTTCTTGGAGAGATATGAAAAAAAGGTATACTGACAAAAAGTTCATTATAATATCAAAAATATTTCGTTTGTTGAACGCTTTTTGATATTTCTCACACGAACCGAGATAAATTGACTCAAAGTTAGAAATTTCAGACAATTCTGAGCGAGTGCTGTTTTCTAGTAGGCAAATGGTTGTAGGAGCCGGCCAGGTTGAATAGGTTGGGAATAGGTGTGCGGTAG</canonical>
            <polymorphic>TACACAACACCTCTCGTTTATGGTATTTTGAGATTTGTTTACTCTACGATTCCGAGCCTAGGGGACAATGGGAATGAAATGAGGGGAGTGTATGTGTGTGTGTTTTTTTTCAAATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAWTTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCGTAGTCAGTCTTGCAGCATTCTCAAAACTGATGCTCGGTTTCAAGTCAATTTATCTCGGTTTCTTGGAGAGATATGAAAAAAAGGTATACTGACAAAAAGTTCATTATAATATCAAAAATATTTCGTTTGTTGAACGCTTTTTGATATTTCTCACACGAACCGAGATAAATTGACTCAAAGTTAGAAATTTCAGACAATTCTGAGCGAGTGCTGTTTTCTAGTAGGCAAATGGTTGTAGGAGCCGGCCAGGTTGAATAGGTTGGGAATAGGTGTGCGGTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>365 121 121 115 85 70 47 30 18 18 10</canonical_bands>
                <polymorphic_bands>412 121 121 115 85 70 30 18 18 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATATCTAATCACTTAAACCCTGT</pcr_primer_p1>
		<pcr_primer_p2>TCAAATTCAAACTAGTAAGCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>GAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGA</canonical_amplicon>
		<polymorphic_amplicon>GAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAWTTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38447</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>79835</contig_pos>
        <strand></strand>
        <context>cagttgacct[C/T]attttgataa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCT</left_flank>
        <right_flank>ATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTATGGTATTTTGAGATTTGTTTACTCTACGATTCCGAGCCTAGGGGACAATGGGAATGAAATGAGGGGAGTGTATGTGTGTGTGTTTTTTTTCAAATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCGTAGTCAGTCTTGCAGCATTCTCAAAACTGATGCTCGGTTTCAAGTCAATTTATCTCGGTTTCTTGGAGAGATATGAAAAAAAGGTATACTGACAAAAAGTTCATTATAATATCAAAAATATTTCGTTTGTTGAACGCTTTTTGATATTTCTCACACGAACCGAGATAAATTGACTCAAAGTTAGAAATTTCAGACAATTCTGAGCGAGTGCTGTTTTCTAGTAGGCAAATGGTTGTAGGAGCCGGCCAGGTTGAATAGGTTGGGAATAGGTGTGCGGTAGGGACGCAAAATATTG</canonical>
            <polymorphic>GTTTATGGTATTTTGAGATTTGTTTACTCTACGATTCCGAGCCTAGGGGACAATGGGAATGAAATGAGGGGAGTGTATGTGTGTGTGTTTTTTTTCAAATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTYATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCGTAGTCAGTCTTGCAGCATTCTCAAAACTGATGCTCGGTTTCAAGTCAATTTATCTCGGTTTCTTGGAGAGATATGAAAAAAAGGTATACTGACAAAAAGTTCATTATAATATCAAAAATATTTCGTTTGTTGAACGCTTTTTGATATTTCTCACACGAACCGAGATAAATTGACTCAAAGTTAGAAATTTCAGACAATTCTGAGCGAGTGCTGTTTTCTAGTAGGCAAATGGTTGTAGGAGCCGGCCAGGTTGAATAGGTTGGGAATAGGTGTGCGGTAGGGACGCAAAATATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATATCTAATCACTTAAACCCTGT</pcr_primer_p1>
		<pcr_primer_p2>TCAAATTCAAACTAGTAAGCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>GAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGA</canonical_amplicon>
		<polymorphic_amplicon>GAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTYATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38448</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>79877</contig_pos>
        <strand></strand>
        <context>attgactcaa[A/G]gttgaaggwg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAA</left_flank>
        <right_flank>GTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGGGGACAATGGGAATGAAATGAGGGGAGTGTATGTGTGTGTGTTTTTTTTCAAATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCGTAGTCAGTCTTGCAGCATTCTCAAAACTGATGCTCGGTTTCAAGTCAATTTATCTCGGTTTCTTGGAGAGATATGAAAAAAAGGTATACTGACAAAAAGTTCATTATAATATCAAAAATATTTCGTTTGTTGAACGCTTTTTGATATTTCTCACACGAACCGAGATAAATTGACTCAAAGTTAGAAATTTCAGACAATTCTGAGCGAGTGCTGTTTTCTAGTAGGCAAATGGTTGTAGGAGCCGGCCAGGTTGAATAGGTTGGGAATAGGTGTGCGGTAGGGACGCAAAATATTGAGTCATAAAAGATTTAGAATGAAACAATTCAGCTATAAATTT</canonical>
            <polymorphic>CTAGGGGACAATGGGAATGAAATGAGGGGAGTGTATGTGTGTGTGTTTTTTTTCAAATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAARGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCGTAGTCAGTCTTGCAGCATTCTCAAAACTGATGCTCGGTTTCAAGTCAATTTATCTCGGTTTCTTGGAGAGATATGAAAAAAAGGTATACTGACAAAAAGTTCATTATAATATCAAAAATATTTCGTTTGTTGAACGCTTTTTGATATTTCTCACACGAACCGAGATAAATTGACTCAAAGTTAGAAATTTCAGACAATTCTGAGCGAGTGCTGTTTTCTAGTAGGCAAATGGTTGTAGGAGCCGGCCAGGTTGAATAGGTTGGGAATAGGTGTGCGGTAGGGACGCAAAATATTGAGTCATAAAAGATTTAGAATGAAACAATTCAGCTATAAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATATCTAATCACTTAAACCCTGT</pcr_primer_p1>
		<pcr_primer_p2>TCAAATTCAAACTAGTAAGCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>GAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGA</canonical_amplicon>
		<polymorphic_amplicon>GAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAARGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38449</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>79886</contig_pos>
        <strand></strand>
        <context>argttgaagg[T/A]gtcycttctg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGG</left_flank>
        <right_flank>GTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGGGAATGAAATGAGGGGAGTGTATGTGTGTGTGTTTTTTTTCAAATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCGTAGTCAGTCTTGCAGCATTCTCAAAACTGATGCTCGGTTTCAAGTCAATTTATCTCGGTTTCTTGGAGAGATATGAAAAAAAGGTATACTGACAAAAAGTTCATTATAATATCAAAAATATTTCGTTTGTTGAACGCTTTTTGATATTTCTCACACGAACCGAGATAAATTGACTCAAAGTTAGAAATTTCAGACAATTCTGAGCGAGTGCTGTTTTCTAGTAGGCAAATGGTTGTAGGAGCCGGCCAGGTTGAATAGGTTGGGAATAGGTGTGCGGTAGGGACGCAAAATATTGAGTCATAAAAGATTTAGAATGAAACAATTCAGCTATAAATTTTAATATTGA</canonical>
            <polymorphic>AATGGGAATGAAATGAGGGGAGTGTATGTGTGTGTGTTTTTTTTCAAATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGWGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCGTAGTCAGTCTTGCAGCATTCTCAAAACTGATGCTCGGTTTCAAGTCAATTTATCTCGGTTTCTTGGAGAGATATGAAAAAAAGGTATACTGACAAAAAGTTCATTATAATATCAAAAATATTTCGTTTGTTGAACGCTTTTTGATATTTCTCACACGAACCGAGATAAATTGACTCAAAGTTAGAAATTTCAGACAATTCTGAGCGAGTGCTGTTTTCTAGTAGGCAAATGGTTGTAGGAGCCGGCCAGGTTGAATAGGTTGGGAATAGGTGTGCGGTAGGGACGCAAAATATTGAGTCATAAAAGATTTAGAATGAAACAATTCAGCTATAAATTTTAATATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>237 84 84 72 62 60 55 54 43 38 34 26 26 24 21 19 15 14 6 6 5 3 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>237 110 84 72 62 60 55 54 43 38 34 26 24 21 19 15 14 6 6 5 3 2 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATATCTAATCACTTAAACCCTGT</pcr_primer_p1>
		<pcr_primer_p2>TCAAATTCAAACTAGTAAGCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>GAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGA</canonical_amplicon>
		<polymorphic_amplicon>GAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGWGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38450</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>79890</contig_pos>
        <strand></strand>
        <context>tgaaggwgtc[T/C]cttctgctgc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTC</left_flank>
        <right_flank>CTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAATGAAATGAGGGGAGTGTATGTGTGTGTGTTTTTTTTCAAATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCGTAGTCAGTCTTGCAGCATTCTCAAAACTGATGCTCGGTTTCAAGTCAATTTATCTCGGTTTCTTGGAGAGATATGAAAAAAAGGTATACTGACAAAAAGTTCATTATAATATCAAAAATATTTCGTTTGTTGAACGCTTTTTGATATTTCTCACACGAACCGAGATAAATTGACTCAAAGTTAGAAATTTCAGACAATTCTGAGCGAGTGCTGTTTTCTAGTAGGCAAATGGTTGTAGGAGCCGGCCAGGTTGAATAGGTTGGGAATAGGTGTGCGGTAGGGACGCAAAATATTGAGTCATAAAAGATTTAGAATGAAACAATTCAGCTATAAATTTTAATATTGAATAG</canonical>
            <polymorphic>GGAATGAAATGAGGGGAGTGTATGTGTGTGTGTTTTTTTTCAAATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCYCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCGTAGTCAGTCTTGCAGCATTCTCAAAACTGATGCTCGGTTTCAAGTCAATTTATCTCGGTTTCTTGGAGAGATATGAAAAAAAGGTATACTGACAAAAAGTTCATTATAATATCAAAAATATTTCGTTTGTTGAACGCTTTTTGATATTTCTCACACGAACCGAGATAAATTGACTCAAAGTTAGAAATTTCAGACAATTCTGAGCGAGTGCTGTTTTCTAGTAGGCAAATGGTTGTAGGAGCCGGCCAGGTTGAATAGGTTGGGAATAGGTGTGCGGTAGGGACGCAAAATATTGAGTCATAAAAGATTTAGAATGAAACAATTCAGCTATAAATTTTAATATTGAATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCACTTAAACCCTGTAATAGAAAG</pcr_primer_p1>
		<pcr_primer_p2>CGGTAGTTTTGTAACCTTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>322</pcr_amplicon_size>
		<canonical_amplicon>ATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCG</canonical_amplicon>
		<polymorphic_amplicon>ATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCYCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38451</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>79909</contig_pos>
        <strand></strand>
        <context>gcctggttta[C/G]tgtGAAAAGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTA</left_flank>
        <right_flank>TGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATGTGTGTGTGTTTTTTTTCAAATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCGTAGTCAGTCTTGCAGCATTCTCAAAACTGATGCTCGGTTTCAAGTCAATTTATCTCGGTTTCTTGGAGAGATATGAAAAAAAGGTATACTGACAAAAAGTTCATTATAATATCAAAAATATTTCGTTTGTTGAACGCTTTTTGATATTTCTCACACGAACCGAGATAAATTGACTCAAAGTTAGAAATTTCAGACAATTCTGAGCGAGTGCTGTTTTCTAGTAGGCAAATGGTTGTAGGAGCCGGCCAGGTTGAATAGGTTGGGAATAGGTGTGCGGTAGGGACGCAAAATATTGAGTCATAAAAGATTTAGAATGAAACAATTCAGCTATAAATTTTAATATTGAATAGTCGACTACTGTGCGGAAAC</canonical>
            <polymorphic>GTATGTGTGTGTGTTTTTTTTCAAATAATTTGGGAATGAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTASTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCGTAGTCAGTCTTGCAGCATTCTCAAAACTGATGCTCGGTTTCAAGTCAATTTATCTCGGTTTCTTGGAGAGATATGAAAAAAAGGTATACTGACAAAAAGTTCATTATAATATCAAAAATATTTCGTTTGTTGAACGCTTTTTGATATTTCTCACACGAACCGAGATAAATTGACTCAAAGTTAGAAATTTCAGACAATTCTGAGCGAGTGCTGTTTTCTAGTAGGCAAATGGTTGTAGGAGCCGGCCAGGTTGAATAGGTTGGGAATAGGTGTGCGGTAGGGACGCAAAATATTGAGTCATAAAAGATTTAGAATGAAACAATTCAGCTATAAATTTTAATATTGAATAGTCGACTACTGTGCGGAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>360 298 203 129 10</canonical_bands>
                <polymorphic_bands>427 360 203 10</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>375 266 220 77 45 17</canonical_bands>
                <polymorphic_bands>375 297 266 45 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCACTTAAACCCTGTAATAGAAAG</pcr_primer_p1>
		<pcr_primer_p2>CGGTAGTTTTGTAACCTTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>322</pcr_amplicon_size>
		<canonical_amplicon>ATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCG</canonical_amplicon>
		<polymorphic_amplicon>ATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTASTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38452</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>79946</contig_pos>
        <strand></strand>
        <context>AATTTGAAAT[G/T]TCATGATGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAAT</left_flank>
        <right_flank>TCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCGTAGTCAGTCTTGCAGCATTCTCAAAACTGATGCTCGGTTTCAAGTCAATTTATCTCGGTTTCTTGGAGAGATATGAAAAAAAGGTATACTGACAAAAAGTTCATTATAATATCAAAAATATTTCGTTTGTTGAACGCTTTTTGATATTTCTCACACGAACCGAGATAAATTGACTCAAAGTTAGAAATTTCAGACAATTCTGAGCGAGTGCTGTTTTCTAGTAGGCAAATGGTTGTAGGAGCCGGCCAGGTTGAATAGGTTGGGAATAGGTGTGCGGTAGGGACGCAAAATATTGAGTCATAAAAGATTTAGAATGAAACAATTCAGCTATAAATTTTAATATTGAATAGTCGACTACTGTGCGGAAACGGAAAAAGACAATTTTTTTTATTTTAAAAAATTCTAG</canonical>
            <polymorphic>GAAAACAAATTTCACACTTTTTGAAACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATKTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCGTAGTCAGTCTTGCAGCATTCTCAAAACTGATGCTCGGTTTCAAGTCAATTTATCTCGGTTTCTTGGAGAGATATGAAAAAAAGGTATACTGACAAAAAGTTCATTATAATATCAAAAATATTTCGTTTGTTGAACGCTTTTTGATATTTCTCACACGAACCGAGATAAATTGACTCAAAGTTAGAAATTTCAGACAATTCTGAGCGAGTGCTGTTTTCTAGTAGGCAAATGGTTGTAGGAGCCGGCCAGGTTGAATAGGTTGGGAATAGGTGTGCGGTAGGGACGCAAAATATTGAGTCATAAAAGATTTAGAATGAAACAATTCAGCTATAAATTTTAATATTGAATAGTCGACTACTGTGCGGAAACGGAAAAAGACAATTTTTTTTATTTTAAAAAATTCTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCACTTAAACCCTGTAATAGAAAG</pcr_primer_p1>
		<pcr_primer_p2>CGGTAGTTTTGTAACCTTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>322</pcr_amplicon_size>
		<canonical_amplicon>ATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCG</canonical_amplicon>
		<polymorphic_amplicon>ATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATKTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38453</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>79970</contig_pos>
        <strand></strand>
        <context>CAAGATAATT[G/T]TTTTTGTAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATT</left_flank>
        <right_flank>TTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCGTAGTCAGTCTTGCAGCATTCTCAAAACTGATGCTCGGTTTCAAGTCAATTTATCTCGGTTTCTTGGAGAGATATGAAAAAAAGGTATACTGACAAAAAGTTCATTATAATATCAAAAATATTTCGTTTGTTGAACGCTTTTTGATATTTCTCACACGAACCGAGATAAATTGACTCAAAGTTAGAAATTTCAGACAATTCTGAGCGAGTGCTGTTTTCTAGTAGGCAAATGGTTGTAGGAGCCGGCCAGGTTGAATAGGTTGGGAATAGGTGTGCGGTAGGGACGCAAAATATTGAGTCATAAAAGATTTAGAATGAAACAATTCAGCTATAAATTTTAATATTGAATAGTCGACTACTGTGCGGAAACGGAAAAAGACAATTTTTTTTATTTTAAAAAATTCTAGATTGAGAACATACTCCCAAAATGC</canonical>
            <polymorphic>AACATTGGGATGAAACTAAAGAGAGAGAGAAAAAAGAACAAGGATAAGAAGGATCAAAAAATGATATGAAGGAGTGGGGGCACCGCACCTAACCAATATGTTTGCACTCGACCTCCGTACAACCTGACAAAGATTGAACACTGTTGTCTCATGATATGTACAGGTGCATATGGACGAAACATTTATATGCTAACATTTATATGCCTATTGGTAGCAGGTGGTGGAAATAAAGGTAGTGGAAATATCTAATCACTTAAACCCTGTAATAGAAAGGCCCGTTGCTTGGCTCCAAGGCAAGATATTAAATACGTGTCAACTGATAAAATGTTGGTGGCATCATGATAAAAAAATTACCAGTTGACCTCATTTTGATAACTTTGATAGGAACCGAGATAAATTGACTCAAAGTTGAAGGTGTCTCTTCTGCTGCCTGGTTTACTGTGAAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTKTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCGTAGTCAGTCTTGCAGCATTCTCAAAACTGATGCTCGGTTTCAAGTCAATTTATCTCGGTTTCTTGGAGAGATATGAAAAAAAGGTATACTGACAAAAAGTTCATTATAATATCAAAAATATTTCGTTTGTTGAACGCTTTTTGATATTTCTCACACGAACCGAGATAAATTGACTCAAAGTTAGAAATTTCAGACAATTCTGAGCGAGTGCTGTTTTCTAGTAGGCAAATGGTTGTAGGAGCCGGCCAGGTTGAATAGGTTGGGAATAGGTGTGCGGTAGGGACGCAAAATATTGAGTCATAAAAGATTTAGAATGAAACAATTCAGCTATAAATTTTAATATTGAATAGTCGACTACTGTGCGGAAACGGAAAAAGACAATTTTTTTTATTTTAAAAAATTCTAGATTGAGAACATACTCCCAAAATGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGCTTTGCTTACTAGTTTGA</pcr_primer_p1>
		<pcr_primer_p2>CGAGCATCAGTTTTGAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>163</pcr_amplicon_size>
		<canonical_amplicon>AAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTGTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCGTAGTCAGTCTTGCAGCATTCTCAAAACTGATGCTCG</canonical_amplicon>
		<polymorphic_amplicon>AAAAGCTTTGCTTACTAGTTTGAATTTGAAATGTCATGATGTGTTGCAAGATAATTKTTTTTGTAATAAAAGCAAAAAAGAAAAAAAGTTTAAGAAACGTATAAAAAACAAGGTTACAAAACTACCGTAGTCAGTCTTGCAGCATTCTCAAAACTGATGCTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38454</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>93524</contig_pos>
        <strand>+</strand>
        <context>GTTCCAGGTG[A/C]GAGARCTACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGCTGAGATTCGATGGAGCATTGAATGTGGATTTGAATGAGTTCCAGGTG</left_flank>
        <right_flank>GAGAACTACAGTATGCATTTAGCCAGATCAAATGTCAAATTTTCCATACT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTCCAAGGTTTCCTTGTCTTCCACTCATTCGGAGGGGGAACAGGCTCAGGATTCAGTTCTCTTCTCATGGAAAGACTCTCCGTAGAGTTTGGGAAGAAAAGTAAATTGGAATTCAGGTTCGACGCTCTTGGCTCCCCTTCCAAGCCATAAATCCCAACTTTATAGCGTCTACCCGGCACCACAAGTCTCGACATCGGTCGTCGAGCCATACAACTCTATTCTCACCACGCACACTACTTTGGAGCTGTCCGACTGCTCGTTTATGGTTGACAACGAGGCGATTTACGACCTCTGCCGTCAAAAACTGCATGTTGAGGTTTGGAAGGGGGAGAAAAAGAACGAGATAAATTAGAAATGACATTGAAAAACGATGATCCTAATCTCAGAGACCGTCCTACTCAAACCTCAACCGACTAATCGCCCAAGTCGTTTCATCAATTACCGCGTCGCTGAGATTCGATGGAGCATTGAATGTGGATTTGAATGAGTTCCAGGTGAGAGAACTACAGTATGCATTTAGCCAGATCAAATGTCAAATTTTCCATACTAATTTGGTCCCATACCCTCGCATTCATTTCCCACTCGCCACCTATGCTCCAGTGATTTCTGCGGATAGAGTAACCCTACCGCCAAAAGTTTATGCTCTGAATTTTATTGTTTTAGGCTCATCATGAACCTCTATCAGTTCAAGACATCACCCATATGTGCTTCGAAAAAGCGAACCAAATGGTGAAATGTGACCCCAGTGCTGGGAAATACATGGTAATTCTAAAAAGAGACATTTTCTTCTGATCCTTAATATTTCAGGCTGTCTGCTTGCTGTATCGTGGAGACGTTGTCCCGAAAGATGTCAACGCGGCTATCTCGTCCGTCAAGGCAAAACGTGGAATTAACTTTGTTGACTGGTACTATTTTTTGTGCCCAGAATAGATAACAACTATACATTTTCAGGTGCCCAACTGGTTTCAAAGTGGGAATCAACTACCAAGCACCTGTTA</canonical>
            <polymorphic>GACTCCAAGGTTTCCTTGTCTTCCACTCATTCGGAGGGGGAACAGGCTCAGGATTCAGTTCTCTTCTCATGGAAAGACTCTCCGTAGAGTTTGGGAAGAAAAGTAAATTGGAATTCAGGTTCGACGCTCTTGGCTCCCCTTCCAAGCCATAAATCCCAACTTTATAGCGTCTACCCGGCACCACAAGTCTCGACATCGGTCGTCGAGCCATACAACTCTATTCTCACCACGCACACTACTTTGGAGCTGTCCGACTGCTCGTTTATGGTTGACAACGAGGCGATTTACGACCTCTGCCGTCAAAAACTGCATGTTGAGGTTTGGAAGGGGGAGAAAAAGAACGAGATAAATTAGAAATGACATTGAAAAACGATGATCCTAATCTCAGAGACCGTCCTACTCAAACCTCAACCGACTAATCGCCCAAGTCGTTTCATCAATTACCGCGTCGCTGAGATTCGATGGAGCATTGAATGTGGATTTGAATGAGTTCCAGGTGMGAGAACTACAGTATGCATTTAGCCAGATCAAATGTCAAATTTTCCATACTAATTTGGTCCCATACCCTCGCATTCATTTCCCACTCGCCACCTATGCTCCAGTGATTTCTGCGGATAGAGTAACCCTACCGCCAAAAGTTTATGCTCTGAATTTTATTGTTTTAGGCTCATCATGAACCTCTATCAGTTCAAGACATCACCCATATGTGCTTCGAAAAAGCGAACCAAATGGTGAAATGTGACCCCAGTGCTGGGAAATACATGGTAATTCTAAAAAGAGACATTTTCTTCTGATCCTTAATATTTCAGGCTGTCTGCTTGCTGTATCGTGGAGACGTTGTCCCGAAAGATGTCAACGCGGCTATCTCGTCCGTCAAGGCAAAACGTGGAATTAACTTTGTTGACTGGTACTATTTTTTGTGCCCAGAATAGATAACAACTATACATTTTCAGGTGCCCAACTGGTTTCAAAGTGGGAATCAACTACCAAGCACCTGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGTCGTTTCATCAATTACC</pcr_primer_p1>
		<pcr_primer_p2>ATGATGAGCCTAAAACAATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAGTCGTTTCATCAATTACCGCGTCGCTGAGATTCGATGGAGCATTGAATGTGGATTTGAATGAGTTCCAGGTGAGAGAACTACAGTATGCATTTAGCCAGATCAAATGTCAAATTTTCCATACTAATTTGGTCCCATACCCTCGCATTCATTTCCCACTCGCCACCTATGCTCCAGTGATTTCTGCGGATAGAGTAACCCTACCGCCAAAAGTTTATGCTCTGAATTTTATTGTTTTAGGCTCATCAT</canonical_amplicon>
		<polymorphic_amplicon>CAAGTCGTTTCATCAATTACCGCGTCGCTGAGATTCGATGGAGCATTGAATGTGGATTTGAATGAGTTCCAGGTGMGAGAACTACAGTATGCATTTAGCCAGATCAAATGTCAAATTTTCCATACTAATTTGGTCCCATACCCTCGCATTCATTTCCCACTCGCCACCTATGCTCCAGTGATTTCTGCGGATAGAGTAACCCTACCGCCAAAAGTTTATGCTCTGAATTTTATTGTTTTAGGCTCATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38455</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>93529</contig_pos>
        <strand>+</strand>
        <context>AGGTGMGAGA[A/G]CTACAGTATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGATTCGATGGAGCATTGAATGTGGATTTGAATGAGTTCCAGGTGAGAGA</left_flank>
        <right_flank>CTACAGTATGCATTTAGCCAGATCAAATGTCAAATTTTCCATACTAATTT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGGTTTCCTTGTCTTCCACTCATTCGGAGGGGGAACAGGCTCAGGATTCAGTTCTCTTCTCATGGAAAGACTCTCCGTAGAGTTTGGGAAGAAAAGTAAATTGGAATTCAGGTTCGACGCTCTTGGCTCCCCTTCCAAGCCATAAATCCCAACTTTATAGCGTCTACCCGGCACCACAAGTCTCGACATCGGTCGTCGAGCCATACAACTCTATTCTCACCACGCACACTACTTTGGAGCTGTCCGACTGCTCGTTTATGGTTGACAACGAGGCGATTTACGACCTCTGCCGTCAAAAACTGCATGTTGAGGTTTGGAAGGGGGAGAAAAAGAACGAGATAAATTAGAAATGACATTGAAAAACGATGATCCTAATCTCAGAGACCGTCCTACTCAAACCTCAACCGACTAATCGCCCAAGTCGTTTCATCAATTACCGCGTCGCTGAGATTCGATGGAGCATTGAATGTGGATTTGAATGAGTTCCAGGTGAGAGAACTACAGTATGCATTTAGCCAGATCAAATGTCAAATTTTCCATACTAATTTGGTCCCATACCCTCGCATTCATTTCCCACTCGCCACCTATGCTCCAGTGATTTCTGCGGATAGAGTAACCCTACCGCCAAAAGTTTATGCTCTGAATTTTATTGTTTTAGGCTCATCATGAACCTCTATCAGTTCAAGACATCACCCATATGTGCTTCGAAAAAGCGAACCAAATGGTGAAATGTGACCCCAGTGCTGGGAAATACATGGTAATTCTAAAAAGAGACATTTTCTTCTGATCCTTAATATTTCAGGCTGTCTGCTTGCTGTATCGTGGAGACGTTGTCCCGAAAGATGTCAACGCGGCTATCTCGTCCGTCAAGGCAAAACGTGGAATTAACTTTGTTGACTGGTACTATTTTTTGTGCCCAGAATAGATAACAACTATACATTTTCAGGTGCCCAACTGGTTTCAAAGTGGGAATCAACTACCAAGCACCTGTTACGGTG</canonical>
            <polymorphic>CAAGGTTTCCTTGTCTTCCACTCATTCGGAGGGGGAACAGGCTCAGGATTCAGTTCTCTTCTCATGGAAAGACTCTCCGTAGAGTTTGGGAAGAAAAGTAAATTGGAATTCAGGTTCGACGCTCTTGGCTCCCCTTCCAAGCCATAAATCCCAACTTTATAGCGTCTACCCGGCACCACAAGTCTCGACATCGGTCGTCGAGCCATACAACTCTATTCTCACCACGCACACTACTTTGGAGCTGTCCGACTGCTCGTTTATGGTTGACAACGAGGCGATTTACGACCTCTGCCGTCAAAAACTGCATGTTGAGGTTTGGAAGGGGGAGAAAAAGAACGAGATAAATTAGAAATGACATTGAAAAACGATGATCCTAATCTCAGAGACCGTCCTACTCAAACCTCAACCGACTAATCGCCCAAGTCGTTTCATCAATTACCGCGTCGCTGAGATTCGATGGAGCATTGAATGTGGATTTGAATGAGTTCCAGGTGAGAGARCTACAGTATGCATTTAGCCAGATCAAATGTCAAATTTTCCATACTAATTTGGTCCCATACCCTCGCATTCATTTCCCACTCGCCACCTATGCTCCAGTGATTTCTGCGGATAGAGTAACCCTACCGCCAAAAGTTTATGCTCTGAATTTTATTGTTTTAGGCTCATCATGAACCTCTATCAGTTCAAGACATCACCCATATGTGCTTCGAAAAAGCGAACCAAATGGTGAAATGTGACCCCAGTGCTGGGAAATACATGGTAATTCTAAAAAGAGACATTTTCTTCTGATCCTTAATATTTCAGGCTGTCTGCTTGCTGTATCGTGGAGACGTTGTCCCGAAAGATGTCAACGCGGCTATCTCGTCCGTCAAGGCAAAACGTGGAATTAACTTTGTTGACTGGTACTATTTTTTGTGCCCAGAATAGATAACAACTATACATTTTCAGGTGCCCAACTGGTTTCAAAGTGGGAATCAACTACCAAGCACCTGTTACGGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGTCGTTTCATCAATTACC</pcr_primer_p1>
		<pcr_primer_p2>ATGATGAGCCTAAAACAATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAGTCGTTTCATCAATTACCGCGTCGCTGAGATTCGATGGAGCATTGAATGTGGATTTGAATGAGTTCCAGGTGAGAGAACTACAGTATGCATTTAGCCAGATCAAATGTCAAATTTTCCATACTAATTTGGTCCCATACCCTCGCATTCATTTCCCACTCGCCACCTATGCTCCAGTGATTTCTGCGGATAGAGTAACCCTACCGCCAAAAGTTTATGCTCTGAATTTTATTGTTTTAGGCTCATCAT</canonical_amplicon>
		<polymorphic_amplicon>CAAGTCGTTTCATCAATTACCGCGTCGCTGAGATTCGATGGAGCATTGAATGTGGATTTGAATGAGTTCCAGGTGAGAGARCTACAGTATGCATTTAGCCAGATCAAATGTCAAATTTTCCATACTAATTTGGTCCCATACCCTCGCATTCATTTCCCACTCGCCACCTATGCTCCAGTGATTTCTGCGGATAGAGTAACCCTACCGCCAAAAGTTTATGCTCTGAATTTTATTGTTTTAGGCTCATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38456</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>93571</contig_pos>
        <strand>+</strand>
        <context>AAATTTTCCA[G/T]ACTAATTTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGAGAGAACTACAGTATGCATTTAGCCAGATCAAATGTCAAATTTTCCA</left_flank>
        <right_flank>ACTAATTTGGTCCCATACCCTCGCATTCATTTCCCACTCGCCACCTATGC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGGATTCAGTTCTCTTCTCATGGAAAGACTCTCCGTAGAGTTTGGGAAGAAAAGTAAATTGGAATTCAGGTTCGACGCTCTTGGCTCCCCTTCCAAGCCATAAATCCCAACTTTATAGCGTCTACCCGGCACCACAAGTCTCGACATCGGTCGTCGAGCCATACAACTCTATTCTCACCACGCACACTACTTTGGAGCTGTCCGACTGCTCGTTTATGGTTGACAACGAGGCGATTTACGACCTCTGCCGTCAAAAACTGCATGTTGAGGTTTGGAAGGGGGAGAAAAAGAACGAGATAAATTAGAAATGACATTGAAAAACGATGATCCTAATCTCAGAGACCGTCCTACTCAAACCTCAACCGACTAATCGCCCAAGTCGTTTCATCAATTACCGCGTCGCTGAGATTCGATGGAGCATTGAATGTGGATTTGAATGAGTTCCAGGTGAGAGAACTACAGTATGCATTTAGCCAGATCAAATGTCAAATTTTCCATACTAATTTGGTCCCATACCCTCGCATTCATTTCCCACTCGCCACCTATGCTCCAGTGATTTCTGCGGATAGAGTAACCCTACCGCCAAAAGTTTATGCTCTGAATTTTATTGTTTTAGGCTCATCATGAACCTCTATCAGTTCAAGACATCACCCATATGTGCTTCGAAAAAGCGAACCAAATGGTGAAATGTGACCCCAGTGCTGGGAAATACATGGTAATTCTAAAAAGAGACATTTTCTTCTGATCCTTAATATTTCAGGCTGTCTGCTTGCTGTATCGTGGAGACGTTGTCCCGAAAGATGTCAACGCGGCTATCTCGTCCGTCAAGGCAAAACGTGGAATTAACTTTGTTGACTGGTACTATTTTTTGTGCCCAGAATAGATAACAACTATACATTTTCAGGTGCCCAACTGGTTTCAAAGTGGGAATCAACTACCAAGCACCTGTTACGGTGGAGGGAGGAGATTTGGCAAAGGTACAAAGTCTCTTATCCTTT</canonical>
            <polymorphic>TCAGGATTCAGTTCTCTTCTCATGGAAAGACTCTCCGTAGAGTTTGGGAAGAAAAGTAAATTGGAATTCAGGTTCGACGCTCTTGGCTCCCCTTCCAAGCCATAAATCCCAACTTTATAGCGTCTACCCGGCACCACAAGTCTCGACATCGGTCGTCGAGCCATACAACTCTATTCTCACCACGCACACTACTTTGGAGCTGTCCGACTGCTCGTTTATGGTTGACAACGAGGCGATTTACGACCTCTGCCGTCAAAAACTGCATGTTGAGGTTTGGAAGGGGGAGAAAAAGAACGAGATAAATTAGAAATGACATTGAAAAACGATGATCCTAATCTCAGAGACCGTCCTACTCAAACCTCAACCGACTAATCGCCCAAGTCGTTTCATCAATTACCGCGTCGCTGAGATTCGATGGAGCATTGAATGTGGATTTGAATGAGTTCCAGGTGAGAGAACTACAGTATGCATTTAGCCAGATCAAATGTCAAATTTTCCAKACTAATTTGGTCCCATACCCTCGCATTCATTTCCCACTCGCCACCTATGCTCCAGTGATTTCTGCGGATAGAGTAACCCTACCGCCAAAAGTTTATGCTCTGAATTTTATTGTTTTAGGCTCATCATGAACCTCTATCAGTTCAAGACATCACCCATATGTGCTTCGAAAAAGCGAACCAAATGGTGAAATGTGACCCCAGTGCTGGGAAATACATGGTAATTCTAAAAAGAGACATTTTCTTCTGATCCTTAATATTTCAGGCTGTCTGCTTGCTGTATCGTGGAGACGTTGTCCCGAAAGATGTCAACGCGGCTATCTCGTCCGTCAAGGCAAAACGTGGAATTAACTTTGTTGACTGGTACTATTTTTTGTGCCCAGAATAGATAACAACTATACATTTTCAGGTGCCCAACTGGTTTCAAAGTGGGAATCAACTACCAAGCACCTGTTACGGTGGAGGGAGGAGATTTGGCAAAGGTACAAAGTCTCTTATCCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGTCGTTTCATCAATTACC</pcr_primer_p1>
		<pcr_primer_p2>ATGATGAGCCTAAAACAATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAGTCGTTTCATCAATTACCGCGTCGCTGAGATTCGATGGAGCATTGAATGTGGATTTGAATGAGTTCCAGGTGAGAGAACTACAGTATGCATTTAGCCAGATCAAATGTCAAATTTTCCATACTAATTTGGTCCCATACCCTCGCATTCATTTCCCACTCGCCACCTATGCTCCAGTGATTTCTGCGGATAGAGTAACCCTACCGCCAAAAGTTTATGCTCTGAATTTTATTGTTTTAGGCTCATCAT</canonical_amplicon>
		<polymorphic_amplicon>CAAGTCGTTTCATCAATTACCGCGTCGCTGAGATTCGATGGAGCATTGAATGTGGATTTGAATGAGTTCCAGGTGAGAGAACTACAGTATGCATTTAGCCAGATCAAATGTCAAATTTTCCAKACTAATTTGGTCCCATACCCTCGCATTCATTTCCCACTCGCCACCTATGCTCCAGTGATTTCTGCGGATAGAGTAACCCTACCGCCAAAAGTTTATGCTCTGAATTTTATTGTTTTAGGCTCATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38457</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>93664</contig_pos>
        <strand>+</strand>
        <context>CGCCAAAAGT[C/T]TATGCTCTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCTATGCTCCAGTGATTTCTGCGGATAGAGTAACCCTACCGCCAAAAGT</left_flank>
        <right_flank>TATGCTCTGAATTTTATTGTTTTAGGCTCATCATGAACCTCTATCAGTTC</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAAGCCATAAATCCCAACTTTATAGCGTCTACCCGGCACCACAAGTCTCGACATCGGTCGTCGAGCCATACAACTCTATTCTCACCACGCACACTACTTTGGAGCTGTCCGACTGCTCGTTTATGGTTGACAACGAGGCGATTTACGACCTCTGCCGTCAAAAACTGCATGTTGAGGTTTGGAAGGGGGAGAAAAAGAACGAGATAAATTAGAAATGACATTGAAAAACGATGATCCTAATCTCAGAGACCGTCCTACTCAAACCTCAACCGACTAATCGCCCAAGTCGTTTCATCAATTACCGCGTCGCTGAGATTCGATGGAGCATTGAATGTGGATTTGAATGAGTTCCAGGTGAGAGAACTACAGTATGCATTTAGCCAGATCAAATGTCAAATTTTCCATACTAATTTGGTCCCATACCCTCGCATTCATTTCCCACTCGCCACCTATGCTCCAGTGATTTCTGCGGATAGAGTAACCCTACCGCCAAAAGTTTATGCTCTGAATTTTATTGTTTTAGGCTCATCATGAACCTCTATCAGTTCAAGACATCACCCATATGTGCTTCGAAAAAGCGAACCAAATGGTGAAATGTGACCCCAGTGCTGGGAAATACATGGTAATTCTAAAAAGAGACATTTTCTTCTGATCCTTAATATTTCAGGCTGTCTGCTTGCTGTATCGTGGAGACGTTGTCCCGAAAGATGTCAACGCGGCTATCTCGTCCGTCAAGGCAAAACGTGGAATTAACTTTGTTGACTGGTACTATTTTTTGTGCCCAGAATAGATAACAACTATACATTTTCAGGTGCCCAACTGGTTTCAAAGTGGGAATCAACTACCAAGCACCTGTTACGGTGGAGGGAGGAGATTTGGCAAAGGTACAAAGTCTCTTATCCTTTTTTTTCTTCGAATATAGAATTTTCAGGTCCACCGCGCGGTGTGCATGCTCTCCAACACCACCGCCATCGCCGAAGCGTGGGCTCGTCTCGACC</canonical>
            <polymorphic>TCCAAGCCATAAATCCCAACTTTATAGCGTCTACCCGGCACCACAAGTCTCGACATCGGTCGTCGAGCCATACAACTCTATTCTCACCACGCACACTACTTTGGAGCTGTCCGACTGCTCGTTTATGGTTGACAACGAGGCGATTTACGACCTCTGCCGTCAAAAACTGCATGTTGAGGTTTGGAAGGGGGAGAAAAAGAACGAGATAAATTAGAAATGACATTGAAAAACGATGATCCTAATCTCAGAGACCGTCCTACTCAAACCTCAACCGACTAATCGCCCAAGTCGTTTCATCAATTACCGCGTCGCTGAGATTCGATGGAGCATTGAATGTGGATTTGAATGAGTTCCAGGTGAGAGAACTACAGTATGCATTTAGCCAGATCAAATGTCAAATTTTCCATACTAATTTGGTCCCATACCCTCGCATTCATTTCCCACTCGCCACCTATGCTCCAGTGATTTCTGCGGATAGAGTAACCCTACCGCCAAAAGTYTATGCTCTGAATTTTATTGTTTTAGGCTCATCATGAACCTCTATCAGTTCAAGACATCACCCATATGTGCTTCGAAAAAGCGAACCAAATGGTGAAATGTGACCCCAGTGCTGGGAAATACATGGTAATTCTAAAAAGAGACATTTTCTTCTGATCCTTAATATTTCAGGCTGTCTGCTTGCTGTATCGTGGAGACGTTGTCCCGAAAGATGTCAACGCGGCTATCTCGTCCGTCAAGGCAAAACGTGGAATTAACTTTGTTGACTGGTACTATTTTTTGTGCCCAGAATAGATAACAACTATACATTTTCAGGTGCCCAACTGGTTTCAAAGTGGGAATCAACTACCAAGCACCTGTTACGGTGGAGGGAGGAGATTTGGCAAAGGTACAAAGTCTCTTATCCTTTTTTTTCTTCGAATATAGAATTTTCAGGTCCACCGCGCGGTGTGCATGCTCTCCAACACCACCGCCATCGCCGAAGCGTGGGCTCGTCTCGACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGAATGTGGATTTGAATGA</pcr_primer_p1>
		<pcr_primer_p2>GGTGATGTCTTGAACTGATAGAG</pcr_primer_p2>
		<pcr_amplicon_size>233</pcr_amplicon_size>
		<canonical_amplicon>ATTGAATGTGGATTTGAATGAGTTCCAGGTGAGAGAACTACAGTATGCATTTAGCCAGATCAAATGTCAAATTTTCCATACTAATTTGGTCCCATACCCTCGCATTCATTTCCCACTCGCCACCTATGCTCCAGTGATTTCTGCGGATAGAGTAACCCTACCGCCAAAAGTTTATGCTCTGAATTTTATTGTTTTAGGCTCATCATGAACCTCTATCAGTTCAAGACATCACC</canonical_amplicon>
		<polymorphic_amplicon>ATTGAATGTGGATTTGAATGAGTTCCAGGTGAGAGAACTACAGTATGCATTTAGCCAGATCAAATGTCAAATTTTCCATACTAATTTGGTCCCATACCCTCGCATTCATTTCCCACTCGCCACCTATGCTCCAGTGATTTCTGCGGATAGAGTAACCCTACCGCCAAAAGTYTATGCTCTGAATTTTATTGTTTTAGGCTCATCATGAACCTCTATCAGTTCAAGACATCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38458</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>120277</contig_pos>
        <strand></strand>
        <context>TAAAACGAAA[A/C]AAATGGACGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTTCAGCCACAAATGCGCTAAATGAACTTTGATTGGGCTAAAACGAAA</left_flank>
        <right_flank>AAATGGACGAACAACATTTGGATCTTGGGTTATTTTCACTACCACATGTT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCATACTAAATATTCGAAAACTTGAATAATTCACTTTTCTGAAACATGACCTCGTTGAAGCTGGTTTTCTGTCGCTTAGAAAAGTTTTTGAGCGTTTTTGTTAAGATTTTCAGAATCAGGACTGGCATTTATAGAATTCTGGACATTTGAAATGGATAGTGTAGATGACGGAGCACATAACTTCTAGCTGAGAACTGTCTTGCGGCCTAATTCCTATGCGAGCTGTGTGGAGAGCATGACAAAAAAGTTGAACACATTTGAGAGTGAAAGTGGACAAGGGTTTTGGGATTCCATAATAAATAGATCAGCTCCAACTTTTGCATTTTCCGCAAACACCGTCTTGCGCGAATCTCTCAGGACAGTGAGCTCGTTGTTGTGGGTCATATCTTTCAGACAAGATAACAACAACTGAATTCGTACAAAAATGTACTTATAATTGCACTGCGTCAATTTTCAGCCACAAATGCGCTAAATGAACTTTGATTGGGCTAAAACGAAAAAAATGGACGAACAACATTTGGATCTTGGGTTATTTTCACTACCACATGTTATGATAACGCGGATTTATCTTTTTTATTCAATATAAAGTCGATTCAAAACTGATTGAATGATAAAAACTTGTGCTGACAAAAAACACATTTGAACGTCGCGCTATGTTATTGTGTTATTGGGGCACACTTGCTGCATGAACTTCTTTTCCAAAAAGCCACGTTTCACTGATTTCTTGAGCTTCTCGCAATTTGCAAAGCTGACGAATATAAGATTTTTAATTACCGGAAGATGGAGATGCCTCCAGAGAGGGCAACCAAGCAGAGGGATCGCCAAAAAACATGACATTTCTTCCTGAAAGTCACTATAATTTATTCCGAACTGCAAACATCTGTCCAGTGACTCACTGCTCCCCATGCTTTCCTCAAAACGTTTCATCGATTTTTAAATCATTTTTACGGTTTCTTTCTTGTTTCTTTATCTTTCCTTTTGAATAATTCTTACATTTTAC</canonical>
            <polymorphic>CCATACTAAATATTCGAAAACTTGAATAATTCACTTTTCTGAAACATGACCTCGTTGAAGCTGGTTTTCTGTCGCTTAGAAAAGTTTTTGAGCGTTTTTGTTAAGATTTTCAGAATCAGGACTGGCATTTATAGAATTCTGGACATTTGAAATGGATAGTGTAGATGACGGAGCACATAACTTCTAGCTGAGAACTGTCTTGCGGCCTAATTCCTATGCGAGCTGTGTGGAGAGCATGACAAAAAAGTTGAACACATTTGAGAGTGAAAGTGGACAAGGGTTTTGGGATTCCATAATAAATAGATCAGCTCCAACTTTTGCATTTTCCGCAAACACCGTCTTGCGCGAATCTCTCAGGACAGTGAGCTCGTTGTTGTGGGTCATATCTTTCAGACAAGATAACAACAACTGAATTCGTACAAAAATGTACTTATAATTGCACTGCGTCAATTTTCAGCCACAAATGCGCTAAATGAACTTTGATTGGGCTAAAACGAAAMAAATGGACGAACAACATTTGGATCTTGGGTTATTTTCACTACCACATGTTATGATAACGCGGATTTATCTTTTTTATTCAATATAAAGTCGATTCAAAACTGATTGAATGATAAAAACTTGTGCTGACAAAAAACACATTTGAACGTCGCGCTATGTTATTGTGTTATTGGGGCACACTTGCTGCATGAACTTCTTTTCCAAAAAGCCACGTTTCACTGATTTCTTGAGCTTCTCGCAATTTGCAAAGCTGACGAATATAAGATTTTTAATTACCGGAAGATGGAGATGCCTCCAGAGAGGGCAACCAAGCAGAGGGATCGCCAAAAAACATGACATTTCTTCCTGAAAGTCACTATAATTTATTCCGAACTGCAAACATCTGTCCAGTGACTCACTGCTCCCCATGCTTTCCTCAAAACGTTTCATCGATTTTTAAATCATTTTTACGGTTTCTTTCTTGTTTCTTTATCTTTCCTTTTGAATAATTCTTACATTTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTCAGACAAGATAACAACAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGTCAGCACAAGTTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTTTCAGACAAGATAACAACAACTGAATTCGTACAAAAATGTACTTATAATTGCACTGCGTCAATTTTCAGCCACAAATGCGCTAAATGAACTTTGATTGGGCTAAAACGAAAAAAATGGACGAACAACATTTGGATCTTGGGTTATTTTCACTACCACATGTTATGATAACGCGGATTTATCTTTTTTATTCAATATAAAGTCGATTCAAAACTGATTGAATGATAAAAACTTGTGCTGACAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTTCAGACAAGATAACAACAACTGAATTCGTACAAAAATGTACTTATAATTGCACTGCGTCAATTTTCAGCCACAAATGCGCTAAATGAACTTTGATTGGGCTAAAACGAAAMAAATGGACGAACAACATTTGGATCTTGGGTTATTTTCACTACCACATGTTATGATAACGCGGATTTATCTTTTTTATTCAATATAAAGTCGATTCAAAACTGATTGAATGATAAAAACTTGTGCTGACAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38459</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>125434</contig_pos>
        <strand></strand>
        <context>tcgtggtcca[C/A]aacatgttgc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCA</left_flank>
        <right_flank>AACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGTTGACTGTTTTCAAGTTTAAAACCAACTCTCTTACATTCTTATACTTTACTTTTTTGCTCTACCTCCAATGTTCTAACTTAATCACAATTAGCTTTTCCAGACAACAAAACCACCGAAAACATGGATTCCGATAATGATGATGTTCAGCTGAACGACTCGACAAAGAAAGGAAAATTTCCGACAAAGGAAGATCGAGAGGTGGAGATAGTAGGAAGATTCCTCAAGAAGAAAGAGCCTCATTTGGAAGGATTCGTTTGTTACCTTAGAAACTGCTCATTCGGTAGGGCCACGACACACCTATTATTACACGATTTCGATACAAATTCACTGCCTCATGGTAAACATATTAGTTAGAATTTCCCGTGGAGGATGGTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTTTCACGATAAAAGTGTCCATAAAAAAAGTTTTTTTCACAAAAAAAAATTGAAAAAATGTCTGAAATTTCAAAAAAAATTCAATTTTGGAAAACCCGGGCCCAGGCCAAGGAGTCACGGGCCCTGGCCTTTAACATAATCGATGAAAACAATGGACTGAAGGAATACTTCGAGTCGCGGTCAGCTGGCT</canonical>
            <polymorphic>TGTGTTGACTGTTTTCAAGTTTAAAACCAACTCTCTTACATTCTTATACTTTACTTTTTTGCTCTACCTCCAATGTTCTAACTTAATCACAATTAGCTTTTCCAGACAACAAAACCACCGAAAACATGGATTCCGATAATGATGATGTTCAGCTGAACGACTCGACAAAGAAAGGAAAATTTCCGACAAAGGAAGATCGAGAGGTGGAGATAGTAGGAAGATTCCTCAAGAAGAAAGAGCCTCATTTGGAAGGATTCGTTTGTTACCTTAGAAACTGCTCATTCGGTAGGGCCACGACACACCTATTATTACACGATTTCGATACAAATTCACTGCCTCATGGTAAACATATTAGTTAGAATTTCCCGTGGAGGATGGTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCAMAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTTTCACGATAAAAGTGTCCATAAAAAAAGTTTTTTTCACAAAAAAAAATTGAAAAAATGTCTGAAATTTCAAAAAAAATTCAATTTTGGAAAACCCGGGCCCAGGCCAAGGAGTCACGGGCCCTGGCCTTTAACATAATCGATGAAAACAATGGACTGAAGGAATACTTCGAGTCGCGGTCAGCTGGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>133 98 89 88 85 78 75 73 38 35 31 28 22 21 19 18 17 12 11 8 5 5 5 4 2</canonical_bands>
                <polymorphic_bands>133 98 89 88 85 78 75 73 38 36 35 28 22 21 19 18 17 12 11 8 5 5 4 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>404 339 117 99 35 6</canonical_bands>
                <polymorphic_bands>404 339 216 35 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCAACCTTGATATCCTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGTTGTTACTTGACAGAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>436</pcr_amplicon_size>
		<canonical_amplicon>GTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTT</canonical_amplicon>
		<polymorphic_amplicon>GTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCAMAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38460</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>125501</contig_pos>
        <strand></strand>
        <context>tcgaatagaa[T/G]yattcatttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAA</left_flank>
        <right_flank>TATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCAATGTTCTAACTTAATCACAATTAGCTTTTCCAGACAACAAAACCACCGAAAACATGGATTCCGATAATGATGATGTTCAGCTGAACGACTCGACAAAGAAAGGAAAATTTCCGACAAAGGAAGATCGAGAGGTGGAGATAGTAGGAAGATTCCTCAAGAAGAAAGAGCCTCATTTGGAAGGATTCGTTTGTTACCTTAGAAACTGCTCATTCGGTAGGGCCACGACACACCTATTATTACACGATTTCGATACAAATTCACTGCCTCATGGTAAACATATTAGTTAGAATTTCCCGTGGAGGATGGTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTTTCACGATAAAAGTGTCCATAAAAAAAGTTTTTTTCACAAAAAAAAATTGAAAAAATGTCTGAAATTTCAAAAAAAATTCAATTTTGGAAAACCCGGGCCCAGGCCAAGGAGTCACGGGCCCTGGCCTTTAACATAATCGATGAAAACAATGGACTGAAGGAATACTTCGAGTCGCGGTCAGCTGGCTTTTGGAGAAATGGTATCCACAAGTTACCTGAATGTTGTCAGCATGTCGTGGACCACGATGGCGCAGA</canonical>
            <polymorphic>CTCCAATGTTCTAACTTAATCACAATTAGCTTTTCCAGACAACAAAACCACCGAAAACATGGATTCCGATAATGATGATGTTCAGCTGAACGACTCGACAAAGAAAGGAAAATTTCCGACAAAGGAAGATCGAGAGGTGGAGATAGTAGGAAGATTCCTCAAGAAGAAAGAGCCTCATTTGGAAGGATTCGTTTGTTACCTTAGAAACTGCTCATTCGGTAGGGCCACGACACACCTATTATTACACGATTTCGATACAAATTCACTGCCTCATGGTAAACATATTAGTTAGAATTTCCCGTGGAGGATGGTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAAKTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTTTCACGATAAAAGTGTCCATAAAAAAAGTTTTTTTCACAAAAAAAAATTGAAAAAATGTCTGAAATTTCAAAAAAAATTCAATTTTGGAAAACCCGGGCCCAGGCCAAGGAGTCACGGGCCCTGGCCTTTAACATAATCGATGAAAACAATGGACTGAAGGAATACTTCGAGTCGCGGTCAGCTGGCTTTTGGAGAAATGGTATCCACAAGTTACCTGAATGTTGTCAGCATGTCGTGGACCACGATGGCGCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>252 175 149 117 88 87 41 33 23 18 12 5</canonical_bands>
                <polymorphic_bands>252 175 158 149 88 87 33 23 18 12 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCAACCTTGATATCCTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGTTGTTACTTGACAGAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>436</pcr_amplicon_size>
		<canonical_amplicon>GTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTT</canonical_amplicon>
		<polymorphic_amplicon>GTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAAKTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38461</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>125502</contig_pos>
        <strand></strand>
        <context>cgaatagaak[T/C]attcattttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAAT</left_flank>
        <right_flank>ATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAATGTTCTAACTTAATCACAATTAGCTTTTCCAGACAACAAAACCACCGAAAACATGGATTCCGATAATGATGATGTTCAGCTGAACGACTCGACAAAGAAAGGAAAATTTCCGACAAAGGAAGATCGAGAGGTGGAGATAGTAGGAAGATTCCTCAAGAAGAAAGAGCCTCATTTGGAAGGATTCGTTTGTTACCTTAGAAACTGCTCATTCGGTAGGGCCACGACACACCTATTATTACACGATTTCGATACAAATTCACTGCCTCATGGTAAACATATTAGTTAGAATTTCCCGTGGAGGATGGTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTTTCACGATAAAAGTGTCCATAAAAAAAGTTTTTTTCACAAAAAAAAATTGAAAAAATGTCTGAAATTTCAAAAAAAATTCAATTTTGGAAAACCCGGGCCCAGGCCAAGGAGTCACGGGCCCTGGCCTTTAACATAATCGATGAAAACAATGGACTGAAGGAATACTTCGAGTCGCGGTCAGCTGGCTTTTGGAGAAATGGTATCCACAAGTTACCTGAATGTTGTCAGCATGTCGTGGACCACGATGGCGCAGAC</canonical>
            <polymorphic>TCCAATGTTCTAACTTAATCACAATTAGCTTTTCCAGACAACAAAACCACCGAAAACATGGATTCCGATAATGATGATGTTCAGCTGAACGACTCGACAAAGAAAGGAAAATTTCCGACAAAGGAAGATCGAGAGGTGGAGATAGTAGGAAGATTCCTCAAGAAGAAAGAGCCTCATTTGGAAGGATTCGTTTGTTACCTTAGAAACTGCTCATTCGGTAGGGCCACGACACACCTATTATTACACGATTTCGATACAAATTCACTGCCTCATGGTAAACATATTAGTTAGAATTTCCCGTGGAGGATGGTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATYATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTTTCACGATAAAAGTGTCCATAAAAAAAGTTTTTTTCACAAAAAAAAATTGAAAAAATGTCTGAAATTTCAAAAAAAATTCAATTTTGGAAAACCCGGGCCCAGGCCAAGGAGTCACGGGCCCTGGCCTTTAACATAATCGATGAAAACAATGGACTGAAGGAATACTTCGAGTCGCGGTCAGCTGGCTTTTGGAGAAATGGTATCCACAAGTTACCTGAATGTTGTCAGCATGTCGTGGACCACGATGGCGCAGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>252 176 149 117 88 87 41 33 22 18 12 5</canonical_bands>
                <polymorphic_bands>252 176 158 149 88 87 33 22 18 12 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCAACCTTGATATCCTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGTTGTTACTTGACAGAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>436</pcr_amplicon_size>
		<canonical_amplicon>GTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTT</canonical_amplicon>
		<polymorphic_amplicon>GTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATYATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38462</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>125535</contig_pos>
        <strand></strand>
        <context>ctcgtcaaca[T/G]tgtgaatttc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACA</left_flank>
        <right_flank>TGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGACAACAAAACCACCGAAAACATGGATTCCGATAATGATGATGTTCAGCTGAACGACTCGACAAAGAAAGGAAAATTTCCGACAAAGGAAGATCGAGAGGTGGAGATAGTAGGAAGATTCCTCAAGAAGAAAGAGCCTCATTTGGAAGGATTCGTTTGTTACCTTAGAAACTGCTCATTCGGTAGGGCCACGACACACCTATTATTACACGATTTCGATACAAATTCACTGCCTCATGGTAAACATATTAGTTAGAATTTCCCGTGGAGGATGGTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTTTCACGATAAAAGTGTCCATAAAAAAAGTTTTTTTCACAAAAAAAAATTGAAAAAATGTCTGAAATTTCAAAAAAAATTCAATTTTGGAAAACCCGGGCCCAGGCCAAGGAGTCACGGGCCCTGGCCTTTAACATAATCGATGAAAACAATGGACTGAAGGAATACTTCGAGTCGCGGTCAGCTGGCTTTTGGAGAAATGGTATCCACAAGTTACCTGAATGTTGTCAGCATGTCGTGGACCACGATGGCGCAGACGGTCCATCTCGGATAATTCATGTTTTTGTGTTA</canonical>
            <polymorphic>CCAGACAACAAAACCACCGAAAACATGGATTCCGATAATGATGATGTTCAGCTGAACGACTCGACAAAGAAAGGAAAATTTCCGACAAAGGAAGATCGAGAGGTGGAGATAGTAGGAAGATTCCTCAAGAAGAAAGAGCCTCATTTGGAAGGATTCGTTTGTTACCTTAGAAACTGCTCATTCGGTAGGGCCACGACACACCTATTATTACACGATTTCGATACAAATTCACTGCCTCATGGTAAACATATTAGTTAGAATTTCCCGTGGAGGATGGTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACAKTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTTTCACGATAAAAGTGTCCATAAAAAAAGTTTTTTTCACAAAAAAAAATTGAAAAAATGTCTGAAATTTCAAAAAAAATTCAATTTTGGAAAACCCGGGCCCAGGCCAAGGAGTCACGGGCCCTGGCCTTTAACATAATCGATGAAAACAATGGACTGAAGGAATACTTCGAGTCGCGGTCAGCTGGCTTTTGGAGAAATGGTATCCACAAGTTACCTGAATGTTGTCAGCATGTCGTGGACCACGATGGCGCAGACGGTCCATCTCGGATAATTCATGTTTTTGTGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAACCTTGATATCCTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGTTGTTACTTGACAGAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>436</pcr_amplicon_size>
		<canonical_amplicon>GTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTT</canonical_amplicon>
		<polymorphic_amplicon>GTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACAKTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38463</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>125620</contig_pos>
        <strand></strand>
        <context>aaaaggtgcg[G/T]gagCWTgaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCG</left_flank>
        <right_flank>GAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAGGAAGATCGAGAGGTGGAGATAGTAGGAAGATTCCTCAAGAAGAAAGAGCCTCATTTGGAAGGATTCGTTTGTTACCTTAGAAACTGCTCATTCGGTAGGGCCACGACACACCTATTATTACACGATTTCGATACAAATTCACTGCCTCATGGTAAACATATTAGTTAGAATTTCCCGTGGAGGATGGTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTTTCACGATAAAAGTGTCCATAAAAAAAGTTTTTTTCACAAAAAAAAATTGAAAAAATGTCTGAAATTTCAAAAAAAATTCAATTTTGGAAAACCCGGGCCCAGGCCAAGGAGTCACGGGCCCTGGCCTTTAACATAATCGATGAAAACAATGGACTGAAGGAATACTTCGAGTCGCGGTCAGCTGGCTTTTGGAGAAATGGTATCCACAAGTTACCTGAATGTTGTCAGCATGTCGTGGACCACGATGGCGCAGACGGTCCATCTCGGATAATTCATGTTTTTGTGTTATTCGTGAAAAAAAATGTACAGTAACTTTCCTTCCAACCTAATATCATTCGATACATTTCGATACAAATCTATTGTTCATTTCGAT</canonical>
            <polymorphic>CAAAGGAAGATCGAGAGGTGGAGATAGTAGGAAGATTCCTCAAGAAGAAAGAGCCTCATTTGGAAGGATTCGTTTGTTACCTTAGAAACTGCTCATTCGGTAGGGCCACGACACACCTATTATTACACGATTTCGATACAAATTCACTGCCTCATGGTAAACATATTAGTTAGAATTTCCCGTGGAGGATGGTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGKGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTTTCACGATAAAAGTGTCCATAAAAAAAGTTTTTTTCACAAAAAAAAATTGAAAAAATGTCTGAAATTTCAAAAAAAATTCAATTTTGGAAAACCCGGGCCCAGGCCAAGGAGTCACGGGCCCTGGCCTTTAACATAATCGATGAAAACAATGGACTGAAGGAATACTTCGAGTCGCGGTCAGCTGGCTTTTGGAGAAATGGTATCCACAAGTTACCTGAATGTTGTCAGCATGTCGTGGACCACGATGGCGCAGACGGTCCATCTCGGATAATTCATGTTTTTGTGTTATTCGTGAAAAAAAATGTACAGTAACTTTCCTTCCAACCTAATATCATTCGATACATTTCGATACAAATCTATTGTTCATTTCGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAACCTTGATATCCTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGTTGTTACTTGACAGAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>436</pcr_amplicon_size>
		<canonical_amplicon>GTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTT</canonical_amplicon>
		<polymorphic_amplicon>GTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGKGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38464</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>125625</contig_pos>
        <strand></strand>
        <context>gtgcgkgagC[A/T]Tgaaagtcat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGC</left_flank>
        <right_flank>TGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTAC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGATCGAGAGGTGGAGATAGTAGGAAGATTCCTCAAGAAGAAAGAGCCTCATTTGGAAGGATTCGTTTGTTACCTTAGAAACTGCTCATTCGGTAGGGCCACGACACACCTATTATTACACGATTTCGATACAAATTCACTGCCTCATGGTAAACATATTAGTTAGAATTTCCCGTGGAGGATGGTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTTTCACGATAAAAGTGTCCATAAAAAAAGTTTTTTTCACAAAAAAAAATTGAAAAAATGTCTGAAATTTCAAAAAAAATTCAATTTTGGAAAACCCGGGCCCAGGCCAAGGAGTCACGGGCCCTGGCCTTTAACATAATCGATGAAAACAATGGACTGAAGGAATACTTCGAGTCGCGGTCAGCTGGCTTTTGGAGAAATGGTATCCACAAGTTACCTGAATGTTGTCAGCATGTCGTGGACCACGATGGCGCAGACGGTCCATCTCGGATAATTCATGTTTTTGTGTTATTCGTGAAAAAAAATGTACAGTAACTTTCCTTCCAACCTAATATCATTCGATACATTTCGATACAAATCTATTGTTCATTTCGATACAAA</canonical>
            <polymorphic>GAAGATCGAGAGGTGGAGATAGTAGGAAGATTCCTCAAGAAGAAAGAGCCTCATTTGGAAGGATTCGTTTGTTACCTTAGAAACTGCTCATTCGGTAGGGCCACGACACACCTATTATTACACGATTTCGATACAAATTCACTGCCTCATGGTAAACATATTAGTTAGAATTTCCCGTGGAGGATGGTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCWTGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTTTCACGATAAAAGTGTCCATAAAAAAAGTTTTTTTCACAAAAAAAAATTGAAAAAATGTCTGAAATTTCAAAAAAAATTCAATTTTGGAAAACCCGGGCCCAGGCCAAGGAGTCACGGGCCCTGGCCTTTAACATAATCGATGAAAACAATGGACTGAAGGAATACTTCGAGTCGCGGTCAGCTGGCTTTTGGAGAAATGGTATCCACAAGTTACCTGAATGTTGTCAGCATGTCGTGGACCACGATGGCGCAGACGGTCCATCTCGGATAATTCATGTTTTTGTGTTATTCGTGAAAAAAAATGTACAGTAACTTTCCTTCCAACCTAATATCATTCGATACATTTCGATACAAATCTATTGTTCATTTCGATACAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>343 187 164 148 104 45 9</canonical_bands>
                <polymorphic_bands>343 196 164 148 104 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCAACCTTGATATCCTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGTTGTTACTTGACAGAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>436</pcr_amplicon_size>
		<canonical_amplicon>GTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTT</canonical_amplicon>
		<polymorphic_amplicon>GTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCWTGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38465</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>125668</contig_pos>
        <strand></strand>
        <context>tggactgttc[T/C]ccttyacycc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTC</left_flank>
        <right_flank>CCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNN</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAGCCTCATTTGGAAGGATTCGTTTGTTACCTTAGAAACTGCTCATTCGGTAGGGCCACGACACACCTATTATTACACGATTTCGATACAAATTCACTGCCTCATGGTAAACATATTAGTTAGAATTTCCCGTGGAGGATGGTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTTTCACGATAAAAGTGTCCATAAAAAAAGTTTTTTTCACAAAAAAAAATTGAAAAAATGTCTGAAATTTCAAAAAAAATTCAATTTTGGAAAACCCGGGCCCAGGCCAAGGAGTCACGGGCCCTGGCCTTTAACATAATCGATGAAAACAATGGACTGAAGGAATACTTCGAGTCGCGGTCAGCTGGCTTTTGGAGAAATGGTATCCACAAGTTACCTGAATGTTGTCAGCATGTCGTGGACCACGATGGCGCAGACGGTCCATCTCGGATAATTCATGTTTTTGTGTTATTCGTGAAAAAAAATGTACAGTAACTTTCCTTCCAACCTAATATCATTCGATACATTTCGATACAAATCTATTGTTCATTTCGATACAAATCTATTGATTTCGATACAAATCTACTGTTCCAAGGAAAAAATT</canonical>
            <polymorphic>AAGAGCCTCATTTGGAAGGATTCGTTTGTTACCTTAGAAACTGCTCATTCGGTAGGGCCACGACACACCTATTATTACACGATTTCGATACAAATTCACTGCCTCATGGTAAACATATTAGTTAGAATTTCCCGTGGAGGATGGTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCYCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTTTCACGATAAAAGTGTCCATAAAAAAAGTTTTTTTCACAAAAAAAAATTGAAAAAATGTCTGAAATTTCAAAAAAAATTCAATTTTGGAAAACCCGGGCCCAGGCCAAGGAGTCACGGGCCCTGGCCTTTAACATAATCGATGAAAACAATGGACTGAAGGAATACTTCGAGTCGCGGTCAGCTGGCTTTTGGAGAAATGGTATCCACAAGTTACCTGAATGTTGTCAGCATGTCGTGGACCACGATGGCGCAGACGGTCCATCTCGGATAATTCATGTTTTTGTGTTATTCGTGAAAAAAAATGTACAGTAACTTTCCTTCCAACCTAATATCATTCGATACATTTCGATACAAATCTATTGTTCATTTCGATACAAATCTATTGATTTCGATACAAATCTACTGTTCCAAGGAAAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAACCTTGATATCCTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGTTGTTACTTGACAGAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>436</pcr_amplicon_size>
		<canonical_amplicon>GTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTT</canonical_amplicon>
		<polymorphic_amplicon>GTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCYCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38466</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>125673</contig_pos>
        <strand></strand>
        <context>tgttcycctt[T/C]acyccgttaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTT</left_flank>
        <right_flank>ACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCATTTGGAAGGATTCGTTTGTTACCTTAGAAACTGCTCATTCGGTAGGGCCACGACACACCTATTATTACACGATTTCGATACAAATTCACTGCCTCATGGTAAACATATTAGTTAGAATTTCCCGTGGAGGATGGTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTTTCACGATAAAAGTGTCCATAAAAAAAGTTTTTTTCACAAAAAAAAATTGAAAAAATGTCTGAAATTTCAAAAAAAATTCAATTTTGGAAAACCCGGGCCCAGGCCAAGGAGTCACGGGCCCTGGCCTTTAACATAATCGATGAAAACAATGGACTGAAGGAATACTTCGAGTCGCGGTCAGCTGGCTTTTGGAGAAATGGTATCCACAAGTTACCTGAATGTTGTCAGCATGTCGTGGACCACGATGGCGCAGACGGTCCATCTCGGATAATTCATGTTTTTGTGTTATTCGTGAAAAAAAATGTACAGTAACTTTCCTTCCAACCTAATATCATTCGATACATTTCGATACAAATCTATTGTTCATTTCGATACAAATCTATTGATTTCGATACAAATCTACTGTTCCAAGGAAAAAATTTGCCG</canonical>
            <polymorphic>CCTCATTTGGAAGGATTCGTTTGTTACCTTAGAAACTGCTCATTCGGTAGGGCCACGACACACCTATTATTACACGATTTCGATACAAATTCACTGCCTCATGGTAAACATATTAGTTAGAATTTCCCGTGGAGGATGGTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTYACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTTTCACGATAAAAGTGTCCATAAAAAAAGTTTTTTTCACAAAAAAAAATTGAAAAAATGTCTGAAATTTCAAAAAAAATTCAATTTTGGAAAACCCGGGCCCAGGCCAAGGAGTCACGGGCCCTGGCCTTTAACATAATCGATGAAAACAATGGACTGAAGGAATACTTCGAGTCGCGGTCAGCTGGCTTTTGGAGAAATGGTATCCACAAGTTACCTGAATGTTGTCAGCATGTCGTGGACCACGATGGCGCAGACGGTCCATCTCGGATAATTCATGTTTTTGTGTTATTCGTGAAAAAAAATGTACAGTAACTTTCCTTCCAACCTAATATCATTCGATACATTTCGATACAAATCTATTGTTCATTTCGATACAAATCTATTGATTTCGATACAAATCTACTGTTCCAAGGAAAAAATTTGCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAACCTTGATATCCTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGTTGTTACTTGACAGAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>436</pcr_amplicon_size>
		<canonical_amplicon>GTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTT</canonical_amplicon>
		<polymorphic_amplicon>GTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTYACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38467</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>125676</contig_pos>
        <strand></strand>
        <context>tcyccttyac[T/C]ccgttaaagC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTAC</left_flank>
        <right_flank>CCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTGGAAGGATTCGTTTGTTACCTTAGAAACTGCTCATTCGGTAGGGCCACGACACACCTATTATTACACGATTTCGATACAAATTCACTGCCTCATGGTAAACATATTAGTTAGAATTTCCCGTGGAGGATGGTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTTTCACGATAAAAGTGTCCATAAAAAAAGTTTTTTTCACAAAAAAAAATTGAAAAAATGTCTGAAATTTCAAAAAAAATTCAATTTTGGAAAACCCGGGCCCAGGCCAAGGAGTCACGGGCCCTGGCCTTTAACATAATCGATGAAAACAATGGACTGAAGGAATACTTCGAGTCGCGGTCAGCTGGCTTTTGGAGAAATGGTATCCACAAGTTACCTGAATGTTGTCAGCATGTCGTGGACCACGATGGCGCAGACGGTCCATCTCGGATAATTCATGTTTTTGTGTTATTCGTGAAAAAAAATGTACAGTAACTTTCCTTCCAACCTAATATCATTCGATACATTTCGATACAAATCTATTGTTCATTTCGATACAAATCTATTGATTTCGATACAAATCTACTGTTCCAAGGAAAAAATTTGCCGCTA</canonical>
            <polymorphic>CATTTGGAAGGATTCGTTTGTTACCTTAGAAACTGCTCATTCGGTAGGGCCACGACACACCTATTATTACACGATTTCGATACAAATTCACTGCCTCATGGTAAACATATTAGTTAGAATTTCCCGTGGAGGATGGTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACYCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTTTCACGATAAAAGTGTCCATAAAAAAAGTTTTTTTCACAAAAAAAAATTGAAAAAATGTCTGAAATTTCAAAAAAAATTCAATTTTGGAAAACCCGGGCCCAGGCCAAGGAGTCACGGGCCCTGGCCTTTAACATAATCGATGAAAACAATGGACTGAAGGAATACTTCGAGTCGCGGTCAGCTGGCTTTTGGAGAAATGGTATCCACAAGTTACCTGAATGTTGTCAGCATGTCGTGGACCACGATGGCGCAGACGGTCCATCTCGGATAATTCATGTTTTTGTGTTATTCGTGAAAAAAAATGTACAGTAACTTTCCTTCCAACCTAATATCATTCGATACATTTCGATACAAATCTATTGTTCATTTCGATACAAATCTATTGATTTCGATACAAATCTACTGTTCCAAGGAAAAAATTTGCCGCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAACCTTGATATCCTGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGTTGTTACTTGACAGAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>436</pcr_amplicon_size>
		<canonical_amplicon>GTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACTCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTT</canonical_amplicon>
		<polymorphic_amplicon>GTCAACCTTGATATCCTGAAAAAATATTAGGTTGGAAGGAAAGTAACTGTCCATTGCTTCATTGGAAAATAATTCGAAAACGAGTTCAACACAAGATTAGCAGTATGCACCCTCGTGGTCCACAACATGTTGCCAACATTCAGGTAACTTGTGCATACCCCTCCAATCGCAAGCTGACATCGAATAGAATTATTCATTTTTCCCAGTTTTTTTCTCGTCAACATTGTGAATTTCCTTTCCCTCCAGGTGGCGTGTATATCTCCGAATAACCGATAATCTGAAAAAGGCACAGATTATAAAAAGGTGCGGGAGCATGAAAGTCATGTCGTACCTGAGACGCTTTGGCTGGACTGTTCTCCTTTACYCCGTTAAAGCATACTTGCAACAAGCCGGGCCGGGNNNNNNNNNNAAGATTTTTCTGTCAAGTAACAACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38468</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>137055</contig_pos>
        <strand>+</strand>
        <context>CAAATTTACT[A/G]GAAWACCTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAACACGAATGTCTGAAAACCTGAAACATTTCAAATTATCAAATTTACT</left_flank>
        <right_flank>GAAAACCTACCAAGGACGCGAATCTCGAGCTGATCGTGACCGGATACCTC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACAGCCACCTCTAGATTTCCAACTCCGGCTTCAGATGCATCAACTAGAATTGGAAAATTAATTTAAAAAGCTATATTACTGTAGCCGTACCGGTGAAATAGACTGGTTTGTCAAGAAGACCCTTTGGGATGGCTCCGACCTTGATCTTAGCTGGATCGTAAGCTCTGCAGGTGAATGGGGAGCCCGTGACTGGTACACCACCATATCTAACATCAATTTCGTGATCTCCAACTTGAGCGGGTGTGAAGTTGATTTGCATGTGTCCTGGCTCAATTTCCACGATTTCTGTTCCAATTTCATTTTTCTTGCTATCTGAAACGAATAGAAAAATTGATTGGGGGACAATCTTCAAGTGTTAGAATAGGGGTAAGATTCTAATTTCATGCAGAGAGGGGAAAATAGGAATGTACAGTGAAGAGGAGCAAAAAATTTTCAGATTTTTTTTCAAGAACACGAATGTCTGAAAACCTGAAACATTTCAAATTATCAAATTTACTGGAAAACCTACCAAGGACGCGAATCTCGAGCTGATCGTGACCGGATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGACATTTTTAGATTAGGAGATGGATTTGTTGAAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCG</canonical>
            <polymorphic>AAACAGCCACCTCTAGATTTCCAACTCCGGCTTCAGATGCATCAACTAGAATTGGAAAATTAATTTAAAAAGCTATATTACTGTAGCCGTACCGGTGAAATAGACTGGTTTGTCAAGAAGACCCTTTGGGATGGCTCCGACCTTGATCTTAGCTGGATCGTAAGCTCTGCAGGTGAATGGGGAGCCCGTGACTGGTACACCACCATATCTAACATCAATTTCGTGATCTCCAACTTGAGCGGGTGTGAAGTTGATTTGCATGTGTCCTGGCTCAATTTCCACGATTTCTGTTCCAATTTCATTTTTCTTGCTATCTGAAACGAATAGAAAAATTGATTGGGGGACAATCTTCAAGTGTTAGAATAGGGGTAAGATTCTAATTTCATGCAGAGAGGGGAAAATAGGAATGTACAGTGAAGAGGAGCAAAAAATTTTCAGATTTTTTTTCAAGAACACGAATGTCTGAAAACCTGAAACATTTCAAATTATCAAATTTACTRGAAAACCTACCAAGGACGCGAATCTCGAGCTGATCGTGACCGGATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGACATTTTTAGATTAGGAGATGGATTTGTTGAAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAATAGGAATGTACAGTGAA</pcr_primer_p1>
		<pcr_primer_p2>TCTTTCAGAGTAAGACACATCGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAAAATAGGAATGTACAGTGAAGAGGAGCAAAAAATTTTCAGATTTTTTTTCAAGAACACGAATGTCTGAAAACCTGAAACATTTCAAATTATCAAATTTACTGGAAAACCTACCAAGGACGCGAATCTCGAGCTGATCGTGACCGGATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GGAAAATAGGAATGTACAGTGAAGAGGAGCAAAAAATTTTCAGATTTTTTTTCAAGAACACGAATGTCTGAAAACCTGAAACATTTCAAATTATCAAATTTACTRGAAAACCTACCAAGGACGCGAATCTCGAGCTGATCGTGACCGGATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38469</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>137059</contig_pos>
        <strand>+</strand>
        <context>TTTACTRGAA[A/T]ACCTACCAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CACGAATGTCTGAAAACCTGAAACATTTCAAATTATCAAATTTACTGGAA</left_flank>
        <right_flank>ACCTACCAAGGACGCGAATCTCGAGCTGATCGTGACCGGATACCTCAACG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCACCTCTAGATTTCCAACTCCGGCTTCAGATGCATCAACTAGAATTGGAAAATTAATTTAAAAAGCTATATTACTGTAGCCGTACCGGTGAAATAGACTGGTTTGTCAAGAAGACCCTTTGGGATGGCTCCGACCTTGATCTTAGCTGGATCGTAAGCTCTGCAGGTGAATGGGGAGCCCGTGACTGGTACACCACCATATCTAACATCAATTTCGTGATCTCCAACTTGAGCGGGTGTGAAGTTGATTTGCATGTGTCCTGGCTCAATTTCCACGATTTCTGTTCCAATTTCATTTTTCTTGCTATCTGAAACGAATAGAAAAATTGATTGGGGGACAATCTTCAAGTGTTAGAATAGGGGTAAGATTCTAATTTCATGCAGAGAGGGGAAAATAGGAATGTACAGTGAAGAGGAGCAAAAAATTTTCAGATTTTTTTTCAAGAACACGAATGTCTGAAAACCTGAAACATTTCAAATTATCAAATTTACTGGAAAACCTACCAAGGACGCGAATCTCGAGCTGATCGTGACCGGATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGACATTTTTAGATTAGGAGATGGATTTGTTGAAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACA</canonical>
            <polymorphic>AGCCACCTCTAGATTTCCAACTCCGGCTTCAGATGCATCAACTAGAATTGGAAAATTAATTTAAAAAGCTATATTACTGTAGCCGTACCGGTGAAATAGACTGGTTTGTCAAGAAGACCCTTTGGGATGGCTCCGACCTTGATCTTAGCTGGATCGTAAGCTCTGCAGGTGAATGGGGAGCCCGTGACTGGTACACCACCATATCTAACATCAATTTCGTGATCTCCAACTTGAGCGGGTGTGAAGTTGATTTGCATGTGTCCTGGCTCAATTTCCACGATTTCTGTTCCAATTTCATTTTTCTTGCTATCTGAAACGAATAGAAAAATTGATTGGGGGACAATCTTCAAGTGTTAGAATAGGGGTAAGATTCTAATTTCATGCAGAGAGGGGAAAATAGGAATGTACAGTGAAGAGGAGCAAAAAATTTTCAGATTTTTTTTCAAGAACACGAATGTCTGAAAACCTGAAACATTTCAAATTATCAAATTTACTGGAAWACCTACCAAGGACGCGAATCTCGAGCTGATCGTGACCGGATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGACATTTTTAGATTAGGAGATGGATTTGTTGAAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAAATAGGAATGTACAGTGAA</pcr_primer_p1>
		<pcr_primer_p2>TCTTTCAGAGTAAGACACATCGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGAAAATAGGAATGTACAGTGAAGAGGAGCAAAAAATTTTCAGATTTTTTTTCAAGAACACGAATGTCTGAAAACCTGAAACATTTCAAATTATCAAATTTACTGGAAAACCTACCAAGGACGCGAATCTCGAGCTGATCGTGACCGGATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGA</canonical_amplicon>
		<polymorphic_amplicon>GGAAAATAGGAATGTACAGTGAAGAGGAGCAAAAAATTTTCAGATTTTTTTTCAAGAACACGAATGTCTGAAAACCTGAAACATTTCAAATTATCAAATTTACTGGAAWACCTACCAAGGACGCGAATCTCGAGCTGATCGTGACCGGATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38470</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>137305</contig_pos>
        <strand></strand>
        <context>atttatgtga[A/T]tttttacaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGA</left_flank>
        <right_flank>TTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTA</right_flank>
        <qual_score>47</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGATTTGCATGTGTCCTGGCTCAATTTCCACGATTTCTGTTCCAATTTCATTTTTCTTGCTATCTGAAACGAATAGAAAAATTGATTGGGGGACAATCTTCAAGTGTTAGAATAGGGGTAAGATTCTAATTTCATGCAGAGAGGGGAAAATAGGAATGTACAGTGAAGAGGAGCAAAAAATTTTCAGATTTTTTTTCAAGAACACGAATGTCTGAAAACCTGAAACATTTCAAATTATCAAATTTACTGGAAAACCTACCAAGGACGCGAATCTCGAGCTGATCGTGACCGGATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGACATTTTTAGATTAGGAGATGGATTTGTTGAAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTTTCCAACCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGTTTTGCGGCCCCTTCTCCCCCCTCCAATCAAAATCTTATGACACTGTAAACAAGTGAATTAGGATGAGCAGCATTCCAGTTGAGAAGAGGATAAAATGTGTTGGAATGTGCTCACTTCAATGTGAATTCTAACCTGACTCTGACACTGAATTAGTGTATAAAGA</canonical>
            <polymorphic>TTGATTTGCATGTGTCCTGGCTCAATTTCCACGATTTCTGTTCCAATTTCATTTTTCTTGCTATCTGAAACGAATAGAAAAATTGATTGGGGGACAATCTTCAAGTGTTAGAATAGGGGTAAGATTCTAATTTCATGCAGAGAGGGGAAAATAGGAATGTACAGTGAAGAGGAGCAAAAAATTTTCAGATTTTTTTTCAAGAACACGAATGTCTGAAAACCTGAAACATTTCAAATTATCAAATTTACTGGAAAACCTACCAAGGACGCGAATCTCGAGCTGATCGTGACCGGATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGACATTTTTAGATTAGGAGATGGATTTGTTGAAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAWTTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTTTCCAACCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGTTTTGCGGCCCCTTCTCCCCCCTCCAATCAAAATCTTATGACACTGTAAACAAGTGAATTAGGATGAGCAGCATTCCAGTTGAGAAGAGGATAAAATGTGTTGGAATGTGCTCACTTCAATGTGAATTCTAACCTGACTCTGACACTGAATTAGTGTATAAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>462 179 111 101 62 45 40</canonical_bands>
                <polymorphic_bands>507 179 111 101 62 40</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>286 101 85 68 54 52 51 48 45 41 36 26 24 23 21 16 15 8</canonical_bands>
                <polymorphic_bands>286 101 86 85 68 54 52 51 48 36 26 24 23 21 16 15 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTGAGTTGGAAGAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATGAGATTTACGAACACTTCTGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAWTTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38471</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>137317</contig_pos>
        <strand></strand>
        <context>ttttacaaaa[T/A]atttgtcaac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAA</left_flank>
        <right_flank>ATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTA</right_flank>
        <qual_score>49</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTCCTGGCTCAATTTCCACGATTTCTGTTCCAATTTCATTTTTCTTGCTATCTGAAACGAATAGAAAAATTGATTGGGGGACAATCTTCAAGTGTTAGAATAGGGGTAAGATTCTAATTTCATGCAGAGAGGGGAAAATAGGAATGTACAGTGAAGAGGAGCAAAAAATTTTCAGATTTTTTTTCAAGAACACGAATGTCTGAAAACCTGAAACATTTCAAATTATCAAATTTACTGGAAAACCTACCAAGGACGCGAATCTCGAGCTGATCGTGACCGGATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGACATTTTTAGATTAGGAGATGGATTTGTTGAAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTTTCCAACCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGTTTTGCGGCCCCTTCTCCCCCCTCCAATCAAAATCTTATGACACTGTAAACAAGTGAATTAGGATGAGCAGCATTCCAGTTGAGAAGAGGATAAAATGTGTTGGAATGTGCTCACTTCAATGTGAATTCTAACCTGACTCTGACACTGAATTAGTGTATAAAGATGCACAAACAGC</canonical>
            <polymorphic>TGTCCTGGCTCAATTTCCACGATTTCTGTTCCAATTTCATTTTTCTTGCTATCTGAAACGAATAGAAAAATTGATTGGGGGACAATCTTCAAGTGTTAGAATAGGGGTAAGATTCTAATTTCATGCAGAGAGGGGAAAATAGGAATGTACAGTGAAGAGGAGCAAAAAATTTTCAGATTTTTTTTCAAGAACACGAATGTCTGAAAACCTGAAACATTTCAAATTATCAAATTTACTGGAAAACCTACCAAGGACGCGAATCTCGAGCTGATCGTGACCGGATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGACATTTTTAGATTAGGAGATGGATTTGTTGAAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAAWATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTTTCCAACCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGTTTTGCGGCCCCTTCTCCCCCCTCCAATCAAAATCTTATGACACTGTAAACAAGTGAATTAGGATGAGCAGCATTCCAGTTGAGAAGAGGATAAAATGTGTTGGAATGTGCTCACTTCAATGTGAATTCTAACCTGACTCTGACACTGAATTAGTGTATAAAGATGCACAAACAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTGAGTTGGAAGAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATGAGATTTACGAACACTTCTGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAAWATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38472</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>137337</contig_pos>
        <strand></strand>
        <context>ctacaaaact[G/A]aagctctaat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACT</left_flank>
        <right_flank>AAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAG</right_flank>
        <qual_score>49</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTCTGTTCCAATTTCATTTTTCTTGCTATCTGAAACGAATAGAAAAATTGATTGGGGGACAATCTTCAAGTGTTAGAATAGGGGTAAGATTCTAATTTCATGCAGAGAGGGGAAAATAGGAATGTACAGTGAAGAGGAGCAAAAAATTTTCAGATTTTTTTTCAAGAACACGAATGTCTGAAAACCTGAAACATTTCAAATTATCAAATTTACTGGAAAACCTACCAAGGACGCGAATCTCGAGCTGATCGTGACCGGATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGACATTTTTAGATTAGGAGATGGATTTGTTGAAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTTTCCAACCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGTTTTGCGGCCCCTTCTCCCCCCTCCAATCAAAATCTTATGACACTGTAAACAAGTGAATTAGGATGAGCAGCATTCCAGTTGAGAAGAGGATAAAATGTGTTGGAATGTGCTCACTTCAATGTGAATTCTAACCTGACTCTGACACTGAATTAGTGTATAAAGATGCACAAACAGCCTTTTGCAGAACGCTTCTTT</canonical>
            <polymorphic>GATTTCTGTTCCAATTTCATTTTTCTTGCTATCTGAAACGAATAGAAAAATTGATTGGGGGACAATCTTCAAGTGTTAGAATAGGGGTAAGATTCTAATTTCATGCAGAGAGGGGAAAATAGGAATGTACAGTGAAGAGGAGCAAAAAATTTTCAGATTTTTTTTCAAGAACACGAATGTCTGAAAACCTGAAACATTTCAAATTATCAAATTTACTGGAAAACCTACCAAGGACGCGAATCTCGAGCTGATCGTGACCGGATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGACATTTTTAGATTAGGAGATGGATTTGTTGAAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTRAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTTTCCAACCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGTTTTGCGGCCCCTTCTCCCCCCTCCAATCAAAATCTTATGACACTGTAAACAAGTGAATTAGGATGAGCAGCATTCCAGTTGAGAAGAGGATAAAATGTGTTGGAATGTGCTCACTTCAATGTGAATTCTAACCTGACTCTGACACTGAATTAGTGTATAAAGATGCACAAACAGCCTTTTGCAGAACGCTTCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTGAGTTGGAAGAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATGAGATTTACGAACACTTCTGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTRAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38473</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>137364</contig_pos>
        <strand></strand>
        <context>tagtaaaatt[A/G]ctaaaytttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATT</left_flank>
        <right_flank>CTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAAT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTATCTGAAACGAATAGAAAAATTGATTGGGGGACAATCTTCAAGTGTTAGAATAGGGGTAAGATTCTAATTTCATGCAGAGAGGGGAAAATAGGAATGTACAGTGAAGAGGAGCAAAAAATTTTCAGATTTTTTTTCAAGAACACGAATGTCTGAAAACCTGAAACATTTCAAATTATCAAATTTACTGGAAAACCTACCAAGGACGCGAATCTCGAGCTGATCGTGACCGGATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGACATTTTTAGATTAGGAGATGGATTTGTTGAAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTTTCCAACCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGTTTTGCGGCCCCTTCTCCCCCCTCCAATCAAAATCTTATGACACTGTAAACAAGTGAATTAGGATGAGCAGCATTCCAGTTGAGAAGAGGATAAAATGTGTTGGAATGTGCTCACTTCAATGTGAATTCTAACCTGACTCTGACACTGAATTAGTGTATAAAGATGCACAAACAGCCTTTTGCAGAACGCTTCTTTTTCTTACAAAAACAAGTAGAAACCAGA</canonical>
            <polymorphic>GCTATCTGAAACGAATAGAAAAATTGATTGGGGGACAATCTTCAAGTGTTAGAATAGGGGTAAGATTCTAATTTCATGCAGAGAGGGGAAAATAGGAATGTACAGTGAAGAGGAGCAAAAAATTTTCAGATTTTTTTTCAAGAACACGAATGTCTGAAAACCTGAAACATTTCAAATTATCAAATTTACTGGAAAACCTACCAAGGACGCGAATCTCGAGCTGATCGTGACCGGATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGACATTTTTAGATTAGGAGATGGATTTGTTGAAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTRCTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTTTCCAACCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGTTTTGCGGCCCCTTCTCCCCCCTCCAATCAAAATCTTATGACACTGTAAACAAGTGAATTAGGATGAGCAGCATTCCAGTTGAGAAGAGGATAAAATGTGTTGGAATGTGCTCACTTCAATGTGAATTCTAACCTGACTCTGACACTGAATTAGTGTATAAAGATGCACAAACAGCCTTTTGCAGAACGCTTCTTTTTCTTACAAAAACAAGTAGAAACCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTGAGTTGGAAGAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATGAGATTTACGAACACTTCTGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTRCTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38474</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>137370</contig_pos>
        <strand></strand>
        <context>aattrctaaa[C/T]ttttcagaca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAA</left_flank>
        <right_flank>TTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAACGAATAGAAAAATTGATTGGGGGACAATCTTCAAGTGTTAGAATAGGGGTAAGATTCTAATTTCATGCAGAGAGGGGAAAATAGGAATGTACAGTGAAGAGGAGCAAAAAATTTTCAGATTTTTTTTCAAGAACACGAATGTCTGAAAACCTGAAACATTTCAAATTATCAAATTTACTGGAAAACCTACCAAGGACGCGAATCTCGAGCTGATCGTGACCGGATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGACATTTTTAGATTAGGAGATGGATTTGTTGAAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTTTCCAACCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGTTTTGCGGCCCCTTCTCCCCCCTCCAATCAAAATCTTATGACACTGTAAACAAGTGAATTAGGATGAGCAGCATTCCAGTTGAGAAGAGGATAAAATGTGTTGGAATGTGCTCACTTCAATGTGAATTCTAACCTGACTCTGACACTGAATTAGTGTATAAAGATGCACAAACAGCCTTTTGCAGAACGCTTCTTTTTCTTACAAAAACAAGTAGAAACCAGAAAGCGA</canonical>
            <polymorphic>TGAAACGAATAGAAAAATTGATTGGGGGACAATCTTCAAGTGTTAGAATAGGGGTAAGATTCTAATTTCATGCAGAGAGGGGAAAATAGGAATGTACAGTGAAGAGGAGCAAAAAATTTTCAGATTTTTTTTCAAGAACACGAATGTCTGAAAACCTGAAACATTTCAAATTATCAAATTTACTGGAAAACCTACCAAGGACGCGAATCTCGAGCTGATCGTGACCGGATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGACATTTTTAGATTAGGAGATGGATTTGTTGAAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAAYTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTTTCCAACCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGTTTTGCGGCCCCTTCTCCCCCCTCCAATCAAAATCTTATGACACTGTAAACAAGTGAATTAGGATGAGCAGCATTCCAGTTGAGAAGAGGATAAAATGTGTTGGAATGTGCTCACTTCAATGTGAATTCTAACCTGACTCTGACACTGAATTAGTGTATAAAGATGCACAAACAGCCTTTTGCAGAACGCTTCTTTTTCTTACAAAAACAAGTAGAAACCAGAAAGCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTGAGTTGGAAGAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATGAGATTTACGAACACTTCTGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAAYTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38475</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>137420</contig_pos>
        <strand></strand>
        <context>AAAATTGAAA[A/T]RCWRTCGKTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAA</left_flank>
        <right_flank>GCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGGTAAGATTCTAATTTCATGCAGAGAGGGGAAAATAGGAATGTACAGTGAAGAGGAGCAAAAAATTTTCAGATTTTTTTTCAAGAACACGAATGTCTGAAAACCTGAAACATTTCAAATTATCAAATTTACTGGAAAACCTACCAAGGACGCGAATCTCGAGCTGATCGTGACCGGATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGACATTTTTAGATTAGGAGATGGATTTGTTGAAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTTTCCAACCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGTTTTGCGGCCCCTTCTCCCCCCTCCAATCAAAATCTTATGACACTGTAAACAAGTGAATTAGGATGAGCAGCATTCCAGTTGAGAAGAGGATAAAATGTGTTGGAATGTGCTCACTTCAATGTGAATTCTAACCTGACTCTGACACTGAATTAGTGTATAAAGATGCACAAACAGCCTTTTGCAGAACGCTTCTTTTTCTTACAAAAACAAGTAGAAACCAGAAAGCGACAGGAAATCAAGTTGCTCACCTTTTTCTCCTTCTTCAGCGTAGCTCGTTC</canonical>
            <polymorphic>GGGGTAAGATTCTAATTTCATGCAGAGAGGGGAAAATAGGAATGTACAGTGAAGAGGAGCAAAAAATTTTCAGATTTTTTTTCAAGAACACGAATGTCTGAAAACCTGAAACATTTCAAATTATCAAATTTACTGGAAAACCTACCAAGGACGCGAATCTCGAGCTGATCGTGACCGGATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGACATTTTTAGATTAGGAGATGGATTTGTTGAAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAWGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTTTCCAACCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGTTTTGCGGCCCCTTCTCCCCCCTCCAATCAAAATCTTATGACACTGTAAACAAGTGAATTAGGATGAGCAGCATTCCAGTTGAGAAGAGGATAAAATGTGTTGGAATGTGCTCACTTCAATGTGAATTCTAACCTGACTCTGACACTGAATTAGTGTATAAAGATGCACAAACAGCCTTTTGCAGAACGCTTCTTTTTCTTACAAAAACAAGTAGAAACCAGAAAGCGACAGGAAATCAAGTTGCTCACCTTTTTCTCCTTCTTCAGCGTAGCTCGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>492 256 164 67 14 7</canonical_bands>
                <polymorphic_bands>506 256 164 67 7</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>256 167 164 124 104 97 48 19 14 7</canonical_bands>
                <polymorphic_bands>256 167 164 138 104 97 48 19 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTGAGTTGGAAGAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATGAGATTTACGAACACTTCTGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAWGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38476</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>137421</contig_pos>
        <strand></strand>
        <context>AAATTGAAAW[G/A]CWRTCGKTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAA</left_flank>
        <right_flank>CTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGTAAGATTCTAATTTCATGCAGAGAGGGGAAAATAGGAATGTACAGTGAAGAGGAGCAAAAAATTTTCAGATTTTTTTTCAAGAACACGAATGTCTGAAAACCTGAAACATTTCAAATTATCAAATTTACTGGAAAACCTACCAAGGACGCGAATCTCGAGCTGATCGTGACCGGATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGACATTTTTAGATTAGGAGATGGATTTGTTGAAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTTTCCAACCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGTTTTGCGGCCCCTTCTCCCCCCTCCAATCAAAATCTTATGACACTGTAAACAAGTGAATTAGGATGAGCAGCATTCCAGTTGAGAAGAGGATAAAATGTGTTGGAATGTGCTCACTTCAATGTGAATTCTAACCTGACTCTGACACTGAATTAGTGTATAAAGATGCACAAACAGCCTTTTGCAGAACGCTTCTTTTTCTTACAAAAACAAGTAGAAACCAGAAAGCGACAGGAAATCAAGTTGCTCACCTTTTTCTCCTTCTTCAGCGTAGCTCGTTCT</canonical>
            <polymorphic>GGGTAAGATTCTAATTTCATGCAGAGAGGGGAAAATAGGAATGTACAGTGAAGAGGAGCAAAAAATTTTCAGATTTTTTTTCAAGAACACGAATGTCTGAAAACCTGAAACATTTCAAATTATCAAATTTACTGGAAAACCTACCAAGGACGCGAATCTCGAGCTGATCGTGACCGGATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGACATTTTTAGATTAGGAGATGGATTTGTTGAAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAARCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTTTCCAACCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGTTTTGCGGCCCCTTCTCCCCCCTCCAATCAAAATCTTATGACACTGTAAACAAGTGAATTAGGATGAGCAGCATTCCAGTTGAGAAGAGGATAAAATGTGTTGGAATGTGCTCACTTCAATGTGAATTCTAACCTGACTCTGACACTGAATTAGTGTATAAAGATGCACAAACAGCCTTTTGCAGAACGCTTCTTTTTCTTACAAAAACAAGTAGAAACCAGAAAGCGACAGGAAATCAAGTTGCTCACCTTTTTCTCCTTCTTCAGCGTAGCTCGTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>492 256 163 67 14 8</canonical_bands>
                <polymorphic_bands>506 256 163 67 8</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>256 167 163 124 104 97 48 19 14 8</canonical_bands>
                <polymorphic_bands>256 167 163 138 104 97 48 19 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATTGAGTTGGAAGAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATGAGATTTACGAACACTTCTGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCAT</canonical_amplicon>
		<polymorphic_amplicon>AAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAARCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38477</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>137423</contig_pos>
        <strand>+</strand>
        <context>ATTGAAAWRC[A/T]RTCGKTAAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGC</left_flank>
        <right_flank>TTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAAGATTCTAATTTCATGCAGAGAGGGGAAAATAGGAATGTACAGTGAAGAGGAGCAAAAAATTTTCAGATTTTTTTTCAAGAACACGAATGTCTGAAAACCTGAAACATTTCAAATTATCAAATTTACTGGAAAACCTACCAAGGACGCGAATCTCGAGCTGATCGTGACCGGATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGACATTTTTAGATTAGGAGATGGATTTGTTGAAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTTTCCAACCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGTTTTGCGGCCCCTTCTCCCCCCTCCAATCAAAATCTTATGACACTGTAAACAAGTGAATTAGGATGAGCAGCATTCCAGTTGAGAAGAGGATAAAATGTGTTGGAATGTGCTCACTTCAATGTGAATTCTAACCTGACTCTGACACTGAATTAGTGTATAAAGATGCACAAACAGCCTTTTGCAGAACGCTTCTTTTTCTTACAAAAACAAGTAGAAACCAGAAAGCGACAGGAAATCAAGTTGCTCACCTTTTTCTCCTTCTTCAGCGTAGCTCGTTCTTC</canonical>
            <polymorphic>GTAAGATTCTAATTTCATGCAGAGAGGGGAAAATAGGAATGTACAGTGAAGAGGAGCAAAAAATTTTCAGATTTTTTTTCAAGAACACGAATGTCTGAAAACCTGAAACATTTCAAATTATCAAATTTACTGGAAAACCTACCAAGGACGCGAATCTCGAGCTGATCGTGACCGGATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGACATTTTTAGATTAGGAGATGGATTTGTTGAAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCWTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTTTCCAACCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGTTTTGCGGCCCCTTCTCCCCCCTCCAATCAAAATCTTATGACACTGTAAACAAGTGAATTAGGATGAGCAGCATTCCAGTTGAGAAGAGGATAAAATGTGTTGGAATGTGCTCACTTCAATGTGAATTCTAACCTGACTCTGACACTGAATTAGTGTATAAAGATGCACAAACAGCCTTTTGCAGAACGCTTCTTTTTCTTACAAAAACAAGTAGAAACCAGAAAGCGACAGGAAATCAAGTTGCTCACCTTTTTCTCCTTCTTCAGCGTAGCTCGTTCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>492 256 161 67 14 10</canonical_bands>
                <polymorphic_bands>506 256 161 67 10</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>256 167 161 124 104 97 48 19 14 10</canonical_bands>
                <polymorphic_bands>256 167 161 138 104 97 48 19 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGAAGAAAAACATGCTAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTCTAACCGTTTTGTGAGAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>TTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAA</canonical_amplicon>
		<polymorphic_amplicon>TTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCWTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38478</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>137424</contig_pos>
        <strand>+</strand>
        <context>TTGAAAWRCW[A/G]TCGKTAAGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCT</left_flank>
        <right_flank>TCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAGATTCTAATTTCATGCAGAGAGGGGAAAATAGGAATGTACAGTGAAGAGGAGCAAAAAATTTTCAGATTTTTTTTCAAGAACACGAATGTCTGAAAACCTGAAACATTTCAAATTATCAAATTTACTGGAAAACCTACCAAGGACGCGAATCTCGAGCTGATCGTGACCGGATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGACATTTTTAGATTAGGAGATGGATTTGTTGAAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTTTCCAACCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGTTTTGCGGCCCCTTCTCCCCCCTCCAATCAAAATCTTATGACACTGTAAACAAGTGAATTAGGATGAGCAGCATTCCAGTTGAGAAGAGGATAAAATGTGTTGGAATGTGCTCACTTCAATGTGAATTCTAACCTGACTCTGACACTGAATTAGTGTATAAAGATGCACAAACAGCCTTTTGCAGAACGCTTCTTTTTCTTACAAAAACAAGTAGAAACCAGAAAGCGACAGGAAATCAAGTTGCTCACCTTTTTCTCCTTCTTCAGCGTAGCTCGTTCTTCT</canonical>
            <polymorphic>TAAGATTCTAATTTCATGCAGAGAGGGGAAAATAGGAATGTACAGTGAAGAGGAGCAAAAAATTTTCAGATTTTTTTTCAAGAACACGAATGTCTGAAAACCTGAAACATTTCAAATTATCAAATTTACTGGAAAACCTACCAAGGACGCGAATCTCGAGCTGATCGTGACCGGATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGACATTTTTAGATTAGGAGATGGATTTGTTGAAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTRTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTTTCCAACCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGTTTTGCGGCCCCTTCTCCCCCCTCCAATCAAAATCTTATGACACTGTAAACAAGTGAATTAGGATGAGCAGCATTCCAGTTGAGAAGAGGATAAAATGTGTTGGAATGTGCTCACTTCAATGTGAATTCTAACCTGACTCTGACACTGAATTAGTGTATAAAGATGCACAAACAGCCTTTTGCAGAACGCTTCTTTTTCTTACAAAAACAAGTAGAAACCAGAAAGCGACAGGAAATCAAGTTGCTCACCTTTTTCTCCTTCTTCAGCGTAGCTCGTTCTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AAGCTT</site>
                <isoschizomers>
                    <enzyme>HindIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGAAGAAAAACATGCTAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTCTAACCGTTTTGTGAGAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>TTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAA</canonical_amplicon>
		<polymorphic_amplicon>TTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTRTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38479</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>137428</contig_pos>
        <strand>+</strand>
        <context>AAWRCWRTCG[G/T]TAAGTACCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCG</left_flank>
        <right_flank>TAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCTAATTTCATGCAGAGAGGGGAAAATAGGAATGTACAGTGAAGAGGAGCAAAAAATTTTCAGATTTTTTTTCAAGAACACGAATGTCTGAAAACCTGAAACATTTCAAATTATCAAATTTACTGGAAAACCTACCAAGGACGCGAATCTCGAGCTGATCGTGACCGGATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGACATTTTTAGATTAGGAGATGGATTTGTTGAAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTTTCCAACCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGTTTTGCGGCCCCTTCTCCCCCCTCCAATCAAAATCTTATGACACTGTAAACAAGTGAATTAGGATGAGCAGCATTCCAGTTGAGAAGAGGATAAAATGTGTTGGAATGTGCTCACTTCAATGTGAATTCTAACCTGACTCTGACACTGAATTAGTGTATAAAGATGCACAAACAGCCTTTTGCAGAACGCTTCTTTTTCTTACAAAAACAAGTAGAAACCAGAAAGCGACAGGAAATCAAGTTGCTCACCTTTTTCTCCTTCTTCAGCGTAGCTCGTTCTTCTTTTT</canonical>
            <polymorphic>ATTCTAATTTCATGCAGAGAGGGGAAAATAGGAATGTACAGTGAAGAGGAGCAAAAAATTTTCAGATTTTTTTTCAAGAACACGAATGTCTGAAAACCTGAAACATTTCAAATTATCAAATTTACTGGAAAACCTACCAAGGACGCGAATCTCGAGCTGATCGTGACCGGATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGACATTTTTAGATTAGGAGATGGATTTGTTGAAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGKTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTTTCCAACCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGTTTTGCGGCCCCTTCTCCCCCCTCCAATCAAAATCTTATGACACTGTAAACAAGTGAATTAGGATGAGCAGCATTCCAGTTGAGAAGAGGATAAAATGTGTTGGAATGTGCTCACTTCAATGTGAATTCTAACCTGACTCTGACACTGAATTAGTGTATAAAGATGCACAAACAGCCTTTTGCAGAACGCTTCTTTTTCTTACAAAAACAAGTAGAAACCAGAAAGCGACAGGAAATCAAGTTGCTCACCTTTTTCTCCTTCTTCAGCGTAGCTCGTTCTTCTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGAAGAAAAACATGCTAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTCTAACCGTTTTGTGAGAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>TTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAA</canonical_amplicon>
		<polymorphic_amplicon>TTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGKTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38480</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>137476</contig_pos>
        <strand>+</strand>
        <context>TAAATCTCAT[G/T]CTACTCTCAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCAT</left_flank>
        <right_flank>CTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGCAAAAAATTTTCAGATTTTTTTTCAAGAACACGAATGTCTGAAAACCTGAAACATTTCAAATTATCAAATTTACTGGAAAACCTACCAAGGACGCGAATCTCGAGCTGATCGTGACCGGATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGACATTTTTAGATTAGGAGATGGATTTGTTGAAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTTTCCAACCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGTTTTGCGGCCCCTTCTCCCCCCTCCAATCAAAATCTTATGACACTGTAAACAAGTGAATTAGGATGAGCAGCATTCCAGTTGAGAAGAGGATAAAATGTGTTGGAATGTGCTCACTTCAATGTGAATTCTAACCTGACTCTGACACTGAATTAGTGTATAAAGATGCACAAACAGCCTTTTGCAGAACGCTTCTTTTTCTTACAAAAACAAGTAGAAACCAGAAAGCGACAGGAAATCAAGTTGCTCACCTTTTTCTCCTTCTTCAGCGTAGCTCGTTCTTCTTTTTCACGTTTAGCACGTTCTTTCTCCTCTCTTTTCTTCTCCTTTTCCTGCT</canonical>
            <polymorphic>GAGCAAAAAATTTTCAGATTTTTTTTCAAGAACACGAATGTCTGAAAACCTGAAACATTTCAAATTATCAAATTTACTGGAAAACCTACCAAGGACGCGAATCTCGAGCTGATCGTGACCGGATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGACATTTTTAGATTAGGAGATGGATTTGTTGAAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATKCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTTTCCAACCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGTTTTGCGGCCCCTTCTCCCCCCTCCAATCAAAATCTTATGACACTGTAAACAAGTGAATTAGGATGAGCAGCATTCCAGTTGAGAAGAGGATAAAATGTGTTGGAATGTGCTCACTTCAATGTGAATTCTAACCTGACTCTGACACTGAATTAGTGTATAAAGATGCACAAACAGCCTTTTGCAGAACGCTTCTTTTTCTTACAAAAACAAGTAGAAACCAGAAAGCGACAGGAAATCAAGTTGCTCACCTTTTTCTCCTTCTTCAGCGTAGCTCGTTCTTCTTTTTCACGTTTAGCACGTTCTTTCTCCTCTCTTTTCTTCTCCTTTTCCTGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>503 276 221</canonical_bands>
                <polymorphic_bands>724 276</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGTTTGAAAGTAGCTAAAATTG</pcr_primer_p1>
		<pcr_primer_p2>ACAGTTTTCTTTCGCATCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTTTCCAACCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGT</canonical_amplicon>
		<polymorphic_amplicon>TTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATKCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTTTCCAACCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38481</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>137591</contig_pos>
        <strand>+</strand>
        <context>CTCTTTTCCT[C/T]TCCAAYCTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCT</left_flank>
        <right_flank>TCCAACCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACCGGATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGACATTTTTAGATTAGGAGATGGATTTGTTGAAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTTTCCAACCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGTTTTGCGGCCCCTTCTCCCCCCTCCAATCAAAATCTTATGACACTGTAAACAAGTGAATTAGGATGAGCAGCATTCCAGTTGAGAAGAGGATAAAATGTGTTGGAATGTGCTCACTTCAATGTGAATTCTAACCTGACTCTGACACTGAATTAGTGTATAAAGATGCACAAACAGCCTTTTGCAGAACGCTTCTTTTTCTTACAAAAACAAGTAGAAACCAGAAAGCGACAGGAAATCAAGTTGCTCACCTTTTTCTCCTTCTTCAGCGTAGCTCGTTCTTCTTTTTCACGTTTAGCACGTTCTTTCTCCTCTCTTTTCTTCTCCTTTTCCTGCTCCTTCAACTCTTTTTTGCTCAACGATGGAGAAGCAACGGCAGCTACTCCTACTGGAGCTTCTAGAGCGACTGGTGGAGGAAGTGGAGCGTCCACAATATTCACTTCGAATGGAGA</canonical>
            <polymorphic>TGACCGGATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGACATTTTTAGATTAGGAGATGGATTTGTTGAAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTYTCCAACCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGTTTTGCGGCCCCTTCTCCCCCCTCCAATCAAAATCTTATGACACTGTAAACAAGTGAATTAGGATGAGCAGCATTCCAGTTGAGAAGAGGATAAAATGTGTTGGAATGTGCTCACTTCAATGTGAATTCTAACCTGACTCTGACACTGAATTAGTGTATAAAGATGCACAAACAGCCTTTTGCAGAACGCTTCTTTTTCTTACAAAAACAAGTAGAAACCAGAAAGCGACAGGAAATCAAGTTGCTCACCTTTTTCTCCTTCTTCAGCGTAGCTCGTTCTTCTTTTTCACGTTTAGCACGTTCTTTCTCCTCTCTTTTCTTCTCCTTTTCCTGCTCCTTCAACTCTTTTTTGCTCAACGATGGAGAAGCAACGGCAGCTACTCCTACTGGAGCTTCTAGAGCGACTGGTGGAGGAAGTGGAGCGTCCACAATATTCACTTCGAATGGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGAAGTGTTCGTAAATCTCAT</pcr_primer_p1>
		<pcr_primer_p2>CCTAATTCACTTGTTTACAGTGTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTTTCCAACCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGTTTTGCGGCCCCTTCTCCCCCCTCCAATCAAAATCTTATGACACTGTAAACAAGTGAATTAGG</canonical_amplicon>
		<polymorphic_amplicon>ACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTYTCCAACCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGTTTTGCGGCCCCTTCTCCCCCCTCCAATCAAAATCTTATGACACTGTAAACAAGTGAATTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38482</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>137597</contig_pos>
        <strand>+</strand>
        <context>TCCTYTCCAA[C/T]CTCTTTATGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTTTCCAA</left_flank>
        <right_flank>CTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGTTTTGC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGACATTTTTAGATTAGGAGATGGATTTGTTGAAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTTTCCAACCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGTTTTGCGGCCCCTTCTCCCCCCTCCAATCAAAATCTTATGACACTGTAAACAAGTGAATTAGGATGAGCAGCATTCCAGTTGAGAAGAGGATAAAATGTGTTGGAATGTGCTCACTTCAATGTGAATTCTAACCTGACTCTGACACTGAATTAGTGTATAAAGATGCACAAACAGCCTTTTGCAGAACGCTTCTTTTTCTTACAAAAACAAGTAGAAACCAGAAAGCGACAGGAAATCAAGTTGCTCACCTTTTTCTCCTTCTTCAGCGTAGCTCGTTCTTCTTTTTCACGTTTAGCACGTTCTTTCTCCTCTCTTTTCTTCTCCTTTTCCTGCTCCTTCAACTCTTTTTTGCTCAACGATGGAGAAGCAACGGCAGCTACTCCTACTGGAGCTTCTAGAGCGACTGGTGGAGGAAGTGGAGCGTCCACAATATTCACTTCGAATGGAGAATCTGA</canonical>
            <polymorphic>GATACCTCAACGACAAGGGAGGACGGTTGTCCAACCCGTGAAAGTGACGGAATTTTGGATACGGTCGTTTTGGCAGGGAAACGATGTGTCTTACTCTGAAAGACATTTTTAGATTAGGAGATGGATTTGTTGAAAAATTGAGTTGGAAGAAAAACATGCTAAATTTCAAAGAATGACACTTCCGAGCGGTTTATCTCATTTATGTGAATTTTTACAAAATATTTGTCAACTACAAAACTGAAGCTCTAATTTTGTTTAGTAAAATTACTAAACTTTTCAGACATCTGAAGGCTATTTTGTTTGAAAGTAGCTAAAATTGAAAAGCTTTCGTTAAGTACCGTATACCATTTTTTGTACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTTTCCAAYCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGTTTTGCGGCCCCTTCTCCCCCCTCCAATCAAAATCTTATGACACTGTAAACAAGTGAATTAGGATGAGCAGCATTCCAGTTGAGAAGAGGATAAAATGTGTTGGAATGTGCTCACTTCAATGTGAATTCTAACCTGACTCTGACACTGAATTAGTGTATAAAGATGCACAAACAGCCTTTTGCAGAACGCTTCTTTTTCTTACAAAAACAAGTAGAAACCAGAAAGCGACAGGAAATCAAGTTGCTCACCTTTTTCTCCTTCTTCAGCGTAGCTCGTTCTTCTTTTTCACGTTTAGCACGTTCTTTCTCCTCTCTTTTCTTCTCCTTTTCCTGCTCCTTCAACTCTTTTTTGCTCAACGATGGAGAAGCAACGGCAGCTACTCCTACTGGAGCTTCTAGAGCGACTGGTGGAGGAAGTGGAGCGTCCACAATATTCACTTCGAATGGAGAATCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGAAGTGTTCGTAAATCTCAT</pcr_primer_p1>
		<pcr_primer_p2>CCTAATTCACTTGTTTACAGTGTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTTTCCAACCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGTTTTGCGGCCCCTTCTCCCCCCTCCAATCAAAATCTTATGACACTGTAAACAAGTGAATTAGG</canonical_amplicon>
		<polymorphic_amplicon>ACAGAAGTGTTCGTAAATCTCATGCTACTCTCACAAAACGGTTAGAAAACAACCGGAAGATGCGCAAAAAATGATTCGGAAAAAAAAAGTAAGCCCCCCTCCGGACAAGGTCGTTTCTTATTTCTTCTCTCTTTTCCTTTCCAAYCTCTTTATGCGATTATGTTTGCGAACTGATGCGAAAGAAAACTGTTTTGCGGCCCCTTCTCCCCCCTCCAATCAAAATCTTATGACACTGTAAACAAGTGAATTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38483</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>145282</contig_pos>
        <strand></strand>
        <context>AACatttttt[A/T]aataatgtaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCAATTTTTGCTAGATTATGAGTGTTTGAGGTATTCATAACATTTTTT</left_flank>
        <right_flank>AATAATGTAATTTTATAAATTCGAGAAGAAATCTCATTAATATTAAAAAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATCTCAGAATCTCCGAATCTCAAAATCTCAGAATCTTCGAACCTCAGAATCTCAGAATCTCCGAATCTCATAAATTCAGGATCTAAGGATCTCTGAACCTCAGAATCTTAGAATCTCGTAATTTCTGTTTCACAAAATTCCTGAATTTCAGGGTTTTAGAAGGTCAGACCCTCCGAATCACAGGATTCCTATTGTCTGATCAATAGTGTAACTAGTTGATAGAATTAACAGTAAATTATACCTGTGTCGGTGTGAAAATGGCCATGTACTGTCGGCTGCCAAGCTCTCGAACTCGACATGGCACTCGGCCGCCATTGATCATAATTTCAAGATTGCCGGATCCGGCAGCAGACGCGTCAACTGAAAATTCAAACGGTTTAGGAAAATAGTGCATTTTGATTAGATGATATTTTCAAGAATGAGCCTTTTTATAACTTCCTGTTCTAGTTTCAATTTTTGCTAGATTATGAGTGTTTGAGGTATTCATAACATTTTTTAAATAATGTAATTTTATAAATTCGAGAAGAAATCTCATTAATATTAAAAAATATCAAAACCTTATAAATTAAAGTTCTAGAAACTCGATTCTGAATACTAGATATACAATTTTTGAGATATATCCACTTTTTAAGAGTCAATAGCATAAATCCATAAATGTCATATGTATCGAATTGCCAAAAACGAAATACACCCGCAATAAACTATGAAACCTCTCGCAACTACAACAATCCGCACACAAAACGTCGGGAATCGAAAATCGGAATATACCCGAACAAAAATTGTTTGGAAGAATGGAAGACAATTTCAATGAGACGCGCCAACCACACAAACAACTACGATTCTTGTGTCCTATAGGTATTACTACTACCGTAGAGTTTTCGAGTAACTAAAGAGACAGAAAATAATGATGACATGGGGGAACCATATGACAATAAGTTCCGTGCTGCACTTTTTTTTTCTTCACCTGAACTCTCTATAGCCTCACATTCCGACTTTCA</canonical>
            <polymorphic>GAATCTCAGAATCTCCGAATCTCAAAATCTCAGAATCTTCGAACCTCAGAATCTCAGAATCTCCGAATCTCATAAATTCAGGATCTAAGGATCTCTGAACCTCAGAATCTTAGAATCTCGTAATTTCTGTTTCACAAAATTCCTGAATTTCAGGGTTTTAGAAGGTCAGACCCTCCGAATCACAGGATTCCTATTGTCTGATCAATAGTGTAACTAGTTGATAGAATTAACAGTAAATTATACCTGTGTCGGTGTGAAAATGGCCATGTACTGTCGGCTGCCAAGCTCTCGAACTCGACATGGCACTCGGCCGCCATTGATCATAATTTCAAGATTGCCGGATCCGGCAGCAGACGCGTCAACTGAAAATTCAAACGGTTTAGGAAAATAGTGCATTTTGATTAGATGATATTTTCAAGAATGAGCCTTTTTATAACTTCCTGTTCTAGTTTCAATTTTTGCTAGATTATGAGTGTTTGAGGTATTCATAACATTTTTTWAATAATGTAATTTTATAAATTCGAGAAGAAATCTCATTAATATTAAAAAATATCAAAACCTTATAAATTAAAGTTCTAGAAACTCGATTCTGAATACTAGATATACAATTTTTGAGATATATCCACTTTTTAAGAGTCAATAGCATAAATCCATAAATGTCATATGTATCGAATTGCCAAAAACGAAATACACCCGCAATAAACTATGAAACCTCTCGCAACTACAACAATCCGCACACAAAACGTCGGGAATCGAAAATCGGAATATACCCGAACAAAAATTGTTTGGAAGAATGGAAGACAATTTCAATGAGACGCGCCAACCACACAAACAACTACGATTCTTGTGTCCTATAGGTATTACTACTACCGTAGAGTTTTCGAGTAACTAAAGAGACAGAAAATAATGATGACATGGGGGAACCATATGACAATAAGTTCCGTGCTGCACTTTTTTTTTCTTCACCTGAACTCTCTATAGCCTCACATTCCGACTTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>370 271 227 62 39 25 6</canonical_bands>
                <polymorphic_bands>370 310 227 62 25 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATTTTCAAGAATGAGCCTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTATGGATTTATGCTATTGACTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATATTTTCAAGAATGAGCCTTTTTATAACTTCCTGTTCTAGTTTCAATTTTTGCTAGATTATGAGTGTTTGAGGTATTCATAACATTTTTTAAATAATGTAATTTTATAAATTCGAGAAGAAATCTCATTAATATTAAAAAATATCAAAACCTTATAAATTAAAGTTCTAGAAACTCGATTCTGAATACTAGATATACAATTTTTGAGATATATCCACTTTTTAAGAGTCAATAGCATAAATCCATAAA</canonical_amplicon>
		<polymorphic_amplicon>ATATTTTCAAGAATGAGCCTTTTTATAACTTCCTGTTCTAGTTTCAATTTTTGCTAGATTATGAGTGTTTGAGGTATTCATAACATTTTTTWAATAATGTAATTTTATAAATTCGAGAAGAAATCTCATTAATATTAAAAAATATCAAAACCTTATAAATTAAAGTTCTAGAAACTCGATTCTGAATACTAGATATACAATTTTTGAGATATATCCACTTTTTAAGAGTCAATAGCATAAATCCATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38484</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>145304</contig_pos>
        <strand></strand>
        <context>tttataaatt[C/T]GAGAAGAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTGTTTGAGGTATTCATAACATTTTTTAAATAATGTAATTTTATAAATT</left_flank>
        <right_flank>GAGAAGAAATCTCATTAATATTAAAAAATATCAAAACCTTATAAATTAAA</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAATCTCAGAATCTTCGAACCTCAGAATCTCAGAATCTCCGAATCTCATAAATTCAGGATCTAAGGATCTCTGAACCTCAGAATCTTAGAATCTCGTAATTTCTGTTTCACAAAATTCCTGAATTTCAGGGTTTTAGAAGGTCAGACCCTCCGAATCACAGGATTCCTATTGTCTGATCAATAGTGTAACTAGTTGATAGAATTAACAGTAAATTATACCTGTGTCGGTGTGAAAATGGCCATGTACTGTCGGCTGCCAAGCTCTCGAACTCGACATGGCACTCGGCCGCCATTGATCATAATTTCAAGATTGCCGGATCCGGCAGCAGACGCGTCAACTGAAAATTCAAACGGTTTAGGAAAATAGTGCATTTTGATTAGATGATATTTTCAAGAATGAGCCTTTTTATAACTTCCTGTTCTAGTTTCAATTTTTGCTAGATTATGAGTGTTTGAGGTATTCATAACATTTTTTAAATAATGTAATTTTATAAATTCGAGAAGAAATCTCATTAATATTAAAAAATATCAAAACCTTATAAATTAAAGTTCTAGAAACTCGATTCTGAATACTAGATATACAATTTTTGAGATATATCCACTTTTTAAGAGTCAATAGCATAAATCCATAAATGTCATATGTATCGAATTGCCAAAAACGAAATACACCCGCAATAAACTATGAAACCTCTCGCAACTACAACAATCCGCACACAAAACGTCGGGAATCGAAAATCGGAATATACCCGAACAAAAATTGTTTGGAAGAATGGAAGACAATTTCAATGAGACGCGCCAACCACACAAACAACTACGATTCTTGTGTCCTATAGGTATTACTACTACCGTAGAGTTTTCGAGTAACTAAAGAGACAGAAAATAATGATGACATGGGGGAACCATATGACAATAAGTTCCGTGCTGCACTTTTTTTTTCTTCACCTGAACTCTCTATAGCCTCACATTCCGACTTTCAAGTTGGTTGCATTCGCAAACAT</canonical>
            <polymorphic>CAAAATCTCAGAATCTTCGAACCTCAGAATCTCAGAATCTCCGAATCTCATAAATTCAGGATCTAAGGATCTCTGAACCTCAGAATCTTAGAATCTCGTAATTTCTGTTTCACAAAATTCCTGAATTTCAGGGTTTTAGAAGGTCAGACCCTCCGAATCACAGGATTCCTATTGTCTGATCAATAGTGTAACTAGTTGATAGAATTAACAGTAAATTATACCTGTGTCGGTGTGAAAATGGCCATGTACTGTCGGCTGCCAAGCTCTCGAACTCGACATGGCACTCGGCCGCCATTGATCATAATTTCAAGATTGCCGGATCCGGCAGCAGACGCGTCAACTGAAAATTCAAACGGTTTAGGAAAATAGTGCATTTTGATTAGATGATATTTTCAAGAATGAGCCTTTTTATAACTTCCTGTTCTAGTTTCAATTTTTGCTAGATTATGAGTGTTTGAGGTATTCATAACATTTTTTAAATAATGTAATTTTATAAATTYGAGAAGAAATCTCATTAATATTAAAAAATATCAAAACCTTATAAATTAAAGTTCTAGAAACTCGATTCTGAATACTAGATATACAATTTTTGAGATATATCCACTTTTTAAGAGTCAATAGCATAAATCCATAAATGTCATATGTATCGAATTGCCAAAAACGAAATACACCCGCAATAAACTATGAAACCTCTCGCAACTACAACAATCCGCACACAAAACGTCGGGAATCGAAAATCGGAATATACCCGAACAAAAATTGTTTGGAAGAATGGAAGACAATTTCAATGAGACGCGCCAACCACACAAACAACTACGATTCTTGTGTCCTATAGGTATTACTACTACCGTAGAGTTTTCGAGTAACTAAAGAGACAGAAAATAATGATGACATGGGGGAACCATATGACAATAAGTTCCGTGCTGCACTTTTTTTTTCTTCACCTGAACTCTCTATAGCCTCACATTCCGACTTTCAAGTTGGTTGCATTCGCAAACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>505 222 150 63 52 8</canonical_bands>
                <polymorphic_bands>655 222 63 52 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>250 226 140 128 85 84 63 18 6</canonical_bands>
                <polymorphic_bands>289 250 140 128 85 84 18 6</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>275 171 146 106 86 63 57 54 42</canonical_bands>
                <polymorphic_bands>275 171 160 146 86 63 57 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATTTTCAAGAATGAGCCTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTATGGATTTATGCTATTGACTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATATTTTCAAGAATGAGCCTTTTTATAACTTCCTGTTCTAGTTTCAATTTTTGCTAGATTATGAGTGTTTGAGGTATTCATAACATTTTTTAAATAATGTAATTTTATAAATTCGAGAAGAAATCTCATTAATATTAAAAAATATCAAAACCTTATAAATTAAAGTTCTAGAAACTCGATTCTGAATACTAGATATACAATTTTTGAGATATATCCACTTTTTAAGAGTCAATAGCATAAATCCATAAA</canonical_amplicon>
		<polymorphic_amplicon>ATATTTTCAAGAATGAGCCTTTTTATAACTTCCTGTTCTAGTTTCAATTTTTGCTAGATTATGAGTGTTTGAGGTATTCATAACATTTTTTAAATAATGTAATTTTATAAATTYGAGAAGAAATCTCATTAATATTAAAAAATATCAAAACCTTATAAATTAAAGTTCTAGAAACTCGATTCTGAATACTAGATATACAATTTTTGAGATATATCCACTTTTTAAGAGTCAATAGCATAAATCCATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38485</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>149007</contig_pos>
        <strand>+</strand>
        <context>CATAATTATT[C/G]GAACTTTGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCAATAAACCAGAACATTGAATGGAAAAAGTTTCTTTTTACATAATTATT</left_flank>
        <right_flank>GAACTTTGGAATCCTCATAACATGATTATTTGAGAAGCCTAAAATCTAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATCTTAGAATCACAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCATAATGTCAAAATTTCAGAATCAGAATCTTAGATTCTCAGAATCTCAGAATGTCAAAATCTCAGAATTTCAAAATCTCAGCATGTCAAAATCTCAGAATCTCCGAGATTTCTTAATGTTCAAAGCAAAGAGTAGAATTTAGAAAAAATTTTAACTCAATTGTCAATAAACCAGAACATTGAATGGAAAAAGTTTCTTTTTACATAATTATTTGAACTTTGGAATCCTCATAACATGATTATTTGAGAAGCCTAAAATCTAATGAAAATAAAATCAACAAAATTCAAATTCTTAAATAATGTAAAAAGTTTCAACTCACTTTCAAAAGAGTGATCTGTGTTCAACTTGGACGGTACAATCCGGCGCGGCATGTTTCGGACGTGCACCAAGTCTGGTGCACCGACATTGCACGCAAATGGTGCATCGGGTACTCGTTGATCTGCCAGCATCACATCCACACTGTGTTCGCCTGGAAAACACAACGTAATGAAGTACGAATTTACACCTAATATCATTTTGAATGAATGGCACTGACAAAAAACACTCGAGAGACAAAAAGAGACAAGGGGTGGTCTAATCAAAATCATTAAATTGTTGTGTGCGTGTCTTGTCATCAACAAATAATCGATGATCGGCAGAAGGAACAACAGAAGACGTCGGAAGAAGAAGAAGAAGAACCGTAGGTGAAAAAGAGACAAAACGGAGAGTTTTCG</canonical>
            <polymorphic>AGAATCTTAGAATCACAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAAAATCTCAGAATCTCAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAATCTTAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCTCATAATGTCAAAATTTCAGAATCAGAATCTTAGATTCTCAGAATCTCAGAATGTCAAAATCTCAGAATTTCAAAATCTCAGCATGTCAAAATCTCAGAATCTCCGAGATTTCTTAATGTTCAAAGCAAAGAGTAGAATTTAGAAAAAATTTTAACTCAATTGTCAATAAACCAGAACATTGAATGGAAAAAGTTTCTTTTTACATAATTATTSGAACTTTGGAATCCTCATAACATGATTATTTGAGAAGCCTAAAATCTAATGAAAATAAAATCAACAAAATTCAAATTCTTAAATAATGTAAAAAGTTTCAACTCACTTTCAAAAGAGTGATCTGTGTTCAACTTGGACGGTACAATCCGGCGCGGCATGTTTCGGACGTGCACCAAGTCTGGTGCACCGACATTGCACGCAAATGGTGCATCGGGTACTCGTTGATCTGCCAGCATCACATCCACACTGTGTTCGCCTGGAAAACACAACGTAATGAAGTACGAATTTACACCTAATATCATTTTGAATGAATGGCACTGACAAAAAACACTCGAGAGACAAAAAGAGACAAGGGGTGGTCTAATCAAAATCATTAAATTGTTGTGTGCGTGTCTTGTCATCAACAAATAATCGATGATCGGCAGAAGGAACAACAGAAGACGTCGGAAGAAGAAGAAGAAGAACCGTAGGTGAAAAAGAGACAAAACGGAGAGTTTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCCGAGATTTCTTAATGTTC</pcr_primer_p1>
		<pcr_primer_p2>AAGTTGAACACAGATCACTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCTCCGAGATTTCTTAATGTTCAAAGCAAAGAGTAGAATTTAGAAAAAATTTTAACTCAATTGTCAATAAACCAGAACATTGAATGGAAAAAGTTTCTTTTTACATAATTATTTGAACTTTGGAATCCTCATAACATGATTATTTGAGAAGCCTAAAATCTAATGAAAATAAAATCAACAAAATTCAAATTCTTAAATAATGTAAAAAGTTTCAACTCACTTTCAAAAGAGTGATCTGTGTTCAACTT</canonical_amplicon>
		<polymorphic_amplicon>TCTCCGAGATTTCTTAATGTTCAAAGCAAAGAGTAGAATTTAGAAAAAATTTTAACTCAATTGTCAATAAACCAGAACATTGAATGGAAAAAGTTTCTTTTTACATAATTATTSGAACTTTGGAATCCTCATAACATGATTATTTGAGAAGCCTAAAATCTAATGAAAATAAAATCAACAAAATTCAAATTCTTAAATAATGTAAAAAGTTTCAACTCACTTTCAAAAGAGTGATCTGTGTTCAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38486</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>191785</contig_pos>
        <strand></strand>
        <context>atgtTTAAGA[C/T]TGGAAACTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGA</left_flank>
        <right_flank>TGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAGACAGATTCATTGGGAAGATATACGAATCTCGTATTCGTTAGGGTCAAATTAACGATAAGATGAATCTCTAGTTTTCAAATTTTGTCATATTTTTTTGTTCCAGTGAGAGTATTCAAAAGGGTATATTGCCTTTTGGATCAAAGTAAAAGATAATTTTACAGGTTTTGCTAAATTTTCATCAATACAGTGCAGTCGTATTTATCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTT</canonical>
            <polymorphic>TTCAGACAGATTCATTGGGAAGATATACGAATCTCGTATTCGTTAGGGTCAAATTAACGATAAGATGAATCTCTAGTTTTCAAATTTTGTCATATTTTTTTGTTCCAGTGAGAGTATTCAAAAGGGTATATTGCCTTTTGGATCAAAGTAAAAGATAATTTTACAGGTTTTGCTAAATTTTCATCAATACAGTGCAGTCGTATTTATCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGAYTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCAGGTTCCAAATATTTTATTC</pcr_primer_p1>
		<pcr_primer_p2>TAGGTATAAAACTTTGCGCTTAC</pcr_primer_p2>
		<pcr_amplicon_size>562</pcr_amplicon_size>
		<canonical_amplicon>TCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTA</canonical_amplicon>
		<polymorphic_amplicon>TCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGAYTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38487</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>191799</contig_pos>
        <strand></strand>
        <context>AAACTTGAGG[C/T]GAAGTTTAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGG</left_flank>
        <right_flank>GAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGGAAGATATACGAATCTCGTATTCGTTAGGGTCAAATTAACGATAAGATGAATCTCTAGTTTTCAAATTTTGTCATATTTTTTTGTTCCAGTGAGAGTATTCAAAAGGGTATATTGCCTTTTGGATCAAAGTAAAAGATAATTTTACAGGTTTTGCTAAATTTTCATCAATACAGTGCAGTCGTATTTATCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGAT</canonical>
            <polymorphic>TTGGGAAGATATACGAATCTCGTATTCGTTAGGGTCAAATTAACGATAAGATGAATCTCTAGTTTTCAAATTTTGTCATATTTTTTTGTTCCAGTGAGAGTATTCAAAAGGGTATATTGCCTTTTGGATCAAAGTAAAAGATAATTTTACAGGTTTTGCTAAATTTTCATCAATACAGTGCAGTCGTATTTATCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGYGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCAGGTTCCAAATATTTTATTC</pcr_primer_p1>
		<pcr_primer_p2>TAGGTATAAAACTTTGCGCTTAC</pcr_primer_p2>
		<pcr_amplicon_size>562</pcr_amplicon_size>
		<canonical_amplicon>TCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTA</canonical_amplicon>
		<polymorphic_amplicon>TCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGYGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38488</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>191825</contig_pos>
        <strand></strand>
        <context>TCAAAAAAAA[T/A]TCMAAAACAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAA</left_flank>
        <right_flank>TCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTAGGGTCAAATTAACGATAAGATGAATCTCTAGTTTTCAAATTTTGTCATATTTTTTTGTTCCAGTGAGAGTATTCAAAAGGGTATATTGCCTTTTGGATCAAAGTAAAAGATAATTTTACAGGTTTTGCTAAATTTTCATCAATACAGTGCAGTCGTATTTATCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACC</canonical>
            <polymorphic>CGTTAGGGTCAAATTAACGATAAGATGAATCTCTAGTTTTCAAATTTTGTCATATTTTTTTGTTCCAGTGAGAGTATTCAAAAGGGTATATTGCCTTTTGGATCAAAGTAAAAGATAATTTTACAGGTTTTGCTAAATTTTCATCAATACAGTGCAGTCGTATTTATCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAAWTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>246 180 130 117 93 66 42 33 33 32 15 13</canonical_bands>
                <polymorphic_bands>246 180 130 130 93 66 42 33 33 32 15</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>121 117 99 89 81 74 66 47 40 33 33 32 31 28 24 19 13 12 11 10 8 7 5</canonical_bands>
                <polymorphic_bands>121 117 102 99 81 74 66 47 40 33 33 32 31 28 24 19 12 11 10 8 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCAGGTTCCAAATATTTTATTC</pcr_primer_p1>
		<pcr_primer_p2>TAGGTATAAAACTTTGCGCTTAC</pcr_primer_p2>
		<pcr_amplicon_size>562</pcr_amplicon_size>
		<canonical_amplicon>TCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTA</canonical_amplicon>
		<polymorphic_amplicon>TCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAAWTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38489</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>191828</contig_pos>
        <strand></strand>
        <context>AAAAAAAWTC[A/C]AAAACAAAAt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTC</left_flank>
        <right_flank>AAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGGGTCAAATTAACGATAAGATGAATCTCTAGTTTTCAAATTTTGTCATATTTTTTTGTTCCAGTGAGAGTATTCAAAAGGGTATATTGCCTTTTGGATCAAAGTAAAAGATAATTTTACAGGTTTTGCTAAATTTTCATCAATACAGTGCAGTCGTATTTATCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCACA</canonical>
            <polymorphic>TAGGGTCAAATTAACGATAAGATGAATCTCTAGTTTTCAAATTTTGTCATATTTTTTTGTTCCAGTGAGAGTATTCAAAAGGGTATATTGCCTTTTGGATCAAAGTAAAAGATAATTTTACAGGTTTTGCTAAATTTTCATCAATACAGTGCAGTCGTATTTATCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCMAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCAGGTTCCAAATATTTTATTC</pcr_primer_p1>
		<pcr_primer_p2>TAGGTATAAAACTTTGCGCTTAC</pcr_primer_p2>
		<pcr_amplicon_size>562</pcr_amplicon_size>
		<canonical_amplicon>TCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTA</canonical_amplicon>
		<polymorphic_amplicon>TCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCMAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38490</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>191867</contig_pos>
        <strand></strand>
        <context>aatataaaat[G/T]tcatatcatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAAT</left_flank>
        <right_flank>TCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTTGTCATATTTTTTTGTTCCAGTGAGAGTATTCAAAAGGGTATATTGCCTTTTGGATCAAAGTAAAAGATAATTTTACAGGTTTTGCTAAATTTTCATCAATACAGTGCAGTCGTATTTATCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCACATTTTGATATCTCTCACAGAAATCACTCTAATAGAACGCC</canonical>
            <polymorphic>AATTTTGTCATATTTTTTTGTTCCAGTGAGAGTATTCAAAAGGGTATATTGCCTTTTGGATCAAAGTAAAAGATAATTTTACAGGTTTTGCTAAATTTTCATCAATACAGTGCAGTCGTATTTATCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATKTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCACATTTTGATATCTCTCACAGAAATCACTCTAATAGAACGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCAGGTTCCAAATATTTTATTC</pcr_primer_p1>
		<pcr_primer_p2>TAGGTATAAAACTTTGCGCTTAC</pcr_primer_p2>
		<pcr_amplicon_size>562</pcr_amplicon_size>
		<canonical_amplicon>TCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTA</canonical_amplicon>
		<polymorphic_amplicon>TCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATKTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38491</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>191881</contig_pos>
        <strand></strand>
        <context>tatcatttta[T/A]gtataacrcr</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTA</left_flank>
        <right_flank>GTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGTTCCAGTGAGAGTATTCAAAAGGGTATATTGCCTTTTGGATCAAAGTAAAAGATAATTTTACAGGTTTTGCTAAATTTTCATCAATACAGTGCAGTCGTATTTATCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCACATTTTGATATCTCTCACAGAAATCACTCTAATAGAACGCCATCCGGACCGTCCA</canonical>
            <polymorphic>TTTTTGTTCCAGTGAGAGTATTCAAAAGGGTATATTGCCTTTTGGATCAAAGTAAAAGATAATTTTACAGGTTTTGCTAAATTTTCATCAATACAGTGCAGTCGTATTTATCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTAWGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCACATTTTGATATCTCTCACAGAAATCACTCTAATAGAACGCCATCCGGACCGTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCAGGTTCCAAATATTTTATTC</pcr_primer_p1>
		<pcr_primer_p2>TAGGTATAAAACTTTGCGCTTAC</pcr_primer_p2>
		<pcr_amplicon_size>562</pcr_amplicon_size>
		<canonical_amplicon>TCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTA</canonical_amplicon>
		<polymorphic_amplicon>TCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTAWGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38492</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>191889</contig_pos>
        <strand></strand>
        <context>tawgtataac[A/G]craaaaattw</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAAC</left_flank>
        <right_flank>CAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGTGAGAGTATTCAAAAGGGTATATTGCCTTTTGGATCAAAGTAAAAGATAATTTTACAGGTTTTGCTAAATTTTCATCAATACAGTGCAGTCGTATTTATCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCACATTTTGATATCTCTCACAGAAATCACTCTAATAGAACGCCATCCGGACCGTCCACTTTGAGC</canonical>
            <polymorphic>CCAGTGAGAGTATTCAAAAGGGTATATTGCCTTTTGGATCAAAGTAAAAGATAATTTTACAGGTTTTGCTAAATTTTCATCAATACAGTGCAGTCGTATTTATCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACRCAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCACATTTTGATATCTCTCACAGAAATCACTCTAATAGAACGCCATCCGGACCGTCCACTTTGAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>232 166 124 120 90 84 46 35 34 29 17 9 8 6</canonical_bands>
                <polymorphic_bands>232 201 124 120 90 84 46 34 29 17 9 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCAGGTTCCAAATATTTTATTC</pcr_primer_p1>
		<pcr_primer_p2>TAGGTATAAAACTTTGCGCTTAC</pcr_primer_p2>
		<pcr_amplicon_size>562</pcr_amplicon_size>
		<canonical_amplicon>TCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTA</canonical_amplicon>
		<polymorphic_amplicon>TCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACRCAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38493</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>191891</contig_pos>
        <strand></strand>
        <context>wgtataacrc[A/G]aaaaattwca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACAC</left_flank>
        <right_flank>AAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGAGAGTATTCAAAAGGGTATATTGCCTTTTGGATCAAAGTAAAAGATAATTTTACAGGTTTTGCTAAATTTTCATCAATACAGTGCAGTCGTATTTATCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCACATTTTGATATCTCTCACAGAAATCACTCTAATAGAACGCCATCCGGACCGTCCACTTTGAGCCT</canonical>
            <polymorphic>AGTGAGAGTATTCAAAAGGGTATATTGCCTTTTGGATCAAAGTAAAAGATAATTTTACAGGTTTTGCTAAATTTTCATCAATACAGTGCAGTCGTATTTATCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACRAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCACATTTTGATATCTCTCACAGAAATCACTCTAATAGAACGCCATCCGGACCGTCCACTTTGAGCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCAGGTTCCAAATATTTTATTC</pcr_primer_p1>
		<pcr_primer_p2>TAGGTATAAAACTTTGCGCTTAC</pcr_primer_p2>
		<pcr_amplicon_size>562</pcr_amplicon_size>
		<canonical_amplicon>TCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTA</canonical_amplicon>
		<polymorphic_amplicon>TCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACRAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38494</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>191899</contig_pos>
        <strand></strand>
        <context>rcraaaaatt[A/T]caaattctga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATT</left_flank>
        <right_flank>CAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTCAAAAGGGTATATTGCCTTTTGGATCAAAGTAAAAGATAATTTTACAGGTTTTGCTAAATTTTCATCAATACAGTGCAGTCGTATTTATCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCACATTTTGATATCTCTCACAGAAATCACTCTAATAGAACGCCATCCGGACCGTCCACTTTGAGCCTAAATATCT</canonical>
            <polymorphic>TATTCAAAAGGGTATATTGCCTTTTGGATCAAAGTAAAAGATAATTTTACAGGTTTTGCTAAATTTTCATCAATACAGTGCAGTCGTATTTATCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTWCAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCACATTTTGATATCTCTCACAGAAATCACTCTAATAGAACGCCATCCGGACCGTCCACTTTGAGCCTAAATATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCAGGTTCCAAATATTTTATTC</pcr_primer_p1>
		<pcr_primer_p2>TAGGTATAAAACTTTGCGCTTAC</pcr_primer_p2>
		<pcr_amplicon_size>562</pcr_amplicon_size>
		<canonical_amplicon>TCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTA</canonical_amplicon>
		<polymorphic_amplicon>TCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTWCAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38495</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>191950</contig_pos>
        <strand></strand>
        <context>gaaaattgcc[T/G]attttacacc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCC</left_flank>
        <right_flank>ATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTTTGCTAAATTTTCATCAATACAGTGCAGTCGTATTTATCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCACATTTTGATATCTCTCACAGAAATCACTCTAATAGAACGCCATCCGGACCGTCCACTTTGAGCCTAAATATCTCACTTCTTTTGAAAGATATCATCAAGTTGTCAACTAATAAAAAGTTTTTCA</canonical>
            <polymorphic>GGTTTTGCTAAATTTTCATCAATACAGTGCAGTCGTATTTATCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCKATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCACATTTTGATATCTCTCACAGAAATCACTCTAATAGAACGCCATCCGGACCGTCCACTTTGAGCCTAAATATCTCACTTCTTTTGAAAGATATCATCAAGTTGTCAACTAATAAAAAGTTTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCAGGTTCCAAATATTTTATTC</pcr_primer_p1>
		<pcr_primer_p2>TAGGTATAAAACTTTGCGCTTAC</pcr_primer_p2>
		<pcr_amplicon_size>562</pcr_amplicon_size>
		<canonical_amplicon>TCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTA</canonical_amplicon>
		<polymorphic_amplicon>TCTCAGGTTCCAAATATTTTATTCTAACAAGGGAACCTTTTAAGTTGACCCTTTAATATGTCCCAACTAATTATACAGGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCKATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38496</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>192068</contig_pos>
        <strand></strand>
        <context>AAAATTGAAC[G/C]AAATGATAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAAC</left_flank>
        <right_flank>AAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCACATTTTGATATCTCTCACAGAAATCACTCTAATAGAACGCCATCCGGACCGTCCACTTTGAGCCTAAATATCTCACTTCTTTTGAAAGATATCATCAAGTTGTCAACTAATAAAAAGTTTTTCATGATATCAGCAACATTATATTAGTTAACTACATTTTGATATCTCTCACAGAAAATGAGATACATGAGCTCACATTTGACGAATCGGGTGGCGTTCTATTAGAGTGTTTACGGTATATT</canonical>
            <polymorphic>GGATGAAAGAACATGTTTGAAAACCTATGTGACCGTTTTCAAAATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACSAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCACATTTTGATATCTCTCACAGAAATCACTCTAATAGAACGCCATCCGGACCGTCCACTTTGAGCCTAAATATCTCACTTCTTTTGAAAGATATCATCAAGTTGTCAACTAATAAAAAGTTTTTCATGATATCAGCAACATTATATTAGTTAACTACATTTTGATATCTCTCACAGAAAATGAGATACATGAGCTCACATTTGACGAATCGGGTGGCGTTCTATTAGAGTGTTTACGGTATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCAGGTTCCAAATATTTTATTC</pcr_primer_p1>
		<pcr_primer_p2>AATTGAATTTCAGGTACCATATCT</pcr_primer_p2>
		<pcr_amplicon_size>828</pcr_amplicon_size>
		<canonical_amplicon>CGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATT</canonical_amplicon>
		<polymorphic_amplicon>CSAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38497</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>192110</contig_pos>
        <strand></strand>
        <context>GAGGAGTCTA[G/C]CAAaaccatc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTA</left_flank>
        <right_flank>CAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCACATTTTGATATCTCTCACAGAAATCACTCTAATAGAACGCCATCCGGACCGTCCACTTTGAGCCTAAATATCTCACTTCTTTTGAAAGATATCATCAAGTTGTCAACTAATAAAAAGTTTTTCATGATATCAGCAACATTATATTAGTTAACTACATTTTGATATCTCTCACAGAAAATGAGATACATGAGCTCACATTTGACGAATCGGGTGGCGTTCTATTAGAGTGTTTACGGTATATTTCTATTTTTCATTTCCAAAAACAAGGACGTAAAGATTTCTTT</canonical>
            <polymorphic>AATCTGCTTGAGAAACTTCTGAAATGCTGAAATTTCTTCCGGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTASCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCACATTTTGATATCTCTCACAGAAATCACTCTAATAGAACGCCATCCGGACCGTCCACTTTGAGCCTAAATATCTCACTTCTTTTGAAAGATATCATCAAGTTGTCAACTAATAAAAAGTTTTTCATGATATCAGCAACATTATATTAGTTAACTACATTTTGATATCTCTCACAGAAAATGAGATACATGAGCTCACATTTGACGAATCGGGTGGCGTTCTATTAGAGTGTTTACGGTATATTTCTATTTTTCATTTCCAAAAACAAGGACGTAAAGATTTCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 224 135 82 56</canonical_bands>
                <polymorphic_bands>559 224 135 82</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAAGCGCAAAGTTTTATACCTA</pcr_primer_p1>
		<pcr_primer_p2>AATTGAATTTCAGGTACCATATCT</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>GTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATT</canonical_amplicon>
		<polymorphic_amplicon>GTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTASCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38498</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>192150</contig_pos>
        <strand></strand>
        <context>tcgattcctt[C/T]gaaagatatg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTT</left_flank>
        <right_flank>GAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCACATTTTGATATCTCTCACAGAAATCACTCTAATAGAACGCCATCCGGACCGTCCACTTTGAGCCTAAATATCTCACTTCTTTTGAAAGATATCATCAAGTTGTCAACTAATAAAAAGTTTTTCATGATATCAGCAACATTATATTAGTTAACTACATTTTGATATCTCTCACAGAAAATGAGATACATGAGCTCACATTTGACGAATCGGGTGGCGTTCTATTAGAGTGTTTACGGTATATTTCTATTTTTCATTTCCAAAAACAAGGACGTAAAGATTTCTTTGTAGTGATTTTGTATTAGGAACGCCTCGAAAAAAAAATAT</canonical>
            <polymorphic>GGTTTAAAATCGGCTATTTTCAAATTTGATTCTGTTCATTCCTAGGAAGTTTTTAAATTTAAAAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTYGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCACATTTTGATATCTCTCACAGAAATCACTCTAATAGAACGCCATCCGGACCGTCCACTTTGAGCCTAAATATCTCACTTCTTTTGAAAGATATCATCAAGTTGTCAACTAATAAAAAGTTTTTCATGATATCAGCAACATTATATTAGTTAACTACATTTTGATATCTCTCACAGAAAATGAGATACATGAGCTCACATTTGACGAATCGGGTGGCGTTCTATTAGAGTGTTTACGGTATATTTCTATTTTTCATTTCCAAAAACAAGGACGTAAAGATTTCTTTGTAGTGATTTTGTATTAGGAACGCCTCGAAAAAAAAATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>487 283 208 13 9</canonical_bands>
                <polymorphic_bands>496 283 208 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCAGTACTGTATTTCCTCTACGA</pcr_primer_p1>
		<pcr_primer_p2>TGGTTAGAATTGAATTTCAGGTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCA</canonical_amplicon>
		<polymorphic_amplicon>GCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTYGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38499</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>192212</contig_pos>
        <strand></strand>
        <context>aataattcat[T/A]agttgraaag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCAT</left_flank>
        <right_flank>AGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCACATTTTGATATCTCTCACAGAAATCACTCTAATAGAACGCCATCCGGACCGTCCACTTTGAGCCTAAATATCTCACTTCTTTTGAAAGATATCATCAAGTTGTCAACTAATAAAAAGTTTTTCATGATATCAGCAACATTATATTAGTTAACTACATTTTGATATCTCTCACAGAAAATGAGATACATGAGCTCACATTTGACGAATCGGGTGGCGTTCTATTAGAGTGTTTACGGTATATTTCTATTTTTCATTTCCAAAAACAAGGACGTAAAGATTTCTTTGTAGTGATTTTGTATTAGGAACGCCTCGAAAAAAAAATATAGATTTGTATCGTGCTTTACAATCTACAATCGAGCTCTGTTGTGCTCGTTCCTCGGATTGCG</canonical>
            <polymorphic>AAATGTCTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATWAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCACATTTTGATATCTCTCACAGAAATCACTCTAATAGAACGCCATCCGGACCGTCCACTTTGAGCCTAAATATCTCACTTCTTTTGAAAGATATCATCAAGTTGTCAACTAATAAAAAGTTTTTCATGATATCAGCAACATTATATTAGTTAACTACATTTTGATATCTCTCACAGAAAATGAGATACATGAGCTCACATTTGACGAATCGGGTGGCGTTCTATTAGAGTGTTTACGGTATATTTCTATTTTTCATTTCCAAAAACAAGGACGTAAAGATTTCTTTGTAGTGATTTTGTATTAGGAACGCCTCGAAAAAAAAATATAGATTTGTATCGTGCTTTACAATCTACAATCGAGCTCTGTTGTGCTCGTTCCTCGGATTGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGTACTGTATTTCCTCTACGA</pcr_primer_p1>
		<pcr_primer_p2>TGGTTAGAATTGAATTTCAGGTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCA</canonical_amplicon>
		<polymorphic_amplicon>GCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATWAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38500</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>192218</contig_pos>
        <strand></strand>
        <context>tcatwagttg[G/A]aaaggttttg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTG</left_flank>
        <right_flank>AAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTT</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCACATTTTGATATCTCTCACAGAAATCACTCTAATAGAACGCCATCCGGACCGTCCACTTTGAGCCTAAATATCTCACTTCTTTTGAAAGATATCATCAAGTTGTCAACTAATAAAAAGTTTTTCATGATATCAGCAACATTATATTAGTTAACTACATTTTGATATCTCTCACAGAAAATGAGATACATGAGCTCACATTTGACGAATCGGGTGGCGTTCTATTAGAGTGTTTACGGTATATTTCTATTTTTCATTTCCAAAAACAAGGACGTAAAGATTTCTTTGTAGTGATTTTGTATTAGGAACGCCTCGAAAAAAAAATATAGATTTGTATCGTGCTTTACAATCTACAATCGAGCTCTGTTGTGCTCGTTCCTCGGATTGCGTTTCCC</canonical>
            <polymorphic>CTGTGTTATACTTAAAATTATCTGAAGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGRAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCACATTTTGATATCTCTCACAGAAATCACTCTAATAGAACGCCATCCGGACCGTCCACTTTGAGCCTAAATATCTCACTTCTTTTGAAAGATATCATCAAGTTGTCAACTAATAAAAAGTTTTTCATGATATCAGCAACATTATATTAGTTAACTACATTTTGATATCTCTCACAGAAAATGAGATACATGAGCTCACATTTGACGAATCGGGTGGCGTTCTATTAGAGTGTTTACGGTATATTTCTATTTTTCATTTCCAAAAACAAGGACGTAAAGATTTCTTTGTAGTGATTTTGTATTAGGAACGCCTCGAAAAAAAAATATAGATTTGTATCGTGCTTTACAATCTACAATCGAGCTCTGTTGTGCTCGTTCCTCGGATTGCGTTTCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGTACTGTATTTCCTCTACGA</pcr_primer_p1>
		<pcr_primer_p2>TGGTTAGAATTGAATTTCAGGTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCA</canonical_amplicon>
		<polymorphic_amplicon>GCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGRAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38501</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>192243</contig_pos>
        <strand></strand>
        <context>tttctacata[G/A]actgagatga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATA</left_flank>
        <right_flank>ACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCACATTTTGATATCTCTCACAGAAATCACTCTAATAGAACGCCATCCGGACCGTCCACTTTGAGCCTAAATATCTCACTTCTTTTGAAAGATATCATCAAGTTGTCAACTAATAAAAAGTTTTTCATGATATCAGCAACATTATATTAGTTAACTACATTTTGATATCTCTCACAGAAAATGAGATACATGAGCTCACATTTGACGAATCGGGTGGCGTTCTATTAGAGTGTTTACGGTATATTTCTATTTTTCATTTCCAAAAACAAGGACGTAAAGATTTCTTTGTAGTGATTTTGTATTAGGAACGCCTCGAAAAAAAAATATAGATTTGTATCGTGCTTTACAATCTACAATCGAGCTCTGTTGTGCTCGTTCCTCGGATTGCGTTTCCCAGTTTCATCAGGAGCTAAAGCAGTC</canonical>
            <polymorphic>AGTTTTATAATGTTACTTTTTTCTCAAAAAAATGTTTAAGACTGGAAACTTGAGGCGAAGTTTAAAGCTTTTCAAAAAAAATTCAAAAACAAAATTTTTGAGAGAATTGTTGAAATATAAAATGTCATATCATTTTATGTATAACACAAAAAATTACAAATTCTGAAACCTTCTAGAAGTGGAGAAAATCGAATTTGAAAATTGCCTATTTTACACCGGAAAAATGATTTTTTTGATACTGAAAAAGAAGTTCCAGCATTTTAGAGGTCAGCTTAAATGGTTCGGGGGTAAGCGCAAAGTTTTATACCTAGCTTAAAATTGAACGAAATGATAAGGCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATARACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCACATTTTGATATCTCTCACAGAAATCACTCTAATAGAACGCCATCCGGACCGTCCACTTTGAGCCTAAATATCTCACTTCTTTTGAAAGATATCATCAAGTTGTCAACTAATAAAAAGTTTTTCATGATATCAGCAACATTATATTAGTTAACTACATTTTGATATCTCTCACAGAAAATGAGATACATGAGCTCACATTTGACGAATCGGGTGGCGTTCTATTAGAGTGTTTACGGTATATTTCTATTTTTCATTTCCAAAAACAAGGACGTAAAGATTTCTTTGTAGTGATTTTGTATTAGGAACGCCTCGAAAAAAAAATATAGATTTGTATCGTGCTTTACAATCTACAATCGAGCTCTGTTGTGCTCGTTCCTCGGATTGCGTTTCCCAGTTTCATCAGGAGCTAAAGCAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGTACTGTATTTCCTCTACGA</pcr_primer_p1>
		<pcr_primer_p2>TGGTTAGAATTGAATTTCAGGTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATAGACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCA</canonical_amplicon>
		<polymorphic_amplicon>GCAGTACTGTATTTCCTCTACGAGGAGTCTAGCAAAACCATCAACTTTGAGCTCAATCATCTCGATTCCTTCGAAAGATATGTAAATGTTGTTAACTGATAAAATTTTTGTGATATTATTATAAATAATTCATTAGTTGGAAAGGTTTTGATACTTTCTACATARACTGAGATGATTGAGTCCAAAGTTTACAATTTGCGTGAGCTTCTATTAAAGGAGATATGGTACCTGAAATTCAATTCTAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38502</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>200951</contig_pos>
        <strand>+</strand>
        <context>ttttttttac[A/G]aaatataatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGAAAAAGTGGTTCTGAAAGTGCAACAATACAAATGCTCTTTTTTTTAC</left_flank>
        <right_flank>AAATATAATTTTAATATTCTTATCTACAGTATTCTAGAAAAAATCAGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAGAGAATGCTCAAAGATAACACATTTGTTCCATTAAATTCTACACATCACACTTCAGTTCAAACTACTCATTTTAGATTTTTTTGTCATCAACATAAAATTTGAAGTTCACGTTCCCAGTGTTCCACCTGATCCCCCTGAGCCAGTAAAACAGTCAAAAACTCACACAGTTGTGTGCCAAGTCCGTCACCAATAGCAGCAGACATCAACGGCGCCGATGCAAGGACCGCCGAAGGCACCGACGTTTTCCGGCTTCCATTTGATGCTGAAATGTGATATTTTGACACTTGGGGCTTTTCAAAAAACAAATAATGGCATGGGGAGGGCAATAAAGCAAAAATTGTCTGAAATTCGTTTTTGAAAGTATAAGGAAATGTAGGACAAGAGGTTTTTTTTGGATTACTGTATATCTAGTTTAGGAGACTACAGAGAAATAACCCTTTATTAGAGAAAAAGTGGTTCTGAAAGTGCAACAATACAAATGCTCTTTTTTTTACAAAATATAATTTTAATATTCTTATCTACAGTATTCTAGAAAAAATCAGATTATGAATTTTTCTGTGGAAGATAGTCAACCTTAGAATCCTGAAAAAAGTATTCCAGAATTTTTCGAACTTCCTGAAATTCAGAGTATACTAAACAGAGTCAGATCTTCATTTTCATTAATCTTAGAATTTTGGGTGCTTTTTGGTTATGAAGAGCATATATAATCAGAAAGGAAACTGGAAAAGAAATTGTCAATTATGAAAATGAAGTTCTACTTCTTTTTATTAAAACCTGGAATTTTCAAAGCCGTGGGAATATTCCGAAATTGACCATGTTAACTGATAAGGTTCAAATTTCACTGAATAAGTTCAAAATTTTATAATTCCAAATGTTCGCGGGAGTCAAAATCAAGTTACTGTAACCTGATGTAATAAGCTGGTGTAGCTACAGTAACCTGATACCAAACTCACTTGTTGAACTGTTGCTGAAGAGCCGGACGACGGAACGGTGTT</canonical>
            <polymorphic>CTCAGAGAATGCTCAAAGATAACACATTTGTTCCATTAAATTCTACACATCACACTTCAGTTCAAACTACTCATTTTAGATTTTTTTGTCATCAACATAAAATTTGAAGTTCACGTTCCCAGTGTTCCACCTGATCCCCCTGAGCCAGTAAAACAGTCAAAAACTCACACAGTTGTGTGCCAAGTCCGTCACCAATAGCAGCAGACATCAACGGCGCCGATGCAAGGACCGCCGAAGGCACCGACGTTTTCCGGCTTCCATTTGATGCTGAAATGTGATATTTTGACACTTGGGGCTTTTCAAAAAACAAATAATGGCATGGGGAGGGCAATAAAGCAAAAATTGTCTGAAATTCGTTTTTGAAAGTATAAGGAAATGTAGGACAAGAGGTTTTTTTTGGATTACTGTATATCTAGTTTAGGAGACTACAGAGAAATAACCCTTTATTAGAGAAAAAGTGGTTCTGAAAGTGCAACAATACAAATGCTCTTTTTTTTACRAAATATAATTTTAATATTCTTATCTACAGTATTCTAGAAAAAATCAGATTATGAATTTTTCTGTGGAAGATAGTCAACCTTAGAATCCTGAAAAAAGTATTCCAGAATTTTTCGAACTTCCTGAAATTCAGAGTATACTAAACAGAGTCAGATCTTCATTTTCATTAATCTTAGAATTTTGGGTGCTTTTTGGTTATGAAGAGCATATATAATCAGAAAGGAAACTGGAAAAGAAATTGTCAATTATGAAAATGAAGTTCTACTTCTTTTTATTAAAACCTGGAATTTTCAAAGCCGTGGGAATATTCCGAAATTGACCATGTTAACTGATAAGGTTCAAATTTCACTGAATAAGTTCAAAATTTTATAATTCCAAATGTTCGCGGGAGTCAAAATCAAGTTACTGTAACCTGATGTAATAAGCTGGTGTAGCTACAGTAACCTGATACCAAACTCACTTGTTGAACTGTTGCTGAAGAGCCGGACGACGGAACGGTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCTTTATTAGAGAAAAAGTGGT</pcr_primer_p1>
		<pcr_primer_p2>AAAGCACCCAAAATTCTAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCCTTTATTAGAGAAAAAGTGGTTCTGAAAGTGCAACAATACAAATGCTCTTTTTTTTACAAAATATAATTTTAATATTCTTATCTACAGTATTCTAGAAAAAATCAGATTATGAATTTTTCTGTGGAAGATAGTCAACCTTAGAATCCTGAAAAAAGTATTCCAGAATTTTTCGAACTTCCTGAAATTCAGAGTATACTAAACAGAGTCAGATCTTCATTTTCATTAATCTTAGAATTTTGGGTGCTTT</canonical_amplicon>
		<polymorphic_amplicon>CCCTTTATTAGAGAAAAAGTGGTTCTGAAAGTGCAACAATACAAATGCTCTTTTTTTTACRAAATATAATTTTAATATTCTTATCTACAGTATTCTAGAAAAAATCAGATTATGAATTTTTCTGTGGAAGATAGTCAACCTTAGAATCCTGAAAAAAGTATTCCAGAATTTTTCGAACTTCCTGAAATTCAGAGTATACTAAACAGAGTCAGATCTTCATTTTCATTAATCTTAGAATTTTGGGTGCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38503</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>230036</contig_pos>
        <strand>+</strand>
        <context>AATTTTCAAC[A/C]AAAAAAAACA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATCTGGTATTATCCTGTATTTCAAAGCCCACCTATCAAGAATTTTCAAC</left_flank>
        <right_flank>AAAAAAAACACCATATCCCTGTTTTTCTGGTTTTTTAGTCTTCTCGATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTCCCAAGAAACCCAAATTTAAAATAGGACATTCTATTGATTGCAGGATTTTTGGTACCGGACCTTCCGGGCCGGTCCTGGGACTTGAAAATTCTGGCGGGCCGGCCTGGAATTCCGGGCTTTGGCGGCCCGGCCTGGAATTTTACAAGTACATATGTCATTACTCATTTTTGTAGTGCAATAAACAGAAACGGAATAATTGAATAGCGCGCTCTTTCGAAATTGTTTAACCTCATTCATTTTTTCTACTGAGATGCTGTAAAAAATAAAAAATGCCGAAGAATCAAAAACCGTCGACTGTGAGCTGACTCATTATGGAAAACATCAAGATTAAACTTGTGAAATAACTTTTTCTTTCGGTTTTTCAAAGAGAATAATGCGGAAATATGAGGTGAGGAGTGGTTTGTTATTTTTTAAAATTTCCACAAAAAACATAAATTTCTGACAAATCTGGTATTATCCTGTATTTCAAAGCCCACCTATCAAGAATTTTCAACAAAAAAAAACACCATATCCCTGTTTTTCTGGTTTTTTAGTCTTCTCGATGACTCTCATGTAAATTGAGTTTGATCTAGCTAACGAAATTAACCATTTTCCTCCTCATTCTGAATTCTGAACTTTTCCCCTATTACTCGCCTGATGTCTCATAATAGTTCGAAGAAGACGTCTACACTGCGTTAGTTTAATTTGCCCTCACTTCTACGCTCACATCACTTTTCTGCACCACAATTTATTTTATATTTCCTCTCCAATATCGCTTCTTCTGACTTTGTTAATCGGTTGAAGACGATAAAAATTGAATGGCACTCTGAATATTCTTATTTTGCAATAGTTTCATCTACAAATCGGATATGTTGTTGCACTCCAGGACGCGAAAACATTTCCGGCTCATCAGTGTCTATAAAAAATATTTTTGAATTCATAAGCTAAGAGTTTTTTTCTTCCGGAAGCACTCTCATAGAGTATGTATATAATTCAAGGAGAGAAAAAAAAGCGAC</canonical>
            <polymorphic>TGTTCCCAAGAAACCCAAATTTAAAATAGGACATTCTATTGATTGCAGGATTTTTGGTACCGGACCTTCCGGGCCGGTCCTGGGACTTGAAAATTCTGGCGGGCCGGCCTGGAATTCCGGGCTTTGGCGGCCCGGCCTGGAATTTTACAAGTACATATGTCATTACTCATTTTTGTAGTGCAATAAACAGAAACGGAATAATTGAATAGCGCGCTCTTTCGAAATTGTTTAACCTCATTCATTTTTTCTACTGAGATGCTGTAAAAAATAAAAAATGCCGAAGAATCAAAAACCGTCGACTGTGAGCTGACTCATTATGGAAAACATCAAGATTAAACTTGTGAAATAACTTTTTCTTTCGGTTTTTCAAAGAGAATAATGCGGAAATATGAGGTGAGGAGTGGTTTGTTATTTTTTAAAATTTCCACAAAAAACATAAATTTCTGACAAATCTGGTATTATCCTGTATTTCAAAGCCCACCTATCAAGAATTTTCAACMAAAAAAAACACCATATCCCTGTTTTTCTGGTTTTTTAGTCTTCTCGATGACTCTCATGTAAATTGAGTTTGATCTAGCTAACGAAATTAACCATTTTCCTCCTCATTCTGAATTCTGAACTTTTCCCCTATTACTCGCCTGATGTCTCATAATAGTTCGAAGAAGACGTCTACACTGCGTTAGTTTAATTTGCCCTCACTTCTACGCTCACATCACTTTTCTGCACCACAATTTATTTTATATTTCCTCTCCAATATCGCTTCTTCTGACTTTGTTAATCGGTTGAAGACGATAAAAATTGAATGGCACTCTGAATATTCTTATTTTGCAATAGTTTCATCTACAAATCGGATATGTTGTTGCACTCCAGGACGCGAAAACATTTCCGGCTCATCAGTGTCTATAAAAAATATTTTTGAATTCATAAGCTAAGAGTTTTTTTCTTCCGGAAGCACTCTCATAGAGTATGTATATAATTCAAGGAGAGAAAAAAAAGCGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTCATTATGGAAAACATCAAG</pcr_primer_p1>
		<pcr_primer_p2>TGAGAGTCATCGAGAAGACTAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GACTCATTATGGAAAACATCAAGATTAAACTTGTGAAATAACTTTTTCTTTCGGTTTTTCAAAGAGAATAATGCGGAAATATGAGGTGAGGAGTGGTTTGTTATTTTTTAAAATTTCCACAAAAAACATAAATTTCTGACAAATCTGGTATTATCCTGTATTTCAAAGCCCACCTATCAAGAATTTTCAACAAAAAAAAACACCATATCCCTGTTTTTCTGGTTTTTTAGTCTTCTCGATGACTCTCA</canonical_amplicon>
		<polymorphic_amplicon>GACTCATTATGGAAAACATCAAGATTAAACTTGTGAAATAACTTTTTCTTTCGGTTTTTCAAAGAGAATAATGCGGAAATATGAGGTGAGGAGTGGTTTGTTATTTTTTAAAATTTCCACAAAAAACATAAATTTCTGACAAATCTGGTATTATCCTGTATTTCAAAGCCCACCTATCAAGAATTTTCAACMAAAAAAAACACCATATCCCTGTTTTTCTGGTTTTTTAGTCTTCTCGATGACTCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38504</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>230524</contig_pos>
        <strand>+</strand>
        <context>TCAAGGAGAG[A/G]AAAAAAAGCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTCTTCCGGAAGCACTCTCATAGAGTATGTATATAATTCAAGGAGAG</left_flank>
        <right_flank>AAAAAAAGCGACAAGTTTCTAGAATATTACATAAAGCCTCATTTGGTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTTTCAACAAAAAAAAACACCATATCCCTGTTTTTCTGGTTTTTTAGTCTTCTCGATGACTCTCATGTAAATTGAGTTTGATCTAGCTAACGAAATTAACCATTTTCCTCCTCATTCTGAATTCTGAACTTTTCCCCTATTACTCGCCTGATGTCTCATAATAGTTCGAAGAAGACGTCTACACTGCGTTAGTTTAATTTGCCCTCACTTCTACGCTCACATCACTTTTCTGCACCACAATTTATTTTATATTTCCTCTCCAATATCGCTTCTTCTGACTTTGTTAATCGGTTGAAGACGATAAAAATTGAATGGCACTCTGAATATTCTTATTTTGCAATAGTTTCATCTACAAATCGGATATGTTGTTGCACTCCAGGACGCGAAAACATTTCCGGCTCATCAGTGTCTATAAAAAATATTTTTGAATTCATAAGCTAAGAGTTTTTTTCTTCCGGAAGCACTCTCATAGAGTATGTATATAATTCAAGGAGAGAAAAAAAAGCGACAAGTTTCTAGAATATTACATAAAGCCTCATTTGGTTTCATTGTTCTTTTTTTGCTAGTGTTTTTCTCTGAAAGATTTCACAGATAGAAACAATTGTTTACAAAACGGACACACTTTAGTTCTCAGACGGATGAGCTCTTCGGTTACGTAGAATGACTTTAAAGGGTCTGTGACCTCTTATTTTTTGGATTTTTGGTAGTTCTAGGTACCCCTTATTCATGTCTGAGGTTGTTTTCAGAAGTTTGTTTTTGAAATTGACCTATTTTAACAAAAACCCCTAGATCCTCATTGTTATGAACAAAGATTCCGCAACCTCAAAAACTTTTTTTCTAGTTTTTAAAAAATTGTTTTCCTTTCGCCGAAAGTTTGAAGTTTTAGAGCCTTAAAAACACATTTTCTTTTGTGATTGCTTTCAAAATCTTCTCTACCGATTACTTAGCTTGTTTGATCCTTCTTCTGTAACTTTCTGACTAGATTTTCTAGGATATG</canonical>
            <polymorphic>GAATTTTCAACAAAAAAAAACACCATATCCCTGTTTTTCTGGTTTTTTAGTCTTCTCGATGACTCTCATGTAAATTGAGTTTGATCTAGCTAACGAAATTAACCATTTTCCTCCTCATTCTGAATTCTGAACTTTTCCCCTATTACTCGCCTGATGTCTCATAATAGTTCGAAGAAGACGTCTACACTGCGTTAGTTTAATTTGCCCTCACTTCTACGCTCACATCACTTTTCTGCACCACAATTTATTTTATATTTCCTCTCCAATATCGCTTCTTCTGACTTTGTTAATCGGTTGAAGACGATAAAAATTGAATGGCACTCTGAATATTCTTATTTTGCAATAGTTTCATCTACAAATCGGATATGTTGTTGCACTCCAGGACGCGAAAACATTTCCGGCTCATCAGTGTCTATAAAAAATATTTTTGAATTCATAAGCTAAGAGTTTTTTTCTTCCGGAAGCACTCTCATAGAGTATGTATATAATTCAAGGAGAGRAAAAAAAGCGACAAGTTTCTAGAATATTACATAAAGCCTCATTTGGTTTCATTGTTCTTTTTTTGCTAGTGTTTTTCTCTGAAAGATTTCACAGATAGAAACAATTGTTTACAAAACGGACACACTTTAGTTCTCAGACGGATGAGCTCTTCGGTTACGTAGAATGACTTTAAAGGGTCTGTGACCTCTTATTTTTTGGATTTTTGGTAGTTCTAGGTACCCCTTATTCATGTCTGAGGTTGTTTTCAGAAGTTTGTTTTTGAAATTGACCTATTTTAACAAAAACCCCTAGATCCTCATTGTTATGAACAAAGATTCCGCAACCTCAAAAACTTTTTTTCTAGTTTTTAAAAAATTGTTTTCCTTTCGCCGAAAGTTTGAAGTTTTAGAGCCTTAAAAACACATTTTCTTTTGTGATTGCTTTCAAAATCTTCTCTACCGATTACTTAGCTTGTTTGATCCTTCTTCTGTAACTTTCTGACTAGATTTTCTAGGATATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGCAATAGTTTCATCTACAAAT</pcr_primer_p1>
		<pcr_primer_p2>TCTTTCAGAGAAAAACACTAGCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTGCAATAGTTTCATCTACAAATCGGATATGTTGTTGCACTCCAGGACGCGAAAACATTTCCGGCTCATCAGTGTCTATAAAAAATATTTTTGAATTCATAAGCTAAGAGTTTTTTTCTTCCGGAAGCACTCTCATAGAGTATGTATATAATTCAAGGAGAGAAAAAAAAGCGACAAGTTTCTAGAATATTACATAAAGCCTCATTTGGTTTCATTGTTCTTTTTTTGCTAGTGTTTTTCTCTGAAAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTGCAATAGTTTCATCTACAAATCGGATATGTTGTTGCACTCCAGGACGCGAAAACATTTCCGGCTCATCAGTGTCTATAAAAAATATTTTTGAATTCATAAGCTAAGAGTTTTTTTCTTCCGGAAGCACTCTCATAGAGTATGTATATAATTCAAGGAGAGRAAAAAAAGCGACAAGTTTCTAGAATATTACATAAAGCCTCATTTGGTTTCATTGTTCTTTTTTTGCTAGTGTTTTTCTCTGAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38505</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>269401</contig_pos>
        <strand>+</strand>
        <context>TCAATATTAA[A/G]TCGTAGATAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACATCTTTGGGAAGACAACAGCCACTAACAATATTGCTATCAATATTAA</left_flank>
        <right_flank>TCGTAGATAAGGAACACAAGCTGAATTCAGGGAATTTTATAGAGGGATCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAAAACAAAAAAAGAACAAAATGAAATAATGAAAAAGAAGCACCAAGAAGGAAGAGGCGACGACGACACCCGGCAAAAATGTGAGTGATCTTTTTGTGAAATCTCGCTCTACTAAAACATCATACGGTTAGGGGACACATCATCTTGCGAAACTTTTTGGTTGGCCTGAAAAGTGGGTGAGTGTGTGAAGCGGTGAGCCGGAAGTGATCGCGTTTACCTCTTTCAACATGTGCAAGGTCTCGTCGACCTGCGAGATAAACAAAAAATCGATATAGACGACGTGAGTCGTCCAAACTAATGGGGCAAGAAGCAAAGCTAAAAGTAGACTGCATCCGAGGAGTACTGAAAAAGTAGAACTACATTCCCATTTTGAAGTATTCAACAACTCACCTTGATCAGTCCCAAATGGAATATCTTCCAGCGGTAACCTGAGCAGCGCCGAAAGAAACATCTTTGGGAAGACAACAGCCACTAACAATATTGCTATCAATATTAAGTCGTAGATAAGGAACACAAGCTGAATTCAGGGAATTTTATAGAGGGATCGAGTAGATTAAAAAACTTACTTGTAGTATCACAAAAGGAATCAGACACATTTTGGCACCTCGAAACGCTCCGTAGCATGTTGACATCACTACCGAACCTGGAAGGAATTCGGGTTGAGAATAAGCTAGAAATTTTGTCTGATTCAACTCCAAGAGGTGGTTATTTCAAAACAAGTTAGAAACTGGTAAATACAGTACCGGAATATACAAATTCGAATTTCTTTGAATTATAGGATATTTTGTCTGAAAAGACTCAATTTTAAGTTCTAACTGAACAAATTGACCTTTATTCAAATAGTTAGAAGATAAAACAAGTTTGAGTCTTGTAATTTGCAAAAAAGGTAGTTCTAGGCGAAATTTCAAATTTTCAATAACCCCTTCTTCTTCTTCAGCCTACCTAATATTATCACAGAAAACATGACGGATGTGGCGTTGCCAAAAAAAGAGATGAA</canonical>
            <polymorphic>CAAAAAAACAAAAAAAGAACAAAATGAAATAATGAAAAAGAAGCACCAAGAAGGAAGAGGCGACGACGACACCCGGCAAAAATGTGAGTGATCTTTTTGTGAAATCTCGCTCTACTAAAACATCATACGGTTAGGGGACACATCATCTTGCGAAACTTTTTGGTTGGCCTGAAAAGTGGGTGAGTGTGTGAAGCGGTGAGCCGGAAGTGATCGCGTTTACCTCTTTCAACATGTGCAAGGTCTCGTCGACCTGCGAGATAAACAAAAAATCGATATAGACGACGTGAGTCGTCCAAACTAATGGGGCAAGAAGCAAAGCTAAAAGTAGACTGCATCCGAGGAGTACTGAAAAAGTAGAACTACATTCCCATTTTGAAGTATTCAACAACTCACCTTGATCAGTCCCAAATGGAATATCTTCCAGCGGTAACCTGAGCAGCGCCGAAAGAAACATCTTTGGGAAGACAACAGCCACTAACAATATTGCTATCAATATTAARTCGTAGATAAGGAACACAAGCTGAATTCAGGGAATTTTATAGAGGGATCGAGTAGATTAAAAAACTTACTTGTAGTATCACAAAAGGAATCAGACACATTTTGGCACCTCGAAACGCTCCGTAGCATGTTGACATCACTACCGAACCTGGAAGGAATTCGGGTTGAGAATAAGCTAGAAATTTTGTCTGATTCAACTCCAAGAGGTGGTTATTTCAAAACAAGTTAGAAACTGGTAAATACAGTACCGGAATATACAAATTCGAATTTCTTTGAATTATAGGATATTTTGTCTGAAAAGACTCAATTTTAAGTTCTAACTGAACAAATTGACCTTTATTCAAATAGTTAGAAGATAAAACAAGTTTGAGTCTTGTAATTTGCAAAAAAGGTAGTTCTAGGCGAAATTTCAAATTTTCAATAACCCCTTCTTCTTCTTCAGCCTACCTAATATTATCACAGAAAACATGACGGATGTGGCGTTGCCAAAAAAAGAGATGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGAACTACATTCCCATTTTGA</pcr_primer_p1>
		<pcr_primer_p2>GTGTCTGATTCCTTTTGTGATAC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GTAGAACTACATTCCCATTTTGAAGTATTCAACAACTCACCTTGATCAGTCCCAAATGGAATATCTTCCAGCGGTAACCTGAGCAGCGCCGAAAGAAACATCTTTGGGAAGACAACAGCCACTAACAATATTGCTATCAATATTAAGTCGTAGATAAGGAACACAAGCTGAATTCAGGGAATTTTATAGAGGGATCGAGTAGATTAAAAAACTTACTTGTAGTATCACAAAAGGAATCAGACAC</canonical_amplicon>
		<polymorphic_amplicon>GTAGAACTACATTCCCATTTTGAAGTATTCAACAACTCACCTTGATCAGTCCCAAATGGAATATCTTCCAGCGGTAACCTGAGCAGCGCCGAAAGAAACATCTTTGGGAAGACAACAGCCACTAACAATATTGCTATCAATATTAARTCGTAGATAAGGAACACAAGCTGAATTCAGGGAATTTTATAGAGGGATCGAGTAGATTAAAAAACTTACTTGTAGTATCACAAAAGGAATCAGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38506</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>269571</contig_pos>
        <strand>+</strand>
        <context>GGGTTGAGAA[C/T]AAGCTAGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTAGCATGTTGACATCACTACCGAACCTGGAAGGAATTCGGGTTGAGAA</left_flank>
        <right_flank>AAGCTAGAAATTTTGTCTGATTCAACTCCAAGAGGTGGTTATTTCAAAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAGTGGGTGAGTGTGTGAAGCGGTGAGCCGGAAGTGATCGCGTTTACCTCTTTCAACATGTGCAAGGTCTCGTCGACCTGCGAGATAAACAAAAAATCGATATAGACGACGTGAGTCGTCCAAACTAATGGGGCAAGAAGCAAAGCTAAAAGTAGACTGCATCCGAGGAGTACTGAAAAAGTAGAACTACATTCCCATTTTGAAGTATTCAACAACTCACCTTGATCAGTCCCAAATGGAATATCTTCCAGCGGTAACCTGAGCAGCGCCGAAAGAAACATCTTTGGGAAGACAACAGCCACTAACAATATTGCTATCAATATTAAGTCGTAGATAAGGAACACAAGCTGAATTCAGGGAATTTTATAGAGGGATCGAGTAGATTAAAAAACTTACTTGTAGTATCACAAAAGGAATCAGACACATTTTGGCACCTCGAAACGCTCCGTAGCATGTTGACATCACTACCGAACCTGGAAGGAATTCGGGTTGAGAATAAGCTAGAAATTTTGTCTGATTCAACTCCAAGAGGTGGTTATTTCAAAACAAGTTAGAAACTGGTAAATACAGTACCGGAATATACAAATTCGAATTTCTTTGAATTATAGGATATTTTGTCTGAAAAGACTCAATTTTAAGTTCTAACTGAACAAATTGACCTTTATTCAAATAGTTAGAAGATAAAACAAGTTTGAGTCTTGTAATTTGCAAAAAAGGTAGTTCTAGGCGAAATTTCAAATTTTCAATAACCCCTTCTTCTTCTTCAGCCTACCTAATATTATCACAGAAAACATGACGGATGTGGCGTTGCCAAAAAAAGAGATGAAGATGACGATGGCGATGTAGAAGGGTATCGTCAACACGCTAATCAACTTGGTGAGTAGCTGCAAAACACAATGGTAAACATAAACAATCATCACTTCTAAAAGCATCATCTCCTCGCTTCTTATTTCTCGAGATGTACAATTTTTCGCCGGACCCCCTTGCTCTGTTATTT</canonical>
            <polymorphic>GAAAAGTGGGTGAGTGTGTGAAGCGGTGAGCCGGAAGTGATCGCGTTTACCTCTTTCAACATGTGCAAGGTCTCGTCGACCTGCGAGATAAACAAAAAATCGATATAGACGACGTGAGTCGTCCAAACTAATGGGGCAAGAAGCAAAGCTAAAAGTAGACTGCATCCGAGGAGTACTGAAAAAGTAGAACTACATTCCCATTTTGAAGTATTCAACAACTCACCTTGATCAGTCCCAAATGGAATATCTTCCAGCGGTAACCTGAGCAGCGCCGAAAGAAACATCTTTGGGAAGACAACAGCCACTAACAATATTGCTATCAATATTAAGTCGTAGATAAGGAACACAAGCTGAATTCAGGGAATTTTATAGAGGGATCGAGTAGATTAAAAAACTTACTTGTAGTATCACAAAAGGAATCAGACACATTTTGGCACCTCGAAACGCTCCGTAGCATGTTGACATCACTACCGAACCTGGAAGGAATTCGGGTTGAGAAYAAGCTAGAAATTTTGTCTGATTCAACTCCAAGAGGTGGTTATTTCAAAACAAGTTAGAAACTGGTAAATACAGTACCGGAATATACAAATTCGAATTTCTTTGAATTATAGGATATTTTGTCTGAAAAGACTCAATTTTAAGTTCTAACTGAACAAATTGACCTTTATTCAAATAGTTAGAAGATAAAACAAGTTTGAGTCTTGTAATTTGCAAAAAAGGTAGTTCTAGGCGAAATTTCAAATTTTCAATAACCCCTTCTTCTTCTTCAGCCTACCTAATATTATCACAGAAAACATGACGGATGTGGCGTTGCCAAAAAAAGAGATGAAGATGACGATGGCGATGTAGAAGGGTATCGTCAACACGCTAATCAACTTGGTGAGTAGCTGCAAAACACAATGGTAAACATAAACAATCATCACTTCTAAAAGCATCATCTCCTCGCTTCTTATTTCTCGAGATGTACAATTTTTCGCCGGACCCCCTTGCTCTGTTATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGATAAGGAACACAAGCTGAAT</pcr_primer_p1>
		<pcr_primer_p2>ATATTCCGGTACTGTATTTACCA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAGATAAGGAACACAAGCTGAATTCAGGGAATTTTATAGAGGGATCGAGTAGATTAAAAAACTTACTTGTAGTATCACAAAAGGAATCAGACACATTTTGGCACCTCGAAACGCTCCGTAGCATGTTGACATCACTACCGAACCTGGAAGGAATTCGGGTTGAGAATAAGCTAGAAATTTTGTCTGATTCAACTCCAAGAGGTGGTTATTTCAAAACAAGTTAGAAACTGGTAAATACAGTACCGGAATAT</canonical_amplicon>
		<polymorphic_amplicon>TAGATAAGGAACACAAGCTGAATTCAGGGAATTTTATAGAGGGATCGAGTAGATTAAAAAACTTACTTGTAGTATCACAAAAGGAATCAGACACATTTTGGCACCTCGAAACGCTCCGTAGCATGTTGACATCACTACCGAACCTGGAAGGAATTCGGGTTGAGAAYAAGCTAGAAATTTTGTCTGATTCAACTCCAAGAGGTGGTTATTTCAAAACAAGTTAGAAACTGGTAAATACAGTACCGGAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38507</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>269686</contig_pos>
        <strand>+</strand>
        <context>ATTATAGGAT[A/C]TTTTGTCTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAAATACAGTACCGGAATATACAAATTCGAATTTCTTTGAATTATAGGAT</left_flank>
        <right_flank>TTTTGTCTGAAAAGACTCAATTTTAAGTTCTAACTGAACAAATTGACCTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTCGTCCAAACTAATGGGGCAAGAAGCAAAGCTAAAAGTAGACTGCATCCGAGGAGTACTGAAAAAGTAGAACTACATTCCCATTTTGAAGTATTCAACAACTCACCTTGATCAGTCCCAAATGGAATATCTTCCAGCGGTAACCTGAGCAGCGCCGAAAGAAACATCTTTGGGAAGACAACAGCCACTAACAATATTGCTATCAATATTAAGTCGTAGATAAGGAACACAAGCTGAATTCAGGGAATTTTATAGAGGGATCGAGTAGATTAAAAAACTTACTTGTAGTATCACAAAAGGAATCAGACACATTTTGGCACCTCGAAACGCTCCGTAGCATGTTGACATCACTACCGAACCTGGAAGGAATTCGGGTTGAGAATAAGCTAGAAATTTTGTCTGATTCAACTCCAAGAGGTGGTTATTTCAAAACAAGTTAGAAACTGGTAAATACAGTACCGGAATATACAAATTCGAATTTCTTTGAATTATAGGATATTTTGTCTGAAAAGACTCAATTTTAAGTTCTAACTGAACAAATTGACCTTTATTCAAATAGTTAGAAGATAAAACAAGTTTGAGTCTTGTAATTTGCAAAAAAGGTAGTTCTAGGCGAAATTTCAAATTTTCAATAACCCCTTCTTCTTCTTCAGCCTACCTAATATTATCACAGAAAACATGACGGATGTGGCGTTGCCAAAAAAAGAGATGAAGATGACGATGGCGATGTAGAAGGGTATCGTCAACACGCTAATCAACTTGGTGAGTAGCTGCAAAACACAATGGTAAACATAAACAATCATCACTTCTAAAAGCATCATCTCCTCGCTTCTTATTTCTCGAGATGTACAATTTTTCGCCGGACCCCCTTGCTCTGTTATTTTTTTATGGCGGTCTATGATCAATGTGTGTTCCACTCACCAAAACATGAACCCTCCGACCACAGTACGAGAAAGGGTCGTAGCCAAGCTCGTGTACTTCGGTTTCGCGTTGATTCA</canonical>
            <polymorphic>GAGTCGTCCAAACTAATGGGGCAAGAAGCAAAGCTAAAAGTAGACTGCATCCGAGGAGTACTGAAAAAGTAGAACTACATTCCCATTTTGAAGTATTCAACAACTCACCTTGATCAGTCCCAAATGGAATATCTTCCAGCGGTAACCTGAGCAGCGCCGAAAGAAACATCTTTGGGAAGACAACAGCCACTAACAATATTGCTATCAATATTAAGTCGTAGATAAGGAACACAAGCTGAATTCAGGGAATTTTATAGAGGGATCGAGTAGATTAAAAAACTTACTTGTAGTATCACAAAAGGAATCAGACACATTTTGGCACCTCGAAACGCTCCGTAGCATGTTGACATCACTACCGAACCTGGAAGGAATTCGGGTTGAGAATAAGCTAGAAATTTTGTCTGATTCAACTCCAAGAGGTGGTTATTTCAAAACAAGTTAGAAACTGGTAAATACAGTACCGGAATATACAAATTCGAATTTCTTTGAATTATAGGATMTTTTGTCTGAAAAGACTCAATTTTAAGTTCTAACTGAACAAATTGACCTTTATTCAAATAGTTAGAAGATAAAACAAGTTTGAGTCTTGTAATTTGCAAAAAAGGTAGTTCTAGGCGAAATTTCAAATTTTCAATAACCCCTTCTTCTTCTTCAGCCTACCTAATATTATCACAGAAAACATGACGGATGTGGCGTTGCCAAAAAAAGAGATGAAGATGACGATGGCGATGTAGAAGGGTATCGTCAACACGCTAATCAACTTGGTGAGTAGCTGCAAAACACAATGGTAAACATAAACAATCATCACTTCTAAAAGCATCATCTCCTCGCTTCTTATTTCTCGAGATGTACAATTTTTCGCCGGACCCCCTTGCTCTGTTATTTTTTTATGGCGGTCTATGATCAATGTGTGTTCCACTCACCAAAACATGAACCCTCCGACCACAGTACGAGAAAGGGTCGTAGCCAAGCTCGTGTACTTCGGTTTCGCGTTGATTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCTGATTCAACTCCAAGAG</pcr_primer_p1>
		<pcr_primer_p2>AGAAGAAGGGGTTATTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTCTGATTCAACTCCAAGAGGTGGTTATTTCAAAACAAGTTAGAAACTGGTAAATACAGTACCGGAATATACAAATTCGAATTTCTTTGAATTATAGGATATTTTGTCTGAAAAGACTCAATTTTAAGTTCTAACTGAACAAATTGACCTTTATTCAAATAGTTAGAAGATAAAACAAGTTTGAGTCTTGTAATTTGCAAAAAAGGTAGTTCTAGGCGAAATTTCAAATTTTCAATAACCCCTTCTTCT</canonical_amplicon>
		<polymorphic_amplicon>TGTCTGATTCAACTCCAAGAGGTGGTTATTTCAAAACAAGTTAGAAACTGGTAAATACAGTACCGGAATATACAAATTCGAATTTCTTTGAATTATAGGATMTTTTGTCTGAAAAGACTCAATTTTAAGTTCTAACTGAACAAATTGACCTTTATTCAAATAGTTAGAAGATAAAACAAGTTTGAGTCTTGTAATTTGCAAAAAAGGTAGTTCTAGGCGAAATTTCAAATTTTCAATAACCCCTTCTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38508</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>269737</contig_pos>
        <strand>+</strand>
        <context>AATTGACCTT[C/T]ATTCAAATAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGTCTGAAAAGACTCAATTTTAAGTTCTAACTGAACAAATTGACCTT</left_flank>
        <right_flank>ATTCAAATAGTTAGAAGATAAAACAAGTTTGAGTCTTGTAATTTGCAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGGAGTACTGAAAAAGTAGAACTACATTCCCATTTTGAAGTATTCAACAACTCACCTTGATCAGTCCCAAATGGAATATCTTCCAGCGGTAACCTGAGCAGCGCCGAAAGAAACATCTTTGGGAAGACAACAGCCACTAACAATATTGCTATCAATATTAAGTCGTAGATAAGGAACACAAGCTGAATTCAGGGAATTTTATAGAGGGATCGAGTAGATTAAAAAACTTACTTGTAGTATCACAAAAGGAATCAGACACATTTTGGCACCTCGAAACGCTCCGTAGCATGTTGACATCACTACCGAACCTGGAAGGAATTCGGGTTGAGAATAAGCTAGAAATTTTGTCTGATTCAACTCCAAGAGGTGGTTATTTCAAAACAAGTTAGAAACTGGTAAATACAGTACCGGAATATACAAATTCGAATTTCTTTGAATTATAGGATATTTTGTCTGAAAAGACTCAATTTTAAGTTCTAACTGAACAAATTGACCTTTATTCAAATAGTTAGAAGATAAAACAAGTTTGAGTCTTGTAATTTGCAAAAAAGGTAGTTCTAGGCGAAATTTCAAATTTTCAATAACCCCTTCTTCTTCTTCAGCCTACCTAATATTATCACAGAAAACATGACGGATGTGGCGTTGCCAAAAAAAGAGATGAAGATGACGATGGCGATGTAGAAGGGTATCGTCAACACGCTAATCAACTTGGTGAGTAGCTGCAAAACACAATGGTAAACATAAACAATCATCACTTCTAAAAGCATCATCTCCTCGCTTCTTATTTCTCGAGATGTACAATTTTTCGCCGGACCCCCTTGCTCTGTTATTTTTTTATGGCGGTCTATGATCAATGTGTGTTCCACTCACCAAAACATGAACCCTCCGACCACAGTACGAGAAAGGGTCGTAGCCAAGCTCGTGTACTTCGGTTTCGCGTTGATTCACTCGACGTCGCCGCTCGGCTTCGGAGACAAGGAACTCGCTGAAAAATGGGA</canonical>
            <polymorphic>CGAGGAGTACTGAAAAAGTAGAACTACATTCCCATTTTGAAGTATTCAACAACTCACCTTGATCAGTCCCAAATGGAATATCTTCCAGCGGTAACCTGAGCAGCGCCGAAAGAAACATCTTTGGGAAGACAACAGCCACTAACAATATTGCTATCAATATTAAGTCGTAGATAAGGAACACAAGCTGAATTCAGGGAATTTTATAGAGGGATCGAGTAGATTAAAAAACTTACTTGTAGTATCACAAAAGGAATCAGACACATTTTGGCACCTCGAAACGCTCCGTAGCATGTTGACATCACTACCGAACCTGGAAGGAATTCGGGTTGAGAATAAGCTAGAAATTTTGTCTGATTCAACTCCAAGAGGTGGTTATTTCAAAACAAGTTAGAAACTGGTAAATACAGTACCGGAATATACAAATTCGAATTTCTTTGAATTATAGGATATTTTGTCTGAAAAGACTCAATTTTAAGTTCTAACTGAACAAATTGACCTTYATTCAAATAGTTAGAAGATAAAACAAGTTTGAGTCTTGTAATTTGCAAAAAAGGTAGTTCTAGGCGAAATTTCAAATTTTCAATAACCCCTTCTTCTTCTTCAGCCTACCTAATATTATCACAGAAAACATGACGGATGTGGCGTTGCCAAAAAAAGAGATGAAGATGACGATGGCGATGTAGAAGGGTATCGTCAACACGCTAATCAACTTGGTGAGTAGCTGCAAAACACAATGGTAAACATAAACAATCATCACTTCTAAAAGCATCATCTCCTCGCTTCTTATTTCTCGAGATGTACAATTTTTCGCCGGACCCCCTTGCTCTGTTATTTTTTTATGGCGGTCTATGATCAATGTGTGTTCCACTCACCAAAACATGAACCCTCCGACCACAGTACGAGAAAGGGTCGTAGCCAAGCTCGTGTACTTCGGTTTCGCGTTGATTCACTCGACGTCGCCGCTCGGCTTCGGAGACAAGGAACTCGCTGAAAAATGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCGAATTTCTTTGAATTATAGG</pcr_primer_p1>
		<pcr_primer_p2>ATCGTCATCTTCATCTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCGAATTTCTTTGAATTATAGGATATTTTGTCTGAAAAGACTCAATTTTAAGTTCTAACTGAACAAATTGACCTTTATTCAAATAGTTAGAAGATAAAACAAGTTTGAGTCTTGTAATTTGCAAAAAAGGTAGTTCTAGGCGAAATTTCAAATTTTCAATAACCCCTTCTTCTTCTTCAGCCTACCTAATATTATCACAGAAAACATGACGGATGTGGCGTTGCCAAAAAAAGAGATGAAGATGACGAT</canonical_amplicon>
		<polymorphic_amplicon>TTCGAATTTCTTTGAATTATAGGATATTTTGTCTGAAAAGACTCAATTTTAAGTTCTAACTGAACAAATTGACCTTYATTCAAATAGTTAGAAGATAAAACAAGTTTGAGTCTTGTAATTTGCAAAAAAGGTAGTTCTAGGCGAAATTTCAAATTTTCAATAACCCCTTCTTCTTCTTCAGCCTACCTAATATTATCACAGAAAACATGACGGATGTGGCGTTGCCAAAAAAAGAGATGAAGATGACGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38509</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>269756</contig_pos>
        <strand>+</strand>
        <context>AGTTAGAAGA[C/T]AAAACAAGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTAAGTTCTAACTGAACAAATTGACCTTTATTCAAATAGTTAGAAGA</left_flank>
        <right_flank>AAAACAAGTTTGAGTCTTGTAATTTGCAAAAAAGGTAGTTCTAGGCGAAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAACTACATTCCCATTTTGAAGTATTCAACAACTCACCTTGATCAGTCCCAAATGGAATATCTTCCAGCGGTAACCTGAGCAGCGCCGAAAGAAACATCTTTGGGAAGACAACAGCCACTAACAATATTGCTATCAATATTAAGTCGTAGATAAGGAACACAAGCTGAATTCAGGGAATTTTATAGAGGGATCGAGTAGATTAAAAAACTTACTTGTAGTATCACAAAAGGAATCAGACACATTTTGGCACCTCGAAACGCTCCGTAGCATGTTGACATCACTACCGAACCTGGAAGGAATTCGGGTTGAGAATAAGCTAGAAATTTTGTCTGATTCAACTCCAAGAGGTGGTTATTTCAAAACAAGTTAGAAACTGGTAAATACAGTACCGGAATATACAAATTCGAATTTCTTTGAATTATAGGATATTTTGTCTGAAAAGACTCAATTTTAAGTTCTAACTGAACAAATTGACCTTTATTCAAATAGTTAGAAGATAAAACAAGTTTGAGTCTTGTAATTTGCAAAAAAGGTAGTTCTAGGCGAAATTTCAAATTTTCAATAACCCCTTCTTCTTCTTCAGCCTACCTAATATTATCACAGAAAACATGACGGATGTGGCGTTGCCAAAAAAAGAGATGAAGATGACGATGGCGATGTAGAAGGGTATCGTCAACACGCTAATCAACTTGGTGAGTAGCTGCAAAACACAATGGTAAACATAAACAATCATCACTTCTAAAAGCATCATCTCCTCGCTTCTTATTTCTCGAGATGTACAATTTTTCGCCGGACCCCCTTGCTCTGTTATTTTTTTATGGCGGTCTATGATCAATGTGTGTTCCACTCACCAAAACATGAACCCTCCGACCACAGTACGAGAAAGGGTCGTAGCCAAGCTCGTGTACTTCGGTTTCGCGTTGATTCACTCGACGTCGCCGCTCGGCTTCGGAGACAAGGAACTCGCTGAAAAATGGGAATTGAATCGAACAGATCTC</canonical>
            <polymorphic>AGAACTACATTCCCATTTTGAAGTATTCAACAACTCACCTTGATCAGTCCCAAATGGAATATCTTCCAGCGGTAACCTGAGCAGCGCCGAAAGAAACATCTTTGGGAAGACAACAGCCACTAACAATATTGCTATCAATATTAAGTCGTAGATAAGGAACACAAGCTGAATTCAGGGAATTTTATAGAGGGATCGAGTAGATTAAAAAACTTACTTGTAGTATCACAAAAGGAATCAGACACATTTTGGCACCTCGAAACGCTCCGTAGCATGTTGACATCACTACCGAACCTGGAAGGAATTCGGGTTGAGAATAAGCTAGAAATTTTGTCTGATTCAACTCCAAGAGGTGGTTATTTCAAAACAAGTTAGAAACTGGTAAATACAGTACCGGAATATACAAATTCGAATTTCTTTGAATTATAGGATATTTTGTCTGAAAAGACTCAATTTTAAGTTCTAACTGAACAAATTGACCTTTATTCAAATAGTTAGAAGAYAAAACAAGTTTGAGTCTTGTAATTTGCAAAAAAGGTAGTTCTAGGCGAAATTTCAAATTTTCAATAACCCCTTCTTCTTCTTCAGCCTACCTAATATTATCACAGAAAACATGACGGATGTGGCGTTGCCAAAAAAAGAGATGAAGATGACGATGGCGATGTAGAAGGGTATCGTCAACACGCTAATCAACTTGGTGAGTAGCTGCAAAACACAATGGTAAACATAAACAATCATCACTTCTAAAAGCATCATCTCCTCGCTTCTTATTTCTCGAGATGTACAATTTTTCGCCGGACCCCCTTGCTCTGTTATTTTTTTATGGCGGTCTATGATCAATGTGTGTTCCACTCACCAAAACATGAACCCTCCGACCACAGTACGAGAAAGGGTCGTAGCCAAGCTCGTGTACTTCGGTTTCGCGTTGATTCACTCGACGTCGCCGCTCGGCTTCGGAGACAAGGAACTCGCTGAAAAATGGGAATTGAATCGAACAGATCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGTCTGAAAAGACTCAATTT</pcr_primer_p1>
		<pcr_primer_p2>GTTGACGATACCCTTCTACATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTGTCTGAAAAGACTCAATTTTAAGTTCTAACTGAACAAATTGACCTTTATTCAAATAGTTAGAAGATAAAACAAGTTTGAGTCTTGTAATTTGCAAAAAAGGTAGTTCTAGGCGAAATTTCAAATTTTCAATAACCCCTTCTTCTTCTTCAGCCTACCTAATATTATCACAGAAAACATGACGGATGTGGCGTTGCCAAAAAAAGAGATGAAGATGACGATGGCGATGTAGAAGGGTATCGTCAAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGTCTGAAAAGACTCAATTTTAAGTTCTAACTGAACAAATTGACCTTTATTCAAATAGTTAGAAGAYAAAACAAGTTTGAGTCTTGTAATTTGCAAAAAAGGTAGTTCTAGGCGAAATTTCAAATTTTCAATAACCCCTTCTTCTTCTTCAGCCTACCTAATATTATCACAGAAAACATGACGGATGTGGCGTTGCCAAAAAAAGAGATGAAGATGACGATGGCGATGTAGAAGGGTATCGTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38510</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>269771</contig_pos>
        <strand>+</strand>
        <context>CAAGTTTGAG[C/T]CTTGTAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAACAAATTGACCTTTATTCAAATAGTTAGAAGATAAAACAAGTTTGAG</left_flank>
        <right_flank>CTTGTAATTTGCAAAAAAGGTAGTTCTAGGCGAAATTTCAAATTTTCAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGAAGTATTCAACAACTCACCTTGATCAGTCCCAAATGGAATATCTTCCAGCGGTAACCTGAGCAGCGCCGAAAGAAACATCTTTGGGAAGACAACAGCCACTAACAATATTGCTATCAATATTAAGTCGTAGATAAGGAACACAAGCTGAATTCAGGGAATTTTATAGAGGGATCGAGTAGATTAAAAAACTTACTTGTAGTATCACAAAAGGAATCAGACACATTTTGGCACCTCGAAACGCTCCGTAGCATGTTGACATCACTACCGAACCTGGAAGGAATTCGGGTTGAGAATAAGCTAGAAATTTTGTCTGATTCAACTCCAAGAGGTGGTTATTTCAAAACAAGTTAGAAACTGGTAAATACAGTACCGGAATATACAAATTCGAATTTCTTTGAATTATAGGATATTTTGTCTGAAAAGACTCAATTTTAAGTTCTAACTGAACAAATTGACCTTTATTCAAATAGTTAGAAGATAAAACAAGTTTGAGTCTTGTAATTTGCAAAAAAGGTAGTTCTAGGCGAAATTTCAAATTTTCAATAACCCCTTCTTCTTCTTCAGCCTACCTAATATTATCACAGAAAACATGACGGATGTGGCGTTGCCAAAAAAAGAGATGAAGATGACGATGGCGATGTAGAAGGGTATCGTCAACACGCTAATCAACTTGGTGAGTAGCTGCAAAACACAATGGTAAACATAAACAATCATCACTTCTAAAAGCATCATCTCCTCGCTTCTTATTTCTCGAGATGTACAATTTTTCGCCGGACCCCCTTGCTCTGTTATTTTTTTATGGCGGTCTATGATCAATGTGTGTTCCACTCACCAAAACATGAACCCTCCGACCACAGTACGAGAAAGGGTCGTAGCCAAGCTCGTGTACTTCGGTTTCGCGTTGATTCACTCGACGTCGCCGCTCGGCTTCGGAGACAAGGAACTCGCTGAAAAATGGGAATTGAATCGAACAGATCTCTGGTTGACTTTCTCT</canonical>
            <polymorphic>TTTTGAAGTATTCAACAACTCACCTTGATCAGTCCCAAATGGAATATCTTCCAGCGGTAACCTGAGCAGCGCCGAAAGAAACATCTTTGGGAAGACAACAGCCACTAACAATATTGCTATCAATATTAAGTCGTAGATAAGGAACACAAGCTGAATTCAGGGAATTTTATAGAGGGATCGAGTAGATTAAAAAACTTACTTGTAGTATCACAAAAGGAATCAGACACATTTTGGCACCTCGAAACGCTCCGTAGCATGTTGACATCACTACCGAACCTGGAAGGAATTCGGGTTGAGAATAAGCTAGAAATTTTGTCTGATTCAACTCCAAGAGGTGGTTATTTCAAAACAAGTTAGAAACTGGTAAATACAGTACCGGAATATACAAATTCGAATTTCTTTGAATTATAGGATATTTTGTCTGAAAAGACTCAATTTTAAGTTCTAACTGAACAAATTGACCTTTATTCAAATAGTTAGAAGATAAAACAAGTTTGAGYCTTGTAATTTGCAAAAAAGGTAGTTCTAGGCGAAATTTCAAATTTTCAATAACCCCTTCTTCTTCTTCAGCCTACCTAATATTATCACAGAAAACATGACGGATGTGGCGTTGCCAAAAAAAGAGATGAAGATGACGATGGCGATGTAGAAGGGTATCGTCAACACGCTAATCAACTTGGTGAGTAGCTGCAAAACACAATGGTAAACATAAACAATCATCACTTCTAAAAGCATCATCTCCTCGCTTCTTATTTCTCGAGATGTACAATTTTTCGCCGGACCCCCTTGCTCTGTTATTTTTTTATGGCGGTCTATGATCAATGTGTGTTCCACTCACCAAAACATGAACCCTCCGACCACAGTACGAGAAAGGGTCGTAGCCAAGCTCGTGTACTTCGGTTTCGCGTTGATTCACTCGACGTCGCCGCTCGGCTTCGGAGACAAGGAACTCGCTGAAAAATGGGAATTGAATCGAACAGATCTCTGGTTGACTTTCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>413 217 110 102 68 60 30</canonical_bands>
                <polymorphic_bands>481 217 110 102 60 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGTCTGAAAAGACTCAATTT</pcr_primer_p1>
		<pcr_primer_p2>GTTGACGATACCCTTCTACATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTGTCTGAAAAGACTCAATTTTAAGTTCTAACTGAACAAATTGACCTTTATTCAAATAGTTAGAAGATAAAACAAGTTTGAGTCTTGTAATTTGCAAAAAAGGTAGTTCTAGGCGAAATTTCAAATTTTCAATAACCCCTTCTTCTTCTTCAGCCTACCTAATATTATCACAGAAAACATGACGGATGTGGCGTTGCCAAAAAAAGAGATGAAGATGACGATGGCGATGTAGAAGGGTATCGTCAAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGTCTGAAAAGACTCAATTTTAAGTTCTAACTGAACAAATTGACCTTTATTCAAATAGTTAGAAGATAAAACAAGTTTGAGYCTTGTAATTTGCAAAAAAGGTAGTTCTAGGCGAAATTTCAAATTTTCAATAACCCCTTCTTCTTCTTCAGCCTACCTAATATTATCACAGAAAACATGACGGATGTGGCGTTGCCAAAAAAAGAGATGAAGATGACGATGGCGATGTAGAAGGGTATCGTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38511</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>269847</contig_pos>
        <strand>+</strand>
        <context>TTCAGCCTAC[C/T]TAATATTATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTAGGCGAAATTTCAAATTTTCAATAACCCCTTCTTCTTCTTCAGCCTAC</left_flank>
        <right_flank>TAATATTATCACAGAAAACATGACGGATGTGGCGTTGCCAAAAAAAGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAACATCTTTGGGAAGACAACAGCCACTAACAATATTGCTATCAATATTAAGTCGTAGATAAGGAACACAAGCTGAATTCAGGGAATTTTATAGAGGGATCGAGTAGATTAAAAAACTTACTTGTAGTATCACAAAAGGAATCAGACACATTTTGGCACCTCGAAACGCTCCGTAGCATGTTGACATCACTACCGAACCTGGAAGGAATTCGGGTTGAGAATAAGCTAGAAATTTTGTCTGATTCAACTCCAAGAGGTGGTTATTTCAAAACAAGTTAGAAACTGGTAAATACAGTACCGGAATATACAAATTCGAATTTCTTTGAATTATAGGATATTTTGTCTGAAAAGACTCAATTTTAAGTTCTAACTGAACAAATTGACCTTTATTCAAATAGTTAGAAGATAAAACAAGTTTGAGTCTTGTAATTTGCAAAAAAGGTAGTTCTAGGCGAAATTTCAAATTTTCAATAACCCCTTCTTCTTCTTCAGCCTACCTAATATTATCACAGAAAACATGACGGATGTGGCGTTGCCAAAAAAAGAGATGAAGATGACGATGGCGATGTAGAAGGGTATCGTCAACACGCTAATCAACTTGGTGAGTAGCTGCAAAACACAATGGTAAACATAAACAATCATCACTTCTAAAAGCATCATCTCCTCGCTTCTTATTTCTCGAGATGTACAATTTTTCGCCGGACCCCCTTGCTCTGTTATTTTTTTATGGCGGTCTATGATCAATGTGTGTTCCACTCACCAAAACATGAACCCTCCGACCACAGTACGAGAAAGGGTCGTAGCCAAGCTCGTGTACTTCGGTTTCGCGTTGATTCACTCGACGTCGCCGCTCGGCTTCGGAGACAAGGAACTCGCTGAAAAATGGGAATTGAATCGAACAGATCTCTGGTTGACTTTCTCTTGATTTGATTGGCTGGCCTTGTTTTTGAAATTCAGGGAATTCAATAAGTGTGAAAAAAAAGAGTTAAACCCACATT</canonical>
            <polymorphic>AGAAACATCTTTGGGAAGACAACAGCCACTAACAATATTGCTATCAATATTAAGTCGTAGATAAGGAACACAAGCTGAATTCAGGGAATTTTATAGAGGGATCGAGTAGATTAAAAAACTTACTTGTAGTATCACAAAAGGAATCAGACACATTTTGGCACCTCGAAACGCTCCGTAGCATGTTGACATCACTACCGAACCTGGAAGGAATTCGGGTTGAGAATAAGCTAGAAATTTTGTCTGATTCAACTCCAAGAGGTGGTTATTTCAAAACAAGTTAGAAACTGGTAAATACAGTACCGGAATATACAAATTCGAATTTCTTTGAATTATAGGATATTTTGTCTGAAAAGACTCAATTTTAAGTTCTAACTGAACAAATTGACCTTTATTCAAATAGTTAGAAGATAAAACAAGTTTGAGTCTTGTAATTTGCAAAAAAGGTAGTTCTAGGCGAAATTTCAAATTTTCAATAACCCCTTCTTCTTCTTCAGCCTACYTAATATTATCACAGAAAACATGACGGATGTGGCGTTGCCAAAAAAAGAGATGAAGATGACGATGGCGATGTAGAAGGGTATCGTCAACACGCTAATCAACTTGGTGAGTAGCTGCAAAACACAATGGTAAACATAAACAATCATCACTTCTAAAAGCATCATCTCCTCGCTTCTTATTTCTCGAGATGTACAATTTTTCGCCGGACCCCCTTGCTCTGTTATTTTTTTATGGCGGTCTATGATCAATGTGTGTTCCACTCACCAAAACATGAACCCTCCGACCACAGTACGAGAAAGGGTCGTAGCCAAGCTCGTGTACTTCGGTTTCGCGTTGATTCACTCGACGTCGCCGCTCGGCTTCGGAGACAAGGAACTCGCTGAAAAATGGGAATTGAATCGAACAGATCTCTGGTTGACTTTCTCTTGATTTGATTGGCTGGCCTTGTTTTTGAAATTCAGGGAATTCAATAAGTGTGAAAAAAAAGAGTTAAACCCACATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGTCTGAAAAGACTCAATTT</pcr_primer_p1>
		<pcr_primer_p2>GTTGACGATACCCTTCTACATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTGTCTGAAAAGACTCAATTTTAAGTTCTAACTGAACAAATTGACCTTTATTCAAATAGTTAGAAGATAAAACAAGTTTGAGTCTTGTAATTTGCAAAAAAGGTAGTTCTAGGCGAAATTTCAAATTTTCAATAACCCCTTCTTCTTCTTCAGCCTACCTAATATTATCACAGAAAACATGACGGATGTGGCGTTGCCAAAAAAAGAGATGAAGATGACGATGGCGATGTAGAAGGGTATCGTCAAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGTCTGAAAAGACTCAATTTTAAGTTCTAACTGAACAAATTGACCTTTATTCAAATAGTTAGAAGATAAAACAAGTTTGAGTCTTGTAATTTGCAAAAAAGGTAGTTCTAGGCGAAATTTCAAATTTTCAATAACCCCTTCTTCTTCTTCAGCCTACYTAATATTATCACAGAAAACATGACGGATGTGGCGTTGCCAAAAAAAGAGATGAAGATGACGATGGCGATGTAGAAGGGTATCGTCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38512</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>277913</contig_pos>
        <strand>+</strand>
        <context>TCCGAACGCT[C/T]TCTTTGGCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCT</left_flank>
        <right_flank>TCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCAAAAATTGAGAATTTCTAAATTTCTAAATATCCAAAATTTCTGAATTTTTGAATTTCTGAATTTCCAAATATTCTAAATTTCTAAATTTCCGAAAATTTTACATTTTTCAGAATTTTTAAAAATTAAGAGATTCTGAATTTCTGAATTTCCGAAAACTCTGAATTTCTGATTTTCGAAAAATTAATAATTTCTAAATTTCTAAATTTCCGAAAATTCTGAATTTTTGAATTTTTGAAAATTAAAAGATTATACCTTTAATTGGGTCTGAAAAACACGAAAACTCTGGACTGCTCCCTAGAAATGTGTTCTAGAAATTTCTACGCAAAAAAACGCTTCACCAAAAAACAGAATAAAGCAACTTCTCCAGAAGACAAACCTTCACGGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATT</canonical>
            <polymorphic>TTTTCAAAAATTGAGAATTTCTAAATTTCTAAATATCCAAAATTTCTGAATTTTTGAATTTCTGAATTTCCAAATATTCTAAATTTCTAAATTTCCGAAAATTTTACATTTTTCAGAATTTTTAAAAATTAAGAGATTCTGAATTTCTGAATTTCCGAAAACTCTGAATTTCTGATTTTCGAAAAATTAATAATTTCTAAATTTCTAAATTTCCGAAAATTCTGAATTTTTGAATTTTTGAAAATTAAAAGATTATACCTTTAATTGGGTCTGAAAAACACGAAAACTCTGGACTGCTCCCTAGAAATGTGTTCTAGAAATTTCTACGCAAAAAAACGCTTCACCAAAAAACAGAATAAAGCAACTTCTCCAGAAGACAAACCTTCACGGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTYTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAATTCAAATTCGATAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTCTTTTCACATTCACAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>GGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTYTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38513</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>277946</contig_pos>
        <strand>+</strand>
        <context>CTCATTYTCC[A/C]CGAATTATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCC</left_flank>
        <right_flank>CGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCCAAAATTTCTGAATTTTTGAATTTCTGAATTTCCAAATATTCTAAATTTCTAAATTTCCGAAAATTTTACATTTTTCAGAATTTTTAAAAATTAAGAGATTCTGAATTTCTGAATTTCCGAAAACTCTGAATTTCTGATTTTCGAAAAATTAATAATTTCTAAATTTCTAAATTTCCGAAAATTCTGAATTTTTGAATTTTTGAAAATTAAAAGATTATACCTTTAATTGGGTCTGAAAAACACGAAAACTCTGGACTGCTCCCTAGAAATGTGTTCTAGAAATTTCTACGCAAAAAAACGCTTCACCAAAAAACAGAATAAAGCAACTTCTCCAGAAGACAAACCTTCACGGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGA</canonical>
            <polymorphic>TATCCAAAATTTCTGAATTTTTGAATTTCTGAATTTCCAAATATTCTAAATTTCTAAATTTCCGAAAATTTTACATTTTTCAGAATTTTTAAAAATTAAGAGATTCTGAATTTCTGAATTTCCGAAAACTCTGAATTTCTGATTTTCGAAAAATTAATAATTTCTAAATTTCTAAATTTCCGAAAATTCTGAATTTTTGAATTTTTGAAAATTAAAAGATTATACCTTTAATTGGGTCTGAAAAACACGAAAACTCTGGACTGCTCCCTAGAAATGTGTTCTAGAAATTTCTACGCAAAAAAACGCTTCACCAAAAAACAGAATAAAGCAACTTCTCCAGAAGACAAACCTTCACGGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCMCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAAATTCAAATTCGATAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTCTTTTCACATTCACAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>GGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCMCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38514</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>278073</contig_pos>
        <strand>+</strand>
        <context>TTCTAGAAAA[C/G]WTATCAGAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAA</left_flank>
        <right_flank>TTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCTGAATTTCTGATTTTCGAAAAATTAATAATTTCTAAATTTCTAAATTTCCGAAAATTCTGAATTTTTGAATTTTTGAAAATTAAAAGATTATACCTTTAATTGGGTCTGAAAAACACGAAAACTCTGGACTGCTCCCTAGAAATGTGTTCTAGAAATTTCTACGCAAAAAAACGCTTCACCAAAAAACAGAATAAAGCAACTTCTCCAGAAGACAAACCTTCACGGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACCATCAAAAGCAAATCGAGACGAAAAACGAGAGGATGATACTGGATCGGCGAGAAACAACAAATTCTATTGGAACAGCAATTGGTGGAAGTGAATGCTAGAAATGTAATTCT</canonical>
            <polymorphic>ACTCTGAATTTCTGATTTTCGAAAAATTAATAATTTCTAAATTTCTAAATTTCCGAAAATTCTGAATTTTTGAATTTTTGAAAATTAAAAGATTATACCTTTAATTGGGTCTGAAAAACACGAAAACTCTGGACTGCTCCCTAGAAATGTGTTCTAGAAATTTCTACGCAAAAAAACGCTTCACCAAAAAACAGAATAAAGCAACTTCTCCAGAAGACAAACCTTCACGGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAASTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACCATCAAAAGCAAATCGAGACGAAAAACGAGAGGATGATACTGGATCGGCGAGAAACAACAAATTCTATTGGAACAGCAATTGGTGGAAGTGAATGCTAGAAATGTAATTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAAATTGTGAATGTGAAAAGA</pcr_primer_p1>
		<pcr_primer_p2>AAGAGTCAAAAATAACTCACAATG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTT</canonical_amplicon>
		<polymorphic_amplicon>GAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAASTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38515</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>278215</contig_pos>
        <strand>+</strand>
        <context>TCAAGAAGAA[A/C]AATATTTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAA</left_flank>
        <right_flank>AATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAATGTGTTCTAGAAATTTCTACGCAAAAAAACGCTTCACCAAAAAACAGAATAAAGCAACTTCTCCAGAAGACAAACCTTCACGGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACCATCAAAAGCAAATCGAGACGAAAAACGAGAGGATGATACTGGATCGGCGAGAAACAACAAATTCTATTGGAACAGCAATTGGTGGAAGTGAATGCTAGAAATGTAATTCTGTGCTAGGACCACCACAAGAAAAAAAACATGGCCACAAAAAGTTCCATTTACCCAATGAACATTTTTTTTTCTCTTTTCTTTTTCTACTCTATAAGAGAGGACGCGTCTTGAAAACAAAAAAAAAGAGTGAAAGAATCTGAA</canonical>
            <polymorphic>AGAAATGTGTTCTAGAAATTTCTACGCAAAAAAACGCTTCACCAAAAAACAGAATAAAGCAACTTCTCCAGAAGACAAACCTTCACGGAAATTCAAATTCGATAAAACCCCATTGCCCATCCACACCTCGAAAAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAMAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACCATCAAAAGCAAATCGAGACGAAAAACGAGAGGATGATACTGGATCGGCGAGAAACAACAAATTCTATTGGAACAGCAATTGGTGGAAGTGAATGCTAGAAATGTAATTCTGTGCTAGGACCACCACAAGAAAAAAAACATGGCCACAAAAAGTTCCATTTACCCAATGAACATTTTTTTTTCTCTTTTCTTTTTCTACTCTATAAGAGAGGACGCGTCTTGAAAACAAAAAAAAAGAGTGAAAGAATCTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGAATGTGAAAAGAAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAACCAAATAATAAGAGTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAMAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38516</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>278347</contig_pos>
        <strand>+</strand>
        <context>TCYTGAGTGG[A/C]TTTTTTTTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGG</left_flank>
        <right_flank>TTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACCATCAAAAGCAAATCGAGACGAAAAACGAGAGGATGATACTGGATCGGCGAGAAACAACAAATTCTATTGGAACAGCAATTGGTGGAAGTGAATGCTAGAAATGTAATTCTGTGCTAGGACCACCACAAGAAAAAAAACATGGCCACAAAAAGTTCCATTTACCCAATGAACATTTTTTTTTCTCTTTTCTTTTTCTACTCTATAAGAGAGGACGCGTCTTGAAAACAAAAAAAAAGAGTGAAAGAATCTGAAAAAAGGACTTTATAGCTGGAGATGGGGTATGTAGGAGAGGATAAGATGAGATAGAATGTGTCATCAACATAGAAATAGGTACCAGTCTGGTTTAAAGCCGGAAAGCGAGAAAATCGGAAATACCGTTGTTCC</canonical>
            <polymorphic>AAAGGTCATGAAAACATCAATGTTCATTTTTCGAACGAAAACAATCGAAATAATTTCCGAACGCTCTCTTTGGCTTCACAGTGTCTGTCTCATTCTCCCCGAATTATTTTCCACGAAATCAGAAACCGGAAAAGAGAAGAAGAACCCCAAAATTGAATAAGACTTGGGGAAATGAGAAATTGTGAATGTGAAAAGAAGAAAAAAGAAGAAACAATTTCTAGAAAACTTATCAGAATGGTGCATTGTACATGCATGAAGCTATCAGGCAAACTGTGACATATTAAGAAAATTTTCATTATATTTTGTGCCAAAAAATGGAAACAGGCAAAAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGMTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTCACTTATTCAGAAACTTGGCGGAATCTGGAATGCCCAACCATCAAAAGCAAATCGAGACGAAAAACGAGAGGATGATACTGGATCGGCGAGAAACAACAAATTCTATTGGAACAGCAATTGGTGGAAGTGAATGCTAGAAATGTAATTCTGTGCTAGGACCACCACAAGAAAAAAAACATGGCCACAAAAAGTTCCATTTACCCAATGAACATTTTTTTTTCTCTTTTCTTTTTCTACTCTATAAGAGAGGACGCGTCTTGAAAACAAAAAAAAAGAGTGAAAGAATCTGAAAAAAGGACTTTATAGCTGGAGATGGGGTATGTAGGAGAGGATAAGATGAGATAGAATGTGTCATCAACATAGAAATAGGTACCAGTCTGGTTTAAAGCCGGAAAGCGAGAAAATCGGAAATACCGTTGTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGGAAGAATCAGAAGAAAAAG</pcr_primer_p1>
		<pcr_primer_p2>GAACTTTGCGAAATTCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGTTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTC</canonical_amplicon>
		<polymorphic_amplicon>AAAGGAAGAATCAGAAGAAAAAGCAACAATCAAGAAGAAGAATATTTTTCAACAACTGGCCGAGGACAGCATTGTGAGTTATTTTTGACTCTTATTATTTGGTTTTTGAAATTTTTCAAATTTCAAGCGAGCGCCGGAAGAGGTAACGGAAGTTTATGAAATCCTGAGTGGMTTTTTTTTGGAATAATAATTGGTTTTAACCTCAAAAATCACGAAACTTTTAAGTTTTCTCAGAATTTCGCAAAGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38517</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>299838</contig_pos>
        <strand></strand>
        <context>TTTGGATCGG[G/A]AGGAACCACT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACAAAATGTCAATGATGCTTTCATTGAAGAAGAAGTTGATTTTGGATCGG</left_flank>
        <right_flank>AGGAACCACTAAGGCAATTAACATTTCTGGAGCACTGAAGAACATCACCA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATGAGACTGTTCGTCTGGAGTCTAATGAAACTGGTTTGATTCAATTCTTTATTCTTGCTAGAGGACAAATAAAGTGGGCCTGATTTATCTAGTGTTTAACTCTTTTTCAAAACTTCAGTGTCGCGATCTGGATGGACGAGCATATAGTCGAAGGAGTCCAGTATGAAGAGGATAGGGACTTGAGAGAAGCGAGAGGCTTCATTATTTCGCTTCCATTCAAAGTTGTGCAATCGGTCCGCGAAACGAAAATCACTGTCAGATTTAGATTCGGTCGTTATAACAAAACCACTGAGGTTTACGCCAGCACTAATACTCTGGAACCACGTGAGTTACAGTAATCTCGAATTACACGTTTTAATATTTTTCAGCACGCCCACCTACTCTCTATTTGTCCATAATTTTTTCCGAATCTGAAATGGAAGAAGCAAAACGCCTAGAAGGAAACGGACAAAATGTCAATGATGCTTTCATTGAAGAAGAAGTTGATTTTGGATCGGGAGGAACCACTAAGGCAATTAACATTTCTGGAGCACTGAAGAACATCACCAACAGCGCATCGACTATCGAGAGAATTCCGAGACGCCCAAAGGTTCCCGTGTGTGGTGAGTCAAGATTTAAAAAATTTAAACAATCTCAAACTTTTTGTTTATTTCCAGAAAATATCAACCTGAAGAACTTGATTTTCAACCGTATTTCTTTCAACACAACTACCGTTTATGAATCCACCAGTAAGTATTTCGGTGGCCTCATGAAGCTTGCAAAATTTTACAGCGAGCGGTTTCCATGACATCACTATCAAGAAATTCGAAACCGGACAAATCATTTTTGCTGTCTCAGGACCCGGAAATCTGAAGTAAGATATTCACAGTTACACCAAATTTTTTTGAGGTCAACTGGAAATTTCTTACAGAGTTTCGATCTGGTCGACCGTCGAAGAGACTTATGCGGCGAAAACAATGCAAGTGACTAACGGATACGCAGCGTTTTCCTACAAAGGT</canonical>
            <polymorphic>CGATGAGACTGTTCGTCTGGAGTCTAATGAAACTGGTTTGATTCAATTCTTTATTCTTGCTAGAGGACAAATAAAGTGGGCCTGATTTATCTAGTGTTTAACTCTTTTTCAAAACTTCAGTGTCGCGATCTGGATGGACGAGCATATAGTCGAAGGAGTCCAGTATGAAGAGGATAGGGACTTGAGAGAAGCGAGAGGCTTCATTATTTCGCTTCCATTCAAAGTTGTGCAATCGGTCCGCGAAACGAAAATCACTGTCAGATTTAGATTCGGTCGTTATAACAAAACCACTGAGGTTTACGCCAGCACTAATACTCTGGAACCACGTGAGTTACAGTAATCTCGAATTACACGTTTTAATATTTTTCAGCACGCCCACCTACTCTCTATTTGTCCATAATTTTTTCCGAATCTGAAATGGAAGAAGCAAAACGCCTAGAAGGAAACGGACAAAATGTCAATGATGCTTTCATTGAAGAAGAAGTTGATTTTGGATCGGRAGGAACCACTAAGGCAATTAACATTTCTGGAGCACTGAAGAACATCACCAACAGCGCATCGACTATCGAGAGAATTCCGAGACGCCCAAAGGTTCCCGTGTGTGGTGAGTCAAGATTTAAAAAATTTAAACAATCTCAAACTTTTTGTTTATTTCCAGAAAATATCAACCTGAAGAACTTGATTTTCAACCGTATTTCTTTCAACACAACTACCGTTTATGAATCCACCAGTAAGTATTTCGGTGGCCTCATGAAGCTTGCAAAATTTTACAGCGAGCGGTTTCCATGACATCACTATCAAGAAATTCGAAACCGGACAAATCATTTTTGCTGTCTCAGGACCCGGAAATCTGAAGTAAGATATTCACAGTTACACCAAATTTTTTTGAGGTCAACTGGAAATTTCTTACAGAGTTTCGATCTGGTCGACCGTCGAAGAGACTTATGCGGCGAAAACAATGCAAGTGACTAACGGATACGCAGCGTTTTCCTACAAAGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>187 163 155 107 95 49 44 44 40 38 30 25 17 6</canonical_bands>
                <polymorphic_bands>187 185 163 107 95 49 44 44 40 38 25 17 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGAAGGAAACGGACAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATCAAGTTCTTCAGGTTGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAGAAGGAAACGGACAAAATGTCAATGATGCTTTCATTGAAGAAGAAGTTGATTTTGGATCGGGAGGAACCACTAAGGCAATTAACATTTCTGGAGCACTGAAGAACATCACCAACAGCGCATCGACTATCGAGAGAATTCCGAGACGCCCAAAGGTTCCCGTGTGTGGTGAGTCAAGATTTAAAAAATTTAAACAATCTCAAACTTTTTGTTTATTTCCAGAAAATATCAACCTGAAGAACTTGATTT</canonical_amplicon>
		<polymorphic_amplicon>CTAGAAGGAAACGGACAAAATGTCAATGATGCTTTCATTGAAGAAGAAGTTGATTTTGGATCGGRAGGAACCACTAAGGCAATTAACATTTCTGGAGCACTGAAGAACATCACCAACAGCGCATCGACTATCGAGAGAATTCCGAGACGCCCAAAGGTTCCCGTGTGTGGTGAGTCAAGATTTAAAAAATTTAAACAATCTCAAACTTTTTGTTTATTTCCAGAAAATATCAACCTGAAGAACTTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38518</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>299941</contig_pos>
        <strand></strand>
        <context>TTCCCGTGTG[T/C]GGTGAGTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGCGCATCGACTATCGAGAGAATTCCGAGACGCCCAAAGGTTCCCGTGTG</left_flank>
        <right_flank>GGTGAGTCAAGATTTAAAAAATTTAAACAATCTCAAACTTTTTGTTTATT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTTCAAAACTTCAGTGTCGCGATCTGGATGGACGAGCATATAGTCGAAGGAGTCCAGTATGAAGAGGATAGGGACTTGAGAGAAGCGAGAGGCTTCATTATTTCGCTTCCATTCAAAGTTGTGCAATCGGTCCGCGAAACGAAAATCACTGTCAGATTTAGATTCGGTCGTTATAACAAAACCACTGAGGTTTACGCCAGCACTAATACTCTGGAACCACGTGAGTTACAGTAATCTCGAATTACACGTTTTAATATTTTTCAGCACGCCCACCTACTCTCTATTTGTCCATAATTTTTTCCGAATCTGAAATGGAAGAAGCAAAACGCCTAGAAGGAAACGGACAAAATGTCAATGATGCTTTCATTGAAGAAGAAGTTGATTTTGGATCGGGAGGAACCACTAAGGCAATTAACATTTCTGGAGCACTGAAGAACATCACCAACAGCGCATCGACTATCGAGAGAATTCCGAGACGCCCAAAGGTTCCCGTGTGTGGTGAGTCAAGATTTAAAAAATTTAAACAATCTCAAACTTTTTGTTTATTTCCAGAAAATATCAACCTGAAGAACTTGATTTTCAACCGTATTTCTTTCAACACAACTACCGTTTATGAATCCACCAGTAAGTATTTCGGTGGCCTCATGAAGCTTGCAAAATTTTACAGCGAGCGGTTTCCATGACATCACTATCAAGAAATTCGAAACCGGACAAATCATTTTTGCTGTCTCAGGACCCGGAAATCTGAAGTAAGATATTCACAGTTACACCAAATTTTTTTGAGGTCAACTGGAAATTTCTTACAGAGTTTCGATCTGGTCGACCGTCGAAGAGACTTATGCGGCGAAAACAATGCAAGTGACTAACGGATACGCAGCGTTTTCCTACAAAGGTATGAAAATTTAGGTGAAATCTGAAAGATAAGAATTTCAGATGGATACGAGCATGTTGCCGTGGACAAGCTCATTGCCTACATCGAGAATGACCTTGGAGAGCA</canonical>
            <polymorphic>CTTTTTCAAAACTTCAGTGTCGCGATCTGGATGGACGAGCATATAGTCGAAGGAGTCCAGTATGAAGAGGATAGGGACTTGAGAGAAGCGAGAGGCTTCATTATTTCGCTTCCATTCAAAGTTGTGCAATCGGTCCGCGAAACGAAAATCACTGTCAGATTTAGATTCGGTCGTTATAACAAAACCACTGAGGTTTACGCCAGCACTAATACTCTGGAACCACGTGAGTTACAGTAATCTCGAATTACACGTTTTAATATTTTTCAGCACGCCCACCTACTCTCTATTTGTCCATAATTTTTTCCGAATCTGAAATGGAAGAAGCAAAACGCCTAGAAGGAAACGGACAAAATGTCAATGATGCTTTCATTGAAGAAGAAGTTGATTTTGGATCGGGAGGAACCACTAAGGCAATTAACATTTCTGGAGCACTGAAGAACATCACCAACAGCGCATCGACTATCGAGAGAATTCCGAGACGCCCAAAGGTTCCCGTGTGYGGTGAGTCAAGATTTAAAAAATTTAAACAATCTCAAACTTTTTGTTTATTTCCAGAAAATATCAACCTGAAGAACTTGATTTTCAACCGTATTTCTTTCAACACAACTACCGTTTATGAATCCACCAGTAAGTATTTCGGTGGCCTCATGAAGCTTGCAAAATTTTACAGCGAGCGGTTTCCATGACATCACTATCAAGAAATTCGAAACCGGACAAATCATTTTTGCTGTCTCAGGACCCGGAAATCTGAAGTAAGATATTCACAGTTACACCAAATTTTTTTGAGGTCAACTGGAAATTTCTTACAGAGTTTCGATCTGGTCGACCGTCGAAGAGACTTATGCGGCGAAAACAATGCAAGTGACTAACGGATACGCAGCGTTTTCCTACAAAGGTATGAAAATTTAGGTGAAATCTGAAAGATAAGAATTTCAGATGGATACGAGCATGTTGCCGTGGACAAGCTCATTGCCTACATCGAGAATGACCTTGGAGAGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>130 107 99 92 73 53 49 48 47 41 36 26 25 23 21 20 19 18 18 17 13 8 6 4 3 2 2</canonical_bands>
                <polymorphic_bands>130 107 99 92 73 53 49 48 47 41 36 26 25 23 21 20 19 18 18 17 13 8 6 5 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGAAGGAAACGGACAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATCAAGTTCTTCAGGTTGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAGAAGGAAACGGACAAAATGTCAATGATGCTTTCATTGAAGAAGAAGTTGATTTTGGATCGGGAGGAACCACTAAGGCAATTAACATTTCTGGAGCACTGAAGAACATCACCAACAGCGCATCGACTATCGAGAGAATTCCGAGACGCCCAAAGGTTCCCGTGTGTGGTGAGTCAAGATTTAAAAAATTTAAACAATCTCAAACTTTTTGTTTATTTCCAGAAAATATCAACCTGAAGAACTTGATTT</canonical_amplicon>
		<polymorphic_amplicon>CTAGAAGGAAACGGACAAAATGTCAATGATGCTTTCATTGAAGAAGAAGTTGATTTTGGATCGGGAGGAACCACTAAGGCAATTAACATTTCTGGAGCACTGAAGAACATCACCAACAGCGCATCGACTATCGAGAGAATTCCGAGACGCCCAAAGGTTCCCGTGTGYGGTGAGTCAAGATTTAAAAAATTTAAACAATCTCAAACTTTTTGTTTATTTCCAGAAAATATCAACCTGAAGAACTTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38519</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>299965</contig_pos>
        <strand></strand>
        <context>TTAAAAAATT[T/A]AAACAATCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CCGAGACGCCCAAAGGTTCCCGTGTGTGGTGAGTCAAGATTTAAAAAATT</left_flank>
        <right_flank>AAACAATCTCAAACTTTTTGTTTATTTCCAGAAAATATCAACCTGAAGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTGGATGGACGAGCATATAGTCGAAGGAGTCCAGTATGAAGAGGATAGGGACTTGAGAGAAGCGAGAGGCTTCATTATTTCGCTTCCATTCAAAGTTGTGCAATCGGTCCGCGAAACGAAAATCACTGTCAGATTTAGATTCGGTCGTTATAACAAAACCACTGAGGTTTACGCCAGCACTAATACTCTGGAACCACGTGAGTTACAGTAATCTCGAATTACACGTTTTAATATTTTTCAGCACGCCCACCTACTCTCTATTTGTCCATAATTTTTTCCGAATCTGAAATGGAAGAAGCAAAACGCCTAGAAGGAAACGGACAAAATGTCAATGATGCTTTCATTGAAGAAGAAGTTGATTTTGGATCGGGAGGAACCACTAAGGCAATTAACATTTCTGGAGCACTGAAGAACATCACCAACAGCGCATCGACTATCGAGAGAATTCCGAGACGCCCAAAGGTTCCCGTGTGTGGTGAGTCAAGATTTAAAAAATTTAAACAATCTCAAACTTTTTGTTTATTTCCAGAAAATATCAACCTGAAGAACTTGATTTTCAACCGTATTTCTTTCAACACAACTACCGTTTATGAATCCACCAGTAAGTATTTCGGTGGCCTCATGAAGCTTGCAAAATTTTACAGCGAGCGGTTTCCATGACATCACTATCAAGAAATTCGAAACCGGACAAATCATTTTTGCTGTCTCAGGACCCGGAAATCTGAAGTAAGATATTCACAGTTACACCAAATTTTTTTGAGGTCAACTGGAAATTTCTTACAGAGTTTCGATCTGGTCGACCGTCGAAGAGACTTATGCGGCGAAAACAATGCAAGTGACTAACGGATACGCAGCGTTTTCCTACAAAGGTATGAAAATTTAGGTGAAATCTGAAAGATAAGAATTTCAGATGGATACGAGCATGTTGCCGTGGACAAGCTCATTGCCTACATCGAGAATGACCTTGGAGAGCAGTGCTGGTATTATCTCACAATCAA</canonical>
            <polymorphic>ATCTGGATGGACGAGCATATAGTCGAAGGAGTCCAGTATGAAGAGGATAGGGACTTGAGAGAAGCGAGAGGCTTCATTATTTCGCTTCCATTCAAAGTTGTGCAATCGGTCCGCGAAACGAAAATCACTGTCAGATTTAGATTCGGTCGTTATAACAAAACCACTGAGGTTTACGCCAGCACTAATACTCTGGAACCACGTGAGTTACAGTAATCTCGAATTACACGTTTTAATATTTTTCAGCACGCCCACCTACTCTCTATTTGTCCATAATTTTTTCCGAATCTGAAATGGAAGAAGCAAAACGCCTAGAAGGAAACGGACAAAATGTCAATGATGCTTTCATTGAAGAAGAAGTTGATTTTGGATCGGGAGGAACCACTAAGGCAATTAACATTTCTGGAGCACTGAAGAACATCACCAACAGCGCATCGACTATCGAGAGAATTCCGAGACGCCCAAAGGTTCCCGTGTGTGGTGAGTCAAGATTTAAAAAATTWAAACAATCTCAAACTTTTTGTTTATTTCCAGAAAATATCAACCTGAAGAACTTGATTTTCAACCGTATTTCTTTCAACACAACTACCGTTTATGAATCCACCAGTAAGTATTTCGGTGGCCTCATGAAGCTTGCAAAATTTTACAGCGAGCGGTTTCCATGACATCACTATCAAGAAATTCGAAACCGGACAAATCATTTTTGCTGTCTCAGGACCCGGAAATCTGAAGTAAGATATTCACAGTTACACCAAATTTTTTTGAGGTCAACTGGAAATTTCTTACAGAGTTTCGATCTGGTCGACCGTCGAAGAGACTTATGCGGCGAAAACAATGCAAGTGACTAACGGATACGCAGCGTTTTCCTACAAAGGTATGAAAATTTAGGTGAAATCTGAAAGATAAGAATTTCAGATGGATACGAGCATGTTGCCGTGGACAAGCTCATTGCCTACATCGAGAATGACCTTGGAGAGCAGTGCTGGTATTATCTCACAATCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>445 141 105 96 75 50 40 26 22</canonical_bands>
                <polymorphic_bands>445 191 105 96 75 40 26 22</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 491 9</canonical_bands>
                <polymorphic_bands>509 491</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>501 230 161 99 9</canonical_bands>
                <polymorphic_bands>510 230 161 99</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAGAAGGAAACGGACAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATCAAGTTCTTCAGGTTGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAGAAGGAAACGGACAAAATGTCAATGATGCTTTCATTGAAGAAGAAGTTGATTTTGGATCGGGAGGAACCACTAAGGCAATTAACATTTCTGGAGCACTGAAGAACATCACCAACAGCGCATCGACTATCGAGAGAATTCCGAGACGCCCAAAGGTTCCCGTGTGTGGTGAGTCAAGATTTAAAAAATTTAAACAATCTCAAACTTTTTGTTTATTTCCAGAAAATATCAACCTGAAGAACTTGATTT</canonical_amplicon>
		<polymorphic_amplicon>CTAGAAGGAAACGGACAAAATGTCAATGATGCTTTCATTGAAGAAGAAGTTGATTTTGGATCGGGAGGAACCACTAAGGCAATTAACATTTCTGGAGCACTGAAGAACATCACCAACAGCGCATCGACTATCGAGAGAATTCCGAGACGCCCAAAGGTTCCCGTGTGTGGTGAGTCAAGATTTAAAAAATTWAAACAATCTCAAACTTTTTGTTTATTTCCAGAAAATATCAACCTGAAGAACTTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38520</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>300039</contig_pos>
        <strand></strand>
        <context>CGTATTTCTT[T/C]CAACACAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTTCCAGAAAATATCAACCTGAAGAACTTGATTTTCAACCGTATTTCTT</left_flank>
        <right_flank>CAACACAACTACCGTTTATGAATCCACCAGTAAGTATTTCGGTGGCCTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTATTTCGCTTCCATTCAAAGTTGTGCAATCGGTCCGCGAAACGAAAATCACTGTCAGATTTAGATTCGGTCGTTATAACAAAACCACTGAGGTTTACGCCAGCACTAATACTCTGGAACCACGTGAGTTACAGTAATCTCGAATTACACGTTTTAATATTTTTCAGCACGCCCACCTACTCTCTATTTGTCCATAATTTTTTCCGAATCTGAAATGGAAGAAGCAAAACGCCTAGAAGGAAACGGACAAAATGTCAATGATGCTTTCATTGAAGAAGAAGTTGATTTTGGATCGGGAGGAACCACTAAGGCAATTAACATTTCTGGAGCACTGAAGAACATCACCAACAGCGCATCGACTATCGAGAGAATTCCGAGACGCCCAAAGGTTCCCGTGTGTGGTGAGTCAAGATTTAAAAAATTTAAACAATCTCAAACTTTTTGTTTATTTCCAGAAAATATCAACCTGAAGAACTTGATTTTCAACCGTATTTCTTTCAACACAACTACCGTTTATGAATCCACCAGTAAGTATTTCGGTGGCCTCATGAAGCTTGCAAAATTTTACAGCGAGCGGTTTCCATGACATCACTATCAAGAAATTCGAAACCGGACAAATCATTTTTGCTGTCTCAGGACCCGGAAATCTGAAGTAAGATATTCACAGTTACACCAAATTTTTTTGAGGTCAACTGGAAATTTCTTACAGAGTTTCGATCTGGTCGACCGTCGAAGAGACTTATGCGGCGAAAACAATGCAAGTGACTAACGGATACGCAGCGTTTTCCTACAAAGGTATGAAAATTTAGGTGAAATCTGAAAGATAAGAATTTCAGATGGATACGAGCATGTTGCCGTGGACAAGCTCATTGCCTACATCGAGAATGACCTTGGAGAGCAGTGCTGGTATTATCTCACAATCAAACGTGTTGAATAATTAAGAATTGTTGTTCCGAATAAATTCATCAAGAATTCAATATTTGTCAAAAACCACTTTT</canonical>
            <polymorphic>CATTATTTCGCTTCCATTCAAAGTTGTGCAATCGGTCCGCGAAACGAAAATCACTGTCAGATTTAGATTCGGTCGTTATAACAAAACCACTGAGGTTTACGCCAGCACTAATACTCTGGAACCACGTGAGTTACAGTAATCTCGAATTACACGTTTTAATATTTTTCAGCACGCCCACCTACTCTCTATTTGTCCATAATTTTTTCCGAATCTGAAATGGAAGAAGCAAAACGCCTAGAAGGAAACGGACAAAATGTCAATGATGCTTTCATTGAAGAAGAAGTTGATTTTGGATCGGGAGGAACCACTAAGGCAATTAACATTTCTGGAGCACTGAAGAACATCACCAACAGCGCATCGACTATCGAGAGAATTCCGAGACGCCCAAAGGTTCCCGTGTGTGGTGAGTCAAGATTTAAAAAATTTAAACAATCTCAAACTTTTTGTTTATTTCCAGAAAATATCAACCTGAAGAACTTGATTTTCAACCGTATTTCTTYCAACACAACTACCGTTTATGAATCCACCAGTAAGTATTTCGGTGGCCTCATGAAGCTTGCAAAATTTTACAGCGAGCGGTTTCCATGACATCACTATCAAGAAATTCGAAACCGGACAAATCATTTTTGCTGTCTCAGGACCCGGAAATCTGAAGTAAGATATTCACAGTTACACCAAATTTTTTTGAGGTCAACTGGAAATTTCTTACAGAGTTTCGATCTGGTCGACCGTCGAAGAGACTTATGCGGCGAAAACAATGCAAGTGACTAACGGATACGCAGCGTTTTCCTACAAAGGTATGAAAATTTAGGTGAAATCTGAAAGATAAGAATTTCAGATGGATACGAGCATGTTGCCGTGGACAAGCTCATTGCCTACATCGAGAATGACCTTGGAGAGCAGTGCTGGTATTATCTCACAATCAAACGTGTTGAATAATTAAGAATTGTTGTTCCGAATAAATTCATCAAGAATTCAATATTTGTCAAAAACCACTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACAATCTCAAACTTTTTGTTTA</pcr_primer_p1>
		<pcr_primer_p2>CCTGAGACAGCAAAAATGAT</pcr_primer_p2>
		<pcr_amplicon_size>213</pcr_amplicon_size>
		<canonical_amplicon>AAACAATCTCAAACTTTTTGTTTATTTCCAGAAAATATCAACCTGAAGAACTTGATTTTCAACCGTATTTCTTTCAACACAACTACCGTTTATGAATCCACCAGTAAGTATTTCGGTGGCCTCATGAAGCTTGCAAAATTTTACAGCGAGCGGTTTCCATGACATCACTATCAAGAAATTCGAAACCGGACAAATCATTTTTGCTGTCTCAGG</canonical_amplicon>
		<polymorphic_amplicon>AAACAATCTCAAACTTTTTGTTTATTTCCAGAAAATATCAACCTGAAGAACTTGATTTTCAACCGTATTTCTTYCAACACAACTACCGTTTATGAATCCACCAGTAAGTATTTCGGTGGCCTCATGAAGCTTGCAAAATTTTACAGCGAGCGGTTTCCATGACATCACTATCAAGAAATTCGAAACCGGACAAATCATTTTTGCTGTCTCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38521</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>300129</contig_pos>
        <strand></strand>
        <context>TTTCCATGAC[A/C]TCACTATCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGGTGGCCTCATGAAGCTTGCAAAATTTTACAGCGAGCGGTTTCCATGAC</left_flank>
        <right_flank>TCACTATCAAGAAATTCGAAACCGGACAAATCATTTTTGCTGTCTCAGGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGGTTTACGCCAGCACTAATACTCTGGAACCACGTGAGTTACAGTAATCTCGAATTACACGTTTTAATATTTTTCAGCACGCCCACCTACTCTCTATTTGTCCATAATTTTTTCCGAATCTGAAATGGAAGAAGCAAAACGCCTAGAAGGAAACGGACAAAATGTCAATGATGCTTTCATTGAAGAAGAAGTTGATTTTGGATCGGGAGGAACCACTAAGGCAATTAACATTTCTGGAGCACTGAAGAACATCACCAACAGCGCATCGACTATCGAGAGAATTCCGAGACGCCCAAAGGTTCCCGTGTGTGGTGAGTCAAGATTTAAAAAATTTAAACAATCTCAAACTTTTTGTTTATTTCCAGAAAATATCAACCTGAAGAACTTGATTTTCAACCGTATTTCTTTCAACACAACTACCGTTTATGAATCCACCAGTAAGTATTTCGGTGGCCTCATGAAGCTTGCAAAATTTTACAGCGAGCGGTTTCCATGACATCACTATCAAGAAATTCGAAACCGGACAAATCATTTTTGCTGTCTCAGGACCCGGAAATCTGAAGTAAGATATTCACAGTTACACCAAATTTTTTTGAGGTCAACTGGAAATTTCTTACAGAGTTTCGATCTGGTCGACCGTCGAAGAGACTTATGCGGCGAAAACAATGCAAGTGACTAACGGATACGCAGCGTTTTCCTACAAAGGTATGAAAATTTAGGTGAAATCTGAAAGATAAGAATTTCAGATGGATACGAGCATGTTGCCGTGGACAAGCTCATTGCCTACATCGAGAATGACCTTGGAGAGCAGTGCTGGTATTATCTCACAATCAAACGTGTTGAATAATTAAGAATTGTTGTTCCGAATAAATTCATCAAGAATTCAATATTTGTCAAAAACCACTTTTTCAGCACAATAAAGGGAACAATTCAAAAATACAGGATTTCAATAAAATGTTTTTTACTGTTAAGAAGGGCTTTATTAATATTGTACAGTT</canonical>
            <polymorphic>TGAGGTTTACGCCAGCACTAATACTCTGGAACCACGTGAGTTACAGTAATCTCGAATTACACGTTTTAATATTTTTCAGCACGCCCACCTACTCTCTATTTGTCCATAATTTTTTCCGAATCTGAAATGGAAGAAGCAAAACGCCTAGAAGGAAACGGACAAAATGTCAATGATGCTTTCATTGAAGAAGAAGTTGATTTTGGATCGGGAGGAACCACTAAGGCAATTAACATTTCTGGAGCACTGAAGAACATCACCAACAGCGCATCGACTATCGAGAGAATTCCGAGACGCCCAAAGGTTCCCGTGTGTGGTGAGTCAAGATTTAAAAAATTTAAACAATCTCAAACTTTTTGTTTATTTCCAGAAAATATCAACCTGAAGAACTTGATTTTCAACCGTATTTCTTTCAACACAACTACCGTTTATGAATCCACCAGTAAGTATTTCGGTGGCCTCATGAAGCTTGCAAAATTTTACAGCGAGCGGTTTCCATGACMTCACTATCAAGAAATTCGAAACCGGACAAATCATTTTTGCTGTCTCAGGACCCGGAAATCTGAAGTAAGATATTCACAGTTACACCAAATTTTTTTGAGGTCAACTGGAAATTTCTTACAGAGTTTCGATCTGGTCGACCGTCGAAGAGACTTATGCGGCGAAAACAATGCAAGTGACTAACGGATACGCAGCGTTTTCCTACAAAGGTATGAAAATTTAGGTGAAATCTGAAAGATAAGAATTTCAGATGGATACGAGCATGTTGCCGTGGACAAGCTCATTGCCTACATCGAGAATGACCTTGGAGAGCAGTGCTGGTATTATCTCACAATCAAACGTGTTGAATAATTAAGAATTGTTGTTCCGAATAAATTCATCAAGAATTCAATATTTGTCAAAAACCACTTTTTCAGCACAATAAAGGGAACAATTCAAAAATACAGGATTTCAATAAAATGTTTTTTACTGTTAAGAAGGGCTTTATTAATATTGTACAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCAACCTGAAGAACTTGATTT</pcr_primer_p1>
		<pcr_primer_p2>TCTGTAAGAAATTTCCAGTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATCAACCTGAAGAACTTGATTTTCAACCGTATTTCTTTCAACACAACTACCGTTTATGAATCCACCAGTAAGTATTTCGGTGGCCTCATGAAGCTTGCAAAATTTTACAGCGAGCGGTTTCCATGACATCACTATCAAGAAATTCGAAACCGGACAAATCATTTTTGCTGTCTCAGGACCCGGAAATCTGAAGTAAGATATTCACAGTTACACCAAATTTTTTTGAGGTCAACTGGAAATTTCTTACAGA</canonical_amplicon>
		<polymorphic_amplicon>TATCAACCTGAAGAACTTGATTTTCAACCGTATTTCTTTCAACACAACTACCGTTTATGAATCCACCAGTAAGTATTTCGGTGGCCTCATGAAGCTTGCAAAATTTTACAGCGAGCGGTTTCCATGACMTCACTATCAAGAAATTCGAAACCGGACAAATCATTTTTGCTGTCTCAGGACCCGGAAATCTGAAGTAAGATATTCACAGTTACACCAAATTTTTTTGAGGTCAACTGGAAATTTCTTACAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38522</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>300206</contig_pos>
        <strand></strand>
        <context>AAGATATTCA[C/A]AGTTACACCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CAAATCATTTTTGCTGTCTCAGGACCCGGAAATCTGAAGTAAGATATTCA</left_flank>
        <right_flank>AGTTACACCAAATTTTTTTGAGGTCAACTGGAAATTTCTTACAGAGTTTC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCACGCCCACCTACTCTCTATTTGTCCATAATTTTTTCCGAATCTGAAATGGAAGAAGCAAAACGCCTAGAAGGAAACGGACAAAATGTCAATGATGCTTTCATTGAAGAAGAAGTTGATTTTGGATCGGGAGGAACCACTAAGGCAATTAACATTTCTGGAGCACTGAAGAACATCACCAACAGCGCATCGACTATCGAGAGAATTCCGAGACGCCCAAAGGTTCCCGTGTGTGGTGAGTCAAGATTTAAAAAATTTAAACAATCTCAAACTTTTTGTTTATTTCCAGAAAATATCAACCTGAAGAACTTGATTTTCAACCGTATTTCTTTCAACACAACTACCGTTTATGAATCCACCAGTAAGTATTTCGGTGGCCTCATGAAGCTTGCAAAATTTTACAGCGAGCGGTTTCCATGACATCACTATCAAGAAATTCGAAACCGGACAAATCATTTTTGCTGTCTCAGGACCCGGAAATCTGAAGTAAGATATTCACAGTTACACCAAATTTTTTTGAGGTCAACTGGAAATTTCTTACAGAGTTTCGATCTGGTCGACCGTCGAAGAGACTTATGCGGCGAAAACAATGCAAGTGACTAACGGATACGCAGCGTTTTCCTACAAAGGTATGAAAATTTAGGTGAAATCTGAAAGATAAGAATTTCAGATGGATACGAGCATGTTGCCGTGGACAAGCTCATTGCCTACATCGAGAATGACCTTGGAGAGCAGTGCTGGTATTATCTCACAATCAAACGTGTTGAATAATTAAGAATTGTTGTTCCGAATAAATTCATCAAGAATTCAATATTTGTCAAAAACCACTTTTTCAGCACAATAAAGGGAACAATTCAAAAATACAGGATTTCAATAAAATGTTTTTTACTGTTAAGAAGGGCTTTATTAATATTGTACAGTTTTCCGTTTACTGTGATTCAAACGAGCTGCGACGGGCTCTGATAGAAGGTCAAATGCAAAAGACTAGATTTGAATTCT</canonical>
            <polymorphic>AGCACGCCCACCTACTCTCTATTTGTCCATAATTTTTTCCGAATCTGAAATGGAAGAAGCAAAACGCCTAGAAGGAAACGGACAAAATGTCAATGATGCTTTCATTGAAGAAGAAGTTGATTTTGGATCGGGAGGAACCACTAAGGCAATTAACATTTCTGGAGCACTGAAGAACATCACCAACAGCGCATCGACTATCGAGAGAATTCCGAGACGCCCAAAGGTTCCCGTGTGTGGTGAGTCAAGATTTAAAAAATTTAAACAATCTCAAACTTTTTGTTTATTTCCAGAAAATATCAACCTGAAGAACTTGATTTTCAACCGTATTTCTTTCAACACAACTACCGTTTATGAATCCACCAGTAAGTATTTCGGTGGCCTCATGAAGCTTGCAAAATTTTACAGCGAGCGGTTTCCATGACATCACTATCAAGAAATTCGAAACCGGACAAATCATTTTTGCTGTCTCAGGACCCGGAAATCTGAAGTAAGATATTCAMAGTTACACCAAATTTTTTTGAGGTCAACTGGAAATTTCTTACAGAGTTTCGATCTGGTCGACCGTCGAAGAGACTTATGCGGCGAAAACAATGCAAGTGACTAACGGATACGCAGCGTTTTCCTACAAAGGTATGAAAATTTAGGTGAAATCTGAAAGATAAGAATTTCAGATGGATACGAGCATGTTGCCGTGGACAAGCTCATTGCCTACATCGAGAATGACCTTGGAGAGCAGTGCTGGTATTATCTCACAATCAAACGTGTTGAATAATTAAGAATTGTTGTTCCGAATAAATTCATCAAGAATTCAATATTTGTCAAAAACCACTTTTTCAGCACAATAAAGGGAACAATTCAAAAATACAGGATTTCAATAAAATGTTTTTTACTGTTAAGAAGGGCTTTATTAATATTGTACAGTTTTCCGTTTACTGTGATTCAAACGAGCTGCGACGGGCTCTGATAGAAGGTCAAATGCAAAAGACTAGATTTGAATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>328 323 155 66 62 29 23 14</canonical_bands>
                <polymorphic_bands>328 323 217 66 29 23 14</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>130 99 98 92 73 64 63 53 49 48 47 44 26 21 18 14 13 12 11 8 6 4 3 2 2</canonical_bands>
                <polymorphic_bands>130 99 98 92 81 64 63 53 49 48 47 44 26 21 18 14 13 12 11 6 4 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACAAATCATTTTTGCTGTCT</pcr_primer_p1>
		<pcr_primer_p2>CTCGTATCCATCTGAAATTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>GACAAATCATTTTTGCTGTCTCAGGACCCGGAAATCTGAAGTAAGATATTCACAGTTACACCAAATTTTTTTGAGGTCAACTGGAAATTTCTTACAGAGTTTCGATCTGGTCGACCGTCGAAGAGACTTATGCGGCGAAAACAATGCAAGTGACTAACGGATACGCAGCGTTTTCCTACAAAGGTATGAAAATTTAGGTGAAATCTGAAAGATAAGAATTTCAGATGGATACGAG</canonical_amplicon>
		<polymorphic_amplicon>GACAAATCATTTTTGCTGTCTCAGGACCCGGAAATCTGAAGTAAGATATTCAMAGTTACACCAAATTTTTTTGAGGTCAACTGGAAATTTCTTACAGAGTTTCGATCTGGTCGACCGTCGAAGAGACTTATGCGGCGAAAACAATGCAAGTGACTAACGGATACGCAGCGTTTTCCTACAAAGGTATGAAAATTTAGGTGAAATCTGAAAGATAAGAATTTCAGATGGATACGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38523</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>300255</contig_pos>
        <strand></strand>
        <context>TTACAGAGTT[T/C]CGATCTGGTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACAGTTACACCAAATTTTTTTGAGGTCAACTGGAAATTTCTTACAGAGTT</left_flank>
        <right_flank>CGATCTGGTCGACCGTCGAAGAGACTTATGCGGCGAAAACAATGCAAGTG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGAAGAAGCAAAACGCCTAGAAGGAAACGGACAAAATGTCAATGATGCTTTCATTGAAGAAGAAGTTGATTTTGGATCGGGAGGAACCACTAAGGCAATTAACATTTCTGGAGCACTGAAGAACATCACCAACAGCGCATCGACTATCGAGAGAATTCCGAGACGCCCAAAGGTTCCCGTGTGTGGTGAGTCAAGATTTAAAAAATTTAAACAATCTCAAACTTTTTGTTTATTTCCAGAAAATATCAACCTGAAGAACTTGATTTTCAACCGTATTTCTTTCAACACAACTACCGTTTATGAATCCACCAGTAAGTATTTCGGTGGCCTCATGAAGCTTGCAAAATTTTACAGCGAGCGGTTTCCATGACATCACTATCAAGAAATTCGAAACCGGACAAATCATTTTTGCTGTCTCAGGACCCGGAAATCTGAAGTAAGATATTCACAGTTACACCAAATTTTTTTGAGGTCAACTGGAAATTTCTTACAGAGTTTCGATCTGGTCGACCGTCGAAGAGACTTATGCGGCGAAAACAATGCAAGTGACTAACGGATACGCAGCGTTTTCCTACAAAGGTATGAAAATTTAGGTGAAATCTGAAAGATAAGAATTTCAGATGGATACGAGCATGTTGCCGTGGACAAGCTCATTGCCTACATCGAGAATGACCTTGGAGAGCAGTGCTGGTATTATCTCACAATCAAACGTGTTGAATAATTAAGAATTGTTGTTCCGAATAAATTCATCAAGAATTCAATATTTGTCAAAAACCACTTTTTCAGCACAATAAAGGGAACAATTCAAAAATACAGGATTTCAATAAAATGTTTTTTACTGTTAAGAAGGGCTTTATTAATATTGTACAGTTTTCCGTTTACTGTGATTCAAACGAGCTGCGACGGGCTCTGATAGAAGGTCAAATGCAAAAGACTAGATTTGAATTCTCGGAGCTAATTGTATTTTTGAAAGAAAAGAAGCCAATCCTACAACACTA</canonical>
            <polymorphic>ATGGAAGAAGCAAAACGCCTAGAAGGAAACGGACAAAATGTCAATGATGCTTTCATTGAAGAAGAAGTTGATTTTGGATCGGGAGGAACCACTAAGGCAATTAACATTTCTGGAGCACTGAAGAACATCACCAACAGCGCATCGACTATCGAGAGAATTCCGAGACGCCCAAAGGTTCCCGTGTGTGGTGAGTCAAGATTTAAAAAATTTAAACAATCTCAAACTTTTTGTTTATTTCCAGAAAATATCAACCTGAAGAACTTGATTTTCAACCGTATTTCTTTCAACACAACTACCGTTTATGAATCCACCAGTAAGTATTTCGGTGGCCTCATGAAGCTTGCAAAATTTTACAGCGAGCGGTTTCCATGACATCACTATCAAGAAATTCGAAACCGGACAAATCATTTTTGCTGTCTCAGGACCCGGAAATCTGAAGTAAGATATTCACAGTTACACCAAATTTTTTTGAGGTCAACTGGAAATTTCTTACAGAGTTYCGATCTGGTCGACCGTCGAAGAGACTTATGCGGCGAAAACAATGCAAGTGACTAACGGATACGCAGCGTTTTCCTACAAAGGTATGAAAATTTAGGTGAAATCTGAAAGATAAGAATTTCAGATGGATACGAGCATGTTGCCGTGGACAAGCTCATTGCCTACATCGAGAATGACCTTGGAGAGCAGTGCTGGTATTATCTCACAATCAAACGTGTTGAATAATTAAGAATTGTTGTTCCGAATAAATTCATCAAGAATTCAATATTTGTCAAAAACCACTTTTTCAGCACAATAAAGGGAACAATTCAAAAATACAGGATTTCAATAAAATGTTTTTTACTGTTAAGAAGGGCTTTATTAATATTGTACAGTTTTCCGTTTACTGTGATTCAAACGAGCTGCGACGGGCTCTGATAGAAGGTCAAATGCAAAAGACTAGATTTGAATTCTCGGAGCTAATTGTATTTTTGAAAGAAAAGAAGCCAATCCTACAACACTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>334 241 149 143 110 9 7 7</canonical_bands>
                <polymorphic_bands>334 241 149 143 119 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACAAATCATTTTTGCTGTCT</pcr_primer_p1>
		<pcr_primer_p2>CTCGTATCCATCTGAAATTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>GACAAATCATTTTTGCTGTCTCAGGACCCGGAAATCTGAAGTAAGATATTCACAGTTACACCAAATTTTTTTGAGGTCAACTGGAAATTTCTTACAGAGTTTCGATCTGGTCGACCGTCGAAGAGACTTATGCGGCGAAAACAATGCAAGTGACTAACGGATACGCAGCGTTTTCCTACAAAGGTATGAAAATTTAGGTGAAATCTGAAAGATAAGAATTTCAGATGGATACGAG</canonical_amplicon>
		<polymorphic_amplicon>GACAAATCATTTTTGCTGTCTCAGGACCCGGAAATCTGAAGTAAGATATTCACAGTTACACCAAATTTTTTTGAGGTCAACTGGAAATTTCTTACAGAGTTYCGATCTGGTCGACCGTCGAAGAGACTTATGCGGCGAAAACAATGCAAGTGACTAACGGATACGCAGCGTTTTCCTACAAAGGTATGAAAATTTAGGTGAAATCTGAAAGATAAGAATTTCAGATGGATACGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38524</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>300323</contig_pos>
        <strand></strand>
        <context>GATACGCAGC[G/A]TTTTCCTACA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAAGAGACTTATGCGGCGAAAACAATGCAAGTGACTAACGGATACGCAGC</left_flank>
        <right_flank>TTTTCCTACAAAGGTATGAAAATTTAGGTGAAATCTGAAAGATAAGAATT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATTTTGGATCGGGAGGAACCACTAAGGCAATTAACATTTCTGGAGCACTGAAGAACATCACCAACAGCGCATCGACTATCGAGAGAATTCCGAGACGCCCAAAGGTTCCCGTGTGTGGTGAGTCAAGATTTAAAAAATTTAAACAATCTCAAACTTTTTGTTTATTTCCAGAAAATATCAACCTGAAGAACTTGATTTTCAACCGTATTTCTTTCAACACAACTACCGTTTATGAATCCACCAGTAAGTATTTCGGTGGCCTCATGAAGCTTGCAAAATTTTACAGCGAGCGGTTTCCATGACATCACTATCAAGAAATTCGAAACCGGACAAATCATTTTTGCTGTCTCAGGACCCGGAAATCTGAAGTAAGATATTCACAGTTACACCAAATTTTTTTGAGGTCAACTGGAAATTTCTTACAGAGTTTCGATCTGGTCGACCGTCGAAGAGACTTATGCGGCGAAAACAATGCAAGTGACTAACGGATACGCAGCGTTTTCCTACAAAGGTATGAAAATTTAGGTGAAATCTGAAAGATAAGAATTTCAGATGGATACGAGCATGTTGCCGTGGACAAGCTCATTGCCTACATCGAGAATGACCTTGGAGAGCAGTGCTGGTATTATCTCACAATCAAACGTGTTGAATAATTAAGAATTGTTGTTCCGAATAAATTCATCAAGAATTCAATATTTGTCAAAAACCACTTTTTCAGCACAATAAAGGGAACAATTCAAAAATACAGGATTTCAATAAAATGTTTTTTACTGTTAAGAAGGGCTTTATTAATATTGTACAGTTTTCCGTTTACTGTGATTCAAACGAGCTGCGACGGGCTCTGATAGAAGGTCAAATGCAAAAGACTAGATTTGAATTCTCGGAGCTAATTGTATTTTTGAAAGAAAAGAAGCCAATCCTACAACACTAGCAACCACTGGTTCTGTAAACAACCGAGAATCGACTTTTTTTCCGAAATTTGATCTACCGCAATTGAC</canonical>
            <polymorphic>TGATTTTGGATCGGGAGGAACCACTAAGGCAATTAACATTTCTGGAGCACTGAAGAACATCACCAACAGCGCATCGACTATCGAGAGAATTCCGAGACGCCCAAAGGTTCCCGTGTGTGGTGAGTCAAGATTTAAAAAATTTAAACAATCTCAAACTTTTTGTTTATTTCCAGAAAATATCAACCTGAAGAACTTGATTTTCAACCGTATTTCTTTCAACACAACTACCGTTTATGAATCCACCAGTAAGTATTTCGGTGGCCTCATGAAGCTTGCAAAATTTTACAGCGAGCGGTTTCCATGACATCACTATCAAGAAATTCGAAACCGGACAAATCATTTTTGCTGTCTCAGGACCCGGAAATCTGAAGTAAGATATTCACAGTTACACCAAATTTTTTTGAGGTCAACTGGAAATTTCTTACAGAGTTTCGATCTGGTCGACCGTCGAAGAGACTTATGCGGCGAAAACAATGCAAGTGACTAACGGATACGCAGCRTTTTCCTACAAAGGTATGAAAATTTAGGTGAAATCTGAAAGATAAGAATTTCAGATGGATACGAGCATGTTGCCGTGGACAAGCTCATTGCCTACATCGAGAATGACCTTGGAGAGCAGTGCTGGTATTATCTCACAATCAAACGTGTTGAATAATTAAGAATTGTTGTTCCGAATAAATTCATCAAGAATTCAATATTTGTCAAAAACCACTTTTTCAGCACAATAAAGGGAACAATTCAAAAATACAGGATTTCAATAAAATGTTTTTTACTGTTAAGAAGGGCTTTATTAATATTGTACAGTTTTCCGTTTACTGTGATTCAAACGAGCTGCGACGGGCTCTGATAGAAGGTCAAATGCAAAAGACTAGATTTGAATTCTCGGAGCTAATTGTATTTTTGAAAGAAAAGAAGCCAATCCTACAACACTAGCAACCACTGGTTCTGTAAACAACCGAGAATCGACTTTTTTTCCGAAATTTGATCTACCGCAATTGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAACTGGAAATTTCTTACAGAG</pcr_primer_p1>
		<pcr_primer_p2>TTATTCAACACGTTTGATTGTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCAACTGGAAATTTCTTACAGAGTTTCGATCTGGTCGACCGTCGAAGAGACTTATGCGGCGAAAACAATGCAAGTGACTAACGGATACGCAGCGTTTTCCTACAAAGGTATGAAAATTTAGGTGAAATCTGAAAGATAAGAATTTCAGATGGATACGAGCATGTTGCCGTGGACAAGCTCATTGCCTACATCGAGAATGACCTTGGAGAGCAGTGCTGGTATTATCTCACAATCAAACGTGTTGAATAA</canonical_amplicon>
		<polymorphic_amplicon>TCAACTGGAAATTTCTTACAGAGTTTCGATCTGGTCGACCGTCGAAGAGACTTATGCGGCGAAAACAATGCAAGTGACTAACGGATACGCAGCRTTTTCCTACAAAGGTATGAAAATTTAGGTGAAATCTGAAAGATAAGAATTTCAGATGGATACGAGCATGTTGCCGTGGACAAGCTCATTGCCTACATCGAGAATGACCTTGGAGAGCAGTGCTGGTATTATCTCACAATCAAACGTGTTGAATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38525</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>329069</contig_pos>
        <strand>+</strand>
        <context>GYCTTTTAGG[G/T]AGGTAGGTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATTCTGTTGTATACAAGTTCCAAACTGTAAGAATAATGCGTCTTTTAGG</left_flank>
        <right_flank>AGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAGGAAAATCGAGGTGATGCGGCGGAGCACCACATCCAGTAATTCCGGATTCATTTCGAATCTGGTCGACGTTTTGTCCAATACCACACGAGTCTTACAGGTTAGCCTAAGATATTTCTGTAATTTTGATGGAAAATAAAGTTTCCACTTCTTTACCCATTGCGACGCTAAACTAATCTAATAAGCTTCAGTTTGATCTTCCTGTAGAAGTTATTCAAGTTCACCCAATTCTTAGAGGTAGTATGAAAAGTACGGTTATCAGAAACTTTTGAGTGTTAAAGCAATAATGGTTGTAAAACTGATAAGCGGCCGCCTCAAAGGCTTTGAAATTAGTAGCGTTGCATTTTAGAAAAAGGGGTATTGTTGTTATTGTTTGCATTTGCTTTTATGGCACCGTCAGTATTCCTCAGTCCTATTTGCCATATTCGACTCTACTCAAAATGTTCCTATTCTGTTGTATACAAGTTCCAAACTGTAAGAATAATGCGTCTTTTAGGCAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTTAAAGTTTTCGGAACCTCCAAATCTTATATCCTGGGGATTCCAAAACCTCAGAATTTCAGAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATG</canonical>
            <polymorphic>AGAAGGAAAATCGAGGTGATGCGGCGGAGCACCACATCCAGTAATTCCGGATTCATTTCGAATCTGGTCGACGTTTTGTCCAATACCACACGAGTCTTACAGGTTAGCCTAAGATATTTCTGTAATTTTGATGGAAAATAAAGTTTCCACTTCTTTACCCATTGCGACGCTAAACTAATCTAATAAGCTTCAGTTTGATCTTCCTGTAGAAGTTATTCAAGTTCACCCAATTCTTAGAGGTAGTATGAAAAGTACGGTTATCAGAAACTTTTGAGTGTTAAAGCAATAATGGTTGTAAAACTGATAAGCGGCCGCCTCAAAGGCTTTGAAATTAGTAGCGTTGCATTTTAGAAAAAGGGGTATTGTTGTTATTGTTTGCATTTGCTTTTATGGCACCGTCAGTATTCCTCAGTCCTATTTGCCATATTCGACTCTACTCAAAATGTTCCTATTCTGTTGTATACAAGTTCCAAACTGTAAGAATAATGCGTCTTTTAGGKAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTTAAAGTTTTCGGAACCTCCAAATCTTATATCCTGGGGATTCCAAAACCTCAGAATTTCAGAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATTGTTTGCATTTGCTTTTAT</pcr_primer_p1>
		<pcr_primer_p2>AAAAATACCTGAACCACAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTATTGTTTGCATTTGCTTTTATGGCACCGTCAGTATTCCTCAGTCCTATTTGCCATATTCGACTCTACTCAAAATGTTCCTATTCTGTTGTATACAAGTTCCAAACTGTAAGAATAATGCGTCTTTTAGGCAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTATTGTTTGCATTTGCTTTTATGGCACCGTCAGTATTCCTCAGTCCTATTTGCCATATTCGACTCTACTCAAAATGTTCCTATTCTGTTGTATACAAGTTCCAAACTGTAAGAATAATGCGTCTTTTAGGKAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38526</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>329150</contig_pos>
        <strand>+</strand>
        <context>AGGAACCACC[G/T]GCAAAATCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACC</left_flank>
        <right_flank>GCAAAATCATTAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATACCACACGAGTCTTACAGGTTAGCCTAAGATATTTCTGTAATTTTGATGGAAAATAAAGTTTCCACTTCTTTACCCATTGCGACGCTAAACTAATCTAATAAGCTTCAGTTTGATCTTCCTGTAGAAGTTATTCAAGTTCACCCAATTCTTAGAGGTAGTATGAAAAGTACGGTTATCAGAAACTTTTGAGTGTTAAAGCAATAATGGTTGTAAAACTGATAAGCGGCCGCCTCAAAGGCTTTGAAATTAGTAGCGTTGCATTTTAGAAAAAGGGGTATTGTTGTTATTGTTTGCATTTGCTTTTATGGCACCGTCAGTATTCCTCAGTCCTATTTGCCATATTCGACTCTACTCAAAATGTTCCTATTCTGTTGTATACAAGTTCCAAACTGTAAGAATAATGCGTCTTTTAGGCAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTTAAAGTTTTCGGAACCTCCAAATCTTATATCCTGGGGATTCCAAAACCTCAGAATTTCAGAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTT</canonical>
            <polymorphic>AATACCACACGAGTCTTACAGGTTAGCCTAAGATATTTCTGTAATTTTGATGGAAAATAAAGTTTCCACTTCTTTACCCATTGCGACGCTAAACTAATCTAATAAGCTTCAGTTTGATCTTCCTGTAGAAGTTATTCAAGTTCACCCAATTCTTAGAGGTAGTATGAAAAGTACGGTTATCAGAAACTTTTGAGTGTTAAAGCAATAATGGTTGTAAAACTGATAAGCGGCCGCCTCAAAGGCTTTGAAATTAGTAGCGTTGCATTTTAGAAAAAGGGGTATTGTTGTTATTGTTTGCATTTGCTTTTATGGCACCGTCAGTATTCCTCAGTCCTATTTGCCATATTCGACTCTACTCAAAATGTTCCTATTCTGTTGTATACAAGTTCCAAACTGTAAGAATAATGCGTCTTTTAGGCAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCKGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTTAAAGTTTTCGGAACCTCCAAATCTTATATCCTGGGGATTCCAAAACCTCAGAATTTCAGAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>456 262 204 43 35</canonical_bands>
                <polymorphic_bands>456 262 247 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAAATGTTCCTATTCTGTTGT</pcr_primer_p1>
		<pcr_primer_p2>TAAAATGGAATTTCTGCTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCAAAATGTTCCTATTCTGTTGTATACAAGTTCCAAACTGTAAGAATAATGCGTCTTTTAGGCAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTA</canonical_amplicon>
		<polymorphic_amplicon>TCAAAATGTTCCTATTCTGTTGTATACAAGTTCCAAACTGTAAGAATAATGCGTCTTTTAGGCAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCKGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38527</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>329275</contig_pos>
        <strand></strand>
        <context>AACTAATTTT[T/C]YCAARRCTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTT</left_flank>
        <right_flank>TCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGAAGTTATTCAAGTTCACCCAATTCTTAGAGGTAGTATGAAAAGTACGGTTATCAGAAACTTTTGAGTGTTAAAGCAATAATGGTTGTAAAACTGATAAGCGGCCGCCTCAAAGGCTTTGAAATTAGTAGCGTTGCATTTTAGAAAAAGGGGTATTGTTGTTATTGTTTGCATTTGCTTTTATGGCACCGTCAGTATTCCTCAGTCCTATTTGCCATATTCGACTCTACTCAAAATGTTCCTATTCTGTTGTATACAAGTTCCAAACTGTAAGAATAATGCGTCTTTTAGGCAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTTAAAGTTTTCGGAACCTCCAAATCTTATATCCTGGGGATTCCAAAACCTCAGAATTTCAGAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAATTTCAAAATCTTGAAATCTCACAATCTTTTAATCTTGGTATCCCAAAATTTCTGGTTCTTAGTATATTAATATTCCAAAACTTCAAAATCTTTTTT</canonical>
            <polymorphic>TAGAAGTTATTCAAGTTCACCCAATTCTTAGAGGTAGTATGAAAAGTACGGTTATCAGAAACTTTTGAGTGTTAAAGCAATAATGGTTGTAAAACTGATAAGCGGCCGCCTCAAAGGCTTTGAAATTAGTAGCGTTGCATTTTAGAAAAAGGGGTATTGTTGTTATTGTTTGCATTTGCTTTTATGGCACCGTCAGTATTCCTCAGTCCTATTTGCCATATTCGACTCTACTCAAAATGTTCCTATTCTGTTGTATACAAGTTCCAAACTGTAAGAATAATGCGTCTTTTAGGCAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTYTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTTAAAGTTTTCGGAACCTCCAAATCTTATATCCTGGGGATTCCAAAACCTCAGAATTTCAGAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAATTTCAAAATCTTGAAATCTCACAATCTTTTAATCTTGGTATCCCAAAATTTCTGGTTCTTAGTATATTAATATTCCAAAACTTCAAAATCTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTGTGGTTCAGGTATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATTCTAAGTTTCCGAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTT</canonical_amplicon>
		<polymorphic_amplicon>AAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTYTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38528</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>329276</contig_pos>
        <strand>+</strand>
        <context>ACTAATTTTY[C/T]CAARRCTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTT</left_flank>
        <right_flank>CAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAGTTATTCAAGTTCACCCAATTCTTAGAGGTAGTATGAAAAGTACGGTTATCAGAAACTTTTGAGTGTTAAAGCAATAATGGTTGTAAAACTGATAAGCGGCCGCCTCAAAGGCTTTGAAATTAGTAGCGTTGCATTTTAGAAAAAGGGGTATTGTTGTTATTGTTTGCATTTGCTTTTATGGCACCGTCAGTATTCCTCAGTCCTATTTGCCATATTCGACTCTACTCAAAATGTTCCTATTCTGTTGTATACAAGTTCCAAACTGTAAGAATAATGCGTCTTTTAGGCAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTTAAAGTTTTCGGAACCTCCAAATCTTATATCCTGGGGATTCCAAAACCTCAGAATTTCAGAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAATTTCAAAATCTTGAAATCTCACAATCTTTTAATCTTGGTATCCCAAAATTTCTGGTTCTTAGTATATTAATATTCCAAAACTTCAAAATCTTTTTTA</canonical>
            <polymorphic>AGAAGTTATTCAAGTTCACCCAATTCTTAGAGGTAGTATGAAAAGTACGGTTATCAGAAACTTTTGAGTGTTAAAGCAATAATGGTTGTAAAACTGATAAGCGGCCGCCTCAAAGGCTTTGAAATTAGTAGCGTTGCATTTTAGAAAAAGGGGTATTGTTGTTATTGTTTGCATTTGCTTTTATGGCACCGTCAGTATTCCTCAGTCCTATTTGCCATATTCGACTCTACTCAAAATGTTCCTATTCTGTTGTATACAAGTTCCAAACTGTAAGAATAATGCGTCTTTTAGGCAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTYCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTTAAAGTTTTCGGAACCTCCAAATCTTATATCCTGGGGATTCCAAAACCTCAGAATTTCAGAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAATTTCAAAATCTTGAAATCTCACAATCTTTTAATCTTGGTATCCCAAAATTTCTGGTTCTTAGTATATTAATATTCCAAAACTTCAAAATCTTTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTGTGGTTCAGGTATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATTCTAAGTTTCCGAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTT</canonical_amplicon>
		<polymorphic_amplicon>AAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTYCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38529</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>329280</contig_pos>
        <strand></strand>
        <context>ATTTTYYCAA[G/A]RCTCAAAACT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAA</left_flank>
        <right_flank>TCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTATTCAAGTTCACCCAATTCTTAGAGGTAGTATGAAAAGTACGGTTATCAGAAACTTTTGAGTGTTAAAGCAATAATGGTTGTAAAACTGATAAGCGGCCGCCTCAAAGGCTTTGAAATTAGTAGCGTTGCATTTTAGAAAAAGGGGTATTGTTGTTATTGTTTGCATTTGCTTTTATGGCACCGTCAGTATTCCTCAGTCCTATTTGCCATATTCGACTCTACTCAAAATGTTCCTATTCTGTTGTATACAAGTTCCAAACTGTAAGAATAATGCGTCTTTTAGGCAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTTAAAGTTTTCGGAACCTCCAAATCTTATATCCTGGGGATTCCAAAACCTCAGAATTTCAGAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAATTTCAAAATCTTGAAATCTCACAATCTTTTAATCTTGGTATCCCAAAATTTCTGGTTCTTAGTATATTAATATTCCAAAACTTCAAAATCTTTTTTAACCT</canonical>
            <polymorphic>GTTATTCAAGTTCACCCAATTCTTAGAGGTAGTATGAAAAGTACGGTTATCAGAAACTTTTGAGTGTTAAAGCAATAATGGTTGTAAAACTGATAAGCGGCCGCCTCAAAGGCTTTGAAATTAGTAGCGTTGCATTTTAGAAAAAGGGGTATTGTTGTTATTGTTTGCATTTGCTTTTATGGCACCGTCAGTATTCCTCAGTCCTATTTGCCATATTCGACTCTACTCAAAATGTTCCTATTCTGTTGTATACAAGTTCCAAACTGTAAGAATAATGCGTCTTTTAGGCAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAARTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTTAAAGTTTTCGGAACCTCCAAATCTTATATCCTGGGGATTCCAAAACCTCAGAATTTCAGAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAATTTCAAAATCTTGAAATCTCACAATCTTTTAATCTTGGTATCCCAAAATTTCTGGTTCTTAGTATATTAATATTCCAAAACTTCAAAATCTTTTTTAACCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTGTGGTTCAGGTATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATTCTAAGTTTCCGAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTT</canonical_amplicon>
		<polymorphic_amplicon>AAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAARTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38530</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>329281</contig_pos>
        <strand>+</strand>
        <context>TTTTYYCAAR[A/G]CTCAAAACTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAG</left_flank>
        <right_flank>CTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTATTCAAGTTCACCCAATTCTTAGAGGTAGTATGAAAAGTACGGTTATCAGAAACTTTTGAGTGTTAAAGCAATAATGGTTGTAAAACTGATAAGCGGCCGCCTCAAAGGCTTTGAAATTAGTAGCGTTGCATTTTAGAAAAAGGGGTATTGTTGTTATTGTTTGCATTTGCTTTTATGGCACCGTCAGTATTCCTCAGTCCTATTTGCCATATTCGACTCTACTCAAAATGTTCCTATTCTGTTGTATACAAGTTCCAAACTGTAAGAATAATGCGTCTTTTAGGCAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTTAAAGTTTTCGGAACCTCCAAATCTTATATCCTGGGGATTCCAAAACCTCAGAATTTCAGAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAATTTCAAAATCTTGAAATCTCACAATCTTTTAATCTTGGTATCCCAAAATTTCTGGTTCTTAGTATATTAATATTCCAAAACTTCAAAATCTTTTTTAACCTC</canonical>
            <polymorphic>TTATTCAAGTTCACCCAATTCTTAGAGGTAGTATGAAAAGTACGGTTATCAGAAACTTTTGAGTGTTAAAGCAATAATGGTTGTAAAACTGATAAGCGGCCGCCTCAAAGGCTTTGAAATTAGTAGCGTTGCATTTTAGAAAAAGGGGTATTGTTGTTATTGTTTGCATTTGCTTTTATGGCACCGTCAGTATTCCTCAGTCCTATTTGCCATATTCGACTCTACTCAAAATGTTCCTATTCTGTTGTATACAAGTTCCAAACTGTAAGAATAATGCGTCTTTTAGGCAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGRCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTTAAAGTTTTCGGAACCTCCAAATCTTATATCCTGGGGATTCCAAAACCTCAGAATTTCAGAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAATTTCAAAATCTTGAAATCTCACAATCTTTTAATCTTGGTATCCCAAAATTTCTGGTTCTTAGTATATTAATATTCCAAAACTTCAAAATCTTTTTTAACCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTGTGGTTCAGGTATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATTCTAAGTTTCCGAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTT</canonical_amplicon>
		<polymorphic_amplicon>AAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGRCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38531</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>329320</contig_pos>
        <strand>+</strand>
        <context>GAGTCTTGGC[A/T]TTACAGAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGC</left_flank>
        <right_flank>TTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTACGGTTATCAGAAACTTTTGAGTGTTAAAGCAATAATGGTTGTAAAACTGATAAGCGGCCGCCTCAAAGGCTTTGAAATTAGTAGCGTTGCATTTTAGAAAAAGGGGTATTGTTGTTATTGTTTGCATTTGCTTTTATGGCACCGTCAGTATTCCTCAGTCCTATTTGCCATATTCGACTCTACTCAAAATGTTCCTATTCTGTTGTATACAAGTTCCAAACTGTAAGAATAATGCGTCTTTTAGGCAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTTAAAGTTTTCGGAACCTCCAAATCTTATATCCTGGGGATTCCAAAACCTCAGAATTTCAGAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAATTTCAAAATCTTGAAATCTCACAATCTTTTAATCTTGGTATCCCAAAATTTCTGGTTCTTAGTATATTAATATTCCAAAACTTCAAAATCTTTTTTAACCTCGAAACATCAGAATCTTAGGCTTTCAAAATCTCGAAATCT</canonical>
            <polymorphic>GTACGGTTATCAGAAACTTTTGAGTGTTAAAGCAATAATGGTTGTAAAACTGATAAGCGGCCGCCTCAAAGGCTTTGAAATTAGTAGCGTTGCATTTTAGAAAAAGGGGTATTGTTGTTATTGTTTGCATTTGCTTTTATGGCACCGTCAGTATTCCTCAGTCCTATTTGCCATATTCGACTCTACTCAAAATGTTCCTATTCTGTTGTATACAAGTTCCAAACTGTAAGAATAATGCGTCTTTTAGGCAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCWTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTTAAAGTTTTCGGAACCTCCAAATCTTATATCCTGGGGATTCCAAAACCTCAGAATTTCAGAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAATTTCAAAATCTTGAAATCTCACAATCTTTTAATCTTGGTATCCCAAAATTTCTGGTTCTTAGTATATTAATATTCCAAAACTTCAAAATCTTTTTTAACCTCGAAACATCAGAATCTTAGGCTTTCAAAATCTCGAAATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>426 303 179 60 20 12</canonical_bands>
                <polymorphic_bands>605 303 60 20 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACTGTGGTTCAGGTATTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATTCTAAGTTTCCGAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTT</canonical_amplicon>
		<polymorphic_amplicon>AAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCWTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38532</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>329518</contig_pos>
        <strand>+</strand>
        <context>TCAGATTTTG[A/G]AAAACATGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTG</left_flank>
        <right_flank>AAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTCTGTTGTATACAAGTTCCAAACTGTAAGAATAATGCGTCTTTTAGGCAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTTAAAGTTTTCGGAACCTCCAAATCTTATATCCTGGGGATTCCAAAACCTCAGAATTTCAGAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAATTTCAAAATCTTGAAATCTCACAATCTTTTAATCTTGGTATCCCAAAATTTCTGGTTCTTAGTATATTAATATTCCAAAACTTCAAAATCTTTTTTAACCTCGAAACATCAGAATCTTAGGCTTTCAAAATCTCGAAATCTTCAGTTTTTAGTTTTTCAGAATTTCAGAATATCAGAATATCAAAATCTCAAAACCTCAGAATCTTAAAACCTTTGAATATAATAACCAATACGTGCAATTGACCCCAGATATGTTTAGACCCAATGACTCATTCTCCATACATTTCTGGACACTTCGTACTTTGTCCACCTCATCCCTCACCACCGGATCCCATTCGA</canonical>
            <polymorphic>TATTCTGTTGTATACAAGTTCCAAACTGTAAGAATAATGCGTCTTTTAGGCAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTTAAAGTTTTCGGAACCTCCAAATCTTATATCCTGGGGATTCCAAAACCTCAGAATTTCAGAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGRAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAATTTCAAAATCTTGAAATCTCACAATCTTTTAATCTTGGTATCCCAAAATTTCTGGTTCTTAGTATATTAATATTCCAAAACTTCAAAATCTTTTTTAACCTCGAAACATCAGAATCTTAGGCTTTCAAAATCTCGAAATCTTCAGTTTTTAGTTTTTCAGAATTTCAGAATATCAGAATATCAAAATCTCAAAACCTCAGAATCTTAAAACCTTTGAATATAATAACCAATACGTGCAATTGACCCCAGATATGTTTAGACCCAATGACTCATTCTCCATACATTTCTGGACACTTCGTACTTTGTCCACCTCATCCCTCACCACCGGATCCCATTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCTTATATCCTGGGGATTC</pcr_primer_p1>
		<pcr_primer_p2>TTTCGAGATTTTGAGATTCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAATCTTATATCCTGGGGATTCCAAAACCTCAGAATTTCAGAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAA</canonical_amplicon>
		<polymorphic_amplicon>AAATCTTATATCCTGGGGATTCCAAAACCTCAGAATTTCAGAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGRAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38533</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>329554</contig_pos>
        <strand>+</strand>
        <context>ACTAAGAATC[C/T]CAGAATTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATC</left_flank>
        <right_flank>CAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGCGTCTTTTAGGCAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTTAAAGTTTTCGGAACCTCCAAATCTTATATCCTGGGGATTCCAAAACCTCAGAATTTCAGAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAATTTCAAAATCTTGAAATCTCACAATCTTTTAATCTTGGTATCCCAAAATTTCTGGTTCTTAGTATATTAATATTCCAAAACTTCAAAATCTTTTTTAACCTCGAAACATCAGAATCTTAGGCTTTCAAAATCTCGAAATCTTCAGTTTTTAGTTTTTCAGAATTTCAGAATATCAGAATATCAAAATCTCAAAACCTCAGAATCTTAAAACCTTTGAATATAATAACCAATACGTGCAATTGACCCCAGATATGTTTAGACCCAATGACTCATTCTCCATACATTTCTGGACACTTCGTACTTTGTCCACCTCATCCCTCACCACCGGATCCCATTCGAACTCCACCGAGCTCCTTCATCCCCCACTTCATGATA</canonical>
            <polymorphic>ATGCGTCTTTTAGGCAGGTAGGTGTTTTTGATTCGATCGGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTTAAAGTTTTCGGAACCTCCAAATCTTATATCCTGGGGATTCCAAAACCTCAGAATTTCAGAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCYCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAATTTCAAAATCTTGAAATCTCACAATCTTTTAATCTTGGTATCCCAAAATTTCTGGTTCTTAGTATATTAATATTCCAAAACTTCAAAATCTTTTTTAACCTCGAAACATCAGAATCTTAGGCTTTCAAAATCTCGAAATCTTCAGTTTTTAGTTTTTCAGAATTTCAGAATATCAGAATATCAAAATCTCAAAACCTCAGAATCTTAAAACCTTTGAATATAATAACCAATACGTGCAATTGACCCCAGATATGTTTAGACCCAATGACTCATTCTCCATACATTTCTGGACACTTCGTACTTTGTCCACCTCATCCCTCACCACCGGATCCCATTCGAACTCCACCGAGCTCCTTCATCCCCCACTTCATGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>277 179 80 80 58 56 40 38 37 32 24 18 16 16 16 14 11 8</canonical_bands>
                <polymorphic_bands>277 179 80 80 58 56 40 40 38 37 24 18 16 16 16 14 11</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>278 176 146 48 46 43 40 40 31 26 24 24 16 16 8 8 8 8 8 6</canonical_bands>
                <polymorphic_bands>278 176 146 54 48 43 40 40 31 26 24 24 16 16 8 8 8 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATTCTCAATATCATCGCTAAG</pcr_primer_p1>
		<pcr_primer_p2>TGGGATACCAAGATTAAAAGATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAATTTCAAAATCTTGAAATCTCACAATCTTTTAATCTTGGTATCCCA</canonical_amplicon>
		<polymorphic_amplicon>ACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCYCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAATTTCAAAATCTTGAAATCTCACAATCTTTTAATCTTGGTATCCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38534</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>329592</contig_pos>
        <strand>+</strand>
        <context>AATCTTAGAA[C/T]CACATAATCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAA</left_flank>
        <right_flank>CACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTTAAAGTTTTCGGAACCTCCAAATCTTATATCCTGGGGATTCCAAAACCTCAGAATTTCAGAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAATTTCAAAATCTTGAAATCTCACAATCTTTTAATCTTGGTATCCCAAAATTTCTGGTTCTTAGTATATTAATATTCCAAAACTTCAAAATCTTTTTTAACCTCGAAACATCAGAATCTTAGGCTTTCAAAATCTCGAAATCTTCAGTTTTTAGTTTTTCAGAATTTCAGAATATCAGAATATCAAAATCTCAAAACCTCAGAATCTTAAAACCTTTGAATATAATAACCAATACGTGCAATTGACCCCAGATATGTTTAGACCCAATGACTCATTCTCCATACATTTCTGGACACTTCGTACTTTGTCCACCTCATCCCTCACCACCGGATCCCATTCGAACTCCACCGAGCTCCTTCATCCCCCACTTCATGATAAATTTTCTCGTGTGATAGGCCCACCTACATCATGTCTA</canonical>
            <polymorphic>GGTGACGTTATACGCAAACCTGAAAATGTAGCAGATGGTTCTTTTGGAGGAACCACCTGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTTAAAGTTTTCGGAACCTCCAAATCTTATATCCTGGGGATTCCAAAACCTCAGAATTTCAGAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAAYCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAATTTCAAAATCTTGAAATCTCACAATCTTTTAATCTTGGTATCCCAAAATTTCTGGTTCTTAGTATATTAATATTCCAAAACTTCAAAATCTTTTTTAACCTCGAAACATCAGAATCTTAGGCTTTCAAAATCTCGAAATCTTCAGTTTTTAGTTTTTCAGAATTTCAGAATATCAGAATATCAAAATCTCAAAACCTCAGAATCTTAAAACCTTTGAATATAATAACCAATACGTGCAATTGACCCCAGATATGTTTAGACCCAATGACTCATTCTCCATACATTTCTGGACACTTCGTACTTTGTCCACCTCATCCCTCACCACCGGATCCCATTCGAACTCCACCGAGCTCCTTCATCCCCCACTTCATGATAAATTTTCTCGTGTGATAGGCCCACCTACATCATGTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATTCTCAATATCATCGCTAAG</pcr_primer_p1>
		<pcr_primer_p2>TGGGATACCAAGATTAAAAGATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAATTTCAAAATCTTGAAATCTCACAATCTTTTAATCTTGGTATCCCA</canonical_amplicon>
		<polymorphic_amplicon>ACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAAYCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAATTTCAAAATCTTGAAATCTCACAATCTTTTAATCTTGGTATCCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38535</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>329627</contig_pos>
        <strand>+</strand>
        <context>CTCAAAATCT[C/T]AGAATCCCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCT</left_flank>
        <right_flank>AGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGTTCTTTTGGAGGAACCACCTGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTTAAAGTTTTCGGAACCTCCAAATCTTATATCCTGGGGATTCCAAAACCTCAGAATTTCAGAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAATTTCAAAATCTTGAAATCTCACAATCTTTTAATCTTGGTATCCCAAAATTTCTGGTTCTTAGTATATTAATATTCCAAAACTTCAAAATCTTTTTTAACCTCGAAACATCAGAATCTTAGGCTTTCAAAATCTCGAAATCTTCAGTTTTTAGTTTTTCAGAATTTCAGAATATCAGAATATCAAAATCTCAAAACCTCAGAATCTTAAAACCTTTGAATATAATAACCAATACGTGCAATTGACCCCAGATATGTTTAGACCCAATGACTCATTCTCCATACATTTCTGGACACTTCGTACTTTGTCCACCTCATCCCTCACCACCGGATCCCATTCGAACTCCACCGAGCTCCTTCATCCCCCACTTCATGATAAATTTTCTCGTGTGATAGGCCCACCTACATCATGTCTAGTCTCTCTCAGCTCACACAATGATCTCTCAACAAT</canonical>
            <polymorphic>TGGTTCTTTTGGAGGAACCACCTGCAAAATCATTAAAAACTGTGGTTCAGGTATTTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTTAAAGTTTTCGGAACCTCCAAATCTTATATCCTGGGGATTCCAAAACCTCAGAATTTCAGAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTYAGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAATTTCAAAATCTTGAAATCTCACAATCTTTTAATCTTGGTATCCCAAAATTTCTGGTTCTTAGTATATTAATATTCCAAAACTTCAAAATCTTTTTTAACCTCGAAACATCAGAATCTTAGGCTTTCAAAATCTCGAAATCTTCAGTTTTTAGTTTTTCAGAATTTCAGAATATCAGAATATCAAAATCTCAAAACCTCAGAATCTTAAAACCTTTGAATATAATAACCAATACGTGCAATTGACCCCAGATATGTTTAGACCCAATGACTCATTCTCCATACATTTCTGGACACTTCGTACTTTGTCCACCTCATCCCTCACCACCGGATCCCATTCGAACTCCACCGAGCTCCTTCATCCCCCACTTCATGATAAATTTTCTCGTGTGATAGGCCCACCTACATCATGTCTAGTCTCTCTCAGCTCACACAATGATCTCTCAACAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>249 205 146 48 46 43 40 40 31 26 24 24 16 16 8 8 8 8 8 6</canonical_bands>
                <polymorphic_bands>249 205 146 48 46 43 40 40 32 31 26 24 24 8 8 8 8 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACATTCTCAATATCATCGCTAAG</pcr_primer_p1>
		<pcr_primer_p2>TGGGATACCAAGATTAAAAGATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAATTTCAAAATCTTGAAATCTCACAATCTTTTAATCTTGGTATCCCA</canonical_amplicon>
		<polymorphic_amplicon>ACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTYAGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAATTTCAAAATCTTGAAATCTCACAATCTTTTAATCTTGGTATCCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38536</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>329681</contig_pos>
        <strand>+</strand>
        <context>ATCTCGAAAT[C/T]TCAAAATCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAAT</left_flank>
        <right_flank>TCAAAATCTTGAAATCTCACAATCTTTTAATCTTGGTATCCCAAAATTTC</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTTAAAGTTTTCGGAACCTCCAAATCTTATATCCTGGGGATTCCAAAACCTCAGAATTTCAGAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAATTTCAAAATCTTGAAATCTCACAATCTTTTAATCTTGGTATCCCAAAATTTCTGGTTCTTAGTATATTAATATTCCAAAACTTCAAAATCTTTTTTAACCTCGAAACATCAGAATCTTAGGCTTTCAAAATCTCGAAATCTTCAGTTTTTAGTTTTTCAGAATTTCAGAATATCAGAATATCAAAATCTCAAAACCTCAGAATCTTAAAACCTTTGAATATAATAACCAATACGTGCAATTGACCCCAGATATGTTTAGACCCAATGACTCATTCTCCATACATTTCTGGACACTTCGTACTTTGTCCACCTCATCCCTCACCACCGGATCCCATTCGAACTCCACCGAGCTCCTTCATCCCCCACTTCATGATAAATTTTCTCGTGTGATAGGCCCACCTACATCATGTCTAGTCTCTCTCAGCTCACACAATGATCTCTCAACAATAAATGATGATGATAGAGCTGAATGAAGAGGAGAGAAAGAGTGTCATTGCATCCT</canonical>
            <polymorphic>TTTTTTTTCAATGCAAGATTTTTTTGATTGCGAAAAATAGAGAACAATGGGTCAAGAAAAGCAGAAATTCCATTTTAAAAATGAACTAATTTTTTCAAGTCTCAAAACTTCAAAATTTCGATATCTTGGAGTCTTGGCTTTACAGAATTCTGAGAGAATTCTAAGAATTTGAAGAGAACTCAGACTCTGAAAATAACAGAATTCCAAAAACTCGGAAACTTAGAATTTAAAGTTTTCGGAACCTCCAAATCTTATATCCTGGGGATTCCAAAACCTCAGAATTTCAGAATTTTACATTCTCAATATCATCGCTAAGCCATAAAACCTCAGATTTTGAAAAACATGAACCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAATYTCAAAATCTTGAAATCTCACAATCTTTTAATCTTGGTATCCCAAAATTTCTGGTTCTTAGTATATTAATATTCCAAAACTTCAAAATCTTTTTTAACCTCGAAACATCAGAATCTTAGGCTTTCAAAATCTCGAAATCTTCAGTTTTTAGTTTTTCAGAATTTCAGAATATCAGAATATCAAAATCTCAAAACCTCAGAATCTTAAAACCTTTGAATATAATAACCAATACGTGCAATTGACCCCAGATATGTTTAGACCCAATGACTCATTCTCCATACATTTCTGGACACTTCGTACTTTGTCCACCTCATCCCTCACCACCGGATCCCATTCGAACTCCACCGAGCTCCTTCATCCCCCACTTCATGATAAATTTTCTCGTGTGATAGGCCCACCTACATCATGTCTAGTCTCTCTCAGCTCACACAATGATCTCTCAACAATAAATGATGATGATAGAGCTGAATGAAGAGGAGAGAAAGAGTGTCATTGCATCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>215 127 114 89 72 65 56 48 48 34 32 32 24 16 11 9 8</canonical_bands>
                <polymorphic_bands>215 127 120 114 89 65 56 48 34 32 32 24 16 11 9 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>138 127 114 89 77 72 65 56 48 34 32 32 26 24 22 16 11 9 8</canonical_bands>
                <polymorphic_bands>138 127 120 114 89 77 65 56 34 32 32 26 24 22 16 11 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGAAAACTTTAAAAACTAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>CTGATGTTTCGAGGTTAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>263</pcr_amplicon_size>
		<canonical_amplicon>CCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAATTTCAAAATCTTGAAATCTCACAATCTTTTAATCTTGGTATCCCAAAATTTCTGGTTCTTAGTATATTAATATTCCAAAACTTCAAAATCTTTTTTAACCTCGAAACATCAG</canonical_amplicon>
		<polymorphic_amplicon>CCGAAAACTTTAAAAACTAAGAATCTCAGAATTTCAGAATGTCAGAATTTAAAAATCTTAGAACCACATAATCTTAGAATTTCAGAATCTCAAAATCTCAGAATCCCATGATCTCAGATCTTCAAAATCTTAGAATCTCAAAATCTCGAAATYTCAAAATCTTGAAATCTCACAATCTTTTAATCTTGGTATCCCAAAATTTCTGGTTCTTAGTATATTAATATTCCAAAACTTCAAAATCTTTTTTAACCTCGAAACATCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38537</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>331340</contig_pos>
        <strand>+</strand>
        <context>TTCCTCAACG[C/T]CTATTTTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCCGCCACCCGCACCCCAACTACACCACATTCCACTCATTTCCTCAACG</left_flank>
        <right_flank>CTATTTTTTCACGCATCCGCCTACATTATCTCAACTTTGTCACTTTTCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGATTATTCACGGGCCAAGTTTTGTTAAATATGGCTTCAGAACAGCGCAGTGAACTCCTAAATTTCGAAAAAATGGAATTAAAGAATTTCGAGAAAATCATTTTGTCTCTCTGCTCGAACTTTTTCGTTTCCCTCATTTTAGAATTTAGAGCTGTACATTTTGAAAAGAAATAGCTATAAAACCTTTGCCTATTGACATTTTATGCATGATTTCAAACACAATGAATTTAATAATTTCTAATAGATTTTCCATACTTCCATGTACACAGAGACACACTCACAAATAGACCAATTTTTGTTTGTATTAGAAAATGAAGAAAACCAAAGAGCCTGACCACCACCAAACGTTCATTTTCTGCTTTCTCTTCTCTTTTTTTGCTGGTTTATTCACACATCTGGCATAAAGGGTCCCTCTCAACCCCCAACCAATTGCCCTCTGCCATCCCTATCCGCCACCCGCACCCCAACTACACCACATTCCACTCATTTCCTCAACGCCTATTTTTTCACGCATCCGCCTACATTATCTCAACTTTGTCACTTTTCCTTTCGGCATTTTCCTTGTCGACGTCTTCTTGTTTTCTCCTGTATATTCATTTTTTCTTGACTAGTCTGTTTTCTGGGCGGAAGCGGAAGGAATAGGATGGGAGGAGGAGACGAAATGTGTAAATCCTAGCAACACATAGTCACTCATCCACACTCAATCGCACTTGGTTTTCTTTTTTCTCATAAGGACGCATAATTGTGTTGGGCATGACCGCGTTGCCAACCGTAACTTCTTGTCCTATTGTTACACACCTATTTTTCCCTTTTCTCACACTTATTTTTGTATTTTTTGGGAGAAATGAACGAGAAACGGGAGAATGAGACAGAAAGAAAACGTTTTTTTTGGGGTTGGTTTCATTTCGGCAACACAATCTCTTCTTCTCTCGCTTTTTATATTTCGATTCTGCACTTCGGCAAATAACACGATACCTTAGAGACCCATTTAACCTATT</canonical>
            <polymorphic>TGTGATTATTCACGGGCCAAGTTTTGTTAAATATGGCTTCAGAACAGCGCAGTGAACTCCTAAATTTCGAAAAAATGGAATTAAAGAATTTCGAGAAAATCATTTTGTCTCTCTGCTCGAACTTTTTCGTTTCCCTCATTTTAGAATTTAGAGCTGTACATTTTGAAAAGAAATAGCTATAAAACCTTTGCCTATTGACATTTTATGCATGATTTCAAACACAATGAATTTAATAATTTCTAATAGATTTTCCATACTTCCATGTACACAGAGACACACTCACAAATAGACCAATTTTTGTTTGTATTAGAAAATGAAGAAAACCAAAGAGCCTGACCACCACCAAACGTTCATTTTCTGCTTTCTCTTCTCTTTTTTTGCTGGTTTATTCACACATCTGGCATAAAGGGTCCCTCTCAACCCCCAACCAATTGCCCTCTGCCATCCCTATCCGCCACCCGCACCCCAACTACACCACATTCCACTCATTTCCTCAACGYCTATTTTTTCACGCATCCGCCTACATTATCTCAACTTTGTCACTTTTCCTTTCGGCATTTTCCTTGTCGACGTCTTCTTGTTTTCTCCTGTATATTCATTTTTTCTTGACTAGTCTGTTTTCTGGGCGGAAGCGGAAGGAATAGGATGGGAGGAGGAGACGAAATGTGTAAATCCTAGCAACACATAGTCACTCATCCACACTCAATCGCACTTGGTTTTCTTTTTTCTCATAAGGACGCATAATTGTGTTGGGCATGACCGCGTTGCCAACCGTAACTTCTTGTCCTATTGTTACACACCTATTTTTCCCTTTTCTCACACTTATTTTTGTATTTTTTGGGAGAAATGAACGAGAAACGGGAGAATGAGACAGAAAGAAAACGTTTTTTTTGGGGTTGGTTTCATTTCGGCAACACAATCTCTTCTTCTCTCGCTTTTTATATTTCGATTCTGCACTTCGGCAAATAACACGATACCTTAGAGACCCATTTAACCTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGCTGGTTTATTCACACAT</pcr_primer_p1>
		<pcr_primer_p2>CCAGAAAACAGACTAGTCAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTGCTGGTTTATTCACACATCTGGCATAAAGGGTCCCTCTCAACCCCCAACCAATTGCCCTCTGCCATCCCTATCCGCCACCCGCACCCCAACTACACCACATTCCACTCATTTCCTCAACGCCTATTTTTTCACGCATCCGCCTACATTATCTCAACTTTGTCACTTTTCCTTTCGGCATTTTCCTTGTCGACGTCTTCTTGTTTTCTCCTGTATATTCATTTTTTCTTGACTAGTCTGTTTTCTGG</canonical_amplicon>
		<polymorphic_amplicon>TTTGCTGGTTTATTCACACATCTGGCATAAAGGGTCCCTCTCAACCCCCAACCAATTGCCCTCTGCCATCCCTATCCGCCACCCGCACCCCAACTACACCACATTCCACTCATTTCCTCAACGYCTATTTTTTCACGCATCCGCCTACATTATCTCAACTTTGTCACTTTTCCTTTCGGCATTTTCCTTGTCGACGTCTTCTTGTTTTCTCCTGTATATTCATTTTTTCTTGACTAGTCTGTTTTCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38538</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>346265</contig_pos>
        <strand>+</strand>
        <context>CTGGGACGTG[A/G]TCCGCTCCGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGCGAATCTGATACTCCTGACAGATTTGCTCCCATTGCTCTGGGACGTG</left_flank>
        <right_flank>TCCGCTCCGAGTTGGATTGAACCATCACAGCAGATGAAGGATCCTCTTCC</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAGTTGCCTTGAAGCTTTTTTCTCTATTTTAACAAACTTTTGCTTGAAAAAAAACTCACATTTAAATGATGCATGGTTCGATTGAGCTCAATTGCCTTCTCTGCATTCTCTTCCAAAAATTGAACCAGCGATGGCACATCAACATTACATGGAATATACAGCCGACCATCGACTCCAATAGCCAACTCGTCATATGAAGTGACCACCTGGAATAATACTGGATTAAAATCAATCTGCTTTTTGTTGAAGACTTACTTCTAGCATTGAATTCTTCGCCGAATCCTCCACTCTTCGCAACAACGCCTCCTTCTTCCACACTCTTACTGTCAACGTCTGCAACTGAGTGAGTGTCTGAGCCAATCCTTTATTATGAGGCAGCAATATCTGTGCACCTCCAAACGTTTGCTCTAATTGTTTTGCAGTCTCTTTGAGAATTGGAATCTGATTTTTGCGAATCTGATACTCCTGACAGATTTGCTCCCATTGCTCTGGGACGTGATCCGCTCCGAGTTGGATTGAACCATCACAGCAGATGAAGGATCCTCTTCCAAATCGTAGTACGTTTTTGAAAAAAGCCTTTTCAAGAATTATCCTAGTCTCTGGAACTGCTTGGTCAAGCATTCGGTTCACATTTGCAATGCATCGTCGCATATGAGATTGTTCCCAGTGCATTTGCCATACAACCTGAAGCATTCGGCACATTCTGTGTTGTTAATTTTCGGGTGATCTTTTAAAGCATCTTGTCAGCCACTCAAAAAATCAATATTTCAAGATCAAGTTTTGCTAGGTTCAAAAAGATACCGTATATTACAGAAATCGCCAAAAACTCACATCTTTCAGCTGCGTTCTATATTTCAAATCAGAAATATCCTCTTGAATCGAGACACGAAGTGTTTTCGCTTCTCTCTTTTTTCTCATTGCCTCATCGCGTTGATTGGTCAAAGAATCATAGAGATTCGTGATAACTGTGGCTTTCTTTCTTTTGAGGTACCTGAAAAA</canonical>
            <polymorphic>GTAGTTGCCTTGAAGCTTTTTTCTCTATTTTAACAAACTTTTGCTTGAAAAAAAACTCACATTTAAATGATGCATGGTTCGATTGAGCTCAATTGCCTTCTCTGCATTCTCTTCCAAAAATTGAACCAGCGATGGCACATCAACATTACATGGAATATACAGCCGACCATCGACTCCAATAGCCAACTCGTCATATGAAGTGACCACCTGGAATAATACTGGATTAAAATCAATCTGCTTTTTGTTGAAGACTTACTTCTAGCATTGAATTCTTCGCCGAATCCTCCACTCTTCGCAACAACGCCTCCTTCTTCCACACTCTTACTGTCAACGTCTGCAACTGAGTGAGTGTCTGAGCCAATCCTTTATTATGAGGCAGCAATATCTGTGCACCTCCAAACGTTTGCTCTAATTGTTTTGCAGTCTCTTTGAGAATTGGAATCTGATTTTTGCGAATCTGATACTCCTGACAGATTTGCTCCCATTGCTCTGGGACGTGRTCCGCTCCGAGTTGGATTGAACCATCACAGCAGATGAAGGATCCTCTTCCAAATCGTAGTACGTTTTTGAAAAAAGCCTTTTCAAGAATTATCCTAGTCTCTGGAACTGCTTGGTCAAGCATTCGGTTCACATTTGCAATGCATCGTCGCATATGAGATTGTTCCCAGTGCATTTGCCATACAACCTGAAGCATTCGGCACATTCTGTGTTGTTAATTTTCGGGTGATCTTTTAAAGCATCTTGTCAGCCACTCAAAAAATCAATATTTCAAGATCAAGTTTTGCTAGGTTCAAAAAGATACCGTATATTACAGAAATCGCCAAAAACTCACATCTTTCAGCTGCGTTCTATATTTCAAATCAGAAATATCCTCTTGAATCGAGACACGAAGTGTTTTCGCTTCTCTCTTTTTTCTCATTGCCTCATCGCGTTGATTGGTCAAAGAATCATAGAGATTCGTGATAACTGTGGCTTTCTTTCTTTTGAGGTACCTGAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>498 228 186 47 41</canonical_bands>
                <polymorphic_bands>539 228 186 47</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTATTATGAGGCAGCAATATCT</pcr_primer_p1>
		<pcr_primer_p2>GCAGTTCCAGAGACTAGGATAAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTATTATGAGGCAGCAATATCTGTGCACCTCCAAACGTTTGCTCTAATTGTTTTGCAGTCTCTTTGAGAATTGGAATCTGATTTTTGCGAATCTGATACTCCTGACAGATTTGCTCCCATTGCTCTGGGACGTGATCCGCTCCGAGTTGGATTGAACCATCACAGCAGATGAAGGATCCTCTTCCAAATCGTAGTACGTTTTTGAAAAAAGCCTTTTCAAGAATTATCCTAGTCTCTGGAACTGC</canonical_amplicon>
		<polymorphic_amplicon>TTTATTATGAGGCAGCAATATCTGTGCACCTCCAAACGTTTGCTCTAATTGTTTTGCAGTCTCTTTGAGAATTGGAATCTGATTTTTGCGAATCTGATACTCCTGACAGATTTGCTCCCATTGCTCTGGGACGTGRTCCGCTCCGAGTTGGATTGAACCATCACAGCAGATGAAGGATCCTCTTCCAAATCGTAGTACGTTTTTGAAAAAAGCCTTTTCAAGAATTATCCTAGTCTCTGGAACTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38539</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>384285</contig_pos>
        <strand>+</strand>
        <context>CAATTGAAAA[G/T]ACCTCCAACA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGGCATCCTGAAAATAATTTAAATTTTGAAAAGTGAGTGGCAATTGAAAA</left_flank>
        <right_flank>ACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACAATCTCCTGAACATCCTCCAGATTCCAAACCAACGATCCATCAGCGTTGTACTTGTCGAACGTTTCCACCACGTCACCGCCAACAATAAGAAGTACCTCAACGTCGGGTCCAAGGCGGATCTAAAAATGTTATATCATGTTCTCTGGGTCTAGTTAAATGATAATGATGATTTTATACCTTGACTTCTTGCTGATGATGTTTGAGCACGTTCAGAGTAGTGGTCCACACGGGCTGGGAGCATTCCCAACCGTCAGCGCGCAACCAATCAGAACTCTTCACTGCTGCTTCAGTCATGGCAAGTCTGAAAATATTTGGAAATGTCTAATATATATTTTTCAAGTTACCTGTGATTAGATCCAATCAACGTCGATTTTCCATACGCATCACTGACTGGACTCAAAATTCCCTCCACCACTTCTTTTCCAGATAATTCCAACGAGTTTTTGGCATCCTGAAAATAATTTAAATTTTGAAAAGTGAGTGGCAATTGAAAATACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCA</canonical>
            <polymorphic>ACACAATCTCCTGAACATCCTCCAGATTCCAAACCAACGATCCATCAGCGTTGTACTTGTCGAACGTTTCCACCACGTCACCGCCAACAATAAGAAGTACCTCAACGTCGGGTCCAAGGCGGATCTAAAAATGTTATATCATGTTCTCTGGGTCTAGTTAAATGATAATGATGATTTTATACCTTGACTTCTTGCTGATGATGTTTGAGCACGTTCAGAGTAGTGGTCCACACGGGCTGGGAGCATTCCCAACCGTCAGCGCGCAACCAATCAGAACTCTTCACTGCTGCTTCAGTCATGGCAAGTCTGAAAATATTTGGAAATGTCTAATATATATTTTTCAAGTTACCTGTGATTAGATCCAATCAACGTCGATTTTCCATACGCATCACTGACTGGACTCAAAATTCCCTCCACCACTTCTTTTCCAGATAATTCCAACGAGTTTTTGGCATCCTGAAAATAATTTAAATTTTGAAAAGTGAGTGGCAATTGAAAAKACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAGTTACCTGTGATTAGATCC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATGGAAAAGTCAAAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TCAAGTTACCTGTGATTAGATCCAATCAACGTCGATTTTCCATACGCATCACTGACTGGACTCAAAATTCCCTCCACCACTTCTTTTCCAGATAATTCCAACGAGTTTTTGGCATCCTGAAAATAATTTAAATTTTGAAAAGTGAGTGGCAATTGAAAATACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TCAAGTTACCTGTGATTAGATCCAATCAACGTCGATTTTCCATACGCATCACTGACTGGACTCAAAATTCCCTCCACCACTTCTTTTCCAGATAATTCCAACGAGTTTTTGGCATCCTGAAAATAATTTAAATTTTGAAAAGTGAGTGGCAATTGAAAAKACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38540</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>384300</contig_pos>
        <strand>+</strand>
        <context>CCAACATGCG[C/T]AAATGACCGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTAAATTTTGAAAAGTGAGTGGCAATTGAAAATACCTCCAACATGCG</left_flank>
        <right_flank>AAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCCTCCAGATTCCAAACCAACGATCCATCAGCGTTGTACTTGTCGAACGTTTCCACCACGTCACCGCCAACAATAAGAAGTACCTCAACGTCGGGTCCAAGGCGGATCTAAAAATGTTATATCATGTTCTCTGGGTCTAGTTAAATGATAATGATGATTTTATACCTTGACTTCTTGCTGATGATGTTTGAGCACGTTCAGAGTAGTGGTCCACACGGGCTGGGAGCATTCCCAACCGTCAGCGCGCAACCAATCAGAACTCTTCACTGCTGCTTCAGTCATGGCAAGTCTGAAAATATTTGGAAATGTCTAATATATATTTTTCAAGTTACCTGTGATTAGATCCAATCAACGTCGATTTTCCATACGCATCACTGACTGGACTCAAAATTCCCTCCACCACTTCTTTTCCAGATAATTCCAACGAGTTTTTGGCATCCTGAAAATAATTTAAATTTTGAAAAGTGAGTGGCAATTGAAAATACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTA</canonical>
            <polymorphic>CATCCTCCAGATTCCAAACCAACGATCCATCAGCGTTGTACTTGTCGAACGTTTCCACCACGTCACCGCCAACAATAAGAAGTACCTCAACGTCGGGTCCAAGGCGGATCTAAAAATGTTATATCATGTTCTCTGGGTCTAGTTAAATGATAATGATGATTTTATACCTTGACTTCTTGCTGATGATGTTTGAGCACGTTCAGAGTAGTGGTCCACACGGGCTGGGAGCATTCCCAACCGTCAGCGCGCAACCAATCAGAACTCTTCACTGCTGCTTCAGTCATGGCAAGTCTGAAAATATTTGGAAATGTCTAATATATATTTTTCAAGTTACCTGTGATTAGATCCAATCAACGTCGATTTTCCATACGCATCACTGACTGGACTCAAAATTCCCTCCACCACTTCTTTTCCAGATAATTCCAACGAGTTTTTGGCATCCTGAAAATAATTTAAATTTTGAAAAGTGAGTGGCAATTGAAAATACCTCCAACATGCGYAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCGCA</site>
                <isoschizomers>
                    <enzyme>Acc16I</enzyme>
                    <enzyme>AviII</enzyme>
                    <enzyme>FspI</enzyme>
                    <enzyme>MstI</enzyme>
                    <enzyme>NsbI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 251 246 2</canonical_bands>
                <polymorphic_bands>752 246 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAGTTACCTGTGATTAGATCC</pcr_primer_p1>
		<pcr_primer_p2>AAAAATGGAAAAGTCAAAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TCAAGTTACCTGTGATTAGATCCAATCAACGTCGATTTTCCATACGCATCACTGACTGGACTCAAAATTCCCTCCACCACTTCTTTTCCAGATAATTCCAACGAGTTTTTGGCATCCTGAAAATAATTTAAATTTTGAAAAGTGAGTGGCAATTGAAAATACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTT</canonical_amplicon>
		<polymorphic_amplicon>TCAAGTTACCTGTGATTAGATCCAATCAACGTCGATTTTCCATACGCATCACTGACTGGACTCAAAATTCCCTCCACCACTTCTTTTCCAGATAATTCCAACGAGTTTTTGGCATCCTGAAAATAATTTAAATTTTGAAAAGTGAGTGGCAATTGAAAATACCTCCAACATGCGYAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38541</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>384383</contig_pos>
        <strand>+</strand>
        <context>AACTTTATTC[A/G]TTTTTTTTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACAGCAAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTC</left_flank>
        <right_flank>TTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTCAACGTCGGGTCCAAGGCGGATCTAAAAATGTTATATCATGTTCTCTGGGTCTAGTTAAATGATAATGATGATTTTATACCTTGACTTCTTGCTGATGATGTTTGAGCACGTTCAGAGTAGTGGTCCACACGGGCTGGGAGCATTCCCAACCGTCAGCGCGCAACCAATCAGAACTCTTCACTGCTGCTTCAGTCATGGCAAGTCTGAAAATATTTGGAAATGTCTAATATATATTTTTCAAGTTACCTGTGATTAGATCCAATCAACGTCGATTTTCCATACGCATCACTGACTGGACTCAAAATTCCCTCCACCACTTCTTTTCCAGATAATTCCAACGAGTTTTTGGCATCCTGAAAATAATTTAAATTTTGAAAAGTGAGTGGCAATTGAAAATACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATT</canonical>
            <polymorphic>ACCTCAACGTCGGGTCCAAGGCGGATCTAAAAATGTTATATCATGTTCTCTGGGTCTAGTTAAATGATAATGATGATTTTATACCTTGACTTCTTGCTGATGATGTTTGAGCACGTTCAGAGTAGTGGTCCACACGGGCTGGGAGCATTCCCAACCGTCAGCGCGCAACCAATCAGAACTCTTCACTGCTGCTTCAGTCATGGCAAGTCTGAAAATATTTGGAAATGTCTAATATATATTTTTCAAGTTACCTGTGATTAGATCCAATCAACGTCGATTTTCCATACGCATCACTGACTGGACTCAAAATTCCCTCCACCACTTCTTTTCCAGATAATTCCAACGAGTTTTTGGCATCCTGAAAATAATTTAAATTTTGAAAAGTGAGTGGCAATTGAAAATACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCRTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAAATTTTGAAAAGTGAGTGG</pcr_primer_p1>
		<pcr_primer_p2>ACTCCTAAAATCATTAAATCTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTTAAATTTTGAAAAGTGAGTGGCAATTGAAAATACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGT</canonical_amplicon>
		<polymorphic_amplicon>TTTAAATTTTGAAAAGTGAGTGGCAATTGAAAATACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCRTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38542</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>384410</contig_pos>
        <strand>+</strand>
        <context>AAAAATTGAG[A/G]TGTRGAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAG</left_flank>
        <right_flank>TGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAAATGTTATATCATGTTCTCTGGGTCTAGTTAAATGATAATGATGATTTTATACCTTGACTTCTTGCTGATGATGTTTGAGCACGTTCAGAGTAGTGGTCCACACGGGCTGGGAGCATTCCCAACCGTCAGCGCGCAACCAATCAGAACTCTTCACTGCTGCTTCAGTCATGGCAAGTCTGAAAATATTTGGAAATGTCTAATATATATTTTTCAAGTTACCTGTGATTAGATCCAATCAACGTCGATTTTCCATACGCATCACTGACTGGACTCAAAATTCCCTCCACCACTTCTTTTCCAGATAATTCCAACGAGTTTTTGGCATCCTGAAAATAATTTAAATTTTGAAAAGTGAGTGGCAATTGAAAATACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTAAGTTTTTCATATTTCTTA</canonical>
            <polymorphic>TAAAAATGTTATATCATGTTCTCTGGGTCTAGTTAAATGATAATGATGATTTTATACCTTGACTTCTTGCTGATGATGTTTGAGCACGTTCAGAGTAGTGGTCCACACGGGCTGGGAGCATTCCCAACCGTCAGCGCGCAACCAATCAGAACTCTTCACTGCTGCTTCAGTCATGGCAAGTCTGAAAATATTTGGAAATGTCTAATATATATTTTTCAAGTTACCTGTGATTAGATCCAATCAACGTCGATTTTCCATACGCATCACTGACTGGACTCAAAATTCCCTCCACCACTTCTTTTCCAGATAATTCCAACGAGTTTTTGGCATCCTGAAAATAATTTAAATTTTGAAAAGTGAGTGGCAATTGAAAATACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGRTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTAAGTTTTTCATATTTCTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>262 112 86 76 71 65 63 52 51 50 37 25 14 11 9 5 4 3 2 2</canonical_bands>
                <polymorphic_bands>262 115 112 86 76 71 65 51 50 37 25 14 11 9 5 4 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGATTACCACTTTTGACTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAACATGTTGTCAATGATGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTT</canonical_amplicon>
		<polymorphic_amplicon>AAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGRTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38543</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>384414</contig_pos>
        <strand>+</strand>
        <context>ATTGAGRTGT[A/G]GAAAATRACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGT</left_flank>
        <right_flank>GAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGTTATATCATGTTCTCTGGGTCTAGTTAAATGATAATGATGATTTTATACCTTGACTTCTTGCTGATGATGTTTGAGCACGTTCAGAGTAGTGGTCCACACGGGCTGGGAGCATTCCCAACCGTCAGCGCGCAACCAATCAGAACTCTTCACTGCTGCTTCAGTCATGGCAAGTCTGAAAATATTTGGAAATGTCTAATATATATTTTTCAAGTTACCTGTGATTAGATCCAATCAACGTCGATTTTCCATACGCATCACTGACTGGACTCAAAATTCCCTCCACCACTTCTTTTCCAGATAATTCCAACGAGTTTTTGGCATCCTGAAAATAATTTAAATTTTGAAAAGTGAGTGGCAATTGAAAATACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTAAGTTTTTCATATTTCTTAACGA</canonical>
            <polymorphic>AATGTTATATCATGTTCTCTGGGTCTAGTTAAATGATAATGATGATTTTATACCTTGACTTCTTGCTGATGATGTTTGAGCACGTTCAGAGTAGTGGTCCACACGGGCTGGGAGCATTCCCAACCGTCAGCGCGCAACCAATCAGAACTCTTCACTGCTGCTTCAGTCATGGCAAGTCTGAAAATATTTGGAAATGTCTAATATATATTTTTCAAGTTACCTGTGATTAGATCCAATCAACGTCGATTTTCCATACGCATCACTGACTGGACTCAAAATTCCCTCCACCACTTCTTTTCCAGATAATTCCAACGAGTTTTTGGCATCCTGAAAATAATTTAAATTTTGAAAAGTGAGTGGCAATTGAAAATACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTRGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTAAGTTTTTCATATTTCTTAACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGATTACCACTTTTGACTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAACATGTTGTCAATGATGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTT</canonical_amplicon>
		<polymorphic_amplicon>AAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTRGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38544</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>384421</contig_pos>
        <strand></strand>
        <context>TGTRGAAAAT[G/A]ACGTATGATA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAAT</left_flank>
        <right_flank>ACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCATGTTCTCTGGGTCTAGTTAAATGATAATGATGATTTTATACCTTGACTTCTTGCTGATGATGTTTGAGCACGTTCAGAGTAGTGGTCCACACGGGCTGGGAGCATTCCCAACCGTCAGCGCGCAACCAATCAGAACTCTTCACTGCTGCTTCAGTCATGGCAAGTCTGAAAATATTTGGAAATGTCTAATATATATTTTTCAAGTTACCTGTGATTAGATCCAATCAACGTCGATTTTCCATACGCATCACTGACTGGACTCAAAATTCCCTCCACCACTTCTTTTCCAGATAATTCCAACGAGTTTTTGGCATCCTGAAAATAATTTAAATTTTGAAAAGTGAGTGGCAATTGAAAATACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTAAGTTTTTCATATTTCTTAACGAACATGGA</canonical>
            <polymorphic>TATCATGTTCTCTGGGTCTAGTTAAATGATAATGATGATTTTATACCTTGACTTCTTGCTGATGATGTTTGAGCACGTTCAGAGTAGTGGTCCACACGGGCTGGGAGCATTCCCAACCGTCAGCGCGCAACCAATCAGAACTCTTCACTGCTGCTTCAGTCATGGCAAGTCTGAAAATATTTGGAAATGTCTAATATATATTTTTCAAGTTACCTGTGATTAGATCCAATCAACGTCGATTTTCCATACGCATCACTGACTGGACTCAAAATTCCCTCCACCACTTCTTTTCCAGATAATTCCAACGAGTTTTTGGCATCCTGAAAATAATTTAAATTTTGAAAAGTGAGTGGCAATTGAAAATACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATRACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTAAGTTTTTCATATTTCTTAACGAACATGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGATTACCACTTTTGACTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAACATGTTGTCAATGATGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTT</canonical_amplicon>
		<polymorphic_amplicon>AAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATRACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38545</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>384444</contig_pos>
        <strand>+</strand>
        <context>TCTAAATGAA[A/G]ATTGTTATCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAA</left_flank>
        <right_flank>ATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATGATAATGATGATTTTATACCTTGACTTCTTGCTGATGATGTTTGAGCACGTTCAGAGTAGTGGTCCACACGGGCTGGGAGCATTCCCAACCGTCAGCGCGCAACCAATCAGAACTCTTCACTGCTGCTTCAGTCATGGCAAGTCTGAAAATATTTGGAAATGTCTAATATATATTTTTCAAGTTACCTGTGATTAGATCCAATCAACGTCGATTTTCCATACGCATCACTGACTGGACTCAAAATTCCCTCCACCACTTCTTTTCCAGATAATTCCAACGAGTTTTTGGCATCCTGAAAATAATTTAAATTTTGAAAAGTGAGTGGCAATTGAAAATACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTAAGTTTTTCATATTTCTTAACGAACATGGAAGCGAAAAATTTTCTCTATAGTC</canonical>
            <polymorphic>AAATGATAATGATGATTTTATACCTTGACTTCTTGCTGATGATGTTTGAGCACGTTCAGAGTAGTGGTCCACACGGGCTGGGAGCATTCCCAACCGTCAGCGCGCAACCAATCAGAACTCTTCACTGCTGCTTCAGTCATGGCAAGTCTGAAAATATTTGGAAATGTCTAATATATATTTTTCAAGTTACCTGTGATTAGATCCAATCAACGTCGATTTTCCATACGCATCACTGACTGGACTCAAAATTCCCTCCACCACTTCTTTTCCAGATAATTCCAACGAGTTTTTGGCATCCTGAAAATAATTTAAATTTTGAAAAGTGAGTGGCAATTGAAAATACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAARATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTAAGTTTTTCATATTTCTTAACGAACATGGAAGCGAAAAATTTTCTCTATAGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATNNNNATC</site>
                <isoschizomers>
                    <enzyme>BsaBI</enzyme>
                    <enzyme>Bse8I</enzyme>
                    <enzyme>BseJI</enzyme>
                    <enzyme>BsiBI</enzyme>
                    <enzyme>BsrBRI</enzyme>
                    <enzyme>MamI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGATTACCACTTTTGACTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAACATGTTGTCAATGATGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTT</canonical_amplicon>
		<polymorphic_amplicon>AAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAARATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38546</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>384533</contig_pos>
        <strand>+</strand>
        <context>AAATATAGTC[C/T]TAAAATAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTC</left_flank>
        <right_flank>TAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAACCGTCAGCGCGCAACCAATCAGAACTCTTCACTGCTGCTTCAGTCATGGCAAGTCTGAAAATATTTGGAAATGTCTAATATATATTTTTCAAGTTACCTGTGATTAGATCCAATCAACGTCGATTTTCCATACGCATCACTGACTGGACTCAAAATTCCCTCCACCACTTCTTTTCCAGATAATTCCAACGAGTTTTTGGCATCCTGAAAATAATTTAAATTTTGAAAAGTGAGTGGCAATTGAAAATACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTAAGTTTTTCATATTTCTTAACGAACATGGAAGCGAAAAATTTTCTCTATAGTCTAAGAAGAAAAAAATCTGATTTTGATCGTAAATTCCTTCGAAAAATTTCGAAAATAAGAAAAACAATTGGAAAACCGTTTTTTTAACCA</canonical>
            <polymorphic>CCAACCGTCAGCGCGCAACCAATCAGAACTCTTCACTGCTGCTTCAGTCATGGCAAGTCTGAAAATATTTGGAAATGTCTAATATATATTTTTCAAGTTACCTGTGATTAGATCCAATCAACGTCGATTTTCCATACGCATCACTGACTGGACTCAAAATTCCCTCCACCACTTCTTTTCCAGATAATTCCAACGAGTTTTTGGCATCCTGAAAATAATTTAAATTTTGAAAAGTGAGTGGCAATTGAAAATACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCYTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTAAGTTTTTCATATTTCTTAACGAACATGGAAGCGAAAAATTTTCTCTATAGTCTAAGAAGAAAAAAATCTGATTTTGATCGTAAATTCCTTCGAAAAATTTCGAAAATAAGAAAAACAATTGGAAAACCGTTTTTTTAACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGGATTACCACTTTTGACTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAACATGTTGTCAATGATGAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTT</canonical_amplicon>
		<polymorphic_amplicon>AAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCYTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38547</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>384599</contig_pos>
        <strand>+</strand>
        <context>TGATTGTTTT[C/T]AGTTGCTAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTT</left_flank>
        <right_flank>AGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGGAAATGTCTAATATATATTTTTCAAGTTACCTGTGATTAGATCCAATCAACGTCGATTTTCCATACGCATCACTGACTGGACTCAAAATTCCCTCCACCACTTCTTTTCCAGATAATTCCAACGAGTTTTTGGCATCCTGAAAATAATTTAAATTTTGAAAAGTGAGTGGCAATTGAAAATACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTAAGTTTTTCATATTTCTTAACGAACATGGAAGCGAAAAATTTTCTCTATAGTCTAAGAAGAAAAAAATCTGATTTTGATCGTAAATTCCTTCGAAAAATTTCGAAAATAAGAAAAACAATTGGAAAACCGTTTTTTTAACCATTTTTCTCAAGTTTAATCTTATTAAAGACAATAAAATCAGTTAATGATTCATTTTTCAGGGTTACA</canonical>
            <polymorphic>ATTTGGAAATGTCTAATATATATTTTTCAAGTTACCTGTGATTAGATCCAATCAACGTCGATTTTCCATACGCATCACTGACTGGACTCAAAATTCCCTCCACCACTTCTTTTCCAGATAATTCCAACGAGTTTTTGGCATCCTGAAAATAATTTAAATTTTGAAAAGTGAGTGGCAATTGAAAATACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTYAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTAAGTTTTTCATATTTCTTAACGAACATGGAAGCGAAAAATTTTCTCTATAGTCTAAGAAGAAAAAAATCTGATTTTGATCGTAAATTCCTTCGAAAAATTTCGAAAATAAGAAAAACAATTGGAAAACCGTTTTTTTAACCATTTTTCTCAAGTTTAATCTTATTAAAGACAATAAAATCAGTTAATGATTCATTTTTCAGGGTTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCACATTCTCAGAAGATTTAATG</pcr_primer_p1>
		<pcr_primer_p2>CTGAGAATCGAGGAAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAG</canonical_amplicon>
		<polymorphic_amplicon>GCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTYAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38548</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>384637</contig_pos>
        <strand>+</strand>
        <context>CTTGCATATG[C/T]TTTTTTGTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATG</left_flank>
        <right_flank>TTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATTAGATCCAATCAACGTCGATTTTCCATACGCATCACTGACTGGACTCAAAATTCCCTCCACCACTTCTTTTCCAGATAATTCCAACGAGTTTTTGGCATCCTGAAAATAATTTAAATTTTGAAAAGTGAGTGGCAATTGAAAATACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTAAGTTTTTCATATTTCTTAACGAACATGGAAGCGAAAAATTTTCTCTATAGTCTAAGAAGAAAAAAATCTGATTTTGATCGTAAATTCCTTCGAAAAATTTCGAAAATAAGAAAAACAATTGGAAAACCGTTTTTTTAACCATTTTTCTCAAGTTTAATCTTATTAAAGACAATAAAATCAGTTAATGATTCATTTTTCAGGGTTACAACAATGCTTTCGCGTCCATCGGCCACAGTTGCGGTGAG</canonical>
            <polymorphic>TGATTAGATCCAATCAACGTCGATTTTCCATACGCATCACTGACTGGACTCAAAATTCCCTCCACCACTTCTTTTCCAGATAATTCCAACGAGTTTTTGGCATCCTGAAAATAATTTAAATTTTGAAAAGTGAGTGGCAATTGAAAATACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGYTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTAAGTTTTTCATATTTCTTAACGAACATGGAAGCGAAAAATTTTCTCTATAGTCTAAGAAGAAAAAAATCTGATTTTGATCGTAAATTCCTTCGAAAAATTTCGAAAATAAGAAAAACAATTGGAAAACCGTTTTTTTAACCATTTTTCTCAAGTTTAATCTTATTAAAGACAATAAAATCAGTTAATGATTCATTTTTCAGGGTTACAACAATGCTTTCGCGTCCATCGGCCACAGTTGCGGTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCACATTCTCAGAAGATTTAATG</pcr_primer_p1>
		<pcr_primer_p2>CTGAGAATCGAGGAAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAG</canonical_amplicon>
		<polymorphic_amplicon>GCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGYTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38549</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>384652</contig_pos>
        <strand></strand>
        <context>TTGTTGTTTT[T/C]CGTCAATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTT</left_flank>
        <right_flank>CGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGTCGATTTTCCATACGCATCACTGACTGGACTCAAAATTCCCTCCACCACTTCTTTTCCAGATAATTCCAACGAGTTTTTGGCATCCTGAAAATAATTTAAATTTTGAAAAGTGAGTGGCAATTGAAAATACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTAAGTTTTTCATATTTCTTAACGAACATGGAAGCGAAAAATTTTCTCTATAGTCTAAGAAGAAAAAAATCTGATTTTGATCGTAAATTCCTTCGAAAAATTTCGAAAATAAGAAAAACAATTGGAAAACCGTTTTTTTAACCATTTTTCTCAAGTTTAATCTTATTAAAGACAATAAAATCAGTTAATGATTCATTTTTCAGGGTTACAACAATGCTTTCGCGTCCATCGGCCACAGTTGCGGTGAGTTTTAAAATATATAG</canonical>
            <polymorphic>AACGTCGATTTTCCATACGCATCACTGACTGGACTCAAAATTCCCTCCACCACTTCTTTTCCAGATAATTCCAACGAGTTTTTGGCATCCTGAAAATAATTTAAATTTTGAAAAGTGAGTGGCAATTGAAAATACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTYCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTAAGTTTTTCATATTTCTTAACGAACATGGAAGCGAAAAATTTTCTCTATAGTCTAAGAAGAAAAAAATCTGATTTTGATCGTAAATTCCTTCGAAAAATTTCGAAAATAAGAAAAACAATTGGAAAACCGTTTTTTTAACCATTTTTCTCAAGTTTAATCTTATTAAAGACAATAAAATCAGTTAATGATTCATTTTTCAGGGTTACAACAATGCTTTCGCGTCCATCGGCCACAGTTGCGGTGAGTTTTAAAATATATAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCACATTCTCAGAAGATTTAATG</pcr_primer_p1>
		<pcr_primer_p2>CTGAGAATCGAGGAAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAG</canonical_amplicon>
		<polymorphic_amplicon>GCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTYCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38550</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>384690</contig_pos>
        <strand>+</strand>
        <context>AATGACTCAT[C/T]CAGTTTTCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCAT</left_flank>
        <right_flank>CAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCCCTCCACCACTTCTTTTCCAGATAATTCCAACGAGTTTTTGGCATCCTGAAAATAATTTAAATTTTGAAAAGTGAGTGGCAATTGAAAATACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTAAGTTTTTCATATTTCTTAACGAACATGGAAGCGAAAAATTTTCTCTATAGTCTAAGAAGAAAAAAATCTGATTTTGATCGTAAATTCCTTCGAAAAATTTCGAAAATAAGAAAAACAATTGGAAAACCGTTTTTTTAACCATTTTTCTCAAGTTTAATCTTATTAAAGACAATAAAATCAGTTAATGATTCATTTTTCAGGGTTACAACAATGCTTTCGCGTCCATCGGCCACAGTTGCGGTGAGTTTTAAAATATATAGAAGCTGATTATTTGAAAAATGAATGATTCTTCATGGGA</canonical>
            <polymorphic>AATTCCCTCCACCACTTCTTTTCCAGATAATTCCAACGAGTTTTTGGCATCCTGAAAATAATTTAAATTTTGAAAAGTGAGTGGCAATTGAAAATACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATYCAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTAAGTTTTTCATATTTCTTAACGAACATGGAAGCGAAAAATTTTCTCTATAGTCTAAGAAGAAAAAAATCTGATTTTGATCGTAAATTCCTTCGAAAAATTTCGAAAATAAGAAAAACAATTGGAAAACCGTTTTTTTAACCATTTTTCTCAAGTTTAATCTTATTAAAGACAATAAAATCAGTTAATGATTCATTTTTCAGGGTTACAACAATGCTTTCGCGTCCATCGGCCACAGTTGCGGTGAGTTTTAAAATATATAGAAGCTGATTATTTGAAAAATGAATGATTCTTCATGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACAACATGTTTTGATTGTTT</pcr_primer_p1>
		<pcr_primer_p2>TAGTCGAAAAATGGCTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>317</pcr_amplicon_size>
		<canonical_amplicon>TGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTA</canonical_amplicon>
		<polymorphic_amplicon>TGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATYCAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38551</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>384742</contig_pos>
        <strand>+</strand>
        <context>CTCACTTTTC[G/T]CATATATAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTC</left_flank>
        <right_flank>CATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGG</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAATAATTTAAATTTTGAAAAGTGAGTGGCAATTGAAAATACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTAAGTTTTTCATATTTCTTAACGAACATGGAAGCGAAAAATTTTCTCTATAGTCTAAGAAGAAAAAAATCTGATTTTGATCGTAAATTCCTTCGAAAAATTTCGAAAATAAGAAAAACAATTGGAAAACCGTTTTTTTAACCATTTTTCTCAAGTTTAATCTTATTAAAGACAATAAAATCAGTTAATGATTCATTTTTCAGGGTTACAACAATGCTTTCGCGTCCATCGGCCACAGTTGCGGTGAGTTTTAAAATATATAGAAGCTGATTATTTGAAAAATGAATGATTCTTCATGGGAAAATGGATAAAAAGCCAGTTGTCACTAGAAAGAAGAAGAGATAATGTTAAAA</canonical>
            <polymorphic>TGAAAATAATTTAAATTTTGAAAAGTGAGTGGCAATTGAAAATACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCKCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTAAGTTTTTCATATTTCTTAACGAACATGGAAGCGAAAAATTTTCTCTATAGTCTAAGAAGAAAAAAATCTGATTTTGATCGTAAATTCCTTCGAAAAATTTCGAAAATAAGAAAAACAATTGGAAAACCGTTTTTTTAACCATTTTTCTCAAGTTTAATCTTATTAAAGACAATAAAATCAGTTAATGATTCATTTTTCAGGGTTACAACAATGCTTTCGCGTCCATCGGCCACAGTTGCGGTGAGTTTTAAAATATATAGAAGCTGATTATTTGAAAAATGAATGATTCTTCATGGGAAAATGGATAAAAAGCCAGTTGTCACTAGAAAGAAGAAGAGATAATGTTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTTCCTCGATTCTCAG</pcr_primer_p1>
		<pcr_primer_p2>TTAGTCGAAAAATGGCTTGA</pcr_primer_p2>
		<pcr_amplicon_size>203</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTAA</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCKCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38552</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>384768</contig_pos>
        <strand>+</strand>
        <context>GGAGGCCGGG[A/G]AAGAGAAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGG</left_flank>
        <right_flank>AAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTAC</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGTGGCAATTGAAAATACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTAAGTTTTTCATATTTCTTAACGAACATGGAAGCGAAAAATTTTCTCTATAGTCTAAGAAGAAAAAAATCTGATTTTGATCGTAAATTCCTTCGAAAAATTTCGAAAATAAGAAAAACAATTGGAAAACCGTTTTTTTAACCATTTTTCTCAAGTTTAATCTTATTAAAGACAATAAAATCAGTTAATGATTCATTTTTCAGGGTTACAACAATGCTTTCGCGTCCATCGGCCACAGTTGCGGTGAGTTTTAAAATATATAGAAGCTGATTATTTGAAAAATGAATGATTCTTCATGGGAAAATGGATAAAAAGCCAGTTGTCACTAGAAAGAAGAAGAGATAATGTTAAAAACTAGCAAAAATCGTTCAATCTTATT</canonical>
            <polymorphic>GAGTGGCAATTGAAAATACCTCCAACATGCGCAAATGACCGAAAGTTGGCGGATTGAAAGACCCGACAGCAAGGATTACCACTTTTGACTTTTCCATTTTTTTGAACTTTATTCTTTTTTTTTATTCCTGAAAAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGRAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTAAGTTTTTCATATTTCTTAACGAACATGGAAGCGAAAAATTTTCTCTATAGTCTAAGAAGAAAAAAATCTGATTTTGATCGTAAATTCCTTCGAAAAATTTCGAAAATAAGAAAAACAATTGGAAAACCGTTTTTTTAACCATTTTTCTCAAGTTTAATCTTATTAAAGACAATAAAATCAGTTAATGATTCATTTTTCAGGGTTACAACAATGCTTTCGCGTCCATCGGCCACAGTTGCGGTGAGTTTTAAAATATATAGAAGCTGATTATTTGAAAAATGAATGATTCTTCATGGGAAAATGGATAAAAAGCCAGTTGTCACTAGAAAGAAGAAGAGATAATGTTAAAAACTAGCAAAAATCGTTCAATCTTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTTCCTCGATTCTCAG</pcr_primer_p1>
		<pcr_primer_p2>TTAGTCGAAAAATGGCTTGA</pcr_primer_p2>
		<pcr_amplicon_size>203</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTAA</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGRAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38553</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>384900</contig_pos>
        <strand>+</strand>
        <context>CTAAGTTTTT[C/T]ATATTTCTTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTAAGTTTTT</left_flank>
        <right_flank>ATATTTCTTAACGAACATGGAAGCGAAAAATTTTCTCTATAGTCTAAGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTAAGTTTTTCATATTTCTTAACGAACATGGAAGCGAAAAATTTTCTCTATAGTCTAAGAAGAAAAAAATCTGATTTTGATCGTAAATTCCTTCGAAAAATTTCGAAAATAAGAAAAACAATTGGAAAACCGTTTTTTTAACCATTTTTCTCAAGTTTAATCTTATTAAAGACAATAAAATCAGTTAATGATTCATTTTTCAGGGTTACAACAATGCTTTCGCGTCCATCGGCCACAGTTGCGGTGAGTTTTAAAATATATAGAAGCTGATTATTTGAAAAATGAATGATTCTTCATGGGAAAATGGATAAAAAGCCAGTTGTCACTAGAAAGAAGAAGAGATAATGTTAAAAACTAGCAAAAATCGTTCAATCTTATTTTCTTGAGCTGATCAGAGAAAAAGGAAAAAAAAATCTGACCACAATTTCATCAAATCTAATCTTCTCGATTCTCACTATCTTATCGATTTTTGCCCAGAGGTTCCATAGATTGAATAAGAAGAAAACGATGA</canonical>
            <polymorphic>AAAATTGAGGTGTAGAAAATGACGTATGATAACTCTAAATGAAGATTGTTATCAGTAATTTGCACATTCTCAGAAGATTTAATGATTTTAGGAGTACAAATTATAAATGTTCAAGTCATAGAAAATATAGTCCTAAAATAAAAAAATTCGAAGCGAAAAATGGCATTTTCATCATTGACAACATGTTTTGATTGTTTTCAGTTGCTAAATGATGCATTTCAAAATGCTTGCATATGTTTTTTTGTTGTTTTTCGTCAATTTTATAACAGTTCCATTCCCAATGACTCATTCAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTAAGTTTTTYATATTTCTTAACGAACATGGAAGCGAAAAATTTTCTCTATAGTCTAAGAAGAAAAAAATCTGATTTTGATCGTAAATTCCTTCGAAAAATTTCGAAAATAAGAAAAACAATTGGAAAACCGTTTTTTTAACCATTTTTCTCAAGTTTAATCTTATTAAAGACAATAAAATCAGTTAATGATTCATTTTTCAGGGTTACAACAATGCTTTCGCGTCCATCGGCCACAGTTGCGGTGAGTTTTAAAATATATAGAAGCTGATTATTTGAAAAATGAATGATTCTTCATGGGAAAATGGATAAAAAGCCAGTTGTCACTAGAAAGAAGAAGAGATAATGTTAAAAACTAGCAAAAATCGTTCAATCTTATTTTCTTGAGCTGATCAGAGAAAAAGGAAAAAAAAATCTGACCACAATTTCATCAAATCTAATCTTCTCGATTCTCACTATCTTATCGATTTTTGCCCAGAGGTTCCATAGATTGAATAAGAAGAAAACGATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTTCCTCGATTCTCAG</pcr_primer_p1>
		<pcr_primer_p2>GGAATTTACGATCAAAATCAGA</pcr_primer_p2>
		<pcr_amplicon_size>290</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTAAGTTTTTCATATTTCTTAACGAACATGGAAGCGAAAAATTTTCTCTATAGTCTAAGAAGAAAAAAATCTGATTTTGATCGTAAATTCC</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTTCCTCGATTCTCAGGCATTTGTTGGCCCCACTCCCCTCACTTTTCGCATATATAGGCTACCGGAGGCCGGGAAAGAGAAAACTCGGCCACGGCAGGGGTGTGTAAACGCGCTCCGCCGCTACGCCGCTGGGAAGAGACGGACATTTTTTATCGGCCGCCCAACAGTTTTTAACCGTTTCAAGCCATTTTTCGACTAAGTTTTTYATATTTCTTAACGAACATGGAAGCGAAAAATTTTCTCTATAGTCTAAGAAGAAAAAAATCTGATTTTGATCGTAAATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38554</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>386760</contig_pos>
        <strand>+</strand>
        <context>GTGAGCTGCA[A/C]TAATTTGTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CGGAGGAGAGGTCCGCAAGTAAGTGATCTATGATTCGTTTGTGAGCTGCA</left_flank>
        <right_flank>TAATTTGTGAGCTACAAACATGACTGGAATTTCTTTGAATCTCATCAGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGCTCTCCCTCCTCGGACAACTTGGCAACAACGCCTTCAAGCCATGGGAAGTTGAAGACGTCAAGCACGACACCCTTCCAGCCGACGCCACATACCTCACCGGAACCACTATCACCTTCGAACAACTCCACCAAGCCGCCTTCAGAAACGGAGGACTTGGACTTTCCAACTACAGTGTCAACAACATCAGCGCCAAGGATTTGACCGCTTTCGCTGTGAGTTTTTTATTATTATCGGGATCTTGCCCAGCTGGCGTTGACTAAGTAGCTCTTGCCAAAATTCTTTGAGTCAACAATCAAAATGTAGCATTTCAGGAGCAAAGACTTCTCGCCGGAGACGCTGTTCTCGTTGGAGTCAACGTTGACCATGACACCCTCGTACAAGCTGGAAGCTCCCAGTTCCCACTTGCTCAAGGATCTGCCGCTCAGGCCGCACCAGCCAAGTACTTCGGAGGAGAGGTCCGCAAGTAAGTGATCTATGATTCGTTTGTGAGCTGCAATAATTTGTGAGCTACAAACATGACTGGAATTTCTTTGAATCTCATCAGCAGTGATGTCCCAAAGTTGTTTCAATGACATTTCTTCAAAACTTTGTTTTCCAGAGACGGACGTGGAGCCAGAACCTACGTTGCCATCGCCGGAGAAGGATCCGCTATCACATCCGTCAAGGATGTTGCCACCCAAGCCGTCGTTGCTCAAATCCTTCTGACCGCTGCCGAGAAGGTCACATCCGAAGCCATCTCTGTCAATGTCAACTACCAAGACGCTGGACTTGTCGGAGTTCAATTTGCTGCTGACAACACTAACATCACCGCGGTCACAAAGTCTATTGCCGCTGCTATCAAGTCTGCTAATGCTAACGGACTTGACACTGCCAAGAACACAGCAGCGGTTAAGGTGGGTGAAGTATCTTTCTTCTTGGAGGACATTGAGCAAAGACTAGTGTGAAGAAGTCGCGAAGTGCACAAAAACTGATCCCTTGACCCGATTCCTATGTAAC</canonical>
            <polymorphic>GCGCTCTCCCTCCTCGGACAACTTGGCAACAACGCCTTCAAGCCATGGGAAGTTGAAGACGTCAAGCACGACACCCTTCCAGCCGACGCCACATACCTCACCGGAACCACTATCACCTTCGAACAACTCCACCAAGCCGCCTTCAGAAACGGAGGACTTGGACTTTCCAACTACAGTGTCAACAACATCAGCGCCAAGGATTTGACCGCTTTCGCTGTGAGTTTTTTATTATTATCGGGATCTTGCCCAGCTGGCGTTGACTAAGTAGCTCTTGCCAAAATTCTTTGAGTCAACAATCAAAATGTAGCATTTCAGGAGCAAAGACTTCTCGCCGGAGACGCTGTTCTCGTTGGAGTCAACGTTGACCATGACACCCTCGTACAAGCTGGAAGCTCCCAGTTCCCACTTGCTCAAGGATCTGCCGCTCAGGCCGCACCAGCCAAGTACTTCGGAGGAGAGGTCCGCAAGTAAGTGATCTATGATTCGTTTGTGAGCTGCAMTAATTTGTGAGCTACAAACATGACTGGAATTTCTTTGAATCTCATCAGCAGTGATGTCCCAAAGTTGTTTCAATGACATTTCTTCAAAACTTTGTTTTCCAGAGACGGACGTGGAGCCAGAACCTACGTTGCCATCGCCGGAGAAGGATCCGCTATCACATCCGTCAAGGATGTTGCCACCCAAGCCGTCGTTGCTCAAATCCTTCTGACCGCTGCCGAGAAGGTCACATCCGAAGCCATCTCTGTCAATGTCAACTACCAAGACGCTGGACTTGTCGGAGTTCAATTTGCTGCTGACAACACTAACATCACCGCGGTCACAAAGTCTATTGCCGCTGCTATCAAGTCTGCTAATGCTAACGGACTTGACACTGCCAAGAACACAGCAGCGGTTAAGGTGGGTGAAGTATCTTTCTTCTTGGAGGACATTGAGCAAAGACTAGTGTGAAGAAGTCGCGAAGTGCACAAAAACTGATCCCTTGACCCGATTCCTATGTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGCATTTCAGGAGCAAAG</pcr_primer_p1>
		<pcr_primer_p2>ACTGCTGATGAGATTCAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTAGCATTTCAGGAGCAAAGACTTCTCGCCGGAGACGCTGTTCTCGTTGGAGTCAACGTTGACCATGACACCCTCGTACAAGCTGGAAGCTCCCAGTTCCCACTTGCTCAAGGATCTGCCGCTCAGGCCGCACCAGCCAAGTACTTCGGAGGAGAGGTCCGCAAGTAAGTGATCTATGATTCGTTTGTGAGCTGCAATAATTTGTGAGCTACAAACATGACTGGAATTTCTTTGAATCTCATCAGCAGT</canonical_amplicon>
		<polymorphic_amplicon>GTAGCATTTCAGGAGCAAAGACTTCTCGCCGGAGACGCTGTTCTCGTTGGAGTCAACGTTGACCATGACACCCTCGTACAAGCTGGAAGCTCCCAGTTCCCACTTGCTCAAGGATCTGCCGCTCAGGCCGCACCAGCCAAGTACTTCGGAGGAGAGGTCCGCAAGTAAGTGATCTATGATTCGTTTGTGAGCTGCAMTAATTTGTGAGCTACAAACATGACTGGAATTTCTTTGAATCTCATCAGCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38555</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>419071</contig_pos>
        <strand></strand>
        <context>aagttacagt[T/C]agaaaacctg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGT</left_flank>
        <right_flank>AGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGGCCAGTACT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACTATAGAAGATTTCTGTGAATAAGGCTAATGCTTTTCAGATATACAGTACTGGCCAAAAAGAATGCGTCGACAGGACTGTAACTTTCTTCAAAATGGAGCTACAGAGTCAAACTTTTTTTAAAATGTAGCAAATAACCCTGCAAAAGATGTTCTGAAACATTTTTACTCAAAAAACGGAAAACAACTTTTTTGGCGACAAAATTCACTTTTTGGAGAATTTCGGATTTTTGGATCTTTTGTTGTCAAAAATCTGACGATTATGAATGTGTAAAATTAATTTTGATCTTGATTTAAAAAATTATTCATCATCGTTTTCTATTTTTTCCAAATTTTTGAAAAAAAAATTTTTAAAAACCCGAAATTTTCCAAAAAGTGAATTTTGTCGCCAAAAAAGTTGCTTTCCGTTTTCTGGGTTTCAGAATAGTTTTTTAAAGTTATTTGCTACATTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGA</canonical>
            <polymorphic>AACTATAGAAGATTTCTGTGAATAAGGCTAATGCTTTTCAGATATACAGTACTGGCCAAAAAGAATGCGTCGACAGGACTGTAACTTTCTTCAAAATGGAGCTACAGAGTCAAACTTTTTTTAAAATGTAGCAAATAACCCTGCAAAAGATGTTCTGAAACATTTTTACTCAAAAAACGGAAAACAACTTTTTTGGCGACAAAATTCACTTTTTGGAGAATTTCGGATTTTTGGATCTTTTGTTGTCAAAAATCTGACGATTATGAATGTGTAAAATTAATTTTGATCTTGATTTAAAAAATTATTCATCATCGTTTTCTATTTTTTCCAAATTTTTGAAAAAAAAATTTTTAAAAACCCGAAATTTTCCAAAAAGTGAATTTTGTCGCCAAAAAAGTTGCTTTCCGTTTTCTGGGTTTCAGAATAGTTTTTTAAAGTTATTTGCTACATTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTYAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAGGCTAATGCTTTTCAGATA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTGAACGGTGTATTTTATTT</pcr_primer_p2>
		<pcr_amplicon_size>613</pcr_amplicon_size>
		<canonical_amplicon>ATAAGGCTAATGCTTTTCAGATATACAGTACTGGCCAAAAAGAATGCGTCGACAGGACTGTAACTTTCTTCAAAATGGAGCTACAGAGTCAAACTTTTTTTAAAATGTAGCAAATAACCCTGCAAAAGATGTTCTGAAACATTTTTACTCAAAAAACGGAAAACAACTTTTTTGGCGACAAAATTCACTTTTTGGAGAATTTCGGATTTTTGGATCTTTTGTTGTCAAAAATCTGACGATTATGAATGTGTAAAATTAATTTTGATCTTGATTTAAAAAATTATTCATCATCGTTTTCTATTTTTTCCAAATTTTTGAAAAAAAAATTTTTAAAAACCCGAAATTTTCCAAAAAGTGAATTTTGTCGCCAAAAAAGTTGCTTTCCGTTTTCTGGGTTTCAGAATAGTTTTTTAAAGTTATTTGCTACATTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAAC</canonical_amplicon>
		<polymorphic_amplicon>ATAAGGCTAATGCTTTTCAGATATACAGTACTGGCCAAAAAGAATGCGTCGACAGGACTGTAACTTTCTTCAAAATGGAGCTACAGAGTCAAACTTTTTTTAAAATGTAGCAAATAACCCTGCAAAAGATGTTCTGAAACATTTTTACTCAAAAAACGGAAAACAACTTTTTTGGCGACAAAATTCACTTTTTGGAGAATTTCGGATTTTTGGATCTTTTGTTGTCAAAAATCTGACGATTATGAATGTGTAAAATTAATTTTGATCTTGATTTAAAAAATTATTCATCATCGTTTTCTATTTTTTCCAAATTTTTGAAAAAAAAATTTTTAAAAACCCGAAATTTTCCAAAAAGTGAATTTTGTCGCCAAAAAAGTTGCTTTCCGTTTTCTGGGTTTCAGAATAGTTTTTTAAAGTTATTTGCTACATTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTYAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38556</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>419090</contig_pos>
        <strand></strand>
        <context>tgttcagtcg[G/A]cagtgtckac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCG</left_flank>
        <right_flank>CAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATAAGGCTAATGCTTTTCAGATATACAGTACTGGCCAAAAAGAATGCGTCGACAGGACTGTAACTTTCTTCAAAATGGAGCTACAGAGTCAAACTTTTTTTAAAATGTAGCAAATAACCCTGCAAAAGATGTTCTGAAACATTTTTACTCAAAAAACGGAAAACAACTTTTTTGGCGACAAAATTCACTTTTTGGAGAATTTCGGATTTTTGGATCTTTTGTTGTCAAAAATCTGACGATTATGAATGTGTAAAATTAATTTTGATCTTGATTTAAAAAATTATTCATCATCGTTTTCTATTTTTTCCAAATTTTTGAAAAAAAAATTTTTAAAAACCCGAAATTTTCCAAAAAGTGAATTTTGTCGCCAAAAAAGTTGCTTTCCGTTTTCTGGGTTTCAGAATAGTTTTTTAAAGTTATTTGCTACATTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCA</canonical>
            <polymorphic>GAATAAGGCTAATGCTTTTCAGATATACAGTACTGGCCAAAAAGAATGCGTCGACAGGACTGTAACTTTCTTCAAAATGGAGCTACAGAGTCAAACTTTTTTTAAAATGTAGCAAATAACCCTGCAAAAGATGTTCTGAAACATTTTTACTCAAAAAACGGAAAACAACTTTTTTGGCGACAAAATTCACTTTTTGGAGAATTTCGGATTTTTGGATCTTTTGTTGTCAAAAATCTGACGATTATGAATGTGTAAAATTAATTTTGATCTTGATTTAAAAAATTATTCATCATCGTTTTCTATTTTTTCCAAATTTTTGAAAAAAAAATTTTTAAAAACCCGAAATTTTCCAAAAAGTGAATTTTGTCGCCAAAAAAGTTGCTTTCCGTTTTCTGGGTTTCAGAATAGTTTTTTAAAGTTATTTGCTACATTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGRCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAAGGCTAATGCTTTTCAGATA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTGAACGGTGTATTTTATTT</pcr_primer_p2>
		<pcr_amplicon_size>613</pcr_amplicon_size>
		<canonical_amplicon>ATAAGGCTAATGCTTTTCAGATATACAGTACTGGCCAAAAAGAATGCGTCGACAGGACTGTAACTTTCTTCAAAATGGAGCTACAGAGTCAAACTTTTTTTAAAATGTAGCAAATAACCCTGCAAAAGATGTTCTGAAACATTTTTACTCAAAAAACGGAAAACAACTTTTTTGGCGACAAAATTCACTTTTTGGAGAATTTCGGATTTTTGGATCTTTTGTTGTCAAAAATCTGACGATTATGAATGTGTAAAATTAATTTTGATCTTGATTTAAAAAATTATTCATCATCGTTTTCTATTTTTTCCAAATTTTTGAAAAAAAAATTTTTAAAAACCCGAAATTTTCCAAAAAGTGAATTTTGTCGCCAAAAAAGTTGCTTTCCGTTTTCTGGGTTTCAGAATAGTTTTTTAAAGTTATTTGCTACATTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAAC</canonical_amplicon>
		<polymorphic_amplicon>ATAAGGCTAATGCTTTTCAGATATACAGTACTGGCCAAAAAGAATGCGTCGACAGGACTGTAACTTTCTTCAAAATGGAGCTACAGAGTCAAACTTTTTTTAAAATGTAGCAAATAACCCTGCAAAAGATGTTCTGAAACATTTTTACTCAAAAAACGGAAAACAACTTTTTTGGCGACAAAATTCACTTTTTGGAGAATTTCGGATTTTTGGATCTTTTGTTGTCAAAAATCTGACGATTATGAATGTGTAAAATTAATTTTGATCTTGATTTAAAAAATTATTCATCATCGTTTTCTATTTTTTCCAAATTTTTGAAAAAAAAATTTTTAAAAACCCGAAATTTTCCAAAAAGTGAATTTTGTCGCCAAAAAAGTTGCTTTCCGTTTTCTGGGTTTCAGAATAGTTTTTTAAAGTTATTTGCTACATTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGRCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38557</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>419098</contig_pos>
        <strand></strand>
        <context>cgrcagtgtc[G/T]acgcattctt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTC</left_flank>
        <right_flank>ACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAATGCTTTTCAGATATACAGTACTGGCCAAAAAGAATGCGTCGACAGGACTGTAACTTTCTTCAAAATGGAGCTACAGAGTCAAACTTTTTTTAAAATGTAGCAAATAACCCTGCAAAAGATGTTCTGAAACATTTTTACTCAAAAAACGGAAAACAACTTTTTTGGCGACAAAATTCACTTTTTGGAGAATTTCGGATTTTTGGATCTTTTGTTGTCAAAAATCTGACGATTATGAATGTGTAAAATTAATTTTGATCTTGATTTAAAAAATTATTCATCATCGTTTTCTATTTTTTCCAAATTTTTGAAAAAAAAATTTTTAAAAACCCGAAATTTTCCAAAAAGTGAATTTTGTCGCCAAAAAAGTTGCTTTCCGTTTTCTGGGTTTCAGAATAGTTTTTTAAAGTTATTTGCTACATTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTT</canonical>
            <polymorphic>CTAATGCTTTTCAGATATACAGTACTGGCCAAAAAGAATGCGTCGACAGGACTGTAACTTTCTTCAAAATGGAGCTACAGAGTCAAACTTTTTTTAAAATGTAGCAAATAACCCTGCAAAAGATGTTCTGAAACATTTTTACTCAAAAAACGGAAAACAACTTTTTTGGCGACAAAATTCACTTTTTGGAGAATTTCGGATTTTTGGATCTTTTGTTGTCAAAAATCTGACGATTATGAATGTGTAAAATTAATTTTGATCTTGATTTAAAAAATTATTCATCATCGTTTTCTATTTTTTCCAAATTTTTGAAAAAAAAATTTTTAAAAACCCGAAATTTTCCAAAAAGTGAATTTTGTCGCCAAAAAAGTTGCTTTCCGTTTTCTGGGTTTCAGAATAGTTTTTTAAAGTTATTTGCTACATTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCKACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 455 43</canonical_bands>
                <polymorphic_bands>957 43</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>455 206 110 88 81 44 16</canonical_bands>
                <polymorphic_bands>661 110 88 81 44 16</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>501 455 44</canonical_bands>
                <polymorphic_bands>956 44</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>497 458 45</canonical_bands>
                <polymorphic_bands>955 45</polymorphic_bands>
            </assay>
            <assay>
                <site>GTCGAC</site>
                <isoschizomers>
                    <enzyme>SalI</enzyme>
                </isoschizomers>
                <canonical_bands>503 455 42</canonical_bands>
                <polymorphic_bands>958 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAGGCTAATGCTTTTCAGATA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTGAACGGTGTATTTTATTT</pcr_primer_p2>
		<pcr_amplicon_size>613</pcr_amplicon_size>
		<canonical_amplicon>CGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAAC</canonical_amplicon>
		<polymorphic_amplicon>CKACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38558</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>419112</contig_pos>
        <strand></strand>
        <context>cattcttttt[G/A]sccagtactg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTT</left_flank>
        <right_flank>GCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATACAGTACTGGCCAAAAAGAATGCGTCGACAGGACTGTAACTTTCTTCAAAATGGAGCTACAGAGTCAAACTTTTTTTAAAATGTAGCAAATAACCCTGCAAAAGATGTTCTGAAACATTTTTACTCAAAAAACGGAAAACAACTTTTTTGGCGACAAAATTCACTTTTTGGAGAATTTCGGATTTTTGGATCTTTTGTTGTCAAAAATCTGACGATTATGAATGTGTAAAATTAATTTTGATCTTGATTTAAAAAATTATTCATCATCGTTTTCTATTTTTTCCAAATTTTTGAAAAAAAAATTTTTAAAAACCCGAAATTTTCCAAAAAGTGAATTTTGTCGCCAAAAAAGTTGCTTTCCGTTTTCTGGGTTTCAGAATAGTTTTTTAAAGTTATTTGCTACATTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATT</canonical>
            <polymorphic>ATATACAGTACTGGCCAAAAAGAATGCGTCGACAGGACTGTAACTTTCTTCAAAATGGAGCTACAGAGTCAAACTTTTTTTAAAATGTAGCAAATAACCCTGCAAAAGATGTTCTGAAACATTTTTACTCAAAAAACGGAAAACAACTTTTTTGGCGACAAAATTCACTTTTTGGAGAATTTCGGATTTTTGGATCTTTTGTTGTCAAAAATCTGACGATTATGAATGTGTAAAATTAATTTTGATCTTGATTTAAAAAATTATTCATCATCGTTTTCTATTTTTTCCAAATTTTTGAAAAAAAAATTTTTAAAAACCCGAAATTTTCCAAAAAGTGAATTTTGTCGCCAAAAAAGTTGCTTTCCGTTTTCTGGGTTTCAGAATAGTTTTTTAAAGTTATTTGCTACATTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTRGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGGCCA</site>
                <isoschizomers>
                    <enzyme>BalI</enzyme>
                    <enzyme>MlsI</enzyme>
                    <enzyme>MluNI</enzyme>
                    <enzyme>MscI</enzyme>
                    <enzyme>Msp20I</enzyme>
                </isoschizomers>
                <canonical_bands>499 487 14</canonical_bands>
                <polymorphic_bands>986 14</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>499 487 14</canonical_bands>
                <polymorphic_bands>986 14</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 487 12</canonical_bands>
                <polymorphic_bands>988 12</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>374 143 119 99 67 55 46 44 27 14 12</canonical_bands>
                <polymorphic_bands>374 143 119 99 94 55 46 44 14 12</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>499 487 14</canonical_bands>
                <polymorphic_bands>986 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAGGCTAATGCTTTTCAGATA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTGAACGGTGTATTTTATTT</pcr_primer_p2>
		<pcr_amplicon_size>613</pcr_amplicon_size>
		<canonical_amplicon>TGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TRGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38559</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>419113</contig_pos>
        <strand></strand>
        <context>attctttttr[G/C]ccagtactgt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTG</left_flank>
        <right_flank>CCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATACAGTACTGGCCAAAAAGAATGCGTCGACAGGACTGTAACTTTCTTCAAAATGGAGCTACAGAGTCAAACTTTTTTTAAAATGTAGCAAATAACCCTGCAAAAGATGTTCTGAAACATTTTTACTCAAAAAACGGAAAACAACTTTTTTGGCGACAAAATTCACTTTTTGGAGAATTTCGGATTTTTGGATCTTTTGTTGTCAAAAATCTGACGATTATGAATGTGTAAAATTAATTTTGATCTTGATTTAAAAAATTATTCATCATCGTTTTCTATTTTTTCCAAATTTTTGAAAAAAAAATTTTTAAAAACCCGAAATTTTCCAAAAAGTGAATTTTGTCGCCAAAAAAGTTGCTTTCCGTTTTCTGGGTTTCAGAATAGTTTTTTAAAGTTATTTGCTACATTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTC</canonical>
            <polymorphic>TATACAGTACTGGCCAAAAAGAATGCGTCGACAGGACTGTAACTTTCTTCAAAATGGAGCTACAGAGTCAAACTTTTTTTAAAATGTAGCAAATAACCCTGCAAAAGATGTTCTGAAACATTTTTACTCAAAAAACGGAAAACAACTTTTTTGGCGACAAAATTCACTTTTTGGAGAATTTCGGATTTTTGGATCTTTTGTTGTCAAAAATCTGACGATTATGAATGTGTAAAATTAATTTTGATCTTGATTTAAAAAATTATTCATCATCGTTTTCTATTTTTTCCAAATTTTTGAAAAAAAAATTTTTAAAAACCCGAAATTTTCCAAAAAGTGAATTTTGTCGCCAAAAAAGTTGCTTTCCGTTTTCTGGGTTTCAGAATAGTTTTTTAAAGTTATTTGCTACATTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGSCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGGCCA</site>
                <isoschizomers>
                    <enzyme>BalI</enzyme>
                    <enzyme>MlsI</enzyme>
                    <enzyme>MluNI</enzyme>
                    <enzyme>MscI</enzyme>
                    <enzyme>Msp20I</enzyme>
                </isoschizomers>
                <canonical_bands>500 487 13</canonical_bands>
                <polymorphic_bands>987 13</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 487 13</canonical_bands>
                <polymorphic_bands>987 13</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 487 11</canonical_bands>
                <polymorphic_bands>989 11</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>374 143 119 100 67 55 46 44 27 13 12</canonical_bands>
                <polymorphic_bands>374 143 119 100 94 55 46 44 13 12</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 487 13</canonical_bands>
                <polymorphic_bands>987 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAGGCTAATGCTTTTCAGATA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTGAACGGTGTATTTTATTT</pcr_primer_p2>
		<pcr_amplicon_size>613</pcr_amplicon_size>
		<canonical_amplicon>GGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAAC</canonical_amplicon>
		<polymorphic_amplicon>GSCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38560</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>419277</contig_pos>
        <strand>+</strand>
        <context>TCAATTGAMA[A/C]TTGGAGCTCW</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAA</left_flank>
        <right_flank>TTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACTTTTTGGAGAATTTCGGATTTTTGGATCTTTTGTTGTCAAAAATCTGACGATTATGAATGTGTAAAATTAATTTTGATCTTGATTTAAAAAATTATTCATCATCGTTTTCTATTTTTTCCAAATTTTTGAAAAAAAAATTTTTAAAAACCCGAAATTTTCCAAAAAGTGAATTTTGTCGCCAAAAAAGTTGCTTTCCGTTTTCTGGGTTTCAGAATAGTTTTTTAAAGTTATTTGCTACATTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTCATTTAACCAAAATGCGATTCGTGTTCAGTTTAGTTAATTAGCTGGTGTTTCTTCTCAACGTTTTAGCAAATTAGAAAAAATATATACGAAGAGATAATCAGGAACCAGATTGAA</canonical>
            <polymorphic>CACTTTTTGGAGAATTTCGGATTTTTGGATCTTTTGTTGTCAAAAATCTGACGATTATGAATGTGTAAAATTAATTTTGATCTTGATTTAAAAAATTATTCATCATCGTTTTCTATTTTTTCCAAATTTTTGAAAAAAAAATTTTTAAAAACCCGAAATTTTCCAAAAAGTGAATTTTGTCGCCAAAAAAGTTGCTTTCCGTTTTCTGGGTTTCAGAATAGTTTTTTAAAGTTATTTGCTACATTTTACAAAAAAGTTGGACACTTTAGCTCTATTTTGAAGAAAGTTACAGTTAGAAAACCTGTTCAGTCGGCAGTGTCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAMTTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTCATTTAACCAAAATGCGATTCGTGTTCAGTTTAGTTAATTAGCTGGTGTTTCTTCTCAACGTTTTAGCAAATTAGAAAAAATATATACGAAGAGATAATCAGGAACCAGATTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>195 177 85 69 67 61 56 46 33 31 28 21 20 17 16 15 15 15 12 10 7 4</canonical_bands>
                <polymorphic_bands>195 177 92 69 67 61 56 46 33 31 28 21 20 17 16 15 15 15 12 10 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATACACCGTTCAAAACCAT</pcr_primer_p1>
		<pcr_primer_p2>AGTGCTAAATTTTGTATGCTGTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACT</canonical_amplicon>
		<polymorphic_amplicon>AAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAMTTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38561</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>419595</contig_pos>
        <strand>+</strand>
        <context>AACGCAGGCA[A/G]GTTCAGTTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCA</left_flank>
        <right_flank>GTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAA</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTCATTTAACCAAAATGCGATTCGTGTTCAGTTTAGTTAATTAGCTGGTGTTTCTTCTCAACGTTTTAGCAAATTAGAAAAAATATATACGAAGAGATAATCAGGAACCAGATTGAACATGATAAACAAAACAACCCCCATGAACATCATACTAACCAGTGAGAACTCGGTTTTGTTGAAGACGTCGATTTCGCGGTAAACTGTATCCGTGTTCGTGGTTCGCTCCTTAATCTCGCCAAACTGCAAAACAAGAAGAGTTTAAATTAATCCTCCTGGATATTTCCGCGCATATATTCAGTGACCCGGATTGATTTGATACATTGTAATATTAGCAATTGTATTAAGGGGAACACATGTTCGGTTTTTTGAGCTTCCCCCGAAGATGAGTGTTCTCATATAAATTATGCGGACATGTGGCACAAAGAAAATCCTTTT</canonical>
            <polymorphic>TCGACGCATTCTTTTTGGCCAGTACTGTACTAAACAAAAGCAGAGCTTCAATTTTGTAGTTGGCAATTTTTCTGTACAAAGTTATTCAAATAAAATACACCGTTCAAAACCATCCAAGCGCCAAAAATTATTTTGTCGTTTTCATCTATATGAAATTGTACAGATAAGTTGTCAATTGAAAATTGGAGCTCTTATTTCTTGAATCTTCGATAAAATCTACCATATTCCCAAGCTCCAAAGGCGGCTTATTTTTAACAAAAACAAGAATTTAAATGATTAGTTTCAGATCGATACAGTAGCTTGAAGTTGATTTCCCAAAAGACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCARGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTCATTTAACCAAAATGCGATTCGTGTTCAGTTTAGTTAATTAGCTGGTGTTTCTTCTCAACGTTTTAGCAAATTAGAAAAAATATATACGAAGAGATAATCAGGAACCAGATTGAACATGATAAACAAAACAACCCCCATGAACATCATACTAACCAGTGAGAACTCGGTTTTGTTGAAGACGTCGATTTCGCGGTAAACTGTATCCGTGTTCGTGGTTCGCTCCTTAATCTCGCCAAACTGCAAAACAAGAAGAGTTTAAATTAATCCTCCTGGATATTTCCGCGCATATATTCAGTGACCCGGATTGATTTGATACATTGTAATATTAGCAATTGTATTAAGGGGAACACATGTTCGGTTTTTTGAGCTTCCCCCGAAGATGAGTGTTCTCATATAAATTATGCGGACATGTGGCACAAAGAAAATCCTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGCATACAAAATTTAGCACTT</pcr_primer_p1>
		<pcr_primer_p2>GAGAGAAAACATGTTCCATTTTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCAGGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTC</canonical_amplicon>
		<polymorphic_amplicon>ACAGCATACAAAATTTAGCACTTTTTAATTTTACTGAATTTCATTTCATTTATGTCGAACTTTTTGTTCCAAGTACCGTCATCTTAACTATACAAAGCCTTCCATACTCCTTATCCCTTACCTTCACGGTCCGATGAAATCGCTTGATACGCTGATTGCCCGAATCGAAACGCAGGCARGTTCAGTTCGGTGTATTCAGGGCTGTTGCATCCCAATTTGCACTGTAAAATGGAACATGTTTTCTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38562</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>448609</contig_pos>
        <strand>+</strand>
        <context>TGAGAGAAGA[A/G]GGGAGAATCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCTCTGCGCACGATAATGCTTGGGTTAGTTAGGTAGTTTGAGAGAAGA</left_flank>
        <right_flank>GGGAGAATCGGAATCGGAGGCGGCGCCATCGTCGCCCATAACATATATCC</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTCAGGGAAATTTCTAGTCTTTATTTGAAGCTTTTGGGAAAATCATAATCTCTATAACGTAATCAGTCCTAATCCTCCCCATAAATAGCTTTAATTATTGAAAAAACTGCTTTCATTAGCATCTGAAAACCGCAAACCTGACTTCCTCTAAATTGAGCCTATTCATAGCAACAGCCGTGAAAAAAACACCACATCAGGACCAACAACAGAGAATAGAAGGATGGATAATGAAGCATCCATTGTTGTGTTCAGGCTGTCCGATTTAAGGGCTACGTCCGCTAATCTATCGCCTTACAATAACCATTGCGGCCGGGGGCGCGCACGCTCGCACGACGGCCCGACGACGGGACTAATGTAATGTTTCCAGGTGACCCGTCGCCCGCCCATCCGCCAATTTTCAGGCTCCGCCCCTCCCTTCTTCCTCTTTTTCTCTCACTGTTACCCGTCAATCTCTGCGCACGATAATGCTTGGGTTAGTTAGGTAGTTTGAGAGAAGAAGGGAGAATCGGAATCGGAGGCGGCGCCATCGTCGCCCATAACATATATCCGAAATTGCGGAGAACAATGAAATTTCGTGTGTGACGCTGGTGGGAAGAGGCCTTCTAGGCCATCTGAAGGCCGTTTCAGAGAGAGAGAGCGATATTTCGGAAGAACACAATTGCCTCCTGTAGATTACTGTACTTACCCTATTTGCGTGGTAATTATACAACCAGGTATCGAATTCAGGCTTGAGAAGACGGAGAAAGAAGGACGTTGGAGAAAAAAAATCCTCTCAAAGATACATAAAAAGTGACACGTTGAAAAAGGAGGAGATGAGATAATTCTAGTATGAGGGTGGACAAAGAAGGAAAATGAGAAAAAGAAGTATGTGACTACTTCATTATCCAACTACTACTACTTTTGCATCCTTCAATTTTCACAACTAACGGGAATAAATGGAGAAGAAATGAGGAATTGCTAAAATTGGTTTGGCAGAAGAGGGAGAAGAATAGGCATAT</canonical>
            <polymorphic>CTCTCAGGGAAATTTCTAGTCTTTATTTGAAGCTTTTGGGAAAATCATAATCTCTATAACGTAATCAGTCCTAATCCTCCCCATAAATAGCTTTAATTATTGAAAAAACTGCTTTCATTAGCATCTGAAAACCGCAAACCTGACTTCCTCTAAATTGAGCCTATTCATAGCAACAGCCGTGAAAAAAACACCACATCAGGACCAACAACAGAGAATAGAAGGATGGATAATGAAGCATCCATTGTTGTGTTCAGGCTGTCCGATTTAAGGGCTACGTCCGCTAATCTATCGCCTTACAATAACCATTGCGGCCGGGGGCGCGCACGCTCGCACGACGGCCCGACGACGGGACTAATGTAATGTTTCCAGGTGACCCGTCGCCCGCCCATCCGCCAATTTTCAGGCTCCGCCCCTCCCTTCTTCCTCTTTTTCTCTCACTGTTACCCGTCAATCTCTGCGCACGATAATGCTTGGGTTAGTTAGGTAGTTTGAGAGAAGARGGGAGAATCGGAATCGGAGGCGGCGCCATCGTCGCCCATAACATATATCCGAAATTGCGGAGAACAATGAAATTTCGTGTGTGACGCTGGTGGGAAGAGGCCTTCTAGGCCATCTGAAGGCCGTTTCAGAGAGAGAGAGCGATATTTCGGAAGAACACAATTGCCTCCTGTAGATTACTGTACTTACCCTATTTGCGTGGTAATTATACAACCAGGTATCGAATTCAGGCTTGAGAAGACGGAGAAAGAAGGACGTTGGAGAAAAAAAATCCTCTCAAAGATACATAAAAAGTGACACGTTGAAAAAGGAGGAGATGAGATAATTCTAGTATGAGGGTGGACAAAGAAGGAAAATGAGAAAAAGAAGTATGTGACTACTTCATTATCCAACTACTACTACTTTTGCATCCTTCAATTTTCACAACTAACGGGAATAAATGGAGAAGAAATGAGGAATTGCTAAAATTGGTTTGGCAGAAGAGGGAGAAGAATAGGCATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTTCCTCTTTTTCTCTCACT</pcr_primer_p1>
		<pcr_primer_p2>CAATTGTGTTCTTCCGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTTCTTCCTCTTTTTCTCTCACTGTTACCCGTCAATCTCTGCGCACGATAATGCTTGGGTTAGTTAGGTAGTTTGAGAGAAGAAGGGAGAATCGGAATCGGAGGCGGCGCCATCGTCGCCCATAACATATATCCGAAATTGCGGAGAACAATGAAATTTCGTGTGTGACGCTGGTGGGAAGAGGCCTTCTAGGCCATCTGAAGGCCGTTTCAGAGAGAGAGAGCGATATTTCGGAAGAACACAATTG</canonical_amplicon>
		<polymorphic_amplicon>CTTCTTCCTCTTTTTCTCTCACTGTTACCCGTCAATCTCTGCGCACGATAATGCTTGGGTTAGTTAGGTAGTTTGAGAGAAGARGGGAGAATCGGAATCGGAGGCGGCGCCATCGTCGCCCATAACATATATCCGAAATTGCGGAGAACAATGAAATTTCGTGTGTGACGCTGGTGGGAAGAGGCCTTCTAGGCCATCTGAAGGCCGTTTCAGAGAGAGAGAGCGATATTTCGGAAGAACACAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38563</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>449304</contig_pos>
        <strand>+</strand>
        <context>AAACTATTTT[G/T]CAGTAATTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAATAATTATATCCTACTGTATATAAATTTTGAACTATCAAACTATTTT</left_flank>
        <right_flank>CAGTAATTGTAGTATTTTTCAGAATTATTCAGCGGAATTTTTTCCTACAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTGGTAATTATACAACCAGGTATCGAATTCAGGCTTGAGAAGACGGAGAAAGAAGGACGTTGGAGAAAAAAAATCCTCTCAAAGATACATAAAAAGTGACACGTTGAAAAAGGAGGAGATGAGATAATTCTAGTATGAGGGTGGACAAAGAAGGAAAATGAGAAAAAGAAGTATGTGACTACTTCATTATCCAACTACTACTACTTTTGCATCCTTCAATTTTCACAACTAACGGGAATAAATGGAGAAGAAATGAGGAATTGCTAAAATTGGTTTGGCAGAAGAGGGAGAAGAATAGGCATATAATTTTGACGGATTACTACAATGATGGATTGGAAATAGTGTAAATTTTTAGGACTCTGACTTCTTTCTGACTACAATTCTGACATTATAATAATTTTCATAAGTTGTAGTTTGCAGATTTAGATTTTAGATTGAATTCTAGCAAAAAATAATTATATCCTACTGTATATAAATTTTGAACTATCAAACTATTTTTCAGTAATTGTAGTATTTTTCAGAATTATTCAGCGGAATTTTTTCCTACAGTAACCCAGTTTTGTCGGTGTCCCAGGCAATTCTAGAAGACCGGTAGCACCAATTAAGGCATTTGCGCAACACTCTCACCTCATCAACGTTCTCCTTTCTCAAAAATTCGCGCTAATTCCAGTGCAGATGGTACCATCACTCGCGCACATCTTGGAGAGGCATTGCATCATCCGACGCGTGGCATCATCCTCAATTCCTACGTAAGACGACCTACTGTAGATACTGTACACTAGTAAGCCGGATGAAGCCCCCTCCGAGGATAAGCAATTAATACTAATGATGATGTTGGCTAATGGGATTTTGATATGATTTCCCTGCTACATCTACCCGCTGTTTCTTCTTTTTCTTTATTTTCTCCGATTTGATTTCCTCGTTTACGGTAGATATTTATTACCCTCGCTAGCAATAAATGATAATTTTTTCTTGAATGATTTGGTGGAAGAAACATCT</canonical>
            <polymorphic>CGTGGTAATTATACAACCAGGTATCGAATTCAGGCTTGAGAAGACGGAGAAAGAAGGACGTTGGAGAAAAAAAATCCTCTCAAAGATACATAAAAAGTGACACGTTGAAAAAGGAGGAGATGAGATAATTCTAGTATGAGGGTGGACAAAGAAGGAAAATGAGAAAAAGAAGTATGTGACTACTTCATTATCCAACTACTACTACTTTTGCATCCTTCAATTTTCACAACTAACGGGAATAAATGGAGAAGAAATGAGGAATTGCTAAAATTGGTTTGGCAGAAGAGGGAGAAGAATAGGCATATAATTTTGACGGATTACTACAATGATGGATTGGAAATAGTGTAAATTTTTAGGACTCTGACTTCTTTCTGACTACAATTCTGACATTATAATAATTTTCATAAGTTGTAGTTTGCAGATTTAGATTTTAGATTGAATTCTAGCAAAAAATAATTATATCCTACTGTATATAAATTTTGAACTATCAAACTATTTTKCAGTAATTGTAGTATTTTTCAGAATTATTCAGCGGAATTTTTTCCTACAGTAACCCAGTTTTGTCGGTGTCCCAGGCAATTCTAGAAGACCGGTAGCACCAATTAAGGCATTTGCGCAACACTCTCACCTCATCAACGTTCTCCTTTCTCAAAAATTCGCGCTAATTCCAGTGCAGATGGTACCATCACTCGCGCACATCTTGGAGAGGCATTGCATCATCCGACGCGTGGCATCATCCTCAATTCCTACGTAAGACGACCTACTGTAGATACTGTACACTAGTAAGCCGGATGAAGCCCCCTCCGAGGATAAGCAATTAATACTAATGATGATGTTGGCTAATGGGATTTTGATATGATTTCCCTGCTACATCTACCCGCTGTTTCTTCTTTTTCTTTATTTTCTCCGATTTGATTTCCTCGTTTACGGTAGATATTTATTACCCTCGCTAGCAATAAATGATAATTTTTTCTTGAATGATTTGGTGGAAGAAACATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTACAATGATGGATTGGAAAT</pcr_primer_p1>
		<pcr_primer_p2>GACAAAACTGGGTTACTGTAGG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TACTACAATGATGGATTGGAAATAGTGTAAATTTTTAGGACTCTGACTTCTTTCTGACTACAATTCTGACATTATAATAATTTTCATAAGTTGTAGTTTGCAGATTTAGATTTTAGATTGAATTCTAGCAAAAAATAATTATATCCTACTGTATATAAATTTTGAACTATCAAACTATTTTTCAGTAATTGTAGTATTTTTCAGAATTATTCAGCGGAATTTTTTCCTACAGTAACCCAGTTTTGTC</canonical_amplicon>
		<polymorphic_amplicon>TACTACAATGATGGATTGGAAATAGTGTAAATTTTTAGGACTCTGACTTCTTTCTGACTACAATTCTGACATTATAATAATTTTCATAAGTTGTAGTTTGCAGATTTAGATTTTAGATTGAATTCTAGCAAAAAATAATTATATCCTACTGTATATAAATTTTGAACTATCAAACTATTTTKCAGTAATTGTAGTATTTTTCAGAATTATTCAGCGGAATTTTTTCCTACAGTAACCCAGTTTTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38564</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>466682</contig_pos>
        <strand>+</strand>
        <context>GAAGGAGAAA[A/C]AAAAAAGATA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTATGCTTTTGTTCTCATTTTTGACTTTTAAAAAGTTTCGAAGGAGAAA</left_flank>
        <right_flank>AAAAAAGATAAGCCCAATGCGGGGCTCGAACCCGCGACAACCAGATTAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGTGGACCAGCCGGAAACCCAGGATCTGACGGACCAGCTGGACCAATTGGACCACAAGGAGGATCCAACGTCGTTCCATCGCCAGCCGGAGAGCCAGGATCACCAGGAGCCCCAGGACCACAAGGACCACCAGGAGCCGCCGGACGACCAGGACGTGACGGACAGCCAGGAGCACCAGGAGAGCAAGGAGAGAACGGTCCAGACGGAGCCCCAGGAAAGCCAGGATCCGACGGACAGCCAGGAGCTCCAGGAAACGAGGGAGCCCGCGGAGGTTGCGACCACTGCCCACCACCAAGAACTGCTCCAGGATATTAACCATGAGAAACTTGTTCAATACAGACATACATTTTCTTTTTTAAAAATTCAAAACAAATATATCATTGAAAGATTTGGTCAAAACAGAAACTGCCCCCGTGAAATAAAGAGTTCTTTACAGCAAAATTGTGTTTTTATGCTTTTGTTCTCATTTTTGACTTTTAAAAAGTTTCGAAGGAGAAACAAAAAAGATAAGCCCAATGCGGGGCTCGAACCCGCGACAACCAGATTAAGAGTCTGGTGCTCTACCGACTGAGCTAACCGGGCGGCGATACCAATAGAAGTAGACGCAAACTAAATACCAACCAGACGGCTGGAGTGTCTCGACACAAGAGAGGAAAAAAGCGGAGTATGTTATCTCTTCTCTCTCTCTCTCAAAAATTCTCTTTTCTCTCTGCCTGCCAACGAGTGTAGTAGTGTGTAACAGACAAATATTTTTTCTTTTACATTGAAATATAAAAATGTTGGGAACAAAATTTAAATGTAACTACTCATCATCGTCGTCATAGGTTTTTCTTCTGTCGATCAGGAAAATTTGGAATCCCACTAGCCCACAAGAGAAGGCTAGTAGACCTCCTCCAACAATCAGATACATAACTTCCAAAAATTTCTGCTCGGTTCCGAACCATGTTGGGTGGAGAATCCAGAAATATTTCTCCATTTTATGTTCGGTTCGGGGTATGA</canonical>
            <polymorphic>ACGTGGACCAGCCGGAAACCCAGGATCTGACGGACCAGCTGGACCAATTGGACCACAAGGAGGATCCAACGTCGTTCCATCGCCAGCCGGAGAGCCAGGATCACCAGGAGCCCCAGGACCACAAGGACCACCAGGAGCCGCCGGACGACCAGGACGTGACGGACAGCCAGGAGCACCAGGAGAGCAAGGAGAGAACGGTCCAGACGGAGCCCCAGGAAAGCCAGGATCCGACGGACAGCCAGGAGCTCCAGGAAACGAGGGAGCCCGCGGAGGTTGCGACCACTGCCCACCACCAAGAACTGCTCCAGGATATTAACCATGAGAAACTTGTTCAATACAGACATACATTTTCTTTTTTAAAAATTCAAAACAAATATATCATTGAAAGATTTGGTCAAAACAGAAACTGCCCCCGTGAAATAAAGAGTTCTTTACAGCAAAATTGTGTTTTTATGCTTTTGTTCTCATTTTTGACTTTTAAAAAGTTTCGAAGGAGAAAMAAAAAAGATAAGCCCAATGCGGGGCTCGAACCCGCGACAACCAGATTAAGAGTCTGGTGCTCTACCGACTGAGCTAACCGGGCGGCGATACCAATAGAAGTAGACGCAAACTAAATACCAACCAGACGGCTGGAGTGTCTCGACACAAGAGAGGAAAAAAGCGGAGTATGTTATCTCTTCTCTCTCTCTCTCAAAAATTCTCTTTTCTCTCTGCCTGCCAACGAGTGTAGTAGTGTGTAACAGACAAATATTTTTTCTTTTACATTGAAATATAAAAATGTTGGGAACAAAATTTAAATGTAACTACTCATCATCGTCGTCATAGGTTTTTCTTCTGTCGATCAGGAAAATTTGGAATCCCACTAGCCCACAAGAGAAGGCTAGTAGACCTCCTCCAACAATCAGATACATAACTTCCAAAAATTTCTGCTCGGTTCCGAACCATGTTGGGTGGAGAATCCAGAAATATTTCTCCATTTTATGTTCGGTTCGGGGTATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACAGCAAAATTGTGTTTTTATG</pcr_primer_p1>
		<pcr_primer_p2>AAGAGATAACATACTCCGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TACAGCAAAATTGTGTTTTTATGCTTTTGTTCTCATTTTTGACTTTTAAAAAGTTTCGAAGGAGAAACAAAAAAGATAAGCCCAATGCGGGGCTCGAACCCGCGACAACCAGATTAAGAGTCTGGTGCTCTACCGACTGAGCTAACCGGGCGGCGATACCAATAGAAGTAGACGCAAACTAAATACCAACCAGACGGCTGGAGTGTCTCGACACAAGAGAGGAAAAAAGCGGAGTATGTTATCTCTT</canonical_amplicon>
		<polymorphic_amplicon>TACAGCAAAATTGTGTTTTTATGCTTTTGTTCTCATTTTTGACTTTTAAAAAGTTTCGAAGGAGAAAMAAAAAAGATAAGCCCAATGCGGGGCTCGAACCCGCGACAACCAGATTAAGAGTCTGGTGCTCTACCGACTGAGCTAACCGGGCGGCGATACCAATAGAAGTAGACGCAAACTAAATACCAACCAGACGGCTGGAGTGTCTCGACACAAGAGAGGAAAAAAGCGGAGTATGTTATCTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38565</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>509764</contig_pos>
        <strand>+</strand>
        <context>ACTTACCGAA[A/G]CSCATCCCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAA</left_flank>
        <right_flank>CGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCT</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTCCAAAAAAATATACGAGCTCAATGTGAACGGTTTGCGTGGGCTTTTATGAGTGGAAATACGGTAGGTGAGTTAAACATGTAAGCCAAGAGGTACAGCATAGAAACGATGAGCATCATTTCATTTGTCCCATCAGTGTTCTTTTTTCAGATTCTATTCTGATGTTCAAATAGTCATCTAACCAAAAGTTTTGTCGCTCCGTTACGACCATTTGCAGTTTCTGAAACATTTATTCGAAAACCTGGTATCATTAACTGTCATTATTATTTTGAGCGGATAATTTTTCAAAAAACTCAAACAACTTTATGGAATAGATAACGTAACATTTTCTACAAAAATCGTTTCTTTGGTTACACTCATCATAAGACTACTGCCAACCTCCATCCTGTCTGCATTTCCGTTTTTTTTCACATTTCTTTACAGTCTCCATCCATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAAT</canonical>
            <polymorphic>ACTTCCAAAAAAATATACGAGCTCAATGTGAACGGTTTGCGTGGGCTTTTATGAGTGGAAATACGGTAGGTGAGTTAAACATGTAAGCCAAGAGGTACAGCATAGAAACGATGAGCATCATTTCATTTGTCCCATCAGTGTTCTTTTTTCAGATTCTATTCTGATGTTCAAATAGTCATCTAACCAAAAGTTTTGTCGCTCCGTTACGACCATTTGCAGTTTCTGAAACATTTATTCGAAAACCTGGTATCATTAACTGTCATTATTATTTTGAGCGGATAATTTTTCAAAAAACTCAAACAACTTTATGGAATAGATAACGTAACATTTTCTACAAAAATCGTTTCTTTGGTTACACTCATCATAAGACTACTGCCAACCTCCATCCTGTCTGCATTTCCGTTTTTTTTCACATTTCTTTACAGTCTCCATCCATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAARCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAGATCACGTTACCAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>ACCGGTTGAAACATAAATACATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGT</canonical_amplicon>
		<polymorphic_amplicon>ATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAARCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38566</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>509766</contig_pos>
        <strand>+</strand>
        <context>TTACCGAARC[C/G]CATCCCATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGC</left_flank>
        <right_flank>CATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCAAAAAAATATACGAGCTCAATGTGAACGGTTTGCGTGGGCTTTTATGAGTGGAAATACGGTAGGTGAGTTAAACATGTAAGCCAAGAGGTACAGCATAGAAACGATGAGCATCATTTCATTTGTCCCATCAGTGTTCTTTTTTCAGATTCTATTCTGATGTTCAAATAGTCATCTAACCAAAAGTTTTGTCGCTCCGTTACGACCATTTGCAGTTTCTGAAACATTTATTCGAAAACCTGGTATCATTAACTGTCATTATTATTTTGAGCGGATAATTTTTCAAAAAACTCAAACAACTTTATGGAATAGATAACGTAACATTTTCTACAAAAATCGTTTCTTTGGTTACACTCATCATAAGACTACTGCCAACCTCCATCCTGTCTGCATTTCCGTTTTTTTTCACATTTCTTTACAGTCTCCATCCATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAATTA</canonical>
            <polymorphic>TTCCAAAAAAATATACGAGCTCAATGTGAACGGTTTGCGTGGGCTTTTATGAGTGGAAATACGGTAGGTGAGTTAAACATGTAAGCCAAGAGGTACAGCATAGAAACGATGAGCATCATTTCATTTGTCCCATCAGTGTTCTTTTTTCAGATTCTATTCTGATGTTCAAATAGTCATCTAACCAAAAGTTTTGTCGCTCCGTTACGACCATTTGCAGTTTCTGAAACATTTATTCGAAAACCTGGTATCATTAACTGTCATTATTATTTTGAGCGGATAATTTTTCAAAAAACTCAAACAACTTTATGGAATAGATAACGTAACATTTTCTACAAAAATCGTTTCTTTGGTTACACTCATCATAAGACTACTGCCAACCTCCATCCTGTCTGCATTTCCGTTTTTTTTCACATTTCTTTACAGTCTCCATCCATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCSCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAGATCACGTTACCAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>ACCGGTTGAAACATAAATACATA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGT</canonical_amplicon>
		<polymorphic_amplicon>ATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCSCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38567</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>509828</contig_pos>
        <strand>+</strand>
        <context>AATCGAATTC[A/T]TTTTTTTCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTC</left_flank>
        <right_flank>TTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTAGGTGAGTTAAACATGTAAGCCAAGAGGTACAGCATAGAAACGATGAGCATCATTTCATTTGTCCCATCAGTGTTCTTTTTTCAGATTCTATTCTGATGTTCAAATAGTCATCTAACCAAAAGTTTTGTCGCTCCGTTACGACCATTTGCAGTTTCTGAAACATTTATTCGAAAACCTGGTATCATTAACTGTCATTATTATTTTGAGCGGATAATTTTTCAAAAAACTCAAACAACTTTATGGAATAGATAACGTAACATTTTCTACAAAAATCGTTTCTTTGGTTACACTCATCATAAGACTACTGCCAACCTCCATCCTGTCTGCATTTCCGTTTTTTTTCACATTTCTTTACAGTCTCCATCCATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAATTAGGAGCGGTTGTGAAAATGTGGAAATTGGCGCAACCAACTATAAGACGGGTTTTTATTGTTGT</canonical>
            <polymorphic>GGTAGGTGAGTTAAACATGTAAGCCAAGAGGTACAGCATAGAAACGATGAGCATCATTTCATTTGTCCCATCAGTGTTCTTTTTTCAGATTCTATTCTGATGTTCAAATAGTCATCTAACCAAAAGTTTTGTCGCTCCGTTACGACCATTTGCAGTTTCTGAAACATTTATTCGAAAACCTGGTATCATTAACTGTCATTATTATTTTGAGCGGATAATTTTTCAAAAAACTCAAACAACTTTATGGAATAGATAACGTAACATTTTCTACAAAAATCGTTTCTTTGGTTACACTCATCATAAGACTACTGCCAACCTCCATCCTGTCTGCATTTCCGTTTTTTTTCACATTTCTTTACAGTCTCCATCCATCAGATCACGTTACCAAGTTTTCATCAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCWTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAGATAACAGATTTATGTAAGGCTTGATTTCTTTATGGCGAAATGTGGAATTCGTCGGAATTTCAGAAAACTAATTTTGCACTTTAATGTGCTCTGATTAAGTTATCAATGTATTAACAATTGATTTATAGCTCAAGAGTGTTTTTTTTTCGAAAACCGTACAATAAATACTAGAAGCTGCAAATGCTTTTGCTCTTCCATCAAAAAAGGAGGCTTCAGAAAATTCGAAAAATAGGAAGACCACTATTTCGACTCGAATTTTGCCCCATCATCAATTTTATGTATAGTAAATTAGGAGCGGTTGTGAAAATGTGGAAATTGGCGCAACCAACTATAAGACGGGTTTTTATTGTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTTTATTCTTACGAAACCAG</pcr_primer_p1>
		<pcr_primer_p2>CTGACTATAAATCGGAAGACTTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCTTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTTTATTCTTACGAAACCAGAAATGAACTTACCGAAGCGCATCCCATTTTCCTTGCCGCTCATCTCATCCTTCTTCTTATCTTTCCTATGAATCGAATTCWTTTTTTTCTTGAAATGATGTGTCACCATTGCTTGAATTTAAATCTAGTTCTCATGAGAATCGAATCCTCTCTCTCCCGCCATAAGTATGTATATATGTATTTATGTTTCAACCGGTTTTTTGTTCAAGTCTTCCGATTTATAGTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38568</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>549701</contig_pos>
        <strand>+</strand>
        <context>ACAGCAAAAM[A/C]TCTACTTATC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAA</left_flank>
        <right_flank>TCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTGTCATCTTTTCTCACTCTAGTATCGTAGTCTCTTCTAAAAATTATGGCTTAATTTTAATTTATTTCCTAGAGATTGAGTCACCCATATACAAAGTCAACATTTAGAGTCAGTGCTAGTCGCCCTCCAACCCACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATTATAAAAACGGAAAAATTACAAAAATAAAAAGTTCAAAAAACAGTTTTTTCCTTCAAGAAAAAGAAATTTAATTACTTTTATTTCCTGAAGCTTTTTTGACGAGAAAGTTGC</canonical>
            <polymorphic>TTTTTGTCATCTTTTCTCACTCTAGTATCGTAGTCTCTTCTAAAAATTATGGCTTAATTTTAATTTATTTCCTAGAGATTGAGTCACCCATATACAAAGTCAACATTTAGAGTCAGTGCTAGTCGCCCTCCAACCCACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAAMTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATTATAAAAACGGAAAAATTACAAAAATAAAAAGTTCAAAAAACAGTTTTTTCCTTCAAGAAAAAGAAATTTAATTACTTTTATTTCCTGAAGCTTTTTTGACGAGAAAGTTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>423 309 188 47 33</canonical_bands>
                <polymorphic_bands>423 309 221 47</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>248 149 101 87 84 59 51 44 42 42 38 33 11 6 5</canonical_bands>
                <polymorphic_bands>248 149 134 87 84 59 51 44 42 42 38 11 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGACAAACCTGAAAAGTAA</pcr_primer_p1>
		<pcr_primer_p2>TATTTCGCAATTGTAGCGTAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATA</canonical_amplicon>
		<polymorphic_amplicon>CGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAAMTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38569</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>549729</contig_pos>
        <strand>+</strand>
        <context>GGGAAGATAK[G/T]AAAATTTAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAG</left_flank>
        <right_flank>AAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTAGTCTCTTCTAAAAATTATGGCTTAATTTTAATTTATTTCCTAGAGATTGAGTCACCCATATACAAAGTCAACATTTAGAGTCAGTGCTAGTCGCCCTCCAACCCACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATTATAAAAACGGAAAAATTACAAAAATAAAAAGTTCAAAAAACAGTTTTTTCCTTCAAGAAAAAGAAATTTAATTACTTTTATTTCCTGAAGCTTTTTTGACGAGAAAGTTGCCAACAACTTTGGTTTCCGGTGCCCAGTC</canonical>
            <polymorphic>CGTAGTCTCTTCTAAAAATTATGGCTTAATTTTAATTTATTTCCTAGAGATTGAGTCACCCATATACAAAGTCAACATTTAGAGTCAGTGCTAGTCGCCCTCCAACCCACACATCTGAATGGTTATCTGATATTTCTTCCCACAAGTTCAACATCAGCAACTGACATTAAAATGGCTCTACTCCGAAACTTGATACCAGAGTTTTGGAGTTGACTCGTTGAAGCATATATCAACATCAAGATCGCCACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGKAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATTATAAAAACGGAAAAATTACAAAAATAAAAAGTTCAAAAAACAGTTTTTTCCTTCAAGAAAAAGAAATTTAATTACTTTTATTTCCTGAAGCTTTTTTGACGAGAAAGTTGCCAACAACTTTGGTTTCCGGTGCCCAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAACAACACACAGCAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCTAGACATTGATGTTTTTAAATG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGG</canonical_amplicon>
		<polymorphic_amplicon>TGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGKAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38570</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>549975</contig_pos>
        <strand>+</strand>
        <context>TTGAGATGAA[A/G]TATTGACATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAA</left_flank>
        <right_flank>TATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATTATAAAAACGGAAAAATTACAAAAATAAAAAGTTCAAAAAACAGTTTTTTCCTTCAAGAAAAAGAAATTTAATTACTTTTATTTCCTGAAGCTTTTTTGACGAGAAAGTTGCCAACAACTTTGGTTTCCGGTGCCCAGTCAGAAAGTCACTTTTACAATTTACTAGGGGCTCCGTTTGTTCTTCGTGTCCGTTATAGTTATTTTCGTTTTGTTTTTCTGAAATTACGTATCTATAAATTACATATTCGTCTTCTTCTCCACCAGCCACACAATTTTTTCGTCTTCTTCTCCACCAGCCACACATTTCGTCTTCTTCTCCACCAGCCACACATGGTCTACGGGTGCAATATCCAATCCGGACCCCGTCGTTGTCTCCTCTCGACTCA</canonical>
            <polymorphic>ACCCTGAGTACCGTATCCATGAGATGCAGAATCCGAATTTTGTGCGAAACGACGGAAGATAGCTTCAGTTCTGCTCAACACTTCATACGTCGATTGGGTGCATCTTGAATAGTTTACTTAATAATTGAAAGAAAAGAACCAAAGGTAGTGATGCGAATCGGACAAACCTGAAAAGTAAGCTTACAGAAGCTGCTGAAAACGCGGTGAAACAACACACAGCAAAAATTCTACTTATCATATATAGGGAAGATAGGAAAATTTAATGAGGAATGAAGAAGAAACGACAAAAAAGGAAACGAATTGTTAATGTAGAACACAGTTATGAACTAATAAAACAATTTTCAGTTCAGAAAAACAAAACAGATTTTCTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAARTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATTATAAAAACGGAAAAATTACAAAAATAAAAAGTTCAAAAAACAGTTTTTTCCTTCAAGAAAAAGAAATTTAATTACTTTTATTTCCTGAAGCTTTTTTGACGAGAAAGTTGCCAACAACTTTGGTTTCCGGTGCCCAGTCAGAAAGTCACTTTTACAATTTACTAGGGGCTCCGTTTGTTCTTCGTGTCCGTTATAGTTATTTTCGTTTTGTTTTTCTGAAATTACGTATCTATAAATTACATATTCGTCTTCTTCTCCACCAGCCACACAATTTTTTCGTCTTCTTCTCCACCAGCCACACATTTCGTCTTCTTCTCCACCAGCCACACATGGTCTACGGGTGCAATATCCAATCCGGACCCCGTCGTTGTCTCCTCTCGACTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAACATTTCCAAAAACCTAC</pcr_primer_p1>
		<pcr_primer_p2>AATGAGAAAAGTGAAATGAAACA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAAGTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATT</canonical_amplicon>
		<polymorphic_amplicon>CTGAACATTTCCAAAAACCTACGCTACAATTGCGAAATAAAAATATGGCAGATATTATTGTCATTTAAAAACATCAATGTCTAGGAAGGGGGCATGACATAAATAGTGGGCAATTTTTTGGTTGAGATGAARTATTGACATTTCAAGCCAATGAATCGAGTTTTGGAGCATGGTTCATATGTGTTGCCCTGGGGATAAAAACTGACGGCGAATCGTTTGCAATATGTTTCATTTCACTTTTCTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38571</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>552476</contig_pos>
        <strand>+</strand>
        <context>ATTGTTTTTT[G/T]CGAATTTGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAGGAAGAGTTGGGTCACCCAAATCATATTCAAAACTAAATTGTTTTTT</left_flank>
        <right_flank>CGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAATAGACTTGGGTCTCAAGTGACCGGAGATTTCAGTGGGTCTTGCTCATTTCCGAAAGCTCGTCAAGTTTGATATTGATGTATTTTTAAAAAGGCAATTTTGAGTCTGTTATGAGACTTACCCGTCATCTTGCATCACTATTCACCATCCACATTTGTTCTAATAGATTTTCAATAAAAATCGTATTTTCCCCTCCTGTTAAACCAACGTGACTCATAAATACGCTAAAATTGCTTTCCCAGGTATCAAAATGAAACCCAAGTGCAACAGCATTCATCCAATGAAAGAAAACGAAAAGCCAAACATAGATGCCAAACTGGAAGAATTTTCCGATGACGATGATGATAGCCTTATGGACGTCACTCTTCCAATGAACAAGAAATGTTATGTTATCTATGTCATTGCCTTCATTTCGTTCGCCTGTTTCATCGTTGTTATCGTCGTGCTGAAGGAAGAGTTGGGTCACCCAAATCATATTCAAAACTAAATTGTTTTTTCCGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTTTTGAGATTTTTGAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGTAGGTCTTCAATTTTGTTCCGCTTATTTAGGTAGGAGCCTAGATAGGAGTCAAAAATTTCCTAATTCATGCTCTCCCTCGGTTTGACGTTCGTACAGCTGATGTAGGTTTGTACCATTCTGACTATACAATCAAGCTATATAATCTCGTGTACGATTCGGAAGACTGCATTCATATAGTAGTATTTTTCAGTGCTCTCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTTGTTTCCAGATAGGTAAAGGCAACCGTCGGCGAAATATGC</canonical>
            <polymorphic>GCAATAGACTTGGGTCTCAAGTGACCGGAGATTTCAGTGGGTCTTGCTCATTTCCGAAAGCTCGTCAAGTTTGATATTGATGTATTTTTAAAAAGGCAATTTTGAGTCTGTTATGAGACTTACCCGTCATCTTGCATCACTATTCACCATCCACATTTGTTCTAATAGATTTTCAATAAAAATCGTATTTTCCCCTCCTGTTAAACCAACGTGACTCATAAATACGCTAAAATTGCTTTCCCAGGTATCAAAATGAAACCCAAGTGCAACAGCATTCATCCAATGAAAGAAAACGAAAAGCCAAACATAGATGCCAAACTGGAAGAATTTTCCGATGACGATGATGATAGCCTTATGGACGTCACTCTTCCAATGAACAAGAAATGTTATGTTATCTATGTCATTGCCTTCATTTCGTTCGCCTGTTTCATCGTTGTTATCGTCGTGCTGAAGGAAGAGTTGGGTCACCCAAATCATATTCAAAACTAAATTGTTTTTTKCGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTTTTGAGATTTTTGAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGTAGGTCTTCAATTTTGTTCCGCTTATTTAGGTAGGAGCCTAGATAGGAGTCAAAAATTTCCTAATTCATGCTCTCCCTCGGTTTGACGTTCGTACAGCTGATGTAGGTTTGTACCATTCTGACTATACAATCAAGCTATATAATCTCGTGTACGATTCGGAAGACTGCATTCATATAGTAGTATTTTTCAGTGCTCTCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTTGTTTCCAGATAGGTAAAGGCAACCGTCGGCGAAATATGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>278 219 168 127 114 55 39</canonical_bands>
                <polymorphic_bands>282 278 219 127 55 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCTATGTCATTGCCTTCATTT</pcr_primer_p1>
		<pcr_primer_p2>AACCTAATGAACATTTCGTGTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATCTATGTCATTGCCTTCATTTCGTTCGCCTGTTTCATCGTTGTTATCGTCGTGCTGAAGGAAGAGTTGGGTCACCCAAATCATATTCAAAACTAAATTGTTTTTTCCGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTT</canonical_amplicon>
		<polymorphic_amplicon>TATCTATGTCATTGCCTTCATTTCGTTCGCCTGTTTCATCGTTGTTATCGTCGTGCTGAAGGAAGAGTTGGGTCACCCAAATCATATTCAAAACTAAATTGTTTTTTKCGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38572</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>552515</contig_pos>
        <strand>+</strand>
        <context>AATAAAGTTK[G/T]TAAGCAATAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTGTTTTTTCCGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTT</left_flank>
        <right_flank>TAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTCTTGCTCATTTCCGAAAGCTCGTCAAGTTTGATATTGATGTATTTTTAAAAAGGCAATTTTGAGTCTGTTATGAGACTTACCCGTCATCTTGCATCACTATTCACCATCCACATTTGTTCTAATAGATTTTCAATAAAAATCGTATTTTCCCCTCCTGTTAAACCAACGTGACTCATAAATACGCTAAAATTGCTTTCCCAGGTATCAAAATGAAACCCAAGTGCAACAGCATTCATCCAATGAAAGAAAACGAAAAGCCAAACATAGATGCCAAACTGGAAGAATTTTCCGATGACGATGATGATAGCCTTATGGACGTCACTCTTCCAATGAACAAGAAATGTTATGTTATCTATGTCATTGCCTTCATTTCGTTCGCCTGTTTCATCGTTGTTATCGTCGTGCTGAAGGAAGAGTTGGGTCACCCAAATCATATTCAAAACTAAATTGTTTTTTCCGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTTTTGAGATTTTTGAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGTAGGTCTTCAATTTTGTTCCGCTTATTTAGGTAGGAGCCTAGATAGGAGTCAAAAATTTCCTAATTCATGCTCTCCCTCGGTTTGACGTTCGTACAGCTGATGTAGGTTTGTACCATTCTGACTATACAATCAAGCTATATAATCTCGTGTACGATTCGGAAGACTGCATTCATATAGTAGTATTTTTCAGTGCTCTCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTTGTTTCCAGATAGGTAAAGGCAACCGTCGGCGAAATATGCTACAGCTTCGATCTGATGAGAAACCGAAGAAACCTGTGC</canonical>
            <polymorphic>GGTCTTGCTCATTTCCGAAAGCTCGTCAAGTTTGATATTGATGTATTTTTAAAAAGGCAATTTTGAGTCTGTTATGAGACTTACCCGTCATCTTGCATCACTATTCACCATCCACATTTGTTCTAATAGATTTTCAATAAAAATCGTATTTTCCCCTCCTGTTAAACCAACGTGACTCATAAATACGCTAAAATTGCTTTCCCAGGTATCAAAATGAAACCCAAGTGCAACAGCATTCATCCAATGAAAGAAAACGAAAAGCCAAACATAGATGCCAAACTGGAAGAATTTTCCGATGACGATGATGATAGCCTTATGGACGTCACTCTTCCAATGAACAAGAAATGTTATGTTATCTATGTCATTGCCTTCATTTCGTTCGCCTGTTTCATCGTTGTTATCGTCGTGCTGAAGGAAGAGTTGGGTCACCCAAATCATATTCAAAACTAAATTGTTTTTTCCGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTKTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTTTTGAGATTTTTGAAAGTGAGCTCTTTCTGTTTTTCCAAAAGTTGGCATGGAAACGGAAGTAGAACGGAAGTAGGTCTTCAATTTTGTTCCGCTTATTTAGGTAGGAGCCTAGATAGGAGTCAAAAATTTCCTAATTCATGCTCTCCCTCGGTTTGACGTTCGTACAGCTGATGTAGGTTTGTACCATTCTGACTATACAATCAAGCTATATAATCTCGTGTACGATTCGGAAGACTGCATTCATATAGTAGTATTTTTCAGTGCTCTCATTTTGATTTTATCAGTCTTATCATAGTTTCATTCTCATGAAAAGTTTTGTTTCCAGATAGGTAAAGGCAACCGTCGGCGAAATATGCTACAGCTTCGATCTGATGAGAAACCGAAGAAACCTGTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>500 338 113 49</canonical_bands>
                <polymorphic_bands>838 113 49</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCTATGTCATTGCCTTCATTT</pcr_primer_p1>
		<pcr_primer_p2>AACCTAATGAACATTTCGTGTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TATCTATGTCATTGCCTTCATTTCGTTCGCCTGTTTCATCGTTGTTATCGTCGTGCTGAAGGAAGAGTTGGGTCACCCAAATCATATTCAAAACTAAATTGTTTTTTCCGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTTTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTT</canonical_amplicon>
		<polymorphic_amplicon>TATCTATGTCATTGCCTTCATTTCGTTCGCCTGTTTCATCGTTGTTATCGTCGTGCTGAAGGAAGAGTTGGGTCACCCAAATCATATTCAAAACTAAATTGTTTTTTCCGAATTTGAATTGTAATTATATGGAAAGAATAAAGTTTKTAAGCAATACATGTGTTTGAACACATGAATTAGAGAAGAACTGGAGCACATGTTGAAGTTTCAAAACAGCATGTCTGACATTGGACACGAAATGTTCATTAGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38573</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>579028</contig_pos>
        <strand>+</strand>
        <context>TTTTGAAGTT[C/T]AACCACCTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGTCCCGAATCCCATCATTTTAATTGCGAAATTGCTCATTTTTGAAGTT</left_flank>
        <right_flank>AACCACCTGTTGTTGCACTTTTTCGAGAGACCTTTTCAGAAATACCCATC</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTAGAAAAGTGAAACAATTGATTGAACCGGGACATCAAAAAAACTCCAAATTAAGAAAAAAAAATAGAGTCCGAAATGGCTGTGTCTAAAGTATCAACCTGATCCAGAGATATACATGTTTTAATTCCTACCAGACTTGCCAGAAAGTGGAATTTTTATGCTCAAAAGTCGGAATCCTTGACACCACTGATCTTGACGAGCTGATTCTAATGTTTCAGTAAATGAATTTCTTACGTTTTCTTCCTGTCAGAGAGAATAATGTCTATCAAATTTCGTGTTTTTCAACTAGATTTCAAACATTTGCATTTTTTCATTTCAAAACGAAGATTCCAATACTTTCATAATCAGCTTTTCTCAATATTTCCCCACATTTTTTCTAGTTTCAAAATAGAAACTGTAAGACTCAAGTTGAAACCATTCTCATGGCATTAGAATACCATAGAATCTATGTCCCGAATCCCATCATTTTAATTGCGAAATTGCTCATTTTTGAAGTTTAACCACCTGTTGTTGCACTTTTTCGAGAGACCTTTTCAGAAATACCCATCTATTAACGACCCTCTTTTTTAGTACCATTTTTGAATAAGAGAAAACGAGTAATATGTAGACGCAGAGCGGCGCAGGTGCGGATTCATAATGTCATCACCTGTTAATAGTGCATTGTTTCGAAGACCCCGGGGTCGAAATATGGGCGGGATCTACAGTAAGAGCAATAAGTGGGCGTGGCCTACAGAAAAATCGAGAATAAAAGTCGCGTGATTTATCAAAAATCGTACATTCTCCTTCTTCCTCATCCCCAGCTGACCACTCCGAGCACTCTGTGAGCACCGACTGGTACACCATATTGGTGGCACCTGTTGGTAGTTCTTGTGGAGGTCTTGTGTTCAGCTCATCAGAAAGTCTGCCTCTGTCTTTCTTCATCAAACATGCATTCCGTTCTCTATCGGAATTGTTTATTTGAGTCTCCCATTTTTTCCCCAGTTGTCATCAATCAGCAT</canonical>
            <polymorphic>ATTTAGAAAAGTGAAACAATTGATTGAACCGGGACATCAAAAAAACTCCAAATTAAGAAAAAAAAATAGAGTCCGAAATGGCTGTGTCTAAAGTATCAACCTGATCCAGAGATATACATGTTTTAATTCCTACCAGACTTGCCAGAAAGTGGAATTTTTATGCTCAAAAGTCGGAATCCTTGACACCACTGATCTTGACGAGCTGATTCTAATGTTTCAGTAAATGAATTTCTTACGTTTTCTTCCTGTCAGAGAGAATAATGTCTATCAAATTTCGTGTTTTTCAACTAGATTTCAAACATTTGCATTTTTTCATTTCAAAACGAAGATTCCAATACTTTCATAATCAGCTTTTCTCAATATTTCCCCACATTTTTTCTAGTTTCAAAATAGAAACTGTAAGACTCAAGTTGAAACCATTCTCATGGCATTAGAATACCATAGAATCTATGTCCCGAATCCCATCATTTTAATTGCGAAATTGCTCATTTTTGAAGTTYAACCACCTGTTGTTGCACTTTTTCGAGAGACCTTTTCAGAAATACCCATCTATTAACGACCCTCTTTTTTAGTACCATTTTTGAATAAGAGAAAACGAGTAATATGTAGACGCAGAGCGGCGCAGGTGCGGATTCATAATGTCATCACCTGTTAATAGTGCATTGTTTCGAAGACCCCGGGGTCGAAATATGGGCGGGATCTACAGTAAGAGCAATAAGTGGGCGTGGCCTACAGAAAAATCGAGAATAAAAGTCGCGTGATTTATCAAAAATCGTACATTCTCCTTCTTCCTCATCCCCAGCTGACCACTCCGAGCACTCTGTGAGCACCGACTGGTACACCATATTGGTGGCACCTGTTGGTAGTTCTTGTGGAGGTCTTGTGTTCAGCTCATCAGAAAGTCTGCCTCTGTCTTTCTTCATCAAACATGCATTCCGTTCTCTATCGGAATTGTTTATTTGAGTCTCCCATTTTTTCCCCAGTTGTCATCAATCAGCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>348 347 99 70 54 53 29</canonical_bands>
                <polymorphic_bands>348 347 99 83 70 53</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGCATTAGAATACCATAGAATC</pcr_primer_p1>
		<pcr_primer_p2>CTTCGAAACAATGCACTATTAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGGCATTAGAATACCATAGAATCTATGTCCCGAATCCCATCATTTTAATTGCGAAATTGCTCATTTTTGAAGTTTAACCACCTGTTGTTGCACTTTTTCGAGAGACCTTTTCAGAAATACCCATCTATTAACGACCCTCTTTTTTAGTACCATTTTTGAATAAGAGAAAACGAGTAATATGTAGACGCAGAGCGGCGCAGGTGCGGATTCATAATGTCATCACCTGTTAATAGTGCATTGTTTCGAAG</canonical_amplicon>
		<polymorphic_amplicon>TGGCATTAGAATACCATAGAATCTATGTCCCGAATCCCATCATTTTAATTGCGAAATTGCTCATTTTTGAAGTTYAACCACCTGTTGTTGCACTTTTTCGAGAGACCTTTTCAGAAATACCCATCTATTAACGACCCTCTTTTTTAGTACCATTTTTGAATAAGAGAAAACGAGTAATATGTAGACGCAGAGCGGCGCAGGTGCGGATTCATAATGTCATCACCTGTTAATAGTGCATTGTTTCGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38574</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>579074</contig_pos>
        <strand>+</strand>
        <context>TCAGAAAKAC[C/G]CATCTATTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGTTTAACCACCTGTTGTTGCACTTTTTCGAGAGACCTTTTCAGAAATAC</left_flank>
        <right_flank>CATCTATTAACGACCCTCTTTTTTAGTACCATTTTTGAATAAGAGAAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAAATTAAGAAAAAAAAATAGAGTCCGAAATGGCTGTGTCTAAAGTATCAACCTGATCCAGAGATATACATGTTTTAATTCCTACCAGACTTGCCAGAAAGTGGAATTTTTATGCTCAAAAGTCGGAATCCTTGACACCACTGATCTTGACGAGCTGATTCTAATGTTTCAGTAAATGAATTTCTTACGTTTTCTTCCTGTCAGAGAGAATAATGTCTATCAAATTTCGTGTTTTTCAACTAGATTTCAAACATTTGCATTTTTTCATTTCAAAACGAAGATTCCAATACTTTCATAATCAGCTTTTCTCAATATTTCCCCACATTTTTTCTAGTTTCAAAATAGAAACTGTAAGACTCAAGTTGAAACCATTCTCATGGCATTAGAATACCATAGAATCTATGTCCCGAATCCCATCATTTTAATTGCGAAATTGCTCATTTTTGAAGTTTAACCACCTGTTGTTGCACTTTTTCGAGAGACCTTTTCAGAAATACCCATCTATTAACGACCCTCTTTTTTAGTACCATTTTTGAATAAGAGAAAACGAGTAATATGTAGACGCAGAGCGGCGCAGGTGCGGATTCATAATGTCATCACCTGTTAATAGTGCATTGTTTCGAAGACCCCGGGGTCGAAATATGGGCGGGATCTACAGTAAGAGCAATAAGTGGGCGTGGCCTACAGAAAAATCGAGAATAAAAGTCGCGTGATTTATCAAAAATCGTACATTCTCCTTCTTCCTCATCCCCAGCTGACCACTCCGAGCACTCTGTGAGCACCGACTGGTACACCATATTGGTGGCACCTGTTGGTAGTTCTTGTGGAGGTCTTGTGTTCAGCTCATCAGAAAGTCTGCCTCTGTCTTTCTTCATCAAACATGCATTCCGTTCTCTATCGGAATTGTTTATTTGAGTCTCCCATTTTTTCCCCAGTTGTCATCAATCAGCATGATCTACAAAAACCATTTAGAACAGTCGAAAAAACAAGACTGCATG</canonical>
            <polymorphic>TCCAAATTAAGAAAAAAAAATAGAGTCCGAAATGGCTGTGTCTAAAGTATCAACCTGATCCAGAGATATACATGTTTTAATTCCTACCAGACTTGCCAGAAAGTGGAATTTTTATGCTCAAAAGTCGGAATCCTTGACACCACTGATCTTGACGAGCTGATTCTAATGTTTCAGTAAATGAATTTCTTACGTTTTCTTCCTGTCAGAGAGAATAATGTCTATCAAATTTCGTGTTTTTCAACTAGATTTCAAACATTTGCATTTTTTCATTTCAAAACGAAGATTCCAATACTTTCATAATCAGCTTTTCTCAATATTTCCCCACATTTTTTCTAGTTTCAAAATAGAAACTGTAAGACTCAAGTTGAAACCATTCTCATGGCATTAGAATACCATAGAATCTATGTCCCGAATCCCATCATTTTAATTGCGAAATTGCTCATTTTTGAAGTTTAACCACCTGTTGTTGCACTTTTTCGAGAGACCTTTTCAGAAATACSCATCTATTAACGACCCTCTTTTTTAGTACCATTTTTGAATAAGAGAAAACGAGTAATATGTAGACGCAGAGCGGCGCAGGTGCGGATTCATAATGTCATCACCTGTTAATAGTGCATTGTTTCGAAGACCCCGGGGTCGAAATATGGGCGGGATCTACAGTAAGAGCAATAAGTGGGCGTGGCCTACAGAAAAATCGAGAATAAAAGTCGCGTGATTTATCAAAAATCGTACATTCTCCTTCTTCCTCATCCCCAGCTGACCACTCCGAGCACTCTGTGAGCACCGACTGGTACACCATATTGGTGGCACCTGTTGGTAGTTCTTGTGGAGGTCTTGTGTTCAGCTCATCAGAAAGTCTGCCTCTGTCTTTCTTCATCAAACATGCATTCCGTTCTCTATCGGAATTGTTTATTTGAGTCTCCCATTTTTTCCCCAGTTGTCATCAATCAGCATGATCTACAAAAACCATTTAGAACAGTCGAAAAAACAAGACTGCATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGCATTAGAATACCATAGAATC</pcr_primer_p1>
		<pcr_primer_p2>CTTCGAAACAATGCACTATTAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TGGCATTAGAATACCATAGAATCTATGTCCCGAATCCCATCATTTTAATTGCGAAATTGCTCATTTTTGAAGTTTAACCACCTGTTGTTGCACTTTTTCGAGAGACCTTTTCAGAAATACCCATCTATTAACGACCCTCTTTTTTAGTACCATTTTTGAATAAGAGAAAACGAGTAATATGTAGACGCAGAGCGGCGCAGGTGCGGATTCATAATGTCATCACCTGTTAATAGTGCATTGTTTCGAAG</canonical_amplicon>
		<polymorphic_amplicon>TGGCATTAGAATACCATAGAATCTATGTCCCGAATCCCATCATTTTAATTGCGAAATTGCTCATTTTTGAAGTTTAACCACCTGTTGTTGCACTTTTTCGAGAGACCTTTTCAGAAATACSCATCTATTAACGACCCTCTTTTTTAGTACCATTTTTGAATAAGAGAAAACGAGTAATATGTAGACGCAGAGCGGCGCAGGTGCGGATTCATAATGTCATCACCTGTTAATAGTGCATTGTTTCGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38575</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>579168</contig_pos>
        <strand>+</strand>
        <context>GGATTCATAA[G/T]GTCATCACCT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGAAAACGAGTAATATGTAGACGCAGAGCGGCGCAGGTGCGGATTCATAA</left_flank>
        <right_flank>GTCATCACCTGTTAATAGTGCATTGTTTCGAAGACCCCGGGGTCGAAATA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCAGAAAGTGGAATTTTTATGCTCAAAAGTCGGAATCCTTGACACCACTGATCTTGACGAGCTGATTCTAATGTTTCAGTAAATGAATTTCTTACGTTTTCTTCCTGTCAGAGAGAATAATGTCTATCAAATTTCGTGTTTTTCAACTAGATTTCAAACATTTGCATTTTTTCATTTCAAAACGAAGATTCCAATACTTTCATAATCAGCTTTTCTCAATATTTCCCCACATTTTTTCTAGTTTCAAAATAGAAACTGTAAGACTCAAGTTGAAACCATTCTCATGGCATTAGAATACCATAGAATCTATGTCCCGAATCCCATCATTTTAATTGCGAAATTGCTCATTTTTGAAGTTTAACCACCTGTTGTTGCACTTTTTCGAGAGACCTTTTCAGAAATACCCATCTATTAACGACCCTCTTTTTTAGTACCATTTTTGAATAAGAGAAAACGAGTAATATGTAGACGCAGAGCGGCGCAGGTGCGGATTCATAATGTCATCACCTGTTAATAGTGCATTGTTTCGAAGACCCCGGGGTCGAAATATGGGCGGGATCTACAGTAAGAGCAATAAGTGGGCGTGGCCTACAGAAAAATCGAGAATAAAAGTCGCGTGATTTATCAAAAATCGTACATTCTCCTTCTTCCTCATCCCCAGCTGACCACTCCGAGCACTCTGTGAGCACCGACTGGTACACCATATTGGTGGCACCTGTTGGTAGTTCTTGTGGAGGTCTTGTGTTCAGCTCATCAGAAAGTCTGCCTCTGTCTTTCTTCATCAAACATGCATTCCGTTCTCTATCGGAATTGTTTATTTGAGTCTCCCATTTTTTCCCCAGTTGTCATCAATCAGCATGATCTACAAAAACCATTTAGAACAGTCGAAAAAACAAGACTGCATGACTCATTTTATTCTTACTTCCCCCTCTTTCTATCTGTTTCAAAAAATCCTTTTTTCTCCATCCATTTTCTTGATATTGAGGAGTCCTTAAAACA</canonical>
            <polymorphic>GCCAGAAAGTGGAATTTTTATGCTCAAAAGTCGGAATCCTTGACACCACTGATCTTGACGAGCTGATTCTAATGTTTCAGTAAATGAATTTCTTACGTTTTCTTCCTGTCAGAGAGAATAATGTCTATCAAATTTCGTGTTTTTCAACTAGATTTCAAACATTTGCATTTTTTCATTTCAAAACGAAGATTCCAATACTTTCATAATCAGCTTTTCTCAATATTTCCCCACATTTTTTCTAGTTTCAAAATAGAAACTGTAAGACTCAAGTTGAAACCATTCTCATGGCATTAGAATACCATAGAATCTATGTCCCGAATCCCATCATTTTAATTGCGAAATTGCTCATTTTTGAAGTTTAACCACCTGTTGTTGCACTTTTTCGAGAGACCTTTTCAGAAATACCCATCTATTAACGACCCTCTTTTTTAGTACCATTTTTGAATAAGAGAAAACGAGTAATATGTAGACGCAGAGCGGCGCAGGTGCGGATTCATAAKGTCATCACCTGTTAATAGTGCATTGTTTCGAAGACCCCGGGGTCGAAATATGGGCGGGATCTACAGTAAGAGCAATAAGTGGGCGTGGCCTACAGAAAAATCGAGAATAAAAGTCGCGTGATTTATCAAAAATCGTACATTCTCCTTCTTCCTCATCCCCAGCTGACCACTCCGAGCACTCTGTGAGCACCGACTGGTACACCATATTGGTGGCACCTGTTGGTAGTTCTTGTGGAGGTCTTGTGTTCAGCTCATCAGAAAGTCTGCCTCTGTCTTTCTTCATCAAACATGCATTCCGTTCTCTATCGGAATTGTTTATTTGAGTCTCCCATTTTTTCCCCAGTTGTCATCAATCAGCATGATCTACAAAAACCATTTAGAACAGTCGAAAAAACAAGACTGCATGACTCATTTTATTCTTACTTCCCCCTCTTTCTATCTGTTTCAAAAAATCCTTTTTTCTCCATCCATTTTCTTGATATTGAGGAGTCCTTAAAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATTGCTCATTTTTGAAGTT</pcr_primer_p1>
		<pcr_primer_p2>CCCACTTATTGCTCTTACTGTAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAATTGCTCATTTTTGAAGTTTAACCACCTGTTGTTGCACTTTTTCGAGAGACCTTTTCAGAAATACCCATCTATTAACGACCCTCTTTTTTAGTACCATTTTTGAATAAGAGAAAACGAGTAATATGTAGACGCAGAGCGGCGCAGGTGCGGATTCATAATGTCATCACCTGTTAATAGTGCATTGTTTCGAAGACCCCGGGGTCGAAATATGGGCGGGATCTACAGTAAGAGCAATAAGTGGG</canonical_amplicon>
		<polymorphic_amplicon>GAAATTGCTCATTTTTGAAGTTTAACCACCTGTTGTTGCACTTTTTCGAGAGACCTTTTCAGAAATACCCATCTATTAACGACCCTCTTTTTTAGTACCATTTTTGAATAAGAGAAAACGAGTAATATGTAGACGCAGAGCGGCGCAGGTGCGGATTCATAAKGTCATCACCTGTTAATAGTGCATTGTTTCGAAGACCCCGGGGTCGAAATATGGGCGGGATCTACAGTAAGAGCAATAAGTGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38576</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>579472</contig_pos>
        <strand>+</strand>
        <context>TTCCGTTCTC[C/T]ATCGGAATTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCAGAAAGTCTGCCTCTGTCTTTCTTCATCAAACATGCATTCCGTTCTC</left_flank>
        <right_flank>ATCGGAATTGTTTATTTGAGTCTCCCATTTTTTCCCCAGTTGTCATCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCTATGTCCCGAATCCCATCATTTTAATTGCGAAATTGCTCATTTTTGAAGTTTAACCACCTGTTGTTGCACTTTTTCGAGAGACCTTTTCAGAAATACCCATCTATTAACGACCCTCTTTTTTAGTACCATTTTTGAATAAGAGAAAACGAGTAATATGTAGACGCAGAGCGGCGCAGGTGCGGATTCATAATGTCATCACCTGTTAATAGTGCATTGTTTCGAAGACCCCGGGGTCGAAATATGGGCGGGATCTACAGTAAGAGCAATAAGTGGGCGTGGCCTACAGAAAAATCGAGAATAAAAGTCGCGTGATTTATCAAAAATCGTACATTCTCCTTCTTCCTCATCCCCAGCTGACCACTCCGAGCACTCTGTGAGCACCGACTGGTACACCATATTGGTGGCACCTGTTGGTAGTTCTTGTGGAGGTCTTGTGTTCAGCTCATCAGAAAGTCTGCCTCTGTCTTTCTTCATCAAACATGCATTCCGTTCTCTATCGGAATTGTTTATTTGAGTCTCCCATTTTTTCCCCAGTTGTCATCAATCAGCATGATCTACAAAAACCATTTAGAACAGTCGAAAAAACAAGACTGCATGACTCATTTTATTCTTACTTCCCCCTCTTTCTATCTGTTTCAAAAAATCCTTTTTTCTCCATCCATTTTCTTGATATTGAGGAGTCCTTAAAACAGTGTGCCATGCAGATAGTCTGAAAAAAAAGGCGTTGTGCTCAGAAATGATTTAGCTAATTTCGAACAGTCCCTCAAAAGTGGAGCGAGTAGAAGAACATTCTACGGAAACCAGAAAAAAACGACTTGTTATAGTTTCAAGAAATTTTCGATCAATCTTAGTGTATTCTAGCAACCTCAATCTCCCTCTGAATTCAATCCGTTCTACTTTCCCCGTTTTGAACTGCTTTTTTCCAGAATGGGTACTCTTAAATACCACGTCCTCATTCTTCTTGGCTTACTTGCCATGACATCATTTGCAACTAT</canonical>
            <polymorphic>AATCTATGTCCCGAATCCCATCATTTTAATTGCGAAATTGCTCATTTTTGAAGTTTAACCACCTGTTGTTGCACTTTTTCGAGAGACCTTTTCAGAAATACCCATCTATTAACGACCCTCTTTTTTAGTACCATTTTTGAATAAGAGAAAACGAGTAATATGTAGACGCAGAGCGGCGCAGGTGCGGATTCATAATGTCATCACCTGTTAATAGTGCATTGTTTCGAAGACCCCGGGGTCGAAATATGGGCGGGATCTACAGTAAGAGCAATAAGTGGGCGTGGCCTACAGAAAAATCGAGAATAAAAGTCGCGTGATTTATCAAAAATCGTACATTCTCCTTCTTCCTCATCCCCAGCTGACCACTCCGAGCACTCTGTGAGCACCGACTGGTACACCATATTGGTGGCACCTGTTGGTAGTTCTTGTGGAGGTCTTGTGTTCAGCTCATCAGAAAGTCTGCCTCTGTCTTTCTTCATCAAACATGCATTCCGTTCTCYATCGGAATTGTTTATTTGAGTCTCCCATTTTTTCCCCAGTTGTCATCAATCAGCATGATCTACAAAAACCATTTAGAACAGTCGAAAAAACAAGACTGCATGACTCATTTTATTCTTACTTCCCCCTCTTTCTATCTGTTTCAAAAAATCCTTTTTTCTCCATCCATTTTCTTGATATTGAGGAGTCCTTAAAACAGTGTGCCATGCAGATAGTCTGAAAAAAAAGGCGTTGTGCTCAGAAATGATTTAGCTAATTTCGAACAGTCCCTCAAAAGTGGAGCGAGTAGAAGAACATTCTACGGAAACCAGAAAAAAACGACTTGTTATAGTTTCAAGAAATTTTCGATCAATCTTAGTGTATTCTAGCAACCTCAATCTCCCTCTGAATTCAATCCGTTCTACTTTCCCCGTTTTGAACTGCTTTTTTCCAGAATGGGTACTCTTAAATACCACGTCCTCATTCTTCTTGGCTTACTTGCCATGACATCATTTGCAACTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATCAAAAATCGTACATTCTCC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGTAGATCATGCTGATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTATCAAAAATCGTACATTCTCCTTCTTCCTCATCCCCAGCTGACCACTCCGAGCACTCTGTGAGCACCGACTGGTACACCATATTGGTGGCACCTGTTGGTAGTTCTTGTGGAGGTCTTGTGTTCAGCTCATCAGAAAGTCTGCCTCTGTCTTTCTTCATCAAACATGCATTCCGTTCTCTATCGGAATTGTTTATTTGAGTCTCCCATTTTTTCCCCAGTTGTCATCAATCAGCATGATCTACAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TTATCAAAAATCGTACATTCTCCTTCTTCCTCATCCCCAGCTGACCACTCCGAGCACTCTGTGAGCACCGACTGGTACACCATATTGGTGGCACCTGTTGGTAGTTCTTGTGGAGGTCTTGTGTTCAGCTCATCAGAAAGTCTGCCTCTGTCTTTCTTCATCAAACATGCATTCCGTTCTCYATCGGAATTGTTTATTTGAGTCTCCCATTTTTTCCCCAGTTGTCATCAATCAGCATGATCTACAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38577</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>581363</contig_pos>
        <strand>+</strand>
        <context>ATKTTCAATG[A/G]TTTWTTGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATTTTCAATG</left_flank>
        <right_flank>TTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGTCATGTCTCTCTTGGACTGATCAAAAGTTGCCATGACAGTTTGGAGACTAGTCTATCAACCACTCCAGAAGTTTCCACGTCTACAGAAGTCCCATCGACCACTTCTCCAAGCACTGGATTCTCCTACTCTACTTTCGTTGACTTCGTCATTCTCGTGGCTGTCATTGCTTTCATCGTGGTCGCCTTTGAATGCTGGAAGTTTTGCTATAGATGCGGAAAGCCGATCAATCGTCAGGTGATGCGGATGTCTCAGCTCGTCGACCATAGCATCTTGGTAAGAATGTATCTGCTAATAATCTATGAATTCTTGCGTTTTTCCAGGAAATTGACAACCCAGCGTTTGCTATCAGCCAGAACGAACAAGCTCTTACCACTGACAATGGAGAACTACCAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTCCCTCCGAAAGTTGTCTATACTGACCATTTTCAAGAAAAACCGCCTTGGTGAAGGCCTATTTCGCGTCATCATTTGAGCGAAATCGAAAGAAATGACTTCTATTCAACTTTTAGATAATTCTCAGATATCTGAATATTGTTGCCTCTTTCTAGAAATGAACGAAAACTTCTTAAAATCGTTCTCCCGAAAAAATGTTTTCTTCTCCTCGAGGACTACACGCGAAGTGGAAGAGGAAGCGCAACCACGTGACCATCCCTTCGTTTTTTGAGCGGTTTTTCAAAATATGGACGTCAGGATATTTATCGATGTTTCGTGGATTTCATGGTAAGTTTTCAATCCATTTTGATGAAAATTTTCTGAAATTCGACAAAGTTCTCA</canonical>
            <polymorphic>TTCGTCATGTCTCTCTTGGACTGATCAAAAGTTGCCATGACAGTTTGGAGACTAGTCTATCAACCACTCCAGAAGTTTCCACGTCTACAGAAGTCCCATCGACCACTTCTCCAAGCACTGGATTCTCCTACTCTACTTTCGTTGACTTCGTCATTCTCGTGGCTGTCATTGCTTTCATCGTGGTCGCCTTTGAATGCTGGAAGTTTTGCTATAGATGCGGAAAGCCGATCAATCGTCAGGTGATGCGGATGTCTCAGCTCGTCGACCATAGCATCTTGGTAAGAATGTATCTGCTAATAATCTATGAATTCTTGCGTTTTTCCAGGAAATTGACAACCCAGCGTTTGCTATCAGCCAGAACGAACAAGCTCTTACCACTGACAATGGAGAACTACCAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATTTTCAATGRTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTCCCTCCGAAAGTTGTCTATACTGACCATTTTCAAGAAAAACCGCCTTGGTGAAGGCCTATTTCGCGTCATCATTTGAGCGAAATCGAAAGAAATGACTTCTATTCAACTTTTAGATAATTCTCAGATATCTGAATATTGTTGCCTCTTTCTAGAAATGAACGAAAACTTCTTAAAATCGTTCTCCCGAAAAAATGTTTTCTTCTCCTCGAGGACTACACGCGAAGTGGAAGAGGAAGCGCAACCACGTGACCATCCCTTCGTTTTTTGAGCGGTTTTTCAAAATATGGACGTCAGGATATTTATCGATGTTTCGTGGATTTCATGGTAAGTTTTCAATCCATTTTGATGAAAATTTTCTGAAATTCGACAAAGTTCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACCACTGACAATGGAGAACTAC</pcr_primer_p1>
		<pcr_primer_p2>GAAAGAACGATGTGAGAACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACCACTGACAATGGAGAACTACCAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTC</canonical_amplicon>
		<polymorphic_amplicon>TACCACTGACAATGGAGAACTACCAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATTTTCAATGRTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38578</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>581429</contig_pos>
        <strand>+</strand>
        <context>TGAATGAAAT[A/G]CTTACTCGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAAT</left_flank>
        <right_flank>CTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCCAGAAGTTTCCACGTCTACAGAAGTCCCATCGACCACTTCTCCAAGCACTGGATTCTCCTACTCTACTTTCGTTGACTTCGTCATTCTCGTGGCTGTCATTGCTTTCATCGTGGTCGCCTTTGAATGCTGGAAGTTTTGCTATAGATGCGGAAAGCCGATCAATCGTCAGGTGATGCGGATGTCTCAGCTCGTCGACCATAGCATCTTGGTAAGAATGTATCTGCTAATAATCTATGAATTCTTGCGTTTTTCCAGGAAATTGACAACCCAGCGTTTGCTATCAGCCAGAACGAACAAGCTCTTACCACTGACAATGGAGAACTACCAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTCCCTCCGAAAGTTGTCTATACTGACCATTTTCAAGAAAAACCGCCTTGGTGAAGGCCTATTTCGCGTCATCATTTGAGCGAAATCGAAAGAAATGACTTCTATTCAACTTTTAGATAATTCTCAGATATCTGAATATTGTTGCCTCTTTCTAGAAATGAACGAAAACTTCTTAAAATCGTTCTCCCGAAAAAATGTTTTCTTCTCCTCGAGGACTACACGCGAAGTGGAAGAGGAAGCGCAACCACGTGACCATCCCTTCGTTTTTTGAGCGGTTTTTCAAAATATGGACGTCAGGATATTTATCGATGTTTCGTGGATTTCATGGTAAGTTTTCAATCCATTTTGATGAAAATTTTCTGAAATTCGACAAAGTTCTCATGGGTTTTATGCTGGGGTAGGAATAGTCGAACATAAACAGAACTTTGAATGATCAATGAAATATTT</canonical>
            <polymorphic>CTCCAGAAGTTTCCACGTCTACAGAAGTCCCATCGACCACTTCTCCAAGCACTGGATTCTCCTACTCTACTTTCGTTGACTTCGTCATTCTCGTGGCTGTCATTGCTTTCATCGTGGTCGCCTTTGAATGCTGGAAGTTTTGCTATAGATGCGGAAAGCCGATCAATCGTCAGGTGATGCGGATGTCTCAGCTCGTCGACCATAGCATCTTGGTAAGAATGTATCTGCTAATAATCTATGAATTCTTGCGTTTTTCCAGGAAATTGACAACCCAGCGTTTGCTATCAGCCAGAACGAACAAGCTCTTACCACTGACAATGGAGAACTACCAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAATRCTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTCCCTCCGAAAGTTGTCTATACTGACCATTTTCAAGAAAAACCGCCTTGGTGAAGGCCTATTTCGCGTCATCATTTGAGCGAAATCGAAAGAAATGACTTCTATTCAACTTTTAGATAATTCTCAGATATCTGAATATTGTTGCCTCTTTCTAGAAATGAACGAAAACTTCTTAAAATCGTTCTCCCGAAAAAATGTTTTCTTCTCCTCGAGGACTACACGCGAAGTGGAAGAGGAAGCGCAACCACGTGACCATCCCTTCGTTTTTTGAGCGGTTTTTCAAAATATGGACGTCAGGATATTTATCGATGTTTCGTGGATTTCATGGTAAGTTTTCAATCCATTTTGATGAAAATTTTCTGAAATTCGACAAAGTTCTCATGGGTTTTATGCTGGGGTAGGAATAGTCGAACATAAACAGAACTTTGAATGATCAATGAAATATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACCACTGACAATGGAGAACTAC</pcr_primer_p1>
		<pcr_primer_p2>GAAAGAACGATGTGAGAACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACCACTGACAATGGAGAACTACCAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTC</canonical_amplicon>
		<polymorphic_amplicon>TACCACTGACAATGGAGAACTACCAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAATRCTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38579</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>581534</contig_pos>
        <strand>+</strand>
        <context>ACCGCCTTGG[A/T]GAAGGCCTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCCTCCGAAAGTTGTCTATACTGACCATTTTCAAGAAAAACCGCCTTGG</left_flank>
        <right_flank>GAAGGCCTATTTCGCGTCATCATTTGAGCGAAATCGAAAGAAATGACTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTCATCGTGGTCGCCTTTGAATGCTGGAAGTTTTGCTATAGATGCGGAAAGCCGATCAATCGTCAGGTGATGCGGATGTCTCAGCTCGTCGACCATAGCATCTTGGTAAGAATGTATCTGCTAATAATCTATGAATTCTTGCGTTTTTCCAGGAAATTGACAACCCAGCGTTTGCTATCAGCCAGAACGAACAAGCTCTTACCACTGACAATGGAGAACTACCAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTCCCTCCGAAAGTTGTCTATACTGACCATTTTCAAGAAAAACCGCCTTGGTGAAGGCCTATTTCGCGTCATCATTTGAGCGAAATCGAAAGAAATGACTTCTATTCAACTTTTAGATAATTCTCAGATATCTGAATATTGTTGCCTCTTTCTAGAAATGAACGAAAACTTCTTAAAATCGTTCTCCCGAAAAAATGTTTTCTTCTCCTCGAGGACTACACGCGAAGTGGAAGAGGAAGCGCAACCACGTGACCATCCCTTCGTTTTTTGAGCGGTTTTTCAAAATATGGACGTCAGGATATTTATCGATGTTTCGTGGATTTCATGGTAAGTTTTCAATCCATTTTGATGAAAATTTTCTGAAATTCGACAAAGTTCTCATGGGTTTTATGCTGGGGTAGGAATAGTCGAACATAAACAGAACTTTGAATGATCAATGAAATATTTTTTCAGAATTCTCCAGCACGGGAGACTTTTGCTGAAATGAAGGAAATTAGATGGAAAAGAAAACAAGGATTCAGTTATCTGCTGGACAACGCTTTCACAAACCTA</canonical>
            <polymorphic>CTTTCATCGTGGTCGCCTTTGAATGCTGGAAGTTTTGCTATAGATGCGGAAAGCCGATCAATCGTCAGGTGATGCGGATGTCTCAGCTCGTCGACCATAGCATCTTGGTAAGAATGTATCTGCTAATAATCTATGAATTCTTGCGTTTTTCCAGGAAATTGACAACCCAGCGTTTGCTATCAGCCAGAACGAACAAGCTCTTACCACTGACAATGGAGAACTACCAACGATGGAAAATACTACCGCCTGAAATGCGAGGACAAGATACTCTAATCGTAGTTTTTGAATATTCAACCTTATATGTAATCTCCGAATTTGATTTTCAATGTTTTATTGTTTTTTTTTTGTAATTTTTGAAACGTAATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTCCCTCCGAAAGTTGTCTATACTGACCATTTTCAAGAAAAACCGCCTTGGWGAAGGCCTATTTCGCGTCATCATTTGAGCGAAATCGAAAGAAATGACTTCTATTCAACTTTTAGATAATTCTCAGATATCTGAATATTGTTGCCTCTTTCTAGAAATGAACGAAAACTTCTTAAAATCGTTCTCCCGAAAAAATGTTTTCTTCTCCTCGAGGACTACACGCGAAGTGGAAGAGGAAGCGCAACCACGTGACCATCCCTTCGTTTTTTGAGCGGTTTTTCAAAATATGGACGTCAGGATATTTATCGATGTTTCGTGGATTTCATGGTAAGTTTTCAATCCATTTTGATGAAAATTTTCTGAAATTCGACAAAGTTCTCATGGGTTTTATGCTGGGGTAGGAATAGTCGAACATAAACAGAACTTTGAATGATCAATGAAATATTTTTTCAGAATTCTCCAGCACGGGAGACTTTTGCTGAAATGAAGGAAATTAGATGGAAAAGAAAACAAGGATTCAGTTATCTGCTGGACAACGCTTTCACAAACCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>173 167 147 135 79 67 62 60 48 18 12 11 9 8 4</canonical_bands>
                <polymorphic_bands>229 173 147 135 79 67 60 48 18 12 11 9 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTTGAACTTTGGCACAAT</pcr_primer_p1>
		<pcr_primer_p2>CTAGAAAGAGGCAACAATATTCA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>ATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTCCCTCCGAAAGTTGTCTATACTGACCATTTTCAAGAAAAACCGCCTTGGTGAAGGCCTATTTCGCGTCATCATTTGAGCGAAATCGAAAGAAATGACTTCTATTCAACTTTTAGATAATTCTCAGATATCTGAATATTGTTGCCTCTTTCTAG</canonical_amplicon>
		<polymorphic_amplicon>ATCTTGAACTTTGGCACAATTTGAATGAAATACTTACTCGCAGAGGCTTCCCTTGTTTTGAGTGATGCGGTTCTCACATCGTTCTTTCCCTCCGAAAGTTGTCTATACTGACCATTTTCAAGAAAAACCGCCTTGGWGAAGGCCTATTTCGCGTCATCATTTGAGCGAAATCGAAAGAAATGACTTCTATTCAACTTTTAGATAATTCTCAGATATCTGAATATTGTTGCCTCTTTCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38580</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>617753</contig_pos>
        <strand>+</strand>
        <context>GAAAATTTAT[C/G]TGTGTCTTCG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTAATTCGTCTCTCAAGATCCTTCTCAACTAGGATCCCCCGAAAATTTAT</left_flank>
        <right_flank>TGTGTCTTCGCTTCTTTCCGTTTTCGAGTGGTGGTTCCATAGCTCCGCGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCTCTAAGACTACTGTGAGCGAATTTTCGCTCTGTGTTTGCGTGAGAAGAAAAGACCGAAAGATTTGGTGAGACGGGTCGGAATGGGTGAGTGTGCGACGACGGGGCTTGGGGTCGTATGAGTGTAGGGTTGGCCGGGAAGAGAGCGGAGTGTTTTGGTGTGTATGTGCCCTTCCCAAGGTTAGCCACTGGGTCCCTCTTTTTTCTTATTATTGCCTAGAAGAAAATAGGACAATCGTCCTATAGTTATTCCTTTTTTTCCTGGTCCTTTTCGAGTCAAAACCATTGATTTTCAAAAAAAAAAATTATTTTAAAAATTATTTTAGTTTTTTTTCCCGAGTTTCCATGATTTTCAAGTTAGAAAAGTTTGCGTCCCTCACCCTTCTCTATAATAGGATTATCTTAGTTCTAAAACTTCAAAAAGCGCGCATCTCCACCTAGCCTGCACTTAATTCGTCTCTCAAGATCCTTCTCAACTAGGATCCCCCGAAAATTTATGTGTGTCTTCGCTTCTTTCCGTTTTCGAGTGGTGGTTCCATAGCTCCGCGCACGGAGCCAAGGCCGTCGTCGCGGTCGTAAATTGCCAGGTTTTATTCATATTCTGTGCGACTACCACACAAAAAAAAAACGCAGGAAAAAAGAGGAGAAGCTCCACCCACTCCAGAATCCTATCCCACAATGCTCTCCTCCTGCCTTTGTTTTTAATTCTAATCTTTAATTTCCCTCTATACCCCACACCATTCAATTCCTATCATGCGTCGAACTATTGCGCTTTTTAGAAAAGAACGCAAGGATCGCGACACGCCGGATAACAACTCAAAGATGTCTTCACCGGGTGGCGAGACCTCGTTGACTAAGAAGCCGGAGCTCGTTGCTCAAATCAAAATTGGACATTATATTCTGAAAGAGACGCTTGGAGTTGGTACCTTCGGAAAGGTTAAAGGTGAGTAGTGTTTTTTTTTGAATTAATTCTCTTCTTTTTGTCGAATTTTTGAAATC</canonical>
            <polymorphic>TATCTCTAAGACTACTGTGAGCGAATTTTCGCTCTGTGTTTGCGTGAGAAGAAAAGACCGAAAGATTTGGTGAGACGGGTCGGAATGGGTGAGTGTGCGACGACGGGGCTTGGGGTCGTATGAGTGTAGGGTTGGCCGGGAAGAGAGCGGAGTGTTTTGGTGTGTATGTGCCCTTCCCAAGGTTAGCCACTGGGTCCCTCTTTTTTCTTATTATTGCCTAGAAGAAAATAGGACAATCGTCCTATAGTTATTCCTTTTTTTCCTGGTCCTTTTCGAGTCAAAACCATTGATTTTCAAAAAAAAAAATTATTTTAAAAATTATTTTAGTTTTTTTTCCCGAGTTTCCATGATTTTCAAGTTAGAAAAGTTTGCGTCCCTCACCCTTCTCTATAATAGGATTATCTTAGTTCTAAAACTTCAAAAAGCGCGCATCTCCACCTAGCCTGCACTTAATTCGTCTCTCAAGATCCTTCTCAACTAGGATCCCCCGAAAATTTATSTGTGTCTTCGCTTCTTTCCGTTTTCGAGTGGTGGTTCCATAGCTCCGCGCACGGAGCCAAGGCCGTCGTCGCGGTCGTAAATTGCCAGGTTTTATTCATATTCTGTGCGACTACCACACAAAAAAAAAACGCAGGAAAAAAGAGGAGAAGCTCCACCCACTCCAGAATCCTATCCCACAATGCTCTCCTCCTGCCTTTGTTTTTAATTCTAATCTTTAATTTCCCTCTATACCCCACACCATTCAATTCCTATCATGCGTCGAACTATTGCGCTTTTTAGAAAAGAACGCAAGGATCGCGACACGCCGGATAACAACTCAAAGATGTCTTCACCGGGTGGCGAGACCTCGTTGACTAAGAAGCCGGAGCTCGTTGCTCAAATCAAAATTGGACATTATATTCTGAAAGAGACGCTTGGAGTTGGTACCTTCGGAAAGGTTAAAGGTGAGTAGTGTTTTTTTTTGAATTAATTCTCTTCTTTTTGTCGAATTTTTGAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>191 108 65 59 57 56 54 46 37 29 29 28 26 26 19 19 19 19 18 18 11 9 8 8 7 7 6 4 4 3 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>191 108 65 59 57 56 56 46 37 29 29 28 26 26 19 19 19 19 18 18 11 9 8 8 7 7 6 4 4 3 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTCCCTCACCCTTCTCTATAAT</pcr_primer_p1>
		<pcr_primer_p2>AGTCGCACAGAATATGAATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GTCCCTCACCCTTCTCTATAATAGGATTATCTTAGTTCTAAAACTTCAAAAAGCGCGCATCTCCACCTAGCCTGCACTTAATTCGTCTCTCAAGATCCTTCTCAACTAGGATCCCCCGAAAATTTATGTGTGTCTTCGCTTCTTTCCGTTTTCGAGTGGTGGTTCCATAGCTCCGCGCACGGAGCCAAGGCCGTCGTCGCGGTCGTAAATTGCCAGGTTTTATTCATATTCTGTGCGACT</canonical_amplicon>
		<polymorphic_amplicon>GTCCCTCACCCTTCTCTATAATAGGATTATCTTAGTTCTAAAACTTCAAAAAGCGCGCATCTCCACCTAGCCTGCACTTAATTCGTCTCTCAAGATCCTTCTCAACTAGGATCCCCCGAAAATTTATSTGTGTCTTCGCTTCTTTCCGTTTTCGAGTGGTGGTTCCATAGCTCCGCGCACGGAGCCAAGGCCGTCGTCGCGGTCGTAAATTGCCAGGTTTTATTCATATTCTGTGCGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38581</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>621028</contig_pos>
        <strand>+</strand>
        <context>CCCTTGAAAG[A/T]TTTTTTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCGCTTGTTTTCTCTGAATGCCAAATTCTCCCCCACCTTTCCCTTGAAAG</left_flank>
        <right_flank>TTTTTTTTTTTGAAAAAAGAATCATAACAAACTTTTCCTATATTTTAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGGATATGTCGGTGAGGGTTAACACATTTTTTTAATTCTACCAATCAGCTTTTCGTCGCTTCTACCTAACCCGGAACTGTATCTGTGGAGTTGGTCTTATAGAGTTACTAAGCTTTTTGAGTTTCATTTCTTTAATAATAGCTCAGAATCTGATTAATAATTCATCTCAGGATTTCCAGTGCGATGTGACACCACCACCATCGCCAGGAGGAGCCAAGCTGTCACAGACAATGCAATTTTTTGAGATTTGCGCTGCTCTAATTGGAACTTTGGCTCGTTAAGCCTGCACAAAACACTCCATTACTCTATTCATTCCCAGATTGATTCAAAATTGGTTCAATTTTTCGTAACTTTGCTGCAAATATTTTATGCTTCGAGCAAAAAAAACATTATTTTTGACTTTTGAGACACTTCTCAATTTCCCTTTAAAACCTCAGTCCTTTAGTGCCGCTTGTTTTCTCTGAATGCCAAATTCTCCCCCACCTTTCCCTTGAAAGTTTTTTTTTTTTGAAAAAAGAATCATAACAAACTTTTCCTATATTTTAAAAATCTTGTCATTAAATTTGTGTATCTGTGAATAGACCCCTTTTCTATATGCGAGTAGTATCTATTTCTTCTCCTAAAAATGGTTTGTATCTTTTTTTATCCGTTTCATACTTTTTTTTTGTCCAGTTCAGTCAAGCTGAATCCTTTGTAATATAAGAACCCAACTACAAAAATCTATTTTTTCGTAAGATTTTTATTGTAAATGAAGGATTTCATTGTAAAAAAATATAGGTGACTTGGGTTTAGAAAGATCCGGAAGCCACTTTCTTGGCTTTTTCTGCTTTTTTCTTCTTATATAGAGAGTAATTGTGCTCGGCGCTCATGTAAGCAGTCTCCAGAAACAGGAAAACGAATTCGCAACATGTCAAGAAAGAGATTCCGCACCAGAGACCCAACTGTCCACCGAAATCAGCTAACAAGTTGACGAACTGAAAGAAAACGGATTAAAAAAG</canonical>
            <polymorphic>TTCGGATATGTCGGTGAGGGTTAACACATTTTTTTAATTCTACCAATCAGCTTTTCGTCGCTTCTACCTAACCCGGAACTGTATCTGTGGAGTTGGTCTTATAGAGTTACTAAGCTTTTTGAGTTTCATTTCTTTAATAATAGCTCAGAATCTGATTAATAATTCATCTCAGGATTTCCAGTGCGATGTGACACCACCACCATCGCCAGGAGGAGCCAAGCTGTCACAGACAATGCAATTTTTTGAGATTTGCGCTGCTCTAATTGGAACTTTGGCTCGTTAAGCCTGCACAAAACACTCCATTACTCTATTCATTCCCAGATTGATTCAAAATTGGTTCAATTTTTCGTAACTTTGCTGCAAATATTTTATGCTTCGAGCAAAAAAAACATTATTTTTGACTTTTGAGACACTTCTCAATTTCCCTTTAAAACCTCAGTCCTTTAGTGCCGCTTGTTTTCTCTGAATGCCAAATTCTCCCCCACCTTTCCCTTGAAAGWTTTTTTTTTTTGAAAAAAGAATCATAACAAACTTTTCCTATATTTTAAAAATCTTGTCATTAAATTTGTGTATCTGTGAATAGACCCCTTTTCTATATGCGAGTAGTATCTATTTCTTCTCCTAAAAATGGTTTGTATCTTTTTTTATCCGTTTCATACTTTTTTTTTGTCCAGTTCAGTCAAGCTGAATCCTTTGTAATATAAGAACCCAACTACAAAAATCTATTTTTTCGTAAGATTTTTATTGTAAATGAAGGATTTCATTGTAAAAAAATATAGGTGACTTGGGTTTAGAAAGATCCGGAAGCCACTTTCTTGGCTTTTTCTGCTTTTTTCTTCTTATATAGAGAGTAATTGTGCTCGGCGCTCATGTAAGCAGTCTCCAGAAACAGGAAAACGAATTCGCAACATGTCAAGAAAGAGATTCCGCACCAGAGACCCAACTGTCCACCGAAATCAGCTAACAAGTTGACGAACTGAAAGAAAACGGATTAAAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGACTTTTGAGACACTTCT</pcr_primer_p1>
		<pcr_primer_p2>AAAAAGATACAAACCATTTTTAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGACTTTTGAGACACTTCTCAATTTCCCTTTAAAACCTCAGTCCTTTAGTGCCGCTTGTTTTCTCTGAATGCCAAATTCTCCCCCACCTTTCCCTTGAAAGTTTTTTTTTTTTGAAAAAAGAATCATAACAAACTTTTCCTATATTTTAAAAATCTTGTCATTAAATTTGTGTATCTGTGAATAGACCCCTTTTCTATATGCGAGTAGTATCTATTTCTTCTCCTAAAAATGGTTTGTATCTTTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGACTTTTGAGACACTTCTCAATTTCCCTTTAAAACCTCAGTCCTTTAGTGCCGCTTGTTTTCTCTGAATGCCAAATTCTCCCCCACCTTTCCCTTGAAAGWTTTTTTTTTTTGAAAAAAGAATCATAACAAACTTTTCCTATATTTTAAAAATCTTGTCATTAAATTTGTGTATCTGTGAATAGACCCCTTTTCTATATGCGAGTAGTATCTATTTCTTCTCCTAAAAATGGTTTGTATCTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38582</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>621188</contig_pos>
        <strand>+</strand>
        <context>CGTTTCATAC[A/T]TTTTTTTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTATTTCTTCTCCTAAAAATGGTTTGTATCTTTTTTTATCCGTTTCATAC</left_flank>
        <right_flank>TTTTTTTTGTCCAGTTCAGTCAAGCTGAATCCTTTGTAATATAAGAACCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCATCTCAGGATTTCCAGTGCGATGTGACACCACCACCATCGCCAGGAGGAGCCAAGCTGTCACAGACAATGCAATTTTTTGAGATTTGCGCTGCTCTAATTGGAACTTTGGCTCGTTAAGCCTGCACAAAACACTCCATTACTCTATTCATTCCCAGATTGATTCAAAATTGGTTCAATTTTTCGTAACTTTGCTGCAAATATTTTATGCTTCGAGCAAAAAAAACATTATTTTTGACTTTTGAGACACTTCTCAATTTCCCTTTAAAACCTCAGTCCTTTAGTGCCGCTTGTTTTCTCTGAATGCCAAATTCTCCCCCACCTTTCCCTTGAAAGTTTTTTTTTTTTGAAAAAAGAATCATAACAAACTTTTCCTATATTTTAAAAATCTTGTCATTAAATTTGTGTATCTGTGAATAGACCCCTTTTCTATATGCGAGTAGTATCTATTTCTTCTCCTAAAAATGGTTTGTATCTTTTTTTATCCGTTTCATACTTTTTTTTTGTCCAGTTCAGTCAAGCTGAATCCTTTGTAATATAAGAACCCAACTACAAAAATCTATTTTTTCGTAAGATTTTTATTGTAAATGAAGGATTTCATTGTAAAAAAATATAGGTGACTTGGGTTTAGAAAGATCCGGAAGCCACTTTCTTGGCTTTTTCTGCTTTTTTCTTCTTATATAGAGAGTAATTGTGCTCGGCGCTCATGTAAGCAGTCTCCAGAAACAGGAAAACGAATTCGCAACATGTCAAGAAAGAGATTCCGCACCAGAGACCCAACTGTCCACCGAAATCAGCTAACAAGTTGACGAACTGAAAGAAAACGGATTAAAAAAGGCAAGTTAGAAGTTAAGCGCACTCCATAAGCCTCAGATTCGGTGAGCATTTCGAAATTGAGCTGTTCATAGAACACTTCAACCATTGCGCCGTTCTCTCTGAAAATCGTAACTCCAAAAATGTTTCAGAAAAGTTATCAGTTACTTGTAATGCTTATTGC</canonical>
            <polymorphic>AATTCATCTCAGGATTTCCAGTGCGATGTGACACCACCACCATCGCCAGGAGGAGCCAAGCTGTCACAGACAATGCAATTTTTTGAGATTTGCGCTGCTCTAATTGGAACTTTGGCTCGTTAAGCCTGCACAAAACACTCCATTACTCTATTCATTCCCAGATTGATTCAAAATTGGTTCAATTTTTCGTAACTTTGCTGCAAATATTTTATGCTTCGAGCAAAAAAAACATTATTTTTGACTTTTGAGACACTTCTCAATTTCCCTTTAAAACCTCAGTCCTTTAGTGCCGCTTGTTTTCTCTGAATGCCAAATTCTCCCCCACCTTTCCCTTGAAAGTTTTTTTTTTTTGAAAAAAGAATCATAACAAACTTTTCCTATATTTTAAAAATCTTGTCATTAAATTTGTGTATCTGTGAATAGACCCCTTTTCTATATGCGAGTAGTATCTATTTCTTCTCCTAAAAATGGTTTGTATCTTTTTTTATCCGTTTCATACWTTTTTTTTGTCCAGTTCAGTCAAGCTGAATCCTTTGTAATATAAGAACCCAACTACAAAAATCTATTTTTTCGTAAGATTTTTATTGTAAATGAAGGATTTCATTGTAAAAAAATATAGGTGACTTGGGTTTAGAAAGATCCGGAAGCCACTTTCTTGGCTTTTTCTGCTTTTTTCTTCTTATATAGAGAGTAATTGTGCTCGGCGCTCATGTAAGCAGTCTCCAGAAACAGGAAAACGAATTCGCAACATGTCAAGAAAGAGATTCCGCACCAGAGACCCAACTGTCCACCGAAATCAGCTAACAAGTTGACGAACTGAAAGAAAACGGATTAAAAAAGGCAAGTTAGAAGTTAAGCGCACTCCATAAGCCTCAGATTCGGTGAGCATTTCGAAATTGAGCTGTTCATAGAACACTTCAACCATTGCGCCGTTCTCTCTGAAAATCGTAACTCCAAAAATGTTTCAGAAAAGTTATCAGTTACTTGTAATGCTTATTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTGTCATTAAATTTGTGTATCTG</pcr_primer_p1>
		<pcr_primer_p2>CTTTCTAAACCCAAGTCACCTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTTGTCATTAAATTTGTGTATCTGTGAATAGACCCCTTTTCTATATGCGAGTAGTATCTATTTCTTCTCCTAAAAATGGTTTGTATCTTTTTTTATCCGTTTCATACTTTTTTTTTGTCCAGTTCAGTCAAGCTGAATCCTTTGTAATATAAGAACCCAACTACAAAAATCTATTTTTTCGTAAGATTTTTATTGTAAATGAAGGATTTCATTGTAAAAAAATATAGGTGACTTGGGTTTAGAAAG</canonical_amplicon>
		<polymorphic_amplicon>TCTTGTCATTAAATTTGTGTATCTGTGAATAGACCCCTTTTCTATATGCGAGTAGTATCTATTTCTTCTCCTAAAAATGGTTTGTATCTTTTTTTATCCGTTTCATACWTTTTTTTTGTCCAGTTCAGTCAAGCTGAATCCTTTGTAATATAAGAACCCAACTACAAAAATCTATTTTTTCGTAAGATTTTTATTGTAAATGAAGGATTTCATTGTAAAAAAATATAGGTGACTTGGGTTTAGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38583</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>641403</contig_pos>
        <strand>+</strand>
        <context>TCTAAAAACG[C/T]CAAATTTGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTTCACGCATGGATAGATCGGGAGTTGGAGTGTCCATTGTCTAAAAACG</left_flank>
        <right_flank>CAAATTTGCAGTAATTGCGGAAATTCAGAAGACAGAAAGAGAAAATTGTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGAAGCATGAATCAGGGGTCGAAATCCAGAAGGTGTTCTGTATTTTTTGTTCCTGATAAAACACAATTACGAGCGATTGGGAAGTGCGATTGGGAAGCACCAATGTGTGCAATTGCTGTCGCGTCAAACGACACGCTGTTTATTACAATCAGTAGGAAGGACAAAAAAATGTTCTGTGAAACAAGTCAGGGTGTCAGTGGTTTGACATATGAAGACAGAGAGAGGGGAGAAAAAAGATGATAAATGAGGAAGATTTGCAACTTCATGATGTTGCAAAATGACTTGGGAACTTGACAATCTAAAGATTGGCTCTGTTTTGATGCATTCAATTGTCCCCAATAACTTTATGCTCTCGACTACGACAACATGCTCTAATAAACAATTATAGACTCACTTTTGGAGCAATCGGTGACTCGGCGATGGCGAAGGTGTATTCCCTTCAGTAATCCCTTCACGCATGGATAGATCGGGAGTTGGAGTGTCCATTGTCTAAAAACGCCAAATTTGCAGTAATTGCGGAAATTCAGAAGACAGAAAGAGAAAATTGTGTTGGAAAATTCATTGAATCAATTAATTATGATTAATTATTAAGAATTCAAAAAATTTAAAAAAACTTATTTCATGGATGATCAACTTCTCCGGAAATTCGGTAACTAGAAACCAAGCCAAGCAAAAATCCTGTGCTCCGAACCTTCAGCCAAAACGAAATACTATATAAAACTATAAACGCGCTTAGTGCCTTTCACAATTTCTCCACTCTCGGAGGAAAAAAAGCCAAAAAGTTTTTATTACTGCCTCTAAACGCCATGATGACGTTCGAAGAGCCGAAATTTGAAAGCTCGCTGACTTCAACGATCCTCGGCTCAATCGAGACGCCGTCCAACATATTTTTACATGTAAATCCCGCAGTAAGTCTTCCGCTTTCCTTTTTTTCGTCGTCTTCTTCTTCCACTTCTTCTTAGAGCCCAAATTATCCGGAAACAAATTGGCAGAGACCTC</canonical>
            <polymorphic>GTGAAGCATGAATCAGGGGTCGAAATCCAGAAGGTGTTCTGTATTTTTTGTTCCTGATAAAACACAATTACGAGCGATTGGGAAGTGCGATTGGGAAGCACCAATGTGTGCAATTGCTGTCGCGTCAAACGACACGCTGTTTATTACAATCAGTAGGAAGGACAAAAAAATGTTCTGTGAAACAAGTCAGGGTGTCAGTGGTTTGACATATGAAGACAGAGAGAGGGGAGAAAAAAGATGATAAATGAGGAAGATTTGCAACTTCATGATGTTGCAAAATGACTTGGGAACTTGACAATCTAAAGATTGGCTCTGTTTTGATGCATTCAATTGTCCCCAATAACTTTATGCTCTCGACTACGACAACATGCTCTAATAAACAATTATAGACTCACTTTTGGAGCAATCGGTGACTCGGCGATGGCGAAGGTGTATTCCCTTCAGTAATCCCTTCACGCATGGATAGATCGGGAGTTGGAGTGTCCATTGTCTAAAAACGYCAAATTTGCAGTAATTGCGGAAATTCAGAAGACAGAAAGAGAAAATTGTGTTGGAAAATTCATTGAATCAATTAATTATGATTAATTATTAAGAATTCAAAAAATTTAAAAAAACTTATTTCATGGATGATCAACTTCTCCGGAAATTCGGTAACTAGAAACCAAGCCAAGCAAAAATCCTGTGCTCCGAACCTTCAGCCAAAACGAAATACTATATAAAACTATAAACGCGCTTAGTGCCTTTCACAATTTCTCCACTCTCGGAGGAAAAAAAGCCAAAAAGTTTTTATTACTGCCTCTAAACGCCATGATGACGTTCGAAGAGCCGAAATTTGAAAGCTCGCTGACTTCAACGATCCTCGGCTCAATCGAGACGCCGTCCAACATATTTTTACATGTAAATCCCGCAGTAAGTCTTCCGCTTTCCTTTTTTTCGTCGTCTTCTTCTTCCACTTCTTCTTAGAGCCCAAATTATCCGGAAACAAATTGGCAGAGACCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>505 264 222 9</canonical_bands>
                <polymorphic_bands>514 264 222</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGACTCACTTTTGGAGCAATC</pcr_primer_p1>
		<pcr_primer_p2>AAGTTGATCATCCATGAAATAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAGACTCACTTTTGGAGCAATCGGTGACTCGGCGATGGCGAAGGTGTATTCCCTTCAGTAATCCCTTCACGCATGGATAGATCGGGAGTTGGAGTGTCCATTGTCTAAAAACGCCAAATTTGCAGTAATTGCGGAAATTCAGAAGACAGAAAGAGAAAATTGTGTTGGAAAATTCATTGAATCAATTAATTATGATTAATTATTAAGAATTCAAAAAATTTAAAAAAACTTATTTCATGGATGATCAACTT</canonical_amplicon>
		<polymorphic_amplicon>TAGACTCACTTTTGGAGCAATCGGTGACTCGGCGATGGCGAAGGTGTATTCCCTTCAGTAATCCCTTCACGCATGGATAGATCGGGAGTTGGAGTGTCCATTGTCTAAAAACGYCAAATTTGCAGTAATTGCGGAAATTCAGAAGACAGAAAGAGAAAATTGTGTTGGAAAATTCATTGAATCAATTAATTATGATTAATTATTAAGAATTCAAAAAATTTAAAAAAACTTATTTCATGGATGATCAACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38584</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>641642</contig_pos>
        <strand>+</strand>
        <context>CGCGCTTAGT[A/G]CCTTTCACAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAACCTTCAGCCAAAACGAAATACTATATAAAACTATAAACGCGCTTAGT</left_flank>
        <right_flank>CCTTTCACAATTTCTCCACTCTCGGAGGAAAAAAAGCCAAAAAGTTTTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATAAATGAGGAAGATTTGCAACTTCATGATGTTGCAAAATGACTTGGGAACTTGACAATCTAAAGATTGGCTCTGTTTTGATGCATTCAATTGTCCCCAATAACTTTATGCTCTCGACTACGACAACATGCTCTAATAAACAATTATAGACTCACTTTTGGAGCAATCGGTGACTCGGCGATGGCGAAGGTGTATTCCCTTCAGTAATCCCTTCACGCATGGATAGATCGGGAGTTGGAGTGTCCATTGTCTAAAAACGCCAAATTTGCAGTAATTGCGGAAATTCAGAAGACAGAAAGAGAAAATTGTGTTGGAAAATTCATTGAATCAATTAATTATGATTAATTATTAAGAATTCAAAAAATTTAAAAAAACTTATTTCATGGATGATCAACTTCTCCGGAAATTCGGTAACTAGAAACCAAGCCAAGCAAAAATCCTGTGCTCCGAACCTTCAGCCAAAACGAAATACTATATAAAACTATAAACGCGCTTAGTGCCTTTCACAATTTCTCCACTCTCGGAGGAAAAAAAGCCAAAAAGTTTTTATTACTGCCTCTAAACGCCATGATGACGTTCGAAGAGCCGAAATTTGAAAGCTCGCTGACTTCAACGATCCTCGGCTCAATCGAGACGCCGTCCAACATATTTTTACATGTAAATCCCGCAGTAAGTCTTCCGCTTTCCTTTTTTTCGTCGTCTTCTTCTTCCACTTCTTCTTAGAGCCCAAATTATCCGGAAACAAATTGGCAGAGACCTCCCATAGACCCATCTCTTGTTCTTTTTCCAATCTGTGTGAGCTAATTGGTAGTAGAAATGGAGGAATAGGAAAGAAAACTTCCCCAGAAGAATATATAATCAAAAAACGGTATTGAACCGTCTCAAACATTAGAAGGTGTGATTTCAGGAGGAAACTAGTTCTAAACAAGAGGCTGAAACTAATATCACGTTCGAAAGTATTGTTGAAAGCACTGAAGATGACCATGTGGAAAGTGAGCA</canonical>
            <polymorphic>GATAAATGAGGAAGATTTGCAACTTCATGATGTTGCAAAATGACTTGGGAACTTGACAATCTAAAGATTGGCTCTGTTTTGATGCATTCAATTGTCCCCAATAACTTTATGCTCTCGACTACGACAACATGCTCTAATAAACAATTATAGACTCACTTTTGGAGCAATCGGTGACTCGGCGATGGCGAAGGTGTATTCCCTTCAGTAATCCCTTCACGCATGGATAGATCGGGAGTTGGAGTGTCCATTGTCTAAAAACGCCAAATTTGCAGTAATTGCGGAAATTCAGAAGACAGAAAGAGAAAATTGTGTTGGAAAATTCATTGAATCAATTAATTATGATTAATTATTAAGAATTCAAAAAATTTAAAAAAACTTATTTCATGGATGATCAACTTCTCCGGAAATTCGGTAACTAGAAACCAAGCCAAGCAAAAATCCTGTGCTCCGAACCTTCAGCCAAAACGAAATACTATATAAAACTATAAACGCGCTTAGTRCCTTTCACAATTTCTCCACTCTCGGAGGAAAAAAAGCCAAAAAGTTTTTATTACTGCCTCTAAACGCCATGATGACGTTCGAAGAGCCGAAATTTGAAAGCTCGCTGACTTCAACGATCCTCGGCTCAATCGAGACGCCGTCCAACATATTTTTACATGTAAATCCCGCAGTAAGTCTTCCGCTTTCCTTTTTTTCGTCGTCTTCTTCTTCCACTTCTTCTTAGAGCCCAAATTATCCGGAAACAAATTGGCAGAGACCTCCCATAGACCCATCTCTTGTTCTTTTTCCAATCTGTGTGAGCTAATTGGTAGTAGAAATGGAGGAATAGGAAAGAAAACTTCCCCAGAAGAATATATAATCAAAAAACGGTATTGAACCGTCTCAAACATTAGAAGGTGTGATTTCAGGAGGAAACTAGTTCTAAACAAGAGGCTGAAACTAATATCACGTTCGAAAGTATTGTTGAAAGCACTGAAGATGACCATGTGGAAAGTGAGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 266 222 9</canonical_bands>
                <polymorphic_bands>734 266</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>195 155 134 100 84 68 55 47 27 24 23 20 18 17 11 7 7 4 2 2</canonical_bands>
                <polymorphic_bands>195 155 134 100 84 68 62 47 27 24 23 20 18 17 11 7 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGTGTTGGAAAATTCATTG</pcr_primer_p1>
		<pcr_primer_p2>CGTTTAGAGGCAGTAATAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>ATTGTGTTGGAAAATTCATTGAATCAATTAATTATGATTAATTATTAAGAATTCAAAAAATTTAAAAAAACTTATTTCATGGATGATCAACTTCTCCGGAAATTCGGTAACTAGAAACCAAGCCAAGCAAAAATCCTGTGCTCCGAACCTTCAGCCAAAACGAAATACTATATAAAACTATAAACGCGCTTAGTGCCTTTCACAATTTCTCCACTCTCGGAGGAAAAAAAGCCAAAAAGTTTTTATTACTGCCTCTAAACG</canonical_amplicon>
		<polymorphic_amplicon>ATTGTGTTGGAAAATTCATTGAATCAATTAATTATGATTAATTATTAAGAATTCAAAAAATTTAAAAAAACTTATTTCATGGATGATCAACTTCTCCGGAAATTCGGTAACTAGAAACCAAGCCAAGCAAAAATCCTGTGCTCCGAACCTTCAGCCAAAACGAAATACTATATAAAACTATAAACGCGCTTAGTRCCTTTCACAATTTCTCCACTCTCGGAGGAAAAAAAGCCAAAAAGTTTTTATTACTGCCTCTAAACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38585</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>654479</contig_pos>
        <strand>-</strand>
        <context>TTGTTTTTGT[C/G]TTGTACAATG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCATTCCAAAATTTTTCATTGGACATGGTCTTCCCTGAAATTGTTTTTGT</left_flank>
        <right_flank>TTGTACAATGTTTAGTTTCAACTGGTCCCTCTGACTCTCCACAAGGCTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTAAGCTACAGTACAGTAACCCAGAGGCAGCTGCTCTGAAGAGGATTCAAAATAGGGATTCTGAAAAACTACAGAGGACGTTTTTTGTTGCTTTACAGTTGACATTAGCTTGAATGCAACAAACCTGAACTTTGAAAACTATCATTATTCCCATTTTATAAATGCGGTTATTAAGATTCAGGCAAACCCACAATTTTCTTAAATTATTCTTATATGGGGCAAAGTATAATCAGTTCTTTCTGCGGCGGCCTCTTTCGTGCGAGCCATGCTATCGAAAGCAATCAGCTTTGTGTGGACGTGGCATTCCTCTTCATCATCGATAATAATGAGAATTGAGCATCCGAAGTAGCGATGAGTGGGACTGGATTCAATGACCGCTCTGATCTTCAAGAGCTGGCGGATGACAGAAAATTTCTGGGTTTGCGGGATATCGAAGAATATCTTCATTGCATTCCAAAATTTTTCATTGGACATGGTCTTCCCTGAAATTGTTTTTGTGTTGTACAATGTTTAGTTTCAACTGGTCCCTCTGACTCTCCACAAGGCTCTAGGATCATAAATTCGCCAACAAGGTTAGCATCCTAGATTCTCCAAGGGATCTATTAGCCAGCTGTATCTTAGCAGACATTAATTCTTCGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>GTTAAGCTACAGTACAGTAACCCAGAGGCAGCTGCTCTGAAGAGGATTCAAAATAGGGATTCTGAAAAACTACAGAGGACGTTTTTTGTTGCTTTACAGTTGACATTAGCTTGAATGCAACAAACCTGAACTTTGAAAACTATCATTATTCCCATTTTATAAATGCGGTTATTAAGATTCAGGCAAACCCACAATTTTCTTAAATTATTCTTATATGGGGCAAAGTATAATCAGTTCTTTCTGCGGCGGCCTCTTTCGTGCGAGCCATGCTATCGAAAGCAATCAGCTTTGTGTGGACGTGGCATTCCTCTTCATCATCGATAATAATGAGAATTGAGCATCCGAAGTAGCGATGAGTGGGACTGGATTCAATGACCGCTCTGATCTTCAAGAGCTGGCGGATGACAGAAAATTTCTGGGTTTGCGGGATATCGAAGAATATCTTCATTGCATTCCAAAATTTTTCATTGGACATGGTCTTCCCTGAAATTGTTTTTGTSTTGTACAATGTTTAGTTTCAACTGGTCCCTCTGACTCTCCACAAGGCTCTAGGATCATAAATTCGCCAACAAGGTTAGCATCCTAGATTCTCCAAGGGATCTATTAGCCAGCTGTATCTTAGCAGACATTAATTCTTCGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>459 191 141 69 58 41 33 6 2</canonical_bands>
                <polymorphic_bands>459 191 182 69 58 33 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATCGATAATAATGAGAATTGAG</pcr_primer_p1>
		<pcr_primer_p2>AATTTATGATCCTAGAGCCTTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCATCGATAATAATGAGAATTGAGCATCCGAAGTAGCGATGAGTGGGACTGGATTCAATGACCGCTCTGATCTTCAAGAGCTGGCGGATGACAGAAAATTTCTGGGTTTGCGGGATATCGAAGAATATCTTCATTGCATTCCAAAATTTTTCATTGGACATGGTCTTCCCTGAAATTGTTTTTGTGTTGTACAATGTTTAGTTTCAACTGGTCCCTCTGACTCTCCACAAGGCTCTAGGATCATAAATT</canonical_amplicon>
		<polymorphic_amplicon>TCATCGATAATAATGAGAATTGAGCATCCGAAGTAGCGATGAGTGGGACTGGATTCAATGACCGCTCTGATCTTCAAGAGCTGGCGGATGACAGAAAATTTCTGGGTTTGCGGGATATCGAAGAATATCTTCATTGCATTCCAAAATTTTTCATTGGACATGGTCTTCCCTGAAATTGTTTTTGTSTTGTACAATGTTTAGTTTCAACTGGTCCCTCTGACTCTCCACAAGGCTCTAGGATCATAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38586</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>654490</contig_pos>
        <strand>-</strand>
        <context>TTGTACAATG[A/G]TTAGTTTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTCATTGGACATGGTCTTCCCTGAAATTGTTTTTGTGTTGTACAATG</left_flank>
        <right_flank>TTAGTTTCAACTGGTCCCTCTGACTCTCCACAAGGCTCTAGGATCATAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACAGTAACCCAGAGGCAGCTGCTCTGAAGAGGATTCAAAATAGGGATTCTGAAAAACTACAGAGGACGTTTTTTGTTGCTTTACAGTTGACATTAGCTTGAATGCAACAAACCTGAACTTTGAAAACTATCATTATTCCCATTTTATAAATGCGGTTATTAAGATTCAGGCAAACCCACAATTTTCTTAAATTATTCTTATATGGGGCAAAGTATAATCAGTTCTTTCTGCGGCGGCCTCTTTCGTGCGAGCCATGCTATCGAAAGCAATCAGCTTTGTGTGGACGTGGCATTCCTCTTCATCATCGATAATAATGAGAATTGAGCATCCGAAGTAGCGATGAGTGGGACTGGATTCAATGACCGCTCTGATCTTCAAGAGCTGGCGGATGACAGAAAATTTCTGGGTTTGCGGGATATCGAAGAATATCTTCATTGCATTCCAAAATTTTTCATTGGACATGGTCTTCCCTGAAATTGTTTTTGTGTTGTACAATGTTTAGTTTCAACTGGTCCCTCTGACTCTCCACAAGGCTCTAGGATCATAAATTCGCCAACAAGGTTAGCATCCTAGATTCTCCAAGGGATCTATTAGCCAGCTGTATCTTAGCAGACATTAATTCTTCGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>GTACAGTAACCCAGAGGCAGCTGCTCTGAAGAGGATTCAAAATAGGGATTCTGAAAAACTACAGAGGACGTTTTTTGTTGCTTTACAGTTGACATTAGCTTGAATGCAACAAACCTGAACTTTGAAAACTATCATTATTCCCATTTTATAAATGCGGTTATTAAGATTCAGGCAAACCCACAATTTTCTTAAATTATTCTTATATGGGGCAAAGTATAATCAGTTCTTTCTGCGGCGGCCTCTTTCGTGCGAGCCATGCTATCGAAAGCAATCAGCTTTGTGTGGACGTGGCATTCCTCTTCATCATCGATAATAATGAGAATTGAGCATCCGAAGTAGCGATGAGTGGGACTGGATTCAATGACCGCTCTGATCTTCAAGAGCTGGCGGATGACAGAAAATTTCTGGGTTTGCGGGATATCGAAGAATATCTTCATTGCATTCCAAAATTTTTCATTGGACATGGTCTTCCCTGAAATTGTTTTTGTGTTGTACAATGRTTAGTTTCAACTGGTCCCTCTGACTCTCCACAAGGCTCTAGGATCATAAATTCGCCAACAAGGTTAGCATCCTAGATTCTCCAAGGGATCTATTAGCCAGCTGTATCTTAGCAGACATTAATTCTTCGCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATCGATAATAATGAGAATTGAG</pcr_primer_p1>
		<pcr_primer_p2>GCGAATTTATGATCCTAGAGC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCATCGATAATAATGAGAATTGAGCATCCGAAGTAGCGATGAGTGGGACTGGATTCAATGACCGCTCTGATCTTCAAGAGCTGGCGGATGACAGAAAATTTCTGGGTTTGCGGGATATCGAAGAATATCTTCATTGCATTCCAAAATTTTTCATTGGACATGGTCTTCCCTGAAATTGTTTTTGTGTTGTACAATGTTTAGTTTCAACTGGTCCCTCTGACTCTCCACAAGGCTCTAGGATCATAAATTCGC</canonical_amplicon>
		<polymorphic_amplicon>TCATCGATAATAATGAGAATTGAGCATCCGAAGTAGCGATGAGTGGGACTGGATTCAATGACCGCTCTGATCTTCAAGAGCTGGCGGATGACAGAAAATTTCTGGGTTTGCGGGATATCGAAGAATATCTTCATTGCATTCCAAAATTTTTCATTGGACATGGTCTTCCCTGAAATTGTTTTTGTGTTGTACAATGRTTAGTTTCAACTGGTCCCTCTGACTCTCCACAAGGCTCTAGGATCATAAATTCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38587</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>664054</contig_pos>
        <strand>+</strand>
        <context>TTATCGATGA[C/T]GAAGAGGAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTCCCACTCATCGCTACTTCGGATGCTCAATTCTCATTATTATCGATGA</left_flank>
        <right_flank>GAAGAGGAATGCCACGTCCACACAAAGCTGATTGATTTCGCTAGTATGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCGTTACACATCCGCAAAAGTGTCCTTACAACGACGTCCTCGCTCGGAATTCGTCTGTGCGGCGCCCGTTTCACCGGGAAGGACGATCGACAGGAGACTCAATGGACAAAAGGCCTTGGTAAAACTCATCATTAATATTATTACGAAACACCTGTCCTAAACATGAAACTAGGCGAAGAATTAATGTCTGCTAAGATACAGCTGGCTAATAGATCCCTTGGAGAATCTAGGATGCTAACCTTGTTGGCGAATTTATGATCCTAGAGCCTTGTGGAGAGTCAGAGGGACCAGTTGAAACTAAACATTGTACAACACAAAAACAATTTCAGGGAAGACCATGTCCAATGAAAAATTTTGGAATGCAATGAAGATATTCTTCGATATCCCGCAAACCCAGAAATTTTCTGTCATCCGCCAGCTCTTGAAGATCAGAGCGGTCATTGAATCCAGTCCCACTCATCGCTACTTCGGATGCTCAATTCTCATTATTATCGATGATGAAGAGGAATGCCACGTCCACACAAAGCTGATTGATTTCGCTAGTATGGCTCGCTCGGAAGTGGACACCCCACAGTACGAGGATGTCGATGAGGGAGCCATGATGGGAGTCAACAACCTCCTCCAGATTCTCAATGCTTGAGGTAGCTCGTAGATCATTCAAAACTTTTTTTAATCCACTCAGTTTTCTTGTTCACTGGTTGAAATTGTTCCCCACCGCATAACTTTTCATTATGAAACCAATTTTGAATTTGATAGTTGTTCCAAATTCAAAACAAACTTCCCTTTCTTCTAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGT</canonical>
            <polymorphic>AGCGTTACACATCCGCAAAAGTGTCCTTACAACGACGTCCTCGCTCGGAATTCGTCTGTGCGGCGCCCGTTTCACCGGGAAGGACGATCGACAGGAGACTCAATGGACAAAAGGCCTTGGTAAAACTCATCATTAATATTATTACGAAACACCTGTCCTAAACATGAAACTAGGCGAAGAATTAATGTCTGCTAAGATACAGCTGGCTAATAGATCCCTTGGAGAATCTAGGATGCTAACCTTGTTGGCGAATTTATGATCCTAGAGCCTTGTGGAGAGTCAGAGGGACCAGTTGAAACTAAACATTGTACAACACAAAAACAATTTCAGGGAAGACCATGTCCAATGAAAAATTTTGGAATGCAATGAAGATATTCTTCGATATCCCGCAAACCCAGAAATTTTCTGTCATCCGCCAGCTCTTGAAGATCAGAGCGGTCATTGAATCCAGTCCCACTCATCGCTACTTCGGATGCTCAATTCTCATTATTATCGATGAYGAAGAGGAATGCCACGTCCACACAAAGCTGATTGATTTCGCTAGTATGGCTCGCTCGGAAGTGGACACCCCACAGTACGAGGATGTCGATGAGGGAGCCATGATGGGAGTCAACAACCTCCTCCAGATTCTCAATGCTTGAGGTAGCTCGTAGATCATTCAAAACTTTTTTTAATCCACTCAGTTTTCTTGTTCACTGGTTGAAATTGTTCCCCACCGCATAACTTTTCATTATGAAACCAATTTTGAATTTGATAGTTGTTCCAAATTCAAAACAAACTTCCCTTTCTTCTAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACATTGTACAACACAAAAACAA</pcr_primer_p1>
		<pcr_primer_p2>AGCCATACTAGCGAAATCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACATTGTACAACACAAAAACAATTTCAGGGAAGACCATGTCCAATGAAAAATTTTGGAATGCAATGAAGATATTCTTCGATATCCCGCAAACCCAGAAATTTTCTGTCATCCGCCAGCTCTTGAAGATCAGAGCGGTCATTGAATCCAGTCCCACTCATCGCTACTTCGGATGCTCAATTCTCATTATTATCGATGATGAAGAGGAATGCCACGTCCACACAAAGCTGATTGATTTCGCTAGTATGGCT</canonical_amplicon>
		<polymorphic_amplicon>AACATTGTACAACACAAAAACAATTTCAGGGAAGACCATGTCCAATGAAAAATTTTGGAATGCAATGAAGATATTCTTCGATATCCCGCAAACCCAGAAATTTTCTGTCATCCGCCAGCTCTTGAAGATCAGAGCGGTCATTGAATCCAGTCCCACTCATCGCTACTTCGGATGCTCAATTCTCATTATTATCGATGAYGAAGAGGAATGCCACGTCCACACAAAGCTGATTGATTTCGCTAGTATGGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38588</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>664346</contig_pos>
        <strand></strand>
        <context>CCCTTTCTTC[T/A]RATAAATGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATTTTGAATTTGATAGTTGTTCCAAATTCAAAACAAACTTCCCTTTCTTC</left_flank>
        <right_flank>AATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAAACTAAACATTGTACAACACAAAAACAATTTCAGGGAAGACCATGTCCAATGAAAAATTTTGGAATGCAATGAAGATATTCTTCGATATCCCGCAAACCCAGAAATTTTCTGTCATCCGCCAGCTCTTGAAGATCAGAGCGGTCATTGAATCCAGTCCCACTCATCGCTACTTCGGATGCTCAATTCTCATTATTATCGATGATGAAGAGGAATGCCACGTCCACACAAAGCTGATTGATTTCGCTAGTATGGCTCGCTCGGAAGTGGACACCCCACAGTACGAGGATGTCGATGAGGGAGCCATGATGGGAGTCAACAACCTCCTCCAGATTCTCAATGCTTGAGGTAGCTCGTAGATCATTCAAAACTTTTTTTAATCCACTCAGTTTTCTTGTTCACTGGTTGAAATTGTTCCCCACCGCATAACTTTTCATTATGAAACCAATTTTGAATTTGATAGTTGTTCCAAATTCAAAACAAACTTCCCTTTCTTCTAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGA</canonical>
            <polymorphic>TTGAAACTAAACATTGTACAACACAAAAACAATTTCAGGGAAGACCATGTCCAATGAAAAATTTTGGAATGCAATGAAGATATTCTTCGATATCCCGCAAACCCAGAAATTTTCTGTCATCCGCCAGCTCTTGAAGATCAGAGCGGTCATTGAATCCAGTCCCACTCATCGCTACTTCGGATGCTCAATTCTCATTATTATCGATGATGAAGAGGAATGCCACGTCCACACAAAGCTGATTGATTTCGCTAGTATGGCTCGCTCGGAAGTGGACACCCCACAGTACGAGGATGTCGATGAGGGAGCCATGATGGGAGTCAACAACCTCCTCCAGATTCTCAATGCTTGAGGTAGCTCGTAGATCATTCAAAACTTTTTTTAATCCACTCAGTTTTCTTGTTCACTGGTTGAAATTGTTCCCCACCGCATAACTTTTCATTATGAAACCAATTTTGAATTTGATAGTTGTTCCAAATTCAAAACAAACTTCCCTTTCTTCWAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGCTCGTAGATCATTCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CAGAGCATTTCAATGATAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GTAGCTCGTAGATCATTCAAAACTTTTTTTAATCCACTCAGTTTTCTTGTTCACTGGTTGAAATTGTTCCCCACCGCATAACTTTTCATTATGAAACCAATTTTGAATTTGATAGTTGTTCCAAATTCAAAACAAACTTCCCTTTCTTCTAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTG</canonical_amplicon>
		<polymorphic_amplicon>GTAGCTCGTAGATCATTCAAAACTTTTTTTAATCCACTCAGTTTTCTTGTTCACTGGTTGAAATTGTTCCCCACCGCATAACTTTTCATTATGAAACCAATTTTGAATTTGATAGTTGTTCCAAATTCAAAACAAACTTCCCTTTCTTCWAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38589</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>664347</contig_pos>
        <strand></strand>
        <context>CCTTTCTTCW[A/G]ATAAATGATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGAATTTGATAGTTGTTCCAAATTCAAAACAAACTTCCCTTTCTTCT</left_flank>
        <right_flank>ATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAACTAAACATTGTACAACACAAAAACAATTTCAGGGAAGACCATGTCCAATGAAAAATTTTGGAATGCAATGAAGATATTCTTCGATATCCCGCAAACCCAGAAATTTTCTGTCATCCGCCAGCTCTTGAAGATCAGAGCGGTCATTGAATCCAGTCCCACTCATCGCTACTTCGGATGCTCAATTCTCATTATTATCGATGATGAAGAGGAATGCCACGTCCACACAAAGCTGATTGATTTCGCTAGTATGGCTCGCTCGGAAGTGGACACCCCACAGTACGAGGATGTCGATGAGGGAGCCATGATGGGAGTCAACAACCTCCTCCAGATTCTCAATGCTTGAGGTAGCTCGTAGATCATTCAAAACTTTTTTTAATCCACTCAGTTTTCTTGTTCACTGGTTGAAATTGTTCCCCACCGCATAACTTTTCATTATGAAACCAATTTTGAATTTGATAGTTGTTCCAAATTCAAAACAAACTTCCCTTTCTTCTAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAA</canonical>
            <polymorphic>TGAAACTAAACATTGTACAACACAAAAACAATTTCAGGGAAGACCATGTCCAATGAAAAATTTTGGAATGCAATGAAGATATTCTTCGATATCCCGCAAACCCAGAAATTTTCTGTCATCCGCCAGCTCTTGAAGATCAGAGCGGTCATTGAATCCAGTCCCACTCATCGCTACTTCGGATGCTCAATTCTCATTATTATCGATGATGAAGAGGAATGCCACGTCCACACAAAGCTGATTGATTTCGCTAGTATGGCTCGCTCGGAAGTGGACACCCCACAGTACGAGGATGTCGATGAGGGAGCCATGATGGGAGTCAACAACCTCCTCCAGATTCTCAATGCTTGAGGTAGCTCGTAGATCATTCAAAACTTTTTTTAATCCACTCAGTTTTCTTGTTCACTGGTTGAAATTGTTCCCCACCGCATAACTTTTCATTATGAAACCAATTTTGAATTTGATAGTTGTTCCAAATTCAAAACAAACTTCCCTTTCTTCTRATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGCTCGTAGATCATTCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CAGAGCATTTCAATGATAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GTAGCTCGTAGATCATTCAAAACTTTTTTTAATCCACTCAGTTTTCTTGTTCACTGGTTGAAATTGTTCCCCACCGCATAACTTTTCATTATGAAACCAATTTTGAATTTGATAGTTGTTCCAAATTCAAAACAAACTTCCCTTTCTTCTAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTG</canonical_amplicon>
		<polymorphic_amplicon>GTAGCTCGTAGATCATTCAAAACTTTTTTTAATCCACTCAGTTTTCTTGTTCACTGGTTGAAATTGTTCCCCACCGCATAACTTTTCATTATGAAACCAATTTTGAATTTGATAGTTGTTCCAAATTCAAAACAAACTTCCCTTTCTTCTRATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38590</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>664633</contig_pos>
        <strand></strand>
        <context>gcaccccttg[T/A]ggtgacttga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTG</left_flank>
        <right_flank>GGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGATGTCGATGAGGGAGCCATGATGGGAGTCAACAACCTCCTCCAGATTCTCAATGCTTGAGGTAGCTCGTAGATCATTCAAAACTTTTTTTAATCCACTCAGTTTTCTTGTTCACTGGTTGAAATTGTTCCCCACCGCATAACTTTTCATTATGAAACCAATTTTGAATTTGATAGTTGTTCCAAATTCAAAACAAACTTCCCTTTCTTCTAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGAATATATCGCTGCTCTTCCACCTAGAACCTAATCAATCTGGGTGCCTCCACAAAACCATCAAAATCAAACGAAGGAGAGCCGAGAGACCCAAATGAAAAAAAGTGCTTCTAGGGTAGTGGCGGGGGCGCCTTCTCATTTCCATTTAGCTTCCT</canonical>
            <polymorphic>AGGATGTCGATGAGGGAGCCATGATGGGAGTCAACAACCTCCTCCAGATTCTCAATGCTTGAGGTAGCTCGTAGATCATTCAAAACTTTTTTTAATCCACTCAGTTTTCTTGTTCACTGGTTGAAATTGTTCCCCACCGCATAACTTTTCATTATGAAACCAATTTTGAATTTGATAGTTGTTCCAAATTCAAAACAAACTTCCCTTTCTTCTAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGWGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGAATATATCGCTGCTCTTCCACCTAGAACCTAATCAATCTGGGTGCCTCCACAAAACCATCAAAATCAAACGAAGGAGAGCCGAGAGACCCAAATGAAAAAAAGTGCTTCTAGGGTAGTGGCGGGGGCGCCTTCTCATTTCCATTTAGCTTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>120 118 99 99 99 70 63 55 40 39 34 30 24 20 20 17 14 11 9 7 6 3 3</canonical_bands>
                <polymorphic_bands>120 118 99 99 99 70 63 55 40 39 34 30 24 20 20 17 14 12 11 7 6 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGACTAGCACTAGATGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGTTAAGCAGAGGATTACAACAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACT</canonical_amplicon>
		<polymorphic_amplicon>TGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGWGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38591</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>664831</contig_pos>
        <strand>+</strand>
        <context>GTCTGTATGK[G/T]GACAACAGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGG</left_flank>
        <right_flank>GACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTCCCTTTCTTCTAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGAATATATCGCTGCTCTTCCACCTAGAACCTAATCAATCTGGGTGCCTCCACAAAACCATCAAAATCAAACGAAGGAGAGCCGAGAGACCCAAATGAAAAAAAGTGCTTCTAGGGTAGTGGCGGGGGCGCCTTCTCATTTCCATTTAGCTTCCTTTCTCTTTTCTTCCATTTAGAAGAACGGCTCCTGAAGAGGCTTTCCCATCTGCTCTTATTCCGCTCTCTCAGCACTTTTTGACCCAGCGCCTGCCACCATCTTATTCTCATTTTCACTTTCTTTCTGGCTTCTCCCTGTGTGCCCAAACCAAAAAAAGTGCGAACGAAGAGAGGATCTCTTCCGTTTGCGCCCACCCG</canonical>
            <polymorphic>ACTTCCCTTTCTTCTAATAAATGATATAAAACTTCCACTAATGATCATTGAACCTCCTCGAATTTTTCAAAGACGCGTTTTGTTAATATTCTTATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGKGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGAATATATCGCTGCTCTTCCACCTAGAACCTAATCAATCTGGGTGCCTCCACAAAACCATCAAAATCAAACGAAGGAGAGCCGAGAGACCCAAATGAAAAAAAGTGCTTCTAGGGTAGTGGCGGGGGCGCCTTCTCATTTCCATTTAGCTTCCTTTCTCTTTTCTTCCATTTAGAAGAACGGCTCCTGAAGAGGCTTTCCCATCTGCTCTTATTCCGCTCTCTCAGCACTTTTTGACCCAGCGCCTGCCACCATCTTATTCTCATTTTCACTTTCTTTCTGGCTTCTCCCTGTGTGCCCAAACCAAAAAAAGTGCGAACGAAGAGAGGATCTCTTCCGTTTGCGCCCACCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>120 118 108 99 70 63 55 40 39 37 34 30 24 24 22 20 20 18 14 11 9 7 6 4 3 3 2</canonical_bands>
                <polymorphic_bands>217 120 108 70 63 55 40 39 37 34 30 24 24 22 20 20 18 14 11 9 7 6 4 3 3 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>455 174 130 129 65 47</canonical_bands>
                <polymorphic_bands>455 177 174 129 65</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>502 174 130 129 65</canonical_bands>
                <polymorphic_bands>632 174 129 65</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTTGTAATCCTCTGCTTAACT</pcr_primer_p1>
		<pcr_primer_p2>TCTGAGCTATACACTTCTTCTTGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGA</canonical_amplicon>
		<polymorphic_amplicon>CTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGKGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38592</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>664923</contig_pos>
        <strand>+</strand>
        <context>ATATYTCAAA[A/C]ATTTCTCACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAA</left_flank>
        <right_flank>ATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTAT</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGAATATATCGCTGCTCTTCCACCTAGAACCTAATCAATCTGGGTGCCTCCACAAAACCATCAAAATCAAACGAAGGAGAGCCGAGAGACCCAAATGAAAAAAAGTGCTTCTAGGGTAGTGGCGGGGGCGCCTTCTCATTTCCATTTAGCTTCCTTTCTCTTTTCTTCCATTTAGAAGAACGGCTCCTGAAGAGGCTTTCCCATCTGCTCTTATTCCGCTCTCTCAGCACTTTTTGACCCAGCGCCTGCCACCATCTTATTCTCATTTTCACTTTCTTTCTGGCTTCTCCCTGTGTGCCCAAACCAAAAAAAGTGCGAACGAAGAGAGGATCTCTTCCGTTTGCGCCCACCCGTCTTACTCTTCCCCAGATTGATGCCATTTCGAAGACTCTTCTCCCGTTTTCGGTAGTGCCCCTCGCTTTCTCTGACTCTCTTTCTCTTTTTT</canonical>
            <polymorphic>TATCATTGAAATGCTCTGAAAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAMATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGAATATATCGCTGCTCTTCCACCTAGAACCTAATCAATCTGGGTGCCTCCACAAAACCATCAAAATCAAACGAAGGAGAGCCGAGAGACCCAAATGAAAAAAAGTGCTTCTAGGGTAGTGGCGGGGGCGCCTTCTCATTTCCATTTAGCTTCCTTTCTCTTTTCTTCCATTTAGAAGAACGGCTCCTGAAGAGGCTTTCCCATCTGCTCTTATTCCGCTCTCTCAGCACTTTTTGACCCAGCGCCTGCCACCATCTTATTCTCATTTTCACTTTCTTTCTGGCTTCTCCCTGTGTGCCCAAACCAAAAAAAGTGCGAACGAAGAGAGGATCTCTTCCGTTTGCGCCCACCCGTCTTACTCTTCCCCAGATTGATGCCATTTCGAAGACTCTTCTCCCGTTTTCGGTAGTGCCCCTCGCTTTCTCTGACTCTCTTTCTCTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>501 404 59 36</canonical_bands>
                <polymorphic_bands>560 404 36</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>501 186 76 71 62 59 28 9 8</canonical_bands>
                <polymorphic_bands>560 186 76 71 62 28 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTTGTAATCCTCTGCTTAACT</pcr_primer_p1>
		<pcr_primer_p2>TCTGAGCTATACACTTCTTCTTGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGA</canonical_amplicon>
		<polymorphic_amplicon>CTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAMATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38593</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>664942</contig_pos>
        <strand>+</strand>
        <context>CTGGAATAAA[A/G]TGAAGACAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAA</left_flank>
        <right_flank>TGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGAATATATCGCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGAATATATCGCTGCTCTTCCACCTAGAACCTAATCAATCTGGGTGCCTCCACAAAACCATCAAAATCAAACGAAGGAGAGCCGAGAGACCCAAATGAAAAAAAGTGCTTCTAGGGTAGTGGCGGGGGCGCCTTCTCATTTCCATTTAGCTTCCTTTCTCTTTTCTTCCATTTAGAAGAACGGCTCCTGAAGAGGCTTTCCCATCTGCTCTTATTCCGCTCTCTCAGCACTTTTTGACCCAGCGCCTGCCACCATCTTATTCTCATTTTCACTTTCTTTCTGGCTTCTCCCTGTGTGCCCAAACCAAAAAAAGTGCGAACGAAGAGAGGATCTCTTCCGTTTGCGCCCACCCGTCTTACTCTTCCCCAGATTGATGCCATTTCGAAGACTCTTCTCCCGTTTTCGGTAGTGCCCCTCGCTTTCTCTGACTCTCTTTCTCTTTTTTTTTGTCTGAAGTAGAAGCT</canonical>
            <polymorphic>AAAGCCAGAAATTAAAAAATTCCTCAAATTGGAAAAATGTTGGGCACAAATGAGCCCAGGCTTGTGACTAGCACTAGATGAAAAAGTCCTTTTTCTTAATTCTAGAAATAGTGGGTTAATACTACCGTAAAATCTGTATTAATATTGCGCCTCTATTTGAATTGCCCCTCTAATAGACTTGCACCCCTTGTGGTGACTTGAACAATAGACTTGCATGCAATATTAATACAGATTTTACGGTATCTCCCATAAAAGGTGTCACCCAAAACTCACCAGTCCTTGTCGTAGCTGTTGTAATCCTCTGCTTAACTATTATCCGTTTATGTCCTTCCTTGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAARTGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGAATATATCGCTGCTCTTCCACCTAGAACCTAATCAATCTGGGTGCCTCCACAAAACCATCAAAATCAAACGAAGGAGAGCCGAGAGACCCAAATGAAAAAAAGTGCTTCTAGGGTAGTGGCGGGGGCGCCTTCTCATTTCCATTTAGCTTCCTTTCTCTTTTCTTCCATTTAGAAGAACGGCTCCTGAAGAGGCTTTCCCATCTGCTCTTATTCCGCTCTCTCAGCACTTTTTGACCCAGCGCCTGCCACCATCTTATTCTCATTTTCACTTTCTTTCTGGCTTCTCCCTGTGTGCCCAAACCAAAAAAAGTGCGAACGAAGAGAGGATCTCTTCCGTTTGCGCCCACCCGTCTTACTCTTCCCCAGATTGATGCCATTTCGAAGACTCTTCTCCCGTTTTCGGTAGTGCCCCTCGCTTTCTCTGACTCTCTTTCTCTTTTTTTTTGTCTGAAGTAGAAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATGTCCCTACAATTATTACTTC</pcr_primer_p1>
		<pcr_primer_p2>CACCCAGATTGATTAGGTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAAATGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGAATATATCGCTGCTCTTCCACCTAGAACCTAATCAATCTGGGTG</canonical_amplicon>
		<polymorphic_amplicon>TGATGTCCCTACAATTATTACTTCTGATTAGAAACAGTTTTTTCAGTCTGTATGGTGACAACAGTAGAAGAACAAAAAATAATAATAAAATTTAGAAAAGAGTTACAGTACCCATTTTAAAACAAGCATTCGAAATCATATTTCAAAAATTTCTCACTGGAATAAARTGAAGACAACATTTATCAAGAAGAAGTGTATAGCTCAGAATATATCGCTGCTCTTCCACCTAGAACCTAATCAATCTGGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38594</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>665528</contig_pos>
        <strand>+</strand>
        <context>ACGTTGGTTT[C/G]TAAACGAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTTTTTATGAACATTTTCTGACGTACAGCAGGGTGCATCACGTTGGTTT</left_flank>
        <right_flank>TAAACGAAGAGAAAACAAAAACCGGTGGGATAGAGAAAACGACAAAGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACAAAACCATCAAAATCAAACGAAGGAGAGCCGAGAGACCCAAATGAAAAAAAGTGCTTCTAGGGTAGTGGCGGGGGCGCCTTCTCATTTCCATTTAGCTTCCTTTCTCTTTTCTTCCATTTAGAAGAACGGCTCCTGAAGAGGCTTTCCCATCTGCTCTTATTCCGCTCTCTCAGCACTTTTTGACCCAGCGCCTGCCACCATCTTATTCTCATTTTCACTTTCTTTCTGGCTTCTCCCTGTGTGCCCAAACCAAAAAAAGTGCGAACGAAGAGAGGATCTCTTCCGTTTGCGCCCACCCGTCTTACTCTTCCCCAGATTGATGCCATTTCGAAGACTCTTCTCCCGTTTTCGGTAGTGCCCCTCGCTTTCTCTGACTCTCTTTCTCTTTTTTTTTGTCTGAAGTAGAAGCTCGCCACGGACAACCGGGAGAGGACTGCAAAATGTCATTTTTTATGAACATTTTCTGACGTACAGCAGGGTGCATCACGTTGGTTTCTAAACGAAGAGAAAACAAAAACCGGTGGGATAGAGAAAACGACAAAGAATTGCAAATTAGAAATTAACACAAACTGGTGTTAGATACCATCCAAAATATCACCAAAAATTGCGTGTGCAAAGTACAGCCAAAGGGAGAAGAGTTGCAGGAAATTGGGGGAGAAATGATTGAGTGATGACTAGACTAAAACATTTCGGAAATTTGGAATACAATGGGACGGGAGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAACCATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTC</canonical>
            <polymorphic>CACAAAACCATCAAAATCAAACGAAGGAGAGCCGAGAGACCCAAATGAAAAAAAGTGCTTCTAGGGTAGTGGCGGGGGCGCCTTCTCATTTCCATTTAGCTTCCTTTCTCTTTTCTTCCATTTAGAAGAACGGCTCCTGAAGAGGCTTTCCCATCTGCTCTTATTCCGCTCTCTCAGCACTTTTTGACCCAGCGCCTGCCACCATCTTATTCTCATTTTCACTTTCTTTCTGGCTTCTCCCTGTGTGCCCAAACCAAAAAAAGTGCGAACGAAGAGAGGATCTCTTCCGTTTGCGCCCACCCGTCTTACTCTTCCCCAGATTGATGCCATTTCGAAGACTCTTCTCCCGTTTTCGGTAGTGCCCCTCGCTTTCTCTGACTCTCTTTCTCTTTTTTTTTGTCTGAAGTAGAAGCTCGCCACGGACAACCGGGAGAGGACTGCAAAATGTCATTTTTTATGAACATTTTCTGACGTACAGCAGGGTGCATCACGTTGGTTTSTAAACGAAGAGAAAACAAAAACCGGTGGGATAGAGAAAACGACAAAGAATTGCAAATTAGAAATTAACACAAACTGGTGTTAGATACCATCCAAAATATCACCAAAAATTGCGTGTGCAAAGTACAGCCAAAGGGAGAAGAGTTGCAGGAAATTGGGGGAGAAATGATTGAGTGATGACTAGACTAAAACATTTCGGAAATTTGGAATACAATGGGACGGGAGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAACCATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTTCTCTGACTCTCTTTCTCT</pcr_primer_p1>
		<pcr_primer_p2>GCAATTTTTGGTGATATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GCTTTCTCTGACTCTCTTTCTCTTTTTTTTTGTCTGAAGTAGAAGCTCGCCACGGACAACCGGGAGAGGACTGCAAAATGTCATTTTTTATGAACATTTTCTGACGTACAGCAGGGTGCATCACGTTGGTTTCTAAACGAAGAGAAAACAAAAACCGGTGGGATAGAGAAAACGACAAAGAATTGCAAATTAGAAATTAACACAAACTGGTGTTAGATACCATCCAAAATATCACCAAAAATTGC</canonical_amplicon>
		<polymorphic_amplicon>GCTTTCTCTGACTCTCTTTCTCTTTTTTTTTGTCTGAAGTAGAAGCTCGCCACGGACAACCGGGAGAGGACTGCAAAATGTCATTTTTTATGAACATTTTCTGACGTACAGCAGGGTGCATCACGTTGGTTTSTAAACGAAGAGAAAACAAAAACCGGTGGGATAGAGAAAACGACAAAGAATTGCAAATTAGAAATTAACACAAACTGGTGTTAGATACCATCCAAAATATCACCAAAAATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38595</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>665618</contig_pos>
        <strand>+</strand>
        <context>TTAGATACCA[C/T]CCAAAATATC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGACAAAGAATTGCAAATTAGAAATTAACACAAACTGGTGTTAGATACCA</left_flank>
        <right_flank>CCAAAATATCACCAAAAATTGCGTGTGCAAAGTACAGCCAAAGGGAGAAG</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCATTTAGCTTCCTTTCTCTTTTCTTCCATTTAGAAGAACGGCTCCTGAAGAGGCTTTCCCATCTGCTCTTATTCCGCTCTCTCAGCACTTTTTGACCCAGCGCCTGCCACCATCTTATTCTCATTTTCACTTTCTTTCTGGCTTCTCCCTGTGTGCCCAAACCAAAAAAAGTGCGAACGAAGAGAGGATCTCTTCCGTTTGCGCCCACCCGTCTTACTCTTCCCCAGATTGATGCCATTTCGAAGACTCTTCTCCCGTTTTCGGTAGTGCCCCTCGCTTTCTCTGACTCTCTTTCTCTTTTTTTTTGTCTGAAGTAGAAGCTCGCCACGGACAACCGGGAGAGGACTGCAAAATGTCATTTTTTATGAACATTTTCTGACGTACAGCAGGGTGCATCACGTTGGTTTCTAAACGAAGAGAAAACAAAAACCGGTGGGATAGAGAAAACGACAAAGAATTGCAAATTAGAAATTAACACAAACTGGTGTTAGATACCATCCAAAATATCACCAAAAATTGCGTGTGCAAAGTACAGCCAAAGGGAGAAGAGTTGCAGGAAATTGGGGGAGAAATGATTGAGTGATGACTAGACTAAAACATTTCGGAAATTTGGAATACAATGGGACGGGAGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAACCATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCACAAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACC</canonical>
            <polymorphic>TCCATTTAGCTTCCTTTCTCTTTTCTTCCATTTAGAAGAACGGCTCCTGAAGAGGCTTTCCCATCTGCTCTTATTCCGCTCTCTCAGCACTTTTTGACCCAGCGCCTGCCACCATCTTATTCTCATTTTCACTTTCTTTCTGGCTTCTCCCTGTGTGCCCAAACCAAAAAAAGTGCGAACGAAGAGAGGATCTCTTCCGTTTGCGCCCACCCGTCTTACTCTTCCCCAGATTGATGCCATTTCGAAGACTCTTCTCCCGTTTTCGGTAGTGCCCCTCGCTTTCTCTGACTCTCTTTCTCTTTTTTTTTGTCTGAAGTAGAAGCTCGCCACGGACAACCGGGAGAGGACTGCAAAATGTCATTTTTTATGAACATTTTCTGACGTACAGCAGGGTGCATCACGTTGGTTTCTAAACGAAGAGAAAACAAAAACCGGTGGGATAGAGAAAACGACAAAGAATTGCAAATTAGAAATTAACACAAACTGGTGTTAGATACCAYCCAAAATATCACCAAAAATTGCGTGTGCAAAGTACAGCCAAAGGGAGAAGAGTTGCAGGAAATTGGGGGAGAAATGATTGAGTGATGACTAGACTAAAACATTTCGGAAATTTGGAATACAATGGGACGGGAGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAAAGCAACCATTCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCACAAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGATAGAGAAAACGACAAAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCCAGAAAACGAAAACT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>GGATAGAGAAAACGACAAAGAATTGCAAATTAGAAATTAACACAAACTGGTGTTAGATACCATCCAAAATATCACCAAAAATTGCGTGTGCAAAGTACAGCCAAAGGGAGAAGAGTTGCAGGAAATTGGGGGAGAAATGATTGAGTGATGACTAGACTAAAACATTTCGGAAATTTGGAATACAATGGGACGGGAGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGATAGAGAAAACGACAAAGAATTGCAAATTAGAAATTAACACAAACTGGTGTTAGATACCAYCCAAAATATCACCAAAAATTGCGTGTGCAAAGTACAGCCAAAGGGAGAAGAGTTGCAGGAAATTGGGGGAGAAATGATTGAGTGATGACTAGACTAAAACATTTCGGAAATTTGGAATACAATGGGACGGGAGGTTTGATAAAATGAGGAATGCAGTTTTCGTTTTCTGGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38596</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>666302</contig_pos>
        <strand>+</strand>
        <context>AACARTTTAT[C/T]AAAAAAAWCA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTAT</left_flank>
        <right_flank>AAAAAAAACATTGTAAGGAAAACCTACTGAAAACCCAAGTCAGGAATTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCACAAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTATAAAAAAAAACATTGTAAGGAAAACCTACTGAAAACCCAAGTCAGGAATTCAATAGCACTGAAAAAAGAGTATGGACTTGAAGGGGGGATGAATGACTTAGAAACATATATCACAACTTGTTGTCTCGAGAAGAATCTTAAGATGAAAAAATTGAGCTCTAATCATATGGGAGCATAAGGGAAAAAACAACAATATGCCTAGAAGATGGAAAAATCCTATGGCGAGAGGCAAGAGACGAAACTCCAAATATCGAATACAAATTTTTGACGTGGATATATGTTTTTTTTTCTTGAGAGTTAATTATTTTTCTAGATTTTCGGGGTCTTGTGAGTGAGGCGAAGGAGGGAACGTGTATACATAGAAAAAGAAAAAAAAAAGAAAAAGAAAATAATGAAGACCATCTATCAAAATTAATGGTGTGATGGCTGATGTTTCGAGTATGAGTTTTGGCTGACTGGAAGGGTGGACACCGATGCACTGCTACTCGAGTTAGACTCCTGC</canonical>
            <polymorphic>TCTTCATAAATGATACATTATCACTTCTAGGAAAAAATTTCAGAACTACTTTCTCAACCAACTTCTGAAAGGACAAAGTATTTTCACTTGATACACCAACTAAGTAGGAAGACTAAGTATGAACGACCGAAAGCTAATCAGTTAGTCTACAGTTCTCCCCACCCCCATATTACTGGTTGATAGGGAAAAACGAGGAGACAGAGATTATGAACAAAAGATACGTGTCCACAAAAAAATTTCTGATGATCGATAAGGTATCGGTTCAAAAGACGCGATTTGAAGTGTAATAGGTTCTGTGTTCAAATCATCATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTATYAAAAAAAACATTGTAAGGAAAACCTACTGAAAACCCAAGTCAGGAATTCAATAGCACTGAAAAAAGAGTATGGACTTGAAGGGGGGATGAATGACTTAGAAACATATATCACAACTTGTTGTCTCGAGAAGAATCTTAAGATGAAAAAATTGAGCTCTAATCATATGGGAGCATAAGGGAAAAAACAACAATATGCCTAGAAGATGGAAAAATCCTATGGCGAGAGGCAAGAGACGAAACTCCAAATATCGAATACAAATTTTTGACGTGGATATATGTTTTTTTTTCTTGAGAGTTAATTATTTTTCTAGATTTTCGGGGTCTTGTGAGTGAGGCGAAGGAGGGAACGTGTATACATAGAAAAAGAAAAAAAAAAGAAAAAGAAAATAATGAAGACCATCTATCAAAATTAATGGTGTGATGGCTGATGTTTCGAGTATGAGTTTTGGCTGACTGGAAGGGTGGACACCGATGCACTGCTACTCGAGTTAGACTCCTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCACCTTTTTACAATGGAAC</pcr_primer_p1>
		<pcr_primer_p2>CAGTGCTATTGAATTCCTGACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTATAAAAAAAAACATTGTAAGGAAAACCTACTGAAAACCCAAGTCAGGAATTCAATAGCACTG</canonical_amplicon>
		<polymorphic_amplicon>ATTCACCTTTTTACAATGGAACGAGAAAAGGTGAACAGTAATGGGGAAGACATTGCTTTAAAAGTGCGATTTCAAATTTTTTGGAATGTACTTTTTAAAAGTCATCAGTTTGAAAACGACACAAGGTCGGAACCCTGTGGTAGGATTAGTTTAATTTTAAACAGAAATTCGAACCAACGGAACAGTTTATYAAAAAAAACATTGTAAGGAAAACCTACTGAAAACCCAAGTCAGGAATTCAATAGCACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38597</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>692256</contig_pos>
        <strand>+</strand>
        <context>GAATCTTCTG[C/G]ASATCCGTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCAGATGGCGAGTTTCGCCACACTCGATGTCATACATTTGGAATCTTCTG</left_flank>
        <right_flank>ACATCCGTCAATATCCACTTGGCAAACTTGAACTTGAGTTTTGTCGAGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCACGTAGGCAACACCACGAAGGCATTGAGGTTGAGACATTCCCATTCCAGTACCAGAAGAGCAGCAGAGATGGTGTTGAGGATTTGTGGATGGCATACAGCTATATCCCTGTGGACACTTGTTGCTTCCAGCTGGGCACGCCAATGGTCTTCCTCCGTACTCAAACACCGAAGAACCTGCTGGACATCTGATCACATTGCTGTTCGTGCAGCAGACAGCTTGACCTGTAGAAGAAAACTCGCATTGGTATCCCGATGGGCAAGTGTTGTGCACAAAGTTGCACTCTTGGAATTTGTTGTCTAGACCACGGAACGGTGTCTCGCCGTTTGCACACATTGCTTCTTTGTTGTTGTTGTGGTTGTTGTTTGTGGCTGATCCTTGATTGACTCCACGGTTATTGTTGTTCGTTGGACGGTTGTTCGGGCTTGGTGGCTGATATTTTTGGCAGCAGATGGCGAGTTTCGCCACACTCGATGTCATACATTTGGAATCTTCTGGACATCCGTCAATATCCACTTGGCAAACTTGAACTTGAGTTTTGTCGAGGAAAATTGGAACGTAACCCTTTTGACTACACTTCGGTGGAGTGGTTCTGCAGCACGATCCTTGCTTGAATCCGACATCTCTGAAGCATATATGGTTTTTTGGGCAGTCGCCAATCTGGTTGACTGTGCAGGATTGTCCACTGCTGAGGAGTTGTGGTGGGCATGGAGAAATATTGGAGAGAAGCTCAGCAAAACTGTCTGGCTCGAAAGGTCTTCTCGTTTTATGAGCTGGTGGTGGTGGTAGCGGGCGGACTGGTCGTTGGGAAGAAGGAAGTGGTCCTGAGCAGCACATGTGGAATCCTGGAGCGGTTGCAGATTCGAGGCATTGGAAGTCTTCTGGACAATCGTCTCGTTCGATGCTACAGGCAACGACTGAATTGGTTCCAGGGATGTTATATGGAATACGGTTGTTTGGACAAGCAGTTACCGCTTTACAGCAGATTGGCTGATTTG</canonical>
            <polymorphic>TTCACGTAGGCAACACCACGAAGGCATTGAGGTTGAGACATTCCCATTCCAGTACCAGAAGAGCAGCAGAGATGGTGTTGAGGATTTGTGGATGGCATACAGCTATATCCCTGTGGACACTTGTTGCTTCCAGCTGGGCACGCCAATGGTCTTCCTCCGTACTCAAACACCGAAGAACCTGCTGGACATCTGATCACATTGCTGTTCGTGCAGCAGACAGCTTGACCTGTAGAAGAAAACTCGCATTGGTATCCCGATGGGCAAGTGTTGTGCACAAAGTTGCACTCTTGGAATTTGTTGTCTAGACCACGGAACGGTGTCTCGCCGTTTGCACACATTGCTTCTTTGTTGTTGTTGTGGTTGTTGTTTGTGGCTGATCCTTGATTGACTCCACGGTTATTGTTGTTCGTTGGACGGTTGTTCGGGCTTGGTGGCTGATATTTTTGGCAGCAGATGGCGAGTTTCGCCACACTCGATGTCATACATTTGGAATCTTCTGSACATCCGTCAATATCCACTTGGCAAACTTGAACTTGAGTTTTGTCGAGGAAAATTGGAACGTAACCCTTTTGACTACACTTCGGTGGAGTGGTTCTGCAGCACGATCCTTGCTTGAATCCGACATCTCTGAAGCATATATGGTTTTTTGGGCAGTCGCCAATCTGGTTGACTGTGCAGGATTGTCCACTGCTGAGGAGTTGTGGTGGGCATGGAGAAATATTGGAGAGAAGCTCAGCAAAACTGTCTGGCTCGAAAGGTCTTCTCGTTTTATGAGCTGGTGGTGGTGGTAGCGGGCGGACTGGTCGTTGGGAAGAAGGAAGTGGTCCTGAGCAGCACATGTGGAATCCTGGAGCGGTTGCAGATTCGAGGCATTGGAAGTCTTCTGGACAATCGTCTCGTTCGATGCTACAGGCAACGACTGAATTGGTTCCAGGGATGTTATATGGAATACGGTTGTTTGGACAAGCAGTTACCGCTTTACAGCAGATTGGCTGATTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNNGTC</site>
                <isoschizomers>
                    <enzyme>BoxI</enzyme>
                    <enzyme>BstPAI</enzyme>
                    <enzyme>PshAI</enzyme>
                </isoschizomers>
                <canonical_bands>504 387 109</canonical_bands>
                <polymorphic_bands>891 109</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>329 253 195 116 58 49</canonical_bands>
                <polymorphic_bands>524 253 116 58 49</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACACATTGCTTCTTTGTTGTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTGTAGTCAAAAGGGTTACG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACACATTGCTTCTTTGTTGTTGTTGTGGTTGTTGTTTGTGGCTGATCCTTGATTGACTCCACGGTTATTGTTGTTCGTTGGACGGTTGTTCGGGCTTGGTGGCTGATATTTTTGGCAGCAGATGGCGAGTTTCGCCACACTCGATGTCATACATTTGGAATCTTCTGGACATCCGTCAATATCCACTTGGCAAACTTGAACTTGAGTTTTGTCGAGGAAAATTGGAACGTAACCCTTTTGACTACACTT</canonical_amplicon>
		<polymorphic_amplicon>ACACATTGCTTCTTTGTTGTTGTTGTGGTTGTTGTTTGTGGCTGATCCTTGATTGACTCCACGGTTATTGTTGTTCGTTGGACGGTTGTTCGGGCTTGGTGGCTGATATTTTTGGCAGCAGATGGCGAGTTTCGCCACACTCGATGTCATACATTTGGAATCTTCTGSACATCCGTCAATATCCACTTGGCAAACTTGAACTTGAGTTTTGTCGAGGAAAATTGGAACGTAACCCTTTTGACTACACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38598</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>692258</contig_pos>
        <strand>+</strand>
        <context>ATCTTCTGSA[C/G]ATCCGTCAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGATGGCGAGTTTCGCCACACTCGATGTCATACATTTGGAATCTTCTGGA</left_flank>
        <right_flank>ATCCGTCAATATCCACTTGGCAAACTTGAACTTGAGTTTTGTCGAGGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACGTAGGCAACACCACGAAGGCATTGAGGTTGAGACATTCCCATTCCAGTACCAGAAGAGCAGCAGAGATGGTGTTGAGGATTTGTGGATGGCATACAGCTATATCCCTGTGGACACTTGTTGCTTCCAGCTGGGCACGCCAATGGTCTTCCTCCGTACTCAAACACCGAAGAACCTGCTGGACATCTGATCACATTGCTGTTCGTGCAGCAGACAGCTTGACCTGTAGAAGAAAACTCGCATTGGTATCCCGATGGGCAAGTGTTGTGCACAAAGTTGCACTCTTGGAATTTGTTGTCTAGACCACGGAACGGTGTCTCGCCGTTTGCACACATTGCTTCTTTGTTGTTGTTGTGGTTGTTGTTTGTGGCTGATCCTTGATTGACTCCACGGTTATTGTTGTTCGTTGGACGGTTGTTCGGGCTTGGTGGCTGATATTTTTGGCAGCAGATGGCGAGTTTCGCCACACTCGATGTCATACATTTGGAATCTTCTGGACATCCGTCAATATCCACTTGGCAAACTTGAACTTGAGTTTTGTCGAGGAAAATTGGAACGTAACCCTTTTGACTACACTTCGGTGGAGTGGTTCTGCAGCACGATCCTTGCTTGAATCCGACATCTCTGAAGCATATATGGTTTTTTGGGCAGTCGCCAATCTGGTTGACTGTGCAGGATTGTCCACTGCTGAGGAGTTGTGGTGGGCATGGAGAAATATTGGAGAGAAGCTCAGCAAAACTGTCTGGCTCGAAAGGTCTTCTCGTTTTATGAGCTGGTGGTGGTGGTAGCGGGCGGACTGGTCGTTGGGAAGAAGGAAGTGGTCCTGAGCAGCACATGTGGAATCCTGGAGCGGTTGCAGATTCGAGGCATTGGAAGTCTTCTGGACAATCGTCTCGTTCGATGCTACAGGCAACGACTGAATTGGTTCCAGGGATGTTATATGGAATACGGTTGTTTGGACAAGCAGTTACCGCTTTACAGCAGATTGGCTGATTTGTG</canonical>
            <polymorphic>CACGTAGGCAACACCACGAAGGCATTGAGGTTGAGACATTCCCATTCCAGTACCAGAAGAGCAGCAGAGATGGTGTTGAGGATTTGTGGATGGCATACAGCTATATCCCTGTGGACACTTGTTGCTTCCAGCTGGGCACGCCAATGGTCTTCCTCCGTACTCAAACACCGAAGAACCTGCTGGACATCTGATCACATTGCTGTTCGTGCAGCAGACAGCTTGACCTGTAGAAGAAAACTCGCATTGGTATCCCGATGGGCAAGTGTTGTGCACAAAGTTGCACTCTTGGAATTTGTTGTCTAGACCACGGAACGGTGTCTCGCCGTTTGCACACATTGCTTCTTTGTTGTTGTTGTGGTTGTTGTTTGTGGCTGATCCTTGATTGACTCCACGGTTATTGTTGTTCGTTGGACGGTTGTTCGGGCTTGGTGGCTGATATTTTTGGCAGCAGATGGCGAGTTTCGCCACACTCGATGTCATACATTTGGAATCTTCTGGASATCCGTCAATATCCACTTGGCAAACTTGAACTTGAGTTTTGTCGAGGAAAATTGGAACGTAACCCTTTTGACTACACTTCGGTGGAGTGGTTCTGCAGCACGATCCTTGCTTGAATCCGACATCTCTGAAGCATATATGGTTTTTTGGGCAGTCGCCAATCTGGTTGACTGTGCAGGATTGTCCACTGCTGAGGAGTTGTGGTGGGCATGGAGAAATATTGGAGAGAAGCTCAGCAAAACTGTCTGGCTCGAAAGGTCTTCTCGTTTTATGAGCTGGTGGTGGTGGTAGCGGGCGGACTGGTCGTTGGGAAGAAGGAAGTGGTCCTGAGCAGCACATGTGGAATCCTGGAGCGGTTGCAGATTCGAGGCATTGGAAGTCTTCTGGACAATCGTCTCGTTCGATGCTACAGGCAACGACTGAATTGGTTCCAGGGATGTTATATGGAATACGGTTGTTTGGACAAGCAGTTACCGCTTTACAGCAGATTGGCTGATTTGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNNGTC</site>
                <isoschizomers>
                    <enzyme>BoxI</enzyme>
                    <enzyme>BstPAI</enzyme>
                    <enzyme>PshAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 387 111</canonical_bands>
                <polymorphic_bands>889 111</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACACATTGCTTCTTTGTTGTT</pcr_primer_p1>
		<pcr_primer_p2>AAGTGTAGTCAAAAGGGTTACG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACACATTGCTTCTTTGTTGTTGTTGTGGTTGTTGTTTGTGGCTGATCCTTGATTGACTCCACGGTTATTGTTGTTCGTTGGACGGTTGTTCGGGCTTGGTGGCTGATATTTTTGGCAGCAGATGGCGAGTTTCGCCACACTCGATGTCATACATTTGGAATCTTCTGGACATCCGTCAATATCCACTTGGCAAACTTGAACTTGAGTTTTGTCGAGGAAAATTGGAACGTAACCCTTTTGACTACACTT</canonical_amplicon>
		<polymorphic_amplicon>ACACATTGCTTCTTTGTTGTTGTTGTGGTTGTTGTTTGTGGCTGATCCTTGATTGACTCCACGGTTATTGTTGTTCGTTGGACGGTTGTTCGGGCTTGGTGGCTGATATTTTTGGCAGCAGATGGCGAGTTTCGCCACACTCGATGTCATACATTTGGAATCTTCTGGASATCCGTCAATATCCACTTGGCAAACTTGAACTTGAGTTTTGTCGAGGAAAATTGGAACGTAACCCTTTTGACTACACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38599</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>695256</contig_pos>
        <strand>+</strand>
        <context>GGATTCAGGA[C/T]TTCCTGGATC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTCGAAAACTCTTACCCTTCCAAATTGCAGTATAAATAGGATTCAGGA</left_flank>
        <right_flank>TTCCTGGATCTGGCTTTTTGATGTTGGAAGTTGGATCACATTCTAATCCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTAACGCGTCCTTCGCCGCAATTAATCTTGTCATGGGAACTTTTGGCGATTGGAGTTGGGTTCTGACAACAGTAGGAAGAGCCGGTGCGCTCGTAAAATTGACAACTGTATCCTGAAATGAGCATGGGGATAAGAATACCAAGCCATAGTGATAAACAAACCATCTGGACAGCTGCTGATGGAAGGATTGCAGGTAACCGGTGCAGACAGAATTGTTAATGGGATTCCCTCTCCACACAAGTCATCTAAAATTTCAATAATAAAAAACAATGTCTATATATCAAGGTCTCGCCTGGGGCTTGGAAAAACGGCTGAGAGAAAATATCATCTATCGGATCGTCCGCTTGCATTAACGAGTCGCATTCTCCTGTTTCACTATTGAATATTTTACCACTAGCGCATTTTCGTTTAGAGAAAGATCTGAAAATCAAAATTTCAGAATTTGAAAATTTTCGAAAACTCTTACCCTTCCAAATTGCAGTATAAATAGGATTCAGGATTTCCTGGATCTGGCTTTTTGATGTTGGAAGTTGGATCACATTCTAATCCTGCTCGGACTAGAAGGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATAACTCACACTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAACATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTAAAAAAGAAAAAAAACAATTGGAAAACTAAAACGTGAATGGGATATGGACCCCACACTAAGACGATATATATGACTGATGGGGTGGAGGTGGCCGAACACGGGGCTTCAAGTAGGCACATGCCCTGCCCTCCTTCTTCAGAACACGAAACCGGCTCCGTGTACCGCCCCATCGCTCCCCTCCGCGCTACGGTCAAGCCACCGGAGCTGCTGGTGTGGCTGCTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGAC</canonical>
            <polymorphic>GTAACGCGTCCTTCGCCGCAATTAATCTTGTCATGGGAACTTTTGGCGATTGGAGTTGGGTTCTGACAACAGTAGGAAGAGCCGGTGCGCTCGTAAAATTGACAACTGTATCCTGAAATGAGCATGGGGATAAGAATACCAAGCCATAGTGATAAACAAACCATCTGGACAGCTGCTGATGGAAGGATTGCAGGTAACCGGTGCAGACAGAATTGTTAATGGGATTCCCTCTCCACACAAGTCATCTAAAATTTCAATAATAAAAAACAATGTCTATATATCAAGGTCTCGCCTGGGGCTTGGAAAAACGGCTGAGAGAAAATATCATCTATCGGATCGTCCGCTTGCATTAACGAGTCGCATTCTCCTGTTTCACTATTGAATATTTTACCACTAGCGCATTTTCGTTTAGAGAAAGATCTGAAAATCAAAATTTCAGAATTTGAAAATTTTCGAAAACTCTTACCCTTCCAAATTGCAGTATAAATAGGATTCAGGAYTTCCTGGATCTGGCTTTTTGATGTTGGAAGTTGGATCACATTCTAATCCTGCTCGGACTAGAAGGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATAACTCACACTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAACATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTAAAAAAGAAAAAAAACAATTGGAAAACTAAAACGTGAATGGGATATGGACCCCACACTAAGACGATATATATGACTGATGGGGTGGAGGTGGCCGAACACGGGGCTTCAAGTAGGCACATGCCCTGCCCTCCTTCTTCAGAACACGAAACCGGCTCCGTGTACCGCCCCATCGCTCCCCTCCGCGCTACGGTCAAGCCACCGGAGCTGCTGGTGTGGCTGCTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTTTACCACTAGCGCATTT</pcr_primer_p1>
		<pcr_primer_p2>TATTTATCACATCTTGCTGTCCT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATATTTTACCACTAGCGCATTTTCGTTTAGAGAAAGATCTGAAAATCAAAATTTCAGAATTTGAAAATTTTCGAAAACTCTTACCCTTCCAAATTGCAGTATAAATAGGATTCAGGATTTCCTGGATCTGGCTTTTTGATGTTGGAAGTTGGATCACATTCTAATCCTGCTCGGACTAGAAGGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATA</canonical_amplicon>
		<polymorphic_amplicon>ATATTTTACCACTAGCGCATTTTCGTTTAGAGAAAGATCTGAAAATCAAAATTTCAGAATTTGAAAATTTTCGAAAACTCTTACCCTTCCAAATTGCAGTATAAATAGGATTCAGGAYTTCCTGGATCTGGCTTTTTGATGTTGGAAGTTGGATCACATTCTAATCCTGCTCGGACTAGAAGGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38600</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>695483</contig_pos>
        <strand>+</strand>
        <context>CCACTTGAGT[C/T]AAAAAGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGGAAACATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGT</left_flank>
        <right_flank>AAAAAGAAAAAAAACAATTGGAAAACTAAAACGTGAATGGGATATGGACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTCTCCACACAAGTCATCTAAAATTTCAATAATAAAAAACAATGTCTATATATCAAGGTCTCGCCTGGGGCTTGGAAAAACGGCTGAGAGAAAATATCATCTATCGGATCGTCCGCTTGCATTAACGAGTCGCATTCTCCTGTTTCACTATTGAATATTTTACCACTAGCGCATTTTCGTTTAGAGAAAGATCTGAAAATCAAAATTTCAGAATTTGAAAATTTTCGAAAACTCTTACCCTTCCAAATTGCAGTATAAATAGGATTCAGGATTTCCTGGATCTGGCTTTTTGATGTTGGAAGTTGGATCACATTCTAATCCTGCTCGGACTAGAAGGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATAACTCACACTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAACATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTAAAAAAGAAAAAAAACAATTGGAAAACTAAAACGTGAATGGGATATGGACCCCACACTAAGACGATATATATGACTGATGGGGTGGAGGTGGCCGAACACGGGGCTTCAAGTAGGCACATGCCCTGCCCTCCTTCTTCAGAACACGAAACCGGCTCCGTGTACCGCCCCATCGCTCCCCTCCGCGCTACGGTCAAGCCACCGGAGCTGCTGGTGTGGCTGCTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGGCGCCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATCGGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCA</canonical>
            <polymorphic>CCTCTCCACACAAGTCATCTAAAATTTCAATAATAAAAAACAATGTCTATATATCAAGGTCTCGCCTGGGGCTTGGAAAAACGGCTGAGAGAAAATATCATCTATCGGATCGTCCGCTTGCATTAACGAGTCGCATTCTCCTGTTTCACTATTGAATATTTTACCACTAGCGCATTTTCGTTTAGAGAAAGATCTGAAAATCAAAATTTCAGAATTTGAAAATTTTCGAAAACTCTTACCCTTCCAAATTGCAGTATAAATAGGATTCAGGATTTCCTGGATCTGGCTTTTTGATGTTGGAAGTTGGATCACATTCTAATCCTGCTCGGACTAGAAGGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATAACTCACACTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAACATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTYAAAAAGAAAAAAAACAATTGGAAAACTAAAACGTGAATGGGATATGGACCCCACACTAAGACGATATATATGACTGATGGGGTGGAGGTGGCCGAACACGGGGCTTCAAGTAGGCACATGCCCTGCCCTCCTTCTTCAGAACACGAAACCGGCTCCGTGTACCGCCCCATCGCTCCCCTCCGCGCTACGGTCAAGCCACCGGAGCTGCTGGTGTGGCTGCTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGGCGCCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATCGGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGACTAGAAGGATTACTGTGGA</pcr_primer_p1>
		<pcr_primer_p2>TCAGTCATATATATCGTCTTAGTGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGACTAGAAGGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATAACTCACACTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAACATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTAAAAAAGAAAAAAAACAATTGGAAAACTAAAACGTGAATGGGATATGGACCCCACACTAAGACGATATATATGACTGA</canonical_amplicon>
		<polymorphic_amplicon>GGACTAGAAGGATTACTGTGGATATCTAAAAATTTAGAGAATGAATAATAGGACAGCAAGATGTGATAAATAACTCACACTGAAGAGGTGCCTTATAGTACACCAACGCATTTTTCTGAAAAAAGGAAACATTTGAGAAGAAACACTGAATAGAATTTCACGCCACTTGAGTYAAAAAGAAAAAAAACAATTGGAAAACTAAAACGTGAATGGGATATGGACCCCACACTAAGACGATATATATGACTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38601</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>696082</contig_pos>
        <strand>+</strand>
        <context>ATGAAATAGG[A/G]TKGGAAAGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGG</left_flank>
        <right_flank>TTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGGCTTCAAGTAGGCACATGCCCTGCCCTCCTTCTTCAGAACACGAAACCGGCTCCGTGTACCGCCCCATCGCTCCCCTCCGCGCTACGGTCAAGCCACCGGAGCTGCTGGTGTGGCTGCTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGGCGCCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATCGGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCAATGAACCAGGGCACGGAAGGAAAGACGACGCAACAGGAACAGGAAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGT</canonical>
            <polymorphic>GGGGCTTCAAGTAGGCACATGCCCTGCCCTCCTTCTTCAGAACACGAAACCGGCTCCGTGTACCGCCCCATCGCTCCCCTCCGCGCTACGGTCAAGCCACCGGAGCTGCTGGTGTGGCTGCTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGGCGCCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATCGGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCAATGAACCAGGGCACGGAAGGAAAGACGACGCAACAGGAACAGGAAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGRTTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTTTTCGAAATGTGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATAATTATCTGCTGAAACGCTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTAT</canonical_amplicon>
		<polymorphic_amplicon>AAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGRTTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38602</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>696084</contig_pos>
        <strand>+</strand>
        <context>GAAATAGGRT[G/T]GGAAAGAGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGAT</left_flank>
        <right_flank>GGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTTCAAGTAGGCACATGCCCTGCCCTCCTTCTTCAGAACACGAAACCGGCTCCGTGTACCGCCCCATCGCTCCCCTCCGCGCTACGGTCAAGCCACCGGAGCTGCTGGTGTGGCTGCTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGGCGCCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATCGGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCAATGAACCAGGGCACGGAAGGAAAGACGACGCAACAGGAACAGGAAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTAT</canonical>
            <polymorphic>GGCTTCAAGTAGGCACATGCCCTGCCCTCCTTCTTCAGAACACGAAACCGGCTCCGTGTACCGCCCCATCGCTCCCCTCCGCGCTACGGTCAAGCCACCGGAGCTGCTGGTGTGGCTGCTACAGGCAAACAGCTCAACGCGTGTCTGCCGCGCGGAGAGTGAGCAACATGACCCAGGATCCTCCACCTGGTGTCACACTATTTCGAGACGGCGCCCGCCTGTTTTTAATTGGCGCTATGCCTTGAGGAGGAAGCATTGTTCGGCACCTGTGTGTGTGTCGTTTGTTTTTCGATTTTTCGGTTCGCTTCTGGGGGGCACTAAAACTGATTGGGGGAAGAAAAACTATGGGAAGAAGAATCGGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCAATGAACCAGGGCACGGAAGGAAAGACGACGCAACAGGAACAGGAAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATKGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTTTTTCGAAATGTGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATAATTATCTGCTGAAACGCTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTAT</canonical_amplicon>
		<polymorphic_amplicon>AAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATKGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38603</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>696409</contig_pos>
        <strand></strand>
        <context>tgagctcaat[G/T]acctaggttc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAAT</left_flank>
        <right_flank>ACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTGGGGGAAGAAAAACTATGGGAAGAAGAATCGGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCAATGAACCAGGGCACGGAAGGAAAGACGACGCAACAGGAACAGGAAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTGTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAA</canonical>
            <polymorphic>GATTGGGGGAAGAAAAACTATGGGAAGAAGAATCGGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCAATGAACCAGGGCACGGAAGGAAAGACGACGCAACAGGAACAGGAAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATKACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTGTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATTGCTCTACAGTAAATTATCC</pcr_primer_p1>
		<pcr_primer_p2>TGTTTTCTCAAGTGTTTTCAGAT</pcr_primer_p2>
		<pcr_amplicon_size>326</pcr_amplicon_size>
		<canonical_amplicon>TGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACA</canonical_amplicon>
		<polymorphic_amplicon>TGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATKACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38604</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>696443</contig_pos>
        <strand></strand>
        <context>caaaaagcgg[C/T]caattgataa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGG</left_flank>
        <right_flank>CAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCAATGAACCAGGGCACGGAAGGAAAGACGACGCAACAGGAACAGGAAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTGTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAACAAAATGCGCATTTTTCTAAGGGGACGTGATTGT</canonical>
            <polymorphic>GGAAGCCGCGCCAAATATGCTCAAAGCGTTGGGGAGCTCAATGAACCAGGGCACGGAAGGAAAGACGACGCAACAGGAACAGGAAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGYCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTGTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAACAAAATGCGCATTTTTCTAAGGGGACGTGATTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>501 491 8</canonical_bands>
                <polymorphic_bands>992 8</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>217 200 153 144 94 79 40 37 31 5</canonical_bands>
                <polymorphic_bands>217 200 153 144 134 79 37 31 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>501 491 8</canonical_bands>
                <polymorphic_bands>992 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATTGCTCTACAGTAAATTATCC</pcr_primer_p1>
		<pcr_primer_p2>TGTTTTCTCAAGTGTTTTCAGAT</pcr_primer_p2>
		<pcr_amplicon_size>326</pcr_amplicon_size>
		<canonical_amplicon>TGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACA</canonical_amplicon>
		<polymorphic_amplicon>TGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGYCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38605</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>696494</contig_pos>
        <strand></strand>
        <context>tcagttcgcc[A/G]atttccaaca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCC</left_flank>
        <right_flank>ATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGT</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACGGAAGGAAAGACGACGCAACAGGAACAGGAAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTGTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAACAAAATGCGCATTTTTCTAAGGGGACGTGATTGTTAGGAATGTTTCAAAGATCAGAGCAAATCAGGGGATCGGATTCATTTTTTG</canonical>
            <polymorphic>CACGGAAGGAAAGACGACGCAACAGGAACAGGAAGTTTTTCGAAATGTGATTTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCRATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTGTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAACAAAATGCGCATTTTTCTAAGGGGACGTGATTGTTAGGAATGTTTCAAAGATCAGAGCAAATCAGGGGATCGGATTCATTTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>185 82 78 74 74 62 55 51 49 48 44 36 36 36 34 26 21 9</canonical_bands>
                <polymorphic_bands>185 85 82 78 74 74 62 55 51 48 44 36 36 34 26 21 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATTGCTCTACAGTAAATTATCC</pcr_primer_p1>
		<pcr_primer_p2>TGTTTTCTCAAGTGTTTTCAGAT</pcr_primer_p2>
		<pcr_amplicon_size>326</pcr_amplicon_size>
		<canonical_amplicon>TGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACA</canonical_amplicon>
		<polymorphic_amplicon>TGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCRATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38606</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>696545</contig_pos>
        <strand></strand>
        <context>agctccaagt[C/G]cacgtatcgg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGT</left_flank>
        <right_flank>CACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGA</right_flank>
        <qual_score>49</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTGTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAACAAAATGCGCATTTTTCTAAGGGGACGTGATTGTTAGGAATGTTTCAAAGATCAGAGCAAATCAGGGGATCGGATTCATTTTTTGTCTTCAGTTTGGTTTTAAAACCACGTCATTATAAAAGTGAAATAATACCAG</canonical>
            <polymorphic>TTTTCGTTCCTAATTTTGATAATTTCATGAAATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTSCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTGTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAACAAAATGCGCATTTTTCTAAGGGGACGTGATTGTTAGGAATGTTTCAAAGATCAGAGCAAATCAGGGGATCGGATTCATTTTTTGTCTTCAGTTTGGTTTTAAAACCACGTCATTATAAAAGTGAAATAATACCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCANNNNNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>XcmI</enzyme>
                </isoschizomers>
                <canonical_bands>507 493</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATTGCTCTACAGTAAATTATCC</pcr_primer_p1>
		<pcr_primer_p2>TGTTTTCTCAAGTGTTTTCAGAT</pcr_primer_p2>
		<pcr_amplicon_size>326</pcr_amplicon_size>
		<canonical_amplicon>TGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACA</canonical_amplicon>
		<polymorphic_amplicon>TGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTSCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38607</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>696575</contig_pos>
        <strand></strand>
        <context>tatcacagaa[G/T]ttaccgtATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAA</left_flank>
        <right_flank>TTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTGTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAACAAAATGCGCATTTTTCTAAGGGGACGTGATTGTTAGGAATGTTTCAAAGATCAGAGCAAATCAGGGGATCGGATTCATTTTTTGTCTTCAGTTTGGTTTTAAAACCACGTCATTATAAAAGTGAAATAATACCAGTTTCTTCTTGAAACAACACTGTACTTTGTG</canonical>
            <polymorphic>AATAGGATTGGAAAGAGGAGAACACAGTAAGTAGTAAACATAATCCAGCTCAATAACATCGTTTTTTAAATTTCTCTGAAATCTGTTATCTGTTTAGACTAAAAGTTTCAGAAATTACATGTTAAAAACCCTTTTTTGTAACGGTCAATTATTCTATAAAGGCAAACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAKTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTGTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAACAAAATGCGCATTTTTCTAAGGGGACGTGATTGTTAGGAATGTTTCAAAGATCAGAGCAAATCAGGGGATCGGATTCATTTTTTGTCTTCAGTTTGGTTTTAAAACCACGTCATTATAAAAGTGAAATAATACCAGTTTCTTCTTGAAACAACACTGTACTTTGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 362 137</canonical_bands>
                <polymorphic_bands>863 137</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATTGCTCTACAGTAAATTATCC</pcr_primer_p1>
		<pcr_primer_p2>TGTTTTCTCAAGTGTTTTCAGAT</pcr_primer_p2>
		<pcr_amplicon_size>326</pcr_amplicon_size>
		<canonical_amplicon>TGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACA</canonical_amplicon>
		<polymorphic_amplicon>TGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAKTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38608</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>696739</contig_pos>
        <strand>+</strand>
        <context>GATCGTAAAK[G/T]TTTTAAATAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAAT</left_flank>
        <right_flank>TTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTGTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAACAAAATGCGCATTTTTCTAAGGGGACGTGATTGTTAGGAATGTTTCAAAGATCAGAGCAAATCAGGGGATCGGATTCATTTTTTGTCTTCAGTTTGGTTTTAAAACCACGTCATTATAAAAGTGAAATAATACCAGTTTCTTCTTGAAACAACACTGTACTTTGTGCTTCCTAGTTCCTTGCGAATCACTTGAGGAATAAAAGCTCTTTTCAAACAAATTAATCACCGTTTTGTCGGGTCGTGACTAGTTTCTTCTGTTCGGTTTTTTTTCTTCCTCCTGCTCGGGGAGTAATGATTGCGATCAGATGTTCAAATGGCACAAAAAGCACA</canonical>
            <polymorphic>AACATTGAGCAGATAAGCGTTTCAGCAGATAATTATTGGAAAAAAACTACTAATTTAACAAGATTTACTTCATTCACATTTCAGCCGAATTTTCATTTTTTGAAATATGATTGCTCTACAGTAAATTATCCAATAGAAGACAACCCCATAAGTGCCCTTTGAGCTCAATGACCTAGGTTCATTTGAAAGATCTCAAAAAGCGGCCAATTGATAAAATGTTTATCACAATATCAGCAACATTTTATCAGTTCGCCAATTTCCAACATATTTCATGTCAACTGATGTGAGATAATTTAGCTCCAAGTCCACGTATCGGTTGGACTTCTATCACAGAAGTTACCGTATTTGTTTCATGACAATACTGAATTTCGTAATATCAGATGTTTTTTGAATTTTGAATGATTTCAAATATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATKTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTGTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAACATTGTCAAACAAAATGCGCATTTTTCTAAGGGGACGTGATTGTTAGGAATGTTTCAAAGATCAGAGCAAATCAGGGGATCGGATTCATTTTTTGTCTTCAGTTTGGTTTTAAAACCACGTCATTATAAAAGTGAAATAATACCAGTTTCTTCTTGAAACAACACTGTACTTTGTGCTTCCTAGTTCCTTGCGAATCACTTGAGGAATAAAAGCTCTTTTCAAACAAATTAATCACCGTTTTGTCGGGTCGTGACTAGTTTCTTCTGTTCGGTTTTTTTTCTTCCTCCTGCTCGGGGAGTAATGATTGCGATCAGATGTTCAAATGGCACAAAAAGCACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>430 277 87 74 55 51 26</canonical_bands>
                <polymorphic_bands>430 277 129 87 51 26</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>316 114 82 74 74 55 51 49 36 36 36 30 26 21</canonical_bands>
                <polymorphic_bands>316 129 114 82 74 51 49 36 36 36 30 26 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTGAAAACACTTGAGAAAACA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGAACACAAACAGTGATAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATTTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTGTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATCTGAAAACACTTGAGAAAACACATTTCGAAATTTCTAGCCGGAAAATGTCCAACAACTTTTTTGGTCAGAAAAAGCTGATCGTAAATKTTTTAAATATTTCACAATCCACTTTCCCTAAACCTGTTTTTGTATTGTTTAAAACAACAAAAAACCGAGGAATTCCATTTTTCGCTCTTCTGTTCTTATCCTTCATTTTTACCGCTCATTGTTGTCCCGAGTACATCCTATCACTGTTTGTGTTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38609</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>749189</contig_pos>
        <strand></strand>
        <context>gttcaaactt[C/T]gttacaacaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCAGCATGAGTTTAGATCGAACAGAGACTAGTAGTAGTGTTCAAACTT</left_flank>
        <right_flank>GTTACAACAATGTAAATGAATTGTAGTTTTTGAAAAACATGCTACTTCTC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATATATTGGCCAAGTTTAAAAAAATATATCATTACCCATCCAAAAGTTACAACCGTTCGAATTCACATCCTCAAAATTTCAACTCTTATTTGGACTGCTTTTTTGAGTTTCAGAGTAGGTTGTAAGTAACTGAGAGGAAAGTTCTGTGGAAAAGTGTTTTATTGTAGATTGCAAAAACTGTAGTTTCTAAAAAACAAAACAGTTTTTGTCTATGATTTTCTTGAACTGAGCAGCGATCGTTTTCTCAAAAGTTGTGAAAATTAAGTTTCCGCTTCTATACCGCTCTGGGTAAGGGGCTAGCTTGATGAACCAATATATCATTCAAATCCTCATTTAATACTCTATTTCACAACACAGTTTTTACAATTTTAACTAAGCCCTGAAAGATTTCAAACCAATGAACTCATATTTCAAGGTAATGTTGGCACGCAACTTCTTTTAATTTTATTCCAGCATGAGTTTAGATCGAACAGAGACTAGTAGTAGTGTTCAAACTTCGTTACAACAATGTAAATGAATTGTAGTTTTTGAAAAACATGCTACTTCTCCCACTCCAATCAGTACCTACTATTCAGGCATGGTTTTCCGTTGACCGTTAAAAATTTCGAAAAACTTAATTTTTTTCTTTTGGGAATGAGATAGATAAGCAAATTGTTTTATCATTTTTATTGTCTCTTTATACCCTATCGTAAATAATAGTTTTCCTAATGCTTGGAAAATTTCTCTTGAATTGTTTTGTTGTCAAAACAATAGGTTAATCAAATTGCATATGCAAGTTTGAACGTCTCCAGTTTCATTGATTGCTGAATCTTACAGTTTCATGTTTCATGCACGTTATAAACAGGACTCATAGTTTCCAAAAAGCAAATTTTCAAAGTCCCGGCATAACCAGTAAGAGAGGTAGAAAAGAGTAAACTTGAAAAAAGCTTCGTGTCTCAAGCATTATGTGATCAACCACTTTTCCGATCCTGTCGGGAAAACTAGGAAAGATAAATTGA</canonical>
            <polymorphic>GAATATATTGGCCAAGTTTAAAAAAATATATCATTACCCATCCAAAAGTTACAACCGTTCGAATTCACATCCTCAAAATTTCAACTCTTATTTGGACTGCTTTTTTGAGTTTCAGAGTAGGTTGTAAGTAACTGAGAGGAAAGTTCTGTGGAAAAGTGTTTTATTGTAGATTGCAAAAACTGTAGTTTCTAAAAAACAAAACAGTTTTTGTCTATGATTTTCTTGAACTGAGCAGCGATCGTTTTCTCAAAAGTTGTGAAAATTAAGTTTCCGCTTCTATACCGCTCTGGGTAAGGGGCTAGCTTGATGAACCAATATATCATTCAAATCCTCATTTAATACTCTATTTCACAACACAGTTTTTACAATTTTAACTAAGCCCTGAAAGATTTCAAACCAATGAACTCATATTTCAAGGTAATGTTGGCACGCAACTTCTTTTAATTTTATTCCAGCATGAGTTTAGATCGAACAGAGACTAGTAGTAGTGTTCAAACTTYGTTACAACAATGTAAATGAATTGTAGTTTTTGAAAAACATGCTACTTCTCCCACTCCAATCAGTACCTACTATTCAGGCATGGTTTTCCGTTGACCGTTAAAAATTTCGAAAAACTTAATTTTTTTCTTTTGGGAATGAGATAGATAAGCAAATTGTTTTATCATTTTTATTGTCTCTTTATACCCTATCGTAAATAATAGTTTTCCTAATGCTTGGAAAATTTCTCTTGAATTGTTTTGTTGTCAAAACAATAGGTTAATCAAATTGCATATGCAAGTTTGAACGTCTCCAGTTTCATTGATTGCTGAATCTTACAGTTTCATGTTTCATGCACGTTATAAACAGGACTCATAGTTTCCAAAAAGCAAATTTTCAAAGTCCCGGCATAACCAGTAAGAGAGGTAGAAAAGAGTAAACTTGAAAAAAGCTTCGTGTCTCAAGCATTATGTGATCAACCACTTTTCCGATCCTGTCGGGAAAACTAGGAAAGATAAATTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGTGGAAAAGTGTTTTATTGT</pcr_primer_p1>
		<pcr_primer_p2>GTTATACAGGGTGCGACAAA</pcr_primer_p2>
		<pcr_amplicon_size>987</pcr_amplicon_size>
		<canonical_amplicon>TCTGTGGAAAAGTGTTTTATTGTAGATTGCAAAAACTGTAGTTTCTAAAAAACAAAACAGTTTTTGTCTATGATTTTCTTGAACTGAGCAGCGATCGTTTTCTCAAAAGTTGTGAAAATTAAGTTTCCGCTTCTATACCGCTCTGGGTAAGGGGCTAGCTTGATGAACCAATATATCATTCAAATCCTCATTTAATACTCTATTTCACAACACAGTTTTTACAATTTTAACTAAGCCCTGAAAGATTTCAAACCAATGAACTCATATTTCAAGGTAATGTTGGCACGCAACTTCTTTTAATTTTATTCCAGCATGAGTTTAGATCGAACAGAGACTAGTAGTAGTGTTCAAACTTCGTTACAACAATGTAAATGA</canonical_amplicon>
		<polymorphic_amplicon>TCTGTGGAAAAGTGTTTTATTGTAGATTGCAAAAACTGTAGTTTCTAAAAAACAAAACAGTTTTTGTCTATGATTTTCTTGAACTGAGCAGCGATCGTTTTCTCAAAAGTTGTGAAAATTAAGTTTCCGCTTCTATACCGCTCTGGGTAAGGGGCTAGCTTGATGAACCAATATATCATTCAAATCCTCATTTAATACTCTATTTCACAACACAGTTTTTACAATTTTAACTAAGCCCTGAAAGATTTCAAACCAATGAACTCATATTTCAAGGTAATGTTGGCACGCAACTTCTTTTAATTTTATTCCAGCATGAGTTTAGATCGAACAGAGACTAGTAGTAGTGTTCAAACTTYGTTACAACAATGTAAATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38610</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>749223</contig_pos>
        <strand></strand>
        <context>tagtttttga[A/T]aaacatgcta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTAGTGTTCAAACTTCGTTACAACAATGTAAATGAATTGTAGTTTTTGA</left_flank>
        <right_flank>AAACATGCTACTTCTCCCACTCCAATCAGTACCTACTATTCAGGCATGGT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACCCATCCAAAAGTTACAACCGTTCGAATTCACATCCTCAAAATTTCAACTCTTATTTGGACTGCTTTTTTGAGTTTCAGAGTAGGTTGTAAGTAACTGAGAGGAAAGTTCTGTGGAAAAGTGTTTTATTGTAGATTGCAAAAACTGTAGTTTCTAAAAAACAAAACAGTTTTTGTCTATGATTTTCTTGAACTGAGCAGCGATCGTTTTCTCAAAAGTTGTGAAAATTAAGTTTCCGCTTCTATACCGCTCTGGGTAAGGGGCTAGCTTGATGAACCAATATATCATTCAAATCCTCATTTAATACTCTATTTCACAACACAGTTTTTACAATTTTAACTAAGCCCTGAAAGATTTCAAACCAATGAACTCATATTTCAAGGTAATGTTGGCACGCAACTTCTTTTAATTTTATTCCAGCATGAGTTTAGATCGAACAGAGACTAGTAGTAGTGTTCAAACTTCGTTACAACAATGTAAATGAATTGTAGTTTTTGAAAAACATGCTACTTCTCCCACTCCAATCAGTACCTACTATTCAGGCATGGTTTTCCGTTGACCGTTAAAAATTTCGAAAAACTTAATTTTTTTCTTTTGGGAATGAGATAGATAAGCAAATTGTTTTATCATTTTTATTGTCTCTTTATACCCTATCGTAAATAATAGTTTTCCTAATGCTTGGAAAATTTCTCTTGAATTGTTTTGTTGTCAAAACAATAGGTTAATCAAATTGCATATGCAAGTTTGAACGTCTCCAGTTTCATTGATTGCTGAATCTTACAGTTTCATGTTTCATGCACGTTATAAACAGGACTCATAGTTTCCAAAAAGCAAATTTTCAAAGTCCCGGCATAACCAGTAAGAGAGGTAGAAAAGAGTAAACTTGAAAAAAGCTTCGTGTCTCAAGCATTATGTGATCAACCACTTTTCCGATCCTGTCGGGAAAACTAGGAAAGATAAATTGAGAAACCAAAATTATTGTTAAATGTCAGCGTTGAA</canonical>
            <polymorphic>TACCCATCCAAAAGTTACAACCGTTCGAATTCACATCCTCAAAATTTCAACTCTTATTTGGACTGCTTTTTTGAGTTTCAGAGTAGGTTGTAAGTAACTGAGAGGAAAGTTCTGTGGAAAAGTGTTTTATTGTAGATTGCAAAAACTGTAGTTTCTAAAAAACAAAACAGTTTTTGTCTATGATTTTCTTGAACTGAGCAGCGATCGTTTTCTCAAAAGTTGTGAAAATTAAGTTTCCGCTTCTATACCGCTCTGGGTAAGGGGCTAGCTTGATGAACCAATATATCATTCAAATCCTCATTTAATACTCTATTTCACAACACAGTTTTTACAATTTTAACTAAGCCCTGAAAGATTTCAAACCAATGAACTCATATTTCAAGGTAATGTTGGCACGCAACTTCTTTTAATTTTATTCCAGCATGAGTTTAGATCGAACAGAGACTAGTAGTAGTGTTCAAACTTCGTTACAACAATGTAAATGAATTGTAGTTTTTGAWAAACATGCTACTTCTCCCACTCCAATCAGTACCTACTATTCAGGCATGGTTTTCCGTTGACCGTTAAAAATTTCGAAAAACTTAATTTTTTTCTTTTGGGAATGAGATAGATAAGCAAATTGTTTTATCATTTTTATTGTCTCTTTATACCCTATCGTAAATAATAGTTTTCCTAATGCTTGGAAAATTTCTCTTGAATTGTTTTGTTGTCAAAACAATAGGTTAATCAAATTGCATATGCAAGTTTGAACGTCTCCAGTTTCATTGATTGCTGAATCTTACAGTTTCATGTTTCATGCACGTTATAAACAGGACTCATAGTTTCCAAAAAGCAAATTTTCAAAGTCCCGGCATAACCAGTAAGAGAGGTAGAAAAGAGTAAACTTGAAAAAAGCTTCGTGTCTCAAGCATTATGTGATCAACCACTTTTCCGATCCTGTCGGGAAAACTAGGAAAGATAAATTGAGAAACCAAAATTATTGTTAAATGTCAGCGTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGTGGAAAAGTGTTTTATTGT</pcr_primer_p1>
		<pcr_primer_p2>GTTATACAGGGTGCGACAAA</pcr_primer_p2>
		<pcr_amplicon_size>987</pcr_amplicon_size>
		<canonical_amplicon>TCTGTGGAAAAGTGTTTTATTGTAGATTGCAAAAACTGTAGTTTCTAAAAAACAAAACAGTTTTTGTCTATGATTTTCTTGAACTGAGCAGCGATCGTTTTCTCAAAAGTTGTGAAAATTAAGTTTCCGCTTCTATACCGCTCTGGGTAAGGGGCTAGCTTGATGAACCAATATATCATTCAAATCCTCATTTAATACTCTATTTCACAACACAGTTTTTACAATTTTAACTAAGCCCTGAAAGATTTCAAACCAATGAACTCATATTTCAAGGTAATGTTGGCACGCAACTTCTTTTAATTTTATTCCAGCATGAGTTTAGATCGAACAGAGACTAGTAGTAGTGTTCAAACTTCGTTACAACAATGTAAATGAATTGTAGTTTTTGAAAAACATGCTACTTCTCCCA</canonical_amplicon>
		<polymorphic_amplicon>TCTGTGGAAAAGTGTTTTATTGTAGATTGCAAAAACTGTAGTTTCTAAAAAACAAAACAGTTTTTGTCTATGATTTTCTTGAACTGAGCAGCGATCGTTTTCTCAAAAGTTGTGAAAATTAAGTTTCCGCTTCTATACCGCTCTGGGTAAGGGGCTAGCTTGATGAACCAATATATCATTCAAATCCTCATTTAATACTCTATTTCACAACACAGTTTTTACAATTTTAACTAAGCCCTGAAAGATTTCAAACCAATGAACTCATATTTCAAGGTAATGTTGGCACGCAACTTCTTTTAATTTTATTCCAGCATGAGTTTAGATCGAACAGAGACTAGTAGTAGTGTTCAAACTTCGTTACAACAATGTAAATGAATTGTAGTTTTTGAWAAACATGCTACTTCTCCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38611</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>749252</contig_pos>
        <strand></strand>
        <context>actccaatca[G/T]tacctactat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAAATGAATTGTAGTTTTTGAAAAACATGCTACTTCTCCCACTCCAATCA</left_flank>
        <right_flank>TACCTACTATTCAGGCATGGTTTTCCGTTGACCGTTAAAAATTTCGAAAA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCACATCCTCAAAATTTCAACTCTTATTTGGACTGCTTTTTTGAGTTTCAGAGTAGGTTGTAAGTAACTGAGAGGAAAGTTCTGTGGAAAAGTGTTTTATTGTAGATTGCAAAAACTGTAGTTTCTAAAAAACAAAACAGTTTTTGTCTATGATTTTCTTGAACTGAGCAGCGATCGTTTTCTCAAAAGTTGTGAAAATTAAGTTTCCGCTTCTATACCGCTCTGGGTAAGGGGCTAGCTTGATGAACCAATATATCATTCAAATCCTCATTTAATACTCTATTTCACAACACAGTTTTTACAATTTTAACTAAGCCCTGAAAGATTTCAAACCAATGAACTCATATTTCAAGGTAATGTTGGCACGCAACTTCTTTTAATTTTATTCCAGCATGAGTTTAGATCGAACAGAGACTAGTAGTAGTGTTCAAACTTCGTTACAACAATGTAAATGAATTGTAGTTTTTGAAAAACATGCTACTTCTCCCACTCCAATCAGTACCTACTATTCAGGCATGGTTTTCCGTTGACCGTTAAAAATTTCGAAAAACTTAATTTTTTTCTTTTGGGAATGAGATAGATAAGCAAATTGTTTTATCATTTTTATTGTCTCTTTATACCCTATCGTAAATAATAGTTTTCCTAATGCTTGGAAAATTTCTCTTGAATTGTTTTGTTGTCAAAACAATAGGTTAATCAAATTGCATATGCAAGTTTGAACGTCTCCAGTTTCATTGATTGCTGAATCTTACAGTTTCATGTTTCATGCACGTTATAAACAGGACTCATAGTTTCCAAAAAGCAAATTTTCAAAGTCCCGGCATAACCAGTAAGAGAGGTAGAAAAGAGTAAACTTGAAAAAAGCTTCGTGTCTCAAGCATTATGTGATCAACCACTTTTCCGATCCTGTCGGGAAAACTAGGAAAGATAAATTGAGAAACCAAAATTATTGTTAAATGTCAGCGTTGAAATGATCTACCTGCAAAGTTTTAAATATTT</canonical>
            <polymorphic>TTCACATCCTCAAAATTTCAACTCTTATTTGGACTGCTTTTTTGAGTTTCAGAGTAGGTTGTAAGTAACTGAGAGGAAAGTTCTGTGGAAAAGTGTTTTATTGTAGATTGCAAAAACTGTAGTTTCTAAAAAACAAAACAGTTTTTGTCTATGATTTTCTTGAACTGAGCAGCGATCGTTTTCTCAAAAGTTGTGAAAATTAAGTTTCCGCTTCTATACCGCTCTGGGTAAGGGGCTAGCTTGATGAACCAATATATCATTCAAATCCTCATTTAATACTCTATTTCACAACACAGTTTTTACAATTTTAACTAAGCCCTGAAAGATTTCAAACCAATGAACTCATATTTCAAGGTAATGTTGGCACGCAACTTCTTTTAATTTTATTCCAGCATGAGTTTAGATCGAACAGAGACTAGTAGTAGTGTTCAAACTTCGTTACAACAATGTAAATGAATTGTAGTTTTTGAAAAACATGCTACTTCTCCCACTCCAATCAKTACCTACTATTCAGGCATGGTTTTCCGTTGACCGTTAAAAATTTCGAAAAACTTAATTTTTTTCTTTTGGGAATGAGATAGATAAGCAAATTGTTTTATCATTTTTATTGTCTCTTTATACCCTATCGTAAATAATAGTTTTCCTAATGCTTGGAAAATTTCTCTTGAATTGTTTTGTTGTCAAAACAATAGGTTAATCAAATTGCATATGCAAGTTTGAACGTCTCCAGTTTCATTGATTGCTGAATCTTACAGTTTCATGTTTCATGCACGTTATAAACAGGACTCATAGTTTCCAAAAAGCAAATTTTCAAAGTCCCGGCATAACCAGTAAGAGAGGTAGAAAAGAGTAAACTTGAAAAAAGCTTCGTGTCTCAAGCATTATGTGATCAACCACTTTTCCGATCCTGTCGGGAAAACTAGGAAAGATAAATTGAGAAACCAAAATTATTGTTAAATGTCAGCGTTGAAATGATCTACCTGCAAAGTTTTAAATATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGTGGAAAAGTGTTTTATTGT</pcr_primer_p1>
		<pcr_primer_p2>GTTATACAGGGTGCGACAAA</pcr_primer_p2>
		<pcr_amplicon_size>987</pcr_amplicon_size>
		<canonical_amplicon>TCTGTGGAAAAGTGTTTTATTGTAGATTGCAAAAACTGTAGTTTCTAAAAAACAAAACAGTTTTTGTCTATGATTTTCTTGAACTGAGCAGCGATCGTTTTCTCAAAAGTTGTGAAAATTAAGTTTCCGCTTCTATACCGCTCTGGGTAAGGGGCTAGCTTGATGAACCAATATATCATTCAAATCCTCATTTAATACTCTATTTCACAACACAGTTTTTACAATTTTAACTAAGCCCTGAAAGATTTCAAACCAATGAACTCATATTTCAAGGTAATGTTGGCACGCAACTTCTTTTAATTTTATTCCAGCATGAGTTTAGATCGAACAGAGACTAGTAGTAGTGTTCAAACTTCGTTACAACAATGTAAATGAATTGTAGTTTTTGAAAAACATGCTACTTCTCCCACTCCAATCAGTACCTACTATTCAGGCATG</canonical_amplicon>
		<polymorphic_amplicon>TCTGTGGAAAAGTGTTTTATTGTAGATTGCAAAAACTGTAGTTTCTAAAAAACAAAACAGTTTTTGTCTATGATTTTCTTGAACTGAGCAGCGATCGTTTTCTCAAAAGTTGTGAAAATTAAGTTTCCGCTTCTATACCGCTCTGGGTAAGGGGCTAGCTTGATGAACCAATATATCATTCAAATCCTCATTTAATACTCTATTTCACAACACAGTTTTTACAATTTTAACTAAGCCCTGAAAGATTTCAAACCAATGAACTCATATTTCAAGGTAATGTTGGCACGCAACTTCTTTTAATTTTATTCCAGCATGAGTTTAGATCGAACAGAGACTAGTAGTAGTGTTCAAACTTCGTTACAACAATGTAAATGAATTGTAGTTTTTGAAAAACATGCTACTTCTCCCACTCCAATCAKTACCTACTATTCAGGCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38612</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>749280</contig_pos>
        <strand></strand>
        <context>tggttttccg[T/C]tgaccgttaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCTACTTCTCCCACTCCAATCAGTACCTACTATTCAGGCATGGTTTTCCG</left_flank>
        <right_flank>TGACCGTTAAAAATTTCGAAAAACTTAATTTTTTTCTTTTGGGAATGAGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGACTGCTTTTTTGAGTTTCAGAGTAGGTTGTAAGTAACTGAGAGGAAAGTTCTGTGGAAAAGTGTTTTATTGTAGATTGCAAAAACTGTAGTTTCTAAAAAACAAAACAGTTTTTGTCTATGATTTTCTTGAACTGAGCAGCGATCGTTTTCTCAAAAGTTGTGAAAATTAAGTTTCCGCTTCTATACCGCTCTGGGTAAGGGGCTAGCTTGATGAACCAATATATCATTCAAATCCTCATTTAATACTCTATTTCACAACACAGTTTTTACAATTTTAACTAAGCCCTGAAAGATTTCAAACCAATGAACTCATATTTCAAGGTAATGTTGGCACGCAACTTCTTTTAATTTTATTCCAGCATGAGTTTAGATCGAACAGAGACTAGTAGTAGTGTTCAAACTTCGTTACAACAATGTAAATGAATTGTAGTTTTTGAAAAACATGCTACTTCTCCCACTCCAATCAGTACCTACTATTCAGGCATGGTTTTCCGTTGACCGTTAAAAATTTCGAAAAACTTAATTTTTTTCTTTTGGGAATGAGATAGATAAGCAAATTGTTTTATCATTTTTATTGTCTCTTTATACCCTATCGTAAATAATAGTTTTCCTAATGCTTGGAAAATTTCTCTTGAATTGTTTTGTTGTCAAAACAATAGGTTAATCAAATTGCATATGCAAGTTTGAACGTCTCCAGTTTCATTGATTGCTGAATCTTACAGTTTCATGTTTCATGCACGTTATAAACAGGACTCATAGTTTCCAAAAAGCAAATTTTCAAAGTCCCGGCATAACCAGTAAGAGAGGTAGAAAAGAGTAAACTTGAAAAAAGCTTCGTGTCTCAAGCATTATGTGATCAACCACTTTTCCGATCCTGTCGGGAAAACTAGGAAAGATAAATTGAGAAACCAAAATTATTGTTAAATGTCAGCGTTGAAATGATCTACCTGCAAAGTTTTAAATATTTCGGTTTACCTAGAAGAAAGTTACAACGA</canonical>
            <polymorphic>TTGGACTGCTTTTTTGAGTTTCAGAGTAGGTTGTAAGTAACTGAGAGGAAAGTTCTGTGGAAAAGTGTTTTATTGTAGATTGCAAAAACTGTAGTTTCTAAAAAACAAAACAGTTTTTGTCTATGATTTTCTTGAACTGAGCAGCGATCGTTTTCTCAAAAGTTGTGAAAATTAAGTTTCCGCTTCTATACCGCTCTGGGTAAGGGGCTAGCTTGATGAACCAATATATCATTCAAATCCTCATTTAATACTCTATTTCACAACACAGTTTTTACAATTTTAACTAAGCCCTGAAAGATTTCAAACCAATGAACTCATATTTCAAGGTAATGTTGGCACGCAACTTCTTTTAATTTTATTCCAGCATGAGTTTAGATCGAACAGAGACTAGTAGTAGTGTTCAAACTTCGTTACAACAATGTAAATGAATTGTAGTTTTTGAAAAACATGCTACTTCTCCCACTCCAATCAGTACCTACTATTCAGGCATGGTTTTCCGYTGACCGTTAAAAATTTCGAAAAACTTAATTTTTTTCTTTTGGGAATGAGATAGATAAGCAAATTGTTTTATCATTTTTATTGTCTCTTTATACCCTATCGTAAATAATAGTTTTCCTAATGCTTGGAAAATTTCTCTTGAATTGTTTTGTTGTCAAAACAATAGGTTAATCAAATTGCATATGCAAGTTTGAACGTCTCCAGTTTCATTGATTGCTGAATCTTACAGTTTCATGTTTCATGCACGTTATAAACAGGACTCATAGTTTCCAAAAAGCAAATTTTCAAAGTCCCGGCATAACCAGTAAGAGAGGTAGAAAAGAGTAAACTTGAAAAAAGCTTCGTGTCTCAAGCATTATGTGATCAACCACTTTTCCGATCCTGTCGGGAAAACTAGGAAAGATAAATTGAGAAACCAAAATTATTGTTAAATGTCAGCGTTGAAATGATCTACCTGCAAAGTTTTAAATATTTCGGTTTACCTAGAAGAAAGTTACAACGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 323 153 23</canonical_bands>
                <polymorphic_bands>824 153 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGTGGAAAAGTGTTTTATTGT</pcr_primer_p1>
		<pcr_primer_p2>GTTATACAGGGTGCGACAAA</pcr_primer_p2>
		<pcr_amplicon_size>987</pcr_amplicon_size>
		<canonical_amplicon>TCTGTGGAAAAGTGTTTTATTGTAGATTGCAAAAACTGTAGTTTCTAAAAAACAAAACAGTTTTTGTCTATGATTTTCTTGAACTGAGCAGCGATCGTTTTCTCAAAAGTTGTGAAAATTAAGTTTCCGCTTCTATACCGCTCTGGGTAAGGGGCTAGCTTGATGAACCAATATATCATTCAAATCCTCATTTAATACTCTATTTCACAACACAGTTTTTACAATTTTAACTAAGCCCTGAAAGATTTCAAACCAATGAACTCATATTTCAAGGTAATGTTGGCACGCAACTTCTTTTAATTTTATTCCAGCATGAGTTTAGATCGAACAGAGACTAGTAGTAGTGTTCAAACTTCGTTACAACAATGTAAATGAATTGTAGTTTTTGAAAAACATGCTACTTCTCCCACTCCAATCAGTACCTACTATTCAGGCATGGTTTTCCGTTGACCGTTAAAAATTTCGA</canonical_amplicon>
		<polymorphic_amplicon>TCTGTGGAAAAGTGTTTTATTGTAGATTGCAAAAACTGTAGTTTCTAAAAAACAAAACAGTTTTTGTCTATGATTTTCTTGAACTGAGCAGCGATCGTTTTCTCAAAAGTTGTGAAAATTAAGTTTCCGCTTCTATACCGCTCTGGGTAAGGGGCTAGCTTGATGAACCAATATATCATTCAAATCCTCATTTAATACTCTATTTCACAACACAGTTTTTACAATTTTAACTAAGCCCTGAAAGATTTCAAACCAATGAACTCATATTTCAAGGTAATGTTGGCACGCAACTTCTTTTAATTTTATTCCAGCATGAGTTTAGATCGAACAGAGACTAGTAGTAGTGTTCAAACTTCGTTACAACAATGTAAATGAATTGTAGTTTTTGAAAAACATGCTACTTCTCCCACTCCAATCAGTACCTACTATTCAGGCATGGTTTTCCGYTGACCGTTAAAAATTTCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38613</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>749389</contig_pos>
        <strand></strand>
        <context>cgtaaataat[A/G]gttttcctaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAATTGTTTTATCATTTTTATTGTCTCTTTATACCCTATCGTAAATAAT</left_flank>
        <right_flank>GTTTTCCTAATGCTTGGAAAATTTCTCTTGAATTGTTTTGTTGTCAAAAC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGTTTTTGTCTATGATTTTCTTGAACTGAGCAGCGATCGTTTTCTCAAAAGTTGTGAAAATTAAGTTTCCGCTTCTATACCGCTCTGGGTAAGGGGCTAGCTTGATGAACCAATATATCATTCAAATCCTCATTTAATACTCTATTTCACAACACAGTTTTTACAATTTTAACTAAGCCCTGAAAGATTTCAAACCAATGAACTCATATTTCAAGGTAATGTTGGCACGCAACTTCTTTTAATTTTATTCCAGCATGAGTTTAGATCGAACAGAGACTAGTAGTAGTGTTCAAACTTCGTTACAACAATGTAAATGAATTGTAGTTTTTGAAAAACATGCTACTTCTCCCACTCCAATCAGTACCTACTATTCAGGCATGGTTTTCCGTTGACCGTTAAAAATTTCGAAAAACTTAATTTTTTTCTTTTGGGAATGAGATAGATAAGCAAATTGTTTTATCATTTTTATTGTCTCTTTATACCCTATCGTAAATAATAGTTTTCCTAATGCTTGGAAAATTTCTCTTGAATTGTTTTGTTGTCAAAACAATAGGTTAATCAAATTGCATATGCAAGTTTGAACGTCTCCAGTTTCATTGATTGCTGAATCTTACAGTTTCATGTTTCATGCACGTTATAAACAGGACTCATAGTTTCCAAAAAGCAAATTTTCAAAGTCCCGGCATAACCAGTAAGAGAGGTAGAAAAGAGTAAACTTGAAAAAAGCTTCGTGTCTCAAGCATTATGTGATCAACCACTTTTCCGATCCTGTCGGGAAAACTAGGAAAGATAAATTGAGAAACCAAAATTATTGTTAAATGTCAGCGTTGAAATGATCTACCTGCAAAGTTTTAAATATTTCGGTTTACCTAGAAGAAAGTTACAACGACTTCTTTATGCACAAGTATTTTTGTCGCACCCTGTATAACTGCGAGTTGCAAATGCGAAAACATTCAGTGTGAACTAGAAATTTAATGTTCGTACTAGACTGAAGATTG</canonical>
            <polymorphic>ACAGTTTTTGTCTATGATTTTCTTGAACTGAGCAGCGATCGTTTTCTCAAAAGTTGTGAAAATTAAGTTTCCGCTTCTATACCGCTCTGGGTAAGGGGCTAGCTTGATGAACCAATATATCATTCAAATCCTCATTTAATACTCTATTTCACAACACAGTTTTTACAATTTTAACTAAGCCCTGAAAGATTTCAAACCAATGAACTCATATTTCAAGGTAATGTTGGCACGCAACTTCTTTTAATTTTATTCCAGCATGAGTTTAGATCGAACAGAGACTAGTAGTAGTGTTCAAACTTCGTTACAACAATGTAAATGAATTGTAGTTTTTGAAAAACATGCTACTTCTCCCACTCCAATCAGTACCTACTATTCAGGCATGGTTTTCCGTTGACCGTTAAAAATTTCGAAAAACTTAATTTTTTTCTTTTGGGAATGAGATAGATAAGCAAATTGTTTTATCATTTTTATTGTCTCTTTATACCCTATCGTAAATAATRGTTTTCCTAATGCTTGGAAAATTTCTCTTGAATTGTTTTGTTGTCAAAACAATAGGTTAATCAAATTGCATATGCAAGTTTGAACGTCTCCAGTTTCATTGATTGCTGAATCTTACAGTTTCATGTTTCATGCACGTTATAAACAGGACTCATAGTTTCCAAAAAGCAAATTTTCAAAGTCCCGGCATAACCAGTAAGAGAGGTAGAAAAGAGTAAACTTGAAAAAAGCTTCGTGTCTCAAGCATTATGTGATCAACCACTTTTCCGATCCTGTCGGGAAAACTAGGAAAGATAAATTGAGAAACCAAAATTATTGTTAAATGTCAGCGTTGAAATGATCTACCTGCAAAGTTTTAAATATTTCGGTTTACCTAGAAGAAAGTTACAACGACTTCTTTATGCACAAGTATTTTTGTCGCACCCTGTATAACTGCGAGTTGCAAATGCGAAAACATTCAGTGTGAACTAGAAATTTAATGTTCGTACTAGACTGAAGATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGTGGAAAAGTGTTTTATTGT</pcr_primer_p1>
		<pcr_primer_p2>GTTATACAGGGTGCGACAAA</pcr_primer_p2>
		<pcr_amplicon_size>987</pcr_amplicon_size>
		<canonical_amplicon>TAGTTTTCCTAATGCTTGGAAAATTTCTCTTGAATTGTTTTGTTGTCAAAACAATAGGTTAATCAAATTGCATATGCAAGTTTGAACGTCTCCAGTTTCATTGATTGCTGAATCTTACAGTTTCATGTTTCATGCACGTTATAAACAGGACTCATAGTTTCCAAAAAGCAAATTTTCAAAGTCCCGGCATAACCAGTAAGAGAGGTAGAAAAGAGTAAACTTGAAAAAAGCTTCGTGTCTCAAGCATTATGTGATCAACCACTTTTCCGATCCTGTCGGGAAAACTAGGAAAGATAAATTGAGAAACCAAAATTATTGTTAAATGTCAGCGTTGAAATGATCTACCTGCAAAGTTTTAAATATTTCGGTTTACCTAGAAGAAAGTTACAACGACTTCTTTATGCACAAGTATTTTTGTCGCACCCTGTATAAC</canonical_amplicon>
		<polymorphic_amplicon>TRGTTTTCCTAATGCTTGGAAAATTTCTCTTGAATTGTTTTGTTGTCAAAACAATAGGTTAATCAAATTGCATATGCAAGTTTGAACGTCTCCAGTTTCATTGATTGCTGAATCTTACAGTTTCATGTTTCATGCACGTTATAAACAGGACTCATAGTTTCCAAAAAGCAAATTTTCAAAGTCCCGGCATAACCAGTAAGAGAGGTAGAAAAGAGTAAACTTGAAAAAAGCTTCGTGTCTCAAGCATTATGTGATCAACCACTTTTCCGATCCTGTCGGGAAAACTAGGAAAGATAAATTGAGAAACCAAAATTATTGTTAAATGTCAGCGTTGAAATGATCTACCTGCAAAGTTTTAAATATTTCGGTTTACCTAGAAGAAAGTTACAACGACTTCTTTATGCACAAGTATTTTTGTCGCACCCTGTATAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38614</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>749404</contig_pos>
        <strand></strand>
        <context>tcctaatgct[T/A]ggaaaatttc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTTTATTGTCTCTTTATACCCTATCGTAAATAATAGTTTTCCTAATGCT</left_flank>
        <right_flank>GGAAAATTTCTCTTGAATTGTTTTGTTGTCAAAACAATAGGTTAATCAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTTCTTGAACTGAGCAGCGATCGTTTTCTCAAAAGTTGTGAAAATTAAGTTTCCGCTTCTATACCGCTCTGGGTAAGGGGCTAGCTTGATGAACCAATATATCATTCAAATCCTCATTTAATACTCTATTTCACAACACAGTTTTTACAATTTTAACTAAGCCCTGAAAGATTTCAAACCAATGAACTCATATTTCAAGGTAATGTTGGCACGCAACTTCTTTTAATTTTATTCCAGCATGAGTTTAGATCGAACAGAGACTAGTAGTAGTGTTCAAACTTCGTTACAACAATGTAAATGAATTGTAGTTTTTGAAAAACATGCTACTTCTCCCACTCCAATCAGTACCTACTATTCAGGCATGGTTTTCCGTTGACCGTTAAAAATTTCGAAAAACTTAATTTTTTTCTTTTGGGAATGAGATAGATAAGCAAATTGTTTTATCATTTTTATTGTCTCTTTATACCCTATCGTAAATAATAGTTTTCCTAATGCTTGGAAAATTTCTCTTGAATTGTTTTGTTGTCAAAACAATAGGTTAATCAAATTGCATATGCAAGTTTGAACGTCTCCAGTTTCATTGATTGCTGAATCTTACAGTTTCATGTTTCATGCACGTTATAAACAGGACTCATAGTTTCCAAAAAGCAAATTTTCAAAGTCCCGGCATAACCAGTAAGAGAGGTAGAAAAGAGTAAACTTGAAAAAAGCTTCGTGTCTCAAGCATTATGTGATCAACCACTTTTCCGATCCTGTCGGGAAAACTAGGAAAGATAAATTGAGAAACCAAAATTATTGTTAAATGTCAGCGTTGAAATGATCTACCTGCAAAGTTTTAAATATTTCGGTTTACCTAGAAGAAAGTTACAACGACTTCTTTATGCACAAGTATTTTTGTCGCACCCTGTATAACTGCGAGTTGCAAATGCGAAAACATTCAGTGTGAACTAGAAATTTAATGTTCGTACTAGACTGAAGATTGGTGGACAAACACTGA</canonical>
            <polymorphic>GATTTTCTTGAACTGAGCAGCGATCGTTTTCTCAAAAGTTGTGAAAATTAAGTTTCCGCTTCTATACCGCTCTGGGTAAGGGGCTAGCTTGATGAACCAATATATCATTCAAATCCTCATTTAATACTCTATTTCACAACACAGTTTTTACAATTTTAACTAAGCCCTGAAAGATTTCAAACCAATGAACTCATATTTCAAGGTAATGTTGGCACGCAACTTCTTTTAATTTTATTCCAGCATGAGTTTAGATCGAACAGAGACTAGTAGTAGTGTTCAAACTTCGTTACAACAATGTAAATGAATTGTAGTTTTTGAAAAACATGCTACTTCTCCCACTCCAATCAGTACCTACTATTCAGGCATGGTTTTCCGTTGACCGTTAAAAATTTCGAAAAACTTAATTTTTTTCTTTTGGGAATGAGATAGATAAGCAAATTGTTTTATCATTTTTATTGTCTCTTTATACCCTATCGTAAATAATAGTTTTCCTAATGCTWGGAAAATTTCTCTTGAATTGTTTTGTTGTCAAAACAATAGGTTAATCAAATTGCATATGCAAGTTTGAACGTCTCCAGTTTCATTGATTGCTGAATCTTACAGTTTCATGTTTCATGCACGTTATAAACAGGACTCATAGTTTCCAAAAAGCAAATTTTCAAAGTCCCGGCATAACCAGTAAGAGAGGTAGAAAAGAGTAAACTTGAAAAAAGCTTCGTGTCTCAAGCATTATGTGATCAACCACTTTTCCGATCCTGTCGGGAAAACTAGGAAAGATAAATTGAGAAACCAAAATTATTGTTAAATGTCAGCGTTGAAATGATCTACCTGCAAAGTTTTAAATATTTCGGTTTACCTAGAAGAAAGTTACAACGACTTCTTTATGCACAAGTATTTTTGTCGCACCCTGTATAACTGCGAGTTGCAAATGCGAAAACATTCAGTGTGAACTAGAAATTTAATGTTCGTACTAGACTGAAGATTGGTGGACAAACACTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGTGGAAAAGTGTTTTATTGT</pcr_primer_p1>
		<pcr_primer_p2>GTTATACAGGGTGCGACAAA</pcr_primer_p2>
		<pcr_amplicon_size>987</pcr_amplicon_size>
		<canonical_amplicon>TTGGAAAATTTCTCTTGAATTGTTTTGTTGTCAAAACAATAGGTTAATCAAATTGCATATGCAAGTTTGAACGTCTCCAGTTTCATTGATTGCTGAATCTTACAGTTTCATGTTTCATGCACGTTATAAACAGGACTCATAGTTTCCAAAAAGCAAATTTTCAAAGTCCCGGCATAACCAGTAAGAGAGGTAGAAAAGAGTAAACTTGAAAAAAGCTTCGTGTCTCAAGCATTATGTGATCAACCACTTTTCCGATCCTGTCGGGAAAACTAGGAAAGATAAATTGAGAAACCAAAATTATTGTTAAATGTCAGCGTTGAAATGATCTACCTGCAAAGTTTTAAATATTTCGGTTTACCTAGAAGAAAGTTACAACGACTTCTTTATGCACAAGTATTTTTGTCGCACCCTGTATAAC</canonical_amplicon>
		<polymorphic_amplicon>TWGGAAAATTTCTCTTGAATTGTTTTGTTGTCAAAACAATAGGTTAATCAAATTGCATATGCAAGTTTGAACGTCTCCAGTTTCATTGATTGCTGAATCTTACAGTTTCATGTTTCATGCACGTTATAAACAGGACTCATAGTTTCCAAAAAGCAAATTTTCAAAGTCCCGGCATAACCAGTAAGAGAGGTAGAAAAGAGTAAACTTGAAAAAAGCTTCGTGTCTCAAGCATTATGTGATCAACCACTTTTCCGATCCTGTCGGGAAAACTAGGAAAGATAAATTGAGAAACCAAAATTATTGTTAAATGTCAGCGTTGAAATGATCTACCTGCAAAGTTTTAAATATTTCGGTTTACCTAGAAGAAAGTTACAACGACTTCTTTATGCACAAGTATTTTTGTCGCACCCTGTATAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38615</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>751020</contig_pos>
        <strand>+</strand>
        <context>ACAAAAAAGA[A/G]TTTTCTTCTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAACCGGTAAATTTTTTTCTTAAATAATTTCTGTTCGAACAAAAAAGA</left_flank>
        <right_flank>TTTTCTTCTATTCCAAAAAACCCGAATACCAAGACTGAAAACGTACTTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCATTAAACATAGTTACATGTAAGGTCAATTATTCAAATGTATAAGGAGTATGCAAGTGCGCGCGGCTGGACAGGCGCCGGCGTAATTGGCAAGACGTTTGAATGTAGAGGGTGTTGGATAAAGGTGTGTGATGGTTTTCTAGAAGTTGTGAGGAAAGAGGACGACGGAGGAGTGGAGAATCTGGAATTATAAAAATTTAGAAGATTACTATTAGTCGACAATTAATGTTCAGACTAGTGAAATTATCTACCGCATTCCCTCTAATAATGCCCCACCGAACTTCGAGCTCAATTATCTCGATTTCTGTTAACGATATCAAATATTTGTCAACTGCAAAAACTTTGATGATACTGTGATAAATAATTTATTAGTTGCCAAAATTTTGAGATGTTACACAGGTATCGAGATAATTTTTCAAAGTTGTCGGTTTGGGTGGGCTTCAGGAGGAAAACCGGTAAATTTTTTTCTTAAATAATTTCTGTTCGAACAAAAAAGAGTTTTCTTCTATTCCAAAAAACCCGAATACCAAGACTGAAAACGTACTTCATTGTTTCTATTTTTACGGTGTAAGGGATGGAGAAACTAAAAATTAGTGGTGAAAGAGATTAGTGATTATGTATAGGATTCACGACAACGCGGAAAAATAGATCATATCATAACCAAAACAAGTGTTGCTGCAAACTATATTTTTTGCAGGATTCCAATGAAAAATGGTTGTGAAGGATAGAGGAGAAAGACCTGACGACTCGCGTTTGAGTGGGTTGAAAAAGCAAGAGGCTTGAGATCAAAGAAATGGAATTTGTTGAAGTGTTGGAATAAATTCAAAAAAATGATGACATAAGCGGACCAATAAGTAACAGAGAAAGGTACAACTGACGAAATGAAGCAGTAATGATCAGTTTGTGTGTCGCCAAGCCGAAAAACACAATCATCAAAAAGTCTGCGATCATATTCTTGAAATTGAACCTTTAAAAAAGAAGAACATTCTGAAAGTAGT</canonical>
            <polymorphic>CATCATTAAACATAGTTACATGTAAGGTCAATTATTCAAATGTATAAGGAGTATGCAAGTGCGCGCGGCTGGACAGGCGCCGGCGTAATTGGCAAGACGTTTGAATGTAGAGGGTGTTGGATAAAGGTGTGTGATGGTTTTCTAGAAGTTGTGAGGAAAGAGGACGACGGAGGAGTGGAGAATCTGGAATTATAAAAATTTAGAAGATTACTATTAGTCGACAATTAATGTTCAGACTAGTGAAATTATCTACCGCATTCCCTCTAATAATGCCCCACCGAACTTCGAGCTCAATTATCTCGATTTCTGTTAACGATATCAAATATTTGTCAACTGCAAAAACTTTGATGATACTGTGATAAATAATTTATTAGTTGCCAAAATTTTGAGATGTTACACAGGTATCGAGATAATTTTTCAAAGTTGTCGGTTTGGGTGGGCTTCAGGAGGAAAACCGGTAAATTTTTTTCTTAAATAATTTCTGTTCGAACAAAAAAGARTTTTCTTCTATTCCAAAAAACCCGAATACCAAGACTGAAAACGTACTTCATTGTTTCTATTTTTACGGTGTAAGGGATGGAGAAACTAAAAATTAGTGGTGAAAGAGATTAGTGATTATGTATAGGATTCACGACAACGCGGAAAAATAGATCATATCATAACCAAAACAAGTGTTGCTGCAAACTATATTTTTTGCAGGATTCCAATGAAAAATGGTTGTGAAGGATAGAGGAGAAAGACCTGACGACTCGCGTTTGAGTGGGTTGAAAAAGCAAGAGGCTTGAGATCAAAGAAATGGAATTTGTTGAAGTGTTGGAATAAATTCAAAAAAATGATGACATAAGCGGACCAATAAGTAACAGAGAAAGGTACAACTGACGAAATGAAGCAGTAATGATCAGTTTGTGTGTCGCCAAGCCGAAAAACACAATCATCAAAAAGTCTGCGATCATATTCTTGAAATTGAACCTTTAAAAAAGAAGAACATTCTGAAAGTAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACCGCATTCCCTCTAATAAT</pcr_primer_p1>
		<pcr_primer_p2>AAATAGAAACAATGAAGTACGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>312</pcr_amplicon_size>
		<canonical_amplicon>TACCGCATTCCCTCTAATAATGCCCCACCGAACTTCGAGCTCAATTATCTCGATTTCTGTTAACGATATCAAATATTTGTCAACTGCAAAAACTTTGATGATACTGTGATAAATAATTTATTAGTTGCCAAAATTTTGAGATGTTACACAGGTATCGAGATAATTTTTCAAAGTTGTCGGTTTGGGTGGGCTTCAGGAGGAAAACCGGTAAATTTTTTTCTTAAATAATTTCTGTTCGAACAAAAAAGAGTTTTCTTCTATTCCAAAAAACCCGAATACCAAGACTGAAAACGTACTTCATTGTTTCTATTT</canonical_amplicon>
		<polymorphic_amplicon>TACCGCATTCCCTCTAATAATGCCCCACCGAACTTCGAGCTCAATTATCTCGATTTCTGTTAACGATATCAAATATTTGTCAACTGCAAAAACTTTGATGATACTGTGATAAATAATTTATTAGTTGCCAAAATTTTGAGATGTTACACAGGTATCGAGATAATTTTTCAAAGTTGTCGGTTTGGGTGGGCTTCAGGAGGAAAACCGGTAAATTTTTTTCTTAAATAATTTCTGTTCGAACAAAAAAGARTTTTCTTCTATTCCAAAAAACCCGAATACCAAGACTGAAAACGTACTTCATTGTTTCTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38616</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>754426</contig_pos>
        <strand>+</strand>
        <context>GACCTATCAA[C/T]TTTTTTCCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCGTGTTTTTCAATGTTATATTATATACATTTCTTCCTTGACCTATCAA</left_flank>
        <right_flank>TTTTTTCCGTCCCGCCTGTGTTCTGAAATTTGATTCCATTTTCTAAACTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACCGCCGCTTATGTCATCAATGCCGCCGCCTAATCCACTCAAAAGAAAAGGTGAGTTCACGTCAATTTTATGGATTGAACTGCCGCCAACTGGCTTTTAAATTTTGCATTCCTGACCAACAAAGAGAGCTTGAATTGTTCGAAAGTTTCTTGGCCGGCACAAATAATTGAATGGTTATTTACAAGAGGGGTCCCAACGTGGCCCGTGAAACTCGCTCTCTGAAAGTTTGAATATTCGAGATAGTGAGCAATAAATTCAAAATTTCTAACACAAATTATATATTAGATTGATCATAAAAAACTAATTTTCAGTTTTTTTTCTGCATTTCCAAATTTTCAGACGCACCCACCGAAGTCACTTATACCTGTTTCGAACCAAAGAACATCCGATTGATCGCAAAATTTGAAGATCAGCGTTTAAATCAATGAACAGAGGATTTACAATGTGCTTCGTGTTTTTCAATGTTATATTATATACATTTCTTCCTTGACCTATCAATTTTTTTCCGTCCCGCCTGTGTTCTGAAATTTGATTCCATTTTCTAAACTGTCCGCTTAAAGATCTATTTCTTTCTCTCTGATCTCAGTAGTTGCATTCTGTTCTGCTTCGCAAAAAAAAATCAGGCTTTTGTGTGAATAATATCATCTTCATTTTTAAATCGAATGACGCAATTCTGAATAAATGCTCATTGATTTTTTTTTCATAAAATAGATTCAGAAGAATAATCCCTCTTTAATAAAATTATACGTTCTTCTTTGGTCCAGCAGATAAAATGGGCGTGAATGTGTGGACATTCGAAAAGGCCTTGAGCGTGGAGAAACATTTTCGTCAATAATCCTGTGTGTTGAAGGCCCTCCAAATTGTTGATTTTTACTGAATTTTTCTTATTCTCGGTGATACTGTGATATAGGTTCATTCATCTATTGGAAACAAATTAAGTTTGACTGTGAATTTTTTTTTTCAATTTTAGAGACATGAGCAATAGCTATAAAAATTTTC</canonical>
            <polymorphic>CACCGCCGCTTATGTCATCAATGCCGCCGCCTAATCCACTCAAAAGAAAAGGTGAGTTCACGTCAATTTTATGGATTGAACTGCCGCCAACTGGCTTTTAAATTTTGCATTCCTGACCAACAAAGAGAGCTTGAATTGTTCGAAAGTTTCTTGGCCGGCACAAATAATTGAATGGTTATTTACAAGAGGGGTCCCAACGTGGCCCGTGAAACTCGCTCTCTGAAAGTTTGAATATTCGAGATAGTGAGCAATAAATTCAAAATTTCTAACACAAATTATATATTAGATTGATCATAAAAAACTAATTTTCAGTTTTTTTTCTGCATTTCCAAATTTTCAGACGCACCCACCGAAGTCACTTATACCTGTTTCGAACCAAAGAACATCCGATTGATCGCAAAATTTGAAGATCAGCGTTTAAATCAATGAACAGAGGATTTACAATGTGCTTCGTGTTTTTCAATGTTATATTATATACATTTCTTCCTTGACCTATCAAYTTTTTTCCGTCCCGCCTGTGTTCTGAAATTTGATTCCATTTTCTAAACTGTCCGCTTAAAGATCTATTTCTTTCTCTCTGATCTCAGTAGTTGCATTCTGTTCTGCTTCGCAAAAAAAAATCAGGCTTTTGTGTGAATAATATCATCTTCATTTTTAAATCGAATGACGCAATTCTGAATAAATGCTCATTGATTTTTTTTTCATAAAATAGATTCAGAAGAATAATCCCTCTTTAATAAAATTATACGTTCTTCTTTGGTCCAGCAGATAAAATGGGCGTGAATGTGTGGACATTCGAAAAGGCCTTGAGCGTGGAGAAACATTTTCGTCAATAATCCTGTGTGTTGAAGGCCCTCCAAATTGTTGATTTTTACTGAATTTTTCTTATTCTCGGTGATACTGTGATATAGGTTCATTCATCTATTGGAAACAAATTAAGTTTGACTGTGAATTTTTTTTTTCAATTTTAGAGACATGAGCAATAGCTATAAAAATTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>144 119 97 88 70 69 64 56 36 33 32 30 30 29 28 18 17 13 13 7 7</canonical_bands>
                <polymorphic_bands>144 126 119 88 70 69 64 56 36 33 32 30 30 28 18 17 13 13 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCAATGAACAGAGGATTTACA</pcr_primer_p1>
		<pcr_primer_p2>ATTCGATTTAAAAATGAAGATGA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATCAATGAACAGAGGATTTACAATGTGCTTCGTGTTTTTCAATGTTATATTATATACATTTCTTCCTTGACCTATCAATTTTTTTCCGTCCCGCCTGTGTTCTGAAATTTGATTCCATTTTCTAAACTGTCCGCTTAAAGATCTATTTCTTTCTCTCTGATCTCAGTAGTTGCATTCTGTTCTGCTTCGCAAAAAAAAATCAGGCTTTTGTGTGAATAATATCATCTTCATTTTTAAATCGAAT</canonical_amplicon>
		<polymorphic_amplicon>AATCAATGAACAGAGGATTTACAATGTGCTTCGTGTTTTTCAATGTTATATTATATACATTTCTTCCTTGACCTATCAAYTTTTTTCCGTCCCGCCTGTGTTCTGAAATTTGATTCCATTTTCTAAACTGTCCGCTTAAAGATCTATTTCTTTCTCTCTGATCTCAGTAGTTGCATTCTGTTCTGCTTCGCAAAAAAAAATCAGGCTTTTGTGTGAATAATATCATCTTCATTTTTAAATCGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38617</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>754538</contig_pos>
        <strand>+</strand>
        <context>TCTGCTTCGC[A/G]AAAAAAAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCTATTTCTTTCTCTCTGATCTCAGTAGTTGCATTCTGTTCTGCTTCGC</left_flank>
        <right_flank>AAAAAAAATCAGGCTTTTGTGTGAATAATATCATCTTCATTTTTAAATCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGACCAACAAAGAGAGCTTGAATTGTTCGAAAGTTTCTTGGCCGGCACAAATAATTGAATGGTTATTTACAAGAGGGGTCCCAACGTGGCCCGTGAAACTCGCTCTCTGAAAGTTTGAATATTCGAGATAGTGAGCAATAAATTCAAAATTTCTAACACAAATTATATATTAGATTGATCATAAAAAACTAATTTTCAGTTTTTTTTCTGCATTTCCAAATTTTCAGACGCACCCACCGAAGTCACTTATACCTGTTTCGAACCAAAGAACATCCGATTGATCGCAAAATTTGAAGATCAGCGTTTAAATCAATGAACAGAGGATTTACAATGTGCTTCGTGTTTTTCAATGTTATATTATATACATTTCTTCCTTGACCTATCAATTTTTTTCCGTCCCGCCTGTGTTCTGAAATTTGATTCCATTTTCTAAACTGTCCGCTTAAAGATCTATTTCTTTCTCTCTGATCTCAGTAGTTGCATTCTGTTCTGCTTCGCAAAAAAAAATCAGGCTTTTGTGTGAATAATATCATCTTCATTTTTAAATCGAATGACGCAATTCTGAATAAATGCTCATTGATTTTTTTTTCATAAAATAGATTCAGAAGAATAATCCCTCTTTAATAAAATTATACGTTCTTCTTTGGTCCAGCAGATAAAATGGGCGTGAATGTGTGGACATTCGAAAAGGCCTTGAGCGTGGAGAAACATTTTCGTCAATAATCCTGTGTGTTGAAGGCCCTCCAAATTGTTGATTTTTACTGAATTTTTCTTATTCTCGGTGATACTGTGATATAGGTTCATTCATCTATTGGAAACAAATTAAGTTTGACTGTGAATTTTTTTTTTCAATTTTAGAGACATGAGCAATAGCTATAAAAATTTTCAGAAAGTATGCAAATGCGTTCACGACAAGTAGATTAAAACAGCACTGTTGAAGTGGAATGGTTGGTTATTCAATAATTTTCTGTTAAGCTTACTTTAACTTATTCAGAGCAA</canonical>
            <polymorphic>CTGACCAACAAAGAGAGCTTGAATTGTTCGAAAGTTTCTTGGCCGGCACAAATAATTGAATGGTTATTTACAAGAGGGGTCCCAACGTGGCCCGTGAAACTCGCTCTCTGAAAGTTTGAATATTCGAGATAGTGAGCAATAAATTCAAAATTTCTAACACAAATTATATATTAGATTGATCATAAAAAACTAATTTTCAGTTTTTTTTCTGCATTTCCAAATTTTCAGACGCACCCACCGAAGTCACTTATACCTGTTTCGAACCAAAGAACATCCGATTGATCGCAAAATTTGAAGATCAGCGTTTAAATCAATGAACAGAGGATTTACAATGTGCTTCGTGTTTTTCAATGTTATATTATATACATTTCTTCCTTGACCTATCAATTTTTTTCCGTCCCGCCTGTGTTCTGAAATTTGATTCCATTTTCTAAACTGTCCGCTTAAAGATCTATTTCTTTCTCTCTGATCTCAGTAGTTGCATTCTGTTCTGCTTCGCRAAAAAAAATCAGGCTTTTGTGTGAATAATATCATCTTCATTTTTAAATCGAATGACGCAATTCTGAATAAATGCTCATTGATTTTTTTTTCATAAAATAGATTCAGAAGAATAATCCCTCTTTAATAAAATTATACGTTCTTCTTTGGTCCAGCAGATAAAATGGGCGTGAATGTGTGGACATTCGAAAAGGCCTTGAGCGTGGAGAAACATTTTCGTCAATAATCCTGTGTGTTGAAGGCCCTCCAAATTGTTGATTTTTACTGAATTTTTCTTATTCTCGGTGATACTGTGATATAGGTTCATTCATCTATTGGAAACAAATTAAGTTTGACTGTGAATTTTTTTTTTCAATTTTAGAGACATGAGCAATAGCTATAAAAATTTTCAGAAAGTATGCAAATGCGTTCACGACAAGTAGATTAAAACAGCACTGTTGAAGTGGAATGGTTGGTTATTCAATAATTTTCTGTTAAGCTTACTTTAACTTATTCAGAGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACATTTCTTCCTTGACCTATCA</pcr_primer_p1>
		<pcr_primer_p2>AGAGGGATTATTCTTCTGAATCT</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>TACATTTCTTCCTTGACCTATCAATTTTTTTCCGTCCCGCCTGTGTTCTGAAATTTGATTCCATTTTCTAAACTGTCCGCTTAAAGATCTATTTCTTTCTCTCTGATCTCAGTAGTTGCATTCTGTTCTGCTTCGCAAAAAAAAATCAGGCTTTTGTGTGAATAATATCATCTTCATTTTTAAATCGAATGACGCAATTCTGAATAAATGCTCATTGATTTTTTTTTCATAAAATAGATTCAGAAGAATAATCCCTCT</canonical_amplicon>
		<polymorphic_amplicon>TACATTTCTTCCTTGACCTATCAATTTTTTTCCGTCCCGCCTGTGTTCTGAAATTTGATTCCATTTTCTAAACTGTCCGCTTAAAGATCTATTTCTTTCTCTCTGATCTCAGTAGTTGCATTCTGTTCTGCTTCGCRAAAAAAAATCAGGCTTTTGTGTGAATAATATCATCTTCATTTTTAAATCGAATGACGCAATTCTGAATAAATGCTCATTGATTTTTTTTTCATAAAATAGATTCAGAAGAATAATCCCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38618</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>759604</contig_pos>
        <strand>+</strand>
        <context>RRCACGTTTC[A/G]AAAATTTAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGTAGCACGTTTC</left_flank>
        <right_flank>AAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCATTTTTTTAATGTGATGTTCATTCGTTCCGCAATTCTAGAACAGTTCCATAAAACTTTAGAAATGAAAAAAGAAAAAAAAACAAAAAAATGATTTCAGAAAAGAATAGATCAACTGAAATGAGCAAAAAACAAGAAACTGTATCACTTTGGAACATTTTGGGGACTTTCCCAACCATGACTCTGACACCTTCTGAAAACCCCCGTCTAATATTTAAACCCCCGTTAATATTTTAAACCCCCGTTAATTGTTTAAACCCCCGTTAAATCATAAAGAGCCTAAGGTTGCAACTATCACCTCTGAACCTACTAAAGTTTCAACTATCACCTCTGAACCTACTCCAGTTTCAACTATCAAATTTTCAGCTTCTGGAGGTGGAAAAACAAAAAATGACAGCATAGTTAGGGGCTCATATAGCACACTTGTTCAAATATTCAAGAAATTCTAAACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGTAGCACGTTTCAAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACGACGCATGTGTTGTAAAACTCAAAACACAGTTGTCCACTAGATGAAATTTTGAGAATTTTTTCAATCAGTACAAGAACATGAATACTTTCATTGTTACCTAAGTTTCTGAAAAGAACCAGCTTATTCTGAGAAAATTATCCTGTTTTTAGATCATGTTTAACTAAACTTGACACAGCAATCAACAACAAAAGTATTCAATATAATTTGTATTAGAAAAAAAATATATAATTTTCATGCGGGTAATAAAAATAATTATACATTATAAAGCACCAACAAAACTTATTTCATATTTTTTGCATACAACAATAATTAAAGAGAATTTAGGGAGGAATTAGAGTAGACAGAAAATAGTGCGAGATCAATTATTAATAATAGAATGGAAGATTGGCAGTAGTTGTCGCAGGATCAGCGATACTAGTTGC</canonical>
            <polymorphic>CCCATTTTTTTAATGTGATGTTCATTCGTTCCGCAATTCTAGAACAGTTCCATAAAACTTTAGAAATGAAAAAAGAAAAAAAAACAAAAAAATGATTTCAGAAAAGAATAGATCAACTGAAATGAGCAAAAAACAAGAAACTGTATCACTTTGGAACATTTTGGGGACTTTCCCAACCATGACTCTGACACCTTCTGAAAACCCCCGTCTAATATTTAAACCCCCGTTAATATTTTAAACCCCCGTTAATTGTTTAAACCCCCGTTAAATCATAAAGAGCCTAAGGTTGCAACTATCACCTCTGAACCTACTAAAGTTTCAACTATCACCTCTGAACCTACTCCAGTTTCAACTATCAAATTTTCAGCTTCTGGAGGTGGAAAAACAAAAAATGACAGCATAGTTAGGGGCTCATATAGCACACTTGTTCAAATATTCAAGAAATTCTAAACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGTAGCACGTTTCRAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACGACGCATGTGTTGTAAAACTCAAAACACAGTTGTCCACTAGATGAAATTTTGAGAATTTTTTCAATCAGTACAAGAACATGAATACTTTCATTGTTACCTAAGTTTCTGAAAAGAACCAGCTTATTCTGAGAAAATTATCCTGTTTTTAGATCATGTTTAACTAAACTTGACACAGCAATCAACAACAAAAGTATTCAATATAATTTGTATTAGAAAAAAAATATATAATTTTCATGCGGGTAATAAAAATAATTATACATTATAAAGCACCAACAAAACTTATTTCATATTTTTTGCATACAACAATAATTAAAGAGAATTTAGGGAGGAATTAGAGTAGACAGAAAATAGTGCGAGATCAATTATTAATAATAGAATGGAAGATTGGCAGTAGTTGTCGCAGGATCAGCGATACTAGTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTACTCCAGTTTCAACTATCAA</pcr_primer_p1>
		<pcr_primer_p2>CGTAAATTGTAATTGCTTAACTAAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CCTACTCCAGTTTCAACTATCAAATTTTCAGCTTCTGGAGGTGGAAAAACAAAAAATGACAGCATAGTTAGGGGCTCATATAGCACACTTGTTCAAATATTCAAGAAATTCTAAACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGTAGCACGTTTCAAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACG</canonical_amplicon>
		<polymorphic_amplicon>CCTACTCCAGTTTCAACTATCAAATTTTCAGCTTCTGGAGGTGGAAAAACAAAAAATGACAGCATAGTTAGGGGCTCATATAGCACACTTGTTCAAATATTCAAGAAATTCTAAACGCATTTCCGAAAACACCTTCCTTGTAAGTCATATTGTAGCACGTTTCRAAAATTTAAAAAAAAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38619</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>760117</contig_pos>
        <strand>+</strand>
        <context>GGGCGGCTCC[C/T]GCATTTTGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGCAGTAGTTGTCGCAGGATCAGCGATACTAGTTGCCGGGGCGGCTCC</left_flank>
        <right_flank>GCATTTTGAGCAGCGGTTGTTGGTGGCTGGTATGCAAAGTTAAATGCACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACGACGCATGTGTTGTAAAACTCAAAACACAGTTGTCCACTAGATGAAATTTTGAGAATTTTTTCAATCAGTACAAGAACATGAATACTTTCATTGTTACCTAAGTTTCTGAAAAGAACCAGCTTATTCTGAGAAAATTATCCTGTTTTTAGATCATGTTTAACTAAACTTGACACAGCAATCAACAACAAAAGTATTCAATATAATTTGTATTAGAAAAAAAATATATAATTTTCATGCGGGTAATAAAAATAATTATACATTATAAAGCACCAACAAAACTTATTTCATATTTTTTGCATACAACAATAATTAAAGAGAATTTAGGGAGGAATTAGAGTAGACAGAAAATAGTGCGAGATCAATTATTAATAATAGAATGGAAGATTGGCAGTAGTTGTCGCAGGATCAGCGATACTAGTTGCCGGGGCGGCTCCTGCATTTTGAGCAGCGGTTGTTGGTGGCTGGTATGCAAAGTTAAATGCACCATATGGAGTCTGGGTCATTGGCAACATTGCTGCTGACGTGGCGAAGCTTTGAGCCGGACGAGTAGCCAGATTGGGGTAGTATTGGTAAGCCTGTGATGCTGCTGGAACAGTTATAGAAGATGATGGTGTTGCTGGCGCTGAACTTTGGGAGGCGTTTGATGTCTTGGATTCAACTGATTTGGCACTCTTTGGTTTCCGCTTTGGTTGGAACTTGTAATCGGGATGATTCTGAAATGAACATAACATTGAAAAACGTGTTGCTCAATTCGTATTATATCATCATAAACAGTCCTGACACTTTCTATACTTTTCTTTGTTACAGGTTTTGGGAACGATGAATTTCCGGCACATACAGTTTTGCTCCTATTCTTATTTTTCTTACACCAAGAAAAAAATTCTGTTGCATTACATCCCCATTTTTGTATTTGGGTTTTAGATTTTCAACAAACA</canonical>
            <polymorphic>AAATCTGTTTCCTCGTACTGAATCCATCAAAACTTTTATATTTAGTTAAGCAATTACAATTTACGACGCATGTGTTGTAAAACTCAAAACACAGTTGTCCACTAGATGAAATTTTGAGAATTTTTTCAATCAGTACAAGAACATGAATACTTTCATTGTTACCTAAGTTTCTGAAAAGAACCAGCTTATTCTGAGAAAATTATCCTGTTTTTAGATCATGTTTAACTAAACTTGACACAGCAATCAACAACAAAAGTATTCAATATAATTTGTATTAGAAAAAAAATATATAATTTTCATGCGGGTAATAAAAATAATTATACATTATAAAGCACCAACAAAACTTATTTCATATTTTTTGCATACAACAATAATTAAAGAGAATTTAGGGAGGAATTAGAGTAGACAGAAAATAGTGCGAGATCAATTATTAATAATAGAATGGAAGATTGGCAGTAGTTGTCGCAGGATCAGCGATACTAGTTGCCGGGGCGGCTCCYGCATTTTGAGCAGCGGTTGTTGGTGGCTGGTATGCAAAGTTAAATGCACCATATGGAGTCTGGGTCATTGGCAACATTGCTGCTGACGTGGCGAAGCTTTGAGCCGGACGAGTAGCCAGATTGGGGTAGTATTGGTAAGCCTGTGATGCTGCTGGAACAGTTATAGAAGATGATGGTGTTGCTGGCGCTGAACTTTGGGAGGCGTTTGATGTCTTGGATTCAACTGATTTGGCACTCTTTGGTTTCCGCTTTGGTTGGAACTTGTAATCGGGATGATTCTGAAATGAACATAACATTGAAAAACGTGTTGCTCAATTCGTATTATATCATCATAAACAGTCCTGACACTTTCTATACTTTTCTTTGTTACAGGTTTTGGGAACGATGAATTTCCGGCACATACAGTTTTGCTCCTATTCTTATTTTTCTTACACCAAGAAAAAAATTCTGTTGCATTACATCCCCATTTTTGTATTTGGGTTTTAGATTTTCAACAAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>407 361 140 47 33 12</canonical_bands>
                <polymorphic_bands>407 361 173 47 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAGACAGAAAATAGTGCGAGAT</pcr_primer_p1>
		<pcr_primer_p2>CATCACAGGCTTACCAATACTAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTAGACAGAAAATAGTGCGAGATCAATTATTAATAATAGAATGGAAGATTGGCAGTAGTTGTCGCAGGATCAGCGATACTAGTTGCCGGGGCGGCTCCTGCATTTTGAGCAGCGGTTGTTGGTGGCTGGTATGCAAAGTTAAATGCACCATATGGAGTCTGGGTCATTGGCAACATTGCTGCTGACGTGGCGAAGCTTTGAGCCGGACGAGTAGCCAGATTGGGGTAGTATTGGTAAGCCTGTGATG</canonical_amplicon>
		<polymorphic_amplicon>GTAGACAGAAAATAGTGCGAGATCAATTATTAATAATAGAATGGAAGATTGGCAGTAGTTGTCGCAGGATCAGCGATACTAGTTGCCGGGGCGGCTCCYGCATTTTGAGCAGCGGTTGTTGGTGGCTGGTATGCAAAGTTAAATGCACCATATGGAGTCTGGGTCATTGGCAACATTGCTGCTGACGTGGCGAAGCTTTGAGCCGGACGAGTAGCCAGATTGGGGTAGTATTGGTAAGCCTGTGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38620</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>761267</contig_pos>
        <strand>+</strand>
        <context>CTTGAAACAC[A/C]GATGGTTTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCTCACATGCTATTTCCAATTCAAGGTTGCCCCCTGTCCCTTGAAACAC</left_flank>
        <right_flank>GATGGTTTCTTACAGATTTTTTACTTTTCCATTAATTCATGTCTTCTACT</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAATTTTTCCGGTATGTTTTCTTTCTCTGATTAATTTTTGCTTCATATTTGTACATTCGTGGTGCGTCTATCAAATTTTCGAAATGAGCTCTAGCATAATAGCTTCAAAATAAAACAGAAAGTGCCATTTCAGGAAATTGCGGGCAAGAGTTAGACATCAATTTTGGCAGATTGCATAGATGCGAGAGTCTAGCAAGGTTTGCGAATGGTTCTGATAGAAGAATGGCAAAACTAAACCGTCGCGTGCCCTCATTTTTCGCGACAATCTAGCGCCTCCAGGCGTCGTATTTTGGGATATGAATTGTGCGAGGGATAAGGCATGGGTTGAGCAAATTTCCCTGATTGTAGGCTTTTTGCCCACCGGTTGAGCGTCCTTGATCCCATGATTTAATGTCAAAAAACGATCTAACTTTTGAAAAGAAGCGTCTTTGTTCCTACCACTCTCCTCTTCTCACATGCTATTTCCAATTCAAGGTTGCCCCCTGTCCCTTGAAACACAGATGGTTTCTTACAGATTTTTTACTTTTCCATTAATTCATGTCTTCTACTTTTTCCTCACTAACCTTTTCAAAATCCGCTTTCAATTTGTGCGCCTCGTCAATATATGGCTTTTTATCCTCGTCAGTCATACCCTTCCAAACTTCTCCGAGCTGTTTGCTAATGTCGGACGGCTTCATTCCTGGCTGACCTTTCATCAATTCGCCTCTGCGCTTCTGACAAAACAGCAAAAATGGGTTCATTGGCCGTTTCACACGATCTGCTGAATCCTGACTAGGCCTCTGTTGTCGTTGCGAGAGATCGTACGGTTGATAGCCTCTCCCACCGGAACTTCCTTGAAGATCCTGGCTAGACATGGTGGCGTCTGCAAAAAAGAAATCATTAGAATCAACAATAATATGAAGATTGACAAAAAAGAAGTTGAAAGATAAATTCAAGAAAGGAAACACGGAGTAATCCAATGGAAAAATCATTTTGTAAGTTTTCGAATTATCTATGAGT</canonical>
            <polymorphic>GCAATTTTTCCGGTATGTTTTCTTTCTCTGATTAATTTTTGCTTCATATTTGTACATTCGTGGTGCGTCTATCAAATTTTCGAAATGAGCTCTAGCATAATAGCTTCAAAATAAAACAGAAAGTGCCATTTCAGGAAATTGCGGGCAAGAGTTAGACATCAATTTTGGCAGATTGCATAGATGCGAGAGTCTAGCAAGGTTTGCGAATGGTTCTGATAGAAGAATGGCAAAACTAAACCGTCGCGTGCCCTCATTTTTCGCGACAATCTAGCGCCTCCAGGCGTCGTATTTTGGGATATGAATTGTGCGAGGGATAAGGCATGGGTTGAGCAAATTTCCCTGATTGTAGGCTTTTTGCCCACCGGTTGAGCGTCCTTGATCCCATGATTTAATGTCAAAAAACGATCTAACTTTTGAAAAGAAGCGTCTTTGTTCCTACCACTCTCCTCTTCTCACATGCTATTTCCAATTCAAGGTTGCCCCCTGTCCCTTGAAACACMGATGGTTTCTTACAGATTTTTTACTTTTCCATTAATTCATGTCTTCTACTTTTTCCTCACTAACCTTTTCAAAATCCGCTTTCAATTTGTGCGCCTCGTCAATATATGGCTTTTTATCCTCGTCAGTCATACCCTTCCAAACTTCTCCGAGCTGTTTGCTAATGTCGGACGGCTTCATTCCTGGCTGACCTTTCATCAATTCGCCTCTGCGCTTCTGACAAAACAGCAAAAATGGGTTCATTGGCCGTTTCACACGATCTGCTGAATCCTGACTAGGCCTCTGTTGTCGTTGCGAGAGATCGTACGGTTGATAGCCTCTCCCACCGGAACTTCCTTGAAGATCCTGGCTAGACATGGTGGCGTCTGCAAAAAAGAAATCATTAGAATCAACAATAATATGAAGATTGACAAAAAAGAAGTTGAAAGATAAATTCAAGAAAGGAAACACGGAGTAATCCAATGGAAAAATCATTTTGTAAGTTTTCGAATTATCTATGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCATGATTTAATGTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GTATGACTGACGAGGATAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CCCATGATTTAATGTCAAAAAACGATCTAACTTTTGAAAAGAAGCGTCTTTGTTCCTACCACTCTCCTCTTCTCACATGCTATTTCCAATTCAAGGTTGCCCCCTGTCCCTTGAAACACAGATGGTTTCTTACAGATTTTTTACTTTTCCATTAATTCATGTCTTCTACTTTTTCCTCACTAACCTTTTCAAAATCCGCTTTCAATTTGTGCGCCTCGTCAATATATGGCTTTTTATCCTCGTCAGTCATAC</canonical_amplicon>
		<polymorphic_amplicon>CCCATGATTTAATGTCAAAAAACGATCTAACTTTTGAAAAGAAGCGTCTTTGTTCCTACCACTCTCCTCTTCTCACATGCTATTTCCAATTCAAGGTTGCCCCCTGTCCCTTGAAACACMGATGGTTTCTTACAGATTTTTTACTTTTCCATTAATTCATGTCTTCTACTTTTTCCTCACTAACCTTTTCAAAATCCGCTTTCAATTTGTGCGCCTCGTCAATATATGGCTTTTTATCCTCGTCAGTCATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38621</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>761289</contig_pos>
        <strand>+</strand>
        <context>ACAGATTTTT[C/T]ACTTTTCCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAGGTTGCCCCCTGTCCCTTGAAACACAGATGGTTTCTTACAGATTTTT</left_flank>
        <right_flank>ACTTTTCCATTAATTCATGTCTTCTACTTTTTCCTCACTAACCTTTTCAA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTCTGATTAATTTTTGCTTCATATTTGTACATTCGTGGTGCGTCTATCAAATTTTCGAAATGAGCTCTAGCATAATAGCTTCAAAATAAAACAGAAAGTGCCATTTCAGGAAATTGCGGGCAAGAGTTAGACATCAATTTTGGCAGATTGCATAGATGCGAGAGTCTAGCAAGGTTTGCGAATGGTTCTGATAGAAGAATGGCAAAACTAAACCGTCGCGTGCCCTCATTTTTCGCGACAATCTAGCGCCTCCAGGCGTCGTATTTTGGGATATGAATTGTGCGAGGGATAAGGCATGGGTTGAGCAAATTTCCCTGATTGTAGGCTTTTTGCCCACCGGTTGAGCGTCCTTGATCCCATGATTTAATGTCAAAAAACGATCTAACTTTTGAAAAGAAGCGTCTTTGTTCCTACCACTCTCCTCTTCTCACATGCTATTTCCAATTCAAGGTTGCCCCCTGTCCCTTGAAACACAGATGGTTTCTTACAGATTTTTTACTTTTCCATTAATTCATGTCTTCTACTTTTTCCTCACTAACCTTTTCAAAATCCGCTTTCAATTTGTGCGCCTCGTCAATATATGGCTTTTTATCCTCGTCAGTCATACCCTTCCAAACTTCTCCGAGCTGTTTGCTAATGTCGGACGGCTTCATTCCTGGCTGACCTTTCATCAATTCGCCTCTGCGCTTCTGACAAAACAGCAAAAATGGGTTCATTGGCCGTTTCACACGATCTGCTGAATCCTGACTAGGCCTCTGTTGTCGTTGCGAGAGATCGTACGGTTGATAGCCTCTCCCACCGGAACTTCCTTGAAGATCCTGGCTAGACATGGTGGCGTCTGCAAAAAAGAAATCATTAGAATCAACAATAATATGAAGATTGACAAAAAAGAAGTTGAAAGATAAATTCAAGAAAGGAAACACGGAGTAATCCAATGGAAAAATCATTTTGTAAGTTTTCGAATTATCTATGAGTTAAGTAGCGGGGGAATTATTAG</canonical>
            <polymorphic>TTTCTCTGATTAATTTTTGCTTCATATTTGTACATTCGTGGTGCGTCTATCAAATTTTCGAAATGAGCTCTAGCATAATAGCTTCAAAATAAAACAGAAAGTGCCATTTCAGGAAATTGCGGGCAAGAGTTAGACATCAATTTTGGCAGATTGCATAGATGCGAGAGTCTAGCAAGGTTTGCGAATGGTTCTGATAGAAGAATGGCAAAACTAAACCGTCGCGTGCCCTCATTTTTCGCGACAATCTAGCGCCTCCAGGCGTCGTATTTTGGGATATGAATTGTGCGAGGGATAAGGCATGGGTTGAGCAAATTTCCCTGATTGTAGGCTTTTTGCCCACCGGTTGAGCGTCCTTGATCCCATGATTTAATGTCAAAAAACGATCTAACTTTTGAAAAGAAGCGTCTTTGTTCCTACCACTCTCCTCTTCTCACATGCTATTTCCAATTCAAGGTTGCCCCCTGTCCCTTGAAACACAGATGGTTTCTTACAGATTTTTYACTTTTCCATTAATTCATGTCTTCTACTTTTTCCTCACTAACCTTTTCAAAATCCGCTTTCAATTTGTGCGCCTCGTCAATATATGGCTTTTTATCCTCGTCAGTCATACCCTTCCAAACTTCTCCGAGCTGTTTGCTAATGTCGGACGGCTTCATTCCTGGCTGACCTTTCATCAATTCGCCTCTGCGCTTCTGACAAAACAGCAAAAATGGGTTCATTGGCCGTTTCACACGATCTGCTGAATCCTGACTAGGCCTCTGTTGTCGTTGCGAGAGATCGTACGGTTGATAGCCTCTCCCACCGGAACTTCCTTGAAGATCCTGGCTAGACATGGTGGCGTCTGCAAAAAAGAAATCATTAGAATCAACAATAATATGAAGATTGACAAAAAAGAAGTTGAAAGATAAATTCAAGAAAGGAAACACGGAGTAATCCAATGGAAAAATCATTTTGTAAGTTTTCGAATTATCTATGAGTTAAGTAGCGGGGGAATTATTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCCATGATTTAATGTCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>GTATGACTGACGAGGATAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CCCATGATTTAATGTCAAAAAACGATCTAACTTTTGAAAAGAAGCGTCTTTGTTCCTACCACTCTCCTCTTCTCACATGCTATTTCCAATTCAAGGTTGCCCCCTGTCCCTTGAAACACAGATGGTTTCTTACAGATTTTTTACTTTTCCATTAATTCATGTCTTCTACTTTTTCCTCACTAACCTTTTCAAAATCCGCTTTCAATTTGTGCGCCTCGTCAATATATGGCTTTTTATCCTCGTCAGTCATAC</canonical_amplicon>
		<polymorphic_amplicon>CCCATGATTTAATGTCAAAAAACGATCTAACTTTTGAAAAGAAGCGTCTTTGTTCCTACCACTCTCCTCTTCTCACATGCTATTTCCAATTCAAGGTTGCCCCCTGTCCCTTGAAACACAGATGGTTTCTTACAGATTTTTYACTTTTCCATTAATTCATGTCTTCTACTTTTTCCTCACTAACCTTTTCAAAATCCGCTTTCAATTTGTGCGCCTCGTCAATATATGGCTTTTTATCCTCGTCAGTCATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38622</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>764367</contig_pos>
        <strand>+</strand>
        <context>AACGAAAGAA[C/T]ACCAGATTWW</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAA</left_flank>
        <right_flank>ACCAGATTTTTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAAGTAGCGCTTTCCAGTCTCAAAGAAGTAGATGCGTTTGAAATTCTGCATAATTATCTTTCATTCATTACTTTTCTTCAGTCGCCGCAGCGTACTGCGCTCAGTGAAGTGGCAGTAAGAGGGGAGAAGTGGCCCGGAGGGCAGACGGGAGAAGATTTGAACCCACCCGCTGTGTTTGTTCTATTGTTTTCTTTTGTTGACCTTACGCAGAAACAATAGTACTGTCTGATTCATTTTCGGACTCGTACCGTTCGGGTTTTTACGGCACACGCAAACGGTGGGGCTGCGGTTTAAACGAAATGTCTTTTTGAATTTTTAGAAGATTATGGGTAATTGTATCAGAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTACATCTAAAAACATACAATGGTACTCACAAAACGAGGAGCTCAAGTAAATGATGACGAGTGATTAGTGCCATCTGTCGGAGCATCCAGCTGTTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCG</canonical>
            <polymorphic>CAAAAGTAGCGCTTTCCAGTCTCAAAGAAGTAGATGCGTTTGAAATTCTGCATAATTATCTTTCATTCATTACTTTTCTTCAGTCGCCGCAGCGTACTGCGCTCAGTGAAGTGGCAGTAAGAGGGGAGAAGTGGCCCGGAGGGCAGACGGGAGAAGATTTGAACCCACCCGCTGTGTTTGTTCTATTGTTTTCTTTTGTTGACCTTACGCAGAAACAATAGTACTGTCTGATTCATTTTCGGACTCGTACCGTTCGGGTTTTTACGGCACACGCAAACGGTGGGGCTGCGGTTTAAACGAAATGTCTTTTTGAATTTTTAGAAGATTATGGGTAATTGTATCAGAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAAYACCAGATTTTTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTACATCTAAAAACATACAATGGTACTCACAAAACGAGGAGCTCAAGTAAATGATGACGAGTGATTAGTGCCATCTGTCGGAGCATCCAGCTGTTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>219 150 111 108 93 58 38 34 34 32 30 23 20 14 11 9 7 5 2 2</canonical_bands>
                <polymorphic_bands>330 150 108 93 58 38 34 34 32 30 23 20 14 11 9 7 5 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATCATTCTGACTGCTAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>GTAAAATTAGGGAAATCCAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTAC</canonical_amplicon>
		<polymorphic_amplicon>GAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAAYACCAGATTTTTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38623</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>764376</contig_pos>
        <strand>+</strand>
        <context>AYACCAGATT[A/T]WWWWWTAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATT</left_flank>
        <right_flank>TTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCTTTCCAGTCTCAAAGAAGTAGATGCGTTTGAAATTCTGCATAATTATCTTTCATTCATTACTTTTCTTCAGTCGCCGCAGCGTACTGCGCTCAGTGAAGTGGCAGTAAGAGGGGAGAAGTGGCCCGGAGGGCAGACGGGAGAAGATTTGAACCCACCCGCTGTGTTTGTTCTATTGTTTTCTTTTGTTGACCTTACGCAGAAACAATAGTACTGTCTGATTCATTTTCGGACTCGTACCGTTCGGGTTTTTACGGCACACGCAAACGGTGGGGCTGCGGTTTAAACGAAATGTCTTTTTGAATTTTTAGAAGATTATGGGTAATTGTATCAGAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTACATCTAAAAACATACAATGGTACTCACAAAACGAGGAGCTCAAGTAAATGATGACGAGTGATTAGTGCCATCTGTCGGAGCATCCAGCTGTTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAG</canonical>
            <polymorphic>CGCTTTCCAGTCTCAAAGAAGTAGATGCGTTTGAAATTCTGCATAATTATCTTTCATTCATTACTTTTCTTCAGTCGCCGCAGCGTACTGCGCTCAGTGAAGTGGCAGTAAGAGGGGAGAAGTGGCCCGGAGGGCAGACGGGAGAAGATTTGAACCCACCCGCTGTGTTTGTTCTATTGTTTTCTTTTGTTGACCTTACGCAGAAACAATAGTACTGTCTGATTCATTTTCGGACTCGTACCGTTCGGGTTTTTACGGCACACGCAAACGGTGGGGCTGCGGTTTAAACGAAATGTCTTTTTGAATTTTTAGAAGATTATGGGTAATTGTATCAGAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTWTTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTACATCTAAAAACATACAATGGTACTCACAAAACGAGGAGCTCAAGTAAATGATGACGAGTGATTAGTGCCATCTGTCGGAGCATCCAGCTGTTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATCATTCTGACTGCTAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>GTAAAATTAGGGAAATCCAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTAC</canonical_amplicon>
		<polymorphic_amplicon>GAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTWTTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38624</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>764377</contig_pos>
        <strand>+</strand>
        <context>YACCAGATTW[A/T]WWWWTAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTT</left_flank>
        <right_flank>TTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTTCCAGTCTCAAAGAAGTAGATGCGTTTGAAATTCTGCATAATTATCTTTCATTCATTACTTTTCTTCAGTCGCCGCAGCGTACTGCGCTCAGTGAAGTGGCAGTAAGAGGGGAGAAGTGGCCCGGAGGGCAGACGGGAGAAGATTTGAACCCACCCGCTGTGTTTGTTCTATTGTTTTCTTTTGTTGACCTTACGCAGAAACAATAGTACTGTCTGATTCATTTTCGGACTCGTACCGTTCGGGTTTTTACGGCACACGCAAACGGTGGGGCTGCGGTTTAAACGAAATGTCTTTTTGAATTTTTAGAAGATTATGGGTAATTGTATCAGAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTACATCTAAAAACATACAATGGTACTCACAAAACGAGGAGCTCAAGTAAATGATGACGAGTGATTAGTGCCATCTGTCGGAGCATCCAGCTGTTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGC</canonical>
            <polymorphic>GCTTTCCAGTCTCAAAGAAGTAGATGCGTTTGAAATTCTGCATAATTATCTTTCATTCATTACTTTTCTTCAGTCGCCGCAGCGTACTGCGCTCAGTGAAGTGGCAGTAAGAGGGGAGAAGTGGCCCGGAGGGCAGACGGGAGAAGATTTGAACCCACCCGCTGTGTTTGTTCTATTGTTTTCTTTTGTTGACCTTACGCAGAAACAATAGTACTGTCTGATTCATTTTCGGACTCGTACCGTTCGGGTTTTTACGGCACACGCAAACGGTGGGGCTGCGGTTTAAACGAAATGTCTTTTTGAATTTTTAGAAGATTATGGGTAATTGTATCAGAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTWTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTACATCTAAAAACATACAATGGTACTCACAAAACGAGGAGCTCAAGTAAATGATGACGAGTGATTAGTGCCATCTGTCGGAGCATCCAGCTGTTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATCATTCTGACTGCTAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>GTAAAATTAGGGAAATCCAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTAC</canonical_amplicon>
		<polymorphic_amplicon>GAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTWTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38625</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>764378</contig_pos>
        <strand>+</strand>
        <context>ACCAGATTWW[A/T]WWWTAAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTT</left_flank>
        <right_flank>TTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTCCAGTCTCAAAGAAGTAGATGCGTTTGAAATTCTGCATAATTATCTTTCATTCATTACTTTTCTTCAGTCGCCGCAGCGTACTGCGCTCAGTGAAGTGGCAGTAAGAGGGGAGAAGTGGCCCGGAGGGCAGACGGGAGAAGATTTGAACCCACCCGCTGTGTTTGTTCTATTGTTTTCTTTTGTTGACCTTACGCAGAAACAATAGTACTGTCTGATTCATTTTCGGACTCGTACCGTTCGGGTTTTTACGGCACACGCAAACGGTGGGGCTGCGGTTTAAACGAAATGTCTTTTTGAATTTTTAGAAGATTATGGGTAATTGTATCAGAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTACATCTAAAAACATACAATGGTACTCACAAAACGAGGAGCTCAAGTAAATGATGACGAGTGATTAGTGCCATCTGTCGGAGCATCCAGCTGTTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCC</canonical>
            <polymorphic>CTTTCCAGTCTCAAAGAAGTAGATGCGTTTGAAATTCTGCATAATTATCTTTCATTCATTACTTTTCTTCAGTCGCCGCAGCGTACTGCGCTCAGTGAAGTGGCAGTAAGAGGGGAGAAGTGGCCCGGAGGGCAGACGGGAGAAGATTTGAACCCACCCGCTGTGTTTGTTCTATTGTTTTCTTTTGTTGACCTTACGCAGAAACAATAGTACTGTCTGATTCATTTTCGGACTCGTACCGTTCGGGTTTTTACGGCACACGCAAACGGTGGGGCTGCGGTTTAAACGAAATGTCTTTTTGAATTTTTAGAAGATTATGGGTAATTGTATCAGAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTWTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTACATCTAAAAACATACAATGGTACTCACAAAACGAGGAGCTCAAGTAAATGATGACGAGTGATTAGTGCCATCTGTCGGAGCATCCAGCTGTTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATCATTCTGACTGCTAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>GTAAAATTAGGGAAATCCAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTAC</canonical_amplicon>
		<polymorphic_amplicon>GAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTWTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38626</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>764379</contig_pos>
        <strand>+</strand>
        <context>CCAGATTWWW[A/T]WWTAAAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTT</left_flank>
        <right_flank>TTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCAGTCTCAAAGAAGTAGATGCGTTTGAAATTCTGCATAATTATCTTTCATTCATTACTTTTCTTCAGTCGCCGCAGCGTACTGCGCTCAGTGAAGTGGCAGTAAGAGGGGAGAAGTGGCCCGGAGGGCAGACGGGAGAAGATTTGAACCCACCCGCTGTGTTTGTTCTATTGTTTTCTTTTGTTGACCTTACGCAGAAACAATAGTACTGTCTGATTCATTTTCGGACTCGTACCGTTCGGGTTTTTACGGCACACGCAAACGGTGGGGCTGCGGTTTAAACGAAATGTCTTTTTGAATTTTTAGAAGATTATGGGTAATTGTATCAGAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTACATCTAAAAACATACAATGGTACTCACAAAACGAGGAGCTCAAGTAAATGATGACGAGTGATTAGTGCCATCTGTCGGAGCATCCAGCTGTTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCA</canonical>
            <polymorphic>TTTCCAGTCTCAAAGAAGTAGATGCGTTTGAAATTCTGCATAATTATCTTTCATTCATTACTTTTCTTCAGTCGCCGCAGCGTACTGCGCTCAGTGAAGTGGCAGTAAGAGGGGAGAAGTGGCCCGGAGGGCAGACGGGAGAAGATTTGAACCCACCCGCTGTGTTTGTTCTATTGTTTTCTTTTGTTGACCTTACGCAGAAACAATAGTACTGTCTGATTCATTTTCGGACTCGTACCGTTCGGGTTTTTACGGCACACGCAAACGGTGGGGCTGCGGTTTAAACGAAATGTCTTTTTGAATTTTTAGAAGATTATGGGTAATTGTATCAGAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTTWTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTACATCTAAAAACATACAATGGTACTCACAAAACGAGGAGCTCAAGTAAATGATGACGAGTGATTAGTGCCATCTGTCGGAGCATCCAGCTGTTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATCATTCTGACTGCTAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>GTAAAATTAGGGAAATCCAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTAC</canonical_amplicon>
		<polymorphic_amplicon>GAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTTWTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38627</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>764380</contig_pos>
        <strand>+</strand>
        <context>CAGATTWWWW[A/T]WTAAAAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTTT</left_flank>
        <right_flank>TTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCAGTCTCAAAGAAGTAGATGCGTTTGAAATTCTGCATAATTATCTTTCATTCATTACTTTTCTTCAGTCGCCGCAGCGTACTGCGCTCAGTGAAGTGGCAGTAAGAGGGGAGAAGTGGCCCGGAGGGCAGACGGGAGAAGATTTGAACCCACCCGCTGTGTTTGTTCTATTGTTTTCTTTTGTTGACCTTACGCAGAAACAATAGTACTGTCTGATTCATTTTCGGACTCGTACCGTTCGGGTTTTTACGGCACACGCAAACGGTGGGGCTGCGGTTTAAACGAAATGTCTTTTTGAATTTTTAGAAGATTATGGGTAATTGTATCAGAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTACATCTAAAAACATACAATGGTACTCACAAAACGAGGAGCTCAAGTAAATGATGACGAGTGATTAGTGCCATCTGTCGGAGCATCCAGCTGTTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCAT</canonical>
            <polymorphic>TTCCAGTCTCAAAGAAGTAGATGCGTTTGAAATTCTGCATAATTATCTTTCATTCATTACTTTTCTTCAGTCGCCGCAGCGTACTGCGCTCAGTGAAGTGGCAGTAAGAGGGGAGAAGTGGCCCGGAGGGCAGACGGGAGAAGATTTGAACCCACCCGCTGTGTTTGTTCTATTGTTTTCTTTTGTTGACCTTACGCAGAAACAATAGTACTGTCTGATTCATTTTCGGACTCGTACCGTTCGGGTTTTTACGGCACACGCAAACGGTGGGGCTGCGGTTTAAACGAAATGTCTTTTTGAATTTTTAGAAGATTATGGGTAATTGTATCAGAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTTTWTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTACATCTAAAAACATACAATGGTACTCACAAAACGAGGAGCTCAAGTAAATGATGACGAGTGATTAGTGCCATCTGTCGGAGCATCCAGCTGTTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>498 281 149 72</canonical_bands>
                <polymorphic_bands>647 281 72</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATCATTCTGACTGCTAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>GTAAAATTAGGGAAATCCAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTAC</canonical_amplicon>
		<polymorphic_amplicon>GAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTTTWTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38628</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>764381</contig_pos>
        <strand>+</strand>
        <context>AGATTWWWWW[A/T]TAAAAATTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTTTT</left_flank>
        <right_flank>TAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAGTCTCAAAGAAGTAGATGCGTTTGAAATTCTGCATAATTATCTTTCATTCATTACTTTTCTTCAGTCGCCGCAGCGTACTGCGCTCAGTGAAGTGGCAGTAAGAGGGGAGAAGTGGCCCGGAGGGCAGACGGGAGAAGATTTGAACCCACCCGCTGTGTTTGTTCTATTGTTTTCTTTTGTTGACCTTACGCAGAAACAATAGTACTGTCTGATTCATTTTCGGACTCGTACCGTTCGGGTTTTTACGGCACACGCAAACGGTGGGGCTGCGGTTTAAACGAAATGTCTTTTTGAATTTTTAGAAGATTATGGGTAATTGTATCAGAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTACATCTAAAAACATACAATGGTACTCACAAAACGAGGAGCTCAAGTAAATGATGACGAGTGATTAGTGCCATCTGTCGGAGCATCCAGCTGTTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCATC</canonical>
            <polymorphic>TCCAGTCTCAAAGAAGTAGATGCGTTTGAAATTCTGCATAATTATCTTTCATTCATTACTTTTCTTCAGTCGCCGCAGCGTACTGCGCTCAGTGAAGTGGCAGTAAGAGGGGAGAAGTGGCCCGGAGGGCAGACGGGAGAAGATTTGAACCCACCCGCTGTGTTTGTTCTATTGTTTTCTTTTGTTGACCTTACGCAGAAACAATAGTACTGTCTGATTCATTTTCGGACTCGTACCGTTCGGGTTTTTACGGCACACGCAAACGGTGGGGCTGCGGTTTAAACGAAATGTCTTTTTGAATTTTTAGAAGATTATGGGTAATTGTATCAGAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTTTTWTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTACATCTAAAAACATACAATGGTACTCACAAAACGAGGAGCTCAAGTAAATGATGACGAGTGATTAGTGCCATCTGTCGGAGCATCCAGCTGTTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 280 149 72</canonical_bands>
                <polymorphic_bands>648 280 72</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>369 279 131 78 72 71</canonical_bands>
                <polymorphic_bands>447 279 131 72 71</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATCATTCTGACTGCTAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>GTAAAATTAGGGAAATCCAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTAC</canonical_amplicon>
		<polymorphic_amplicon>GAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTTTTWTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38629</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>764468</contig_pos>
        <strand>+</strand>
        <context>TAAAAACATA[C/T]AATGGTACTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGACTCAACCGAAGAACTTGGATTTCCCTAATTTTACATCTAAAAACATA</left_flank>
        <right_flank>AATGGTACTCACAAAACGAGGAGCTCAAGTAAATGATGACGAGTGATTAG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAGTGAAGTGGCAGTAAGAGGGGAGAAGTGGCCCGGAGGGCAGACGGGAGAAGATTTGAACCCACCCGCTGTGTTTGTTCTATTGTTTTCTTTTGTTGACCTTACGCAGAAACAATAGTACTGTCTGATTCATTTTCGGACTCGTACCGTTCGGGTTTTTACGGCACACGCAAACGGTGGGGCTGCGGTTTAAACGAAATGTCTTTTTGAATTTTTAGAAGATTATGGGTAATTGTATCAGAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTACATCTAAAAACATACAATGGTACTCACAAAACGAGGAGCTCAAGTAAATGATGACGAGTGATTAGTGCCATCTGTCGGAGCATCCAGCTGTTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAA</canonical>
            <polymorphic>CTCAGTGAAGTGGCAGTAAGAGGGGAGAAGTGGCCCGGAGGGCAGACGGGAGAAGATTTGAACCCACCCGCTGTGTTTGTTCTATTGTTTTCTTTTGTTGACCTTACGCAGAAACAATAGTACTGTCTGATTCATTTTCGGACTCGTACCGTTCGGGTTTTTACGGCACACGCAAACGGTGGGGCTGCGGTTTAAACGAAATGTCTTTTTGAATTTTTAGAAGATTATGGGTAATTGTATCAGAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTACATCTAAAAACATAYAATGGTACTCACAAAACGAGGAGCTCAAGTAAATGATGACGAGTGATTAGTGCCATCTGTCGGAGCATCCAGCTGTTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAATCGAATTTTGATATCTATTCT</pcr_primer_p1>
		<pcr_primer_p2>GAATTATTCTTTCCATTGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTACATCTAAAAACATACAATGGTACTCACAAAACGAGGAGCTCAAGTAAATGATGACGAGTGATTAGTGCCATCTGTCGGAGCATCCAGCTGTTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTC</canonical_amplicon>
		<polymorphic_amplicon>CAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTACATCTAAAAACATAYAATGGTACTCACAAAACGAGGAGCTCAAGTAAATGATGACGAGTGATTAGTGCCATCTGTCGGAGCATCCAGCTGTTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38630</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>764594</contig_pos>
        <strand>+</strand>
        <context>GCAAGTATTA[G/T]GTTTTATCTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTA</left_flank>
        <right_flank>GTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGATTCATTTTCGGACTCGTACCGTTCGGGTTTTTACGGCACACGCAAACGGTGGGGCTGCGGTTTAAACGAAATGTCTTTTTGAATTTTTAGAAGATTATGGGTAATTGTATCAGAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTACATCTAAAAACATACAATGGTACTCACAAAACGAGGAGCTCAAGTAAATGATGACGAGTGATTAGTGCCATCTGTCGGAGCATCCAGCTGTTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTTTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCT</canonical>
            <polymorphic>CTGATTCATTTTCGGACTCGTACCGTTCGGGTTTTTACGGCACACGCAAACGGTGGGGCTGCGGTTTAAACGAAATGTCTTTTTGAATTTTTAGAAGATTATGGGTAATTGTATCAGAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTACATCTAAAAACATACAATGGTACTCACAAAACGAGGAGCTCAAGTAAATGATGACGAGTGATTAGTGCCATCTGTCGGAGCATCCAGCTGTTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTAKGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTTTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGAGCTCAAGTAAATGATGAC</pcr_primer_p1>
		<pcr_primer_p2>TATCTGCATGAAAATGTGTATTC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AGGAGCTCAAGTAAATGATGACGAGTGATTAGTGCCATCTGTCGGAGCATCCAGCTGTTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATA</canonical_amplicon>
		<polymorphic_amplicon>AGGAGCTCAAGTAAATGATGACGAGTGATTAGTGCCATCTGTCGGAGCATCCAGCTGTTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTAKGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38631</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>764613</contig_pos>
        <strand>+</strand>
        <context>TAAACAAATT[G/T]CAAATTTGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATT</left_flank>
        <right_flank>CAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTACCGTTCGGGTTTTTACGGCACACGCAAACGGTGGGGCTGCGGTTTAAACGAAATGTCTTTTTGAATTTTTAGAAGATTATGGGTAATTGTATCAGAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTACATCTAAAAACATACAATGGTACTCACAAAACGAGGAGCTCAAGTAAATGATGACGAGTGATTAGTGCCATCTGTCGGAGCATCCAGCTGTTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTTTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCTACCAGGAGCCCTTATCTGC</canonical>
            <polymorphic>GTACCGTTCGGGTTTTTACGGCACACGCAAACGGTGGGGCTGCGGTTTAAACGAAATGTCTTTTTGAATTTTTAGAAGATTATGGGTAATTGTATCAGAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTACATCTAAAAACATACAATGGTACTCACAAAACGAGGAGCTCAAGTAAATGATGACGAGTGATTAGTGCCATCTGTCGGAGCATCCAGCTGTTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATTKCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTTTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCTACCAGGAGCCCTTATCTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>243 199 124 117 100 66 57 49 24 14 7</canonical_bands>
                <polymorphic_bands>243 206 124 117 100 66 57 49 24 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGAGCTCAAGTAAATGATGAC</pcr_primer_p1>
		<pcr_primer_p2>TATCTGCATGAAAATGTGTATTC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AGGAGCTCAAGTAAATGATGACGAGTGATTAGTGCCATCTGTCGGAGCATCCAGCTGTTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATA</canonical_amplicon>
		<polymorphic_amplicon>AGGAGCTCAAGTAAATGATGACGAGTGATTAGTGCCATCTGTCGGAGCATCCAGCTGTTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATTKCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38632</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>764682</contig_pos>
        <strand>+</strand>
        <context>ACCTCAGATG[C/T]TATGGAGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATG</left_flank>
        <right_flank>TATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTAGAAGATTATGGGTAATTGTATCAGAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTACATCTAAAAACATACAATGGTACTCACAAAACGAGGAGCTCAAGTAAATGATGACGAGTGATTAGTGCCATCTGTCGGAGCATCCAGCTGTTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTTTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCTACCAGGAGCCCTTATCTGCATTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATG</canonical>
            <polymorphic>TTTTAGAAGATTATGGGTAATTGTATCAGAATCATTCTGACTGCTAAGTTTAAAAATTTGATGAAAAAACTGACAAAAAATCAAGCTAGATGACTCATTTTTATTTTTTCCTCCTTTATCTTAAAATACGACGAAAGAGAAATATTTCAAATCGAATTTTGATATCTATTCTAAAACGAAAGAACACCAGATTTTTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTACATCTAAAAACATACAATGGTACTCACAAAACGAGGAGCTCAAGTAAATGATGACGAGTGATTAGTGCCATCTGTCGGAGCATCCAGCTGTTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGYTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTTTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCTACCAGGAGCCCTTATCTGCATTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGAACAATGGAAAGAATAAT</pcr_primer_p1>
		<pcr_primer_p2>ACGTACATGTGAGTTCTGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>218</pcr_amplicon_size>
		<canonical_amplicon>CCAGAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGT</canonical_amplicon>
		<polymorphic_amplicon>CCAGAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGYTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38633</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>764853</contig_pos>
        <strand>+</strand>
        <context>TGGCGAGATG[C/T]TGAAAACGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATG</left_flank>
        <right_flank>TGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGA</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAACGAAAGAACACCAGATTTTTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTACATCTAAAAACATACAATGGTACTCACAAAACGAGGAGCTCAAGTAAATGATGACGAGTGATTAGTGCCATCTGTCGGAGCATCCAGCTGTTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTTTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCTACCAGGAGCCCTTATCTGCATTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACGATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAG</canonical>
            <polymorphic>TAAAACGAAAGAACACCAGATTTTTTTTTAAAAATTTCTAGTAGATTTCTGACTCAAATTTTTCTGACTCAACCGAAGAACTTGGATTTCCCTAATTTTACATCTAAAAACATACAATGGTACTCACAAAACGAGGAGCTCAAGTAAATGATGACGAGTGATTAGTGCCATCTGTCGGAGCATCCAGCTGTTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGYTGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTTTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCTACCAGGAGCCCTTATCTGCATTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACGATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>495 306 199</canonical_bands>
                <polymorphic_bands>801 199</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTAACATTTTCAGAACTCACA</pcr_primer_p1>
		<pcr_primer_p2>AATTCTTACCCTCTCATGGTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATT</canonical_amplicon>
		<polymorphic_amplicon>AATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGYTGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38634</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>764995</contig_pos>
        <strand>+</strand>
        <context>GTAAGAATTT[C/T]TTATTAAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTT</left_flank>
        <right_flank>TTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTAAATGATGACGAGTGATTAGTGCCATCTGTCGGAGCATCCAGCTGTTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTTTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCTACCAGGAGCCCTTATCTGCATTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACGATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATACAAACCTCAAAAGAAGCAAAAACGAGAAAGAAAACCAATTAATGATATGTCAACCAGTTCGGAAAGCCTTGCAACCATGTTCTCAACTACGCCTAGCATAATTCCACCAGCTTTGCAAGTTTTCTACCCAAA</canonical>
            <polymorphic>AGTAAATGATGACGAGTGATTAGTGCCATCTGTCGGAGCATCCAGCTGTTGCCATAATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTYTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCTACCAGGAGCCCTTATCTGCATTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACGATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATACAAACCTCAAAAGAAGCAAAAACGAGAAAGAAAACCAATTAATGATATGTCAACCAGTTCGGAAAGCCTTGCAACCATGTTCTCAACTACGCCTAGCATAATTCCACCAGCTTTGCAAGTTTTCTACCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATCTGAAATTAGCAAACAAT</pcr_primer_p1>
		<pcr_primer_p2>CGTAGTAAGAAATGCAGATAAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTTTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCTACCAGGAGCCCTTATCTGCATTTCTTACTACG</canonical_amplicon>
		<polymorphic_amplicon>CCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTYTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCTACCAGGAGCCCTTATCTGCATTTCTTACTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38635</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>765050</contig_pos>
        <strand>+</strand>
        <context>TGATCGAGTT[A/G]GTCACTTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTT</left_flank>
        <right_flank>GTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCTACCAGG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTTTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCTACCAGGAGCCCTTATCTGCATTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACGATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATACAAACCTCAAAAGAAGCAAAAACGAGAAAGAAAACCAATTAATGATATGTCAACCAGTTCGGAAAGCCTTGCAACCATGTTCTCAACTACGCCTAGCATAATTCCACCAGCTTTGCAAGTTTTCTACCCAAATTTTCAAGGAGTGCCGACACAAACTTTTTCAACGTCTTCTTCTGGGAATTTCGGA</canonical>
            <polymorphic>AATGGCCCCCCAGAACAATGGAAAGAATAATTCGCAAGTATTAGGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTTTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTRGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCTACCAGGAGCCCTTATCTGCATTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACGATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATACAAACCTCAAAAGAAGCAAAAACGAGAAAGAAAACCAATTAATGATATGTCAACCAGTTCGGAAAGCCTTGCAACCATGTTCTCAACTACGCCTAGCATAATTCCACCAGCTTTGCAAGTTTTCTACCCAAATTTTCAAGGAGTGCCGACACAAACTTTTTCAACGTCTTCTTCTGGGAATTTCGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATCTGAAATTAGCAAACAAT</pcr_primer_p1>
		<pcr_primer_p2>CGTAGTAAGAAATGCAGATAAGG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTTTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCTACCAGGAGCCCTTATCTGCATTTCTTACTACG</canonical_amplicon>
		<polymorphic_amplicon>CCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTTTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTRGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCTACCAGGAGCCCTTATCTGCATTTCTTACTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38636</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>765088</contig_pos>
        <strand>+</strand>
        <context>GAATCGGTCT[A/T]ACTGCTACCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCT</left_flank>
        <right_flank>ACTGCTACCAGGAGCCCTTATCTGCATTTCTTACTACGCAAAACGTAATC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTAGGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTTTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCTACCAGGAGCCCTTATCTGCATTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACGATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATACAAACCTCAAAAGAAGCAAAAACGAGAAAGAAAACCAATTAATGATATGTCAACCAGTTCGGAAAGCCTTGCAACCATGTTCTCAACTACGCCTAGCATAATTCCACCAGCTTTGCAAGTTTTCTACCCAAATTTTCAAGGAGTGCCGACACAAACTTTTTCAACGTCTTCTTCTGGGAATTTCGGAAATTCAAACAATCCAGGAACCAGCAGAGGTCAAGATTC</canonical>
            <polymorphic>TATTAGGTTTTATCTAAACAAATTTCAAATTTGGTTTTATAAACAATCTTGATTGGAGTTCAACGCTTCAGGCAAGCTGACACACCTCAGATGTTATGGAGTTTTCGAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTTTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTWACTGCTACCAGGAGCCCTTATCTGCATTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACGATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATACAAACCTCAAAAGAAGCAAAAACGAGAAAGAAAACCAATTAATGATATGTCAACCAGTTCGGAAAGCCTTGCAACCATGTTCTCAACTACGCCTAGCATAATTCCACCAGCTTTGCAAGTTTTCTACCCAAATTTTCAAGGAGTGCCGACACAAACTTTTTCAACGTCTTCTTCTGGGAATTTCGGAAATTCAAACAATCCAGGAACCAGCAGAGGTCAAGATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGAACATGTCTGATGATGA</pcr_primer_p1>
		<pcr_primer_p2>AGATCTGCTTTCATTTTTGATTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTTTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCTACCAGGAGCCCTTATCTGCATTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCT</canonical_amplicon>
		<polymorphic_amplicon>GAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTTTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTWACTGCTACCAGGAGCCCTTATCTGCATTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38637</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>765194</contig_pos>
        <strand>+</strand>
        <context>TGTTTTAGAA[A/G]GGCTTGGATA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAA</left_flank>
        <right_flank>GGCTTGGATATACAGAGTAGCTTACGATAGAATCCCTAAAGTCGTACCGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTTTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCTACCAGGAGCCCTTATCTGCATTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACGATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATACAAACCTCAAAAGAAGCAAAAACGAGAAAGAAAACCAATTAATGATATGTCAACCAGTTCGGAAAGCCTTGCAACCATGTTCTCAACTACGCCTAGCATAATTCCACCAGCTTTGCAAGTTTTCTACCCAAATTTTCAAGGAGTGCCGACACAAACTTTTTCAACGTCTTCTTCTGGGAATTTCGGAAATTCAAACAATCCAGGAACCAGCAGAGGTCAAGATTCAAGATTCGGTTTTCACTAATTTTTCGCTAATTTTTTTTTAAATTTGTGATTTTTAAATTTGCATATCAACAATGAATCTCTTTTTAACGCCATCCGGGTCTTCTTA</canonical>
            <polymorphic>GAGGAAGCTGAATACACATTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTTTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCTACCAGGAGCCCTTATCTGCATTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAARGGCTTGGATATACAGAGTAGCTTACGATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATACAAACCTCAAAAGAAGCAAAAACGAGAAAGAAAACCAATTAATGATATGTCAACCAGTTCGGAAAGCCTTGCAACCATGTTCTCAACTACGCCTAGCATAATTCCACCAGCTTTGCAAGTTTTCTACCCAAATTTTCAAGGAGTGCCGACACAAACTTTTTCAACGTCTTCTTCTGGGAATTTCGGAAATTCAAACAATCCAGGAACCAGCAGAGGTCAAGATTCAAGATTCGGTTTTCACTAATTTTTCGCTAATTTTTTTTTAAATTTGTGATTTTTAAATTTGCATATCAACAATGAATCTCTTTTTAACGCCATCCGGGTCTTCTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTACTACGCAAAACGTAAT</pcr_primer_p1>
		<pcr_primer_p2>GTATTTGTAGTCTGGGTGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACGATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATAC</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAARGGCTTGGATATACAGAGTAGCTTACGATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38638</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>765212</contig_pos>
        <strand>+</strand>
        <context>ATATACAGAG[C/T]AGCTTACSAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAG</left_flank>
        <right_flank>AGCTTACGATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTTTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCTACCAGGAGCCCTTATCTGCATTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACGATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATACAAACCTCAAAAGAAGCAAAAACGAGAAAGAAAACCAATTAATGATATGTCAACCAGTTCGGAAAGCCTTGCAACCATGTTCTCAACTACGCCTAGCATAATTCCACCAGCTTTGCAAGTTTTCTACCCAAATTTTCAAGGAGTGCCGACACAAACTTTTTCAACGTCTTCTTCTGGGAATTTCGGAAATTCAAACAATCCAGGAACCAGCAGAGGTCAAGATTCAAGATTCGGTTTTCACTAATTTTTCGCTAATTTTTTTTTAAATTTGTGATTTTTAAATTTGCATATCAACAATGAATCTCTTTTTAACGCCATCCGGGTCTTCTTATTCCAAGAAAGTAGTTTG</canonical>
            <polymorphic>TTTTCATGCAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTTTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCTACCAGGAGCCCTTATCTGCATTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGYAGCTTACGATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATACAAACCTCAAAAGAAGCAAAAACGAGAAAGAAAACCAATTAATGATATGTCAACCAGTTCGGAAAGCCTTGCAACCATGTTCTCAACTACGCCTAGCATAATTCCACCAGCTTTGCAAGTTTTCTACCCAAATTTTCAAGGAGTGCCGACACAAACTTTTTCAACGTCTTCTTCTGGGAATTTCGGAAATTCAAACAATCCAGGAACCAGCAGAGGTCAAGATTCAAGATTCGGTTTTCACTAATTTTTCGCTAATTTTTTTTTAAATTTGTGATTTTTAAATTTGCATATCAACAATGAATCTCTTTTTAACGCCATCCGGGTCTTCTTATTCCAAGAAAGTAGTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTACTACGCAAAACGTAAT</pcr_primer_p1>
		<pcr_primer_p2>GTATTTGTAGTCTGGGTGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACGATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATAC</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGYAGCTTACGATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38639</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>765220</contig_pos>
        <strand>+</strand>
        <context>AGYAGCTTAC[C/G]ATAGAATCYC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTAC</left_flank>
        <right_flank>ATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTTTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCTACCAGGAGCCCTTATCTGCATTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACGATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATACAAACCTCAAAAGAAGCAAAAACGAGAAAGAAAACCAATTAATGATATGTCAACCAGTTCGGAAAGCCTTGCAACCATGTTCTCAACTACGCCTAGCATAATTCCACCAGCTTTGCAAGTTTTCTACCCAAATTTTCAAGGAGTGCCGACACAAACTTTTTCAACGTCTTCTTCTGGGAATTTCGGAAATTCAAACAATCCAGGAACCAGCAGAGGTCAAGATTCAAGATTCGGTTTTCACTAATTTTTCGCTAATTTTTTTTTAAATTTGTGATTTTTAAATTTGCATATCAACAATGAATCTCTTTTTAACGCCATCCGGGTCTTCTTATTCCAAGAAAGTAGTTTGCAGCTTTC</canonical>
            <polymorphic>CAGATAGTAATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTTTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCTACCAGGAGCCCTTATCTGCATTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACSATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATACAAACCTCAAAAGAAGCAAAAACGAGAAAGAAAACCAATTAATGATATGTCAACCAGTTCGGAAAGCCTTGCAACCATGTTCTCAACTACGCCTAGCATAATTCCACCAGCTTTGCAAGTTTTCTACCCAAATTTTCAAGGAGTGCCGACACAAACTTTTTCAACGTCTTCTTCTGGGAATTTCGGAAATTCAAACAATCCAGGAACCAGCAGAGGTCAAGATTCAAGATTCGGTTTTCACTAATTTTTCGCTAATTTTTTTTTAAATTTGTGATTTTTAAATTTGCATATCAACAATGAATCTCTTTTTAACGCCATCCGGGTCTTCTTATTCCAAGAAAGTAGTTTGCAGCTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTACTACGCAAAACGTAAT</pcr_primer_p1>
		<pcr_primer_p2>GTATTTGTAGTCTGGGTGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACGATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATAC</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACSATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38640</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>765229</contig_pos>
        <strand>+</strand>
        <context>CSATAGAATC[C/T]CTAAAGTCGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACGATAGAATC</left_flank>
        <right_flank>CTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTTTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCTACCAGGAGCCCTTATCTGCATTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACGATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATACAAACCTCAAAAGAAGCAAAAACGAGAAAGAAAACCAATTAATGATATGTCAACCAGTTCGGAAAGCCTTGCAACCATGTTCTCAACTACGCCTAGCATAATTCCACCAGCTTTGCAAGTTTTCTACCCAAATTTTCAAGGAGTGCCGACACAAACTTTTTCAACGTCTTCTTCTGGGAATTTCGGAAATTCAAACAATCCAGGAACCAGCAGAGGTCAAGATTCAAGATTCGGTTTTCACTAATTTTTCGCTAATTTTTTTTTAAATTTGTGATTTTTAAATTTGCATATCAACAATGAATCTCTTTTTAACGCCATCCGGGTCTTCTTATTCCAAGAAAGTAGTTTGCAGCTTTCAATGAAAAT</canonical>
            <polymorphic>ATGAATTTGATACTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTTTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCTACCAGGAGCCCTTATCTGCATTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACGATAGAATCYCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATACAAACCTCAAAAGAAGCAAAAACGAGAAAGAAAACCAATTAATGATATGTCAACCAGTTCGGAAAGCCTTGCAACCATGTTCTCAACTACGCCTAGCATAATTCCACCAGCTTTGCAAGTTTTCTACCCAAATTTTCAAGGAGTGCCGACACAAACTTTTTCAACGTCTTCTTCTGGGAATTTCGGAAATTCAAACAATCCAGGAACCAGCAGAGGTCAAGATTCAAGATTCGGTTTTCACTAATTTTTCGCTAATTTTTTTTTAAATTTGTGATTTTTAAATTTGCATATCAACAATGAATCTCTTTTTAACGCCATCCGGGTCTTCTTATTCCAAGAAAGTAGTTTGCAGCTTTCAATGAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTACTACGCAAAACGTAAT</pcr_primer_p1>
		<pcr_primer_p2>GTATTTGTAGTCTGGGTGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACGATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATAC</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACGATAGAATCYCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38641</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>765241</contig_pos>
        <strand>+</strand>
        <context>TAAAGTCGTA[C/T]CGTTCGAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAGGGCTTGGATATACAGAGTAGCTTACGATAGAATCCCTAAAGTCGTA</left_flank>
        <right_flank>CGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTTTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCTACCAGGAGCCCTTATCTGCATTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACGATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATACAAACCTCAAAAGAAGCAAAAACGAGAAAGAAAACCAATTAATGATATGTCAACCAGTTCGGAAAGCCTTGCAACCATGTTCTCAACTACGCCTAGCATAATTCCACCAGCTTTGCAAGTTTTCTACCCAAATTTTCAAGGAGTGCCGACACAAACTTTTTCAACGTCTTCTTCTGGGAATTTCGGAAATTCAAACAATCCAGGAACCAGCAGAGGTCAAGATTCAAGATTCGGTTTTCACTAATTTTTCGCTAATTTTTTTTTAAATTTGTGATTTTTAAATTTGCATATCAACAATGAATCTCTTTTTAACGCCATCCGGGTCTTCTTATTCCAAGAAAGTAGTTTGCAGCTTTCAATGAAAATTTATCGTTTAGT</canonical>
            <polymorphic>CTAAAAATTTAACATTTTCAGAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTTTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCTACCAGGAGCCCTTATCTGCATTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACGATAGAATCCCTAAAGTCGTAYCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATACAAACCTCAAAAGAAGCAAAAACGAGAAAGAAAACCAATTAATGATATGTCAACCAGTTCGGAAAGCCTTGCAACCATGTTCTCAACTACGCCTAGCATAATTCCACCAGCTTTGCAAGTTTTCTACCCAAATTTTCAAGGAGTGCCGACACAAACTTTTTCAACGTCTTCTTCTGGGAATTTCGGAAATTCAAACAATCCAGGAACCAGCAGAGGTCAAGATTCAAGATTCGGTTTTCACTAATTTTTCGCTAATTTTTTTTTAAATTTGTGATTTTTAAATTTGCATATCAACAATGAATCTCTTTTTAACGCCATCCGGGTCTTCTTATTCCAAGAAAGTAGTTTGCAGCTTTCAATGAAAATTTATCGTTTAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 466 32</canonical_bands>
                <polymorphic_bands>968 32</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTACTACGCAAAACGTAAT</pcr_primer_p1>
		<pcr_primer_p2>GTATTTGTAGTCTGGGTGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACGATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATAC</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACGATAGAATCCCTAAAGTCGTAYCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38642</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>765261</contig_pos>
        <strand>+</strand>
        <context>TTGCGAATTT[C/T]GTCGTATGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTAGCTTACGATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTT</left_flank>
        <right_flank>GTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTTTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCTACCAGGAGCCCTTATCTGCATTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACGATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATACAAACCTCAAAAGAAGCAAAAACGAGAAAGAAAACCAATTAATGATATGTCAACCAGTTCGGAAAGCCTTGCAACCATGTTCTCAACTACGCCTAGCATAATTCCACCAGCTTTGCAAGTTTTCTACCCAAATTTTCAAGGAGTGCCGACACAAACTTTTTCAACGTCTTCTTCTGGGAATTTCGGAAATTCAAACAATCCAGGAACCAGCAGAGGTCAAGATTCAAGATTCGGTTTTCACTAATTTTTCGCTAATTTTTTTTTAAATTTGTGATTTTTAAATTTGCATATCAACAATGAATCTCTTTTTAACGCCATCCGGGTCTTCTTATTCCAAGAAAGTAGTTTGCAGCTTTCAATGAAAATTTATCGTTTAGTTCAAGTTTCATGAAGCTGAT</canonical>
            <polymorphic>GAACTCACATGTACGTCGAAAATCTCCCGACCATGTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTTTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCTACCAGGAGCCCTTATCTGCATTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACGATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTYGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATACAAACCTCAAAAGAAGCAAAAACGAGAAAGAAAACCAATTAATGATATGTCAACCAGTTCGGAAAGCCTTGCAACCATGTTCTCAACTACGCCTAGCATAATTCCACCAGCTTTGCAAGTTTTCTACCCAAATTTTCAAGGAGTGCCGACACAAACTTTTTCAACGTCTTCTTCTGGGAATTTCGGAAATTCAAACAATCCAGGAACCAGCAGAGGTCAAGATTCAAGATTCGGTTTTCACTAATTTTTCGCTAATTTTTTTTTAAATTTGTGATTTTTAAATTTGCATATCAACAATGAATCTCTTTTTAACGCCATCCGGGTCTTCTTATTCCAAGAAAGTAGTTTGCAGCTTTCAATGAAAATTTATCGTTTAGTTCAAGTTTCATGAAGCTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTACTACGCAAAACGTAAT</pcr_primer_p1>
		<pcr_primer_p2>GTATTTGTAGTCTGGGTGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACGATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATAC</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACGATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTYGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38643</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>765295</contig_pos>
        <strand>+</strand>
        <context>AATATTTTCC[A/G]GCTTATTATG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCC</left_flank>
        <right_flank>GCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTTTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCTACCAGGAGCCCTTATCTGCATTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACGATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATACAAACCTCAAAAGAAGCAAAAACGAGAAAGAAAACCAATTAATGATATGTCAACCAGTTCGGAAAGCCTTGCAACCATGTTCTCAACTACGCCTAGCATAATTCCACCAGCTTTGCAAGTTTTCTACCCAAATTTTCAAGGAGTGCCGACACAAACTTTTTCAACGTCTTCTTCTGGGAATTTCGGAAATTCAAACAATCCAGGAACCAGCAGAGGTCAAGATTCAAGATTCGGTTTTCACTAATTTTTCGCTAATTTTTTTTTAAATTTGTGATTTTTAAATTTGCATATCAACAATGAATCTCTTTTTAACGCCATCCGGGTCTTCTTATTCCAAGAAAGTAGTTTGCAGCTTTCAATGAAAATTTATCGTTTAGTTCAAGTTTCATGAAGCTGATGGTAGCACAAAAAGATGAAACGAAATACTAGAAC</canonical>
            <polymorphic>GTGAAAAGGCCAATGAACCCTTTTATGATTTGGTGTCGATCGAAACGTGGCGAGATGCTGAAAACGCAGCCGGGAATGAAGCCATCTGAAATTAGCAAACAATTGGGAGAAGGTTGGAGGAACATGTCTGATGATGAGAAAAGGCCGTTTGTTGATGAAGCTGAACGACTGAAAATGGACCATGAGAGGGTAAGAATTTTTTATTAAGAAAAATATAGCAATGGTAAACATAAAAGTAAAATGATGATCGAGTTAGTCACTTTTCGTTGTCAGGTTTCTTCAGAATCGGTCTTACTGCTACCAGGAGCCCTTATCTGCATTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACGATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCRGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATACAAACCTCAAAAGAAGCAAAAACGAGAAAGAAAACCAATTAATGATATGTCAACCAGTTCGGAAAGCCTTGCAACCATGTTCTCAACTACGCCTAGCATAATTCCACCAGCTTTGCAAGTTTTCTACCCAAATTTTCAAGGAGTGCCGACACAAACTTTTTCAACGTCTTCTTCTGGGAATTTCGGAAATTCAAACAATCCAGGAACCAGCAGAGGTCAAGATTCAAGATTCGGTTTTCACTAATTTTTCGCTAATTTTTTTTTAAATTTGTGATTTTTAAATTTGCATATCAACAATGAATCTCTTTTTAACGCCATCCGGGTCTTCTTATTCCAAGAAAGTAGTTTGCAGCTTTCAATGAAAATTTATCGTTTAGTTCAAGTTTCATGAAGCTGATGGTAGCACAAAAAGATGAAACGAAATACTAGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>428 389 113 70</canonical_bands>
                <polymorphic_bands>817 113 70</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>242 147 133 94 82 63 60 44 41 39 18 16 12 9</canonical_bands>
                <polymorphic_bands>242 215 147 94 63 60 44 41 39 18 16 12 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTACTACGCAAAACGTAAT</pcr_primer_p1>
		<pcr_primer_p2>GTATTTGTAGTCTGGGTGGTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACGATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCGGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATAC</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTACTACGCAAAACGTAATCAAAAATGAAAGCAGATCTGTTTTAATCCTAGAATACCAAAAATGATGTTTTAGAAGGGCTTGGATATACAGAGTAGCTTACGATAGAATCCCTAAAGTCGTACCGTTCGAAATTGCGAATTTTGTCGTATGAAATTATGAACTTCCAATATTTTCCRGCTTATTATGGCGGCGAATCAATTCCATCATCGATTTTTTTTCTTCAGAACCACCCAGACTACAAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38644</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>800069</contig_pos>
        <strand>+</strand>
        <context>GATTTGATTT[C/T]TGAGGAAGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGTTCCGAGACTGGAGGATTGGAGCAAGTTCGCAGAGACGATTTGATTT</left_flank>
        <right_flank>TGAGGAAGGAATTTCATATCCATTCATTCTCATTGGCCCACACAAAGAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGCAACAGTATTTCTTCTGATTCGTCATGCTTTTCCAATCAAACTCCAAGAGATCTTATCCCATCCCTCATGTCACTTTCTCTGGATTCGCCAGTTTTCTCATCTCCATCTCCTCCAACCACACCAACCATCGAGCAGCAGCATCCAGAGTTCTTCCTGTCGTCATCTTCATTTGCCAATCGTAGAATCGTCATTGGATCGTTTGATAGAATGGTGTGCCCAATCAGTGGAATGCCATTGATTACAGTTTCCACGAGAAATGAGGAAAATATGATGTATAGCTACAACGTCCACAAGAATAAAGTCAAAAATCATCATTGCGAAGGATGTGGACCACGTACCCAAGAAACAAATCTTCAACCAGTCTACTCAGTTTTCTGTTACAAATTGAACCGGTACGTCATTTTCGCCAGAAACGTCAAAGCAAAGAAAGTTGAAAAGTTCGTGTTCTGTTCCGAGACTGGAGGATTGGAGCAAGTTCGCAGAGACGATTTGATTTTTGAGGAAGGAATTTCATATCCATTCATTCTCATTGGCCCACACAAAGAGTATATTCAATGGGAAGGAAAGCAGTGGAAGAAACAAAAAATGACCAAAAATGGATGGATTCCAATTCCACCTCGTCCAGTCAAAGGTCTGAAGCCGTTGGAGAATATTCCTCAAATCAACGTGCCACCACTTCCTGACCTGCTCGTCTTGTTTTGTCCACACTTGGCTGCTGAAATTCTGATGGTCAGAGAGAACGGGCGCGTCATTCGCACATGTGTCTACAACGAGCTCACCAAGAAATTTGAATACAACACAAGCTGTGCGAAATGCGCTACTAGTGTATCGTACAACAAGGCAGGGAACAAATCAACTTGGCATCAACGGAAACCGGACCAACAAAGACACCAGCAAAGATTTGTTCCTGAGCATAGACGTTTCGGAGTTGGGGCAACTCAGCATTAAACTGGTTCATCTTGGTAAGTGACTTTTCTTTCATGTTTTCTTTCAGTAT</canonical>
            <polymorphic>CGCAACAGTATTTCTTCTGATTCGTCATGCTTTTCCAATCAAACTCCAAGAGATCTTATCCCATCCCTCATGTCACTTTCTCTGGATTCGCCAGTTTTCTCATCTCCATCTCCTCCAACCACACCAACCATCGAGCAGCAGCATCCAGAGTTCTTCCTGTCGTCATCTTCATTTGCCAATCGTAGAATCGTCATTGGATCGTTTGATAGAATGGTGTGCCCAATCAGTGGAATGCCATTGATTACAGTTTCCACGAGAAATGAGGAAAATATGATGTATAGCTACAACGTCCACAAGAATAAAGTCAAAAATCATCATTGCGAAGGATGTGGACCACGTACCCAAGAAACAAATCTTCAACCAGTCTACTCAGTTTTCTGTTACAAATTGAACCGGTACGTCATTTTCGCCAGAAACGTCAAAGCAAAGAAAGTTGAAAAGTTCGTGTTCTGTTCCGAGACTGGAGGATTGGAGCAAGTTCGCAGAGACGATTTGATTTYTGAGGAAGGAATTTCATATCCATTCATTCTCATTGGCCCACACAAAGAGTATATTCAATGGGAAGGAAAGCAGTGGAAGAAACAAAAAATGACCAAAAATGGATGGATTCCAATTCCACCTCGTCCAGTCAAAGGTCTGAAGCCGTTGGAGAATATTCCTCAAATCAACGTGCCACCACTTCCTGACCTGCTCGTCTTGTTTTGTCCACACTTGGCTGCTGAAATTCTGATGGTCAGAGAGAACGGGCGCGTCATTCGCACATGTGTCTACAACGAGCTCACCAAGAAATTTGAATACAACACAAGCTGTGCGAAATGCGCTACTAGTGTATCGTACAACAAGGCAGGGAACAAATCAACTTGGCATCAACGGAAACCGGACCAACAAAGACACCAGCAAAGATTTGTTCCTGAGCATAGACGTTTCGGAGTTGGGGCAACTCAGCATTAAACTGGTTCATCTTGGTAAGTGACTTTTCTTTCATGTTTTCTTTCAGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAACAAATCTTCAACCAGTCTA</pcr_primer_p1>
		<pcr_primer_p2>TCCTTCCCATTGAATATACTCTT</pcr_primer_p2>
		<pcr_amplicon_size>222</pcr_amplicon_size>
		<canonical_amplicon>GAAACAAATCTTCAACCAGTCTACTCAGTTTTCTGTTACAAATTGAACCGGTACGTCATTTTCGCCAGAAACGTCAAAGCAAAGAAAGTTGAAAAGTTCGTGTTCTGTTCCGAGACTGGAGGATTGGAGCAAGTTCGCAGAGACGATTTGATTTTTGAGGAAGGAATTTCATATCCATTCATTCTCATTGGCCCACACAAAGAGTATATTCAATGGGAAGGA</canonical_amplicon>
		<polymorphic_amplicon>GAAACAAATCTTCAACCAGTCTACTCAGTTTTCTGTTACAAATTGAACCGGTACGTCATTTTCGCCAGAAACGTCAAAGCAAAGAAAGTTGAAAAGTTCGTGTTCTGTTCCGAGACTGGAGGATTGGAGCAAGTTCGCAGAGACGATTTGATTTYTGAGGAAGGAATTTCATATCCATTCATTCTCATTGGCCCACACAAAGAGTATATTCAATGGGAAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38645</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>800146</contig_pos>
        <strand>+</strand>
        <context>AAAGCAGTGG[A/G]ARAAACAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCTCATTGGCCCACACAAAGAGTATATTCAATGGGAAGGAAAGCAGTGG</left_flank>
        <right_flank>AGAAACAAAAAATGACCAAAAATGGATGGATTCCAATTCCACCTCGTCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTCTGGATTCGCCAGTTTTCTCATCTCCATCTCCTCCAACCACACCAACCATCGAGCAGCAGCATCCAGAGTTCTTCCTGTCGTCATCTTCATTTGCCAATCGTAGAATCGTCATTGGATCGTTTGATAGAATGGTGTGCCCAATCAGTGGAATGCCATTGATTACAGTTTCCACGAGAAATGAGGAAAATATGATGTATAGCTACAACGTCCACAAGAATAAAGTCAAAAATCATCATTGCGAAGGATGTGGACCACGTACCCAAGAAACAAATCTTCAACCAGTCTACTCAGTTTTCTGTTACAAATTGAACCGGTACGTCATTTTCGCCAGAAACGTCAAAGCAAAGAAAGTTGAAAAGTTCGTGTTCTGTTCCGAGACTGGAGGATTGGAGCAAGTTCGCAGAGACGATTTGATTTTTGAGGAAGGAATTTCATATCCATTCATTCTCATTGGCCCACACAAAGAGTATATTCAATGGGAAGGAAAGCAGTGGAAGAAACAAAAAATGACCAAAAATGGATGGATTCCAATTCCACCTCGTCCAGTCAAAGGTCTGAAGCCGTTGGAGAATATTCCTCAAATCAACGTGCCACCACTTCCTGACCTGCTCGTCTTGTTTTGTCCACACTTGGCTGCTGAAATTCTGATGGTCAGAGAGAACGGGCGCGTCATTCGCACATGTGTCTACAACGAGCTCACCAAGAAATTTGAATACAACACAAGCTGTGCGAAATGCGCTACTAGTGTATCGTACAACAAGGCAGGGAACAAATCAACTTGGCATCAACGGAAACCGGACCAACAAAGACACCAGCAAAGATTTGTTCCTGAGCATAGACGTTTCGGAGTTGGGGCAACTCAGCATTAAACTGGTTCATCTTGGTAAGTGACTTTTCTTTCATGTTTTCTTTCAGTATAACATCTAAACAAAGAGAAATTCATATTCATTCTTTCAGATCATCGACAGCTAATCTGCTGACTACTACCGATTTGT</canonical>
            <polymorphic>TTCTCTGGATTCGCCAGTTTTCTCATCTCCATCTCCTCCAACCACACCAACCATCGAGCAGCAGCATCCAGAGTTCTTCCTGTCGTCATCTTCATTTGCCAATCGTAGAATCGTCATTGGATCGTTTGATAGAATGGTGTGCCCAATCAGTGGAATGCCATTGATTACAGTTTCCACGAGAAATGAGGAAAATATGATGTATAGCTACAACGTCCACAAGAATAAAGTCAAAAATCATCATTGCGAAGGATGTGGACCACGTACCCAAGAAACAAATCTTCAACCAGTCTACTCAGTTTTCTGTTACAAATTGAACCGGTACGTCATTTTCGCCAGAAACGTCAAAGCAAAGAAAGTTGAAAAGTTCGTGTTCTGTTCCGAGACTGGAGGATTGGAGCAAGTTCGCAGAGACGATTTGATTTTTGAGGAAGGAATTTCATATCCATTCATTCTCATTGGCCCACACAAAGAGTATATTCAATGGGAAGGAAAGCAGTGGRAGAAACAAAAAATGACCAAAAATGGATGGATTCCAATTCCACCTCGTCCAGTCAAAGGTCTGAAGCCGTTGGAGAATATTCCTCAAATCAACGTGCCACCACTTCCTGACCTGCTCGTCTTGTTTTGTCCACACTTGGCTGCTGAAATTCTGATGGTCAGAGAGAACGGGCGCGTCATTCGCACATGTGTCTACAACGAGCTCACCAAGAAATTTGAATACAACACAAGCTGTGCGAAATGCGCTACTAGTGTATCGTACAACAAGGCAGGGAACAAATCAACTTGGCATCAACGGAAACCGGACCAACAAAGACACCAGCAAAGATTTGTTCCTGAGCATAGACGTTTCGGAGTTGGGGCAACTCAGCATTAAACTGGTTCATCTTGGTAAGTGACTTTTCTTTCATGTTTTCTTTCAGTATAACATCTAAACAAAGAGAAATTCATATTCATTCTTTCAGATCATCGACAGCTAATCTGCTGACTACTACCGATTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTCATATCCATTCATTCTCA</pcr_primer_p1>
		<pcr_primer_p2>TTCTCTCTGACCATCAGAATTT</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>AATTTCATATCCATTCATTCTCATTGGCCCACACAAAGAGTATATTCAATGGGAAGGAAAGCAGTGGAAGAAACAAAAAATGACCAAAAATGGATGGATTCCAATTCCACCTCGTCCAGTCAAAGGTCTGAAGCCGTTGGAGAATATTCCTCAAATCAACGTGCCACCACTTCCTGACCTGCTCGTCTTGTTTTGTCCACACTTGGCTGCTGAAATTCTGATGGTCAGAGAGAA</canonical_amplicon>
		<polymorphic_amplicon>AATTTCATATCCATTCATTCTCATTGGCCCACACAAAGAGTATATTCAATGGGAAGGAAAGCAGTGGRAGAAACAAAAAATGACCAAAAATGGATGGATTCCAATTCCACCTCGTCCAGTCAAAGGTCTGAAGCCGTTGGAGAATATTCCTCAAATCAACGTGCCACCACTTCCTGACCTGCTCGTCTTGTTTTGTCCACACTTGGCTGCTGAAATTCTGATGGTCAGAGAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38646</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>800615</contig_pos>
        <strand></strand>
        <context>TCAGATCATC[G/T]ACAGCTAATC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGTATAACATCTAAACAAAGAGAAATTCATATTCATTCTTTCAGATCATC</left_flank>
        <right_flank>ACAGCTAATCTGCTGACTACTACCGATTTGTGCACTCTTCACGTCATTAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGTATATTCAATGGGAAGGAAAGCAGTGGAAGAAACAAAAAATGACCAAAAATGGATGGATTCCAATTCCACCTCGTCCAGTCAAAGGTCTGAAGCCGTTGGAGAATATTCCTCAAATCAACGTGCCACCACTTCCTGACCTGCTCGTCTTGTTTTGTCCACACTTGGCTGCTGAAATTCTGATGGTCAGAGAGAACGGGCGCGTCATTCGCACATGTGTCTACAACGAGCTCACCAAGAAATTTGAATACAACACAAGCTGTGCGAAATGCGCTACTAGTGTATCGTACAACAAGGCAGGGAACAAATCAACTTGGCATCAACGGAAACCGGACCAACAAAGACACCAGCAAAGATTTGTTCCTGAGCATAGACGTTTCGGAGTTGGGGCAACTCAGCATTAAACTGGTTCATCTTGGTAAGTGACTTTTCTTTCATGTTTTCTTTCAGTATAACATCTAAACAAAGAGAAATTCATATTCATTCTTTCAGATCATCGACAGCTAATCTGCTGACTACTACCGATTTGTGCACTCTTCACGTCATTATTTCCTCTACCAGCATCTGATGCCCGCTAACTTTCTTCTTTTCACAATCTTTAACTTTTACAACTTTTTACTTTCTTTTGTTGTCTGTCTCGTTTATGTCTTTCAATTGTTGAGCTGTTTCAATCGTTTTAAGATTCGTCTAATACATTTTTTTTTGATTTTTGAGTTTCTTATCTTTTTCATCTAAAAAGAAGATCCGCCAAATCAGGTTTATTAAAATTGGAAACTTTAGAAAAATAGTGAAGGTATATTCAGTTCATCCATCGGAAAGTATAGAGAAAACCCCGCAGATGAAGTTTGAAACAACAAAGGTGGTTACTGTAGGTGGTACCAAGGATGAGAACTCGGAAAATGAGAACTGCTACATATGACAACTGGAAAATAAGAACTCAGTTTACCGGCTCTAACTTCCGGCTCAGGATTCAAATTTTTATGAAAAATATTTTCAAAA</canonical>
            <polymorphic>GAGTATATTCAATGGGAAGGAAAGCAGTGGAAGAAACAAAAAATGACCAAAAATGGATGGATTCCAATTCCACCTCGTCCAGTCAAAGGTCTGAAGCCGTTGGAGAATATTCCTCAAATCAACGTGCCACCACTTCCTGACCTGCTCGTCTTGTTTTGTCCACACTTGGCTGCTGAAATTCTGATGGTCAGAGAGAACGGGCGCGTCATTCGCACATGTGTCTACAACGAGCTCACCAAGAAATTTGAATACAACACAAGCTGTGCGAAATGCGCTACTAGTGTATCGTACAACAAGGCAGGGAACAAATCAACTTGGCATCAACGGAAACCGGACCAACAAAGACACCAGCAAAGATTTGTTCCTGAGCATAGACGTTTCGGAGTTGGGGCAACTCAGCATTAAACTGGTTCATCTTGGTAAGTGACTTTTCTTTCATGTTTTCTTTCAGTATAACATCTAAACAAAGAGAAATTCATATTCATTCTTTCAGATCATCKACAGCTAATCTGCTGACTACTACCGATTTGTGCACTCTTCACGTCATTATTTCCTCTACCAGCATCTGATGCCCGCTAACTTTCTTCTTTTCACAATCTTTAACTTTTACAACTTTTTACTTTCTTTTGTTGTCTGTCTCGTTTATGTCTTTCAATTGTTGAGCTGTTTCAATCGTTTTAAGATTCGTCTAATACATTTTTTTTTGATTTTTGAGTTTCTTATCTTTTTCATCTAAAAAGAAGATCCGCCAAATCAGGTTTATTAAAATTGGAAACTTTAGAAAAATAGTGAAGGTATATTCAGTTCATCCATCGGAAAGTATAGAGAAAACCCCGCAGATGAAGTTTGAAACAACAAAGGTGGTTACTGTAGGTGGTACCAAGGATGAGAACTCGGAAAATGAGAACTGCTACATATGACAACTGGAAAATAAGAACTCAGTTTACCGGCTCTAACTTCCGGCTCAGGATTCAAATTTTTATGAAAAATATTTTCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAAACTGGTTCATCTTGGTAAG</pcr_primer_p1>
		<pcr_primer_p2>AAGACATAAACGAGACAGACAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAAACTGGTTCATCTTGGTAAGTGACTTTTCTTTCATGTTTTCTTTCAGTATAACATCTAAACAAAGAGAAATTCATATTCATTCTTTCAGATCATCGACAGCTAATCTGCTGACTACTACCGATTTGTGCACTCTTCACGTCATTATTTCCTCTACCAGCATCTGATGCCCGCTAACTTTCTTCTTTTCACAATCTTTAACTTTTACAACTTTTTACTTTCTTTTGTTGTCTGTCTCGTTTATGTCTT</canonical_amplicon>
		<polymorphic_amplicon>TTAAACTGGTTCATCTTGGTAAGTGACTTTTCTTTCATGTTTTCTTTCAGTATAACATCTAAACAAAGAGAAATTCATATTCATTCTTTCAGATCATCKACAGCTAATCTGCTGACTACTACCGATTTGTGCACTCTTCACGTCATTATTTCCTCTACCAGCATCTGATGCCCGCTAACTTTCTTCTTTTCACAATCTTTAACTTTTACAACTTTTTACTTTCTTTTGTTGTCTGTCTCGTTTATGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38647</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>816867</contig_pos>
        <strand>+</strand>
        <context>CGGRCAGTCT[A/G]AAAATTATAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCCTTGATGACCAATTTTGGATCCATGGCGGAATCGCGGCGGGCAGTCT</left_flank>
        <right_flank>AAAATTATACAGTTTTAAATTAAATTCAATTAAATTTTGCAGGTTTTACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATGTCAAATCTGAGCCATAGTATAAGAACAACAAGCACAGAAATCATTCTCTTGATGACGGTGAGACGTTGAAGCTTTCTTTAAGACTCTAATGTCTGAATCAACAAATCCCAACTGTCTGTTCATCCTAGTTTTCTTTGTCACAGTAAAAGAAAGCTAAAAGGAGCGGAGAAAGGGGTCTGATACGAAGCTGAGACGGTTCTAACAAATAAACCAGATGTGAAGAACTCTAGAAACACGGCCAAAAACCATCTCGAATGTAGTCTGGGAGTAATTAGTAATCGACCAAATTAATAAGGACCTGATGCCCACCTATTAAGTGAAAGTTAGAAAAAATGGAATTTAATTATTCAGTAATTACAGTTTTATACAATTACCAAGAGAAAATGATTATCTGGGAATTTAGTTGGTGGGGTCAAAGATGATTTTATTTTTCTTGGTGCGTGATCCCTTGATGACCAATTTTGGATCCATGGCGGAATCGCGGCGGGCAGTCTGAAAATTATACAGTTTTAAATTAAATTCAATTAAATTTTGCAGGTTTTACAGAATAGAACGATTATTAATGACATTATTTAGTTGTGCAGGTTGTTCCTTGCCGCTGATAGATTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAGCGACTGGTGTGAAAAACCTGAACTATAGCATCTGTCAGAAAATAGTCAGCGTCCGTCTACAATATTGAGAAAAAGATTCTCACCTTACGAATCCCACTGCGATTCGAAGTCCCGACTGGAGCAACGGCCTTAGCACTCGCCTTTGAGGCAGATGGGGTGGCAGCCTGAAAATTATACACTT</canonical>
            <polymorphic>TCATGTCAAATCTGAGCCATAGTATAAGAACAACAAGCACAGAAATCATTCTCTTGATGACGGTGAGACGTTGAAGCTTTCTTTAAGACTCTAATGTCTGAATCAACAAATCCCAACTGTCTGTTCATCCTAGTTTTCTTTGTCACAGTAAAAGAAAGCTAAAAGGAGCGGAGAAAGGGGTCTGATACGAAGCTGAGACGGTTCTAACAAATAAACCAGATGTGAAGAACTCTAGAAACACGGCCAAAAACCATCTCGAATGTAGTCTGGGAGTAATTAGTAATCGACCAAATTAATAAGGACCTGATGCCCACCTATTAAGTGAAAGTTAGAAAAAATGGAATTTAATTATTCAGTAATTACAGTTTTATACAATTACCAAGAGAAAATGATTATCTGGGAATTTAGTTGGTGGGGTCAAAGATGATTTTATTTTTCTTGGTGCGTGATCCCTTGATGACCAATTTTGGATCCATGGCGGAATCGCGGCGGGCAGTCTRAAAATTATACAGTTTTAAATTAAATTCAATTAAATTTTGCAGGTTTTACAGAATAGAACGATTATTAATGACATTATTTAGTTGTGCAGGTTGTTCCTTGCCGCTGATAGATTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAGCGACTGGTGTGAAAAACCTGAACTATAGCATCTGTCAGAAAATAGTCAGCGTCCGTCTACAATATTGAGAAAAAGATTCTCACCTTACGAATCCCACTGCGATTCGAAGTCCCGACTGGAGCAACGGCCTTAGCACTCGCCTTTGAGGCAGATGGGGTGGCAGCCTGAAAATTATACACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>357 316 144 86 84 13</canonical_bands>
                <polymorphic_bands>673 144 86 84 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCACCTATTAAGTGAAAGTTAGA</pcr_primer_p1>
		<pcr_primer_p2>TCTATTCTGTAAAACCTGCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCCACCTATTAAGTGAAAGTTAGAAAAAATGGAATTTAATTATTCAGTAATTACAGTTTTATACAATTACCAAGAGAAAATGATTATCTGGGAATTTAGTTGGTGGGGTCAAAGATGATTTTATTTTTCTTGGTGCGTGATCCCTTGATGACCAATTTTGGATCCATGGCGGAATCGCGGCGGGCAGTCTGAAAATTATACAGTTTTAAATTAAATTCAATTAAATTTTGCAGGTTTTACAGAATAGA</canonical_amplicon>
		<polymorphic_amplicon>CCCACCTATTAAGTGAAAGTTAGAAAAAATGGAATTTAATTATTCAGTAATTACAGTTTTATACAATTACCAAGAGAAAATGATTATCTGGGAATTTAGTTGGTGGGGTCAAAGATGATTTTATTTTTCTTGGTGCGTGATCCCTTGATGACCAATTTTGGATCCATGGCGGAATCGCGGCGGGCAGTCTRAAAATTATACAGTTTTAAATTAAATTCAATTAAATTTTGCAGGTTTTACAGAATAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38648</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>816889</contig_pos>
        <strand>+</strand>
        <context>GTTTTAAATT[A/C]AATTCAATTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCCATGGCGGAATCGCGGCGGGCAGTCTGAAAATTATACAGTTTTAAATT</left_flank>
        <right_flank>AATTCAATTAAATTTTGCAGGTTTTACAGAATAGAACGATTATTAATGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATAAGAACAACAAGCACAGAAATCATTCTCTTGATGACGGTGAGACGTTGAAGCTTTCTTTAAGACTCTAATGTCTGAATCAACAAATCCCAACTGTCTGTTCATCCTAGTTTTCTTTGTCACAGTAAAAGAAAGCTAAAAGGAGCGGAGAAAGGGGTCTGATACGAAGCTGAGACGGTTCTAACAAATAAACCAGATGTGAAGAACTCTAGAAACACGGCCAAAAACCATCTCGAATGTAGTCTGGGAGTAATTAGTAATCGACCAAATTAATAAGGACCTGATGCCCACCTATTAAGTGAAAGTTAGAAAAAATGGAATTTAATTATTCAGTAATTACAGTTTTATACAATTACCAAGAGAAAATGATTATCTGGGAATTTAGTTGGTGGGGTCAAAGATGATTTTATTTTTCTTGGTGCGTGATCCCTTGATGACCAATTTTGGATCCATGGCGGAATCGCGGCGGGCAGTCTGAAAATTATACAGTTTTAAATTAAATTCAATTAAATTTTGCAGGTTTTACAGAATAGAACGATTATTAATGACATTATTTAGTTGTGCAGGTTGTTCCTTGCCGCTGATAGATTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAGCGACTGGTGTGAAAAACCTGAACTATAGCATCTGTCAGAAAATAGTCAGCGTCCGTCTACAATATTGAGAAAAAGATTCTCACCTTACGAATCCCACTGCGATTCGAAGTCCCGACTGGAGCAACGGCCTTAGCACTCGCCTTTGAGGCAGATGGGGTGGCAGCCTGAAAATTATACACTTGAGTTGTACAGAATCATAAGAT</canonical>
            <polymorphic>TATAAGAACAACAAGCACAGAAATCATTCTCTTGATGACGGTGAGACGTTGAAGCTTTCTTTAAGACTCTAATGTCTGAATCAACAAATCCCAACTGTCTGTTCATCCTAGTTTTCTTTGTCACAGTAAAAGAAAGCTAAAAGGAGCGGAGAAAGGGGTCTGATACGAAGCTGAGACGGTTCTAACAAATAAACCAGATGTGAAGAACTCTAGAAACACGGCCAAAAACCATCTCGAATGTAGTCTGGGAGTAATTAGTAATCGACCAAATTAATAAGGACCTGATGCCCACCTATTAAGTGAAAGTTAGAAAAAATGGAATTTAATTATTCAGTAATTACAGTTTTATACAATTACCAAGAGAAAATGATTATCTGGGAATTTAGTTGGTGGGGTCAAAGATGATTTTATTTTTCTTGGTGCGTGATCCCTTGATGACCAATTTTGGATCCATGGCGGAATCGCGGCGGGCAGTCTGAAAATTATACAGTTTTAAATTMAATTCAATTAAATTTTGCAGGTTTTACAGAATAGAACGATTATTAATGACATTATTTAGTTGTGCAGGTTGTTCCTTGCCGCTGATAGATTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAGCGACTGGTGTGAAAAACCTGAACTATAGCATCTGTCAGAAAATAGTCAGCGTCCGTCTACAATATTGAGAAAAAGATTCTCACCTTACGAATCCCACTGCGATTCGAAGTCCCGACTGGAGCAACGGCCTTAGCACTCGCCTTTGAGGCAGATGGGGTGGCAGCCTGAAAATTATACACTTGAGTTGTACAGAATCATAAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>319 291 149 121 60 50 10</canonical_bands>
                <polymorphic_bands>319 291 149 131 60 50</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>343 210 170 95 61 35 27 25 19 10 5</canonical_bands>
                <polymorphic_bands>343 210 170 95 61 35 27 25 19 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATGATTATCTGGGAATTTA</pcr_primer_p1>
		<pcr_primer_p2>GACAAAACGCAACTTATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAAATGATTATCTGGGAATTTAGTTGGTGGGGTCAAAGATGATTTTATTTTTCTTGGTGCGTGATCCCTTGATGACCAATTTTGGATCCATGGCGGAATCGCGGCGGGCAGTCTGAAAATTATACAGTTTTAAATTAAATTCAATTAAATTTTGCAGGTTTTACAGAATAGAACGATTATTAATGACATTATTTAGTTGTGCAGGTTGTTCCTTGCCGCTGATAGATTTCAATAAGTTGCGTTTTGTC</canonical_amplicon>
		<polymorphic_amplicon>GAAAATGATTATCTGGGAATTTAGTTGGTGGGGTCAAAGATGATTTTATTTTTCTTGGTGCGTGATCCCTTGATGACCAATTTTGGATCCATGGCGGAATCGCGGCGGGCAGTCTGAAAATTATACAGTTTTAAATTMAATTCAATTAAATTTTGCAGGTTTTACAGAATAGAACGATTATTAATGACATTATTTAGTTGTGCAGGTTGTTCCTTGCCGCTGATAGATTTCAATAAGTTGCGTTTTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38649</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>816948</contig_pos>
        <strand>+</strand>
        <context>ACATTATTTA[A/G]TTGTGCAGGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAATTTTGCAGGTTTTACAGAATAGAACGATTATTAATGACATTATTTA</left_flank>
        <right_flank>TTGTGCAGGTTGTTCCTTGCCGCTGATAGATTTCAATAAGTTGCGTTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTAAGACTCTAATGTCTGAATCAACAAATCCCAACTGTCTGTTCATCCTAGTTTTCTTTGTCACAGTAAAAGAAAGCTAAAAGGAGCGGAGAAAGGGGTCTGATACGAAGCTGAGACGGTTCTAACAAATAAACCAGATGTGAAGAACTCTAGAAACACGGCCAAAAACCATCTCGAATGTAGTCTGGGAGTAATTAGTAATCGACCAAATTAATAAGGACCTGATGCCCACCTATTAAGTGAAAGTTAGAAAAAATGGAATTTAATTATTCAGTAATTACAGTTTTATACAATTACCAAGAGAAAATGATTATCTGGGAATTTAGTTGGTGGGGTCAAAGATGATTTTATTTTTCTTGGTGCGTGATCCCTTGATGACCAATTTTGGATCCATGGCGGAATCGCGGCGGGCAGTCTGAAAATTATACAGTTTTAAATTAAATTCAATTAAATTTTGCAGGTTTTACAGAATAGAACGATTATTAATGACATTATTTAGTTGTGCAGGTTGTTCCTTGCCGCTGATAGATTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAGCGACTGGTGTGAAAAACCTGAACTATAGCATCTGTCAGAAAATAGTCAGCGTCCGTCTACAATATTGAGAAAAAGATTCTCACCTTACGAATCCCACTGCGATTCGAAGTCCCGACTGGAGCAACGGCCTTAGCACTCGCCTTTGAGGCAGATGGGGTGGCAGCCTGAAAATTATACACTTGAGTTGTACAGAATCATAAGATTGTTTCAAGTTTGTGGTTATTGACTTGCCTATATTCATTTTTTGGCTATTTACTTTCTG</canonical>
            <polymorphic>TTTAAGACTCTAATGTCTGAATCAACAAATCCCAACTGTCTGTTCATCCTAGTTTTCTTTGTCACAGTAAAAGAAAGCTAAAAGGAGCGGAGAAAGGGGTCTGATACGAAGCTGAGACGGTTCTAACAAATAAACCAGATGTGAAGAACTCTAGAAACACGGCCAAAAACCATCTCGAATGTAGTCTGGGAGTAATTAGTAATCGACCAAATTAATAAGGACCTGATGCCCACCTATTAAGTGAAAGTTAGAAAAAATGGAATTTAATTATTCAGTAATTACAGTTTTATACAATTACCAAGAGAAAATGATTATCTGGGAATTTAGTTGGTGGGGTCAAAGATGATTTTATTTTTCTTGGTGCGTGATCCCTTGATGACCAATTTTGGATCCATGGCGGAATCGCGGCGGGCAGTCTGAAAATTATACAGTTTTAAATTAAATTCAATTAAATTTTGCAGGTTTTACAGAATAGAACGATTATTAATGACATTATTTARTTGTGCAGGTTGTTCCTTGCCGCTGATAGATTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAGCGACTGGTGTGAAAAACCTGAACTATAGCATCTGTCAGAAAATAGTCAGCGTCCGTCTACAATATTGAGAAAAAGATTCTCACCTTACGAATCCCACTGCGATTCGAAGTCCCGACTGGAGCAACGGCCTTAGCACTCGCCTTTGAGGCAGATGGGGTGGCAGCCTGAAAATTATACACTTGAGTTGTACAGAATCATAAGATTGTTTCAAGTTTGTGGTTATTGACTTGCCTATATTCATTTTTTGGCTATTTACTTTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAATGATTATCTGGGAATTTA</pcr_primer_p1>
		<pcr_primer_p2>GACAAAACGCAACTTATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAAATGATTATCTGGGAATTTAGTTGGTGGGGTCAAAGATGATTTTATTTTTCTTGGTGCGTGATCCCTTGATGACCAATTTTGGATCCATGGCGGAATCGCGGCGGGCAGTCTGAAAATTATACAGTTTTAAATTAAATTCAATTAAATTTTGCAGGTTTTACAGAATAGAACGATTATTAATGACATTATTTAGTTGTGCAGGTTGTTCCTTGCCGCTGATAGATTTCAATAAGTTGCGTTTTGTC</canonical_amplicon>
		<polymorphic_amplicon>GAAAATGATTATCTGGGAATTTAGTTGGTGGGGTCAAAGATGATTTTATTTTTCTTGGTGCGTGATCCCTTGATGACCAATTTTGGATCCATGGCGGAATCGCGGCGGGCAGTCTGAAAATTATACAGTTTTAAATTAAATTCAATTAAATTTTGCAGGTTTTACAGAATAGAACGATTATTAATGACATTATTTARTTGTGCAGGTTGTTCCTTGCCGCTGATAGATTTCAATAAGTTGCGTTTTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38650</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>817042</contig_pos>
        <strand>+</strand>
        <context>ACACCCAAAT[G/T]ATCTTAAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAAT</left_flank>
        <right_flank>ATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGGGTCTGATACGAAGCTGAGACGGTTCTAACAAATAAACCAGATGTGAAGAACTCTAGAAACACGGCCAAAAACCATCTCGAATGTAGTCTGGGAGTAATTAGTAATCGACCAAATTAATAAGGACCTGATGCCCACCTATTAAGTGAAAGTTAGAAAAAATGGAATTTAATTATTCAGTAATTACAGTTTTATACAATTACCAAGAGAAAATGATTATCTGGGAATTTAGTTGGTGGGGTCAAAGATGATTTTATTTTTCTTGGTGCGTGATCCCTTGATGACCAATTTTGGATCCATGGCGGAATCGCGGCGGGCAGTCTGAAAATTATACAGTTTTAAATTAAATTCAATTAAATTTTGCAGGTTTTACAGAATAGAACGATTATTAATGACATTATTTAGTTGTGCAGGTTGTTCCTTGCCGCTGATAGATTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAGCGACTGGTGTGAAAAACCTGAACTATAGCATCTGTCAGAAAATAGTCAGCGTCCGTCTACAATATTGAGAAAAAGATTCTCACCTTACGAATCCCACTGCGATTCGAAGTCCCGACTGGAGCAACGGCCTTAGCACTCGCCTTTGAGGCAGATGGGGTGGCAGCCTGAAAATTATACACTTGAGTTGTACAGAATCATAAGATTGTTTCAAGTTTGTGGTTATTGACTTGCCTATATTCATTTTTTGGCTATTTACTTTCTGCAGATAGACTTAAAAATTTTGCATTTTCTCAGTTAGGGTGGATTTGAAAGGACTGTCTCGTGCATACAACTGGCCTAAAACTCATGTACGAGGT</canonical>
            <polymorphic>AGGGGTCTGATACGAAGCTGAGACGGTTCTAACAAATAAACCAGATGTGAAGAACTCTAGAAACACGGCCAAAAACCATCTCGAATGTAGTCTGGGAGTAATTAGTAATCGACCAAATTAATAAGGACCTGATGCCCACCTATTAAGTGAAAGTTAGAAAAAATGGAATTTAATTATTCAGTAATTACAGTTTTATACAATTACCAAGAGAAAATGATTATCTGGGAATTTAGTTGGTGGGGTCAAAGATGATTTTATTTTTCTTGGTGCGTGATCCCTTGATGACCAATTTTGGATCCATGGCGGAATCGCGGCGGGCAGTCTGAAAATTATACAGTTTTAAATTAAATTCAATTAAATTTTGCAGGTTTTACAGAATAGAACGATTATTAATGACATTATTTAGTTGTGCAGGTTGTTCCTTGCCGCTGATAGATTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATKATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAGCGACTGGTGTGAAAAACCTGAACTATAGCATCTGTCAGAAAATAGTCAGCGTCCGTCTACAATATTGAGAAAAAGATTCTCACCTTACGAATCCCACTGCGATTCGAAGTCCCGACTGGAGCAACGGCCTTAGCACTCGCCTTTGAGGCAGATGGGGTGGCAGCCTGAAAATTATACACTTGAGTTGTACAGAATCATAAGATTGTTTCAAGTTTGTGGTTATTGACTTGCCTATATTCATTTTTTGGCTATTTACTTTCTGCAGATAGACTTAAAAATTTTGCATTTTCTCAGTTAGGGTGGATTTGAAAGGACTGTCTCGTGCATACAACTGGCCTAAAACTCATGTACGAGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>501 272 205 22</canonical_bands>
                <polymorphic_bands>706 272 22</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAATAAGTTGCGTTTTGT</pcr_primer_p1>
		<pcr_primer_p2>CTGACAGATGCTATAGTTCAGGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAGCGACTGGTGTGAAAAACCTGAACTATAGCATCTGTCAG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATKATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAGCGACTGGTGTGAAAAACCTGAACTATAGCATCTGTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38651</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>817070</contig_pos>
        <strand>+</strand>
        <context>GAGGTAGTCT[A/G]TWCCAAATTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCT</left_flank>
        <right_flank>TACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAACAAATAAACCAGATGTGAAGAACTCTAGAAACACGGCCAAAAACCATCTCGAATGTAGTCTGGGAGTAATTAGTAATCGACCAAATTAATAAGGACCTGATGCCCACCTATTAAGTGAAAGTTAGAAAAAATGGAATTTAATTATTCAGTAATTACAGTTTTATACAATTACCAAGAGAAAATGATTATCTGGGAATTTAGTTGGTGGGGTCAAAGATGATTTTATTTTTCTTGGTGCGTGATCCCTTGATGACCAATTTTGGATCCATGGCGGAATCGCGGCGGGCAGTCTGAAAATTATACAGTTTTAAATTAAATTCAATTAAATTTTGCAGGTTTTACAGAATAGAACGATTATTAATGACATTATTTAGTTGTGCAGGTTGTTCCTTGCCGCTGATAGATTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAGCGACTGGTGTGAAAAACCTGAACTATAGCATCTGTCAGAAAATAGTCAGCGTCCGTCTACAATATTGAGAAAAAGATTCTCACCTTACGAATCCCACTGCGATTCGAAGTCCCGACTGGAGCAACGGCCTTAGCACTCGCCTTTGAGGCAGATGGGGTGGCAGCCTGAAAATTATACACTTGAGTTGTACAGAATCATAAGATTGTTTCAAGTTTGTGGTTATTGACTTGCCTATATTCATTTTTTGGCTATTTACTTTCTGCAGATAGACTTAAAAATTTTGCATTTTCTCAGTTAGGGTGGATTTGAAAGGACTGTCTCGTGCATACAACTGGCCTAAAACTCATGTACGAGGTAGTCTTTACCTCATTTTTAAGTGAAAGT</canonical>
            <polymorphic>CTAACAAATAAACCAGATGTGAAGAACTCTAGAAACACGGCCAAAAACCATCTCGAATGTAGTCTGGGAGTAATTAGTAATCGACCAAATTAATAAGGACCTGATGCCCACCTATTAAGTGAAAGTTAGAAAAAATGGAATTTAATTATTCAGTAATTACAGTTTTATACAATTACCAAGAGAAAATGATTATCTGGGAATTTAGTTGGTGGGGTCAAAGATGATTTTATTTTTCTTGGTGCGTGATCCCTTGATGACCAATTTTGGATCCATGGCGGAATCGCGGCGGGCAGTCTGAAAATTATACAGTTTTAAATTAAATTCAATTAAATTTTGCAGGTTTTACAGAATAGAACGATTATTAATGACATTATTTAGTTGTGCAGGTTGTTCCTTGCCGCTGATAGATTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTRTACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAGCGACTGGTGTGAAAAACCTGAACTATAGCATCTGTCAGAAAATAGTCAGCGTCCGTCTACAATATTGAGAAAAAGATTCTCACCTTACGAATCCCACTGCGATTCGAAGTCCCGACTGGAGCAACGGCCTTAGCACTCGCCTTTGAGGCAGATGGGGTGGCAGCCTGAAAATTATACACTTGAGTTGTACAGAATCATAAGATTGTTTCAAGTTTGTGGTTATTGACTTGCCTATATTCATTTTTTGGCTATTTACTTTCTGCAGATAGACTTAAAAATTTTGCATTTTCTCAGTTAGGGTGGATTTGAAAGGACTGTCTCGTGCATACAACTGGCCTAAAACTCATGTACGAGGTAGTCTTTACCTCATTTTTAAGTGAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAATAAGTTGCGTTTTGT</pcr_primer_p1>
		<pcr_primer_p2>CTGACAGATGCTATAGTTCAGGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAGCGACTGGTGTGAAAAACCTGAACTATAGCATCTGTCAG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTRTACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAGCGACTGGTGTGAAAAACCTGAACTATAGCATCTGTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38652</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>817072</contig_pos>
        <strand>+</strand>
        <context>GGTAGTCTRT[A/T]CCAAATTATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTAT</left_flank>
        <right_flank>CCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAAATAAACCAGATGTGAAGAACTCTAGAAACACGGCCAAAAACCATCTCGAATGTAGTCTGGGAGTAATTAGTAATCGACCAAATTAATAAGGACCTGATGCCCACCTATTAAGTGAAAGTTAGAAAAAATGGAATTTAATTATTCAGTAATTACAGTTTTATACAATTACCAAGAGAAAATGATTATCTGGGAATTTAGTTGGTGGGGTCAAAGATGATTTTATTTTTCTTGGTGCGTGATCCCTTGATGACCAATTTTGGATCCATGGCGGAATCGCGGCGGGCAGTCTGAAAATTATACAGTTTTAAATTAAATTCAATTAAATTTTGCAGGTTTTACAGAATAGAACGATTATTAATGACATTATTTAGTTGTGCAGGTTGTTCCTTGCCGCTGATAGATTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAGCGACTGGTGTGAAAAACCTGAACTATAGCATCTGTCAGAAAATAGTCAGCGTCCGTCTACAATATTGAGAAAAAGATTCTCACCTTACGAATCCCACTGCGATTCGAAGTCCCGACTGGAGCAACGGCCTTAGCACTCGCCTTTGAGGCAGATGGGGTGGCAGCCTGAAAATTATACACTTGAGTTGTACAGAATCATAAGATTGTTTCAAGTTTGTGGTTATTGACTTGCCTATATTCATTTTTTGGCTATTTACTTTCTGCAGATAGACTTAAAAATTTTGCATTTTCTCAGTTAGGGTGGATTTGAAAGGACTGTCTCGTGCATACAACTGGCCTAAAACTCATGTACGAGGTAGTCTTTACCTCATTTTTAAGTGAAAGTTA</canonical>
            <polymorphic>AACAAATAAACCAGATGTGAAGAACTCTAGAAACACGGCCAAAAACCATCTCGAATGTAGTCTGGGAGTAATTAGTAATCGACCAAATTAATAAGGACCTGATGCCCACCTATTAAGTGAAAGTTAGAAAAAATGGAATTTAATTATTCAGTAATTACAGTTTTATACAATTACCAAGAGAAAATGATTATCTGGGAATTTAGTTGGTGGGGTCAAAGATGATTTTATTTTTCTTGGTGCGTGATCCCTTGATGACCAATTTTGGATCCATGGCGGAATCGCGGCGGGCAGTCTGAAAATTATACAGTTTTAAATTAAATTCAATTAAATTTTGCAGGTTTTACAGAATAGAACGATTATTAATGACATTATTTAGTTGTGCAGGTTGTTCCTTGCCGCTGATAGATTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTATWCCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAGCGACTGGTGTGAAAAACCTGAACTATAGCATCTGTCAGAAAATAGTCAGCGTCCGTCTACAATATTGAGAAAAAGATTCTCACCTTACGAATCCCACTGCGATTCGAAGTCCCGACTGGAGCAACGGCCTTAGCACTCGCCTTTGAGGCAGATGGGGTGGCAGCCTGAAAATTATACACTTGAGTTGTACAGAATCATAAGATTGTTTCAAGTTTGTGGTTATTGACTTGCCTATATTCATTTTTTGGCTATTTACTTTCTGCAGATAGACTTAAAAATTTTGCATTTTCTCAGTTAGGGTGGATTTGAAAGGACTGTCTCGTGCATACAACTGGCCTAAAACTCATGTACGAGGTAGTCTTTACCTCATTTTTAAGTGAAAGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAATAAGTTGCGTTTTGT</pcr_primer_p1>
		<pcr_primer_p2>CTGACAGATGCTATAGTTCAGGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAGCGACTGGTGTGAAAAACCTGAACTATAGCATCTGTCAG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTATWCCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAGCGACTGGTGTGAAAAACCTGAACTATAGCATCTGTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38653</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>817093</contig_pos>
        <strand>+</strand>
        <context>CGGGGAGAGT[G/T]GTAAGAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGT</left_flank>
        <right_flank>GTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAA</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACTCTAGAAACACGGCCAAAAACCATCTCGAATGTAGTCTGGGAGTAATTAGTAATCGACCAAATTAATAAGGACCTGATGCCCACCTATTAAGTGAAAGTTAGAAAAAATGGAATTTAATTATTCAGTAATTACAGTTTTATACAATTACCAAGAGAAAATGATTATCTGGGAATTTAGTTGGTGGGGTCAAAGATGATTTTATTTTTCTTGGTGCGTGATCCCTTGATGACCAATTTTGGATCCATGGCGGAATCGCGGCGGGCAGTCTGAAAATTATACAGTTTTAAATTAAATTCAATTAAATTTTGCAGGTTTTACAGAATAGAACGATTATTAATGACATTATTTAGTTGTGCAGGTTGTTCCTTGCCGCTGATAGATTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAGCGACTGGTGTGAAAAACCTGAACTATAGCATCTGTCAGAAAATAGTCAGCGTCCGTCTACAATATTGAGAAAAAGATTCTCACCTTACGAATCCCACTGCGATTCGAAGTCCCGACTGGAGCAACGGCCTTAGCACTCGCCTTTGAGGCAGATGGGGTGGCAGCCTGAAAATTATACACTTGAGTTGTACAGAATCATAAGATTGTTTCAAGTTTGTGGTTATTGACTTGCCTATATTCATTTTTTGGCTATTTACTTTCTGCAGATAGACTTAAAAATTTTGCATTTTCTCAGTTAGGGTGGATTTGAAAGGACTGTCTCGTGCATACAACTGGCCTAAAACTCATGTACGAGGTAGTCTTTACCTCATTTTTAAGTGAAAGTTAGAAATAATGAGTTGACGTCTG</canonical>
            <polymorphic>GAACTCTAGAAACACGGCCAAAAACCATCTCGAATGTAGTCTGGGAGTAATTAGTAATCGACCAAATTAATAAGGACCTGATGCCCACCTATTAAGTGAAAGTTAGAAAAAATGGAATTTAATTATTCAGTAATTACAGTTTTATACAATTACCAAGAGAAAATGATTATCTGGGAATTTAGTTGGTGGGGTCAAAGATGATTTTATTTTTCTTGGTGCGTGATCCCTTGATGACCAATTTTGGATCCATGGCGGAATCGCGGCGGGCAGTCTGAAAATTATACAGTTTTAAATTAAATTCAATTAAATTTTGCAGGTTTTACAGAATAGAACGATTATTAATGACATTATTTAGTTGTGCAGGTTGTTCCTTGCCGCTGATAGATTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGTKGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAGCGACTGGTGTGAAAAACCTGAACTATAGCATCTGTCAGAAAATAGTCAGCGTCCGTCTACAATATTGAGAAAAAGATTCTCACCTTACGAATCCCACTGCGATTCGAAGTCCCGACTGGAGCAACGGCCTTAGCACTCGCCTTTGAGGCAGATGGGGTGGCAGCCTGAAAATTATACACTTGAGTTGTACAGAATCATAAGATTGTTTCAAGTTTGTGGTTATTGACTTGCCTATATTCATTTTTTGGCTATTTACTTTCTGCAGATAGACTTAAAAATTTTGCATTTTCTCAGTTAGGGTGGATTTGAAAGGACTGTCTCGTGCATACAACTGGCCTAAAACTCATGTACGAGGTAGTCTTTACCTCATTTTTAAGTGAAAGTTAGAAATAATGAGTTGACGTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAATAAGTTGCGTTTTGT</pcr_primer_p1>
		<pcr_primer_p2>CTGACAGATGCTATAGTTCAGGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAGCGACTGGTGTGAAAAACCTGAACTATAGCATCTGTCAG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGTKGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAGCGACTGGTGTGAAAAACCTGAACTATAGCATCTGTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38654</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>817136</contig_pos>
        <strand>+</strand>
        <context>GCAGGGTTTA[G/T]AATGAAATTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTA</left_flank>
        <right_flank>AATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAG</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGTAATTAGTAATCGACCAAATTAATAAGGACCTGATGCCCACCTATTAAGTGAAAGTTAGAAAAAATGGAATTTAATTATTCAGTAATTACAGTTTTATACAATTACCAAGAGAAAATGATTATCTGGGAATTTAGTTGGTGGGGTCAAAGATGATTTTATTTTTCTTGGTGCGTGATCCCTTGATGACCAATTTTGGATCCATGGCGGAATCGCGGCGGGCAGTCTGAAAATTATACAGTTTTAAATTAAATTCAATTAAATTTTGCAGGTTTTACAGAATAGAACGATTATTAATGACATTATTTAGTTGTGCAGGTTGTTCCTTGCCGCTGATAGATTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAGCGACTGGTGTGAAAAACCTGAACTATAGCATCTGTCAGAAAATAGTCAGCGTCCGTCTACAATATTGAGAAAAAGATTCTCACCTTACGAATCCCACTGCGATTCGAAGTCCCGACTGGAGCAACGGCCTTAGCACTCGCCTTTGAGGCAGATGGGGTGGCAGCCTGAAAATTATACACTTGAGTTGTACAGAATCATAAGATTGTTTCAAGTTTGTGGTTATTGACTTGCCTATATTCATTTTTTGGCTATTTACTTTCTGCAGATAGACTTAAAAATTTTGCATTTTCTCAGTTAGGGTGGATTTGAAAGGACTGTCTCGTGCATACAACTGGCCTAAAACTCATGTACGAGGTAGTCTTTACCTCATTTTTAAGTGAAAGTTAGAAATAATGAGTTGACGTCTGATAAAACTAGGACTAGCAGGTTTGAAGGAGAAATTAGCTCGGC</canonical>
            <polymorphic>GGAGTAATTAGTAATCGACCAAATTAATAAGGACCTGATGCCCACCTATTAAGTGAAAGTTAGAAAAAATGGAATTTAATTATTCAGTAATTACAGTTTTATACAATTACCAAGAGAAAATGATTATCTGGGAATTTAGTTGGTGGGGTCAAAGATGATTTTATTTTTCTTGGTGCGTGATCCCTTGATGACCAATTTTGGATCCATGGCGGAATCGCGGCGGGCAGTCTGAAAATTATACAGTTTTAAATTAAATTCAATTAAATTTTGCAGGTTTTACAGAATAGAACGATTATTAATGACATTATTTAGTTGTGCAGGTTGTTCCTTGCCGCTGATAGATTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAKAATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAGCGACTGGTGTGAAAAACCTGAACTATAGCATCTGTCAGAAAATAGTCAGCGTCCGTCTACAATATTGAGAAAAAGATTCTCACCTTACGAATCCCACTGCGATTCGAAGTCCCGACTGGAGCAACGGCCTTAGCACTCGCCTTTGAGGCAGATGGGGTGGCAGCCTGAAAATTATACACTTGAGTTGTACAGAATCATAAGATTGTTTCAAGTTTGTGGTTATTGACTTGCCTATATTCATTTTTTGGCTATTTACTTTCTGCAGATAGACTTAAAAATTTTGCATTTTCTCAGTTAGGGTGGATTTGAAAGGACTGTCTCGTGCATACAACTGGCCTAAAACTCATGTACGAGGTAGTCTTTACCTCATTTTTAAGTGAAAGTTAGAAATAATGAGTTGACGTCTGATAAAACTAGGACTAGCAGGTTTGAAGGAGAAATTAGCTCGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAATAAGTTGCGTTTTGT</pcr_primer_p1>
		<pcr_primer_p2>CTGACAGATGCTATAGTTCAGGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAGAATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAGCGACTGGTGTGAAAAACCTGAACTATAGCATCTGTCAG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAATAAGTTGCGTTTTGTCAGTTTGGGTGGTTTTCGAGGAAAATGTTAATACACCCAAATGATCTTAAATTTCTGTACGAGGTAGTCTATACCAAATTATCCGGGGAGAGTTGTAAGAATTTAGGCCAGGTCAAACGGAGGCTAGCAGGGTTTAKAATGAAATTGGCTTAGAAAAATGCTAGGCACTATTTCAGGAAGATTTCAGCGACTGGTGTGAAAAACCTGAACTATAGCATCTGTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38655</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>818703</contig_pos>
        <strand>+</strand>
        <context>TTGGTCGAAG[A/C]CTTAGTRGCK</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAG</left_flank>
        <right_flank>CTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCCAGCGTCCCTCTATGACATTAAGAAGAAAGAAAGTTCTTACTTTACGATCAACATGACTTTTGCCGCGTCTGGTGGTGGCGGCGGATCCCTTTCCTCCACTTGGCGGGGCCTGAAATCACTTAATTTCGTAGAAAGAACGTTTTGAAACTTCTTAAGTCCTCTATGGTTTCATTTTAATATTACCTATGTATGTTTAAATTCAAATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAA</canonical>
            <polymorphic>TGCCAGCGTCCCTCTATGACATTAAGAAGAAAGAAAGTTCTTACTTTACGATCAACATGACTTTTGCCGCGTCTGGTGGTGGCGGCGGATCCCTTTCCTCCACTTGGCGGGGCCTGAAATCACTTAATTTCGTAGAAAGAACGTTTTGAAACTTCTTAAGTCCTCTATGGTTTCATTTTAATATTACCTATGTATGTTTAAATTCAAATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGMCTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATAGCAAAGTTTCAAGGTG</pcr_primer_p1>
		<pcr_primer_p2>CGACCAAAAAGGCTATTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCG</canonical_amplicon>
		<polymorphic_amplicon>GAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGMCTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38656</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>818710</contig_pos>
        <strand>+</strand>
        <context>AAGMCTTAGT[A/G]GCKTTTTTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGT</left_flank>
        <right_flank>GCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCCCTCTATGACATTAAGAAGAAAGAAAGTTCTTACTTTACGATCAACATGACTTTTGCCGCGTCTGGTGGTGGCGGCGGATCCCTTTCCTCCACTTGGCGGGGCCTGAAATCACTTAATTTCGTAGAAAGAACGTTTTGAAACTTCTTAAGTCCTCTATGGTTTCATTTTAATATTACCTATGTATGTTTAAATTCAAATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAATCGGACG</canonical>
            <polymorphic>GTCCCTCTATGACATTAAGAAGAAAGAAAGTTCTTACTTTACGATCAACATGACTTTTGCCGCGTCTGGTGGTGGCGGCGGATCCCTTTCCTCCACTTGGCGGGGCCTGAAATCACTTAATTTCGTAGAAAGAACGTTTTGAAACTTCTTAAGTCCTCTATGGTTTCATTTTAATATTACCTATGTATGTTTAAATTCAAATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTRGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAATCGGACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>133 105 72 71 65 60 53 51 48 48 37 35 30 28 25 22 21 20 20 14 11 7 7 5 4 3 3 2</canonical_bands>
                <polymorphic_bands>181 105 72 71 65 60 53 51 48 37 35 30 28 25 22 21 20 20 14 11 7 7 5 4 3 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATAGCAAAGTTTCAAGGTG</pcr_primer_p1>
		<pcr_primer_p2>CGACCAAAAAGGCTATTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCG</canonical_amplicon>
		<polymorphic_amplicon>GAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTRGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38657</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>818727</contig_pos>
        <strand>+</strand>
        <context>TTGGTCGAAG[A/G]STTAGTRGCS</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAG</left_flank>
        <right_flank>GTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAGAAAGAAAGTTCTTACTTTACGATCAACATGACTTTTGCCGCGTCTGGTGGTGGCGGCGGATCCCTTTCCTCCACTTGGCGGGGCCTGAAATCACTTAATTTCGTAGAAAGAACGTTTTGAAACTTCTTAAGTCCTCTATGGTTTCATTTTAATATTACCTATGTATGTTTAAATTCAAATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAATCGGACGGATCGTATGGGACAGGC</canonical>
            <polymorphic>AGAAGAAAGAAAGTTCTTACTTTACGATCAACATGACTTTTGCCGCGTCTGGTGGTGGCGGCGGATCCCTTTCCTCCACTTGGCGGGGCCTGAAATCACTTAATTTCGTAGAAAGAACGTTTTGAAACTTCTTAAGTCCTCTATGGTTTCATTTTAATATTACCTATGTATGTTTAAATTCAAATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGRGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAATCGGACGGATCGTATGGGACAGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTAATGTCTCTATGGTGTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>AAGCGTCTTCTGATGCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>CTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTT</canonical_amplicon>
		<polymorphic_amplicon>CTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGRGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38658</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>818728</contig_pos>
        <strand>+</strand>
        <context>TGGTCGAAGR[C/G]TTAGTRGCST</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGG</left_flank>
        <right_flank>TTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGAAAGAAAGTTCTTACTTTACGATCAACATGACTTTTGCCGCGTCTGGTGGTGGCGGCGGATCCCTTTCCTCCACTTGGCGGGGCCTGAAATCACTTAATTTCGTAGAAAGAACGTTTTGAAACTTCTTAAGTCCTCTATGGTTTCATTTTAATATTACCTATGTATGTTTAAATTCAAATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAATCGGACGGATCGTATGGGACAGGCA</canonical>
            <polymorphic>GAAGAAAGAAAGTTCTTACTTTACGATCAACATGACTTTTGCCGCGTCTGGTGGTGGCGGCGGATCCCTTTCCTCCACTTGGCGGGGCCTGAAATCACTTAATTTCGTAGAAAGAACGTTTTGAAACTTCTTAAGTCCTCTATGGTTTCATTTTAATATTACCTATGTATGTTTAAATTCAAATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGSTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAATCGGACGGATCGTATGGGACAGGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTAATGTCTCTATGGTGTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>AAGCGTCTTCTGATGCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>CTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTT</canonical_amplicon>
		<polymorphic_amplicon>CTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGSTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38659</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>818741</contig_pos>
        <strand>+</strand>
        <context>AGTRGCSTTT[A/T]TGRTCGAAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTT</left_flank>
        <right_flank>TGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTACTTTACGATCAACATGACTTTTGCCGCGTCTGGTGGTGGCGGCGGATCCCTTTCCTCCACTTGGCGGGGCCTGAAATCACTTAATTTCGTAGAAAGAACGTTTTGAAACTTCTTAAGTCCTCTATGGTTTCATTTTAATATTACCTATGTATGTTTAAATTCAAATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAATCGGACGGATCGTATGGGACAGGCAGATGGTGTGGTAA</canonical>
            <polymorphic>TCTTACTTTACGATCAACATGACTTTTGCCGCGTCTGGTGGTGGCGGCGGATCCCTTTCCTCCACTTGGCGGGGCCTGAAATCACTTAATTTCGTAGAAAGAACGTTTTGAAACTTCTTAAGTCCTCTATGGTTTCATTTTAATATTACCTATGTATGTTTAAATTCAAATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTWTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAATCGGACGGATCGTATGGGACAGGCAGATGGTGTGGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTAATGTCTCTATGGTGTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>AAGCGTCTTCTGATGCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>CTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTT</canonical_amplicon>
		<polymorphic_amplicon>CTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTWTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38660</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>818859</contig_pos>
        <strand>+</strand>
        <context>TTGAATAAAA[A/C]ATGTTTTCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAA</left_flank>
        <right_flank>ATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAGTCCTCTATGGTTTCATTTTAATATTACCTATGTATGTTTAAATTCAAATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAATCGGACGGATCGTATGGGACAGGCAGATGGTGTGGTAAACCACGCCCACATTGTTTCTCTTTCTCTTCTGGGAGGGGGACATAATAGGCACTGTGGCATGCTAAGAGCAGGATTGTCTACAGATGGTTTGGTAGGTGACCCTTGGCAATGGTCCCT</canonical>
            <polymorphic>TAAGTCCTCTATGGTTTCATTTTAATATTACCTATGTATGTTTAAATTCAAATTTGCTTACCTGGGTTGTGTGGCGCCCACTTGAGCCGGCTGGAGCAGCCTTGGGAATTGGAGTCCCGGAGGATTTGACACTCGAGGGAGCTTTAGCTGAGGCCACGGCCTGAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAAMATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAATCGGACGGATCGTATGGGACAGGCAGATGGTGTGGTAAACCACGCCCACATTGTTTCTCTTTCTCTTCTGGGAGGGGGACATAATAGGCACTGTGGCATGCTAAGAGCAGGATTGTCTACAGATGGTTTGGTAGGTGACCCTTGGCAATGGTCCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>503 441 56</canonical_bands>
                <polymorphic_bands>944 56</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 314 127 59</canonical_bands>
                <polymorphic_bands>627 314 59</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAGAAGACGCTTTTGTTG</pcr_primer_p1>
		<pcr_primer_p2>GATTTGCTTGATTACTCAACTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATC</canonical_amplicon>
		<polymorphic_amplicon>ATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAAMATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38661</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>819021</contig_pos>
        <strand>+</strand>
        <context>GATTTATCAA[A/G]CACGAAAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAA</left_flank>
        <right_flank>CACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAATCGGACGGATCGTATGGGACAGGCAGATGGTGTGGTAAACCACGCCCACATTGTTTCTCTTTCTCTTCTGGGAGGGGGACATAATAGGCACTGTGGCATGCTAAGAGCAGGATTGTCTACAGATGGTTTGGTAGGTGACCCTTGGCAATGGTCCCTCTGGTTACCCCTCTTTCTACTACAACACCACCATCACACAGCCTCCACCACACACCAGCGCACACAAGCAAGGTAGCGAACAGCTATCGTCTACATTCTCTCTGATTCGAAGTTATTGGCGGGAAACGTTTTTTTTAAATGTTTTTTAAAGAAATCCAGGAT</canonical>
            <polymorphic>GAAATAGCAAAGTTTCAAGGTGGGAACGTTTTGAAACTTCTTAATGTCTCTATGGTGTTTCAAAAAATGCACTGTGAATTTATTATGAAAAATTGAAATCTGCTTACCGAGCGAGCTGGAGTCTTCTGCAGAGGCTTTGTGACTTCTTTGATCAAAGGCTTAATGGCCTTTTTGGTCGAAGACTTAGTGGCGTTTTTGGTCGAAGGGTTAGTAGCCTTTTTGATCGAAGGCTTAATAGCCTTTTTGGTCGAAGGCTTAATAGCCTTTTTGACCGAAGGCTTAGCATCAGAAGACGCTTTTGTTGAGGAGGCCTGAAATTGTGCTTTCTTGAATAAAACATGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAARCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAACGGTGAGTGGTGTCAAGACAGAGAAGGGAATGAGAGAGGGTGGCTGGTGTATGATTCAAAACGCGCGCGTAGACGAGAGAGCAGGAGACCCAGAGAAAGGTGACAATCGGACGGATCGTATGGGACAGGCAGATGGTGTGGTAAACCACGCCCACATTGTTTCTCTTTCTCTTCTGGGAGGGGGACATAATAGGCACTGTGGCATGCTAAGAGCAGGATTGTCTACAGATGGTTTGGTAGGTGACCCTTGGCAATGGTCCCTCTGGTTACCCCTCTTTCTACTACAACACCACCATCACACAGCCTCCACCACACACCAGCGCACACAAGCAAGGTAGCGAACAGCTATCGTCTACATTCTCTCTGATTCGAAGTTATTGGCGGGAAACGTTTTTTTTAAATGTTTTTTAAAGAAATCCAGGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTTTTCAATCAACTAAAGTTATCA</pcr_primer_p1>
		<pcr_primer_p2>GTTTCCAAGACCTTTTTGTG</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>TGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAAGCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAAC</canonical_amplicon>
		<polymorphic_amplicon>TGTTTTCAATCAACTAAAGTTATCAGTATTCAATGAAAACTTACTGGGTCTGGTGGGCTTGGCGAGAAAGCTCGGCGAGGGAACGGAGCTCTCTTTCCGAGTGCTTTGGTCTTGGCTGGGGTACGCATGATGTTCTGGAACATTGTTTGAGATTTATCAARCACGAAAACAAGAAGTTGAGTAATCAAGCAAATCTGGTGAAAAAGAACAGTAATCCGCACAAAAAGGTCTTGGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38662</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>898032</contig_pos>
        <strand></strand>
        <context>Ttctattttt[T/C]gtgaggtcty</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCACTACAATTAGAGGGAGTACTTCAAATAGATTGGGCGCTTCTATTTTT</left_flank>
        <right_flank>GTGAGGTCTCTAGGGGGGCACTTCAATTAGAGGGGCCCTTCAATTTCAGG</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTATTGCAGGAACATCATTTTTCAGTGAAAATTTTGTTTTTCTTCTCAGAATCCATTACAATTTCTTCATTTAAAAAATAAAATGTCTAATATGGTAAAATTTGAAAAAAAAACTGGCACTTGAGAATTTCGCGAGCGCCGTTCGTGCTGATTTACAAGGACCCGGCCGTAAAACCGATATTGTATCAAACGAAATAAATTCTCGGAGTTTAGAGAGATTTTCTGAATAAAATTCAGATTTCTTGGTAACATTTTGATCGCTAGAATTTTTTAGAATAATTTCAAACTGTAAACTCCAAACTTAATCGCGAAAATCGCTCAAACGAGACAAAAATCTGTAATAGAGCGACGGCATTCAAATTCTCAGGTACCAGGTTTTTATAAGTTTGACAATTATTCAATCAAAACAAAAAAAACGGCTGAAAATCAGAGGAGATCGTCAAAGGAGCACTACAATTAGAGGGAGTACTTCAAATAGATTGGGCGCTTCTATTTTTTGTGAGGTCTCTAGGGGGGCACTTCAATTAGAGGGGCCCTTCAATTTCAGGGGCCCATCTAATACAGGTTTTACGGTAGTCATCTTTAAACAAAAGAAAAAGTCAACCTTTTCAAGTTACGGGCCAAACAAACGCTATAGTCAGATGTTTATTTTCTTTCGTACAGTTTAACTTTTTGTTAAGGTCTGTATGCAATTTGTACAATTTTTAATTTGTCTAAGAGCTTCTTCAAAAAGTGCTCCTTACACTGTACAGATGAAAGGGGGAATGAAAAATATGTGGCTTTAAAACATGAATTTGAGGCGAACAACAGTTCATAAATAACAGTGAGCAGAAAAAATTTAGGATTTGCAACAACATCAGTACGGATAACGATACATGTTGAGAAAAAGCTTTGAGAAAATTTAAAACGTGTGAGAGTCACTCAATTCTGAATGATGAAATATTGAAAAACCAACGATTTTAAGTCTAGAAATTGATGAATCTTCAAACTCTTAGTGA</canonical>
            <polymorphic>TTCTATTGCAGGAACATCATTTTTCAGTGAAAATTTTGTTTTTCTTCTCAGAATCCATTACAATTTCTTCATTTAAAAAATAAAATGTCTAATATGGTAAAATTTGAAAAAAAAACTGGCACTTGAGAATTTCGCGAGCGCCGTTCGTGCTGATTTACAAGGACCCGGCCGTAAAACCGATATTGTATCAAACGAAATAAATTCTCGGAGTTTAGAGAGATTTTCTGAATAAAATTCAGATTTCTTGGTAACATTTTGATCGCTAGAATTTTTTAGAATAATTTCAAACTGTAAACTCCAAACTTAATCGCGAAAATCGCTCAAACGAGACAAAAATCTGTAATAGAGCGACGGCATTCAAATTCTCAGGTACCAGGTTTTTATAAGTTTGACAATTATTCAATCAAAACAAAAAAAACGGCTGAAAATCAGAGGAGATCGTCAAAGGAGCACTACAATTAGAGGGAGTACTTCAAATAGATTGGGCGCTTCTATTTTTYGTGAGGTCTCTAGGGGGGCACTTCAATTAGAGGGGCCCTTCAATTTCAGGGGCCCATCTAATACAGGTTTTACGGTAGTCATCTTTAAACAAAAGAAAAAGTCAACCTTTTCAAGTTACGGGCCAAACAAACGCTATAGTCAGATGTTTATTTTCTTTCGTACAGTTTAACTTTTTGTTAAGGTCTGTATGCAATTTGTACAATTTTTAATTTGTCTAAGAGCTTCTTCAAAAAGTGCTCCTTACACTGTACAGATGAAAGGGGGAATGAAAAATATGTGGCTTTAAAACATGAATTTGAGGCGAACAACAGTTCATAAATAACAGTGAGCAGAAAAAATTTAGGATTTGCAACAACATCAGTACGGATAACGATACATGTTGAGAAAAAGCTTTGAGAAAATTTAAAACGTGTGAGAGTCACTCAATTCTGAATGATGAAATATTGAAAAACCAACGATTTTAAGTCTAGAAATTGATGAATCTTCAAACTCTTAGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATCCATTACAATTTCTTCATTT</pcr_primer_p1>
		<pcr_primer_p2>ACTTTTTCTTTTGTTTAAAGATGAC</pcr_primer_p2>
		<pcr_amplicon_size>552</pcr_amplicon_size>
		<canonical_amplicon>GAATCCATTACAATTTCTTCATTTAAAAAATAAAATGTCTAATATGGTAAAATTTGAAAAAAAAACTGGCACTTGAGAATTTCGCGAGCGCCGTTCGTGCTGATTTACAAGGACCCGGCCGTAAAACCGATATTGTATCAAACGAAATAAATTCTCGGAGTTTAGAGAGATTTTCTGAATAAAATTCAGATTTCTTGGTAACATTTTGATCGCTAGAATTTTTTAGAATAATTTCAAACTGTAAACTCCAAACTTAATCGCGAAAATCGCTCAAACGAGACAAAAATCTGTAATAGAGCGACGGCATTCAAATTCTCAGGTACCAGGTTTTTATAAGTTTGACAATTATTCAATCAAAACAAAAAAAACGGCTGAAAATCAGAGGAGATCGTCAAAGGAGCACTACAATTAGAGGGAGTACTTCAAATAGATTGGGCGCTTCTATTTTTTGTGAGGTCTCTAGGGGGGCACTTCAATTAGAGGGGCCCTTCAATTTCAGGGGCCCATCTAATACAGGTTTTACGGTAGTCATCTTTAAACAAAAGAAAAAGT</canonical_amplicon>
		<polymorphic_amplicon>GAATCCATTACAATTTCTTCATTTAAAAAATAAAATGTCTAATATGGTAAAATTTGAAAAAAAAACTGGCACTTGAGAATTTCGCGAGCGCCGTTCGTGCTGATTTACAAGGACCCGGCCGTAAAACCGATATTGTATCAAACGAAATAAATTCTCGGAGTTTAGAGAGATTTTCTGAATAAAATTCAGATTTCTTGGTAACATTTTGATCGCTAGAATTTTTTAGAATAATTTCAAACTGTAAACTCCAAACTTAATCGCGAAAATCGCTCAAACGAGACAAAAATCTGTAATAGAGCGACGGCATTCAAATTCTCAGGTACCAGGTTTTTATAAGTTTGACAATTATTCAATCAAAACAAAAAAAACGGCTGAAAATCAGAGGAGATCGTCAAAGGAGCACTACAATTAGAGGGAGTACTTCAAATAGATTGGGCGCTTCTATTTTTYGTGAGGTCTCTAGGGGGGCACTTCAATTAGAGGGGCCCTTCAATTTCAGGGGCCCATCTAATACAGGTTTTACGGTAGTCATCTTTAAACAAAAGAAAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38663</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>898042</contig_pos>
        <strand></strand>
        <context>ygtgaggtct[C/T]taggggggca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGAGGGAGTACTTCAAATAGATTGGGCGCTTCTATTTTTTGTGAGGTCT</left_flank>
        <right_flank>TAGGGGGGCACTTCAATTAGAGGGGCCCTTCAATTTCAGGGGCCCATCTA</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAACATCATTTTTCAGTGAAAATTTTGTTTTTCTTCTCAGAATCCATTACAATTTCTTCATTTAAAAAATAAAATGTCTAATATGGTAAAATTTGAAAAAAAAACTGGCACTTGAGAATTTCGCGAGCGCCGTTCGTGCTGATTTACAAGGACCCGGCCGTAAAACCGATATTGTATCAAACGAAATAAATTCTCGGAGTTTAGAGAGATTTTCTGAATAAAATTCAGATTTCTTGGTAACATTTTGATCGCTAGAATTTTTTAGAATAATTTCAAACTGTAAACTCCAAACTTAATCGCGAAAATCGCTCAAACGAGACAAAAATCTGTAATAGAGCGACGGCATTCAAATTCTCAGGTACCAGGTTTTTATAAGTTTGACAATTATTCAATCAAAACAAAAAAAACGGCTGAAAATCAGAGGAGATCGTCAAAGGAGCACTACAATTAGAGGGAGTACTTCAAATAGATTGGGCGCTTCTATTTTTTGTGAGGTCTCTAGGGGGGCACTTCAATTAGAGGGGCCCTTCAATTTCAGGGGCCCATCTAATACAGGTTTTACGGTAGTCATCTTTAAACAAAAGAAAAAGTCAACCTTTTCAAGTTACGGGCCAAACAAACGCTATAGTCAGATGTTTATTTTCTTTCGTACAGTTTAACTTTTTGTTAAGGTCTGTATGCAATTTGTACAATTTTTAATTTGTCTAAGAGCTTCTTCAAAAAGTGCTCCTTACACTGTACAGATGAAAGGGGGAATGAAAAATATGTGGCTTTAAAACATGAATTTGAGGCGAACAACAGTTCATAAATAACAGTGAGCAGAAAAAATTTAGGATTTGCAACAACATCAGTACGGATAACGATACATGTTGAGAAAAAGCTTTGAGAAAATTTAAAACGTGTGAGAGTCACTCAATTCTGAATGATGAAATATTGAAAAACCAACGATTTTAAGTCTAGAAATTGATGAATCTTCAAACTCTTAGTGAACCTAGTCTT</canonical>
            <polymorphic>GGAACATCATTTTTCAGTGAAAATTTTGTTTTTCTTCTCAGAATCCATTACAATTTCTTCATTTAAAAAATAAAATGTCTAATATGGTAAAATTTGAAAAAAAAACTGGCACTTGAGAATTTCGCGAGCGCCGTTCGTGCTGATTTACAAGGACCCGGCCGTAAAACCGATATTGTATCAAACGAAATAAATTCTCGGAGTTTAGAGAGATTTTCTGAATAAAATTCAGATTTCTTGGTAACATTTTGATCGCTAGAATTTTTTAGAATAATTTCAAACTGTAAACTCCAAACTTAATCGCGAAAATCGCTCAAACGAGACAAAAATCTGTAATAGAGCGACGGCATTCAAATTCTCAGGTACCAGGTTTTTATAAGTTTGACAATTATTCAATCAAAACAAAAAAAACGGCTGAAAATCAGAGGAGATCGTCAAAGGAGCACTACAATTAGAGGGAGTACTTCAAATAGATTGGGCGCTTCTATTTTTTGTGAGGTCTYTAGGGGGGCACTTCAATTAGAGGGGCCCTTCAATTTCAGGGGCCCATCTAATACAGGTTTTACGGTAGTCATCTTTAAACAAAAGAAAAAGTCAACCTTTTCAAGTTACGGGCCAAACAAACGCTATAGTCAGATGTTTATTTTCTTTCGTACAGTTTAACTTTTTGTTAAGGTCTGTATGCAATTTGTACAATTTTTAATTTGTCTAAGAGCTTCTTCAAAAAGTGCTCCTTACACTGTACAGATGAAAGGGGGAATGAAAAATATGTGGCTTTAAAACATGAATTTGAGGCGAACAACAGTTCATAAATAACAGTGAGCAGAAAAAATTTAGGATTTGCAACAACATCAGTACGGATAACGATACATGTTGAGAAAAAGCTTTGAGAAAATTTAAAACGTGTGAGAGTCACTCAATTCTGAATGATGAAATATTGAAAAACCAACGATTTTAAGTCTAGAAATTGATGAATCTTCAAACTCTTAGTGAACCTAGTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>458 253 247 35 7</canonical_bands>
                <polymorphic_bands>705 253 35 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATCCATTACAATTTCTTCATTT</pcr_primer_p1>
		<pcr_primer_p2>ACTTTTTCTTTTGTTTAAAGATGAC</pcr_primer_p2>
		<pcr_amplicon_size>552</pcr_amplicon_size>
		<canonical_amplicon>GAATCCATTACAATTTCTTCATTTAAAAAATAAAATGTCTAATATGGTAAAATTTGAAAAAAAAACTGGCACTTGAGAATTTCGCGAGCGCCGTTCGTGCTGATTTACAAGGACCCGGCCGTAAAACCGATATTGTATCAAACGAAATAAATTCTCGGAGTTTAGAGAGATTTTCTGAATAAAATTCAGATTTCTTGGTAACATTTTGATCGCTAGAATTTTTTAGAATAATTTCAAACTGTAAACTCCAAACTTAATCGCGAAAATCGCTCAAACGAGACAAAAATCTGTAATAGAGCGACGGCATTCAAATTCTCAGGTACCAGGTTTTTATAAGTTTGACAATTATTCAATCAAAACAAAAAAAACGGCTGAAAATCAGAGGAGATCGTCAAAGGAGCACTACAATTAGAGGGAGTACTTCAAATAGATTGGGCGCTTCTATTTTTTGTGAGGTCTCTAGGGGGGCACTTCAATTAGAGGGGCCCTTCAATTTCAGGGGCCCATCTAATACAGGTTTTACGGTAGTCATCTTTAAACAAAAGAAAAAGT</canonical_amplicon>
		<polymorphic_amplicon>GAATCCATTACAATTTCTTCATTTAAAAAATAAAATGTCTAATATGGTAAAATTTGAAAAAAAAACTGGCACTTGAGAATTTCGCGAGCGCCGTTCGTGCTGATTTACAAGGACCCGGCCGTAAAACCGATATTGTATCAAACGAAATAAATTCTCGGAGTTTAGAGAGATTTTCTGAATAAAATTCAGATTTCTTGGTAACATTTTGATCGCTAGAATTTTTTAGAATAATTTCAAACTGTAAACTCCAAACTTAATCGCGAAAATCGCTCAAACGAGACAAAAATCTGTAATAGAGCGACGGCATTCAAATTCTCAGGTACCAGGTTTTTATAAGTTTGACAATTATTCAATCAAAACAAAAAAAACGGCTGAAAATCAGAGGAGATCGTCAAAGGAGCACTACAATTAGAGGGAGTACTTCAAATAGATTGGGCGCTTCTATTTTTTGTGAGGTCTYTAGGGGGGCACTTCAATTAGAGGGGCCCTTCAATTTCAGGGGCCCATCTAATACAGGTTTTACGGTAGTCATCTTTAAACAAAAGAAAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38664</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>898062</contig_pos>
        <strand></strand>
        <context>acttcaatta[G/A]aggggccctt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GATTGGGCGCTTCTATTTTTTGTGAGGTCTCTAGGGGGGCACTTCAATTA</left_flank>
        <right_flank>AGGGGCCCTTCAATTTCAGGGGCCCATCTAATACAGGTTTTACGGTAGTC</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTTGTTTTTCTTCTCAGAATCCATTACAATTTCTTCATTTAAAAAATAAAATGTCTAATATGGTAAAATTTGAAAAAAAAACTGGCACTTGAGAATTTCGCGAGCGCCGTTCGTGCTGATTTACAAGGACCCGGCCGTAAAACCGATATTGTATCAAACGAAATAAATTCTCGGAGTTTAGAGAGATTTTCTGAATAAAATTCAGATTTCTTGGTAACATTTTGATCGCTAGAATTTTTTAGAATAATTTCAAACTGTAAACTCCAAACTTAATCGCGAAAATCGCTCAAACGAGACAAAAATCTGTAATAGAGCGACGGCATTCAAATTCTCAGGTACCAGGTTTTTATAAGTTTGACAATTATTCAATCAAAACAAAAAAAACGGCTGAAAATCAGAGGAGATCGTCAAAGGAGCACTACAATTAGAGGGAGTACTTCAAATAGATTGGGCGCTTCTATTTTTTGTGAGGTCTCTAGGGGGGCACTTCAATTAGAGGGGCCCTTCAATTTCAGGGGCCCATCTAATACAGGTTTTACGGTAGTCATCTTTAAACAAAAGAAAAAGTCAACCTTTTCAAGTTACGGGCCAAACAAACGCTATAGTCAGATGTTTATTTTCTTTCGTACAGTTTAACTTTTTGTTAAGGTCTGTATGCAATTTGTACAATTTTTAATTTGTCTAAGAGCTTCTTCAAAAAGTGCTCCTTACACTGTACAGATGAAAGGGGGAATGAAAAATATGTGGCTTTAAAACATGAATTTGAGGCGAACAACAGTTCATAAATAACAGTGAGCAGAAAAAATTTAGGATTTGCAACAACATCAGTACGGATAACGATACATGTTGAGAAAAAGCTTTGAGAAAATTTAAAACGTGTGAGAGTCACTCAATTCTGAATGATGAAATATTGAAAAACCAACGATTTTAAGTCTAGAAATTGATGAATCTTCAAACTCTTAGTGAACCTAGTCTTATTGAGAGGAAACATTCTAA</canonical>
            <polymorphic>AAATTTTGTTTTTCTTCTCAGAATCCATTACAATTTCTTCATTTAAAAAATAAAATGTCTAATATGGTAAAATTTGAAAAAAAAACTGGCACTTGAGAATTTCGCGAGCGCCGTTCGTGCTGATTTACAAGGACCCGGCCGTAAAACCGATATTGTATCAAACGAAATAAATTCTCGGAGTTTAGAGAGATTTTCTGAATAAAATTCAGATTTCTTGGTAACATTTTGATCGCTAGAATTTTTTAGAATAATTTCAAACTGTAAACTCCAAACTTAATCGCGAAAATCGCTCAAACGAGACAAAAATCTGTAATAGAGCGACGGCATTCAAATTCTCAGGTACCAGGTTTTTATAAGTTTGACAATTATTCAATCAAAACAAAAAAAACGGCTGAAAATCAGAGGAGATCGTCAAAGGAGCACTACAATTAGAGGGAGTACTTCAAATAGATTGGGCGCTTCTATTTTTTGTGAGGTCTCTAGGGGGGCACTTCAATTARAGGGGCCCTTCAATTTCAGGGGCCCATCTAATACAGGTTTTACGGTAGTCATCTTTAAACAAAAGAAAAAGTCAACCTTTTCAAGTTACGGGCCAAACAAACGCTATAGTCAGATGTTTATTTTCTTTCGTACAGTTTAACTTTTTGTTAAGGTCTGTATGCAATTTGTACAATTTTTAATTTGTCTAAGAGCTTCTTCAAAAAGTGCTCCTTACACTGTACAGATGAAAGGGGGAATGAAAAATATGTGGCTTTAAAACATGAATTTGAGGCGAACAACAGTTCATAAATAACAGTGAGCAGAAAAAATTTAGGATTTGCAACAACATCAGTACGGATAACGATACATGTTGAGAAAAAGCTTTGAGAAAATTTAAAACGTGTGAGAGTCACTCAATTCTGAATGATGAAATATTGAAAAACCAACGATTTTAAGTCTAGAAATTGATGAATCTTCAAACTCTTAGTGAACCTAGTCTTATTGAGAGGAAACATTCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATCCATTACAATTTCTTCATTT</pcr_primer_p1>
		<pcr_primer_p2>ACTTTTTCTTTTGTTTAAAGATGAC</pcr_primer_p2>
		<pcr_amplicon_size>552</pcr_amplicon_size>
		<canonical_amplicon>GAATCCATTACAATTTCTTCATTTAAAAAATAAAATGTCTAATATGGTAAAATTTGAAAAAAAAACTGGCACTTGAGAATTTCGCGAGCGCCGTTCGTGCTGATTTACAAGGACCCGGCCGTAAAACCGATATTGTATCAAACGAAATAAATTCTCGGAGTTTAGAGAGATTTTCTGAATAAAATTCAGATTTCTTGGTAACATTTTGATCGCTAGAATTTTTTAGAATAATTTCAAACTGTAAACTCCAAACTTAATCGCGAAAATCGCTCAAACGAGACAAAAATCTGTAATAGAGCGACGGCATTCAAATTCTCAGGTACCAGGTTTTTATAAGTTTGACAATTATTCAATCAAAACAAAAAAAACGGCTGAAAATCAGAGGAGATCGTCAAAGGAGCACTACAATTAGAGGGAGTACTTCAAATAGATTGGGCGCTTCTATTTTTTGTGAGGTCTCTAGGGGGGCACTTCAATTAGAGGGGCCCTTCAATTTCAGGGGCCCATCTAATACAGGTTTTACGGTAGTCATCTTTAAACAAAAGAAAAAGT</canonical_amplicon>
		<polymorphic_amplicon>GAATCCATTACAATTTCTTCATTTAAAAAATAAAATGTCTAATATGGTAAAATTTGAAAAAAAAACTGGCACTTGAGAATTTCGCGAGCGCCGTTCGTGCTGATTTACAAGGACCCGGCCGTAAAACCGATATTGTATCAAACGAAATAAATTCTCGGAGTTTAGAGAGATTTTCTGAATAAAATTCAGATTTCTTGGTAACATTTTGATCGCTAGAATTTTTTAGAATAATTTCAAACTGTAAACTCCAAACTTAATCGCGAAAATCGCTCAAACGAGACAAAAATCTGTAATAGAGCGACGGCATTCAAATTCTCAGGTACCAGGTTTTTATAAGTTTGACAATTATTCAATCAAAACAAAAAAAACGGCTGAAAATCAGAGGAGATCGTCAAAGGAGCACTACAATTAGAGGGAGTACTTCAAATAGATTGGGCGCTTCTATTTTTTGTGAGGTCTCTAGGGGGGCACTTCAATTARAGGGGCCCTTCAATTTCAGGGGCCCATCTAATACAGGTTTTACGGTAGTCATCTTTAAACAAAAGAAAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38665</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>898213</contig_pos>
        <strand>+</strand>
        <context>CTTTTTGTTA[A/G]GGTCTGTATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGCTATAGTCAGATGTTTATTTTCTTTCGTACAGTTTAACTTTTTGTTA</left_flank>
        <right_flank>GGTCTGTATGCAATTTGTACAATTTTTAATTTGTCTAAGAGCTTCTTCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGTATCAAACGAAATAAATTCTCGGAGTTTAGAGAGATTTTCTGAATAAAATTCAGATTTCTTGGTAACATTTTGATCGCTAGAATTTTTTAGAATAATTTCAAACTGTAAACTCCAAACTTAATCGCGAAAATCGCTCAAACGAGACAAAAATCTGTAATAGAGCGACGGCATTCAAATTCTCAGGTACCAGGTTTTTATAAGTTTGACAATTATTCAATCAAAACAAAAAAAACGGCTGAAAATCAGAGGAGATCGTCAAAGGAGCACTACAATTAGAGGGAGTACTTCAAATAGATTGGGCGCTTCTATTTTTTGTGAGGTCTCTAGGGGGGCACTTCAATTAGAGGGGCCCTTCAATTTCAGGGGCCCATCTAATACAGGTTTTACGGTAGTCATCTTTAAACAAAAGAAAAAGTCAACCTTTTCAAGTTACGGGCCAAACAAACGCTATAGTCAGATGTTTATTTTCTTTCGTACAGTTTAACTTTTTGTTAAGGTCTGTATGCAATTTGTACAATTTTTAATTTGTCTAAGAGCTTCTTCAAAAAGTGCTCCTTACACTGTACAGATGAAAGGGGGAATGAAAAATATGTGGCTTTAAAACATGAATTTGAGGCGAACAACAGTTCATAAATAACAGTGAGCAGAAAAAATTTAGGATTTGCAACAACATCAGTACGGATAACGATACATGTTGAGAAAAAGCTTTGAGAAAATTTAAAACGTGTGAGAGTCACTCAATTCTGAATGATGAAATATTGAAAAACCAACGATTTTAAGTCTAGAAATTGATGAATCTTCAAACTCTTAGTGAACCTAGTCTTATTGAGAGGAAACATTCTAAATGCAAGAGGTTCTGAGAAATCAAAAACAGAAGGCTAGAAAAATCTTTCGTTATTTATCACTTTTATAAGTGCAGATACAATACATCCGGTGCCAGGCTGATACAACATTTTCAGATACATGCAAATTCTAGAATACAAAACTTACATGGA</canonical>
            <polymorphic>ATTGTATCAAACGAAATAAATTCTCGGAGTTTAGAGAGATTTTCTGAATAAAATTCAGATTTCTTGGTAACATTTTGATCGCTAGAATTTTTTAGAATAATTTCAAACTGTAAACTCCAAACTTAATCGCGAAAATCGCTCAAACGAGACAAAAATCTGTAATAGAGCGACGGCATTCAAATTCTCAGGTACCAGGTTTTTATAAGTTTGACAATTATTCAATCAAAACAAAAAAAACGGCTGAAAATCAGAGGAGATCGTCAAAGGAGCACTACAATTAGAGGGAGTACTTCAAATAGATTGGGCGCTTCTATTTTTTGTGAGGTCTCTAGGGGGGCACTTCAATTAGAGGGGCCCTTCAATTTCAGGGGCCCATCTAATACAGGTTTTACGGTAGTCATCTTTAAACAAAAGAAAAAGTCAACCTTTTCAAGTTACGGGCCAAACAAACGCTATAGTCAGATGTTTATTTTCTTTCGTACAGTTTAACTTTTTGTTARGGTCTGTATGCAATTTGTACAATTTTTAATTTGTCTAAGAGCTTCTTCAAAAAGTGCTCCTTACACTGTACAGATGAAAGGGGGAATGAAAAATATGTGGCTTTAAAACATGAATTTGAGGCGAACAACAGTTCATAAATAACAGTGAGCAGAAAAAATTTAGGATTTGCAACAACATCAGTACGGATAACGATACATGTTGAGAAAAAGCTTTGAGAAAATTTAAAACGTGTGAGAGTCACTCAATTCTGAATGATGAAATATTGAAAAACCAACGATTTTAAGTCTAGAAATTGATGAATCTTCAAACTCTTAGTGAACCTAGTCTTATTGAGAGGAAACATTCTAAATGCAAGAGGTTCTGAGAAATCAAAAACAGAAGGCTAGAAAAATCTTTCGTTATTTATCACTTTTATAAGTGCAGATACAATACATCCGGTGCCAGGCTGATACAACATTTTCAGATACATGCAAATTCTAGAATACAAAACTTACATGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>281 219 123 120 82 77 58 29 11</canonical_bands>
                <polymorphic_bands>281 219 123 120 82 77 58 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAACGCTATAGTCAGATGTTT</pcr_primer_p1>
		<pcr_primer_p2>GTATCGTTATCCGTACTGATGTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACAAACGCTATAGTCAGATGTTTATTTTCTTTCGTACAGTTTAACTTTTTGTTAAGGTCTGTATGCAATTTGTACAATTTTTAATTTGTCTAAGAGCTTCTTCAAAAAGTGCTCCTTACACTGTACAGATGAAAGGGGGAATGAAAAATATGTGGCTTTAAAACATGAATTTGAGGCGAACAACAGTTCATAAATAACAGTGAGCAGAAAAAATTTAGGATTTGCAACAACATCAGTACGGATAACGATAC</canonical_amplicon>
		<polymorphic_amplicon>ACAAACGCTATAGTCAGATGTTTATTTTCTTTCGTACAGTTTAACTTTTTGTTARGGTCTGTATGCAATTTGTACAATTTTTAATTTGTCTAAGAGCTTCTTCAAAAAGTGCTCCTTACACTGTACAGATGAAAGGGGGAATGAAAAATATGTGGCTTTAAAACATGAATTTGAGGCGAACAACAGTTCATAAATAACAGTGAGCAGAAAAAATTTAGGATTTGCAACAACATCAGTACGGATAACGATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38666</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>898364</contig_pos>
        <strand>+</strand>
        <context>AACAGTGAGC[A/T]GAAAAAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTTAAAACATGAATTTGAGGCGAACAACAGTTCATAAATAACAGTGAGC</left_flank>
        <right_flank>GAAAAAATTTAGGATTTGCAACAACATCAGTACGGATAACGATACATGTT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATCTGTAATAGAGCGACGGCATTCAAATTCTCAGGTACCAGGTTTTTATAAGTTTGACAATTATTCAATCAAAACAAAAAAAACGGCTGAAAATCAGAGGAGATCGTCAAAGGAGCACTACAATTAGAGGGAGTACTTCAAATAGATTGGGCGCTTCTATTTTTTGTGAGGTCTCTAGGGGGGCACTTCAATTAGAGGGGCCCTTCAATTTCAGGGGCCCATCTAATACAGGTTTTACGGTAGTCATCTTTAAACAAAAGAAAAAGTCAACCTTTTCAAGTTACGGGCCAAACAAACGCTATAGTCAGATGTTTATTTTCTTTCGTACAGTTTAACTTTTTGTTAAGGTCTGTATGCAATTTGTACAATTTTTAATTTGTCTAAGAGCTTCTTCAAAAAGTGCTCCTTACACTGTACAGATGAAAGGGGGAATGAAAAATATGTGGCTTTAAAACATGAATTTGAGGCGAACAACAGTTCATAAATAACAGTGAGCAGAAAAAATTTAGGATTTGCAACAACATCAGTACGGATAACGATACATGTTGAGAAAAAGCTTTGAGAAAATTTAAAACGTGTGAGAGTCACTCAATTCTGAATGATGAAATATTGAAAAACCAACGATTTTAAGTCTAGAAATTGATGAATCTTCAAACTCTTAGTGAACCTAGTCTTATTGAGAGGAAACATTCTAAATGCAAGAGGTTCTGAGAAATCAAAAACAGAAGGCTAGAAAAATCTTTCGTTATTTATCACTTTTATAAGTGCAGATACAATACATCCGGTGCCAGGCTGATACAACATTTTCAGATACATGCAAATTCTAGAATACAAAACTTACATGGATGACAACCATTGCTGCTTTGAACTCTGAAACAAACCAACGCAGAGAATCACAAGGCACAAGATCTGAAAAAGAGAATAAAACTTAAAAAAAGGGCAAGATATAAAAATCAAAAGGGATGCTCCTCTGTTGGTAGGAGACTACTACACACCG</canonical>
            <polymorphic>AAAATCTGTAATAGAGCGACGGCATTCAAATTCTCAGGTACCAGGTTTTTATAAGTTTGACAATTATTCAATCAAAACAAAAAAAACGGCTGAAAATCAGAGGAGATCGTCAAAGGAGCACTACAATTAGAGGGAGTACTTCAAATAGATTGGGCGCTTCTATTTTTTGTGAGGTCTCTAGGGGGGCACTTCAATTAGAGGGGCCCTTCAATTTCAGGGGCCCATCTAATACAGGTTTTACGGTAGTCATCTTTAAACAAAAGAAAAAGTCAACCTTTTCAAGTTACGGGCCAAACAAACGCTATAGTCAGATGTTTATTTTCTTTCGTACAGTTTAACTTTTTGTTAAGGTCTGTATGCAATTTGTACAATTTTTAATTTGTCTAAGAGCTTCTTCAAAAAGTGCTCCTTACACTGTACAGATGAAAGGGGGAATGAAAAATATGTGGCTTTAAAACATGAATTTGAGGCGAACAACAGTTCATAAATAACAGTGAGCWGAAAAAATTTAGGATTTGCAACAACATCAGTACGGATAACGATACATGTTGAGAAAAAGCTTTGAGAAAATTTAAAACGTGTGAGAGTCACTCAATTCTGAATGATGAAATATTGAAAAACCAACGATTTTAAGTCTAGAAATTGATGAATCTTCAAACTCTTAGTGAACCTAGTCTTATTGAGAGGAAACATTCTAAATGCAAGAGGTTCTGAGAAATCAAAAACAGAAGGCTAGAAAAATCTTTCGTTATTTATCACTTTTATAAGTGCAGATACAATACATCCGGTGCCAGGCTGATACAACATTTTCAGATACATGCAAATTCTAGAATACAAAACTTACATGGATGACAACCATTGCTGCTTTGAACTCTGAAACAAACCAACGCAGAGAATCACAAGGCACAAGATCTGAAAAAGAGAATAAAACTTAAAAAAAGGGCAAGATATAAAAATCAAAAGGGATGCTCCTCTGTTGGTAGGAGACTACTACACACCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATATGTGGCTTTAAAACATGA</pcr_primer_p1>
		<pcr_primer_p2>TCCTCTCAATAAGACTAGGTTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATATGTGGCTTTAAAACATGAATTTGAGGCGAACAACAGTTCATAAATAACAGTGAGCAGAAAAAATTTAGGATTTGCAACAACATCAGTACGGATAACGATACATGTTGAGAAAAAGCTTTGAGAAAATTTAAAACGTGTGAGAGTCACTCAATTCTGAATGATGAAATATTGAAAAACCAACGATTTTAAGTCTAGAAATTGATGAATCTTCAAACTCTTAGTGAACCTAGTCTTATTGAGAGGA</canonical_amplicon>
		<polymorphic_amplicon>AAATATGTGGCTTTAAAACATGAATTTGAGGCGAACAACAGTTCATAAATAACAGTGAGCWGAAAAAATTTAGGATTTGCAACAACATCAGTACGGATAACGATACATGTTGAGAAAAAGCTTTGAGAAAATTTAAAACGTGTGAGAGTCACTCAATTCTGAATGATGAAATATTGAAAAACCAACGATTTTAAGTCTAGAAATTGATGAATCTTCAAACTCTTAGTGAACCTAGTCTTATTGAGAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38667</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>898599</contig_pos>
        <strand>+</strand>
        <context>ACAGAAGGCT[A/C]GAAAAATCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGGAAACATTCTAAATGCAAGAGGTTCTGAGAAATCAAAAACAGAAGGCT</left_flank>
        <right_flank>GAAAAATCTTTCGTTATTTATCACTTTTATAAGTGCAGATACAATACATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTACGGTAGTCATCTTTAAACAAAAGAAAAAGTCAACCTTTTCAAGTTACGGGCCAAACAAACGCTATAGTCAGATGTTTATTTTCTTTCGTACAGTTTAACTTTTTGTTAAGGTCTGTATGCAATTTGTACAATTTTTAATTTGTCTAAGAGCTTCTTCAAAAAGTGCTCCTTACACTGTACAGATGAAAGGGGGAATGAAAAATATGTGGCTTTAAAACATGAATTTGAGGCGAACAACAGTTCATAAATAACAGTGAGCAGAAAAAATTTAGGATTTGCAACAACATCAGTACGGATAACGATACATGTTGAGAAAAAGCTTTGAGAAAATTTAAAACGTGTGAGAGTCACTCAATTCTGAATGATGAAATATTGAAAAACCAACGATTTTAAGTCTAGAAATTGATGAATCTTCAAACTCTTAGTGAACCTAGTCTTATTGAGAGGAAACATTCTAAATGCAAGAGGTTCTGAGAAATCAAAAACAGAAGGCTAGAAAAATCTTTCGTTATTTATCACTTTTATAAGTGCAGATACAATACATCCGGTGCCAGGCTGATACAACATTTTCAGATACATGCAAATTCTAGAATACAAAACTTACATGGATGACAACCATTGCTGCTTTGAACTCTGAAACAAACCAACGCAGAGAATCACAAGGCACAAGATCTGAAAAAGAGAATAAAACTTAAAAAAAGGGCAAGATATAAAAATCAAAAGGGATGCTCCTCTGTTGGTAGGAGACTACTACACACCGACTGACACCAGTTCAAAATTATCAACCGGAAGGACAAACGGAAGCGCGTTAGAAGGAGGTGAGAGGGGAAAAAAGAAGGACCATGTTAGTGGAAGACACCTAGTTTCAATCAAAGATTGGAGAGAGAGAGAGATAGCGAGGAGACTGCTGCACATTTAATTAATCAGCTGCTAGTGTTTCAAATTTTCATGGAGATGTCATAGCCTCGTGGTGGGAAATGCGGCACACCAAAGTG</canonical>
            <polymorphic>TTTTACGGTAGTCATCTTTAAACAAAAGAAAAAGTCAACCTTTTCAAGTTACGGGCCAAACAAACGCTATAGTCAGATGTTTATTTTCTTTCGTACAGTTTAACTTTTTGTTAAGGTCTGTATGCAATTTGTACAATTTTTAATTTGTCTAAGAGCTTCTTCAAAAAGTGCTCCTTACACTGTACAGATGAAAGGGGGAATGAAAAATATGTGGCTTTAAAACATGAATTTGAGGCGAACAACAGTTCATAAATAACAGTGAGCAGAAAAAATTTAGGATTTGCAACAACATCAGTACGGATAACGATACATGTTGAGAAAAAGCTTTGAGAAAATTTAAAACGTGTGAGAGTCACTCAATTCTGAATGATGAAATATTGAAAAACCAACGATTTTAAGTCTAGAAATTGATGAATCTTCAAACTCTTAGTGAACCTAGTCTTATTGAGAGGAAACATTCTAAATGCAAGAGGTTCTGAGAAATCAAAAACAGAAGGCTMGAAAAATCTTTCGTTATTTATCACTTTTATAAGTGCAGATACAATACATCCGGTGCCAGGCTGATACAACATTTTCAGATACATGCAAATTCTAGAATACAAAACTTACATGGATGACAACCATTGCTGCTTTGAACTCTGAAACAAACCAACGCAGAGAATCACAAGGCACAAGATCTGAAAAAGAGAATAAAACTTAAAAAAAGGGCAAGATATAAAAATCAAAAGGGATGCTCCTCTGTTGGTAGGAGACTACTACACACCGACTGACACCAGTTCAAAATTATCAACCGGAAGGACAAACGGAAGCGCGTTAGAAGGAGGTGAGAGGGGAAAAAAGAAGGACCATGTTAGTGGAAGACACCTAGTTTCAATCAAAGATTGGAGAGAGAGAGAGATAGCGAGGAGACTGCTGCACATTTAATTAATCAGCTGCTAGTGTTTCAAATTTTCATGGAGATGTCATAGCCTCGTGGTGGGAAATGCGGCACACCAAAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>401 273 94 71 64 62 35</canonical_bands>
                <polymorphic_bands>401 273 156 71 64 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATATTGAAAAACCAACGATTT</pcr_primer_p1>
		<pcr_primer_p2>GTTGTCATCCATGTAAGTTTTGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATATTGAAAAACCAACGATTTTAAGTCTAGAAATTGATGAATCTTCAAACTCTTAGTGAACCTAGTCTTATTGAGAGGAAACATTCTAAATGCAAGAGGTTCTGAGAAATCAAAAACAGAAGGCTAGAAAAATCTTTCGTTATTTATCACTTTTATAAGTGCAGATACAATACATCCGGTGCCAGGCTGATACAACATTTTCAGATACATGCAAATTCTAGAATACAAAACTTACATGGATGACAAC</canonical_amplicon>
		<polymorphic_amplicon>AAATATTGAAAAACCAACGATTTTAAGTCTAGAAATTGATGAATCTTCAAACTCTTAGTGAACCTAGTCTTATTGAGAGGAAACATTCTAAATGCAAGAGGTTCTGAGAAATCAAAAACAGAAGGCTMGAAAAATCTTTCGTTATTTATCACTTTTATAAGTGCAGATACAATACATCCGGTGCCAGGCTGATACAACATTTTCAGATACATGCAAATTCTAGAATACAAAACTTACATGGATGACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38668</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>922297</contig_pos>
        <strand>+</strand>
        <context>CAAAGTGAGT[A/G]AAGAGGAGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGACGCCGGTGGTGGTAGCTGATAGACATGCTACGATGACAAAGTGAGT</left_flank>
        <right_flank>AAGAGGAGCATCGTTGGTTTGGATGCAGAGAGCCTGGAAGCAATCATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAAGAAAAAAAGAAAAAGAAAATCACAGTGCTCGAGGATTCACAAATTTTTTAGGATTCGAGTCGTAGTTGCAACCATTGGTATAGCATATACAGTGAATCGATGCGTCTTTCTTTGCCTGTAATCCACACAGTAACAAAACAGAACCATCTTCAAAAACTCACATGCGAATAGCAACCTGTATAAGATATCGGTGGTTTACCGACACCACCGTGGTAGAGAGATCGTCGTGACGTCAATTCGGTAGAAGTGATACAGTAATCAAAACCGTACTCCATTGCTACATATTCGCGTTGGATTCCAACCATACACTCGAGGACGCCGGTGGTGGTAGCTGATAGACATGCTACGATGACAAAGTGAGTAAAGAGGAGCATCGTTGGTTTGGATGCAGAGAGCCTGGAAGCAATCATTTTCCCGTTTTTCAACGGCTATTTCGAGCAGATGCAATATTTTCTAACTTTCGAAATGTGATAACGTTTATATGAAAAAAAAAGATCTAGAGAAATATGAAAACCTTTATGCAGTTTTGAATTTTCAAATATTGAATGATTTAGTCGGTGCTCAGAATGCAAATACGTCATTCGAAATCCGCGGCTAACAAAAAAAAAACCTATTCAAAAAAATACAAGTAACATCATTATGAACTTGAAACTTACAGAAAAAAAAATATTGCGAGATATTTTGTATCGGAAGACACATCTGCTACCAACTGCTCATTATGCGAGCGAGGGGTTGGTGTGGCATGCTGAGAGAGGATTATGTGGAAGTGAGGGCAGAAAGCAGGTGCAAAAAGGCTGATCAGATAATGACGTGGACAGAATGCACTAAAACTAACGGGTGAGAAGAACACGGAGGTCTGACAC</canonical>
            <polymorphic>ACATAAAAATAGTGTAAAAGATGATCCGACGTAACGGTCGGGTCTTGTTTAGCGGAGCGCATTTGCGGAGGGTTACGGAAAAAAAGAAAGAGTTCAGTAAATACCCAAAACTGGAGAGTTTTGTAACTGCATACAAAGAAAAAAAGAAAAAGAAAATCACAGTGCTCGAGGATTCACAAATTTTTTAGGATTCGAGTCGTAGTTGCAACCATTGGTATAGCATATACAGTGAATCGATGCGTCTTTCTTTGCCTGTAATCCACACAGTAACAAAACAGAACCATCTTCAAAAACTCACATGCGAATAGCAACCTGTATAAGATATCGGTGGTTTACCGACACCACCGTGGTAGAGAGATCGTCGTGACGTCAATTCGGTAGAAGTGATACAGTAATCAAAACCGTACTCCATTGCTACATATTCGCGTTGGATTCCAACCATACACTCGAGGACGCCGGTGGTGGTAGCTGATAGACATGCTACGATGACAAAGTGAGTRAAGAGGAGCATCGTTGGTTTGGATGCAGAGAGCCTGGAAGCAATCATTTTCCCGTTTTTCAACGGCTATTTCGAGCAGATGCAATATTTTCTAACTTTCGAAATGTGATAACGTTTATATGAAAAAAAAAGATCTAGAGAAATATGAAAACCTTTATGCAGTTTTGAATTTTCAAATATTGAATGATTTAGTCGGTGCTCAGAATGCAAATACGTCATTCGAAATCCGCGGCTAACAAAAAAAAAACCTATTCAAAAAAATACAAGTAACATCATTATGAACTTGAAACTTACAGAAAAAAAAATATTGCGAGATATTTTGTATCGGAAGACACATCTGCTACCAACTGCTCATTATGCGAGCGAGGGGTTGGTGTGGCATGCTGAGAGAGGATTATGTGGAAGTGAGGGCAGAAAGCAGGTGCAAAAAGGCTGATCAGATAATGACGTGGACAGAATGCACTAAAACTAACGGGTGAGAAGAACACGGAGGTCTGACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACATATTCGCGTTGGATTC</pcr_primer_p1>
		<pcr_primer_p2>AAAACTGCATAAAGGTTTTCATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TACATATTCGCGTTGGATTCCAACCATACACTCGAGGACGCCGGTGGTGGTAGCTGATAGACATGCTACGATGACAAAGTGAGTAAAGAGGAGCATCGTTGGTTTGGATGCAGAGAGCCTGGAAGCAATCATTTTCCCGTTTTTCAACGGCTATTTCGAGCAGATGCAATATTTTCTAACTTTCGAAATGTGATAACGTTTATATGAAAAAAAAAGATCTAGAGAAATATGAAAACCTTTATGCAGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TACATATTCGCGTTGGATTCCAACCATACACTCGAGGACGCCGGTGGTGGTAGCTGATAGACATGCTACGATGACAAAGTGAGTRAAGAGGAGCATCGTTGGTTTGGATGCAGAGAGCCTGGAAGCAATCATTTTCCCGTTTTTCAACGGCTATTTCGAGCAGATGCAATATTTTCTAACTTTCGAAATGTGATAACGTTTATATGAAAAAAAAAGATCTAGAGAAATATGAAAACCTTTATGCAGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38669</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>924262</contig_pos>
        <strand>+</strand>
        <context>CGCAGTCTGA[A/G]GAGCGGAAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGA</left_flank>
        <right_flank>GAGCGGAAGTTCCCGGGGTCGCTGCTGGAGCCGCAGAAGCTGGTGGAGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTGGAAAAATCTGAAATCGTTAGATCCTTTTGTTATATCGTATGTGTTCTAACATTAGCCTACTCAACCTATAAGTGCAATTTAAACCTAATTATCTAAGTTCCTTTGAGAGATATCAATGTTTGGTCAACCTAGTTAAAATACTTCTTAAAAACTAACAGTCCATGTGGTGTAGTTCAAGGGGAGTGCATGTGCGCGATTTTGTTCGGTCTGGAAAATATAAAATTGTTTTTTATAGCTGCATATCTTTTGTCTTACGTTTGGCCCTGTAGGGAACAAAATCAATTGTGGCATTTCTGGTCGGTTGGCTCGTCGGATAGCTCGAGCTCGGGCTCTGTCCACGAGTTGTGCTGGAGCAGGTACAGCTGGTACAACAGGCTGAGCTTCTTCGACTGGTTCGGGTTGAGCAGCTGGGTTGACGGCTGGAGAAGCTTGCGGAGTCGGTTGTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGAGGAGCGGAAGTTCCCGGGGTCGCTGCTGGAGCCGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTTCGTTGGGCACGCTCTGGGGTGGCACCGTTTCCTCTCCTCTCTAATTGAACACGTGCTTCTCTCATAAGACAGTCGTCTGAAAATACATGAATTGTCTGACAACAAAAGATATGAATATATGTGCAGTCCTTTCAGTTAGGAAGAATTTGAAATAGGCACTACAAAGAAGAATTCCTTCCAAAAATCAACACTACTCAATTTTGCTACATTCTCTCAAACTGACTGAGCATTTTTACCTTCTTCTTGTCTCCGTTCCTGCCGTGCCAATCGGTGGTGGACAGTTTCCTCCATCCGTTGTTGAATTTCGAGGAAAGGTGTTGGTACCGGCAGGCCCGCCTGATTGAAGTCGCCCATTGCTCCAAGGTATTCACGTAAAGACATATCCGGAAGTCCCGCTCGGAGTTGCTGCCATGAGACCCCATT</canonical>
            <polymorphic>GATTTGGAAAAATCTGAAATCGTTAGATCCTTTTGTTATATCGTATGTGTTCTAACATTAGCCTACTCAACCTATAAGTGCAATTTAAACCTAATTATCTAAGTTCCTTTGAGAGATATCAATGTTTGGTCAACCTAGTTAAAATACTTCTTAAAAACTAACAGTCCATGTGGTGTAGTTCAAGGGGAGTGCATGTGCGCGATTTTGTTCGGTCTGGAAAATATAAAATTGTTTTTTATAGCTGCATATCTTTTGTCTTACGTTTGGCCCTGTAGGGAACAAAATCAATTGTGGCATTTCTGGTCGGTTGGCTCGTCGGATAGCTCGAGCTCGGGCTCTGTCCACGAGTTGTGCTGGAGCAGGTACAGCTGGTACAACAGGCTGAGCTTCTTCGACTGGTTCGGGTTGAGCAGCTGGGTTGACGGCTGGAGAAGCTTGCGGAGTCGGTTGTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGARGAGCGGAAGTTCCCGGGGTCGCTGCTGGAGCCGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTTCGTTGGGCACGCTCTGGGGTGGCACCGTTTCCTCTCCTCTCTAATTGAACACGTGCTTCTCTCATAAGACAGTCGTCTGAAAATACATGAATTGTCTGACAACAAAAGATATGAATATATGTGCAGTCCTTTCAGTTAGGAAGAATTTGAAATAGGCACTACAAAGAAGAATTCCTTCCAAAAATCAACACTACTCAATTTTGCTACATTCTCTCAAACTGACTGAGCATTTTTACCTTCTTCTTGTCTCCGTTCCTGCCGTGCCAATCGGTGGTGGACAGTTTCCTCCATCCGTTGTTGAATTTCGAGGAAAGGTGTTGGTACCGGCAGGCCCGCCTGATTGAAGTCGCCCATTGCTCCAAGGTATTCACGTAAAGACATATCCGGAAGTCCCGCTCGGAGTTGCTGCCATGAGACCCCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>304 283 200 99 99 15</canonical_bands>
                <polymorphic_bands>319 283 200 99 99</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGGTACAGCTGGTACAACA</pcr_primer_p1>
		<pcr_primer_p2>AAGACAAGCTGGTTCATCAC</pcr_primer_p2>
		<pcr_amplicon_size>218</pcr_amplicon_size>
		<canonical_amplicon>CAGGTACAGCTGGTACAACAGGCTGAGCTTCTTCGACTGGTTCGGGTTGAGCAGCTGGGTTGACGGCTGGAGAAGCTTGCGGAGTCGGTTGTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGAGGAGCGGAAGTTCCCGGGGTCGCTGCTGGAGCCGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTT</canonical_amplicon>
		<polymorphic_amplicon>CAGGTACAGCTGGTACAACAGGCTGAGCTTCTTCGACTGGTTCGGGTTGAGCAGCTGGGTTGACGGCTGGAGAAGCTTGCGGAGTCGGTTGTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGARGAGCGGAAGTTCCCGGGGTCGCTGCTGGAGCCGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38670</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>924274</contig_pos>
        <strand>+</strand>
        <context>AGCGGAAGTT[C/T]CCGGGGYCGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGAGGAGCGGAAGTT</left_flank>
        <right_flank>CCGGGGTCGCTGCTGGAGCCGCAGAAGCTGGTGGAGCGGACGGTTGTGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGAAATCGTTAGATCCTTTTGTTATATCGTATGTGTTCTAACATTAGCCTACTCAACCTATAAGTGCAATTTAAACCTAATTATCTAAGTTCCTTTGAGAGATATCAATGTTTGGTCAACCTAGTTAAAATACTTCTTAAAAACTAACAGTCCATGTGGTGTAGTTCAAGGGGAGTGCATGTGCGCGATTTTGTTCGGTCTGGAAAATATAAAATTGTTTTTTATAGCTGCATATCTTTTGTCTTACGTTTGGCCCTGTAGGGAACAAAATCAATTGTGGCATTTCTGGTCGGTTGGCTCGTCGGATAGCTCGAGCTCGGGCTCTGTCCACGAGTTGTGCTGGAGCAGGTACAGCTGGTACAACAGGCTGAGCTTCTTCGACTGGTTCGGGTTGAGCAGCTGGGTTGACGGCTGGAGAAGCTTGCGGAGTCGGTTGTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGAGGAGCGGAAGTTCCCGGGGTCGCTGCTGGAGCCGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTTCGTTGGGCACGCTCTGGGGTGGCACCGTTTCCTCTCCTCTCTAATTGAACACGTGCTTCTCTCATAAGACAGTCGTCTGAAAATACATGAATTGTCTGACAACAAAAGATATGAATATATGTGCAGTCCTTTCAGTTAGGAAGAATTTGAAATAGGCACTACAAAGAAGAATTCCTTCCAAAAATCAACACTACTCAATTTTGCTACATTCTCTCAAACTGACTGAGCATTTTTACCTTCTTCTTGTCTCCGTTCCTGCCGTGCCAATCGGTGGTGGACAGTTTCCTCCATCCGTTGTTGAATTTCGAGGAAAGGTGTTGGTACCGGCAGGCCCGCCTGATTGAAGTCGCCCATTGCTCCAAGGTATTCACGTAAAGACATATCCGGAAGTCCCGCTCGGAGTTGCTGCCATGAGACCCCATTTCGAACATATTG</canonical>
            <polymorphic>TCTGAAATCGTTAGATCCTTTTGTTATATCGTATGTGTTCTAACATTAGCCTACTCAACCTATAAGTGCAATTTAAACCTAATTATCTAAGTTCCTTTGAGAGATATCAATGTTTGGTCAACCTAGTTAAAATACTTCTTAAAAACTAACAGTCCATGTGGTGTAGTTCAAGGGGAGTGCATGTGCGCGATTTTGTTCGGTCTGGAAAATATAAAATTGTTTTTTATAGCTGCATATCTTTTGTCTTACGTTTGGCCCTGTAGGGAACAAAATCAATTGTGGCATTTCTGGTCGGTTGGCTCGTCGGATAGCTCGAGCTCGGGCTCTGTCCACGAGTTGTGCTGGAGCAGGTACAGCTGGTACAACAGGCTGAGCTTCTTCGACTGGTTCGGGTTGAGCAGCTGGGTTGACGGCTGGAGAAGCTTGCGGAGTCGGTTGTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGAGGAGCGGAAGTTYCCGGGGTCGCTGCTGGAGCCGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTTCGTTGGGCACGCTCTGGGGTGGCACCGTTTCCTCTCCTCTCTAATTGAACACGTGCTTCTCTCATAAGACAGTCGTCTGAAAATACATGAATTGTCTGACAACAAAAGATATGAATATATGTGCAGTCCTTTCAGTTAGGAAGAATTTGAAATAGGCACTACAAAGAAGAATTCCTTCCAAAAATCAACACTACTCAATTTTGCTACATTCTCTCAAACTGACTGAGCATTTTTACCTTCTTCTTGTCTCCGTTCCTGCCGTGCCAATCGGTGGTGGACAGTTTCCTCCATCCGTTGTTGAATTTCGAGGAAAGGTGTTGGTACCGGCAGGCCCGCCTGATTGAAGTCGCCCATTGCTCCAAGGTATTCACGTAAAGACATATCCGGAAGTCCCGCTCGGAGTTGCTGCCATGAGACCCCATTTCGAACATATTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 312 182 6</canonical_bands>
                <polymorphic_bands>682 312 6</polymorphic_bands>
            </assay>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>502 498</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>502 498</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>500 423 76 1</canonical_bands>
                <polymorphic_bands>501 423 76</polymorphic_bands>
            </assay>
            <assay>
                <site>CCCGGG</site>
                <isoschizomers>
                    <enzyme>Cfr9I</enzyme>
                    <enzyme>PspAI</enzyme>
                    <enzyme>SmaI</enzyme>
                    <enzyme>XmaCI</enzyme>
                    <enzyme>XmaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGGTACAGCTGGTACAACA</pcr_primer_p1>
		<pcr_primer_p2>AAGACAAGCTGGTTCATCAC</pcr_primer_p2>
		<pcr_amplicon_size>218</pcr_amplicon_size>
		<canonical_amplicon>CAGGTACAGCTGGTACAACAGGCTGAGCTTCTTCGACTGGTTCGGGTTGAGCAGCTGGGTTGACGGCTGGAGAAGCTTGCGGAGTCGGTTGTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGAGGAGCGGAAGTTCCCGGGGTCGCTGCTGGAGCCGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTT</canonical_amplicon>
		<polymorphic_amplicon>CAGGTACAGCTGGTACAACAGGCTGAGCTTCTTCGACTGGTTCGGGTTGAGCAGCTGGGTTGACGGCTGGAGAAGCTTGCGGAGTCGGTTGTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGAGGAGCGGAAGTTYCCGGGGTCGCTGCTGGAGCCGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38671</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>924281</contig_pos>
        <strand>+</strand>
        <context>GTTYCCGGGG[C/T]CGCTGCTGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGATACTGTGGCCTGAGCTGACGCAGTCTGAGGAGCGGAAGTTCCCGGGG</left_flank>
        <right_flank>CGCTGCTGGAGCCGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTTAGATCCTTTTGTTATATCGTATGTGTTCTAACATTAGCCTACTCAACCTATAAGTGCAATTTAAACCTAATTATCTAAGTTCCTTTGAGAGATATCAATGTTTGGTCAACCTAGTTAAAATACTTCTTAAAAACTAACAGTCCATGTGGTGTAGTTCAAGGGGAGTGCATGTGCGCGATTTTGTTCGGTCTGGAAAATATAAAATTGTTTTTTATAGCTGCATATCTTTTGTCTTACGTTTGGCCCTGTAGGGAACAAAATCAATTGTGGCATTTCTGGTCGGTTGGCTCGTCGGATAGCTCGAGCTCGGGCTCTGTCCACGAGTTGTGCTGGAGCAGGTACAGCTGGTACAACAGGCTGAGCTTCTTCGACTGGTTCGGGTTGAGCAGCTGGGTTGACGGCTGGAGAAGCTTGCGGAGTCGGTTGTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGAGGAGCGGAAGTTCCCGGGGTCGCTGCTGGAGCCGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTTCGTTGGGCACGCTCTGGGGTGGCACCGTTTCCTCTCCTCTCTAATTGAACACGTGCTTCTCTCATAAGACAGTCGTCTGAAAATACATGAATTGTCTGACAACAAAAGATATGAATATATGTGCAGTCCTTTCAGTTAGGAAGAATTTGAAATAGGCACTACAAAGAAGAATTCCTTCCAAAAATCAACACTACTCAATTTTGCTACATTCTCTCAAACTGACTGAGCATTTTTACCTTCTTCTTGTCTCCGTTCCTGCCGTGCCAATCGGTGGTGGACAGTTTCCTCCATCCGTTGTTGAATTTCGAGGAAAGGTGTTGGTACCGGCAGGCCCGCCTGATTGAAGTCGCCCATTGCTCCAAGGTATTCACGTAAAGACATATCCGGAAGTCCCGCTCGGAGTTGCTGCCATGAGACCCCATTTCGAACATATTGTCGTTGA</canonical>
            <polymorphic>TCGTTAGATCCTTTTGTTATATCGTATGTGTTCTAACATTAGCCTACTCAACCTATAAGTGCAATTTAAACCTAATTATCTAAGTTCCTTTGAGAGATATCAATGTTTGGTCAACCTAGTTAAAATACTTCTTAAAAACTAACAGTCCATGTGGTGTAGTTCAAGGGGAGTGCATGTGCGCGATTTTGTTCGGTCTGGAAAATATAAAATTGTTTTTTATAGCTGCATATCTTTTGTCTTACGTTTGGCCCTGTAGGGAACAAAATCAATTGTGGCATTTCTGGTCGGTTGGCTCGTCGGATAGCTCGAGCTCGGGCTCTGTCCACGAGTTGTGCTGGAGCAGGTACAGCTGGTACAACAGGCTGAGCTTCTTCGACTGGTTCGGGTTGAGCAGCTGGGTTGACGGCTGGAGAAGCTTGCGGAGTCGGTTGTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGAGGAGCGGAAGTTCCCGGGGYCGCTGCTGGAGCCGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTTCGTTGGGCACGCTCTGGGGTGGCACCGTTTCCTCTCCTCTCTAATTGAACACGTGCTTCTCTCATAAGACAGTCGTCTGAAAATACATGAATTGTCTGACAACAAAAGATATGAATATATGTGCAGTCCTTTCAGTTAGGAAGAATTTGAAATAGGCACTACAAAGAAGAATTCCTTCCAAAAATCAACACTACTCAATTTTGCTACATTCTCTCAAACTGACTGAGCATTTTTACCTTCTTCTTGTCTCCGTTCCTGCCGTGCCAATCGGTGGTGGACAGTTTCCTCCATCCGTTGTTGAATTTCGAGGAAAGGTGTTGGTACCGGCAGGCCCGCCTGATTGAAGTCGCCCATTGCTCCAAGGTATTCACGTAAAGACATATCCGGAAGTCCCGCTCGGAGTTGCTGCCATGAGACCCCATTTCGAACATATTGTCGTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGTACAGCTGGTACAACA</pcr_primer_p1>
		<pcr_primer_p2>AAGACAAGCTGGTTCATCAC</pcr_primer_p2>
		<pcr_amplicon_size>218</pcr_amplicon_size>
		<canonical_amplicon>CAGGTACAGCTGGTACAACAGGCTGAGCTTCTTCGACTGGTTCGGGTTGAGCAGCTGGGTTGACGGCTGGAGAAGCTTGCGGAGTCGGTTGTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGAGGAGCGGAAGTTCCCGGGGTCGCTGCTGGAGCCGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTT</canonical_amplicon>
		<polymorphic_amplicon>CAGGTACAGCTGGTACAACAGGCTGAGCTTCTTCGACTGGTTCGGGTTGAGCAGCTGGGTTGACGGCTGGAGAAGCTTGCGGAGTCGGTTGTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGAGGAGCGGAAGTTCCCGGGGYCGCTGCTGGAGCCGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38672</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>924381</contig_pos>
        <strand>+</strand>
        <context>CTCTCCTCTC[C/T]AATTGAACAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTTGTCTTCGTTGGGCACGCTCTGGGGTGGCACCGTTTCCTCTCCTCTC</left_flank>
        <right_flank>AATTGAACACGTGCTTCTCTCATAAGACAGTCGTCTGAAAATACATGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATGTTTGGTCAACCTAGTTAAAATACTTCTTAAAAACTAACAGTCCATGTGGTGTAGTTCAAGGGGAGTGCATGTGCGCGATTTTGTTCGGTCTGGAAAATATAAAATTGTTTTTTATAGCTGCATATCTTTTGTCTTACGTTTGGCCCTGTAGGGAACAAAATCAATTGTGGCATTTCTGGTCGGTTGGCTCGTCGGATAGCTCGAGCTCGGGCTCTGTCCACGAGTTGTGCTGGAGCAGGTACAGCTGGTACAACAGGCTGAGCTTCTTCGACTGGTTCGGGTTGAGCAGCTGGGTTGACGGCTGGAGAAGCTTGCGGAGTCGGTTGTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGAGGAGCGGAAGTTCCCGGGGTCGCTGCTGGAGCCGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTTCGTTGGGCACGCTCTGGGGTGGCACCGTTTCCTCTCCTCTCTAATTGAACACGTGCTTCTCTCATAAGACAGTCGTCTGAAAATACATGAATTGTCTGACAACAAAAGATATGAATATATGTGCAGTCCTTTCAGTTAGGAAGAATTTGAAATAGGCACTACAAAGAAGAATTCCTTCCAAAAATCAACACTACTCAATTTTGCTACATTCTCTCAAACTGACTGAGCATTTTTACCTTCTTCTTGTCTCCGTTCCTGCCGTGCCAATCGGTGGTGGACAGTTTCCTCCATCCGTTGTTGAATTTCGAGGAAAGGTGTTGGTACCGGCAGGCCCGCCTGATTGAAGTCGCCCATTGCTCCAAGGTATTCACGTAAAGACATATCCGGAAGTCCCGCTCGGAGTTGCTGCCATGAGACCCCATTTCGAACATATTGTCGTTGATGATTTTGTGGTTGTTGTTGTGGTCGAATGAGATTTCTTGGAGCAATCGGTTGGGGGTGCTGGTTTTGCACATTATACATGGGACGGTAGCGTTGCACGA</canonical>
            <polymorphic>CAATGTTTGGTCAACCTAGTTAAAATACTTCTTAAAAACTAACAGTCCATGTGGTGTAGTTCAAGGGGAGTGCATGTGCGCGATTTTGTTCGGTCTGGAAAATATAAAATTGTTTTTTATAGCTGCATATCTTTTGTCTTACGTTTGGCCCTGTAGGGAACAAAATCAATTGTGGCATTTCTGGTCGGTTGGCTCGTCGGATAGCTCGAGCTCGGGCTCTGTCCACGAGTTGTGCTGGAGCAGGTACAGCTGGTACAACAGGCTGAGCTTCTTCGACTGGTTCGGGTTGAGCAGCTGGGTTGACGGCTGGAGAAGCTTGCGGAGTCGGTTGTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGAGGAGCGGAAGTTCCCGGGGTCGCTGCTGGAGCCGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTTCGTTGGGCACGCTCTGGGGTGGCACCGTTTCCTCTCCTCTCYAATTGAACACGTGCTTCTCTCATAAGACAGTCGTCTGAAAATACATGAATTGTCTGACAACAAAAGATATGAATATATGTGCAGTCCTTTCAGTTAGGAAGAATTTGAAATAGGCACTACAAAGAAGAATTCCTTCCAAAAATCAACACTACTCAATTTTGCTACATTCTCTCAAACTGACTGAGCATTTTTACCTTCTTCTTGTCTCCGTTCCTGCCGTGCCAATCGGTGGTGGACAGTTTCCTCCATCCGTTGTTGAATTTCGAGGAAAGGTGTTGGTACCGGCAGGCCCGCCTGATTGAAGTCGCCCATTGCTCCAAGGTATTCACGTAAAGACATATCCGGAAGTCCCGCTCGGAGTTGCTGCCATGAGACCCCATTTCGAACATATTGTCGTTGATGATTTTGTGGTTGTTGTTGTGGTCGAATGAGATTTCTTGGAGCAATCGGTTGGGGGTGCTGGTTTTGCACATTATACATGGGACGGTAGCGTTGCACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGTACAGCTGGTACAACA</pcr_primer_p1>
		<pcr_primer_p2>CTAACTGAAAGGACTGCACATA</pcr_primer_p2>
		<pcr_amplicon_size>357</pcr_amplicon_size>
		<canonical_amplicon>CAGGTACAGCTGGTACAACAGGCTGAGCTTCTTCGACTGGTTCGGGTTGAGCAGCTGGGTTGACGGCTGGAGAAGCTTGCGGAGTCGGTTGTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGAGGAGCGGAAGTTCCCGGGGTCGCTGCTGGAGCCGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTTCGTTGGGCACGCTCTGGGGTGGCACCGTTTCCTCTCCTCTCTAATTGAACACGTGCTTCTCTCATAAGACAGTCGTCTGAAAATACATGAATTGTCTGACAACAAAAGATATGAATATATGTGCAGTCCTTTCAGTTAG</canonical_amplicon>
		<polymorphic_amplicon>CAGGTACAGCTGGTACAACAGGCTGAGCTTCTTCGACTGGTTCGGGTTGAGCAGCTGGGTTGACGGCTGGAGAAGCTTGCGGAGTCGGTTGTTCTGAACGCGCTTGTGGAGATACTGTGGCCTGAGCTGACGCAGTCTGAGGAGCGGAAGTTCCCGGGGTCGCTGCTGGAGCCGCAGAAGCTGGTGGAGCGGACGGTTGTGATGAACCAGCTTGTCTTCGTTGGGCACGCTCTGGGGTGGCACCGTTTCCTCTCCTCTCYAATTGAACACGTGCTTCTCTCATAAGACAGTCGTCTGAAAATACATGAATTGTCTGACAACAAAAGATATGAATATATGTGCAGTCCTTTCAGTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38673</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>946736</contig_pos>
        <strand>+</strand>
        <context>CAACGATCCT[A/T]TGCTGAACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTCAGGTGTGCCGCTCCCGGTAACGACAACTATTTGTTCAACGATCCT</left_flank>
        <right_flank>TGCTGAACAAAAAACTCCGACCGGATCAAATCCGTCTTCTGAAGTGGTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTACACGTCCAGTTTACTTCCGACCAACAGAATGTCGGAAAAGTTGACAAATGCGATGCCCGAGGCGTACAAAAACCAAGTGGAAATACGTGTTGTGGCAAATGAAATGAGAAATGGGACCATTGGCGAGAGATTGACCGATTTCTGCAAAAAATACAACATCGCTGTACCACAACACAAGTTTCGTTATAAGATGATTCTTGTGTTTCTGAAGCCTGATGAAGCAGAAGAAGATCAAGACAAGACAAATGATGAAGCATTGATTTTCATATACACCGTCCACGAGTTTGTAGCAGGCGAGGAAACAACACCGAAGTCAAAATGGACCGTTCTTGGATATTTGGACTCCAACCGTTATATCACGGACGGTATCAAGAGACAACTCATATTTCAAGGAATTGTCTTATCGTACTTTTTGTATGCAGCATCCGCTGGCTACGAAATGTGCCATTTCAGGTGTGCCGCTCCCGGTAACGACAACTATTTGTTCAACGATCCTATGCTGAACAAAAAACTCCGACCGGATCAAATCCGTCTTCTGAAGTGGTACAGTAACATCTTGAACAGTGGAAAGACACGCGGGATCATCAAAAAATGGGAACGCAAAAGTGTGGATTCGAAGGGCATGTCACTACAAGATCTTCTTGAAAAATTCTACTTGGATGGCGGATATTGGCCGAAACGAATAGAGAAAATTTTGGAGAAAGAAATGAAGCCAGAAAAACTTCGCGAGGAACTGGTGAAAGAGATCAGCAATGACAGCGATGCTTTTTTCGTCGACTTGTCAAAACAAGATCTCATCAAAGACTCAACTCCCGTCATACCCACAATGGATATGACACGCTCGAAAGAGGACTTTCTGGCGGTTCAGGTCCAAAGCGGACTGCGGTACTCAACAAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCA</canonical>
            <polymorphic>GTACACGTCCAGTTTACTTCCGACCAACAGAATGTCGGAAAAGTTGACAAATGCGATGCCCGAGGCGTACAAAAACCAAGTGGAAATACGTGTTGTGGCAAATGAAATGAGAAATGGGACCATTGGCGAGAGATTGACCGATTTCTGCAAAAAATACAACATCGCTGTACCACAACACAAGTTTCGTTATAAGATGATTCTTGTGTTTCTGAAGCCTGATGAAGCAGAAGAAGATCAAGACAAGACAAATGATGAAGCATTGATTTTCATATACACCGTCCACGAGTTTGTAGCAGGCGAGGAAACAACACCGAAGTCAAAATGGACCGTTCTTGGATATTTGGACTCCAACCGTTATATCACGGACGGTATCAAGAGACAACTCATATTTCAAGGAATTGTCTTATCGTACTTTTTGTATGCAGCATCCGCTGGCTACGAAATGTGCCATTTCAGGTGTGCCGCTCCCGGTAACGACAACTATTTGTTCAACGATCCTWTGCTGAACAAAAAACTCCGACCGGATCAAATCCGTCTTCTGAAGTGGTACAGTAACATCTTGAACAGTGGAAAGACACGCGGGATCATCAAAAAATGGGAACGCAAAAGTGTGGATTCGAAGGGCATGTCACTACAAGATCTTCTTGAAAAATTCTACTTGGATGGCGGATATTGGCCGAAACGAATAGAGAAAATTTTGGAGAAAGAAATGAAGCCAGAAAAACTTCGCGAGGAACTGGTGAAAGAGATCAGCAATGACAGCGATGCTTTTTTCGTCGACTTGTCAAAACAAGATCTCATCAAAGACTCAACTCCCGTCATACCCACAATGGATATGACACGCTCGAAAGAGGACTTTCTGGCGGTTCAGGTCCAAAGCGGACTGCGGTACTCAACAAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGTTCTTGGATATTTGGACTC</pcr_primer_p1>
		<pcr_primer_p2>CTTTCCACTGTTCAAGATGTTAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CGTTCTTGGATATTTGGACTCCAACCGTTATATCACGGACGGTATCAAGAGACAACTCATATTTCAAGGAATTGTCTTATCGTACTTTTTGTATGCAGCATCCGCTGGCTACGAAATGTGCCATTTCAGGTGTGCCGCTCCCGGTAACGACAACTATTTGTTCAACGATCCTATGCTGAACAAAAAACTCCGACCGGATCAAATCCGTCTTCTGAAGTGGTACAGTAACATCTTGAACAGTGGAAAG</canonical_amplicon>
		<polymorphic_amplicon>CGTTCTTGGATATTTGGACTCCAACCGTTATATCACGGACGGTATCAAGAGACAACTCATATTTCAAGGAATTGTCTTATCGTACTTTTTGTATGCAGCATCCGCTGGCTACGAAATGTGCCATTTCAGGTGTGCCGCTCCCGGTAACGACAACTATTTGTTCAACGATCCTWTGCTGAACAAAAAACTCCGACCGGATCAAATCCGTCTTCTGAAGTGGTACAGTAACATCTTGAACAGTGGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38674</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>946882</contig_pos>
        <strand>+</strand>
        <context>AAGATCTTCT[C/T]GRAAAATTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGGAACGCAAAAGTGTGGATTCGAAGGGCATGTCACTACAAGATCTTCT</left_flank>
        <right_flank>GAAAAATTCTACTTGGATGGCGGATATTGGCCGAAACGAATAGAGAAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAAAAAATACAACATCGCTGTACCACAACACAAGTTTCGTTATAAGATGATTCTTGTGTTTCTGAAGCCTGATGAAGCAGAAGAAGATCAAGACAAGACAAATGATGAAGCATTGATTTTCATATACACCGTCCACGAGTTTGTAGCAGGCGAGGAAACAACACCGAAGTCAAAATGGACCGTTCTTGGATATTTGGACTCCAACCGTTATATCACGGACGGTATCAAGAGACAACTCATATTTCAAGGAATTGTCTTATCGTACTTTTTGTATGCAGCATCCGCTGGCTACGAAATGTGCCATTTCAGGTGTGCCGCTCCCGGTAACGACAACTATTTGTTCAACGATCCTATGCTGAACAAAAAACTCCGACCGGATCAAATCCGTCTTCTGAAGTGGTACAGTAACATCTTGAACAGTGGAAAGACACGCGGGATCATCAAAAAATGGGAACGCAAAAGTGTGGATTCGAAGGGCATGTCACTACAAGATCTTCTTGAAAAATTCTACTTGGATGGCGGATATTGGCCGAAACGAATAGAGAAAATTTTGGAGAAAGAAATGAAGCCAGAAAAACTTCGCGAGGAACTGGTGAAAGAGATCAGCAATGACAGCGATGCTTTTTTCGTCGACTTGTCAAAACAAGATCTCATCAAAGACTCAACTCCCGTCATACCCACAATGGATATGACACGCTCGAAAGAGGACTTTCTGGCGGTTCAGGTCCAAAGCGGACTGCGGTACTCAACAAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTT</canonical>
            <polymorphic>GCAAAAAATACAACATCGCTGTACCACAACACAAGTTTCGTTATAAGATGATTCTTGTGTTTCTGAAGCCTGATGAAGCAGAAGAAGATCAAGACAAGACAAATGATGAAGCATTGATTTTCATATACACCGTCCACGAGTTTGTAGCAGGCGAGGAAACAACACCGAAGTCAAAATGGACCGTTCTTGGATATTTGGACTCCAACCGTTATATCACGGACGGTATCAAGAGACAACTCATATTTCAAGGAATTGTCTTATCGTACTTTTTGTATGCAGCATCCGCTGGCTACGAAATGTGCCATTTCAGGTGTGCCGCTCCCGGTAACGACAACTATTTGTTCAACGATCCTATGCTGAACAAAAAACTCCGACCGGATCAAATCCGTCTTCTGAAGTGGTACAGTAACATCTTGAACAGTGGAAAGACACGCGGGATCATCAAAAAATGGGAACGCAAAAGTGTGGATTCGAAGGGCATGTCACTACAAGATCTTCTYGAAAAATTCTACTTGGATGGCGGATATTGGCCGAAACGAATAGAGAAAATTTTGGAGAAAGAAATGAAGCCAGAAAAACTTCGCGAGGAACTGGTGAAAGAGATCAGCAATGACAGCGATGCTTTTTTCGTCGACTTGTCAAAACAAGATCTCATCAAAGACTCAACTCCCGTCATACCCACAATGGATATGACACGCTCGAAAGAGGACTTTCTGGCGGTTCAGGTCCAAAGCGGACTGCGGTACTCAACAAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTTGAACAGTGGAAAGACAC</pcr_primer_p1>
		<pcr_primer_p2>CTTTGATGAGATCTTGTTTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTTGAACAGTGGAAAGACACGCGGGATCATCAAAAAATGGGAACGCAAAAGTGTGGATTCGAAGGGCATGTCACTACAAGATCTTCTTGAAAAATTCTACTTGGATGGCGGATATTGGCCGAAACGAATAGAGAAAATTTTGGAGAAAGAAATGAAGCCAGAAAAACTTCGCGAGGAACTGGTGAAAGAGATCAGCAATGACAGCGATGCTTTTTTCGTCGACTTGTCAAAACAAGATCTCATCAAAG</canonical_amplicon>
		<polymorphic_amplicon>ATCTTGAACAGTGGAAAGACACGCGGGATCATCAAAAAATGGGAACGCAAAAGTGTGGATTCGAAGGGCATGTCACTACAAGATCTTCTYGAAAAATTCTACTTGGATGGCGGATATTGGCCGAAACGAATAGAGAAAATTTTGGAGAAAGAAATGAAGCCAGAAAAACTTCGCGAGGAACTGGTGAAAGAGATCAGCAATGACAGCGATGCTTTTTTCGTCGACTTGTCAAAACAAGATCTCATCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38675</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>946884</contig_pos>
        <strand>+</strand>
        <context>GATCTTCTYG[A/G]AAAATTCTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAACGCAAAAGTGTGGATTCGAAGGGCATGTCACTACAAGATCTTCTTG</left_flank>
        <right_flank>AAAATTCTACTTGGATGGCGGATATTGGCCGAAACGAATAGAGAAAATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAATACAACATCGCTGTACCACAACACAAGTTTCGTTATAAGATGATTCTTGTGTTTCTGAAGCCTGATGAAGCAGAAGAAGATCAAGACAAGACAAATGATGAAGCATTGATTTTCATATACACCGTCCACGAGTTTGTAGCAGGCGAGGAAACAACACCGAAGTCAAAATGGACCGTTCTTGGATATTTGGACTCCAACCGTTATATCACGGACGGTATCAAGAGACAACTCATATTTCAAGGAATTGTCTTATCGTACTTTTTGTATGCAGCATCCGCTGGCTACGAAATGTGCCATTTCAGGTGTGCCGCTCCCGGTAACGACAACTATTTGTTCAACGATCCTATGCTGAACAAAAAACTCCGACCGGATCAAATCCGTCTTCTGAAGTGGTACAGTAACATCTTGAACAGTGGAAAGACACGCGGGATCATCAAAAAATGGGAACGCAAAAGTGTGGATTCGAAGGGCATGTCACTACAAGATCTTCTTGAAAAATTCTACTTGGATGGCGGATATTGGCCGAAACGAATAGAGAAAATTTTGGAGAAAGAAATGAAGCCAGAAAAACTTCGCGAGGAACTGGTGAAAGAGATCAGCAATGACAGCGATGCTTTTTTCGTCGACTTGTCAAAACAAGATCTCATCAAAGACTCAACTCCCGTCATACCCACAATGGATATGACACGCTCGAAAGAGGACTTTCTGGCGGTTCAGGTCCAAAGCGGACTGCGGTACTCAACAAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTTCT</canonical>
            <polymorphic>AAAAAATACAACATCGCTGTACCACAACACAAGTTTCGTTATAAGATGATTCTTGTGTTTCTGAAGCCTGATGAAGCAGAAGAAGATCAAGACAAGACAAATGATGAAGCATTGATTTTCATATACACCGTCCACGAGTTTGTAGCAGGCGAGGAAACAACACCGAAGTCAAAATGGACCGTTCTTGGATATTTGGACTCCAACCGTTATATCACGGACGGTATCAAGAGACAACTCATATTTCAAGGAATTGTCTTATCGTACTTTTTGTATGCAGCATCCGCTGGCTACGAAATGTGCCATTTCAGGTGTGCCGCTCCCGGTAACGACAACTATTTGTTCAACGATCCTATGCTGAACAAAAAACTCCGACCGGATCAAATCCGTCTTCTGAAGTGGTACAGTAACATCTTGAACAGTGGAAAGACACGCGGGATCATCAAAAAATGGGAACGCAAAAGTGTGGATTCGAAGGGCATGTCACTACAAGATCTTCTTGRAAAATTCTACTTGGATGGCGGATATTGGCCGAAACGAATAGAGAAAATTTTGGAGAAAGAAATGAAGCCAGAAAAACTTCGCGAGGAACTGGTGAAAGAGATCAGCAATGACAGCGATGCTTTTTTCGTCGACTTGTCAAAACAAGATCTCATCAAAGACTCAACTCCCGTCATACCCACAATGGATATGACACGCTCGAAAGAGGACTTTCTGGCGGTTCAGGTCCAAAGCGGACTGCGGTACTCAACAAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>420 186 137 88 85 84</canonical_bands>
                <polymorphic_bands>420 186 169 137 88</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTTGAACAGTGGAAAGACAC</pcr_primer_p1>
		<pcr_primer_p2>CTTTGATGAGATCTTGTTTTGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTTGAACAGTGGAAAGACACGCGGGATCATCAAAAAATGGGAACGCAAAAGTGTGGATTCGAAGGGCATGTCACTACAAGATCTTCTTGAAAAATTCTACTTGGATGGCGGATATTGGCCGAAACGAATAGAGAAAATTTTGGAGAAAGAAATGAAGCCAGAAAAACTTCGCGAGGAACTGGTGAAAGAGATCAGCAATGACAGCGATGCTTTTTTCGTCGACTTGTCAAAACAAGATCTCATCAAAG</canonical_amplicon>
		<polymorphic_amplicon>ATCTTGAACAGTGGAAAGACACGCGGGATCATCAAAAAATGGGAACGCAAAAGTGTGGATTCGAAGGGCATGTCACTACAAGATCTTCTTGRAAAATTCTACTTGGATGGCGGATATTGGCCGAAACGAATAGAGAAAATTTTGGAGAAAGAAATGAAGCCAGAAAAACTTCGCGAGGAACTGGTGAAAGAGATCAGCAATGACAGCGATGCTTTTTTCGTCGACTTGTCAAAACAAGATCTCATCAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38676</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>947016</contig_pos>
        <strand>+</strand>
        <context>TTTTTCGTCG[A/T]CTTGTCAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGAGGAACTGGTGAAAGAGATCAGCAATGACAGCGATGCTTTTTTCGTCG</left_flank>
        <right_flank>CTTGTCAAAACAAGATCTCATCAAAGACTCAACTCCCGTCATACCCACAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACGAGTTTGTAGCAGGCGAGGAAACAACACCGAAGTCAAAATGGACCGTTCTTGGATATTTGGACTCCAACCGTTATATCACGGACGGTATCAAGAGACAACTCATATTTCAAGGAATTGTCTTATCGTACTTTTTGTATGCAGCATCCGCTGGCTACGAAATGTGCCATTTCAGGTGTGCCGCTCCCGGTAACGACAACTATTTGTTCAACGATCCTATGCTGAACAAAAAACTCCGACCGGATCAAATCCGTCTTCTGAAGTGGTACAGTAACATCTTGAACAGTGGAAAGACACGCGGGATCATCAAAAAATGGGAACGCAAAAGTGTGGATTCGAAGGGCATGTCACTACAAGATCTTCTTGAAAAATTCTACTTGGATGGCGGATATTGGCCGAAACGAATAGAGAAAATTTTGGAGAAAGAAATGAAGCCAGAAAAACTTCGCGAGGAACTGGTGAAAGAGATCAGCAATGACAGCGATGCTTTTTTCGTCGACTTGTCAAAACAAGATCTCATCAAAGACTCAACTCCCGTCATACCCACAATGGATATGACACGCTCGAAAGAGGACTTTCTGGCGGTTCAGGTCCAAAGCGGACTGCGGTACTCAACAAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTTCTCATTGATTTCACGCCAAATACACTATGTGCCCAGTTGTATTCTCTCATATTTCTTCAATCACAGCTCAATAACTCTATGTACAGGTAAAAAGTTTTTTTGTAATTTTGAAAATGAATGAAAAATAGCCGTTA</canonical>
            <polymorphic>CACGAGTTTGTAGCAGGCGAGGAAACAACACCGAAGTCAAAATGGACCGTTCTTGGATATTTGGACTCCAACCGTTATATCACGGACGGTATCAAGAGACAACTCATATTTCAAGGAATTGTCTTATCGTACTTTTTGTATGCAGCATCCGCTGGCTACGAAATGTGCCATTTCAGGTGTGCCGCTCCCGGTAACGACAACTATTTGTTCAACGATCCTATGCTGAACAAAAAACTCCGACCGGATCAAATCCGTCTTCTGAAGTGGTACAGTAACATCTTGAACAGTGGAAAGACACGCGGGATCATCAAAAAATGGGAACGCAAAAGTGTGGATTCGAAGGGCATGTCACTACAAGATCTTCTTGAAAAATTCTACTTGGATGGCGGATATTGGCCGAAACGAATAGAGAAAATTTTGGAGAAAGAAATGAAGCCAGAAAAACTTCGCGAGGAACTGGTGAAAGAGATCAGCAATGACAGCGATGCTTTTTTCGTCGWCTTGTCAAAACAAGATCTCATCAAAGACTCAACTCCCGTCATACCCACAATGGATATGACACGCTCGAAAGAGGACTTTCTGGCGGTTCAGGTCCAAAGCGGACTGCGGTACTCAACAAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTTCTCATTGATTTCACGCCAAATACACTATGTGCCCAGTTGTATTCTCTCATATTTCTTCAATCACAGCTCAATAACTCTATGTACAGGTAAAAAGTTTTTTTGTAATTTTGAAAATGAATGAAAAATAGCCGTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTMKAC</site>
                <isoschizomers>
                    <enzyme>AccI</enzyme>
                    <enzyme>FblI</enzyme>
                    <enzyme>XmiI</enzyme>
                </isoschizomers>
                <canonical_bands>497 269 234</canonical_bands>
                <polymorphic_bands>766 234</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>434 338 160 68</canonical_bands>
                <polymorphic_bands>434 338 228</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>498 280 222</canonical_bands>
                <polymorphic_bands>778 222</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 269 222 11</canonical_bands>
                <polymorphic_bands>767 222 11</polymorphic_bands>
            </assay>
            <assay>
                <site>GTCGAC</site>
                <isoschizomers>
                    <enzyme>SalI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAATAGAGAAAATTTTGGAGA</pcr_primer_p1>
		<pcr_primer_p2>GCTGTTGAATACCAGAGAAGAC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CGAATAGAGAAAATTTTGGAGAAAGAAATGAAGCCAGAAAAACTTCGCGAGGAACTGGTGAAAGAGATCAGCAATGACAGCGATGCTTTTTTCGTCGACTTGTCAAAACAAGATCTCATCAAAGACTCAACTCCCGTCATACCCACAATGGATATGACACGCTCGAAAGAGGACTTTCTGGCGGTTCAGGTCCAAAGCGGACTGCGGTACTCAACAAATCGTCTTCTCTGGTATTCAACAGC</canonical_amplicon>
		<polymorphic_amplicon>CGAATAGAGAAAATTTTGGAGAAAGAAATGAAGCCAGAAAAACTTCGCGAGGAACTGGTGAAAGAGATCAGCAATGACAGCGATGCTTTTTTCGTCGWCTTGTCAAAACAAGATCTCATCAAAGACTCAACTCCCGTCATACCCACAATGGATATGACACGCTCGAAAGAGGACTTTCTGGCGGTTCAGGTCCAAAGCGGACTGCGGTACTCAACAAATCGTCTTCTCTGGTATTCAACAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38677</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>947115</contig_pos>
        <strand>+</strand>
        <context>CAGGTCCAAA[A/G]CGGACTGCGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATGGATATGACACGCTCGAAAGAGGACTTTCTGGCGGTTCAGGTCCAAA</left_flank>
        <right_flank>CGGACTGCGGTACTCAACAAATCGTCTTCTCTGGTATTCAACAGCAAGGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAACTCATATTTCAAGGAATTGTCTTATCGTACTTTTTGTATGCAGCATCCGCTGGCTACGAAATGTGCCATTTCAGGTGTGCCGCTCCCGGTAACGACAACTATTTGTTCAACGATCCTATGCTGAACAAAAAACTCCGACCGGATCAAATCCGTCTTCTGAAGTGGTACAGTAACATCTTGAACAGTGGAAAGACACGCGGGATCATCAAAAAATGGGAACGCAAAAGTGTGGATTCGAAGGGCATGTCACTACAAGATCTTCTTGAAAAATTCTACTTGGATGGCGGATATTGGCCGAAACGAATAGAGAAAATTTTGGAGAAAGAAATGAAGCCAGAAAAACTTCGCGAGGAACTGGTGAAAGAGATCAGCAATGACAGCGATGCTTTTTTCGTCGACTTGTCAAAACAAGATCTCATCAAAGACTCAACTCCCGTCATACCCACAATGGATATGACACGCTCGAAAGAGGACTTTCTGGCGGTTCAGGTCCAAAGCGGACTGCGGTACTCAACAAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTTCTCATTGATTTCACGCCAAATACACTATGTGCCCAGTTGTATTCTCTCATATTTCTTCAATCACAGCTCAATAACTCTATGTACAGGTAAAAAGTTTTTTTGTAATTTTGAAAATGAATGAAAAATAGCCGTTAGTTTACAGGCCAACCTTCCAAATTACTCTTCCGAATCATCCCAATCTCGCTCGCTCATCACCATGATAGTCTTCTTCCAGGTCTTCGTATAATTCAGTT</canonical>
            <polymorphic>CAACTCATATTTCAAGGAATTGTCTTATCGTACTTTTTGTATGCAGCATCCGCTGGCTACGAAATGTGCCATTTCAGGTGTGCCGCTCCCGGTAACGACAACTATTTGTTCAACGATCCTATGCTGAACAAAAAACTCCGACCGGATCAAATCCGTCTTCTGAAGTGGTACAGTAACATCTTGAACAGTGGAAAGACACGCGGGATCATCAAAAAATGGGAACGCAAAAGTGTGGATTCGAAGGGCATGTCACTACAAGATCTTCTTGAAAAATTCTACTTGGATGGCGGATATTGGCCGAAACGAATAGAGAAAATTTTGGAGAAAGAAATGAAGCCAGAAAAACTTCGCGAGGAACTGGTGAAAGAGATCAGCAATGACAGCGATGCTTTTTTCGTCGACTTGTCAAAACAAGATCTCATCAAAGACTCAACTCCCGTCATACCCACAATGGATATGACACGCTCGAAAGAGGACTTTCTGGCGGTTCAGGTCCAAARCGGACTGCGGTACTCAACAAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTTCTCATTGATTTCACGCCAAATACACTATGTGCCCAGTTGTATTCTCTCATATTTCTTCAATCACAGCTCAATAACTCTATGTACAGGTAAAAAGTTTTTTTGTAATTTTGAAAATGAATGAAAAATAGCCGTTAGTTTACAGGCCAACCTTCCAAATTACTCTTCCGAATCATCCCAATCTCGCTCGCTCATCACCATGATAGTCTTCTTCCAGGTCTTCGTATAATTCAGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTCATCAAAGACTCAACTCC</pcr_primer_p1>
		<pcr_primer_p2>GGTGATGATCAGAATCAGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTCATCAAAGACTCAACTCCCGTCATACCCACAATGGATATGACACGCTCGAAAGAGGACTTTCTGGCGGTTCAGGTCCAAAGCGGACTGCGGTACTCAACAAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACC</canonical_amplicon>
		<polymorphic_amplicon>ATCTCATCAAAGACTCAACTCCCGTCATACCCACAATGGATATGACACGCTCGAAAGAGGACTTTCTGGCGGTTCAGGTCCAAARCGGACTGCGGTACTCAACAAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38678</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>947171</contig_pos>
        <strand>+</strand>
        <context>AAGGACCATC[C/T]AGCTTTTGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCGGTACTCAACAAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATC</left_flank>
        <right_flank>AGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTACGAAATGTGCCATTTCAGGTGTGCCGCTCCCGGTAACGACAACTATTTGTTCAACGATCCTATGCTGAACAAAAAACTCCGACCGGATCAAATCCGTCTTCTGAAGTGGTACAGTAACATCTTGAACAGTGGAAAGACACGCGGGATCATCAAAAAATGGGAACGCAAAAGTGTGGATTCGAAGGGCATGTCACTACAAGATCTTCTTGAAAAATTCTACTTGGATGGCGGATATTGGCCGAAACGAATAGAGAAAATTTTGGAGAAAGAAATGAAGCCAGAAAAACTTCGCGAGGAACTGGTGAAAGAGATCAGCAATGACAGCGATGCTTTTTTCGTCGACTTGTCAAAACAAGATCTCATCAAAGACTCAACTCCCGTCATACCCACAATGGATATGACACGCTCGAAAGAGGACTTTCTGGCGGTTCAGGTCCAAAGCGGACTGCGGTACTCAACAAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTTCTCATTGATTTCACGCCAAATACACTATGTGCCCAGTTGTATTCTCTCATATTTCTTCAATCACAGCTCAATAACTCTATGTACAGGTAAAAAGTTTTTTTGTAATTTTGAAAATGAATGAAAAATAGCCGTTAGTTTACAGGCCAACCTTCCAAATTACTCTTCCGAATCATCCCAATCTCGCTCGCTCATCACCATGATAGTCTTCTTCCAGGTCTTCGTATAATTCAGTTCAACCTCTCGATTTTCACTTATAAAATTACTTCCATCTTCAAGCAGCTCTTTTTTG</canonical>
            <polymorphic>CTACGAAATGTGCCATTTCAGGTGTGCCGCTCCCGGTAACGACAACTATTTGTTCAACGATCCTATGCTGAACAAAAAACTCCGACCGGATCAAATCCGTCTTCTGAAGTGGTACAGTAACATCTTGAACAGTGGAAAGACACGCGGGATCATCAAAAAATGGGAACGCAAAAGTGTGGATTCGAAGGGCATGTCACTACAAGATCTTCTTGAAAAATTCTACTTGGATGGCGGATATTGGCCGAAACGAATAGAGAAAATTTTGGAGAAAGAAATGAAGCCAGAAAAACTTCGCGAGGAACTGGTGAAAGAGATCAGCAATGACAGCGATGCTTTTTTCGTCGACTTGTCAAAACAAGATCTCATCAAAGACTCAACTCCCGTCATACCCACAATGGATATGACACGCTCGAAAGAGGACTTTCTGGCGGTTCAGGTCCAAAGCGGACTGCGGTACTCAACAAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCYAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTTCTCATTGATTTCACGCCAAATACACTATGTGCCCAGTTGTATTCTCTCATATTTCTTCAATCACAGCTCAATAACTCTATGTACAGGTAAAAAGTTTTTTTGTAATTTTGAAAATGAATGAAAAATAGCCGTTAGTTTACAGGCCAACCTTCCAAATTACTCTTCCGAATCATCCCAATCTCGCTCGCTCATCACCATGATAGTCTTCTTCCAGGTCTTCGTATAATTCAGTTCAACCTCTCGATTTTCACTTATAAAATTACTTCCATCTTCAAGCAGCTCTTTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTCATCAAAGACTCAACTCC</pcr_primer_p1>
		<pcr_primer_p2>GGTGATGATCAGAATCAGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTCATCAAAGACTCAACTCCCGTCATACCCACAATGGATATGACACGCTCGAAAGAGGACTTTCTGGCGGTTCAGGTCCAAAGCGGACTGCGGTACTCAACAAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACC</canonical_amplicon>
		<polymorphic_amplicon>ATCTCATCAAAGACTCAACTCCCGTCATACCCACAATGGATATGACACGCTCGAAAGAGGACTTTCTGGCGGTTCAGGTCCAAAGCGGACTGCGGTACTCAACAAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCYAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38679</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>947215</contig_pos>
        <strand>+</strand>
        <context>AGAAAGAAGC[G/T]MTCCCATCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGC</left_flank>
        <right_flank>ATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGTCTCACTTCTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTATTTGTTCAACGATCCTATGCTGAACAAAAAACTCCGACCGGATCAAATCCGTCTTCTGAAGTGGTACAGTAACATCTTGAACAGTGGAAAGACACGCGGGATCATCAAAAAATGGGAACGCAAAAGTGTGGATTCGAAGGGCATGTCACTACAAGATCTTCTTGAAAAATTCTACTTGGATGGCGGATATTGGCCGAAACGAATAGAGAAAATTTTGGAGAAAGAAATGAAGCCAGAAAAACTTCGCGAGGAACTGGTGAAAGAGATCAGCAATGACAGCGATGCTTTTTTCGTCGACTTGTCAAAACAAGATCTCATCAAAGACTCAACTCCCGTCATACCCACAATGGATATGACACGCTCGAAAGAGGACTTTCTGGCGGTTCAGGTCCAAAGCGGACTGCGGTACTCAACAAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTTCTCATTGATTTCACGCCAAATACACTATGTGCCCAGTTGTATTCTCTCATATTTCTTCAATCACAGCTCAATAACTCTATGTACAGGTAAAAAGTTTTTTTGTAATTTTGAAAATGAATGAAAAATAGCCGTTAGTTTACAGGCCAACCTTCCAAATTACTCTTCCGAATCATCCCAATCTCGCTCGCTCATCACCATGATAGTCTTCTTCCAGGTCTTCGTATAATTCAGTTCAACCTCTCGATTTTCACTTATAAAATTACTTCCATCTTCAAGCAGCTCTTTTTTGCTCACTACTTCACGTCACCAAATCATCCAAATCACGCTCATGTA</canonical>
            <polymorphic>ACTATTTGTTCAACGATCCTATGCTGAACAAAAAACTCCGACCGGATCAAATCCGTCTTCTGAAGTGGTACAGTAACATCTTGAACAGTGGAAAGACACGCGGGATCATCAAAAAATGGGAACGCAAAAGTGTGGATTCGAAGGGCATGTCACTACAAGATCTTCTTGAAAAATTCTACTTGGATGGCGGATATTGGCCGAAACGAATAGAGAAAATTTTGGAGAAAGAAATGAAGCCAGAAAAACTTCGCGAGGAACTGGTGAAAGAGATCAGCAATGACAGCGATGCTTTTTTCGTCGACTTGTCAAAACAAGATCTCATCAAAGACTCAACTCCCGTCATACCCACAATGGATATGACACGCTCGAAAGAGGACTTTCTGGCGGTTCAGGTCCAAAGCGGACTGCGGTACTCAACAAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCKATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTTCTCATTGATTTCACGCCAAATACACTATGTGCCCAGTTGTATTCTCTCATATTTCTTCAATCACAGCTCAATAACTCTATGTACAGGTAAAAAGTTTTTTTGTAATTTTGAAAATGAATGAAAAATAGCCGTTAGTTTACAGGCCAACCTTCCAAATTACTCTTCCGAATCATCCCAATCTCGCTCGCTCATCACCATGATAGTCTTCTTCCAGGTCTTCGTATAATTCAGTTCAACCTCTCGATTTTCACTTATAAAATTACTTCCATCTTCAAGCAGCTCTTTTTTGCTCACTACTTCACGTCACCAAATCATCCAAATCACGCTCATGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>360 185 110 85 59 56 55 46 30 14</canonical_bands>
                <polymorphic_bands>360 241 110 85 59 55 46 30 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCGTCTTCTCTGGTATTCA</pcr_primer_p1>
		<pcr_primer_p2>GAAGCAGAAATTGAAGAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTTC</canonical_amplicon>
		<polymorphic_amplicon>AAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCKATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38680</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>947216</contig_pos>
        <strand>+</strand>
        <context>GAAAGAAGCK[A/C]TCCCATCTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCG</left_flank>
        <right_flank>TCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGTCTCACTTCTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTATTTGTTCAACGATCCTATGCTGAACAAAAAACTCCGACCGGATCAAATCCGTCTTCTGAAGTGGTACAGTAACATCTTGAACAGTGGAAAGACACGCGGGATCATCAAAAAATGGGAACGCAAAAGTGTGGATTCGAAGGGCATGTCACTACAAGATCTTCTTGAAAAATTCTACTTGGATGGCGGATATTGGCCGAAACGAATAGAGAAAATTTTGGAGAAAGAAATGAAGCCAGAAAAACTTCGCGAGGAACTGGTGAAAGAGATCAGCAATGACAGCGATGCTTTTTTCGTCGACTTGTCAAAACAAGATCTCATCAAAGACTCAACTCCCGTCATACCCACAATGGATATGACACGCTCGAAAGAGGACTTTCTGGCGGTTCAGGTCCAAAGCGGACTGCGGTACTCAACAAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTTCTCATTGATTTCACGCCAAATACACTATGTGCCCAGTTGTATTCTCTCATATTTCTTCAATCACAGCTCAATAACTCTATGTACAGGTAAAAAGTTTTTTTGTAATTTTGAAAATGAATGAAAAATAGCCGTTAGTTTACAGGCCAACCTTCCAAATTACTCTTCCGAATCATCCCAATCTCGCTCGCTCATCACCATGATAGTCTTCTTCCAGGTCTTCGTATAATTCAGTTCAACCTCTCGATTTTCACTTATAAAATTACTTCCATCTTCAAGCAGCTCTTTTTTGCTCACTACTTCACGTCACCAAATCATCCAAATCACGCTCATGTAT</canonical>
            <polymorphic>CTATTTGTTCAACGATCCTATGCTGAACAAAAAACTCCGACCGGATCAAATCCGTCTTCTGAAGTGGTACAGTAACATCTTGAACAGTGGAAAGACACGCGGGATCATCAAAAAATGGGAACGCAAAAGTGTGGATTCGAAGGGCATGTCACTACAAGATCTTCTTGAAAAATTCTACTTGGATGGCGGATATTGGCCGAAACGAATAGAGAAAATTTTGGAGAAAGAAATGAAGCCAGAAAAACTTCGCGAGGAACTGGTGAAAGAGATCAGCAATGACAGCGATGCTTTTTTCGTCGACTTGTCAAAACAAGATCTCATCAAAGACTCAACTCCCGTCATACCCACAATGGATATGACACGCTCGAAAGAGGACTTTCTGGCGGTTCAGGTCCAAAGCGGACTGCGGTACTCAACAAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGMTCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTTCTCATTGATTTCACGCCAAATACACTATGTGCCCAGTTGTATTCTCTCATATTTCTTCAATCACAGCTCAATAACTCTATGTACAGGTAAAAAGTTTTTTTGTAATTTTGAAAATGAATGAAAAATAGCCGTTAGTTTACAGGCCAACCTTCCAAATTACTCTTCCGAATCATCCCAATCTCGCTCGCTCATCACCATGATAGTCTTCTTCCAGGTCTTCGTATAATTCAGTTCAACCTCTCGATTTTCACTTATAAAATTACTTCCATCTTCAAGCAGCTCTTTTTTGCTCACTACTTCACGTCACCAAATCATCCAAATCACGCTCATGTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>361 185 110 85 59 56 55 46 30 13</canonical_bands>
                <polymorphic_bands>361 241 110 85 59 55 46 30 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATCGTCTTCTCTGGTATTCA</pcr_primer_p1>
		<pcr_primer_p2>GAAGCAGAAATTGAAGAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTTC</canonical_amplicon>
		<polymorphic_amplicon>AAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGMTCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38681</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>947235</contig_pos>
        <strand>+</strand>
        <context>TCATCATAAT[C/T]ATCTTCGTYT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAAT</left_flank>
        <right_flank>ATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACCGTCTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCTGAACAAAAAACTCCGACCGGATCAAATCCGTCTTCTGAAGTGGTACAGTAACATCTTGAACAGTGGAAAGACACGCGGGATCATCAAAAAATGGGAACGCAAAAGTGTGGATTCGAAGGGCATGTCACTACAAGATCTTCTTGAAAAATTCTACTTGGATGGCGGATATTGGCCGAAACGAATAGAGAAAATTTTGGAGAAAGAAATGAAGCCAGAAAAACTTCGCGAGGAACTGGTGAAAGAGATCAGCAATGACAGCGATGCTTTTTTCGTCGACTTGTCAAAACAAGATCTCATCAAAGACTCAACTCCCGTCATACCCACAATGGATATGACACGCTCGAAAGAGGACTTTCTGGCGGTTCAGGTCCAAAGCGGACTGCGGTACTCAACAAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTTCTCATTGATTTCACGCCAAATACACTATGTGCCCAGTTGTATTCTCTCATATTTCTTCAATCACAGCTCAATAACTCTATGTACAGGTAAAAAGTTTTTTTGTAATTTTGAAAATGAATGAAAAATAGCCGTTAGTTTACAGGCCAACCTTCCAAATTACTCTTCCGAATCATCCCAATCTCGCTCGCTCATCACCATGATAGTCTTCTTCCAGGTCTTCGTATAATTCAGTTCAACCTCTCGATTTTCACTTATAAAATTACTTCCATCTTCAAGCAGCTCTTTTTTGCTCACTACTTCACGTCACCAAATCATCCAAATCACGCTCATGTATTATCATGATTGTCTTCTTC</canonical>
            <polymorphic>ATGCTGAACAAAAAACTCCGACCGGATCAAATCCGTCTTCTGAAGTGGTACAGTAACATCTTGAACAGTGGAAAGACACGCGGGATCATCAAAAAATGGGAACGCAAAAGTGTGGATTCGAAGGGCATGTCACTACAAGATCTTCTTGAAAAATTCTACTTGGATGGCGGATATTGGCCGAAACGAATAGAGAAAATTTTGGAGAAAGAAATGAAGCCAGAAAAACTTCGCGAGGAACTGGTGAAAGAGATCAGCAATGACAGCGATGCTTTTTTCGTCGACTTGTCAAAACAAGATCTCATCAAAGACTCAACTCCCGTCATACCCACAATGGATATGACACGCTCGAAAGAGGACTTTCTGGCGGTTCAGGTCCAAAGCGGACTGCGGTACTCAACAAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATYATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTTCTCATTGATTTCACGCCAAATACACTATGTGCCCAGTTGTATTCTCTCATATTTCTTCAATCACAGCTCAATAACTCTATGTACAGGTAAAAAGTTTTTTTGTAATTTTGAAAATGAATGAAAAATAGCCGTTAGTTTACAGGCCAACCTTCCAAATTACTCTTCCGAATCATCCCAATCTCGCTCGCTCATCACCATGATAGTCTTCTTCCAGGTCTTCGTATAATTCAGTTCAACCTCTCGATTTTCACTTATAAAATTACTTCCATCTTCAAGCAGCTCTTTTTTGCTCACTACTTCACGTCACCAAATCATCCAAATCACGCTCATGTATTATCATGATTGTCTTCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCGTCTTCTCTGGTATTCA</pcr_primer_p1>
		<pcr_primer_p2>GAAGCAGAAATTGAAGAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTTC</canonical_amplicon>
		<polymorphic_amplicon>AAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATYATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38682</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>947244</contig_pos>
        <strand>+</strand>
        <context>TYATCTTCGT[C/T]TTTTTCATYG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGT</left_flank>
        <right_flank>TTTTTCATCGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAACTCCGACCGGATCAAATCCGTCTTCTGAAGTGGTACAGTAACATCTTGAACAGTGGAAAGACACGCGGGATCATCAAAAAATGGGAACGCAAAAGTGTGGATTCGAAGGGCATGTCACTACAAGATCTTCTTGAAAAATTCTACTTGGATGGCGGATATTGGCCGAAACGAATAGAGAAAATTTTGGAGAAAGAAATGAAGCCAGAAAAACTTCGCGAGGAACTGGTGAAAGAGATCAGCAATGACAGCGATGCTTTTTTCGTCGACTTGTCAAAACAAGATCTCATCAAAGACTCAACTCCCGTCATACCCACAATGGATATGACACGCTCGAAAGAGGACTTTCTGGCGGTTCAGGTCCAAAGCGGACTGCGGTACTCAACAAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTTCTCATTGATTTCACGCCAAATACACTATGTGCCCAGTTGTATTCTCTCATATTTCTTCAATCACAGCTCAATAACTCTATGTACAGGTAAAAAGTTTTTTTGTAATTTTGAAAATGAATGAAAAATAGCCGTTAGTTTACAGGCCAACCTTCCAAATTACTCTTCCGAATCATCCCAATCTCGCTCGCTCATCACCATGATAGTCTTCTTCCAGGTCTTCGTATAATTCAGTTCAACCTCTCGATTTTCACTTATAAAATTACTTCCATCTTCAAGCAGCTCTTTTTTGCTCACTACTTCACGTCACCAAATCATCCAAATCACGCTCATGTATTATCATGATTGTCTTCTTCTTGGTTTTT</canonical>
            <polymorphic>AAAAAACTCCGACCGGATCAAATCCGTCTTCTGAAGTGGTACAGTAACATCTTGAACAGTGGAAAGACACGCGGGATCATCAAAAAATGGGAACGCAAAAGTGTGGATTCGAAGGGCATGTCACTACAAGATCTTCTTGAAAAATTCTACTTGGATGGCGGATATTGGCCGAAACGAATAGAGAAAATTTTGGAGAAAGAAATGAAGCCAGAAAAACTTCGCGAGGAACTGGTGAAAGAGATCAGCAATGACAGCGATGCTTTTTTCGTCGACTTGTCAAAACAAGATCTCATCAAAGACTCAACTCCCGTCATACCCACAATGGATATGACACGCTCGAAAGAGGACTTTCTGGCGGTTCAGGTCCAAAGCGGACTGCGGTACTCAACAAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTYTTTTTCATCGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTTCTCATTGATTTCACGCCAAATACACTATGTGCCCAGTTGTATTCTCTCATATTTCTTCAATCACAGCTCAATAACTCTATGTACAGGTAAAAAGTTTTTTTGTAATTTTGAAAATGAATGAAAAATAGCCGTTAGTTTACAGGCCAACCTTCCAAATTACTCTTCCGAATCATCCCAATCTCGCTCGCTCATCACCATGATAGTCTTCTTCCAGGTCTTCGTATAATTCAGTTCAACCTCTCGATTTTCACTTATAAAATTACTTCCATCTTCAAGCAGCTCTTTTTTGCTCACTACTTCACGTCACCAAATCATCCAAATCACGCTCATGTATTATCATGATTGTCTTCTTCTTGGTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCGTCTTCTCTGGTATTCA</pcr_primer_p1>
		<pcr_primer_p2>GAAGCAGAAATTGAAGAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTTC</canonical_amplicon>
		<polymorphic_amplicon>AAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTYTTTTTCATCGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38683</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>947253</contig_pos>
        <strand>+</strand>
        <context>TYTTTTTCAT[C/T]GYCTCACTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTCTTTTTCAT</left_flank>
        <right_flank>GTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACCGGATCAAATCCGTCTTCTGAAGTGGTACAGTAACATCTTGAACAGTGGAAAGACACGCGGGATCATCAAAAAATGGGAACGCAAAAGTGTGGATTCGAAGGGCATGTCACTACAAGATCTTCTTGAAAAATTCTACTTGGATGGCGGATATTGGCCGAAACGAATAGAGAAAATTTTGGAGAAAGAAATGAAGCCAGAAAAACTTCGCGAGGAACTGGTGAAAGAGATCAGCAATGACAGCGATGCTTTTTTCGTCGACTTGTCAAAACAAGATCTCATCAAAGACTCAACTCCCGTCATACCCACAATGGATATGACACGCTCGAAAGAGGACTTTCTGGCGGTTCAGGTCCAAAGCGGACTGCGGTACTCAACAAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTTCTCATTGATTTCACGCCAAATACACTATGTGCCCAGTTGTATTCTCTCATATTTCTTCAATCACAGCTCAATAACTCTATGTACAGGTAAAAAGTTTTTTTGTAATTTTGAAAATGAATGAAAAATAGCCGTTAGTTTACAGGCCAACCTTCCAAATTACTCTTCCGAATCATCCCAATCTCGCTCGCTCATCACCATGATAGTCTTCTTCCAGGTCTTCGTATAATTCAGTTCAACCTCTCGATTTTCACTTATAAAATTACTTCCATCTTCAAGCAGCTCTTTTTTGCTCACTACTTCACGTCACCAAATCATCCAAATCACGCTCATGTATTATCATGATTGTCTTCTTCTTGGTTTTTGTGTAATCT</canonical>
            <polymorphic>CGACCGGATCAAATCCGTCTTCTGAAGTGGTACAGTAACATCTTGAACAGTGGAAAGACACGCGGGATCATCAAAAAATGGGAACGCAAAAGTGTGGATTCGAAGGGCATGTCACTACAAGATCTTCTTGAAAAATTCTACTTGGATGGCGGATATTGGCCGAAACGAATAGAGAAAATTTTGGAGAAAGAAATGAAGCCAGAAAAACTTCGCGAGGAACTGGTGAAAGAGATCAGCAATGACAGCGATGCTTTTTTCGTCGACTTGTCAAAACAAGATCTCATCAAAGACTCAACTCCCGTCATACCCACAATGGATATGACACGCTCGAAAGAGGACTTTCTGGCGGTTCAGGTCCAAAGCGGACTGCGGTACTCAACAAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATYGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTTCTCATTGATTTCACGCCAAATACACTATGTGCCCAGTTGTATTCTCTCATATTTCTTCAATCACAGCTCAATAACTCTATGTACAGGTAAAAAGTTTTTTTGTAATTTTGAAAATGAATGAAAAATAGCCGTTAGTTTACAGGCCAACCTTCCAAATTACTCTTCCGAATCATCCCAATCTCGCTCGCTCATCACCATGATAGTCTTCTTCCAGGTCTTCGTATAATTCAGTTCAACCTCTCGATTTTCACTTATAAAATTACTTCCATCTTCAAGCAGCTCTTTTTTGCTCACTACTTCACGTCACCAAATCATCCAAATCACGCTCATGTATTATCATGATTGTCTTCTTCTTGGTTTTTGTGTAATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCGTCTTCTCTGGTATTCA</pcr_primer_p1>
		<pcr_primer_p2>GAAGCAGAAATTGAAGAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTTC</canonical_amplicon>
		<polymorphic_amplicon>AAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATYGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38684</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>947255</contig_pos>
        <strand>+</strand>
        <context>TTTTTCATYG[C/T]CTCACTTCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCG</left_flank>
        <right_flank>CTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCGGATCAAATCCGTCTTCTGAAGTGGTACAGTAACATCTTGAACAGTGGAAAGACACGCGGGATCATCAAAAAATGGGAACGCAAAAGTGTGGATTCGAAGGGCATGTCACTACAAGATCTTCTTGAAAAATTCTACTTGGATGGCGGATATTGGCCGAAACGAATAGAGAAAATTTTGGAGAAAGAAATGAAGCCAGAAAAACTTCGCGAGGAACTGGTGAAAGAGATCAGCAATGACAGCGATGCTTTTTTCGTCGACTTGTCAAAACAAGATCTCATCAAAGACTCAACTCCCGTCATACCCACAATGGATATGACACGCTCGAAAGAGGACTTTCTGGCGGTTCAGGTCCAAAGCGGACTGCGGTACTCAACAAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTTCTCATTGATTTCACGCCAAATACACTATGTGCCCAGTTGTATTCTCTCATATTTCTTCAATCACAGCTCAATAACTCTATGTACAGGTAAAAAGTTTTTTTGTAATTTTGAAAATGAATGAAAAATAGCCGTTAGTTTACAGGCCAACCTTCCAAATTACTCTTCCGAATCATCCCAATCTCGCTCGCTCATCACCATGATAGTCTTCTTCCAGGTCTTCGTATAATTCAGTTCAACCTCTCGATTTTCACTTATAAAATTACTTCCATCTTCAAGCAGCTCTTTTTTGCTCACTACTTCACGTCACCAAATCATCCAAATCACGCTCATGTATTATCATGATTGTCTTCTTCTTGGTTTTTGTGTAATCTAG</canonical>
            <polymorphic>ACCGGATCAAATCCGTCTTCTGAAGTGGTACAGTAACATCTTGAACAGTGGAAAGACACGCGGGATCATCAAAAAATGGGAACGCAAAAGTGTGGATTCGAAGGGCATGTCACTACAAGATCTTCTTGAAAAATTCTACTTGGATGGCGGATATTGGCCGAAACGAATAGAGAAAATTTTGGAGAAAGAAATGAAGCCAGAAAAACTTCGCGAGGAACTGGTGAAAGAGATCAGCAATGACAGCGATGCTTTTTTCGTCGACTTGTCAAAACAAGATCTCATCAAAGACTCAACTCCCGTCATACCCACAATGGATATGACACGCTCGAAAGAGGACTTTCTGGCGGTTCAGGTCCAAAGCGGACTGCGGTACTCAACAAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGYCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTTCTCATTGATTTCACGCCAAATACACTATGTGCCCAGTTGTATTCTCTCATATTTCTTCAATCACAGCTCAATAACTCTATGTACAGGTAAAAAGTTTTTTTGTAATTTTGAAAATGAATGAAAAATAGCCGTTAGTTTACAGGCCAACCTTCCAAATTACTCTTCCGAATCATCCCAATCTCGCTCGCTCATCACCATGATAGTCTTCTTCCAGGTCTTCGTATAATTCAGTTCAACCTCTCGATTTTCACTTATAAAATTACTTCCATCTTCAAGCAGCTCTTTTTTGCTCACTACTTCACGTCACCAAATCATCCAAATCACGCTCATGTATTATCATGATTGTCTTCTTCTTGGTTTTTGTGTAATCTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCGTCTTCTCTGGTATTCA</pcr_primer_p1>
		<pcr_primer_p2>GAAGCAGAAATTGAAGAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGTCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTTC</canonical_amplicon>
		<polymorphic_amplicon>AAATCGTCTTCTCTGGTATTCAACAGCAAGGACCATCTAGCTTTTGATGAAAGGATTTGAACAAAAGGAGAAGAAAGAAGCGATCCCATCTTCATCATAATCATCTTCGTCTTTTTCATCGYCTCACTTCTGATTCTGATCATCACCGTCTACCGAACGTCAACTATTTCCACTAAGGTAATTCTGAAAATAGTATAAATAGTTCAAAAACTAAATATCACAGATCTTCTTCTTCTTCAATTTCTGCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38685</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>950368</contig_pos>
        <strand>+</strand>
        <context>TCATTATTAG[C/G]TTTTTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTGAAAGATAGTTTATTTTGAAAGGTAGAATGTTAATTTTCATTATTAG</left_flank>
        <right_flank>TTTTTTTTTGAAAAGGGTAAAGAAGTTCAGCCATCATAGGGCCACCAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCCAAAGTTGAATCGGCAGCTGAAACAACACCTACATATTTCGATTCATTTCTTGCAGAGTAACCACTAATGCCAGTAACATCTCGTCCAGCAACCAAAGCATCACACCAAACAGCCATAGTTTAGCAGAAAATCAACCACCACCCAGCATTGGTAAGTTTAAAATTTCAATCAAACTTAGTATAAAGTTGTTCATAACTTAATGCAGCAGGTTTCCAGTAGGCCACAGAATCGAAATTCTAGTCAGAGACAACAAAATTTTTTGAAACTAAAGTTTTTTTGAATTTTCTACTATTTGTTTTGTATACATCGAATTAATTGGCCCACAAGACTTTTTACAGTCTTCCGTCAAGTTTTACCAAGTTTTTTGTTGTTGGAAAATGTGGTTCTTAACTATATAGGTCATGTCCCTTTGATTGATCAAATAGCTCACGACAAAATTATCATATTGAAAGATAGTTTATTTTGAAAGGTAGAATGTTAATTTTCATTATTAGTTTTTTTTTTGAAAAGGGTAAAGAAGTTCAGCCATCATAGGGCCACCAATAAATAAAGAAAGACATAACAATTCTGATCGTTACATCAGAACATTTTGATGGTTTTTAAAATTTTAGTTGAGCGTGAAATGACAACTATTACGTTGAAATTAAAAATTTAAATTCTCAGAAATAGTAAGAAAACTCACCGAAAAAATTTACAGATGTATCAGGAGACCACATTTCGGATGATCGTCGCTTGGAGAACTCTAAAACTTTTGTGAATACAACATCAAAAGGGAAGATTAGACGAGTTCATCAAAAAAGGAATGTACATCCAAGCGGAGAATCAAGAATCGAAACCAAAGATGGAGCACCACCAATTTCAAAAAGGGCAGCAGAAGCCCCCGGACCGTCGGCAATTTCTCTCCAACCGCTCGATTTCTTCACAAACTCCTCACATGCAAGCTCATTGTATTCCATTCCAATACTGCATTTCGTGTTCCCGGAGCATCGGCCTTT</canonical>
            <polymorphic>ACTCCAAAGTTGAATCGGCAGCTGAAACAACACCTACATATTTCGATTCATTTCTTGCAGAGTAACCACTAATGCCAGTAACATCTCGTCCAGCAACCAAAGCATCACACCAAACAGCCATAGTTTAGCAGAAAATCAACCACCACCCAGCATTGGTAAGTTTAAAATTTCAATCAAACTTAGTATAAAGTTGTTCATAACTTAATGCAGCAGGTTTCCAGTAGGCCACAGAATCGAAATTCTAGTCAGAGACAACAAAATTTTTTGAAACTAAAGTTTTTTTGAATTTTCTACTATTTGTTTTGTATACATCGAATTAATTGGCCCACAAGACTTTTTACAGTCTTCCGTCAAGTTTTACCAAGTTTTTTGTTGTTGGAAAATGTGGTTCTTAACTATATAGGTCATGTCCCTTTGATTGATCAAATAGCTCACGACAAAATTATCATATTGAAAGATAGTTTATTTTGAAAGGTAGAATGTTAATTTTCATTATTAGSTTTTTTTTTGAAAAGGGTAAAGAAGTTCAGCCATCATAGGGCCACCAATAAATAAAGAAAGACATAACAATTCTGATCGTTACATCAGAACATTTTGATGGTTTTTAAAATTTTAGTTGAGCGTGAAATGACAACTATTACGTTGAAATTAAAAATTTAAATTCTCAGAAATAGTAAGAAAACTCACCGAAAAAATTTACAGATGTATCAGGAGACCACATTTCGGATGATCGTCGCTTGGAGAACTCTAAAACTTTTGTGAATACAACATCAAAAGGGAAGATTAGACGAGTTCATCAAAAAAGGAATGTACATCCAAGCGGAGAATCAAGAATCGAAACCAAAGATGGAGCACCACCAATTTCAAAAAGGGCAGCAGAAGCCCCCGGACCGTCGGCAATTTCTCTCCAACCGCTCGATTTCTTCACAAACTCCTCACATGCAAGCTCATTGTATTCCATTCCAATACTGCATTTCGTGTTCCCGGAGCATCGGCCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTTTAGCAGAAAATCAACCAC</pcr_primer_p1>
		<pcr_primer_p2>TTTATTTATTGGTGGCCCTAT</pcr_primer_p2>
		<pcr_amplicon_size>436</pcr_amplicon_size>
		<canonical_amplicon>TAGTTTAGCAGAAAATCAACCACCACCCAGCATTGGTAAGTTTAAAATTTCAATCAAACTTAGTATAAAGTTGTTCATAACTTAATGCAGCAGGTTTCCAGTAGGCCACAGAATCGAAATTCTAGTCAGAGACAACAAAATTTTTTGAAACTAAAGTTTTTTTGAATTTTCTACTATTTGTTTTGTATACATCGAATTAATTGGCCCACAAGACTTTTTACAGTCTTCCGTCAAGTTTTACCAAGTTTTTTGTTGTTGGAAAATGTGGTTCTTAACTATATAGGTCATGTCCCTTTGATTGATCAAATAGCTCACGACAAAATTATCATATTGAAAGATAGTTTATTTTGAAAGGTAGAATGTTAATTTTCATTATTAGTTTTTTTTTTGAAAAGGGTAAAGAAGTTCAGCCATCATAGGGCCACCAATAAATAAA</canonical_amplicon>
		<polymorphic_amplicon>TAGTTTAGCAGAAAATCAACCACCACCCAGCATTGGTAAGTTTAAAATTTCAATCAAACTTAGTATAAAGTTGTTCATAACTTAATGCAGCAGGTTTCCAGTAGGCCACAGAATCGAAATTCTAGTCAGAGACAACAAAATTTTTTGAAACTAAAGTTTTTTTGAATTTTCTACTATTTGTTTTGTATACATCGAATTAATTGGCCCACAAGACTTTTTACAGTCTTCCGTCAAGTTTTACCAAGTTTTTTGTTGTTGGAAAATGTGGTTCTTAACTATATAGGTCATGTCCCTTTGATTGATCAAATAGCTCACGACAAAATTATCATATTGAAAGATAGTTTATTTTGAAAGGTAGAATGTTAATTTTCATTATTAGSTTTTTTTTTGAAAAGGGTAAAGAAGTTCAGCCATCATAGGGCCACCAATAAATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38686</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>950403</contig_pos>
        <strand></strand>
        <context>GTTCAGCCAT[C/G]ATAGGGCCAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATTTTCATTATTAGTTTTTTTTTTGAAAAGGGTAAAGAAGTTCAGCCAT</left_flank>
        <right_flank>ATAGGGCCACCAATAAATAAAGAAAGACATAACAATTCTGATCGTTACAT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATATTTCGATTCATTTCTTGCAGAGTAACCACTAATGCCAGTAACATCTCGTCCAGCAACCAAAGCATCACACCAAACAGCCATAGTTTAGCAGAAAATCAACCACCACCCAGCATTGGTAAGTTTAAAATTTCAATCAAACTTAGTATAAAGTTGTTCATAACTTAATGCAGCAGGTTTCCAGTAGGCCACAGAATCGAAATTCTAGTCAGAGACAACAAAATTTTTTGAAACTAAAGTTTTTTTGAATTTTCTACTATTTGTTTTGTATACATCGAATTAATTGGCCCACAAGACTTTTTACAGTCTTCCGTCAAGTTTTACCAAGTTTTTTGTTGTTGGAAAATGTGGTTCTTAACTATATAGGTCATGTCCCTTTGATTGATCAAATAGCTCACGACAAAATTATCATATTGAAAGATAGTTTATTTTGAAAGGTAGAATGTTAATTTTCATTATTAGTTTTTTTTTTGAAAAGGGTAAAGAAGTTCAGCCATCATAGGGCCACCAATAAATAAAGAAAGACATAACAATTCTGATCGTTACATCAGAACATTTTGATGGTTTTTAAAATTTTAGTTGAGCGTGAAATGACAACTATTACGTTGAAATTAAAAATTTAAATTCTCAGAAATAGTAAGAAAACTCACCGAAAAAATTTACAGATGTATCAGGAGACCACATTTCGGATGATCGTCGCTTGGAGAACTCTAAAACTTTTGTGAATACAACATCAAAAGGGAAGATTAGACGAGTTCATCAAAAAAGGAATGTACATCCAAGCGGAGAATCAAGAATCGAAACCAAAGATGGAGCACCACCAATTTCAAAAAGGGCAGCAGAAGCCCCCGGACCGTCGGCAATTTCTCTCCAACCGCTCGATTTCTTCACAAACTCCTCACATGCAAGCTCATTGTATTCCATTCCAATACTGCATTTCGTGTTCCCGGAGCATCGGCCTTTGATTACTCGTCTCCAAATCAATGGCAAACATCTTC</canonical>
            <polymorphic>ACATATTTCGATTCATTTCTTGCAGAGTAACCACTAATGCCAGTAACATCTCGTCCAGCAACCAAAGCATCACACCAAACAGCCATAGTTTAGCAGAAAATCAACCACCACCCAGCATTGGTAAGTTTAAAATTTCAATCAAACTTAGTATAAAGTTGTTCATAACTTAATGCAGCAGGTTTCCAGTAGGCCACAGAATCGAAATTCTAGTCAGAGACAACAAAATTTTTTGAAACTAAAGTTTTTTTGAATTTTCTACTATTTGTTTTGTATACATCGAATTAATTGGCCCACAAGACTTTTTACAGTCTTCCGTCAAGTTTTACCAAGTTTTTTGTTGTTGGAAAATGTGGTTCTTAACTATATAGGTCATGTCCCTTTGATTGATCAAATAGCTCACGACAAAATTATCATATTGAAAGATAGTTTATTTTGAAAGGTAGAATGTTAATTTTCATTATTAGTTTTTTTTTTGAAAAGGGTAAAGAAGTTCAGCCATSATAGGGCCACCAATAAATAAAGAAAGACATAACAATTCTGATCGTTACATCAGAACATTTTGATGGTTTTTAAAATTTTAGTTGAGCGTGAAATGACAACTATTACGTTGAAATTAAAAATTTAAATTCTCAGAAATAGTAAGAAAACTCACCGAAAAAATTTACAGATGTATCAGGAGACCACATTTCGGATGATCGTCGCTTGGAGAACTCTAAAACTTTTGTGAATACAACATCAAAAGGGAAGATTAGACGAGTTCATCAAAAAAGGAATGTACATCCAAGCGGAGAATCAAGAATCGAAACCAAAGATGGAGCACCACCAATTTCAAAAAGGGCAGCAGAAGCCCCCGGACCGTCGGCAATTTCTCTCCAACCGCTCGATTTCTTCACAAACTCCTCACATGCAAGCTCATTGTATTCCATTCCAATACTGCATTTCGTGTTCCCGGAGCATCGGCCTTTGATTACTCGTCTCCAAATCAATGGCAAACATCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAGATAGTTTATTTTGAAAGGT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCGGTGAGTTTTCTTACTA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>TGAAAGATAGTTTATTTTGAAAGGTAGAATGTTAATTTTCATTATTAGTTTTTTTTTTGAAAAGGGTAAAGAAGTTCAGCCATCATAGGGCCACCAATAAATAAAGAAAGACATAACAATTCTGATCGTTACATCAGAACATTTTGATGGTTTTTAAAATTTTAGTTGAGCGTGAAATGACAACTATTACGTTGAAATTAAAAATTTAAATTCTCAGAAATAGTAAGAAAACTCACCGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>TGAAAGATAGTTTATTTTGAAAGGTAGAATGTTAATTTTCATTATTAGTTTTTTTTTTGAAAAGGGTAAAGAAGTTCAGCCATSATAGGGCCACCAATAAATAAAGAAAGACATAACAATTCTGATCGTTACATCAGAACATTTTGATGGTTTTTAAAATTTTAGTTGAGCGTGAAATGACAACTATTACGTTGAAATTAAAAATTTAAATTCTCAGAAATAGTAAGAAAACTCACCGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38687</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>974331</contig_pos>
        <strand></strand>
        <context>TACAGTAATC[C/A]TGAGATTCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ACAATCGAAAAACGTTCAAATTGAAATGGACGAACTTGAATACAGTAATC</left_flank>
        <right_flank>TGAGATTCAAAGTGACAAATGTGATCCCTAGACAAGCCGAGATGCAAAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTTATGAACCTCAACACACGGTAACTTGGGTACAGCGGATGTCACACTATTGTTGTCATTGAATCTTTGATTCAGATGTTTGGGAATGTAACCAATTTACAATTTCATGTTAACATGTAATGTGAGGCAAAGTTTGAGAGTCTGGCTAAAAATTCTAATGAACCATTGATTTCACCAAAATGCTGAAATTGTGGGCAAGTTGCCGTGACCATCCGGTCTCTAGGAAATAAACTCATAAAGCAGCTAGGCTGCTAAATTTTACCTAGTATGGAACTACCCTAACCTAAAAGCAGTGGCCCCGTTCCCACAGCCTTGTCAAAAAGTTGAAAATTATCAATTACCTTTGAAAAGGACAATTTACATTAATTTAAAACTTCATAACAGGACCTCAAAACATATGACGCGACACGTGATACCATAATTCTAAGTATCAAAAAGTCTGTACACAACAATCGAAAAACGTTCAAATTGAAATGGACGAACTTGAATACAGTAATCCTGAGATTCAAAGTGACAAATGTGATCCCTAGACAAGCCGAGATGCAAAAATTCTACAGTACCCCGGCGCATACGTTCCTTAAAATGTTTTACATTTAAAAAAGCAGATCTCCTACGACAAAAACTGCATCTATCAGTTCCGACACCGTATCTATTTCCAATTAAAAAAAACCATGTCCAATCCTAAAACGATTTCCATTGACACTCAACAGCATTTTCGTTCCAAAAATAAACTGGAAAAAGGCGATGAAATGATCGATGACAGTATTGCTTCCTCGTCCTATTTCCCCCGCACTCATCACCAGGTTCGCTATTTTACAGTTCTGGCAAACCAATCTGTCATTATTTTTTGTATTTCCCGCTCGAAAGATTCTTTTTTATCTTTTTCTTGAATCAAACAGAATGAAAAAGAAGATTGAAAGACGACTGCGTCAGGTATCCAAAAAAAAACAGTTCAAAAATGAATTATTCAGATACGGTATCTTCTTCGGTCAGAGGTTT</canonical>
            <polymorphic>CGTTATGAACCTCAACACACGGTAACTTGGGTACAGCGGATGTCACACTATTGTTGTCATTGAATCTTTGATTCAGATGTTTGGGAATGTAACCAATTTACAATTTCATGTTAACATGTAATGTGAGGCAAAGTTTGAGAGTCTGGCTAAAAATTCTAATGAACCATTGATTTCACCAAAATGCTGAAATTGTGGGCAAGTTGCCGTGACCATCCGGTCTCTAGGAAATAAACTCATAAAGCAGCTAGGCTGCTAAATTTTACCTAGTATGGAACTACCCTAACCTAAAAGCAGTGGCCCCGTTCCCACAGCCTTGTCAAAAAGTTGAAAATTATCAATTACCTTTGAAAAGGACAATTTACATTAATTTAAAACTTCATAACAGGACCTCAAAACATATGACGCGACACGTGATACCATAATTCTAAGTATCAAAAAGTCTGTACACAACAATCGAAAAACGTTCAAATTGAAATGGACGAACTTGAATACAGTAATCMTGAGATTCAAAGTGACAAATGTGATCCCTAGACAAGCCGAGATGCAAAAATTCTACAGTACCCCGGCGCATACGTTCCTTAAAATGTTTTACATTTAAAAAAGCAGATCTCCTACGACAAAAACTGCATCTATCAGTTCCGACACCGTATCTATTTCCAATTAAAAAAAACCATGTCCAATCCTAAAACGATTTCCATTGACACTCAACAGCATTTTCGTTCCAAAAATAAACTGGAAAAAGGCGATGAAATGATCGATGACAGTATTGCTTCCTCGTCCTATTTCCCCCGCACTCATCACCAGGTTCGCTATTTTACAGTTCTGGCAAACCAATCTGTCATTATTTTTTGTATTTCCCGCTCGAAAGATTCTTTTTTATCTTTTTCTTGAATCAAACAGAATGAAAAAGAAGATTGAAAGACGACTGCGTCAGGTATCCAAAAAAAAACAGTTCAAAAATGAATTATTCAGATACGGTATCTTCTTCGGTCAGAGGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 425 75</canonical_bands>
                <polymorphic_bands>575 425</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTACCTTTGAAAAGGACAATTTA</pcr_primer_p1>
		<pcr_primer_p2>AAACATTTTAAGGAACGTATGC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTACCTTTGAAAAGGACAATTTACATTAATTTAAAACTTCATAACAGGACCTCAAAACATATGACGCGACACGTGATACCATAATTCTAAGTATCAAAAAGTCTGTACACAACAATCGAAAAACGTTCAAATTGAAATGGACGAACTTGAATACAGTAATCCTGAGATTCAAAGTGACAAATGTGATCCCTAGACAAGCCGAGATGCAAAAATTCTACAGTACCCCGGCGCATACGTTCCTTAAAATGTTT</canonical_amplicon>
		<polymorphic_amplicon>TTACCTTTGAAAAGGACAATTTACATTAATTTAAAACTTCATAACAGGACCTCAAAACATATGACGCGACACGTGATACCATAATTCTAAGTATCAAAAAGTCTGTACACAACAATCGAAAAACGTTCAAATTGAAATGGACGAACTTGAATACAGTAATCMTGAGATTCAAAGTGACAAATGTGATCCCTAGACAAGCCGAGATGCAAAAATTCTACAGTACCCCGGCGCATACGTTCCTTAAAATGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38688</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>988278</contig_pos>
        <strand>+</strand>
        <context>CAAACGGCTA[A/G]TGAGGCTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTTTTTTGGATTGGCTGTTCATCTAGTTGAAAATAGTGCAAACGGCTA</left_flank>
        <right_flank>TGAGGCTTTTTTTGCGGCACTGGCGGTAAACAGGGATTTAAAGAGAGATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTCGTTTTTTTCAAGAACTGAAGTACGGAGTTTAAAATAGGGAAGAAATTTGAACTACTTTTTAAGGAGAGTTCTCAATCCAGATCGGATGAAAAACTCAAGTCAGGGAAGCAGAAAATCAGAAAAGGAAATTGAGTTTTCTGAGTCTCATAGAGTTCATTGCTCCAGTTAGACAATGAACTCTGGCACGAACAATAAGAAGATAAATCATGAAAAACCTCAAAAATCGCAGTCTAGCATCATTGAATCAGGTATTTAAAATAACTTTTTTATCAATCACGCTTTTCAAAATACGCAATCTCTTCAGAAATCTATTTGAAGTAGAAAAGAAGAGCCTATATTGACTCACTTTCAAGTTTTTTTCTCTTTTTCCATTTACTAAGCTAACTAAGCTAACTAAACTGAGAAATACTGAATCACTATTTTTTTCAAAGTCTTTTTCTTCTCTATTTTTTTGGATTGGCTGTTCATCTAGTTGAAAATAGTGCAAACGGCTAGTGAGGCTTTTTTTGCGGCACTGGCGGTAAACAGGGATTTAAAGAGAGATAAGAAAAAGAAAACCCGGAAAAGTTTGTGAAAAATGGAAAGCAAAACAAAACGAGTGCTTCCTGAAATTCATCAACTTCTTTTTTTTGACAACTCGAAGGATCATTTATTAGTTGTGTTCCTCCCCAGTGAGTCTAACACTTTGTAACCATCTGAATATACTTGTGGTTGGAGAAGATATGCTATAAAGAAACAAAAAAGAGAATTCTTCGAAAAAACCCATTGCTCCTCCGGGATTATTAGTATTTTTCTACACGTTGTGGTTCGTAGCAAAGTGTAACGTTGCTCGTAAAATTTATTGCAGGAATTGGTGGGATAAAAGGTCACAAGTTTTGCACTGCTTTCAATATTTCACGTCCTCGCCTAATCTGGATAATTTTTCACAAGTGTAAGGTTGGGGTGCTCAATTAGGCAGAGGTCAGTCTGTTTTGCAGCACACGTTTTTCTTCTTT</canonical>
            <polymorphic>GTTTCGTTTTTTTCAAGAACTGAAGTACGGAGTTTAAAATAGGGAAGAAATTTGAACTACTTTTTAAGGAGAGTTCTCAATCCAGATCGGATGAAAAACTCAAGTCAGGGAAGCAGAAAATCAGAAAAGGAAATTGAGTTTTCTGAGTCTCATAGAGTTCATTGCTCCAGTTAGACAATGAACTCTGGCACGAACAATAAGAAGATAAATCATGAAAAACCTCAAAAATCGCAGTCTAGCATCATTGAATCAGGTATTTAAAATAACTTTTTTATCAATCACGCTTTTCAAAATACGCAATCTCTTCAGAAATCTATTTGAAGTAGAAAAGAAGAGCCTATATTGACTCACTTTCAAGTTTTTTTCTCTTTTTCCATTTACTAAGCTAACTAAGCTAACTAAACTGAGAAATACTGAATCACTATTTTTTTCAAAGTCTTTTTCTTCTCTATTTTTTTGGATTGGCTGTTCATCTAGTTGAAAATAGTGCAAACGGCTARTGAGGCTTTTTTTGCGGCACTGGCGGTAAACAGGGATTTAAAGAGAGATAAGAAAAAGAAAACCCGGAAAAGTTTGTGAAAAATGGAAAGCAAAACAAAACGAGTGCTTCCTGAAATTCATCAACTTCTTTTTTTTGACAACTCGAAGGATCATTTATTAGTTGTGTTCCTCCCCAGTGAGTCTAACACTTTGTAACCATCTGAATATACTTGTGGTTGGAGAAGATATGCTATAAAGAAACAAAAAAGAGAATTCTTCGAAAAAACCCATTGCTCCTCCGGGATTATTAGTATTTTTCTACACGTTGTGGTTCGTAGCAAAGTGTAACGTTGCTCGTAAAATTTATTGCAGGAATTGGTGGGATAAAAGGTCACAAGTTTTGCACTGCTTTCAATATTTCACGTCCTCGCCTAATCTGGATAATTTTTCACAAGTGTAAGGTTGGGGTGCTCAATTAGGCAGAGGTCAGTCTGTTTTGCAGCACACGTTTTTCTTCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 238 236 23</canonical_bands>
                <polymorphic_bands>526 238 236</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>190 91 88 71 69 68 60 59 36 34 29 28 27 17 17 15 14 13 13 13 13 11 9 7 6 2</canonical_bands>
                <polymorphic_bands>190 91 88 71 69 68 60 59 36 34 30 29 28 27 17 15 14 13 13 13 11 9 7 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCAAAGTCTTTTTCTTCTCT</pcr_primer_p1>
		<pcr_primer_p2>GGAGGAACACAACTAATAAATGA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCAAAGTCTTTTTCTTCTCTATTTTTTTGGATTGGCTGTTCATCTAGTTGAAAATAGTGCAAACGGCTAGTGAGGCTTTTTTTGCGGCACTGGCGGTAAACAGGGATTTAAAGAGAGATAAGAAAAAGAAAACCCGGAAAAGTTTGTGAAAAATGGAAAGCAAAACAAAACGAGTGCTTCCTGAAATTCATCAACTTCTTTTTTTTGACAACTCGAAGGATCATTTATTAGTTGTGTTCCTCC</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCAAAGTCTTTTTCTTCTCTATTTTTTTGGATTGGCTGTTCATCTAGTTGAAAATAGTGCAAACGGCTARTGAGGCTTTTTTTGCGGCACTGGCGGTAAACAGGGATTTAAAGAGAGATAAGAAAAAGAAAACCCGGAAAAGTTTGTGAAAAATGGAAAGCAAAACAAAACGAGTGCTTCCTGAAATTCATCAACTTCTTTTTTTTGACAACTCGAAGGATCATTTATTAGTTGTGTTCCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38689</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>988331</contig_pos>
        <strand>+</strand>
        <context>GAGAGATARG[A/G]AAAAGAAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGCTTTTTTTGCGGCACTGGCGGTAAACAGGGATTTAAAGAGAGATAAG</left_flank>
        <right_flank>AAAAGAAAACCCGGAAAAGTTTGTGAAAAATGGAAAGCAAAACAAAACGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACTACTTTTTAAGGAGAGTTCTCAATCCAGATCGGATGAAAAACTCAAGTCAGGGAAGCAGAAAATCAGAAAAGGAAATTGAGTTTTCTGAGTCTCATAGAGTTCATTGCTCCAGTTAGACAATGAACTCTGGCACGAACAATAAGAAGATAAATCATGAAAAACCTCAAAAATCGCAGTCTAGCATCATTGAATCAGGTATTTAAAATAACTTTTTTATCAATCACGCTTTTCAAAATACGCAATCTCTTCAGAAATCTATTTGAAGTAGAAAAGAAGAGCCTATATTGACTCACTTTCAAGTTTTTTTCTCTTTTTCCATTTACTAAGCTAACTAAGCTAACTAAACTGAGAAATACTGAATCACTATTTTTTTCAAAGTCTTTTTCTTCTCTATTTTTTTGGATTGGCTGTTCATCTAGTTGAAAATAGTGCAAACGGCTAGTGAGGCTTTTTTTGCGGCACTGGCGGTAAACAGGGATTTAAAGAGAGATAAGAAAAAGAAAACCCGGAAAAGTTTGTGAAAAATGGAAAGCAAAACAAAACGAGTGCTTCCTGAAATTCATCAACTTCTTTTTTTTGACAACTCGAAGGATCATTTATTAGTTGTGTTCCTCCCCAGTGAGTCTAACACTTTGTAACCATCTGAATATACTTGTGGTTGGAGAAGATATGCTATAAAGAAACAAAAAAGAGAATTCTTCGAAAAAACCCATTGCTCCTCCGGGATTATTAGTATTTTTCTACACGTTGTGGTTCGTAGCAAAGTGTAACGTTGCTCGTAAAATTTATTGCAGGAATTGGTGGGATAAAAGGTCACAAGTTTTGCACTGCTTTCAATATTTCACGTCCTCGCCTAATCTGGATAATTTTTCACAAGTGTAAGGTTGGGGTGCTCAATTAGGCAGAGGTCAGTCTGTTTTGCAGCACACGTTTTTCTTCTTTTTTTCTTGCTCTTACAATGGGCTAGAAAGCTGCTTTTATGCAGATCAAGTTGG</canonical>
            <polymorphic>GAACTACTTTTTAAGGAGAGTTCTCAATCCAGATCGGATGAAAAACTCAAGTCAGGGAAGCAGAAAATCAGAAAAGGAAATTGAGTTTTCTGAGTCTCATAGAGTTCATTGCTCCAGTTAGACAATGAACTCTGGCACGAACAATAAGAAGATAAATCATGAAAAACCTCAAAAATCGCAGTCTAGCATCATTGAATCAGGTATTTAAAATAACTTTTTTATCAATCACGCTTTTCAAAATACGCAATCTCTTCAGAAATCTATTTGAAGTAGAAAAGAAGAGCCTATATTGACTCACTTTCAAGTTTTTTTCTCTTTTTCCATTTACTAAGCTAACTAAGCTAACTAAACTGAGAAATACTGAATCACTATTTTTTTCAAAGTCTTTTTCTTCTCTATTTTTTTGGATTGGCTGTTCATCTAGTTGAAAATAGTGCAAACGGCTAGTGAGGCTTTTTTTGCGGCACTGGCGGTAAACAGGGATTTAAAGAGAGATAAGRAAAAGAAAACCCGGAAAAGTTTGTGAAAAATGGAAAGCAAAACAAAACGAGTGCTTCCTGAAATTCATCAACTTCTTTTTTTTGACAACTCGAAGGATCATTTATTAGTTGTGTTCCTCCCCAGTGAGTCTAACACTTTGTAACCATCTGAATATACTTGTGGTTGGAGAAGATATGCTATAAAGAAACAAAAAAGAGAATTCTTCGAAAAAACCCATTGCTCCTCCGGGATTATTAGTATTTTTCTACACGTTGTGGTTCGTAGCAAAGTGTAACGTTGCTCGTAAAATTTATTGCAGGAATTGGTGGGATAAAAGGTCACAAGTTTTGCACTGCTTTCAATATTTCACGTCCTCGCCTAATCTGGATAATTTTTCACAAGTGTAAGGTTGGGGTGCTCAATTAGGCAGAGGTCAGTCTGTTTTGCAGCACACGTTTTTCTTCTTTTTTTCTTGCTCTTACAATGGGCTAGAAAGCTGCTTTTATGCAGATCAAGTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCTAGTTGAAAATAGTGCAAAC</pcr_primer_p1>
		<pcr_primer_p2>TCCAACCACAAGTATATTCAGAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CATCTAGTTGAAAATAGTGCAAACGGCTAGTGAGGCTTTTTTTGCGGCACTGGCGGTAAACAGGGATTTAAAGAGAGATAAGAAAAAGAAAACCCGGAAAAGTTTGTGAAAAATGGAAAGCAAAACAAAACGAGTGCTTCCTGAAATTCATCAACTTCTTTTTTTTGACAACTCGAAGGATCATTTATTAGTTGTGTTCCTCCCCAGTGAGTCTAACACTTTGTAACCATCTGAATATACTTGTGGTTGGA</canonical_amplicon>
		<polymorphic_amplicon>CATCTAGTTGAAAATAGTGCAAACGGCTAGTGAGGCTTTTTTTGCGGCACTGGCGGTAAACAGGGATTTAAAGAGAGATAAGRAAAAGAAAACCCGGAAAAGTTTGTGAAAAATGGAAAGCAAAACAAAACGAGTGCTTCCTGAAATTCATCAACTTCTTTTTTTTGACAACTCGAAGGATCATTTATTAGTTGTGTTCCTCCCCAGTGAGTCTAACACTTTGTAACCATCTGAATATACTTGTGGTTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38690</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>993147</contig_pos>
        <strand></strand>
        <context>aaacccttct[A/G]gtattatgat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATTTGTTGTGCAAGATATCAAAAATGTGTCAACTGACAAAACCCTTCT</left_flank>
        <right_flank>GTATTATGATTAACAATTTGTCAGTTGTCCTTTTTTCATATTTCTGACAG</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTGAAGCATCATTTCAGTATATTTTAATTATACTTTCTCAGAATCCTGTGCATAAATAAAGTTTCAAAGAATTTAAAAAGTCGACTTTGATTCTAAAGATCTTCAATCTCACTGATCTATATGTGTGAACGCTTTTTTGCAATGTGTCCAACTCAAATGCATTCAGACGGAATGCATGCAAAGATGTGAATTTCGTGATTTCCTGATTTCGTTTTTCGAAGAGATTTCATAAATACAAATTTGAAAAAAAAATTAAACGAGGCATACAATTAGCGGAGCAACCAATTAACGAATTTTGTGATTTCTAGTTTGTGAGATGTGCTCTACAGTCGGCTGCTGTAAATTTTACAAAACAAAGTTTGAAAACTTGAGTTCCTGTTCAGTCAACAAATACCGTATTACCAGTATTAGAAAAGCTTCACACTGTCAAGCTTAACCTCAATTATCTCATTTGTTGTGCAAGATATCAAAAATGTGTCAACTGACAAAACCCTTCTAGTATTATGATTAACAATTTGTCAGTTGTCCTTTTTTCATATTTCTGACAGTGACCGAGAAATATTGGAACAAATTTAAATGTTCGGAGCCCTTCTATTACAGGTTTCTTTGTGTTAGTGAATTCTGTGCTTTCCTCTAATCTCCATATTTTCTACAGTTGGGAAAATTTCACGAGACGTTGTTTGATCTTTGAGATAGGTTCAAGTTCACAGCGTTCAGAGGGCTTTATAGTTTTTACGCCGCTAGTATAAAAGATAGAGTTTTGAATTGACTAGAAACAATGAACAATTTCCATCGATCCAATGATGATATTGAAGATGGTTTTTGGGCAGCAATGTTCATAAGCTTTTGATTTCTACTACCCACGTACACAATTTCATAAAAGTTATTGAACGCCGTACCCGGAGATCCCAAATCTAGGATTTCTAGTCCCAGAAAGCAGTCCAAAGTGAAGCCCAAGTTCCCACGATTTCCAACCCGCACAGTCGAAACCATTGCAA</canonical>
            <polymorphic>CATTGAAGCATCATTTCAGTATATTTTAATTATACTTTCTCAGAATCCTGTGCATAAATAAAGTTTCAAAGAATTTAAAAAGTCGACTTTGATTCTAAAGATCTTCAATCTCACTGATCTATATGTGTGAACGCTTTTTTGCAATGTGTCCAACTCAAATGCATTCAGACGGAATGCATGCAAAGATGTGAATTTCGTGATTTCCTGATTTCGTTTTTCGAAGAGATTTCATAAATACAAATTTGAAAAAAAAATTAAACGAGGCATACAATTAGCGGAGCAACCAATTAACGAATTTTGTGATTTCTAGTTTGTGAGATGTGCTCTACAGTCGGCTGCTGTAAATTTTACAAAACAAAGTTTGAAAACTTGAGTTCCTGTTCAGTCAACAAATACCGTATTACCAGTATTAGAAAAGCTTCACACTGTCAAGCTTAACCTCAATTATCTCATTTGTTGTGCAAGATATCAAAAATGTGTCAACTGACAAAACCCTTCTRGTATTATGATTAACAATTTGTCAGTTGTCCTTTTTTCATATTTCTGACAGTGACCGAGAAATATTGGAACAAATTTAAATGTTCGGAGCCCTTCTATTACAGGTTTCTTTGTGTTAGTGAATTCTGTGCTTTCCTCTAATCTCCATATTTTCTACAGTTGGGAAAATTTCACGAGACGTTGTTTGATCTTTGAGATAGGTTCAAGTTCACAGCGTTCAGAGGGCTTTATAGTTTTTACGCCGCTAGTATAAAAGATAGAGTTTTGAATTGACTAGAAACAATGAACAATTTCCATCGATCCAATGATGATATTGAAGATGGTTTTTGGGCAGCAATGTTCATAAGCTTTTGATTTCTACTACCCACGTACACAATTTCATAAAAGTTATTGAACGCCGTACCCGGAGATCCCAAATCTAGGATTTCTAGTCCCAGAAAGCAGTCCAAAGTGAAGCCCAAGTTCCCACGATTTCCAACCCGCACAGTCGAAACCATTGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>307 245 191 145 74 29 9</canonical_bands>
                <polymorphic_bands>436 307 145 74 29 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTCCTGTTCAGTCAACAAAT</pcr_primer_p1>
		<pcr_primer_p2>GCACAGAATTCACTAACACAAA</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>AGTTCCTGTTCAGTCAACAAATACCGTATTACCAGTATTAGAAAAGCTTCACACTGTCAAGCTTAACCTCAATTATCTCATTTGTTGTGCAAGATATCAAAAATGTGTCAACTGACAAAACCCTTCTAGTATTATGATTAACAATTTGTCAGTTGTCCTTTTTTCATATTTCTGACAGTGACCGAGAAATATTGGAACAAATTTAAATGTTCGGAGCCCTTCTATTACAGGTTTCTTTGTGTTAGTGAATTCTGTGC</canonical_amplicon>
		<polymorphic_amplicon>AGTTCCTGTTCAGTCAACAAATACCGTATTACCAGTATTAGAAAAGCTTCACACTGTCAAGCTTAACCTCAATTATCTCATTTGTTGTGCAAGATATCAAAAATGTGTCAACTGACAAAACCCTTCTRGTATTATGATTAACAATTTGTCAGTTGTCCTTTTTTCATATTTCTGACAGTGACCGAGAAATATTGGAACAAATTTAAATGTTCGGAGCCCTTCTATTACAGGTTTCTTTGTGTTAGTGAATTCTGTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38691</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1013116</contig_pos>
        <strand>+</strand>
        <context>ATCAGTTTTW[A/T]TTACAATCGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGACATTTGCCTTTTTTATTCCTTTTCCGTAACTTTCCATATCAGTTTTT</left_flank>
        <right_flank>TTACAATCGTTTCATTTCGCATTCTTACTTCAACGTCTCAATTTCTTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATCTAATTTCTGTACCAAACTACATATTCCTCTCTTTTTGGGACATTGTTAAACGGAGAGATCTGATTTCTTTCAATCAAACCAAGAATCATATGATATCTTCCCAAAAAAATCAATTGGCCCTGATGTTGACAGGTCAATATTGACTTTTATTGTCCCCTTCTCAGCTTCCATAAAAACTCCCAGTGATTCGAAGTCTGAATTGAGGTCACCTCCCATTCCAACAATTTTATTACACTGGTCTTCATTCGAATATTCTTCGCCGTGTGTGACTCATTGAACCATTTATTTTCGAAACCGATGAATATGCGGCAACAACGAAAACTTTTTTTGGAAAAAGGTGTCGCATTATTTGCCTAGCAAATGACGTGTTTCACAACTTTGCTGATACTGAAATGATATAAAATACCTCGACCTATCAGCCTATTCCATCAGTGCCTCGTCTTGTGACATTTGCCTTTTTTATTCCTTTTCCGTAACTTTCCATATCAGTTTTTGTTACAATCGTTTCATTTCGCATTCTTACTTCAACGTCTCAATTTCTTTCTTCAACCACAACTCATTTTTTTTTTCTGTTTTCAGTCTTCAATTCACCATGGCTTACAACCCCTACAACGGATCTTACCCATACCCACCACCAGTTGGATACGTGCCACCACCAATGGGATATGCTCCACCACCAATTGCTCCAGTTCCAGTTGTAGCTCCAATCCCAGTGCCAATCGCTACTCCATACATGGCTCCACCAGTCTATGGACCACCACCAGTCGTTGTGATTGAGGAGCCATACCATCATCACCACTGGAACCCATTTCATCATCACCATCATCATTGCTAATTCTTAAAAATTTTTCTGGCGGTCGGGCGGATTTTTGGACTAAATGACTATGTGATTTTGTAATGTTTTGAAATGAATGAATTTTCACGGTTTCTGTTTTATATTCAATCTGGAAAAAAACAATAAATCGGAAAGACAGTTGGTTCATGTTGATCTGTCA</canonical>
            <polymorphic>CAATCTAATTTCTGTACCAAACTACATATTCCTCTCTTTTTGGGACATTGTTAAACGGAGAGATCTGATTTCTTTCAATCAAACCAAGAATCATATGATATCTTCCCAAAAAAATCAATTGGCCCTGATGTTGACAGGTCAATATTGACTTTTATTGTCCCCTTCTCAGCTTCCATAAAAACTCCCAGTGATTCGAAGTCTGAATTGAGGTCACCTCCCATTCCAACAATTTTATTACACTGGTCTTCATTCGAATATTCTTCGCCGTGTGTGACTCATTGAACCATTTATTTTCGAAACCGATGAATATGCGGCAACAACGAAAACTTTTTTTGGAAAAAGGTGTCGCATTATTTGCCTAGCAAATGACGTGTTTCACAACTTTGCTGATACTGAAATGATATAAAATACCTCGACCTATCAGCCTATTCCATCAGTGCCTCGTCTTGTGACATTTGCCTTTTTTATTCCTTTTCCGTAACTTTCCATATCAGTTTTTWTTACAATCGTTTCATTTCGCATTCTTACTTCAACGTCTCAATTTCTTTCTTCAACCACAACTCATTTTTTTTTTCTGTTTTCAGTCTTCAATTCACCATGGCTTACAACCCCTACAACGGATCTTACCCATACCCACCACCAGTTGGATACGTGCCACCACCAATGGGATATGCTCCACCACCAATTGCTCCAGTTCCAGTTGTAGCTCCAATCCCAGTGCCAATCGCTACTCCATACATGGCTCCACCAGTCTATGGACCACCACCAGTCGTTGTGATTGAGGAGCCATACCATCATCACCACTGGAACCCATTTCATCATCACCATCATCATTGCTAATTCTTAAAAATTTTTCTGGCGGTCGGGCGGATTTTTGGACTAAATGACTATGTGATTTTGTAATGTTTTGAAATGAATGAATTTTCACGGTTTCTGTTTTATATTCAATCTGGAAAAAAACAATAAATCGGAAAGACAGTTGGTTCATGTTGATCTGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 209 178 61 29 22</canonical_bands>
                <polymorphic_bands>523 209 178 61 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTTTGCTGATACTGAAATGAT</pcr_primer_p1>
		<pcr_primer_p2>GTATGGGTAAGATCCGTTGTAG</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>AACTTTGCTGATACTGAAATGATATAAAATACCTCGACCTATCAGCCTATTCCATCAGTGCCTCGTCTTGTGACATTTGCCTTTTTTATTCCTTTTCCGTAACTTTCCATATCAGTTTTTGTTACAATCGTTTCATTTCGCATTCTTACTTCAACGTCTCAATTTCTTTCTTCAACCACAACTCATTTTTTTTTTCTGTTTTCAGTCTTCAATTCACCATGGCTTACAACCCCTACAACGGATCTTACCCATAC</canonical_amplicon>
		<polymorphic_amplicon>AACTTTGCTGATACTGAAATGATATAAAATACCTCGACCTATCAGCCTATTCCATCAGTGCCTCGTCTTGTGACATTTGCCTTTTTTATTCCTTTTCCGTAACTTTCCATATCAGTTTTTWTTACAATCGTTTCATTTCGCATTCTTACTTCAACGTCTCAATTTCTTTCTTCAACCACAACTCATTTTTTTTTTCTGTTTTCAGTCTTCAATTCACCATGGCTTACAACCCCTACAACGGATCTTACCCATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38692</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1018326</contig_pos>
        <strand>+</strand>
        <context>TATTTTCTGT[A/T]TGTATGTATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGTGAAAAATGTGAATCATCTGAAGCGAAATTTTGCTGGTATTTTCTGT</left_flank>
        <right_flank>TGTATGTATGTGTGCGCAACACACGAATCACTGATTCATCCATGAAAGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAGATAAATGCGTTTCTACATTTTACAGTACCGGCCAAATAGGTAATTAAGCTATAGTTTTCTCAAATTTCAAAACCATCATAAACTCCTTATTTCTTGATTTTCGAAACAGCTTTTAACAGAAAGTTCGACTAGTTTTAGTAAAAATTGTTTTCTAAGAAAACAATTTCGCAAAACGTTTGGATAAATTAATGAACTGGATGATTTATTGTGAATTTCTGACTATTTTCTTTTCAATAATTTTTTTTCAGTGCTCAATACGATTACGCAACATATGGAAGCGAACGGGCCTACTCCAGCCAAGTGGCATATGATGTACCTCCATCCGAACACTCTCAAGCTGCCAACCTTGGTAATCGCCGGCATAGTGTCCCAGGTAATTTATTATTTTGCTATTTTTAATCTAAATTCCCTGTTTTTACCTTCCAAAGACAACTTTCTTGCCGAAAGTGAAAAATGTGAATCATCTGAAGCGAAATTTTGCTGGTATTTTCTGTATGTATGTATGTGTGCGCAACACACGAATCACTGATTCATCCATGAAAGGGCAACACAAACTAGTGTTTGCTATTCTTCTCCGGCTTTCTTCCCTCAAAATTTTACGATAGTGAAGTCGCTTGGTACTGGATGAAAGTTGGAATCAAAACATATTTGGGACCAAGAGCAACAAAAGCAAAAAATAAATTTTCATTCAAATTCTACCATCCAATTTTACCACATTCAATCAATTTAACAACCTTTACGGTAGTATTCTTAAAATAGGTACGAGTGCAGAAGTGTGGGATGGAGGACGAGTTTTAACGATAAACTATCTGAAAGAGCATAGAAGAAAGAGAGGAGTAAAGACATAGGGAGGGTGTGCGTTATCAGTATTATCAACTTCATCAAATATTCATCATGTACACTTGGTCTTGAAGTTTTCAATACAGAATCGTTTATGTTTTCAAGATGTTTTCTAGAAAAGCTTTTGTTTTTGTTTTTGTTGTCGAAAAGAGTTT</canonical>
            <polymorphic>TCAAGATAAATGCGTTTCTACATTTTACAGTACCGGCCAAATAGGTAATTAAGCTATAGTTTTCTCAAATTTCAAAACCATCATAAACTCCTTATTTCTTGATTTTCGAAACAGCTTTTAACAGAAAGTTCGACTAGTTTTAGTAAAAATTGTTTTCTAAGAAAACAATTTCGCAAAACGTTTGGATAAATTAATGAACTGGATGATTTATTGTGAATTTCTGACTATTTTCTTTTCAATAATTTTTTTTCAGTGCTCAATACGATTACGCAACATATGGAAGCGAACGGGCCTACTCCAGCCAAGTGGCATATGATGTACCTCCATCCGAACACTCTCAAGCTGCCAACCTTGGTAATCGCCGGCATAGTGTCCCAGGTAATTTATTATTTTGCTATTTTTAATCTAAATTCCCTGTTTTTACCTTCCAAAGACAACTTTCTTGCCGAAAGTGAAAAATGTGAATCATCTGAAGCGAAATTTTGCTGGTATTTTCTGTWTGTATGTATGTGTGCGCAACACACGAATCACTGATTCATCCATGAAAGGGCAACACAAACTAGTGTTTGCTATTCTTCTCCGGCTTTCTTCCCTCAAAATTTTACGATAGTGAAGTCGCTTGGTACTGGATGAAAGTTGGAATCAAAACATATTTGGGACCAAGAGCAACAAAAGCAAAAAATAAATTTTCATTCAAATTCTACCATCCAATTTTACCACATTCAATCAATTTAACAACCTTTACGGTAGTATTCTTAAAATAGGTACGAGTGCAGAAGTGTGGGATGGAGGACGAGTTTTAACGATAAACTATCTGAAAGAGCATAGAAGAAAGAGAGGAGTAAAGACATAGGGAGGGTGTGCGTTATCAGTATTATCAACTTCATCAAATATTCATCATGTACACTTGGTCTTGAAGTTTTCAATACAGAATCGTTTATGTTTTCAAGATGTTTTCTAGAAAAGCTTTTGTTTTTGTTTTTGTTGTCGAAAAGAGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAAATTCCCTGTTTTTACCTT</pcr_primer_p1>
		<pcr_primer_p2>ATATGTTTTGATTCCAACTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTAAATTCCCTGTTTTTACCTTCCAAAGACAACTTTCTTGCCGAAAGTGAAAAATGTGAATCATCTGAAGCGAAATTTTGCTGGTATTTTCTGTATGTATGTATGTGTGCGCAACACACGAATCACTGATTCATCCATGAAAGGGCAACACAAACTAGTGTTTGCTATTCTTCTCCGGCTTTCTTCCCTCAAAATTTTACGATAGTGAAGTCGCTTGGTACTGGATGAAAGTTGGAATCAAAACATAT</canonical_amplicon>
		<polymorphic_amplicon>TCTAAATTCCCTGTTTTTACCTTCCAAAGACAACTTTCTTGCCGAAAGTGAAAAATGTGAATCATCTGAAGCGAAATTTTGCTGGTATTTTCTGTWTGTATGTATGTGTGCGCAACACACGAATCACTGATTCATCCATGAAAGGGCAACACAAACTAGTGTTTGCTATTCTTCTCCGGCTTTCTTCCCTCAAAATTTTACGATAGTGAAGTCGCTTGGTACTGGATGAAAGTTGGAATCAAAACATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38693</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1019440</contig_pos>
        <strand>+</strand>
        <context>TATTYCCTCC[C/T]TTTTTCAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCAAAGCTCGACGTTTTCGAACACCCCCATATTTTCCATATTTCCTCC</left_flank>
        <right_flank>TTTTTCAAAAACGTATGACTAACGCTTTTCCTTTCATTTGAATACCATGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGCCGGTCCTTCTAATACGGGTTTCAAGGTACCTAAGTGAGATAAGTGAACTAAAGCTTTTGCTTTTTGAGACACATGAATAAGCCAATTAGTTAGTAAATTGATTAATTTCAATTGACAGTTCGAACAATAAATGGATCAAGAACTATTCGGAAATTTGGTTTTGATCAATCCCAGAAACAATATCACGAGAAAACCAATTTTGAAGATTTATGCATTTTTTTAGTTGTCAAAAAATTTTAATTTTTGGAAGCTTTTAAAACTAGCAGCCGATGTTTTTAGAATTTATGTATTTATGTTTTTAGAATGATTTTATTAGAACCCATCGGCATCGTTTTCATTTGAATTATCGTTTTTGAAATATTCTCAATCCCATTAGGTGGTAAAACTAGCCGTTTCCTATCGATGGGAACTTTTATGGAGAGTTGAATACCAAAACAAATAAACTAATCAAAGCTCGACGTTTTCGAACACCCCCATATTTTCCATATTTCCTCCCTTTTTCAAAAACGTATGACTAACGCTTTTCCTTTCATTTGAATACCATGCGTAGAATATTTTTCAATTTCCGTTTTTTTTACAGACGATATTCGTCATTACGCCGACGAGACAACTCCACCGCCTGTTTTGCACGACGTCGCCGATCGGTAAAGCAAATTTTCGAAAATTATTATTTCCGATTTTATTTCCAGATACTCCACAGTGGCTTATATGAACCACGAGCCAAACCAATACAACACCAGAATCTACTCCCGGTCGCCTACTCGTAGTCAAGTCGGAGTCCGCGACGCTCATCGTTTAAGTCGAGACGATTTGCGAATCGTCGATGCACACAGTAGTCCCAGTGACTCACAATCGGAAGAATTGAGAAGAATGTACTCAGGAAGAAGTGGGAATTCAGTCAAACCAACCGGCGATATAACGTGAGTGCGCTGATAACAACATATGCTCAAAACTCCTTATTTTCTTCCAGCGCGCGTTACGTTTACGACACTGCTA</canonical>
            <polymorphic>GGGCCGGTCCTTCTAATACGGGTTTCAAGGTACCTAAGTGAGATAAGTGAACTAAAGCTTTTGCTTTTTGAGACACATGAATAAGCCAATTAGTTAGTAAATTGATTAATTTCAATTGACAGTTCGAACAATAAATGGATCAAGAACTATTCGGAAATTTGGTTTTGATCAATCCCAGAAACAATATCACGAGAAAACCAATTTTGAAGATTTATGCATTTTTTTAGTTGTCAAAAAATTTTAATTTTTGGAAGCTTTTAAAACTAGCAGCCGATGTTTTTAGAATTTATGTATTTATGTTTTTAGAATGATTTTATTAGAACCCATCGGCATCGTTTTCATTTGAATTATCGTTTTTGAAATATTCTCAATCCCATTAGGTGGTAAAACTAGCCGTTTCCTATCGATGGGAACTTTTATGGAGAGTTGAATACCAAAACAAATAAACTAATCAAAGCTCGACGTTTTCGAACACCCCCATATTTTCCATATTTCCTCCYTTTTTCAAAAACGTATGACTAACGCTTTTCCTTTCATTTGAATACCATGCGTAGAATATTTTTCAATTTCCGTTTTTTTTACAGACGATATTCGTCATTACGCCGACGAGACAACTCCACCGCCTGTTTTGCACGACGTCGCCGATCGGTAAAGCAAATTTTCGAAAATTATTATTTCCGATTTTATTTCCAGATACTCCACAGTGGCTTATATGAACCACGAGCCAAACCAATACAACACCAGAATCTACTCCCGGTCGCCTACTCGTAGTCAAGTCGGAGTCCGCGACGCTCATCGTTTAAGTCGAGACGATTTGCGAATCGTCGATGCACACAGTAGTCCCAGTGACTCACAATCGGAAGAATTGAGAAGAATGTACTCAGGAAGAAGTGGGAATTCAGTCAAACCAACCGGCGATATAACGTGAGTGCGCTGATAACAACATATGCTCAAAACTCCTTATTTTCTTCCAGCGCGCGTTACGTTTACGACACTGCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAATATTCTCAATCCCATTAG</pcr_primer_p1>
		<pcr_primer_p2>AATGACGAATATCGTCTGTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TGAAATATTCTCAATCCCATTAGGTGGTAAAACTAGCCGTTTCCTATCGATGGGAACTTTTATGGAGAGTTGAATACCAAAACAAATAAACTAATCAAAGCTCGACGTTTTCGAACACCCCCATATTTTCCATATTTCCTCCCTTTTTCAAAAACGTATGACTAACGCTTTTCCTTTCATTTGAATACCATGCGTAGAATATTTTTCAATTTCCGTTTTTTTTACAGACGATATTCGTCATT</canonical_amplicon>
		<polymorphic_amplicon>TGAAATATTCTCAATCCCATTAGGTGGTAAAACTAGCCGTTTCCTATCGATGGGAACTTTTATGGAGAGTTGAATACCAAAACAAATAAACTAATCAAAGCTCGACGTTTTCGAACACCCCCATATTTTCCATATTTCCTCCYTTTTTCAAAAACGTATGACTAACGCTTTTCCTTTCATTTGAATACCATGCGTAGAATATTTTTCAATTTCCGTTTTTTTTACAGACGATATTCGTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38694</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1019513</contig_pos>
        <strand>+</strand>
        <context>TCAATTTCCG[C/T]TTTTTTTACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGCTTTTCCTTTCATTTGAATACCATGCGTAGAATATTTTTCAATTTCCG</left_flank>
        <right_flank>TTTTTTTACAGACGATATTCGTCATTACGCCGACGAGACAACTCCACCGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACATGAATAAGCCAATTAGTTAGTAAATTGATTAATTTCAATTGACAGTTCGAACAATAAATGGATCAAGAACTATTCGGAAATTTGGTTTTGATCAATCCCAGAAACAATATCACGAGAAAACCAATTTTGAAGATTTATGCATTTTTTTAGTTGTCAAAAAATTTTAATTTTTGGAAGCTTTTAAAACTAGCAGCCGATGTTTTTAGAATTTATGTATTTATGTTTTTAGAATGATTTTATTAGAACCCATCGGCATCGTTTTCATTTGAATTATCGTTTTTGAAATATTCTCAATCCCATTAGGTGGTAAAACTAGCCGTTTCCTATCGATGGGAACTTTTATGGAGAGTTGAATACCAAAACAAATAAACTAATCAAAGCTCGACGTTTTCGAACACCCCCATATTTTCCATATTTCCTCCCTTTTTCAAAAACGTATGACTAACGCTTTTCCTTTCATTTGAATACCATGCGTAGAATATTTTTCAATTTCCGTTTTTTTTACAGACGATATTCGTCATTACGCCGACGAGACAACTCCACCGCCTGTTTTGCACGACGTCGCCGATCGGTAAAGCAAATTTTCGAAAATTATTATTTCCGATTTTATTTCCAGATACTCCACAGTGGCTTATATGAACCACGAGCCAAACCAATACAACACCAGAATCTACTCCCGGTCGCCTACTCGTAGTCAAGTCGGAGTCCGCGACGCTCATCGTTTAAGTCGAGACGATTTGCGAATCGTCGATGCACACAGTAGTCCCAGTGACTCACAATCGGAAGAATTGAGAAGAATGTACTCAGGAAGAAGTGGGAATTCAGTCAAACCAACCGGCGATATAACGTGAGTGCGCTGATAACAACATATGCTCAAAACTCCTTATTTTCTTCCAGCGCGCGTTACGTTTACGACACTGCTAATCGCAATTATACAGCCTACGGGGAAAGACAAGAGCGACAAGAAAGACAGTCCTACACCGCGTACCCAGCTCA</canonical>
            <polymorphic>CACATGAATAAGCCAATTAGTTAGTAAATTGATTAATTTCAATTGACAGTTCGAACAATAAATGGATCAAGAACTATTCGGAAATTTGGTTTTGATCAATCCCAGAAACAATATCACGAGAAAACCAATTTTGAAGATTTATGCATTTTTTTAGTTGTCAAAAAATTTTAATTTTTGGAAGCTTTTAAAACTAGCAGCCGATGTTTTTAGAATTTATGTATTTATGTTTTTAGAATGATTTTATTAGAACCCATCGGCATCGTTTTCATTTGAATTATCGTTTTTGAAATATTCTCAATCCCATTAGGTGGTAAAACTAGCCGTTTCCTATCGATGGGAACTTTTATGGAGAGTTGAATACCAAAACAAATAAACTAATCAAAGCTCGACGTTTTCGAACACCCCCATATTTTCCATATTTCCTCCCTTTTTCAAAAACGTATGACTAACGCTTTTCCTTTCATTTGAATACCATGCGTAGAATATTTTTCAATTTCCGYTTTTTTTACAGACGATATTCGTCATTACGCCGACGAGACAACTCCACCGCCTGTTTTGCACGACGTCGCCGATCGGTAAAGCAAATTTTCGAAAATTATTATTTCCGATTTTATTTCCAGATACTCCACAGTGGCTTATATGAACCACGAGCCAAACCAATACAACACCAGAATCTACTCCCGGTCGCCTACTCGTAGTCAAGTCGGAGTCCGCGACGCTCATCGTTTAAGTCGAGACGATTTGCGAATCGTCGATGCACACAGTAGTCCCAGTGACTCACAATCGGAAGAATTGAGAAGAATGTACTCAGGAAGAAGTGGGAATTCAGTCAAACCAACCGGCGATATAACGTGAGTGCGCTGATAACAACATATGCTCAAAACTCCTTATTTTCTTCCAGCGCGCGTTACGTTTACGACACTGCTAATCGCAATTATACAGCCTACGGGGAAAGACAAGAGCGACAAGAAAGACAGTCCTACACCGCGTACCCAGCTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACGTATGACTAACGCTTTTC</pcr_primer_p1>
		<pcr_primer_p2>GGGAGTAGATTCTGGTGTTGTAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAACGTATGACTAACGCTTTTCCTTTCATTTGAATACCATGCGTAGAATATTTTTCAATTTCCGTTTTTTTTACAGACGATATTCGTCATTACGCCGACGAGACAACTCCACCGCCTGTTTTGCACGACGTCGCCGATCGGTAAAGCAAATTTTCGAAAATTATTATTTCCGATTTTATTTCCAGATACTCCACAGTGGCTTATATGAACCACGAGCCAAACCAATACAACACCAGAATCTACTCCC</canonical_amplicon>
		<polymorphic_amplicon>AAACGTATGACTAACGCTTTTCCTTTCATTTGAATACCATGCGTAGAATATTTTTCAATTTCCGYTTTTTTTACAGACGATATTCGTCATTACGCCGACGAGACAACTCCACCGCCTGTTTTGCACGACGTCGCCGATCGGTAAAGCAAATTTTCGAAAATTATTATTTCCGATTTTATTTCCAGATACTCCACAGTGGCTTATATGAACCACGAGCCAAACCAATACAACACCAGAATCTACTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38695</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1019660</contig_pos>
        <strand>+</strand>
        <context>TATATGAACC[A/C]CGAGCCAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATTATTTCCGATTTTATTTCCAGATACTCCACAGTGGCTTATATGAACC</left_flank>
        <right_flank>CGAGCCAAACCAATACAACACCAGAATCTACTCCCGGTCGCCTACTCGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTAGTTGTCAAAAAATTTTAATTTTTGGAAGCTTTTAAAACTAGCAGCCGATGTTTTTAGAATTTATGTATTTATGTTTTTAGAATGATTTTATTAGAACCCATCGGCATCGTTTTCATTTGAATTATCGTTTTTGAAATATTCTCAATCCCATTAGGTGGTAAAACTAGCCGTTTCCTATCGATGGGAACTTTTATGGAGAGTTGAATACCAAAACAAATAAACTAATCAAAGCTCGACGTTTTCGAACACCCCCATATTTTCCATATTTCCTCCCTTTTTCAAAAACGTATGACTAACGCTTTTCCTTTCATTTGAATACCATGCGTAGAATATTTTTCAATTTCCGTTTTTTTTACAGACGATATTCGTCATTACGCCGACGAGACAACTCCACCGCCTGTTTTGCACGACGTCGCCGATCGGTAAAGCAAATTTTCGAAAATTATTATTTCCGATTTTATTTCCAGATACTCCACAGTGGCTTATATGAACCACGAGCCAAACCAATACAACACCAGAATCTACTCCCGGTCGCCTACTCGTAGTCAAGTCGGAGTCCGCGACGCTCATCGTTTAAGTCGAGACGATTTGCGAATCGTCGATGCACACAGTAGTCCCAGTGACTCACAATCGGAAGAATTGAGAAGAATGTACTCAGGAAGAAGTGGGAATTCAGTCAAACCAACCGGCGATATAACGTGAGTGCGCTGATAACAACATATGCTCAAAACTCCTTATTTTCTTCCAGCGCGCGTTACGTTTACGACACTGCTAATCGCAATTATACAGCCTACGGGGAAAGACAAGAGCGACAAGAAAGACAGTCCTACACCGCGTACCCAGCTCAAGACAGAAAGCGGTGGTCTAGGTAACAGGAATTGTTGGAAAATCGAAAAAAAACCATAGTTTATTCAGATCGTCGGAGCCACGAAGTGAAACCTACATCAATGACCCGTACTACTCTGGAAAAGATGTGGTATCTGGATATGGAGTC</canonical>
            <polymorphic>TTTTTAGTTGTCAAAAAATTTTAATTTTTGGAAGCTTTTAAAACTAGCAGCCGATGTTTTTAGAATTTATGTATTTATGTTTTTAGAATGATTTTATTAGAACCCATCGGCATCGTTTTCATTTGAATTATCGTTTTTGAAATATTCTCAATCCCATTAGGTGGTAAAACTAGCCGTTTCCTATCGATGGGAACTTTTATGGAGAGTTGAATACCAAAACAAATAAACTAATCAAAGCTCGACGTTTTCGAACACCCCCATATTTTCCATATTTCCTCCCTTTTTCAAAAACGTATGACTAACGCTTTTCCTTTCATTTGAATACCATGCGTAGAATATTTTTCAATTTCCGTTTTTTTTACAGACGATATTCGTCATTACGCCGACGAGACAACTCCACCGCCTGTTTTGCACGACGTCGCCGATCGGTAAAGCAAATTTTCGAAAATTATTATTTCCGATTTTATTTCCAGATACTCCACAGTGGCTTATATGAACCMCGAGCCAAACCAATACAACACCAGAATCTACTCCCGGTCGCCTACTCGTAGTCAAGTCGGAGTCCGCGACGCTCATCGTTTAAGTCGAGACGATTTGCGAATCGTCGATGCACACAGTAGTCCCAGTGACTCACAATCGGAAGAATTGAGAAGAATGTACTCAGGAAGAAGTGGGAATTCAGTCAAACCAACCGGCGATATAACGTGAGTGCGCTGATAACAACATATGCTCAAAACTCCTTATTTTCTTCCAGCGCGCGTTACGTTTACGACACTGCTAATCGCAATTATACAGCCTACGGGGAAAGACAAGAGCGACAAGAAAGACAGTCCTACACCGCGTACCCAGCTCAAGACAGAAAGCGGTGGTCTAGGTAACAGGAATTGTTGGAAAATCGAAAAAAAACCATAGTTTATTCAGATCGTCGGAGCCACGAAGTGAAACCTACATCAATGACCCGTACTACTCTGGAAAAGATGTGGTATCTGGATATGGAGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>163 145 92 91 68 66 63 63 41 40 34 31 20 18 14 14 14 7 5 5 4 2</canonical_bands>
                <polymorphic_bands>163 145 92 91 68 66 63 63 41 40 34 34 31 18 14 14 7 5 5 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTGAATACCATGCGTAGAATA</pcr_primer_p1>
		<pcr_primer_p2>GCAAATCGTCTCGACTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>283</pcr_amplicon_size>
		<canonical_amplicon>ATTTGAATACCATGCGTAGAATATTTTTCAATTTCCGTTTTTTTTACAGACGATATTCGTCATTACGCCGACGAGACAACTCCACCGCCTGTTTTGCACGACGTCGCCGATCGGTAAAGCAAATTTTCGAAAATTATTATTTCCGATTTTATTTCCAGATACTCCACAGTGGCTTATATGAACCACGAGCCAAACCAATACAACACCAGAATCTACTCCCGGTCGCCTACTCGTAGTCAAGTCGGAGTCCGCGACGCTCATCGTTTAAGTCGAGACGATTTGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTGAATACCATGCGTAGAATATTTTTCAATTTCCGTTTTTTTTACAGACGATATTCGTCATTACGCCGACGAGACAACTCCACCGCCTGTTTTGCACGACGTCGCCGATCGGTAAAGCAAATTTTCGAAAATTATTATTTCCGATTTTATTTCCAGATACTCCACAGTGGCTTATATGAACCMCGAGCCAAACCAATACAACACCAGAATCTACTCCCGGTCGCCTACTCGTAGTCAAGTCGGAGTCCGCGACGCTCATCGTTTAAGTCGAGACGATTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38696</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1023031</contig_pos>
        <strand>+</strand>
        <context>CCCAAAAGAW[A/T]TAGAAGACTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAGAAACTGAATGCTCCCACTCTACTGCAAAACTTTTTTCCCAAAAGAA</left_flank>
        <right_flank>TAGAAGACTCAGGTGAAAAAAAAGTAGAGAATGAAAATGGATGCGGATGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTACAAAATGTAATTTTTTGTTGGAATGTTTAATTTACAATCAAAAGCGAATTTTTCGGTTCGTTAAATTTTCTTTTTTTATCTACAAAGCCCAAATTATCGTGATAAACTTTTCAGTCAAGTTTCAAAGAGTCATACCGAAGGATATAATTCTGATATCTTGCAAAAAGTTACTTTCACATTTCACCTGTTTCAACAATGTAAAACGTAAAACTCCAAAAAAAACTGCTATTTGACGTCAGCTATTCCACCACTCAATTCCTATTTTCTCCTCTTTAATCAGGGATTTGTCTATAGAATTTAGGCTAATATATTTTCCATCTATTAGCTGTGTAGTCATATACTTTTTGGCGTGTCTCTTTTTTCTGAAAAAAAAAGAAACTGACACCAAACTTTAGTCTTCTGTTTCCTAGAAAATGTCCTTTTAGCACGCGAAGAAAAAAGGACATTAGAAACTGAATGCTCCCACTCTACTGCAAAACTTTTTTCCCAAAAGAAATAGAAGACTCAGGTGAAAAAAAAGTAGAGAATGAAAATGGATGCGGATGTCTCAAAAAGAGACAGAAGAGCAGATGCTGGAGAAACTAGCCATTTGCATAATTGACGTTGAGGACCACTAGGGTCTCTCAGTGCACACACCTTGAAAATAGTGCATAGGAAGGCAACGAAGGTGAAGAGAAAAAGAGTAAGCTAACGGACGGCTTCCTTATAATTACTAGGGAGGGAAACCGGAGAGAAAGGTTCTATTCAACCAACGCCTTCCCCTTTCGTTCACCCCCCGTTCCATCCGGTTCGTCCTCCTGAGATTTTGCACATACTGCTCTTCCATACATTTCGCATGTGTATTTTTTTTCTTCTAGTCATTTCGTAGCCATGGCAATTCTTTTCTCCCCGTTAGACATGGGCCCGGTTCTATAATATTTTTCTTTGAGATCAGAGAGAGAGGGCTTGCTCTTCGTCTCTCGATTGAGAGAGAGAGAGAGAGGGGAGCTCATCATA</canonical>
            <polymorphic>TGTACAAAATGTAATTTTTTGTTGGAATGTTTAATTTACAATCAAAAGCGAATTTTTCGGTTCGTTAAATTTTCTTTTTTTATCTACAAAGCCCAAATTATCGTGATAAACTTTTCAGTCAAGTTTCAAAGAGTCATACCGAAGGATATAATTCTGATATCTTGCAAAAAGTTACTTTCACATTTCACCTGTTTCAACAATGTAAAACGTAAAACTCCAAAAAAAACTGCTATTTGACGTCAGCTATTCCACCACTCAATTCCTATTTTCTCCTCTTTAATCAGGGATTTGTCTATAGAATTTAGGCTAATATATTTTCCATCTATTAGCTGTGTAGTCATATACTTTTTGGCGTGTCTCTTTTTTCTGAAAAAAAAAGAAACTGACACCAAACTTTAGTCTTCTGTTTCCTAGAAAATGTCCTTTTAGCACGCGAAGAAAAAAGGACATTAGAAACTGAATGCTCCCACTCTACTGCAAAACTTTTTTCCCAAAAGAAWTAGAAGACTCAGGTGAAAAAAAAGTAGAGAATGAAAATGGATGCGGATGTCTCAAAAAGAGACAGAAGAGCAGATGCTGGAGAAACTAGCCATTTGCATAATTGACGTTGAGGACCACTAGGGTCTCTCAGTGCACACACCTTGAAAATAGTGCATAGGAAGGCAACGAAGGTGAAGAGAAAAAGAGTAAGCTAACGGACGGCTTCCTTATAATTACTAGGGAGGGAAACCGGAGAGAAAGGTTCTATTCAACCAACGCCTTCCCCTTTCGTTCACCCCCCGTTCCATCCGGTTCGTCCTCCTGAGATTTTGCACATACTGCTCTTCCATACATTTCGCATGTGTATTTTTTTTCTTCTAGTCATTTCGTAGCCATGGCAATTCTTTTCTCCCCGTTAGACATGGGCCCGGTTCTATAATATTTTTCTTTGAGATCAGAGAGAGAGGGCTTGCTCTTCGTCTCTCGATTGAGAGAGAGAGAGAGAGGGGAGCTCATCATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCTAGAAAATGTCCTTTTAGC</pcr_primer_p1>
		<pcr_primer_p2>TATGCACTATTTTCAAGGTGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCCTAGAAAATGTCCTTTTAGCACGCGAAGAAAAAAGGACATTAGAAACTGAATGCTCCCACTCTACTGCAAAACTTTTTTCCCAAAAGAAATAGAAGACTCAGGTGAAAAAAAAGTAGAGAATGAAAATGGATGCGGATGTCTCAAAAAGAGACAGAAGAGCAGATGCTGGAGAAACTAGCCATTTGCATAATTGACGTTGAGGACCACTAGGGTCTCTCAGTGCACACACCTTGAAAATAGTGCATA</canonical_amplicon>
		<polymorphic_amplicon>TTCCTAGAAAATGTCCTTTTAGCACGCGAAGAAAAAAGGACATTAGAAACTGAATGCTCCCACTCTACTGCAAAACTTTTTTCCCAAAAGAAWTAGAAGACTCAGGTGAAAAAAAAGTAGAGAATGAAAATGGATGCGGATGTCTCAAAAAGAGACAGAAGAGCAGATGCTGGAGAAACTAGCCATTTGCATAATTGACGTTGAGGACCACTAGGGTCTCTCAGTGCACACACCTTGAAAATAGTGCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38697</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1023047</contig_pos>
        <strand>+</strand>
        <context>GACTCAGGTG[C/T]AAAAAAAGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCACTCTACTGCAAAACTTTTTTCCCAAAAGAAATAGAAGACTCAGGTG</left_flank>
        <right_flank>AAAAAAAGTAGAGAATGAAAATGGATGCGGATGTCTCAAAAAGAGACAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGTTGGAATGTTTAATTTACAATCAAAAGCGAATTTTTCGGTTCGTTAAATTTTCTTTTTTTATCTACAAAGCCCAAATTATCGTGATAAACTTTTCAGTCAAGTTTCAAAGAGTCATACCGAAGGATATAATTCTGATATCTTGCAAAAAGTTACTTTCACATTTCACCTGTTTCAACAATGTAAAACGTAAAACTCCAAAAAAAACTGCTATTTGACGTCAGCTATTCCACCACTCAATTCCTATTTTCTCCTCTTTAATCAGGGATTTGTCTATAGAATTTAGGCTAATATATTTTCCATCTATTAGCTGTGTAGTCATATACTTTTTGGCGTGTCTCTTTTTTCTGAAAAAAAAAGAAACTGACACCAAACTTTAGTCTTCTGTTTCCTAGAAAATGTCCTTTTAGCACGCGAAGAAAAAAGGACATTAGAAACTGAATGCTCCCACTCTACTGCAAAACTTTTTTCCCAAAAGAAATAGAAGACTCAGGTGAAAAAAAAGTAGAGAATGAAAATGGATGCGGATGTCTCAAAAAGAGACAGAAGAGCAGATGCTGGAGAAACTAGCCATTTGCATAATTGACGTTGAGGACCACTAGGGTCTCTCAGTGCACACACCTTGAAAATAGTGCATAGGAAGGCAACGAAGGTGAAGAGAAAAAGAGTAAGCTAACGGACGGCTTCCTTATAATTACTAGGGAGGGAAACCGGAGAGAAAGGTTCTATTCAACCAACGCCTTCCCCTTTCGTTCACCCCCCGTTCCATCCGGTTCGTCCTCCTGAGATTTTGCACATACTGCTCTTCCATACATTTCGCATGTGTATTTTTTTTCTTCTAGTCATTTCGTAGCCATGGCAATTCTTTTCTCCCCGTTAGACATGGGCCCGGTTCTATAATATTTTTCTTTGAGATCAGAGAGAGAGGGCTTGCTCTTCGTCTCTCGATTGAGAGAGAGAGAGAGAGGGGAGCTCATCATATTTATTTCTGTTTTCC</canonical>
            <polymorphic>TTTTGTTGGAATGTTTAATTTACAATCAAAAGCGAATTTTTCGGTTCGTTAAATTTTCTTTTTTTATCTACAAAGCCCAAATTATCGTGATAAACTTTTCAGTCAAGTTTCAAAGAGTCATACCGAAGGATATAATTCTGATATCTTGCAAAAAGTTACTTTCACATTTCACCTGTTTCAACAATGTAAAACGTAAAACTCCAAAAAAAACTGCTATTTGACGTCAGCTATTCCACCACTCAATTCCTATTTTCTCCTCTTTAATCAGGGATTTGTCTATAGAATTTAGGCTAATATATTTTCCATCTATTAGCTGTGTAGTCATATACTTTTTGGCGTGTCTCTTTTTTCTGAAAAAAAAAGAAACTGACACCAAACTTTAGTCTTCTGTTTCCTAGAAAATGTCCTTTTAGCACGCGAAGAAAAAAGGACATTAGAAACTGAATGCTCCCACTCTACTGCAAAACTTTTTTCCCAAAAGAAATAGAAGACTCAGGTGYAAAAAAAGTAGAGAATGAAAATGGATGCGGATGTCTCAAAAAGAGACAGAAGAGCAGATGCTGGAGAAACTAGCCATTTGCATAATTGACGTTGAGGACCACTAGGGTCTCTCAGTGCACACACCTTGAAAATAGTGCATAGGAAGGCAACGAAGGTGAAGAGAAAAAGAGTAAGCTAACGGACGGCTTCCTTATAATTACTAGGGAGGGAAACCGGAGAGAAAGGTTCTATTCAACCAACGCCTTCCCCTTTCGTTCACCCCCCGTTCCATCCGGTTCGTCCTCCTGAGATTTTGCACATACTGCTCTTCCATACATTTCGCATGTGTATTTTTTTTCTTCTAGTCATTTCGTAGCCATGGCAATTCTTTTCTCCCCGTTAGACATGGGCCCGGTTCTATAATATTTTTCTTTGAGATCAGAGAGAGAGGGCTTGCTCTTCGTCTCTCGATTGAGAGAGAGAGAGAGAGGGGAGCTCATCATATTTATTTCTGTTTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCTAGAAAATGTCCTTTTAGC</pcr_primer_p1>
		<pcr_primer_p2>TATGCACTATTTTCAAGGTGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCCTAGAAAATGTCCTTTTAGCACGCGAAGAAAAAAGGACATTAGAAACTGAATGCTCCCACTCTACTGCAAAACTTTTTTCCCAAAAGAAATAGAAGACTCAGGTGAAAAAAAAGTAGAGAATGAAAATGGATGCGGATGTCTCAAAAAGAGACAGAAGAGCAGATGCTGGAGAAACTAGCCATTTGCATAATTGACGTTGAGGACCACTAGGGTCTCTCAGTGCACACACCTTGAAAATAGTGCATA</canonical_amplicon>
		<polymorphic_amplicon>TTCCTAGAAAATGTCCTTTTAGCACGCGAAGAAAAAAGGACATTAGAAACTGAATGCTCCCACTCTACTGCAAAACTTTTTTCCCAAAAGAAATAGAAGACTCAGGTGYAAAAAAAGTAGAGAATGAAAATGGATGCGGATGTCTCAAAAAGAGACAGAAGAGCAGATGCTGGAGAAACTAGCCATTTGCATAATTGACGTTGAGGACCACTAGGGTCTCTCAGTGCACACACCTTGAAAATAGTGCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38698</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1023133</contig_pos>
        <strand>+</strand>
        <context>ATTTGCATAA[C/T]TGACGTTGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAAAAAGAGACAGAAGAGCAGATGCTGGAGAAACTAGCCATTTGCATAA</left_flank>
        <right_flank>TGACGTTGAGGACCACTAGGGTCTCTCAGTGCACACACCTTGAAAATAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGATAAACTTTTCAGTCAAGTTTCAAAGAGTCATACCGAAGGATATAATTCTGATATCTTGCAAAAAGTTACTTTCACATTTCACCTGTTTCAACAATGTAAAACGTAAAACTCCAAAAAAAACTGCTATTTGACGTCAGCTATTCCACCACTCAATTCCTATTTTCTCCTCTTTAATCAGGGATTTGTCTATAGAATTTAGGCTAATATATTTTCCATCTATTAGCTGTGTAGTCATATACTTTTTGGCGTGTCTCTTTTTTCTGAAAAAAAAAGAAACTGACACCAAACTTTAGTCTTCTGTTTCCTAGAAAATGTCCTTTTAGCACGCGAAGAAAAAAGGACATTAGAAACTGAATGCTCCCACTCTACTGCAAAACTTTTTTCCCAAAAGAAATAGAAGACTCAGGTGAAAAAAAAGTAGAGAATGAAAATGGATGCGGATGTCTCAAAAAGAGACAGAAGAGCAGATGCTGGAGAAACTAGCCATTTGCATAATTGACGTTGAGGACCACTAGGGTCTCTCAGTGCACACACCTTGAAAATAGTGCATAGGAAGGCAACGAAGGTGAAGAGAAAAAGAGTAAGCTAACGGACGGCTTCCTTATAATTACTAGGGAGGGAAACCGGAGAGAAAGGTTCTATTCAACCAACGCCTTCCCCTTTCGTTCACCCCCCGTTCCATCCGGTTCGTCCTCCTGAGATTTTGCACATACTGCTCTTCCATACATTTCGCATGTGTATTTTTTTTCTTCTAGTCATTTCGTAGCCATGGCAATTCTTTTCTCCCCGTTAGACATGGGCCCGGTTCTATAATATTTTTCTTTGAGATCAGAGAGAGAGGGCTTGCTCTTCGTCTCTCGATTGAGAGAGAGAGAGAGAGGGGAGCTCATCATATTTATTTCTGTTTTCCGGCTCTTGATGAGCCTCTTATTTGGCCACTGTGAATGTGTAATCGTTGTGGTCTCCTCTGCCCCGCCTACGAACGCTCTTCTAAAA</canonical>
            <polymorphic>GTGATAAACTTTTCAGTCAAGTTTCAAAGAGTCATACCGAAGGATATAATTCTGATATCTTGCAAAAAGTTACTTTCACATTTCACCTGTTTCAACAATGTAAAACGTAAAACTCCAAAAAAAACTGCTATTTGACGTCAGCTATTCCACCACTCAATTCCTATTTTCTCCTCTTTAATCAGGGATTTGTCTATAGAATTTAGGCTAATATATTTTCCATCTATTAGCTGTGTAGTCATATACTTTTTGGCGTGTCTCTTTTTTCTGAAAAAAAAAGAAACTGACACCAAACTTTAGTCTTCTGTTTCCTAGAAAATGTCCTTTTAGCACGCGAAGAAAAAAGGACATTAGAAACTGAATGCTCCCACTCTACTGCAAAACTTTTTTCCCAAAAGAAATAGAAGACTCAGGTGAAAAAAAAGTAGAGAATGAAAATGGATGCGGATGTCTCAAAAAGAGACAGAAGAGCAGATGCTGGAGAAACTAGCCATTTGCATAAYTGACGTTGAGGACCACTAGGGTCTCTCAGTGCACACACCTTGAAAATAGTGCATAGGAAGGCAACGAAGGTGAAGAGAAAAAGAGTAAGCTAACGGACGGCTTCCTTATAATTACTAGGGAGGGAAACCGGAGAGAAAGGTTCTATTCAACCAACGCCTTCCCCTTTCGTTCACCCCCCGTTCCATCCGGTTCGTCCTCCTGAGATTTTGCACATACTGCTCTTCCATACATTTCGCATGTGTATTTTTTTTCTTCTAGTCATTTCGTAGCCATGGCAATTCTTTTCTCCCCGTTAGACATGGGCCCGGTTCTATAATATTTTTCTTTGAGATCAGAGAGAGAGGGCTTGCTCTTCGTCTCTCGATTGAGAGAGAGAGAGAGAGGGGAGCTCATCATATTTATTTCTGTTTTCCGGCTCTTGATGAGCCTCTTATTTGGCCACTGTGAATGTGTAATCGTTGTGGTCTCCTCTGCCCCGCCTACGAACGCTCTTCTAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>301 223 168 112 108 47 41</canonical_bands>
                <polymorphic_bands>413 223 168 108 47 41</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCTAGAAAATGTCCTTTTAGC</pcr_primer_p1>
		<pcr_primer_p2>TATGCACTATTTTCAAGGTGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCCTAGAAAATGTCCTTTTAGCACGCGAAGAAAAAAGGACATTAGAAACTGAATGCTCCCACTCTACTGCAAAACTTTTTTCCCAAAAGAAATAGAAGACTCAGGTGAAAAAAAAGTAGAGAATGAAAATGGATGCGGATGTCTCAAAAAGAGACAGAAGAGCAGATGCTGGAGAAACTAGCCATTTGCATAATTGACGTTGAGGACCACTAGGGTCTCTCAGTGCACACACCTTGAAAATAGTGCATA</canonical_amplicon>
		<polymorphic_amplicon>TTCCTAGAAAATGTCCTTTTAGCACGCGAAGAAAAAAGGACATTAGAAACTGAATGCTCCCACTCTACTGCAAAACTTTTTTCCCAAAAGAAATAGAAGACTCAGGTGAAAAAAAAGTAGAGAATGAAAATGGATGCGGATGTCTCAAAAAGAGACAGAAGAGCAGATGCTGGAGAAACTAGCCATTTGCATAAYTGACGTTGAGGACCACTAGGGTCTCTCAGTGCACACACCTTGAAAATAGTGCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38699</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1026895</contig_pos>
        <strand>+</strand>
        <context>TTCATCTCTT[C/T]GAGTRACTAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTT</left_flank>
        <right_flank>GAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTG</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGACACATACAGTTACAGTAAAAGTAGCAATTTTTCTTTCCTGATGATTAGTTGTTGATAAGTTTTACCATTTTTTTCCATTATCAACCTTGACCTGACTGACTACTCCACTCAATCTCGTGTGCTAATTCTGTTTTGTCAGTTGGCTACTCTCGTACCCGGGAATGAAGAGTGGAAGGAAACAAATCTTGTTTTACACTAGTTATCGCACCCGATCACTCTTTTCTTCAATTAGGTGCGTTAACTGATGATGTTTTCGAAATTCAGACTTAATCAGCAATCCTGTTGTACAACACAATATATTCCTCATGAAAAATTTCTGTTTTATTACCCCACAAAGTGCACAATTCTGTGCTTCATGAATCTCAGTTTCTGATCCAATTTGTGAGCCAAAAATCTGAAAGTGCAAACCCATCATGTTATCGTGATTGATGCAGTCAAGTAATCCACAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTATTTTCCCATATATGGCTAAATCAGCAGGTTTCTTTCAATTTCTTTTTTTTTTGTCAGTAGACTTGGAGCTTGTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAGGTAGTAGAAGAGAGCAGGCGATCTATTTGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGGAAAACG</canonical>
            <polymorphic>AAGACACATACAGTTACAGTAAAAGTAGCAATTTTTCTTTCCTGATGATTAGTTGTTGATAAGTTTTACCATTTTTTTCCATTATCAACCTTGACCTGACTGACTACTCCACTCAATCTCGTGTGCTAATTCTGTTTTGTCAGTTGGCTACTCTCGTACCCGGGAATGAAGAGTGGAAGGAAACAAATCTTGTTTTACACTAGTTATCGCACCCGATCACTCTTTTCTTCAATTAGGTGCGTTAACTGATGATGTTTTCGAAATTCAGACTTAATCAGCAATCCTGTTGTACAACACAATATATTCCTCATGAAAAATTTCTGTTTTATTACCCCACAAAGTGCACAATTCTGTGCTTCATGAATCTCAGTTTCTGATCCAATTTGTGAGCCAAAAATCTGAAAGTGCAAACCCATCATGTTATCGTGATTGATGCAGTCAAGTAATCCACAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTYGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTATTTTCCCATATATGGCTAAATCAGCAGGTTTCTTTCAATTTCTTTTTTTTTTGTCAGTAGACTTGGAGCTTGTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAGGTAGTAGAAGAGAGCAGGCGATCTATTTGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGGAAAACG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>333 259 241 69 53 37 8</canonical_bands>
                <polymorphic_bands>574 259 69 53 37 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTCAAGTAATCCACAGTTGTCT</pcr_primer_p1>
		<pcr_primer_p2>GAGAAGTGATAGTCAACCAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGTCAAGTAATCCACAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTC</canonical_amplicon>
		<polymorphic_amplicon>AGTCAAGTAATCCACAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTYGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38700</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1026900</contig_pos>
        <strand>+</strand>
        <context>CTCTTYGAGT[A/G]ACTATTCTTR</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGT</left_flank>
        <right_flank>ACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAA</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATACAGTTACAGTAAAAGTAGCAATTTTTCTTTCCTGATGATTAGTTGTTGATAAGTTTTACCATTTTTTTCCATTATCAACCTTGACCTGACTGACTACTCCACTCAATCTCGTGTGCTAATTCTGTTTTGTCAGTTGGCTACTCTCGTACCCGGGAATGAAGAGTGGAAGGAAACAAATCTTGTTTTACACTAGTTATCGCACCCGATCACTCTTTTCTTCAATTAGGTGCGTTAACTGATGATGTTTTCGAAATTCAGACTTAATCAGCAATCCTGTTGTACAACACAATATATTCCTCATGAAAAATTTCTGTTTTATTACCCCACAAAGTGCACAATTCTGTGCTTCATGAATCTCAGTTTCTGATCCAATTTGTGAGCCAAAAATCTGAAAGTGCAAACCCATCATGTTATCGTGATTGATGCAGTCAAGTAATCCACAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTATTTTCCCATATATGGCTAAATCAGCAGGTTTCTTTCAATTTCTTTTTTTTTTGTCAGTAGACTTGGAGCTTGTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAGGTAGTAGAAGAGAGCAGGCGATCTATTTGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGGAAAACGTATTC</canonical>
            <polymorphic>ACATACAGTTACAGTAAAAGTAGCAATTTTTCTTTCCTGATGATTAGTTGTTGATAAGTTTTACCATTTTTTTCCATTATCAACCTTGACCTGACTGACTACTCCACTCAATCTCGTGTGCTAATTCTGTTTTGTCAGTTGGCTACTCTCGTACCCGGGAATGAAGAGTGGAAGGAAACAAATCTTGTTTTACACTAGTTATCGCACCCGATCACTCTTTTCTTCAATTAGGTGCGTTAACTGATGATGTTTTCGAAATTCAGACTTAATCAGCAATCCTGTTGTACAACACAATATATTCCTCATGAAAAATTTCTGTTTTATTACCCCACAAAGTGCACAATTCTGTGCTTCATGAATCTCAGTTTCTGATCCAATTTGTGAGCCAAAAATCTGAAAGTGCAAACCCATCATGTTATCGTGATTGATGCAGTCAAGTAATCCACAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTRACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTATTTTCCCATATATGGCTAAATCAGCAGGTTTCTTTCAATTTCTTTTTTTTTTGTCAGTAGACTTGGAGCTTGTCGGATTTATATTTCCAATTTTGCAACAATCAATCGCCACGTGTCTTCAGTGAATGTATATTTCGAAAATCGTAAAAGTACGAGTGATGATGATTAGGTGACCACGCATTGCACTTCGACGAGTCGACGATGATGATAGAGATGTGAAAAGGATAGGTAGTAGAAGAGAGCAGGCGATCTATTTGACAGCTGTCGAGGGTAGGAAAGGACCCCTGAAATGAAAGGAAAACGTATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>125 118 106 90 57 55 51 50 40 34 33 33 24 22 21 20 19 14 12 12 10 9 9 9 8 7 4 4 2 2</canonical_bands>
                <polymorphic_bands>180 118 106 90 57 51 50 40 34 33 33 24 22 21 20 19 14 12 12 10 9 9 9 8 7 4 4 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>497 364 139</canonical_bands>
                <polymorphic_bands>861 139</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTTGTCTTTTTCATTCTGAAC</pcr_primer_p1>
		<pcr_primer_p2>ATAATGAGCACGAGAAGTGATAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTGACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTAT</canonical_amplicon>
		<polymorphic_amplicon>CAGTTGTCTTTTTCATTCTGAACCAATTCATTCTCAGTTTTCATCTCTTCGAGTRACTATTCTTAAAATTACTTTTTCATTTTGAATGAAATAGATTCTGTTTAAAACAGAAAGCTAATTTTTGTTTTGAAAAGTTTTTCTCTAGCCCAAACTTTCAGAGTTTTTGATTTATTAATTGTGATATCTCATGAGACTGAGAGCAAGTTTAATTATATCTTTGGTTGACTATCACTTCTCGTGCTCATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38701</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1030953</contig_pos>
        <strand>+</strand>
        <context>ATTTTGGAAT[C/T]TATATGATTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATTCAATTTTTGATTTCAAGTCGAACGTAAGTTTTTATTATTTTGGAAT</left_flank>
        <right_flank>TATATGATTGAAAAACTGGGGAAAAAATCAAGAAAGTGGGGTTGTGTAAG</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATGTATCGAAACGGCCCCAATTTTCCGGTCCCATCAACTGGAAGTGTGGCTTCGCGAATCACGGAGTTCGAAAAACGACCAGGCACTCCGATTGTCCAACTCTCTACCACCACAGTCAAATACAACGAAAATGTACCAGTTGCAATGTCGCCCAAATCCGCACAGCAAACCAATGGCAACATGAGTCCACGGAGTGCAGTGTTTCGTGCCAAGCCGGTTATTCACGTGGACATGGGCAGCACTTACCATCAGCAGACGCCATCAGCAGCACCGATCCGCCAGATTCAAGTGCATACGGTACAGAGTCAGGGTCAGCAGCCGCAGAACCATCAAAGTAGCGGAAGCCATCCAATCTACCAAAACCATCATCAAAATTTTCAACAACAGCAACCAAACAACTATCGCCAGCATCAACAGCTTCCGATTAAGCAACATGACACGGCAACTCATTCAATTTTTGATTTCAAGTCGAACGTAAGTTTTTATTATTTTGGAATCTATATGATTGAAAAACTGGGGAAAAAATCAAGAAAGTGGGGTTGTGTAAGCCAAAAAATCTCACTTGGCACTTTTTATGATTGAAATTTGTAGATTTCCCTGGACTACTGTATTAATAGCGCCTTTCTCTGTATTATGTACTCTTGAACTTGTGATAGACTATTGTCAACAAAACTCTTCAAAACTGTTCATCGGAAATTTTGTTATGATTTCAATTTCAAGTTGGTCGCTTATATTGATGCCACCAGAATTGCTTCCCCGTTTCTGAAAACTTCACAATATTCTGTTAATTTAAAATTCCTCACATTAAGATAACAGATTTATATTTCAAGATAATTTTTCTTATATATATTTTTTTTGAAAAATTTTCTACAAAATTCAATTTTGACTTTTTCACCTTAATAGGTTCATTTTCTAGAAAGTGCATTGAATTTTTTTTAGAAATTTCTAGGTTTTCCAAAACGTCAATTTTCTTCTATGCGAAACTAGTAATTTCGTCT</canonical>
            <polymorphic>CAATGTATCGAAACGGCCCCAATTTTCCGGTCCCATCAACTGGAAGTGTGGCTTCGCGAATCACGGAGTTCGAAAAACGACCAGGCACTCCGATTGTCCAACTCTCTACCACCACAGTCAAATACAACGAAAATGTACCAGTTGCAATGTCGCCCAAATCCGCACAGCAAACCAATGGCAACATGAGTCCACGGAGTGCAGTGTTTCGTGCCAAGCCGGTTATTCACGTGGACATGGGCAGCACTTACCATCAGCAGACGCCATCAGCAGCACCGATCCGCCAGATTCAAGTGCATACGGTACAGAGTCAGGGTCAGCAGCCGCAGAACCATCAAAGTAGCGGAAGCCATCCAATCTACCAAAACCATCATCAAAATTTTCAACAACAGCAACCAAACAACTATCGCCAGCATCAACAGCTTCCGATTAAGCAACATGACACGGCAACTCATTCAATTTTTGATTTCAAGTCGAACGTAAGTTTTTATTATTTTGGAATYTATATGATTGAAAAACTGGGGAAAAAATCAAGAAAGTGGGGTTGTGTAAGCCAAAAAATCTCACTTGGCACTTTTTATGATTGAAATTTGTAGATTTCCCTGGACTACTGTATTAATAGCGCCTTTCTCTGTATTATGTACTCTTGAACTTGTGATAGACTATTGTCAACAAAACTCTTCAAAACTGTTCATCGGAAATTTTGTTATGATTTCAATTTCAAGTTGGTCGCTTATATTGATGCCACCAGAATTGCTTCCCCGTTTCTGAAAACTTCACAATATTCTGTTAATTTAAAATTCCTCACATTAAGATAACAGATTTATATTTCAAGATAATTTTTCTTATATATATTTTTTTTGAAAAATTTTCTACAAAATTCAATTTTGACTTTTTCACCTTAATAGGTTCATTTTCTAGAAAGTGCATTGAATTTTTTTTAGAAATTTCTAGGTTTTCCAAAACGTCAATTTTCTTCTATGCGAAACTAGTAATTTCGTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>504 191 127 99 58 21</canonical_bands>
                <polymorphic_bands>695 127 99 58 21</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>504 226 212 58</canonical_bands>
                <polymorphic_bands>716 226 58</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACTCATTCAATTTTTGATTTC</pcr_primer_p1>
		<pcr_primer_p2>ATGAACAGTTTTGAAGAGTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAACTCATTCAATTTTTGATTTCAAGTCGAACGTAAGTTTTTATTATTTTGGAATCTATATGATTGAAAAACTGGGGAAAAAATCAAGAAAGTGGGGTTGTGTAAGCCAAAAAATCTCACTTGGCACTTTTTATGATTGAAATTTGTAGATTTCCCTGGACTACTGTATTAATAGCGCCTTTCTCTGTATTATGTACTCTTGAACTTGTGATAGACTATTGTCAACAAAACTCTTCAAAACTGTTCAT</canonical_amplicon>
		<polymorphic_amplicon>CAACTCATTCAATTTTTGATTTCAAGTCGAACGTAAGTTTTTATTATTTTGGAATYTATATGATTGAAAAACTGGGGAAAAAATCAAGAAAGTGGGGTTGTGTAAGCCAAAAAATCTCACTTGGCACTTTTTATGATTGAAATTTGTAGATTTCCCTGGACTACTGTATTAATAGCGCCTTTCTCTGTATTATGTACTCTTGAACTTGTGATAGACTATTGTCAACAAAACTCTTCAAAACTGTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38702</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1080889</contig_pos>
        <strand>+</strand>
        <context>CAGAAGTAAT[C/T]MGACTCTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTGCCGAGCTTACTTTTAGAACTAAAAGAGTAAGCTCGGCAGAAGTAAT</left_flank>
        <right_flank>AGACTCTTTGATTCCCATAAAACTGGTCCCGCCCACTGAAAGACCGGGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAATTGTAAGTCTACAACTCTTGTTCCGGATGGACTAGAAAAGAAGCGTCCGTCTCAATAAGCTCATTAAAGTTTTGGAGTTGTCACTTAAAATGATAAGAACTGCAACACGAATAAGAGCATGATAATTGATGATCAAATCTGAAACATGAAGTTTCAGACAGAAAAAAGTGGTCACACTGGGAGAATAGATGTTTCATTAGGCAGTTTAACAAAATATCGTATTTCAGGATTAGATCTTTGATATTTTGAAATTCTGAGATCCTGAAACGTTGAGATTAGGTTTCGACATTTTCAGATCGTAAAATTCCTCGAGCCAATGAGACTAACTTTCGGAGGTTTCTGTGCTTTTGAAATTTACGGATTCAGAGAAAATTAGTTTCTTGGATTCTGGCAAGTCGTTTTTTTTATTCCGTCAATTGTCTGAAGGCAAACTTACCTGGAACTTCTGCCGAGCTTACTTTTAGAACTAAAAGAGTAAGCTCGGCAGAAGTAATCAGACTCTTTGATTCCCATAAAACTGGTCCCGCCCACTGAAAGACCGGGATACGGATTTAATCAAGTCCGAGTGACTTGAAATGTGCTAAAGAGGTCAAAAAATGTCTTTATGGAGTTTTAGATTAATCAAACCTGGTACTAGACCAAAACCAAGAAATTCCAGGAAATTCAATTTCAATTACTAGTAAGAAGATAAAATGTATTCTGGTCCAATACACGAAAATTCCTGAAAAACAGCATGGACAACAACGGAGACAGAAATAAAAATGGAATGGAAGTACACATACACACACTATGTTTTCAATTATAACCCTTTACTGACGGTGACAATTATTTCCAATTTCCTTAGCAGTGAAGAACAAGGAGAAATTTCTGTCGGCAACACTTTTTTTTCTCCTGTGCTGCTACCAACTTCTTACGTGATTTTGTTTGGTTTAAAGAAGGGACAGGAAGGACCTTCTTTTCCAGAGCTGGTGGTAAAAGGAAGAAAACGGAAGAGT</canonical>
            <polymorphic>TTGAATTGTAAGTCTACAACTCTTGTTCCGGATGGACTAGAAAAGAAGCGTCCGTCTCAATAAGCTCATTAAAGTTTTGGAGTTGTCACTTAAAATGATAAGAACTGCAACACGAATAAGAGCATGATAATTGATGATCAAATCTGAAACATGAAGTTTCAGACAGAAAAAAGTGGTCACACTGGGAGAATAGATGTTTCATTAGGCAGTTTAACAAAATATCGTATTTCAGGATTAGATCTTTGATATTTTGAAATTCTGAGATCCTGAAACGTTGAGATTAGGTTTCGACATTTTCAGATCGTAAAATTCCTCGAGCCAATGAGACTAACTTTCGGAGGTTTCTGTGCTTTTGAAATTTACGGATTCAGAGAAAATTAGTTTCTTGGATTCTGGCAAGTCGTTTTTTTTATTCCGTCAATTGTCTGAAGGCAAACTTACCTGGAACTTCTGCCGAGCTTACTTTTAGAACTAAAAGAGTAAGCTCGGCAGAAGTAATYAGACTCTTTGATTCCCATAAAACTGGTCCCGCCCACTGAAAGACCGGGATACGGATTTAATCAAGTCCGAGTGACTTGAAATGTGCTAAAGAGGTCAAAAAATGTCTTTATGGAGTTTTAGATTAATCAAACCTGGTACTAGACCAAAACCAAGAAATTCCAGGAAATTCAATTTCAATTACTAGTAAGAAGATAAAATGTATTCTGGTCCAATACACGAAAATTCCTGAAAAACAGCATGGACAACAACGGAGACAGAAATAAAAATGGAATGGAAGTACACATACACACACTATGTTTTCAATTATAACCCTTTACTGACGGTGACAATTATTTCCAATTTCCTTAGCAGTGAAGAACAAGGAGAAATTTCTGTCGGCAACACTTTTTTTTCTCCTGTGCTGCTACCAACTTCTTACGTGATTTTGTTTGGTTTAAAGAAGGGACAGGAAGGACCTTCTTTTCCAGAGCTGGTGGTAAAAGGAAGAAAACGGAAGAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>432 145 99 74 67 57 39 38 33 16</canonical_bands>
                <polymorphic_bands>432 145 141 99 57 39 38 33 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTTACGGATTCAGAGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGACCTCTTTAGCACATT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAATTTACGGATTCAGAGAAAATTAGTTTCTTGGATTCTGGCAAGTCGTTTTTTTTATTCCGTCAATTGTCTGAAGGCAAACTTACCTGGAACTTCTGCCGAGCTTACTTTTAGAACTAAAAGAGTAAGCTCGGCAGAAGTAATCAGACTCTTTGATTCCCATAAAACTGGTCCCGCCCACTGAAAGACCGGGATACGGATTTAATCAAGTCCGAGTGACTTGAAATGTGCTAAAGAGGTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAATTTACGGATTCAGAGAAAATTAGTTTCTTGGATTCTGGCAAGTCGTTTTTTTTATTCCGTCAATTGTCTGAAGGCAAACTTACCTGGAACTTCTGCCGAGCTTACTTTTAGAACTAAAAGAGTAAGCTCGGCAGAAGTAATYAGACTCTTTGATTCCCATAAAACTGGTCCCGCCCACTGAAAGACCGGGATACGGATTTAATCAAGTCCGAGTGACTTGAAATGTGCTAAAGAGGTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38703</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1080890</contig_pos>
        <strand>+</strand>
        <context>AGAAGTAATY[A/C]GACTCTTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGCCGAGCTTACTTTTAGAACTAAAAGAGTAAGCTCGGCAGAAGTAATC</left_flank>
        <right_flank>GACTCTTTGATTCCCATAAAACTGGTCCCGCCCACTGAAAGACCGGGATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAATTGTAAGTCTACAACTCTTGTTCCGGATGGACTAGAAAAGAAGCGTCCGTCTCAATAAGCTCATTAAAGTTTTGGAGTTGTCACTTAAAATGATAAGAACTGCAACACGAATAAGAGCATGATAATTGATGATCAAATCTGAAACATGAAGTTTCAGACAGAAAAAAGTGGTCACACTGGGAGAATAGATGTTTCATTAGGCAGTTTAACAAAATATCGTATTTCAGGATTAGATCTTTGATATTTTGAAATTCTGAGATCCTGAAACGTTGAGATTAGGTTTCGACATTTTCAGATCGTAAAATTCCTCGAGCCAATGAGACTAACTTTCGGAGGTTTCTGTGCTTTTGAAATTTACGGATTCAGAGAAAATTAGTTTCTTGGATTCTGGCAAGTCGTTTTTTTTATTCCGTCAATTGTCTGAAGGCAAACTTACCTGGAACTTCTGCCGAGCTTACTTTTAGAACTAAAAGAGTAAGCTCGGCAGAAGTAATCAGACTCTTTGATTCCCATAAAACTGGTCCCGCCCACTGAAAGACCGGGATACGGATTTAATCAAGTCCGAGTGACTTGAAATGTGCTAAAGAGGTCAAAAAATGTCTTTATGGAGTTTTAGATTAATCAAACCTGGTACTAGACCAAAACCAAGAAATTCCAGGAAATTCAATTTCAATTACTAGTAAGAAGATAAAATGTATTCTGGTCCAATACACGAAAATTCCTGAAAAACAGCATGGACAACAACGGAGACAGAAATAAAAATGGAATGGAAGTACACATACACACACTATGTTTTCAATTATAACCCTTTACTGACGGTGACAATTATTTCCAATTTCCTTAGCAGTGAAGAACAAGGAGAAATTTCTGTCGGCAACACTTTTTTTTCTCCTGTGCTGCTACCAACTTCTTACGTGATTTTGTTTGGTTTAAAGAAGGGACAGGAAGGACCTTCTTTTCCAGAGCTGGTGGTAAAAGGAAGAAAACGGAAGAGTC</canonical>
            <polymorphic>TGAATTGTAAGTCTACAACTCTTGTTCCGGATGGACTAGAAAAGAAGCGTCCGTCTCAATAAGCTCATTAAAGTTTTGGAGTTGTCACTTAAAATGATAAGAACTGCAACACGAATAAGAGCATGATAATTGATGATCAAATCTGAAACATGAAGTTTCAGACAGAAAAAAGTGGTCACACTGGGAGAATAGATGTTTCATTAGGCAGTTTAACAAAATATCGTATTTCAGGATTAGATCTTTGATATTTTGAAATTCTGAGATCCTGAAACGTTGAGATTAGGTTTCGACATTTTCAGATCGTAAAATTCCTCGAGCCAATGAGACTAACTTTCGGAGGTTTCTGTGCTTTTGAAATTTACGGATTCAGAGAAAATTAGTTTCTTGGATTCTGGCAAGTCGTTTTTTTTATTCCGTCAATTGTCTGAAGGCAAACTTACCTGGAACTTCTGCCGAGCTTACTTTTAGAACTAAAAGAGTAAGCTCGGCAGAAGTAATCMGACTCTTTGATTCCCATAAAACTGGTCCCGCCCACTGAAAGACCGGGATACGGATTTAATCAAGTCCGAGTGACTTGAAATGTGCTAAAGAGGTCAAAAAATGTCTTTATGGAGTTTTAGATTAATCAAACCTGGTACTAGACCAAAACCAAGAAATTCCAGGAAATTCAATTTCAATTACTAGTAAGAAGATAAAATGTATTCTGGTCCAATACACGAAAATTCCTGAAAAACAGCATGGACAACAACGGAGACAGAAATAAAAATGGAATGGAAGTACACATACACACACTATGTTTTCAATTATAACCCTTTACTGACGGTGACAATTATTTCCAATTTCCTTAGCAGTGAAGAACAAGGAGAAATTTCTGTCGGCAACACTTTTTTTTCTCCTGTGCTGCTACCAACTTCTTACGTGATTTTGTTTGGTTTAAAGAAGGGACAGGAAGGACCTTCTTTTCCAGAGCTGGTGGTAAAAGGAAGAAAACGGAAGAGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTTACGGATTCAGAGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGACCTCTTTAGCACATT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAATTTACGGATTCAGAGAAAATTAGTTTCTTGGATTCTGGCAAGTCGTTTTTTTTATTCCGTCAATTGTCTGAAGGCAAACTTACCTGGAACTTCTGCCGAGCTTACTTTTAGAACTAAAAGAGTAAGCTCGGCAGAAGTAATCAGACTCTTTGATTCCCATAAAACTGGTCCCGCCCACTGAAAGACCGGGATACGGATTTAATCAAGTCCGAGTGACTTGAAATGTGCTAAAGAGGTCAAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAATTTACGGATTCAGAGAAAATTAGTTTCTTGGATTCTGGCAAGTCGTTTTTTTTATTCCGTCAATTGTCTGAAGGCAAACTTACCTGGAACTTCTGCCGAGCTTACTTTTAGAACTAAAAGAGTAAGCTCGGCAGAAGTAATCMGACTCTTTGATTCCCATAAAACTGGTCCCGCCCACTGAAAGACCGGGATACGGATTTAATCAAGTCCGAGTGACTTGAAATGTGCTAAAGAGGTCAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38704</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1081275</contig_pos>
        <strand>+</strand>
        <context>TCGGCAACAC[C/T]TTTTTTTCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCAATTTCCTTAGCAGTGAAGAACAAGGAGAAATTTCTGTCGGCAACAC</left_flank>
        <right_flank>TTTTTTTCTCCTGTGCTGCTACCAACTTCTTACGTGATTTTGTTTGGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGATTCTGGCAAGTCGTTTTTTTTATTCCGTCAATTGTCTGAAGGCAAACTTACCTGGAACTTCTGCCGAGCTTACTTTTAGAACTAAAAGAGTAAGCTCGGCAGAAGTAATCAGACTCTTTGATTCCCATAAAACTGGTCCCGCCCACTGAAAGACCGGGATACGGATTTAATCAAGTCCGAGTGACTTGAAATGTGCTAAAGAGGTCAAAAAATGTCTTTATGGAGTTTTAGATTAATCAAACCTGGTACTAGACCAAAACCAAGAAATTCCAGGAAATTCAATTTCAATTACTAGTAAGAAGATAAAATGTATTCTGGTCCAATACACGAAAATTCCTGAAAAACAGCATGGACAACAACGGAGACAGAAATAAAAATGGAATGGAAGTACACATACACACACTATGTTTTCAATTATAACCCTTTACTGACGGTGACAATTATTTCCAATTTCCTTAGCAGTGAAGAACAAGGAGAAATTTCTGTCGGCAACACTTTTTTTTCTCCTGTGCTGCTACCAACTTCTTACGTGATTTTGTTTGGTTTAAAGAAGGGACAGGAAGGACCTTCTTTTCCAGAGCTGGTGGTAAAAGGAAGAAAACGGAAGAGTCTGCTCCTTACAAGTTTCCTTGTTTGGGACCCAGATGACGAACCCTCGACACATTCATGACAATGGAAAGAAGGGACTACTGACAACTGAAAAAAGACGGGTTGAATACATCCGTAAATAAGTAATATACCGATGAGCACCCCAAAGGCTTACAGAGAAAAGAAAAATGTGGCGACAAGGGAAACGGGTAAAAACAGAACAAAACAGAACAGAGAAGAATGAATAATTTCAGACCGGAAGGCCAAGGTGATCAGAAAAAAAATGGAAGTGGGTGGTGGGTGATGAGAACAGGGAGTGAAAAAACAAGAACAATGGTACTGCTACTGCAAAGAGTCTGATTTTGACAGCTCGTGACACCTCGTTGTTTGAAAAGAAATAGTAATGCC</canonical>
            <polymorphic>TGGATTCTGGCAAGTCGTTTTTTTTATTCCGTCAATTGTCTGAAGGCAAACTTACCTGGAACTTCTGCCGAGCTTACTTTTAGAACTAAAAGAGTAAGCTCGGCAGAAGTAATCAGACTCTTTGATTCCCATAAAACTGGTCCCGCCCACTGAAAGACCGGGATACGGATTTAATCAAGTCCGAGTGACTTGAAATGTGCTAAAGAGGTCAAAAAATGTCTTTATGGAGTTTTAGATTAATCAAACCTGGTACTAGACCAAAACCAAGAAATTCCAGGAAATTCAATTTCAATTACTAGTAAGAAGATAAAATGTATTCTGGTCCAATACACGAAAATTCCTGAAAAACAGCATGGACAACAACGGAGACAGAAATAAAAATGGAATGGAAGTACACATACACACACTATGTTTTCAATTATAACCCTTTACTGACGGTGACAATTATTTCCAATTTCCTTAGCAGTGAAGAACAAGGAGAAATTTCTGTCGGCAACACYTTTTTTTCTCCTGTGCTGCTACCAACTTCTTACGTGATTTTGTTTGGTTTAAAGAAGGGACAGGAAGGACCTTCTTTTCCAGAGCTGGTGGTAAAAGGAAGAAAACGGAAGAGTCTGCTCCTTACAAGTTTCCTTGTTTGGGACCCAGATGACGAACCCTCGACACATTCATGACAATGGAAAGAAGGGACTACTGACAACTGAAAAAAGACGGGTTGAATACATCCGTAAATAAGTAATATACCGATGAGCACCCCAAAGGCTTACAGAGAAAAGAAAAATGTGGCGACAAGGGAAACGGGTAAAAACAGAACAAAACAGAACAGAGAAGAATGAATAATTTCAGACCGGAAGGCCAAGGTGATCAGAAAAAAAATGGAAGTGGGTGGTGGGTGATGAGAACAGGGAGTGAAAAAACAAGAACAATGGTACTGCTACTGCAAAGAGTCTGATTTTGACAGCTCGTGACACCTCGTTGTTTGAAAAGAAATAGTAATGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATGGAAGTACACATACACACA</pcr_primer_p1>
		<pcr_primer_p2>AAACTTGTAAGGAGCAGACTCTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAATGGAAGTACACATACACACACTATGTTTTCAATTATAACCCTTTACTGACGGTGACAATTATTTCCAATTTCCTTAGCAGTGAAGAACAAGGAGAAATTTCTGTCGGCAACACTTTTTTTTCTCCTGTGCTGCTACCAACTTCTTACGTGATTTTGTTTGGTTTAAAGAAGGGACAGGAAGGACCTTCTTTTCCAGAGCTGGTGGTAAAAGGAAGAAAACGGAAGAGTCTGCTCCTTACAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAATGGAAGTACACATACACACACTATGTTTTCAATTATAACCCTTTACTGACGGTGACAATTATTTCCAATTTCCTTAGCAGTGAAGAACAAGGAGAAATTTCTGTCGGCAACACYTTTTTTTCTCCTGTGCTGCTACCAACTTCTTACGTGATTTTGTTTGGTTTAAAGAAGGGACAGGAAGGACCTTCTTTTCCAGAGCTGGTGGTAAAAGGAAGAAAACGGAAGAGTCTGCTCCTTACAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38705</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1081313</contig_pos>
        <strand></strand>
        <context>TCTTACGTGA[T/C]TTTGTTTGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGTCGGCAACACTTTTTTTTCTCCTGTGCTGCTACCAACTTCTTACGTGA</left_flank>
        <right_flank>TTTGTTTGGTTTAAAGAAGGGACAGGAAGGACCTTCTTTTCCAGAGCTGG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGAAGGCAAACTTACCTGGAACTTCTGCCGAGCTTACTTTTAGAACTAAAAGAGTAAGCTCGGCAGAAGTAATCAGACTCTTTGATTCCCATAAAACTGGTCCCGCCCACTGAAAGACCGGGATACGGATTTAATCAAGTCCGAGTGACTTGAAATGTGCTAAAGAGGTCAAAAAATGTCTTTATGGAGTTTTAGATTAATCAAACCTGGTACTAGACCAAAACCAAGAAATTCCAGGAAATTCAATTTCAATTACTAGTAAGAAGATAAAATGTATTCTGGTCCAATACACGAAAATTCCTGAAAAACAGCATGGACAACAACGGAGACAGAAATAAAAATGGAATGGAAGTACACATACACACACTATGTTTTCAATTATAACCCTTTACTGACGGTGACAATTATTTCCAATTTCCTTAGCAGTGAAGAACAAGGAGAAATTTCTGTCGGCAACACTTTTTTTTCTCCTGTGCTGCTACCAACTTCTTACGTGATTTTGTTTGGTTTAAAGAAGGGACAGGAAGGACCTTCTTTTCCAGAGCTGGTGGTAAAAGGAAGAAAACGGAAGAGTCTGCTCCTTACAAGTTTCCTTGTTTGGGACCCAGATGACGAACCCTCGACACATTCATGACAATGGAAAGAAGGGACTACTGACAACTGAAAAAAGACGGGTTGAATACATCCGTAAATAAGTAATATACCGATGAGCACCCCAAAGGCTTACAGAGAAAAGAAAAATGTGGCGACAAGGGAAACGGGTAAAAACAGAACAAAACAGAACAGAGAAGAATGAATAATTTCAGACCGGAAGGCCAAGGTGATCAGAAAAAAAATGGAAGTGGGTGGTGGGTGATGAGAACAGGGAGTGAAAAAACAAGAACAATGGTACTGCTACTGCAAAGAGTCTGATTTTGACAGCTCGTGACACCTCGTTGTTTGAAAAGAAATAGTAATGCCTCTTCTCCTTCAAACTACAGAGAGTTCAAGAGCTTTTC</canonical>
            <polymorphic>TCTGAAGGCAAACTTACCTGGAACTTCTGCCGAGCTTACTTTTAGAACTAAAAGAGTAAGCTCGGCAGAAGTAATCAGACTCTTTGATTCCCATAAAACTGGTCCCGCCCACTGAAAGACCGGGATACGGATTTAATCAAGTCCGAGTGACTTGAAATGTGCTAAAGAGGTCAAAAAATGTCTTTATGGAGTTTTAGATTAATCAAACCTGGTACTAGACCAAAACCAAGAAATTCCAGGAAATTCAATTTCAATTACTAGTAAGAAGATAAAATGTATTCTGGTCCAATACACGAAAATTCCTGAAAAACAGCATGGACAACAACGGAGACAGAAATAAAAATGGAATGGAAGTACACATACACACACTATGTTTTCAATTATAACCCTTTACTGACGGTGACAATTATTTCCAATTTCCTTAGCAGTGAAGAACAAGGAGAAATTTCTGTCGGCAACACTTTTTTTTCTCCTGTGCTGCTACCAACTTCTTACGTGAYTTTGTTTGGTTTAAAGAAGGGACAGGAAGGACCTTCTTTTCCAGAGCTGGTGGTAAAAGGAAGAAAACGGAAGAGTCTGCTCCTTACAAGTTTCCTTGTTTGGGACCCAGATGACGAACCCTCGACACATTCATGACAATGGAAAGAAGGGACTACTGACAACTGAAAAAAGACGGGTTGAATACATCCGTAAATAAGTAATATACCGATGAGCACCCCAAAGGCTTACAGAGAAAAGAAAAATGTGGCGACAAGGGAAACGGGTAAAAACAGAACAAAACAGAACAGAGAAGAATGAATAATTTCAGACCGGAAGGCCAAGGTGATCAGAAAAAAAATGGAAGTGGGTGGTGGGTGATGAGAACAGGGAGTGAAAAAACAAGAACAATGGTACTGCTACTGCAAAGAGTCTGATTTTGACAGCTCGTGACACCTCGTTGTTTGAAAAGAAATAGTAATGCCTCTTCTCCTTCAAACTACAGAGAGTTCAAGAGCTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATGGAAGTACACATACACACA</pcr_primer_p1>
		<pcr_primer_p2>AAACTTGTAAGGAGCAGACTCTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAATGGAAGTACACATACACACACTATGTTTTCAATTATAACCCTTTACTGACGGTGACAATTATTTCCAATTTCCTTAGCAGTGAAGAACAAGGAGAAATTTCTGTCGGCAACACTTTTTTTTCTCCTGTGCTGCTACCAACTTCTTACGTGATTTTGTTTGGTTTAAAGAAGGGACAGGAAGGACCTTCTTTTCCAGAGCTGGTGGTAAAAGGAAGAAAACGGAAGAGTCTGCTCCTTACAAGTTT</canonical_amplicon>
		<polymorphic_amplicon>GAATGGAAGTACACATACACACACTATGTTTTCAATTATAACCCTTTACTGACGGTGACAATTATTTCCAATTTCCTTAGCAGTGAAGAACAAGGAGAAATTTCTGTCGGCAACACTTTTTTTTCTCCTGTGCTGCTACCAACTTCTTACGTGAYTTTGTTTGGTTTAAAGAAGGGACAGGAAGGACCTTCTTTTCCAGAGCTGGTGGTAAAAGGAAGAAAACGGAAGAGTCTGCTCCTTACAAGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38706</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1081380</contig_pos>
        <strand></strand>
        <context>AAGGAAGAAA[A/T]CGGAAGAGTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGGGACAGGAAGGACCTTCTTTTCCAGAGCTGGTGGTAAAAGGAAGAAA</left_flank>
        <right_flank>CGGAAGAGTCTGCTCCTTACAAGTTTCCTTGTTTGGGACCCAGATGACGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGTAATCAGACTCTTTGATTCCCATAAAACTGGTCCCGCCCACTGAAAGACCGGGATACGGATTTAATCAAGTCCGAGTGACTTGAAATGTGCTAAAGAGGTCAAAAAATGTCTTTATGGAGTTTTAGATTAATCAAACCTGGTACTAGACCAAAACCAAGAAATTCCAGGAAATTCAATTTCAATTACTAGTAAGAAGATAAAATGTATTCTGGTCCAATACACGAAAATTCCTGAAAAACAGCATGGACAACAACGGAGACAGAAATAAAAATGGAATGGAAGTACACATACACACACTATGTTTTCAATTATAACCCTTTACTGACGGTGACAATTATTTCCAATTTCCTTAGCAGTGAAGAACAAGGAGAAATTTCTGTCGGCAACACTTTTTTTTCTCCTGTGCTGCTACCAACTTCTTACGTGATTTTGTTTGGTTTAAAGAAGGGACAGGAAGGACCTTCTTTTCCAGAGCTGGTGGTAAAAGGAAGAAAACGGAAGAGTCTGCTCCTTACAAGTTTCCTTGTTTGGGACCCAGATGACGAACCCTCGACACATTCATGACAATGGAAAGAAGGGACTACTGACAACTGAAAAAAGACGGGTTGAATACATCCGTAAATAAGTAATATACCGATGAGCACCCCAAAGGCTTACAGAGAAAAGAAAAATGTGGCGACAAGGGAAACGGGTAAAAACAGAACAAAACAGAACAGAGAAGAATGAATAATTTCAGACCGGAAGGCCAAGGTGATCAGAAAAAAAATGGAAGTGGGTGGTGGGTGATGAGAACAGGGAGTGAAAAAACAAGAACAATGGTACTGCTACTGCAAAGAGTCTGATTTTGACAGCTCGTGACACCTCGTTGTTTGAAAAGAAATAGTAATGCCTCTTCTCCTTCAAACTACAGAGAGTTCAAGAGCTTTTCAGAAATGGAGAATGATGCGTGGGGCGAGAGCACTTAAAAATGAGGTTTTCAGGAGGGACTTAGGGGA</canonical>
            <polymorphic>GAAGTAATCAGACTCTTTGATTCCCATAAAACTGGTCCCGCCCACTGAAAGACCGGGATACGGATTTAATCAAGTCCGAGTGACTTGAAATGTGCTAAAGAGGTCAAAAAATGTCTTTATGGAGTTTTAGATTAATCAAACCTGGTACTAGACCAAAACCAAGAAATTCCAGGAAATTCAATTTCAATTACTAGTAAGAAGATAAAATGTATTCTGGTCCAATACACGAAAATTCCTGAAAAACAGCATGGACAACAACGGAGACAGAAATAAAAATGGAATGGAAGTACACATACACACACTATGTTTTCAATTATAACCCTTTACTGACGGTGACAATTATTTCCAATTTCCTTAGCAGTGAAGAACAAGGAGAAATTTCTGTCGGCAACACTTTTTTTTCTCCTGTGCTGCTACCAACTTCTTACGTGATTTTGTTTGGTTTAAAGAAGGGACAGGAAGGACCTTCTTTTCCAGAGCTGGTGGTAAAAGGAAGAAAWCGGAAGAGTCTGCTCCTTACAAGTTTCCTTGTTTGGGACCCAGATGACGAACCCTCGACACATTCATGACAATGGAAAGAAGGGACTACTGACAACTGAAAAAAGACGGGTTGAATACATCCGTAAATAAGTAATATACCGATGAGCACCCCAAAGGCTTACAGAGAAAAGAAAAATGTGGCGACAAGGGAAACGGGTAAAAACAGAACAAAACAGAACAGAGAAGAATGAATAATTTCAGACCGGAAGGCCAAGGTGATCAGAAAAAAAATGGAAGTGGGTGGTGGGTGATGAGAACAGGGAGTGAAAAAACAAGAACAATGGTACTGCTACTGCAAAGAGTCTGATTTTGACAGCTCGTGACACCTCGTTGTTTGAAAAGAAATAGTAATGCCTCTTCTCCTTCAAACTACAGAGAGTTCAAGAGCTTTTCAGAAATGGAGAATGATGCGTGGGGCGAGAGCACTTAAAAATGAGGTTTTCAGGAGGGACTTAGGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCCTTAGCAGTGAAGAACA</pcr_primer_p1>
		<pcr_primer_p2>AGTTGTCAGTAGTCCCTTCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTTCCTTAGCAGTGAAGAACAAGGAGAAATTTCTGTCGGCAACACTTTTTTTTCTCCTGTGCTGCTACCAACTTCTTACGTGATTTTGTTTGGTTTAAAGAAGGGACAGGAAGGACCTTCTTTTCCAGAGCTGGTGGTAAAAGGAAGAAAACGGAAGAGTCTGCTCCTTACAAGTTTCCTTGTTTGGGACCCAGATGACGAACCCTCGACACATTCATGACAATGGAAAGAAGGGACTACTGACAACT</canonical_amplicon>
		<polymorphic_amplicon>ATTTCCTTAGCAGTGAAGAACAAGGAGAAATTTCTGTCGGCAACACTTTTTTTTCTCCTGTGCTGCTACCAACTTCTTACGTGATTTTGTTTGGTTTAAAGAAGGGACAGGAAGGACCTTCTTTTCCAGAGCTGGTGGTAAAAGGAAGAAAWCGGAAGAGTCTGCTCCTTACAAGTTTCCTTGTTTGGGACCCAGATGACGAACCCTCGACACATTCATGACAATGGAAAGAAGGGACTACTGACAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38707</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1095337</contig_pos>
        <strand>+</strand>
        <context>GCTTTTCTTC[C/T]AAAMAAACTT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGCCATTGTGTCACCATCTGCTGCTTTGAGCTGAAAAACGCTTTTCTTC</left_flank>
        <right_flank>AAAAAAACTTTTCTTAGGTCTATAATACCTCCGCCGCCTTCGAGTCCTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAATCATTTGCTTCTGAAAATAATCAAATTCAAAATAATCAAACAAAAAAGATCTATCTTACCAACAAAATGGTTCACAGCGGCATCGTACTGCCCGATATACTCTAGATGTAAACCCCATTCATGCTCGAGATCGACCACTTTCTCAGGATATGCGAATCGAGCGAGCTGGAAAAATTAGATTGTGTTTCTCGAAATTAAACAAGAAAAAATAATTATTTACTTGTATAGCTTTTCCGTATGCATCCCCTTTTTTATAGTTGTCAACGGCATTGTCAAAGTCTTTCAGCTTCTCGTAAACTTCTCCAGCCTTATCAAACAGTTGTGCTTTTCCGAGAGCCTCCGCCACTTGTCTCAAAACATTTGCATCTTGAGAGAGCACACTATCATTCATCACAGCATTCAGTGCAGATAAGGGTTTGTTAGACCTCATGTACAAGTCTACAGCTGCCATTGTGTCACCATCTGCTGCTTTGAGCTGAAAAACGCTTTTCTTCAAAAAAAACTTTTCTTAGGTCTATAATACCTCCGCCGCCTTCGAGTCCTGTCCTGTTTCGCTGAGAGCTCTCATATAATTATTTTTGAGACCATCCAAGTTTTGATAGTTGATCACTTTTGCTAGTTCCATTGCTTCATCCCATTTATGAAGAGATGTGTACATCCCAATTGCAGCATCCGCATCGTTCTGTTCCAGAAATATTCTCTCAGCGTCTTTGAATTTGCGTCCAAGGATTGACATCATAGCACGAACCTTGTAATAGTGAGTTCCATCGCCACCGATAGTGATGGCAGCTTCGTCAGCAATCTCTATTATATCCTGAAATTTGGAATTTGTCGAAATAGTGAAGGTTAGTGCTTACATGAAGTTTCTTCGCCTTTGCAATGTTTCCTATTGCCGCGTAGCACCGTTGAGCTACAAAAAGGTTTCCATGCTCTAGTGCCATCTCAGCTACTCTAGTCCACATTGCGTAAGCATCTGAAGATCCTGTATTGGATTC</canonical>
            <polymorphic>TCAAATCATTTGCTTCTGAAAATAATCAAATTCAAAATAATCAAACAAAAAAGATCTATCTTACCAACAAAATGGTTCACAGCGGCATCGTACTGCCCGATATACTCTAGATGTAAACCCCATTCATGCTCGAGATCGACCACTTTCTCAGGATATGCGAATCGAGCGAGCTGGAAAAATTAGATTGTGTTTCTCGAAATTAAACAAGAAAAAATAATTATTTACTTGTATAGCTTTTCCGTATGCATCCCCTTTTTTATAGTTGTCAACGGCATTGTCAAAGTCTTTCAGCTTCTCGTAAACTTCTCCAGCCTTATCAAACAGTTGTGCTTTTCCGAGAGCCTCCGCCACTTGTCTCAAAACATTTGCATCTTGAGAGAGCACACTATCATTCATCACAGCATTCAGTGCAGATAAGGGTTTGTTAGACCTCATGTACAAGTCTACAGCTGCCATTGTGTCACCATCTGCTGCTTTGAGCTGAAAAACGCTTTTCTTCYAAAAAAACTTTTCTTAGGTCTATAATACCTCCGCCGCCTTCGAGTCCTGTCCTGTTTCGCTGAGAGCTCTCATATAATTATTTTTGAGACCATCCAAGTTTTGATAGTTGATCACTTTTGCTAGTTCCATTGCTTCATCCCATTTATGAAGAGATGTGTACATCCCAATTGCAGCATCCGCATCGTTCTGTTCCAGAAATATTCTCTCAGCGTCTTTGAATTTGCGTCCAAGGATTGACATCATAGCACGAACCTTGTAATAGTGAGTTCCATCGCCACCGATAGTGATGGCAGCTTCGTCAGCAATCTCTATTATATCCTGAAATTTGGAATTTGTCGAAATAGTGAAGGTTAGTGCTTACATGAAGTTTCTTCGCCTTTGCAATGTTTCCTATTGCCGCGTAGCACCGTTGAGCTACAAAAAGGTTTCCATGCTCTAGTGCCATCTCAGCTACTCTAGTCCACATTGCGTAAGCATCTGAAGATCCTGTATTGGATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAGAGCACACTATCATTCATC</pcr_primer_p1>
		<pcr_primer_p2>AGCAAAAGTGATCAACTATCAAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAGAGAGCACACTATCATTCATCACAGCATTCAGTGCAGATAAGGGTTTGTTAGACCTCATGTACAAGTCTACAGCTGCCATTGTGTCACCATCTGCTGCTTTGAGCTGAAAAACGCTTTTCTTCAAAAAAAACTTTTCTTAGGTCTATAATACCTCCGCCGCCTTCGAGTCCTGTCCTGTTTCGCTGAGAGCTCTCATATAATTATTTTTGAGACCATCCAAGTTTTGATAGTTGATCACTTTTGCT</canonical_amplicon>
		<polymorphic_amplicon>GAGAGAGCACACTATCATTCATCACAGCATTCAGTGCAGATAAGGGTTTGTTAGACCTCATGTACAAGTCTACAGCTGCCATTGTGTCACCATCTGCTGCTTTGAGCTGAAAAACGCTTTTCTTCYAAAAAAACTTTTCTTAGGTCTATAATACCTCCGCCGCCTTCGAGTCCTGTCCTGTTTCGCTGAGAGCTCTCATATAATTATTTTTGAGACCATCCAAGTTTTGATAGTTGATCACTTTTGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38708</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1097086</contig_pos>
        <strand>+</strand>
        <context>AAAGGAGCTC[C/G]TTCGTCCCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCAGCCTAGGGCACCTATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTC</left_flank>
        <right_flank>TTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGCCATTCAAGCTCAGAGAATCTTTGGGTTTCGGTATCAGCAATGATGATGGTGGATGAGGTGTATCCGATGACAAAACGGTCTTTGCCCATGATTTTCAGCTCATCGATAGCTAGTCCTTTATTGGAAATCAAATTTGTTCTCGACTCATTTGTTACATCACGAAGAATCACATGGGATGGGGCGACGTAGGTGGTTTCAAATCGAGATTTCAGCATACCACGACGTAGACAGCAATCAACAGCAAAGACTCCTCCACAGACAGTGCCCTGTAATCAGAGGAATTGATCTCTTGTGTTTCTTGAAAAATTAAAGCTCAGAAAATTTTTGGCAACGTTTCATTTTTTGAAGTTTTCAGTTACCTTGTGAATTGGGAAAATTGCAGATTTTCAAAAACTCTCTTAGTGAGATGCAACTAACCGCGTAAATAGTGCTGCCATCTTGTTTCCAGCCTAGGGCACCTATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAATCGACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACGACTCCGTTCTCTGTGTAGGACAGTACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAGATTATATGGAGGCCATTGGAGTGTGCAAATCTTGGATTGAGTTTTACTGCTGAAGTTGTACAGAATGATGGATCCATCTTGATGTGCAGAGACAAAGGATGTCTTTTTTGGGCTGAAAAATAGTTTTTCCGGGGCATTGAGTAT</canonical>
            <polymorphic>TTTGCCATTCAAGCTCAGAGAATCTTTGGGTTTCGGTATCAGCAATGATGATGGTGGATGAGGTGTATCCGATGACAAAACGGTCTTTGCCCATGATTTTCAGCTCATCGATAGCTAGTCCTTTATTGGAAATCAAATTTGTTCTCGACTCATTTGTTACATCACGAAGAATCACATGGGATGGGGCGACGTAGGTGGTTTCAAATCGAGATTTCAGCATACCACGACGTAGACAGCAATCAACAGCAAAGACTCCTCCACAGACAGTGCCCTGTAATCAGAGGAATTGATCTCTTGTGTTTCTTGAAAAATTAAAGCTCAGAAAATTTTTGGCAACGTTTCATTTTTTGAAGTTTTCAGTTACCTTGTGAATTGGGAAAATTGCAGATTTTCAAAAACTCTCTTAGTGAGATGCAACTAACCGCGTAAATAGTGCTGCCATCTTGTTTCCAGCCTAGGGCACCTATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCSTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAATCGACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACGACTCCGTTCTCTGTGTAGGACAGTACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAGATTATATGGAGGCCATTGGAGTGTGCAAATCTTGGATTGAGTTTTACTGCTGAAGTTGTACAGAATGATGGATCCATCTTGATGTGCAGAGACAAAGGATGTCTTTTTTGGGCTGAAAAATAGTTTTTCCGGGGCATTGAGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACTAACCGCGTAAATAGTG</pcr_primer_p1>
		<pcr_primer_p2>AAGGGATTATTCCTGGTGAC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CAACTAACCGCGTAAATAGTGCTGCCATCTTGTTTCCAGCCTAGGGCACCTATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTT</canonical_amplicon>
		<polymorphic_amplicon>CAACTAACCGCGTAAATAGTGCTGCCATCTTGTTTCCAGCCTAGGGCACCTATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCSTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38709</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1097133</contig_pos>
        <strand>+</strand>
        <context>CAGCCGGAGC[C/G]TGAAAATCGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGC</left_flank>
        <right_flank>TGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGATGGTGGATGAGGTGTATCCGATGACAAAACGGTCTTTGCCCATGATTTTCAGCTCATCGATAGCTAGTCCTTTATTGGAAATCAAATTTGTTCTCGACTCATTTGTTACATCACGAAGAATCACATGGGATGGGGCGACGTAGGTGGTTTCAAATCGAGATTTCAGCATACCACGACGTAGACAGCAATCAACAGCAAAGACTCCTCCACAGACAGTGCCCTGTAATCAGAGGAATTGATCTCTTGTGTTTCTTGAAAAATTAAAGCTCAGAAAATTTTTGGCAACGTTTCATTTTTTGAAGTTTTCAGTTACCTTGTGAATTGGGAAAATTGCAGATTTTCAAAAACTCTCTTAGTGAGATGCAACTAACCGCGTAAATAGTGCTGCCATCTTGTTTCCAGCCTAGGGCACCTATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAATCGACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACGACTCCGTTCTCTGTGTAGGACAGTACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAGATTATATGGAGGCCATTGGAGTGTGCAAATCTTGGATTGAGTTTTACTGCTGAAGTTGTACAGAATGATGGATCCATCTTGATGTGCAGAGACAAAGGATGTCTTTTTTGGGCTGAAAAATAGTTTTTCCGGGGCATTGAGTATAATTCCGCCTACTGTGTCTGAATGCTGACGACTGTTTCGTCAGTCTT</canonical>
            <polymorphic>ATGATGGTGGATGAGGTGTATCCGATGACAAAACGGTCTTTGCCCATGATTTTCAGCTCATCGATAGCTAGTCCTTTATTGGAAATCAAATTTGTTCTCGACTCATTTGTTACATCACGAAGAATCACATGGGATGGGGCGACGTAGGTGGTTTCAAATCGAGATTTCAGCATACCACGACGTAGACAGCAATCAACAGCAAAGACTCCTCCACAGACAGTGCCCTGTAATCAGAGGAATTGATCTCTTGTGTTTCTTGAAAAATTAAAGCTCAGAAAATTTTTGGCAACGTTTCATTTTTTGAAGTTTTCAGTTACCTTGTGAATTGGGAAAATTGCAGATTTTCAAAAACTCTCTTAGTGAGATGCAACTAACCGCGTAAATAGTGCTGCCATCTTGTTTCCAGCCTAGGGCACCTATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCSTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGACCACATTCTGCGCAGTAGGGTCACACACAATCGACGAGAACTCCTTCTCCGGCTGGTCATTGTAGTCGAATTGCTGTTGGACGACTCCGTTCTCTGTGTAGGACAGTACACGTCTGTCTGACGTGGCCACAACGAGACCGTGGTTAGTGAAAACGAGATTATATGGAGGCCATTGGAGTGTGCAAATCTTGGATTGAGTTTTACTGCTGAAGTTGTACAGAATGATGGATCCATCTTGATGTGCAGAGACAAAGGATGTCTTTTTTGGGCTGAAAAATAGTTTTTCCGGGGCATTGAGTATAATTCCGCCTACTGTGTCTGAATGCTGACGACTGTTTCGTCAGTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>414 384 119 83</canonical_bands>
                <polymorphic_bands>467 414 119</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>203 136 100 86 79 74 62 58 56 43 43 27 16 11 6</canonical_bands>
                <polymorphic_bands>203 136 100 86 79 74 68 58 56 43 43 27 16 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATCGAGTAAGCATTCTGAATTT</pcr_primer_p1>
		<pcr_primer_p2>GTCGTGGCTAGTTATAATAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>TATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCCTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGAC</canonical_amplicon>
		<polymorphic_amplicon>TATCGAGTAAGCATTCTGAATTTCCAAAGGAGCTCCTTCGTCCCATGCACCGCGTCTGGCCGACCAGGAGAACAGCCGGAGCSTGAAAATCGATAATAATTTCTTTAAATACTTGTATTTCGATTAATGGGAAACCTTCCTAGCCTTAAAATGAATCAGAAAATCGCAAAGTCACCAGGAATAATCCCTTTTTCTGAGAAAACAATCTTTTCTCACCTATTATAACTAGCCACGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38710</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1119605</contig_pos>
        <strand>+</strand>
        <context>TTTTAAGAGG[A/G]TCCTGTGGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACAAAATGGTTGGGAGGATGAAGAACGAAATCTGAGAGTTTTTAAGAGG</left_flank>
        <right_flank>TCCTGTGGGAAAACTTTTGGGGAAGAAAAACAAAAAGAAAATCTGAATAA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGCCATATTTGCTAGAAAAAAACTTGTTTTTATTTCCAGAAACTGAAAAAAAGACACTAATGACACACGCCCACAATAATAACAGTTGGTCTAATTTGATGTATTACTTAGTTGTTGGAGCTGGCTCCTGGAAGCCTGGAGCAAAAAAAGAAAACAAAAAACAAGGAAAAAGAAGAAGAAGAAGAAGTTGGAAAAAAAAGACGATGAGAGTAGATGAAGAAGAGGAACCTCGTTTCCTTTTTTCCTTTTTTCTCCGAGAGGCAAAACTAACTCAATTCCCATTTTCCATTCCTAGATTCTTTGGTCCGGAACAATTGGGCAATATTCTTTAAGTGCACCTTTCGAAAAAAATTGGAGGGAATTGAGTTTTTTATTGTTGACGTTGAAGAAGAAGAAGAAGAAGAAGTTTTTTTCCTTCTTCTGGAGCTCCTAAAATTTTGGAAGGACAAACAAAATGGTTGGGAGGATGAAGAACGAAATCTGAGAGTTTTTAAGAGGATCCTGTGGGAAAACTTTTGGGGAAGAAAAACAAAAAGAAAATCTGAATAAACATGAAACTAAAAAGTGAGGTGTTTTAGCTGTGGAAATTTTCGAAACATAGATTAGAAATAATTGAAAAAAAACCAGGTGATGAGTGTGAAGATATTCTGAACAAGTGACGCATCAATTTGCCGGCACTCGCCGGACTTGCTCAATCTCTCACTCATTCATTCCATGACGCTCTGGCGTTTGATGTTTGAAATAGAAAAGAAATTGCATCTGCTACCAACCAGGTTCAAGGATCTCTGGCATTTTTGTCCCAAAAAAAAAAAGAAAAAAGATGCGCCGAAAACATGATTTACATTCCTTTTTTCGAGAATTTCAATGGCTTTTTACTACTACAATTTTCTAGAAGCATGTCAAGCTCTTTTCTGCTTCTTCGCATTGTTTTCTTCCGTCTTTTTTTTTCTTTTCGGAAAGGAAAATTCTTTCTTAGAAGCCCAAAAAAGGAAAACAAAA</canonical>
            <polymorphic>CCGCCATATTTGCTAGAAAAAAACTTGTTTTTATTTCCAGAAACTGAAAAAAAGACACTAATGACACACGCCCACAATAATAACAGTTGGTCTAATTTGATGTATTACTTAGTTGTTGGAGCTGGCTCCTGGAAGCCTGGAGCAAAAAAAGAAAACAAAAAACAAGGAAAAAGAAGAAGAAGAAGAAGTTGGAAAAAAAAGACGATGAGAGTAGATGAAGAAGAGGAACCTCGTTTCCTTTTTTCCTTTTTTCTCCGAGAGGCAAAACTAACTCAATTCCCATTTTCCATTCCTAGATTCTTTGGTCCGGAACAATTGGGCAATATTCTTTAAGTGCACCTTTCGAAAAAAATTGGAGGGAATTGAGTTTTTTATTGTTGACGTTGAAGAAGAAGAAGAAGAAGAAGTTTTTTTCCTTCTTCTGGAGCTCCTAAAATTTTGGAAGGACAAACAAAATGGTTGGGAGGATGAAGAACGAAATCTGAGAGTTTTTAAGAGGRTCCTGTGGGAAAACTTTTGGGGAAGAAAAACAAAAAGAAAATCTGAATAAACATGAAACTAAAAAGTGAGGTGTTTTAGCTGTGGAAATTTTCGAAACATAGATTAGAAATAATTGAAAAAAAACCAGGTGATGAGTGTGAAGATATTCTGAACAAGTGACGCATCAATTTGCCGGCACTCGCCGGACTTGCTCAATCTCTCACTCATTCATTCCATGACGCTCTGGCGTTTGATGTTTGAAATAGAAAAGAAATTGCATCTGCTACCAACCAGGTTCAAGGATCTCTGGCATTTTTGTCCCAAAAAAAAAAAGAAAAAAGATGCGCCGAAAACATGATTTACATTCCTTTTTTCGAGAATTTCAATGGCTTTTTACTACTACAATTTTCTAGAAGCATGTCAAGCTCTTTTCTGCTTCTTCGCATTGTTTTCTTCCGTCTTTTTTTTTCTTTTCGGAAAGGAAAATTCTTTCTTAGAAGCCCAAAAAAGGAAAACAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGATCC</site>
                <isoschizomers>
                    <enzyme>BamHI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>498 283 219</canonical_bands>
                <polymorphic_bands>781 219</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>498 283 219</canonical_bands>
                <polymorphic_bands>781 219</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACAATTGGGCAATATTCTTTA</pcr_primer_p1>
		<pcr_primer_p2>GTTTCATGTTTATTCAGATTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACAATTGGGCAATATTCTTTAAGTGCACCTTTCGAAAAAAATTGGAGGGAATTGAGTTTTTTATTGTTGACGTTGAAGAAGAAGAAGAAGAAGAAGTTTTTTTCCTTCTTCTGGAGCTCCTAAAATTTTGGAAGGACAAACAAAATGGTTGGGAGGATGAAGAACGAAATCTGAGAGTTTTTAAGAGGATCCTGTGGGAAAACTTTTGGGGAAGAAAAACAAAAAGAAAATCTGAATAAACATGAAAC</canonical_amplicon>
		<polymorphic_amplicon>AACAATTGGGCAATATTCTTTAAGTGCACCTTTCGAAAAAAATTGGAGGGAATTGAGTTTTTTATTGTTGACGTTGAAGAAGAAGAAGAAGAAGAAGTTTTTTTCCTTCTTCTGGAGCTCCTAAAATTTTGGAAGGACAAACAAAATGGTTGGGAGGATGAAGAACGAAATCTGAGAGTTTTTAAGAGGRTCCTGTGGGAAAACTTTTGGGGAAGAAAAACAAAAAGAAAATCTGAATAAACATGAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38711</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1120758</contig_pos>
        <strand>+</strand>
        <context>AGGTTGAAAA[A/G]TTCAATACAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGCAACAAAACAATTGAAGAAACAAAAAAAAAAGGAAAAAGGTTGAAAA</left_flank>
        <right_flank>TTCAATACAAGTACAGCAAAGTTTCAAATTTCCAGGGGAAACTTTCTCGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATAAAAATGTCAAAACATTTTTTCTCATTTTCTTTCTTCTCCACAAAACTCATTAACTTTGAAGGATTACTGTAGATTAAATTGCCAACAACAAAGCAAAAAAAAAACAATTTCAGAGTATTAACGTTCTGAGCCATAAGGCTTTACGGTCCCACAATGAGAATGCTCCTTTTTCTGTTGTTGTTTCGTCACACAACACAAAAATCAAAGTTTCTGCGAAAGAACCCAGCGGAAGCGCTAATTCCATGGTCCTCTGCTCCTGGTACTCGGAGAACCAGGAAATGCACGAAAATGGAGCAGAGTGGGAGAAAAACGCCTATGAATAGGAAATGATGAGAGTAGAAACAGAAAAATGAAGCGAGTGCACATTCATTTTCTCGAGATTTGAGAACCATTAATTTTTTTTTGAAACTTTTGGGATTTGACAGAAATCGCAATTCATCAAAAAGAGCAACAAAACAATTGAAGAAACAAAAAAAAAAGGAAAAAGGTTGAAAAATTCAATACAAGTACAGCAAAGTTTCAAATTTCCAGGGGAAACTTTCTCGGAGATTTTCCAGGAAAACGCAAAACTTTGCACAACAGCTGCACATGAACTTTGAGAAGACTGGGGAGAACATGATATTTCCCACTGATTGTGAGTGAGATCGAATTAACGGGCACACGTCATGCAGATAAAGTTTACAACATAGTTAACGCACAATAATTAGAGAGGTTATTTCATTTGCACCCGGAAGTTATTTGGAATCTTTGAATTTTTGTGAGGGTGGCTTTCTTAAAGAAACTGAACTTAAAAGTGTTTAAAAAGTTGTTGGGCTTCATATGGCTTCGGAAATTGTGTTATTTTTTTTCTCTTCGGCTGTATTTTCAATTCCAAGATTCTATATAACTCCTGATGGCGCCTGAAATAACCTTTATCCTGTTTTTAATTACTCACGTTTATTCCAGGCTTTCCGTTCCAGTAATTGGTTCCTACTTTCAACCTCTTTTCGAAGTAGA</canonical>
            <polymorphic>GATAAAAATGTCAAAACATTTTTTCTCATTTTCTTTCTTCTCCACAAAACTCATTAACTTTGAAGGATTACTGTAGATTAAATTGCCAACAACAAAGCAAAAAAAAAACAATTTCAGAGTATTAACGTTCTGAGCCATAAGGCTTTACGGTCCCACAATGAGAATGCTCCTTTTTCTGTTGTTGTTTCGTCACACAACACAAAAATCAAAGTTTCTGCGAAAGAACCCAGCGGAAGCGCTAATTCCATGGTCCTCTGCTCCTGGTACTCGGAGAACCAGGAAATGCACGAAAATGGAGCAGAGTGGGAGAAAAACGCCTATGAATAGGAAATGATGAGAGTAGAAACAGAAAAATGAAGCGAGTGCACATTCATTTTCTCGAGATTTGAGAACCATTAATTTTTTTTTGAAACTTTTGGGATTTGACAGAAATCGCAATTCATCAAAAAGAGCAACAAAACAATTGAAGAAACAAAAAAAAAAGGAAAAAGGTTGAAAARTTCAATACAAGTACAGCAAAGTTTCAAATTTCCAGGGGAAACTTTCTCGGAGATTTTCCAGGAAAACGCAAAACTTTGCACAACAGCTGCACATGAACTTTGAGAAGACTGGGGAGAACATGATATTTCCCACTGATTGTGAGTGAGATCGAATTAACGGGCACACGTCATGCAGATAAAGTTTACAACATAGTTAACGCACAATAATTAGAGAGGTTATTTCATTTGCACCCGGAAGTTATTTGGAATCTTTGAATTTTTGTGAGGGTGGCTTTCTTAAAGAAACTGAACTTAAAAGTGTTTAAAAAGTTGTTGGGCTTCATATGGCTTCGGAAATTGTGTTATTTTTTTTCTCTTCGGCTGTATTTTCAATTCCAAGATTCTATATAACTCCTGATGGCGCCTGAAATAACCTTTATCCTGTTTTTAATTACTCACGTTTATTCCAGGCTTTCCGTTCCAGTAATTGGTTCCTACTTTCAACCTCTTTTCGAAGTAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>498 246 228 28</canonical_bands>
                <polymorphic_bands>526 246 228</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>157 131 125 80 80 58 54 49 39 37 36 36 36 29 28 25</canonical_bands>
                <polymorphic_bands>157 131 125 80 80 65 58 54 49 39 36 36 36 29 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAACTTTTGGGATTTGACAG</pcr_primer_p1>
		<pcr_primer_p2>GTTAATTCGATCTCACTCACAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAACTTTTGGGATTTGACAGAAATCGCAATTCATCAAAAAGAGCAACAAAACAATTGAAGAAACAAAAAAAAAAGGAAAAAGGTTGAAAAATTCAATACAAGTACAGCAAAGTTTCAAATTTCCAGGGGAAACTTTCTCGGAGATTTTCCAGGAAAACGCAAAACTTTGCACAACAGCTGCACATGAACTTTGAGAAGACTGGGGAGAACATGATATTTCCCACTGATTGTGAGTGAGATCGAATTAAC</canonical_amplicon>
		<polymorphic_amplicon>GAAACTTTTGGGATTTGACAGAAATCGCAATTCATCAAAAAGAGCAACAAAACAATTGAAGAAACAAAAAAAAAAGGAAAAAGGTTGAAAARTTCAATACAAGTACAGCAAAGTTTCAAATTTCCAGGGGAAACTTTCTCGGAGATTTTCCAGGAAAACGCAAAACTTTGCACAACAGCTGCACATGAACTTTGAGAAGACTGGGGAGAACATGATATTTCCCACTGATTGTGAGTGAGATCGAATTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38712</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1143965</contig_pos>
        <strand>+</strand>
        <context>CACAGATCMC[A/C]AACCTTACGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTACATATTCAAATTGTCCCATTTTTTTGTGCAGTCACCACAGATCAC</left_flank>
        <right_flank>AACCTTACGGTCCGTGACATGTTTCTCGTGTTCGATGTAACACTGTCCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAATAAAATGAAAAGGATGTTTCTCACCGAAAGCTGAACGAAGCTCAGCTGCTGTCGGGCCAATTTTCTCAGCGCTTCCTCAGCGTTACGATCCACTGGAAAAGCGACACCCTAAAAATTGACACATTTAGCAAAGTAAGAGCTAAAAATGAGCAAGACTCACCTTCAAATGTTGTGGTCCGGCATGAGCGATGGCGGCTCTCTCTTGCTGAGCATTGTGAAGTTCTTTCTCAACTTCACTCATTGGTCCCAGTTCGGTTTTTGCTTTCAGCCATGATTCGAAGGCAGTGAGAGTAAGATCCTGGAAGAAACAAAACGGTTTATAAAAAAATTTAACTTGTATTTCACGGTTTCCAGGTTGAACATTTTAATTTTTAGAATTGTTTTTTTTTTCCAATTTGATTATTTTTTAAAAATTTCCAGTAAGCACATCAACGATTTTGTTTCAATTTACATATTCAAATTGTCCCATTTTTTTGTGCAGTCACCACAGATCACTAACCTTACGGTCCGTGACATGTTTCTCGTGTTCGATGTAACACTGTCCGAACTCGCTTTTGAATGTGGCACATGTGGCCGCCAGAAGCATCTTCTCGCGAACCGGAGCACGATCGTCGACGAATCTGCAACAAAAAACAAGATCGTTAGTTTTCTGTCAAGAAACATGTGCGGTCCATGAAATTTGTAAGAATTCATTCGGGTGTCGTGTCCTTTAAAAATTCGAAACATGTGTGCACATTTTTCAAAAAATTCATTAATCTTGTTTGTTATCGAAATTGAGATCGATTATGATAGAGTTGTTTTTTAGAACATGTTCAGAAAAGCCAGAATTTTGATCAGTCCATTCTAAAATTCCAAATTAGAAAAAGCAAAATAGTCATTTTTCAAGCACCCTAACATGAATTCCAAAACTTACGTTATCAAAACCCATTCAGTGATTGTATTCAAACGGAACAAGATGAAGCATGGCTCATATGCATCCACACATTCCGGTAGACA</canonical>
            <polymorphic>TTAATAAAATGAAAAGGATGTTTCTCACCGAAAGCTGAACGAAGCTCAGCTGCTGTCGGGCCAATTTTCTCAGCGCTTCCTCAGCGTTACGATCCACTGGAAAAGCGACACCCTAAAAATTGACACATTTAGCAAAGTAAGAGCTAAAAATGAGCAAGACTCACCTTCAAATGTTGTGGTCCGGCATGAGCGATGGCGGCTCTCTCTTGCTGAGCATTGTGAAGTTCTTTCTCAACTTCACTCATTGGTCCCAGTTCGGTTTTTGCTTTCAGCCATGATTCGAAGGCAGTGAGAGTAAGATCCTGGAAGAAACAAAACGGTTTATAAAAAAATTTAACTTGTATTTCACGGTTTCCAGGTTGAACATTTTAATTTTTAGAATTGTTTTTTTTTTCCAATTTGATTATTTTTTAAAAATTTCCAGTAAGCACATCAACGATTTTGTTTCAATTTACATATTCAAATTGTCCCATTTTTTTGTGCAGTCACCACAGATCACMAACCTTACGGTCCGTGACATGTTTCTCGTGTTCGATGTAACACTGTCCGAACTCGCTTTTGAATGTGGCACATGTGGCCGCCAGAAGCATCTTCTCGCGAACCGGAGCACGATCGTCGACGAATCTGCAACAAAAAACAAGATCGTTAGTTTTCTGTCAAGAAACATGTGCGGTCCATGAAATTTGTAAGAATTCATTCGGGTGTCGTGTCCTTTAAAAATTCGAAACATGTGTGCACATTTTTCAAAAAATTCATTAATCTTGTTTGTTATCGAAATTGAGATCGATTATGATAGAGTTGTTTTTTAGAACATGTTCAGAAAAGCCAGAATTTTGATCAGTCCATTCTAAAATTCCAAATTAGAAAAAGCAAAATAGTCATTTTTCAAGCACCCTAACATGAATTCCAAAACTTACGTTATCAAAACCCATTCAGTGATTGTATTCAAACGGAACAAGATGAAGCATGGCTCATATGCATCCACACATTCCGGTAGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAACTTGTATTTCACGGTTTC</pcr_primer_p1>
		<pcr_primer_p2>GAGTTCGGACAGTGTTACATC</pcr_primer_p2>
		<pcr_amplicon_size>222</pcr_amplicon_size>
		<canonical_amplicon>TTTAACTTGTATTTCACGGTTTCCAGGTTGAACATTTTAATTTTTAGAATTGTTTTTTTTTTCCAATTTGATTATTTTTTAAAAATTTCCAGTAAGCACATCAACGATTTTGTTTCAATTTACATATTCAAATTGTCCCATTTTTTTGTGCAGTCACCACAGATCACTAACCTTACGGTCCGTGACATGTTTCTCGTGTTCGATGTAACACTGTCCGAACTC</canonical_amplicon>
		<polymorphic_amplicon>TTTAACTTGTATTTCACGGTTTCCAGGTTGAACATTTTAATTTTTAGAATTGTTTTTTTTTTCCAATTTGATTATTTTTTAAAAATTTCCAGTAAGCACATCAACGATTTTGTTTCAATTTACATATTCAAATTGTCCCATTTTTTTGTGCAGTCACCACAGATCACMAACCTTACGGTCCGTGACATGTTTCTCGTGTTCGATGTAACACTGTCCGAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38713</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1144120</contig_pos>
        <strand>+</strand>
        <context>GTTAGTTTTC[C/G]GTCAAGAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAGCACGATCGTCGACGAATCTGCAACAAAAAACAAGATCGTTAGTTTTC</left_flank>
        <right_flank>GTCAAGAAACATGTGCGGTCCATGAAATTTGTAAGAATTCATTCGGGTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGACTCACCTTCAAATGTTGTGGTCCGGCATGAGCGATGGCGGCTCTCTCTTGCTGAGCATTGTGAAGTTCTTTCTCAACTTCACTCATTGGTCCCAGTTCGGTTTTTGCTTTCAGCCATGATTCGAAGGCAGTGAGAGTAAGATCCTGGAAGAAACAAAACGGTTTATAAAAAAATTTAACTTGTATTTCACGGTTTCCAGGTTGAACATTTTAATTTTTAGAATTGTTTTTTTTTTCCAATTTGATTATTTTTTAAAAATTTCCAGTAAGCACATCAACGATTTTGTTTCAATTTACATATTCAAATTGTCCCATTTTTTTGTGCAGTCACCACAGATCACTAACCTTACGGTCCGTGACATGTTTCTCGTGTTCGATGTAACACTGTCCGAACTCGCTTTTGAATGTGGCACATGTGGCCGCCAGAAGCATCTTCTCGCGAACCGGAGCACGATCGTCGACGAATCTGCAACAAAAAACAAGATCGTTAGTTTTCTGTCAAGAAACATGTGCGGTCCATGAAATTTGTAAGAATTCATTCGGGTGTCGTGTCCTTTAAAAATTCGAAACATGTGTGCACATTTTTCAAAAAATTCATTAATCTTGTTTGTTATCGAAATTGAGATCGATTATGATAGAGTTGTTTTTTAGAACATGTTCAGAAAAGCCAGAATTTTGATCAGTCCATTCTAAAATTCCAAATTAGAAAAAGCAAAATAGTCATTTTTCAAGCACCCTAACATGAATTCCAAAACTTACGTTATCAAAACCCATTCAGTGATTGTATTCAAACGGAACAAGATGAAGCATGGCTCATATGCATCCACACATTCCGGTAGACACGCTTTCCAATCATCACGCCAGTTGGCAGTTCCAGCGAACTCGTAGTTTGGCGTCATCTCCTCATTATTCACGACAATCTTGATGAGCCGCAGTTTGGCCTGTTTTCCCAAGTTGAGTGCATTTCGAAGTGCGGCGTTTGCTGCAAAACGTCTCC</canonical>
            <polymorphic>AAGACTCACCTTCAAATGTTGTGGTCCGGCATGAGCGATGGCGGCTCTCTCTTGCTGAGCATTGTGAAGTTCTTTCTCAACTTCACTCATTGGTCCCAGTTCGGTTTTTGCTTTCAGCCATGATTCGAAGGCAGTGAGAGTAAGATCCTGGAAGAAACAAAACGGTTTATAAAAAAATTTAACTTGTATTTCACGGTTTCCAGGTTGAACATTTTAATTTTTAGAATTGTTTTTTTTTTCCAATTTGATTATTTTTTAAAAATTTCCAGTAAGCACATCAACGATTTTGTTTCAATTTACATATTCAAATTGTCCCATTTTTTTGTGCAGTCACCACAGATCACTAACCTTACGGTCCGTGACATGTTTCTCGTGTTCGATGTAACACTGTCCGAACTCGCTTTTGAATGTGGCACATGTGGCCGCCAGAAGCATCTTCTCGCGAACCGGAGCACGATCGTCGACGAATCTGCAACAAAAAACAAGATCGTTAGTTTTCSGTCAAGAAACATGTGCGGTCCATGAAATTTGTAAGAATTCATTCGGGTGTCGTGTCCTTTAAAAATTCGAAACATGTGTGCACATTTTTCAAAAAATTCATTAATCTTGTTTGTTATCGAAATTGAGATCGATTATGATAGAGTTGTTTTTTAGAACATGTTCAGAAAAGCCAGAATTTTGATCAGTCCATTCTAAAATTCCAAATTAGAAAAAGCAAAATAGTCATTTTTCAAGCACCCTAACATGAATTCCAAAACTTACGTTATCAAAACCCATTCAGTGATTGTATTCAAACGGAACAAGATGAAGCATGGCTCATATGCATCCACACATTCCGGTAGACACGCTTTCCAATCATCACGCCAGTTGGCAGTTCCAGCGAACTCGTAGTTTGGCGTCATCTCCTCATTATTCACGACAATCTTGATGAGCCGCAGTTTGGCCTGTTTTCCCAAGTTGAGTGCATTTCGAAGTGCGGCGTTTGCTGCAAAACGTCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGTAACACTGTCCGAACTC</pcr_primer_p1>
		<pcr_primer_p2>CAATTTCGATAACAAACAAGATT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GATGTAACACTGTCCGAACTCGCTTTTGAATGTGGCACATGTGGCCGCCAGAAGCATCTTCTCGCGAACCGGAGCACGATCGTCGACGAATCTGCAACAAAAAACAAGATCGTTAGTTTTCTGTCAAGAAACATGTGCGGTCCATGAAATTTGTAAGAATTCATTCGGGTGTCGTGTCCTTTAAAAATTCGAAACATGTGTGCACATTTTTCAAAAAATTCATTAATCTTGTTTGTTATCGAAATTG</canonical_amplicon>
		<polymorphic_amplicon>GATGTAACACTGTCCGAACTCGCTTTTGAATGTGGCACATGTGGCCGCCAGAAGCATCTTCTCGCGAACCGGAGCACGATCGTCGACGAATCTGCAACAAAAAACAAGATCGTTAGTTTTCSGTCAAGAAACATGTGCGGTCCATGAAATTTGTAAGAATTCATTCGGGTGTCGTGTCCTTTAAAAATTCGAAACATGTGTGCACATTTTTCAAAAAATTCATTAATCTTGTTTGTTATCGAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38714</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1144154</contig_pos>
        <strand>+</strand>
        <context>GAAATTTGTR[A/G]GAATTCATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGATCGTTAGTTTTCTGTCAAGAAACATGTGCGGTCCATGAAATTTGTA</left_flank>
        <right_flank>GAATTCATTCGGGTGTCGTGTCCTTTAAAAATTCGAAACATGTGTGCACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGATGGCGGCTCTCTCTTGCTGAGCATTGTGAAGTTCTTTCTCAACTTCACTCATTGGTCCCAGTTCGGTTTTTGCTTTCAGCCATGATTCGAAGGCAGTGAGAGTAAGATCCTGGAAGAAACAAAACGGTTTATAAAAAAATTTAACTTGTATTTCACGGTTTCCAGGTTGAACATTTTAATTTTTAGAATTGTTTTTTTTTTCCAATTTGATTATTTTTTAAAAATTTCCAGTAAGCACATCAACGATTTTGTTTCAATTTACATATTCAAATTGTCCCATTTTTTTGTGCAGTCACCACAGATCACTAACCTTACGGTCCGTGACATGTTTCTCGTGTTCGATGTAACACTGTCCGAACTCGCTTTTGAATGTGGCACATGTGGCCGCCAGAAGCATCTTCTCGCGAACCGGAGCACGATCGTCGACGAATCTGCAACAAAAAACAAGATCGTTAGTTTTCTGTCAAGAAACATGTGCGGTCCATGAAATTTGTAAGAATTCATTCGGGTGTCGTGTCCTTTAAAAATTCGAAACATGTGTGCACATTTTTCAAAAAATTCATTAATCTTGTTTGTTATCGAAATTGAGATCGATTATGATAGAGTTGTTTTTTAGAACATGTTCAGAAAAGCCAGAATTTTGATCAGTCCATTCTAAAATTCCAAATTAGAAAAAGCAAAATAGTCATTTTTCAAGCACCCTAACATGAATTCCAAAACTTACGTTATCAAAACCCATTCAGTGATTGTATTCAAACGGAACAAGATGAAGCATGGCTCATATGCATCCACACATTCCGGTAGACACGCTTTCCAATCATCACGCCAGTTGGCAGTTCCAGCGAACTCGTAGTTTGGCGTCATCTCCTCATTATTCACGACAATCTTGATGAGCCGCAGTTTGGCCTGTTTTCCCAAGTTGAGTGCATTTCGAAGTGCGGCGTTTGCTGCAAAACGTCTCCATTTTAGTGGTGTTGCTCGTCATTTCTGTTTCCC</canonical>
            <polymorphic>GCGATGGCGGCTCTCTCTTGCTGAGCATTGTGAAGTTCTTTCTCAACTTCACTCATTGGTCCCAGTTCGGTTTTTGCTTTCAGCCATGATTCGAAGGCAGTGAGAGTAAGATCCTGGAAGAAACAAAACGGTTTATAAAAAAATTTAACTTGTATTTCACGGTTTCCAGGTTGAACATTTTAATTTTTAGAATTGTTTTTTTTTTCCAATTTGATTATTTTTTAAAAATTTCCAGTAAGCACATCAACGATTTTGTTTCAATTTACATATTCAAATTGTCCCATTTTTTTGTGCAGTCACCACAGATCACTAACCTTACGGTCCGTGACATGTTTCTCGTGTTCGATGTAACACTGTCCGAACTCGCTTTTGAATGTGGCACATGTGGCCGCCAGAAGCATCTTCTCGCGAACCGGAGCACGATCGTCGACGAATCTGCAACAAAAAACAAGATCGTTAGTTTTCTGTCAAGAAACATGTGCGGTCCATGAAATTTGTARGAATTCATTCGGGTGTCGTGTCCTTTAAAAATTCGAAACATGTGTGCACATTTTTCAAAAAATTCATTAATCTTGTTTGTTATCGAAATTGAGATCGATTATGATAGAGTTGTTTTTTAGAACATGTTCAGAAAAGCCAGAATTTTGATCAGTCCATTCTAAAATTCCAAATTAGAAAAAGCAAAATAGTCATTTTTCAAGCACCCTAACATGAATTCCAAAACTTACGTTATCAAAACCCATTCAGTGATTGTATTCAAACGGAACAAGATGAAGCATGGCTCATATGCATCCACACATTCCGGTAGACACGCTTTCCAATCATCACGCCAGTTGGCAGTTCCAGCGAACTCGTAGTTTGGCGTCATCTCCTCATTATTCACGACAATCTTGATGAGCCGCAGTTTGGCCTGTTTTCCCAAGTTGAGTGCATTTCGAAGTGCGGCGTTTGCTGCAAAACGTCTCCATTTTAGTGGTGTTGCTCGTCATTTCTGTTTCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGTAACACTGTCCGAACTC</pcr_primer_p1>
		<pcr_primer_p2>CAATTTCGATAACAAACAAGATT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GATGTAACACTGTCCGAACTCGCTTTTGAATGTGGCACATGTGGCCGCCAGAAGCATCTTCTCGCGAACCGGAGCACGATCGTCGACGAATCTGCAACAAAAAACAAGATCGTTAGTTTTCTGTCAAGAAACATGTGCGGTCCATGAAATTTGTAAGAATTCATTCGGGTGTCGTGTCCTTTAAAAATTCGAAACATGTGTGCACATTTTTCAAAAAATTCATTAATCTTGTTTGTTATCGAAATTG</canonical_amplicon>
		<polymorphic_amplicon>GATGTAACACTGTCCGAACTCGCTTTTGAATGTGGCACATGTGGCCGCCAGAAGCATCTTCTCGCGAACCGGAGCACGATCGTCGACGAATCTGCAACAAAAAACAAGATCGTTAGTTTTCTGTCAAGAAACATGTGCGGTCCATGAAATTTGTARGAATTCATTCGGGTGTCGTGTCCTTTAAAAATTCGAAACATGTGTGCACATTTTTCAAAAAATTCATTAATCTTGTTTGTTATCGAAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38715</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1218044</contig_pos>
        <strand>+</strand>
        <context>GAAAAGTCAG[A/T]TTTTTTTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCGAGAAAGTTCAGAGTTATAAATAATGAAAAACTCGAAAGAAAAGTCAG</left_flank>
        <right_flank>TTTTTTTTCTCGAGCTAATTTTTGATTACAAAAAATTTACATACTTGGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTATCATTATTCGACAGATTCAATAAGAAAACGATTTATTCACAAAAACTACTATGTAAACAAGAACGGACACATATACAGTTTGAAAGTTTGAAAAACTAATTTTTCACTCGGAGGGAATTTCGCTTTGCCCACTTCACAACGGGTGACCTCGGCATCTTACGCTAACGAATAGTCACCATTACCGTTGAATGACAAATAGAACTCACACGTCTCCAGAAGTGAGGGAAAACCGCCTGGTTCAAGCTGTGTTGTTGACAAATAGGGTCTGGGATCTGGGAGAAGACAAAAATAATTTATATTTGGGAAAACGCATTTTTGCGTTACCAAAAGGATTCGTTATTTTCCTAGATAGATCAATGCAAAAGAACACTCCAGGGAATATCGAAAATGATTTGTTTCACTGAATCGGATATGAATAATTTTTTTTGGTAGGCTTGCATTATCCGAGAAAGTTCAGAGTTATAAATAATGAAAAACTCGAAAGAAAAGTCAGTTTTTTTTTCTCGAGCTAATTTTTGATTACAAAAAATTTACATACTTGGATTGTTCAATATCCTGTAATAAGTGAAGAATGGCCCCCACACTATGGCGCTTGAGCTGAATTTCCTGGCATCTCTGCACGATGTAAGAAATATATCTACTGATGAATTTTTTTCAACATTTAAGACAACTAATTTATCAGTGAGCCACATTTTTATATCTTTGACAGGAAAAAAAAAGTTACAGGGCCATTCTATGACGGGTTTAACGGCTAGCCCTTTGATATCTAGTCTCTTACAAAACGCAATTAAAGAGCGAAACCATAAATCTGAATGATTAGTGCTCTGGTGATGCAAGTATCTTTTAAAAATAGGATGTTTGAAACCAGAAGTGAGACGCCACGAGGAGTCGTCTTGACACCAAGCAACGGGACCAACATCACCACACACTACTAGTTTGCTAGACAGAGCAACACACATTTGAAATAGGAAAGTGGACAAAAAACTTAAAAGGC</canonical>
            <polymorphic>ATTCTATCATTATTCGACAGATTCAATAAGAAAACGATTTATTCACAAAAACTACTATGTAAACAAGAACGGACACATATACAGTTTGAAAGTTTGAAAAACTAATTTTTCACTCGGAGGGAATTTCGCTTTGCCCACTTCACAACGGGTGACCTCGGCATCTTACGCTAACGAATAGTCACCATTACCGTTGAATGACAAATAGAACTCACACGTCTCCAGAAGTGAGGGAAAACCGCCTGGTTCAAGCTGTGTTGTTGACAAATAGGGTCTGGGATCTGGGAGAAGACAAAAATAATTTATATTTGGGAAAACGCATTTTTGCGTTACCAAAAGGATTCGTTATTTTCCTAGATAGATCAATGCAAAAGAACACTCCAGGGAATATCGAAAATGATTTGTTTCACTGAATCGGATATGAATAATTTTTTTTGGTAGGCTTGCATTATCCGAGAAAGTTCAGAGTTATAAATAATGAAAAACTCGAAAGAAAAGTCAGWTTTTTTTTCTCGAGCTAATTTTTGATTACAAAAAATTTACATACTTGGATTGTTCAATATCCTGTAATAAGTGAAGAATGGCCCCCACACTATGGCGCTTGAGCTGAATTTCCTGGCATCTCTGCACGATGTAAGAAATATATCTACTGATGAATTTTTTTCAACATTTAAGACAACTAATTTATCAGTGAGCCACATTTTTATATCTTTGACAGGAAAAAAAAAGTTACAGGGCCATTCTATGACGGGTTTAACGGCTAGCCCTTTGATATCTAGTCTCTTACAAAACGCAATTAAAGAGCGAAACCATAAATCTGAATGATTAGTGCTCTGGTGATGCAAGTATCTTTTAAAAATAGGATGTTTGAAACCAGAAGTGAGACGCCACGAGGAGTCGTCTTGACACCAAGCAACGGGACCAACATCACCACACACTACTAGTTTGCTAGACAGAGCAACACACATTTGAAATAGGAAAGTGGACAAAAAACTTAAAAGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATCCGAGAAAGTTCAGAGTTA</pcr_primer_p1>
		<pcr_primer_p2>TTGCGTTTTGTAAGAGACTAGAT</pcr_primer_p2>
		<pcr_amplicon_size>348</pcr_amplicon_size>
		<canonical_amplicon>TTATCCGAGAAAGTTCAGAGTTATAAATAATGAAAAACTCGAAAGAAAAGTCAGTTTTTTTTTCTCGAGCTAATTTTTGATTACAAAAAATTTACATACTTGGATTGTTCAATATCCTGTAATAAGTGAAGAATGGCCCCCACACTATGGCGCTTGAGCTGAATTTCCTGGCATCTCTGCACGATGTAAGAAATATATCTACTGATGAATTTTTTTCAACATTTAAGACAACTAATTTATCAGTGAGCCACATTTTTATATCTTTGACAGGAAAAAAAAAGTTACAGGGCCATTCTATGACGGGTTTAACGGCTAGCCCTTTGATATCTAGTCTCTTACAAAACGCAA</canonical_amplicon>
		<polymorphic_amplicon>TTATCCGAGAAAGTTCAGAGTTATAAATAATGAAAAACTCGAAAGAAAAGTCAGWTTTTTTTTCTCGAGCTAATTTTTGATTACAAAAAATTTACATACTTGGATTGTTCAATATCCTGTAATAAGTGAAGAATGGCCCCCACACTATGGCGCTTGAGCTGAATTTCCTGGCATCTCTGCACGATGTAAGAAATATATCTACTGATGAATTTTTTTCAACATTTAAGACAACTAATTTATCAGTGAGCCACATTTTTATATCTTTGACAGGAAAAAAAAAGTTACAGGGCCATTCTATGACGGGTTTAACGGCTAGCCCTTTGATATCTAGTCTCTTACAAAACGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38716</snp_id>
        <super_contig>c013200197.Contig3</super_contig>
        <contig_pos>1220117</contig_pos>
        <strand>+</strand>
        <context>CGGAGAAAAA[C/T]GATTGACCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGATGTCTCTATGTATGTGTTGTGTGTATTTTTTTTTCACGGAGAAAAA</left_flank>
        <right_flank>GATTGACCTGTGTGTTTGTGTGTTATGAGGCAGACCTTTAGCTTTTCCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACAGCGCTCAAATACAGTGTCTTCTTTTAATACTCCTTTTGCACCCTCAAAATCAAATTTTGGTAGTAGAGTGTTCTCAAAAAGAATCGCTTGCAGGGAAAATTGTTTATTTAGATTTCCGTTCAACAGTCGCCTCTTGCTGTTCTGTCTTTCTTCTAAATTTGCTCAAAACTTCTCCCCTAATTTTTTTTGAGTGAAGAAGAGAAGACGAACTAGAGGAACGATGAGTAAAAGAAGCAACGGCTGAGAGAGAGAGAGAGGAGTGGGCCACTGAATGAAAAGGAAAACTAAGCAAAATAGAAGAGGCGCTTCGCTAAACGAACACGTGAACAAGTTGAAGTAGAAAGAAGTAGAAACGACGACTAAAAGAAGAGGACCGACGAGATGTCCGTTTTCTTGCGCCTTCTTCACCTCCTCTTACCAAACTCGTTTACATAGTTCTTCACATGGGATGTCTCTATGTATGTGTTGTGTGTATTTTTTTTTCACGGAGAAAAACGATTGACCTGTGTGTTTGTGTGTTATGAGGCAGACCTTTAGCTTTTCCGATGCTTCTTGCCCTTCCAACGTGTTTCTCATCTGAGTTTTCCTCCCTAACTTGAATTCCTAATTTGCTACTCGAAAGCTCCATTGTCTTTGTTCTGTCACACACGCATTTGGCTCTAGAAGCAAAACATAACTAATCCACCCACTTTAAACAATAAATTTTCGAAACTCGTTTCGGTGATTTTTTAAGAGAAACTGAGCTAATCTCAAAAGCTTCTGAATATTCAGAAGGTTTTTTAATTTTCACCCTAAAAAGTACATGTAGGTTTCTATTTATAAGTTTTTCAAATGAATTTGGGATGAATTAGTTTTTGATTTTTATAATTGCTGAGTTTGAAACCGTTTATGAAAGTTTTAAAGTCTATAACAAGGTAAGAAATGCTCAGATGAACGCATTCTTTCACGACCTACTGTTCATGAATACAGTTATCAGAAAGTCATGAAACCCGTCAG</canonical>
            <polymorphic>TACAGCGCTCAAATACAGTGTCTTCTTTTAATACTCCTTTTGCACCCTCAAAATCAAATTTTGGTAGTAGAGTGTTCTCAAAAAGAATCGCTTGCAGGGAAAATTGTTTATTTAGATTTCCGTTCAACAGTCGCCTCTTGCTGTTCTGTCTTTCTTCTAAATTTGCTCAAAACTTCTCCCCTAATTTTTTTTGAGTGAAGAAGAGAAGACGAACTAGAGGAACGATGAGTAAAAGAAGCAACGGCTGAGAGAGAGAGAGAGGAGTGGGCCACTGAATGAAAAGGAAAACTAAGCAAAATAGAAGAGGCGCTTCGCTAAACGAACACGTGAACAAGTTGAAGTAGAAAGAAGTAGAAACGACGACTAAAAGAAGAGGACCGACGAGATGTCCGTTTTCTTGCGCCTTCTTCACCTCCTCTTACCAAACTCGTTTACATAGTTCTTCACATGGGATGTCTCTATGTATGTGTTGTGTGTATTTTTTTTTCACGGAGAAAAAYGATTGACCTGTGTGTTTGTGTGTTATGAGGCAGACCTTTAGCTTTTCCGATGCTTCTTGCCCTTCCAACGTGTTTCTCATCTGAGTTTTCCTCCCTAACTTGAATTCCTAATTTGCTACTCGAAAGCTCCATTGTCTTTGTTCTGTCACACACGCATTTGGCTCTAGAAGCAAAACATAACTAATCCACCCACTTTAAACAATAAATTTTCGAAACTCGTTTCGGTGATTTTTTAAGAGAAACTGAGCTAATCTCAAAAGCTTCTGAATATTCAGAAGGTTTTTTAATTTTCACCCTAAAAAGTACATGTAGGTTTCTATTTATAAGTTTTTCAAATGAATTTGGGATGAATTAGTTTTTGATTTTTATAATTGCTGAGTTTGAAACCGTTTATGAAAGTTTTAAAGTCTATAACAAGGTAAGAAATGCTCAGATGAACGCATTCTTTCACGACCTACTGTTCATGAATACAGTTATCAGAAAGTCATGAAACCCGTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACATGGGATGTCTCTATGTATGT</pcr_primer_p1>
		<pcr_primer_p2>AAGTGGGTGGATTAGTTATGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACATGGGATGTCTCTATGTATGTGTTGTGTGTATTTTTTTTTCACGGAGAAAAACGATTGACCTGTGTGTTTGTGTGTTATGAGGCAGACCTTTAGCTTTTCCGATGCTTCTTGCCCTTCCAACGTGTTTCTCATCTGAGTTTTCCTCCCTAACTTGAATTCCTAATTTGCTACTCGAAAGCTCCATTGTCTTTGTTCTGTCACACACGCATTTGGCTCTAGAAGCAAAACATAACTAATCCACCCACTT</canonical_amplicon>
		<polymorphic_amplicon>ACATGGGATGTCTCTATGTATGTGTTGTGTGTATTTTTTTTTCACGGAGAAAAAYGATTGACCTGTGTGTTTGTGTGTTATGAGGCAGACCTTTAGCTTTTCCGATGCTTCTTGCCCTTCCAACGTGTTTCTCATCTGAGTTTTCCTCCCTAACTTGAATTCCTAATTTGCTACTCGAAAGCTCCATTGTCTTTGTTCTGTCACACACGCATTTGGCTCTAGAAGCAAAACATAACTAATCCACCCACTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38717</snp_id>
        <super_contig>c013200948.Contig2</super_contig>
        <contig_pos>15479</contig_pos>
        <strand>+</strand>
        <context>TGAGCATTCG[A/C]AAAAAAAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTTGCTCGCCGATAAGCTGGACTTTATTGCTTTGAAGGTGAGCATTCG</left_flank>
        <right_flank>AAAAAAAATGTATCATAACTTTTTAAAAATTGATGATAGAAGGCTGATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAGCCTTTTTTTTCTGAAAAACTGAAAATTTCAAAAAAAAAATTTCAAAAAATTCTGAAAACTTCAGCACCTGTTCCGCCATTCTATGTTCTTCAAGAACATGTTTTTCGAAAAAGGCGTCCAAGAAGGTAATGAGGAAATGGTGGAGCTTAAGGAGGCGACAGCAGAAGGATTCCAGATTTTTCTGGAACTTATTAATGGACAGAATCGATTATCAGGTGAGAAAATTTTAATGAAAAATGACTGAAAATCATGTAAAAAAGTTCAAAATGCATGGAAAAGGCTGAAAATGGCTGAAAATCATGAAAACCATCCAAAAAATCAATTTTTCCAGACGAGAATATAGAAGCTGTCACCAAGTGCTCCGCGATATGCCAGTCTGACATCCCCTCGAAAAAGTGTCTGAAATTTCTTCAAAAAAAGTCGAAGCTTTCGAAAACTGAGAAATTTTTGCTCGCCGATAAGCTGGACTTTATTGCTTTGAAGGTGAGCATTCGAAAAAAAAATGTATCATAACTTTTTAAAAATTGATGATAGAAGGCTGATTTTAATTTTGTTGAATTCAGCGTAAAAATTTAGTCTAGAGGATAATTAGGCCACATGAGACCCAACGAGACCAAACGAGACCAACACTCAATTTTTTAGGTCTCGTTGGGTCTCGTTAGATTTCGTTAGGTCAGACAAAAAAACAGGATAATTAGGCTGAGTGAGAACTCACGAGACTCAACAAAACTAGGTCAACGTCTCTTTAGGTCTCGTTGAGTCTTGTTAGGTCTTTTTAGGTCTCGTTGGGTCTCGTTAAATCTTGTTGTGTTTAGTTAGGTCTCGTTTGACTAAATTAATGCCTTGACATTTTCAAGCGTTGGCTCCTCAGTGATGTGAAAACCAATGAGGACATGGATGGCCTGCTTCCACCGCTCGATCTCTCGGCTTTCAAGCCGAATACCGTGGAATTGATCGCCAAAAAGTCGCTGTCGATCAATGGAGTTGATCGTCCG</canonical>
            <polymorphic>TTCAGCCTTTTTTTTCTGAAAAACTGAAAATTTCAAAAAAAAAATTTCAAAAAATTCTGAAAACTTCAGCACCTGTTCCGCCATTCTATGTTCTTCAAGAACATGTTTTTCGAAAAAGGCGTCCAAGAAGGTAATGAGGAAATGGTGGAGCTTAAGGAGGCGACAGCAGAAGGATTCCAGATTTTTCTGGAACTTATTAATGGACAGAATCGATTATCAGGTGAGAAAATTTTAATGAAAAATGACTGAAAATCATGTAAAAAAGTTCAAAATGCATGGAAAAGGCTGAAAATGGCTGAAAATCATGAAAACCATCCAAAAAATCAATTTTTCCAGACGAGAATATAGAAGCTGTCACCAAGTGCTCCGCGATATGCCAGTCTGACATCCCCTCGAAAAAGTGTCTGAAATTTCTTCAAAAAAAGTCGAAGCTTTCGAAAACTGAGAAATTTTTGCTCGCCGATAAGCTGGACTTTATTGCTTTGAAGGTGAGCATTCGMAAAAAAAATGTATCATAACTTTTTAAAAATTGATGATAGAAGGCTGATTTTAATTTTGTTGAATTCAGCGTAAAAATTTAGTCTAGAGGATAATTAGGCCACATGAGACCCAACGAGACCAAACGAGACCAACACTCAATTTTTTAGGTCTCGTTGGGTCTCGTTAGATTTCGTTAGGTCAGACAAAAAAACAGGATAATTAGGCTGAGTGAGAACTCACGAGACTCAACAAAACTAGGTCAACGTCTCTTTAGGTCTCGTTGAGTCTTGTTAGGTCTTTTTAGGTCTCGTTGGGTCTCGTTAAATCTTGTTGTGTTTAGTTAGGTCTCGTTTGACTAAATTAATGCCTTGACATTTTCAAGCGTTGGCTCCTCAGTGATGTGAAAACCAATGAGGACATGGATGGCCTGCTTCCACCGCTCGATCTCTCGGCTTTCAAGCCGAATACCGTGGAATTGATCGCCAAAAAGTCGCTGTCGATCAATGGAGTTGATCGTCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>503 325 110 62</canonical_bands>
                <polymorphic_bands>565 325 110</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>424 183 111 100 62 56 33 22 9</canonical_bands>
                <polymorphic_bands>486 183 111 100 56 33 22 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCCAGACGAGAATATAGAA</pcr_primer_p1>
		<pcr_primer_p2>TACGCTGAATTCAACAAAATTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCCAGACGAGAATATAGAAGCTGTCACCAAGTGCTCCGCGATATGCCAGTCTGACATCCCCTCGAAAAAGTGTCTGAAATTTCTTCAAAAAAAGTCGAAGCTTTCGAAAACTGAGAAATTTTTGCTCGCCGATAAGCTGGACTTTATTGCTTTGAAGGTGAGCATTCGAAAAAAAAATGTATCATAACTTTTTAAAAATTGATGATAGAAGGCTGATTTTAATTTTGTTGAATTCAGCGTA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCCAGACGAGAATATAGAAGCTGTCACCAAGTGCTCCGCGATATGCCAGTCTGACATCCCCTCGAAAAAGTGTCTGAAATTTCTTCAAAAAAAGTCGAAGCTTTCGAAAACTGAGAAATTTTTGCTCGCCGATAAGCTGGACTTTATTGCTTTGAAGGTGAGCATTCGMAAAAAAAATGTATCATAACTTTTTAAAAATTGATGATAGAAGGCTGATTTTAATTTTGTTGAATTCAGCGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38718</snp_id>
        <super_contig>c013200948.Contig2</super_contig>
        <contig_pos>15521</contig_pos>
        <strand>+</strand>
        <context>GATGATAGAA[G/T]GCTGATTTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGCATTCGAAAAAAAAATGTATCATAACTTTTTAAAAATTGATGATAGAA</left_flank>
        <right_flank>GCTGATTTTAATTTTGTTGAATTCAGCGTAAAAATTTAGTCTAGAGGATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTCAAAAAATTCTGAAAACTTCAGCACCTGTTCCGCCATTCTATGTTCTTCAAGAACATGTTTTTCGAAAAAGGCGTCCAAGAAGGTAATGAGGAAATGGTGGAGCTTAAGGAGGCGACAGCAGAAGGATTCCAGATTTTTCTGGAACTTATTAATGGACAGAATCGATTATCAGGTGAGAAAATTTTAATGAAAAATGACTGAAAATCATGTAAAAAAGTTCAAAATGCATGGAAAAGGCTGAAAATGGCTGAAAATCATGAAAACCATCCAAAAAATCAATTTTTCCAGACGAGAATATAGAAGCTGTCACCAAGTGCTCCGCGATATGCCAGTCTGACATCCCCTCGAAAAAGTGTCTGAAATTTCTTCAAAAAAAGTCGAAGCTTTCGAAAACTGAGAAATTTTTGCTCGCCGATAAGCTGGACTTTATTGCTTTGAAGGTGAGCATTCGAAAAAAAAATGTATCATAACTTTTTAAAAATTGATGATAGAAGGCTGATTTTAATTTTGTTGAATTCAGCGTAAAAATTTAGTCTAGAGGATAATTAGGCCACATGAGACCCAACGAGACCAAACGAGACCAACACTCAATTTTTTAGGTCTCGTTGGGTCTCGTTAGATTTCGTTAGGTCAGACAAAAAAACAGGATAATTAGGCTGAGTGAGAACTCACGAGACTCAACAAAACTAGGTCAACGTCTCTTTAGGTCTCGTTGAGTCTTGTTAGGTCTTTTTAGGTCTCGTTGGGTCTCGTTAAATCTTGTTGTGTTTAGTTAGGTCTCGTTTGACTAAATTAATGCCTTGACATTTTCAAGCGTTGGCTCCTCAGTGATGTGAAAACCAATGAGGACATGGATGGCCTGCTTCCACCGCTCGATCTCTCGGCTTTCAAGCCGAATACCGTGGAATTGATCGCCAAAAAGTCGCTGTCGATCAATGGAGTTGATCGTCCGCCACGTCCGATTGAAGCTCCTATGGGTTATCGTACTCAAAGA</canonical>
            <polymorphic>AATTTCAAAAAATTCTGAAAACTTCAGCACCTGTTCCGCCATTCTATGTTCTTCAAGAACATGTTTTTCGAAAAAGGCGTCCAAGAAGGTAATGAGGAAATGGTGGAGCTTAAGGAGGCGACAGCAGAAGGATTCCAGATTTTTCTGGAACTTATTAATGGACAGAATCGATTATCAGGTGAGAAAATTTTAATGAAAAATGACTGAAAATCATGTAAAAAAGTTCAAAATGCATGGAAAAGGCTGAAAATGGCTGAAAATCATGAAAACCATCCAAAAAATCAATTTTTCCAGACGAGAATATAGAAGCTGTCACCAAGTGCTCCGCGATATGCCAGTCTGACATCCCCTCGAAAAAGTGTCTGAAATTTCTTCAAAAAAAGTCGAAGCTTTCGAAAACTGAGAAATTTTTGCTCGCCGATAAGCTGGACTTTATTGCTTTGAAGGTGAGCATTCGAAAAAAAAATGTATCATAACTTTTTAAAAATTGATGATAGAAKGCTGATTTTAATTTTGTTGAATTCAGCGTAAAAATTTAGTCTAGAGGATAATTAGGCCACATGAGACCCAACGAGACCAAACGAGACCAACACTCAATTTTTTAGGTCTCGTTGGGTCTCGTTAGATTTCGTTAGGTCAGACAAAAAAACAGGATAATTAGGCTGAGTGAGAACTCACGAGACTCAACAAAACTAGGTCAACGTCTCTTTAGGTCTCGTTGAGTCTTGTTAGGTCTTTTTAGGTCTCGTTGGGTCTCGTTAAATCTTGTTGTGTTTAGTTAGGTCTCGTTTGACTAAATTAATGCCTTGACATTTTCAAGCGTTGGCTCCTCAGTGATGTGAAAACCAATGAGGACATGGATGGCCTGCTTCCACCGCTCGATCTCTCGGCTTTCAAGCCGAATACCGTGGAATTGATCGCCAAAAAGTCGCTGTCGATCAATGGAGTTGATCGTCCGCCACGTCCGATTGAAGCTCCTATGGGTTATCGTACTCAAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>164 135 108 106 80 76 76 56 55 38 36 26 26 10 8</canonical_bands>
                <polymorphic_bands>164 135 131 108 106 80 76 56 38 36 26 26 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTTATTGCTTTGAAGGTGAG</pcr_primer_p1>
		<pcr_primer_p2>GTGAGTTCTCACTCAGCCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTTTATTGCTTTGAAGGTGAGCATTCGAAAAAAAAATGTATCATAACTTTTTAAAAATTGATGATAGAAGGCTGATTTTAATTTTGTTGAATTCAGCGTAAAAATTTAGTCTAGAGGATAATTAGGCCACATGAGACCCAACGAGACCAAACGAGACCAACACTCAATTTTTTAGGTCTCGTTGGGTCTCGTTAGATTTCGTTAGGTCAGACAAAAAAACAGGATAATTAGGCTGAGTGAGAACTCAC</canonical_amplicon>
		<polymorphic_amplicon>ACTTTATTGCTTTGAAGGTGAGCATTCGAAAAAAAAATGTATCATAACTTTTTAAAAATTGATGATAGAAKGCTGATTTTAATTTTGTTGAATTCAGCGTAAAAATTTAGTCTAGAGGATAATTAGGCCACATGAGACCCAACGAGACCAAACGAGACCAACACTCAATTTTTTAGGTCTCGTTGGGTCTCGTTAGATTTCGTTAGGTCAGACAAAAAAACAGGATAATTAGGCTGAGTGAGAACTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38719</snp_id>
        <super_contig>c013200948.Contig2</super_contig>
        <contig_pos>16466</contig_pos>
        <strand></strand>
        <context>ttttaaaaat[A/C]tttttttttr</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAAT</left_flank>
        <right_flank>TTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGG</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTGATCGTCCGCCACGTCCGATTGAAGCTCCTATGGGTTATCGTACTCAAAGAAACGGAGCATCTCCACAAGAAATGCGGGAAATTCTATACATTTTAGGAAGGCATATCAATCAACCATGGGCTCGAAGAATACGAGACGAGCGTAATCCACTGAATGACCACGACAACGAGCTCCTAACGGAGCTCAATAACATCCAACAGAAGATCCGTAATGGTCCCGCATACAGTTTATGGGGTCAAAGACGTCCTGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAAAATCTGAAAATCTTGAAAATCTAGTTTTCTGTAAATTCCGAAATTCAAAAATCCATAAGTTTGAAAAATCCAAAAAATCCCAACATCAAGGTTTTCAAAAGTTTTTAAA</canonical>
            <polymorphic>AGTTGATCGTCCGCCACGTCCGATTGAAGCTCCTATGGGTTATCGTACTCAAAGAAACGGAGCATCTCCACAAGAAATGCGGGAAATTCTATACATTTTAGGAAGGCATATCAATCAACCATGGGCTCGAAGAATACGAGACGAGCGTAATCCACTGAATGACCACGACAACGAGCTCCTAACGGAGCTCAATAACATCCAACAGAAGATCCGTAATGGTCCCGCATACAGTTTATGGGGTCAAAGACGTCCTGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATMTTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAAAATCTGAAAATCTTGAAAATCTAGTTTTCTGTAAATTCCGAAATTCAAAAATCCATAAGTTTGAAAAATCCAAAAAATCCCAACATCAAGGTTTTCAAAAGTTTTTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 345 156</canonical_bands>
                <polymorphic_bands>655 345</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCTCCTCTTTTTCACATT</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAAACGGACAAAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATMTTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38720</snp_id>
        <super_contig>c013200948.Contig2</super_contig>
        <contig_pos>16476</contig_pos>
        <strand></strand>
        <context>mttttttttt[A/G]atttttGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTT</left_flank>
        <right_flank>ATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGCCACGTCCGATTGAAGCTCCTATGGGTTATCGTACTCAAAGAAACGGAGCATCTCCACAAGAAATGCGGGAAATTCTATACATTTTAGGAAGGCATATCAATCAACCATGGGCTCGAAGAATACGAGACGAGCGTAATCCACTGAATGACCACGACAACGAGCTCCTAACGGAGCTCAATAACATCCAACAGAAGATCCGTAATGGTCCCGCATACAGTTTATGGGGTCAAAGACGTCCTGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAAAATCTGAAAATCTTGAAAATCTAGTTTTCTGTAAATTCCGAAATTCAAAAATCCATAAGTTTGAAAAATCCAAAAAATCCCAACATCAAGGTTTTCAAAAGTTTTTAAATTTTAAAAAA</canonical>
            <polymorphic>CCGCCACGTCCGATTGAAGCTCCTATGGGTTATCGTACTCAAAGAAACGGAGCATCTCCACAAGAAATGCGGGAAATTCTATACATTTTAGGAAGGCATATCAATCAACCATGGGCTCGAAGAATACGAGACGAGCGTAATCCACTGAATGACCACGACAACGAGCTCCTAACGGAGCTCAATAACATCCAACAGAAGATCCGTAATGGTCCCGCATACAGTTTATGGGGTCAAAGACGTCCTGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTRATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAAAATCTGAAAATCTTGAAAATCTAGTTTTCTGTAAATTCCGAAATTCAAAAATCCATAAGTTTGAAAAATCCAAAAAATCCCAACATCAAGGTTTTCAAAAGTTTTTAAATTTTAAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>299 208 190 141 90 42 16 7 7</canonical_bands>
                <polymorphic_bands>299 208 206 141 90 42 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>306 108 74 66 61 55 52 49 45 37 22 19 18 12 11 11 9 9 8 8 8 7 5</canonical_bands>
                <polymorphic_bands>306 108 74 66 61 55 52 49 45 37 31 19 18 12 11 11 9 8 8 8 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTTTCTCCTCTTTTTCACATT</pcr_primer_p1>
		<pcr_primer_p2>AAAGAAAACGGACAAAAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTRATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38721</snp_id>
        <super_contig>c013200948.Contig2</super_contig>
        <contig_pos>16615</contig_pos>
        <strand></strand>
        <context>TTTTCTTTTC[G/A]AAAAATWYTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTC</left_flank>
        <right_flank>AAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCACTGAATGACCACGACAACGAGCTCCTAACGGAGCTCAATAACATCCAACAGAAGATCCGTAATGGTCCCGCATACAGTTTATGGGGTCAAAGACGTCCTGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAAAATCTGAAAATCTTGAAAATCTAGTTTTCTGTAAATTCCGAAATTCAAAAATCCATAAGTTTGAAAAATCCAAAAAATCCCAACATCAAGGTTTTCAAAAGTTTTTAAATTTTAAAAAAAAATTATTTTTTGGTTTTTTTTTTCAAATTTCACTAATTTGATCCCAACCTTTTCCATACCTGATTTTTCTTGAATTTTTCAAATTCCCAGCTCATTTCCATCCAATTTTCGTGCAATTTTCAGATAAATGGACCCGAC</canonical>
            <polymorphic>ATCCACTGAATGACCACGACAACGAGCTCCTAACGGAGCTCAATAACATCCAACAGAAGATCCGTAATGGTCCCGCATACAGTTTATGGGGTCAAAGACGTCCTGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCRAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAAAATCTGAAAATCTTGAAAATCTAGTTTTCTGTAAATTCCGAAATTCAAAAATCCATAAGTTTGAAAAATCCAAAAAATCCCAACATCAAGGTTTTCAAAAGTTTTTAAATTTTAAAAAAAAATTATTTTTTGGTTTTTTTTTTCAAATTTCACTAATTTGATCCCAACCTTTTCCATACCTGATTTTTCTTGAATTTTTCAAATTCCCAGCTCATTTCCATCCAATTTTCGTGCAATTTTCAGATAAATGGACCCGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>498 289 133 71 9</canonical_bands>
                <polymorphic_bands>631 289 71 9</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>316 288 120 90 71 63 43 9</canonical_bands>
                <polymorphic_bands>316 288 153 120 71 43 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATTCTATCACTTGGTTCTGA</pcr_primer_p1>
		<pcr_primer_p2>ATAATGGATTTTCGATGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>GAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTAT</canonical_amplicon>
		<polymorphic_amplicon>GAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCRAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38722</snp_id>
        <super_contig>c013200948.Contig2</super_contig>
        <contig_pos>16622</contig_pos>
        <strand></strand>
        <context>TTCRAAAAAT[A/T]YTGAAACCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAAT</left_flank>
        <right_flank>TTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATGACCACGACAACGAGCTCCTAACGGAGCTCAATAACATCCAACAGAAGATCCGTAATGGTCCCGCATACAGTTTATGGGGTCAAAGACGTCCTGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAAAATCTGAAAATCTTGAAAATCTAGTTTTCTGTAAATTCCGAAATTCAAAAATCCATAAGTTTGAAAAATCCAAAAAATCCCAACATCAAGGTTTTCAAAAGTTTTTAAATTTTAAAAAAAAATTATTTTTTGGTTTTTTTTTTCAAATTTCACTAATTTGATCCCAACCTTTTCCATACCTGATTTTTCTTGAATTTTTCAAATTCCCAGCTCATTTCCATCCAATTTTCGTGCAATTTTCAGATAAATGGACCCGACTTCTTCA</canonical>
            <polymorphic>GAATGACCACGACAACGAGCTCCTAACGGAGCTCAATAACATCCAACAGAAGATCCGTAATGGTCCCGCATACAGTTTATGGGGTCAAAGACGTCCTGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATWTTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAAAATCTGAAAATCTTGAAAATCTAGTTTTCTGTAAATTCCGAAATTCAAAAATCCATAAGTTTGAAAAATCCAAAAAATCCCAACATCAAGGTTTTCAAAAGTTTTTAAATTTTAAAAAAAAATTATTTTTTGGTTTTTTTTTTCAAATTTCACTAATTTGATCCCAACCTTTTCCATACCTGATTTTTCTTGAATTTTTCAAATTCCCAGCTCATTTCCATCCAATTTTCGTGCAATTTTCAGATAAATGGACCCGACTTCTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 343 156</canonical_bands>
                <polymorphic_bands>657 343</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATTCTATCACTTGGTTCTGA</pcr_primer_p1>
		<pcr_primer_p2>ATAATGGATTTTCGATGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>GAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTAT</canonical_amplicon>
		<polymorphic_amplicon>GAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATWTTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38723</snp_id>
        <super_contig>c013200948.Contig2</super_contig>
        <contig_pos>16623</contig_pos>
        <strand></strand>
        <context>TCRAAAAATW[T/C]TGAAACCAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATA</left_flank>
        <right_flank>TGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTC</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGACCACGACAACGAGCTCCTAACGGAGCTCAATAACATCCAACAGAAGATCCGTAATGGTCCCGCATACAGTTTATGGGGTCAAAGACGTCCTGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAAAATCTGAAAATCTTGAAAATCTAGTTTTCTGTAAATTCCGAAATTCAAAAATCCATAAGTTTGAAAAATCCAAAAAATCCCAACATCAAGGTTTTCAAAAGTTTTTAAATTTTAAAAAAAAATTATTTTTTGGTTTTTTTTTTCAAATTTCACTAATTTGATCCCAACCTTTTCCATACCTGATTTTTCTTGAATTTTTCAAATTCCCAGCTCATTTCCATCCAATTTTCGTGCAATTTTCAGATAAATGGACCCGACTTCTTCAT</canonical>
            <polymorphic>AATGACCACGACAACGAGCTCCTAACGGAGCTCAATAACATCCAACAGAAGATCCGTAATGGTCCCGCATACAGTTTATGGGGTCAAAGACGTCCTGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATAYTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAAAATCTGAAAATCTTGAAAATCTAGTTTTCTGTAAATTCCGAAATTCAAAAATCCATAAGTTTGAAAAATCCAAAAAATCCCAACATCAAGGTTTTCAAAAGTTTTTAAATTTTAAAAAAAAATTATTTTTTGGTTTTTTTTTTCAAATTTCACTAATTTGATCCCAACCTTTTCCATACCTGATTTTTCTTGAATTTTTCAAATTCCCAGCTCATTTCCATCCAATTTTCGTGCAATTTTCAGATAAATGGACCCGACTTCTTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 342 156</canonical_bands>
                <polymorphic_bands>658 342</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAATTCTATCACTTGGTTCTGA</pcr_primer_p1>
		<pcr_primer_p2>ATAATGGATTTTCGATGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>GAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTAT</canonical_amplicon>
		<polymorphic_amplicon>GAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATAYTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38724</snp_id>
        <super_contig>c013200948.Contig2</super_contig>
        <contig_pos>16635</contig_pos>
        <strand></strand>
        <context>GAAACCAAGA[T/A]ATTTTGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGA</left_flank>
        <right_flank>ATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGAGCTCCTAACGGAGCTCAATAACATCCAACAGAAGATCCGTAATGGTCCCGCATACAGTTTATGGGGTCAAAGACGTCCTGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAAAATCTGAAAATCTTGAAAATCTAGTTTTCTGTAAATTCCGAAATTCAAAAATCCATAAGTTTGAAAAATCCAAAAAATCCCAACATCAAGGTTTTCAAAAGTTTTTAAATTTTAAAAAAAAATTATTTTTTGGTTTTTTTTTTCAAATTTCACTAATTTGATCCCAACCTTTTCCATACCTGATTTTTCTTGAATTTTTCAAATTCCCAGCTCATTTCCATCCAATTTTCGTGCAATTTTCAGATAAATGGACCCGACTTCTTCATCATCAACTTCTC</canonical>
            <polymorphic>AACGAGCTCCTAACGGAGCTCAATAACATCCAACAGAAGATCCGTAATGGTCCCGCATACAGTTTATGGGGTCAAAGACGTCCTGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGAWATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAAAATCTGAAAATCTTGAAAATCTAGTTTTCTGTAAATTCCGAAATTCAAAAATCCATAAGTTTGAAAAATCCAAAAAATCCCAACATCAAGGTTTTCAAAAGTTTTTAAATTTTAAAAAAAAATTATTTTTTGGTTTTTTTTTTCAAATTTCACTAATTTGATCCCAACCTTTTCCATACCTGATTTTTCTTGAATTTTTCAAATTCCCAGCTCATTTCCATCCAATTTTCGTGCAATTTTCAGATAAATGGACCCGACTTCTTCATCATCAACTTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATTCTATCACTTGGTTCTGA</pcr_primer_p1>
		<pcr_primer_p2>ATAATGGATTTTCGATGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>GAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTAT</canonical_amplicon>
		<polymorphic_amplicon>GAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGAWATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38725</snp_id>
        <super_contig>c013200948.Contig2</super_contig>
        <contig_pos>16665</contig_pos>
        <strand></strand>
        <context>TTTTGAAATT[T/C]AATTTTTCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATT</left_flank>
        <right_flank>AATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAACAGAAGATCCGTAATGGTCCCGCATACAGTTTATGGGGTCAAAGACGTCCTGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAAAATCTGAAAATCTTGAAAATCTAGTTTTCTGTAAATTCCGAAATTCAAAAATCCATAAGTTTGAAAAATCCAAAAAATCCCAACATCAAGGTTTTCAAAAGTTTTTAAATTTTAAAAAAAAATTATTTTTTGGTTTTTTTTTTCAAATTTCACTAATTTGATCCCAACCTTTTCCATACCTGATTTTTCTTGAATTTTTCAAATTCCCAGCTCATTTCCATCCAATTTTCGTGCAATTTTCAGATAAATGGACCCGACTTCTTCATCATCAACTTCTCGAAAAAGAGTCAGATGGGCAGATGCACCAA</canonical>
            <polymorphic>CAACAGAAGATCCGTAATGGTCCCGCATACAGTTTATGGGGTCAAAGACGTCCTGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTYAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAAAATCTGAAAATCTTGAAAATCTAGTTTTCTGTAAATTCCGAAATTCAAAAATCCATAAGTTTGAAAAATCCAAAAAATCCCAACATCAAGGTTTTCAAAAGTTTTTAAATTTTAAAAAAAAATTATTTTTTGGTTTTTTTTTTCAAATTTCACTAATTTGATCCCAACCTTTTCCATACCTGATTTTTCTTGAATTTTTCAAATTCCCAGCTCATTTCCATCCAATTTTCGTGCAATTTTCAGATAAATGGACCCGACTTCTTCATCATCAACTTCTCGAAAAAGAGTCAGATGGGCAGATGCACCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>191 108 107 66 61 60 55 52 47 45 38 37 31 19 18 16 9 9 8 8 8 7</canonical_bands>
                <polymorphic_bands>191 108 107 66 61 60 55 52 47 45 38 37 31 24 19 18 9 9 8 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>208 196 190 141 110 90 42 16 7</canonical_bands>
                <polymorphic_bands>280 208 196 141 110 42 16 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTTTGTCCGTTTTCTTTTC</pcr_primer_p1>
		<pcr_primer_p2>ACCTTGATGTTGGGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>356</pcr_amplicon_size>
		<canonical_amplicon>CTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAAAATCTGAAAATCTTGAAAATCTAGTTTTCTGTAAATTCCGAAATTCAAAAATCCATAAGTTTGAAAAATCCAAAAAATCCCAACATCAAGGT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTYAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAAAATCTGAAAATCTTGAAAATCTAGTTTTCTGTAAATTCCGAAATTCAAAAATCCATAAGTTTGAAAAATCCAAAAAATCCCAACATCAAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38726</snp_id>
        <super_contig>c013200948.Contig2</super_contig>
        <contig_pos>16718</contig_pos>
        <strand></strand>
        <context>AATCCATTAT[T/G]CTAGAAATCG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTAT</left_flank>
        <right_flank>CTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAAAATCTGAAAATCTTGAAAATCTAGTTTTCTGTAAATTCCGAAATTCAAAAATCCATAAGTTTGAAAAATCCAAAAAATCCCAACATCAAGGTTTTCAAAAGTTTTTAAATTTTAAAAAAAAATTATTTTTTGGTTTTTTTTTTCAAATTTCACTAATTTGATCCCAACCTTTTCCATACCTGATTTTTCTTGAATTTTTCAAATTCCCAGCTCATTTCCATCCAATTTTCGTGCAATTTTCAGATAAATGGACCCGACTTCTTCATCATCAACTTCTCGAAAAAGAGTCAGATGGGCAGATGCACCAAATTCCAAAAAGAAGCCGATGGATTTTTCCACAGATGATCCAGCTCACTATGAC</canonical>
            <polymorphic>TGAACGCGAATGTTCTCGAGAAAGATCCCCACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATKCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAAAATCTGAAAATCTTGAAAATCTAGTTTTCTGTAAATTCCGAAATTCAAAAATCCATAAGTTTGAAAAATCCAAAAAATCCCAACATCAAGGTTTTCAAAAGTTTTTAAATTTTAAAAAAAAATTATTTTTTGGTTTTTTTTTTCAAATTTCACTAATTTGATCCCAACCTTTTCCATACCTGATTTTTCTTGAATTTTTCAAATTCCCAGCTCATTTCCATCCAATTTTCGTGCAATTTTCAGATAAATGGACCCGACTTCTTCATCATCAACTTCTCGAAAAAGAGTCAGATGGGCAGATGCACCAAATTCCAAAAAGAAGCCGATGGATTTTTCCACAGATGATCCAGCTCACTATGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>484 177 87 85 78 39 25 15 8 2</canonical_bands>
                <polymorphic_bands>492 177 87 85 78 39 25 15 2</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATCCTGGAAATTTTGAA</pcr_primer_p1>
		<pcr_primer_p2>ACCTTGATGTTGGGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>GAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAAAATCTGAAAATCTTGAAAATCTAGTTTTCTGTAAATTCCGAAATTCAAAAATCCATAAGTTTGAAAAATCCAAAAAATCCCAACATCAAGGT</canonical_amplicon>
		<polymorphic_amplicon>GAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATKCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAAAATCTGAAAATCTTGAAAATCTAGTTTTCTGTAAATTCCGAAATTCAAAAATCCATAAGTTTGAAAAATCCAAAAAATCCCAACATCAAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38727</snp_id>
        <super_contig>c013200948.Contig2</super_contig>
        <contig_pos>16747</contig_pos>
        <strand></strand>
        <context>caaaaacttt[C/T]gaaattttaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTT</left_flank>
        <right_flank>GAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAAAATCTGAAAATCTTGAAAATCTAGTTTTCTGTAAATTCCGAAATTCAAAAATCCATAAGTTTGAAAAATCCAAAAAATCCCAACATCAAGGTTTTCAAAAGTTTTTAAATTTTAAAAAAAAATTATTTTTTGGTTTTTTTTTTCAAATTTCACTAATTTGATCCCAACCTTTTCCATACCTGATTTTTCTTGAATTTTTCAAATTCCCAGCTCATTTCCATCCAATTTTCGTGCAATTTTCAGATAAATGGACCCGACTTCTTCATCATCAACTTCTCGAAAAAGAGTCAGATGGGCAGATGCACCAAATTCCAAAAAGAAGCCGATGGATTTTTCCACAGATGATCCAGCTCACTATGACGGTGTGGTCCGGGTAGAGGGACAGAATTT</canonical>
            <polymorphic>CACACCGTCCAACGTATGGATCAATGCTTAACAACACGCCTTTCGCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTYGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAAAATCTGAAAATCTTGAAAATCTAGTTTTCTGTAAATTCCGAAATTCAAAAATCCATAAGTTTGAAAAATCCAAAAAATCCCAACATCAAGGTTTTCAAAAGTTTTTAAATTTTAAAAAAAAATTATTTTTTGGTTTTTTTTTTCAAATTTCACTAATTTGATCCCAACCTTTTCCATACCTGATTTTTCTTGAATTTTTCAAATTCCCAGCTCATTTCCATCCAATTTTCGTGCAATTTTCAGATAAATGGACCCGACTTCTTCATCATCAACTTCTCGAAAAAGAGTCAGATGGGCAGATGCACCAAATTCCAAAAAGAAGCCGATGGATTTTTCCACAGATGATCCAGCTCACTATGACGGTGTGGTCCGGGTAGAGGGACAGAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>421 366 133 71 9</canonical_bands>
                <polymorphic_bands>421 366 204 9</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>308 304 112 90 71 63 43 9</canonical_bands>
                <polymorphic_bands>308 304 114 112 90 63 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCATCGAAAATCCATTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGAAAACCTTGATGTTG</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAAAATCTGAAAATCTTGAAAATCTAGTTTTCTGTAAATTCCGAAATTCAAAAATCCATAAGTTTGAAAAATCCAAAAAATCCCAACATCAAGGTTTTCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTYGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAAAATCTGAAAATCTTGAAAATCTAGTTTTCTGTAAATTCCGAAATTCAAAAATCCATAAGTTTGAAAAATCCAAAAAATCCCAACATCAAGGTTTTCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38728</snp_id>
        <super_contig>c013200948.Contig2</super_contig>
        <contig_pos>16791</contig_pos>
        <strand></strand>
        <context>aatcaaaatt[C/T]acgaatttcc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATT</left_flank>
        <right_flank>ACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAAAATCTGAAAATCTTGAAAATCTAGTTTTCTGTAAATTCCGAAATTCAAAAATCCATAAGTTTGAAAAATCCAAAAAATCCCAACATCAAGGTTTTCAAAAGTTTTTAAATTTTAAAAAAAAATTATTTTTTGGTTTTTTTTTTCAAATTTCACTAATTTGATCCCAACCTTTTCCATACCTGATTTTTCTTGAATTTTTCAAATTCCCAGCTCATTTCCATCCAATTTTCGTGCAATTTTCAGATAAATGGACCCGACTTCTTCATCATCAACTTCTCGAAAAAGAGTCAGATGGGCAGATGCACCAAATTCCAAAAAGAAGCCGATGGATTTTTCCACAGATGATCCAGCTCACTATGACGGTGTGGTCCGGGTAGAGGGACAGAATTTCTATATTTGTAAGCATGTGAGTTTTTTTTTTGGGAATTCAGAAA</canonical>
            <polymorphic>GCACGCTATGGAGCTCCGGGAGCTTTTTCATACAGTCCGTACAGGCAATAGAAGATCCCCTTATAAATTTTTGTCTCATTTTTCTCCTCTTTTTCACATTTTTTTTTGTAAATTTCTCATATTTTTAATGTTTCTTTTTTTTCTATATTTACTGAAATAAAAAATTTTAAAAATATTTTTTTTTAATTTTTGAAATTCTATCACTTGGTTCTGACAACCGGATGGAAATATCTCTATTTTTCAATTTTCCTGGAATTTTCGATTTCTATGTTTTTCGTCCGTTTATTGTCTGTTTTGAGCAACTTTTTGTCCGTTTTCTTTTCGAAAAATATTGAAACCAAGATATTTTGAAAATCCTGGAAATTTTGAAATTTAATTTTTCCGAAATTTTTCAAAAAATCTGAAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTYACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAAAATCTGAAAATCTTGAAAATCTAGTTTTCTGTAAATTCCGAAATTCAAAAATCCATAAGTTTGAAAAATCCAAAAAATCCCAACATCAAGGTTTTCAAAAGTTTTTAAATTTTAAAAAAAAATTATTTTTTGGTTTTTTTTTTCAAATTTCACTAATTTGATCCCAACCTTTTCCATACCTGATTTTTCTTGAATTTTTCAAATTCCCAGCTCATTTCCATCCAATTTTCGTGCAATTTTCAGATAAATGGACCCGACTTCTTCATCATCAACTTCTCGAAAAAGAGTCAGATGGGCAGATGCACCAAATTCCAAAAAGAAGCCGATGGATTTTTCCACAGATGATCCAGCTCACTATGACGGTGTGGTCCGGGTAGAGGGACAGAATTTCTATATTTGTAAGCATGTGAGTTTTTTTTTTGGGAATTCAGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>108 106 78 66 65 61 60 55 52 47 45 39 38 37 31 19 18 16 10 9 9 8 8 8 7</canonical_bands>
                <polymorphic_bands>108 106 78 66 65 61 60 55 52 47 45 45 39 38 31 19 18 16 10 9 9 8 8 7</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>298 217 107 93 81 71 42 34 25 16 11 3 2</canonical_bands>
                <polymorphic_bands>515 107 93 81 71 42 34 25 16 11 3 2</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>428 177 158 87 78 39 25 8</canonical_bands>
                <polymorphic_bands>428 177 158 103 87 39 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATCATCGAAAATCCATTA</pcr_primer_p1>
		<pcr_primer_p2>CTTTTGAAAACCTTGATGTTG</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>AAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTCACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAAAATCTGAAAATCTTGAAAATCTAGTTTTCTGTAAATTCCGAAATTCAAAAATCCATAAGTTTGAAAAATCCAAAAAATCCCAACATCAAGGTTTTCAAAAG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATCATCGAAAATCCATTATTCTAGAAATCGCGAAATTTCAAAAACTTTCGAAATTTTAAAGAAAAATCCTGAAAATCCCAAAAATCAAAATTYACGAATTTCCTAAAAATCAGAAAATTCGAAATTTTCGAAATTCTCAAAAACCCTGAGATTTCAAAAAATCTGAAAATCTTGAAAATCTAGTTTTCTGTAAATTCCGAAATTCAAAAATCCATAAGTTTGAAAAATCCAAAAAATCCCAACATCAAGGTTTTCAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38729</snp_id>
        <super_contig>c013201209.Contig1</super_contig>
        <contig_pos>3697</contig_pos>
        <strand>+</strand>
        <context>TGAACAATCC[A/G]GTRATYTTGR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCC</left_flank>
        <right_flank>GTGATTTTGGACTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATCTTGGACTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCAACAACAACTGGAACAACGTGTTCTGGTAGCTTCTCGTAGCTGAATTCGGTTGGATAGGAGCTGACTTCGGTTGTGAGAGGAATGTCGTGGATGTTGGAAGCACGGTGAGTTGAATCGAGTGGTCCTTCGTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATCTTGGACTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCAACAACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCGGTTGGATAGGAGCTGACTTCGGTTGTGAGAGGAATGTCGTGGATGTTGGAAGCACGGTGAGTTGAATCGAGTGGTCCTTCGTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATTTTGGACTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCAGATGGATAGGAAGTGACTTCATGAGAAAGTGGAACGTCCTGAAGGTTCTCGGCACGATGAGTTGAATCCAATGGTCCATCATAATGCTCGGAGACTGGATAGTCAGCATGAGCAGAAGACTTCTTGAACAATCCGGTAATCTTGGATTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCAGATGGATAGGAAGTGACTTCATGAGAAAGTGGAACGTCTTGAAGGTTCTCGGCACGATGAGTTGAATCCAATGGTCCATCATAATGCTCGGAGACTGGATAGTCAGCATGAGCAGAAGACTTCTTGAACAATCCGGTAATCTTGGATTTCAATGACTGTTCATCCTTCTTCTC</canonical>
            <polymorphic>GATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATCTTGGACTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCAACAACAACTGGAACAACGTGTTCTGGTAGCTTCTCGTAGCTGAATTCGGTTGGATAGGAGCTGACTTCGGTTGTGAGAGGAATGTCGTGGATGTTGGAAGCACGGTGAGTTGAATCGAGTGGTCCTTCGTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATCTTGGACTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCAACAACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCGGTTGGATAGGAGCTGACTTCGGTTGTGAGAGGAATGTCGTGGATGTTGGAAGCACGGTGAGTTGAATCGAGTGGTCCTTCGTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCRGTGATTTTGGACTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCAGATGGATAGGAAGTGACTTCATGAGAAAGTGGAACGTCCTGAAGGTTCTCGGCACGATGAGTTGAATCCAATGGTCCATCATAATGCTCGGAGACTGGATAGTCAGCATGAGCAGAAGACTTCTTGAACAATCCGGTAATCTTGGATTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCAGATGGATAGGAAGTGACTTCATGAGAAAGTGGAACGTCTTGAAGGTTCTCGGCACGATGAGTTGAATCCAATGGTCCATCATAATGCTCGGAGACTGGATAGTCAGCATGAGCAGAAGACTTCTTGAACAATCCGGTAATCTTGGATTTCAATGACTGTTCATCCTTCTTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATTGTTCCGAGATTGGATAG</pcr_primer_p1>
		<pcr_primer_p2>AGCATTATGATGGACCATTG</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATCTTGGACTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCAACAACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCGGTTGGATAGGAGCTGACTTCGGTTGTGAGAGGAATGTCGTGGATGTTGGAAGCACGGTGAGTTGAATCGAGTGGTCCTTCGTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATTTTGGACTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCAGATGGATAGGAAGTGACTTCATGAGAAAGTGGAACGTCCTGAAGGTTCTCGGCACGATGAGTTGAATCCAATGGTCCATCATAATGCT</canonical_amplicon>
		<polymorphic_amplicon>GTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATCTTGGACTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCAACAACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCGGTTGGATAGGAGCTGACTTCGGTTGTGAGAGGAATGTCGTGGATGTTGGAAGCACGGTGAGTTGAATCGAGTGGTCCTTCGTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCRGTGATTTTGGACTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCAGATGGATAGGAAGTGACTTCATGAGAAAGTGGAACGTCCTGAAGGTTCTCGGCACGATGAGTTGAATCCAATGGTCCATCATAATGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38730</snp_id>
        <super_contig>c013201209.Contig1</super_contig>
        <contig_pos>3700</contig_pos>
        <strand>+</strand>
        <context>ACAATCCRGT[A/G]ATYTTGRAYT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGT</left_flank>
        <right_flank>ATTTTGGACTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATCTTGGACTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCAACAACAACTGGAACAACGTGTTCTGGTAGCTTCTCGTAGCTGAATTCGGTTGGATAGGAGCTGACTTCGGTTGTGAGAGGAATGTCGTGGATGTTGGAAGCACGGTGAGTTGAATCGAGTGGTCCTTCGTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATCTTGGACTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCAACAACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCGGTTGGATAGGAGCTGACTTCGGTTGTGAGAGGAATGTCGTGGATGTTGGAAGCACGGTGAGTTGAATCGAGTGGTCCTTCGTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATTTTGGACTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCAGATGGATAGGAAGTGACTTCATGAGAAAGTGGAACGTCCTGAAGGTTCTCGGCACGATGAGTTGAATCCAATGGTCCATCATAATGCTCGGAGACTGGATAGTCAGCATGAGCAGAAGACTTCTTGAACAATCCGGTAATCTTGGATTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCAGATGGATAGGAAGTGACTTCATGAGAAAGTGGAACGTCTTGAAGGTTCTCGGCACGATGAGTTGAATCCAATGGTCCATCATAATGCTCGGAGACTGGATAGTCAGCATGAGCAGAAGACTTCTTGAACAATCCGGTAATCTTGGATTTCAATGACTGTTCATCCTTCTTCTCGGA</canonical>
            <polymorphic>AGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATCTTGGACTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCAACAACAACTGGAACAACGTGTTCTGGTAGCTTCTCGTAGCTGAATTCGGTTGGATAGGAGCTGACTTCGGTTGTGAGAGGAATGTCGTGGATGTTGGAAGCACGGTGAGTTGAATCGAGTGGTCCTTCGTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATCTTGGACTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCAACAACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCGGTTGGATAGGAGCTGACTTCGGTTGTGAGAGGAATGTCGTGGATGTTGGAAGCACGGTGAGTTGAATCGAGTGGTCCTTCGTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTRATTTTGGACTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCAGATGGATAGGAAGTGACTTCATGAGAAAGTGGAACGTCCTGAAGGTTCTCGGCACGATGAGTTGAATCCAATGGTCCATCATAATGCTCGGAGACTGGATAGTCAGCATGAGCAGAAGACTTCTTGAACAATCCGGTAATCTTGGATTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCAGATGGATAGGAAGTGACTTCATGAGAAAGTGGAACGTCTTGAAGGTTCTCGGCACGATGAGTTGAATCCAATGGTCCATCATAATGCTCGGAGACTGGATAGTCAGCATGAGCAGAAGACTTCTTGAACAATCCGGTAATCTTGGATTTCAATGACTGTTCATCCTTCTTCTCGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>149 122 65 65 65 55 55 45 45 43 43 23 23 20 20 20 18 16 16 14 14 14 14 13 13 5 5</canonical_bands>
                <polymorphic_bands>149 122 85 65 65 55 55 45 45 43 43 23 23 20 20 18 16 16 14 14 14 14 13 13 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATTGTTCCGAGATTGGATAG</pcr_primer_p1>
		<pcr_primer_p2>AGCATTATGATGGACCATTG</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATCTTGGACTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCAACAACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCGGTTGGATAGGAGCTGACTTCGGTTGTGAGAGGAATGTCGTGGATGTTGGAAGCACGGTGAGTTGAATCGAGTGGTCCTTCGTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATTTTGGACTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCAGATGGATAGGAAGTGACTTCATGAGAAAGTGGAACGTCCTGAAGGTTCTCGGCACGATGAGTTGAATCCAATGGTCCATCATAATGCT</canonical_amplicon>
		<polymorphic_amplicon>GTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATCTTGGACTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCAACAACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCGGTTGGATAGGAGCTGACTTCGGTTGTGAGAGGAATGTCGTGGATGTTGGAAGCACGGTGAGTTGAATCGAGTGGTCCTTCGTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTRATTTTGGACTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCAGATGGATAGGAAGTGACTTCATGAGAAAGTGGAACGTCCTGAAGGTTCTCGGCACGATGAGTTGAATCCAATGGTCCATCATAATGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38731</snp_id>
        <super_contig>c013201209.Contig1</super_contig>
        <contig_pos>3703</contig_pos>
        <strand>+</strand>
        <context>ATCCRGTRAT[C/T]TTGRAYTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGAT</left_flank>
        <right_flank>TTGGACTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATCTTGGACTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCAACAACAACTGGAACAACGTGTTCTGGTAGCTTCTCGTAGCTGAATTCGGTTGGATAGGAGCTGACTTCGGTTGTGAGAGGAATGTCGTGGATGTTGGAAGCACGGTGAGTTGAATCGAGTGGTCCTTCGTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATCTTGGACTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCAACAACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCGGTTGGATAGGAGCTGACTTCGGTTGTGAGAGGAATGTCGTGGATGTTGGAAGCACGGTGAGTTGAATCGAGTGGTCCTTCGTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATTTTGGACTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCAGATGGATAGGAAGTGACTTCATGAGAAAGTGGAACGTCCTGAAGGTTCTCGGCACGATGAGTTGAATCCAATGGTCCATCATAATGCTCGGAGACTGGATAGTCAGCATGAGCAGAAGACTTCTTGAACAATCCGGTAATCTTGGATTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCAGATGGATAGGAAGTGACTTCATGAGAAAGTGGAACGTCTTGAAGGTTCTCGGCACGATGAGTTGAATCCAATGGTCCATCATAATGCTCGGAGACTGGATAGTCAGCATGAGCAGAAGACTTCTTGAACAATCCGGTAATCTTGGATTTCAATGACTGTTCATCCTTCTTCTCGGATTC</canonical>
            <polymorphic>CAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATCTTGGACTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCAACAACAACTGGAACAACGTGTTCTGGTAGCTTCTCGTAGCTGAATTCGGTTGGATAGGAGCTGACTTCGGTTGTGAGAGGAATGTCGTGGATGTTGGAAGCACGGTGAGTTGAATCGAGTGGTCCTTCGTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATCTTGGACTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCAACAACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCGGTTGGATAGGAGCTGACTTCGGTTGTGAGAGGAATGTCGTGGATGTTGGAAGCACGGTGAGTTGAATCGAGTGGTCCTTCGTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATYTTGGACTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCAGATGGATAGGAAGTGACTTCATGAGAAAGTGGAACGTCCTGAAGGTTCTCGGCACGATGAGTTGAATCCAATGGTCCATCATAATGCTCGGAGACTGGATAGTCAGCATGAGCAGAAGACTTCTTGAACAATCCGGTAATCTTGGATTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCAGATGGATAGGAAGTGACTTCATGAGAAAGTGGAACGTCTTGAAGGTTCTCGGCACGATGAGTTGAATCCAATGGTCCATCATAATGCTCGGAGACTGGATAGTCAGCATGAGCAGAAGACTTCTTGAACAATCCGGTAATCTTGGATTTCAATGACTGTTCATCCTTCTTCTCGGATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATTGTTCCGAGATTGGATAG</pcr_primer_p1>
		<pcr_primer_p2>AGCATTATGATGGACCATTG</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATCTTGGACTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCAACAACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCGGTTGGATAGGAGCTGACTTCGGTTGTGAGAGGAATGTCGTGGATGTTGGAAGCACGGTGAGTTGAATCGAGTGGTCCTTCGTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATTTTGGACTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCAGATGGATAGGAAGTGACTTCATGAGAAAGTGGAACGTCCTGAAGGTTCTCGGCACGATGAGTTGAATCCAATGGTCCATCATAATGCT</canonical_amplicon>
		<polymorphic_amplicon>GTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATCTTGGACTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCAACAACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCGGTTGGATAGGAGCTGACTTCGGTTGTGAGAGGAATGTCGTGGATGTTGGAAGCACGGTGAGTTGAATCGAGTGGTCCTTCGTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATYTTGGACTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCAGATGGATAGGAAGTGACTTCATGAGAAAGTGGAACGTCCTGAAGGTTCTCGGCACGATGAGTTGAATCCAATGGTCCATCATAATGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38732</snp_id>
        <super_contig>c013201209.Contig1</super_contig>
        <contig_pos>3707</contig_pos>
        <strand>+</strand>
        <context>RGTRATYTTG[A/G]AYTTCAATGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATTTTG</left_flank>
        <right_flank>ACTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAACTGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAGATGGTGACTTCTTGAACAATCCAGTGATCTTGGACTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCAACAACAACTGGAACAACGTGTTCTGGTAGCTTCTCGTAGCTGAATTCGGTTGGATAGGAGCTGACTTCGGTTGTGAGAGGAATGTCGTGGATGTTGGAAGCACGGTGAGTTGAATCGAGTGGTCCTTCGTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATCTTGGACTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCAACAACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCGGTTGGATAGGAGCTGACTTCGGTTGTGAGAGGAATGTCGTGGATGTTGGAAGCACGGTGAGTTGAATCGAGTGGTCCTTCGTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATTTTGGACTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCAGATGGATAGGAAGTGACTTCATGAGAAAGTGGAACGTCCTGAAGGTTCTCGGCACGATGAGTTGAATCCAATGGTCCATCATAATGCTCGGAGACTGGATAGTCAGCATGAGCAGAAGACTTCTTGAACAATCCGGTAATCTTGGATTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCAGATGGATAGGAAGTGACTTCATGAGAAAGTGGAACGTCTTGAAGGTTCTCGGCACGATGAGTTGAATCCAATGGTCCATCATAATGCTCGGAGACTGGATAGTCAGCATGAGCAGAAGACTTCTTGAACAATCCGGTAATCTTGGATTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCA</canonical>
            <polymorphic>ATGAGATGGTGACTTCTTGAACAATCCAGTGATCTTGGACTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCAACAACAACTGGAACAACGTGTTCTGGTAGCTTCTCGTAGCTGAATTCGGTTGGATAGGAGCTGACTTCGGTTGTGAGAGGAATGTCGTGGATGTTGGAAGCACGGTGAGTTGAATCGAGTGGTCCTTCGTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATCTTGGACTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCAACAACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCGGTTGGATAGGAGCTGACTTCGGTTGTGAGAGGAATGTCGTGGATGTTGGAAGCACGGTGAGTTGAATCGAGTGGTCCTTCGTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATTTTGRACTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCAGATGGATAGGAAGTGACTTCATGAGAAAGTGGAACGTCCTGAAGGTTCTCGGCACGATGAGTTGAATCCAATGGTCCATCATAATGCTCGGAGACTGGATAGTCAGCATGAGCAGAAGACTTCTTGAACAATCCGGTAATCTTGGATTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCAGATGGATAGGAAGTGACTTCATGAGAAAGTGGAACGTCTTGAAGGTTCTCGGCACGATGAGTTGAATCCAATGGTCCATCATAATGCTCGGAGACTGGATAGTCAGCATGAGCAGAAGACTTCTTGAACAATCCGGTAATCTTGGATTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTGGATAGTCAAGATGAGATG</pcr_primer_p1>
		<pcr_primer_p2>TATCCAGTCTCCGAGCATTA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATCTTGGACTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCAACAACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCGGTTGGATAGGAGCTGACTTCGGTTGTGAGAGGAATGTCGTGGATGTTGGAAGCACGGTGAGTTGAATCGAGTGGTCCTTCGTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATTTTGGACTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCAGATGGATAGGAAGTGACTTCATGAGAAAGTGGAACGTCCTGAAGGTTCTCGGCACGATGAGTTGAATCCAATGGTCCATCATAATGCTCGGAGACTGGATA</canonical_amplicon>
		<polymorphic_amplicon>GATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATCTTGGACTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCAACAACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCGGTTGGATAGGAGCTGACTTCGGTTGTGAGAGGAATGTCGTGGATGTTGGAAGCACGGTGAGTTGAATCGAGTGGTCCTTCGTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATTTTGRACTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCAGATGGATAGGAAGTGACTTCATGAGAAAGTGGAACGTCCTGAAGGTTCTCGGCACGATGAGTTGAATCCAATGGTCCATCATAATGCTCGGAGACTGGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38733</snp_id>
        <super_contig>c013201209.Contig1</super_contig>
        <contig_pos>3709</contig_pos>
        <strand>+</strand>
        <context>TRATYTTGRA[C/T]TTCAATGATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATTTTGGA</left_flank>
        <right_flank>TTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAACTGGAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGATGGTGACTTCTTGAACAATCCAGTGATCTTGGACTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCAACAACAACTGGAACAACGTGTTCTGGTAGCTTCTCGTAGCTGAATTCGGTTGGATAGGAGCTGACTTCGGTTGTGAGAGGAATGTCGTGGATGTTGGAAGCACGGTGAGTTGAATCGAGTGGTCCTTCGTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATCTTGGACTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCAACAACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCGGTTGGATAGGAGCTGACTTCGGTTGTGAGAGGAATGTCGTGGATGTTGGAAGCACGGTGAGTTGAATCGAGTGGTCCTTCGTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATTTTGGACTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCAGATGGATAGGAAGTGACTTCATGAGAAAGTGGAACGTCCTGAAGGTTCTCGGCACGATGAGTTGAATCCAATGGTCCATCATAATGCTCGGAGACTGGATAGTCAGCATGAGCAGAAGACTTCTTGAACAATCCGGTAATCTTGGATTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCAGATGGATAGGAAGTGACTTCATGAGAAAGTGGAACGTCTTGAAGGTTCTCGGCACGATGAGTTGAATCCAATGGTCCATCATAATGCTCGGAGACTGGATAGTCAGCATGAGCAGAAGACTTCTTGAACAATCCGGTAATCTTGGATTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCAAC</canonical>
            <polymorphic>GAGATGGTGACTTCTTGAACAATCCAGTGATCTTGGACTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCAACAACAACTGGAACAACGTGTTCTGGTAGCTTCTCGTAGCTGAATTCGGTTGGATAGGAGCTGACTTCGGTTGTGAGAGGAATGTCGTGGATGTTGGAAGCACGGTGAGTTGAATCGAGTGGTCCTTCGTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATCTTGGACTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCAACAACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCGGTTGGATAGGAGCTGACTTCGGTTGTGAGAGGAATGTCGTGGATGTTGGAAGCACGGTGAGTTGAATCGAGTGGTCCTTCGTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATTTTGGAYTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCAGATGGATAGGAAGTGACTTCATGAGAAAGTGGAACGTCCTGAAGGTTCTCGGCACGATGAGTTGAATCCAATGGTCCATCATAATGCTCGGAGACTGGATAGTCAGCATGAGCAGAAGACTTCTTGAACAATCCGGTAATCTTGGATTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCAGATGGATAGGAAGTGACTTCATGAGAAAGTGGAACGTCTTGAAGGTTCTCGGCACGATGAGTTGAATCCAATGGTCCATCATAATGCTCGGAGACTGGATAGTCAGCATGAGCAGAAGACTTCTTGAACAATCCGGTAATCTTGGATTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTGGATAGTCAAGATGAGATG</pcr_primer_p1>
		<pcr_primer_p2>TATCCAGTCTCCGAGCATTA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATCTTGGACTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCAACAACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCGGTTGGATAGGAGCTGACTTCGGTTGTGAGAGGAATGTCGTGGATGTTGGAAGCACGGTGAGTTGAATCGAGTGGTCCTTCGTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATTTTGGACTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCAGATGGATAGGAAGTGACTTCATGAGAAAGTGGAACGTCCTGAAGGTTCTCGGCACGATGAGTTGAATCCAATGGTCCATCATAATGCTCGGAGACTGGATA</canonical_amplicon>
		<polymorphic_amplicon>GATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATCTTGGACTTCAATGACTGTTCATCCTTCTTCTCGGATTCTTCAACAACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCGGTTGGATAGGAGCTGACTTCGGTTGTGAGAGGAATGTCGTGGATGTTGGAAGCACGGTGAGTTGAATCGAGTGGTCCTTCGTATTGTTCCGAGATTGGATAGTCAAGATGAGATGGTGACTTCTTGAACAATCCAGTGATTTTGGAYTTCAATGATGGTTCGTCCTTCTTCTCGGTCTCCTCGATGACAACTGGAACAACGTGTTCTGGCAGCTTCTCGTAGCTGAATTCAGATGGATAGGAAGTGACTTCATGAGAAAGTGGAACGTCCTGAAGGTTCTCGGCACGATGAGTTGAATCCAATGGTCCATCATAATGCTCGGAGACTGGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38734</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>6256</contig_pos>
        <strand></strand>
        <context>cggtgacaaa[C/T]ggtasataag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTGCTTCTTAGATTAGATTAGATTTATTTATTTTCAGAGCGGTGACAAA</left_flank>
        <right_flank>GGTACATAAGAAAAAGGCAGCCCCCCTCACGAGGAGCGCTTAATAAGTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAGAATCAGACGAATAAAAGGATTTCTAGAGTAACTTGACGCAATAATTGATACAAAAAATTGATGCAAAAAAAATTTTTTAGACCACTAGAATATCCCTATTGGATACTGTCATAATTTTCGCATTCGATATACTTCCCTCATTTCTGTTCACTCATTTTCCAGCTGTCAATTTTGAAACTGTTGGGCCATTGAGTGCGTTATGCAAGAACTTTGGATTTGTTATTGAGGCGATAATTATTTGTAAAGTTTTAATTGGGAAGAACGGAGTCGCGCCAATTAACACTAGTAAATACACACCAAACGCTTCTTAAGGATTATGTACTTTTGTAATGAATTCGTTGTTTTTTATTGTTTCGCACAATTTGAATTTTTCCGGTCGAAGATTTCTTACACGGGATCATGATTTTTTGGTCCGTCGTTTTTTTTTGGTTTGTGTTTTTTTCCTGTGCTTCTTAGATTAGATTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCCTCACGAGGAGCGCTTAATAAGTTAAAAAAAGAAGAATAATGGAAAAGGGAGGAATTATATACAGTAAAATACATGTGTTAAAAATAAGGATAATAGCTAGTAGCGAGAAATAGAAGAATCAAGGAGATTTTCAAATTGGGACGGGGTGAGGAAATGGGGTACATTGGCAGTTATGACTTTATTAAAACGCCACCCAATACGTTCTCATTTTTGAGCTTAATTATTTCGGTTCTTATAAAATTTCACATAAAAAAATGTGAACTGATAAAATATTCATCGTATTATCAGCAACATTTTATCAGTTGACACCAGAGATGTCCGGATTCCGGATTCCGTGCTTTTTTTCATTCCGGATTCCGGATTCCGAATTCCGTGAAAAATATTTTTGTCCGGATTCCGTATTCAGAAAATGTGTTAATCTGCATGAATTCTCTGCCGTTTTTGAACTTCAGAGACTAATAATGCGAAAATAAA</canonical>
            <polymorphic>CCAAGAATCAGACGAATAAAAGGATTTCTAGAGTAACTTGACGCAATAATTGATACAAAAAATTGATGCAAAAAAAATTTTTTAGACCACTAGAATATCCCTATTGGATACTGTCATAATTTTCGCATTCGATATACTTCCCTCATTTCTGTTCACTCATTTTCCAGCTGTCAATTTTGAAACTGTTGGGCCATTGAGTGCGTTATGCAAGAACTTTGGATTTGTTATTGAGGCGATAATTATTTGTAAAGTTTTAATTGGGAAGAACGGAGTCGCGCCAATTAACACTAGTAAATACACACCAAACGCTTCTTAAGGATTATGTACTTTTGTAATGAATTCGTTGTTTTTTATTGTTTCGCACAATTTGAATTTTTCCGGTCGAAGATTTCTTACACGGGATCATGATTTTTTGGTCCGTCGTTTTTTTTTGGTTTGTGTTTTTTTCCTGTGCTTCTTAGATTAGATTAGATTTATTTATTTTCAGAGCGGTGACAAAYGGTACATAAGAAAAAGGCAGCCCCCCTCACGAGGAGCGCTTAATAAGTTAAAAAAAGAAGAATAATGGAAAAGGGAGGAATTATATACAGTAAAATACATGTGTTAAAAATAAGGATAATAGCTAGTAGCGAGAAATAGAAGAATCAAGGAGATTTTCAAATTGGGACGGGGTGAGGAAATGGGGTACATTGGCAGTTATGACTTTATTAAAACGCCACCCAATACGTTCTCATTTTTGAGCTTAATTATTTCGGTTCTTATAAAATTTCACATAAAAAAATGTGAACTGATAAAATATTCATCGTATTATCAGCAACATTTTATCAGTTGACACCAGAGATGTCCGGATTCCGGATTCCGTGCTTTTTTTCATTCCGGATTCCGGATTCCGAATTCCGTGAAAAATATTTTTGTCCGGATTCCGTATTCAGAAAATGTGTTAATCTGCATGAATTCTCTGCCGTTTTTGAACTTCAGAGACTAATAATGCGAAAATAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>411 317 112 88 72</canonical_bands>
                <polymorphic_bands>411 405 112 72</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTGTGCTTCTTAGATTAGATT</pcr_primer_p1>
		<pcr_primer_p2>CAAGTGTCAGAGAACGTATATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>739</pcr_amplicon_size>
		<canonical_amplicon>TCCTGTGCTTCTTAGATTAGATTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCC</canonical_amplicon>
		<polymorphic_amplicon>TCCTGTGCTTCTTAGATTAGATTAGATTTATTTATTTTCAGAGCGGTGACAAAYGGTACATAAGAAAAAGGCAGCCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38735</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>6261</contig_pos>
        <strand></strand>
        <context>acaaayggta[C/G]ataagaaaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCTTAGATTAGATTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTA</left_flank>
        <right_flank>ATAAGAAAAAGGCAGCCCCCCTCACGAGGAGCGCTTAATAAGTTAAAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCAGACGAATAAAAGGATTTCTAGAGTAACTTGACGCAATAATTGATACAAAAAATTGATGCAAAAAAAATTTTTTAGACCACTAGAATATCCCTATTGGATACTGTCATAATTTTCGCATTCGATATACTTCCCTCATTTCTGTTCACTCATTTTCCAGCTGTCAATTTTGAAACTGTTGGGCCATTGAGTGCGTTATGCAAGAACTTTGGATTTGTTATTGAGGCGATAATTATTTGTAAAGTTTTAATTGGGAAGAACGGAGTCGCGCCAATTAACACTAGTAAATACACACCAAACGCTTCTTAAGGATTATGTACTTTTGTAATGAATTCGTTGTTTTTTATTGTTTCGCACAATTTGAATTTTTCCGGTCGAAGATTTCTTACACGGGATCATGATTTTTTGGTCCGTCGTTTTTTTTTGGTTTGTGTTTTTTTCCTGTGCTTCTTAGATTAGATTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCCTCACGAGGAGCGCTTAATAAGTTAAAAAAAGAAGAATAATGGAAAAGGGAGGAATTATATACAGTAAAATACATGTGTTAAAAATAAGGATAATAGCTAGTAGCGAGAAATAGAAGAATCAAGGAGATTTTCAAATTGGGACGGGGTGAGGAAATGGGGTACATTGGCAGTTATGACTTTATTAAAACGCCACCCAATACGTTCTCATTTTTGAGCTTAATTATTTCGGTTCTTATAAAATTTCACATAAAAAAATGTGAACTGATAAAATATTCATCGTATTATCAGCAACATTTTATCAGTTGACACCAGAGATGTCCGGATTCCGGATTCCGTGCTTTTTTTCATTCCGGATTCCGGATTCCGAATTCCGTGAAAAATATTTTTGTCCGGATTCCGTATTCAGAAAATGTGTTAATCTGCATGAATTCTCTGCCGTTTTTGAACTTCAGAGACTAATAATGCGAAAATAAAGCCCA</canonical>
            <polymorphic>AATCAGACGAATAAAAGGATTTCTAGAGTAACTTGACGCAATAATTGATACAAAAAATTGATGCAAAAAAAATTTTTTAGACCACTAGAATATCCCTATTGGATACTGTCATAATTTTCGCATTCGATATACTTCCCTCATTTCTGTTCACTCATTTTCCAGCTGTCAATTTTGAAACTGTTGGGCCATTGAGTGCGTTATGCAAGAACTTTGGATTTGTTATTGAGGCGATAATTATTTGTAAAGTTTTAATTGGGAAGAACGGAGTCGCGCCAATTAACACTAGTAAATACACACCAAACGCTTCTTAAGGATTATGTACTTTTGTAATGAATTCGTTGTTTTTTATTGTTTCGCACAATTTGAATTTTTCCGGTCGAAGATTTCTTACACGGGATCATGATTTTTTGGTCCGTCGTTTTTTTTTGGTTTGTGTTTTTTTCCTGTGCTTCTTAGATTAGATTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTASATAAGAAAAAGGCAGCCCCCCTCACGAGGAGCGCTTAATAAGTTAAAAAAAGAAGAATAATGGAAAAGGGAGGAATTATATACAGTAAAATACATGTGTTAAAAATAAGGATAATAGCTAGTAGCGAGAAATAGAAGAATCAAGGAGATTTTCAAATTGGGACGGGGTGAGGAAATGGGGTACATTGGCAGTTATGACTTTATTAAAACGCCACCCAATACGTTCTCATTTTTGAGCTTAATTATTTCGGTTCTTATAAAATTTCACATAAAAAAATGTGAACTGATAAAATATTCATCGTATTATCAGCAACATTTTATCAGTTGACACCAGAGATGTCCGGATTCCGGATTCCGTGCTTTTTTTCATTCCGGATTCCGGATTCCGAATTCCGTGAAAAATATTTTTGTCCGGATTCCGTATTCAGAAAATGTGTTAATCTGCATGAATTCTCTGCCGTTTTTGAACTTCAGAGACTAATAATGCGAAAATAAAGCCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>320 319 183 178</canonical_bands>
                <polymorphic_bands>361 320 319</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTGTGCTTCTTAGATTAGATT</pcr_primer_p1>
		<pcr_primer_p2>CAAGTGTCAGAGAACGTATATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>739</pcr_amplicon_size>
		<canonical_amplicon>TCCTGTGCTTCTTAGATTAGATTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCCTCA</canonical_amplicon>
		<polymorphic_amplicon>TCCTGTGCTTCTTAGATTAGATTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTASATAAGAAAAAGGCAGCCCCCCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38736</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>6296</contig_pos>
        <strand></strand>
        <context>cgaggagcgc[T/C]taataagtta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCCTCACGAGGAGCGC</left_flank>
        <right_flank>TAATAAGTTAAAAAAAGAAGAATAATGGAAAAGGGAGGAATTATATACAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGCAATAATTGATACAAAAAATTGATGCAAAAAAAATTTTTTAGACCACTAGAATATCCCTATTGGATACTGTCATAATTTTCGCATTCGATATACTTCCCTCATTTCTGTTCACTCATTTTCCAGCTGTCAATTTTGAAACTGTTGGGCCATTGAGTGCGTTATGCAAGAACTTTGGATTTGTTATTGAGGCGATAATTATTTGTAAAGTTTTAATTGGGAAGAACGGAGTCGCGCCAATTAACACTAGTAAATACACACCAAACGCTTCTTAAGGATTATGTACTTTTGTAATGAATTCGTTGTTTTTTATTGTTTCGCACAATTTGAATTTTTCCGGTCGAAGATTTCTTACACGGGATCATGATTTTTTGGTCCGTCGTTTTTTTTTGGTTTGTGTTTTTTTCCTGTGCTTCTTAGATTAGATTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCCTCACGAGGAGCGCTTAATAAGTTAAAAAAAGAAGAATAATGGAAAAGGGAGGAATTATATACAGTAAAATACATGTGTTAAAAATAAGGATAATAGCTAGTAGCGAGAAATAGAAGAATCAAGGAGATTTTCAAATTGGGACGGGGTGAGGAAATGGGGTACATTGGCAGTTATGACTTTATTAAAACGCCACCCAATACGTTCTCATTTTTGAGCTTAATTATTTCGGTTCTTATAAAATTTCACATAAAAAAATGTGAACTGATAAAATATTCATCGTATTATCAGCAACATTTTATCAGTTGACACCAGAGATGTCCGGATTCCGGATTCCGTGCTTTTTTTCATTCCGGATTCCGGATTCCGAATTCCGTGAAAAATATTTTTGTCCGGATTCCGTATTCAGAAAATGTGTTAATCTGCATGAATTCTCTGCCGTTTTTGAACTTCAGAGACTAATAATGCGAAAATAAAGCCCAAATGTGTTTTTTACATTTTTTTTCTGCCCATCGGA</canonical>
            <polymorphic>ACGCAATAATTGATACAAAAAATTGATGCAAAAAAAATTTTTTAGACCACTAGAATATCCCTATTGGATACTGTCATAATTTTCGCATTCGATATACTTCCCTCATTTCTGTTCACTCATTTTCCAGCTGTCAATTTTGAAACTGTTGGGCCATTGAGTGCGTTATGCAAGAACTTTGGATTTGTTATTGAGGCGATAATTATTTGTAAAGTTTTAATTGGGAAGAACGGAGTCGCGCCAATTAACACTAGTAAATACACACCAAACGCTTCTTAAGGATTATGTACTTTTGTAATGAATTCGTTGTTTTTTATTGTTTCGCACAATTTGAATTTTTCCGGTCGAAGATTTCTTACACGGGATCATGATTTTTTGGTCCGTCGTTTTTTTTTGGTTTGTGTTTTTTTCCTGTGCTTCTTAGATTAGATTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCCTCACGAGGAGCGCYTAATAAGTTAAAAAAAGAAGAATAATGGAAAAGGGAGGAATTATATACAGTAAAATACATGTGTTAAAAATAAGGATAATAGCTAGTAGCGAGAAATAGAAGAATCAAGGAGATTTTCAAATTGGGACGGGGTGAGGAAATGGGGTACATTGGCAGTTATGACTTTATTAAAACGCCACCCAATACGTTCTCATTTTTGAGCTTAATTATTTCGGTTCTTATAAAATTTCACATAAAAAAATGTGAACTGATAAAATATTCATCGTATTATCAGCAACATTTTATCAGTTGACACCAGAGATGTCCGGATTCCGGATTCCGTGCTTTTTTTCATTCCGGATTCCGGATTCCGAATTCCGTGAAAAATATTTTTGTCCGGATTCCGTATTCAGAAAATGTGTTAATCTGCATGAATTCTCTGCCGTTTTTGAACTTCAGAGACTAATAATGCGAAAATAAAGCCCAAATGTGTTTTTTACATTTTTTTTCTGCCCATCGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCGCT</site>
                <isoschizomers>
                    <enzyme>AfeI</enzyme>
                    <enzyme>Aor51HI</enzyme>
                    <enzyme>Eco47III</enzyme>
                    <enzyme>FunI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>227 214 198 104 99 56 35 31 28 8</canonical_bands>
                <polymorphic_bands>235 214 198 104 99 56 35 31 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTGTGCTTCTTAGATTAGATT</pcr_primer_p1>
		<pcr_primer_p2>CAAGTGTCAGAGAACGTATATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>739</pcr_amplicon_size>
		<canonical_amplicon>TCCTGTGCTTCTTAGATTAGATTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCCTCACGAGGAGCGCTTAATAAGTTAAAAAAAGAAGAATA</canonical_amplicon>
		<polymorphic_amplicon>TCCTGTGCTTCTTAGATTAGATTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCCTCACGAGGAGCGCYTAATAAGTTAAAAAAAGAAGAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38737</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>6311</contig_pos>
        <strand></strand>
        <context>aagttaaaaa[A/G]agaagaataa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATAAGAAAAAGGCAGCCCCCCTCACGAGGAGCGCTTAATAAGTTAAAAA</left_flank>
        <right_flank>AGAAGAATAATGGAAAAGGGAGGAATTATATACAGTAAAATACATGTGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAAATTGATGCAAAAAAAATTTTTTAGACCACTAGAATATCCCTATTGGATACTGTCATAATTTTCGCATTCGATATACTTCCCTCATTTCTGTTCACTCATTTTCCAGCTGTCAATTTTGAAACTGTTGGGCCATTGAGTGCGTTATGCAAGAACTTTGGATTTGTTATTGAGGCGATAATTATTTGTAAAGTTTTAATTGGGAAGAACGGAGTCGCGCCAATTAACACTAGTAAATACACACCAAACGCTTCTTAAGGATTATGTACTTTTGTAATGAATTCGTTGTTTTTTATTGTTTCGCACAATTTGAATTTTTCCGGTCGAAGATTTCTTACACGGGATCATGATTTTTTGGTCCGTCGTTTTTTTTTGGTTTGTGTTTTTTTCCTGTGCTTCTTAGATTAGATTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCCTCACGAGGAGCGCTTAATAAGTTAAAAAAAGAAGAATAATGGAAAAGGGAGGAATTATATACAGTAAAATACATGTGTTAAAAATAAGGATAATAGCTAGTAGCGAGAAATAGAAGAATCAAGGAGATTTTCAAATTGGGACGGGGTGAGGAAATGGGGTACATTGGCAGTTATGACTTTATTAAAACGCCACCCAATACGTTCTCATTTTTGAGCTTAATTATTTCGGTTCTTATAAAATTTCACATAAAAAAATGTGAACTGATAAAATATTCATCGTATTATCAGCAACATTTTATCAGTTGACACCAGAGATGTCCGGATTCCGGATTCCGTGCTTTTTTTCATTCCGGATTCCGGATTCCGAATTCCGTGAAAAATATTTTTGTCCGGATTCCGTATTCAGAAAATGTGTTAATCTGCATGAATTCTCTGCCGTTTTTGAACTTCAGAGACTAATAATGCGAAAATAAAGCCCAAATGTGTTTTTTACATTTTTTTTCTGCCCATCGGAGACCTCAAAATTCCC</canonical>
            <polymorphic>CAAAAAATTGATGCAAAAAAAATTTTTTAGACCACTAGAATATCCCTATTGGATACTGTCATAATTTTCGCATTCGATATACTTCCCTCATTTCTGTTCACTCATTTTCCAGCTGTCAATTTTGAAACTGTTGGGCCATTGAGTGCGTTATGCAAGAACTTTGGATTTGTTATTGAGGCGATAATTATTTGTAAAGTTTTAATTGGGAAGAACGGAGTCGCGCCAATTAACACTAGTAAATACACACCAAACGCTTCTTAAGGATTATGTACTTTTGTAATGAATTCGTTGTTTTTTATTGTTTCGCACAATTTGAATTTTTCCGGTCGAAGATTTCTTACACGGGATCATGATTTTTTGGTCCGTCGTTTTTTTTTGGTTTGTGTTTTTTTCCTGTGCTTCTTAGATTAGATTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCCTCACGAGGAGCGCTTAATAAGTTAAAAARAGAAGAATAATGGAAAAGGGAGGAATTATATACAGTAAAATACATGTGTTAAAAATAAGGATAATAGCTAGTAGCGAGAAATAGAAGAATCAAGGAGATTTTCAAATTGGGACGGGGTGAGGAAATGGGGTACATTGGCAGTTATGACTTTATTAAAACGCCACCCAATACGTTCTCATTTTTGAGCTTAATTATTTCGGTTCTTATAAAATTTCACATAAAAAAATGTGAACTGATAAAATATTCATCGTATTATCAGCAACATTTTATCAGTTGACACCAGAGATGTCCGGATTCCGGATTCCGTGCTTTTTTTCATTCCGGATTCCGGATTCCGAATTCCGTGAAAAATATTTTTGTCCGGATTCCGTATTCAGAAAATGTGTTAATCTGCATGAATTCTCTGCCGTTTTTGAACTTCAGAGACTAATAATGCGAAAATAAAGCCCAAATGTGTTTTTTACATTTTTTTTCTGCCCATCGGAGACCTCAAAATTCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTGTGCTTCTTAGATTAGATT</pcr_primer_p1>
		<pcr_primer_p2>CAAGTGTCAGAGAACGTATATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>739</pcr_amplicon_size>
		<canonical_amplicon>TCCTGTGCTTCTTAGATTAGATTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCCTCACGAGGAGCGCTTAATAAGTTAAAAAAAGAAGAATAATGGAAAAGGGAGGA</canonical_amplicon>
		<polymorphic_amplicon>TCCTGTGCTTCTTAGATTAGATTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCCTCACGAGGAGCGCTTAATAAGTTAAAAARAGAAGAATAATGGAAAAGGGAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38738</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>6404</contig_pos>
        <strand></strand>
        <context>agaagaatca[A/T]ggagattttc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATGTGTTAAAAATAAGGATAATAGCTAGTAGCGAGAAATAGAAGAATCA</left_flank>
        <right_flank>GGAGATTTTCAAATTGGGACGGGGTGAGGAAATGGGGTACATTGGCAGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTTCACTCATTTTCCAGCTGTCAATTTTGAAACTGTTGGGCCATTGAGTGCGTTATGCAAGAACTTTGGATTTGTTATTGAGGCGATAATTATTTGTAAAGTTTTAATTGGGAAGAACGGAGTCGCGCCAATTAACACTAGTAAATACACACCAAACGCTTCTTAAGGATTATGTACTTTTGTAATGAATTCGTTGTTTTTTATTGTTTCGCACAATTTGAATTTTTCCGGTCGAAGATTTCTTACACGGGATCATGATTTTTTGGTCCGTCGTTTTTTTTTGGTTTGTGTTTTTTTCCTGTGCTTCTTAGATTAGATTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCCTCACGAGGAGCGCTTAATAAGTTAAAAAAAGAAGAATAATGGAAAAGGGAGGAATTATATACAGTAAAATACATGTGTTAAAAATAAGGATAATAGCTAGTAGCGAGAAATAGAAGAATCAAGGAGATTTTCAAATTGGGACGGGGTGAGGAAATGGGGTACATTGGCAGTTATGACTTTATTAAAACGCCACCCAATACGTTCTCATTTTTGAGCTTAATTATTTCGGTTCTTATAAAATTTCACATAAAAAAATGTGAACTGATAAAATATTCATCGTATTATCAGCAACATTTTATCAGTTGACACCAGAGATGTCCGGATTCCGGATTCCGTGCTTTTTTTCATTCCGGATTCCGGATTCCGAATTCCGTGAAAAATATTTTTGTCCGGATTCCGTATTCAGAAAATGTGTTAATCTGCATGAATTCTCTGCCGTTTTTGAACTTCAGAGACTAATAATGCGAAAATAAAGCCCAAATGTGTTTTTTACATTTTTTTTCTGCCCATCGGAGACCTCAAAATTCCCAATTCCGGATCTCGGGAAAATTATTTTATTTCAGATTCCAGTTTCCGGATTCCGTTTCTCAAAAATAGTCATTCCGTACATCTCTGGTTGACA</canonical>
            <polymorphic>CTGTTCACTCATTTTCCAGCTGTCAATTTTGAAACTGTTGGGCCATTGAGTGCGTTATGCAAGAACTTTGGATTTGTTATTGAGGCGATAATTATTTGTAAAGTTTTAATTGGGAAGAACGGAGTCGCGCCAATTAACACTAGTAAATACACACCAAACGCTTCTTAAGGATTATGTACTTTTGTAATGAATTCGTTGTTTTTTATTGTTTCGCACAATTTGAATTTTTCCGGTCGAAGATTTCTTACACGGGATCATGATTTTTTGGTCCGTCGTTTTTTTTTGGTTTGTGTTTTTTTCCTGTGCTTCTTAGATTAGATTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCCTCACGAGGAGCGCTTAATAAGTTAAAAAAAGAAGAATAATGGAAAAGGGAGGAATTATATACAGTAAAATACATGTGTTAAAAATAAGGATAATAGCTAGTAGCGAGAAATAGAAGAATCAWGGAGATTTTCAAATTGGGACGGGGTGAGGAAATGGGGTACATTGGCAGTTATGACTTTATTAAAACGCCACCCAATACGTTCTCATTTTTGAGCTTAATTATTTCGGTTCTTATAAAATTTCACATAAAAAAATGTGAACTGATAAAATATTCATCGTATTATCAGCAACATTTTATCAGTTGACACCAGAGATGTCCGGATTCCGGATTCCGTGCTTTTTTTCATTCCGGATTCCGGATTCCGAATTCCGTGAAAAATATTTTTGTCCGGATTCCGTATTCAGAAAATGTGTTAATCTGCATGAATTCTCTGCCGTTTTTGAACTTCAGAGACTAATAATGCGAAAATAAAGCCCAAATGTGTTTTTTACATTTTTTTTCTGCCCATCGGAGACCTCAAAATTCCCAATTCCGGATCTCGGGAAAATTATTTTATTTCAGATTCCAGTTTCCGGATTCCGTTTCTCAAAAATAGTCATTCCGTACATCTCTGGTTGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCTGTGCTTCTTAGATTAGATT</pcr_primer_p1>
		<pcr_primer_p2>CAAGTGTCAGAGAACGTATATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>739</pcr_amplicon_size>
		<canonical_amplicon>TCCTGTGCTTCTTAGATTAGATTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCCTCACGAGGAGCGCTTAATAAGTTAAAAAAAGAAGAATAATGGAAAAGGGAGGAATTATATACAGTAAAATACATGTGTTAAAAATAAGGATAATAGCTAGTAGCGAGAAATAGAAGAATCAAGGAGATTTTCAAATTGGGACGGGG</canonical_amplicon>
		<polymorphic_amplicon>TCCTGTGCTTCTTAGATTAGATTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCCTCACGAGGAGCGCTTAATAAGTTAAAAAAAGAAGAATAATGGAAAAGGGAGGAATTATATACAGTAAAATACATGTGTTAAAAATAAGGATAATAGCTAGTAGCGAGAAATAGAAGAATCAWGGAGATTTTCAAATTGGGACGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38739</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>6500</contig_pos>
        <strand></strand>
        <context>tttttgagct[T/C]aattatttcg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAGTTATGACTTTATTAAAACGCCACCCAATACGTTCTCATTTTTGAGCT</left_flank>
        <right_flank>AATTATTTCGGTTCTTATAAAATTTCACATAAAAAAATGTGAACTGATAA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTAAAGTTTTAATTGGGAAGAACGGAGTCGCGCCAATTAACACTAGTAAATACACACCAAACGCTTCTTAAGGATTATGTACTTTTGTAATGAATTCGTTGTTTTTTATTGTTTCGCACAATTTGAATTTTTCCGGTCGAAGATTTCTTACACGGGATCATGATTTTTTGGTCCGTCGTTTTTTTTTGGTTTGTGTTTTTTTCCTGTGCTTCTTAGATTAGATTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCCTCACGAGGAGCGCTTAATAAGTTAAAAAAAGAAGAATAATGGAAAAGGGAGGAATTATATACAGTAAAATACATGTGTTAAAAATAAGGATAATAGCTAGTAGCGAGAAATAGAAGAATCAAGGAGATTTTCAAATTGGGACGGGGTGAGGAAATGGGGTACATTGGCAGTTATGACTTTATTAAAACGCCACCCAATACGTTCTCATTTTTGAGCTTAATTATTTCGGTTCTTATAAAATTTCACATAAAAAAATGTGAACTGATAAAATATTCATCGTATTATCAGCAACATTTTATCAGTTGACACCAGAGATGTCCGGATTCCGGATTCCGTGCTTTTTTTCATTCCGGATTCCGGATTCCGAATTCCGTGAAAAATATTTTTGTCCGGATTCCGTATTCAGAAAATGTGTTAATCTGCATGAATTCTCTGCCGTTTTTGAACTTCAGAGACTAATAATGCGAAAATAAAGCCCAAATGTGTTTTTTACATTTTTTTTCTGCCCATCGGAGACCTCAAAATTCCCAATTCCGGATCTCGGGAAAATTATTTTATTTCAGATTCCAGTTTCCGGATTCCGTTTCTCAAAAATAGTCATTCCGTACATCTCTGGTTGACACATTTTTGTTTAAAAAATATACGTTCTCTGACACTTGTATCTTTCGCTCCATTCGAATGATTCGTTCGTCGCGTTGCTGGAAATTTGAATGAACAT</canonical>
            <polymorphic>TGTAAAGTTTTAATTGGGAAGAACGGAGTCGCGCCAATTAACACTAGTAAATACACACCAAACGCTTCTTAAGGATTATGTACTTTTGTAATGAATTCGTTGTTTTTTATTGTTTCGCACAATTTGAATTTTTCCGGTCGAAGATTTCTTACACGGGATCATGATTTTTTGGTCCGTCGTTTTTTTTTGGTTTGTGTTTTTTTCCTGTGCTTCTTAGATTAGATTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCCTCACGAGGAGCGCTTAATAAGTTAAAAAAAGAAGAATAATGGAAAAGGGAGGAATTATATACAGTAAAATACATGTGTTAAAAATAAGGATAATAGCTAGTAGCGAGAAATAGAAGAATCAAGGAGATTTTCAAATTGGGACGGGGTGAGGAAATGGGGTACATTGGCAGTTATGACTTTATTAAAACGCCACCCAATACGTTCTCATTTTTGAGCTYAATTATTTCGGTTCTTATAAAATTTCACATAAAAAAATGTGAACTGATAAAATATTCATCGTATTATCAGCAACATTTTATCAGTTGACACCAGAGATGTCCGGATTCCGGATTCCGTGCTTTTTTTCATTCCGGATTCCGGATTCCGAATTCCGTGAAAAATATTTTTGTCCGGATTCCGTATTCAGAAAATGTGTTAATCTGCATGAATTCTCTGCCGTTTTTGAACTTCAGAGACTAATAATGCGAAAATAAAGCCCAAATGTGTTTTTTACATTTTTTTTCTGCCCATCGGAGACCTCAAAATTCCCAATTCCGGATCTCGGGAAAATTATTTTATTTCAGATTCCAGTTTCCGGATTCCGTTTCTCAAAAATAGTCATTCCGTACATCTCTGGTTGACACATTTTTGTTTAAAAAATATACGTTCTCTGACACTTGTATCTTTCGCTCCATTCGAATGATTCGTTCGTCGCGTTGCTGGAAATTTGAATGAACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>227 217 198 104 86 56 35 31 28 10 8</canonical_bands>
                <polymorphic_bands>233 227 217 104 86 56 31 28 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCTGTGCTTCTTAGATTAGATT</pcr_primer_p1>
		<pcr_primer_p2>CAAGTGTCAGAGAACGTATATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>739</pcr_amplicon_size>
		<canonical_amplicon>TCCTGTGCTTCTTAGATTAGATTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCCTCACGAGGAGCGCTTAATAAGTTAAAAAAAGAAGAATAATGGAAAAGGGAGGAATTATATACAGTAAAATACATGTGTTAAAAATAAGGATAATAGCTAGTAGCGAGAAATAGAAGAATCAAGGAGATTTTCAAATTGGGACGGGGTGAGGAAATGGGGTACATTGGCAGTTATGACTTTATTAAAACGCCACCCAATACGTTCTCATTTTTGAGCTTAATTATTTCGGTTCTTATAAAATTTCACATAAAAAAATGTGAACTGATAAAATATTCATCGTATTATCAGCAACATTTTATCAGTTGACACCAGAGATGTCCGGATTCCGGATTCCGTGCTTTTTTTCATTCCGGATTCCGGATTCCGAATTCCGTGAAAAATATTTTTGTCCGGATTCCGTATTCAGAAAATGTGTTAATCTGCATGAATTCTCTGCCGTTTTTGAACTTCAGAGACTAATAATGCGAAAATAAAGCCCAAATGTGTTTTTTACATTTTTTTTCTGCCCATCGGAGACCTCAAAATTCCCAATTCCGGATCTCGGGAAAATTATTTTATTTCAGATTCCAGTTTCCGGATTCCGTTTCTCAAAAATAGTCATTCCGTACATCTCTGGTTGACACATTTTTGTTTAAAAAATATACGTTCTCTGACACTTG</canonical_amplicon>
		<polymorphic_amplicon>TCCTGTGCTTCTTAGATTAGATTAGATTTATTTATTTTCAGAGCGGTGACAAACGGTACATAAGAAAAAGGCAGCCCCCCTCACGAGGAGCGCTTAATAAGTTAAAAAAAGAAGAATAATGGAAAAGGGAGGAATTATATACAGTAAAATACATGTGTTAAAAATAAGGATAATAGCTAGTAGCGAGAAATAGAAGAATCAAGGAGATTTTCAAATTGGGACGGGGTGAGGAAATGGGGTACATTGGCAGTTATGACTTTATTAAAACGCCACCCAATACGTTCTCATTTTTGAGCTYAATTATTTCGGTTCTTATAAAATTTCACATAAAAAAATGTGAACTGATAAAATATTCATCGTATTATCAGCAACATTTTATCAGTTGACACCAGAGATGTCCGGATTCCGGATTCCGTGCTTTTTTTCATTCCGGATTCCGGATTCCGAATTCCGTGAAAAATATTTTTGTCCGGATTCCGTATTCAGAAAATGTGTTAATCTGCATGAATTCTCTGCCGTTTTTGAACTTCAGAGACTAATAATGCGAAAATAAAGCCCAAATGTGTTTTTTACATTTTTTTTCTGCCCATCGGAGACCTCAAAATTCCCAATTCCGGATCTCGGGAAAATTATTTTATTTCAGATTCCAGTTTCCGGATTCCGTTTCTCAAAAATAGTCATTCCGTACATCTCTGGTTGACACATTTTTGTTTAAAAAATATACGTTCTCTGACACTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38740</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>10292</contig_pos>
        <strand>+</strand>
        <context>ACAGTAATCT[C/T]AGAATYTCTW</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCAATTTGGCAGACTTATGAGTATCAATCGGGTAATCCACAGTAATCT</left_flank>
        <right_flank>AGAATTTCTTGTATAAGGTTATTTTTTCAGAAAATCCGAGTTGGAAGTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATATTCCAGAGTCTTCCAACATGGTTCTGACCTATTTCTCTACTTTTCGCATATTCCAATTTGTGAAAAAGTTCCCAGTATCCAGAGGTACCTTTTTGACAACCACCCCTTCAAAATTTGGAGTCTAAATTTACCAATTTCCAGATGTCTCTCCACGCGAATCCCCTACATTTTCGGATTATTCTGCGCCAGCTACTCGACGGTTTTCATGGTTATCGAGCGAACGATAGCAACAAAAAGCTACAAAAAATACGAAAATCGTCACAAAACGTTGGGTTGCATGCTTATCCTGGGACAAATCTTCATGGGCGGCGCGACCACTTTTGCGATTTTTTACAAATTCGATTTTCAAAACGCGCAAGAGTTTTGCACGGGAAGCCAATCTTCGGATCCCTATTTTCTGATCATACCGGAGGCAGTTGCAATTTTGTCAAATGTTCTTGCATTTTTCCAATTTGGCAGACTTATGAGTATCAATCGGGTAATCCACAGTAATCTCAGAATTTCTTGTATAAGGTTATTTTTTCAGAAAATCCGAGTTGGAAGTAGCTCAAACAACTTGAGCCAGAAGTATCAAATCGAGGAAAATTTGAATGTTGTGAATATTTTAAGAGCGTTTACGAAGTGTGATTTTATATTTATTTTGATTTATTTCACAATGGGAATTCCGTTTCATTTGATTGGAAAGCATATGGATTCGGCAGAGTATTATGCTCTTTTTGAAGGTGAGCTCAGTTATTTAGGTCCTGCATTTTTGATAATTCGACCACAAGCTCAAGGGCAGAAAACCAAAGAAATGCAATTTTAAGAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGAAAGTTTGGAGTTGCCGAATTTTTGGGAATTTGAGTTTTCAGAGTTTTTTTTTGGGAAGTTTTGAATATTTTGATTTTTTGATTTTTATGTTACCGTAAAACCTGTAATAGAAGTGCCTCCTGACTTTCAACTTTGAGCTCAATTATCTCGGTTCC</canonical>
            <polymorphic>GATATTCCAGAGTCTTCCAACATGGTTCTGACCTATTTCTCTACTTTTCGCATATTCCAATTTGTGAAAAAGTTCCCAGTATCCAGAGGTACCTTTTTGACAACCACCCCTTCAAAATTTGGAGTCTAAATTTACCAATTTCCAGATGTCTCTCCACGCGAATCCCCTACATTTTCGGATTATTCTGCGCCAGCTACTCGACGGTTTTCATGGTTATCGAGCGAACGATAGCAACAAAAAGCTACAAAAAATACGAAAATCGTCACAAAACGTTGGGTTGCATGCTTATCCTGGGACAAATCTTCATGGGCGGCGCGACCACTTTTGCGATTTTTTACAAATTCGATTTTCAAAACGCGCAAGAGTTTTGCACGGGAAGCCAATCTTCGGATCCCTATTTTCTGATCATACCGGAGGCAGTTGCAATTTTGTCAAATGTTCTTGCATTTTTCCAATTTGGCAGACTTATGAGTATCAATCGGGTAATCCACAGTAATCTYAGAATTTCTTGTATAAGGTTATTTTTTCAGAAAATCCGAGTTGGAAGTAGCTCAAACAACTTGAGCCAGAAGTATCAAATCGAGGAAAATTTGAATGTTGTGAATATTTTAAGAGCGTTTACGAAGTGTGATTTTATATTTATTTTGATTTATTTCACAATGGGAATTCCGTTTCATTTGATTGGAAAGCATATGGATTCGGCAGAGTATTATGCTCTTTTTGAAGGTGAGCTCAGTTATTTAGGTCCTGCATTTTTGATAATTCGACCACAAGCTCAAGGGCAGAAAACCAAAGAAATGCAATTTTAAGAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGAAAGTTTGGAGTTGCCGAATTTTTGGGAATTTGAGTTTTCAGAGTTTTTTTTTGGGAAGTTTTGAATATTTTGATTTTTTGATTTTTATGTTACCGTAAAACCTGTAATAGAAGTGCCTCCTGACTTTCAACTTTGAGCTCAATTATCTCGGTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>348 212 148 115 98 29 28 14 8</canonical_bands>
                <polymorphic_bands>348 212 148 126 115 29 14 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCCCTATTTTCTGATCATACC</pcr_primer_p1>
		<pcr_primer_p2>ACTTCGTAAACGCTCTTAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>GATCCCTATTTTCTGATCATACCGGAGGCAGTTGCAATTTTGTCAAATGTTCTTGCATTTTTCCAATTTGGCAGACTTATGAGTATCAATCGGGTAATCCACAGTAATCTCAGAATTTCTTGTATAAGGTTATTTTTTCAGAAAATCCGAGTTGGAAGTAGCTCAAACAACTTGAGCCAGAAGTATCAAATCGAGGAAAATTTGAATGTTGTGAATATTTTAAGAGCGTTTACGAAGT</canonical_amplicon>
		<polymorphic_amplicon>GATCCCTATTTTCTGATCATACCGGAGGCAGTTGCAATTTTGTCAAATGTTCTTGCATTTTTCCAATTTGGCAGACTTATGAGTATCAATCGGGTAATCCACAGTAATCTYAGAATTTCTTGTATAAGGTTATTTTTTCAGAAAATCCGAGTTGGAAGTAGCTCAAACAACTTGAGCCAGAAGTATCAAATCGAGGAAAATTTGAATGTTGTGAATATTTTAAGAGCGTTTACGAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38741</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>10298</contig_pos>
        <strand>+</strand>
        <context>ATCTYAGAAT[C/T]TCTWGTATAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTGGCAGACTTATGAGTATCAATCGGGTAATCCACAGTAATCTCAGAAT</left_flank>
        <right_flank>TCTTGTATAAGGTTATTTTTTCAGAAAATCCGAGTTGGAAGTAGCTCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGAGTCTTCCAACATGGTTCTGACCTATTTCTCTACTTTTCGCATATTCCAATTTGTGAAAAAGTTCCCAGTATCCAGAGGTACCTTTTTGACAACCACCCCTTCAAAATTTGGAGTCTAAATTTACCAATTTCCAGATGTCTCTCCACGCGAATCCCCTACATTTTCGGATTATTCTGCGCCAGCTACTCGACGGTTTTCATGGTTATCGAGCGAACGATAGCAACAAAAAGCTACAAAAAATACGAAAATCGTCACAAAACGTTGGGTTGCATGCTTATCCTGGGACAAATCTTCATGGGCGGCGCGACCACTTTTGCGATTTTTTACAAATTCGATTTTCAAAACGCGCAAGAGTTTTGCACGGGAAGCCAATCTTCGGATCCCTATTTTCTGATCATACCGGAGGCAGTTGCAATTTTGTCAAATGTTCTTGCATTTTTCCAATTTGGCAGACTTATGAGTATCAATCGGGTAATCCACAGTAATCTCAGAATTTCTTGTATAAGGTTATTTTTTCAGAAAATCCGAGTTGGAAGTAGCTCAAACAACTTGAGCCAGAAGTATCAAATCGAGGAAAATTTGAATGTTGTGAATATTTTAAGAGCGTTTACGAAGTGTGATTTTATATTTATTTTGATTTATTTCACAATGGGAATTCCGTTTCATTTGATTGGAAAGCATATGGATTCGGCAGAGTATTATGCTCTTTTTGAAGGTGAGCTCAGTTATTTAGGTCCTGCATTTTTGATAATTCGACCACAAGCTCAAGGGCAGAAAACCAAAGAAATGCAATTTTAAGAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGAAAGTTTGGAGTTGCCGAATTTTTGGGAATTTGAGTTTTCAGAGTTTTTTTTTGGGAAGTTTTGAATATTTTGATTTTTTGATTTTTATGTTACCGTAAAACCTGTAATAGAAGTGCCTCCTGACTTTCAACTTTGAGCTCAATTATCTCGGTTCCTGATAA</canonical>
            <polymorphic>CCAGAGTCTTCCAACATGGTTCTGACCTATTTCTCTACTTTTCGCATATTCCAATTTGTGAAAAAGTTCCCAGTATCCAGAGGTACCTTTTTGACAACCACCCCTTCAAAATTTGGAGTCTAAATTTACCAATTTCCAGATGTCTCTCCACGCGAATCCCCTACATTTTCGGATTATTCTGCGCCAGCTACTCGACGGTTTTCATGGTTATCGAGCGAACGATAGCAACAAAAAGCTACAAAAAATACGAAAATCGTCACAAAACGTTGGGTTGCATGCTTATCCTGGGACAAATCTTCATGGGCGGCGCGACCACTTTTGCGATTTTTTACAAATTCGATTTTCAAAACGCGCAAGAGTTTTGCACGGGAAGCCAATCTTCGGATCCCTATTTTCTGATCATACCGGAGGCAGTTGCAATTTTGTCAAATGTTCTTGCATTTTTCCAATTTGGCAGACTTATGAGTATCAATCGGGTAATCCACAGTAATCTCAGAATYTCTTGTATAAGGTTATTTTTTCAGAAAATCCGAGTTGGAAGTAGCTCAAACAACTTGAGCCAGAAGTATCAAATCGAGGAAAATTTGAATGTTGTGAATATTTTAAGAGCGTTTACGAAGTGTGATTTTATATTTATTTTGATTTATTTCACAATGGGAATTCCGTTTCATTTGATTGGAAAGCATATGGATTCGGCAGAGTATTATGCTCTTTTTGAAGGTGAGCTCAGTTATTTAGGTCCTGCATTTTTGATAATTCGACCACAAGCTCAAGGGCAGAAAACCAAAGAAATGCAATTTTAAGAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGAAAGTTTGGAGTTGCCGAATTTTTGGGAATTTGAGTTTTCAGAGTTTTTTTTTGGGAAGTTTTGAATATTTTGATTTTTTGATTTTTATGTTACCGTAAAACCTGTAATAGAAGTGCCTCCTGACTTTCAACTTTGAGCTCAATTATCTCGGTTCCTGATAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>211 163 147 135 109 85 77 25 25 13 10</canonical_bands>
                <polymorphic_bands>248 211 147 135 109 77 25 25 13 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>203 114 96 85 85 77 57 52 49 41 29 25 25 21 13 10 10 8</canonical_bands>
                <polymorphic_bands>203 134 114 96 85 77 57 52 41 29 25 25 21 13 10 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCCCTATTTTCTGATCATACC</pcr_primer_p1>
		<pcr_primer_p2>ACTTCGTAAACGCTCTTAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>GATCCCTATTTTCTGATCATACCGGAGGCAGTTGCAATTTTGTCAAATGTTCTTGCATTTTTCCAATTTGGCAGACTTATGAGTATCAATCGGGTAATCCACAGTAATCTCAGAATTTCTTGTATAAGGTTATTTTTTCAGAAAATCCGAGTTGGAAGTAGCTCAAACAACTTGAGCCAGAAGTATCAAATCGAGGAAAATTTGAATGTTGTGAATATTTTAAGAGCGTTTACGAAGT</canonical_amplicon>
		<polymorphic_amplicon>GATCCCTATTTTCTGATCATACCGGAGGCAGTTGCAATTTTGTCAAATGTTCTTGCATTTTTCCAATTTGGCAGACTTATGAGTATCAATCGGGTAATCCACAGTAATCTCAGAATYTCTTGTATAAGGTTATTTTTTCAGAAAATCCGAGTTGGAAGTAGCTCAAACAACTTGAGCCAGAAGTATCAAATCGAGGAAAATTTGAATGTTGTGAATATTTTAAGAGCGTTTACGAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38742</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>10726</contig_pos>
        <strand></strand>
        <context>TGATTTTTAT[G/T]TTaccgtaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAGAGTTTTTTTTTGGGAAGTTTTGAATATTTTGATTTTTTGATTTTTAT</left_flank>
        <right_flank>TTACCGTAAAACCTGTAATAGAAGTGCCTCCTGACTTTCAACTTTGAGCT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGTTCTTGCATTTTTCCAATTTGGCAGACTTATGAGTATCAATCGGGTAATCCACAGTAATCTCAGAATTTCTTGTATAAGGTTATTTTTTCAGAAAATCCGAGTTGGAAGTAGCTCAAACAACTTGAGCCAGAAGTATCAAATCGAGGAAAATTTGAATGTTGTGAATATTTTAAGAGCGTTTACGAAGTGTGATTTTATATTTATTTTGATTTATTTCACAATGGGAATTCCGTTTCATTTGATTGGAAAGCATATGGATTCGGCAGAGTATTATGCTCTTTTTGAAGGTGAGCTCAGTTATTTAGGTCCTGCATTTTTGATAATTCGACCACAAGCTCAAGGGCAGAAAACCAAAGAAATGCAATTTTAAGAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGAAAGTTTGGAGTTGCCGAATTTTTGGGAATTTGAGTTTTCAGAGTTTTTTTTTGGGAAGTTTTGAATATTTTGATTTTTTGATTTTTATGTTACCGTAAAACCTGTAATAGAAGTGCCTCCTGACTTTCAACTTTGAGCTCAATTATCTCGGTTCCTGATAAAGATATCAAAAATGTGTCAACTGATAAATTGTTTATCATGATAGCAGCAACAATTTATTAGTTGACACATTTTTTACATCTTTATCAGGAACCGAGATAAATGGGCTCAAAGTTGAAAGTCAGGGGGCACTTCTATTACAGGTTTTACGGTAATTCAAACGTTTTTTTTTTAAATTTTCATAGTTTTCGATTTTGGAAGAAATTTTCAGAAATTTTTAGTGTATTTTTCAGATATTCTAAACCTGAATTTCAAAAATTTTGGAATCGAAATTTCAGGAATTTTTAGAAAATTTTGAATTTACCTCTCCTATTTTTTTGATGTTTGGAGTTTCGGATTTTTCGAAAATTTCGATTTTTTGAAAATTTTTAGAATTTTGCAATTTGAAACTTTCGGAGCATTTGGAACTTTTGAAACTTCCAAATCGTTC</canonical>
            <polymorphic>AATGTTCTTGCATTTTTCCAATTTGGCAGACTTATGAGTATCAATCGGGTAATCCACAGTAATCTCAGAATTTCTTGTATAAGGTTATTTTTTCAGAAAATCCGAGTTGGAAGTAGCTCAAACAACTTGAGCCAGAAGTATCAAATCGAGGAAAATTTGAATGTTGTGAATATTTTAAGAGCGTTTACGAAGTGTGATTTTATATTTATTTTGATTTATTTCACAATGGGAATTCCGTTTCATTTGATTGGAAAGCATATGGATTCGGCAGAGTATTATGCTCTTTTTGAAGGTGAGCTCAGTTATTTAGGTCCTGCATTTTTGATAATTCGACCACAAGCTCAAGGGCAGAAAACCAAAGAAATGCAATTTTAAGAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGAAAGTTTGGAGTTGCCGAATTTTTGGGAATTTGAGTTTTCAGAGTTTTTTTTTGGGAAGTTTTGAATATTTTGATTTTTTGATTTTTATKTTACCGTAAAACCTGTAATAGAAGTGCCTCCTGACTTTCAACTTTGAGCTCAATTATCTCGGTTCCTGATAAAGATATCAAAAATGTGTCAACTGATAAATTGTTTATCATGATAGCAGCAACAATTTATTAGTTGACACATTTTTTACATCTTTATCAGGAACCGAGATAAATGGGCTCAAAGTTGAAAGTCAGGGGGCACTTCTATTACAGGTTTTACGGTAATTCAAACGTTTTTTTTTTAAATTTTCATAGTTTTCGATTTTGGAAGAAATTTTCAGAAATTTTTAGTGTATTTTTCAGATATTCTAAACCTGAATTTCAAAAATTTTGGAATCGAAATTTCAGGAATTTTTAGAAAATTTTGAATTTACCTCTCCTATTTTTTTGATGTTTGGAGTTTCGGATTTTTCGAAAATTTCGATTTTTTGAAAATTTTTAGAATTTTGCAATTTGAAACTTTCGGAGCATTTGGAACTTTTGAAACTTCCAAATCGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGGAATTTGAGTTTTCAG</pcr_primer_p1>
		<pcr_primer_p2>TCTTCCAAAATCGAAAACTATG</pcr_primer_p2>
		<pcr_amplicon_size>340</pcr_amplicon_size>
		<canonical_amplicon>TTGGGAATTTGAGTTTTCAGAGTTTTTTTTTGGGAAGTTTTGAATATTTTGATTTTTTGATTTTTATGTTACCGTAAAACCTGTAATAGAAGTGCCTCCTGACTTTCAACTTTGAGCTCAATTATCTCGGTTCCTGATAAAGATATCAAAAATGTGTCAACTGATAAATTGTTTATCATGATAGCAGCAACAATTTATTAGTTGACACATTTTTTACATCTTTATCAGGAACCGAGATAAATGGGCTCAAAGTTGAAAGTCAGGGGGCACTTCTATTACAGGTTTTACGGTAATTCAAACGTTTTTTTTTTAAATTTTCATAGTTTTCGATTTTGGAAGA</canonical_amplicon>
		<polymorphic_amplicon>TTGGGAATTTGAGTTTTCAGAGTTTTTTTTTGGGAAGTTTTGAATATTTTGATTTTTTGATTTTTATKTTACCGTAAAACCTGTAATAGAAGTGCCTCCTGACTTTCAACTTTGAGCTCAATTATCTCGGTTCCTGATAAAGATATCAAAAATGTGTCAACTGATAAATTGTTTATCATGATAGCAGCAACAATTTATTAGTTGACACATTTTTTACATCTTTATCAGGAACCGAGATAAATGGGCTCAAAGTTGAAAGTCAGGGGGCACTTCTATTACAGGTTTTACGGTAATTCAAACGTTTTTTTTTTAAATTTTCATAGTTTTCGATTTTGGAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38743</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>10753</contig_pos>
        <strand></strand>
        <context>aatagaagtg[C/T]cycctgrctt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATTTTGATTTTTTGATTTTTATGTTACCGTAAAACCTGTAATAGAAGTG</left_flank>
        <right_flank>CTCCTGACTTTCAACTTTGAGCTCAATTATCTCGGTTCCTGATAAAGATA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACTTATGAGTATCAATCGGGTAATCCACAGTAATCTCAGAATTTCTTGTATAAGGTTATTTTTTCAGAAAATCCGAGTTGGAAGTAGCTCAAACAACTTGAGCCAGAAGTATCAAATCGAGGAAAATTTGAATGTTGTGAATATTTTAAGAGCGTTTACGAAGTGTGATTTTATATTTATTTTGATTTATTTCACAATGGGAATTCCGTTTCATTTGATTGGAAAGCATATGGATTCGGCAGAGTATTATGCTCTTTTTGAAGGTGAGCTCAGTTATTTAGGTCCTGCATTTTTGATAATTCGACCACAAGCTCAAGGGCAGAAAACCAAAGAAATGCAATTTTAAGAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGAAAGTTTGGAGTTGCCGAATTTTTGGGAATTTGAGTTTTCAGAGTTTTTTTTTGGGAAGTTTTGAATATTTTGATTTTTTGATTTTTATGTTACCGTAAAACCTGTAATAGAAGTGCCTCCTGACTTTCAACTTTGAGCTCAATTATCTCGGTTCCTGATAAAGATATCAAAAATGTGTCAACTGATAAATTGTTTATCATGATAGCAGCAACAATTTATTAGTTGACACATTTTTTACATCTTTATCAGGAACCGAGATAAATGGGCTCAAAGTTGAAAGTCAGGGGGCACTTCTATTACAGGTTTTACGGTAATTCAAACGTTTTTTTTTTAAATTTTCATAGTTTTCGATTTTGGAAGAAATTTTCAGAAATTTTTAGTGTATTTTTCAGATATTCTAAACCTGAATTTCAAAAATTTTGGAATCGAAATTTCAGGAATTTTTAGAAAATTTTGAATTTACCTCTCCTATTTTTTTGATGTTTGGAGTTTCGGATTTTTCGAAAATTTCGATTTTTTGAAAATTTTTAGAATTTTGCAATTTGAAACTTTCGGAGCATTTGGAACTTTTGAAACTTCCAAATCGTTCGAATTTTCGATTTTTTGGATATTTGAA</canonical>
            <polymorphic>AGACTTATGAGTATCAATCGGGTAATCCACAGTAATCTCAGAATTTCTTGTATAAGGTTATTTTTTCAGAAAATCCGAGTTGGAAGTAGCTCAAACAACTTGAGCCAGAAGTATCAAATCGAGGAAAATTTGAATGTTGTGAATATTTTAAGAGCGTTTACGAAGTGTGATTTTATATTTATTTTGATTTATTTCACAATGGGAATTCCGTTTCATTTGATTGGAAAGCATATGGATTCGGCAGAGTATTATGCTCTTTTTGAAGGTGAGCTCAGTTATTTAGGTCCTGCATTTTTGATAATTCGACCACAAGCTCAAGGGCAGAAAACCAAAGAAATGCAATTTTAAGAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGAAAGTTTGGAGTTGCCGAATTTTTGGGAATTTGAGTTTTCAGAGTTTTTTTTTGGGAAGTTTTGAATATTTTGATTTTTTGATTTTTATGTTACCGTAAAACCTGTAATAGAAGTGYCTCCTGACTTTCAACTTTGAGCTCAATTATCTCGGTTCCTGATAAAGATATCAAAAATGTGTCAACTGATAAATTGTTTATCATGATAGCAGCAACAATTTATTAGTTGACACATTTTTTACATCTTTATCAGGAACCGAGATAAATGGGCTCAAAGTTGAAAGTCAGGGGGCACTTCTATTACAGGTTTTACGGTAATTCAAACGTTTTTTTTTTAAATTTTCATAGTTTTCGATTTTGGAAGAAATTTTCAGAAATTTTTAGTGTATTTTTCAGATATTCTAAACCTGAATTTCAAAAATTTTGGAATCGAAATTTCAGGAATTTTTAGAAAATTTTGAATTTACCTCTCCTATTTTTTTGATGTTTGGAGTTTCGGATTTTTCGAAAATTTCGATTTTTTGAAAATTTTTAGAATTTTGCAATTTGAAACTTTCGGAGCATTTGGAACTTTTGAAACTTCCAAATCGTTCGAATTTTCGATTTTTTGGATATTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGAAGTTTTGAATATTTTGATT</pcr_primer_p1>
		<pcr_primer_p2>TTCTGAAAATTTCTTCCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>GGGAAGTTTTGAATATTTTGATTTTTTGATTTTTATGTTACCGTAAAACCTGTAATAGAAGTGCCTCCTGACTTTCAACTTTGAGCTCAATTATCTCGGTTCCTGATAAAGATATCAAAAATGTGTCAACTGATAAATTGTTTATCATGATAGCAGCAACAATTTATTAGTTGACACATTTTTTACATCTTTATCAGGAACCGAGATAAATGGGCTCAAAGTTGAAAGTCAGGGGGCACTTCTATTACAGGTTTTACGGTAATTCAAACGTTTTTTTTTTAAATTTTCATAGTTTTCGATTTTGGAAGAAATTTTCAGAA</canonical_amplicon>
		<polymorphic_amplicon>GGGAAGTTTTGAATATTTTGATTTTTTGATTTTTATGTTACCGTAAAACCTGTAATAGAAGTGYCTCCTGACTTTCAACTTTGAGCTCAATTATCTCGGTTCCTGATAAAGATATCAAAAATGTGTCAACTGATAAATTGTTTATCATGATAGCAGCAACAATTTATTAGTTGACACATTTTTTACATCTTTATCAGGAACCGAGATAAATGGGCTCAAAGTTGAAAGTCAGGGGGCACTTCTATTACAGGTTTTACGGTAATTCAAACGTTTTTTTTTTAAATTTTCATAGTTTTCGATTTTGGAAGAAATTTTCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38744</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>10755</contig_pos>
        <strand></strand>
        <context>tagaagtgyc[T/C]cctgrctttc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTTGATTTTTTGATTTTTATGTTACCGTAAAACCTGTAATAGAAGTGCC</left_flank>
        <right_flank>CCTGACTTTCAACTTTGAGCTCAATTATCTCGGTTCCTGATAAAGATATC</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTATGAGTATCAATCGGGTAATCCACAGTAATCTCAGAATTTCTTGTATAAGGTTATTTTTTCAGAAAATCCGAGTTGGAAGTAGCTCAAACAACTTGAGCCAGAAGTATCAAATCGAGGAAAATTTGAATGTTGTGAATATTTTAAGAGCGTTTACGAAGTGTGATTTTATATTTATTTTGATTTATTTCACAATGGGAATTCCGTTTCATTTGATTGGAAAGCATATGGATTCGGCAGAGTATTATGCTCTTTTTGAAGGTGAGCTCAGTTATTTAGGTCCTGCATTTTTGATAATTCGACCACAAGCTCAAGGGCAGAAAACCAAAGAAATGCAATTTTAAGAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGAAAGTTTGGAGTTGCCGAATTTTTGGGAATTTGAGTTTTCAGAGTTTTTTTTTGGGAAGTTTTGAATATTTTGATTTTTTGATTTTTATGTTACCGTAAAACCTGTAATAGAAGTGCCTCCTGACTTTCAACTTTGAGCTCAATTATCTCGGTTCCTGATAAAGATATCAAAAATGTGTCAACTGATAAATTGTTTATCATGATAGCAGCAACAATTTATTAGTTGACACATTTTTTACATCTTTATCAGGAACCGAGATAAATGGGCTCAAAGTTGAAAGTCAGGGGGCACTTCTATTACAGGTTTTACGGTAATTCAAACGTTTTTTTTTTAAATTTTCATAGTTTTCGATTTTGGAAGAAATTTTCAGAAATTTTTAGTGTATTTTTCAGATATTCTAAACCTGAATTTCAAAAATTTTGGAATCGAAATTTCAGGAATTTTTAGAAAATTTTGAATTTACCTCTCCTATTTTTTTGATGTTTGGAGTTTCGGATTTTTCGAAAATTTCGATTTTTTGAAAATTTTTAGAATTTTGCAATTTGAAACTTTCGGAGCATTTGGAACTTTTGAAACTTCCAAATCGTTCGAATTTTCGATTTTTTGGATATTTGAAAA</canonical>
            <polymorphic>ACTTATGAGTATCAATCGGGTAATCCACAGTAATCTCAGAATTTCTTGTATAAGGTTATTTTTTCAGAAAATCCGAGTTGGAAGTAGCTCAAACAACTTGAGCCAGAAGTATCAAATCGAGGAAAATTTGAATGTTGTGAATATTTTAAGAGCGTTTACGAAGTGTGATTTTATATTTATTTTGATTTATTTCACAATGGGAATTCCGTTTCATTTGATTGGAAAGCATATGGATTCGGCAGAGTATTATGCTCTTTTTGAAGGTGAGCTCAGTTATTTAGGTCCTGCATTTTTGATAATTCGACCACAAGCTCAAGGGCAGAAAACCAAAGAAATGCAATTTTAAGAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGAAAGTTTGGAGTTGCCGAATTTTTGGGAATTTGAGTTTTCAGAGTTTTTTTTTGGGAAGTTTTGAATATTTTGATTTTTTGATTTTTATGTTACCGTAAAACCTGTAATAGAAGTGCCYCCTGACTTTCAACTTTGAGCTCAATTATCTCGGTTCCTGATAAAGATATCAAAAATGTGTCAACTGATAAATTGTTTATCATGATAGCAGCAACAATTTATTAGTTGACACATTTTTTACATCTTTATCAGGAACCGAGATAAATGGGCTCAAAGTTGAAAGTCAGGGGGCACTTCTATTACAGGTTTTACGGTAATTCAAACGTTTTTTTTTTAAATTTTCATAGTTTTCGATTTTGGAAGAAATTTTCAGAAATTTTTAGTGTATTTTTCAGATATTCTAAACCTGAATTTCAAAAATTTTGGAATCGAAATTTCAGGAATTTTTAGAAAATTTTGAATTTACCTCTCCTATTTTTTTGATGTTTGGAGTTTCGGATTTTTCGAAAATTTCGATTTTTTGAAAATTTTTAGAATTTTGCAATTTGAAACTTTCGGAGCATTTGGAACTTTTGAAACTTCCAAATCGTTCGAATTTTCGATTTTTTGGATATTTGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>353 188 183 148 49 44 35</canonical_bands>
                <polymorphic_bands>353 188 183 183 49 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGAAGTTTTGAATATTTTGATT</pcr_primer_p1>
		<pcr_primer_p2>TTCTGAAAATTTCTTCCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>GGGAAGTTTTGAATATTTTGATTTTTTGATTTTTATGTTACCGTAAAACCTGTAATAGAAGTGCCTCCTGACTTTCAACTTTGAGCTCAATTATCTCGGTTCCTGATAAAGATATCAAAAATGTGTCAACTGATAAATTGTTTATCATGATAGCAGCAACAATTTATTAGTTGACACATTTTTTACATCTTTATCAGGAACCGAGATAAATGGGCTCAAAGTTGAAAGTCAGGGGGCACTTCTATTACAGGTTTTACGGTAATTCAAACGTTTTTTTTTTAAATTTTCATAGTTTTCGATTTTGGAAGAAATTTTCAGAA</canonical_amplicon>
		<polymorphic_amplicon>GGGAAGTTTTGAATATTTTGATTTTTTGATTTTTATGTTACCGTAAAACCTGTAATAGAAGTGCCYCCTGACTTTCAACTTTGAGCTCAATTATCTCGGTTCCTGATAAAGATATCAAAAATGTGTCAACTGATAAATTGTTTATCATGATAGCAGCAACAATTTATTAGTTGACACATTTTTTACATCTTTATCAGGAACCGAGATAAATGGGCTCAAAGTTGAAAGTCAGGGGGCACTTCTATTACAGGTTTTACGGTAATTCAAACGTTTTTTTTTTAAATTTTCATAGTTTTCGATTTTGGAAGAAATTTTCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38745</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>10760</contig_pos>
        <strand></strand>
        <context>gtgycycctg[A/G]ctttcaactt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTTTGATTTTTATGTTACCGTAAAACCTGTAATAGAAGTGCCTCCTG</left_flank>
        <right_flank>CTTTCAACTTTGAGCTCAATTATCTCGGTTCCTGATAAAGATATCAAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAGTATCAATCGGGTAATCCACAGTAATCTCAGAATTTCTTGTATAAGGTTATTTTTTCAGAAAATCCGAGTTGGAAGTAGCTCAAACAACTTGAGCCAGAAGTATCAAATCGAGGAAAATTTGAATGTTGTGAATATTTTAAGAGCGTTTACGAAGTGTGATTTTATATTTATTTTGATTTATTTCACAATGGGAATTCCGTTTCATTTGATTGGAAAGCATATGGATTCGGCAGAGTATTATGCTCTTTTTGAAGGTGAGCTCAGTTATTTAGGTCCTGCATTTTTGATAATTCGACCACAAGCTCAAGGGCAGAAAACCAAAGAAATGCAATTTTAAGAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGAAAGTTTGGAGTTGCCGAATTTTTGGGAATTTGAGTTTTCAGAGTTTTTTTTTGGGAAGTTTTGAATATTTTGATTTTTTGATTTTTATGTTACCGTAAAACCTGTAATAGAAGTGCCTCCTGACTTTCAACTTTGAGCTCAATTATCTCGGTTCCTGATAAAGATATCAAAAATGTGTCAACTGATAAATTGTTTATCATGATAGCAGCAACAATTTATTAGTTGACACATTTTTTACATCTTTATCAGGAACCGAGATAAATGGGCTCAAAGTTGAAAGTCAGGGGGCACTTCTATTACAGGTTTTACGGTAATTCAAACGTTTTTTTTTTAAATTTTCATAGTTTTCGATTTTGGAAGAAATTTTCAGAAATTTTTAGTGTATTTTTCAGATATTCTAAACCTGAATTTCAAAAATTTTGGAATCGAAATTTCAGGAATTTTTAGAAAATTTTGAATTTACCTCTCCTATTTTTTTGATGTTTGGAGTTTCGGATTTTTCGAAAATTTCGATTTTTTGAAAATTTTTAGAATTTTGCAATTTGAAACTTTCGGAGCATTTGGAACTTTTGAAACTTCCAAATCGTTCGAATTTTCGATTTTTTGGATATTTGAAAAATTTA</canonical>
            <polymorphic>TGAGTATCAATCGGGTAATCCACAGTAATCTCAGAATTTCTTGTATAAGGTTATTTTTTCAGAAAATCCGAGTTGGAAGTAGCTCAAACAACTTGAGCCAGAAGTATCAAATCGAGGAAAATTTGAATGTTGTGAATATTTTAAGAGCGTTTACGAAGTGTGATTTTATATTTATTTTGATTTATTTCACAATGGGAATTCCGTTTCATTTGATTGGAAAGCATATGGATTCGGCAGAGTATTATGCTCTTTTTGAAGGTGAGCTCAGTTATTTAGGTCCTGCATTTTTGATAATTCGACCACAAGCTCAAGGGCAGAAAACCAAAGAAATGCAATTTTAAGAAATTCTTGAAAAGTTCGATTTTTGGAATTTTTGAAAGTTTGGAGTTGCCGAATTTTTGGGAATTTGAGTTTTCAGAGTTTTTTTTTGGGAAGTTTTGAATATTTTGATTTTTTGATTTTTATGTTACCGTAAAACCTGTAATAGAAGTGCCTCCTGRCTTTCAACTTTGAGCTCAATTATCTCGGTTCCTGATAAAGATATCAAAAATGTGTCAACTGATAAATTGTTTATCATGATAGCAGCAACAATTTATTAGTTGACACATTTTTTACATCTTTATCAGGAACCGAGATAAATGGGCTCAAAGTTGAAAGTCAGGGGGCACTTCTATTACAGGTTTTACGGTAATTCAAACGTTTTTTTTTTAAATTTTCATAGTTTTCGATTTTGGAAGAAATTTTCAGAAATTTTTAGTGTATTTTTCAGATATTCTAAACCTGAATTTCAAAAATTTTGGAATCGAAATTTCAGGAATTTTTAGAAAATTTTGAATTTACCTCTCCTATTTTTTTGATGTTTGGAGTTTCGGATTTTTCGAAAATTTCGATTTTTTGAAAATTTTTAGAATTTTGCAATTTGAAACTTTCGGAGCATTTGGAACTTTTGAAACTTCCAAATCGTTCGAATTTTCGATTTTTTGGATATTTGAAAAATTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>348 188 188 148 49 44 35</canonical_bands>
                <polymorphic_bands>348 188 188 183 49 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGAAGTTTTGAATATTTTGATT</pcr_primer_p1>
		<pcr_primer_p2>TTCTGAAAATTTCTTCCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>GGGAAGTTTTGAATATTTTGATTTTTTGATTTTTATGTTACCGTAAAACCTGTAATAGAAGTGCCTCCTGACTTTCAACTTTGAGCTCAATTATCTCGGTTCCTGATAAAGATATCAAAAATGTGTCAACTGATAAATTGTTTATCATGATAGCAGCAACAATTTATTAGTTGACACATTTTTTACATCTTTATCAGGAACCGAGATAAATGGGCTCAAAGTTGAAAGTCAGGGGGCACTTCTATTACAGGTTTTACGGTAATTCAAACGTTTTTTTTTTAAATTTTCATAGTTTTCGATTTTGGAAGAAATTTTCAGAA</canonical_amplicon>
		<polymorphic_amplicon>GGGAAGTTTTGAATATTTTGATTTTTTGATTTTTATGTTACCGTAAAACCTGTAATAGAAGTGCCTCCTGRCTTTCAACTTTGAGCTCAATTATCTCGGTTCCTGATAAAGATATCAAAAATGTGTCAACTGATAAATTGTTTATCATGATAGCAGCAACAATTTATTAGTTGACACATTTTTTACATCTTTATCAGGAACCGAGATAAATGGGCTCAAAGTTGAAAGTCAGGGGGCACTTCTATTACAGGTTTTACGGTAATTCAAACGTTTTTTTTTTAAATTTTCATAGTTTTCGATTTTGGAAGAAATTTTCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38746</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>14988</contig_pos>
        <strand>+</strand>
        <context>GCCTTCGAAT[A/T]CTTTATTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTATTCTCCAGCTTTTTTTGCGCACTTTTCTACCTATAAAGCCTTCGAAT</left_flank>
        <right_flank>CTTTATTTTTTAATTTCAATTTTCAAAATTTCCTTTTTCGATGCCTCACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGGGGTCATCCACATTTTTCACTGTCACCACAATTTTGTCCACTTTTTTCGCATCGCCATAAACTTGATGACGGATGTGATCGAAGAATTCGGAAGAGAGAATTGGTGAAGGAGTTTCTGAAAAATTCGAATTTTTTTAGAGCTGGAAATTGGGATTTTTGGGTTTTTCTGATGAAAAAAGTTGGATTTTTCGGTAAAAATCGTTATAGTGCGAGAAAACTCAAATACAGATTCTATAGGAAGAAAAATAGCCTGAAATTCAAAATTCCAGATTTTCAGCGAATATTTGCTTCTCTCTCCTGGAAAATCCAAATTTTCTTAGGTTTTTCGACTTCAAATTCGGAAAATTACTTCATTTACACCAGAAAAAGGAATTTTTAGAGATTTTGAAGAAAAATCAAATTTTTAGCCCTCTCCCCAAAAATCTTCGAGAAAAAGCAATTTTCTATTATTCTCCAGCTTTTTTTGCGCACTTTTCTACCTATAAAGCCTTCGAATCCTTTATTTTTTAATTTCAATTTTCAAAATTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTGGATGTTTTCCGCAGTGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGACCTAGAAAATTGTTCAATTAGCATCGGAAACGCCGAAAAAGCCGTTGAAAAAAGGCAAAATCCGCGGGATATCGGAGTGTCGTAGTGTGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGAAGTCAGAATTGCCAACACATTTAGAGGTTAGGGAGAGTTCTAGAGCTCAAATGGATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTATGGAGGCAAAGGTTATTTTCCTTTTTTTTTATTTTTCAAAATTTTTCAATTCAATTTTTTTCAGA</canonical>
            <polymorphic>CGGGGGTCATCCACATTTTTCACTGTCACCACAATTTTGTCCACTTTTTTCGCATCGCCATAAACTTGATGACGGATGTGATCGAAGAATTCGGAAGAGAGAATTGGTGAAGGAGTTTCTGAAAAATTCGAATTTTTTTAGAGCTGGAAATTGGGATTTTTGGGTTTTTCTGATGAAAAAAGTTGGATTTTTCGGTAAAAATCGTTATAGTGCGAGAAAACTCAAATACAGATTCTATAGGAAGAAAAATAGCCTGAAATTCAAAATTCCAGATTTTCAGCGAATATTTGCTTCTCTCTCCTGGAAAATCCAAATTTTCTTAGGTTTTTCGACTTCAAATTCGGAAAATTACTTCATTTACACCAGAAAAAGGAATTTTTAGAGATTTTGAAGAAAAATCAAATTTTTAGCCCTCTCCCCAAAAATCTTCGAGAAAAAGCAATTTTCTATTATTCTCCAGCTTTTTTTGCGCACTTTTCTACCTATAAAGCCTTCGAATWCTTTATTTTTTAATTTCAATTTTCAAAATTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTGGATGTTTTCCGCAGTGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGACCTAGAAAATTGTTCAATTAGCATCGGAAACGCCGAAAAAGCCGTTGAAAAAAGGCAAAATCCGCGGGATATCGGAGTGTCGTAGTGTGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGAAGTCAGAATTGCCAACACATTTAGAGGTTAGGGAGAGTTCTAGAGCTCAAATGGATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTATGGAGGCAAAGGTTATTTTCCTTTTTTTTTATTTTTCAAAATTTTTCAATTCAATTTTTTTCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>504 265 231</canonical_bands>
                <polymorphic_bands>769 231</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>504 265 231</canonical_bands>
                <polymorphic_bands>769 231</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGATTTTGAAGAAAAATCAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTCAATTGAACGATGAAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGAGATTTTGAAGAAAAATCAAATTTTTAGCCCTCTCCCCAAAAATCTTCGAGAAAAAGCAATTTTCTATTATTCTCCAGCTTTTTTTGCGCACTTTTCTACCTATAAAGCCTTCGAATCCTTTATTTTTTAATTTCAATTTTCAAAATTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTGGATGTTTTCCGCAGTGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGAC</canonical_amplicon>
		<polymorphic_amplicon>AGAGATTTTGAAGAAAAATCAAATTTTTAGCCCTCTCCCCAAAAATCTTCGAGAAAAAGCAATTTTCTATTATTCTCCAGCTTTTTTTGCGCACTTTTCTACCTATAAAGCCTTCGAATWCTTTATTTTTTAATTTCAATTTTCAAAATTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTGGATGTTTTCCGCAGTGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38747</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>15016</contig_pos>
        <strand></strand>
        <context>AATTTTCAAA[A/T]TTTCCTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTACCTATAAAGCCTTCGAATCCTTTATTTTTTAATTTCAATTTTCAAA</left_flank>
        <right_flank>TTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTGGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCACAATTTTGTCCACTTTTTTCGCATCGCCATAAACTTGATGACGGATGTGATCGAAGAATTCGGAAGAGAGAATTGGTGAAGGAGTTTCTGAAAAATTCGAATTTTTTTAGAGCTGGAAATTGGGATTTTTGGGTTTTTCTGATGAAAAAAGTTGGATTTTTCGGTAAAAATCGTTATAGTGCGAGAAAACTCAAATACAGATTCTATAGGAAGAAAAATAGCCTGAAATTCAAAATTCCAGATTTTCAGCGAATATTTGCTTCTCTCTCCTGGAAAATCCAAATTTTCTTAGGTTTTTCGACTTCAAATTCGGAAAATTACTTCATTTACACCAGAAAAAGGAATTTTTAGAGATTTTGAAGAAAAATCAAATTTTTAGCCCTCTCCCCAAAAATCTTCGAGAAAAAGCAATTTTCTATTATTCTCCAGCTTTTTTTGCGCACTTTTCTACCTATAAAGCCTTCGAATCCTTTATTTTTTAATTTCAATTTTCAAAATTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTGGATGTTTTCCGCAGTGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGACCTAGAAAATTGTTCAATTAGCATCGGAAACGCCGAAAAAGCCGTTGAAAAAAGGCAAAATCCGCGGGATATCGGAGTGTCGTAGTGTGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGAAGTCAGAATTGCCAACACATTTAGAGGTTAGGGAGAGTTCTAGAGCTCAAATGGATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTATGGAGGCAAAGGTTATTTTCCTTTTTTTTTATTTTTCAAAATTTTTCAATTCAATTTTTTTCAGAGGATGCCGGGTAGCGACGTACATCATCC</canonical>
            <polymorphic>CCACAATTTTGTCCACTTTTTTCGCATCGCCATAAACTTGATGACGGATGTGATCGAAGAATTCGGAAGAGAGAATTGGTGAAGGAGTTTCTGAAAAATTCGAATTTTTTTAGAGCTGGAAATTGGGATTTTTGGGTTTTTCTGATGAAAAAAGTTGGATTTTTCGGTAAAAATCGTTATAGTGCGAGAAAACTCAAATACAGATTCTATAGGAAGAAAAATAGCCTGAAATTCAAAATTCCAGATTTTCAGCGAATATTTGCTTCTCTCTCCTGGAAAATCCAAATTTTCTTAGGTTTTTCGACTTCAAATTCGGAAAATTACTTCATTTACACCAGAAAAAGGAATTTTTAGAGATTTTGAAGAAAAATCAAATTTTTAGCCCTCTCCCCAAAAATCTTCGAGAAAAAGCAATTTTCTATTATTCTCCAGCTTTTTTTGCGCACTTTTCTACCTATAAAGCCTTCGAATCCTTTATTTTTTAATTTCAATTTTCAAAWTTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTGGATGTTTTCCGCAGTGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGACCTAGAAAATTGTTCAATTAGCATCGGAAACGCCGAAAAAGCCGTTGAAAAAAGGCAAAATCCGCGGGATATCGGAGTGTCGTAGTGTGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGAAGTCAGAATTGCCAACACATTTAGAGGTTAGGGAGAGTTCTAGAGCTCAAATGGATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTATGGAGGCAAAGGTTATTTTCCTTTTTTTTTATTTTTCAAAATTTTTCAATTCAATTTTTTTCAGAGGATGCCGGGTAGCGACGTACATCATCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>333 127 125 107 59 54 48 37 36 28 25 8 7 6</canonical_bands>
                <polymorphic_bands>458 127 107 59 54 48 37 36 28 25 8 7 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>129 109 107 98 71 64 55 48 41 39 28 27 25 23 21 18 14 13 9 9 8 8 8 7 6 6 5 4</canonical_bands>
                <polymorphic_bands>129 109 107 107 71 64 55 48 41 39 28 27 25 23 21 18 14 13 9 8 8 8 7 6 6 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGATTTTGAAGAAAAATCAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTCAATTGAACGATGAAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGAGATTTTGAAGAAAAATCAAATTTTTAGCCCTCTCCCCAAAAATCTTCGAGAAAAAGCAATTTTCTATTATTCTCCAGCTTTTTTTGCGCACTTTTCTACCTATAAAGCCTTCGAATCCTTTATTTTTTAATTTCAATTTTCAAAATTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTGGATGTTTTCCGCAGTGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGAC</canonical_amplicon>
		<polymorphic_amplicon>AGAGATTTTGAAGAAAAATCAAATTTTTAGCCCTCTCCCCAAAAATCTTCGAGAAAAAGCAATTTTCTATTATTCTCCAGCTTTTTTTGCGCACTTTTCTACCTATAAAGCCTTCGAATCCTTTATTTTTTAATTTCAATTTTCAAAWTTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTGGATGTTTTCCGCAGTGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38748</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>15063</contig_pos>
        <strand>+</strand>
        <context>CCGACGTCGT[G/T]GATGTTTTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAATTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGT</left_flank>
        <right_flank>GATGTTTTCCGCAGTGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCA</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTGATCGAAGAATTCGGAAGAGAGAATTGGTGAAGGAGTTTCTGAAAAATTCGAATTTTTTTAGAGCTGGAAATTGGGATTTTTGGGTTTTTCTGATGAAAAAAGTTGGATTTTTCGGTAAAAATCGTTATAGTGCGAGAAAACTCAAATACAGATTCTATAGGAAGAAAAATAGCCTGAAATTCAAAATTCCAGATTTTCAGCGAATATTTGCTTCTCTCTCCTGGAAAATCCAAATTTTCTTAGGTTTTTCGACTTCAAATTCGGAAAATTACTTCATTTACACCAGAAAAAGGAATTTTTAGAGATTTTGAAGAAAAATCAAATTTTTAGCCCTCTCCCCAAAAATCTTCGAGAAAAAGCAATTTTCTATTATTCTCCAGCTTTTTTTGCGCACTTTTCTACCTATAAAGCCTTCGAATCCTTTATTTTTTAATTTCAATTTTCAAAATTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTGGATGTTTTCCGCAGTGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGACCTAGAAAATTGTTCAATTAGCATCGGAAACGCCGAAAAAGCCGTTGAAAAAAGGCAAAATCCGCGGGATATCGGAGTGTCGTAGTGTGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGAAGTCAGAATTGCCAACACATTTAGAGGTTAGGGAGAGTTCTAGAGCTCAAATGGATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTATGGAGGCAAAGGTTATTTTCCTTTTTTTTTATTTTTCAAAATTTTTCAATTCAATTTTTTTCAGAGGATGCCGGGTAGCGACGTACATCATCCTAGGAGTGTTAGTGTTGTTCGGTTTTGTGTATAATAGTAGAGGAAAG</canonical>
            <polymorphic>ATGTGATCGAAGAATTCGGAAGAGAGAATTGGTGAAGGAGTTTCTGAAAAATTCGAATTTTTTTAGAGCTGGAAATTGGGATTTTTGGGTTTTTCTGATGAAAAAAGTTGGATTTTTCGGTAAAAATCGTTATAGTGCGAGAAAACTCAAATACAGATTCTATAGGAAGAAAAATAGCCTGAAATTCAAAATTCCAGATTTTCAGCGAATATTTGCTTCTCTCTCCTGGAAAATCCAAATTTTCTTAGGTTTTTCGACTTCAAATTCGGAAAATTACTTCATTTACACCAGAAAAAGGAATTTTTAGAGATTTTGAAGAAAAATCAAATTTTTAGCCCTCTCCCCAAAAATCTTCGAGAAAAAGCAATTTTCTATTATTCTCCAGCTTTTTTTGCGCACTTTTCTACCTATAAAGCCTTCGAATCCTTTATTTTTTAATTTCAATTTTCAAAATTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTKGATGTTTTCCGCAGTGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGACCTAGAAAATTGTTCAATTAGCATCGGAAACGCCGAAAAAGCCGTTGAAAAAAGGCAAAATCCGCGGGATATCGGAGTGTCGTAGTGTGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGAAGTCAGAATTGCCAACACATTTAGAGGTTAGGGAGAGTTCTAGAGCTCAAATGGATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTATGGAGGCAAAGGTTATTTTCCTTTTTTTTTATTTTTCAAAATTTTTCAATTCAATTTTTTTCAGAGGATGCCGGGTAGCGACGTACATCATCCTAGGAGTGTTAGTGTTGTTCGGTTTTGTGTATAATAGTAGAGGAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>150 141 111 110 103 97 75 29 22 21 21 18 16 15 11 10 9 8 7 6 6 5 5 2 2</canonical_bands>
                <polymorphic_bands>150 141 111 110 103 97 75 29 27 22 21 21 18 15 10 9 8 7 6 6 5 5 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>CCANNNNNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>XcmI</enzyme>
                </isoschizomers>
                <canonical_bands>506 494</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGATTTTGAAGAAAAATCAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTCAATTGAACGATGAAAGTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AGAGATTTTGAAGAAAAATCAAATTTTTAGCCCTCTCCCCAAAAATCTTCGAGAAAAAGCAATTTTCTATTATTCTCCAGCTTTTTTTGCGCACTTTTCTACCTATAAAGCCTTCGAATCCTTTATTTTTTAATTTCAATTTTCAAAATTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTGGATGTTTTCCGCAGTGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGAC</canonical_amplicon>
		<polymorphic_amplicon>AGAGATTTTGAAGAAAAATCAAATTTTTAGCCCTCTCCCCAAAAATCTTCGAGAAAAAGCAATTTTCTATTATTCTCCAGCTTTTTTTGCGCACTTTTCTACCTATAAAGCCTTCGAATCCTTTATTTTTTAATTTCAATTTTCAAAATTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTKGATGTTTTCCGCAGTGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38749</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>15078</contig_pos>
        <strand>+</strand>
        <context>TTTTCCGCAG[A/T]GCGAGTAGAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATGCCTCACTTTCCACAGCGGCCACCGACGTCGTGGATGTTTTCCGCAG</left_flank>
        <right_flank>GCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGACCTAGAAAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGGAAGAGAGAATTGGTGAAGGAGTTTCTGAAAAATTCGAATTTTTTTAGAGCTGGAAATTGGGATTTTTGGGTTTTTCTGATGAAAAAAGTTGGATTTTTCGGTAAAAATCGTTATAGTGCGAGAAAACTCAAATACAGATTCTATAGGAAGAAAAATAGCCTGAAATTCAAAATTCCAGATTTTCAGCGAATATTTGCTTCTCTCTCCTGGAAAATCCAAATTTTCTTAGGTTTTTCGACTTCAAATTCGGAAAATTACTTCATTTACACCAGAAAAAGGAATTTTTAGAGATTTTGAAGAAAAATCAAATTTTTAGCCCTCTCCCCAAAAATCTTCGAGAAAAAGCAATTTTCTATTATTCTCCAGCTTTTTTTGCGCACTTTTCTACCTATAAAGCCTTCGAATCCTTTATTTTTTAATTTCAATTTTCAAAATTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTGGATGTTTTCCGCAGTGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGACCTAGAAAATTGTTCAATTAGCATCGGAAACGCCGAAAAAGCCGTTGAAAAAAGGCAAAATCCGCGGGATATCGGAGTGTCGTAGTGTGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGAAGTCAGAATTGCCAACACATTTAGAGGTTAGGGAGAGTTCTAGAGCTCAAATGGATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTATGGAGGCAAAGGTTATTTTCCTTTTTTTTTATTTTTCAAAATTTTTCAATTCAATTTTTTTCAGAGGATGCCGGGTAGCGACGTACATCATCCTAGGAGTGTTAGTGTTGTTCGGTTTTGTGTATAATAGTAGAGGAAAGGTGAGAAAAATTGAA</canonical>
            <polymorphic>TCGGAAGAGAGAATTGGTGAAGGAGTTTCTGAAAAATTCGAATTTTTTTAGAGCTGGAAATTGGGATTTTTGGGTTTTTCTGATGAAAAAAGTTGGATTTTTCGGTAAAAATCGTTATAGTGCGAGAAAACTCAAATACAGATTCTATAGGAAGAAAAATAGCCTGAAATTCAAAATTCCAGATTTTCAGCGAATATTTGCTTCTCTCTCCTGGAAAATCCAAATTTTCTTAGGTTTTTCGACTTCAAATTCGGAAAATTACTTCATTTACACCAGAAAAAGGAATTTTTAGAGATTTTGAAGAAAAATCAAATTTTTAGCCCTCTCCCCAAAAATCTTCGAGAAAAAGCAATTTTCTATTATTCTCCAGCTTTTTTTGCGCACTTTTCTACCTATAAAGCCTTCGAATCCTTTATTTTTTAATTTCAATTTTCAAAATTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTGGATGTTTTCCGCAGWGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGACCTAGAAAATTGTTCAATTAGCATCGGAAACGCCGAAAAAGCCGTTGAAAAAAGGCAAAATCCGCGGGATATCGGAGTGTCGTAGTGTGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGAAGTCAGAATTGCCAACACATTTAGAGGTTAGGGAGAGTTCTAGAGCTCAAATGGATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTATGGAGGCAAAGGTTATTTTCCTTTTTTTTTATTTTTCAAAATTTTTCAATTCAATTTTTTTCAGAGGATGCCGGGTAGCGACGTACATCATCCTAGGAGTGTTAGTGTTGTTCGGTTTTGTGTATAATAGTAGAGGAAAGGTGAGAAAAATTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>150 141 111 110 103 97 75 22 21 21 21 19 16 15 12 11 10 9 8 7 6 6 5 2 2</canonical_bands>
                <polymorphic_bands>150 141 111 110 103 97 75 37 22 21 21 19 15 12 11 10 9 8 7 6 6 5 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGCGCACTTTTCTACCTAT</pcr_primer_p1>
		<pcr_primer_p2>CACACTACGACACTCCGATA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTGCGCACTTTTCTACCTATAAAGCCTTCGAATCCTTTATTTTTTAATTTCAATTTTCAAAATTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTGGATGTTTTCCGCAGTGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGACCTAGAAAATTGTTCAATTAGCATCGGAAACGCCGAAAAAGCCGTTGAAAAAAGGCAAAATCCGCGGGATATCGGAGTGTCGTAGTGTG</canonical_amplicon>
		<polymorphic_amplicon>TTGCGCACTTTTCTACCTATAAAGCCTTCGAATCCTTTATTTTTTAATTTCAATTTTCAAAATTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTGGATGTTTTCCGCAGWGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGACCTAGAAAATTGTTCAATTAGCATCGGAAACGCCGAAAAAGCCGTTGAAAAAAGGCAAAATCCGCGGGATATCGGAGTGTCGTAGTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38750</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>15130</contig_pos>
        <strand>+</strand>
        <context>CTAGAAAATT[G/T]TTCAATTAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGACCTAGAAAATT</left_flank>
        <right_flank>TTCAATTAGCATCGGAAACGCCGAAAAAGCCGTTGAAAAAAGGCAAAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTGGAAATTGGGATTTTTGGGTTTTTCTGATGAAAAAAGTTGGATTTTTCGGTAAAAATCGTTATAGTGCGAGAAAACTCAAATACAGATTCTATAGGAAGAAAAATAGCCTGAAATTCAAAATTCCAGATTTTCAGCGAATATTTGCTTCTCTCTCCTGGAAAATCCAAATTTTCTTAGGTTTTTCGACTTCAAATTCGGAAAATTACTTCATTTACACCAGAAAAAGGAATTTTTAGAGATTTTGAAGAAAAATCAAATTTTTAGCCCTCTCCCCAAAAATCTTCGAGAAAAAGCAATTTTCTATTATTCTCCAGCTTTTTTTGCGCACTTTTCTACCTATAAAGCCTTCGAATCCTTTATTTTTTAATTTCAATTTTCAAAATTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTGGATGTTTTCCGCAGTGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGACCTAGAAAATTGTTCAATTAGCATCGGAAACGCCGAAAAAGCCGTTGAAAAAAGGCAAAATCCGCGGGATATCGGAGTGTCGTAGTGTGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGAAGTCAGAATTGCCAACACATTTAGAGGTTAGGGAGAGTTCTAGAGCTCAAATGGATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTATGGAGGCAAAGGTTATTTTCCTTTTTTTTTATTTTTCAAAATTTTTCAATTCAATTTTTTTCAGAGGATGCCGGGTAGCGACGTACATCATCCTAGGAGTGTTAGTGTTGTTCGGTTTTGTGTATAATAGTAGAGGAAAGGTGAGAAAAATTGAAAAAATCCTCAAAAAATGTCGAAAAATTAGAAGAAGAAGTTGAAAAAATAAGA</canonical>
            <polymorphic>GCTGGAAATTGGGATTTTTGGGTTTTTCTGATGAAAAAAGTTGGATTTTTCGGTAAAAATCGTTATAGTGCGAGAAAACTCAAATACAGATTCTATAGGAAGAAAAATAGCCTGAAATTCAAAATTCCAGATTTTCAGCGAATATTTGCTTCTCTCTCCTGGAAAATCCAAATTTTCTTAGGTTTTTCGACTTCAAATTCGGAAAATTACTTCATTTACACCAGAAAAAGGAATTTTTAGAGATTTTGAAGAAAAATCAAATTTTTAGCCCTCTCCCCAAAAATCTTCGAGAAAAAGCAATTTTCTATTATTCTCCAGCTTTTTTTGCGCACTTTTCTACCTATAAAGCCTTCGAATCCTTTATTTTTTAATTTCAATTTTCAAAATTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTGGATGTTTTCCGCAGTGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGACCTAGAAAATTKTTCAATTAGCATCGGAAACGCCGAAAAAGCCGTTGAAAAAAGGCAAAATCCGCGGGATATCGGAGTGTCGTAGTGTGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGAAGTCAGAATTGCCAACACATTTAGAGGTTAGGGAGAGTTCTAGAGCTCAAATGGATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTATGGAGGCAAAGGTTATTTTCCTTTTTTTTTATTTTTCAAAATTTTTCAATTCAATTTTTTTCAGAGGATGCCGGGTAGCGACGTACATCATCCTAGGAGTGTTAGTGTTGTTCGGTTTTGTGTATAATAGTAGAGGAAAGGTGAGAAAAATTGAAAAAATCCTCAAAAAATGTCGAAAAATTAGAAGAAGAAGTTGAAAAAATAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGCGCACTTTTCTACCTAT</pcr_primer_p1>
		<pcr_primer_p2>CACACTACGACACTCCGATA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TTGCGCACTTTTCTACCTATAAAGCCTTCGAATCCTTTATTTTTTAATTTCAATTTTCAAAATTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTGGATGTTTTCCGCAGTGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGACCTAGAAAATTGTTCAATTAGCATCGGAAACGCCGAAAAAGCCGTTGAAAAAAGGCAAAATCCGCGGGATATCGGAGTGTCGTAGTGTG</canonical_amplicon>
		<polymorphic_amplicon>TTGCGCACTTTTCTACCTATAAAGCCTTCGAATCCTTTATTTTTTAATTTCAATTTTCAAAATTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTGGATGTTTTCCGCAGTGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGACCTAGAAAATTKTTCAATTAGCATCGGAAACGCCGAAAAAGCCGTTGAAAAAAGGCAAAATCCGCGGGATATCGGAGTGTCGTAGTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38751</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>15256</contig_pos>
        <strand>+</strand>
        <context>AAAGTGGGCG[A/G]AGTCAGAATW</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCG</left_flank>
        <right_flank>AGTCAGAATTGCCAACACATTTAGAGGTTAGGGAGAGTTCTAGAGCTCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGATTTTCAGCGAATATTTGCTTCTCTCTCCTGGAAAATCCAAATTTTCTTAGGTTTTTCGACTTCAAATTCGGAAAATTACTTCATTTACACCAGAAAAAGGAATTTTTAGAGATTTTGAAGAAAAATCAAATTTTTAGCCCTCTCCCCAAAAATCTTCGAGAAAAAGCAATTTTCTATTATTCTCCAGCTTTTTTTGCGCACTTTTCTACCTATAAAGCCTTCGAATCCTTTATTTTTTAATTTCAATTTTCAAAATTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTGGATGTTTTCCGCAGTGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGACCTAGAAAATTGTTCAATTAGCATCGGAAACGCCGAAAAAGCCGTTGAAAAAAGGCAAAATCCGCGGGATATCGGAGTGTCGTAGTGTGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGAAGTCAGAATTGCCAACACATTTAGAGGTTAGGGAGAGTTCTAGAGCTCAAATGGATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTATGGAGGCAAAGGTTATTTTCCTTTTTTTTTATTTTTCAAAATTTTTCAATTCAATTTTTTTCAGAGGATGCCGGGTAGCGACGTACATCATCCTAGGAGTGTTAGTGTTGTTCGGTTTTGTGTATAATAGTAGAGGAAAGGTGAGAAAAATTGAAAAAATCCTCAAAAAATGTCGAAAAATTAGAAGAAGAAGTTGAAAAAATAAGAAAATTGCGATGGCCTAGAGCTTAAAAAGGACTAGAGAAACCGTTTGAGCCCGAAAAATGATAAAAAATCGAGTTTTTCGGAAGTTTTTAATTTTTCGATTTTTTTCATTTTTTTTTCAAATTTTTC</canonical>
            <polymorphic>CCAGATTTTCAGCGAATATTTGCTTCTCTCTCCTGGAAAATCCAAATTTTCTTAGGTTTTTCGACTTCAAATTCGGAAAATTACTTCATTTACACCAGAAAAAGGAATTTTTAGAGATTTTGAAGAAAAATCAAATTTTTAGCCCTCTCCCCAAAAATCTTCGAGAAAAAGCAATTTTCTATTATTCTCCAGCTTTTTTTGCGCACTTTTCTACCTATAAAGCCTTCGAATCCTTTATTTTTTAATTTCAATTTTCAAAATTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTGGATGTTTTCCGCAGTGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGACCTAGAAAATTGTTCAATTAGCATCGGAAACGCCGAAAAAGCCGTTGAAAAAAGGCAAAATCCGCGGGATATCGGAGTGTCGTAGTGTGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGRAGTCAGAATTGCCAACACATTTAGAGGTTAGGGAGAGTTCTAGAGCTCAAATGGATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTATGGAGGCAAAGGTTATTTTCCTTTTTTTTTATTTTTCAAAATTTTTCAATTCAATTTTTTTCAGAGGATGCCGGGTAGCGACGTACATCATCCTAGGAGTGTTAGTGTTGTTCGGTTTTGTGTATAATAGTAGAGGAAAGGTGAGAAAAATTGAAAAAATCCTCAAAAAATGTCGAAAAATTAGAAGAAGAAGTTGAAAAAATAAGAAAATTGCGATGGCCTAGAGCTTAAAAAGGACTAGAGAAACCGTTTGAGCCCGAAAAATGATAAAAAATCGAGTTTTTCGGAAGTTTTTAATTTTTCGATTTTTTTCATTTTTTTTTCAAATTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATCGGAGTGTCGTAGTGTG</pcr_primer_p1>
		<pcr_primer_p2>TAATCTCTGCACTTGTAGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>ATATCGGAGTGTCGTAGTGTGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGAAGTCAGAATTGCCAACACATTTAGAGGTTAGGGAGAGTTCTAGAGCTCAAATGGATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTA</canonical_amplicon>
		<polymorphic_amplicon>ATATCGGAGTGTCGTAGTGTGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGRAGTCAGAATTGCCAACACATTTAGAGGTTAGGGAGAGTTCTAGAGCTCAAATGGATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38752</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>15266</contig_pos>
        <strand>+</strand>
        <context>RAGTCAGAAT[A/T]GCCAACACAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGAAGTCAGAAT</left_flank>
        <right_flank>GCCAACACATTTAGAGGTTAGGGAGAGTTCTAGAGCTCAAATGGATATTT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCGAATATTTGCTTCTCTCTCCTGGAAAATCCAAATTTTCTTAGGTTTTTCGACTTCAAATTCGGAAAATTACTTCATTTACACCAGAAAAAGGAATTTTTAGAGATTTTGAAGAAAAATCAAATTTTTAGCCCTCTCCCCAAAAATCTTCGAGAAAAAGCAATTTTCTATTATTCTCCAGCTTTTTTTGCGCACTTTTCTACCTATAAAGCCTTCGAATCCTTTATTTTTTAATTTCAATTTTCAAAATTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTGGATGTTTTCCGCAGTGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGACCTAGAAAATTGTTCAATTAGCATCGGAAACGCCGAAAAAGCCGTTGAAAAAAGGCAAAATCCGCGGGATATCGGAGTGTCGTAGTGTGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGAAGTCAGAATTGCCAACACATTTAGAGGTTAGGGAGAGTTCTAGAGCTCAAATGGATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTATGGAGGCAAAGGTTATTTTCCTTTTTTTTTATTTTTCAAAATTTTTCAATTCAATTTTTTTCAGAGGATGCCGGGTAGCGACGTACATCATCCTAGGAGTGTTAGTGTTGTTCGGTTTTGTGTATAATAGTAGAGGAAAGGTGAGAAAAATTGAAAAAATCCTCAAAAAATGTCGAAAAATTAGAAGAAGAAGTTGAAAAAATAAGAAAATTGCGATGGCCTAGAGCTTAAAAAGGACTAGAGAAACCGTTTGAGCCCGAAAAATGATAAAAAATCGAGTTTTTCGGAAGTTTTTAATTTTTCGATTTTTTTCATTTTTTTTTCAAATTTTTCAAAAATTGAC</canonical>
            <polymorphic>AGCGAATATTTGCTTCTCTCTCCTGGAAAATCCAAATTTTCTTAGGTTTTTCGACTTCAAATTCGGAAAATTACTTCATTTACACCAGAAAAAGGAATTTTTAGAGATTTTGAAGAAAAATCAAATTTTTAGCCCTCTCCCCAAAAATCTTCGAGAAAAAGCAATTTTCTATTATTCTCCAGCTTTTTTTGCGCACTTTTCTACCTATAAAGCCTTCGAATCCTTTATTTTTTAATTTCAATTTTCAAAATTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTGGATGTTTTCCGCAGTGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGACCTAGAAAATTGTTCAATTAGCATCGGAAACGCCGAAAAAGCCGTTGAAAAAAGGCAAAATCCGCGGGATATCGGAGTGTCGTAGTGTGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGAAGTCAGAATWGCCAACACATTTAGAGGTTAGGGAGAGTTCTAGAGCTCAAATGGATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTATGGAGGCAAAGGTTATTTTCCTTTTTTTTTATTTTTCAAAATTTTTCAATTCAATTTTTTTCAGAGGATGCCGGGTAGCGACGTACATCATCCTAGGAGTGTTAGTGTTGTTCGGTTTTGTGTATAATAGTAGAGGAAAGGTGAGAAAAATTGAAAAAATCCTCAAAAAATGTCGAAAAATTAGAAGAAGAAGTTGAAAAAATAAGAAAATTGCGATGGCCTAGAGCTTAAAAAGGACTAGAGAAACCGTTTGAGCCCGAAAAATGATAAAAAATCGAGTTTTTCGGAAGTTTTTAATTTTTCGATTTTTTTCATTTTTTTTTCAAATTTTTCAAAAATTGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>129 107 98 96 87 71 64 39 34 30 30 30 28 27 25 21 13 11 9 9 8 8 8 7 6 5</canonical_bands>
                <polymorphic_bands>193 107 98 96 87 71 39 34 30 30 30 28 27 25 21 13 11 9 9 8 8 8 7 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATCGGAGTGTCGTAGTGTG</pcr_primer_p1>
		<pcr_primer_p2>TAATCTCTGCACTTGTAGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>ATATCGGAGTGTCGTAGTGTGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGAAGTCAGAATTGCCAACACATTTAGAGGTTAGGGAGAGTTCTAGAGCTCAAATGGATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTA</canonical_amplicon>
		<polymorphic_amplicon>ATATCGGAGTGTCGTAGTGTGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGAAGTCAGAATWGCCAACACATTTAGAGGTTAGGGAGAGTTCTAGAGCTCAAATGGATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38753</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>15279</contig_pos>
        <strand>+</strand>
        <context>CAACACATTT[A/G]GAGGTTRGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCCGCACCGGTGCAAAAAAGTGGGCGAAGTCAGAATTGCCAACACATTT</left_flank>
        <right_flank>GAGGTTAGGGAGAGTTCTAGAGCTCAAATGGATATTTTATGACGAAAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTCTCTCCTGGAAAATCCAAATTTTCTTAGGTTTTTCGACTTCAAATTCGGAAAATTACTTCATTTACACCAGAAAAAGGAATTTTTAGAGATTTTGAAGAAAAATCAAATTTTTAGCCCTCTCCCCAAAAATCTTCGAGAAAAAGCAATTTTCTATTATTCTCCAGCTTTTTTTGCGCACTTTTCTACCTATAAAGCCTTCGAATCCTTTATTTTTTAATTTCAATTTTCAAAATTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTGGATGTTTTCCGCAGTGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGACCTAGAAAATTGTTCAATTAGCATCGGAAACGCCGAAAAAGCCGTTGAAAAAAGGCAAAATCCGCGGGATATCGGAGTGTCGTAGTGTGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGAAGTCAGAATTGCCAACACATTTAGAGGTTAGGGAGAGTTCTAGAGCTCAAATGGATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTATGGAGGCAAAGGTTATTTTCCTTTTTTTTTATTTTTCAAAATTTTTCAATTCAATTTTTTTCAGAGGATGCCGGGTAGCGACGTACATCATCCTAGGAGTGTTAGTGTTGTTCGGTTTTGTGTATAATAGTAGAGGAAAGGTGAGAAAAATTGAAAAAATCCTCAAAAAATGTCGAAAAATTAGAAGAAGAAGTTGAAAAAATAAGAAAATTGCGATGGCCTAGAGCTTAAAAAGGACTAGAGAAACCGTTTGAGCCCGAAAAATGATAAAAAATCGAGTTTTTCGGAAGTTTTTAATTTTTCGATTTTTTTCATTTTTTTTTCAAATTTTTCAAAAATTGACCTAAAAAAGTCAT</canonical>
            <polymorphic>TTCTCTCTCCTGGAAAATCCAAATTTTCTTAGGTTTTTCGACTTCAAATTCGGAAAATTACTTCATTTACACCAGAAAAAGGAATTTTTAGAGATTTTGAAGAAAAATCAAATTTTTAGCCCTCTCCCCAAAAATCTTCGAGAAAAAGCAATTTTCTATTATTCTCCAGCTTTTTTTGCGCACTTTTCTACCTATAAAGCCTTCGAATCCTTTATTTTTTAATTTCAATTTTCAAAATTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTGGATGTTTTCCGCAGTGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGACCTAGAAAATTGTTCAATTAGCATCGGAAACGCCGAAAAAGCCGTTGAAAAAAGGCAAAATCCGCGGGATATCGGAGTGTCGTAGTGTGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGAAGTCAGAATTGCCAACACATTTRGAGGTTAGGGAGAGTTCTAGAGCTCAAATGGATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTATGGAGGCAAAGGTTATTTTCCTTTTTTTTTATTTTTCAAAATTTTTCAATTCAATTTTTTTCAGAGGATGCCGGGTAGCGACGTACATCATCCTAGGAGTGTTAGTGTTGTTCGGTTTTGTGTATAATAGTAGAGGAAAGGTGAGAAAAATTGAAAAAATCCTCAAAAAATGTCGAAAAATTAGAAGAAGAAGTTGAAAAAATAAGAAAATTGCGATGGCCTAGAGCTTAAAAAGGACTAGAGAAACCGTTTGAGCCCGAAAAATGATAAAAAATCGAGTTTTTCGGAAGTTTTTAATTTTTCGATTTTTTTCATTTTTTTTTCAAATTTTTCAAAAATTGACCTAAAAAAGTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATCGGAGTGTCGTAGTGTG</pcr_primer_p1>
		<pcr_primer_p2>TAATCTCTGCACTTGTAGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>ATATCGGAGTGTCGTAGTGTGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGAAGTCAGAATTGCCAACACATTTAGAGGTTAGGGAGAGTTCTAGAGCTCAAATGGATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTA</canonical_amplicon>
		<polymorphic_amplicon>ATATCGGAGTGTCGTAGTGTGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGAAGTCAGAATTGCCAACACATTTRGAGGTTAGGGAGAGTTCTAGAGCTCAAATGGATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38754</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>15286</contig_pos>
        <strand>+</strand>
        <context>TTTRGAGGTT[A/G]GGGAGAGTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCGGTGCAAAAAAGTGGGCGAAGTCAGAATTGCCAACACATTTAGAGGTT</left_flank>
        <right_flank>GGGAGAGTTCTAGAGCTCAAATGGATATTTTATGACGAAAAATTGGTTTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTGGAAAATCCAAATTTTCTTAGGTTTTTCGACTTCAAATTCGGAAAATTACTTCATTTACACCAGAAAAAGGAATTTTTAGAGATTTTGAAGAAAAATCAAATTTTTAGCCCTCTCCCCAAAAATCTTCGAGAAAAAGCAATTTTCTATTATTCTCCAGCTTTTTTTGCGCACTTTTCTACCTATAAAGCCTTCGAATCCTTTATTTTTTAATTTCAATTTTCAAAATTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTGGATGTTTTCCGCAGTGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGACCTAGAAAATTGTTCAATTAGCATCGGAAACGCCGAAAAAGCCGTTGAAAAAAGGCAAAATCCGCGGGATATCGGAGTGTCGTAGTGTGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGAAGTCAGAATTGCCAACACATTTAGAGGTTAGGGAGAGTTCTAGAGCTCAAATGGATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTATGGAGGCAAAGGTTATTTTCCTTTTTTTTTATTTTTCAAAATTTTTCAATTCAATTTTTTTCAGAGGATGCCGGGTAGCGACGTACATCATCCTAGGAGTGTTAGTGTTGTTCGGTTTTGTGTATAATAGTAGAGGAAAGGTGAGAAAAATTGAAAAAATCCTCAAAAAATGTCGAAAAATTAGAAGAAGAAGTTGAAAAAATAAGAAAATTGCGATGGCCTAGAGCTTAAAAAGGACTAGAGAAACCGTTTGAGCCCGAAAAATGATAAAAAATCGAGTTTTTCGGAAGTTTTTAATTTTTCGATTTTTTTCATTTTTTTTTCAAATTTTTCAAAAATTGACCTAAAAAAGTCATTTTTGCT</canonical>
            <polymorphic>TCCTGGAAAATCCAAATTTTCTTAGGTTTTTCGACTTCAAATTCGGAAAATTACTTCATTTACACCAGAAAAAGGAATTTTTAGAGATTTTGAAGAAAAATCAAATTTTTAGCCCTCTCCCCAAAAATCTTCGAGAAAAAGCAATTTTCTATTATTCTCCAGCTTTTTTTGCGCACTTTTCTACCTATAAAGCCTTCGAATCCTTTATTTTTTAATTTCAATTTTCAAAATTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTGGATGTTTTCCGCAGTGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGACCTAGAAAATTGTTCAATTAGCATCGGAAACGCCGAAAAAGCCGTTGAAAAAAGGCAAAATCCGCGGGATATCGGAGTGTCGTAGTGTGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGAAGTCAGAATTGCCAACACATTTAGAGGTTRGGGAGAGTTCTAGAGCTCAAATGGATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTATGGAGGCAAAGGTTATTTTCCTTTTTTTTTATTTTTCAAAATTTTTCAATTCAATTTTTTTCAGAGGATGCCGGGTAGCGACGTACATCATCCTAGGAGTGTTAGTGTTGTTCGGTTTTGTGTATAATAGTAGAGGAAAGGTGAGAAAAATTGAAAAAATCCTCAAAAAATGTCGAAAAATTAGAAGAAGAAGTTGAAAAAATAAGAAAATTGCGATGGCCTAGAGCTTAAAAAGGACTAGAGAAACCGTTTGAGCCCGAAAAATGATAAAAAATCGAGTTTTTCGGAAGTTTTTAATTTTTCGATTTTTTTCATTTTTTTTTCAAATTTTTCAAAAATTGACCTAAAAAAGTCATTTTTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATCGGAGTGTCGTAGTGTG</pcr_primer_p1>
		<pcr_primer_p2>TAATCTCTGCACTTGTAGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>ATATCGGAGTGTCGTAGTGTGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGAAGTCAGAATTGCCAACACATTTAGAGGTTAGGGAGAGTTCTAGAGCTCAAATGGATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTA</canonical_amplicon>
		<polymorphic_amplicon>ATATCGGAGTGTCGTAGTGTGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGAAGTCAGAATTGCCAACACATTTAGAGGTTRGGGAGAGTTCTAGAGCTCAAATGGATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38755</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>15309</contig_pos>
        <strand>+</strand>
        <context>GAGCTCAAAT[A/G]GATATTTTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAGAATTGCCAACACATTTAGAGGTTAGGGAGAGTTCTAGAGCTCAAAT</left_flank>
        <right_flank>GATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTTTTTCGACTTCAAATTCGGAAAATTACTTCATTTACACCAGAAAAAGGAATTTTTAGAGATTTTGAAGAAAAATCAAATTTTTAGCCCTCTCCCCAAAAATCTTCGAGAAAAAGCAATTTTCTATTATTCTCCAGCTTTTTTTGCGCACTTTTCTACCTATAAAGCCTTCGAATCCTTTATTTTTTAATTTCAATTTTCAAAATTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTGGATGTTTTCCGCAGTGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGACCTAGAAAATTGTTCAATTAGCATCGGAAACGCCGAAAAAGCCGTTGAAAAAAGGCAAAATCCGCGGGATATCGGAGTGTCGTAGTGTGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGAAGTCAGAATTGCCAACACATTTAGAGGTTAGGGAGAGTTCTAGAGCTCAAATGGATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTATGGAGGCAAAGGTTATTTTCCTTTTTTTTTATTTTTCAAAATTTTTCAATTCAATTTTTTTCAGAGGATGCCGGGTAGCGACGTACATCATCCTAGGAGTGTTAGTGTTGTTCGGTTTTGTGTATAATAGTAGAGGAAAGGTGAGAAAAATTGAAAAAATCCTCAAAAAATGTCGAAAAATTAGAAGAAGAAGTTGAAAAAATAAGAAAATTGCGATGGCCTAGAGCTTAAAAAGGACTAGAGAAACCGTTTGAGCCCGAAAAATGATAAAAAATCGAGTTTTTCGGAAGTTTTTAATTTTTCGATTTTTTTCATTTTTTTTTCAAATTTTTCAAAAATTGACCTAAAAAAGTCATTTTTGCTGAAAAATTCAAGAAAATCTGTCA</canonical>
            <polymorphic>AGGTTTTTCGACTTCAAATTCGGAAAATTACTTCATTTACACCAGAAAAAGGAATTTTTAGAGATTTTGAAGAAAAATCAAATTTTTAGCCCTCTCCCCAAAAATCTTCGAGAAAAAGCAATTTTCTATTATTCTCCAGCTTTTTTTGCGCACTTTTCTACCTATAAAGCCTTCGAATCCTTTATTTTTTAATTTCAATTTTCAAAATTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTGGATGTTTTCCGCAGTGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGACCTAGAAAATTGTTCAATTAGCATCGGAAACGCCGAAAAAGCCGTTGAAAAAAGGCAAAATCCGCGGGATATCGGAGTGTCGTAGTGTGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGAAGTCAGAATTGCCAACACATTTAGAGGTTAGGGAGAGTTCTAGAGCTCAAATRGATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTATGGAGGCAAAGGTTATTTTCCTTTTTTTTTATTTTTCAAAATTTTTCAATTCAATTTTTTTCAGAGGATGCCGGGTAGCGACGTACATCATCCTAGGAGTGTTAGTGTTGTTCGGTTTTGTGTATAATAGTAGAGGAAAGGTGAGAAAAATTGAAAAAATCCTCAAAAAATGTCGAAAAATTAGAAGAAGAAGTTGAAAAAATAAGAAAATTGCGATGGCCTAGAGCTTAAAAAGGACTAGAGAAACCGTTTGAGCCCGAAAAATGATAAAAAATCGAGTTTTTCGGAAGTTTTTAATTTTTCGATTTTTTTCATTTTTTTTTCAAATTTTTCAAAAATTGACCTAAAAAAGTCATTTTTGCTGAAAAATTCAAGAAAATCTGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATCGGAGTGTCGTAGTGTG</pcr_primer_p1>
		<pcr_primer_p2>TAATCTCTGCACTTGTAGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>ATATCGGAGTGTCGTAGTGTGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGAAGTCAGAATTGCCAACACATTTAGAGGTTAGGGAGAGTTCTAGAGCTCAAATGGATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTA</canonical_amplicon>
		<polymorphic_amplicon>ATATCGGAGTGTCGTAGTGTGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGAAGTCAGAATTGCCAACACATTTAGAGGTTAGGGAGAGTTCTAGAGCTCAAATRGATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38756</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>15453</contig_pos>
        <strand></strand>
        <context>CCTTTTTTTT[T/G]ATTTTTCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AAGCTACAAGTGCAGAGATTATGGAGGCAAAGGTTATTTTCCTTTTTTTT</left_flank>
        <right_flank>ATTTTTCAAAATTTTTCAATTCAATTTTTTTCAGAGGATGCCGGGTAGCG</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGCGCACTTTTCTACCTATAAAGCCTTCGAATCCTTTATTTTTTAATTTCAATTTTCAAAATTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTGGATGTTTTCCGCAGTGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGACCTAGAAAATTGTTCAATTAGCATCGGAAACGCCGAAAAAGCCGTTGAAAAAAGGCAAAATCCGCGGGATATCGGAGTGTCGTAGTGTGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGAAGTCAGAATTGCCAACACATTTAGAGGTTAGGGAGAGTTCTAGAGCTCAAATGGATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTATGGAGGCAAAGGTTATTTTCCTTTTTTTTTATTTTTCAAAATTTTTCAATTCAATTTTTTTCAGAGGATGCCGGGTAGCGACGTACATCATCCTAGGAGTGTTAGTGTTGTTCGGTTTTGTGTATAATAGTAGAGGAAAGGTGAGAAAAATTGAAAAAATCCTCAAAAAATGTCGAAAAATTAGAAGAAGAAGTTGAAAAAATAAGAAAATTGCGATGGCCTAGAGCTTAAAAAGGACTAGAGAAACCGTTTGAGCCCGAAAAATGATAAAAAATCGAGTTTTTCGGAAGTTTTTAATTTTTCGATTTTTTTCATTTTTTTTTCAAATTTTTCAAAAATTGACCTAAAAAAGTCATTTTTGCTGAAAAATTCAAGAAAATCTGTCAAAAAAAAAGCCTGCTTTTTGTCGTTTTAAATTTCAAATCCTGAAAAATCATTGTTTTTTTAACTAAGAAAATTTTCGTATTTTTTCAAAATCTCTGAAAATTCCGTTATTTTCCGAATTTTCCATTTTTTCAGAACTTCTCCTC</canonical>
            <polymorphic>TTTGCGCACTTTTCTACCTATAAAGCCTTCGAATCCTTTATTTTTTAATTTCAATTTTCAAAATTTCCTTTTTCGATGCCTCACTTTCCACAGCGGCCACCGACGTCGTGGATGTTTTCCGCAGTGCGAGTAGACTTCTGACGGGCACTTTCATCGTTCAATTGACCTAGAAAATTGTTCAATTAGCATCGGAAACGCCGAAAAAGCCGTTGAAAAAAGGCAAAATCCGCGGGATATCGGAGTGTCGTAGTGTGCCGCACACTTGCGAAAAGGCGCGCCGCACCGGTGCAAAAAAGTGGGCGAAGTCAGAATTGCCAACACATTTAGAGGTTAGGGAGAGTTCTAGAGCTCAAATGGATATTTTATGACGAAAAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTATGGAGGCAAAGGTTATTTTCCTTTTTTTTKATTTTTCAAAATTTTTCAATTCAATTTTTTTCAGAGGATGCCGGGTAGCGACGTACATCATCCTAGGAGTGTTAGTGTTGTTCGGTTTTGTGTATAATAGTAGAGGAAAGGTGAGAAAAATTGAAAAAATCCTCAAAAAATGTCGAAAAATTAGAAGAAGAAGTTGAAAAAATAAGAAAATTGCGATGGCCTAGAGCTTAAAAAGGACTAGAGAAACCGTTTGAGCCCGAAAAATGATAAAAAATCGAGTTTTTCGGAAGTTTTTAATTTTTCGATTTTTTTCATTTTTTTTTCAAATTTTTCAAAAATTGACCTAAAAAAGTCATTTTTGCTGAAAAATTCAAGAAAATCTGTCAAAAAAAAAGCCTGCTTTTTGTCGTTTTAAATTTCAAATCCTGAAAAATCATTGTTTTTTTAACTAAGAAAATTTTCGTATTTTTTCAAAATCTCTGAAAATTCCGTTATTTTCCGAATTTTCCATTTTTTCAGAACTTCTCCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTGGTTTTTGGGATAAAA</pcr_primer_p1>
		<pcr_primer_p2>AATTTTTCTCACCTTTCCTCTAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTATGGAGGCAAAGGTTATTTTCCTTTTTTTTTATTTTTCAAAATTTTTCAATTCAATTTTTTTCAGAGGATGCCGGGTAGCGACGTACATCATCCTAGGAGTGTTAGTGTTGTTCGGTTTTGTGTATAATAGTAGAGGAAAGGTGAGAAAAATT</canonical_amplicon>
		<polymorphic_amplicon>AAATTGGTTTTTGGGATAAAAAAATTTGAAAATTTCGATTTTCAGGGTATAAACCAACGATGTTTATCGCTCGGAAAAAGCTACAAGTGCAGAGATTATGGAGGCAAAGGTTATTTTCCTTTTTTTTKATTTTTCAAAATTTTTCAATTCAATTTTTTTCAGAGGATGCCGGGTAGCGACGTACATCATCCTAGGAGTGTTAGTGTTGTTCGGTTTTGTGTATAATAGTAGAGGAAAGGTGAGAAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38757</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>24064</contig_pos>
        <strand>+</strand>
        <context>TTTCCCGAAT[A/G]GTTCCGGAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATGTCGTCATCGGTTCCATCCTCAATTCCGTAGAGAATATTTTCCCGAAT</left_flank>
        <right_flank>GTTCCGGAAAAAAGAGTTGGTTCTTGAGCAACCAAAGCAATCTTCGTGTG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACAACACAATTAGACAACAATTGGCTTCTCCTCCTCTTCGTCTATTCTGGTTCCCAACTGTTTCTGAACCAATTTGAAGTAGAGACCATCCCGATTCTTCATCAAATCATCATGAGTTCCCATTTCCGTCACGCTTCCCTTCTCGATGACAGCGATTCGATCGGCACGTCGAACAGTGGACAGACGATGGGCAATCACTAAAACAGTTCTCTCTTTGGCACATCTATTCAAAGCTTCTTGAACCATCGATTCGGATTCTGCGTCCAACGCAGATGTGGCCTCATCCAAGATTAGAACTCGAGGATTCCGAATGAGAGCTCGAGCGATGGCGATCCTTTGCTTTTGCCCTCCGGACATTTGTACTCCTTTCTCGCCGCATGTTGTATCGTATCCCTTCTCCATTTTCGATACGAACTCGTGAACATTGGCCATTTCAGAAACCCTCATCATGTCGTCATCGGTTCCATCCTCAATTCCGTAGAGAATATTTTCCCGAATGGTTCCGGAAAAAAGAGTTGGTTCTTGAGCAACCAAAGCAATCTTCGTGTGATAATGACGATGATCAATTTGCTGAATCGGTGTTCCATCCAGAAGAATTCTTCCAGATTGTGGAGAATAAAACAGTTGGAGTAGAGAGACGAGCGTCGATTTTCCATTTCCACTTGGTCCAACCAGTGCAACAGTTTTTCCTGGCTCAATTGATAGACTGATTCCATTCAAGATATTCGCAGTTTTCCTAGTTGGATAGGCAAATTCGACGTTTTCGAAAATGATGTTTCCGACGACATCTGGATTTTCACTTCCAACTTCGTAATCCAATTCTGGGATTCGATTCATGATGTGGATGACTTTTCTGGACGATCCAATTGTCTTCATAACATCGGAAAAGAGGGAACTGAATTCCTGAAAACAAAAAAAAACTAGTTTGAGGAACGCTAACAGAAAAAGTTGCTCACATTTAGAGTAACGTGTCGACACGAAAATCGATACGATTTGAGT</canonical>
            <polymorphic>CACAACACAATTAGACAACAATTGGCTTCTCCTCCTCTTCGTCTATTCTGGTTCCCAACTGTTTCTGAACCAATTTGAAGTAGAGACCATCCCGATTCTTCATCAAATCATCATGAGTTCCCATTTCCGTCACGCTTCCCTTCTCGATGACAGCGATTCGATCGGCACGTCGAACAGTGGACAGACGATGGGCAATCACTAAAACAGTTCTCTCTTTGGCACATCTATTCAAAGCTTCTTGAACCATCGATTCGGATTCTGCGTCCAACGCAGATGTGGCCTCATCCAAGATTAGAACTCGAGGATTCCGAATGAGAGCTCGAGCGATGGCGATCCTTTGCTTTTGCCCTCCGGACATTTGTACTCCTTTCTCGCCGCATGTTGTATCGTATCCCTTCTCCATTTTCGATACGAACTCGTGAACATTGGCCATTTCAGAAACCCTCATCATGTCGTCATCGGTTCCATCCTCAATTCCGTAGAGAATATTTTCCCGAATRGTTCCGGAAAAAAGAGTTGGTTCTTGAGCAACCAAAGCAATCTTCGTGTGATAATGACGATGATCAATTTGCTGAATCGGTGTTCCATCCAGAAGAATTCTTCCAGATTGTGGAGAATAAAACAGTTGGAGTAGAGAGACGAGCGTCGATTTTCCATTTCCACTTGGTCCAACCAGTGCAACAGTTTTTCCTGGCTCAATTGATAGACTGATTCCATTCAAGATATTCGCAGTTTTCCTAGTTGGATAGGCAAATTCGACGTTTTCGAAAATGATGTTTCCGACGACATCTGGATTTTCACTTCCAACTTCGTAATCCAATTCTGGGATTCGATTCATGATGTGGATGACTTTTCTGGACGATCCAATTGTCTTCATAACATCGGAAAAGAGGGAACTGAATTCCTGAAAACAAAAAAAAACTAGTTTGAGGAACGCTAACAGAAAAAGTTGCTCACATTTAGAGTAACGTGTCGACACGAAAATCGATACGATTTGAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>498 411 52 39</canonical_bands>
                <polymorphic_bands>537 411 52</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTTGTATCGTATCCCTTCTC</pcr_primer_p1>
		<pcr_primer_p2>CAACTGTTTTATTCTCCACAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGTTGTATCGTATCCCTTCTCCATTTTCGATACGAACTCGTGAACATTGGCCATTTCAGAAACCCTCATCATGTCGTCATCGGTTCCATCCTCAATTCCGTAGAGAATATTTTCCCGAATGGTTCCGGAAAAAAGAGTTGGTTCTTGAGCAACCAAAGCAATCTTCGTGTGATAATGACGATGATCAATTTGCTGAATCGGTGTTCCATCCAGAAGAATTCTTCCAGATTGTGGAGAATAAAACAGTTG</canonical_amplicon>
		<polymorphic_amplicon>ATGTTGTATCGTATCCCTTCTCCATTTTCGATACGAACTCGTGAACATTGGCCATTTCAGAAACCCTCATCATGTCGTCATCGGTTCCATCCTCAATTCCGTAGAGAATATTTTCCCGAATRGTTCCGGAAAAAAGAGTTGGTTCTTGAGCAACCAAAGCAATCTTCGTGTGATAATGACGATGATCAATTTGCTGAATCGGTGTTCCATCCAGAAGAATTCTTCCAGATTGTGGAGAATAAAACAGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38758</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>24130</contig_pos>
        <strand>+</strand>
        <context>GACGATGATC[A/G]ATTTGCTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTGGTTCTTGAGCAACCAAAGCAATCTTCGTGTGATAATGACGATGATC</left_flank>
        <right_flank>ATTTGCTGAATCGGTGTTCCATCCAGAAGAATTCTTCCAGATTGTGGAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACCAATTTGAAGTAGAGACCATCCCGATTCTTCATCAAATCATCATGAGTTCCCATTTCCGTCACGCTTCCCTTCTCGATGACAGCGATTCGATCGGCACGTCGAACAGTGGACAGACGATGGGCAATCACTAAAACAGTTCTCTCTTTGGCACATCTATTCAAAGCTTCTTGAACCATCGATTCGGATTCTGCGTCCAACGCAGATGTGGCCTCATCCAAGATTAGAACTCGAGGATTCCGAATGAGAGCTCGAGCGATGGCGATCCTTTGCTTTTGCCCTCCGGACATTTGTACTCCTTTCTCGCCGCATGTTGTATCGTATCCCTTCTCCATTTTCGATACGAACTCGTGAACATTGGCCATTTCAGAAACCCTCATCATGTCGTCATCGGTTCCATCCTCAATTCCGTAGAGAATATTTTCCCGAATGGTTCCGGAAAAAAGAGTTGGTTCTTGAGCAACCAAAGCAATCTTCGTGTGATAATGACGATGATCAATTTGCTGAATCGGTGTTCCATCCAGAAGAATTCTTCCAGATTGTGGAGAATAAAACAGTTGGAGTAGAGAGACGAGCGTCGATTTTCCATTTCCACTTGGTCCAACCAGTGCAACAGTTTTTCCTGGCTCAATTGATAGACTGATTCCATTCAAGATATTCGCAGTTTTCCTAGTTGGATAGGCAAATTCGACGTTTTCGAAAATGATGTTTCCGACGACATCTGGATTTTCACTTCCAACTTCGTAATCCAATTCTGGGATTCGATTCATGATGTGGATGACTTTTCTGGACGATCCAATTGTCTTCATAACATCGGAAAAGAGGGAACTGAATTCCTGAAAACAAAAAAAAACTAGTTTGAGGAACGCTAACAGAAAAAGTTGCTCACATTTAGAGTAACGTGTCGACACGAAAATCGATACGATTTGAGTCGGTCAGTCGGACTATTGACGTCGATAAAAATCGTGTCGACTGACACCAGAAGACACAGTATCGAC</canonical>
            <polymorphic>GAACCAATTTGAAGTAGAGACCATCCCGATTCTTCATCAAATCATCATGAGTTCCCATTTCCGTCACGCTTCCCTTCTCGATGACAGCGATTCGATCGGCACGTCGAACAGTGGACAGACGATGGGCAATCACTAAAACAGTTCTCTCTTTGGCACATCTATTCAAAGCTTCTTGAACCATCGATTCGGATTCTGCGTCCAACGCAGATGTGGCCTCATCCAAGATTAGAACTCGAGGATTCCGAATGAGAGCTCGAGCGATGGCGATCCTTTGCTTTTGCCCTCCGGACATTTGTACTCCTTTCTCGCCGCATGTTGTATCGTATCCCTTCTCCATTTTCGATACGAACTCGTGAACATTGGCCATTTCAGAAACCCTCATCATGTCGTCATCGGTTCCATCCTCAATTCCGTAGAGAATATTTTCCCGAATGGTTCCGGAAAAAAGAGTTGGTTCTTGAGCAACCAAAGCAATCTTCGTGTGATAATGACGATGATCRATTTGCTGAATCGGTGTTCCATCCAGAAGAATTCTTCCAGATTGTGGAGAATAAAACAGTTGGAGTAGAGAGACGAGCGTCGATTTTCCATTTCCACTTGGTCCAACCAGTGCAACAGTTTTTCCTGGCTCAATTGATAGACTGATTCCATTCAAGATATTCGCAGTTTTCCTAGTTGGATAGGCAAATTCGACGTTTTCGAAAATGATGTTTCCGACGACATCTGGATTTTCACTTCCAACTTCGTAATCCAATTCTGGGATTCGATTCATGATGTGGATGACTTTTCTGGACGATCCAATTGTCTTCATAACATCGGAAAAGAGGGAACTGAATTCCTGAAAACAAAAAAAAACTAGTTTGAGGAACGCTAACAGAAAAAGTTGCTCACATTTAGAGTAACGTGTCGACACGAAAATCGATACGATTTGAGTCGGTCAGTCGGACTATTGACGTCGATAAAAATCGTGTCGACTGACACCAGAAGACACAGTATCGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>401 167 102 93 66 55 47 34 30 5</canonical_bands>
                <polymorphic_bands>401 167 123 102 66 55 47 34 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTTGTATCGTATCCCTTCTC</pcr_primer_p1>
		<pcr_primer_p2>CAACTGTTTTATTCTCCACAATC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATGTTGTATCGTATCCCTTCTCCATTTTCGATACGAACTCGTGAACATTGGCCATTTCAGAAACCCTCATCATGTCGTCATCGGTTCCATCCTCAATTCCGTAGAGAATATTTTCCCGAATGGTTCCGGAAAAAAGAGTTGGTTCTTGAGCAACCAAAGCAATCTTCGTGTGATAATGACGATGATCAATTTGCTGAATCGGTGTTCCATCCAGAAGAATTCTTCCAGATTGTGGAGAATAAAACAGTTG</canonical_amplicon>
		<polymorphic_amplicon>ATGTTGTATCGTATCCCTTCTCCATTTTCGATACGAACTCGTGAACATTGGCCATTTCAGAAACCCTCATCATGTCGTCATCGGTTCCATCCTCAATTCCGTAGAGAATATTTTCCCGAATGGTTCCGGAAAAAAGAGTTGGTTCTTGAGCAACCAAAGCAATCTTCGTGTGATAATGACGATGATCRATTTGCTGAATCGGTGTTCCATCCAGAAGAATTCTTCCAGATTGTGGAGAATAAAACAGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38759</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>24472</contig_pos>
        <strand>+</strand>
        <context>TGAATTCCTG[A/T]AAACAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACGATCCAATTGTCTTCATAACATCGGAAAAGAGGGAACTGAATTCCTG</left_flank>
        <right_flank>AAACAAAAAAAAACTAGTTTGAGGAACGCTAACAGAAAAAGTTGCTCACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATACGAACTCGTGAACATTGGCCATTTCAGAAACCCTCATCATGTCGTCATCGGTTCCATCCTCAATTCCGTAGAGAATATTTTCCCGAATGGTTCCGGAAAAAAGAGTTGGTTCTTGAGCAACCAAAGCAATCTTCGTGTGATAATGACGATGATCAATTTGCTGAATCGGTGTTCCATCCAGAAGAATTCTTCCAGATTGTGGAGAATAAAACAGTTGGAGTAGAGAGACGAGCGTCGATTTTCCATTTCCACTTGGTCCAACCAGTGCAACAGTTTTTCCTGGCTCAATTGATAGACTGATTCCATTCAAGATATTCGCAGTTTTCCTAGTTGGATAGGCAAATTCGACGTTTTCGAAAATGATGTTTCCGACGACATCTGGATTTTCACTTCCAACTTCGTAATCCAATTCTGGGATTCGATTCATGATGTGGATGACTTTTCTGGACGATCCAATTGTCTTCATAACATCGGAAAAGAGGGAACTGAATTCCTGAAAACAAAAAAAAACTAGTTTGAGGAACGCTAACAGAAAAAGTTGCTCACATTTAGAGTAACGTGTCGACACGAAAATCGATACGATTTGAGTCGGTCAGTCGGACTATTGACGTCGATAAAAATCGTGTCGACTGACACCAGAAGACACAGTATCGACACAGAGTCGTGTCGACTCGAGTCGACACGACACGCCATTTCACACGCGCTCTATTGAACAATTTGAATTTATTTCAACTTTTTCGTTAAATTTCTTCTTTAAAGGTGGGGGGACAGTAGATTTTACGGAGGATTTTTGGGGCCAGAGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGCCCTCGCCTTTATGTATGCATCGGGCAGCGGCTTTCTCTTTGCACGCGTAGCTCAGTCGGTAGCGGCGCCGCACCTTCAACACTCGCCTCGACAAGTTCAACTCCTCGAGGAGAATATTTAAAAGGAATTTCGACAAC</canonical>
            <polymorphic>ATACGAACTCGTGAACATTGGCCATTTCAGAAACCCTCATCATGTCGTCATCGGTTCCATCCTCAATTCCGTAGAGAATATTTTCCCGAATGGTTCCGGAAAAAAGAGTTGGTTCTTGAGCAACCAAAGCAATCTTCGTGTGATAATGACGATGATCAATTTGCTGAATCGGTGTTCCATCCAGAAGAATTCTTCCAGATTGTGGAGAATAAAACAGTTGGAGTAGAGAGACGAGCGTCGATTTTCCATTTCCACTTGGTCCAACCAGTGCAACAGTTTTTCCTGGCTCAATTGATAGACTGATTCCATTCAAGATATTCGCAGTTTTCCTAGTTGGATAGGCAAATTCGACGTTTTCGAAAATGATGTTTCCGACGACATCTGGATTTTCACTTCCAACTTCGTAATCCAATTCTGGGATTCGATTCATGATGTGGATGACTTTTCTGGACGATCCAATTGTCTTCATAACATCGGAAAAGAGGGAACTGAATTCCTGWAAACAAAAAAAAACTAGTTTGAGGAACGCTAACAGAAAAAGTTGCTCACATTTAGAGTAACGTGTCGACACGAAAATCGATACGATTTGAGTCGGTCAGTCGGACTATTGACGTCGATAAAAATCGTGTCGACTGACACCAGAAGACACAGTATCGACACAGAGTCGTGTCGACTCGAGTCGACACGACACGCCATTTCACACGCGCTCTATTGAACAATTTGAATTTATTTCAACTTTTTCGTTAAATTTCTTCTTTAAAGGTGGGGGGACAGTAGATTTTACGGAGGATTTTTGGGGCCAGAGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGCCCTCGCCTTTATGTATGCATCGGGCAGCGGCTTTCTCTTTGCACGCGTAGCTCAGTCGGTAGCGGCGCCGCACCTTCAACACTCGCCTCGACAAGTTCAACTCCTCGAGGAGAATATTTAAAAGGAATTTCGACAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>504 116 75 71 66 49 46 19 19 14 11 10</canonical_bands>
                <polymorphic_bands>553 116 75 71 66 46 19 19 14 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACGATCCAATTGTCTTCATA</pcr_primer_p1>
		<pcr_primer_p2>GAAATTTAACGAAAAAGTTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>GACGATCCAATTGTCTTCATAACATCGGAAAAGAGGGAACTGAATTCCTGAAAACAAAAAAAAACTAGTTTGAGGAACGCTAACAGAAAAAGTTGCTCACATTTAGAGTAACGTGTCGACACGAAAATCGATACGATTTGAGTCGGTCAGTCGGACTATTGACGTCGATAAAAATCGTGTCGACTGACACCAGAAGACACAGTATCGACACAGAGTCGTGTCGACTCGAGTCGACACGACACGCCATTTCACACGCGCTCTATTGAACAATTTGAATTTATTTCAACTTTTTCGTTAAATTTC</canonical_amplicon>
		<polymorphic_amplicon>GACGATCCAATTGTCTTCATAACATCGGAAAAGAGGGAACTGAATTCCTGWAAACAAAAAAAAACTAGTTTGAGGAACGCTAACAGAAAAAGTTGCTCACATTTAGAGTAACGTGTCGACACGAAAATCGATACGATTTGAGTCGGTCAGTCGGACTATTGACGTCGATAAAAATCGTGTCGACTGACACCAGAAGACACAGTATCGACACAGAGTCGTGTCGACTCGAGTCGACACGACACGCCATTTCACACGCGCTCTATTGAACAATTTGAATTTATTTCAACTTTTTCGTTAAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38760</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>24496</contig_pos>
        <strand></strand>
        <context>CTAGTTTGAG[G/A]AACGCWAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCGGAAAAGAGGGAACTGAATTCCTGAAAACAAAAAAAAACTAGTTTGAG</left_flank>
        <right_flank>AACGCTAACAGAAAAAGTTGCTCACATTTAGAGTAACGTGTCGACACGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAGAAACCCTCATCATGTCGTCATCGGTTCCATCCTCAATTCCGTAGAGAATATTTTCCCGAATGGTTCCGGAAAAAAGAGTTGGTTCTTGAGCAACCAAAGCAATCTTCGTGTGATAATGACGATGATCAATTTGCTGAATCGGTGTTCCATCCAGAAGAATTCTTCCAGATTGTGGAGAATAAAACAGTTGGAGTAGAGAGACGAGCGTCGATTTTCCATTTCCACTTGGTCCAACCAGTGCAACAGTTTTTCCTGGCTCAATTGATAGACTGATTCCATTCAAGATATTCGCAGTTTTCCTAGTTGGATAGGCAAATTCGACGTTTTCGAAAATGATGTTTCCGACGACATCTGGATTTTCACTTCCAACTTCGTAATCCAATTCTGGGATTCGATTCATGATGTGGATGACTTTTCTGGACGATCCAATTGTCTTCATAACATCGGAAAAGAGGGAACTGAATTCCTGAAAACAAAAAAAAACTAGTTTGAGGAACGCTAACAGAAAAAGTTGCTCACATTTAGAGTAACGTGTCGACACGAAAATCGATACGATTTGAGTCGGTCAGTCGGACTATTGACGTCGATAAAAATCGTGTCGACTGACACCAGAAGACACAGTATCGACACAGAGTCGTGTCGACTCGAGTCGACACGACACGCCATTTCACACGCGCTCTATTGAACAATTTGAATTTATTTCAACTTTTTCGTTAAATTTCTTCTTTAAAGGTGGGGGGACAGTAGATTTTACGGAGGATTTTTGGGGCCAGAGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGCCCTCGCCTTTATGTATGCATCGGGCAGCGGCTTTCTCTTTGCACGCGTAGCTCAGTCGGTAGCGGCGCCGCACCTTCAACACTCGCCTCGACAAGTTCAACTCCTCGAGGAGAATATTTAAAAGGAATTTCGACAACATTATTTTTCTCATGTCCCCCCAC</canonical>
            <polymorphic>TTTCAGAAACCCTCATCATGTCGTCATCGGTTCCATCCTCAATTCCGTAGAGAATATTTTCCCGAATGGTTCCGGAAAAAAGAGTTGGTTCTTGAGCAACCAAAGCAATCTTCGTGTGATAATGACGATGATCAATTTGCTGAATCGGTGTTCCATCCAGAAGAATTCTTCCAGATTGTGGAGAATAAAACAGTTGGAGTAGAGAGACGAGCGTCGATTTTCCATTTCCACTTGGTCCAACCAGTGCAACAGTTTTTCCTGGCTCAATTGATAGACTGATTCCATTCAAGATATTCGCAGTTTTCCTAGTTGGATAGGCAAATTCGACGTTTTCGAAAATGATGTTTCCGACGACATCTGGATTTTCACTTCCAACTTCGTAATCCAATTCTGGGATTCGATTCATGATGTGGATGACTTTTCTGGACGATCCAATTGTCTTCATAACATCGGAAAAGAGGGAACTGAATTCCTGAAAACAAAAAAAAACTAGTTTGAGRAACGCTAACAGAAAAAGTTGCTCACATTTAGAGTAACGTGTCGACACGAAAATCGATACGATTTGAGTCGGTCAGTCGGACTATTGACGTCGATAAAAATCGTGTCGACTGACACCAGAAGACACAGTATCGACACAGAGTCGTGTCGACTCGAGTCGACACGACACGCCATTTCACACGCGCTCTATTGAACAATTTGAATTTATTTCAACTTTTTCGTTAAATTTCTTCTTTAAAGGTGGGGGGACAGTAGATTTTACGGAGGATTTTTGGGGCCAGAGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGCCCTCGCCTTTATGTATGCATCGGGCAGCGGCTTTCTCTTTGCACGCGTAGCTCAGTCGGTAGCGGCGCCGCACCTTCAACACTCGCCTCGACAAGTTCAACTCCTCGAGGAGAATATTTAAAAGGAATTTCGACAACATTATTTTTCTCATGTCCCCCCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATAACATCGGAAAAGAGG</pcr_primer_p1>
		<pcr_primer_p2>GAAATTTAACGAAAAAGTTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>TCATAACATCGGAAAAGAGGGAACTGAATTCCTGAAAACAAAAAAAAACTAGTTTGAGGAACGCTAACAGAAAAAGTTGCTCACATTTAGAGTAACGTGTCGACACGAAAATCGATACGATTTGAGTCGGTCAGTCGGACTATTGACGTCGATAAAAATCGTGTCGACTGACACCAGAAGACACAGTATCGACACAGAGTCGTGTCGACTCGAGTCGACACGACACGCCATTTCACACGCGCTCTATTGAACAATTTGAATTTATTTCAACTTTTTCGTTAAATTTC</canonical_amplicon>
		<polymorphic_amplicon>TCATAACATCGGAAAAGAGGGAACTGAATTCCTGAAAACAAAAAAAAACTAGTTTGAGRAACGCTAACAGAAAAAGTTGCTCACATTTAGAGTAACGTGTCGACACGAAAATCGATACGATTTGAGTCGGTCAGTCGGACTATTGACGTCGATAAAAATCGTGTCGACTGACACCAGAAGACACAGTATCGACACAGAGTCGTGTCGACTCGAGTCGACACGACACGCCATTTCACACGCGCTCTATTGAACAATTTGAATTTATTTCAACTTTTTCGTTAAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38761</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>24502</contig_pos>
        <strand></strand>
        <context>TGAGRAACGC[T/A]AACAGAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAGAGGGAACTGAATTCCTGAAAACAAAAAAAAACTAGTTTGAGGAACGC</left_flank>
        <right_flank>AACAGAAAAAGTTGCTCACATTTAGAGTAACGTGTCGACACGAAAATCGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACCCTCATCATGTCGTCATCGGTTCCATCCTCAATTCCGTAGAGAATATTTTCCCGAATGGTTCCGGAAAAAAGAGTTGGTTCTTGAGCAACCAAAGCAATCTTCGTGTGATAATGACGATGATCAATTTGCTGAATCGGTGTTCCATCCAGAAGAATTCTTCCAGATTGTGGAGAATAAAACAGTTGGAGTAGAGAGACGAGCGTCGATTTTCCATTTCCACTTGGTCCAACCAGTGCAACAGTTTTTCCTGGCTCAATTGATAGACTGATTCCATTCAAGATATTCGCAGTTTTCCTAGTTGGATAGGCAAATTCGACGTTTTCGAAAATGATGTTTCCGACGACATCTGGATTTTCACTTCCAACTTCGTAATCCAATTCTGGGATTCGATTCATGATGTGGATGACTTTTCTGGACGATCCAATTGTCTTCATAACATCGGAAAAGAGGGAACTGAATTCCTGAAAACAAAAAAAAACTAGTTTGAGGAACGCTAACAGAAAAAGTTGCTCACATTTAGAGTAACGTGTCGACACGAAAATCGATACGATTTGAGTCGGTCAGTCGGACTATTGACGTCGATAAAAATCGTGTCGACTGACACCAGAAGACACAGTATCGACACAGAGTCGTGTCGACTCGAGTCGACACGACACGCCATTTCACACGCGCTCTATTGAACAATTTGAATTTATTTCAACTTTTTCGTTAAATTTCTTCTTTAAAGGTGGGGGGACAGTAGATTTTACGGAGGATTTTTGGGGCCAGAGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGCCCTCGCCTTTATGTATGCATCGGGCAGCGGCTTTCTCTTTGCACGCGTAGCTCAGTCGGTAGCGGCGCCGCACCTTCAACACTCGCCTCGACAAGTTCAACTCCTCGAGGAGAATATTTAAAAGGAATTTCGACAACATTATTTTTCTCATGTCCCCCCACCTTTAA</canonical>
            <polymorphic>AAACCCTCATCATGTCGTCATCGGTTCCATCCTCAATTCCGTAGAGAATATTTTCCCGAATGGTTCCGGAAAAAAGAGTTGGTTCTTGAGCAACCAAAGCAATCTTCGTGTGATAATGACGATGATCAATTTGCTGAATCGGTGTTCCATCCAGAAGAATTCTTCCAGATTGTGGAGAATAAAACAGTTGGAGTAGAGAGACGAGCGTCGATTTTCCATTTCCACTTGGTCCAACCAGTGCAACAGTTTTTCCTGGCTCAATTGATAGACTGATTCCATTCAAGATATTCGCAGTTTTCCTAGTTGGATAGGCAAATTCGACGTTTTCGAAAATGATGTTTCCGACGACATCTGGATTTTCACTTCCAACTTCGTAATCCAATTCTGGGATTCGATTCATGATGTGGATGACTTTTCTGGACGATCCAATTGTCTTCATAACATCGGAAAAGAGGGAACTGAATTCCTGAAAACAAAAAAAAACTAGTTTGAGGAACGCWAACAGAAAAAGTTGCTCACATTTAGAGTAACGTGTCGACACGAAAATCGATACGATTTGAGTCGGTCAGTCGGACTATTGACGTCGATAAAAATCGTGTCGACTGACACCAGAAGACACAGTATCGACACAGAGTCGTGTCGACTCGAGTCGACACGACACGCCATTTCACACGCGCTCTATTGAACAATTTGAATTTATTTCAACTTTTTCGTTAAATTTCTTCTTTAAAGGTGGGGGGACAGTAGATTTTACGGAGGATTTTTGGGGCCAGAGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGCCCTCGCCTTTATGTATGCATCGGGCAGCGGCTTTCTCTTTGCACGCGTAGCTCAGTCGGTAGCGGCGCCGCACCTTCAACACTCGCCTCGACAAGTTCAACTCCTCGAGGAGAATATTTAAAAGGAATTTCGACAACATTATTTTTCTCATGTCCCCCCACCTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATAACATCGGAAAAGAGG</pcr_primer_p1>
		<pcr_primer_p2>GAAATTTAACGAAAAAGTTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>TCATAACATCGGAAAAGAGGGAACTGAATTCCTGAAAACAAAAAAAAACTAGTTTGAGGAACGCTAACAGAAAAAGTTGCTCACATTTAGAGTAACGTGTCGACACGAAAATCGATACGATTTGAGTCGGTCAGTCGGACTATTGACGTCGATAAAAATCGTGTCGACTGACACCAGAAGACACAGTATCGACACAGAGTCGTGTCGACTCGAGTCGACACGACACGCCATTTCACACGCGCTCTATTGAACAATTTGAATTTATTTCAACTTTTTCGTTAAATTTC</canonical_amplicon>
		<polymorphic_amplicon>TCATAACATCGGAAAAGAGGGAACTGAATTCCTGAAAACAAAAAAAAACTAGTTTGAGGAACGCWAACAGAAAAAGTTGCTCACATTTAGAGTAACGTGTCGACACGAAAATCGATACGATTTGAGTCGGTCAGTCGGACTATTGACGTCGATAAAAATCGTGTCGACTGACACCAGAAGACACAGTATCGACACAGAGTCGTGTCGACTCGAGTCGACACGACACGCCATTTCACACGCGCTCTATTGAACAATTTGAATTTATTTCAACTTTTTCGTTAAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38762</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>24568</contig_pos>
        <strand></strand>
        <context>tttgagtcgg[T/C]cagtcggact</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCACATTTAGAGTAACGTGTCGACACGAAAATCGATACGATTTGAGTCGG</left_flank>
        <right_flank>CAGTCGGACTATTGACGTCGATAAAAATCGTGTCGACTGACACCAGAAGA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGAAAAAAGAGTTGGTTCTTGAGCAACCAAAGCAATCTTCGTGTGATAATGACGATGATCAATTTGCTGAATCGGTGTTCCATCCAGAAGAATTCTTCCAGATTGTGGAGAATAAAACAGTTGGAGTAGAGAGACGAGCGTCGATTTTCCATTTCCACTTGGTCCAACCAGTGCAACAGTTTTTCCTGGCTCAATTGATAGACTGATTCCATTCAAGATATTCGCAGTTTTCCTAGTTGGATAGGCAAATTCGACGTTTTCGAAAATGATGTTTCCGACGACATCTGGATTTTCACTTCCAACTTCGTAATCCAATTCTGGGATTCGATTCATGATGTGGATGACTTTTCTGGACGATCCAATTGTCTTCATAACATCGGAAAAGAGGGAACTGAATTCCTGAAAACAAAAAAAAACTAGTTTGAGGAACGCTAACAGAAAAAGTTGCTCACATTTAGAGTAACGTGTCGACACGAAAATCGATACGATTTGAGTCGGTCAGTCGGACTATTGACGTCGATAAAAATCGTGTCGACTGACACCAGAAGACACAGTATCGACACAGAGTCGTGTCGACTCGAGTCGACACGACACGCCATTTCACACGCGCTCTATTGAACAATTTGAATTTATTTCAACTTTTTCGTTAAATTTCTTCTTTAAAGGTGGGGGGACAGTAGATTTTACGGAGGATTTTTGGGGCCAGAGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGCCCTCGCCTTTATGTATGCATCGGGCAGCGGCTTTCTCTTTGCACGCGTAGCTCAGTCGGTAGCGGCGCCGCACCTTCAACACTCGCCTCGACAAGTTCAACTCCTCGAGGAGAATATTTAAAAGGAATTTCGACAACATTATTTTTCTCATGTCCCCCCACCTTTAAAACATTAAAGTTGACGTGGCCTAAATTTTGCAAGTTGAGTTTTCTAGGCCACCATCTTTTTTGCCT</canonical>
            <polymorphic>CGGAAAAAAGAGTTGGTTCTTGAGCAACCAAAGCAATCTTCGTGTGATAATGACGATGATCAATTTGCTGAATCGGTGTTCCATCCAGAAGAATTCTTCCAGATTGTGGAGAATAAAACAGTTGGAGTAGAGAGACGAGCGTCGATTTTCCATTTCCACTTGGTCCAACCAGTGCAACAGTTTTTCCTGGCTCAATTGATAGACTGATTCCATTCAAGATATTCGCAGTTTTCCTAGTTGGATAGGCAAATTCGACGTTTTCGAAAATGATGTTTCCGACGACATCTGGATTTTCACTTCCAACTTCGTAATCCAATTCTGGGATTCGATTCATGATGTGGATGACTTTTCTGGACGATCCAATTGTCTTCATAACATCGGAAAAGAGGGAACTGAATTCCTGAAAACAAAAAAAAACTAGTTTGAGGAACGCTAACAGAAAAAGTTGCTCACATTTAGAGTAACGTGTCGACACGAAAATCGATACGATTTGAGTCGGYCAGTCGGACTATTGACGTCGATAAAAATCGTGTCGACTGACACCAGAAGACACAGTATCGACACAGAGTCGTGTCGACTCGAGTCGACACGACACGCCATTTCACACGCGCTCTATTGAACAATTTGAATTTATTTCAACTTTTTCGTTAAATTTCTTCTTTAAAGGTGGGGGGACAGTAGATTTTACGGAGGATTTTTGGGGCCAGAGTATGCATTCTACCGTAACGGTGTACAACGCTTAATGTCACTCTGCGTACAGCTGTCGCCCTCGCCTTTATGTATGCATCGGGCAGCGGCTTTCTCTTTGCACGCGTAGCTCAGTCGGTAGCGGCGCCGCACCTTCAACACTCGCCTCGACAAGTTCAACTCCTCGAGGAGAATATTTAAAAGGAATTTCGACAACATTATTTTTCTCATGTCCCCCCACCTTTAAAACATTAAAGTTGACGTGGCCTAAATTTTGCAAGTTGAGTTTTCTAGGCCACCATCTTTTTTGCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAGAAAAAGTTGCTCACATT</pcr_primer_p1>
		<pcr_primer_p2>CCACCTTTAAAGAAGAAATTTAAC</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>AACAGAAAAAGTTGCTCACATTTAGAGTAACGTGTCGACACGAAAATCGATACGATTTGAGTCGGTCAGTCGGACTATTGACGTCGATAAAAATCGTGTCGACTGACACCAGAAGACACAGTATCGACACAGAGTCGTGTCGACTCGAGTCGACACGACACGCCATTTCACACGCGCTCTATTGAACAATTTGAATTTATTTCAACTTTTTCGTTAAATTTCTTCTTTAAAGGTGG</canonical_amplicon>
		<polymorphic_amplicon>AACAGAAAAAGTTGCTCACATTTAGAGTAACGTGTCGACACGAAAATCGATACGATTTGAGTCGGYCAGTCGGACTATTGACGTCGATAAAAATCGTGTCGACTGACACCAGAAGACACAGTATCGACACAGAGTCGTGTCGACTCGAGTCGACACGACACGCCATTTCACACGCGCTCTATTGAACAATTTGAATTTATTTCAACTTTTTCGTTAAATTTCTTCTTTAAAGGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38763</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>50930</contig_pos>
        <strand>+</strand>
        <context>AGTGACAAAA[C/G]CGACACCGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGAAATTTCATGGTCGTCGGACTACGGTCATTTGTGACCCAGTGACAAAA</left_flank>
        <right_flank>CGACACCGTACCCCAGCCAAGCCATGTGTTCGAAGATCGGTGAAGAATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCTCGAAATTCTAAAATTCCAAAAACATTGGATTCTCAAAATTCCAGAAATTTGAAAAATTCAGAAAAAAGATTCTCGAAATCTAGGAATTTCAGATTTTTAGATCATGAAACTTTTAGAGTTCATGATAATTCAAAAATCGAAAATTAAAAATTACCTGTTTCTTCATCCGAGGCGCATAATTGGCTGGTGCTTGTGAATTGATCTTCTCCTCACAAATCGCCCATAACCCTCCGGGTCCTGAAATTGGATTCGAATGATTCATGAAAGCAAACTCAGCTCATCAAGAGCTTCAAAATGAGTATAAACAAGGTGACTTTTCGAAAAAAAATTTTTTGATCCAAATTTTTCCCTAGTCATGTCTGTACTCATTTTGAAGCTCTTTTCCCGCCAAGTTCAAATTTTCTGATAAAATTGACTTACCAGTATCATGTTTTCGTTTTAAATGAAATTTCATGGTCGTCGGACTACGGTCATTTGTGACCCAGTGACAAAAGCGACACCGTACCCCAGCCAAGCCATGTGTTCGAAGATCGGTGAAGAATTCCCAGACCTGAAATTTTTCTGGGNNNNNNNNNNNATGAAATTTTGGAACTTCTGAACTTTTTGAGGTCTCTAAATTTTTTGAAATTTCAGAACTTTCAGGAATTTCGAAATTTATGAGTCTCCGAATTCTCGAATTTCCGAATTTCCAAAGTTTTGAATTTCTGAATTTCCTATAACTTCTGGAACATCCAAACTCACATTTTTGGCATTATTCTCGAAACAGTACTCTCCAGATTTTCTCGCATTAAACGTAAAAATCAAATCGGAATCTGTTGCGATTTGCAAGAGTGCCGCGATACTTGACCCATCACTTAAATGGAAATCTGATGAAGACGTGGATGTTGAAGTGCTTCCACTGACCGACGACGAAGACGAATCTTCTTCTTTCTAAAAGGAAAAAAAATGAGCAAATTCCACACATTTTAACAGTTCACAGATTTTTCATAGCTAT</canonical>
            <polymorphic>AATTCTCGAAATTCTAAAATTCCAAAAACATTGGATTCTCAAAATTCCAGAAATTTGAAAAATTCAGAAAAAAGATTCTCGAAATCTAGGAATTTCAGATTTTTAGATCATGAAACTTTTAGAGTTCATGATAATTCAAAAATCGAAAATTAAAAATTACCTGTTTCTTCATCCGAGGCGCATAATTGGCTGGTGCTTGTGAATTGATCTTCTCCTCACAAATCGCCCATAACCCTCCGGGTCCTGAAATTGGATTCGAATGATTCATGAAAGCAAACTCAGCTCATCAAGAGCTTCAAAATGAGTATAAACAAGGTGACTTTTCGAAAAAAAATTTTTTGATCCAAATTTTTCCCTAGTCATGTCTGTACTCATTTTGAAGCTCTTTTCCCGCCAAGTTCAAATTTTCTGATAAAATTGACTTACCAGTATCATGTTTTCGTTTTAAATGAAATTTCATGGTCGTCGGACTACGGTCATTTGTGACCCAGTGACAAAASCGACACCGTACCCCAGCCAAGCCATGTGTTCGAAGATCGGTGAAGAATTCCCAGACCTGAAATTTTTCTGGGNNNNNNNNNNNATGAAATTTTGGAACTTCTGAACTTTTTGAGGTCTCTAAATTTTTTGAAATTTCAGAACTTTCAGGAATTTCGAAATTTATGAGTCTCCGAATTCTCGAATTTCCGAATTTCCAAAGTTTTGAATTTCTGAATTTCCTATAACTTCTGGAACATCCAAACTCACATTTTTGGCATTATTCTCGAAACAGTACTCTCCAGATTTTCTCGCATTAAACGTAAAAATCAAATCGGAATCTGTTGCGATTTGCAAGAGTGCCGCGATACTTGACCCATCACTTAAATGGAAATCTGATGAAGACGTGGATGTTGAAGTGCTTCCACTGACCGACGACGAAGACGAATCTTCTTCTTTCTAAAAGGAAAAAAAATGAGCAAATTCCACACATTTTAACAGTTCACAGATTTTTCATAGCTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACCAGTATCATGTTTTCGTTTT</pcr_primer_p1>
		<pcr_primer_p2>GGAATTCTTCACCGATCTTC</pcr_primer_p2>
		<pcr_amplicon_size>128</pcr_amplicon_size>
		<canonical_amplicon>TACCAGTATCATGTTTTCGTTTTAAATGAAATTTCATGGTCGTCGGACTACGGTCATTTGTGACCCAGTGACAAAAGCGACACCGTACCCCAGCCAAGCCATGTGTTCGAAGATCGGTGAAGAATTCC</canonical_amplicon>
		<polymorphic_amplicon>TACCAGTATCATGTTTTCGTTTTAAATGAAATTTCATGGTCGTCGGACTACGGTCATTTGTGACCCAGTGACAAAASCGACACCGTACCCCAGCCAAGCCATGTGTTCGAAGATCGGTGAAGAATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38764</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>50951</contig_pos>
        <strand>+</strand>
        <context>CCCCAGCCAA[A/G]CCATGTGTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTACGGTCATTTGTGACCCAGTGACAAAAGCGACACCGTACCCCAGCCAA</left_flank>
        <right_flank>CCATGTGTTCGAAGATCGGTGAAGAATTCCCAGACCTGAAATTTTTCTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAAAACATTGGATTCTCAAAATTCCAGAAATTTGAAAAATTCAGAAAAAAGATTCTCGAAATCTAGGAATTTCAGATTTTTAGATCATGAAACTTTTAGAGTTCATGATAATTCAAAAATCGAAAATTAAAAATTACCTGTTTCTTCATCCGAGGCGCATAATTGGCTGGTGCTTGTGAATTGATCTTCTCCTCACAAATCGCCCATAACCCTCCGGGTCCTGAAATTGGATTCGAATGATTCATGAAAGCAAACTCAGCTCATCAAGAGCTTCAAAATGAGTATAAACAAGGTGACTTTTCGAAAAAAAATTTTTTGATCCAAATTTTTCCCTAGTCATGTCTGTACTCATTTTGAAGCTCTTTTCCCGCCAAGTTCAAATTTTCTGATAAAATTGACTTACCAGTATCATGTTTTCGTTTTAAATGAAATTTCATGGTCGTCGGACTACGGTCATTTGTGACCCAGTGACAAAAGCGACACCGTACCCCAGCCAAGCCATGTGTTCGAAGATCGGTGAAGAATTCCCAGACCTGAAATTTTTCTGGGNNNNNNNNNNNATGAAATTTTGGAACTTCTGAACTTTTTGAGGTCTCTAAATTTTTTGAAATTTCAGAACTTTCAGGAATTTCGAAATTTATGAGTCTCCGAATTCTCGAATTTCCGAATTTCCAAAGTTTTGAATTTCTGAATTTCCTATAACTTCTGGAACATCCAAACTCACATTTTTGGCATTATTCTCGAAACAGTACTCTCCAGATTTTCTCGCATTAAACGTAAAAATCAAATCGGAATCTGTTGCGATTTGCAAGAGTGCCGCGATACTTGACCCATCACTTAAATGGAAATCTGATGAAGACGTGGATGTTGAAGTGCTTCCACTGACCGACGACGAAGACGAATCTTCTTCTTTCTAAAAGGAAAAAAAATGAGCAAATTCCACACATTTTAACAGTTCACAGATTTTTCATAGCTATAACGAGTCTCGAGATAAGCGC</canonical>
            <polymorphic>CCAAAAACATTGGATTCTCAAAATTCCAGAAATTTGAAAAATTCAGAAAAAAGATTCTCGAAATCTAGGAATTTCAGATTTTTAGATCATGAAACTTTTAGAGTTCATGATAATTCAAAAATCGAAAATTAAAAATTACCTGTTTCTTCATCCGAGGCGCATAATTGGCTGGTGCTTGTGAATTGATCTTCTCCTCACAAATCGCCCATAACCCTCCGGGTCCTGAAATTGGATTCGAATGATTCATGAAAGCAAACTCAGCTCATCAAGAGCTTCAAAATGAGTATAAACAAGGTGACTTTTCGAAAAAAAATTTTTTGATCCAAATTTTTCCCTAGTCATGTCTGTACTCATTTTGAAGCTCTTTTCCCGCCAAGTTCAAATTTTCTGATAAAATTGACTTACCAGTATCATGTTTTCGTTTTAAATGAAATTTCATGGTCGTCGGACTACGGTCATTTGTGACCCAGTGACAAAAGCGACACCGTACCCCAGCCAARCCATGTGTTCGAAGATCGGTGAAGAATTCCCAGACCTGAAATTTTTCTGGGNNNNNNNNNNNATGAAATTTTGGAACTTCTGAACTTTTTGAGGTCTCTAAATTTTTTGAAATTTCAGAACTTTCAGGAATTTCGAAATTTATGAGTCTCCGAATTCTCGAATTTCCGAATTTCCAAAGTTTTGAATTTCTGAATTTCCTATAACTTCTGGAACATCCAAACTCACATTTTTGGCATTATTCTCGAAACAGTACTCTCCAGATTTTCTCGCATTAAACGTAAAAATCAAATCGGAATCTGTTGCGATTTGCAAGAGTGCCGCGATACTTGACCCATCACTTAAATGGAAATCTGATGAAGACGTGGATGTTGAAGTGCTTCCACTGACCGACGACGAAGACGAATCTTCTTCTTTCTAAAAGGAAAAAAAATGAGCAAATTCCACACATTTTAACAGTTCACAGATTTTTCATAGCTATAACGAGTCTCGAGATAAGCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>475 168 134 93 89 25 11 5</canonical_bands>
                <polymorphic_bands>480 168 134 93 89 25 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCAGTATCATGTTTTCGTTTTA</pcr_primer_p1>
		<pcr_primer_p2>ATAATGCCAAAAATGTGAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>337</pcr_amplicon_size>
		<canonical_amplicon>ACCAGTATCATGTTTTCGTTTTAAATGAAATTTCATGGTCGTCGGACTACGGTCATTTGTGACCCAGTGACAAAAGCGACACCGTACCCCAGCCAAGCCATGTGTTCGAAGATCGGTGAAGAATTCCCAGACCTGAAATTTTTCTGGGNNNNNNNNNNNATGAAATTTTGGAACTTCTGAACTTTTTGAGGTCTCTAAATTTTTTGAAATTTCAGAACTTTCAGGAATTTCGAAATTTATGAGTCTCCGAATTCTCGAATTTCCGAATTTCCAAAGTTTTGAATTTCTGAATTTCCTATAACTTCTGGAACATCCAAACTCACATTTTTGGCATTAT</canonical_amplicon>
		<polymorphic_amplicon>ACCAGTATCATGTTTTCGTTTTAAATGAAATTTCATGGTCGTCGGACTACGGTCATTTGTGACCCAGTGACAAAAGCGACACCGTACCCCAGCCAARCCATGTGTTCGAAGATCGGTGAAGAATTCCCAGACCTGAAATTTTTCTGGGNNNNNNNNNNNATGAAATTTTGGAACTTCTGAACTTTTTGAGGTCTCTAAATTTTTTGAAATTTCAGAACTTTCAGGAATTTCGAAATTTATGAGTCTCCGAATTCTCGAATTTCCGAATTTCCAAAGTTTTGAATTTCTGAATTTCCTATAACTTCTGGAACATCCAAACTCACATTTTTGGCATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38765</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>56058</contig_pos>
        <strand></strand>
        <context>ctagtcatgt[C/T]tgtactcatt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGACTTTTCGAAAAAAAATTTTTTGATCCAAATTTTTCCCTAGTCATGT</left_flank>
        <right_flank>TGTACTCATTTTGAAGCTCTTTTCCCGCCAAGTTCAAATTTTCTGATAAA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTGAAAATTCGTAATATTCAAAAACCCCGATTTCTTTTCTTCACGCTGGCAATTCTGGAAACACTGAAAAATCTAATATTCCTAAAATTTCAAAATTGCTGAAAATCTATAAATTCCGGAGACATGTTTCTAGAATTCTCGAAATTCTAAAATTCCAAAAACATTGGATTCTCAAAATTCCAGAAATTTGAAAAATTCAGAAAAAAGATTCTCGAAATCTAGGAATTTCAGATTTTTAGATCATGAAACTTTTAGAGTTCATGATAATTCAAAAATCGAAAATTAAAAATTACCTGTTTCTTCATCCGAGGCGCATAATTGGCTGGTGCTTGTGAATTGATCTTCTCCTCACAAATCGCCCATAACCCTCCGGGTCCTGAAATTGGATTCGAATGATTCATGAAAGCAAACTCAGCTCATCAAGAGCTTCAAAATGAGTATAAACAAGGTGACTTTTCGAAAAAAAATTTTTTGATCCAAATTTTTCCCTAGTCATGTCTGTACTCATTTTGAAGCTCTTTTCCCGCCAAGTTCAAATTTTCTGATAAAATTGACTTACCAGTATCATGTTTTCGTTTTAAATGAAATTTCATGGTCGTCGGACTACGGTCATTTGTGACCCAGTGACAAAAGCGACACCGTACCCCAGCCAAGCCATGTGTTCGAAGATCGGTGAAGAATTCCCAGACCTGAAATTTTTCTGGGTTACTGTAGGTTAATCCAGTGCATCAAGTTTTACGACAAAATGCACAGAATTTTCGCTCACCGGGTTGCTCTTTTTGCGTCCGGCGTTCCTTGGATTCGGGATGTTTGGAGCTGGCGCGAGACCGGTCCGCATGACAGTGTCCGGGATTACTGTAGTAGTTGTTGTCATCATGATTTATAAGAAGTATTGGAGCTAGAAAAAAGATGGAGAACTCAGGAATTTGCGGTGTGAGTTTGAACTGAAAAATAAATTGAGAAATTTGGGGGAAAAACGGAAAAGAAGTAGAAATTTAA</canonical>
            <polymorphic>GCTGAAAATTCGTAATATTCAAAAACCCCGATTTCTTTTCTTCACGCTGGCAATTCTGGAAACACTGAAAAATCTAATATTCCTAAAATTTCAAAATTGCTGAAAATCTATAAATTCCGGAGACATGTTTCTAGAATTCTCGAAATTCTAAAATTCCAAAAACATTGGATTCTCAAAATTCCAGAAATTTGAAAAATTCAGAAAAAAGATTCTCGAAATCTAGGAATTTCAGATTTTTAGATCATGAAACTTTTAGAGTTCATGATAATTCAAAAATCGAAAATTAAAAATTACCTGTTTCTTCATCCGAGGCGCATAATTGGCTGGTGCTTGTGAATTGATCTTCTCCTCACAAATCGCCCATAACCCTCCGGGTCCTGAAATTGGATTCGAATGATTCATGAAAGCAAACTCAGCTCATCAAGAGCTTCAAAATGAGTATAAACAAGGTGACTTTTCGAAAAAAAATTTTTTGATCCAAATTTTTCCCTAGTCATGTYTGTACTCATTTTGAAGCTCTTTTCCCGCCAAGTTCAAATTTTCTGATAAAATTGACTTACCAGTATCATGTTTTCGTTTTAAATGAAATTTCATGGTCGTCGGACTACGGTCATTTGTGACCCAGTGACAAAAGCGACACCGTACCCCAGCCAAGCCATGTGTTCGAAGATCGGTGAAGAATTCCCAGACCTGAAATTTTTCTGGGTTACTGTAGGTTAATCCAGTGCATCAAGTTTTACGACAAAATGCACAGAATTTTCGCTCACCGGGTTGCTCTTTTTGCGTCCGGCGTTCCTTGGATTCGGGATGTTTGGAGCTGGCGCGAGACCGGTCCGCATGACAGTGTCCGGGATTACTGTAGTAGTTGTTGTCATCATGATTTATAAGAAGTATTGGAGCTAGAAAAAAGATGGAGAACTCAGGAATTTGCGGTGTGAGTTTGAACTGAAAAATAAATTGAGAAATTTGGGGGAAAAACGGAAAAGAAGTAGAAATTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGTGAATTGATCTTCTCCTC</pcr_primer_p1>
		<pcr_primer_p2>AAACGAAAACATGATACTGGTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTGTGAATTGATCTTCTCCTCACAAATCGCCCATAACCCTCCGGGTCCTGAAATTGGATTCGAATGATTCATGAAAGCAAACTCAGCTCATCAAGAGCTTCAAAATGAGTATAAACAAGGTGACTTTTCGAAAAAAAATTTTTTGATCCAAATTTTTCCCTAGTCATGTCTGTACTCATTTTGAAGCTCTTTTCCCGCCAAGTTCAAATTTTCTGATAAAATTGACTTACCAGTATCATGTTTTCGTTT</canonical_amplicon>
		<polymorphic_amplicon>CTTGTGAATTGATCTTCTCCTCACAAATCGCCCATAACCCTCCGGGTCCTGAAATTGGATTCGAATGATTCATGAAAGCAAACTCAGCTCATCAAGAGCTTCAAAATGAGTATAAACAAGGTGACTTTTCGAAAAAAAATTTTTTGATCCAAATTTTTCCCTAGTCATGTYTGTACTCATTTTGAAGCTCTTTTCCCGCCAAGTTCAAATTTTCTGATAAAATTGACTTACCAGTATCATGTTTTCGTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38766</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>56192</contig_pos>
        <strand></strand>
        <context>AGTGACAAAA[G/C]CGACACCGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TGAAATTTCATGGTCGTCGGACTACGGTCATTTGTGACCCAGTGACAAAA</left_flank>
        <right_flank>CGACACCGTACCCCAGCCAAGCCATGTGTTCGAAGATCGGTGAAGAATTC</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCTCGAAATTCTAAAATTCCAAAAACATTGGATTCTCAAAATTCCAGAAATTTGAAAAATTCAGAAAAAAGATTCTCGAAATCTAGGAATTTCAGATTTTTAGATCATGAAACTTTTAGAGTTCATGATAATTCAAAAATCGAAAATTAAAAATTACCTGTTTCTTCATCCGAGGCGCATAATTGGCTGGTGCTTGTGAATTGATCTTCTCCTCACAAATCGCCCATAACCCTCCGGGTCCTGAAATTGGATTCGAATGATTCATGAAAGCAAACTCAGCTCATCAAGAGCTTCAAAATGAGTATAAACAAGGTGACTTTTCGAAAAAAAATTTTTTGATCCAAATTTTTCCCTAGTCATGTCTGTACTCATTTTGAAGCTCTTTTCCCGCCAAGTTCAAATTTTCTGATAAAATTGACTTACCAGTATCATGTTTTCGTTTTAAATGAAATTTCATGGTCGTCGGACTACGGTCATTTGTGACCCAGTGACAAAAGCGACACCGTACCCCAGCCAAGCCATGTGTTCGAAGATCGGTGAAGAATTCCCAGACCTGAAATTTTTCTGGGTTACTGTAGGTTAATCCAGTGCATCAAGTTTTACGACAAAATGCACAGAATTTTCGCTCACCGGGTTGCTCTTTTTGCGTCCGGCGTTCCTTGGATTCGGGATGTTTGGAGCTGGCGCGAGACCGGTCCGCATGACAGTGTCCGGGATTACTGTAGTAGTTGTTGTCATCATGATTTATAAGAAGTATTGGAGCTAGAAAAAAGATGGAGAACTCAGGAATTTGCGGTGTGAGTTTGAACTGAAAAATAAATTGAGAAATTTGGGGGAAAAACGGAAAAGAAGTAGAAATTTAACATGTTAAAAGTGTCAAACATTGTTATAATAGGAGAATGATGGATAAGAAAACAGGAAGAGACGCAGACAGTCTCGTTTCTCTGGGCGCTCTCTAACCTGATTTGGAAAAAAAGTCATACATGAAGGCATCCTG</canonical>
            <polymorphic>AATTCTCGAAATTCTAAAATTCCAAAAACATTGGATTCTCAAAATTCCAGAAATTTGAAAAATTCAGAAAAAAGATTCTCGAAATCTAGGAATTTCAGATTTTTAGATCATGAAACTTTTAGAGTTCATGATAATTCAAAAATCGAAAATTAAAAATTACCTGTTTCTTCATCCGAGGCGCATAATTGGCTGGTGCTTGTGAATTGATCTTCTCCTCACAAATCGCCCATAACCCTCCGGGTCCTGAAATTGGATTCGAATGATTCATGAAAGCAAACTCAGCTCATCAAGAGCTTCAAAATGAGTATAAACAAGGTGACTTTTCGAAAAAAAATTTTTTGATCCAAATTTTTCCCTAGTCATGTCTGTACTCATTTTGAAGCTCTTTTCCCGCCAAGTTCAAATTTTCTGATAAAATTGACTTACCAGTATCATGTTTTCGTTTTAAATGAAATTTCATGGTCGTCGGACTACGGTCATTTGTGACCCAGTGACAAAASCGACACCGTACCCCAGCCAAGCCATGTGTTCGAAGATCGGTGAAGAATTCCCAGACCTGAAATTTTTCTGGGTTACTGTAGGTTAATCCAGTGCATCAAGTTTTACGACAAAATGCACAGAATTTTCGCTCACCGGGTTGCTCTTTTTGCGTCCGGCGTTCCTTGGATTCGGGATGTTTGGAGCTGGCGCGAGACCGGTCCGCATGACAGTGTCCGGGATTACTGTAGTAGTTGTTGTCATCATGATTTATAAGAAGTATTGGAGCTAGAAAAAAGATGGAGAACTCAGGAATTTGCGGTGTGAGTTTGAACTGAAAAATAAATTGAGAAATTTGGGGGAAAAACGGAAAAGAAGTAGAAATTTAACATGTTAAAAGTGTCAAACATTGTTATAATAGGAGAATGATGGATAAGAAAACAGGAAGAGACGCAGACAGTCTCGTTTCTCTGGGCGCTCTCTAACCTGATTTGGAAAAAAAGTCATACATGAAGGCATCCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACCAGTATCATGTTTTCGTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTCTGTGCATTTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>204</pcr_amplicon_size>
		<canonical_amplicon>TACCAGTATCATGTTTTCGTTTTAAATGAAATTTCATGGTCGTCGGACTACGGTCATTTGTGACCCAGTGACAAAAGCGACACCGTACCCCAGCCAAGCCATGTGTTCGAAGATCGGTGAAGAATTCCCAGACCTGAAATTTTTCTGGGTTACTGTAGGTTAATCCAGTGCATCAAGTTTTACGACAAAATGCACAGAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>TACCAGTATCATGTTTTCGTTTTAAATGAAATTTCATGGTCGTCGGACTACGGTCATTTGTGACCCAGTGACAAAASCGACACCGTACCCCAGCCAAGCCATGTGTTCGAAGATCGGTGAAGAATTCCCAGACCTGAAATTTTTCTGGGTTACTGTAGGTTAATCCAGTGCATCAAGTTTTACGACAAAATGCACAGAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38767</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>56213</contig_pos>
        <strand></strand>
        <context>CCCCAGCCAA[G/A]CCATGTGTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTACGGTCATTTGTGACCCAGTGACAAAAGCGACACCGTACCCCAGCCAA</left_flank>
        <right_flank>CCATGTGTTCGAAGATCGGTGAAGAATTCCCAGACCTGAAATTTTTCTGG</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAAAACATTGGATTCTCAAAATTCCAGAAATTTGAAAAATTCAGAAAAAAGATTCTCGAAATCTAGGAATTTCAGATTTTTAGATCATGAAACTTTTAGAGTTCATGATAATTCAAAAATCGAAAATTAAAAATTACCTGTTTCTTCATCCGAGGCGCATAATTGGCTGGTGCTTGTGAATTGATCTTCTCCTCACAAATCGCCCATAACCCTCCGGGTCCTGAAATTGGATTCGAATGATTCATGAAAGCAAACTCAGCTCATCAAGAGCTTCAAAATGAGTATAAACAAGGTGACTTTTCGAAAAAAAATTTTTTGATCCAAATTTTTCCCTAGTCATGTCTGTACTCATTTTGAAGCTCTTTTCCCGCCAAGTTCAAATTTTCTGATAAAATTGACTTACCAGTATCATGTTTTCGTTTTAAATGAAATTTCATGGTCGTCGGACTACGGTCATTTGTGACCCAGTGACAAAAGCGACACCGTACCCCAGCCAAGCCATGTGTTCGAAGATCGGTGAAGAATTCCCAGACCTGAAATTTTTCTGGGTTACTGTAGGTTAATCCAGTGCATCAAGTTTTACGACAAAATGCACAGAATTTTCGCTCACCGGGTTGCTCTTTTTGCGTCCGGCGTTCCTTGGATTCGGGATGTTTGGAGCTGGCGCGAGACCGGTCCGCATGACAGTGTCCGGGATTACTGTAGTAGTTGTTGTCATCATGATTTATAAGAAGTATTGGAGCTAGAAAAAAGATGGAGAACTCAGGAATTTGCGGTGTGAGTTTGAACTGAAAAATAAATTGAGAAATTTGGGGGAAAAACGGAAAAGAAGTAGAAATTTAACATGTTAAAAGTGTCAAACATTGTTATAATAGGAGAATGATGGATAAGAAAACAGGAAGAGACGCAGACAGTCTCGTTTCTCTGGGCGCTCTCTAACCTGATTTGGAAAAAAAGTCATACATGAAGGCATCCTGGCTTCCATGCGCTTTCCCAAA</canonical>
            <polymorphic>CCAAAAACATTGGATTCTCAAAATTCCAGAAATTTGAAAAATTCAGAAAAAAGATTCTCGAAATCTAGGAATTTCAGATTTTTAGATCATGAAACTTTTAGAGTTCATGATAATTCAAAAATCGAAAATTAAAAATTACCTGTTTCTTCATCCGAGGCGCATAATTGGCTGGTGCTTGTGAATTGATCTTCTCCTCACAAATCGCCCATAACCCTCCGGGTCCTGAAATTGGATTCGAATGATTCATGAAAGCAAACTCAGCTCATCAAGAGCTTCAAAATGAGTATAAACAAGGTGACTTTTCGAAAAAAAATTTTTTGATCCAAATTTTTCCCTAGTCATGTCTGTACTCATTTTGAAGCTCTTTTCCCGCCAAGTTCAAATTTTCTGATAAAATTGACTTACCAGTATCATGTTTTCGTTTTAAATGAAATTTCATGGTCGTCGGACTACGGTCATTTGTGACCCAGTGACAAAAGCGACACCGTACCCCAGCCAARCCATGTGTTCGAAGATCGGTGAAGAATTCCCAGACCTGAAATTTTTCTGGGTTACTGTAGGTTAATCCAGTGCATCAAGTTTTACGACAAAATGCACAGAATTTTCGCTCACCGGGTTGCTCTTTTTGCGTCCGGCGTTCCTTGGATTCGGGATGTTTGGAGCTGGCGCGAGACCGGTCCGCATGACAGTGTCCGGGATTACTGTAGTAGTTGTTGTCATCATGATTTATAAGAAGTATTGGAGCTAGAAAAAAGATGGAGAACTCAGGAATTTGCGGTGTGAGTTTGAACTGAAAAATAAATTGAGAAATTTGGGGGAAAAACGGAAAAGAAGTAGAAATTTAACATGTTAAAAGTGTCAAACATTGTTATAATAGGAGAATGATGGATAAGAAAACAGGAAGAGACGCAGACAGTCTCGTTTCTCTGGGCGCTCTCTAACCTGATTTGGAAAAAAAGTCATACATGAAGGCATCCTGGCTTCCATGCGCTTTCCCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>236 168 162 134 93 89 82 20 11 5</canonical_bands>
                <polymorphic_bands>236 168 167 134 93 89 82 20 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACCAGTATCATGTTTTCGTTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAAATTCTGTGCATTTTGTC</pcr_primer_p2>
		<pcr_amplicon_size>204</pcr_amplicon_size>
		<canonical_amplicon>TACCAGTATCATGTTTTCGTTTTAAATGAAATTTCATGGTCGTCGGACTACGGTCATTTGTGACCCAGTGACAAAAGCGACACCGTACCCCAGCCAAGCCATGTGTTCGAAGATCGGTGAAGAATTCCCAGACCTGAAATTTTTCTGGGTTACTGTAGGTTAATCCAGTGCATCAAGTTTTACGACAAAATGCACAGAATTTTC</canonical_amplicon>
		<polymorphic_amplicon>TACCAGTATCATGTTTTCGTTTTAAATGAAATTTCATGGTCGTCGGACTACGGTCATTTGTGACCCAGTGACAAAAGCGACACCGTACCCCAGCCAARCCATGTGTTCGAAGATCGGTGAAGAATTCCCAGACCTGAAATTTTTCTGGGTTACTGTAGGTTAATCCAGTGCATCAAGTTTTACGACAAAATGCACAGAATTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38768</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>56290</contig_pos>
        <strand>+</strand>
        <context>CCAGTGCATC[A/G]AGTTTTACGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCCAGACCTGAAATTTTTCTGGGTTACTGTAGGTTAATCCAGTGCATC</left_flank>
        <right_flank>AGTTTTACGACAAAATGCACAGAATTTTCGCTCACCGGGTTGCTCTTTTT</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTAGATCATGAAACTTTTAGAGTTCATGATAATTCAAAAATCGAAAATTAAAAATTACCTGTTTCTTCATCCGAGGCGCATAATTGGCTGGTGCTTGTGAATTGATCTTCTCCTCACAAATCGCCCATAACCCTCCGGGTCCTGAAATTGGATTCGAATGATTCATGAAAGCAAACTCAGCTCATCAAGAGCTTCAAAATGAGTATAAACAAGGTGACTTTTCGAAAAAAAATTTTTTGATCCAAATTTTTCCCTAGTCATGTCTGTACTCATTTTGAAGCTCTTTTCCCGCCAAGTTCAAATTTTCTGATAAAATTGACTTACCAGTATCATGTTTTCGTTTTAAATGAAATTTCATGGTCGTCGGACTACGGTCATTTGTGACCCAGTGACAAAAGCGACACCGTACCCCAGCCAAGCCATGTGTTCGAAGATCGGTGAAGAATTCCCAGACCTGAAATTTTTCTGGGTTACTGTAGGTTAATCCAGTGCATCAAGTTTTACGACAAAATGCACAGAATTTTCGCTCACCGGGTTGCTCTTTTTGCGTCCGGCGTTCCTTGGATTCGGGATGTTTGGAGCTGGCGCGAGACCGGTCCGCATGACAGTGTCCGGGATTACTGTAGTAGTTGTTGTCATCATGATTTATAAGAAGTATTGGAGCTAGAAAAAAGATGGAGAACTCAGGAATTTGCGGTGTGAGTTTGAACTGAAAAATAAATTGAGAAATTTGGGGGAAAAACGGAAAAGAAGTAGAAATTTAACATGTTAAAAGTGTCAAACATTGTTATAATAGGAGAATGATGGATAAGAAAACAGGAAGAGACGCAGACAGTCTCGTTTCTCTGGGCGCTCTCTAACCTGATTTGGAAAAAAAGTCATACATGAAGGCATCCTGGCTTCCATGCGCTTTCCCAAAAAACCGTCATATCTCAAGAAGCATCGAAGCTAGAAGATTGTGATCAACTACAAAAATAATTCGCATAAAATTTTACA</canonical>
            <polymorphic>ATTTTTAGATCATGAAACTTTTAGAGTTCATGATAATTCAAAAATCGAAAATTAAAAATTACCTGTTTCTTCATCCGAGGCGCATAATTGGCTGGTGCTTGTGAATTGATCTTCTCCTCACAAATCGCCCATAACCCTCCGGGTCCTGAAATTGGATTCGAATGATTCATGAAAGCAAACTCAGCTCATCAAGAGCTTCAAAATGAGTATAAACAAGGTGACTTTTCGAAAAAAAATTTTTTGATCCAAATTTTTCCCTAGTCATGTCTGTACTCATTTTGAAGCTCTTTTCCCGCCAAGTTCAAATTTTCTGATAAAATTGACTTACCAGTATCATGTTTTCGTTTTAAATGAAATTTCATGGTCGTCGGACTACGGTCATTTGTGACCCAGTGACAAAAGCGACACCGTACCCCAGCCAAGCCATGTGTTCGAAGATCGGTGAAGAATTCCCAGACCTGAAATTTTTCTGGGTTACTGTAGGTTAATCCAGTGCATCRAGTTTTACGACAAAATGCACAGAATTTTCGCTCACCGGGTTGCTCTTTTTGCGTCCGGCGTTCCTTGGATTCGGGATGTTTGGAGCTGGCGCGAGACCGGTCCGCATGACAGTGTCCGGGATTACTGTAGTAGTTGTTGTCATCATGATTTATAAGAAGTATTGGAGCTAGAAAAAAGATGGAGAACTCAGGAATTTGCGGTGTGAGTTTGAACTGAAAAATAAATTGAGAAATTTGGGGGAAAAACGGAAAAGAAGTAGAAATTTAACATGTTAAAAGTGTCAAACATTGTTATAATAGGAGAATGATGGATAAGAAAACAGGAAGAGACGCAGACAGTCTCGTTTCTCTGGGCGCTCTCTAACCTGATTTGGAAAAAAAGTCATACATGAAGGCATCCTGGCTTCCATGCGCTTTCCCAAAAAACCGTCATATCTCAAGAAGCATCGAAGCTAGAAGATTGTGATCAACTACAAAAATAATTCGCATAAAATTTTACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAATTCCCAGACCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCCTGAGTTCTCCATCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAATTCCCAGACCTGAAATTTTTCTGGGTTACTGTAGGTTAATCCAGTGCATCAAGTTTTACGACAAAATGCACAGAATTTTCGCTCACCGGGTTGCTCTTTTTGCGTCCGGCGTTCCTTGGATTCGGGATGTTTGGAGCTGGCGCGAGACCGGTCCGCATGACAGTGTCCGGGATTACTGTAGTAGTTGTTGTCATCATGATTTATAAGAAGTATTGGAGCTAGAAAAAAGATGGAGAACTCAGGAA</canonical_amplicon>
		<polymorphic_amplicon>AAGAATTCCCAGACCTGAAATTTTTCTGGGTTACTGTAGGTTAATCCAGTGCATCRAGTTTTACGACAAAATGCACAGAATTTTCGCTCACCGGGTTGCTCTTTTTGCGTCCGGCGTTCCTTGGATTCGGGATGTTTGGAGCTGGCGCGAGACCGGTCCGCATGACAGTGTCCGGGATTACTGTAGTAGTTGTTGTCATCATGATTTATAAGAAGTATTGGAGCTAGAAAAAAGATGGAGAACTCAGGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38769</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>56453</contig_pos>
        <strand>+</strand>
        <context>TAAGAAGTAT[C/T]GGAGCTAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGTCCGGGATTACTGTAGTAGTTGTTGTCATCATGATTTATAAGAAGTAT</left_flank>
        <right_flank>GGAGCTAGAAAAAAGATGGAGAACTCAGGAATTTGCGGTGTGAGTTTGAA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTCATGAAAGCAAACTCAGCTCATCAAGAGCTTCAAAATGAGTATAAACAAGGTGACTTTTCGAAAAAAAATTTTTTGATCCAAATTTTTCCCTAGTCATGTCTGTACTCATTTTGAAGCTCTTTTCCCGCCAAGTTCAAATTTTCTGATAAAATTGACTTACCAGTATCATGTTTTCGTTTTAAATGAAATTTCATGGTCGTCGGACTACGGTCATTTGTGACCCAGTGACAAAAGCGACACCGTACCCCAGCCAAGCCATGTGTTCGAAGATCGGTGAAGAATTCCCAGACCTGAAATTTTTCTGGGTTACTGTAGGTTAATCCAGTGCATCAAGTTTTACGACAAAATGCACAGAATTTTCGCTCACCGGGTTGCTCTTTTTGCGTCCGGCGTTCCTTGGATTCGGGATGTTTGGAGCTGGCGCGAGACCGGTCCGCATGACAGTGTCCGGGATTACTGTAGTAGTTGTTGTCATCATGATTTATAAGAAGTATTGGAGCTAGAAAAAAGATGGAGAACTCAGGAATTTGCGGTGTGAGTTTGAACTGAAAAATAAATTGAGAAATTTGGGGGAAAAACGGAAAAGAAGTAGAAATTTAACATGTTAAAAGTGTCAAACATTGTTATAATAGGAGAATGATGGATAAGAAAACAGGAAGAGACGCAGACAGTCTCGTTTCTCTGGGCGCTCTCTAACCTGATTTGGAAAAAAAGTCATACATGAAGGCATCCTGGCTTCCATGCGCTTTCCCAAAAAACCGTCATATCTCAAGAAGCATCGAAGCTAGAAGATTGTGATCAACTACAAAAATAATTCGCATAAAATTTTACACATTTTTGTAGTTGACAACTTTTTGATAGCTTTTATGGTCCTTGAGATAGAACTTTTGAAAGTTTGGGGCTCCCTCAGAGAGGGGGAGACGCAGAGAAACGAGACACTCTTGCTCCTCTGTGTCTCGTCTTTAAATAGCTATAACTTAAAAATTATGCTAGAT</canonical>
            <polymorphic>GATTCATGAAAGCAAACTCAGCTCATCAAGAGCTTCAAAATGAGTATAAACAAGGTGACTTTTCGAAAAAAAATTTTTTGATCCAAATTTTTCCCTAGTCATGTCTGTACTCATTTTGAAGCTCTTTTCCCGCCAAGTTCAAATTTTCTGATAAAATTGACTTACCAGTATCATGTTTTCGTTTTAAATGAAATTTCATGGTCGTCGGACTACGGTCATTTGTGACCCAGTGACAAAAGCGACACCGTACCCCAGCCAAGCCATGTGTTCGAAGATCGGTGAAGAATTCCCAGACCTGAAATTTTTCTGGGTTACTGTAGGTTAATCCAGTGCATCAAGTTTTACGACAAAATGCACAGAATTTTCGCTCACCGGGTTGCTCTTTTTGCGTCCGGCGTTCCTTGGATTCGGGATGTTTGGAGCTGGCGCGAGACCGGTCCGCATGACAGTGTCCGGGATTACTGTAGTAGTTGTTGTCATCATGATTTATAAGAAGTATYGGAGCTAGAAAAAAGATGGAGAACTCAGGAATTTGCGGTGTGAGTTTGAACTGAAAAATAAATTGAGAAATTTGGGGGAAAAACGGAAAAGAAGTAGAAATTTAACATGTTAAAAGTGTCAAACATTGTTATAATAGGAGAATGATGGATAAGAAAACAGGAAGAGACGCAGACAGTCTCGTTTCTCTGGGCGCTCTCTAACCTGATTTGGAAAAAAAGTCATACATGAAGGCATCCTGGCTTCCATGCGCTTTCCCAAAAAACCGTCATATCTCAAGAAGCATCGAAGCTAGAAGATTGTGATCAACTACAAAAATAATTCGCATAAAATTTTACACATTTTTGTAGTTGACAACTTTTTGATAGCTTTTATGGTCCTTGAGATAGAACTTTTGAAAGTTTGGGGCTCCCTCAGAGAGGGGGAGACGCAGAGAAACGAGACACTCTTGCTCCTCTGTGTCTCGTCTTTAAATAGCTATAACTTAAAAATTATGCTAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGTTACTGTAGGTTAATCCAGT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAGTTCAAACTCACACC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGGTTACTGTAGGTTAATCCAGTGCATCAAGTTTTACGACAAAATGCACAGAATTTTCGCTCACCGGGTTGCTCTTTTTGCGTCCGGCGTTCCTTGGATTCGGGATGTTTGGAGCTGGCGCGAGACCGGTCCGCATGACAGTGTCCGGGATTACTGTAGTAGTTGTTGTCATCATGATTTATAAGAAGTATTGGAGCTAGAAAAAAGATGGAGAACTCAGGAATTTGCGGTGTGAGTTTGAACTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGGTTACTGTAGGTTAATCCAGTGCATCAAGTTTTACGACAAAATGCACAGAATTTTCGCTCACCGGGTTGCTCTTTTTGCGTCCGGCGTTCCTTGGATTCGGGATGTTTGGAGCTGGCGCGAGACCGGTCCGCATGACAGTGTCCGGGATTACTGTAGTAGTTGTTGTCATCATGATTTATAAGAAGTATYGGAGCTAGAAAAAAGATGGAGAACTCAGGAATTTGCGGTGTGAGTTTGAACTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38770</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>56585</contig_pos>
        <strand>+</strand>
        <context>AACATTGTTA[G/T]AATAGGAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACGGAAAAGAAGTAGAAATTTAACATGTTAAAAGTGTCAAACATTGTTA</left_flank>
        <right_flank>AATAGGAGAATGATGGATAAGAAAACAGGAAGAGACGCAGACAGTCTCGT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAGTTCAAATTTTCTGATAAAATTGACTTACCAGTATCATGTTTTCGTTTTAAATGAAATTTCATGGTCGTCGGACTACGGTCATTTGTGACCCAGTGACAAAAGCGACACCGTACCCCAGCCAAGCCATGTGTTCGAAGATCGGTGAAGAATTCCCAGACCTGAAATTTTTCTGGGTTACTGTAGGTTAATCCAGTGCATCAAGTTTTACGACAAAATGCACAGAATTTTCGCTCACCGGGTTGCTCTTTTTGCGTCCGGCGTTCCTTGGATTCGGGATGTTTGGAGCTGGCGCGAGACCGGTCCGCATGACAGTGTCCGGGATTACTGTAGTAGTTGTTGTCATCATGATTTATAAGAAGTATTGGAGCTAGAAAAAAGATGGAGAACTCAGGAATTTGCGGTGTGAGTTTGAACTGAAAAATAAATTGAGAAATTTGGGGGAAAAACGGAAAAGAAGTAGAAATTTAACATGTTAAAAGTGTCAAACATTGTTATAATAGGAGAATGATGGATAAGAAAACAGGAAGAGACGCAGACAGTCTCGTTTCTCTGGGCGCTCTCTAACCTGATTTGGAAAAAAAGTCATACATGAAGGCATCCTGGCTTCCATGCGCTTTCCCAAAAAACCGTCATATCTCAAGAAGCATCGAAGCTAGAAGATTGTGATCAACTACAAAAATAATTCGCATAAAATTTTACACATTTTTGTAGTTGACAACTTTTTGATAGCTTTTATGGTCCTTGAGATAGAACTTTTGAAAGTTTGGGGCTCCCTCAGAGAGGGGGAGACGCAGAGAAACGAGACACTCTTGCTCCTCTGTGTCTCGTCTTTAAATAGCTATAACTTAAAAATTATGCTAGATATATGAAAAATTGAAAGTTAAAAAATGTGTCTTTTACATAAATATAGAAATTCGAATTTTGAAAATTTTGGAAAAAAAATTTTTTTTCAGATTTTTTTTTTCGAAAACTTTTTTTCTGACAGTTTGACCTAA</canonical>
            <polymorphic>CCAAGTTCAAATTTTCTGATAAAATTGACTTACCAGTATCATGTTTTCGTTTTAAATGAAATTTCATGGTCGTCGGACTACGGTCATTTGTGACCCAGTGACAAAAGCGACACCGTACCCCAGCCAAGCCATGTGTTCGAAGATCGGTGAAGAATTCCCAGACCTGAAATTTTTCTGGGTTACTGTAGGTTAATCCAGTGCATCAAGTTTTACGACAAAATGCACAGAATTTTCGCTCACCGGGTTGCTCTTTTTGCGTCCGGCGTTCCTTGGATTCGGGATGTTTGGAGCTGGCGCGAGACCGGTCCGCATGACAGTGTCCGGGATTACTGTAGTAGTTGTTGTCATCATGATTTATAAGAAGTATTGGAGCTAGAAAAAAGATGGAGAACTCAGGAATTTGCGGTGTGAGTTTGAACTGAAAAATAAATTGAGAAATTTGGGGGAAAAACGGAAAAGAAGTAGAAATTTAACATGTTAAAAGTGTCAAACATTGTTAKAATAGGAGAATGATGGATAAGAAAACAGGAAGAGACGCAGACAGTCTCGTTTCTCTGGGCGCTCTCTAACCTGATTTGGAAAAAAAGTCATACATGAAGGCATCCTGGCTTCCATGCGCTTTCCCAAAAAACCGTCATATCTCAAGAAGCATCGAAGCTAGAAGATTGTGATCAACTACAAAAATAATTCGCATAAAATTTTACACATTTTTGTAGTTGACAACTTTTTGATAGCTTTTATGGTCCTTGAGATAGAACTTTTGAAAGTTTGGGGCTCCCTCAGAGAGGGGGAGACGCAGAGAAACGAGACACTCTTGCTCCTCTGTGTCTCGTCTTTAAATAGCTATAACTTAAAAATTATGCTAGATATATGAAAAATTGAAAGTTAAAAAATGTGTCTTTTACATAAATATAGAAATTCGAATTTTGAAAATTTTGGAAAAAAAATTTTTTTTCAGATTTTTTTTTTCGAAAACTTTTTTTCTGACAGTTTGACCTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTATAA</site>
                <isoschizomers>
                    <enzyme>PsiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 357 142</canonical_bands>
                <polymorphic_bands>643 357</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGATGGAGAACTCAGGAATTT</pcr_primer_p1>
		<pcr_primer_p2>ATGCCTTCATGTATGACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>AAGATGGAGAACTCAGGAATTTGCGGTGTGAGTTTGAACTGAAAAATAAATTGAGAAATTTGGGGGAAAAACGGAAAAGAAGTAGAAATTTAACATGTTAAAAGTGTCAAACATTGTTATAATAGGAGAATGATGGATAAGAAAACAGGAAGAGACGCAGACAGTCTCGTTTCTCTGGGCGCTCTCTAACCTGATTTGGAAAAAAAGTCATACATGAAGGCAT</canonical_amplicon>
		<polymorphic_amplicon>AAGATGGAGAACTCAGGAATTTGCGGTGTGAGTTTGAACTGAAAAATAAATTGAGAAATTTGGGGGAAAAACGGAAAAGAAGTAGAAATTTAACATGTTAAAAGTGTCAAACATTGTTAKAATAGGAGAATGATGGATAAGAAAACAGGAAGAGACGCAGACAGTCTCGTTTCTCTGGGCGCTCTCTAACCTGATTTGGAAAAAAAGTCATACATGAAGGCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38771</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>65897</contig_pos>
        <strand></strand>
        <context>ggtcagctac[G/A]aaaytgctca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TACCGCTGTATCTCCAGAAGCGTTAAAGCTATCAAATTTTGGTCAGCTAC</left_flank>
        <right_flank>AAATTGCTCAGCATACAATTTTACGCATTTTTGTAGTTTATAACTTTTTC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCCCCATTTTACTTTTCCATGGATTCAAACAGTATGAAAGACAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAATAAATATAAATTTCGCCCCGAATTTTAATTGTACCTAATGTGATGGATGACTTGTAGCGAGGAGCGACGGTGATGAATTGAATTCGGATATATATTGGATTTGTTGAATACCTTTTTTTTTTGAAAAGAAAAAGAGAAAGAGGGGAATTTCAAAACATTGTTTTGAGCTTTTTTTTGAGTATGGAGCTCTAAGACGCTCATATCTCAAGAATCAGTTGCGCTAGCATAATTTTGTCAACTACAAAATTACTCAGCATAAAATTTTACACATTTTAGTAGTTAACAACTTTTTCTTAGCTATTACGGGTCTTGAGATACAAGCTTTGGAAGAGACGCAGACATTGCGCTTTCCCGAAATACCGCTGTATCTCCAGAAGCGTTAAAGCTATCAAATTTTGGTCAGCTACGAAATTGCTCAGCATACAATTTTACGCATTTTTGTAGTTTATAACTTTTTCCTATCTCCAACGGTTCTCGAGATACGCTTCTATCAAGTTAGCCGAGCTAAAGAGAGACGCAGAGAAGCGATACACTCTTGTTTCTCTGCGTCTCGCTGGCTATTTGGCTCGGAAAGACTTTTTCTCTAATAGCCTCTAATAGCTAGAAAAACAGAAAAACAAGATTCGAATTGAGTCTGAGCACAGTTTTTTTTTTGAAAAAAAAACATTAAATAGCAATTTTTAAAATTAAAAAAAATAAAAAATTCTCCTCATATCTCATGAACCGTTATAGCTATGAAAAAGTTGCTGACTACAAAAATGTGTAAAATTTTAAGCTGAGCAAGTTTGTAGTTGATCACTTTTATCTAGCTTTGATGCTTCTCGAGATATTACGGTATTTCAAAAGGGTGCAGTGGCGCATTGTCTGCGTCTCTTCCGGTGCATGTATCTCGCGAACCGTAGTAGCTA</canonical>
            <polymorphic>GTCCCCCATTTTACTTTTCCATGGATTCAAACAGTATGAAAGACAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAATAAATATAAATTTCGCCCCGAATTTTAATTGTACCTAATGTGATGGATGACTTGTAGCGAGGAGCGACGGTGATGAATTGAATTCGGATATATATTGGATTTGTTGAATACCTTTTTTTTTTGAAAAGAAAAAGAGAAAGAGGGGAATTTCAAAACATTGTTTTGAGCTTTTTTTTGAGTATGGAGCTCTAAGACGCTCATATCTCAAGAATCAGTTGCGCTAGCATAATTTTGTCAACTACAAAATTACTCAGCATAAAATTTTACACATTTTAGTAGTTAACAACTTTTTCTTAGCTATTACGGGTCTTGAGATACAAGCTTTGGAAGAGACGCAGACATTGCGCTTTCCCGAAATACCGCTGTATCTCCAGAAGCGTTAAAGCTATCAAATTTTGGTCAGCTACRAAATTGCTCAGCATACAATTTTACGCATTTTTGTAGTTTATAACTTTTTCCTATCTCCAACGGTTCTCGAGATACGCTTCTATCAAGTTAGCCGAGCTAAAGAGAGACGCAGAGAAGCGATACACTCTTGTTTCTCTGCGTCTCGCTGGCTATTTGGCTCGGAAAGACTTTTTCTCTAATAGCCTCTAATAGCTAGAAAAACAGAAAAACAAGATTCGAATTGAGTCTGAGCACAGTTTTTTTTTTGAAAAAAAAACATTAAATAGCAATTTTTAAAATTAAAAAAAATAAAAAATTCTCCTCATATCTCATGAACCGTTATAGCTATGAAAAAGTTGCTGACTACAAAAATGTGTAAAATTTTAAGCTGAGCAAGTTTGTAGTTGATCACTTTTATCTAGCTTTGATGCTTCTCGAGATATTACGGTATTTCAAAAGGGTGCAGTGGCGCATTGTCTGCGTCTCTTCCGGTGCATGTATCTCGCGAACCGTAGTAGCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGGGAATTTCAAAACATT</pcr_primer_p1>
		<pcr_primer_p2>ATTAGAGGCTATTAGAGAAAAAGTCT</pcr_primer_p2>
		<pcr_amplicon_size>459</pcr_amplicon_size>
		<canonical_amplicon>GAGGGGAATTTCAAAACATTGTTTTGAGCTTTTTTTTGAGTATGGAGCTCTAAGACGCTCATATCTCAAGAATCAGTTGCGCTAGCATAATTTTGTCAACTACAAAATTACTCAGCATAAAATTTTACACATTTTAGTAGTTAACAACTTTTTCTTAGCTATTACGGGTCTTGAGATACAAGCTTTGGAAGAGACGCAGACATTGCGCTTTCCCGAAATACCGCTGTATCTCCAGAAGCGTTAAAGCTATCAAATTTTGGTCAGCTACGAAATTGCTCAGCATACAATTTTACGCATTTTTGTAGTTTATAACTTTTTCCTATCTCCAACGGTTCTCGAGATACGCTTCTATCAAGTTAGCCGAGCTAAAGAGAGACGCAGAGAAGCGATACACTCTTGTTTCTCTGCGTCTCGCTGGCTATTTGGCTCGGAAAGACTTTTTCTCTAATAGCCTCTAAT</canonical_amplicon>
		<polymorphic_amplicon>GAGGGGAATTTCAAAACATTGTTTTGAGCTTTTTTTTGAGTATGGAGCTCTAAGACGCTCATATCTCAAGAATCAGTTGCGCTAGCATAATTTTGTCAACTACAAAATTACTCAGCATAAAATTTTACACATTTTAGTAGTTAACAACTTTTTCTTAGCTATTACGGGTCTTGAGATACAAGCTTTGGAAGAGACGCAGACATTGCGCTTTCCCGAAATACCGCTGTATCTCCAGAAGCGTTAAAGCTATCAAATTTTGGTCAGCTACRAAATTGCTCAGCATACAATTTTACGCATTTTTGTAGTTTATAACTTTTTCCTATCTCCAACGGTTCTCGAGATACGCTTCTATCAAGTTAGCCGAGCTAAAGAGAGACGCAGAGAAGCGATACACTCTTGTTTCTCTGCGTCTCGCTGGCTATTTGGCTCGGAAAGACTTTTTCTCTAATAGCCTCTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38772</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>65901</contig_pos>
        <strand></strand>
        <context>agctacraaa[T/C]tgctcagcat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCTGTATCTCCAGAAGCGTTAAAGCTATCAAATTTTGGTCAGCTACGAAA</left_flank>
        <right_flank>TGCTCAGCATACAATTTTACGCATTTTTGTAGTTTATAACTTTTTCCTAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCATTTTACTTTTCCATGGATTCAAACAGTATGAAAGACAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAATAAATATAAATTTCGCCCCGAATTTTAATTGTACCTAATGTGATGGATGACTTGTAGCGAGGAGCGACGGTGATGAATTGAATTCGGATATATATTGGATTTGTTGAATACCTTTTTTTTTTGAAAAGAAAAAGAGAAAGAGGGGAATTTCAAAACATTGTTTTGAGCTTTTTTTTGAGTATGGAGCTCTAAGACGCTCATATCTCAAGAATCAGTTGCGCTAGCATAATTTTGTCAACTACAAAATTACTCAGCATAAAATTTTACACATTTTAGTAGTTAACAACTTTTTCTTAGCTATTACGGGTCTTGAGATACAAGCTTTGGAAGAGACGCAGACATTGCGCTTTCCCGAAATACCGCTGTATCTCCAGAAGCGTTAAAGCTATCAAATTTTGGTCAGCTACGAAATTGCTCAGCATACAATTTTACGCATTTTTGTAGTTTATAACTTTTTCCTATCTCCAACGGTTCTCGAGATACGCTTCTATCAAGTTAGCCGAGCTAAAGAGAGACGCAGAGAAGCGATACACTCTTGTTTCTCTGCGTCTCGCTGGCTATTTGGCTCGGAAAGACTTTTTCTCTAATAGCCTCTAATAGCTAGAAAAACAGAAAAACAAGATTCGAATTGAGTCTGAGCACAGTTTTTTTTTTGAAAAAAAAACATTAAATAGCAATTTTTAAAATTAAAAAAAATAAAAAATTCTCCTCATATCTCATGAACCGTTATAGCTATGAAAAAGTTGCTGACTACAAAAATGTGTAAAATTTTAAGCTGAGCAAGTTTGTAGTTGATCACTTTTATCTAGCTTTGATGCTTCTCGAGATATTACGGTATTTCAAAAGGGTGCAGTGGCGCATTGTCTGCGTCTCTTCCGGTGCATGTATCTCGCGAACCGTAGTAGCTATGAA</canonical>
            <polymorphic>CCCATTTTACTTTTCCATGGATTCAAACAGTATGAAAGACAAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAATAAATATAAATTTCGCCCCGAATTTTAATTGTACCTAATGTGATGGATGACTTGTAGCGAGGAGCGACGGTGATGAATTGAATTCGGATATATATTGGATTTGTTGAATACCTTTTTTTTTTGAAAAGAAAAAGAGAAAGAGGGGAATTTCAAAACATTGTTTTGAGCTTTTTTTTGAGTATGGAGCTCTAAGACGCTCATATCTCAAGAATCAGTTGCGCTAGCATAATTTTGTCAACTACAAAATTACTCAGCATAAAATTTTACACATTTTAGTAGTTAACAACTTTTTCTTAGCTATTACGGGTCTTGAGATACAAGCTTTGGAAGAGACGCAGACATTGCGCTTTCCCGAAATACCGCTGTATCTCCAGAAGCGTTAAAGCTATCAAATTTTGGTCAGCTACGAAAYTGCTCAGCATACAATTTTACGCATTTTTGTAGTTTATAACTTTTTCCTATCTCCAACGGTTCTCGAGATACGCTTCTATCAAGTTAGCCGAGCTAAAGAGAGACGCAGAGAAGCGATACACTCTTGTTTCTCTGCGTCTCGCTGGCTATTTGGCTCGGAAAGACTTTTTCTCTAATAGCCTCTAATAGCTAGAAAAACAGAAAAACAAGATTCGAATTGAGTCTGAGCACAGTTTTTTTTTTGAAAAAAAAACATTAAATAGCAATTTTTAAAATTAAAAAAAATAAAAAATTCTCCTCATATCTCATGAACCGTTATAGCTATGAAAAAGTTGCTGACTACAAAAATGTGTAAAATTTTAAGCTGAGCAAGTTTGTAGTTGATCACTTTTATCTAGCTTTGATGCTTCTCGAGATATTACGGTATTTCAAAAGGGTGCAGTGGCGCATTGTCTGCGTCTCTTCCGGTGCATGTATCTCGCGAACCGTAGTAGCTATGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>202 146 132 96 82 65 65 49 49 18 17 17 15 15 12 9 6 5</canonical_bands>
                <polymorphic_bands>202 146 132 96 82 65 65 49 49 33 17 17 15 12 9 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGGGAATTTCAAAACATT</pcr_primer_p1>
		<pcr_primer_p2>ATTAGAGGCTATTAGAGAAAAAGTCT</pcr_primer_p2>
		<pcr_amplicon_size>459</pcr_amplicon_size>
		<canonical_amplicon>GAGGGGAATTTCAAAACATTGTTTTGAGCTTTTTTTTGAGTATGGAGCTCTAAGACGCTCATATCTCAAGAATCAGTTGCGCTAGCATAATTTTGTCAACTACAAAATTACTCAGCATAAAATTTTACACATTTTAGTAGTTAACAACTTTTTCTTAGCTATTACGGGTCTTGAGATACAAGCTTTGGAAGAGACGCAGACATTGCGCTTTCCCGAAATACCGCTGTATCTCCAGAAGCGTTAAAGCTATCAAATTTTGGTCAGCTACGAAATTGCTCAGCATACAATTTTACGCATTTTTGTAGTTTATAACTTTTTCCTATCTCCAACGGTTCTCGAGATACGCTTCTATCAAGTTAGCCGAGCTAAAGAGAGACGCAGAGAAGCGATACACTCTTGTTTCTCTGCGTCTCGCTGGCTATTTGGCTCGGAAAGACTTTTTCTCTAATAGCCTCTAAT</canonical_amplicon>
		<polymorphic_amplicon>GAGGGGAATTTCAAAACATTGTTTTGAGCTTTTTTTTGAGTATGGAGCTCTAAGACGCTCATATCTCAAGAATCAGTTGCGCTAGCATAATTTTGTCAACTACAAAATTACTCAGCATAAAATTTTACACATTTTAGTAGTTAACAACTTTTTCTTAGCTATTACGGGTCTTGAGATACAAGCTTTGGAAGAGACGCAGACATTGCGCTTTCCCGAAATACCGCTGTATCTCCAGAAGCGTTAAAGCTATCAAATTTTGGTCAGCTACGAAAYTGCTCAGCATACAATTTTACGCATTTTTGTAGTTTATAACTTTTTCCTATCTCCAACGGTTCTCGAGATACGCTTCTATCAAGTTAGCCGAGCTAAAGAGAGACGCAGAGAAGCGATACACTCTTGTTTCTCTGCGTCTCGCTGGCTATTTGGCTCGGAAAGACTTTTTCTCTAATAGCCTCTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38773</snp_id>
        <super_contig>c013300832.Contig1</super_contig>
        <contig_pos>66050</contig_pos>
        <strand></strand>
        <context>tcgctGGCTA[T/C]TTGGCTCGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGAGACGCAGAGAAGCGATACACTCTTGTTTCTCTGCGTCTCGCTGGCTA</left_flank>
        <right_flank>TTGGCTCGGAAAGACTTTTTCTCTAATAGCCTCTAATAGCTAGAAAAACA</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCGACGGTGATGAATTGAATTCGGATATATATTGGATTTGTTGAATACCTTTTTTTTTTGAAAAGAAAAAGAGAAAGAGGGGAATTTCAAAACATTGTTTTGAGCTTTTTTTTGAGTATGGAGCTCTAAGACGCTCATATCTCAAGAATCAGTTGCGCTAGCATAATTTTGTCAACTACAAAATTACTCAGCATAAAATTTTACACATTTTAGTAGTTAACAACTTTTTCTTAGCTATTACGGGTCTTGAGATACAAGCTTTGGAAGAGACGCAGACATTGCGCTTTCCCGAAATACCGCTGTATCTCCAGAAGCGTTAAAGCTATCAAATTTTGGTCAGCTACGAAATTGCTCAGCATACAATTTTACGCATTTTTGTAGTTTATAACTTTTTCCTATCTCCAACGGTTCTCGAGATACGCTTCTATCAAGTTAGCCGAGCTAAAGAGAGACGCAGAGAAGCGATACACTCTTGTTTCTCTGCGTCTCGCTGGCTATTTGGCTCGGAAAGACTTTTTCTCTAATAGCCTCTAATAGCTAGAAAAACAGAAAAACAAGATTCGAATTGAGTCTGAGCACAGTTTTTTTTTTGAAAAAAAAACATTAAATAGCAATTTTTAAAATTAAAAAAAATAAAAAATTCTCCTCATATCTCATGAACCGTTATAGCTATGAAAAAGTTGCTGACTACAAAAATGTGTAAAATTTTAAGCTGAGCAAGTTTGTAGTTGATCACTTTTATCTAGCTTTGATGCTTCTCGAGATATTACGGTATTTCAAAAGGGTGCAGTGGCGCATTGTCTGCGTCTCTTCCGGTGCATGTATCTCGCGAACCGTAGTAGCTATGAAAAACTTTTCAACTACAAAAATGTCTGAAATTTTATGTTGAGCAAGTTTGTAGTTGACCTAAATTTGGTAGCTCTAATGGTTCTCAAGATATGAGCGTTTGAAAACACCATACCGAAAAATCAGGGCAATTTTGGAAAAAAAACACACAC</canonical>
            <polymorphic>GAGCGACGGTGATGAATTGAATTCGGATATATATTGGATTTGTTGAATACCTTTTTTTTTTGAAAAGAAAAAGAGAAAGAGGGGAATTTCAAAACATTGTTTTGAGCTTTTTTTTGAGTATGGAGCTCTAAGACGCTCATATCTCAAGAATCAGTTGCGCTAGCATAATTTTGTCAACTACAAAATTACTCAGCATAAAATTTTACACATTTTAGTAGTTAACAACTTTTTCTTAGCTATTACGGGTCTTGAGATACAAGCTTTGGAAGAGACGCAGACATTGCGCTTTCCCGAAATACCGCTGTATCTCCAGAAGCGTTAAAGCTATCAAATTTTGGTCAGCTACGAAATTGCTCAGCATACAATTTTACGCATTTTTGTAGTTTATAACTTTTTCCTATCTCCAACGGTTCTCGAGATACGCTTCTATCAAGTTAGCCGAGCTAAAGAGAGACGCAGAGAAGCGATACACTCTTGTTTCTCTGCGTCTCGCTGGCTAYTTGGCTCGGAAAGACTTTTTCTCTAATAGCCTCTAATAGCTAGAAAAACAGAAAAACAAGATTCGAATTGAGTCTGAGCACAGTTTTTTTTTTGAAAAAAAAACATTAAATAGCAATTTTTAAAATTAAAAAAAATAAAAAATTCTCCTCATATCTCATGAACCGTTATAGCTATGAAAAAGTTGCTGACTACAAAAATGTGTAAAATTTTAAGCTGAGCAAGTTTGTAGTTGATCACTTTTATCTAGCTTTGATGCTTCTCGAGATATTACGGTATTTCAAAAGGGTGCAGTGGCGCATTGTCTGCGTCTCTTCCGGTGCATGTATCTCGCGAACCGTAGTAGCTATGAAAAACTTTTCAACTACAAAAATGTCTGAAATTTTATGTTGAGCAAGTTTGTAGTTGACCTAAATTTGGTAGCTCTAATGGTTCTCAAGATATGAGCGTTTGAAAACACCATACCGAAAAATCAGGGCAATTTTGGAAAAAAAACACACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGGGGAATTTCAAAACATT</pcr_primer_p1>
		<pcr_primer_p2>TCTTGTTTTTCTGTTTTTCTAGC</pcr_primer_p2>
		<pcr_amplicon_size>483</pcr_amplicon_size>
		<canonical_amplicon>GAGGGGAATTTCAAAACATTGTTTTGAGCTTTTTTTTGAGTATGGAGCTCTAAGACGCTCATATCTCAAGAATCAGTTGCGCTAGCATAATTTTGTCAACTACAAAATTACTCAGCATAAAATTTTACACATTTTAGTAGTTAACAACTTTTTCTTAGCTATTACGGGTCTTGAGATACAAGCTTTGGAAGAGACGCAGACATTGCGCTTTCCCGAAATACCGCTGTATCTCCAGAAGCGTTAAAGCTATCAAATTTTGGTCAGCTACGAAATTGCTCAGCATACAATTTTACGCATTTTTGTAGTTTATAACTTTTTCCTATCTCCAACGGTTCTCGAGATACGCTTCTATCAAGTTAGCCGAGCTAAAGAGAGACGCAGAGAAGCGATACACTCTTGTTTCTCTGCGTCTCGCTGGCTATTTGGCTCGGAAAGACTTTTTCTCTAATAGCCTCTAATAGCTAGAAAAACAGAAAAACAAGA</canonical_amplicon>
		<polymorphic_amplicon>GAGGGGAATTTCAAAACATTGTTTTGAGCTTTTTTTTGAGTATGGAGCTCTAAGACGCTCATATCTCAAGAATCAGTTGCGCTAGCATAATTTTGTCAACTACAAAATTACTCAGCATAAAATTTTACACATTTTAGTAGTTAACAACTTTTTCTTAGCTATTACGGGTCTTGAGATACAAGCTTTGGAAGAGACGCAGACATTGCGCTTTCCCGAAATACCGCTGTATCTCCAGAAGCGTTAAAGCTATCAAATTTTGGTCAGCTACGAAATTGCTCAGCATACAATTTTACGCATTTTTGTAGTTTATAACTTTTTCCTATCTCCAACGGTTCTCGAGATACGCTTCTATCAAGTTAGCCGAGCTAAAGAGAGACGCAGAGAAGCGATACACTCTTGTTTCTCTGCGTCTCGCTGGCTAYTTGGCTCGGAAAGACTTTTTCTCTAATAGCCTCTAATAGCTAGAAAAACAGAAAAACAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38774</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>9629</contig_pos>
        <strand>+</strand>
        <context>CTTTCCTCCA[C/T]CTAATTATGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAGCAACAGAAACTGTCATCAAAAATCAGAATGCTTCTACTTTCCTCCA</left_flank>
        <right_flank>CTAATTATGGCTGGTCCGACGTTCCAATTGATGCTGTGGATGTTTGGGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCATAATTTTTAATCAATTTTTTGAGTAGAATACCCCAAAAACCTTGAATTTTAAAACAAATTGATAACATTTCGAACCCAAACCTCACAAAAAAATCAAAACGTTATCCTCCAATGCTCGAATATATTGGCTCAAAATTTCTCGATTTTCTTGGTTTTTGGGGCATTCTGAGCCAAAATGCTCCAAAAATGGGTTGAAAATTATAAAATAGATCATAACTTTATTCCAATTTAAATATTCTGGATTTTAAATCAAATTTGTAGTCTTAAAGAAGACTTTTGGGGGGTTCGGTTCATAAAACTTCAATTACCATCGTCGAGAATTCTCTTGGTGACTTTAGCCAAAACTGTCCATGGCGTTGTGAGCATTTCCAGAGAACTCAATGTTGGAATTTTCTGGAAATTCCTCCATCTGCTTGTCCATTGACGGAACATCGCTGATTGGTCAAGCAACAGAAACTGTCATCAAAAATCAGAATGCTTCTACTTTCCTCCATCTAATTATGGCTGGTCCGACGTTCCAATTGATGCTGTGGATGTTTGGGTTATGCGTCATTGAATGGTGGGTCGGACATTGGTGTTTTGGCTCCGTTGGAGGTTCTAACGGTCCTTTATTTCGGGTTTCGTATATGGATTGAAAACACATCCGTAGAGTGGGAAATCCTGCTCGGTTTGCGTTGTAGCGGTGAGCACGAACGGTTAATCTTCGAACTCTTCCTTGCCAGAGCATTTGTCGAGCTTCATGGCTGCGAACGAACTCTCAACTTTCAATTGCTCTGCGATGGGCCCTTTTGGGTCCTTCAATCCATCAGGATATTCAGAAAAATCAATAAAAGAGAGACCAGCAATCGGCCGGTCATGTAGTCATGTCTCTAGCCAAAATCCGATTCTTTTTATTAGGAGAGGGGAAAATACCGACTTACTAAAATCATTGAATTAATTTCAAAAAATGGCAATTGTGTAACTGGGAAAATTTTGAAGCACAGAAATTTCCAAA</canonical>
            <polymorphic>AATTCATAATTTTTAATCAATTTTTTGAGTAGAATACCCCAAAAACCTTGAATTTTAAAACAAATTGATAACATTTCGAACCCAAACCTCACAAAAAAATCAAAACGTTATCCTCCAATGCTCGAATATATTGGCTCAAAATTTCTCGATTTTCTTGGTTTTTGGGGCATTCTGAGCCAAAATGCTCCAAAAATGGGTTGAAAATTATAAAATAGATCATAACTTTATTCCAATTTAAATATTCTGGATTTTAAATCAAATTTGTAGTCTTAAAGAAGACTTTTGGGGGGTTCGGTTCATAAAACTTCAATTACCATCGTCGAGAATTCTCTTGGTGACTTTAGCCAAAACTGTCCATGGCGTTGTGAGCATTTCCAGAGAACTCAATGTTGGAATTTTCTGGAAATTCCTCCATCTGCTTGTCCATTGACGGAACATCGCTGATTGGTCAAGCAACAGAAACTGTCATCAAAAATCAGAATGCTTCTACTTTCCTCCAYCTAATTATGGCTGGTCCGACGTTCCAATTGATGCTGTGGATGTTTGGGTTATGCGTCATTGAATGGTGGGTCGGACATTGGTGTTTTGGCTCCGTTGGAGGTTCTAACGGTCCTTTATTTCGGGTTTCGTATATGGATTGAAAACACATCCGTAGAGTGGGAAATCCTGCTCGGTTTGCGTTGTAGCGGTGAGCACGAACGGTTAATCTTCGAACTCTTCCTTGCCAGAGCATTTGTCGAGCTTCATGGCTGCGAACGAACTCTCAACTTTCAATTGCTCTGCGATGGGCCCTTTTGGGTCCTTCAATCCATCAGGATATTCAGAAAAATCAATAAAAGAGAGACCAGCAATCGGCCGGTCATGTAGTCATGTCTCTAGCCAAAATCCGATTCTTTTTATTAGGAGAGGGGAAAATACCGACTTACTAAAATCATTGAATTAATTTCAAAAAATGGCAATTGTGTAACTGGGAAAATTTTGAAGCACAGAAATTTCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTCCAGAGAACTCAATGTT</pcr_primer_p1>
		<pcr_primer_p2>AATAAAGGACCGTTAGAACCTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTTCCAGAGAACTCAATGTTGGAATTTTCTGGAAATTCCTCCATCTGCTTGTCCATTGACGGAACATCGCTGATTGGTCAAGCAACAGAAACTGTCATCAAAAATCAGAATGCTTCTACTTTCCTCCATCTAATTATGGCTGGTCCGACGTTCCAATTGATGCTGTGGATGTTTGGGTTATGCGTCATTGAATGGTGGGTCGGACATTGGTGTTTTGGCTCCGTTGGAGGTTCTAACGGTCCTTTATT</canonical_amplicon>
		<polymorphic_amplicon>CATTTCCAGAGAACTCAATGTTGGAATTTTCTGGAAATTCCTCCATCTGCTTGTCCATTGACGGAACATCGCTGATTGGTCAAGCAACAGAAACTGTCATCAAAAATCAGAATGCTTCTACTTTCCTCCAYCTAATTATGGCTGGTCCGACGTTCCAATTGATGCTGTGGATGTTTGGGTTATGCGTCATTGAATGGTGGGTCGGACATTGGTGTTTTGGCTCCGTTGGAGGTTCTAACGGTCCTTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38775</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>9773</contig_pos>
        <strand>+</strand>
        <context>TGGATTGAAA[A/G]CACATCCGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTGGAGGTTCTAACGGTCCTTTATTTCGGGTTTCGTATATGGATTGAAA</left_flank>
        <right_flank>CACATCCGTAGAGTGGGAAATCCTGCTCGGTTTGCGTTGTAGCGGTGAGC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGATTTTCTTGGTTTTTGGGGCATTCTGAGCCAAAATGCTCCAAAAATGGGTTGAAAATTATAAAATAGATCATAACTTTATTCCAATTTAAATATTCTGGATTTTAAATCAAATTTGTAGTCTTAAAGAAGACTTTTGGGGGGTTCGGTTCATAAAACTTCAATTACCATCGTCGAGAATTCTCTTGGTGACTTTAGCCAAAACTGTCCATGGCGTTGTGAGCATTTCCAGAGAACTCAATGTTGGAATTTTCTGGAAATTCCTCCATCTGCTTGTCCATTGACGGAACATCGCTGATTGGTCAAGCAACAGAAACTGTCATCAAAAATCAGAATGCTTCTACTTTCCTCCATCTAATTATGGCTGGTCCGACGTTCCAATTGATGCTGTGGATGTTTGGGTTATGCGTCATTGAATGGTGGGTCGGACATTGGTGTTTTGGCTCCGTTGGAGGTTCTAACGGTCCTTTATTTCGGGTTTCGTATATGGATTGAAAACACATCCGTAGAGTGGGAAATCCTGCTCGGTTTGCGTTGTAGCGGTGAGCACGAACGGTTAATCTTCGAACTCTTCCTTGCCAGAGCATTTGTCGAGCTTCATGGCTGCGAACGAACTCTCAACTTTCAATTGCTCTGCGATGGGCCCTTTTGGGTCCTTCAATCCATCAGGATATTCAGAAAAATCAATAAAAGAGAGACCAGCAATCGGCCGGTCATGTAGTCATGTCTCTAGCCAAAATCCGATTCTTTTTATTAGGAGAGGGGAAAATACCGACTTACTAAAATCATTGAATTAATTTCAAAAAATGGCAATTGTGTAACTGGGAAAATTTTGAAGCACAGAAATTTCCAAAAACTTTCAAGATTCTCAAAAGTTCGCTAAAAATGGAACGTTCAGTATAAATAGATGTTGATGTTACAATTTTCGTAAAATTTTCTTAACTCCTATAACAACACACACAACGAATTGAAAAATTTTCCCAAGTTTCTGATAACTG</canonical>
            <polymorphic>CTCGATTTTCTTGGTTTTTGGGGCATTCTGAGCCAAAATGCTCCAAAAATGGGTTGAAAATTATAAAATAGATCATAACTTTATTCCAATTTAAATATTCTGGATTTTAAATCAAATTTGTAGTCTTAAAGAAGACTTTTGGGGGGTTCGGTTCATAAAACTTCAATTACCATCGTCGAGAATTCTCTTGGTGACTTTAGCCAAAACTGTCCATGGCGTTGTGAGCATTTCCAGAGAACTCAATGTTGGAATTTTCTGGAAATTCCTCCATCTGCTTGTCCATTGACGGAACATCGCTGATTGGTCAAGCAACAGAAACTGTCATCAAAAATCAGAATGCTTCTACTTTCCTCCATCTAATTATGGCTGGTCCGACGTTCCAATTGATGCTGTGGATGTTTGGGTTATGCGTCATTGAATGGTGGGTCGGACATTGGTGTTTTGGCTCCGTTGGAGGTTCTAACGGTCCTTTATTTCGGGTTTCGTATATGGATTGAAARCACATCCGTAGAGTGGGAAATCCTGCTCGGTTTGCGTTGTAGCGGTGAGCACGAACGGTTAATCTTCGAACTCTTCCTTGCCAGAGCATTTGTCGAGCTTCATGGCTGCGAACGAACTCTCAACTTTCAATTGCTCTGCGATGGGCCCTTTTGGGTCCTTCAATCCATCAGGATATTCAGAAAAATCAATAAAAGAGAGACCAGCAATCGGCCGGTCATGTAGTCATGTCTCTAGCCAAAATCCGATTCTTTTTATTAGGAGAGGGGAAAATACCGACTTACTAAAATCATTGAATTAATTTCAAAAAATGGCAATTGTGTAACTGGGAAAATTTTGAAGCACAGAAATTTCCAAAAACTTTCAAGATTCTCAAAAGTTCGCTAAAAATGGAACGTTCAGTATAAATAGATGTTGATGTTACAATTTTCGTAAAATTTTCTTAACTCCTATAACAACACACACAACGAATTGAAAAATTTTCCCAAGTTTCTGATAACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAAAAATCAGAATGCTTCTAC</pcr_primer_p1>
		<pcr_primer_p2>GCAAGGAAGAGTTCGAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>ATCAAAAATCAGAATGCTTCTACTTTCCTCCATCTAATTATGGCTGGTCCGACGTTCCAATTGATGCTGTGGATGTTTGGGTTATGCGTCATTGAATGGTGGGTCGGACATTGGTGTTTTGGCTCCGTTGGAGGTTCTAACGGTCCTTTATTTCGGGTTTCGTATATGGATTGAAAACACATCCGTAGAGTGGGAAATCCTGCTCGGTTTGCGTTGTAGCGGTGAGCACGAACGGTTAATCTTCGAACTCTTCCTTGC</canonical_amplicon>
		<polymorphic_amplicon>ATCAAAAATCAGAATGCTTCTACTTTCCTCCATCTAATTATGGCTGGTCCGACGTTCCAATTGATGCTGTGGATGTTTGGGTTATGCGTCATTGAATGGTGGGTCGGACATTGGTGTTTTGGCTCCGTTGGAGGTTCTAACGGTCCTTTATTTCGGGTTTCGTATATGGATTGAAARCACATCCGTAGAGTGGGAAATCCTGCTCGGTTTGCGTTGTAGCGGTGAGCACGAACGGTTAATCTTCGAACTCTTCCTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38776</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>9803</contig_pos>
        <strand>+</strand>
        <context>ATCCTGCTCG[A/G]TTTGCGTTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTCGTATATGGATTGAAAACACATCCGTAGAGTGGGAAATCCTGCTCG</left_flank>
        <right_flank>TTTGCGTTGTAGCGGTGAGCACGAACGGTTAATCTTCGAACTCTTCCTTG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCAAAATGCTCCAAAAATGGGTTGAAAATTATAAAATAGATCATAACTTTATTCCAATTTAAATATTCTGGATTTTAAATCAAATTTGTAGTCTTAAAGAAGACTTTTGGGGGGTTCGGTTCATAAAACTTCAATTACCATCGTCGAGAATTCTCTTGGTGACTTTAGCCAAAACTGTCCATGGCGTTGTGAGCATTTCCAGAGAACTCAATGTTGGAATTTTCTGGAAATTCCTCCATCTGCTTGTCCATTGACGGAACATCGCTGATTGGTCAAGCAACAGAAACTGTCATCAAAAATCAGAATGCTTCTACTTTCCTCCATCTAATTATGGCTGGTCCGACGTTCCAATTGATGCTGTGGATGTTTGGGTTATGCGTCATTGAATGGTGGGTCGGACATTGGTGTTTTGGCTCCGTTGGAGGTTCTAACGGTCCTTTATTTCGGGTTTCGTATATGGATTGAAAACACATCCGTAGAGTGGGAAATCCTGCTCGGTTTGCGTTGTAGCGGTGAGCACGAACGGTTAATCTTCGAACTCTTCCTTGCCAGAGCATTTGTCGAGCTTCATGGCTGCGAACGAACTCTCAACTTTCAATTGCTCTGCGATGGGCCCTTTTGGGTCCTTCAATCCATCAGGATATTCAGAAAAATCAATAAAAGAGAGACCAGCAATCGGCCGGTCATGTAGTCATGTCTCTAGCCAAAATCCGATTCTTTTTATTAGGAGAGGGGAAAATACCGACTTACTAAAATCATTGAATTAATTTCAAAAAATGGCAATTGTGTAACTGGGAAAATTTTGAAGCACAGAAATTTCCAAAAACTTTCAAGATTCTCAAAAGTTCGCTAAAAATGGAACGTTCAGTATAAATAGATGTTGATGTTACAATTTTCGTAAAATTTTCTTAACTCCTATAACAACACACACAACGAATTGAAAAATTTTCCCAAGTTTCTGATAACTGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>AGCCAAAATGCTCCAAAAATGGGTTGAAAATTATAAAATAGATCATAACTTTATTCCAATTTAAATATTCTGGATTTTAAATCAAATTTGTAGTCTTAAAGAAGACTTTTGGGGGGTTCGGTTCATAAAACTTCAATTACCATCGTCGAGAATTCTCTTGGTGACTTTAGCCAAAACTGTCCATGGCGTTGTGAGCATTTCCAGAGAACTCAATGTTGGAATTTTCTGGAAATTCCTCCATCTGCTTGTCCATTGACGGAACATCGCTGATTGGTCAAGCAACAGAAACTGTCATCAAAAATCAGAATGCTTCTACTTTCCTCCATCTAATTATGGCTGGTCCGACGTTCCAATTGATGCTGTGGATGTTTGGGTTATGCGTCATTGAATGGTGGGTCGGACATTGGTGTTTTGGCTCCGTTGGAGGTTCTAACGGTCCTTTATTTCGGGTTTCGTATATGGATTGAAAACACATCCGTAGAGTGGGAAATCCTGCTCGRTTTGCGTTGTAGCGGTGAGCACGAACGGTTAATCTTCGAACTCTTCCTTGCCAGAGCATTTGTCGAGCTTCATGGCTGCGAACGAACTCTCAACTTTCAATTGCTCTGCGATGGGCCCTTTTGGGTCCTTCAATCCATCAGGATATTCAGAAAAATCAATAAAAGAGAGACCAGCAATCGGCCGGTCATGTAGTCATGTCTCTAGCCAAAATCCGATTCTTTTTATTAGGAGAGGGGAAAATACCGACTTACTAAAATCATTGAATTAATTTCAAAAAATGGCAATTGTGTAACTGGGAAAATTTTGAAGCACAGAAATTTCCAAAAACTTTCAAGATTCTCAAAAGTTCGCTAAAAATGGAACGTTCAGTATAAATAGATGTTGATGTTACAATTTTCGTAAAATTTTCTTAACTCCTATAACAACACACACAACGAATTGAAAAATTTTCCCAAGTTTCTGATAACTGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGTTCTAACGGTCCTTTATTT</pcr_primer_p1>
		<pcr_primer_p2>CTGGTCTCTCTTTTATTGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGTTCTAACGGTCCTTTATTTCGGGTTTCGTATATGGATTGAAAACACATCCGTAGAGTGGGAAATCCTGCTCGGTTTGCGTTGTAGCGGTGAGCACGAACGGTTAATCTTCGAACTCTTCCTTGCCAGAGCATTTGTCGAGCTTCATGGCTGCGAACGAACTCTCAACTTTCAATTGCTCTGCGATGGGCCCTTTTGGGTCCTTCAATCCATCAGGATATTCAGAAAAATCAATAAAAGAGAGACCAG</canonical_amplicon>
		<polymorphic_amplicon>AGGTTCTAACGGTCCTTTATTTCGGGTTTCGTATATGGATTGAAAACACATCCGTAGAGTGGGAAATCCTGCTCGRTTTGCGTTGTAGCGGTGAGCACGAACGGTTAATCTTCGAACTCTTCCTTGCCAGAGCATTTGTCGAGCTTCATGGCTGCGAACGAACTCTCAACTTTCAATTGCTCTGCGATGGGCCCTTTTGGGTCCTTCAATCCATCAGGATATTCAGAAAAATCAATAAAAGAGAGACCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38777</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>9891</contig_pos>
        <strand>+</strand>
        <context>GCGAACGAAC[G/T]CTCAACTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAACTCTTCCTTGCCAGAGCATTTGTCGAGCTTCATGGCTGCGAACGAAC</left_flank>
        <right_flank>CTCAACTTTCAATTGCTCTGCGATGGGCCCTTTTGGGTCCTTCAATCCAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTAGTCTTAAAGAAGACTTTTGGGGGGTTCGGTTCATAAAACTTCAATTACCATCGTCGAGAATTCTCTTGGTGACTTTAGCCAAAACTGTCCATGGCGTTGTGAGCATTTCCAGAGAACTCAATGTTGGAATTTTCTGGAAATTCCTCCATCTGCTTGTCCATTGACGGAACATCGCTGATTGGTCAAGCAACAGAAACTGTCATCAAAAATCAGAATGCTTCTACTTTCCTCCATCTAATTATGGCTGGTCCGACGTTCCAATTGATGCTGTGGATGTTTGGGTTATGCGTCATTGAATGGTGGGTCGGACATTGGTGTTTTGGCTCCGTTGGAGGTTCTAACGGTCCTTTATTTCGGGTTTCGTATATGGATTGAAAACACATCCGTAGAGTGGGAAATCCTGCTCGGTTTGCGTTGTAGCGGTGAGCACGAACGGTTAATCTTCGAACTCTTCCTTGCCAGAGCATTTGTCGAGCTTCATGGCTGCGAACGAACTCTCAACTTTCAATTGCTCTGCGATGGGCCCTTTTGGGTCCTTCAATCCATCAGGATATTCAGAAAAATCAATAAAAGAGAGACCAGCAATCGGCCGGTCATGTAGTCATGTCTCTAGCCAAAATCCGATTCTTTTTATTAGGAGAGGGGAAAATACCGACTTACTAAAATCATTGAATTAATTTCAAAAAATGGCAATTGTGTAACTGGGAAAATTTTGAAGCACAGAAATTTCCAAAAACTTTCAAGATTCTCAAAAGTTCGCTAAAAATGGAACGTTCAGTATAAATAGATGTTGATGTTACAATTTTCGTAAAATTTTCTTAACTCCTATAACAACACACACAACGAATTGAAAAATTTTCCCAAGTTTCTGATAACTGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</canonical>
            <polymorphic>TGTAGTCTTAAAGAAGACTTTTGGGGGGTTCGGTTCATAAAACTTCAATTACCATCGTCGAGAATTCTCTTGGTGACTTTAGCCAAAACTGTCCATGGCGTTGTGAGCATTTCCAGAGAACTCAATGTTGGAATTTTCTGGAAATTCCTCCATCTGCTTGTCCATTGACGGAACATCGCTGATTGGTCAAGCAACAGAAACTGTCATCAAAAATCAGAATGCTTCTACTTTCCTCCATCTAATTATGGCTGGTCCGACGTTCCAATTGATGCTGTGGATGTTTGGGTTATGCGTCATTGAATGGTGGGTCGGACATTGGTGTTTTGGCTCCGTTGGAGGTTCTAACGGTCCTTTATTTCGGGTTTCGTATATGGATTGAAAACACATCCGTAGAGTGGGAAATCCTGCTCGGTTTGCGTTGTAGCGGTGAGCACGAACGGTTAATCTTCGAACTCTTCCTTGCCAGAGCATTTGTCGAGCTTCATGGCTGCGAACGAACKCTCAACTTTCAATTGCTCTGCGATGGGCCCTTTTGGGTCCTTCAATCCATCAGGATATTCAGAAAAATCAATAAAAGAGAGACCAGCAATCGGCCGGTCATGTAGTCATGTCTCTAGCCAAAATCCGATTCTTTTTATTAGGAGAGGGGAAAATACCGACTTACTAAAATCATTGAATTAATTTCAAAAAATGGCAATTGTGTAACTGGGAAAATTTTGAAGCACAGAAATTTCCAAAAACTTTCAAGATTCTCAAAAGTTCGCTAAAAATGGAACGTTCAGTATAAATAGATGTTGATGTTACAATTTTCGTAAAATTTTCTTAACTCCTATAACAACACACACAACGAATTGAAAAATTTTCCCAAGTTTCTGATAACTGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGTTCTAACGGTCCTTTATTT</pcr_primer_p1>
		<pcr_primer_p2>CTGGTCTCTCTTTTATTGATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGTTCTAACGGTCCTTTATTTCGGGTTTCGTATATGGATTGAAAACACATCCGTAGAGTGGGAAATCCTGCTCGGTTTGCGTTGTAGCGGTGAGCACGAACGGTTAATCTTCGAACTCTTCCTTGCCAGAGCATTTGTCGAGCTTCATGGCTGCGAACGAACTCTCAACTTTCAATTGCTCTGCGATGGGCCCTTTTGGGTCCTTCAATCCATCAGGATATTCAGAAAAATCAATAAAAGAGAGACCAG</canonical_amplicon>
		<polymorphic_amplicon>AGGTTCTAACGGTCCTTTATTTCGGGTTTCGTATATGGATTGAAAACACATCCGTAGAGTGGGAAATCCTGCTCGGTTTGCGTTGTAGCGGTGAGCACGAACGGTTAATCTTCGAACTCTTCCTTGCCAGAGCATTTGTCGAGCTTCATGGCTGCGAACGAACKCTCAACTTTCAATTGCTCTGCGATGGGCCCTTTTGGGTCCTTCAATCCATCAGGATATTCAGAAAAATCAATAAAAGAGAGACCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38781</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>36344</contig_pos>
        <strand></strand>
        <context>gttgagctga[G/A]ttyaaaaatg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GGCGGAGCCTAGCCGTGTTTAAGCTCATTTTAAAGCTCTTGTTGAGCTGA</left_flank>
        <right_flank>TTCAAAAATGTATGGTTCGTGTGAAAATAATGAAAAATGACAAAGTTATG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCCGAATAATTTGATTTTCTGAACGAATTCGCTCCATTTGACTGGATTAATGCGTTCTCTGCGCCATTTTGGATGGATGCCAAGTGTCCGCCCAACAGGGCGCATTGTTCCTCGGCGAACTCGAATTGCGCGGGAGCTGTGAAGTATTGATAGCATCTGAAAGATTTGAGACATTAAGAGCTTTAAAATGAGCTTAAACATGACTCGATTTGATTTTTTTGAAAACTCGAAAATTGTCAAAAAAATTTTTTTTCGAAAATTTTTTTTTTCCCCAAAACTTGGGCTATAACTCAAAATCTTGGTCCCTAGCAACTTCTTGACTTGTAAATTCGTTTTTCTCGCGTTTTCGGCTTTAAAATGAGCCTGAACACGACTAGGCTCCAACCACTTTGATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAGGTGAAATTTCAAAATGGGCGGAGCCTAGCCGTGTTTAAGCTCATTTTAAAGCTCTTGTTGAGCTGAGTTCAAAAATGTATGGTTCGTGTGAAAATAATGAAAAATGACAAAGTTATGGTATTTTAAAAAAATCCAAAACAACGTTTTTTTTTTTATTTGACTATAACTTGAAATTTCGATTTCTAGCGTATTTCACATTATAGTTAACACCTTTTTCGTTATCATTTTTCGAAAAAAAAAGTGATGCCATTTTGATACGGTGTGTCAAAAGTCCAACTGTTCAATGAACAGGAAGGCAAAAAAAGAAAACTACAGTAACCTGCTCAAATTTTGATGAAAAACGAAACATTTTTGAATTTTTGAACTCAGCTGACTGAGAGCTTCAAAATGAGCCCAAATACGACCCACTTCTGACAATTTTGATTTTTTTCGAATTTTCAAAATGGACCATGCGCCTTTAAACCCAAAAATTCAAGTTTCTCAAAACTATGCCATGTTTCTACTCATTTTGATCGCCTTACTGAGCAAAATCCAAAAATCTGAAAAATTTTGAGTTCCGGCAAAAAT</canonical>
            <polymorphic>AATCCGAATAATTTGATTTTCTGAACGAATTCGCTCCATTTGACTGGATTAATGCGTTCTCTGCGCCATTTTGGATGGATGCCAAGTGTCCGCCCAACAGGGCGCATTGTTCCTCGGCGAACTCGAATTGCGCGGGAGCTGTGAAGTATTGATAGCATCTGAAAGATTTGAGACATTAAGAGCTTTAAAATGAGCTTAAACATGACTCGATTTGATTTTTTTGAAAACTCGAAAATTGTCAAAAAAATTTTTTTTCGAAAATTTTTTTTTTCCCCAAAACTTGGGCTATAACTCAAAATCTTGGTCCCTAGCAACTTCTTGACTTGTAAATTCGTTTTTCTCGCGTTTTCGGCTTTAAAATGAGCCTGAACACGACTAGGCTCCAACCACTTTGATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAGGTGAAATTTCAAAATGGGCGGAGCCTAGCCGTGTTTAAGCTCATTTTAAAGCTCTTGTTGAGCTGARTTCAAAAATGTATGGTTCGTGTGAAAATAATGAAAAATGACAAAGTTATGGTATTTTAAAAAAATCCAAAACAACGTTTTTTTTTTTATTTGACTATAACTTGAAATTTCGATTTCTAGCGTATTTCACATTATAGTTAACACCTTTTTCGTTATCATTTTTCGAAAAAAAAAGTGATGCCATTTTGATACGGTGTGTCAAAAGTCCAACTGTTCAATGAACAGGAAGGCAAAAAAAGAAAACTACAGTAACCTGCTCAAATTTTGATGAAAAACGAAACATTTTTGAATTTTTGAACTCAGCTGACTGAGAGCTTCAAAATGAGCCCAAATACGACCCACTTCTGACAATTTTGATTTTTTTCGAATTTTCAAAATGGACCATGCGCCTTTAAACCCAAAAATTCAAGTTTCTCAAAACTATGCCATGTTTCTACTCATTTTGATCGCCTTACTGAGCAAAATCCAAAAATCTGAAAAATTTTGAGTTCCGGCAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>496 302 147 46 9</canonical_bands>
                <polymorphic_bands>798 147 46 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAGTATTGATAGCATCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>AGGTGTTAACTATAATGTGAAATACG</pcr_primer_p2>
		<pcr_amplicon_size>504</pcr_amplicon_size>
		<canonical_amplicon>TGAAGTATTGATAGCATCTGAAAGATTTGAGACATTAAGAGCTTTAAAATGAGCTTAAACATGACTCGATTTGATTTTTTTGAAAACTCGAAAATTGTCAAAAAAATTTTTTTTCGAAAATTTTTTTTTTCCCCAAAACTTGGGCTATAACTCAAAATCTTGGTCCCTAGCAACTTCTTGACTTGTAAATTCGTTTTTCTCGCGTTTTCGGCTTTAAAATGAGCCTGAACACGACTAGGCTCCAACCACTTTGATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAGGTGAAATTTCAAAATGGGCGGAGCCTAGCCGTGTTTAAGCTCATTTTAAAGCTCTTGTTGAGCTGAGTTCAAAAATGTATGGTTCGTGTGAAAATAATGAAAAATGACAAAGTTATGGTATTTTAAAAAAATCCAAAACAACGTTTTTTTTTTTATTTGACTATAACTTGAAATTTCGATTTCTAGCGTATTTCACATTATAGTTAACACCT</canonical_amplicon>
		<polymorphic_amplicon>TGAAGTATTGATAGCATCTGAAAGATTTGAGACATTAAGAGCTTTAAAATGAGCTTAAACATGACTCGATTTGATTTTTTTGAAAACTCGAAAATTGTCAAAAAAATTTTTTTTCGAAAATTTTTTTTTTCCCCAAAACTTGGGCTATAACTCAAAATCTTGGTCCCTAGCAACTTCTTGACTTGTAAATTCGTTTTTCTCGCGTTTTCGGCTTTAAAATGAGCCTGAACACGACTAGGCTCCAACCACTTTGATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAGGTGAAATTTCAAAATGGGCGGAGCCTAGCCGTGTTTAAGCTCATTTTAAAGCTCTTGTTGAGCTGARTTCAAAAATGTATGGTTCGTGTGAAAATAATGAAAAATGACAAAGTTATGGTATTTTAAAAAAATCCAAAACAACGTTTTTTTTTTTATTTGACTATAACTTGAAATTTCGATTTCTAGCGTATTTCACATTATAGTTAACACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38782</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>36347</contig_pos>
        <strand></strand>
        <context>gagctgartt[C/T]aaaaatgwat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAGCCTAGCCGTGTTTAAGCTCATTTTAAAGCTCTTGTTGAGCTGAGTT</left_flank>
        <right_flank>AAAAATGTATGGTTCGTGTGAAAATAATGAAAAATGACAAAGTTATGGTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGAATAATTTGATTTTCTGAACGAATTCGCTCCATTTGACTGGATTAATGCGTTCTCTGCGCCATTTTGGATGGATGCCAAGTGTCCGCCCAACAGGGCGCATTGTTCCTCGGCGAACTCGAATTGCGCGGGAGCTGTGAAGTATTGATAGCATCTGAAAGATTTGAGACATTAAGAGCTTTAAAATGAGCTTAAACATGACTCGATTTGATTTTTTTGAAAACTCGAAAATTGTCAAAAAAATTTTTTTTCGAAAATTTTTTTTTTCCCCAAAACTTGGGCTATAACTCAAAATCTTGGTCCCTAGCAACTTCTTGACTTGTAAATTCGTTTTTCTCGCGTTTTCGGCTTTAAAATGAGCCTGAACACGACTAGGCTCCAACCACTTTGATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAGGTGAAATTTCAAAATGGGCGGAGCCTAGCCGTGTTTAAGCTCATTTTAAAGCTCTTGTTGAGCTGAGTTCAAAAATGTATGGTTCGTGTGAAAATAATGAAAAATGACAAAGTTATGGTATTTTAAAAAAATCCAAAACAACGTTTTTTTTTTTATTTGACTATAACTTGAAATTTCGATTTCTAGCGTATTTCACATTATAGTTAACACCTTTTTCGTTATCATTTTTCGAAAAAAAAAGTGATGCCATTTTGATACGGTGTGTCAAAAGTCCAACTGTTCAATGAACAGGAAGGCAAAAAAAGAAAACTACAGTAACCTGCTCAAATTTTGATGAAAAACGAAACATTTTTGAATTTTTGAACTCAGCTGACTGAGAGCTTCAAAATGAGCCCAAATACGACCCACTTCTGACAATTTTGATTTTTTTCGAATTTTCAAAATGGACCATGCGCCTTTAAACCCAAAAATTCAAGTTTCTCAAAACTATGCCATGTTTCTACTCATTTTGATCGCCTTACTGAGCAAAATCCAAAAATCTGAAAAATTTTGAGTTCCGGCAAAAATTCA</canonical>
            <polymorphic>CCGAATAATTTGATTTTCTGAACGAATTCGCTCCATTTGACTGGATTAATGCGTTCTCTGCGCCATTTTGGATGGATGCCAAGTGTCCGCCCAACAGGGCGCATTGTTCCTCGGCGAACTCGAATTGCGCGGGAGCTGTGAAGTATTGATAGCATCTGAAAGATTTGAGACATTAAGAGCTTTAAAATGAGCTTAAACATGACTCGATTTGATTTTTTTGAAAACTCGAAAATTGTCAAAAAAATTTTTTTTCGAAAATTTTTTTTTTCCCCAAAACTTGGGCTATAACTCAAAATCTTGGTCCCTAGCAACTTCTTGACTTGTAAATTCGTTTTTCTCGCGTTTTCGGCTTTAAAATGAGCCTGAACACGACTAGGCTCCAACCACTTTGATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAGGTGAAATTTCAAAATGGGCGGAGCCTAGCCGTGTTTAAGCTCATTTTAAAGCTCTTGTTGAGCTGAGTTYAAAAATGTATGGTTCGTGTGAAAATAATGAAAAATGACAAAGTTATGGTATTTTAAAAAAATCCAAAACAACGTTTTTTTTTTTATTTGACTATAACTTGAAATTTCGATTTCTAGCGTATTTCACATTATAGTTAACACCTTTTTCGTTATCATTTTTCGAAAAAAAAAGTGATGCCATTTTGATACGGTGTGTCAAAAGTCCAACTGTTCAATGAACAGGAAGGCAAAAAAAGAAAACTACAGTAACCTGCTCAAATTTTGATGAAAAACGAAACATTTTTGAATTTTTGAACTCAGCTGACTGAGAGCTTCAAAATGAGCCCAAATACGACCCACTTCTGACAATTTTGATTTTTTTCGAATTTTCAAAATGGACCATGCGCCTTTAAACCCAAAAATTCAAGTTTCTCAAAACTATGCCATGTTTCTACTCATTTTGATCGCCTTACTGAGCAAAATCCAAAAATCTGAAAAATTTTGAGTTCCGGCAAAAATTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGTATTGATAGCATCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>AGGTGTTAACTATAATGTGAAATACG</pcr_primer_p2>
		<pcr_amplicon_size>504</pcr_amplicon_size>
		<canonical_amplicon>TGAAGTATTGATAGCATCTGAAAGATTTGAGACATTAAGAGCTTTAAAATGAGCTTAAACATGACTCGATTTGATTTTTTTGAAAACTCGAAAATTGTCAAAAAAATTTTTTTTCGAAAATTTTTTTTTTCCCCAAAACTTGGGCTATAACTCAAAATCTTGGTCCCTAGCAACTTCTTGACTTGTAAATTCGTTTTTCTCGCGTTTTCGGCTTTAAAATGAGCCTGAACACGACTAGGCTCCAACCACTTTGATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAGGTGAAATTTCAAAATGGGCGGAGCCTAGCCGTGTTTAAGCTCATTTTAAAGCTCTTGTTGAGCTGAGTTCAAAAATGTATGGTTCGTGTGAAAATAATGAAAAATGACAAAGTTATGGTATTTTAAAAAAATCCAAAACAACGTTTTTTTTTTTATTTGACTATAACTTGAAATTTCGATTTCTAGCGTATTTCACATTATAGTTAACACCT</canonical_amplicon>
		<polymorphic_amplicon>TGAAGTATTGATAGCATCTGAAAGATTTGAGACATTAAGAGCTTTAAAATGAGCTTAAACATGACTCGATTTGATTTTTTTGAAAACTCGAAAATTGTCAAAAAAATTTTTTTTCGAAAATTTTTTTTTTCCCCAAAACTTGGGCTATAACTCAAAATCTTGGTCCCTAGCAACTTCTTGACTTGTAAATTCGTTTTTCTCGCGTTTTCGGCTTTAAAATGAGCCTGAACACGACTAGGCTCCAACCACTTTGATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAGGTGAAATTTCAAAATGGGCGGAGCCTAGCCGTGTTTAAGCTCATTTTAAAGCTCTTGTTGAGCTGAGTTYAAAAATGTATGGTTCGTGTGAAAATAATGAAAAATGACAAAGTTATGGTATTTTAAAAAAATCCAAAACAACGTTTTTTTTTTTATTTGACTATAACTTGAAATTTCGATTTCTAGCGTATTTCACATTATAGTTAACACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38783</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>36355</contig_pos>
        <strand></strand>
        <context>ttyaaaaatg[T/A]atrgttcgtg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GCCGTGTTTAAGCTCATTTTAAAGCTCTTGTTGAGCTGAGTTCAAAAATG</left_flank>
        <right_flank>ATGGTTCGTGTGAAAATAATGAAAAATGACAAAGTTATGGTATTTTAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGATTTTCTGAACGAATTCGCTCCATTTGACTGGATTAATGCGTTCTCTGCGCCATTTTGGATGGATGCCAAGTGTCCGCCCAACAGGGCGCATTGTTCCTCGGCGAACTCGAATTGCGCGGGAGCTGTGAAGTATTGATAGCATCTGAAAGATTTGAGACATTAAGAGCTTTAAAATGAGCTTAAACATGACTCGATTTGATTTTTTTGAAAACTCGAAAATTGTCAAAAAAATTTTTTTTCGAAAATTTTTTTTTTCCCCAAAACTTGGGCTATAACTCAAAATCTTGGTCCCTAGCAACTTCTTGACTTGTAAATTCGTTTTTCTCGCGTTTTCGGCTTTAAAATGAGCCTGAACACGACTAGGCTCCAACCACTTTGATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAGGTGAAATTTCAAAATGGGCGGAGCCTAGCCGTGTTTAAGCTCATTTTAAAGCTCTTGTTGAGCTGAGTTCAAAAATGTATGGTTCGTGTGAAAATAATGAAAAATGACAAAGTTATGGTATTTTAAAAAAATCCAAAACAACGTTTTTTTTTTTATTTGACTATAACTTGAAATTTCGATTTCTAGCGTATTTCACATTATAGTTAACACCTTTTTCGTTATCATTTTTCGAAAAAAAAAGTGATGCCATTTTGATACGGTGTGTCAAAAGTCCAACTGTTCAATGAACAGGAAGGCAAAAAAAGAAAACTACAGTAACCTGCTCAAATTTTGATGAAAAACGAAACATTTTTGAATTTTTGAACTCAGCTGACTGAGAGCTTCAAAATGAGCCCAAATACGACCCACTTCTGACAATTTTGATTTTTTTCGAATTTTCAAAATGGACCATGCGCCTTTAAACCCAAAAATTCAAGTTTCTCAAAACTATGCCATGTTTCTACTCATTTTGATCGCCTTACTGAGCAAAATCCAAAAATCTGAAAAATTTTGAGTTCCGGCAAAAATTCAGAAAGTTA</canonical>
            <polymorphic>TTTGATTTTCTGAACGAATTCGCTCCATTTGACTGGATTAATGCGTTCTCTGCGCCATTTTGGATGGATGCCAAGTGTCCGCCCAACAGGGCGCATTGTTCCTCGGCGAACTCGAATTGCGCGGGAGCTGTGAAGTATTGATAGCATCTGAAAGATTTGAGACATTAAGAGCTTTAAAATGAGCTTAAACATGACTCGATTTGATTTTTTTGAAAACTCGAAAATTGTCAAAAAAATTTTTTTTCGAAAATTTTTTTTTTCCCCAAAACTTGGGCTATAACTCAAAATCTTGGTCCCTAGCAACTTCTTGACTTGTAAATTCGTTTTTCTCGCGTTTTCGGCTTTAAAATGAGCCTGAACACGACTAGGCTCCAACCACTTTGATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAGGTGAAATTTCAAAATGGGCGGAGCCTAGCCGTGTTTAAGCTCATTTTAAAGCTCTTGTTGAGCTGAGTTCAAAAATGWATGGTTCGTGTGAAAATAATGAAAAATGACAAAGTTATGGTATTTTAAAAAAATCCAAAACAACGTTTTTTTTTTTATTTGACTATAACTTGAAATTTCGATTTCTAGCGTATTTCACATTATAGTTAACACCTTTTTCGTTATCATTTTTCGAAAAAAAAAGTGATGCCATTTTGATACGGTGTGTCAAAAGTCCAACTGTTCAATGAACAGGAAGGCAAAAAAAGAAAACTACAGTAACCTGCTCAAATTTTGATGAAAAACGAAACATTTTTGAATTTTTGAACTCAGCTGACTGAGAGCTTCAAAATGAGCCCAAATACGACCCACTTCTGACAATTTTGATTTTTTTCGAATTTTCAAAATGGACCATGCGCCTTTAAACCCAAAAATTCAAGTTTCTCAAAACTATGCCATGTTTCTACTCATTTTGATCGCCTTACTGAGCAAAATCCAAAAATCTGAAAAATTTTGAGTTCCGGCAAAAATTCAGAAAGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGTATTGATAGCATCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>AGGTGTTAACTATAATGTGAAATACG</pcr_primer_p2>
		<pcr_amplicon_size>504</pcr_amplicon_size>
		<canonical_amplicon>TGAAGTATTGATAGCATCTGAAAGATTTGAGACATTAAGAGCTTTAAAATGAGCTTAAACATGACTCGATTTGATTTTTTTGAAAACTCGAAAATTGTCAAAAAAATTTTTTTTCGAAAATTTTTTTTTTCCCCAAAACTTGGGCTATAACTCAAAATCTTGGTCCCTAGCAACTTCTTGACTTGTAAATTCGTTTTTCTCGCGTTTTCGGCTTTAAAATGAGCCTGAACACGACTAGGCTCCAACCACTTTGATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAGGTGAAATTTCAAAATGGGCGGAGCCTAGCCGTGTTTAAGCTCATTTTAAAGCTCTTGTTGAGCTGAGTTCAAAAATGTATGGTTCGTGTGAAAATAATGAAAAATGACAAAGTTATGGTATTTTAAAAAAATCCAAAACAACGTTTTTTTTTTTATTTGACTATAACTTGAAATTTCGATTTCTAGCGTATTTCACATTATAGTTAACACCT</canonical_amplicon>
		<polymorphic_amplicon>TGAAGTATTGATAGCATCTGAAAGATTTGAGACATTAAGAGCTTTAAAATGAGCTTAAACATGACTCGATTTGATTTTTTTGAAAACTCGAAAATTGTCAAAAAAATTTTTTTTCGAAAATTTTTTTTTTCCCCAAAACTTGGGCTATAACTCAAAATCTTGGTCCCTAGCAACTTCTTGACTTGTAAATTCGTTTTTCTCGCGTTTTCGGCTTTAAAATGAGCCTGAACACGACTAGGCTCCAACCACTTTGATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAGGTGAAATTTCAAAATGGGCGGAGCCTAGCCGTGTTTAAGCTCATTTTAAAGCTCTTGTTGAGCTGAGTTCAAAAATGWATGGTTCGTGTGAAAATAATGAAAAATGACAAAGTTATGGTATTTTAAAAAAATCCAAAACAACGTTTTTTTTTTTATTTGACTATAACTTGAAATTTCGATTTCTAGCGTATTTCACATTATAGTTAACACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38784</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>36358</contig_pos>
        <strand></strand>
        <context>aaaaatgwat[G/A]gttcgtgtga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTGTTTAAGCTCATTTTAAAGCTCTTGTTGAGCTGAGTTCAAAAATGTAT</left_flank>
        <right_flank>GTTCGTGTGAAAATAATGAAAAATGACAAAGTTATGGTATTTTAAAAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTTCTGAACGAATTCGCTCCATTTGACTGGATTAATGCGTTCTCTGCGCCATTTTGGATGGATGCCAAGTGTCCGCCCAACAGGGCGCATTGTTCCTCGGCGAACTCGAATTGCGCGGGAGCTGTGAAGTATTGATAGCATCTGAAAGATTTGAGACATTAAGAGCTTTAAAATGAGCTTAAACATGACTCGATTTGATTTTTTTGAAAACTCGAAAATTGTCAAAAAAATTTTTTTTCGAAAATTTTTTTTTTCCCCAAAACTTGGGCTATAACTCAAAATCTTGGTCCCTAGCAACTTCTTGACTTGTAAATTCGTTTTTCTCGCGTTTTCGGCTTTAAAATGAGCCTGAACACGACTAGGCTCCAACCACTTTGATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAGGTGAAATTTCAAAATGGGCGGAGCCTAGCCGTGTTTAAGCTCATTTTAAAGCTCTTGTTGAGCTGAGTTCAAAAATGTATGGTTCGTGTGAAAATAATGAAAAATGACAAAGTTATGGTATTTTAAAAAAATCCAAAACAACGTTTTTTTTTTTATTTGACTATAACTTGAAATTTCGATTTCTAGCGTATTTCACATTATAGTTAACACCTTTTTCGTTATCATTTTTCGAAAAAAAAAGTGATGCCATTTTGATACGGTGTGTCAAAAGTCCAACTGTTCAATGAACAGGAAGGCAAAAAAAGAAAACTACAGTAACCTGCTCAAATTTTGATGAAAAACGAAACATTTTTGAATTTTTGAACTCAGCTGACTGAGAGCTTCAAAATGAGCCCAAATACGACCCACTTCTGACAATTTTGATTTTTTTCGAATTTTCAAAATGGACCATGCGCCTTTAAACCCAAAAATTCAAGTTTCTCAAAACTATGCCATGTTTCTACTCATTTTGATCGCCTTACTGAGCAAAATCCAAAAATCTGAAAAATTTTGAGTTCCGGCAAAAATTCAGAAAGTTACGG</canonical>
            <polymorphic>GATTTTCTGAACGAATTCGCTCCATTTGACTGGATTAATGCGTTCTCTGCGCCATTTTGGATGGATGCCAAGTGTCCGCCCAACAGGGCGCATTGTTCCTCGGCGAACTCGAATTGCGCGGGAGCTGTGAAGTATTGATAGCATCTGAAAGATTTGAGACATTAAGAGCTTTAAAATGAGCTTAAACATGACTCGATTTGATTTTTTTGAAAACTCGAAAATTGTCAAAAAAATTTTTTTTCGAAAATTTTTTTTTTCCCCAAAACTTGGGCTATAACTCAAAATCTTGGTCCCTAGCAACTTCTTGACTTGTAAATTCGTTTTTCTCGCGTTTTCGGCTTTAAAATGAGCCTGAACACGACTAGGCTCCAACCACTTTGATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAGGTGAAATTTCAAAATGGGCGGAGCCTAGCCGTGTTTAAGCTCATTTTAAAGCTCTTGTTGAGCTGAGTTCAAAAATGTATRGTTCGTGTGAAAATAATGAAAAATGACAAAGTTATGGTATTTTAAAAAAATCCAAAACAACGTTTTTTTTTTTATTTGACTATAACTTGAAATTTCGATTTCTAGCGTATTTCACATTATAGTTAACACCTTTTTCGTTATCATTTTTCGAAAAAAAAAGTGATGCCATTTTGATACGGTGTGTCAAAAGTCCAACTGTTCAATGAACAGGAAGGCAAAAAAAGAAAACTACAGTAACCTGCTCAAATTTTGATGAAAAACGAAACATTTTTGAATTTTTGAACTCAGCTGACTGAGAGCTTCAAAATGAGCCCAAATACGACCCACTTCTGACAATTTTGATTTTTTTCGAATTTTCAAAATGGACCATGCGCCTTTAAACCCAAAAATTCAAGTTTCTCAAAACTATGCCATGTTTCTACTCATTTTGATCGCCTTACTGAGCAAAATCCAAAAATCTGAAAAATTTTGAGTTCCGGCAAAAATTCAGAAAGTTACGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGTATTGATAGCATCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>AGGTGTTAACTATAATGTGAAATACG</pcr_primer_p2>
		<pcr_amplicon_size>504</pcr_amplicon_size>
		<canonical_amplicon>TGAAGTATTGATAGCATCTGAAAGATTTGAGACATTAAGAGCTTTAAAATGAGCTTAAACATGACTCGATTTGATTTTTTTGAAAACTCGAAAATTGTCAAAAAAATTTTTTTTCGAAAATTTTTTTTTTCCCCAAAACTTGGGCTATAACTCAAAATCTTGGTCCCTAGCAACTTCTTGACTTGTAAATTCGTTTTTCTCGCGTTTTCGGCTTTAAAATGAGCCTGAACACGACTAGGCTCCAACCACTTTGATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAGGTGAAATTTCAAAATGGGCGGAGCCTAGCCGTGTTTAAGCTCATTTTAAAGCTCTTGTTGAGCTGAGTTCAAAAATGTATGGTTCGTGTGAAAATAATGAAAAATGACAAAGTTATGGTATTTTAAAAAAATCCAAAACAACGTTTTTTTTTTTATTTGACTATAACTTGAAATTTCGATTTCTAGCGTATTTCACATTATAGTTAACACCT</canonical_amplicon>
		<polymorphic_amplicon>TGAAGTATTGATAGCATCTGAAAGATTTGAGACATTAAGAGCTTTAAAATGAGCTTAAACATGACTCGATTTGATTTTTTTGAAAACTCGAAAATTGTCAAAAAAATTTTTTTTCGAAAATTTTTTTTTTCCCCAAAACTTGGGCTATAACTCAAAATCTTGGTCCCTAGCAACTTCTTGACTTGTAAATTCGTTTTTCTCGCGTTTTCGGCTTTAAAATGAGCCTGAACACGACTAGGCTCCAACCACTTTGATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAGGTGAAATTTCAAAATGGGCGGAGCCTAGCCGTGTTTAAGCTCATTTTAAAGCTCTTGTTGAGCTGAGTTCAAAAATGTATRGTTCGTGTGAAAATAATGAAAAATGACAAAGTTATGGTATTTTAAAAAAATCCAAAACAACGTTTTTTTTTTTATTTGACTATAACTTGAAATTTCGATTTCTAGCGTATTTCACATTATAGTTAACACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38785</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>36460</contig_pos>
        <strand></strand>
        <context>atttcgattt[C/T]TAGCGTATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAAAACAACGTTTTTTTTTTTATTTGACTATAACTTGAAATTTCGATTT</left_flank>
        <right_flank>TAGCGTATTTCACATTATAGTTAACACCTTTTTCGTTATCATTTTTCGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGAACTCGAATTGCGCGGGAGCTGTGAAGTATTGATAGCATCTGAAAGATTTGAGACATTAAGAGCTTTAAAATGAGCTTAAACATGACTCGATTTGATTTTTTTGAAAACTCGAAAATTGTCAAAAAAATTTTTTTTCGAAAATTTTTTTTTTCCCCAAAACTTGGGCTATAACTCAAAATCTTGGTCCCTAGCAACTTCTTGACTTGTAAATTCGTTTTTCTCGCGTTTTCGGCTTTAAAATGAGCCTGAACACGACTAGGCTCCAACCACTTTGATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAGGTGAAATTTCAAAATGGGCGGAGCCTAGCCGTGTTTAAGCTCATTTTAAAGCTCTTGTTGAGCTGAGTTCAAAAATGTATGGTTCGTGTGAAAATAATGAAAAATGACAAAGTTATGGTATTTTAAAAAAATCCAAAACAACGTTTTTTTTTTTATTTGACTATAACTTGAAATTTCGATTTCTAGCGTATTTCACATTATAGTTAACACCTTTTTCGTTATCATTTTTCGAAAAAAAAAGTGATGCCATTTTGATACGGTGTGTCAAAAGTCCAACTGTTCAATGAACAGGAAGGCAAAAAAAGAAAACTACAGTAACCTGCTCAAATTTTGATGAAAAACGAAACATTTTTGAATTTTTGAACTCAGCTGACTGAGAGCTTCAAAATGAGCCCAAATACGACCCACTTCTGACAATTTTGATTTTTTTCGAATTTTCAAAATGGACCATGCGCCTTTAAACCCAAAAATTCAAGTTTCTCAAAACTATGCCATGTTTCTACTCATTTTGATCGCCTTACTGAGCAAAATCCAAAAATCTGAAAAATTTTGAGTTCCGGCAAAAATTCAGAAAGTTACGGTAGTTTCAGTGAACCCGACTGCAAAATGAAAACTACAGTAATCCTTCAATTTTTCGATAAAATTACAAAATATCCACATTTTTGAACTGAGATTGATAAGTG</canonical>
            <polymorphic>GCGAACTCGAATTGCGCGGGAGCTGTGAAGTATTGATAGCATCTGAAAGATTTGAGACATTAAGAGCTTTAAAATGAGCTTAAACATGACTCGATTTGATTTTTTTGAAAACTCGAAAATTGTCAAAAAAATTTTTTTTCGAAAATTTTTTTTTTCCCCAAAACTTGGGCTATAACTCAAAATCTTGGTCCCTAGCAACTTCTTGACTTGTAAATTCGTTTTTCTCGCGTTTTCGGCTTTAAAATGAGCCTGAACACGACTAGGCTCCAACCACTTTGATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAGGTGAAATTTCAAAATGGGCGGAGCCTAGCCGTGTTTAAGCTCATTTTAAAGCTCTTGTTGAGCTGAGTTCAAAAATGTATGGTTCGTGTGAAAATAATGAAAAATGACAAAGTTATGGTATTTTAAAAAAATCCAAAACAACGTTTTTTTTTTTATTTGACTATAACTTGAAATTTCGATTTYTAGCGTATTTCACATTATAGTTAACACCTTTTTCGTTATCATTTTTCGAAAAAAAAAGTGATGCCATTTTGATACGGTGTGTCAAAAGTCCAACTGTTCAATGAACAGGAAGGCAAAAAAAGAAAACTACAGTAACCTGCTCAAATTTTGATGAAAAACGAAACATTTTTGAATTTTTGAACTCAGCTGACTGAGAGCTTCAAAATGAGCCCAAATACGACCCACTTCTGACAATTTTGATTTTTTTCGAATTTTCAAAATGGACCATGCGCCTTTAAACCCAAAAATTCAAGTTTCTCAAAACTATGCCATGTTTCTACTCATTTTGATCGCCTTACTGAGCAAAATCCAAAAATCTGAAAAATTTTGAGTTCCGGCAAAAATTCAGAAAGTTACGGTAGTTTCAGTGAACCCGACTGCAAAATGAAAACTACAGTAATCCTTCAATTTTTCGATAAAATTACAAAATATCCACATTTTTGAACTGAGATTGATAAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 192 158 68 54 28</canonical_bands>
                <polymorphic_bands>658 192 68 54 28</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAGTATTGATAGCATCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>TGACACACCGTATCAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>559</pcr_amplicon_size>
		<canonical_amplicon>TGAAGTATTGATAGCATCTGAAAGATTTGAGACATTAAGAGCTTTAAAATGAGCTTAAACATGACTCGATTTGATTTTTTTGAAAACTCGAAAATTGTCAAAAAAATTTTTTTTCGAAAATTTTTTTTTTCCCCAAAACTTGGGCTATAACTCAAAATCTTGGTCCCTAGCAACTTCTTGACTTGTAAATTCGTTTTTCTCGCGTTTTCGGCTTTAAAATGAGCCTGAACACGACTAGGCTCCAACCACTTTGATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAGGTGAAATTTCAAAATGGGCGGAGCCTAGCCGTGTTTAAGCTCATTTTAAAGCTCTTGTTGAGCTGAGTTCAAAAATGTATGGTTCGTGTGAAAATAATGAAAAATGACAAAGTTATGGTATTTTAAAAAAATCCAAAACAACGTTTTTTTTTTTATTTGACTATAACTTGAAATTTCGATTTCTAGCGTATTTCACATTATAGTTAACACCTTTTTCGTTATCATTTTTCGAAAAAAAAAGTGATGCCATTTTGATACGGTGTGTCA</canonical_amplicon>
		<polymorphic_amplicon>TGAAGTATTGATAGCATCTGAAAGATTTGAGACATTAAGAGCTTTAAAATGAGCTTAAACATGACTCGATTTGATTTTTTTGAAAACTCGAAAATTGTCAAAAAAATTTTTTTTCGAAAATTTTTTTTTTCCCCAAAACTTGGGCTATAACTCAAAATCTTGGTCCCTAGCAACTTCTTGACTTGTAAATTCGTTTTTCTCGCGTTTTCGGCTTTAAAATGAGCCTGAACACGACTAGGCTCCAACCACTTTGATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAGGTGAAATTTCAAAATGGGCGGAGCCTAGCCGTGTTTAAGCTCATTTTAAAGCTCTTGTTGAGCTGAGTTCAAAAATGTATGGTTCGTGTGAAAATAATGAAAAATGACAAAGTTATGGTATTTTAAAAAAATCCAAAACAACGTTTTTTTTTTTATTTGACTATAACTTGAAATTTCGATTTYTAGCGTATTTCACATTATAGTTAACACCTTTTTCGTTATCATTTTTCGAAAAAAAAAGTGATGCCATTTTGATACGGTGTGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38786</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>36502</contig_pos>
        <strand></strand>
        <context>TTCGTTATCA[T/A]TTTTCGAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTCGATTTCTAGCGTATTTCACATTATAGTTAACACCTTTTTCGTTATCA</left_flank>
        <right_flank>TTTTCGAAAAAAAAAGTGATGCCATTTTGATACGGTGTGTCAAAAGTCCA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAAAGATTTGAGACATTAAGAGCTTTAAAATGAGCTTAAACATGACTCGATTTGATTTTTTTGAAAACTCGAAAATTGTCAAAAAAATTTTTTTTCGAAAATTTTTTTTTTCCCCAAAACTTGGGCTATAACTCAAAATCTTGGTCCCTAGCAACTTCTTGACTTGTAAATTCGTTTTTCTCGCGTTTTCGGCTTTAAAATGAGCCTGAACACGACTAGGCTCCAACCACTTTGATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAGGTGAAATTTCAAAATGGGCGGAGCCTAGCCGTGTTTAAGCTCATTTTAAAGCTCTTGTTGAGCTGAGTTCAAAAATGTATGGTTCGTGTGAAAATAATGAAAAATGACAAAGTTATGGTATTTTAAAAAAATCCAAAACAACGTTTTTTTTTTTATTTGACTATAACTTGAAATTTCGATTTCTAGCGTATTTCACATTATAGTTAACACCTTTTTCGTTATCATTTTTCGAAAAAAAAAGTGATGCCATTTTGATACGGTGTGTCAAAAGTCCAACTGTTCAATGAACAGGAAGGCAAAAAAAGAAAACTACAGTAACCTGCTCAAATTTTGATGAAAAACGAAACATTTTTGAATTTTTGAACTCAGCTGACTGAGAGCTTCAAAATGAGCCCAAATACGACCCACTTCTGACAATTTTGATTTTTTTCGAATTTTCAAAATGGACCATGCGCCTTTAAACCCAAAAATTCAAGTTTCTCAAAACTATGCCATGTTTCTACTCATTTTGATCGCCTTACTGAGCAAAATCCAAAAATCTGAAAAATTTTGAGTTCCGGCAAAAATTCAGAAAGTTACGGTAGTTTCAGTGAACCCGACTGCAAAATGAAAACTACAGTAATCCTTCAATTTTTCGATAAAATTACAAAATATCCACATTTTTGAACTGAGATTGATAAGTGCTTCAAAATGAGCCTAAACACGACTAGGCTCCGCCCATTTCG</canonical>
            <polymorphic>CTGAAAGATTTGAGACATTAAGAGCTTTAAAATGAGCTTAAACATGACTCGATTTGATTTTTTTGAAAACTCGAAAATTGTCAAAAAAATTTTTTTTCGAAAATTTTTTTTTTCCCCAAAACTTGGGCTATAACTCAAAATCTTGGTCCCTAGCAACTTCTTGACTTGTAAATTCGTTTTTCTCGCGTTTTCGGCTTTAAAATGAGCCTGAACACGACTAGGCTCCAACCACTTTGATTTTTCAGACGCGTCGCGGTCGTGCGTCGCGTGTCTAGGTGAAATTTCAAAATGGGCGGAGCCTAGCCGTGTTTAAGCTCATTTTAAAGCTCTTGTTGAGCTGAGTTCAAAAATGTATGGTTCGTGTGAAAATAATGAAAAATGACAAAGTTATGGTATTTTAAAAAAATCCAAAACAACGTTTTTTTTTTTATTTGACTATAACTTGAAATTTCGATTTCTAGCGTATTTCACATTATAGTTAACACCTTTTTCGTTATCAWTTTTCGAAAAAAAAAGTGATGCCATTTTGATACGGTGTGTCAAAAGTCCAACTGTTCAATGAACAGGAAGGCAAAAAAAGAAAACTACAGTAACCTGCTCAAATTTTGATGAAAAACGAAACATTTTTGAATTTTTGAACTCAGCTGACTGAGAGCTTCAAAATGAGCCCAAATACGACCCACTTCTGACAATTTTGATTTTTTTCGAATTTTCAAAATGGACCATGCGCCTTTAAACCCAAAAATTCAAGTTTCTCAAAACTATGCCATGTTTCTACTCATTTTGATCGCCTTACTGAGCAAAATCCAAAAATCTGAAAAATTTTGAGTTCCGGCAAAAATTCAGAAAGTTACGGTAGTTTCAGTGAACCCGACTGCAAAATGAAAACTACAGTAATCCTTCAATTTTTCGATAAAATTACAAAATATCCACATTTTTGAACTGAGATTGATAAGTGCTTCAAAATGAGCCTAAACACGACTAGGCTCCGCCCATTTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGTATTGATAGCATCTGAAA</pcr_primer_p1>
		<pcr_primer_p2>ACAGTTGGACTTTTGACACAC</pcr_primer_p2>
		<pcr_amplicon_size>572</pcr_amplicon_size>
		<canonical_amplicon>ATTTTTCGAAAAAAAAAGTGATGCCATTTTGATACGGTGTGTCAAAAGTCCAACTGT</canonical_amplicon>
		<polymorphic_amplicon>AWTTTTCGAAAAAAAAAGTGATGCCATTTTGATACGGTGTGTCAAAAGTCCAACTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38793</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>108031</contig_pos>
        <strand>+</strand>
        <context>GGCGTCAAAG[A/C]CTCCAGAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAATAGAGCCGCTATGACGAGGTCCCAAGGCCCGTTTTCGGCGTCAAAG</left_flank>
        <right_flank>CTCCAGAAAAAAAAGACAGCAGATGGAGAAAATGGTTCATGATGGACGGT</right_flank>
        <qual_score>146</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATTCACCAAAAACTTAGGTAAAACCTACCTTGTCATATTTCAGTAACAATTCAAACTTGATTTTCTTGCCAAGATCGGATTCAGCAAAATTCGGATCAAGAGATTTGAAGAGGCAGAAGAGGTGAGAGATGAAGAGGTTGTCCTGAGATTTCCTGAGATGTTTGTGCGAACGGCATCCCGGCTTTTGCAATGCCTACTGCAAATTATGAATACTTCTCAAACTACTCGCACAGTTCAAATACTAGTACATTATTCCAACATCTGCGCGTTTTTCGTATTTTGGACCTCTATTTTTTCTTGGGACCTCTAAACTATTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTATTTTGGGACCTCTAATTTTTTTTCGGACCTCTATTCTTTTTTGGGACCTCTAAACTAGAATAGAGCCGCTATGACGAGGTCCCAAGGCCCGTTTTCGGCGTCAAAGCCTCCAGAAAAAAAAGACAGCAGATGGAGAAAATGGTTCATGATGGACGGTCCACCTGCTCCTCCTTTTCCTCCTCCTCCTCCTCTCTGCACCCCATCAAATCGAATCGTACTACTAGTACAAACATTCCCAAAAAAGGGGGGTATTCCCCCCTTTCTTTTTGGAAATTGTATTGTTTGTTGTAGCGACAGGTGTGGGGCAAATCAGGGTGATTCGAGAGCATGAGACACGACAGTACATATACGTGTGTATTTGTACATAGTGTCACAGGAGATACGCCCCTTGGGACCCCATTTTTAGCACTATTTACGCATTGGAATAGTGCTAAAAAGTGCTAAAATCTCAATAATTTTGATATTATCGAGAACACACCTTTTAAAATCGGTCTACATTGGATCTGAAATGCCGCTGCTTTAAAAACCAAAAAAAAAACAAACATTGTCTAGAACCCCAAAAATGGTCCAAACTTTCAGAGTCTTCCAGAATCTTCTAGAACTTTCT</canonical>
            <polymorphic>TAATTCACCAAAAACTTAGGTAAAACCTACCTTGTCATATTTCAGTAACAATTCAAACTTGATTTTCTTGCCAAGATCGGATTCAGCAAAATTCGGATCAAGAGATTTGAAGAGGCAGAAGAGGTGAGAGATGAAGAGGTTGTCCTGAGATTTCCTGAGATGTTTGTGCGAACGGCATCCCGGCTTTTGCAATGCCTACTGCAAATTATGAATACTTCTCAAACTACTCGCACAGTTCAAATACTAGTACATTATTCCAACATCTGCGCGTTTTTCGTATTTTGGACCTCTATTTTTTCTTGGGACCTCTAAACTATTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTATTTTGGGACCTCTAATTTTTTTTCGGACCTCTATTCTTTTTTGGGACCTCTAAACTAGAATAGAGCCGCTATGACGAGGTCCCAAGGCCCGTTTTCGGCGTCAAAGMCTCCAGAAAAAAAAGACAGCAGATGGAGAAAATGGTTCATGATGGACGGTCCACCTGCTCCTCCTTTTCCTCCTCCTCCTCCTCTCTGCACCCCATCAAATCGAATCGTACTACTAGTACAAACATTCCCAAAAAAGGGGGGTATTCCCCCCTTTCTTTTTGGAAATTGTATTGTTTGTTGTAGCGACAGGTGTGGGGCAAATCAGGGTGATTCGAGAGCATGAGACACGACAGTACATATACGTGTGTATTTGTACATAGTGTCACAGGAGATACGCCCCTTGGGACCCCATTTTTAGCACTATTTACGCATTGGAATAGTGCTAAAAAGTGCTAAAATCTCAATAATTTTGATATTATCGAGAACACACCTTTTAAAATCGGTCTACATTGGATCTGAAATGCCGCTGCTTTAAAAACCAAAAAAAAAACAAACATTGTCTAGAACCCCAAAAATGGTCCAAACTTTCAGAGTCTTCCAGAATCTTCTAGAACTTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>501 275 183 22 19</canonical_bands>
                <polymorphic_bands>520 275 183 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCCTACTGCAAATTATGAATAC</pcr_primer_p1>
		<pcr_primer_p2>CAATACAATTTCCAAAAAGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>482</pcr_amplicon_size>
		<canonical_amplicon>TGCCTACTGCAAATTATGAATACTTCTCAAACTACTCGCACAGTTCAAATACTAGTACATTATTCCAACATCTGCGCGTTTTTCGTATTTTGGACCTCTATTTTTTCTTGGGACCTCTAAACTATTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTATTTTGGGACCTCTAATTTTTTTTCGGACCTCTATTCTTTTTTGGGACCTCTAAACTAGAATAGAGCCGCTATGACGAGGTCCCAAGGCCCGTTTTCGGCGTCAAAGCCTCCAGAAAAAAAAGACAGCAGATGGAGAAAATGGTTCATGATGGACGGTCCACCTGCTCCTCCTTTTCCTCCTCCTCCTCCTCTCTGCACCCCATCAAATCGAATCGTACTACTAGTACAAACATTCCCAAAAAAGGGGGGTATTCCCCCCTTTCTTTTTGGAAATTGTATTG</canonical_amplicon>
		<polymorphic_amplicon>TGCCTACTGCAAATTATGAATACTTCTCAAACTACTCGCACAGTTCAAATACTAGTACATTATTCCAACATCTGCGCGTTTTTCGTATTTTGGACCTCTATTTTTTCTTGGGACCTCTAAACTATTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTATTTTGGGACCTCTAATTTTTTTTCGGACCTCTATTCTTTTTTGGGACCTCTAAACTAGAATAGAGCCGCTATGACGAGGTCCCAAGGCCCGTTTTCGGCGTCAAAGMCTCCAGAAAAAAAAGACAGCAGATGGAGAAAATGGTTCATGATGGACGGTCCACCTGCTCCTCCTTTTCCTCCTCCTCCTCCTCTCTGCACCCCATCAAATCGAATCGTACTACTAGTACAAACATTCCCAAAAAAGGGGGGTATTCCCCCCTTTCTTTTTGGAAATTGTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38794</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>108085</contig_pos>
        <strand></strand>
        <context>GGACGGtcca[C/T]ctgctcctcc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGAAAAAAAAGACAGCAGATGGAGAAAATGGTTCATGATGGACGGTCCA</left_flank>
        <right_flank>CTGCTCCTCCTTTTCCTCCTCCTCCTCCTCTCTGCACCCCATCAAATCGA</right_flank>
        <qual_score>47</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAACTTGATTTTCTTGCCAAGATCGGATTCAGCAAAATTCGGATCAAGAGATTTGAAGAGGCAGAAGAGGTGAGAGATGAAGAGGTTGTCCTGAGATTTCCTGAGATGTTTGTGCGAACGGCATCCCGGCTTTTGCAATGCCTACTGCAAATTATGAATACTTCTCAAACTACTCGCACAGTTCAAATACTAGTACATTATTCCAACATCTGCGCGTTTTTCGTATTTTGGACCTCTATTTTTTCTTGGGACCTCTAAACTATTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTATTTTGGGACCTCTAATTTTTTTTCGGACCTCTATTCTTTTTTGGGACCTCTAAACTAGAATAGAGCCGCTATGACGAGGTCCCAAGGCCCGTTTTCGGCGTCAAAGCCTCCAGAAAAAAAAGACAGCAGATGGAGAAAATGGTTCATGATGGACGGTCCACCTGCTCCTCCTTTTCCTCCTCCTCCTCCTCTCTGCACCCCATCAAATCGAATCGTACTACTAGTACAAACATTCCCAAAAAAGGGGGGTATTCCCCCCTTTCTTTTTGGAAATTGTATTGTTTGTTGTAGCGACAGGTGTGGGGCAAATCAGGGTGATTCGAGAGCATGAGACACGACAGTACATATACGTGTGTATTTGTACATAGTGTCACAGGAGATACGCCCCTTGGGACCCCATTTTTAGCACTATTTACGCATTGGAATAGTGCTAAAAAGTGCTAAAATCTCAATAATTTTGATATTATCGAGAACACACCTTTTAAAATCGGTCTACATTGGATCTGAAATGCCGCTGCTTTAAAAACCAAAAAAAAAACAAACATTGTCTAGAACCCCAAAAATGGTCCAAACTTTCAGAGTCTTCCAGAATCTTCTAGAACTTTCTCACCATTCAAAAGTCGATATTTAACCTCTTCACATTCATCACCACCTTCTGTCA</canonical>
            <polymorphic>AAACTTGATTTTCTTGCCAAGATCGGATTCAGCAAAATTCGGATCAAGAGATTTGAAGAGGCAGAAGAGGTGAGAGATGAAGAGGTTGTCCTGAGATTTCCTGAGATGTTTGTGCGAACGGCATCCCGGCTTTTGCAATGCCTACTGCAAATTATGAATACTTCTCAAACTACTCGCACAGTTCAAATACTAGTACATTATTCCAACATCTGCGCGTTTTTCGTATTTTGGACCTCTATTTTTTCTTGGGACCTCTAAACTATTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTATTTTGGGACCTCTAATTTTTTTTCGGACCTCTATTCTTTTTTGGGACCTCTAAACTAGAATAGAGCCGCTATGACGAGGTCCCAAGGCCCGTTTTCGGCGTCAAAGCCTCCAGAAAAAAAAGACAGCAGATGGAGAAAATGGTTCATGATGGACGGTCCAYCTGCTCCTCCTTTTCCTCCTCCTCCTCCTCTCTGCACCCCATCAAATCGAATCGTACTACTAGTACAAACATTCCCAAAAAAGGGGGGTATTCCCCCCTTTCTTTTTGGAAATTGTATTGTTTGTTGTAGCGACAGGTGTGGGGCAAATCAGGGTGATTCGAGAGCATGAGACACGACAGTACATATACGTGTGTATTTGTACATAGTGTCACAGGAGATACGCCCCTTGGGACCCCATTTTTAGCACTATTTACGCATTGGAATAGTGCTAAAAAGTGCTAAAATCTCAATAATTTTGATATTATCGAGAACACACCTTTTAAAATCGGTCTACATTGGATCTGAAATGCCGCTGCTTTAAAAACCAAAAAAAAAACAAACATTGTCTAGAACCCCAAAAATGGTCCAAACTTTCAGAGTCTTCCAGAATCTTCTAGAACTTTCTCACCATTCAAAAGTCGATATTTAACCTCTTCACATTCATCACCACCTTCTGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>321 132 103 72 64 42 37 35 35 30 22 18 18 15 15 10 10 9 3 3 2 2 2</canonical_bands>
                <polymorphic_bands>358 132 103 72 64 42 35 35 30 22 18 18 15 15 10 10 9 3 3 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>497 335 168</canonical_bands>
                <polymorphic_bands>832 168</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCCTACTGCAAATTATGAATAC</pcr_primer_p1>
		<pcr_primer_p2>CAATACAATTTCCAAAAAGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>482</pcr_amplicon_size>
		<canonical_amplicon>TGCCTACTGCAAATTATGAATACTTCTCAAACTACTCGCACAGTTCAAATACTAGTACATTATTCCAACATCTGCGCGTTTTTCGTATTTTGGACCTCTATTTTTTCTTGGGACCTCTAAACTATTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTATTTTGGGACCTCTAATTTTTTTTCGGACCTCTATTCTTTTTTGGGACCTCTAAACTAGAATAGAGCCGCTATGACGAGGTCCCAAGGCCCGTTTTCGGCGTCAAAGCCTCCAGAAAAAAAAGACAGCAGATGGAGAAAATGGTTCATGATGGACGGTCCACCTGCTCCTCCTTTTCCTCCTCCTCCTCCTCTCTGCACCCCATCAAATCGAATCGTACTACTAGTACAAACATTCCCAAAAAAGGGGGGTATTCCCCCCTTTCTTTTTGGAAATTGTATTG</canonical_amplicon>
		<polymorphic_amplicon>TGCCTACTGCAAATTATGAATACTTCTCAAACTACTCGCACAGTTCAAATACTAGTACATTATTCCAACATCTGCGCGTTTTTCGTATTTTGGACCTCTATTTTTTCTTGGGACCTCTAAACTATTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTATTTTGGGACCTCTAATTTTTTTTCGGACCTCTATTCTTTTTTGGGACCTCTAAACTAGAATAGAGCCGCTATGACGAGGTCCCAAGGCCCGTTTTCGGCGTCAAAGCCTCCAGAAAAAAAAGACAGCAGATGGAGAAAATGGTTCATGATGGACGGTCCAYCTGCTCCTCCTTTTCCTCCTCCTCCTCCTCTCTGCACCCCATCAAATCGAATCGTACTACTAGTACAAACATTCCCAAAAAAGGGGGGTATTCCCCCCTTTCTTTTTGGAAATTGTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38795</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>108134</contig_pos>
        <strand>+</strand>
        <context>CCATCAAATC[A/G]AATCGTACTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCTGCTCCTCCTTTTCCTCCTCCTCCTCCTCTCTGCACCCCATCAAATC</left_flank>
        <right_flank>AATCGTACTACTAGTACAAACATTCCCAAAAAAGGGGGGTATTCCCCCCT</right_flank>
        <qual_score>148</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTGAAGAGGCAGAAGAGGTGAGAGATGAAGAGGTTGTCCTGAGATTTCCTGAGATGTTTGTGCGAACGGCATCCCGGCTTTTGCAATGCCTACTGCAAATTATGAATACTTCTCAAACTACTCGCACAGTTCAAATACTAGTACATTATTCCAACATCTGCGCGTTTTTCGTATTTTGGACCTCTATTTTTTCTTGGGACCTCTAAACTATTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTATTTTGGGACCTCTAATTTTTTTTCGGACCTCTATTCTTTTTTGGGACCTCTAAACTAGAATAGAGCCGCTATGACGAGGTCCCAAGGCCCGTTTTCGGCGTCAAAGCCTCCAGAAAAAAAAGACAGCAGATGGAGAAAATGGTTCATGATGGACGGTCCACCTGCTCCTCCTTTTCCTCCTCCTCCTCCTCTCTGCACCCCATCAAATCGAATCGTACTACTAGTACAAACATTCCCAAAAAAGGGGGGTATTCCCCCCTTTCTTTTTGGAAATTGTATTGTTTGTTGTAGCGACAGGTGTGGGGCAAATCAGGGTGATTCGAGAGCATGAGACACGACAGTACATATACGTGTGTATTTGTACATAGTGTCACAGGAGATACGCCCCTTGGGACCCCATTTTTAGCACTATTTACGCATTGGAATAGTGCTAAAAAGTGCTAAAATCTCAATAATTTTGATATTATCGAGAACACACCTTTTAAAATCGGTCTACATTGGATCTGAAATGCCGCTGCTTTAAAAACCAAAAAAAAAACAAACATTGTCTAGAACCCCAAAAATGGTCCAAACTTTCAGAGTCTTCCAGAATCTTCTAGAACTTTCTCACCATTCAAAAGTCGATATTTAACCTCTTCACATTCATCACCACCTTCTGTCACCACTCACCATCTCGAGAAACAGTAATCTGATGAGAGATTGCCGATCTC</canonical>
            <polymorphic>GATTTGAAGAGGCAGAAGAGGTGAGAGATGAAGAGGTTGTCCTGAGATTTCCTGAGATGTTTGTGCGAACGGCATCCCGGCTTTTGCAATGCCTACTGCAAATTATGAATACTTCTCAAACTACTCGCACAGTTCAAATACTAGTACATTATTCCAACATCTGCGCGTTTTTCGTATTTTGGACCTCTATTTTTTCTTGGGACCTCTAAACTATTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTATTTTGGGACCTCTAATTTTTTTTCGGACCTCTATTCTTTTTTGGGACCTCTAAACTAGAATAGAGCCGCTATGACGAGGTCCCAAGGCCCGTTTTCGGCGTCAAAGCCTCCAGAAAAAAAAGACAGCAGATGGAGAAAATGGTTCATGATGGACGGTCCACCTGCTCCTCCTTTTCCTCCTCCTCCTCCTCTCTGCACCCCATCAAATCRAATCGTACTACTAGTACAAACATTCCCAAAAAAGGGGGGTATTCCCCCCTTTCTTTTTGGAAATTGTATTGTTTGTTGTAGCGACAGGTGTGGGGCAAATCAGGGTGATTCGAGAGCATGAGACACGACAGTACATATACGTGTGTATTTGTACATAGTGTCACAGGAGATACGCCCCTTGGGACCCCATTTTTAGCACTATTTACGCATTGGAATAGTGCTAAAAAGTGCTAAAATCTCAATAATTTTGATATTATCGAGAACACACCTTTTAAAATCGGTCTACATTGGATCTGAAATGCCGCTGCTTTAAAAACCAAAAAAAAAACAAACATTGTCTAGAACCCCAAAAATGGTCCAAACTTTCAGAGTCTTCCAGAATCTTCTAGAACTTTCTCACCATTCAAAAGTCGATATTTAACCTCTTCACATTCATCACCACCTTCTGTCACCACTCACCATCTCGAGAAACAGTAATCTGATGAGAGATTGCCGATCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 154 147 112 53 35</canonical_bands>
                <polymorphic_bands>611 154 147 53 35</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>500 262 121 107 10</canonical_bands>
                <polymorphic_bands>607 262 121 10</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>500 272 121 107</canonical_bands>
                <polymorphic_bands>607 272 121</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGACAGCAGATGGAGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>CGTATATGTACTGTCGTGTCTCA</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>AAGACAGCAGATGGAGAAAATGGTTCATGATGGACGGTCCACCTGCTCCTCCTTTTCCTCCTCCTCCTCCTCTCTGCACCCCATCAAATCGAATCGTACTACTAGTACAAACATTCCCAAAAAAGGGGGGTATTCCCCCCTTTCTTTTTGGAAATTGTATTGTTTGTTGTAGCGACAGGTGTGGGGCAAATCAGGGTGATTCGAGAGCATGAGACACGACAGTACATATACG</canonical_amplicon>
		<polymorphic_amplicon>AAGACAGCAGATGGAGAAAATGGTTCATGATGGACGGTCCACCTGCTCCTCCTTTTCCTCCTCCTCCTCCTCTCTGCACCCCATCAAATCRAATCGTACTACTAGTACAAACATTCCCAAAAAAGGGGGGTATTCCCCCCTTTCTTTTTGGAAATTGTATTGTTTGTTGTAGCGACAGGTGTGGGGCAAATCAGGGTGATTCGAGAGCATGAGACACGACAGTACATATACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38796</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>108283</contig_pos>
        <strand>+</strand>
        <context>ACGTGTGTAT[G/T]TGTACATAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATCAGGGTGATTCGAGAGCATGAGACACGACAGTACATATACGTGTGTAT</left_flank>
        <right_flank>TGTACATAGTGTCACAGGAGATACGCCCCTTGGGACCCCATTTTTAGCAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTCCAACATCTGCGCGTTTTTCGTATTTTGGACCTCTATTTTTTCTTGGGACCTCTAAACTATTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTATTTTGGGACCTCTAATTTTTTTTCGGACCTCTATTCTTTTTTGGGACCTCTAAACTAGAATAGAGCCGCTATGACGAGGTCCCAAGGCCCGTTTTCGGCGTCAAAGCCTCCAGAAAAAAAAGACAGCAGATGGAGAAAATGGTTCATGATGGACGGTCCACCTGCTCCTCCTTTTCCTCCTCCTCCTCCTCTCTGCACCCCATCAAATCGAATCGTACTACTAGTACAAACATTCCCAAAAAAGGGGGGTATTCCCCCCTTTCTTTTTGGAAATTGTATTGTTTGTTGTAGCGACAGGTGTGGGGCAAATCAGGGTGATTCGAGAGCATGAGACACGACAGTACATATACGTGTGTATTTGTACATAGTGTCACAGGAGATACGCCCCTTGGGACCCCATTTTTAGCACTATTTACGCATTGGAATAGTGCTAAAAAGTGCTAAAATCTCAATAATTTTGATATTATCGAGAACACACCTTTTAAAATCGGTCTACATTGGATCTGAAATGCCGCTGCTTTAAAAACCAAAAAAAAAACAAACATTGTCTAGAACCCCAAAAATGGTCCAAACTTTCAGAGTCTTCCAGAATCTTCTAGAACTTTCTCACCATTCAAAAGTCGATATTTAACCTCTTCACATTCATCACCACCTTCTGTCACCACTCACCATCTCGAGAAACAGTAATCTGATGAGAGATTGCCGATCTCGTCGGGGGGTAATTACCGCGCACATAAACCTCCTCCTGGCCCATTAAGCCTCATCACCCATTATTTCTACAGTAATCCTAATTGATGCCACGTCATCATGCCCTATTGTCTTCTTCTGAATCTGGGCGGGATGAACACAGCAGCGTCGT</canonical>
            <polymorphic>TATTCCAACATCTGCGCGTTTTTCGTATTTTGGACCTCTATTTTTTCTTGGGACCTCTAAACTATTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTATTTTGGGACCTCTAATTTTTTTTCGGACCTCTATTCTTTTTTGGGACCTCTAAACTAGAATAGAGCCGCTATGACGAGGTCCCAAGGCCCGTTTTCGGCGTCAAAGCCTCCAGAAAAAAAAGACAGCAGATGGAGAAAATGGTTCATGATGGACGGTCCACCTGCTCCTCCTTTTCCTCCTCCTCCTCCTCTCTGCACCCCATCAAATCGAATCGTACTACTAGTACAAACATTCCCAAAAAAGGGGGGTATTCCCCCCTTTCTTTTTGGAAATTGTATTGTTTGTTGTAGCGACAGGTGTGGGGCAAATCAGGGTGATTCGAGAGCATGAGACACGACAGTACATATACGTGTGTATKTGTACATAGTGTCACAGGAGATACGCCCCTTGGGACCCCATTTTTAGCACTATTTACGCATTGGAATAGTGCTAAAAAGTGCTAAAATCTCAATAATTTTGATATTATCGAGAACACACCTTTTAAAATCGGTCTACATTGGATCTGAAATGCCGCTGCTTTAAAAACCAAAAAAAAAACAAACATTGTCTAGAACCCCAAAAATGGTCCAAACTTTCAGAGTCTTCCAGAATCTTCTAGAACTTTCTCACCATTCAAAAGTCGATATTTAACCTCTTCACATTCATCACCACCTTCTGTCACCACTCACCATCTCGAGAAACAGTAATCTGATGAGAGATTGCCGATCTCGTCGGGGGGTAATTACCGCGCACATAAACCTCCTCCTGGCCCATTAAGCCTCATCACCCATTATTTCTACAGTAATCCTAATTGATGCCACGTCATCATGCCCTATTGTCTTCTTCTGAATCTGGGCGGGATGAACACAGCAGCGTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTTGGAAATTGTATTGTTT</pcr_primer_p1>
		<pcr_primer_p2>CATTTCAGATCCAATGTAGACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTTGGAAATTGTATTGTTTGTTGTAGCGACAGGTGTGGGGCAAATCAGGGTGATTCGAGAGCATGAGACACGACAGTACATATACGTGTGTATTTGTACATAGTGTCACAGGAGATACGCCCCTTGGGACCCCATTTTTAGCACTATTTACGCATTGGAATAGTGCTAAAAAGTGCTAAAATCTCAATAATTTTGATATTATCGAGAACACACCTTTTAAAATCGGTCTACATTGGATCTGAAATG</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTTGGAAATTGTATTGTTTGTTGTAGCGACAGGTGTGGGGCAAATCAGGGTGATTCGAGAGCATGAGACACGACAGTACATATACGTGTGTATKTGTACATAGTGTCACAGGAGATACGCCCCTTGGGACCCCATTTTTAGCACTATTTACGCATTGGAATAGTGCTAAAAAGTGCTAAAATCTCAATAATTTTGATATTATCGAGAACACACCTTTTAAAATCGGTCTACATTGGATCTGAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38797</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>108322</contig_pos>
        <strand>+</strand>
        <context>CTTGGGACCC[A/C]ATTTTTAGCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TACGTGTGTATTTGTACATAGTGTCACAGGAGATACGCCCCTTGGGACCC</left_flank>
        <right_flank>ATTTTTAGCACTATTTACGCATTGGAATAGTGCTAAAAAGTGCTAAAATC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTTCTTGGGACCTCTAAACTATTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTATTTTGGGACCTCTAATTTTTTTTCGGACCTCTATTCTTTTTTGGGACCTCTAAACTAGAATAGAGCCGCTATGACGAGGTCCCAAGGCCCGTTTTCGGCGTCAAAGCCTCCAGAAAAAAAAGACAGCAGATGGAGAAAATGGTTCATGATGGACGGTCCACCTGCTCCTCCTTTTCCTCCTCCTCCTCCTCTCTGCACCCCATCAAATCGAATCGTACTACTAGTACAAACATTCCCAAAAAAGGGGGGTATTCCCCCCTTTCTTTTTGGAAATTGTATTGTTTGTTGTAGCGACAGGTGTGGGGCAAATCAGGGTGATTCGAGAGCATGAGACACGACAGTACATATACGTGTGTATTTGTACATAGTGTCACAGGAGATACGCCCCTTGGGACCCCATTTTTAGCACTATTTACGCATTGGAATAGTGCTAAAAAGTGCTAAAATCTCAATAATTTTGATATTATCGAGAACACACCTTTTAAAATCGGTCTACATTGGATCTGAAATGCCGCTGCTTTAAAAACCAAAAAAAAAACAAACATTGTCTAGAACCCCAAAAATGGTCCAAACTTTCAGAGTCTTCCAGAATCTTCTAGAACTTTCTCACCATTCAAAAGTCGATATTTAACCTCTTCACATTCATCACCACCTTCTGTCACCACTCACCATCTCGAGAAACAGTAATCTGATGAGAGATTGCCGATCTCGTCGGGGGGTAATTACCGCGCACATAAACCTCCTCCTGGCCCATTAAGCCTCATCACCCATTATTTCTACAGTAATCCTAATTGATGCCACGTCATCATGCCCTATTGTCTTCTTCTGAATCTGGGCGGGATGAACACAGCAGCGTCGTTTTATATGTCACAAAAAACGCGTCTGCGTCTCTCGTTTT</canonical>
            <polymorphic>ATTTTTTCTTGGGACCTCTAAACTATTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTATTTTGGGACCTCTAATTTTTTTTCGGACCTCTATTCTTTTTTGGGACCTCTAAACTAGAATAGAGCCGCTATGACGAGGTCCCAAGGCCCGTTTTCGGCGTCAAAGCCTCCAGAAAAAAAAGACAGCAGATGGAGAAAATGGTTCATGATGGACGGTCCACCTGCTCCTCCTTTTCCTCCTCCTCCTCCTCTCTGCACCCCATCAAATCGAATCGTACTACTAGTACAAACATTCCCAAAAAAGGGGGGTATTCCCCCCTTTCTTTTTGGAAATTGTATTGTTTGTTGTAGCGACAGGTGTGGGGCAAATCAGGGTGATTCGAGAGCATGAGACACGACAGTACATATACGTGTGTATTTGTACATAGTGTCACAGGAGATACGCCCCTTGGGACCCMATTTTTAGCACTATTTACGCATTGGAATAGTGCTAAAAAGTGCTAAAATCTCAATAATTTTGATATTATCGAGAACACACCTTTTAAAATCGGTCTACATTGGATCTGAAATGCCGCTGCTTTAAAAACCAAAAAAAAAACAAACATTGTCTAGAACCCCAAAAATGGTCCAAACTTTCAGAGTCTTCCAGAATCTTCTAGAACTTTCTCACCATTCAAAAGTCGATATTTAACCTCTTCACATTCATCACCACCTTCTGTCACCACTCACCATCTCGAGAAACAGTAATCTGATGAGAGATTGCCGATCTCGTCGGGGGGTAATTACCGCGCACATAAACCTCCTCCTGGCCCATTAAGCCTCATCACCCATTATTTCTACAGTAATCCTAATTGATGCCACGTCATCATGCCCTATTGTCTTCTTCTGAATCTGGGCGGGATGAACACAGCAGCGTCGTTTTATATGTCACAAAAAACGCGTCTGCGTCTCTCGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTTGGAAATTGTATTGTTT</pcr_primer_p1>
		<pcr_primer_p2>CATTTCAGATCCAATGTAGACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTTGGAAATTGTATTGTTTGTTGTAGCGACAGGTGTGGGGCAAATCAGGGTGATTCGAGAGCATGAGACACGACAGTACATATACGTGTGTATTTGTACATAGTGTCACAGGAGATACGCCCCTTGGGACCCCATTTTTAGCACTATTTACGCATTGGAATAGTGCTAAAAAGTGCTAAAATCTCAATAATTTTGATATTATCGAGAACACACCTTTTAAAATCGGTCTACATTGGATCTGAAATG</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTTGGAAATTGTATTGTTTGTTGTAGCGACAGGTGTGGGGCAAATCAGGGTGATTCGAGAGCATGAGACACGACAGTACATATACGTGTGTATTTGTACATAGTGTCACAGGAGATACGCCCCTTGGGACCCMATTTTTAGCACTATTTACGCATTGGAATAGTGCTAAAAAGTGCTAAAATCTCAATAATTTTGATATTATCGAGAACACACCTTTTAAAATCGGTCTACATTGGATCTGAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38798</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>108353</contig_pos>
        <strand>+</strand>
        <context>ATTGGAATAG[C/T]GCTAAAAAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATACGCCCCTTGGGACCCCATTTTTAGCACTATTTACGCATTGGAATAG</left_flank>
        <right_flank>GCTAAAAAGTGCTAAAATCTCAATAATTTTGATATTATCGAGAACACACC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTATTTTGGGACCTCTAATTTTTTTTCGGACCTCTATTCTTTTTTGGGACCTCTAAACTAGAATAGAGCCGCTATGACGAGGTCCCAAGGCCCGTTTTCGGCGTCAAAGCCTCCAGAAAAAAAAGACAGCAGATGGAGAAAATGGTTCATGATGGACGGTCCACCTGCTCCTCCTTTTCCTCCTCCTCCTCCTCTCTGCACCCCATCAAATCGAATCGTACTACTAGTACAAACATTCCCAAAAAAGGGGGGTATTCCCCCCTTTCTTTTTGGAAATTGTATTGTTTGTTGTAGCGACAGGTGTGGGGCAAATCAGGGTGATTCGAGAGCATGAGACACGACAGTACATATACGTGTGTATTTGTACATAGTGTCACAGGAGATACGCCCCTTGGGACCCCATTTTTAGCACTATTTACGCATTGGAATAGTGCTAAAAAGTGCTAAAATCTCAATAATTTTGATATTATCGAGAACACACCTTTTAAAATCGGTCTACATTGGATCTGAAATGCCGCTGCTTTAAAAACCAAAAAAAAAACAAACATTGTCTAGAACCCCAAAAATGGTCCAAACTTTCAGAGTCTTCCAGAATCTTCTAGAACTTTCTCACCATTCAAAAGTCGATATTTAACCTCTTCACATTCATCACCACCTTCTGTCACCACTCACCATCTCGAGAAACAGTAATCTGATGAGAGATTGCCGATCTCGTCGGGGGGTAATTACCGCGCACATAAACCTCCTCCTGGCCCATTAAGCCTCATCACCCATTATTTCTACAGTAATCCTAATTGATGCCACGTCATCATGCCCTATTGTCTTCTTCTGAATCTGGGCGGGATGAACACAGCAGCGTCGTTTTATATGTCACAAAAAACGCGTCTGCGTCTCTCGTTTTAAATGAAAAAGGGCGATTTCAGCACCCCCCC</canonical>
            <polymorphic>GGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTAATTTTTTTTGGGACCTCTATTTTATTTTGGGACCTCTAATTTTTTTTCGGACCTCTATTCTTTTTTGGGACCTCTAAACTAGAATAGAGCCGCTATGACGAGGTCCCAAGGCCCGTTTTCGGCGTCAAAGCCTCCAGAAAAAAAAGACAGCAGATGGAGAAAATGGTTCATGATGGACGGTCCACCTGCTCCTCCTTTTCCTCCTCCTCCTCCTCTCTGCACCCCATCAAATCGAATCGTACTACTAGTACAAACATTCCCAAAAAAGGGGGGTATTCCCCCCTTTCTTTTTGGAAATTGTATTGTTTGTTGTAGCGACAGGTGTGGGGCAAATCAGGGTGATTCGAGAGCATGAGACACGACAGTACATATACGTGTGTATTTGTACATAGTGTCACAGGAGATACGCCCCTTGGGACCCCATTTTTAGCACTATTTACGCATTGGAATAGYGCTAAAAAGTGCTAAAATCTCAATAATTTTGATATTATCGAGAACACACCTTTTAAAATCGGTCTACATTGGATCTGAAATGCCGCTGCTTTAAAAACCAAAAAAAAAACAAACATTGTCTAGAACCCCAAAAATGGTCCAAACTTTCAGAGTCTTCCAGAATCTTCTAGAACTTTCTCACCATTCAAAAGTCGATATTTAACCTCTTCACATTCATCACCACCTTCTGTCACCACTCACCATCTCGAGAAACAGTAATCTGATGAGAGATTGCCGATCTCGTCGGGGGGTAATTACCGCGCACATAAACCTCCTCCTGGCCCATTAAGCCTCATCACCCATTATTTCTACAGTAATCCTAATTGATGCCACGTCATCATGCCCTATTGTCTTCTTCTGAATCTGGGCGGGATGAACACAGCAGCGTCGTTTTATATGTCACAAAAAACGCGTCTGCGTCTCTCGTTTTAAATGAAAAAGGGCGATTTCAGCACCCCCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>231 132 103 64 52 47 37 35 35 34 34 30 23 22 18 18 15 15 10 10 9 7 4 3 3 3 2 2 2</canonical_bands>
                <polymorphic_bands>231 132 103 64 52 47 37 35 35 34 34 32 30 23 18 18 15 15 10 9 7 4 3 3 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTTTTGGAAATTGTATTGTTT</pcr_primer_p1>
		<pcr_primer_p2>CATTTCAGATCCAATGTAGACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTTTTTGGAAATTGTATTGTTTGTTGTAGCGACAGGTGTGGGGCAAATCAGGGTGATTCGAGAGCATGAGACACGACAGTACATATACGTGTGTATTTGTACATAGTGTCACAGGAGATACGCCCCTTGGGACCCCATTTTTAGCACTATTTACGCATTGGAATAGTGCTAAAAAGTGCTAAAATCTCAATAATTTTGATATTATCGAGAACACACCTTTTAAAATCGGTCTACATTGGATCTGAAATG</canonical_amplicon>
		<polymorphic_amplicon>TCTTTTTGGAAATTGTATTGTTTGTTGTAGCGACAGGTGTGGGGCAAATCAGGGTGATTCGAGAGCATGAGACACGACAGTACATATACGTGTGTATTTGTACATAGTGTCACAGGAGATACGCCCCTTGGGACCCCATTTTTAGCACTATTTACGCATTGGAATAGYGCTAAAAAGTGCTAAAATCTCAATAATTTTGATATTATCGAGAACACACCTTTTAAAATCGGTCTACATTGGATCTGAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38799</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>155148</contig_pos>
        <strand></strand>
        <context>cttttgtcgg[A/G]agccgacgtc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGGACCCCGACACCACCTGCCTAAGCTCCGCCCACTTTTCTTTTGTCGG</left_flank>
        <right_flank>AGCCGACGTCCCCTTGGCATCCTGCCAAAACTTAAGCTCCGCCCACGTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAAAATTTTCAAATTAGGAACGTTGAGAGCTTAAAAATGAGTATAAACATGCCTCATTTTGGAGAATTTGGGAAATCTACAGTAATCCCAATTTTAAAGGCGCATGGACCCAAGAAATTTTAAAGTGATGCATAAGCAGGCGTATTTAGGCTCATTTCGAAGCTAATAATGAACTGGGTATGAAAATATGCAAATTCGCACTGAAAATTGGCAAAAAAATTATGCTTTTTGTGATTTTTCAAAGAAAAATTTTTTTCGAAAAATTCCATTTTCTCAATTTCAAGAAAGTTTTTGAAAATTATTCTTAATTTTAAAACAAATCTAGAAAATTCAGCCCTTATAACACCAAACGGTGTCGGCGTTCCGCCAAAAGAAGTGATGTCTGTTTTCTCTGCGTCTCTTCTCCCTCTAATCCCTTTTTGTCTGTCTAGACATGTCCCCTTTTGGCGGGACCCCGACACCACCTGCCTAAGCTCCGCCCACTTTTCTTTTGTCGGAAGCCGACGTCCCCTTGGCATCCTGCCAAAACTTAAGCTCCGCCCACGTTTTTGGGGTATGTAACACCGCTCTGTTCATGATCATTAATAGTCTTCCAATGGACCCTATCTGATTTTTGGGACCTGTTTTTTTTATATTTTTCTGATTATTCCTAGATATTTCCATTTCTATTTTAATTTTTCTGAAACTTCTATATTTTTGGATTCAATGTTTTGAGGTGAGAATATCGGCTCTTTTCTAGTTTAGAGGTCCCAAAAAAATTTAGAGGTCCGAAAAAAAATTAGAGGTCCCAAAATAAAATAGAGGTCCCAAAAAAAATTAGAGGTCCCAAAAAAGTTTAGAGGTCCCAAGAAAAAAATAGATACGAAAAACGCGCAGAAAATACGAAAACCGCGCAGATGTTGGAATAATGTACTAGTATTTGAACTGTGCGAGTAGTTTGAGTTTTAAGGTCTTATAGGATGACATGACTACTCCTAACAATTTTAGCTCCAATTCTC</canonical>
            <polymorphic>ATCAAAATTTTCAAATTAGGAACGTTGAGAGCTTAAAAATGAGTATAAACATGCCTCATTTTGGAGAATTTGGGAAATCTACAGTAATCCCAATTTTAAAGGCGCATGGACCCAAGAAATTTTAAAGTGATGCATAAGCAGGCGTATTTAGGCTCATTTCGAAGCTAATAATGAACTGGGTATGAAAATATGCAAATTCGCACTGAAAATTGGCAAAAAAATTATGCTTTTTGTGATTTTTCAAAGAAAAATTTTTTTCGAAAAATTCCATTTTCTCAATTTCAAGAAAGTTTTTGAAAATTATTCTTAATTTTAAAACAAATCTAGAAAATTCAGCCCTTATAACACCAAACGGTGTCGGCGTTCCGCCAAAAGAAGTGATGTCTGTTTTCTCTGCGTCTCTTCTCCCTCTAATCCCTTTTTGTCTGTCTAGACATGTCCCCTTTTGGCGGGACCCCGACACCACCTGCCTAAGCTCCGCCCACTTTTCTTTTGTCGGRAGCCGACGTCCCCTTGGCATCCTGCCAAAACTTAAGCTCCGCCCACGTTTTTGGGGTATGTAACACCGCTCTGTTCATGATCATTAATAGTCTTCCAATGGACCCTATCTGATTTTTGGGACCTGTTTTTTTTATATTTTTCTGATTATTCCTAGATATTTCCATTTCTATTTTAATTTTTCTGAAACTTCTATATTTTTGGATTCAATGTTTTGAGGTGAGAATATCGGCTCTTTTCTAGTTTAGAGGTCCCAAAAAAATTTAGAGGTCCGAAAAAAAATTAGAGGTCCCAAAATAAAATAGAGGTCCCAAAAAAAATTAGAGGTCCCAAAAAAGTTTAGAGGTCCCAAGAAAAAAATAGATACGAAAAACGCGCAGAAAATACGAAAACCGCGCAGATGTTGGAATAATGTACTAGTATTTGAACTGTGCGAGTAGTTTGAGTTTTAAGGTCTTATAGGATGACATGACTACTCCTAACAATTTTAGCTCCAATTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>498 229 112 88 40 33</canonical_bands>
                <polymorphic_bands>610 229 88 40 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGCCCTTATAACACCAAAC</pcr_primer_p1>
		<pcr_primer_p2>AATCCAAAAATATAGAAGTTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>372</pcr_amplicon_size>
		<canonical_amplicon>CAGCCCTTATAACACCAAACGGTGTCGGCGTTCCGCCAAAAGAAGTGATGTCTGTTTTCTCTGCGTCTCTTCTCCCTCTAATCCCTTTTTGTCTGTCTAGACATGTCCCCTTTTGGCGGGACCCCGACACCACCTGCCTAAGCTCCGCCCACTTTTCTTTTGTCGGAAGCCGACGTCCCCTTGGCATCCTGCCAAAACTTAAGCTCCGCCCACGTTTTTGGGGTATGTAACACCGCTCTGTTCATGATCATTAATAGTCTTCCAATGGACCCTATCTGATTTTTGGGACCTGTTTTTTTTATATTTTTCTGATTATTCCTAGATATTTCCATTTCTATTTTAATTTTTCTGAAACTTCTATATTTTTGGATT</canonical_amplicon>
		<polymorphic_amplicon>CAGCCCTTATAACACCAAACGGTGTCGGCGTTCCGCCAAAAGAAGTGATGTCTGTTTTCTCTGCGTCTCTTCTCCCTCTAATCCCTTTTTGTCTGTCTAGACATGTCCCCTTTTGGCGGGACCCCGACACCACCTGCCTAAGCTCCGCCCACTTTTCTTTTGTCGGRAGCCGACGTCCCCTTGGCATCCTGCCAAAACTTAAGCTCCGCCCACGTTTTTGGGGTATGTAACACCGCTCTGTTCATGATCATTAATAGTCTTCCAATGGACCCTATCTGATTTTTGGGACCTGTTTTTTTTATATTTTTCTGATTATTCCTAGATATTTCCATTTCTATTTTAATTTTTCTGAAACTTCTATATTTTTGGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38800</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>155208</contig_pos>
        <strand></strand>
        <context>tttggggtat[G/A]taacaccgct</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CCCCTTGGCATCCTGCCAAAACTTAAGCTCCGCCCACGTTTTTGGGGTAT</left_flank>
        <right_flank>TAACACCGCTCTGTTCATGATCATTAATAGTCTTCCAATGGACCCTATCT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGGAGAATTTGGGAAATCTACAGTAATCCCAATTTTAAAGGCGCATGGACCCAAGAAATTTTAAAGTGATGCATAAGCAGGCGTATTTAGGCTCATTTCGAAGCTAATAATGAACTGGGTATGAAAATATGCAAATTCGCACTGAAAATTGGCAAAAAAATTATGCTTTTTGTGATTTTTCAAAGAAAAATTTTTTTCGAAAAATTCCATTTTCTCAATTTCAAGAAAGTTTTTGAAAATTATTCTTAATTTTAAAACAAATCTAGAAAATTCAGCCCTTATAACACCAAACGGTGTCGGCGTTCCGCCAAAAGAAGTGATGTCTGTTTTCTCTGCGTCTCTTCTCCCTCTAATCCCTTTTTGTCTGTCTAGACATGTCCCCTTTTGGCGGGACCCCGACACCACCTGCCTAAGCTCCGCCCACTTTTCTTTTGTCGGAAGCCGACGTCCCCTTGGCATCCTGCCAAAACTTAAGCTCCGCCCACGTTTTTGGGGTATGTAACACCGCTCTGTTCATGATCATTAATAGTCTTCCAATGGACCCTATCTGATTTTTGGGACCTGTTTTTTTTATATTTTTCTGATTATTCCTAGATATTTCCATTTCTATTTTAATTTTTCTGAAACTTCTATATTTTTGGATTCAATGTTTTGAGGTGAGAATATCGGCTCTTTTCTAGTTTAGAGGTCCCAAAAAAATTTAGAGGTCCGAAAAAAAATTAGAGGTCCCAAAATAAAATAGAGGTCCCAAAAAAAATTAGAGGTCCCAAAAAAGTTTAGAGGTCCCAAGAAAAAAATAGATACGAAAAACGCGCAGAAAATACGAAAACCGCGCAGATGTTGGAATAATGTACTAGTATTTGAACTGTGCGAGTAGTTTGAGTTTTAAGGTCTTATAGGATGACATGACTACTCCTAACAATTTTAGCTCCAATTCTCTCGCATCTTGCCGATGAACCCAATTTACATATGAGGAAAATTTGGGCAATACAGTAATCA</canonical>
            <polymorphic>TTGGAGAATTTGGGAAATCTACAGTAATCCCAATTTTAAAGGCGCATGGACCCAAGAAATTTTAAAGTGATGCATAAGCAGGCGTATTTAGGCTCATTTCGAAGCTAATAATGAACTGGGTATGAAAATATGCAAATTCGCACTGAAAATTGGCAAAAAAATTATGCTTTTTGTGATTTTTCAAAGAAAAATTTTTTTCGAAAAATTCCATTTTCTCAATTTCAAGAAAGTTTTTGAAAATTATTCTTAATTTTAAAACAAATCTAGAAAATTCAGCCCTTATAACACCAAACGGTGTCGGCGTTCCGCCAAAAGAAGTGATGTCTGTTTTCTCTGCGTCTCTTCTCCCTCTAATCCCTTTTTGTCTGTCTAGACATGTCCCCTTTTGGCGGGACCCCGACACCACCTGCCTAAGCTCCGCCCACTTTTCTTTTGTCGGAAGCCGACGTCCCCTTGGCATCCTGCCAAAACTTAAGCTCCGCCCACGTTTTTGGGGTATRTAACACCGCTCTGTTCATGATCATTAATAGTCTTCCAATGGACCCTATCTGATTTTTGGGACCTGTTTTTTTTATATTTTTCTGATTATTCCTAGATATTTCCATTTCTATTTTAATTTTTCTGAAACTTCTATATTTTTGGATTCAATGTTTTGAGGTGAGAATATCGGCTCTTTTCTAGTTTAGAGGTCCCAAAAAAATTTAGAGGTCCGAAAAAAAATTAGAGGTCCCAAAATAAAATAGAGGTCCCAAAAAAAATTAGAGGTCCCAAAAAAGTTTAGAGGTCCCAAGAAAAAAATAGATACGAAAAACGCGCAGAAAATACGAAAACCGCGCAGATGTTGGAATAATGTACTAGTATTTGAACTGTGCGAGTAGTTTGAGTTTTAAGGTCTTATAGGATGACATGACTACTCCTAACAATTTTAGCTCCAATTCTCTCGCATCTTGCCGATGAACCCAATTTACATATGAGGAAAATTTGGGCAATACAGTAATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGCCCTTATAACACCAAAC</pcr_primer_p1>
		<pcr_primer_p2>AATCCAAAAATATAGAAGTTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>372</pcr_amplicon_size>
		<canonical_amplicon>CAGCCCTTATAACACCAAACGGTGTCGGCGTTCCGCCAAAAGAAGTGATGTCTGTTTTCTCTGCGTCTCTTCTCCCTCTAATCCCTTTTTGTCTGTCTAGACATGTCCCCTTTTGGCGGGACCCCGACACCACCTGCCTAAGCTCCGCCCACTTTTCTTTTGTCGGAAGCCGACGTCCCCTTGGCATCCTGCCAAAACTTAAGCTCCGCCCACGTTTTTGGGGTATGTAACACCGCTCTGTTCATGATCATTAATAGTCTTCCAATGGACCCTATCTGATTTTTGGGACCTGTTTTTTTTATATTTTTCTGATTATTCCTAGATATTTCCATTTCTATTTTAATTTTTCTGAAACTTCTATATTTTTGGATT</canonical_amplicon>
		<polymorphic_amplicon>CAGCCCTTATAACACCAAACGGTGTCGGCGTTCCGCCAAAAGAAGTGATGTCTGTTTTCTCTGCGTCTCTTCTCCCTCTAATCCCTTTTTGTCTGTCTAGACATGTCCCCTTTTGGCGGGACCCCGACACCACCTGCCTAAGCTCCGCCCACTTTTCTTTTGTCGGAAGCCGACGTCCCCTTGGCATCCTGCCAAAACTTAAGCTCCGCCCACGTTTTTGGGGTATRTAACACCGCTCTGTTCATGATCATTAATAGTCTTCCAATGGACCCTATCTGATTTTTGGGACCTGTTTTTTTTATATTTTTCTGATTATTCCTAGATATTTCCATTTCTATTTTAATTTTTCTGAAACTTCTATATTTTTGGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38801</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>155304</contig_pos>
        <strand></strand>
        <context>ttattcctag[A/T]tattTCCATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATCTGATTTTTGGGACCTGTTTTTTTTATATTTTTCTGATTATTCCTAG</left_flank>
        <right_flank>TATTTCCATTTCTATTTTAATTTTTCTGAAACTTCTATATTTTTGGATTC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGAAGCTAATAATGAACTGGGTATGAAAATATGCAAATTCGCACTGAAAATTGGCAAAAAAATTATGCTTTTTGTGATTTTTCAAAGAAAAATTTTTTTCGAAAAATTCCATTTTCTCAATTTCAAGAAAGTTTTTGAAAATTATTCTTAATTTTAAAACAAATCTAGAAAATTCAGCCCTTATAACACCAAACGGTGTCGGCGTTCCGCCAAAAGAAGTGATGTCTGTTTTCTCTGCGTCTCTTCTCCCTCTAATCCCTTTTTGTCTGTCTAGACATGTCCCCTTTTGGCGGGACCCCGACACCACCTGCCTAAGCTCCGCCCACTTTTCTTTTGTCGGAAGCCGACGTCCCCTTGGCATCCTGCCAAAACTTAAGCTCCGCCCACGTTTTTGGGGTATGTAACACCGCTCTGTTCATGATCATTAATAGTCTTCCAATGGACCCTATCTGATTTTTGGGACCTGTTTTTTTTATATTTTTCTGATTATTCCTAGATATTTCCATTTCTATTTTAATTTTTCTGAAACTTCTATATTTTTGGATTCAATGTTTTGAGGTGAGAATATCGGCTCTTTTCTAGTTTAGAGGTCCCAAAAAAATTTAGAGGTCCGAAAAAAAATTAGAGGTCCCAAAATAAAATAGAGGTCCCAAAAAAAATTAGAGGTCCCAAAAAAGTTTAGAGGTCCCAAGAAAAAAATAGATACGAAAAACGCGCAGAAAATACGAAAACCGCGCAGATGTTGGAATAATGTACTAGTATTTGAACTGTGCGAGTAGTTTGAGTTTTAAGGTCTTATAGGATGACATGACTACTCCTAACAATTTTAGCTCCAATTCTCTCGCATCTTGCCGATGAACCCAATTTACATATGAGGAAAATTTGGGCAATACAGTAATCACTCCGTGATTATGCTGTTTCTCAGGCTTAGATAATTGTCAGAAAATATGCATTCCTAAGCCTATTAGAAGTATAAAATATATCATCAACAATTATT</canonical>
            <polymorphic>TTTCGAAGCTAATAATGAACTGGGTATGAAAATATGCAAATTCGCACTGAAAATTGGCAAAAAAATTATGCTTTTTGTGATTTTTCAAAGAAAAATTTTTTTCGAAAAATTCCATTTTCTCAATTTCAAGAAAGTTTTTGAAAATTATTCTTAATTTTAAAACAAATCTAGAAAATTCAGCCCTTATAACACCAAACGGTGTCGGCGTTCCGCCAAAAGAAGTGATGTCTGTTTTCTCTGCGTCTCTTCTCCCTCTAATCCCTTTTTGTCTGTCTAGACATGTCCCCTTTTGGCGGGACCCCGACACCACCTGCCTAAGCTCCGCCCACTTTTCTTTTGTCGGAAGCCGACGTCCCCTTGGCATCCTGCCAAAACTTAAGCTCCGCCCACGTTTTTGGGGTATGTAACACCGCTCTGTTCATGATCATTAATAGTCTTCCAATGGACCCTATCTGATTTTTGGGACCTGTTTTTTTTATATTTTTCTGATTATTCCTAGWTATTTCCATTTCTATTTTAATTTTTCTGAAACTTCTATATTTTTGGATTCAATGTTTTGAGGTGAGAATATCGGCTCTTTTCTAGTTTAGAGGTCCCAAAAAAATTTAGAGGTCCGAAAAAAAATTAGAGGTCCCAAAATAAAATAGAGGTCCCAAAAAAAATTAGAGGTCCCAAAAAAGTTTAGAGGTCCCAAGAAAAAAATAGATACGAAAAACGCGCAGAAAATACGAAAACCGCGCAGATGTTGGAATAATGTACTAGTATTTGAACTGTGCGAGTAGTTTGAGTTTTAAGGTCTTATAGGATGACATGACTACTCCTAACAATTTTAGCTCCAATTCTCTCGCATCTTGCCGATGAACCCAATTTACATATGAGGAAAATTTGGGCAATACAGTAATCACTCCGTGATTATGCTGTTTCTCAGGCTTAGATAATTGTCAGAAAATATGCATTCCTAAGCCTATTAGAAGTATAAAATATATCATCAACAATTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCCCTTATAACACCAAAC</pcr_primer_p1>
		<pcr_primer_p2>CGATATTCTCACCTCAAAACA</pcr_primer_p2>
		<pcr_amplicon_size>396</pcr_amplicon_size>
		<canonical_amplicon>CAGCCCTTATAACACCAAACGGTGTCGGCGTTCCGCCAAAAGAAGTGATGTCTGTTTTCTCTGCGTCTCTTCTCCCTCTAATCCCTTTTTGTCTGTCTAGACATGTCCCCTTTTGGCGGGACCCCGACACCACCTGCCTAAGCTCCGCCCACTTTTCTTTTGTCGGAAGCCGACGTCCCCTTGGCATCCTGCCAAAACTTAAGCTCCGCCCACGTTTTTGGGGTATGTAACACCGCTCTGTTCATGATCATTAATAGTCTTCCAATGGACCCTATCTGATTTTTGGGACCTGTTTTTTTTATATTTTTCTGATTATTCCTAGATATTTCCATTTCTATTTTAATTTTTCTGAAACTTCTATATTTTTGGATTCAATGTTTTGAGGTGAGAATATCG</canonical_amplicon>
		<polymorphic_amplicon>CAGCCCTTATAACACCAAACGGTGTCGGCGTTCCGCCAAAAGAAGTGATGTCTGTTTTCTCTGCGTCTCTTCTCCCTCTAATCCCTTTTTGTCTGTCTAGACATGTCCCCTTTTGGCGGGACCCCGACACCACCTGCCTAAGCTCCGCCCACTTTTCTTTTGTCGGAAGCCGACGTCCCCTTGGCATCCTGCCAAAACTTAAGCTCCGCCCACGTTTTTGGGGTATGTAACACCGCTCTGTTCATGATCATTAATAGTCTTCCAATGGACCCTATCTGATTTTTGGGACCTGTTTTTTTTATATTTTTCTGATTATTCCTAGWTATTTCCATTTCTATTTTAATTTTTCTGAAACTTCTATATTTTTGGATTCAATGTTTTGAGGTGAGAATATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38803</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>168973</contig_pos>
        <strand>+</strand>
        <context>TATGCTGCCA[C/G]ATTTTTGRGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCGAAACTTCCAAAGACAAGGGCGCGGCAATCCCGGATTTTATGCTGCCA</left_flank>
        <right_flank>ATTTTTGAGACGACTGTTTTCCCGGAAATTTCTGGAAATTTCTGGAATTT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTGGGATTACTGTAGATTTTCAAAATTTTCCGAAAATAGGCGTGTTTATACTCATTTTGAAGCAATAAACGCGGAAAATTCAAAAATCGTAGTTTCAAGTGGTTTGGGTTACTGTAGAAAGAGTTAGGACCTGTTAAAAATTAGGAAATTTTCGAACTTTGGCTTATTTAGGCTCATTTTGAAGCTCTAGACGCGGCAAAAAAGGGAGAATTAATTCCAAAAGCTAAAAAAAAAACAAAATTTCAGATTCCGTTTGCTGAGAACGTGTCGACATCTTAATGAGAATCTCCCTATCAAAATTCCAGTGATAATAATCATATTTTCCGGGAAAAATGTGCAAGTTTATCTCCAAAAAGAGCTGAAAATTCCTCCAGAATACACAAAAATCGAGTACGATACGTGTCACGATGTATACGGTACCTACATAGGCTGCAAAATTTGGGAATCTCGAAACTTCCAAAGACAAGGGCGCGGCAATCCCGGATTTTATGCTGCCAGATTTTTGAGACGACTGTTTTCCCGGAAATTTCTGGAAATTTCTGGAATTTGTGTGGATTTTTCGGCTTCTGAAAATCATTCTGAAAATAAAATTTCAGAATTTTTTGAAATTCTGAAATCCCGGATTTCTGAATTCCCTGTGAAAACCCTCTGTGTTTCGGAAATTCGAAAAATTTGATTTTCAATTTTTTCGAGATTTTTCAAATTTCCGAATTCTCGTCGAATAATGAAAAATCTGGAATTGAGGATCTGGAAATTCTAGCAAAATTGAATTCCTGGAAATTTCTGGAAGTTTTGAATTTTGAAAAATTAGCAATTGTCCCAAAATATGAGTCCAATTTCGCCCACTTGAAATCAATTACCCTCACTGTTGTACTACTTAACGTACCGGATTTGATCGAAATTAAAGAGGTGAGCAATTTTTTACTTAAAAAATTTGAATTTGGCGCGTTTAGTGCTTTAAAATGAGCCTAAACAAGCCAAAAAGCCAAACTTTTGAA</canonical>
            <polymorphic>ACTTGGGATTACTGTAGATTTTCAAAATTTTCCGAAAATAGGCGTGTTTATACTCATTTTGAAGCAATAAACGCGGAAAATTCAAAAATCGTAGTTTCAAGTGGTTTGGGTTACTGTAGAAAGAGTTAGGACCTGTTAAAAATTAGGAAATTTTCGAACTTTGGCTTATTTAGGCTCATTTTGAAGCTCTAGACGCGGCAAAAAAGGGAGAATTAATTCCAAAAGCTAAAAAAAAAACAAAATTTCAGATTCCGTTTGCTGAGAACGTGTCGACATCTTAATGAGAATCTCCCTATCAAAATTCCAGTGATAATAATCATATTTTCCGGGAAAAATGTGCAAGTTTATCTCCAAAAAGAGCTGAAAATTCCTCCAGAATACACAAAAATCGAGTACGATACGTGTCACGATGTATACGGTACCTACATAGGCTGCAAAATTTGGGAATCTCGAAACTTCCAAAGACAAGGGCGCGGCAATCCCGGATTTTATGCTGCCASATTTTTGAGACGACTGTTTTCCCGGAAATTTCTGGAAATTTCTGGAATTTGTGTGGATTTTTCGGCTTCTGAAAATCATTCTGAAAATAAAATTTCAGAATTTTTTGAAATTCTGAAATCCCGGATTTCTGAATTCCCTGTGAAAACCCTCTGTGTTTCGGAAATTCGAAAAATTTGATTTTCAATTTTTTCGAGATTTTTCAAATTTCCGAATTCTCGTCGAATAATGAAAAATCTGGAATTGAGGATCTGGAAATTCTAGCAAAATTGAATTCCTGGAAATTTCTGGAAGTTTTGAATTTTGAAAAATTAGCAATTGTCCCAAAATATGAGTCCAATTTCGCCCACTTGAAATCAATTACCCTCACTGTTGTACTACTTAACGTACCGGATTTGATCGAAATTAAAGAGGTGAGCAATTTTTTACTTAAAAAATTTGAATTTGGCGCGTTTAGTGCTTTAAAATGAGCCTAAACAAGCCAAAAAGCCAAACTTTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGTGCAAGTTTATCTCC</pcr_primer_p1>
		<pcr_primer_p2>CGAAAAATCCACACAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGTGCAAGTTTATCTCCAAAAAGAGCTGAAAATTCCTCCAGAATACACAAAAATCGAGTACGATACGTGTCACGATGTATACGGTACCTACATAGGCTGCAAAATTTGGGAATCTCGAAACTTCCAAAGACAAGGGCGCGGCAATCCCGGATTTTATGCTGCCAGATTTTTGAGACGACTGTTTTCCCGGAAATTTCTGGAAATTTCTGGAATTTGTGTGGATTTTTCG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGTGCAAGTTTATCTCCAAAAAGAGCTGAAAATTCCTCCAGAATACACAAAAATCGAGTACGATACGTGTCACGATGTATACGGTACCTACATAGGCTGCAAAATTTGGGAATCTCGAAACTTCCAAAGACAAGGGCGCGGCAATCCCGGATTTTATGCTGCCASATTTTTGAGACGACTGTTTTCCCGGAAATTTCTGGAAATTTCTGGAATTTGTGTGGATTTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38804</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>168981</contig_pos>
        <strand>+</strand>
        <context>CASATTTTTG[A/G]GACGACTGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCAAAGACAAGGGCGCGGCAATCCCGGATTTTATGCTGCCAGATTTTTG</left_flank>
        <right_flank>GACGACTGTTTTCCCGGAAATTTCTGGAAATTTCTGGAATTTGTGTGGAT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTACTGTAGATTTTCAAAATTTTCCGAAAATAGGCGTGTTTATACTCATTTTGAAGCAATAAACGCGGAAAATTCAAAAATCGTAGTTTCAAGTGGTTTGGGTTACTGTAGAAAGAGTTAGGACCTGTTAAAAATTAGGAAATTTTCGAACTTTGGCTTATTTAGGCTCATTTTGAAGCTCTAGACGCGGCAAAAAAGGGAGAATTAATTCCAAAAGCTAAAAAAAAAACAAAATTTCAGATTCCGTTTGCTGAGAACGTGTCGACATCTTAATGAGAATCTCCCTATCAAAATTCCAGTGATAATAATCATATTTTCCGGGAAAAATGTGCAAGTTTATCTCCAAAAAGAGCTGAAAATTCCTCCAGAATACACAAAAATCGAGTACGATACGTGTCACGATGTATACGGTACCTACATAGGCTGCAAAATTTGGGAATCTCGAAACTTCCAAAGACAAGGGCGCGGCAATCCCGGATTTTATGCTGCCAGATTTTTGAGACGACTGTTTTCCCGGAAATTTCTGGAAATTTCTGGAATTTGTGTGGATTTTTCGGCTTCTGAAAATCATTCTGAAAATAAAATTTCAGAATTTTTTGAAATTCTGAAATCCCGGATTTCTGAATTCCCTGTGAAAACCCTCTGTGTTTCGGAAATTCGAAAAATTTGATTTTCAATTTTTTCGAGATTTTTCAAATTTCCGAATTCTCGTCGAATAATGAAAAATCTGGAATTGAGGATCTGGAAATTCTAGCAAAATTGAATTCCTGGAAATTTCTGGAAGTTTTGAATTTTGAAAAATTAGCAATTGTCCCAAAATATGAGTCCAATTTCGCCCACTTGAAATCAATTACCCTCACTGTTGTACTACTTAACGTACCGGATTTGATCGAAATTAAAGAGGTGAGCAATTTTTTACTTAAAAAATTTGAATTTGGCGCGTTTAGTGCTTTAAAATGAGCCTAAACAAGCCAAAAAGCCAAACTTTTGAAGTCTCCGT</canonical>
            <polymorphic>TTACTGTAGATTTTCAAAATTTTCCGAAAATAGGCGTGTTTATACTCATTTTGAAGCAATAAACGCGGAAAATTCAAAAATCGTAGTTTCAAGTGGTTTGGGTTACTGTAGAAAGAGTTAGGACCTGTTAAAAATTAGGAAATTTTCGAACTTTGGCTTATTTAGGCTCATTTTGAAGCTCTAGACGCGGCAAAAAAGGGAGAATTAATTCCAAAAGCTAAAAAAAAAACAAAATTTCAGATTCCGTTTGCTGAGAACGTGTCGACATCTTAATGAGAATCTCCCTATCAAAATTCCAGTGATAATAATCATATTTTCCGGGAAAAATGTGCAAGTTTATCTCCAAAAAGAGCTGAAAATTCCTCCAGAATACACAAAAATCGAGTACGATACGTGTCACGATGTATACGGTACCTACATAGGCTGCAAAATTTGGGAATCTCGAAACTTCCAAAGACAAGGGCGCGGCAATCCCGGATTTTATGCTGCCAGATTTTTGRGACGACTGTTTTCCCGGAAATTTCTGGAAATTTCTGGAATTTGTGTGGATTTTTCGGCTTCTGAAAATCATTCTGAAAATAAAATTTCAGAATTTTTTGAAATTCTGAAATCCCGGATTTCTGAATTCCCTGTGAAAACCCTCTGTGTTTCGGAAATTCGAAAAATTTGATTTTCAATTTTTTCGAGATTTTTCAAATTTCCGAATTCTCGTCGAATAATGAAAAATCTGGAATTGAGGATCTGGAAATTCTAGCAAAATTGAATTCCTGGAAATTTCTGGAAGTTTTGAATTTTGAAAAATTAGCAATTGTCCCAAAATATGAGTCCAATTTCGCCCACTTGAAATCAATTACCCTCACTGTTGTACTACTTAACGTACCGGATTTGATCGAAATTAAAGAGGTGAGCAATTTTTTACTTAAAAAATTTGAATTTGGCGCGTTTAGTGCTTTAAAATGAGCCTAAACAAGCCAAAAAGCCAAACTTTTGAAGTCTCCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGTGCAAGTTTATCTCC</pcr_primer_p1>
		<pcr_primer_p2>CGAAAAATCCACACAAATTC</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGTGCAAGTTTATCTCCAAAAAGAGCTGAAAATTCCTCCAGAATACACAAAAATCGAGTACGATACGTGTCACGATGTATACGGTACCTACATAGGCTGCAAAATTTGGGAATCTCGAAACTTCCAAAGACAAGGGCGCGGCAATCCCGGATTTTATGCTGCCAGATTTTTGAGACGACTGTTTTCCCGGAAATTTCTGGAAATTTCTGGAATTTGTGTGGATTTTTCG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGTGCAAGTTTATCTCCAAAAAGAGCTGAAAATTCCTCCAGAATACACAAAAATCGAGTACGATACGTGTCACGATGTATACGGTACCTACATAGGCTGCAAAATTTGGGAATCTCGAAACTTCCAAAGACAAGGGCGCGGCAATCCCGGATTTTATGCTGCCAGATTTTTGRGACGACTGTTTTCCCGGAAATTTCTGGAAATTTCTGGAATTTGTGTGGATTTTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38805</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>169070</contig_pos>
        <strand></strand>
        <context>Ataaaatttc[A/G]gaattttttg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTGTGTGGATTTTTCGGCTTCTGAAAATCATTCTGAAAATAAAATTTC</left_flank>
        <right_flank>GAATTTTTTGAAATTCTGAAATCCCGGATTTCTGAATTCCCTGTGAAAAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGTGGTTTGGGTTACTGTAGAAAGAGTTAGGACCTGTTAAAAATTAGGAAATTTTCGAACTTTGGCTTATTTAGGCTCATTTTGAAGCTCTAGACGCGGCAAAAAAGGGAGAATTAATTCCAAAAGCTAAAAAAAAAACAAAATTTCAGATTCCGTTTGCTGAGAACGTGTCGACATCTTAATGAGAATCTCCCTATCAAAATTCCAGTGATAATAATCATATTTTCCGGGAAAAATGTGCAAGTTTATCTCCAAAAAGAGCTGAAAATTCCTCCAGAATACACAAAAATCGAGTACGATACGTGTCACGATGTATACGGTACCTACATAGGCTGCAAAATTTGGGAATCTCGAAACTTCCAAAGACAAGGGCGCGGCAATCCCGGATTTTATGCTGCCAGATTTTTGAGACGACTGTTTTCCCGGAAATTTCTGGAAATTTCTGGAATTTGTGTGGATTTTTCGGCTTCTGAAAATCATTCTGAAAATAAAATTTCAGAATTTTTTGAAATTCTGAAATCCCGGATTTCTGAATTCCCTGTGAAAACCCTCTGTGTTTCGGAAATTCGAAAAATTTGATTTTCAATTTTTTCGAGATTTTTCAAATTTCCGAATTCTCGTCGAATAATGAAAAATCTGGAATTGAGGATCTGGAAATTCTAGCAAAATTGAATTCCTGGAAATTTCTGGAAGTTTTGAATTTTGAAAAATTAGCAATTGTCCCAAAATATGAGTCCAATTTCGCCCACTTGAAATCAATTACCCTCACTGTTGTACTACTTAACGTACCGGATTTGATCGAAATTAAAGAGGTGAGCAATTTTTTACTTAAAAAATTTGAATTTGGCGCGTTTAGTGCTTTAAAATGAGCCTAAACAAGCCAAAAAGCCAAACTTTTGAAGTCTCCGTTTTTTGACGGGTCCTAACTTTTCGTACAGTAACCCAAATGCCTCGAAACAGTGATTTTTGAACTTGGCGCATTAAGAGCTTTCAAATGA</canonical>
            <polymorphic>CAAGTGGTTTGGGTTACTGTAGAAAGAGTTAGGACCTGTTAAAAATTAGGAAATTTTCGAACTTTGGCTTATTTAGGCTCATTTTGAAGCTCTAGACGCGGCAAAAAAGGGAGAATTAATTCCAAAAGCTAAAAAAAAAACAAAATTTCAGATTCCGTTTGCTGAGAACGTGTCGACATCTTAATGAGAATCTCCCTATCAAAATTCCAGTGATAATAATCATATTTTCCGGGAAAAATGTGCAAGTTTATCTCCAAAAAGAGCTGAAAATTCCTCCAGAATACACAAAAATCGAGTACGATACGTGTCACGATGTATACGGTACCTACATAGGCTGCAAAATTTGGGAATCTCGAAACTTCCAAAGACAAGGGCGCGGCAATCCCGGATTTTATGCTGCCAGATTTTTGAGACGACTGTTTTCCCGGAAATTTCTGGAAATTTCTGGAATTTGTGTGGATTTTTCGGCTTCTGAAAATCATTCTGAAAATAAAATTTCRGAATTTTTTGAAATTCTGAAATCCCGGATTTCTGAATTCCCTGTGAAAACCCTCTGTGTTTCGGAAATTCGAAAAATTTGATTTTCAATTTTTTCGAGATTTTTCAAATTTCCGAATTCTCGTCGAATAATGAAAAATCTGGAATTGAGGATCTGGAAATTCTAGCAAAATTGAATTCCTGGAAATTTCTGGAAGTTTTGAATTTTGAAAAATTAGCAATTGTCCCAAAATATGAGTCCAATTTCGCCCACTTGAAATCAATTACCCTCACTGTTGTACTACTTAACGTACCGGATTTGATCGAAATTAAAGAGGTGAGCAATTTTTTACTTAAAAAATTTGAATTTGGCGCGTTTAGTGCTTTAAAATGAGCCTAAACAAGCCAAAAAGCCAAACTTTTGAAGTCTCCGTTTTTTGACGGGTCCTAACTTTTCGTACAGTAACCCAAATGCCTCGAAACAGTGATTTTTGAACTTGGCGCATTAAGAGCTTTCAAATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAATTTGTGTGGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CATATTTTGGGACAATTGCTA</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>TGGAATTTGTGTGGATTTTTCGGCTTCTGAAAATCATTCTGAAAATAAAATTTCAGAATTTTTTGAAATTCTGAAATCCCGGATTTCTGAATTCCCTGTGAAAACCCTCTGTGTTTCGGAAATTCGAAAAATTTGATTTTCAATTTTTTCGAGATTTTTCAAATTTCCGAATTCTCGTCGAATAATGAAAAATCTGGAATTGAGGATCTGGAAATTCTAGCAAAATTGAATTCCTGGAAATTTCTGGAAGTTTTGAATTTTGAAAAATTAGCAATTGTCCCAAAATATG</canonical_amplicon>
		<polymorphic_amplicon>TGGAATTTGTGTGGATTTTTCGGCTTCTGAAAATCATTCTGAAAATAAAATTTCRGAATTTTTTGAAATTCTGAAATCCCGGATTTCTGAATTCCCTGTGAAAACCCTCTGTGTTTCGGAAATTCGAAAAATTTGATTTTCAATTTTTTCGAGATTTTTCAAATTTCCGAATTCTCGTCGAATAATGAAAAATCTGGAATTGAGGATCTGGAAATTCTAGCAAAATTGAATTCCTGGAAATTTCTGGAAGTTTTGAATTTTGAAAAATTAGCAATTGTCCCAAAATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38806</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>169084</contig_pos>
        <strand></strand>
        <context>ttttttgaaa[T/C]tctgaaatsc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCGGCTTCTGAAAATCATTCTGAAAATAAAATTTCAGAATTTTTTGAAA</left_flank>
        <right_flank>TCTGAAATCCCGGATTTCTGAATTCCCTGTGAAAACCCTCTGTGTTTCGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TACTGTAGAAAGAGTTAGGACCTGTTAAAAATTAGGAAATTTTCGAACTTTGGCTTATTTAGGCTCATTTTGAAGCTCTAGACGCGGCAAAAAAGGGAGAATTAATTCCAAAAGCTAAAAAAAAAACAAAATTTCAGATTCCGTTTGCTGAGAACGTGTCGACATCTTAATGAGAATCTCCCTATCAAAATTCCAGTGATAATAATCATATTTTCCGGGAAAAATGTGCAAGTTTATCTCCAAAAAGAGCTGAAAATTCCTCCAGAATACACAAAAATCGAGTACGATACGTGTCACGATGTATACGGTACCTACATAGGCTGCAAAATTTGGGAATCTCGAAACTTCCAAAGACAAGGGCGCGGCAATCCCGGATTTTATGCTGCCAGATTTTTGAGACGACTGTTTTCCCGGAAATTTCTGGAAATTTCTGGAATTTGTGTGGATTTTTCGGCTTCTGAAAATCATTCTGAAAATAAAATTTCAGAATTTTTTGAAATTCTGAAATCCCGGATTTCTGAATTCCCTGTGAAAACCCTCTGTGTTTCGGAAATTCGAAAAATTTGATTTTCAATTTTTTCGAGATTTTTCAAATTTCCGAATTCTCGTCGAATAATGAAAAATCTGGAATTGAGGATCTGGAAATTCTAGCAAAATTGAATTCCTGGAAATTTCTGGAAGTTTTGAATTTTGAAAAATTAGCAATTGTCCCAAAATATGAGTCCAATTTCGCCCACTTGAAATCAATTACCCTCACTGTTGTACTACTTAACGTACCGGATTTGATCGAAATTAAAGAGGTGAGCAATTTTTTACTTAAAAAATTTGAATTTGGCGCGTTTAGTGCTTTAAAATGAGCCTAAACAAGCCAAAAAGCCAAACTTTTGAAGTCTCCGTTTTTTGACGGGTCCTAACTTTTCGTACAGTAACCCAAATGCCTCGAAACAGTGATTTTTGAACTTGGCGCATTAAGAGCTTTCAAATGAGTATAAACATGCCT</canonical>
            <polymorphic>TACTGTAGAAAGAGTTAGGACCTGTTAAAAATTAGGAAATTTTCGAACTTTGGCTTATTTAGGCTCATTTTGAAGCTCTAGACGCGGCAAAAAAGGGAGAATTAATTCCAAAAGCTAAAAAAAAAACAAAATTTCAGATTCCGTTTGCTGAGAACGTGTCGACATCTTAATGAGAATCTCCCTATCAAAATTCCAGTGATAATAATCATATTTTCCGGGAAAAATGTGCAAGTTTATCTCCAAAAAGAGCTGAAAATTCCTCCAGAATACACAAAAATCGAGTACGATACGTGTCACGATGTATACGGTACCTACATAGGCTGCAAAATTTGGGAATCTCGAAACTTCCAAAGACAAGGGCGCGGCAATCCCGGATTTTATGCTGCCAGATTTTTGAGACGACTGTTTTCCCGGAAATTTCTGGAAATTTCTGGAATTTGTGTGGATTTTTCGGCTTCTGAAAATCATTCTGAAAATAAAATTTCAGAATTTTTTGAAAYTCTGAAATCCCGGATTTCTGAATTCCCTGTGAAAACCCTCTGTGTTTCGGAAATTCGAAAAATTTGATTTTCAATTTTTTCGAGATTTTTCAAATTTCCGAATTCTCGTCGAATAATGAAAAATCTGGAATTGAGGATCTGGAAATTCTAGCAAAATTGAATTCCTGGAAATTTCTGGAAGTTTTGAATTTTGAAAAATTAGCAATTGTCCCAAAATATGAGTCCAATTTCGCCCACTTGAAATCAATTACCCTCACTGTTGTACTACTTAACGTACCGGATTTGATCGAAATTAAAGAGGTGAGCAATTTTTTACTTAAAAAATTTGAATTTGGCGCGTTTAGTGCTTTAAAATGAGCCTAAACAAGCCAAAAAGCCAAACTTTTGAAGTCTCCGTTTTTTGACGGGTCCTAACTTTTCGTACAGTAACCCAAATGCCTCGAAACAGTGATTTTTGAACTTGGCGCATTAAGAGCTTTCAAATGAGTATAAACATGCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>172 136 92 89 72 66 59 45 43 37 32 31 23 17 16 10 10 10 9 9 8 8 6</canonical_bands>
                <polymorphic_bands>172 136 92 89 72 66 59 45 43 37 33 32 31 17 16 10 10 9 9 8 8 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>172 89 72 66 62 59 45 45 31 29 28 26 23 22 20 20 17 16 16 15 12 11 10 10 10 10 9 9 8 8 8 7 6 5 4</canonical_bands>
                <polymorphic_bands>172 89 72 66 62 59 45 45 33 31 29 28 26 22 20 20 17 16 16 15 12 11 10 10 10 9 9 8 8 8 7 6 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGGAATTTGTGTGGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>CATATTTTGGGACAATTGCTA</pcr_primer_p2>
		<pcr_amplicon_size>289</pcr_amplicon_size>
		<canonical_amplicon>TGGAATTTGTGTGGATTTTTCGGCTTCTGAAAATCATTCTGAAAATAAAATTTCAGAATTTTTTGAAATTCTGAAATCCCGGATTTCTGAATTCCCTGTGAAAACCCTCTGTGTTTCGGAAATTCGAAAAATTTGATTTTCAATTTTTTCGAGATTTTTCAAATTTCCGAATTCTCGTCGAATAATGAAAAATCTGGAATTGAGGATCTGGAAATTCTAGCAAAATTGAATTCCTGGAAATTTCTGGAAGTTTTGAATTTTGAAAAATTAGCAATTGTCCCAAAATATG</canonical_amplicon>
		<polymorphic_amplicon>TGGAATTTGTGTGGATTTTTCGGCTTCTGAAAATCATTCTGAAAATAAAATTTCAGAATTTTTTGAAAYTCTGAAATCCCGGATTTCTGAATTCCCTGTGAAAACCCTCTGTGTTTCGGAAATTCGAAAAATTTGATTTTCAATTTTTTCGAGATTTTTCAAATTTCCGAATTCTCGTCGAATAATGAAAAATCTGGAATTGAGGATCTGGAAATTCTAGCAAAATTGAATTCCTGGAAATTTCTGGAAGTTTTGAATTTTGAAAAATTAGCAATTGTCCCAAAATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38807</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>169093</contig_pos>
        <strand></strand>
        <context>aytctgaaat[C/G]ccggrtytct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGAAAATCATTCTGAAAATAAAATTTCAGAATTTTTTGAAATTCTGAAAT</left_flank>
        <right_flank>CCGGATTTCTGAATTCCCTGTGAAAACCCTCTGTGTTTCGGAAATTCGAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAGTTAGGACCTGTTAAAAATTAGGAAATTTTCGAACTTTGGCTTATTTAGGCTCATTTTGAAGCTCTAGACGCGGCAAAAAAGGGAGAATTAATTCCAAAAGCTAAAAAAAAAACAAAATTTCAGATTCCGTTTGCTGAGAACGTGTCGACATCTTAATGAGAATCTCCCTATCAAAATTCCAGTGATAATAATCATATTTTCCGGGAAAAATGTGCAAGTTTATCTCCAAAAAGAGCTGAAAATTCCTCCAGAATACACAAAAATCGAGTACGATACGTGTCACGATGTATACGGTACCTACATAGGCTGCAAAATTTGGGAATCTCGAAACTTCCAAAGACAAGGGCGCGGCAATCCCGGATTTTATGCTGCCAGATTTTTGAGACGACTGTTTTCCCGGAAATTTCTGGAAATTTCTGGAATTTGTGTGGATTTTTCGGCTTCTGAAAATCATTCTGAAAATAAAATTTCAGAATTTTTTGAAATTCTGAAATCCCGGATTTCTGAATTCCCTGTGAAAACCCTCTGTGTTTCGGAAATTCGAAAAATTTGATTTTCAATTTTTTCGAGATTTTTCAAATTTCCGAATTCTCGTCGAATAATGAAAAATCTGGAATTGAGGATCTGGAAATTCTAGCAAAATTGAATTCCTGGAAATTTCTGGAAGTTTTGAATTTTGAAAAATTAGCAATTGTCCCAAAATATGAGTCCAATTTCGCCCACTTGAAATCAATTACCCTCACTGTTGTACTACTTAACGTACCGGATTTGATCGAAATTAAAGAGGTGAGCAATTTTTTACTTAAAAAATTTGAATTTGGCGCGTTTAGTGCTTTAAAATGAGCCTAAACAAGCCAAAAAGCCAAACTTTTGAAGTCTCCGTTTTTTGACGGGTCCTAACTTTTCGTACAGTAACCCAAATGCCTCGAAACAGTGATTTTTGAACTTGGCGCATTAAGAGCTTTCAAATGAGTATAAACATGCCTAGATTTGGA</canonical>
            <polymorphic>AAGAGTTAGGACCTGTTAAAAATTAGGAAATTTTCGAACTTTGGCTTATTTAGGCTCATTTTGAAGCTCTAGACGCGGCAAAAAAGGGAGAATTAATTCCAAAAGCTAAAAAAAAAACAAAATTTCAGATTCCGTTTGCTGAGAACGTGTCGACATCTTAATGAGAATCTCCCTATCAAAATTCCAGTGATAATAATCATATTTTCCGGGAAAAATGTGCAAGTTTATCTCCAAAAAGAGCTGAAAATTCCTCCAGAATACACAAAAATCGAGTACGATACGTGTCACGATGTATACGGTACCTACATAGGCTGCAAAATTTGGGAATCTCGAAACTTCCAAAGACAAGGGCGCGGCAATCCCGGATTTTATGCTGCCAGATTTTTGAGACGACTGTTTTCCCGGAAATTTCTGGAAATTTCTGGAATTTGTGTGGATTTTTCGGCTTCTGAAAATCATTCTGAAAATAAAATTTCAGAATTTTTTGAAATTCTGAAATSCCGGATTTCTGAATTCCCTGTGAAAACCCTCTGTGTTTCGGAAATTCGAAAAATTTGATTTTCAATTTTTTCGAGATTTTTCAAATTTCCGAATTCTCGTCGAATAATGAAAAATCTGGAATTGAGGATCTGGAAATTCTAGCAAAATTGAATTCCTGGAAATTTCTGGAAGTTTTGAATTTTGAAAAATTAGCAATTGTCCCAAAATATGAGTCCAATTTCGCCCACTTGAAATCAATTACCCTCACTGTTGTACTACTTAACGTACCGGATTTGATCGAAATTAAAGAGGTGAGCAATTTTTTACTTAAAAAATTTGAATTTGGCGCGTTTAGTGCTTTAAAATGAGCCTAAACAAGCCAAAAAGCCAAACTTTTGAAGTCTCCGTTTTTTGACGGGTCCTAACTTTTCGTACAGTAACCCAAATGCCTCGAAACAGTGATTTTTGAACTTGGCGCATTAAGAGCTTTCAAATGAGTATAAACATGCCTAGATTTGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>499 207 155 99 40</canonical_bands>
                <polymorphic_bands>598 207 155 40</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>344 207 155 155 99 40</canonical_bands>
                <polymorphic_bands>344 254 207 155 40</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>346 205 155 155 99 40</canonical_bands>
                <polymorphic_bands>346 254 205 155 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCTTCTGAAAATCATTCTG</pcr_primer_p1>
		<pcr_primer_p2>CATATTTTGGGACAATTGCTA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>GGCTTCTGAAAATCATTCTGAAAATAAAATTTCAGAATTTTTTGAAATTCTGAAATCCCGGATTTCTGAATTCCCTGTGAAAACCCTCTGTGTTTCGGAAATTCGAAAAATTTGATTTTCAATTTTTTCGAGATTTTTCAAATTTCCGAATTCTCGTCGAATAATGAAAAATCTGGAATTGAGGATCTGGAAATTCTAGCAAAATTGAATTCCTGGAAATTTCTGGAAGTTTTGAATTTTGAAAAATTAGCAATTGTCCCAAAATATG</canonical_amplicon>
		<polymorphic_amplicon>GGCTTCTGAAAATCATTCTGAAAATAAAATTTCAGAATTTTTTGAAATTCTGAAATSCCGGATTTCTGAATTCCCTGTGAAAACCCTCTGTGTTTCGGAAATTCGAAAAATTTGATTTTCAATTTTTTCGAGATTTTTCAAATTTCCGAATTCTCGTCGAATAATGAAAAATCTGGAATTGAGGATCTGGAAATTCTAGCAAAATTGAATTCCTGGAAATTTCTGGAAGTTTTGAATTTTGAAAAATTAGCAATTGTCCCAAAATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38808</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>169098</contig_pos>
        <strand></strand>
        <context>gaaatsccgg[A/G]tytctgaatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCATTCTGAAAATAAAATTTCAGAATTTTTTGAAATTCTGAAATCCCGG</left_flank>
        <right_flank>TTTCTGAATTCCCTGTGAAAACCCTCTGTGTTTCGGAAATTCGAAAAATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAGGACCTGTTAAAAATTAGGAAATTTTCGAACTTTGGCTTATTTAGGCTCATTTTGAAGCTCTAGACGCGGCAAAAAAGGGAGAATTAATTCCAAAAGCTAAAAAAAAAACAAAATTTCAGATTCCGTTTGCTGAGAACGTGTCGACATCTTAATGAGAATCTCCCTATCAAAATTCCAGTGATAATAATCATATTTTCCGGGAAAAATGTGCAAGTTTATCTCCAAAAAGAGCTGAAAATTCCTCCAGAATACACAAAAATCGAGTACGATACGTGTCACGATGTATACGGTACCTACATAGGCTGCAAAATTTGGGAATCTCGAAACTTCCAAAGACAAGGGCGCGGCAATCCCGGATTTTATGCTGCCAGATTTTTGAGACGACTGTTTTCCCGGAAATTTCTGGAAATTTCTGGAATTTGTGTGGATTTTTCGGCTTCTGAAAATCATTCTGAAAATAAAATTTCAGAATTTTTTGAAATTCTGAAATCCCGGATTTCTGAATTCCCTGTGAAAACCCTCTGTGTTTCGGAAATTCGAAAAATTTGATTTTCAATTTTTTCGAGATTTTTCAAATTTCCGAATTCTCGTCGAATAATGAAAAATCTGGAATTGAGGATCTGGAAATTCTAGCAAAATTGAATTCCTGGAAATTTCTGGAAGTTTTGAATTTTGAAAAATTAGCAATTGTCCCAAAATATGAGTCCAATTTCGCCCACTTGAAATCAATTACCCTCACTGTTGTACTACTTAACGTACCGGATTTGATCGAAATTAAAGAGGTGAGCAATTTTTTACTTAAAAAATTTGAATTTGGCGCGTTTAGTGCTTTAAAATGAGCCTAAACAAGCCAAAAAGCCAAACTTTTGAAGTCTCCGTTTTTTGACGGGTCCTAACTTTTCGTACAGTAACCCAAATGCCTCGAAACAGTGATTTTTGAACTTGGCGCATTAAGAGCTTTCAAATGAGTATAAACATGCCTAGATTTGGAGAATT</canonical>
            <polymorphic>TTAGGACCTGTTAAAAATTAGGAAATTTTCGAACTTTGGCTTATTTAGGCTCATTTTGAAGCTCTAGACGCGGCAAAAAAGGGAGAATTAATTCCAAAAGCTAAAAAAAAAACAAAATTTCAGATTCCGTTTGCTGAGAACGTGTCGACATCTTAATGAGAATCTCCCTATCAAAATTCCAGTGATAATAATCATATTTTCCGGGAAAAATGTGCAAGTTTATCTCCAAAAAGAGCTGAAAATTCCTCCAGAATACACAAAAATCGAGTACGATACGTGTCACGATGTATACGGTACCTACATAGGCTGCAAAATTTGGGAATCTCGAAACTTCCAAAGACAAGGGCGCGGCAATCCCGGATTTTATGCTGCCAGATTTTTGAGACGACTGTTTTCCCGGAAATTTCTGGAAATTTCTGGAATTTGTGTGGATTTTTCGGCTTCTGAAAATCATTCTGAAAATAAAATTTCAGAATTTTTTGAAATTCTGAAATCCCGGRTTTCTGAATTCCCTGTGAAAACCCTCTGTGTTTCGGAAATTCGAAAAATTTGATTTTCAATTTTTTCGAGATTTTTCAAATTTCCGAATTCTCGTCGAATAATGAAAAATCTGGAATTGAGGATCTGGAAATTCTAGCAAAATTGAATTCCTGGAAATTTCTGGAAGTTTTGAATTTTGAAAAATTAGCAATTGTCCCAAAATATGAGTCCAATTTCGCCCACTTGAAATCAATTACCCTCACTGTTGTACTACTTAACGTACCGGATTTGATCGAAATTAAAGAGGTGAGCAATTTTTTACTTAAAAAATTTGAATTTGGCGCGTTTAGTGCTTTAAAATGAGCCTAAACAAGCCAAAAAGCCAAACTTTTGAAGTCTCCGTTTTTTGACGGGTCCTAACTTTTCGTACAGTAACCCAAATGCCTCGAAACAGTGATTTTTGAACTTGGCGCATTAAGAGCTTTCAAATGAGTATAAACATGCCTAGATTTGGAGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>351 200 155 155 99 40</canonical_bands>
                <polymorphic_bands>351 254 200 155 40</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCTTCTGAAAATCATTCTG</pcr_primer_p1>
		<pcr_primer_p2>CATATTTTGGGACAATTGCTA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>GGCTTCTGAAAATCATTCTGAAAATAAAATTTCAGAATTTTTTGAAATTCTGAAATCCCGGATTTCTGAATTCCCTGTGAAAACCCTCTGTGTTTCGGAAATTCGAAAAATTTGATTTTCAATTTTTTCGAGATTTTTCAAATTTCCGAATTCTCGTCGAATAATGAAAAATCTGGAATTGAGGATCTGGAAATTCTAGCAAAATTGAATTCCTGGAAATTTCTGGAAGTTTTGAATTTTGAAAAATTAGCAATTGTCCCAAAATATG</canonical_amplicon>
		<polymorphic_amplicon>GGCTTCTGAAAATCATTCTGAAAATAAAATTTCAGAATTTTTTGAAATTCTGAAATCCCGGRTTTCTGAATTCCCTGTGAAAACCCTCTGTGTTTCGGAAATTCGAAAAATTTGATTTTCAATTTTTTCGAGATTTTTCAAATTTCCGAATTCTCGTCGAATAATGAAAAATCTGGAATTGAGGATCTGGAAATTCTAGCAAAATTGAATTCCTGGAAATTTCTGGAAGTTTTGAATTTTGAAAAATTAGCAATTGTCCCAAAATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38809</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>169100</contig_pos>
        <strand></strand>
        <context>aatsccggrt[T/C]tctgaattcc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CATTCTGAAAATAAAATTTCAGAATTTTTTGAAATTCTGAAATCCCGGAT</left_flank>
        <right_flank>TCTGAATTCCCTGTGAAAACCCTCTGTGTTTCGGAAATTCGAAAAATTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGACCTGTTAAAAATTAGGAAATTTTCGAACTTTGGCTTATTTAGGCTCATTTTGAAGCTCTAGACGCGGCAAAAAAGGGAGAATTAATTCCAAAAGCTAAAAAAAAAACAAAATTTCAGATTCCGTTTGCTGAGAACGTGTCGACATCTTAATGAGAATCTCCCTATCAAAATTCCAGTGATAATAATCATATTTTCCGGGAAAAATGTGCAAGTTTATCTCCAAAAAGAGCTGAAAATTCCTCCAGAATACACAAAAATCGAGTACGATACGTGTCACGATGTATACGGTACCTACATAGGCTGCAAAATTTGGGAATCTCGAAACTTCCAAAGACAAGGGCGCGGCAATCCCGGATTTTATGCTGCCAGATTTTTGAGACGACTGTTTTCCCGGAAATTTCTGGAAATTTCTGGAATTTGTGTGGATTTTTCGGCTTCTGAAAATCATTCTGAAAATAAAATTTCAGAATTTTTTGAAATTCTGAAATCCCGGATTTCTGAATTCCCTGTGAAAACCCTCTGTGTTTCGGAAATTCGAAAAATTTGATTTTCAATTTTTTCGAGATTTTTCAAATTTCCGAATTCTCGTCGAATAATGAAAAATCTGGAATTGAGGATCTGGAAATTCTAGCAAAATTGAATTCCTGGAAATTTCTGGAAGTTTTGAATTTTGAAAAATTAGCAATTGTCCCAAAATATGAGTCCAATTTCGCCCACTTGAAATCAATTACCCTCACTGTTGTACTACTTAACGTACCGGATTTGATCGAAATTAAAGAGGTGAGCAATTTTTTACTTAAAAAATTTGAATTTGGCGCGTTTAGTGCTTTAAAATGAGCCTAAACAAGCCAAAAAGCCAAACTTTTGAAGTCTCCGTTTTTTGACGGGTCCTAACTTTTCGTACAGTAACCCAAATGCCTCGAAACAGTGATTTTTGAACTTGGCGCATTAAGAGCTTTCAAATGAGTATAAACATGCCTAGATTTGGAGAATTTC</canonical>
            <polymorphic>AGGACCTGTTAAAAATTAGGAAATTTTCGAACTTTGGCTTATTTAGGCTCATTTTGAAGCTCTAGACGCGGCAAAAAAGGGAGAATTAATTCCAAAAGCTAAAAAAAAAACAAAATTTCAGATTCCGTTTGCTGAGAACGTGTCGACATCTTAATGAGAATCTCCCTATCAAAATTCCAGTGATAATAATCATATTTTCCGGGAAAAATGTGCAAGTTTATCTCCAAAAAGAGCTGAAAATTCCTCCAGAATACACAAAAATCGAGTACGATACGTGTCACGATGTATACGGTACCTACATAGGCTGCAAAATTTGGGAATCTCGAAACTTCCAAAGACAAGGGCGCGGCAATCCCGGATTTTATGCTGCCAGATTTTTGAGACGACTGTTTTCCCGGAAATTTCTGGAAATTTCTGGAATTTGTGTGGATTTTTCGGCTTCTGAAAATCATTCTGAAAATAAAATTTCAGAATTTTTTGAAATTCTGAAATCCCGGATYTCTGAATTCCCTGTGAAAACCCTCTGTGTTTCGGAAATTCGAAAAATTTGATTTTCAATTTTTTCGAGATTTTTCAAATTTCCGAATTCTCGTCGAATAATGAAAAATCTGGAATTGAGGATCTGGAAATTCTAGCAAAATTGAATTCCTGGAAATTTCTGGAAGTTTTGAATTTTGAAAAATTAGCAATTGTCCCAAAATATGAGTCCAATTTCGCCCACTTGAAATCAATTACCCTCACTGTTGTACTACTTAACGTACCGGATTTGATCGAAATTAAAGAGGTGAGCAATTTTTTACTTAAAAAATTTGAATTTGGCGCGTTTAGTGCTTTAAAATGAGCCTAAACAAGCCAAAAAGCCAAACTTTTGAAGTCTCCGTTTTTTGACGGGTCCTAACTTTTCGTACAGTAACCCAAATGCCTCGAAACAGTGATTTTTGAACTTGGCGCATTAAGAGCTTTCAAATGAGTATAAACATGCCTAGATTTGGAGAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCTTCTGAAAATCATTCTG</pcr_primer_p1>
		<pcr_primer_p2>CATATTTTGGGACAATTGCTA</pcr_primer_p2>
		<pcr_amplicon_size>268</pcr_amplicon_size>
		<canonical_amplicon>GGCTTCTGAAAATCATTCTGAAAATAAAATTTCAGAATTTTTTGAAATTCTGAAATCCCGGATTTCTGAATTCCCTGTGAAAACCCTCTGTGTTTCGGAAATTCGAAAAATTTGATTTTCAATTTTTTCGAGATTTTTCAAATTTCCGAATTCTCGTCGAATAATGAAAAATCTGGAATTGAGGATCTGGAAATTCTAGCAAAATTGAATTCCTGGAAATTTCTGGAAGTTTTGAATTTTGAAAAATTAGCAATTGTCCCAAAATATG</canonical_amplicon>
		<polymorphic_amplicon>GGCTTCTGAAAATCATTCTGAAAATAAAATTTCAGAATTTTTTGAAATTCTGAAATCCCGGATYTCTGAATTCCCTGTGAAAACCCTCTGTGTTTCGGAAATTCGAAAAATTTGATTTTCAATTTTTTCGAGATTTTTCAAATTTCCGAATTCTCGTCGAATAATGAAAAATCTGGAATTGAGGATCTGGAAATTCTAGCAAAATTGAATTCCTGGAAATTTCTGGAAGTTTTGAATTTTGAAAAATTAGCAATTGTCCCAAAATATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38814</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>179987</contig_pos>
        <strand>+</strand>
        <context>ATTTTACGGG[A/G]GATTTTTGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGAAATTTGAGAATGTTTTAAAGGTGGGGGGGACAGGAGATTTTACGGG</left_flank>
        <right_flank>GATTTTTGTAGTTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAAGTTTTTAAATGATTTTTTTTTTCTGAATTTTTTTTTTCGAAAAAGCGACAGATTTATTATCATTTTTGATTGAATTGTTGTTGTCTGGAGTACTTTTTTTCTCTTAAAAAAATCTGGAGATTTATTGATGATGACGTATTGAGAAGTGTCTGAAAATTTGGAAATCTGAAAAAGGGAAAATGATCTTTGCAATAAGAAGAAACATAGAAAATATAAAATATTTCTGAATTTTTGAAATAATTCGTCAATTCGTAATAATTCGTCTTACAATAATTCGATAATTCGATAATTTTATTCGATAATTTTACAATAATTCGTCTTACAGGGTCACGTAAATCTATATTTATTTTTTTTTTCTTCAAAAGTTAACAGAGTGACATCGGGATGGACAAACGCCTCTTACGTTTTATATATATATATAAGGGAGATGCCTGCAACGTTTTTCAGAAATTTGAGAATGTTTTAAAGGTGGGGGGGACAGGAGATTTTACGGGAGATTTTTGTAGTTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGTGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGTGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGCATATTTAAACGATATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAATCGATTTTTTTTTCTAGTAATTAGGATTTCCAGTCTATCATACTTGTAATCCGGCCCTGCCATAACTTCCTTCAGAATCAATGTTTTCAAACCAACTCAATCAGGTATGATAGAGCTCTACGAGTACTACAAAACGGTATTATTTGGAATACTGTATCTTGTCTATGAACAGAGTTACGGAGCAAAAGGAAGAAGCCTGCCGGGTCCTGCGAGAAAAGCCACTTTATGATCTGTAACTTTGTTCATAGATAAGATA</canonical>
            <polymorphic>TTCAAGTTTTTAAATGATTTTTTTTTTCTGAATTTTTTTTTTCGAAAAAGCGACAGATTTATTATCATTTTTGATTGAATTGTTGTTGTCTGGAGTACTTTTTTTCTCTTAAAAAAATCTGGAGATTTATTGATGATGACGTATTGAGAAGTGTCTGAAAATTTGGAAATCTGAAAAAGGGAAAATGATCTTTGCAATAAGAAGAAACATAGAAAATATAAAATATTTCTGAATTTTTGAAATAATTCGTCAATTCGTAATAATTCGTCTTACAATAATTCGATAATTCGATAATTTTATTCGATAATTTTACAATAATTCGTCTTACAGGGTCACGTAAATCTATATTTATTTTTTTTTTCTTCAAAAGTTAACAGAGTGACATCGGGATGGACAAACGCCTCTTACGTTTTATATATATATATAAGGGAGATGCCTGCAACGTTTTTCAGAAATTTGAGAATGTTTTAAAGGTGGGGGGGACAGGAGATTTTACGGGRGATTTTTGTAGTTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGTGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGTGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGCATATTTAAACGATATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAATCGATTTTTTTTTCTAGTAATTAGGATTTCCAGTCTATCATACTTGTAATCCGGCCCTGCCATAACTTCCTTCAGAATCAATGTTTTCAAACCAACTCAATCAGGTATGATAGAGCTCTACGAGTACTACAAAACGGTATTATTTGGAATACTGTATCTTGTCTATGAACAGAGTTACGGAGCAAAAGGAAGAAGCCTGCCGGGTCCTGCGAGAAAAGCCACTTTATGATCTGTAACTTTGTTCATAGATAAGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCAGAAATTTGAGAATGTT</pcr_primer_p1>
		<pcr_primer_p2>CTCGAGGAGTTGAACTTGTG</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCAGAAATTTGAGAATGTTTTAAAGGTGGGGGGGACAGGAGATTTTACGGGAGATTTTTGTAGTTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGTGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGTGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCAGAAATTTGAGAATGTTTTAAAGGTGGGGGGGACAGGAGATTTTACGGGRGATTTTTGTAGTTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGTGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGTGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38815</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>179999</contig_pos>
        <strand>+</strand>
        <context>ATTTTTGTAG[C/T]TAGAGTATGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGTTTTAAAGGTGGGGGGGACAGGAGATTTTACGGGAGATTTTTGTAG</left_flank>
        <right_flank>TAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGATTTTTTTTTTCTGAATTTTTTTTTTCGAAAAAGCGACAGATTTATTATCATTTTTGATTGAATTGTTGTTGTCTGGAGTACTTTTTTTCTCTTAAAAAAATCTGGAGATTTATTGATGATGACGTATTGAGAAGTGTCTGAAAATTTGGAAATCTGAAAAAGGGAAAATGATCTTTGCAATAAGAAGAAACATAGAAAATATAAAATATTTCTGAATTTTTGAAATAATTCGTCAATTCGTAATAATTCGTCTTACAATAATTCGATAATTCGATAATTTTATTCGATAATTTTACAATAATTCGTCTTACAGGGTCACGTAAATCTATATTTATTTTTTTTTTCTTCAAAAGTTAACAGAGTGACATCGGGATGGACAAACGCCTCTTACGTTTTATATATATATATAAGGGAGATGCCTGCAACGTTTTTCAGAAATTTGAGAATGTTTTAAAGGTGGGGGGGACAGGAGATTTTACGGGAGATTTTTGTAGTTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGTGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGTGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGCATATTTAAACGATATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAATCGATTTTTTTTTCTAGTAATTAGGATTTCCAGTCTATCATACTTGTAATCCGGCCCTGCCATAACTTCCTTCAGAATCAATGTTTTCAAACCAACTCAATCAGGTATGATAGAGCTCTACGAGTACTACAAAACGGTATTATTTGGAATACTGTATCTTGTCTATGAACAGAGTTACGGAGCAAAAGGAAGAAGCCTGCCGGGTCCTGCGAGAAAAGCCACTTTATGATCTGTAACTTTGTTCATAGATAAGATACAGTATTCCAAA</canonical>
            <polymorphic>AATGATTTTTTTTTTCTGAATTTTTTTTTTCGAAAAAGCGACAGATTTATTATCATTTTTGATTGAATTGTTGTTGTCTGGAGTACTTTTTTTCTCTTAAAAAAATCTGGAGATTTATTGATGATGACGTATTGAGAAGTGTCTGAAAATTTGGAAATCTGAAAAAGGGAAAATGATCTTTGCAATAAGAAGAAACATAGAAAATATAAAATATTTCTGAATTTTTGAAATAATTCGTCAATTCGTAATAATTCGTCTTACAATAATTCGATAATTCGATAATTTTATTCGATAATTTTACAATAATTCGTCTTACAGGGTCACGTAAATCTATATTTATTTTTTTTTTCTTCAAAAGTTAACAGAGTGACATCGGGATGGACAAACGCCTCTTACGTTTTATATATATATATAAGGGAGATGCCTGCAACGTTTTTCAGAAATTTGAGAATGTTTTAAAGGTGGGGGGGACAGGAGATTTTACGGGAGATTTTTGTAGYTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGTGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGTGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGCATATTTAAACGATATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAATCGATTTTTTTTTCTAGTAATTAGGATTTCCAGTCTATCATACTTGTAATCCGGCCCTGCCATAACTTCCTTCAGAATCAATGTTTTCAAACCAACTCAATCAGGTATGATAGAGCTCTACGAGTACTACAAAACGGTATTATTTGGAATACTGTATCTTGTCTATGAACAGAGTTACGGAGCAAAAGGAAGAAGCCTGCCGGGTCCTGCGAGAAAAGCCACTTTATGATCTGTAACTTTGTTCATAGATAAGATACAGTATTCCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCAGAAATTTGAGAATGTT</pcr_primer_p1>
		<pcr_primer_p2>CTCGAGGAGTTGAACTTGTG</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCAGAAATTTGAGAATGTTTTAAAGGTGGGGGGGACAGGAGATTTTACGGGAGATTTTTGTAGTTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGTGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGTGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCAGAAATTTGAGAATGTTTTAAAGGTGGGGGGGACAGGAGATTTTACGGGAGATTTTTGTAGYTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGTGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGTGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38816</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>180126</contig_pos>
        <strand>+</strand>
        <context>CAGTCGGTAG[C/T]GGCGCCGCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAG</left_flank>
        <right_flank>GGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTATTGAGAAGTGTCTGAAAATTTGGAAATCTGAAAAAGGGAAAATGATCTTTGCAATAAGAAGAAACATAGAAAATATAAAATATTTCTGAATTTTTGAAATAATTCGTCAATTCGTAATAATTCGTCTTACAATAATTCGATAATTCGATAATTTTATTCGATAATTTTACAATAATTCGTCTTACAGGGTCACGTAAATCTATATTTATTTTTTTTTTCTTCAAAAGTTAACAGAGTGACATCGGGATGGACAAACGCCTCTTACGTTTTATATATATATATAAGGGAGATGCCTGCAACGTTTTTCAGAAATTTGAGAATGTTTTAAAGGTGGGGGGGACAGGAGATTTTACGGGAGATTTTTGTAGTTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGTGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGTGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGCATATTTAAACGATATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAATCGATTTTTTTTTCTAGTAATTAGGATTTCCAGTCTATCATACTTGTAATCCGGCCCTGCCATAACTTCCTTCAGAATCAATGTTTTCAAACCAACTCAATCAGGTATGATAGAGCTCTACGAGTACTACAAAACGGTATTATTTGGAATACTGTATCTTGTCTATGAACAGAGTTACGGAGCAAAAGGAAGAAGCCTGCCGGGTCCTGCGAGAAAAGCCACTTTATGATCTGTAACTTTGTTCATAGATAAGATACAGTATTCCAAATAATACTGTTTTGTAGAACTCGTAGAGCTCTATCATATCTAATTTAGTTGGTTCGAAAATATAGATTCTGAAAAGAATTATGGCAGGGCCCGCGAAGGTCCGGCAAAGGGTCGGATTACAAGTATGC</canonical>
            <polymorphic>CGTATTGAGAAGTGTCTGAAAATTTGGAAATCTGAAAAAGGGAAAATGATCTTTGCAATAAGAAGAAACATAGAAAATATAAAATATTTCTGAATTTTTGAAATAATTCGTCAATTCGTAATAATTCGTCTTACAATAATTCGATAATTCGATAATTTTATTCGATAATTTTACAATAATTCGTCTTACAGGGTCACGTAAATCTATATTTATTTTTTTTTTCTTCAAAAGTTAACAGAGTGACATCGGGATGGACAAACGCCTCTTACGTTTTATATATATATATAAGGGAGATGCCTGCAACGTTTTTCAGAAATTTGAGAATGTTTTAAAGGTGGGGGGGACAGGAGATTTTACGGGAGATTTTTGTAGTTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGTGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGYGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGCATATTTAAACGATATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAATCGATTTTTTTTTCTAGTAATTAGGATTTCCAGTCTATCATACTTGTAATCCGGCCCTGCCATAACTTCCTTCAGAATCAATGTTTTCAAACCAACTCAATCAGGTATGATAGAGCTCTACGAGTACTACAAAACGGTATTATTTGGAATACTGTATCTTGTCTATGAACAGAGTTACGGAGCAAAAGGAAGAAGCCTGCCGGGTCCTGCGAGAAAAGCCACTTTATGATCTGTAACTTTGTTCATAGATAAGATACAGTATTCCAAATAATACTGTTTTGTAGAACTCGTAGAGCTCTATCATATCTAATTTAGTTGGTTCGAAAATATAGATTCTGAAAAGAATTATGGCAGGGCCCGCGAAGGTCCGGCAAAGGGTCGGATTACAAGTATGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>230 182 174 95 68 58 46 41 21 19 17 15 14 8 7 5</canonical_bands>
                <polymorphic_bands>230 182 174 95 68 58 46 41 23 21 19 17 14 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGCTTAATGTCACTCTGTGTA</pcr_primer_p1>
		<pcr_primer_p2>CAAGTATGATAGACTGGAAATCCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACGCTTAATGTCACTCTGTGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGTGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGCATATTTAAACGATATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAATCGATTTTTTTTTCTAGTAATTAGGATTTCCAGTCTATCATACTTG</canonical_amplicon>
		<polymorphic_amplicon>ACGCTTAATGTCACTCTGTGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGYGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGCATATTTAAACGATATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAATCGATTTTTTTTTCTAGTAATTAGGATTTCCAGTCTATCATACTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38817</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>180199</contig_pos>
        <strand>+</strand>
        <context>ATTTCGAGAA[C/T]ATTATTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCTCACAAGTTCAACTCCTCGAGGGCATATTTAAACGATATTTCGAGAA</left_flank>
        <right_flank>ATTATTTTTTTCATGTCCCCCCACCTTTAAAATCGATTTTTTTTTCTAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATATAAAATATTTCTGAATTTTTGAAATAATTCGTCAATTCGTAATAATTCGTCTTACAATAATTCGATAATTCGATAATTTTATTCGATAATTTTACAATAATTCGTCTTACAGGGTCACGTAAATCTATATTTATTTTTTTTTTCTTCAAAAGTTAACAGAGTGACATCGGGATGGACAAACGCCTCTTACGTTTTATATATATATATAAGGGAGATGCCTGCAACGTTTTTCAGAAATTTGAGAATGTTTTAAAGGTGGGGGGGACAGGAGATTTTACGGGAGATTTTTGTAGTTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGTGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGTGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGCATATTTAAACGATATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAATCGATTTTTTTTTCTAGTAATTAGGATTTCCAGTCTATCATACTTGTAATCCGGCCCTGCCATAACTTCCTTCAGAATCAATGTTTTCAAACCAACTCAATCAGGTATGATAGAGCTCTACGAGTACTACAAAACGGTATTATTTGGAATACTGTATCTTGTCTATGAACAGAGTTACGGAGCAAAAGGAAGAAGCCTGCCGGGTCCTGCGAGAAAAGCCACTTTATGATCTGTAACTTTGTTCATAGATAAGATACAGTATTCCAAATAATACTGTTTTGTAGAACTCGTAGAGCTCTATCATATCTAATTTAGTTGGTTCGAAAATATAGATTCTGAAAAGAATTATGGCAGGGCCCGCGAAGGTCCGGCAAAGGGTCGGATTACAAGTATGCAGTCTATTACTGGTGAATCCCAAAAATCTGAAACTATTACAAATTCCAACTTTTTGATTATTTGGATATTTGA</canonical>
            <polymorphic>AAAATATAAAATATTTCTGAATTTTTGAAATAATTCGTCAATTCGTAATAATTCGTCTTACAATAATTCGATAATTCGATAATTTTATTCGATAATTTTACAATAATTCGTCTTACAGGGTCACGTAAATCTATATTTATTTTTTTTTTCTTCAAAAGTTAACAGAGTGACATCGGGATGGACAAACGCCTCTTACGTTTTATATATATATATAAGGGAGATGCCTGCAACGTTTTTCAGAAATTTGAGAATGTTTTAAAGGTGGGGGGGACAGGAGATTTTACGGGAGATTTTTGTAGTTAGAGTATGCATTCTACCGTCACGGTGTACAACGCTTAATGTCACTCTGTGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGTGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGCATATTTAAACGATATTTCGAGAAYATTATTTTTTTCATGTCCCCCCACCTTTAAAATCGATTTTTTTTTCTAGTAATTAGGATTTCCAGTCTATCATACTTGTAATCCGGCCCTGCCATAACTTCCTTCAGAATCAATGTTTTCAAACCAACTCAATCAGGTATGATAGAGCTCTACGAGTACTACAAAACGGTATTATTTGGAATACTGTATCTTGTCTATGAACAGAGTTACGGAGCAAAAGGAAGAAGCCTGCCGGGTCCTGCGAGAAAAGCCACTTTATGATCTGTAACTTTGTTCATAGATAAGATACAGTATTCCAAATAATACTGTTTTGTAGAACTCGTAGAGCTCTATCATATCTAATTTAGTTGGTTCGAAAATATAGATTCTGAAAAGAATTATGGCAGGGCCCGCGAAGGTCCGGCAAAGGGTCGGATTACAAGTATGCAGTCTATTACTGGTGAATCCCAAAAATCTGAAACTATTACAAATTCCAACTTTTTGATTATTTGGATATTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGCTTAATGTCACTCTGTGTA</pcr_primer_p1>
		<pcr_primer_p2>CAAGTATGATAGACTGGAAATCCT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACGCTTAATGTCACTCTGTGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGTGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGCATATTTAAACGATATTTCGAGAACATTATTTTTTTCATGTCCCCCCACCTTTAAAATCGATTTTTTTTTCTAGTAATTAGGATTTCCAGTCTATCATACTTG</canonical_amplicon>
		<polymorphic_amplicon>ACGCTTAATGTCACTCTGTGTACAGCTGTCGTCCTCGCCTTTATGTATGCAATCGGGCGTGCGCTTTCTCTTTGCCCGCGTGGCTCAGTCGGTAGTGGCGCCGCACCCTCAATCATCGCCCTCACAAGTTCAACTCCTCGAGGGCATATTTAAACGATATTTCGAGAAYATTATTTTTTTCATGTCCCCCCACCTTTAAAATCGATTTTTTTTTCTAGTAATTAGGATTTCCAGTCTATCATACTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38818</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>181750</contig_pos>
        <strand>+</strand>
        <context>GCGGGAAATT[A/C]AAAATTTCMA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCCCAAGGACCACACATTGTGATAATGTGAGTCTTTTAGGCGGGAAATT</left_flank>
        <right_flank>AAAATTTCAAAAATTTCAGATTTTAAAAAACGAGACAAAGTATTTATTGT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTTGAATTCGGATTTGAACTCAAAAAGTTACGGTAGCTTGAAAACTGAGATAATTTTTTTCAAAAAAACGTTTCTGGAACATTTTTTCAAACTACCGTAACTTTAACAATTTTCATCCGATATTGTGAAATTAGATATTTTTGAGTTTGACTTGTTTTGATAATTTCAAAACTGTCAAAATTTTTAAGTTCGGACTAGAACTCAAAAAGCTACGGTAGCTTGAAATTTTGAAAATTTTTAAATTTTCAAAAAAAAATCACAAGTTTCTATTTTCAGGATCAATGCACTGTATGTGGAGCCCAAAGTCAAAACTAGTCATTTTAATTGCAGGTAATTAAAATTTCCAATTTTTTCAAAAAAAAAAGTCATTAAAACTTTTTCCAGTTTCCCTAATAATTTCAATTATCTTCCTCACATGGTGCATTCTACCGTATGACTACAGTAATATCCCAAGGACCACACATTGTGATAATGTGAGTCTTTTAGGCGGGAAATTAAAAATTTCAAAAATTTCAGATTTTAAAAAACGAGACAAAGTATTTATTGTTCCCGATGTTTACGATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTGAAAATCAGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAATGGCTGAAAAATTGAATCGAACTGCAATTTTCAATAAAAGAGACTGGTTTTTGAATTTTCGATTAAAAAATGTGAGGGAGAAAATTCCGAAAATCGCGGAAAATGTGAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAA</canonical>
            <polymorphic>ATTTTTGAATTCGGATTTGAACTCAAAAAGTTACGGTAGCTTGAAAACTGAGATAATTTTTTTCAAAAAAACGTTTCTGGAACATTTTTTCAAACTACCGTAACTTTAACAATTTTCATCCGATATTGTGAAATTAGATATTTTTGAGTTTGACTTGTTTTGATAATTTCAAAACTGTCAAAATTTTTAAGTTCGGACTAGAACTCAAAAAGCTACGGTAGCTTGAAATTTTGAAAATTTTTAAATTTTCAAAAAAAAATCACAAGTTTCTATTTTCAGGATCAATGCACTGTATGTGGAGCCCAAAGTCAAAACTAGTCATTTTAATTGCAGGTAATTAAAATTTCCAATTTTTTCAAAAAAAAAAGTCATTAAAACTTTTTCCAGTTTCCCTAATAATTTCAATTATCTTCCTCACATGGTGCATTCTACCGTATGACTACAGTAATATCCCAAGGACCACACATTGTGATAATGTGAGTCTTTTAGGCGGGAAATTMAAAATTTCAAAAATTTCAGATTTTAAAAAACGAGACAAAGTATTTATTGTTCCCGATGTTTACGATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTGAAAATCAGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAATGGCTGAAAAATTGAATCGAACTGCAATTTTCAATAAAAGAGACTGGTTTTTGAATTTTCGATTAAAAAATGTGAGGGAGAAAATTCCGAAAATCGCGGAAAATGTGAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>184 140 126 106 88 83 81 54 52 34 25 14 7 6</canonical_bands>
                <polymorphic_bands>184 151 140 106 88 83 81 54 52 34 14 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACTAGTCATTTTAATTGCAGGT</pcr_primer_p1>
		<pcr_primer_p2>TAAACATCGGGAACAATAAATAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAACTAGTCATTTTAATTGCAGGTAATTAAAATTTCCAATTTTTTCAAAAAAAAAAGTCATTAAAACTTTTTCCAGTTTCCCTAATAATTTCAATTATCTTCCTCACATGGTGCATTCTACCGTATGACTACAGTAATATCCCAAGGACCACACATTGTGATAATGTGAGTCTTTTAGGCGGGAAATTAAAAATTTCAAAAATTTCAGATTTTAAAAAACGAGACAAAGTATTTATTGTTCCCGATGTTTA</canonical_amplicon>
		<polymorphic_amplicon>AAACTAGTCATTTTAATTGCAGGTAATTAAAATTTCCAATTTTTTCAAAAAAAAAAGTCATTAAAACTTTTTCCAGTTTCCCTAATAATTTCAATTATCTTCCTCACATGGTGCATTCTACCGTATGACTACAGTAATATCCCAAGGACCACACATTGTGATAATGTGAGTCTTTTAGGCGGGAAATTMAAAATTTCAAAAATTTCAGATTTTAAAAAACGAGACAAAGTATTTATTGTTCCCGATGTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38819</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>181759</contig_pos>
        <strand>+</strand>
        <context>TMAAAATTTC[A/C]AAAATTTCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACCACACATTGTGATAATGTGAGTCTTTTAGGCGGGAAATTAAAAATTTC</left_flank>
        <right_flank>AAAATTTCAGATTTTAAAAAACGAGACAAAGTATTTATTGTTCCCGATGT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGGATTTGAACTCAAAAAGTTACGGTAGCTTGAAAACTGAGATAATTTTTTTCAAAAAAACGTTTCTGGAACATTTTTTCAAACTACCGTAACTTTAACAATTTTCATCCGATATTGTGAAATTAGATATTTTTGAGTTTGACTTGTTTTGATAATTTCAAAACTGTCAAAATTTTTAAGTTCGGACTAGAACTCAAAAAGCTACGGTAGCTTGAAATTTTGAAAATTTTTAAATTTTCAAAAAAAAATCACAAGTTTCTATTTTCAGGATCAATGCACTGTATGTGGAGCCCAAAGTCAAAACTAGTCATTTTAATTGCAGGTAATTAAAATTTCCAATTTTTTCAAAAAAAAAAGTCATTAAAACTTTTTCCAGTTTCCCTAATAATTTCAATTATCTTCCTCACATGGTGCATTCTACCGTATGACTACAGTAATATCCCAAGGACCACACATTGTGATAATGTGAGTCTTTTAGGCGGGAAATTAAAAATTTCAAAAATTTCAGATTTTAAAAAACGAGACAAAGTATTTATTGTTCCCGATGTTTACGATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTGAAAATCAGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAATGGCTGAAAAATTGAATCGAACTGCAATTTTCAATAAAAGAGACTGGTTTTTGAATTTTCGATTAAAAAATGTGAGGGAGAAAATTCCGAAAATCGCGGAAAATGTGAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAATTTCAGA</canonical>
            <polymorphic>TTCGGATTTGAACTCAAAAAGTTACGGTAGCTTGAAAACTGAGATAATTTTTTTCAAAAAAACGTTTCTGGAACATTTTTTCAAACTACCGTAACTTTAACAATTTTCATCCGATATTGTGAAATTAGATATTTTTGAGTTTGACTTGTTTTGATAATTTCAAAACTGTCAAAATTTTTAAGTTCGGACTAGAACTCAAAAAGCTACGGTAGCTTGAAATTTTGAAAATTTTTAAATTTTCAAAAAAAAATCACAAGTTTCTATTTTCAGGATCAATGCACTGTATGTGGAGCCCAAAGTCAAAACTAGTCATTTTAATTGCAGGTAATTAAAATTTCCAATTTTTTCAAAAAAAAAAGTCATTAAAACTTTTTCCAGTTTCCCTAATAATTTCAATTATCTTCCTCACATGGTGCATTCTACCGTATGACTACAGTAATATCCCAAGGACCACACATTGTGATAATGTGAGTCTTTTAGGCGGGAAATTAAAAATTTCMAAAATTTCAGATTTTAAAAAACGAGACAAAGTATTTATTGTTCCCGATGTTTACGATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTGAAAATCAGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAATGGCTGAAAAATTGAATCGAACTGCAATTTTCAATAAAAGAGACTGGTTTTTGAATTTTCGATTAAAAAATGTGAGGGAGAAAATTCCGAAAATCGCGGAAAATGTGAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAATTTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACTAGTCATTTTAATTGCAGGT</pcr_primer_p1>
		<pcr_primer_p2>GTAAACATCGGGAACAATAAATA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AAACTAGTCATTTTAATTGCAGGTAATTAAAATTTCCAATTTTTTCAAAAAAAAAAGTCATTAAAACTTTTTCCAGTTTCCCTAATAATTTCAATTATCTTCCTCACATGGTGCATTCTACCGTATGACTACAGTAATATCCCAAGGACCACACATTGTGATAATGTGAGTCTTTTAGGCGGGAAATTAAAAATTTCAAAAATTTCAGATTTTAAAAAACGAGACAAAGTATTTATTGTTCCCGATGTTTAC</canonical_amplicon>
		<polymorphic_amplicon>AAACTAGTCATTTTAATTGCAGGTAATTAAAATTTCCAATTTTTTCAAAAAAAAAAGTCATTAAAACTTTTTCCAGTTTCCCTAATAATTTCAATTATCTTCCTCACATGGTGCATTCTACCGTATGACTACAGTAATATCCCAAGGACCACACATTGTGATAATGTGAGTCTTTTAGGCGGGAAATTAAAAATTTCMAAAATTTCAGATTTTAAAAAACGAGACAAAGTATTTATTGTTCCCGATGTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38820</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>181781</contig_pos>
        <strand>+</strand>
        <context>TTTTAAAAAA[C/T]GAGACAAAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTCTTTTAGGCGGGAAATTAAAAATTTCAAAAATTTCAGATTTTAAAAAA</left_flank>
        <right_flank>GAGACAAAGTATTTATTGTTCCCGATGTTTACGATAATCAGTGGGAGTGG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACGGTAGCTTGAAAACTGAGATAATTTTTTTCAAAAAAACGTTTCTGGAACATTTTTTCAAACTACCGTAACTTTAACAATTTTCATCCGATATTGTGAAATTAGATATTTTTGAGTTTGACTTGTTTTGATAATTTCAAAACTGTCAAAATTTTTAAGTTCGGACTAGAACTCAAAAAGCTACGGTAGCTTGAAATTTTGAAAATTTTTAAATTTTCAAAAAAAAATCACAAGTTTCTATTTTCAGGATCAATGCACTGTATGTGGAGCCCAAAGTCAAAACTAGTCATTTTAATTGCAGGTAATTAAAATTTCCAATTTTTTCAAAAAAAAAAGTCATTAAAACTTTTTCCAGTTTCCCTAATAATTTCAATTATCTTCCTCACATGGTGCATTCTACCGTATGACTACAGTAATATCCCAAGGACCACACATTGTGATAATGTGAGTCTTTTAGGCGGGAAATTAAAAATTTCAAAAATTTCAGATTTTAAAAAACGAGACAAAGTATTTATTGTTCCCGATGTTTACGATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTGAAAATCAGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAATGGCTGAAAAATTGAATCGAACTGCAATTTTCAATAAAAGAGACTGGTTTTTGAATTTTCGATTAAAAAATGTGAGGGAGAAAATTCCGAAAATCGCGGAAAATGTGAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAATTTCAGATTTGTCGGAATTTTAAAAATAC</canonical>
            <polymorphic>TACGGTAGCTTGAAAACTGAGATAATTTTTTTCAAAAAAACGTTTCTGGAACATTTTTTCAAACTACCGTAACTTTAACAATTTTCATCCGATATTGTGAAATTAGATATTTTTGAGTTTGACTTGTTTTGATAATTTCAAAACTGTCAAAATTTTTAAGTTCGGACTAGAACTCAAAAAGCTACGGTAGCTTGAAATTTTGAAAATTTTTAAATTTTCAAAAAAAAATCACAAGTTTCTATTTTCAGGATCAATGCACTGTATGTGGAGCCCAAAGTCAAAACTAGTCATTTTAATTGCAGGTAATTAAAATTTCCAATTTTTTCAAAAAAAAAAGTCATTAAAACTTTTTCCAGTTTCCCTAATAATTTCAATTATCTTCCTCACATGGTGCATTCTACCGTATGACTACAGTAATATCCCAAGGACCACACATTGTGATAATGTGAGTCTTTTAGGCGGGAAATTAAAAATTTCAAAAATTTCAGATTTTAAAAAAYGAGACAAAGTATTTATTGTTCCCGATGTTTACGATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTGAAAATCAGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAATGGCTGAAAAATTGAATCGAACTGCAATTTTCAATAAAAGAGACTGGTTTTTGAATTTTCGATTAAAAAATGTGAGGGAGAAAATTCCGAAAATCGCGGAAAATGTGAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAATTTCAGATTTGTCGGAATTTTAAAAATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAATTATCTTCCTCACATGGT</pcr_primer_p1>
		<pcr_primer_p2>GGATTTTTGGAATCCTAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCAATTATCTTCCTCACATGGTGCATTCTACCGTATGACTACAGTAATATCCCAAGGACCACACATTGTGATAATGTGAGTCTTTTAGGCGGGAAATTAAAAATTTCAAAAATTTCAGATTTTAAAAAACGAGACAAAGTATTTATTGTTCCCGATGTTTACGATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCC</canonical_amplicon>
		<polymorphic_amplicon>TCAATTATCTTCCTCACATGGTGCATTCTACCGTATGACTACAGTAATATCCCAAGGACCACACATTGTGATAATGTGAGTCTTTTAGGCGGGAAATTAAAAATTTCAAAAATTTCAGATTTTAAAAAAYGAGACAAAGTATTTATTGTTCCCGATGTTTACGATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38821</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>181814</contig_pos>
        <strand>+</strand>
        <context>CGATGTTTAC[A/G]ATAATCAGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTCAGATTTTAAAAAACGAGACAAAGTATTTATTGTTCCCGATGTTTAC</left_flank>
        <right_flank>ATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAACGTTTCTGGAACATTTTTTCAAACTACCGTAACTTTAACAATTTTCATCCGATATTGTGAAATTAGATATTTTTGAGTTTGACTTGTTTTGATAATTTCAAAACTGTCAAAATTTTTAAGTTCGGACTAGAACTCAAAAAGCTACGGTAGCTTGAAATTTTGAAAATTTTTAAATTTTCAAAAAAAAATCACAAGTTTCTATTTTCAGGATCAATGCACTGTATGTGGAGCCCAAAGTCAAAACTAGTCATTTTAATTGCAGGTAATTAAAATTTCCAATTTTTTCAAAAAAAAAAGTCATTAAAACTTTTTCCAGTTTCCCTAATAATTTCAATTATCTTCCTCACATGGTGCATTCTACCGTATGACTACAGTAATATCCCAAGGACCACACATTGTGATAATGTGAGTCTTTTAGGCGGGAAATTAAAAATTTCAAAAATTTCAGATTTTAAAAAACGAGACAAAGTATTTATTGTTCCCGATGTTTACGATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTGAAAATCAGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAATGGCTGAAAAATTGAATCGAACTGCAATTTTCAATAAAAGAGACTGGTTTTTGAATTTTCGATTAAAAAATGTGAGGGAGAAAATTCCGAAAATCGCGGAAAATGTGAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAATTTCAGATTTGTCGGAATTTTAAAAATACAGAAATTCAACATTTTTGAAAAATTCAGACTAT</canonical>
            <polymorphic>AAAAAAACGTTTCTGGAACATTTTTTCAAACTACCGTAACTTTAACAATTTTCATCCGATATTGTGAAATTAGATATTTTTGAGTTTGACTTGTTTTGATAATTTCAAAACTGTCAAAATTTTTAAGTTCGGACTAGAACTCAAAAAGCTACGGTAGCTTGAAATTTTGAAAATTTTTAAATTTTCAAAAAAAAATCACAAGTTTCTATTTTCAGGATCAATGCACTGTATGTGGAGCCCAAAGTCAAAACTAGTCATTTTAATTGCAGGTAATTAAAATTTCCAATTTTTTCAAAAAAAAAAGTCATTAAAACTTTTTCCAGTTTCCCTAATAATTTCAATTATCTTCCTCACATGGTGCATTCTACCGTATGACTACAGTAATATCCCAAGGACCACACATTGTGATAATGTGAGTCTTTTAGGCGGGAAATTAAAAATTTCAAAAATTTCAGATTTTAAAAAACGAGACAAAGTATTTATTGTTCCCGATGTTTACRATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTGAAAATCAGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAATGGCTGAAAAATTGAATCGAACTGCAATTTTCAATAAAAGAGACTGGTTTTTGAATTTTCGATTAAAAAATGTGAGGGAGAAAATTCCGAAAATCGCGGAAAATGTGAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAATTTCAGATTTGTCGGAATTTTAAAAATACAGAAATTCAACATTTTTGAAAAATTCAGACTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAATTATCTTCCTCACATGGT</pcr_primer_p1>
		<pcr_primer_p2>GGATTTTTGGAATCCTAATTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCAATTATCTTCCTCACATGGTGCATTCTACCGTATGACTACAGTAATATCCCAAGGACCACACATTGTGATAATGTGAGTCTTTTAGGCGGGAAATTAAAAATTTCAAAAATTTCAGATTTTAAAAAACGAGACAAAGTATTTATTGTTCCCGATGTTTACGATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCC</canonical_amplicon>
		<polymorphic_amplicon>TCAATTATCTTCCTCACATGGTGCATTCTACCGTATGACTACAGTAATATCCCAAGGACCACACATTGTGATAATGTGAGTCTTTTAGGCGGGAAATTAAAAATTTCAAAAATTTCAGATTTTAAAAAACGAGACAAAGTATTTATTGTTCCCGATGTTTACRATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38822</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>181909</contig_pos>
        <strand>+</strand>
        <context>CAAGAATTCT[G/T]AAAATCRGCA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCT</left_flank>
        <right_flank>AAAATCAGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGATAATTTCAAAACTGTCAAAATTTTTAAGTTCGGACTAGAACTCAAAAAGCTACGGTAGCTTGAAATTTTGAAAATTTTTAAATTTTCAAAAAAAAATCACAAGTTTCTATTTTCAGGATCAATGCACTGTATGTGGAGCCCAAAGTCAAAACTAGTCATTTTAATTGCAGGTAATTAAAATTTCCAATTTTTTCAAAAAAAAAAGTCATTAAAACTTTTTCCAGTTTCCCTAATAATTTCAATTATCTTCCTCACATGGTGCATTCTACCGTATGACTACAGTAATATCCCAAGGACCACACATTGTGATAATGTGAGTCTTTTAGGCGGGAAATTAAAAATTTCAAAAATTTCAGATTTTAAAAAACGAGACAAAGTATTTATTGTTCCCGATGTTTACGATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTGAAAATCAGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAATGGCTGAAAAATTGAATCGAACTGCAATTTTCAATAAAAGAGACTGGTTTTTGAATTTTCGATTAAAAAATGTGAGGGAGAAAATTCCGAAAATCGCGGAAAATGTGAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAATTTCAGATTTGTCGGAATTTTAAAAATACAGAAATTCAACATTTTTGAAAAATTCAGACTATCGTAACTTTTTGAGTTCTAGTCCGAACTTAAAAATTTTGACAGTTTTGAAATTATCAAAACAAGTCAAACTCAAAAATATCTAATTTTACAATAT</canonical>
            <polymorphic>TTGATAATTTCAAAACTGTCAAAATTTTTAAGTTCGGACTAGAACTCAAAAAGCTACGGTAGCTTGAAATTTTGAAAATTTTTAAATTTTCAAAAAAAAATCACAAGTTTCTATTTTCAGGATCAATGCACTGTATGTGGAGCCCAAAGTCAAAACTAGTCATTTTAATTGCAGGTAATTAAAATTTCCAATTTTTTCAAAAAAAAAAGTCATTAAAACTTTTTCCAGTTTCCCTAATAATTTCAATTATCTTCCTCACATGGTGCATTCTACCGTATGACTACAGTAATATCCCAAGGACCACACATTGTGATAATGTGAGTCTTTTAGGCGGGAAATTAAAAATTTCAAAAATTTCAGATTTTAAAAAACGAGACAAAGTATTTATTGTTCCCGATGTTTACGATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTKAAAATCAGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAATGGCTGAAAAATTGAATCGAACTGCAATTTTCAATAAAAGAGACTGGTTTTTGAATTTTCGATTAAAAAATGTGAGGGAGAAAATTCCGAAAATCGCGGAAAATGTGAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAATTTCAGATTTGTCGGAATTTTAAAAATACAGAAATTCAACATTTTTGAAAAATTCAGACTATCGTAACTTTTTGAGTTCTAGTCCGAACTTAAAAATTTTGACAGTTTTGAAATTATCAAAACAAGTCAAACTCAAAAATATCTAATTTTACAATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>323 214 140 135 72 42 36 29 9</canonical_bands>
                <polymorphic_bands>354 323 135 72 42 36 29 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTTATTGTTCCCGATGTTTAC</pcr_primer_p1>
		<pcr_primer_p2>ATTCCAAGAAGCGAGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TATTTATTGTTCCCGATGTTTACGATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTGAAAATCAGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAAT</canonical_amplicon>
		<polymorphic_amplicon>TATTTATTGTTCCCGATGTTTACGATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTKAAAATCAGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38823</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>181916</contig_pos>
        <strand>+</strand>
        <context>TCTKAAAATC[A/G]GCAAAAACTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTGAAAATC</left_flank>
        <right_flank>GCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAAAACTGTCAAAATTTTTAAGTTCGGACTAGAACTCAAAAAGCTACGGTAGCTTGAAATTTTGAAAATTTTTAAATTTTCAAAAAAAAATCACAAGTTTCTATTTTCAGGATCAATGCACTGTATGTGGAGCCCAAAGTCAAAACTAGTCATTTTAATTGCAGGTAATTAAAATTTCCAATTTTTTCAAAAAAAAAAGTCATTAAAACTTTTTCCAGTTTCCCTAATAATTTCAATTATCTTCCTCACATGGTGCATTCTACCGTATGACTACAGTAATATCCCAAGGACCACACATTGTGATAATGTGAGTCTTTTAGGCGGGAAATTAAAAATTTCAAAAATTTCAGATTTTAAAAAACGAGACAAAGTATTTATTGTTCCCGATGTTTACGATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTGAAAATCAGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAATGGCTGAAAAATTGAATCGAACTGCAATTTTCAATAAAAGAGACTGGTTTTTGAATTTTCGATTAAAAAATGTGAGGGAGAAAATTCCGAAAATCGCGGAAAATGTGAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAATTTCAGATTTGTCGGAATTTTAAAAATACAGAAATTCAACATTTTTGAAAAATTCAGACTATCGTAACTTTTTGAGTTCTAGTCCGAACTTAAAAATTTTGACAGTTTTGAAATTATCAAAACAAGTCAAACTCAAAAATATCTAATTTTACAATATCGGATGA</canonical>
            <polymorphic>TTTCAAAACTGTCAAAATTTTTAAGTTCGGACTAGAACTCAAAAAGCTACGGTAGCTTGAAATTTTGAAAATTTTTAAATTTTCAAAAAAAAATCACAAGTTTCTATTTTCAGGATCAATGCACTGTATGTGGAGCCCAAAGTCAAAACTAGTCATTTTAATTGCAGGTAATTAAAATTTCCAATTTTTTCAAAAAAAAAAGTCATTAAAACTTTTTCCAGTTTCCCTAATAATTTCAATTATCTTCCTCACATGGTGCATTCTACCGTATGACTACAGTAATATCCCAAGGACCACACATTGTGATAATGTGAGTCTTTTAGGCGGGAAATTAAAAATTTCAAAAATTTCAGATTTTAAAAAACGAGACAAAGTATTTATTGTTCCCGATGTTTACGATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTGAAAATCRGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAATGGCTGAAAAATTGAATCGAACTGCAATTTTCAATAAAAGAGACTGGTTTTTGAATTTTCGATTAAAAAATGTGAGGGAGAAAATTCCGAAAATCGCGGAAAATGTGAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAATTTCAGATTTGTCGGAATTTTAAAAATACAGAAATTCAACATTTTTGAAAAATTCAGACTATCGTAACTTTTTGAGTTCTAGTCCGAACTTAAAAATTTTGACAGTTTTGAAATTATCAAAACAAGTCAAACTCAAAAATATCTAATTTTACAATATCGGATGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTATTGTTCCCGATGTTTAC</pcr_primer_p1>
		<pcr_primer_p2>ATTCCAAGAAGCGAGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TATTTATTGTTCCCGATGTTTACGATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTGAAAATCAGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAAT</canonical_amplicon>
		<polymorphic_amplicon>TATTTATTGTTCCCGATGTTTACGATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTGAAAATCRGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38824</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>181964</contig_pos>
        <strand>+</strand>
        <context>AAGTTAACAA[A/C]TTTTTTCGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCAGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAA</left_flank>
        <right_flank>TTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGGTAGCTTGAAATTTTGAAAATTTTTAAATTTTCAAAAAAAAATCACAAGTTTCTATTTTCAGGATCAATGCACTGTATGTGGAGCCCAAAGTCAAAACTAGTCATTTTAATTGCAGGTAATTAAAATTTCCAATTTTTTCAAAAAAAAAAGTCATTAAAACTTTTTCCAGTTTCCCTAATAATTTCAATTATCTTCCTCACATGGTGCATTCTACCGTATGACTACAGTAATATCCCAAGGACCACACATTGTGATAATGTGAGTCTTTTAGGCGGGAAATTAAAAATTTCAAAAATTTCAGATTTTAAAAAACGAGACAAAGTATTTATTGTTCCCGATGTTTACGATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTGAAAATCAGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAATGGCTGAAAAATTGAATCGAACTGCAATTTTCAATAAAAGAGACTGGTTTTTGAATTTTCGATTAAAAAATGTGAGGGAGAAAATTCCGAAAATCGCGGAAAATGTGAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAATTTCAGATTTGTCGGAATTTTAAAAATACAGAAATTCAACATTTTTGAAAAATTCAGACTATCGTAACTTTTTGAGTTCTAGTCCGAACTTAAAAATTTTGACAGTTTTGAAATTATCAAAACAAGTCAAACTCAAAAATATCTAATTTTACAATATCGGATGAAAATTGTTAAAGTTACGGTAGTTTGAAAAAATGTTCCAGAAACGTTTT</canonical>
            <polymorphic>ACGGTAGCTTGAAATTTTGAAAATTTTTAAATTTTCAAAAAAAAATCACAAGTTTCTATTTTCAGGATCAATGCACTGTATGTGGAGCCCAAAGTCAAAACTAGTCATTTTAATTGCAGGTAATTAAAATTTCCAATTTTTTCAAAAAAAAAAGTCATTAAAACTTTTTCCAGTTTCCCTAATAATTTCAATTATCTTCCTCACATGGTGCATTCTACCGTATGACTACAGTAATATCCCAAGGACCACACATTGTGATAATGTGAGTCTTTTAGGCGGGAAATTAAAAATTTCAAAAATTTCAGATTTTAAAAAACGAGACAAAGTATTTATTGTTCCCGATGTTTACGATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTGAAAATCAGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAAMTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAATGGCTGAAAAATTGAATCGAACTGCAATTTTCAATAAAAGAGACTGGTTTTTGAATTTTCGATTAAAAAATGTGAGGGAGAAAATTCCGAAAATCGCGGAAAATGTGAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAATTTCAGATTTGTCGGAATTTTAAAAATACAGAAATTCAACATTTTTGAAAAATTCAGACTATCGTAACTTTTTGAGTTCTAGTCCGAACTTAAAAATTTTGACAGTTTTGAAATTATCAAAACAAGTCAAACTCAAAAATATCTAATTTTACAATATCGGATGAAAATTGTTAAAGTTACGGTAGTTTGAAAAAATGTTCCAGAAACGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTTATTGTTCCCGATGTTTAC</pcr_primer_p1>
		<pcr_primer_p2>ATTCCAAGAAGCGAGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TATTTATTGTTCCCGATGTTTACGATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTGAAAATCAGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAAT</canonical_amplicon>
		<polymorphic_amplicon>TATTTATTGTTCCCGATGTTTACGATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTGAAAATCAGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAAMTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38825</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>182046</contig_pos>
        <strand>+</strand>
        <context>GGCTGAAAAA[A/T]TGAATCGAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAATGGCTGAAAAA</left_flank>
        <right_flank>TGAATCGAACTGCAATTTTCAATAAAAGAGACTGGTTTTTGAATTTTCGA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAGCCCAAAGTCAAAACTAGTCATTTTAATTGCAGGTAATTAAAATTTCCAATTTTTTCAAAAAAAAAAGTCATTAAAACTTTTTCCAGTTTCCCTAATAATTTCAATTATCTTCCTCACATGGTGCATTCTACCGTATGACTACAGTAATATCCCAAGGACCACACATTGTGATAATGTGAGTCTTTTAGGCGGGAAATTAAAAATTTCAAAAATTTCAGATTTTAAAAAACGAGACAAAGTATTTATTGTTCCCGATGTTTACGATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTGAAAATCAGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAATGGCTGAAAAATTGAATCGAACTGCAATTTTCAATAAAAGAGACTGGTTTTTGAATTTTCGATTAAAAAATGTGAGGGAGAAAATTCCGAAAATCGCGGAAAATGTGAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAATTTCAGATTTGTCGGAATTTTAAAAATACAGAAATTCAACATTTTTGAAAAATTCAGACTATCGTAACTTTTTGAGTTCTAGTCCGAACTTAAAAATTTTGACAGTTTTGAAATTATCAAAACAAGTCAAACTCAAAAATATCTAATTTTACAATATCGGATGAAAATTGTTAAAGTTACGGTAGTTTGAAAAAATGTTCCAGAAACGTTTTTTTGAAAAAAATTATCTCAGTTTTCAAGCTACCGTAACTTTTTGAGTTCAAATCCGAATTCAAAAATTTGAACAGTTTTGAG</canonical>
            <polymorphic>TGGAGCCCAAAGTCAAAACTAGTCATTTTAATTGCAGGTAATTAAAATTTCCAATTTTTTCAAAAAAAAAAGTCATTAAAACTTTTTCCAGTTTCCCTAATAATTTCAATTATCTTCCTCACATGGTGCATTCTACCGTATGACTACAGTAATATCCCAAGGACCACACATTGTGATAATGTGAGTCTTTTAGGCGGGAAATTAAAAATTTCAAAAATTTCAGATTTTAAAAAACGAGACAAAGTATTTATTGTTCCCGATGTTTACGATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTGAAAATCAGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAATGGCTGAAAAAWTGAATCGAACTGCAATTTTCAATAAAAGAGACTGGTTTTTGAATTTTCGATTAAAAAATGTGAGGGAGAAAATTCCGAAAATCGCGGAAAATGTGAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAATTTCAGATTTGTCGGAATTTTAAAAATACAGAAATTCAACATTTTTGAAAAATTCAGACTATCGTAACTTTTTGAGTTCTAGTCCGAACTTAAAAATTTTGACAGTTTTGAAATTATCAAAACAAGTCAAACTCAAAAATATCTAATTTTACAATATCGGATGAAAATTGTTAAAGTTACGGTAGTTTGAAAAAATGTTCCAGAAACGTTTTTTTGAAAAAAATTATCTCAGTTTTCAAGCTACCGTAACTTTTTGAGTTCAAATCCGAATTCAAAAATTTGAACAGTTTTGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>92 82 71 65 56 49 47 44 33 29 29 29 28 25 23 21 20 18 18 17 17 17 17 16 16 14 13 11 10 10 9 9 8 7 7 6 6 6 5</canonical_bands>
                <polymorphic_bands>92 82 71 65 56 49 47 45 44 33 29 29 28 25 23 21 20 18 18 17 17 17 17 16 14 13 11 10 10 9 9 8 7 7 6 6 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAGTTATGATGTTTTGAAGAAA</pcr_primer_p1>
		<pcr_primer_p2>AATATCCATCGATCTCACATTT</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>CGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAATGGCTGAAAAATTGAATCGAACTGCAATTTTCAATAAAAGAGACTGGTTTTTGAATTTTCGATTAAAAAATGTGAGGGAGAAAATTCCGAAAATCGCGGAAAATGTGAGATCGATGGATATT</canonical_amplicon>
		<polymorphic_amplicon>CGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAATGGCTGAAAAAWTGAATCGAACTGCAATTTTCAATAAAAGAGACTGGTTTTTGAATTTTCGATTAAAAAATGTGAGGGAGAAAATTCCGAAAATCGCGGAAAATGTGAGATCGATGGATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38826</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>182167</contig_pos>
        <strand>+</strand>
        <context>GAGGTACGGT[A/T]CTTTTTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTCCGAAAATCGCGGAAAATGTGAGATCGATGGATATTGAGGTACGGT</left_flank>
        <right_flank>CTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGGTGCATTCTACCGTATGACTACAGTAATATCCCAAGGACCACACATTGTGATAATGTGAGTCTTTTAGGCGGGAAATTAAAAATTTCAAAAATTTCAGATTTTAAAAAACGAGACAAAGTATTTATTGTTCCCGATGTTTACGATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTGAAAATCAGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAATGGCTGAAAAATTGAATCGAACTGCAATTTTCAATAAAAGAGACTGGTTTTTGAATTTTCGATTAAAAAATGTGAGGGAGAAAATTCCGAAAATCGCGGAAAATGTGAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAATTTCAGATTTGTCGGAATTTTAAAAATACAGAAATTCAACATTTTTGAAAAATTCAGACTATCGTAACTTTTTGAGTTCTAGTCCGAACTTAAAAATTTTGACAGTTTTGAAATTATCAAAACAAGTCAAACTCAAAAATATCTAATTTTACAATATCGGATGAAAATTGTTAAAGTTACGGTAGTTTGAAAAAATGTTCCAGAAACGTTTTTTTGAAAAAAATTATCTCAGTTTTCAAGCTACCGTAACTTTTTGAGTTCAAATCCGAATTCAAAAATTTGAACAGTTTTGAGTTTATCAAAACAAGACAAACTCAAATATACCATAACTTCAAAAATCGAATGAACATTTCCAAAGTTACGGTAGTTTAAAAAATGTTCTCCAAAAATTTTTTTGCGAAAAAATATTTTGATT</canonical>
            <polymorphic>CATGGTGCATTCTACCGTATGACTACAGTAATATCCCAAGGACCACACATTGTGATAATGTGAGTCTTTTAGGCGGGAAATTAAAAATTTCAAAAATTTCAGATTTTAAAAAACGAGACAAAGTATTTATTGTTCCCGATGTTTACGATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTGAAAATCAGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAATGGCTGAAAAATTGAATCGAACTGCAATTTTCAATAAAAGAGACTGGTTTTTGAATTTTCGATTAAAAAATGTGAGGGAGAAAATTCCGAAAATCGCGGAAAATGTGAGATCGATGGATATTGAGGTACGGTWCTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAATTTCAGATTTGTCGGAATTTTAAAAATACAGAAATTCAACATTTTTGAAAAATTCAGACTATCGTAACTTTTTGAGTTCTAGTCCGAACTTAAAAATTTTGACAGTTTTGAAATTATCAAAACAAGTCAAACTCAAAAATATCTAATTTTACAATATCGGATGAAAATTGTTAAAGTTACGGTAGTTTGAAAAAATGTTCCAGAAACGTTTTTTTGAAAAAAATTATCTCAGTTTTCAAGCTACCGTAACTTTTTGAGTTCAAATCCGAATTCAAAAATTTGAACAGTTTTGAGTTTATCAAAACAAGACAAACTCAAATATACCATAACTTCAAAAATCGAATGAACATTTCCAAAGTTACGGTAGTTTAAAAAATGTTCTCCAAAAATTTTTTTGCGAAAAAATATTTTGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 494 5</canonical_bands>
                <polymorphic_bands>506 494</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTTTGAATTTTCGATTAAA</pcr_primer_p1>
		<pcr_primer_p2>TTCGATTTTTGAAGTTATGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>516</pcr_amplicon_size>
		<canonical_amplicon>GGTTTTTGAATTTTCGATTAAAAAATGTGAGGGAGAAAATTCCGAAAATCGCGGAAAATGTGAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAATTTCAGATTTGTCGGAATTTTAAAAATACAGAAATTCAACATTTTTGAAAAATTCAGACTATCGTAACTTTTTGAGTTCTAGTCCGAACTTAAAAATTTTGACAGTTTTGAAATTATCAAAACAAGTCAAACTCAAAAATATCTAATTTTACAATATCGGATGAAAATTGTTAAAGTTACGGTAGTTTGAAAAAATGTTCCAGAAACGTTTTTTTGAAAAAAATTATCTCAGTTTTCAAGCTACCGTAACTTTTTGAGTTCAAATCCGAATTCAAAAATTTGAACAGTTTTGAGTTTATCAAAACAAGACAAACTCAAATATACCATAACTTCAAAAATCGAA</canonical_amplicon>
		<polymorphic_amplicon>GGTTTTTGAATTTTCGATTAAAAAATGTGAGGGAGAAAATTCCGAAAATCGCGGAAAATGTGAGATCGATGGATATTGAGGTACGGTWCTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAATTTCAGATTTGTCGGAATTTTAAAAATACAGAAATTCAACATTTTTGAAAAATTCAGACTATCGTAACTTTTTGAGTTCTAGTCCGAACTTAAAAATTTTGACAGTTTTGAAATTATCAAAACAAGTCAAACTCAAAAATATCTAATTTTACAATATCGGATGAAAATTGTTAAAGTTACGGTAGTTTGAAAAAATGTTCCAGAAACGTTTTTTTGAAAAAAATTATCTCAGTTTTCAAGCTACCGTAACTTTTTGAGTTCAAATCCGAATTCAAAAATTTGAACAGTTTTGAGTTTATCAAAACAAGACAAACTCAAATATACCATAACTTCAAAAATCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38827</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>182252</contig_pos>
        <strand></strand>
        <context>ttttttgaaa[A/T]tttcagattt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAA</left_flank>
        <right_flank>TTTCAGATTTGTCGGAATTTTAAAAATACAGAAATTCAACATTTTTGAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTCAAAAATTTCAGATTTTAAAAAACGAGACAAAGTATTTATTGTTCCCGATGTTTACGATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTGAAAATCAGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAATGGCTGAAAAATTGAATCGAACTGCAATTTTCAATAAAAGAGACTGGTTTTTGAATTTTCGATTAAAAAATGTGAGGGAGAAAATTCCGAAAATCGCGGAAAATGTGAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAATTTCAGATTTGTCGGAATTTTAAAAATACAGAAATTCAACATTTTTGAAAAATTCAGACTATCGTAACTTTTTGAGTTCTAGTCCGAACTTAAAAATTTTGACAGTTTTGAAATTATCAAAACAAGTCAAACTCAAAAATATCTAATTTTACAATATCGGATGAAAATTGTTAAAGTTACGGTAGTTTGAAAAAATGTTCCAGAAACGTTTTTTTGAAAAAAATTATCTCAGTTTTCAAGCTACCGTAACTTTTTGAGTTCAAATCCGAATTCAAAAATTTGAACAGTTTTGAGTTTATCAAAACAAGACAAACTCAAATATACCATAACTTCAAAAATCGAATGAACATTTCCAAAGTTACGGTAGTTTAAAAAATGTTCTCCAAAAATTTTTTTGCGAAAAAATATTTTGATTTTCGATTTTTTCAAACTACCGTAATTTTTCCAGTTTTAGACTAAATATGAAAATTCAAACGGTTTTGATTACATTGAAATCAGAC</canonical>
            <polymorphic>AATTTCAAAAATTTCAGATTTTAAAAAACGAGACAAAGTATTTATTGTTCCCGATGTTTACGATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTGAAAATCAGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAATGGCTGAAAAATTGAATCGAACTGCAATTTTCAATAAAAGAGACTGGTTTTTGAATTTTCGATTAAAAAATGTGAGGGAGAAAATTCCGAAAATCGCGGAAAATGTGAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAWTTTCAGATTTGTCGGAATTTTAAAAATACAGAAATTCAACATTTTTGAAAAATTCAGACTATCGTAACTTTTTGAGTTCTAGTCCGAACTTAAAAATTTTGACAGTTTTGAAATTATCAAAACAAGTCAAACTCAAAAATATCTAATTTTACAATATCGGATGAAAATTGTTAAAGTTACGGTAGTTTGAAAAAATGTTCCAGAAACGTTTTTTTGAAAAAAATTATCTCAGTTTTCAAGCTACCGTAACTTTTTGAGTTCAAATCCGAATTCAAAAATTTGAACAGTTTTGAGTTTATCAAAACAAGACAAACTCAAATATACCATAACTTCAAAAATCGAATGAACATTTCCAAAGTTACGGTAGTTTAAAAAATGTTCTCCAAAAATTTTTTTGCGAAAAAATATTTTGATTTTCGATTTTTTCAAACTACCGTAATTTTTCCAGTTTTAGACTAAATATGAAAATTCAAACGGTTTTGATTACATTGAAATCAGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>174 111 82 79 73 71 65 44 39 38 34 29 25 24 18 17 17 17 11 9 9 8 6</canonical_bands>
                <polymorphic_bands>174 111 82 79 73 71 65 44 42 39 38 34 29 24 18 17 17 11 9 9 8 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>111 82 71 65 56 50 47 44 34 33 29 29 29 28 25 23 21 20 18 17 17 17 17 16 16 14 13 11 10 9 9 8 6 5 0</canonical_bands>
                <polymorphic_bands>111 82 71 65 56 50 47 44 42 34 33 29 29 29 28 23 21 20 18 17 17 17 16 16 14 13 11 10 9 9 8 6 5 0</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGATCGATGGATATTGAGGTA</pcr_primer_p1>
		<pcr_primer_p2>TTCGATTTTTGAAGTTATGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>455</pcr_amplicon_size>
		<canonical_amplicon>GAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAATTTCAGATTTGTCGGAATTTTAAAAATACAGAAATTCAACATTTTTGAAAAATTCAGACTATCGTAACTTTTTGAGTTCTAGTCCGAACTTAAAAATTTTGACAGTTTTGAAATTATCAAAACAAGTCAAACTCAAAAATATCTAATTTTACAATATCGGATGAAAATTGTTAAAGTTACGGTAGTTTGAAAAAATGTTCCAGAAACGTTTTTTTGAAAAAAATTATCTCAGTTTTCAAGCTACCGTAACTTTTTGAGTTCAAATCCGAATTCAAAAATTTGAACAGTTTTGAGTTTATCAAAACAAGACAAACTCAAATATACCATAACTTCAAAAATCGAA</canonical_amplicon>
		<polymorphic_amplicon>GAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAWTTTCAGATTTGTCGGAATTTTAAAAATACAGAAATTCAACATTTTTGAAAAATTCAGACTATCGTAACTTTTTGAGTTCTAGTCCGAACTTAAAAATTTTGACAGTTTTGAAATTATCAAAACAAGTCAAACTCAAAAATATCTAATTTTACAATATCGGATGAAAATTGTTAAAGTTACGGTAGTTTGAAAAAATGTTCCAGAAACGTTTTTTTGAAAAAAATTATCTCAGTTTTCAAGCTACCGTAACTTTTTGAGTTCAAATCCGAATTCAAAAATTTGAACAGTTTTGAGTTTATCAAAACAAGACAAACTCAAATATACCATAACTTCAAAAATCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38828</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>182292</contig_pos>
        <strand></strand>
        <context>agaaattcaa[C/A]atttttgaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTTTTTGAAAATTTCAGATTTGTCGGAATTTTAAAAATACAGAAATTCAA</left_flank>
        <right_flank>ATTTTTGAAAAATTCAGACTATCGTAACTTTTTGAGTTCTAGTCCGAACT</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTATTGTTCCCGATGTTTACGATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTGAAAATCAGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAATGGCTGAAAAATTGAATCGAACTGCAATTTTCAATAAAAGAGACTGGTTTTTGAATTTTCGATTAAAAAATGTGAGGGAGAAAATTCCGAAAATCGCGGAAAATGTGAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAATTTCAGATTTGTCGGAATTTTAAAAATACAGAAATTCAACATTTTTGAAAAATTCAGACTATCGTAACTTTTTGAGTTCTAGTCCGAACTTAAAAATTTTGACAGTTTTGAAATTATCAAAACAAGTCAAACTCAAAAATATCTAATTTTACAATATCGGATGAAAATTGTTAAAGTTACGGTAGTTTGAAAAAATGTTCCAGAAACGTTTTTTTGAAAAAAATTATCTCAGTTTTCAAGCTACCGTAACTTTTTGAGTTCAAATCCGAATTCAAAAATTTGAACAGTTTTGAGTTTATCAAAACAAGACAAACTCAAATATACCATAACTTCAAAAATCGAATGAACATTTCCAAAGTTACGGTAGTTTAAAAAATGTTCTCCAAAAATTTTTTTGCGAAAAAATATTTTGATTTTCGATTTTTTCAAACTACCGTAATTTTTCCAGTTTTAGACTAAATATGAAAATTCAAACGGTTTTGATTACATTGAAATCAGACAAACTCAATAATACCAATACTTCCAAAGTTACGGTAGTTT</canonical>
            <polymorphic>TTTATTGTTCCCGATGTTTACGATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTGAAAATCAGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAATGGCTGAAAAATTGAATCGAACTGCAATTTTCAATAAAAGAGACTGGTTTTTGAATTTTCGATTAAAAAATGTGAGGGAGAAAATTCCGAAAATCGCGGAAAATGTGAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAATTTCAGATTTGTCGGAATTTTAAAAATACAGAAATTCAAMATTTTTGAAAAATTCAGACTATCGTAACTTTTTGAGTTCTAGTCCGAACTTAAAAATTTTGACAGTTTTGAAATTATCAAAACAAGTCAAACTCAAAAATATCTAATTTTACAATATCGGATGAAAATTGTTAAAGTTACGGTAGTTTGAAAAAATGTTCCAGAAACGTTTTTTTGAAAAAAATTATCTCAGTTTTCAAGCTACCGTAACTTTTTGAGTTCAAATCCGAATTCAAAAATTTGAACAGTTTTGAGTTTATCAAAACAAGACAAACTCAAATATACCATAACTTCAAAAATCGAATGAACATTTCCAAAGTTACGGTAGTTTAAAAAATGTTCTCCAAAAATTTTTTTGCGAAAAAATATTTTGATTTTCGATTTTTTCAAACTACCGTAATTTTTCCAGTTTTAGACTAAATATGAAAATTCAAACGGTTTTGATTACATTGAAATCAGACAAACTCAATAATACCAATACTTCCAAAGTTACGGTAGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGATCGATGGATATTGAGGTA</pcr_primer_p1>
		<pcr_primer_p2>TTCGATTTTTGAAGTTATGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>455</pcr_amplicon_size>
		<canonical_amplicon>GAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAATTTCAGATTTGTCGGAATTTTAAAAATACAGAAATTCAACATTTTTGAAAAATTCAGACTATCGTAACTTTTTGAGTTCTAGTCCGAACTTAAAAATTTTGACAGTTTTGAAATTATCAAAACAAGTCAAACTCAAAAATATCTAATTTTACAATATCGGATGAAAATTGTTAAAGTTACGGTAGTTTGAAAAAATGTTCCAGAAACGTTTTTTTGAAAAAAATTATCTCAGTTTTCAAGCTACCGTAACTTTTTGAGTTCAAATCCGAATTCAAAAATTTGAACAGTTTTGAGTTTATCAAAACAAGACAAACTCAAATATACCATAACTTCAAAAATCGAA</canonical_amplicon>
		<polymorphic_amplicon>GAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAATTTCAGATTTGTCGGAATTTTAAAAATACAGAAATTCAAMATTTTTGAAAAATTCAGACTATCGTAACTTTTTGAGTTCTAGTCCGAACTTAAAAATTTTGACAGTTTTGAAATTATCAAAACAAGTCAAACTCAAAAATATCTAATTTTACAATATCGGATGAAAATTGTTAAAGTTACGGTAGTTTGAAAAAATGTTCCAGAAACGTTTTTTTGAAAAAAATTATCTCAGTTTTCAAGCTACCGTAACTTTTTGAGTTCAAATCCGAATTCAAAAATTTGAACAGTTTTGAGTTTATCAAAACAAGACAAACTCAAATATACCATAACTTCAAAAATCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38829</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>182314</contig_pos>
        <strand></strand>
        <context>attcagacta[T/C]ygtaactttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCGGAATTTTAAAAATACAGAAATTCAACATTTTTGAAAAATTCAGACTA</left_flank>
        <right_flank>CGTAACTTTTTGAGTTCTAGTCCGAACTTAAAAATTTTGACAGTTTTGAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTGAAAATCAGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAATGGCTGAAAAATTGAATCGAACTGCAATTTTCAATAAAAGAGACTGGTTTTTGAATTTTCGATTAAAAAATGTGAGGGAGAAAATTCCGAAAATCGCGGAAAATGTGAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAATTTCAGATTTGTCGGAATTTTAAAAATACAGAAATTCAACATTTTTGAAAAATTCAGACTATCGTAACTTTTTGAGTTCTAGTCCGAACTTAAAAATTTTGACAGTTTTGAAATTATCAAAACAAGTCAAACTCAAAAATATCTAATTTTACAATATCGGATGAAAATTGTTAAAGTTACGGTAGTTTGAAAAAATGTTCCAGAAACGTTTTTTTGAAAAAAATTATCTCAGTTTTCAAGCTACCGTAACTTTTTGAGTTCAAATCCGAATTCAAAAATTTGAACAGTTTTGAGTTTATCAAAACAAGACAAACTCAAATATACCATAACTTCAAAAATCGAATGAACATTTCCAAAGTTACGGTAGTTTAAAAAATGTTCTCCAAAAATTTTTTTGCGAAAAAATATTTTGATTTTCGATTTTTTCAAACTACCGTAATTTTTCCAGTTTTAGACTAAATATGAAAATTCAAACGGTTTTGATTACATTGAAATCAGACAAACTCAATAATACCAATACTTCCAAAGTTACGGTAGTTTGAAAAAAGAGGGCCGTTCTAAC</canonical>
            <polymorphic>ATAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTGAAAATCAGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAATGGCTGAAAAATTGAATCGAACTGCAATTTTCAATAAAAGAGACTGGTTTTTGAATTTTCGATTAAAAAATGTGAGGGAGAAAATTCCGAAAATCGCGGAAAATGTGAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAATTTCAGATTTGTCGGAATTTTAAAAATACAGAAATTCAACATTTTTGAAAAATTCAGACTAYCGTAACTTTTTGAGTTCTAGTCCGAACTTAAAAATTTTGACAGTTTTGAAATTATCAAAACAAGTCAAACTCAAAAATATCTAATTTTACAATATCGGATGAAAATTGTTAAAGTTACGGTAGTTTGAAAAAATGTTCCAGAAACGTTTTTTTGAAAAAAATTATCTCAGTTTTCAAGCTACCGTAACTTTTTGAGTTCAAATCCGAATTCAAAAATTTGAACAGTTTTGAGTTTATCAAAACAAGACAAACTCAAATATACCATAACTTCAAAAATCGAATGAACATTTCCAAAGTTACGGTAGTTTAAAAAATGTTCTCCAAAAATTTTTTTGCGAAAAAATATTTTGATTTTCGATTTTTTCAAACTACCGTAATTTTTCCAGTTTTAGACTAAATATGAAAATTCAAACGGTTTTGATTACATTGAAATCAGACAAACTCAATAATACCAATACTTCCAAAGTTACGGTAGTTTGAAAAAAGAGGGCCGTTCTAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGATCGATGGATATTGAGGTA</pcr_primer_p1>
		<pcr_primer_p2>TTCGATTTTTGAAGTTATGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>455</pcr_amplicon_size>
		<canonical_amplicon>GAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAATTTCAGATTTGTCGGAATTTTAAAAATACAGAAATTCAACATTTTTGAAAAATTCAGACTATCGTAACTTTTTGAGTTCTAGTCCGAACTTAAAAATTTTGACAGTTTTGAAATTATCAAAACAAGTCAAACTCAAAAATATCTAATTTTACAATATCGGATGAAAATTGTTAAAGTTACGGTAGTTTGAAAAAATGTTCCAGAAACGTTTTTTTGAAAAAAATTATCTCAGTTTTCAAGCTACCGTAACTTTTTGAGTTCAAATCCGAATTCAAAAATTTGAACAGTTTTGAGTTTATCAAAACAAGACAAACTCAAATATACCATAACTTCAAAAATCGAA</canonical_amplicon>
		<polymorphic_amplicon>GAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAATTTCAGATTTGTCGGAATTTTAAAAATACAGAAATTCAACATTTTTGAAAAATTCAGACTAYCGTAACTTTTTGAGTTCTAGTCCGAACTTAAAAATTTTGACAGTTTTGAAATTATCAAAACAAGTCAAACTCAAAAATATCTAATTTTACAATATCGGATGAAAATTGTTAAAGTTACGGTAGTTTGAAAAAATGTTCCAGAAACGTTTTTTTGAAAAAAATTATCTCAGTTTTCAAGCTACCGTAACTTTTTGAGTTCAAATCCGAATTCAAAAATTTGAACAGTTTTGAGTTTATCAAAACAAGACAAACTCAAATATACCATAACTTCAAAAATCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38830</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>182315</contig_pos>
        <strand></strand>
        <context>ttcagactay[C/T]gtaacttttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGAATTTTAAAAATACAGAAATTCAACATTTTTGAAAAATTCAGACTAT</left_flank>
        <right_flank>GTAACTTTTTGAGTTCTAGTCCGAACTTAAAAATTTTGACAGTTTTGAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTGAAAATCAGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAATGGCTGAAAAATTGAATCGAACTGCAATTTTCAATAAAAGAGACTGGTTTTTGAATTTTCGATTAAAAAATGTGAGGGAGAAAATTCCGAAAATCGCGGAAAATGTGAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAATTTCAGATTTGTCGGAATTTTAAAAATACAGAAATTCAACATTTTTGAAAAATTCAGACTATCGTAACTTTTTGAGTTCTAGTCCGAACTTAAAAATTTTGACAGTTTTGAAATTATCAAAACAAGTCAAACTCAAAAATATCTAATTTTACAATATCGGATGAAAATTGTTAAAGTTACGGTAGTTTGAAAAAATGTTCCAGAAACGTTTTTTTGAAAAAAATTATCTCAGTTTTCAAGCTACCGTAACTTTTTGAGTTCAAATCCGAATTCAAAAATTTGAACAGTTTTGAGTTTATCAAAACAAGACAAACTCAAATATACCATAACTTCAAAAATCGAATGAACATTTCCAAAGTTACGGTAGTTTAAAAAATGTTCTCCAAAAATTTTTTTGCGAAAAAATATTTTGATTTTCGATTTTTTCAAACTACCGTAATTTTTCCAGTTTTAGACTAAATATGAAAATTCAAACGGTTTTGATTACATTGAAATCAGACAAACTCAATAATACCAATACTTCCAAAGTTACGGTAGTTTGAAAAAAGAGGGCCGTTCTAACT</canonical>
            <polymorphic>TAATCAGTGGGAGTGGATTAGGTGAGAGAATTTCTCAAAAATTTGATAAATTTGTTCAAGAAAAAATTAGGATTCCAAAAATCCAAGAATTCTGAAAATCAGCAAAAACTGAGCCGAGTTATGATGTTTTGAAGAAAAAAGTTAACAACTTTTTTCGAAATTTTATATTTTTCGAAATTTCAGGAAATCAATTATTCGAAATTTTCTCGCTTCTTGGAATGGCTGAAAAATTGAATCGAACTGCAATTTTCAATAAAAGAGACTGGTTTTTGAATTTTCGATTAAAAAATGTGAGGGAGAAAATTCCGAAAATCGCGGAAAATGTGAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAATTTCAGATTTGTCGGAATTTTAAAAATACAGAAATTCAACATTTTTGAAAAATTCAGACTATYGTAACTTTTTGAGTTCTAGTCCGAACTTAAAAATTTTGACAGTTTTGAAATTATCAAAACAAGTCAAACTCAAAAATATCTAATTTTACAATATCGGATGAAAATTGTTAAAGTTACGGTAGTTTGAAAAAATGTTCCAGAAACGTTTTTTTGAAAAAAATTATCTCAGTTTTCAAGCTACCGTAACTTTTTGAGTTCAAATCCGAATTCAAAAATTTGAACAGTTTTGAGTTTATCAAAACAAGACAAACTCAAATATACCATAACTTCAAAAATCGAATGAACATTTCCAAAGTTACGGTAGTTTAAAAAATGTTCTCCAAAAATTTTTTTGCGAAAAAATATTTTGATTTTCGATTTTTTCAAACTACCGTAATTTTTCCAGTTTTAGACTAAATATGAAAATTCAAACGGTTTTGATTACATTGAAATCAGACAAACTCAATAATACCAATACTTCCAAAGTTACGGTAGTTTGAAAAAAGAGGGCCGTTCTAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGATCGATGGATATTGAGGTA</pcr_primer_p1>
		<pcr_primer_p2>TTCGATTTTTGAAGTTATGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>455</pcr_amplicon_size>
		<canonical_amplicon>GAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAATTTCAGATTTGTCGGAATTTTAAAAATACAGAAATTCAACATTTTTGAAAAATTCAGACTATCGTAACTTTTTGAGTTCTAGTCCGAACTTAAAAATTTTGACAGTTTTGAAATTATCAAAACAAGTCAAACTCAAAAATATCTAATTTTACAATATCGGATGAAAATTGTTAAAGTTACGGTAGTTTGAAAAAATGTTCCAGAAACGTTTTTTTGAAAAAAATTATCTCAGTTTTCAAGCTACCGTAACTTTTTGAGTTCAAATCCGAATTCAAAAATTTGAACAGTTTTGAGTTTATCAAAACAAGACAAACTCAAATATACCATAACTTCAAAAATCGAA</canonical_amplicon>
		<polymorphic_amplicon>GAGATCGATGGATATTGAGGTACGGTACTTTTTTTTTGGAGAATTTAAATTTAATTTTTAAATAAAAGTTTCAATTTTCGAAAGGAATTTTGAAATCCTGATTTTTTGAAAATTTCAGATTTGTCGGAATTTTAAAAATACAGAAATTCAACATTTTTGAAAAATTCAGACTATYGTAACTTTTTGAGTTCTAGTCCGAACTTAAAAATTTTGACAGTTTTGAAATTATCAAAACAAGTCAAACTCAAAAATATCTAATTTTACAATATCGGATGAAAATTGTTAAAGTTACGGTAGTTTGAAAAAATGTTCCAGAAACGTTTTTTTGAAAAAAATTATCTCAGTTTTCAAGCTACCGTAACTTTTTGAGTTCAAATCCGAATTCAAAAATTTGAACAGTTTTGAGTTTATCAAAACAAGACAAACTCAAATATACCATAACTTCAAAAATCGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38831</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>184197</contig_pos>
        <strand></strand>
        <context>gaagctaatg[G/A]tacttagatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAATTGTTTTTCAAACCTAGCAATATTTATACTCATTTTGAAGCTAATG</left_flank>
        <right_flank>TACTTAGATTCAATTTTCCTATTTTTCAAAAAATTTCAGCCAATTTTTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTTTTTGAGTTTGTCTGTTTTAGCTGAACTTGAAACTATTTGAATTTTCAGGTTTGAACAAAAATTCCAAAAGTTACGGTAGTTTGAAAGTTTTGGCGCTTTTTTGGAAAAAAAGTTTTTGGTACATTTTTCAAACTACCGTAATTCATTCAATTTTTGTCAAATTTTTGAAAATTTAATTTTTTTGGGTTTGTCTATTTTAGCCAAACCTGAAACTGTTTGAATTTTTGAATTTAAACAAATATTCCAAAAGTTACGGTAGTTTGAAAATTCGAAAAAAACAGATTTTTTTGAAAAACAAAATTTGGTACATTTTTTTCAATCTACTGTAGCTCATTCAATTTTTGTTCAGTTTTTGAAATTTTTGTATTTCTGATTTTATCTATTTTTATCTAACGTTTCGGATTTTTGATTTTGGAGGAAAATTCCAAAAGTTACGGTAGTTTGAAAATTGTTTTTCAAACCTAGCAATATTTATACTCATTTTGAAGCTAATGGTACTTAGATTCAATTTTCCTATTTTTCAAAAAATTTCAGCCAATTTTTTTTCAGATCCCGGTCCAATTTTCATCTTCAGCAATGAACAAAATTGGGTGAAACAGGAAATTTCGAAAAAATCAAAATTGAAAAATGAGATTCGAATAATGCCAACGCCAAAAGAGAAGCCGTTCAAGGATTTGTATTTTTCTCAAAAATACTGTAATTCGGTGTTAATTACAGGTAATTAACCAATTAAAAAATTTTGCAAAACATTTTTTTTTTTGGCGCCAATTTTTTTTTTCAAAAATTTTGATATTTTCAGCTCCTTCCTCTACATTTGGCTGGTGGTTAGGATATTTGTCAAAAAATCAGACCAATGTTTATTTTAGAGATATTCGGGAAGTTGAGGATAGTGTAAGTACAGTAATCTTTTTCAAAAAAAAAATTATTTTCAGGTAAAATACCAAATGATCGATGACGATTTTTTCCCTGCGAAATGGAATAAATTGGGCATGATG</canonical>
            <polymorphic>AACTTTTTGAGTTTGTCTGTTTTAGCTGAACTTGAAACTATTTGAATTTTCAGGTTTGAACAAAAATTCCAAAAGTTACGGTAGTTTGAAAGTTTTGGCGCTTTTTTGGAAAAAAAGTTTTTGGTACATTTTTCAAACTACCGTAATTCATTCAATTTTTGTCAAATTTTTGAAAATTTAATTTTTTTGGGTTTGTCTATTTTAGCCAAACCTGAAACTGTTTGAATTTTTGAATTTAAACAAATATTCCAAAAGTTACGGTAGTTTGAAAATTCGAAAAAAACAGATTTTTTTGAAAAACAAAATTTGGTACATTTTTTTCAATCTACTGTAGCTCATTCAATTTTTGTTCAGTTTTTGAAATTTTTGTATTTCTGATTTTATCTATTTTTATCTAACGTTTCGGATTTTTGATTTTGGAGGAAAATTCCAAAAGTTACGGTAGTTTGAAAATTGTTTTTCAAACCTAGCAATATTTATACTCATTTTGAAGCTAATGRTACTTAGATTCAATTTTCCTATTTTTCAAAAAATTTCAGCCAATTTTTTTTCAGATCCCGGTCCAATTTTCATCTTCAGCAATGAACAAAATTGGGTGAAACAGGAAATTTCGAAAAAATCAAAATTGAAAAATGAGATTCGAATAATGCCAACGCCAAAAGAGAAGCCGTTCAAGGATTTGTATTTTTCTCAAAAATACTGTAATTCGGTGTTAATTACAGGTAATTAACCAATTAAAAAATTTTGCAAAACATTTTTTTTTTTGGCGCCAATTTTTTTTTTCAAAAATTTTGATATTTTCAGCTCCTTCCTCTACATTTGGCTGGTGGTTAGGATATTTGTCAAAAAATCAGACCAATGTTTATTTTAGAGATATTCGGGAAGTTGAGGATAGTGTAAGTACAGTAATCTTTTTCAAAAAAAAAATTATTTTCAGGTAAAATACCAAATGATCGATGACGATTTTTTCCCTGCGAAATGGAATAAATTGGGCATGATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>401 190 186 125 98</canonical_bands>
                <polymorphic_bands>591 186 125 98</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCAATTTTTGTTCAGTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>GTTCATTGCTGAAGATGAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCAATTTTTGTTCAGTTTTTGAAATTTTTGTATTTCTGATTTTATCTATTTTTATCTAACGTTTCGGATTTTTGATTTTGGAGGAAAATTCCAAAAGTTACGGTAGTTTGAAAATTGTTTTTCAAACCTAGCAATATTTATACTCATTTTGAAGCTAATGGTACTTAGATTCAATTTTCCTATTTTTCAAAAAATTTCAGCCAATTTTTTTTCAGATCCCGGTCCAATTTTCATCTTCAGCAATGAAC</canonical_amplicon>
		<polymorphic_amplicon>ATTCAATTTTTGTTCAGTTTTTGAAATTTTTGTATTTCTGATTTTATCTATTTTTATCTAACGTTTCGGATTTTTGATTTTGGAGGAAAATTCCAAAAGTTACGGTAGTTTGAAAATTGTTTTTCAAACCTAGCAATATTTATACTCATTTTGAAGCTAATGRTACTTAGATTCAATTTTCCTATTTTTCAAAAAATTTCAGCCAATTTTTTTTCAGATCCCGGTCCAATTTTCATCTTCAGCAATGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38832</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>184385</contig_pos>
        <strand></strand>
        <context>ATTTGTATTT[T/C]TCTCAAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTCGAATAATGCCAACGCCAAAAGAGAAGCCGTTCAAGGATTTGTATTT</left_flank>
        <right_flank>TCTCAAAAATACTGTAATTCGGTGTTAATTACAGGTAATTAACCAATTAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGTTTGTCTATTTTAGCCAAACCTGAAACTGTTTGAATTTTTGAATTTAAACAAATATTCCAAAAGTTACGGTAGTTTGAAAATTCGAAAAAAACAGATTTTTTTGAAAAACAAAATTTGGTACATTTTTTTCAATCTACTGTAGCTCATTCAATTTTTGTTCAGTTTTTGAAATTTTTGTATTTCTGATTTTATCTATTTTTATCTAACGTTTCGGATTTTTGATTTTGGAGGAAAATTCCAAAAGTTACGGTAGTTTGAAAATTGTTTTTCAAACCTAGCAATATTTATACTCATTTTGAAGCTAATGGTACTTAGATTCAATTTTCCTATTTTTCAAAAAATTTCAGCCAATTTTTTTTCAGATCCCGGTCCAATTTTCATCTTCAGCAATGAACAAAATTGGGTGAAACAGGAAATTTCGAAAAAATCAAAATTGAAAAATGAGATTCGAATAATGCCAACGCCAAAAGAGAAGCCGTTCAAGGATTTGTATTTTTCTCAAAAATACTGTAATTCGGTGTTAATTACAGGTAATTAACCAATTAAAAAATTTTGCAAAACATTTTTTTTTTTGGCGCCAATTTTTTTTTTCAAAAATTTTGATATTTTCAGCTCCTTCCTCTACATTTGGCTGGTGGTTAGGATATTTGTCAAAAAATCAGACCAATGTTTATTTTAGAGATATTCGGGAAGTTGAGGATAGTGTAAGTACAGTAATCTTTTTCAAAAAAAAAATTATTTTCAGGTAAAATACCAAATGATCGATGACGATTTTTTCCCTGCGAAATGGAATAAATTGGGCATGATGAGCAATAATGGGACTATTTTTCTGAAGAAAAATGTCTGAAAATCTCGAAATTTTAGTTTGACTTTTTGTGATCTCTAATTTTTTAAAAATAAATTTTTTTGAATTTTTTTTTAATTCCATATTTATACTCATTAGAACCGGTTTTATTTGCTGATTCTAACCTTGCAATTTGTTTTGAGCTAGCTTGA</canonical>
            <polymorphic>GGGTTTGTCTATTTTAGCCAAACCTGAAACTGTTTGAATTTTTGAATTTAAACAAATATTCCAAAAGTTACGGTAGTTTGAAAATTCGAAAAAAACAGATTTTTTTGAAAAACAAAATTTGGTACATTTTTTTCAATCTACTGTAGCTCATTCAATTTTTGTTCAGTTTTTGAAATTTTTGTATTTCTGATTTTATCTATTTTTATCTAACGTTTCGGATTTTTGATTTTGGAGGAAAATTCCAAAAGTTACGGTAGTTTGAAAATTGTTTTTCAAACCTAGCAATATTTATACTCATTTTGAAGCTAATGGTACTTAGATTCAATTTTCCTATTTTTCAAAAAATTTCAGCCAATTTTTTTTCAGATCCCGGTCCAATTTTCATCTTCAGCAATGAACAAAATTGGGTGAAACAGGAAATTTCGAAAAAATCAAAATTGAAAAATGAGATTCGAATAATGCCAACGCCAAAAGAGAAGCCGTTCAAGGATTTGTATTTYTCTCAAAAATACTGTAATTCGGTGTTAATTACAGGTAATTAACCAATTAAAAAATTTTGCAAAACATTTTTTTTTTTGGCGCCAATTTTTTTTTTCAAAAATTTTGATATTTTCAGCTCCTTCCTCTACATTTGGCTGGTGGTTAGGATATTTGTCAAAAAATCAGACCAATGTTTATTTTAGAGATATTCGGGAAGTTGAGGATAGTGTAAGTACAGTAATCTTTTTCAAAAAAAAAATTATTTTCAGGTAAAATACCAAATGATCGATGACGATTTTTTCCCTGCGAAATGGAATAAATTGGGCATGATGAGCAATAATGGGACTATTTTTCTGAAGAAAAATGTCTGAAAATCTCGAAATTTTAGTTTGACTTTTTGTGATCTCTAATTTTTTAAAAATAAATTTTTTTGAATTTTTTTTTAATTCCATATTTATACTCATTAGAACCGGTTTTATTTGCTGATTCTAACCTTGCAATTTGTTTTGAGCTAGCTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTTTCATCTTCAGCAATG</pcr_primer_p1>
		<pcr_primer_p2>GAAGGAGCTGAAAATATCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAATTTTCATCTTCAGCAATGAACAAAATTGGGTGAAACAGGAAATTTCGAAAAAATCAAAATTGAAAAATGAGATTCGAATAATGCCAACGCCAAAAGAGAAGCCGTTCAAGGATTTGTATTTTTCTCAAAAATACTGTAATTCGGTGTTAATTACAGGTAATTAACCAATTAAAAAATTTTGCAAAACATTTTTTTTTTTGGCGCCAATTTTTTTTTTCAAAAATTTTGATATTTTCAGCTCCTTC</canonical_amplicon>
		<polymorphic_amplicon>CAATTTTCATCTTCAGCAATGAACAAAATTGGGTGAAACAGGAAATTTCGAAAAAATCAAAATTGAAAAATGAGATTCGAATAATGCCAACGCCAAAAGAGAAGCCGTTCAAGGATTTGTATTTYTCTCAAAAATACTGTAATTCGGTGTTAATTACAGGTAATTAACCAATTAAAAAATTTTGCAAAACATTTTTTTTTTTGGCGCCAATTTTTTTTTTCAAAAATTTTGATATTTTCAGCTCCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38833</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>184471</contig_pos>
        <strand></strand>
        <context>TTGGCGCCAA[T/A]WTTTTTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TAATTAACCAATTAAAAAATTTTGCAAAACATTTTTTTTTTTGGCGCCAA</left_flank>
        <right_flank>TTTTTTTTTCAAAAATTTTGATATTTTCAGCTCCTTCCTCTACATTTGGC</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAAAAAAACAGATTTTTTTGAAAAACAAAATTTGGTACATTTTTTTCAATCTACTGTAGCTCATTCAATTTTTGTTCAGTTTTTGAAATTTTTGTATTTCTGATTTTATCTATTTTTATCTAACGTTTCGGATTTTTGATTTTGGAGGAAAATTCCAAAAGTTACGGTAGTTTGAAAATTGTTTTTCAAACCTAGCAATATTTATACTCATTTTGAAGCTAATGGTACTTAGATTCAATTTTCCTATTTTTCAAAAAATTTCAGCCAATTTTTTTTCAGATCCCGGTCCAATTTTCATCTTCAGCAATGAACAAAATTGGGTGAAACAGGAAATTTCGAAAAAATCAAAATTGAAAAATGAGATTCGAATAATGCCAACGCCAAAAGAGAAGCCGTTCAAGGATTTGTATTTTTCTCAAAAATACTGTAATTCGGTGTTAATTACAGGTAATTAACCAATTAAAAAATTTTGCAAAACATTTTTTTTTTTGGCGCCAATTTTTTTTTTCAAAAATTTTGATATTTTCAGCTCCTTCCTCTACATTTGGCTGGTGGTTAGGATATTTGTCAAAAAATCAGACCAATGTTTATTTTAGAGATATTCGGGAAGTTGAGGATAGTGTAAGTACAGTAATCTTTTTCAAAAAAAAAATTATTTTCAGGTAAAATACCAAATGATCGATGACGATTTTTTCCCTGCGAAATGGAATAAATTGGGCATGATGAGCAATAATGGGACTATTTTTCTGAAGAAAAATGTCTGAAAATCTCGAAATTTTAGTTTGACTTTTTGTGATCTCTAATTTTTTAAAAATAAATTTTTTTGAATTTTTTTTTAATTCCATATTTATACTCATTAGAACCGGTTTTATTTGCTGATTCTAACCTTGCAATTTGTTTTGAGCTAGCTTGAAAATGTGCAAAGTTACGGGCCCAATTGCGCGCCAGTGAGAGACGCAGACACTCTCGCTGTCTGCGTCTCTTCTCGGCACGCGCGCG</canonical>
            <polymorphic>CGAAAAAAACAGATTTTTTTGAAAAACAAAATTTGGTACATTTTTTTCAATCTACTGTAGCTCATTCAATTTTTGTTCAGTTTTTGAAATTTTTGTATTTCTGATTTTATCTATTTTTATCTAACGTTTCGGATTTTTGATTTTGGAGGAAAATTCCAAAAGTTACGGTAGTTTGAAAATTGTTTTTCAAACCTAGCAATATTTATACTCATTTTGAAGCTAATGGTACTTAGATTCAATTTTCCTATTTTTCAAAAAATTTCAGCCAATTTTTTTTCAGATCCCGGTCCAATTTTCATCTTCAGCAATGAACAAAATTGGGTGAAACAGGAAATTTCGAAAAAATCAAAATTGAAAAATGAGATTCGAATAATGCCAACGCCAAAAGAGAAGCCGTTCAAGGATTTGTATTTTTCTCAAAAATACTGTAATTCGGTGTTAATTACAGGTAATTAACCAATTAAAAAATTTTGCAAAACATTTTTTTTTTTGGCGCCAAWTTTTTTTTTCAAAAATTTTGATATTTTCAGCTCCTTCCTCTACATTTGGCTGGTGGTTAGGATATTTGTCAAAAAATCAGACCAATGTTTATTTTAGAGATATTCGGGAAGTTGAGGATAGTGTAAGTACAGTAATCTTTTTCAAAAAAAAAATTATTTTCAGGTAAAATACCAAATGATCGATGACGATTTTTTCCCTGCGAAATGGAATAAATTGGGCATGATGAGCAATAATGGGACTATTTTTCTGAAGAAAAATGTCTGAAAATCTCGAAATTTTAGTTTGACTTTTTGTGATCTCTAATTTTTTAAAAATAAATTTTTTTGAATTTTTTTTTAATTCCATATTTATACTCATTAGAACCGGTTTTATTTGCTGATTCTAACCTTGCAATTTGTTTTGAGCTAGCTTGAAAATGTGCAAAGTTACGGGCCCAATTGCGCGCCAGTGAGAGACGCAGACACTCTCGCTGTCTGCGTCTCTTCTCGGCACGCGCGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>138 80 64 64 62 61 60 54 44 38 31 29 28 26 25 23 20 20 17 17 16 15 11 11 10 10 10 8 8</canonical_bands>
                <polymorphic_bands>138 80 64 64 62 61 60 54 47 44 38 29 28 26 25 23 20 20 17 17 15 11 11 10 10 10 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAAAATGAGATTCGAATAATG</pcr_primer_p1>
		<pcr_primer_p2>CCCGAATATCTCTAAAATAAACA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TGAAAAATGAGATTCGAATAATGCCAACGCCAAAAGAGAAGCCGTTCAAGGATTTGTATTTTTCTCAAAAATACTGTAATTCGGTGTTAATTACAGGTAATTAACCAATTAAAAAATTTTGCAAAACATTTTTTTTTTTGGCGCCAATTTTTTTTTTCAAAAATTTTGATATTTTCAGCTCCTTCCTCTACATTTGGCTGGTGGTTAGGATATTTGTCAAAAAATCAGACCAATGTTTATTTTAGAGATATTCGGG</canonical_amplicon>
		<polymorphic_amplicon>TGAAAAATGAGATTCGAATAATGCCAACGCCAAAAGAGAAGCCGTTCAAGGATTTGTATTTTTCTCAAAAATACTGTAATTCGGTGTTAATTACAGGTAATTAACCAATTAAAAAATTTTGCAAAACATTTTTTTTTTTGGCGCCAAWTTTTTTTTTCAAAAATTTTGATATTTTCAGCTCCTTCCTCTACATTTGGCTGGTGGTTAGGATATTTGTCAAAAAATCAGACCAATGTTTATTTTAGAGATATTCGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38834</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>184472</contig_pos>
        <strand></strand>
        <context>TGGCGCCAAW[T/A]TTTTTTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AATTAACCAATTAAAAAATTTTGCAAAACATTTTTTTTTTTGGCGCCAAT</left_flank>
        <right_flank>TTTTTTTTCAAAAATTTTGATATTTTCAGCTCCTTCCTCTACATTTGGCT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAAAACAGATTTTTTTGAAAAACAAAATTTGGTACATTTTTTTCAATCTACTGTAGCTCATTCAATTTTTGTTCAGTTTTTGAAATTTTTGTATTTCTGATTTTATCTATTTTTATCTAACGTTTCGGATTTTTGATTTTGGAGGAAAATTCCAAAAGTTACGGTAGTTTGAAAATTGTTTTTCAAACCTAGCAATATTTATACTCATTTTGAAGCTAATGGTACTTAGATTCAATTTTCCTATTTTTCAAAAAATTTCAGCCAATTTTTTTTCAGATCCCGGTCCAATTTTCATCTTCAGCAATGAACAAAATTGGGTGAAACAGGAAATTTCGAAAAAATCAAAATTGAAAAATGAGATTCGAATAATGCCAACGCCAAAAGAGAAGCCGTTCAAGGATTTGTATTTTTCTCAAAAATACTGTAATTCGGTGTTAATTACAGGTAATTAACCAATTAAAAAATTTTGCAAAACATTTTTTTTTTTGGCGCCAATTTTTTTTTTCAAAAATTTTGATATTTTCAGCTCCTTCCTCTACATTTGGCTGGTGGTTAGGATATTTGTCAAAAAATCAGACCAATGTTTATTTTAGAGATATTCGGGAAGTTGAGGATAGTGTAAGTACAGTAATCTTTTTCAAAAAAAAAATTATTTTCAGGTAAAATACCAAATGATCGATGACGATTTTTTCCCTGCGAAATGGAATAAATTGGGCATGATGAGCAATAATGGGACTATTTTTCTGAAGAAAAATGTCTGAAAATCTCGAAATTTTAGTTTGACTTTTTGTGATCTCTAATTTTTTAAAAATAAATTTTTTTGAATTTTTTTTTAATTCCATATTTATACTCATTAGAACCGGTTTTATTTGCTGATTCTAACCTTGCAATTTGTTTTGAGCTAGCTTGAAAATGTGCAAAGTTACGGGCCCAATTGCGCGCCAGTGAGAGACGCAGACACTCTCGCTGTCTGCGTCTCTTCTCGGCACGCGCGCGC</canonical>
            <polymorphic>GAAAAAAACAGATTTTTTTGAAAAACAAAATTTGGTACATTTTTTTCAATCTACTGTAGCTCATTCAATTTTTGTTCAGTTTTTGAAATTTTTGTATTTCTGATTTTATCTATTTTTATCTAACGTTTCGGATTTTTGATTTTGGAGGAAAATTCCAAAAGTTACGGTAGTTTGAAAATTGTTTTTCAAACCTAGCAATATTTATACTCATTTTGAAGCTAATGGTACTTAGATTCAATTTTCCTATTTTTCAAAAAATTTCAGCCAATTTTTTTTCAGATCCCGGTCCAATTTTCATCTTCAGCAATGAACAAAATTGGGTGAAACAGGAAATTTCGAAAAAATCAAAATTGAAAAATGAGATTCGAATAATGCCAACGCCAAAAGAGAAGCCGTTCAAGGATTTGTATTTTTCTCAAAAATACTGTAATTCGGTGTTAATTACAGGTAATTAACCAATTAAAAAATTTTGCAAAACATTTTTTTTTTTGGCGCCAATWTTTTTTTTCAAAAATTTTGATATTTTCAGCTCCTTCCTCTACATTTGGCTGGTGGTTAGGATATTTGTCAAAAAATCAGACCAATGTTTATTTTAGAGATATTCGGGAAGTTGAGGATAGTGTAAGTACAGTAATCTTTTTCAAAAAAAAAATTATTTTCAGGTAAAATACCAAATGATCGATGACGATTTTTTCCCTGCGAAATGGAATAAATTGGGCATGATGAGCAATAATGGGACTATTTTTCTGAAGAAAAATGTCTGAAAATCTCGAAATTTTAGTTTGACTTTTTGTGATCTCTAATTTTTTAAAAATAAATTTTTTTGAATTTTTTTTTAATTCCATATTTATACTCATTAGAACCGGTTTTATTTGCTGATTCTAACCTTGCAATTTGTTTTGAGCTAGCTTGAAAATGTGCAAAGTTACGGGCCCAATTGCGCGCCAGTGAGAGACGCAGACACTCTCGCTGTCTGCGTCTCTTCTCGGCACGCGCGCGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>138 80 65 64 62 61 60 54 44 38 31 28 28 26 25 23 20 20 17 17 16 15 11 11 10 10 10 8 8</canonical_bands>
                <polymorphic_bands>138 80 65 64 62 61 60 54 47 44 38 28 28 26 25 23 20 20 17 17 15 11 11 10 10 10 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAAAATGAGATTCGAATAATG</pcr_primer_p1>
		<pcr_primer_p2>CCCGAATATCTCTAAAATAAACA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TGAAAAATGAGATTCGAATAATGCCAACGCCAAAAGAGAAGCCGTTCAAGGATTTGTATTTTTCTCAAAAATACTGTAATTCGGTGTTAATTACAGGTAATTAACCAATTAAAAAATTTTGCAAAACATTTTTTTTTTTGGCGCCAATTTTTTTTTTCAAAAATTTTGATATTTTCAGCTCCTTCCTCTACATTTGGCTGGTGGTTAGGATATTTGTCAAAAAATCAGACCAATGTTTATTTTAGAGATATTCGGG</canonical_amplicon>
		<polymorphic_amplicon>TGAAAAATGAGATTCGAATAATGCCAACGCCAAAAGAGAAGCCGTTCAAGGATTTGTATTTTTCTCAAAAATACTGTAATTCGGTGTTAATTACAGGTAATTAACCAATTAAAAAATTTTGCAAAACATTTTTTTTTTTGGCGCCAATWTTTTTTTTCAAAAATTTTGATATTTTCAGCTCCTTCCTCTACATTTGGCTGGTGGTTAGGATATTTGTCAAAAAATCAGACCAATGTTTATTTTAGAGATATTCGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38835</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>184545</contig_pos>
        <strand></strand>
        <context>ATTTGTCAAA[A/G]AATCAGACCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCAGCTCCTTCCTCTACATTTGGCTGGTGGTTAGGATATTTGTCAAA</left_flank>
        <right_flank>AATCAGACCAATGTTTATTTTAGAGATATTCGGGAAGTTGAGGATAGTGT</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTCAGTTTTTGAAATTTTTGTATTTCTGATTTTATCTATTTTTATCTAACGTTTCGGATTTTTGATTTTGGAGGAAAATTCCAAAAGTTACGGTAGTTTGAAAATTGTTTTTCAAACCTAGCAATATTTATACTCATTTTGAAGCTAATGGTACTTAGATTCAATTTTCCTATTTTTCAAAAAATTTCAGCCAATTTTTTTTCAGATCCCGGTCCAATTTTCATCTTCAGCAATGAACAAAATTGGGTGAAACAGGAAATTTCGAAAAAATCAAAATTGAAAAATGAGATTCGAATAATGCCAACGCCAAAAGAGAAGCCGTTCAAGGATTTGTATTTTTCTCAAAAATACTGTAATTCGGTGTTAATTACAGGTAATTAACCAATTAAAAAATTTTGCAAAACATTTTTTTTTTTGGCGCCAATTTTTTTTTTCAAAAATTTTGATATTTTCAGCTCCTTCCTCTACATTTGGCTGGTGGTTAGGATATTTGTCAAAAAATCAGACCAATGTTTATTTTAGAGATATTCGGGAAGTTGAGGATAGTGTAAGTACAGTAATCTTTTTCAAAAAAAAAATTATTTTCAGGTAAAATACCAAATGATCGATGACGATTTTTTCCCTGCGAAATGGAATAAATTGGGCATGATGAGCAATAATGGGACTATTTTTCTGAAGAAAAATGTCTGAAAATCTCGAAATTTTAGTTTGACTTTTTGTGATCTCTAATTTTTTAAAAATAAATTTTTTTGAATTTTTTTTTAATTCCATATTTATACTCATTAGAACCGGTTTTATTTGCTGATTCTAACCTTGCAATTTGTTTTGAGCTAGCTTGAAAATGTGCAAAGTTACGGGCCCAATTGCGCGCCAGTGAGAGACGCAGACACTCTCGCTGTCTGCGTCTCTTCTCGGCACGCGCGCGCAAATAGGGGCGTAACTTTGTTCATTTCTGAGCTAGCTCAATGAAACTTTCACTATTAAATTCATCAAAAAAAG</canonical>
            <polymorphic>GTTCAGTTTTTGAAATTTTTGTATTTCTGATTTTATCTATTTTTATCTAACGTTTCGGATTTTTGATTTTGGAGGAAAATTCCAAAAGTTACGGTAGTTTGAAAATTGTTTTTCAAACCTAGCAATATTTATACTCATTTTGAAGCTAATGGTACTTAGATTCAATTTTCCTATTTTTCAAAAAATTTCAGCCAATTTTTTTTCAGATCCCGGTCCAATTTTCATCTTCAGCAATGAACAAAATTGGGTGAAACAGGAAATTTCGAAAAAATCAAAATTGAAAAATGAGATTCGAATAATGCCAACGCCAAAAGAGAAGCCGTTCAAGGATTTGTATTTTTCTCAAAAATACTGTAATTCGGTGTTAATTACAGGTAATTAACCAATTAAAAAATTTTGCAAAACATTTTTTTTTTTGGCGCCAATTTTTTTTTTCAAAAATTTTGATATTTTCAGCTCCTTCCTCTACATTTGGCTGGTGGTTAGGATATTTGTCAAARAATCAGACCAATGTTTATTTTAGAGATATTCGGGAAGTTGAGGATAGTGTAAGTACAGTAATCTTTTTCAAAAAAAAAATTATTTTCAGGTAAAATACCAAATGATCGATGACGATTTTTTCCCTGCGAAATGGAATAAATTGGGCATGATGAGCAATAATGGGACTATTTTTCTGAAGAAAAATGTCTGAAAATCTCGAAATTTTAGTTTGACTTTTTGTGATCTCTAATTTTTTAAAAATAAATTTTTTTGAATTTTTTTTTAATTCCATATTTATACTCATTAGAACCGGTTTTATTTGCTGATTCTAACCTTGCAATTTGTTTTGAGCTAGCTTGAAAATGTGCAAAGTTACGGGCCCAATTGCGCGCCAGTGAGAGACGCAGACACTCTCGCTGTCTGCGTCTCTTCTCGGCACGCGCGCGCAAATAGGGGCGTAACTTTGTTCATTTCTGAGCTAGCTCAATGAAACTTTCACTATTAAATTCATCAAAAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTTTCAGCTCCTTCCTCTAC</pcr_primer_p1>
		<pcr_primer_p2>GATTTTCAGACATTTTTCTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATTTTCAGCTCCTTCCTCTACATTTGGCTGGTGGTTAGGATATTTGTCAAAAAATCAGACCAATGTTTATTTTAGAGATATTCGGGAAGTTGAGGATAGTGTAAGTACAGTAATCTTTTTCAAAAAAAAAATTATTTTCAGGTAAAATACCAAATGATCGATGACGATTTTTTCCCTGCGAAATGGAATAAATTGGGCATGATGAGCAATAATGGGACTATTTTTCTGAAGAAAAATGTCTGAAAATC</canonical_amplicon>
		<polymorphic_amplicon>ATATTTTCAGCTCCTTCCTCTACATTTGGCTGGTGGTTAGGATATTTGTCAAARAATCAGACCAATGTTTATTTTAGAGATATTCGGGAAGTTGAGGATAGTGTAAGTACAGTAATCTTTTTCAAAAAAAAAATTATTTTCAGGTAAAATACCAAATGATCGATGACGATTTTTTCCCTGCGAAATGGAATAAATTGGGCATGATGAGCAATAATGGGACTATTTTTCTGAAGAAAAATGTCTGAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38836</snp_id>
        <super_contig>c013300843.Contig4</super_contig>
        <contig_pos>184584</contig_pos>
        <strand></strand>
        <context>TTCGGGAAGT[T/G]GAGGATAGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TATTTGTCAAAAAATCAGACCAATGTTTATTTTAGAGATATTCGGGAAGT</left_flank>
        <right_flank>GAGGATAGTGTAAGTACAGTAATCTTTTTCAAAAAAAAAATTATTTTCAG</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTATCTAACGTTTCGGATTTTTGATTTTGGAGGAAAATTCCAAAAGTTACGGTAGTTTGAAAATTGTTTTTCAAACCTAGCAATATTTATACTCATTTTGAAGCTAATGGTACTTAGATTCAATTTTCCTATTTTTCAAAAAATTTCAGCCAATTTTTTTTCAGATCCCGGTCCAATTTTCATCTTCAGCAATGAACAAAATTGGGTGAAACAGGAAATTTCGAAAAAATCAAAATTGAAAAATGAGATTCGAATAATGCCAACGCCAAAAGAGAAGCCGTTCAAGGATTTGTATTTTTCTCAAAAATACTGTAATTCGGTGTTAATTACAGGTAATTAACCAATTAAAAAATTTTGCAAAACATTTTTTTTTTTGGCGCCAATTTTTTTTTTCAAAAATTTTGATATTTTCAGCTCCTTCCTCTACATTTGGCTGGTGGTTAGGATATTTGTCAAAAAATCAGACCAATGTTTATTTTAGAGATATTCGGGAAGTTGAGGATAGTGTAAGTACAGTAATCTTTTTCAAAAAAAAAATTATTTTCAGGTAAAATACCAAATGATCGATGACGATTTTTTCCCTGCGAAATGGAATAAATTGGGCATGATGAGCAATAATGGGACTATTTTTCTGAAGAAAAATGTCTGAAAATCTCGAAATTTTAGTTTGACTTTTTGTGATCTCTAATTTTTTAAAAATAAATTTTTTTGAATTTTTTTTTAATTCCATATTTATACTCATTAGAACCGGTTTTATTTGCTGATTCTAACCTTGCAATTTGTTTTGAGCTAGCTTGAAAATGTGCAAAGTTACGGGCCCAATTGCGCGCCAGTGAGAGACGCAGACACTCTCGCTGTCTGCGTCTCTTCTCGGCACGCGCGCGCAAATAGGGGCGTAACTTTGTTCATTTCTGAGCTAGCTCAATGAAACTTTCACTATTAAATTCATCAAAAAAAGACGGTTAGAATGAGTATAAATATCAAATAGTTTGGGGAA</canonical>
            <polymorphic>TTTTTATCTAACGTTTCGGATTTTTGATTTTGGAGGAAAATTCCAAAAGTTACGGTAGTTTGAAAATTGTTTTTCAAACCTAGCAATATTTATACTCATTTTGAAGCTAATGGTACTTAGATTCAATTTTCCTATTTTTCAAAAAATTTCAGCCAATTTTTTTTCAGATCCCGGTCCAATTTTCATCTTCAGCAATGAACAAAATTGGGTGAAACAGGAAATTTCGAAAAAATCAAAATTGAAAAATGAGATTCGAATAATGCCAACGCCAAAAGAGAAGCCGTTCAAGGATTTGTATTTTTCTCAAAAATACTGTAATTCGGTGTTAATTACAGGTAATTAACCAATTAAAAAATTTTGCAAAACATTTTTTTTTTTGGCGCCAATTTTTTTTTTCAAAAATTTTGATATTTTCAGCTCCTTCCTCTACATTTGGCTGGTGGTTAGGATATTTGTCAAAAAATCAGACCAATGTTTATTTTAGAGATATTCGGGAAGTKGAGGATAGTGTAAGTACAGTAATCTTTTTCAAAAAAAAAATTATTTTCAGGTAAAATACCAAATGATCGATGACGATTTTTTCCCTGCGAAATGGAATAAATTGGGCATGATGAGCAATAATGGGACTATTTTTCTGAAGAAAAATGTCTGAAAATCTCGAAATTTTAGTTTGACTTTTTGTGATCTCTAATTTTTTAAAAATAAATTTTTTTGAATTTTTTTTTAATTCCATATTTATACTCATTAGAACCGGTTTTATTTGCTGATTCTAACCTTGCAATTTGTTTTGAGCTAGCTTGAAAATGTGCAAAGTTACGGGCCCAATTGCGCGCCAGTGAGAGACGCAGACACTCTCGCTGTCTGCGTCTCTTCTCGGCACGCGCGCGCAAATAGGGGCGTAACTTTGTTCATTTCTGAGCTAGCTCAATGAAACTTTCACTATTAAATTCATCAAAAAAAGACGGTTAGAATGAGTATAAATATCAAATAGTTTGGGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTTTCAGCTCCTTCCTCTAC</pcr_primer_p1>
		<pcr_primer_p2>GATTTTCAGACATTTTTCTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATTTTCAGCTCCTTCCTCTACATTTGGCTGGTGGTTAGGATATTTGTCAAAAAATCAGACCAATGTTTATTTTAGAGATATTCGGGAAGTTGAGGATAGTGTAAGTACAGTAATCTTTTTCAAAAAAAAAATTATTTTCAGGTAAAATACCAAATGATCGATGACGATTTTTTCCCTGCGAAATGGAATAAATTGGGCATGATGAGCAATAATGGGACTATTTTTCTGAAGAAAAATGTCTGAAAATC</canonical_amplicon>
		<polymorphic_amplicon>ATATTTTCAGCTCCTTCCTCTACATTTGGCTGGTGGTTAGGATATTTGTCAAAAAATCAGACCAATGTTTATTTTAGAGATATTCGGGAAGTKGAGGATAGTGTAAGTACAGTAATCTTTTTCAAAAAAAAAATTATTTTCAGGTAAAATACCAAATGATCGATGACGATTTTTTCCCTGCGAAATGGAATAAATTGGGCATGATGAGCAATAATGGGACTATTTTTCTGAAGAAAAATGTCTGAAAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38844</snp_id>
        <super_contig>c013300887.Contig3</super_contig>
        <contig_pos>27339</contig_pos>
        <strand>+</strand>
        <context>TTTTTTCTCT[A/G]WTTTTTTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCAGCAATTTTTCCATTTCGAAATCCAATTCTCCACATTTTTTCTCT</left_flank>
        <right_flank>ATTTTTTGAAAATTTCTTGTTGGTAATCATTGAAATTATCCAGAGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTAAGAAATTCAGAAAATCAGAAATTCAGAAAATCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAAATGATACTTTTGAAAAAATTACCTGAATCACCAAATCTCTCAATTCCTCTGCTTCTAATTTCAAACTTTCAAAAGTTTTCGACATTTCGAAAAACTTCTCATCCACATTTTCTTTTTCCTTATCCATTTTCCCATTTCCTTATTATAATTTTTCACATTTTTCAGCAATTTTTCCATTTCGAAATCCAATTCTCCACATTTTTTCTCTAATTTTTTGAAAATTTCTTGTTGGTAATCATTGAAATTATCCAGAGAAAAATCCAATTTCCAGAGGGCTTCTTTGCATTTTAAAAGCTCCAATTTGGCGTTTTTCAGGTCTTCATAATGGCTCTGAAAGAATAAAAATTTGAAAAATTCTGAAAAAAAAATTAATAATTTCAGAATTTTCGAATTTCTGAATTTTCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACCTCTGAATTTCAGAATTTCAGAATTTTCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTG</canonical>
            <polymorphic>AAATTAAGAAATTCAGAAAATCAGAAATTCAGAAAATCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAAATGATACTTTTGAAAAAATTACCTGAATCACCAAATCTCTCAATTCCTCTGCTTCTAATTTCAAACTTTCAAAAGTTTTCGACATTTCGAAAAACTTCTCATCCACATTTTCTTTTTCCTTATCCATTTTCCCATTTCCTTATTATAATTTTTCACATTTTTCAGCAATTTTTCCATTTCGAAATCCAATTCTCCACATTTTTTCTCTRATTTTTTGAAAATTTCTTGTTGGTAATCATTGAAATTATCCAGAGAAAAATCCAATTTCCAGAGGGCTTCTTTGCATTTTAAAAGCTCCAATTTGGCGTTTTTCAGGTCTTCATAATGGCTCTGAAAGAATAAAAATTTGAAAAATTCTGAAAAAAAAATTAATAATTTCAGAATTTTCGAATTTCTGAATTTTCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACCTCTGAATTTCAGAATTTCAGAATTTTCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>90 45 36 26 25 23 21 21 20 20 16 16 16 15 14 11 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 1</canonical_bands>
                <polymorphic_bands>90 45 36 32 26 25 23 21 20 20 16 16 16 15 14 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATTTTCCCATTTCCTTAT</pcr_primer_p1>
		<pcr_primer_p2>CCATTATGAAGACCTGAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>205</pcr_amplicon_size>
		<canonical_amplicon>CCATTTTCCCATTTCCTTATTATAATTTTTCACATTTTTCAGCAATTTTTCCATTTCGAAATCCAATTCTCCACATTTTTTCTCTAATTTTTTGAAAATTTCTTGTTGGTAATCATTGAAATTATCCAGAGAAAAATCCAATTTCCAGAGGGCTTCTTTGCATTTTAAAAGCTCCAATTTGGCGTTTTTCAGGTCTTCATAATGG</canonical_amplicon>
		<polymorphic_amplicon>CCATTTTCCCATTTCCTTATTATAATTTTTCACATTTTTCAGCAATTTTTCCATTTCGAAATCCAATTCTCCACATTTTTTCTCTRATTTTTTGAAAATTTCTTGTTGGTAATCATTGAAATTATCCAGAGAAAAATCCAATTTCCAGAGGGCTTCTTTGCATTTTAAAAGCTCCAATTTGGCGTTTTTCAGGTCTTCATAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38845</snp_id>
        <super_contig>c013300887.Contig3</super_contig>
        <contig_pos>27340</contig_pos>
        <strand>+</strand>
        <context>TTTTTCTCTR[A/T]TTTTTTGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCAGCAATTTTTCCATTTCGAAATCCAATTCTCCACATTTTTTCTCTA</left_flank>
        <right_flank>TTTTTTGAAAATTTCTTGTTGGTAATCATTGAAATTATCCAGAGAAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTAAGAAATTCAGAAAATCAGAAATTCAGAAAATCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAAATGATACTTTTGAAAAAATTACCTGAATCACCAAATCTCTCAATTCCTCTGCTTCTAATTTCAAACTTTCAAAAGTTTTCGACATTTCGAAAAACTTCTCATCCACATTTTCTTTTTCCTTATCCATTTTCCCATTTCCTTATTATAATTTTTCACATTTTTCAGCAATTTTTCCATTTCGAAATCCAATTCTCCACATTTTTTCTCTAATTTTTTGAAAATTTCTTGTTGGTAATCATTGAAATTATCCAGAGAAAAATCCAATTTCCAGAGGGCTTCTTTGCATTTTAAAAGCTCCAATTTGGCGTTTTTCAGGTCTTCATAATGGCTCTGAAAGAATAAAAATTTGAAAAATTCTGAAAAAAAAATTAATAATTTCAGAATTTTCGAATTTCTGAATTTTCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACCTCTGAATTTCAGAATTTCAGAATTTTCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGA</canonical>
            <polymorphic>AATTAAGAAATTCAGAAAATCAGAAATTCAGAAAATCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAAATGATACTTTTGAAAAAATTACCTGAATCACCAAATCTCTCAATTCCTCTGCTTCTAATTTCAAACTTTCAAAAGTTTTCGACATTTCGAAAAACTTCTCATCCACATTTTCTTTTTCCTTATCCATTTTCCCATTTCCTTATTATAATTTTTCACATTTTTCAGCAATTTTTCCATTTCGAAATCCAATTCTCCACATTTTTTCTCTAWTTTTTTGAAAATTTCTTGTTGGTAATCATTGAAATTATCCAGAGAAAAATCCAATTTCCAGAGGGCTTCTTTGCATTTTAAAAGCTCCAATTTGGCGTTTTTCAGGTCTTCATAATGGCTCTGAAAGAATAAAAATTTGAAAAATTCTGAAAAAAAAATTAATAATTTCAGAATTTTCGAATTTCTGAATTTTCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACCTCTGAATTTCAGAATTTCAGAATTTTCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>90 45 36 26 25 23 21 21 20 20 16 16 16 15 14 11 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 0</canonical_bands>
                <polymorphic_bands>90 45 36 32 26 25 23 21 20 20 16 16 16 15 14 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 0</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATTTTCCCATTTCCTTAT</pcr_primer_p1>
		<pcr_primer_p2>CCATTATGAAGACCTGAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>205</pcr_amplicon_size>
		<canonical_amplicon>CCATTTTCCCATTTCCTTATTATAATTTTTCACATTTTTCAGCAATTTTTCCATTTCGAAATCCAATTCTCCACATTTTTTCTCTAATTTTTTGAAAATTTCTTGTTGGTAATCATTGAAATTATCCAGAGAAAAATCCAATTTCCAGAGGGCTTCTTTGCATTTTAAAAGCTCCAATTTGGCGTTTTTCAGGTCTTCATAATGG</canonical_amplicon>
		<polymorphic_amplicon>CCATTTTCCCATTTCCTTATTATAATTTTTCACATTTTTCAGCAATTTTTCCATTTCGAAATCCAATTCTCCACATTTTTTCTCTAWTTTTTTGAAAATTTCTTGTTGGTAATCATTGAAATTATCCAGAGAAAAATCCAATTTCCAGAGGGCTTCTTTGCATTTTAAAAGCTCCAATTTGGCGTTTTTCAGGTCTTCATAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38846</snp_id>
        <super_contig>c013300887.Contig3</super_contig>
        <contig_pos>27356</contig_pos>
        <strand>+</strand>
        <context>TGAAAATTTC[C/T]TGTTGGTAAY</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTCGAAATCCAATTCTCCACATTTTTTCTCTAATTTTTTGAAAATTTC</left_flank>
        <right_flank>TGTTGGTAATCATTGAAATTATCCAGAGAAAAATCCAATTTCCAGAGGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCAGAAATTCAGAAAATCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAAATGATACTTTTGAAAAAATTACCTGAATCACCAAATCTCTCAATTCCTCTGCTTCTAATTTCAAACTTTCAAAAGTTTTCGACATTTCGAAAAACTTCTCATCCACATTTTCTTTTTCCTTATCCATTTTCCCATTTCCTTATTATAATTTTTCACATTTTTCAGCAATTTTTCCATTTCGAAATCCAATTCTCCACATTTTTTCTCTAATTTTTTGAAAATTTCTTGTTGGTAATCATTGAAATTATCCAGAGAAAAATCCAATTTCCAGAGGGCTTCTTTGCATTTTAAAAGCTCCAATTTGGCGTTTTTCAGGTCTTCATAATGGCTCTGAAAGAATAAAAATTTGAAAAATTCTGAAAAAAAAATTAATAATTTCAGAATTTTCGAATTTCTGAATTTTCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACCTCTGAATTTCAGAATTTCAGAATTTTCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGA</canonical>
            <polymorphic>AAATCAGAAATTCAGAAAATCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAAATGATACTTTTGAAAAAATTACCTGAATCACCAAATCTCTCAATTCCTCTGCTTCTAATTTCAAACTTTCAAAAGTTTTCGACATTTCGAAAAACTTCTCATCCACATTTTCTTTTTCCTTATCCATTTTCCCATTTCCTTATTATAATTTTTCACATTTTTCAGCAATTTTTCCATTTCGAAATCCAATTCTCCACATTTTTTCTCTAATTTTTTGAAAATTTCYTGTTGGTAATCATTGAAATTATCCAGAGAAAAATCCAATTTCCAGAGGGCTTCTTTGCATTTTAAAAGCTCCAATTTGGCGTTTTTCAGGTCTTCATAATGGCTCTGAAAGAATAAAAATTTGAAAAATTCTGAAAAAAAAATTAATAATTTCAGAATTTTCGAATTTCTGAATTTTCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACCTCTGAATTTCAGAATTTCAGAATTTTCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATTTTCCCATTTCCTTAT</pcr_primer_p1>
		<pcr_primer_p2>CCATTATGAAGACCTGAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>205</pcr_amplicon_size>
		<canonical_amplicon>CCATTTTCCCATTTCCTTATTATAATTTTTCACATTTTTCAGCAATTTTTCCATTTCGAAATCCAATTCTCCACATTTTTTCTCTAATTTTTTGAAAATTTCTTGTTGGTAATCATTGAAATTATCCAGAGAAAAATCCAATTTCCAGAGGGCTTCTTTGCATTTTAAAAGCTCCAATTTGGCGTTTTTCAGGTCTTCATAATGG</canonical_amplicon>
		<polymorphic_amplicon>CCATTTTCCCATTTCCTTATTATAATTTTTCACATTTTTCAGCAATTTTTCCATTTCGAAATCCAATTCTCCACATTTTTTCTCTAATTTTTTGAAAATTTCYTGTTGGTAATCATTGAAATTATCCAGAGAAAAATCCAATTTCCAGAGGGCTTCTTTGCATTTTAAAAGCTCCAATTTGGCGTTTTTCAGGTCTTCATAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38847</snp_id>
        <super_contig>c013300887.Contig3</super_contig>
        <contig_pos>27366</contig_pos>
        <strand>+</strand>
        <context>YTGTTGGTAA[C/T]CATTGAAATW</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAATTCTCCACATTTTTTCTCTAATTTTTTGAAAATTTCTTGTTGGTAA</left_flank>
        <right_flank>CATTGAAATTATCCAGAGAAAAATCCAATTTCCAGAGGGCTTCTTTGCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAGAAAATCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAAATGATACTTTTGAAAAAATTACCTGAATCACCAAATCTCTCAATTCCTCTGCTTCTAATTTCAAACTTTCAAAAGTTTTCGACATTTCGAAAAACTTCTCATCCACATTTTCTTTTTCCTTATCCATTTTCCCATTTCCTTATTATAATTTTTCACATTTTTCAGCAATTTTTCCATTTCGAAATCCAATTCTCCACATTTTTTCTCTAATTTTTTGAAAATTTCTTGTTGGTAATCATTGAAATTATCCAGAGAAAAATCCAATTTCCAGAGGGCTTCTTTGCATTTTAAAAGCTCCAATTTGGCGTTTTTCAGGTCTTCATAATGGCTCTGAAAGAATAAAAATTTGAAAAATTCTGAAAAAAAAATTAATAATTTCAGAATTTTCGAATTTCTGAATTTTCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACCTCTGAATTTCAGAATTTCAGAATTTTCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAT</canonical>
            <polymorphic>TTCAGAAAATCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAAATGATACTTTTGAAAAAATTACCTGAATCACCAAATCTCTCAATTCCTCTGCTTCTAATTTCAAACTTTCAAAAGTTTTCGACATTTCGAAAAACTTCTCATCCACATTTTCTTTTTCCTTATCCATTTTCCCATTTCCTTATTATAATTTTTCACATTTTTCAGCAATTTTTCCATTTCGAAATCCAATTCTCCACATTTTTTCTCTAATTTTTTGAAAATTTCTTGTTGGTAAYCATTGAAATTATCCAGAGAAAAATCCAATTTCCAGAGGGCTTCTTTGCATTTTAAAAGCTCCAATTTGGCGTTTTTCAGGTCTTCATAATGGCTCTGAAAGAATAAAAATTTGAAAAATTCTGAAAAAAAAATTAATAATTTCAGAATTTTCGAATTTCTGAATTTTCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACCTCTGAATTTCAGAATTTCAGAATTTTCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATTTTCCCATTTCCTTAT</pcr_primer_p1>
		<pcr_primer_p2>CCATTATGAAGACCTGAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>205</pcr_amplicon_size>
		<canonical_amplicon>CCATTTTCCCATTTCCTTATTATAATTTTTCACATTTTTCAGCAATTTTTCCATTTCGAAATCCAATTCTCCACATTTTTTCTCTAATTTTTTGAAAATTTCTTGTTGGTAATCATTGAAATTATCCAGAGAAAAATCCAATTTCCAGAGGGCTTCTTTGCATTTTAAAAGCTCCAATTTGGCGTTTTTCAGGTCTTCATAATGG</canonical_amplicon>
		<polymorphic_amplicon>CCATTTTCCCATTTCCTTATTATAATTTTTCACATTTTTCAGCAATTTTTCCATTTCGAAATCCAATTCTCCACATTTTTTCTCTAATTTTTTGAAAATTTCTTGTTGGTAAYCATTGAAATTATCCAGAGAAAAATCCAATTTCCAGAGGGCTTCTTTGCATTTTAAAAGCTCCAATTTGGCGTTTTTCAGGTCTTCATAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38848</snp_id>
        <super_contig>c013300887.Contig3</super_contig>
        <contig_pos>27376</contig_pos>
        <strand>+</strand>
        <context>YCATTGAAAT[A/T]WTCCAGAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACATTTTTTCTCTAATTTTTTGAAAATTTCTTGTTGGTAATCATTGAAAT</left_flank>
        <right_flank>ATCCAGAGAAAAATCCAATTTCCAGAGGGCTTCTTTGCATTTTAAAAGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAAATGATACTTTTGAAAAAATTACCTGAATCACCAAATCTCTCAATTCCTCTGCTTCTAATTTCAAACTTTCAAAAGTTTTCGACATTTCGAAAAACTTCTCATCCACATTTTCTTTTTCCTTATCCATTTTCCCATTTCCTTATTATAATTTTTCACATTTTTCAGCAATTTTTCCATTTCGAAATCCAATTCTCCACATTTTTTCTCTAATTTTTTGAAAATTTCTTGTTGGTAATCATTGAAATTATCCAGAGAAAAATCCAATTTCCAGAGGGCTTCTTTGCATTTTAAAAGCTCCAATTTGGCGTTTTTCAGGTCTTCATAATGGCTCTGAAAGAATAAAAATTTGAAAAATTCTGAAAAAAAAATTAATAATTTCAGAATTTTCGAATTTCTGAATTTTCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACCTCTGAATTTCAGAATTTCAGAATTTTCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTT</canonical>
            <polymorphic>CAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAAATGATACTTTTGAAAAAATTACCTGAATCACCAAATCTCTCAATTCCTCTGCTTCTAATTTCAAACTTTCAAAAGTTTTCGACATTTCGAAAAACTTCTCATCCACATTTTCTTTTTCCTTATCCATTTTCCCATTTCCTTATTATAATTTTTCACATTTTTCAGCAATTTTTCCATTTCGAAATCCAATTCTCCACATTTTTTCTCTAATTTTTTGAAAATTTCTTGTTGGTAATCATTGAAATWATCCAGAGAAAAATCCAATTTCCAGAGGGCTTCTTTGCATTTTAAAAGCTCCAATTTGGCGTTTTTCAGGTCTTCATAATGGCTCTGAAAGAATAAAAATTTGAAAAATTCTGAAAAAAAAATTAATAATTTCAGAATTTTCGAATTTCTGAATTTTCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACCTCTGAATTTCAGAATTTCAGAATTTTCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>90 45 36 26 25 23 21 21 20 20 16 15 14 11 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 5 4</canonical_bands>
                <polymorphic_bands>90 45 43 36 26 25 21 21 20 16 15 14 11 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATTTTCCCATTTCCTTAT</pcr_primer_p1>
		<pcr_primer_p2>CCATTATGAAGACCTGAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>205</pcr_amplicon_size>
		<canonical_amplicon>CCATTTTCCCATTTCCTTATTATAATTTTTCACATTTTTCAGCAATTTTTCCATTTCGAAATCCAATTCTCCACATTTTTTCTCTAATTTTTTGAAAATTTCTTGTTGGTAATCATTGAAATTATCCAGAGAAAAATCCAATTTCCAGAGGGCTTCTTTGCATTTTAAAAGCTCCAATTTGGCGTTTTTCAGGTCTTCATAATGG</canonical_amplicon>
		<polymorphic_amplicon>CCATTTTCCCATTTCCTTATTATAATTTTTCACATTTTTCAGCAATTTTTCCATTTCGAAATCCAATTCTCCACATTTTTTCTCTAATTTTTTGAAAATTTCTTGTTGGTAATCATTGAAATWATCCAGAGAAAAATCCAATTTCCAGAGGGCTTCTTTGCATTTTAAAAGCTCCAATTTGGCGTTTTTCAGGTCTTCATAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38849</snp_id>
        <super_contig>c013300887.Contig3</super_contig>
        <contig_pos>27377</contig_pos>
        <strand>+</strand>
        <context>CATTGAAATW[A/T]TCCAGAGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATTTTTTCTCTAATTTTTTGAAAATTTCTTGTTGGTAATCATTGAAATT</left_flank>
        <right_flank>TCCAGAGAAAAATCCAATTTCCAGAGGGCTTCTTTGCATTTTAAAAGCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAAATGATACTTTTGAAAAAATTACCTGAATCACCAAATCTCTCAATTCCTCTGCTTCTAATTTCAAACTTTCAAAAGTTTTCGACATTTCGAAAAACTTCTCATCCACATTTTCTTTTTCCTTATCCATTTTCCCATTTCCTTATTATAATTTTTCACATTTTTCAGCAATTTTTCCATTTCGAAATCCAATTCTCCACATTTTTTCTCTAATTTTTTGAAAATTTCTTGTTGGTAATCATTGAAATTATCCAGAGAAAAATCCAATTTCCAGAGGGCTTCTTTGCATTTTAAAAGCTCCAATTTGGCGTTTTTCAGGTCTTCATAATGGCTCTGAAAGAATAAAAATTTGAAAAATTCTGAAAAAAAAATTAATAATTTCAGAATTTTCGAATTTCTGAATTTTCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACCTCTGAATTTCAGAATTTCAGAATTTTCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTC</canonical>
            <polymorphic>AGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAATTCAAAAATTCAGAAATTCAGAAATTCAAAAATTCAGAAAATGATACTTTTGAAAAAATTACCTGAATCACCAAATCTCTCAATTCCTCTGCTTCTAATTTCAAACTTTCAAAAGTTTTCGACATTTCGAAAAACTTCTCATCCACATTTTCTTTTTCCTTATCCATTTTCCCATTTCCTTATTATAATTTTTCACATTTTTCAGCAATTTTTCCATTTCGAAATCCAATTCTCCACATTTTTTCTCTAATTTTTTGAAAATTTCTTGTTGGTAATCATTGAAATTWTCCAGAGAAAAATCCAATTTCCAGAGGGCTTCTTTGCATTTTAAAAGCTCCAATTTGGCGTTTTTCAGGTCTTCATAATGGCTCTGAAAGAATAAAAATTTGAAAAATTCTGAAAAAAAAATTAATAATTTCAGAATTTTCGAATTTCTGAATTTTCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAACCTCTGAATTTCAGAATTTCAGAATTTTCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATTTTCCCATTTCCTTAT</pcr_primer_p1>
		<pcr_primer_p2>CCATTATGAAGACCTGAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>205</pcr_amplicon_size>
		<canonical_amplicon>CCATTTTCCCATTTCCTTATTATAATTTTTCACATTTTTCAGCAATTTTTCCATTTCGAAATCCAATTCTCCACATTTTTTCTCTAATTTTTTGAAAATTTCTTGTTGGTAATCATTGAAATTATCCAGAGAAAAATCCAATTTCCAGAGGGCTTCTTTGCATTTTAAAAGCTCCAATTTGGCGTTTTTCAGGTCTTCATAATGG</canonical_amplicon>
		<polymorphic_amplicon>CCATTTTCCCATTTCCTTATTATAATTTTTCACATTTTTCAGCAATTTTTCCATTTCGAAATCCAATTCTCCACATTTTTTCTCTAATTTTTTGAAAATTTCTTGTTGGTAATCATTGAAATTWTCCAGAGAAAAATCCAATTTCCAGAGGGCTTCTTTGCATTTTAAAAGCTCCAATTTGGCGTTTTTCAGGTCTTCATAATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38850</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>70884</contig_pos>
        <strand></strand>
        <context>aatatcaata[G/A]cattttgtca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAGATATCAAAAAGTTTTCAACTGATAAAATATTTATCATAATATCAATA</left_flank>
        <right_flank>CATTTTGTCAGTTGGCAAAATTTTGATATCTTTTATAGAAACCCAGATAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCTGGTCCATTCCACGGACCTCTCGCACATCACATTCACTGGCTACGAGTGCTTCGCAGTCACCTGGACCGTTGGAGCCGCCAAAATGCTCATGATTTTTATTCAAGGAGCTCTGACAATTGAAAGGTTAGAACTTTTTGATTAAATTTCTTATATTCTCTCAAAAAATTTAGAATCATTGACAGGATATACACCATGGTGGCTTCATCAAAACATTTCCAATATCAGGGATACATTTTAAATGTGTTGGTTGTCATTTTTGCGTTTATGATGAATACGTACAGCTACTCGGAGGGTCCAACGACGACTTATAAGCTTCAGTCGTGCTTTATGCAAAGGGACATTCCATTGGATCGAGTACTGTAAGTTTGGTGGTACATTGTGTCGCTTAGTGCCGCTAGGCGGCCGGCAGATCAGTGATCCAATTCAAGCACAATTATCCCATAAGAGATATCAAAAAGTTTTCAACTGATAAAATATTTATCATAATATCAATAGCATTTTGTCAGTTGGCAAAATTTTGATATCTTTTATAGAAACCCAGATAATTAGGGTCAAAGAGGACATACCGTAAACACTCTAATAGAAGGCCACCCTATACTTGCAACTTTAAGCTTAATTACCTCGATTTCTAAAAAAGATATCAGAAAGTGGTCAACTAATAAAATGTTTATCATAATATCAATAACATTTTATTAGTTGACCACTTTCTGGTATCTTTTATAACAACCGAGAAAGATCGGGTCGAAGAAAACAAACTTGAATTGTTATCAAAAACGTTTAAGCTAACTTTAAGGTCCCCAATTTTCCAGATATGCCCTTGGCTTCTATTTCGTGTTATCACTATTTTGTCTAATTGCGAATATTCTAATTATCAGTAGCTTTCGACGAGCAAAACCGAAAAGTTTCAATTTGAAAGTTCGCTTCAACATCCAAGAAGTCAAAAATTCCTCTTTGGCTGTTTCTATCATTTCCGCTGCTCAATTCGTTGCAATGTT</canonical>
            <polymorphic>TCTCTGGTCCATTCCACGGACCTCTCGCACATCACATTCACTGGCTACGAGTGCTTCGCAGTCACCTGGACCGTTGGAGCCGCCAAAATGCTCATGATTTTTATTCAAGGAGCTCTGACAATTGAAAGGTTAGAACTTTTTGATTAAATTTCTTATATTCTCTCAAAAAATTTAGAATCATTGACAGGATATACACCATGGTGGCTTCATCAAAACATTTCCAATATCAGGGATACATTTTAAATGTGTTGGTTGTCATTTTTGCGTTTATGATGAATACGTACAGCTACTCGGAGGGTCCAACGACGACTTATAAGCTTCAGTCGTGCTTTATGCAAAGGGACATTCCATTGGATCGAGTACTGTAAGTTTGGTGGTACATTGTGTCGCTTAGTGCCGCTAGGCGGCCGGCAGATCAGTGATCCAATTCAAGCACAATTATCCCATAAGAGATATCAAAAAGTTTTCAACTGATAAAATATTTATCATAATATCAATARCATTTTGTCAGTTGGCAAAATTTTGATATCTTTTATAGAAACCCAGATAATTAGGGTCAAAGAGGACATACCGTAAACACTCTAATAGAAGGCCACCCTATACTTGCAACTTTAAGCTTAATTACCTCGATTTCTAAAAAAGATATCAGAAAGTGGTCAACTAATAAAATGTTTATCATAATATCAATAACATTTTATTAGTTGACCACTTTCTGGTATCTTTTATAACAACCGAGAAAGATCGGGTCGAAGAAAACAAACTTGAATTGTTATCAAAAACGTTTAAGCTAACTTTAAGGTCCCCAATTTTCCAGATATGCCCTTGGCTTCTATTTCGTGTTATCACTATTTTGTCTAATTGCGAATATTCTAATTATCAGTAGCTTTCGACGAGCAAAACCGAAAAGTTTCAATTTGAAAGTTCGCTTCAACATCCAAGAAGTCAAAAATTCCTCTTTGGCTGTTTCTATCATTTCCGCTGCTCAATTCGTTGCAATGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACATTGTGTCGCTTAGTGC</pcr_primer_p1>
		<pcr_primer_p2>TTTGATAACAATTCAAGTTTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>401</pcr_amplicon_size>
		<canonical_amplicon>GTACATTGTGTCGCTTAGTGCCGCTAGGCGGCCGGCAGATCAGTGATCCAATTCAAGCACAATTATCCCATAAGAGATATCAAAAAGTTTTCAACTGATAAAATATTTATCATAATATCAATAGCATTTTGTCAGTTGGCAAAATTTTGATATCTTTTATAGAAACCCAGATAATTAGGGTCAAAGAGGACATACCGTAAACACTCTAATAGAAGGCCACCCTATACTTGCAACTTTAAGCTTAATTACCTCGATTTCTAAAAAAGATATCAGAAAGTGGTCAACTAATAAAATGTTTATCATAATATCAATAACATTTTATTAGTTGACCACTTTCTGGTATCTTTTATAACAACCGAGAAAGATCGGGTCGAAGAAAACAAACTTGAATTGTTATCAAA</canonical_amplicon>
		<polymorphic_amplicon>GTACATTGTGTCGCTTAGTGCCGCTAGGCGGCCGGCAGATCAGTGATCCAATTCAAGCACAATTATCCCATAAGAGATATCAAAAAGTTTTCAACTGATAAAATATTTATCATAATATCAATARCATTTTGTCAGTTGGCAAAATTTTGATATCTTTTATAGAAACCCAGATAATTAGGGTCAAAGAGGACATACCGTAAACACTCTAATAGAAGGCCACCCTATACTTGCAACTTTAAGCTTAATTACCTCGATTTCTAAAAAAGATATCAGAAAGTGGTCAACTAATAAAATGTTTATCATAATATCAATAACATTTTATTAGTTGACCACTTTCTGGTATCTTTTATAACAACCGAGAAAGATCGGGTCGAAGAAAACAAACTTGAATTGTTATCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38851</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>70928</contig_pos>
        <strand></strand>
        <context>tatagaaacc[C/A]agataattag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TCAATAGCATTTTGTCAGTTGGCAAAATTTTGATATCTTTTATAGAAACC</left_flank>
        <right_flank>AGATAATTAGGGTCAAAGAGGACATACCGTAAACACTCTAATAGAAGGCC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACGAGTGCTTCGCAGTCACCTGGACCGTTGGAGCCGCCAAAATGCTCATGATTTTTATTCAAGGAGCTCTGACAATTGAAAGGTTAGAACTTTTTGATTAAATTTCTTATATTCTCTCAAAAAATTTAGAATCATTGACAGGATATACACCATGGTGGCTTCATCAAAACATTTCCAATATCAGGGATACATTTTAAATGTGTTGGTTGTCATTTTTGCGTTTATGATGAATACGTACAGCTACTCGGAGGGTCCAACGACGACTTATAAGCTTCAGTCGTGCTTTATGCAAAGGGACATTCCATTGGATCGAGTACTGTAAGTTTGGTGGTACATTGTGTCGCTTAGTGCCGCTAGGCGGCCGGCAGATCAGTGATCCAATTCAAGCACAATTATCCCATAAGAGATATCAAAAAGTTTTCAACTGATAAAATATTTATCATAATATCAATAGCATTTTGTCAGTTGGCAAAATTTTGATATCTTTTATAGAAACCCAGATAATTAGGGTCAAAGAGGACATACCGTAAACACTCTAATAGAAGGCCACCCTATACTTGCAACTTTAAGCTTAATTACCTCGATTTCTAAAAAAGATATCAGAAAGTGGTCAACTAATAAAATGTTTATCATAATATCAATAACATTTTATTAGTTGACCACTTTCTGGTATCTTTTATAACAACCGAGAAAGATCGGGTCGAAGAAAACAAACTTGAATTGTTATCAAAAACGTTTAAGCTAACTTTAAGGTCCCCAATTTTCCAGATATGCCCTTGGCTTCTATTTCGTGTTATCACTATTTTGTCTAATTGCGAATATTCTAATTATCAGTAGCTTTCGACGAGCAAAACCGAAAAGTTTCAATTTGAAAGTTCGCTTCAACATCCAAGAAGTCAAAAATTCCTCTTTGGCTGTTTCTATCATTTCCGCTGCTCAATTCGTTGCAATGTTCATTTATGTGTGCTCCAGTTATGTGCTCATTTTCGCAAGATTCG</canonical>
            <polymorphic>CTACGAGTGCTTCGCAGTCACCTGGACCGTTGGAGCCGCCAAAATGCTCATGATTTTTATTCAAGGAGCTCTGACAATTGAAAGGTTAGAACTTTTTGATTAAATTTCTTATATTCTCTCAAAAAATTTAGAATCATTGACAGGATATACACCATGGTGGCTTCATCAAAACATTTCCAATATCAGGGATACATTTTAAATGTGTTGGTTGTCATTTTTGCGTTTATGATGAATACGTACAGCTACTCGGAGGGTCCAACGACGACTTATAAGCTTCAGTCGTGCTTTATGCAAAGGGACATTCCATTGGATCGAGTACTGTAAGTTTGGTGGTACATTGTGTCGCTTAGTGCCGCTAGGCGGCCGGCAGATCAGTGATCCAATTCAAGCACAATTATCCCATAAGAGATATCAAAAAGTTTTCAACTGATAAAATATTTATCATAATATCAATAGCATTTTGTCAGTTGGCAAAATTTTGATATCTTTTATAGAAACCMAGATAATTAGGGTCAAAGAGGACATACCGTAAACACTCTAATAGAAGGCCACCCTATACTTGCAACTTTAAGCTTAATTACCTCGATTTCTAAAAAAGATATCAGAAAGTGGTCAACTAATAAAATGTTTATCATAATATCAATAACATTTTATTAGTTGACCACTTTCTGGTATCTTTTATAACAACCGAGAAAGATCGGGTCGAAGAAAACAAACTTGAATTGTTATCAAAAACGTTTAAGCTAACTTTAAGGTCCCCAATTTTCCAGATATGCCCTTGGCTTCTATTTCGTGTTATCACTATTTTGTCTAATTGCGAATATTCTAATTATCAGTAGCTTTCGACGAGCAAAACCGAAAAGTTTCAATTTGAAAGTTCGCTTCAACATCCAAGAAGTCAAAAATTCCTCTTTGGCTGTTTCTATCATTTCCGCTGCTCAATTCGTTGCAATGTTCATTTATGTGTGCTCCAGTTATGTGCTCATTTTCGCAAGATTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACATTGTGTCGCTTAGTGC</pcr_primer_p1>
		<pcr_primer_p2>TTTGATAACAATTCAAGTTTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>401</pcr_amplicon_size>
		<canonical_amplicon>GTACATTGTGTCGCTTAGTGCCGCTAGGCGGCCGGCAGATCAGTGATCCAATTCAAGCACAATTATCCCATAAGAGATATCAAAAAGTTTTCAACTGATAAAATATTTATCATAATATCAATAGCATTTTGTCAGTTGGCAAAATTTTGATATCTTTTATAGAAACCCAGATAATTAGGGTCAAAGAGGACATACCGTAAACACTCTAATAGAAGGCCACCCTATACTTGCAACTTTAAGCTTAATTACCTCGATTTCTAAAAAAGATATCAGAAAGTGGTCAACTAATAAAATGTTTATCATAATATCAATAACATTTTATTAGTTGACCACTTTCTGGTATCTTTTATAACAACCGAGAAAGATCGGGTCGAAGAAAACAAACTTGAATTGTTATCAAA</canonical_amplicon>
		<polymorphic_amplicon>GTACATTGTGTCGCTTAGTGCCGCTAGGCGGCCGGCAGATCAGTGATCCAATTCAAGCACAATTATCCCATAAGAGATATCAAAAAGTTTTCAACTGATAAAATATTTATCATAATATCAATAGCATTTTGTCAGTTGGCAAAATTTTGATATCTTTTATAGAAACCMAGATAATTAGGGTCAAAGAGGACATACCGTAAACACTCTAATAGAAGGCCACCCTATACTTGCAACTTTAAGCTTAATTACCTCGATTTCTAAAAAAGATATCAGAAAGTGGTCAACTAATAAAATGTTTATCATAATATCAATAACATTTTATTAGTTGACCACTTTCTGGTATCTTTTATAACAACCGAGAAAGATCGGGTCGAAGAAAACAAACTTGAATTGTTATCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38852</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>71033</contig_pos>
        <strand></strand>
        <context>aaagatatca[G/A]aaagtggtca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TATACTTGCAACTTTAAGCTTAATTACCTCGATTTCTAAAAAAGATATCA</left_flank>
        <right_flank>AAAGTGGTCAACTAATAAAATGTTTATCATAATATCAATAACATTTTATT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTATATTCTCTCAAAAAATTTAGAATCATTGACAGGATATACACCATGGTGGCTTCATCAAAACATTTCCAATATCAGGGATACATTTTAAATGTGTTGGTTGTCATTTTTGCGTTTATGATGAATACGTACAGCTACTCGGAGGGTCCAACGACGACTTATAAGCTTCAGTCGTGCTTTATGCAAAGGGACATTCCATTGGATCGAGTACTGTAAGTTTGGTGGTACATTGTGTCGCTTAGTGCCGCTAGGCGGCCGGCAGATCAGTGATCCAATTCAAGCACAATTATCCCATAAGAGATATCAAAAAGTTTTCAACTGATAAAATATTTATCATAATATCAATAGCATTTTGTCAGTTGGCAAAATTTTGATATCTTTTATAGAAACCCAGATAATTAGGGTCAAAGAGGACATACCGTAAACACTCTAATAGAAGGCCACCCTATACTTGCAACTTTAAGCTTAATTACCTCGATTTCTAAAAAAGATATCAGAAAGTGGTCAACTAATAAAATGTTTATCATAATATCAATAACATTTTATTAGTTGACCACTTTCTGGTATCTTTTATAACAACCGAGAAAGATCGGGTCGAAGAAAACAAACTTGAATTGTTATCAAAAACGTTTAAGCTAACTTTAAGGTCCCCAATTTTCCAGATATGCCCTTGGCTTCTATTTCGTGTTATCACTATTTTGTCTAATTGCGAATATTCTAATTATCAGTAGCTTTCGACGAGCAAAACCGAAAAGTTTCAATTTGAAAGTTCGCTTCAACATCCAAGAAGTCAAAAATTCCTCTTTGGCTGTTTCTATCATTTCCGCTGCTCAATTCGTTGCAATGTTCATTTATGTGTGCTCCAGTTATGTGCTCATTTTCGCAAGATTCGGAATTTCAGTCGAATATTTTCATAATATCATTTTGTGTGTTTATGTGAGTCTAGATTCATAATTTTTAAAATTTTTTTGAAATTTCCAGACAATTCCCTATGCTG</canonical>
            <polymorphic>TTCTTATATTCTCTCAAAAAATTTAGAATCATTGACAGGATATACACCATGGTGGCTTCATCAAAACATTTCCAATATCAGGGATACATTTTAAATGTGTTGGTTGTCATTTTTGCGTTTATGATGAATACGTACAGCTACTCGGAGGGTCCAACGACGACTTATAAGCTTCAGTCGTGCTTTATGCAAAGGGACATTCCATTGGATCGAGTACTGTAAGTTTGGTGGTACATTGTGTCGCTTAGTGCCGCTAGGCGGCCGGCAGATCAGTGATCCAATTCAAGCACAATTATCCCATAAGAGATATCAAAAAGTTTTCAACTGATAAAATATTTATCATAATATCAATAGCATTTTGTCAGTTGGCAAAATTTTGATATCTTTTATAGAAACCCAGATAATTAGGGTCAAAGAGGACATACCGTAAACACTCTAATAGAAGGCCACCCTATACTTGCAACTTTAAGCTTAATTACCTCGATTTCTAAAAAAGATATCARAAAGTGGTCAACTAATAAAATGTTTATCATAATATCAATAACATTTTATTAGTTGACCACTTTCTGGTATCTTTTATAACAACCGAGAAAGATCGGGTCGAAGAAAACAAACTTGAATTGTTATCAAAAACGTTTAAGCTAACTTTAAGGTCCCCAATTTTCCAGATATGCCCTTGGCTTCTATTTCGTGTTATCACTATTTTGTCTAATTGCGAATATTCTAATTATCAGTAGCTTTCGACGAGCAAAACCGAAAAGTTTCAATTTGAAAGTTCGCTTCAACATCCAAGAAGTCAAAAATTCCTCTTTGGCTGTTTCTATCATTTCCGCTGCTCAATTCGTTGCAATGTTCATTTATGTGTGCTCCAGTTATGTGCTCATTTTCGCAAGATTCGGAATTTCAGTCGAATATTTTCATAATATCATTTTGTGTGTTTATGTGAGTCTAGATTCATAATTTTTAAAATTTTTTTGAAATTTCCAGACAATTCCCTATGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>396 355 144 105</canonical_bands>
                <polymorphic_bands>751 144 105</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTACATTGTGTCGCTTAGTGC</pcr_primer_p1>
		<pcr_primer_p2>TTTGATAACAATTCAAGTTTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>401</pcr_amplicon_size>
		<canonical_amplicon>GTACATTGTGTCGCTTAGTGCCGCTAGGCGGCCGGCAGATCAGTGATCCAATTCAAGCACAATTATCCCATAAGAGATATCAAAAAGTTTTCAACTGATAAAATATTTATCATAATATCAATAGCATTTTGTCAGTTGGCAAAATTTTGATATCTTTTATAGAAACCCAGATAATTAGGGTCAAAGAGGACATACCGTAAACACTCTAATAGAAGGCCACCCTATACTTGCAACTTTAAGCTTAATTACCTCGATTTCTAAAAAAGATATCAGAAAGTGGTCAACTAATAAAATGTTTATCATAATATCAATAACATTTTATTAGTTGACCACTTTCTGGTATCTTTTATAACAACCGAGAAAGATCGGGTCGAAGAAAACAAACTTGAATTGTTATCAAA</canonical_amplicon>
		<polymorphic_amplicon>GTACATTGTGTCGCTTAGTGCCGCTAGGCGGCCGGCAGATCAGTGATCCAATTCAAGCACAATTATCCCATAAGAGATATCAAAAAGTTTTCAACTGATAAAATATTTATCATAATATCAATAGCATTTTGTCAGTTGGCAAAATTTTGATATCTTTTATAGAAACCCAGATAATTAGGGTCAAAGAGGACATACCGTAAACACTCTAATAGAAGGCCACCCTATACTTGCAACTTTAAGCTTAATTACCTCGATTTCTAAAAAAGATATCARAAAGTGGTCAACTAATAAAATGTTTATCATAATATCAATAACATTTTATTAGTTGACCACTTTCTGGTATCTTTTATAACAACCGAGAAAGATCGGGTCGAAGAAAACAAACTTGAATTGTTATCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38853</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>77203</contig_pos>
        <strand>+</strand>
        <context>CCTTTAAAGG[C/T]TCCTCGGAGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTATGATTTTTTGTGAGGTTTTTAAAGGTACGGCAAGGTCCTTTAAAGG</left_flank>
        <right_flank>TCCTCGGAGGTTCCTCTAAGGTTCTTTTAGAGTTTCTTAAAGATTTCCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCATTTTGCGTAATCTGAAATTTTTTAGTTTGAAAAATTTATGATTTGATCTGTGAAGAATACCGTAAGACCTCTTGTCAACTTTGACTCGAGTTATCTCAGTCCCATTGAGATATATCAAAAAGTTTTCAACTGATAAAATGTTCTTCATCTTATGATGAACATTTTATCAGTCGACCATTTTCTGATATCTCTCATGATACCTGAAATAAATTGGGTCAAAGAGAGCTATTAGAAGAATTACGGTATATTTTGTGAGAAAAGGGGTCAATAGAAACTATAGATGCAAAATAGAGAACCAATCACGATAATTACGATAGATAATTAACAAAACAAAATAAATTGACGATAACGATATTCATGGAATATTTAAACTTACAAATCGTTGAGAATGACCATCTTCTAGGATCCCACTGAATAGAGGAATGAGGGTAATAGGTTCAGGATATTTATGATTTTTTGTGAGGTTTTTAAAGGTACGGCAAGGTCCTTTAAAGGCTCCTCGGAGGTTCCTCTAAGGTTCTTTTAGAGTTTCTTAAAGATTTCCTTAATGTTCCTTGAAGGGTCTATTAAAGATCCTTGAAGGTTCTTTAAGGATTACTTCACGTTCTTCACAGGTCCCTTAAAGGTGAATTAAGAGTTCCTTAAAGATGCTTTTAAAGAACCTTTGAAGGTTCTCTAACGATAAGAGGTCAAAAGTACTTTTTAAAGAAATGAATTGAAAAACCCATGGCCCAGGATTTAGTGATTTCTAGGCCACACTTACTTATTGCGATTTTGTCTCATAAAGTTCTGAATCTTCCTAGCGGCCGCCTGCCTCTTCCGGTGTCTATAACGATAGGCGACCTGGATAGTCGTCGCGGCTCTTTCGCGGAGCAAAGTTGAGTTGGTTTTTGGAACTTGAATGCAAATTGTTTGTCCATCGAGTGTTGGATGTTCTGGGACACTGGCAATCACCGCTTCAACGGCAGCGTTGTTCTCTTCCTTGTCGTTGCGCTG</canonical>
            <polymorphic>TGCATTTTGCGTAATCTGAAATTTTTTAGTTTGAAAAATTTATGATTTGATCTGTGAAGAATACCGTAAGACCTCTTGTCAACTTTGACTCGAGTTATCTCAGTCCCATTGAGATATATCAAAAAGTTTTCAACTGATAAAATGTTCTTCATCTTATGATGAACATTTTATCAGTCGACCATTTTCTGATATCTCTCATGATACCTGAAATAAATTGGGTCAAAGAGAGCTATTAGAAGAATTACGGTATATTTTGTGAGAAAAGGGGTCAATAGAAACTATAGATGCAAAATAGAGAACCAATCACGATAATTACGATAGATAATTAACAAAACAAAATAAATTGACGATAACGATATTCATGGAATATTTAAACTTACAAATCGTTGAGAATGACCATCTTCTAGGATCCCACTGAATAGAGGAATGAGGGTAATAGGTTCAGGATATTTATGATTTTTTGTGAGGTTTTTAAAGGTACGGCAAGGTCCTTTAAAGGYTCCTCGGAGGTTCCTCTAAGGTTCTTTTAGAGTTTCTTAAAGATTTCCTTAATGTTCCTTGAAGGGTCTATTAAAGATCCTTGAAGGTTCTTTAAGGATTACTTCACGTTCTTCACAGGTCCCTTAAAGGTGAATTAAGAGTTCCTTAAAGATGCTTTTAAAGAACCTTTGAAGGTTCTCTAACGATAAGAGGTCAAAAGTACTTTTTAAAGAAATGAATTGAAAAACCCATGGCCCAGGATTTAGTGATTTCTAGGCCACACTTACTTATTGCGATTTTGTCTCATAAAGTTCTGAATCTTCCTAGCGGCCGCCTGCCTCTTCCGGTGTCTATAACGATAGGCGACCTGGATAGTCGTCGCGGCTCTTTCGCGGAGCAAAGTTGAGTTGGTTTTTGGAACTTGAATGCAAATTGTTTGTCCATCGAGTGTTGGATGTTCTGGGACACTGGCAATCACCGCTTCAACGGCAGCGTTGTTCTCTTCCTTGTCGTTGCGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>270 235 229 136 54 53 23</canonical_bands>
                <polymorphic_bands>505 229 136 54 53 23</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAATAGAGGAATGAGGGTAAT</pcr_primer_p1>
		<pcr_primer_p2>TCTTTAAAAGCATCTTTAAGGAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGAATAGAGGAATGAGGGTAATAGGTTCAGGATATTTATGATTTTTTGTGAGGTTTTTAAAGGTACGGCAAGGTCCTTTAAAGGCTCCTCGGAGGTTCCTCTAAGGTTCTTTTAGAGTTTCTTAAAGATTTCCTTAATGTTCCTTGAAGGGTCTATTAAAGATCCTTGAAGGTTCTTTAAGGATTACTTCACGTTCTTCACAGGTCCCTTAAAGGTGAATTAAGAGTTCCTTAAAGATGCTTTTAAAGA</canonical_amplicon>
		<polymorphic_amplicon>CTGAATAGAGGAATGAGGGTAATAGGTTCAGGATATTTATGATTTTTTGTGAGGTTTTTAAAGGTACGGCAAGGTCCTTTAAAGGYTCCTCGGAGGTTCCTCTAAGGTTCTTTTAGAGTTTCTTAAAGATTTCCTTAATGTTCCTTGAAGGGTCTATTAAAGATCCTTGAAGGTTCTTTAAGGATTACTTCACGTTCTTCACAGGTCCCTTAAAGGTGAATTAAGAGTTCCTTAAAGATGCTTTTAAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38854</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>78405</contig_pos>
        <strand>+</strand>
        <context>aattaaaatt[C/T]gattattatt</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTCGGGTTCAATTGTGAGTAAACCATAATTTTTTATAAAATTAAAATT</left_flank>
        <right_flank>GATTATTATTTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAAATTTCTGAAAAATTCCTCACCTTTCTCATTCGAAAATGCTTCTGCATCACAATGGCGGCATTATGAAGTTTCTTCAGATAGCAAAACTGTTTGTATCTTCTATAGCAACCTTGAATCTTCAACGCTGCTCGTCTCTCCAAATCCTCCTGTCGGCGAGTCGTGCTCCGAGCACGGTACACACGATAGGCTCGTTGAATTGTCATCGCCGCTTCGTAAACGTCCCGTTGCTCGTCATCTAAAATATCGATTTATAAATTTTTTGAATTTTCAGATTTTTAGGTCCTTGTGACATTATAAAATTTCAAAATCTCTCATTTTCGAGCCAAGTTATGCCTCTTTAAATTTGGATGACCTAGAAAATCCCGTTAGATTCCTAGGCCACCACTTTCTCCGTACCACAAAATCCTCTATACAACAGATGATCGTCGGCATCGAGTGTGGACCGTTTCGGGTTCAATTGTGAGTAAACCATAATTTTTTATAAAATTAAAATTTGATTATTATTTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCTGAAAAGAGTACTGTAAAGATGGAAGAGGATTACGGTAGATGGGAAAAAAAAACGAAGCAAGAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAAAGCGATTTTTCGAAGAGGAGGGTACTGGGAATTCTACTAGGACTCTTAAAATTCAGAAGCTAAAGAAATATGCCAAAACCGACACAGCTCAACATTTGAGCTATGTGGGGGAGTAGTTCGGAATTCGTTTTGCTTCCCGAACGAAACTGATCTCTCCCTCTCGCTTCTCTACGTCTCTCTACCTCAAAGTGCTCTCTCACAGACAACAATTGTCTCATTTTCCTCCCAATTGACGTCATTGGGTGCGGTGCAAGTTCATAAGAAAAGAAGCAGATGACCCCCAGGAGTTCCGAGGAAAAGTAAGTGTGTGTAGATCAAATTTTGATTAAACAGGTGACCTGGAGATTAGATGATCT</canonical>
            <polymorphic>TCCAAATTTCTGAAAAATTCCTCACCTTTCTCATTCGAAAATGCTTCTGCATCACAATGGCGGCATTATGAAGTTTCTTCAGATAGCAAAACTGTTTGTATCTTCTATAGCAACCTTGAATCTTCAACGCTGCTCGTCTCTCCAAATCCTCCTGTCGGCGAGTCGTGCTCCGAGCACGGTACACACGATAGGCTCGTTGAATTGTCATCGCCGCTTCGTAAACGTCCCGTTGCTCGTCATCTAAAATATCGATTTATAAATTTTTTGAATTTTCAGATTTTTAGGTCCTTGTGACATTATAAAATTTCAAAATCTCTCATTTTCGAGCCAAGTTATGCCTCTTTAAATTTGGATGACCTAGAAAATCCCGTTAGATTCCTAGGCCACCACTTTCTCCGTACCACAAAATCCTCTATACAACAGATGATCGTCGGCATCGAGTGTGGACCGTTTCGGGTTCAATTGTGAGTAAACCATAATTTTTTATAAAATTAAAATTYGATTATTATTTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCTGAAAAGAGTACTGTAAAGATGGAAGAGGATTACGGTAGATGGGAAAAAAAAACGAAGCAAGAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAAAGCGATTTTTCGAAGAGGAGGGTACTGGGAATTCTACTAGGACTCTTAAAATTCAGAAGCTAAAGAAATATGCCAAAACCGACACAGCTCAACATTTGAGCTATGTGGGGGAGTAGTTCGGAATTCGTTTTGCTTCCCGAACGAAACTGATCTCTCCCTCTCGCTTCTCTACGTCTCTCTACCTCAAAGTGCTCTCTCACAGACAACAATTGTCTCATTTTCCTCCCAATTGACGTCATTGGGTGCGGTGCAAGTTCATAAGAAAAGAAGCAGATGACCCCCAGGAGTTCCGAGGAAAAGTAAGTGTGTGTAGATCAAATTTTGATTAAACAGGTGACCTGGAGATTAGATGATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>243 196 178 150 72 43 39 35 20 11 9 4</canonical_bands>
                <polymorphic_bands>328 243 196 72 43 39 35 20 11 9 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCACAAAATCCTCTATACAACA</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCTAGCTACAAGCACTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ACCACAAAATCCTCTATACAACAGATGATCGTCGGCATCGAGTGTGGACCGTTTCGGGTTCAATTGTGAGTAAACCATAATTTTTTATAAAATTAAAATTTGATTATTATTTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCTGAAAAGAGTACTGTAAAGATGGAAGAGGATTACGGTAGATGGGAAAAAAAAACGAAGCAAGAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACCACAAAATCCTCTATACAACAGATGATCGTCGGCATCGAGTGTGGACCGTTTCGGGTTCAATTGTGAGTAAACCATAATTTTTTATAAAATTAAAATTYGATTATTATTTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCTGAAAAGAGTACTGTAAAGATGGAAGAGGATTACGGTAGATGGGAAAAAAAAACGAAGCAAGAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38855</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>78889</contig_pos>
        <strand>+</strand>
        <context>ACAGGTGACC[A/T]GGAGATTAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCGAGGAAAAGTAAGTGTGTGTAGATCAAATTTTGATTAAACAGGTGACC</left_flank>
        <right_flank>GGAGATTAGATGATCTAGGGACTAGTCACATTTTCTGATTGATTGATTGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATAAAATTAAAATTTGATTATTATTTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCTGAAAAGAGTACTGTAAAGATGGAAGAGGATTACGGTAGATGGGAAAAAAAAACGAAGCAAGAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAAAGCGATTTTTCGAAGAGGAGGGTACTGGGAATTCTACTAGGACTCTTAAAATTCAGAAGCTAAAGAAATATGCCAAAACCGACACAGCTCAACATTTGAGCTATGTGGGGGAGTAGTTCGGAATTCGTTTTGCTTCCCGAACGAAACTGATCTCTCCCTCTCGCTTCTCTACGTCTCTCTACCTCAAAGTGCTCTCTCACAGACAACAATTGTCTCATTTTCCTCCCAATTGACGTCATTGGGTGCGGTGCAAGTTCATAAGAAAAGAAGCAGATGACCCCCAGGAGTTCCGAGGAAAAGTAAGTGTGTGTAGATCAAATTTTGATTAAACAGGTGACCTGGAGATTAGATGATCTAGGGACTAGTCACATTTTCTGATTGATTGATTGATAGCGGGGTTGTGAGATTTTGATATTTATAGGAGGATAAGAATGTCAAATTGAAAGTGGAAGATTCTAAGGGAACTTCTGGGGTTTTTGCGTAACTCAGCAGTGTTTATTACAAATGTGCTCCATTGCGAACAAGTATACTGTAGTCCCTACATCATTTTCAGAACTTTTCATTTTCTGAATTTCCGAATTTCTGAATGTTTCAAGTTTTACGGTATTTCCTGGAATTTATTATATTTTGAATTTCTGAGTTTCTGAATTTCCGAATTTTTGAATTTCAAAAGTGAAATTTCTGAATTTCTGAATCTCAGAATTCCTGAATTCCAGAATTTCAGAATTTTAGAATTTCTGAATTTTAGAATTTCAGAATTTCCAAACTTCAGAATTTCGGAATTTCAGGATTTTAAGGTTTCGGAGTTTCAGAATTTCAGAATCTCAGAATCTCAGAATC</canonical>
            <polymorphic>TATAAAATTAAAATTTGATTATTATTTCTCCCAAGTGGTGGCAAGAGGCACGGCTCCACCTGTGCTGAAAAGAGTACTGTAAAGATGGAAGAGGATTACGGTAGATGGGAAAAAAAAACGAAGCAAGAGAACTCATTTTAAGTGCTTGTAGCTAGAAAAAAGCGATTTTTCGAAGAGGAGGGTACTGGGAATTCTACTAGGACTCTTAAAATTCAGAAGCTAAAGAAATATGCCAAAACCGACACAGCTCAACATTTGAGCTATGTGGGGGAGTAGTTCGGAATTCGTTTTGCTTCCCGAACGAAACTGATCTCTCCCTCTCGCTTCTCTACGTCTCTCTACCTCAAAGTGCTCTCTCACAGACAACAATTGTCTCATTTTCCTCCCAATTGACGTCATTGGGTGCGGTGCAAGTTCATAAGAAAAGAAGCAGATGACCCCCAGGAGTTCCGAGGAAAAGTAAGTGTGTGTAGATCAAATTTTGATTAAACAGGTGACCWGGAGATTAGATGATCTAGGGACTAGTCACATTTTCTGATTGATTGATTGATAGCGGGGTTGTGAGATTTTGATATTTATAGGAGGATAAGAATGTCAAATTGAAAGTGGAAGATTCTAAGGGAACTTCTGGGGTTTTTGCGTAACTCAGCAGTGTTTATTACAAATGTGCTCCATTGCGAACAAGTATACTGTAGTCCCTACATCATTTTCAGAACTTTTCATTTTCTGAATTTCCGAATTTCTGAATGTTTCAAGTTTTACGGTATTTCCTGGAATTTATTATATTTTGAATTTCTGAGTTTCTGAATTTCCGAATTTTTGAATTTCAAAAGTGAAATTTCTGAATTTCTGAATCTCAGAATTCCTGAATTCCAGAATTTCAGAATTTTAGAATTTCTGAATTTTAGAATTTCAGAATTTCCAAACTTCAGAATTTCGGAATTTCAGGATTTTAAGGTTTCGGAGTTTCAGAATTTCAGAATCTCAGAATCTCAGAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>442 272 229 57</canonical_bands>
                <polymorphic_bands>442 329 229</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATAAGAAAAGAAGCAGATGAC</pcr_primer_p1>
		<pcr_primer_p2>CATTTGTAATAAACACTGCTGAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCATAAGAAAAGAAGCAGATGACCCCCAGGAGTTCCGAGGAAAAGTAAGTGTGTGTAGATCAAATTTTGATTAAACAGGTGACCTGGAGATTAGATGATCTAGGGACTAGTCACATTTTCTGATTGATTGATTGATAGCGGGGTTGTGAGATTTTGATATTTATAGGAGGATAAGAATGTCAAATTGAAAGTGGAAGATTCTAAGGGAACTTCTGGGGTTTTTGCGTAACTCAGCAGTGTTTATTACAAATG</canonical_amplicon>
		<polymorphic_amplicon>TCATAAGAAAAGAAGCAGATGACCCCCAGGAGTTCCGAGGAAAAGTAAGTGTGTGTAGATCAAATTTTGATTAAACAGGTGACCWGGAGATTAGATGATCTAGGGACTAGTCACATTTTCTGATTGATTGATTGATAGCGGGGTTGTGAGATTTTGATATTTATAGGAGGATAAGAATGTCAAATTGAAAGTGGAAGATTCTAAGGGAACTTCTGGGGTTTTTGCGTAACTCAGCAGTGTTTATTACAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38856</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>102448</contig_pos>
        <strand>+</strand>
        <context>TTTTGGGGTT[C/G]GAAGGCCGCT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGAGGGAGCAGAGGAGATTCGCGTTGCATACATTGAGGGATTTTGGGGTT</left_flank>
        <right_flank>GAAGGCCGCTCATGGAACAGATGATTACGTTGGAGGTAGGAAAATCAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGTATCTCTTGAGCAAACCAAGATAAATTGTGTCAAAGTAGGCAGCTAGGCCGACAGTCGGTGCGTGTATCATAGCTCCGTGACGCAGAACCCCTAGTATCATTCACCATCATTCAACTTAACTATATTTCCAGGTATCCGATCTTCCAACAATCAAAAAATATTTCATCCAACACGCCGACGCCTTCTCCAACCGGTGGCGCAACTTCGTGACCGATTCGATAATGGGTGAGTCATTTTAGCTTAATGATGTCCAGAAAAAAAGTAGGAAGATGTGAAGAAAAATGGAACATAATTGACCCTTTCTTTAGTTCCGTTTCTTCAGAAAATTCCAAAAAAGTGAGCGGTTGTTATAACGCATGGGCGCCTTTGATGCTTCTGCTACTCTATTATTCTTTTTTCTTTCAGAAGGCTCCAATGGGATTGTTCAAATCGATGGGGACAAGTGGAGGGAGCAGAGGAGATTCGCGTTGCATACATTGAGGGATTTTGGGGTTGGAAGGCCGCTCATGGAACAGATGATTACGTTGGAGGTAGGAAAATCAAATGCCGGGAATTTCGGTTATAGCTATGGCAAGATAGAGGAAGCTAGGGCAAGCAAGGGCAAACTGAGGCAAACTAGGGCAAGCAAGGGCAAGATAGAGCAAGATAGAGCAACATGAAGACAAAGTGAGGCTAGATAAGATAAGCTAGGGCAAGATAAGGCTAGATAAGACAAGCTAGTGCAAGTTAGGGCTAGCTAAGGCAAGCTAGGGCTAGATGAGGCTAGCTAAGGCAAGTCAGGACATGATAAGGCCAGCTAAGGCAAGCTAGGACCCCCTTCGAAAGCCCAAATTTAGCAGAGACCCCCAATAACACCCGCCAACTTGCCTCAAATCAAAGATAGGTTTATTTTTCCTCTCAAATCTTTCCCAACCCCCCCCCCCTTTATCGGAACTGTTTCTTTATTGTAATCAGACTCTCGAAACAGGCTGAGACTTTGGAATTGTTTATGATTT</canonical>
            <polymorphic>TCAGTATCTCTTGAGCAAACCAAGATAAATTGTGTCAAAGTAGGCAGCTAGGCCGACAGTCGGTGCGTGTATCATAGCTCCGTGACGCAGAACCCCTAGTATCATTCACCATCATTCAACTTAACTATATTTCCAGGTATCCGATCTTCCAACAATCAAAAAATATTTCATCCAACACGCCGACGCCTTCTCCAACCGGTGGCGCAACTTCGTGACCGATTCGATAATGGGTGAGTCATTTTAGCTTAATGATGTCCAGAAAAAAAGTAGGAAGATGTGAAGAAAAATGGAACATAATTGACCCTTTCTTTAGTTCCGTTTCTTCAGAAAATTCCAAAAAAGTGAGCGGTTGTTATAACGCATGGGCGCCTTTGATGCTTCTGCTACTCTATTATTCTTTTTTCTTTCAGAAGGCTCCAATGGGATTGTTCAAATCGATGGGGACAAGTGGAGGGAGCAGAGGAGATTCGCGTTGCATACATTGAGGGATTTTGGGGTTSGAAGGCCGCTCATGGAACAGATGATTACGTTGGAGGTAGGAAAATCAAATGCCGGGAATTTCGGTTATAGCTATGGCAAGATAGAGGAAGCTAGGGCAAGCAAGGGCAAACTGAGGCAAACTAGGGCAAGCAAGGGCAAGATAGAGCAAGATAGAGCAACATGAAGACAAAGTGAGGCTAGATAAGATAAGCTAGGGCAAGATAAGGCTAGATAAGACAAGCTAGTGCAAGTTAGGGCTAGCTAAGGCAAGCTAGGGCTAGATGAGGCTAGCTAAGGCAAGTCAGGACATGATAAGGCCAGCTAAGGCAAGCTAGGACCCCCTTCGAAAGCCCAAATTTAGCAGAGACCCCCAATAACACCCGCCAACTTGCCTCAAATCAAAGATAGGTTTATTTTTCCTCTCAAATCTTTCCCAACCCCCCCCCCCTTTATCGGAACTGTTTCTTTATTGTAATCAGACTCTCGAAACAGGCTGAGACTTTGGAATTGTTTATGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTTAGTTCCGTTTCTTCAG</pcr_primer_p1>
		<pcr_primer_p2>GGCATTTGATTTTCCTACCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTCTTTAGTTCCGTTTCTTCAGAAAATTCCAAAAAAGTGAGCGGTTGTTATAACGCATGGGCGCCTTTGATGCTTCTGCTACTCTATTATTCTTTTTTCTTTCAGAAGGCTCCAATGGGATTGTTCAAATCGATGGGGACAAGTGGAGGGAGCAGAGGAGATTCGCGTTGCATACATTGAGGGATTTTGGGGTTGGAAGGCCGCTCATGGAACAGATGATTACGTTGGAGGTAGGAAAATCAAATGCC</canonical_amplicon>
		<polymorphic_amplicon>TTCTTTAGTTCCGTTTCTTCAGAAAATTCCAAAAAAGTGAGCGGTTGTTATAACGCATGGGCGCCTTTGATGCTTCTGCTACTCTATTATTCTTTTTTCTTTCAGAAGGCTCCAATGGGATTGTTCAAATCGATGGGGACAAGTGGAGGGAGCAGAGGAGATTCGCGTTGCATACATTGAGGGATTTTGGGGTTSGAAGGCCGCTCATGGAACAGATGATTACGTTGGAGGTAGGAAAATCAAATGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38857</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>102860</contig_pos>
        <strand>+</strand>
        <context>CTCAAATCTT[C/T]CCCAACCCCC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGCCAACTTGCCTCAAATCAAAGATAGGTTTATTTTTCCTCTCAAATCTT</left_flank>
        <right_flank>CCCAACCCCCCCCCCCTTTATCGGAACTGTTTCTTTATTGTAATCAGACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTCCAATGGGATTGTTCAAATCGATGGGGACAAGTGGAGGGAGCAGAGGAGATTCGCGTTGCATACATTGAGGGATTTTGGGGTTGGAAGGCCGCTCATGGAACAGATGATTACGTTGGAGGTAGGAAAATCAAATGCCGGGAATTTCGGTTATAGCTATGGCAAGATAGAGGAAGCTAGGGCAAGCAAGGGCAAACTGAGGCAAACTAGGGCAAGCAAGGGCAAGATAGAGCAAGATAGAGCAACATGAAGACAAAGTGAGGCTAGATAAGATAAGCTAGGGCAAGATAAGGCTAGATAAGACAAGCTAGTGCAAGTTAGGGCTAGCTAAGGCAAGCTAGGGCTAGATGAGGCTAGCTAAGGCAAGTCAGGACATGATAAGGCCAGCTAAGGCAAGCTAGGACCCCCTTCGAAAGCCCAAATTTAGCAGAGACCCCCAATAACACCCGCCAACTTGCCTCAAATCAAAGATAGGTTTATTTTTCCTCTCAAATCTTTCCCAACCCCCCCCCCCTTTATCGGAACTGTTTCTTTATTGTAATCAGACTCTCGAAACAGGCTGAGACTTTGGAATTGTTTATGATTTATAAAAGGGGCCGTCGGCAAGGTAACGTGCGATATAAGGATCCGTCGACAAAAAAAGAGGCTAAGTTAGGTGTCAAATTCCAAGACCATATACCGCGGAGCTCAGTCGGGTGTCATTAAAGAATACATATACCATAGACCATCAAATAGTGTGCCACTCATACCGTCAATATCTCGGTTTCTGTGAGAGATATAAAAAAGTGGTCAACTAATAAAATGTTTATCATAATATCAAAAACATTTCGACAGTTGAAAAAATTTTGATATCTTTTACGGGAACCGAAATTTATGAGTTCAAAGTTGACGATTTGGGTGGCACTTTTTTGTAAGCAGAGCATTAAGTGTATTGATATTTTTGCTTTGAGCCGATTTTTCGCGGTTCCTGTCAAAAAGTGGTCAACTGATAAATTGTT</canonical>
            <polymorphic>GGCTCCAATGGGATTGTTCAAATCGATGGGGACAAGTGGAGGGAGCAGAGGAGATTCGCGTTGCATACATTGAGGGATTTTGGGGTTGGAAGGCCGCTCATGGAACAGATGATTACGTTGGAGGTAGGAAAATCAAATGCCGGGAATTTCGGTTATAGCTATGGCAAGATAGAGGAAGCTAGGGCAAGCAAGGGCAAACTGAGGCAAACTAGGGCAAGCAAGGGCAAGATAGAGCAAGATAGAGCAACATGAAGACAAAGTGAGGCTAGATAAGATAAGCTAGGGCAAGATAAGGCTAGATAAGACAAGCTAGTGCAAGTTAGGGCTAGCTAAGGCAAGCTAGGGCTAGATGAGGCTAGCTAAGGCAAGTCAGGACATGATAAGGCCAGCTAAGGCAAGCTAGGACCCCCTTCGAAAGCCCAAATTTAGCAGAGACCCCCAATAACACCCGCCAACTTGCCTCAAATCAAAGATAGGTTTATTTTTCCTCTCAAATCTTYCCCAACCCCCCCCCCCTTTATCGGAACTGTTTCTTTATTGTAATCAGACTCTCGAAACAGGCTGAGACTTTGGAATTGTTTATGATTTATAAAAGGGGCCGTCGGCAAGGTAACGTGCGATATAAGGATCCGTCGACAAAAAAAGAGGCTAAGTTAGGTGTCAAATTCCAAGACCATATACCGCGGAGCTCAGTCGGGTGTCATTAAAGAATACATATACCATAGACCATCAAATAGTGTGCCACTCATACCGTCAATATCTCGGTTTCTGTGAGAGATATAAAAAAGTGGTCAACTAATAAAATGTTTATCATAATATCAAAAACATTTCGACAGTTGAAAAAATTTTGATATCTTTTACGGGAACCGAAATTTATGAGTTCAAAGTTGACGATTTGGGTGGCACTTTTTTGTAAGCAGAGCATTAAGTGTATTGATATTTTTGCTTTGAGCCGATTTTTCGCGGTTCCTGTCAAAAAGTGGTCAACTGATAAATTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGCCCAAATTTAGCAGAG</pcr_primer_p1>
		<pcr_primer_p2>GACACCTAACTTAGCCTCTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAGCCCAAATTTAGCAGAGACCCCCAATAACACCCGCCAACTTGCCTCAAATCAAAGATAGGTTTATTTTTCCTCTCAAATCTTTCCCAACCCCCCCCCCCTTTATCGGAACTGTTTCTTTATTGTAATCAGACTCTCGAAACAGGCTGAGACTTTGGAATTGTTTATGATTTATAAAAGGGGCCGTCGGCAAGGTAACGTGCGATATAAGGATCCGTCGACAAAAAAAGAGGCTAAGTTAGGTGTC</canonical_amplicon>
		<polymorphic_amplicon>AAAGCCCAAATTTAGCAGAGACCCCCAATAACACCCGCCAACTTGCCTCAAATCAAAGATAGGTTTATTTTTCCTCTCAAATCTTYCCCAACCCCCCCCCCCTTTATCGGAACTGTTTCTTTATTGTAATCAGACTCTCGAAACAGGCTGAGACTTTGGAATTGTTTATGATTTATAAAAGGGGCCGTCGGCAAGGTAACGTGCGATATAAGGATCCGTCGACAAAAAAAGAGGCTAAGTTAGGTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38888</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>214231</contig_pos>
        <strand>+</strand>
        <context>TGACCGGTTG[A/G]TATTCATATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCCAAAAATCCAAATGTATGGAACATTTTAAACATTCCTGACCGGTTG</left_flank>
        <right_flank>TATTCATATTGAAAACTTCATAAATCTTTCGAAAATTTAAGAAATTCGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCTGTGGAAATGGTAAGACATCTGGACAAACAGATGAATAGATAGACAAAAAAAAATTGAGATTTTATATTTGACAGTGTTATACAATTTGATAAAAAGATAGAAAAACTGTCTCTTGAAAAACAATTTTAAGTATCTCACTAGAACGTCCATGGTGATATGGTTTGATAACCTACCTGATAAGGATAAATGCAACAAAGTGTTAAGGAAATCCTTATCATTATTTTTGTATCTAGGTTGATCAACATAGAAAGATCAAAAGATCTGAGTACTCACGATCATACACCTAGAATGGTAAAATGATCCTAAAACTGTTAGAATCTAGGGTTTCTGAAAAAAGTTGAAGAATCTGAAATTGAGATTTCTTGAAATTCCTGAAATCGCTGACTTCTGGGATTTCTGAAATTGCCCAATCTCAGAATTTCCAAAAATTTTTGAAACTTTTAAAATCCAAAAATCCAAATGTATGGAACATTTTAAACATTCCTGACCGGTTGATATTCATATTGAAAACTTCATAAATCTTTCGAAAATTTAAGAAATTCGAAAAACCGAAAAAACCAAATCTATTCAAAAATGCAAATTCCCTCAAACTGAAAAAAATTCTGAAATCCTAAAAATTTACTAACTTTTTGAAAATTAAAAATATCCAAAGTCTGAAAAATCTCAGAATCTTGAGATTCTTGAAATCAAAAAATCACTAAATAATCGAAAATAATCGAACATTTTGAACATCTAAATGGCTCGAAATCTCAGAATATTCTATTTTTAGAATAGTCGAAAAATTCTCAAAACAAAAAAAAATTAAAAAATTTCAAATTCCAGACCGATCTTCCACCATCATCCTCATCAACGAACCAACCGAATTCTCAAAATCTCTACAAAACTTCCTGGCTATTCACTTGCATTGGTATCCTTCTAGGTGCCGCCACGTCACTATCGATCCTGGTGGCGTCGAAGGAATAATGACTAATAAATTCCTTCTTCCTATCTCTTCT</canonical>
            <polymorphic>ATGCTGTGGAAATGGTAAGACATCTGGACAAACAGATGAATAGATAGACAAAAAAAAATTGAGATTTTATATTTGACAGTGTTATACAATTTGATAAAAAGATAGAAAAACTGTCTCTTGAAAAACAATTTTAAGTATCTCACTAGAACGTCCATGGTGATATGGTTTGATAACCTACCTGATAAGGATAAATGCAACAAAGTGTTAAGGAAATCCTTATCATTATTTTTGTATCTAGGTTGATCAACATAGAAAGATCAAAAGATCTGAGTACTCACGATCATACACCTAGAATGGTAAAATGATCCTAAAACTGTTAGAATCTAGGGTTTCTGAAAAAAGTTGAAGAATCTGAAATTGAGATTTCTTGAAATTCCTGAAATCGCTGACTTCTGGGATTTCTGAAATTGCCCAATCTCAGAATTTCCAAAAATTTTTGAAACTTTTAAAATCCAAAAATCCAAATGTATGGAACATTTTAAACATTCCTGACCGGTTGRTATTCATATTGAAAACTTCATAAATCTTTCGAAAATTTAAGAAATTCGAAAAACCGAAAAAACCAAATCTATTCAAAAATGCAAATTCCCTCAAACTGAAAAAAATTCTGAAATCCTAAAAATTTACTAACTTTTTGAAAATTAAAAATATCCAAAGTCTGAAAAATCTCAGAATCTTGAGATTCTTGAAATCAAAAAATCACTAAATAATCGAAAATAATCGAACATTTTGAACATCTAAATGGCTCGAAATCTCAGAATATTCTATTTTTAGAATAGTCGAAAAATTCTCAAAACAAAAAAAAATTAAAAAATTTCAAATTCCAGACCGATCTTCCACCATCATCCTCATCAACGAACCAACCGAATTCTCAAAATCTCTACAAAACTTCCTGGCTATTCACTTGCATTGGTATCCTTCTAGGTGCCGCCACGTCACTATCGATCCTGGTGGCGTCGAAGGAATAATGACTAATAAATTCCTTCTTCCTATCTCTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAGTTGAAGAATCTGAAATTGA</pcr_primer_p1>
		<pcr_primer_p2>ATTTGCATTTTTGAATAGATTTG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAAGTTGAAGAATCTGAAATTGAGATTTCTTGAAATTCCTGAAATCGCTGACTTCTGGGATTTCTGAAATTGCCCAATCTCAGAATTTCCAAAAATTTTTGAAACTTTTAAAATCCAAAAATCCAAATGTATGGAACATTTTAAACATTCCTGACCGGTTGATATTCATATTGAAAACTTCATAAATCTTTCGAAAATTTAAGAAATTCGAAAAACCGAAAAAACCAAATCTATTCAAAAATGCAAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAGTTGAAGAATCTGAAATTGAGATTTCTTGAAATTCCTGAAATCGCTGACTTCTGGGATTTCTGAAATTGCCCAATCTCAGAATTTCCAAAAATTTTTGAAACTTTTAAAATCCAAAAATCCAAATGTATGGAACATTTTAAACATTCCTGACCGGTTGRTATTCATATTGAAAACTTCATAAATCTTTCGAAAATTTAAGAAATTCGAAAAACCGAAAAAACCAAATCTATTCAAAAATGCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38889</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>241251</contig_pos>
        <strand>+</strand>
        <context>AGACCTCAAA[A/G]AACATTCCTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAACTTGCCGAAGACGACTGATACATCCTTATCTTCTAAAGACCTCAAA</left_flank>
        <right_flank>AACATTCCTACCTCCCACCGAGTCCCCTAACTATGCCTACATCCTATATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATCTCAGATTCTCAGAATCTCAGAATCTGAGAATCTGAGAATCTCTGAATCTCAGATTCTCAGAATTGCAAATTCTCAGAATCTCAGAATCTCAGAATCTTGGAATCTAAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCCCAGAAACTCAGAATCTCAGAATTTCAAAATCTCAGAATCTCAGAATCCCAGAATCTCAGAATCTCAGAATTCCAGAATCTCAGAATCCCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAAAATCTCAGAATTTCAGAATCCCGGAATCTCGGAATCTCAGAATCTCGGTATCTCAGAATCCTATAAGCCGAGCTGCGCTGTCGGTCTTTTTACTATTAGATTCAGATCTGTCCACCTCTACCGTAGCCGAACCCCATGATTCTCCACAGAGCAAACTTGCCGAAGACGACTGATACATCCTTATCTTCTAAAGACCTCAAAAAACATTCCTACCTCCCACCGAGTCCCCTAACTATGCCTACATCCTATATCTCCAAAAAATCTCTCTACCAGAATCACGAGTCTCAATCTTAGAGCAACAACATTCCCACCTCATTTGGTGGTCCCTGTTATCTCATCTACCAAATTCCAAAAACACGAATGGGTTACGCCAACACTTGATTTATAGTGATAACCGCGACGGTGGTGGGGATAACAACAGATTTACGATCACCTCCCACTGAGAAGAAGAAGAAGACGGGTCGTAATTTTCCTCTCCTGATGAATTCGGAGGAGGTGAACGATCCGAGAAGACCTACAAGTGTGCCCAAAAGTTACGTAATTCCGAGGGGGTGATTCGATTGATTTGCGATCGACTTACTAGGAGAAGGGTACTAGTTATATGATGACCGTACTCATATGGTGTCATTAGAAGAACAAACTTGGACATATTGGGACAAATTGAGACCTTGATTTTTTGAATTTTAAAATTTCAGGTTTTGG</canonical>
            <polymorphic>AGAATCTCAGATTCTCAGAATCTCAGAATCTGAGAATCTGAGAATCTCTGAATCTCAGATTCTCAGAATTGCAAATTCTCAGAATCTCAGAATCTCAGAATCTTGGAATCTAAGAATCTCAGAATCTCAGAATCTCAGAATCTCAGAATCCCAGAAACTCAGAATCTCAGAATTTCAAAATCTCAGAATCTCAGAATCCCAGAATCTCAGAATCTCAGAATTCCAGAATCTCAGAATCCCAGAATCTCAGAATCTCAGAATTTCAGAATCTCAGAATCTCAGAATCTCAGAATTTCAAAATCTCAGAATTTCAGAATCCCGGAATCTCGGAATCTCAGAATCTCGGTATCTCAGAATCCTATAAGCCGAGCTGCGCTGTCGGTCTTTTTACTATTAGATTCAGATCTGTCCACCTCTACCGTAGCCGAACCCCATGATTCTCCACAGAGCAAACTTGCCGAAGACGACTGATACATCCTTATCTTCTAAAGACCTCAAARAACATTCCTACCTCCCACCGAGTCCCCTAACTATGCCTACATCCTATATCTCCAAAAAATCTCTCTACCAGAATCACGAGTCTCAATCTTAGAGCAACAACATTCCCACCTCATTTGGTGGTCCCTGTTATCTCATCTACCAAATTCCAAAAACACGAATGGGTTACGCCAACACTTGATTTATAGTGATAACCGCGACGGTGGTGGGGATAACAACAGATTTACGATCACCTCCCACTGAGAAGAAGAAGAAGACGGGTCGTAATTTTCCTCTCCTGATGAATTCGGAGGAGGTGAACGATCCGAGAAGACCTACAAGTGTGCCCAAAAGTTACGTAATTCCGAGGGGGTGATTCGATTGATTTGCGATCGACTTACTAGGAGAAGGGTACTAGTTATATGATGACCGTACTCATATGGTGTCATTAGAAGAACAAACTTGGACATATTGGGACAAATTGAGACCTTGATTTTTTGAATTTTAAAATTTCAGGTTTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCAGATCTGTCCACCTCTAC</pcr_primer_p1>
		<pcr_primer_p2>GGAATTTGGTAGATGAGATAACA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTCAGATCTGTCCACCTCTACCGTAGCCGAACCCCATGATTCTCCACAGAGCAAACTTGCCGAAGACGACTGATACATCCTTATCTTCTAAAGACCTCAAAAAACATTCCTACCTCCCACCGAGTCCCCTAACTATGCCTACATCCTATATCTCCAAAAAATCTCTCTACCAGAATCACGAGTCTCAATCTTAGAGCAACAACATTCCCACCTCATTTGGTGGTCCCTGTTATCTCATCTACCAAATTCC</canonical_amplicon>
		<polymorphic_amplicon>ATTCAGATCTGTCCACCTCTACCGTAGCCGAACCCCATGATTCTCCACAGAGCAAACTTGCCGAAGACGACTGATACATCCTTATCTTCTAAAGACCTCAAARAACATTCCTACCTCCCACCGAGTCCCCTAACTATGCCTACATCCTATATCTCCAAAAAATCTCTCTACCAGAATCACGAGTCTCAATCTTAGAGCAACAACATTCCCACCTCATTTGGTGGTCCCTGTTATCTCATCTACCAAATTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38890</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>242219</contig_pos>
        <strand></strand>
        <context>ctaatagaat[T/G]tcccccaaty</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAAT</left_flank>
        <right_flank>TCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTTTTTGAATTTTAAAATTTCAGGTTTTGGGGGTCTGGAAAATGGGAAAGGTCTGAGAATCAGAATATCCAAAATTCAAACATTCCGAGAGAATTCGAAATTCCAAAAAAAAACCTCAAAAACCTGAAAATCCTGAAAAAATTTCAAAAGTACTGAAATTAAGATTTAAAAAAATCGAAATCTCCAAAATTAAGATTTATATATATTTTTTTGGATTTTGGGAGTTCTAGAATTTTTAAGATTTTTCAGATTCTTGAATTTTTGAGTTCTTTAAACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCAGATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTAGAATTAGTTTGAAGACAGTTTTCCTAGTCTTCTAGTGCTGGCCAAAAAAACCCAATTTGCAAAAAATTCCCGGCCAACAAAAACAACAAAACTTGTACACTTGAAAACACACAAACTGTTTTTTTCTAGTGTTCGAGACCATTGCTATCGAGTGTGTGAAAACCTATACAACAAAAAAGTGACCAGTTCCACGTATCTACCATATATACATATGAATAAGGGGGGGGGGGGGGGATGCATGACCATCCAACAACCACTATATATGATTATATTATATCATCAGCCAAAAATGTTAT</canonical>
            <polymorphic>GATTTTTTGAATTTTAAAATTTCAGGTTTTGGGGGTCTGGAAAATGGGAAAGGTCTGAGAATCAGAATATCCAAAATTCAAACATTCCGAGAGAATTCGAAATTCCAAAAAAAAACCTCAAAAACCTGAAAATCCTGAAAAAATTTCAAAAGTACTGAAATTAAGATTTAAAAAAATCGAAATCTCCAAAATTAAGATTTATATATATTTTTTTGGATTTTGGGAGTTCTAGAATTTTTAAGATTTTTCAGATTCTTGAATTTTTGAGTTCTTTAAACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCAGATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATKTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTAGAATTAGTTTGAAGACAGTTTTCCTAGTCTTCTAGTGCTGGCCAAAAAAACCCAATTTGCAAAAAATTCCCGGCCAACAAAAACAACAAAACTTGTACACTTGAAAACACACAAACTGTTTTTTTCTAGTGTTCGAGACCATTGCTATCGAGTGTGTGAAAACCTATACAACAAAAAAGTGACCAGTTCCACGTATCTACCATATATACATATGAATAAGGGGGGGGGGGGGGGATGCATGACCATCCAACAACCACTATATATGATTATATTATATCATCAGCCAAAAATGTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>272 232 91 68 61 57 53 41 36 26 19 13 9 8 7 7</canonical_bands>
                <polymorphic_bands>308 232 91 68 61 57 53 41 26 19 13 9 8 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>232 209 61 57 53 52 43 41 35 33 31 28 26 19 17 13 11 9 8 8 7 7</canonical_bands>
                <polymorphic_bands>237 232 61 57 53 52 43 41 35 33 31 26 19 17 13 11 9 8 8 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAATGAAAAATGTAGAAATCAA</pcr_primer_p1>
		<pcr_primer_p2>TACAGGCTGATACACTGAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>CAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTA</canonical_amplicon>
		<polymorphic_amplicon>CAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATKTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38891</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>242229</contig_pos>
        <strand></strand>
        <context>ktcccccaat[C/T]cgttaacttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAAT</left_flank>
        <right_flank>CGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTAAAATTTCAGGTTTTGGGGGTCTGGAAAATGGGAAAGGTCTGAGAATCAGAATATCCAAAATTCAAACATTCCGAGAGAATTCGAAATTCCAAAAAAAAACCTCAAAAACCTGAAAATCCTGAAAAAATTTCAAAAGTACTGAAATTAAGATTTAAAAAAATCGAAATCTCCAAAATTAAGATTTATATATATTTTTTTGGATTTTGGGAGTTCTAGAATTTTTAAGATTTTTCAGATTCTTGAATTTTTGAGTTCTTTAAACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCAGATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTAGAATTAGTTTGAAGACAGTTTTCCTAGTCTTCTAGTGCTGGCCAAAAAAACCCAATTTGCAAAAAATTCCCGGCCAACAAAAACAACAAAACTTGTACACTTGAAAACACACAAACTGTTTTTTTCTAGTGTTCGAGACCATTGCTATCGAGTGTGTGAAAACCTATACAACAAAAAAGTGACCAGTTCCACGTATCTACCATATATACATATGAATAAGGGGGGGGGGGGGGGATGCATGACCATCCAACAACCACTATATATGATTATATTATATCATCAGCCAAAAATGTTATGTTGATAAGT</canonical>
            <polymorphic>ATTTTAAAATTTCAGGTTTTGGGGGTCTGGAAAATGGGAAAGGTCTGAGAATCAGAATATCCAAAATTCAAACATTCCGAGAGAATTCGAAATTCCAAAAAAAAACCTCAAAAACCTGAAAATCCTGAAAAAATTTCAAAAGTACTGAAATTAAGATTTAAAAAAATCGAAATCTCCAAAATTAAGATTTATATATATTTTTTTGGATTTTGGGAGTTCTAGAATTTTTAAGATTTTTCAGATTCTTGAATTTTTGAGTTCTTTAAACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCAGATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATYCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTAGAATTAGTTTGAAGACAGTTTTCCTAGTCTTCTAGTGCTGGCCAAAAAAACCCAATTTGCAAAAAATTCCCGGCCAACAAAAACAACAAAACTTGTACACTTGAAAACACACAAACTGTTTTTTTCTAGTGTTCGAGACCATTGCTATCGAGTGTGTGAAAACCTATACAACAAAAAAGTGACCAGTTCCACGTATCTACCATATATACATATGAATAAGGGGGGGGGGGGGGGATGCATGACCATCCAACAACCACTATATATGATTATATTATATCATCAGCCAAAAATGTTATGTTGATAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATGAAAAATGTAGAAATCAA</pcr_primer_p1>
		<pcr_primer_p2>TACAGGCTGATACACTGAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>CAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTA</canonical_amplicon>
		<polymorphic_amplicon>CAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATYCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38892</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>242279</contig_pos>
        <strand></strand>
        <context>atatcaaaaa[G/A]taaayaactk</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAA</left_flank>
        <right_flank>TAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAGAATATCCAAAATTCAAACATTCCGAGAGAATTCGAAATTCCAAAAAAAAACCTCAAAAACCTGAAAATCCTGAAAAAATTTCAAAAGTACTGAAATTAAGATTTAAAAAAATCGAAATCTCCAAAATTAAGATTTATATATATTTTTTTGGATTTTGGGAGTTCTAGAATTTTTAAGATTTTTCAGATTCTTGAATTTTTGAGTTCTTTAAACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCAGATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTAGAATTAGTTTGAAGACAGTTTTCCTAGTCTTCTAGTGCTGGCCAAAAAAACCCAATTTGCAAAAAATTCCCGGCCAACAAAAACAACAAAACTTGTACACTTGAAAACACACAAACTGTTTTTTTCTAGTGTTCGAGACCATTGCTATCGAGTGTGTGAAAACCTATACAACAAAAAAGTGACCAGTTCCACGTATCTACCATATATACATATGAATAAGGGGGGGGGGGGGGGATGCATGACCATCCAACAACCACTATATATGATTATATTATATCATCAGCCAAAAATGTTATGTTGATAAGTTTGTGTGCTTTACGGGACGACGGGAAAAGGGCTTTTGAAGTTGGGGGTCC</canonical>
            <polymorphic>ATCAGAATATCCAAAATTCAAACATTCCGAGAGAATTCGAAATTCCAAAAAAAAACCTCAAAAACCTGAAAATCCTGAAAAAATTTCAAAAGTACTGAAATTAAGATTTAAAAAAATCGAAATCTCCAAAATTAAGATTTATATATATTTTTTTGGATTTTGGGAGTTCTAGAATTTTTAAGATTTTTCAGATTCTTGAATTTTTGAGTTCTTTAAACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCAGATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAARTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTAGAATTAGTTTGAAGACAGTTTTCCTAGTCTTCTAGTGCTGGCCAAAAAAACCCAATTTGCAAAAAATTCCCGGCCAACAAAAACAACAAAACTTGTACACTTGAAAACACACAAACTGTTTTTTTCTAGTGTTCGAGACCATTGCTATCGAGTGTGTGAAAACCTATACAACAAAAAAGTGACCAGTTCCACGTATCTACCATATATACATATGAATAAGGGGGGGGGGGGGGGATGCATGACCATCCAACAACCACTATATATGATTATATTATATCATCAGCCAAAAATGTTATGTTGATAAGTTTGTGTGCTTTACGGGACGACGGGAAAAGGGCTTTTGAAGTTGGGGGTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>423 259 191 48 48 31</canonical_bands>
                <polymorphic_bands>423 259 191 96 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAATGAAAAATGTAGAAATCAA</pcr_primer_p1>
		<pcr_primer_p2>TACAGGCTGATACACTGAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>CAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTA</canonical_amplicon>
		<polymorphic_amplicon>CAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAARTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38893</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>242284</contig_pos>
        <strand></strand>
        <context>aaaaartaaa[C/T]aactkataaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAA</left_flank>
        <right_flank>AACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATATCCAAAATTCAAACATTCCGAGAGAATTCGAAATTCCAAAAAAAAACCTCAAAAACCTGAAAATCCTGAAAAAATTTCAAAAGTACTGAAATTAAGATTTAAAAAAATCGAAATCTCCAAAATTAAGATTTATATATATTTTTTTGGATTTTGGGAGTTCTAGAATTTTTAAGATTTTTCAGATTCTTGAATTTTTGAGTTCTTTAAACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCAGATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTAGAATTAGTTTGAAGACAGTTTTCCTAGTCTTCTAGTGCTGGCCAAAAAAACCCAATTTGCAAAAAATTCCCGGCCAACAAAAACAACAAAACTTGTACACTTGAAAACACACAAACTGTTTTTTTCTAGTGTTCGAGACCATTGCTATCGAGTGTGTGAAAACCTATACAACAAAAAAGTGACCAGTTCCACGTATCTACCATATATACATATGAATAAGGGGGGGGGGGGGGGATGCATGACCATCCAACAACCACTATATATGATTATATTATATCATCAGCCAAAAATGTTATGTTGATAAGTTTGTGTGCTTTACGGGACGACGGGAAAAGGGCTTTTGAAGTTGGGGGTCCGACGA</canonical>
            <polymorphic>AATATCCAAAATTCAAACATTCCGAGAGAATTCGAAATTCCAAAAAAAAACCTCAAAAACCTGAAAATCCTGAAAAAATTTCAAAAGTACTGAAATTAAGATTTAAAAAAATCGAAATCTCCAAAATTAAGATTTATATATATTTTTTTGGATTTTGGGAGTTCTAGAATTTTTAAGATTTTTCAGATTCTTGAATTTTTGAGTTCTTTAAACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCAGATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAAYAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTAGAATTAGTTTGAAGACAGTTTTCCTAGTCTTCTAGTGCTGGCCAAAAAAACCCAATTTGCAAAAAATTCCCGGCCAACAAAAACAACAAAACTTGTACACTTGAAAACACACAAACTGTTTTTTTCTAGTGTTCGAGACCATTGCTATCGAGTGTGTGAAAACCTATACAACAAAAAAGTGACCAGTTCCACGTATCTACCATATATACATATGAATAAGGGGGGGGGGGGGGGATGCATGACCATCCAACAACCACTATATATGATTATATTATATCATCAGCCAAAAATGTTATGTTGATAAGTTTGTGTGCTTTACGGGACGACGGGAAAAGGGCTTTTGAAGTTGGGGGTCCGACGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>418 264 191 48 48 31</canonical_bands>
                <polymorphic_bands>418 264 191 96 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAATGAAAAATGTAGAAATCAA</pcr_primer_p1>
		<pcr_primer_p2>TACAGGCTGATACACTGAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>CAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTA</canonical_amplicon>
		<polymorphic_amplicon>CAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAAYAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38894</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>242289</contig_pos>
        <strand></strand>
        <context>rtaaayaact[G/T]ataaaatgtt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACT</left_flank>
        <right_flank>ATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAAATTCAAACATTCCGAGAGAATTCGAAATTCCAAAAAAAAACCTCAAAAACCTGAAAATCCTGAAAAAATTTCAAAAGTACTGAAATTAAGATTTAAAAAAATCGAAATCTCCAAAATTAAGATTTATATATATTTTTTTGGATTTTGGGAGTTCTAGAATTTTTAAGATTTTTCAGATTCTTGAATTTTTGAGTTCTTTAAACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCAGATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTAGAATTAGTTTGAAGACAGTTTTCCTAGTCTTCTAGTGCTGGCCAAAAAAACCCAATTTGCAAAAAATTCCCGGCCAACAAAAACAACAAAACTTGTACACTTGAAAACACACAAACTGTTTTTTTCTAGTGTTCGAGACCATTGCTATCGAGTGTGTGAAAACCTATACAACAAAAAAGTGACCAGTTCCACGTATCTACCATATATACATATGAATAAGGGGGGGGGGGGGGGATGCATGACCATCCAACAACCACTATATATGATTATATTATATCATCAGCCAAAAATGTTATGTTGATAAGTTTGTGTGCTTTACGGGACGACGGGAAAAGGGCTTTTGAAGTTGGGGGTCCGACGATTTTT</canonical>
            <polymorphic>CCAAAATTCAAACATTCCGAGAGAATTCGAAATTCCAAAAAAAAACCTCAAAAACCTGAAAATCCTGAAAAAATTTCAAAAGTACTGAAATTAAGATTTAAAAAAATCGAAATCTCCAAAATTAAGATTTATATATATTTTTTTGGATTTTGGGAGTTCTAGAATTTTTAAGATTTTTCAGATTCTTGAATTTTTGAGTTCTTTAAACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCAGATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTKATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTAGAATTAGTTTGAAGACAGTTTTCCTAGTCTTCTAGTGCTGGCCAAAAAAACCCAATTTGCAAAAAATTCCCGGCCAACAAAAACAACAAAACTTGTACACTTGAAAACACACAAACTGTTTTTTTCTAGTGTTCGAGACCATTGCTATCGAGTGTGTGAAAACCTATACAACAAAAAAGTGACCAGTTCCACGTATCTACCATATATACATATGAATAAGGGGGGGGGGGGGGGATGCATGACCATCCAACAACCACTATATATGATTATATTATATCATCAGCCAAAAATGTTATGTTGATAAGTTTGTGTGCTTTACGGGACGACGGGAAAAGGGCTTTTGAAGTTGGGGGTCCGACGATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATGAAAAATGTAGAAATCAA</pcr_primer_p1>
		<pcr_primer_p2>TACAGGCTGATACACTGAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>CAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTA</canonical_amplicon>
		<polymorphic_amplicon>CAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTKATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38895</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>242310</contig_pos>
        <strand></strand>
        <context>tatcataata[T/A]caccaacatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATA</left_flank>
        <right_flank>CACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATTCGAAATTCCAAAAAAAAACCTCAAAAACCTGAAAATCCTGAAAAAATTTCAAAAGTACTGAAATTAAGATTTAAAAAAATCGAAATCTCCAAAATTAAGATTTATATATATTTTTTTGGATTTTGGGAGTTCTAGAATTTTTAAGATTTTTCAGATTCTTGAATTTTTGAGTTCTTTAAACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCAGATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTAGAATTAGTTTGAAGACAGTTTTCCTAGTCTTCTAGTGCTGGCCAAAAAAACCCAATTTGCAAAAAATTCCCGGCCAACAAAAACAACAAAACTTGTACACTTGAAAACACACAAACTGTTTTTTTCTAGTGTTCGAGACCATTGCTATCGAGTGTGTGAAAACCTATACAACAAAAAAGTGACCAGTTCCACGTATCTACCATATATACATATGAATAAGGGGGGGGGGGGGGGATGCATGACCATCCAACAACCACTATATATGATTATATTATATCATCAGCCAAAAATGTTATGTTGATAAGTTTGTGTGCTTTACGGGACGACGGGAAAAGGGCTTTTGAAGTTGGGGGTCCGACGATTTTTATGGTCGGGAATGTTCTATAA</canonical>
            <polymorphic>AGAATTCGAAATTCCAAAAAAAAACCTCAAAAACCTGAAAATCCTGAAAAAATTTCAAAAGTACTGAAATTAAGATTTAAAAAAATCGAAATCTCCAAAATTAAGATTTATATATATTTTTTTGGATTTTGGGAGTTCTAGAATTTTTAAGATTTTTCAGATTCTTGAATTTTTGAGTTCTTTAAACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCAGATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATAWCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTAGAATTAGTTTGAAGACAGTTTTCCTAGTCTTCTAGTGCTGGCCAAAAAAACCCAATTTGCAAAAAATTCCCGGCCAACAAAAACAACAAAACTTGTACACTTGAAAACACACAAACTGTTTTTTTCTAGTGTTCGAGACCATTGCTATCGAGTGTGTGAAAACCTATACAACAAAAAAGTGACCAGTTCCACGTATCTACCATATATACATATGAATAAGGGGGGGGGGGGGGGATGCATGACCATCCAACAACCACTATATATGATTATATTATATCATCAGCCAAAAATGTTATGTTGATAAGTTTGTGTGCTTTACGGGACGACGGGAAAAGGGCTTTTGAAGTTGGGGGTCCGACGATTTTTATGGTCGGGAATGTTCTATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATGAAAAATGTAGAAATCAA</pcr_primer_p1>
		<pcr_primer_p2>TACAGGCTGATACACTGAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>CAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTA</canonical_amplicon>
		<polymorphic_amplicon>CAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATAWCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38896</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>242322</contig_pos>
        <strand></strand>
        <context>accaacattt[T/G]tttagttgac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTT</left_flank>
        <right_flank>TTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAAAAAAAAACCTCAAAAACCTGAAAATCCTGAAAAAATTTCAAAAGTACTGAAATTAAGATTTAAAAAAATCGAAATCTCCAAAATTAAGATTTATATATATTTTTTTGGATTTTGGGAGTTCTAGAATTTTTAAGATTTTTCAGATTCTTGAATTTTTGAGTTCTTTAAACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCAGATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTAGAATTAGTTTGAAGACAGTTTTCCTAGTCTTCTAGTGCTGGCCAAAAAAACCCAATTTGCAAAAAATTCCCGGCCAACAAAAACAACAAAACTTGTACACTTGAAAACACACAAACTGTTTTTTTCTAGTGTTCGAGACCATTGCTATCGAGTGTGTGAAAACCTATACAACAAAAAAGTGACCAGTTCCACGTATCTACCATATATACATATGAATAAGGGGGGGGGGGGGGGATGCATGACCATCCAACAACCACTATATATGATTATATTATATCATCAGCCAAAAATGTTATGTTGATAAGTTTGTGTGCTTTACGGGACGACGGGAAAAGGGCTTTTGAAGTTGGGGGTCCGACGATTTTTATGGTCGGGAATGTTCTATAATTTATTACCCAT</canonical>
            <polymorphic>TCCAAAAAAAAACCTCAAAAACCTGAAAATCCTGAAAAAATTTCAAAAGTACTGAAATTAAGATTTAAAAAAATCGAAATCTCCAAAATTAAGATTTATATATATTTTTTTGGATTTTGGGAGTTCTAGAATTTTTAAGATTTTTCAGATTCTTGAATTTTTGAGTTCTTTAAACTTCAGGGTTTCTTTAAATTGCGATTCATGGGATTTTTTGGTTTTTAAAAATTCTGAAATCGAAAAAAAGGTCGATCGCAAAATACCCCATAACTGGCTTGAAATTCAAAATTTCCAGCCAGATCAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTKTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTAGAATTAGTTTGAAGACAGTTTTCCTAGTCTTCTAGTGCTGGCCAAAAAAACCCAATTTGCAAAAAATTCCCGGCCAACAAAAACAACAAAACTTGTACACTTGAAAACACACAAACTGTTTTTTTCTAGTGTTCGAGACCATTGCTATCGAGTGTGTGAAAACCTATACAACAAAAAAGTGACCAGTTCCACGTATCTACCATATATACATATGAATAAGGGGGGGGGGGGGGGATGCATGACCATCCAACAACCACTATATATGATTATATTATATCATCAGCCAAAAATGTTATGTTGATAAGTTTGTGTGCTTTACGGGACGACGGGAAAAGGGCTTTTGAAGTTGGGGGTCCGACGATTTTTATGGTCGGGAATGTTCTATAATTTATTACCCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAATGAAAAATGTAGAAATCAA</pcr_primer_p1>
		<pcr_primer_p2>TACAGGCTGATACACTGAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>CAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTTTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTA</canonical_amplicon>
		<polymorphic_amplicon>CAAAATGAAAAATGTAGAAATCAAGAAGCTCTATAAAATGATGTTAAATTTAAACTGAAAATTCAAAAATTGATCTACCGTAAACACTCTAATAGAATTTCCCCCAATCCGTTAACTTTGAGCCCATATATCTCGGTCCCTGTAAAAGATATCAAAAAGTAAACAACTGATAAAATGTTTATCATAATATCACCAACATTTKTTTAGTTGACTACTTTTTGATATCTTTTATAGGAATCGAGATAAATCAGCTCAAAGTTTATAGTTAAGGAAGGGAAGCATTCTTCAGTGTATCAGCCTGTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38897</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>245011</contig_pos>
        <strand>+</strand>
        <context>GGTAATTAGR[A/G]GGATTTTTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGA</left_flank>
        <right_flank>GGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCCACTTGGAAGATCCTAGACCACCTTGAACTTACGAGATAATTTGAAAGTTTCATATGCATTTTTAGAAGCTTCTGGACCGTTTGAAAGCTCCTTGGCCACTAAATTCTTGTAAAAAAACAACAAATTTAGCAAGAAATAATGATGTTTTCGAAGGGAAGCATTCTTAGCTTCTCATTGTTTCCAACAAGAGACTCTTTCTCCCCAGTAGTAGGCCTTGTTCTTTCCGGATACAAGCGGATATCATGAATTTATTGTTCTCTTCTTCTTCTTCTTCTTTTTGTTATTGTTGTCCCTCTCTCTCACAGAGAAAAAGAGAAAAAGAGAAAATAATAGGAGTCGGCTGCTCTTTTTGACCCCCCCCCCCCCCTATCCCACTTTTTGTTTAGATGCCTCGAGTATTGCCTAATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGTTTCGAGACATTAGGGATTTTCGATAGTTTTAGGTTTTTTTGGGATTTTTATGATTTCAGGATTTTCGGTTTTTTTTGGGATCGTTAGAAATTTTAGGGCTTCAGAATTTTCAAAATTTCTGCGATTTTCAGAATTTAAGGGTTTTTGGGGTTTTTTCGAATTCTACTGTTTTTGAGACTTCATGGATTTTCAGGATTTTTTTTAGATTTTTGGAATTTCAAAGTTTCCAGGATACCCAGATTTTTGGGTTTTAAAGTTTCTGGGATTTTTGAAGTTTTTGGGCCTTTTGTGATTTCGGCATTTCTAGAATTTTTGGTATTTTTGGGATTATTAGATTTATAGGATAATTGAGAATGTT</canonical>
            <polymorphic>GGCCACTTGGAAGATCCTAGACCACCTTGAACTTACGAGATAATTTGAAAGTTTCATATGCATTTTTAGAAGCTTCTGGACCGTTTGAAAGCTCCTTGGCCACTAAATTCTTGTAAAAAAACAACAAATTTAGCAAGAAATAATGATGTTTTCGAAGGGAAGCATTCTTAGCTTCTCATTGTTTCCAACAAGAGACTCTTTCTCCCCAGTAGTAGGCCTTGTTCTTTCCGGATACAAGCGGATATCATGAATTTATTGTTCTCTTCTTCTTCTTCTTCTTTTTGTTATTGTTGTCCCTCTCTCTCACAGAGAAAAAGAGAAAAAGAGAAAATAATAGGAGTCGGCTGCTCTTTTTGACCCCCCCCCCCCCCTATCCCACTTTTTGTTTAGATGCCTCGAGTATTGCCTAATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGARGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGTTTCGAGACATTAGGGATTTTCGATAGTTTTAGGTTTTTTTGGGATTTTTATGATTTCAGGATTTTCGGTTTTTTTTGGGATCGTTAGAAATTTTAGGGCTTCAGAATTTTCAAAATTTCTGCGATTTTCAGAATTTAAGGGTTTTTGGGGTTTTTTCGAATTCTACTGTTTTTGAGACTTCATGGATTTTCAGGATTTTTTTTAGATTTTTGGAATTTCAAAGTTTCCAGGATACCCAGATTTTTGGGTTTTAAAGTTTCTGGGATTTTTGAAGTTTTTGGGCCTTTTGTGATTTCGGCATTTCTAGAATTTTTGGTATTTTTGGGATTATTAGATTTATAGGATAATTGAGAATGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTATTGCCTAATCAAACAGAG</pcr_primer_p1>
		<pcr_primer_p2>ACTACGGAAAATCATGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAGTATTGCCTAATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGT</canonical_amplicon>
		<polymorphic_amplicon>GAGTATTGCCTAATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGARGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38898</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>245046</contig_pos>
        <strand>+</strand>
        <context>GGACTTTAAA[A/G]CTTCAAAACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAA</left_flank>
        <right_flank>CTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGATAATTTGAAAGTTTCATATGCATTTTTAGAAGCTTCTGGACCGTTTGAAAGCTCCTTGGCCACTAAATTCTTGTAAAAAAACAACAAATTTAGCAAGAAATAATGATGTTTTCGAAGGGAAGCATTCTTAGCTTCTCATTGTTTCCAACAAGAGACTCTTTCTCCCCAGTAGTAGGCCTTGTTCTTTCCGGATACAAGCGGATATCATGAATTTATTGTTCTCTTCTTCTTCTTCTTCTTTTTGTTATTGTTGTCCCTCTCTCTCACAGAGAAAAAGAGAAAAAGAGAAAATAATAGGAGTCGGCTGCTCTTTTTGACCCCCCCCCCCCCCTATCCCACTTTTTGTTTAGATGCCTCGAGTATTGCCTAATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGTTTCGAGACATTAGGGATTTTCGATAGTTTTAGGTTTTTTTGGGATTTTTATGATTTCAGGATTTTCGGTTTTTTTTGGGATCGTTAGAAATTTTAGGGCTTCAGAATTTTCAAAATTTCTGCGATTTTCAGAATTTAAGGGTTTTTGGGGTTTTTTCGAATTCTACTGTTTTTGAGACTTCATGGATTTTCAGGATTTTTTTTAGATTTTTGGAATTTCAAAGTTTCCAGGATACCCAGATTTTTGGGTTTTAAAGTTTCTGGGATTTTTGAAGTTTTTGGGCCTTTTGTGATTTCGGCATTTCTAGAATTTTTGGTATTTTTGGGATTATTAGATTTATAGGATAATTGAGAATGTTGGGATTTTTTCCAAGGTTTTCAAACTTTTTGGAAT</canonical>
            <polymorphic>CGAGATAATTTGAAAGTTTCATATGCATTTTTAGAAGCTTCTGGACCGTTTGAAAGCTCCTTGGCCACTAAATTCTTGTAAAAAAACAACAAATTTAGCAAGAAATAATGATGTTTTCGAAGGGAAGCATTCTTAGCTTCTCATTGTTTCCAACAAGAGACTCTTTCTCCCCAGTAGTAGGCCTTGTTCTTTCCGGATACAAGCGGATATCATGAATTTATTGTTCTCTTCTTCTTCTTCTTCTTTTTGTTATTGTTGTCCCTCTCTCTCACAGAGAAAAAGAGAAAAAGAGAAAATAATAGGAGTCGGCTGCTCTTTTTGACCCCCCCCCCCCCCTATCCCACTTTTTGTTTAGATGCCTCGAGTATTGCCTAATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAARCTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGTTTCGAGACATTAGGGATTTTCGATAGTTTTAGGTTTTTTTGGGATTTTTATGATTTCAGGATTTTCGGTTTTTTTTGGGATCGTTAGAAATTTTAGGGCTTCAGAATTTTCAAAATTTCTGCGATTTTCAGAATTTAAGGGTTTTTGGGGTTTTTTCGAATTCTACTGTTTTTGAGACTTCATGGATTTTCAGGATTTTTTTTAGATTTTTGGAATTTCAAAGTTTCCAGGATACCCAGATTTTTGGGTTTTAAAGTTTCTGGGATTTTTGAAGTTTTTGGGCCTTTTGTGATTTCGGCATTTCTAGAATTTTTGGTATTTTTGGGATTATTAGATTTATAGGATAATTGAGAATGTTGGGATTTTTTCCAAGGTTTTCAAACTTTTTGGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTATTGCCTAATCAAACAGAG</pcr_primer_p1>
		<pcr_primer_p2>ACTACGGAAAATCATGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAGTATTGCCTAATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGT</canonical_amplicon>
		<polymorphic_amplicon>GAGTATTGCCTAATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAARCTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38899</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>245058</contig_pos>
        <strand>+</strand>
        <context>TTCAAAACCT[C/T]TWTAAAATCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCT</left_flank>
        <right_flank>TTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTTTCATATGCATTTTTAGAAGCTTCTGGACCGTTTGAAAGCTCCTTGGCCACTAAATTCTTGTAAAAAAACAACAAATTTAGCAAGAAATAATGATGTTTTCGAAGGGAAGCATTCTTAGCTTCTCATTGTTTCCAACAAGAGACTCTTTCTCCCCAGTAGTAGGCCTTGTTCTTTCCGGATACAAGCGGATATCATGAATTTATTGTTCTCTTCTTCTTCTTCTTCTTTTTGTTATTGTTGTCCCTCTCTCTCACAGAGAAAAAGAGAAAAAGAGAAAATAATAGGAGTCGGCTGCTCTTTTTGACCCCCCCCCCCCCCTATCCCACTTTTTGTTTAGATGCCTCGAGTATTGCCTAATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGTTTCGAGACATTAGGGATTTTCGATAGTTTTAGGTTTTTTTGGGATTTTTATGATTTCAGGATTTTCGGTTTTTTTTGGGATCGTTAGAAATTTTAGGGCTTCAGAATTTTCAAAATTTCTGCGATTTTCAGAATTTAAGGGTTTTTGGGGTTTTTTCGAATTCTACTGTTTTTGAGACTTCATGGATTTTCAGGATTTTTTTTAGATTTTTGGAATTTCAAAGTTTCCAGGATACCCAGATTTTTGGGTTTTAAAGTTTCTGGGATTTTTGAAGTTTTTGGGCCTTTTGTGATTTCGGCATTTCTAGAATTTTTGGTATTTTTGGGATTATTAGATTTATAGGATAATTGAGAATGTTGGGATTTTTTCCAAGGTTTTCAAACTTTTTGGAATTAAAAATATTTT</canonical>
            <polymorphic>AAAGTTTCATATGCATTTTTAGAAGCTTCTGGACCGTTTGAAAGCTCCTTGGCCACTAAATTCTTGTAAAAAAACAACAAATTTAGCAAGAAATAATGATGTTTTCGAAGGGAAGCATTCTTAGCTTCTCATTGTTTCCAACAAGAGACTCTTTCTCCCCAGTAGTAGGCCTTGTTCTTTCCGGATACAAGCGGATATCATGAATTTATTGTTCTCTTCTTCTTCTTCTTCTTTTTGTTATTGTTGTCCCTCTCTCTCACAGAGAAAAAGAGAAAAAGAGAAAATAATAGGAGTCGGCTGCTCTTTTTGACCCCCCCCCCCCCCTATCCCACTTTTTGTTTAGATGCCTCGAGTATTGCCTAATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTYTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGTTTCGAGACATTAGGGATTTTCGATAGTTTTAGGTTTTTTTGGGATTTTTATGATTTCAGGATTTTCGGTTTTTTTTGGGATCGTTAGAAATTTTAGGGCTTCAGAATTTTCAAAATTTCTGCGATTTTCAGAATTTAAGGGTTTTTGGGGTTTTTTCGAATTCTACTGTTTTTGAGACTTCATGGATTTTCAGGATTTTTTTTAGATTTTTGGAATTTCAAAGTTTCCAGGATACCCAGATTTTTGGGTTTTAAAGTTTCTGGGATTTTTGAAGTTTTTGGGCCTTTTGTGATTTCGGCATTTCTAGAATTTTTGGTATTTTTGGGATTATTAGATTTATAGGATAATTGAGAATGTTGGGATTTTTTCCAAGGTTTTCAAACTTTTTGGAATTAAAAATATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTATTGCCTAATCAAACAGAG</pcr_primer_p1>
		<pcr_primer_p2>ACTACGGAAAATCATGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAGTATTGCCTAATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGT</canonical_amplicon>
		<polymorphic_amplicon>GAGTATTGCCTAATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTYTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38900</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>245060</contig_pos>
        <strand>+</strand>
        <context>CAAAACCTYT[A/T]TAAAATCTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCT</left_flank>
        <right_flank>TAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTTCATATGCATTTTTAGAAGCTTCTGGACCGTTTGAAAGCTCCTTGGCCACTAAATTCTTGTAAAAAAACAACAAATTTAGCAAGAAATAATGATGTTTTCGAAGGGAAGCATTCTTAGCTTCTCATTGTTTCCAACAAGAGACTCTTTCTCCCCAGTAGTAGGCCTTGTTCTTTCCGGATACAAGCGGATATCATGAATTTATTGTTCTCTTCTTCTTCTTCTTCTTTTTGTTATTGTTGTCCCTCTCTCTCACAGAGAAAAAGAGAAAAAGAGAAAATAATAGGAGTCGGCTGCTCTTTTTGACCCCCCCCCCCCCCTATCCCACTTTTTGTTTAGATGCCTCGAGTATTGCCTAATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGTTTCGAGACATTAGGGATTTTCGATAGTTTTAGGTTTTTTTGGGATTTTTATGATTTCAGGATTTTCGGTTTTTTTTGGGATCGTTAGAAATTTTAGGGCTTCAGAATTTTCAAAATTTCTGCGATTTTCAGAATTTAAGGGTTTTTGGGGTTTTTTCGAATTCTACTGTTTTTGAGACTTCATGGATTTTCAGGATTTTTTTTAGATTTTTGGAATTTCAAAGTTTCCAGGATACCCAGATTTTTGGGTTTTAAAGTTTCTGGGATTTTTGAAGTTTTTGGGCCTTTTGTGATTTCGGCATTTCTAGAATTTTTGGTATTTTTGGGATTATTAGATTTATAGGATAATTGAGAATGTTGGGATTTTTTCCAAGGTTTTCAAACTTTTTGGAATTAAAAATATTTTTT</canonical>
            <polymorphic>AGTTTCATATGCATTTTTAGAAGCTTCTGGACCGTTTGAAAGCTCCTTGGCCACTAAATTCTTGTAAAAAAACAACAAATTTAGCAAGAAATAATGATGTTTTCGAAGGGAAGCATTCTTAGCTTCTCATTGTTTCCAACAAGAGACTCTTTCTCCCCAGTAGTAGGCCTTGTTCTTTCCGGATACAAGCGGATATCATGAATTTATTGTTCTCTTCTTCTTCTTCTTCTTTTTGTTATTGTTGTCCCTCTCTCTCACAGAGAAAAAGAGAAAAAGAGAAAATAATAGGAGTCGGCTGCTCTTTTTGACCCCCCCCCCCCCCTATCCCACTTTTTGTTTAGATGCCTCGAGTATTGCCTAATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTWTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGTTTCGAGACATTAGGGATTTTCGATAGTTTTAGGTTTTTTTGGGATTTTTATGATTTCAGGATTTTCGGTTTTTTTTGGGATCGTTAGAAATTTTAGGGCTTCAGAATTTTCAAAATTTCTGCGATTTTCAGAATTTAAGGGTTTTTGGGGTTTTTTCGAATTCTACTGTTTTTGAGACTTCATGGATTTTCAGGATTTTTTTTAGATTTTTGGAATTTCAAAGTTTCCAGGATACCCAGATTTTTGGGTTTTAAAGTTTCTGGGATTTTTGAAGTTTTTGGGCCTTTTGTGATTTCGGCATTTCTAGAATTTTTGGTATTTTTGGGATTATTAGATTTATAGGATAATTGAGAATGTTGGGATTTTTTCCAAGGTTTTCAAACTTTTTGGAATTAAAAATATTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>482 344 155 19</canonical_bands>
                <polymorphic_bands>482 363 155</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>481 228 142 116 19 14</canonical_bands>
                <polymorphic_bands>481 247 142 116 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTATTGCCTAATCAAACAGAG</pcr_primer_p1>
		<pcr_primer_p2>ACTACGGAAAATCATGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAGTATTGCCTAATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGT</canonical_amplicon>
		<polymorphic_amplicon>GAGTATTGCCTAATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTWTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38901</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>245097</contig_pos>
        <strand></strand>
        <context>GGATTTTTAG[A/G]GTTTTCTAGR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAG</left_flank>
        <right_flank>GTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAGCTCCTTGGCCACTAAATTCTTGTAAAAAAACAACAAATTTAGCAAGAAATAATGATGTTTTCGAAGGGAAGCATTCTTAGCTTCTCATTGTTTCCAACAAGAGACTCTTTCTCCCCAGTAGTAGGCCTTGTTCTTTCCGGATACAAGCGGATATCATGAATTTATTGTTCTCTTCTTCTTCTTCTTCTTTTTGTTATTGTTGTCCCTCTCTCTCACAGAGAAAAAGAGAAAAAGAGAAAATAATAGGAGTCGGCTGCTCTTTTTGACCCCCCCCCCCCCCTATCCCACTTTTTGTTTAGATGCCTCGAGTATTGCCTAATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGTTTCGAGACATTAGGGATTTTCGATAGTTTTAGGTTTTTTTGGGATTTTTATGATTTCAGGATTTTCGGTTTTTTTTGGGATCGTTAGAAATTTTAGGGCTTCAGAATTTTCAAAATTTCTGCGATTTTCAGAATTTAAGGGTTTTTGGGGTTTTTTCGAATTCTACTGTTTTTGAGACTTCATGGATTTTCAGGATTTTTTTTAGATTTTTGGAATTTCAAAGTTTCCAGGATACCCAGATTTTTGGGTTTTAAAGTTTCTGGGATTTTTGAAGTTTTTGGGCCTTTTGTGATTTCGGCATTTCTAGAATTTTTGGTATTTTTGGGATTATTAGATTTATAGGATAATTGAGAATGTTGGGATTTTTTCCAAGGTTTTCAAACTTTTTGGAATTAAAAATATTTTTTTTAATTTTTAGGGGTTTTCAGAATTTGATCTTTCTAC</canonical>
            <polymorphic>GAAAGCTCCTTGGCCACTAAATTCTTGTAAAAAAACAACAAATTTAGCAAGAAATAATGATGTTTTCGAAGGGAAGCATTCTTAGCTTCTCATTGTTTCCAACAAGAGACTCTTTCTCCCCAGTAGTAGGCCTTGTTCTTTCCGGATACAAGCGGATATCATGAATTTATTGTTCTCTTCTTCTTCTTCTTCTTTTTGTTATTGTTGTCCCTCTCTCTCACAGAGAAAAAGAGAAAAAGAGAAAATAATAGGAGTCGGCTGCTCTTTTTGACCCCCCCCCCCCCCTATCCCACTTTTTGTTTAGATGCCTCGAGTATTGCCTAATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGRGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGTTTCGAGACATTAGGGATTTTCGATAGTTTTAGGTTTTTTTGGGATTTTTATGATTTCAGGATTTTCGGTTTTTTTTGGGATCGTTAGAAATTTTAGGGCTTCAGAATTTTCAAAATTTCTGCGATTTTCAGAATTTAAGGGTTTTTGGGGTTTTTTCGAATTCTACTGTTTTTGAGACTTCATGGATTTTCAGGATTTTTTTTAGATTTTTGGAATTTCAAAGTTTCCAGGATACCCAGATTTTTGGGTTTTAAAGTTTCTGGGATTTTTGAAGTTTTTGGGCCTTTTGTGATTTCGGCATTTCTAGAATTTTTGGTATTTTTGGGATTATTAGATTTATAGGATAATTGAGAATGTTGGGATTTTTTCCAAGGTTTTCAAACTTTTTGGAATTAAAAATATTTTTTTTAATTTTTAGGGGTTTTCAGAATTTGATCTTTCTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTATTGCCTAATCAAACAGAG</pcr_primer_p1>
		<pcr_primer_p2>ACTACGGAAAATCATGGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GAGTATTGCCTAATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGT</canonical_amplicon>
		<polymorphic_amplicon>GAGTATTGCCTAATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGRGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38902</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>245107</contig_pos>
        <strand>+</strand>
        <context>RGTTTTCTAG[A/G]ATTTTCGGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAG</left_flank>
        <right_flank>ATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGTTTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGCCACTAAATTCTTGTAAAAAAACAACAAATTTAGCAAGAAATAATGATGTTTTCGAAGGGAAGCATTCTTAGCTTCTCATTGTTTCCAACAAGAGACTCTTTCTCCCCAGTAGTAGGCCTTGTTCTTTCCGGATACAAGCGGATATCATGAATTTATTGTTCTCTTCTTCTTCTTCTTCTTTTTGTTATTGTTGTCCCTCTCTCTCACAGAGAAAAAGAGAAAAAGAGAAAATAATAGGAGTCGGCTGCTCTTTTTGACCCCCCCCCCCCCCTATCCCACTTTTTGTTTAGATGCCTCGAGTATTGCCTAATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGTTTCGAGACATTAGGGATTTTCGATAGTTTTAGGTTTTTTTGGGATTTTTATGATTTCAGGATTTTCGGTTTTTTTTGGGATCGTTAGAAATTTTAGGGCTTCAGAATTTTCAAAATTTCTGCGATTTTCAGAATTTAAGGGTTTTTGGGGTTTTTTCGAATTCTACTGTTTTTGAGACTTCATGGATTTTCAGGATTTTTTTTAGATTTTTGGAATTTCAAAGTTTCCAGGATACCCAGATTTTTGGGTTTTAAAGTTTCTGGGATTTTTGAAGTTTTTGGGCCTTTTGTGATTTCGGCATTTCTAGAATTTTTGGTATTTTTGGGATTATTAGATTTATAGGATAATTGAGAATGTTGGGATTTTTTCCAAGGTTTTCAAACTTTTTGGAATTAAAAATATTTTTTTTAATTTTTAGGGGTTTTCAGAATTTGATCTTTCTACTATTTTTAAG</canonical>
            <polymorphic>TGGCCACTAAATTCTTGTAAAAAAACAACAAATTTAGCAAGAAATAATGATGTTTTCGAAGGGAAGCATTCTTAGCTTCTCATTGTTTCCAACAAGAGACTCTTTCTCCCCAGTAGTAGGCCTTGTTCTTTCCGGATACAAGCGGATATCATGAATTTATTGTTCTCTTCTTCTTCTTCTTCTTTTTGTTATTGTTGTCCCTCTCTCTCACAGAGAAAAAGAGAAAAAGAGAAAATAATAGGAGTCGGCTGCTCTTTTTGACCCCCCCCCCCCCCTATCCCACTTTTTGTTTAGATGCCTCGAGTATTGCCTAATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGRATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGTTTCGAGACATTAGGGATTTTCGATAGTTTTAGGTTTTTTTGGGATTTTTATGATTTCAGGATTTTCGGTTTTTTTTGGGATCGTTAGAAATTTTAGGGCTTCAGAATTTTCAAAATTTCTGCGATTTTCAGAATTTAAGGGTTTTTGGGGTTTTTTCGAATTCTACTGTTTTTGAGACTTCATGGATTTTCAGGATTTTTTTTAGATTTTTGGAATTTCAAAGTTTCCAGGATACCCAGATTTTTGGGTTTTAAAGTTTCTGGGATTTTTGAAGTTTTTGGGCCTTTTGTGATTTCGGCATTTCTAGAATTTTTGGTATTTTTGGGATTATTAGATTTATAGGATAATTGAGAATGTTGGGATTTTTTCCAAGGTTTTCAAACTTTTTGGAATTAAAAATATTTTTTTTAATTTTTAGGGGTTTTCAGAATTTGATCTTTCTACTATTTTTAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>346 123 121 118 94 55 27 26 21 18 17 16 9 9</canonical_bands>
                <polymorphic_bands>363 123 121 118 94 55 27 26 21 18 16 9 9</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>346 150 134 132 113 54 53 18</canonical_bands>
                <polymorphic_bands>399 150 134 132 113 54 18</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>243 123 118 103 94 55 45 38 27 26 21 19 19 18 17 16 9 9</canonical_bands>
                <polymorphic_bands>243 123 120 118 94 55 45 38 27 26 21 19 19 18 16 9 9</polymorphic_bands>
            </assay>
            <assay>
                <site>TCTAGA</site>
                <isoschizomers>
                    <enzyme>XbaI</enzyme>
                </isoschizomers>
                <canonical_bands>495 354 151</canonical_bands>
                <polymorphic_bands>849 151</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCAAACAGAGAGAACACAAAAC</pcr_primer_p1>
		<pcr_primer_p2>AACTATCGAAAATCCCTAATGTC</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>ATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGTTTCGAGACATTAGGGATTTTCGATAGTT</canonical_amplicon>
		<polymorphic_amplicon>ATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGRATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGTTTCGAGACATTAGGGATTTTCGATAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38903</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>245121</contig_pos>
        <strand></strand>
        <context>TTCGGGTTTT[G/T]GAAATTTTKG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTT</left_flank>
        <right_flank>GAAATTTTTGGATTTCCATGATTTTCCGTAGTTTCGAGACATTAGGGATT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTAAAAAAACAACAAATTTAGCAAGAAATAATGATGTTTTCGAAGGGAAGCATTCTTAGCTTCTCATTGTTTCCAACAAGAGACTCTTTCTCCCCAGTAGTAGGCCTTGTTCTTTCCGGATACAAGCGGATATCATGAATTTATTGTTCTCTTCTTCTTCTTCTTCTTTTTGTTATTGTTGTCCCTCTCTCTCACAGAGAAAAAGAGAAAAAGAGAAAATAATAGGAGTCGGCTGCTCTTTTTGACCCCCCCCCCCCCCTATCCCACTTTTTGTTTAGATGCCTCGAGTATTGCCTAATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGTTTCGAGACATTAGGGATTTTCGATAGTTTTAGGTTTTTTTGGGATTTTTATGATTTCAGGATTTTCGGTTTTTTTTGGGATCGTTAGAAATTTTAGGGCTTCAGAATTTTCAAAATTTCTGCGATTTTCAGAATTTAAGGGTTTTTGGGGTTTTTTCGAATTCTACTGTTTTTGAGACTTCATGGATTTTCAGGATTTTTTTTAGATTTTTGGAATTTCAAAGTTTCCAGGATACCCAGATTTTTGGGTTTTAAAGTTTCTGGGATTTTTGAAGTTTTTGGGCCTTTTGTGATTTCGGCATTTCTAGAATTTTTGGTATTTTTGGGATTATTAGATTTATAGGATAATTGAGAATGTTGGGATTTTTTCCAAGGTTTTCAAACTTTTTGGAATTAAAAATATTTTTTTTAATTTTTAGGGGTTTTCAGAATTTGATCTTTCTACTATTTTTAAGATTTTCAGAGTATT</canonical>
            <polymorphic>TTGTAAAAAAACAACAAATTTAGCAAGAAATAATGATGTTTTCGAAGGGAAGCATTCTTAGCTTCTCATTGTTTCCAACAAGAGACTCTTTCTCCCCAGTAGTAGGCCTTGTTCTTTCCGGATACAAGCGGATATCATGAATTTATTGTTCTCTTCTTCTTCTTCTTCTTTTTGTTATTGTTGTCCCTCTCTCTCACAGAGAAAAAGAGAAAAAGAGAAAATAATAGGAGTCGGCTGCTCTTTTTGACCCCCCCCCCCCCCTATCCCACTTTTTGTTTAGATGCCTCGAGTATTGCCTAATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTKGAAATTTTTGGATTTCCATGATTTTCCGTAGTTTCGAGACATTAGGGATTTTCGATAGTTTTAGGTTTTTTTGGGATTTTTATGATTTCAGGATTTTCGGTTTTTTTTGGGATCGTTAGAAATTTTAGGGCTTCAGAATTTTCAAAATTTCTGCGATTTTCAGAATTTAAGGGTTTTTGGGGTTTTTTCGAATTCTACTGTTTTTGAGACTTCATGGATTTTCAGGATTTTTTTTAGATTTTTGGAATTTCAAAGTTTCCAGGATACCCAGATTTTTGGGTTTTAAAGTTTCTGGGATTTTTGAAGTTTTTGGGCCTTTTGTGATTTCGGCATTTCTAGAATTTTTGGTATTTTTGGGATTATTAGATTTATAGGATAATTGAGAATGTTGGGATTTTTTCCAAGGTTTTCAAACTTTTTGGAATTAAAAATATTTTTTTTAATTTTTAGGGGTTTTCAGAATTTGATCTTTCTACTATTTTTAAGATTTTCAGAGTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAAACAGAGAGAACACAAAAC</pcr_primer_p1>
		<pcr_primer_p2>AACTATCGAAAATCCCTAATGTC</pcr_primer_p2>
		<pcr_amplicon_size>261</pcr_amplicon_size>
		<canonical_amplicon>ATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGTTTCGAGACATTAGGGATTTTCGATAGTT</canonical_amplicon>
		<polymorphic_amplicon>ATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTKGAAATTTTTGGATTTCCATGATTTTCCGTAGTTTCGAGACATTAGGGATTTTCGATAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38904</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>245130</contig_pos>
        <strand>+</strand>
        <context>TKGAAATTTT[G/T]GGATTTCCAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTT</left_flank>
        <right_flank>GGATTTCCATGATTTTCCGTAGTTTCGAGACATTAGGGATTTTCGATAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAACAAATTTAGCAAGAAATAATGATGTTTTCGAAGGGAAGCATTCTTAGCTTCTCATTGTTTCCAACAAGAGACTCTTTCTCCCCAGTAGTAGGCCTTGTTCTTTCCGGATACAAGCGGATATCATGAATTTATTGTTCTCTTCTTCTTCTTCTTCTTTTTGTTATTGTTGTCCCTCTCTCTCACAGAGAAAAAGAGAAAAAGAGAAAATAATAGGAGTCGGCTGCTCTTTTTGACCCCCCCCCCCCCCTATCCCACTTTTTGTTTAGATGCCTCGAGTATTGCCTAATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGTTTCGAGACATTAGGGATTTTCGATAGTTTTAGGTTTTTTTGGGATTTTTATGATTTCAGGATTTTCGGTTTTTTTTGGGATCGTTAGAAATTTTAGGGCTTCAGAATTTTCAAAATTTCTGCGATTTTCAGAATTTAAGGGTTTTTGGGGTTTTTTCGAATTCTACTGTTTTTGAGACTTCATGGATTTTCAGGATTTTTTTTAGATTTTTGGAATTTCAAAGTTTCCAGGATACCCAGATTTTTGGGTTTTAAAGTTTCTGGGATTTTTGAAGTTTTTGGGCCTTTTGTGATTTCGGCATTTCTAGAATTTTTGGTATTTTTGGGATTATTAGATTTATAGGATAATTGAGAATGTTGGGATTTTTTCCAAGGTTTTCAAACTTTTTGGAATTAAAAATATTTTTTTTAATTTTTAGGGGTTTTCAGAATTTGATCTTTCTACTATTTTTAAGATTTTCAGAGTATTTTGGATTTT</canonical>
            <polymorphic>AACAACAAATTTAGCAAGAAATAATGATGTTTTCGAAGGGAAGCATTCTTAGCTTCTCATTGTTTCCAACAAGAGACTCTTTCTCCCCAGTAGTAGGCCTTGTTCTTTCCGGATACAAGCGGATATCATGAATTTATTGTTCTCTTCTTCTTCTTCTTCTTTTTGTTATTGTTGTCCCTCTCTCTCACAGAGAAAAAGAGAAAAAGAGAAAATAATAGGAGTCGGCTGCTCTTTTTGACCCCCCCCCCCCCCTATCCCACTTTTTGTTTAGATGCCTCGAGTATTGCCTAATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTKGGATTTCCATGATTTTCCGTAGTTTCGAGACATTAGGGATTTTCGATAGTTTTAGGTTTTTTTGGGATTTTTATGATTTCAGGATTTTCGGTTTTTTTTGGGATCGTTAGAAATTTTAGGGCTTCAGAATTTTCAAAATTTCTGCGATTTTCAGAATTTAAGGGTTTTTGGGGTTTTTTCGAATTCTACTGTTTTTGAGACTTCATGGATTTTCAGGATTTTTTTTAGATTTTTGGAATTTCAAAGTTTCCAGGATACCCAGATTTTTGGGTTTTAAAGTTTCTGGGATTTTTGAAGTTTTTGGGCCTTTTGTGATTTCGGCATTTCTAGAATTTTTGGTATTTTTGGGATTATTAGATTTATAGGATAATTGAGAATGTTGGGATTTTTTCCAAGGTTTTCAAACTTTTTGGAATTAAAAATATTTTTTTTAATTTTTAGGGGTTTTCAGAATTTGATCTTTCTACTATTTTTAAGATTTTCAGAGTATTTTGGATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAAACAGAGAGAACACAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CTAAAACTATCGAAAATCCCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>265</pcr_amplicon_size>
		<canonical_amplicon>ATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGTTTCGAGACATTAGGGATTTTCGATAGTTTTAG</canonical_amplicon>
		<polymorphic_amplicon>ATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTKGGATTTCCATGATTTTCCGTAGTTTCGAGACATTAGGGATTTTCGATAGTTTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38905</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>245158</contig_pos>
        <strand></strand>
        <context>CGTAGTTTCG[A/G]GACATTAGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGTTTCG</left_flank>
        <right_flank>GACATTAGGGATTTTCGATAGTTTTAGGTTTTTTTGGGATTTTTATGATT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTCGAAGGGAAGCATTCTTAGCTTCTCATTGTTTCCAACAAGAGACTCTTTCTCCCCAGTAGTAGGCCTTGTTCTTTCCGGATACAAGCGGATATCATGAATTTATTGTTCTCTTCTTCTTCTTCTTCTTTTTGTTATTGTTGTCCCTCTCTCTCACAGAGAAAAAGAGAAAAAGAGAAAATAATAGGAGTCGGCTGCTCTTTTTGACCCCCCCCCCCCCCTATCCCACTTTTTGTTTAGATGCCTCGAGTATTGCCTAATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGTTTCGAGACATTAGGGATTTTCGATAGTTTTAGGTTTTTTTGGGATTTTTATGATTTCAGGATTTTCGGTTTTTTTTGGGATCGTTAGAAATTTTAGGGCTTCAGAATTTTCAAAATTTCTGCGATTTTCAGAATTTAAGGGTTTTTGGGGTTTTTTCGAATTCTACTGTTTTTGAGACTTCATGGATTTTCAGGATTTTTTTTAGATTTTTGGAATTTCAAAGTTTCCAGGATACCCAGATTTTTGGGTTTTAAAGTTTCTGGGATTTTTGAAGTTTTTGGGCCTTTTGTGATTTCGGCATTTCTAGAATTTTTGGTATTTTTGGGATTATTAGATTTATAGGATAATTGAGAATGTTGGGATTTTTTCCAAGGTTTTCAAACTTTTTGGAATTAAAAATATTTTTTTTAATTTTTAGGGGTTTTCAGAATTTGATCTTTCTACTATTTTTAAGATTTTCAGAGTATTTTGGATTTTTGTGATTTTCCGAATTTTTTGGATTTTT</canonical>
            <polymorphic>GTTTTCGAAGGGAAGCATTCTTAGCTTCTCATTGTTTCCAACAAGAGACTCTTTCTCCCCAGTAGTAGGCCTTGTTCTTTCCGGATACAAGCGGATATCATGAATTTATTGTTCTCTTCTTCTTCTTCTTCTTTTTGTTATTGTTGTCCCTCTCTCTCACAGAGAAAAAGAGAAAAAGAGAAAATAATAGGAGTCGGCTGCTCTTTTTGACCCCCCCCCCCCCCTATCCCACTTTTTGTTTAGATGCCTCGAGTATTGCCTAATCAAACAGAGAGAACACAAAACGAATCGGTTTTCCATGAAAAGGGGAGAAGACCCCCTTTGGGGAAGACGTCTGGGAACGGTAATTAGAAGGATTTTTGTTTTGCGAAGGGTTCGGACTTTAAAACTTCAAAACCTCTTTAAAATCTTTGTAAAAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGTTTCGRGACATTAGGGATTTTCGATAGTTTTAGGTTTTTTTGGGATTTTTATGATTTCAGGATTTTCGGTTTTTTTTGGGATCGTTAGAAATTTTAGGGCTTCAGAATTTTCAAAATTTCTGCGATTTTCAGAATTTAAGGGTTTTTGGGGTTTTTTCGAATTCTACTGTTTTTGAGACTTCATGGATTTTCAGGATTTTTTTTAGATTTTTGGAATTTCAAAGTTTCCAGGATACCCAGATTTTTGGGTTTTAAAGTTTCTGGGATTTTTGAAGTTTTTGGGCCTTTTGTGATTTCGGCATTTCTAGAATTTTTGGTATTTTTGGGATTATTAGATTTATAGGATAATTGAGAATGTTGGGATTTTTTCCAAGGTTTTCAAACTTTTTGGAATTAAAAATATTTTTTTTAATTTTTAGGGGTTTTCAGAATTTGATCTTTCTACTATTTTTAAGATTTTCAGAGTATTTTGGATTTTTGTGATTTTCCGAATTTTTTGGATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>348 248 244 136 18 6</canonical_bands>
                <polymorphic_bands>348 266 244 136 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACCATTTTTGGGATTTTTA</pcr_primer_p1>
		<pcr_primer_p2>TGAAAATTCTGAAGCCCTAA</pcr_primer_p2>
		<pcr_amplicon_size>191</pcr_amplicon_size>
		<canonical_amplicon>AAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGTTTCGAGACATTAGGGATTTTCGATAGTTTTAGGTTTTTTTGGGATTTTTATGATTTCAGGATTTTCGGTTTTTTTTGGGATCGTTAGAAATTTTAGGGCTTCAGAATTTTCA</canonical_amplicon>
		<polymorphic_amplicon>AAACCATTTTTGGGATTTTTAGAGTTTTCTAGAATTTTCGGGTTTTGGAAATTTTTGGATTTCCATGATTTTCCGTAGTTTCGRGACATTAGGGATTTTCGATAGTTTTAGGTTTTTTTGGGATTTTTATGATTTCAGGATTTTCGGTTTTTTTTGGGATCGTTAGAAATTTTAGGGCTTCAGAATTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38906</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>261296</contig_pos>
        <strand>+</strand>
        <context>TCCGCCAATT[G/T]TCATCTCTYT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATAATCTCAAAATCGAATTTCGCTGTCCAAAACTCGCATCTCCGCCAATT</left_flank>
        <right_flank>TCATCTCTTTAGGGTCATTTTTTTTGAATTTTCAGACTCCGCCCACTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATTTTTTTTTCGATTTTGATCGATCTGATTTTTTTGAGATCATATCTGTTCATTTTTTCTCTCAAAATTTTCACTTTTTCCTCTACAAAAGGGGGCGTTTGAGAGGGGTCAGAAACTGGTATTATGGCGCTGAACCTAATGATGGATGAGGTGACAAAAATGGAGACGAAGGAGAAGAAGGATTCAGAGAACACAATTGTTGCAAAATGATCAGAATCTCAAAATTTCAGAATCCAAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTCATAATCTAAGAATCTAAGAATCTAAGAATCCAGGAAATCAAGAATCCGATTTTCAGATTTTTGGCGTTTCATCCTGATTACTGTACCGAAAGTGTGATTCCACGGATTCTCTGGAATTTCGAAAACCGTGCCGCACAATTGCAAAAAGAGAGCGGAGCTGAAAATAATCTCAAAATCGAATTTCGCTGTCCAAAACTCGCATCTCCGCCAATTTTCATCTCTTTAGGGTCATTTTTTTTGAATTTTCAGACTCCGCCCACTTTTTGCAATTGTGCAGCATAGTTTTCGGGGGATCCAGAGAATCGTGTACCACAGTCTAGATACAATAACGCGAGTGAAACGCCAAGAATCCAAGAATCTAGGAATTCAAAAATTCGAATCTCAAATTCTTGGAGTTTCACCCGGATTACTGTATCCCGACTGTGGTTCAGAGGATACTCTGAATTTTCGAAAACTCTGCCGCACAATTGCAAAAAATGGGTGAAGTCTAGAAATTCAAAACGATCCTAGGGAGATAAAAATAGGTGGAGATGCTTGTTTTGAACTGAAAACCGCCCAGAGTTCTTAATTATCTTAAGCTCCGCCCCTTTTGAAAAATGTGCGGGGCCAAAATTCCAGGTATGTAAGAATCCACGAATCTAACAATCCAGGAATTTAGGAATCCAAAAATCCAGGAATCTAAGAAACCAGGAATCTAAAATTTCAAAAATCTAA</canonical>
            <polymorphic>TCATTTTTTTTTCGATTTTGATCGATCTGATTTTTTTGAGATCATATCTGTTCATTTTTTCTCTCAAAATTTTCACTTTTTCCTCTACAAAAGGGGGCGTTTGAGAGGGGTCAGAAACTGGTATTATGGCGCTGAACCTAATGATGGATGAGGTGACAAAAATGGAGACGAAGGAGAAGAAGGATTCAGAGAACACAATTGTTGCAAAATGATCAGAATCTCAAAATTTCAGAATCCAAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTCATAATCTAAGAATCTAAGAATCTAAGAATCCAGGAAATCAAGAATCCGATTTTCAGATTTTTGGCGTTTCATCCTGATTACTGTACCGAAAGTGTGATTCCACGGATTCTCTGGAATTTCGAAAACCGTGCCGCACAATTGCAAAAAGAGAGCGGAGCTGAAAATAATCTCAAAATCGAATTTCGCTGTCCAAAACTCGCATCTCCGCCAATTKTCATCTCTTTAGGGTCATTTTTTTTGAATTTTCAGACTCCGCCCACTTTTTGCAATTGTGCAGCATAGTTTTCGGGGGATCCAGAGAATCGTGTACCACAGTCTAGATACAATAACGCGAGTGAAACGCCAAGAATCCAAGAATCTAGGAATTCAAAAATTCGAATCTCAAATTCTTGGAGTTTCACCCGGATTACTGTATCCCGACTGTGGTTCAGAGGATACTCTGAATTTTCGAAAACTCTGCCGCACAATTGCAAAAAATGGGTGAAGTCTAGAAATTCAAAACGATCCTAGGGAGATAAAAATAGGTGGAGATGCTTGTTTTGAACTGAAAACCGCCCAGAGTTCTTAATTATCTTAAGCTCCGCCCCTTTTGAAAAATGTGCGGGGCCAAAATTCCAGGTATGTAAGAATCCACGAATCTAACAATCCAGGAATTTAGGAATCCAAAAATCCAGGAATCTAAGAAACCAGGAATCTAAAATTTCAAAAATCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTACTGTACCGAAAGTGTGAT</pcr_primer_p1>
		<pcr_primer_p2>TAGACTGTGGTACACGATTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GATTACTGTACCGAAAGTGTGATTCCACGGATTCTCTGGAATTTCGAAAACCGTGCCGCACAATTGCAAAAAGAGAGCGGAGCTGAAAATAATCTCAAAATCGAATTTCGCTGTCCAAAACTCGCATCTCCGCCAATTTTCATCTCTTTAGGGTCATTTTTTTTGAATTTTCAGACTCCGCCCACTTTTTGCAATTGTGCAGCATAGTTTTCGGGGGATCCAGAGAATCGTGTACCACAGTCTA</canonical_amplicon>
		<polymorphic_amplicon>GATTACTGTACCGAAAGTGTGATTCCACGGATTCTCTGGAATTTCGAAAACCGTGCCGCACAATTGCAAAAAGAGAGCGGAGCTGAAAATAATCTCAAAATCGAATTTCGCTGTCCAAAACTCGCATCTCCGCCAATTKTCATCTCTTTAGGGTCATTTTTTTTGAATTTTCAGACTCCGCCCACTTTTTGCAATTGTGCAGCATAGTTTTCGGGGGATCCAGAGAATCGTGTACCACAGTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38907</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>261305</contig_pos>
        <strand>+</strand>
        <context>TKTCATCTCT[C/T]TAGGGTCAWT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATCGAATTTCGCTGTCCAAAACTCGCATCTCCGCCAATTTTCATCTCT</left_flank>
        <right_flank>TAGGGTCATTTTTTTTGAATTTTCAGACTCCGCCCACTTTTTGCAATTGT</right_flank>
        <qual_score>130</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGATTTTGATCGATCTGATTTTTTTGAGATCATATCTGTTCATTTTTTCTCTCAAAATTTTCACTTTTTCCTCTACAAAAGGGGGCGTTTGAGAGGGGTCAGAAACTGGTATTATGGCGCTGAACCTAATGATGGATGAGGTGACAAAAATGGAGACGAAGGAGAAGAAGGATTCAGAGAACACAATTGTTGCAAAATGATCAGAATCTCAAAATTTCAGAATCCAAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTCATAATCTAAGAATCTAAGAATCTAAGAATCCAGGAAATCAAGAATCCGATTTTCAGATTTTTGGCGTTTCATCCTGATTACTGTACCGAAAGTGTGATTCCACGGATTCTCTGGAATTTCGAAAACCGTGCCGCACAATTGCAAAAAGAGAGCGGAGCTGAAAATAATCTCAAAATCGAATTTCGCTGTCCAAAACTCGCATCTCCGCCAATTTTCATCTCTTTAGGGTCATTTTTTTTGAATTTTCAGACTCCGCCCACTTTTTGCAATTGTGCAGCATAGTTTTCGGGGGATCCAGAGAATCGTGTACCACAGTCTAGATACAATAACGCGAGTGAAACGCCAAGAATCCAAGAATCTAGGAATTCAAAAATTCGAATCTCAAATTCTTGGAGTTTCACCCGGATTACTGTATCCCGACTGTGGTTCAGAGGATACTCTGAATTTTCGAAAACTCTGCCGCACAATTGCAAAAAATGGGTGAAGTCTAGAAATTCAAAACGATCCTAGGGAGATAAAAATAGGTGGAGATGCTTGTTTTGAACTGAAAACCGCCCAGAGTTCTTAATTATCTTAAGCTCCGCCCCTTTTGAAAAATGTGCGGGGCCAAAATTCCAGGTATGTAAGAATCCACGAATCTAACAATCCAGGAATTTAGGAATCCAAAAATCCAGGAATCTAAGAAACCAGGAATCTAAAATTTCAAAAATCTAAGAATCTAGG</canonical>
            <polymorphic>TTTCGATTTTGATCGATCTGATTTTTTTGAGATCATATCTGTTCATTTTTTCTCTCAAAATTTTCACTTTTTCCTCTACAAAAGGGGGCGTTTGAGAGGGGTCAGAAACTGGTATTATGGCGCTGAACCTAATGATGGATGAGGTGACAAAAATGGAGACGAAGGAGAAGAAGGATTCAGAGAACACAATTGTTGCAAAATGATCAGAATCTCAAAATTTCAGAATCCAAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTCATAATCTAAGAATCTAAGAATCTAAGAATCCAGGAAATCAAGAATCCGATTTTCAGATTTTTGGCGTTTCATCCTGATTACTGTACCGAAAGTGTGATTCCACGGATTCTCTGGAATTTCGAAAACCGTGCCGCACAATTGCAAAAAGAGAGCGGAGCTGAAAATAATCTCAAAATCGAATTTCGCTGTCCAAAACTCGCATCTCCGCCAATTTTCATCTCTYTAGGGTCATTTTTTTTGAATTTTCAGACTCCGCCCACTTTTTGCAATTGTGCAGCATAGTTTTCGGGGGATCCAGAGAATCGTGTACCACAGTCTAGATACAATAACGCGAGTGAAACGCCAAGAATCCAAGAATCTAGGAATTCAAAAATTCGAATCTCAAATTCTTGGAGTTTCACCCGGATTACTGTATCCCGACTGTGGTTCAGAGGATACTCTGAATTTTCGAAAACTCTGCCGCACAATTGCAAAAAATGGGTGAAGTCTAGAAATTCAAAACGATCCTAGGGAGATAAAAATAGGTGGAGATGCTTGTTTTGAACTGAAAACCGCCCAGAGTTCTTAATTATCTTAAGCTCCGCCCCTTTTGAAAAATGTGCGGGGCCAAAATTCCAGGTATGTAAGAATCCACGAATCTAACAATCCAGGAATTTAGGAATCCAAAAATCCAGGAATCTAAGAAACCAGGAATCTAAAATTTCAAAAATCTAAGAATCTAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTACTGTACCGAAAGTGTGAT</pcr_primer_p1>
		<pcr_primer_p2>TAGACTGTGGTACACGATTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GATTACTGTACCGAAAGTGTGATTCCACGGATTCTCTGGAATTTCGAAAACCGTGCCGCACAATTGCAAAAAGAGAGCGGAGCTGAAAATAATCTCAAAATCGAATTTCGCTGTCCAAAACTCGCATCTCCGCCAATTTTCATCTCTTTAGGGTCATTTTTTTTGAATTTTCAGACTCCGCCCACTTTTTGCAATTGTGCAGCATAGTTTTCGGGGGATCCAGAGAATCGTGTACCACAGTCTA</canonical_amplicon>
		<polymorphic_amplicon>GATTACTGTACCGAAAGTGTGATTCCACGGATTCTCTGGAATTTCGAAAACCGTGCCGCACAATTGCAAAAAGAGAGCGGAGCTGAAAATAATCTCAAAATCGAATTTCGCTGTCCAAAACTCGCATCTCCGCCAATTTTCATCTCTYTAGGGTCATTTTTTTTGAATTTTCAGACTCCGCCCACTTTTTGCAATTGTGCAGCATAGTTTTCGGGGGATCCAGAGAATCGTGTACCACAGTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38908</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>261314</contig_pos>
        <strand>+</strand>
        <context>TYTAGGGTCA[A/T]TYTTTTTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCGCTGTCCAAAACTCGCATCTCCGCCAATTTTCATCTCTTTAGGGTCA</left_flank>
        <right_flank>TTTTTTTGAATTTTCAGACTCCGCCCACTTTTTGCAATTGTGCAGCATAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATCGATCTGATTTTTTTGAGATCATATCTGTTCATTTTTTCTCTCAAAATTTTCACTTTTTCCTCTACAAAAGGGGGCGTTTGAGAGGGGTCAGAAACTGGTATTATGGCGCTGAACCTAATGATGGATGAGGTGACAAAAATGGAGACGAAGGAGAAGAAGGATTCAGAGAACACAATTGTTGCAAAATGATCAGAATCTCAAAATTTCAGAATCCAAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTCATAATCTAAGAATCTAAGAATCTAAGAATCCAGGAAATCAAGAATCCGATTTTCAGATTTTTGGCGTTTCATCCTGATTACTGTACCGAAAGTGTGATTCCACGGATTCTCTGGAATTTCGAAAACCGTGCCGCACAATTGCAAAAAGAGAGCGGAGCTGAAAATAATCTCAAAATCGAATTTCGCTGTCCAAAACTCGCATCTCCGCCAATTTTCATCTCTTTAGGGTCATTTTTTTTGAATTTTCAGACTCCGCCCACTTTTTGCAATTGTGCAGCATAGTTTTCGGGGGATCCAGAGAATCGTGTACCACAGTCTAGATACAATAACGCGAGTGAAACGCCAAGAATCCAAGAATCTAGGAATTCAAAAATTCGAATCTCAAATTCTTGGAGTTTCACCCGGATTACTGTATCCCGACTGTGGTTCAGAGGATACTCTGAATTTTCGAAAACTCTGCCGCACAATTGCAAAAAATGGGTGAAGTCTAGAAATTCAAAACGATCCTAGGGAGATAAAAATAGGTGGAGATGCTTGTTTTGAACTGAAAACCGCCCAGAGTTCTTAATTATCTTAAGCTCCGCCCCTTTTGAAAAATGTGCGGGGCCAAAATTCCAGGTATGTAAGAATCCACGAATCTAACAATCCAGGAATTTAGGAATCCAAAAATCCAGGAATCTAAGAAACCAGGAATCTAAAATTTCAAAAATCTAAGAATCTAGGAATCTAGGA</canonical>
            <polymorphic>TGATCGATCTGATTTTTTTGAGATCATATCTGTTCATTTTTTCTCTCAAAATTTTCACTTTTTCCTCTACAAAAGGGGGCGTTTGAGAGGGGTCAGAAACTGGTATTATGGCGCTGAACCTAATGATGGATGAGGTGACAAAAATGGAGACGAAGGAGAAGAAGGATTCAGAGAACACAATTGTTGCAAAATGATCAGAATCTCAAAATTTCAGAATCCAAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTCATAATCTAAGAATCTAAGAATCTAAGAATCCAGGAAATCAAGAATCCGATTTTCAGATTTTTGGCGTTTCATCCTGATTACTGTACCGAAAGTGTGATTCCACGGATTCTCTGGAATTTCGAAAACCGTGCCGCACAATTGCAAAAAGAGAGCGGAGCTGAAAATAATCTCAAAATCGAATTTCGCTGTCCAAAACTCGCATCTCCGCCAATTTTCATCTCTTTAGGGTCAWTTTTTTTGAATTTTCAGACTCCGCCCACTTTTTGCAATTGTGCAGCATAGTTTTCGGGGGATCCAGAGAATCGTGTACCACAGTCTAGATACAATAACGCGAGTGAAACGCCAAGAATCCAAGAATCTAGGAATTCAAAAATTCGAATCTCAAATTCTTGGAGTTTCACCCGGATTACTGTATCCCGACTGTGGTTCAGAGGATACTCTGAATTTTCGAAAACTCTGCCGCACAATTGCAAAAAATGGGTGAAGTCTAGAAATTCAAAACGATCCTAGGGAGATAAAAATAGGTGGAGATGCTTGTTTTGAACTGAAAACCGCCCAGAGTTCTTAATTATCTTAAGCTCCGCCCCTTTTGAAAAATGTGCGGGGCCAAAATTCCAGGTATGTAAGAATCCACGAATCTAACAATCCAGGAATTTAGGAATCCAAAAATCCAGGAATCTAAGAAACCAGGAATCTAAAATTTCAAAAATCTAAGAATCTAGGAATCTAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTACTGTACCGAAAGTGTGAT</pcr_primer_p1>
		<pcr_primer_p2>TAGACTGTGGTACACGATTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GATTACTGTACCGAAAGTGTGATTCCACGGATTCTCTGGAATTTCGAAAACCGTGCCGCACAATTGCAAAAAGAGAGCGGAGCTGAAAATAATCTCAAAATCGAATTTCGCTGTCCAAAACTCGCATCTCCGCCAATTTTCATCTCTTTAGGGTCATTTTTTTTGAATTTTCAGACTCCGCCCACTTTTTGCAATTGTGCAGCATAGTTTTCGGGGGATCCAGAGAATCGTGTACCACAGTCTA</canonical_amplicon>
		<polymorphic_amplicon>GATTACTGTACCGAAAGTGTGATTCCACGGATTCTCTGGAATTTCGAAAACCGTGCCGCACAATTGCAAAAAGAGAGCGGAGCTGAAAATAATCTCAAAATCGAATTTCGCTGTCCAAAACTCGCATCTCCGCCAATTTTCATCTCTTTAGGGTCAWTTTTTTTGAATTTTCAGACTCCGCCCACTTTTTGCAATTGTGCAGCATAGTTTTCGGGGGATCCAGAGAATCGTGTACCACAGTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38909</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>261316</contig_pos>
        <strand>+</strand>
        <context>TAGGGTCAWT[C/T]TTTTTGAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGCTGTCCAAAACTCGCATCTCCGCCAATTTTCATCTCTTTAGGGTCATT</left_flank>
        <right_flank>TTTTTGAATTTTCAGACTCCGCCCACTTTTTGCAATTGTGCAGCATAGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGATCTGATTTTTTTGAGATCATATCTGTTCATTTTTTCTCTCAAAATTTTCACTTTTTCCTCTACAAAAGGGGGCGTTTGAGAGGGGTCAGAAACTGGTATTATGGCGCTGAACCTAATGATGGATGAGGTGACAAAAATGGAGACGAAGGAGAAGAAGGATTCAGAGAACACAATTGTTGCAAAATGATCAGAATCTCAAAATTTCAGAATCCAAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTCATAATCTAAGAATCTAAGAATCTAAGAATCCAGGAAATCAAGAATCCGATTTTCAGATTTTTGGCGTTTCATCCTGATTACTGTACCGAAAGTGTGATTCCACGGATTCTCTGGAATTTCGAAAACCGTGCCGCACAATTGCAAAAAGAGAGCGGAGCTGAAAATAATCTCAAAATCGAATTTCGCTGTCCAAAACTCGCATCTCCGCCAATTTTCATCTCTTTAGGGTCATTTTTTTTGAATTTTCAGACTCCGCCCACTTTTTGCAATTGTGCAGCATAGTTTTCGGGGGATCCAGAGAATCGTGTACCACAGTCTAGATACAATAACGCGAGTGAAACGCCAAGAATCCAAGAATCTAGGAATTCAAAAATTCGAATCTCAAATTCTTGGAGTTTCACCCGGATTACTGTATCCCGACTGTGGTTCAGAGGATACTCTGAATTTTCGAAAACTCTGCCGCACAATTGCAAAAAATGGGTGAAGTCTAGAAATTCAAAACGATCCTAGGGAGATAAAAATAGGTGGAGATGCTTGTTTTGAACTGAAAACCGCCCAGAGTTCTTAATTATCTTAAGCTCCGCCCCTTTTGAAAAATGTGCGGGGCCAAAATTCCAGGTATGTAAGAATCCACGAATCTAACAATCCAGGAATTTAGGAATCCAAAAATCCAGGAATCTAAGAAACCAGGAATCTAAAATTTCAAAAATCTAAGAATCTAGGAATCTAGGAAT</canonical>
            <polymorphic>ATCGATCTGATTTTTTTGAGATCATATCTGTTCATTTTTTCTCTCAAAATTTTCACTTTTTCCTCTACAAAAGGGGGCGTTTGAGAGGGGTCAGAAACTGGTATTATGGCGCTGAACCTAATGATGGATGAGGTGACAAAAATGGAGACGAAGGAGAAGAAGGATTCAGAGAACACAATTGTTGCAAAATGATCAGAATCTCAAAATTTCAGAATCCAAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTCATAATCTAAGAATCTAAGAATCTAAGAATCCAGGAAATCAAGAATCCGATTTTCAGATTTTTGGCGTTTCATCCTGATTACTGTACCGAAAGTGTGATTCCACGGATTCTCTGGAATTTCGAAAACCGTGCCGCACAATTGCAAAAAGAGAGCGGAGCTGAAAATAATCTCAAAATCGAATTTCGCTGTCCAAAACTCGCATCTCCGCCAATTTTCATCTCTTTAGGGTCATTYTTTTTGAATTTTCAGACTCCGCCCACTTTTTGCAATTGTGCAGCATAGTTTTCGGGGGATCCAGAGAATCGTGTACCACAGTCTAGATACAATAACGCGAGTGAAACGCCAAGAATCCAAGAATCTAGGAATTCAAAAATTCGAATCTCAAATTCTTGGAGTTTCACCCGGATTACTGTATCCCGACTGTGGTTCAGAGGATACTCTGAATTTTCGAAAACTCTGCCGCACAATTGCAAAAAATGGGTGAAGTCTAGAAATTCAAAACGATCCTAGGGAGATAAAAATAGGTGGAGATGCTTGTTTTGAACTGAAAACCGCCCAGAGTTCTTAATTATCTTAAGCTCCGCCCCTTTTGAAAAATGTGCGGGGCCAAAATTCCAGGTATGTAAGAATCCACGAATCTAACAATCCAGGAATTTAGGAATCCAAAAATCCAGGAATCTAAGAAACCAGGAATCTAAAATTTCAAAAATCTAAGAATCTAGGAATCTAGGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTACTGTACCGAAAGTGTGAT</pcr_primer_p1>
		<pcr_primer_p2>TAGACTGTGGTACACGATTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GATTACTGTACCGAAAGTGTGATTCCACGGATTCTCTGGAATTTCGAAAACCGTGCCGCACAATTGCAAAAAGAGAGCGGAGCTGAAAATAATCTCAAAATCGAATTTCGCTGTCCAAAACTCGCATCTCCGCCAATTTTCATCTCTTTAGGGTCATTTTTTTTGAATTTTCAGACTCCGCCCACTTTTTGCAATTGTGCAGCATAGTTTTCGGGGGATCCAGAGAATCGTGTACCACAGTCTA</canonical_amplicon>
		<polymorphic_amplicon>GATTACTGTACCGAAAGTGTGATTCCACGGATTCTCTGGAATTTCGAAAACCGTGCCGCACAATTGCAAAAAGAGAGCGGAGCTGAAAATAATCTCAAAATCGAATTTCGCTGTCCAAAACTCGCATCTCCGCCAATTTTCATCTCTTTAGGGTCATTYTTTTTGAATTTTCAGACTCCGCCCACTTTTTGCAATTGTGCAGCATAGTTTTCGGGGGATCCAGAGAATCGTGTACCACAGTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38910</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>261522</contig_pos>
        <strand>+</strand>
        <context>AGAGGATACT[C/T]TGAATTTTCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGGAGTTTCACCCGGATTACTGTATCCCGACTGTGGTTCAGAGGATACT</left_flank>
        <right_flank>TGAATTTTCGAAAACTCTGCCGCACAATTGCAAAAAATGGGTGAAGTCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCAGAATCCAAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTCATAATCTAAGAATCTAAGAATCTAAGAATCCAGGAAATCAAGAATCCGATTTTCAGATTTTTGGCGTTTCATCCTGATTACTGTACCGAAAGTGTGATTCCACGGATTCTCTGGAATTTCGAAAACCGTGCCGCACAATTGCAAAAAGAGAGCGGAGCTGAAAATAATCTCAAAATCGAATTTCGCTGTCCAAAACTCGCATCTCCGCCAATTTTCATCTCTTTAGGGTCATTTTTTTTGAATTTTCAGACTCCGCCCACTTTTTGCAATTGTGCAGCATAGTTTTCGGGGGATCCAGAGAATCGTGTACCACAGTCTAGATACAATAACGCGAGTGAAACGCCAAGAATCCAAGAATCTAGGAATTCAAAAATTCGAATCTCAAATTCTTGGAGTTTCACCCGGATTACTGTATCCCGACTGTGGTTCAGAGGATACTCTGAATTTTCGAAAACTCTGCCGCACAATTGCAAAAAATGGGTGAAGTCTAGAAATTCAAAACGATCCTAGGGAGATAAAAATAGGTGGAGATGCTTGTTTTGAACTGAAAACCGCCCAGAGTTCTTAATTATCTTAAGCTCCGCCCCTTTTGAAAAATGTGCGGGGCCAAAATTCCAGGTATGTAAGAATCCACGAATCTAACAATCCAGGAATTTAGGAATCCAAAAATCCAGGAATCTAAGAAACCAGGAATCTAAAATTTCAAAAATCTAAGAATCTAGGAATCTAGGAATTCAAGAATCTAAGATTGCCGTCGAGCTACACGGTCACAGCCAAAGTTCGCCAAAGCTCCAGAGTCCACCAGAGCACATTTGCAACAACCCAAAGACCGTGCCTACCTCATTATCATCACTCTTCGCCTTTCTATCCTTGCTCTTCCGACCAAGAACCATGGTTTTTTTTAGCCGAATAGACCCCAGAAAGTCTCAGAAATTTCCAG</canonical>
            <polymorphic>TTTCAGAATCCAAGAATTTCAGAATTTTAGAATTTTAGAATTTTAGAATTTTAGAATTTCATAATCTAAGAATCTAAGAATCTAAGAATCCAGGAAATCAAGAATCCGATTTTCAGATTTTTGGCGTTTCATCCTGATTACTGTACCGAAAGTGTGATTCCACGGATTCTCTGGAATTTCGAAAACCGTGCCGCACAATTGCAAAAAGAGAGCGGAGCTGAAAATAATCTCAAAATCGAATTTCGCTGTCCAAAACTCGCATCTCCGCCAATTTTCATCTCTTTAGGGTCATTTTTTTTGAATTTTCAGACTCCGCCCACTTTTTGCAATTGTGCAGCATAGTTTTCGGGGGATCCAGAGAATCGTGTACCACAGTCTAGATACAATAACGCGAGTGAAACGCCAAGAATCCAAGAATCTAGGAATTCAAAAATTCGAATCTCAAATTCTTGGAGTTTCACCCGGATTACTGTATCCCGACTGTGGTTCAGAGGATACTYTGAATTTTCGAAAACTCTGCCGCACAATTGCAAAAAATGGGTGAAGTCTAGAAATTCAAAACGATCCTAGGGAGATAAAAATAGGTGGAGATGCTTGTTTTGAACTGAAAACCGCCCAGAGTTCTTAATTATCTTAAGCTCCGCCCCTTTTGAAAAATGTGCGGGGCCAAAATTCCAGGTATGTAAGAATCCACGAATCTAACAATCCAGGAATTTAGGAATCCAAAAATCCAGGAATCTAAGAAACCAGGAATCTAAAATTTCAAAAATCTAAGAATCTAGGAATCTAGGAATTCAAGAATCTAAGATTGCCGTCGAGCTACACGGTCACAGCCAAAGTTCGCCAAAGCTCCAGAGTCCACCAGAGCACATTTGCAACAACCCAAAGACCGTGCCTACCTCATTATCATCACTCTTCGCCTTTCTATCCTTGCTCTTCCGACCAAGAACCATGGTTTTTTTTAGCCGAATAGACCCCAGAAAGTCTCAGAAATTTCCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>439 193 182 86 49 16 11 11 8 5</canonical_bands>
                <polymorphic_bands>450 193 182 86 49 16 11 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATCGTGTACCACAGTCTAGATA</pcr_primer_p1>
		<pcr_primer_p2>TTCAGTTCAAAACAAGCATCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATCGTGTACCACAGTCTAGATACAATAACGCGAGTGAAACGCCAAGAATCCAAGAATCTAGGAATTCAAAAATTCGAATCTCAAATTCTTGGAGTTTCACCCGGATTACTGTATCCCGACTGTGGTTCAGAGGATACTCTGAATTTTCGAAAACTCTGCCGCACAATTGCAAAAAATGGGTGAAGTCTAGAAATTCAAAACGATCCTAGGGAGATAAAAATAGGTGGAGATGCTTGTTTTGAACTGAA</canonical_amplicon>
		<polymorphic_amplicon>GAATCGTGTACCACAGTCTAGATACAATAACGCGAGTGAAACGCCAAGAATCCAAGAATCTAGGAATTCAAAAATTCGAATCTCAAATTCTTGGAGTTTCACCCGGATTACTGTATCCCGACTGTGGTTCAGAGGATACTYTGAATTTTCGAAAACTCTGCCGCACAATTGCAAAAAATGGGTGAAGTCTAGAAATTCAAAACGATCCTAGGGAGATAAAAATAGGTGGAGATGCTTGTTTTGAACTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38911</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>262315</contig_pos>
        <strand>+</strand>
        <context>GGAAGTAGCC[A/G]TTTTTCACTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAGGTCGACGAGAGTGCAAACGACGGCGACACAGTATCGGAAGTAGCC</left_flank>
        <right_flank>TTTTTCACTTTTTTTTCTCGAAAAAAAGGAAAAAAAGAAGATAGAGAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAAGAATCTAAGATTGCCGTCGAGCTACACGGTCACAGCCAAAGTTCGCCAAAGCTCCAGAGTCCACCAGAGCACATTTGCAACAACCCAAAGACCGTGCCTACCTCATTATCATCACTCTTCGCCTTTCTATCCTTGCTCTTCCGACCAAGAACCATGGTTTTTTTTAGCCGAATAGACCCCAGAAAGTCTCAGAAATTTCCAGAAAAATCCGACAGAATAAAATTTCAAATTTCAGCCAAAAAGCGTAAAAATATGAAGCAGAATAGTTTGACAAAGGAGCAAACACTATGCCCAACAAACGTCCTTTTTCCCCTATTCGACACCATGGGTGATAAGGACAACATCGAGTTATCAATAATGTGCTCTGTTTCTCTGGAGTCTCTCGCTCAATATCTCTCTCGATTTTTCTTCTTCTTCTATCAAAGTATCAAAAATGACACACAAAAAAGGTCGACGAGAGTGCAAACGACGGCGACACAGTATCGGAAGTAGCCTTTTTTCACTTTTTTTTCTCGAAAAAAAGGAAAAAAAGAAGATAGAGAACAGAGATATGAAAATAGTGTGAAACAATAAATGGGAAAAATCGGCTGAAAAATCGACTAAAAAGGCCGAAAAAAGAGGTCACGAGGACATCCGGACCGACAGGTGTACAGACAGATTCAGACCAACAGCCCAATATCGACGAAGTTCGGGTCAGAAAGCACTGAAAAATTGGCTGGAATTCGGCTGAATTATAGATCCAAAAATCTTCGAAAACGCTCCAAAACGTTTCTTTCTCTAGTAAAATTGGTCAAAACCGATAGAAAATAAATTGAAGCTAATTTCAGAGCGTAGAGTAGACTAATTCTATGTGTCATCTATTCATTCTTTGACGGATTAGAGATAGAGAGAAATTGAGAGACGCAGAATTTTTCATCTTGGAAATTCGAAACCCAAAAAACATCGTCTGGAAATGCTGAAGTCTAGAATCTAGGAATCTACGAATCTAGGAAACT</canonical>
            <polymorphic>TTCAAGAATCTAAGATTGCCGTCGAGCTACACGGTCACAGCCAAAGTTCGCCAAAGCTCCAGAGTCCACCAGAGCACATTTGCAACAACCCAAAGACCGTGCCTACCTCATTATCATCACTCTTCGCCTTTCTATCCTTGCTCTTCCGACCAAGAACCATGGTTTTTTTTAGCCGAATAGACCCCAGAAAGTCTCAGAAATTTCCAGAAAAATCCGACAGAATAAAATTTCAAATTTCAGCCAAAAAGCGTAAAAATATGAAGCAGAATAGTTTGACAAAGGAGCAAACACTATGCCCAACAAACGTCCTTTTTCCCCTATTCGACACCATGGGTGATAAGGACAACATCGAGTTATCAATAATGTGCTCTGTTTCTCTGGAGTCTCTCGCTCAATATCTCTCTCGATTTTTCTTCTTCTTCTATCAAAGTATCAAAAATGACACACAAAAAAGGTCGACGAGAGTGCAAACGACGGCGACACAGTATCGGAAGTAGCCRTTTTTCACTTTTTTTTCTCGAAAAAAAGGAAAAAAAGAAGATAGAGAACAGAGATATGAAAATAGTGTGAAACAATAAATGGGAAAAATCGGCTGAAAAATCGACTAAAAAGGCCGAAAAAAGAGGTCACGAGGACATCCGGACCGACAGGTGTACAGACAGATTCAGACCAACAGCCCAATATCGACGAAGTTCGGGTCAGAAAGCACTGAAAAATTGGCTGGAATTCGGCTGAATTATAGATCCAAAAATCTTCGAAAACGCTCCAAAACGTTTCTTTCTCTAGTAAAATTGGTCAAAACCGATAGAAAATAAATTGAAGCTAATTTCAGAGCGTAGAGTAGACTAATTCTATGTGTCATCTATTCATTCTTTGACGGATTAGAGATAGAGAGAAATTGAGAGACGCAGAATTTTTCATCTTGGAAATTCGAAACCCAAAAAACATCGTCTGGAAATGCTGAAGTCTAGAATCTAGGAATCTACGAATCTAGGAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAGTATCAAAAATGACACACA</pcr_primer_p1>
		<pcr_primer_p2>TCTGAATCTGTCTGTACACCTG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAAAGTATCAAAAATGACACACAAAAAAGGTCGACGAGAGTGCAAACGACGGCGACACAGTATCGGAAGTAGCCTTTTTTCACTTTTTTTTCTCGAAAAAAAGGAAAAAAAGAAGATAGAGAACAGAGATATGAAAATAGTGTGAAACAATAAATGGGAAAAATCGGCTGAAAAATCGACTAAAAAGGCCGAAAAAAGAGGTCACGAGGACATCCGGACCGACAGGTGTACAGACAGATTCAGA</canonical_amplicon>
		<polymorphic_amplicon>CAAAGTATCAAAAATGACACACAAAAAAGGTCGACGAGAGTGCAAACGACGGCGACACAGTATCGGAAGTAGCCRTTTTTCACTTTTTTTTCTCGAAAAAAAGGAAAAAAAGAAGATAGAGAACAGAGATATGAAAATAGTGTGAAACAATAAATGGGAAAAATCGGCTGAAAAATCGACTAAAAAGGCCGAAAAAAGAGGTCACGAGGACATCCGGACCGACAGGTGTACAGACAGATTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38912</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>262336</contig_pos>
        <strand>+</strand>
        <context>TTTTTTCTCG[A/T]AAAAAAGGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACGACGGCGACACAGTATCGGAAGTAGCCTTTTTTCACTTTTTTTTCTCG</left_flank>
        <right_flank>AAAAAAGGAAAAAAAGAAGATAGAGAACAGAGATATGAAAATAGTGTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGAGCTACACGGTCACAGCCAAAGTTCGCCAAAGCTCCAGAGTCCACCAGAGCACATTTGCAACAACCCAAAGACCGTGCCTACCTCATTATCATCACTCTTCGCCTTTCTATCCTTGCTCTTCCGACCAAGAACCATGGTTTTTTTTAGCCGAATAGACCCCAGAAAGTCTCAGAAATTTCCAGAAAAATCCGACAGAATAAAATTTCAAATTTCAGCCAAAAAGCGTAAAAATATGAAGCAGAATAGTTTGACAAAGGAGCAAACACTATGCCCAACAAACGTCCTTTTTCCCCTATTCGACACCATGGGTGATAAGGACAACATCGAGTTATCAATAATGTGCTCTGTTTCTCTGGAGTCTCTCGCTCAATATCTCTCTCGATTTTTCTTCTTCTTCTATCAAAGTATCAAAAATGACACACAAAAAAGGTCGACGAGAGTGCAAACGACGGCGACACAGTATCGGAAGTAGCCTTTTTTCACTTTTTTTTCTCGAAAAAAAGGAAAAAAAGAAGATAGAGAACAGAGATATGAAAATAGTGTGAAACAATAAATGGGAAAAATCGGCTGAAAAATCGACTAAAAAGGCCGAAAAAAGAGGTCACGAGGACATCCGGACCGACAGGTGTACAGACAGATTCAGACCAACAGCCCAATATCGACGAAGTTCGGGTCAGAAAGCACTGAAAAATTGGCTGGAATTCGGCTGAATTATAGATCCAAAAATCTTCGAAAACGCTCCAAAACGTTTCTTTCTCTAGTAAAATTGGTCAAAACCGATAGAAAATAAATTGAAGCTAATTTCAGAGCGTAGAGTAGACTAATTCTATGTGTCATCTATTCATTCTTTGACGGATTAGAGATAGAGAGAAATTGAGAGACGCAGAATTTTTCATCTTGGAAATTCGAAACCCAAAAAACATCGTCTGGAAATGCTGAAGTCTAGAATCTAGGAATCTACGAATCTAGGAAACTAGGAATCAAGGATCCAGGTGA</canonical>
            <polymorphic>TCGAGCTACACGGTCACAGCCAAAGTTCGCCAAAGCTCCAGAGTCCACCAGAGCACATTTGCAACAACCCAAAGACCGTGCCTACCTCATTATCATCACTCTTCGCCTTTCTATCCTTGCTCTTCCGACCAAGAACCATGGTTTTTTTTAGCCGAATAGACCCCAGAAAGTCTCAGAAATTTCCAGAAAAATCCGACAGAATAAAATTTCAAATTTCAGCCAAAAAGCGTAAAAATATGAAGCAGAATAGTTTGACAAAGGAGCAAACACTATGCCCAACAAACGTCCTTTTTCCCCTATTCGACACCATGGGTGATAAGGACAACATCGAGTTATCAATAATGTGCTCTGTTTCTCTGGAGTCTCTCGCTCAATATCTCTCTCGATTTTTCTTCTTCTTCTATCAAAGTATCAAAAATGACACACAAAAAAGGTCGACGAGAGTGCAAACGACGGCGACACAGTATCGGAAGTAGCCTTTTTTCACTTTTTTTTCTCGWAAAAAAGGAAAAAAAGAAGATAGAGAACAGAGATATGAAAATAGTGTGAAACAATAAATGGGAAAAATCGGCTGAAAAATCGACTAAAAAGGCCGAAAAAAGAGGTCACGAGGACATCCGGACCGACAGGTGTACAGACAGATTCAGACCAACAGCCCAATATCGACGAAGTTCGGGTCAGAAAGCACTGAAAAATTGGCTGGAATTCGGCTGAATTATAGATCCAAAAATCTTCGAAAACGCTCCAAAACGTTTCTTTCTCTAGTAAAATTGGTCAAAACCGATAGAAAATAAATTGAAGCTAATTTCAGAGCGTAGAGTAGACTAATTCTATGTGTCATCTATTCATTCTTTGACGGATTAGAGATAGAGAGAAATTGAGAGACGCAGAATTTTTCATCTTGGAAATTCGAAACCCAAAAAACATCGTCTGGAAATGCTGAAGTCTAGAATCTAGGAATCTACGAATCTAGGAAACTAGGAATCAAGGATCCAGGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>300 176 89 83 83 71 62 55 52 27 2</canonical_bands>
                <polymorphic_bands>300 176 145 89 83 71 55 52 27 2</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>313 174 145 114 111 53 38 25 16 11</canonical_bands>
                <polymorphic_bands>313 225 174 145 53 38 25 16 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAGTATCAAAAATGACACACA</pcr_primer_p1>
		<pcr_primer_p2>TCTGAATCTGTCTGTACACCTG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAAAGTATCAAAAATGACACACAAAAAAGGTCGACGAGAGTGCAAACGACGGCGACACAGTATCGGAAGTAGCCTTTTTTCACTTTTTTTTCTCGAAAAAAAGGAAAAAAAGAAGATAGAGAACAGAGATATGAAAATAGTGTGAAACAATAAATGGGAAAAATCGGCTGAAAAATCGACTAAAAAGGCCGAAAAAAGAGGTCACGAGGACATCCGGACCGACAGGTGTACAGACAGATTCAGA</canonical_amplicon>
		<polymorphic_amplicon>CAAAGTATCAAAAATGACACACAAAAAAGGTCGACGAGAGTGCAAACGACGGCGACACAGTATCGGAAGTAGCCTTTTTTCACTTTTTTTTCTCGWAAAAAAGGAAAAAAAGAAGATAGAGAACAGAGATATGAAAATAGTGTGAAACAATAAATGGGAAAAATCGGCTGAAAAATCGACTAAAAAGGCCGAAAAAAGAGGTCACGAGGACATCCGGACCGACAGGTGTACAGACAGATTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38913</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>263683</contig_pos>
        <strand>+</strand>
        <context>TCTTCCCCCC[C/G]TATTTTCCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATGTGCTTCTCATTGTTGTTTCTGAATGAGTCCATAGTCCTCTTCCCCCC</left_flank>
        <right_flank>TATTTTCCTCTTCCATGGAACAGAGATATTGATCTGACTGGTTCAATCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTAGGAACCTAGGAAAATAAGAACCCAAGAACCCAAGAAACTGAAAATCCAGAATTTCAGTAATCTGAAATCAAGGTTACCCGGAAACCAGGAATCCATGAGCTCCAGAACTCAGAATTCAGAAATCGAGAAATCCCGAAATCTGAAAAGTCAGTTATCCGAGAACCACAGAATTTGAAAATCCAGGAAAAACCAAAAACTACGAAAATCCGAAGAAGATCGTTAAAAATGGCATTAAAACCTCTACGGGAACTCGAAATCTCCAAAATTGAAAATTTCAACCAGGACTATTTTAAGCCAAAAATCCCAAAAAATCATAAATCTCCGATGAACAACCGTCTCATAAAAAATCGCTCAAAAAAAAAATCGACAACTCCATGTCCCTTTAAAGTCATTAAAAACGAGACAAGAGAATATTCGAGAAACAAAAAAGACAAAACGAAACACATGTGCTTCTCATTGTTGTTTCTGAATGAGTCCATAGTCCTCTTCCCCCCTTATTTTCCTCTTCCATGGAACAGAGATATTGATCTGACTGGTTCAATCTCATGCTTTCTTTTTTTCTTATTTTCTCTCTTCGAGAGAGAAAAACAACAACAACAATGAGTGAGTGATGATGTCATTGTTGAAAATGTGTTACAGCAGACAACATAGTCAGTGTACAGAGAATGATCAGAGTTGAGCAGGGCGACGACAGAATATGCTATGCCCTCTATTCGAAAATTGTAGAAATTCGGAAAAGCCCCAAACCGTCAACTTTGAGCTCAAATATCTCGATTTCTGTGAAAGATACCAAAAAGTGGTCAACTGACAAAATGTTTATCATAATATCAAGCACATTTTATCAGTTAACCACTTTTTGATATCTGTTACAGTAACCGAGATAAATTGGCTCGAAATTGAAACTCCTAGTAGAGTGATTACGGTAGTTTTGCGTAGTAATTGTTCTCGGTGGTATCTTTAGATCCAGAATACGAGGCTCGTCGAGATCTATCTGA</canonical>
            <polymorphic>ACCTAGGAACCTAGGAAAATAAGAACCCAAGAACCCAAGAAACTGAAAATCCAGAATTTCAGTAATCTGAAATCAAGGTTACCCGGAAACCAGGAATCCATGAGCTCCAGAACTCAGAATTCAGAAATCGAGAAATCCCGAAATCTGAAAAGTCAGTTATCCGAGAACCACAGAATTTGAAAATCCAGGAAAAACCAAAAACTACGAAAATCCGAAGAAGATCGTTAAAAATGGCATTAAAACCTCTACGGGAACTCGAAATCTCCAAAATTGAAAATTTCAACCAGGACTATTTTAAGCCAAAAATCCCAAAAAATCATAAATCTCCGATGAACAACCGTCTCATAAAAAATCGCTCAAAAAAAAAATCGACAACTCCATGTCCCTTTAAAGTCATTAAAAACGAGACAAGAGAATATTCGAGAAACAAAAAAGACAAAACGAAACACATGTGCTTCTCATTGTTGTTTCTGAATGAGTCCATAGTCCTCTTCCCCCCSTATTTTCCTCTTCCATGGAACAGAGATATTGATCTGACTGGTTCAATCTCATGCTTTCTTTTTTTCTTATTTTCTCTCTTCGAGAGAGAAAAACAACAACAACAATGAGTGAGTGATGATGTCATTGTTGAAAATGTGTTACAGCAGACAACATAGTCAGTGTACAGAGAATGATCAGAGTTGAGCAGGGCGACGACAGAATATGCTATGCCCTCTATTCGAAAATTGTAGAAATTCGGAAAAGCCCCAAACCGTCAACTTTGAGCTCAAATATCTCGATTTCTGTGAAAGATACCAAAAAGTGGTCAACTGACAAAATGTTTATCATAATATCAAGCACATTTTATCAGTTAACCACTTTTTGATATCTGTTACAGTAACCGAGATAAATTGGCTCGAAATTGAAACTCCTAGTAGAGTGATTACGGTAGTTTTGCGTAGTAATTGTTCTCGGTGGTATCTTTAGATCCAGAATACGAGGCTCGTCGAGATCTATCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCATTAAAAACGAGACAAGAGA</pcr_primer_p1>
		<pcr_primer_p2>GTAACACATTTTCAACAATGACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCATTAAAAACGAGACAAGAGAATATTCGAGAAACAAAAAAGACAAAACGAAACACATGTGCTTCTCATTGTTGTTTCTGAATGAGTCCATAGTCCTCTTCCCCCCTTATTTTCCTCTTCCATGGAACAGAGATATTGATCTGACTGGTTCAATCTCATGCTTTCTTTTTTTCTTATTTTCTCTCTTCGAGAGAGAAAAACAACAACAACAATGAGTGAGTGATGATGTCATTGTTGAAAATGTGTTAC</canonical_amplicon>
		<polymorphic_amplicon>GTCATTAAAAACGAGACAAGAGAATATTCGAGAAACAAAAAAGACAAAACGAAACACATGTGCTTCTCATTGTTGTTTCTGAATGAGTCCATAGTCCTCTTCCCCCCSTATTTTCCTCTTCCATGGAACAGAGATATTGATCTGACTGGTTCAATCTCATGCTTTCTTTTTTTCTTATTTTCTCTCTTCGAGAGAGAAAAACAACAACAACAATGAGTGAGTGATGATGTCATTGTTGAAAATGTGTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38914</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>264019</contig_pos>
        <strand></strand>
        <context>cataatatca[A/G]gcacatttta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAAGATACCAAAAAGTGGTCAACTGACAAAATGTTTATCATAATATCA</left_flank>
        <right_flank>GCACATTTTATCAGTTAACCACTTTTTGATATCTGTTACAGTAACCGAGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCGTCTCATAAAAAATCGCTCAAAAAAAAAATCGACAACTCCATGTCCCTTTAAAGTCATTAAAAACGAGACAAGAGAATATTCGAGAAACAAAAAAGACAAAACGAAACACATGTGCTTCTCATTGTTGTTTCTGAATGAGTCCATAGTCCTCTTCCCCCCTTATTTTCCTCTTCCATGGAACAGAGATATTGATCTGACTGGTTCAATCTCATGCTTTCTTTTTTTCTTATTTTCTCTCTTCGAGAGAGAAAAACAACAACAACAATGAGTGAGTGATGATGTCATTGTTGAAAATGTGTTACAGCAGACAACATAGTCAGTGTACAGAGAATGATCAGAGTTGAGCAGGGCGACGACAGAATATGCTATGCCCTCTATTCGAAAATTGTAGAAATTCGGAAAAGCCCCAAACCGTCAACTTTGAGCTCAAATATCTCGATTTCTGTGAAAGATACCAAAAAGTGGTCAACTGACAAAATGTTTATCATAATATCAAGCACATTTTATCAGTTAACCACTTTTTGATATCTGTTACAGTAACCGAGATAAATTGGCTCGAAATTGAAACTCCTAGTAGAGTGATTACGGTAGTTTTGCGTAGTAATTGTTCTCGGTGGTATCTTTAGATCCAGAATACGAGGCTCGTCGAGATCTATCTGATACCCAAGCTGACTCAAAAAGCCATTAAAAATTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAAAATTCTTTCATCGAGAAAAACGCATCGAAAAATACGCTGAAAGCCCTTAGGGACGAGGTTTTTTTCTAGGCCGCTCGGTGAGTAANNNNNNNNNNAGATACATCGGAAAATTTGAAAAAACAGTGAAAACGAGCGAAAAAATTTTAAAAGTTTAAATTCGCGCGCTTTTACTCACCGGGCGGCCTAGAAAAAACCTCGTCCCTAAGGGCTT</canonical>
            <polymorphic>ACCGTCTCATAAAAAATCGCTCAAAAAAAAAATCGACAACTCCATGTCCCTTTAAAGTCATTAAAAACGAGACAAGAGAATATTCGAGAAACAAAAAAGACAAAACGAAACACATGTGCTTCTCATTGTTGTTTCTGAATGAGTCCATAGTCCTCTTCCCCCCTTATTTTCCTCTTCCATGGAACAGAGATATTGATCTGACTGGTTCAATCTCATGCTTTCTTTTTTTCTTATTTTCTCTCTTCGAGAGAGAAAAACAACAACAACAATGAGTGAGTGATGATGTCATTGTTGAAAATGTGTTACAGCAGACAACATAGTCAGTGTACAGAGAATGATCAGAGTTGAGCAGGGCGACGACAGAATATGCTATGCCCTCTATTCGAAAATTGTAGAAATTCGGAAAAGCCCCAAACCGTCAACTTTGAGCTCAAATATCTCGATTTCTGTGAAAGATACCAAAAAGTGGTCAACTGACAAAATGTTTATCATAATATCARGCACATTTTATCAGTTAACCACTTTTTGATATCTGTTACAGTAACCGAGATAAATTGGCTCGAAATTGAAACTCCTAGTAGAGTGATTACGGTAGTTTTGCGTAGTAATTGTTCTCGGTGGTATCTTTAGATCCAGAATACGAGGCTCGTCGAGATCTATCTGATACCCAAGCTGACTCAAAAAGCCATTAAAAATTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAAAATTCTTTCATCGAGAAAAACGCATCGAAAAATACGCTGAAAGCCCTTAGGGACGAGGTTTTTTTCTAGGCCGCTCGGTGAGTAANNNNNNNNNNAGATACATCGGAAAATTTGAAAAAACAGTGAAAACGAGCGAAAAAATTTTAAAAGTTTAAATTCGCGCGCTTTTACTCACCGGGCGGCCTAGAAAAAACCTCGTCCCTAAGGGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGAATATGCTATGCCCTCTAT</pcr_primer_p1>
		<pcr_primer_p2>ATTACTACGCAAAACTACCGTAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACAGAATATGCTATGCCCTCTATTCGAAAATTGTAGAAATTCGGAAAAGCCCCAAACCGTCAACTTTGAGCTCAAATATCTCGATTTCTGTGAAAGATACCAAAAAGTGGTCAACTGACAAAATGTTTATCATAATATCAAGCACATTTTATCAGTTAACCACTTTTTGATATCTGTTACAGTAACCGAGATAAATTGGCTCGAAATTGAAACTCCTAGTAGAGTGATTACGGTAGTTTTGCGTAGTAAT</canonical_amplicon>
		<polymorphic_amplicon>ACAGAATATGCTATGCCCTCTATTCGAAAATTGTAGAAATTCGGAAAAGCCCCAAACCGTCAACTTTGAGCTCAAATATCTCGATTTCTGTGAAAGATACCAAAAAGTGGTCAACTGACAAAATGTTTATCATAATATCARGCACATTTTATCAGTTAACCACTTTTTGATATCTGTTACAGTAACCGAGATAAATTGGCTCGAAATTGAAACTCCTAGTAGAGTGATTACGGTAGTTTTGCGTAGTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38915</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>274543</contig_pos>
        <strand></strand>
        <context>GAGATtattg[T/C]cgaattaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGCGTCTCTCACGCAACCATTAGAAGCTTAGGATATGAGAGAGATTATTG</left_flank>
        <right_flank>CGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGCGGCGACTGGATCCCTAGCTGGGCAATGGATCAGTTCCGAATGTGAGAATGTTGAAATGGCATATGTCTGTGAGATTCCGACTACTAGATCAGGTAAACTTTAAACCCAAGAGTGCCTTTCAGAGAGAAAAAAAATTAGTTTTCGTAGTTGACGACTTGTGTACTAAGGGCATGTTCTTCTTATCACTAAGATTGGGAATCTGATAAGCTATTGGCAAATAGGAGAAAAACTGTAAACAAAATGGCATTGAAATTTTGCACGCAATGAGGAAAGTGGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGCAACCATTAGAAGCTTAGGATATGAGAGAGATTATTGTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAACAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTCTTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTTTTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTTTGACGCACTTTTCGTAGATCAAAAAAAGCTACGCCTTTCAAATTTTCAGGTCCCACTTTTTTTAATTCGACAATATCCAATTTTTTCTATCTAATTTTCCGTTTTCTAGCTAATGTAAGAGTCGAGATACAGTCGTTTGAAGTTTAGAAAGCTAGAGACGCAGACAACGATACACTCTAAATGTCTGCGTCTCTCTTGCATTAAACCATAACATTTCCAGACACCTGCGCCCACAACTT</canonical>
            <polymorphic>CGGCGGCGACTGGATCCCTAGCTGGGCAATGGATCAGTTCCGAATGTGAGAATGTTGAAATGGCATATGTCTGTGAGATTCCGACTACTAGATCAGGTAAACTTTAAACCCAAGAGTGCCTTTCAGAGAGAAAAAAAATTAGTTTTCGTAGTTGACGACTTGTGTACTAAGGGCATGTTCTTCTTATCACTAAGATTGGGAATCTGATAAGCTATTGGCAAATAGGAGAAAAACTGTAAACAAAATGGCATTGAAATTTTGCACGCAATGAGGAAAGTGGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGCAACCATTAGAAGCTTAGGATATGAGAGAGATTATTGYCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAACAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTCTTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTTTTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTTTGACGCACTTTTCGTAGATCAAAAAAAGCTACGCCTTTCAAATTTTCAGGTCCCACTTTTTTTAATTCGACAATATCCAATTTTTTCTATCTAATTTTCCGTTTTCTAGCTAATGTAAGAGTCGAGATACAGTCGTTTGAAGTTTAGAAAGCTAGAGACGCAGACAACGATACACTCTAAATGTCTGCGTCTCTCTTGCATTAAACCATAACATTTCCAGACACCTGCGCCCACAACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 140 132 116 56 55</canonical_bands>
                <polymorphic_bands>557 140 132 116 55</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCGTACCATCTATAGAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTGTCTGGAAATGTTATGGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>707</pcr_amplicon_size>
		<canonical_amplicon>GGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGCAACCATTAGAAGCTTAGGATATGAGAGAGATTATTGTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAACAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTCTTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTTTTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTTTGACGCACTTTTCGTAGATCAAAAAAAGCTACGCCTTTCAAATTTTCAGGTCCCACTTTTTTTAATTCGACAATATCCAATTTTTTCTATCTAATTTTCCGTTTTCTAGCTAATGTAAGAGTCGAGATACAGTCGTTTGAAGTTTAGAAAGCTAGAGACGCAGACAACGATACACTCTAAATGTCTGCGTCTCTCTTGCATTAAACCATAACATTTCCAGACAC</canonical_amplicon>
		<polymorphic_amplicon>GGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGCAACCATTAGAAGCTTAGGATATGAGAGAGATTATTGYCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAACAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTCTTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTTTTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTTTGACGCACTTTTCGTAGATCAAAAAAAGCTACGCCTTTCAAATTTTCAGGTCCCACTTTTTTTAATTCGACAATATCCAATTTTTTCTATCTAATTTTCCGTTTTCTAGCTAATGTAAGAGTCGAGATACAGTCGTTTGAAGTTTAGAAAGCTAGAGACGCAGACAACGATACACTCTAAATGTCTGCGTCTCTCTTGCATTAAACCATAACATTTCCAGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38916</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>274592</contig_pos>
        <strand></strand>
        <context>ggcttcaaga[A/T]caattttcga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGA</left_flank>
        <right_flank>CAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATGTTGAAATGGCATATGTCTGTGAGATTCCGACTACTAGATCAGGTAAACTTTAAACCCAAGAGTGCCTTTCAGAGAGAAAAAAAATTAGTTTTCGTAGTTGACGACTTGTGTACTAAGGGCATGTTCTTCTTATCACTAAGATTGGGAATCTGATAAGCTATTGGCAAATAGGAGAAAAACTGTAAACAAAATGGCATTGAAATTTTGCACGCAATGAGGAAAGTGGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGCAACCATTAGAAGCTTAGGATATGAGAGAGATTATTGTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAACAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTCTTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTTTTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTTTGACGCACTTTTCGTAGATCAAAAAAAGCTACGCCTTTCAAATTTTCAGGTCCCACTTTTTTTAATTCGACAATATCCAATTTTTTCTATCTAATTTTCCGTTTTCTAGCTAATGTAAGAGTCGAGATACAGTCGTTTGAAGTTTAGAAAGCTAGAGACGCAGACAACGATACACTCTAAATGTCTGCGTCTCTCTTGCATTAAACCATAACATTTCCAGACACCTGCGCCCACAACTTCAACGGTTACTGCTACCTTCTCTCCCATGAAAACGCTACATCTCCAACT</canonical>
            <polymorphic>GAATGTTGAAATGGCATATGTCTGTGAGATTCCGACTACTAGATCAGGTAAACTTTAAACCCAAGAGTGCCTTTCAGAGAGAAAAAAAATTAGTTTTCGTAGTTGACGACTTGTGTACTAAGGGCATGTTCTTCTTATCACTAAGATTGGGAATCTGATAAGCTATTGGCAAATAGGAGAAAAACTGTAAACAAAATGGCATTGAAATTTTGCACGCAATGAGGAAAGTGGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGCAACCATTAGAAGCTTAGGATATGAGAGAGATTATTGTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAWCAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTCTTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTTTTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTTTGACGCACTTTTCGTAGATCAAAAAAAGCTACGCCTTTCAAATTTTCAGGTCCCACTTTTTTTAATTCGACAATATCCAATTTTTTCTATCTAATTTTCCGTTTTCTAGCTAATGTAAGAGTCGAGATACAGTCGTTTGAAGTTTAGAAAGCTAGAGACGCAGACAACGATACACTCTAAATGTCTGCGTCTCTCTTGCATTAAACCATAACATTTCCAGACACCTGCGCCCACAACTTCAACGGTTACTGCTACCTTCTCTCCCATGAAAACGCTACATCTCCAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCGTACCATCTATAGAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTGTCTGGAAATGTTATGGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>707</pcr_amplicon_size>
		<canonical_amplicon>GGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGCAACCATTAGAAGCTTAGGATATGAGAGAGATTATTGTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAACAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTCTTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTTTTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTTTGACGCACTTTTCGTAGATCAAAAAAAGCTACGCCTTTCAAATTTTCAGGTCCCACTTTTTTTAATTCGACAATATCCAATTTTTTCTATCTAATTTTCCGTTTTCTAGCTAATGTAAGAGTCGAGATACAGTCGTTTGAAGTTTAGAAAGCTAGAGACGCAGACAACGATACACTCTAAATGTCTGCGTCTCTCTTGCATTAAACCATAACATTTCCAGACAC</canonical_amplicon>
		<polymorphic_amplicon>GGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGCAACCATTAGAAGCTTAGGATATGAGAGAGATTATTGTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAWCAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTCTTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTTTTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTTTGACGCACTTTTCGTAGATCAAAAAAAGCTACGCCTTTCAAATTTTCAGGTCCCACTTTTTTTAATTCGACAATATCCAATTTTTTCTATCTAATTTTCCGTTTTCTAGCTAATGTAAGAGTCGAGATACAGTCGTTTGAAGTTTAGAAAGCTAGAGACGCAGACAACGATACACTCTAAATGTCTGCGTCTCTCTTGCATTAAACCATAACATTTCCAGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38917</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>274687</contig_pos>
        <strand></strand>
        <context>cttagatttc[T/C]tggtaggaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTC</left_flank>
        <right_flank>TGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTTTTTAATCGAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGTAGTTGACGACTTGTGTACTAAGGGCATGTTCTTCTTATCACTAAGATTGGGAATCTGATAAGCTATTGGCAAATAGGAGAAAAACTGTAAACAAAATGGCATTGAAATTTTGCACGCAATGAGGAAAGTGGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGCAACCATTAGAAGCTTAGGATATGAGAGAGATTATTGTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAACAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTCTTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTTTTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTTTGACGCACTTTTCGTAGATCAAAAAAAGCTACGCCTTTCAAATTTTCAGGTCCCACTTTTTTTAATTCGACAATATCCAATTTTTTCTATCTAATTTTCCGTTTTCTAGCTAATGTAAGAGTCGAGATACAGTCGTTTGAAGTTTAGAAAGCTAGAGACGCAGACAACGATACACTCTAAATGTCTGCGTCTCTCTTGCATTAAACCATAACATTTCCAGACACCTGCGCCCACAACTTCAACGGTTACTGCTACCTTCTCTCCCATGAAAACGCTACATCTCCAACTCTTCCATTCTCGGCTGCATTGGATTCTTGCCATCAGAATTGCGCCGATCTAGTCTCAATTCACTCAAAGAGAGAAATCTCTTACATTCAATCCCT</canonical>
            <polymorphic>TTCGTAGTTGACGACTTGTGTACTAAGGGCATGTTCTTCTTATCACTAAGATTGGGAATCTGATAAGCTATTGGCAAATAGGAGAAAAACTGTAAACAAAATGGCATTGAAATTTTGCACGCAATGAGGAAAGTGGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGCAACCATTAGAAGCTTAGGATATGAGAGAGATTATTGTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAACAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTCYTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTTTTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTTTGACGCACTTTTCGTAGATCAAAAAAAGCTACGCCTTTCAAATTTTCAGGTCCCACTTTTTTTAATTCGACAATATCCAATTTTTTCTATCTAATTTTCCGTTTTCTAGCTAATGTAAGAGTCGAGATACAGTCGTTTGAAGTTTAGAAAGCTAGAGACGCAGACAACGATACACTCTAAATGTCTGCGTCTCTCTTGCATTAAACCATAACATTTCCAGACACCTGCGCCCACAACTTCAACGGTTACTGCTACCTTCTCTCCCATGAAAACGCTACATCTCCAACTCTTCCATTCTCGGCTGCATTGGATTCTTGCCATCAGAATTGCGCCGATCTAGTCTCAATTCACTCAAAGAGAGAAATCTCTTACATTCAATCCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCGTACCATCTATAGAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTGTCTGGAAATGTTATGGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>707</pcr_amplicon_size>
		<canonical_amplicon>GGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGCAACCATTAGAAGCTTAGGATATGAGAGAGATTATTGTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAACAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTCTTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTTTTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTTTGACGCACTTTTCGTAGATCAAAAAAAGCTACGCCTTTCAAATTTTCAGGTCCCACTTTTTTTAATTCGACAATATCCAATTTTTTCTATCTAATTTTCCGTTTTCTAGCTAATGTAAGAGTCGAGATACAGTCGTTTGAAGTTTAGAAAGCTAGAGACGCAGACAACGATACACTCTAAATGTCTGCGTCTCTCTTGCATTAAACCATAACATTTCCAGACAC</canonical_amplicon>
		<polymorphic_amplicon>GGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGCAACCATTAGAAGCTTAGGATATGAGAGAGATTATTGTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAACAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTCYTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTTTTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTTTGACGCACTTTTCGTAGATCAAAAAAAGCTACGCCTTTCAAATTTTCAGGTCCCACTTTTTTTAATTCGACAATATCCAATTTTTTCTATCTAATTTTCCGTTTTCTAGCTAATGTAAGAGTCGAGATACAGTCGTTTGAAGTTTAGAAAGCTAGAGACGCAGACAACGATACACTCTAAATGTCTGCGTCTCTCTTGCATTAAACCATAACATTTCCAGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38918</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>274725</contig_pos>
        <strand></strand>
        <context>tagaatctgt[T/G]tttaatcgaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AACTTAGATTTCTTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGT</left_flank>
        <right_flank>TTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTATCACTAAGATTGGGAATCTGATAAGCTATTGGCAAATAGGAGAAAAACTGTAAACAAAATGGCATTGAAATTTTGCACGCAATGAGGAAAGTGGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGCAACCATTAGAAGCTTAGGATATGAGAGAGATTATTGTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAACAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTCTTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTTTTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTTTGACGCACTTTTCGTAGATCAAAAAAAGCTACGCCTTTCAAATTTTCAGGTCCCACTTTTTTTAATTCGACAATATCCAATTTTTTCTATCTAATTTTCCGTTTTCTAGCTAATGTAAGAGTCGAGATACAGTCGTTTGAAGTTTAGAAAGCTAGAGACGCAGACAACGATACACTCTAAATGTCTGCGTCTCTCTTGCATTAAACCATAACATTTCCAGACACCTGCGCCCACAACTTCAACGGTTACTGCTACCTTCTCTCCCATGAAAACGCTACATCTCCAACTCTTCCATTCTCGGCTGCATTGGATTCTTGCCATCAGAATTGCGCCGATCTAGTCTCAATTCACTCAAAGAGAGAAATCTCTTACATTCAATCCCTTTACACTGGATCTAACATCTCCACAACCATGATCGGAG</canonical>
            <polymorphic>CTTATCACTAAGATTGGGAATCTGATAAGCTATTGGCAAATAGGAGAAAAACTGTAAACAAAATGGCATTGAAATTTTGCACGCAATGAGGAAAGTGGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGCAACCATTAGAAGCTTAGGATATGAGAGAGATTATTGTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAACAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTCTTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTKTTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTTTGACGCACTTTTCGTAGATCAAAAAAAGCTACGCCTTTCAAATTTTCAGGTCCCACTTTTTTTAATTCGACAATATCCAATTTTTTCTATCTAATTTTCCGTTTTCTAGCTAATGTAAGAGTCGAGATACAGTCGTTTGAAGTTTAGAAAGCTAGAGACGCAGACAACGATACACTCTAAATGTCTGCGTCTCTCTTGCATTAAACCATAACATTTCCAGACACCTGCGCCCACAACTTCAACGGTTACTGCTACCTTCTCTCCCATGAAAACGCTACATCTCCAACTCTTCCATTCTCGGCTGCATTGGATTCTTGCCATCAGAATTGCGCCGATCTAGTCTCAATTCACTCAAAGAGAGAAATCTCTTACATTCAATCCCTTTACACTGGATCTAACATCTCCACAACCATGATCGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCGTACCATCTATAGAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTGTCTGGAAATGTTATGGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>707</pcr_amplicon_size>
		<canonical_amplicon>GGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGCAACCATTAGAAGCTTAGGATATGAGAGAGATTATTGTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAACAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTCTTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTTTTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTTTGACGCACTTTTCGTAGATCAAAAAAAGCTACGCCTTTCAAATTTTCAGGTCCCACTTTTTTTAATTCGACAATATCCAATTTTTTCTATCTAATTTTCCGTTTTCTAGCTAATGTAAGAGTCGAGATACAGTCGTTTGAAGTTTAGAAAGCTAGAGACGCAGACAACGATACACTCTAAATGTCTGCGTCTCTCTTGCATTAAACCATAACATTTCCAGACAC</canonical_amplicon>
		<polymorphic_amplicon>GGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGCAACCATTAGAAGCTTAGGATATGAGAGAGATTATTGTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAACAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTCTTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTKTTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTTTGACGCACTTTTCGTAGATCAAAAAAAGCTACGCCTTTCAAATTTTCAGGTCCCACTTTTTTTAATTCGACAATATCCAATTTTTTCTATCTAATTTTCCGTTTTCTAGCTAATGTAAGAGTCGAGATACAGTCGTTTGAAGTTTAGAAAGCTAGAGACGCAGACAACGATACACTCTAAATGTCTGCGTCTCTCTTGCATTAAACCATAACATTTCCAGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38919</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>274807</contig_pos>
        <strand></strand>
        <context>tacttttttg[A/C]cgyacttttc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTTTG</left_flank>
        <right_flank>CGCACTTTTCGTAGATCAAAAAAAGCTACGCCTTTCAAATTTTCAGGTCC</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAATGAGGAAAGTGGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGCAACCATTAGAAGCTTAGGATATGAGAGAGATTATTGTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAACAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTCTTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTTTTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTTTGACGCACTTTTCGTAGATCAAAAAAAGCTACGCCTTTCAAATTTTCAGGTCCCACTTTTTTTAATTCGACAATATCCAATTTTTTCTATCTAATTTTCCGTTTTCTAGCTAATGTAAGAGTCGAGATACAGTCGTTTGAAGTTTAGAAAGCTAGAGACGCAGACAACGATACACTCTAAATGTCTGCGTCTCTCTTGCATTAAACCATAACATTTCCAGACACCTGCGCCCACAACTTCAACGGTTACTGCTACCTTCTCTCCCATGAAAACGCTACATCTCCAACTCTTCCATTCTCGGCTGCATTGGATTCTTGCCATCAGAATTGCGCCGATCTAGTCTCAATTCACTCAAAGAGAGAAATCTCTTACATTCAATCCCTTTACACTGGATCTAACATCTCCACAACCATGATCGGAGCACTGACTACATCTCCGTTGACTCCATATTGGATTGACCAGTCTAGATGGGATTATAACCATGTTAGTCCGAGATCTGGCTC</canonical>
            <polymorphic>GCAATGAGGAAAGTGGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGCAACCATTAGAAGCTTAGGATATGAGAGAGATTATTGTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAACAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTCTTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTTTTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTTTGMCGCACTTTTCGTAGATCAAAAAAAGCTACGCCTTTCAAATTTTCAGGTCCCACTTTTTTTAATTCGACAATATCCAATTTTTTCTATCTAATTTTCCGTTTTCTAGCTAATGTAAGAGTCGAGATACAGTCGTTTGAAGTTTAGAAAGCTAGAGACGCAGACAACGATACACTCTAAATGTCTGCGTCTCTCTTGCATTAAACCATAACATTTCCAGACACCTGCGCCCACAACTTCAACGGTTACTGCTACCTTCTCTCCCATGAAAACGCTACATCTCCAACTCTTCCATTCTCGGCTGCATTGGATTCTTGCCATCAGAATTGCGCCGATCTAGTCTCAATTCACTCAAAGAGAGAAATCTCTTACATTCAATCCCTTTACACTGGATCTAACATCTCCACAACCATGATCGGAGCACTGACTACATCTCCGTTGACTCCATATTGGATTGACCAGTCTAGATGGGATTATAACCATGTTAGTCCGAGATCTGGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGCGTACCATCTATAGAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTGTCTGGAAATGTTATGGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>707</pcr_amplicon_size>
		<canonical_amplicon>GGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGCAACCATTAGAAGCTTAGGATATGAGAGAGATTATTGTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAACAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTCTTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTTTTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTTTGACGCACTTTTCGTAGATCAAAAAAAGCTACGCCTTTCAAATTTTCAGGTCCCACTTTTTTTAATTCGACAATATCCAATTTTTTCTATCTAATTTTCCGTTTTCTAGCTAATGTAAGAGTCGAGATACAGTCGTTTGAAGTTTAGAAAGCTAGAGACGCAGACAACGATACACTCTAAATGTCTGCGTCTCTCTTGCATTAAACCATAACATTTCCAGACAC</canonical_amplicon>
		<polymorphic_amplicon>GGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGCAACCATTAGAAGCTTAGGATATGAGAGAGATTATTGTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAACAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTCTTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTTTTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTTTGMCGCACTTTTCGTAGATCAAAAAAAGCTACGCCTTTCAAATTTTCAGGTCCCACTTTTTTTAATTCGACAATATCCAATTTTTTCTATCTAATTTTCCGTTTTCTAGCTAATGTAAGAGTCGAGATACAGTCGTTTGAAGTTTAGAAAGCTAGAGACGCAGACAACGATACACTCTAAATGTCTGCGTCTCTCTTGCATTAAACCATAACATTTCCAGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38920</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>274810</contig_pos>
        <strand></strand>
        <context>ttttttgmcg[C/T]acttttcgta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTTTGACG</left_flank>
        <right_flank>ACTTTTCGTAGATCAAAAAAAGCTACGCCTTTCAAATTTTCAGGTCCCAC</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAGGAAAGTGGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGCAACCATTAGAAGCTTAGGATATGAGAGAGATTATTGTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAACAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTCTTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTTTTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTTTGACGCACTTTTCGTAGATCAAAAAAAGCTACGCCTTTCAAATTTTCAGGTCCCACTTTTTTTAATTCGACAATATCCAATTTTTTCTATCTAATTTTCCGTTTTCTAGCTAATGTAAGAGTCGAGATACAGTCGTTTGAAGTTTAGAAAGCTAGAGACGCAGACAACGATACACTCTAAATGTCTGCGTCTCTCTTGCATTAAACCATAACATTTCCAGACACCTGCGCCCACAACTTCAACGGTTACTGCTACCTTCTCTCCCATGAAAACGCTACATCTCCAACTCTTCCATTCTCGGCTGCATTGGATTCTTGCCATCAGAATTGCGCCGATCTAGTCTCAATTCACTCAAAGAGAGAAATCTCTTACATTCAATCCCTTTACACTGGATCTAACATCTCCACAACCATGATCGGAGCACTGACTACATCTCCGTTGACTCCATATTGGATTGACCAGTCTAGATGGGATTATAACCATGTTAGTCCGAGATCTGGCTCATC</canonical>
            <polymorphic>ATGAGGAAAGTGGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGCAACCATTAGAAGCTTAGGATATGAGAGAGATTATTGTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAACAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTCTTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTTTTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTTTGACGYACTTTTCGTAGATCAAAAAAAGCTACGCCTTTCAAATTTTCAGGTCCCACTTTTTTTAATTCGACAATATCCAATTTTTTCTATCTAATTTTCCGTTTTCTAGCTAATGTAAGAGTCGAGATACAGTCGTTTGAAGTTTAGAAAGCTAGAGACGCAGACAACGATACACTCTAAATGTCTGCGTCTCTCTTGCATTAAACCATAACATTTCCAGACACCTGCGCCCACAACTTCAACGGTTACTGCTACCTTCTCTCCCATGAAAACGCTACATCTCCAACTCTTCCATTCTCGGCTGCATTGGATTCTTGCCATCAGAATTGCGCCGATCTAGTCTCAATTCACTCAAAGAGAGAAATCTCTTACATTCAATCCCTTTACACTGGATCTAACATCTCCACAACCATGATCGGAGCACTGACTACATCTCCGTTGACTCCATATTGGATTGACCAGTCTAGATGGGATTATAACCATGTTAGTCCGAGATCTGGCTCATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>152 119 117 93 88 83 61 56 49 48 38 28 18 17 12 11 10</canonical_bands>
                <polymorphic_bands>200 119 117 93 88 83 61 56 49 38 28 18 17 12 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCGTACCATCTATAGAACTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTGTCTGGAAATGTTATGGTTTA</pcr_primer_p2>
		<pcr_amplicon_size>707</pcr_amplicon_size>
		<canonical_amplicon>GGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGCAACCATTAGAAGCTTAGGATATGAGAGAGATTATTGTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAACAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTCTTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTTTTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTTTGACGCACTTTTCGTAGATCAAAAAAAGCTACGCCTTTCAAATTTTCAGGTCCCACTTTTTTTAATTCGACAATATCCAATTTTTTCTATCTAATTTTCCGTTTTCTAGCTAATGTAAGAGTCGAGATACAGTCGTTTGAAGTTTAGAAAGCTAGAGACGCAGACAACGATACACTCTAAATGTCTGCGTCTCTCTTGCATTAAACCATAACATTTCCAGACAC</canonical_amplicon>
		<polymorphic_amplicon>GGCGTACCATCTATAGAACTTTTTTAAATCTTATTACAGATCATGCCAGTAAATAAAAACCTAGAATATTTGAAATATGTTCCAACAAAAATCACTTTCCTAGCCTAACTAGAAGCCAAGATATGGGTATTTAAAGGTTAGAGACGCAGATAGCAAGACGCTCTAACTGCCTGCGTCTCTCACGCAACCATTAGAAGCTTAGGATATGAGAGAGATTATTGTCGAATTAAAAAAAGTGGGACCTGGAAAATTTCGCGGGCGGCTTCAAGAACAATTTTCGAGGCCTTGCCCCAGAAACACTACGGTAGTGAACGAAACTTATTTCTGGGAATTTAGTGGGATTTTCTGAACAAAACTTAGATTTCTTGGTAGGAAAATGATCGCTAGCATCTTTAGAATCTGTTTTTAATCGAAAACCGAACTTAGCGAAAGTAGCTTGAACGAGGCCTCATCAGAAGGCGAACATCAGAAATATTACTTTTTTGACGYACTTTTCGTAGATCAAAAAAAGCTACGCCTTTCAAATTTTCAGGTCCCACTTTTTTTAATTCGACAATATCCAATTTTTTCTATCTAATTTTCCGTTTTCTAGCTAATGTAAGAGTCGAGATACAGTCGTTTGAAGTTTAGAAAGCTAGAGACGCAGACAACGATACACTCTAAATGTCTGCGTCTCTCTTGCATTAAACCATAACATTTCCAGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38921</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>275720</contig_pos>
        <strand>+</strand>
        <context>TAGCTCGAAT[A/T]TTTTGACTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATTCAGACAAGCTGTAAGCCCTTTTCCGTACTACTACAGTAGCTCGAAT</left_flank>
        <right_flank>TTTTGACTGTTATTTCCGTATCCACCACTAATCAAGGCTATCGTGGTTGG</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGAGCACTGACTACATCTCCGTTGACTCCATATTGGATTGACCAGTCTAGATGGGATTATAACCATGTTAGTCCGAGATCTGGCTCATCTGGCAGCTGCTTCCAAATGGCGGTGTCTACAGATGGTACCTGGTATCAAGTGGATTGCAAAACCAGTCAGTACTTTGTATGTAAACGTCCAAATGGAATCACCTGTAATAATACACCAGCACCCCCAGTAATTGTCACTCCTGCTCCTACAAATCCATCTGGCTGTAATTCCACAACTCTCTTTGATTCTGGATATATCACGTCTCCTAACTACCCAACCAGTTTTGTATATTCATATTGTGTTTATAAGATCTCCACGTTAGGTCCGTATAGAATCGGATTGTATTTCTCTGACATCTACACTTATGATTCTTATACAAGTGTTCAGGTTTTGGATTCAGATGGAAAAGTTTTGGGAACATTCAGACAAGCTGTAAGCCCTTTTCCGTACTACTACAGTAGCTCGAATATTTTGACTGTTATTTCCGTATCCACCACTAATCAAGGCTATCGTGGTTGGGCAGCGAAGTTTTTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAAAAAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAAATTCTAGAAAATTAAGAAAATCAAAAAATCTCTAAATTTCTAAATTTCTAAAAATCTAAAACTTAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGGCCAATAAATT</canonical>
            <polymorphic>CGGAGCACTGACTACATCTCCGTTGACTCCATATTGGATTGACCAGTCTAGATGGGATTATAACCATGTTAGTCCGAGATCTGGCTCATCTGGCAGCTGCTTCCAAATGGCGGTGTCTACAGATGGTACCTGGTATCAAGTGGATTGCAAAACCAGTCAGTACTTTGTATGTAAACGTCCAAATGGAATCACCTGTAATAATACACCAGCACCCCCAGTAATTGTCACTCCTGCTCCTACAAATCCATCTGGCTGTAATTCCACAACTCTCTTTGATTCTGGATATATCACGTCTCCTAACTACCCAACCAGTTTTGTATATTCATATTGTGTTTATAAGATCTCCACGTTAGGTCCGTATAGAATCGGATTGTATTTCTCTGACATCTACACTTATGATTCTTATACAAGTGTTCAGGTTTTGGATTCAGATGGAAAAGTTTTGGGAACATTCAGACAAGCTGTAAGCCCTTTTCCGTACTACTACAGTAGCTCGAATWTTTTGACTGTTATTTCCGTATCCACCACTAATCAAGGCTATCGTGGTTGGGCAGCGAAGTTTTTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAAAAAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAAATTCTAGAAAATTAAGAAAATCAAAAAATCTCTAAATTTCTAAATTTCTAAAAATCTAAAACTTAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGGCCAATAAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>499 257 126 118</canonical_bands>
                <polymorphic_bands>625 257 118</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTGTTTATAAGATCTCCACGTTA</pcr_primer_p1>
		<pcr_primer_p2>CCATCAAAACGATAAAAACTTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGTGTTTATAAGATCTCCACGTTAGGTCCGTATAGAATCGGATTGTATTTCTCTGACATCTACACTTATGATTCTTATACAAGTGTTCAGGTTTTGGATTCAGATGGAAAAGTTTTGGGAACATTCAGACAAGCTGTAAGCCCTTTTCCGTACTACTACAGTAGCTCGAATATTTTGACTGTTATTTCCGTATCCACCACTAATCAAGGCTATCGTGGTTGGGCAGCGAAGTTTTTATCGTTTTGATGG</canonical_amplicon>
		<polymorphic_amplicon>TGTGTTTATAAGATCTCCACGTTAGGTCCGTATAGAATCGGATTGTATTTCTCTGACATCTACACTTATGATTCTTATACAAGTGTTCAGGTTTTGGATTCAGATGGAAAAGTTTTGGGAACATTCAGACAAGCTGTAAGCCCTTTTCCGTACTACTACAGTAGCTCGAATWTTTTGACTGTTATTTCCGTATCCACCACTAATCAAGGCTATCGTGGTTGGGCAGCGAAGTTTTTATCGTTTTGATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38922</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>275887</contig_pos>
        <strand>+</strand>
        <context>CGGAGGTTCT[A/G]GAAGTTTTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCT</left_flank>
        <right_flank>GAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATGTAAACGTCCAAATGGAATCACCTGTAATAATACACCAGCACCCCCAGTAATTGTCACTCCTGCTCCTACAAATCCATCTGGCTGTAATTCCACAACTCTCTTTGATTCTGGATATATCACGTCTCCTAACTACCCAACCAGTTTTGTATATTCATATTGTGTTTATAAGATCTCCACGTTAGGTCCGTATAGAATCGGATTGTATTTCTCTGACATCTACACTTATGATTCTTATACAAGTGTTCAGGTTTTGGATTCAGATGGAAAAGTTTTGGGAACATTCAGACAAGCTGTAAGCCCTTTTCCGTACTACTACAGTAGCTCGAATATTTTGACTGTTATTTCCGTATCCACCACTAATCAAGGCTATCGTGGTTGGGCAGCGAAGTTTTTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAAAAAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAAATTCTAGAAAATTAAGAAAATCAAAAAATCTCTAAATTTCTAAATTTCTAAAAATCTAAAACTTAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGGCCAATAAATTGAGAAGAACCGTGTCGCAAAATCGATTTATTTCGCTGATTTTTCTCGATTTTTCTGACAATTTTTTTTCAGTTAAATTTTGATTTTCGGTTGTTTTTTTGCCCCATTTTAGGTGTTTCTTTTTTTCTTAATTCAAAAATTTGAATTTCCAACCGATTTTGATGATTT</canonical>
            <polymorphic>TATGTAAACGTCCAAATGGAATCACCTGTAATAATACACCAGCACCCCCAGTAATTGTCACTCCTGCTCCTACAAATCCATCTGGCTGTAATTCCACAACTCTCTTTGATTCTGGATATATCACGTCTCCTAACTACCCAACCAGTTTTGTATATTCATATTGTGTTTATAAGATCTCCACGTTAGGTCCGTATAGAATCGGATTGTATTTCTCTGACATCTACACTTATGATTCTTATACAAGTGTTCAGGTTTTGGATTCAGATGGAAAAGTTTTGGGAACATTCAGACAAGCTGTAAGCCCTTTTCCGTACTACTACAGTAGCTCGAATATTTTGACTGTTATTTCCGTATCCACCACTAATCAAGGCTATCGTGGTTGGGCAGCGAAGTTTTTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTRGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAAAAAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAAATTCTAGAAAATTAAGAAAATCAAAAAATCTCTAAATTTCTAAATTTCTAAAAATCTAAAACTTAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGGCCAATAAATTGAGAAGAACCGTGTCGCAAAATCGATTTATTTCGCTGATTTTTCTCGATTTTTCTGACAATTTTTTTTCAGTTAAATTTTGATTTTCGGTTGTTTTTTTGCCCCATTTTAGGTGTTTCTTTTTTTCTTAATTCAAAAATTTGAATTTCCAACCGATTTTGATGATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATCGTTTTGATGGGAATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTAGGAATTTTTGAAGTTGTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAA</canonical_amplicon>
		<polymorphic_amplicon>TTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTRGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38923</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>275902</contig_pos>
        <strand>+</strand>
        <context>TTTTCAAAAA[A/G]TCTGAAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAA</left_flank>
        <right_flank>TCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGAATCACCTGTAATAATACACCAGCACCCCCAGTAATTGTCACTCCTGCTCCTACAAATCCATCTGGCTGTAATTCCACAACTCTCTTTGATTCTGGATATATCACGTCTCCTAACTACCCAACCAGTTTTGTATATTCATATTGTGTTTATAAGATCTCCACGTTAGGTCCGTATAGAATCGGATTGTATTTCTCTGACATCTACACTTATGATTCTTATACAAGTGTTCAGGTTTTGGATTCAGATGGAAAAGTTTTGGGAACATTCAGACAAGCTGTAAGCCCTTTTCCGTACTACTACAGTAGCTCGAATATTTTGACTGTTATTTCCGTATCCACCACTAATCAAGGCTATCGTGGTTGGGCAGCGAAGTTTTTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAAAAAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAAATTCTAGAAAATTAAGAAAATCAAAAAATCTCTAAATTTCTAAATTTCTAAAAATCTAAAACTTAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGGCCAATAAATTGAGAAGAACCGTGTCGCAAAATCGATTTATTTCGCTGATTTTTCTCGATTTTTCTGACAATTTTTTTTCAGTTAAATTTTGATTTTCGGTTGTTTTTTTGCCCCATTTTAGGTGTTTCTTTTTTTCTTAATTCAAAAATTTGAATTTCCAACCGATTTTGATGATTTTGGGCTCATTTTTAC</canonical>
            <polymorphic>ATGGAATCACCTGTAATAATACACCAGCACCCCCAGTAATTGTCACTCCTGCTCCTACAAATCCATCTGGCTGTAATTCCACAACTCTCTTTGATTCTGGATATATCACGTCTCCTAACTACCCAACCAGTTTTGTATATTCATATTGTGTTTATAAGATCTCCACGTTAGGTCCGTATAGAATCGGATTGTATTTCTCTGACATCTACACTTATGATTCTTATACAAGTGTTCAGGTTTTGGATTCAGATGGAAAAGTTTTGGGAACATTCAGACAAGCTGTAAGCCCTTTTCCGTACTACTACAGTAGCTCGAATATTTTGACTGTTATTTCCGTATCCACCACTAATCAAGGCTATCGTGGTTGGGCAGCGAAGTTTTTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAARTCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAAAAAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAAATTCTAGAAAATTAAGAAAATCAAAAAATCTCTAAATTTCTAAATTTCTAAAAATCTAAAACTTAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGGCCAATAAATTGAGAAGAACCGTGTCGCAAAATCGATTTATTTCGCTGATTTTTCTCGATTTTTCTGACAATTTTTTTTCAGTTAAATTTTGATTTTCGGTTGTTTTTTTGCCCCATTTTAGGTGTTTCTTTTTTTCTTAATTCAAAAATTTGAATTTCCAACCGATTTTGATGATTTTGGGCTCATTTTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATCGTTTTGATGGGAATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTAGGAATTTTTGAAGTTGTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAA</canonical_amplicon>
		<polymorphic_amplicon>TTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAARTCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38924</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>275918</contig_pos>
        <strand>+</strand>
        <context>AATTTGGGAA[A/T]TTCTGATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAA</left_flank>
        <right_flank>TTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATACACCAGCACCCCCAGTAATTGTCACTCCTGCTCCTACAAATCCATCTGGCTGTAATTCCACAACTCTCTTTGATTCTGGATATATCACGTCTCCTAACTACCCAACCAGTTTTGTATATTCATATTGTGTTTATAAGATCTCCACGTTAGGTCCGTATAGAATCGGATTGTATTTCTCTGACATCTACACTTATGATTCTTATACAAGTGTTCAGGTTTTGGATTCAGATGGAAAAGTTTTGGGAACATTCAGACAAGCTGTAAGCCCTTTTCCGTACTACTACAGTAGCTCGAATATTTTGACTGTTATTTCCGTATCCACCACTAATCAAGGCTATCGTGGTTGGGCAGCGAAGTTTTTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAAAAAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAAATTCTAGAAAATTAAGAAAATCAAAAAATCTCTAAATTTCTAAATTTCTAAAAATCTAAAACTTAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGGCCAATAAATTGAGAAGAACCGTGTCGCAAAATCGATTTATTTCGCTGATTTTTCTCGATTTTTCTGACAATTTTTTTTCAGTTAAATTTTGATTTTCGGTTGTTTTTTTGCCCCATTTTAGGTGTTTCTTTTTTTCTTAATTCAAAAATTTGAATTTCCAACCGATTTTGATGATTTTGGGCTCATTTTTACGCAACATTTTCCACTT</canonical>
            <polymorphic>TAATACACCAGCACCCCCAGTAATTGTCACTCCTGCTCCTACAAATCCATCTGGCTGTAATTCCACAACTCTCTTTGATTCTGGATATATCACGTCTCCTAACTACCCAACCAGTTTTGTATATTCATATTGTGTTTATAAGATCTCCACGTTAGGTCCGTATAGAATCGGATTGTATTTCTCTGACATCTACACTTATGATTCTTATACAAGTGTTCAGGTTTTGGATTCAGATGGAAAAGTTTTGGGAACATTCAGACAAGCTGTAAGCCCTTTTCCGTACTACTACAGTAGCTCGAATATTTTGACTGTTATTTCCGTATCCACCACTAATCAAGGCTATCGTGGTTGGGCAGCGAAGTTTTTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAWTTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAAAAAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAAATTCTAGAAAATTAAGAAAATCAAAAAATCTCTAAATTTCTAAATTTCTAAAAATCTAAAACTTAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGGCCAATAAATTGAGAAGAACCGTGTCGCAAAATCGATTTATTTCGCTGATTTTTCTCGATTTTTCTGACAATTTTTTTTCAGTTAAATTTTGATTTTCGGTTGTTTTTTTGCCCCATTTTAGGTGTTTCTTTTTTTCTTAATTCAAAAATTTGAATTTCCAACCGATTTTGATGATTTTGGGCTCATTTTTACGCAACATTTTCCACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>380 155 102 62 56 41 35 34 29 25 18 9 9 8 8 8 8 7 6</canonical_bands>
                <polymorphic_bands>380 155 102 62 56 41 38 35 34 25 18 9 8 8 8 8 7 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>322 102 62 56 54 41 37 36 34 29 25 25 21 18 16 16 15 10 10 9 9 8 8 8 8 8 7 6</canonical_bands>
                <polymorphic_bands>322 102 62 56 54 41 38 37 36 34 25 25 21 18 16 16 15 10 10 9 8 8 8 8 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATCGTTTTGATGGGAATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTAGGAATTTTTGAAGTTGTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAA</canonical_amplicon>
		<polymorphic_amplicon>TTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAWTTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38925</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>275953</contig_pos>
        <strand></strand>
        <context>AAAAATTCAG[A/G]AAATTCAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAG</left_flank>
        <right_flank>AAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCTACAAATCCATCTGGCTGTAATTCCACAACTCTCTTTGATTCTGGATATATCACGTCTCCTAACTACCCAACCAGTTTTGTATATTCATATTGTGTTTATAAGATCTCCACGTTAGGTCCGTATAGAATCGGATTGTATTTCTCTGACATCTACACTTATGATTCTTATACAAGTGTTCAGGTTTTGGATTCAGATGGAAAAGTTTTGGGAACATTCAGACAAGCTGTAAGCCCTTTTCCGTACTACTACAGTAGCTCGAATATTTTGACTGTTATTTCCGTATCCACCACTAATCAAGGCTATCGTGGTTGGGCAGCGAAGTTTTTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAAAAAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAAATTCTAGAAAATTAAGAAAATCAAAAAATCTCTAAATTTCTAAATTTCTAAAAATCTAAAACTTAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGGCCAATAAATTGAGAAGAACCGTGTCGCAAAATCGATTTATTTCGCTGATTTTTCTCGATTTTTCTGACAATTTTTTTTCAGTTAAATTTTGATTTTCGGTTGTTTTTTTGCCCCATTTTAGGTGTTTCTTTTTTTCTTAATTCAAAAATTTGAATTTCCAACCGATTTTGATGATTTTGGGCTCATTTTTACGCAACATTTTCCACTTTTCATTTCAGATTCTCGCCCCCACCCCCTCCGAAA</canonical>
            <polymorphic>CTCCTACAAATCCATCTGGCTGTAATTCCACAACTCTCTTTGATTCTGGATATATCACGTCTCCTAACTACCCAACCAGTTTTGTATATTCATATTGTGTTTATAAGATCTCCACGTTAGGTCCGTATAGAATCGGATTGTATTTCTCTGACATCTACACTTATGATTCTTATACAAGTGTTCAGGTTTTGGATTCAGATGGAAAAGTTTTGGGAACATTCAGACAAGCTGTAAGCCCTTTTCCGTACTACTACAGTAGCTCGAATATTTTGACTGTTATTTCCGTATCCACCACTAATCAAGGCTATCGTGGTTGGGCAGCGAAGTTTTTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGRAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAAAAAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAAATTCTAGAAAATTAAGAAAATCAAAAAATCTCTAAATTTCTAAATTTCTAAAAATCTAAAACTTAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGGCCAATAAATTGAGAAGAACCGTGTCGCAAAATCGATTTATTTCGCTGATTTTTCTCGATTTTTCTGACAATTTTTTTTCAGTTAAATTTTGATTTTCGGTTGTTTTTTTGCCCCATTTTAGGTGTTTCTTTTTTTCTTAATTCAAAAATTTGAATTTCCAACCGATTTTGATGATTTTGGGCTCATTTTTACGCAACATTTTCCACTTTTCATTTCAGATTCTCGCCCCCACCCCCTCCGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>289 203 152 135 48 35 29 27 25 22 17 14 4</canonical_bands>
                <polymorphic_bands>289 203 152 135 64 48 27 25 22 17 14 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATCGTTTTGATGGGAATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTAGGAATTTTTGAAGTTGTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAA</canonical_amplicon>
		<polymorphic_amplicon>TTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGRAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38926</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>275977</contig_pos>
        <strand></strand>
        <context>TTTGAAAATT[T/C]AGAAATTCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATT</left_flank>
        <right_flank>AGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCCACAACTCTCTTTGATTCTGGATATATCACGTCTCCTAACTACCCAACCAGTTTTGTATATTCATATTGTGTTTATAAGATCTCCACGTTAGGTCCGTATAGAATCGGATTGTATTTCTCTGACATCTACACTTATGATTCTTATACAAGTGTTCAGGTTTTGGATTCAGATGGAAAAGTTTTGGGAACATTCAGACAAGCTGTAAGCCCTTTTCCGTACTACTACAGTAGCTCGAATATTTTGACTGTTATTTCCGTATCCACCACTAATCAAGGCTATCGTGGTTGGGCAGCGAAGTTTTTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAAAAAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAAATTCTAGAAAATTAAGAAAATCAAAAAATCTCTAAATTTCTAAATTTCTAAAAATCTAAAACTTAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGGCCAATAAATTGAGAAGAACCGTGTCGCAAAATCGATTTATTTCGCTGATTTTTCTCGATTTTTCTGACAATTTTTTTTCAGTTAAATTTTGATTTTCGGTTGTTTTTTTGCCCCATTTTAGGTGTTTCTTTTTTTCTTAATTCAAAAATTTGAATTTCCAACCGATTTTGATGATTTTGGGCTCATTTTTACGCAACATTTTCCACTTTTCATTTCAGATTCTCGCCCCCACCCCCTCCGAAAAATGTCCGAATTCAACAAGGAAGT</canonical>
            <polymorphic>ATTCCACAACTCTCTTTGATTCTGGATATATCACGTCTCCTAACTACCCAACCAGTTTTGTATATTCATATTGTGTTTATAAGATCTCCACGTTAGGTCCGTATAGAATCGGATTGTATTTCTCTGACATCTACACTTATGATTCTTATACAAGTGTTCAGGTTTTGGATTCAGATGGAAAAGTTTTGGGAACATTCAGACAAGCTGTAAGCCCTTTTCCGTACTACTACAGTAGCTCGAATATTTTGACTGTTATTTCCGTATCCACCACTAATCAAGGCTATCGTGGTTGGGCAGCGAAGTTTTTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTYAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAAAAAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAAATTCTAGAAAATTAAGAAAATCAAAAAATCTCTAAATTTCTAAATTTCTAAAAATCTAAAACTTAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGGCCAATAAATTGAGAAGAACCGTGTCGCAAAATCGATTTATTTCGCTGATTTTTCTCGATTTTTCTGACAATTTTTTTTCAGTTAAATTTTGATTTTCGGTTGTTTTTTTGCCCCATTTTAGGTGTTTCTTTTTTTCTTAATTCAAAAATTTGAATTTCCAACCGATTTTGATGATTTTGGGCTCATTTTTACGCAACATTTTCCACTTTTCATTTCAGATTCTCGCCCCCACCCCCTCCGAAAAATGTCCGAATTCAACAAGGAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>321 155 102 99 62 41 35 34 29 25 18 16 9 9 8 8 8 8 7 6</canonical_bands>
                <polymorphic_bands>321 155 102 99 62 41 35 34 29 26 25 16 9 9 8 8 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATCGTTTTGATGGGAATTT</pcr_primer_p1>
		<pcr_primer_p2>TTTAGGAATTTTTGAAGTTGTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAA</canonical_amplicon>
		<polymorphic_amplicon>TTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTYAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38927</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>275990</contig_pos>
        <strand>+</strand>
        <context>AAATTCGGAA[C/T]TTTTGAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAA</left_flank>
        <right_flank>TTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTGATTCTGGATATATCACGTCTCCTAACTACCCAACCAGTTTTGTATATTCATATTGTGTTTATAAGATCTCCACGTTAGGTCCGTATAGAATCGGATTGTATTTCTCTGACATCTACACTTATGATTCTTATACAAGTGTTCAGGTTTTGGATTCAGATGGAAAAGTTTTGGGAACATTCAGACAAGCTGTAAGCCCTTTTCCGTACTACTACAGTAGCTCGAATATTTTGACTGTTATTTCCGTATCCACCACTAATCAAGGCTATCGTGGTTGGGCAGCGAAGTTTTTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAAAAAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAAATTCTAGAAAATTAAGAAAATCAAAAAATCTCTAAATTTCTAAATTTCTAAAAATCTAAAACTTAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGGCCAATAAATTGAGAAGAACCGTGTCGCAAAATCGATTTATTTCGCTGATTTTTCTCGATTTTTCTGACAATTTTTTTTCAGTTAAATTTTGATTTTCGGTTGTTTTTTTGCCCCATTTTAGGTGTTTCTTTTTTTCTTAATTCAAAAATTTGAATTTCCAACCGATTTTGATGATTTTGGGCTCATTTTTACGCAACATTTTCCACTTTTCATTTCAGATTCTCGCCCCCACCCCCTCCGAAAAATGTCCGAATTCAACAAGGAAGTCTACAAATTTTGG</canonical>
            <polymorphic>CTTTGATTCTGGATATATCACGTCTCCTAACTACCCAACCAGTTTTGTATATTCATATTGTGTTTATAAGATCTCCACGTTAGGTCCGTATAGAATCGGATTGTATTTCTCTGACATCTACACTTATGATTCTTATACAAGTGTTCAGGTTTTGGATTCAGATGGAAAAGTTTTGGGAACATTCAGACAAGCTGTAAGCCCTTTTCCGTACTACTACAGTAGCTCGAATATTTTGACTGTTATTTCCGTATCCACCACTAATCAAGGCTATCGTGGTTGGGCAGCGAAGTTTTTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAYTTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAAAAAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAAATTCTAGAAAATTAAGAAAATCAAAAAATCTCTAAATTTCTAAATTTCTAAAAATCTAAAACTTAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGGCCAATAAATTGAGAAGAACCGTGTCGCAAAATCGATTTATTTCGCTGATTTTTCTCGATTTTTCTGACAATTTTTTTTCAGTTAAATTTTGATTTTCGGTTGTTTTTTTGCCCCATTTTAGGTGTTTCTTTTTTTCTTAATTCAAAAATTTGAATTTCCAACCGATTTTGATGATTTTGGGCTCATTTTTACGCAACATTTTCCACTTTTCATTTCAGATTCTCGCCCCCACCCCCTCCGAAAAATGTCCGAATTCAACAAGGAAGTCTACAAATTTTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>308 155 102 99 62 41 35 34 29 25 21 18 9 9 8 8 8 8 8 7 6</canonical_bands>
                <polymorphic_bands>308 155 102 99 62 42 41 35 29 25 21 18 9 9 8 8 8 8 7 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>308 102 99 62 54 41 36 34 29 25 25 21 18 16 16 15 10 10 9 9 8 8 8 8 8 8 7 6</canonical_bands>
                <polymorphic_bands>308 102 99 62 54 42 41 36 29 25 25 21 18 16 16 15 10 10 9 9 8 8 8 8 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATTTTTCAGGATGTGTAGATTC</pcr_primer_p1>
		<pcr_primer_p2>TTCTGGAATTCTTGAAAATCTTA</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>GATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAAAAAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAYTTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAAAAAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38928</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>276037</contig_pos>
        <strand>+</strand>
        <context>CCTAAATTTG[A/G]AAAAWAAAAR</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTG</left_flank>
        <right_flank>AAAAAAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATATTCATATTGTGTTTATAAGATCTCCACGTTAGGTCCGTATAGAATCGGATTGTATTTCTCTGACATCTACACTTATGATTCTTATACAAGTGTTCAGGTTTTGGATTCAGATGGAAAAGTTTTGGGAACATTCAGACAAGCTGTAAGCCCTTTTCCGTACTACTACAGTAGCTCGAATATTTTGACTGTTATTTCCGTATCCACCACTAATCAAGGCTATCGTGGTTGGGCAGCGAAGTTTTTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAAAAAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAAATTCTAGAAAATTAAGAAAATCAAAAAATCTCTAAATTTCTAAATTTCTAAAAATCTAAAACTTAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGGCCAATAAATTGAGAAGAACCGTGTCGCAAAATCGATTTATTTCGCTGATTTTTCTCGATTTTTCTGACAATTTTTTTTCAGTTAAATTTTGATTTTCGGTTGTTTTTTTGCCCCATTTTAGGTGTTTCTTTTTTTCTTAATTCAAAAATTTGAATTTCCAACCGATTTTGATGATTTTGGGCTCATTTTTACGCAACATTTTCCACTTTTCATTTCAGATTCTCGCCCCCACCCCCTCCGAAAAATGTCCGAATTCAACAAGGAAGTCTACAAATTTTGGGTGCAAAACCAATTGGCATTTTATGAGCAAAAATATCCGGATGCCGA</canonical>
            <polymorphic>TATATTCATATTGTGTTTATAAGATCTCCACGTTAGGTCCGTATAGAATCGGATTGTATTTCTCTGACATCTACACTTATGATTCTTATACAAGTGTTCAGGTTTTGGATTCAGATGGAAAAGTTTTGGGAACATTCAGACAAGCTGTAAGCCCTTTTCCGTACTACTACAGTAGCTCGAATATTTTGACTGTTATTTCCGTATCCACCACTAATCAAGGCTATCGTGGTTGGGCAGCGAAGTTTTTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGRAAAAAAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAAATTCTAGAAAATTAAGAAAATCAAAAAATCTCTAAATTTCTAAATTTCTAAAAATCTAAAACTTAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGGCCAATAAATTGAGAAGAACCGTGTCGCAAAATCGATTTATTTCGCTGATTTTTCTCGATTTTTCTGACAATTTTTTTTCAGTTAAATTTTGATTTTCGGTTGTTTTTTTGCCCCATTTTAGGTGTTTCTTTTTTTCTTAATTCAAAAATTTGAATTTCCAACCGATTTTGATGATTTTGGGCTCATTTTTACGCAACATTTTCCACTTTTCATTTCAGATTCTCGCCCCCACCCCCTCCGAAAAATGTCCGAATTCAACAAGGAAGTCTACAAATTTTGGGTGCAAAACCAATTGGCATTTTATGAGCAAAAATATCCGGATGCCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTGTAGATTCGGAGGTTCT</pcr_primer_p1>
		<pcr_primer_p2>GACACGGTTCTTCTCAATTTAT</pcr_primer_p2>
		<pcr_amplicon_size>370</pcr_amplicon_size>
		<canonical_amplicon>ATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAAAAAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAAATTCTAGAAAATTAAGAAAATCAAAAAATCTCTAAATTTCTAAATTTCTAAAAATCTAAAACTTAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGGCCAATAAATTGAGAAGAACCGTGTC</canonical_amplicon>
		<polymorphic_amplicon>ATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGRAAAAAAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAAATTCTAGAAAATTAAGAAAATCAAAAAATCTCTAAATTTCTAAATTTCTAAAAATCTAAAACTTAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGGCCAATAAATTGAGAAGAACCGTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38929</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>276042</contig_pos>
        <strand>+</strand>
        <context>ATTTGRAAAA[A/T]AAAARCTTCC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAAA</left_flank>
        <right_flank>AAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATATTGTGTTTATAAGATCTCCACGTTAGGTCCGTATAGAATCGGATTGTATTTCTCTGACATCTACACTTATGATTCTTATACAAGTGTTCAGGTTTTGGATTCAGATGGAAAAGTTTTGGGAACATTCAGACAAGCTGTAAGCCCTTTTCCGTACTACTACAGTAGCTCGAATATTTTGACTGTTATTTCCGTATCCACCACTAATCAAGGCTATCGTGGTTGGGCAGCGAAGTTTTTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAAAAAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAAATTCTAGAAAATTAAGAAAATCAAAAAATCTCTAAATTTCTAAATTTCTAAAAATCTAAAACTTAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGGCCAATAAATTGAGAAGAACCGTGTCGCAAAATCGATTTATTTCGCTGATTTTTCTCGATTTTTCTGACAATTTTTTTTCAGTTAAATTTTGATTTTCGGTTGTTTTTTTGCCCCATTTTAGGTGTTTCTTTTTTTCTTAATTCAAAAATTTGAATTTCCAACCGATTTTGATGATTTTGGGCTCATTTTTACGCAACATTTTCCACTTTTCATTTCAGATTCTCGCCCCCACCCCCTCCGAAAAATGTCCGAATTCAACAAGGAAGTCTACAAATTTTGGGTGCAAAACCAATTGGCATTTTATGAGCAAAAATATCCGGATGCCGATCAAA</canonical>
            <polymorphic>TCATATTGTGTTTATAAGATCTCCACGTTAGGTCCGTATAGAATCGGATTGTATTTCTCTGACATCTACACTTATGATTCTTATACAAGTGTTCAGGTTTTGGATTCAGATGGAAAAGTTTTGGGAACATTCAGACAAGCTGTAAGCCCTTTTCCGTACTACTACAGTAGCTCGAATATTTTGACTGTTATTTCCGTATCCACCACTAATCAAGGCTATCGTGGTTGGGCAGCGAAGTTTTTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAAAWAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAAATTCTAGAAAATTAAGAAAATCAAAAAATCTCTAAATTTCTAAATTTCTAAAAATCTAAAACTTAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGGCCAATAAATTGAGAAGAACCGTGTCGCAAAATCGATTTATTTCGCTGATTTTTCTCGATTTTTCTGACAATTTTTTTTCAGTTAAATTTTGATTTTCGGTTGTTTTTTTGCCCCATTTTAGGTGTTTCTTTTTTTCTTAATTCAAAAATTTGAATTTCCAACCGATTTTGATGATTTTGGGCTCATTTTTACGCAACATTTTCCACTTTTCATTTCAGATTCTCGCCCCCACCCCCTCCGAAAAATGTCCGAATTCAACAAGGAAGTCTACAAATTTTGGGTGCAAAACCAATTGGCATTTTATGAGCAAAAATATCCGGATGCCGATCAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTGTAGATTCGGAGGTTCT</pcr_primer_p1>
		<pcr_primer_p2>GACACGGTTCTTCTCAATTTAT</pcr_primer_p2>
		<pcr_amplicon_size>370</pcr_amplicon_size>
		<canonical_amplicon>ATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAAAAAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAAATTCTAGAAAATTAAGAAAATCAAAAAATCTCTAAATTTCTAAATTTCTAAAAATCTAAAACTTAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGGCCAATAAATTGAGAAGAACCGTGTC</canonical_amplicon>
		<polymorphic_amplicon>ATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAAAWAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAAATTCTAGAAAATTAAGAAAATCAAAAAATCTCTAAATTTCTAAATTTCTAAAAATCTAAAACTTAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGGCCAATAAATTGAGAAGAACCGTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38930</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>276047</contig_pos>
        <strand>+</strand>
        <context>RAAAAWAAAA[A/G]CTTCCGGTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAAAAAAAA</left_flank>
        <right_flank>CTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTGTTTATAAGATCTCCACGTTAGGTCCGTATAGAATCGGATTGTATTTCTCTGACATCTACACTTATGATTCTTATACAAGTGTTCAGGTTTTGGATTCAGATGGAAAAGTTTTGGGAACATTCAGACAAGCTGTAAGCCCTTTTCCGTACTACTACAGTAGCTCGAATATTTTGACTGTTATTTCCGTATCCACCACTAATCAAGGCTATCGTGGTTGGGCAGCGAAGTTTTTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAAAAAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAAATTCTAGAAAATTAAGAAAATCAAAAAATCTCTAAATTTCTAAATTTCTAAAAATCTAAAACTTAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGGCCAATAAATTGAGAAGAACCGTGTCGCAAAATCGATTTATTTCGCTGATTTTTCTCGATTTTTCTGACAATTTTTTTTCAGTTAAATTTTGATTTTCGGTTGTTTTTTTGCCCCATTTTAGGTGTTTCTTTTTTTCTTAATTCAAAAATTTGAATTTCCAACCGATTTTGATGATTTTGGGCTCATTTTTACGCAACATTTTCCACTTTTCATTTCAGATTCTCGCCCCCACCCCCTCCGAAAAATGTCCGAATTCAACAAGGAAGTCTACAAATTTTGGGTGCAAAACCAATTGGCATTTTATGAGCAAAAATATCCGGATGCCGATCAAAAAAGT</canonical>
            <polymorphic>TTGTGTTTATAAGATCTCCACGTTAGGTCCGTATAGAATCGGATTGTATTTCTCTGACATCTACACTTATGATTCTTATACAAGTGTTCAGGTTTTGGATTCAGATGGAAAAGTTTTGGGAACATTCAGACAAGCTGTAAGCCCTTTTCCGTACTACTACAGTAGCTCGAATATTTTGACTGTTATTTCCGTATCCACCACTAATCAAGGCTATCGTGGTTGGGCAGCGAAGTTTTTATCGTTTTGATGGGAATTTGGAATTCAGTTTTTGGAATAAAGATATTTTTATTTGTAGAATATTGTTTTGGATTTTTCAGGATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAAAAAAAARCTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAAATTCTAGAAAATTAAGAAAATCAAAAAATCTCTAAATTTCTAAATTTCTAAAAATCTAAAACTTAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGGCCAATAAATTGAGAAGAACCGTGTCGCAAAATCGATTTATTTCGCTGATTTTTCTCGATTTTTCTGACAATTTTTTTTCAGTTAAATTTTGATTTTCGGTTGTTTTTTTGCCCCATTTTAGGTGTTTCTTTTTTTCTTAATTCAAAAATTTGAATTTCCAACCGATTTTGATGATTTTGGGCTCATTTTTACGCAACATTTTCCACTTTTCATTTCAGATTCTCGCCCCCACCCCCTCCGAAAAATGTCCGAATTCAACAAGGAAGTCTACAAATTTTGGGTGCAAAACCAATTGGCATTTTATGAGCAAAAATATCCGGATGCCGATCAAAAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTGTAGATTCGGAGGTTCT</pcr_primer_p1>
		<pcr_primer_p2>GACACGGTTCTTCTCAATTTAT</pcr_primer_p2>
		<pcr_amplicon_size>370</pcr_amplicon_size>
		<canonical_amplicon>ATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAAAAAAAAACTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAAATTCTAGAAAATTAAGAAAATCAAAAAATCTCTAAATTTCTAAATTTCTAAAAATCTAAAACTTAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGGCCAATAAATTGAGAAGAACCGTGTC</canonical_amplicon>
		<polymorphic_amplicon>ATGTGTAGATTCGGAGGTTCTGGAAGTTTTCAAAAAATCTGAAATTTGGGAAATTCTGATTTTCCAAAGTTTCGAAAAAAAATTCAGAAAATTCAAATATTTTTGAAAATTTAGAAATTCGGAAATTTTGAAAATCAGTGATTCCAACAACTTCAAAAATTCCTAAATTTGAAAAAAAAAARCTTCCGGTAATTAAGATTTTCAAGAATTCCAGAAAACTTAATTTTCAAAAATTCTAGAAAATTAAGAAAATCAAAAAATCTCTAAATTTCTAAATTTCTAAAAATCTAAAACTTAGTAGATCAAAAAAAATTGATCTACCAAAAAAAAATCCAAAAATGGCGGCCAATAAATTGAGAAGAACCGTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38931</snp_id>
        <super_contig>c013301077.Contig1</super_contig>
        <contig_pos>330308</contig_pos>
        <strand>+</strand>
        <context>GTCAAGGTTC[G/T]AGAAGGATCG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCATGAAGAAGTTTTGAAGATTAGAGAAAGCGAGGAGAAGTCAAGGTTC</left_flank>
        <right_flank>AGAAGGATCGTCAGGAGCGGGAGAAGATGAGACGAGAGAGTGACGATCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCCAAAATTTTTCAAAATTCTAATTGCAGACCTTTCTCAATTTTCAGAAGAGTCGCCAATGGATGTGGCACGTAAGATGCGCAAGCTGCTCACAAATAAAAACGGTGAAATCGATGAATCTCGAGAAGCAGCACGGCAAGCAGAAAAGGAGAGAGATCGAGCGAAGAAGGATCTGGAAAAAGAAGAAAAGCGGCGAAAAGATGATCGAGAAGCAGAAAGAAAACGATCCAGTGTCTATTCGCAACGAGAGCATGATCTGAAGAAGCTAGAAGATGATCTACGGAAGGCGTCAGAGAAGATTCGAAATCTGGAAGAGCAGAAGGATTCACAAGAGAAGCTAACGACATCTGTGCAGAATTCATTAAACGAGGCACATCGACAACACAAGAGTTTTATCGAAGAGTTGATGATTCGTCACAGAGAGGAGCTTAAAGAACGTGAAGATACTCATGAAGAAGTTTTGAAGATTAGAGAAAGCGAGGAGAAGTCAAGGTTCGAGAAGGATCGTCAGGAGCGGGAGAAGATGAGACGAGAGAGTGACGATCTTCGAGAGACGCAGAGAACACTGAAAGGCGATTTGGCAGCGATGAAGACAGATCTAGATGATAAGACATTAAGATTGGACATGCTGGAAACAGACAGAGATGAGCTTCGCAAGAAACTTGAATCGGAAAGAGAACTAGCCGATCAGAGAGACTTAGAGATATCCGAGTGTCGAACGAAGCTTGATGAAATGCAAGAGAAAGAGGCGGAGCTAAGAAGAGAGCTCGCTGAAAGTCAAGCGACGATCACAGCGATGGAAGGAGAGGGCAAGCTAAGCGAGGAGCAGTTTTTGGAGAATAAAAATGAGATAAATACGTTGAATGAGCAACTGGAGCAGGTGAACATTGAGCTAGATGCGAAAAATGAGGAGATTCGAAATCTGCAAGGATCCATTCAAGAGAAGGAAGTGCATATTCAAAATGTCCGCACCTCAACCCAACAGTTGTCTGCCACT</canonical>
            <polymorphic>TTTTCCAAAATTTTTCAAAATTCTAATTGCAGACCTTTCTCAATTTTCAGAAGAGTCGCCAATGGATGTGGCACGTAAGATGCGCAAGCTGCTCACAAATAAAAACGGTGAAATCGATGAATCTCGAGAAGCAGCACGGCAAGCAGAAAAGGAGAGAGATCGAGCGAAGAAGGATCTGGAAAAAGAAGAAAAGCGGCGAAAAGATGATCGAGAAGCAGAAAGAAAACGATCCAGTGTCTATTCGCAACGAGAGCATGATCTGAAGAAGCTAGAAGATGATCTACGGAAGGCGTCAGAGAAGATTCGAAATCTGGAAGAGCAGAAGGATTCACAAGAGAAGCTAACGACATCTGTGCAGAATTCATTAAACGAGGCACATCGACAACACAAGAGTTTTATCGAAGAGTTGATGATTCGTCACAGAGAGGAGCTTAAAGAACGTGAAGATACTCATGAAGAAGTTTTGAAGATTAGAGAAAGCGAGGAGAAGTCAAGGTTCKAGAAGGATCGTCAGGAGCGGGAGAAGATGAGACGAGAGAGTGACGATCTTCGAGAGACGCAGAGAACACTGAAAGGCGATTTGGCAGCGATGAAGACAGATCTAGATGATAAGACATTAAGATTGGACATGCTGGAAACAGACAGAGATGAGCTTCGCAAGAAACTTGAATCGGAAAGAGAACTAGCCGATCAGAGAGACTTAGAGATATCCGAGTGTCGAACGAAGCTTGATGAAATGCAAGAGAAAGAGGCGGAGCTAAGAAGAGAGCTCGCTGAAAGTCAAGCGACGATCACAGCGATGGAAGGAGAGGGCAAGCTAAGCGAGGAGCAGTTTTTGGAGAATAAAAATGAGATAAATACGTTGAATGAGCAACTGGAGCAGGTGAACATTGAGCTAGATGCGAAAAATGAGGAGATTCGAAATCTGCAAGGATCCATTCAAGAGAAGGAAGTGCATATTCAAAATGTCCGCACCTCAACCCAACAGTTGTCTGCCACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>201 168 115 99 96 80 75 52 48 36 20 10</canonical_bands>
                <polymorphic_bands>201 168 151 115 96 80 75 48 36 20 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACACAAGAGTTTTATCGAAGAG</pcr_primer_p1>
		<pcr_primer_p2>GCATGTCCAATCTTAATGTCTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACACAAGAGTTTTATCGAAGAGTTGATGATTCGTCACAGAGAGGAGCTTAAAGAACGTGAAGATACTCATGAAGAAGTTTTGAAGATTAGAGAAAGCGAGGAGAAGTCAAGGTTCGAGAAGGATCGTCAGGAGCGGGAGAAGATGAGACGAGAGAGTGACGATCTTCGAGAGACGCAGAGAACACTGAAAGGCGATTTGGCAGCGATGAAGACAGATCTAGATGATAAGACATTAAGATTGGACATGC</canonical_amplicon>
		<polymorphic_amplicon>AACACAAGAGTTTTATCGAAGAGTTGATGATTCGTCACAGAGAGGAGCTTAAAGAACGTGAAGATACTCATGAAGAAGTTTTGAAGATTAGAGAAAGCGAGGAGAAGTCAAGGTTCKAGAAGGATCGTCAGGAGCGGGAGAAGATGAGACGAGAGAGTGACGATCTTCGAGAGACGCAGAGAACACTGAAAGGCGATTTGGCAGCGATGAAGACAGATCTAGATGATAAGACATTAAGATTGGACATGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38932</snp_id>
        <super_contig>c013301088.Contig1</super_contig>
        <contig_pos>12748</contig_pos>
        <strand>+</strand>
        <context>TTCGAAGGGC[A/T]CCTATCAATC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCAACGCCAGCTCCAGCTGCGCCGTCTCCATCTTCGGAAATTCGAAGGGC</left_flank>
        <right_flank>CCTATCAATCCATTGATCTCTTCACTCGAAGGCTATTCACGTACGTTCTT</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCTTGAAATGATATGAAGGGATTTAGGAAGAGAGTGGCGCGTATGGATCCCGCTTTCACTCATTCTCCTGGACGAGAAAAGCAACTTTCGTTTTGCCTCTTCCCGGTTTTTCACATTCATTTAGGTCACCTTATCTCTCGAATTAGTCGTCTATTTCATTAGCCGATAGGTGATTATTCGGTGTCCCCCCATTGGTCCATGCTGCTTAATAAAACGAATTTCATATTGGCACTAGCCATTCTTGGCAGCAGCTATGCCAAGGAAGAAGAGAAAACACCCGGAGAAGAGAGTAAGTTTTATAATCCACATTTCGAATTTCATCCCCACCATTTGCCAATCAAGCACATCTGCTCATCCAATTTCAGTGATTGATCGTTTAGCAGTGAACATGGCAGGTGCATTCGTCAAGAGTATGTTCCCGGAGATGGATCGTAAACCGACCGAAGCCCCAACGCCAGCTCCAGCTGCGCCGTCTCCATCTTCGGAAATTCGAAGGGCTCCTATCAATCCATTGATCTCTTCACTCGAAGGCTATTCACGTACGTTCTTCTCCACATTTTCAAGGACGCACTTGTTCTTCAGAACGGCCCGAAAAAAACTAAGAAGATGAATGAGACCACCCCTAAGAAAACCACCTAGTCGGGCAACTAGTCGGGGGAGTGAATGATTCAAAAAATAGATAGTAGTAATTGATGGTGTAATTTTGAACAAAAAGTCTATAACGAATTGTATTCTTTTAGGAATTTTTGGGGGTCTGAAAAATGTGAATCAAAAAAAATTCCAGCTCAATTCGCTGCATCTGAATACAATGCCATGCCACAACTTTCCCAAGCATCTGATACTCCAAGAAACCCATTCAGCTATCAAGCCAACCAACCATCAACCTACTCGGTTATGCCAGAGATGTCTCAAAATAAAATCGGTCAATCCACGGCTTCAGGCATGGAGAGTTTGGGAGCTCTTGCATTAAGCGGAATGAGAAATCCAGATATCTCTGGA</canonical>
            <polymorphic>GTCTTGAAATGATATGAAGGGATTTAGGAAGAGAGTGGCGCGTATGGATCCCGCTTTCACTCATTCTCCTGGACGAGAAAAGCAACTTTCGTTTTGCCTCTTCCCGGTTTTTCACATTCATTTAGGTCACCTTATCTCTCGAATTAGTCGTCTATTTCATTAGCCGATAGGTGATTATTCGGTGTCCCCCCATTGGTCCATGCTGCTTAATAAAACGAATTTCATATTGGCACTAGCCATTCTTGGCAGCAGCTATGCCAAGGAAGAAGAGAAAACACCCGGAGAAGAGAGTAAGTTTTATAATCCACATTTCGAATTTCATCCCCACCATTTGCCAATCAAGCACATCTGCTCATCCAATTTCAGTGATTGATCGTTTAGCAGTGAACATGGCAGGTGCATTCGTCAAGAGTATGTTCCCGGAGATGGATCGTAAACCGACCGAAGCCCCAACGCCAGCTCCAGCTGCGCCGTCTCCATCTTCGGAAATTCGAAGGGCWCCTATCAATCCATTGATCTCTTCACTCGAAGGCTATTCACGTACGTTCTTCTCCACATTTTCAAGGACGCACTTGTTCTTCAGAACGGCCCGAAAAAAACTAAGAAGATGAATGAGACCACCCCTAAGAAAACCACCTAGTCGGGCAACTAGTCGGGGGAGTGAATGATTCAAAAAATAGATAGTAGTAATTGATGGTGTAATTTTGAACAAAAAGTCTATAACGAATTGTATTCTTTTAGGAATTTTTGGGGGTCTGAAAAATGTGAATCAAAAAAAATTCCAGCTCAATTCGCTGCATCTGAATACAATGCCATGCCACAACTTTCCCAAGCATCTGATACTCCAAGAAACCCATTCAGCTATCAAGCCAACCAACCATCAACCTACTCGGTTATGCCAGAGATGTCTCAAAATAAAATCGGTCAATCCACGGCTTCAGGCATGGAGAGTTTGGGAGCTCTTGCATTAAGCGGAATGAGAAATCCAGATATCTCTGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>500 461 39</canonical_bands>
                <polymorphic_bands>961 39</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>500 461 39</canonical_bands>
                <polymorphic_bands>961 39</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>197 195 163 76 73 66 56 41 34 33 24 16 12 8 6</canonical_bands>
                <polymorphic_bands>197 195 163 76 73 67 66 56 41 24 16 12 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATCGTTTAGCAGTGAACAT</pcr_primer_p1>
		<pcr_primer_p2>TGGTCTCATTCATCTTCTTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGATCGTTTAGCAGTGAACATGGCAGGTGCATTCGTCAAGAGTATGTTCCCGGAGATGGATCGTAAACCGACCGAAGCCCCAACGCCAGCTCCAGCTGCGCCGTCTCCATCTTCGGAAATTCGAAGGGCTCCTATCAATCCATTGATCTCTTCACTCGAAGGCTATTCACGTACGTTCTTCTCCACATTTTCAAGGACGCACTTGTTCTTCAGAACGGCCCGAAAAAAACTAAGAAGATGAATGAGACCA</canonical_amplicon>
		<polymorphic_amplicon>TGATCGTTTAGCAGTGAACATGGCAGGTGCATTCGTCAAGAGTATGTTCCCGGAGATGGATCGTAAACCGACCGAAGCCCCAACGCCAGCTCCAGCTGCGCCGTCTCCATCTTCGGAAATTCGAAGGGCWCCTATCAATCCATTGATCTCTTCACTCGAAGGCTATTCACGTACGTTCTTCTCCACATTTTCAAGGACGCACTTGTTCTTCAGAACGGCCCGAAAAAAACTAAGAAGATGAATGAGACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38933</snp_id>
        <super_contig>c013301088.Contig1</super_contig>
        <contig_pos>96571</contig_pos>
        <strand>+</strand>
        <context>CCATAGAACG[A/T]AAAAAAAWAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCGAGCCTCGTTTTCACTAGCTTTTCGGAACAAAGCATCCCCATAGAACG</left_flank>
        <right_flank>AAAAAAAAAGTTGAACTCTAACCCCTATATTTTGTTTTGACGGCTTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTTTTCTCTTGGTGATTGACCAGACATCGGGGTGCTCAGTAGCTGGGGGGGGGGGGGGGGGAAGAATAACAATTTCTCCGCATGGGTTAACATTGTTTTTTGAGTATTTCGTACTGTTTGATAAGAATTGACGTAGCATCGCTTTTTTCGTTGAAATTTGGAACTATAGAGTATTCCAGTTCATTCTATTCGCATGTTCTTTTCTTTTAATTAATCAAAGAATTGTAATCTCAACAAACTAACAAAAAAGAGAACTTTACCCCCTGCATTCCACCGATCAGAATGCAATTTCTGAGTAGGGCTGAATAATGGTCAACGGTGTAGTTTTGGAAATAAAAAATGGTGGAGGAGGGGAGAAATTTTTGATAAGAAAAGTACTTACCCGCCTTGTCCACTGTCTACATTTTCAGTGCTTGTTTCGTTTTGACAGTTCTGAAATTTGTATTTTCGAGCCTCGTTTTCACTAGCTTTTCGGAACAAAGCATCCCCATAGAACGAAAAAAAAAAGTTGAACTCTAACCCCTATATTTTGTTTTGACGGCTTTTTCCCAATAGTTTTCCTTCAGTTTTGTTGCCTCTATTTCTTTTCTATCCTCGCCTCATAGAACTCCCTAAATGCGGTTTGTGAGAAATGAGTGTTTGTATCGGACTGCGCGGTGTCCGCCAGAGTCCGTTCGTCCGGCCTCCGCCAATCCTCTTCCCTACCCCGTTTTTTGTCTCCATTTGCGTAGTTTTCCTGCCTGCAGAAGTTTTTTATTCCCTCCGCTTCCATCTTTTCACGACCGGGTACGGGCAAATGAAAATGCGCTTGATTCCTCCCTCTTATTTCCTGTTGACTAAGATGGAAGAAGAAAAAACTAAGAAATTTTTTTAGTCAATCTTCAAAAGTGGTTTGATTGACATCAACGCCCTCCCATAGCCCAGAGTCATTTCACAACTAACAGAGTCTTTTGGACCCTCCATGTTGGGCTTTTCACATCCCGGATGGATAGCTTTTA</canonical>
            <polymorphic>CTGTTTTCTCTTGGTGATTGACCAGACATCGGGGTGCTCAGTAGCTGGGGGGGGGGGGGGGGGAAGAATAACAATTTCTCCGCATGGGTTAACATTGTTTTTTGAGTATTTCGTACTGTTTGATAAGAATTGACGTAGCATCGCTTTTTTCGTTGAAATTTGGAACTATAGAGTATTCCAGTTCATTCTATTCGCATGTTCTTTTCTTTTAATTAATCAAAGAATTGTAATCTCAACAAACTAACAAAAAAGAGAACTTTACCCCCTGCATTCCACCGATCAGAATGCAATTTCTGAGTAGGGCTGAATAATGGTCAACGGTGTAGTTTTGGAAATAAAAAATGGTGGAGGAGGGGAGAAATTTTTGATAAGAAAAGTACTTACCCGCCTTGTCCACTGTCTACATTTTCAGTGCTTGTTTCGTTTTGACAGTTCTGAAATTTGTATTTTCGAGCCTCGTTTTCACTAGCTTTTCGGAACAAAGCATCCCCATAGAACGWAAAAAAAAAGTTGAACTCTAACCCCTATATTTTGTTTTGACGGCTTTTTCCCAATAGTTTTCCTTCAGTTTTGTTGCCTCTATTTCTTTTCTATCCTCGCCTCATAGAACTCCCTAAATGCGGTTTGTGAGAAATGAGTGTTTGTATCGGACTGCGCGGTGTCCGCCAGAGTCCGTTCGTCCGGCCTCCGCCAATCCTCTTCCCTACCCCGTTTTTTGTCTCCATTTGCGTAGTTTTCCTGCCTGCAGAAGTTTTTTATTCCCTCCGCTTCCATCTTTTCACGACCGGGTACGGGCAAATGAAAATGCGCTTGATTCCTCCCTCTTATTTCCTGTTGACTAAGATGGAAGAAGAAAAAACTAAGAAATTTTTTTAGTCAATCTTCAAAAGTGGTTTGATTGACATCAACGCCCTCCCATAGCCCAGAGTCATTTCACAACTAACAGAGTCTTTTGGACCCTCCATGTTGGGCTTTTCACATCCCGGATGGATAGCTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCTACATTTTCAGTGCTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>GATACAAACACTCATTTCTCACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCTACATTTTCAGTGCTTGTTTCGTTTTGACAGTTCTGAAATTTGTATTTTCGAGCCTCGTTTTCACTAGCTTTTCGGAACAAAGCATCCCCATAGAACGAAAAAAAAAAGTTGAACTCTAACCCCTATATTTTGTTTTGACGGCTTTTTCCCAATAGTTTTCCTTCAGTTTTGTTGCCTCTATTTCTTTTCTATCCTCGCCTCATAGAACTCCCTAAATGCGGTTTGTGAGAAATGAGTGTTTGTATC</canonical_amplicon>
		<polymorphic_amplicon>GTCTACATTTTCAGTGCTTGTTTCGTTTTGACAGTTCTGAAATTTGTATTTTCGAGCCTCGTTTTCACTAGCTTTTCGGAACAAAGCATCCCCATAGAACGWAAAAAAAAAGTTGAACTCTAACCCCTATATTTTGTTTTGACGGCTTTTTCCCAATAGTTTTCCTTCAGTTTTGTTGCCTCTATTTCTTTTCTATCCTCGCCTCATAGAACTCCCTAAATGCGGTTTGTGAGAAATGAGTGTTTGTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38934</snp_id>
        <super_contig>c013301088.Contig1</super_contig>
        <contig_pos>96915</contig_pos>
        <strand>+</strand>
        <context>GTTGACTAAG[A/G]TGGAAGAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGCAAATGAAAATGCGCTTGATTCCTCCCTCTTATTTCCTGTTGACTAAG</left_flank>
        <right_flank>TGGAAGAAGAAAAAACTAAGAAATTTTTTTAGTCAATCTTCAAAAGTGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGGAGGAGGGGAGAAATTTTTGATAAGAAAAGTACTTACCCGCCTTGTCCACTGTCTACATTTTCAGTGCTTGTTTCGTTTTGACAGTTCTGAAATTTGTATTTTCGAGCCTCGTTTTCACTAGCTTTTCGGAACAAAGCATCCCCATAGAACGAAAAAAAAAAGTTGAACTCTAACCCCTATATTTTGTTTTGACGGCTTTTTCCCAATAGTTTTCCTTCAGTTTTGTTGCCTCTATTTCTTTTCTATCCTCGCCTCATAGAACTCCCTAAATGCGGTTTGTGAGAAATGAGTGTTTGTATCGGACTGCGCGGTGTCCGCCAGAGTCCGTTCGTCCGGCCTCCGCCAATCCTCTTCCCTACCCCGTTTTTTGTCTCCATTTGCGTAGTTTTCCTGCCTGCAGAAGTTTTTTATTCCCTCCGCTTCCATCTTTTCACGACCGGGTACGGGCAAATGAAAATGCGCTTGATTCCTCCCTCTTATTTCCTGTTGACTAAGATGGAAGAAGAAAAAACTAAGAAATTTTTTTAGTCAATCTTCAAAAGTGGTTTGATTGACATCAACGCCCTCCCATAGCCCAGAGTCATTTCACAACTAACAGAGTCTTTTGGACCCTCCATGTTGGGCTTTTCACATCCCGGATGGATAGCTTTTACATACTTGGAAAAGGCGAATACATGCACTATTTTGCTTTTGGTCCGAAAAAACAACCCATAGAAGTAAAACATTTCTTGCTCTCACTCGTTTTCTATTCTTCTATTCTATCGTCATGAATTATGTTCCGGTTAGAAGTGCAGGAGACCTTCAAACTTCAATTTCACTAGTATTTTTCACATATGAGCAACTTCCATTACCATCACTTTATGAGTTTTTTTTGAAGTGACAACCAATGGTCAAACTAGTCAGCCTTCAATAGGTTTGATCTACGGTAGCGACACTTGCGTTCGTTTTGGACAACCCTGTTGAGTGTTGACACACTCTTCAGTTTACTGTGTCCCT</canonical>
            <polymorphic>GTGGAGGAGGGGAGAAATTTTTGATAAGAAAAGTACTTACCCGCCTTGTCCACTGTCTACATTTTCAGTGCTTGTTTCGTTTTGACAGTTCTGAAATTTGTATTTTCGAGCCTCGTTTTCACTAGCTTTTCGGAACAAAGCATCCCCATAGAACGAAAAAAAAAAGTTGAACTCTAACCCCTATATTTTGTTTTGACGGCTTTTTCCCAATAGTTTTCCTTCAGTTTTGTTGCCTCTATTTCTTTTCTATCCTCGCCTCATAGAACTCCCTAAATGCGGTTTGTGAGAAATGAGTGTTTGTATCGGACTGCGCGGTGTCCGCCAGAGTCCGTTCGTCCGGCCTCCGCCAATCCTCTTCCCTACCCCGTTTTTTGTCTCCATTTGCGTAGTTTTCCTGCCTGCAGAAGTTTTTTATTCCCTCCGCTTCCATCTTTTCACGACCGGGTACGGGCAAATGAAAATGCGCTTGATTCCTCCCTCTTATTTCCTGTTGACTAAGRTGGAAGAAGAAAAAACTAAGAAATTTTTTTAGTCAATCTTCAAAAGTGGTTTGATTGACATCAACGCCCTCCCATAGCCCAGAGTCATTTCACAACTAACAGAGTCTTTTGGACCCTCCATGTTGGGCTTTTCACATCCCGGATGGATAGCTTTTACATACTTGGAAAAGGCGAATACATGCACTATTTTGCTTTTGGTCCGAAAAAACAACCCATAGAAGTAAAACATTTCTTGCTCTCACTCGTTTTCTATTCTTCTATTCTATCGTCATGAATTATGTTCCGGTTAGAAGTGCAGGAGACCTTCAAACTTCAATTTCACTAGTATTTTTCACATATGAGCAACTTCCATTACCATCACTTTATGAGTTTTTTTTGAAGTGACAACCAATGGTCAAACTAGTCAGCCTTCAATAGGTTTGATCTACGGTAGCGACACTTGCGTTCGTTTTGGACAACCCTGTTGAGTGTTGACACACTCTTCAGTTTACTGTGTCCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGTCTCCATTTGCGTAGT</pcr_primer_p1>
		<pcr_primer_p2>GTCCAAAAGACTCTGTTAGTTGT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTTGTCTCCATTTGCGTAGTTTTCCTGCCTGCAGAAGTTTTTTATTCCCTCCGCTTCCATCTTTTCACGACCGGGTACGGGCAAATGAAAATGCGCTTGATTCCTCCCTCTTATTTCCTGTTGACTAAGATGGAAGAAGAAAAAACTAAGAAATTTTTTTAGTCAATCTTCAAAAGTGGTTTGATTGACATCAACGCCCTCCCATAGCCCAGAGTCATTTCACAACTAACAGAGTCTTTTGGAC</canonical_amplicon>
		<polymorphic_amplicon>TTTGTCTCCATTTGCGTAGTTTTCCTGCCTGCAGAAGTTTTTTATTCCCTCCGCTTCCATCTTTTCACGACCGGGTACGGGCAAATGAAAATGCGCTTGATTCCTCCCTCTTATTTCCTGTTGACTAAGRTGGAAGAAGAAAAAACTAAGAAATTTTTTTAGTCAATCTTCAAAAGTGGTTTGATTGACATCAACGCCCTCCCATAGCCCAGAGTCATTTCACAACTAACAGAGTCTTTTGGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38935</snp_id>
        <super_contig>c013301126.Contig1</super_contig>
        <contig_pos>23048</contig_pos>
        <strand></strand>
        <context>ATCAATAACG[G/A]GTAATACTGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AGATGTAACCGGTAGAAAAGGAGAAATAGGGAGCAAATATATCAATAACG</left_flank>
        <right_flank>GTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAGTTTTTCGGAATATTATTACCGTAAAACCTCTAAAAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGTGAAAGATATCAAAAAGTGGCTAATTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATTAAAAATTTGAGTTTTTCAGATTCACTCTTCGCCAAGTTTGTAGAGATTTTTGAAAATTGCCAGATTTAATTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAGATGTAACCGGTAGAAAAGGAGAAATAGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACAGGGGAACAATTGAAGAAAAATAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGTAAGTAGGCGGAGCCATTTAAAAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATGGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAGAACATAACATTTGAAAAGATGAATGTAGAATTCTGGAGACTTAGATCTACATGACTTTAAGAGTTGTTTGGAGCGGAG</canonical>
            <polymorphic>TGAGTTTTTCGGAATATTATTACCGTAAAACCTCTAAAAGAACGACACCCGGATCGTCCACTTTGAGCCTATATATCTCATTTTCTGTGAAAGATATCAAAAAGTGGCTAATTAGTAAAATGTTGCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATTAAAAATTTGAGTTTTTCAGATTCACTCTTCGCCAAGTTTGTAGAGATTTTTGAAAATTGCCAGATTTAATTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAGATGTAACCGGTAGAAAAGGAGAAATAGGGAGCAAATATATCAATAACGRGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACAGGGGAACAATTGAAGAAAAATAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGTAAGTAGGCGGAGCCATTTAAAAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATGGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAGAACATAACATTTGAAAAGATGAATGTAGAATTCTGGAGACTTAGATCTACATGACTTTAAGAGTTGTTTGGAGCGGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAATTTGTTTATTGATCAGGTG</pcr_primer_p1>
		<pcr_primer_p2>CAAGTTACCCGATTTCTCCTA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>TTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAGATGTAACCGGTAGAAAAGGAGAAATAGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTG</canonical_amplicon>
		<polymorphic_amplicon>TTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAGATGTAACCGGTAGAAAAGGAGAAATAGGGAGCAAATATATCAATAACGRGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38936</snp_id>
        <super_contig>c013301126.Contig1</super_contig>
        <contig_pos>23172</contig_pos>
        <strand></strand>
        <context>gggctgaaca[A/T]taattaagtt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCACAGGGGAACAATTGAAGAAAAATAGTCAGAGGAGTAGGGCTGAACA</left_flank>
        <right_flank>TAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATTAAAAATTTGAGTTTTTCAGATTCACTCTTCGCCAAGTTTGTAGAGATTTTTGAAAATTGCCAGATTTAATTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAGATGTAACCGGTAGAAAAGGAGAAATAGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACAGGGGAACAATTGAAGAAAAATAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGTAAGTAGGCGGAGCCATTTAAAAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATGGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAGAACATAACATTTGAAAAGATGAATGTAGAATTCTGGAGACTTAGATCTACATGACTTTAAGAGTTGTTTGGAGCGGAGAAGAGCTACAGATGTGATTTTGTTGATGTGAGCAGAGAATTTGAGAGAGGAATCAGTAATGAGACCCAAGTCCAAATTGATTGAGCTTAACAGGAAGCTTAGGAATCGATGAATCATATGAAAG</canonical>
            <polymorphic>GCTGATATCCTGATAAACATTTTACTAGTTAACCACTTTTTGATATCTTTCAAAAGAAGTGAGATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATTAAAAATTTGAGTTTTTCAGATTCACTCTTCGCCAAGTTTGTAGAGATTTTTGAAAATTGCCAGATTTAATTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAGATGTAACCGGTAGAAAAGGAGAAATAGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACAGGGGAACAATTGAAGAAAAATAGTCAGAGGAGTAGGGCTGAACAWTAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGTAAGTAGGCGGAGCCATTTAAAAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATGGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAGAACATAACATTTGAAAAGATGAATGTAGAATTCTGGAGACTTAGATCTACATGACTTTAAGAGTTGTTTGGAGCGGAGAAGAGCTACAGATGTGATTTTGTTGATGTGAGCAGAGAATTTGAGAGAGGAATCAGTAATGAGACCCAAGTCCAAATTGATTGAGCTTAACAGGAAGCTTAGGAATCGATGAATCATATGAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGGAGAAATCGGGTAACTTG</pcr_primer_p1>
		<pcr_primer_p2>CCTAAGCTTCCTGTTAAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>565</pcr_amplicon_size>
		<canonical_amplicon>TAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACAGGGGAACAATTGAAGAAAAATAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGTAAGTAGGCGGAGCCATTTAAAAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATGGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAGAACATAACATTTGAAAAGATGAATGTAGAATTCTGGAGACTTAGATCTACATGACTTTAAGAGTTGTTTGGAGCGGAGAAGAGCTACAGATGTGATTTTGTTGATGTGAGCAGAGAATTTGAGAGAGGAATCAGTAATGAGACCCAAGTCCAAATTGATTGAGCTTAACAGGAAGCTTAGG</canonical_amplicon>
		<polymorphic_amplicon>TAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACAGGGGAACAATTGAAGAAAAATAGTCAGAGGAGTAGGGCTGAACAWTAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGTAAGTAGGCGGAGCCATTTAAAAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATGGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAGAACATAACATTTGAAAAGATGAATGTAGAATTCTGGAGACTTAGATCTACATGACTTTAAGAGTTGTTTGGAGCGGAGAAGAGCTACAGATGTGATTTTGTTGATGTGAGCAGAGAATTTGAGAGAGGAATCAGTAATGAGACCCAAGTCCAAATTGATTGAGCTTAACAGGAAGCTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38937</snp_id>
        <super_contig>c013301126.Contig1</super_contig>
        <contig_pos>23234</contig_pos>
        <strand></strand>
        <context>ttaggttagg[T/A]aagtaggcgg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGG</left_flank>
        <right_flank>AAGTAGGCGGAGCCATTTAAAAATTTATAGAGAAGAATTAGTTGAGCTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATTAAAAATTTGAGTTTTTCAGATTCACTCTTCGCCAAGTTTGTAGAGATTTTTGAAAATTGCCAGATTTAATTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAGATGTAACCGGTAGAAAAGGAGAAATAGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACAGGGGAACAATTGAAGAAAAATAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGTAAGTAGGCGGAGCCATTTAAAAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATGGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAGAACATAACATTTGAAAAGATGAATGTAGAATTCTGGAGACTTAGATCTACATGACTTTAAGAGTTGTTTGGAGCGGAGAAGAGCTACAGATGTGATTTTGTTGATGTGAGCAGAGAATTTGAGAGAGGAATCAGTAATGAGACCCAAGTCCAAATTGATTGAGCTTAACAGGAAGCTTAGGAATCGATGAATCATATGAAAGTTGAGAATCTTTAAAACAAAAATTAAGCCGTTTTAAAGTTGACTTTTGAAACCTTAAAATCA</canonical>
            <polymorphic>GATATATAGGCTCAAAGTGGACGATCCGGGTGTCGTTCTATTAGAGGTTTTACGGTAATTAAAAATTTGAGTTTTTCAGATTCACTCTTCGCCAAGTTTGTAGAGATTTTTGAAAATTGCCAGATTTAATTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAGATGTAACCGGTAGAAAAGGAGAAATAGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACAGGGGAACAATTGAAGAAAAATAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGWAAGTAGGCGGAGCCATTTAAAAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATGGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAGAACATAACATTTGAAAAGATGAATGTAGAATTCTGGAGACTTAGATCTACATGACTTTAAGAGTTGTTTGGAGCGGAGAAGAGCTACAGATGTGATTTTGTTGATGTGAGCAGAGAATTTGAGAGAGGAATCAGTAATGAGACCCAAGTCCAAATTGATTGAGCTTAACAGGAAGCTTAGGAATCGATGAATCATATGAAAGTTGAGAATCTTTAAAACAAAAATTAAGCCGTTTTAAAGTTGACTTTTGAAACCTTAAAATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGGAGAAATCGGGTAACTTG</pcr_primer_p1>
		<pcr_primer_p2>CCTAAGCTTCCTGTTAAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>565</pcr_amplicon_size>
		<canonical_amplicon>TAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACAGGGGAACAATTGAAGAAAAATAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGTAAGTAGGCGGAGCCATTTAAAAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATGGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAGAACATAACATTTGAAAAGATGAATGTAGAATTCTGGAGACTTAGATCTACATGACTTTAAGAGTTGTTTGGAGCGGAGAAGAGCTACAGATGTGATTTTGTTGATGTGAGCAGAGAATTTGAGAGAGGAATCAGTAATGAGACCCAAGTCCAAATTGATTGAGCTTAACAGGAAGCTTAGG</canonical_amplicon>
		<polymorphic_amplicon>TAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACAGGGGAACAATTGAAGAAAAATAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGWAAGTAGGCGGAGCCATTTAAAAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATGGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAGAACATAACATTTGAAAAGATGAATGTAGAATTCTGGAGACTTAGATCTACATGACTTTAAGAGTTGTTTGGAGCGGAGAAGAGCTACAGATGTGATTTTGTTGATGTGAGCAGAGAATTTGAGAGAGGAATCAGTAATGAGACCCAAGTCCAAATTGATTGAGCTTAACAGGAAGCTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38938</snp_id>
        <super_contig>c013301126.Contig1</super_contig>
        <contig_pos>23290</contig_pos>
        <strand></strand>
        <context>gcttttagcc[T/C]aygatgtcga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGCGGAGCCATTTAAAAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCC</left_flank>
        <right_flank>ACGATGTCGAATGGAGAACATATTGAGGATAGAGAGACGATCAGAATAGG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTAAAAATTTGAGTTTTTCAGATTCACTCTTCGCCAAGTTTGTAGAGATTTTTGAAAATTGCCAGATTTAATTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAGATGTAACCGGTAGAAAAGGAGAAATAGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACAGGGGAACAATTGAAGAAAAATAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGTAAGTAGGCGGAGCCATTTAAAAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATGGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAGAACATAACATTTGAAAAGATGAATGTAGAATTCTGGAGACTTAGATCTACATGACTTTAAGAGTTGTTTGGAGCGGAGAAGAGCTACAGATGTGATTTTGTTGATGTGAGCAGAGAATTTGAGAGAGGAATCAGTAATGAGACCCAAGTCCAAATTGATTGAGCTTAACAGGAAGCTTAGGAATCGATGAATCATATGAAAGTTGAGAATCTTTAAAACAAAAATTAAGCCGTTTTAAAGTTGACTTTTGAAACCTTAAAATCAAATTCAAATCTTCAATTACTACGTCCACAATATCCAAATTTTCCAAAATAGTCGTT</canonical>
            <polymorphic>AATTAAAAATTTGAGTTTTTCAGATTCACTCTTCGCCAAGTTTGTAGAGATTTTTGAAAATTGCCAGATTTAATTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAGATGTAACCGGTAGAAAAGGAGAAATAGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACAGGGGAACAATTGAAGAAAAATAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGTAAGTAGGCGGAGCCATTTAAAAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCYACGATGTCGAATGGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAGAACATAACATTTGAAAAGATGAATGTAGAATTCTGGAGACTTAGATCTACATGACTTTAAGAGTTGTTTGGAGCGGAGAAGAGCTACAGATGTGATTTTGTTGATGTGAGCAGAGAATTTGAGAGAGGAATCAGTAATGAGACCCAAGTCCAAATTGATTGAGCTTAACAGGAAGCTTAGGAATCGATGAATCATATGAAAGTTGAGAATCTTTAAAACAAAAATTAAGCCGTTTTAAAGTTGACTTTTGAAACCTTAAAATCAAATTCAAATCTTCAATTACTACGTCCACAATATCCAAATTTTCCAAAATAGTCGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGGAGAAATCGGGTAACTTG</pcr_primer_p1>
		<pcr_primer_p2>CCTAAGCTTCCTGTTAAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>565</pcr_amplicon_size>
		<canonical_amplicon>TAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACAGGGGAACAATTGAAGAAAAATAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGTAAGTAGGCGGAGCCATTTAAAAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATGGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAGAACATAACATTTGAAAAGATGAATGTAGAATTCTGGAGACTTAGATCTACATGACTTTAAGAGTTGTTTGGAGCGGAGAAGAGCTACAGATGTGATTTTGTTGATGTGAGCAGAGAATTTGAGAGAGGAATCAGTAATGAGACCCAAGTCCAAATTGATTGAGCTTAACAGGAAGCTTAGG</canonical_amplicon>
		<polymorphic_amplicon>TAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACAGGGGAACAATTGAAGAAAAATAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGTAAGTAGGCGGAGCCATTTAAAAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCYACGATGTCGAATGGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAGAACATAACATTTGAAAAGATGAATGTAGAATTCTGGAGACTTAGATCTACATGACTTTAAGAGTTGTTTGGAGCGGAGAAGAGCTACAGATGTGATTTTGTTGATGTGAGCAGAGAATTTGAGAGAGGAATCAGTAATGAGACCCAAGTCCAAATTGATTGAGCTTAACAGGAAGCTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38939</snp_id>
        <super_contig>c013301126.Contig1</super_contig>
        <contig_pos>23292</contig_pos>
        <strand></strand>
        <context>ttttagccya[C/T]gatgtcgaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGAGCCATTTAAAAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTA</left_flank>
        <right_flank>GATGTCGAATGGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAAATTTGAGTTTTTCAGATTCACTCTTCGCCAAGTTTGTAGAGATTTTTGAAAATTGCCAGATTTAATTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAGATGTAACCGGTAGAAAAGGAGAAATAGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACAGGGGAACAATTGAAGAAAAATAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGTAAGTAGGCGGAGCCATTTAAAAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATGGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAGAACATAACATTTGAAAAGATGAATGTAGAATTCTGGAGACTTAGATCTACATGACTTTAAGAGTTGTTTGGAGCGGAGAAGAGCTACAGATGTGATTTTGTTGATGTGAGCAGAGAATTTGAGAGAGGAATCAGTAATGAGACCCAAGTCCAAATTGATTGAGCTTAACAGGAAGCTTAGGAATCGATGAATCATATGAAAGTTGAGAATCTTTAAAACAAAAATTAAGCCGTTTTAAAGTTGACTTTTGAAACCTTAAAATCAAATTCAAATCTTCAATTACTACGTCCACAATATCCAAATTTTCCAAAATAGTCGTTTT</canonical>
            <polymorphic>TTAAAAATTTGAGTTTTTCAGATTCACTCTTCGCCAAGTTTGTAGAGATTTTTGAAAATTGCCAGATTTAATTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAGATGTAACCGGTAGAAAAGGAGAAATAGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACAGGGGAACAATTGAAGAAAAATAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGTAAGTAGGCGGAGCCATTTAAAAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTAYGATGTCGAATGGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAGAACATAACATTTGAAAAGATGAATGTAGAATTCTGGAGACTTAGATCTACATGACTTTAAGAGTTGTTTGGAGCGGAGAAGAGCTACAGATGTGATTTTGTTGATGTGAGCAGAGAATTTGAGAGAGGAATCAGTAATGAGACCCAAGTCCAAATTGATTGAGCTTAACAGGAAGCTTAGGAATCGATGAATCATATGAAAGTTGAGAATCTTTAAAACAAAAATTAAGCCGTTTTAAAGTTGACTTTTGAAACCTTAAAATCAAATTCAAATCTTCAATTACTACGTCCACAATATCCAAATTTTCCAAAATAGTCGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGGAGAAATCGGGTAACTTG</pcr_primer_p1>
		<pcr_primer_p2>CCTAAGCTTCCTGTTAAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>565</pcr_amplicon_size>
		<canonical_amplicon>TAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACAGGGGAACAATTGAAGAAAAATAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGTAAGTAGGCGGAGCCATTTAAAAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATGGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAGAACATAACATTTGAAAAGATGAATGTAGAATTCTGGAGACTTAGATCTACATGACTTTAAGAGTTGTTTGGAGCGGAGAAGAGCTACAGATGTGATTTTGTTGATGTGAGCAGAGAATTTGAGAGAGGAATCAGTAATGAGACCCAAGTCCAAATTGATTGAGCTTAACAGGAAGCTTAGG</canonical_amplicon>
		<polymorphic_amplicon>TAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACAGGGGAACAATTGAAGAAAAATAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGTAAGTAGGCGGAGCCATTTAAAAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTAYGATGTCGAATGGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAGAACATAACATTTGAAAAGATGAATGTAGAATTCTGGAGACTTAGATCTACATGACTTTAAGAGTTGTTTGGAGCGGAGAAGAGCTACAGATGTGATTTTGTTGATGTGAGCAGAGAATTTGAGAGAGGAATCAGTAATGAGACCCAAGTCCAAATTGATTGAGCTTAACAGGAAGCTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38940</snp_id>
        <super_contig>c013301126.Contig1</super_contig>
        <contig_pos>23316</contig_pos>
        <strand></strand>
        <context>gaacatattg[A/G]ggatagagag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATGGAGAACATATTG</left_flank>
        <right_flank>GGATAGAGAGACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTCTTCGCCAAGTTTGTAGAGATTTTTGAAAATTGCCAGATTTAATTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAGATGTAACCGGTAGAAAAGGAGAAATAGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACAGGGGAACAATTGAAGAAAAATAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGTAAGTAGGCGGAGCCATTTAAAAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATGGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAGAACATAACATTTGAAAAGATGAATGTAGAATTCTGGAGACTTAGATCTACATGACTTTAAGAGTTGTTTGGAGCGGAGAAGAGCTACAGATGTGATTTTGTTGATGTGAGCAGAGAATTTGAGAGAGGAATCAGTAATGAGACCCAAGTCCAAATTGATTGAGCTTAACAGGAAGCTTAGGAATCGATGAATCATATGAAAGTTGAGAATCTTTAAAACAAAAATTAAGCCGTTTTAAAGTTGACTTTTGAAACCTTAAAATCAAATTCAAATCTTCAATTACTACGTCCACAATATCCAAATTTTCCAAAATAGTCGTTTTTTCTTTGAATATTCTAGAATTCTC</canonical>
            <polymorphic>CACTCTTCGCCAAGTTTGTAGAGATTTTTGAAAATTGCCAGATTTAATTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAGATGTAACCGGTAGAAAAGGAGAAATAGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAACTCGGAAGGTAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACAGGGGAACAATTGAAGAAAAATAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGTAAGTAGGCGGAGCCATTTAAAAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATGGAGAACATATTGRGGATAGAGAGACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAGAACATAACATTTGAAAAGATGAATGTAGAATTCTGGAGACTTAGATCTACATGACTTTAAGAGTTGTTTGGAGCGGAGAAGAGCTACAGATGTGATTTTGTTGATGTGAGCAGAGAATTTGAGAGAGGAATCAGTAATGAGACCCAAGTCCAAATTGATTGAGCTTAACAGGAAGCTTAGGAATCGATGAATCATATGAAAGTTGAGAATCTTTAAAACAAAAATTAAGCCGTTTTAAAGTTGACTTTTGAAACCTTAAAATCAAATTCAAATCTTCAATTACTACGTCCACAATATCCAAATTTTCCAAAATAGTCGTTTTTTCTTTGAATATTCTAGAATTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGGAGAAATCGGGTAACTTG</pcr_primer_p1>
		<pcr_primer_p2>CCTAAGCTTCCTGTTAAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>565</pcr_amplicon_size>
		<canonical_amplicon>TAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACAGGGGAACAATTGAAGAAAAATAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGTAAGTAGGCGGAGCCATTTAAAAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATGGAGAACATATTGAGGATAGAGAGACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAGAACATAACATTTGAAAAGATGAATGTAGAATTCTGGAGACTTAGATCTACATGACTTTAAGAGTTGTTTGGAGCGGAGAAGAGCTACAGATGTGATTTTGTTGATGTGAGCAGAGAATTTGAGAGAGGAATCAGTAATGAGACCCAAGTCCAAATTGATTGAGCTTAACAGGAAGCTTAGG</canonical_amplicon>
		<polymorphic_amplicon>TAGGAGAAATCGGGTAACTTGGGAAGTGATGGCGTTCCACAGGGGAACAATTGAAGAAAAATAGTCAGAGGAGTAGGGCTGAACAATAATTAAGTTCATAGGGCGACGAGGGGAGGAGGAGTATTTGACATGTGCATTTAGGTTAGGTAAGTAGGCGGAGCCATTTAAAAATTTATAGAGAAGAATTAGTTGAGCTTTTAGCCTACGATGTCGAATGGAGAACATATTGRGGATAGAGAGACGATCAGAATAGGAACTGTACTGGATATTACAACGCTGGAAAATACACTTAGAGAAAAATCTTAAGGGAGATTCTAGTTTTAGAGCAAGGCGAGAAGAAGGCGGAGGGGAATAAACTACAGAACAATATTCAAGAATCGGGAGAACATAACATTTGAAAAGATGAATGTAGAATTCTGGAGACTTAGATCTACATGACTTTAAGAGTTGTTTGGAGCGGAGAAGAGCTACAGATGTGATTTTGTTGATGTGAGCAGAGAATTTGAGAGAGGAATCAGTAATGAGACCCAAGTCCAAATTGATTGAGCTTAACAGGAAGCTTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38941</snp_id>
        <super_contig>c013400821.Contig4</super_contig>
        <contig_pos>1122</contig_pos>
        <strand></strand>
        <context>CCTTATTGTT[G/T]TTTTGTTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGTCCAACCGTGAGAAGTATTGAAAAATGCAATACGTTTTCCTTATTGTT</left_flank>
        <right_flank>TTTTGTTTTTGACTATGACTGCCAATGGACAAATGGCCGGAGGACTGTCT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTTTCGTTGTGGGACTTCTAGCCAAGGCCACCGGCGTTTCTCTTCCACAGCTCCGATTTTTCGTACCATAATAATAACATGGATGCTTTGAAAAAAGGAGATTCTAGAATGTTCCAAATTTTCGCGAAAAAGATCTTGAAGTTCGGTTTCAACTGTCACATTACAATTGCAATAGCTCGTCCCCCAATAAGAGGGATAAAAGGGATCGAGATAATCGAACCAACTTCCTAATAATTTCTGAACATGATATCACAATTTCTATAGCAATACGTTCGCTGATCAATCGATCTTCCTCATAAAATTCGTAATTTCGATTAGTCATAACCTAGACTTTTCCATTTCTTTTCTCTCTGTTTCTCTCCGTCCAATTTGTTGGTCTTTCGTCGACCCCTATCACACTGCACACTCCCACCCTCTCGACGGTATAAAAAGCGACTGTTGACTGACAGTCCAACCGTGAGAAGTATTGAAAAATGCAATACGTTTTCCTTATTGTTGTTTTGTTTTTGACTATGACTGCCAATGGACAAATGGCCGGAGGACTGTCTGATGCTAATGCTACAGAGTATACTGTAAGTTGTGATAGAGAAGTTTAGCATTTTATTGAGGGTAATTTCAGGGTTCTGCATGGAAATCGATTCCAGAAATCAACGGACAAAACAATGGAGGAAATTATTTGGTTCCAATTAAGGTTAGTTTTGGGAAGAAGAGAATGTTCAAGGTACTGTAAACACTCTTATAGGAGGCAACCCTACACGATCTCGATTATCTCGATTTCTATGAAAGATATCAAAAATGTGTCAACTGACAAATTGTTTATCATAAAATCAGAAGTGTTTTGTCAGTTGGCACATTTTTAGTATATTGCCCAGGATTTGAGATAATTTAGCTCAAAGTACAAGTATAGGGTATCTACCAGAGTGTTTACGGTATTTTAAAAGAGTTCCCCTAATTTCCATTTCTTCAGGTCCTGAAAGCTCAAGTCCAAGTCGTTGCTG</canonical>
            <polymorphic>AGTTTTCGTTGTGGGACTTCTAGCCAAGGCCACCGGCGTTTCTCTTCCACAGCTCCGATTTTTCGTACCATAATAATAACATGGATGCTTTGAAAAAAGGAGATTCTAGAATGTTCCAAATTTTCGCGAAAAAGATCTTGAAGTTCGGTTTCAACTGTCACATTACAATTGCAATAGCTCGTCCCCCAATAAGAGGGATAAAAGGGATCGAGATAATCGAACCAACTTCCTAATAATTTCTGAACATGATATCACAATTTCTATAGCAATACGTTCGCTGATCAATCGATCTTCCTCATAAAATTCGTAATTTCGATTAGTCATAACCTAGACTTTTCCATTTCTTTTCTCTCTGTTTCTCTCCGTCCAATTTGTTGGTCTTTCGTCGACCCCTATCACACTGCACACTCCCACCCTCTCGACGGTATAAAAAGCGACTGTTGACTGACAGTCCAACCGTGAGAAGTATTGAAAAATGCAATACGTTTTCCTTATTGTTKTTTTGTTTTTGACTATGACTGCCAATGGACAAATGGCCGGAGGACTGTCTGATGCTAATGCTACAGAGTATACTGTAAGTTGTGATAGAGAAGTTTAGCATTTTATTGAGGGTAATTTCAGGGTTCTGCATGGAAATCGATTCCAGAAATCAACGGACAAAACAATGGAGGAAATTATTTGGTTCCAATTAAGGTTAGTTTTGGGAAGAAGAGAATGTTCAAGGTACTGTAAACACTCTTATAGGAGGCAACCCTACACGATCTCGATTATCTCGATTTCTATGAAAGATATCAAAAATGTGTCAACTGACAAATTGTTTATCATAAAATCAGAAGTGTTTTGTCAGTTGGCACATTTTTAGTATATTGCCCAGGATTTGAGATAATTTAGCTCAAAGTACAAGTATAGGGTATCTACCAGAGTGTTTACGGTATTTTAAAAGAGTTCCCCTAATTTCCATTTCTTCAGGTCCTGAAAGCTCAAGTCCAAGTCGTTGCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCATAACCTAGACTTTTCCATTT</pcr_primer_p1>
		<pcr_primer_p2>ACTCTGTAGCATTAGCATCAGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCATAACCTAGACTTTTCCATTTCTTTTCTCTCTGTTTCTCTCCGTCCAATTTGTTGGTCTTTCGTCGACCCCTATCACACTGCACACTCCCACCCTCTCGACGGTATAAAAAGCGACTGTTGACTGACAGTCCAACCGTGAGAAGTATTGAAAAATGCAATACGTTTTCCTTATTGTTGTTTTGTTTTTGACTATGACTGCCAATGGACAAATGGCCGGAGGACTGTCTGATGCTAATGCTACAGAGT</canonical_amplicon>
		<polymorphic_amplicon>GTCATAACCTAGACTTTTCCATTTCTTTTCTCTCTGTTTCTCTCCGTCCAATTTGTTGGTCTTTCGTCGACCCCTATCACACTGCACACTCCCACCCTCTCGACGGTATAAAAAGCGACTGTTGACTGACAGTCCAACCGTGAGAAGTATTGAAAAATGCAATACGTTTTCCTTATTGTTKTTTTGTTTTTGACTATGACTGCCAATGGACAAATGGCCGGAGGACTGTCTGATGCTAATGCTACAGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38942</snp_id>
        <super_contig>c013400821.Contig4</super_contig>
        <contig_pos>50699</contig_pos>
        <strand></strand>
        <context>cgagtagttg[G/A]acttgtagat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAAAATAATTTTGCACAAATTCAGTTCACATAGTCCCCTCGAGTAGTTG</left_flank>
        <right_flank>ACTTGTAGATGCTGGCGGAGGTGCTTCGTCGCTACCGACTGAGCTACTGT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAAACGTTAGGAAGCATTTCTATTACAGATTTTACAGTGATTTCAGTGAAACGGTTGTTCGAGGACACATGCATTTTTCAAAAAAACACGAAGGTGGTTATCCATAACATATAAAAAGAGTATTCACATTTGCTTGTCTCTCTGGTTCCTTTATTCTCTTTTTAAAACTATTCCGTTTGACGTAACTAGGCGGTTACTATAAATCCATCAAAAATAGAAAAAAAAACAACCAAAGTTTATGGCATGTGTGTCTGGGGTTTAGGATCATAAATAGAATTGGAGAATCTCTAGGGTCTTGAAGTTTTATCAAGTTTTCTGGGAATTTGAAGATAATGAGTTTTGGTGGTTTTTAGAGCGATTTGATCAGTTTTAATACTACAGTCTCATATTTGTAAGGCCAATGAAACAGTAATTTTTGAAAATTGACTTCAAAAATGGGGCACATGAAAAAAATAATTTTGCACAAATTCAGTTCACATAGTCCCCTCGAGTAGTTGGACTTGTAGATGCTGGCGGAGGTGCTTCGTCGCTACCGACTGAGCTACTGTGGCTCAAGCTGCGCGGCCGACCGATATCGTGCGAACACTAATCACTGTACACTGTCACGTCAAAATACATACCGTAACTCCAGAAAAACACTCTGAAACATTTCCTGTCGCTCCTTCTTCTCGATCAGTTAAAAAACTACTCGTATTCGTAAGGCCAATGTAACAGTAATATTAAAAATGTGATTTTGAAAAAAAATCAGAGTTCATAAAATTCCAAAAGATTTCAAAAATATTATCAGATATCAAAGTTCTGGATATTAATTGTCGGTTCAGGGGTAGAAGAGTCGTAATTTTTCTTTGGGGACCAGGAAAACTTGTTCGAATATCTCGGAAATTACAGTTTTCAATGGAAAATTTGAGAATTAAGATTTCCGAAATTTATTCCTAAAAATTGGGCTGATTGTGAATAAGACGGAGACTGGGCAACAACATGTTGGGTAACAAGCAGGG</canonical>
            <polymorphic>TTAAAACGTTAGGAAGCATTTCTATTACAGATTTTACAGTGATTTCAGTGAAACGGTTGTTCGAGGACACATGCATTTTTCAAAAAAACACGAAGGTGGTTATCCATAACATATAAAAAGAGTATTCACATTTGCTTGTCTCTCTGGTTCCTTTATTCTCTTTTTAAAACTATTCCGTTTGACGTAACTAGGCGGTTACTATAAATCCATCAAAAATAGAAAAAAAAACAACCAAAGTTTATGGCATGTGTGTCTGGGGTTTAGGATCATAAATAGAATTGGAGAATCTCTAGGGTCTTGAAGTTTTATCAAGTTTTCTGGGAATTTGAAGATAATGAGTTTTGGTGGTTTTTAGAGCGATTTGATCAGTTTTAATACTACAGTCTCATATTTGTAAGGCCAATGAAACAGTAATTTTTGAAAATTGACTTCAAAAATGGGGCACATGAAAAAAATAATTTTGCACAAATTCAGTTCACATAGTCCCCTCGAGTAGTTGRACTTGTAGATGCTGGCGGAGGTGCTTCGTCGCTACCGACTGAGCTACTGTGGCTCAAGCTGCGCGGCCGACCGATATCGTGCGAACACTAATCACTGTACACTGTCACGTCAAAATACATACCGTAACTCCAGAAAAACACTCTGAAACATTTCCTGTCGCTCCTTCTTCTCGATCAGTTAAAAAACTACTCGTATTCGTAAGGCCAATGTAACAGTAATATTAAAAATGTGATTTTGAAAAAAAATCAGAGTTCATAAAATTCCAAAAGATTTCAAAAATATTATCAGATATCAAAGTTCTGGATATTAATTGTCGGTTCAGGGGTAGAAGAGTCGTAATTTTTCTTTGGGGACCAGGAAAACTTGTTCGAATATCTCGGAAATTACAGTTTTCAATGGAAAATTTGAGAATTAAGATTTCCGAAATTTATTCCTAAAAATTGGGCTGATTGTGAATAAGACGGAGACTGGGCAACAACATGTTGGGTAACAAGCAGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAAATTGACTTCAAAAATG</pcr_primer_p1>
		<pcr_primer_p2>TTAACTGATCGAGAAGAAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>266</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAAATTGACTTCAAAAATGGGGCACATGAAAAAAATAATTTTGCACAAATTCAGTTCACATAGTCCCCTCGAGTAGTTGGACTTGTAGATGCTGGCGGAGGTGCTTCGTCGCTACCGACTGAGCTACTGTGGCTCAAGCTGCGCGGCCGACCGATATCGTGCGAACACTAATCACTGTACACTGTCACGTCAAAATACATACCGTAACTCCAGAAAAACACTCTGAAACATTTCCTGTCGCTCCTTCTTCTCGATCAGTTAA</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAAATTGACTTCAAAAATGGGGCACATGAAAAAAATAATTTTGCACAAATTCAGTTCACATAGTCCCCTCGAGTAGTTGRACTTGTAGATGCTGGCGGAGGTGCTTCGTCGCTACCGACTGAGCTACTGTGGCTCAAGCTGCGCGGCCGACCGATATCGTGCGAACACTAATCACTGTACACTGTCACGTCAAAATACATACCGTAACTCCAGAAAAACACTCTGAAACATTTCCTGTCGCTCCTTCTTCTCGATCAGTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38943</snp_id>
        <super_contig>c013400821.Contig4</super_contig>
        <contig_pos>50930</contig_pos>
        <strand>+</strand>
        <context>ATTAAAAATR[A/G]GATTTTGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAACTACTCGTATTCGTAAGGCCAATGTAACAGTAATATTAAAAATG</left_flank>
        <right_flank>GATTTTGAAAAAAAATCAGAGTTCATAAAATTCCAAAAGATTTCAAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAAGTTTATGGCATGTGTGTCTGGGGTTTAGGATCATAAATAGAATTGGAGAATCTCTAGGGTCTTGAAGTTTTATCAAGTTTTCTGGGAATTTGAAGATAATGAGTTTTGGTGGTTTTTAGAGCGATTTGATCAGTTTTAATACTACAGTCTCATATTTGTAAGGCCAATGAAACAGTAATTTTTGAAAATTGACTTCAAAAATGGGGCACATGAAAAAAATAATTTTGCACAAATTCAGTTCACATAGTCCCCTCGAGTAGTTGGACTTGTAGATGCTGGCGGAGGTGCTTCGTCGCTACCGACTGAGCTACTGTGGCTCAAGCTGCGCGGCCGACCGATATCGTGCGAACACTAATCACTGTACACTGTCACGTCAAAATACATACCGTAACTCCAGAAAAACACTCTGAAACATTTCCTGTCGCTCCTTCTTCTCGATCAGTTAAAAAACTACTCGTATTCGTAAGGCCAATGTAACAGTAATATTAAAAATGTGATTTTGAAAAAAAATCAGAGTTCATAAAATTCCAAAAGATTTCAAAAATATTATCAGATATCAAAGTTCTGGATATTAATTGTCGGTTCAGGGGTAGAAGAGTCGTAATTTTTCTTTGGGGACCAGGAAAACTTGTTCGAATATCTCGGAAATTACAGTTTTCAATGGAAAATTTGAGAATTAAGATTTCCGAAATTTATTCCTAAAAATTGGGCTGATTGTGAATAAGACGGAGACTGGGCAACAACATGTTGGGTAACAAGCAGGGTTGGGATTTTACGTTTACGGTTTTTCCGGATTTTACGGCATTTCGAGACAACCACAAAGTTTTACAGACCTCCGTAAAACTGTATCCGTAAAATCCATAAAAAACCGTAAAATTAGCAAAATGATTGTTTTTGACTAGCAAAACATATTTTTTTCGGAGTTTGGTGTTATTTCAAATATGTAACATTGCTAAATTTCAATGCCTAAATCCGAAAACTGTGTATTCTCAAAC</canonical>
            <polymorphic>CCAAAGTTTATGGCATGTGTGTCTGGGGTTTAGGATCATAAATAGAATTGGAGAATCTCTAGGGTCTTGAAGTTTTATCAAGTTTTCTGGGAATTTGAAGATAATGAGTTTTGGTGGTTTTTAGAGCGATTTGATCAGTTTTAATACTACAGTCTCATATTTGTAAGGCCAATGAAACAGTAATTTTTGAAAATTGACTTCAAAAATGGGGCACATGAAAAAAATAATTTTGCACAAATTCAGTTCACATAGTCCCCTCGAGTAGTTGGACTTGTAGATGCTGGCGGAGGTGCTTCGTCGCTACCGACTGAGCTACTGTGGCTCAAGCTGCGCGGCCGACCGATATCGTGCGAACACTAATCACTGTACACTGTCACGTCAAAATACATACCGTAACTCCAGAAAAACACTCTGAAACATTTCCTGTCGCTCCTTCTTCTCGATCAGTTAAAAAACTACTCGTATTCGTAAGGCCAATGTAACAGTAATATTAAAAATGRGATTTTGAAAAAAAATCAGAGTTCATAAAATTCCAAAAGATTTCAAAAATATTATCAGATATCAAAGTTCTGGATATTAATTGTCGGTTCAGGGGTAGAAGAGTCGTAATTTTTCTTTGGGGACCAGGAAAACTTGTTCGAATATCTCGGAAATTACAGTTTTCAATGGAAAATTTGAGAATTAAGATTTCCGAAATTTATTCCTAAAAATTGGGCTGATTGTGAATAAGACGGAGACTGGGCAACAACATGTTGGGTAACAAGCAGGGTTGGGATTTTACGTTTACGGTTTTTCCGGATTTTACGGCATTTCGAGACAACCACAAAGTTTTACAGACCTCCGTAAAACTGTATCCGTAAAATCCATAAAAAACCGTAAAATTAGCAAAATGATTGTTTTTGACTAGCAAAACATATTTTTTTCGGAGTTTGGTGTTATTTCAAATATGTAACATTGCTAAATTTCAATGCCTAAATCCGAAAACTGTGTATTCTCAAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>223 112 99 97 95 92 54 45 33 30 28 21 19 13 11 7 7 6 6 2</canonical_bands>
                <polymorphic_bands>315 112 99 97 95 54 45 33 30 28 21 19 13 11 7 7 6 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTCTTCTCGATCAGTTAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGAAAACTGTAATTTCCGAGATA</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>CCTTCTTCTCGATCAGTTAAAAAACTACTCGTATTCGTAAGGCCAATGTAACAGTAATATTAAAAATGTGATTTTGAAAAAAAATCAGAGTTCATAAAATTCCAAAAGATTTCAAAAATATTATCAGATATCAAAGTTCTGGATATTAATTGTCGGTTCAGGGGTAGAAGAGTCGTAATTTTTCTTTGGGGACCAGGAAAACTTGTTCGAATATCTCGGAAATTACAGTTTTCA</canonical_amplicon>
		<polymorphic_amplicon>CCTTCTTCTCGATCAGTTAAAAAACTACTCGTATTCGTAAGGCCAATGTAACAGTAATATTAAAAATGRGATTTTGAAAAAAAATCAGAGTTCATAAAATTCCAAAAGATTTCAAAAATATTATCAGATATCAAAGTTCTGGATATTAATTGTCGGTTCAGGGGTAGAAGAGTCGTAATTTTTCTTTGGGGACCAGGAAAACTTGTTCGAATATCTCGGAAATTACAGTTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38944</snp_id>
        <super_contig>c013400821.Contig4</super_contig>
        <contig_pos>52121</contig_pos>
        <strand>+</strand>
        <context>GCTCATCATC[A/T]AAAAAGTGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCCATGGAGTCTTCCCCCTTTTGCATAGAGCATTCATAAGCTCATCATC</left_flank>
        <right_flank>AAAAAGTGGAGTATTTCGGAAAATAATTACAGCCTTATTGAGCAGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTTTAGTTGGAAATTTGCAAAGCTACATACTTTAAGTATTGCCAAGCTTGAAAAATAGGTTTTACATGTCAAAAACAGTCATTTTGCAAATTTCACGGTTTTCACTGTTTTTACGGAATTTCACGGATTTTAAATCCGCAAATTTTAGTTTTCACGGATTCCGTAAAACATAAAATTTTAAGCTCAGCCCTGATAACAATTAAATGCAAAATACTAGGAAAAACCAATCCACTCATACATGCATTCTTCCCATTTGCCCATTATTTTCCATATTAGCTCCGCCCACTTTCTATCACTTCCTTGTTTTCTGATCCCGCCCGTTTCGTGCCATTGATAAAGAAACAAAACATATTCAAACGAGAATAGACAAAAATTGAGTGGGTTTGGACATTGAGAAAAAAAAGGAGAGGGACCAATAAAAAATTGATGAAAAATGTGAAATGAGCATCCCATGGAGTCTTCCCCCTTTTGCATAGAGCATTCATAAGCTCATCATCAAAAAAGTGGAGTATTTCGGAAAATAATTACAGCCTTATTGAGCAGAAAAAAGAAGAAAAAGGAACGAAGAAAAAGGAGAAAGAAGGTTACGTCACAAAGTGAAAAAAGAAGAGAAAAACGAGCAAATTCGAAATGGCCGGAGGCGCCTAGATTAGTGCGTTCCTATAGGGTTAAAATTGACACAAGTTTGTGTGTATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACCTACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTACTTGACATTCCTGTGGGATCTTCCGACTACTGTGAATCTCGAACCTTCGGTTGAGGTCGTAAATATCAATTGGAGCCTCTGATGAGAGTGTATGAGAGATGAAGAGGAGCAGAGAGCGGTCAAGTTTTTGTGGAATGAAGATACAACATCGTTTTTAGTGTAAATGAGTTGACAAGTGGCATGAAGAGGTGGAAGGAGAAAAGAGCAAGA</canonical>
            <polymorphic>TAGTTTAGTTGGAAATTTGCAAAGCTACATACTTTAAGTATTGCCAAGCTTGAAAAATAGGTTTTACATGTCAAAAACAGTCATTTTGCAAATTTCACGGTTTTCACTGTTTTTACGGAATTTCACGGATTTTAAATCCGCAAATTTTAGTTTTCACGGATTCCGTAAAACATAAAATTTTAAGCTCAGCCCTGATAACAATTAAATGCAAAATACTAGGAAAAACCAATCCACTCATACATGCATTCTTCCCATTTGCCCATTATTTTCCATATTAGCTCCGCCCACTTTCTATCACTTCCTTGTTTTCTGATCCCGCCCGTTTCGTGCCATTGATAAAGAAACAAAACATATTCAAACGAGAATAGACAAAAATTGAGTGGGTTTGGACATTGAGAAAAAAAAGGAGAGGGACCAATAAAAAATTGATGAAAAATGTGAAATGAGCATCCCATGGAGTCTTCCCCCTTTTGCATAGAGCATTCATAAGCTCATCATCWAAAAAGTGGAGTATTTCGGAAAATAATTACAGCCTTATTGAGCAGAAAAAAGAAGAAAAAGGAACGAAGAAAAAGGAGAAAGAAGGTTACGTCACAAAGTGAAAAAAGAAGAGAAAAACGAGCAAATTCGAAATGGCCGGAGGCGCCTAGATTAGTGCGTTCCTATAGGGTTAAAATTGACACAAGTTTGTGTGTATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACCTACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTACTTGACATTCCTGTGGGATCTTCCGACTACTGTGAATCTCGAACCTTCGGTTGAGGTCGTAAATATCAATTGGAGCCTCTGATGAGAGTGTATGAGAGATGAAGAGGAGCAGAGAGCGGTCAAGTTTTTGTGGAATGAAGATACAACATCGTTTTTAGTGTAAATGAGTTGACAAGTGGCATGAAGAGGTGGAAGGAGAAAAGAGCAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAAACATATTCAAACGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TAACCTTCTTTCTCCTTTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACAAAACATATTCAAACGAGAATAGACAAAAATTGAGTGGGTTTGGACATTGAGAAAAAAAAGGAGAGGGACCAATAAAAAATTGATGAAAAATGTGAAATGAGCATCCCATGGAGTCTTCCCCCTTTTGCATAGAGCATTCATAAGCTCATCATCAAAAAAGTGGAGTATTTCGGAAAATAATTACAGCCTTATTGAGCAGAAAAAAGAAGAAAAAGGAACGAAGAAAAAGGAGAAAGAAGGTTA</canonical_amplicon>
		<polymorphic_amplicon>ACAAAACATATTCAAACGAGAATAGACAAAAATTGAGTGGGTTTGGACATTGAGAAAAAAAAGGAGAGGGACCAATAAAAAATTGATGAAAAATGTGAAATGAGCATCCCATGGAGTCTTCCCCCTTTTGCATAGAGCATTCATAAGCTCATCATCWAAAAAGTGGAGTATTTCGGAAAATAATTACAGCCTTATTGAGCAGAAAAAAGAAGAAAAAGGAACGAAGAAAAAGGAGAAAGAAGGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38945</snp_id>
        <super_contig>c013400821.Contig4</super_contig>
        <contig_pos>52135</contig_pos>
        <strand>+</strand>
        <context>AAGTGGAGTA[C/T]TTCGGAAAAR</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCCCTTTTGCATAGAGCATTCATAAGCTCATCATCAAAAAAGTGGAGTA</left_flank>
        <right_flank>TTCGGAAAATAATTACAGCCTTATTGAGCAGAAAAAAGAAGAAAAAGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTGCAAAGCTACATACTTTAAGTATTGCCAAGCTTGAAAAATAGGTTTTACATGTCAAAAACAGTCATTTTGCAAATTTCACGGTTTTCACTGTTTTTACGGAATTTCACGGATTTTAAATCCGCAAATTTTAGTTTTCACGGATTCCGTAAAACATAAAATTTTAAGCTCAGCCCTGATAACAATTAAATGCAAAATACTAGGAAAAACCAATCCACTCATACATGCATTCTTCCCATTTGCCCATTATTTTCCATATTAGCTCCGCCCACTTTCTATCACTTCCTTGTTTTCTGATCCCGCCCGTTTCGTGCCATTGATAAAGAAACAAAACATATTCAAACGAGAATAGACAAAAATTGAGTGGGTTTGGACATTGAGAAAAAAAAGGAGAGGGACCAATAAAAAATTGATGAAAAATGTGAAATGAGCATCCCATGGAGTCTTCCCCCTTTTGCATAGAGCATTCATAAGCTCATCATCAAAAAAGTGGAGTATTTCGGAAAATAATTACAGCCTTATTGAGCAGAAAAAAGAAGAAAAAGGAACGAAGAAAAAGGAGAAAGAAGGTTACGTCACAAAGTGAAAAAAGAAGAGAAAAACGAGCAAATTCGAAATGGCCGGAGGCGCCTAGATTAGTGCGTTCCTATAGGGTTAAAATTGACACAAGTTTGTGTGTATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACCTACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTACTTGACATTCCTGTGGGATCTTCCGACTACTGTGAATCTCGAACCTTCGGTTGAGGTCGTAAATATCAATTGGAGCCTCTGATGAGAGTGTATGAGAGATGAAGAGGAGCAGAGAGCGGTCAAGTTTTTGTGGAATGAAGATACAACATCGTTTTTAGTGTAAATGAGTTGACAAGTGGCATGAAGAGGTGGAAGGAGAAAAGAGCAAGAGTTCGTTTTTCAGA</canonical>
            <polymorphic>ATTTGCAAAGCTACATACTTTAAGTATTGCCAAGCTTGAAAAATAGGTTTTACATGTCAAAAACAGTCATTTTGCAAATTTCACGGTTTTCACTGTTTTTACGGAATTTCACGGATTTTAAATCCGCAAATTTTAGTTTTCACGGATTCCGTAAAACATAAAATTTTAAGCTCAGCCCTGATAACAATTAAATGCAAAATACTAGGAAAAACCAATCCACTCATACATGCATTCTTCCCATTTGCCCATTATTTTCCATATTAGCTCCGCCCACTTTCTATCACTTCCTTGTTTTCTGATCCCGCCCGTTTCGTGCCATTGATAAAGAAACAAAACATATTCAAACGAGAATAGACAAAAATTGAGTGGGTTTGGACATTGAGAAAAAAAAGGAGAGGGACCAATAAAAAATTGATGAAAAATGTGAAATGAGCATCCCATGGAGTCTTCCCCCTTTTGCATAGAGCATTCATAAGCTCATCATCAAAAAAGTGGAGTAYTTCGGAAAATAATTACAGCCTTATTGAGCAGAAAAAAGAAGAAAAAGGAACGAAGAAAAAGGAGAAAGAAGGTTACGTCACAAAGTGAAAAAAGAAGAGAAAAACGAGCAAATTCGAAATGGCCGGAGGCGCCTAGATTAGTGCGTTCCTATAGGGTTAAAATTGACACAAGTTTGTGTGTATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACCTACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTACTTGACATTCCTGTGGGATCTTCCGACTACTGTGAATCTCGAACCTTCGGTTGAGGTCGTAAATATCAATTGGAGCCTCTGATGAGAGTGTATGAGAGATGAAGAGGAGCAGAGAGCGGTCAAGTTTTTGTGGAATGAAGATACAACATCGTTTTTAGTGTAAATGAGTTGACAAGTGGCATGAAGAGGTGGAAGGAGAAAAGAGCAAGAGTTCGTTTTTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAAACATATTCAAACGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TAACCTTCTTTCTCCTTTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACAAAACATATTCAAACGAGAATAGACAAAAATTGAGTGGGTTTGGACATTGAGAAAAAAAAGGAGAGGGACCAATAAAAAATTGATGAAAAATGTGAAATGAGCATCCCATGGAGTCTTCCCCCTTTTGCATAGAGCATTCATAAGCTCATCATCAAAAAAGTGGAGTATTTCGGAAAATAATTACAGCCTTATTGAGCAGAAAAAAGAAGAAAAAGGAACGAAGAAAAAGGAGAAAGAAGGTTA</canonical_amplicon>
		<polymorphic_amplicon>ACAAAACATATTCAAACGAGAATAGACAAAAATTGAGTGGGTTTGGACATTGAGAAAAAAAAGGAGAGGGACCAATAAAAAATTGATGAAAAATGTGAAATGAGCATCCCATGGAGTCTTCCCCCTTTTGCATAGAGCATTCATAAGCTCATCATCAAAAAAGTGGAGTAYTTCGGAAAATAATTACAGCCTTATTGAGCAGAAAAAAGAAGAAAAAGGAACGAAGAAAAAGGAGAAAGAAGGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38946</snp_id>
        <super_contig>c013400821.Contig4</super_contig>
        <contig_pos>52145</contig_pos>
        <strand>+</strand>
        <context>YTTCGGAAAA[A/G]AATTACAGCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATAGAGCATTCATAAGCTCATCATCAAAAAAGTGGAGTATTTCGGAAAA</left_flank>
        <right_flank>AATTACAGCCTTATTGAGCAGAAAAAAGAAGAAAAAGGAACGAAGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACATACTTTAAGTATTGCCAAGCTTGAAAAATAGGTTTTACATGTCAAAAACAGTCATTTTGCAAATTTCACGGTTTTCACTGTTTTTACGGAATTTCACGGATTTTAAATCCGCAAATTTTAGTTTTCACGGATTCCGTAAAACATAAAATTTTAAGCTCAGCCCTGATAACAATTAAATGCAAAATACTAGGAAAAACCAATCCACTCATACATGCATTCTTCCCATTTGCCCATTATTTTCCATATTAGCTCCGCCCACTTTCTATCACTTCCTTGTTTTCTGATCCCGCCCGTTTCGTGCCATTGATAAAGAAACAAAACATATTCAAACGAGAATAGACAAAAATTGAGTGGGTTTGGACATTGAGAAAAAAAAGGAGAGGGACCAATAAAAAATTGATGAAAAATGTGAAATGAGCATCCCATGGAGTCTTCCCCCTTTTGCATAGAGCATTCATAAGCTCATCATCAAAAAAGTGGAGTATTTCGGAAAATAATTACAGCCTTATTGAGCAGAAAAAAGAAGAAAAAGGAACGAAGAAAAAGGAGAAAGAAGGTTACGTCACAAAGTGAAAAAAGAAGAGAAAAACGAGCAAATTCGAAATGGCCGGAGGCGCCTAGATTAGTGCGTTCCTATAGGGTTAAAATTGACACAAGTTTGTGTGTATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACCTACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTACTTGACATTCCTGTGGGATCTTCCGACTACTGTGAATCTCGAACCTTCGGTTGAGGTCGTAAATATCAATTGGAGCCTCTGATGAGAGTGTATGAGAGATGAAGAGGAGCAGAGAGCGGTCAAGTTTTTGTGGAATGAAGATACAACATCGTTTTTAGTGTAAATGAGTTGACAAGTGGCATGAAGAGGTGGAAGGAGAAAAGAGCAAGAGTTCGTTTTTCAGAAAATCCTTCC</canonical>
            <polymorphic>CTACATACTTTAAGTATTGCCAAGCTTGAAAAATAGGTTTTACATGTCAAAAACAGTCATTTTGCAAATTTCACGGTTTTCACTGTTTTTACGGAATTTCACGGATTTTAAATCCGCAAATTTTAGTTTTCACGGATTCCGTAAAACATAAAATTTTAAGCTCAGCCCTGATAACAATTAAATGCAAAATACTAGGAAAAACCAATCCACTCATACATGCATTCTTCCCATTTGCCCATTATTTTCCATATTAGCTCCGCCCACTTTCTATCACTTCCTTGTTTTCTGATCCCGCCCGTTTCGTGCCATTGATAAAGAAACAAAACATATTCAAACGAGAATAGACAAAAATTGAGTGGGTTTGGACATTGAGAAAAAAAAGGAGAGGGACCAATAAAAAATTGATGAAAAATGTGAAATGAGCATCCCATGGAGTCTTCCCCCTTTTGCATAGAGCATTCATAAGCTCATCATCAAAAAAGTGGAGTATTTCGGAAAARAATTACAGCCTTATTGAGCAGAAAAAAGAAGAAAAAGGAACGAAGAAAAAGGAGAAAGAAGGTTACGTCACAAAGTGAAAAAAGAAGAGAAAAACGAGCAAATTCGAAATGGCCGGAGGCGCCTAGATTAGTGCGTTCCTATAGGGTTAAAATTGACACAAGTTTGTGTGTATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACCTACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTACTTGACATTCCTGTGGGATCTTCCGACTACTGTGAATCTCGAACCTTCGGTTGAGGTCGTAAATATCAATTGGAGCCTCTGATGAGAGTGTATGAGAGATGAAGAGGAGCAGAGAGCGGTCAAGTTTTTGTGGAATGAAGATACAACATCGTTTTTAGTGTAAATGAGTTGACAAGTGGCATGAAGAGGTGGAAGGAGAAAAGAGCAAGAGTTCGTTTTTCAGAAAATCCTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAAAACATATTCAAACGAGAAT</pcr_primer_p1>
		<pcr_primer_p2>TAACCTTCTTTCTCCTTTTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACAAAACATATTCAAACGAGAATAGACAAAAATTGAGTGGGTTTGGACATTGAGAAAAAAAAGGAGAGGGACCAATAAAAAATTGATGAAAAATGTGAAATGAGCATCCCATGGAGTCTTCCCCCTTTTGCATAGAGCATTCATAAGCTCATCATCAAAAAAGTGGAGTATTTCGGAAAATAATTACAGCCTTATTGAGCAGAAAAAAGAAGAAAAAGGAACGAAGAAAAAGGAGAAAGAAGGTTA</canonical_amplicon>
		<polymorphic_amplicon>ACAAAACATATTCAAACGAGAATAGACAAAAATTGAGTGGGTTTGGACATTGAGAAAAAAAAGGAGAGGGACCAATAAAAAATTGATGAAAAATGTGAAATGAGCATCCCATGGAGTCTTCCCCCTTTTGCATAGAGCATTCATAAGCTCATCATCAAAAAAGTGGAGTATTTCGGAAAARAATTACAGCCTTATTGAGCAGAAAAAAGAAGAAAAAGGAACGAAGAAAAAGGAGAAAGAAGGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38947</snp_id>
        <super_contig>c013400821.Contig4</super_contig>
        <contig_pos>52313</contig_pos>
        <strand>+</strand>
        <context>ACAAGTTTGT[A/C]YGYATAAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGCGCCTAGATTAGTGCGTTCCTATAGGGTTAAAATTGACACAAGTTTGT</left_flank>
        <right_flank>TGTATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATAACAATTAAATGCAAAATACTAGGAAAAACCAATCCACTCATACATGCATTCTTCCCATTTGCCCATTATTTTCCATATTAGCTCCGCCCACTTTCTATCACTTCCTTGTTTTCTGATCCCGCCCGTTTCGTGCCATTGATAAAGAAACAAAACATATTCAAACGAGAATAGACAAAAATTGAGTGGGTTTGGACATTGAGAAAAAAAAGGAGAGGGACCAATAAAAAATTGATGAAAAATGTGAAATGAGCATCCCATGGAGTCTTCCCCCTTTTGCATAGAGCATTCATAAGCTCATCATCAAAAAAGTGGAGTATTTCGGAAAATAATTACAGCCTTATTGAGCAGAAAAAAGAAGAAAAAGGAACGAAGAAAAAGGAGAAAGAAGGTTACGTCACAAAGTGAAAAAAGAAGAGAAAAACGAGCAAATTCGAAATGGCCGGAGGCGCCTAGATTAGTGCGTTCCTATAGGGTTAAAATTGACACAAGTTTGTGTGTATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACCTACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTACTTGACATTCCTGTGGGATCTTCCGACTACTGTGAATCTCGAACCTTCGGTTGAGGTCGTAAATATCAATTGGAGCCTCTGATGAGAGTGTATGAGAGATGAAGAGGAGCAGAGAGCGGTCAAGTTTTTGTGGAATGAAGATACAACATCGTTTTTAGTGTAAATGAGTTGACAAGTGGCATGAAGAGGTGGAAGGAGAAAAGAGCAAGAGTTCGTTTTTCAGAAAATCCTTCCTTTCCTTAGCTTCCTAGCGGTCAGTTGTATTACTTGCTTGTTTTTAATTTTCGGTTCAAAGTACCGTAAACCTGTAATAAAAGGGCCTCCATATTGCCAACTTTGAGCTGATTTTTCTTGGCTCCGATGCAAGATATCAAAATTTGGCCAACTGATGAAATGTTTATG</canonical>
            <polymorphic>TGATAACAATTAAATGCAAAATACTAGGAAAAACCAATCCACTCATACATGCATTCTTCCCATTTGCCCATTATTTTCCATATTAGCTCCGCCCACTTTCTATCACTTCCTTGTTTTCTGATCCCGCCCGTTTCGTGCCATTGATAAAGAAACAAAACATATTCAAACGAGAATAGACAAAAATTGAGTGGGTTTGGACATTGAGAAAAAAAAGGAGAGGGACCAATAAAAAATTGATGAAAAATGTGAAATGAGCATCCCATGGAGTCTTCCCCCTTTTGCATAGAGCATTCATAAGCTCATCATCAAAAAAGTGGAGTATTTCGGAAAATAATTACAGCCTTATTGAGCAGAAAAAAGAAGAAAAAGGAACGAAGAAAAAGGAGAAAGAAGGTTACGTCACAAAGTGAAAAAAGAAGAGAAAAACGAGCAAATTCGAAATGGCCGGAGGCGCCTAGATTAGTGCGTTCCTATAGGGTTAAAATTGACACAAGTTTGTMTGTATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACCTACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTACTTGACATTCCTGTGGGATCTTCCGACTACTGTGAATCTCGAACCTTCGGTTGAGGTCGTAAATATCAATTGGAGCCTCTGATGAGAGTGTATGAGAGATGAAGAGGAGCAGAGAGCGGTCAAGTTTTTGTGGAATGAAGATACAACATCGTTTTTAGTGTAAATGAGTTGACAAGTGGCATGAAGAGGTGGAAGGAGAAAAGAGCAAGAGTTCGTTTTTCAGAAAATCCTTCCTTTCCTTAGCTTCCTAGCGGTCAGTTGTATTACTTGCTTGTTTTTAATTTTCGGTTCAAAGTACCGTAAACCTGTAATAAAAGGGCCTCCATATTGCCAACTTTGAGCTGATTTTTCTTGGCTCCGATGCAAGATATCAAAATTTGGCCAACTGATGAAATGTTTATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>211 111 86 68 58 56 56 54 53 42 41 32 28 25 19 18 13 10 10 7 2</canonical_bands>
                <polymorphic_bands>211 123 86 68 58 56 56 54 53 42 41 32 28 25 19 18 13 10 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAAGGTTACGTCACAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>AGATTCACAGTAGTCGGAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAAGGTTACGTCACAAAGTGAAAAAAGAAGAGAAAAACGAGCAAATTCGAAATGGCCGGAGGCGCCTAGATTAGTGCGTTCCTATAGGGTTAAAATTGACACAAGTTTGTGTGTATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACCTACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTACTTGACATTCCTGTGGGATCTTCCGACTACTGTGAATCT</canonical_amplicon>
		<polymorphic_amplicon>AAGAAGGTTACGTCACAAAGTGAAAAAAGAAGAGAAAAACGAGCAAATTCGAAATGGCCGGAGGCGCCTAGATTAGTGCGTTCCTATAGGGTTAAAATTGACACAAGTTTGTMTGTATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACCTACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTACTTGACATTCCTGTGGGATCTTCCGACTACTGTGAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38948</snp_id>
        <super_contig>c013400821.Contig4</super_contig>
        <contig_pos>52314</contig_pos>
        <strand>+</strand>
        <context>CAAGTTTGTM[C/T]GYATAAACAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCGCCTAGATTAGTGCGTTCCTATAGGGTTAAAATTGACACAAGTTTGTG</left_flank>
        <right_flank>GTATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATAACAATTAAATGCAAAATACTAGGAAAAACCAATCCACTCATACATGCATTCTTCCCATTTGCCCATTATTTTCCATATTAGCTCCGCCCACTTTCTATCACTTCCTTGTTTTCTGATCCCGCCCGTTTCGTGCCATTGATAAAGAAACAAAACATATTCAAACGAGAATAGACAAAAATTGAGTGGGTTTGGACATTGAGAAAAAAAAGGAGAGGGACCAATAAAAAATTGATGAAAAATGTGAAATGAGCATCCCATGGAGTCTTCCCCCTTTTGCATAGAGCATTCATAAGCTCATCATCAAAAAAGTGGAGTATTTCGGAAAATAATTACAGCCTTATTGAGCAGAAAAAAGAAGAAAAAGGAACGAAGAAAAAGGAGAAAGAAGGTTACGTCACAAAGTGAAAAAAGAAGAGAAAAACGAGCAAATTCGAAATGGCCGGAGGCGCCTAGATTAGTGCGTTCCTATAGGGTTAAAATTGACACAAGTTTGTGTGTATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACCTACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTACTTGACATTCCTGTGGGATCTTCCGACTACTGTGAATCTCGAACCTTCGGTTGAGGTCGTAAATATCAATTGGAGCCTCTGATGAGAGTGTATGAGAGATGAAGAGGAGCAGAGAGCGGTCAAGTTTTTGTGGAATGAAGATACAACATCGTTTTTAGTGTAAATGAGTTGACAAGTGGCATGAAGAGGTGGAAGGAGAAAAGAGCAAGAGTTCGTTTTTCAGAAAATCCTTCCTTTCCTTAGCTTCCTAGCGGTCAGTTGTATTACTTGCTTGTTTTTAATTTTCGGTTCAAAGTACCGTAAACCTGTAATAAAAGGGCCTCCATATTGCCAACTTTGAGCTGATTTTTCTTGGCTCCGATGCAAGATATCAAAATTTGGCCAACTGATGAAATGTTTATGA</canonical>
            <polymorphic>GATAACAATTAAATGCAAAATACTAGGAAAAACCAATCCACTCATACATGCATTCTTCCCATTTGCCCATTATTTTCCATATTAGCTCCGCCCACTTTCTATCACTTCCTTGTTTTCTGATCCCGCCCGTTTCGTGCCATTGATAAAGAAACAAAACATATTCAAACGAGAATAGACAAAAATTGAGTGGGTTTGGACATTGAGAAAAAAAAGGAGAGGGACCAATAAAAAATTGATGAAAAATGTGAAATGAGCATCCCATGGAGTCTTCCCCCTTTTGCATAGAGCATTCATAAGCTCATCATCAAAAAAGTGGAGTATTTCGGAAAATAATTACAGCCTTATTGAGCAGAAAAAAGAAGAAAAAGGAACGAAGAAAAAGGAGAAAGAAGGTTACGTCACAAAGTGAAAAAAGAAGAGAAAAACGAGCAAATTCGAAATGGCCGGAGGCGCCTAGATTAGTGCGTTCCTATAGGGTTAAAATTGACACAAGTTTGTGYGTATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACCTACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTACTTGACATTCCTGTGGGATCTTCCGACTACTGTGAATCTCGAACCTTCGGTTGAGGTCGTAAATATCAATTGGAGCCTCTGATGAGAGTGTATGAGAGATGAAGAGGAGCAGAGAGCGGTCAAGTTTTTGTGGAATGAAGATACAACATCGTTTTTAGTGTAAATGAGTTGACAAGTGGCATGAAGAGGTGGAAGGAGAAAAGAGCAAGAGTTCGTTTTTCAGAAAATCCTTCCTTTCCTTAGCTTCCTAGCGGTCAGTTGTATTACTTGCTTGTTTTTAATTTTCGGTTCAAAGTACCGTAAACCTGTAATAAAAGGGCCTCCATATTGCCAACTTTGAGCTGATTTTTCTTGGCTCCGATGCAAGATATCAAAATTTGGCCAACTGATGAAATGTTTATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>212 111 86 68 58 56 56 54 53 42 40 32 28 25 19 18 13 10 10 7 2</canonical_bands>
                <polymorphic_bands>212 113 86 68 58 56 56 54 53 42 40 32 28 25 19 18 13 10 10 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGAAGGTTACGTCACAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>AGATTCACAGTAGTCGGAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGAAGGTTACGTCACAAAGTGAAAAAAGAAGAGAAAAACGAGCAAATTCGAAATGGCCGGAGGCGCCTAGATTAGTGCGTTCCTATAGGGTTAAAATTGACACAAGTTTGTGTGTATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACCTACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTACTTGACATTCCTGTGGGATCTTCCGACTACTGTGAATCT</canonical_amplicon>
		<polymorphic_amplicon>AAGAAGGTTACGTCACAAAGTGAAAAAAGAAGAGAAAAACGAGCAAATTCGAAATGGCCGGAGGCGCCTAGATTAGTGCGTTCCTATAGGGTTAAAATTGACACAAGTTTGTGYGTATAAACAAATTTCTAAGGACCTTTTTCCCATGGATTTCCATTTTGACCTACTATTTTCTTTTTTCCTTGCTTTTCATTTCCCTTTTCAGACTCTACTTGACATTCCTGTGGGATCTTCCGACTACTGTGAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38949</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>25146</contig_pos>
        <strand>+</strand>
        <context>AGAATGAAGG[C/T]TTAGGTCAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACTGATAATGGAGAGAGCTTGACGTAATTGAAAAGGTTAAGAATGAAGG</left_flank>
        <right_flank>TTAGGTCAGGTTTTGCACGAAAATTACTCAAAAGTGCAGTATGGTTTGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAACAATTATTGAATGTTTCAGAATTCCAGTAAAAAATGACTGCGAGAAAACGGAAAATCGAGGAAAGAGATAAAAAAGAAGATGTGAAAAAGAAGATATTGTCTCCAGAAGCTCAGAAAAAGATGAATGAGTTTTATGATCAACAGAACGAGCTGCTCCAGAAGTTTGAACAGGATCAGGAGACGATTCAAAAGCCAATTAAGAAAGCGGAGGTATGTTGGAGATTCTAGGTCATGGATTCCTAGGGCAGTAGTTTTATAGGAAGAGGATGAGCGATACGAAGACCGAGTTTTGGCTCAAGCGACTTTTGCATTAAACATCGGAAGTCTGATTGGAAATCTTGCCGCTTCGATTATTTCTGGATCACTTTCAATCATGAGGTCAGTTTTTTTTGTCTGTGAACAAAATATCAATACGGTCATGTGCTCTCTTGAGAAGAACGTCGCAAACTGATAATGGAGAGAGCTTGACGTAATTGAAAAGGTTAAGAATGAAGGTTTAGGTCAGGTTTTGCACGAAAATTACTCAAAAGTGCAGTATGGTTTGTTGAACTTTGGAAGGTCTCAACTTCGCTCTAGTTTCTGACCTCAAAATAAAAAAGAAACCTATTTTTTTCAAGTCAGGGGGGGGCTCTTTCGCTGCTTTGCAAAGCTAAAAACTCGAATTGCAATTTTGTTCAGCTGCCCGGTGCCAAAATTTTTTCTGTTGAAAAATGTATATTTAAAACAGGCTCCTCAATTTCCGAGGAAATAACTTTCAGGCAAAAATATTTCCCGGTGGTTGTTGAAAACTGTGCCGCCAAACCGTGGCCAGCTTACAGTTTAGGCTCCGCCCACTTTTCCCCAATTTTTTTTCCTCGGACCTTACGGGGAATAATGCTAGAATTTTCGAAAACCGCGCTCCGCTGAACGAAAAGCTTGTAGTTCAAGTTGGTAACTTCAAAGTTGCTAGCTTCAATTTTCCACAAAAAAACATAATAGTTTTATTTCAAGGATGCG</canonical>
            <polymorphic>TCAACAATTATTGAATGTTTCAGAATTCCAGTAAAAAATGACTGCGAGAAAACGGAAAATCGAGGAAAGAGATAAAAAAGAAGATGTGAAAAAGAAGATATTGTCTCCAGAAGCTCAGAAAAAGATGAATGAGTTTTATGATCAACAGAACGAGCTGCTCCAGAAGTTTGAACAGGATCAGGAGACGATTCAAAAGCCAATTAAGAAAGCGGAGGTATGTTGGAGATTCTAGGTCATGGATTCCTAGGGCAGTAGTTTTATAGGAAGAGGATGAGCGATACGAAGACCGAGTTTTGGCTCAAGCGACTTTTGCATTAAACATCGGAAGTCTGATTGGAAATCTTGCCGCTTCGATTATTTCTGGATCACTTTCAATCATGAGGTCAGTTTTTTTTGTCTGTGAACAAAATATCAATACGGTCATGTGCTCTCTTGAGAAGAACGTCGCAAACTGATAATGGAGAGAGCTTGACGTAATTGAAAAGGTTAAGAATGAAGGYTTAGGTCAGGTTTTGCACGAAAATTACTCAAAAGTGCAGTATGGTTTGTTGAACTTTGGAAGGTCTCAACTTCGCTCTAGTTTCTGACCTCAAAATAAAAAAGAAACCTATTTTTTTCAAGTCAGGGGGGGGCTCTTTCGCTGCTTTGCAAAGCTAAAAACTCGAATTGCAATTTTGTTCAGCTGCCCGGTGCCAAAATTTTTTCTGTTGAAAAATGTATATTTAAAACAGGCTCCTCAATTTCCGAGGAAATAACTTTCAGGCAAAAATATTTCCCGGTGGTTGTTGAAAACTGTGCCGCCAAACCGTGGCCAGCTTACAGTTTAGGCTCCGCCCACTTTTCCCCAATTTTTTTTCCTCGGACCTTACGGGGAATAATGCTAGAATTTTCGAAAACCGCGCTCCGCTGAACGAAAAGCTTGTAGTTCAAGTTGGTAACTTCAAAGTTGCTAGCTTCAATTTTCCACAAAAAAACATAATAGTTTTATTTCAAGGATGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTATTTCTGGATCACTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTGAGGTCAGAAACTAGAGC</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GATTATTTCTGGATCACTTTCAATCATGAGGTCAGTTTTTTTTGTCTGTGAACAAAATATCAATACGGTCATGTGCTCTCTTGAGAAGAACGTCGCAAACTGATAATGGAGAGAGCTTGACGTAATTGAAAAGGTTAAGAATGAAGGTTTAGGTCAGGTTTTGCACGAAAATTACTCAAAAGTGCAGTATGGTTTGTTGAACTTTGGAAGGTCTCAACTTCGCTCTAGTTTCTGACCTCAAAAT</canonical_amplicon>
		<polymorphic_amplicon>GATTATTTCTGGATCACTTTCAATCATGAGGTCAGTTTTTTTTGTCTGTGAACAAAATATCAATACGGTCATGTGCTCTCTTGAGAAGAACGTCGCAAACTGATAATGGAGAGAGCTTGACGTAATTGAAAAGGTTAAGAATGAAGGYTTAGGTCAGGTTTTGCACGAAAATTACTCAAAAGTGCAGTATGGTTTGTTGAACTTTGGAAGGTCTCAACTTCGCTCTAGTTTCTGACCTCAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38950</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>46221</contig_pos>
        <strand></strand>
        <context>CTGTCattaa[T/C]tttaataaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CGGGCCGGGCTTTTTCCCGAATTTCGGAGGCCCGGCGGGCCTGTCATTAA</left_flank>
        <right_flank>TTTAATAAAAAATTTTTGTCTGAACTTGTTCTCTTTTTCTCAAATTTAAT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCGGAGGGCCCTTCAATGGGAGGGGTCTTTGAAATTTTCCTCAGTTGGAAATATCCTTCTTAATTGGAAATATGCATCAAAACTCATGAAAAATGCCTCCATAATAATAAACTTGAAACCAGAAGACGACAAATCCTCTATTACAGTTGCTCCCATTTTTCTCGTTTTCTGTGATAGGTATCAAAAAGTTGTCAACTTACAAATTGTTCACCATAATAACAAAAATATTGTGCCAGTTGACCACTATTTGGTAACTCTTACAGGAATTGAGATACATTTATGTAGTCAAAGTTGATGGCTAGGGGAACCCAGGAGTGCGCGGAACGGATTTCTGATTCCCGAAAATTCAAAACTTCTGGTTTTAAGAAAAACATTTTAAAGGTGGGGGGACAGGAGTTTTTTTGAATTTTTTTTGGAGCTAGGGTATGCATCATACTTGTAACGGGCCGGGCCGGGCTTTTTCCCGAATTTCGGAGGCCCGGCGGGCCTGTCATTAATTTTAATAAAAAATTTTTGTCTGAACTTGTTCTCTTTTTCTCAAATTTAATCATGTTTGAATTTTTGAAATTCTGAAAAACCACATGCCCATTTTTTTTTTGGGTATTTTGTAGTTTGAAATTTGAAAATCCAAAACTTATAGACTCCAATCTATTGATCTCTCTGAACGTTATACATCATGTCCAACCAATTAAACAATGAAACCATGTAATACAAAGAACACAAAAGTACAGTTTTTCCGATTCAGAACAATCATGATTCCTCCCACCAGATTAATTTTTTGTATCGCACTTTTTTGCGGTCCCCCAACTTTTTACTTCGGTCATTTTTCGAATCACAATCATGATTCGCATATTTTCTCTAATATTTCTTTTTGTCTATTTACATTCAGTTACTCTTGCCGATGATTTAATTTTGGTTAAGGTAAGTACAGTAATCCTTTCCTGTGAAAACCTAACAATTCAGCTCGGTGAAAACGCGACTATTCCACTTCCAGTCAG</canonical>
            <polymorphic>TTCCGGAGGGCCCTTCAATGGGAGGGGTCTTTGAAATTTTCCTCAGTTGGAAATATCCTTCTTAATTGGAAATATGCATCAAAACTCATGAAAAATGCCTCCATAATAATAAACTTGAAACCAGAAGACGACAAATCCTCTATTACAGTTGCTCCCATTTTTCTCGTTTTCTGTGATAGGTATCAAAAAGTTGTCAACTTACAAATTGTTCACCATAATAACAAAAATATTGTGCCAGTTGACCACTATTTGGTAACTCTTACAGGAATTGAGATACATTTATGTAGTCAAAGTTGATGGCTAGGGGAACCCAGGAGTGCGCGGAACGGATTTCTGATTCCCGAAAATTCAAAACTTCTGGTTTTAAGAAAAACATTTTAAAGGTGGGGGGACAGGAGTTTTTTTGAATTTTTTTTGGAGCTAGGGTATGCATCATACTTGTAACGGGCCGGGCCGGGCTTTTTCCCGAATTTCGGAGGCCCGGCGGGCCTGTCATTAAYTTTAATAAAAAATTTTTGTCTGAACTTGTTCTCTTTTTCTCAAATTTAATCATGTTTGAATTTTTGAAATTCTGAAAAACCACATGCCCATTTTTTTTTTGGGTATTTTGTAGTTTGAAATTTGAAAATCCAAAACTTATAGACTCCAATCTATTGATCTCTCTGAACGTTATACATCATGTCCAACCAATTAAACAATGAAACCATGTAATACAAAGAACACAAAAGTACAGTTTTTCCGATTCAGAACAATCATGATTCCTCCCACCAGATTAATTTTTTGTATCGCACTTTTTTGCGGTCCCCCAACTTTTTACTTCGGTCATTTTTCGAATCACAATCATGATTCGCATATTTTCTCTAATATTTCTTTTTGTCTATTTACATTCAGTTACTCTTGCCGATGATTTAATTTTGGTTAAGGTAAGTACAGTAATCCTTTCCTGTGAAAACCTAACAATTCAGCTCGGTGAAAACGCGACTATTCCACTTCCAGTCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>496 277 227</canonical_bands>
                <polymorphic_bands>773 227</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>140 136 86 79 70 63 62 61 51 48 42 34 32 29 29 16 13 9</canonical_bands>
                <polymorphic_bands>140 136 86 79 70 63 62 61 51 48 42 42 34 32 29 16 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGGTATGCATCATACTTGTAAC</pcr_primer_p1>
		<pcr_primer_p2>CAGAGAGATCAATAGATTGGAGT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AGGGTATGCATCATACTTGTAACGGGCCGGGCCGGGCTTTTTCCCGAATTTCGGAGGCCCGGCGGGCCTGTCATTAATTTTAATAAAAAATTTTTGTCTGAACTTGTTCTCTTTTTCTCAAATTTAATCATGTTTGAATTTTTGAAATTCTGAAAAACCACATGCCCATTTTTTTTTTGGGTATTTTGTAGTTTGAAATTTGAAAATCCAAAACTTATAGACTCCAATCTATTGATCTCTCTG</canonical_amplicon>
		<polymorphic_amplicon>AGGGTATGCATCATACTTGTAACGGGCCGGGCCGGGCTTTTTCCCGAATTTCGGAGGCCCGGCGGGCCTGTCATTAAYTTTAATAAAAAATTTTTGTCTGAACTTGTTCTCTTTTTCTCAAATTTAATCATGTTTGAATTTTTGAAATTCTGAAAAACCACATGCCCATTTTTTTTTTGGGTATTTTGTAGTTTGAAATTTGAAAATCCAAAACTTATAGACTCCAATCTATTGATCTCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38951</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>170415</contig_pos>
        <strand>+</strand>
        <context>CGAAATTCAA[A/T]TTTTTCGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAACGGTTTTTCAAATTTTGAAATTCTGAACATATTTGGCCGAAATTCAA</left_flank>
        <right_flank>TTTTTCGTTTTTTGATTTTTGATTTCTGTACTCATACATTTGAATTACTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTCTAGGTCTTTTTCTCAAATTTCCAGTCTTACTCTCCGATATTTTATTCATTTTCCCATCTCCTCTTCTTCTCCCTCCATTTCGTTTTTTTCAGTACTTTCTTATTCAATTTTTTGTCGAAAAAAAAGAAAAGTGGTTACGTCCTCGTTTGAAATGTTTTCAGTTTGTAGAGAAGCAACACTTTTTTAGAGACTGCCCGTAGAAAATTGGAAAATTGGAAAAAAAAAACGAGAGAGTTGATTCTATTGAAATGTAGGCTCTAGTCTCTTTTTTTGAATTGAACTGAACTTTTCGAAAATTCTTATAGGACTTTTCTTGTTTTATTGAAAGTTTTTCTTGGTCAAGATTTCGGAATACAAATATTTTGAATTCTATATAATTTTCTTTCAAACTTATATCTCGAACTCCAAAAAACTGTTAAATTTTACGATAAACATTTCAAATTCAACGGTTTTTCAAATTTTGAAATTCTGAACATATTTGGCCGAAATTCAATTTTTTCGTTTTTTGATTTTTGATTTCTGTACTCATACATTTGAATTACTGAATTTCTAAATTTCAAAATTTTTTAATGTCAGATTTTCCAAATCTTCGAATTTTCATTTTCCGATTTTCTGATTTTCTGAATTTCCTGAATTTTAGAAATTGCCAAATTTCCGATTTTACGAACTTTCGAAATTCCATTCTCCGATTTTTAGAATTTCTGAAACTTTGGAATTCATAGATTTGAAAAATTTGGGCTATTTAAATTTTGTAAGTCCTGAAATTCAAATATAATATTGACATTCTGAAATCTCGAAATCCTGAAATTTTGAAATTTTGAAATCCGGAAAATTCTAAAATTCTGAAAACTCTGAAATTCTGAAAATGTTCAGCCTTCTGTTTTTTGAACTTTCAAATTCTAACTTCTGAATTCCCTTGCAAACAGTTTCTCTCTTATCACAAAGAAAACCCAAACCCATTAAAAATCGGAAGGGAATTTTAATTGGATTAGCA</canonical>
            <polymorphic>TTTTTCTAGGTCTTTTTCTCAAATTTCCAGTCTTACTCTCCGATATTTTATTCATTTTCCCATCTCCTCTTCTTCTCCCTCCATTTCGTTTTTTTCAGTACTTTCTTATTCAATTTTTTGTCGAAAAAAAAGAAAAGTGGTTACGTCCTCGTTTGAAATGTTTTCAGTTTGTAGAGAAGCAACACTTTTTTAGAGACTGCCCGTAGAAAATTGGAAAATTGGAAAAAAAAAACGAGAGAGTTGATTCTATTGAAATGTAGGCTCTAGTCTCTTTTTTTGAATTGAACTGAACTTTTCGAAAATTCTTATAGGACTTTTCTTGTTTTATTGAAAGTTTTTCTTGGTCAAGATTTCGGAATACAAATATTTTGAATTCTATATAATTTTCTTTCAAACTTATATCTCGAACTCCAAAAAACTGTTAAATTTTACGATAAACATTTCAAATTCAACGGTTTTTCAAATTTTGAAATTCTGAACATATTTGGCCGAAATTCAAWTTTTTCGTTTTTTGATTTTTGATTTCTGTACTCATACATTTGAATTACTGAATTTCTAAATTTCAAAATTTTTTAATGTCAGATTTTCCAAATCTTCGAATTTTCATTTTCCGATTTTCTGATTTTCTGAATTTCCTGAATTTTAGAAATTGCCAAATTTCCGATTTTACGAACTTTCGAAATTCCATTCTCCGATTTTTAGAATTTCTGAAACTTTGGAATTCATAGATTTGAAAAATTTGGGCTATTTAAATTTTGTAAGTCCTGAAATTCAAATATAATATTGACATTCTGAAATCTCGAAATCCTGAAATTTTGAAATTTTGAAATCCGGAAAATTCTAAAATTCTGAAAACTCTGAAATTCTGAAAATGTTCAGCCTTCTGTTTTTTGAACTTTCAAATTCTAACTTCTGAATTCCCTTGCAAACAGTTTCTCTCTTATCACAAAGAAAACCCAAACCCATTAAAAATCGGAAGGGAATTTTAATTGGATTAGCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>97 90 71 66 63 45 43 43 40 32 31 25 22 22 21 21 21 17 17 17 17 17 17 15 14 13 10 9 9 8 8 8 8 8 8 8 8 6 5</canonical_bands>
                <polymorphic_bands>97 90 71 66 63 50 43 43 40 32 31 25 22 22 21 21 21 17 17 17 17 17 17 15 14 13 10 9 9 8 8 8 8 8 8 8 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTCAACGGTTTTTCAAAT</pcr_primer_p1>
		<pcr_primer_p2>CAAGGGAATTCAGAAGTTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>481</pcr_amplicon_size>
		<canonical_amplicon>AAATTCAACGGTTTTTCAAATTTTGAAATTCTGAACATATTTGGCCGAAATTCAATTTTTTCGTTTTTTGATTTTTGATTTCTGTACTCATACATTTGAATTACTGAATTTCTAAATTTCAAAATTTTTTAATGTCAGATTTTCCAAATCTTCGAATTTTCATTTTCCGATTTTCTGATTTTCTGAATTTCCTGAATTTTAGAAATTGCCAAATTTCCGATTTTACGAACTTTCGAAATTCCATTCTCCGATTTTTAGAATTTCTGAAACTTTGGAATTCATAGATTTGAAAAATTTGGGCTATTTAAATTTTGTAAGTCCTGAAATTCAAATATAATATTGACATTCTGAAATCTCGAAATCCTGAAATTTTGAAATTTTGAAATCCGGAAAATTCTAAAATTCTGAAAACTCTGAAATTCTGAAAATGTTCAGCCTTCTGTTTTTTGAACTTTCAAATTCTAACTTCTGAATTCCCTTG</canonical_amplicon>
		<polymorphic_amplicon>AAATTCAACGGTTTTTCAAATTTTGAAATTCTGAACATATTTGGCCGAAATTCAAWTTTTTCGTTTTTTGATTTTTGATTTCTGTACTCATACATTTGAATTACTGAATTTCTAAATTTCAAAATTTTTTAATGTCAGATTTTCCAAATCTTCGAATTTTCATTTTCCGATTTTCTGATTTTCTGAATTTCCTGAATTTTAGAAATTGCCAAATTTCCGATTTTACGAACTTTCGAAATTCCATTCTCCGATTTTTAGAATTTCTGAAACTTTGGAATTCATAGATTTGAAAAATTTGGGCTATTTAAATTTTGTAAGTCCTGAAATTCAAATATAATATTGACATTCTGAAATCTCGAAATCCTGAAATTTTGAAATTTTGAAATCCGGAAAATTCTAAAATTCTGAAAACTCTGAAATTCTGAAAATGTTCAGCCTTCTGTTTTTTGAACTTTCAAATTCTAACTTCTGAATTCCCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38952</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>170447</contig_pos>
        <strand></strand>
        <context>ATTTCTGTAC[T/A]CATACATTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TATTTGGCCGAAATTCAATTTTTTCGTTTTTTGATTTTTGATTTCTGTAC</left_flank>
        <right_flank>CATACATTTGAATTACTGAATTTCTAAATTTCAAAATTTTTTAATGTCAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACTCTCCGATATTTTATTCATTTTCCCATCTCCTCTTCTTCTCCCTCCATTTCGTTTTTTTCAGTACTTTCTTATTCAATTTTTTGTCGAAAAAAAAGAAAAGTGGTTACGTCCTCGTTTGAAATGTTTTCAGTTTGTAGAGAAGCAACACTTTTTTAGAGACTGCCCGTAGAAAATTGGAAAATTGGAAAAAAAAAACGAGAGAGTTGATTCTATTGAAATGTAGGCTCTAGTCTCTTTTTTTGAATTGAACTGAACTTTTCGAAAATTCTTATAGGACTTTTCTTGTTTTATTGAAAGTTTTTCTTGGTCAAGATTTCGGAATACAAATATTTTGAATTCTATATAATTTTCTTTCAAACTTATATCTCGAACTCCAAAAAACTGTTAAATTTTACGATAAACATTTCAAATTCAACGGTTTTTCAAATTTTGAAATTCTGAACATATTTGGCCGAAATTCAATTTTTTCGTTTTTTGATTTTTGATTTCTGTACTCATACATTTGAATTACTGAATTTCTAAATTTCAAAATTTTTTAATGTCAGATTTTCCAAATCTTCGAATTTTCATTTTCCGATTTTCTGATTTTCTGAATTTCCTGAATTTTAGAAATTGCCAAATTTCCGATTTTACGAACTTTCGAAATTCCATTCTCCGATTTTTAGAATTTCTGAAACTTTGGAATTCATAGATTTGAAAAATTTGGGCTATTTAAATTTTGTAAGTCCTGAAATTCAAATATAATATTGACATTCTGAAATCTCGAAATCCTGAAATTTTGAAATTTTGAAATCCGGAAAATTCTAAAATTCTGAAAACTCTGAAATTCTGAAAATGTTCAGCCTTCTGTTTTTTGAACTTTCAAATTCTAACTTCTGAATTCCCTTGCAAACAGTTTCTCTCTTATCACAAAGAAAACCCAAACCCATTAAAAATCGGAAGGGAATTTTAATTGGATTAGCAAAATGTCATTTTTTTAAATCTTCTTTTTTCTC</canonical>
            <polymorphic>TTACTCTCCGATATTTTATTCATTTTCCCATCTCCTCTTCTTCTCCCTCCATTTCGTTTTTTTCAGTACTTTCTTATTCAATTTTTTGTCGAAAAAAAAGAAAAGTGGTTACGTCCTCGTTTGAAATGTTTTCAGTTTGTAGAGAAGCAACACTTTTTTAGAGACTGCCCGTAGAAAATTGGAAAATTGGAAAAAAAAAACGAGAGAGTTGATTCTATTGAAATGTAGGCTCTAGTCTCTTTTTTTGAATTGAACTGAACTTTTCGAAAATTCTTATAGGACTTTTCTTGTTTTATTGAAAGTTTTTCTTGGTCAAGATTTCGGAATACAAATATTTTGAATTCTATATAATTTTCTTTCAAACTTATATCTCGAACTCCAAAAAACTGTTAAATTTTACGATAAACATTTCAAATTCAACGGTTTTTCAAATTTTGAAATTCTGAACATATTTGGCCGAAATTCAATTTTTTCGTTTTTTGATTTTTGATTTCTGTACWCATACATTTGAATTACTGAATTTCTAAATTTCAAAATTTTTTAATGTCAGATTTTCCAAATCTTCGAATTTTCATTTTCCGATTTTCTGATTTTCTGAATTTCCTGAATTTTAGAAATTGCCAAATTTCCGATTTTACGAACTTTCGAAATTCCATTCTCCGATTTTTAGAATTTCTGAAACTTTGGAATTCATAGATTTGAAAAATTTGGGCTATTTAAATTTTGTAAGTCCTGAAATTCAAATATAATATTGACATTCTGAAATCTCGAAATCCTGAAATTTTGAAATTTTGAAATCCGGAAAATTCTAAAATTCTGAAAACTCTGAAATTCTGAAAATGTTCAGCCTTCTGTTTTTTGAACTTTCAAATTCTAACTTCTGAATTCCCTTGCAAACAGTTTCTCTCTTATCACAAAGAAAACCCAAACCCATTAAAAATCGGAAGGGAATTTTAATTGGATTAGCAAAATGTCATTTTTTTAAATCTTCTTTTTTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>505 430 65</canonical_bands>
                <polymorphic_bands>935 65</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTCAACGGTTTTTCAAAT</pcr_primer_p1>
		<pcr_primer_p2>CAAGGGAATTCAGAAGTTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>481</pcr_amplicon_size>
		<canonical_amplicon>AAATTCAACGGTTTTTCAAATTTTGAAATTCTGAACATATTTGGCCGAAATTCAATTTTTTCGTTTTTTGATTTTTGATTTCTGTACTCATACATTTGAATTACTGAATTTCTAAATTTCAAAATTTTTTAATGTCAGATTTTCCAAATCTTCGAATTTTCATTTTCCGATTTTCTGATTTTCTGAATTTCCTGAATTTTAGAAATTGCCAAATTTCCGATTTTACGAACTTTCGAAATTCCATTCTCCGATTTTTAGAATTTCTGAAACTTTGGAATTCATAGATTTGAAAAATTTGGGCTATTTAAATTTTGTAAGTCCTGAAATTCAAATATAATATTGACATTCTGAAATCTCGAAATCCTGAAATTTTGAAATTTTGAAATCCGGAAAATTCTAAAATTCTGAAAACTCTGAAATTCTGAAAATGTTCAGCCTTCTGTTTTTTGAACTTTCAAATTCTAACTTCTGAATTCCCTTG</canonical_amplicon>
		<polymorphic_amplicon>AAATTCAACGGTTTTTCAAATTTTGAAATTCTGAACATATTTGGCCGAAATTCAATTTTTTCGTTTTTTGATTTTTGATTTCTGTACWCATACATTTGAATTACTGAATTTCTAAATTTCAAAATTTTTTAATGTCAGATTTTCCAAATCTTCGAATTTTCATTTTCCGATTTTCTGATTTTCTGAATTTCCTGAATTTTAGAAATTGCCAAATTTCCGATTTTACGAACTTTCGAAATTCCATTCTCCGATTTTTAGAATTTCTGAAACTTTGGAATTCATAGATTTGAAAAATTTGGGCTATTTAAATTTTGTAAGTCCTGAAATTCAAATATAATATTGACATTCTGAAATCTCGAAATCCTGAAATTTTGAAATTTTGAAATCCGGAAAATTCTAAAATTCTGAAAACTCTGAAATTCTGAAAATGTTCAGCCTTCTGTTTTTTGAACTTTCAAATTCTAACTTCTGAATTCCCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38953</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>170703</contig_pos>
        <strand></strand>
        <context>ataatattga[C/T]attctgaaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTGGGCTATTTAAATTTTGTAAGTCCTGAAATTCAAATATAATATTGA</left_flank>
        <right_flank>ATTCTGAAATCTCGAAATCCTGAAATTTTGAAATTTTGAAATCCGGAAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACTTTTCGAAAATTCTTATAGGACTTTTCTTGTTTTATTGAAAGTTTTTCTTGGTCAAGATTTCGGAATACAAATATTTTGAATTCTATATAATTTTCTTTCAAACTTATATCTCGAACTCCAAAAAACTGTTAAATTTTACGATAAACATTTCAAATTCAACGGTTTTTCAAATTTTGAAATTCTGAACATATTTGGCCGAAATTCAATTTTTTCGTTTTTTGATTTTTGATTTCTGTACTCATACATTTGAATTACTGAATTTCTAAATTTCAAAATTTTTTAATGTCAGATTTTCCAAATCTTCGAATTTTCATTTTCCGATTTTCTGATTTTCTGAATTTCCTGAATTTTAGAAATTGCCAAATTTCCGATTTTACGAACTTTCGAAATTCCATTCTCCGATTTTTAGAATTTCTGAAACTTTGGAATTCATAGATTTGAAAAATTTGGGCTATTTAAATTTTGTAAGTCCTGAAATTCAAATATAATATTGACATTCTGAAATCTCGAAATCCTGAAATTTTGAAATTTTGAAATCCGGAAAATTCTAAAATTCTGAAAACTCTGAAATTCTGAAAATGTTCAGCCTTCTGTTTTTTGAACTTTCAAATTCTAACTTCTGAATTCCCTTGCAAACAGTTTCTCTCTTATCACAAAGAAAACCCAAACCCATTAAAAATCGGAAGGGAATTTTAATTGGATTAGCAAAATGTCATTTTTTTAAATCTTCTTTTTTCTCCTATCACATGGTTTTTTTCAACCGATTTTATGTGTCCATTTTAACGATTCCACTCATTTGAATAATGCATTTTCATCTTCGATTTTTTCTATTTTAGTACAACCAGTTCTGTCTTTTTGTTTCGTTTTTCGATAGGTGTTGAAGTTTTTCTTTGTTTCTTTCTTTTTTTTTATCGGTGTGATTTTTGGGAAAAAAAGCATCCAAAAGAAAGGAAACATGGAATCAGTTTTAGTGTTTTTCTTTTTTTGTGTTTTTT</canonical>
            <polymorphic>GAACTTTTCGAAAATTCTTATAGGACTTTTCTTGTTTTATTGAAAGTTTTTCTTGGTCAAGATTTCGGAATACAAATATTTTGAATTCTATATAATTTTCTTTCAAACTTATATCTCGAACTCCAAAAAACTGTTAAATTTTACGATAAACATTTCAAATTCAACGGTTTTTCAAATTTTGAAATTCTGAACATATTTGGCCGAAATTCAATTTTTTCGTTTTTTGATTTTTGATTTCTGTACTCATACATTTGAATTACTGAATTTCTAAATTTCAAAATTTTTTAATGTCAGATTTTCCAAATCTTCGAATTTTCATTTTCCGATTTTCTGATTTTCTGAATTTCCTGAATTTTAGAAATTGCCAAATTTCCGATTTTACGAACTTTCGAAATTCCATTCTCCGATTTTTAGAATTTCTGAAACTTTGGAATTCATAGATTTGAAAAATTTGGGCTATTTAAATTTTGTAAGTCCTGAAATTCAAATATAATATTGAYATTCTGAAATCTCGAAATCCTGAAATTTTGAAATTTTGAAATCCGGAAAATTCTAAAATTCTGAAAACTCTGAAATTCTGAAAATGTTCAGCCTTCTGTTTTTTGAACTTTCAAATTCTAACTTCTGAATTCCCTTGCAAACAGTTTCTCTCTTATCACAAAGAAAACCCAAACCCATTAAAAATCGGAAGGGAATTTTAATTGGATTAGCAAAATGTCATTTTTTTAAATCTTCTTTTTTCTCCTATCACATGGTTTTTTTCAACCGATTTTATGTGTCCATTTTAACGATTCCACTCATTTGAATAATGCATTTTCATCTTCGATTTTTTCTATTTTAGTACAACCAGTTCTGTCTTTTTGTTTCGTTTTTCGATAGGTGTTGAAGTTTTTCTTTGTTTCTTTCTTTTTTTTTATCGGTGTGATTTTTGGGAAAAAAAGCATCCAAAAGAAAGGAAACATGGAATCAGTTTTAGTGTTTTTCTTTTTTTGTGTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCAACGGTTTTTCAAAT</pcr_primer_p1>
		<pcr_primer_p2>CAAGGGAATTCAGAAGTTAGAA</pcr_primer_p2>
		<pcr_amplicon_size>481</pcr_amplicon_size>
		<canonical_amplicon>AAATTCAACGGTTTTTCAAATTTTGAAATTCTGAACATATTTGGCCGAAATTCAATTTTTTCGTTTTTTGATTTTTGATTTCTGTACTCATACATTTGAATTACTGAATTTCTAAATTTCAAAATTTTTTAATGTCAGATTTTCCAAATCTTCGAATTTTCATTTTCCGATTTTCTGATTTTCTGAATTTCCTGAATTTTAGAAATTGCCAAATTTCCGATTTTACGAACTTTCGAAATTCCATTCTCCGATTTTTAGAATTTCTGAAACTTTGGAATTCATAGATTTGAAAAATTTGGGCTATTTAAATTTTGTAAGTCCTGAAATTCAAATATAATATTGACATTCTGAAATCTCGAAATCCTGAAATTTTGAAATTTTGAAATCCGGAAAATTCTAAAATTCTGAAAACTCTGAAATTCTGAAAATGTTCAGCCTTCTGTTTTTTGAACTTTCAAATTCTAACTTCTGAATTCCCTTG</canonical_amplicon>
		<polymorphic_amplicon>AAATTCAACGGTTTTTCAAATTTTGAAATTCTGAACATATTTGGCCGAAATTCAATTTTTTCGTTTTTTGATTTTTGATTTCTGTACTCATACATTTGAATTACTGAATTTCTAAATTTCAAAATTTTTTAATGTCAGATTTTCCAAATCTTCGAATTTTCATTTTCCGATTTTCTGATTTTCTGAATTTCCTGAATTTTAGAAATTGCCAAATTTCCGATTTTACGAACTTTCGAAATTCCATTCTCCGATTTTTAGAATTTCTGAAACTTTGGAATTCATAGATTTGAAAAATTTGGGCTATTTAAATTTTGTAAGTCCTGAAATTCAAATATAATATTGAYATTCTGAAATCTCGAAATCCTGAAATTTTGAAATTTTGAAATCCGGAAAATTCTAAAATTCTGAAAACTCTGAAATTCTGAAAATGTTCAGCCTTCTGTTTTTTGAACTTTCAAATTCTAACTTCTGAATTCCCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38954</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>170880</contig_pos>
        <strand>+</strand>
        <context>ACCCAAACCC[A/T]TTAAAAATCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAATTCCCTTGCAAACAGTTTCTCTCTTATCACAAAGAAAACCCAAACCC</left_flank>
        <right_flank>TTAAAAATCGGAAGGGAATTTTAATTGGATTAGCAAAATGTCATTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAAATTCTGAACATATTTGGCCGAAATTCAATTTTTTCGTTTTTTGATTTTTGATTTCTGTACTCATACATTTGAATTACTGAATTTCTAAATTTCAAAATTTTTTAATGTCAGATTTTCCAAATCTTCGAATTTTCATTTTCCGATTTTCTGATTTTCTGAATTTCCTGAATTTTAGAAATTGCCAAATTTCCGATTTTACGAACTTTCGAAATTCCATTCTCCGATTTTTAGAATTTCTGAAACTTTGGAATTCATAGATTTGAAAAATTTGGGCTATTTAAATTTTGTAAGTCCTGAAATTCAAATATAATATTGACATTCTGAAATCTCGAAATCCTGAAATTTTGAAATTTTGAAATCCGGAAAATTCTAAAATTCTGAAAACTCTGAAATTCTGAAAATGTTCAGCCTTCTGTTTTTTGAACTTTCAAATTCTAACTTCTGAATTCCCTTGCAAACAGTTTCTCTCTTATCACAAAGAAAACCCAAACCCATTAAAAATCGGAAGGGAATTTTAATTGGATTAGCAAAATGTCATTTTTTTAAATCTTCTTTTTTCTCCTATCACATGGTTTTTTTCAACCGATTTTATGTGTCCATTTTAACGATTCCACTCATTTGAATAATGCATTTTCATCTTCGATTTTTTCTATTTTAGTACAACCAGTTCTGTCTTTTTGTTTCGTTTTTCGATAGGTGTTGAAGTTTTTCTTTGTTTCTTTCTTTTTTTTTATCGGTGTGATTTTTGGGAAAAAAAGCATCCAAAAGAAAGGAAACATGGAATCAGTTTTAGTGTTTTTCTTTTTTTGTGTTTTTTTACAGTCACGAAATGACCGAAAAATCAACAAAATTCCAAAAAATCTTTTAAATATCCCTAGAGAGCTTTTTCAATTTTTAGTGTTCATTTTCAACAACACAAGAATTTTTGGGAACTCGAATTCTCAAAATTATCCTTTACCACCTTAACAAACCCACATGATTTTTCTCTATTACG</canonical>
            <polymorphic>TTTGAAATTCTGAACATATTTGGCCGAAATTCAATTTTTTCGTTTTTTGATTTTTGATTTCTGTACTCATACATTTGAATTACTGAATTTCTAAATTTCAAAATTTTTTAATGTCAGATTTTCCAAATCTTCGAATTTTCATTTTCCGATTTTCTGATTTTCTGAATTTCCTGAATTTTAGAAATTGCCAAATTTCCGATTTTACGAACTTTCGAAATTCCATTCTCCGATTTTTAGAATTTCTGAAACTTTGGAATTCATAGATTTGAAAAATTTGGGCTATTTAAATTTTGTAAGTCCTGAAATTCAAATATAATATTGACATTCTGAAATCTCGAAATCCTGAAATTTTGAAATTTTGAAATCCGGAAAATTCTAAAATTCTGAAAACTCTGAAATTCTGAAAATGTTCAGCCTTCTGTTTTTTGAACTTTCAAATTCTAACTTCTGAATTCCCTTGCAAACAGTTTCTCTCTTATCACAAAGAAAACCCAAACCCWTTAAAAATCGGAAGGGAATTTTAATTGGATTAGCAAAATGTCATTTTTTTAAATCTTCTTTTTTCTCCTATCACATGGTTTTTTTCAACCGATTTTATGTGTCCATTTTAACGATTCCACTCATTTGAATAATGCATTTTCATCTTCGATTTTTTCTATTTTAGTACAACCAGTTCTGTCTTTTTGTTTCGTTTTTCGATAGGTGTTGAAGTTTTTCTTTGTTTCTTTCTTTTTTTTTATCGGTGTGATTTTTGGGAAAAAAAGCATCCAAAAGAAAGGAAACATGGAATCAGTTTTAGTGTTTTTCTTTTTTTGTGTTTTTTTACAGTCACGAAATGACCGAAAAATCAACAAAATTCCAAAAAATCTTTTAAATATCCCTAGAGAGCTTTTTCAATTTTTAGTGTTCATTTTCAACAACACAAGAATTTTTGGGAACTCGAATTCTCAAAATTATCCTTTACCACCTTAACAAACCCACATGATTTTTCTCTATTACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAACTTTCAAATTCTAACTTCTG</pcr_primer_p1>
		<pcr_primer_p2>CAGAACTGGTTGTACTAAAATAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TGAACTTTCAAATTCTAACTTCTGAATTCCCTTGCAAACAGTTTCTCTCTTATCACAAAGAAAACCCAAACCCATTAAAAATCGGAAGGGAATTTTAATTGGATTAGCAAAATGTCATTTTTTTAAATCTTCTTTTTTCTCCTATCACATGGTTTTTTTCAACCGATTTTATGTGTCCATTTTAACGATTCCACTCATTTGAATAATGCATTTTCATCTTCGATTTTTTCTATTTTAGTACAACCAGTTCTG</canonical_amplicon>
		<polymorphic_amplicon>TGAACTTTCAAATTCTAACTTCTGAATTCCCTTGCAAACAGTTTCTCTCTTATCACAAAGAAAACCCAAACCCWTTAAAAATCGGAAGGGAATTTTAATTGGATTAGCAAAATGTCATTTTTTTAAATCTTCTTTTTTCTCCTATCACATGGTTTTTTTCAACCGATTTTATGTGTCCATTTTAACGATTCCACTCATTTGAATAATGCATTTTCATCTTCGATTTTTTCTATTTTAGTACAACCAGTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38955</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>170931</contig_pos>
        <strand></strand>
        <context>TCATTTTTTT[A/T]AATCTTCTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAAAAATCGGAAGGGAATTTTAATTGGATTAGCAAAATGTCATTTTTTT</left_flank>
        <right_flank>AATCTTCTTTTTTCTCCTATCACATGGTTTTTTTCAACCGATTTTATGTG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTGATTTCTGTACTCATACATTTGAATTACTGAATTTCTAAATTTCAAAATTTTTTAATGTCAGATTTTCCAAATCTTCGAATTTTCATTTTCCGATTTTCTGATTTTCTGAATTTCCTGAATTTTAGAAATTGCCAAATTTCCGATTTTACGAACTTTCGAAATTCCATTCTCCGATTTTTAGAATTTCTGAAACTTTGGAATTCATAGATTTGAAAAATTTGGGCTATTTAAATTTTGTAAGTCCTGAAATTCAAATATAATATTGACATTCTGAAATCTCGAAATCCTGAAATTTTGAAATTTTGAAATCCGGAAAATTCTAAAATTCTGAAAACTCTGAAATTCTGAAAATGTTCAGCCTTCTGTTTTTTGAACTTTCAAATTCTAACTTCTGAATTCCCTTGCAAACAGTTTCTCTCTTATCACAAAGAAAACCCAAACCCATTAAAAATCGGAAGGGAATTTTAATTGGATTAGCAAAATGTCATTTTTTTAAATCTTCTTTTTTCTCCTATCACATGGTTTTTTTCAACCGATTTTATGTGTCCATTTTAACGATTCCACTCATTTGAATAATGCATTTTCATCTTCGATTTTTTCTATTTTAGTACAACCAGTTCTGTCTTTTTGTTTCGTTTTTCGATAGGTGTTGAAGTTTTTCTTTGTTTCTTTCTTTTTTTTTATCGGTGTGATTTTTGGGAAAAAAAGCATCCAAAAGAAAGGAAACATGGAATCAGTTTTAGTGTTTTTCTTTTTTTGTGTTTTTTTACAGTCACGAAATGACCGAAAAATCAACAAAATTCCAAAAAATCTTTTAAATATCCCTAGAGAGCTTTTTCAATTTTTAGTGTTCATTTTCAACAACACAAGAATTTTTGGGAACTCGAATTCTCAAAATTATCCTTTACCACCTTAACAAACCCACATGATTTTTCTCTATTACGAAATATAATCTGTTTTGTCCCATTGGAAAAATTTCTAGAAATTTAATTTAA</canonical>
            <polymorphic>TTTTGATTTCTGTACTCATACATTTGAATTACTGAATTTCTAAATTTCAAAATTTTTTAATGTCAGATTTTCCAAATCTTCGAATTTTCATTTTCCGATTTTCTGATTTTCTGAATTTCCTGAATTTTAGAAATTGCCAAATTTCCGATTTTACGAACTTTCGAAATTCCATTCTCCGATTTTTAGAATTTCTGAAACTTTGGAATTCATAGATTTGAAAAATTTGGGCTATTTAAATTTTGTAAGTCCTGAAATTCAAATATAATATTGACATTCTGAAATCTCGAAATCCTGAAATTTTGAAATTTTGAAATCCGGAAAATTCTAAAATTCTGAAAACTCTGAAATTCTGAAAATGTTCAGCCTTCTGTTTTTTGAACTTTCAAATTCTAACTTCTGAATTCCCTTGCAAACAGTTTCTCTCTTATCACAAAGAAAACCCAAACCCATTAAAAATCGGAAGGGAATTTTAATTGGATTAGCAAAATGTCATTTTTTTWAATCTTCTTTTTTCTCCTATCACATGGTTTTTTTCAACCGATTTTATGTGTCCATTTTAACGATTCCACTCATTTGAATAATGCATTTTCATCTTCGATTTTTTCTATTTTAGTACAACCAGTTCTGTCTTTTTGTTTCGTTTTTCGATAGGTGTTGAAGTTTTTCTTTGTTTCTTTCTTTTTTTTTATCGGTGTGATTTTTGGGAAAAAAAGCATCCAAAAGAAAGGAAACATGGAATCAGTTTTAGTGTTTTTCTTTTTTTGTGTTTTTTTACAGTCACGAAATGACCGAAAAATCAACAAAATTCCAAAAAATCTTTTAAATATCCCTAGAGAGCTTTTTCAATTTTTAGTGTTCATTTTCAACAACACAAGAATTTTTGGGAACTCGAATTCTCAAAATTATCCTTTACCACCTTAACAAACCCACATGATTTTTCTCTATTACGAAATATAATCTGTTTTGTCCCATTGGAAAAATTTCTAGAAATTTAATTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>322 265 234 179</canonical_bands>
                <polymorphic_bands>587 234 179</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>263 217 176 98 74 59 57 28 20 5 3</canonical_bands>
                <polymorphic_bands>263 217 176 98 87 74 57 20 5 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTATCACAAAGAAAACCCAAAC</pcr_primer_p1>
		<pcr_primer_p2>GAAACAAAGAAAAACTTCAACAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTATCACAAAGAAAACCCAAACCCATTAAAAATCGGAAGGGAATTTTAATTGGATTAGCAAAATGTCATTTTTTTAAATCTTCTTTTTTCTCCTATCACATGGTTTTTTTCAACCGATTTTATGTGTCCATTTTAACGATTCCACTCATTTGAATAATGCATTTTCATCTTCGATTTTTTCTATTTTAGTACAACCAGTTCTGTCTTTTTGTTTCGTTTTTCGATAGGTGTTGAAGTTTTTCTTTGTTTC</canonical_amplicon>
		<polymorphic_amplicon>TTATCACAAAGAAAACCCAAACCCATTAAAAATCGGAAGGGAATTTTAATTGGATTAGCAAAATGTCATTTTTTTWAATCTTCTTTTTTCTCCTATCACATGGTTTTTTTCAACCGATTTTATGTGTCCATTTTAACGATTCCACTCATTTGAATAATGCATTTTCATCTTCGATTTTTTCTATTTTAGTACAACCAGTTCTGTCTTTTTGTTTCGTTTTTCGATAGGTGTTGAAGTTTTTCTTTGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38956</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>171318</contig_pos>
        <strand>+</strand>
        <context>ATTTTTGGGA[A/T]YTCGAATTCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTTTTTCAATTTTTAGTGTTCATTTTCAACAACACAAGAATTTTTGGGA</left_flank>
        <right_flank>CTCGAATTCTCAAAATTATCCTTTACCACCTTAACAAACCCACATGATTT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTAACTTCTGAATTCCCTTGCAAACAGTTTCTCTCTTATCACAAAGAAAACCCAAACCCATTAAAAATCGGAAGGGAATTTTAATTGGATTAGCAAAATGTCATTTTTTTAAATCTTCTTTTTTCTCCTATCACATGGTTTTTTTCAACCGATTTTATGTGTCCATTTTAACGATTCCACTCATTTGAATAATGCATTTTCATCTTCGATTTTTTCTATTTTAGTACAACCAGTTCTGTCTTTTTGTTTCGTTTTTCGATAGGTGTTGAAGTTTTTCTTTGTTTCTTTCTTTTTTTTTATCGGTGTGATTTTTGGGAAAAAAAGCATCCAAAAGAAAGGAAACATGGAATCAGTTTTAGTGTTTTTCTTTTTTTGTGTTTTTTTACAGTCACGAAATGACCGAAAAATCAACAAAATTCCAAAAAATCTTTTAAATATCCCTAGAGAGCTTTTTCAATTTTTAGTGTTCATTTTCAACAACACAAGAATTTTTGGGAACTCGAATTCTCAAAATTATCCTTTACCACCTTAACAAACCCACATGATTTTTCTCTATTACGAAATATAATCTGTTTTGTCCCATTGGAAAAATTTCTAGAAATTTAATTTAAGTTATGAAATTGTAGCACCTAGTAGTCATCCAAAATTATCAGAATAATTTTCAAATTTCGGAATTTCGGAATTCCAAAATTTTTGAATTTCAAAGTTTTGAGATTTTCGAGTTTTAGAATTTCGGGATTTTTGGATTTCAAATGTTCAATTTTTAAAGAAGAAAATTGAACGGAATAGCACATTATAAGGATCTAGCAAAATAGTTTTAGCAGAAATTCAATATTATTTCCGAATGATTTCTAGACATTTTTCATCTCGAAAACTAGATTTTGTTCACCGTAAGACCTCTAATAGAAGGACCCCCGCACTGTCAAGTTTGAGCTGATATTTTTTGGCTCCTCTGCAAGATAATATTATGAAAAATGTATTAATTGATAACACTTTTG</canonical>
            <polymorphic>TTCTAACTTCTGAATTCCCTTGCAAACAGTTTCTCTCTTATCACAAAGAAAACCCAAACCCATTAAAAATCGGAAGGGAATTTTAATTGGATTAGCAAAATGTCATTTTTTTAAATCTTCTTTTTTCTCCTATCACATGGTTTTTTTCAACCGATTTTATGTGTCCATTTTAACGATTCCACTCATTTGAATAATGCATTTTCATCTTCGATTTTTTCTATTTTAGTACAACCAGTTCTGTCTTTTTGTTTCGTTTTTCGATAGGTGTTGAAGTTTTTCTTTGTTTCTTTCTTTTTTTTTATCGGTGTGATTTTTGGGAAAAAAAGCATCCAAAAGAAAGGAAACATGGAATCAGTTTTAGTGTTTTTCTTTTTTTGTGTTTTTTTACAGTCACGAAATGACCGAAAAATCAACAAAATTCCAAAAAATCTTTTAAATATCCCTAGAGAGCTTTTTCAATTTTTAGTGTTCATTTTCAACAACACAAGAATTTTTGGGAWCTCGAATTCTCAAAATTATCCTTTACCACCTTAACAAACCCACATGATTTTTCTCTATTACGAAATATAATCTGTTTTGTCCCATTGGAAAAATTTCTAGAAATTTAATTTAAGTTATGAAATTGTAGCACCTAGTAGTCATCCAAAATTATCAGAATAATTTTCAAATTTCGGAATTTCGGAATTCCAAAATTTTTGAATTTCAAAGTTTTGAGATTTTCGAGTTTTAGAATTTCGGGATTTTTGGATTTCAAATGTTCAATTTTTAAAGAAGAAAATTGAACGGAATAGCACATTATAAGGATCTAGCAAAATAGTTTTAGCAGAAATTCAATATTATTTCCGAATGATTTCTAGACATTTTTCATCTCGAAAACTAGATTTTGTTCACCGTAAGACCTCTAATAGAAGGACCCCCGCACTGTCAAGTTTGAGCTGATATTTTTTGGCTCCTCTGCAAGATAATATTATGAAAAATGTATTAATTGATAACACTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGGAATCAGTTTTAGTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGGGACAAAACAGATTATATTTC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CATGGAATCAGTTTTAGTGTTTTTCTTTTTTTGTGTTTTTTTACAGTCACGAAATGACCGAAAAATCAACAAAATTCCAAAAAATCTTTTAAATATCCCTAGAGAGCTTTTTCAATTTTTAGTGTTCATTTTCAACAACACAAGAATTTTTGGGAACTCGAATTCTCAAAATTATCCTTTACCACCTTAACAAACCCACATGATTTTTCTCTATTACGAAATATAATCTGTTTTGTCCCA</canonical_amplicon>
		<polymorphic_amplicon>CATGGAATCAGTTTTAGTGTTTTTCTTTTTTTGTGTTTTTTTACAGTCACGAAATGACCGAAAAATCAACAAAATTCCAAAAAATCTTTTAAATATCCCTAGAGAGCTTTTTCAATTTTTAGTGTTCATTTTCAACAACACAAGAATTTTTGGGAWCTCGAATTCTCAAAATTATCCTTTACCACCTTAACAAACCCACATGATTTTTCTCTATTACGAAATATAATCTGTTTTGTCCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38957</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>171319</contig_pos>
        <strand>+</strand>
        <context>TTTTTGGGAW[C/T]TCGAATTCTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTTTCAATTTTTAGTGTTCATTTTCAACAACACAAGAATTTTTGGGAA</left_flank>
        <right_flank>TCGAATTCTCAAAATTATCCTTTACCACCTTAACAAACCCACATGATTTT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAACTTCTGAATTCCCTTGCAAACAGTTTCTCTCTTATCACAAAGAAAACCCAAACCCATTAAAAATCGGAAGGGAATTTTAATTGGATTAGCAAAATGTCATTTTTTTAAATCTTCTTTTTTCTCCTATCACATGGTTTTTTTCAACCGATTTTATGTGTCCATTTTAACGATTCCACTCATTTGAATAATGCATTTTCATCTTCGATTTTTTCTATTTTAGTACAACCAGTTCTGTCTTTTTGTTTCGTTTTTCGATAGGTGTTGAAGTTTTTCTTTGTTTCTTTCTTTTTTTTTATCGGTGTGATTTTTGGGAAAAAAAGCATCCAAAAGAAAGGAAACATGGAATCAGTTTTAGTGTTTTTCTTTTTTTGTGTTTTTTTACAGTCACGAAATGACCGAAAAATCAACAAAATTCCAAAAAATCTTTTAAATATCCCTAGAGAGCTTTTTCAATTTTTAGTGTTCATTTTCAACAACACAAGAATTTTTGGGAACTCGAATTCTCAAAATTATCCTTTACCACCTTAACAAACCCACATGATTTTTCTCTATTACGAAATATAATCTGTTTTGTCCCATTGGAAAAATTTCTAGAAATTTAATTTAAGTTATGAAATTGTAGCACCTAGTAGTCATCCAAAATTATCAGAATAATTTTCAAATTTCGGAATTTCGGAATTCCAAAATTTTTGAATTTCAAAGTTTTGAGATTTTCGAGTTTTAGAATTTCGGGATTTTTGGATTTCAAATGTTCAATTTTTAAAGAAGAAAATTGAACGGAATAGCACATTATAAGGATCTAGCAAAATAGTTTTAGCAGAAATTCAATATTATTTCCGAATGATTTCTAGACATTTTTCATCTCGAAAACTAGATTTTGTTCACCGTAAGACCTCTAATAGAAGGACCCCCGCACTGTCAAGTTTGAGCTGATATTTTTTGGCTCCTCTGCAAGATAATATTATGAAAAATGTATTAATTGATAACACTTTTGT</canonical>
            <polymorphic>TCTAACTTCTGAATTCCCTTGCAAACAGTTTCTCTCTTATCACAAAGAAAACCCAAACCCATTAAAAATCGGAAGGGAATTTTAATTGGATTAGCAAAATGTCATTTTTTTAAATCTTCTTTTTTCTCCTATCACATGGTTTTTTTCAACCGATTTTATGTGTCCATTTTAACGATTCCACTCATTTGAATAATGCATTTTCATCTTCGATTTTTTCTATTTTAGTACAACCAGTTCTGTCTTTTTGTTTCGTTTTTCGATAGGTGTTGAAGTTTTTCTTTGTTTCTTTCTTTTTTTTTATCGGTGTGATTTTTGGGAAAAAAAGCATCCAAAAGAAAGGAAACATGGAATCAGTTTTAGTGTTTTTCTTTTTTTGTGTTTTTTTACAGTCACGAAATGACCGAAAAATCAACAAAATTCCAAAAAATCTTTTAAATATCCCTAGAGAGCTTTTTCAATTTTTAGTGTTCATTTTCAACAACACAAGAATTTTTGGGAAYTCGAATTCTCAAAATTATCCTTTACCACCTTAACAAACCCACATGATTTTTCTCTATTACGAAATATAATCTGTTTTGTCCCATTGGAAAAATTTCTAGAAATTTAATTTAAGTTATGAAATTGTAGCACCTAGTAGTCATCCAAAATTATCAGAATAATTTTCAAATTTCGGAATTTCGGAATTCCAAAATTTTTGAATTTCAAAGTTTTGAGATTTTCGAGTTTTAGAATTTCGGGATTTTTGGATTTCAAATGTTCAATTTTTAAAGAAGAAAATTGAACGGAATAGCACATTATAAGGATCTAGCAAAATAGTTTTAGCAGAAATTCAATATTATTTCCGAATGATTTCTAGACATTTTTCATCTCGAAAACTAGATTTTGTTCACCGTAAGACCTCTAATAGAAGGACCCCCGCACTGTCAAGTTTGAGCTGATATTTTTTGGCTCCTCTGCAAGATAATATTATGAAAAATGTATTAATTGATAACACTTTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGGAATCAGTTTTAGTGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGGGACAAAACAGATTATATTTC</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CATGGAATCAGTTTTAGTGTTTTTCTTTTTTTGTGTTTTTTTACAGTCACGAAATGACCGAAAAATCAACAAAATTCCAAAAAATCTTTTAAATATCCCTAGAGAGCTTTTTCAATTTTTAGTGTTCATTTTCAACAACACAAGAATTTTTGGGAACTCGAATTCTCAAAATTATCCTTTACCACCTTAACAAACCCACATGATTTTTCTCTATTACGAAATATAATCTGTTTTGTCCCA</canonical_amplicon>
		<polymorphic_amplicon>CATGGAATCAGTTTTAGTGTTTTTCTTTTTTTGTGTTTTTTTACAGTCACGAAATGACCGAAAAATCAACAAAATTCCAAAAAATCTTTTAAATATCCCTAGAGAGCTTTTTCAATTTTTAGTGTTCATTTTCAACAACACAAGAATTTTTGGGAAYTCGAATTCTCAAAATTATCCTTTACCACCTTAACAAACCCACATGATTTTTCTCTATTACGAAATATAATCTGTTTTGTCCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38958</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>236346</contig_pos>
        <strand>+</strand>
        <context>TCGAGGGGGC[A/C]CATCGAGGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGCTTCCCTCTTCTTTTATAGTAATCTTCCTGAGGTCAATCGAGGGGGC</left_flank>
        <right_flank>CATCGAGGGTCGTGGGTTTTTACGTCTATATTTTGGTGGAGAATTCAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGGTGATAAGGAAGTGATCACGCCAAATATGTATCGTTAAATAGTTGGAGAATTGTGTTTATGACTATTTTTGTCATTCTAGATGTGCTCTAGTATTGTTGGATTTGAGGTCGTGCAGTAGAACCTCTGCTGCCGTGACAATCTTGAACATCACGCACTATGTTCCTCCTAGCTGCTATTAGGGCCAGCTTCAGCTCTCACTCCTGCGGATCCAGGCTCCTGGTTCCTGCCTCCAGGATGTCAGATCAATCTCTTAGTTTCTTCTTATTTTCAGTCTGAACCATCAGGAACCACTTCAACTGATCCTGATCCAGACCCGGGCACCCCCAGTCACCAAGACCAGGGCTTCAAGACGCGGGCTCCAAACCCGGCTCCAGGACCCGGGCACCAGGTTCCCGATCCAGGATCGATCTGGAGCCCAGAAAAGGGCAGAACTGATTCTTCCCTTTGCTTCCCTCTTCTTTTATAGTAATCTTCCTGAGGTCAATCGAGGGGGCCCATCGAGGGTCGTGGGTTTTTACGTCTATATTTTGGTGGAGAATTCAATTTGTAAGAACTTTTTGGCACGCAGATTTTTTTATAAAACAAATAAATTTTTTATTTACGTTCAAAAAATTGAGATTTGATTTTTGAAATTCTGTGAAACTCTATGAAAAAATTGTCCCTTTGAGCCTAATTATCTCGTTTCCTGTTTAAGATATCGAAAAATTGTCAACCAATGAATTGTTTCTGATATTAAGGTGAACATTTTTGCTGTCAATAATTTATTGATATCTTTTACAGAAAACTAGAAAAAGTTGGTCAAAGTTGACTCTAATAGAATCCCCTCTCCCCAAACCGCAAACTTTGAGTCAATTTATCTGGATTCCTATGAAATATATCGAAAAGCGATGATGCAAAAAAACTGTTTTATTCTCAAATTTTATTTACTGTTTATGAAGCCTAGCCTTCGATCGATAAGGGTACGGATTACGGTAGACATTTCCACGATTCGGACA</canonical>
            <polymorphic>TATGGTGATAAGGAAGTGATCACGCCAAATATGTATCGTTAAATAGTTGGAGAATTGTGTTTATGACTATTTTTGTCATTCTAGATGTGCTCTAGTATTGTTGGATTTGAGGTCGTGCAGTAGAACCTCTGCTGCCGTGACAATCTTGAACATCACGCACTATGTTCCTCCTAGCTGCTATTAGGGCCAGCTTCAGCTCTCACTCCTGCGGATCCAGGCTCCTGGTTCCTGCCTCCAGGATGTCAGATCAATCTCTTAGTTTCTTCTTATTTTCAGTCTGAACCATCAGGAACCACTTCAACTGATCCTGATCCAGACCCGGGCACCCCCAGTCACCAAGACCAGGGCTTCAAGACGCGGGCTCCAAACCCGGCTCCAGGACCCGGGCACCAGGTTCCCGATCCAGGATCGATCTGGAGCCCAGAAAAGGGCAGAACTGATTCTTCCCTTTGCTTCCCTCTTCTTTTATAGTAATCTTCCTGAGGTCAATCGAGGGGGCMCATCGAGGGTCGTGGGTTTTTACGTCTATATTTTGGTGGAGAATTCAATTTGTAAGAACTTTTTGGCACGCAGATTTTTTTATAAAACAAATAAATTTTTTATTTACGTTCAAAAAATTGAGATTTGATTTTTGAAATTCTGTGAAACTCTATGAAAAAATTGTCCCTTTGAGCCTAATTATCTCGTTTCCTGTTTAAGATATCGAAAAATTGTCAACCAATGAATTGTTTCTGATATTAAGGTGAACATTTTTGCTGTCAATAATTTATTGATATCTTTTACAGAAAACTAGAAAAAGTTGGTCAAAGTTGACTCTAATAGAATCCCCTCTCCCCAAACCGCAAACTTTGAGTCAATTTATCTGGATTCCTATGAAATATATCGAAAAGCGATGATGCAAAAAAACTGTTTTATTCTCAAATTTTATTTACTGTTTATGAAGCCTAGCCTTCGATCGATAAGGGTACGGATTACGGTAGACATTTCCACGATTCGGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGGCCC</site>
                <isoschizomers>
                    <enzyme>ApaI</enzyme>
                    <enzyme>Bsp120I</enzyme>
                    <enzyme>PspOMI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>504 195 184 117</canonical_bands>
                <polymorphic_bands>621 195 184</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>500 363 79 58</canonical_bands>
                <polymorphic_bands>579 363 58</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>500 325 111 64</canonical_bands>
                <polymorphic_bands>611 325 64</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>500 234 91 79 38 32 26</canonical_bands>
                <polymorphic_bands>579 234 91 38 32 26</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>488 319 79 34 27 23 23 7</canonical_bands>
                <polymorphic_bands>567 319 34 27 23 23 7</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>503 212 79 65 38 33 23 12 7 7 7 7 7</canonical_bands>
                <polymorphic_bands>582 212 65 38 33 23 12 7 7 7 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>502 312 186</canonical_bands>
                <polymorphic_bands>814 186</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>270 175 174 129 79 52 46 22 14 12 12 6 5 4</canonical_bands>
                <polymorphic_bands>270 254 174 129 52 46 22 14 12 12 6 5 4</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>504 379 117</canonical_bands>
                <polymorphic_bands>621 379</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAACTGATCCTGATCCAGAC</pcr_primer_p1>
		<pcr_primer_p2>TTCTTACAAATTGAATTCTCCAC</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>CAACTGATCCTGATCCAGACCCGGGCACCCCCAGTCACCAAGACCAGGGCTTCAAGACGCGGGCTCCAAACCCGGCTCCAGGACCCGGGCACCAGGTTCCCGATCCAGGATCGATCTGGAGCCCAGAAAAGGGCAGAACTGATTCTTCCCTTTGCTTCCCTCTTCTTTTATAGTAATCTTCCTGAGGTCAATCGAGGGGGCCCATCGAGGGTCGTGGGTTTTTACGTCTATATTTTGGTGGAGAATTCAATTTGTAAGAA</canonical_amplicon>
		<polymorphic_amplicon>CAACTGATCCTGATCCAGACCCGGGCACCCCCAGTCACCAAGACCAGGGCTTCAAGACGCGGGCTCCAAACCCGGCTCCAGGACCCGGGCACCAGGTTCCCGATCCAGGATCGATCTGGAGCCCAGAAAAGGGCAGAACTGATTCTTCCCTTTGCTTCCCTCTTCTTTTATAGTAATCTTCCTGAGGTCAATCGAGGGGGCMCATCGAGGGTCGTGGGTTTTTACGTCTATATTTTGGTGGAGAATTCAATTTGTAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38959</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>236565</contig_pos>
        <strand></strand>
        <context>aattgtcaac[C/T]aatgaattgt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGAGCCTAATTATCTCGTTTCCTGTTTAAGATATCGAAAAATTGTCAAC</left_flank>
        <right_flank>AATGAATTGTTTCTGATATTAAGGTGAACATTTTTGCTGTCAATAATTTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTGGTTCCTGCCTCCAGGATGTCAGATCAATCTCTTAGTTTCTTCTTATTTTCAGTCTGAACCATCAGGAACCACTTCAACTGATCCTGATCCAGACCCGGGCACCCCCAGTCACCAAGACCAGGGCTTCAAGACGCGGGCTCCAAACCCGGCTCCAGGACCCGGGCACCAGGTTCCCGATCCAGGATCGATCTGGAGCCCAGAAAAGGGCAGAACTGATTCTTCCCTTTGCTTCCCTCTTCTTTTATAGTAATCTTCCTGAGGTCAATCGAGGGGGCCCATCGAGGGTCGTGGGTTTTTACGTCTATATTTTGGTGGAGAATTCAATTTGTAAGAACTTTTTGGCACGCAGATTTTTTTATAAAACAAATAAATTTTTTATTTACGTTCAAAAAATTGAGATTTGATTTTTGAAATTCTGTGAAACTCTATGAAAAAATTGTCCCTTTGAGCCTAATTATCTCGTTTCCTGTTTAAGATATCGAAAAATTGTCAACCAATGAATTGTTTCTGATATTAAGGTGAACATTTTTGCTGTCAATAATTTATTGATATCTTTTACAGAAAACTAGAAAAAGTTGGTCAAAGTTGACTCTAATAGAATCCCCTCTCCCCAAACCGCAAACTTTGAGTCAATTTATCTGGATTCCTATGAAATATATCGAAAAGCGATGATGCAAAAAAACTGTTTTATTCTCAAATTTTATTTACTGTTTATGAAGCCTAGCCTTCGATCGATAAGGGTACGGATTACGGTAGACATTTCCACGATTCGGACACTGACAATAACCAGCATCCGGGCCAGGTCCACCTGGCAATCCTTGTTCTCCAGGTGTTCCATTTCGTCCCTGCATTCCAGGATATCCTGGTTTCCCTTCAGGACCTGCGGGACCAGGTAGCCCAATTCTTCCTGATTTTCCATCTCTTCCAGGTTGTCCTTCCTTTCCTGGATACCCTGGACGACCCATTCTTCCTGGTAATCCTCTCCCTTTCTTTCC</canonical>
            <polymorphic>TCCTGGTTCCTGCCTCCAGGATGTCAGATCAATCTCTTAGTTTCTTCTTATTTTCAGTCTGAACCATCAGGAACCACTTCAACTGATCCTGATCCAGACCCGGGCACCCCCAGTCACCAAGACCAGGGCTTCAAGACGCGGGCTCCAAACCCGGCTCCAGGACCCGGGCACCAGGTTCCCGATCCAGGATCGATCTGGAGCCCAGAAAAGGGCAGAACTGATTCTTCCCTTTGCTTCCCTCTTCTTTTATAGTAATCTTCCTGAGGTCAATCGAGGGGGCCCATCGAGGGTCGTGGGTTTTTACGTCTATATTTTGGTGGAGAATTCAATTTGTAAGAACTTTTTGGCACGCAGATTTTTTTATAAAACAAATAAATTTTTTATTTACGTTCAAAAAATTGAGATTTGATTTTTGAAATTCTGTGAAACTCTATGAAAAAATTGTCCCTTTGAGCCTAATTATCTCGTTTCCTGTTTAAGATATCGAAAAATTGTCAACYAATGAATTGTTTCTGATATTAAGGTGAACATTTTTGCTGTCAATAATTTATTGATATCTTTTACAGAAAACTAGAAAAAGTTGGTCAAAGTTGACTCTAATAGAATCCCCTCTCCCCAAACCGCAAACTTTGAGTCAATTTATCTGGATTCCTATGAAATATATCGAAAAGCGATGATGCAAAAAAACTGTTTTATTCTCAAATTTTATTTACTGTTTATGAAGCCTAGCCTTCGATCGATAAGGGTACGGATTACGGTAGACATTTCCACGATTCGGACACTGACAATAACCAGCATCCGGGCCAGGTCCACCTGGCAATCCTTGTTCTCCAGGTGTTCCATTTCGTCCCTGCATTCCAGGATATCCTGGTTTCCCTTCAGGACCTGCGGGACCAGGTAGCCCAATTCTTCCTGATTTTCCATCTCTTCCAGGTTGTCCTTCCTTTCCTGGATACCCTGGACGACCCATTCTTCCTGGTAATCCTCTCCCTTTCTTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGAGAATTCAATTTGTAAGAAC</pcr_primer_p1>
		<pcr_primer_p2>AGGCTTCATAAACAGTAAATAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>410</pcr_amplicon_size>
		<canonical_amplicon>TGGAGAATTCAATTTGTAAGAACTTTTTGGCACGCAGATTTTTTTATAAAACAAATAAATTTTTTATTTACGTTCAAAAAATTGAGATTTGATTTTTGAAATTCTGTGAAACTCTATGAAAAAATTGTCCCTTTGAGCCTAATTATCTCGTTTCCTGTTTAAGATATCGAAAAATTGTCAACCAATGAATTGTTTCTGATATTAAGGTGAACATTTTTGCTGTCAATAATTTATTGATATCTTTTACAGAAAACTAGAAAAAGTTGGTCAAAGTTGACTCTAATAGAATCCCCTCTCCCCAAACCGCAAACTTTGAGTCAATTTATCTGGATTCCTATGAAATATATCGAAAAGCGATGATGCAAAAAAACTGTTTTATTCTCAAATTTTATTTACTGTTTATGAAGCCT</canonical_amplicon>
		<polymorphic_amplicon>TGGAGAATTCAATTTGTAAGAACTTTTTGGCACGCAGATTTTTTTATAAAACAAATAAATTTTTTATTTACGTTCAAAAAATTGAGATTTGATTTTTGAAATTCTGTGAAACTCTATGAAAAAATTGTCCCTTTGAGCCTAATTATCTCGTTTCCTGTTTAAGATATCGAAAAATTGTCAACYAATGAATTGTTTCTGATATTAAGGTGAACATTTTTGCTGTCAATAATTTATTGATATCTTTTACAGAAAACTAGAAAAAGTTGGTCAAAGTTGACTCTAATAGAATCCCCTCTCCCCAAACCGCAAACTTTGAGTCAATTTATCTGGATTCCTATGAAATATATCGAAAAGCGATGATGCAAAAAAACTGTTTTATTCTCAAATTTTATTTACTGTTTATGAAGCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38960</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>238665</contig_pos>
        <strand>+</strand>
        <context>TTTAGATGGC[A/T]MAAAAAAAWT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGGTTCTTCGCAGTGAAAACCAATAATGAGATTTATTCCGTTTAGATGGC</left_flank>
        <right_flank>CAAAAAAATTCAAAAAGGAGCAAGCAATAGAGCAACATTGATGAGTTCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTCAAGAATCTCTAACATTGAAAATTCTAAACATACCTGAATTTCCATCTCATCCATTTCTTGGAACAATCCATGAAGAACCACGAGACAACTCAAAATTGCTCCTAAAGAGCCAATTGTGGAGACAGCGGCCACTGCCTTTACCTCCCACAACATCTTCGGAATCCTCCAGATGACGAATTCTAGGCAAATTCAGAATATGTTCTCTTCCCAACAAAGTACCTCTATTTTATACTGCTACGGGTAACTGGTTATTTTCTTCACTCCTCCCTTTCGGTTTTGTAGAAGAGTGAATTAAAATGCATTTGCAAATTACGGAAGCGAAGGAAAAGAACTTCTTTGTGTCATTTTTCTTCGTTCCACGCTCTCTCTCTCTCTCTCTCTCTCTCAGTTGGTAGGCAAAAAACCATAAAATAAGAAATCCCATTTGATGGATATTCTTTTTGGCGGTTCTTCGCAGTGAAAACCAATAATGAGATTTATTCCGTTTAGATGGCACAAAAAAATTCAAAAAGGAGCAAGCAATAGAGCAACATTGATGAGTTCTAGAGAAGGAAGAAAAATATTAAGATCCAGAAAAATAGGGTCCAAAATTCATTGAACGTTTCAGCTATCTAAAAATCAGTGCCGTTGACTTCCAGCCATTTTTTCTCGGTCCTTTTGAAAGATGTCAAAAATGGTCAATTAATAAAATATTTGTGTTGTTATGATAGGCAAAATGTTGATATTTTTCACAGGAGCCGAGAAAAATTGGCTCAAAGTAAACCACCCTTCAGACCCTTCAATAAGACTAAAATCATCATTGGTTATAACTTATATCAGACGTCCTGAAAACAGAGCTTCCAGGAATCTCAAAACCTTTTTCAACTATTCAAAGACATCCAGTGAAAACAACTCGATTGCTAGAAGTCCAAACCACAGGGGTAATTATTAGCAAGAAAATGAGGAAGACCTTGGAAACCTGAAACCAGTAATTTGCGGTTTAATTGTACTTTATA</canonical>
            <polymorphic>AATTCAAGAATCTCTAACATTGAAAATTCTAAACATACCTGAATTTCCATCTCATCCATTTCTTGGAACAATCCATGAAGAACCACGAGACAACTCAAAATTGCTCCTAAAGAGCCAATTGTGGAGACAGCGGCCACTGCCTTTACCTCCCACAACATCTTCGGAATCCTCCAGATGACGAATTCTAGGCAAATTCAGAATATGTTCTCTTCCCAACAAAGTACCTCTATTTTATACTGCTACGGGTAACTGGTTATTTTCTTCACTCCTCCCTTTCGGTTTTGTAGAAGAGTGAATTAAAATGCATTTGCAAATTACGGAAGCGAAGGAAAAGAACTTCTTTGTGTCATTTTTCTTCGTTCCACGCTCTCTCTCTCTCTCTCTCTCTCTCAGTTGGTAGGCAAAAAACCATAAAATAAGAAATCCCATTTGATGGATATTCTTTTTGGCGGTTCTTCGCAGTGAAAACCAATAATGAGATTTATTCCGTTTAGATGGCWCAAAAAAATTCAAAAAGGAGCAAGCAATAGAGCAACATTGATGAGTTCTAGAGAAGGAAGAAAAATATTAAGATCCAGAAAAATAGGGTCCAAAATTCATTGAACGTTTCAGCTATCTAAAAATCAGTGCCGTTGACTTCCAGCCATTTTTTCTCGGTCCTTTTGAAAGATGTCAAAAATGGTCAATTAATAAAATATTTGTGTTGTTATGATAGGCAAAATGTTGATATTTTTCACAGGAGCCGAGAAAAATTGGCTCAAAGTAAACCACCCTTCAGACCCTTCAATAAGACTAAAATCATCATTGGTTATAACTTATATCAGACGTCCTGAAAACAGAGCTTCCAGGAATCTCAAAACCTTTTTCAACTATTCAAAGACATCCAGTGAAAACAACTCGATTGCTAGAAGTCCAAACCACAGGGGTAATTATTAGCAAGAAAATGAGGAAGACCTTGGAAACCTGAAACCAGTAATTTGCGGTTTAATTGTACTTTATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>129 119 113 100 85 80 74 52 38 36 34 33 31 29 18 16 13</canonical_bands>
                <polymorphic_bands>165 119 113 100 85 80 74 52 38 34 33 31 29 18 16 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTCTTTGTGTCATTTTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>ACCCTATTTTTCTGGATCTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ACTTCTTTGTGTCATTTTTCTTCGTTCCACGCTCTCTCTCTCTCTCTCTCTCTCTCAGTTGGTAGGCAAAAAACCATAAAATAAGAAATCCCATTTGATGGATATTCTTTTTGGCGGTTCTTCGCAGTGAAAACCAATAATGAGATTTATTCCGTTTAGATGGCACAAAAAAATTCAAAAAGGAGCAAGCAATAGAGCAACATTGATGAGTTCTAGAGAAGGAAGAAAAATATTAAGATCCAGAAAAATAGGGT</canonical_amplicon>
		<polymorphic_amplicon>ACTTCTTTGTGTCATTTTTCTTCGTTCCACGCTCTCTCTCTCTCTCTCTCTCTCTCAGTTGGTAGGCAAAAAACCATAAAATAAGAAATCCCATTTGATGGATATTCTTTTTGGCGGTTCTTCGCAGTGAAAACCAATAATGAGATTTATTCCGTTTAGATGGCWCAAAAAAATTCAAAAAGGAGCAAGCAATAGAGCAACATTGATGAGTTCTAGAGAAGGAAGAAAAATATTAAGATCCAGAAAAATAGGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38961</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>274285</contig_pos>
        <strand>+</strand>
        <context>CGTAATTTTT[C/T]GATGAAAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACGCATAAATTCAAAATTGATTTTTTTATGTCAACTTTCCGTAATTTTT</left_flank>
        <right_flank>GATGAAAACTAGCTCGTTTTCTGATAAGACGCAAAATTGCCACGTTACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGGGGGAGGCGTCGCAAAGAAGTAAATAATAAGAGAGTCCGAATGTGAATGACAAGATGCTTATCTGGAAAAATGATGAGGTTCGATAAGATGTTTCTCGTGCTGCCTCATGTAGATGGAGCACCGTTAGATTCATTCTGCAGGATAATCTCGATTTTTTTTCTCAAAAATTGTATATTTTAACCATTTTCGTTGAATTTTATATATACGATTTCGCGTTGAAAACTGGTTTTTTAGCCAAAAGTTTCCGGAATTTCCACAGTTATTCGAGACCTAAATCTTACTTACCACACCTGAAAGCTTTATTTGGTATCATTTATTAATTTATACGCTTTTTTAAACTCAAAAAAACCCCTTTTTGGCTTCGAGAGGACATGCGCTGCTGCAAGGTACGGTGCGCAGCGGTGGTTGCGTACAGTCAAGGAACTATGTTGTCTACCGTAATCTCACGCATAAATTCAAAATTGATTTTTTTATGTCAACTTTCCGTAATTTTTTGATGAAAACTAGCTCGTTTTCTGATAAGACGCAAAATTGCCACGTTACAAGTGTTTGCCATCCTAGAAAATCTGGGAGAAGGCTTATTTTGAGTTTGATTGCCAGCAAGAAATAGGTTAGTTGGGGTTAGAGGGTGAAAAATTCAGAAAATCGCTTGCTTTAAATACTCGTAAATCTTTTACTCGTACTTCTCAAAATTGTACTCTATCAACTTGTTGTCTCTTTTAGCTGGTTACGTACGCTTCAACAAGCTCACAGTTTCCAAATGCAAGCTGTCGAGCCAAAGTTGGTGGGTCCAACACTGCCACCGTCTCTCCAAACACCATCCTCATCGTCGCCACCGTCGCCAGTCCACTTCCAGCAACTCCGCTCGATTCCCTCTTCACCGCAATCATCTCAACAATCATCGGCACCTTCTCAAGCACCACCTGTCGAGTCTCCAGATGGTGGGAAGAGCAAGGAAAATGAGAATGGAGCCGAAAATCAACACCAGCCGCCAC</canonical>
            <polymorphic>TTGGGGGGAGGCGTCGCAAAGAAGTAAATAATAAGAGAGTCCGAATGTGAATGACAAGATGCTTATCTGGAAAAATGATGAGGTTCGATAAGATGTTTCTCGTGCTGCCTCATGTAGATGGAGCACCGTTAGATTCATTCTGCAGGATAATCTCGATTTTTTTTCTCAAAAATTGTATATTTTAACCATTTTCGTTGAATTTTATATATACGATTTCGCGTTGAAAACTGGTTTTTTAGCCAAAAGTTTCCGGAATTTCCACAGTTATTCGAGACCTAAATCTTACTTACCACACCTGAAAGCTTTATTTGGTATCATTTATTAATTTATACGCTTTTTTAAACTCAAAAAAACCCCTTTTTGGCTTCGAGAGGACATGCGCTGCTGCAAGGTACGGTGCGCAGCGGTGGTTGCGTACAGTCAAGGAACTATGTTGTCTACCGTAATCTCACGCATAAATTCAAAATTGATTTTTTTATGTCAACTTTCCGTAATTTTTYGATGAAAACTAGCTCGTTTTCTGATAAGACGCAAAATTGCCACGTTACAAGTGTTTGCCATCCTAGAAAATCTGGGAGAAGGCTTATTTTGAGTTTGATTGCCAGCAAGAAATAGGTTAGTTGGGGTTAGAGGGTGAAAAATTCAGAAAATCGCTTGCTTTAAATACTCGTAAATCTTTTACTCGTACTTCTCAAAATTGTACTCTATCAACTTGTTGTCTCTTTTAGCTGGTTACGTACGCTTCAACAAGCTCACAGTTTCCAAATGCAAGCTGTCGAGCCAAAGTTGGTGGGTCCAACACTGCCACCGTCTCTCCAAACACCATCCTCATCGTCGCCACCGTCGCCAGTCCACTTCCAGCAACTCCGCTCGATTCCCTCTTCACCGCAATCATCTCAACAATCATCGGCACCTTCTCAAGCACCACCTGTCGAGTCTCCAGATGGTGGGAAGAGCAAGGAAAATGAGAATGGAGCCGAAAATCAACACCAGCCGCCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCAAGGAACTATGTTGTCTACC</pcr_primer_p1>
		<pcr_primer_p2>GAGTATTTAAAGCAAGCGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCAAGGAACTATGTTGTCTACCGTAATCTCACGCATAAATTCAAAATTGATTTTTTTATGTCAACTTTCCGTAATTTTTTGATGAAAACTAGCTCGTTTTCTGATAAGACGCAAAATTGCCACGTTACAAGTGTTTGCCATCCTAGAAAATCTGGGAGAAGGCTTATTTTGAGTTTGATTGCCAGCAAGAAATAGGTTAGTTGGGGTTAGAGGGTGAAAAATTCAGAAAATCGCTTGCTTTAAATACTC</canonical_amplicon>
		<polymorphic_amplicon>GTCAAGGAACTATGTTGTCTACCGTAATCTCACGCATAAATTCAAAATTGATTTTTTTATGTCAACTTTCCGTAATTTTTYGATGAAAACTAGCTCGTTTTCTGATAAGACGCAAAATTGCCACGTTACAAGTGTTTGCCATCCTAGAAAATCTGGGAGAAGGCTTATTTTGAGTTTGATTGCCAGCAAGAAATAGGTTAGTTGGGGTTAGAGGGTGAAAAATTCAGAAAATCGCTTGCTTTAAATACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38962</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>317812</contig_pos>
        <strand></strand>
        <context>taatttccaa[G/T]ttaaaaaatA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTTGGACTCATTTTGAAGCCCTCAACATATTCAAAAATTTAATTTCCAA</left_flank>
        <right_flank>TTAAAAAATATACAGTACTTGATTTTGGAATTTTAGAAATTGGAATTTTT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTGCTTTTTTCTCTCTGAAATTCTAGTCATCCCTCTTCTTCCCCCGTTCAATTCCTCCCCCTTTACACCGAGACTTTTCCCCCCGTTTTATGATACTCAGATTTCCAGTTTCATATGTTTAATTAGTTAGCTCCGCCCACCCCCGGTTTACTCCTAAGCTCCGCCCACTTCTATCCAGAACGTATAGAAGCGAAAAAACAGCTTTTCCAGTTTCGCAGCTTGCCAAACCCCAAAAAGACGCTTTGTATTTAAAGTTTTGTCTGGACTAAAAAAAAGAATAAAGATGCATTTGATTTATATCGAAATGGAAAAATACATTTCGCAGACTTATAGAAACTACTAGTTCACAAATTGAACAAAACTTGAGAAATTTACGGTAGTTTGTATTTCGTGGTGGGTCCCACTACGGACGGCCGAAAAATTAAAAGTTTACCAATTCAGACCATGTTTGGACTCATTTTGAAGCCCTCAACATATTCAAAAATTTAATTTCCAAGTTAAAAAATATACAGTACTTGATTTTGGAATTTTAGAAATTGGAATTTTTAACTCTCGATATTTTGGAATCTCGGAGCTTCGGAATCTCAAAATCTTGGAATTGAAACTTCAAAATATACAAATCATCTTTATTCAAAAATATCGTCGAATTAAAACAAAAATTATTCAAGTCTCTCGACTATCCGTGGCTCCTTCTTCTTTTCCCGAATCTCATGACTGGAGAAGACGAATGGAGAGTTGGCAAGAAGTGGAACAAATTTTCCCGATCCTGGAACGGTTTGGAGCTGCCCGTTAGCCCAAACAATGCGGCCTCTGAAAAATTTGAACTTTGAATTTTGAAAAACGTTTAAAGTTTTACCTGGAAATGGTGATTTCAGCAACACCGTGGCATTTGATTCCTTCGAAAATGTTAAAGTCTAGATTCTGTAAAAAAGAATTGTTTAAAATCTCCAACCCAAAAAACAAATTTCAGTCAAATTGATGACCTAACTTATCAAAG</canonical>
            <polymorphic>CTTTTGCTTTTTTCTCTCTGAAATTCTAGTCATCCCTCTTCTTCCCCCGTTCAATTCCTCCCCCTTTACACCGAGACTTTTCCCCCCGTTTTATGATACTCAGATTTCCAGTTTCATATGTTTAATTAGTTAGCTCCGCCCACCCCCGGTTTACTCCTAAGCTCCGCCCACTTCTATCCAGAACGTATAGAAGCGAAAAAACAGCTTTTCCAGTTTCGCAGCTTGCCAAACCCCAAAAAGACGCTTTGTATTTAAAGTTTTGTCTGGACTAAAAAAAAGAATAAAGATGCATTTGATTTATATCGAAATGGAAAAATACATTTCGCAGACTTATAGAAACTACTAGTTCACAAATTGAACAAAACTTGAGAAATTTACGGTAGTTTGTATTTCGTGGTGGGTCCCACTACGGACGGCCGAAAAATTAAAAGTTTACCAATTCAGACCATGTTTGGACTCATTTTGAAGCCCTCAACATATTCAAAAATTTAATTTCCAAKTTAAAAAATATACAGTACTTGATTTTGGAATTTTAGAAATTGGAATTTTTAACTCTCGATATTTTGGAATCTCGGAGCTTCGGAATCTCAAAATCTTGGAATTGAAACTTCAAAATATACAAATCATCTTTATTCAAAAATATCGTCGAATTAAAACAAAAATTATTCAAGTCTCTCGACTATCCGTGGCTCCTTCTTCTTTTCCCGAATCTCATGACTGGAGAAGACGAATGGAGAGTTGGCAAGAAGTGGAACAAATTTTCCCGATCCTGGAACGGTTTGGAGCTGCCCGTTAGCCCAAACAATGCGGCCTCTGAAAAATTTGAACTTTGAATTTTGAAAAACGTTTAAAGTTTTACCTGGAAATGGTGATTTCAGCAACACCGTGGCATTTGATTCCTTCGAAAATGTTAAAGTCTAGATTCTGTAAAAAAGAATTGTTTAAAATCTCCAACCCAAAAAACAAATTTCAGTCAAATTGATGACCTAACTTATCAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTCGCAGACTTATAGAAACT</pcr_primer_p1>
		<pcr_primer_p2>CGATATTTTTGAATAAAGATGATTT</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>CATTTCGCAGACTTATAGAAACTACTAGTTCACAAATTGAACAAAACTTGAGAAATTTACGGTAGTTTGTATTTCGTGGTGGGTCCCACTACGGACGGCCGAAAAATTAAAAGTTTACCAATTCAGACCATGTTTGGACTCATTTTGAAGCCCTCAACATATTCAAAAATTTAATTTCCAAGTTAAAAAATATACAGTACTTGATTTTGGAATTTTAGAAATTGGAATTTTTAACTCTCGATATTTTGGAATCTCGGAGCTTCGGAATCTCAAAATCTTGGAATTGAAACTTCAAAATATACAAATCATCTTTATTCAAAAATATCG</canonical_amplicon>
		<polymorphic_amplicon>CATTTCGCAGACTTATAGAAACTACTAGTTCACAAATTGAACAAAACTTGAGAAATTTACGGTAGTTTGTATTTCGTGGTGGGTCCCACTACGGACGGCCGAAAAATTAAAAGTTTACCAATTCAGACCATGTTTGGACTCATTTTGAAGCCCTCAACATATTCAAAAATTTAATTTCCAAKTTAAAAAATATACAGTACTTGATTTTGGAATTTTAGAAATTGGAATTTTTAACTCTCGATATTTTGGAATCTCGGAGCTTCGGAATCTCAAAATCTTGGAATTGAAACTTCAAAATATACAAATCATCTTTATTCAAAAATATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38963</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>328633</contig_pos>
        <strand>+</strand>
        <context>AAATTCTTAC[C/T]CCGGATCCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCAAGTTCAAGAAGTTCTGAGACCGAATTTGATCTATTTCAAATTCTTAC</left_flank>
        <right_flank>CCGGATCCCTCTCCGCTTTCTGCTTCCACAACGGTATCATCTTGATGTCG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCTTTGAAATTGTGATGACGTGGTAGTCCCAGAGAACGAAACTTCTGGAAAGTGAGAAACTCCACATATTAAATAGGAATTTTCAAGAAACCGGAAAATCAGAAAATCCGAAGTTCAGGAATTCAGAATTTCAAAAAGTCTGAAATTCAGAAAACCCCAAGTTCAAAACTTCAAAAATTAAGGAATTTTTAGATTTTAATATCAGAAATTCAAGAGTTTTGAAAATCCGCCAGATTGAGAAAAATACGAAATTTAGAAACATTTCAATTACATATCCTCTAGAATTCCAAAATTCAGAAATTTCAAATTTTTGGGAACTTTAGCATTCTTAAAAACTCGTGAAATTGGAAACCCGAGAACAGAATTCAAAATATTGAAAATTCCAGAATTCAATAATCCGAAAATTTTAGATTTTTTGAAATTTCAGAACTCAAAAGCTCAAGAATCGCAAGTTCAAGAAGTTCTGAGACCGAATTTGATCTATTTCAAATTCTTACTCCGGATCCCTCTCCGCTTTCTGCTTCCACAACGGTATCATCTTGATGTCGTTCGAAATTAAAACCGCGAAAAAATCGTCCAAATTCGGTTTTAATTTCTCTAAAAGTTTGTACACATTCTCCTCGCAATAACACGATTGATACGGTGCCTCCTCCGCGGATAACATATTATGCCTGCTGGGAAACTTCTGCATATTTTTTTTTGAGAAAATTTTAAAAGGAAAAGAGCATTGAAAAGGGGATGTATCCGCAGCCTAAAAAAAAGAGAAATATCCTGGAAAAGGGGGAAATCGGGAGTATATTATTCAAAGTGAAAACCGGAAGAGAGACGGAAACTGGGAAACAACATATTCAAAACTAATCTATTACGCAAATTTAGCAATAAGAAGAAAAAAAAAACAAAAAAGGATTAAACATCCAATTGAACTTTTGCAGCCGACTGATCCAGATACTTGGAAATTGTGGGTTTCAGCTCTTTGGCAATGAAATTTTCCGTTTGTG</canonical>
            <polymorphic>ATTCTTTGAAATTGTGATGACGTGGTAGTCCCAGAGAACGAAACTTCTGGAAAGTGAGAAACTCCACATATTAAATAGGAATTTTCAAGAAACCGGAAAATCAGAAAATCCGAAGTTCAGGAATTCAGAATTTCAAAAAGTCTGAAATTCAGAAAACCCCAAGTTCAAAACTTCAAAAATTAAGGAATTTTTAGATTTTAATATCAGAAATTCAAGAGTTTTGAAAATCCGCCAGATTGAGAAAAATACGAAATTTAGAAACATTTCAATTACATATCCTCTAGAATTCCAAAATTCAGAAATTTCAAATTTTTGGGAACTTTAGCATTCTTAAAAACTCGTGAAATTGGAAACCCGAGAACAGAATTCAAAATATTGAAAATTCCAGAATTCAATAATCCGAAAATTTTAGATTTTTTGAAATTTCAGAACTCAAAAGCTCAAGAATCGCAAGTTCAAGAAGTTCTGAGACCGAATTTGATCTATTTCAAATTCTTACYCCGGATCCCTCTCCGCTTTCTGCTTCCACAACGGTATCATCTTGATGTCGTTCGAAATTAAAACCGCGAAAAAATCGTCCAAATTCGGTTTTAATTTCTCTAAAAGTTTGTACACATTCTCCTCGCAATAACACGATTGATACGGTGCCTCCTCCGCGGATAACATATTATGCCTGCTGGGAAACTTCTGCATATTTTTTTTTGAGAAAATTTTAAAAGGAAAAGAGCATTGAAAAGGGGATGTATCCGCAGCCTAAAAAAAAGAGAAATATCCTGGAAAAGGGGGAAATCGGGAGTATATTATTCAAAGTGAAAACCGGAAGAGAGACGGAAACTGGGAAACAACATATTCAAAACTAATCTATTACGCAAATTTAGCAATAAGAAGAAAAAAAAAACAAAAAAGGATTAAACATCCAATTGAACTTTTGCAGCCGACTGATCCAGATACTTGGAAATTGTGGGTTTCAGCTCTTTGGCAATGAAATTTTCCGTTTGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCCGGA</site>
                <isoschizomers>
                    <enzyme>AccIII</enzyme>
                    <enzyme>BseAI</enzyme>
                    <enzyme>BsiMI</enzyme>
                    <enzyme>Bsp13I</enzyme>
                    <enzyme>BspEI</enzyme>
                    <enzyme>BspMII</enzyme>
                    <enzyme>Kpn2I</enzyme>
                    <enzyme>MroI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>408 316 184 92</canonical_bands>
                <polymorphic_bands>724 184 92</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>250 153 95 68 59 57 56 47 45 44 40 39 32 15</canonical_bands>
                <polymorphic_bands>250 153 95 84 68 59 57 56 47 45 39 32 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAAATTTTTGGGAACTTTAG</pcr_primer_p1>
		<pcr_primer_p2>CGAACGACATCAAGATGATAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTCAAATTTTTGGGAACTTTAGCATTCTTAAAAACTCGTGAAATTGGAAACCCGAGAACAGAATTCAAAATATTGAAAATTCCAGAATTCAATAATCCGAAAATTTTAGATTTTTTGAAATTTCAGAACTCAAAAGCTCAAGAATCGCAAGTTCAAGAAGTTCTGAGACCGAATTTGATCTATTTCAAATTCTTACTCCGGATCCCTCTCCGCTTTCTGCTTCCACAACGGTATCATCTTGATGTCGTTCG</canonical_amplicon>
		<polymorphic_amplicon>TTCAAATTTTTGGGAACTTTAGCATTCTTAAAAACTCGTGAAATTGGAAACCCGAGAACAGAATTCAAAATATTGAAAATTCCAGAATTCAATAATCCGAAAATTTTAGATTTTTTGAAATTTCAGAACTCAAAAGCTCAAGAATCGCAAGTTCAAGAAGTTCTGAGACCGAATTTGATCTATTTCAAATTCTTACYCCGGATCCCTCTCCGCTTTCTGCTTCCACAACGGTATCATCTTGATGTCGTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38964</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>328889</contig_pos>
        <strand>+</strand>
        <context>TCCGCAGCCT[A/G]AAAAAAAGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAATTTTAAAAGGAAAAGAGCATTGAAAAGGGGATGTATCCGCAGCCT</left_flank>
        <right_flank>AAAAAAAGAGAAATATCCTGGAAAAGGGGGAAATCGGGAGTATATTATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAACATTTCAATTACATATCCTCTAGAATTCCAAAATTCAGAAATTTCAAATTTTTGGGAACTTTAGCATTCTTAAAAACTCGTGAAATTGGAAACCCGAGAACAGAATTCAAAATATTGAAAATTCCAGAATTCAATAATCCGAAAATTTTAGATTTTTTGAAATTTCAGAACTCAAAAGCTCAAGAATCGCAAGTTCAAGAAGTTCTGAGACCGAATTTGATCTATTTCAAATTCTTACTCCGGATCCCTCTCCGCTTTCTGCTTCCACAACGGTATCATCTTGATGTCGTTCGAAATTAAAACCGCGAAAAAATCGTCCAAATTCGGTTTTAATTTCTCTAAAAGTTTGTACACATTCTCCTCGCAATAACACGATTGATACGGTGCCTCCTCCGCGGATAACATATTATGCCTGCTGGGAAACTTCTGCATATTTTTTTTTGAGAAAATTTTAAAAGGAAAAGAGCATTGAAAAGGGGATGTATCCGCAGCCTAAAAAAAAGAGAAATATCCTGGAAAAGGGGGAAATCGGGAGTATATTATTCAAAGTGAAAACCGGAAGAGAGACGGAAACTGGGAAACAACATATTCAAAACTAATCTATTACGCAAATTTAGCAATAAGAAGAAAAAAAAAACAAAAAAGGATTAAACATCCAATTGAACTTTTGCAGCCGACTGATCCAGATACTTGGAAATTGTGGGTTTCAGCTCTTTGGCAATGAAATTTTCCGTTTGTGAAACGCATCGTCCGGTGAAGTTGATTGGATTGTTGACGAGGCCGACGATACGATCGCGGACCTAGAAAATGCTCTTTTCCACTATTCTAGATTTTCATTTTCAGGTCATGACCTAGATTTGTATTTTGAGGTTATGACCTAGTTTTCGTTTTTAGATCATGACCTAGATTTGGCTTTTTAGGTCATGAACTAGATGTGGATTTTTAGGTCATAAACTAGATTTTCATTTATTGAAGGTTTTTTTTCAAAACTCACC</canonical>
            <polymorphic>AGAAACATTTCAATTACATATCCTCTAGAATTCCAAAATTCAGAAATTTCAAATTTTTGGGAACTTTAGCATTCTTAAAAACTCGTGAAATTGGAAACCCGAGAACAGAATTCAAAATATTGAAAATTCCAGAATTCAATAATCCGAAAATTTTAGATTTTTTGAAATTTCAGAACTCAAAAGCTCAAGAATCGCAAGTTCAAGAAGTTCTGAGACCGAATTTGATCTATTTCAAATTCTTACTCCGGATCCCTCTCCGCTTTCTGCTTCCACAACGGTATCATCTTGATGTCGTTCGAAATTAAAACCGCGAAAAAATCGTCCAAATTCGGTTTTAATTTCTCTAAAAGTTTGTACACATTCTCCTCGCAATAACACGATTGATACGGTGCCTCCTCCGCGGATAACATATTATGCCTGCTGGGAAACTTCTGCATATTTTTTTTTGAGAAAATTTTAAAAGGAAAAGAGCATTGAAAAGGGGATGTATCCGCAGCCTRAAAAAAAGAGAAATATCCTGGAAAAGGGGGAAATCGGGAGTATATTATTCAAAGTGAAAACCGGAAGAGAGACGGAAACTGGGAAACAACATATTCAAAACTAATCTATTACGCAAATTTAGCAATAAGAAGAAAAAAAAAACAAAAAAGGATTAAACATCCAATTGAACTTTTGCAGCCGACTGATCCAGATACTTGGAAATTGTGGGTTTCAGCTCTTTGGCAATGAAATTTTCCGTTTGTGAAACGCATCGTCCGGTGAAGTTGATTGGATTGTTGACGAGGCCGACGATACGATCGCGGACCTAGAAAATGCTCTTTTCCACTATTCTAGATTTTCATTTTCAGGTCATGACCTAGATTTGTATTTTGAGGTTATGACCTAGTTTTCGTTTTTAGATCATGACCTAGATTTGGCTTTTTAGGTCATGAACTAGATGTGGATTTTTAGGTCATAAACTAGATTTTCATTTATTGAAGGTTTTTTTTCAAAACTCACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAGTTTGTACACATTCTCCTC</pcr_primer_p1>
		<pcr_primer_p2>GAATATGTTGTTTCCCAGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAAGTTTGTACACATTCTCCTCGCAATAACACGATTGATACGGTGCCTCCTCCGCGGATAACATATTATGCCTGCTGGGAAACTTCTGCATATTTTTTTTTGAGAAAATTTTAAAAGGAAAAGAGCATTGAAAAGGGGATGTATCCGCAGCCTAAAAAAAAGAGAAATATCCTGGAAAAGGGGGAAATCGGGAGTATATTATTCAAAGTGAAAACCGGAAGAGAGACGGAAACTGGGAAACAACATATTC</canonical_amplicon>
		<polymorphic_amplicon>AAAAGTTTGTACACATTCTCCTCGCAATAACACGATTGATACGGTGCCTCCTCCGCGGATAACATATTATGCCTGCTGGGAAACTTCTGCATATTTTTTTTTGAGAAAATTTTAAAAGGAAAAGAGCATTGAAAAGGGGATGTATCCGCAGCCTRAAAAAAAGAGAAATATCCTGGAAAAGGGGGAAATCGGGAGTATATTATTCAAAGTGAAAACCGGAAGAGAGACGGAAACTGGGAAACAACATATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38965</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>355484</contig_pos>
        <strand></strand>
        <context>TTTTGGATCG[A/G]TTTTGTAAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTCGATATTTCATAAAAATTTCAAGATATTCTTTCAATTTTGGATCG</left_flank>
        <right_flank>TTTTGTAAGGGTCTAAAGTTGATAAAAAAAAGGCTCTAACTTCAGGTCGA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGATGTGCTCTTTCGCTTCGATGTTTGTGTCCTGAAACAAGAATTTTAGCATTTCTAAAATCGCGTGAAAACATTAAAACTCACTGACGCAGGTTTTGCAATCATTCTCGAATGATGAGGGGATCTCGCTCGAACCGATGGCTTCCGAAGGTGGTGTTGAAGATCACCAAGAGCACGGATCGCCTAAAAAATAAGAATCTAATTTTTGTTTAACTAAAATGAACCTAGTTTTATTGGAATATTTAGAAAAATCAAAAAAAACTTCAACCTAATTTTTTTGAAGCTTTAAAATTTTCTCTATTCATATAAAATGCAAAAATGCGCATACCGTAAACAGTCTAGCAGCAGGCTCCCGAAACTATTTTGGAAGACCCATTGACTTTGAGAAAAATACAACCTTTATAAAAGGCACTTATGTGATCTTCGGAAAAAATTCAGAAGATGTTAAATTTCGATATTTCATAAAAATTTCAAGATATTCTTTCAATTTTGGATCGATTTTGTAAGGGTCTAAAGTTGATAAAAAAAAGGCTCTAACTTCAGGTCGATTTATCTGTGTAGCTTCCTGTGATAACTATCAAAAAGTGATCACCTGGCAAGGACTCATAAGGAGATTGTGCGAACATTAAAGACTGTACACCGTCACGTCAGACTGCATACCGCGACTTCAAAAAAACTCCGAAAAACTTACATTTTCAGTCTCCTTGGGAATACTTCTTTGATTGATACTAGTAAACGAATGAATCGTTGCTTGATAATCATCTCCTTCGGAACTTCCTGATAGGAACACAGTCTTTTTGCGTGGCATCGGAGGAGATACTGGACTCTCTGCATTCATGAATAATCGTCTACACTCCGCCTCCTCATCATCCTCTTCGTTATTCTCTGCTTCCTGACAAGCCACCTCCAGAATCTTATCCAGATCATGCATCACTTCTCGAAGTTTCTCAGGCGTACTCCCGAATTTCTGAGCCACCAGTGATACCAAATCTTTAACT</canonical>
            <polymorphic>TGTGATGTGCTCTTTCGCTTCGATGTTTGTGTCCTGAAACAAGAATTTTAGCATTTCTAAAATCGCGTGAAAACATTAAAACTCACTGACGCAGGTTTTGCAATCATTCTCGAATGATGAGGGGATCTCGCTCGAACCGATGGCTTCCGAAGGTGGTGTTGAAGATCACCAAGAGCACGGATCGCCTAAAAAATAAGAATCTAATTTTTGTTTAACTAAAATGAACCTAGTTTTATTGGAATATTTAGAAAAATCAAAAAAAACTTCAACCTAATTTTTTTGAAGCTTTAAAATTTTCTCTATTCATATAAAATGCAAAAATGCGCATACCGTAAACAGTCTAGCAGCAGGCTCCCGAAACTATTTTGGAAGACCCATTGACTTTGAGAAAAATACAACCTTTATAAAAGGCACTTATGTGATCTTCGGAAAAAATTCAGAAGATGTTAAATTTCGATATTTCATAAAAATTTCAAGATATTCTTTCAATTTTGGATCGRTTTTGTAAGGGTCTAAAGTTGATAAAAAAAAGGCTCTAACTTCAGGTCGATTTATCTGTGTAGCTTCCTGTGATAACTATCAAAAAGTGATCACCTGGCAAGGACTCATAAGGAGATTGTGCGAACATTAAAGACTGTACACCGTCACGTCAGACTGCATACCGCGACTTCAAAAAAACTCCGAAAAACTTACATTTTCAGTCTCCTTGGGAATACTTCTTTGATTGATACTAGTAAACGAATGAATCGTTGCTTGATAATCATCTCCTTCGGAACTTCCTGATAGGAACACAGTCTTTTTGCGTGGCATCGGAGGAGATACTGGACTCTCTGCATTCATGAATAATCGTCTACACTCCGCCTCCTCATCATCCTCTTCGTTATTCTCTGCTTCCTGACAAGCCACCTCCAGAATCTTATCCAGATCATGCATCACTTCTCGAAGTTTCTCAGGCGTACTCCCGAATTTCTGAGCCACCAGTGATACCAAATCTTTAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>393 322 90 59 50 43 22 21</canonical_bands>
                <polymorphic_bands>393 322 93 90 59 22 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAACCTTTATAAAAGGCACTTA</pcr_primer_p1>
		<pcr_primer_p2>ACGGTGTACAGTCTTTAATGTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACAACCTTTATAAAAGGCACTTATGTGATCTTCGGAAAAAATTCAGAAGATGTTAAATTTCGATATTTCATAAAAATTTCAAGATATTCTTTCAATTTTGGATCGATTTTGTAAGGGTCTAAAGTTGATAAAAAAAAGGCTCTAACTTCAGGTCGATTTATCTGTGTAGCTTCCTGTGATAACTATCAAAAAGTGATCACCTGGCAAGGACTCATAAGGAGATTGTGCGAACATTAAAGACTGTACACCGT</canonical_amplicon>
		<polymorphic_amplicon>ACAACCTTTATAAAAGGCACTTATGTGATCTTCGGAAAAAATTCAGAAGATGTTAAATTTCGATATTTCATAAAAATTTCAAGATATTCTTTCAATTTTGGATCGRTTTTGTAAGGGTCTAAAGTTGATAAAAAAAAGGCTCTAACTTCAGGTCGATTTATCTGTGTAGCTTCCTGTGATAACTATCAAAAAGTGATCACCTGGCAAGGACTCATAAGGAGATTGTGCGAACATTAAAGACTGTACACCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38966</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>355496</contig_pos>
        <strand></strand>
        <context>TTTGTAAGGG[T/C]CTAAAGTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCATAAAAATTTCAAGATATTCTTTCAATTTTGGATCGATTTTGTAAGGG</left_flank>
        <right_flank>CTAAAGTTGATAAAAAAAAGGCTCTAACTTCAGGTCGATTTATCTGTGTA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGCTTCGATGTTTGTGTCCTGAAACAAGAATTTTAGCATTTCTAAAATCGCGTGAAAACATTAAAACTCACTGACGCAGGTTTTGCAATCATTCTCGAATGATGAGGGGATCTCGCTCGAACCGATGGCTTCCGAAGGTGGTGTTGAAGATCACCAAGAGCACGGATCGCCTAAAAAATAAGAATCTAATTTTTGTTTAACTAAAATGAACCTAGTTTTATTGGAATATTTAGAAAAATCAAAAAAAACTTCAACCTAATTTTTTTGAAGCTTTAAAATTTTCTCTATTCATATAAAATGCAAAAATGCGCATACCGTAAACAGTCTAGCAGCAGGCTCCCGAAACTATTTTGGAAGACCCATTGACTTTGAGAAAAATACAACCTTTATAAAAGGCACTTATGTGATCTTCGGAAAAAATTCAGAAGATGTTAAATTTCGATATTTCATAAAAATTTCAAGATATTCTTTCAATTTTGGATCGATTTTGTAAGGGTCTAAAGTTGATAAAAAAAAGGCTCTAACTTCAGGTCGATTTATCTGTGTAGCTTCCTGTGATAACTATCAAAAAGTGATCACCTGGCAAGGACTCATAAGGAGATTGTGCGAACATTAAAGACTGTACACCGTCACGTCAGACTGCATACCGCGACTTCAAAAAAACTCCGAAAAACTTACATTTTCAGTCTCCTTGGGAATACTTCTTTGATTGATACTAGTAAACGAATGAATCGTTGCTTGATAATCATCTCCTTCGGAACTTCCTGATAGGAACACAGTCTTTTTGCGTGGCATCGGAGGAGATACTGGACTCTCTGCATTCATGAATAATCGTCTACACTCCGCCTCCTCATCATCCTCTTCGTTATTCTCTGCTTCCTGACAAGCCACCTCCAGAATCTTATCCAGATCATGCATCACTTCTCGAAGTTTCTCAGGCGTACTCCCGAATTTCTGAGCCACCAGTGATACCAAATCTTTAACTGTCATCATTTGT</canonical>
            <polymorphic>TTTCGCTTCGATGTTTGTGTCCTGAAACAAGAATTTTAGCATTTCTAAAATCGCGTGAAAACATTAAAACTCACTGACGCAGGTTTTGCAATCATTCTCGAATGATGAGGGGATCTCGCTCGAACCGATGGCTTCCGAAGGTGGTGTTGAAGATCACCAAGAGCACGGATCGCCTAAAAAATAAGAATCTAATTTTTGTTTAACTAAAATGAACCTAGTTTTATTGGAATATTTAGAAAAATCAAAAAAAACTTCAACCTAATTTTTTTGAAGCTTTAAAATTTTCTCTATTCATATAAAATGCAAAAATGCGCATACCGTAAACAGTCTAGCAGCAGGCTCCCGAAACTATTTTGGAAGACCCATTGACTTTGAGAAAAATACAACCTTTATAAAAGGCACTTATGTGATCTTCGGAAAAAATTCAGAAGATGTTAAATTTCGATATTTCATAAAAATTTCAAGATATTCTTTCAATTTTGGATCGATTTTGTAAGGGYCTAAAGTTGATAAAAAAAAGGCTCTAACTTCAGGTCGATTTATCTGTGTAGCTTCCTGTGATAACTATCAAAAAGTGATCACCTGGCAAGGACTCATAAGGAGATTGTGCGAACATTAAAGACTGTACACCGTCACGTCAGACTGCATACCGCGACTTCAAAAAAACTCCGAAAAACTTACATTTTCAGTCTCCTTGGGAATACTTCTTTGATTGATACTAGTAAACGAATGAATCGTTGCTTGATAATCATCTCCTTCGGAACTTCCTGATAGGAACACAGTCTTTTTGCGTGGCATCGGAGGAGATACTGGACTCTCTGCATTCATGAATAATCGTCTACACTCCGCCTCCTCATCATCCTCTTCGTTATTCTCTGCTTCCTGACAAGCCACCTCCAGAATCTTATCCAGATCATGCATCACTTCTCGAAGTTTCTCAGGCGTACTCCCGAATTTCTGAGCCACCAGTGATACCAAATCTTTAACTGTCATCATTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAACCTTTATAAAAGGCACTTA</pcr_primer_p1>
		<pcr_primer_p2>ACGGTGTACAGTCTTTAATGTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACAACCTTTATAAAAGGCACTTATGTGATCTTCGGAAAAAATTCAGAAGATGTTAAATTTCGATATTTCATAAAAATTTCAAGATATTCTTTCAATTTTGGATCGATTTTGTAAGGGTCTAAAGTTGATAAAAAAAAGGCTCTAACTTCAGGTCGATTTATCTGTGTAGCTTCCTGTGATAACTATCAAAAAGTGATCACCTGGCAAGGACTCATAAGGAGATTGTGCGAACATTAAAGACTGTACACCGT</canonical_amplicon>
		<polymorphic_amplicon>ACAACCTTTATAAAAGGCACTTATGTGATCTTCGGAAAAAATTCAGAAGATGTTAAATTTCGATATTTCATAAAAATTTCAAGATATTCTTTCAATTTTGGATCGATTTTGTAAGGGYCTAAAGTTGATAAAAAAAAGGCTCTAACTTCAGGTCGATTTATCTGTGTAGCTTCCTGTGATAACTATCAAAAAGTGATCACCTGGCAAGGACTCATAAGGAGATTGTGCGAACATTAAAGACTGTACACCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38967</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>355560</contig_pos>
        <strand></strand>
        <context>TCCTGTGATA[A/G]CTATCAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAAGGCTCTAACTTCAGGTCGATTTATCTGTGTAGCTTCCTGTGATA</left_flank>
        <right_flank>CTATCAAAAAGTGATCACCTGGCAAGGACTCATAAGGAGATTGTGCGAAC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAACTCACTGACGCAGGTTTTGCAATCATTCTCGAATGATGAGGGGATCTCGCTCGAACCGATGGCTTCCGAAGGTGGTGTTGAAGATCACCAAGAGCACGGATCGCCTAAAAAATAAGAATCTAATTTTTGTTTAACTAAAATGAACCTAGTTTTATTGGAATATTTAGAAAAATCAAAAAAAACTTCAACCTAATTTTTTTGAAGCTTTAAAATTTTCTCTATTCATATAAAATGCAAAAATGCGCATACCGTAAACAGTCTAGCAGCAGGCTCCCGAAACTATTTTGGAAGACCCATTGACTTTGAGAAAAATACAACCTTTATAAAAGGCACTTATGTGATCTTCGGAAAAAATTCAGAAGATGTTAAATTTCGATATTTCATAAAAATTTCAAGATATTCTTTCAATTTTGGATCGATTTTGTAAGGGTCTAAAGTTGATAAAAAAAAGGCTCTAACTTCAGGTCGATTTATCTGTGTAGCTTCCTGTGATAACTATCAAAAAGTGATCACCTGGCAAGGACTCATAAGGAGATTGTGCGAACATTAAAGACTGTACACCGTCACGTCAGACTGCATACCGCGACTTCAAAAAAACTCCGAAAAACTTACATTTTCAGTCTCCTTGGGAATACTTCTTTGATTGATACTAGTAAACGAATGAATCGTTGCTTGATAATCATCTCCTTCGGAACTTCCTGATAGGAACACAGTCTTTTTGCGTGGCATCGGAGGAGATACTGGACTCTCTGCATTCATGAATAATCGTCTACACTCCGCCTCCTCATCATCCTCTTCGTTATTCTCTGCTTCCTGACAAGCCACCTCCAGAATCTTATCCAGATCATGCATCACTTCTCGAAGTTTCTCAGGCGTACTCCCGAATTTCTGAGCCACCAGTGATACCAAATCTTTAACTGTCATCATTTGTCCTCCATACCAAATTTCAGCCTCTTCTGAGTCTGAAACCTTCCGACCGTAGTAATGAATCCACA</canonical>
            <polymorphic>TAAAACTCACTGACGCAGGTTTTGCAATCATTCTCGAATGATGAGGGGATCTCGCTCGAACCGATGGCTTCCGAAGGTGGTGTTGAAGATCACCAAGAGCACGGATCGCCTAAAAAATAAGAATCTAATTTTTGTTTAACTAAAATGAACCTAGTTTTATTGGAATATTTAGAAAAATCAAAAAAAACTTCAACCTAATTTTTTTGAAGCTTTAAAATTTTCTCTATTCATATAAAATGCAAAAATGCGCATACCGTAAACAGTCTAGCAGCAGGCTCCCGAAACTATTTTGGAAGACCCATTGACTTTGAGAAAAATACAACCTTTATAAAAGGCACTTATGTGATCTTCGGAAAAAATTCAGAAGATGTTAAATTTCGATATTTCATAAAAATTTCAAGATATTCTTTCAATTTTGGATCGATTTTGTAAGGGTCTAAAGTTGATAAAAAAAAGGCTCTAACTTCAGGTCGATTTATCTGTGTAGCTTCCTGTGATARCTATCAAAAAGTGATCACCTGGCAAGGACTCATAAGGAGATTGTGCGAACATTAAAGACTGTACACCGTCACGTCAGACTGCATACCGCGACTTCAAAAAAACTCCGAAAAACTTACATTTTCAGTCTCCTTGGGAATACTTCTTTGATTGATACTAGTAAACGAATGAATCGTTGCTTGATAATCATCTCCTTCGGAACTTCCTGATAGGAACACAGTCTTTTTGCGTGGCATCGGAGGAGATACTGGACTCTCTGCATTCATGAATAATCGTCTACACTCCGCCTCCTCATCATCCTCTTCGTTATTCTCTGCTTCCTGACAAGCCACCTCCAGAATCTTATCCAGATCATGCATCACTTCTCGAAGTTTCTCAGGCGTACTCCCGAATTTCTGAGCCACCAGTGATACCAAATCTTTAACTGTCATCATTTGTCCTCCATACCAAATTTCAGCCTCTTCTGAGTCTGAAACCTTCCGACCGTAGTAATGAATCCACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAACCTTTATAAAAGGCACTTA</pcr_primer_p1>
		<pcr_primer_p2>ACGGTGTACAGTCTTTAATGTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACAACCTTTATAAAAGGCACTTATGTGATCTTCGGAAAAAATTCAGAAGATGTTAAATTTCGATATTTCATAAAAATTTCAAGATATTCTTTCAATTTTGGATCGATTTTGTAAGGGTCTAAAGTTGATAAAAAAAAGGCTCTAACTTCAGGTCGATTTATCTGTGTAGCTTCCTGTGATAACTATCAAAAAGTGATCACCTGGCAAGGACTCATAAGGAGATTGTGCGAACATTAAAGACTGTACACCGT</canonical_amplicon>
		<polymorphic_amplicon>ACAACCTTTATAAAAGGCACTTATGTGATCTTCGGAAAAAATTCAGAAGATGTTAAATTTCGATATTTCATAAAAATTTCAAGATATTCTTTCAATTTTGGATCGATTTTGTAAGGGTCTAAAGTTGATAAAAAAAAGGCTCTAACTTCAGGTCGATTTATCTGTGTAGCTTCCTGTGATARCTATCAAAAAGTGATCACCTGGCAAGGACTCATAAGGAGATTGTGCGAACATTAAAGACTGTACACCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38968</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>355687</contig_pos>
        <strand></strand>
        <context>CATTTTCAGT[C/T]TCCTTGGGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACTGCATACCGCGACTTCAAAAAAACTCCGAAAAACTTACATTTTCAGT</left_flank>
        <right_flank>TCCTTGGGAATACTTCTTTGATTGATACTAGTAAACGAATGAATCGTTGC</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTGTTTAACTAAAATGAACCTAGTTTTATTGGAATATTTAGAAAAATCAAAAAAAACTTCAACCTAATTTTTTTGAAGCTTTAAAATTTTCTCTATTCATATAAAATGCAAAAATGCGCATACCGTAAACAGTCTAGCAGCAGGCTCCCGAAACTATTTTGGAAGACCCATTGACTTTGAGAAAAATACAACCTTTATAAAAGGCACTTATGTGATCTTCGGAAAAAATTCAGAAGATGTTAAATTTCGATATTTCATAAAAATTTCAAGATATTCTTTCAATTTTGGATCGATTTTGTAAGGGTCTAAAGTTGATAAAAAAAAGGCTCTAACTTCAGGTCGATTTATCTGTGTAGCTTCCTGTGATAACTATCAAAAAGTGATCACCTGGCAAGGACTCATAAGGAGATTGTGCGAACATTAAAGACTGTACACCGTCACGTCAGACTGCATACCGCGACTTCAAAAAAACTCCGAAAAACTTACATTTTCAGTCTCCTTGGGAATACTTCTTTGATTGATACTAGTAAACGAATGAATCGTTGCTTGATAATCATCTCCTTCGGAACTTCCTGATAGGAACACAGTCTTTTTGCGTGGCATCGGAGGAGATACTGGACTCTCTGCATTCATGAATAATCGTCTACACTCCGCCTCCTCATCATCCTCTTCGTTATTCTCTGCTTCCTGACAAGCCACCTCCAGAATCTTATCCAGATCATGCATCACTTCTCGAAGTTTCTCAGGCGTACTCCCGAATTTCTGAGCCACCAGTGATACCAAATCTTTAACTGTCATCATTTGTCCTCCATACCAAATTTCAGCCTCTTCTGAGTCTGAAACCTTCCGACCGTAGTAATGAATCCACATGATTCCTCGTTGTAGAGAGGAGAAGAAAATCAGCATTGTGGCGACTCCAGTGCAGAGGTAGATCATAACAACGGCATATTGAAAAGGGCCTTCTGGAGTTGGGGAATAATCTCCGTAGCCGATTGT</canonical>
            <polymorphic>ATTTTTGTTTAACTAAAATGAACCTAGTTTTATTGGAATATTTAGAAAAATCAAAAAAAACTTCAACCTAATTTTTTTGAAGCTTTAAAATTTTCTCTATTCATATAAAATGCAAAAATGCGCATACCGTAAACAGTCTAGCAGCAGGCTCCCGAAACTATTTTGGAAGACCCATTGACTTTGAGAAAAATACAACCTTTATAAAAGGCACTTATGTGATCTTCGGAAAAAATTCAGAAGATGTTAAATTTCGATATTTCATAAAAATTTCAAGATATTCTTTCAATTTTGGATCGATTTTGTAAGGGTCTAAAGTTGATAAAAAAAAGGCTCTAACTTCAGGTCGATTTATCTGTGTAGCTTCCTGTGATAACTATCAAAAAGTGATCACCTGGCAAGGACTCATAAGGAGATTGTGCGAACATTAAAGACTGTACACCGTCACGTCAGACTGCATACCGCGACTTCAAAAAAACTCCGAAAAACTTACATTTTCAGTYTCCTTGGGAATACTTCTTTGATTGATACTAGTAAACGAATGAATCGTTGCTTGATAATCATCTCCTTCGGAACTTCCTGATAGGAACACAGTCTTTTTGCGTGGCATCGGAGGAGATACTGGACTCTCTGCATTCATGAATAATCGTCTACACTCCGCCTCCTCATCATCCTCTTCGTTATTCTCTGCTTCCTGACAAGCCACCTCCAGAATCTTATCCAGATCATGCATCACTTCTCGAAGTTTCTCAGGCGTACTCCCGAATTTCTGAGCCACCAGTGATACCAAATCTTTAACTGTCATCATTTGTCCTCCATACCAAATTTCAGCCTCTTCTGAGTCTGAAACCTTCCGACCGTAGTAATGAATCCACATGATTCCTCGTTGTAGAGAGGAGAAGAAAATCAGCATTGTGGCGACTCCAGTGCAGAGGTAGATCATAACAACGGCATATTGAAAAGGGCCTTCTGGAGTTGGGGAATAATCTCCGTAGCCGATTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATCTGTGTAGCTTCCTGTGAT</pcr_primer_p1>
		<pcr_primer_p2>CAAAAAGACTGTGTTCCTATCAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTATCTGTGTAGCTTCCTGTGATAACTATCAAAAAGTGATCACCTGGCAAGGACTCATAAGGAGATTGTGCGAACATTAAAGACTGTACACCGTCACGTCAGACTGCATACCGCGACTTCAAAAAAACTCCGAAAAACTTACATTTTCAGTCTCCTTGGGAATACTTCTTTGATTGATACTAGTAAACGAATGAATCGTTGCTTGATAATCATCTCCTTCGGAACTTCCTGATAGGAACACAGTCTTTTTG</canonical_amplicon>
		<polymorphic_amplicon>TTATCTGTGTAGCTTCCTGTGATAACTATCAAAAAGTGATCACCTGGCAAGGACTCATAAGGAGATTGTGCGAACATTAAAGACTGTACACCGTCACGTCAGACTGCATACCGCGACTTCAAAAAAACTCCGAAAAACTTACATTTTCAGTYTCCTTGGGAATACTTCTTTGATTGATACTAGTAAACGAATGAATCGTTGCTTGATAATCATCTCCTTCGGAACTTCCTGATAGGAACACAGTCTTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38969</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>402270</contig_pos>
        <strand>+</strand>
        <context>GAAATTTGGA[A/C]TTTTTTTGGC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGACCAATTTTTATTAATTCCAAATGTTTTGGTTATGCGTGAAATTTGGA</left_flank>
        <right_flank>TTTTTTTGGCATTTTTTGCACTTGTAAAGTTTTTTGTTTTAATGGGATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCCCTGCCCGGAAAGGAATATTTGAAAGCTTCGAATTTCGCAAGTTTCCCAAAGATATGTCATTTCTATAACTATGTAAAAACCTGATCCCTATGATCCACAACTTTCTGCCAAGACAATTTCTATGGTCCCCGGAGAATCTCTGGTTTACGTCACATTGTTTTTCAGCCTGTTGTTTAGAGATCACCAAAATTATGAAGGAACCAAAAACTAGAAGATCTCTTATTTTTCAATAAATGCAGACATCAAAGTACTCATAGGAACAAAACGAGACAAATTAATATCCTCTTTCTTTTTGAAATTCTTCGAAATCCAATTTTTCACAGATCAACGCTTTTTATTCGTAATGGACTACGTGCGTTTCACATGAAACGGATATTGGATATACTTAAAGGTTTTCTGAAAAGTTCCTTTTTTCAGAAAGTCTGAAAATTTGGATTTTGAACTCTGACCAATTTTTATTAATTCCAAATGTTTTGGTTATGCGTGAAATTTGGATTTTTTTTGGCATTTTTTGCACTTGTAAAGTTTTTTGTTTTAATGGGATTTCTGAATTTGAGAGACTCCAAAAGCACAAAAAATTAAAAAAGAGCACCTGATATTTTCTAACTTTTTGTTTCCTTCCACCACAATTTTATCATCAATTATGCAGACATCACAACTAATTAGGTGGCCTGGGGGGAGTCAGTTGACGGTCACGAGCTCTAATAACCTCATATTTTTCCAAATACTCGCTTTTTAGAATTCTGAGATTCTGATAGTGAGATTCTAAAAATCTAGTAGCGCGCTTTTCGGTAACTTAATTTCCGATTCTTCCGAATTTCTGAGTTTCCATATTTTTTAGAATTTTCAGGGATTTTCAGAATGCAGGAGTTTTCAGACAATAGTCAATTTTGCAATAAATTGAAAAAACTCCGGTTTTTATAGCTTTTGTAACTTTTTTATTATGTACTGCTAATGTTCTAAATTAGCAAATCTCGAATTTTTGATTTACTACCA</canonical>
            <polymorphic>AGCCCTGCCCGGAAAGGAATATTTGAAAGCTTCGAATTTCGCAAGTTTCCCAAAGATATGTCATTTCTATAACTATGTAAAAACCTGATCCCTATGATCCACAACTTTCTGCCAAGACAATTTCTATGGTCCCCGGAGAATCTCTGGTTTACGTCACATTGTTTTTCAGCCTGTTGTTTAGAGATCACCAAAATTATGAAGGAACCAAAAACTAGAAGATCTCTTATTTTTCAATAAATGCAGACATCAAAGTACTCATAGGAACAAAACGAGACAAATTAATATCCTCTTTCTTTTTGAAATTCTTCGAAATCCAATTTTTCACAGATCAACGCTTTTTATTCGTAATGGACTACGTGCGTTTCACATGAAACGGATATTGGATATACTTAAAGGTTTTCTGAAAAGTTCCTTTTTTCAGAAAGTCTGAAAATTTGGATTTTGAACTCTGACCAATTTTTATTAATTCCAAATGTTTTGGTTATGCGTGAAATTTGGAMTTTTTTTGGCATTTTTTGCACTTGTAAAGTTTTTTGTTTTAATGGGATTTCTGAATTTGAGAGACTCCAAAAGCACAAAAAATTAAAAAAGAGCACCTGATATTTTCTAACTTTTTGTTTCCTTCCACCACAATTTTATCATCAATTATGCAGACATCACAACTAATTAGGTGGCCTGGGGGGAGTCAGTTGACGGTCACGAGCTCTAATAACCTCATATTTTTCCAAATACTCGCTTTTTAGAATTCTGAGATTCTGATAGTGAGATTCTAAAAATCTAGTAGCGCGCTTTTCGGTAACTTAATTTCCGATTCTTCCGAATTTCTGAGTTTCCATATTTTTTAGAATTTTCAGGGATTTTCAGAATGCAGGAGTTTTCAGACAATAGTCAATTTTGCAATAAATTGAAAAAACTCCGGTTTTTATAGCTTTTGTAACTTTTTTATTATGTACTGCTAATGTTCTAAATTAGCAAATCTCGAATTTTTGATTTACTACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCCAATTTTTCACAGATCAAC</pcr_primer_p1>
		<pcr_primer_p2>AAATTCAGAAATCCCATTAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATCCAATTTTTCACAGATCAACGCTTTTTATTCGTAATGGACTACGTGCGTTTCACATGAAACGGATATTGGATATACTTAAAGGTTTTCTGAAAAGTTCCTTTTTTCAGAAAGTCTGAAAATTTGGATTTTGAACTCTGACCAATTTTTATTAATTCCAAATGTTTTGGTTATGCGTGAAATTTGGATTTTTTTTGGCATTTTTTGCACTTGTAAAGTTTTTTGTTTTAATGGGATTTCTGAATTT</canonical_amplicon>
		<polymorphic_amplicon>ATCCAATTTTTCACAGATCAACGCTTTTTATTCGTAATGGACTACGTGCGTTTCACATGAAACGGATATTGGATATACTTAAAGGTTTTCTGAAAAGTTCCTTTTTTCAGAAAGTCTGAAAATTTGGATTTTGAACTCTGACCAATTTTTATTAATTCCAAATGTTTTGGTTATGCGTGAAATTTGGAMTTTTTTTGGCATTTTTTGCACTTGTAAAGTTTTTTGTTTTAATGGGATTTCTGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38970</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>402289</contig_pos>
        <strand></strand>
        <context>GCATTTTTTG[C/A]ACTTGTAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CCAAATGTTTTGGTTATGCGTGAAATTTGGATTTTTTTTGGCATTTTTTG</left_flank>
        <right_flank>ACTTGTAAAGTTTTTTGTTTTAATGGGATTTCTGAATTTGAGAGACTCCA</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTTGAAAGCTTCGAATTTCGCAAGTTTCCCAAAGATATGTCATTTCTATAACTATGTAAAAACCTGATCCCTATGATCCACAACTTTCTGCCAAGACAATTTCTATGGTCCCCGGAGAATCTCTGGTTTACGTCACATTGTTTTTCAGCCTGTTGTTTAGAGATCACCAAAATTATGAAGGAACCAAAAACTAGAAGATCTCTTATTTTTCAATAAATGCAGACATCAAAGTACTCATAGGAACAAAACGAGACAAATTAATATCCTCTTTCTTTTTGAAATTCTTCGAAATCCAATTTTTCACAGATCAACGCTTTTTATTCGTAATGGACTACGTGCGTTTCACATGAAACGGATATTGGATATACTTAAAGGTTTTCTGAAAAGTTCCTTTTTTCAGAAAGTCTGAAAATTTGGATTTTGAACTCTGACCAATTTTTATTAATTCCAAATGTTTTGGTTATGCGTGAAATTTGGATTTTTTTTGGCATTTTTTGCACTTGTAAAGTTTTTTGTTTTAATGGGATTTCTGAATTTGAGAGACTCCAAAAGCACAAAAAATTAAAAAAGAGCACCTGATATTTTCTAACTTTTTGTTTCCTTCCACCACAATTTTATCATCAATTATGCAGACATCACAACTAATTAGGTGGCCTGGGGGGAGTCAGTTGACGGTCACGAGCTCTAATAACCTCATATTTTTCCAAATACTCGCTTTTTAGAATTCTGAGATTCTGATAGTGAGATTCTAAAAATCTAGTAGCGCGCTTTTCGGTAACTTAATTTCCGATTCTTCCGAATTTCTGAGTTTCCATATTTTTTAGAATTTTCAGGGATTTTCAGAATGCAGGAGTTTTCAGACAATAGTCAATTTTGCAATAAATTGAAAAAACTCCGGTTTTTATAGCTTTTGTAACTTTTTTATTATGTACTGCTAATGTTCTAAATTAGCAAATCTCGAATTTTTGATTTACTACCAGATTCTTAATTTTCGGTTT</canonical>
            <polymorphic>TATTTGAAAGCTTCGAATTTCGCAAGTTTCCCAAAGATATGTCATTTCTATAACTATGTAAAAACCTGATCCCTATGATCCACAACTTTCTGCCAAGACAATTTCTATGGTCCCCGGAGAATCTCTGGTTTACGTCACATTGTTTTTCAGCCTGTTGTTTAGAGATCACCAAAATTATGAAGGAACCAAAAACTAGAAGATCTCTTATTTTTCAATAAATGCAGACATCAAAGTACTCATAGGAACAAAACGAGACAAATTAATATCCTCTTTCTTTTTGAAATTCTTCGAAATCCAATTTTTCACAGATCAACGCTTTTTATTCGTAATGGACTACGTGCGTTTCACATGAAACGGATATTGGATATACTTAAAGGTTTTCTGAAAAGTTCCTTTTTTCAGAAAGTCTGAAAATTTGGATTTTGAACTCTGACCAATTTTTATTAATTCCAAATGTTTTGGTTATGCGTGAAATTTGGATTTTTTTTGGCATTTTTTGMACTTGTAAAGTTTTTTGTTTTAATGGGATTTCTGAATTTGAGAGACTCCAAAAGCACAAAAAATTAAAAAAGAGCACCTGATATTTTCTAACTTTTTGTTTCCTTCCACCACAATTTTATCATCAATTATGCAGACATCACAACTAATTAGGTGGCCTGGGGGGAGTCAGTTGACGGTCACGAGCTCTAATAACCTCATATTTTTCCAAATACTCGCTTTTTAGAATTCTGAGATTCTGATAGTGAGATTCTAAAAATCTAGTAGCGCGCTTTTCGGTAACTTAATTTCCGATTCTTCCGAATTTCTGAGTTTCCATATTTTTTAGAATTTTCAGGGATTTTCAGAATGCAGGAGTTTTCAGACAATAGTCAATTTTGCAATAAATTGAAAAAACTCCGGTTTTTATAGCTTTTGTAACTTTTTTATTATGTACTGCTAATGTTCTAAATTAGCAAATCTCGAATTTTTGATTTACTACCAGATTCTTAATTTTCGGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCANNNNNTGC</site>
                <isoschizomers>
                    <enzyme>ApaBI</enzyme>
                    <enzyme>BstAPI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>278 221 218 132 122 29</canonical_bands>
                <polymorphic_bands>410 221 218 122 29</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>255 137 124 82 65 55 55 35 32 31 30 29 26 20 14 7 3</canonical_bands>
                <polymorphic_bands>255 137 124 85 82 65 55 35 32 31 29 26 20 14 7 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAAAATTTGGATTTTGAACT</pcr_primer_p1>
		<pcr_primer_p2>TAGTTGTGATGTCTGCATAATTG</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAATTTGGATTTTGAACTCTGACCAATTTTTATTAATTCCAAATGTTTTGGTTATGCGTGAAATTTGGATTTTTTTTGGCATTTTTTGCACTTGTAAAGTTTTTTGTTTTAATGGGATTTCTGAATTTGAGAGACTCCAAAAGCACAAAAAATTAAAAAAGAGCACCTGATATTTTCTAACTTTTTGTTTCCTTCCACCACAATTTTATCATCAATTATGCAGACATCACAACTA</canonical_amplicon>
		<polymorphic_amplicon>CTGAAAATTTGGATTTTGAACTCTGACCAATTTTTATTAATTCCAAATGTTTTGGTTATGCGTGAAATTTGGATTTTTTTTGGCATTTTTTGMACTTGTAAAGTTTTTTGTTTTAATGGGATTTCTGAATTTGAGAGACTCCAAAAGCACAAAAAATTAAAAAAGAGCACCTGATATTTTCTAACTTTTTGTTTCCTTCCACCACAATTTTATCATCAATTATGCAGACATCACAACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38971</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>403605</contig_pos>
        <strand></strand>
        <context>ctgcaagaga[T/C]atcaagaatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTCTAATATAGGCCCGCTCTGAGCTAATTTATTTCGGCTCCTGCAAGAGA</left_flank>
        <right_flank>ATCAAGAATTTATTGTCTGATAGAATATTGGTGATTCTGTGATAAATACT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAAAAAAAAAATGAACCTATTTCTAAGCACTGACTCCAACCGTTTCGTGCCACTCATCAACGGCTACTTCAATTTCTATGTCCTCTTTGGTCTCATTTTCCAACTATTTCTCATTTTTCTAATCATCACCAAATCACCACACAATCTGAAAGACCTGAAGATGTTTCTATACAATACGACTTGGTGTCAGATAGCAAACATTCTGGCCGCTTATTTTATACAATACCGGTATCTTTTTATTTGACCCCTCTTTTCTTTATATTTCTCTTCAGGGCGTTACCCAACTCGACGACGATGGCGGTTCTGGCATCGGGGTTTTGTAGGAAGTTCGGACCGGATGTGTGCTTTTCAACATATCATATATTTGTGGTATGTGTTTAGCGGAAGAAAAAATAAAAATTGAAACGAGGAAGCTTTGAAATTTGAAATCGCAGAGTAGCCATAATGCTCTAATATAGGCCCGCTCTGAGCTAATTTATTTCGGCTCCTGCAAGAGATATCAAGAATTTATTGTCTGATAGAATATTGGTGATTCTGTGATAAATACTTTATCAGTTGACTACTTTTTTAATTCTATTGGAGGCGCCGAGATAGTTGAGCTCAAAGTGCTCGAAAAAGGGGCTTCTAGTAGAGCAATAACTCGGTTTAAACATGGAATTTCTGCTTGAATTTAAAAAGTAAAATGAATAACTTAAAGAGATCTACAAAATGATATATGATATAACTGATTTAGGAATGTCGTGTTTTCCTCGCTAGCGCTAATCAGACCTATTTTTTTGGAATTCAAACCTGTAAAGCCTGTCAAAGAAAGATCCTCTATCTAATTCTCGAAATTCTCGATATTGATGAAACAAATTCATTCCAGGGCATCAGTTCAAGTGTCGCCATGTCCATCTCAGCCACGGTGGTTTTTCGATATTCGCTGATAAAGAATTGGAGAATGAGCAAAAATGCGTTACTTTTATTAATTGTCTCTAGTCATATTCCTCCGATTATAG</canonical>
            <polymorphic>TCCAAAAAAAAAATGAACCTATTTCTAAGCACTGACTCCAACCGTTTCGTGCCACTCATCAACGGCTACTTCAATTTCTATGTCCTCTTTGGTCTCATTTTCCAACTATTTCTCATTTTTCTAATCATCACCAAATCACCACACAATCTGAAAGACCTGAAGATGTTTCTATACAATACGACTTGGTGTCAGATAGCAAACATTCTGGCCGCTTATTTTATACAATACCGGTATCTTTTTATTTGACCCCTCTTTTCTTTATATTTCTCTTCAGGGCGTTACCCAACTCGACGACGATGGCGGTTCTGGCATCGGGGTTTTGTAGGAAGTTCGGACCGGATGTGTGCTTTTCAACATATCATATATTTGTGGTATGTGTTTAGCGGAAGAAAAAATAAAAATTGAAACGAGGAAGCTTTGAAATTTGAAATCGCAGAGTAGCCATAATGCTCTAATATAGGCCCGCTCTGAGCTAATTTATTTCGGCTCCTGCAAGAGAYATCAAGAATTTATTGTCTGATAGAATATTGGTGATTCTGTGATAAATACTTTATCAGTTGACTACTTTTTTAATTCTATTGGAGGCGCCGAGATAGTTGAGCTCAAAGTGCTCGAAAAAGGGGCTTCTAGTAGAGCAATAACTCGGTTTAAACATGGAATTTCTGCTTGAATTTAAAAAGTAAAATGAATAACTTAAAGAGATCTACAAAATGATATATGATATAACTGATTTAGGAATGTCGTGTTTTCCTCGCTAGCGCTAATCAGACCTATTTTTTTGGAATTCAAACCTGTAAAGCCTGTCAAAGAAAGATCCTCTATCTAATTCTCGAAATTCTCGATATTGATGAAACAAATTCATTCCAGGGCATCAGTTCAAGTGTCGCCATGTCCATCTCAGCCACGGTGGTTTTTCGATATTCGCTGATAAAGAATTGGAGAATGAGCAAAAATGCGTTACTTTTATTAATTGTCTCTAGTCATATTCCTCCGATTATAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACGAGGAAGCTTTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTCTACTAGAAGCCCCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>AAACGAGGAAGCTTTGAAATTTGAAATCGCAGAGTAGCCATAATGCTCTAATATAGGCCCGCTCTGAGCTAATTTATTTCGGCTCCTGCAAGAGATATCAAGAATTTATTGTCTGATAGAATATTGGTGATTCTGTGATAAATACTTTATCAGTTGACTACTTTTTTAATTCTATTGGAGGCGCCGAGATAGTTGAGCTCAAAGTGCTCGAAAAAGGGGCTTCTAGTAGAG</canonical_amplicon>
		<polymorphic_amplicon>AAACGAGGAAGCTTTGAAATTTGAAATCGCAGAGTAGCCATAATGCTCTAATATAGGCCCGCTCTGAGCTAATTTATTTCGGCTCCTGCAAGAGAYATCAAGAATTTATTGTCTGATAGAATATTGGTGATTCTGTGATAAATACTTTATCAGTTGACTACTTTTTTAATTCTATTGGAGGCGCCGAGATAGTTGAGCTCAAAGTGCTCGAAAAAGGGGCTTCTAGTAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38972</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>403621</contig_pos>
        <strand></strand>
        <context>gaatttattg[T/A]ctgatagaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CTCTGAGCTAATTTATTTCGGCTCCTGCAAGAGATATCAAGAATTTATTG</left_flank>
        <right_flank>CTGATAGAATATTGGTGATTCTGTGATAAATACTTTATCAGTTGACTACT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTATTTCTAAGCACTGACTCCAACCGTTTCGTGCCACTCATCAACGGCTACTTCAATTTCTATGTCCTCTTTGGTCTCATTTTCCAACTATTTCTCATTTTTCTAATCATCACCAAATCACCACACAATCTGAAAGACCTGAAGATGTTTCTATACAATACGACTTGGTGTCAGATAGCAAACATTCTGGCCGCTTATTTTATACAATACCGGTATCTTTTTATTTGACCCCTCTTTTCTTTATATTTCTCTTCAGGGCGTTACCCAACTCGACGACGATGGCGGTTCTGGCATCGGGGTTTTGTAGGAAGTTCGGACCGGATGTGTGCTTTTCAACATATCATATATTTGTGGTATGTGTTTAGCGGAAGAAAAAATAAAAATTGAAACGAGGAAGCTTTGAAATTTGAAATCGCAGAGTAGCCATAATGCTCTAATATAGGCCCGCTCTGAGCTAATTTATTTCGGCTCCTGCAAGAGATATCAAGAATTTATTGTCTGATAGAATATTGGTGATTCTGTGATAAATACTTTATCAGTTGACTACTTTTTTAATTCTATTGGAGGCGCCGAGATAGTTGAGCTCAAAGTGCTCGAAAAAGGGGCTTCTAGTAGAGCAATAACTCGGTTTAAACATGGAATTTCTGCTTGAATTTAAAAAGTAAAATGAATAACTTAAAGAGATCTACAAAATGATATATGATATAACTGATTTAGGAATGTCGTGTTTTCCTCGCTAGCGCTAATCAGACCTATTTTTTTGGAATTCAAACCTGTAAAGCCTGTCAAAGAAAGATCCTCTATCTAATTCTCGAAATTCTCGATATTGATGAAACAAATTCATTCCAGGGCATCAGTTCAAGTGTCGCCATGTCCATCTCAGCCACGGTGGTTTTTCGATATTCGCTGATAAAGAATTGGAGAATGAGCAAAAATGCGTTACTTTTATTAATTGTCTCTAGTCATATTCCTCCGATTATAGCTACGGTAGGTATCAA</canonical>
            <polymorphic>ACCTATTTCTAAGCACTGACTCCAACCGTTTCGTGCCACTCATCAACGGCTACTTCAATTTCTATGTCCTCTTTGGTCTCATTTTCCAACTATTTCTCATTTTTCTAATCATCACCAAATCACCACACAATCTGAAAGACCTGAAGATGTTTCTATACAATACGACTTGGTGTCAGATAGCAAACATTCTGGCCGCTTATTTTATACAATACCGGTATCTTTTTATTTGACCCCTCTTTTCTTTATATTTCTCTTCAGGGCGTTACCCAACTCGACGACGATGGCGGTTCTGGCATCGGGGTTTTGTAGGAAGTTCGGACCGGATGTGTGCTTTTCAACATATCATATATTTGTGGTATGTGTTTAGCGGAAGAAAAAATAAAAATTGAAACGAGGAAGCTTTGAAATTTGAAATCGCAGAGTAGCCATAATGCTCTAATATAGGCCCGCTCTGAGCTAATTTATTTCGGCTCCTGCAAGAGATATCAAGAATTTATTGWCTGATAGAATATTGGTGATTCTGTGATAAATACTTTATCAGTTGACTACTTTTTTAATTCTATTGGAGGCGCCGAGATAGTTGAGCTCAAAGTGCTCGAAAAAGGGGCTTCTAGTAGAGCAATAACTCGGTTTAAACATGGAATTTCTGCTTGAATTTAAAAAGTAAAATGAATAACTTAAAGAGATCTACAAAATGATATATGATATAACTGATTTAGGAATGTCGTGTTTTCCTCGCTAGCGCTAATCAGACCTATTTTTTTGGAATTCAAACCTGTAAAGCCTGTCAAAGAAAGATCCTCTATCTAATTCTCGAAATTCTCGATATTGATGAAACAAATTCATTCCAGGGCATCAGTTCAAGTGTCGCCATGTCCATCTCAGCCACGGTGGTTTTTCGATATTCGCTGATAAAGAATTGGAGAATGAGCAAAAATGCGTTACTTTTATTAATTGTCTCTAGTCATATTCCTCCGATTATAGCTACGGTAGGTATCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>249 225 142 136 133 49 42 24</canonical_bands>
                <polymorphic_bands>298 225 142 136 133 42 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAACGAGGAAGCTTTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>CTCTACTAGAAGCCCCTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>231</pcr_amplicon_size>
		<canonical_amplicon>AAACGAGGAAGCTTTGAAATTTGAAATCGCAGAGTAGCCATAATGCTCTAATATAGGCCCGCTCTGAGCTAATTTATTTCGGCTCCTGCAAGAGATATCAAGAATTTATTGTCTGATAGAATATTGGTGATTCTGTGATAAATACTTTATCAGTTGACTACTTTTTTAATTCTATTGGAGGCGCCGAGATAGTTGAGCTCAAAGTGCTCGAAAAAGGGGCTTCTAGTAGAG</canonical_amplicon>
		<polymorphic_amplicon>AAACGAGGAAGCTTTGAAATTTGAAATCGCAGAGTAGCCATAATGCTCTAATATAGGCCCGCTCTGAGCTAATTTATTTCGGCTCCTGCAAGAGATATCAAGAATTTATTGWCTGATAGAATATTGGTGATTCTGTGATAAATACTTTATCAGTTGACTACTTTTTTAATTCTATTGGAGGCGCCGAGATAGTTGAGCTCAAAGTGCTCGAAAAAGGGGCTTCTAGTAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38973</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>412073</contig_pos>
        <strand></strand>
        <context>tctctcgaaa[T/A]tttcaaaatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTCATTCACTAAGAAGAAAAACCATCTTGAAAATGATGATTCTCTCGAAA</left_flank>
        <right_flank>TTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTGATTTTTTCCGGCCC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGACAAAAATCGATTCAAAAGGATACTGTAAAACCTGTATTAGAAGGACCGGTCCTTCTATTTTTCCAAGGTACCTCCGGAGGGCCCTTCAATTAGAAGGGGACCCTTCTATTTTTCCAAACCCCTTTTGGAGGGCCTTTCTATTAGAGGGGTACTTCTATTAAAGGGGCCCTGCTAATACCATACATGTGGATGGCCGGGCCGGGCCGCTTGCCTCAAAACTTTCGGCCCGCCTAGGACAACTTTTCGAAAATTTTATTTTTCGAATGTGCCAAAATATTTATAATGGCACCAATATTAATCCAAATGAAAACCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAAACCAAACTTCATTAAGCCAAGGATGAAACTTCTTTTTCTAATTACGACTTCAAAACAGTTTTTGTCGACAGTATCGGCCTCTAGTGTGGATTTTCATTCACTAAGAAGAAAAACCATCTTGAAAATGATGATTCTCTCGAAATTTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTGATTTTTTCCGGCCCGGCCCGCGGGCCGCTATCTTTTCCACAAGTATGGCTAATACCGATTTTACGGTAATTAAAAAATCAGCTAACAAACCACGCACAATCCGTAATCTTATTCCAGTAGGATATGGTGCTAACGTTGAGTCCCGAACCACTTGAGATCTGCAGGAATGACGAGGTGACGACGTATTTGTATGGTTTGCCTGCGGCCACAAGCTTCTTCGTGATCTGTTCGACGGCCTTCTGATTCCATTGAACACTATCTTTGTGCGTGTACGTCGCGTTCGCACCGACCGTCTCGTCGAGCACCTGCTTGATGATCATATGGACATCCTCCTCCGGCAGAGCCATGATGTTAAATATGCCTGTATAGGAAAAATGTCACGAAATTCGTAAAACTCGGAAAAAAAAATTCAAAGATAGACAAAACTCGGCGTTAACCGAAAAAAAATCAGTTATTGGAGCAGA</canonical>
            <polymorphic>AATGACAAAAATCGATTCAAAAGGATACTGTAAAACCTGTATTAGAAGGACCGGTCCTTCTATTTTTCCAAGGTACCTCCGGAGGGCCCTTCAATTAGAAGGGGACCCTTCTATTTTTCCAAACCCCTTTTGGAGGGCCTTTCTATTAGAGGGGTACTTCTATTAAAGGGGCCCTGCTAATACCATACATGTGGATGGCCGGGCCGGGCCGCTTGCCTCAAAACTTTCGGCCCGCCTAGGACAACTTTTCGAAAATTTTATTTTTCGAATGTGCCAAAATATTTATAATGGCACCAATATTAATCCAAATGAAAACCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAAACCAAACTTCATTAAGCCAAGGATGAAACTTCTTTTTCTAATTACGACTTCAAAACAGTTTTTGTCGACAGTATCGGCCTCTAGTGTGGATTTTCATTCACTAAGAAGAAAAACCATCTTGAAAATGATGATTCTCTCGAAAWTTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTGATTTTTTCCGGCCCGGCCCGCGGGCCGCTATCTTTTCCACAAGTATGGCTAATACCGATTTTACGGTAATTAAAAAATCAGCTAACAAACCACGCACAATCCGTAATCTTATTCCAGTAGGATATGGTGCTAACGTTGAGTCCCGAACCACTTGAGATCTGCAGGAATGACGAGGTGACGACGTATTTGTATGGTTTGCCTGCGGCCACAAGCTTCTTCGTGATCTGTTCGACGGCCTTCTGATTCCATTGAACACTATCTTTGTGCGTGTACGTCGCGTTCGCACCGACCGTCTCGTCGAGCACCTGCTTGATGATCATATGGACATCCTCCTCCGGCAGAGCCATGATGTTAAATATGCCTGTATAGGAAAAATGTCACGAAATTCGTAAAACTCGGAAAAAAAAATTCAAAGATAGACAAAACTCGGCGTTAACCGAAAAAAAATCAGTTATTGGAGCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>413 253 157 87 58 23 9</canonical_bands>
                <polymorphic_bands>413 253 166 87 58 23</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>316 161 101 97 92 77 58 56 23 9 5 5</canonical_bands>
                <polymorphic_bands>316 161 110 97 92 77 58 56 23 5 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGCTAATACCATACATGTGGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTAATTACCGTAAAATCGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>438</pcr_amplicon_size>
		<canonical_amplicon>CTGCTAATACCATACATGTGGATGGCCGGGCCGGGCCGCTTGCCTCAAAACTTTCGGCCCGCCTAGGACAACTTTTCGAAAATTTTATTTTTCGAATGTGCCAAAATATTTATAATGGCACCAATATTAATCCAAATGAAAACCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAAACCAAACTTCATTAAGCCAAGGATGAAACTTCTTTTTCTAATTACGACTTCAAAACAGTTTTTGTCGACAGTATCGGCCTCTAGTGTGGATTTTCATTCACTAAGAAGAAAAACCATCTTGAAAATGATGATTCTCTCGAAATTTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTGATTTTTTCCGGCCCGGCCCGCGGGCCGCTATCTTTTCCACAAGTATGGCTAATACCGATTTTACGGTAATTAAAA</canonical_amplicon>
		<polymorphic_amplicon>CTGCTAATACCATACATGTGGATGGCCGGGCCGGGCCGCTTGCCTCAAAACTTTCGGCCCGCCTAGGACAACTTTTCGAAAATTTTATTTTTCGAATGTGCCAAAATATTTATAATGGCACCAATATTAATCCAAATGAAAACCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAAACCAAACTTCATTAAGCCAAGGATGAAACTTCTTTTTCTAATTACGACTTCAAAACAGTTTTTGTCGACAGTATCGGCCTCTAGTGTGGATTTTCATTCACTAAGAAGAAAAACCATCTTGAAAATGATGATTCTCTCGAAAWTTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTGATTTTTTCCGGCCCGGCCCGCGGGCCGCTATCTTTTCCACAAGTATGGCTAATACCGATTTTACGGTAATTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38974</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>412109</contig_pos>
        <strand></strand>
        <context>ggccatgtgt[G/A]attttttccg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGATTCTCTCGAAATTTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGT</left_flank>
        <right_flank>ATTTTTTCCGGCCCGGCCCGCGGGCCGCTATCTTTTCCACAAGTATGGCT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGTATTAGAAGGACCGGTCCTTCTATTTTTCCAAGGTACCTCCGGAGGGCCCTTCAATTAGAAGGGGACCCTTCTATTTTTCCAAACCCCTTTTGGAGGGCCTTTCTATTAGAGGGGTACTTCTATTAAAGGGGCCCTGCTAATACCATACATGTGGATGGCCGGGCCGGGCCGCTTGCCTCAAAACTTTCGGCCCGCCTAGGACAACTTTTCGAAAATTTTATTTTTCGAATGTGCCAAAATATTTATAATGGCACCAATATTAATCCAAATGAAAACCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAAACCAAACTTCATTAAGCCAAGGATGAAACTTCTTTTTCTAATTACGACTTCAAAACAGTTTTTGTCGACAGTATCGGCCTCTAGTGTGGATTTTCATTCACTAAGAAGAAAAACCATCTTGAAAATGATGATTCTCTCGAAATTTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTGATTTTTTCCGGCCCGGCCCGCGGGCCGCTATCTTTTCCACAAGTATGGCTAATACCGATTTTACGGTAATTAAAAAATCAGCTAACAAACCACGCACAATCCGTAATCTTATTCCAGTAGGATATGGTGCTAACGTTGAGTCCCGAACCACTTGAGATCTGCAGGAATGACGAGGTGACGACGTATTTGTATGGTTTGCCTGCGGCCACAAGCTTCTTCGTGATCTGTTCGACGGCCTTCTGATTCCATTGAACACTATCTTTGTGCGTGTACGTCGCGTTCGCACCGACCGTCTCGTCGAGCACCTGCTTGATGATCATATGGACATCCTCCTCCGGCAGAGCCATGATGTTAAATATGCCTGTATAGGAAAAATGTCACGAAATTCGTAAAACTCGGAAAAAAAAATTCAAAGATAGACAAAACTCGGCGTTAACCGAAAAAAAATCAGTTATTGGAGCAGACACACAAAATCATGGATTTCATTTTAGATTATTCTC</canonical>
            <polymorphic>CTGTATTAGAAGGACCGGTCCTTCTATTTTTCCAAGGTACCTCCGGAGGGCCCTTCAATTAGAAGGGGACCCTTCTATTTTTCCAAACCCCTTTTGGAGGGCCTTTCTATTAGAGGGGTACTTCTATTAAAGGGGCCCTGCTAATACCATACATGTGGATGGCCGGGCCGGGCCGCTTGCCTCAAAACTTTCGGCCCGCCTAGGACAACTTTTCGAAAATTTTATTTTTCGAATGTGCCAAAATATTTATAATGGCACCAATATTAATCCAAATGAAAACCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAAACCAAACTTCATTAAGCCAAGGATGAAACTTCTTTTTCTAATTACGACTTCAAAACAGTTTTTGTCGACAGTATCGGCCTCTAGTGTGGATTTTCATTCACTAAGAAGAAAAACCATCTTGAAAATGATGATTCTCTCGAAATTTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTRATTTTTTCCGGCCCGGCCCGCGGGCCGCTATCTTTTCCACAAGTATGGCTAATACCGATTTTACGGTAATTAAAAAATCAGCTAACAAACCACGCACAATCCGTAATCTTATTCCAGTAGGATATGGTGCTAACGTTGAGTCCCGAACCACTTGAGATCTGCAGGAATGACGAGGTGACGACGTATTTGTATGGTTTGCCTGCGGCCACAAGCTTCTTCGTGATCTGTTCGACGGCCTTCTGATTCCATTGAACACTATCTTTGTGCGTGTACGTCGCGTTCGCACCGACCGTCTCGTCGAGCACCTGCTTGATGATCATATGGACATCCTCCTCCGGCAGAGCCATGATGTTAAATATGCCTGTATAGGAAAAATGTCACGAAATTCGTAAAACTCGGAAAAAAAAATTCAAAGATAGACAAAACTCGGCGTTAACCGAAAAAAAATCAGTTATTGGAGCAGACACACAAAATCATGGATTTCATTTTAGATTATTCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>157 150 86 80 77 76 53 39 33 33 32 31 27 21 20 19 15 14 12 11 4 4 2 2 2</canonical_bands>
                <polymorphic_bands>157 150 86 80 77 76 53 41 33 33 32 31 27 21 20 19 15 14 12 11 4 4 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGCTAATACCATACATGTGGA</pcr_primer_p1>
		<pcr_primer_p2>TTTTAATTACCGTAAAATCGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>438</pcr_amplicon_size>
		<canonical_amplicon>CTGCTAATACCATACATGTGGATGGCCGGGCCGGGCCGCTTGCCTCAAAACTTTCGGCCCGCCTAGGACAACTTTTCGAAAATTTTATTTTTCGAATGTGCCAAAATATTTATAATGGCACCAATATTAATCCAAATGAAAACCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAAACCAAACTTCATTAAGCCAAGGATGAAACTTCTTTTTCTAATTACGACTTCAAAACAGTTTTTGTCGACAGTATCGGCCTCTAGTGTGGATTTTCATTCACTAAGAAGAAAAACCATCTTGAAAATGATGATTCTCTCGAAATTTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTGATTTTTTCCGGCCCGGCCCGCGGGCCGCTATCTTTTCCACAAGTATGGCTAATACCGATTTTACGGTAATTAAAA</canonical_amplicon>
		<polymorphic_amplicon>CTGCTAATACCATACATGTGGATGGCCGGGCCGGGCCGCTTGCCTCAAAACTTTCGGCCCGCCTAGGACAACTTTTCGAAAATTTTATTTTTCGAATGTGCCAAAATATTTATAATGGCACCAATATTAATCCAAATGAAAACCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAAACCAAACTTCATTAAGCCAAGGATGAAACTTCTTTTTCTAATTACGACTTCAAAACAGTTTTTGTCGACAGTATCGGCCTCTAGTGTGGATTTTCATTCACTAAGAAGAAAAACCATCTTGAAAATGATGATTCTCTCGAAATTTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTRATTTTTTCCGGCCCGGCCCGCGGGCCGCTATCTTTTCCACAAGTATGGCTAATACCGATTTTACGGTAATTAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38975</snp_id>
        <super_contig>c013400852.Contig4</super_contig>
        <contig_pos>412137</contig_pos>
        <strand></strand>
        <context>ccgcgggccg[C/G]tatcttttcc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAAAGCGGGCCGGCCATGTGTGATTTTTTCCGGCCCGGCCCGCGGGCCG</left_flank>
        <right_flank>TATCTTTTCCACAAGTATGGCTAATACCGATTTTACGGTAATTAAAAAAT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCCAAGGTACCTCCGGAGGGCCCTTCAATTAGAAGGGGACCCTTCTATTTTTCCAAACCCCTTTTGGAGGGCCTTTCTATTAGAGGGGTACTTCTATTAAAGGGGCCCTGCTAATACCATACATGTGGATGGCCGGGCCGGGCCGCTTGCCTCAAAACTTTCGGCCCGCCTAGGACAACTTTTCGAAAATTTTATTTTTCGAATGTGCCAAAATATTTATAATGGCACCAATATTAATCCAAATGAAAACCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAAACCAAACTTCATTAAGCCAAGGATGAAACTTCTTTTTCTAATTACGACTTCAAAACAGTTTTTGTCGACAGTATCGGCCTCTAGTGTGGATTTTCATTCACTAAGAAGAAAAACCATCTTGAAAATGATGATTCTCTCGAAATTTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTGATTTTTTCCGGCCCGGCCCGCGGGCCGCTATCTTTTCCACAAGTATGGCTAATACCGATTTTACGGTAATTAAAAAATCAGCTAACAAACCACGCACAATCCGTAATCTTATTCCAGTAGGATATGGTGCTAACGTTGAGTCCCGAACCACTTGAGATCTGCAGGAATGACGAGGTGACGACGTATTTGTATGGTTTGCCTGCGGCCACAAGCTTCTTCGTGATCTGTTCGACGGCCTTCTGATTCCATTGAACACTATCTTTGTGCGTGTACGTCGCGTTCGCACCGACCGTCTCGTCGAGCACCTGCTTGATGATCATATGGACATCCTCCTCCGGCAGAGCCATGATGTTAAATATGCCTGTATAGGAAAAATGTCACGAAATTCGTAAAACTCGGAAAAAAAAATTCAAAGATAGACAAAACTCGGCGTTAACCGAAAAAAAATCAGTTATTGGAGCAGACACACAAAATCATGGATTTCATTTTAGATTATTCTCCCTATTGGGAATTGACTAGGAATATAAG</canonical>
            <polymorphic>TTTCCAAGGTACCTCCGGAGGGCCCTTCAATTAGAAGGGGACCCTTCTATTTTTCCAAACCCCTTTTGGAGGGCCTTTCTATTAGAGGGGTACTTCTATTAAAGGGGCCCTGCTAATACCATACATGTGGATGGCCGGGCCGGGCCGCTTGCCTCAAAACTTTCGGCCCGCCTAGGACAACTTTTCGAAAATTTTATTTTTCGAATGTGCCAAAATATTTATAATGGCACCAATATTAATCCAAATGAAAACCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAAACCAAACTTCATTAAGCCAAGGATGAAACTTCTTTTTCTAATTACGACTTCAAAACAGTTTTTGTCGACAGTATCGGCCTCTAGTGTGGATTTTCATTCACTAAGAAGAAAAACCATCTTGAAAATGATGATTCTCTCGAAATTTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTGATTTTTTCCGGCCCGGCCCGCGGGCCGSTATCTTTTCCACAAGTATGGCTAATACCGATTTTACGGTAATTAAAAAATCAGCTAACAAACCACGCACAATCCGTAATCTTATTCCAGTAGGATATGGTGCTAACGTTGAGTCCCGAACCACTTGAGATCTGCAGGAATGACGAGGTGACGACGTATTTGTATGGTTTGCCTGCGGCCACAAGCTTCTTCGTGATCTGTTCGACGGCCTTCTGATTCCATTGAACACTATCTTTGTGCGTGTACGTCGCGTTCGCACCGACCGTCTCGTCGAGCACCTGCTTGATGATCATATGGACATCCTCCTCCGGCAGAGCCATGATGTTAAATATGCCTGTATAGGAAAAATGTCACGAAATTCGTAAAACTCGGAAAAAAAAATTCAAAGATAGACAAAACTCGGCGTTAACCGAAAAAAAATCAGTTATTGGAGCAGACACACAAAATCATGGATTTCATTTTAGATTATTCTCCCTATTGGGAATTGACTAGGAATATAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 322 145 23 7</canonical_bands>
                <polymorphic_bands>510 322 145 23</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>352 323 178 147</canonical_bands>
                <polymorphic_bands>530 323 147</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>352 323 178 147</canonical_bands>
                <polymorphic_bands>530 323 147</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGCTAATACCATACATGTGGA</pcr_primer_p1>
		<pcr_primer_p2>CGTGGTTTGTTAGCTGATTT</pcr_primer_p2>
		<pcr_amplicon_size>457</pcr_amplicon_size>
		<canonical_amplicon>CTGCTAATACCATACATGTGGATGGCCGGGCCGGGCCGCTTGCCTCAAAACTTTCGGCCCGCCTAGGACAACTTTTCGAAAATTTTATTTTTCGAATGTGCCAAAATATTTATAATGGCACCAATATTAATCCAAATGAAAACCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAAACCAAACTTCATTAAGCCAAGGATGAAACTTCTTTTTCTAATTACGACTTCAAAACAGTTTTTGTCGACAGTATCGGCCTCTAGTGTGGATTTTCATTCACTAAGAAGAAAAACCATCTTGAAAATGATGATTCTCTCGAAATTTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTGATTTTTTCCGGCCCGGCCCGCGGGCCGCTATCTTTTCCACAAGTATGGCTAATACCGATTTTACGGTAATTAAAAAATCAGCTAACAAACCACG</canonical_amplicon>
		<polymorphic_amplicon>CTGCTAATACCATACATGTGGATGGCCGGGCCGGGCCGCTTGCCTCAAAACTTTCGGCCCGCCTAGGACAACTTTTCGAAAATTTTATTTTTCGAATGTGCCAAAATATTTATAATGGCACCAATATTAATCCAAATGAAAACCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAAACCAAACTTCATTAAGCCAAGGATGAAACTTCTTTTTCTAATTACGACTTCAAAACAGTTTTTGTCGACAGTATCGGCCTCTAGTGTGGATTTTCATTCACTAAGAAGAAAAACCATCTTGAAAATGATGATTCTCTCGAAATTTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTGATTTTTTCCGGCCCGGCCCGCGGGCCGSTATCTTTTCCACAAGTATGGCTAATACCGATTTTACGGTAATTAAAAAATCAGCTAACAAACCACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38976</snp_id>
        <super_contig>c013401043.Contig1</super_contig>
        <contig_pos>21998</contig_pos>
        <strand>+</strand>
        <context>AGTTTCCATT[C/T]GATACACCAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGACCCATTGAAGAGCAAGAGTCTGATCCCACAATGCATAGTTTCCATT</left_flank>
        <right_flank>GATACACCATCAGCAATGGTTAGAAAACCCATAGGACCTAGTCTGTAGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGGAAAAAGTCTCCATCGAAATTGGGAACAAATGGAACAACTCCTGCTTCTTTAGATCGGAAACCGCCTTTGAAATTGGAAGGATCCTGGGCATGATACCAAGCAAACAAACTTTGTGAGTCTGAAAATCACGAAGTATTATCCTAAAGTGTTTTTTTTTTCAAAAAATTAAACCATTTCCAGCGTATCCCTTGGATTGAGCATACTGCAGTCCCACTGATGCTTCCACTCTCTGCGGTCGAATCGCAAAATTGCAGAAGGCAGTTCCAGACATTTGAATAGATCTTCGGAATAGTTCTGAATAAAATATCGCACTTTCAATATCATTTTTGAGTACTCACTGTTCGAATGAGGACTCAACGATAGGAAATCAGTACTCGCAGATCCTGCACTAGTTCCAGCAAGAGTCACCATAGCTGGATCACCTCCAAACGCAGCGATATTATCCTGGACCCATTGAAGAGCAAGAGTCTGATCCCACAATGCATAGTTTCCATTCGATACACCATCAGCAATGGTTAGAAAACCCATAGGACCTAGTCTGTAGTTCATGGTAACCAGGATAATATCCCTCTGTGGAATTGTTCCAGTAATTGCATATCCATCCATGTAAGAAGTGTATCCTATCTCGAATCCTCCTCCGTAAATGTAAACTAACACCGGTAATCCTTTGGGCTGAAAATAGGAGATCAAATGAAACACTCATAGGAAAAAAGTTTACGAATTCGGTCAAATTCCATCTCGGTGCAAAAACGTTTAATGTTAGGCAGTTGTCTTCTAAGAACGGGCAGGTTTTTGTGGCGGTTAGCTGAAAACACTGATTAACTTTTCTAGAGATACCGTAAAACTTGTATTAGAAAAACCCCCCGAAATTTAAGGGCTCCTTTAATTGAAGAAAAAAAAATACACGAAAAATATAAGGGCTGGCCCTTATATTAAAGGTTTTACGGCGAATCTTGAAATCTATTCTCACCCCGGAAAATTGTCCGGTTTGGGGAC</canonical>
            <polymorphic>TGGGAAAAAGTCTCCATCGAAATTGGGAACAAATGGAACAACTCCTGCTTCTTTAGATCGGAAACCGCCTTTGAAATTGGAAGGATCCTGGGCATGATACCAAGCAAACAAACTTTGTGAGTCTGAAAATCACGAAGTATTATCCTAAAGTGTTTTTTTTTTCAAAAAATTAAACCATTTCCAGCGTATCCCTTGGATTGAGCATACTGCAGTCCCACTGATGCTTCCACTCTCTGCGGTCGAATCGCAAAATTGCAGAAGGCAGTTCCAGACATTTGAATAGATCTTCGGAATAGTTCTGAATAAAATATCGCACTTTCAATATCATTTTTGAGTACTCACTGTTCGAATGAGGACTCAACGATAGGAAATCAGTACTCGCAGATCCTGCACTAGTTCCAGCAAGAGTCACCATAGCTGGATCACCTCCAAACGCAGCGATATTATCCTGGACCCATTGAAGAGCAAGAGTCTGATCCCACAATGCATAGTTTCCATTYGATACACCATCAGCAATGGTTAGAAAACCCATAGGACCTAGTCTGTAGTTCATGGTAACCAGGATAATATCCCTCTGTGGAATTGTTCCAGTAATTGCATATCCATCCATGTAAGAAGTGTATCCTATCTCGAATCCTCCTCCGTAAATGTAAACTAACACCGGTAATCCTTTGGGCTGAAAATAGGAGATCAAATGAAACACTCATAGGAAAAAAGTTTACGAATTCGGTCAAATTCCATCTCGGTGCAAAAACGTTTAATGTTAGGCAGTTGTCTTCTAAGAACGGGCAGGTTTTTGTGGCGGTTAGCTGAAAACACTGATTAACTTTTCTAGAGATACCGTAAAACTTGTATTAGAAAAACCCCCCGAAATTTAAGGGCTCCTTTAATTGAAGAAAAAAAAATACACGAAAAATATAAGGGCTGGCCCTTATATTAAAGGTTTTACGGCGAATCTTGAAATCTATTCTCACCCCGGAAAATTGTCCGGTTTGGGGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>369 223 153 131 106 18</canonical_bands>
                <polymorphic_bands>369 284 223 106 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTCAACGATAGGAAATCAGTA</pcr_primer_p1>
		<pcr_primer_p2>ATATGCAATTACTGGAACAATTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GACTCAACGATAGGAAATCAGTACTCGCAGATCCTGCACTAGTTCCAGCAAGAGTCACCATAGCTGGATCACCTCCAAACGCAGCGATATTATCCTGGACCCATTGAAGAGCAAGAGTCTGATCCCACAATGCATAGTTTCCATTCGATACACCATCAGCAATGGTTAGAAAACCCATAGGACCTAGTCTGTAGTTCATGGTAACCAGGATAATATCCCTCTGTGGAATTGTTCCAGTAATTGCATAT</canonical_amplicon>
		<polymorphic_amplicon>GACTCAACGATAGGAAATCAGTACTCGCAGATCCTGCACTAGTTCCAGCAAGAGTCACCATAGCTGGATCACCTCCAAACGCAGCGATATTATCCTGGACCCATTGAAGAGCAAGAGTCTGATCCCACAATGCATAGTTTCCATTYGATACACCATCAGCAATGGTTAGAAAACCCATAGGACCTAGTCTGTAGTTCATGGTAACCAGGATAATATCCCTCTGTGGAATTGTTCCAGTAATTGCATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38977</snp_id>
        <super_contig>c013401043.Contig1</super_contig>
        <contig_pos>22046</contig_pos>
        <strand>+</strand>
        <context>CTAGTCTGTA[A/G]TTCATGGTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGATACACCATCAGCAATGGTTAGAAAACCCATAGGACCTAGTCTGTA</left_flank>
        <right_flank>TTCATGGTAACCAGGATAATATCCCTCTGTGGAATTGTTCCAGTAATTGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTTAGATCGGAAACCGCCTTTGAAATTGGAAGGATCCTGGGCATGATACCAAGCAAACAAACTTTGTGAGTCTGAAAATCACGAAGTATTATCCTAAAGTGTTTTTTTTTTCAAAAAATTAAACCATTTCCAGCGTATCCCTTGGATTGAGCATACTGCAGTCCCACTGATGCTTCCACTCTCTGCGGTCGAATCGCAAAATTGCAGAAGGCAGTTCCAGACATTTGAATAGATCTTCGGAATAGTTCTGAATAAAATATCGCACTTTCAATATCATTTTTGAGTACTCACTGTTCGAATGAGGACTCAACGATAGGAAATCAGTACTCGCAGATCCTGCACTAGTTCCAGCAAGAGTCACCATAGCTGGATCACCTCCAAACGCAGCGATATTATCCTGGACCCATTGAAGAGCAAGAGTCTGATCCCACAATGCATAGTTTCCATTCGATACACCATCAGCAATGGTTAGAAAACCCATAGGACCTAGTCTGTAGTTCATGGTAACCAGGATAATATCCCTCTGTGGAATTGTTCCAGTAATTGCATATCCATCCATGTAAGAAGTGTATCCTATCTCGAATCCTCCTCCGTAAATGTAAACTAACACCGGTAATCCTTTGGGCTGAAAATAGGAGATCAAATGAAACACTCATAGGAAAAAAGTTTACGAATTCGGTCAAATTCCATCTCGGTGCAAAAACGTTTAATGTTAGGCAGTTGTCTTCTAAGAACGGGCAGGTTTTTGTGGCGGTTAGCTGAAAACACTGATTAACTTTTCTAGAGATACCGTAAAACTTGTATTAGAAAAACCCCCCGAAATTTAAGGGCTCCTTTAATTGAAGAAAAAAAAATACACGAAAAATATAAGGGCTGGCCCTTATATTAAAGGTTTTACGGCGAATCTTGAAATCTATTCTCACCCCGGAAAATTGTCCGGTTTGGGGACAGCCAGGACCATACTCATAACAATCTCTTGTCTCTGTCCATTTATCAA</canonical>
            <polymorphic>TTCTTTAGATCGGAAACCGCCTTTGAAATTGGAAGGATCCTGGGCATGATACCAAGCAAACAAACTTTGTGAGTCTGAAAATCACGAAGTATTATCCTAAAGTGTTTTTTTTTTCAAAAAATTAAACCATTTCCAGCGTATCCCTTGGATTGAGCATACTGCAGTCCCACTGATGCTTCCACTCTCTGCGGTCGAATCGCAAAATTGCAGAAGGCAGTTCCAGACATTTGAATAGATCTTCGGAATAGTTCTGAATAAAATATCGCACTTTCAATATCATTTTTGAGTACTCACTGTTCGAATGAGGACTCAACGATAGGAAATCAGTACTCGCAGATCCTGCACTAGTTCCAGCAAGAGTCACCATAGCTGGATCACCTCCAAACGCAGCGATATTATCCTGGACCCATTGAAGAGCAAGAGTCTGATCCCACAATGCATAGTTTCCATTCGATACACCATCAGCAATGGTTAGAAAACCCATAGGACCTAGTCTGTARTTCATGGTAACCAGGATAATATCCCTCTGTGGAATTGTTCCAGTAATTGCATATCCATCCATGTAAGAAGTGTATCCTATCTCGAATCCTCCTCCGTAAATGTAAACTAACACCGGTAATCCTTTGGGCTGAAAATAGGAGATCAAATGAAACACTCATAGGAAAAAAGTTTACGAATTCGGTCAAATTCCATCTCGGTGCAAAAACGTTTAATGTTAGGCAGTTGTCTTCTAAGAACGGGCAGGTTTTTGTGGCGGTTAGCTGAAAACACTGATTAACTTTTCTAGAGATACCGTAAAACTTGTATTAGAAAAACCCCCCGAAATTTAAGGGCTCCTTTAATTGAAGAAAAAAAAATACACGAAAAATATAAGGGCTGGCCCTTATATTAAAGGTTTTACGGCGAATCTTGAAATCTATTCTCACCCCGGAAAATTGTCCGGTTTGGGGACAGCCAGGACCATACTCATAACAATCTCTTGTCTCTGTCCATTTATCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>505 336 159</canonical_bands>
                <polymorphic_bands>841 159</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTCAACGATAGGAAATCAGTA</pcr_primer_p1>
		<pcr_primer_p2>ATATGCAATTACTGGAACAATTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GACTCAACGATAGGAAATCAGTACTCGCAGATCCTGCACTAGTTCCAGCAAGAGTCACCATAGCTGGATCACCTCCAAACGCAGCGATATTATCCTGGACCCATTGAAGAGCAAGAGTCTGATCCCACAATGCATAGTTTCCATTCGATACACCATCAGCAATGGTTAGAAAACCCATAGGACCTAGTCTGTAGTTCATGGTAACCAGGATAATATCCCTCTGTGGAATTGTTCCAGTAATTGCATAT</canonical_amplicon>
		<polymorphic_amplicon>GACTCAACGATAGGAAATCAGTACTCGCAGATCCTGCACTAGTTCCAGCAAGAGTCACCATAGCTGGATCACCTCCAAACGCAGCGATATTATCCTGGACCCATTGAAGAGCAAGAGTCTGATCCCACAATGCATAGTTTCCATTCGATACACCATCAGCAATGGTTAGAAAACCCATAGGACCTAGTCTGTARTTCATGGTAACCAGGATAATATCCCTCTGTGGAATTGTTCCAGTAATTGCATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38978</snp_id>
        <super_contig>c013401043.Contig1</super_contig>
        <contig_pos>22076</contig_pos>
        <strand>+</strand>
        <context>TATCCCTCTG[C/T]GGAATTGTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCATAGGACCTAGTCTGTAGTTCATGGTAACCAGGATAATATCCCTCTG</left_flank>
        <right_flank>GGAATTGTTCCAGTAATTGCATATCCATCCATGTAAGAAGTGTATCCTAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAAGGATCCTGGGCATGATACCAAGCAAACAAACTTTGTGAGTCTGAAAATCACGAAGTATTATCCTAAAGTGTTTTTTTTTTCAAAAAATTAAACCATTTCCAGCGTATCCCTTGGATTGAGCATACTGCAGTCCCACTGATGCTTCCACTCTCTGCGGTCGAATCGCAAAATTGCAGAAGGCAGTTCCAGACATTTGAATAGATCTTCGGAATAGTTCTGAATAAAATATCGCACTTTCAATATCATTTTTGAGTACTCACTGTTCGAATGAGGACTCAACGATAGGAAATCAGTACTCGCAGATCCTGCACTAGTTCCAGCAAGAGTCACCATAGCTGGATCACCTCCAAACGCAGCGATATTATCCTGGACCCATTGAAGAGCAAGAGTCTGATCCCACAATGCATAGTTTCCATTCGATACACCATCAGCAATGGTTAGAAAACCCATAGGACCTAGTCTGTAGTTCATGGTAACCAGGATAATATCCCTCTGTGGAATTGTTCCAGTAATTGCATATCCATCCATGTAAGAAGTGTATCCTATCTCGAATCCTCCTCCGTAAATGTAAACTAACACCGGTAATCCTTTGGGCTGAAAATAGGAGATCAAATGAAACACTCATAGGAAAAAAGTTTACGAATTCGGTCAAATTCCATCTCGGTGCAAAAACGTTTAATGTTAGGCAGTTGTCTTCTAAGAACGGGCAGGTTTTTGTGGCGGTTAGCTGAAAACACTGATTAACTTTTCTAGAGATACCGTAAAACTTGTATTAGAAAAACCCCCCGAAATTTAAGGGCTCCTTTAATTGAAGAAAAAAAAATACACGAAAAATATAAGGGCTGGCCCTTATATTAAAGGTTTTACGGCGAATCTTGAAATCTATTCTCACCCCGGAAAATTGTCCGGTTTGGGGACAGCCAGGACCATACTCATAACAATCTCTTGTCTCTGTCCATTTATCAAAAGGTACTGGTTTTCTGTATCTGAGATCTC</canonical>
            <polymorphic>GGAAGGATCCTGGGCATGATACCAAGCAAACAAACTTTGTGAGTCTGAAAATCACGAAGTATTATCCTAAAGTGTTTTTTTTTTCAAAAAATTAAACCATTTCCAGCGTATCCCTTGGATTGAGCATACTGCAGTCCCACTGATGCTTCCACTCTCTGCGGTCGAATCGCAAAATTGCAGAAGGCAGTTCCAGACATTTGAATAGATCTTCGGAATAGTTCTGAATAAAATATCGCACTTTCAATATCATTTTTGAGTACTCACTGTTCGAATGAGGACTCAACGATAGGAAATCAGTACTCGCAGATCCTGCACTAGTTCCAGCAAGAGTCACCATAGCTGGATCACCTCCAAACGCAGCGATATTATCCTGGACCCATTGAAGAGCAAGAGTCTGATCCCACAATGCATAGTTTCCATTCGATACACCATCAGCAATGGTTAGAAAACCCATAGGACCTAGTCTGTAGTTCATGGTAACCAGGATAATATCCCTCTGYGGAATTGTTCCAGTAATTGCATATCCATCCATGTAAGAAGTGTATCCTATCTCGAATCCTCCTCCGTAAATGTAAACTAACACCGGTAATCCTTTGGGCTGAAAATAGGAGATCAAATGAAACACTCATAGGAAAAAAGTTTACGAATTCGGTCAAATTCCATCTCGGTGCAAAAACGTTTAATGTTAGGCAGTTGTCTTCTAAGAACGGGCAGGTTTTTGTGGCGGTTAGCTGAAAACACTGATTAACTTTTCTAGAGATACCGTAAAACTTGTATTAGAAAAACCCCCCGAAATTTAAGGGCTCCTTTAATTGAAGAAAAAAAAATACACGAAAAATATAAGGGCTGGCCCTTATATTAAAGGTTTTACGGCGAATCTTGAAATCTATTCTCACCCCGGAAAATTGTCCGGTTTGGGGACAGCCAGGACCATACTCATAACAATCTCTTGTCTCTGTCCATTTATCAAAAGGTACTGGTTTTCTGTATCTGAGATCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>105 91 86 73 65 64 56 53 51 46 42 41 41 40 26 25 20 19 17 14 13 12</canonical_bands>
                <polymorphic_bands>114 105 91 86 65 64 56 53 51 46 42 41 40 26 25 20 19 17 14 13 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACTAGTTCCAGCAAGAGTCA</pcr_primer_p1>
		<pcr_primer_p2>AGGATTCGAGATAGGATACACTT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CACTAGTTCCAGCAAGAGTCACCATAGCTGGATCACCTCCAAACGCAGCGATATTATCCTGGACCCATTGAAGAGCAAGAGTCTGATCCCACAATGCATAGTTTCCATTCGATACACCATCAGCAATGGTTAGAAAACCCATAGGACCTAGTCTGTAGTTCATGGTAACCAGGATAATATCCCTCTGTGGAATTGTTCCAGTAATTGCATATCCATCCATGTAAGAAGTGTATCCTATCTCGAATCCT</canonical_amplicon>
		<polymorphic_amplicon>CACTAGTTCCAGCAAGAGTCACCATAGCTGGATCACCTCCAAACGCAGCGATATTATCCTGGACCCATTGAAGAGCAAGAGTCTGATCCCACAATGCATAGTTTCCATTCGATACACCATCAGCAATGGTTAGAAAACCCATAGGACCTAGTCTGTAGTTCATGGTAACCAGGATAATATCCCTCTGYGGAATTGTTCCAGTAATTGCATATCCATCCATGTAAGAAGTGTATCCTATCTCGAATCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38979</snp_id>
        <super_contig>c013401043.Contig1</super_contig>
        <contig_pos>22174</contig_pos>
        <strand>+</strand>
        <context>AATCCTTTGG[A/G]CTGAAAATAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATCTCGAATCCTCCTCCGTAAATGTAAACTAACACCGGTAATCCTTTGG</left_flank>
        <right_flank>CTGAAAATAGGAGATCAAATGAAACACTCATAGGAAAAAAGTTTACGAAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTCCAGCGTATCCCTTGGATTGAGCATACTGCAGTCCCACTGATGCTTCCACTCTCTGCGGTCGAATCGCAAAATTGCAGAAGGCAGTTCCAGACATTTGAATAGATCTTCGGAATAGTTCTGAATAAAATATCGCACTTTCAATATCATTTTTGAGTACTCACTGTTCGAATGAGGACTCAACGATAGGAAATCAGTACTCGCAGATCCTGCACTAGTTCCAGCAAGAGTCACCATAGCTGGATCACCTCCAAACGCAGCGATATTATCCTGGACCCATTGAAGAGCAAGAGTCTGATCCCACAATGCATAGTTTCCATTCGATACACCATCAGCAATGGTTAGAAAACCCATAGGACCTAGTCTGTAGTTCATGGTAACCAGGATAATATCCCTCTGTGGAATTGTTCCAGTAATTGCATATCCATCCATGTAAGAAGTGTATCCTATCTCGAATCCTCCTCCGTAAATGTAAACTAACACCGGTAATCCTTTGGGCTGAAAATAGGAGATCAAATGAAACACTCATAGGAAAAAAGTTTACGAATTCGGTCAAATTCCATCTCGGTGCAAAAACGTTTAATGTTAGGCAGTTGTCTTCTAAGAACGGGCAGGTTTTTGTGGCGGTTAGCTGAAAACACTGATTAACTTTTCTAGAGATACCGTAAAACTTGTATTAGAAAAACCCCCCGAAATTTAAGGGCTCCTTTAATTGAAGAAAAAAAAATACACGAAAAATATAAGGGCTGGCCCTTATATTAAAGGTTTTACGGCGAATCTTGAAATCTATTCTCACCCCGGAAAATTGTCCGGTTTGGGGACAGCCAGGACCATACTCATAACAATCTCTTGTCTCTGTCCATTTATCAAAAGGTACTGGTTTTCTGTATCTGAGATCTCCTATTGGCGGTTTTGCGAATGGAATCCCAAGTAGCCATCAACAATTTTTGAGCCCTGAAAGTATTTTTCAGTTTTAAAGTTTAGAATCTACACTTACA</canonical>
            <polymorphic>ATTTCCAGCGTATCCCTTGGATTGAGCATACTGCAGTCCCACTGATGCTTCCACTCTCTGCGGTCGAATCGCAAAATTGCAGAAGGCAGTTCCAGACATTTGAATAGATCTTCGGAATAGTTCTGAATAAAATATCGCACTTTCAATATCATTTTTGAGTACTCACTGTTCGAATGAGGACTCAACGATAGGAAATCAGTACTCGCAGATCCTGCACTAGTTCCAGCAAGAGTCACCATAGCTGGATCACCTCCAAACGCAGCGATATTATCCTGGACCCATTGAAGAGCAAGAGTCTGATCCCACAATGCATAGTTTCCATTCGATACACCATCAGCAATGGTTAGAAAACCCATAGGACCTAGTCTGTAGTTCATGGTAACCAGGATAATATCCCTCTGTGGAATTGTTCCAGTAATTGCATATCCATCCATGTAAGAAGTGTATCCTATCTCGAATCCTCCTCCGTAAATGTAAACTAACACCGGTAATCCTTTGGRCTGAAAATAGGAGATCAAATGAAACACTCATAGGAAAAAAGTTTACGAATTCGGTCAAATTCCATCTCGGTGCAAAAACGTTTAATGTTAGGCAGTTGTCTTCTAAGAACGGGCAGGTTTTTGTGGCGGTTAGCTGAAAACACTGATTAACTTTTCTAGAGATACCGTAAAACTTGTATTAGAAAAACCCCCCGAAATTTAAGGGCTCCTTTAATTGAAGAAAAAAAAATACACGAAAAATATAAGGGCTGGCCCTTATATTAAAGGTTTTACGGCGAATCTTGAAATCTATTCTCACCCCGGAAAATTGTCCGGTTTGGGGACAGCCAGGACCATACTCATAACAATCTCTTGTCTCTGTCCATTTATCAAAAGGTACTGGTTTTCTGTATCTGAGATCTCCTATTGGCGGTTTTGCGAATGGAATCCCAAGTAGCCATCAACAATTTTTGAGCCCTGAAAGTATTTTTCAGTTTTAAAGTTTAGAATCTACACTTACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>259 241 133 110 74 72 46 43 18 4</canonical_bands>
                <polymorphic_bands>392 241 110 74 72 46 43 18 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGTTCCAGTAATTGCATATC</pcr_primer_p1>
		<pcr_primer_p2>TTAATCAGTGTTTTCAGCTAACC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATTGTTCCAGTAATTGCATATCCATCCATGTAAGAAGTGTATCCTATCTCGAATCCTCCTCCGTAAATGTAAACTAACACCGGTAATCCTTTGGGCTGAAAATAGGAGATCAAATGAAACACTCATAGGAAAAAAGTTTACGAATTCGGTCAAATTCCATCTCGGTGCAAAAACGTTTAATGTTAGGCAGTTGTCTTCTAAGAACGGGCAGGTTTTTGTGGCGGTTAGCTGAAAACACTGATTAA</canonical_amplicon>
		<polymorphic_amplicon>AATTGTTCCAGTAATTGCATATCCATCCATGTAAGAAGTGTATCCTATCTCGAATCCTCCTCCGTAAATGTAAACTAACACCGGTAATCCTTTGGRCTGAAAATAGGAGATCAAATGAAACACTCATAGGAAAAAAGTTTACGAATTCGGTCAAATTCCATCTCGGTGCAAAAACGTTTAATGTTAGGCAGTTGTCTTCTAAGAACGGGCAGGTTTTTGTGGCGGTTAGCTGAAAACACTGATTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38980</snp_id>
        <super_contig>c013401043.Contig1</super_contig>
        <contig_pos>22254</contig_pos>
        <strand>+</strand>
        <context>GTGCAAAAAC[A/G]TTTAATGTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAGGAAAAAAGTTTACGAATTCGGTCAAATTCCATCTCGGTGCAAAAAC</left_flank>
        <right_flank>TTTAATGTTAGGCAGTTGTCTTCTAAGAACGGGCAGGTTTTTGTGGCGGT</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAGGCAGTTCCAGACATTTGAATAGATCTTCGGAATAGTTCTGAATAAAATATCGCACTTTCAATATCATTTTTGAGTACTCACTGTTCGAATGAGGACTCAACGATAGGAAATCAGTACTCGCAGATCCTGCACTAGTTCCAGCAAGAGTCACCATAGCTGGATCACCTCCAAACGCAGCGATATTATCCTGGACCCATTGAAGAGCAAGAGTCTGATCCCACAATGCATAGTTTCCATTCGATACACCATCAGCAATGGTTAGAAAACCCATAGGACCTAGTCTGTAGTTCATGGTAACCAGGATAATATCCCTCTGTGGAATTGTTCCAGTAATTGCATATCCATCCATGTAAGAAGTGTATCCTATCTCGAATCCTCCTCCGTAAATGTAAACTAACACCGGTAATCCTTTGGGCTGAAAATAGGAGATCAAATGAAACACTCATAGGAAAAAAGTTTACGAATTCGGTCAAATTCCATCTCGGTGCAAAAACGTTTAATGTTAGGCAGTTGTCTTCTAAGAACGGGCAGGTTTTTGTGGCGGTTAGCTGAAAACACTGATTAACTTTTCTAGAGATACCGTAAAACTTGTATTAGAAAAACCCCCCGAAATTTAAGGGCTCCTTTAATTGAAGAAAAAAAAATACACGAAAAATATAAGGGCTGGCCCTTATATTAAAGGTTTTACGGCGAATCTTGAAATCTATTCTCACCCCGGAAAATTGTCCGGTTTGGGGACAGCCAGGACCATACTCATAACAATCTCTTGTCTCTGTCCATTTATCAAAAGGTACTGGTTTTCTGTATCTGAGATCTCCTATTGGCGGTTTTGCGAATGGAATCCCAAGTAGCCATCAACAATTTTTGAGCCCTGAAAGTATTTTTCAGTTTTAAAGTTTAGAATCTACACTTACAAAAGTATAAATATTTCCTCTTATGGGACCACATGGTGCATTTAAAACTTGTGTATTTTTATCAGGAACCTTGTTACCTGC</canonical>
            <polymorphic>AGAAGGCAGTTCCAGACATTTGAATAGATCTTCGGAATAGTTCTGAATAAAATATCGCACTTTCAATATCATTTTTGAGTACTCACTGTTCGAATGAGGACTCAACGATAGGAAATCAGTACTCGCAGATCCTGCACTAGTTCCAGCAAGAGTCACCATAGCTGGATCACCTCCAAACGCAGCGATATTATCCTGGACCCATTGAAGAGCAAGAGTCTGATCCCACAATGCATAGTTTCCATTCGATACACCATCAGCAATGGTTAGAAAACCCATAGGACCTAGTCTGTAGTTCATGGTAACCAGGATAATATCCCTCTGTGGAATTGTTCCAGTAATTGCATATCCATCCATGTAAGAAGTGTATCCTATCTCGAATCCTCCTCCGTAAATGTAAACTAACACCGGTAATCCTTTGGGCTGAAAATAGGAGATCAAATGAAACACTCATAGGAAAAAAGTTTACGAATTCGGTCAAATTCCATCTCGGTGCAAAAACRTTTAATGTTAGGCAGTTGTCTTCTAAGAACGGGCAGGTTTTTGTGGCGGTTAGCTGAAAACACTGATTAACTTTTCTAGAGATACCGTAAAACTTGTATTAGAAAAACCCCCCGAAATTTAAGGGCTCCTTTAATTGAAGAAAAAAAAATACACGAAAAATATAAGGGCTGGCCCTTATATTAAAGGTTTTACGGCGAATCTTGAAATCTATTCTCACCCCGGAAAATTGTCCGGTTTGGGGACAGCCAGGACCATACTCATAACAATCTCTTGTCTCTGTCCATTTATCAAAAGGTACTGGTTTTCTGTATCTGAGATCTCCTATTGGCGGTTTTGCGAATGGAATCCCAAGTAGCCATCAACAATTTTTGAGCCCTGAAAGTATTTTTCAGTTTTAAAGTTTAGAATCTACACTTACAAAAGTATAAATATTTCCTCTTATGGGACCACATGGTGCATTTAAAACTTGTGTATTTTTATCAGGAACCTTGTTACCTGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAAAATAGGAGATCAAATGAA</pcr_primer_p1>
		<pcr_primer_p2>AGCCCTTATATTTTTCGTGTATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGAAAATAGGAGATCAAATGAAACACTCATAGGAAAAAAGTTTACGAATTCGGTCAAATTCCATCTCGGTGCAAAAACGTTTAATGTTAGGCAGTTGTCTTCTAAGAACGGGCAGGTTTTTGTGGCGGTTAGCTGAAAACACTGATTAACTTTTCTAGAGATACCGTAAAACTTGTATTAGAAAAACCCCCCGAAATTTAAGGGCTCCTTTAATTGAAGAAAAAAAAATACACGAAAAATATAAGGGCT</canonical_amplicon>
		<polymorphic_amplicon>CTGAAAATAGGAGATCAAATGAAACACTCATAGGAAAAAAGTTTACGAATTCGGTCAAATTCCATCTCGGTGCAAAAACRTTTAATGTTAGGCAGTTGTCTTCTAAGAACGGGCAGGTTTTTGTGGCGGTTAGCTGAAAACACTGATTAACTTTTCTAGAGATACCGTAAAACTTGTATTAGAAAAACCCCCCGAAATTTAAGGGCTCCTTTAATTGAAGAAAAAAAAATACACGAAAAATATAAGGGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38981</snp_id>
        <super_contig>c013401043.Contig1</super_contig>
        <contig_pos>24878</contig_pos>
        <strand>+</strand>
        <context>TCTGAAAAAA[A/T]TTTTTTCGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAACATTTTTCCTCGTCGAATGTCATCCAGTCATGACACATCTGAAAAAA</left_flank>
        <right_flank>TTTTTTCGATTAGTTTTGAAGAATAAAACCCACGACAGCGTAGTTTCCAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAATCAATAAGAACAAACTGTTTGAATGGGGACTCAATGCCAACATGTCAACACTAATCGCTCCAGCACTTCCTCCGGATATCGTCACATTGTTTCGGTCTCCACCAAATGACCCAATATGATCTTGAATCCATTGTAGTGCAAGCGTTTGATCCCACAGGCCATAATTTCCTTTTGCCACGTCATCTCCAGTAGTGAAAAATCCCAGCGCACCGACACGGTAGTTGATAGTAACAACCACTACATCTCGGAGTGGAATAGTTCCACTTAGCGAACGGTCATTGAGATAACCCGAGTATCCAATTTCAAAACCACCGCCATGGATGTATACCAAAACAGGTAATCCATTTGGCTGAAACCACAAGGAAATTATTTTGACCGAAATCTCGAAAGTCGTTACATACAAACTCATCAGATTTCCATCTCGGAGCAAAAACATTAAGGTTCAAACATTTTTCCTCGTCGAATGTCATCCAGTCATGACACATCTGAAAAAAATTTTTTCGATTAGTTTTGAAGAATAAAACCCACGACAGCGTAGTTTCCAGACTGTGGGCATCCAGGACCGTACGTGTAGCAATCGAGAGGTTCGGTCCATTTTTCAGCAGCCACAGGCTTTTCGAACCGAACAGGAGGTTTCGCGTATGGTATTCCAAGATAACCATCAACTATTTTCTCTCCCTGAAATTATTTTATAAAGTTTTAAACGATTTTATCAAACTAACATGTTTGTAGATGTTTCCTCGAATTGGTCCACAACTGGCATTTAAAACTTCATGGTTTTGTTCGGGCTCCAAATGAGAAAGAAACCCACCCATTATGAGAACAGCGTCAACAACACTGATAAAAAATCAAATGATATTTTTCTGTTGAGAAACGGCGCACTTATATATGAAACGAGACATAAACCACACAGAAAAAAGTGTGCCTGACAGACAAGAAAAAGATCAACAAAGTACAAATAAACAAGAAAGAGTGGAGAATTAGACAAGTGGACA</canonical>
            <polymorphic>TAAAATCAATAAGAACAAACTGTTTGAATGGGGACTCAATGCCAACATGTCAACACTAATCGCTCCAGCACTTCCTCCGGATATCGTCACATTGTTTCGGTCTCCACCAAATGACCCAATATGATCTTGAATCCATTGTAGTGCAAGCGTTTGATCCCACAGGCCATAATTTCCTTTTGCCACGTCATCTCCAGTAGTGAAAAATCCCAGCGCACCGACACGGTAGTTGATAGTAACAACCACTACATCTCGGAGTGGAATAGTTCCACTTAGCGAACGGTCATTGAGATAACCCGAGTATCCAATTTCAAAACCACCGCCATGGATGTATACCAAAACAGGTAATCCATTTGGCTGAAACCACAAGGAAATTATTTTGACCGAAATCTCGAAAGTCGTTACATACAAACTCATCAGATTTCCATCTCGGAGCAAAAACATTAAGGTTCAAACATTTTTCCTCGTCGAATGTCATCCAGTCATGACACATCTGAAAAAAWTTTTTTCGATTAGTTTTGAAGAATAAAACCCACGACAGCGTAGTTTCCAGACTGTGGGCATCCAGGACCGTACGTGTAGCAATCGAGAGGTTCGGTCCATTTTTCAGCAGCCACAGGCTTTTCGAACCGAACAGGAGGTTTCGCGTATGGTATTCCAAGATAACCATCAACTATTTTCTCTCCCTGAAATTATTTTATAAAGTTTTAAACGATTTTATCAAACTAACATGTTTGTAGATGTTTCCTCGAATTGGTCCACAACTGGCATTTAAAACTTCATGGTTTTGTTCGGGCTCCAAATGAGAAAGAAACCCACCCATTATGAGAACAGCGTCAACAACACTGATAAAAAATCAAATGATATTTTTCTGTTGAGAAACGGCGCACTTATATATGAAACGAGACATAAACCACACAGAAAAAAGTGTGCCTGACAGACAAGAAAAAGATCAACAAAGTACAAATAAACAAGAAAGAGTGGAGAATTAGACAAGTGGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>235 189 167 136 129 66 61 17</canonical_bands>
                <polymorphic_bands>318 235 167 136 66 61 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAACATTAAGGTTCAAACA</pcr_primer_p1>
		<pcr_primer_p2>GGAGAGAAAATAGTTGATGGTTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAAAAACATTAAGGTTCAAACATTTTTCCTCGTCGAATGTCATCCAGTCATGACACATCTGAAAAAAATTTTTTCGATTAGTTTTGAAGAATAAAACCCACGACAGCGTAGTTTCCAGACTGTGGGCATCCAGGACCGTACGTGTAGCAATCGAGAGGTTCGGTCCATTTTTCAGCAGCCACAGGCTTTTCGAACCGAACAGGAGGTTTCGCGTATGGTATTCCAAGATAACCATCAACTATTTTCTCTCC</canonical_amplicon>
		<polymorphic_amplicon>CAAAAACATTAAGGTTCAAACATTTTTCCTCGTCGAATGTCATCCAGTCATGACACATCTGAAAAAAWTTTTTTCGATTAGTTTTGAAGAATAAAACCCACGACAGCGTAGTTTCCAGACTGTGGGCATCCAGGACCGTACGTGTAGCAATCGAGAGGTTCGGTCCATTTTTCAGCAGCCACAGGCTTTTCGAACCGAACAGGAGGTTTCGCGTATGGTATTCCAAGATAACCATCAACTATTTTCTCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38982</snp_id>
        <super_contig>c013401043.Contig1</super_contig>
        <contig_pos>25190</contig_pos>
        <strand>+</strand>
        <context>GAGAAAGAAA[A/C]CCACCCATTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGGCATTTAAAACTTCATGGTTTTGTTCGGGCTCCAAATGAGAAAGAAA</left_flank>
        <right_flank>CCACCCATTATGAGAACAGCGTCAACAACACTGATAAAAAATCAAATGAT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCACCGCCATGGATGTATACCAAAACAGGTAATCCATTTGGCTGAAACCACAAGGAAATTATTTTGACCGAAATCTCGAAAGTCGTTACATACAAACTCATCAGATTTCCATCTCGGAGCAAAAACATTAAGGTTCAAACATTTTTCCTCGTCGAATGTCATCCAGTCATGACACATCTGAAAAAAATTTTTTCGATTAGTTTTGAAGAATAAAACCCACGACAGCGTAGTTTCCAGACTGTGGGCATCCAGGACCGTACGTGTAGCAATCGAGAGGTTCGGTCCATTTTTCAGCAGCCACAGGCTTTTCGAACCGAACAGGAGGTTTCGCGTATGGTATTCCAAGATAACCATCAACTATTTTCTCTCCCTGAAATTATTTTATAAAGTTTTAAACGATTTTATCAAACTAACATGTTTGTAGATGTTTCCTCGAATTGGTCCACAACTGGCATTTAAAACTTCATGGTTTTGTTCGGGCTCCAAATGAGAAAGAAACCCACCCATTATGAGAACAGCGTCAACAACACTGATAAAAAATCAAATGATATTTTTCTGTTGAGAAACGGCGCACTTATATATGAAACGAGACATAAACCACACAGAAAAAAGTGTGCCTGACAGACAAGAAAAAGATCAACAAAGTACAAATAAACAAGAAAGAGTGGAGAATTAGACAAGTGGACAGTTCATAGCGATGAAATTTTTTCGGTGTGTAGGTGAATATGTTGGAGTCGTCGAATTGAAATATAACGATGGTTTACGTCTTTCGATCACTCTTCATGTTTTCTCTCTCTCTCTCTCTGGGAGAAATTCACAATATTTATTCAAGTTTCTTACCTGATGTTTTCATAGATGTTTCCTCAAATCAGTCCAAAACTAGAATTTAGCAATTCTCCTTTTATTCAGGATTCATATAAGAGCAAAATAACCCACCCACAATATAAAATGGTATGAAAACAGCATTGATCCAAAATATCCAAAACTAAACGATTTCCT</canonical>
            <polymorphic>ACCACCGCCATGGATGTATACCAAAACAGGTAATCCATTTGGCTGAAACCACAAGGAAATTATTTTGACCGAAATCTCGAAAGTCGTTACATACAAACTCATCAGATTTCCATCTCGGAGCAAAAACATTAAGGTTCAAACATTTTTCCTCGTCGAATGTCATCCAGTCATGACACATCTGAAAAAAATTTTTTCGATTAGTTTTGAAGAATAAAACCCACGACAGCGTAGTTTCCAGACTGTGGGCATCCAGGACCGTACGTGTAGCAATCGAGAGGTTCGGTCCATTTTTCAGCAGCCACAGGCTTTTCGAACCGAACAGGAGGTTTCGCGTATGGTATTCCAAGATAACCATCAACTATTTTCTCTCCCTGAAATTATTTTATAAAGTTTTAAACGATTTTATCAAACTAACATGTTTGTAGATGTTTCCTCGAATTGGTCCACAACTGGCATTTAAAACTTCATGGTTTTGTTCGGGCTCCAAATGAGAAAGAAAMCCACCCATTATGAGAACAGCGTCAACAACACTGATAAAAAATCAAATGATATTTTTCTGTTGAGAAACGGCGCACTTATATATGAAACGAGACATAAACCACACAGAAAAAAGTGTGCCTGACAGACAAGAAAAAGATCAACAAAGTACAAATAAACAAGAAAGAGTGGAGAATTAGACAAGTGGACAGTTCATAGCGATGAAATTTTTTCGGTGTGTAGGTGAATATGTTGGAGTCGTCGAATTGAAATATAACGATGGTTTACGTCTTTCGATCACTCTTCATGTTTTCTCTCTCTCTCTCTCTGGGAGAAATTCACAATATTTATTCAAGTTTCTTACCTGATGTTTTCATAGATGTTTCCTCAAATCAGTCCAAAACTAGAATTTAGCAATTCTCCTTTTATTCAGGATTCATATAAGAGCAAAATAACCCACCCACAATATAAAATGGTATGAAAACAGCATTGATCCAAAATATCCAAAACTAAACGATTTCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACTGGCATTTAAAACTTCAT</pcr_primer_p1>
		<pcr_primer_p2>TGAACTGTCCACTTGTCTAATTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAACTGGCATTTAAAACTTCATGGTTTTGTTCGGGCTCCAAATGAGAAAGAAACCCACCCATTATGAGAACAGCGTCAACAACACTGATAAAAAATCAAATGATATTTTTCTGTTGAGAAACGGCGCACTTATATATGAAACGAGACATAAACCACACAGAAAAAAGTGTGCCTGACAGACAAGAAAAAGATCAACAAAGTACAAATAAACAAGAAAGAGTGGAGAATTAGACAAGTGGACAGTTCA</canonical_amplicon>
		<polymorphic_amplicon>CAACTGGCATTTAAAACTTCATGGTTTTGTTCGGGCTCCAAATGAGAAAGAAAMCCACCCATTATGAGAACAGCGTCAACAACACTGATAAAAAATCAAATGATATTTTTCTGTTGAGAAACGGCGCACTTATATATGAAACGAGACATAAACCACACAGAAAAAAGTGTGCCTGACAGACAAGAAAAAGATCAACAAAGTACAAATAAACAAGAAAGAGTGGAGAATTAGACAAGTGGACAGTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38983</snp_id>
        <super_contig>c013401043.Contig1</super_contig>
        <contig_pos>25347</contig_pos>
        <strand>+</strand>
        <context>TACAAATAAA[A/C]AAGAAAGAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAAAAGTGTGCCTGACAGACAAGAAAAAGATCAACAAAGTACAAATAAA</left_flank>
        <right_flank>AAGAAAGAGTGGAGAATTAGACAAGTGGACAGTTCATAGCGATGAAATTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCATCCAGTCATGACACATCTGAAAAAAATTTTTTCGATTAGTTTTGAAGAATAAAACCCACGACAGCGTAGTTTCCAGACTGTGGGCATCCAGGACCGTACGTGTAGCAATCGAGAGGTTCGGTCCATTTTTCAGCAGCCACAGGCTTTTCGAACCGAACAGGAGGTTTCGCGTATGGTATTCCAAGATAACCATCAACTATTTTCTCTCCCTGAAATTATTTTATAAAGTTTTAAACGATTTTATCAAACTAACATGTTTGTAGATGTTTCCTCGAATTGGTCCACAACTGGCATTTAAAACTTCATGGTTTTGTTCGGGCTCCAAATGAGAAAGAAACCCACCCATTATGAGAACAGCGTCAACAACACTGATAAAAAATCAAATGATATTTTTCTGTTGAGAAACGGCGCACTTATATATGAAACGAGACATAAACCACACAGAAAAAAGTGTGCCTGACAGACAAGAAAAAGATCAACAAAGTACAAATAAACAAGAAAGAGTGGAGAATTAGACAAGTGGACAGTTCATAGCGATGAAATTTTTTCGGTGTGTAGGTGAATATGTTGGAGTCGTCGAATTGAAATATAACGATGGTTTACGTCTTTCGATCACTCTTCATGTTTTCTCTCTCTCTCTCTCTGGGAGAAATTCACAATATTTATTCAAGTTTCTTACCTGATGTTTTCATAGATGTTTCCTCAAATCAGTCCAAAACTAGAATTTAGCAATTCTCCTTTTATTCAGGATTCATATAAGAGCAAAATAACCCACCCACAATATAAAATGGTATGAAAACAGCATTGATCCAAAATATCCAAAACTAAACGATTTCCTTTTGTGGAGAAGCGCGCACCCACTGGTATTACCGTAAAATCTCTAATAGAACGACACCCGGATCGTCCATTTTGAGCCTATATATCTCATTTCTTTTGAAAGATATCAAAAAGTGGTTAACTAGTAAAATGTTTATCAGGATATCAGCAACATTTTA</canonical>
            <polymorphic>TGTCATCCAGTCATGACACATCTGAAAAAAATTTTTTCGATTAGTTTTGAAGAATAAAACCCACGACAGCGTAGTTTCCAGACTGTGGGCATCCAGGACCGTACGTGTAGCAATCGAGAGGTTCGGTCCATTTTTCAGCAGCCACAGGCTTTTCGAACCGAACAGGAGGTTTCGCGTATGGTATTCCAAGATAACCATCAACTATTTTCTCTCCCTGAAATTATTTTATAAAGTTTTAAACGATTTTATCAAACTAACATGTTTGTAGATGTTTCCTCGAATTGGTCCACAACTGGCATTTAAAACTTCATGGTTTTGTTCGGGCTCCAAATGAGAAAGAAACCCACCCATTATGAGAACAGCGTCAACAACACTGATAAAAAATCAAATGATATTTTTCTGTTGAGAAACGGCGCACTTATATATGAAACGAGACATAAACCACACAGAAAAAAGTGTGCCTGACAGACAAGAAAAAGATCAACAAAGTACAAATAAAMAAGAAAGAGTGGAGAATTAGACAAGTGGACAGTTCATAGCGATGAAATTTTTTCGGTGTGTAGGTGAATATGTTGGAGTCGTCGAATTGAAATATAACGATGGTTTACGTCTTTCGATCACTCTTCATGTTTTCTCTCTCTCTCTCTCTGGGAGAAATTCACAATATTTATTCAAGTTTCTTACCTGATGTTTTCATAGATGTTTCCTCAAATCAGTCCAAAACTAGAATTTAGCAATTCTCCTTTTATTCAGGATTCATATAAGAGCAAAATAACCCACCCACAATATAAAATGGTATGAAAACAGCATTGATCCAAAATATCCAAAACTAAACGATTTCCTTTTGTGGAGAAGCGCGCACCCACTGGTATTACCGTAAAATCTCTAATAGAACGACACCCGGATCGTCCATTTTGAGCCTATATATCTCATTTCTTTTGAAAGATATCAAAAAGTGGTTAACTAGTAAAATGTTTATCAGGATATCAGCAACATTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATGAAACGAGACATAAACCAC</pcr_primer_p1>
		<pcr_primer_p2>ATATTGTGAATTTCTCCCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATATGAAACGAGACATAAACCACACAGAAAAAAGTGTGCCTGACAGACAAGAAAAAGATCAACAAAGTACAAATAAACAAGAAAGAGTGGAGAATTAGACAAGTGGACAGTTCATAGCGATGAAATTTTTTCGGTGTGTAGGTGAATATGTTGGAGTCGTCGAATTGAAATATAACGATGGTTTACGTCTTTCGATCACTCTTCATGTTTTCTCTCTCTCTCTCTCTGGGAGAAATTCACAATAT</canonical_amplicon>
		<polymorphic_amplicon>ATATGAAACGAGACATAAACCACACAGAAAAAAGTGTGCCTGACAGACAAGAAAAAGATCAACAAAGTACAAATAAAMAAGAAAGAGTGGAGAATTAGACAAGTGGACAGTTCATAGCGATGAAATTTTTTCGGTGTGTAGGTGAATATGTTGGAGTCGTCGAATTGAAATATAACGATGGTTTACGTCTTTCGATCACTCTTCATGTTTTCTCTCTCTCTCTCTCTGGGAGAAATTCACAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38984</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>5512</contig_pos>
        <strand>+</strand>
        <context>CACCAAGTCG[C/T]GAATCTCTCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCAATACGGTCGGGGAGTTTGCTCGTAGAGTCTTCCATCCACCAAGTCG</left_flank>
        <right_flank>GAATCTCTCATGAGTTCTTCCACTTGATCGAGGCACTCTCTCAATGTTAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTCCGTCTTCGCCTTTCAGAGTTCGAATCATAGAAGGGAAGTTGTGTCCTCTTACAATTTTTGGATTTCCATTGTTCGGACACAAATTGGATTCGACAGAAACAAAATATCCTGTATAGGTGTCAGCAGTTGAATCGAGCTTGATCTTACGCAAATCCAGGAAATCTCGAGATGAAATATATCCACGCATTGCTGGTGCACTGACCGAATAGTACAAATCGGTAGCACTGTCTAGATGAGCAATCATCTTTCCTTCGATTACCTAAATTAAATAAATGTTGTTCATATGAATAAAAAATTTTATTGAAAAATGTGTTTTTTTTCATTTCACGACACTAGCTCACCTGGGTGTTCCACTTGAGCATATCTTTCCAAGCAATGTTGAAAAGAACCAAAGCTGGGAACTTGTCGAACTCCGCTTTAACCAAAAAGTAATTGTCAGGACCTTGCAATACGGTCGGGGAGTTTGCTCGTAGAGTCTTCCATCCACCAAGTCGCGAATCTCTCATGAGTTCTTCCACTTGATCGAGGCACTCTCTCAATGTTATTTCGAAAAGTCTTTTTGTGTCTGGCGGTACCAGAAGACGTGATCGTGCTTCTTCATCTGACGAGAATTCGGCGGCGCTTCGAAATTCATCATAATCAGATGCGATAAAAACTCCAGAAGAGACACGAGACGGAACGGCCGTCTGCGTTTCTGATTGATTTCCGGAATTTTGCTGACGTCGCCCACGACGATGTCGATAACTGCAACAACTTTTCTGGGTGCTTCCGCAAAAAAGGAAGATTTAAATTAAGGGTTTTTCTTTCGAAAATCGAGTTGATAAAATACAAAAGTTCAGACTTTTATAAGAACTTTCATGTTTTTTAAATAGTTTTTTTTTTCATACTTCGAACGCGTTTCATCGTCTGTTGACAACTCCGGATTATCGGCCCTTCAAGATCTCGTCGAGCATCTGAAATCTTCGAAATTAATAAAGAATCCATAGTCAAATAAT</canonical>
            <polymorphic>AACTCCGTCTTCGCCTTTCAGAGTTCGAATCATAGAAGGGAAGTTGTGTCCTCTTACAATTTTTGGATTTCCATTGTTCGGACACAAATTGGATTCGACAGAAACAAAATATCCTGTATAGGTGTCAGCAGTTGAATCGAGCTTGATCTTACGCAAATCCAGGAAATCTCGAGATGAAATATATCCACGCATTGCTGGTGCACTGACCGAATAGTACAAATCGGTAGCACTGTCTAGATGAGCAATCATCTTTCCTTCGATTACCTAAATTAAATAAATGTTGTTCATATGAATAAAAAATTTTATTGAAAAATGTGTTTTTTTTCATTTCACGACACTAGCTCACCTGGGTGTTCCACTTGAGCATATCTTTCCAAGCAATGTTGAAAAGAACCAAAGCTGGGAACTTGTCGAACTCCGCTTTAACCAAAAAGTAATTGTCAGGACCTTGCAATACGGTCGGGGAGTTTGCTCGTAGAGTCTTCCATCCACCAAGTCGYGAATCTCTCATGAGTTCTTCCACTTGATCGAGGCACTCTCTCAATGTTATTTCGAAAAGTCTTTTTGTGTCTGGCGGTACCAGAAGACGTGATCGTGCTTCTTCATCTGACGAGAATTCGGCGGCGCTTCGAAATTCATCATAATCAGATGCGATAAAAACTCCAGAAGAGACACGAGACGGAACGGCCGTCTGCGTTTCTGATTGATTTCCGGAATTTTGCTGACGTCGCCCACGACGATGTCGATAACTGCAACAACTTTTCTGGGTGCTTCCGCAAAAAAGGAAGATTTAAATTAAGGGTTTTTCTTTCGAAAATCGAGTTGATAAAATACAAAAGTTCAGACTTTTATAAGAACTTTCATGTTTTTTAAATAGTTTTTTTTTTCATACTTCGAACGCGTTTCATCGTCTGTTGACAACTCCGGATTATCGGCCCTTCAAGATCTCGTCGAGCATCTGAAATCTTCGAAATTAATAAAGAATCCATAGTCAAATAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>499 401 100</canonical_bands>
                <polymorphic_bands>900 100</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGCGA</site>
                <isoschizomers>
                    <enzyme>Bsp68I</enzyme>
                    <enzyme>NruI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTTAACCAAAAAGTAATTGTC</pcr_primer_p1>
		<pcr_primer_p2>AGTTTTTATCGCATCTGATTATG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GCTTTAACCAAAAAGTAATTGTCAGGACCTTGCAATACGGTCGGGGAGTTTGCTCGTAGAGTCTTCCATCCACCAAGTCGCGAATCTCTCATGAGTTCTTCCACTTGATCGAGGCACTCTCTCAATGTTATTTCGAAAAGTCTTTTTGTGTCTGGCGGTACCAGAAGACGTGATCGTGCTTCTTCATCTGACGAGAATTCGGCGGCGCTTCGAAATTCATCATAATCAGATGCGATAAAAACT</canonical_amplicon>
		<polymorphic_amplicon>GCTTTAACCAAAAAGTAATTGTCAGGACCTTGCAATACGGTCGGGGAGTTTGCTCGTAGAGTCTTCCATCCACCAAGTCGYGAATCTCTCATGAGTTCTTCCACTTGATCGAGGCACTCTCTCAATGTTATTTCGAAAAGTCTTTTTGTGTCTGGCGGTACCAGAAGACGTGATCGTGCTTCTTCATCTGACGAGAATTCGGCGGCGCTTCGAAATTCATCATAATCAGATGCGATAAAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38985</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>5578</contig_pos>
        <strand>+</strand>
        <context>AAAGTCTTTT[C/T]GTGTCTGGCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTCCACTTGATCGAGGCACTCTCTCAATGTTATTTCGAAAAGTCTTTT</left_flank>
        <right_flank>GTGTCTGGCGGTACCAGAAGACGTGATCGTGCTTCTTCATCTGACGAGAA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCCATTGTTCGGACACAAATTGGATTCGACAGAAACAAAATATCCTGTATAGGTGTCAGCAGTTGAATCGAGCTTGATCTTACGCAAATCCAGGAAATCTCGAGATGAAATATATCCACGCATTGCTGGTGCACTGACCGAATAGTACAAATCGGTAGCACTGTCTAGATGAGCAATCATCTTTCCTTCGATTACCTAAATTAAATAAATGTTGTTCATATGAATAAAAAATTTTATTGAAAAATGTGTTTTTTTTCATTTCACGACACTAGCTCACCTGGGTGTTCCACTTGAGCATATCTTTCCAAGCAATGTTGAAAAGAACCAAAGCTGGGAACTTGTCGAACTCCGCTTTAACCAAAAAGTAATTGTCAGGACCTTGCAATACGGTCGGGGAGTTTGCTCGTAGAGTCTTCCATCCACCAAGTCGCGAATCTCTCATGAGTTCTTCCACTTGATCGAGGCACTCTCTCAATGTTATTTCGAAAAGTCTTTTTGTGTCTGGCGGTACCAGAAGACGTGATCGTGCTTCTTCATCTGACGAGAATTCGGCGGCGCTTCGAAATTCATCATAATCAGATGCGATAAAAACTCCAGAAGAGACACGAGACGGAACGGCCGTCTGCGTTTCTGATTGATTTCCGGAATTTTGCTGACGTCGCCCACGACGATGTCGATAACTGCAACAACTTTTCTGGGTGCTTCCGCAAAAAAGGAAGATTTAAATTAAGGGTTTTTCTTTCGAAAATCGAGTTGATAAAATACAAAAGTTCAGACTTTTATAAGAACTTTCATGTTTTTTAAATAGTTTTTTTTTTCATACTTCGAACGCGTTTCATCGTCTGTTGACAACTCCGGATTATCGGCCCTTCAAGATCTCGTCGAGCATCTGAAATCTTCGAAATTAATAAAGAATCCATAGTCAAATAATCTCTTACATATTCGTTCTCTTGGTAATATTTGGAAAGGCATCAAATAAAATTCTGACCAACAGAGT</canonical>
            <polymorphic>ATTTCCATTGTTCGGACACAAATTGGATTCGACAGAAACAAAATATCCTGTATAGGTGTCAGCAGTTGAATCGAGCTTGATCTTACGCAAATCCAGGAAATCTCGAGATGAAATATATCCACGCATTGCTGGTGCACTGACCGAATAGTACAAATCGGTAGCACTGTCTAGATGAGCAATCATCTTTCCTTCGATTACCTAAATTAAATAAATGTTGTTCATATGAATAAAAAATTTTATTGAAAAATGTGTTTTTTTTCATTTCACGACACTAGCTCACCTGGGTGTTCCACTTGAGCATATCTTTCCAAGCAATGTTGAAAAGAACCAAAGCTGGGAACTTGTCGAACTCCGCTTTAACCAAAAAGTAATTGTCAGGACCTTGCAATACGGTCGGGGAGTTTGCTCGTAGAGTCTTCCATCCACCAAGTCGCGAATCTCTCATGAGTTCTTCCACTTGATCGAGGCACTCTCTCAATGTTATTTCGAAAAGTCTTTTYGTGTCTGGCGGTACCAGAAGACGTGATCGTGCTTCTTCATCTGACGAGAATTCGGCGGCGCTTCGAAATTCATCATAATCAGATGCGATAAAAACTCCAGAAGAGACACGAGACGGAACGGCCGTCTGCGTTTCTGATTGATTTCCGGAATTTTGCTGACGTCGCCCACGACGATGTCGATAACTGCAACAACTTTTCTGGGTGCTTCCGCAAAAAAGGAAGATTTAAATTAAGGGTTTTTCTTTCGAAAATCGAGTTGATAAAATACAAAAGTTCAGACTTTTATAAGAACTTTCATGTTTTTTAAATAGTTTTTTTTTTCATACTTCGAACGCGTTTCATCGTCTGTTGACAACTCCGGATTATCGGCCCTTCAAGATCTCGTCGAGCATCTGAAATCTTCGAAATTAATAAAGAATCCATAGTCAAATAATCTCTTACATATTCGTTCTCTTGGTAATATTTGGAAAGGCATCAAATAAAATTCTGACCAACAGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTTAACCAAAAAGTAATTGTC</pcr_primer_p1>
		<pcr_primer_p2>AGTTTTTATCGCATCTGATTATG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>GCTTTAACCAAAAAGTAATTGTCAGGACCTTGCAATACGGTCGGGGAGTTTGCTCGTAGAGTCTTCCATCCACCAAGTCGCGAATCTCTCATGAGTTCTTCCACTTGATCGAGGCACTCTCTCAATGTTATTTCGAAAAGTCTTTTTGTGTCTGGCGGTACCAGAAGACGTGATCGTGCTTCTTCATCTGACGAGAATTCGGCGGCGCTTCGAAATTCATCATAATCAGATGCGATAAAAACT</canonical_amplicon>
		<polymorphic_amplicon>GCTTTAACCAAAAAGTAATTGTCAGGACCTTGCAATACGGTCGGGGAGTTTGCTCGTAGAGTCTTCCATCCACCAAGTCGCGAATCTCTCATGAGTTCTTCCACTTGATCGAGGCACTCTCTCAATGTTATTTCGAAAAGTCTTTTYGTGTCTGGCGGTACCAGAAGACGTGATCGTGCTTCTTCATCTGACGAGAATTCGGCGGCGCTTCGAAATTCATCATAATCAGATGCGATAAAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38986</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>70077</contig_pos>
        <strand>+</strand>
        <context>ATTTGTGGTT[A/G]AAAAAAACTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGACGGCCCGTCGGTCTTCCTTCGGCTTGGGGGTGGAGCATTTGTGGTT</left_flank>
        <right_flank>AAAAAAACTTTACTGCCACCTGTTGCAGGAATGATTGTGAGGGGAAAGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTTGAAGCGTTCCGGTGCTCCTTGATTCCTGAAATCTCTGTTTAAAGCACCAGGAGCATCGGTTTTTGATTGTGAAGAATATTCTTGTAAAAGGAGAGTAGCGTGTGAAAATATTCGAAGGGTAGACAATTTTGTGTATTAAGAGTCCTAATGCGGTCACCAACCAAGCCTCAGATTCCAACTTCTGTAGAGATACTTTCTCTAGAATATGAAATTTATACTGTGATAAAAAGTAATTTTTTACCAAATGTCTCATTCTGCGAAAATTCGGTCCGCCAAACAGAGCGCCCTTCGCCTGTCATCAAGCAGGCGTTCAACAACCTATTTTTGAGATTCAATCATCATTCTATGATCTAGTGGGTGTGTCAAATTTTGTTTTCTGGCTATCGTTCAACCCAAATTTTCAAGTCGGTTTTCCGAGTGATTCCGATTGTCCGTCAACGGTCGTAGACGGCCCGTCGGTCTTCCTTCGGCTTGGGGGTGGAGCATTTGTGGTTAAAAAAAACTTTACTGCCACCTGTTGCAGGAATGATTGTGAGGGGAAAGATCATGGTTTTCGTTTCCGGATGTAAAACGTTTCCGCGAAGTTATAGTCCATATAAAACTTTTCTCCAGTTTCCGATTCTACACTTCTCTCGATGAGGCTGTTTATTTTAGTTTGGATTTGTGTTGTTTCTGGTATCATTTCATTCACTTTTTTCAAATGACTCATTAATTTGTTCAGTGACGAGCATTGTCTTCGATGATGACACACATTCAAGCTCTAGCTCTGATGAGTCTTCATATTCATCTGGGCATCATGGGGGTCATGGAAGTCATGGGCATCATGGAAATCATGGAAATCATGGAAATCATGGAAATCATGGAAATCATGGAGGAAGACCTCCAAGACCTCCTCCAAGGCCAACGTCGAAATGCGAAGACGGATGGACAAGAGTCAAAAGACAAGGTGGTGGATGGTGTGTGAAGATTTTCGAAGGTCAGACCAATCAACCACA</canonical>
            <polymorphic>TCTTTGAAGCGTTCCGGTGCTCCTTGATTCCTGAAATCTCTGTTTAAAGCACCAGGAGCATCGGTTTTTGATTGTGAAGAATATTCTTGTAAAAGGAGAGTAGCGTGTGAAAATATTCGAAGGGTAGACAATTTTGTGTATTAAGAGTCCTAATGCGGTCACCAACCAAGCCTCAGATTCCAACTTCTGTAGAGATACTTTCTCTAGAATATGAAATTTATACTGTGATAAAAAGTAATTTTTTACCAAATGTCTCATTCTGCGAAAATTCGGTCCGCCAAACAGAGCGCCCTTCGCCTGTCATCAAGCAGGCGTTCAACAACCTATTTTTGAGATTCAATCATCATTCTATGATCTAGTGGGTGTGTCAAATTTTGTTTTCTGGCTATCGTTCAACCCAAATTTTCAAGTCGGTTTTCCGAGTGATTCCGATTGTCCGTCAACGGTCGTAGACGGCCCGTCGGTCTTCCTTCGGCTTGGGGGTGGAGCATTTGTGGTTRAAAAAAACTTTACTGCCACCTGTTGCAGGAATGATTGTGAGGGGAAAGATCATGGTTTTCGTTTCCGGATGTAAAACGTTTCCGCGAAGTTATAGTCCATATAAAACTTTTCTCCAGTTTCCGATTCTACACTTCTCTCGATGAGGCTGTTTATTTTAGTTTGGATTTGTGTTGTTTCTGGTATCATTTCATTCACTTTTTTCAAATGACTCATTAATTTGTTCAGTGACGAGCATTGTCTTCGATGATGACACACATTCAAGCTCTAGCTCTGATGAGTCTTCATATTCATCTGGGCATCATGGGGGTCATGGAAGTCATGGGCATCATGGAAATCATGGAAATCATGGAAATCATGGAAATCATGGAAATCATGGAGGAAGACCTCCAAGACCTCCTCCAAGGCCAACGTCGAAATGCGAAGACGGATGGACAAGAGTCAAAAGACAAGGTGGTGGATGGTGTGTGAAGATTTTCGAAGGTCAGACCAATCAACCACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>357 286 216 97 44</canonical_bands>
                <polymorphic_bands>573 286 97 44</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAATTTTGTTTTCTGGCTAT</pcr_primer_p1>
		<pcr_primer_p2>CTGGAGAAAAGTTTTATATGGACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAAATTTTGTTTTCTGGCTATCGTTCAACCCAAATTTTCAAGTCGGTTTTCCGAGTGATTCCGATTGTCCGTCAACGGTCGTAGACGGCCCGTCGGTCTTCCTTCGGCTTGGGGGTGGAGCATTTGTGGTTAAAAAAAACTTTACTGCCACCTGTTGCAGGAATGATTGTGAGGGGAAAGATCATGGTTTTCGTTTCCGGATGTAAAACGTTTCCGCGAAGTTATAGTCCATATAAAACTTTTCTCCAG</canonical_amplicon>
		<polymorphic_amplicon>TCAAATTTTGTTTTCTGGCTATCGTTCAACCCAAATTTTCAAGTCGGTTTTCCGAGTGATTCCGATTGTCCGTCAACGGTCGTAGACGGCCCGTCGGTCTTCCTTCGGCTTGGGGGTGGAGCATTTGTGGTTRAAAAAAACTTTACTGCCACCTGTTGCAGGAATGATTGTGAGGGGAAAGATCATGGTTTTCGTTTCCGGATGTAAAACGTTTCCGCGAAGTTATAGTCCATATAAAACTTTTCTCCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38987</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>70276</contig_pos>
        <strand>+</strand>
        <context>TCATTCACTT[A/T]TTTCAAATGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTTATTTTAGTTTGGATTTGTGTTGTTTCTGGTATCATTTCATTCACTT</left_flank>
        <right_flank>TTTCAAATGACTCATTAATTTGTTCAGTGACGAGCATTGTCTTCGATGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTCTAGAATATGAAATTTATACTGTGATAAAAAGTAATTTTTTACCAAATGTCTCATTCTGCGAAAATTCGGTCCGCCAAACAGAGCGCCCTTCGCCTGTCATCAAGCAGGCGTTCAACAACCTATTTTTGAGATTCAATCATCATTCTATGATCTAGTGGGTGTGTCAAATTTTGTTTTCTGGCTATCGTTCAACCCAAATTTTCAAGTCGGTTTTCCGAGTGATTCCGATTGTCCGTCAACGGTCGTAGACGGCCCGTCGGTCTTCCTTCGGCTTGGGGGTGGAGCATTTGTGGTTAAAAAAAACTTTACTGCCACCTGTTGCAGGAATGATTGTGAGGGGAAAGATCATGGTTTTCGTTTCCGGATGTAAAACGTTTCCGCGAAGTTATAGTCCATATAAAACTTTTCTCCAGTTTCCGATTCTACACTTCTCTCGATGAGGCTGTTTATTTTAGTTTGGATTTGTGTTGTTTCTGGTATCATTTCATTCACTTTTTTCAAATGACTCATTAATTTGTTCAGTGACGAGCATTGTCTTCGATGATGACACACATTCAAGCTCTAGCTCTGATGAGTCTTCATATTCATCTGGGCATCATGGGGGTCATGGAAGTCATGGGCATCATGGAAATCATGGAAATCATGGAAATCATGGAAATCATGGAAATCATGGAGGAAGACCTCCAAGACCTCCTCCAAGGCCAACGTCGAAATGCGAAGACGGATGGACAAGAGTCAAAAGACAAGGTGGTGGATGGTGTGTGAAGATTTTCGAAGGTCAGACCAATCAACCACAATCAGAAGCAATTTGCAATTCAAATGGAGCAACATTATCTGGAGTCGAAAGTCAAGAGGAACGACAAACTGTAGCAGAATTGGGGAGGACATATATGACAACAAGGACAGCTTGGAAGCAAGGATCATTGAGATTTGGCATTCAGCGAGGGGATGTTAACAGTGTAACAGTCTGAAAATCATTTGAAGCAGATTTGAAA</canonical>
            <polymorphic>TTCTCTAGAATATGAAATTTATACTGTGATAAAAAGTAATTTTTTACCAAATGTCTCATTCTGCGAAAATTCGGTCCGCCAAACAGAGCGCCCTTCGCCTGTCATCAAGCAGGCGTTCAACAACCTATTTTTGAGATTCAATCATCATTCTATGATCTAGTGGGTGTGTCAAATTTTGTTTTCTGGCTATCGTTCAACCCAAATTTTCAAGTCGGTTTTCCGAGTGATTCCGATTGTCCGTCAACGGTCGTAGACGGCCCGTCGGTCTTCCTTCGGCTTGGGGGTGGAGCATTTGTGGTTAAAAAAAACTTTACTGCCACCTGTTGCAGGAATGATTGTGAGGGGAAAGATCATGGTTTTCGTTTCCGGATGTAAAACGTTTCCGCGAAGTTATAGTCCATATAAAACTTTTCTCCAGTTTCCGATTCTACACTTCTCTCGATGAGGCTGTTTATTTTAGTTTGGATTTGTGTTGTTTCTGGTATCATTTCATTCACTTWTTTCAAATGACTCATTAATTTGTTCAGTGACGAGCATTGTCTTCGATGATGACACACATTCAAGCTCTAGCTCTGATGAGTCTTCATATTCATCTGGGCATCATGGGGGTCATGGAAGTCATGGGCATCATGGAAATCATGGAAATCATGGAAATCATGGAAATCATGGAAATCATGGAGGAAGACCTCCAAGACCTCCTCCAAGGCCAACGTCGAAATGCGAAGACGGATGGACAAGAGTCAAAAGACAAGGTGGTGGATGGTGTGTGAAGATTTTCGAAGGTCAGACCAATCAACCACAATCAGAAGCAATTTGCAATTCAAATGGAGCAACATTATCTGGAGTCGAAAGTCAAGAGGAACGACAAACTGTAGCAGAATTGGGGAGGACATATATGACAACAAGGACAGCTTGGAAGCAAGGATCATTGAGATTTGGCATTCAGCGAGGGGATGTTAACAGTGTAACAGTCTGAAAATCATTTGAAGCAGATTTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTTCCGATTCTACACTTCTCT</pcr_primer_p1>
		<pcr_primer_p2>ATTTCCATGATTTCCATGATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGTTTCCGATTCTACACTTCTCTCGATGAGGCTGTTTATTTTAGTTTGGATTTGTGTTGTTTCTGGTATCATTTCATTCACTTTTTTCAAATGACTCATTAATTTGTTCAGTGACGAGCATTGTCTTCGATGATGACACACATTCAAGCTCTAGCTCTGATGAGTCTTCATATTCATCTGGGCATCATGGGGGTCATGGAAGTCATGGGCATCATGGAAATCATGGAAATCATGGAAAT</canonical_amplicon>
		<polymorphic_amplicon>AGTTTCCGATTCTACACTTCTCTCGATGAGGCTGTTTATTTTAGTTTGGATTTGTGTTGTTTCTGGTATCATTTCATTCACTTWTTTCAAATGACTCATTAATTTGTTCAGTGACGAGCATTGTCTTCGATGATGACACACATTCAAGCTCTAGCTCTGATGAGTCTTCATATTCATCTGGGCATCATGGGGGTCATGGAAGTCATGGGCATCATGGAAATCATGGAAATCATGGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38989</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>79965</contig_pos>
        <strand>+</strand>
        <context>TACTTTTCCT[A/T]ATATCCCATG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCTTTAATATGTAAATTTATCATTGTTGGAAACCAAAAGTTACTTTTCCT</left_flank>
        <right_flank>ATATCCCATGATGGCCCCTTTAATTCTCCTTCAAAAGTTGCCGACTGGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGATTTTTCCATTGCCAGTGATTTCTCACGTTCGCTGGAGCGCGTTTTCCGACCAGGTTCTTTGAAATAGCGTGCAAACGCAGAAAAAATTCCGAAATCCTTGTAAACGCCGTCAAGAATGCAACAGAGGGTCTCGGAAATCCTAGGCCAAAGCTACGGTGTGCGCTGTTTTTTTTTGCGATTTTTTACAATTTTTCGGTTTCCTGTCGTTTGTTCTGTATTTTTCGAAAATAATTGAATTATTAAGTAGAACACTCGATGAAGAGATCAAAAAAGTCTCGTAGACCTCACAAATGACAGAAAGAATTGCATGAAAACAACTTGGACGAGAATTGAGAGCTCGAGTTCGATTTTGAACATTTGCTATAACTTTTTCGAAGTAATATTAAGGAAATACATGATTTTGAGAACATTTTAAAAATACAGAAAAATTAAGCCGGAGTCCCCCTTTAATATGTAAATTTATCATTGTTGGAAACCAAAAGTTACTTTTCCTTATATCCCATGATGGCCCCTTTAATTCTCCTTCAAAAGTTGCCGACTGGGTTATTACGATGAAAAACTTGTGGGATCTTATTAGTTCGATTATTTTGGACTTTAAACAATAGGATGTAGTTTTACAGTCCATTTGTGTTGACCGGAAAAGGTACTTTAGTCGAATCTAGAAAAAAGAAAAACGGAAAGTAATACGAACATATTTTTCATGTAGTCCATCGAAACATGAATTTCTTTTCAGGACGCCCGAGAACTCATTTTGTATGCACCAACAATTTTTATTCTCTCTTTTGGGTTCAATTCGATTTTAAAAATTTAATGGAAAAAGATATAAGCCAGGAGAACAACTCTCTGGAAAAAAAGAATGATTCATGTTAGTTTTTTTTCTAAGTCCACTTTTGTTTAATTCAAAATTCACACGTAACTAGTCGAGCAGACAGAAATTGACAGATTGACTAGACGAAATAAAATTCAGATTTTTTGGAGAACTTGGATGAAAACT</canonical>
            <polymorphic>TTTCGATTTTTCCATTGCCAGTGATTTCTCACGTTCGCTGGAGCGCGTTTTCCGACCAGGTTCTTTGAAATAGCGTGCAAACGCAGAAAAAATTCCGAAATCCTTGTAAACGCCGTCAAGAATGCAACAGAGGGTCTCGGAAATCCTAGGCCAAAGCTACGGTGTGCGCTGTTTTTTTTTGCGATTTTTTACAATTTTTCGGTTTCCTGTCGTTTGTTCTGTATTTTTCGAAAATAATTGAATTATTAAGTAGAACACTCGATGAAGAGATCAAAAAAGTCTCGTAGACCTCACAAATGACAGAAAGAATTGCATGAAAACAACTTGGACGAGAATTGAGAGCTCGAGTTCGATTTTGAACATTTGCTATAACTTTTTCGAAGTAATATTAAGGAAATACATGATTTTGAGAACATTTTAAAAATACAGAAAAATTAAGCCGGAGTCCCCCTTTAATATGTAAATTTATCATTGTTGGAAACCAAAAGTTACTTTTCCTWATATCCCATGATGGCCCCTTTAATTCTCCTTCAAAAGTTGCCGACTGGGTTATTACGATGAAAAACTTGTGGGATCTTATTAGTTCGATTATTTTGGACTTTAAACAATAGGATGTAGTTTTACAGTCCATTTGTGTTGACCGGAAAAGGTACTTTAGTCGAATCTAGAAAAAAGAAAAACGGAAAGTAATACGAACATATTTTTCATGTAGTCCATCGAAACATGAATTTCTTTTCAGGACGCCCGAGAACTCATTTTGTATGCACCAACAATTTTTATTCTCTCTTTTGGGTTCAATTCGATTTTAAAAATTTAATGGAAAAAGATATAAGCCAGGAGAACAACTCTCTGGAAAAAAAGAATGATTCATGTTAGTTTTTTTTCTAAGTCCACTTTTGTTTAATTCAAAATTCACACGTAACTAGTCGAGCAGACAGAAATTGACAGATTGACTAGACGAAATAAAATTCAGATTTTTTGGAGAACTTGGATGAAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAGTCCCCCTTTAATATGT</pcr_primer_p1>
		<pcr_primer_p2>CGTATTACTTTCCGTTTTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GGAGTCCCCCTTTAATATGTAAATTTATCATTGTTGGAAACCAAAAGTTACTTTTCCTTATATCCCATGATGGCCCCTTTAATTCTCCTTCAAAAGTTGCCGACTGGGTTATTACGATGAAAAACTTGTGGGATCTTATTAGTTCGATTATTTTGGACTTTAAACAATAGGATGTAGTTTTACAGTCCATTTGTGTTGACCGGAAAAGGTACTTTAGTCGAATCTAGAAAAAAGAAAAACGGAAAGTAATACG</canonical_amplicon>
		<polymorphic_amplicon>GGAGTCCCCCTTTAATATGTAAATTTATCATTGTTGGAAACCAAAAGTTACTTTTCCTWATATCCCATGATGGCCCCTTTAATTCTCCTTCAAAAGTTGCCGACTGGGTTATTACGATGAAAAACTTGTGGGATCTTATTAGTTCGATTATTTTGGACTTTAAACAATAGGATGTAGTTTTACAGTCCATTTGTGTTGACCGGAAAAGGTACTTTAGTCGAATCTAGAAAAAAGAAAAACGGAAAGTAATACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38990</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>80342</contig_pos>
        <strand>+</strand>
        <context>TTCATGTTAG[A/G]TTTTTTTCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATATAAGCCAGGAGAACAACTCTCTGGAAAAAAAGAATGATTCATGTTAG</left_flank>
        <right_flank>TTTTTTTCTAAGTCCACTTTTGTTTAATTCAAAATTCACACGTAACTAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGAAGTAATATTAAGGAAATACATGATTTTGAGAACATTTTAAAAATACAGAAAAATTAAGCCGGAGTCCCCCTTTAATATGTAAATTTATCATTGTTGGAAACCAAAAGTTACTTTTCCTTATATCCCATGATGGCCCCTTTAATTCTCCTTCAAAAGTTGCCGACTGGGTTATTACGATGAAAAACTTGTGGGATCTTATTAGTTCGATTATTTTGGACTTTAAACAATAGGATGTAGTTTTACAGTCCATTTGTGTTGACCGGAAAAGGTACTTTAGTCGAATCTAGAAAAAAGAAAAACGGAAAGTAATACGAACATATTTTTCATGTAGTCCATCGAAACATGAATTTCTTTTCAGGACGCCCGAGAACTCATTTTGTATGCACCAACAATTTTTATTCTCTCTTTTGGGTTCAATTCGATTTTAAAAATTTAATGGAAAAAGATATAAGCCAGGAGAACAACTCTCTGGAAAAAAAGAATGATTCATGTTAGTTTTTTTTCTAAGTCCACTTTTGTTTAATTCAAAATTCACACGTAACTAGTCGAGCAGACAGAAATTGACAGATTGACTAGACGAAATAAAATTCAGATTTTTTGGAGAACTTGGATGAAAACTTGAATGGGTGTGAACCATTCGTTGGTAGAAGCGAACAAGTACATGTTGAGTGGATTCTTGTAACAATTAAATTTAAAAAATTAAGTTTGGGACGAAATGTTGATTTTAAGAGGTAGTCTAATTGAGATTCGAAAAAAAAATCATATTCCGGAAACCGCGAGTACTAGATTATTAGATTACGGTGCCTTCAATTTAGGTAGCTTGTAAGTAGAAAATTCAACTCGAGAGAAGTTTGAATTCAATTTTTTCTGAATTTTCAAAGTATCACTAACAGGAGGTACTTCCCAGAAAAGGTTATTAAAAGAGGAAGTAAACTGCAGAACCCGGGTAAGAAAAGAGCGAAATGCAATAAGAAATTCTCAAAGAAATAACTTAAA</canonical>
            <polymorphic>TCGAAGTAATATTAAGGAAATACATGATTTTGAGAACATTTTAAAAATACAGAAAAATTAAGCCGGAGTCCCCCTTTAATATGTAAATTTATCATTGTTGGAAACCAAAAGTTACTTTTCCTTATATCCCATGATGGCCCCTTTAATTCTCCTTCAAAAGTTGCCGACTGGGTTATTACGATGAAAAACTTGTGGGATCTTATTAGTTCGATTATTTTGGACTTTAAACAATAGGATGTAGTTTTACAGTCCATTTGTGTTGACCGGAAAAGGTACTTTAGTCGAATCTAGAAAAAAGAAAAACGGAAAGTAATACGAACATATTTTTCATGTAGTCCATCGAAACATGAATTTCTTTTCAGGACGCCCGAGAACTCATTTTGTATGCACCAACAATTTTTATTCTCTCTTTTGGGTTCAATTCGATTTTAAAAATTTAATGGAAAAAGATATAAGCCAGGAGAACAACTCTCTGGAAAAAAAGAATGATTCATGTTAGRTTTTTTTCTAAGTCCACTTTTGTTTAATTCAAAATTCACACGTAACTAGTCGAGCAGACAGAAATTGACAGATTGACTAGACGAAATAAAATTCAGATTTTTTGGAGAACTTGGATGAAAACTTGAATGGGTGTGAACCATTCGTTGGTAGAAGCGAACAAGTACATGTTGAGTGGATTCTTGTAACAATTAAATTTAAAAAATTAAGTTTGGGACGAAATGTTGATTTTAAGAGGTAGTCTAATTGAGATTCGAAAAAAAAATCATATTCCGGAAACCGCGAGTACTAGATTATTAGATTACGGTGCCTTCAATTTAGGTAGCTTGTAAGTAGAAAATTCAACTCGAGAGAAGTTTGAATTCAATTTTTTCTGAATTTTCAAAGTATCACTAACAGGAGGTACTTCCCAGAAAAGGTTATTAAAAGAGGAAGTAAACTGCAGAACCCGGGTAAGAAAAGAGCGAAATGCAATAAGAAATTCTCAAAGAAATAACTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGAACATATTTTTCATGTAGTCC</pcr_primer_p1>
		<pcr_primer_p2>ATTTCTGTCTGCTCGACTAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGAACATATTTTTCATGTAGTCCATCGAAACATGAATTTCTTTTCAGGACGCCCGAGAACTCATTTTGTATGCACCAACAATTTTTATTCTCTCTTTTGGGTTCAATTCGATTTTAAAAATTTAATGGAAAAAGATATAAGCCAGGAGAACAACTCTCTGGAAAAAAAGAATGATTCATGTTAGTTTTTTTTCTAAGTCCACTTTTGTTTAATTCAAAATTCACACGTAACTAGTCGAGCAGACAGAAAT</canonical_amplicon>
		<polymorphic_amplicon>CGAACATATTTTTCATGTAGTCCATCGAAACATGAATTTCTTTTCAGGACGCCCGAGAACTCATTTTGTATGCACCAACAATTTTTATTCTCTCTTTTGGGTTCAATTCGATTTTAAAAATTTAATGGAAAAAGATATAAGCCAGGAGAACAACTCTCTGGAAAAAAAGAATGATTCATGTTAGRTTTTTTTCTAAGTCCACTTTTGTTTAATTCAAAATTCACACGTAACTAGTCGAGCAGACAGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38991</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>80353</contig_pos>
        <strand></strand>
        <context>TTTTTTTCTA[A/G]GTCCACTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGAACAACTCTCTGGAAAAAAAGAATGATTCATGTTAGTTTTTTTTCTA</left_flank>
        <right_flank>GTCCACTTTTGTTTAATTCAAAATTCACACGTAACTAGTCGAGCAGACAG</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTAAGGAAATACATGATTTTGAGAACATTTTAAAAATACAGAAAAATTAAGCCGGAGTCCCCCTTTAATATGTAAATTTATCATTGTTGGAAACCAAAAGTTACTTTTCCTTATATCCCATGATGGCCCCTTTAATTCTCCTTCAAAAGTTGCCGACTGGGTTATTACGATGAAAAACTTGTGGGATCTTATTAGTTCGATTATTTTGGACTTTAAACAATAGGATGTAGTTTTACAGTCCATTTGTGTTGACCGGAAAAGGTACTTTAGTCGAATCTAGAAAAAAGAAAAACGGAAAGTAATACGAACATATTTTTCATGTAGTCCATCGAAACATGAATTTCTTTTCAGGACGCCCGAGAACTCATTTTGTATGCACCAACAATTTTTATTCTCTCTTTTGGGTTCAATTCGATTTTAAAAATTTAATGGAAAAAGATATAAGCCAGGAGAACAACTCTCTGGAAAAAAAGAATGATTCATGTTAGTTTTTTTTCTAAGTCCACTTTTGTTTAATTCAAAATTCACACGTAACTAGTCGAGCAGACAGAAATTGACAGATTGACTAGACGAAATAAAATTCAGATTTTTTGGAGAACTTGGATGAAAACTTGAATGGGTGTGAACCATTCGTTGGTAGAAGCGAACAAGTACATGTTGAGTGGATTCTTGTAACAATTAAATTTAAAAAATTAAGTTTGGGACGAAATGTTGATTTTAAGAGGTAGTCTAATTGAGATTCGAAAAAAAAATCATATTCCGGAAACCGCGAGTACTAGATTATTAGATTACGGTGCCTTCAATTTAGGTAGCTTGTAAGTAGAAAATTCAACTCGAGAGAAGTTTGAATTCAATTTTTTCTGAATTTTCAAAGTATCACTAACAGGAGGTACTTCCCAGAAAAGGTTATTAAAAGAGGAAGTAAACTGCAGAACCCGGGTAAGAAAAGAGCGAAATGCAATAAGAAATTCTCAAAGAAATAACTTAAATGTTAAAATAT</canonical>
            <polymorphic>TTAAGGAAATACATGATTTTGAGAACATTTTAAAAATACAGAAAAATTAAGCCGGAGTCCCCCTTTAATATGTAAATTTATCATTGTTGGAAACCAAAAGTTACTTTTCCTTATATCCCATGATGGCCCCTTTAATTCTCCTTCAAAAGTTGCCGACTGGGTTATTACGATGAAAAACTTGTGGGATCTTATTAGTTCGATTATTTTGGACTTTAAACAATAGGATGTAGTTTTACAGTCCATTTGTGTTGACCGGAAAAGGTACTTTAGTCGAATCTAGAAAAAAGAAAAACGGAAAGTAATACGAACATATTTTTCATGTAGTCCATCGAAACATGAATTTCTTTTCAGGACGCCCGAGAACTCATTTTGTATGCACCAACAATTTTTATTCTCTCTTTTGGGTTCAATTCGATTTTAAAAATTTAATGGAAAAAGATATAAGCCAGGAGAACAACTCTCTGGAAAAAAAGAATGATTCATGTTAGTTTTTTTTCTARGTCCACTTTTGTTTAATTCAAAATTCACACGTAACTAGTCGAGCAGACAGAAATTGACAGATTGACTAGACGAAATAAAATTCAGATTTTTTGGAGAACTTGGATGAAAACTTGAATGGGTGTGAACCATTCGTTGGTAGAAGCGAACAAGTACATGTTGAGTGGATTCTTGTAACAATTAAATTTAAAAAATTAAGTTTGGGACGAAATGTTGATTTTAAGAGGTAGTCTAATTGAGATTCGAAAAAAAAATCATATTCCGGAAACCGCGAGTACTAGATTATTAGATTACGGTGCCTTCAATTTAGGTAGCTTGTAAGTAGAAAATTCAACTCGAGAGAAGTTTGAATTCAATTTTTTCTGAATTTTCAAAGTATCACTAACAGGAGGTACTTCCCAGAAAAGGTTATTAAAAGAGGAAGTAAACTGCAGAACCCGGGTAAGAAAAGAGCGAAATGCAATAAGAAATTCTCAAAGAAATAACTTAAATGTTAAAATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAACATATTTTTCATGTAGTCC</pcr_primer_p1>
		<pcr_primer_p2>ATTTCTGTCTGCTCGACTAGTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CGAACATATTTTTCATGTAGTCCATCGAAACATGAATTTCTTTTCAGGACGCCCGAGAACTCATTTTGTATGCACCAACAATTTTTATTCTCTCTTTTGGGTTCAATTCGATTTTAAAAATTTAATGGAAAAAGATATAAGCCAGGAGAACAACTCTCTGGAAAAAAAGAATGATTCATGTTAGTTTTTTTTCTAAGTCCACTTTTGTTTAATTCAAAATTCACACGTAACTAGTCGAGCAGACAGAAAT</canonical_amplicon>
		<polymorphic_amplicon>CGAACATATTTTTCATGTAGTCCATCGAAACATGAATTTCTTTTCAGGACGCCCGAGAACTCATTTTGTATGCACCAACAATTTTTATTCTCTCTTTTGGGTTCAATTCGATTTTAAAAATTTAATGGAAAAAGATATAAGCCAGGAGAACAACTCTCTGGAAAAAAAGAATGATTCATGTTAGTTTTTTTTCTARGTCCACTTTTGTTTAATTCAAAATTCACACGTAACTAGTCGAGCAGACAGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38992</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>83053</contig_pos>
        <strand></strand>
        <context>GATTTTTTTT[A/T]WAATTTCGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCTTCTGTGTATTTTGAACGGCGTTTTTCAAGGATTTTGGATTTTTTTT</left_flank>
        <right_flank>AAATTTCGTAGTAATTTTTAATTCAATAAAATTTTTGGTCGGATTCCCCC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATTTCTGCTTCTGTATTTGGCATTTTGAAGGATCTCGACAGAGGCTATGGATATTTTTTCGGAAAGGGTTCAAAACATCCATGGGCACCAAGATACATCCCTCAACACTATTTTGGGGGAACAAAGAAAAATTATTTTTTAAAAGTAATTCCATGCTAATAGACTGTCTGAGCAATGGAATATATTCTCGAAAAACAAAAAAAAATCGGATCTGAAAAATGTTTTTGTTGAATTAAAATATTGGAAAAGTTACGTATTTTCCTGATTGGAATCCCCGAGCAGTGCGAAAGCTAGGCCACGGCGACTGGCAGCCTGTCTTTTAAATGGCGGAGATGAAAGCAGAATAATCCAGGAGAATTGCTATACATATATAAGAGAGGCTGCCCGCCGTGGCATAATAGTAAGTTTCTCAGTTCGCGGGAATTCAGGTCCTAGTCCCTATTCGAAACCTTCTGTGTATTTTGAACGGCGTTTTTCAAGGATTTTGGATTTTTTTTAAAATTTCGTAGTAATTTTTAATTCAATAAAATTTTTGGTCGGATTCCCCCTTCAAATAAAACTCTCGGGATGAAATGTAATGTTTTCGGAAGTTTGTCGAAAATTTGATTATTTCATAGATTCGCCACTTGAGACGTCACATGCAGAATCGAAATCGTATATTAAAATATTAAAACTTCTCCCAAATGTTAGAATCTCACACGTTCGAACTCAGAATATATAACTCAGAAAGCACTTTCAGTTAGTATCCTTTTTGTATCCATTCATCTTTTTTTGCGTTCGTCATGCTTTATTTTTTCTTCTTGGGATCAGTTTGCATCTTTTATTTCTAATGATGTTTTCAGAAACGAAAAAAGAAAAAAGTGATGTTTATGTTGTCAGGTTCGTTTCAATCCATCATCCACAACATTCATTTACTTTTCTTTTTTCTACCCATTATAATAATAACAACGAATCTTCGGTTTTTTGAAAACTCGGAAAGATGAAGATGATGACTCTGT</canonical>
            <polymorphic>TCATTTCTGCTTCTGTATTTGGCATTTTGAAGGATCTCGACAGAGGCTATGGATATTTTTTCGGAAAGGGTTCAAAACATCCATGGGCACCAAGATACATCCCTCAACACTATTTTGGGGGAACAAAGAAAAATTATTTTTTAAAAGTAATTCCATGCTAATAGACTGTCTGAGCAATGGAATATATTCTCGAAAAACAAAAAAAAATCGGATCTGAAAAATGTTTTTGTTGAATTAAAATATTGGAAAAGTTACGTATTTTCCTGATTGGAATCCCCGAGCAGTGCGAAAGCTAGGCCACGGCGACTGGCAGCCTGTCTTTTAAATGGCGGAGATGAAAGCAGAATAATCCAGGAGAATTGCTATACATATATAAGAGAGGCTGCCCGCCGTGGCATAATAGTAAGTTTCTCAGTTCGCGGGAATTCAGGTCCTAGTCCCTATTCGAAACCTTCTGTGTATTTTGAACGGCGTTTTTCAAGGATTTTGGATTTTTTTTWAAATTTCGTAGTAATTTTTAATTCAATAAAATTTTTGGTCGGATTCCCCCTTCAAATAAAACTCTCGGGATGAAATGTAATGTTTTCGGAAGTTTGTCGAAAATTTGATTATTTCATAGATTCGCCACTTGAGACGTCACATGCAGAATCGAAATCGTATATTAAAATATTAAAACTTCTCCCAAATGTTAGAATCTCACACGTTCGAACTCAGAATATATAACTCAGAAAGCACTTTCAGTTAGTATCCTTTTTGTATCCATTCATCTTTTTTTGCGTTCGTCATGCTTTATTTTTTCTTCTTGGGATCAGTTTGCATCTTTTATTTCTAATGATGTTTTCAGAAACGAAAAAAGAAAAAAGTGATGTTTATGTTGTCAGGTTCGTTTCAATCCATCATCCACAACATTCATTTACTTTTCTTTTTTCTACCCATTATAATAATAACAACGAATCTTCGGTTTTTTGAAAACTCGGAAAGATGAAGATGATGACTCTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 181 176 142</canonical_bands>
                <polymorphic_bands>677 181 142</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>330 176 144 141 94 87 20 8</canonical_bands>
                <polymorphic_bands>330 196 144 141 94 87 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAACCTTCTGTGTATTTTGAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTCTAACATTTGGGAGAAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAACCTTCTGTGTATTTTGAACGGCGTTTTTCAAGGATTTTGGATTTTTTTTAAAATTTCGTAGTAATTTTTAATTCAATAAAATTTTTGGTCGGATTCCCCCTTCAAATAAAACTCTCGGGATGAAATGTAATGTTTTCGGAAGTTTGTCGAAAATTTGATTATTTCATAGATTCGCCACTTGAGACGTCACATGCAGAATCGAAATCGTATATTAAAATATTAAAACTTCTCCCAAATGTTAGAAT</canonical_amplicon>
		<polymorphic_amplicon>GAAACCTTCTGTGTATTTTGAACGGCGTTTTTCAAGGATTTTGGATTTTTTTTWAAATTTCGTAGTAATTTTTAATTCAATAAAATTTTTGGTCGGATTCCCCCTTCAAATAAAACTCTCGGGATGAAATGTAATGTTTTCGGAAGTTTGTCGAAAATTTGATTATTTCATAGATTCGCCACTTGAGACGTCACATGCAGAATCGAAATCGTATATTAAAATATTAAAACTTCTCCCAAATGTTAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38993</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>83054</contig_pos>
        <strand></strand>
        <context>ATTTTTTTTW[A/T]AATTTCGTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCTTCTGTGTATTTTGAACGGCGTTTTTCAAGGATTTTGGATTTTTTTTA</left_flank>
        <right_flank>AATTTCGTAGTAATTTTTAATTCAATAAAATTTTTGGTCGGATTCCCCCT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTCTGCTTCTGTATTTGGCATTTTGAAGGATCTCGACAGAGGCTATGGATATTTTTTCGGAAAGGGTTCAAAACATCCATGGGCACCAAGATACATCCCTCAACACTATTTTGGGGGAACAAAGAAAAATTATTTTTTAAAAGTAATTCCATGCTAATAGACTGTCTGAGCAATGGAATATATTCTCGAAAAACAAAAAAAAATCGGATCTGAAAAATGTTTTTGTTGAATTAAAATATTGGAAAAGTTACGTATTTTCCTGATTGGAATCCCCGAGCAGTGCGAAAGCTAGGCCACGGCGACTGGCAGCCTGTCTTTTAAATGGCGGAGATGAAAGCAGAATAATCCAGGAGAATTGCTATACATATATAAGAGAGGCTGCCCGCCGTGGCATAATAGTAAGTTTCTCAGTTCGCGGGAATTCAGGTCCTAGTCCCTATTCGAAACCTTCTGTGTATTTTGAACGGCGTTTTTCAAGGATTTTGGATTTTTTTTAAAATTTCGTAGTAATTTTTAATTCAATAAAATTTTTGGTCGGATTCCCCCTTCAAATAAAACTCTCGGGATGAAATGTAATGTTTTCGGAAGTTTGTCGAAAATTTGATTATTTCATAGATTCGCCACTTGAGACGTCACATGCAGAATCGAAATCGTATATTAAAATATTAAAACTTCTCCCAAATGTTAGAATCTCACACGTTCGAACTCAGAATATATAACTCAGAAAGCACTTTCAGTTAGTATCCTTTTTGTATCCATTCATCTTTTTTTGCGTTCGTCATGCTTTATTTTTTCTTCTTGGGATCAGTTTGCATCTTTTATTTCTAATGATGTTTTCAGAAACGAAAAAAGAAAAAAGTGATGTTTATGTTGTCAGGTTCGTTTCAATCCATCATCCACAACATTCATTTACTTTTCTTTTTTCTACCCATTATAATAATAACAACGAATCTTCGGTTTTTTGAAAACTCGGAAAGATGAAGATGATGACTCTGTG</canonical>
            <polymorphic>CATTTCTGCTTCTGTATTTGGCATTTTGAAGGATCTCGACAGAGGCTATGGATATTTTTTCGGAAAGGGTTCAAAACATCCATGGGCACCAAGATACATCCCTCAACACTATTTTGGGGGAACAAAGAAAAATTATTTTTTAAAAGTAATTCCATGCTAATAGACTGTCTGAGCAATGGAATATATTCTCGAAAAACAAAAAAAAATCGGATCTGAAAAATGTTTTTGTTGAATTAAAATATTGGAAAAGTTACGTATTTTCCTGATTGGAATCCCCGAGCAGTGCGAAAGCTAGGCCACGGCGACTGGCAGCCTGTCTTTTAAATGGCGGAGATGAAAGCAGAATAATCCAGGAGAATTGCTATACATATATAAGAGAGGCTGCCCGCCGTGGCATAATAGTAAGTTTCTCAGTTCGCGGGAATTCAGGTCCTAGTCCCTATTCGAAACCTTCTGTGTATTTTGAACGGCGTTTTTCAAGGATTTTGGATTTTTTTTAWAATTTCGTAGTAATTTTTAATTCAATAAAATTTTTGGTCGGATTCCCCCTTCAAATAAAACTCTCGGGATGAAATGTAATGTTTTCGGAAGTTTGTCGAAAATTTGATTATTTCATAGATTCGCCACTTGAGACGTCACATGCAGAATCGAAATCGTATATTAAAATATTAAAACTTCTCCCAAATGTTAGAATCTCACACGTTCGAACTCAGAATATATAACTCAGAAAGCACTTTCAGTTAGTATCCTTTTTGTATCCATTCATCTTTTTTTGCGTTCGTCATGCTTTATTTTTTCTTCTTGGGATCAGTTTGCATCTTTTATTTCTAATGATGTTTTCAGAAACGAAAAAAGAAAAAAGTGATGTTTATGTTGTCAGGTTCGTTTCAATCCATCATCCACAACATTCATTTACTTTTCTTTTTTCTACCCATTATAATAATAACAACGAATCTTCGGTTTTTTGAAAACTCGGAAAGATGAAGATGATGACTCTGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>422 400 78 72 28</canonical_bands>
                <polymorphic_bands>422 400 106 72</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 181 176 141</canonical_bands>
                <polymorphic_bands>678 181 141</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>331 176 144 140 94 87 20 8</canonical_bands>
                <polymorphic_bands>331 196 144 140 94 87 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAACCTTCTGTGTATTTTGAAC</pcr_primer_p1>
		<pcr_primer_p2>ATTCTAACATTTGGGAGAAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAACCTTCTGTGTATTTTGAACGGCGTTTTTCAAGGATTTTGGATTTTTTTTAAAATTTCGTAGTAATTTTTAATTCAATAAAATTTTTGGTCGGATTCCCCCTTCAAATAAAACTCTCGGGATGAAATGTAATGTTTTCGGAAGTTTGTCGAAAATTTGATTATTTCATAGATTCGCCACTTGAGACGTCACATGCAGAATCGAAATCGTATATTAAAATATTAAAACTTCTCCCAAATGTTAGAAT</canonical_amplicon>
		<polymorphic_amplicon>GAAACCTTCTGTGTATTTTGAACGGCGTTTTTCAAGGATTTTGGATTTTTTTTAWAATTTCGTAGTAATTTTTAATTCAATAAAATTTTTGGTCGGATTCCCCCTTCAAATAAAACTCTCGGGATGAAATGTAATGTTTTCGGAAGTTTGTCGAAAATTTGATTATTTCATAGATTCGCCACTTGAGACGTCACATGCAGAATCGAAATCGTATATTAAAATATTAAAACTTCTCCCAAATGTTAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38994</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>116803</contig_pos>
        <strand>+</strand>
        <context>AACACTATTA[A/G]TCACATCAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAGTGGACGGGTGCTGCCGATGTATGACGGATTACGAGCAACACTATTA</left_flank>
        <right_flank>TCACATCAATCATTGGTTGAGTTGACGATCCTGGTGCAGGCTGAAAACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCCATCTGTTTCCAGCCCTTTACTCTCTATAACTTCTGTGATAACTCTGATAAACTTTGGTACTAGCGAGTTTTCATGTTGACAGATTGCAAATAGAGTTGATCCAAATACTGGCTCCGCTGAAAATCATTATTTGACATTATTTCTCCCAAATGTTAATCATACGTTTGTAAATTCCCTTTTCTTTCAGACTTTCCACCGTTGGCCGAGTTCGGAAGAATCTTCTCAACTTCTCGAGAATCGTTTCTTTTGAAGGTCTAGATTCATCCACAGCTGCACTAGTCGACATTGATTCAATTGCAGATTGTGACATCGGATGATCCCGTCGACGCATACTCCGACTTCTGAGAAAACAAATCATTTTAGTTGGAATGACAGAATAAAATATTTCGTTTTGTTTCTAGGTTGTTTTTTATGAAAAATGCTTACATGGGAATCAATGCATGAGAAAGTGGACGGGTGCTGCCGATGTATGACGGATTACGAGCAACACTATTAGTCACATCAATCATTGGTTGAGTTGACGATCCTGGTGCAGGCTGAAAACTTATAAACCATACACAGTGTTCATAAATAATGCAAAATAATTTTTTTCGAACATTTTACCTCGCTGGTCGATCTCTGTAAACTGAGCATTTTAACTCTCGAGCAAGCGGTGTGCCACATGATTGTATTCGGTCAAAAATTGACACAAATAAAAAGTTTTGGAATTCAAGGCAACCTTGGCCTTTTGTTGAATTTCATTTTTTTAAAAAGTTGGAAACAAGTCGATTGAGTAGCTAATCGTCGGTAAGGAATAATCCGCTAATTGTTACTCTCATTTTTAGATCTTGGGGGGGGGGGGAGGTGAAAAGAGAGAAAACACATTTTCTTCTCCCGAATTCCAAAACTTACCAGTTTCGCGACGACCTCTTCCAGAGATTTGTACCATTCACTGACTTCGGTGTCATTGGAACCTCTCAACAGGTACTTTTTTGTGTTGCACAACTCTAATTGAAT</canonical>
            <polymorphic>TCCCATCTGTTTCCAGCCCTTTACTCTCTATAACTTCTGTGATAACTCTGATAAACTTTGGTACTAGCGAGTTTTCATGTTGACAGATTGCAAATAGAGTTGATCCAAATACTGGCTCCGCTGAAAATCATTATTTGACATTATTTCTCCCAAATGTTAATCATACGTTTGTAAATTCCCTTTTCTTTCAGACTTTCCACCGTTGGCCGAGTTCGGAAGAATCTTCTCAACTTCTCGAGAATCGTTTCTTTTGAAGGTCTAGATTCATCCACAGCTGCACTAGTCGACATTGATTCAATTGCAGATTGTGACATCGGATGATCCCGTCGACGCATACTCCGACTTCTGAGAAAACAAATCATTTTAGTTGGAATGACAGAATAAAATATTTCGTTTTGTTTCTAGGTTGTTTTTTATGAAAAATGCTTACATGGGAATCAATGCATGAGAAAGTGGACGGGTGCTGCCGATGTATGACGGATTACGAGCAACACTATTARTCACATCAATCATTGGTTGAGTTGACGATCCTGGTGCAGGCTGAAAACTTATAAACCATACACAGTGTTCATAAATAATGCAAAATAATTTTTTTCGAACATTTTACCTCGCTGGTCGATCTCTGTAAACTGAGCATTTTAACTCTCGAGCAAGCGGTGTGCCACATGATTGTATTCGGTCAAAAATTGACACAAATAAAAAGTTTTGGAATTCAAGGCAACCTTGGCCTTTTGTTGAATTTCATTTTTTTAAAAAGTTGGAAACAAGTCGATTGAGTAGCTAATCGTCGGTAAGGAATAATCCGCTAATTGTTACTCTCATTTTTAGATCTTGGGGGGGGGGGGAGGTGAAAAGAGAGAAAACACATTTTCTTCTCCCGAATTCCAAAACTTACCAGTTTCGCGACGACCTCTTCCAGAGATTTGTACCATTCACTGACTTCGGTGTCATTGGAACCTCTCAACAGGTACTTTTTTGTGTTGCACAACTCTAATTGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>312 307 192 189</canonical_bands>
                <polymorphic_bands>504 307 189</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>501 307 192</canonical_bands>
                <polymorphic_bands>693 307</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATATTTCGTTTTGTTTCTAGG</pcr_primer_p1>
		<pcr_primer_p2>CAGTTTACAGAGATCGACCAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATATTTCGTTTTGTTTCTAGGTTGTTTTTTATGAAAAATGCTTACATGGGAATCAATGCATGAGAAAGTGGACGGGTGCTGCCGATGTATGACGGATTACGAGCAACACTATTAGTCACATCAATCATTGGTTGAGTTGACGATCCTGGTGCAGGCTGAAAACTTATAAACCATACACAGTGTTCATAAATAATGCAAAATAATTTTTTTCGAACATTTTACCTCGCTGGTCGATCTCTGTAAACTG</canonical_amplicon>
		<polymorphic_amplicon>AAAATATTTCGTTTTGTTTCTAGGTTGTTTTTTATGAAAAATGCTTACATGGGAATCAATGCATGAGAAAGTGGACGGGTGCTGCCGATGTATGACGGATTACGAGCAACACTATTARTCACATCAATCATTGGTTGAGTTGACGATCCTGGTGCAGGCTGAAAACTTATAAACCATACACAGTGTTCATAAATAATGCAAAATAATTTTTTTCGAACATTTTACCTCGCTGGTCGATCTCTGTAAACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38995</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>116981</contig_pos>
        <strand>+</strand>
        <context>GATTGTATTC[G/T]GTCAAAAATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACTGAGCATTTTAACTCTCGAGCAAGCGGTGTGCCACATGATTGTATTC</left_flank>
        <right_flank>GTCAAAAATTGACACAAATAAAAAGTTTTGGAATTCAAGGCAACCTTGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTTTCTTTCAGACTTTCCACCGTTGGCCGAGTTCGGAAGAATCTTCTCAACTTCTCGAGAATCGTTTCTTTTGAAGGTCTAGATTCATCCACAGCTGCACTAGTCGACATTGATTCAATTGCAGATTGTGACATCGGATGATCCCGTCGACGCATACTCCGACTTCTGAGAAAACAAATCATTTTAGTTGGAATGACAGAATAAAATATTTCGTTTTGTTTCTAGGTTGTTTTTTATGAAAAATGCTTACATGGGAATCAATGCATGAGAAAGTGGACGGGTGCTGCCGATGTATGACGGATTACGAGCAACACTATTAGTCACATCAATCATTGGTTGAGTTGACGATCCTGGTGCAGGCTGAAAACTTATAAACCATACACAGTGTTCATAAATAATGCAAAATAATTTTTTTCGAACATTTTACCTCGCTGGTCGATCTCTGTAAACTGAGCATTTTAACTCTCGAGCAAGCGGTGTGCCACATGATTGTATTCGGTCAAAAATTGACACAAATAAAAAGTTTTGGAATTCAAGGCAACCTTGGCCTTTTGTTGAATTTCATTTTTTTAAAAAGTTGGAAACAAGTCGATTGAGTAGCTAATCGTCGGTAAGGAATAATCCGCTAATTGTTACTCTCATTTTTAGATCTTGGGGGGGGGGGGAGGTGAAAAGAGAGAAAACACATTTTCTTCTCCCGAATTCCAAAACTTACCAGTTTCGCGACGACCTCTTCCAGAGATTTGTACCATTCACTGACTTCGGTGTCATTGGAACCTCTCAACAGGTACTTTTTTGTGTTGCACAACTCTAATTGAATGTATTTCCGTTGTTTCTTTCGCTGTACATCACGATCATCTTGGTACCAGGAGATGGTAGCGCCGCGTAGATCCCAAACTCCTTGTGGAGCGTCGTAGTGTTTACCGTGTTTCTGAAACCATTCTGATAGTTGTTTATTATATAACATTTTCATGTGTACCTCGGCACTTTTCTGATCT</canonical>
            <polymorphic>CCTTTTCTTTCAGACTTTCCACCGTTGGCCGAGTTCGGAAGAATCTTCTCAACTTCTCGAGAATCGTTTCTTTTGAAGGTCTAGATTCATCCACAGCTGCACTAGTCGACATTGATTCAATTGCAGATTGTGACATCGGATGATCCCGTCGACGCATACTCCGACTTCTGAGAAAACAAATCATTTTAGTTGGAATGACAGAATAAAATATTTCGTTTTGTTTCTAGGTTGTTTTTTATGAAAAATGCTTACATGGGAATCAATGCATGAGAAAGTGGACGGGTGCTGCCGATGTATGACGGATTACGAGCAACACTATTAGTCACATCAATCATTGGTTGAGTTGACGATCCTGGTGCAGGCTGAAAACTTATAAACCATACACAGTGTTCATAAATAATGCAAAATAATTTTTTTCGAACATTTTACCTCGCTGGTCGATCTCTGTAAACTGAGCATTTTAACTCTCGAGCAAGCGGTGTGCCACATGATTGTATTCKGTCAAAAATTGACACAAATAAAAAGTTTTGGAATTCAAGGCAACCTTGGCCTTTTGTTGAATTTCATTTTTTTAAAAAGTTGGAAACAAGTCGATTGAGTAGCTAATCGTCGGTAAGGAATAATCCGCTAATTGTTACTCTCATTTTTAGATCTTGGGGGGGGGGGGAGGTGAAAAGAGAGAAAACACATTTTCTTCTCCCGAATTCCAAAACTTACCAGTTTCGCGACGACCTCTTCCAGAGATTTGTACCATTCACTGACTTCGGTGTCATTGGAACCTCTCAACAGGTACTTTTTTGTGTTGCACAACTCTAATTGAATGTATTTCCGTTGTTTCTTTCGCTGTACATCACGATCATCTTGGTACCAGGAGATGGTAGCGCCGCGTAGATCCCAAACTCCTTGTGGAGCGTCGTAGTGTTTACCGTGTTTCTGAAACCATTCTGATAGTTGTTTATTATATAACATTTTCATGTGTACCTCGGCACTTTTCTGATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGTAAACTGAGCATTTTAACTC</pcr_primer_p1>
		<pcr_primer_p2>AAAATGTGTTTTCTCTCTTTTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTGTAAACTGAGCATTTTAACTCTCGAGCAAGCGGTGTGCCACATGATTGTATTCGGTCAAAAATTGACACAAATAAAAAGTTTTGGAATTCAAGGCAACCTTGGCCTTTTGTTGAATTTCATTTTTTTAAAAAGTTGGAAACAAGTCGATTGAGTAGCTAATCGTCGGTAAGGAATAATCCGCTAATTGTTACTCTCATTTTTAGATCTTGGGGGGGGGGGGAGGTGAAAAGAGAGAAAACACATTTT</canonical_amplicon>
		<polymorphic_amplicon>TCTGTAAACTGAGCATTTTAACTCTCGAGCAAGCGGTGTGCCACATGATTGTATTCKGTCAAAAATTGACACAAATAAAAAGTTTTGGAATTCAAGGCAACCTTGGCCTTTTGTTGAATTTCATTTTTTTAAAAAGTTGGAAACAAGTCGATTGAGTAGCTAATCGTCGGTAAGGAATAATCCGCTAATTGTTACTCTCATTTTTAGATCTTGGGGGGGGGGGGAGGTGAAAAGAGAGAAAACACATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38996</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>119528</contig_pos>
        <strand>+</strand>
        <context>GAAATAAAAT[A/T]TTATTTCATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGATAAGTTTCGTAATTTCAAAAGGGAAAGGGAGTTTGCGAAATAAAAT</left_flank>
        <right_flank>TTATTTCATTTCGATTTAAAAAAACAGTTTTCAGCCATAATCAACTTGTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGACTTCCAGTTGTCTTATATTTATGAACATTAAAACTAACGATTTCTTGAAATTGAATGAGATCCGAAGCTCTTGAACCAGCTGGACCTGCTCCAAACGCAGTTACGTCAGCAGTTGATTGAACTGCAGTCGACATCTCAAAAAACCAAGGATACTATAATGAGCACAACTGGAAAGGCATCGGGTATATTTAACTGAAATTTCATAATTGATTTTGAAAATCATGATTTTTAGATAGGAATAAAAAGCGATAGGAACCGGAAACAGGAAAAATATATAGATTAAATTCAGAAAACATAAAAATTATTTTGGTACAATTTGGTCACTCCATGTACAAGGAGTTTTCCCTATACTTGAGAGAGAAACCTGATAGCTACTCAATGTTGACTCTTTTCACTCTCTCTCTCTCTCTCTCTCTCGAATTACGCTAACTTTCTTTGATGCCTGGAGATAAGTTTCGTAATTTCAAAAGGGAAAGGGAGTTTGCGAAATAAAATTTTATTTCATTTCGATTTAAAAAAACAGTTTTCAGCCATAATCAACTTGTGACACAAATATACTCAATAAAAATTGTTTTGCAAAGACTTGTTTTCAGGTTTCCGGAAGCGTTTCCTGATAAAATTGCAGAGCTATGATTATTTGTTATTTTCCTACTAAAAATTTTTAACAGAGAAGAGGCTTATGTGGGTGACGCATCCGCTCGCATCTTCCTCTCGACCAAGGGAAAAGAACAGAACGAAATAGAAATGAAGGAGTGGAGACGCAGAAAGAGATACGAAAACCGGCAGTGTTCTCCCTCTTTTTGTGGGGTTAGAGACAGTGCCTTGACAAAACATGAGAGAAAGAGTAAGACACACACAAGGTGACGATCGATTTGAATACACAATTCGTATTGTAGACACTATCAAGTCAGAATCAGAGACGGTGTGATATGAGTGTCAAGTTTTTTTAAACCTAATAAAATTTAGAACGGCAACCTAATATGTCTTCCGTTTGCC</canonical>
            <polymorphic>ATGACTTCCAGTTGTCTTATATTTATGAACATTAAAACTAACGATTTCTTGAAATTGAATGAGATCCGAAGCTCTTGAACCAGCTGGACCTGCTCCAAACGCAGTTACGTCAGCAGTTGATTGAACTGCAGTCGACATCTCAAAAAACCAAGGATACTATAATGAGCACAACTGGAAAGGCATCGGGTATATTTAACTGAAATTTCATAATTGATTTTGAAAATCATGATTTTTAGATAGGAATAAAAAGCGATAGGAACCGGAAACAGGAAAAATATATAGATTAAATTCAGAAAACATAAAAATTATTTTGGTACAATTTGGTCACTCCATGTACAAGGAGTTTTCCCTATACTTGAGAGAGAAACCTGATAGCTACTCAATGTTGACTCTTTTCACTCTCTCTCTCTCTCTCTCTCTCGAATTACGCTAACTTTCTTTGATGCCTGGAGATAAGTTTCGTAATTTCAAAAGGGAAAGGGAGTTTGCGAAATAAAATWTTATTTCATTTCGATTTAAAAAAACAGTTTTCAGCCATAATCAACTTGTGACACAAATATACTCAATAAAAATTGTTTTGCAAAGACTTGTTTTCAGGTTTCCGGAAGCGTTTCCTGATAAAATTGCAGAGCTATGATTATTTGTTATTTTCCTACTAAAAATTTTTAACAGAGAAGAGGCTTATGTGGGTGACGCATCCGCTCGCATCTTCCTCTCGACCAAGGGAAAAGAACAGAACGAAATAGAAATGAAGGAGTGGAGACGCAGAAAGAGATACGAAAACCGGCAGTGTTCTCCCTCTTTTTGTGGGGTTAGAGACAGTGCCTTGACAAAACATGAGAGAAAGAGTAAGACACACACAAGGTGACGATCGATTTGAATACACAATTCGTATTGTAGACACTATCAAGTCAGAATCAGAGACGGTGTGATATGAGTGTCAAGTTTTTTTAAACCTAATAAAATTTAGAACGGCAACCTAATATGTCTTCCGTTTGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>303 210 200 164 86 37</canonical_bands>
                <polymorphic_bands>374 303 200 86 37</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>226 148 105 78 77 74 52 51 41 39 37 33 17 14 8</canonical_bands>
                <polymorphic_bands>226 148 107 105 78 77 52 51 41 39 37 17 14 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTGAGAGAGAAACCTGATAGC</pcr_primer_p1>
		<pcr_primer_p2>GAAACCTGAAAACAAGTCTTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTTGAGAGAGAAACCTGATAGCTACTCAATGTTGACTCTTTTCACTCTCTCTCTCTCTCTCTCTCTCGAATTACGCTAACTTTCTTTGATGCCTGGAGATAAGTTTCGTAATTTCAAAAGGGAAAGGGAGTTTGCGAAATAAAATTTTATTTCATTTCGATTTAAAAAAACAGTTTTCAGCCATAATCAACTTGTGACACAAATATACTCAATAAAAATTGTTTTGCAAAGACTTGTTTTCAGGTTTC</canonical_amplicon>
		<polymorphic_amplicon>ACTTGAGAGAGAAACCTGATAGCTACTCAATGTTGACTCTTTTCACTCTCTCTCTCTCTCTCTCTCTCGAATTACGCTAACTTTCTTTGATGCCTGGAGATAAGTTTCGTAATTTCAAAAGGGAAAGGGAGTTTGCGAAATAAAATWTTATTTCATTTCGATTTAAAAAAACAGTTTTCAGCCATAATCAACTTGTGACACAAATATACTCAATAAAAATTGTTTTGCAAAGACTTGTTTTCAGGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38997</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>119544</contig_pos>
        <strand>+</strand>
        <context>TCATTTCGAT[A/T]TAAAAAAACA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCAAAAGGGAAAGGGAGTTTGCGAAATAAAATTTTATTTCATTTCGAT</left_flank>
        <right_flank>TAAAAAAACAGTTTTCAGCCATAATCAACTTGTGACACAAATATACTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATATTTATGAACATTAAAACTAACGATTTCTTGAAATTGAATGAGATCCGAAGCTCTTGAACCAGCTGGACCTGCTCCAAACGCAGTTACGTCAGCAGTTGATTGAACTGCAGTCGACATCTCAAAAAACCAAGGATACTATAATGAGCACAACTGGAAAGGCATCGGGTATATTTAACTGAAATTTCATAATTGATTTTGAAAATCATGATTTTTAGATAGGAATAAAAAGCGATAGGAACCGGAAACAGGAAAAATATATAGATTAAATTCAGAAAACATAAAAATTATTTTGGTACAATTTGGTCACTCCATGTACAAGGAGTTTTCCCTATACTTGAGAGAGAAACCTGATAGCTACTCAATGTTGACTCTTTTCACTCTCTCTCTCTCTCTCTCTCTCGAATTACGCTAACTTTCTTTGATGCCTGGAGATAAGTTTCGTAATTTCAAAAGGGAAAGGGAGTTTGCGAAATAAAATTTTATTTCATTTCGATTTAAAAAAACAGTTTTCAGCCATAATCAACTTGTGACACAAATATACTCAATAAAAATTGTTTTGCAAAGACTTGTTTTCAGGTTTCCGGAAGCGTTTCCTGATAAAATTGCAGAGCTATGATTATTTGTTATTTTCCTACTAAAAATTTTTAACAGAGAAGAGGCTTATGTGGGTGACGCATCCGCTCGCATCTTCCTCTCGACCAAGGGAAAAGAACAGAACGAAATAGAAATGAAGGAGTGGAGACGCAGAAAGAGATACGAAAACCGGCAGTGTTCTCCCTCTTTTTGTGGGGTTAGAGACAGTGCCTTGACAAAACATGAGAGAAAGAGTAAGACACACACAAGGTGACGATCGATTTGAATACACAATTCGTATTGTAGACACTATCAAGTCAGAATCAGAGACGGTGTGATATGAGTGTCAAGTTTTTTTAAACCTAATAAAATTTAGAACGGCAACCTAATATGTCTTCCGTTTGCCATATCAGAAAATTCTT</canonical>
            <polymorphic>TTATATTTATGAACATTAAAACTAACGATTTCTTGAAATTGAATGAGATCCGAAGCTCTTGAACCAGCTGGACCTGCTCCAAACGCAGTTACGTCAGCAGTTGATTGAACTGCAGTCGACATCTCAAAAAACCAAGGATACTATAATGAGCACAACTGGAAAGGCATCGGGTATATTTAACTGAAATTTCATAATTGATTTTGAAAATCATGATTTTTAGATAGGAATAAAAAGCGATAGGAACCGGAAACAGGAAAAATATATAGATTAAATTCAGAAAACATAAAAATTATTTTGGTACAATTTGGTCACTCCATGTACAAGGAGTTTTCCCTATACTTGAGAGAGAAACCTGATAGCTACTCAATGTTGACTCTTTTCACTCTCTCTCTCTCTCTCTCTCTCGAATTACGCTAACTTTCTTTGATGCCTGGAGATAAGTTTCGTAATTTCAAAAGGGAAAGGGAGTTTGCGAAATAAAATTTTATTTCATTTCGATWTAAAAAAACAGTTTTCAGCCATAATCAACTTGTGACACAAATATACTCAATAAAAATTGTTTTGCAAAGACTTGTTTTCAGGTTTCCGGAAGCGTTTCCTGATAAAATTGCAGAGCTATGATTATTTGTTATTTTCCTACTAAAAATTTTTAACAGAGAAGAGGCTTATGTGGGTGACGCATCCGCTCGCATCTTCCTCTCGACCAAGGGAAAAGAACAGAACGAAATAGAAATGAAGGAGTGGAGACGCAGAAAGAGATACGAAAACCGGCAGTGTTCTCCCTCTTTTTGTGGGGTTAGAGACAGTGCCTTGACAAAACATGAGAGAAAGAGTAAGACACACACAAGGTGACGATCGATTTGAATACACAATTCGTATTGTAGACACTATCAAGTCAGAATCAGAGACGGTGTGATATGAGTGTCAAGTTTTTTTAAACCTAATAAAATTTAGAACGGCAACCTAATATGTCTTCCGTTTGCCATATCAGAAAATTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 435 64</canonical_bands>
                <polymorphic_bands>936 64</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>285 232 161 150 91 65 16</canonical_bands>
                <polymorphic_bands>382 285 161 91 65 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTGAGAGAGAAACCTGATAGC</pcr_primer_p1>
		<pcr_primer_p2>GAAACCTGAAAACAAGTCTTTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ACTTGAGAGAGAAACCTGATAGCTACTCAATGTTGACTCTTTTCACTCTCTCTCTCTCTCTCTCTCTCGAATTACGCTAACTTTCTTTGATGCCTGGAGATAAGTTTCGTAATTTCAAAAGGGAAAGGGAGTTTGCGAAATAAAATTTTATTTCATTTCGATTTAAAAAAACAGTTTTCAGCCATAATCAACTTGTGACACAAATATACTCAATAAAAATTGTTTTGCAAAGACTTGTTTTCAGGTTTC</canonical_amplicon>
		<polymorphic_amplicon>ACTTGAGAGAGAAACCTGATAGCTACTCAATGTTGACTCTTTTCACTCTCTCTCTCTCTCTCTCTCTCGAATTACGCTAACTTTCTTTGATGCCTGGAGATAAGTTTCGTAATTTCAAAAGGGAAAGGGAGTTTGCGAAATAAAATTTTATTTCATTTCGATWTAAAAAAACAGTTTTCAGCCATAATCAACTTGTGACACAAATATACTCAATAAAAATTGTTTTGCAAAGACTTGTTTTCAGGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38998</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>119606</contig_pos>
        <strand>+</strand>
        <context>AAAAATTGTT[G/T]TGCAAAGACT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTTCAGCCATAATCAACTTGTGACACAAATATACTCAATAAAAATTGTT</left_flank>
        <right_flank>TGCAAAGACTTGTTTTCAGGTTTCCGGAAGCGTTTCCTGATAAAATTGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAGCTGGACCTGCTCCAAACGCAGTTACGTCAGCAGTTGATTGAACTGCAGTCGACATCTCAAAAAACCAAGGATACTATAATGAGCACAACTGGAAAGGCATCGGGTATATTTAACTGAAATTTCATAATTGATTTTGAAAATCATGATTTTTAGATAGGAATAAAAAGCGATAGGAACCGGAAACAGGAAAAATATATAGATTAAATTCAGAAAACATAAAAATTATTTTGGTACAATTTGGTCACTCCATGTACAAGGAGTTTTCCCTATACTTGAGAGAGAAACCTGATAGCTACTCAATGTTGACTCTTTTCACTCTCTCTCTCTCTCTCTCTCTCGAATTACGCTAACTTTCTTTGATGCCTGGAGATAAGTTTCGTAATTTCAAAAGGGAAAGGGAGTTTGCGAAATAAAATTTTATTTCATTTCGATTTAAAAAAACAGTTTTCAGCCATAATCAACTTGTGACACAAATATACTCAATAAAAATTGTTTTGCAAAGACTTGTTTTCAGGTTTCCGGAAGCGTTTCCTGATAAAATTGCAGAGCTATGATTATTTGTTATTTTCCTACTAAAAATTTTTAACAGAGAAGAGGCTTATGTGGGTGACGCATCCGCTCGCATCTTCCTCTCGACCAAGGGAAAAGAACAGAACGAAATAGAAATGAAGGAGTGGAGACGCAGAAAGAGATACGAAAACCGGCAGTGTTCTCCCTCTTTTTGTGGGGTTAGAGACAGTGCCTTGACAAAACATGAGAGAAAGAGTAAGACACACACAAGGTGACGATCGATTTGAATACACAATTCGTATTGTAGACACTATCAAGTCAGAATCAGAGACGGTGTGATATGAGTGTCAAGTTTTTTTAAACCTAATAAAATTTAGAACGGCAACCTAATATGTCTTCCGTTTGCCATATCAGAAAATTCTTAAAATCGCAGACGCTCGTTTTTATTCCTTCATATATATTTTAAAATGTGTCATTGTGAAAAG</canonical>
            <polymorphic>ACCAGCTGGACCTGCTCCAAACGCAGTTACGTCAGCAGTTGATTGAACTGCAGTCGACATCTCAAAAAACCAAGGATACTATAATGAGCACAACTGGAAAGGCATCGGGTATATTTAACTGAAATTTCATAATTGATTTTGAAAATCATGATTTTTAGATAGGAATAAAAAGCGATAGGAACCGGAAACAGGAAAAATATATAGATTAAATTCAGAAAACATAAAAATTATTTTGGTACAATTTGGTCACTCCATGTACAAGGAGTTTTCCCTATACTTGAGAGAGAAACCTGATAGCTACTCAATGTTGACTCTTTTCACTCTCTCTCTCTCTCTCTCTCTCGAATTACGCTAACTTTCTTTGATGCCTGGAGATAAGTTTCGTAATTTCAAAAGGGAAAGGGAGTTTGCGAAATAAAATTTTATTTCATTTCGATTTAAAAAAACAGTTTTCAGCCATAATCAACTTGTGACACAAATATACTCAATAAAAATTGTTKTGCAAAGACTTGTTTTCAGGTTTCCGGAAGCGTTTCCTGATAAAATTGCAGAGCTATGATTATTTGTTATTTTCCTACTAAAAATTTTTAACAGAGAAGAGGCTTATGTGGGTGACGCATCCGCTCGCATCTTCCTCTCGACCAAGGGAAAAGAACAGAACGAAATAGAAATGAAGGAGTGGAGACGCAGAAAGAGATACGAAAACCGGCAGTGTTCTCCCTCTTTTTGTGGGGTTAGAGACAGTGCCTTGACAAAACATGAGAGAAAGAGTAAGACACACACAAGGTGACGATCGATTTGAATACACAATTCGTATTGTAGACACTATCAAGTCAGAATCAGAGACGGTGTGATATGAGTGTCAAGTTTTTTTAAACCTAATAAAATTTAGAACGGCAACCTAATATGTCTTCCGTTTGCCATATCAGAAAATTCTTAAAATCGCAGACGCTCGTTTTTATTCCTTCATATATATTTTAAAATGTGTCATTGTGAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGTTTTCAGCCATAATCAAC</pcr_primer_p1>
		<pcr_primer_p2>GTCTCCACTCCTTCATTTCTATT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ACAGTTTTCAGCCATAATCAACTTGTGACACAAATATACTCAATAAAAATTGTTTTGCAAAGACTTGTTTTCAGGTTTCCGGAAGCGTTTCCTGATAAAATTGCAGAGCTATGATTATTTGTTATTTTCCTACTAAAAATTTTTAACAGAGAAGAGGCTTATGTGGGTGACGCATCCGCTCGCATCTTCCTCTCGACCAAGGGAAAAGAACAGAACGAAATAGAAATGAAGGAGTGGAGAC</canonical_amplicon>
		<polymorphic_amplicon>ACAGTTTTCAGCCATAATCAACTTGTGACACAAATATACTCAATAAAAATTGTTKTGCAAAGACTTGTTTTCAGGTTTCCGGAAGCGTTTCCTGATAAAATTGCAGAGCTATGATTATTTGTTATTTTCCTACTAAAAATTTTTAACAGAGAAGAGGCTTATGTGGGTGACGCATCCGCTCGCATCTTCCTCTCGACCAAGGGAAAAGAACAGAACGAAATAGAAATGAAGGAGTGGAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb38999</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>119650</contig_pos>
        <strand>+</strand>
        <context>TTCCTGATAA[A/T]ATTGCAGAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTGTTTTGCAAAGACTTGTTTTCAGGTTTCCGGAAGCGTTTCCTGATAA</left_flank>
        <right_flank>ATTGCAGAGCTATGATTATTTGTTATTTTCCTACTAAAAATTTTTAACAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACTGCAGTCGACATCTCAAAAAACCAAGGATACTATAATGAGCACAACTGGAAAGGCATCGGGTATATTTAACTGAAATTTCATAATTGATTTTGAAAATCATGATTTTTAGATAGGAATAAAAAGCGATAGGAACCGGAAACAGGAAAAATATATAGATTAAATTCAGAAAACATAAAAATTATTTTGGTACAATTTGGTCACTCCATGTACAAGGAGTTTTCCCTATACTTGAGAGAGAAACCTGATAGCTACTCAATGTTGACTCTTTTCACTCTCTCTCTCTCTCTCTCTCTCGAATTACGCTAACTTTCTTTGATGCCTGGAGATAAGTTTCGTAATTTCAAAAGGGAAAGGGAGTTTGCGAAATAAAATTTTATTTCATTTCGATTTAAAAAAACAGTTTTCAGCCATAATCAACTTGTGACACAAATATACTCAATAAAAATTGTTTTGCAAAGACTTGTTTTCAGGTTTCCGGAAGCGTTTCCTGATAAAATTGCAGAGCTATGATTATTTGTTATTTTCCTACTAAAAATTTTTAACAGAGAAGAGGCTTATGTGGGTGACGCATCCGCTCGCATCTTCCTCTCGACCAAGGGAAAAGAACAGAACGAAATAGAAATGAAGGAGTGGAGACGCAGAAAGAGATACGAAAACCGGCAGTGTTCTCCCTCTTTTTGTGGGGTTAGAGACAGTGCCTTGACAAAACATGAGAGAAAGAGTAAGACACACACAAGGTGACGATCGATTTGAATACACAATTCGTATTGTAGACACTATCAAGTCAGAATCAGAGACGGTGTGATATGAGTGTCAAGTTTTTTTAAACCTAATAAAATTTAGAACGGCAACCTAATATGTCTTCCGTTTGCCATATCAGAAAATTCTTAAAATCGCAGACGCTCGTTTTTATTCCTTCATATATATTTTAAAATGTGTCATTGTGAAAAGCTTGAATATTGTGAATTCAACTATCAAATAGTAGCAGTTATAAA</canonical>
            <polymorphic>GAACTGCAGTCGACATCTCAAAAAACCAAGGATACTATAATGAGCACAACTGGAAAGGCATCGGGTATATTTAACTGAAATTTCATAATTGATTTTGAAAATCATGATTTTTAGATAGGAATAAAAAGCGATAGGAACCGGAAACAGGAAAAATATATAGATTAAATTCAGAAAACATAAAAATTATTTTGGTACAATTTGGTCACTCCATGTACAAGGAGTTTTCCCTATACTTGAGAGAGAAACCTGATAGCTACTCAATGTTGACTCTTTTCACTCTCTCTCTCTCTCTCTCTCTCGAATTACGCTAACTTTCTTTGATGCCTGGAGATAAGTTTCGTAATTTCAAAAGGGAAAGGGAGTTTGCGAAATAAAATTTTATTTCATTTCGATTTAAAAAAACAGTTTTCAGCCATAATCAACTTGTGACACAAATATACTCAATAAAAATTGTTTTGCAAAGACTTGTTTTCAGGTTTCCGGAAGCGTTTCCTGATAAWATTGCAGAGCTATGATTATTTGTTATTTTCCTACTAAAAATTTTTAACAGAGAAGAGGCTTATGTGGGTGACGCATCCGCTCGCATCTTCCTCTCGACCAAGGGAAAAGAACAGAACGAAATAGAAATGAAGGAGTGGAGACGCAGAAAGAGATACGAAAACCGGCAGTGTTCTCCCTCTTTTTGTGGGGTTAGAGACAGTGCCTTGACAAAACATGAGAGAAAGAGTAAGACACACACAAGGTGACGATCGATTTGAATACACAATTCGTATTGTAGACACTATCAAGTCAGAATCAGAGACGGTGTGATATGAGTGTCAAGTTTTTTTAAACCTAATAAAATTTAGAACGGCAACCTAATATGTCTTCCGTTTGCCATATCAGAAAATTCTTAAAATCGCAGACGCTCGTTTTTATTCCTTCATATATATTTTAAAATGTGTCATTGTGAAAAGCTTGAATATTGTGAATTCAACTATCAAATAGTAGCAGTTATAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>226 105 82 78 78 77 74 51 46 41 39 33 31 17 14 8</canonical_bands>
                <polymorphic_bands>226 105 90 82 78 78 77 74 46 41 33 31 17 14 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAGTTTTCAGCCATAATCAAC</pcr_primer_p1>
		<pcr_primer_p2>GTCTCCACTCCTTCATTTCTATT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ACAGTTTTCAGCCATAATCAACTTGTGACACAAATATACTCAATAAAAATTGTTTTGCAAAGACTTGTTTTCAGGTTTCCGGAAGCGTTTCCTGATAAAATTGCAGAGCTATGATTATTTGTTATTTTCCTACTAAAAATTTTTAACAGAGAAGAGGCTTATGTGGGTGACGCATCCGCTCGCATCTTCCTCTCGACCAAGGGAAAAGAACAGAACGAAATAGAAATGAAGGAGTGGAGAC</canonical_amplicon>
		<polymorphic_amplicon>ACAGTTTTCAGCCATAATCAACTTGTGACACAAATATACTCAATAAAAATTGTTTTGCAAAGACTTGTTTTCAGGTTTCCGGAAGCGTTTCCTGATAAWATTGCAGAGCTATGATTATTTGTTATTTTCCTACTAAAAATTTTTAACAGAGAAGAGGCTTATGTGGGTGACGCATCCGCTCGCATCTTCCTCTCGACCAAGGGAAAAGAACAGAACGAAATAGAAATGAAGGAGTGGAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39000</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>119699</contig_pos>
        <strand>+</strand>
        <context>AATTTTTAAC[A/T]GAGAAGAGGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATTGCAGAGCTATGATTATTTGTTATTTTCCTACTAAAAATTTTTAAC</left_flank>
        <right_flank>GAGAAGAGGCTTATGTGGGTGACGCATCCGCTCGCATCTTCCTCTCGACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGAAAGGCATCGGGTATATTTAACTGAAATTTCATAATTGATTTTGAAAATCATGATTTTTAGATAGGAATAAAAAGCGATAGGAACCGGAAACAGGAAAAATATATAGATTAAATTCAGAAAACATAAAAATTATTTTGGTACAATTTGGTCACTCCATGTACAAGGAGTTTTCCCTATACTTGAGAGAGAAACCTGATAGCTACTCAATGTTGACTCTTTTCACTCTCTCTCTCTCTCTCTCTCTCGAATTACGCTAACTTTCTTTGATGCCTGGAGATAAGTTTCGTAATTTCAAAAGGGAAAGGGAGTTTGCGAAATAAAATTTTATTTCATTTCGATTTAAAAAAACAGTTTTCAGCCATAATCAACTTGTGACACAAATATACTCAATAAAAATTGTTTTGCAAAGACTTGTTTTCAGGTTTCCGGAAGCGTTTCCTGATAAAATTGCAGAGCTATGATTATTTGTTATTTTCCTACTAAAAATTTTTAACAGAGAAGAGGCTTATGTGGGTGACGCATCCGCTCGCATCTTCCTCTCGACCAAGGGAAAAGAACAGAACGAAATAGAAATGAAGGAGTGGAGACGCAGAAAGAGATACGAAAACCGGCAGTGTTCTCCCTCTTTTTGTGGGGTTAGAGACAGTGCCTTGACAAAACATGAGAGAAAGAGTAAGACACACACAAGGTGACGATCGATTTGAATACACAATTCGTATTGTAGACACTATCAAGTCAGAATCAGAGACGGTGTGATATGAGTGTCAAGTTTTTTTAAACCTAATAAAATTTAGAACGGCAACCTAATATGTCTTCCGTTTGCCATATCAGAAAATTCTTAAAATCGCAGACGCTCGTTTTTATTCCTTCATATATATTTTAAAATGTGTCATTGTGAAAAGCTTGAATATTGTGAATTCAACTATCAAATAGTAGCAGTTATAAATCCATCAATTTAATTGTTCCCCCTACAACAACAAATTTCGAATACAAAC</canonical>
            <polymorphic>CTGGAAAGGCATCGGGTATATTTAACTGAAATTTCATAATTGATTTTGAAAATCATGATTTTTAGATAGGAATAAAAAGCGATAGGAACCGGAAACAGGAAAAATATATAGATTAAATTCAGAAAACATAAAAATTATTTTGGTACAATTTGGTCACTCCATGTACAAGGAGTTTTCCCTATACTTGAGAGAGAAACCTGATAGCTACTCAATGTTGACTCTTTTCACTCTCTCTCTCTCTCTCTCTCTCGAATTACGCTAACTTTCTTTGATGCCTGGAGATAAGTTTCGTAATTTCAAAAGGGAAAGGGAGTTTGCGAAATAAAATTTTATTTCATTTCGATTTAAAAAAACAGTTTTCAGCCATAATCAACTTGTGACACAAATATACTCAATAAAAATTGTTTTGCAAAGACTTGTTTTCAGGTTTCCGGAAGCGTTTCCTGATAAAATTGCAGAGCTATGATTATTTGTTATTTTCCTACTAAAAATTTTTAACWGAGAAGAGGCTTATGTGGGTGACGCATCCGCTCGCATCTTCCTCTCGACCAAGGGAAAAGAACAGAACGAAATAGAAATGAAGGAGTGGAGACGCAGAAAGAGATACGAAAACCGGCAGTGTTCTCCCTCTTTTTGTGGGGTTAGAGACAGTGCCTTGACAAAACATGAGAGAAAGAGTAAGACACACACAAGGTGACGATCGATTTGAATACACAATTCGTATTGTAGACACTATCAAGTCAGAATCAGAGACGGTGTGATATGAGTGTCAAGTTTTTTTAAACCTAATAAAATTTAGAACGGCAACCTAATATGTCTTCCGTTTGCCATATCAGAAAATTCTTAAAATCGCAGACGCTCGTTTTTATTCCTTCATATATATTTTAAAATGTGTCATTGTGAAAAGCTTGAATATTGTGAATTCAACTATCAAATAGTAGCAGTTATAAATCCATCAATTTAATTGTTCCCCCTACAACAACAAATTTCGAATACAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGTTTTCAGCCATAATCAAC</pcr_primer_p1>
		<pcr_primer_p2>GTCTCCACTCCTTCATTTCTATT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ACAGTTTTCAGCCATAATCAACTTGTGACACAAATATACTCAATAAAAATTGTTTTGCAAAGACTTGTTTTCAGGTTTCCGGAAGCGTTTCCTGATAAAATTGCAGAGCTATGATTATTTGTTATTTTCCTACTAAAAATTTTTAACAGAGAAGAGGCTTATGTGGGTGACGCATCCGCTCGCATCTTCCTCTCGACCAAGGGAAAAGAACAGAACGAAATAGAAATGAAGGAGTGGAGAC</canonical_amplicon>
		<polymorphic_amplicon>ACAGTTTTCAGCCATAATCAACTTGTGACACAAATATACTCAATAAAAATTGTTTTGCAAAGACTTGTTTTCAGGTTTCCGGAAGCGTTTCCTGATAAAATTGCAGAGCTATGATTATTTGTTATTTTCCTACTAAAAATTTTTAACWGAGAAGAGGCTTATGTGGGTGACGCATCCGCTCGCATCTTCCTCTCGACCAAGGGAAAAGAACAGAACGAAATAGAAATGAAGGAGTGGAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39001</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>120007</contig_pos>
        <strand>+</strand>
        <context>AGAACGGCAA[C/T]CTAATATGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGATATGAGTGTCAAGTTTTTTTAAACCTAATAAAATTTAGAACGGCAA</left_flank>
        <right_flank>CTAATATGTCTTCCGTTTGCCATATCAGAAAATTCTTAAAATCGCAGACG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGAGTTTGCGAAATAAAATTTTATTTCATTTCGATTTAAAAAAACAGTTTTCAGCCATAATCAACTTGTGACACAAATATACTCAATAAAAATTGTTTTGCAAAGACTTGTTTTCAGGTTTCCGGAAGCGTTTCCTGATAAAATTGCAGAGCTATGATTATTTGTTATTTTCCTACTAAAAATTTTTAACAGAGAAGAGGCTTATGTGGGTGACGCATCCGCTCGCATCTTCCTCTCGACCAAGGGAAAAGAACAGAACGAAATAGAAATGAAGGAGTGGAGACGCAGAAAGAGATACGAAAACCGGCAGTGTTCTCCCTCTTTTTGTGGGGTTAGAGACAGTGCCTTGACAAAACATGAGAGAAAGAGTAAGACACACACAAGGTGACGATCGATTTGAATACACAATTCGTATTGTAGACACTATCAAGTCAGAATCAGAGACGGTGTGATATGAGTGTCAAGTTTTTTTAAACCTAATAAAATTTAGAACGGCAACCTAATATGTCTTCCGTTTGCCATATCAGAAAATTCTTAAAATCGCAGACGCTCGTTTTTATTCCTTCATATATATTTTAAAATGTGTCATTGTGAAAAGCTTGAATATTGTGAATTCAACTATCAAATAGTAGCAGTTATAAATCCATCAATTTAATTGTTCCCCCTACAACAACAAATTTCGAATACAAACAAGGATGCGATGGCAATAAAGAAGAAGAGGCTACATTGAAGAGAAAGACCAAGTGAGAGCCTCTTCCAACTCTTGTGGCTTCTATAAGGACTGCACCAAAAATAACCAATGTGTCGAGACAATAATCATTGTGGAAAGCTTCGGAAAACAAAACACTTAATTGCTAATAATTTAATTAGACATTAAATCATATAGTCGACAGCATACATATAAAAAAGGGGGAGCATGGGTTAAAATGTTTTAGAACTAGAAAACACGGAACAAAATGTGCAGTGCATACATTTTCAAAAAAGGGATGATTTGTTAAA</canonical>
            <polymorphic>GGGAGTTTGCGAAATAAAATTTTATTTCATTTCGATTTAAAAAAACAGTTTTCAGCCATAATCAACTTGTGACACAAATATACTCAATAAAAATTGTTTTGCAAAGACTTGTTTTCAGGTTTCCGGAAGCGTTTCCTGATAAAATTGCAGAGCTATGATTATTTGTTATTTTCCTACTAAAAATTTTTAACAGAGAAGAGGCTTATGTGGGTGACGCATCCGCTCGCATCTTCCTCTCGACCAAGGGAAAAGAACAGAACGAAATAGAAATGAAGGAGTGGAGACGCAGAAAGAGATACGAAAACCGGCAGTGTTCTCCCTCTTTTTGTGGGGTTAGAGACAGTGCCTTGACAAAACATGAGAGAAAGAGTAAGACACACACAAGGTGACGATCGATTTGAATACACAATTCGTATTGTAGACACTATCAAGTCAGAATCAGAGACGGTGTGATATGAGTGTCAAGTTTTTTTAAACCTAATAAAATTTAGAACGGCAAYCTAATATGTCTTCCGTTTGCCATATCAGAAAATTCTTAAAATCGCAGACGCTCGTTTTTATTCCTTCATATATATTTTAAAATGTGTCATTGTGAAAAGCTTGAATATTGTGAATTCAACTATCAAATAGTAGCAGTTATAAATCCATCAATTTAATTGTTCCCCCTACAACAACAAATTTCGAATACAAACAAGGATGCGATGGCAATAAAGAAGAAGAGGCTACATTGAAGAGAAAGACCAAGTGAGAGCCTCTTCCAACTCTTGTGGCTTCTATAAGGACTGCACCAAAAATAACCAATGTGTCGAGACAATAATCATTGTGGAAAGCTTCGGAAAACAAAACACTTAATTGCTAATAATTTAATTAGACATTAAATCATATAGTCGACAGCATACATATAAAAAAGGGGGAGCATGGGTTAAAATGTTTTAGAACTAGAAAACACGGAACAAAATGTGCAGTGCATACATTTTCAAAAAAGGGATGATTTGTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGTGATATGAGTGTCAAGTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTGTTTGTATTCGAAATTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTGTGATATGAGTGTCAAGTTTTTTTAAACCTAATAAAATTTAGAACGGCAACCTAATATGTCTTCCGTTTGCCATATCAGAAAATTCTTAAAATCGCAGACGCTCGTTTTTATTCCTTCATATATATTTTAAAATGTGTCATTGTGAAAAGCTTGAATATTGTGAATTCAACTATCAAATAGTAGCAGTTATAAATCCATCAATTTAATTGTTCCCCCTACAACAACAAATTTCGAATACAAACAAG</canonical_amplicon>
		<polymorphic_amplicon>GGTGTGATATGAGTGTCAAGTTTTTTTAAACCTAATAAAATTTAGAACGGCAAYCTAATATGTCTTCCGTTTGCCATATCAGAAAATTCTTAAAATCGCAGACGCTCGTTTTTATTCCTTCATATATATTTTAAAATGTGTCATTGTGAAAAGCTTGAATATTGTGAATTCAACTATCAAATAGTAGCAGTTATAAATCCATCAATTTAATTGTTCCCCCTACAACAACAAATTTCGAATACAAACAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39002</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>155725</contig_pos>
        <strand>+</strand>
        <context>AGGTTATACA[G/T]TRCGAATCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GACGAATTGTTGACATGAAATATGATATCAGATATCAGTTAGGTTATACA</left_flank>
        <right_flank>TACGAATCCATCATTATATATTGACGATATTTTGGACGCGAATCGGGAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTCAACCTCCCTGCGTTTCTCACGTTTTGTGTGTACAGAAAAGAAACGTCCATGAGGATTGCGGTTTTCGATCCAAATATGATGCCACGCCCCCTATTTTTTGAAAATTTTCGAAAATTCTGCAACTCATTGAATGTTTTCACAAAAGAAATTATAGGCCGATTCTTCTGGAAACAAGAATAATTGTGCATTTAGCTGCTCTACAGTAGTCTCTTTACATCTTCAGAATCTGAGTGTCTCAACTGGTTTCCTTTGAAATTCCTTCCGGAAAACGATTATTTACTTTATCACCTGCTGTGCTCTCATTAATTCAATTGACATCCTCTTTTTCGGAATTGCAACATTTTGATGAATTCAACCTGTTGCTATTCCTTTTCTTGTTCCAGAATCATTCATTATTCGTTTTTCCCAGGATTGGAAACCTATCGGGATAGGAACGAATTCCCCGACGAATTGTTGACATGAAATATGATATCAGATATCAGTTAGGTTATACATTACGAATCCATCATTATATATTGACGATATTTTGGACGCGAATCGGGAGGAGACAAACGGATGGCGGAGAATGAAAAGAACAAGAGAACTACTACTAGAAATGATTGTTCATTTGGGAAACGAGAGGGGGTAAAAGCAGAGACGATTTGGATAGTGAATCAGCTTTGAAACTATACTTTCGGTCAAGTTAAGATTGTTCAGAGGCTAAAAATTTCTAGCAAAAACTAGAAGAAAACTGATCATGAGTTGATTTTGATCTGTGAGACGTTTCGTTTGTGAACATCTGTGGATTTTATATCTACAGTACCGGTGTTTTGTATACCTTATTGACCGGTACTGTACATTTGAGAATTCTGGAGCACGGCTGTCAAGTTTCCGATCACTTTGGTAACTTTGCATTCACACAATTTTCTTTAATTCCTAGTTTTTCAGTTATTTGCTGATTTCTGGAAGGCACTCCTTTTTGGCTCGTTTTTGTACTGAAAACGTGAAAAACAGGT</canonical>
            <polymorphic>TCCTCAACCTCCCTGCGTTTCTCACGTTTTGTGTGTACAGAAAAGAAACGTCCATGAGGATTGCGGTTTTCGATCCAAATATGATGCCACGCCCCCTATTTTTTGAAAATTTTCGAAAATTCTGCAACTCATTGAATGTTTTCACAAAAGAAATTATAGGCCGATTCTTCTGGAAACAAGAATAATTGTGCATTTAGCTGCTCTACAGTAGTCTCTTTACATCTTCAGAATCTGAGTGTCTCAACTGGTTTCCTTTGAAATTCCTTCCGGAAAACGATTATTTACTTTATCACCTGCTGTGCTCTCATTAATTCAATTGACATCCTCTTTTTCGGAATTGCAACATTTTGATGAATTCAACCTGTTGCTATTCCTTTTCTTGTTCCAGAATCATTCATTATTCGTTTTTCCCAGGATTGGAAACCTATCGGGATAGGAACGAATTCCCCGACGAATTGTTGACATGAAATATGATATCAGATATCAGTTAGGTTATACAKTACGAATCCATCATTATATATTGACGATATTTTGGACGCGAATCGGGAGGAGACAAACGGATGGCGGAGAATGAAAAGAACAAGAGAACTACTACTAGAAATGATTGTTCATTTGGGAAACGAGAGGGGGTAAAAGCAGAGACGATTTGGATAGTGAATCAGCTTTGAAACTATACTTTCGGTCAAGTTAAGATTGTTCAGAGGCTAAAAATTTCTAGCAAAAACTAGAAGAAAACTGATCATGAGTTGATTTTGATCTGTGAGACGTTTCGTTTGTGAACATCTGTGGATTTTATATCTACAGTACCGGTGTTTTGTATACCTTATTGACCGGTACTGTACATTTGAGAATTCTGGAGCACGGCTGTCAAGTTTCCGATCACTTTGGTAACTTTGCATTCACACAATTTTCTTTAATTCCTAGTTTTTCAGTTATTTGCTGATTTCTGGAAGGCACTCCTTTTTGGCTCGTTTTTGTACTGAAAACGTGAAAAACAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGCTATTCCTTTTCTTGTTC</pcr_primer_p1>
		<pcr_primer_p2>CCAAATGAACAATCATTTCTAGT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GTTGCTATTCCTTTTCTTGTTCCAGAATCATTCATTATTCGTTTTTCCCAGGATTGGAAACCTATCGGGATAGGAACGAATTCCCCGACGAATTGTTGACATGAAATATGATATCAGATATCAGTTAGGTTATACATTACGAATCCATCATTATATATTGACGATATTTTGGACGCGAATCGGGAGGAGACAAACGGATGGCGGAGAATGAAAAGAACAAGAGAACTACTACTAGAAATGATTGTTCATTTGG</canonical_amplicon>
		<polymorphic_amplicon>GTTGCTATTCCTTTTCTTGTTCCAGAATCATTCATTATTCGTTTTTCCCAGGATTGGAAACCTATCGGGATAGGAACGAATTCCCCGACGAATTGTTGACATGAAATATGATATCAGATATCAGTTAGGTTATACAKTACGAATCCATCATTATATATTGACGATATTTTGGACGCGAATCGGGAGGAGACAAACGGATGGCGGAGAATGAAAAGAACAAGAGAACTACTACTAGAAATGATTGTTCATTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39003</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>155727</contig_pos>
        <strand>+</strand>
        <context>GTTATACAKT[A/G]CGAATCCATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAATTGTTGACATGAAATATGATATCAGATATCAGTTAGGTTATACATT</left_flank>
        <right_flank>CGAATCCATCATTATATATTGACGATATTTTGGACGCGAATCGGGAGGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAACCTCCCTGCGTTTCTCACGTTTTGTGTGTACAGAAAAGAAACGTCCATGAGGATTGCGGTTTTCGATCCAAATATGATGCCACGCCCCCTATTTTTTGAAAATTTTCGAAAATTCTGCAACTCATTGAATGTTTTCACAAAAGAAATTATAGGCCGATTCTTCTGGAAACAAGAATAATTGTGCATTTAGCTGCTCTACAGTAGTCTCTTTACATCTTCAGAATCTGAGTGTCTCAACTGGTTTCCTTTGAAATTCCTTCCGGAAAACGATTATTTACTTTATCACCTGCTGTGCTCTCATTAATTCAATTGACATCCTCTTTTTCGGAATTGCAACATTTTGATGAATTCAACCTGTTGCTATTCCTTTTCTTGTTCCAGAATCATTCATTATTCGTTTTTCCCAGGATTGGAAACCTATCGGGATAGGAACGAATTCCCCGACGAATTGTTGACATGAAATATGATATCAGATATCAGTTAGGTTATACATTACGAATCCATCATTATATATTGACGATATTTTGGACGCGAATCGGGAGGAGACAAACGGATGGCGGAGAATGAAAAGAACAAGAGAACTACTACTAGAAATGATTGTTCATTTGGGAAACGAGAGGGGGTAAAAGCAGAGACGATTTGGATAGTGAATCAGCTTTGAAACTATACTTTCGGTCAAGTTAAGATTGTTCAGAGGCTAAAAATTTCTAGCAAAAACTAGAAGAAAACTGATCATGAGTTGATTTTGATCTGTGAGACGTTTCGTTTGTGAACATCTGTGGATTTTATATCTACAGTACCGGTGTTTTGTATACCTTATTGACCGGTACTGTACATTTGAGAATTCTGGAGCACGGCTGTCAAGTTTCCGATCACTTTGGTAACTTTGCATTCACACAATTTTCTTTAATTCCTAGTTTTTCAGTTATTTGCTGATTTCTGGAAGGCACTCCTTTTTGGCTCGTTTTTGTACTGAAAACGTGAAAAACAGGTGT</canonical>
            <polymorphic>CTCAACCTCCCTGCGTTTCTCACGTTTTGTGTGTACAGAAAAGAAACGTCCATGAGGATTGCGGTTTTCGATCCAAATATGATGCCACGCCCCCTATTTTTTGAAAATTTTCGAAAATTCTGCAACTCATTGAATGTTTTCACAAAAGAAATTATAGGCCGATTCTTCTGGAAACAAGAATAATTGTGCATTTAGCTGCTCTACAGTAGTCTCTTTACATCTTCAGAATCTGAGTGTCTCAACTGGTTTCCTTTGAAATTCCTTCCGGAAAACGATTATTTACTTTATCACCTGCTGTGCTCTCATTAATTCAATTGACATCCTCTTTTTCGGAATTGCAACATTTTGATGAATTCAACCTGTTGCTATTCCTTTTCTTGTTCCAGAATCATTCATTATTCGTTTTTCCCAGGATTGGAAACCTATCGGGATAGGAACGAATTCCCCGACGAATTGTTGACATGAAATATGATATCAGATATCAGTTAGGTTATACATTRCGAATCCATCATTATATATTGACGATATTTTGGACGCGAATCGGGAGGAGACAAACGGATGGCGGAGAATGAAAAGAACAAGAGAACTACTACTAGAAATGATTGTTCATTTGGGAAACGAGAGGGGGTAAAAGCAGAGACGATTTGGATAGTGAATCAGCTTTGAAACTATACTTTCGGTCAAGTTAAGATTGTTCAGAGGCTAAAAATTTCTAGCAAAAACTAGAAGAAAACTGATCATGAGTTGATTTTGATCTGTGAGACGTTTCGTTTGTGAACATCTGTGGATTTTATATCTACAGTACCGGTGTTTTGTATACCTTATTGACCGGTACTGTACATTTGAGAATTCTGGAGCACGGCTGTCAAGTTTCCGATCACTTTGGTAACTTTGCATTCACACAATTTTCTTTAATTCCTAGTTTTTCAGTTATTTGCTGATTTCTGGAAGGCACTCCTTTTTGGCTCGTTTTTGTACTGAAAACGTGAAAAACAGGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACGAATTGTTGACATGAAATA</pcr_primer_p1>
		<pcr_primer_p2>CAATCTTAACTTGACCGAAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GACGAATTGTTGACATGAAATATGATATCAGATATCAGTTAGGTTATACATTACGAATCCATCATTATATATTGACGATATTTTGGACGCGAATCGGGAGGAGACAAACGGATGGCGGAGAATGAAAAGAACAAGAGAACTACTACTAGAAATGATTGTTCATTTGGGAAACGAGAGGGGGTAAAAGCAGAGACGATTTGGATAGTGAATCAGCTTTGAAACTATACTTTCGGTCAAGTTAAGATTG</canonical_amplicon>
		<polymorphic_amplicon>GACGAATTGTTGACATGAAATATGATATCAGATATCAGTTAGGTTATACATTRCGAATCCATCATTATATATTGACGATATTTTGGACGCGAATCGGGAGGAGACAAACGGATGGCGGAGAATGAAAAGAACAAGAGAACTACTACTAGAAATGATTGTTCATTTGGGAAACGAGAGGGGGTAAAAGCAGAGACGATTTGGATAGTGAATCAGCTTTGAAACTATACTTTCGGTCAAGTTAAGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39004</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>250038</contig_pos>
        <strand>+</strand>
        <context>GGATGAATTC[C/G]TTCCACCTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAATCGTATTTCATCTGTTTTTTGTTAATCATTCCCCTCGGATGAATTC</left_flank>
        <right_flank>TTCCACCTCCCAAAGGCTGATATTTTCTCTCTTGTTATTGTCGTTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGACATGGCATTTTCAGAATGTCTGGCTTTTCTGCCGTCCTCTGGAAAATTAAGAGTTCAAAAAATGAATCAAGGACTACTGTAACTAAAACACAACTTAAGAGAAATTTGAACTACGATTCATTAATAGAATAATGTTCAGACAATGACGTTGAAGTGCAGCTGACACTTATTTTGGACCTTTTATGATTTTTCACTTCCTTCCGGAACACAAACTTGTCTAGAATAACTCTTAACCTATTCGAAAAATGGTTCATGGAACCAAAAGTGTAAAGATTTTTAGATTTGGTTATTGAAAACACTTGTAGCGGTAAATAAACGATTCTTGTGTTCTGAGCATGAGAAAGAAATATCAAATTTATAAGTGTTGTTATATATGGAAACCTATTCTAGAACATGCATTTTTTCAAAAAGTAAGATCCAAAAAGGCTATAAAATAACAAGAAAAAAAATCGTATTTCATCTGTTTTTTGTTAATCATTCCCCTCGGATGAATTCGTTCCACCTCCCAAAGGCTGATATTTTCTCTCTTGTTATTGTCGTTTTTTTTGTCTGAAAATTAGAGCACTGCGACCGGTGAGATATGCATCAGTTGGAATAATTTCATGGTGATTCCTGCGGAAAATATATTTTATTTCGCAGAGGGAGTCTTCCAAATTGACGGGCCGAGTGGAACTGTGATCTTTGAGCTCGAGTGTCTGAAATTGGAAGAACTGTGGTTTTAAAAATCAATTGAAAGAATTTGTGGGGGCATTTCATAAAATGAACTCATCAGTTACGTCGGCAACATATCATTCTGGGCCAGTGATCCTGATTTCAGATTATTTCATTGAGCTATTTCAGTCAGACTTCCGCTGGTCTACGATCAGTACGGCTAGTTTTCGAAAAATTTTCAGCTGACTTTTCATTTCAAAGAAAAATCCATTCGAGTGGAAAAGGAAATAGCAGAGTACTTTCGACGCGAGGATTGATGTTGAACATAAAAAAAGAAACTAGGAA</canonical>
            <polymorphic>GCGACATGGCATTTTCAGAATGTCTGGCTTTTCTGCCGTCCTCTGGAAAATTAAGAGTTCAAAAAATGAATCAAGGACTACTGTAACTAAAACACAACTTAAGAGAAATTTGAACTACGATTCATTAATAGAATAATGTTCAGACAATGACGTTGAAGTGCAGCTGACACTTATTTTGGACCTTTTATGATTTTTCACTTCCTTCCGGAACACAAACTTGTCTAGAATAACTCTTAACCTATTCGAAAAATGGTTCATGGAACCAAAAGTGTAAAGATTTTTAGATTTGGTTATTGAAAACACTTGTAGCGGTAAATAAACGATTCTTGTGTTCTGAGCATGAGAAAGAAATATCAAATTTATAAGTGTTGTTATATATGGAAACCTATTCTAGAACATGCATTTTTTCAAAAAGTAAGATCCAAAAAGGCTATAAAATAACAAGAAAAAAAATCGTATTTCATCTGTTTTTTGTTAATCATTCCCCTCGGATGAATTCSTTCCACCTCCCAAAGGCTGATATTTTCTCTCTTGTTATTGTCGTTTTTTTTGTCTGAAAATTAGAGCACTGCGACCGGTGAGATATGCATCAGTTGGAATAATTTCATGGTGATTCCTGCGGAAAATATATTTTATTTCGCAGAGGGAGTCTTCCAAATTGACGGGCCGAGTGGAACTGTGATCTTTGAGCTCGAGTGTCTGAAATTGGAAGAACTGTGGTTTTAAAAATCAATTGAAAGAATTTGTGGGGGCATTTCATAAAATGAACTCATCAGTTACGTCGGCAACATATCATTCTGGGCCAGTGATCCTGATTTCAGATTATTTCATTGAGCTATTTCAGTCAGACTTCCGCTGGTCTACGATCAGTACGGCTAGTTTTCGAAAAATTTTCAGCTGACTTTTCATTTCAAAGAAAAATCCATTCGAGTGGAAAAGGAAATAGCAGAGTACTTTCGACGCGAGGATTGATGTTGAACATAAAAAAAGAAACTAGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCTGAGCATGAGAAAGAAATA</pcr_primer_p1>
		<pcr_primer_p2>AGTGCTCTAATTTTCAGACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GTTCTGAGCATGAGAAAGAAATATCAAATTTATAAGTGTTGTTATATATGGAAACCTATTCTAGAACATGCATTTTTTCAAAAAGTAAGATCCAAAAAGGCTATAAAATAACAAGAAAAAAAATCGTATTTCATCTGTTTTTTGTTAATCATTCCCCTCGGATGAATTCGTTCCACCTCCCAAAGGCTGATATTTTCTCTCTTGTTATTGTCGTTTTTTTTGTCTGAAAATTAGAGCACT</canonical_amplicon>
		<polymorphic_amplicon>GTTCTGAGCATGAGAAAGAAATATCAAATTTATAAGTGTTGTTATATATGGAAACCTATTCTAGAACATGCATTTTTTCAAAAAGTAAGATCCAAAAAGGCTATAAAATAACAAGAAAAAAAATCGTATTTCATCTGTTTTTTGTTAATCATTCCCCTCGGATGAATTCSTTCCACCTCCCAAAGGCTGATATTTTCTCTCTTGTTATTGTCGTTTTTTTTGTCTGAAAATTAGAGCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39005</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>294943</contig_pos>
        <strand>+</strand>
        <context>TATGTCACAT[C/G]TGTCCCTCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGTTCTTCTTTGTCTCGTCATTTGATGGTATCTTCTTCCCTATGTCACAT</left_flank>
        <right_flank>TGTCCCTCAAAACGTACTAGTTTTCACTTTCCATTCTCCTCAATTTTCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTGGAGAAAACTATTGGGAACAAACTATAGGGAACAAACTAAAACTATAGGGAACTATAGGGAACATACTGCTCGAAGTATCCACTTTGAAAATTTGGATAGAACTACTTCCAGCTGGAATTTCCATTTCACTTCGAGCTGCGATTCCAGCCGAGTTTTCAAAAAATATATTTTGACCTAAAATTTTAGCAATATGTTCCCTATAGTTTTTTCTTCACTTTTCCCCCAAATTTTCAGACAGATTGGTTCAGTCTCCATTCAGGAGTCGATCTTCAAATTTTCCATATACAGTAATCGTTGCATCAATTTCTCCATGTATCCTTATACCATACTGAACAAAATCGCATGATAGAAATTAGTTCCAGATACTGAGTGACCACAGTTCTCTAAACTATTTGTTGTCTATTTTCAGCAAAATGCTAATATATCACATGTGTCCTTCAAAACAGTTCTTCTTTGTCTCGTCATTTGATGGTATCTTCTTCCCTATGTCACATGTGTCCCTCAAAACGTACTAGTTTTCACTTTCCATTCTCCTCAATTTTCCATTTTTGTCCTTGAGAACGAACGTTTTTTTAGTAATTGCCTTGGGAAATAAATTACCAGAATCTCTTTCATTTTTAGTCGACGACTGACTTCTCCCAATGTTTTTATTCTTTTTTAGTTCGTCTTTAAAAGATTTTGGAGACTGGAGGAGTCTCTTTTCGGCAGAAAAAAACGTCACGGTTTTAGAGTTTAGTGGAGTGAAAGACATCTTCCGGTGTCTAGAATCGAAACTCGCATTCGCAAAGTTTTCAAATCCAAAATTCCTTTTTTTGGCACAACAATTTACATTTAAATCCGTTTCTTGTTTTCAGAAACTACATATGATACATGTAAGAAAAAGAAGAAAAAGAAGAAGAGAAATTCGATTATTATCTTTGAATCGGAGAGTTTTTTGAAGTGCGGTGTCACTTTTTTTGCATGCTCCAACGAGAATTTCTTCTAAACTTCTGAAT</canonical>
            <polymorphic>AACTGGAGAAAACTATTGGGAACAAACTATAGGGAACAAACTAAAACTATAGGGAACTATAGGGAACATACTGCTCGAAGTATCCACTTTGAAAATTTGGATAGAACTACTTCCAGCTGGAATTTCCATTTCACTTCGAGCTGCGATTCCAGCCGAGTTTTCAAAAAATATATTTTGACCTAAAATTTTAGCAATATGTTCCCTATAGTTTTTTCTTCACTTTTCCCCCAAATTTTCAGACAGATTGGTTCAGTCTCCATTCAGGAGTCGATCTTCAAATTTTCCATATACAGTAATCGTTGCATCAATTTCTCCATGTATCCTTATACCATACTGAACAAAATCGCATGATAGAAATTAGTTCCAGATACTGAGTGACCACAGTTCTCTAAACTATTTGTTGTCTATTTTCAGCAAAATGCTAATATATCACATGTGTCCTTCAAAACAGTTCTTCTTTGTCTCGTCATTTGATGGTATCTTCTTCCCTATGTCACATSTGTCCCTCAAAACGTACTAGTTTTCACTTTCCATTCTCCTCAATTTTCCATTTTTGTCCTTGAGAACGAACGTTTTTTTAGTAATTGCCTTGGGAAATAAATTACCAGAATCTCTTTCATTTTTAGTCGACGACTGACTTCTCCCAATGTTTTTATTCTTTTTTAGTTCGTCTTTAAAAGATTTTGGAGACTGGAGGAGTCTCTTTTCGGCAGAAAAAAACGTCACGGTTTTAGAGTTTAGTGGAGTGAAAGACATCTTCCGGTGTCTAGAATCGAAACTCGCATTCGCAAAGTTTTCAAATCCAAAATTCCTTTTTTTGGCACAACAATTTACATTTAAATCCGTTTCTTGTTTTCAGAAACTACATATGATACATGTAAGAAAAAGAAGAAAAAGAAGAAGAGAAATTCGATTATTATCTTTGAATCGGAGAGTTTTTTGAAGTGCGGTGTCACTTTTTTTGCATGCTCCAACGAGAATTTCTTCTAAACTTCTGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>432 378 126 64</canonical_bands>
                <polymorphic_bands>442 432 126</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>432 378 126 64</canonical_bands>
                <polymorphic_bands>442 432 126</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>436 378 90 64 32</canonical_bands>
                <polymorphic_bands>442 436 90 32</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>378 315 90 86 64 35 32</canonical_bands>
                <polymorphic_bands>442 315 90 86 35 32</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>199 158 124 86 86 58 58 51 47 45 24 18 17 6 6 5 5 4 3</canonical_bands>
                <polymorphic_bands>199 158 124 86 86 58 58 51 47 45 30 18 17 6 5 5 4 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTATTTTCAGCAAAATGCTAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAACATTGGGAGAAGTCAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTATTTTCAGCAAAATGCTAATATATCACATGTGTCCTTCAAAACAGTTCTTCTTTGTCTCGTCATTTGATGGTATCTTCTTCCCTATGTCACATGTGTCCCTCAAAACGTACTAGTTTTCACTTTCCATTCTCCTCAATTTTCCATTTTTGTCCTTGAGAACGAACGTTTTTTTAGTAATTGCCTTGGGAAATAAATTACCAGAATCTCTTTCATTTTTAGTCGACGACTGACTTCTCCCAATGTTTT</canonical_amplicon>
		<polymorphic_amplicon>TCTATTTTCAGCAAAATGCTAATATATCACATGTGTCCTTCAAAACAGTTCTTCTTTGTCTCGTCATTTGATGGTATCTTCTTCCCTATGTCACATSTGTCCCTCAAAACGTACTAGTTTTCACTTTCCATTCTCCTCAATTTTCCATTTTTGTCCTTGAGAACGAACGTTTTTTTAGTAATTGCCTTGGGAAATAAATTACCAGAATCTCTTTCATTTTTAGTCGACGACTGACTTCTCCCAATGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39006</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>310934</contig_pos>
        <strand>+</strand>
        <context>TATTGCATTG[A/T]TTTTTTTTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCGTACAGATTTTGCTAACAGCTAATATTTTTTCTAATGTATTGCATTG</left_flank>
        <right_flank>TTTTTTTTTCAAATTTATATTCCTTTCCTAATGGTCGCTCGATCTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTAACAGTCACTCGCGATGGAGAGTTTGCAGTGACGGGAGCAGTGAACGGACGGATTACAATTTGGAGAATGTTCCCACTAAACAAGTTGTATACATATCAAGTAAGGAATGAGTTTTGCCGAAATCATATAAATCATTGATTTTCAGCCACTCAATAGTGCCGTTAGATCTGTAGCAGTAGTAGCCTCTCATCGATTCATTTTGGGTGGTTTAGACTCTGGAGCAATCGTCGTTTTTAATGCGGATTTCAATCGCTGGCATTACGAATACAAACATCGTTACATCCAGAACAGTTCGGCAACGAAGCCGGCTCAAGCGTCACCTCAAAAATGAATTCAAGATTTCAGTGTATAAATTATTTAATGTTCCGGGGACGGTTTTCATAGTTTCAATAAGTCAATTGTGATATCATTTATACTGTGGTTGTGATTGTTATCGTCTTCTGGTCCGTACAGATTTTGCTAACAGCTAATATTTTTTCTAATGTATTGCATTGTTTTTTTTTTCAAATTTATATTCCTTTCCTAATGGTCGCTCGATCTTTTTTCTCACTCCTGCTCCGAAAATCATCAAATTTCGTGTAATAAATTGATTTTAATAATTTAAAATGTTTTTTTTTTAATTTATGTGAAAGAATTGAATAGTTAACTGAAAAATGCACAACAATGCGTTCGAATATCGCATCACTCCTACTTACTCAAAGGAACATATTCGGTAGCAACAGAGTGGTCTCGACACGCGTACAGTACTCCGTCTTTCAATTTTGCGCGGCTTGCTTGCGAGTTTTTCCTGTTTCCTGAGCGATTCCTTTGACGGGAATGCGGTTTTGCTCGGTTCGACAACGATATTTTGAGCATTAACTTTTTTTGAAACATAAAAGTGAAGTTCTGGTCAAAATAGTTTATTTTTCAGATGTTGAGCCGTTTGTCTTCCCCACAACTATGTTCTCGCATTGTAGTGGTCACTCGGGGAGTCGCTAGTGCAGGACGTTAGTTTT</canonical>
            <polymorphic>GTGTAACAGTCACTCGCGATGGAGAGTTTGCAGTGACGGGAGCAGTGAACGGACGGATTACAATTTGGAGAATGTTCCCACTAAACAAGTTGTATACATATCAAGTAAGGAATGAGTTTTGCCGAAATCATATAAATCATTGATTTTCAGCCACTCAATAGTGCCGTTAGATCTGTAGCAGTAGTAGCCTCTCATCGATTCATTTTGGGTGGTTTAGACTCTGGAGCAATCGTCGTTTTTAATGCGGATTTCAATCGCTGGCATTACGAATACAAACATCGTTACATCCAGAACAGTTCGGCAACGAAGCCGGCTCAAGCGTCACCTCAAAAATGAATTCAAGATTTCAGTGTATAAATTATTTAATGTTCCGGGGACGGTTTTCATAGTTTCAATAAGTCAATTGTGATATCATTTATACTGTGGTTGTGATTGTTATCGTCTTCTGGTCCGTACAGATTTTGCTAACAGCTAATATTTTTTCTAATGTATTGCATTGWTTTTTTTTTCAAATTTATATTCCTTTCCTAATGGTCGCTCGATCTTTTTTCTCACTCCTGCTCCGAAAATCATCAAATTTCGTGTAATAAATTGATTTTAATAATTTAAAATGTTTTTTTTTTAATTTATGTGAAAGAATTGAATAGTTAACTGAAAAATGCACAACAATGCGTTCGAATATCGCATCACTCCTACTTACTCAAAGGAACATATTCGGTAGCAACAGAGTGGTCTCGACACGCGTACAGTACTCCGTCTTTCAATTTTGCGCGGCTTGCTTGCGAGTTTTTCCTGTTTCCTGAGCGATTCCTTTGACGGGAATGCGGTTTTGCTCGGTTCGACAACGATATTTTGAGCATTAACTTTTTTTGAAACATAAAAGTGAAGTTCTGGTCAAAATAGTTTATTTTTCAGATGTTGAGCCGTTTGTCTTCCCCACAACTATGTTCTCGCATTGTAGTGGTCACTCGGGGAGTCGCTAGTGCAGGACGTTAGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTATACTGTGGTTGTGATTG</pcr_primer_p1>
		<pcr_primer_p2>TGTGCATTTTTCAGTTAACTATTC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CATTTATACTGTGGTTGTGATTGTTATCGTCTTCTGGTCCGTACAGATTTTGCTAACAGCTAATATTTTTTCTAATGTATTGCATTGTTTTTTTTTTCAAATTTATATTCCTTTCCTAATGGTCGCTCGATCTTTTTTCTCACTCCTGCTCCGAAAATCATCAAATTTCGTGTAATAAATTGATTTTAATAATTTAAAATGTTTTTTTTTTAATTTATGTGAAAGAATTGAATAGTTAACTGAAAAATGCACA</canonical_amplicon>
		<polymorphic_amplicon>CATTTATACTGTGGTTGTGATTGTTATCGTCTTCTGGTCCGTACAGATTTTGCTAACAGCTAATATTTTTTCTAATGTATTGCATTGWTTTTTTTTTCAAATTTATATTCCTTTCCTAATGGTCGCTCGATCTTTTTTCTCACTCCTGCTCCGAAAATCATCAAATTTCGTGTAATAAATTGATTTTAATAATTTAAAATGTTTTTTTTTTAATTTATGTGAAAGAATTGAATAGTTAACTGAAAAATGCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39007</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>311061</contig_pos>
        <strand>+</strand>
        <context>tttttttaat[A/C]tatGTGAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTCGTGTAATAAATTGATTTTAATAATTTAAAATGTTTTTTTTTTAAT</left_flank>
        <right_flank>TATGTGAAAGAATTGAATAGTTAACTGAAAAATGCACAACAATGCGTTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATATAAATCATTGATTTTCAGCCACTCAATAGTGCCGTTAGATCTGTAGCAGTAGTAGCCTCTCATCGATTCATTTTGGGTGGTTTAGACTCTGGAGCAATCGTCGTTTTTAATGCGGATTTCAATCGCTGGCATTACGAATACAAACATCGTTACATCCAGAACAGTTCGGCAACGAAGCCGGCTCAAGCGTCACCTCAAAAATGAATTCAAGATTTCAGTGTATAAATTATTTAATGTTCCGGGGACGGTTTTCATAGTTTCAATAAGTCAATTGTGATATCATTTATACTGTGGTTGTGATTGTTATCGTCTTCTGGTCCGTACAGATTTTGCTAACAGCTAATATTTTTTCTAATGTATTGCATTGTTTTTTTTTTCAAATTTATATTCCTTTCCTAATGGTCGCTCGATCTTTTTTCTCACTCCTGCTCCGAAAATCATCAAATTTCGTGTAATAAATTGATTTTAATAATTTAAAATGTTTTTTTTTTAATTTATGTGAAAGAATTGAATAGTTAACTGAAAAATGCACAACAATGCGTTCGAATATCGCATCACTCCTACTTACTCAAAGGAACATATTCGGTAGCAACAGAGTGGTCTCGACACGCGTACAGTACTCCGTCTTTCAATTTTGCGCGGCTTGCTTGCGAGTTTTTCCTGTTTCCTGAGCGATTCCTTTGACGGGAATGCGGTTTTGCTCGGTTCGACAACGATATTTTGAGCATTAACTTTTTTTGAAACATAAAAGTGAAGTTCTGGTCAAAATAGTTTATTTTTCAGATGTTGAGCCGTTTGTCTTCCCCACAACTATGTTCTCGCATTGTAGTGGTCACTCGGGGAGTCGCTAGTGCAGGACGTTAGTTTTACTTATCAAATCTTTAATTTTGATAGCATTGCAGAAGTCACGGCTCATTCGTCGGATAACAGCATTGGCTTTTTCGAGAAGATTTCCTACCGGTTCAAAGGTTTGTTATCATAGATTATCATTACGA</canonical>
            <polymorphic>TCATATAAATCATTGATTTTCAGCCACTCAATAGTGCCGTTAGATCTGTAGCAGTAGTAGCCTCTCATCGATTCATTTTGGGTGGTTTAGACTCTGGAGCAATCGTCGTTTTTAATGCGGATTTCAATCGCTGGCATTACGAATACAAACATCGTTACATCCAGAACAGTTCGGCAACGAAGCCGGCTCAAGCGTCACCTCAAAAATGAATTCAAGATTTCAGTGTATAAATTATTTAATGTTCCGGGGACGGTTTTCATAGTTTCAATAAGTCAATTGTGATATCATTTATACTGTGGTTGTGATTGTTATCGTCTTCTGGTCCGTACAGATTTTGCTAACAGCTAATATTTTTTCTAATGTATTGCATTGTTTTTTTTTTCAAATTTATATTCCTTTCCTAATGGTCGCTCGATCTTTTTTCTCACTCCTGCTCCGAAAATCATCAAATTTCGTGTAATAAATTGATTTTAATAATTTAAAATGTTTTTTTTTTAATMTATGTGAAAGAATTGAATAGTTAACTGAAAAATGCACAACAATGCGTTCGAATATCGCATCACTCCTACTTACTCAAAGGAACATATTCGGTAGCAACAGAGTGGTCTCGACACGCGTACAGTACTCCGTCTTTCAATTTTGCGCGGCTTGCTTGCGAGTTTTTCCTGTTTCCTGAGCGATTCCTTTGACGGGAATGCGGTTTTGCTCGGTTCGACAACGATATTTTGAGCATTAACTTTTTTTGAAACATAAAAGTGAAGTTCTGGTCAAAATAGTTTATTTTTCAGATGTTGAGCCGTTTGTCTTCCCCACAACTATGTTCTCGCATTGTAGTGGTCACTCGGGGAGTCGCTAGTGCAGGACGTTAGTTTTACTTATCAAATCTTTAATTTTGATAGCATTGCAGAAGTCACGGCTCATTCGTCGGATAACAGCATTGGCTTTTTCGAGAAGATTTCCTACCGGTTCAAAGGTTTGTTATCATAGATTATCATTACGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>253 208 125 112 110 64 45 21 21 14 14 13</canonical_bands>
                <polymorphic_bands>253 208 125 112 110 64 45 35 21 14 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGTACAGATTTTGCTAACAG</pcr_primer_p1>
		<pcr_primer_p2>TAAGTAGGAGTGATGCGATATTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCGTACAGATTTTGCTAACAGCTAATATTTTTTCTAATGTATTGCATTGTTTTTTTTTTCAAATTTATATTCCTTTCCTAATGGTCGCTCGATCTTTTTTCTCACTCCTGCTCCGAAAATCATCAAATTTCGTGTAATAAATTGATTTTAATAATTTAAAATGTTTTTTTTTTAATTTATGTGAAAGAATTGAATAGTTAACTGAAAAATGCACAACAATGCGTTCGAATATCGCATCACTCCTACTTA</canonical_amplicon>
		<polymorphic_amplicon>CCGTACAGATTTTGCTAACAGCTAATATTTTTTCTAATGTATTGCATTGTTTTTTTTTTCAAATTTATATTCCTTTCCTAATGGTCGCTCGATCTTTTTTCTCACTCCTGCTCCGAAAATCATCAAATTTCGTGTAATAAATTGATTTTAATAATTTAAAATGTTTTTTTTTTAATMTATGTGAAAGAATTGAATAGTTAACTGAAAAATGCACAACAATGCGTTCGAATATCGCATCACTCCTACTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39008</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>314372</contig_pos>
        <strand>+</strand>
        <context>GGCATTCATT[A/C]ACTTCCGTCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTACCGCTTGGGTGTGTTTCAGAGATTTCAGGAGTTCCGAGGCATTCATT</left_flank>
        <right_flank>ACTTCCGTCGTCCGACTCTTAGTTTAAAATTCCACTTCCTGCTCATGTGC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTTCTTCCGGAAAAGGACCATAAAGAATTTTATATTATTGTTGTGCGAAAAAATTGGAGTCGAGACGCAGACAGTCGAACAAAAAATTTCTCTGCGTCTCCACCGAGAATGTGCTATTACCGCTTCGAGGTGCATATCGTATTCAGACTGCAAAAAATACTCTCTAACTCCAATTTTTTCGGACAACAATAATATTGCATCACTGCATGTATCATTTTTTAAAATTTCATACATCTCTGTTAAATGATCTTCACTCTCTCTAATGTGTAATTCTTATTTTGTATCTGAATAAACGTTGCCTTAAAACATGAATTCGTTCGTATTCAGTCGCCGACACACTGCGATTTTTTGCACATTAGTTGCAACTATTCGAAAATGGCGGGGTTAGCTAGATGATTTGATTCTCAAACGCTTTGGAAGTCCCAGTGTGGCTACAGAAGGAGGCAACTACCGCTTGGGTGTGTTTCAGAGATTTCAGGAGTTCCGAGGCATTCATTAACTTCCGTCGTCCGACTCTTAGTTTAAAATTCCACTTCCTGCTCATGTGCTAGAGTTTCCTCATTCTCAGAGTCTCAATTGAATTGATTTGCTAACATTTTTGGGTCCATACCAGGCTTGCTCGGAAAACCCTAACCGGAAAATCGGATACCCGAATTTTTTCCTGAAGTCACATTTAAATTATGTAATTAAGACATTGAACTCTTATTTTCTTATCAGGCATTTTCCCTCAATTTCTTATAAGATATATATTTATATAGGTTATTTCAACTGGATCAGAGCCAGTAATTGTGCCCCTAAGCGAAAATTTGTGCCCCTTAAGCATCTCTCATTTTTACCCGGGGAAATAACTATGTACCCCATAATCAAACCAGGTTGTACCCCCTAAGAATTTGTGCCCCCAAATCATTGAGCCGCCTTGGTTTTGTACCCCCAAATCACACTTTTTGTACCCCCTAATCTTTGTGCCTCCAAAGTTAAGTGCCATTTTCCATAAAACT</canonical>
            <polymorphic>TCTTTCTTCCGGAAAAGGACCATAAAGAATTTTATATTATTGTTGTGCGAAAAAATTGGAGTCGAGACGCAGACAGTCGAACAAAAAATTTCTCTGCGTCTCCACCGAGAATGTGCTATTACCGCTTCGAGGTGCATATCGTATTCAGACTGCAAAAAATACTCTCTAACTCCAATTTTTTCGGACAACAATAATATTGCATCACTGCATGTATCATTTTTTAAAATTTCATACATCTCTGTTAAATGATCTTCACTCTCTCTAATGTGTAATTCTTATTTTGTATCTGAATAAACGTTGCCTTAAAACATGAATTCGTTCGTATTCAGTCGCCGACACACTGCGATTTTTTGCACATTAGTTGCAACTATTCGAAAATGGCGGGGTTAGCTAGATGATTTGATTCTCAAACGCTTTGGAAGTCCCAGTGTGGCTACAGAAGGAGGCAACTACCGCTTGGGTGTGTTTCAGAGATTTCAGGAGTTCCGAGGCATTCATTMACTTCCGTCGTCCGACTCTTAGTTTAAAATTCCACTTCCTGCTCATGTGCTAGAGTTTCCTCATTCTCAGAGTCTCAATTGAATTGATTTGCTAACATTTTTGGGTCCATACCAGGCTTGCTCGGAAAACCCTAACCGGAAAATCGGATACCCGAATTTTTTCCTGAAGTCACATTTAAATTATGTAATTAAGACATTGAACTCTTATTTTCTTATCAGGCATTTTCCCTCAATTTCTTATAAGATATATATTTATATAGGTTATTTCAACTGGATCAGAGCCAGTAATTGTGCCCCTAAGCGAAAATTTGTGCCCCTTAAGCATCTCTCATTTTTACCCGGGGAAATAACTATGTACCCCATAATCAAACCAGGTTGTACCCCCTAAGAATTTGTGCCCCCAAATCATTGAGCCGCCTTGGTTTTGTACCCCCAAATCACACTTTTTGTACCCCCTAATCTTTGTGCCTCCAAAGTTAAGTGCCATTTTCCATAAAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>221 195 159 152 129 61 26 23 21 13</canonical_bands>
                <polymorphic_bands>221 221 159 152 129 61 23 21 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGTTGCCTTAAAACATGAAT</pcr_primer_p1>
		<pcr_primer_p2>CTAGCACATGAGCAGGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>CGTTGCCTTAAAACATGAATTCGTTCGTATTCAGTCGCCGACACACTGCGATTTTTTGCACATTAGTTGCAACTATTCGAAAATGGCGGGGTTAGCTAGATGATTTGATTCTCAAACGCTTTGGAAGTCCCAGTGTGGCTACAGAAGGAGGCAACTACCGCTTGGGTGTGTTTCAGAGATTTCAGGAGTTCCGAGGCATTCATTAACTTCCGTCGTCCGACTCTTAGTTTAAAATTCCACTTCCTGCTCATGTGCTAG</canonical_amplicon>
		<polymorphic_amplicon>CGTTGCCTTAAAACATGAATTCGTTCGTATTCAGTCGCCGACACACTGCGATTTTTTGCACATTAGTTGCAACTATTCGAAAATGGCGGGGTTAGCTAGATGATTTGATTCTCAAACGCTTTGGAAGTCCCAGTGTGGCTACAGAAGGAGGCAACTACCGCTTGGGTGTGTTTCAGAGATTTCAGGAGTTCCGAGGCATTCATTMACTTCCGTCGTCCGACTCTTAGTTTAAAATTCCACTTCCTGCTCATGTGCTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39009</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>314788</contig_pos>
        <strand></strand>
        <context>tcattgagcc[G/C]ccttggtttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TCAAACCAGGTTGTACCCCCTAAGAATTTGTGCCCCCAAATCATTGAGCC</left_flank>
        <right_flank>CCTTGGTTTTGTACCCCCAAATCACACTTTTTGTACCCCCTAATCTTTGT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAAGTCCCAGTGTGGCTACAGAAGGAGGCAACTACCGCTTGGGTGTGTTTCAGAGATTTCAGGAGTTCCGAGGCATTCATTAACTTCCGTCGTCCGACTCTTAGTTTAAAATTCCACTTCCTGCTCATGTGCTAGAGTTTCCTCATTCTCAGAGTCTCAATTGAATTGATTTGCTAACATTTTTGGGTCCATACCAGGCTTGCTCGGAAAACCCTAACCGGAAAATCGGATACCCGAATTTTTTCCTGAAGTCACATTTAAATTATGTAATTAAGACATTGAACTCTTATTTTCTTATCAGGCATTTTCCCTCAATTTCTTATAAGATATATATTTATATAGGTTATTTCAACTGGATCAGAGCCAGTAATTGTGCCCCTAAGCGAAAATTTGTGCCCCTTAAGCATCTCTCATTTTTACCCGGGGAAATAACTATGTACCCCATAATCAAACCAGGTTGTACCCCCTAAGAATTTGTGCCCCCAAATCATTGAGCCGCCTTGGTTTTGTACCCCCAAATCACACTTTTTGTACCCCCTAATCTTTGTGCCTCCAAAGTTAAGTGCCATTTTCCATAAAACTTTTTCTTCAGAAAAAATCGGAAATTTTTTTCGGAAAACAGAATTCGGAAAATTCGGAATTCCGTCGGAAAATTTTTTCCGAAAAAAATCGGATTATCCGTTTTCCGACTCCGAGCAAGCCTGGTTCATTCTCCGGGGTGAGGAACAACTTGTTCACGGCACGGTCTCCCACAGAACATTTCCGAATTGCAAACAGAACATTTCCGAATTGTATGGTCCTTTTCCGGAAGAAAAAGTTTCAAAAATGGTCATTTTTGAAAATTTTTTACAGAAAAAATGTATCTCCTATTTCAGTTTTTGACATTTCTAGGAGTTCTATAGCTCAAAAGAACCGGAATAATTTATTCTTCATTGTGTATGGATGAATTTTGTGATTCGTCTGATTGTCTGATAAAACTTTTTTATAATCAAAAAACC</canonical>
            <polymorphic>TGGAAGTCCCAGTGTGGCTACAGAAGGAGGCAACTACCGCTTGGGTGTGTTTCAGAGATTTCAGGAGTTCCGAGGCATTCATTAACTTCCGTCGTCCGACTCTTAGTTTAAAATTCCACTTCCTGCTCATGTGCTAGAGTTTCCTCATTCTCAGAGTCTCAATTGAATTGATTTGCTAACATTTTTGGGTCCATACCAGGCTTGCTCGGAAAACCCTAACCGGAAAATCGGATACCCGAATTTTTTCCTGAAGTCACATTTAAATTATGTAATTAAGACATTGAACTCTTATTTTCTTATCAGGCATTTTCCCTCAATTTCTTATAAGATATATATTTATATAGGTTATTTCAACTGGATCAGAGCCAGTAATTGTGCCCCTAAGCGAAAATTTGTGCCCCTTAAGCATCTCTCATTTTTACCCGGGGAAATAACTATGTACCCCATAATCAAACCAGGTTGTACCCCCTAAGAATTTGTGCCCCCAAATCATTGAGCCSCCTTGGTTTTGTACCCCCAAATCACACTTTTTGTACCCCCTAATCTTTGTGCCTCCAAAGTTAAGTGCCATTTTCCATAAAACTTTTTCTTCAGAAAAAATCGGAAATTTTTTTCGGAAAACAGAATTCGGAAAATTCGGAATTCCGTCGGAAAATTTTTTCCGAAAAAAATCGGATTATCCGTTTTCCGACTCCGAGCAAGCCTGGTTCATTCTCCGGGGTGAGGAACAACTTGTTCACGGCACGGTCTCCCACAGAACATTTCCGAATTGCAAACAGAACATTTCCGAATTGTATGGTCCTTTTCCGGAAGAAAAAGTTTCAAAAATGGTCATTTTTGAAAATTTTTTACAGAAAAAATGTATCTCCTATTTCAGTTTTTGACATTTCTAGGAGTTCTATAGCTCAAAAGAACCGGAATAATTTATTCTTCATTGTGTATGGATGAATTTTGTGATTCGTCTGATTGTCTGATAAAACTTTTTTATAATCAAAAAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>502 461 37</canonical_bands>
                <polymorphic_bands>963 37</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGGTTATTTCAACTGGATCAGA</pcr_primer_p1>
		<pcr_primer_p2>GAAGAAAAAGTTTTATGGAAAATG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TAGGTTATTTCAACTGGATCAGAGCCAGTAATTGTGCCCCTAAGCGAAAATTTGTGCCCCTTAAGCATCTCTCATTTTTACCCGGGGAAATAACTATGTACCCCATAATCAAACCAGGTTGTACCCCCTAAGAATTTGTGCCCCCAAATCATTGAGCCGCCTTGGTTTTGTACCCCCAAATCACACTTTTTGTACCCCCTAATCTTTGTGCCTCCAAAGTTAAGTGCCATTTTCCATAAAACTTTTTCTTC</canonical_amplicon>
		<polymorphic_amplicon>TAGGTTATTTCAACTGGATCAGAGCCAGTAATTGTGCCCCTAAGCGAAAATTTGTGCCCCTTAAGCATCTCTCATTTTTACCCGGGGAAATAACTATGTACCCCATAATCAAACCAGGTTGTACCCCCTAAGAATTTGTGCCCCCAAATCATTGAGCCSCCTTGGTTTTGTACCCCCAAATCACACTTTTTGTACCCCCTAATCTTTGTGCCTCCAAAGTTAAGTGCCATTTTCCATAAAACTTTTTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39010</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>330972</contig_pos>
        <strand>+</strand>
        <context>GCCTGGTGAT[C/T]AACTAGCAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAAATTTAAATTCAAAATCACATCAAAAATAGGGATACCTGCCTGGTGAT</left_flank>
        <right_flank>AACTAGCAAATCTTTAACTGTAAAATCTCCAATGATTAGCTTGATCAACT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGCGTCGAGCTGAGCCAACATATCTTCCTTGTCCAGAACAACTTTAAGGATTTCCTCATATAGCCAACGAATGCATGAAGCATCAGCAGAGATACCCGCTCGTTCGGTAGCAATCTGAATGAAAATTCAAATTATAATAGATAAATTCGAGAACAAAGTTACTGAAAAAATGCTAGCTCTATTCATAGCGTTGTTTCTTCCGGTGTTATTCTTCAGTATGAATTTCAACTCATCACAAATCTTTTCATTATCGACAAGATGTGCTAGAAGACGTCCGATTTCTTCTCCAGCATCGCTGTCAGTAATTCTACGAGCAAATGCGATTCCAACAGCGATTGATTCCGTTTTCAGAAACGGCAAAGCGCCTTCTTTTTCACGAATAATACGAGCCACATGACGAAGAATATTGGGATGAGCTGATGGAATGAATTCGAGAAGAACCACCTGCCAAATTTAAATTCAAAATCACATCAAAAATAGGGATACCTGCCTGGTGATCAACTAGCAAATCTTTAACTGTAAAATCTCCAATGATTAGCTTGATCAACTGATTAGTGCTGAAATCATCAAAAGCTGCACAGTTCTCAGACATCTCGTCGGTTCTGAAAGATAGGAAACCATTTTAAAAAGATCTTCAATTTGAAGACTTGATGACTTACTCCATTTGCTGATTTCCTTCAGTTTGCATCTTCACCAAGTTTTCTAATATTTCCCAACCCTTTTTTGAGTTTCGATTAGAGACATAATCATTTCTCCAACCCTTAAAAACAATATAAAATAAACAATTGTATGCTGAAACTCCTCACTTCGATTGCATTTTCATATCCGACGGCACTAGTCATCTGTATGAAATTTTGGTTTAGAGAAGAAGTGAGTTTGGAAAAAATAGCAGAACGGAAGAGTACTGTAGTCTTTCAAAAACAAATATAACAAGATCGCAGTTTTCATTGAAGGTATTAACCCGTTGTGTAAGTGAAGTCATTAAGAATGTTATATACA</canonical>
            <polymorphic>TAGCGTCGAGCTGAGCCAACATATCTTCCTTGTCCAGAACAACTTTAAGGATTTCCTCATATAGCCAACGAATGCATGAAGCATCAGCAGAGATACCCGCTCGTTCGGTAGCAATCTGAATGAAAATTCAAATTATAATAGATAAATTCGAGAACAAAGTTACTGAAAAAATGCTAGCTCTATTCATAGCGTTGTTTCTTCCGGTGTTATTCTTCAGTATGAATTTCAACTCATCACAAATCTTTTCATTATCGACAAGATGTGCTAGAAGACGTCCGATTTCTTCTCCAGCATCGCTGTCAGTAATTCTACGAGCAAATGCGATTCCAACAGCGATTGATTCCGTTTTCAGAAACGGCAAAGCGCCTTCTTTTTCACGAATAATACGAGCCACATGACGAAGAATATTGGGATGAGCTGATGGAATGAATTCGAGAAGAACCACCTGCCAAATTTAAATTCAAAATCACATCAAAAATAGGGATACCTGCCTGGTGATYAACTAGCAAATCTTTAACTGTAAAATCTCCAATGATTAGCTTGATCAACTGATTAGTGCTGAAATCATCAAAAGCTGCACAGTTCTCAGACATCTCGTCGGTTCTGAAAGATAGGAAACCATTTTAAAAAGATCTTCAATTTGAAGACTTGATGACTTACTCCATTTGCTGATTTCCTTCAGTTTGCATCTTCACCAAGTTTTCTAATATTTCCCAACCCTTTTTTGAGTTTCGATTAGAGACATAATCATTTCTCCAACCCTTAAAAACAATATAAAATAAACAATTGTATGCTGAAACTCCTCACTTCGATTGCATTTTCATATCCGACGGCACTAGTCATCTGTATGAAATTTTGGTTTAGAGAAGAAGTGAGTTTGGAAAAAATAGCAGAACGGAAGAGTACTGTAGTCTTTCAAAAACAAATATAACAAGATCGCAGTTTTCATTGAAGGTATTAACCCGTTGTGTAAGTGAAGTCATTAAGAATGTTATATACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>496 458 46</canonical_bands>
                <polymorphic_bands>542 458</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>496 304 88 66 46</canonical_bands>
                <polymorphic_bands>542 304 88 66</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATAATACGAGCCACATGAC</pcr_primer_p1>
		<pcr_primer_p2>TAAAATGGTTTCCTATCTTTCAG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAATAATACGAGCCACATGACGAAGAATATTGGGATGAGCTGATGGAATGAATTCGAGAAGAACCACCTGCCAAATTTAAATTCAAAATCACATCAAAAATAGGGATACCTGCCTGGTGATCAACTAGCAAATCTTTAACTGTAAAATCTCCAATGATTAGCTTGATCAACTGATTAGTGCTGAAATCATCAAAAGCTGCACAGTTCTCAGACATCTCGTCGGTTCTGAAAGATAGGAAACCATTTTA</canonical_amplicon>
		<polymorphic_amplicon>GAATAATACGAGCCACATGACGAAGAATATTGGGATGAGCTGATGGAATGAATTCGAGAAGAACCACCTGCCAAATTTAAATTCAAAATCACATCAAAAATAGGGATACCTGCCTGGTGATYAACTAGCAAATCTTTAACTGTAAAATCTCCAATGATTAGCTTGATCAACTGATTAGTGCTGAAATCATCAAAAGCTGCACAGTTCTCAGACATCTCGTCGGTTCTGAAAGATAGGAAACCATTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39011</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>331099</contig_pos>
        <strand>+</strand>
        <context>AACCATTTTA[A/T]AAAGATCTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCACAGTTCTCAGACATCTCGTCGGTTCTGAAAGATAGGAAACCATTTTA</left_flank>
        <right_flank>AAAGATCTTCAATTTGAAGACTTGATGACTTACTCCATTTGCTGATTTCC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAATTATAATAGATAAATTCGAGAACAAAGTTACTGAAAAAATGCTAGCTCTATTCATAGCGTTGTTTCTTCCGGTGTTATTCTTCAGTATGAATTTCAACTCATCACAAATCTTTTCATTATCGACAAGATGTGCTAGAAGACGTCCGATTTCTTCTCCAGCATCGCTGTCAGTAATTCTACGAGCAAATGCGATTCCAACAGCGATTGATTCCGTTTTCAGAAACGGCAAAGCGCCTTCTTTTTCACGAATAATACGAGCCACATGACGAAGAATATTGGGATGAGCTGATGGAATGAATTCGAGAAGAACCACCTGCCAAATTTAAATTCAAAATCACATCAAAAATAGGGATACCTGCCTGGTGATCAACTAGCAAATCTTTAACTGTAAAATCTCCAATGATTAGCTTGATCAACTGATTAGTGCTGAAATCATCAAAAGCTGCACAGTTCTCAGACATCTCGTCGGTTCTGAAAGATAGGAAACCATTTTAAAAAGATCTTCAATTTGAAGACTTGATGACTTACTCCATTTGCTGATTTCCTTCAGTTTGCATCTTCACCAAGTTTTCTAATATTTCCCAACCCTTTTTTGAGTTTCGATTAGAGACATAATCATTTCTCCAACCCTTAAAAACAATATAAAATAAACAATTGTATGCTGAAACTCCTCACTTCGATTGCATTTTCATATCCGACGGCACTAGTCATCTGTATGAAATTTTGGTTTAGAGAAGAAGTGAGTTTGGAAAAAATAGCAGAACGGAAGAGTACTGTAGTCTTTCAAAAACAAATATAACAAGATCGCAGTTTTCATTGAAGGTATTAACCCGTTGTGTAAGTGAAGTCATTAAGAATGTTATATACATGTGGACAAAGTCAGAATAAACATGAATTGAATCAGTTTTTGACAGGTCTGTAGTAGAGTAGAAGTTCTCCGCTTTGTTTCCAATAAAAGTGTTTGACAGTTCGTAGATCCGTTTCTGGTTCCAACT</canonical>
            <polymorphic>TCAAATTATAATAGATAAATTCGAGAACAAAGTTACTGAAAAAATGCTAGCTCTATTCATAGCGTTGTTTCTTCCGGTGTTATTCTTCAGTATGAATTTCAACTCATCACAAATCTTTTCATTATCGACAAGATGTGCTAGAAGACGTCCGATTTCTTCTCCAGCATCGCTGTCAGTAATTCTACGAGCAAATGCGATTCCAACAGCGATTGATTCCGTTTTCAGAAACGGCAAAGCGCCTTCTTTTTCACGAATAATACGAGCCACATGACGAAGAATATTGGGATGAGCTGATGGAATGAATTCGAGAAGAACCACCTGCCAAATTTAAATTCAAAATCACATCAAAAATAGGGATACCTGCCTGGTGATCAACTAGCAAATCTTTAACTGTAAAATCTCCAATGATTAGCTTGATCAACTGATTAGTGCTGAAATCATCAAAAGCTGCACAGTTCTCAGACATCTCGTCGGTTCTGAAAGATAGGAAACCATTTTAWAAAGATCTTCAATTTGAAGACTTGATGACTTACTCCATTTGCTGATTTCCTTCAGTTTGCATCTTCACCAAGTTTTCTAATATTTCCCAACCCTTTTTTGAGTTTCGATTAGAGACATAATCATTTCTCCAACCCTTAAAAACAATATAAAATAAACAATTGTATGCTGAAACTCCTCACTTCGATTGCATTTTCATATCCGACGGCACTAGTCATCTGTATGAAATTTTGGTTTAGAGAAGAAGTGAGTTTGGAAAAAATAGCAGAACGGAAGAGTACTGTAGTCTTTCAAAAACAAATATAACAAGATCGCAGTTTTCATTGAAGGTATTAACCCGTTGTGTAAGTGAAGTCATTAAGAATGTTATATACATGTGGACAAAGTCAGAATAAACATGAATTGAATCAGTTTTTGACAGGTCTGTAGTAGAGTAGAAGTTCTCCGCTTTGTTTCCAATAAAAGTGTTTGACAGTTCGTAGATCCGTTTCTGGTTCCAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 329 169</canonical_bands>
                <polymorphic_bands>671 329</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>328 195 144 139 110 59 25</canonical_bands>
                <polymorphic_bands>328 249 195 144 59 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTAAAATCTCCAATGATTAGC</pcr_primer_p1>
		<pcr_primer_p2>TTAAGGGTTGGAGAAATGATTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTGTAAAATCTCCAATGATTAGCTTGATCAACTGATTAGTGCTGAAATCATCAAAAGCTGCACAGTTCTCAGACATCTCGTCGGTTCTGAAAGATAGGAAACCATTTTAAAAAGATCTTCAATTTGAAGACTTGATGACTTACTCCATTTGCTGATTTCCTTCAGTTTGCATCTTCACCAAGTTTTCTAATATTTCCCAACCCTTTTTTGAGTTTCGATTAGAGACATAATCATTTCTCCAACCCTTAA</canonical_amplicon>
		<polymorphic_amplicon>CTGTAAAATCTCCAATGATTAGCTTGATCAACTGATTAGTGCTGAAATCATCAAAAGCTGCACAGTTCTCAGACATCTCGTCGGTTCTGAAAGATAGGAAACCATTTTAWAAAGATCTTCAATTTGAAGACTTGATGACTTACTCCATTTGCTGATTTCCTTCAGTTTGCATCTTCACCAAGTTTTCTAATATTTCCCAACCCTTTTTTGAGTTTCGATTAGAGACATAATCATTTCTCCAACCCTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39012</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>401595</contig_pos>
        <strand>+</strand>
        <context>ACCTTTTTTT[C/T]GAAAATTGGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAAACAAGTGATTCACTTAGAAGCTGTCAACAACGGGAGACCTTTTTTT</left_flank>
        <right_flank>GAAAATTGGGAAAACCATTTACTTTCGGAAATCGTAGGATCTAGTCAACG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAATACAGATGGACGGCTCTTTTGTATCACACTTTCTGATTCAAGTTCTCATATGAGCCATAGTACTCAATTGTGCTCATCCTAACATTACGAACGTAAGGGAGGTGCAGTAGTCCCGATAGCAAAAACATCGTCCCCCATCCTTCCTGCCTACAGATGCATAAACACGACGGGCAGGTGTCAAACAAAAAGGTTTTGAAGTGGTTGACGGGGGATGCAGGTAGAAATTGAATTGGGGAGGCTTGTTGTGTGGAAAAGAAGCAACGAAGAACGACCAGTTTGTACTAGACGCCTATAGGTGATGTGATCAGGATGATGATTCGTGCCCAGTTGTGTTTGGGGCTGGATCTGACAACAAACTGAATTGAATTGTATGCTAAAAGAGTTTTTTCAGAGTATCTACACAAGAAGAAAGTGAATACTAATGTGTTAAGTTTACGGAAAATAGATAAACAAGTGATTCACTTAGAAGCTGTCAACAACGGGAGACCTTTTTTTCGAAAATTGGGAAAACCATTTACTTTCGGAAATCGTAGGATCTAGTCAACGAATGGGAAAAAAGTCGAAAATGGTTTCAGATTCTTTCGAAAAAAGGTTTTCAGTTCAAAATCACATTAAGGGATCAAAAACGACAAATAGATTTCCAGCGCAAAATCCCAGTAATCGTTTCAGAGACAGCAAGTTAAATCAGGAAAATGTTAAAGTTCTTTTAAGACTTAGAATTAGAGTTGCAAAGCTGTCCAAAAGTGGGAATTGTACAAAAAATCACAAAAAAGTGTTCACAAAAAAAAGCGAACGGAAAACAATCAATACACTCATTCGAACAGGCCCGTCACCATGGTTGAGAGGATGGTGAAAGGTGAACAAAGAAACGCAGAGGACCCCCGCAATAATGCAATTACGTCATTGGTGACCTTAGGAGGTGGAAAAGAGAACGGACGGACGGACGGGGTGGTGGTGGTGGGTGACGATTCGGGATGAATAAAAAGAAGAACAGGA</canonical>
            <polymorphic>CAAATACAGATGGACGGCTCTTTTGTATCACACTTTCTGATTCAAGTTCTCATATGAGCCATAGTACTCAATTGTGCTCATCCTAACATTACGAACGTAAGGGAGGTGCAGTAGTCCCGATAGCAAAAACATCGTCCCCCATCCTTCCTGCCTACAGATGCATAAACACGACGGGCAGGTGTCAAACAAAAAGGTTTTGAAGTGGTTGACGGGGGATGCAGGTAGAAATTGAATTGGGGAGGCTTGTTGTGTGGAAAAGAAGCAACGAAGAACGACCAGTTTGTACTAGACGCCTATAGGTGATGTGATCAGGATGATGATTCGTGCCCAGTTGTGTTTGGGGCTGGATCTGACAACAAACTGAATTGAATTGTATGCTAAAAGAGTTTTTTCAGAGTATCTACACAAGAAGAAAGTGAATACTAATGTGTTAAGTTTACGGAAAATAGATAAACAAGTGATTCACTTAGAAGCTGTCAACAACGGGAGACCTTTTTTTYGAAAATTGGGAAAACCATTTACTTTCGGAAATCGTAGGATCTAGTCAACGAATGGGAAAAAAGTCGAAAATGGTTTCAGATTCTTTCGAAAAAAGGTTTTCAGTTCAAAATCACATTAAGGGATCAAAAACGACAAATAGATTTCCAGCGCAAAATCCCAGTAATCGTTTCAGAGACAGCAAGTTAAATCAGGAAAATGTTAAAGTTCTTTTAAGACTTAGAATTAGAGTTGCAAAGCTGTCCAAAAGTGGGAATTGTACAAAAAATCACAAAAAAGTGTTCACAAAAAAAAGCGAACGGAAAACAATCAATACACTCATTCGAACAGGCCCGTCACCATGGTTGAGAGGATGGTGAAAGGTGAACAAAGAAACGCAGAGGACCCCCGCAATAATGCAATTACGTCATTGGTGACCTTAGGAGGTGGAAAAGAGAACGGACGGACGGACGGGGTGGTGGTGGTGGGTGACGATTCGGGATGAATAAAAAGAAGAACAGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>499 235 179 87</canonical_bands>
                <polymorphic_bands>586 235 179</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 235 178 65 22</canonical_bands>
                <polymorphic_bands>565 235 178 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTGAATTGTATGCTAAAAGAG</pcr_primer_p1>
		<pcr_primer_p2>GTGATTTTGAACTGAAAACCTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GAATTGAATTGTATGCTAAAAGAGTTTTTTCAGAGTATCTACACAAGAAGAAAGTGAATACTAATGTGTTAAGTTTACGGAAAATAGATAAACAAGTGATTCACTTAGAAGCTGTCAACAACGGGAGACCTTTTTTTCGAAAATTGGGAAAACCATTTACTTTCGGAAATCGTAGGATCTAGTCAACGAATGGGAAAAAAGTCGAAAATGGTTTCAGATTCTTTCGAAAAAAGGTTTTCAGTTCAAAATCAC</canonical_amplicon>
		<polymorphic_amplicon>GAATTGAATTGTATGCTAAAAGAGTTTTTTCAGAGTATCTACACAAGAAGAAAGTGAATACTAATGTGTTAAGTTTACGGAAAATAGATAAACAAGTGATTCACTTAGAAGCTGTCAACAACGGGAGACCTTTTTTTYGAAAATTGGGAAAACCATTTACTTTCGGAAATCGTAGGATCTAGTCAACGAATGGGAAAAAAGTCGAAAATGGTTTCAGATTCTTTCGAAAAAAGGTTTTCAGTTCAAAATCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39014</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>446574</contig_pos>
        <strand></strand>
        <context>ataacattga[T/C]aggaacagag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGATATCATGATAAACGTTTTATCCGTGGACAACTTTTTTATAACATTGA</left_flank>
        <right_flank>AGGAACAGAGATAAATTGGCTCAAAGTTAAAAATTCTGGGGCCCTTCTAT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCTGTTATATAAGTGCCCCCTAACTTTCAACTTTGATCCTATTTATCTCGGTTCCTACGAAAAAAATCAAGAAGTATTGTCAACTGATAAAATGTTTATCATAATCAGAAGTATTTTGTCAGTTGTAAATACTATCTATCAGTCGTAAATAGTTTTTAATACCTCTTATATTAGCCGAGATGAACCGGCTCAAAGTTGACAGTACGGGGGCTTTTTTGTTGTAAATTTTACCGTAGTTGAGGTTTCTGGAAACTCTAACGTTTCGGAAAATATGCTGTCAACGGTTGTCTTTAAAAGTATTGCATCTTAAACCAAGGCTTTATTATTAAACCTGCTTTCGTACTGTAAAATCTGTAATAGAAAGGCCCACACACGGTCAAGTTGGGGCTCAATTTTCTCTCAAATCCTATGCAAGATATCAAAAATGTACCAACTGACAAAAAACTTCTGATATCATGATAAACGTTTTATCCGTGGACAACTTTTTTATAACATTGATAGGAACAGAGATAAATTGGCTCAAAGTTAAAAATTCTGGGGCCCTTCTATCACAGGCTTTACGGTATTCTGATCTCTCGGTCCCTTTCCCCAGTCCTTTTACAAAAATTTCAATTAAAAAGATTGGAAAAAAGTGAAAAGACAAATGTAGGCTGCCCAGGTGCAAAAAGGTAGGTTGAATGACAAATCAACAATCTCAAATGACCCGCGAAATGTACTCTCTCTTTTTTGACACACATTTTCCATTTGCTTTTGGTCATTTAACACAGGTGTTCATTTTCACCCTAAATTGTTCTTTTTTCTTTCAGCTGTACACCGCTATTTCGGCCGCACTTCTCTCCTACATGATTGCGATTTTCTTGGATATATTCGTGACAAGACCCATCAGATATCTAATTTATCCGGAACAAATGCATCGATATGCACAAGCACATACACAGGAACAACAGAGAGCAGCAGCGGTTTAGAGAAAAATAGGAGAAGAGCAACAGATGACAACGG</canonical>
            <polymorphic>ACCTGTTATATAAGTGCCCCCTAACTTTCAACTTTGATCCTATTTATCTCGGTTCCTACGAAAAAAATCAAGAAGTATTGTCAACTGATAAAATGTTTATCATAATCAGAAGTATTTTGTCAGTTGTAAATACTATCTATCAGTCGTAAATAGTTTTTAATACCTCTTATATTAGCCGAGATGAACCGGCTCAAAGTTGACAGTACGGGGGCTTTTTTGTTGTAAATTTTACCGTAGTTGAGGTTTCTGGAAACTCTAACGTTTCGGAAAATATGCTGTCAACGGTTGTCTTTAAAAGTATTGCATCTTAAACCAAGGCTTTATTATTAAACCTGCTTTCGTACTGTAAAATCTGTAATAGAAAGGCCCACACACGGTCAAGTTGGGGCTCAATTTTCTCTCAAATCCTATGCAAGATATCAAAAATGTACCAACTGACAAAAAACTTCTGATATCATGATAAACGTTTTATCCGTGGACAACTTTTTTATAACATTGAYAGGAACAGAGATAAATTGGCTCAAAGTTAAAAATTCTGGGGCCCTTCTATCACAGGCTTTACGGTATTCTGATCTCTCGGTCCCTTTCCCCAGTCCTTTTACAAAAATTTCAATTAAAAAGATTGGAAAAAAGTGAAAAGACAAATGTAGGCTGCCCAGGTGCAAAAAGGTAGGTTGAATGACAAATCAACAATCTCAAATGACCCGCGAAATGTACTCTCTCTTTTTTGACACACATTTTCCATTTGCTTTTGGTCATTTAACACAGGTGTTCATTTTCACCCTAAATTGTTCTTTTTTCTTTCAGCTGTACACCGCTATTTCGGCCGCACTTCTCTCCTACATGATTGCGATTTTCTTGGATATATTCGTGACAAGACCCATCAGATATCTAATTTATCCGGAACAAATGCATCGATATGCACAAGCACATACACAGGAACAACAGAGAGCAGCAGCGGTTTAGAGAAAAATAGGAGAAGAGCAACAGATGACAACGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTCTTTAAAAGTATTGCATCTTA</pcr_primer_p1>
		<pcr_primer_p2>TTGAAATTTTTGTAAAAGGACTG</pcr_primer_p2>
		<pcr_amplicon_size>328</pcr_amplicon_size>
		<canonical_amplicon>TTGTCTTTAAAAGTATTGCATCTTAAACCAAGGCTTTATTATTAAACCTGCTTTCGTACTGTAAAATCTGTAATAGAAAGGCCCACACACGGTCAAGTTGGGGCTCAATTTTCTCTCAAATCCTATGCAAGATATCAAAAATGTACCAACTGACAAAAAACTTCTGATATCATGATAAACGTTTTATCCGTGGACAACTTTTTTATAACATTGATAGGAACAGAGATAAATTGGCTCAAAGTTAAAAATTCTGGGGCCCTTCTATCACAGGCTTTACGGTATTCTGATCTCTCGGTCCCTTTCCCCAGTCCTTTTACAAAAATTTCAA</canonical_amplicon>
		<polymorphic_amplicon>TTGTCTTTAAAAGTATTGCATCTTAAACCAAGGCTTTATTATTAAACCTGCTTTCGTACTGTAAAATCTGTAATAGAAAGGCCCACACACGGTCAAGTTGGGGCTCAATTTTCTCTCAAATCCTATGCAAGATATCAAAAATGTACCAACTGACAAAAAACTTCTGATATCATGATAAACGTTTTATCCGTGGACAACTTTTTTATAACATTGAYAGGAACAGAGATAAATTGGCTCAAAGTTAAAAATTCTGGGGCCCTTCTATCACAGGCTTTACGGTATTCTGATCTCTCGGTCCCTTTCCCCAGTCCTTTTACAAAAATTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39017</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>505836</contig_pos>
        <strand>+</strand>
        <context>TCAAATATAG[A/G]ACCTCATTAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTGCGAGTAGAAATCCAGACTGTCGGTGTACTGAAAATTTTCAAATATAG</left_flank>
        <right_flank>ACCTCATTAAATTTTGAATTTGGTACCTTGAGAATTCTGTGGAACTCCTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATAATTTGGTTGGACACAACGAAAGGCTTTCTGAGAAATTATACTGAACTGATTTATTACGATAATGATACGATTACACAAAGAAAATTCAAGTTTTATTCTCTGATTTTTTAGATGCATTAGCTCCAGAAGATTCCTTTTTCGTCTTTTCTTTTTTCTCCTTCTCACTTTTCTTTGCTTCTCTTTTCTTCGTTCTATTCTTGGCATCTTCCTTTTCTTCCTTTTTCTTCTGTCTTTTCATACTATCCTTTTCCTTTTTAGTCTTATTGTTTGATCCTTCAGCTGACATTCTCATCTCCACTTCCAAATCTATCACTTTTCCATCGCCTGGAACTTCGATGGGTCCAATGTAAGGAACATCTGGATCCCAGTCTATCGGATCCGCATCCTTGATTTTGTTGGCTGTGGCTGCGTGCTGGATACAGAAATAAACGAATTGATAATCAGGCTGCGAGTAGAAATCCAGACTGTCGGTGTACTGAAAATTTTCAAATATAGGACCTCATTAAATTTTGAATTTGGTACCTTGAGAATTCTGTGGAACTCCTTTCTCGGACAATTGTAATACATATCCTCAATAATCTCATCCTTGCTTCTCAACTCTTTTTTGAATCGAAGAACCTTGTCTCTGTCTGACGCCTTCAATTTTCTCCATGGCAACCCTCCTGAAGTCCATTCTACAACCATATAAAGCCATGATTCAATATCATCCTTCCGTCCAGTATCCAGTTCTAACATTGAATTTAAAGGAGCGTAACGAGTAGTTCCTCTGAATGGAGCCGATTTTCTCTGAGTTCTTATTTTCCCCTCTTCTCTTTTCACAAATTCACGACATAATCCGAAATCTAGCATGAAAATTGTGTGATGTTCGTTGGATTCTACTCGGCCAGCTGCGAAGTTTCCGGGTTTTATGTCACGATGTAGATAACCAAACTGAAATATTTTATTTTTTTTTAGATAAATTAATTTTGAAACTCTTACTCTATGCAACTGTTCGAT</canonical>
            <polymorphic>AATAATTTGGTTGGACACAACGAAAGGCTTTCTGAGAAATTATACTGAACTGATTTATTACGATAATGATACGATTACACAAAGAAAATTCAAGTTTTATTCTCTGATTTTTTAGATGCATTAGCTCCAGAAGATTCCTTTTTCGTCTTTTCTTTTTTCTCCTTCTCACTTTTCTTTGCTTCTCTTTTCTTCGTTCTATTCTTGGCATCTTCCTTTTCTTCCTTTTTCTTCTGTCTTTTCATACTATCCTTTTCCTTTTTAGTCTTATTGTTTGATCCTTCAGCTGACATTCTCATCTCCACTTCCAAATCTATCACTTTTCCATCGCCTGGAACTTCGATGGGTCCAATGTAAGGAACATCTGGATCCCAGTCTATCGGATCCGCATCCTTGATTTTGTTGGCTGTGGCTGCGTGCTGGATACAGAAATAAACGAATTGATAATCAGGCTGCGAGTAGAAATCCAGACTGTCGGTGTACTGAAAATTTTCAAATATAGRACCTCATTAAATTTTGAATTTGGTACCTTGAGAATTCTGTGGAACTCCTTTCTCGGACAATTGTAATACATATCCTCAATAATCTCATCCTTGCTTCTCAACTCTTTTTTGAATCGAAGAACCTTGTCTCTGTCTGACGCCTTCAATTTTCTCCATGGCAACCCTCCTGAAGTCCATTCTACAACCATATAAAGCCATGATTCAATATCATCCTTCCGTCCAGTATCCAGTTCTAACATTGAATTTAAAGGAGCGTAACGAGTAGTTCCTCTGAATGGAGCCGATTTTCTCTGAGTTCTTATTTTCCCCTCTTCTCTTTTCACAAATTCACGACATAATCCGAAATCTAGCATGAAAATTGTGTGATGTTCGTTGGATTCTACTCGGCCAGCTGCGAAGTTTCCGGGTTTTATGTCACGATGTAGATAACCAAACTGAAATATTTTATTTTTTTTTAGATAAATTAATTTTGAAACTCTTACTCTATGCAACTGTTCGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>501 343 156</canonical_bands>
                <polymorphic_bands>657 343</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>501 343 156</canonical_bands>
                <polymorphic_bands>657 343</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AGGWCCT</site>
                <isoschizomers>
                    <enzyme>Sse8647I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTCCAATGTAAGGAACATCT</pcr_primer_p1>
		<pcr_primer_p2>CAAGGATGAGATTATTGAGGATA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GGTCCAATGTAAGGAACATCTGGATCCCAGTCTATCGGATCCGCATCCTTGATTTTGTTGGCTGTGGCTGCGTGCTGGATACAGAAATAAACGAATTGATAATCAGGCTGCGAGTAGAAATCCAGACTGTCGGTGTACTGAAAATTTTCAAATATAGGACCTCATTAAATTTTGAATTTGGTACCTTGAGAATTCTGTGGAACTCCTTTCTCGGACAATTGTAATACATATCCTCAATAATCTCATCCTTG</canonical_amplicon>
		<polymorphic_amplicon>GGTCCAATGTAAGGAACATCTGGATCCCAGTCTATCGGATCCGCATCCTTGATTTTGTTGGCTGTGGCTGCGTGCTGGATACAGAAATAAACGAATTGATAATCAGGCTGCGAGTAGAAATCCAGACTGTCGGTGTACTGAAAATTTTCAAATATAGRACCTCATTAAATTTTGAATTTGGTACCTTGAGAATTCTGTGGAACTCCTTTCTCGGACAATTGTAATACATATCCTCAATAATCTCATCCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39018</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>511150</contig_pos>
        <strand>+</strand>
        <context>TCTAAAGAAA[A/G]CCCCTCTAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGACAGTATTTGGAGAAATTTTCTTATCCAAAGGCGGTTCTCTAAAGAAA</left_flank>
        <right_flank>CCCCTCTAATTTTATTTGGGTCCTCTACACTGGAATAGAGCCAAAAATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCACAAAATTCTGGTTACTTTAACTTCCGATTTATCTGTGTCTTTCCATTCTCCTCCCAAAAAGTATCTTCCCAATTCGATCACTTTTTGAAGAACCGCTTCAGAATCAGGAGAATGTTCAATGAAGAATTTCTGGAATCAGGAAAGATTTCAGCAAAATAAAACCATGTTTCTCACCTCTATTTCAGTCATTTTGGATTGTTGTACTTTCAGATTTTGGTTTTTTATTCTGAAAGTTTATTAAAATTAGAAAAGGCAATGGTTCTTATCGCTGTAGCTACTTTCTTTTATATGTCAAACTAACAAAGAATGTCTCCAAAATAACAAGAGGGAATGATGGAGCGCGTTTGCATCTTGGACTCAGGCATTCCCTTTTCGAAGAGACTAAAGAAGGGCATTTTTAATTCCATGTTTGTTTGATTTTTTTTTTCATTTTTTGGCCATTTGGGACAGTATTTGGAGAAATTTTCTTATCCAAAGGCGGTTCTCTAAAGAAAACCCCTCTAATTTTATTTGGGTCCTCTACACTGGAATAGAGCCAAAAATTATTAGTAACAGATGTCCATTTGTCAACAAAGAACACAGAAATCAAATAATAGTATGGTCAGCTATTTGGGTCACTTTCAATTGTAACTGGTTATCTGACTTTTTGAACTCTATTCTTATCACAATCGAATGAATAAAACATAATCAGAAATCATAAAAATGACAAATGAATACCAAAAGTCATAAATATTACATTTATTTTATTTCTCTTTGAACAAGAACACAACATAGATCAAAAACATTTCAAAGTGCCTTCTTCCACTTTTTCAACTCTTCGTAAATTTTTTGAGATCTTGGTTTCAAATGAAAATAAACTGCCAATCTATCCCGAGCTTGAACATCTAAATCCACCCCGTTTTCAAATTTTAAAAGTGCATGTTTCATAGCAGAGAGTGCCCAGAATAAATGAGTGAGAGGCCAGAAGAAGAGACACTCCTGGATTAGAGACTCCA</canonical>
            <polymorphic>ACTCACAAAATTCTGGTTACTTTAACTTCCGATTTATCTGTGTCTTTCCATTCTCCTCCCAAAAAGTATCTTCCCAATTCGATCACTTTTTGAAGAACCGCTTCAGAATCAGGAGAATGTTCAATGAAGAATTTCTGGAATCAGGAAAGATTTCAGCAAAATAAAACCATGTTTCTCACCTCTATTTCAGTCATTTTGGATTGTTGTACTTTCAGATTTTGGTTTTTTATTCTGAAAGTTTATTAAAATTAGAAAAGGCAATGGTTCTTATCGCTGTAGCTACTTTCTTTTATATGTCAAACTAACAAAGAATGTCTCCAAAATAACAAGAGGGAATGATGGAGCGCGTTTGCATCTTGGACTCAGGCATTCCCTTTTCGAAGAGACTAAAGAAGGGCATTTTTAATTCCATGTTTGTTTGATTTTTTTTTTCATTTTTTGGCCATTTGGGACAGTATTTGGAGAAATTTTCTTATCCAAAGGCGGTTCTCTAAAGAAARCCCCTCTAATTTTATTTGGGTCCTCTACACTGGAATAGAGCCAAAAATTATTAGTAACAGATGTCCATTTGTCAACAAAGAACACAGAAATCAAATAATAGTATGGTCAGCTATTTGGGTCACTTTCAATTGTAACTGGTTATCTGACTTTTTGAACTCTATTCTTATCACAATCGAATGAATAAAACATAATCAGAAATCATAAAAATGACAAATGAATACCAAAAGTCATAAATATTACATTTATTTTATTTCTCTTTGAACAAGAACACAACATAGATCAAAAACATTTCAAAGTGCCTTCTTCCACTTTTTCAACTCTTCGTAAATTTTTTGAGATCTTGGTTTCAAATGAAAATAAACTGCCAATCTATCCCGAGCTTGAACATCTAAATCCACCCCGTTTTCAAATTTTAAAAGTGCATGTTTCATAGCAGAGAGTGCCCAGAATAAATGAGTGAGAGGCCAGAAGAAGAGACACTCCTGGATTAGAGACTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTTTCGAAGAGACTAAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>ACCCAAATAGCTGACCATACTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CCTTTTCGAAGAGACTAAAGAAGGGCATTTTTAATTCCATGTTTGTTTGATTTTTTTTTTCATTTTTTGGCCATTTGGGACAGTATTTGGAGAAATTTTCTTATCCAAAGGCGGTTCTCTAAAGAAAACCCCTCTAATTTTATTTGGGTCCTCTACACTGGAATAGAGCCAAAAATTATTAGTAACAGATGTCCATTTGTCAACAAAGAACACAGAAATCAAATAATAGTATGGTCAGCTATTTGGGT</canonical_amplicon>
		<polymorphic_amplicon>CCTTTTCGAAGAGACTAAAGAAGGGCATTTTTAATTCCATGTTTGTTTGATTTTTTTTTTCATTTTTTGGCCATTTGGGACAGTATTTGGAGAAATTTTCTTATCCAAAGGCGGTTCTCTAAAGAAARCCCCTCTAATTTTATTTGGGTCCTCTACACTGGAATAGAGCCAAAAATTATTAGTAACAGATGTCCATTTGTCAACAAAGAACACAGAAATCAAATAATAGTATGGTCAGCTATTTGGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39019</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>511304</contig_pos>
        <strand>+</strand>
        <context>CTGACTTTTT[C/G]AACTCTATTC</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGGTCAGCTATTTGGGTCACTTTCAATTGTAACTGGTTATCTGACTTTTT</left_flank>
        <right_flank>AACTCTATTCTTATCACAATCGAATGAATAAAACATAATCAGAAATCATA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCAAAATAAAACCATGTTTCTCACCTCTATTTCAGTCATTTTGGATTGTTGTACTTTCAGATTTTGGTTTTTTATTCTGAAAGTTTATTAAAATTAGAAAAGGCAATGGTTCTTATCGCTGTAGCTACTTTCTTTTATATGTCAAACTAACAAAGAATGTCTCCAAAATAACAAGAGGGAATGATGGAGCGCGTTTGCATCTTGGACTCAGGCATTCCCTTTTCGAAGAGACTAAAGAAGGGCATTTTTAATTCCATGTTTGTTTGATTTTTTTTTTCATTTTTTGGCCATTTGGGACAGTATTTGGAGAAATTTTCTTATCCAAAGGCGGTTCTCTAAAGAAAACCCCTCTAATTTTATTTGGGTCCTCTACACTGGAATAGAGCCAAAAATTATTAGTAACAGATGTCCATTTGTCAACAAAGAACACAGAAATCAAATAATAGTATGGTCAGCTATTTGGGTCACTTTCAATTGTAACTGGTTATCTGACTTTTTGAACTCTATTCTTATCACAATCGAATGAATAAAACATAATCAGAAATCATAAAAATGACAAATGAATACCAAAAGTCATAAATATTACATTTATTTTATTTCTCTTTGAACAAGAACACAACATAGATCAAAAACATTTCAAAGTGCCTTCTTCCACTTTTTCAACTCTTCGTAAATTTTTTGAGATCTTGGTTTCAAATGAAAATAAACTGCCAATCTATCCCGAGCTTGAACATCTAAATCCACCCCGTTTTCAAATTTTAAAAGTGCATGTTTCATAGCAGAGAGTGCCCAGAATAAATGAGTGAGAGGCCAGAAGAAGAGACACTCCTGGATTAGAGACTCCAGTTCAGAGGATCGATCAGAGGGAATATGATTTTTGAGCTGAAAAATAGAATCATTAGGTATTTGCTAGTTTCTATTTGAACCGTATTATCAGCATCTAGATAAGCTTCGCATAGAATACGAATGATGGGAGAGTTATCAGTCAGATCTTCAATG</canonical>
            <polymorphic>AGCAAAATAAAACCATGTTTCTCACCTCTATTTCAGTCATTTTGGATTGTTGTACTTTCAGATTTTGGTTTTTTATTCTGAAAGTTTATTAAAATTAGAAAAGGCAATGGTTCTTATCGCTGTAGCTACTTTCTTTTATATGTCAAACTAACAAAGAATGTCTCCAAAATAACAAGAGGGAATGATGGAGCGCGTTTGCATCTTGGACTCAGGCATTCCCTTTTCGAAGAGACTAAAGAAGGGCATTTTTAATTCCATGTTTGTTTGATTTTTTTTTTCATTTTTTGGCCATTTGGGACAGTATTTGGAGAAATTTTCTTATCCAAAGGCGGTTCTCTAAAGAAAACCCCTCTAATTTTATTTGGGTCCTCTACACTGGAATAGAGCCAAAAATTATTAGTAACAGATGTCCATTTGTCAACAAAGAACACAGAAATCAAATAATAGTATGGTCAGCTATTTGGGTCACTTTCAATTGTAACTGGTTATCTGACTTTTTSAACTCTATTCTTATCACAATCGAATGAATAAAACATAATCAGAAATCATAAAAATGACAAATGAATACCAAAAGTCATAAATATTACATTTATTTTATTTCTCTTTGAACAAGAACACAACATAGATCAAAAACATTTCAAAGTGCCTTCTTCCACTTTTTCAACTCTTCGTAAATTTTTTGAGATCTTGGTTTCAAATGAAAATAAACTGCCAATCTATCCCGAGCTTGAACATCTAAATCCACCCCGTTTTCAAATTTTAAAAGTGCATGTTTCATAGCAGAGAGTGCCCAGAATAAATGAGTGAGAGGCCAGAAGAAGAGACACTCCTGGATTAGAGACTCCAGTTCAGAGGATCGATCAGAGGGAATATGATTTTTGAGCTGAAAAATAGAATCATTAGGTATTTGCTAGTTTCTATTTGAACCGTATTATCAGCATCTAGATAAGCTTCGCATAGAATACGAATGATGGGAGAGTTATCAGTCAGATCTTCAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAAAGAACACAGAAATCAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAGAGTTGAAAAAGTGGAAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACAAAGAACACAGAAATCAAATAATAGTATGGTCAGCTATTTGGGTCACTTTCAATTGTAACTGGTTATCTGACTTTTTGAACTCTATTCTTATCACAATCGAATGAATAAAACATAATCAGAAATCATAAAAATGACAAATGAATACCAAAAGTCATAAATATTACATTTATTTTATTTCTCTTTGAACAAGAACACAACATAGATCAAAAACATTTCAAAGTGCCTTCTTCCACTTTTTCAACTCTT</canonical_amplicon>
		<polymorphic_amplicon>AACAAAGAACACAGAAATCAAATAATAGTATGGTCAGCTATTTGGGTCACTTTCAATTGTAACTGGTTATCTGACTTTTTSAACTCTATTCTTATCACAATCGAATGAATAAAACATAATCAGAAATCATAAAAATGACAAATGAATACCAAAAGTCATAAATATTACATTTATTTTATTTCTCTTTGAACAAGAACACAACATAGATCAAAAACATTTCAAAGTGCCTTCTTCCACTTTTTCAACTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39020</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>511539</contig_pos>
        <strand>+</strand>
        <context>AGCTTGAACA[C/T]CTAAATCCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTTGGTTTCAAATGAAAATAAACTGCCAATCTATCCCGAGCTTGAACA</left_flank>
        <right_flank>CTAAATCCACCCCGTTTTCAAATTTTAAAAGTGCATGTTTCATAGCAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGAAGGGCATTTTTAATTCCATGTTTGTTTGATTTTTTTTTTCATTTTTTGGCCATTTGGGACAGTATTTGGAGAAATTTTCTTATCCAAAGGCGGTTCTCTAAAGAAAACCCCTCTAATTTTATTTGGGTCCTCTACACTGGAATAGAGCCAAAAATTATTAGTAACAGATGTCCATTTGTCAACAAAGAACACAGAAATCAAATAATAGTATGGTCAGCTATTTGGGTCACTTTCAATTGTAACTGGTTATCTGACTTTTTGAACTCTATTCTTATCACAATCGAATGAATAAAACATAATCAGAAATCATAAAAATGACAAATGAATACCAAAAGTCATAAATATTACATTTATTTTATTTCTCTTTGAACAAGAACACAACATAGATCAAAAACATTTCAAAGTGCCTTCTTCCACTTTTTCAACTCTTCGTAAATTTTTTGAGATCTTGGTTTCAAATGAAAATAAACTGCCAATCTATCCCGAGCTTGAACATCTAAATCCACCCCGTTTTCAAATTTTAAAAGTGCATGTTTCATAGCAGAGAGTGCCCAGAATAAATGAGTGAGAGGCCAGAAGAAGAGACACTCCTGGATTAGAGACTCCAGTTCAGAGGATCGATCAGAGGGAATATGATTTTTGAGCTGAAAAATAGAATCATTAGGTATTTGCTAGTTTCTATTTGAACCGTATTATCAGCATCTAGATAAGCTTCGCATAGAATACGAATGATGGGAGAGTTATCAGTCAGATCTTCAATGATTTTTATTCCAGGTGGAAATGGAACATTGAATGTGATTGCCGATTCAGATACAAACATTGCAAGATCAAACCCTCTCCAATTGTATGATGAGAACTCGCAATCAATGAAAACCATTTCTTTTGTAGAATTCAGCTCCAGAACATTTGACACCTGAAAACAACATTAATGTCTTTTATGGCATGGAAACTCACCCCAAAATCAATTTGTCCAAAAACCAAAGTGTGCTCGAAAAC</canonical>
            <polymorphic>AAGAAGGGCATTTTTAATTCCATGTTTGTTTGATTTTTTTTTTCATTTTTTGGCCATTTGGGACAGTATTTGGAGAAATTTTCTTATCCAAAGGCGGTTCTCTAAAGAAAACCCCTCTAATTTTATTTGGGTCCTCTACACTGGAATAGAGCCAAAAATTATTAGTAACAGATGTCCATTTGTCAACAAAGAACACAGAAATCAAATAATAGTATGGTCAGCTATTTGGGTCACTTTCAATTGTAACTGGTTATCTGACTTTTTGAACTCTATTCTTATCACAATCGAATGAATAAAACATAATCAGAAATCATAAAAATGACAAATGAATACCAAAAGTCATAAATATTACATTTATTTTATTTCTCTTTGAACAAGAACACAACATAGATCAAAAACATTTCAAAGTGCCTTCTTCCACTTTTTCAACTCTTCGTAAATTTTTTGAGATCTTGGTTTCAAATGAAAATAAACTGCCAATCTATCCCGAGCTTGAACAYCTAAATCCACCCCGTTTTCAAATTTTAAAAGTGCATGTTTCATAGCAGAGAGTGCCCAGAATAAATGAGTGAGAGGCCAGAAGAAGAGACACTCCTGGATTAGAGACTCCAGTTCAGAGGATCGATCAGAGGGAATATGATTTTTGAGCTGAAAAATAGAATCATTAGGTATTTGCTAGTTTCTATTTGAACCGTATTATCAGCATCTAGATAAGCTTCGCATAGAATACGAATGATGGGAGAGTTATCAGTCAGATCTTCAATGATTTTTATTCCAGGTGGAAATGGAACATTGAATGTGATTGCCGATTCAGATACAAACATTGCAAGATCAAACCCTCTCCAATTGTATGATGAGAACTCGCAATCAATGAAAACCATTTCTTTTGTAGAATTCAGCTCCAGAACATTTGACACCTGAAAACAACATTAATGTCTTTTATGGCATGGAAACTCACCCCAAAATCAATTTGTCCAAAAACCAAAGTGTGCTCGAAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCTCTTTGAACAAGAACACA</pcr_primer_p1>
		<pcr_primer_p2>GAGTCTCTAATCCAGGAGTGTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ATTTCTCTTTGAACAAGAACACAACATAGATCAAAAACATTTCAAAGTGCCTTCTTCCACTTTTTCAACTCTTCGTAAATTTTTTGAGATCTTGGTTTCAAATGAAAATAAACTGCCAATCTATCCCGAGCTTGAACATCTAAATCCACCCCGTTTTCAAATTTTAAAAGTGCATGTTTCATAGCAGAGAGTGCCCAGAATAAATGAGTGAGAGGCCAGAAGAAGAGACACTCCTGGATTAGAGACTC</canonical_amplicon>
		<polymorphic_amplicon>ATTTCTCTTTGAACAAGAACACAACATAGATCAAAAACATTTCAAAGTGCCTTCTTCCACTTTTTCAACTCTTCGTAAATTTTTTGAGATCTTGGTTTCAAATGAAAATAAACTGCCAATCTATCCCGAGCTTGAACAYCTAAATCCACCCCGTTTTCAAATTTTAAAAGTGCATGTTTCATAGCAGAGAGTGCCCAGAATAAATGAGTGAGAGGCCAGAAGAAGAGACACTCCTGGATTAGAGACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39021</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>518494</contig_pos>
        <strand>+</strand>
        <context>CAAAAAAGGG[A/G]TTGTTGGATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGCCGTTGATTTAGTTTTCTAATTTTACTTTTACAGTACAAAAAAGGG</left_flank>
        <right_flank>TTGTTGGATACAGAACAGAATTAGAACTAGATGATTATGTGGTTGGATTG</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGCCGATTTATTATGTTGGAAACGATCTTTTATATCCATTCGCCAAAAATGTATACGGTAAGAAAAAAAATCCGATAGTTCTCTGGATTAAATTCGAACTACAGCAAAAGGAGAACTTGTTCAATTTCATGCCATTGAAATTTTCTTCTCGGCGCTTCCTTCTTATTCAATCCCCGGAGTTAGTTATACTGTTCTCTTCTTTGCATATGCTCTATTATTTGGAACCATCAATTTCGCCTTTGTTGCTTATCAGGTACGACTTAGTATTCTCCTTTTTTGCCTTTGATGAAGTTTCTAGGTCATCACATTTGAAATTCTCATCAATTTCTTGCATCATTTGTTCCCACGTCTTCTTTACTTGAAGCAAAAAGCAGTGAAAATTTGTGTGATTATGGCTACAGTTACCTTCCTTCTCGCTCTTTACATTTCTGGATTACCAGTTAGTATTTTGCCGTTGATTTAGTTTTCTAATTTTACTTTTACAGTACAAAAAAGGGATTGTTGGATACAGAACAGAATTAGAACTAGATGATTATGTGGTTGGATTGGTTTCAACTTCAGTTTTCATTCAATTGGTTTCTGTTTCAATTGTTTATGGACACAAACGACTCATTGTTAATGTTTTGGTAACTGTATACTTTCATCTACGAACTGATTTTTTAAACAAAAATTTCAGACAATGCTGAAAAGTCATCCAAAAACCTATAGGTTTGTTGAAAGAAACCGAGTAGTTTTGTACCTAATGTGGACCGTCCTATTGCCTATTTCTTGTTTGGTAAGTTGATAATTCTGATCTCTCAAAAACCATACACTTTTAGCTCTCAATCATGTCAATTATTGTCAAAAAGTATCAGTACTATCATTGGCCAGTGGTTCTCTACGCAGCCATCAGTGCTTTTCCGCTCATTTATATGATTAGACAGGTGATTTTTTATCAGAATTCCTAAACTAATAGAAAATTTAGATCGTAATCTACCGTATACGGAATCAAGACTTCA</canonical>
            <polymorphic>TTTGCCGATTTATTATGTTGGAAACGATCTTTTATATCCATTCGCCAAAAATGTATACGGTAAGAAAAAAAATCCGATAGTTCTCTGGATTAAATTCGAACTACAGCAAAAGGAGAACTTGTTCAATTTCATGCCATTGAAATTTTCTTCTCGGCGCTTCCTTCTTATTCAATCCCCGGAGTTAGTTATACTGTTCTCTTCTTTGCATATGCTCTATTATTTGGAACCATCAATTTCGCCTTTGTTGCTTATCAGGTACGACTTAGTATTCTCCTTTTTTGCCTTTGATGAAGTTTCTAGGTCATCACATTTGAAATTCTCATCAATTTCTTGCATCATTTGTTCCCACGTCTTCTTTACTTGAAGCAAAAAGCAGTGAAAATTTGTGTGATTATGGCTACAGTTACCTTCCTTCTCGCTCTTTACATTTCTGGATTACCAGTTAGTATTTTGCCGTTGATTTAGTTTTCTAATTTTACTTTTACAGTACAAAAAAGGGRTTGTTGGATACAGAACAGAATTAGAACTAGATGATTATGTGGTTGGATTGGTTTCAACTTCAGTTTTCATTCAATTGGTTTCTGTTTCAATTGTTTATGGACACAAACGACTCATTGTTAATGTTTTGGTAACTGTATACTTTCATCTACGAACTGATTTTTTAAACAAAAATTTCAGACAATGCTGAAAAGTCATCCAAAAACCTATAGGTTTGTTGAAAGAAACCGAGTAGTTTTGTACCTAATGTGGACCGTCCTATTGCCTATTTCTTGTTTGGTAAGTTGATAATTCTGATCTCTCAAAAACCATACACTTTTAGCTCTCAATCATGTCAATTATTGTCAAAAAGTATCAGTACTATCATTGGCCAGTGGTTCTCTACGCAGCCATCAGTGCTTTTCCGCTCATTTATATGATTAGACAGGTGATTTTTTATCAGAATTCCTAAACTAATAGAAAATTTAGATCGTAATCTACCGTATACGGAATCAAGACTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTGAAAATTTGTGTGATTATG</pcr_primer_p1>
		<pcr_primer_p2>ATTAACAATGAGTCGTTTGTGTC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CAGTGAAAATTTGTGTGATTATGGCTACAGTTACCTTCCTTCTCGCTCTTTACATTTCTGGATTACCAGTTAGTATTTTGCCGTTGATTTAGTTTTCTAATTTTACTTTTACAGTACAAAAAAGGGATTGTTGGATACAGAACAGAATTAGAACTAGATGATTATGTGGTTGGATTGGTTTCAACTTCAGTTTTCATTCAATTGGTTTCTGTTTCAATTGTTTATGGACACAAACGACTCATTGTTAAT</canonical_amplicon>
		<polymorphic_amplicon>CAGTGAAAATTTGTGTGATTATGGCTACAGTTACCTTCCTTCTCGCTCTTTACATTTCTGGATTACCAGTTAGTATTTTGCCGTTGATTTAGTTTTCTAATTTTACTTTTACAGTACAAAAAAGGGRTTGTTGGATACAGAACAGAATTAGAACTAGATGATTATGTGGTTGGATTGGTTTCAACTTCAGTTTTCATTCAATTGGTTTCTGTTTCAATTGTTTATGGACACAAACGACTCATTGTTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39022</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>518933</contig_pos>
        <strand>+</strand>
        <context>ATTTTTTATC[A/G]GAATTCCTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CATCAGTGCTTTTCCGCTCATTTATATGATTAGACAGGTGATTTTTTATC</left_flank>
        <right_flank>GAATTCCTAAACTAATAGAAAATTTAGATCGTAATCTACCGTATACGGAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTTAGTATTTTGCCGTTGATTTAGTTTTCTAATTTTACTTTTACAGTACAAAAAAGGGATTGTTGGATACAGAACAGAATTAGAACTAGATGATTATGTGGTTGGATTGGTTTCAACTTCAGTTTTCATTCAATTGGTTTCTGTTTCAATTGTTTATGGACACAAACGACTCATTGTTAATGTTTTGGTAACTGTATACTTTCATCTACGAACTGATTTTTTAAACAAAAATTTCAGACAATGCTGAAAAGTCATCCAAAAACCTATAGGTTTGTTGAAAGAAACCGAGTAGTTTTGTACCTAATGTGGACCGTCCTATTGCCTATTTCTTGTTTGGTAAGTTGATAATTCTGATCTCTCAAAAACCATACACTTTTAGCTCTCAATCATGTCAATTATTGTCAAAAAGTATCAGTACTATCATTGGCCAGTGGTTCTCTACGCAGCCATCAGTGCTTTTCCGCTCATTTATATGATTAGACAGGTGATTTTTTATCAGAATTCCTAAACTAATAGAAAATTTAGATCGTAATCTACCGTATACGGAATCAAGACTTCAGTGCGTTATCACAAACGCATCGTTGGCAGCCGGCAAATGAAGGACATGCGAGAGAGATTGACCACGATGAGAGAGCGTCAGGAGTTTTGAGTTGAACTTGGTTTAGGATTCAGGGATTATAAATATTACGAATGTTTTTGTTCTGACTAACAAAAGAATGTTGGAAGTTGTCATTCGGAAGCTAAGAGTCTGACATTTTCAAAAATATTTTTTATTTTCGTTCCGGTTATACCAGGTTTGAAAAATTTGATCTTCAAATTTGACTTAAATTTGAATATTTTGAGTGCCGGATCAGGTGAACACCACCTAGTAGCCGCCTTGGCAATGCGGGCGGGTCGTTGACGGCTTGTCGACATACCGTCTTTTCGCTGTGAATGAAGTCACAGTTTTAAAACGAAAATCTGCTAGACATGAATCTGCTAACCACGAAGGAAAATTC</canonical>
            <polymorphic>CAGTTAGTATTTTGCCGTTGATTTAGTTTTCTAATTTTACTTTTACAGTACAAAAAAGGGATTGTTGGATACAGAACAGAATTAGAACTAGATGATTATGTGGTTGGATTGGTTTCAACTTCAGTTTTCATTCAATTGGTTTCTGTTTCAATTGTTTATGGACACAAACGACTCATTGTTAATGTTTTGGTAACTGTATACTTTCATCTACGAACTGATTTTTTAAACAAAAATTTCAGACAATGCTGAAAAGTCATCCAAAAACCTATAGGTTTGTTGAAAGAAACCGAGTAGTTTTGTACCTAATGTGGACCGTCCTATTGCCTATTTCTTGTTTGGTAAGTTGATAATTCTGATCTCTCAAAAACCATACACTTTTAGCTCTCAATCATGTCAATTATTGTCAAAAAGTATCAGTACTATCATTGGCCAGTGGTTCTCTACGCAGCCATCAGTGCTTTTCCGCTCATTTATATGATTAGACAGGTGATTTTTTATCRGAATTCCTAAACTAATAGAAAATTTAGATCGTAATCTACCGTATACGGAATCAAGACTTCAGTGCGTTATCACAAACGCATCGTTGGCAGCCGGCAAATGAAGGACATGCGAGAGAGATTGACCACGATGAGAGAGCGTCAGGAGTTTTGAGTTGAACTTGGTTTAGGATTCAGGGATTATAAATATTACGAATGTTTTTGTTCTGACTAACAAAAGAATGTTGGAAGTTGTCATTCGGAAGCTAAGAGTCTGACATTTTCAAAAATATTTTTTATTTTCGTTCCGGTTATACCAGGTTTGAAAAATTTGATCTTCAAATTTGACTTAAATTTGAATATTTTGAGTGCCGGATCAGGTGAACACCACCTAGTAGCCGCCTTGGCAATGCGGGCGGGTCGTTGACGGCTTGTCGACATACCGTCTTTTCGCTGTGAATGAAGTCACAGTTTTAAAACGAAAATCTGCTAGACATGAATCTGCTAACCACGAAGGAAAATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCCTATTGCCTATTTCTTGTTT</pcr_primer_p1>
		<pcr_primer_p2>CACTGAAGTCTTGATTCCGTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTCCTATTGCCTATTTCTTGTTTGGTAAGTTGATAATTCTGATCTCTCAAAAACCATACACTTTTAGCTCTCAATCATGTCAATTATTGTCAAAAAGTATCAGTACTATCATTGGCCAGTGGTTCTCTACGCAGCCATCAGTGCTTTTCCGCTCATTTATATGATTAGACAGGTGATTTTTTATCAGAATTCCTAAACTAATAGAAAATTTAGATCGTAATCTACCGTATACGGAATCAAGACTTCAGTG</canonical_amplicon>
		<polymorphic_amplicon>GTCCTATTGCCTATTTCTTGTTTGGTAAGTTGATAATTCTGATCTCTCAAAAACCATACACTTTTAGCTCTCAATCATGTCAATTATTGTCAAAAAGTATCAGTACTATCATTGGCCAGTGGTTCTCTACGCAGCCATCAGTGCTTTTCCGCTCATTTATATGATTAGACAGGTGATTTTTTATCRGAATTCCTAAACTAATAGAAAATTTAGATCGTAATCTACCGTATACGGAATCAAGACTTCAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39023</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>563838</contig_pos>
        <strand>+</strand>
        <context>GATCGTAGCT[A/G]CCACACCAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCGGTGTAGGTCCGCTGATCGCCGCCAAATCGCGGACCTAGATCGTAGCT</left_flank>
        <right_flank>CCACACCAGGAGTTGCTGGTTCTAGAAGCCGCTTAGACGCCGGATTGCCG</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCTCCGGATGAGCTTGGCCTTCTGAAATTTTGCAAAAATTATTTGAAAAGCGTATTTAATGGTACTAACCGGGTTTGACTTAATCCAAGCGTCATTGAAATTTAGGTGGAGCGTCCGTAAGAAGGGTCTGAAAACTTTATTATTTGGAAGAAAATCAAATGAATAAAAGTTTACCTCTATATTTCTACTTCTCATCCAACAAAAATCGAAATTTCCGTAGATTTCTGTCAGTCTTTCTATTAAATCTGAAAATATAATATTTTTACTGCAAAATGACTGTAGCACTTACTCATCTGCTTCACAGTAGGCATCGGCAGCTCCATTTCATCAAGGATTTTATAGAGTTGAATAATAGTTGTAAAAACCGAATAAAAAATAGGCCAGAAATAAATAAAAAATAATTAATGCGCCAGGAAGGACGAGTGGTGTCAACCAGATCCTTGCGCTCGCGGTGTAGGTCCGCTGATCGCCGCCAAATCGCGGACCTAGATCGTAGCTACCACACCAGGAGTTGCTGGTTCTAGAAGCCGCTTAGACGCCGGATTGCCGAGTTGGCTATTAGCCGTATTTCACAGCTATTAGCCAAAAACATGGGCTAACAGCCGAATTCCTTGGCTAATAGCCACGAAGGTGCCGGGAACGCGCCACTCGACGCCAAAAATTCCCTGAGTGGGTAACTCTGGTTACCGAAGGACCCCCAACGACTACTACCGTAACCTGAAAACACTTTCATTTTGCGGATTCTATTTTCTCGAATTTCGTGCTTTTTCAGTCAATATTTTTTGTTCTCAAACGCTTTTATTTTTTACTTGTTTGGGGAAAATAACAGAAATATCGGCGAAAATCAGTAAATCAGTAAACGGCGCATCCGATTTGTTGGTTGTTACAGTAGACCTGGAAAAGGGCATGTTTTAAAGACATGGAGAGTGTAGAGAGGTGAAAATTATTTTTAATTTTTGAGACAAATTTGGCTTAAAACGGATGAAAAATGAATCAAAA</canonical>
            <polymorphic>CTCTCCGGATGAGCTTGGCCTTCTGAAATTTTGCAAAAATTATTTGAAAAGCGTATTTAATGGTACTAACCGGGTTTGACTTAATCCAAGCGTCATTGAAATTTAGGTGGAGCGTCCGTAAGAAGGGTCTGAAAACTTTATTATTTGGAAGAAAATCAAATGAATAAAAGTTTACCTCTATATTTCTACTTCTCATCCAACAAAAATCGAAATTTCCGTAGATTTCTGTCAGTCTTTCTATTAAATCTGAAAATATAATATTTTTACTGCAAAATGACTGTAGCACTTACTCATCTGCTTCACAGTAGGCATCGGCAGCTCCATTTCATCAAGGATTTTATAGAGTTGAATAATAGTTGTAAAAACCGAATAAAAAATAGGCCAGAAATAAATAAAAAATAATTAATGCGCCAGGAAGGACGAGTGGTGTCAACCAGATCCTTGCGCTCGCGGTGTAGGTCCGCTGATCGCCGCCAAATCGCGGACCTAGATCGTAGCTRCCACACCAGGAGTTGCTGGTTCTAGAAGCCGCTTAGACGCCGGATTGCCGAGTTGGCTATTAGCCGTATTTCACAGCTATTAGCCAAAAACATGGGCTAACAGCCGAATTCCTTGGCTAATAGCCACGAAGGTGCCGGGAACGCGCCACTCGACGCCAAAAATTCCCTGAGTGGGTAACTCTGGTTACCGAAGGACCCCCAACGACTACTACCGTAACCTGAAAACACTTTCATTTTGCGGATTCTATTTTCTCGAATTTCGTGCTTTTTCAGTCAATATTTTTTGTTCTCAAACGCTTTTATTTTTTACTTGTTTGGGGAAAATAACAGAAATATCGGCGAAAATCAGTAAATCAGTAAACGGCGCATCCGATTTGTTGGTTGTTACAGTAGACCTGGAAAAGGGCATGTTTTAAAGACATGGAGAGTGTAGAGAGGTGAAAATTATTTTTAATTTTTGAGACAAATTTGGCTTAAAACGGATGAAAAATGAATCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCAAGGATTTTATAGAGTTGAA</pcr_primer_p1>
		<pcr_primer_p2>ATAGCTGTGAAATACGGCTAATA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CATCAAGGATTTTATAGAGTTGAATAATAGTTGTAAAAACCGAATAAAAAATAGGCCAGAAATAAATAAAAAATAATTAATGCGCCAGGAAGGACGAGTGGTGTCAACCAGATCCTTGCGCTCGCGGTGTAGGTCCGCTGATCGCCGCCAAATCGCGGACCTAGATCGTAGCTACCACACCAGGAGTTGCTGGTTCTAGAAGCCGCTTAGACGCCGGATTGCCGAGTTGGCTATTAGCCGTATTTCACAGCTAT</canonical_amplicon>
		<polymorphic_amplicon>CATCAAGGATTTTATAGAGTTGAATAATAGTTGTAAAAACCGAATAAAAAATAGGCCAGAAATAAATAAAAAATAATTAATGCGCCAGGAAGGACGAGTGGTGTCAACCAGATCCTTGCGCTCGCGGTGTAGGTCCGCTGATCGCCGCCAAATCGCGGACCTAGATCGTAGCTRCCACACCAGGAGTTGCTGGTTCTAGAAGCCGCTTAGACGCCGGATTGCCGAGTTGGCTATTAGCCGTATTTCACAGCTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39024</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>564112</contig_pos>
        <strand></strand>
        <context>gctttttcag[T/G]caatattttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AACACTTTCATTTTGCGGATTCTATTTTCTCGAATTTCGTGCTTTTTCAG</left_flank>
        <right_flank>CAATATTTTTTGTTCTCAAACGCTTTTATTTTTTACTTGTTTGGGGAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGACTGTAGCACTTACTCATCTGCTTCACAGTAGGCATCGGCAGCTCCATTTCATCAAGGATTTTATAGAGTTGAATAATAGTTGTAAAAACCGAATAAAAAATAGGCCAGAAATAAATAAAAAATAATTAATGCGCCAGGAAGGACGAGTGGTGTCAACCAGATCCTTGCGCTCGCGGTGTAGGTCCGCTGATCGCCGCCAAATCGCGGACCTAGATCGTAGCTACCACACCAGGAGTTGCTGGTTCTAGAAGCCGCTTAGACGCCGGATTGCCGAGTTGGCTATTAGCCGTATTTCACAGCTATTAGCCAAAAACATGGGCTAACAGCCGAATTCCTTGGCTAATAGCCACGAAGGTGCCGGGAACGCGCCACTCGACGCCAAAAATTCCCTGAGTGGGTAACTCTGGTTACCGAAGGACCCCCAACGACTACTACCGTAACCTGAAAACACTTTCATTTTGCGGATTCTATTTTCTCGAATTTCGTGCTTTTTCAGTCAATATTTTTTGTTCTCAAACGCTTTTATTTTTTACTTGTTTGGGGAAAATAACAGAAATATCGGCGAAAATCAGTAAATCAGTAAACGGCGCATCCGATTTGTTGGTTGTTACAGTAGACCTGGAAAAGGGCATGTTTTAAAGACATGGAGAGTGTAGAGAGGTGAAAATTATTTTTAATTTTTGAGACAAATTTGGCTTAAAACGGATGAAAAATGAATCAAAACCAGGCTAAAAATAGCTTAATAGAAAGCCAAAAATATCTCGAAATCAAAGAAAACGGACCAAAGTCAGATCCTGCCACAATTTCCTTTAGGCTCAATATTTTTTGGCCAACTATGATAGAAAAGCTCAAGAACTCCAAATTGATACTATGGCAGGGGCCTTCTTTGGTCTACTTTTCAGTCATTTTAGTCAGCTTTTGTACCGTTTTAGGCCAATTTTGACTCACTTTACGCTAGTTTTTGATCCATTTTTGGTCCGTTTTTGAACCACTTTTG</canonical>
            <polymorphic>TGACTGTAGCACTTACTCATCTGCTTCACAGTAGGCATCGGCAGCTCCATTTCATCAAGGATTTTATAGAGTTGAATAATAGTTGTAAAAACCGAATAAAAAATAGGCCAGAAATAAATAAAAAATAATTAATGCGCCAGGAAGGACGAGTGGTGTCAACCAGATCCTTGCGCTCGCGGTGTAGGTCCGCTGATCGCCGCCAAATCGCGGACCTAGATCGTAGCTACCACACCAGGAGTTGCTGGTTCTAGAAGCCGCTTAGACGCCGGATTGCCGAGTTGGCTATTAGCCGTATTTCACAGCTATTAGCCAAAAACATGGGCTAACAGCCGAATTCCTTGGCTAATAGCCACGAAGGTGCCGGGAACGCGCCACTCGACGCCAAAAATTCCCTGAGTGGGTAACTCTGGTTACCGAAGGACCCCCAACGACTACTACCGTAACCTGAAAACACTTTCATTTTGCGGATTCTATTTTCTCGAATTTCGTGCTTTTTCAGKCAATATTTTTTGTTCTCAAACGCTTTTATTTTTTACTTGTTTGGGGAAAATAACAGAAATATCGGCGAAAATCAGTAAATCAGTAAACGGCGCATCCGATTTGTTGGTTGTTACAGTAGACCTGGAAAAGGGCATGTTTTAAAGACATGGAGAGTGTAGAGAGGTGAAAATTATTTTTAATTTTTGAGACAAATTTGGCTTAAAACGGATGAAAAATGAATCAAAACCAGGCTAAAAATAGCTTAATAGAAAGCCAAAAATATCTCGAAATCAAAGAAAACGGACCAAAGTCAGATCCTGCCACAATTTCCTTTAGGCTCAATATTTTTTGGCCAACTATGATAGAAAAGCTCAAGAACTCCAAATTGATACTATGGCAGGGGCCTTCTTTGGTCTACTTTTCAGTCATTTTAGTCAGCTTTTGTACCGTTTTAGGCCAATTTTGACTCACTTTACGCTAGTTTTTGATCCATTTTTGGTCCGTTTTTGAACCACTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAGCTATTAGCCAAAAACAT</pcr_primer_p1>
		<pcr_primer_p2>CGCCGTTTACTGATTTACTG</pcr_primer_p2>
		<pcr_amplicon_size>295</pcr_amplicon_size>
		<canonical_amplicon>CACAGCTATTAGCCAAAAACATGGGCTAACAGCCGAATTCCTTGGCTAATAGCCACGAAGGTGCCGGGAACGCGCCACTCGACGCCAAAAATTCCCTGAGTGGGTAACTCTGGTTACCGAAGGACCCCCAACGACTACTACCGTAACCTGAAAACACTTTCATTTTGCGGATTCTATTTTCTCGAATTTCGTGCTTTTTCAGTCAATATTTTTTGTTCTCAAACGCTTTTATTTTTTACTTGTTTGGGGAAAATAACAGAAATATCGGCGAAAATCAGTAAATCAGTAAACGGCG</canonical_amplicon>
		<polymorphic_amplicon>CACAGCTATTAGCCAAAAACATGGGCTAACAGCCGAATTCCTTGGCTAATAGCCACGAAGGTGCCGGGAACGCGCCACTCGACGCCAAAAATTCCCTGAGTGGGTAACTCTGGTTACCGAAGGACCCCCAACGACTACTACCGTAACCTGAAAACACTTTCATTTTGCGGATTCTATTTTCTCGAATTTCGTGCTTTTTCAGKCAATATTTTTTGTTCTCAAACGCTTTTATTTTTTACTTGTTTGGGGAAAATAACAGAAATATCGGCGAAAATCAGTAAATCAGTAAACGGCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39025</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>590860</contig_pos>
        <strand></strand>
        <context>accgttgtcg[G/C]aacgctgggg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GTATTTCGGGAATAGGGTTTCCAGATTAAGCCTGGTTGGGACCGTTGTCG</left_flank>
        <right_flank>AACGCTGGGGCCGTTCTCGGGACATAGGGACCGCTGTCAAAACAATGGGA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACGGTCCTAACGTTCCGACAACGGTCCTAACGTTCCGACAACGGTCCCAAGGGTACGACAACGGTCCCAACCAGGCTTAATCTGGAAACCCTATTCAAAACATCGGAAATTGTAATTTTCGTTTCAACAAAGAAACATATTTCAGCAACAAAAACGAACATTTTGCCGATAATTGAGAATTCCAGCACTTTTTTACTGGAATTTTTTCAGAGTGTATTTTGTTTATAATTATAGGCTTAGGCTAAAACGCCTTGTTCACATCAGTGCCGGAAAAAGGCGTTTTGGCTTAAGTCTAAAATACAAAAAACGTATCATTTTGTGAAAAATTCCTGTCAAAAAGGTCCTGAAATTCGCAAGTATAAGTAAAATCTATAAGTAAAATGTATAAGTAAAGTATAAGTAAAACTTTTCCACTGGATTTTTAAAAGACCATTCCGTTTTTTTTTCTGTATTTCGGGAATAGGGTTTCCAGATTAAGCCTGGTTGGGACCGTTGTCGGAACGCTGGGGCCGTTCTCGGGACATAGGGACCGCTGTCAAAACAATGGGACCGTTGTCGCAATTCTTGGGACCGTTCTTCCCGGAAAGAGTCAAATTTTATTACTTCCTTTAAATTCGGAGAAGATGTTTGAAAGTATTTATTTTCAGTAGGTCGAAATAAAAAAGGTAAAAAACCAGGCACACATCCACAGTGTTTGATCCAGCGACGTATGCTGTTGCTCTTAAATGAGAAGGTTCTCAAGTTCGCTGGGGCGCTGTTTCTGACCAAGCCTTTTGAACCGATATACTTTGATAAATAGTCCAAAAACTCCGAATTCTTTGCATCCTCACACTCCCAGCTGCAGACAAAAAATGATCCATGCCCTTTCTCCCTTCTCTTCCCCAATAAATGACACTTCCTCACCAGAAAAAAGAAGCGAGAAAGATAGAAAAAACCCGGGCAAGTTCCGGTCCATCCGATGAAAAATGTGCTCTTTGGGCTGAAATATGATTCGAGTGA</canonical>
            <polymorphic>AACGGTCCTAACGTTCCGACAACGGTCCTAACGTTCCGACAACGGTCCCAAGGGTACGACAACGGTCCCAACCAGGCTTAATCTGGAAACCCTATTCAAAACATCGGAAATTGTAATTTTCGTTTCAACAAAGAAACATATTTCAGCAACAAAAACGAACATTTTGCCGATAATTGAGAATTCCAGCACTTTTTTACTGGAATTTTTTCAGAGTGTATTTTGTTTATAATTATAGGCTTAGGCTAAAACGCCTTGTTCACATCAGTGCCGGAAAAAGGCGTTTTGGCTTAAGTCTAAAATACAAAAAACGTATCATTTTGTGAAAAATTCCTGTCAAAAAGGTCCTGAAATTCGCAAGTATAAGTAAAATCTATAAGTAAAATGTATAAGTAAAGTATAAGTAAAACTTTTCCACTGGATTTTTAAAAGACCATTCCGTTTTTTTTTCTGTATTTCGGGAATAGGGTTTCCAGATTAAGCCTGGTTGGGACCGTTGTCGSAACGCTGGGGCCGTTCTCGGGACATAGGGACCGCTGTCAAAACAATGGGACCGTTGTCGCAATTCTTGGGACCGTTCTTCCCGGAAAGAGTCAAATTTTATTACTTCCTTTAAATTCGGAGAAGATGTTTGAAAGTATTTATTTTCAGTAGGTCGAAATAAAAAAGGTAAAAAACCAGGCACACATCCACAGTGTTTGATCCAGCGACGTATGCTGTTGCTCTTAAATGAGAAGGTTCTCAAGTTCGCTGGGGCGCTGTTTCTGACCAAGCCTTTTGAACCGATATACTTTGATAAATAGTCCAAAAACTCCGAATTCTTTGCATCCTCACACTCCCAGCTGCAGACAAAAAATGATCCATGCCCTTTCTCCCTTCTCTTCCCCAATAAATGACACTTCCTCACCAGAAAAAAGAAGCGAGAAAGATAGAAAAAACCCGGGCAAGTTCCGGTCCATCCGATGAAAAATGTGCTCTTTGGGCTGAAATATGATTCGAGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>289 146 145 119 104 69 49 42 20 17</canonical_bands>
                <polymorphic_bands>408 146 145 104 69 49 42 20 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTTAAGTTTAACCGGCTGTA</pcr_primer_p1>
		<pcr_primer_p2>CCGAATTTAAAGGAAGTAATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>735</pcr_amplicon_size>
		<canonical_amplicon>GGAACGCTGGGGCCGTTCTCGGGACATAGGGACCGCTGTCAAAACAATGGGACCGTTGTCGCAATTCTTGGGACCGTTCTTCCCGGAAAGAGTCAAATTTTATTACTTCCTTTAAATTCGG</canonical_amplicon>
		<polymorphic_amplicon>GSAACGCTGGGGCCGTTCTCGGGACATAGGGACCGCTGTCAAAACAATGGGACCGTTGTCGCAATTCTTGGGACCGTTCTTCCCGGAAAGAGTCAAATTTTATTACTTCCTTTAAATTCGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39026</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>595077</contig_pos>
        <strand></strand>
        <context>AATCAAATAT[G/C]WACAGAAAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TATGGGCAAGCAAACTATCTCTTGCCAGACTGAAACTGGCAATCAAATAT</left_flank>
        <right_flank>AACAGAAAGCTGTAAGTTATTACCTTTTCCTATGAAAAAACTTGCCTTGT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGCTGCTCAACTCAACCAATTCGAAATTTTGCAAATGTTGATAAGGAAAGATGCCAAAATTGATCCTCCGCATAAGTGAGTATTGGTTCATAAATTTCGAGGAAATTTTTTTCTGTTTTTTTCAGCCATACCTGTATCTGTGAGACCTGTGATCGTGAGCGTCTGAATGATTCTCTACAGTACTCTCTTAAACGGATAAATACATATCGAGCACTTGCAAGTCCTGCCTATATGTCTCTTACCAGTTCGGATCCTATAAACGAAGCATTTAAACTTTCTTGGGCTCTCCAAAGATTGGCATTCGAGGAGCATGAATTCAAAGAGACATACCTTCAGCTCTCGGAGCAATGTAAACAATATTCCTGTGATCTGCTGAGCCAGTGTCGGAGTTCTGAAGAAGTGATTGCAATTTTAAATAAGGAGAATGATAACAATGATAATATCGATTTATGGGCAAGCAAACTATCTCTTGCCAGACTGAAACTGGCAATCAAATATGAACAGAAAGCTGTAAGTTATTACCTTTTCCTATGAAAAAACTTGCCTTGTAAAAATTTTCAGTTTGTTTCACACCCCCATTGCCAACAATTGCTCACATCAATTTGGTACGAAGGGATTCCATATCGTCAACAGAGTGGAACATGGGCCAGCTTCTTTCTCTACGCATTCTTATTAGCCTTCTGGCCCGTTTTCTGTCTTCTGTATATTTTAGTGAGTATATCTTTACTTCTAGGATCTCCCTGAAACAACTCATTCATTTCAGATGCCAAGAAGTCGTTTAGGAAAACTAGTCCGATCGCCCTTCATGAAATTTTTCTATTATTCAATTTCTTTTGCAACATTTCTGGGATTATTAACATGGGCAACGTTTGAAGATTATCGATATGAGAAAGGAGAAAGAGTGAGTTTCGGATGCCATTTGTTTCAATTCCTCTGTTGAATTTTCAGGGTGGTGTAACGCGAGCATCAGACAGAGGACCACCTGCAACATGGGTGGAA</canonical>
            <polymorphic>TGGCTGCTCAACTCAACCAATTCGAAATTTTGCAAATGTTGATAAGGAAAGATGCCAAAATTGATCCTCCGCATAAGTGAGTATTGGTTCATAAATTTCGAGGAAATTTTTTTCTGTTTTTTTCAGCCATACCTGTATCTGTGAGACCTGTGATCGTGAGCGTCTGAATGATTCTCTACAGTACTCTCTTAAACGGATAAATACATATCGAGCACTTGCAAGTCCTGCCTATATGTCTCTTACCAGTTCGGATCCTATAAACGAAGCATTTAAACTTTCTTGGGCTCTCCAAAGATTGGCATTCGAGGAGCATGAATTCAAAGAGACATACCTTCAGCTCTCGGAGCAATGTAAACAATATTCCTGTGATCTGCTGAGCCAGTGTCGGAGTTCTGAAGAAGTGATTGCAATTTTAAATAAGGAGAATGATAACAATGATAATATCGATTTATGGGCAAGCAAACTATCTCTTGCCAGACTGAAACTGGCAATCAAATATSAACAGAAAGCTGTAAGTTATTACCTTTTCCTATGAAAAAACTTGCCTTGTAAAAATTTTCAGTTTGTTTCACACCCCCATTGCCAACAATTGCTCACATCAATTTGGTACGAAGGGATTCCATATCGTCAACAGAGTGGAACATGGGCCAGCTTCTTTCTCTACGCATTCTTATTAGCCTTCTGGCCCGTTTTCTGTCTTCTGTATATTTTAGTGAGTATATCTTTACTTCTAGGATCTCCCTGAAACAACTCATTCATTTCAGATGCCAAGAAGTCGTTTAGGAAAACTAGTCCGATCGCCCTTCATGAAATTTTTCTATTATTCAATTTCTTTTGCAACATTTCTGGGATTATTAACATGGGCAACGTTTGAAGATTATCGATATGAGAAAGGAGAAAGAGTGAGTTTCGGATGCCATTTGTTTCAATTCCTCTGTTGAATTTTCAGGGTGGTGTAACGCGAGCATCAGACAGAGGACCACCTGCAACATGGGTGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCATGAATTCAAAGAGACATAC</pcr_primer_p1>
		<pcr_primer_p2>AAATTTTTACAAGGCAAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCATGAATTCAAAGAGACATACCTTCAGCTCTCGGAGCAATGTAAACAATATTCCTGTGATCTGCTGAGCCAGTGTCGGAGTTCTGAAGAAGTGATTGCAATTTTAAATAAGGAGAATGATAACAATGATAATATCGATTTATGGGCAAGCAAACTATCTCTTGCCAGACTGAAACTGGCAATCAAATATGAACAGAAAGCTGTAAGTTATTACCTTTTCCTATGAAAAAACTTGCCTTGTAAAAATTT</canonical_amplicon>
		<polymorphic_amplicon>AGCATGAATTCAAAGAGACATACCTTCAGCTCTCGGAGCAATGTAAACAATATTCCTGTGATCTGCTGAGCCAGTGTCGGAGTTCTGAAGAAGTGATTGCAATTTTAAATAAGGAGAATGATAACAATGATAATATCGATTTATGGGCAAGCAAACTATCTCTTGCCAGACTGAAACTGGCAATCAAATATSAACAGAAAGCTGTAAGTTATTACCTTTTCCTATGAAAAAACTTGCCTTGTAAAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39027</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>595078</contig_pos>
        <strand></strand>
        <context>ATCAAATATS[A/T]ACAGAAAGCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGGGCAAGCAAACTATCTCTTGCCAGACTGAAACTGGCAATCAAATATG</left_flank>
        <right_flank>ACAGAAAGCTGTAAGTTATTACCTTTTCCTATGAAAAAACTTGCCTTGTA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTGCTCAACTCAACCAATTCGAAATTTTGCAAATGTTGATAAGGAAAGATGCCAAAATTGATCCTCCGCATAAGTGAGTATTGGTTCATAAATTTCGAGGAAATTTTTTTCTGTTTTTTTCAGCCATACCTGTATCTGTGAGACCTGTGATCGTGAGCGTCTGAATGATTCTCTACAGTACTCTCTTAAACGGATAAATACATATCGAGCACTTGCAAGTCCTGCCTATATGTCTCTTACCAGTTCGGATCCTATAAACGAAGCATTTAAACTTTCTTGGGCTCTCCAAAGATTGGCATTCGAGGAGCATGAATTCAAAGAGACATACCTTCAGCTCTCGGAGCAATGTAAACAATATTCCTGTGATCTGCTGAGCCAGTGTCGGAGTTCTGAAGAAGTGATTGCAATTTTAAATAAGGAGAATGATAACAATGATAATATCGATTTATGGGCAAGCAAACTATCTCTTGCCAGACTGAAACTGGCAATCAAATATGAACAGAAAGCTGTAAGTTATTACCTTTTCCTATGAAAAAACTTGCCTTGTAAAAATTTTCAGTTTGTTTCACACCCCCATTGCCAACAATTGCTCACATCAATTTGGTACGAAGGGATTCCATATCGTCAACAGAGTGGAACATGGGCCAGCTTCTTTCTCTACGCATTCTTATTAGCCTTCTGGCCCGTTTTCTGTCTTCTGTATATTTTAGTGAGTATATCTTTACTTCTAGGATCTCCCTGAAACAACTCATTCATTTCAGATGCCAAGAAGTCGTTTAGGAAAACTAGTCCGATCGCCCTTCATGAAATTTTTCTATTATTCAATTTCTTTTGCAACATTTCTGGGATTATTAACATGGGCAACGTTTGAAGATTATCGATATGAGAAAGGAGAAAGAGTGAGTTTCGGATGCCATTTGTTTCAATTCCTCTGTTGAATTTTCAGGGTGGTGTAACGCGAGCATCAGACAGAGGACCACCTGCAACATGGGTGGAAT</canonical>
            <polymorphic>GGCTGCTCAACTCAACCAATTCGAAATTTTGCAAATGTTGATAAGGAAAGATGCCAAAATTGATCCTCCGCATAAGTGAGTATTGGTTCATAAATTTCGAGGAAATTTTTTTCTGTTTTTTTCAGCCATACCTGTATCTGTGAGACCTGTGATCGTGAGCGTCTGAATGATTCTCTACAGTACTCTCTTAAACGGATAAATACATATCGAGCACTTGCAAGTCCTGCCTATATGTCTCTTACCAGTTCGGATCCTATAAACGAAGCATTTAAACTTTCTTGGGCTCTCCAAAGATTGGCATTCGAGGAGCATGAATTCAAAGAGACATACCTTCAGCTCTCGGAGCAATGTAAACAATATTCCTGTGATCTGCTGAGCCAGTGTCGGAGTTCTGAAGAAGTGATTGCAATTTTAAATAAGGAGAATGATAACAATGATAATATCGATTTATGGGCAAGCAAACTATCTCTTGCCAGACTGAAACTGGCAATCAAATATGWACAGAAAGCTGTAAGTTATTACCTTTTCCTATGAAAAAACTTGCCTTGTAAAAATTTTCAGTTTGTTTCACACCCCCATTGCCAACAATTGCTCACATCAATTTGGTACGAAGGGATTCCATATCGTCAACAGAGTGGAACATGGGCCAGCTTCTTTCTCTACGCATTCTTATTAGCCTTCTGGCCCGTTTTCTGTCTTCTGTATATTTTAGTGAGTATATCTTTACTTCTAGGATCTCCCTGAAACAACTCATTCATTTCAGATGCCAAGAAGTCGTTTAGGAAAACTAGTCCGATCGCCCTTCATGAAATTTTTCTATTATTCAATTTCTTTTGCAACATTTCTGGGATTATTAACATGGGCAACGTTTGAAGATTATCGATATGAGAAAGGAGAAAGAGTGAGTTTCGGATGCCATTTGTTTCAATTCCTCTGTTGAATTTTCAGGGTGGTGTAACGCGAGCATCAGACAGAGGACCACCTGCAACATGGGTGGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCATGAATTCAAAGAGACATAC</pcr_primer_p1>
		<pcr_primer_p2>AAATTTTTACAAGGCAAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGCATGAATTCAAAGAGACATACCTTCAGCTCTCGGAGCAATGTAAACAATATTCCTGTGATCTGCTGAGCCAGTGTCGGAGTTCTGAAGAAGTGATTGCAATTTTAAATAAGGAGAATGATAACAATGATAATATCGATTTATGGGCAAGCAAACTATCTCTTGCCAGACTGAAACTGGCAATCAAATATGAACAGAAAGCTGTAAGTTATTACCTTTTCCTATGAAAAAACTTGCCTTGTAAAAATTT</canonical_amplicon>
		<polymorphic_amplicon>AGCATGAATTCAAAGAGACATACCTTCAGCTCTCGGAGCAATGTAAACAATATTCCTGTGATCTGCTGAGCCAGTGTCGGAGTTCTGAAGAAGTGATTGCAATTTTAAATAAGGAGAATGATAACAATGATAATATCGATTTATGGGCAAGCAAACTATCTCTTGCCAGACTGAAACTGGCAATCAAATATGWACAGAAAGCTGTAAGTTATTACCTTTTCCTATGAAAAAACTTGCCTTGTAAAAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39028</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>597960</contig_pos>
        <strand>+</strand>
        <context>TAAATGGAAC[A/T]TCTTTAGAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTGCACTTCGAAAAACAGATACATCAATGAGTTTTCCCATAAATGGAAC</left_flank>
        <right_flank>TCTTTAGAAGCATCGATTGTCAAACCACCCAGAGGAGTTTTAAGGTATTC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGACCATCAGTGGCAGAAGAATCAGAAGAAGAAGATAAATCAGATGAGACAAGTTCCAGCGATGAAGAGGCTGATGAGACGAGGTTTTTCCTAAAGTACTTTCCTTCTACTTCTACGCTTTTATTTTCAGTTTTCGATTCTAGTTTGTATTATAATTGTATCGCTGAGAATTTTAAGTCACTGATATGAGCTACCGTTTTTTCAGGTCGCGTAAATCATCAGTTCTGTATACTCCTCCTGTGAATTCAACGCTTCCGGGAATCATTAGCGAAGAGGCTCCAGTAAGAAAACATCCGAAGAGAAGAGCCAGTGAAGCCGATTCAAAACTACCTGATAGACCTTTATCTGAGACTTTCACATCTTCATTCGCGGTGAGAAATTTTAGTCCGAATTGTTTAAAGTATGAATTTCAGCCAAAACTGCTGCCAGTTTTCGCTCAACCACCTCATAGTGCACTTCGAAAAACAGATACATCAATGAGTTTTCCCATAAATGGAACTTCTTTAGAAGCATCGATTGTCAAACCACCCAGAGGAGTTTTAAGGTATTCCATGACCATTTGAAAAAAAAGTATCAAGAGGAAATTTCAGAGCATCACAAGAAAATCTGAATACAGTGGAGTTGATGGAAATGTTGAGGAAAGAAATGAACGAGAAGTTTGACCGACTGATCAGTGGAATGGTGGAAGTAAAGAGTCCTGCTTCCCAAAGTCATGTGGAGTTTAGTGTCGACAAATGATCTTCTTTCCTTTTTGATTATATTTATTCTGAACGGGTACTTTTCAAATATGATAGGAAAAATTCAATTTCAATTTTTTCAATATATAAATATTTAGCTCCCCAACAAAATTCAACTTTTGCAATTAAAATTAAAAACAAAGCGGATAGAAAAAAAATTGTTTCAAGCGATACTCTCTTCCAGAATCGTTGCTTTTTTTTGTGCTGTAATTTTAAGTCTCCGAGTTCTGGATGGCGGTTTTTTGATGAGAGATTCCATTTGG</canonical>
            <polymorphic>CGACCATCAGTGGCAGAAGAATCAGAAGAAGAAGATAAATCAGATGAGACAAGTTCCAGCGATGAAGAGGCTGATGAGACGAGGTTTTTCCTAAAGTACTTTCCTTCTACTTCTACGCTTTTATTTTCAGTTTTCGATTCTAGTTTGTATTATAATTGTATCGCTGAGAATTTTAAGTCACTGATATGAGCTACCGTTTTTTCAGGTCGCGTAAATCATCAGTTCTGTATACTCCTCCTGTGAATTCAACGCTTCCGGGAATCATTAGCGAAGAGGCTCCAGTAAGAAAACATCCGAAGAGAAGAGCCAGTGAAGCCGATTCAAAACTACCTGATAGACCTTTATCTGAGACTTTCACATCTTCATTCGCGGTGAGAAATTTTAGTCCGAATTGTTTAAAGTATGAATTTCAGCCAAAACTGCTGCCAGTTTTCGCTCAACCACCTCATAGTGCACTTCGAAAAACAGATACATCAATGAGTTTTCCCATAAATGGAACWTCTTTAGAAGCATCGATTGTCAAACCACCCAGAGGAGTTTTAAGGTATTCCATGACCATTTGAAAAAAAAGTATCAAGAGGAAATTTCAGAGCATCACAAGAAAATCTGAATACAGTGGAGTTGATGGAAATGTTGAGGAAAGAAATGAACGAGAAGTTTGACCGACTGATCAGTGGAATGGTGGAAGTAAAGAGTCCTGCTTCCCAAAGTCATGTGGAGTTTAGTGTCGACAAATGATCTTCTTTCCTTTTTGATTATATTTATTCTGAACGGGTACTTTTCAAATATGATAGGAAAAATTCAATTTCAATTTTTTCAATATATAAATATTTAGCTCCCCAACAAAATTCAACTTTTGCAATTAAAATTAAAAACAAAGCGGATAGAAAAAAAATTGTTTCAAGCGATACTCTCTTCCAGAATCGTTGCTTTTTTTTGTGCTGTAATTTTAAGTCTCCGAGTTCTGGATGGCGGTTTTTTGATGAGAGATTCCATTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAATTTTAGTCCGAATTGTTT</pcr_primer_p1>
		<pcr_primer_p2>CAACTCCACTGTATTCAGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGAAATTTTAGTCCGAATTGTTTAAAGTATGAATTTCAGCCAAAACTGCTGCCAGTTTTCGCTCAACCACCTCATAGTGCACTTCGAAAAACAGATACATCAATGAGTTTTCCCATAAATGGAACTTCTTTAGAAGCATCGATTGTCAAACCACCCAGAGGAGTTTTAAGGTATTCCATGACCATTTGAAAAAAAAGTATCAAGAGGAAATTTCAGAGCATCACAAGAAAATCTGAATACAGTGGAGTTG</canonical_amplicon>
		<polymorphic_amplicon>AGAAATTTTAGTCCGAATTGTTTAAAGTATGAATTTCAGCCAAAACTGCTGCCAGTTTTCGCTCAACCACCTCATAGTGCACTTCGAAAAACAGATACATCAATGAGTTTTCCCATAAATGGAACWTCTTTAGAAGCATCGATTGTCAAACCACCCAGAGGAGTTTTAAGGTATTCCATGACCATTTGAAAAAAAAGTATCAAGAGGAAATTTCAGAGCATCACAAGAAAATCTGAATACAGTGGAGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39029</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>608582</contig_pos>
        <strand>+</strand>
        <context>GGAATTACCG[A/G]CAAATTRAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGACGTTTTTGTATAATTTTGAGAAAATTTTATAAATTTCGGAATTACCG</left_flank>
        <right_flank>CAAATTAAAAAAAAACGAACAATTTATATTATTAAAATGTAGGGTTTCTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTACCGAAATTTAAAAAACAGGAACATTTGGTGTTTGGTTCTTTACTCCTCTGCCAGTTTAGAATGTTTTTTTCTCATTTCATTTTCTGTTTCTTTTTGGTTTAAAGTTATACCGGAAATTATTCTCTGCCGCTATTGTTCACTTCTGTCCCTCCAACTTTTTTTTCTCCTGACTCGCTATATAAAGTCCGAATTTCAGAAAAATCTATCAATTTTCTACTCGAAGAACAATGCCCGTGCTCGCTGGAATAAACTCGAAAGTGCTCAAAAATGGTTGGTTTTTTTAATTGACTAGTGGTCTCTCCGGAGTGCCCCTCTATTAGAGGGGCCGTTCAATTAGAGGGTGCCATTTTATTTTTCCGGTGTTTTTGAGAAATCTTATAGAAAAATTCGGAATATTTCCGTTAAATTTTATGGATATCTACCAATTCATTTTTTTGCGGAAATGACGTTTTTGTATAATTTTGAGAAAATTTTATAAATTTCGGAATTACCGACAAATTAAAAAAAAACGAACAATTTATATTATTAAAATGTAGGGTTTCTAGGTCACTGAAAATATATCAATTCCGAGTTCAATGTGAGCTTAAAATTCTTATTGTTTCAATTAAAAATTTTCTGAACCTGGTTGAGAACCAGAAAAGTTAACTTGCTCTTCTTAATTTTCACTCTACAGGTGACTCGGAGCCATCTCCACCACCAGCTGGAATCTACCGTATTTACAACATGCGATTCTGCCCATGGGCTCAACGTGCACTGATCTACGCTTCTGTAAAGAACGTTCCAAGTGAAGTGATCAATATTCATTTGAAAGAGAAACCAGACTGGTACTTCTCGAAGCATTACAAGGGACAAGTGCCAGCTTTGGAGCTTGACGAAGGAAAGAAACATGTGATCGAATCGGCTCACATTCCAGAGTATTTGGATGATTTGTTCCCAGAATCTCGTATTCTTCCATCTGATCCATATGAAAAGGTTCAACAAAAATTGTTGTTGG</canonical>
            <polymorphic>TGTTTACCGAAATTTAAAAAACAGGAACATTTGGTGTTTGGTTCTTTACTCCTCTGCCAGTTTAGAATGTTTTTTTCTCATTTCATTTTCTGTTTCTTTTTGGTTTAAAGTTATACCGGAAATTATTCTCTGCCGCTATTGTTCACTTCTGTCCCTCCAACTTTTTTTTCTCCTGACTCGCTATATAAAGTCCGAATTTCAGAAAAATCTATCAATTTTCTACTCGAAGAACAATGCCCGTGCTCGCTGGAATAAACTCGAAAGTGCTCAAAAATGGTTGGTTTTTTTAATTGACTAGTGGTCTCTCCGGAGTGCCCCTCTATTAGAGGGGCCGTTCAATTAGAGGGTGCCATTTTATTTTTCCGGTGTTTTTGAGAAATCTTATAGAAAAATTCGGAATATTTCCGTTAAATTTTATGGATATCTACCAATTCATTTTTTTGCGGAAATGACGTTTTTGTATAATTTTGAGAAAATTTTATAAATTTCGGAATTACCGRCAAATTAAAAAAAAACGAACAATTTATATTATTAAAATGTAGGGTTTCTAGGTCACTGAAAATATATCAATTCCGAGTTCAATGTGAGCTTAAAATTCTTATTGTTTCAATTAAAAATTTTCTGAACCTGGTTGAGAACCAGAAAAGTTAACTTGCTCTTCTTAATTTTCACTCTACAGGTGACTCGGAGCCATCTCCACCACCAGCTGGAATCTACCGTATTTACAACATGCGATTCTGCCCATGGGCTCAACGTGCACTGATCTACGCTTCTGTAAAGAACGTTCCAAGTGAAGTGATCAATATTCATTTGAAAGAGAAACCAGACTGGTACTTCTCGAAGCATTACAAGGGACAAGTGCCAGCTTTGGAGCTTGACGAAGGAAAGAAACATGTGATCGAATCGGCTCACATTCCAGAGTATTTGGATGATTTGTTCCCAGAATCTCGTATTCTTCCATCTGATCCATATGAAAAGGTTCAACAAAAATTGTTGTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGTGTTTTTGAGAAATCTTAT</pcr_primer_p1>
		<pcr_primer_p2>AAGAATTTTAAGCTCACATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CGGTGTTTTTGAGAAATCTTATAGAAAAATTCGGAATATTTCCGTTAAATTTTATGGATATCTACCAATTCATTTTTTTGCGGAAATGACGTTTTTGTATAATTTTGAGAAAATTTTATAAATTTCGGAATTACCGACAAATTAAAAAAAAACGAACAATTTATATTATTAAAATGTAGGGTTTCTAGGTCACTGAAAATATATCAATTCCGAGTTCAATGTGAGCTTAAAATTCTT</canonical_amplicon>
		<polymorphic_amplicon>CGGTGTTTTTGAGAAATCTTATAGAAAAATTCGGAATATTTCCGTTAAATTTTATGGATATCTACCAATTCATTTTTTTGCGGAAATGACGTTTTTGTATAATTTTGAGAAAATTTTATAAATTTCGGAATTACCGRCAAATTAAAAAAAAACGAACAATTTATATTATTAAAATGTAGGGTTTCTAGGTCACTGAAAATATATCAATTCCGAGTTCAATGTGAGCTTAAAATTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39030</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>608589</contig_pos>
        <strand>+</strand>
        <context>CCGRCAAATT[A/G]AAAAAAAACG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGTATAATTTTGAGAAAATTTTATAAATTTCGGAATTACCGACAAATT</left_flank>
        <right_flank>AAAAAAAACGAACAATTTATATTATTAAAATGTAGGGTTTCTAGGTCACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAAATTTAAAAAACAGGAACATTTGGTGTTTGGTTCTTTACTCCTCTGCCAGTTTAGAATGTTTTTTTCTCATTTCATTTTCTGTTTCTTTTTGGTTTAAAGTTATACCGGAAATTATTCTCTGCCGCTATTGTTCACTTCTGTCCCTCCAACTTTTTTTTCTCCTGACTCGCTATATAAAGTCCGAATTTCAGAAAAATCTATCAATTTTCTACTCGAAGAACAATGCCCGTGCTCGCTGGAATAAACTCGAAAGTGCTCAAAAATGGTTGGTTTTTTTAATTGACTAGTGGTCTCTCCGGAGTGCCCCTCTATTAGAGGGGCCGTTCAATTAGAGGGTGCCATTTTATTTTTCCGGTGTTTTTGAGAAATCTTATAGAAAAATTCGGAATATTTCCGTTAAATTTTATGGATATCTACCAATTCATTTTTTTGCGGAAATGACGTTTTTGTATAATTTTGAGAAAATTTTATAAATTTCGGAATTACCGACAAATTAAAAAAAAACGAACAATTTATATTATTAAAATGTAGGGTTTCTAGGTCACTGAAAATATATCAATTCCGAGTTCAATGTGAGCTTAAAATTCTTATTGTTTCAATTAAAAATTTTCTGAACCTGGTTGAGAACCAGAAAAGTTAACTTGCTCTTCTTAATTTTCACTCTACAGGTGACTCGGAGCCATCTCCACCACCAGCTGGAATCTACCGTATTTACAACATGCGATTCTGCCCATGGGCTCAACGTGCACTGATCTACGCTTCTGTAAAGAACGTTCCAAGTGAAGTGATCAATATTCATTTGAAAGAGAAACCAGACTGGTACTTCTCGAAGCATTACAAGGGACAAGTGCCAGCTTTGGAGCTTGACGAAGGAAAGAAACATGTGATCGAATCGGCTCACATTCCAGAGTATTTGGATGATTTGTTCCCAGAATCTCGTATTCTTCCATCTGATCCATATGAAAAGGTTCAACAAAAATTGTTGTTGGAAAGGCT</canonical>
            <polymorphic>CGAAATTTAAAAAACAGGAACATTTGGTGTTTGGTTCTTTACTCCTCTGCCAGTTTAGAATGTTTTTTTCTCATTTCATTTTCTGTTTCTTTTTGGTTTAAAGTTATACCGGAAATTATTCTCTGCCGCTATTGTTCACTTCTGTCCCTCCAACTTTTTTTTCTCCTGACTCGCTATATAAAGTCCGAATTTCAGAAAAATCTATCAATTTTCTACTCGAAGAACAATGCCCGTGCTCGCTGGAATAAACTCGAAAGTGCTCAAAAATGGTTGGTTTTTTTAATTGACTAGTGGTCTCTCCGGAGTGCCCCTCTATTAGAGGGGCCGTTCAATTAGAGGGTGCCATTTTATTTTTCCGGTGTTTTTGAGAAATCTTATAGAAAAATTCGGAATATTTCCGTTAAATTTTATGGATATCTACCAATTCATTTTTTTGCGGAAATGACGTTTTTGTATAATTTTGAGAAAATTTTATAAATTTCGGAATTACCGACAAATTRAAAAAAAACGAACAATTTATATTATTAAAATGTAGGGTTTCTAGGTCACTGAAAATATATCAATTCCGAGTTCAATGTGAGCTTAAAATTCTTATTGTTTCAATTAAAAATTTTCTGAACCTGGTTGAGAACCAGAAAAGTTAACTTGCTCTTCTTAATTTTCACTCTACAGGTGACTCGGAGCCATCTCCACCACCAGCTGGAATCTACCGTATTTACAACATGCGATTCTGCCCATGGGCTCAACGTGCACTGATCTACGCTTCTGTAAAGAACGTTCCAAGTGAAGTGATCAATATTCATTTGAAAGAGAAACCAGACTGGTACTTCTCGAAGCATTACAAGGGACAAGTGCCAGCTTTGGAGCTTGACGAAGGAAAGAAACATGTGATCGAATCGGCTCACATTCCAGAGTATTTGGATGATTTGTTCCCAGAATCTCGTATTCTTCCATCTGATCCATATGAAAAGGTTCAACAAAAATTGTTGTTGGAAAGGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>345 182 121 97 91 58 37 27 21 14 7</canonical_bands>
                <polymorphic_bands>345 182 124 121 91 58 37 21 14 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGTGTTTTTGAGAAATCTTAT</pcr_primer_p1>
		<pcr_primer_p2>AAGAATTTTAAGCTCACATTGAA</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CGGTGTTTTTGAGAAATCTTATAGAAAAATTCGGAATATTTCCGTTAAATTTTATGGATATCTACCAATTCATTTTTTTGCGGAAATGACGTTTTTGTATAATTTTGAGAAAATTTTATAAATTTCGGAATTACCGACAAATTAAAAAAAAACGAACAATTTATATTATTAAAATGTAGGGTTTCTAGGTCACTGAAAATATATCAATTCCGAGTTCAATGTGAGCTTAAAATTCTT</canonical_amplicon>
		<polymorphic_amplicon>CGGTGTTTTTGAGAAATCTTATAGAAAAATTCGGAATATTTCCGTTAAATTTTATGGATATCTACCAATTCATTTTTTTGCGGAAATGACGTTTTTGTATAATTTTGAGAAAATTTTATAAATTTCGGAATTACCGACAAATTRAAAAAAAACGAACAATTTATATTATTAAAATGTAGGGTTTCTAGGTCACTGAAAATATATCAATTCCGAGTTCAATGTGAGCTTAAAATTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39031</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>608754</contig_pos>
        <strand>+</strand>
        <context>TTAATTTTCA[C/T]TCTACAGGTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGAACCTGGTTGAGAACCAGAAAAGTTAACTTGCTCTTCTTAATTTTCA</left_flank>
        <right_flank>TCTACAGGTGACTCGGAGCCATCTCCACCACCAGCTGGAATCTACCGTAT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGACTCGCTATATAAAGTCCGAATTTCAGAAAAATCTATCAATTTTCTACTCGAAGAACAATGCCCGTGCTCGCTGGAATAAACTCGAAAGTGCTCAAAAATGGTTGGTTTTTTTAATTGACTAGTGGTCTCTCCGGAGTGCCCCTCTATTAGAGGGGCCGTTCAATTAGAGGGTGCCATTTTATTTTTCCGGTGTTTTTGAGAAATCTTATAGAAAAATTCGGAATATTTCCGTTAAATTTTATGGATATCTACCAATTCATTTTTTTGCGGAAATGACGTTTTTGTATAATTTTGAGAAAATTTTATAAATTTCGGAATTACCGACAAATTAAAAAAAAACGAACAATTTATATTATTAAAATGTAGGGTTTCTAGGTCACTGAAAATATATCAATTCCGAGTTCAATGTGAGCTTAAAATTCTTATTGTTTCAATTAAAAATTTTCTGAACCTGGTTGAGAACCAGAAAAGTTAACTTGCTCTTCTTAATTTTCACTCTACAGGTGACTCGGAGCCATCTCCACCACCAGCTGGAATCTACCGTATTTACAACATGCGATTCTGCCCATGGGCTCAACGTGCACTGATCTACGCTTCTGTAAAGAACGTTCCAAGTGAAGTGATCAATATTCATTTGAAAGAGAAACCAGACTGGTACTTCTCGAAGCATTACAAGGGACAAGTGCCAGCTTTGGAGCTTGACGAAGGAAAGAAACATGTGATCGAATCGGCTCACATTCCAGAGTATTTGGATGATTTGTTCCCAGAATCTCGTATTCTTCCATCTGATCCATATGAAAAGGTTCAACAAAAATTGTTGTTGGAAAGGCTCGCTGCAGTTGCTCCAGCATTCTACGCTGCTGCACAGGCTGCCAATAATCCGGAGGGTCGTGATGAGAAATACGCTGCTCTTGTGAAGGCGTTTGAAGATGCTGAGAAGTTGTTGACTGGAGATTTCTTCTCTGGTACGTAAGGAGGCATTCAGTAGAGATTGGT</canonical>
            <polymorphic>CTGACTCGCTATATAAAGTCCGAATTTCAGAAAAATCTATCAATTTTCTACTCGAAGAACAATGCCCGTGCTCGCTGGAATAAACTCGAAAGTGCTCAAAAATGGTTGGTTTTTTTAATTGACTAGTGGTCTCTCCGGAGTGCCCCTCTATTAGAGGGGCCGTTCAATTAGAGGGTGCCATTTTATTTTTCCGGTGTTTTTGAGAAATCTTATAGAAAAATTCGGAATATTTCCGTTAAATTTTATGGATATCTACCAATTCATTTTTTTGCGGAAATGACGTTTTTGTATAATTTTGAGAAAATTTTATAAATTTCGGAATTACCGACAAATTAAAAAAAAACGAACAATTTATATTATTAAAATGTAGGGTTTCTAGGTCACTGAAAATATATCAATTCCGAGTTCAATGTGAGCTTAAAATTCTTATTGTTTCAATTAAAAATTTTCTGAACCTGGTTGAGAACCAGAAAAGTTAACTTGCTCTTCTTAATTTTCAYTCTACAGGTGACTCGGAGCCATCTCCACCACCAGCTGGAATCTACCGTATTTACAACATGCGATTCTGCCCATGGGCTCAACGTGCACTGATCTACGCTTCTGTAAAGAACGTTCCAAGTGAAGTGATCAATATTCATTTGAAAGAGAAACCAGACTGGTACTTCTCGAAGCATTACAAGGGACAAGTGCCAGCTTTGGAGCTTGACGAAGGAAAGAAACATGTGATCGAATCGGCTCACATTCCAGAGTATTTGGATGATTTGTTCCCAGAATCTCGTATTCTTCCATCTGATCCATATGAAAAGGTTCAACAAAAATTGTTGTTGGAAAGGCTCGCTGCAGTTGCTCCAGCATTCTACGCTGCTGCACAGGCTGCCAATAATCCGGAGGGTCGTGATGAGAAATACGCTGCTCTTGTGAAGGCGTTTGAAGATGCTGAGAAGTTGTTGACTGGAGATTTCTTCTCTGGTACGTAAGGAGGCATTCAGTAGAGATTGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>187 130 85 80 70 63 55 36 35 34 34 31 28 24 23 19 17 14 14 11 5 3 2</canonical_bands>
                <polymorphic_bands>187 130 96 80 70 63 55 36 35 34 34 31 28 24 23 19 17 14 14 5 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATATCAATTCCGAGTTCAATG</pcr_primer_p1>
		<pcr_primer_p2>AATGAATATTGATCACTTCACTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATATCAATTCCGAGTTCAATGTGAGCTTAAAATTCTTATTGTTTCAATTAAAAATTTTCTGAACCTGGTTGAGAACCAGAAAAGTTAACTTGCTCTTCTTAATTTTCACTCTACAGGTGACTCGGAGCCATCTCCACCACCAGCTGGAATCTACCGTATTTACAACATGCGATTCTGCCCATGGGCTCAACGTGCACTGATCTACGCTTCTGTAAAGAACGTTCCAAGTGAAGTGATCAATATTCATT</canonical_amplicon>
		<polymorphic_amplicon>ATATATCAATTCCGAGTTCAATGTGAGCTTAAAATTCTTATTGTTTCAATTAAAAATTTTCTGAACCTGGTTGAGAACCAGAAAAGTTAACTTGCTCTTCTTAATTTTCAYTCTACAGGTGACTCGGAGCCATCTCCACCACCAGCTGGAATCTACCGTATTTACAACATGCGATTCTGCCCATGGGCTCAACGTGCACTGATCTACGCTTCTGTAAAGAACGTTCCAAGTGAAGTGATCAATATTCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39032</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>608859</contig_pos>
        <strand>+</strand>
        <context>ACGCTTCTGT[A/G]AAGAACGTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACATGCGATTCTGCCCATGGGCTCAACGTGCACTGATCTACGCTTCTGT</left_flank>
        <right_flank>AAGAACGTTCCAAGTGAAGTGATCAATATTCATTTGAAAGAGAAACCAGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGTTTTTTTAATTGACTAGTGGTCTCTCCGGAGTGCCCCTCTATTAGAGGGGCCGTTCAATTAGAGGGTGCCATTTTATTTTTCCGGTGTTTTTGAGAAATCTTATAGAAAAATTCGGAATATTTCCGTTAAATTTTATGGATATCTACCAATTCATTTTTTTGCGGAAATGACGTTTTTGTATAATTTTGAGAAAATTTTATAAATTTCGGAATTACCGACAAATTAAAAAAAAACGAACAATTTATATTATTAAAATGTAGGGTTTCTAGGTCACTGAAAATATATCAATTCCGAGTTCAATGTGAGCTTAAAATTCTTATTGTTTCAATTAAAAATTTTCTGAACCTGGTTGAGAACCAGAAAAGTTAACTTGCTCTTCTTAATTTTCACTCTACAGGTGACTCGGAGCCATCTCCACCACCAGCTGGAATCTACCGTATTTACAACATGCGATTCTGCCCATGGGCTCAACGTGCACTGATCTACGCTTCTGTAAAGAACGTTCCAAGTGAAGTGATCAATATTCATTTGAAAGAGAAACCAGACTGGTACTTCTCGAAGCATTACAAGGGACAAGTGCCAGCTTTGGAGCTTGACGAAGGAAAGAAACATGTGATCGAATCGGCTCACATTCCAGAGTATTTGGATGATTTGTTCCCAGAATCTCGTATTCTTCCATCTGATCCATATGAAAAGGTTCAACAAAAATTGTTGTTGGAAAGGCTCGCTGCAGTTGCTCCAGCATTCTACGCTGCTGCACAGGCTGCCAATAATCCGGAGGGTCGTGATGAGAAATACGCTGCTCTTGTGAAGGCGTTTGAAGATGCTGAGAAGTTGTTGACTGGAGATTTCTTCTCTGGTACGTAAGGAGGCATTCAGTAGAGATTGGTTTTCTATAAAATTAAAAGAAAAATCATGCAAATTTTTTAAATTGTGTTTTTCCAGAACAAAAATACCGTAAGCACTTTAACGCTCCCTGAACCAAGATTTTTGAG</canonical>
            <polymorphic>TTGGTTTTTTTAATTGACTAGTGGTCTCTCCGGAGTGCCCCTCTATTAGAGGGGCCGTTCAATTAGAGGGTGCCATTTTATTTTTCCGGTGTTTTTGAGAAATCTTATAGAAAAATTCGGAATATTTCCGTTAAATTTTATGGATATCTACCAATTCATTTTTTTGCGGAAATGACGTTTTTGTATAATTTTGAGAAAATTTTATAAATTTCGGAATTACCGACAAATTAAAAAAAAACGAACAATTTATATTATTAAAATGTAGGGTTTCTAGGTCACTGAAAATATATCAATTCCGAGTTCAATGTGAGCTTAAAATTCTTATTGTTTCAATTAAAAATTTTCTGAACCTGGTTGAGAACCAGAAAAGTTAACTTGCTCTTCTTAATTTTCACTCTACAGGTGACTCGGAGCCATCTCCACCACCAGCTGGAATCTACCGTATTTACAACATGCGATTCTGCCCATGGGCTCAACGTGCACTGATCTACGCTTCTGTRAAGAACGTTCCAAGTGAAGTGATCAATATTCATTTGAAAGAGAAACCAGACTGGTACTTCTCGAAGCATTACAAGGGACAAGTGCCAGCTTTGGAGCTTGACGAAGGAAAGAAACATGTGATCGAATCGGCTCACATTCCAGAGTATTTGGATGATTTGTTCCCAGAATCTCGTATTCTTCCATCTGATCCATATGAAAAGGTTCAACAAAAATTGTTGTTGGAAAGGCTCGCTGCAGTTGCTCCAGCATTCTACGCTGCTGCACAGGCTGCCAATAATCCGGAGGGTCGTGATGAGAAATACGCTGCTCTTGTGAAGGCGTTTGAAGATGCTGAGAAGTTGTTGACTGGAGATTTCTTCTCTGGTACGTAAGGAGGCATTCAGTAGAGATTGGTTTTCTATAAAATTAAAAGAAAAATCATGCAAATTTTTTAAATTGTGTTTTTCCAGAACAAAAATACCGTAAGCACTTTAACGCTCCCTGAACCAAGATTTTTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATTTACAACATGCGATTCTG</pcr_primer_p1>
		<pcr_primer_p2>ATCAGATGGAAGAATACGAGATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTATTTACAACATGCGATTCTGCCCATGGGCTCAACGTGCACTGATCTACGCTTCTGTAAAGAACGTTCCAAGTGAAGTGATCAATATTCATTTGAAAGAGAAACCAGACTGGTACTTCTCGAAGCATTACAAGGGACAAGTGCCAGCTTTGGAGCTTGACGAAGGAAAGAAACATGTGATCGAATCGGCTCACATTCCAGAGTATTTGGATGATTTGTTCCCAGAATCTCGTATTCTTCCATCTGAT</canonical_amplicon>
		<polymorphic_amplicon>GTATTTACAACATGCGATTCTGCCCATGGGCTCAACGTGCACTGATCTACGCTTCTGTRAAGAACGTTCCAAGTGAAGTGATCAATATTCATTTGAAAGAGAAACCAGACTGGTACTTCTCGAAGCATTACAAGGGACAAGTGCCAGCTTTGGAGCTTGACGAAGGAAAGAAACATGTGATCGAATCGGCTCACATTCCAGAGTATTTGGATGATTTGTTCCCAGAATCTCGTATTCTTCCATCTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39033</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>608925</contig_pos>
        <strand>+</strand>
        <context>ACTTCTCGAA[A/G]CATTACAAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAGTGATCAATATTCATTTGAAAGAGAAACCAGACTGGTACTTCTCGAA</left_flank>
        <right_flank>CATTACAAGGGACAAGTGCCAGCTTTGGAGCTTGACGAAGGAAAGAAACA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGGTGCCATTTTATTTTTCCGGTGTTTTTGAGAAATCTTATAGAAAAATTCGGAATATTTCCGTTAAATTTTATGGATATCTACCAATTCATTTTTTTGCGGAAATGACGTTTTTGTATAATTTTGAGAAAATTTTATAAATTTCGGAATTACCGACAAATTAAAAAAAAACGAACAATTTATATTATTAAAATGTAGGGTTTCTAGGTCACTGAAAATATATCAATTCCGAGTTCAATGTGAGCTTAAAATTCTTATTGTTTCAATTAAAAATTTTCTGAACCTGGTTGAGAACCAGAAAAGTTAACTTGCTCTTCTTAATTTTCACTCTACAGGTGACTCGGAGCCATCTCCACCACCAGCTGGAATCTACCGTATTTACAACATGCGATTCTGCCCATGGGCTCAACGTGCACTGATCTACGCTTCTGTAAAGAACGTTCCAAGTGAAGTGATCAATATTCATTTGAAAGAGAAACCAGACTGGTACTTCTCGAAGCATTACAAGGGACAAGTGCCAGCTTTGGAGCTTGACGAAGGAAAGAAACATGTGATCGAATCGGCTCACATTCCAGAGTATTTGGATGATTTGTTCCCAGAATCTCGTATTCTTCCATCTGATCCATATGAAAAGGTTCAACAAAAATTGTTGTTGGAAAGGCTCGCTGCAGTTGCTCCAGCATTCTACGCTGCTGCACAGGCTGCCAATAATCCGGAGGGTCGTGATGAGAAATACGCTGCTCTTGTGAAGGCGTTTGAAGATGCTGAGAAGTTGTTGACTGGAGATTTCTTCTCTGGTACGTAAGGAGGCATTCAGTAGAGATTGGTTTTCTATAAAATTAAAAGAAAAATCATGCAAATTTTTTAAATTGTGTTTTTCCAGAACAAAAATACCGTAAGCACTTTAACGCTCCCTGAACCAAGATTTTTGAGCTCTAATATCTCGGTTTCTGTGAAACATATCAAAAAGCTGTCAACTGACAAAATGTTAATCATACT</canonical>
            <polymorphic>AGGGTGCCATTTTATTTTTCCGGTGTTTTTGAGAAATCTTATAGAAAAATTCGGAATATTTCCGTTAAATTTTATGGATATCTACCAATTCATTTTTTTGCGGAAATGACGTTTTTGTATAATTTTGAGAAAATTTTATAAATTTCGGAATTACCGACAAATTAAAAAAAAACGAACAATTTATATTATTAAAATGTAGGGTTTCTAGGTCACTGAAAATATATCAATTCCGAGTTCAATGTGAGCTTAAAATTCTTATTGTTTCAATTAAAAATTTTCTGAACCTGGTTGAGAACCAGAAAAGTTAACTTGCTCTTCTTAATTTTCACTCTACAGGTGACTCGGAGCCATCTCCACCACCAGCTGGAATCTACCGTATTTACAACATGCGATTCTGCCCATGGGCTCAACGTGCACTGATCTACGCTTCTGTAAAGAACGTTCCAAGTGAAGTGATCAATATTCATTTGAAAGAGAAACCAGACTGGTACTTCTCGAARCATTACAAGGGACAAGTGCCAGCTTTGGAGCTTGACGAAGGAAAGAAACATGTGATCGAATCGGCTCACATTCCAGAGTATTTGGATGATTTGTTCCCAGAATCTCGTATTCTTCCATCTGATCCATATGAAAAGGTTCAACAAAAATTGTTGTTGGAAAGGCTCGCTGCAGTTGCTCCAGCATTCTACGCTGCTGCACAGGCTGCCAATAATCCGGAGGGTCGTGATGAGAAATACGCTGCTCTTGTGAAGGCGTTTGAAGATGCTGAGAAGTTGTTGACTGGAGATTTCTTCTCTGGTACGTAAGGAGGCATTCAGTAGAGATTGGTTTTCTATAAAATTAAAAGAAAAATCATGCAAATTTTTTAAATTGTGTTTTTCCAGAACAAAAATACCGTAAGCACTTTAACGCTCCCTGAACCAAGATTTTTGAGCTCTAATATCTCGGTTTCTGTGAAACATATCAAAAAGCTGTCAACTGACAAAATGTTAATCATACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATTTACAACATGCGATTCTG</pcr_primer_p1>
		<pcr_primer_p2>ATCAGATGGAAGAATACGAGATT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTATTTACAACATGCGATTCTGCCCATGGGCTCAACGTGCACTGATCTACGCTTCTGTAAAGAACGTTCCAAGTGAAGTGATCAATATTCATTTGAAAGAGAAACCAGACTGGTACTTCTCGAAGCATTACAAGGGACAAGTGCCAGCTTTGGAGCTTGACGAAGGAAAGAAACATGTGATCGAATCGGCTCACATTCCAGAGTATTTGGATGATTTGTTCCCAGAATCTCGTATTCTTCCATCTGAT</canonical_amplicon>
		<polymorphic_amplicon>GTATTTACAACATGCGATTCTGCCCATGGGCTCAACGTGCACTGATCTACGCTTCTGTAAAGAACGTTCCAAGTGAAGTGATCAATATTCATTTGAAAGAGAAACCAGACTGGTACTTCTCGAARCATTACAAGGGACAAGTGCCAGCTTTGGAGCTTGACGAAGGAAAGAAACATGTGATCGAATCGGCTCACATTCCAGAGTATTTGGATGATTTGTTCCCAGAATCTCGTATTCTTCCATCTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39034</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>651088</contig_pos>
        <strand></strand>
        <context>CAAAAAAAAA[C/A]ATCCTAAATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTCAAAAATATGTATTTTTTAATATTATTGCGAAAAATTTCAAAAAAAAA</left_flank>
        <right_flank>ATCCTAAATCCCCGAAAAACGGCGTTGAAAAAATATAGGATTTGNNNNNN</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTTAACAGCAAAATGTCCCACATCCGGGGTTTCTTGACAGTTCGACATGTTGGTTTTCAAAGAATCTGAATAAAATTTTGAGAAGTAAAGATTAATATGCCGTAAAACCTGTATCAGAAGGGCGCCTAATTGAAATAGGCCCCTTGGAGATCCCACGAAAAATAGAAGGTCCGGCCTTTCTGATACAGGTTTTATGGTAATCAGTGAATTGCTATGAACCAAACTTGTTTACCTATTCTTGATCGACTGCTGGCGATTGATTTTTAGAAGGTTTGTTTTTTGAAATCTAAAAGCAGGGATTGATTGAACTAGAGAAAGAAAAACAAAGAGAAGATAATTGAATGTATATAAGGGAGATTAACTCTGAATTTCATCAAATCAACATCGAATCCACAATATTTTATTAAAGGGGGACTCCGACCAAAAATTTTTATTGCCTTAAAATGTTTCAAAAATATGTATTTTTTAATATTATTGCGAAAAATTTCAAAAAAAAACATCCTAAATCCCCGAAAAACGGCGTTGAAAAAATATAGGATTTGNNNNNNNNNNNNNNNNNNNNCCGGTTTTTTTCGGTGTCCGTGGCCTAGGTTTCTCACTGCGCCGGAATTCAAATCCTCGTCCCTCCTAGCAACTTTTTTTTGAAAATTTTTCGCTTTTAATGGCATTTTTCGGGGATTTCGGGTTTAATTCGAATTTTTTCGCTATAATATTGGGAAAATAGACAACTTTTAGAACATTTCAATGCAATAAGGGGGAAAAGCCTACTCCGAAAAAAAAAGCTTGGCATTTACAAGAAGAATCCGGTAAATTAGTCTGAAATAATAACAATAATTATGTGTCAATCGACGAACACTTCTGATTTTATTATAAACAAATCATCAGTTGACAACTTTTTTATCTTTGGCAGGAATCAAGAAAAATTGGATCGAAATGGTTAAATTGTGCTGGATCTAAGGATCGCATTTGTATGTGGTGACTCACCCGTTTTTAATTCA</canonical>
            <polymorphic>TCTTTAACAGCAAAATGTCCCACATCCGGGGTTTCTTGACAGTTCGACATGTTGGTTTTCAAAGAATCTGAATAAAATTTTGAGAAGTAAAGATTAATATGCCGTAAAACCTGTATCAGAAGGGCGCCTAATTGAAATAGGCCCCTTGGAGATCCCACGAAAAATAGAAGGTCCGGCCTTTCTGATACAGGTTTTATGGTAATCAGTGAATTGCTATGAACCAAACTTGTTTACCTATTCTTGATCGACTGCTGGCGATTGATTTTTAGAAGGTTTGTTTTTTGAAATCTAAAAGCAGGGATTGATTGAACTAGAGAAAGAAAAACAAAGAGAAGATAATTGAATGTATATAAGGGAGATTAACTCTGAATTTCATCAAATCAACATCGAATCCACAATATTTTATTAAAGGGGGACTCCGACCAAAAATTTTTATTGCCTTAAAATGTTTCAAAAATATGTATTTTTTAATATTATTGCGAAAAATTTCAAAAAAAAAMATCCTAAATCCCCGAAAAACGGCGTTGAAAAAATATAGGATTTGNNNNNNNNNNNNNNNNNNNNCCGGTTTTTTTCGGTGTCCGTGGCCTAGGTTTCTCACTGCGCCGGAATTCAAATCCTCGTCCCTCCTAGCAACTTTTTTTTGAAAATTTTTCGCTTTTAATGGCATTTTTCGGGGATTTCGGGTTTAATTCGAATTTTTTCGCTATAATATTGGGAAAATAGACAACTTTTAGAACATTTCAATGCAATAAGGGGGAAAAGCCTACTCCGAAAAAAAAAGCTTGGCATTTACAAGAAGAATCCGGTAAATTAGTCTGAAATAATAACAATAATTATGTGTCAATCGACGAACACTTCTGATTTTATTATAAACAAATCATCAGTTGACAACTTTTTTATCTTTGGCAGGAATCAAGAAAAATTGGATCGAAATGGTTAAATTGTGCTGGATCTAAGGATCGCATTTGTATGTGGTGACTCACCCGTTTTTAATTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTATTGCCTTAAAATGTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTGTCTATTTTCCCAATATTATAGC</pcr_primer_p2>
		<pcr_amplicon_size>301</pcr_amplicon_size>
		<canonical_amplicon>TTTTTATTGCCTTAAAATGTTTCAAAAATATGTATTTTTTAATATTATTGCGAAAAATTTCAAAAAAAAACATCCTAAATCCCCGAAAAACGGCGTTGAAAAAATATAGGATTTGNNNNNNNNNNNNNNNNNNNNCCGGTTTTTTTCGGTGTCCGTGGCCTAGGTTTCTCACTGCGCCGGAATTCAAATCCTCGTCCCTCCTAGCAACTTTTTTTTGAAAATTTTTCGCTTTTAATGGCATTTTTCGGGGATTTCGGGTTTAATTCGAATTTTTTCGCTATAATATTGGGAAAATAGACAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTATTGCCTTAAAATGTTTCAAAAATATGTATTTTTTAATATTATTGCGAAAAATTTCAAAAAAAAAMATCCTAAATCCCCGAAAAACGGCGTTGAAAAAATATAGGATTTGNNNNNNNNNNNNNNNNNNNNCCGGTTTTTTTCGGTGTCCGTGGCCTAGGTTTCTCACTGCGCCGGAATTCAAATCCTCGTCCCTCCTAGCAACTTTTTTTTGAAAATTTTTCGCTTTTAATGGCATTTTTCGGGGATTTCGGGTTTAATTCGAATTTTTTCGCTATAATATTGGGAAAATAGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39035</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>653468</contig_pos>
        <strand></strand>
        <context>tttaaggAGT[G/A]TGCATATTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAATTGAGCTTAAACTTGGCCGGGGGCTCCTATTACAAGTTTTAAGGAGT</left_flank>
        <right_flank>TGCATATTTCTGTACTTTTCCAATTTCCTCTGAAAATGTTGTTGTTAATC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAAAAAGCAAGGAAAAGAGATATTTCGCAATCGAGAGTTTTGGAAGTGAGTATTTCCGTATCCGAAAATTCGTGATCCTAAAAAAAAACTATTTATTTGCCCATACAATTATGGATTTTAAGATTTCTAATTACAAATTCAAGAAATTGTCAAGCTTTAAAATTCTAGATTCAGGATATTTTACAGATGTTATTACTAGGAACGATAAAATTAAGACTTTTTCTTCAGTTTTTCGGTGCTTCATCGGTTCGATTTGATTAACGATTTTCTGGCATCGAAAAACCTGTAACAGAAGGGCAATCTAACTTTTGACTTTAACTCAATTTTTCTCATTTCCTGTGAATGATATCAAAAAGTTTTCAACCGATAAAATGTTGGTCATAATATCAAAAACATTTTATAAGTTGGCACATTTTTCATATCTTCCACTTCCACAGGATCTGAGGTAATTGAGCTTAAACTTGGCCGGGGGCTCCTATTACAAGTTTTAAGGAGTGTGCATATTTCTGTACTTTTCCAATTTCCTCTGAAAATGTTGTTGTTAATCAATTTTATAAAAACGGCCGACCGAAAGCTTTTTATCTTTTTCCACACTCTTCGTTTCCCCATCATGTTTTCTGTTGGTGTCACTCTTTTTTTCGAACAGTCTACCTTTTTTCATTCAGCGAATGCCACCTGAATAAAAACCACTTTTCAACATTTATTGACTCAAAACTTCCGAACAACGATCAGAATTTTTTTCCAGGTATTCGTTGTCATTCTCATGAGTTTTCATTGTTCACTCCTCTTAAAAAAGTACATCAAAGTGCTCAGTGATCATTTCGGAAGGTGGGTGTGAACAATCCCATTGGGCAATCAGTGACTCGGAATGGCACATTGTCGAATCAGCACACACAAATACAAATATCTAAACACATTCTTTTGAGTGGTTTTTGAACACTTTTGATCGACAGTTTACTAGTGTGGACAAGATAGCGAAGAGAGGGAAGACTCGGAG</canonical>
            <polymorphic>GAAAAAAAAGCAAGGAAAAGAGATATTTCGCAATCGAGAGTTTTGGAAGTGAGTATTTCCGTATCCGAAAATTCGTGATCCTAAAAAAAAACTATTTATTTGCCCATACAATTATGGATTTTAAGATTTCTAATTACAAATTCAAGAAATTGTCAAGCTTTAAAATTCTAGATTCAGGATATTTTACAGATGTTATTACTAGGAACGATAAAATTAAGACTTTTTCTTCAGTTTTTCGGTGCTTCATCGGTTCGATTTGATTAACGATTTTCTGGCATCGAAAAACCTGTAACAGAAGGGCAATCTAACTTTTGACTTTAACTCAATTTTTCTCATTTCCTGTGAATGATATCAAAAAGTTTTCAACCGATAAAATGTTGGTCATAATATCAAAAACATTTTATAAGTTGGCACATTTTTCATATCTTCCACTTCCACAGGATCTGAGGTAATTGAGCTTAAACTTGGCCGGGGGCTCCTATTACAAGTTTTAAGGAGTRTGCATATTTCTGTACTTTTCCAATTTCCTCTGAAAATGTTGTTGTTAATCAATTTTATAAAAACGGCCGACCGAAAGCTTTTTATCTTTTTCCACACTCTTCGTTTCCCCATCATGTTTTCTGTTGGTGTCACTCTTTTTTTCGAACAGTCTACCTTTTTTCATTCAGCGAATGCCACCTGAATAAAAACCACTTTTCAACATTTATTGACTCAAAACTTCCGAACAACGATCAGAATTTTTTTCCAGGTATTCGTTGTCATTCTCATGAGTTTTCATTGTTCACTCCTCTTAAAAAAGTACATCAAAGTGCTCAGTGATCATTTCGGAAGGTGGGTGTGAACAATCCCATTGGGCAATCAGTGACTCGGAATGGCACATTGTCGAATCAGCACACACAAATACAAATATCTAAACACATTCTTTTGAGTGGTTTTTGAACACTTTTGATCGACAGTTTACTAGTGTGGACAAGATAGCGAAGAGAGGGAAGACTCGGAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>164 103 92 92 69 63 51 45 33 32 27 26 24 24 20 18 16 16 15 14 13 11 7 6 4 3 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>164 157 103 92 69 51 45 33 32 27 26 24 24 20 18 16 16 15 14 13 11 7 6 4 3 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGATTTGATTAACGATTTTCT</pcr_primer_p1>
		<pcr_primer_p2>AAATTGATTAACAACAACATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>304</pcr_amplicon_size>
		<canonical_amplicon>TCGATTTGATTAACGATTTTCTGGCATCGAAAAACCTGTAACAGAAGGGCAATCTAACTTTTGACTTTAACTCAATTTTTCTCATTTCCTGTGAATGATATCAAAAAGTTTTCAACCGATAAAATGTTGGTCATAATATCAAAAACATTTTATAAGTTGGCACATTTTTCATATCTTCCACTTCCACAGGATCTGAGGTAATTGAGCTTAAACTTGGCCGGGGGCTCCTATTACAAGTTTTAAGGAGTGTGCATATTTCTGTACTTTTCCAATTTCCTCTGAAAATGTTGTTGTTAATCAATTT</canonical_amplicon>
		<polymorphic_amplicon>TCGATTTGATTAACGATTTTCTGGCATCGAAAAACCTGTAACAGAAGGGCAATCTAACTTTTGACTTTAACTCAATTTTTCTCATTTCCTGTGAATGATATCAAAAAGTTTTCAACCGATAAAATGTTGGTCATAATATCAAAAACATTTTATAAGTTGGCACATTTTTCATATCTTCCACTTCCACAGGATCTGAGGTAATTGAGCTTAAACTTGGCCGGGGGCTCCTATTACAAGTTTTAAGGAGTRTGCATATTTCTGTACTTTTCCAATTTCCTCTGAAAATGTTGTTGTTAATCAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39038</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>766262</contig_pos>
        <strand>+</strand>
        <context>TATGCTTGCG[C/G]ATATTAGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTGAAAGTCGCCATGGCCTCTTCATCGTGTTTTACTTTGATATGCTTGCG</left_flank>
        <right_flank>ATATTAGAAGCGTCAGTGCGATAAGAGCATTTTGGACAGTTGAGTTTTAG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTCAAATCTACGGTCATGCGACTTCAAATGTTCTACAAAAAGAGCTCTGGTGCTCACAGCCACATCGCAGTCTGAAACGGGACAAGAAATTCGCCGGGAACTTCCACCTCCTCCAGCCGTCTCTCTATTCATTGCCAAATCACCTTCAGTCACCCCATGAAATCTCTGAATTTGTTTTTGCTGCTCAATTGTCTACTACCATCTAATGGACAACCTTTCTAGGCGGTTCACTTGTTCCTTCCCCGCTTCTCCCGTCATTTTCGCCGTCACTACCAAAAACGGAAATTGTTGCAGGATCCACCACGACAACCACTCTCTCCGGATTCCCATGCTTCACTCTTTTATGTGACTTCAACCCAGACAACGATGCACACTGATGGCCACACAGATCACATGTTTTCACTTCAGTTCTGTTCAACTCTGATTTTTTTTGCAAGGAGCGCAGCATTGAAAGTCGCCATGGCCTCTTCATCGTGTTTTACTTTGATATGCTTGCGGATATTAGAAGCGTCAGTGCGATAAGAGCATTTTGGACAGTTGAGTTTTAGCTCGGACAGTCGCATTTTTACCTGAAAATCGATTTTAACCAGTGAAGCTTCATTTATTTTCGAAAAAAACAATAAAGTGACGGATACTGTATTTTTCCAGATACGCAGACACTCAATGGACATGGGCTGCCCGGAAGTCATGAAGTTCTGAAAAAAATCCGTGTCACATGAATTCCATTCCCTCTATTCCCTCTAATGAGTTTTCACAACTCAAATTTCTACTATTCCGGCTACTTATTCTATTTTCTACTCTTATTACTATTTTATTTTTTCTTCGGTAAGTTTCCCACTGGTGAGTCTTCAAATCATATGTTTCTGAGACTCCCTTTGAATAGTTAGTGCCAGCTGTATCACACGATCTGCTGGCCTTTCCGTTCATGGTTGAAGGCGATGAAAACAACTTTTTCTCGTTCATTTTTTACGAATAACAACGAAATTTGAGATTTTCCC</canonical>
            <polymorphic>AGTTCAAATCTACGGTCATGCGACTTCAAATGTTCTACAAAAAGAGCTCTGGTGCTCACAGCCACATCGCAGTCTGAAACGGGACAAGAAATTCGCCGGGAACTTCCACCTCCTCCAGCCGTCTCTCTATTCATTGCCAAATCACCTTCAGTCACCCCATGAAATCTCTGAATTTGTTTTTGCTGCTCAATTGTCTACTACCATCTAATGGACAACCTTTCTAGGCGGTTCACTTGTTCCTTCCCCGCTTCTCCCGTCATTTTCGCCGTCACTACCAAAAACGGAAATTGTTGCAGGATCCACCACGACAACCACTCTCTCCGGATTCCCATGCTTCACTCTTTTATGTGACTTCAACCCAGACAACGATGCACACTGATGGCCACACAGATCACATGTTTTCACTTCAGTTCTGTTCAACTCTGATTTTTTTTGCAAGGAGCGCAGCATTGAAAGTCGCCATGGCCTCTTCATCGTGTTTTACTTTGATATGCTTGCGSATATTAGAAGCGTCAGTGCGATAAGAGCATTTTGGACAGTTGAGTTTTAGCTCGGACAGTCGCATTTTTACCTGAAAATCGATTTTAACCAGTGAAGCTTCATTTATTTTCGAAAAAAACAATAAAGTGACGGATACTGTATTTTTCCAGATACGCAGACACTCAATGGACATGGGCTGCCCGGAAGTCATGAAGTTCTGAAAAAAATCCGTGTCACATGAATTCCATTCCCTCTATTCCCTCTAATGAGTTTTCACAACTCAAATTTCTACTATTCCGGCTACTTATTCTATTTTCTACTCTTATTACTATTTTATTTTTTCTTCGGTAAGTTTCCCACTGGTGAGTCTTCAAATCATATGTTTCTGAGACTCCCTTTGAATAGTTAGTGCCAGCTGTATCACACGATCTGCTGGCCTTTCCGTTCATGGTTGAAGGCGATGAAAACAACTTTTTCTCGTTCATTTTTTACGAATAACAACGAAATTTGAGATTTTCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCACATGTTTTCACTTCAGTT</pcr_primer_p1>
		<pcr_primer_p2>CAGTATCCGTCACTTTATTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCACATGTTTTCACTTCAGTTCTGTTCAACTCTGATTTTTTTTGCAAGGAGCGCAGCATTGAAAGTCGCCATGGCCTCTTCATCGTGTTTTACTTTGATATGCTTGCGGATATTAGAAGCGTCAGTGCGATAAGAGCATTTTGGACAGTTGAGTTTTAGCTCGGACAGTCGCATTTTTACCTGAAAATCGATTTTAACCAGTGAAGCTTCATTTATTTTCGAAAAAAACAATAAAGTGACGGATACTG</canonical_amplicon>
		<polymorphic_amplicon>GATCACATGTTTTCACTTCAGTTCTGTTCAACTCTGATTTTTTTTGCAAGGAGCGCAGCATTGAAAGTCGCCATGGCCTCTTCATCGTGTTTTACTTTGATATGCTTGCGSATATTAGAAGCGTCAGTGCGATAAGAGCATTTTGGACAGTTGAGTTTTAGCTCGGACAGTCGCATTTTTACCTGAAAATCGATTTTAACCAGTGAAGCTTCATTTATTTTCGAAAAAAACAATAAAGTGACGGATACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39039</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>766366</contig_pos>
        <strand>+</strand>
        <context>GAAGCTTCAT[A/T]TATTTTCGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGACAGTCGCATTTTTACCTGAAAATCGATTTTAACCAGTGAAGCTTCAT</left_flank>
        <right_flank>TATTTTCGAAAAAAACAATAAAGTGACGGATACTGTATTTTTCCAGATAC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCACCTCCTCCAGCCGTCTCTCTATTCATTGCCAAATCACCTTCAGTCACCCCATGAAATCTCTGAATTTGTTTTTGCTGCTCAATTGTCTACTACCATCTAATGGACAACCTTTCTAGGCGGTTCACTTGTTCCTTCCCCGCTTCTCCCGTCATTTTCGCCGTCACTACCAAAAACGGAAATTGTTGCAGGATCCACCACGACAACCACTCTCTCCGGATTCCCATGCTTCACTCTTTTATGTGACTTCAACCCAGACAACGATGCACACTGATGGCCACACAGATCACATGTTTTCACTTCAGTTCTGTTCAACTCTGATTTTTTTTGCAAGGAGCGCAGCATTGAAAGTCGCCATGGCCTCTTCATCGTGTTTTACTTTGATATGCTTGCGGATATTAGAAGCGTCAGTGCGATAAGAGCATTTTGGACAGTTGAGTTTTAGCTCGGACAGTCGCATTTTTACCTGAAAATCGATTTTAACCAGTGAAGCTTCATTTATTTTCGAAAAAAACAATAAAGTGACGGATACTGTATTTTTCCAGATACGCAGACACTCAATGGACATGGGCTGCCCGGAAGTCATGAAGTTCTGAAAAAAATCCGTGTCACATGAATTCCATTCCCTCTATTCCCTCTAATGAGTTTTCACAACTCAAATTTCTACTATTCCGGCTACTTATTCTATTTTCTACTCTTATTACTATTTTATTTTTTCTTCGGTAAGTTTCCCACTGGTGAGTCTTCAAATCATATGTTTCTGAGACTCCCTTTGAATAGTTAGTGCCAGCTGTATCACACGATCTGCTGGCCTTTCCGTTCATGGTTGAAGGCGATGAAAACAACTTTTTCTCGTTCATTTTTTACGAATAACAACGAAATTTGAGATTTTCCCTTTGATCTTTGTAGTTTCAGAGGCTTTCTCGACTTCTGCATCGCCGCTTCATTCTATTTCTGCTGAAGTTTCATGTCATGTCTGCGCTACTCAAGAATTTATTT</canonical>
            <polymorphic>TCCACCTCCTCCAGCCGTCTCTCTATTCATTGCCAAATCACCTTCAGTCACCCCATGAAATCTCTGAATTTGTTTTTGCTGCTCAATTGTCTACTACCATCTAATGGACAACCTTTCTAGGCGGTTCACTTGTTCCTTCCCCGCTTCTCCCGTCATTTTCGCCGTCACTACCAAAAACGGAAATTGTTGCAGGATCCACCACGACAACCACTCTCTCCGGATTCCCATGCTTCACTCTTTTATGTGACTTCAACCCAGACAACGATGCACACTGATGGCCACACAGATCACATGTTTTCACTTCAGTTCTGTTCAACTCTGATTTTTTTTGCAAGGAGCGCAGCATTGAAAGTCGCCATGGCCTCTTCATCGTGTTTTACTTTGATATGCTTGCGGATATTAGAAGCGTCAGTGCGATAAGAGCATTTTGGACAGTTGAGTTTTAGCTCGGACAGTCGCATTTTTACCTGAAAATCGATTTTAACCAGTGAAGCTTCATWTATTTTCGAAAAAAACAATAAAGTGACGGATACTGTATTTTTCCAGATACGCAGACACTCAATGGACATGGGCTGCCCGGAAGTCATGAAGTTCTGAAAAAAATCCGTGTCACATGAATTCCATTCCCTCTATTCCCTCTAATGAGTTTTCACAACTCAAATTTCTACTATTCCGGCTACTTATTCTATTTTCTACTCTTATTACTATTTTATTTTTTCTTCGGTAAGTTTCCCACTGGTGAGTCTTCAAATCATATGTTTCTGAGACTCCCTTTGAATAGTTAGTGCCAGCTGTATCACACGATCTGCTGGCCTTTCCGTTCATGGTTGAAGGCGATGAAAACAACTTTTTCTCGTTCATTTTTTACGAATAACAACGAAATTTGAGATTTTCCCTTTGATCTTTGTAGTTTCAGAGGCTTTCTCGACTTCTGCATCGCCGCTTCATTCTATTTCTGCTGAAGTTTCATGTCATGTCTGCGCTACTCAAGAATTTATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTTGGACAGTTGAGTTTTAG</pcr_primer_p1>
		<pcr_primer_p2>CGGAATAGTAGAAATTTGAGTTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CATTTTGGACAGTTGAGTTTTAGCTCGGACAGTCGCATTTTTACCTGAAAATCGATTTTAACCAGTGAAGCTTCATTTATTTTCGAAAAAAACAATAAAGTGACGGATACTGTATTTTTCCAGATACGCAGACACTCAATGGACATGGGCTGCCCGGAAGTCATGAAGTTCTGAAAAAAATCCGTGTCACATGAATTCCATTCCCTCTATTCCCTCTAATGAGTTTTCACAACTCAAATTTCTACTATTCCG</canonical_amplicon>
		<polymorphic_amplicon>CATTTTGGACAGTTGAGTTTTAGCTCGGACAGTCGCATTTTTACCTGAAAATCGATTTTAACCAGTGAAGCTTCATWTATTTTCGAAAAAAACAATAAAGTGACGGATACTGTATTTTTCCAGATACGCAGACACTCAATGGACATGGGCTGCCCGGAAGTCATGAAGTTCTGAAAAAAATCCGTGTCACATGAATTCCATTCCCTCTATTCCCTCTAATGAGTTTTCACAACTCAAATTTCTACTATTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39040</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>772017</contig_pos>
        <strand></strand>
        <context>TCCATAAGTT[T/G]GTGATAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CAAAGAGTCAACAAGCTTGAGAGTTAAAACATTTGGTCTATCCATAAGTT</left_flank>
        <right_flank>GTGATAAATTGGGTTAATTGGTTCATTTTTTATTTTTTCATTATCTTTAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAAAAATGAACATAGAAGATCTCTTGTTGTAGACTAAATGAAGATTCCTTGATTGATTAAATATTTTATCATAAACTTTTAATGCTTATTAAATTTTAATACAAAATCCTAAGAATCAAATATTTTACAATGAGATTCTTCAATTCTGATTTCAAAGAAACATCAAGTTCCGAAAAGAGCTTCATTATTATAACTCCAAAAGAGAAAGATAAAATACAACTAGTTGACCATCTAGATGAAGAAAAAATAGAAAACAATTAAAAAGTAAGTGAAGGAGCAAGTATTACTCAAAAATCAATGACTACTAATAGATCCGAAGGATTGAATAAAATGAATGCATCATTTCTTAGAGCTCTAAAACGTGGATCTGGTTTTAAGAGGATCTAGAAACTTCTAAGATGTAATTCTACATGAAGATCACACCTATTGAAATCGATAAGATTATTCAAAGAGTCAACAAGCTTGAGAGTTAAAACATTTGGTCTATCCATAAGTTTGTGATAAATTGGGTTAATTGGTTCATTTTTTATTTTTTCATTATCTTTATCTTTAAGAATTGGAAATTTACAAATAACGTTGCTTTGTCTTTCATCGATAAAAGTATCACAAACTAGATTGCAAGATAAATAAACAAAATCTAGATTTTTATTACCTTCACCAGGTGAATGTCTTTCAGATCCTTCTAGTAACTGAAGAATACCATCAACTTTGACTACTGCAAGCTCATTTATTTTATTACTTGTAGGAAAATCAAAATAAAATGTTTTTTCATTAATTCTGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTATAGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGATTCTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATGATTTACTTCCTCAATCAATAAGAGGTTGTATTATTGGAAAGAGTGGATGTGGAAAGACTAATTTA</canonical>
            <polymorphic>TTTCAAAAATGAACATAGAAGATCTCTTGTTGTAGACTAAATGAAGATTCCTTGATTGATTAAATATTTTATCATAAACTTTTAATGCTTATTAAATTTTAATACAAAATCCTAAGAATCAAATATTTTACAATGAGATTCTTCAATTCTGATTTCAAAGAAACATCAAGTTCCGAAAAGAGCTTCATTATTATAACTCCAAAAGAGAAAGATAAAATACAACTAGTTGACCATCTAGATGAAGAAAAAATAGAAAACAATTAAAAAGTAAGTGAAGGAGCAAGTATTACTCAAAAATCAATGACTACTAATAGATCCGAAGGATTGAATAAAATGAATGCATCATTTCTTAGAGCTCTAAAACGTGGATCTGGTTTTAAGAGGATCTAGAAACTTCTAAGATGTAATTCTACATGAAGATCACACCTATTGAAATCGATAAGATTATTCAAAGAGTCAACAAGCTTGAGAGTTAAAACATTTGGTCTATCCATAAGTTKGTGATAAATTGGGTTAATTGGTTCATTTTTTATTTTTTCATTATCTTTATCTTTAAGAATTGGAAATTTACAAATAACGTTGCTTTGTCTTTCATCGATAAAAGTATCACAAACTAGATTGCAAGATAAATAAACAAAATCTAGATTTTTATTACCTTCACCAGGTGAATGTCTTTCAGATCCTTCTAGTAACTGAAGAATACCATCAACTTTGACTACTGCAAGCTCATTTATTTTATTACTTGTAGGAAAATCAAAATAAAATGTTTTTTCATTAATTCTGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTATAGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGATTCTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATGATTTACTTCCTCAATCAATAAGAGGTTGTATTATTGGAAAGAGTGGATGTGGAAAGACTAATTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAGATCACACCTATTGAAATC</pcr_primer_p1>
		<pcr_primer_p2>CCTGGTGAAGGTAATAAAAATCT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGAAGATCACACCTATTGAAATCGATAAGATTATTCAAAGAGTCAACAAGCTTGAGAGTTAAAACATTTGGTCTATCCATAAGTTTGTGATAAATTGGGTTAATTGGTTCATTTTTTATTTTTTCATTATCTTTATCTTTAAGAATTGGAAATTTACAAATAACGTTGCTTTGTCTTTCATCGATAAAAGTATCACAAACTAGATTGCAAGATAAATAAACAAAATCTAGATTTTTATTACCTTCACCAGG</canonical_amplicon>
		<polymorphic_amplicon>TGAAGATCACACCTATTGAAATCGATAAGATTATTCAAAGAGTCAACAAGCTTGAGAGTTAAAACATTTGGTCTATCCATAAGTTKGTGATAAATTGGGTTAATTGGTTCATTTTTTATTTTTTCATTATCTTTATCTTTAAGAATTGGAAATTTACAAATAACGTTGCTTTGTCTTTCATCGATAAAAGTATCACAAACTAGATTGCAAGATAAATAAACAAAATCTAGATTTTTATTACCTTCACCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39041</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>772113</contig_pos>
        <strand></strand>
        <context>TGTCTTTCAT[C/T]GATAAAAGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTATCTTTAAGAATTGGAAATTTACAAATAACGTTGCTTTGTCTTTCAT</left_flank>
        <right_flank>GATAAAAGTATCACAAACTAGATTGCAAGATAAATAAACAAAATCTAGAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTAATACAAAATCCTAAGAATCAAATATTTTACAATGAGATTCTTCAATTCTGATTTCAAAGAAACATCAAGTTCCGAAAAGAGCTTCATTATTATAACTCCAAAAGAGAAAGATAAAATACAACTAGTTGACCATCTAGATGAAGAAAAAATAGAAAACAATTAAAAAGTAAGTGAAGGAGCAAGTATTACTCAAAAATCAATGACTACTAATAGATCCGAAGGATTGAATAAAATGAATGCATCATTTCTTAGAGCTCTAAAACGTGGATCTGGTTTTAAGAGGATCTAGAAACTTCTAAGATGTAATTCTACATGAAGATCACACCTATTGAAATCGATAAGATTATTCAAAGAGTCAACAAGCTTGAGAGTTAAAACATTTGGTCTATCCATAAGTTTGTGATAAATTGGGTTAATTGGTTCATTTTTTATTTTTTCATTATCTTTATCTTTAAGAATTGGAAATTTACAAATAACGTTGCTTTGTCTTTCATCGATAAAAGTATCACAAACTAGATTGCAAGATAAATAAACAAAATCTAGATTTTTATTACCTTCACCAGGTGAATGTCTTTCAGATCCTTCTAGTAACTGAAGAATACCATCAACTTTGACTACTGCAAGCTCATTTATTTTATTACTTGTAGGAAAATCAAAATAAAATGTTTTTTCATTAATTCTGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTATAGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGATTCTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATGATTTACTTCCTCAATCAATAAGAGGTTGTATTATTGGAAAGAGTGGATGTGGAAAGACTAATTTACTTATGAATTTGCTATTAGAAGAATACCTTGATTACAATAATTTATACATCTTTAGTACAACTTTATTTCAACCTTGTTATCAAGCATTAATTAAT</canonical>
            <polymorphic>TTTTAATACAAAATCCTAAGAATCAAATATTTTACAATGAGATTCTTCAATTCTGATTTCAAAGAAACATCAAGTTCCGAAAAGAGCTTCATTATTATAACTCCAAAAGAGAAAGATAAAATACAACTAGTTGACCATCTAGATGAAGAAAAAATAGAAAACAATTAAAAAGTAAGTGAAGGAGCAAGTATTACTCAAAAATCAATGACTACTAATAGATCCGAAGGATTGAATAAAATGAATGCATCATTTCTTAGAGCTCTAAAACGTGGATCTGGTTTTAAGAGGATCTAGAAACTTCTAAGATGTAATTCTACATGAAGATCACACCTATTGAAATCGATAAGATTATTCAAAGAGTCAACAAGCTTGAGAGTTAAAACATTTGGTCTATCCATAAGTTTGTGATAAATTGGGTTAATTGGTTCATTTTTTATTTTTTCATTATCTTTATCTTTAAGAATTGGAAATTTACAAATAACGTTGCTTTGTCTTTCATYGATAAAAGTATCACAAACTAGATTGCAAGATAAATAAACAAAATCTAGATTTTTATTACCTTCACCAGGTGAATGTCTTTCAGATCCTTCTAGTAACTGAAGAATACCATCAACTTTGACTACTGCAAGCTCATTTATTTTATTACTTGTAGGAAAATCAAAATAAAATGTTTTTTCATTAATTCTGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTATAGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGATTCTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATGATTTACTTCCTCAATCAATAAGAGGTTGTATTATTGGAAAGAGTGGATGTGGAAAGACTAATTTACTTATGAATTTGCTATTAGAAGAATACCTTGATTACAATAATTTATACATCTTTAGTACAACTTTATTTCAACCTTGTTATCAAGCATTAATTAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATCGAT</site>
                <isoschizomers>
                    <enzyme>BanIII</enzyme>
                    <enzyme>Bsa29I</enzyme>
                    <enzyme>BscI</enzyme>
                    <enzyme>BseCI</enzyme>
                    <enzyme>BsiXI</enzyme>
                    <enzyme>Bsp106I</enzyme>
                    <enzyme>BspDI</enzyme>
                    <enzyme>BspXI</enzyme>
                    <enzyme>Bsu15I</enzyme>
                    <enzyme>BsuTUI</enzyme>
                    <enzyme>ClaI</enzyme>
                    <enzyme>ZhoI</enzyme>
                </isoschizomers>
                <canonical_bands>501 340 159</canonical_bands>
                <polymorphic_bands>660 340</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 341 159</canonical_bands>
                <polymorphic_bands>659 341</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTGAGAGTTAAAACATTTGGTC</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTTGATGGTATTCTTCAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTGAGAGTTAAAACATTTGGTCTATCCATAAGTTTGTGATAAATTGGGTTAATTGGTTCATTTTTTATTTTTTCATTATCTTTATCTTTAAGAATTGGAAATTTACAAATAACGTTGCTTTGTCTTTCATCGATAAAAGTATCACAAACTAGATTGCAAGATAAATAAACAAAATCTAGATTTTTATTACCTTCACCAGGTGAATGTCTTTCAGATCCTTCTAGTAACTGAAGAATACCATCAACTTTG</canonical_amplicon>
		<polymorphic_amplicon>CTTGAGAGTTAAAACATTTGGTCTATCCATAAGTTTGTGATAAATTGGGTTAATTGGTTCATTTTTTATTTTTTCATTATCTTTATCTTTAAGAATTGGAAATTTACAAATAACGTTGCTTTGTCTTTCATYGATAAAAGTATCACAAACTAGATTGCAAGATAAATAAACAAAATCTAGATTTTTATTACCTTCACCAGGTGAATGTCTTTCAGATCCTTCTAGTAACTGAAGAATACCATCAACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39042</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>772138</contig_pos>
        <strand></strand>
        <context>AAACTAGATT[G/A]CAAGATARAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAAATAACGTTGCTTTGTCTTTCATCGATAAAAGTATCACAAACTAGATT</left_flank>
        <right_flank>CAAGATAAATAAACAAAATCTAGATTTTTATTACCTTCACCAGGTGAATG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATATTTTACAATGAGATTCTTCAATTCTGATTTCAAAGAAACATCAAGTTCCGAAAAGAGCTTCATTATTATAACTCCAAAAGAGAAAGATAAAATACAACTAGTTGACCATCTAGATGAAGAAAAAATAGAAAACAATTAAAAAGTAAGTGAAGGAGCAAGTATTACTCAAAAATCAATGACTACTAATAGATCCGAAGGATTGAATAAAATGAATGCATCATTTCTTAGAGCTCTAAAACGTGGATCTGGTTTTAAGAGGATCTAGAAACTTCTAAGATGTAATTCTACATGAAGATCACACCTATTGAAATCGATAAGATTATTCAAAGAGTCAACAAGCTTGAGAGTTAAAACATTTGGTCTATCCATAAGTTTGTGATAAATTGGGTTAATTGGTTCATTTTTTATTTTTTCATTATCTTTATCTTTAAGAATTGGAAATTTACAAATAACGTTGCTTTGTCTTTCATCGATAAAAGTATCACAAACTAGATTGCAAGATAAATAAACAAAATCTAGATTTTTATTACCTTCACCAGGTGAATGTCTTTCAGATCCTTCTAGTAACTGAAGAATACCATCAACTTTGACTACTGCAAGCTCATTTATTTTATTACTTGTAGGAAAATCAAAATAAAATGTTTTTTCATTAATTCTGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTATAGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGATTCTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATGATTTACTTCCTCAATCAATAAGAGGTTGTATTATTGGAAAGAGTGGATGTGGAAAGACTAATTTACTTATGAATTTGCTATTAGAAGAATACCTTGATTACAATAATTTATACATCTTTAGTACAACTTTATTTCAACCTTGTTATCAAGCATTAATTAATGGTTTCGAAAATGGATTAAGTAAAA</canonical>
            <polymorphic>AATATTTTACAATGAGATTCTTCAATTCTGATTTCAAAGAAACATCAAGTTCCGAAAAGAGCTTCATTATTATAACTCCAAAAGAGAAAGATAAAATACAACTAGTTGACCATCTAGATGAAGAAAAAATAGAAAACAATTAAAAAGTAAGTGAAGGAGCAAGTATTACTCAAAAATCAATGACTACTAATAGATCCGAAGGATTGAATAAAATGAATGCATCATTTCTTAGAGCTCTAAAACGTGGATCTGGTTTTAAGAGGATCTAGAAACTTCTAAGATGTAATTCTACATGAAGATCACACCTATTGAAATCGATAAGATTATTCAAAGAGTCAACAAGCTTGAGAGTTAAAACATTTGGTCTATCCATAAGTTTGTGATAAATTGGGTTAATTGGTTCATTTTTTATTTTTTCATTATCTTTATCTTTAAGAATTGGAAATTTACAAATAACGTTGCTTTGTCTTTCATCGATAAAAGTATCACAAACTAGATTRCAAGATAAATAAACAAAATCTAGATTTTTATTACCTTCACCAGGTGAATGTCTTTCAGATCCTTCTAGTAACTGAAGAATACCATCAACTTTGACTACTGCAAGCTCATTTATTTTATTACTTGTAGGAAAATCAAAATAAAATGTTTTTTCATTAATTCTGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTATAGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGATTCTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATGATTTACTTCCTCAATCAATAAGAGGTTGTATTATTGGAAAGAGTGGATGTGGAAAGACTAATTTACTTATGAATTTGCTATTAGAAGAATACCTTGATTACAATAATTTATACATCTTTAGTACAACTTTATTTCAACCTTGTTATCAAGCATTAATTAATGGTTTCGAAAATGGATTAAGTAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>336 281 219 100 64</canonical_bands>
                <polymorphic_bands>381 336 219 64</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTGAGAGTTAAAACATTTGGTC</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTTGATGGTATTCTTCAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTGAGAGTTAAAACATTTGGTCTATCCATAAGTTTGTGATAAATTGGGTTAATTGGTTCATTTTTTATTTTTTCATTATCTTTATCTTTAAGAATTGGAAATTTACAAATAACGTTGCTTTGTCTTTCATCGATAAAAGTATCACAAACTAGATTGCAAGATAAATAAACAAAATCTAGATTTTTATTACCTTCACCAGGTGAATGTCTTTCAGATCCTTCTAGTAACTGAAGAATACCATCAACTTTG</canonical_amplicon>
		<polymorphic_amplicon>CTTGAGAGTTAAAACATTTGGTCTATCCATAAGTTTGTGATAAATTGGGTTAATTGGTTCATTTTTTATTTTTTCATTATCTTTATCTTTAAGAATTGGAAATTTACAAATAACGTTGCTTTGTCTTTCATCGATAAAAGTATCACAAACTAGATTRCAAGATAAATAAACAAAATCTAGATTTTTATTACCTTCACCAGGTGAATGTCTTTCAGATCCTTCTAGTAACTGAAGAATACCATCAACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39043</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>772146</contig_pos>
        <strand></strand>
        <context>TTRCAAGATA[A/G]ATAAACAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTGCTTTGTCTTTCATCGATAAAAGTATCACAAACTAGATTGCAAGATA</left_flank>
        <right_flank>ATAAACAAAATCTAGATTTTTATTACCTTCACCAGGTGAATGTCTTTCAG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAATGAGATTCTTCAATTCTGATTTCAAAGAAACATCAAGTTCCGAAAAGAGCTTCATTATTATAACTCCAAAAGAGAAAGATAAAATACAACTAGTTGACCATCTAGATGAAGAAAAAATAGAAAACAATTAAAAAGTAAGTGAAGGAGCAAGTATTACTCAAAAATCAATGACTACTAATAGATCCGAAGGATTGAATAAAATGAATGCATCATTTCTTAGAGCTCTAAAACGTGGATCTGGTTTTAAGAGGATCTAGAAACTTCTAAGATGTAATTCTACATGAAGATCACACCTATTGAAATCGATAAGATTATTCAAAGAGTCAACAAGCTTGAGAGTTAAAACATTTGGTCTATCCATAAGTTTGTGATAAATTGGGTTAATTGGTTCATTTTTTATTTTTTCATTATCTTTATCTTTAAGAATTGGAAATTTACAAATAACGTTGCTTTGTCTTTCATCGATAAAAGTATCACAAACTAGATTGCAAGATAAATAAACAAAATCTAGATTTTTATTACCTTCACCAGGTGAATGTCTTTCAGATCCTTCTAGTAACTGAAGAATACCATCAACTTTGACTACTGCAAGCTCATTTATTTTATTACTTGTAGGAAAATCAAAATAAAATGTTTTTTCATTAATTCTGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTATAGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGATTCTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATGATTTACTTCCTCAATCAATAAGAGGTTGTATTATTGGAAAGAGTGGATGTGGAAAGACTAATTTACTTATGAATTTGCTATTAGAAGAATACCTTGATTACAATAATTTATACATCTTTAGTACAACTTTATTTCAACCTTGTTATCAAGCATTAATTAATGGTTTCGAAAATGGATTAAGTAAAAAAAGAAAT</canonical>
            <polymorphic>ACAATGAGATTCTTCAATTCTGATTTCAAAGAAACATCAAGTTCCGAAAAGAGCTTCATTATTATAACTCCAAAAGAGAAAGATAAAATACAACTAGTTGACCATCTAGATGAAGAAAAAATAGAAAACAATTAAAAAGTAAGTGAAGGAGCAAGTATTACTCAAAAATCAATGACTACTAATAGATCCGAAGGATTGAATAAAATGAATGCATCATTTCTTAGAGCTCTAAAACGTGGATCTGGTTTTAAGAGGATCTAGAAACTTCTAAGATGTAATTCTACATGAAGATCACACCTATTGAAATCGATAAGATTATTCAAAGAGTCAACAAGCTTGAGAGTTAAAACATTTGGTCTATCCATAAGTTTGTGATAAATTGGGTTAATTGGTTCATTTTTTATTTTTTCATTATCTTTATCTTTAAGAATTGGAAATTTACAAATAACGTTGCTTTGTCTTTCATCGATAAAAGTATCACAAACTAGATTGCAAGATARATAAACAAAATCTAGATTTTTATTACCTTCACCAGGTGAATGTCTTTCAGATCCTTCTAGTAACTGAAGAATACCATCAACTTTGACTACTGCAAGCTCATTTATTTTATTACTTGTAGGAAAATCAAAATAAAATGTTTTTTCATTAATTCTGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTATAGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGATTCTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATGATTTACTTCCTCAATCAATAAGAGGTTGTATTATTGGAAAGAGTGGATGTGGAAAGACTAATTTACTTATGAATTTGCTATTAGAAGAATACCTTGATTACAATAATTTATACATCTTTAGTACAACTTTATTTCAACCTTGTTATCAAGCATTAATTAATGGTTTCGAAAATGGATTAAGTAAAAAAAGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGAGAGTTAAAACATTTGGTC</pcr_primer_p1>
		<pcr_primer_p2>CAAAGTTGATGGTATTCTTCAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTGAGAGTTAAAACATTTGGTCTATCCATAAGTTTGTGATAAATTGGGTTAATTGGTTCATTTTTTATTTTTTCATTATCTTTATCTTTAAGAATTGGAAATTTACAAATAACGTTGCTTTGTCTTTCATCGATAAAAGTATCACAAACTAGATTGCAAGATAAATAAACAAAATCTAGATTTTTATTACCTTCACCAGGTGAATGTCTTTCAGATCCTTCTAGTAACTGAAGAATACCATCAACTTTG</canonical_amplicon>
		<polymorphic_amplicon>CTTGAGAGTTAAAACATTTGGTCTATCCATAAGTTTGTGATAAATTGGGTTAATTGGTTCATTTTTTATTTTTTCATTATCTTTATCTTTAAGAATTGGAAATTTACAAATAACGTTGCTTTGTCTTTCATCGATAAAAGTATCACAAACTAGATTGCAAGATARATAAACAAAATCTAGATTTTTATTACCTTCACCAGGTGAATGTCTTTCAGATCCTTCTAGTAACTGAAGAATACCATCAACTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39044</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>772349</contig_pos>
        <strand></strand>
        <context>ttattttCTA[T/A]AGAATCTGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTA</left_flank>
        <right_flank>AGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATGAATGCATCATTTCTTAGAGCTCTAAAACGTGGATCTGGTTTTAAGAGGATCTAGAAACTTCTAAGATGTAATTCTACATGAAGATCACACCTATTGAAATCGATAAGATTATTCAAAGAGTCAACAAGCTTGAGAGTTAAAACATTTGGTCTATCCATAAGTTTGTGATAAATTGGGTTAATTGGTTCATTTTTTATTTTTTCATTATCTTTATCTTTAAGAATTGGAAATTTACAAATAACGTTGCTTTGTCTTTCATCGATAAAAGTATCACAAACTAGATTGCAAGATAAATAAACAAAATCTAGATTTTTATTACCTTCACCAGGTGAATGTCTTTCAGATCCTTCTAGTAACTGAAGAATACCATCAACTTTGACTACTGCAAGCTCATTTATTTTATTACTTGTAGGAAAATCAAAATAAAATGTTTTTTCATTAATTCTGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTATAGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGATTCTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATGATTTACTTCCTCAATCAATAAGAGGTTGTATTATTGGAAAGAGTGGATGTGGAAAGACTAATTTACTTATGAATTTGCTATTAGAAGAATACCTTGATTACAATAATTTATACATCTTTAGTACAACTTTATTTCAACCTTGTTATCAAGCATTAATTAATGGTTTCGAAAATGGATTAAGTAAAAAAAGAAATTAGGAGGTGTTTTGAAAAGCAAGGCTTCATAATTGAAGAAAAGGAAAATCCCCAAAGAATTATTAAAGTGTTTACATCTGACAAAATAGAAGATATTCCAGATCCTAGTTCAATTGATCCCAATAAGAAGACTCTAATAATTTTTGACGATCTTTTATTAGAAAAACAAAATAAAATAGAACAATATTATACTAGAGGAAGAC</canonical>
            <polymorphic>AATGAATGCATCATTTCTTAGAGCTCTAAAACGTGGATCTGGTTTTAAGAGGATCTAGAAACTTCTAAGATGTAATTCTACATGAAGATCACACCTATTGAAATCGATAAGATTATTCAAAGAGTCAACAAGCTTGAGAGTTAAAACATTTGGTCTATCCATAAGTTTGTGATAAATTGGGTTAATTGGTTCATTTTTTATTTTTTCATTATCTTTATCTTTAAGAATTGGAAATTTACAAATAACGTTGCTTTGTCTTTCATCGATAAAAGTATCACAAACTAGATTGCAAGATAAATAAACAAAATCTAGATTTTTATTACCTTCACCAGGTGAATGTCTTTCAGATCCTTCTAGTAACTGAAGAATACCATCAACTTTGACTACTGCAAGCTCATTTATTTTATTACTTGTAGGAAAATCAAAATAAAATGTTTTTTCATTAATTCTGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTAWAGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGATTCTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATGATTTACTTCCTCAATCAATAAGAGGTTGTATTATTGGAAAGAGTGGATGTGGAAAGACTAATTTACTTATGAATTTGCTATTAGAAGAATACCTTGATTACAATAATTTATACATCTTTAGTACAACTTTATTTCAACCTTGTTATCAAGCATTAATTAATGGTTTCGAAAATGGATTAAGTAAAAAAAGAAATTAGGAGGTGTTTTGAAAAGCAAGGCTTCATAATTGAAGAAAAGGAAAATCCCCAAAGAATTATTAAAGTGTTTACATCTGACAAAATAGAAGATATTCCAGATCCTAGTTCAATTGATCCCAATAAGAAGACTCTAATAATTTTTGACGATCTTTTATTAGAAAAACAAAATAAAATAGAACAATATTATACTAGAGGAAGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTACTGCAAGCTCATTTATTT</pcr_primer_p1>
		<pcr_primer_p2>AACCTCTTATTGATTGAGGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GACTACTGCAAGCTCATTTATTTTATTACTTGTAGGAAAATCAAAATAAAATGTTTTTTCATTAATTCTGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTATAGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGATTCTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATGATTTACTTCCTCAATCAATAAGAGGTT</canonical_amplicon>
		<polymorphic_amplicon>GACTACTGCAAGCTCATTTATTTTATTACTTGTAGGAAAATCAAAATAAAATGTTTTTTCATTAATTCTGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTAWAGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGATTCTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATGATTTACTTCCTCAATCAATAAGAGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39045</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>772412</contig_pos>
        <strand></strand>
        <context>AATTTAATGA[T/C]TMTAGTGTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGA</left_flank>
        <right_flank>TCTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATGATTTACTTCC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTAAGATGTAATTCTACATGAAGATCACACCTATTGAAATCGATAAGATTATTCAAAGAGTCAACAAGCTTGAGAGTTAAAACATTTGGTCTATCCATAAGTTTGTGATAAATTGGGTTAATTGGTTCATTTTTTATTTTTTCATTATCTTTATCTTTAAGAATTGGAAATTTACAAATAACGTTGCTTTGTCTTTCATCGATAAAAGTATCACAAACTAGATTGCAAGATAAATAAACAAAATCTAGATTTTTATTACCTTCACCAGGTGAATGTCTTTCAGATCCTTCTAGTAACTGAAGAATACCATCAACTTTGACTACTGCAAGCTCATTTATTTTATTACTTGTAGGAAAATCAAAATAAAATGTTTTTTCATTAATTCTGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTATAGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGATTCTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATGATTTACTTCCTCAATCAATAAGAGGTTGTATTATTGGAAAGAGTGGATGTGGAAAGACTAATTTACTTATGAATTTGCTATTAGAAGAATACCTTGATTACAATAATTTATACATCTTTAGTACAACTTTATTTCAACCTTGTTATCAAGCATTAATTAATGGTTTCGAAAATGGATTAAGTAAAAAAAGAAATTAGGAGGTGTTTTGAAAAGCAAGGCTTCATAATTGAAGAAAAGGAAAATCCCCAAAGAATTATTAAAGTGTTTACATCTGACAAAATAGAAGATATTCCAGATCCTAGTTCAATTGATCCCAATAAGAAGACTCTAATAATTTTTGACGATCTTTTATTAGAAAAACAAAATAAAATAGAACAATATTATACTAGAGGAAGACATTCTTCCATTGATTGTTTTTACATTTCACAGAATTATATAAAGCTTCCAAAGAATACAATTA</canonical>
            <polymorphic>TCTAAGATGTAATTCTACATGAAGATCACACCTATTGAAATCGATAAGATTATTCAAAGAGTCAACAAGCTTGAGAGTTAAAACATTTGGTCTATCCATAAGTTTGTGATAAATTGGGTTAATTGGTTCATTTTTTATTTTTTCATTATCTTTATCTTTAAGAATTGGAAATTTACAAATAACGTTGCTTTGTCTTTCATCGATAAAAGTATCACAAACTAGATTGCAAGATAAATAAACAAAATCTAGATTTTTATTACCTTCACCAGGTGAATGTCTTTCAGATCCTTCTAGTAACTGAAGAATACCATCAACTTTGACTACTGCAAGCTCATTTATTTTATTACTTGTAGGAAAATCAAAATAAAATGTTTTTTCATTAATTCTGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTATAGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGAYTCTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATGATTTACTTCCTCAATCAATAAGAGGTTGTATTATTGGAAAGAGTGGATGTGGAAAGACTAATTTACTTATGAATTTGCTATTAGAAGAATACCTTGATTACAATAATTTATACATCTTTAGTACAACTTTATTTCAACCTTGTTATCAAGCATTAATTAATGGTTTCGAAAATGGATTAAGTAAAAAAAGAAATTAGGAGGTGTTTTGAAAAGCAAGGCTTCATAATTGAAGAAAAGGAAAATCCCCAAAGAATTATTAAAGTGTTTACATCTGACAAAATAGAAGATATTCCAGATCCTAGTTCAATTGATCCCAATAAGAAGACTCTAATAATTTTTGACGATCTTTTATTAGAAAAACAAAATAAAATAGAACAATATTATACTAGAGGAAGACATTCTTCCATTGATTGTTTTTACATTTCACAGAATTATATAAAGCTTCCAAAGAATACAATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 439 59</canonical_bands>
                <polymorphic_bands>561 439</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTACTGCAAGCTCATTTATTT</pcr_primer_p1>
		<pcr_primer_p2>AACCTCTTATTGATTGAGGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GACTACTGCAAGCTCATTTATTTTATTACTTGTAGGAAAATCAAAATAAAATGTTTTTTCATTAATTCTGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTATAGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGATTCTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATGATTTACTTCCTCAATCAATAAGAGGTT</canonical_amplicon>
		<polymorphic_amplicon>GACTACTGCAAGCTCATTTATTTTATTACTTGTAGGAAAATCAAAATAAAATGTTTTTTCATTAATTCTGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTATAGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGAYTCTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATGATTTACTTCCTCAATCAATAAGAGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39046</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>772414</contig_pos>
        <strand></strand>
        <context>TTTAATGAYT[C/A]TAGTGTCAAR</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>ATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGATT</left_flank>
        <right_flank>TAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATGATTTACTTCCTC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAGATGTAATTCTACATGAAGATCACACCTATTGAAATCGATAAGATTATTCAAAGAGTCAACAAGCTTGAGAGTTAAAACATTTGGTCTATCCATAAGTTTGTGATAAATTGGGTTAATTGGTTCATTTTTTATTTTTTCATTATCTTTATCTTTAAGAATTGGAAATTTACAAATAACGTTGCTTTGTCTTTCATCGATAAAAGTATCACAAACTAGATTGCAAGATAAATAAACAAAATCTAGATTTTTATTACCTTCACCAGGTGAATGTCTTTCAGATCCTTCTAGTAACTGAAGAATACCATCAACTTTGACTACTGCAAGCTCATTTATTTTATTACTTGTAGGAAAATCAAAATAAAATGTTTTTTCATTAATTCTGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTATAGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGATTCTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATGATTTACTTCCTCAATCAATAAGAGGTTGTATTATTGGAAAGAGTGGATGTGGAAAGACTAATTTACTTATGAATTTGCTATTAGAAGAATACCTTGATTACAATAATTTATACATCTTTAGTACAACTTTATTTCAACCTTGTTATCAAGCATTAATTAATGGTTTCGAAAATGGATTAAGTAAAAAAAGAAATTAGGAGGTGTTTTGAAAAGCAAGGCTTCATAATTGAAGAAAAGGAAAATCCCCAAAGAATTATTAAAGTGTTTACATCTGACAAAATAGAAGATATTCCAGATCCTAGTTCAATTGATCCCAATAAGAAGACTCTAATAATTTTTGACGATCTTTTATTAGAAAAACAAAATAAAATAGAACAATATTATACTAGAGGAAGACATTCTTCCATTGATTGTTTTTACATTTCACAGAATTATATAAAGCTTCCAAAGAATACAATTAGA</canonical>
            <polymorphic>TAAGATGTAATTCTACATGAAGATCACACCTATTGAAATCGATAAGATTATTCAAAGAGTCAACAAGCTTGAGAGTTAAAACATTTGGTCTATCCATAAGTTTGTGATAAATTGGGTTAATTGGTTCATTTTTTATTTTTTCATTATCTTTATCTTTAAGAATTGGAAATTTACAAATAACGTTGCTTTGTCTTTCATCGATAAAAGTATCACAAACTAGATTGCAAGATAAATAAACAAAATCTAGATTTTTATTACCTTCACCAGGTGAATGTCTTTCAGATCCTTCTAGTAACTGAAGAATACCATCAACTTTGACTACTGCAAGCTCATTTATTTTATTACTTGTAGGAAAATCAAAATAAAATGTTTTTTCATTAATTCTGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTATAGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGATTMTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATGATTTACTTCCTCAATCAATAAGAGGTTGTATTATTGGAAAGAGTGGATGTGGAAAGACTAATTTACTTATGAATTTGCTATTAGAAGAATACCTTGATTACAATAATTTATACATCTTTAGTACAACTTTATTTCAACCTTGTTATCAAGCATTAATTAATGGTTTCGAAAATGGATTAAGTAAAAAAAGAAATTAGGAGGTGTTTTGAAAAGCAAGGCTTCATAATTGAAGAAAAGGAAAATCCCCAAAGAATTATTAAAGTGTTTACATCTGACAAAATAGAAGATATTCCAGATCCTAGTTCAATTGATCCCAATAAGAAGACTCTAATAATTTTTGACGATCTTTTATTAGAAAAACAAAATAAAATAGAACAATATTATACTAGAGGAAGACATTCTTCCATTGATTGTTTTTACATTTCACAGAATTATATAAAGCTTCCAAAGAATACAATTAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>337 217 211 87 76 45 27</canonical_bands>
                <polymorphic_bands>548 217 87 76 45 27</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>380 366 138 59 57</canonical_bands>
                <polymorphic_bands>425 380 138 57</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>504 437 59</canonical_bands>
                <polymorphic_bands>563 437</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACTACTGCAAGCTCATTTATTT</pcr_primer_p1>
		<pcr_primer_p2>AACCTCTTATTGATTGAGGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GACTACTGCAAGCTCATTTATTTTATTACTTGTAGGAAAATCAAAATAAAATGTTTTTTCATTAATTCTGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTATAGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGATTCTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATGATTTACTTCCTCAATCAATAAGAGGTT</canonical_amplicon>
		<polymorphic_amplicon>GACTACTGCAAGCTCATTTATTTTATTACTTGTAGGAAAATCAAAATAAAATGTTTTTTCATTAATTCTGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTATAGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGATTMTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATGATTTACTTCCTCAATCAATAAGAGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39047</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>772424</contig_pos>
        <strand></strand>
        <context>MTAGTGTCAA[A/G]AATTATTATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGATTCTAGTGTCAA</left_flank>
        <right_flank>AATTATTATCCTGAAAGAAATAATAATGATTTACTTCCTCAATCAATAAG</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTACATGAAGATCACACCTATTGAAATCGATAAGATTATTCAAAGAGTCAACAAGCTTGAGAGTTAAAACATTTGGTCTATCCATAAGTTTGTGATAAATTGGGTTAATTGGTTCATTTTTTATTTTTTCATTATCTTTATCTTTAAGAATTGGAAATTTACAAATAACGTTGCTTTGTCTTTCATCGATAAAAGTATCACAAACTAGATTGCAAGATAAATAAACAAAATCTAGATTTTTATTACCTTCACCAGGTGAATGTCTTTCAGATCCTTCTAGTAACTGAAGAATACCATCAACTTTGACTACTGCAAGCTCATTTATTTTATTACTTGTAGGAAAATCAAAATAAAATGTTTTTTCATTAATTCTGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTATAGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGATTCTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATGATTTACTTCCTCAATCAATAAGAGGTTGTATTATTGGAAAGAGTGGATGTGGAAAGACTAATTTACTTATGAATTTGCTATTAGAAGAATACCTTGATTACAATAATTTATACATCTTTAGTACAACTTTATTTCAACCTTGTTATCAAGCATTAATTAATGGTTTCGAAAATGGATTAAGTAAAAAAAGAAATTAGGAGGTGTTTTGAAAAGCAAGGCTTCATAATTGAAGAAAAGGAAAATCCCCAAAGAATTATTAAAGTGTTTACATCTGACAAAATAGAAGATATTCCAGATCCTAGTTCAATTGATCCCAATAAGAAGACTCTAATAATTTTTGACGATCTTTTATTAGAAAAACAAAATAAAATAGAACAATATTATACTAGAGGAAGACATTCTTCCATTGATTGTTTTTACATTTCACAGAATTATATAAAGCTTCCAAAGAATACAATTAGAGAAAAGGCTA</canonical>
            <polymorphic>TTCTACATGAAGATCACACCTATTGAAATCGATAAGATTATTCAAAGAGTCAACAAGCTTGAGAGTTAAAACATTTGGTCTATCCATAAGTTTGTGATAAATTGGGTTAATTGGTTCATTTTTTATTTTTTCATTATCTTTATCTTTAAGAATTGGAAATTTACAAATAACGTTGCTTTGTCTTTCATCGATAAAAGTATCACAAACTAGATTGCAAGATAAATAAACAAAATCTAGATTTTTATTACCTTCACCAGGTGAATGTCTTTCAGATCCTTCTAGTAACTGAAGAATACCATCAACTTTGACTACTGCAAGCTCATTTATTTTATTACTTGTAGGAAAATCAAAATAAAATGTTTTTTCATTAATTCTGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTATAGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGATTCTAGTGTCAARAATTATTATCCTGAAAGAAATAATAATGATTTACTTCCTCAATCAATAAGAGGTTGTATTATTGGAAAGAGTGGATGTGGAAAGACTAATTTACTTATGAATTTGCTATTAGAAGAATACCTTGATTACAATAATTTATACATCTTTAGTACAACTTTATTTCAACCTTGTTATCAAGCATTAATTAATGGTTTCGAAAATGGATTAAGTAAAAAAAGAAATTAGGAGGTGTTTTGAAAAGCAAGGCTTCATAATTGAAGAAAAGGAAAATCCCCAAAGAATTATTAAAGTGTTTACATCTGACAAAATAGAAGATATTCCAGATCCTAGTTCAATTGATCCCAATAAGAAGACTCTAATAATTTTTGACGATCTTTTATTAGAAAAACAAAATAAAATAGAACAATATTATACTAGAGGAAGACATTCTTCCATTGATTGTTTTTACATTTCACAGAATTATATAAAGCTTCCAAAGAATACAATTAGAGAAAAGGCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTACTGCAAGCTCATTTATTT</pcr_primer_p1>
		<pcr_primer_p2>AACCTCTTATTGATTGAGGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GACTACTGCAAGCTCATTTATTTTATTACTTGTAGGAAAATCAAAATAAAATGTTTTTTCATTAATTCTGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTATAGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGATTCTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATGATTTACTTCCTCAATCAATAAGAGGTT</canonical_amplicon>
		<polymorphic_amplicon>GACTACTGCAAGCTCATTTATTTTATTACTTGTAGGAAAATCAAAATAAAATGTTTTTTCATTAATTCTGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTATAGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGATTCTAGTGTCAARAATTATTATCCTGAAAGAAATAATAATGATTTACTTCCTCAATCAATAAGAGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39048</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>772452</contig_pos>
        <strand></strand>
        <context>AAATAATAAT[G/C]MTTTACTTCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AATTTAATGATTCTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAAT</left_flank>
        <right_flank>ATTTACTTCCTCAATCAATAAGAGGTTGTATTATTGGAAAGAGTGGATGT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGATAAGATTATTCAAAGAGTCAACAAGCTTGAGAGTTAAAACATTTGGTCTATCCATAAGTTTGTGATAAATTGGGTTAATTGGTTCATTTTTTATTTTTTCATTATCTTTATCTTTAAGAATTGGAAATTTACAAATAACGTTGCTTTGTCTTTCATCGATAAAAGTATCACAAACTAGATTGCAAGATAAATAAACAAAATCTAGATTTTTATTACCTTCACCAGGTGAATGTCTTTCAGATCCTTCTAGTAACTGAAGAATACCATCAACTTTGACTACTGCAAGCTCATTTATTTTATTACTTGTAGGAAAATCAAAATAAAATGTTTTTTCATTAATTCTGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTATAGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGATTCTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATGATTTACTTCCTCAATCAATAAGAGGTTGTATTATTGGAAAGAGTGGATGTGGAAAGACTAATTTACTTATGAATTTGCTATTAGAAGAATACCTTGATTACAATAATTTATACATCTTTAGTACAACTTTATTTCAACCTTGTTATCAAGCATTAATTAATGGTTTCGAAAATGGATTAAGTAAAAAAAGAAATTAGGAGGTGTTTTGAAAAGCAAGGCTTCATAATTGAAGAAAAGGAAAATCCCCAAAGAATTATTAAAGTGTTTACATCTGACAAAATAGAAGATATTCCAGATCCTAGTTCAATTGATCCCAATAAGAAGACTCTAATAATTTTTGACGATCTTTTATTAGAAAAACAAAATAAAATAGAACAATATTATACTAGAGGAAGACATTCTTCCATTGATTGTTTTTACATTTCACAGAATTATATAAAGCTTCCAAAGAATACAATTAGAGAAAAGGCTAACTTCTTTATAATATTTCCGCAAGATAA</canonical>
            <polymorphic>TCGATAAGATTATTCAAAGAGTCAACAAGCTTGAGAGTTAAAACATTTGGTCTATCCATAAGTTTGTGATAAATTGGGTTAATTGGTTCATTTTTTATTTTTTCATTATCTTTATCTTTAAGAATTGGAAATTTACAAATAACGTTGCTTTGTCTTTCATCGATAAAAGTATCACAAACTAGATTGCAAGATAAATAAACAAAATCTAGATTTTTATTACCTTCACCAGGTGAATGTCTTTCAGATCCTTCTAGTAACTGAAGAATACCATCAACTTTGACTACTGCAAGCTCATTTATTTTATTACTTGTAGGAAAATCAAAATAAAATGTTTTTTCATTAATTCTGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTATAGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGATTCTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATSATTTACTTCCTCAATCAATAAGAGGTTGTATTATTGGAAAGAGTGGATGTGGAAAGACTAATTTACTTATGAATTTGCTATTAGAAGAATACCTTGATTACAATAATTTATACATCTTTAGTACAACTTTATTTCAACCTTGTTATCAAGCATTAATTAATGGTTTCGAAAATGGATTAAGTAAAAAAAGAAATTAGGAGGTGTTTTGAAAAGCAAGGCTTCATAATTGAAGAAAAGGAAAATCCCCAAAGAATTATTAAAGTGTTTACATCTGACAAAATAGAAGATATTCCAGATCCTAGTTCAATTGATCCCAATAAGAAGACTCTAATAATTTTTGACGATCTTTTATTAGAAAAACAAAATAAAATAGAACAATATTATACTAGAGGAAGACATTCTTCCATTGATTGTTTTTACATTTCACAGAATTATATAAAGCTTCCAAAGAATACAATTAGAGAAAAGGCTAACTTCTTTATAATATTTCCGCAAGATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTGTGCAAATTGAGAAATAAT</pcr_primer_p1>
		<pcr_primer_p2>GGTATTCTTCTAATAGCAAATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTATAGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGATTCTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATGATTTACTTCCTCAATCAATAAGAGGTTGTATTATTGGAAAGAGTGGATGTGGAAAGACTAATTTACTTATGAATTTGCTATTAGAAGAATACC</canonical_amplicon>
		<polymorphic_amplicon>TTCTGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTATAGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGATTCTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATSATTTACTTCCTCAATCAATAAGAGGTTGTATTATTGGAAAGAGTGGATGTGGAAAGACTAATTTACTTATGAATTTGCTATTAGAAGAATACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39049</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>772453</contig_pos>
        <strand></strand>
        <context>AATAATAATS[A/C]TTTACTTCCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTAATGATTCTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATG</left_flank>
        <right_flank>TTTACTTCCTCAATCAATAAGAGGTTGTATTATTGGAAAGAGTGGATGTG</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATAAGATTATTCAAAGAGTCAACAAGCTTGAGAGTTAAAACATTTGGTCTATCCATAAGTTTGTGATAAATTGGGTTAATTGGTTCATTTTTTATTTTTTCATTATCTTTATCTTTAAGAATTGGAAATTTACAAATAACGTTGCTTTGTCTTTCATCGATAAAAGTATCACAAACTAGATTGCAAGATAAATAAACAAAATCTAGATTTTTATTACCTTCACCAGGTGAATGTCTTTCAGATCCTTCTAGTAACTGAAGAATACCATCAACTTTGACTACTGCAAGCTCATTTATTTTATTACTTGTAGGAAAATCAAAATAAAATGTTTTTTCATTAATTCTGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTATAGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGATTCTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATGATTTACTTCCTCAATCAATAAGAGGTTGTATTATTGGAAAGAGTGGATGTGGAAAGACTAATTTACTTATGAATTTGCTATTAGAAGAATACCTTGATTACAATAATTTATACATCTTTAGTACAACTTTATTTCAACCTTGTTATCAAGCATTAATTAATGGTTTCGAAAATGGATTAAGTAAAAAAAGAAATTAGGAGGTGTTTTGAAAAGCAAGGCTTCATAATTGAAGAAAAGGAAAATCCCCAAAGAATTATTAAAGTGTTTACATCTGACAAAATAGAAGATATTCCAGATCCTAGTTCAATTGATCCCAATAAGAAGACTCTAATAATTTTTGACGATCTTTTATTAGAAAAACAAAATAAAATAGAACAATATTATACTAGAGGAAGACATTCTTCCATTGATTGTTTTTACATTTCACAGAATTATATAAAGCTTCCAAAGAATACAATTAGAGAAAAGGCTAACTTCTTTATAATATTTCCGCAAGATAAG</canonical>
            <polymorphic>CGATAAGATTATTCAAAGAGTCAACAAGCTTGAGAGTTAAAACATTTGGTCTATCCATAAGTTTGTGATAAATTGGGTTAATTGGTTCATTTTTTATTTTTTCATTATCTTTATCTTTAAGAATTGGAAATTTACAAATAACGTTGCTTTGTCTTTCATCGATAAAAGTATCACAAACTAGATTGCAAGATAAATAAACAAAATCTAGATTTTTATTACCTTCACCAGGTGAATGTCTTTCAGATCCTTCTAGTAACTGAAGAATACCATCAACTTTGACTACTGCAAGCTCATTTATTTTATTACTTGTAGGAAAATCAAAATAAAATGTTTTTTCATTAATTCTGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTATAGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGATTCTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATGMTTTACTTCCTCAATCAATAAGAGGTTGTATTATTGGAAAGAGTGGATGTGGAAAGACTAATTTACTTATGAATTTGCTATTAGAAGAATACCTTGATTACAATAATTTATACATCTTTAGTACAACTTTATTTCAACCTTGTTATCAAGCATTAATTAATGGTTTCGAAAATGGATTAAGTAAAAAAAGAAATTAGGAGGTGTTTTGAAAAGCAAGGCTTCATAATTGAAGAAAAGGAAAATCCCCAAAGAATTATTAAAGTGTTTACATCTGACAAAATAGAAGATATTCCAGATCCTAGTTCAATTGATCCCAATAAGAAGACTCTAATAATTTTTGACGATCTTTTATTAGAAAAACAAAATAAAATAGAACAATATTATACTAGAGGAAGACATTCTTCCATTGATTGTTTTTACATTTCACAGAATTATATAAAGCTTCCAAAGAATACAATTAGAGAAAAGGCTAACTTCTTTATAATATTTCCGCAAGATAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTGTGCAAATTGAGAAATAAT</pcr_primer_p1>
		<pcr_primer_p2>GGTATTCTTCTAATAGCAAATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTATAGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGATTCTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATGATTTACTTCCTCAATCAATAAGAGGTTGTATTATTGGAAAGAGTGGATGTGGAAAGACTAATTTACTTATGAATTTGCTATTAGAAGAATACC</canonical_amplicon>
		<polymorphic_amplicon>TTCTGTGCAAATTGAGAAATAATGTTGTCATTTAAATAAAAAATTATTTTCTATAGAATCTGTAAGACATTCACTTAGTGAAGAAGAATGACTTTCTCAAATAGTGAATTTAATGATTCTAGTGTCAAAAATTATTATCCTGAAAGAAATAATAATGMTTTACTTCCTCAATCAATAAGAGGTTGTATTATTGGAAAGAGTGGATGTGGAAAGACTAATTTACTTATGAATTTGCTATTAGAAGAATACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39050</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>773819</contig_pos>
        <strand>+</strand>
        <context>AATGATGCGA[A/G]AAAAGAAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAGAAATAGATTTCTCAGAAATCAGTGTTTATACCAAAAATGATGCGA</left_flank>
        <right_flank>AAAAGAAACAGCTCAAATGTATTTAGATCTTTAGAACAAATGATTCACGC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATTTCTATTTTTTTCAATTTTACAACTTTCTGGGTTTTCAAAATTTCAAAAATTTTTGTGAATTTTCTGATTATTTTATTTAGATAATCTACACTACATCCGATGTCTCTACAGAATTTAGTTTTCTTGACATAAACATTTTTATTTTTGTAATCATTCCAGGCATCGAATATTTTTCTATTAGTCATTTATATCATAAAATTTTTTTCAATAGATTGTAATGAATATTAATGGATACTAATGAATTTAAATGGATACTGATGAATATAAATTAATTATTATAGATAATAATGGATAAGTAAATACCTTTGTAAATATTACCTTGAAAAAATTAGATATACTCATTTGAAGAATGCTTTGGATTTATAATCCTATATAAATGGATAAATCTCAAAATCAAATTAAATTGTCTGCTTTCATCCAAGAAGTTCAAAAAGTTGATGGTAAAAAAGAAATAGATTTCTCAGAAATCAGTGTTTATACCAAAAATGATGCGAGAAAAGAAACAGCTCAAATGTATTTAGATCTTTAGAACAAATGATTCACGCAATAGATGGATGTAAGATGTCTCAAAGTGATAAATTTGCTTATAAATATGGTTTCACTAAATTATTAACATCAAAATGTGAGAGTGAATGCAAGTCTATTATTATTAATACACTTGGATTATCGAACAAGAAATATAAATTAATGTTAGAACAGATGCATTCAGATTTTCAAAAAGAAAGAGATGAACACAATGAGCTTAGAAAGAAGTATAATGAAAAACAAAAGGAACAAATAGTAGAAGTACCTTGATCTTTCTCTTACTCTAAAGAATAAGAAAATTTTAAAAAATCGAGAATACCTAGATTTTCTCAATGATCTAGATATAGATGATACACTTAGTGATAAGTTTAAAAGAGTTGGTGTTTCTAAAGAATTTCCAAATGTTTCAAGAGCATATGTAAAAAAAGGTAAAGGGTCAGAAAATACTATAATCCAGAAATCAAAGTAAT</canonical>
            <polymorphic>CTATTTCTATTTTTTTCAATTTTACAACTTTCTGGGTTTTCAAAATTTCAAAAATTTTTGTGAATTTTCTGATTATTTTATTTAGATAATCTACACTACATCCGATGTCTCTACAGAATTTAGTTTTCTTGACATAAACATTTTTATTTTTGTAATCATTCCAGGCATCGAATATTTTTCTATTAGTCATTTATATCATAAAATTTTTTTCAATAGATTGTAATGAATATTAATGGATACTAATGAATTTAAATGGATACTGATGAATATAAATTAATTATTATAGATAATAATGGATAAGTAAATACCTTTGTAAATATTACCTTGAAAAAATTAGATATACTCATTTGAAGAATGCTTTGGATTTATAATCCTATATAAATGGATAAATCTCAAAATCAAATTAAATTGTCTGCTTTCATCCAAGAAGTTCAAAAAGTTGATGGTAAAAAAGAAATAGATTTCTCAGAAATCAGTGTTTATACCAAAAATGATGCGARAAAAGAAACAGCTCAAATGTATTTAGATCTTTAGAACAAATGATTCACGCAATAGATGGATGTAAGATGTCTCAAAGTGATAAATTTGCTTATAAATATGGTTTCACTAAATTATTAACATCAAAATGTGAGAGTGAATGCAAGTCTATTATTATTAATACACTTGGATTATCGAACAAGAAATATAAATTAATGTTAGAACAGATGCATTCAGATTTTCAAAAAGAAAGAGATGAACACAATGAGCTTAGAAAGAAGTATAATGAAAAACAAAAGGAACAAATAGTAGAAGTACCTTGATCTTTCTCTTACTCTAAAGAATAAGAAAATTTTAAAAAATCGAGAATACCTAGATTTTCTCAATGATCTAGATATAGATGATACACTTAGTGATAAGTTTAAAAGAGTTGGTGTTTCTAAAGAATTTCCAAATGTTTCAAGAGCATATGTAAAAAAAGGTAAAGGGTCAGAAAATACTATAATCCAGAAATCAAAGTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAATTAAATTGTCTGCTTTCAT</pcr_primer_p1>
		<pcr_primer_p2>AATAGACTTGCATTCACTCTCAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CAAATTAAATTGTCTGCTTTCATCCAAGAAGTTCAAAAAGTTGATGGTAAAAAAGAAATAGATTTCTCAGAAATCAGTGTTTATACCAAAAATGATGCGAGAAAAGAAACAGCTCAAATGTATTTAGATCTTTAGAACAAATGATTCACGCAATAGATGGATGTAAGATGTCTCAAAGTGATAAATTTGCTTATAAATATGGTTTCACTAAATTATTAACATCAAAATGTGAGAGTGAATGCAAGTCTATT</canonical_amplicon>
		<polymorphic_amplicon>CAAATTAAATTGTCTGCTTTCATCCAAGAAGTTCAAAAAGTTGATGGTAAAAAAGAAATAGATTTCTCAGAAATCAGTGTTTATACCAAAAATGATGCGARAAAAGAAACAGCTCAAATGTATTTAGATCTTTAGAACAAATGATTCACGCAATAGATGGATGTAAGATGTCTCAAAGTGATAAATTTGCTTATAAATATGGTTTCACTAAATTATTAACATCAAAATGTGAGAGTGAATGCAAGTCTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39051</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>775917</contig_pos>
        <strand></strand>
        <context>TGTCTGAAAA[C/A]TGAATGTGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GATGAGAAACCGGTGGATCGGTAAGCCTGGAGATTCGAATTGTCTGAAAA</left_flank>
        <right_flank>TGAATGTGATGATGGTTACTTCCGGTTTTGAACTTTTTAAATTCACTCAC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAATATAAAAAAAATTCTAGCTCTGTTTTTGAAATGAAGGTGTACCATATCTCTTTTACAAACTGTTAAATTAAGGTAACTAAAAAAACGTCTGAATTTGCAATATACTGCAAATTTTTCCTATTGTTATATGATCAACTATAATAATTAGAAACTGGGGTTTCATCATGAAAACTACATTTCAGATGTTTTTTTCTTTCATCAGTCAGTTCACAAAAGGTTTTATTGAAATATATCCGTATTAATAATCATAGCAAAAATTGAACCGAATTAACATTACAAGCATCAAGGAAGATTTTGATTTAAAGATTAACCAATGGGATGAGCGAATAGGGGGGGGGGGGGGGGGAATATAAATAACGATGAATAAAAAGAAAAAGTAAGAGGTGAAATATTAAAGCATTTCTAAATCTAAAAAACATATCACTTTGAGAATGTCTTTGGTGGATGAGAAACCGGTGGATCGGTAAGCCTGGAGATTCGAATTGTCTGAAAACTGAATGTGATGATGGTTACTTCCGGTTTTGAACTTTTTAAATTCACTCACTTTGATTATGCGTCTGTAGAAGACCCTTGAGAAGATCCGTTCGTCGACGGTATACTTTTTTGATAATTAGGACTTTCCGGGGTTTCAATTTGCAAAAGTTCAAAAACTGTTTTCCACCTCTTAACATCACAAGGTTGAATATCTTGTAATGCAGATTTAAGTTTAAATTGATCTTCTTGATTAAGTACTGGAATCTTGACACCAGCCGCATCCCATCGTTTTCGAGTTTCATACCAATAGAACATCTTCTGGGTCATTCTCTCTCCGGGCTTCGGATATACATTTGTTTTGTAGTATGGTGTCAAGAAGTCTGTTGGAGCATAATCATACTCATCGGCAAAAGAGGATAACTCGTGAACAGCTTTTATTGTGTTGTTTCTATTGAATGGCTGAAAAAATAAATTAAATGATTCCATTGTTGATTTAAAAAAAAAAAAAACTAACCGCTGT</canonical>
            <polymorphic>AAAAAATATAAAAAAAATTCTAGCTCTGTTTTTGAAATGAAGGTGTACCATATCTCTTTTACAAACTGTTAAATTAAGGTAACTAAAAAAACGTCTGAATTTGCAATATACTGCAAATTTTTCCTATTGTTATATGATCAACTATAATAATTAGAAACTGGGGTTTCATCATGAAAACTACATTTCAGATGTTTTTTTCTTTCATCAGTCAGTTCACAAAAGGTTTTATTGAAATATATCCGTATTAATAATCATAGCAAAAATTGAACCGAATTAACATTACAAGCATCAAGGAAGATTTTGATTTAAAGATTAACCAATGGGATGAGCGAATAGGGGGGGGGGGGGGGGGAATATAAATAACGATGAATAAAAAGAAAAAGTAAGAGGTGAAATATTAAAGCATTTCTAAATCTAAAAAACATATCACTTTGAGAATGTCTTTGGTGGATGAGAAACCGGTGGATCGGTAAGCCTGGAGATTCGAATTGTCTGAAAAMTGAATGTGATGATGGTTACTTCCGGTTTTGAACTTTTTAAATTCACTCACTTTGATTATGCGTCTGTAGAAGACCCTTGAGAAGATCCGTTCGTCGACGGTATACTTTTTTGATAATTAGGACTTTCCGGGGTTTCAATTTGCAAAAGTTCAAAAACTGTTTTCCACCTCTTAACATCACAAGGTTGAATATCTTGTAATGCAGATTTAAGTTTAAATTGATCTTCTTGATTAAGTACTGGAATCTTGACACCAGCCGCATCCCATCGTTTTCGAGTTTCATACCAATAGAACATCTTCTGGGTCATTCTCTCTCCGGGCTTCGGATATACATTTGTTTTGTAGTATGGTGTCAAGAAGTCTGTTGGAGCATAATCATACTCATCGGCAAAAGAGGATAACTCGTGAACAGCTTTTATTGTGTTGTTTCTATTGAATGGCTGAAAAAATAAATTAAATGATTCCATTGTTGATTTAAAAAAAAAAAAAACTAACCGCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGGGAATATAAATAACGATGAAT</pcr_primer_p1>
		<pcr_primer_p2>ATCTTCTCAAGGGTCTTCTACAG</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>GGGGAATATAAATAACGATGAATAAAAAGAAAAAGTAAGAGGTGAAATATTAAAGCATTTCTAAATCTAAAAAACATATCACTTTGAGAATGTCTTTGGTGGATGAGAAACCGGTGGATCGGTAAGCCTGGAGATTCGAATTGTCTGAAAACTGAATGTGATGATGGTTACTTCCGGTTTTGAACTTTTTAAATTCACTCACTTTGATTATGCGTCTGTAGAAGACCCTTGAGAAGAT</canonical_amplicon>
		<polymorphic_amplicon>GGGGAATATAAATAACGATGAATAAAAAGAAAAAGTAAGAGGTGAAATATTAAAGCATTTCTAAATCTAAAAAACATATCACTTTGAGAATGTCTTTGGTGGATGAGAAACCGGTGGATCGGTAAGCCTGGAGATTCGAATTGTCTGAAAAMTGAATGTGATGATGGTTACTTCCGGTTTTGAACTTTTTAAATTCACTCACTTTGATTATGCGTCTGTAGAAGACCCTTGAGAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39052</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>872132</contig_pos>
        <strand>+</strand>
        <context>TGTTTGCATT[G/T]TTGCACTGGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATCTGATTCCAAAGTGTTTCTCAAGTCATGTTATTTGAATGTTTGCATT</left_flank>
        <right_flank>TTGCACTGGCTGTACAATCATATCTCTCAAAATTGGATAATATCACATAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAATAATTTTAAATTTATTTTTTAAGGTTTACTGCTGCAATGCTTGCAAAATGTTTTTCCGTCGAGTCACCACATTCAAAAGTTCTTTGATCAATGTGAAAATGGAGATAATTGCTATAAAAATCCAGACGAAATCGCAAACTACGATTGCAGAATTTGTCGTTTTCAACAATGTCTTCGGGCTGAAATGATTCAGAAGCTGGATAAACTGGAACTTTCCGATACTATAGAAAATCTTTGTCGAATGGAAATGGAAAAATGGAACTTATTTGTAAACTTCCGAGCACCGGATAACATAACTTTTGAGGATGTCACTGATTCTACAGAAACTCAATTCACTAAAAAATCTCCGATTACTAAGAACACTTATCACGACTGGGAGTTTATAAACCATGTTGTAACAATTGACTTTATCAAGAAGCTCGATTTTGTGAAACTTCTGACGTCATCTGATTCCAAAGTGTTTCTCAAGTCATGTTATTTGAATGTTTGCATTGTTGCACTGGCTGTACAATCATATCTCTCAAAATTGGATAATATCACATACCCAGAAGGTTGCCCCGTTTTCCCAGATGAAATGAATATTACCACAAGCAAGTGTCCAAAAGTGGAGAACAGAATCAAATGCAGAGTTATTGGAAAATTGCGAGAACTCAATATCACTAAAGAGGAATTCCTACTTCTCAATATAATATTTATTTGTAATCCAGGTATGAAAATATGGCCAAAAAAATTGATTTTCAACAAATTCAAATTTTCCAGATGTCCCAAACATGTCGGAAACGGGTCGTTTACTTTTGAATTGTTATCAACGAATGTATGGTTCTCTCCTTTTGAAATACTGTCAAGTCACCTATCAGAAGCATGCTCCCACTCGTTACACAGATCTTCTATCCATATGTAACGTCATCTCAAAAACTCGGCAAGATATTAATTCTGTGGCTATATTATTCCAAATCTATCAGCCCGCAATGGAATGGAAACAAATGATAAGAGG</canonical>
            <polymorphic>AAAAAATAATTTTAAATTTATTTTTTAAGGTTTACTGCTGCAATGCTTGCAAAATGTTTTTCCGTCGAGTCACCACATTCAAAAGTTCTTTGATCAATGTGAAAATGGAGATAATTGCTATAAAAATCCAGACGAAATCGCAAACTACGATTGCAGAATTTGTCGTTTTCAACAATGTCTTCGGGCTGAAATGATTCAGAAGCTGGATAAACTGGAACTTTCCGATACTATAGAAAATCTTTGTCGAATGGAAATGGAAAAATGGAACTTATTTGTAAACTTCCGAGCACCGGATAACATAACTTTTGAGGATGTCACTGATTCTACAGAAACTCAATTCACTAAAAAATCTCCGATTACTAAGAACACTTATCACGACTGGGAGTTTATAAACCATGTTGTAACAATTGACTTTATCAAGAAGCTCGATTTTGTGAAACTTCTGACGTCATCTGATTCCAAAGTGTTTCTCAAGTCATGTTATTTGAATGTTTGCATTKTTGCACTGGCTGTACAATCATATCTCTCAAAATTGGATAATATCACATACCCAGAAGGTTGCCCCGTTTTCCCAGATGAAATGAATATTACCACAAGCAAGTGTCCAAAAGTGGAGAACAGAATCAAATGCAGAGTTATTGGAAAATTGCGAGAACTCAATATCACTAAAGAGGAATTCCTACTTCTCAATATAATATTTATTTGTAATCCAGGTATGAAAATATGGCCAAAAAAATTGATTTTCAACAAATTCAAATTTTCCAGATGTCCCAAACATGTCGGAAACGGGTCGTTTACTTTTGAATTGTTATCAACGAATGTATGGTTCTCTCCTTTTGAAATACTGTCAAGTCACCTATCAGAAGCATGCTCCCACTCGTTACACAGATCTTCTATCCATATGTAACGTCATCTCAAAAACTCGGCAAGATATTAATTCTGTGGCTATATTATTCCAAATCTATCAGCCCGCAATGGAATGGAAACAAATGATAAGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACCATGTTGTAACAATTGACT</pcr_primer_p1>
		<pcr_primer_p2>AATAACTCTGCATTTGATTCTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACCATGTTGTAACAATTGACTTTATCAAGAAGCTCGATTTTGTGAAACTTCTGACGTCATCTGATTCCAAAGTGTTTCTCAAGTCATGTTATTTGAATGTTTGCATTGTTGCACTGGCTGTACAATCATATCTCTCAAAATTGGATAATATCACATACCCAGAAGGTTGCCCCGTTTTCCCAGATGAAATGAATATTACCACAAGCAAGTGTCCAAAAGTGGAGAACAGAATCAAATGCAGAGTTATT</canonical_amplicon>
		<polymorphic_amplicon>AAACCATGTTGTAACAATTGACTTTATCAAGAAGCTCGATTTTGTGAAACTTCTGACGTCATCTGATTCCAAAGTGTTTCTCAAGTCATGTTATTTGAATGTTTGCATTKTTGCACTGGCTGTACAATCATATCTCTCAAAATTGGATAATATCACATACCCAGAAGGTTGCCCCGTTTTCCCAGATGAAATGAATATTACCACAAGCAAGTGTCCAAAAGTGGAGAACAGAATCAAATGCAGAGTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39053</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>872189</contig_pos>
        <strand>+</strand>
        <context>ATACCCAGAA[C/G]GTTGCCCCGT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGGCTGTACAATCATATCTCTCAAAATTGGATAATATCACATACCCAGAA</left_flank>
        <right_flank>GTTGCCCCGTTTTCCCAGATGAAATGAATATTACCACAAGCAAGTGTCCA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCCGTCGAGTCACCACATTCAAAAGTTCTTTGATCAATGTGAAAATGGAGATAATTGCTATAAAAATCCAGACGAAATCGCAAACTACGATTGCAGAATTTGTCGTTTTCAACAATGTCTTCGGGCTGAAATGATTCAGAAGCTGGATAAACTGGAACTTTCCGATACTATAGAAAATCTTTGTCGAATGGAAATGGAAAAATGGAACTTATTTGTAAACTTCCGAGCACCGGATAACATAACTTTTGAGGATGTCACTGATTCTACAGAAACTCAATTCACTAAAAAATCTCCGATTACTAAGAACACTTATCACGACTGGGAGTTTATAAACCATGTTGTAACAATTGACTTTATCAAGAAGCTCGATTTTGTGAAACTTCTGACGTCATCTGATTCCAAAGTGTTTCTCAAGTCATGTTATTTGAATGTTTGCATTGTTGCACTGGCTGTACAATCATATCTCTCAAAATTGGATAATATCACATACCCAGAAGGTTGCCCCGTTTTCCCAGATGAAATGAATATTACCACAAGCAAGTGTCCAAAAGTGGAGAACAGAATCAAATGCAGAGTTATTGGAAAATTGCGAGAACTCAATATCACTAAAGAGGAATTCCTACTTCTCAATATAATATTTATTTGTAATCCAGGTATGAAAATATGGCCAAAAAAATTGATTTTCAACAAATTCAAATTTTCCAGATGTCCCAAACATGTCGGAAACGGGTCGTTTACTTTTGAATTGTTATCAACGAATGTATGGTTCTCTCCTTTTGAAATACTGTCAAGTCACCTATCAGAAGCATGCTCCCACTCGTTACACAGATCTTCTATCCATATGTAACGTCATCTCAAAAACTCGGCAAGATATTAATTCTGTGGCTATATTATTCCAAATCTATCAGCCCGCAATGGAATGGAAACAAATGATAAGAGGAGCGATAGATTATCATTCCAAGTGAACACATATTGTCTGTTTCATTTCAACTCACTA</canonical>
            <polymorphic>TTTTCCGTCGAGTCACCACATTCAAAAGTTCTTTGATCAATGTGAAAATGGAGATAATTGCTATAAAAATCCAGACGAAATCGCAAACTACGATTGCAGAATTTGTCGTTTTCAACAATGTCTTCGGGCTGAAATGATTCAGAAGCTGGATAAACTGGAACTTTCCGATACTATAGAAAATCTTTGTCGAATGGAAATGGAAAAATGGAACTTATTTGTAAACTTCCGAGCACCGGATAACATAACTTTTGAGGATGTCACTGATTCTACAGAAACTCAATTCACTAAAAAATCTCCGATTACTAAGAACACTTATCACGACTGGGAGTTTATAAACCATGTTGTAACAATTGACTTTATCAAGAAGCTCGATTTTGTGAAACTTCTGACGTCATCTGATTCCAAAGTGTTTCTCAAGTCATGTTATTTGAATGTTTGCATTGTTGCACTGGCTGTACAATCATATCTCTCAAAATTGGATAATATCACATACCCAGAASGTTGCCCCGTTTTCCCAGATGAAATGAATATTACCACAAGCAAGTGTCCAAAAGTGGAGAACAGAATCAAATGCAGAGTTATTGGAAAATTGCGAGAACTCAATATCACTAAAGAGGAATTCCTACTTCTCAATATAATATTTATTTGTAATCCAGGTATGAAAATATGGCCAAAAAAATTGATTTTCAACAAATTCAAATTTTCCAGATGTCCCAAACATGTCGGAAACGGGTCGTTTACTTTTGAATTGTTATCAACGAATGTATGGTTCTCTCCTTTTGAAATACTGTCAAGTCACCTATCAGAAGCATGCTCCCACTCGTTACACAGATCTTCTATCCATATGTAACGTCATCTCAAAAACTCGGCAAGATATTAATTCTGTGGCTATATTATTCCAAATCTATCAGCCCGCAATGGAATGGAAACAAATGATAAGAGGAGCGATAGATTATCATTCCAAGTGAACACATATTGTCTGTTTCATTTCAACTCACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAACCATGTTGTAACAATTGACT</pcr_primer_p1>
		<pcr_primer_p2>AATAACTCTGCATTTGATTCTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAACCATGTTGTAACAATTGACTTTATCAAGAAGCTCGATTTTGTGAAACTTCTGACGTCATCTGATTCCAAAGTGTTTCTCAAGTCATGTTATTTGAATGTTTGCATTGTTGCACTGGCTGTACAATCATATCTCTCAAAATTGGATAATATCACATACCCAGAAGGTTGCCCCGTTTTCCCAGATGAAATGAATATTACCACAAGCAAGTGTCCAAAAGTGGAGAACAGAATCAAATGCAGAGTTATT</canonical_amplicon>
		<polymorphic_amplicon>AAACCATGTTGTAACAATTGACTTTATCAAGAAGCTCGATTTTGTGAAACTTCTGACGTCATCTGATTCCAAAGTGTTTCTCAAGTCATGTTATTTGAATGTTTGCATTGTTGCACTGGCTGTACAATCATATCTCTCAAAATTGGATAATATCACATACCCAGAASGTTGCCCCGTTTTCCCAGATGAAATGAATATTACCACAAGCAAGTGTCCAAAAGTGGAGAACAGAATCAAATGCAGAGTTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39054</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>872223</contig_pos>
        <strand>+</strand>
        <context>ATGAATATTA[C/T]CACAAGCAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TATCACATACCCAGAAGGTTGCCCCGTTTTCCCAGATGAAATGAATATTA</left_flank>
        <right_flank>CACAAGCAAGTGTCCAAAAGTGGAGAACAGAATCAAATGCAGAGTTATTG</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCAATGTGAAAATGGAGATAATTGCTATAAAAATCCAGACGAAATCGCAAACTACGATTGCAGAATTTGTCGTTTTCAACAATGTCTTCGGGCTGAAATGATTCAGAAGCTGGATAAACTGGAACTTTCCGATACTATAGAAAATCTTTGTCGAATGGAAATGGAAAAATGGAACTTATTTGTAAACTTCCGAGCACCGGATAACATAACTTTTGAGGATGTCACTGATTCTACAGAAACTCAATTCACTAAAAAATCTCCGATTACTAAGAACACTTATCACGACTGGGAGTTTATAAACCATGTTGTAACAATTGACTTTATCAAGAAGCTCGATTTTGTGAAACTTCTGACGTCATCTGATTCCAAAGTGTTTCTCAAGTCATGTTATTTGAATGTTTGCATTGTTGCACTGGCTGTACAATCATATCTCTCAAAATTGGATAATATCACATACCCAGAAGGTTGCCCCGTTTTCCCAGATGAAATGAATATTACCACAAGCAAGTGTCCAAAAGTGGAGAACAGAATCAAATGCAGAGTTATTGGAAAATTGCGAGAACTCAATATCACTAAAGAGGAATTCCTACTTCTCAATATAATATTTATTTGTAATCCAGGTATGAAAATATGGCCAAAAAAATTGATTTTCAACAAATTCAAATTTTCCAGATGTCCCAAACATGTCGGAAACGGGTCGTTTACTTTTGAATTGTTATCAACGAATGTATGGTTCTCTCCTTTTGAAATACTGTCAAGTCACCTATCAGAAGCATGCTCCCACTCGTTACACAGATCTTCTATCCATATGTAACGTCATCTCAAAAACTCGGCAAGATATTAATTCTGTGGCTATATTATTCCAAATCTATCAGCCCGCAATGGAATGGAAACAAATGATAAGAGGAGCGATAGATTATCATTCCAAGTGAACACATATTGTCTGTTTCATTTCAACTCACTACCGTAAAACCTGTTATAGGAGGGCCCCTCACACT</canonical>
            <polymorphic>GATCAATGTGAAAATGGAGATAATTGCTATAAAAATCCAGACGAAATCGCAAACTACGATTGCAGAATTTGTCGTTTTCAACAATGTCTTCGGGCTGAAATGATTCAGAAGCTGGATAAACTGGAACTTTCCGATACTATAGAAAATCTTTGTCGAATGGAAATGGAAAAATGGAACTTATTTGTAAACTTCCGAGCACCGGATAACATAACTTTTGAGGATGTCACTGATTCTACAGAAACTCAATTCACTAAAAAATCTCCGATTACTAAGAACACTTATCACGACTGGGAGTTTATAAACCATGTTGTAACAATTGACTTTATCAAGAAGCTCGATTTTGTGAAACTTCTGACGTCATCTGATTCCAAAGTGTTTCTCAAGTCATGTTATTTGAATGTTTGCATTGTTGCACTGGCTGTACAATCATATCTCTCAAAATTGGATAATATCACATACCCAGAAGGTTGCCCCGTTTTCCCAGATGAAATGAATATTAYCACAAGCAAGTGTCCAAAAGTGGAGAACAGAATCAAATGCAGAGTTATTGGAAAATTGCGAGAACTCAATATCACTAAAGAGGAATTCCTACTTCTCAATATAATATTTATTTGTAATCCAGGTATGAAAATATGGCCAAAAAAATTGATTTTCAACAAATTCAAATTTTCCAGATGTCCCAAACATGTCGGAAACGGGTCGTTTACTTTTGAATTGTTATCAACGAATGTATGGTTCTCTCCTTTTGAAATACTGTCAAGTCACCTATCAGAAGCATGCTCCCACTCGTTACACAGATCTTCTATCCATATGTAACGTCATCTCAAAAACTCGGCAAGATATTAATTCTGTGGCTATATTATTCCAAATCTATCAGCCCGCAATGGAATGGAAACAAATGATAAGAGGAGCGATAGATTATCATTCCAAGTGAACACATATTGTCTGTTTCATTTCAACTCACTACCGTAAAACCTGTTATAGGAGGGCCCCTCACACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATTGACTTTATCAAGAAGCTC</pcr_primer_p1>
		<pcr_primer_p2>AATTTTCCAATAACTCTGCATTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>CAATTGACTTTATCAAGAAGCTCGATTTTGTGAAACTTCTGACGTCATCTGATTCCAAAGTGTTTCTCAAGTCATGTTATTTGAATGTTTGCATTGTTGCACTGGCTGTACAATCATATCTCTCAAAATTGGATAATATCACATACCCAGAAGGTTGCCCCGTTTTCCCAGATGAAATGAATATTACCACAAGCAAGTGTCCAAAAGTGGAGAACAGAATCAAATGCAGAGTTATTGGAAAATT</canonical_amplicon>
		<polymorphic_amplicon>CAATTGACTTTATCAAGAAGCTCGATTTTGTGAAACTTCTGACGTCATCTGATTCCAAAGTGTTTCTCAAGTCATGTTATTTGAATGTTTGCATTGTTGCACTGGCTGTACAATCATATCTCTCAAAATTGGATAATATCACATACCCAGAAGGTTGCCCCGTTTTCCCAGATGAAATGAATATTAYCACAAGCAAGTGTCCAAAAGTGGAGAACAGAATCAAATGCAGAGTTATTGGAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39055</snp_id>
        <super_contig>c013401056.Contig1</super_contig>
        <contig_pos>872244</contig_pos>
        <strand>+</strand>
        <context>TGTCCAAAAG[C/T]GGAGAACAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCCCGTTTTCCCAGATGAAATGAATATTACCACAAGCAAGTGTCCAAAAG</left_flank>
        <right_flank>GGAGAACAGAATCAAATGCAGAGTTATTGGAAAATTGCGAGAACTCAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGCTATAAAAATCCAGACGAAATCGCAAACTACGATTGCAGAATTTGTCGTTTTCAACAATGTCTTCGGGCTGAAATGATTCAGAAGCTGGATAAACTGGAACTTTCCGATACTATAGAAAATCTTTGTCGAATGGAAATGGAAAAATGGAACTTATTTGTAAACTTCCGAGCACCGGATAACATAACTTTTGAGGATGTCACTGATTCTACAGAAACTCAATTCACTAAAAAATCTCCGATTACTAAGAACACTTATCACGACTGGGAGTTTATAAACCATGTTGTAACAATTGACTTTATCAAGAAGCTCGATTTTGTGAAACTTCTGACGTCATCTGATTCCAAAGTGTTTCTCAAGTCATGTTATTTGAATGTTTGCATTGTTGCACTGGCTGTACAATCATATCTCTCAAAATTGGATAATATCACATACCCAGAAGGTTGCCCCGTTTTCCCAGATGAAATGAATATTACCACAAGCAAGTGTCCAAAAGTGGAGAACAGAATCAAATGCAGAGTTATTGGAAAATTGCGAGAACTCAATATCACTAAAGAGGAATTCCTACTTCTCAATATAATATTTATTTGTAATCCAGGTATGAAAATATGGCCAAAAAAATTGATTTTCAACAAATTCAAATTTTCCAGATGTCCCAAACATGTCGGAAACGGGTCGTTTACTTTTGAATTGTTATCAACGAATGTATGGTTCTCTCCTTTTGAAATACTGTCAAGTCACCTATCAGAAGCATGCTCCCACTCGTTACACAGATCTTCTATCCATATGTAACGTCATCTCAAAAACTCGGCAAGATATTAATTCTGTGGCTATATTATTCCAAATCTATCAGCCCGCAATGGAATGGAAACAAATGATAAGAGGAGCGATAGATTATCATTCCAAGTGAACACATATTGTCTGTTTCATTTCAACTCACTACCGTAAAACCTGTTATAGGAGGGCCCCTCACACTGTCAATTTTGAGCTAATTCAT</canonical>
            <polymorphic>AATTGCTATAAAAATCCAGACGAAATCGCAAACTACGATTGCAGAATTTGTCGTTTTCAACAATGTCTTCGGGCTGAAATGATTCAGAAGCTGGATAAACTGGAACTTTCCGATACTATAGAAAATCTTTGTCGAATGGAAATGGAAAAATGGAACTTATTTGTAAACTTCCGAGCACCGGATAACATAACTTTTGAGGATGTCACTGATTCTACAGAAACTCAATTCACTAAAAAATCTCCGATTACTAAGAACACTTATCACGACTGGGAGTTTATAAACCATGTTGTAACAATTGACTTTATCAAGAAGCTCGATTTTGTGAAACTTCTGACGTCATCTGATTCCAAAGTGTTTCTCAAGTCATGTTATTTGAATGTTTGCATTGTTGCACTGGCTGTACAATCATATCTCTCAAAATTGGATAATATCACATACCCAGAAGGTTGCCCCGTTTTCCCAGATGAAATGAATATTACCACAAGCAAGTGTCCAAAAGYGGAGAACAGAATCAAATGCAGAGTTATTGGAAAATTGCGAGAACTCAATATCACTAAAGAGGAATTCCTACTTCTCAATATAATATTTATTTGTAATCCAGGTATGAAAATATGGCCAAAAAAATTGATTTTCAACAAATTCAAATTTTCCAGATGTCCCAAACATGTCGGAAACGGGTCGTTTACTTTTGAATTGTTATCAACGAATGTATGGTTCTCTCCTTTTGAAATACTGTCAAGTCACCTATCAGAAGCATGCTCCCACTCGTTACACAGATCTTCTATCCATATGTAACGTCATCTCAAAAACTCGGCAAGATATTAATTCTGTGGCTATATTATTCCAAATCTATCAGCCCGCAATGGAATGGAAACAAATGATAAGAGGAGCGATAGATTATCATTCCAAGTGAACACATATTGTCTGTTTCATTTCAACTCACTACCGTAAAACCTGTTATAGGAGGGCCCCTCACACTGTCAATTTTGAGCTAATTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>190 177 80 61 59 52 48 40 39 33 30 28 27 26 24 23 21 10 10 9 7 4 2</canonical_bands>
                <polymorphic_bands>190 177 80 62 61 59 48 40 39 33 30 28 27 26 24 23 21 10 9 7 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAGTCATGTTATTTGAATGTTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCATACCTGGATTACAAATAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCAAGTCATGTTATTTGAATGTTTGCATTGTTGCACTGGCTGTACAATCATATCTCTCAAAATTGGATAATATCACATACCCAGAAGGTTGCCCCGTTTTCCCAGATGAAATGAATATTACCACAAGCAAGTGTCCAAAAGTGGAGAACAGAATCAAATGCAGAGTTATTGGAAAATTGCGAGAACTCAATATCACTAAAGAGGAATTCCTACTTCTCAATATAATATTTATTTGTAATCCAGGTATGAAA</canonical_amplicon>
		<polymorphic_amplicon>TCAAGTCATGTTATTTGAATGTTTGCATTGTTGCACTGGCTGTACAATCATATCTCTCAAAATTGGATAATATCACATACCCAGAAGGTTGCCCCGTTTTCCCAGATGAAATGAATATTACCACAAGCAAGTGTCCAAAAGYGGAGAACAGAATCAAATGCAGAGTTATTGGAAAATTGCGAGAACTCAATATCACTAAAGAGGAATTCCTACTTCTCAATATAATATTTATTTGTAATCCAGGTATGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39056</snp_id>
        <super_contig>c013401254.Contig1</super_contig>
        <contig_pos>8381</contig_pos>
        <strand>-</strand>
        <context>TCTGGAAAAT[A/G]AGGAATTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGTCGGAAGATGTGGCGTACTTGAAGGAGGTGAGGAGGTTCTGGAAAAT</left_flank>
        <right_flank>AGGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAATAATTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGAAATTCAGAAAATCACATTCAATTTTGATTTGACCAGGATTTTTCGACAAAATCGAACGCCGGATTTTTCAAAATTATATGAGAGAAATCTGAAATTTTTGGGAGAATTAAAAAATTCTATTGGACCCAAAAAGTTTCTAAAAATTCAAACTTTATGGATGGTTTCGACGAGACAAGAGGAATTAAAGATAATTTTGGAATTCATTTTTCCGAAAATTTTGGTTTTCAATTTTGTTCACGACACTTCCAAAGTAGAAGAAAATCGTACAATCCAACGAATCGACTTTTCGGAAGATCGAAAATTTTTGGAATTAAACGAAATTTCGAAAATGAAGGCGTGAATGGATTCTGAAGAGATTTATTGTCCAAGTTATCGAATTATTACGGAAATTCAGAATTTTGAAATTGCTCATTTAAAAAAAGGAGAGATTCTAGTGGAGAACGTTTCGTCGGAAGATGTGGCGTACTTGAAGGAGGTGAGGAGGTTCTGGAAAATTAGGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAATAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAATAGATCAAGAATTCAAGAATTCAAGAATTCGAGAATTCAAGAATTCAAGAATTCAAGAATTCAGAAATTCAAGAATTCAAGAATTCAGAATTCGGAAATTAAAAATTTTTCAGAAATTCCTCCAAAATCAACGTCTTGAAAAGTTCCAAATCTTTTTCAAAAATTGTCAAATCAATGGAGAAATCTACAATCTACTGGGCAGCCCATTCAAAATCACTGAACATTTCAGTGTTTGGTATTTCAGAATTATAAATTCAGAATTTTCACTTCATCTGAGATTTGTTGTCTCAAAATCTATCACTTTTTCTCTTGTTCCATTGAAAAACGTTC</canonical>
            <polymorphic>GAGAAATTCAGAAAATCACATTCAATTTTGATTTGACCAGGATTTTTCGACAAAATCGAACGCCGGATTTTTCAAAATTATATGAGAGAAATCTGAAATTTTTGGGAGAATTAAAAAATTCTATTGGACCCAAAAAGTTTCTAAAAATTCAAACTTTATGGATGGTTTCGACGAGACAAGAGGAATTAAAGATAATTTTGGAATTCATTTTTCCGAAAATTTTGGTTTTCAATTTTGTTCACGACACTTCCAAAGTAGAAGAAAATCGTACAATCCAACGAATCGACTTTTCGGAAGATCGAAAATTTTTGGAATTAAACGAAATTTCGAAAATGAAGGCGTGAATGGATTCTGAAGAGATTTATTGTCCAAGTTATCGAATTATTACGGAAATTCAGAATTTTGAAATTGCTCATTTAAAAAAAGGAGAGATTCTAGTGGAGAACGTTTCGTCGGAAGATGTGGCGTACTTGAAGGAGGTGAGGAGGTTCTGGAAAATRAGGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAATAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAATAGATCAAGAATTCAAGAATTCAAGAATTCGAGAATTCAAGAATTCAAGAATTCAAGAATTCAGAAATTCAAGAATTCAAGAATTCAGAATTCGGAAATTAAAAATTTTTCAGAAATTCCTCCAAAATCAACGTCTTGAAAAGTTCCAAATCTTTTTCAAAAATTGTCAAATCAATGGAGAAATCTACAATCTACTGGGCAGCCCATTCAAAATCACTGAACATTTCAGTGTTTGGTATTTCAGAATTATAAATTCAGAATTTTCACTTCATCTGAGATTTGTTGTCTCAAAATCTATCACTTTTTCTCTTGTTCCATTGAAAAACGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>90 83 73 72 57 52 47 38 29 21 19 16 16 13 12 12 11 10 10 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7 7 7 7 4</canonical_bands>
                <polymorphic_bands>97 83 73 72 57 52 47 38 29 21 19 16 16 13 12 12 11 10 10 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7 7 7 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGGAGAGATTCTAGTGGAGAAC</pcr_primer_p1>
		<pcr_primer_p2>AATTCTTGATCTATTGAATTCTTGA</pcr_primer_p2>
		<pcr_amplicon_size>260</pcr_amplicon_size>
		<canonical_amplicon>AAGGAGAGATTCTAGTGGAGAACGTTTCGTCGGAAGATGTGGCGTACTTGAAGGAGGTGAGGAGGTTCTGGAAAATTAGGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAATAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAATAGATCAAGAATT</canonical_amplicon>
		<polymorphic_amplicon>AAGGAGAGATTCTAGTGGAGAACGTTTCGTCGGAAGATGTGGCGTACTTGAAGGAGGTGAGGAGGTTCTGGAAAATRAGGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAATAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAAGAATTCAATAGATCAAGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39057</snp_id>
        <super_contig>c013401254.Contig1</super_contig>
        <contig_pos>14690</contig_pos>
        <strand></strand>
        <context>TCAAAATGAC[A/G]AATTTTAATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATTTTTAGTGGGGCTGGGCTATAATTATTTTTTCAAATCAAAATGAC</left_flank>
        <right_flank>AATTTTAATATTTGTTATATGCCAAATTTTCTTGTTTTTCATGTGTTTTG</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATTTTTTCAGTTTGGATTTGGATTCGAAAATTGATTTTTTAGTATTTTTGAAAATCCCGAAATCTTCTTTTTTTCAAATTTTACTTGTTGGTTTTTTTTTTATTTTATGATGAATAAATGAATTGTTGCTTAAATTTTTTTTTTAATTTGCTAACAATTCAAAGTACGAAAAATGGGTCAACGCACCAGAGTAGTTTGGCGTATTTCTAGCGATTTGGCGCATTTTTCATGCCTTGACACGTTTTCCGACCCTTGACGCATGTCTCGTGCCTTTTCCGTGACTTGGCGTGTTTTCGGTGCGTTGGCGCATATTTTGTCCCTTGACGCGTTTTCAGCACCCAGACGTGTTCTTCCTCCGTGCCTTGACGCATTTTTCGTGCATTGTAAAACAATAATTTTCTCGAGTTTCCCATTCAAAAATATTGCCATTTTCAAGGAAATAAACCCAAAATTTTTAGTGGGGCTGGGCTATAATTATTTTTTCAAATCAAAATGACAAATTTTAATATTTGTTATATGCCAAATTTTCTTGTTTTTCATGTGTTTTGACTAGGAAAACAAATCAGAAAACTTTTCGAAAATTTATTTTTCTTTTTTTTTCTCAAATTCAAAAAGCAAAAAAAAAATGGAGTTGGGCGTTTGGGATTATGCATATCTTGTCAAATATTTGAATTTAATTTTCGCATGTTTGGCATTCGTTACAAACCTAATCCATCTATTTTTCCTAACCAGAAATTGGAGGAATTGCCCGGATTTTGTATTTTTCGCAATAATTTGCATTTCCGATATCGTTTATCCATTTTTATTATTGATTGAAAAATGTATGCAGATTATAAAATATATTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGATTTCCAATTGGATTCTATTTCTTCTGGCATTTTTGTCACTTTGGAATTCAAAAAATCGTTGTTTGA</canonical>
            <polymorphic>TGATTTTTTCAGTTTGGATTTGGATTCGAAAATTGATTTTTTAGTATTTTTGAAAATCCCGAAATCTTCTTTTTTTCAAATTTTACTTGTTGGTTTTTTTTTTATTTTATGATGAATAAATGAATTGTTGCTTAAATTTTTTTTTTAATTTGCTAACAATTCAAAGTACGAAAAATGGGTCAACGCACCAGAGTAGTTTGGCGTATTTCTAGCGATTTGGCGCATTTTTCATGCCTTGACACGTTTTCCGACCCTTGACGCATGTCTCGTGCCTTTTCCGTGACTTGGCGTGTTTTCGGTGCGTTGGCGCATATTTTGTCCCTTGACGCGTTTTCAGCACCCAGACGTGTTCTTCCTCCGTGCCTTGACGCATTTTTCGTGCATTGTAAAACAATAATTTTCTCGAGTTTCCCATTCAAAAATATTGCCATTTTCAAGGAAATAAACCCAAAATTTTTAGTGGGGCTGGGCTATAATTATTTTTTCAAATCAAAATGACRAATTTTAATATTTGTTATATGCCAAATTTTCTTGTTTTTCATGTGTTTTGACTAGGAAAACAAATCAGAAAACTTTTCGAAAATTTATTTTTCTTTTTTTTTCTCAAATTCAAAAAGCAAAAAAAAAATGGAGTTGGGCGTTTGGGATTATGCATATCTTGTCAAATATTTGAATTTAATTTTCGCATGTTTGGCATTCGTTACAAACCTAATCCATCTATTTTTCCTAACCAGAAATTGGAGGAATTGCCCGGATTTTGTATTTTTCGCAATAATTTGCATTTCCGATATCGTTTATCCATTTTTATTATTGATTGAAAAATGTATGCAGATTATAAAATATATTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGATTTCCAATTGGATTCTATTTCTTCTGGCATTTTTGTCACTTTGGAATTCAAAAAATCGTTGTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>317 306 78 66 57 56 49 25 24 22</canonical_bands>
                <polymorphic_bands>317 306 78 73 66 57 56 25 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAATATTGCCATTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>CAAGATATGCATAATCCCAAAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATATTGCCATTTTCAAGGAAATAAACCCAAAATTTTTAGTGGGGCTGGGCTATAATTATTTTTTCAAATCAAAATGACAAATTTTAATATTTGTTATATGCCAAATTTTCTTGTTTTTCATGTGTTTTGACTAGGAAAACAAATCAGAAAACTTTTCGAAAATTTATTTTTCTTTTTTTTTCTCAAATTCAAAAAGCAAAAAAAAAATGGAGTTGGGCGTTTGGGATTATGCATATCTTG</canonical_amplicon>
		<polymorphic_amplicon>CAAAAATATTGCCATTTTCAAGGAAATAAACCCAAAATTTTTAGTGGGGCTGGGCTATAATTATTTTTTCAAATCAAAATGACRAATTTTAATATTTGTTATATGCCAAATTTTCTTGTTTTTCATGTGTTTTGACTAGGAAAACAAATCAGAAAACTTTTCGAAAATTTATTTTTCTTTTTTTTTCTCAAATTCAAAAAGCAAAAAAAAAATGGAGTTGGGCGTTTGGGATTATGCATATCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39058</snp_id>
        <super_contig>c013401254.Contig1</super_contig>
        <contig_pos>14959</contig_pos>
        <strand></strand>
        <context>TGTATTTTTC[G/T]CAATAATTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATTTTTCCTAACCAGAAATTGGAGGAATTGCCCGGATTTTGTATTTTTC</left_flank>
        <right_flank>CAATAATTTGCATTTCCGATATCGTTTATCCATTTTTATTATTGATTGAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCCTTTTCCGTGACTTGGCGTGTTTTCGGTGCGTTGGCGCATATTTTGTCCCTTGACGCGTTTTCAGCACCCAGACGTGTTCTTCCTCCGTGCCTTGACGCATTTTTCGTGCATTGTAAAACAATAATTTTCTCGAGTTTCCCATTCAAAAATATTGCCATTTTCAAGGAAATAAACCCAAAATTTTTAGTGGGGCTGGGCTATAATTATTTTTTCAAATCAAAATGACAAATTTTAATATTTGTTATATGCCAAATTTTCTTGTTTTTCATGTGTTTTGACTAGGAAAACAAATCAGAAAACTTTTCGAAAATTTATTTTTCTTTTTTTTTCTCAAATTCAAAAAGCAAAAAAAAAATGGAGTTGGGCGTTTGGGATTATGCATATCTTGTCAAATATTTGAATTTAATTTTCGCATGTTTGGCATTCGTTACAAACCTAATCCATCTATTTTTCCTAACCAGAAATTGGAGGAATTGCCCGGATTTTGTATTTTTCGCAATAATTTGCATTTCCGATATCGTTTATCCATTTTTATTATTGATTGAAAAATGTATGCAGATTATAAAATATATTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGATTTCCAATTGGATTCTATTTCTTCTGGCATTTTTGTCACTTTGGAATTCAAAAAATCGTTGTTTGAATTTCCAAAAATCCCTAAAATACTCAATTTATTGTTCGATATTCTTCTTTCTACACGTCTTTTCAGTTTTTCTATTCACATTTTTCATTTTCCTTGAGTTACCGTATTCCAAATGCAATTCTGATGGATTATATCAACAATTTTTGGCTGAAAATCCCGAAAATTTTTGGGTGATTTGTACCAAAACTGTCAGCAGAGTTTTCTCCGTTTTCGAGATTATCAGATTTCTGTCATTCTGTGTTTTTCCAATTTTGCTGATTAAGAAAAAG</canonical>
            <polymorphic>TGCCTTTTCCGTGACTTGGCGTGTTTTCGGTGCGTTGGCGCATATTTTGTCCCTTGACGCGTTTTCAGCACCCAGACGTGTTCTTCCTCCGTGCCTTGACGCATTTTTCGTGCATTGTAAAACAATAATTTTCTCGAGTTTCCCATTCAAAAATATTGCCATTTTCAAGGAAATAAACCCAAAATTTTTAGTGGGGCTGGGCTATAATTATTTTTTCAAATCAAAATGACAAATTTTAATATTTGTTATATGCCAAATTTTCTTGTTTTTCATGTGTTTTGACTAGGAAAACAAATCAGAAAACTTTTCGAAAATTTATTTTTCTTTTTTTTTCTCAAATTCAAAAAGCAAAAAAAAAATGGAGTTGGGCGTTTGGGATTATGCATATCTTGTCAAATATTTGAATTTAATTTTCGCATGTTTGGCATTCGTTACAAACCTAATCCATCTATTTTTCCTAACCAGAAATTGGAGGAATTGCCCGGATTTTGTATTTTTCKCAATAATTTGCATTTCCGATATCGTTTATCCATTTTTATTATTGATTGAAAAATGTATGCAGATTATAAAATATATTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGATTTCCAATTGGATTCTATTTCTTCTGGCATTTTTGTCACTTTGGAATTCAAAAAATCGTTGTTTGAATTTCCAAAAATCCCTAAAATACTCAATTTATTGTTCGATATTCTTCTTTCTACACGTCTTTTCAGTTTTTCTATTCACATTTTTCATTTTCCTTGAGTTACCGTATTCCAAATGCAATTCTGATGGATTATATCAACAATTTTTGGCTGAAAATCCCGAAAATTTTTGGGTGATTTGTACCAAAACTGTCAGCAGAGTTTTCTCCGTTTTCGAGATTATCAGATTTCTGTCATTCTGTGTTTTTCCAATTTTGCTGATTAAGAAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCTATTTTTCCTAACCAGAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAATGCCAGAAGAAATAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CATCTATTTTTCCTAACCAGAAATTGGAGGAATTGCCCGGATTTTGTATTTTTCGCAATAATTTGCATTTCCGATATCGTTTATCCATTTTTATTATTGATTGAAAAATGTATGCAGATTATAAAATATATTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGATTTCCAATTGGATTCTATTTCTTCTGGCATTTT</canonical_amplicon>
		<polymorphic_amplicon>CATCTATTTTTCCTAACCAGAAATTGGAGGAATTGCCCGGATTTTGTATTTTTCKCAATAATTTGCATTTCCGATATCGTTTATCCATTTTTATTATTGATTGAAAAATGTATGCAGATTATAAAATATATTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGATTTCCAATTGGATTCTATTTCTTCTGGCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39059</snp_id>
        <super_contig>c013401254.Contig1</super_contig>
        <contig_pos>15010</contig_pos>
        <strand></strand>
        <context>ATTGATTGAA[A/G]AATGTATGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAATAATTTGCATTTCCGATATCGTTTATCCATTTTTATTATTGATTGAA</left_flank>
        <right_flank>AATGTATGCAGATTATAAAATATATTGATCATAAAGATTGTATTGGATAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTGACGCGTTTTCAGCACCCAGACGTGTTCTTCCTCCGTGCCTTGACGCATTTTTCGTGCATTGTAAAACAATAATTTTCTCGAGTTTCCCATTCAAAAATATTGCCATTTTCAAGGAAATAAACCCAAAATTTTTAGTGGGGCTGGGCTATAATTATTTTTTCAAATCAAAATGACAAATTTTAATATTTGTTATATGCCAAATTTTCTTGTTTTTCATGTGTTTTGACTAGGAAAACAAATCAGAAAACTTTTCGAAAATTTATTTTTCTTTTTTTTTCTCAAATTCAAAAAGCAAAAAAAAAATGGAGTTGGGCGTTTGGGATTATGCATATCTTGTCAAATATTTGAATTTAATTTTCGCATGTTTGGCATTCGTTACAAACCTAATCCATCTATTTTTCCTAACCAGAAATTGGAGGAATTGCCCGGATTTTGTATTTTTCGCAATAATTTGCATTTCCGATATCGTTTATCCATTTTTATTATTGATTGAAAAATGTATGCAGATTATAAAATATATTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGATTTCCAATTGGATTCTATTTCTTCTGGCATTTTTGTCACTTTGGAATTCAAAAAATCGTTGTTTGAATTTCCAAAAATCCCTAAAATACTCAATTTATTGTTCGATATTCTTCTTTCTACACGTCTTTTCAGTTTTTCTATTCACATTTTTCATTTTCCTTGAGTTACCGTATTCCAAATGCAATTCTGATGGATTATATCAACAATTTTTGGCTGAAAATCCCGAAAATTTTTGGGTGATTTGTACCAAAACTGTCAGCAGAGTTTTCTCCGTTTTCGAGATTATCAGATTTCTGTCATTCTGTGTTTTTCCAATTTTGCTGATTAAGAAAAAGTTTGGATTAATTGCGAAATTGGTGATTTTCAATTTGATTCTGGAAATTTCC</canonical>
            <polymorphic>CCTTGACGCGTTTTCAGCACCCAGACGTGTTCTTCCTCCGTGCCTTGACGCATTTTTCGTGCATTGTAAAACAATAATTTTCTCGAGTTTCCCATTCAAAAATATTGCCATTTTCAAGGAAATAAACCCAAAATTTTTAGTGGGGCTGGGCTATAATTATTTTTTCAAATCAAAATGACAAATTTTAATATTTGTTATATGCCAAATTTTCTTGTTTTTCATGTGTTTTGACTAGGAAAACAAATCAGAAAACTTTTCGAAAATTTATTTTTCTTTTTTTTTCTCAAATTCAAAAAGCAAAAAAAAAATGGAGTTGGGCGTTTGGGATTATGCATATCTTGTCAAATATTTGAATTTAATTTTCGCATGTTTGGCATTCGTTACAAACCTAATCCATCTATTTTTCCTAACCAGAAATTGGAGGAATTGCCCGGATTTTGTATTTTTCGCAATAATTTGCATTTCCGATATCGTTTATCCATTTTTATTATTGATTGAARAATGTATGCAGATTATAAAATATATTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGATTTCCAATTGGATTCTATTTCTTCTGGCATTTTTGTCACTTTGGAATTCAAAAAATCGTTGTTTGAATTTCCAAAAATCCCTAAAATACTCAATTTATTGTTCGATATTCTTCTTTCTACACGTCTTTTCAGTTTTTCTATTCACATTTTTCATTTTCCTTGAGTTACCGTATTCCAAATGCAATTCTGATGGATTATATCAACAATTTTTGGCTGAAAATCCCGAAAATTTTTGGGTGATTTGTACCAAAACTGTCAGCAGAGTTTTCTCCGTTTTCGAGATTATCAGATTTCTGTCATTCTGTGTTTTTCCAATTTTGCTGATTAAGAAAAAGTTTGGATTAATTGCGAAATTGGTGATTTTCAATTTGATTCTGGAAATTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCTATTTTTCCTAACCAGAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAATGCCAGAAGAAATAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CATCTATTTTTCCTAACCAGAAATTGGAGGAATTGCCCGGATTTTGTATTTTTCGCAATAATTTGCATTTCCGATATCGTTTATCCATTTTTATTATTGATTGAAAAATGTATGCAGATTATAAAATATATTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGATTTCCAATTGGATTCTATTTCTTCTGGCATTTT</canonical_amplicon>
		<polymorphic_amplicon>CATCTATTTTTCCTAACCAGAAATTGGAGGAATTGCCCGGATTTTGTATTTTTCGCAATAATTTGCATTTCCGATATCGTTTATCCATTTTTATTATTGATTGAARAATGTATGCAGATTATAAAATATATTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGATTTCCAATTGGATTCTATTTCTTCTGGCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39060</snp_id>
        <super_contig>c013401254.Contig1</super_contig>
        <contig_pos>15030</contig_pos>
        <strand></strand>
        <context>AGATTATAAA[A/T]TATATTGATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATCGTTTATCCATTTTTATTATTGATTGAAAAATGTATGCAGATTATAAA</left_flank>
        <right_flank>TATATTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGACGTGTTCTTCCTCCGTGCCTTGACGCATTTTTCGTGCATTGTAAAACAATAATTTTCTCGAGTTTCCCATTCAAAAATATTGCCATTTTCAAGGAAATAAACCCAAAATTTTTAGTGGGGCTGGGCTATAATTATTTTTTCAAATCAAAATGACAAATTTTAATATTTGTTATATGCCAAATTTTCTTGTTTTTCATGTGTTTTGACTAGGAAAACAAATCAGAAAACTTTTCGAAAATTTATTTTTCTTTTTTTTTCTCAAATTCAAAAAGCAAAAAAAAAATGGAGTTGGGCGTTTGGGATTATGCATATCTTGTCAAATATTTGAATTTAATTTTCGCATGTTTGGCATTCGTTACAAACCTAATCCATCTATTTTTCCTAACCAGAAATTGGAGGAATTGCCCGGATTTTGTATTTTTCGCAATAATTTGCATTTCCGATATCGTTTATCCATTTTTATTATTGATTGAAAAATGTATGCAGATTATAAAATATATTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGATTTCCAATTGGATTCTATTTCTTCTGGCATTTTTGTCACTTTGGAATTCAAAAAATCGTTGTTTGAATTTCCAAAAATCCCTAAAATACTCAATTTATTGTTCGATATTCTTCTTTCTACACGTCTTTTCAGTTTTTCTATTCACATTTTTCATTTTCCTTGAGTTACCGTATTCCAAATGCAATTCTGATGGATTATATCAACAATTTTTGGCTGAAAATCCCGAAAATTTTTGGGTGATTTGTACCAAAACTGTCAGCAGAGTTTTCTCCGTTTTCGAGATTATCAGATTTCTGTCATTCTGTGTTTTTCCAATTTTGCTGATTAAGAAAAAGTTTGGATTAATTGCGAAATTGGTGATTTTCAATTTGATTCTGGAAATTTCCATAATGATTGTGAAATTGAA</canonical>
            <polymorphic>CCAGACGTGTTCTTCCTCCGTGCCTTGACGCATTTTTCGTGCATTGTAAAACAATAATTTTCTCGAGTTTCCCATTCAAAAATATTGCCATTTTCAAGGAAATAAACCCAAAATTTTTAGTGGGGCTGGGCTATAATTATTTTTTCAAATCAAAATGACAAATTTTAATATTTGTTATATGCCAAATTTTCTTGTTTTTCATGTGTTTTGACTAGGAAAACAAATCAGAAAACTTTTCGAAAATTTATTTTTCTTTTTTTTTCTCAAATTCAAAAAGCAAAAAAAAAATGGAGTTGGGCGTTTGGGATTATGCATATCTTGTCAAATATTTGAATTTAATTTTCGCATGTTTGGCATTCGTTACAAACCTAATCCATCTATTTTTCCTAACCAGAAATTGGAGGAATTGCCCGGATTTTGTATTTTTCGCAATAATTTGCATTTCCGATATCGTTTATCCATTTTTATTATTGATTGAAAAATGTATGCAGATTATAAAWTATATTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGATTTCCAATTGGATTCTATTTCTTCTGGCATTTTTGTCACTTTGGAATTCAAAAAATCGTTGTTTGAATTTCCAAAAATCCCTAAAATACTCAATTTATTGTTCGATATTCTTCTTTCTACACGTCTTTTCAGTTTTTCTATTCACATTTTTCATTTTCCTTGAGTTACCGTATTCCAAATGCAATTCTGATGGATTATATCAACAATTTTTGGCTGAAAATCCCGAAAATTTTTGGGTGATTTGTACCAAAACTGTCAGCAGAGTTTTCTCCGTTTTCGAGATTATCAGATTTCTGTCATTCTGTGTTTTTCCAATTTTGCTGATTAAGAAAAAGTTTGGATTAATTGCGAAATTGGTGATTTTCAATTTGATTCTGGAAATTTCCATAATGATTGTGAAATTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATCTATTTTTCCTAACCAGAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAATGCCAGAAGAAATAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CATCTATTTTTCCTAACCAGAAATTGGAGGAATTGCCCGGATTTTGTATTTTTCGCAATAATTTGCATTTCCGATATCGTTTATCCATTTTTATTATTGATTGAAAAATGTATGCAGATTATAAAATATATTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGATTTCCAATTGGATTCTATTTCTTCTGGCATTTT</canonical_amplicon>
		<polymorphic_amplicon>CATCTATTTTTCCTAACCAGAAATTGGAGGAATTGCCCGGATTTTGTATTTTTCGCAATAATTTGCATTTCCGATATCGTTTATCCATTTTTATTATTGATTGAAAAATGTATGCAGATTATAAAWTATATTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGATTTCCAATTGGATTCTATTTCTTCTGGCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39061</snp_id>
        <super_contig>c013401254.Contig1</super_contig>
        <contig_pos>15126</contig_pos>
        <strand></strand>
        <context>GCAACCAGAT[T/C]TCCAATTGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGAT</left_flank>
        <right_flank>TCCAATTGGATTCTATTTCTTCTGGCATTTTTGTCACTTTGGAATTCAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGAAATAAACCCAAAATTTTTAGTGGGGCTGGGCTATAATTATTTTTTCAAATCAAAATGACAAATTTTAATATTTGTTATATGCCAAATTTTCTTGTTTTTCATGTGTTTTGACTAGGAAAACAAATCAGAAAACTTTTCGAAAATTTATTTTTCTTTTTTTTTCTCAAATTCAAAAAGCAAAAAAAAAATGGAGTTGGGCGTTTGGGATTATGCATATCTTGTCAAATATTTGAATTTAATTTTCGCATGTTTGGCATTCGTTACAAACCTAATCCATCTATTTTTCCTAACCAGAAATTGGAGGAATTGCCCGGATTTTGTATTTTTCGCAATAATTTGCATTTCCGATATCGTTTATCCATTTTTATTATTGATTGAAAAATGTATGCAGATTATAAAATATATTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGATTTCCAATTGGATTCTATTTCTTCTGGCATTTTTGTCACTTTGGAATTCAAAAAATCGTTGTTTGAATTTCCAAAAATCCCTAAAATACTCAATTTATTGTTCGATATTCTTCTTTCTACACGTCTTTTCAGTTTTTCTATTCACATTTTTCATTTTCCTTGAGTTACCGTATTCCAAATGCAATTCTGATGGATTATATCAACAATTTTTGGCTGAAAATCCCGAAAATTTTTGGGTGATTTGTACCAAAACTGTCAGCAGAGTTTTCTCCGTTTTCGAGATTATCAGATTTCTGTCATTCTGTGTTTTTCCAATTTTGCTGATTAAGAAAAAGTTTGGATTAATTGCGAAATTGGTGATTTTCAATTTGATTCTGGAAATTTCCATAATGATTGTGAAATTGAACTTTTTTGTTTCAGAAAATGGTATAGTAACCCAGTGAGTTTTTTTGTTTTTTTTTTCAAAAAAGTGAAAAACTGTAATTAAAAAAAAATATTTTTT</canonical>
            <polymorphic>AGGAAATAAACCCAAAATTTTTAGTGGGGCTGGGCTATAATTATTTTTTCAAATCAAAATGACAAATTTTAATATTTGTTATATGCCAAATTTTCTTGTTTTTCATGTGTTTTGACTAGGAAAACAAATCAGAAAACTTTTCGAAAATTTATTTTTCTTTTTTTTTCTCAAATTCAAAAAGCAAAAAAAAAATGGAGTTGGGCGTTTGGGATTATGCATATCTTGTCAAATATTTGAATTTAATTTTCGCATGTTTGGCATTCGTTACAAACCTAATCCATCTATTTTTCCTAACCAGAAATTGGAGGAATTGCCCGGATTTTGTATTTTTCGCAATAATTTGCATTTCCGATATCGTTTATCCATTTTTATTATTGATTGAAAAATGTATGCAGATTATAAAATATATTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGATYTCCAATTGGATTCTATTTCTTCTGGCATTTTTGTCACTTTGGAATTCAAAAAATCGTTGTTTGAATTTCCAAAAATCCCTAAAATACTCAATTTATTGTTCGATATTCTTCTTTCTACACGTCTTTTCAGTTTTTCTATTCACATTTTTCATTTTCCTTGAGTTACCGTATTCCAAATGCAATTCTGATGGATTATATCAACAATTTTTGGCTGAAAATCCCGAAAATTTTTGGGTGATTTGTACCAAAACTGTCAGCAGAGTTTTCTCCGTTTTCGAGATTATCAGATTTCTGTCATTCTGTGTTTTTCCAATTTTGCTGATTAAGAAAAAGTTTGGATTAATTGCGAAATTGGTGATTTTCAATTTGATTCTGGAAATTTCCATAATGATTGTGAAATTGAACTTTTTTGTTTCAGAAAATGGTATAGTAACCCAGTGAGTTTTTTTGTTTTTTTTTTCAAAAAAGTGAAAAACTGTAATTAAAAAAAAATATTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGATCATAAAGATTGTATTGGATA</pcr_primer_p1>
		<pcr_primer_p2>GGAAAATGAAAAATGTGAATAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGATTTCCAATTGGATTCTATTTCTTCTGGCATTTTTGTCACTTTGGAATTCAAAAAATCGTTGTTTGAATTTCCAAAAATCCCTAAAATACTCAATTTATTGTTCGATATTCTTCTTTCTACACGTCTTTTCAGTTTTTCTATTCACATTTTTCATTTTCC</canonical_amplicon>
		<polymorphic_amplicon>TTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGATYTCCAATTGGATTCTATTTCTTCTGGCATTTTTGTCACTTTGGAATTCAAAAAATCGTTGTTTGAATTTCCAAAAATCCCTAAAATACTCAATTTATTGTTCGATATTCTTCTTTCTACACGTCTTTTCAGTTTTTCTATTCACATTTTTCATTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39062</snp_id>
        <super_contig>c013401254.Contig1</super_contig>
        <contig_pos>15191</contig_pos>
        <strand></strand>
        <context>CGTTGTTTGA[A/C]WTTCCAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTCTTCTGGCATTTTTGTCACTTTGGAATTCAAAAAATCGTTGTTTGA</left_flank>
        <right_flank>TTTCCAAAAATCCCTAAAATACTCAATTTATTGTTCGATATTCTTCTTTC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTAATATTTGTTATATGCCAAATTTTCTTGTTTTTCATGTGTTTTGACTAGGAAAACAAATCAGAAAACTTTTCGAAAATTTATTTTTCTTTTTTTTTCTCAAATTCAAAAAGCAAAAAAAAAATGGAGTTGGGCGTTTGGGATTATGCATATCTTGTCAAATATTTGAATTTAATTTTCGCATGTTTGGCATTCGTTACAAACCTAATCCATCTATTTTTCCTAACCAGAAATTGGAGGAATTGCCCGGATTTTGTATTTTTCGCAATAATTTGCATTTCCGATATCGTTTATCCATTTTTATTATTGATTGAAAAATGTATGCAGATTATAAAATATATTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGATTTCCAATTGGATTCTATTTCTTCTGGCATTTTTGTCACTTTGGAATTCAAAAAATCGTTGTTTGAATTTCCAAAAATCCCTAAAATACTCAATTTATTGTTCGATATTCTTCTTTCTACACGTCTTTTCAGTTTTTCTATTCACATTTTTCATTTTCCTTGAGTTACCGTATTCCAAATGCAATTCTGATGGATTATATCAACAATTTTTGGCTGAAAATCCCGAAAATTTTTGGGTGATTTGTACCAAAACTGTCAGCAGAGTTTTCTCCGTTTTCGAGATTATCAGATTTCTGTCATTCTGTGTTTTTCCAATTTTGCTGATTAAGAAAAAGTTTGGATTAATTGCGAAATTGGTGATTTTCAATTTGATTCTGGAAATTTCCATAATGATTGTGAAATTGAACTTTTTTGTTTCAGAAAATGGTATAGTAACCCAGTGAGTTTTTTTGTTTTTTTTTTCAAAAAAGTGAAAAACTGTAATTAAAAAAAAATATTTTTTTGGATTACTGTAATACTTTTTTTTAATCCCAATACATTTTTCAAAAAAAAAATTCCAGGTCCAGC</canonical>
            <polymorphic>ATTTTAATATTTGTTATATGCCAAATTTTCTTGTTTTTCATGTGTTTTGACTAGGAAAACAAATCAGAAAACTTTTCGAAAATTTATTTTTCTTTTTTTTTCTCAAATTCAAAAAGCAAAAAAAAAATGGAGTTGGGCGTTTGGGATTATGCATATCTTGTCAAATATTTGAATTTAATTTTCGCATGTTTGGCATTCGTTACAAACCTAATCCATCTATTTTTCCTAACCAGAAATTGGAGGAATTGCCCGGATTTTGTATTTTTCGCAATAATTTGCATTTCCGATATCGTTTATCCATTTTTATTATTGATTGAAAAATGTATGCAGATTATAAAATATATTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGATTTCCAATTGGATTCTATTTCTTCTGGCATTTTTGTCACTTTGGAATTCAAAAAATCGTTGTTTGAMTTTCCAAAAATCCCTAAAATACTCAATTTATTGTTCGATATTCTTCTTTCTACACGTCTTTTCAGTTTTTCTATTCACATTTTTCATTTTCCTTGAGTTACCGTATTCCAAATGCAATTCTGATGGATTATATCAACAATTTTTGGCTGAAAATCCCGAAAATTTTTGGGTGATTTGTACCAAAACTGTCAGCAGAGTTTTCTCCGTTTTCGAGATTATCAGATTTCTGTCATTCTGTGTTTTTCCAATTTTGCTGATTAAGAAAAAGTTTGGATTAATTGCGAAATTGGTGATTTTCAATTTGATTCTGGAAATTTCCATAATGATTGTGAAATTGAACTTTTTTGTTTCAGAAAATGGTATAGTAACCCAGTGAGTTTTTTTGTTTTTTTTTTCAAAAAAGTGAAAAACTGTAATTAAAAAAAAATATTTTTTTGGATTACTGTAATACTTTTTTTTAATCCCAATACATTTTTCAAAAAAAAAATTCCAGGTCCAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>306 173 162 152 66 57 25 23 21 15</canonical_bands>
                <polymorphic_bands>306 183 173 152 66 57 25 23 15</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>100 91 86 82 71 66 58 57 39 37 30 29 29 26 25 23 23 22 21 20 15 14 14 9 8 5</canonical_bands>
                <polymorphic_bands>100 91 86 82 71 66 58 57 47 39 37 30 29 29 25 23 23 22 20 15 14 14 9 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGATCATAAAGATTGTATTGGATA</pcr_primer_p1>
		<pcr_primer_p2>GGAAAATGAAAAATGTGAATAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGATTTCCAATTGGATTCTATTTCTTCTGGCATTTTTGTCACTTTGGAATTCAAAAAATCGTTGTTTGAATTTCCAAAAATCCCTAAAATACTCAATTTATTGTTCGATATTCTTCTTTCTACACGTCTTTTCAGTTTTTCTATTCACATTTTTCATTTTCC</canonical_amplicon>
		<polymorphic_amplicon>TTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGATTTCCAATTGGATTCTATTTCTTCTGGCATTTTTGTCACTTTGGAATTCAAAAAATCGTTGTTTGAMTTTCCAAAAATCCCTAAAATACTCAATTTATTGTTCGATATTCTTCTTTCTACACGTCTTTTCAGTTTTTCTATTCACATTTTTCATTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39063</snp_id>
        <super_contig>c013401254.Contig1</super_contig>
        <contig_pos>15192</contig_pos>
        <strand></strand>
        <context>GTTGTTTGAM[T/A]TTCCAAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTCTTCTGGCATTTTTGTCACTTTGGAATTCAAAAAATCGTTGTTTGAA</left_flank>
        <right_flank>TTCCAAAAATCCCTAAAATACTCAATTTATTGTTCGATATTCTTCTTTCT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTAATATTTGTTATATGCCAAATTTTCTTGTTTTTCATGTGTTTTGACTAGGAAAACAAATCAGAAAACTTTTCGAAAATTTATTTTTCTTTTTTTTTCTCAAATTCAAAAAGCAAAAAAAAAATGGAGTTGGGCGTTTGGGATTATGCATATCTTGTCAAATATTTGAATTTAATTTTCGCATGTTTGGCATTCGTTACAAACCTAATCCATCTATTTTTCCTAACCAGAAATTGGAGGAATTGCCCGGATTTTGTATTTTTCGCAATAATTTGCATTTCCGATATCGTTTATCCATTTTTATTATTGATTGAAAAATGTATGCAGATTATAAAATATATTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGATTTCCAATTGGATTCTATTTCTTCTGGCATTTTTGTCACTTTGGAATTCAAAAAATCGTTGTTTGAATTTCCAAAAATCCCTAAAATACTCAATTTATTGTTCGATATTCTTCTTTCTACACGTCTTTTCAGTTTTTCTATTCACATTTTTCATTTTCCTTGAGTTACCGTATTCCAAATGCAATTCTGATGGATTATATCAACAATTTTTGGCTGAAAATCCCGAAAATTTTTGGGTGATTTGTACCAAAACTGTCAGCAGAGTTTTCTCCGTTTTCGAGATTATCAGATTTCTGTCATTCTGTGTTTTTCCAATTTTGCTGATTAAGAAAAAGTTTGGATTAATTGCGAAATTGGTGATTTTCAATTTGATTCTGGAAATTTCCATAATGATTGTGAAATTGAACTTTTTTGTTTCAGAAAATGGTATAGTAACCCAGTGAGTTTTTTTGTTTTTTTTTTCAAAAAAGTGAAAAACTGTAATTAAAAAAAAATATTTTTTTGGATTACTGTAATACTTTTTTTTAATCCCAATACATTTTTCAAAAAAAAAATTCCAGGTCCAGCT</canonical>
            <polymorphic>TTTTAATATTTGTTATATGCCAAATTTTCTTGTTTTTCATGTGTTTTGACTAGGAAAACAAATCAGAAAACTTTTCGAAAATTTATTTTTCTTTTTTTTTCTCAAATTCAAAAAGCAAAAAAAAAATGGAGTTGGGCGTTTGGGATTATGCATATCTTGTCAAATATTTGAATTTAATTTTCGCATGTTTGGCATTCGTTACAAACCTAATCCATCTATTTTTCCTAACCAGAAATTGGAGGAATTGCCCGGATTTTGTATTTTTCGCAATAATTTGCATTTCCGATATCGTTTATCCATTTTTATTATTGATTGAAAAATGTATGCAGATTATAAAATATATTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGATTTCCAATTGGATTCTATTTCTTCTGGCATTTTTGTCACTTTGGAATTCAAAAAATCGTTGTTTGAAWTTCCAAAAATCCCTAAAATACTCAATTTATTGTTCGATATTCTTCTTTCTACACGTCTTTTCAGTTTTTCTATTCACATTTTTCATTTTCCTTGAGTTACCGTATTCCAAATGCAATTCTGATGGATTATATCAACAATTTTTGGCTGAAAATCCCGAAAATTTTTGGGTGATTTGTACCAAAACTGTCAGCAGAGTTTTCTCCGTTTTCGAGATTATCAGATTTCTGTCATTCTGTGTTTTTCCAATTTTGCTGATTAAGAAAAAGTTTGGATTAATTGCGAAATTGGTGATTTTCAATTTGATTCTGGAAATTTCCATAATGATTGTGAAATTGAACTTTTTTGTTTCAGAAAATGGTATAGTAACCCAGTGAGTTTTTTTGTTTTTTTTTTCAAAAAAGTGAAAAACTGTAATTAAAAAAAAATATTTTTTTGGATTACTGTAATACTTTTTTTTAATCCCAATACATTTTTCAAAAAAAAAATTCCAGGTCCAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>306 173 162 152 66 57 25 22 21 16</canonical_bands>
                <polymorphic_bands>306 183 173 152 66 57 25 22 16</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>100 91 86 82 71 66 58 57 39 37 30 29 29 26 25 23 22 22 21 20 16 14 14 9 8 5</canonical_bands>
                <polymorphic_bands>100 91 86 82 71 66 58 57 47 39 37 30 29 29 25 23 22 22 20 16 14 14 9 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGATCATAAAGATTGTATTGGATA</pcr_primer_p1>
		<pcr_primer_p2>GGAAAATGAAAAATGTGAATAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGATTTCCAATTGGATTCTATTTCTTCTGGCATTTTTGTCACTTTGGAATTCAAAAAATCGTTGTTTGAATTTCCAAAAATCCCTAAAATACTCAATTTATTGTTCGATATTCTTCTTTCTACACGTCTTTTCAGTTTTTCTATTCACATTTTTCATTTTCC</canonical_amplicon>
		<polymorphic_amplicon>TTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGATTTCCAATTGGATTCTATTTCTTCTGGCATTTTTGTCACTTTGGAATTCAAAAAATCGTTGTTTGAAWTTCCAAAAATCCCTAAAATACTCAATTTATTGTTCGATATTCTTCTTTCTACACGTCTTTTCAGTTTTTCTATTCACATTTTTCATTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39064</snp_id>
        <super_contig>c013401254.Contig1</super_contig>
        <contig_pos>15211</contig_pos>
        <strand></strand>
        <context>ATCCCTAAAA[T/C]ACTCAATTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CACTTTGGAATTCAAAAAATCGTTGTTTGAATTTCCAAAAATCCCTAAAA</left_flank>
        <right_flank>ACTCAATTTATTGTTCGATATTCTTCTTTCTACACGTCTTTTCAGTTTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAATTTTCTTGTTTTTCATGTGTTTTGACTAGGAAAACAAATCAGAAAACTTTTCGAAAATTTATTTTTCTTTTTTTTTCTCAAATTCAAAAAGCAAAAAAAAAATGGAGTTGGGCGTTTGGGATTATGCATATCTTGTCAAATATTTGAATTTAATTTTCGCATGTTTGGCATTCGTTACAAACCTAATCCATCTATTTTTCCTAACCAGAAATTGGAGGAATTGCCCGGATTTTGTATTTTTCGCAATAATTTGCATTTCCGATATCGTTTATCCATTTTTATTATTGATTGAAAAATGTATGCAGATTATAAAATATATTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGATTTCCAATTGGATTCTATTTCTTCTGGCATTTTTGTCACTTTGGAATTCAAAAAATCGTTGTTTGAATTTCCAAAAATCCCTAAAATACTCAATTTATTGTTCGATATTCTTCTTTCTACACGTCTTTTCAGTTTTTCTATTCACATTTTTCATTTTCCTTGAGTTACCGTATTCCAAATGCAATTCTGATGGATTATATCAACAATTTTTGGCTGAAAATCCCGAAAATTTTTGGGTGATTTGTACCAAAACTGTCAGCAGAGTTTTCTCCGTTTTCGAGATTATCAGATTTCTGTCATTCTGTGTTTTTCCAATTTTGCTGATTAAGAAAAAGTTTGGATTAATTGCGAAATTGGTGATTTTCAATTTGATTCTGGAAATTTCCATAATGATTGTGAAATTGAACTTTTTTGTTTCAGAAAATGGTATAGTAACCCAGTGAGTTTTTTTGTTTTTTTTTTCAAAAAAGTGAAAAACTGTAATTAAAAAAAAATATTTTTTTGGATTACTGTAATACTTTTTTTTAATCCCAATACATTTTTCAAAAAAAAAATTCCAGGTCCAGCTCAGTATTACCAGTAGAAAT</canonical>
            <polymorphic>CCAAATTTTCTTGTTTTTCATGTGTTTTGACTAGGAAAACAAATCAGAAAACTTTTCGAAAATTTATTTTTCTTTTTTTTTCTCAAATTCAAAAAGCAAAAAAAAAATGGAGTTGGGCGTTTGGGATTATGCATATCTTGTCAAATATTTGAATTTAATTTTCGCATGTTTGGCATTCGTTACAAACCTAATCCATCTATTTTTCCTAACCAGAAATTGGAGGAATTGCCCGGATTTTGTATTTTTCGCAATAATTTGCATTTCCGATATCGTTTATCCATTTTTATTATTGATTGAAAAATGTATGCAGATTATAAAATATATTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGATTTCCAATTGGATTCTATTTCTTCTGGCATTTTTGTCACTTTGGAATTCAAAAAATCGTTGTTTGAATTTCCAAAAATCCCTAAAAYACTCAATTTATTGTTCGATATTCTTCTTTCTACACGTCTTTTCAGTTTTTCTATTCACATTTTTCATTTTCCTTGAGTTACCGTATTCCAAATGCAATTCTGATGGATTATATCAACAATTTTTGGCTGAAAATCCCGAAAATTTTTGGGTGATTTGTACCAAAACTGTCAGCAGAGTTTTCTCCGTTTTCGAGATTATCAGATTTCTGTCATTCTGTGTTTTTCCAATTTTGCTGATTAAGAAAAAGTTTGGATTAATTGCGAAATTGGTGATTTTCAATTTGATTCTGGAAATTTCCATAATGATTGTGAAATTGAACTTTTTTGTTTCAGAAAATGGTATAGTAACCCAGTGAGTTTTTTTGTTTTTTTTTTCAAAAAAGTGAAAAACTGTAATTAAAAAAAAATATTTTTTTGGATTACTGTAATACTTTTTTTTAATCCCAATACATTTTTCAAAAAAAAAATTCCAGGTCCAGCTCAGTATTACCAGTAGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGATCATAAAGATTGTATTGGATA</pcr_primer_p1>
		<pcr_primer_p2>GGAAAATGAAAAATGTGAATAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGATTTCCAATTGGATTCTATTTCTTCTGGCATTTTTGTCACTTTGGAATTCAAAAAATCGTTGTTTGAATTTCCAAAAATCCCTAAAATACTCAATTTATTGTTCGATATTCTTCTTTCTACACGTCTTTTCAGTTTTTCTATTCACATTTTTCATTTTCC</canonical_amplicon>
		<polymorphic_amplicon>TTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGATTTCCAATTGGATTCTATTTCTTCTGGCATTTTTGTCACTTTGGAATTCAAAAAATCGTTGTTTGAATTTCCAAAAATCCCTAAAAYACTCAATTTATTGTTCGATATTCTTCTTTCTACACGTCTTTTCAGTTTTTCTATTCACATTTTTCATTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39065</snp_id>
        <super_contig>c013401254.Contig1</super_contig>
        <contig_pos>15250</contig_pos>
        <strand></strand>
        <context>TCTACACGTC[T/C]TTTCAGTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATCCCTAAAATACTCAATTTATTGTTCGATATTCTTCTTTCTACACGTC</left_flank>
        <right_flank>TTTCAGTTTTTCTATTCACATTTTTCATTTTCCTTGAGTTACCGTATTCC</right_flank>
        <qual_score>32</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATCAGAAAACTTTTCGAAAATTTATTTTTCTTTTTTTTTCTCAAATTCAAAAAGCAAAAAAAAAATGGAGTTGGGCGTTTGGGATTATGCATATCTTGTCAAATATTTGAATTTAATTTTCGCATGTTTGGCATTCGTTACAAACCTAATCCATCTATTTTTCCTAACCAGAAATTGGAGGAATTGCCCGGATTTTGTATTTTTCGCAATAATTTGCATTTCCGATATCGTTTATCCATTTTTATTATTGATTGAAAAATGTATGCAGATTATAAAATATATTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGATTTCCAATTGGATTCTATTTCTTCTGGCATTTTTGTCACTTTGGAATTCAAAAAATCGTTGTTTGAATTTCCAAAAATCCCTAAAATACTCAATTTATTGTTCGATATTCTTCTTTCTACACGTCTTTTCAGTTTTTCTATTCACATTTTTCATTTTCCTTGAGTTACCGTATTCCAAATGCAATTCTGATGGATTATATCAACAATTTTTGGCTGAAAATCCCGAAAATTTTTGGGTGATTTGTACCAAAACTGTCAGCAGAGTTTTCTCCGTTTTCGAGATTATCAGATTTCTGTCATTCTGTGTTTTTCCAATTTTGCTGATTAAGAAAAAGTTTGGATTAATTGCGAAATTGGTGATTTTCAATTTGATTCTGGAAATTTCCATAATGATTGTGAAATTGAACTTTTTTGTTTCAGAAAATGGTATAGTAACCCAGTGAGTTTTTTTGTTTTTTTTTTCAAAAAAGTGAAAAACTGTAATTAAAAAAAAATATTTTTTTGGATTACTGTAATACTTTTTTTTAATCCCAATACATTTTTCAAAAAAAAAATTCCAGGTCCAGCTCAGTATTACCAGTAGAAATGATGCAGTTTTTTCAAATGATTGGCTCCAATTTTCGTCC</canonical>
            <polymorphic>CAAATCAGAAAACTTTTCGAAAATTTATTTTTCTTTTTTTTTCTCAAATTCAAAAAGCAAAAAAAAAATGGAGTTGGGCGTTTGGGATTATGCATATCTTGTCAAATATTTGAATTTAATTTTCGCATGTTTGGCATTCGTTACAAACCTAATCCATCTATTTTTCCTAACCAGAAATTGGAGGAATTGCCCGGATTTTGTATTTTTCGCAATAATTTGCATTTCCGATATCGTTTATCCATTTTTATTATTGATTGAAAAATGTATGCAGATTATAAAATATATTGATCATAAAGATTGTATTGGATATATCAATTTGATAGATATTGCTTTGAAAAATCTAATTTTACTTTTTGAACTCTTCTGCAACCAGATTTCCAATTGGATTCTATTTCTTCTGGCATTTTTGTCACTTTGGAATTCAAAAAATCGTTGTTTGAATTTCCAAAAATCCCTAAAATACTCAATTTATTGTTCGATATTCTTCTTTCTACACGTCYTTTCAGTTTTTCTATTCACATTTTTCATTTTCCTTGAGTTACCGTATTCCAAATGCAATTCTGATGGATTATATCAACAATTTTTGGCTGAAAATCCCGAAAATTTTTGGGTGATTTGTACCAAAACTGTCAGCAGAGTTTTCTCCGTTTTCGAGATTATCAGATTTCTGTCATTCTGTGTTTTTCCAATTTTGCTGATTAAGAAAAAGTTTGGATTAATTGCGAAATTGGTGATTTTCAATTTGATTCTGGAAATTTCCATAATGATTGTGAAATTGAACTTTTTTGTTTCAGAAAATGGTATAGTAACCCAGTGAGTTTTTTTGTTTTTTTTTTCAAAAAAGTGAAAAACTGTAATTAAAAAAAAATATTTTTTTGGATTACTGTAATACTTTTTTTTAATCCCAATACATTTTTCAAAAAAAAAATTCCAGGTCCAGCTCAGTATTACCAGTAGAAATGATGCAGTTTTTTCAAATGATTGGCTCCAATTTTCGTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTATTTCTTCTGGCATTTTT</pcr_primer_p1>
		<pcr_primer_p2>GACAGTTTTGGTACAAATCACC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ATTCTATTTCTTCTGGCATTTTTGTCACTTTGGAATTCAAAAAATCGTTGTTTGAATTTCCAAAAATCCCTAAAATACTCAATTTATTGTTCGATATTCTTCTTTCTACACGTCTTTTCAGTTTTTCTATTCACATTTTTCATTTTCCTTGAGTTACCGTATTCCAAATGCAATTCTGATGGATTATATCAACAATTTTTGGCTGAAAATCCCGAAAATTTTTGGGTGATTTGTACCAAAACTGTC</canonical_amplicon>
		<polymorphic_amplicon>ATTCTATTTCTTCTGGCATTTTTGTCACTTTGGAATTCAAAAAATCGTTGTTTGAATTTCCAAAAATCCCTAAAATACTCAATTTATTGTTCGATATTCTTCTTTCTACACGTCYTTTCAGTTTTTCTATTCACATTTTTCATTTTCCTTGAGTTACCGTATTCCAAATGCAATTCTGATGGATTATATCAACAATTTTTGGCTGAAAATCCCGAAAATTTTTGGGTGATTTGTACCAAAACTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39066</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>6513</contig_pos>
        <strand></strand>
        <context>CCTCATGAAT[T/C]ACMAAATGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAGAGAAGCATACCAACAGAAATGCAGAAAAACTACAGTACCTCATGAAT</left_flank>
        <right_flank>ACAAAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAA</right_flank>
        <qual_score>33</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTATTTTGTATAATATTTTGCAATTTTATGACCTAAAAGGGGCTCACACACATTTTATATAACCGTAAAAAATCCCATAACTTTTTCAATTAAAATTTTCTTGCCAATTTTTATCAGATGTGCCGAAAATGTCAAATTTAGCACTAATTTCAAAAATGCTGACTATCTCGATTGGCGGGATTTGTACAAAAAGTTGTCAATCACAAAAATGAAGCTCTAGCTTTTTGTAGGTCCTTAAAGTTGATTCCTTCTCTTGGGGTACTGTACCTAGGCTAAAATGGTCTAGAAGATTCTAGAACTTGATTAGCAAGAATTAATTATTCAATTGTCATTATTCAATTCAAAACTCAAAAAAACGTCTCCCAGGAAGTACAAAAATGGAAAATGAGAAAAAAAAGTGCCAAGTAAATGACATTTTCCAATTTCTAATGGGGTCATTCATGAGGCAGCAGAGAAGCATACCAACAGAAATGCAGAAAAACTACAGTACCTCATGAATTACAAAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGT</canonical>
            <polymorphic>GTATTTTGTATAATATTTTGCAATTTTATGACCTAAAAGGGGCTCACACACATTTTATATAACCGTAAAAAATCCCATAACTTTTTCAATTAAAATTTTCTTGCCAATTTTTATCAGATGTGCCGAAAATGTCAAATTTAGCACTAATTTCAAAAATGCTGACTATCTCGATTGGCGGGATTTGTACAAAAAGTTGTCAATCACAAAAATGAAGCTCTAGCTTTTTGTAGGTCCTTAAAGTTGATTCCTTCTCTTGGGGTACTGTACCTAGGCTAAAATGGTCTAGAAGATTCTAGAACTTGATTAGCAAGAATTAATTATTCAATTGTCATTATTCAATTCAAAACTCAAAAAAACGTCTCCCAGGAAGTACAAAAATGGAAAATGAGAAAAAAAAGTGCCAAGTAAATGACATTTTCCAATTTCTAATGGGGTCATTCATGAGGCAGCAGAGAAGCATACCAACAGAAATGCAGAAAAACTACAGTACCTCATGAATYACAAAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>278 166 126 85 83 76 66 29 21 15 14 12 11 8 6 4</canonical_bands>
                <polymorphic_bands>354 166 126 85 83 66 29 21 15 14 12 11 8 6 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGTACAAAAATGGAAAATGAGA</pcr_primer_p1>
		<pcr_primer_p2>GTTATGCGGTCAGGTGTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGTACAAAAATGGAAAATGAGAAAAAAAAGTGCCAAGTAAATGACATTTTCCAATTTCTAATGGGGTCATTCATGAGGCAGCAGAGAAGCATACCAACAGAAATGCAGAAAAACTACAGTACCTCATGAATTACAAAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAAC</canonical_amplicon>
		<polymorphic_amplicon>AAGTACAAAAATGGAAAATGAGAAAAAAAAGTGCCAAGTAAATGACATTTTCCAATTTCTAATGGGGTCATTCATGAGGCAGCAGAGAAGCATACCAACAGAAATGCAGAAAAACTACAGTACCTCATGAATYACAAAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39067</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>6516</contig_pos>
        <strand></strand>
        <context>CATGAATYAC[A/C]AAATGAAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAAGCATACCAACAGAAATGCAGAAAAACTACAGTACCTCATGAATTAC</left_flank>
        <right_flank>AAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAA</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTGTATAATATTTTGCAATTTTATGACCTAAAAGGGGCTCACACACATTTTATATAACCGTAAAAAATCCCATAACTTTTTCAATTAAAATTTTCTTGCCAATTTTTATCAGATGTGCCGAAAATGTCAAATTTAGCACTAATTTCAAAAATGCTGACTATCTCGATTGGCGGGATTTGTACAAAAAGTTGTCAATCACAAAAATGAAGCTCTAGCTTTTTGTAGGTCCTTAAAGTTGATTCCTTCTCTTGGGGTACTGTACCTAGGCTAAAATGGTCTAGAAGATTCTAGAACTTGATTAGCAAGAATTAATTATTCAATTGTCATTATTCAATTCAAAACTCAAAAAAACGTCTCCCAGGAAGTACAAAAATGGAAAATGAGAAAAAAAAGTGCCAAGTAAATGACATTTTCCAATTTCTAATGGGGTCATTCATGAGGCAGCAGAGAAGCATACCAACAGAAATGCAGAAAAACTACAGTACCTCATGAATTACAAAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAA</canonical>
            <polymorphic>TTTTGTATAATATTTTGCAATTTTATGACCTAAAAGGGGCTCACACACATTTTATATAACCGTAAAAAATCCCATAACTTTTTCAATTAAAATTTTCTTGCCAATTTTTATCAGATGTGCCGAAAATGTCAAATTTAGCACTAATTTCAAAAATGCTGACTATCTCGATTGGCGGGATTTGTACAAAAAGTTGTCAATCACAAAAATGAAGCTCTAGCTTTTTGTAGGTCCTTAAAGTTGATTCCTTCTCTTGGGGTACTGTACCTAGGCTAAAATGGTCTAGAAGATTCTAGAACTTGATTAGCAAGAATTAATTATTCAATTGTCATTATTCAATTCAAAACTCAAAAAAACGTCTCCCAGGAAGTACAAAAATGGAAAATGAGAAAAAAAAGTGCCAAGTAAATGACATTTTCCAATTTCTAATGGGGTCATTCATGAGGCAGCAGAGAAGCATACCAACAGAAATGCAGAAAAACTACAGTACCTCATGAATTACMAAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGTACAAAAATGGAAAATGAGA</pcr_primer_p1>
		<pcr_primer_p2>GTTATGCGGTCAGGTGTCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGTACAAAAATGGAAAATGAGAAAAAAAAGTGCCAAGTAAATGACATTTTCCAATTTCTAATGGGGTCATTCATGAGGCAGCAGAGAAGCATACCAACAGAAATGCAGAAAAACTACAGTACCTCATGAATTACAAAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAAC</canonical_amplicon>
		<polymorphic_amplicon>AAGTACAAAAATGGAAAATGAGAAAAAAAAGTGCCAAGTAAATGACATTTTCCAATTTCTAATGGGGTCATTCATGAGGCAGCAGAGAAGCATACCAACAGAAATGCAGAAAAACTACAGTACCTCATGAATTACMAAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39068</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>6565</contig_pos>
        <strand></strand>
        <context>AAGACAAAAT[A/C]AAGAGRCCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAAAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAAT</left_flank>
        <right_flank>AAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGAC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTATATAACCGTAAAAAATCCCATAACTTTTTCAATTAAAATTTTCTTGCCAATTTTTATCAGATGTGCCGAAAATGTCAAATTTAGCACTAATTTCAAAAATGCTGACTATCTCGATTGGCGGGATTTGTACAAAAAGTTGTCAATCACAAAAATGAAGCTCTAGCTTTTTGTAGGTCCTTAAAGTTGATTCCTTCTCTTGGGGTACTGTACCTAGGCTAAAATGGTCTAGAAGATTCTAGAACTTGATTAGCAAGAATTAATTATTCAATTGTCATTATTCAATTCAAAACTCAAAAAAACGTCTCCCAGGAAGTACAAAAATGGAAAATGAGAAAAAAAAGTGCCAAGTAAATGACATTTTCCAATTTCTAATGGGGTCATTCATGAGGCAGCAGAGAAGCATACCAACAGAAATGCAGAAAAACTACAGTACCTCATGAATTACAAAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTC</canonical>
            <polymorphic>TTTTATATAACCGTAAAAAATCCCATAACTTTTTCAATTAAAATTTTCTTGCCAATTTTTATCAGATGTGCCGAAAATGTCAAATTTAGCACTAATTTCAAAAATGCTGACTATCTCGATTGGCGGGATTTGTACAAAAAGTTGTCAATCACAAAAATGAAGCTCTAGCTTTTTGTAGGTCCTTAAAGTTGATTCCTTCTCTTGGGGTACTGTACCTAGGCTAAAATGGTCTAGAAGATTCTAGAACTTGATTAGCAAGAATTAATTATTCAATTGTCATTATTCAATTCAAAACTCAAAAAAACGTCTCCCAGGAAGTACAAAAATGGAAAATGAGAAAAAAAAGTGCCAAGTAAATGACATTTTCCAATTTCTAATGGGGTCATTCATGAGGCAGCAGAGAAGCATACCAACAGAAATGCAGAAAAACTACAGTACCTCATGAATTACAAAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATMAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAGAAAAACTACAGTACCTCAT</pcr_primer_p1>
		<pcr_primer_p2>AGACTAATCGCCTCCTATGTG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GCAGAAAAACTACAGTACCTCATGAATTACAAAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCT</canonical_amplicon>
		<polymorphic_amplicon>GCAGAAAAACTACAGTACCTCATGAATTACAAAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATMAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39069</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>6571</contig_pos>
        <strand></strand>
        <context>AAATMAAGAG[G/A]CCAACTAAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAG</left_flank>
        <right_flank>CCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAACCGTAAAAAATCCCATAACTTTTTCAATTAAAATTTTCTTGCCAATTTTTATCAGATGTGCCGAAAATGTCAAATTTAGCACTAATTTCAAAAATGCTGACTATCTCGATTGGCGGGATTTGTACAAAAAGTTGTCAATCACAAAAATGAAGCTCTAGCTTTTTGTAGGTCCTTAAAGTTGATTCCTTCTCTTGGGGTACTGTACCTAGGCTAAAATGGTCTAGAAGATTCTAGAACTTGATTAGCAAGAATTAATTATTCAATTGTCATTATTCAATTCAAAACTCAAAAAAACGTCTCCCAGGAAGTACAAAAATGGAAAATGAGAAAAAAAAGTGCCAAGTAAATGACATTTTCCAATTTCTAATGGGGTCATTCATGAGGCAGCAGAGAAGCATACCAACAGAAATGCAGAAAAACTACAGTACCTCATGAATTACAAAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTAT</canonical>
            <polymorphic>ATAACCGTAAAAAATCCCATAACTTTTTCAATTAAAATTTTCTTGCCAATTTTTATCAGATGTGCCGAAAATGTCAAATTTAGCACTAATTTCAAAAATGCTGACTATCTCGATTGGCGGGATTTGTACAAAAAGTTGTCAATCACAAAAATGAAGCTCTAGCTTTTTGTAGGTCCTTAAAGTTGATTCCTTCTCTTGGGGTACTGTACCTAGGCTAAAATGGTCTAGAAGATTCTAGAACTTGATTAGCAAGAATTAATTATTCAATTGTCATTATTCAATTCAAAACTCAAAAAAACGTCTCCCAGGAAGTACAAAAATGGAAAATGAGAAAAAAAAGTGCCAAGTAAATGACATTTTCCAATTTCTAATGGGGTCATTCATGAGGCAGCAGAGAAGCATACCAACAGAAATGCAGAAAAACTACAGTACCTCATGAATTACAAAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAGRCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>420 261 156 80 52 25 6</canonical_bands>
                <polymorphic_bands>445 261 156 80 52 6</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGAAATGACAGAAGGAAAGTA</pcr_primer_p1>
		<pcr_primer_p2>ATTCCCCATTTTAGAATCTACC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAAT</canonical_amplicon>
		<polymorphic_amplicon>AATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAGRCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39070</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>6646</contig_pos>
        <strand></strand>
        <context>GACACACTTG[T/C]GCAGTGCGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTG</left_flank>
        <right_flank>GCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTTAGCACTAATTTCAAAAATGCTGACTATCTCGATTGGCGGGATTTGTACAAAAAGTTGTCAATCACAAAAATGAAGCTCTAGCTTTTTGTAGGTCCTTAAAGTTGATTCCTTCTCTTGGGGTACTGTACCTAGGCTAAAATGGTCTAGAAGATTCTAGAACTTGATTAGCAAGAATTAATTATTCAATTGTCATTATTCAATTCAAAACTCAAAAAAACGTCTCCCAGGAAGTACAAAAATGGAAAATGAGAAAAAAAAGTGCCAAGTAAATGACATTTTCCAATTTCTAATGGGGTCATTCATGAGGCAGCAGAGAAGCATACCAACAGAAATGCAGAAAAACTACAGTACCTCATGAATTACAAAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCA</canonical>
            <polymorphic>AAATTTAGCACTAATTTCAAAAATGCTGACTATCTCGATTGGCGGGATTTGTACAAAAAGTTGTCAATCACAAAAATGAAGCTCTAGCTTTTTGTAGGTCCTTAAAGTTGATTCCTTCTCTTGGGGTACTGTACCTAGGCTAAAATGGTCTAGAAGATTCTAGAACTTGATTAGCAAGAATTAATTATTCAATTGTCATTATTCAATTCAAAACTCAAAAAAACGTCTCCCAGGAAGTACAAAAATGGAAAATGAGAAAAAAAAGTGCCAAGTAAATGACATTTTCCAATTTCTAATGGGGTCATTCATGAGGCAGCAGAGAAGCATACCAACAGAAATGCAGAAAAACTACAGTACCTCATGAATTACAAAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGYGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACNNNNGTG</site>
                <isoschizomers>
                    <enzyme>AleI</enzyme>
                    <enzyme>OliI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>431 340 97 68 64</canonical_bands>
                <polymorphic_bands>431 340 132 97</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>197 140 133 73 66 60 54 52 52 29 26 23 20 17 11 10 10 7 6 5 3 2 2 2</canonical_bands>
                <polymorphic_bands>197 140 133 73 66 60 54 52 52 29 26 23 20 17 11 11 10 10 7 3 2 2 2</polymorphic_bands>
            </assay>
            <assay>
                <site>CAYNNNNRTG</site>
                <isoschizomers>
                    <enzyme>MslI</enzyme>
                    <enzyme>SmiMI</enzyme>
                </isoschizomers>
                <canonical_bands>504 423 73</canonical_bands>
                <polymorphic_bands>927 73</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGAAATGACAGAAGGAAAGTA</pcr_primer_p1>
		<pcr_primer_p2>ATTCCCCATTTTAGAATCTACC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAAT</canonical_amplicon>
		<polymorphic_amplicon>AATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGYGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39071</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>6713</contig_pos>
        <strand></strand>
        <context>GATCACCCAT[T/G]TGCACATAGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCAT</left_flank>
        <right_flank>TGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACAAAAATGAAGCTCTAGCTTTTTGTAGGTCCTTAAAGTTGATTCCTTCTCTTGGGGTACTGTACCTAGGCTAAAATGGTCTAGAAGATTCTAGAACTTGATTAGCAAGAATTAATTATTCAATTGTCATTATTCAATTCAAAACTCAAAAAAACGTCTCCCAGGAAGTACAAAAATGGAAAATGAGAAAAAAAAGTGCCAAGTAAATGACATTTTCCAATTTCTAATGGGGTCATTCATGAGGCAGCAGAGAAGCATACCAACAGAAATGCAGAAAAACTACAGTACCTCATGAATTACAAAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCAGTCGATCACTTTTTCATAAATTCTACAGGAACCGAGATAAATCGACTCAAAATTAGGAGGGCCTTAT</canonical>
            <polymorphic>TCACAAAAATGAAGCTCTAGCTTTTTGTAGGTCCTTAAAGTTGATTCCTTCTCTTGGGGTACTGTACCTAGGCTAAAATGGTCTAGAAGATTCTAGAACTTGATTAGCAAGAATTAATTATTCAATTGTCATTATTCAATTCAAAACTCAAAAAAACGTCTCCCAGGAAGTACAAAAATGGAAAATGAGAAAAAAAAGTGCCAAGTAAATGACATTTTCCAATTTCTAATGGGGTCATTCATGAGGCAGCAGAGAAGCATACCAACAGAAATGCAGAAAAACTACAGTACCTCATGAATTACAAAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATKTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCAGTCGATCACTTTTTCATAAATTCTACAGGAACCGAGATAAATCGACTCAAAATTAGGAGGGCCTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCATAACAATATGACACACTT</pcr_primer_p1>
		<pcr_primer_p2>CCAAAGAAGATAAGATTTACTGAGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGG</canonical_amplicon>
		<polymorphic_amplicon>CGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATKTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39072</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>6768</contig_pos>
        <strand></strand>
        <context>GGAATCCATG[G/A]TTAGGGGTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATG</left_flank>
        <right_flank>TTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGGTACTGTACCTAGGCTAAAATGGTCTAGAAGATTCTAGAACTTGATTAGCAAGAATTAATTATTCAATTGTCATTATTCAATTCAAAACTCAAAAAAACGTCTCCCAGGAAGTACAAAAATGGAAAATGAGAAAAAAAAGTGCCAAGTAAATGACATTTTCCAATTTCTAATGGGGTCATTCATGAGGCAGCAGAGAAGCATACCAACAGAAATGCAGAAAAACTACAGTACCTCATGAATTACAAAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCAGTCGATCACTTTTTCATAAATTCTACAGGAACCGAGATAAATCGACTCAAAATTAGGAGGGCCTTATGGTAGTCGACCTTCCCGACTCCATGCTCCAGGTGATGTGAAGAAAGAAACAGATA</canonical>
            <polymorphic>GGGGTACTGTACCTAGGCTAAAATGGTCTAGAAGATTCTAGAACTTGATTAGCAAGAATTAATTATTCAATTGTCATTATTCAATTCAAAACTCAAAAAAACGTCTCCCAGGAAGTACAAAAATGGAAAATGAGAAAAAAAAGTGCCAAGTAAATGACATTTTCCAATTTCTAATGGGGTCATTCATGAGGCAGCAGAGAAGCATACCAACAGAAATGCAGAAAAACTACAGTACCTCATGAATTACAAAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGRTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCAGTCGATCACTTTTTCATAAATTCTACAGGAACCGAGATAAATCGACTCAAAATTAGGAGGGCCTTATGGTAGTCGACCTTCCCGACTCCATGCTCCAGGTGATGTGAAGAAAGAAACAGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>388 276 229 95 12</canonical_bands>
                <polymorphic_bands>664 229 95 12</polymorphic_bands>
            </assay>
            <assay>
                <site>CCATGG</site>
                <isoschizomers>
                    <enzyme>Bsp19I</enzyme>
                    <enzyme>NcoI</enzyme>
                </isoschizomers>
                <canonical_bands>495 276 229</canonical_bands>
                <polymorphic_bands>771 229</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>483 276 229 12</canonical_bands>
                <polymorphic_bands>759 229 12</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>495 276 229</canonical_bands>
                <polymorphic_bands>771 229</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGCATAACAATATGACACACTT</pcr_primer_p1>
		<pcr_primer_p2>CCAAAGAAGATAAGATTTACTGAGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGG</canonical_amplicon>
		<polymorphic_amplicon>CGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGRTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39073</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>6784</contig_pos>
        <strand></strand>
        <context>GGTTCTAGTG[G/C]AATAATTAGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTG</left_flank>
        <right_flank>AATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTAAAATGGTCTAGAAGATTCTAGAACTTGATTAGCAAGAATTAATTATTCAATTGTCATTATTCAATTCAAAACTCAAAAAAACGTCTCCCAGGAAGTACAAAAATGGAAAATGAGAAAAAAAAGTGCCAAGTAAATGACATTTTCCAATTTCTAATGGGGTCATTCATGAGGCAGCAGAGAAGCATACCAACAGAAATGCAGAAAAACTACAGTACCTCATGAATTACAAAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCAGTCGATCACTTTTTCATAAATTCTACAGGAACCGAGATAAATCGACTCAAAATTAGGAGGGCCTTATGGTAGTCGACCTTCCCGACTCCATGCTCCAGGTGATGTGAAGAAAGAAACAGATAATCAAATTTGTAACCA</canonical>
            <polymorphic>GCTAAAATGGTCTAGAAGATTCTAGAACTTGATTAGCAAGAATTAATTATTCAATTGTCATTATTCAATTCAAAACTCAAAAAAACGTCTCCCAGGAAGTACAAAAATGGAAAATGAGAAAAAAAAGTGCCAAGTAAATGACATTTTCCAATTTCTAATGGGGTCATTCATGAGGCAGCAGAGAAGCATACCAACAGAAATGCAGAAAAACTACAGTACCTCATGAATTACAAAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGSAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCAGTCGATCACTTTTTCATAAATTCTACAGGAACCGAGATAAATCGACTCAAAATTAGGAGGGCCTTATGGTAGTCGACCTTCCCGACTCCATGCTCCAGGTGATGTGAAGAAAGAAACAGATAATCAAATTTGTAACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGCATAACAATATGACACACTT</pcr_primer_p1>
		<pcr_primer_p2>CCAAAGAAGATAAGATTTACTGAGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGG</canonical_amplicon>
		<polymorphic_amplicon>CGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGSAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39074</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>6800</contig_pos>
        <strand></strand>
        <context>TTAGGTAGTT[C/A]GGAATTTCCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTT</left_flank>
        <right_flank>GGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGATTCTAGAACTTGATTAGCAAGAATTAATTATTCAATTGTCATTATTCAATTCAAAACTCAAAAAAACGTCTCCCAGGAAGTACAAAAATGGAAAATGAGAAAAAAAAGTGCCAAGTAAATGACATTTTCCAATTTCTAATGGGGTCATTCATGAGGCAGCAGAGAAGCATACCAACAGAAATGCAGAAAAACTACAGTACCTCATGAATTACAAAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCAGTCGATCACTTTTTCATAAATTCTACAGGAACCGAGATAAATCGACTCAAAATTAGGAGGGCCTTATGGTAGTCGACCTTCCCGACTCCATGCTCCAGGTGATGTGAAGAAAGAAACAGATAATCAAATTTGTAACCAACAACAAATTACATAC</canonical>
            <polymorphic>AGATTCTAGAACTTGATTAGCAAGAATTAATTATTCAATTGTCATTATTCAATTCAAAACTCAAAAAAACGTCTCCCAGGAAGTACAAAAATGGAAAATGAGAAAAAAAAGTGCCAAGTAAATGACATTTTCCAATTTCTAATGGGGTCATTCATGAGGCAGCAGAGAAGCATACCAACAGAAATGCAGAAAAACTACAGTACCTCATGAATTACAAAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTMGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCAGTCGATCACTTTTTCATAAATTCTACAGGAACCGAGATAAATCGACTCAAAATTAGGAGGGCCTTATGGTAGTCGACCTTCCCGACTCCATGCTCCAGGTGATGTGAAGAAAGAAACAGATAATCAAATTTGTAACCAACAACAAATTACATAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>501 404 74 8 8 5</canonical_bands>
                <polymorphic_bands>509 404 74 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGCATAACAATATGACACACTT</pcr_primer_p1>
		<pcr_primer_p2>CCAAAGAAGATAAGATTTACTGAGA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGG</canonical_amplicon>
		<polymorphic_amplicon>CGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTMGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39075</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>6869</contig_pos>
        <strand></strand>
        <context>TCTTCTTTGG[G/T]ATCTCTTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGG</left_flank>
        <right_flank>ATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTCTCCCAGGAAGTACAAAAATGGAAAATGAGAAAAAAAAGTGCCAAGTAAATGACATTTTCCAATTTCTAATGGGGTCATTCATGAGGCAGCAGAGAAGCATACCAACAGAAATGCAGAAAAACTACAGTACCTCATGAATTACAAAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCAGTCGATCACTTTTTCATAAATTCTACAGGAACCGAGATAAATCGACTCAAAATTAGGAGGGCCTTATGGTAGTCGACCTTCCCGACTCCATGCTCCAGGTGATGTGAAGAAAGAAACAGATAATCAAATTTGTAACCAACAACAAATTACATACAAATTGTGTTCATATTTTTAATTAGAGCTCAAATCTAAATCCTTTTTGCCAATTTTAATGGTCCCCGCT</canonical>
            <polymorphic>CGTCTCCCAGGAAGTACAAAAATGGAAAATGAGAAAAAAAAGTGCCAAGTAAATGACATTTTCCAATTTCTAATGGGGTCATTCATGAGGCAGCAGAGAAGCATACCAACAGAAATGCAGAAAAACTACAGTACCTCATGAATTACAAAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGGKATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCAGTCGATCACTTTTTCATAAATTCTACAGGAACCGAGATAAATCGACTCAAAATTAGGAGGGCCTTATGGTAGTCGACCTTCCCGACTCCATGCTCCAGGTGATGTGAAGAAAGAAACAGATAATCAAATTTGTAACCAACAACAAATTACATACAAATTGTGTTCATATTTTTAATTAGAGCTCAAATCTAAATCCTTTTTGCCAATTTTAATGGTCCCCGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>333 258 220 166 23</canonical_bands>
                <polymorphic_bands>333 258 220 189</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCGGAAACTAATATTTGGAAGAT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTTCTTCACATCACCTG</pcr_primer_p2>
		<pcr_amplicon_size>448</pcr_amplicon_size>
		<canonical_amplicon>TCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCAGTCGATCACTTTTTCATAAATTCTACAGGAACCGAGATAAATCGACTCAAAATTAGGAGGGCCTTATGGTAGTCGACCTTCCCGACTCCATGCTCCAGGTGATGTGAAGAAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>TCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGGKATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCAGTCGATCACTTTTTCATAAATTCTACAGGAACCGAGATAAATCGACTCAAAATTAGGAGGGCCTTATGGTAGTCGACCTTCCCGACTCCATGCTCCAGGTGATGTGAAGAAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39076</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>6966</contig_pos>
        <strand></strand>
        <context>ttgttaataa[G/C]cactttttta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAA</left_flank>
        <right_flank>CACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGCATACCAACAGAAATGCAGAAAAACTACAGTACCTCATGAATTACAAAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCAGTCGATCACTTTTTCATAAATTCTACAGGAACCGAGATAAATCGACTCAAAATTAGGAGGGCCTTATGGTAGTCGACCTTCCCGACTCCATGCTCCAGGTGATGTGAAGAAAGAAACAGATAATCAAATTTGTAACCAACAACAAATTACATACAAATTGTGTTCATATTTTTAATTAGAGCTCAAATCTAAATCCTTTTTGCCAATTTTAATGGTCCCCGCTTTTGGAGACGTTATTCGGACAGATGGTCCGTAGGTGTGCACAATAATTACGCCACCCCTAAACCAGCACTTTCAGCTCATTTATCTCAACTCCTGTA</canonical>
            <polymorphic>GAAGCATACCAACAGAAATGCAGAAAAACTACAGTACCTCATGAATTACAAAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAASCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCAGTCGATCACTTTTTCATAAATTCTACAGGAACCGAGATAAATCGACTCAAAATTAGGAGGGCCTTATGGTAGTCGACCTTCCCGACTCCATGCTCCAGGTGATGTGAAGAAAGAAACAGATAATCAAATTTGTAACCAACAACAAATTACATACAAATTGTGTTCATATTTTTAATTAGAGCTCAAATCTAAATCCTTTTTGCCAATTTTAATGGTCCCCGCTTTTGGAGACGTTATTCGGACAGATGGTCCGTAGGTGTGCACAATAATTACGCCACCCCTAAACCAGCACTTTCAGCTCATTTATCTCAACTCCTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGGTCTCAGTAAATCTTATCTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTTCTTCACATCACCTG</pcr_primer_p2>
		<pcr_amplicon_size>423</pcr_amplicon_size>
		<canonical_amplicon>CGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCAGTCGATCACTTTTTCATAAATTCTACAGGAACCGAGATAAATCGACTCAAAATTAGGAGGGCCTTATGGTAGTCGACCTTCCCGACTCCATGCTCCAGGTGATGTGAAGAAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>CGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAASCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCAGTCGATCACTTTTTCATAAATTCTACAGGAACCGAGATAAATCGACTCAAAATTAGGAGGGCCTTATGGTAGTCGACCTTCCCGACTCCATGCTCCAGGTGATGTGAAGAAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39077</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>6978</contig_pos>
        <strand></strand>
        <context>acttttttat[T/A]tgttgaacaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTAT</left_flank>
        <right_flank>TGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCAT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAAATGCAGAAAAACTACAGTACCTCATGAATTACAAAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCAGTCGATCACTTTTTCATAAATTCTACAGGAACCGAGATAAATCGACTCAAAATTAGGAGGGCCTTATGGTAGTCGACCTTCCCGACTCCATGCTCCAGGTGATGTGAAGAAAGAAACAGATAATCAAATTTGTAACCAACAACAAATTACATACAAATTGTGTTCATATTTTTAATTAGAGCTCAAATCTAAATCCTTTTTGCCAATTTTAATGGTCCCCGCTTTTGGAGACGTTATTCGGACAGATGGTCCGTAGGTGTGCACAATAATTACGCCACCCCTAAACCAGCACTTTCAGCTCATTTATCTCAACTCCTGTAAGAGATATGAAA</canonical>
            <polymorphic>CAGAAATGCAGAAAAACTACAGTACCTCATGAATTACAAAATGAAATGACAGAAGGAAAGTACTGTAGCTACTCACAAGACAAAATAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATWTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCAGTCGATCACTTTTTCATAAATTCTACAGGAACCGAGATAAATCGACTCAAAATTAGGAGGGCCTTATGGTAGTCGACCTTCCCGACTCCATGCTCCAGGTGATGTGAAGAAAGAAACAGATAATCAAATTTGTAACCAACAACAAATTACATACAAATTGTGTTCATATTTTTAATTAGAGCTCAAATCTAAATCCTTTTTGCCAATTTTAATGGTCCCCGCTTTTGGAGACGTTATTCGGACAGATGGTCCGTAGGTGTGCACAATAATTACGCCACCCCTAAACCAGCACTTTCAGCTCATTTATCTCAACTCCTGTAAGAGATATGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGGTCTCAGTAAATCTTATCTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTTCTTCACATCACCTG</pcr_primer_p2>
		<pcr_amplicon_size>423</pcr_amplicon_size>
		<canonical_amplicon>CGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCAGTCGATCACTTTTTCATAAATTCTACAGGAACCGAGATAAATCGACTCAAAATTAGGAGGGCCTTATGGTAGTCGACCTTCCCGACTCCATGCTCCAGGTGATGTGAAGAAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>CGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATWTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCAGTCGATCACTTTTTCATAAATTCTACAGGAACCGAGATAAATCGACTCAAAATTAGGAGGGCCTTATGGTAGTCGACCTTCCCGACTCCATGCTCCAGGTGATGTGAAGAAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39078</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>7042</contig_pos>
        <strand></strand>
        <context>GAATGTTCCA[T/C]GGAGCACACA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCA</left_flank>
        <right_flank>GGAGCACACATTTCTTTGTTCTCCTTTATCTCAATTCCGGTAACAGATAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAGCTACTCACAAGACAAAATAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCAGTCGATCACTTTTTCATAAATTCTACAGGAACCGAGATAAATCGACTCAAAATTAGGAGGGCCTTATGGTAGTCGACCTTCCCGACTCCATGCTCCAGGTGATGTGAAGAAAGAAACAGATAATCAAATTTGTAACCAACAACAAATTACATACAAATTGTGTTCATATTTTTAATTAGAGCTCAAATCTAAATCCTTTTTGCCAATTTTAATGGTCCCCGCTTTTGGAGACGTTATTCGGACAGATGGTCCGTAGGTGTGCACAATAATTACGCCACCCCTAAACCAGCACTTTCAGCTCATTTATCTCAACTCCTGTAAGAGATATGAAATTTTTTTTAACCAATAAAATGTTTATCATAATATTATCAATGTTTTATCAGTTGACTACATTTT</canonical>
            <polymorphic>GTAGCTACTCACAAGACAAAATAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCAYGGAGCACACATTTCTTTGTTCTCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCAGTCGATCACTTTTTCATAAATTCTACAGGAACCGAGATAAATCGACTCAAAATTAGGAGGGCCTTATGGTAGTCGACCTTCCCGACTCCATGCTCCAGGTGATGTGAAGAAAGAAACAGATAATCAAATTTGTAACCAACAACAAATTACATACAAATTGTGTTCATATTTTTAATTAGAGCTCAAATCTAAATCCTTTTTGCCAATTTTAATGGTCCCCGCTTTTGGAGACGTTATTCGGACAGATGGTCCGTAGGTGTGCACAATAATTACGCCACCCCTAAACCAGCACTTTCAGCTCATTTATCTCAACTCCTGTAAGAGATATGAAATTTTTTTTAACCAATAAAATGTTTATCATAATATTATCAATGTTTTATCAGTTGACTACATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCATGG</site>
                <isoschizomers>
                    <enzyme>Bsp19I</enzyme>
                    <enzyme>NcoI</enzyme>
                </isoschizomers>
                <canonical_bands>503 276 221</canonical_bands>
                <polymorphic_bands>779 221</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>503 276 221</canonical_bands>
                <polymorphic_bands>779 221</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>503 276 221</canonical_bands>
                <polymorphic_bands>779 221</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>307 276 195 180 42</canonical_bands>
                <polymorphic_bands>471 307 180 42</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGGTCTCAGTAAATCTTATCTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTTCTTCACATCACCTG</pcr_primer_p2>
		<pcr_amplicon_size>423</pcr_amplicon_size>
		<canonical_amplicon>CGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCAGTCGATCACTTTTTCATAAATTCTACAGGAACCGAGATAAATCGACTCAAAATTAGGAGGGCCTTATGGTAGTCGACCTTCCCGACTCCATGCTCCAGGTGATGTGAAGAAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>CGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCAYGGAGCACACATTTCTTTGTTCTCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCAGTCGATCACTTTTTCATAAATTCTACAGGAACCGAGATAAATCGACTCAAAATTAGGAGGGCCTTATGGTAGTCGACCTTCCCGACTCCATGCTCCAGGTGATGTGAAGAAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39079</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>7063</contig_pos>
        <strand></strand>
        <context>TTTCTTTGTT[C/A]TCCtttatct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTT</left_flank>
        <right_flank>TCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGA</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCAGTCGATCACTTTTTCATAAATTCTACAGGAACCGAGATAAATCGACTCAAAATTAGGAGGGCCTTATGGTAGTCGACCTTCCCGACTCCATGCTCCAGGTGATGTGAAGAAAGAAACAGATAATCAAATTTGTAACCAACAACAAATTACATACAAATTGTGTTCATATTTTTAATTAGAGCTCAAATCTAAATCCTTTTTGCCAATTTTAATGGTCCCCGCTTTTGGAGACGTTATTCGGACAGATGGTCCGTAGGTGTGCACAATAATTACGCCACCCCTAAACCAGCACTTTCAGCTCATTTATCTCAACTCCTGTAAGAGATATGAAATTTTTTTTAACCAATAAAATGTTTATCATAATATTATCAATGTTTTATCAGTTGACTACATTTTAATATCTTTGAGAAACCGAGA</canonical>
            <polymorphic>TAAAGAGGCCAACTAAACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTMTCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCAGTCGATCACTTTTTCATAAATTCTACAGGAACCGAGATAAATCGACTCAAAATTAGGAGGGCCTTATGGTAGTCGACCTTCCCGACTCCATGCTCCAGGTGATGTGAAGAAAGAAACAGATAATCAAATTTGTAACCAACAACAAATTACATACAAATTGTGTTCATATTTTTAATTAGAGCTCAAATCTAAATCCTTTTTGCCAATTTTAATGGTCCCCGCTTTTGGAGACGTTATTCGGACAGATGGTCCGTAGGTGTGCACAATAATTACGCCACCCCTAAACCAGCACTTTCAGCTCATTTATCTCAACTCCTGTAAGAGATATGAAATTTTTTTTAACCAATAAAATGTTTATCATAATATTATCAATGTTTTATCAGTTGACTACATTTTAATATCTTTGAGAAACCGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGGGTCTCAGTAAATCTTATCTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTTCTTCACATCACCTG</pcr_primer_p2>
		<pcr_amplicon_size>423</pcr_amplicon_size>
		<canonical_amplicon>CGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCAGTCGATCACTTTTTCATAAATTCTACAGGAACCGAGATAAATCGACTCAAAATTAGGAGGGCCTTATGGTAGTCGACCTTCCCGACTCCATGCTCCAGGTGATGTGAAGAAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>CGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTMTCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCAGTCGATCACTTTTTCATAAATTCTACAGGAACCGAGATAAATCGACTCAAAATTAGGAGGGCCTTATGGTAGTCGACCTTCCCGACTCCATGCTCCAGGTGATGTGAAGAAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39080</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>7078</contig_pos>
        <strand></strand>
        <context>ttatctcaat[T/C]ccggtaacag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTATCTCAAT</left_flank>
        <right_flank>CCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTT</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCAGTCGATCACTTTTTCATAAATTCTACAGGAACCGAGATAAATCGACTCAAAATTAGGAGGGCCTTATGGTAGTCGACCTTCCCGACTCCATGCTCCAGGTGATGTGAAGAAAGAAACAGATAATCAAATTTGTAACCAACAACAAATTACATACAAATTGTGTTCATATTTTTAATTAGAGCTCAAATCTAAATCCTTTTTGCCAATTTTAATGGTCCCCGCTTTTGGAGACGTTATTCGGACAGATGGTCCGTAGGTGTGCACAATAATTACGCCACCCCTAAACCAGCACTTTCAGCTCATTTATCTCAACTCCTGTAAGAGATATGAAATTTTTTTTAACCAATAAAATGTTTATCATAATATTATCAATGTTTTATCAGTTGACTACATTTTAATATCTTTGAGAAACCGAGATAAATTGGCTCAAAT</canonical>
            <polymorphic>AACTGCATGGATTGGGAACGCCCATCACCTCCTAGACACCTGACCGCATAACAATATGACACACTTGTGCAGTGCGGTAACAGACATCCCAGACGAGACAGTGTGGAAAAGAGGAGAGAGCACGGATCACCCATTTGCACATAGGAGGCGATTAGTCTTCTGGGTAGATTCTAAAATGGGGAATCCATGGTTAGGGGTTCTAGTGGAATAATTAGGTAGTTCGGAATTTCCGAGACTCGGAAACTAATATTTGGAAGATTGCGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTATCTCAATYCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCAGTCGATCACTTTTTCATAAATTCTACAGGAACCGAGATAAATCGACTCAAAATTAGGAGGGCCTTATGGTAGTCGACCTTCCCGACTCCATGCTCCAGGTGATGTGAAGAAAGAAACAGATAATCAAATTTGTAACCAACAACAAATTACATACAAATTGTGTTCATATTTTTAATTAGAGCTCAAATCTAAATCCTTTTTGCCAATTTTAATGGTCCCCGCTTTTGGAGACGTTATTCGGACAGATGGTCCGTAGGTGTGCACAATAATTACGCCACCCCTAAACCAGCACTTTCAGCTCATTTATCTCAACTCCTGTAAGAGATATGAAATTTTTTTTAACCAATAAAATGTTTATCATAATATTATCAATGTTTTATCAGTTGACTACATTTTAATATCTTTGAGAAACCGAGATAAATTGGCTCAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>209 146 126 90 89 76 63 63 32 31 18 18 15 13 11</canonical_bands>
                <polymorphic_bands>236 209 126 89 76 63 63 32 31 18 18 15 13 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGGGTCTCAGTAAATCTTATCTT</pcr_primer_p1>
		<pcr_primer_p2>TTTCTTTCTTCACATCACCTG</pcr_primer_p2>
		<pcr_amplicon_size>423</pcr_amplicon_size>
		<canonical_amplicon>CGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTATCTCAATTCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCAGTCGATCACTTTTTCATAAATTCTACAGGAACCGAGATAAATCGACTCAAAATTAGGAGGGCCTTATGGTAGTCGACCTTCCCGACTCCATGCTCCAGGTGATGTGAAGAAAGAAA</canonical_amplicon>
		<polymorphic_amplicon>CGGGTCTCAGTAAATCTTATCTTCTTTGGGATCTCTTTTTCATAGTTTATCTGATCGGACAGAAATATCAAAAAGTGGTCAACTGACAAAATTCTTATCATAACATCAGCAACATTTTGTTAATAAGCACTTTTTTATTTGTTGAACAAGAGCTGAGATATAGCAAATCAAAGTTAAGGGGTGCGTCATCTCGAATGTTCCATGGAGCACACATTTCTTTGTTCTCCTTTATCTCAATYCCGGTAACAGATATCTAAAAACGTTTAACTAACGAAATGTTTGTGGTGTTATGAGAAACATTTTATCAGTCGATCACTTTTTCATAAATTCTACAGGAACCGAGATAAATCGACTCAAAATTAGGAGGGCCTTATGGTAGTCGACCTTCCCGACTCCATGCTCCAGGTGATGTGAAGAAAGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39081</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>39277</contig_pos>
        <strand>+</strand>
        <context>GTTTTGACTR[A/G]TATTGGCATC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTA</left_flank>
        <right_flank>TATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTGATATCTTTTACAGAAGCTGAAAGTAAAAGGTCTTTCTATTAGAGGGTTTTTTTTCGAAACTCTGAATCTTGGTAAATTCAATTTCCAGCATTTTTCTCTGCTATCAGGATTCCGATTCAATTTATTTTCTACTTAGATATTTCCGGGAACTTTTAGAAATTTAGAAAATTCGAAAATCCAGAAATCTTCAAATTTTCAGAATCATTTCAAAGTGCGAAATTCGAAAAACCGTATCACACAAATTTTAAGAATACAACACTCTGAAAAATGTCAAATTCTCGTATTCATGATTTTTCAAACCGTTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGAT</canonical>
            <polymorphic>ATTTTTGATATCTTTTACAGAAGCTGAAAGTAAAAGGTCTTTCTATTAGAGGGTTTTTTTTCGAAACTCTGAATCTTGGTAAATTCAATTTCCAGCATTTTTCTCTGCTATCAGGATTCCGATTCAATTTATTTTCTACTTAGATATTTCCGGGAACTTTTAGAAATTTAGAAAATTCGAAAATCCAGAAATCTTCAAATTTTCAGAATCATTTCAAAGTGCGAAATTCGAAAAACCGTATCACACAAATTTTAAGAATACAACACTCTGAAAAATGTCAAATTCTCGTATTCATGATTTTTCAAACCGTTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTARTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATCATTGTTTACACTGTTTAGC</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTCTTCCTTCTAATTTTTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAA</canonical_amplicon>
		<polymorphic_amplicon>AAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTARTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39082</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>39369</contig_pos>
        <strand>+</strand>
        <context>GTCAAAAATA[C/T]WAAAGAGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATA</left_flank>
        <right_flank>AAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCATTTTTCTCTGCTATCAGGATTCCGATTCAATTTATTTTCTACTTAGATATTTCCGGGAACTTTTAGAAATTTAGAAAATTCGAAAATCCAGAAATCTTCAAATTTTCAGAATCATTTCAAAGTGCGAAATTCGAAAAACCGTATCACACAAATTTTAAGAATACAACACTCTGAAAAATGTCAAATTCTCGTATTCATGATTTTTCAAACCGTTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATCCCCAAAAAAACCGTCATTTCACGCCCCATCTAGGTCACACAGCTGCTTCTTTTCTTTTTTTTTTCTTGAAAAAAAGATCGTC</canonical>
            <polymorphic>CAGCATTTTTCTCTGCTATCAGGATTCCGATTCAATTTATTTTCTACTTAGATATTTCCGGGAACTTTTAGAAATTTAGAAAATTCGAAAATCCAGAAATCTTCAAATTTTCAGAATCATTTCAAAGTGCGAAATTCGAAAAACCGTATCACACAAATTTTAAGAATACAACACTCTGAAAAATGTCAAATTCTCGTATTCATGATTTTTCAAACCGTTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATAYAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATCCCCAAAAAAACCGTCATTTCACGCCCCATCTAGGTCACACAGCTGCTTCTTTTCTTTTTTTTTTCTTGAAAAAAAGATCGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAATTAGAAGGAAGACAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATCTTAATTTGAGTGTTTCAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGAT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATAYAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39083</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>39370</contig_pos>
        <strand>+</strand>
        <context>TCAAAAATAY[A/T]AAAGAGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATAC</left_flank>
        <right_flank>AAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCATTTTTCTCTGCTATCAGGATTCCGATTCAATTTATTTTCTACTTAGATATTTCCGGGAACTTTTAGAAATTTAGAAAATTCGAAAATCCAGAAATCTTCAAATTTTCAGAATCATTTCAAAGTGCGAAATTCGAAAAACCGTATCACACAAATTTTAAGAATACAACACTCTGAAAAATGTCAAATTCTCGTATTCATGATTTTTCAAACCGTTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATCCCCAAAAAAACCGTCATTTCACGCCCCATCTAGGTCACACAGCTGCTTCTTTTCTTTTTTTTTTCTTGAAAAAAAGATCGTCG</canonical>
            <polymorphic>AGCATTTTTCTCTGCTATCAGGATTCCGATTCAATTTATTTTCTACTTAGATATTTCCGGGAACTTTTAGAAATTTAGAAAATTCGAAAATCCAGAAATCTTCAAATTTTCAGAATCATTTCAAAGTGCGAAATTCGAAAAACCGTATCACACAAATTTTAAGAATACAACACTCTGAAAAATGTCAAATTCTCGTATTCATGATTTTTCAAACCGTTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACWAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATCCCCAAAAAAACCGTCATTTCACGCCCCATCTAGGTCACACAGCTGCTTCTTTTCTTTTTTTTTTCTTGAAAAAAAGATCGTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAATTAGAAGGAAGACAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATCTTAATTTGAGTGTTTCAGATTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>CAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGAT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACWAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39084</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>39428</contig_pos>
        <strand>+</strand>
        <context>TTTGAAAAGA[C/T]TTTTTTTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGA</left_flank>
        <right_flank>TTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGAACTTTTAGAAATTTAGAAAATTCGAAAATCCAGAAATCTTCAAATTTTCAGAATCATTTCAAAGTGCGAAATTCGAAAAACCGTATCACACAAATTTTAAGAATACAACACTCTGAAAAATGTCAAATTCTCGTATTCATGATTTTTCAAACCGTTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATCCCCAAAAAAACCGTCATTTCACGCCCCATCTAGGTCACACAGCTGCTTCTTTTCTTTTTTTTTTCTTGAAAAAAAGATCGTCGTACCCCTGCGAACATCTGTTGGGCACAAGGAGTACACAGAGGATTCAAAAGGCCCCAT</canonical>
            <polymorphic>GGGAACTTTTAGAAATTTAGAAAATTCGAAAATCCAGAAATCTTCAAATTTTCAGAATCATTTCAAAGTGCGAAATTCGAAAAACCGTATCACACAAATTTTAAGAATACAACACTCTGAAAAATGTCAAATTCTCGTATTCATGATTTTTCAAACCGTTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGAYTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATCCCCAAAAAAACCGTCATTTCACGCCCCATCTAGGTCACACAGCTGCTTCTTTTCTTTTTTTTTTCTTGAAAAAAAGATCGTCGTACCCCTGCGAACATCTGTTGGGCACAAGGAGTACACAGAGGATTCAAAAGGCCCCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAAGGAAGACAAAATACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGTGGAAATCTTAATTTGAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACA</canonical_amplicon>
		<polymorphic_amplicon>TAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGAYTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39085</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>39455</contig_pos>
        <strand>+</strand>
        <context>ACGAAAATTA[A/T]AAAAAAAWGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTA</left_flank>
        <right_flank>AAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAATCCAGAAATCTTCAAATTTTCAGAATCATTTCAAAGTGCGAAATTCGAAAAACCGTATCACACAAATTTTAAGAATACAACACTCTGAAAAATGTCAAATTCTCGTATTCATGATTTTTCAAACCGTTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATCCCCAAAAAAACCGTCATTTCACGCCCCATCTAGGTCACACAGCTGCTTCTTTTCTTTTTTTTTTCTTGAAAAAAAGATCGTCGTACCCCTGCGAACATCTGTTGGGCACAAGGAGTACACAGAGGATTCAAAAGGCCCCATTTCTATTTTTAATTTTAATTTTCTGAT</canonical>
            <polymorphic>GAAAATCCAGAAATCTTCAAATTTTCAGAATCATTTCAAAGTGCGAAATTCGAAAAACCGTATCACACAAATTTTAAGAATACAACACTCTGAAAAATGTCAAATTCTCGTATTCATGATTTTTCAAACCGTTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAWAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATCCCCAAAAAAACCGTCATTTCACGCCCCATCTAGGTCACACAGCTGCTTCTTTTCTTTTTTTTTTCTTGAAAAAAAGATCGTCGTACCCCTGCGAACATCTGTTGGGCACAAGGAGTACACAGAGGATTCAAAAGGCCCCATTTCTATTTTTAATTTTAATTTTCTGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>374 223 169 74 45 36 31 21 12 9 6</canonical_bands>
                <polymorphic_bands>374 259 169 74 45 31 21 12 9 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGAAGGAAGACAAAATACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGTGGAAATCTTAATTTGAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACA</canonical_amplicon>
		<polymorphic_amplicon>TAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAWAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39086</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>39463</contig_pos>
        <strand></strand>
        <context>TAWAAAAAAA[A/T]GATTTTTCAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAA</left_flank>
        <right_flank>GATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAAC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAATCTTCAAATTTTCAGAATCATTTCAAAGTGCGAAATTCGAAAAACCGTATCACACAAATTTTAAGAATACAACACTCTGAAAAATGTCAAATTCTCGTATTCATGATTTTTCAAACCGTTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATCCCCAAAAAAACCGTCATTTCACGCCCCATCTAGGTCACACAGCTGCTTCTTTTCTTTTTTTTTTCTTGAAAAAAAGATCGTCGTACCCCTGCGAACATCTGTTGGGCACAAGGAGTACACAGAGGATTCAAAAGGCCCCATTTCTATTTTTAATTTTAATTTTCTGATTAATGAAA</canonical>
            <polymorphic>AGAAATCTTCAAATTTTCAGAATCATTTCAAAGTGCGAAATTCGAAAAACCGTATCACACAAATTTTAAGAATACAACACTCTGAAAAATGTCAAATTCTCGTATTCATGATTTTTCAAACCGTTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAWGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATCCCCAAAAAAACCGTCATTTCACGCCCCATCTAGGTCACACAGCTGCTTCTTTTCTTTTTTTTTTCTTGAAAAAAAGATCGTCGTACCCCTGCGAACATCTGTTGGGCACAAGGAGTACACAGAGGATTCAAAAGGCCCCATTTCTATTTTTAATTTTAATTTTCTGATTAATGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGAAGGAAGACAAAATACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGTGGAAATCTTAATTTGAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>TAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACA</canonical_amplicon>
		<polymorphic_amplicon>TAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAWGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39087</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>39586</contig_pos>
        <strand>+</strand>
        <context>AGGTTTTTTT[A/T]GAAAACTAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTT</left_flank>
        <right_flank>GAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATCCCCAAAAAAACCGTCATTTCACGCCCCATCTAGGTCACACAGCTGCTTCTTTTCTTTTTTTTTTCTTGAAAAAAAGATCGTCGTACCCCTGCGAACATCTGTTGGGCACAAGGAGTACACAGAGGATTCAAAAGGCCCCATTTCTATTTTTAATTTTAATTTTCTGATTAATGAAAATAATTAATCCATTTTGGATTCAGTTTCTCTTTTTTACTGTCGTTGTCCTACTTTACCTAGGAAAAAAATCATTAATAATAACATTCACCAAATTCTGTATGTATGTAGCGTGCCTTTTCCCT</canonical>
            <polymorphic>TTCAGAAATCATTGTTTACACTGTTTAGCGGTGAAAAATTGAAAGTGATACTCAATTTTTTTCCTTTTTTTTTCTTCATCATAAACAATTTTTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTWGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATCCCCAAAAAAACCGTCATTTCACGCCCCATCTAGGTCACACAGCTGCTTCTTTTCTTTTTTTTTTCTTGAAAAAAAGATCGTCGTACCCCTGCGAACATCTGTTGGGCACAAGGAGTACACAGAGGATTCAAAAGGCCCCATTTCTATTTTTAATTTTAATTTTCTGATTAATGAAAATAATTAATCCATTTTGGATTCAGTTTCTCTTTTTTACTGTCGTTGTCCTACTTTACCTAGGAAAAAAATCATTAATAATAACATTCACCAAATTCTGTATGTATGTAGCGTGCCTTTTCCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>499 475 26</canonical_bands>
                <polymorphic_bands>525 475</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 474 26</canonical_bands>
                <polymorphic_bands>526 474</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCTGAATGAACGAAAATTA</pcr_primer_p1>
		<pcr_primer_p2>TTGTCTCATTTAGCGGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTWGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39088</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>39677</contig_pos>
        <strand>+</strand>
        <context>GACAAGGCCA[C/T]CGTAGTCCGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCA</left_flank>
        <right_flank>CGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATCCCCAAAAAAACCGTCATTTCACGCCCCATCTAGGTCACACAGCTGCTTCTTTTCTTTTTTTTTTCTTGAAAAAAAGATCGTCGTACCCCTGCGAACATCTGTTGGGCACAAGGAGTACACAGAGGATTCAAAAGGCCCCATTTCTATTTTTAATTTTAATTTTCTGATTAATGAAAATAATTAATCCATTTTGGATTCAGTTTCTCTTTTTTACTGTCGTTGTCCTACTTTACCTAGGAAAAAAATCATTAATAATAACATTCACCAAATTCTGTATGTATGTAGCGTGCCTTTTCCCTCATTCAAGGTTAACCGATTGAGTTGAAACCTGACAGGTAGGTCAGAAGTGCGTCTTAGTTGATGCCCGAACTTTTCTTTTTTTGAAATTTT</canonical>
            <polymorphic>TTACCAAACTTTTTTCTATTTTAAAGTTCAATTTATTTCATTATTCGTCTCTTAATATTTTATTTATTTTCCATCAAAAAATAAATCTTGTTTTGACTATTATTGGCATCAAAAATACTAACACCAGTAGTAAATAGTCAAAAATTAGAAGGAAGACAAAATACAAAAAAAAATCTGAAAAGTCAAAAATACAAAAGAGAAAATATATAGTCTGAATTTTTACGATTTTTTGAAATATTTTTTGAAAAGATTTTTTTTTCTGAATGAACGAAAATTAAAAAAAAAAGATTTTTCAGCTAATAGAAAGCGCTTAAACATTTTAAAACAAATTAGAACAGTCTTAAAAACGACTGGAATTTCTGAAAAAAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCAYCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATCCCCAAAAAAACCGTCATTTCACGCCCCATCTAGGTCACACAGCTGCTTCTTTTCTTTTTTTTTTCTTGAAAAAAAGATCGTCGTACCCCTGCGAACATCTGTTGGGCACAAGGAGTACACAGAGGATTCAAAAGGCCCCATTTCTATTTTTAATTTTAATTTTCTGATTAATGAAAATAATTAATCCATTTTGGATTCAGTTTCTCTTTTTTACTGTCGTTGTCCTACTTTACCTAGGAAAAAAATCATTAATAATAACATTCACCAAATTCTGTATGTATGTAGCGTGCCTTTTCCCTCATTCAAGGTTAACCGATTGAGTTGAAACCTGACAGGTAGGTCAGAAGTGCGTCTTAGTTGATGCCCGAACTTTTCTTTTTTTGAAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATCTGAAACACTCAAATTAAGA</pcr_primer_p1>
		<pcr_primer_p2>GATGCATTCAATCAAAGAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCATCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATC</canonical_amplicon>
		<polymorphic_amplicon>AAAATCTGAAACACTCAAATTAAGATTTCCACAGGTTTTTTTCGAAAACTAAAAATTTCTTGAAGTTTCGAAAACTGAAAAATCAGAAATTCTAAATTCACGAAAACCCTTTCCGCTAAATGAGACAAGGCCAYCGTAGTCCGCCTAAATGGGCGGAGCTTGCTCATGTACTAATTCATCAAAGGGTTCATTTTTCAAAGGCTCTCCTCAGCTCTCCTCTTCATTCTCTTTGATTGAATGCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39089</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>43135</contig_pos>
        <strand></strand>
        <context>cattttgtta[A/G]tttactgctt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAGTGGTCAACTGATAATGTTTTTGATGCTATTATAAACATTTTGTTA</left_flank>
        <right_flank>TTTACTGCTTTTTGCTATCTCTTATAGGAATCGAGATAATTGAGCTCAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGATTAGCTGGAAAATCGGGTCGAAATGTCTCATCAAAAAACCACCCCGTCCGTGGATGCTTCGTTTTACAACGGTTGGTTTTGGATAATTAGGGGTATTTAGAGAGAAAGTTATAGTACTTAATTAGACAGCTTCAATATAATCATTTCATTACAGTACACCATCAATTTGATCTACTACCCACTGATCATCACATCCTTCCTGGAAATCTTCTTCCTGTTCGACGACCGTATCGATGGTCTAATGTTCCACAGTAATTATACCCAGCAAGTTTACAAGAACATTCGTCAAAACACGTGGCAAATTGTGTACAACGATTCGATGTACTTCTCCAATCCATTCAAGATTGAGTGTTAGTTAAATTGGTCAATTTTCCAAGAACTTTCCCATTTTCGCCTATATCTTGTACTTTGAGCTCGATTATCTCGGTTGCTGTAAGAGATACCCAAAAGTGGTCAACTGATAATGTTTTTGATGCTATTATAAACATTTTGTTAATTTACTGCTTTTTGCTATCTCTTATAGGAATCGAGATAATTGAGCTCAAAATTAATTGCCTTCTGTGTTCCAGTACCCTCAGGGTCTTTAACTTTAAGCCCAATTATCTCGGTTCCTGTTGAAGATAACTAAAAATAATCAACTGTCAAAATGCTTAAAATGTCATTTTGCATATTTTATCAGTTAATGATTTTTCAATACCTTTTACAGAAGCTGAGATAATTAAGATCAAAGTAAAATCAATAATTTTCTTCCCCCTCCCCCTCCCCCTGCCCCGTCTTTTTTGACCCCTCAATTACTCCAAGCCCCAAGCCCGTAAACTTTAAACTCATTTATCTCATTTTCTGTGAATGATATCAAAAAGTGGTCAACTAATAAAATATTGATGATAACGTGAAGAACATTTTATCGGTTGACAACTTTTTGATATCTCTTAAAGGGACCAAGATAAATTGGCTCAAAGGTAAAAGTTAGCTTTAAATTTCCCGAACCAATCTTCC</canonical>
            <polymorphic>GCGATTAGCTGGAAAATCGGGTCGAAATGTCTCATCAAAAAACCACCCCGTCCGTGGATGCTTCGTTTTACAACGGTTGGTTTTGGATAATTAGGGGTATTTAGAGAGAAAGTTATAGTACTTAATTAGACAGCTTCAATATAATCATTTCATTACAGTACACCATCAATTTGATCTACTACCCACTGATCATCACATCCTTCCTGGAAATCTTCTTCCTGTTCGACGACCGTATCGATGGTCTAATGTTCCACAGTAATTATACCCAGCAAGTTTACAAGAACATTCGTCAAAACACGTGGCAAATTGTGTACAACGATTCGATGTACTTCTCCAATCCATTCAAGATTGAGTGTTAGTTAAATTGGTCAATTTTCCAAGAACTTTCCCATTTTCGCCTATATCTTGTACTTTGAGCTCGATTATCTCGGTTGCTGTAAGAGATACCCAAAAGTGGTCAACTGATAATGTTTTTGATGCTATTATAAACATTTTGTTARTTTACTGCTTTTTGCTATCTCTTATAGGAATCGAGATAATTGAGCTCAAAATTAATTGCCTTCTGTGTTCCAGTACCCTCAGGGTCTTTAACTTTAAGCCCAATTATCTCGGTTCCTGTTGAAGATAACTAAAAATAATCAACTGTCAAAATGCTTAAAATGTCATTTTGCATATTTTATCAGTTAATGATTTTTCAATACCTTTTACAGAAGCTGAGATAATTAAGATCAAAGTAAAATCAATAATTTTCTTCCCCCTCCCCCTCCCCCTGCCCCGTCTTTTTTGACCCCTCAATTACTCCAAGCCCCAAGCCCGTAAACTTTAAACTCATTTATCTCATTTTCTGTGAATGATATCAAAAAGTGGTCAACTAATAAAATATTGATGATAACGTGAAGAACATTTTATCGGTTGACAACTTTTTGATATCTCTTAAAGGGACCAAGATAAATTGGCTCAAAGGTAAAAGTTAGCTTTAAATTTCCCGAACCAATCTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>238 137 122 111 100 61 55 43 39 36 29 23 6</canonical_bands>
                <polymorphic_bands>238 192 122 111 100 61 43 39 36 29 23 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>157 128 119 90 88 58 49 48 47 44 39 35 29 24 21 12 8 4</canonical_bands>
                <polymorphic_bands>167 157 119 90 88 58 49 48 47 44 35 29 24 21 12 8 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATTTTCGCCTATATCTTGT</pcr_primer_p1>
		<pcr_primer_p2>GAGTAATTGAGGGGTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>413</pcr_amplicon_size>
		<canonical_amplicon>CCATTTTCGCCTATATCTTGTACTTTGAGCTCGATTATCTCGGTTGCTGTAAGAGATACCCAAAAGTGGTCAACTGATAATGTTTTTGATGCTATTATAAACATTTTGTTAATTTACTGCTTTTTGCTATCTCTTATAGGAATCGAGATAATTGAGCTCAAAATTAATTGCCTTCTGTGTTCCAGTACCCTCAGGGTCTTTAACTTTAAGCCCAATTATCTCGGTTCCTGTTGAAGATAACTAAAAATAATCAACTGTCAAAATGCTTAAAATGTCATTTTGCATATTTTATCAGTTAATGATTTTTCAATACCTTTTACAGAAGCTGAGATAATTAAGATCAAAGTAAAATCAATAATTTTCTTCCCCCTCCCCCTCCCCCTGCCCCGTCTTTTTTGACCCCTCAATTACTC</canonical_amplicon>
		<polymorphic_amplicon>CCATTTTCGCCTATATCTTGTACTTTGAGCTCGATTATCTCGGTTGCTGTAAGAGATACCCAAAAGTGGTCAACTGATAATGTTTTTGATGCTATTATAAACATTTTGTTARTTTACTGCTTTTTGCTATCTCTTATAGGAATCGAGATAATTGAGCTCAAAATTAATTGCCTTCTGTGTTCCAGTACCCTCAGGGTCTTTAACTTTAAGCCCAATTATCTCGGTTCCTGTTGAAGATAACTAAAAATAATCAACTGTCAAAATGCTTAAAATGTCATTTTGCATATTTTATCAGTTAATGATTTTTCAATACCTTTTACAGAAGCTGAGATAATTAAGATCAAAGTAAAATCAATAATTTTCTTCCCCCTCCCCCTCCCCCTGCCCCGTCTTTTTTGACCCCTCAATTACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39090</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>43164</contig_pos>
        <strand></strand>
        <context>ctcttatagg[A/G]atcgagataa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTATTATAAACATTTTGTTAATTTACTGCTTTTTGCTATCTCTTATAGG</left_flank>
        <right_flank>ATCGAGATAATTGAGCTCAAAATTAATTGCCTTCTGTGTTCCAGTACCCT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCATCAAAAAACCACCCCGTCCGTGGATGCTTCGTTTTACAACGGTTGGTTTTGGATAATTAGGGGTATTTAGAGAGAAAGTTATAGTACTTAATTAGACAGCTTCAATATAATCATTTCATTACAGTACACCATCAATTTGATCTACTACCCACTGATCATCACATCCTTCCTGGAAATCTTCTTCCTGTTCGACGACCGTATCGATGGTCTAATGTTCCACAGTAATTATACCCAGCAAGTTTACAAGAACATTCGTCAAAACACGTGGCAAATTGTGTACAACGATTCGATGTACTTCTCCAATCCATTCAAGATTGAGTGTTAGTTAAATTGGTCAATTTTCCAAGAACTTTCCCATTTTCGCCTATATCTTGTACTTTGAGCTCGATTATCTCGGTTGCTGTAAGAGATACCCAAAAGTGGTCAACTGATAATGTTTTTGATGCTATTATAAACATTTTGTTAATTTACTGCTTTTTGCTATCTCTTATAGGAATCGAGATAATTGAGCTCAAAATTAATTGCCTTCTGTGTTCCAGTACCCTCAGGGTCTTTAACTTTAAGCCCAATTATCTCGGTTCCTGTTGAAGATAACTAAAAATAATCAACTGTCAAAATGCTTAAAATGTCATTTTGCATATTTTATCAGTTAATGATTTTTCAATACCTTTTACAGAAGCTGAGATAATTAAGATCAAAGTAAAATCAATAATTTTCTTCCCCCTCCCCCTCCCCCTGCCCCGTCTTTTTTGACCCCTCAATTACTCCAAGCCCCAAGCCCGTAAACTTTAAACTCATTTATCTCATTTTCTGTGAATGATATCAAAAAGTGGTCAACTAATAAAATATTGATGATAACGTGAAGAACATTTTATCGGTTGACAACTTTTTGATATCTCTTAAAGGGACCAAGATAAATTGGCTCAAAGGTAAAAGTTAGCTTTAAATTTCCCGAACCAATCTTCCCTTTTTCCATGATTCTTTTCCTTGAAAAT</canonical>
            <polymorphic>TCTCATCAAAAAACCACCCCGTCCGTGGATGCTTCGTTTTACAACGGTTGGTTTTGGATAATTAGGGGTATTTAGAGAGAAAGTTATAGTACTTAATTAGACAGCTTCAATATAATCATTTCATTACAGTACACCATCAATTTGATCTACTACCCACTGATCATCACATCCTTCCTGGAAATCTTCTTCCTGTTCGACGACCGTATCGATGGTCTAATGTTCCACAGTAATTATACCCAGCAAGTTTACAAGAACATTCGTCAAAACACGTGGCAAATTGTGTACAACGATTCGATGTACTTCTCCAATCCATTCAAGATTGAGTGTTAGTTAAATTGGTCAATTTTCCAAGAACTTTCCCATTTTCGCCTATATCTTGTACTTTGAGCTCGATTATCTCGGTTGCTGTAAGAGATACCCAAAAGTGGTCAACTGATAATGTTTTTGATGCTATTATAAACATTTTGTTAATTTACTGCTTTTTGCTATCTCTTATAGGRATCGAGATAATTGAGCTCAAAATTAATTGCCTTCTGTGTTCCAGTACCCTCAGGGTCTTTAACTTTAAGCCCAATTATCTCGGTTCCTGTTGAAGATAACTAAAAATAATCAACTGTCAAAATGCTTAAAATGTCATTTTGCATATTTTATCAGTTAATGATTTTTCAATACCTTTTACAGAAGCTGAGATAATTAAGATCAAAGTAAAATCAATAATTTTCTTCCCCCTCCCCCTCCCCCTGCCCCGTCTTTTTTGACCCCTCAATTACTCCAAGCCCCAAGCCCGTAAACTTTAAACTCATTTATCTCATTTTCTGTGAATGATATCAAAAAGTGGTCAACTAATAAAATATTGATGATAACGTGAAGAACATTTTATCGGTTGACAACTTTTTGATATCTCTTAAAGGGACCAAGATAAATTGGCTCAAAGGTAAAAGTTAGCTTTAAATTTCCCGAACCAATCTTCCCTTTTTCCATGATTCTTTTCCTTGAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>483 289 210 18</canonical_bands>
                <polymorphic_bands>693 289 18</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>483 289 210 18</canonical_bands>
                <polymorphic_bands>693 289 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATTTTCGCCTATATCTTGT</pcr_primer_p1>
		<pcr_primer_p2>GAGTAATTGAGGGGTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>413</pcr_amplicon_size>
		<canonical_amplicon>CCATTTTCGCCTATATCTTGTACTTTGAGCTCGATTATCTCGGTTGCTGTAAGAGATACCCAAAAGTGGTCAACTGATAATGTTTTTGATGCTATTATAAACATTTTGTTAATTTACTGCTTTTTGCTATCTCTTATAGGAATCGAGATAATTGAGCTCAAAATTAATTGCCTTCTGTGTTCCAGTACCCTCAGGGTCTTTAACTTTAAGCCCAATTATCTCGGTTCCTGTTGAAGATAACTAAAAATAATCAACTGTCAAAATGCTTAAAATGTCATTTTGCATATTTTATCAGTTAATGATTTTTCAATACCTTTTACAGAAGCTGAGATAATTAAGATCAAAGTAAAATCAATAATTTTCTTCCCCCTCCCCCTCCCCCTGCCCCGTCTTTTTTGACCCCTCAATTACTC</canonical_amplicon>
		<polymorphic_amplicon>CCATTTTCGCCTATATCTTGTACTTTGAGCTCGATTATCTCGGTTGCTGTAAGAGATACCCAAAAGTGGTCAACTGATAATGTTTTTGATGCTATTATAAACATTTTGTTAATTTACTGCTTTTTGCTATCTCTTATAGGRATCGAGATAATTGAGCTCAAAATTAATTGCCTTCTGTGTTCCAGTACCCTCAGGGTCTTTAACTTTAAGCCCAATTATCTCGGTTCCTGTTGAAGATAACTAAAAATAATCAACTGTCAAAATGCTTAAAATGTCATTTTGCATATTTTATCAGTTAATGATTTTTCAATACCTTTTACAGAAGCTGAGATAATTAAGATCAAAGTAAAATCAATAATTTTCTTCCCCCTCCCCCTCCCCCTGCCCCGTCTTTTTTGACCCCTCAATTACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39091</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>43223</contig_pos>
        <strand></strand>
        <context>ctcagggtct[T/C]taactttaag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATTGAGCTCAAAATTAATTGCCTTCTGTGTTCCAGTACCCTCAGGGTCT</left_flank>
        <right_flank>TAACTTTAAGCCCAATTATCTCGGTTCCTGTTGAAGATAACTAAAAATAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTAGGGGTATTTAGAGAGAAAGTTATAGTACTTAATTAGACAGCTTCAATATAATCATTTCATTACAGTACACCATCAATTTGATCTACTACCCACTGATCATCACATCCTTCCTGGAAATCTTCTTCCTGTTCGACGACCGTATCGATGGTCTAATGTTCCACAGTAATTATACCCAGCAAGTTTACAAGAACATTCGTCAAAACACGTGGCAAATTGTGTACAACGATTCGATGTACTTCTCCAATCCATTCAAGATTGAGTGTTAGTTAAATTGGTCAATTTTCCAAGAACTTTCCCATTTTCGCCTATATCTTGTACTTTGAGCTCGATTATCTCGGTTGCTGTAAGAGATACCCAAAAGTGGTCAACTGATAATGTTTTTGATGCTATTATAAACATTTTGTTAATTTACTGCTTTTTGCTATCTCTTATAGGAATCGAGATAATTGAGCTCAAAATTAATTGCCTTCTGTGTTCCAGTACCCTCAGGGTCTTTAACTTTAAGCCCAATTATCTCGGTTCCTGTTGAAGATAACTAAAAATAATCAACTGTCAAAATGCTTAAAATGTCATTTTGCATATTTTATCAGTTAATGATTTTTCAATACCTTTTACAGAAGCTGAGATAATTAAGATCAAAGTAAAATCAATAATTTTCTTCCCCCTCCCCCTCCCCCTGCCCCGTCTTTTTTGACCCCTCAATTACTCCAAGCCCCAAGCCCGTAAACTTTAAACTCATTTATCTCATTTTCTGTGAATGATATCAAAAAGTGGTCAACTAATAAAATATTGATGATAACGTGAAGAACATTTTATCGGTTGACAACTTTTTGATATCTCTTAAAGGGACCAAGATAAATTGGCTCAAAGGTAAAAGTTAGCTTTAAATTTCCCGAACCAATCTTCCCTTTTTCCATGATTCTTTTCCTTGAAAATTGAGCATTCTCAATTTTTAAAATTGGTGAATTTGGCTGATTTTTTAAAATCTGAATGAA</canonical>
            <polymorphic>AATTAGGGGTATTTAGAGAGAAAGTTATAGTACTTAATTAGACAGCTTCAATATAATCATTTCATTACAGTACACCATCAATTTGATCTACTACCCACTGATCATCACATCCTTCCTGGAAATCTTCTTCCTGTTCGACGACCGTATCGATGGTCTAATGTTCCACAGTAATTATACCCAGCAAGTTTACAAGAACATTCGTCAAAACACGTGGCAAATTGTGTACAACGATTCGATGTACTTCTCCAATCCATTCAAGATTGAGTGTTAGTTAAATTGGTCAATTTTCCAAGAACTTTCCCATTTTCGCCTATATCTTGTACTTTGAGCTCGATTATCTCGGTTGCTGTAAGAGATACCCAAAAGTGGTCAACTGATAATGTTTTTGATGCTATTATAAACATTTTGTTAATTTACTGCTTTTTGCTATCTCTTATAGGAATCGAGATAATTGAGCTCAAAATTAATTGCCTTCTGTGTTCCAGTACCCTCAGGGTCTYTAACTTTAAGCCCAATTATCTCGGTTCCTGTTGAAGATAACTAAAAATAATCAACTGTCAAAATGCTTAAAATGTCATTTTGCATATTTTATCAGTTAATGATTTTTCAATACCTTTTACAGAAGCTGAGATAATTAAGATCAAAGTAAAATCAATAATTTTCTTCCCCCTCCCCCTCCCCCTGCCCCGTCTTTTTTGACCCCTCAATTACTCCAAGCCCCAAGCCCGTAAACTTTAAACTCATTTATCTCATTTTCTGTGAATGATATCAAAAAGTGGTCAACTAATAAAATATTGATGATAACGTGAAGAACATTTTATCGGTTGACAACTTTTTGATATCTCTTAAAGGGACCAAGATAAATTGGCTCAAAGGTAAAAGTTAGCTTTAAATTTCCCGAACCAATCTTCCCTTTTTCCATGATTCTTTTCCTTGAAAATTGAGCATTCTCAATTTTTAAAATTGGTGAATTTGGCTGATTTTTTAAAATCTGAATGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>238 137 111 100 69 61 55 43 39 36 34 29 27 15 6</canonical_bands>
                <polymorphic_bands>238 137 111 100 69 61 55 43 42 39 34 29 27 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATTTTCGCCTATATCTTGT</pcr_primer_p1>
		<pcr_primer_p2>GAGTAATTGAGGGGTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>413</pcr_amplicon_size>
		<canonical_amplicon>CCATTTTCGCCTATATCTTGTACTTTGAGCTCGATTATCTCGGTTGCTGTAAGAGATACCCAAAAGTGGTCAACTGATAATGTTTTTGATGCTATTATAAACATTTTGTTAATTTACTGCTTTTTGCTATCTCTTATAGGAATCGAGATAATTGAGCTCAAAATTAATTGCCTTCTGTGTTCCAGTACCCTCAGGGTCTTTAACTTTAAGCCCAATTATCTCGGTTCCTGTTGAAGATAACTAAAAATAATCAACTGTCAAAATGCTTAAAATGTCATTTTGCATATTTTATCAGTTAATGATTTTTCAATACCTTTTACAGAAGCTGAGATAATTAAGATCAAAGTAAAATCAATAATTTTCTTCCCCCTCCCCCTCCCCCTGCCCCGTCTTTTTTGACCCCTCAATTACTC</canonical_amplicon>
		<polymorphic_amplicon>CCATTTTCGCCTATATCTTGTACTTTGAGCTCGATTATCTCGGTTGCTGTAAGAGATACCCAAAAGTGGTCAACTGATAATGTTTTTGATGCTATTATAAACATTTTGTTAATTTACTGCTTTTTGCTATCTCTTATAGGAATCGAGATAATTGAGCTCAAAATTAATTGCCTTCTGTGTTCCAGTACCCTCAGGGTCTYTAACTTTAAGCCCAATTATCTCGGTTCCTGTTGAAGATAACTAAAAATAATCAACTGTCAAAATGCTTAAAATGTCATTTTGCATATTTTATCAGTTAATGATTTTTCAATACCTTTTACAGAAGCTGAGATAATTAAGATCAAAGTAAAATCAATAATTTTCTTCCCCCTCCCCCTCCCCCTGCCCCGTCTTTTTTGACCCCTCAATTACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39092</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>43494</contig_pos>
        <strand></strand>
        <context>gaatgatatc[A/G]aaaagtggtc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAGCCCGTAAACTTTAAACTCATTTATCTCATTTTCTGTGAATGATATC</left_flank>
        <right_flank>AAAAGTGGTCAACTAATAAAATATTGATGATAACGTGAAGAACATTTTAT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAATTGGTCAATTTTCCAAGAACTTTCCCATTTTCGCCTATATCTTGTACTTTGAGCTCGATTATCTCGGTTGCTGTAAGAGATACCCAAAAGTGGTCAACTGATAATGTTTTTGATGCTATTATAAACATTTTGTTAATTTACTGCTTTTTGCTATCTCTTATAGGAATCGAGATAATTGAGCTCAAAATTAATTGCCTTCTGTGTTCCAGTACCCTCAGGGTCTTTAACTTTAAGCCCAATTATCTCGGTTCCTGTTGAAGATAACTAAAAATAATCAACTGTCAAAATGCTTAAAATGTCATTTTGCATATTTTATCAGTTAATGATTTTTCAATACCTTTTACAGAAGCTGAGATAATTAAGATCAAAGTAAAATCAATAATTTTCTTCCCCCTCCCCCTCCCCCTGCCCCGTCTTTTTTGACCCCTCAATTACTCCAAGCCCCAAGCCCGTAAACTTTAAACTCATTTATCTCATTTTCTGTGAATGATATCAAAAAGTGGTCAACTAATAAAATATTGATGATAACGTGAAGAACATTTTATCGGTTGACAACTTTTTGATATCTCTTAAAGGGACCAAGATAAATTGGCTCAAAGGTAAAAGTTAGCTTTAAATTTCCCGAACCAATCTTCCCTTTTTCCATGATTCTTTTCCTTGAAAATTGAGCATTCTCAATTTTTAAAATTGGTGAATTTGGCTGATTTTTTAAAATCTGAATGAAAAAAATACATTTTTTCAAATTGTTATTCAAAATTTATTAGAATCAGTACACAATTGAGCAAAAAACGGAACCCGCTGATAAGATGGATAGGCTGCAAGATAAAAAAAAAACAGTTCAAACAAAAAAAAAATCCAGAAATTTTTTTCAAAAACCCGCAACTTGAAACAAATATAGACATGATTAGAATTAAAATTTTTAAAAGAGACTTAGACACAAAAAAAAGCATGGCAACACGATAATGACATTTAAAAACTAGATAAAGGGACTACTG</canonical>
            <polymorphic>TTAAATTGGTCAATTTTCCAAGAACTTTCCCATTTTCGCCTATATCTTGTACTTTGAGCTCGATTATCTCGGTTGCTGTAAGAGATACCCAAAAGTGGTCAACTGATAATGTTTTTGATGCTATTATAAACATTTTGTTAATTTACTGCTTTTTGCTATCTCTTATAGGAATCGAGATAATTGAGCTCAAAATTAATTGCCTTCTGTGTTCCAGTACCCTCAGGGTCTTTAACTTTAAGCCCAATTATCTCGGTTCCTGTTGAAGATAACTAAAAATAATCAACTGTCAAAATGCTTAAAATGTCATTTTGCATATTTTATCAGTTAATGATTTTTCAATACCTTTTACAGAAGCTGAGATAATTAAGATCAAAGTAAAATCAATAATTTTCTTCCCCCTCCCCCTCCCCCTGCCCCGTCTTTTTTGACCCCTCAATTACTCCAAGCCCCAAGCCCGTAAACTTTAAACTCATTTATCTCATTTTCTGTGAATGATATCRAAAAGTGGTCAACTAATAAAATATTGATGATAACGTGAAGAACATTTTATCGGTTGACAACTTTTTGATATCTCTTAAAGGGACCAAGATAAATTGGCTCAAAGGTAAAAGTTAGCTTTAAATTTCCCGAACCAATCTTCCCTTTTTCCATGATTCTTTTCCTTGAAAATTGAGCATTCTCAATTTTTAAAATTGGTGAATTTGGCTGATTTTTTAAAATCTGAATGAAAAAAATACATTTTTTCAAATTGTTATTCAAAATTTATTAGAATCAGTACACAATTGAGCAAAAAACGGAACCCGCTGATAAGATGGATAGGCTGCAAGATAAAAAAAAAACAGTTCAAACAAAAAAAAAATCCAGAAATTTTTTTCAAAAACCCGCAACTTGAAACAAATATAGACATGATTAGAATTAAAATTTTTAAAAGAGACTTAGACACAAAAAAAAGCATGGCAACACGATAATGACATTTAAAAACTAGATAAAGGGACTACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGACCCCTCAATTACTC</pcr_primer_p1>
		<pcr_primer_p2>TCAATTTTCAAGGAAAAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGACCCCTCAATTACTCCAAGCCCCAAGCCCGTAAACTTTAAACTCATTTATCTCATTTTCTGTGAATGATATCAAAAAGTGGTCAACTAATAAAATATTGATGATAACGTGAAGAACATTTTATCGGTTGACAACTTTTTGATATCTCTTAAAGGGACCAAGATAAATTGGCTCAAAGGTAAAAGTTAGCTTTAAATTTCCCGAACCAATCTTCCCTTTTTCCATGATTCTTTTCCTTGAAAATTGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGACCCCTCAATTACTCCAAGCCCCAAGCCCGTAAACTTTAAACTCATTTATCTCATTTTCTGTGAATGATATCRAAAAGTGGTCAACTAATAAAATATTGATGATAACGTGAAGAACATTTTATCGGTTGACAACTTTTTGATATCTCTTAAAGGGACCAAGATAAATTGGCTCAAAGGTAAAAGTTAGCTTTAAATTTCCCGAACCAATCTTCCCTTTTTCCATGATTCTTTTCCTTGAAAATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39093</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>43534</contig_pos>
        <strand></strand>
        <context>ataacgtgaa[G/A]aacattttat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAATGATATCAAAAAGTGGTCAACTAATAAAATATTGATGATAACGTGAA</left_flank>
        <right_flank>AACATTTTATCGGTTGACAACTTTTTGATATCTCTTAAAGGGACCAAGAT</right_flank>
        <qual_score>49</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATATCTTGTACTTTGAGCTCGATTATCTCGGTTGCTGTAAGAGATACCCAAAAGTGGTCAACTGATAATGTTTTTGATGCTATTATAAACATTTTGTTAATTTACTGCTTTTTGCTATCTCTTATAGGAATCGAGATAATTGAGCTCAAAATTAATTGCCTTCTGTGTTCCAGTACCCTCAGGGTCTTTAACTTTAAGCCCAATTATCTCGGTTCCTGTTGAAGATAACTAAAAATAATCAACTGTCAAAATGCTTAAAATGTCATTTTGCATATTTTATCAGTTAATGATTTTTCAATACCTTTTACAGAAGCTGAGATAATTAAGATCAAAGTAAAATCAATAATTTTCTTCCCCCTCCCCCTCCCCCTGCCCCGTCTTTTTTGACCCCTCAATTACTCCAAGCCCCAAGCCCGTAAACTTTAAACTCATTTATCTCATTTTCTGTGAATGATATCAAAAAGTGGTCAACTAATAAAATATTGATGATAACGTGAAGAACATTTTATCGGTTGACAACTTTTTGATATCTCTTAAAGGGACCAAGATAAATTGGCTCAAAGGTAAAAGTTAGCTTTAAATTTCCCGAACCAATCTTCCCTTTTTCCATGATTCTTTTCCTTGAAAATTGAGCATTCTCAATTTTTAAAATTGGTGAATTTGGCTGATTTTTTAAAATCTGAATGAAAAAAATACATTTTTTCAAATTGTTATTCAAAATTTATTAGAATCAGTACACAATTGAGCAAAAAACGGAACCCGCTGATAAGATGGATAGGCTGCAAGATAAAAAAAAAACAGTTCAAACAAAAAAAAAATCCAGAAATTTTTTTCAAAAACCCGCAACTTGAAACAAATATAGACATGATTAGAATTAAAATTTTTAAAAGAGACTTAGACACAAAAAAAAGCATGGCAACACGATAATGACATTTAAAAACTAGATAAAGGGACTACTGTAGTCTAGAGAGGGTTACTGTAGTGTGGCAACAGTGTATA</canonical>
            <polymorphic>TATATCTTGTACTTTGAGCTCGATTATCTCGGTTGCTGTAAGAGATACCCAAAAGTGGTCAACTGATAATGTTTTTGATGCTATTATAAACATTTTGTTAATTTACTGCTTTTTGCTATCTCTTATAGGAATCGAGATAATTGAGCTCAAAATTAATTGCCTTCTGTGTTCCAGTACCCTCAGGGTCTTTAACTTTAAGCCCAATTATCTCGGTTCCTGTTGAAGATAACTAAAAATAATCAACTGTCAAAATGCTTAAAATGTCATTTTGCATATTTTATCAGTTAATGATTTTTCAATACCTTTTACAGAAGCTGAGATAATTAAGATCAAAGTAAAATCAATAATTTTCTTCCCCCTCCCCCTCCCCCTGCCCCGTCTTTTTTGACCCCTCAATTACTCCAAGCCCCAAGCCCGTAAACTTTAAACTCATTTATCTCATTTTCTGTGAATGATATCAAAAAGTGGTCAACTAATAAAATATTGATGATAACGTGAARAACATTTTATCGGTTGACAACTTTTTGATATCTCTTAAAGGGACCAAGATAAATTGGCTCAAAGGTAAAAGTTAGCTTTAAATTTCCCGAACCAATCTTCCCTTTTTCCATGATTCTTTTCCTTGAAAATTGAGCATTCTCAATTTTTAAAATTGGTGAATTTGGCTGATTTTTTAAAATCTGAATGAAAAAAATACATTTTTTCAAATTGTTATTCAAAATTTATTAGAATCAGTACACAATTGAGCAAAAAACGGAACCCGCTGATAAGATGGATAGGCTGCAAGATAAAAAAAAAACAGTTCAAACAAAAAAAAAATCCAGAAATTTTTTTCAAAAACCCGCAACTTGAAACAAATATAGACATGATTAGAATTAAAATTTTTAAAAGAGACTTAGACACAAAAAAAAGCATGGCAACACGATAATGACATTTAAAAACTAGATAAAGGGACTACTGTAGTCTAGAGAGGGTTACTGTAGTGTGGCAACAGTGTATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGACCCCTCAATTACTC</pcr_primer_p1>
		<pcr_primer_p2>TCAATTTTCAAGGAAAAGAATC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGACCCCTCAATTACTCCAAGCCCCAAGCCCGTAAACTTTAAACTCATTTATCTCATTTTCTGTGAATGATATCAAAAAGTGGTCAACTAATAAAATATTGATGATAACGTGAAGAACATTTTATCGGTTGACAACTTTTTGATATCTCTTAAAGGGACCAAGATAAATTGGCTCAAAGGTAAAAGTTAGCTTTAAATTTCCCGAACCAATCTTCCCTTTTTCCATGATTCTTTTCCTTGAAAATTGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGACCCCTCAATTACTCCAAGCCCCAAGCCCGTAAACTTTAAACTCATTTATCTCATTTTCTGTGAATGATATCAAAAAGTGGTCAACTAATAAAATATTGATGATAACGTGAARAACATTTTATCGGTTGACAACTTTTTGATATCTCTTAAAGGGACCAAGATAAATTGGCTCAAAGGTAAAAGTTAGCTTTAAATTTCCCGAACCAATCTTCCCTTTTTCCATGATTCTTTTCCTTGAAAATTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39094</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>118037</contig_pos>
        <strand>+</strand>
        <context>CAGGATTTTT[A/T]AAAACTTTAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTCATTTTCATGATTATTTTTAAGCCAGGTTTCCTAGTTCAGGATTTTT</left_flank>
        <right_flank>AAAACTTTAAAAAAATCCTTTTTCACTTATTTTGTTCTTCCCAGTTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGACTGGTTTCGAAGTGTCATGTAGTTTTGAAATGACCGGTTTCGAAGTGTCGCGGTTTCGAACTGACTGGTTTCGAAATGACTGGTTTCGAAGTGTCAAGTAGTTTCGAAATGACCGGTTTCAAAGTGTCGCGGTTTCGAAGTGGCGTGGAGCCAAAAAATGCCAAAAATCCCTAAAAATTCCGAGAAATTTTGACTTTTCAATTCCGAGAAATTTTGACTTTTCAGAAGTTGTGGAACTCACAATCAGACGACTCAGAAACTCAAAAATTCCGAGAAATTCCAAAATTCGGAAATTGAGATTTTCATGGATGAATTTTCAGCGTTTTTCAATATTTTTTTGGCTTTTAGGAATTTTTTCTCATTTTTGTACAATTTCCTACTGATTCTTTCGTTTTGATTTTCCAAAATTCATTTTGATTAGTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAGGTTTCCTAGTTCAGGATTTTTAAAAACTTTAAAAAAATCCTTTTTCACTTATTTTGTTCTTCCCAGTTTTTCTTTTTCAATTCCAAGAAATTTATTTTTTTTACTTTTTTGACTAGATCCTACAAAGAAAAAAATGTCTCCCAATTTCCAAAAAAAAAAAAATAAATTAGATCTCCAACAAAACTAATGGAAAATGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGGTGGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTTGGGGAAATTCTTTTTTTTTCAGTTCCGCTGAAACCTAAAAGGATATCCATAAATAGACATTTTTCAAGAAAACGTTTTTTTTTTTGGGAAATTAGAAAATTCAGATTTTCATTCGAATTGAACAACAGGAATAATCATGGAAAATGGTTTCAGAACTTTTCAAAGATTCGTACACAGAATTCAGTAGACGTTGGAGATTCAGAAGACGTC</canonical>
            <polymorphic>ATGACTGGTTTCGAAGTGTCATGTAGTTTTGAAATGACCGGTTTCGAAGTGTCGCGGTTTCGAACTGACTGGTTTCGAAATGACTGGTTTCGAAGTGTCAAGTAGTTTCGAAATGACCGGTTTCAAAGTGTCGCGGTTTCGAAGTGGCGTGGAGCCAAAAAATGCCAAAAATCCCTAAAAATTCCGAGAAATTTTGACTTTTCAATTCCGAGAAATTTTGACTTTTCAGAAGTTGTGGAACTCACAATCAGACGACTCAGAAACTCAAAAATTCCGAGAAATTCCAAAATTCGGAAATTGAGATTTTCATGGATGAATTTTCAGCGTTTTTCAATATTTTTTTGGCTTTTAGGAATTTTTTCTCATTTTTGTACAATTTCCTACTGATTCTTTCGTTTTGATTTTCCAAAATTCATTTTGATTAGTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAGGTTTCCTAGTTCAGGATTTTTWAAAACTTTAAAAAAATCCTTTTTCACTTATTTTGTTCTTCCCAGTTTTTCTTTTTCAATTCCAAGAAATTTATTTTTTTTACTTTTTTGACTAGATCCTACAAAGAAAAAAATGTCTCCCAATTTCCAAAAAAAAAAAAATAAATTAGATCTCCAACAAAACTAATGGAAAATGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGGTGGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTTGGGGAAATTCTTTTTTTTTCAGTTCCGCTGAAACCTAAAAGGATATCCATAAATAGACATTTTTCAAGAAAACGTTTTTTTTTTTGGGAAATTAGAAAATTCAGATTTTCATTCGAATTGAACAACAGGAATAATCATGGAAAATGGTTTCAGAACTTTTCAAAGATTCGTACACAGAATTCAGTAGACGTTGGAGATTCAGAAGACGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 492 9</canonical_bands>
                <polymorphic_bands>508 492</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>470 290 203 28 9</canonical_bands>
                <polymorphic_bands>470 290 203 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACTGATTCTTTCGTTTTGATTT</pcr_primer_p1>
		<pcr_primer_p2>GGAAATTGGGAGACATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TACTGATTCTTTCGTTTTGATTTTCCAAAATTCATTTTGATTAGTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAGGTTTCCTAGTTCAGGATTTTTAAAAACTTTAAAAAAATCCTTTTTCACTTATTTTGTTCTTCCCAGTTTTTCTTTTTCAATTCCAAGAAATTTATTTTTTTTACTTTTTTGACTAGATCCTACAAAGAAAAAAATGTCTCCCAATTTCC</canonical_amplicon>
		<polymorphic_amplicon>TACTGATTCTTTCGTTTTGATTTTCCAAAATTCATTTTGATTAGTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAGGTTTCCTAGTTCAGGATTTTTWAAAACTTTAAAAAAATCCTTTTTCACTTATTTTGTTCTTCCCAGTTTTTCTTTTTCAATTCCAAGAAATTTATTTTTTTTACTTTTTTGACTAGATCCTACAAAGAAAAAAATGTCTCCCAATTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39095</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>118125</contig_pos>
        <strand>+</strand>
        <context>TTTACTTTTT[A/C]GACTAGATCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCCCAGTTTTTCTTTTTCAATTCCAAGAAATTTATTTTTTTTACTTTTT</left_flank>
        <right_flank>GACTAGATCCTACAAAGAAAAAAATGTCTCCCAATTTCCAAAAAAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGAAGTGTCAAGTAGTTTCGAAATGACCGGTTTCAAAGTGTCGCGGTTTCGAAGTGGCGTGGAGCCAAAAAATGCCAAAAATCCCTAAAAATTCCGAGAAATTTTGACTTTTCAATTCCGAGAAATTTTGACTTTTCAGAAGTTGTGGAACTCACAATCAGACGACTCAGAAACTCAAAAATTCCGAGAAATTCCAAAATTCGGAAATTGAGATTTTCATGGATGAATTTTCAGCGTTTTTCAATATTTTTTTGGCTTTTAGGAATTTTTTCTCATTTTTGTACAATTTCCTACTGATTCTTTCGTTTTGATTTTCCAAAATTCATTTTGATTAGTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAGGTTTCCTAGTTCAGGATTTTTAAAAACTTTAAAAAAATCCTTTTTCACTTATTTTGTTCTTCCCAGTTTTTCTTTTTCAATTCCAAGAAATTTATTTTTTTTACTTTTTTGACTAGATCCTACAAAGAAAAAAATGTCTCCCAATTTCCAAAAAAAAAAAAATAAATTAGATCTCCAACAAAACTAATGGAAAATGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGGTGGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTTGGGGAAATTCTTTTTTTTTCAGTTCCGCTGAAACCTAAAAGGATATCCATAAATAGACATTTTTCAAGAAAACGTTTTTTTTTTTGGGAAATTAGAAAATTCAGATTTTCATTCGAATTGAACAACAGGAATAATCATGGAAAATGGTTTCAGAACTTTTCAAAGATTCGTACACAGAATTCAGTAGACGTTGGAGATTCAGAAGACGTCAAAACGGAGAGAAGACAAACGGATAGAACACAGCAAAAGTGTGCCCCGCGGCGGCGTCGAAACTCTCATCAAATCTCTCCATTTGCAC</canonical>
            <polymorphic>TTCGAAGTGTCAAGTAGTTTCGAAATGACCGGTTTCAAAGTGTCGCGGTTTCGAAGTGGCGTGGAGCCAAAAAATGCCAAAAATCCCTAAAAATTCCGAGAAATTTTGACTTTTCAATTCCGAGAAATTTTGACTTTTCAGAAGTTGTGGAACTCACAATCAGACGACTCAGAAACTCAAAAATTCCGAGAAATTCCAAAATTCGGAAATTGAGATTTTCATGGATGAATTTTCAGCGTTTTTCAATATTTTTTTGGCTTTTAGGAATTTTTTCTCATTTTTGTACAATTTCCTACTGATTCTTTCGTTTTGATTTTCCAAAATTCATTTTGATTAGTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAGGTTTCCTAGTTCAGGATTTTTAAAAACTTTAAAAAAATCCTTTTTCACTTATTTTGTTCTTCCCAGTTTTTCTTTTTCAATTCCAAGAAATTTATTTTTTTTACTTTTTMGACTAGATCCTACAAAGAAAAAAATGTCTCCCAATTTCCAAAAAAAAAAAAATAAATTAGATCTCCAACAAAACTAATGGAAAATGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGGTGGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTTGGGGAAATTCTTTTTTTTTCAGTTCCGCTGAAACCTAAAAGGATATCCATAAATAGACATTTTTCAAGAAAACGTTTTTTTTTTTGGGAAATTAGAAAATTCAGATTTTCATTCGAATTGAACAACAGGAATAATCATGGAAAATGGTTTCAGAACTTTTCAAAGATTCGTACACAGAATTCAGTAGACGTTGGAGATTCAGAAGACGTCAAAACGGAGAGAAGACAAACGGATAGAACACAGCAAAAGTGTGCCCCGCGGCGGCGTCGAAACTCTCATCAAATCTCTCCATTTGCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTTTTCACTTATTTTGTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>TTTATTCGTTTTCCCCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTTTTTCACTTATTTTGTTCTTCCCAGTTTTTCTTTTTCAATTCCAAGAAATTTATTTTTTTTACTTTTTTGACTAGATCCTACAAAGAAAAAAATGTCTCCCAATTTCCAAAAAAAAAAAAATAAATTAGATCTCCAACAAAACTAATGGAAAATGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGGTGGGGAAAAAGGGGAAAACGAATAAA</canonical_amplicon>
		<polymorphic_amplicon>CCTTTTTCACTTATTTTGTTCTTCCCAGTTTTTCTTTTTCAATTCCAAGAAATTTATTTTTTTTACTTTTTMGACTAGATCCTACAAAGAAAAAAATGTCTCCCAATTTCCAAAAAAAAAAAAATAAATTAGATCTCCAACAAAACTAATGGAAAATGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGGTGGGGAAAAAGGGGAAAACGAATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39096</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>118338</contig_pos>
        <strand>+</strand>
        <context>GGGGAAATTC[A/C]TTTTTTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTTGGGGAAATTC</left_flank>
        <right_flank>TTTTTTTTCAGTTCCGCTGAAACCTAAAAGGATATCCATAAATAGACATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTTTCATGGATGAATTTTCAGCGTTTTTCAATATTTTTTTGGCTTTTAGGAATTTTTTCTCATTTTTGTACAATTTCCTACTGATTCTTTCGTTTTGATTTTCCAAAATTCATTTTGATTAGTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAGGTTTCCTAGTTCAGGATTTTTAAAAACTTTAAAAAAATCCTTTTTCACTTATTTTGTTCTTCCCAGTTTTTCTTTTTCAATTCCAAGAAATTTATTTTTTTTACTTTTTTGACTAGATCCTACAAAGAAAAAAATGTCTCCCAATTTCCAAAAAAAAAAAAATAAATTAGATCTCCAACAAAACTAATGGAAAATGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGGTGGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTTGGGGAAATTCTTTTTTTTTCAGTTCCGCTGAAACCTAAAAGGATATCCATAAATAGACATTTTTCAAGAAAACGTTTTTTTTTTTGGGAAATTAGAAAATTCAGATTTTCATTCGAATTGAACAACAGGAATAATCATGGAAAATGGTTTCAGAACTTTTCAAAGATTCGTACACAGAATTCAGTAGACGTTGGAGATTCAGAAGACGTCAAAACGGAGAGAAGACAAACGGATAGAACACAGCAAAAGTGTGCCCCGCGGCGGCGTCGAAACTCTCATCAAATCTCTCCATTTGCACTAAAGGGAAAATGAGAAAAATAGGAGAAGAAGAAGAGAAAAGGACAAATTCATGGGAACAAAAACTCTCAGATTTAATGGGGCCGAACCGAGAAATGAGCAGCCGAAAATGAGCTAAGGAGGCGGGCATTCTTTTGAAGACGTCATTATTTTTTTTGGGAAAGGGATTCTGGGAAATTTGGCTCTTATCTGGAATCTGAGGTTCCAAGACGCT</canonical>
            <polymorphic>GATTTTCATGGATGAATTTTCAGCGTTTTTCAATATTTTTTTGGCTTTTAGGAATTTTTTCTCATTTTTGTACAATTTCCTACTGATTCTTTCGTTTTGATTTTCCAAAATTCATTTTGATTAGTTGGAATTTTCAAAATAGTTTACTATTCATTTTCATGATTATTTTTAAGCCAGGTTTCCTAGTTCAGGATTTTTAAAAACTTTAAAAAAATCCTTTTTCACTTATTTTGTTCTTCCCAGTTTTTCTTTTTCAATTCCAAGAAATTTATTTTTTTTACTTTTTTGACTAGATCCTACAAAGAAAAAAATGTCTCCCAATTTCCAAAAAAAAAAAAATAAATTAGATCTCCAACAAAACTAATGGAAAATGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGGTGGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTTGGGGAAATTCMTTTTTTTTCAGTTCCGCTGAAACCTAAAAGGATATCCATAAATAGACATTTTTCAAGAAAACGTTTTTTTTTTTGGGAAATTAGAAAATTCAGATTTTCATTCGAATTGAACAACAGGAATAATCATGGAAAATGGTTTCAGAACTTTTCAAAGATTCGTACACAGAATTCAGTAGACGTTGGAGATTCAGAAGACGTCAAAACGGAGAGAAGACAAACGGATAGAACACAGCAAAAGTGTGCCCCGCGGCGGCGTCGAAACTCTCATCAAATCTCTCCATTTGCACTAAAGGGAAAATGAGAAAAATAGGAGAAGAAGAAGAGAAAAGGACAAATTCATGGGAACAAAAACTCTCAGATTTAATGGGGCCGAACCGAGAAATGAGCAGCCGAAAATGAGCTAAGGAGGCGGGCATTCTTTTGAAGACGTCATTATTTTTTTTGGGAAAGGGATTCTGGGAAATTTGGCTCTTATCTGGAATCTGAGGTTCCAAGACGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTAGATCTCCAACAAAACTAATG</pcr_primer_p1>
		<pcr_primer_p2>GAATTTTCTAATTTCCCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTAGATCTCCAACAAAACTAATGGAAAATGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGGTGGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTTGGGGAAATTCTTTTTTTTTCAGTTCCGCTGAAACCTAAAAGGATATCCATAAATAGACATTTTTCAAGAAAACGTTTTTTTTTTTGGGAAATTAGAAAATTC</canonical_amplicon>
		<polymorphic_amplicon>AATTAGATCTCCAACAAAACTAATGGAAAATGGAACATTTCTTCAAAAAAAAACTAATTTTATTTTCTTAATCCTAAAAAAGCCCTTTTGGAGAAGGGTGGGGAAAAAGGGGAAAACGAATAAAAAAGAAACAAAAAAAAGTATTTTTGGGGAAATTCMTTTTTTTTCAGTTCCGCTGAAACCTAAAAGGATATCCATAAATAGACATTTTTCAAGAAAACGTTTTTTTTTTTGGGAAATTAGAAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39097</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>145867</contig_pos>
        <strand>+</strand>
        <context>GGAACCTGCA[C/T]ATTTYGATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCTCATCGAGCGAGTCGTTCAGTGGATTGGAAAATGATTGGAACCTGCA</left_flank>
        <right_flank>ATTTCGATTTTTTGGAAATTTTTTTTCACATTTTCTGATTAGAGATTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATGGCCTAGGTTCTGCAAAATTTGGGTTTCTAGGCCACCAACTTCAAGCAGCAATCACTCGCTTCAAAATCATTATTTCGACAATCTGAAAATTGGTTCATATATGTCACAATTCGTGATTTCCAACCATCAAATAAACACTTTATATTTCAATTTGAAAATTTCAAAAATCACATAGAGAAAACATAATATCACAAGAAAAAGTACATAGCACCATACATGACAACATAAATAAGTAGAAATTGAAAATATGTAAAGTAGGAAAGAGGAATTTGAGAAGAAACGAATCTTTGGTTTTTCAGGAAAATGTTCAAAATACAGACAAAAAAGATTTTTGCAGGAAAAAAAGAGAAATTTTGGTAAAAATTGATAAAAAAATCTAAAAATCAAGAATTTCTACTACTATACATTTGATGGTTGCGTTGTTTCATTGTTTTGAGATGATGGGAGCTCATCGAGCGAGTCGTTCAGTGGATTGGAAAATGATTGGAACCTGCAAATTTCGATTTTTTGGAAATTTTTTTTCACATTTTCTGATTAGAGATTGAAATTGATTAGAATTCGGCCATTTTTTCGGTTACAATCAAAATTTTTTAAAAAAAATTCTTGAAAAGATCTAATTTTTAATTTTCGAAAAACAGTGATGGCCTAGAAACCCGAATTTTGTAAAAACTAGATCATGTTGCATGTGGTTGGAAAGCACAGGTTGTGGCGAATCTAACCCAGCTGTCAAATTTCAAATATAATGATTCTGAAGCGAGTTATACCCAATTTGATGTTGGTGGCCTAGAAAACCAAAACTAGGCCGCATTCATAAATCGCTTCAAAATCAAGATTTTTGAAATCTGAAAACTAATTTGGAACCGTCAAATCCTGCTCTTCAAAACCATCCACGTCATGGCCTAATTTTTTCTGATTTTGGATTTCTAGGCCATCATTTTAAAATGGCCATGAAAAATTTTCGTTCAGTGGATTGGAAAATGATTAGAACCTGCAAAA</canonical>
            <polymorphic>CATGGCCTAGGTTCTGCAAAATTTGGGTTTCTAGGCCACCAACTTCAAGCAGCAATCACTCGCTTCAAAATCATTATTTCGACAATCTGAAAATTGGTTCATATATGTCACAATTCGTGATTTCCAACCATCAAATAAACACTTTATATTTCAATTTGAAAATTTCAAAAATCACATAGAGAAAACATAATATCACAAGAAAAAGTACATAGCACCATACATGACAACATAAATAAGTAGAAATTGAAAATATGTAAAGTAGGAAAGAGGAATTTGAGAAGAAACGAATCTTTGGTTTTTCAGGAAAATGTTCAAAATACAGACAAAAAAGATTTTTGCAGGAAAAAAAGAGAAATTTTGGTAAAAATTGATAAAAAAATCTAAAAATCAAGAATTTCTACTACTATACATTTGATGGTTGCGTTGTTTCATTGTTTTGAGATGATGGGAGCTCATCGAGCGAGTCGTTCAGTGGATTGGAAAATGATTGGAACCTGCAYATTTCGATTTTTTGGAAATTTTTTTTCACATTTTCTGATTAGAGATTGAAATTGATTAGAATTCGGCCATTTTTTCGGTTACAATCAAAATTTTTTAAAAAAAATTCTTGAAAAGATCTAATTTTTAATTTTCGAAAAACAGTGATGGCCTAGAAACCCGAATTTTGTAAAAACTAGATCATGTTGCATGTGGTTGGAAAGCACAGGTTGTGGCGAATCTAACCCAGCTGTCAAATTTCAAATATAATGATTCTGAAGCGAGTTATACCCAATTTGATGTTGGTGGCCTAGAAAACCAAAACTAGGCCGCATTCATAAATCGCTTCAAAATCAAGATTTTTGAAATCTGAAAACTAATTTGGAACCGTCAAATCCTGCTCTTCAAAACCATCCACGTCATGGCCTAATTTTTTCTGATTTTGGATTTCTAGGCCATCATTTTAAAATGGCCATGAAAAATTTTCGTTCAGTGGATTGGAAAATGATTAGAACCTGCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>224 141 110 107 83 73 58 43 43 39 29 19 17 14</canonical_bands>
                <polymorphic_bands>224 141 124 110 83 73 58 43 43 39 29 19 14</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>107 85 83 81 73 72 52 50 43 41 37 34 33 29 29 27 20 19 17 17 14 12 10 8 7</canonical_bands>
                <polymorphic_bands>124 85 83 81 73 72 52 50 43 41 37 34 33 29 29 27 20 19 17 14 12 10 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGAAATTTTGGTAAAAATTGATAA</pcr_primer_p1>
		<pcr_primer_p2>AAAATGGCCGAATTCTAATC</pcr_primer_p2>
		<pcr_amplicon_size>224</pcr_amplicon_size>
		<canonical_amplicon>GAGAAATTTTGGTAAAAATTGATAAAAAAATCTAAAAATCAAGAATTTCTACTACTATACATTTGATGGTTGCGTTGTTTCATTGTTTTGAGATGATGGGAGCTCATCGAGCGAGTCGTTCAGTGGATTGGAAAATGATTGGAACCTGCAAATTTCGATTTTTTGGAAATTTTTTTTCACATTTTCTGATTAGAGATTGAAATTGATTAGAATTCGGCCATTTT</canonical_amplicon>
		<polymorphic_amplicon>GAGAAATTTTGGTAAAAATTGATAAAAAAATCTAAAAATCAAGAATTTCTACTACTATACATTTGATGGTTGCGTTGTTTCATTGTTTTGAGATGATGGGAGCTCATCGAGCGAGTCGTTCAGTGGATTGGAAAATGATTGGAACCTGCAYATTTCGATTTTTTGGAAATTTTTTTTCACATTTTCTGATTAGAGATTGAAATTGATTAGAATTCGGCCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39098</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>145912</contig_pos>
        <strand>+</strand>
        <context>CTGATTAGAG[A/T/G]TTGAAATTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T/G</alleles>
        <left_flank>CTGCAAATTTCGATTTTTTGGAAATTTTTTTTCACATTTTCTGATTAGAG</left_flank>
        <right_flank>TTGAAATTGATTAGAATTCGGCCATTTTTTCGGTTACAATCAAAATTTTT</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAGCAGCAATCACTCGCTTCAAAATCATTATTTCGACAATCTGAAAATTGGTTCATATATGTCACAATTCGTGATTTCCAACCATCAAATAAACACTTTATATTTCAATTTGAAAATTTCAAAAATCACATAGAGAAAACATAATATCACAAGAAAAAGTACATAGCACCATACATGACAACATAAATAAGTAGAAATTGAAAATATGTAAAGTAGGAAAGAGGAATTTGAGAAGAAACGAATCTTTGGTTTTTCAGGAAAATGTTCAAAATACAGACAAAAAAGATTTTTGCAGGAAAAAAAGAGAAATTTTGGTAAAAATTGATAAAAAAATCTAAAAATCAAGAATTTCTACTACTATACATTTGATGGTTGCGTTGTTTCATTGTTTTGAGATGATGGGAGCTCATCGAGCGAGTCGTTCAGTGGATTGGAAAATGATTGGAACCTGCAAATTTCGATTTTTTGGAAATTTTTTTTCACATTTTCTGATTAGAGATTGAAATTGATTAGAATTCGGCCATTTTTTCGGTTACAATCAAAATTTTTTAAAAAAAATTCTTGAAAAGATCTAATTTTTAATTTTCGAAAAACAGTGATGGCCTAGAAACCCGAATTTTGTAAAAACTAGATCATGTTGCATGTGGTTGGAAAGCACAGGTTGTGGCGAATCTAACCCAGCTGTCAAATTTCAAATATAATGATTCTGAAGCGAGTTATACCCAATTTGATGTTGGTGGCCTAGAAAACCAAAACTAGGCCGCATTCATAAATCGCTTCAAAATCAAGATTTTTGAAATCTGAAAACTAATTTGGAACCGTCAAATCCTGCTCTTCAAAACCATCCACGTCATGGCCTAATTTTTTCTGATTTTGGATTTCTAGGCCATCATTTTAAAATGGCCATGAAAAATTTTCGTTCAGTGGATTGGAAAATGATTAGAACCTGCAAAAATCGATTTTTGGAAAATTTTTTTCACGATTTCTGATTAGAGGTTA</canonical>
            <polymorphic>CAAGCAGCAATCACTCGCTTCAAAATCATTATTTCGACAATCTGAAAATTGGTTCATATATGTCACAATTCGTGATTTCCAACCATCAAATAAACACTTTATATTTCAATTTGAAAATTTCAAAAATCACATAGAGAAAACATAATATCACAAGAAAAAGTACATAGCACCATACATGACAACATAAATAAGTAGAAATTGAAAATATGTAAAGTAGGAAAGAGGAATTTGAGAAGAAACGAATCTTTGGTTTTTCAGGAAAATGTTCAAAATACAGACAAAAAAGATTTTTGCAGGAAAAAAAGAGAAATTTTGGTAAAAATTGATAAAAAAATCTAAAAATCAAGAATTTCTACTACTATACATTTGATGGTTGCGTTGTTTCATTGTTTTGAGATGATGGGAGCTCATCGAGCGAGTCGTTCAGTGGATTGGAAAATGATTGGAACCTGCAAATTTCGATTTTTTGGAAATTTTTTTTCACATTTTCTGATTAGAGWTTGAAATTGATTAGAATTCGGCCATTTTTTCGGTTACAATCAAAATTTTTTAAAAAAAATTCTTGAAAAGATCTAATTTTTAATTTTCGAAAAACAGTGATGGCCTAGAAACCCGAATTTTGTAAAAACTAGATCATGTTGCATGTGGTTGGAAAGCACAGGTTGTGGCGAATCTAACCCAGCTGTCAAATTTCAAATATAATGATTCTGAAGCGAGTTATACCCAATTTGATGTTGGTGGCCTAGAAAACCAAAACTAGGCCGCATTCATAAATCGCTTCAAAATCAAGATTTTTGAAATCTGAAAACTAATTTGGAACCGTCAAATCCTGCTCTTCAAAACCATCCACGTCATGGCCTAATTTTTTCTGATTTTGGATTTCTAGGCCATCATTTTAAAATGGCCATGAAAAATTTTCGTTCAGTGGATTGGAAAATGATTAGAACCTGCAAAAATCGATTTTTGGAAAATTTTTTTCACGATTTCTGATTAGAGGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTGGATTGGAAAATGATTG</pcr_primer_p1>
		<pcr_primer_p2>CGATTTTTGCAGGTTCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>534</pcr_amplicon_size>
		<canonical_amplicon>AGTGGATTGGAAAATGATTGGAACCTGCAAATTTCGATTTTTTGGAAATTTTTTTTCACATTTTCTGATTAGAGATTGAAATTGATTAGAATTCGGCCATTTTTTCGGTTACAATCAAAATTTTTTAAAAAAAATTCTTGAAAAGATCTAATTTTTAATTTTCGAAAAACAGTGATGGCCTAGAAACCCGAATTTTGTAAAAACTAGATCATGTTGCATGTGGTTGGAAAGCACAGGTTGTGGCGAATCTAACCCAGCTGTCAAATTTCAAATATAATGATTCTGAAGCGAGTTATACCCAATTTGATGTTGGTGGCCTAGAAAACCAAAACTAGGCCGCATTCATAAATCGCTTCAAAATCAAGATTTTTGAAATCTGAAAACTAATTTGGAACCGTCAAATCCTGCTCTTCAAAACCATCCACGTCATGGCCTAATTTTTTCTGATTTTGGATTTCTAGGCCATCATTTTAAAATGGCCATGAAAAATTTTCGTTCAGTGGATTGGAAAATGATTAGAACCTGCAAAAATCG</canonical_amplicon>
		<polymorphic_amplicon>AGTGGATTGGAAAATGATTGGAACCTGCAAATTTCGATTTTTTGGAAATTTTTTTTCACATTTTCTGATTAGAGWTTGAAATTGATTAGAATTCGGCCATTTTTTCGGTTACAATCAAAATTTTTTAAAAAAAATTCTTGAAAAGATCTAATTTTTAATTTTCGAAAAACAGTGATGGCCTAGAAACCCGAATTTTGTAAAAACTAGATCATGTTGCATGTGGTTGGAAAGCACAGGTTGTGGCGAATCTAACCCAGCTGTCAAATTTCAAATATAATGATTCTGAAGCGAGTTATACCCAATTTGATGTTGGTGGCCTAGAAAACCAAAACTAGGCCGCATTCATAAATCGCTTCAAAATCAAGATTTTTGAAATCTGAAAACTAATTTGGAACCGTCAAATCCTGCTCTTCAAAACCATCCACGTCATGGCCTAATTTTTTCTGATTTTGGATTTCTAGGCCATCATTTTAAAATGGCCATGAAAAATTTTCGTTCAGTGGATTGGAAAATGATTAGAACCTGCAAAAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39099</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>147486</contig_pos>
        <strand>+</strand>
        <context>GAAAATGGGA[C/T]TTTTTTTTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGA</left_flank>
        <right_flank>TTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGAAAAAAGACAATTAAAAAGAAGCTAAAAAAGAGCAATTTCGTGACAATGCAACAGGCACGCACCGACCCAGATTCAGCAGATTCGACGGTGCGTAGGTGGATCGAGTGGTCGGGGAGCCGAGTTCCGACGGCGGTGGAATCATTTCGAGGAAATCGTGAAGACAGCCACGCTTCTCCATTGAACGCAAGCCGTCTGAGTAGCGGTCCTGGAAGAATTGGGATTTTTAAGATTTTGAGATTTCGAGATTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTTTTTTTTTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAAAATTGGAAATTTCGATTTTTCGCATTTTTTCAAAAATCGAATAAT</canonical>
            <polymorphic>AGAGAAAAAAGACAATTAAAAAGAAGCTAAAAAAGAGCAATTTCGTGACAATGCAACAGGCACGCACCGACCCAGATTCAGCAGATTCGACGGTGCGTAGGTGGATCGAGTGGTCGGGGAGCCGAGTTCCGACGGCGGTGGAATCATTTCGAGGAAATCGTGAAGACAGCCACGCTTCTCCATTGAACGCAAGCCGTCTGAGTAGCGGTCCTGGAAGAATTGGGATTTTTAAGATTTTGAGATTTCGAGATTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTTTTTTTTTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGAYTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAAAATTGGAAATTTCGATTTTTCGCATTTTTTCAAAAATCGAATAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTAAATATCCAGAAAATCACAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAATCTGAAATTTAACAAAACAAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGAYTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39100</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>147672</contig_pos>
        <strand>+</strand>
        <context>CCAAAGTCTK[C/T]AATTTTYAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTT</left_flank>
        <right_flank>AATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGCAAGCCGTCTGAGTAGCGGTCCTGGAAGAATTGGGATTTTTAAGATTTTGAGATTTCGAGATTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTTTTTTTTTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAAAATTGGAAATTTCGATTTTTCGCATTTTTTCAAAAATCGAATAATTCAAAAATAATTTTCCGATTTCTCAGAATTTTCCGGGAAAAAAAATCGAAAATTTAAAAATCAAAAATTCGGAGAAATTTTGAATTTTCCGGAAAATTCGAAAAAAAAATTAAATTTTTTGATATTTTAGAGCAAATTTTTTTCTTCAAAAATCTGAAATTTTGAAAAACCAAACTATAATTTTTT</canonical>
            <polymorphic>ACGCAAGCCGTCTGAGTAGCGGTCCTGGAAGAATTGGGATTTTTAAGATTTTGAGATTTCGAGATTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTTTTTTTTTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTYAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAAAATTGGAAATTTCGATTTTTCGCATTTTTTCAAAAATCGAATAATTCAAAAATAATTTTCCGATTTCTCAGAATTTTCCGGGAAAAAAAATCGAAAATTTAAAAATCAAAAATTCGGAGAAATTTTGAATTTTCCGGAAAATTCGAAAAAAAAATTAAATTTTTTGATATTTTAGAGCAAATTTTTTTCTTCAAAAATCTGAAATTTTGAAAAACCAAACTATAATTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>389 64 57 54 43 33 29 29 29 29 27 25 24 23 22 21 18 16 15 12 10 9 8 7 7</canonical_bands>
                <polymorphic_bands>389 64 57 54 43 42 29 29 29 29 27 25 24 23 22 21 18 16 15 12 10 8 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>270 216 190 167 97 60</canonical_bands>
                <polymorphic_bands>486 190 167 97 60</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAGCATTCCGAGTCTAATA</pcr_primer_p1>
		<pcr_primer_p2>TGGATTTTTGAATTATTTCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCA</canonical_amplicon>
		<polymorphic_amplicon>TTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTYAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39101</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>147791</contig_pos>
        <strand>+</strand>
        <context>TCAAAAAAAA[A/T]CCGAAATTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAA</left_flank>
        <right_flank>CCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTTTTTTTTTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAAAATTGGAAATTTCGATTTTTCGCATTTTTTCAAAAATCGAATAATTCAAAAATAATTTTCCGATTTCTCAGAATTTTCCGGGAAAAAAAATCGAAAATTTAAAAATCAAAAATTCGGAGAAATTTTGAATTTTCCGGAAAATTCGAAAAAAAAATTAAATTTTTTGATATTTTAGAGCAAATTTTTTTCTTCAAAAATCTGAAATTTTGAAAAACCAAACTATAATTTTTTATTTCAAAAATTCACAAAAACAAAAAAACCTAATATCACGAGGAGAACCTGATTAGATAGCTAATCATGAGGAGGCTCATTAGTGTCAAAATCCAAAAAATAATAATATTTTCATTTTT</canonical>
            <polymorphic>ATTCTTAGCTTCTTAGATTCTTAGATTCTTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTTTTTTTTTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAWCCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAAAATTGGAAATTTCGATTTTTCGCATTTTTTCAAAAATCGAATAATTCAAAAATAATTTTCCGATTTCTCAGAATTTTCCGGGAAAAAAAATCGAAAATTTAAAAATCAAAAATTCGGAGAAATTTTGAATTTTCCGGAAAATTCGAAAAAAAAATTAAATTTTTTGATATTTTAGAGCAAATTTTTTTCTTCAAAAATCTGAAATTTTGAAAAACCAAACTATAATTTTTTATTTCAAAAATTCACAAAAACAAAAAAACCTAATATCACGAGGAGAACCTGATTAGATAGCTAATCATGAGGAGGCTCATTAGTGTCAAAATCCAAAAAATAATAATATTTTCATTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATGCACTGAAAAACTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTCGATAATTGGAAACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>AATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAA</canonical_amplicon>
		<polymorphic_amplicon>AATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAWCCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39102</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>147819</contig_pos>
        <strand>+</strand>
        <context>CAGATTTTTT[A/T]GAACAAATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTT</left_flank>
        <right_flank>GAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTTTTTTTTTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAAAATTGGAAATTTCGATTTTTCGCATTTTTTCAAAAATCGAATAATTCAAAAATAATTTTCCGATTTCTCAGAATTTTCCGGGAAAAAAAATCGAAAATTTAAAAATCAAAAATTCGGAGAAATTTTGAATTTTCCGGAAAATTCGAAAAAAAAATTAAATTTTTTGATATTTTAGAGCAAATTTTTTTCTTCAAAAATCTGAAATTTTGAAAAACCAAACTATAATTTTTTATTTCAAAAATTCACAAAAACAAAAAAACCTAATATCACGAGGAGAACCTGATTAGATAGCTAATCATGAGGAGGCTCATTAGTGTCAAAATCCAAAAAATAATAATATTTTCATTTTTCGAAATTTCCTCATTTTTGGCTAGCTAA</canonical>
            <polymorphic>TTAGATTCTTAGCTTCTTAGATTCTTAGATTCTTATATTCTTAGCTTCTTAGATTCTTAGATTTTTTTTTTCTAAATATCCAGAAAATCACAATTTTCAATTACTTTACCAAAAAAGCAGTACACTCACTATCAGGCTCCGACCAGAAAAAAAAAGGAAAATGGGATTTTTTTTTGGATTTTCAGCATTCCGAGTCTAATATTCCTGGATTCTTAGATTTTCGATTTGAAAAACAATATTAAAATTTGCTTTAAAAATTGAAAAATTGTTGAATTTTCAAATTTAAGAAAAAGTTGTTTTGTTAAATTTCAGATTTTTTGAATTTCATTATTCACCAAAACCCCAAAGTCTTGAATTTTCAAAATTTTGAATTTTTCAATTTTTTCACAATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTWGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAAAATTGGAAATTTCGATTTTTCGCATTTTTTCAAAAATCGAATAATTCAAAAATAATTTTCCGATTTCTCAGAATTTTCCGGGAAAAAAAATCGAAAATTTAAAAATCAAAAATTCGGAGAAATTTTGAATTTTCCGGAAAATTCGAAAAAAAAATTAAATTTTTTGATATTTTAGAGCAAATTTTTTTCTTCAAAAATCTGAAATTTTGAAAAACCAAACTATAATTTTTTATTTCAAAAATTCACAAAAACAAAAAAACCTAATATCACGAGGAGAACCTGATTAGATAGCTAATCATGAGGAGGCTCATTAGTGTCAAAATCCAAAAAATAATAATATTTTCATTTTTCGAAATTTCCTCATTTTTGGCTAGCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATGCACTGAAAAACTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTCGATAATTGGAAACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>234</pcr_amplicon_size>
		<canonical_amplicon>AATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTAGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAA</canonical_amplicon>
		<polymorphic_amplicon>AATATGCACTGAAAAACTGAAATAATTCAAAAATCCAAAATTTCAGTTTTTTCCGAAAATCGAAAAAAATTTTTCAAAAAAAAACCGAAATTTGAGATTTTCAGATTTTTTWGAACAAATTCGCAATTTTCAAAAATCAATTTTTTTTAATGCACTGGAAAATTTTTTTTCGGATTTCAAGATTTCAAATTTTAAGGTTTTTTTTTTGAACAAAAAAGTTTCCAATTATCGAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39113</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>168124</contig_pos>
        <strand>+</strand>
        <context>GCGGTGGCGC[C/T]GGCCTCGTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGCACATCCTTCTCTTCTTCATCTCGGTCGTCGTGATGGGCGGTGGCGC</left_flank>
        <right_flank>GGCCTCGTCTTCAGCTTCCTCTATTGGCATCTCCAAGACATCGGAGGCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGGTCAACTACAGATATAAGAAGGAGCGATTTTCAAAATTTTCAATTTTCATCCCAAATCACTTCGATTTCCAAAATTTCTGGGAATTTGGAAATTTTACGTGATTCACAGAAATTGAATGTTGCAATTTCTGGGATTTTTCACAGAACTCGACGGTTCGAGTTCTGGGATTTTGGAAATTCACGTGATTTTACTGAAACTTCACAGAAATTTTGGAAATCGAAGTGATTTGGGATGAAAATTGAAAATTTTAAAAATCGCTCCTTCTTATATGTCTAACATTTTTAGCTCTAATTTTTTGTAGTTGGCGATTTTTTCGTATCTTATTTAGTTTTTGAGATACAACGGTAATCCGATCTCTACACATCTAAACCAGTCAAATTTTCAGTCCGAAGGTGGCTCTGGCTCCGAGAACAGTCTCCTGCTCGCCATGAAGGCCCTCGCCAGCATGCACATCCTTCTCTTCTTCATCTCGGTCGTCGTGATGGGCGGTGGCGCTGGCCTCGTCTTCAGCTTCCTCTATTGGCATCTCCAAGACATCGGAGGCTCTCCAGTCCTGTTTGGAATCCTCTCCGTCGTCAATCATGCATCAGAGATTATCACCTACTTCTATGTCTTCAAACTCATCAATAAGGTAGGTATCGAGGGCAAAAATATCGAAAATGGAAATGCAGCGAGAAGGAATTGAACTCGTGAGCTCTCGATCCAAAACCAGGCGCTCTATCCACTGCGCCGTGTGCTGTGGCGCAGTGGATAGAGCTTTTCGCTTTGAAGCAAGAGCCCGCGAGCTCAATTCCTTCCAGCGTCAGTTAGGTTGTTTTTTAATCGTTTTCCATCCCCTTTTATCACTATTTTCCAGTACGGCCATGTGCGCGTTATGTATCTCTGCCTCGCTGTCAACTTCTTCCGTTTCATGGCCCTCTCGATCCTGGACAACCCGTGGATGGTCCTCCCGCTTCAGGTTTTGCAAGGTAAATTTCACTTTAAAAATGAATTCAA</canonical>
            <polymorphic>ATGGTCAACTACAGATATAAGAAGGAGCGATTTTCAAAATTTTCAATTTTCATCCCAAATCACTTCGATTTCCAAAATTTCTGGGAATTTGGAAATTTTACGTGATTCACAGAAATTGAATGTTGCAATTTCTGGGATTTTTCACAGAACTCGACGGTTCGAGTTCTGGGATTTTGGAAATTCACGTGATTTTACTGAAACTTCACAGAAATTTTGGAAATCGAAGTGATTTGGGATGAAAATTGAAAATTTTAAAAATCGCTCCTTCTTATATGTCTAACATTTTTAGCTCTAATTTTTTGTAGTTGGCGATTTTTTCGTATCTTATTTAGTTTTTGAGATACAACGGTAATCCGATCTCTACACATCTAAACCAGTCAAATTTTCAGTCCGAAGGTGGCTCTGGCTCCGAGAACAGTCTCCTGCTCGCCATGAAGGCCCTCGCCAGCATGCACATCCTTCTCTTCTTCATCTCGGTCGTCGTGATGGGCGGTGGCGCYGGCCTCGTCTTCAGCTTCCTCTATTGGCATCTCCAAGACATCGGAGGCTCTCCAGTCCTGTTTGGAATCCTCTCCGTCGTCAATCATGCATCAGAGATTATCACCTACTTCTATGTCTTCAAACTCATCAATAAGGTAGGTATCGAGGGCAAAAATATCGAAAATGGAAATGCAGCGAGAAGGAATTGAACTCGTGAGCTCTCGATCCAAAACCAGGCGCTCTATCCACTGCGCCGTGTGCTGTGGCGCAGTGGATAGAGCTTTTCGCTTTGAAGCAAGAGCCCGCGAGCTCAATTCCTTCCAGCGTCAGTTAGGTTGTTTTTTAATCGTTTTCCATCCCCTTTTATCACTATTTTCCAGTACGGCCATGTGCGCGTTATGTATCTCTGCCTCGCTGTCAACTTCTTCCGTTTCATGGCCCTCTCGATCCTGGACAACCCGTGGATGGTCCTCCCGCTTCAGGTTTTGCAAGGTAAATTTCACTTTAAAAATGAATTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>499 280 221</canonical_bands>
                <polymorphic_bands>720 280</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTAAACCAGTCAAATTTTCAGTC</pcr_primer_p1>
		<pcr_primer_p2>GACATAGAAGTAGGTGATAATCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTAAACCAGTCAAATTTTCAGTCCGAAGGTGGCTCTGGCTCCGAGAACAGTCTCCTGCTCGCCATGAAGGCCCTCGCCAGCATGCACATCCTTCTCTTCTTCATCTCGGTCGTCGTGATGGGCGGTGGCGCTGGCCTCGTCTTCAGCTTCCTCTATTGGCATCTCCAAGACATCGGAGGCTCTCCAGTCCTGTTTGGAATCCTCTCCGTCGTCAATCATGCATCAGAGATTATCACCTACTTCTATGTC</canonical_amplicon>
		<polymorphic_amplicon>CTAAACCAGTCAAATTTTCAGTCCGAAGGTGGCTCTGGCTCCGAGAACAGTCTCCTGCTCGCCATGAAGGCCCTCGCCAGCATGCACATCCTTCTCTTCTTCATCTCGGTCGTCGTGATGGGCGGTGGCGCYGGCCTCGTCTTCAGCTTCCTCTATTGGCATCTCCAAGACATCGGAGGCTCTCCAGTCCTGTTTGGAATCCTCTCCGTCGTCAATCATGCATCAGAGATTATCACCTACTTCTATGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39114</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>170179</contig_pos>
        <strand></strand>
        <context>AGATAAAAAA[C/T]GCATCCTTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATGATAAATGTTAGAGCTTCCTTTGGACACTCGCGATTGAGATAAAAAA</left_flank>
        <right_flank>GCATCCTTTGAACAGGGTCTTGATATTCTTGGCTTCTTTGACTTTCTGTG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCTTTGGCTTTTCTGGCTTGACCTCCTTTCTGCGCATCGGCAGCTCGTCCATGGTCTTTGGAATAGCGGCTTCGAGCTCGGAGACGTCTGGAAATTAGGATTCTTTGATTATTCAGCTCATAAAATGAAATTGTTCGATTAAAAACCTATACTCACCCTTGCCCATGCTTCTCAACTCCTCCAATCGTTCAAATGGAATGTAGTCTCCAGCCTTTTCAGATGTAAACGGCGAGAAATGTGGTGGCAGTGCAACTCCTGGCATATACCTCTCCGTTGGCAACTTTCTACGAGCATTCAAGCAATCGAACACCCACTGTGGCTGTACATAGAGTCGATTTACTTCTAACTTGTCCATTGGCCGATCTACGATGTGATGTGTGATGTTTTTGCTATCAGCTTTCAAATCATTCGGTGCTCCTTCCCATCCAACAACTCCACCTCCGTTTCTAATGATAAATGTTAGAGCTTCCTTTGGACACTCGCGATTGAGATAAAAAACGCATCCTTTGAACAGGGTCTTGATATTCTTGGCTTCTTTGACTTTCTGTGCAAGAGCATCAGAATCTTCTCCGAGAAGATCCAATGGCTCATCATCTTCGGTCTGCTCCACATCCTTTCTTTTCGCCAATGGCTTCGCCAAACTGTACACCTTTTCCTTATATTCCTCACTTTCCATCTCATCTCCTTCAACAACCTGTCCGATCTGTGGTGGATAGAAGAGTCCAATGTCCTGGTAGAGTTTGAAGTTGACGAATCCCAACATGGCGATGTAGAACTCAACGAACGTCACCAAAACGGTGAAGTCGACGTCGGTGACGTGTGGAAGACCACGCTCGTGTGGCACGACCCATGTGATCTTCTCACCGTGGACTTCAGCCTGGTAGTAGATTCCCTTGATAGAAATGAAGGTGTTGCGGAGAGATTGAGACTCGATCACATAGTGCATGAATTCGGCAGTCAGCTTACGACAGCTGTCGATCATTCCTTCCTTGAGAACTC</canonical>
            <polymorphic>CCCTTTGGCTTTTCTGGCTTGACCTCCTTTCTGCGCATCGGCAGCTCGTCCATGGTCTTTGGAATAGCGGCTTCGAGCTCGGAGACGTCTGGAAATTAGGATTCTTTGATTATTCAGCTCATAAAATGAAATTGTTCGATTAAAAACCTATACTCACCCTTGCCCATGCTTCTCAACTCCTCCAATCGTTCAAATGGAATGTAGTCTCCAGCCTTTTCAGATGTAAACGGCGAGAAATGTGGTGGCAGTGCAACTCCTGGCATATACCTCTCCGTTGGCAACTTTCTACGAGCATTCAAGCAATCGAACACCCACTGTGGCTGTACATAGAGTCGATTTACTTCTAACTTGTCCATTGGCCGATCTACGATGTGATGTGTGATGTTTTTGCTATCAGCTTTCAAATCATTCGGTGCTCCTTCCCATCCAACAACTCCACCTCCGTTTCTAATGATAAATGTTAGAGCTTCCTTTGGACACTCGCGATTGAGATAAAAAAYGCATCCTTTGAACAGGGTCTTGATATTCTTGGCTTCTTTGACTTTCTGTGCAAGAGCATCAGAATCTTCTCCGAGAAGATCCAATGGCTCATCATCTTCGGTCTGCTCCACATCCTTTCTTTTCGCCAATGGCTTCGCCAAACTGTACACCTTTTCCTTATATTCCTCACTTTCCATCTCATCTCCTTCAACAACCTGTCCGATCTGTGGTGGATAGAAGAGTCCAATGTCCTGGTAGAGTTTGAAGTTGACGAATCCCAACATGGCGATGTAGAACTCAACGAACGTCACCAAAACGGTGAAGTCGACGTCGGTGACGTGTGGAAGACCACGCTCGTGTGGCACGACCCATGTGATCTTCTCACCGTGGACTTCAGCCTGGTAGTAGATTCCCTTGATAGAAATGAAGGTGTTGCGGAGAGATTGAGACTCGATCACATAGTGCATGAATTCGGCAGTCAGCTTACGACAGCTGTCGATCATTCCTTCCTTGAGAACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCCGTTTCTAATGATAAATGTT</pcr_primer_p1>
		<pcr_primer_p2>GAAGGAGATGAGATGGAAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCCGTTTCTAATGATAAATGTTAGAGCTTCCTTTGGACACTCGCGATTGAGATAAAAAACGCATCCTTTGAACAGGGTCTTGATATTCTTGGCTTCTTTGACTTTCTGTGCAAGAGCATCAGAATCTTCTCCGAGAAGATCCAATGGCTCATCATCTTCGGTCTGCTCCACATCCTTTCTTTTCGCCAATGGCTTCGCCAAACTGTACACCTTTTCCTTATATTCCTCACTTTCCATCTCATCTCCTTC</canonical_amplicon>
		<polymorphic_amplicon>CTCCGTTTCTAATGATAAATGTTAGAGCTTCCTTTGGACACTCGCGATTGAGATAAAAAAYGCATCCTTTGAACAGGGTCTTGATATTCTTGGCTTCTTTGACTTTCTGTGCAAGAGCATCAGAATCTTCTCCGAGAAGATCCAATGGCTCATCATCTTCGGTCTGCTCCACATCCTTTCTTTTCGCCAATGGCTTCGCCAAACTGTACACCTTTTCCTTATATTCCTCACTTTCCATCTCATCTCCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39115</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>204052</contig_pos>
        <strand>+</strand>
        <context>CAAAACTTCC[A/G]AATCTTGACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAATCCAACTATGATAGAATTCAGCTTTTCTCCATCTCTCAAAACTTCC</left_flank>
        <right_flank>AATCTTGACTCCTCCCCCTTTACCCCCAGCTGTTCCATTAGTGTTCCGTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTCCAATTCAAAAAAATTGGTGATTTTGATTTTTTCCATCTCAAAATCTGGAATCCCAAAAAATTCAGAAAGTTCAGAAATTTCGATTTTACAATTTTTTGAAATAGTGAATGGACGATTTCCAAGTTTCATGAAATCATAAATTTTTATTAAAATCTACGAAACTTCAAAAAAAGACTGGAAATCTAGAAGAAGATCCTACCATGGAAATATCTGAGAAAATCTTTAAAAGTGGGGTTTTTTTTAATTTCAGAATCCTCTAGAATTTCAGAACCTCAGAACTTCTAAAATCTGAATATCTCAGAGTCTCAGAATCTCAGAATCTGAGAATCTTAGAATCTCGGAATCTCAGAATCTCAGAATATCAGAATCTCAGAATCTCAGAATTCCAGAATCTTAGAATATCAGAATCTCAGAATCCAAGAATCCAAGAATATCAGAATCCTTTGAATCCAACTATGATAGAATTCAGCTTTTCTCCATCTCTCAAAACTTCCAAATCTTGACTCCTCCCCCTTTACCCCCAGCTGTTCCATTAGTGTTCCGTACCTCACCAGTCTGGCGCCACGACCGGAAATGCGCTAATCTCCGAATCATCATTATATCCACCTCATTGCTCTCTTATTATTATTATTATTATTCTACTTCTTCTTCTTTCCCGACAGTTTGGCGCCAAAACCACTCTACAGAGACAAATTTCGAAAAACGCGCCAAATGGGGAGAAGGAGATGTCGAAAATGTTTTGGAAAGAAGGAGTGGCAATGATCGATGTGTTTTCTTGAAAAGGGAAACTCCAACCCGCACATCTTCTTTTATACTTTTATCCACCAGAGGGAGAAGAAGAGGAAGAAGTAGGAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTACACAGTCAGATGATGATGATGATGTAGGAGTAGAAGGAAAGGGGGAACGAATGATTATGTCGATGGAACTGGAAGAGTAATCCTGGGTGAGACGGAAGAACTATG</canonical>
            <polymorphic>ACTTCCAATTCAAAAAAATTGGTGATTTTGATTTTTTCCATCTCAAAATCTGGAATCCCAAAAAATTCAGAAAGTTCAGAAATTTCGATTTTACAATTTTTTGAAATAGTGAATGGACGATTTCCAAGTTTCATGAAATCATAAATTTTTATTAAAATCTACGAAACTTCAAAAAAAGACTGGAAATCTAGAAGAAGATCCTACCATGGAAATATCTGAGAAAATCTTTAAAAGTGGGGTTTTTTTTAATTTCAGAATCCTCTAGAATTTCAGAACCTCAGAACTTCTAAAATCTGAATATCTCAGAGTCTCAGAATCTCAGAATCTGAGAATCTTAGAATCTCGGAATCTCAGAATCTCAGAATATCAGAATCTCAGAATCTCAGAATTCCAGAATCTTAGAATATCAGAATCTCAGAATCCAAGAATCCAAGAATATCAGAATCCTTTGAATCCAACTATGATAGAATTCAGCTTTTCTCCATCTCTCAAAACTTCCRAATCTTGACTCCTCCCCCTTTACCCCCAGCTGTTCCATTAGTGTTCCGTACCTCACCAGTCTGGCGCCACGACCGGAAATGCGCTAATCTCCGAATCATCATTATATCCACCTCATTGCTCTCTTATTATTATTATTATTATTCTACTTCTTCTTCTTTCCCGACAGTTTGGCGCCAAAACCACTCTACAGAGACAAATTTCGAAAAACGCGCCAAATGGGGAGAAGGAGATGTCGAAAATGTTTTGGAAAGAAGGAGTGGCAATGATCGATGTGTTTTCTTGAAAAGGGAAACTCCAACCCGCACATCTTCTTTTATACTTTTATCCACCAGAGGGAGAAGAAGAGGAAGAAGTAGGAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTACACAGTCAGATGATGATGATGATGTAGGAGTAGAAGGAAAGGGGGAACGAATGATTATGTCGATGGAACTGGAAGAGTAATCCTGGGTGAGACGGAAGAACTATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCTTTAAAAGTGGGGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GGATATAATGATGATTCGGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>387</pcr_amplicon_size>
		<canonical_amplicon>AATCTTTAAAAGTGGGGTTTTTTTTAATTTCAGAATCCTCTAGAATTTCAGAACCTCAGAACTTCTAAAATCTGAATATCTCAGAGTCTCAGAATCTCAGAATCTGAGAATCTTAGAATCTCGGAATCTCAGAATCTCAGAATATCAGAATCTCAGAATCTCAGAATTCCAGAATCTTAGAATATCAGAATCTCAGAATCCAAGAATCCAAGAATATCAGAATCCTTTGAATCCAACTATGATAGAATTCAGCTTTTCTCCATCTCTCAAAACTTCCAAATCTTGACTCCTCCCCCTTTACCCCCAGCTGTTCCATTAGTGTTCCGTACCTCACCAGTCTGGCGCCACGACCGGAAATGCGCTAATCTCCGAATCATCATTATATCC</canonical_amplicon>
		<polymorphic_amplicon>AATCTTTAAAAGTGGGGTTTTTTTTAATTTCAGAATCCTCTAGAATTTCAGAACCTCAGAACTTCTAAAATCTGAATATCTCAGAGTCTCAGAATCTCAGAATCTGAGAATCTTAGAATCTCGGAATCTCAGAATCTCAGAATATCAGAATCTCAGAATCTCAGAATTCCAGAATCTTAGAATATCAGAATCTCAGAATCCAAGAATCCAAGAATATCAGAATCCTTTGAATCCAACTATGATAGAATTCAGCTTTTCTCCATCTCTCAAAACTTCCRAATCTTGACTCCTCCCCCTTTACCCCCAGCTGTTCCATTAGTGTTCCGTACCTCACCAGTCTGGCGCCACGACCGGAAATGCGCTAATCTCCGAATCATCATTATATCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39116</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>204065</contig_pos>
        <strand>+</strand>
        <context>TCTTGACTCC[G/T]CCCCCTTTAC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GATAGAATTCAGCTTTTCTCCATCTCTCAAAACTTCCAAATCTTGACTCC</left_flank>
        <right_flank>CCCCCTTTACCCCCAGCTGTTCCATTAGTGTTCCGTACCTCACCAGTCTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATTGGTGATTTTGATTTTTTCCATCTCAAAATCTGGAATCCCAAAAAATTCAGAAAGTTCAGAAATTTCGATTTTACAATTTTTTGAAATAGTGAATGGACGATTTCCAAGTTTCATGAAATCATAAATTTTTATTAAAATCTACGAAACTTCAAAAAAAGACTGGAAATCTAGAAGAAGATCCTACCATGGAAATATCTGAGAAAATCTTTAAAAGTGGGGTTTTTTTTAATTTCAGAATCCTCTAGAATTTCAGAACCTCAGAACTTCTAAAATCTGAATATCTCAGAGTCTCAGAATCTCAGAATCTGAGAATCTTAGAATCTCGGAATCTCAGAATCTCAGAATATCAGAATCTCAGAATCTCAGAATTCCAGAATCTTAGAATATCAGAATCTCAGAATCCAAGAATCCAAGAATATCAGAATCCTTTGAATCCAACTATGATAGAATTCAGCTTTTCTCCATCTCTCAAAACTTCCAAATCTTGACTCCTCCCCCTTTACCCCCAGCTGTTCCATTAGTGTTCCGTACCTCACCAGTCTGGCGCCACGACCGGAAATGCGCTAATCTCCGAATCATCATTATATCCACCTCATTGCTCTCTTATTATTATTATTATTATTCTACTTCTTCTTCTTTCCCGACAGTTTGGCGCCAAAACCACTCTACAGAGACAAATTTCGAAAAACGCGCCAAATGGGGAGAAGGAGATGTCGAAAATGTTTTGGAAAGAAGGAGTGGCAATGATCGATGTGTTTTCTTGAAAAGGGAAACTCCAACCCGCACATCTTCTTTTATACTTTTATCCACCAGAGGGAGAAGAAGAGGAAGAAGTAGGAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTACACAGTCAGATGATGATGATGATGTAGGAGTAGAAGGAAAGGGGGAACGAATGATTATGTCGATGGAACTGGAAGAGTAATCCTGGGTGAGACGGAAGAACTATGGGAAATGAATGGA</canonical>
            <polymorphic>AAAAATTGGTGATTTTGATTTTTTCCATCTCAAAATCTGGAATCCCAAAAAATTCAGAAAGTTCAGAAATTTCGATTTTACAATTTTTTGAAATAGTGAATGGACGATTTCCAAGTTTCATGAAATCATAAATTTTTATTAAAATCTACGAAACTTCAAAAAAAGACTGGAAATCTAGAAGAAGATCCTACCATGGAAATATCTGAGAAAATCTTTAAAAGTGGGGTTTTTTTTAATTTCAGAATCCTCTAGAATTTCAGAACCTCAGAACTTCTAAAATCTGAATATCTCAGAGTCTCAGAATCTCAGAATCTGAGAATCTTAGAATCTCGGAATCTCAGAATCTCAGAATATCAGAATCTCAGAATCTCAGAATTCCAGAATCTTAGAATATCAGAATCTCAGAATCCAAGAATCCAAGAATATCAGAATCCTTTGAATCCAACTATGATAGAATTCAGCTTTTCTCCATCTCTCAAAACTTCCAAATCTTGACTCCKCCCCCTTTACCCCCAGCTGTTCCATTAGTGTTCCGTACCTCACCAGTCTGGCGCCACGACCGGAAATGCGCTAATCTCCGAATCATCATTATATCCACCTCATTGCTCTCTTATTATTATTATTATTATTCTACTTCTTCTTCTTTCCCGACAGTTTGGCGCCAAAACCACTCTACAGAGACAAATTTCGAAAAACGCGCCAAATGGGGAGAAGGAGATGTCGAAAATGTTTTGGAAAGAAGGAGTGGCAATGATCGATGTGTTTTCTTGAAAAGGGAAACTCCAACCCGCACATCTTCTTTTATACTTTTATCCACCAGAGGGAGAAGAAGAGGAAGAAGTAGGAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTACACAGTCAGATGATGATGATGATGTAGGAGTAGAAGGAAAGGGGGAACGAATGATTATGTCGATGGAACTGGAAGAGTAATCCTGGGTGAGACGGAAGAACTATGGGAAATGAATGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATAGAATTCAGCTTTTCTCC</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTCGAAATTTGTCTCTGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGATAGAATTCAGCTTTTCTCCATCTCTCAAAACTTCCAAATCTTGACTCCTCCCCCTTTACCCCCAGCTGTTCCATTAGTGTTCCGTACCTCACCAGTCTGGCGCCACGACCGGAAATGCGCTAATCTCCGAATCATCATTATATCCACCTCATTGCTCTCTTATTATTATTATTATTATTCTACTTCTTCTTCTTTCCCGACAGTTTGGCGCCAAAACCACTCTACAGAGACAAATTTCGAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>ATGATAGAATTCAGCTTTTCTCCATCTCTCAAAACTTCCAAATCTTGACTCCKCCCCCTTTACCCCCAGCTGTTCCATTAGTGTTCCGTACCTCACCAGTCTGGCGCCACGACCGGAAATGCGCTAATCTCCGAATCATCATTATATCCACCTCATTGCTCTCTTATTATTATTATTATTATTCTACTTCTTCTTCTTTCCCGACAGTTTGGCGCCAAAACCACTCTACAGAGACAAATTTCGAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39117</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>204096</contig_pos>
        <strand>+</strand>
        <context>TCCATTAGTG[C/T]TCCGTACCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTTCCAAATCTTGACTCCTCCCCCTTTACCCCCAGCTGTTCCATTAGTG</left_flank>
        <right_flank>TCCGTACCTCACCAGTCTGGCGCCACGACCGGAAATGCGCTAATCTCCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATCTGGAATCCCAAAAAATTCAGAAAGTTCAGAAATTTCGATTTTACAATTTTTTGAAATAGTGAATGGACGATTTCCAAGTTTCATGAAATCATAAATTTTTATTAAAATCTACGAAACTTCAAAAAAAGACTGGAAATCTAGAAGAAGATCCTACCATGGAAATATCTGAGAAAATCTTTAAAAGTGGGGTTTTTTTTAATTTCAGAATCCTCTAGAATTTCAGAACCTCAGAACTTCTAAAATCTGAATATCTCAGAGTCTCAGAATCTCAGAATCTGAGAATCTTAGAATCTCGGAATCTCAGAATCTCAGAATATCAGAATCTCAGAATCTCAGAATTCCAGAATCTTAGAATATCAGAATCTCAGAATCCAAGAATCCAAGAATATCAGAATCCTTTGAATCCAACTATGATAGAATTCAGCTTTTCTCCATCTCTCAAAACTTCCAAATCTTGACTCCTCCCCCTTTACCCCCAGCTGTTCCATTAGTGTTCCGTACCTCACCAGTCTGGCGCCACGACCGGAAATGCGCTAATCTCCGAATCATCATTATATCCACCTCATTGCTCTCTTATTATTATTATTATTATTCTACTTCTTCTTCTTTCCCGACAGTTTGGCGCCAAAACCACTCTACAGAGACAAATTTCGAAAAACGCGCCAAATGGGGAGAAGGAGATGTCGAAAATGTTTTGGAAAGAAGGAGTGGCAATGATCGATGTGTTTTCTTGAAAAGGGAAACTCCAACCCGCACATCTTCTTTTATACTTTTATCCACCAGAGGGAGAAGAAGAGGAAGAAGTAGGAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTACACAGTCAGATGATGATGATGATGTAGGAGTAGAAGGAAAGGGGGAACGAATGATTATGTCGATGGAACTGGAAGAGTAATCCTGGGTGAGACGGAAGAACTATGGGAAATGAATGGAGAAATGGAAAAATAAGGAGAAGAAATGGTTT</canonical>
            <polymorphic>AAAATCTGGAATCCCAAAAAATTCAGAAAGTTCAGAAATTTCGATTTTACAATTTTTTGAAATAGTGAATGGACGATTTCCAAGTTTCATGAAATCATAAATTTTTATTAAAATCTACGAAACTTCAAAAAAAGACTGGAAATCTAGAAGAAGATCCTACCATGGAAATATCTGAGAAAATCTTTAAAAGTGGGGTTTTTTTTAATTTCAGAATCCTCTAGAATTTCAGAACCTCAGAACTTCTAAAATCTGAATATCTCAGAGTCTCAGAATCTCAGAATCTGAGAATCTTAGAATCTCGGAATCTCAGAATCTCAGAATATCAGAATCTCAGAATCTCAGAATTCCAGAATCTTAGAATATCAGAATCTCAGAATCCAAGAATCCAAGAATATCAGAATCCTTTGAATCCAACTATGATAGAATTCAGCTTTTCTCCATCTCTCAAAACTTCCAAATCTTGACTCCTCCCCCTTTACCCCCAGCTGTTCCATTAGTGYTCCGTACCTCACCAGTCTGGCGCCACGACCGGAAATGCGCTAATCTCCGAATCATCATTATATCCACCTCATTGCTCTCTTATTATTATTATTATTATTCTACTTCTTCTTCTTTCCCGACAGTTTGGCGCCAAAACCACTCTACAGAGACAAATTTCGAAAAACGCGCCAAATGGGGAGAAGGAGATGTCGAAAATGTTTTGGAAAGAAGGAGTGGCAATGATCGATGTGTTTTCTTGAAAAGGGAAACTCCAACCCGCACATCTTCTTTTATACTTTTATCCACCAGAGGGAGAAGAAGAGGAAGAAGTAGGAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTACACAGTCAGATGATGATGATGATGTAGGAGTAGAAGGAAAGGGGGAACGAATGATTATGTCGATGGAACTGGAAGAGTAATCCTGGGTGAGACGGAAGAACTATGGGAAATGAATGGAGAAATGGAAAAATAAGGAGAAGAAATGGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATAGAATTCAGCTTTTCTCC</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTCGAAATTTGTCTCTGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGATAGAATTCAGCTTTTCTCCATCTCTCAAAACTTCCAAATCTTGACTCCTCCCCCTTTACCCCCAGCTGTTCCATTAGTGTTCCGTACCTCACCAGTCTGGCGCCACGACCGGAAATGCGCTAATCTCCGAATCATCATTATATCCACCTCATTGCTCTCTTATTATTATTATTATTATTCTACTTCTTCTTCTTTCCCGACAGTTTGGCGCCAAAACCACTCTACAGAGACAAATTTCGAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>ATGATAGAATTCAGCTTTTCTCCATCTCTCAAAACTTCCAAATCTTGACTCCTCCCCCTTTACCCCCAGCTGTTCCATTAGTGYTCCGTACCTCACCAGTCTGGCGCCACGACCGGAAATGCGCTAATCTCCGAATCATCATTATATCCACCTCATTGCTCTCTTATTATTATTATTATTATTCTACTTCTTCTTCTTTCCCGACAGTTTGGCGCCAAAACCACTCTACAGAGACAAATTTCGAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39118</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>204137</contig_pos>
        <strand>+</strand>
        <context>GGAAATGCGC[C/T]AATCTCCGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCATTAGTGTTCCGTACCTCACCAGTCTGGCGCCACGACCGGAAATGCGC</left_flank>
        <right_flank>AATCTCCGAATCATCATTATATCCACCTCATTGCTCTCTTATTATTATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATTTTACAATTTTTTGAAATAGTGAATGGACGATTTCCAAGTTTCATGAAATCATAAATTTTTATTAAAATCTACGAAACTTCAAAAAAAGACTGGAAATCTAGAAGAAGATCCTACCATGGAAATATCTGAGAAAATCTTTAAAAGTGGGGTTTTTTTTAATTTCAGAATCCTCTAGAATTTCAGAACCTCAGAACTTCTAAAATCTGAATATCTCAGAGTCTCAGAATCTCAGAATCTGAGAATCTTAGAATCTCGGAATCTCAGAATCTCAGAATATCAGAATCTCAGAATCTCAGAATTCCAGAATCTTAGAATATCAGAATCTCAGAATCCAAGAATCCAAGAATATCAGAATCCTTTGAATCCAACTATGATAGAATTCAGCTTTTCTCCATCTCTCAAAACTTCCAAATCTTGACTCCTCCCCCTTTACCCCCAGCTGTTCCATTAGTGTTCCGTACCTCACCAGTCTGGCGCCACGACCGGAAATGCGCTAATCTCCGAATCATCATTATATCCACCTCATTGCTCTCTTATTATTATTATTATTATTCTACTTCTTCTTCTTTCCCGACAGTTTGGCGCCAAAACCACTCTACAGAGACAAATTTCGAAAAACGCGCCAAATGGGGAGAAGGAGATGTCGAAAATGTTTTGGAAAGAAGGAGTGGCAATGATCGATGTGTTTTCTTGAAAAGGGAAACTCCAACCCGCACATCTTCTTTTATACTTTTATCCACCAGAGGGAGAAGAAGAGGAAGAAGTAGGAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTACACAGTCAGATGATGATGATGATGTAGGAGTAGAAGGAAAGGGGGAACGAATGATTATGTCGATGGAACTGGAAGAGTAATCCTGGGTGAGACGGAAGAACTATGGGAAATGAATGGAGAAATGGAAAAATAAGGAGAAGAAATGGTTTTTTCAGAAATTAGGGGAGGGGACCTCTAGGAGTTGAACTTG</canonical>
            <polymorphic>CGATTTTACAATTTTTTGAAATAGTGAATGGACGATTTCCAAGTTTCATGAAATCATAAATTTTTATTAAAATCTACGAAACTTCAAAAAAAGACTGGAAATCTAGAAGAAGATCCTACCATGGAAATATCTGAGAAAATCTTTAAAAGTGGGGTTTTTTTTAATTTCAGAATCCTCTAGAATTTCAGAACCTCAGAACTTCTAAAATCTGAATATCTCAGAGTCTCAGAATCTCAGAATCTGAGAATCTTAGAATCTCGGAATCTCAGAATCTCAGAATATCAGAATCTCAGAATCTCAGAATTCCAGAATCTTAGAATATCAGAATCTCAGAATCCAAGAATCCAAGAATATCAGAATCCTTTGAATCCAACTATGATAGAATTCAGCTTTTCTCCATCTCTCAAAACTTCCAAATCTTGACTCCTCCCCCTTTACCCCCAGCTGTTCCATTAGTGTTCCGTACCTCACCAGTCTGGCGCCACGACCGGAAATGCGCYAATCTCCGAATCATCATTATATCCACCTCATTGCTCTCTTATTATTATTATTATTATTCTACTTCTTCTTCTTTCCCGACAGTTTGGCGCCAAAACCACTCTACAGAGACAAATTTCGAAAAACGCGCCAAATGGGGAGAAGGAGATGTCGAAAATGTTTTGGAAAGAAGGAGTGGCAATGATCGATGTGTTTTCTTGAAAAGGGAAACTCCAACCCGCACATCTTCTTTTATACTTTTATCCACCAGAGGGAGAAGAAGAGGAAGAAGTAGGAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTACACAGTCAGATGATGATGATGATGTAGGAGTAGAAGGAAAGGGGGAACGAATGATTATGTCGATGGAACTGGAAGAGTAATCCTGGGTGAGACGGAAGAACTATGGGAAATGAATGGAGAAATGGAAAAATAAGGAGAAGAAATGGTTTTTTCAGAAATTAGGGGAGGGGACCTCTAGGAGTTGAACTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATAGAATTCAGCTTTTCTCC</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTCGAAATTTGTCTCTGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGATAGAATTCAGCTTTTCTCCATCTCTCAAAACTTCCAAATCTTGACTCCTCCCCCTTTACCCCCAGCTGTTCCATTAGTGTTCCGTACCTCACCAGTCTGGCGCCACGACCGGAAATGCGCTAATCTCCGAATCATCATTATATCCACCTCATTGCTCTCTTATTATTATTATTATTATTCTACTTCTTCTTCTTTCCCGACAGTTTGGCGCCAAAACCACTCTACAGAGACAAATTTCGAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>ATGATAGAATTCAGCTTTTCTCCATCTCTCAAAACTTCCAAATCTTGACTCCTCCCCCTTTACCCCCAGCTGTTCCATTAGTGTTCCGTACCTCACCAGTCTGGCGCCACGACCGGAAATGCGCYAATCTCCGAATCATCATTATATCCACCTCATTGCTCTCTTATTATTATTATTATTATTCTACTTCTTCTTCTTTCCCGACAGTTTGGCGCCAAAACCACTCTACAGAGACAAATTTCGAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39119</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>204166</contig_pos>
        <strand>+</strand>
        <context>ATATCCACCT[C/T]ATTGCTCTCt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCGCCACGACCGGAAATGCGCTAATCTCCGAATCATCATTATATCCACCT</left_flank>
        <right_flank>ATTGCTCTCTTATTATTATTATTATTATTCTACTTCTTCTTCTTTCCCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGACGATTTCCAAGTTTCATGAAATCATAAATTTTTATTAAAATCTACGAAACTTCAAAAAAAGACTGGAAATCTAGAAGAAGATCCTACCATGGAAATATCTGAGAAAATCTTTAAAAGTGGGGTTTTTTTTAATTTCAGAATCCTCTAGAATTTCAGAACCTCAGAACTTCTAAAATCTGAATATCTCAGAGTCTCAGAATCTCAGAATCTGAGAATCTTAGAATCTCGGAATCTCAGAATCTCAGAATATCAGAATCTCAGAATCTCAGAATTCCAGAATCTTAGAATATCAGAATCTCAGAATCCAAGAATCCAAGAATATCAGAATCCTTTGAATCCAACTATGATAGAATTCAGCTTTTCTCCATCTCTCAAAACTTCCAAATCTTGACTCCTCCCCCTTTACCCCCAGCTGTTCCATTAGTGTTCCGTACCTCACCAGTCTGGCGCCACGACCGGAAATGCGCTAATCTCCGAATCATCATTATATCCACCTCATTGCTCTCTTATTATTATTATTATTATTCTACTTCTTCTTCTTTCCCGACAGTTTGGCGCCAAAACCACTCTACAGAGACAAATTTCGAAAAACGCGCCAAATGGGGAGAAGGAGATGTCGAAAATGTTTTGGAAAGAAGGAGTGGCAATGATCGATGTGTTTTCTTGAAAAGGGAAACTCCAACCCGCACATCTTCTTTTATACTTTTATCCACCAGAGGGAGAAGAAGAGGAAGAAGTAGGAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTACACAGTCAGATGATGATGATGATGTAGGAGTAGAAGGAAAGGGGGAACGAATGATTATGTCGATGGAACTGGAAGAGTAATCCTGGGTGAGACGGAAGAACTATGGGAAATGAATGGAGAAATGGAAAAATAAGGAGAAGAAATGGTTTTTTCAGAAATTAGGGGAGGGGACCTCTAGGAGTTGAACTTGTGGTCCGATTGCTGGAGGTGCCGTGTCGC</canonical>
            <polymorphic>GGACGATTTCCAAGTTTCATGAAATCATAAATTTTTATTAAAATCTACGAAACTTCAAAAAAAGACTGGAAATCTAGAAGAAGATCCTACCATGGAAATATCTGAGAAAATCTTTAAAAGTGGGGTTTTTTTTAATTTCAGAATCCTCTAGAATTTCAGAACCTCAGAACTTCTAAAATCTGAATATCTCAGAGTCTCAGAATCTCAGAATCTGAGAATCTTAGAATCTCGGAATCTCAGAATCTCAGAATATCAGAATCTCAGAATCTCAGAATTCCAGAATCTTAGAATATCAGAATCTCAGAATCCAAGAATCCAAGAATATCAGAATCCTTTGAATCCAACTATGATAGAATTCAGCTTTTCTCCATCTCTCAAAACTTCCAAATCTTGACTCCTCCCCCTTTACCCCCAGCTGTTCCATTAGTGTTCCGTACCTCACCAGTCTGGCGCCACGACCGGAAATGCGCTAATCTCCGAATCATCATTATATCCACCTYATTGCTCTCTTATTATTATTATTATTATTCTACTTCTTCTTCTTTCCCGACAGTTTGGCGCCAAAACCACTCTACAGAGACAAATTTCGAAAAACGCGCCAAATGGGGAGAAGGAGATGTCGAAAATGTTTTGGAAAGAAGGAGTGGCAATGATCGATGTGTTTTCTTGAAAAGGGAAACTCCAACCCGCACATCTTCTTTTATACTTTTATCCACCAGAGGGAGAAGAAGAGGAAGAAGTAGGAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTACACAGTCAGATGATGATGATGATGTAGGAGTAGAAGGAAAGGGGGAACGAATGATTATGTCGATGGAACTGGAAGAGTAATCCTGGGTGAGACGGAAGAACTATGGGAAATGAATGGAGAAATGGAAAAATAAGGAGAAGAAATGGTTTTTTCAGAAATTAGGGGAGGGGACCTCTAGGAGTTGAACTTGTGGTCCGATTGCTGGAGGTGCCGTGTCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATAGAATTCAGCTTTTCTCC</pcr_primer_p1>
		<pcr_primer_p2>GTTTTTCGAAATTTGTCTCTGTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATGATAGAATTCAGCTTTTCTCCATCTCTCAAAACTTCCAAATCTTGACTCCTCCCCCTTTACCCCCAGCTGTTCCATTAGTGTTCCGTACCTCACCAGTCTGGCGCCACGACCGGAAATGCGCTAATCTCCGAATCATCATTATATCCACCTCATTGCTCTCTTATTATTATTATTATTATTCTACTTCTTCTTCTTTCCCGACAGTTTGGCGCCAAAACCACTCTACAGAGACAAATTTCGAAAAAC</canonical_amplicon>
		<polymorphic_amplicon>ATGATAGAATTCAGCTTTTCTCCATCTCTCAAAACTTCCAAATCTTGACTCCTCCCCCTTTACCCCCAGCTGTTCCATTAGTGTTCCGTACCTCACCAGTCTGGCGCCACGACCGGAAATGCGCTAATCTCCGAATCATCATTATATCCACCTYATTGCTCTCTTATTATTATTATTATTATTCTACTTCTTCTTCTTTCCCGACAGTTTGGCGCCAAAACCACTCTACAGAGACAAATTTCGAAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39120</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>248554</contig_pos>
        <strand></strand>
        <context>agtaaaatag[G/A]taggcctcgt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATGCCGTGTTTCAAATTAAAGATGATGAAAAGGGGTGTAAGTAAAATAG</left_flank>
        <right_flank>TAGGCCTCGTTGGGGCTGATACTACGCGCCAACGCATAACTCAGCTCAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTAAAAAAGACTACTCTTAATTTCAGTATGAAATCACTTAAATATCGTTCGATTTGCGAAAAAAAATAATCTCGAAAGCTTCACATTTCTATATTCTTCGGCAGATTAAAAAATAGTTGAAAATGCACCACCCAGGTTCGCTACTGTGTAGCTCAGCAGACATTCAAAGTTTAAGTCAATTTATCTCGGTTCGTGCAAGAGTAGGAAAAGAAGACAAAAATTTTGGCAAAAATATGTTTTTAATGTAGTCAATTTTTTAGTGCAACTGAAATCTGCAAAAATTCTAAAGATCTCAAAGTCACTGGCCAATCGATCGTGCTGGCGCCGACCCAGCCTCCAGCCGCCGACGCATATCTCAGCTCAAACTTAGAATTTCTGCACAAAATAACAACCAAAAGAGTAGACTTTGGCAAGATCTACAAAATAATCTAAAATTCAACTATATTACAATGCCGTGTTTCAAATTAAAGATGATGAAAAGGGGTGTAAGTAAAATAGGTAGGCCTCGTTGGGGCTGATACTACGCGCCAACGCATAACTCAGCTCAAACTTAGAATATCTTCACAAATTAAAAATTATAAAATAGAACTGGAAAAGATCTATAAAATGATAGTAAATTCGACTATATTGAACTGCCAAGTCTTGACTCAGAGACGGTCGAAAGAAGTGTTAGCCTAACCGACACCCGGAGGCTCCAACCTCGTTTGCGGTCCTCTAGTTTAAAACTGGCCTTTTTAATATGATTGAATTAAATATCATTTTGTAGATCTCGCTCAGTTCTACTGTTTAAGATATAAATCATACGGAAATTCCAGGTTTCAGCTGAGTTATGCGTCGGCGCACAGTGAGGACCGGGTGGGTGCCAACGAGATCGGCGCCCCTGGGTGCCGATTTTGCCTATCCGTTTTTCACCGTTTTAGAGTCAAAACTAGGTATTTTATTATGGTTGAATTATGTATCATTTTGTAGATTTCATTGAGTTCTATATTTTACAACTTA</canonical>
            <polymorphic>GTTAAAAAAGACTACTCTTAATTTCAGTATGAAATCACTTAAATATCGTTCGATTTGCGAAAAAAAATAATCTCGAAAGCTTCACATTTCTATATTCTTCGGCAGATTAAAAAATAGTTGAAAATGCACCACCCAGGTTCGCTACTGTGTAGCTCAGCAGACATTCAAAGTTTAAGTCAATTTATCTCGGTTCGTGCAAGAGTAGGAAAAGAAGACAAAAATTTTGGCAAAAATATGTTTTTAATGTAGTCAATTTTTTAGTGCAACTGAAATCTGCAAAAATTCTAAAGATCTCAAAGTCACTGGCCAATCGATCGTGCTGGCGCCGACCCAGCCTCCAGCCGCCGACGCATATCTCAGCTCAAACTTAGAATTTCTGCACAAAATAACAACCAAAAGAGTAGACTTTGGCAAGATCTACAAAATAATCTAAAATTCAACTATATTACAATGCCGTGTTTCAAATTAAAGATGATGAAAAGGGGTGTAAGTAAAATAGRTAGGCCTCGTTGGGGCTGATACTACGCGCCAACGCATAACTCAGCTCAAACTTAGAATATCTTCACAAATTAAAAATTATAAAATAGAACTGGAAAAGATCTATAAAATGATAGTAAATTCGACTATATTGAACTGCCAAGTCTTGACTCAGAGACGGTCGAAAGAAGTGTTAGCCTAACCGACACCCGGAGGCTCCAACCTCGTTTGCGGTCCTCTAGTTTAAAACTGGCCTTTTTAATATGATTGAATTAAATATCATTTTGTAGATCTCGCTCAGTTCTACTGTTTAAGATATAAATCATACGGAAATTCCAGGTTTCAGCTGAGTTATGCGTCGGCGCACAGTGAGGACCGGGTGGGTGCCAACGAGATCGGCGCCCCTGGGTGCCGATTTTGCCTATCCGTTTTTCACCGTTTTAGAGTCAAAACTAGGTATTTTATTATGGTTGAATTATGTATCATTTTGTAGATTTCATTGAGTTCTATATTTTACAACTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAAAGATCTCAAAGTCACTGG</pcr_primer_p1>
		<pcr_primer_p2>ACTTCTACTCATTGGCTTGTAAC</pcr_primer_p2>
		<pcr_amplicon_size>782</pcr_amplicon_size>
		<canonical_amplicon>TCTAAAGATCTCAAAGTCACTGGCCAATCGATCGTGCTGGCGCCGACCCAGCCTCCAGCCGCCGACGCATATCTCAGCTCAAACTTAGAATTTCTGCACAAAATAACAACCAAAAGAGTAGACTTTGGCAAGATCTACAAAATAATCTAAAATTCAACTATATTACAATGCCGTGTTTCAAATTAAAGATGATGAAAAGGGGTGTAAGTAAAATAGGTAGGCCTCGTTGGGGCTGATAC</canonical_amplicon>
		<polymorphic_amplicon>TCTAAAGATCTCAAAGTCACTGGCCAATCGATCGTGCTGGCGCCGACCCAGCCTCCAGCCGCCGACGCATATCTCAGCTCAAACTTAGAATTTCTGCACAAAATAACAACCAAAAGAGTAGACTTTGGCAAGATCTACAAAATAATCTAAAATTCAACTATATTACAATGCCGTGTTTCAAATTAAAGATGATGAAAAGGGGTGTAAGTAAAATAGRTAGGCCTCGTTGGGGCTGATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39121</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>248611</contig_pos>
        <strand></strand>
        <context>caaacttaga[A/G]tatcttcaca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGTTGGGGCTGATACTACGCGCCAACGCATAACTCAGCTCAAACTTAGA</left_flank>
        <right_flank>TATCTTCACAAATTAAAAATTATAAAATAGAACTGGAAAAGATCTATAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAAAAAAAATAATCTCGAAAGCTTCACATTTCTATATTCTTCGGCAGATTAAAAAATAGTTGAAAATGCACCACCCAGGTTCGCTACTGTGTAGCTCAGCAGACATTCAAAGTTTAAGTCAATTTATCTCGGTTCGTGCAAGAGTAGGAAAAGAAGACAAAAATTTTGGCAAAAATATGTTTTTAATGTAGTCAATTTTTTAGTGCAACTGAAATCTGCAAAAATTCTAAAGATCTCAAAGTCACTGGCCAATCGATCGTGCTGGCGCCGACCCAGCCTCCAGCCGCCGACGCATATCTCAGCTCAAACTTAGAATTTCTGCACAAAATAACAACCAAAAGAGTAGACTTTGGCAAGATCTACAAAATAATCTAAAATTCAACTATATTACAATGCCGTGTTTCAAATTAAAGATGATGAAAAGGGGTGTAAGTAAAATAGGTAGGCCTCGTTGGGGCTGATACTACGCGCCAACGCATAACTCAGCTCAAACTTAGAATATCTTCACAAATTAAAAATTATAAAATAGAACTGGAAAAGATCTATAAAATGATAGTAAATTCGACTATATTGAACTGCCAAGTCTTGACTCAGAGACGGTCGAAAGAAGTGTTAGCCTAACCGACACCCGGAGGCTCCAACCTCGTTTGCGGTCCTCTAGTTTAAAACTGGCCTTTTTAATATGATTGAATTAAATATCATTTTGTAGATCTCGCTCAGTTCTACTGTTTAAGATATAAATCATACGGAAATTCCAGGTTTCAGCTGAGTTATGCGTCGGCGCACAGTGAGGACCGGGTGGGTGCCAACGAGATCGGCGCCCCTGGGTGCCGATTTTGCCTATCCGTTTTTCACCGTTTTAGAGTCAAAACTAGGTATTTTATTATGGTTGAATTATGTATCATTTTGTAGATTTCATTGAGTTCTATATTTTACAACTTAATTTTAACAGAAATTCCAAGTTTGAAACGAGGTAATAGTCGCGTTACAAGCCAATGA</canonical>
            <polymorphic>CGAAAAAAAATAATCTCGAAAGCTTCACATTTCTATATTCTTCGGCAGATTAAAAAATAGTTGAAAATGCACCACCCAGGTTCGCTACTGTGTAGCTCAGCAGACATTCAAAGTTTAAGTCAATTTATCTCGGTTCGTGCAAGAGTAGGAAAAGAAGACAAAAATTTTGGCAAAAATATGTTTTTAATGTAGTCAATTTTTTAGTGCAACTGAAATCTGCAAAAATTCTAAAGATCTCAAAGTCACTGGCCAATCGATCGTGCTGGCGCCGACCCAGCCTCCAGCCGCCGACGCATATCTCAGCTCAAACTTAGAATTTCTGCACAAAATAACAACCAAAAGAGTAGACTTTGGCAAGATCTACAAAATAATCTAAAATTCAACTATATTACAATGCCGTGTTTCAAATTAAAGATGATGAAAAGGGGTGTAAGTAAAATAGGTAGGCCTCGTTGGGGCTGATACTACGCGCCAACGCATAACTCAGCTCAAACTTAGARTATCTTCACAAATTAAAAATTATAAAATAGAACTGGAAAAGATCTATAAAATGATAGTAAATTCGACTATATTGAACTGCCAAGTCTTGACTCAGAGACGGTCGAAAGAAGTGTTAGCCTAACCGACACCCGGAGGCTCCAACCTCGTTTGCGGTCCTCTAGTTTAAAACTGGCCTTTTTAATATGATTGAATTAAATATCATTTTGTAGATCTCGCTCAGTTCTACTGTTTAAGATATAAATCATACGGAAATTCCAGGTTTCAGCTGAGTTATGCGTCGGCGCACAGTGAGGACCGGGTGGGTGCCAACGAGATCGGCGCCCCTGGGTGCCGATTTTGCCTATCCGTTTTTCACCGTTTTAGAGTCAAAACTAGGTATTTTATTATGGTTGAATTATGTATCATTTTGTAGATTTCATTGAGTTCTATATTTTACAACTTAATTTTAACAGAAATTCCAAGTTTGAAACGAGGTAATAGTCGCGTTACAAGCCAATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTAAAGATCTCAAAGTCACTGG</pcr_primer_p1>
		<pcr_primer_p2>ACTTCTACTCATTGGCTTGTAAC</pcr_primer_p2>
		<pcr_amplicon_size>782</pcr_amplicon_size>
		<canonical_amplicon>TCTAAAGATCTCAAAGTCACTGGCCAATCGATCGTGCTGGCGCCGACCCAGCCTCCAGCCGCCGACGCATATCTCAGCTCAAACTTAGAATTTCTGCACAAAATAACAACCAAAAGAGTAGACTTTGGCAAGATCTACAAAATAATCTAAAATTCAACTATATTACAATGCCGTGTTTCAAATTAAAGATGATGAAAAGGGGTGTAAGTAAAATAGGTAGGCCTCGTTGGGGCTGATACTACGCGCCAACGCATAACTCAGCTCAAACTTAGAATATCTTCACAAATTAAAAATTA</canonical_amplicon>
		<polymorphic_amplicon>TCTAAAGATCTCAAAGTCACTGGCCAATCGATCGTGCTGGCGCCGACCCAGCCTCCAGCCGCCGACGCATATCTCAGCTCAAACTTAGAATTTCTGCACAAAATAACAACCAAAAGAGTAGACTTTGGCAAGATCTACAAAATAATCTAAAATTCAACTATATTACAATGCCGTGTTTCAAATTAAAGATGATGAAAAGGGGTGTAAGTAAAATAGGTAGGCCTCGTTGGGGCTGATACTACGCGCCAACGCATAACTCAGCTCAAACTTAGARTATCTTCACAAATTAAAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39122</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>248668</contig_pos>
        <strand></strand>
        <context>taaaatgata[G/T]taaattcgac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CACAAATTAAAAATTATAAAATAGAACTGGAAAAGATCTATAAAATGATA</left_flank>
        <right_flank>TAAATTCGACTATATTGAACTGCCAAGTCTTGACTCAGAGACGGTCGAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTTGAAAATGCACCACCCAGGTTCGCTACTGTGTAGCTCAGCAGACATTCAAAGTTTAAGTCAATTTATCTCGGTTCGTGCAAGAGTAGGAAAAGAAGACAAAAATTTTGGCAAAAATATGTTTTTAATGTAGTCAATTTTTTAGTGCAACTGAAATCTGCAAAAATTCTAAAGATCTCAAAGTCACTGGCCAATCGATCGTGCTGGCGCCGACCCAGCCTCCAGCCGCCGACGCATATCTCAGCTCAAACTTAGAATTTCTGCACAAAATAACAACCAAAAGAGTAGACTTTGGCAAGATCTACAAAATAATCTAAAATTCAACTATATTACAATGCCGTGTTTCAAATTAAAGATGATGAAAAGGGGTGTAAGTAAAATAGGTAGGCCTCGTTGGGGCTGATACTACGCGCCAACGCATAACTCAGCTCAAACTTAGAATATCTTCACAAATTAAAAATTATAAAATAGAACTGGAAAAGATCTATAAAATGATAGTAAATTCGACTATATTGAACTGCCAAGTCTTGACTCAGAGACGGTCGAAAGAAGTGTTAGCCTAACCGACACCCGGAGGCTCCAACCTCGTTTGCGGTCCTCTAGTTTAAAACTGGCCTTTTTAATATGATTGAATTAAATATCATTTTGTAGATCTCGCTCAGTTCTACTGTTTAAGATATAAATCATACGGAAATTCCAGGTTTCAGCTGAGTTATGCGTCGGCGCACAGTGAGGACCGGGTGGGTGCCAACGAGATCGGCGCCCCTGGGTGCCGATTTTGCCTATCCGTTTTTCACCGTTTTAGAGTCAAAACTAGGTATTTTATTATGGTTGAATTATGTATCATTTTGTAGATTTCATTGAGTTCTATATTTTACAACTTAATTTTAACAGAAATTCCAAGTTTGAAACGAGGTAATAGTCGCGTTACAAGCCAATGAGTAGAAGTATTTAGTCGGATCAAACCATTCGGAGTCCCTACCACGATCCACCCGTCA</canonical>
            <polymorphic>TAGTTGAAAATGCACCACCCAGGTTCGCTACTGTGTAGCTCAGCAGACATTCAAAGTTTAAGTCAATTTATCTCGGTTCGTGCAAGAGTAGGAAAAGAAGACAAAAATTTTGGCAAAAATATGTTTTTAATGTAGTCAATTTTTTAGTGCAACTGAAATCTGCAAAAATTCTAAAGATCTCAAAGTCACTGGCCAATCGATCGTGCTGGCGCCGACCCAGCCTCCAGCCGCCGACGCATATCTCAGCTCAAACTTAGAATTTCTGCACAAAATAACAACCAAAAGAGTAGACTTTGGCAAGATCTACAAAATAATCTAAAATTCAACTATATTACAATGCCGTGTTTCAAATTAAAGATGATGAAAAGGGGTGTAAGTAAAATAGGTAGGCCTCGTTGGGGCTGATACTACGCGCCAACGCATAACTCAGCTCAAACTTAGAATATCTTCACAAATTAAAAATTATAAAATAGAACTGGAAAAGATCTATAAAATGATAKTAAATTCGACTATATTGAACTGCCAAGTCTTGACTCAGAGACGGTCGAAAGAAGTGTTAGCCTAACCGACACCCGGAGGCTCCAACCTCGTTTGCGGTCCTCTAGTTTAAAACTGGCCTTTTTAATATGATTGAATTAAATATCATTTTGTAGATCTCGCTCAGTTCTACTGTTTAAGATATAAATCATACGGAAATTCCAGGTTTCAGCTGAGTTATGCGTCGGCGCACAGTGAGGACCGGGTGGGTGCCAACGAGATCGGCGCCCCTGGGTGCCGATTTTGCCTATCCGTTTTTCACCGTTTTAGAGTCAAAACTAGGTATTTTATTATGGTTGAATTATGTATCATTTTGTAGATTTCATTGAGTTCTATATTTTACAACTTAATTTTAACAGAAATTCCAAGTTTGAAACGAGGTAATAGTCGCGTTACAAGCCAATGAGTAGAAGTATTTAGTCGGATCAAACCATTCGGAGTCCCTACCACGATCCACCCGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAAAGATCTCAAAGTCACTGG</pcr_primer_p1>
		<pcr_primer_p2>ACTTCTACTCATTGGCTTGTAAC</pcr_primer_p2>
		<pcr_amplicon_size>782</pcr_amplicon_size>
		<canonical_amplicon>TCTAAAGATCTCAAAGTCACTGGCCAATCGATCGTGCTGGCGCCGACCCAGCCTCCAGCCGCCGACGCATATCTCAGCTCAAACTTAGAATTTCTGCACAAAATAACAACCAAAAGAGTAGACTTTGGCAAGATCTACAAAATAATCTAAAATTCAACTATATTACAATGCCGTGTTTCAAATTAAAGATGATGAAAAGGGGTGTAAGTAAAATAGGTAGGCCTCGTTGGGGCTGATACTACGCGCCAACGCATAACTCAGCTCAAACTTAGAATATCTTCACAAATTAAAAATTATAAAATAGAACTGGAAAAGATCTATAAAATGATAGTAAATTCGACTATATTGAACTGCCAAGTCTTGACTCAGAGACGGTCGAAAGAAGTGTTAGCCTAACCGACACCCGGAGGCTCCAACCTCGTTTGCGGTCCTCTAGTTTAAAACTGGCCTTTTTAATATGATTGAATTAAATATCATTTTGTAGATCTCGCTCAGTTCTACTGTTTAAGATATAAATCATACGGAAATTCCAGGTTTCAGCTGAGTTATGCGTCGGCGCACAGTGAGGACCGGGTGGGTGCCAACGAGATCGGCGCCCCTGGGTGCCGATTTTGCCTATCCGTTTTTCACCGTTTTAGAGTCAAAACTAGGTATTTTATTATGGTTGAATTATGTATCATTTTGTAGATTTCATTGAGTTCTATATTTTACAACTTAATTTTAACAGAAATTCCAAGTTTGAAACGAGGTAATAGTCGCGTTACAAGCCAATGAGTAGAAGT</canonical_amplicon>
		<polymorphic_amplicon>TCTAAAGATCTCAAAGTCACTGGCCAATCGATCGTGCTGGCGCCGACCCAGCCTCCAGCCGCCGACGCATATCTCAGCTCAAACTTAGAATTTCTGCACAAAATAACAACCAAAAGAGTAGACTTTGGCAAGATCTACAAAATAATCTAAAATTCAACTATATTACAATGCCGTGTTTCAAATTAAAGATGATGAAAAGGGGTGTAAGTAAAATAGGTAGGCCTCGTTGGGGCTGATACTACGCGCCAACGCATAACTCAGCTCAAACTTAGAATATCTTCACAAATTAAAAATTATAAAATAGAACTGGAAAAGATCTATAAAATGATAKTAAATTCGACTATATTGAACTGCCAAGTCTTGACTCAGAGACGGTCGAAAGAAGTGTTAGCCTAACCGACACCCGGAGGCTCCAACCTCGTTTGCGGTCCTCTAGTTTAAAACTGGCCTTTTTAATATGATTGAATTAAATATCATTTTGTAGATCTCGCTCAGTTCTACTGTTTAAGATATAAATCATACGGAAATTCCAGGTTTCAGCTGAGTTATGCGTCGGCGCACAGTGAGGACCGGGTGGGTGCCAACGAGATCGGCGCCCCTGGGTGCCGATTTTGCCTATCCGTTTTTCACCGTTTTAGAGTCAAAACTAGGTATTTTATTATGGTTGAATTATGTATCATTTTGTAGATTTCATTGAGTTCTATATTTTACAACTTAATTTTAACAGAAATTCCAAGTTTGAAACGAGGTAATAGTCGCGTTACAAGCCAATGAGTAGAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39123</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>248726</contig_pos>
        <strand></strand>
        <context>aaagaagtgt[T/A]agcctaaccg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GACTATATTGAACTGCCAAGTCTTGACTCAGAGACGGTCGAAAGAAGTGT</left_flank>
        <right_flank>AGCCTAACCGACACCCGGAGGCTCCAACCTCGTTTGCGGTCCTCTAGTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGTCAATTTATCTCGGTTCGTGCAAGAGTAGGAAAAGAAGACAAAAATTTTGGCAAAAATATGTTTTTAATGTAGTCAATTTTTTAGTGCAACTGAAATCTGCAAAAATTCTAAAGATCTCAAAGTCACTGGCCAATCGATCGTGCTGGCGCCGACCCAGCCTCCAGCCGCCGACGCATATCTCAGCTCAAACTTAGAATTTCTGCACAAAATAACAACCAAAAGAGTAGACTTTGGCAAGATCTACAAAATAATCTAAAATTCAACTATATTACAATGCCGTGTTTCAAATTAAAGATGATGAAAAGGGGTGTAAGTAAAATAGGTAGGCCTCGTTGGGGCTGATACTACGCGCCAACGCATAACTCAGCTCAAACTTAGAATATCTTCACAAATTAAAAATTATAAAATAGAACTGGAAAAGATCTATAAAATGATAGTAAATTCGACTATATTGAACTGCCAAGTCTTGACTCAGAGACGGTCGAAAGAAGTGTTAGCCTAACCGACACCCGGAGGCTCCAACCTCGTTTGCGGTCCTCTAGTTTAAAACTGGCCTTTTTAATATGATTGAATTAAATATCATTTTGTAGATCTCGCTCAGTTCTACTGTTTAAGATATAAATCATACGGAAATTCCAGGTTTCAGCTGAGTTATGCGTCGGCGCACAGTGAGGACCGGGTGGGTGCCAACGAGATCGGCGCCCCTGGGTGCCGATTTTGCCTATCCGTTTTTCACCGTTTTAGAGTCAAAACTAGGTATTTTATTATGGTTGAATTATGTATCATTTTGTAGATTTCATTGAGTTCTATATTTTACAACTTAATTTTAACAGAAATTCCAAGTTTGAAACGAGGTAATAGTCGCGTTACAAGCCAATGAGTAGAAGTATTTAGTCGGATCAAACCATTCGGAGTCCCTACCACGATCCACCCGTCACCAGGACATAATCCAAAGGATAATATAACACAAATCCCTTCTTCACCCCCTATCACAT</canonical>
            <polymorphic>TAAGTCAATTTATCTCGGTTCGTGCAAGAGTAGGAAAAGAAGACAAAAATTTTGGCAAAAATATGTTTTTAATGTAGTCAATTTTTTAGTGCAACTGAAATCTGCAAAAATTCTAAAGATCTCAAAGTCACTGGCCAATCGATCGTGCTGGCGCCGACCCAGCCTCCAGCCGCCGACGCATATCTCAGCTCAAACTTAGAATTTCTGCACAAAATAACAACCAAAAGAGTAGACTTTGGCAAGATCTACAAAATAATCTAAAATTCAACTATATTACAATGCCGTGTTTCAAATTAAAGATGATGAAAAGGGGTGTAAGTAAAATAGGTAGGCCTCGTTGGGGCTGATACTACGCGCCAACGCATAACTCAGCTCAAACTTAGAATATCTTCACAAATTAAAAATTATAAAATAGAACTGGAAAAGATCTATAAAATGATAGTAAATTCGACTATATTGAACTGCCAAGTCTTGACTCAGAGACGGTCGAAAGAAGTGTWAGCCTAACCGACACCCGGAGGCTCCAACCTCGTTTGCGGTCCTCTAGTTTAAAACTGGCCTTTTTAATATGATTGAATTAAATATCATTTTGTAGATCTCGCTCAGTTCTACTGTTTAAGATATAAATCATACGGAAATTCCAGGTTTCAGCTGAGTTATGCGTCGGCGCACAGTGAGGACCGGGTGGGTGCCAACGAGATCGGCGCCCCTGGGTGCCGATTTTGCCTATCCGTTTTTCACCGTTTTAGAGTCAAAACTAGGTATTTTATTATGGTTGAATTATGTATCATTTTGTAGATTTCATTGAGTTCTATATTTTACAACTTAATTTTAACAGAAATTCCAAGTTTGAAACGAGGTAATAGTCGCGTTACAAGCCAATGAGTAGAAGTATTTAGTCGGATCAAACCATTCGGAGTCCCTACCACGATCCACCCGTCACCAGGACATAATCCAAAGGATAATATAACACAAATCCCTTCTTCACCCCCTATCACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTAAAGATCTCAAAGTCACTGG</pcr_primer_p1>
		<pcr_primer_p2>ACTTCTACTCATTGGCTTGTAAC</pcr_primer_p2>
		<pcr_amplicon_size>782</pcr_amplicon_size>
		<canonical_amplicon>TCTAAAGATCTCAAAGTCACTGGCCAATCGATCGTGCTGGCGCCGACCCAGCCTCCAGCCGCCGACGCATATCTCAGCTCAAACTTAGAATTTCTGCACAAAATAACAACCAAAAGAGTAGACTTTGGCAAGATCTACAAAATAATCTAAAATTCAACTATATTACAATGCCGTGTTTCAAATTAAAGATGATGAAAAGGGGTGTAAGTAAAATAGGTAGGCCTCGTTGGGGCTGATACTACGCGCCAACGCATAACTCAGCTCAAACTTAGAATATCTTCACAAATTAAAAATTATAAAATAGAACTGGAAAAGATCTATAAAATGATAGTAAATTCGACTATATTGAACTGCCAAGTCTTGACTCAGAGACGGTCGAAAGAAGTGTTAGCCTAACCGACACCCGGAGGCTCCAACCTCGTTTGCGGTCCTCTAGTTTAAAACTGGCCTTTTTAATATGATTGAATTAAATATCATTTTGTAGATCTCGCTCAGTTCTACTGTTTAAGATATAAATCATACGGAAATTCCAGGTTTCAGCTGAGTTATGCGTCGGCGCACAGTGAGGACCGGGTGGGTGCCAACGAGATCGGCGCCCCTGGGTGCCGATTTTGCCTATCCGTTTTTCACCGTTTTAGAGTCAAAACTAGGTATTTTATTATGGTTGAATTATGTATCATTTTGTAGATTTCATTGAGTTCTATATTTTACAACTTAATTTTAACAGAAATTCCAAGTTTGAAACGAGGTAATAGTCGCGTTACAAGCCAATGAGTAGAAGT</canonical_amplicon>
		<polymorphic_amplicon>TCTAAAGATCTCAAAGTCACTGGCCAATCGATCGTGCTGGCGCCGACCCAGCCTCCAGCCGCCGACGCATATCTCAGCTCAAACTTAGAATTTCTGCACAAAATAACAACCAAAAGAGTAGACTTTGGCAAGATCTACAAAATAATCTAAAATTCAACTATATTACAATGCCGTGTTTCAAATTAAAGATGATGAAAAGGGGTGTAAGTAAAATAGGTAGGCCTCGTTGGGGCTGATACTACGCGCCAACGCATAACTCAGCTCAAACTTAGAATATCTTCACAAATTAAAAATTATAAAATAGAACTGGAAAAGATCTATAAAATGATAGTAAATTCGACTATATTGAACTGCCAAGTCTTGACTCAGAGACGGTCGAAAGAAGTGTWAGCCTAACCGACACCCGGAGGCTCCAACCTCGTTTGCGGTCCTCTAGTTTAAAACTGGCCTTTTTAATATGATTGAATTAAATATCATTTTGTAGATCTCGCTCAGTTCTACTGTTTAAGATATAAATCATACGGAAATTCCAGGTTTCAGCTGAGTTATGCGTCGGCGCACAGTGAGGACCGGGTGGGTGCCAACGAGATCGGCGCCCCTGGGTGCCGATTTTGCCTATCCGTTTTTCACCGTTTTAGAGTCAAAACTAGGTATTTTATTATGGTTGAATTATGTATCATTTTGTAGATTTCATTGAGTTCTATATTTTACAACTTAATTTTAACAGAAATTCCAAGTTTGAAACGAGGTAATAGTCGCGTTACAAGCCAATGAGTAGAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39124</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>248937</contig_pos>
        <strand></strand>
        <context>tcggcgcccc[T/C]gggtgccgat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCGTCGGCGCACAGTGAGGACCGGGTGGGTGCCAACGAGATCGGCGCCCC</left_flank>
        <right_flank>GGGTGCCGATTTTGCCTATCCGTTTTTCACCGTTTTAGAGTCAAAACTAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATAACAACCAAAAGAGTAGACTTTGGCAAGATCTACAAAATAATCTAAAATTCAACTATATTACAATGCCGTGTTTCAAATTAAAGATGATGAAAAGGGGTGTAAGTAAAATAGGTAGGCCTCGTTGGGGCTGATACTACGCGCCAACGCATAACTCAGCTCAAACTTAGAATATCTTCACAAATTAAAAATTATAAAATAGAACTGGAAAAGATCTATAAAATGATAGTAAATTCGACTATATTGAACTGCCAAGTCTTGACTCAGAGACGGTCGAAAGAAGTGTTAGCCTAACCGACACCCGGAGGCTCCAACCTCGTTTGCGGTCCTCTAGTTTAAAACTGGCCTTTTTAATATGATTGAATTAAATATCATTTTGTAGATCTCGCTCAGTTCTACTGTTTAAGATATAAATCATACGGAAATTCCAGGTTTCAGCTGAGTTATGCGTCGGCGCACAGTGAGGACCGGGTGGGTGCCAACGAGATCGGCGCCCCTGGGTGCCGATTTTGCCTATCCGTTTTTCACCGTTTTAGAGTCAAAACTAGGTATTTTATTATGGTTGAATTATGTATCATTTTGTAGATTTCATTGAGTTCTATATTTTACAACTTAATTTTAACAGAAATTCCAAGTTTGAAACGAGGTAATAGTCGCGTTACAAGCCAATGAGTAGAAGTATTTAGTCGGATCAAACCATTCGGAGTCCCTACCACGATCCACCCGTCACCAGGACATAATCCAAAGGATAATATAACACAAATCCCTTCTTCACCCCCTATCACATCTTCGATCAATGTTTACACCACTCCTCGTGTGGTCCATCTGACCTCTTTTCGTGTGTGTTCCCCGCAAAAAAGCAATTAGTCTCTGTACGCGGCTTCTCTTTCCACACTGACCGATATCAACTGTAAAACAATTAATATAGTTGGGTCTAGACAAGAGACTAATGAGAGCTTTAATCTTTTGCCGAGAGAAGAAATGGAAAATGCTCTCTG</canonical>
            <polymorphic>AAATAACAACCAAAAGAGTAGACTTTGGCAAGATCTACAAAATAATCTAAAATTCAACTATATTACAATGCCGTGTTTCAAATTAAAGATGATGAAAAGGGGTGTAAGTAAAATAGGTAGGCCTCGTTGGGGCTGATACTACGCGCCAACGCATAACTCAGCTCAAACTTAGAATATCTTCACAAATTAAAAATTATAAAATAGAACTGGAAAAGATCTATAAAATGATAGTAAATTCGACTATATTGAACTGCCAAGTCTTGACTCAGAGACGGTCGAAAGAAGTGTTAGCCTAACCGACACCCGGAGGCTCCAACCTCGTTTGCGGTCCTCTAGTTTAAAACTGGCCTTTTTAATATGATTGAATTAAATATCATTTTGTAGATCTCGCTCAGTTCTACTGTTTAAGATATAAATCATACGGAAATTCCAGGTTTCAGCTGAGTTATGCGTCGGCGCACAGTGAGGACCGGGTGGGTGCCAACGAGATCGGCGCCCCYGGGTGCCGATTTTGCCTATCCGTTTTTCACCGTTTTAGAGTCAAAACTAGGTATTTTATTATGGTTGAATTATGTATCATTTTGTAGATTTCATTGAGTTCTATATTTTACAACTTAATTTTAACAGAAATTCCAAGTTTGAAACGAGGTAATAGTCGCGTTACAAGCCAATGAGTAGAAGTATTTAGTCGGATCAAACCATTCGGAGTCCCTACCACGATCCACCCGTCACCAGGACATAATCCAAAGGATAATATAACACAAATCCCTTCTTCACCCCCTATCACATCTTCGATCAATGTTTACACCACTCCTCGTGTGGTCCATCTGACCTCTTTTCGTGTGTGTTCCCCGCAAAAAAGCAATTAGTCTCTGTACGCGGCTTCTCTTTCCACACTGACCGATATCAACTGTAAAACAATTAATATAGTTGGGTCTAGACAAGAGACTAATGAGAGCTTTAATCTTTTGCCGAGAGAAGAAATGGAAAATGCTCTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>431 267 234 68</canonical_bands>
                <polymorphic_bands>431 302 267</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTAAAGATCTCAAAGTCACTGG</pcr_primer_p1>
		<pcr_primer_p2>ACTTCTACTCATTGGCTTGTAAC</pcr_primer_p2>
		<pcr_amplicon_size>782</pcr_amplicon_size>
		<canonical_amplicon>CTGGGTGCCGATTTTGCCTATCCGTTTTTCACCGTTTTAGAGTCAAAACTAGGTATTTTATTATGGTTGAATTATGTATCATTTTGTAGATTTCATTGAGTTCTATATTTTACAACTTAATTTTAACAGAAATTCCAAGTTTGAAACGAGGTAATAGTCGCGTTACAAGCCAATGAGTAGAAGT</canonical_amplicon>
		<polymorphic_amplicon>CYGGGTGCCGATTTTGCCTATCCGTTTTTCACCGTTTTAGAGTCAAAACTAGGTATTTTATTATGGTTGAATTATGTATCATTTTGTAGATTTCATTGAGTTCTATATTTTACAACTTAATTTTAACAGAAATTCCAAGTTTGAAACGAGGTAATAGTCGCGTTACAAGCCAATGAGTAGAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39125</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>251052</contig_pos>
        <strand>+</strand>
        <context>GATACTTTTT[G/T]GAGCAAATAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAAGTTGGCACCCATAATTCAAATTTTTGGACATTTGGGATACTTTTT</left_flank>
        <right_flank>GAGCAAATACCGGAGTGTGACAAGGGGAGCAAAAAATGAAAGATATGAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCGGAGGCTACAAAAATTTTGTGGTCACATGGGTATGAACCAAATTAGGGGTACGAAGTTTATGAAAAGTTCGAAATTTATACCCCTAATTAAGGATTTTGTACTCCTAAATTGATTTGTACCCCACTGACCTCAAATTACTTGTATCCTCGGAATTATTTGCCAAAAACAAGGCGTAATTCAGAAACTTTTCGAATATTAACTACAGTACTTTATGGATGATAAAAGGATGCTTCAGAAAGTTTGGAAAAATCGAAATTCTGGAATCTTCTGGATAATCAAAATTCCATACGAACTAAACTCCTCCTTCTCCCGAGTTATTCTTCCGAGAGCCCAAGTAAATGCAAACACAAAAACTTGTCAATTGTACTCCTCTTTTTTGACACCTTGCAGATTTATGGACGCACCGAGCCTACTCTCGAGAGTTTTTACACACTTTTTGGTGTCAAAAAGTTGGCACCCATAATTCAAATTTTTGGACATTTGGGATACTTTTTGGAGCAAATACCGGAGTGTGACAAGGGGAGCAAAAAATGAAAGATATGAGAAATAAGGGAGGCTTTGGAGAAGCCCAAAATTTCGAAAATCCAGAAAATTCTGTAAGTCAAGAGGAATTTCAAAAGTATCTAGAGATTCAGATTCCTAAGAATCTCTAGAAACTAGAATATCTAGAAGTTTCTGAAATCCCTCTAGACATCTTTGCAGGCAATCGTTAATAAGAAATTCACTTAATAAGAAATTCCATTAATAAGGATCGGAAACCAAATCACACCTGACAGAATATTATGAAAAATGAAAGCTAGCAATTTCTTATCACTATGATTTCTCTAACACCCAAACTGTTCAACCGTTCTCTTCTCTCTGCCCCTCTCTATCCCTCCAACTACCGTAATCCCTTGCATCTCCACCCCCTGGTGGTAGTTGAGTGTCAGTTGTGTTGTCTTCTTCTTCTTCGTGAAAATTGATCGCTGTCTTCCTCTTCGTACATCCTTCGTCGT</canonical>
            <polymorphic>GCTCGGAGGCTACAAAAATTTTGTGGTCACATGGGTATGAACCAAATTAGGGGTACGAAGTTTATGAAAAGTTCGAAATTTATACCCCTAATTAAGGATTTTGTACTCCTAAATTGATTTGTACCCCACTGACCTCAAATTACTTGTATCCTCGGAATTATTTGCCAAAAACAAGGCGTAATTCAGAAACTTTTCGAATATTAACTACAGTACTTTATGGATGATAAAAGGATGCTTCAGAAAGTTTGGAAAAATCGAAATTCTGGAATCTTCTGGATAATCAAAATTCCATACGAACTAAACTCCTCCTTCTCCCGAGTTATTCTTCCGAGAGCCCAAGTAAATGCAAACACAAAAACTTGTCAATTGTACTCCTCTTTTTTGACACCTTGCAGATTTATGGACGCACCGAGCCTACTCTCGAGAGTTTTTACACACTTTTTGGTGTCAAAAAGTTGGCACCCATAATTCAAATTTTTGGACATTTGGGATACTTTTTKGAGCAAATACCGGAGTGTGACAAGGGGAGCAAAAAATGAAAGATATGAGAAATAAGGGAGGCTTTGGAGAAGCCCAAAATTTCGAAAATCCAGAAAATTCTGTAAGTCAAGAGGAATTTCAAAAGTATCTAGAGATTCAGATTCCTAAGAATCTCTAGAAACTAGAATATCTAGAAGTTTCTGAAATCCCTCTAGACATCTTTGCAGGCAATCGTTAATAAGAAATTCACTTAATAAGAAATTCCATTAATAAGGATCGGAAACCAAATCACACCTGACAGAATATTATGAAAAATGAAAGCTAGCAATTTCTTATCACTATGATTTCTCTAACACCCAAACTGTTCAACCGTTCTCTTCTCTCTGCCCCTCTCTATCCCTCCAACTACCGTAATCCCTTGCATCTCCACCCCCTGGTGGTAGTTGAGTGTCAGTTGTGTTGTCTTCTTCTTCTTCGTGAAAATTGATCGCTGTCTTCCTCTTCGTACATCCTTCGTCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTCAATTGTACTCCTCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTTACAGAATTTTCTGGATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTGTCAATTGTACTCCTCTTTTTTGACACCTTGCAGATTTATGGACGCACCGAGCCTACTCTCGAGAGTTTTTACACACTTTTTGGTGTCAAAAAGTTGGCACCCATAATTCAAATTTTTGGACATTTGGGATACTTTTTGGAGCAAATACCGGAGTGTGACAAGGGGAGCAAAAAATGAAAGATATGAGAAATAAGGGAGGCTTTGGAGAAGCCCAAAATTTCGAAAATCCAGAAAATTCTGTAAGT</canonical_amplicon>
		<polymorphic_amplicon>TTGTCAATTGTACTCCTCTTTTTTGACACCTTGCAGATTTATGGACGCACCGAGCCTACTCTCGAGAGTTTTTACACACTTTTTGGTGTCAAAAAGTTGGCACCCATAATTCAAATTTTTGGACATTTGGGATACTTTTTKGAGCAAATACCGGAGTGTGACAAGGGGAGCAAAAAATGAAAGATATGAGAAATAAGGGAGGCTTTGGAGAAGCCCAAAATTTCGAAAATCCAGAAAATTCTGTAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39126</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>251093</contig_pos>
        <strand>+</strand>
        <context>AAAAAATGAA[A/G]GATATGAGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATACTTTTTGGAGCAAATACCGGAGTGTGACAAGGGGAGCAAAAAATGAA</left_flank>
        <right_flank>GATATGAGAAATAAGGGAGGCTTTGGAGAAGCCCAAAATTTCGAAAATCC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAATTAGGGGTACGAAGTTTATGAAAAGTTCGAAATTTATACCCCTAATTAAGGATTTTGTACTCCTAAATTGATTTGTACCCCACTGACCTCAAATTACTTGTATCCTCGGAATTATTTGCCAAAAACAAGGCGTAATTCAGAAACTTTTCGAATATTAACTACAGTACTTTATGGATGATAAAAGGATGCTTCAGAAAGTTTGGAAAAATCGAAATTCTGGAATCTTCTGGATAATCAAAATTCCATACGAACTAAACTCCTCCTTCTCCCGAGTTATTCTTCCGAGAGCCCAAGTAAATGCAAACACAAAAACTTGTCAATTGTACTCCTCTTTTTTGACACCTTGCAGATTTATGGACGCACCGAGCCTACTCTCGAGAGTTTTTACACACTTTTTGGTGTCAAAAAGTTGGCACCCATAATTCAAATTTTTGGACATTTGGGATACTTTTTGGAGCAAATACCGGAGTGTGACAAGGGGAGCAAAAAATGAAAGATATGAGAAATAAGGGAGGCTTTGGAGAAGCCCAAAATTTCGAAAATCCAGAAAATTCTGTAAGTCAAGAGGAATTTCAAAAGTATCTAGAGATTCAGATTCCTAAGAATCTCTAGAAACTAGAATATCTAGAAGTTTCTGAAATCCCTCTAGACATCTTTGCAGGCAATCGTTAATAAGAAATTCACTTAATAAGAAATTCCATTAATAAGGATCGGAAACCAAATCACACCTGACAGAATATTATGAAAAATGAAAGCTAGCAATTTCTTATCACTATGATTTCTCTAACACCCAAACTGTTCAACCGTTCTCTTCTCTCTGCCCCTCTCTATCCCTCCAACTACCGTAATCCCTTGCATCTCCACCCCCTGGTGGTAGTTGAGTGTCAGTTGTGTTGTCTTCTTCTTCTTCGTGAAAATTGATCGCTGTCTTCCTCTTCGTACATCCTTCGTCGTCTCAGATGCTGCTGCTGCTGGTGGAAAACGTTGCGTTGTTT</canonical>
            <polymorphic>CCAAATTAGGGGTACGAAGTTTATGAAAAGTTCGAAATTTATACCCCTAATTAAGGATTTTGTACTCCTAAATTGATTTGTACCCCACTGACCTCAAATTACTTGTATCCTCGGAATTATTTGCCAAAAACAAGGCGTAATTCAGAAACTTTTCGAATATTAACTACAGTACTTTATGGATGATAAAAGGATGCTTCAGAAAGTTTGGAAAAATCGAAATTCTGGAATCTTCTGGATAATCAAAATTCCATACGAACTAAACTCCTCCTTCTCCCGAGTTATTCTTCCGAGAGCCCAAGTAAATGCAAACACAAAAACTTGTCAATTGTACTCCTCTTTTTTGACACCTTGCAGATTTATGGACGCACCGAGCCTACTCTCGAGAGTTTTTACACACTTTTTGGTGTCAAAAAGTTGGCACCCATAATTCAAATTTTTGGACATTTGGGATACTTTTTGGAGCAAATACCGGAGTGTGACAAGGGGAGCAAAAAATGAARGATATGAGAAATAAGGGAGGCTTTGGAGAAGCCCAAAATTTCGAAAATCCAGAAAATTCTGTAAGTCAAGAGGAATTTCAAAAGTATCTAGAGATTCAGATTCCTAAGAATCTCTAGAAACTAGAATATCTAGAAGTTTCTGAAATCCCTCTAGACATCTTTGCAGGCAATCGTTAATAAGAAATTCACTTAATAAGAAATTCCATTAATAAGGATCGGAAACCAAATCACACCTGACAGAATATTATGAAAAATGAAAGCTAGCAATTTCTTATCACTATGATTTCTCTAACACCCAAACTGTTCAACCGTTCTCTTCTCTCTGCCCCTCTCTATCCCTCCAACTACCGTAATCCCTTGCATCTCCACCCCCTGGTGGTAGTTGAGTGTCAGTTGTGTTGTCTTCTTCTTCTTCGTGAAAATTGATCGCTGTCTTCCTCTTCGTACATCCTTCGTCGTCTCAGATGCTGCTGCTGCTGGTGGAAAACGTTGCGTTGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGTCAATTGTACTCCTCTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ACTTACAGAATTTTCTGGATTTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTGTCAATTGTACTCCTCTTTTTTGACACCTTGCAGATTTATGGACGCACCGAGCCTACTCTCGAGAGTTTTTACACACTTTTTGGTGTCAAAAAGTTGGCACCCATAATTCAAATTTTTGGACATTTGGGATACTTTTTGGAGCAAATACCGGAGTGTGACAAGGGGAGCAAAAAATGAAAGATATGAGAAATAAGGGAGGCTTTGGAGAAGCCCAAAATTTCGAAAATCCAGAAAATTCTGTAAGT</canonical_amplicon>
		<polymorphic_amplicon>TTGTCAATTGTACTCCTCTTTTTTGACACCTTGCAGATTTATGGACGCACCGAGCCTACTCTCGAGAGTTTTTACACACTTTTTGGTGTCAAAAAGTTGGCACCCATAATTCAAATTTTTGGACATTTGGGATACTTTTTGGAGCAAATACCGGAGTGTGACAAGGGGAGCAAAAAATGAARGATATGAGAAATAAGGGAGGCTTTGGAGAAGCCCAAAATTTCGAAAATCCAGAAAATTCTGTAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39127</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>251114</contig_pos>
        <strand>+</strand>
        <context>ATAAGGGAGG[C/T]TTTGGAGAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGAGTGTGACAAGGGGAGCAAAAAATGAAAGATATGAGAAATAAGGGAGG</left_flank>
        <right_flank>TTTGGAGAAGCCCAAAATTTCGAAAATCCAGAAAATTCTGTAAGTCAAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGAAAAGTTCGAAATTTATACCCCTAATTAAGGATTTTGTACTCCTAAATTGATTTGTACCCCACTGACCTCAAATTACTTGTATCCTCGGAATTATTTGCCAAAAACAAGGCGTAATTCAGAAACTTTTCGAATATTAACTACAGTACTTTATGGATGATAAAAGGATGCTTCAGAAAGTTTGGAAAAATCGAAATTCTGGAATCTTCTGGATAATCAAAATTCCATACGAACTAAACTCCTCCTTCTCCCGAGTTATTCTTCCGAGAGCCCAAGTAAATGCAAACACAAAAACTTGTCAATTGTACTCCTCTTTTTTGACACCTTGCAGATTTATGGACGCACCGAGCCTACTCTCGAGAGTTTTTACACACTTTTTGGTGTCAAAAAGTTGGCACCCATAATTCAAATTTTTGGACATTTGGGATACTTTTTGGAGCAAATACCGGAGTGTGACAAGGGGAGCAAAAAATGAAAGATATGAGAAATAAGGGAGGCTTTGGAGAAGCCCAAAATTTCGAAAATCCAGAAAATTCTGTAAGTCAAGAGGAATTTCAAAAGTATCTAGAGATTCAGATTCCTAAGAATCTCTAGAAACTAGAATATCTAGAAGTTTCTGAAATCCCTCTAGACATCTTTGCAGGCAATCGTTAATAAGAAATTCACTTAATAAGAAATTCCATTAATAAGGATCGGAAACCAAATCACACCTGACAGAATATTATGAAAAATGAAAGCTAGCAATTTCTTATCACTATGATTTCTCTAACACCCAAACTGTTCAACCGTTCTCTTCTCTCTGCCCCTCTCTATCCCTCCAACTACCGTAATCCCTTGCATCTCCACCCCCTGGTGGTAGTTGAGTGTCAGTTGTGTTGTCTTCTTCTTCTTCGTGAAAATTGATCGCTGTCTTCCTCTTCGTACATCCTTCGTCGTCTCAGATGCTGCTGCTGCTGGTGGAAAACGTTGCGTTGTTTGGTATTTTTGAGTGTAGAGCG</canonical>
            <polymorphic>TATGAAAAGTTCGAAATTTATACCCCTAATTAAGGATTTTGTACTCCTAAATTGATTTGTACCCCACTGACCTCAAATTACTTGTATCCTCGGAATTATTTGCCAAAAACAAGGCGTAATTCAGAAACTTTTCGAATATTAACTACAGTACTTTATGGATGATAAAAGGATGCTTCAGAAAGTTTGGAAAAATCGAAATTCTGGAATCTTCTGGATAATCAAAATTCCATACGAACTAAACTCCTCCTTCTCCCGAGTTATTCTTCCGAGAGCCCAAGTAAATGCAAACACAAAAACTTGTCAATTGTACTCCTCTTTTTTGACACCTTGCAGATTTATGGACGCACCGAGCCTACTCTCGAGAGTTTTTACACACTTTTTGGTGTCAAAAAGTTGGCACCCATAATTCAAATTTTTGGACATTTGGGATACTTTTTGGAGCAAATACCGGAGTGTGACAAGGGGAGCAAAAAATGAAAGATATGAGAAATAAGGGAGGYTTTGGAGAAGCCCAAAATTTCGAAAATCCAGAAAATTCTGTAAGTCAAGAGGAATTTCAAAAGTATCTAGAGATTCAGATTCCTAAGAATCTCTAGAAACTAGAATATCTAGAAGTTTCTGAAATCCCTCTAGACATCTTTGCAGGCAATCGTTAATAAGAAATTCACTTAATAAGAAATTCCATTAATAAGGATCGGAAACCAAATCACACCTGACAGAATATTATGAAAAATGAAAGCTAGCAATTTCTTATCACTATGATTTCTCTAACACCCAAACTGTTCAACCGTTCTCTTCTCTCTGCCCCTCTCTATCCCTCCAACTACCGTAATCCCTTGCATCTCCACCCCCTGGTGGTAGTTGAGTGTCAGTTGTGTTGTCTTCTTCTTCTTCGTGAAAATTGATCGCTGTCTTCCTCTTCGTACATCCTTCGTCGTCTCAGATGCTGCTGCTGCTGGTGGAAAACGTTGCGTTGTTTGGTATTTTTGAGTGTAGAGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>272 261 229 148 79 11</canonical_bands>
                <polymorphic_bands>272 261 229 159 79</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTGACACCTTGCAGATTTAT</pcr_primer_p1>
		<pcr_primer_p2>TGAAATTCCTCTTGACTTACAGA</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTTGACACCTTGCAGATTTATGGACGCACCGAGCCTACTCTCGAGAGTTTTTACACACTTTTTGGTGTCAAAAAGTTGGCACCCATAATTCAAATTTTTGGACATTTGGGATACTTTTTGGAGCAAATACCGGAGTGTGACAAGGGGAGCAAAAAATGAAAGATATGAGAAATAAGGGAGGCTTTGGAGAAGCCCAAAATTTCGAAAATCCAGAAAATTCTGTAAGTCAAGAGGAATTTCA</canonical_amplicon>
		<polymorphic_amplicon>TTTGACACCTTGCAGATTTATGGACGCACCGAGCCTACTCTCGAGAGTTTTTACACACTTTTTGGTGTCAAAAAGTTGGCACCCATAATTCAAATTTTTGGACATTTGGGATACTTTTTGGAGCAAATACCGGAGTGTGACAAGGGGAGCAAAAAATGAAAGATATGAGAAATAAGGGAGGYTTTGGAGAAGCCCAAAATTTCGAAAATCCAGAAAATTCTGTAAGTCAAGAGGAATTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39128</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>251174</contig_pos>
        <strand>+</strand>
        <context>AGGAATTTCA[A/G]AAGTATCTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCCAAAATTTCGAAAATCCAGAAAATTCTGTAAGTCAAGAGGAATTTCA</left_flank>
        <right_flank>AAGTATCTAGAGATTCAGATTCCTAAGAATCTCTAGAAACTAGAATATCT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCCCACTGACCTCAAATTACTTGTATCCTCGGAATTATTTGCCAAAAACAAGGCGTAATTCAGAAACTTTTCGAATATTAACTACAGTACTTTATGGATGATAAAAGGATGCTTCAGAAAGTTTGGAAAAATCGAAATTCTGGAATCTTCTGGATAATCAAAATTCCATACGAACTAAACTCCTCCTTCTCCCGAGTTATTCTTCCGAGAGCCCAAGTAAATGCAAACACAAAAACTTGTCAATTGTACTCCTCTTTTTTGACACCTTGCAGATTTATGGACGCACCGAGCCTACTCTCGAGAGTTTTTACACACTTTTTGGTGTCAAAAAGTTGGCACCCATAATTCAAATTTTTGGACATTTGGGATACTTTTTGGAGCAAATACCGGAGTGTGACAAGGGGAGCAAAAAATGAAAGATATGAGAAATAAGGGAGGCTTTGGAGAAGCCCAAAATTTCGAAAATCCAGAAAATTCTGTAAGTCAAGAGGAATTTCAAAAGTATCTAGAGATTCAGATTCCTAAGAATCTCTAGAAACTAGAATATCTAGAAGTTTCTGAAATCCCTCTAGACATCTTTGCAGGCAATCGTTAATAAGAAATTCACTTAATAAGAAATTCCATTAATAAGGATCGGAAACCAAATCACACCTGACAGAATATTATGAAAAATGAAAGCTAGCAATTTCTTATCACTATGATTTCTCTAACACCCAAACTGTTCAACCGTTCTCTTCTCTCTGCCCCTCTCTATCCCTCCAACTACCGTAATCCCTTGCATCTCCACCCCCTGGTGGTAGTTGAGTGTCAGTTGTGTTGTCTTCTTCTTCTTCGTGAAAATTGATCGCTGTCTTCCTCTTCGTACATCCTTCGTCGTCTCAGATGCTGCTGCTGCTGGTGGAAAACGTTGCGTTGTTTGGTATTTTTGAGTGTAGAGCGAGTCATCGGTGGTTGTCGCATGATGACGAAGAGATGTCTCCCAAGGAGGATTCTTGGAAA</canonical>
            <polymorphic>ACCCCACTGACCTCAAATTACTTGTATCCTCGGAATTATTTGCCAAAAACAAGGCGTAATTCAGAAACTTTTCGAATATTAACTACAGTACTTTATGGATGATAAAAGGATGCTTCAGAAAGTTTGGAAAAATCGAAATTCTGGAATCTTCTGGATAATCAAAATTCCATACGAACTAAACTCCTCCTTCTCCCGAGTTATTCTTCCGAGAGCCCAAGTAAATGCAAACACAAAAACTTGTCAATTGTACTCCTCTTTTTTGACACCTTGCAGATTTATGGACGCACCGAGCCTACTCTCGAGAGTTTTTACACACTTTTTGGTGTCAAAAAGTTGGCACCCATAATTCAAATTTTTGGACATTTGGGATACTTTTTGGAGCAAATACCGGAGTGTGACAAGGGGAGCAAAAAATGAAAGATATGAGAAATAAGGGAGGCTTTGGAGAAGCCCAAAATTTCGAAAATCCAGAAAATTCTGTAAGTCAAGAGGAATTTCARAAGTATCTAGAGATTCAGATTCCTAAGAATCTCTAGAAACTAGAATATCTAGAAGTTTCTGAAATCCCTCTAGACATCTTTGCAGGCAATCGTTAATAAGAAATTCACTTAATAAGAAATTCCATTAATAAGGATCGGAAACCAAATCACACCTGACAGAATATTATGAAAAATGAAAGCTAGCAATTTCTTATCACTATGATTTCTCTAACACCCAAACTGTTCAACCGTTCTCTTCTCTCTGCCCCTCTCTATCCCTCCAACTACCGTAATCCCTTGCATCTCCACCCCCTGGTGGTAGTTGAGTGTCAGTTGTGTTGTCTTCTTCTTCTTCGTGAAAATTGATCGCTGTCTTCCTCTTCGTACATCCTTCGTCGTCTCAGATGCTGCTGCTGCTGGTGGAAAACGTTGCGTTGTTTGGTATTTTTGAGTGTAGAGCGAGTCATCGGTGGTTGTCGCATGATGACGAAGAGATGTCTCCCAAGGAGGATTCTTGGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAAGTTGGCACCCATAAT</pcr_primer_p1>
		<pcr_primer_p2>AAGATGTCTAGAGGGATTTCAGA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>AAAAAGTTGGCACCCATAATTCAAATTTTTGGACATTTGGGATACTTTTTGGAGCAAATACCGGAGTGTGACAAGGGGAGCAAAAAATGAAAGATATGAGAAATAAGGGAGGCTTTGGAGAAGCCCAAAATTTCGAAAATCCAGAAAATTCTGTAAGTCAAGAGGAATTTCAAAAGTATCTAGAGATTCAGATTCCTAAGAATCTCTAGAAACTAGAATATCTAGAAGTTTCTGAAATCCCTCTAGACATCTT</canonical_amplicon>
		<polymorphic_amplicon>AAAAAGTTGGCACCCATAATTCAAATTTTTGGACATTTGGGATACTTTTTGGAGCAAATACCGGAGTGTGACAAGGGGAGCAAAAAATGAAAGATATGAGAAATAAGGGAGGCTTTGGAGAAGCCCAAAATTTCGAAAATCCAGAAAATTCTGTAAGTCAAGAGGAATTTCARAAGTATCTAGAGATTCAGATTCCTAAGAATCTCTAGAAACTAGAATATCTAGAAGTTTCTGAAATCCCTCTAGACATCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39129</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>251228</contig_pos>
        <strand>+</strand>
        <context>AATATCTAGA[A/C]GTTTCTGAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TATCTAGAGATTCAGATTCCTAAGAATCTCTAGAAACTAGAATATCTAGA</left_flank>
        <right_flank>GTTTCTGAAATCCCTCTAGACATCTTTGCAGGCAATCGTTAATAAGAAAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTAATTCAGAAACTTTTCGAATATTAACTACAGTACTTTATGGATGATAAAAGGATGCTTCAGAAAGTTTGGAAAAATCGAAATTCTGGAATCTTCTGGATAATCAAAATTCCATACGAACTAAACTCCTCCTTCTCCCGAGTTATTCTTCCGAGAGCCCAAGTAAATGCAAACACAAAAACTTGTCAATTGTACTCCTCTTTTTTGACACCTTGCAGATTTATGGACGCACCGAGCCTACTCTCGAGAGTTTTTACACACTTTTTGGTGTCAAAAAGTTGGCACCCATAATTCAAATTTTTGGACATTTGGGATACTTTTTGGAGCAAATACCGGAGTGTGACAAGGGGAGCAAAAAATGAAAGATATGAGAAATAAGGGAGGCTTTGGAGAAGCCCAAAATTTCGAAAATCCAGAAAATTCTGTAAGTCAAGAGGAATTTCAAAAGTATCTAGAGATTCAGATTCCTAAGAATCTCTAGAAACTAGAATATCTAGAAGTTTCTGAAATCCCTCTAGACATCTTTGCAGGCAATCGTTAATAAGAAATTCACTTAATAAGAAATTCCATTAATAAGGATCGGAAACCAAATCACACCTGACAGAATATTATGAAAAATGAAAGCTAGCAATTTCTTATCACTATGATTTCTCTAACACCCAAACTGTTCAACCGTTCTCTTCTCTCTGCCCCTCTCTATCCCTCCAACTACCGTAATCCCTTGCATCTCCACCCCCTGGTGGTAGTTGAGTGTCAGTTGTGTTGTCTTCTTCTTCTTCGTGAAAATTGATCGCTGTCTTCCTCTTCGTACATCCTTCGTCGTCTCAGATGCTGCTGCTGCTGGTGGAAAACGTTGCGTTGTTTGGTATTTTTGAGTGTAGAGCGAGTCATCGGTGGTTGTCGCATGATGACGAAGAGATGTCTCCCAAGGAGGATTCTTGGAAAAATTGGGGAGGAAAAATGAGGGATCGAAGTTGGTCGATCTTGAAATCTGGGGGG</canonical>
            <polymorphic>CGTAATTCAGAAACTTTTCGAATATTAACTACAGTACTTTATGGATGATAAAAGGATGCTTCAGAAAGTTTGGAAAAATCGAAATTCTGGAATCTTCTGGATAATCAAAATTCCATACGAACTAAACTCCTCCTTCTCCCGAGTTATTCTTCCGAGAGCCCAAGTAAATGCAAACACAAAAACTTGTCAATTGTACTCCTCTTTTTTGACACCTTGCAGATTTATGGACGCACCGAGCCTACTCTCGAGAGTTTTTACACACTTTTTGGTGTCAAAAAGTTGGCACCCATAATTCAAATTTTTGGACATTTGGGATACTTTTTGGAGCAAATACCGGAGTGTGACAAGGGGAGCAAAAAATGAAAGATATGAGAAATAAGGGAGGCTTTGGAGAAGCCCAAAATTTCGAAAATCCAGAAAATTCTGTAAGTCAAGAGGAATTTCAAAAGTATCTAGAGATTCAGATTCCTAAGAATCTCTAGAAACTAGAATATCTAGAMGTTTCTGAAATCCCTCTAGACATCTTTGCAGGCAATCGTTAATAAGAAATTCACTTAATAAGAAATTCCATTAATAAGGATCGGAAACCAAATCACACCTGACAGAATATTATGAAAAATGAAAGCTAGCAATTTCTTATCACTATGATTTCTCTAACACCCAAACTGTTCAACCGTTCTCTTCTCTCTGCCCCTCTCTATCCCTCCAACTACCGTAATCCCTTGCATCTCCACCCCCTGGTGGTAGTTGAGTGTCAGTTGTGTTGTCTTCTTCTTCTTCGTGAAAATTGATCGCTGTCTTCCTCTTCGTACATCCTTCGTCGTCTCAGATGCTGCTGCTGCTGGTGGAAAACGTTGCGTTGTTTGGTATTTTTGAGTGTAGAGCGAGTCATCGGTGGTTGTCGCATGATGACGAAGAGATGTCTCCCAAGGAGGATTCTTGGAAAAATTGGGGAGGAAAAATGAGGGATCGAAGTTGGTCGATCTTGAAATCTGGGGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAGAAAATTCTGTAAGTCAAGA</pcr_primer_p1>
		<pcr_primer_p2>TGGGTGTTAGAGAAATCATAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAGAAAATTCTGTAAGTCAAGAGGAATTTCAAAAGTATCTAGAGATTCAGATTCCTAAGAATCTCTAGAAACTAGAATATCTAGAAGTTTCTGAAATCCCTCTAGACATCTTTGCAGGCAATCGTTAATAAGAAATTCACTTAATAAGAAATTCCATTAATAAGGATCGGAAACCAAATCACACCTGACAGAATATTATGAAAAATGAAAGCTAGCAATTTCTTATCACTATGATTTCTCTAACACCCA</canonical_amplicon>
		<polymorphic_amplicon>CCAGAAAATTCTGTAAGTCAAGAGGAATTTCAAAAGTATCTAGAGATTCAGATTCCTAAGAATCTCTAGAAACTAGAATATCTAGAMGTTTCTGAAATCCCTCTAGACATCTTTGCAGGCAATCGTTAATAAGAAATTCACTTAATAAGAAATTCCATTAATAAGGATCGGAAACCAAATCACACCTGACAGAATATTATGAAAAATGAAAGCTAGCAATTTCTTATCACTATGATTTCTCTAACACCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39130</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>251298</contig_pos>
        <strand>+</strand>
        <context>AAGAAATTCC[A/C]TTAATAAGGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACATCTTTGCAGGCAATCGTTAATAAGAAATTCACTTAATAAGAAATTCC</left_flank>
        <right_flank>TTAATAAGGATCGGAAACCAAATCACACCTGACAGAATATTATGAAAAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAAAAATCGAAATTCTGGAATCTTCTGGATAATCAAAATTCCATACGAACTAAACTCCTCCTTCTCCCGAGTTATTCTTCCGAGAGCCCAAGTAAATGCAAACACAAAAACTTGTCAATTGTACTCCTCTTTTTTGACACCTTGCAGATTTATGGACGCACCGAGCCTACTCTCGAGAGTTTTTACACACTTTTTGGTGTCAAAAAGTTGGCACCCATAATTCAAATTTTTGGACATTTGGGATACTTTTTGGAGCAAATACCGGAGTGTGACAAGGGGAGCAAAAAATGAAAGATATGAGAAATAAGGGAGGCTTTGGAGAAGCCCAAAATTTCGAAAATCCAGAAAATTCTGTAAGTCAAGAGGAATTTCAAAAGTATCTAGAGATTCAGATTCCTAAGAATCTCTAGAAACTAGAATATCTAGAAGTTTCTGAAATCCCTCTAGACATCTTTGCAGGCAATCGTTAATAAGAAATTCACTTAATAAGAAATTCCATTAATAAGGATCGGAAACCAAATCACACCTGACAGAATATTATGAAAAATGAAAGCTAGCAATTTCTTATCACTATGATTTCTCTAACACCCAAACTGTTCAACCGTTCTCTTCTCTCTGCCCCTCTCTATCCCTCCAACTACCGTAATCCCTTGCATCTCCACCCCCTGGTGGTAGTTGAGTGTCAGTTGTGTTGTCTTCTTCTTCTTCGTGAAAATTGATCGCTGTCTTCCTCTTCGTACATCCTTCGTCGTCTCAGATGCTGCTGCTGCTGGTGGAAAACGTTGCGTTGTTTGGTATTTTTGAGTGTAGAGCGAGTCATCGGTGGTTGTCGCATGATGACGAAGAGATGTCTCCCAAGGAGGATTCTTGGAAAAATTGGGGAGGAAAAATGAGGGATCGAAGTTGGTCGATCTTGAAATCTGGGGGGCCAGAGGAGCTAAAAATGAATCTGAACTTCTGAAAAGTCGAGAAAACCTATAAATAAAGTACATGAAATA</canonical>
            <polymorphic>TGGAAAAATCGAAATTCTGGAATCTTCTGGATAATCAAAATTCCATACGAACTAAACTCCTCCTTCTCCCGAGTTATTCTTCCGAGAGCCCAAGTAAATGCAAACACAAAAACTTGTCAATTGTACTCCTCTTTTTTGACACCTTGCAGATTTATGGACGCACCGAGCCTACTCTCGAGAGTTTTTACACACTTTTTGGTGTCAAAAAGTTGGCACCCATAATTCAAATTTTTGGACATTTGGGATACTTTTTGGAGCAAATACCGGAGTGTGACAAGGGGAGCAAAAAATGAAAGATATGAGAAATAAGGGAGGCTTTGGAGAAGCCCAAAATTTCGAAAATCCAGAAAATTCTGTAAGTCAAGAGGAATTTCAAAAGTATCTAGAGATTCAGATTCCTAAGAATCTCTAGAAACTAGAATATCTAGAAGTTTCTGAAATCCCTCTAGACATCTTTGCAGGCAATCGTTAATAAGAAATTCACTTAATAAGAAATTCCMTTAATAAGGATCGGAAACCAAATCACACCTGACAGAATATTATGAAAAATGAAAGCTAGCAATTTCTTATCACTATGATTTCTCTAACACCCAAACTGTTCAACCGTTCTCTTCTCTCTGCCCCTCTCTATCCCTCCAACTACCGTAATCCCTTGCATCTCCACCCCCTGGTGGTAGTTGAGTGTCAGTTGTGTTGTCTTCTTCTTCTTCGTGAAAATTGATCGCTGTCTTCCTCTTCGTACATCCTTCGTCGTCTCAGATGCTGCTGCTGCTGGTGGAAAACGTTGCGTTGTTTGGTATTTTTGAGTGTAGAGCGAGTCATCGGTGGTTGTCGCATGATGACGAAGAGATGTCTCCCAAGGAGGATTCTTGGAAAAATTGGGGAGGAAAAATGAGGGATCGAAGTTGGTCGATCTTGAAATCTGGGGGGCCAGAGGAGCTAAAAATGAATCTGAACTTCTGAAAAGTCGAGAAAACCTATAAATAAAGTACATGAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCAGAAAATTCTGTAAGTCAAGA</pcr_primer_p1>
		<pcr_primer_p2>TGGGTGTTAGAGAAATCATAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAGAAAATTCTGTAAGTCAAGAGGAATTTCAAAAGTATCTAGAGATTCAGATTCCTAAGAATCTCTAGAAACTAGAATATCTAGAAGTTTCTGAAATCCCTCTAGACATCTTTGCAGGCAATCGTTAATAAGAAATTCACTTAATAAGAAATTCCATTAATAAGGATCGGAAACCAAATCACACCTGACAGAATATTATGAAAAATGAAAGCTAGCAATTTCTTATCACTATGATTTCTCTAACACCCA</canonical_amplicon>
		<polymorphic_amplicon>CCAGAAAATTCTGTAAGTCAAGAGGAATTTCAAAAGTATCTAGAGATTCAGATTCCTAAGAATCTCTAGAAACTAGAATATCTAGAAGTTTCTGAAATCCCTCTAGACATCTTTGCAGGCAATCGTTAATAAGAAATTCACTTAATAAGAAATTCCMTTAATAAGGATCGGAAACCAAATCACACCTGACAGAATATTATGAAAAATGAAAGCTAGCAATTTCTTATCACTATGATTTCTCTAACACCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39131</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>253872</contig_pos>
        <strand>+</strand>
        <context>GAGGAGGCTG[A/T]AATTAATRAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGCGTTGGTTTTGGAGCTGTCGCAATGCATAATTGGGTAGAGGAGGCTG</left_flank>
        <right_flank>AATTAATAATAGGGATAAAAAGACTACAAACTACAAAATCCAAACAAATT</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGGTGTGGGGTACAGTAACAACATGAAAAAGGAATCCAAGACCCTGAAGTATACCATCAACTTTAAGCTCGATTATCTCAATTCCTATGAAAGATATCAGAAATTAGTCAACTGACATATTATTTATCACAATGTCACCAATAGTTAATCAGTTGACAAACTTTTGATATCTTTCACAGGAATCGAGATAATTGAGCTGAAAGTTGACGGTTTGGGCGGAGCATCTTTAAAGGTGTGGGGTACAATAAAAATTCAAAAAAAGTTCATAAAAAAGGCAAATTTTATTTCAATAGCAGGTCAATTTTCAATCTCAAATCCCCCTTCCTTCACATGAAACACTTCAGATTCCGACCACGGTTGGATTAGGTCATCCTTGTTACATCGTTCCAGCCAAGCTGGTTTCAGAACGGTGCAAGTGTTCTGAGAAATCGCTTGAGCCGTTTTGGGATGCGTTGGTTTTGGAGCTGTCGCAATGCATAATTGGGTAGAGGAGGCTGTAATTAATAATAGGGATAAAAAGACTACAAACTACAAAATCCAAACAAATTTTTTTTAGTTTGAATCTCCTAAGAATTCTGGTGAAACTTTGAGATTTCTAGCTCTTCTAGAAGCTGAGATAGGACAACTTGAAGTTCATAAGAGACGCAGACAGCTAGAGTGTCTCGTTGTCTGCGTCTCTGACCTCCTAAACTTCAAATGACGCTATCTCGGTTCCTAGGTGAGCTAGAAATTAAATTCTTTCACTATTCTACACAGAACTTTTCATAGAATCTGTTTCACATTAAACATTTCGTTGAAATCTGAACTTTTTTCGAGCATATTTTAAAAGAGTTGTAAATCAAACAAGATCAGGAGGCTCTTAGGGATTATCTGGCCTCCGTAGCCTACCACCACTTCAATTGATGACTTACACCCTCTAACAGACAGATGGCCTCTAGCTTTCGAAGCGATCAACACTTGTACTATTTATCATTGTCTTGTCCCTTCAGCAGGGTTAA</canonical>
            <polymorphic>AAAGGTGTGGGGTACAGTAACAACATGAAAAAGGAATCCAAGACCCTGAAGTATACCATCAACTTTAAGCTCGATTATCTCAATTCCTATGAAAGATATCAGAAATTAGTCAACTGACATATTATTTATCACAATGTCACCAATAGTTAATCAGTTGACAAACTTTTGATATCTTTCACAGGAATCGAGATAATTGAGCTGAAAGTTGACGGTTTGGGCGGAGCATCTTTAAAGGTGTGGGGTACAATAAAAATTCAAAAAAAGTTCATAAAAAAGGCAAATTTTATTTCAATAGCAGGTCAATTTTCAATCTCAAATCCCCCTTCCTTCACATGAAACACTTCAGATTCCGACCACGGTTGGATTAGGTCATCCTTGTTACATCGTTCCAGCCAAGCTGGTTTCAGAACGGTGCAAGTGTTCTGAGAAATCGCTTGAGCCGTTTTGGGATGCGTTGGTTTTGGAGCTGTCGCAATGCATAATTGGGTAGAGGAGGCTGWAATTAATAATAGGGATAAAAAGACTACAAACTACAAAATCCAAACAAATTTTTTTTAGTTTGAATCTCCTAAGAATTCTGGTGAAACTTTGAGATTTCTAGCTCTTCTAGAAGCTGAGATAGGACAACTTGAAGTTCATAAGAGACGCAGACAGCTAGAGTGTCTCGTTGTCTGCGTCTCTGACCTCCTAAACTTCAAATGACGCTATCTCGGTTCCTAGGTGAGCTAGAAATTAAATTCTTTCACTATTCTACACAGAACTTTTCATAGAATCTGTTTCACATTAAACATTTCGTTGAAATCTGAACTTTTTTCGAGCATATTTTAAAAGAGTTGTAAATCAAACAAGATCAGGAGGCTCTTAGGGATTATCTGGCCTCCGTAGCCTACCACCACTTCAATTGATGACTTACACCCTCTAACAGACAGATGGCCTCTAGCTTTCGAAGCGATCAACACTTGTACTATTTATCATTGTCTTGTCCCTTCAGCAGGGTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCTGAGAAATCGCTTGAG</pcr_primer_p1>
		<pcr_primer_p2>CAGATTCTATGAAAAGTTCTGTGT</pcr_primer_p2>
		<pcr_amplicon_size>357</pcr_amplicon_size>
		<canonical_amplicon>GTTCTGAGAAATCGCTTGAGCCGTTTTGGGATGCGTTGGTTTTGGAGCTGTCGCAATGCATAATTGGGTAGAGGAGGCTGTAATTAATAATAGGGATAAAAAGACTACAAACTACAAAATCCAAACAAATTTTTTTTAGTTTGAATCTCCTAAGAATTCTGGTGAAACTTTGAGATTTCTAGCTCTTCTAGAAGCTGAGATAGGACAACTTGAAGTTCATAAGAGACGCAGACAGCTAGAGTGTCTCGTTGTCTGCGTCTCTGACCTCCTAAACTTCAAATGACGCTATCTCGGTTCCTAGGTGAGCTAGAAATTAAATTCTTTCACTATTCTACACAGAACTTTTCATAGAATCTG</canonical_amplicon>
		<polymorphic_amplicon>GTTCTGAGAAATCGCTTGAGCCGTTTTGGGATGCGTTGGTTTTGGAGCTGTCGCAATGCATAATTGGGTAGAGGAGGCTGWAATTAATAATAGGGATAAAAAGACTACAAACTACAAAATCCAAACAAATTTTTTTTAGTTTGAATCTCCTAAGAATTCTGGTGAAACTTTGAGATTTCTAGCTCTTCTAGAAGCTGAGATAGGACAACTTGAAGTTCATAAGAGACGCAGACAGCTAGAGTGTCTCGTTGTCTGCGTCTCTGACCTCCTAAACTTCAAATGACGCTATCTCGGTTCCTAGGTGAGCTAGAAATTAAATTCTTTCACTATTCTACACAGAACTTTTCATAGAATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39132</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>253880</contig_pos>
        <strand>+</strand>
        <context>TGWAATTAAT[A/G]ATAGGGATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTTGGAGCTGTCGCAATGCATAATTGGGTAGAGGAGGCTGTAATTAAT</left_flank>
        <right_flank>ATAGGGATAAAAAGACTACAAACTACAAAATCCAAACAAATTTTTTTTAG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGGTACAGTAACAACATGAAAAAGGAATCCAAGACCCTGAAGTATACCATCAACTTTAAGCTCGATTATCTCAATTCCTATGAAAGATATCAGAAATTAGTCAACTGACATATTATTTATCACAATGTCACCAATAGTTAATCAGTTGACAAACTTTTGATATCTTTCACAGGAATCGAGATAATTGAGCTGAAAGTTGACGGTTTGGGCGGAGCATCTTTAAAGGTGTGGGGTACAATAAAAATTCAAAAAAAGTTCATAAAAAAGGCAAATTTTATTTCAATAGCAGGTCAATTTTCAATCTCAAATCCCCCTTCCTTCACATGAAACACTTCAGATTCCGACCACGGTTGGATTAGGTCATCCTTGTTACATCGTTCCAGCCAAGCTGGTTTCAGAACGGTGCAAGTGTTCTGAGAAATCGCTTGAGCCGTTTTGGGATGCGTTGGTTTTGGAGCTGTCGCAATGCATAATTGGGTAGAGGAGGCTGTAATTAATAATAGGGATAAAAAGACTACAAACTACAAAATCCAAACAAATTTTTTTTAGTTTGAATCTCCTAAGAATTCTGGTGAAACTTTGAGATTTCTAGCTCTTCTAGAAGCTGAGATAGGACAACTTGAAGTTCATAAGAGACGCAGACAGCTAGAGTGTCTCGTTGTCTGCGTCTCTGACCTCCTAAACTTCAAATGACGCTATCTCGGTTCCTAGGTGAGCTAGAAATTAAATTCTTTCACTATTCTACACAGAACTTTTCATAGAATCTGTTTCACATTAAACATTTCGTTGAAATCTGAACTTTTTTCGAGCATATTTTAAAAGAGTTGTAAATCAAACAAGATCAGGAGGCTCTTAGGGATTATCTGGCCTCCGTAGCCTACCACCACTTCAATTGATGACTTACACCCTCTAACAGACAGATGGCCTCTAGCTTTCGAAGCGATCAACACTTGTACTATTTATCATTGTCTTGTCCCTTCAGCAGGGTTAAAGAGACAG</canonical>
            <polymorphic>GGGGTACAGTAACAACATGAAAAAGGAATCCAAGACCCTGAAGTATACCATCAACTTTAAGCTCGATTATCTCAATTCCTATGAAAGATATCAGAAATTAGTCAACTGACATATTATTTATCACAATGTCACCAATAGTTAATCAGTTGACAAACTTTTGATATCTTTCACAGGAATCGAGATAATTGAGCTGAAAGTTGACGGTTTGGGCGGAGCATCTTTAAAGGTGTGGGGTACAATAAAAATTCAAAAAAAGTTCATAAAAAAGGCAAATTTTATTTCAATAGCAGGTCAATTTTCAATCTCAAATCCCCCTTCCTTCACATGAAACACTTCAGATTCCGACCACGGTTGGATTAGGTCATCCTTGTTACATCGTTCCAGCCAAGCTGGTTTCAGAACGGTGCAAGTGTTCTGAGAAATCGCTTGAGCCGTTTTGGGATGCGTTGGTTTTGGAGCTGTCGCAATGCATAATTGGGTAGAGGAGGCTGTAATTAATRATAGGGATAAAAAGACTACAAACTACAAAATCCAAACAAATTTTTTTTAGTTTGAATCTCCTAAGAATTCTGGTGAAACTTTGAGATTTCTAGCTCTTCTAGAAGCTGAGATAGGACAACTTGAAGTTCATAAGAGACGCAGACAGCTAGAGTGTCTCGTTGTCTGCGTCTCTGACCTCCTAAACTTCAAATGACGCTATCTCGGTTCCTAGGTGAGCTAGAAATTAAATTCTTTCACTATTCTACACAGAACTTTTCATAGAATCTGTTTCACATTAAACATTTCGTTGAAATCTGAACTTTTTTCGAGCATATTTTAAAAGAGTTGTAAATCAAACAAGATCAGGAGGCTCTTAGGGATTATCTGGCCTCCGTAGCCTACCACCACTTCAATTGATGACTTACACCCTCTAACAGACAGATGGCCTCTAGCTTTCGAAGCGATCAACACTTGTACTATTTATCATTGTCTTGTCCCTTCAGCAGGGTTAAAGAGACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTCTGAGAAATCGCTTGAG</pcr_primer_p1>
		<pcr_primer_p2>CAGATTCTATGAAAAGTTCTGTGT</pcr_primer_p2>
		<pcr_amplicon_size>357</pcr_amplicon_size>
		<canonical_amplicon>GTTCTGAGAAATCGCTTGAGCCGTTTTGGGATGCGTTGGTTTTGGAGCTGTCGCAATGCATAATTGGGTAGAGGAGGCTGTAATTAATAATAGGGATAAAAAGACTACAAACTACAAAATCCAAACAAATTTTTTTTAGTTTGAATCTCCTAAGAATTCTGGTGAAACTTTGAGATTTCTAGCTCTTCTAGAAGCTGAGATAGGACAACTTGAAGTTCATAAGAGACGCAGACAGCTAGAGTGTCTCGTTGTCTGCGTCTCTGACCTCCTAAACTTCAAATGACGCTATCTCGGTTCCTAGGTGAGCTAGAAATTAAATTCTTTCACTATTCTACACAGAACTTTTCATAGAATCTG</canonical_amplicon>
		<polymorphic_amplicon>GTTCTGAGAAATCGCTTGAGCCGTTTTGGGATGCGTTGGTTTTGGAGCTGTCGCAATGCATAATTGGGTAGAGGAGGCTGTAATTAATRATAGGGATAAAAAGACTACAAACTACAAAATCCAAACAAATTTTTTTTAGTTTGAATCTCCTAAGAATTCTGGTGAAACTTTGAGATTTCTAGCTCTTCTAGAAGCTGAGATAGGACAACTTGAAGTTCATAAGAGACGCAGACAGCTAGAGTGTCTCGTTGTCTGCGTCTCTGACCTCCTAAACTTCAAATGACGCTATCTCGGTTCCTAGGTGAGCTAGAAATTAAATTCTTTCACTATTCTACACAGAACTTTTCATAGAATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39133</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>253896</contig_pos>
        <strand>+</strand>
        <context>GATAAAAAGA[A/C]TACAAACTAC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATGCATAATTGGGTAGAGGAGGCTGTAATTAATAATAGGGATAAAAAGA</left_flank>
        <right_flank>TACAAACTACAAAATCCAAACAAATTTTTTTTAGTTTGAATCTCCTAAGA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAAAAAGGAATCCAAGACCCTGAAGTATACCATCAACTTTAAGCTCGATTATCTCAATTCCTATGAAAGATATCAGAAATTAGTCAACTGACATATTATTTATCACAATGTCACCAATAGTTAATCAGTTGACAAACTTTTGATATCTTTCACAGGAATCGAGATAATTGAGCTGAAAGTTGACGGTTTGGGCGGAGCATCTTTAAAGGTGTGGGGTACAATAAAAATTCAAAAAAAGTTCATAAAAAAGGCAAATTTTATTTCAATAGCAGGTCAATTTTCAATCTCAAATCCCCCTTCCTTCACATGAAACACTTCAGATTCCGACCACGGTTGGATTAGGTCATCCTTGTTACATCGTTCCAGCCAAGCTGGTTTCAGAACGGTGCAAGTGTTCTGAGAAATCGCTTGAGCCGTTTTGGGATGCGTTGGTTTTGGAGCTGTCGCAATGCATAATTGGGTAGAGGAGGCTGTAATTAATAATAGGGATAAAAAGACTACAAACTACAAAATCCAAACAAATTTTTTTTAGTTTGAATCTCCTAAGAATTCTGGTGAAACTTTGAGATTTCTAGCTCTTCTAGAAGCTGAGATAGGACAACTTGAAGTTCATAAGAGACGCAGACAGCTAGAGTGTCTCGTTGTCTGCGTCTCTGACCTCCTAAACTTCAAATGACGCTATCTCGGTTCCTAGGTGAGCTAGAAATTAAATTCTTTCACTATTCTACACAGAACTTTTCATAGAATCTGTTTCACATTAAACATTTCGTTGAAATCTGAACTTTTTTCGAGCATATTTTAAAAGAGTTGTAAATCAAACAAGATCAGGAGGCTCTTAGGGATTATCTGGCCTCCGTAGCCTACCACCACTTCAATTGATGACTTACACCCTCTAACAGACAGATGGCCTCTAGCTTTCGAAGCGATCAACACTTGTACTATTTATCATTGTCTTGTCCCTTCAGCAGGGTTAAAGAGACAGATAAGCTTAGGAATTG</canonical>
            <polymorphic>ATGAAAAAGGAATCCAAGACCCTGAAGTATACCATCAACTTTAAGCTCGATTATCTCAATTCCTATGAAAGATATCAGAAATTAGTCAACTGACATATTATTTATCACAATGTCACCAATAGTTAATCAGTTGACAAACTTTTGATATCTTTCACAGGAATCGAGATAATTGAGCTGAAAGTTGACGGTTTGGGCGGAGCATCTTTAAAGGTGTGGGGTACAATAAAAATTCAAAAAAAGTTCATAAAAAAGGCAAATTTTATTTCAATAGCAGGTCAATTTTCAATCTCAAATCCCCCTTCCTTCACATGAAACACTTCAGATTCCGACCACGGTTGGATTAGGTCATCCTTGTTACATCGTTCCAGCCAAGCTGGTTTCAGAACGGTGCAAGTGTTCTGAGAAATCGCTTGAGCCGTTTTGGGATGCGTTGGTTTTGGAGCTGTCGCAATGCATAATTGGGTAGAGGAGGCTGTAATTAATAATAGGGATAAAAAGAMTACAAACTACAAAATCCAAACAAATTTTTTTTAGTTTGAATCTCCTAAGAATTCTGGTGAAACTTTGAGATTTCTAGCTCTTCTAGAAGCTGAGATAGGACAACTTGAAGTTCATAAGAGACGCAGACAGCTAGAGTGTCTCGTTGTCTGCGTCTCTGACCTCCTAAACTTCAAATGACGCTATCTCGGTTCCTAGGTGAGCTAGAAATTAAATTCTTTCACTATTCTACACAGAACTTTTCATAGAATCTGTTTCACATTAAACATTTCGTTGAAATCTGAACTTTTTTCGAGCATATTTTAAAAGAGTTGTAAATCAAACAAGATCAGGAGGCTCTTAGGGATTATCTGGCCTCCGTAGCCTACCACCACTTCAATTGATGACTTACACCCTCTAACAGACAGATGGCCTCTAGCTTTCGAAGCGATCAACACTTGTACTATTTATCATTGTCTTGTCCCTTCAGCAGGGTTAAAGAGACAGATAAGCTTAGGAATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATGCATAATTGGGTAGAGGA</pcr_primer_p1>
		<pcr_primer_p2>CAGATTCTATGAAAAGTTCTGTGT</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>AATGCATAATTGGGTAGAGGAGGCTGTAATTAATAATAGGGATAAAAAGACTACAAACTACAAAATCCAAACAAATTTTTTTTAGTTTGAATCTCCTAAGAATTCTGGTGAAACTTTGAGATTTCTAGCTCTTCTAGAAGCTGAGATAGGACAACTTGAAGTTCATAAGAGACGCAGACAGCTAGAGTGTCTCGTTGTCTGCGTCTCTGACCTCCTAAACTTCAAATGACGCTATCTCGGTTCCTAGGTGAGCTAGAAATTAAATTCTTTCACTATTCTACACAGAACTTTTCATAGAATCTG</canonical_amplicon>
		<polymorphic_amplicon>AATGCATAATTGGGTAGAGGAGGCTGTAATTAATAATAGGGATAAAAAGAMTACAAACTACAAAATCCAAACAAATTTTTTTTAGTTTGAATCTCCTAAGAATTCTGGTGAAACTTTGAGATTTCTAGCTCTTCTAGAAGCTGAGATAGGACAACTTGAAGTTCATAAGAGACGCAGACAGCTAGAGTGTCTCGTTGTCTGCGTCTCTGACCTCCTAAACTTCAAATGACGCTATCTCGGTTCCTAGGTGAGCTAGAAATTAAATTCTTTCACTATTCTACACAGAACTTTTCATAGAATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39134</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>253921</contig_pos>
        <strand>+</strand>
        <context>TCCAAACAAA[A/G]TTTTTTTAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAATTAATAATAGGGATAAAAAGACTACAAACTACAAAATCCAAACAAA</left_flank>
        <right_flank>TTTTTTTAGTTTGAATCTCCTAAGAATTCTGGTGAAACTTTGAGATTTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTATACCATCAACTTTAAGCTCGATTATCTCAATTCCTATGAAAGATATCAGAAATTAGTCAACTGACATATTATTTATCACAATGTCACCAATAGTTAATCAGTTGACAAACTTTTGATATCTTTCACAGGAATCGAGATAATTGAGCTGAAAGTTGACGGTTTGGGCGGAGCATCTTTAAAGGTGTGGGGTACAATAAAAATTCAAAAAAAGTTCATAAAAAAGGCAAATTTTATTTCAATAGCAGGTCAATTTTCAATCTCAAATCCCCCTTCCTTCACATGAAACACTTCAGATTCCGACCACGGTTGGATTAGGTCATCCTTGTTACATCGTTCCAGCCAAGCTGGTTTCAGAACGGTGCAAGTGTTCTGAGAAATCGCTTGAGCCGTTTTGGGATGCGTTGGTTTTGGAGCTGTCGCAATGCATAATTGGGTAGAGGAGGCTGTAATTAATAATAGGGATAAAAAGACTACAAACTACAAAATCCAAACAAATTTTTTTTAGTTTGAATCTCCTAAGAATTCTGGTGAAACTTTGAGATTTCTAGCTCTTCTAGAAGCTGAGATAGGACAACTTGAAGTTCATAAGAGACGCAGACAGCTAGAGTGTCTCGTTGTCTGCGTCTCTGACCTCCTAAACTTCAAATGACGCTATCTCGGTTCCTAGGTGAGCTAGAAATTAAATTCTTTCACTATTCTACACAGAACTTTTCATAGAATCTGTTTCACATTAAACATTTCGTTGAAATCTGAACTTTTTTCGAGCATATTTTAAAAGAGTTGTAAATCAAACAAGATCAGGAGGCTCTTAGGGATTATCTGGCCTCCGTAGCCTACCACCACTTCAATTGATGACTTACACCCTCTAACAGACAGATGGCCTCTAGCTTTCGAAGCGATCAACACTTGTACTATTTATCATTGTCTTGTCCCTTCAGCAGGGTTAAAGAGACAGATAAGCTTAGGAATTGAAAAAATACATTTCAGGGGATTCTG</canonical>
            <polymorphic>AGTATACCATCAACTTTAAGCTCGATTATCTCAATTCCTATGAAAGATATCAGAAATTAGTCAACTGACATATTATTTATCACAATGTCACCAATAGTTAATCAGTTGACAAACTTTTGATATCTTTCACAGGAATCGAGATAATTGAGCTGAAAGTTGACGGTTTGGGCGGAGCATCTTTAAAGGTGTGGGGTACAATAAAAATTCAAAAAAAGTTCATAAAAAAGGCAAATTTTATTTCAATAGCAGGTCAATTTTCAATCTCAAATCCCCCTTCCTTCACATGAAACACTTCAGATTCCGACCACGGTTGGATTAGGTCATCCTTGTTACATCGTTCCAGCCAAGCTGGTTTCAGAACGGTGCAAGTGTTCTGAGAAATCGCTTGAGCCGTTTTGGGATGCGTTGGTTTTGGAGCTGTCGCAATGCATAATTGGGTAGAGGAGGCTGTAATTAATAATAGGGATAAAAAGACTACAAACTACAAAATCCAAACAAARTTTTTTTAGTTTGAATCTCCTAAGAATTCTGGTGAAACTTTGAGATTTCTAGCTCTTCTAGAAGCTGAGATAGGACAACTTGAAGTTCATAAGAGACGCAGACAGCTAGAGTGTCTCGTTGTCTGCGTCTCTGACCTCCTAAACTTCAAATGACGCTATCTCGGTTCCTAGGTGAGCTAGAAATTAAATTCTTTCACTATTCTACACAGAACTTTTCATAGAATCTGTTTCACATTAAACATTTCGTTGAAATCTGAACTTTTTTCGAGCATATTTTAAAAGAGTTGTAAATCAAACAAGATCAGGAGGCTCTTAGGGATTATCTGGCCTCCGTAGCCTACCACCACTTCAATTGATGACTTACACCCTCTAACAGACAGATGGCCTCTAGCTTTCGAAGCGATCAACACTTGTACTATTTATCATTGTCTTGTCCCTTCAGCAGGGTTAAAGAGACAGATAAGCTTAGGAATTGAAAAAATACATTTCAGGGGATTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>314 267 202 162 28 27</canonical_bands>
                <polymorphic_bands>314 294 202 162 28</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>179 164 157 120 88 60 46 32 30 28 27 22 22 20 5</canonical_bands>
                <polymorphic_bands>179 164 157 120 88 73 60 32 30 28 22 22 20 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGCATAATTGGGTAGAGGAG</pcr_primer_p1>
		<pcr_primer_p2>CAGATTCTATGAAAAGTTCTGTGT</pcr_primer_p2>
		<pcr_amplicon_size>302</pcr_amplicon_size>
		<canonical_amplicon>ATGCATAATTGGGTAGAGGAGGCTGTAATTAATAATAGGGATAAAAAGACTACAAACTACAAAATCCAAACAAATTTTTTTTAGTTTGAATCTCCTAAGAATTCTGGTGAAACTTTGAGATTTCTAGCTCTTCTAGAAGCTGAGATAGGACAACTTGAAGTTCATAAGAGACGCAGACAGCTAGAGTGTCTCGTTGTCTGCGTCTCTGACCTCCTAAACTTCAAATGACGCTATCTCGGTTCCTAGGTGAGCTAGAAATTAAATTCTTTCACTATTCTACACAGAACTTTTCATAGAATCTG</canonical_amplicon>
		<polymorphic_amplicon>ATGCATAATTGGGTAGAGGAGGCTGTAATTAATAATAGGGATAAAAAGACTACAAACTACAAAATCCAAACAAARTTTTTTTAGTTTGAATCTCCTAAGAATTCTGGTGAAACTTTGAGATTTCTAGCTCTTCTAGAAGCTGAGATAGGACAACTTGAAGTTCATAAGAGACGCAGACAGCTAGAGTGTCTCGTTGTCTGCGTCTCTGACCTCCTAAACTTCAAATGACGCTATCTCGGTTCCTAGGTGAGCTAGAAATTAAATTCTTTCACTATTCTACACAGAACTTTTCATAGAATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39135</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>253945</contig_pos>
        <strand></strand>
        <context>AATCTCCTAA[G/A]AATTCTGGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACTACAAACTACAAAATCCAAACAAATTTTTTTTAGTTTGAATCTCCTAA</left_flank>
        <right_flank>AATTCTGGTGAAACTTTGAGATTTCTAGCTCTTCTAGAAGCTGAGATAGG</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTATCTCAATTCCTATGAAAGATATCAGAAATTAGTCAACTGACATATTATTTATCACAATGTCACCAATAGTTAATCAGTTGACAAACTTTTGATATCTTTCACAGGAATCGAGATAATTGAGCTGAAAGTTGACGGTTTGGGCGGAGCATCTTTAAAGGTGTGGGGTACAATAAAAATTCAAAAAAAGTTCATAAAAAAGGCAAATTTTATTTCAATAGCAGGTCAATTTTCAATCTCAAATCCCCCTTCCTTCACATGAAACACTTCAGATTCCGACCACGGTTGGATTAGGTCATCCTTGTTACATCGTTCCAGCCAAGCTGGTTTCAGAACGGTGCAAGTGTTCTGAGAAATCGCTTGAGCCGTTTTGGGATGCGTTGGTTTTGGAGCTGTCGCAATGCATAATTGGGTAGAGGAGGCTGTAATTAATAATAGGGATAAAAAGACTACAAACTACAAAATCCAAACAAATTTTTTTTAGTTTGAATCTCCTAAGAATTCTGGTGAAACTTTGAGATTTCTAGCTCTTCTAGAAGCTGAGATAGGACAACTTGAAGTTCATAAGAGACGCAGACAGCTAGAGTGTCTCGTTGTCTGCGTCTCTGACCTCCTAAACTTCAAATGACGCTATCTCGGTTCCTAGGTGAGCTAGAAATTAAATTCTTTCACTATTCTACACAGAACTTTTCATAGAATCTGTTTCACATTAAACATTTCGTTGAAATCTGAACTTTTTTCGAGCATATTTTAAAAGAGTTGTAAATCAAACAAGATCAGGAGGCTCTTAGGGATTATCTGGCCTCCGTAGCCTACCACCACTTCAATTGATGACTTACACCCTCTAACAGACAGATGGCCTCTAGCTTTCGAAGCGATCAACACTTGTACTATTTATCATTGTCTTGTCCCTTCAGCAGGGTTAAAGAGACAGATAAGCTTAGGAATTGAAAAAATACATTTCAGGGGATTCTGAAAATCCTAAGAAATTCAAAAAAT</canonical>
            <polymorphic>ATTATCTCAATTCCTATGAAAGATATCAGAAATTAGTCAACTGACATATTATTTATCACAATGTCACCAATAGTTAATCAGTTGACAAACTTTTGATATCTTTCACAGGAATCGAGATAATTGAGCTGAAAGTTGACGGTTTGGGCGGAGCATCTTTAAAGGTGTGGGGTACAATAAAAATTCAAAAAAAGTTCATAAAAAAGGCAAATTTTATTTCAATAGCAGGTCAATTTTCAATCTCAAATCCCCCTTCCTTCACATGAAACACTTCAGATTCCGACCACGGTTGGATTAGGTCATCCTTGTTACATCGTTCCAGCCAAGCTGGTTTCAGAACGGTGCAAGTGTTCTGAGAAATCGCTTGAGCCGTTTTGGGATGCGTTGGTTTTGGAGCTGTCGCAATGCATAATTGGGTAGAGGAGGCTGTAATTAATAATAGGGATAAAAAGACTACAAACTACAAAATCCAAACAAATTTTTTTTAGTTTGAATCTCCTAARAATTCTGGTGAAACTTTGAGATTTCTAGCTCTTCTAGAAGCTGAGATAGGACAACTTGAAGTTCATAAGAGACGCAGACAGCTAGAGTGTCTCGTTGTCTGCGTCTCTGACCTCCTAAACTTCAAATGACGCTATCTCGGTTCCTAGGTGAGCTAGAAATTAAATTCTTTCACTATTCTACACAGAACTTTTCATAGAATCTGTTTCACATTAAACATTTCGTTGAAATCTGAACTTTTTTCGAGCATATTTTAAAAGAGTTGTAAATCAAACAAGATCAGGAGGCTCTTAGGGATTATCTGGCCTCCGTAGCCTACCACCACTTCAATTGATGACTTACACCCTCTAACAGACAGATGGCCTCTAGCTTTCGAAGCGATCAACACTTGTACTATTTATCATTGTCTTGTCCCTTCAGCAGGGTTAAAGAGACAGATAAGCTTAGGAATTGAAAAAATACATTTCAGGGGATTCTGAAAATCCTAAGAAATTCAAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>326 267 178 162 28 27 12</canonical_bands>
                <polymorphic_bands>326 267 189 178 28 12</polymorphic_bands>
            </assay>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>350 247 153 146 45 42 17</canonical_bands>
                <polymorphic_bands>350 247 191 153 42 17</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGCATAATTGGGTAGAGGAG</pcr_primer_p1>
		<pcr_primer_p2>CAGATTCTATGAAAAGTTCTGTGT</pcr_primer_p2>
		<pcr_amplicon_size>302</pcr_amplicon_size>
		<canonical_amplicon>ATGCATAATTGGGTAGAGGAGGCTGTAATTAATAATAGGGATAAAAAGACTACAAACTACAAAATCCAAACAAATTTTTTTTAGTTTGAATCTCCTAAGAATTCTGGTGAAACTTTGAGATTTCTAGCTCTTCTAGAAGCTGAGATAGGACAACTTGAAGTTCATAAGAGACGCAGACAGCTAGAGTGTCTCGTTGTCTGCGTCTCTGACCTCCTAAACTTCAAATGACGCTATCTCGGTTCCTAGGTGAGCTAGAAATTAAATTCTTTCACTATTCTACACAGAACTTTTCATAGAATCTG</canonical_amplicon>
		<polymorphic_amplicon>ATGCATAATTGGGTAGAGGAGGCTGTAATTAATAATAGGGATAAAAAGACTACAAACTACAAAATCCAAACAAATTTTTTTTAGTTTGAATCTCCTAARAATTCTGGTGAAACTTTGAGATTTCTAGCTCTTCTAGAAGCTGAGATAGGACAACTTGAAGTTCATAAGAGACGCAGACAGCTAGAGTGTCTCGTTGTCTGCGTCTCTGACCTCCTAAACTTCAAATGACGCTATCTCGGTTCCTAGGTGAGCTAGAAATTAAATTCTTTCACTATTCTACACAGAACTTTTCATAGAATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39136</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>253985</contig_pos>
        <strand></strand>
        <context>tcttctagaa[G/A]ctgagatagg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATCTCCTAAGAATTCTGGTGAAACTTTGAGATTTCTAGCTCTTCTAGAA</left_flank>
        <right_flank>CTGAGATAGGACAACTTGAAGTTCATAAGAGACGCAGACAGCTAGAGTGT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGACATATTATTTATCACAATGTCACCAATAGTTAATCAGTTGACAAACTTTTGATATCTTTCACAGGAATCGAGATAATTGAGCTGAAAGTTGACGGTTTGGGCGGAGCATCTTTAAAGGTGTGGGGTACAATAAAAATTCAAAAAAAGTTCATAAAAAAGGCAAATTTTATTTCAATAGCAGGTCAATTTTCAATCTCAAATCCCCCTTCCTTCACATGAAACACTTCAGATTCCGACCACGGTTGGATTAGGTCATCCTTGTTACATCGTTCCAGCCAAGCTGGTTTCAGAACGGTGCAAGTGTTCTGAGAAATCGCTTGAGCCGTTTTGGGATGCGTTGGTTTTGGAGCTGTCGCAATGCATAATTGGGTAGAGGAGGCTGTAATTAATAATAGGGATAAAAAGACTACAAACTACAAAATCCAAACAAATTTTTTTTAGTTTGAATCTCCTAAGAATTCTGGTGAAACTTTGAGATTTCTAGCTCTTCTAGAAGCTGAGATAGGACAACTTGAAGTTCATAAGAGACGCAGACAGCTAGAGTGTCTCGTTGTCTGCGTCTCTGACCTCCTAAACTTCAAATGACGCTATCTCGGTTCCTAGGTGAGCTAGAAATTAAATTCTTTCACTATTCTACACAGAACTTTTCATAGAATCTGTTTCACATTAAACATTTCGTTGAAATCTGAACTTTTTTCGAGCATATTTTAAAAGAGTTGTAAATCAAACAAGATCAGGAGGCTCTTAGGGATTATCTGGCCTCCGTAGCCTACCACCACTTCAATTGATGACTTACACCCTCTAACAGACAGATGGCCTCTAGCTTTCGAAGCGATCAACACTTGTACTATTTATCATTGTCTTGTCCCTTCAGCAGGGTTAAAGAGACAGATAAGCTTAGGAATTGAAAAAATACATTTCAGGGGATTCTGAAAATCCTAAGAAATTCAAAAAATGCTTAGAAATCCAAAAAGTGCCCAAAACTCCAAAAATTCT</canonical>
            <polymorphic>CTGACATATTATTTATCACAATGTCACCAATAGTTAATCAGTTGACAAACTTTTGATATCTTTCACAGGAATCGAGATAATTGAGCTGAAAGTTGACGGTTTGGGCGGAGCATCTTTAAAGGTGTGGGGTACAATAAAAATTCAAAAAAAGTTCATAAAAAAGGCAAATTTTATTTCAATAGCAGGTCAATTTTCAATCTCAAATCCCCCTTCCTTCACATGAAACACTTCAGATTCCGACCACGGTTGGATTAGGTCATCCTTGTTACATCGTTCCAGCCAAGCTGGTTTCAGAACGGTGCAAGTGTTCTGAGAAATCGCTTGAGCCGTTTTGGGATGCGTTGGTTTTGGAGCTGTCGCAATGCATAATTGGGTAGAGGAGGCTGTAATTAATAATAGGGATAAAAAGACTACAAACTACAAAATCCAAACAAATTTTTTTTAGTTTGAATCTCCTAAGAATTCTGGTGAAACTTTGAGATTTCTAGCTCTTCTAGAARCTGAGATAGGACAACTTGAAGTTCATAAGAGACGCAGACAGCTAGAGTGTCTCGTTGTCTGCGTCTCTGACCTCCTAAACTTCAAATGACGCTATCTCGGTTCCTAGGTGAGCTAGAAATTAAATTCTTTCACTATTCTACACAGAACTTTTCATAGAATCTGTTTCACATTAAACATTTCGTTGAAATCTGAACTTTTTTCGAGCATATTTTAAAAGAGTTGTAAATCAAACAAGATCAGGAGGCTCTTAGGGATTATCTGGCCTCCGTAGCCTACCACCACTTCAATTGATGACTTACACCCTCTAACAGACAGATGGCCTCTAGCTTTCGAAGCGATCAACACTTGTACTATTTATCATTGTCTTGTCCCTTCAGCAGGGTTAAAGAGACAGATAAGCTTAGGAATTGAAAAAATACATTTCAGGGGATTCTGAAAATCCTAAGAAATTCAAAAAATGCTTAGAAATCCAAAAAGTGCCCAAAACTCCAAAAATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>215 199 135 100 85 73 71 69 41 12</canonical_bands>
                <polymorphic_bands>215 199 135 100 85 73 71 69 53</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>194 133 105 100 85 73 71 48 42 41 30 27 18 12 9 7 5</canonical_bands>
                <polymorphic_bands>194 133 105 100 85 73 71 53 48 42 30 27 18 9 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAAACTACAAAATCCAAACAAA</pcr_primer_p1>
		<pcr_primer_p2>CAGATTCTATGAAAAGTTCTGTGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACAAACTACAAAATCCAAACAAATTTTTTTTAGTTTGAATCTCCTAAGAATTCTGGTGAAACTTTGAGATTTCTAGCTCTTCTAGAAGCTGAGATAGGACAACTTGAAGTTCATAAGAGACGCAGACAGCTAGAGTGTCTCGTTGTCTGCGTCTCTGACCTCCTAAACTTCAAATGACGCTATCTCGGTTCCTAGGTGAGCTAGAAATTAAATTCTTTCACTATTCTACACAGAACTTTTCATAGAATCTG</canonical_amplicon>
		<polymorphic_amplicon>ACAAACTACAAAATCCAAACAAATTTTTTTTAGTTTGAATCTCCTAAGAATTCTGGTGAAACTTTGAGATTTCTAGCTCTTCTAGAARCTGAGATAGGACAACTTGAAGTTCATAAGAGACGCAGACAGCTAGAGTGTCTCGTTGTCTGCGTCTCTGACCTCCTAAACTTCAAATGACGCTATCTCGGTTCCTAGGTGAGCTAGAAATTAAATTCTTTCACTATTCTACACAGAACTTTTCATAGAATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39137</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>254204</contig_pos>
        <strand>+</strand>
        <context>ATTTTAAAAG[A/T]GTTGTAAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATTAAACATTTCGTTGAAATCTGAACTTTTTTCGAGCATATTTTAAAAG</left_flank>
        <right_flank>GTTGTAAATCAAACAAGATCAGGAGGCTCTTAGGGATTATCTGGCCTCCG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAAACACTTCAGATTCCGACCACGGTTGGATTAGGTCATCCTTGTTACATCGTTCCAGCCAAGCTGGTTTCAGAACGGTGCAAGTGTTCTGAGAAATCGCTTGAGCCGTTTTGGGATGCGTTGGTTTTGGAGCTGTCGCAATGCATAATTGGGTAGAGGAGGCTGTAATTAATAATAGGGATAAAAAGACTACAAACTACAAAATCCAAACAAATTTTTTTTAGTTTGAATCTCCTAAGAATTCTGGTGAAACTTTGAGATTTCTAGCTCTTCTAGAAGCTGAGATAGGACAACTTGAAGTTCATAAGAGACGCAGACAGCTAGAGTGTCTCGTTGTCTGCGTCTCTGACCTCCTAAACTTCAAATGACGCTATCTCGGTTCCTAGGTGAGCTAGAAATTAAATTCTTTCACTATTCTACACAGAACTTTTCATAGAATCTGTTTCACATTAAACATTTCGTTGAAATCTGAACTTTTTTCGAGCATATTTTAAAAGAGTTGTAAATCAAACAAGATCAGGAGGCTCTTAGGGATTATCTGGCCTCCGTAGCCTACCACCACTTCAATTGATGACTTACACCCTCTAACAGACAGATGGCCTCTAGCTTTCGAAGCGATCAACACTTGTACTATTTATCATTGTCTTGTCCCTTCAGCAGGGTTAAAGAGACAGATAAGCTTAGGAATTGAAAAAATACATTTCAGGGGATTCTGAAAATCCTAAGAAATTCAAAAAATGCTTAGAAATCCAAAAAGTGCCCAAAACTCCAAAAATTCTTTTAAATTCCATAAATTCCTTACAATCCTTGAAATTCCATAAAACTTCAAAAATTCCAAAAAGTCCTTGAAACTCAAAAAGTCTTAAAAATTCCAAAAACTCACTGATCCCCTTGACCACGCTGGCTCCGAAATGCTTCAGAATCTCCTCACACTTTCGTCGAACGGCGTCCGACGTCCCTTGGAGTACTGCAACCTCGATTCCAGAAAGGCTAGACTC</canonical>
            <polymorphic>ATGAAACACTTCAGATTCCGACCACGGTTGGATTAGGTCATCCTTGTTACATCGTTCCAGCCAAGCTGGTTTCAGAACGGTGCAAGTGTTCTGAGAAATCGCTTGAGCCGTTTTGGGATGCGTTGGTTTTGGAGCTGTCGCAATGCATAATTGGGTAGAGGAGGCTGTAATTAATAATAGGGATAAAAAGACTACAAACTACAAAATCCAAACAAATTTTTTTTAGTTTGAATCTCCTAAGAATTCTGGTGAAACTTTGAGATTTCTAGCTCTTCTAGAAGCTGAGATAGGACAACTTGAAGTTCATAAGAGACGCAGACAGCTAGAGTGTCTCGTTGTCTGCGTCTCTGACCTCCTAAACTTCAAATGACGCTATCTCGGTTCCTAGGTGAGCTAGAAATTAAATTCTTTCACTATTCTACACAGAACTTTTCATAGAATCTGTTTCACATTAAACATTTCGTTGAAATCTGAACTTTTTTCGAGCATATTTTAAAAGWGTTGTAAATCAAACAAGATCAGGAGGCTCTTAGGGATTATCTGGCCTCCGTAGCCTACCACCACTTCAATTGATGACTTACACCCTCTAACAGACAGATGGCCTCTAGCTTTCGAAGCGATCAACACTTGTACTATTTATCATTGTCTTGTCCCTTCAGCAGGGTTAAAGAGACAGATAAGCTTAGGAATTGAAAAAATACATTTCAGGGGATTCTGAAAATCCTAAGAAATTCAAAAAATGCTTAGAAATCCAAAAAGTGCCCAAAACTCCAAAAATTCTTTTAAATTCCATAAATTCCTTACAATCCTTGAAATTCCATAAAACTTCAAAAATTCCAAAAAGTCCTTGAAACTCAAAAAGTCTTAAAAATTCCAAAAACTCACTGATCCCCTTGACCACGCTGGCTCCGAAATGCTTCAGAATCTCCTCACACTTTCGTCGAACGGCGTCCGACGTCCCTTGGAGTACTGCAACCTCGATTCCAGAAAGGCTAGACTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTTTTCATAGAATCTGTTTCA</pcr_primer_p1>
		<pcr_primer_p2>GTCTCTTTAACCCTGCTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAACTTTTCATAGAATCTGTTTCACATTAAACATTTCGTTGAAATCTGAACTTTTTTCGAGCATATTTTAAAAGAGTTGTAAATCAAACAAGATCAGGAGGCTCTTAGGGATTATCTGGCCTCCGTAGCCTACCACCACTTCAATTGATGACTTACACCCTCTAACAGACAGATGGCCTCTAGCTTTCGAAGCGATCAACACTTGTACTATTTATCATTGTCTTGTCCCTTCAGCAGGGTTAAAGAGAC</canonical_amplicon>
		<polymorphic_amplicon>GAACTTTTCATAGAATCTGTTTCACATTAAACATTTCGTTGAAATCTGAACTTTTTTCGAGCATATTTTAAAAGWGTTGTAAATCAAACAAGATCAGGAGGCTCTTAGGGATTATCTGGCCTCCGTAGCCTACCACCACTTCAATTGATGACTTACACCCTCTAACAGACAGATGGCCTCTAGCTTTCGAAGCGATCAACACTTGTACTATTTATCATTGTCTTGTCCCTTCAGCAGGGTTAAAGAGAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39138</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>254407</contig_pos>
        <strand>+</strand>
        <context>AAAAAATACA[A/T]TTCAGGGGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCTTCAGCAGGGTTAAAGAGACAGATAAGCTTAGGAATTGAAAAAATACA</left_flank>
        <right_flank>TTCAGGGGATTCTGAAAATCCTAAGAAATTCAAAAAATGCTTAGAAATCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCCAAACAAATTTTTTTTAGTTTGAATCTCCTAAGAATTCTGGTGAAACTTTGAGATTTCTAGCTCTTCTAGAAGCTGAGATAGGACAACTTGAAGTTCATAAGAGACGCAGACAGCTAGAGTGTCTCGTTGTCTGCGTCTCTGACCTCCTAAACTTCAAATGACGCTATCTCGGTTCCTAGGTGAGCTAGAAATTAAATTCTTTCACTATTCTACACAGAACTTTTCATAGAATCTGTTTCACATTAAACATTTCGTTGAAATCTGAACTTTTTTCGAGCATATTTTAAAAGAGTTGTAAATCAAACAAGATCAGGAGGCTCTTAGGGATTATCTGGCCTCCGTAGCCTACCACCACTTCAATTGATGACTTACACCCTCTAACAGACAGATGGCCTCTAGCTTTCGAAGCGATCAACACTTGTACTATTTATCATTGTCTTGTCCCTTCAGCAGGGTTAAAGAGACAGATAAGCTTAGGAATTGAAAAAATACATTTCAGGGGATTCTGAAAATCCTAAGAAATTCAAAAAATGCTTAGAAATCCAAAAAGTGCCCAAAACTCCAAAAATTCTTTTAAATTCCATAAATTCCTTACAATCCTTGAAATTCCATAAAACTTCAAAAATTCCAAAAAGTCCTTGAAACTCAAAAAGTCTTAAAAATTCCAAAAACTCACTGATCCCCTTGACCACGCTGGCTCCGAAATGCTTCAGAATCTCCTCACACTTTCGTCGAACGGCGTCCGACGTCCCTTGGAGTACTGCAACCTCGATTCCAGAAAGGCTAGACTCGAGTTTTGCACGTTTCAGCTGCACAGGGGCGGCTGGAAATTTTAGTTTTCTAAAAATTTCGTCTAAGATCTTTTCAGAAAGTTAAAATTCTTATAGTTCTAAAAAAGAGGAACCGACAGTTCTAAATCAATTTTCAAATTTGAAAAATAATGATTTTGAAGCGAGTTAAGACATTTTTAATATGGTGGCCTAGGAATCTAAAA</canonical>
            <polymorphic>AAATCCAAACAAATTTTTTTTAGTTTGAATCTCCTAAGAATTCTGGTGAAACTTTGAGATTTCTAGCTCTTCTAGAAGCTGAGATAGGACAACTTGAAGTTCATAAGAGACGCAGACAGCTAGAGTGTCTCGTTGTCTGCGTCTCTGACCTCCTAAACTTCAAATGACGCTATCTCGGTTCCTAGGTGAGCTAGAAATTAAATTCTTTCACTATTCTACACAGAACTTTTCATAGAATCTGTTTCACATTAAACATTTCGTTGAAATCTGAACTTTTTTCGAGCATATTTTAAAAGAGTTGTAAATCAAACAAGATCAGGAGGCTCTTAGGGATTATCTGGCCTCCGTAGCCTACCACCACTTCAATTGATGACTTACACCCTCTAACAGACAGATGGCCTCTAGCTTTCGAAGCGATCAACACTTGTACTATTTATCATTGTCTTGTCCCTTCAGCAGGGTTAAAGAGACAGATAAGCTTAGGAATTGAAAAAATACAWTTCAGGGGATTCTGAAAATCCTAAGAAATTCAAAAAATGCTTAGAAATCCAAAAAGTGCCCAAAACTCCAAAAATTCTTTTAAATTCCATAAATTCCTTACAATCCTTGAAATTCCATAAAACTTCAAAAATTCCAAAAAGTCCTTGAAACTCAAAAAGTCTTAAAAATTCCAAAAACTCACTGATCCCCTTGACCACGCTGGCTCCGAAATGCTTCAGAATCTCCTCACACTTTCGTCGAACGGCGTCCGACGTCCCTTGGAGTACTGCAACCTCGATTCCAGAAAGGCTAGACTCGAGTTTTGCACGTTTCAGCTGCACAGGGGCGGCTGGAAATTTTAGTTTTCTAAAAATTTCGTCTAAGATCTTTTCAGAAAGTTAAAATTCTTATAGTTCTAAAAAAGAGGAACCGACAGTTCTAAATCAATTTTCAAATTTGAAAAATAATGATTTTGAAGCGAGTTAAGACATTTTTAATATGGTGGCCTAGGAATCTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGCGATCAACACTTGTACTAT</pcr_primer_p1>
		<pcr_primer_p2>ACTTTTTGAGTTTCAAGGACTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGCGATCAACACTTGTACTATTTATCATTGTCTTGTCCCTTCAGCAGGGTTAAAGAGACAGATAAGCTTAGGAATTGAAAAAATACATTTCAGGGGATTCTGAAAATCCTAAGAAATTCAAAAAATGCTTAGAAATCCAAAAAGTGCCCAAAACTCCAAAAATTCTTTTAAATTCCATAAATTCCTTACAATCCTTGAAATTCCATAAAACTTCAAAAATTCCAAAAAGTCCTTGAAACTCAAAAAGT</canonical_amplicon>
		<polymorphic_amplicon>GAAGCGATCAACACTTGTACTATTTATCATTGTCTTGTCCCTTCAGCAGGGTTAAAGAGACAGATAAGCTTAGGAATTGAAAAAATACAWTTCAGGGGATTCTGAAAATCCTAAGAAATTCAAAAAATGCTTAGAAATCCAAAAAGTGCCCAAAACTCCAAAAATTCTTTTAAATTCCATAAATTCCTTACAATCCTTGAAATTCCATAAAACTTCAAAAATTCCAAAAAGTCCTTGAAACTCAAAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39141</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>305224</contig_pos>
        <strand>+</strand>
        <context>GATTTTTTTT[A/T]ATTTTGGTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACATGTTTTCCTTTTTTGTTTCTTGTTCAATTTTTGCCTTGATTTTTTTT</left_flank>
        <right_flank>ATTTTGGTATGTCTGACCCTTACAACCCTTGTTAGTCATTTTGATCAGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAGCCCCATAATTTCATTACCTATAGGTCCCATATGTTCAAGACCCATAAGTCCCATAGGTTAATTTTCCCTGTATCTTATCGGCTCATGGCTCTTAAGATCCAAATGTTCACGACCCATAAGCATCTTATGCGGTAGGTTTGTTGTCTCAAGATTAGGCCTTTTTTCCTCTGGCACCTAGATTCAGGATTACTGTATGTTTTCTAGAGTTAAAGGTTCTGTTAGGTCCTTTCCGGCAGCTTATTATTCAACTTTCTATTTCCTATCGGTCCTTACAGTACCCCTGACACTATTTGACATTATTTATCTCTCTTCTTTTGACACACGCTTAAATCGTTGCTTGGTTAGAGGGAACTTTTAAATATGGATGAAGAGTCCTTGCCCTGGGCAACTGATTTTCTCCAGGTTTAGGTACCCATCTGTCTGGGTACAGATTTTTTGTATCATACATGTTTTCCTTTTTTGTTTCTTGTTCAATTTTTGCCTTGATTTTTTTTAATTTTGGTATGTCTGACCCTTACAACCCTTGTTAGTCATTTTGATCAGTCTTGGTATGACCTGAATTTTCAGACTGGGCGTGGCCAGGGATCATAGAAATCTGACTGTCTGAAAAGACTGTCACTTTATTTGACACTCGATATTCGAAAACATAATTTCTGCAGGTTCTTACTGGAAACTTAGATTCTAGACCCTGATATTATGCTCTGATAGGTACGCTATGCGGTCATTAGCTCGGCCAAAGAGGGTGCCAACTTCAACCAAATTTATCTCAATTTCTATGAAAGATATCAAAAATCTGCCAATTGATAACAGGTTTGCCATAATAAGACCAACATTTTATCAATTGACCGTTTTTTGCATTCGTTTACAGGAACTGAGATAATTGAGCTCAAAGTTGGCACCCCTTCCGTAAGCGCTATTGGTCGGCAGCAGTGGTCGAGTAGCTCATATCTCAATTCCTATAAAAGATATCAAAAAGCTATTGACTATTAAAATGC</canonical>
            <polymorphic>TTTAGCCCCATAATTTCATTACCTATAGGTCCCATATGTTCAAGACCCATAAGTCCCATAGGTTAATTTTCCCTGTATCTTATCGGCTCATGGCTCTTAAGATCCAAATGTTCACGACCCATAAGCATCTTATGCGGTAGGTTTGTTGTCTCAAGATTAGGCCTTTTTTCCTCTGGCACCTAGATTCAGGATTACTGTATGTTTTCTAGAGTTAAAGGTTCTGTTAGGTCCTTTCCGGCAGCTTATTATTCAACTTTCTATTTCCTATCGGTCCTTACAGTACCCCTGACACTATTTGACATTATTTATCTCTCTTCTTTTGACACACGCTTAAATCGTTGCTTGGTTAGAGGGAACTTTTAAATATGGATGAAGAGTCCTTGCCCTGGGCAACTGATTTTCTCCAGGTTTAGGTACCCATCTGTCTGGGTACAGATTTTTTGTATCATACATGTTTTCCTTTTTTGTTTCTTGTTCAATTTTTGCCTTGATTTTTTTTWATTTTGGTATGTCTGACCCTTACAACCCTTGTTAGTCATTTTGATCAGTCTTGGTATGACCTGAATTTTCAGACTGGGCGTGGCCAGGGATCATAGAAATCTGACTGTCTGAAAAGACTGTCACTTTATTTGACACTCGATATTCGAAAACATAATTTCTGCAGGTTCTTACTGGAAACTTAGATTCTAGACCCTGATATTATGCTCTGATAGGTACGCTATGCGGTCATTAGCTCGGCCAAAGAGGGTGCCAACTTCAACCAAATTTATCTCAATTTCTATGAAAGATATCAAAAATCTGCCAATTGATAACAGGTTTGCCATAATAAGACCAACATTTTATCAATTGACCGTTTTTTGCATTCGTTTACAGGAACTGAGATAATTGAGCTCAAAGTTGGCACCCCTTCCGTAAGCGCTATTGGTCGGCAGCAGTGGTCGAGTAGCTCATATCTCAATTCCTATAAAAGATATCAAAAAGCTATTGACTATTAAAATGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>494 138 119 115 63 34 29 8</canonical_bands>
                <polymorphic_bands>632 119 115 63 34 29 8</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>413 110 90 73 64 53 44 41 39 30 22 11 10</canonical_bands>
                <polymorphic_bands>413 110 90 86 73 53 44 41 39 30 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGTTTAGGTACCCATCTGTCT</pcr_primer_p1>
		<pcr_primer_p2>TTATGTTTTCGAATATCGAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGTTTAGGTACCCATCTGTCTGGGTACAGATTTTTTGTATCATACATGTTTTCCTTTTTTGTTTCTTGTTCAATTTTTGCCTTGATTTTTTTTAATTTTGGTATGTCTGACCCTTACAACCCTTGTTAGTCATTTTGATCAGTCTTGGTATGACCTGAATTTTCAGACTGGGCGTGGCCAGGGATCATAGAAATCTGACTGTCTGAAAAGACTGTCACTTTATTTGACACTCGATATTCGAAAACATAA</canonical_amplicon>
		<polymorphic_amplicon>AGGTTTAGGTACCCATCTGTCTGGGTACAGATTTTTTGTATCATACATGTTTTCCTTTTTTGTTTCTTGTTCAATTTTTGCCTTGATTTTTTTTWATTTTGGTATGTCTGACCCTTACAACCCTTGTTAGTCATTTTGATCAGTCTTGGTATGACCTGAATTTTCAGACTGGGCGTGGCCAGGGATCATAGAAATCTGACTGTCTGAAAAGACTGTCACTTTATTTGACACTCGATATTCGAAAACATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39142</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>305242</contig_pos>
        <strand>+</strand>
        <context>TATGTCTGAC[C/G]CTTACAACCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTCTTGTTCAATTTTTGCCTTGATTTTTTTTAATTTTGGTATGTCTGAC</left_flank>
        <right_flank>CTTACAACCCTTGTTAGTCATTTTGATCAGTCTTGGTATGACCTGAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTACCTATAGGTCCCATATGTTCAAGACCCATAAGTCCCATAGGTTAATTTTCCCTGTATCTTATCGGCTCATGGCTCTTAAGATCCAAATGTTCACGACCCATAAGCATCTTATGCGGTAGGTTTGTTGTCTCAAGATTAGGCCTTTTTTCCTCTGGCACCTAGATTCAGGATTACTGTATGTTTTCTAGAGTTAAAGGTTCTGTTAGGTCCTTTCCGGCAGCTTATTATTCAACTTTCTATTTCCTATCGGTCCTTACAGTACCCCTGACACTATTTGACATTATTTATCTCTCTTCTTTTGACACACGCTTAAATCGTTGCTTGGTTAGAGGGAACTTTTAAATATGGATGAAGAGTCCTTGCCCTGGGCAACTGATTTTCTCCAGGTTTAGGTACCCATCTGTCTGGGTACAGATTTTTTGTATCATACATGTTTTCCTTTTTTGTTTCTTGTTCAATTTTTGCCTTGATTTTTTTTAATTTTGGTATGTCTGACCCTTACAACCCTTGTTAGTCATTTTGATCAGTCTTGGTATGACCTGAATTTTCAGACTGGGCGTGGCCAGGGATCATAGAAATCTGACTGTCTGAAAAGACTGTCACTTTATTTGACACTCGATATTCGAAAACATAATTTCTGCAGGTTCTTACTGGAAACTTAGATTCTAGACCCTGATATTATGCTCTGATAGGTACGCTATGCGGTCATTAGCTCGGCCAAAGAGGGTGCCAACTTCAACCAAATTTATCTCAATTTCTATGAAAGATATCAAAAATCTGCCAATTGATAACAGGTTTGCCATAATAAGACCAACATTTTATCAATTGACCGTTTTTTGCATTCGTTTACAGGAACTGAGATAATTGAGCTCAAAGTTGGCACCCCTTCCGTAAGCGCTATTGGTCGGCAGCAGTGGTCGAGTAGCTCATATCTCAATTCCTATAAAAGATATCAAAAAGCTATTGACTATTAAAATGCTTATCATGATATCACCAA</canonical>
            <polymorphic>TTACCTATAGGTCCCATATGTTCAAGACCCATAAGTCCCATAGGTTAATTTTCCCTGTATCTTATCGGCTCATGGCTCTTAAGATCCAAATGTTCACGACCCATAAGCATCTTATGCGGTAGGTTTGTTGTCTCAAGATTAGGCCTTTTTTCCTCTGGCACCTAGATTCAGGATTACTGTATGTTTTCTAGAGTTAAAGGTTCTGTTAGGTCCTTTCCGGCAGCTTATTATTCAACTTTCTATTTCCTATCGGTCCTTACAGTACCCCTGACACTATTTGACATTATTTATCTCTCTTCTTTTGACACACGCTTAAATCGTTGCTTGGTTAGAGGGAACTTTTAAATATGGATGAAGAGTCCTTGCCCTGGGCAACTGATTTTCTCCAGGTTTAGGTACCCATCTGTCTGGGTACAGATTTTTTGTATCATACATGTTTTCCTTTTTTGTTTCTTGTTCAATTTTTGCCTTGATTTTTTTTAATTTTGGTATGTCTGACSCTTACAACCCTTGTTAGTCATTTTGATCAGTCTTGGTATGACCTGAATTTTCAGACTGGGCGTGGCCAGGGATCATAGAAATCTGACTGTCTGAAAAGACTGTCACTTTATTTGACACTCGATATTCGAAAACATAATTTCTGCAGGTTCTTACTGGAAACTTAGATTCTAGACCCTGATATTATGCTCTGATAGGTACGCTATGCGGTCATTAGCTCGGCCAAAGAGGGTGCCAACTTCAACCAAATTTATCTCAATTTCTATGAAAGATATCAAAAATCTGCCAATTGATAACAGGTTTGCCATAATAAGACCAACATTTTATCAATTGACCGTTTTTTGCATTCGTTTACAGGAACTGAGATAATTGAGCTCAAAGTTGGCACCCCTTCCGTAAGCGCTATTGGTCGGCAGCAGTGGTCGAGTAGCTCATATCTCAATTCCTATAAAAGATATCAAAAAGCTATTGACTATTAAAATGCTTATCATGATATCACCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGTTTAGGTACCCATCTGTCT</pcr_primer_p1>
		<pcr_primer_p2>TTATGTTTTCGAATATCGAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGTTTAGGTACCCATCTGTCTGGGTACAGATTTTTTGTATCATACATGTTTTCCTTTTTTGTTTCTTGTTCAATTTTTGCCTTGATTTTTTTTAATTTTGGTATGTCTGACCCTTACAACCCTTGTTAGTCATTTTGATCAGTCTTGGTATGACCTGAATTTTCAGACTGGGCGTGGCCAGGGATCATAGAAATCTGACTGTCTGAAAAGACTGTCACTTTATTTGACACTCGATATTCGAAAACATAA</canonical_amplicon>
		<polymorphic_amplicon>AGGTTTAGGTACCCATCTGTCTGGGTACAGATTTTTTGTATCATACATGTTTTCCTTTTTTGTTTCTTGTTCAATTTTTGCCTTGATTTTTTTTAATTTTGGTATGTCTGACSCTTACAACCCTTGTTAGTCATTTTGATCAGTCTTGGTATGACCTGAATTTTCAGACTGGGCGTGGCCAGGGATCATAGAAATCTGACTGTCTGAAAAGACTGTCACTTTATTTGACACTCGATATTCGAAAACATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39143</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>305314</contig_pos>
        <strand>+</strand>
        <context>GTGGCCAGGG[A/T]TCATAGAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTGATCAGTCTTGGTATGACCTGAATTTTCAGACTGGGCGTGGCCAGGG</left_flank>
        <right_flank>TCATAGAAATCTGACTGTCTGAAAAGACTGTCACTTTATTTGACACTCGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGCTCTTAAGATCCAAATGTTCACGACCCATAAGCATCTTATGCGGTAGGTTTGTTGTCTCAAGATTAGGCCTTTTTTCCTCTGGCACCTAGATTCAGGATTACTGTATGTTTTCTAGAGTTAAAGGTTCTGTTAGGTCCTTTCCGGCAGCTTATTATTCAACTTTCTATTTCCTATCGGTCCTTACAGTACCCCTGACACTATTTGACATTATTTATCTCTCTTCTTTTGACACACGCTTAAATCGTTGCTTGGTTAGAGGGAACTTTTAAATATGGATGAAGAGTCCTTGCCCTGGGCAACTGATTTTCTCCAGGTTTAGGTACCCATCTGTCTGGGTACAGATTTTTTGTATCATACATGTTTTCCTTTTTTGTTTCTTGTTCAATTTTTGCCTTGATTTTTTTTAATTTTGGTATGTCTGACCCTTACAACCCTTGTTAGTCATTTTGATCAGTCTTGGTATGACCTGAATTTTCAGACTGGGCGTGGCCAGGGATCATAGAAATCTGACTGTCTGAAAAGACTGTCACTTTATTTGACACTCGATATTCGAAAACATAATTTCTGCAGGTTCTTACTGGAAACTTAGATTCTAGACCCTGATATTATGCTCTGATAGGTACGCTATGCGGTCATTAGCTCGGCCAAAGAGGGTGCCAACTTCAACCAAATTTATCTCAATTTCTATGAAAGATATCAAAAATCTGCCAATTGATAACAGGTTTGCCATAATAAGACCAACATTTTATCAATTGACCGTTTTTTGCATTCGTTTACAGGAACTGAGATAATTGAGCTCAAAGTTGGCACCCCTTCCGTAAGCGCTATTGGTCGGCAGCAGTGGTCGAGTAGCTCATATCTCAATTCCTATAAAAGATATCAAAAAGCTATTGACTATTAAAATGCTTATCATGATATCACCAACATTTTATCAGTTGAAAGATTCTTGATATCTCTTACGGAAACTGAGATAATTGAGCTCAAAGTTCAAGAATC</canonical>
            <polymorphic>TGGCTCTTAAGATCCAAATGTTCACGACCCATAAGCATCTTATGCGGTAGGTTTGTTGTCTCAAGATTAGGCCTTTTTTCCTCTGGCACCTAGATTCAGGATTACTGTATGTTTTCTAGAGTTAAAGGTTCTGTTAGGTCCTTTCCGGCAGCTTATTATTCAACTTTCTATTTCCTATCGGTCCTTACAGTACCCCTGACACTATTTGACATTATTTATCTCTCTTCTTTTGACACACGCTTAAATCGTTGCTTGGTTAGAGGGAACTTTTAAATATGGATGAAGAGTCCTTGCCCTGGGCAACTGATTTTCTCCAGGTTTAGGTACCCATCTGTCTGGGTACAGATTTTTTGTATCATACATGTTTTCCTTTTTTGTTTCTTGTTCAATTTTTGCCTTGATTTTTTTTAATTTTGGTATGTCTGACCCTTACAACCCTTGTTAGTCATTTTGATCAGTCTTGGTATGACCTGAATTTTCAGACTGGGCGTGGCCAGGGWTCATAGAAATCTGACTGTCTGAAAAGACTGTCACTTTATTTGACACTCGATATTCGAAAACATAATTTCTGCAGGTTCTTACTGGAAACTTAGATTCTAGACCCTGATATTATGCTCTGATAGGTACGCTATGCGGTCATTAGCTCGGCCAAAGAGGGTGCCAACTTCAACCAAATTTATCTCAATTTCTATGAAAGATATCAAAAATCTGCCAATTGATAACAGGTTTGCCATAATAAGACCAACATTTTATCAATTGACCGTTTTTTGCATTCGTTTACAGGAACTGAGATAATTGAGCTCAAAGTTGGCACCCCTTCCGTAAGCGCTATTGGTCGGCAGCAGTGGTCGAGTAGCTCATATCTCAATTCCTATAAAAGATATCAAAAAGCTATTGACTATTAAAATGCTTATCATGATATCACCAACATTTTATCAGTTGAAAGATTCTTGATATCTCTTACGGAAACTGAGATAATTGAGCTCAAAGTTCAAGAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>502 442 46 10</canonical_bands>
                <polymorphic_bands>548 442 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGTTTAGGTACCCATCTGTCT</pcr_primer_p1>
		<pcr_primer_p2>TTATGTTTTCGAATATCGAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGGTTTAGGTACCCATCTGTCTGGGTACAGATTTTTTGTATCATACATGTTTTCCTTTTTTGTTTCTTGTTCAATTTTTGCCTTGATTTTTTTTAATTTTGGTATGTCTGACCCTTACAACCCTTGTTAGTCATTTTGATCAGTCTTGGTATGACCTGAATTTTCAGACTGGGCGTGGCCAGGGATCATAGAAATCTGACTGTCTGAAAAGACTGTCACTTTATTTGACACTCGATATTCGAAAACATAA</canonical_amplicon>
		<polymorphic_amplicon>AGGTTTAGGTACCCATCTGTCTGGGTACAGATTTTTTGTATCATACATGTTTTCCTTTTTTGTTTCTTGTTCAATTTTTGCCTTGATTTTTTTTAATTTTGGTATGTCTGACCCTTACAACCCTTGTTAGTCATTTTGATCAGTCTTGGTATGACCTGAATTTTCAGACTGGGCGTGGCCAGGGWTCATAGAAATCTGACTGTCTGAAAAGACTGTCACTTTATTTGACACTCGATATTCGAAAACATAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39144</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>305331</contig_pos>
        <strand>+</strand>
        <context>AAATCTGACT[A/G]TCTGAAAAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGACCTGAATTTTCAGACTGGGCGTGGCCAGGGATCATAGAAATCTGACT</left_flank>
        <right_flank>TCTGAAAAGACTGTCACTTTATTTGACACTCGATATTCGAAAACATAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTTCACGACCCATAAGCATCTTATGCGGTAGGTTTGTTGTCTCAAGATTAGGCCTTTTTTCCTCTGGCACCTAGATTCAGGATTACTGTATGTTTTCTAGAGTTAAAGGTTCTGTTAGGTCCTTTCCGGCAGCTTATTATTCAACTTTCTATTTCCTATCGGTCCTTACAGTACCCCTGACACTATTTGACATTATTTATCTCTCTTCTTTTGACACACGCTTAAATCGTTGCTTGGTTAGAGGGAACTTTTAAATATGGATGAAGAGTCCTTGCCCTGGGCAACTGATTTTCTCCAGGTTTAGGTACCCATCTGTCTGGGTACAGATTTTTTGTATCATACATGTTTTCCTTTTTTGTTTCTTGTTCAATTTTTGCCTTGATTTTTTTTAATTTTGGTATGTCTGACCCTTACAACCCTTGTTAGTCATTTTGATCAGTCTTGGTATGACCTGAATTTTCAGACTGGGCGTGGCCAGGGATCATAGAAATCTGACTGTCTGAAAAGACTGTCACTTTATTTGACACTCGATATTCGAAAACATAATTTCTGCAGGTTCTTACTGGAAACTTAGATTCTAGACCCTGATATTATGCTCTGATAGGTACGCTATGCGGTCATTAGCTCGGCCAAAGAGGGTGCCAACTTCAACCAAATTTATCTCAATTTCTATGAAAGATATCAAAAATCTGCCAATTGATAACAGGTTTGCCATAATAAGACCAACATTTTATCAATTGACCGTTTTTTGCATTCGTTTACAGGAACTGAGATAATTGAGCTCAAAGTTGGCACCCCTTCCGTAAGCGCTATTGGTCGGCAGCAGTGGTCGAGTAGCTCATATCTCAATTCCTATAAAAGATATCAAAAAGCTATTGACTATTAAAATGCTTATCATGATATCACCAACATTTTATCAGTTGAAAGATTCTTGATATCTCTTACGGAAACTGAGATAATTGAGCTCAAAGTTCAAGAATCTCGAATCTCTAGTTTCG</canonical>
            <polymorphic>ATGTTCACGACCCATAAGCATCTTATGCGGTAGGTTTGTTGTCTCAAGATTAGGCCTTTTTTCCTCTGGCACCTAGATTCAGGATTACTGTATGTTTTCTAGAGTTAAAGGTTCTGTTAGGTCCTTTCCGGCAGCTTATTATTCAACTTTCTATTTCCTATCGGTCCTTACAGTACCCCTGACACTATTTGACATTATTTATCTCTCTTCTTTTGACACACGCTTAAATCGTTGCTTGGTTAGAGGGAACTTTTAAATATGGATGAAGAGTCCTTGCCCTGGGCAACTGATTTTCTCCAGGTTTAGGTACCCATCTGTCTGGGTACAGATTTTTTGTATCATACATGTTTTCCTTTTTTGTTTCTTGTTCAATTTTTGCCTTGATTTTTTTTAATTTTGGTATGTCTGACCCTTACAACCCTTGTTAGTCATTTTGATCAGTCTTGGTATGACCTGAATTTTCAGACTGGGCGTGGCCAGGGATCATAGAAATCTGACTRTCTGAAAAGACTGTCACTTTATTTGACACTCGATATTCGAAAACATAATTTCTGCAGGTTCTTACTGGAAACTTAGATTCTAGACCCTGATATTATGCTCTGATAGGTACGCTATGCGGTCATTAGCTCGGCCAAAGAGGGTGCCAACTTCAACCAAATTTATCTCAATTTCTATGAAAGATATCAAAAATCTGCCAATTGATAACAGGTTTGCCATAATAAGACCAACATTTTATCAATTGACCGTTTTTTGCATTCGTTTACAGGAACTGAGATAATTGAGCTCAAAGTTGGCACCCCTTCCGTAAGCGCTATTGGTCGGCAGCAGTGGTCGAGTAGCTCATATCTCAATTCCTATAAAAGATATCAAAAAGCTATTGACTATTAAAATGCTTATCATGATATCACCAACATTTTATCAGTTGAAAGATTCTTGATATCTCTTACGGAAACTGAGATAATTGAGCTCAAAGTTCAAGAATCTCGAATCTCTAGTTTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>327 255 233 89 83 13</canonical_bands>
                <polymorphic_bands>340 255 233 89 83</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTGTCTGGGTACAGATTTTT</pcr_primer_p1>
		<pcr_primer_p2>TAAGAACCTGCAGAAATTATGTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATCTGTCTGGGTACAGATTTTTTGTATCATACATGTTTTCCTTTTTTGTTTCTTGTTCAATTTTTGCCTTGATTTTTTTTAATTTTGGTATGTCTGACCCTTACAACCCTTGTTAGTCATTTTGATCAGTCTTGGTATGACCTGAATTTTCAGACTGGGCGTGGCCAGGGATCATAGAAATCTGACTGTCTGAAAAGACTGTCACTTTATTTGACACTCGATATTCGAAAACATAATTTCTGCAGGTTCTTA</canonical_amplicon>
		<polymorphic_amplicon>ATCTGTCTGGGTACAGATTTTTTGTATCATACATGTTTTCCTTTTTTGTTTCTTGTTCAATTTTTGCCTTGATTTTTTTTAATTTTGGTATGTCTGACCCTTACAACCCTTGTTAGTCATTTTGATCAGTCTTGGTATGACCTGAATTTTCAGACTGGGCGTGGCCAGGGATCATAGAAATCTGACTRTCTGAAAAGACTGTCACTTTATTTGACACTCGATATTCGAAAACATAATTTCTGCAGGTTCTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39145</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>314374</contig_pos>
        <strand></strand>
        <context>ttttgtagat[A/T]taattttctt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GACAGAACTCGAATGTCAACTATAGTTGAATTATATATCATTTTGTAGAT</left_flank>
        <right_flank>TAATTTTCTTCTGCATTTCTCATTTTAGCCCCAAAAGAAAATCAAAGTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTTTGACTCACTATCAGAGATGGTGAAAAGATGGGTTGGCAAAATCGACCACCCCGTCTGCGCCGATCCGAGCCGCTATTGAAACTTGATATTTCTGTACAAATTTAAAACTAAGTAATATAATTTAATCAGATCTACAAATGAATATAAAACTCGACTATACTTAAATGCTCAGTTTTGGACCAGAGGCCGCAAACCATTTCAGAGCTGTTGTCGGTGGTCGATTTTGCCTACCCGTCATTTCACCGTTTCTGAGTTAATACTCGGCTATTACATATAGTTGATTTTTATATCATTTTGTAGACCTTGTTAAGATCTACATTTTACTATTTAATTCCTACAGAAATTCTAAGTTTGAGCTGAGTTATGAGTTGTCGCGTATTAGGGCGCAATTGGCGCTCACAAGGTCGACCGATTTTGCCTACCCGCCTTTCCACCATCTCTGAGACAGAACTCGAATGTCAACTATAGTTGAATTATATATCATTTTGTAGATATAATTTTCTTCTGCATTTCTCATTTTAGCCCCAAAAGAAAATCAAAGTTTGAACCGAGTTACGTCCTTGCAAACCAACTAACCACCATGCTTACCTCCCCACTCGGCCCAAAAGCCTTGGGGCCAAGAACGCTGTGTGCCACACTAGCACCACTAGCCCAGAACACTCTCTACCCCGTCTCTTAACTTTTAAAGAAGTAGGTCTCGTCATCGAAGCACCAAACCAAGCCGAAGACCCAACGACACCCGATCCAAACACCATCAAATGCGGTAACGGACTCTGCCATCTGAACCTCGGAGAAGTCTGTGTGGGCGGAGCCACCTGCGCTTGCAGACCAGGAGAAAGCCGTGATAATGATAAGGAGAAGTGTGTGCCAGTGACATCGATACCTTTGGTTGTGCGAGTGATGGAGTATGATGGAGAACCAATTCAGTATAGAACCGATTACTCGAAACCAGACACTCCGGCTCATGTGGAAATTGTGGATGCTGTTAAGAAGG</canonical>
            <polymorphic>GAATTTTGACTCACTATCAGAGATGGTGAAAAGATGGGTTGGCAAAATCGACCACCCCGTCTGCGCCGATCCGAGCCGCTATTGAAACTTGATATTTCTGTACAAATTTAAAACTAAGTAATATAATTTAATCAGATCTACAAATGAATATAAAACTCGACTATACTTAAATGCTCAGTTTTGGACCAGAGGCCGCAAACCATTTCAGAGCTGTTGTCGGTGGTCGATTTTGCCTACCCGTCATTTCACCGTTTCTGAGTTAATACTCGGCTATTACATATAGTTGATTTTTATATCATTTTGTAGACCTTGTTAAGATCTACATTTTACTATTTAATTCCTACAGAAATTCTAAGTTTGAGCTGAGTTATGAGTTGTCGCGTATTAGGGCGCAATTGGCGCTCACAAGGTCGACCGATTTTGCCTACCCGCCTTTCCACCATCTCTGAGACAGAACTCGAATGTCAACTATAGTTGAATTATATATCATTTTGTAGATWTAATTTTCTTCTGCATTTCTCATTTTAGCCCCAAAAGAAAATCAAAGTTTGAACCGAGTTACGTCCTTGCAAACCAACTAACCACCATGCTTACCTCCCCACTCGGCCCAAAAGCCTTGGGGCCAAGAACGCTGTGTGCCACACTAGCACCACTAGCCCAGAACACTCTCTACCCCGTCTCTTAACTTTTAAAGAAGTAGGTCTCGTCATCGAAGCACCAAACCAAGCCGAAGACCCAACGACACCCGATCCAAACACCATCAAATGCGGTAACGGACTCTGCCATCTGAACCTCGGAGAAGTCTGTGTGGGCGGAGCCACCTGCGCTTGCAGACCAGGAGAAAGCCGTGATAATGATAAGGAGAAGTGTGTGCCAGTGACATCGATACCTTTGGTTGTGCGAGTGATGGAGTATGATGGAGAACCAATTCAGTATAGAACCGATTACTCGAAACCAGACACTCCGGCTCATGTGGAAATTGTGGATGCTGTTAAGAAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCATTTCAGAGCTGTTGTC</pcr_primer_p1>
		<pcr_primer_p2>AGGTAAGCATGGTGGTTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>398</pcr_amplicon_size>
		<canonical_amplicon>ACCATTTCAGAGCTGTTGTCGGTGGTCGATTTTGCCTACCCGTCATTTCACCGTTTCTGAGTTAATACTCGGCTATTACATATAGTTGATTTTTATATCATTTTGTAGACCTTGTTAAGATCTACATTTTACTATTTAATTCCTACAGAAATTCTAAGTTTGAGCTGAGTTATGAGTTGTCGCGTATTAGGGCGCAATTGGCGCTCACAAGGTCGACCGATTTTGCCTACCCGCCTTTCCACCATCTCTGAGACAGAACTCGAATGTCAACTATAGTTGAATTATATATCATTTTGTAGATATAATTTTCTTCTGCATTTCTCATTTTAGCCCCAAAAGAAAATCAAAGTTTGAACCGAGTTACGTCCTTGCAAACCAACTAACCACCATGCTTACCT</canonical_amplicon>
		<polymorphic_amplicon>ACCATTTCAGAGCTGTTGTCGGTGGTCGATTTTGCCTACCCGTCATTTCACCGTTTCTGAGTTAATACTCGGCTATTACATATAGTTGATTTTTATATCATTTTGTAGACCTTGTTAAGATCTACATTTTACTATTTAATTCCTACAGAAATTCTAAGTTTGAGCTGAGTTATGAGTTGTCGCGTATTAGGGCGCAATTGGCGCTCACAAGGTCGACCGATTTTGCCTACCCGCCTTTCCACCATCTCTGAGACAGAACTCGAATGTCAACTATAGTTGAATTATATATCATTTTGTAGATWTAATTTTCTTCTGCATTTCTCATTTTAGCCCCAAAAGAAAATCAAAGTTTGAACCGAGTTACGTCCTTGCAAACCAACTAACCACCATGCTTACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39146</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>314394</contig_pos>
        <strand></strand>
        <context>tctgcatttc[T/G]cattttagcc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TATAGTTGAATTATATATCATTTTGTAGATATAATTTTCTTCTGCATTTC</left_flank>
        <right_flank>CATTTTAGCCCCAAAAGAAAATCAAAGTTTGAACCGAGTTACGTCCTTGC</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGATGGTGAAAAGATGGGTTGGCAAAATCGACCACCCCGTCTGCGCCGATCCGAGCCGCTATTGAAACTTGATATTTCTGTACAAATTTAAAACTAAGTAATATAATTTAATCAGATCTACAAATGAATATAAAACTCGACTATACTTAAATGCTCAGTTTTGGACCAGAGGCCGCAAACCATTTCAGAGCTGTTGTCGGTGGTCGATTTTGCCTACCCGTCATTTCACCGTTTCTGAGTTAATACTCGGCTATTACATATAGTTGATTTTTATATCATTTTGTAGACCTTGTTAAGATCTACATTTTACTATTTAATTCCTACAGAAATTCTAAGTTTGAGCTGAGTTATGAGTTGTCGCGTATTAGGGCGCAATTGGCGCTCACAAGGTCGACCGATTTTGCCTACCCGCCTTTCCACCATCTCTGAGACAGAACTCGAATGTCAACTATAGTTGAATTATATATCATTTTGTAGATATAATTTTCTTCTGCATTTCTCATTTTAGCCCCAAAAGAAAATCAAAGTTTGAACCGAGTTACGTCCTTGCAAACCAACTAACCACCATGCTTACCTCCCCACTCGGCCCAAAAGCCTTGGGGCCAAGAACGCTGTGTGCCACACTAGCACCACTAGCCCAGAACACTCTCTACCCCGTCTCTTAACTTTTAAAGAAGTAGGTCTCGTCATCGAAGCACCAAACCAAGCCGAAGACCCAACGACACCCGATCCAAACACCATCAAATGCGGTAACGGACTCTGCCATCTGAACCTCGGAGAAGTCTGTGTGGGCGGAGCCACCTGCGCTTGCAGACCAGGAGAAAGCCGTGATAATGATAAGGAGAAGTGTGTGCCAGTGACATCGATACCTTTGGTTGTGCGAGTGATGGAGTATGATGGAGAACCAATTCAGTATAGAACCGATTACTCGAAACCAGACACTCCGGCTCATGTGGAAATTGTGGATGCTGTTAAGAAGGTATTTATTTTTGATTCTGGT</canonical>
            <polymorphic>AGATGGTGAAAAGATGGGTTGGCAAAATCGACCACCCCGTCTGCGCCGATCCGAGCCGCTATTGAAACTTGATATTTCTGTACAAATTTAAAACTAAGTAATATAATTTAATCAGATCTACAAATGAATATAAAACTCGACTATACTTAAATGCTCAGTTTTGGACCAGAGGCCGCAAACCATTTCAGAGCTGTTGTCGGTGGTCGATTTTGCCTACCCGTCATTTCACCGTTTCTGAGTTAATACTCGGCTATTACATATAGTTGATTTTTATATCATTTTGTAGACCTTGTTAAGATCTACATTTTACTATTTAATTCCTACAGAAATTCTAAGTTTGAGCTGAGTTATGAGTTGTCGCGTATTAGGGCGCAATTGGCGCTCACAAGGTCGACCGATTTTGCCTACCCGCCTTTCCACCATCTCTGAGACAGAACTCGAATGTCAACTATAGTTGAATTATATATCATTTTGTAGATATAATTTTCTTCTGCATTTCKCATTTTAGCCCCAAAAGAAAATCAAAGTTTGAACCGAGTTACGTCCTTGCAAACCAACTAACCACCATGCTTACCTCCCCACTCGGCCCAAAAGCCTTGGGGCCAAGAACGCTGTGTGCCACACTAGCACCACTAGCCCAGAACACTCTCTACCCCGTCTCTTAACTTTTAAAGAAGTAGGTCTCGTCATCGAAGCACCAAACCAAGCCGAAGACCCAACGACACCCGATCCAAACACCATCAAATGCGGTAACGGACTCTGCCATCTGAACCTCGGAGAAGTCTGTGTGGGCGGAGCCACCTGCGCTTGCAGACCAGGAGAAAGCCGTGATAATGATAAGGAGAAGTGTGTGCCAGTGACATCGATACCTTTGGTTGTGCGAGTGATGGAGTATGATGGAGAACCAATTCAGTATAGAACCGATTACTCGAAACCAGACACTCCGGCTCATGTGGAAATTGTGGATGCTGTTAAGAAGGTATTTATTTTTGATTCTGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCATTTCAGAGCTGTTGTC</pcr_primer_p1>
		<pcr_primer_p2>AGGTAAGCATGGTGGTTAGTT</pcr_primer_p2>
		<pcr_amplicon_size>398</pcr_amplicon_size>
		<canonical_amplicon>ACCATTTCAGAGCTGTTGTCGGTGGTCGATTTTGCCTACCCGTCATTTCACCGTTTCTGAGTTAATACTCGGCTATTACATATAGTTGATTTTTATATCATTTTGTAGACCTTGTTAAGATCTACATTTTACTATTTAATTCCTACAGAAATTCTAAGTTTGAGCTGAGTTATGAGTTGTCGCGTATTAGGGCGCAATTGGCGCTCACAAGGTCGACCGATTTTGCCTACCCGCCTTTCCACCATCTCTGAGACAGAACTCGAATGTCAACTATAGTTGAATTATATATCATTTTGTAGATATAATTTTCTTCTGCATTTCTCATTTTAGCCCCAAAAGAAAATCAAAGTTTGAACCGAGTTACGTCCTTGCAAACCAACTAACCACCATGCTTACCT</canonical_amplicon>
		<polymorphic_amplicon>ACCATTTCAGAGCTGTTGTCGGTGGTCGATTTTGCCTACCCGTCATTTCACCGTTTCTGAGTTAATACTCGGCTATTACATATAGTTGATTTTTATATCATTTTGTAGACCTTGTTAAGATCTACATTTTACTATTTAATTCCTACAGAAATTCTAAGTTTGAGCTGAGTTATGAGTTGTCGCGTATTAGGGCGCAATTGGCGCTCACAAGGTCGACCGATTTTGCCTACCCGCCTTTCCACCATCTCTGAGACAGAACTCGAATGTCAACTATAGTTGAATTATATATCATTTTGTAGATATAATTTTCTTCTGCATTTCKCATTTTAGCCCCAAAAGAAAATCAAAGTTTGAACCGAGTTACGTCCTTGCAAACCAACTAACCACCATGCTTACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39147</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>314436</contig_pos>
        <strand></strand>
        <context>aaccgagtta[C/T]gtcCTTGCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGCATTTCTCATTTTAGCCCCAAAAGAAAATCAAAGTTTGAACCGAGTTA</left_flank>
        <right_flank>GTCCTTGCAAACCAACTAACCACCATGCTTACCTCCCCACTCGGCCCAAA</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGCCGATCCGAGCCGCTATTGAAACTTGATATTTCTGTACAAATTTAAAACTAAGTAATATAATTTAATCAGATCTACAAATGAATATAAAACTCGACTATACTTAAATGCTCAGTTTTGGACCAGAGGCCGCAAACCATTTCAGAGCTGTTGTCGGTGGTCGATTTTGCCTACCCGTCATTTCACCGTTTCTGAGTTAATACTCGGCTATTACATATAGTTGATTTTTATATCATTTTGTAGACCTTGTTAAGATCTACATTTTACTATTTAATTCCTACAGAAATTCTAAGTTTGAGCTGAGTTATGAGTTGTCGCGTATTAGGGCGCAATTGGCGCTCACAAGGTCGACCGATTTTGCCTACCCGCCTTTCCACCATCTCTGAGACAGAACTCGAATGTCAACTATAGTTGAATTATATATCATTTTGTAGATATAATTTTCTTCTGCATTTCTCATTTTAGCCCCAAAAGAAAATCAAAGTTTGAACCGAGTTACGTCCTTGCAAACCAACTAACCACCATGCTTACCTCCCCACTCGGCCCAAAAGCCTTGGGGCCAAGAACGCTGTGTGCCACACTAGCACCACTAGCCCAGAACACTCTCTACCCCGTCTCTTAACTTTTAAAGAAGTAGGTCTCGTCATCGAAGCACCAAACCAAGCCGAAGACCCAACGACACCCGATCCAAACACCATCAAATGCGGTAACGGACTCTGCCATCTGAACCTCGGAGAAGTCTGTGTGGGCGGAGCCACCTGCGCTTGCAGACCAGGAGAAAGCCGTGATAATGATAAGGAGAAGTGTGTGCCAGTGACATCGATACCTTTGGTTGTGCGAGTGATGGAGTATGATGGAGAACCAATTCAGTATAGAACCGATTACTCGAAACCAGACACTCCGGCTCATGTGGAAATTGTGGATGCTGTTAAGAAGGTATTTATTTTTGATTCTGGTTTTCCTATTTTCATTGATAACTTTCAGAGCGTTGGAAAGATC</canonical>
            <polymorphic>GCGCCGATCCGAGCCGCTATTGAAACTTGATATTTCTGTACAAATTTAAAACTAAGTAATATAATTTAATCAGATCTACAAATGAATATAAAACTCGACTATACTTAAATGCTCAGTTTTGGACCAGAGGCCGCAAACCATTTCAGAGCTGTTGTCGGTGGTCGATTTTGCCTACCCGTCATTTCACCGTTTCTGAGTTAATACTCGGCTATTACATATAGTTGATTTTTATATCATTTTGTAGACCTTGTTAAGATCTACATTTTACTATTTAATTCCTACAGAAATTCTAAGTTTGAGCTGAGTTATGAGTTGTCGCGTATTAGGGCGCAATTGGCGCTCACAAGGTCGACCGATTTTGCCTACCCGCCTTTCCACCATCTCTGAGACAGAACTCGAATGTCAACTATAGTTGAATTATATATCATTTTGTAGATATAATTTTCTTCTGCATTTCTCATTTTAGCCCCAAAAGAAAATCAAAGTTTGAACCGAGTTAYGTCCTTGCAAACCAACTAACCACCATGCTTACCTCCCCACTCGGCCCAAAAGCCTTGGGGCCAAGAACGCTGTGTGCCACACTAGCACCACTAGCCCAGAACACTCTCTACCCCGTCTCTTAACTTTTAAAGAAGTAGGTCTCGTCATCGAAGCACCAAACCAAGCCGAAGACCCAACGACACCCGATCCAAACACCATCAAATGCGGTAACGGACTCTGCCATCTGAACCTCGGAGAAGTCTGTGTGGGCGGAGCCACCTGCGCTTGCAGACCAGGAGAAAGCCGTGATAATGATAAGGAGAAGTGTGTGCCAGTGACATCGATACCTTTGGTTGTGCGAGTGATGGAGTATGATGGAGAACCAATTCAGTATAGAACCGATTACTCGAAACCAGACACTCCGGCTCATGTGGAAATTGTGGATGCTGTTAAGAAGGTATTTATTTTTGATTCTGGTTTTCCTATTTTCATTGATAACTTTCAGAGCGTTGGAAAGATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>495 212 186 107</canonical_bands>
                <polymorphic_bands>707 186 107</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCATTTCAGAGCTGTTGTC</pcr_primer_p1>
		<pcr_primer_p2>GTAGAGAGTGTTCTGGGCTAGT</pcr_primer_p2>
		<pcr_amplicon_size>475</pcr_amplicon_size>
		<canonical_amplicon>ACCATTTCAGAGCTGTTGTCGGTGGTCGATTTTGCCTACCCGTCATTTCACCGTTTCTGAGTTAATACTCGGCTATTACATATAGTTGATTTTTATATCATTTTGTAGACCTTGTTAAGATCTACATTTTACTATTTAATTCCTACAGAAATTCTAAGTTTGAGCTGAGTTATGAGTTGTCGCGTATTAGGGCGCAATTGGCGCTCACAAGGTCGACCGATTTTGCCTACCCGCCTTTCCACCATCTCTGAGACAGAACTCGAATGTCAACTATAGTTGAATTATATATCATTTTGTAGATATAATTTTCTTCTGCATTTCTCATTTTAGCCCCAAAAGAAAATCAAAGTTTGAACCGAGTTACGTCCTTGCAAACCAACTAACCACCATGCTTACCTCCCCACTCGGCCCAAAAGCCTTGGGGCCAAGAACGCTGTGTGCCACACTAGCACCACTAGCCCAGAACACTCTCTAC</canonical_amplicon>
		<polymorphic_amplicon>ACCATTTCAGAGCTGTTGTCGGTGGTCGATTTTGCCTACCCGTCATTTCACCGTTTCTGAGTTAATACTCGGCTATTACATATAGTTGATTTTTATATCATTTTGTAGACCTTGTTAAGATCTACATTTTACTATTTAATTCCTACAGAAATTCTAAGTTTGAGCTGAGTTATGAGTTGTCGCGTATTAGGGCGCAATTGGCGCTCACAAGGTCGACCGATTTTGCCTACCCGCCTTTCCACCATCTCTGAGACAGAACTCGAATGTCAACTATAGTTGAATTATATATCATTTTGTAGATATAATTTTCTTCTGCATTTCTCATTTTAGCCCCAAAAGAAAATCAAAGTTTGAACCGAGTTAYGTCCTTGCAAACCAACTAACCACCATGCTTACCTCCCCACTCGGCCCAAAAGCCTTGGGGCCAAGAACGCTGTGTGCCACACTAGCACCACTAGCCCAGAACACTCTCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39148</snp_id>
        <super_contig>c013500956.Contig4</super_contig>
        <contig_pos>314914</contig_pos>
        <strand>+</strand>
        <context>TTCATTGATA[A/T]CTTTCAGAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTTAAGAAGGTATTTATTTTTGATTCTGGTTTTCCTATTTTCATTGATA</left_flank>
        <right_flank>CTTTCAGAGCGTTGGAAAGATCATTGGCAAGACTGAGTTCGCTCCACGAT</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAAAGTTTGAACCGAGTTACGTCCTTGCAAACCAACTAACCACCATGCTTACCTCCCCACTCGGCCCAAAAGCCTTGGGGCCAAGAACGCTGTGTGCCACACTAGCACCACTAGCCCAGAACACTCTCTACCCCGTCTCTTAACTTTTAAAGAAGTAGGTCTCGTCATCGAAGCACCAAACCAAGCCGAAGACCCAACGACACCCGATCCAAACACCATCAAATGCGGTAACGGACTCTGCCATCTGAACCTCGGAGAAGTCTGTGTGGGCGGAGCCACCTGCGCTTGCAGACCAGGAGAAAGCCGTGATAATGATAAGGAGAAGTGTGTGCCAGTGACATCGATACCTTTGGTTGTGCGAGTGATGGAGTATGATGGAGAACCAATTCAGTATAGAACCGATTACTCGAAACCAGACACTCCGGCTCATGTGGAAATTGTGGATGCTGTTAAGAAGGTATTTATTTTTGATTCTGGTTTTCCTATTTTCATTGATAACTTTCAGAGCGTTGGAAAGATCATTGGCAAGACTGAGTTCGCTCCACGATTCGTCACCACCGATGTCAACTACATTACCAATCCAAAGGTCAAAAATAGCGATTGGGATAAGGGACTTCTTGGAAACGTCACTGTTCAACTCGCCGGAAAGGAAGACGTCGACAATTGCAGGCTCTATGAGCAATTCGCGGAGGTTGTACGAGAGATGGGAGGACGTGTGGATAGAATCAAATTGTCGGATGACGCAGACTTGGATCCATGCAGAAAGGAAGATGTGAAGAAGGGAATTCCATGTGGAAACACCTTCTGTTCCATTGAGCTTGGAGAGGAATGCATTGCTGGAAGAATCTGTGGGTGTCCAAAGGGACAGAAGAGAAGAGATGCTAGCAGTCCATGCAGAGCAGTTGAGTCCTGGAATATTCCACTCTATGTGGTCCGTGATGGACATGAGAAGATCACCTACTCTCCAGCTTTGTCTAATCCTCTGAATGACGAACATA</canonical>
            <polymorphic>ATCAAAGTTTGAACCGAGTTACGTCCTTGCAAACCAACTAACCACCATGCTTACCTCCCCACTCGGCCCAAAAGCCTTGGGGCCAAGAACGCTGTGTGCCACACTAGCACCACTAGCCCAGAACACTCTCTACCCCGTCTCTTAACTTTTAAAGAAGTAGGTCTCGTCATCGAAGCACCAAACCAAGCCGAAGACCCAACGACACCCGATCCAAACACCATCAAATGCGGTAACGGACTCTGCCATCTGAACCTCGGAGAAGTCTGTGTGGGCGGAGCCACCTGCGCTTGCAGACCAGGAGAAAGCCGTGATAATGATAAGGAGAAGTGTGTGCCAGTGACATCGATACCTTTGGTTGTGCGAGTGATGGAGTATGATGGAGAACCAATTCAGTATAGAACCGATTACTCGAAACCAGACACTCCGGCTCATGTGGAAATTGTGGATGCTGTTAAGAAGGTATTTATTTTTGATTCTGGTTTTCCTATTTTCATTGATAWCTTTCAGAGCGTTGGAAAGATCATTGGCAAGACTGAGTTCGCTCCACGATTCGTCACCACCGATGTCAACTACATTACCAATCCAAAGGTCAAAAATAGCGATTGGGATAAGGGACTTCTTGGAAACGTCACTGTTCAACTCGCCGGAAAGGAAGACGTCGACAATTGCAGGCTCTATGAGCAATTCGCGGAGGTTGTACGAGAGATGGGAGGACGTGTGGATAGAATCAAATTGTCGGATGACGCAGACTTGGATCCATGCAGAAAGGAAGATGTGAAGAAGGGAATTCCATGTGGAAACACCTTCTGTTCCATTGAGCTTGGAGAGGAATGCATTGCTGGAAGAATCTGTGGGTGTCCAAAGGGACAGAAGAGAAGAGATGCTAGCAGTCCATGCAGAGCAGTTGAGTCCTGGAATATTCCACTCTATGTGGTCCGTGATGGACATGAGAAGATCACCTACTCTCCAGCTTTGTCTAATCCTCTGAATGACGAACATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAATTCAGTATAGAACCGATTA</pcr_primer_p1>
		<pcr_primer_p2>CAGTGACGTTTCCAAGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAATTCAGTATAGAACCGATTACTCGAAACCAGACACTCCGGCTCATGTGGAAATTGTGGATGCTGTTAAGAAGGTATTTATTTTTGATTCTGGTTTTCCTATTTTCATTGATAACTTTCAGAGCGTTGGAAAGATCATTGGCAAGACTGAGTTCGCTCCACGATTCGTCACCACCGATGTCAACTACATTACCAATCCAAAGGTCAAAAATAGCGATTGGGATAAGGGACTTCTTGGAAACGTCACTG</canonical_amplicon>
		<polymorphic_amplicon>CCAATTCAGTATAGAACCGATTACTCGAAACCAGACACTCCGGCTCATGTGGAAATTGTGGATGCTGTTAAGAAGGTATTTATTTTTGATTCTGGTTTTCCTATTTTCATTGATAWCTTTCAGAGCGTTGGAAAGATCATTGGCAAGACTGAGTTCGCTCCACGATTCGTCACCACCGATGTCAACTACATTACCAATCCAAAGGTCAAAAATAGCGATTGGGATAAGGGACTTCTTGGAAACGTCACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39149</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>12524</contig_pos>
        <strand>+</strand>
        <context>GGAAATTTTC[C/G]AAAATGCAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGCGGCCTCTCGCGTGATCTTCAGATTTTTTTCTCTTTCTGGAAATTTTC</left_flank>
        <right_flank>AAAATGCAATTTTAAAATGGCCACTTGTTTTCAGCCGATCTCTAGTTTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTTTCTTCTTTTGACAACTTTAACATCTCCAACAACCCGTTTCTTTGCACAAATATGTACCTCTTTATACTTACACAAAAGTGTGTGACCTTTTTTTTTTCAAAAGTTTCCAAACGTTTTCCTAGGACAACGACTCCATTTTTTCTCTTCACCCCCTTTCAACAACCATTCGGACAAGTGTTTCATGATTCCGAGGTACGCGAGAACAAATATGAAAACTTGAAGGGGGGTAAAAACTTATTGAATTGGACTGACTGTGGAAAATATTTTTGAAAAAAAAAACGGATAGATATTTCCATCCTCTTCTTTTTCGTATTTTGTTCCTTCATATGGCTTTTCACACCTTTTCATACAAAAAAAGTTTATTCTTCTTTTTTTTTGCAACAAATTGCTGTTTTCCAGGCAGTCGTCGCTTTTATTCAAAGAATTCAAAGCGATCCACAATAGAGCGGCCTCTCGCGTGATCTTCAGATTTTTTTCTCTTTCTGGAAATTTTCCAAAATGCAATTTTAAAATGGCCACTTGTTTTCAGCCGATCTCTAGTTTATGATAGTTTTGTGGGGATAACAATTTTTTTGTTTTCTTGCTAGACGTAGAATTCCAGTAATTGTGAAAAAAAGCCGGTGACAGCTGAAATTGAAAATTTACTTCAAAGAAAATTTGTTAAGAAAGTATTAGCTATTATGAAATTCGATTACCGTAATACCTGCAATAGAAGCGTCTCCTAACTTTTAGCTTTGAACCAATTGTTCTGGGTTCCTGTAAAAATATGAACAAGTTTTCAACTGATGAATTGTTTGTCATGTTTTCAGCAACATTTTGTCAGTTGATAGATTTTTGATATCAAGCACAGGAATTGAGATAATTGAGCTCAAACTTGGCAGTGAGAGGATTTCTATTACAGGTTTCCTGGTAGATGGGATCCCACACTGTCATCTTTAAGCTCAATTATCTCAATTCCTATGCAAGTTATTAGGTTGTTCGGAAAGTCCTTTCCA</canonical>
            <polymorphic>CACTTTCTTCTTTTGACAACTTTAACATCTCCAACAACCCGTTTCTTTGCACAAATATGTACCTCTTTATACTTACACAAAAGTGTGTGACCTTTTTTTTTTCAAAAGTTTCCAAACGTTTTCCTAGGACAACGACTCCATTTTTTCTCTTCACCCCCTTTCAACAACCATTCGGACAAGTGTTTCATGATTCCGAGGTACGCGAGAACAAATATGAAAACTTGAAGGGGGGTAAAAACTTATTGAATTGGACTGACTGTGGAAAATATTTTTGAAAAAAAAAACGGATAGATATTTCCATCCTCTTCTTTTTCGTATTTTGTTCCTTCATATGGCTTTTCACACCTTTTCATACAAAAAAAGTTTATTCTTCTTTTTTTTTGCAACAAATTGCTGTTTTCCAGGCAGTCGTCGCTTTTATTCAAAGAATTCAAAGCGATCCACAATAGAGCGGCCTCTCGCGTGATCTTCAGATTTTTTTCTCTTTCTGGAAATTTTCSAAAATGCAATTTTAAAATGGCCACTTGTTTTCAGCCGATCTCTAGTTTATGATAGTTTTGTGGGGATAACAATTTTTTTGTTTTCTTGCTAGACGTAGAATTCCAGTAATTGTGAAAAAAAGCCGGTGACAGCTGAAATTGAAAATTTACTTCAAAGAAAATTTGTTAAGAAAGTATTAGCTATTATGAAATTCGATTACCGTAATACCTGCAATAGAAGCGTCTCCTAACTTTTAGCTTTGAACCAATTGTTCTGGGTTCCTGTAAAAATATGAACAAGTTTTCAACTGATGAATTGTTTGTCATGTTTTCAGCAACATTTTGTCAGTTGATAGATTTTTGATATCAAGCACAGGAATTGAGATAATTGAGCTCAAACTTGGCAGTGAGAGGATTTCTATTACAGGTTTCCTGGTAGATGGGATCCCACACTGTCATCTTTAAGCTCAATTATCTCAATTCCTATGCAAGTTATTAGGTTGTTCGGAAAGTCCTTTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCGTATTTTGTTCCTTCATA</pcr_primer_p1>
		<pcr_primer_p2>CCCCACAAAACTATCATAAACTA</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TTTTCGTATTTTGTTCCTTCATATGGCTTTTCACACCTTTTCATACAAAAAAAGTTTATTCTTCTTTTTTTTTGCAACAAATTGCTGTTTTCCAGGCAGTCGTCGCTTTTATTCAAAGAATTCAAAGCGATCCACAATAGAGCGGCCTCTCGCGTGATCTTCAGATTTTTTTCTCTTTCTGGAAATTTTCCAAAATGCAATTTTAAAATGGCCACTTGTTTTCAGCCGATCTCTAGTTTATGATAGTTTTGTGGGG</canonical_amplicon>
		<polymorphic_amplicon>TTTTCGTATTTTGTTCCTTCATATGGCTTTTCACACCTTTTCATACAAAAAAAGTTTATTCTTCTTTTTTTTTGCAACAAATTGCTGTTTTCCAGGCAGTCGTCGCTTTTATTCAAAGAATTCAAAGCGATCCACAATAGAGCGGCCTCTCGCGTGATCTTCAGATTTTTTTCTCTTTCTGGAAATTTTCSAAAATGCAATTTTAAAATGGCCACTTGTTTTCAGCCGATCTCTAGTTTATGATAGTTTTGTGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39154</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>51935</contig_pos>
        <strand>+</strand>
        <context>GATCGTACCA[A/G]AATTCCAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAAAAGCCTCACTATTGCTCTGGTAGCTCATTTCAATAAGATCGTACCA</left_flank>
        <right_flank>AATTCCAAATTCCAAACTCAATCTCAATAATTTAGCCATTCTCAGGCATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCTCAGGCGTCATGTGTTCTCTTAAAATTCCAAACTCCAAACTTTAAAATCTCAAACAGCTTTATTAATACTCTAGGTAGCTCATTTCAATAAGATCGTATCAAAATTCCAAATTCCAAACTCAATCTCAAAAATTTAGCCATTCTCAGGCGTCATGTGTTCTCTTAAAATTCCAAACTCCAAACTTTAAAATCTCAAACAGCTTTATTAATACTCTAGGTAGCTCATCTCAATAAGATCGTACCAAAATTCCAAACTCCAAACTCAATCTCAAAAATTTAGCCANNNNNNNNNNCTAAAAATCTCAAAAAGTCTCACTATCACTCTAGGTAGCTCATCTCAATAAGATCGTACCAAAATTCCAAATTCCAAACTCAATCTCAATAATTTAGCCATTCTCAGGCGTCATGTGTTCTCTCAAAATTCCAAATCAAATCTTAAAAATCTCAAAAAGCCTCACTATTGCTCTGGTAGCTCATTTCAATAAGATCGTACCAAAATTCCAAATTCCAAACTCAATCTCAATAATTTAGCCATTCTCAGGCATCATGTGTTCTCTCAAAATTCCAAATCAAATCTTAAAAATCTCAAAAAGTCTCACTATCACTCTAGGTAGCTCATTTCAATAAGATCGTACCAAAATTCCAATTTCTAAACTCAATCTCAATAATTTAGCCATTCTCAGGCATCATGTGTTCTCTCAAAATTCCAAACTCCAAACTTTAAAATCTCAAAAAGCCTCACTATTGCTCTGGTAGCTCATTTCAATAAGATCGTACCAAAATTCCAAATTCCAAACTCAATCTCAATAATTTAGCCATTCTCAGGCGTCATGTGTTCTCTCAAAATTCCAAACTCCAAACTTTAAAATCTCAAACAATTTTTTTATTACTCTAGGTAGCTCATCTCAATAAGATCGTACCAAAATTCCAATTTCTAAACTCAATCTCAATAATTTAGCCATTCTCAGGCATCATGTGTTCTCTCAAAATTCCAAA</canonical>
            <polymorphic>ATTCTCAGGCGTCATGTGTTCTCTTAAAATTCCAAACTCCAAACTTTAAAATCTCAAACAGCTTTATTAATACTCTAGGTAGCTCATTTCAATAAGATCGTATCAAAATTCCAAATTCCAAACTCAATCTCAAAAATTTAGCCATTCTCAGGCGTCATGTGTTCTCTTAAAATTCCAAACTCCAAACTTTAAAATCTCAAACAGCTTTATTAATACTCTAGGTAGCTCATCTCAATAAGATCGTACCAAAATTCCAAACTCCAAACTCAATCTCAAAAATTTAGCCANNNNNNNNNNCTAAAAATCTCAAAAAGTCTCACTATCACTCTAGGTAGCTCATCTCAATAAGATCGTACCARAATTCCAAATTCCAAACTCAATCTCAATAATTTAGCCATTCTCAGGCGTCATGTGTTCTCTCAAAATTCCAAATCAAATCTTAAAAATCTCAAAAAGCCTCACTATTGCTCTGGTAGCTCATTTCAATAAGATCGTACCAAAATTCCAAATTCCAAACTCAATCTCAATAATTTAGCCATTCTCAGGCATCATGTGTTCTCTCAAAATTCCAAATCAAATCTTAAAAATCTCAAAAAGTCTCACTATCACTCTAGGTAGCTCATTTCAATAAGATCGTACCAAAATTCCAATTTCTAAACTCAATCTCAATAATTTAGCCATTCTCAGGCATCATGTGTTCTCTCAAAATTCCAAACTCCAAACTTTAAAATCTCAAAAAGCCTCACTATTGCTCTGGTAGCTCATTTCAATAAGATCGTACCAAAATTCCAAATTCCAAACTCAATCTCAATAATTTAGCCATTCTCAGGCGTCATGTGTTCTCTCAAAATTCCAAACTCCAAACTTTAAAATCTCAAACAATTTTTTTATTACTCTAGGTAGCTCATCTCAATAAGATCGTACCAAAATTCCAATTTCTAAACTCAATCTCAATAATTTAGCCATTCTCAGGCATCATGTGTTCTCTCAAAATTCCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>82 79 79 79 78 78 77 64 64 57 57 57 36 28 27 21 9 7 7 7 7</canonical_bands>
                <polymorphic_bands>89 79 79 79 78 78 77 64 64 57 57 57 36 28 27 21 9 7 7 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATCTCAAAAAGCCTCACTAT</pcr_primer_p1>
		<pcr_primer_p2>CCTGAGAATGGCTAAATTATTG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAAATCTCAAAAAGCCTCACTATTGCTCTGGTAGCTCATTTCAATAAGATCGTACCAAAATTCCAAATTCCAAACTCAATCTCAATAATTTAGCCATTCTCAGG</canonical_amplicon>
		<polymorphic_amplicon>AAAATCTCAAAAAGCCTCACTATTGCTCTGGTAGCTCATTTCAATAAGATCGTACCAAAATTCCAAATTCCAAACTCAATCTCAATAATTTAGCCATTCTCAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39155</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>52042</contig_pos>
        <strand>+</strand>
        <context>GTCTCACTAT[C/T]RCTCTAGGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCTCAAAATTCCAAATCAAATCTTAAAAATCTCAAAAAGTCTCACTAT</left_flank>
        <right_flank>ACTCTAGGTAGCTCATTTCAATAAGATCGTACCAAAATTCCAATTTCTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTCCAAATTCCAAACTCAATCTCAAAAATTTAGCCATTCTCAGGCGTCATGTGTTCTCTTAAAATTCCAAACTCCAAACTTTAAAATCTCAAACAGCTTTATTAATACTCTAGGTAGCTCATCTCAATAAGATCGTACCAAAATTCCAAACTCCAAACTCAATCTCAAAAATTTAGCCANNNNNNNNNNCTAAAAATCTCAAAAAGTCTCACTATCACTCTAGGTAGCTCATCTCAATAAGATCGTACCAAAATTCCAAATTCCAAACTCAATCTCAATAATTTAGCCATTCTCAGGCGTCATGTGTTCTCTCAAAATTCCAAATCAAATCTTAAAAATCTCAAAAAGCCTCACTATTGCTCTGGTAGCTCATTTCAATAAGATCGTACCAAAATTCCAAATTCCAAACTCAATCTCAATAATTTAGCCATTCTCAGGCATCATGTGTTCTCTCAAAATTCCAAATCAAATCTTAAAAATCTCAAAAAGTCTCACTATCACTCTAGGTAGCTCATTTCAATAAGATCGTACCAAAATTCCAATTTCTAAACTCAATCTCAATAATTTAGCCATTCTCAGGCATCATGTGTTCTCTCAAAATTCCAAACTCCAAACTTTAAAATCTCAAAAAGCCTCACTATTGCTCTGGTAGCTCATTTCAATAAGATCGTACCAAAATTCCAAATTCCAAACTCAATCTCAATAATTTAGCCATTCTCAGGCGTCATGTGTTCTCTCAAAATTCCAAACTCCAAACTTTAAAATCTCAAACAATTTTTTTATTACTCTAGGTAGCTCATCTCAATAAGATCGTACCAAAATTCCAATTTCTAAACTCAATCTCAATAATTTAGCCATTCTCAGGCATCATGTGTTCTCTCAAAATTCCAAATCAAATCTTAAAAATCTCAAAAAGTCTCACTATCACTCTAGGTAGCTCATCTCAATAAGATCGTACCAAAATTCCAAATTCCAAACTCAATCTCAATAATTTAGCCA</canonical>
            <polymorphic>ATTCCAAATTCCAAACTCAATCTCAAAAATTTAGCCATTCTCAGGCGTCATGTGTTCTCTTAAAATTCCAAACTCCAAACTTTAAAATCTCAAACAGCTTTATTAATACTCTAGGTAGCTCATCTCAATAAGATCGTACCAAAATTCCAAACTCCAAACTCAATCTCAAAAATTTAGCCANNNNNNNNNNCTAAAAATCTCAAAAAGTCTCACTATYACTCTAGGTAGCTCATCTCAATAAGATCGTACCAAAATTCCAAATTCCAAACTCAATCTCAATAATTTAGCCATTCTCAGGCGTCATGTGTTCTCTCAAAATTCCAAATCAAATCTTAAAAATCTCAAAAAGCCTCACTATTGCTCTGGTAGCTCATTTCAATAAGATCGTACCAAAATTCCAAATTCCAAACTCAATCTCAATAATTTAGCCATTCTCAGGCATCATGTGTTCTCTCAAAATTCCAAATCAAATCTTAAAAATCTCAAAAAGTCTCACTATCACTCTAGGTAGCTCATTTCAATAAGATCGTACCAAAATTCCAATTTCTAAACTCAATCTCAATAATTTAGCCATTCTCAGGCATCATGTGTTCTCTCAAAATTCCAAACTCCAAACTTTAAAATCTCAAAAAGCCTCACTATTGCTCTGGTAGCTCATTTCAATAAGATCGTACCAAAATTCCAAATTCCAAACTCAATCTCAATAATTTAGCCATTCTCAGGCGTCATGTGTTCTCTCAAAATTCCAAACTCCAAACTTTAAAATCTCAAACAATTTTTTTATTACTCTAGGTAGCTCATCTCAATAAGATCGTACCAAAATTCCAATTTCTAAACTCAATCTCAATAATTTAGCCATTCTCAGGCATCATGTGTTCTCTCAAAATTCCAAATCAAATCTTAAAAATCTCAAAAAGTCTCACTATCACTCTAGGTAGCTCATCTCAATAAGATCGTACCAAAATTCCAAATTCCAAACTCAATCTCAATAATTTAGCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>158 143 94 94 89 89 72 54 48 47 47 47 6 6 6</canonical_bands>
                <polymorphic_bands>158 143 95 94 94 89 72 54 48 47 47 47 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAATAATTTAGCCATTCTCAG</pcr_primer_p1>
		<pcr_primer_p2>CTTATTGAAATGAGCTACCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTCAATAATTTAGCCATTCTCAGGCGTCATGTGTTCTCTCAAAATTCCAAATCAAATCTTAAAAATCTCAAAAAGCCTCACTATTGCTCTGGTAGCTCATTTCAATAAGATCGTACCAAAATTCCAAATTCCAAACTCAATCTCAATAATTTAGCCATTCTCAGGCATCATGTGTTCTCTCAAAATTCCAAATCAAATCTTAAAAATCTCAAAAAGTCTCACTATCACTCTAGGTAGCTCATTTCAATAAGATCGTACCAAAATTCCAATTTCTAAACTCAATCTCAATAATTTAGCCATTCTCAGGCATCATGTGTTCTCTCAAAATTCCAAACTCCAAACTTTAAAATCTCAAAAAGCCTCACTATTGCTCTGGTAGCTCATTTCAATAAG</canonical_amplicon>
		<polymorphic_amplicon>CTCAATAATTTAGCCATTCTCAGGCGTCATGTGTTCTCTCAAAATTCCAAATCAAATCTTAAAAATCTCAAAAAGCCTCACTATTGCTCTGGTAGCTCATTTCAATAAGATCGTACCAAAATTCCAAATTCCAAACTCAATCTCAATAATTTAGCCATTCTCAGGCATCATGTGTTCTCTCAAAATTCCAAATCAAATCTTAAAAATCTCAAAAAGTCTCACTATCACTCTAGGTAGCTCATTTCAATAAGATCGTACCAAAATTCCAATTTCTAAACTCAATCTCAATAATTTAGCCATTCTCAGGCATCATGTGTTCTCTCAAAATTCCAAACTCCAAACTTTAAAATCTCAAAAAGCCTCACTATTGCTCTGGTAGCTCATTTCAATAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39156</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>52043</contig_pos>
        <strand>+</strand>
        <context>TCTCACTATY[A/G]CTCTAGGTAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCTCAAAATTCCAAATCAAATCTTAAAAATCTCAAAAAGTCTCACTATC</left_flank>
        <right_flank>CTCTAGGTAGCTCATTTCAATAAGATCGTACCAAAATTCCAATTTCTAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCAAATTCCAAACTCAATCTCAAAAATTTAGCCATTCTCAGGCGTCATGTGTTCTCTTAAAATTCCAAACTCCAAACTTTAAAATCTCAAACAGCTTTATTAATACTCTAGGTAGCTCATCTCAATAAGATCGTACCAAAATTCCAAACTCCAAACTCAATCTCAAAAATTTAGCCANNNNNNNNNNCTAAAAATCTCAAAAAGTCTCACTATCACTCTAGGTAGCTCATCTCAATAAGATCGTACCAAAATTCCAAATTCCAAACTCAATCTCAATAATTTAGCCATTCTCAGGCGTCATGTGTTCTCTCAAAATTCCAAATCAAATCTTAAAAATCTCAAAAAGCCTCACTATTGCTCTGGTAGCTCATTTCAATAAGATCGTACCAAAATTCCAAATTCCAAACTCAATCTCAATAATTTAGCCATTCTCAGGCATCATGTGTTCTCTCAAAATTCCAAATCAAATCTTAAAAATCTCAAAAAGTCTCACTATCACTCTAGGTAGCTCATTTCAATAAGATCGTACCAAAATTCCAATTTCTAAACTCAATCTCAATAATTTAGCCATTCTCAGGCATCATGTGTTCTCTCAAAATTCCAAACTCCAAACTTTAAAATCTCAAAAAGCCTCACTATTGCTCTGGTAGCTCATTTCAATAAGATCGTACCAAAATTCCAAATTCCAAACTCAATCTCAATAATTTAGCCATTCTCAGGCGTCATGTGTTCTCTCAAAATTCCAAACTCCAAACTTTAAAATCTCAAACAATTTTTTTATTACTCTAGGTAGCTCATCTCAATAAGATCGTACCAAAATTCCAATTTCTAAACTCAATCTCAATAATTTAGCCATTCTCAGGCATCATGTGTTCTCTCAAAATTCCAAATCAAATCTTAAAAATCTCAAAAAGTCTCACTATCACTCTAGGTAGCTCATCTCAATAAGATCGTACCAAAATTCCAAATTCCAAACTCAATCTCAATAATTTAGCCAT</canonical>
            <polymorphic>TTCCAAATTCCAAACTCAATCTCAAAAATTTAGCCATTCTCAGGCGTCATGTGTTCTCTTAAAATTCCAAACTCCAAACTTTAAAATCTCAAACAGCTTTATTAATACTCTAGGTAGCTCATCTCAATAAGATCGTACCAAAATTCCAAACTCCAAACTCAATCTCAAAAATTTAGCCANNNNNNNNNNCTAAAAATCTCAAAAAGTCTCACTATCRCTCTAGGTAGCTCATCTCAATAAGATCGTACCAAAATTCCAAATTCCAAACTCAATCTCAATAATTTAGCCATTCTCAGGCGTCATGTGTTCTCTCAAAATTCCAAATCAAATCTTAAAAATCTCAAAAAGCCTCACTATTGCTCTGGTAGCTCATTTCAATAAGATCGTACCAAAATTCCAAATTCCAAACTCAATCTCAATAATTTAGCCATTCTCAGGCATCATGTGTTCTCTCAAAATTCCAAATCAAATCTTAAAAATCTCAAAAAGTCTCACTATCACTCTAGGTAGCTCATTTCAATAAGATCGTACCAAAATTCCAATTTCTAAACTCAATCTCAATAATTTAGCCATTCTCAGGCATCATGTGTTCTCTCAAAATTCCAAACTCCAAACTTTAAAATCTCAAAAAGCCTCACTATTGCTCTGGTAGCTCATTTCAATAAGATCGTACCAAAATTCCAAATTCCAAACTCAATCTCAATAATTTAGCCATTCTCAGGCGTCATGTGTTCTCTCAAAATTCCAAACTCCAAACTTTAAAATCTCAAACAATTTTTTTATTACTCTAGGTAGCTCATCTCAATAAGATCGTACCAAAATTCCAATTTCTAAACTCAATCTCAATAATTTAGCCATTCTCAGGCATCATGTGTTCTCTCAAAATTCCAAATCAAATCTTAAAAATCTCAAAAAGTCTCACTATCACTCTAGGTAGCTCATCTCAATAAGATCGTACCAAAATTCCAAATTCCAAACTCAATCTCAATAATTTAGCCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>158 143 94 94 89 89 73 53 48 47 47 47 6 6 6</canonical_bands>
                <polymorphic_bands>158 143 95 94 94 89 73 53 48 47 47 47 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCAATAATTTAGCCATTCTCAG</pcr_primer_p1>
		<pcr_primer_p2>CTTATTGAAATGAGCTACCAGAG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CTCAATAATTTAGCCATTCTCAGGCGTCATGTGTTCTCTCAAAATTCCAAATCAAATCTTAAAAATCTCAAAAAGCCTCACTATTGCTCTGGTAGCTCATTTCAATAAGATCGTACCAAAATTCCAAATTCCAAACTCAATCTCAATAATTTAGCCATTCTCAGGCATCATGTGTTCTCTCAAAATTCCAAATCAAATCTTAAAAATCTCAAAAAGTCTCACTATCACTCTAGGTAGCTCATTTCAATAAGATCGTACCAAAATTCCAATTTCTAAACTCAATCTCAATAATTTAGCCATTCTCAGGCATCATGTGTTCTCTCAAAATTCCAAACTCCAAACTTTAAAATCTCAAAAAGCCTCACTATTGCTCTGGTAGCTCATTTCAATAAG</canonical_amplicon>
		<polymorphic_amplicon>CTCAATAATTTAGCCATTCTCAGGCGTCATGTGTTCTCTCAAAATTCCAAATCAAATCTTAAAAATCTCAAAAAGCCTCACTATTGCTCTGGTAGCTCATTTCAATAAGATCGTACCAAAATTCCAAATTCCAAACTCAATCTCAATAATTTAGCCATTCTCAGGCATCATGTGTTCTCTCAAAATTCCAAATCAAATCTTAAAAATCTCAAAAAGTCTCACTATCACTCTAGGTAGCTCATTTCAATAAGATCGTACCAAAATTCCAATTTCTAAACTCAATCTCAATAATTTAGCCATTCTCAGGCATCATGTGTTCTCTCAAAATTCCAAACTCCAAACTTTAAAATCTCAAAAAGCCTCACTATTGCTCTGGTAGCTCATTTCAATAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39157</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>67400</contig_pos>
        <strand>+</strand>
        <context>TCGGCTGGAT[C/T]TGAATTAAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAATTTTTAGAGCGACTTGAAAGTTTCCAAGTGCAAAAGTCGGCTGGAT</left_flank>
        <right_flank>TGAATTAAAGCAAAACTAATCTGAATTAGAGCAGAAAAAGTGAAAAAGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAAAACTTAAGAAATTTTTCACAACCCTAGAAACATGGGAATATGTTAAACCACGTGATACTCAGAAATTCTCCTACCCCAAAACTAACTGAACTCACTTTTGGACCACTTGTGATTCTCCGTTCATTGGTTGCAGTCCGGGAACTTGTTTAGATCACTACTCTGTAATTTTAAGGCATTTTTTACATGACTATACAACTGGTATGAGCTGAAAAAATTAAGCCAGAAAGCATAGAGGTGAGACTAGTACATTTGCAAAAGACGATAGTGAGAAAAAAAAAGGAAACTGAAAAATTCGCCCCCAAAATATGCGCCGAGAAACGAATGAAAGCCTATTTTGTGCATGAGAGGCGTCGTTCTTTTTTTCCTCGAGAGGGAAGCGTCACAAATGGTAGGCAATCAGAAAATGCTTCCTATCCTCAAAGAATACTACTTCACCAAACGTGCCAATTTTTAGAGCGACTTGAAAGTTTCCAAGTGCAAAAGTCGGCTGGATCTGAATTAAAGCAAAACTAATCTGAATTAGAGCAGAAAAAGTGAAAAAGAGAGAGAGAGAGAGAGAGGGAGAATGAGTTTTTAAGTGTGAAAAAAACATTTTCAACTTTCCCACATGATAACGTTGGATGTATTGATTAGTTTCTTAAATAAGTCACATGTGCCTCGTGCAGGTCCATGGGAAAATATAGAAACTAGAGTGAATGACGTGAAGAGTATTGAAACGAACGTCTCCATGGTAAACTGACATTTCGCATTTTTCTTAGTCAAGAACTCCACATCATCAGGCAAACTCAACCTCCTTAGAAGCTCCTATTTTGCACGACTCCTTATGTCACCTCCGGGGGACTCATCTGTCTTAGCCTCTCCTGGAAGAAACCTCCTTCCAACCACCATCTTCTCGCCTTATTTGCCTCTCCTCCCTACTCAAATCCATCTTTTTTAGGAGGTACTGGATGGACTAAATCTGACAACCCCAACGAACCACCGCTCACACCGACGT</canonical>
            <polymorphic>AAAAAAAACTTAAGAAATTTTTCACAACCCTAGAAACATGGGAATATGTTAAACCACGTGATACTCAGAAATTCTCCTACCCCAAAACTAACTGAACTCACTTTTGGACCACTTGTGATTCTCCGTTCATTGGTTGCAGTCCGGGAACTTGTTTAGATCACTACTCTGTAATTTTAAGGCATTTTTTACATGACTATACAACTGGTATGAGCTGAAAAAATTAAGCCAGAAAGCATAGAGGTGAGACTAGTACATTTGCAAAAGACGATAGTGAGAAAAAAAAAGGAAACTGAAAAATTCGCCCCCAAAATATGCGCCGAGAAACGAATGAAAGCCTATTTTGTGCATGAGAGGCGTCGTTCTTTTTTTCCTCGAGAGGGAAGCGTCACAAATGGTAGGCAATCAGAAAATGCTTCCTATCCTCAAAGAATACTACTTCACCAAACGTGCCAATTTTTAGAGCGACTTGAAAGTTTCCAAGTGCAAAAGTCGGCTGGATYTGAATTAAAGCAAAACTAATCTGAATTAGAGCAGAAAAAGTGAAAAAGAGAGAGAGAGAGAGAGAGGGAGAATGAGTTTTTAAGTGTGAAAAAAACATTTTCAACTTTCCCACATGATAACGTTGGATGTATTGATTAGTTTCTTAAATAAGTCACATGTGCCTCGTGCAGGTCCATGGGAAAATATAGAAACTAGAGTGAATGACGTGAAGAGTATTGAAACGAACGTCTCCATGGTAAACTGACATTTCGCATTTTTCTTAGTCAAGAACTCCACATCATCAGGCAAACTCAACCTCCTTAGAAGCTCCTATTTTGCACGACTCCTTATGTCACCTCCGGGGGACTCATCTGTCTTAGCCTCTCCTGGAAGAAACCTCCTTCCAACCACCATCTTCTCGCCTTATTTGCCTCTCCTCCCTACTCAAATCCATCTTTTTTAGGAGGTACTGGATGGACTAAATCTGACAACCCCAACGAACCACCGCTCACACCGACGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>504 341 155</canonical_bands>
                <polymorphic_bands>845 155</polymorphic_bands>
            </assay>
            <assay>
                <site>RGATCY</site>
                <isoschizomers>
                    <enzyme>BstX2I</enzyme>
                    <enzyme>BstYI</enzyme>
                    <enzyme>MflI</enzyme>
                    <enzyme>PsuI</enzyme>
                    <enzyme>XhoII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>444 338 96 67 34 21</canonical_bands>
                <polymorphic_bands>444 338 117 67 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGGTAGGCAATCAGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATCAATACATCCAACGTTATCAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATGGTAGGCAATCAGAAAATGCTTCCTATCCTCAAAGAATACTACTTCACCAAACGTGCCAATTTTTAGAGCGACTTGAAAGTTTCCAAGTGCAAAAGTCGGCTGGATCTGAATTAAAGCAAAACTAATCTGAATTAGAGCAGAAAAAGTGAAAAAGAGAGAGAGAGAGAGAGAGGGAGAATGAGTTTTTAAGTGTGAAAAAAACATTTTCAACTTTCCCACATGATAACGTTGGATGTATTGAT</canonical_amplicon>
		<polymorphic_amplicon>AATGGTAGGCAATCAGAAAATGCTTCCTATCCTCAAAGAATACTACTTCACCAAACGTGCCAATTTTTAGAGCGACTTGAAAGTTTCCAAGTGCAAAAGTCGGCTGGATYTGAATTAAAGCAAAACTAATCTGAATTAGAGCAGAAAAAGTGAAAAAGAGAGAGAGAGAGAGAGAGGGAGAATGAGTTTTTAAGTGTGAAAAAAACATTTTCAACTTTCCCACATGATAACGTTGGATGTATTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39158</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>161588</contig_pos>
        <strand>+</strand>
        <context>AAAGCAAGCA[C/T]CTCTCGGGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTAACTTGTGATAGTGTTTAATCGGCTCGTGAAAACAAAAAGCAAGCA</left_flank>
        <right_flank>CTCTCGGGAGGCTTGAGACGTTCTCATGTGTGTTCAGTTAGAGGTCCGGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATAGAATTTTAAGGCTCACCTTGAAGCGTGACTGGCTAGCACTGGAAGCCATTGTCAGTGGAAGCGGTGGATTTTTCTTGTGAATCGGTGTGCTGGGAACGGTGCTGCAGCTATCCAAGCCGGTCAAGTCGGGATCGCGACGGAGTGGGCGGAAATCCACAGATTTGCAGAATCTCCCAGGCGTCGAATCTTCAAAAGAGAGCCGTAATCACAGAGAAGGGGGAAGACGCGGAAGATGGAACAAAAAGGATTTTCCTCCCTCCCATCCAATTTCCGGATCGAATGTGGCACAGAAAAAGGAGGTCGTGTGTGAAAGAAAAAAATTTTTGGTGGTGGTGTGGAAAAGACTTATTGAATGGCTCATTAATTTTGTGCGAGCGCCGGGGGTGGTGGCGACGCACACACACACACACTTCACTACTCTGCTTATCATCTGTTTTCCACAAAGTTTAACTTGTGATAGTGTTTAATCGGCTCGTGAAAACAAAAAGCAAGCACCTCTCGGGAGGCTTGAGACGTTCTCATGTGTGTTCAGTTAGAGGTCCGGATTTTTTTTTTCGAAATTTTGTGGAAATCAAGAAATTTGTTGAACAACAACAAAAAATTGTTCCTCTAATAAATATTTAACAGAAGCCCAGGAACTTTGAGCTTGATTATCCCGGTTCCTATGAGAGATATCAAAAATTTGTCAACTGTGAAAATATAGGCGATATGATGATAAATGATTTGTCAGTTAACTAATTTTTGATGTCTTTCACAGGAATCGAGTTACTTGGGCTCAAAGTTGTGGGTTTAGGTGGGATTCTATTAGAGGGAATACAGTATATACAGTACCGGGAAAAGTATAACATATGTATTCTTACTTTTAAGTAGAGAAAGTGAATTTAGTTTTTTTTTTAAAAATAGTCTAGATTATTTTAGTTTGACTTCCCAAGTTTAAATTACAGTAATAAAAATGTTGATTGATTTATTTGCCATGTTTTTCGCCAAATTCCATT</canonical>
            <polymorphic>AAATAGAATTTTAAGGCTCACCTTGAAGCGTGACTGGCTAGCACTGGAAGCCATTGTCAGTGGAAGCGGTGGATTTTTCTTGTGAATCGGTGTGCTGGGAACGGTGCTGCAGCTATCCAAGCCGGTCAAGTCGGGATCGCGACGGAGTGGGCGGAAATCCACAGATTTGCAGAATCTCCCAGGCGTCGAATCTTCAAAAGAGAGCCGTAATCACAGAGAAGGGGGAAGACGCGGAAGATGGAACAAAAAGGATTTTCCTCCCTCCCATCCAATTTCCGGATCGAATGTGGCACAGAAAAAGGAGGTCGTGTGTGAAAGAAAAAAATTTTTGGTGGTGGTGTGGAAAAGACTTATTGAATGGCTCATTAATTTTGTGCGAGCGCCGGGGGTGGTGGCGACGCACACACACACACACTTCACTACTCTGCTTATCATCTGTTTTCCACAAAGTTTAACTTGTGATAGTGTTTAATCGGCTCGTGAAAACAAAAAGCAAGCAYCTCTCGGGAGGCTTGAGACGTTCTCATGTGTGTTCAGTTAGAGGTCCGGATTTTTTTTTTCGAAATTTTGTGGAAATCAAGAAATTTGTTGAACAACAACAAAAAATTGTTCCTCTAATAAATATTTAACAGAAGCCCAGGAACTTTGAGCTTGATTATCCCGGTTCCTATGAGAGATATCAAAAATTTGTCAACTGTGAAAATATAGGCGATATGATGATAAATGATTTGTCAGTTAACTAATTTTTGATGTCTTTCACAGGAATCGAGTTACTTGGGCTCAAAGTTGTGGGTTTAGGTGGGATTCTATTAGAGGGAATACAGTATATACAGTACCGGGAAAAGTATAACATATGTATTCTTACTTTTAAGTAGAGAAAGTGAATTTAGTTTTTTTTTTAAAAATAGTCTAGATTATTTTAGTTTGACTTCCCAAGTTTAAATTACAGTAATAAAAATGTTGATTGATTTATTTGCCATGTTTTTCGCCAAATTCCATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>127 117 82 76 60 52 43 40 34 32 31 26 20 20 19 18 17 16 15 15 13 12 12 12 11 10 9 8 8 6 5 3 3 3 3 2 2 2 2 2 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>127 117 82 76 60 52 48 43 40 34 32 26 20 20 19 18 16 15 15 13 12 12 12 11 10 9 8 8 6 5 3 3 3 3 2 2 2 2 2 2 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGGTCGTGTGTGAAAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>ATCCGGACCTCTAACTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGGTCGTGTGTGAAAGAAAAAAATTTTTGGTGGTGGTGTGGAAAAGACTTATTGAATGGCTCATTAATTTTGTGCGAGCGCCGGGGGTGGTGGCGACGCACACACACACACACTTCACTACTCTGCTTATCATCTGTTTTCCACAAAGTTTAACTTGTGATAGTGTTTAATCGGCTCGTGAAAACAAAAAGCAAGCACCTCTCGGGAGGCTTGAGACGTTCTCATGTGTGTTCAGTTAGAGGTCCGGAT</canonical_amplicon>
		<polymorphic_amplicon>AGGTCGTGTGTGAAAGAAAAAAATTTTTGGTGGTGGTGTGGAAAAGACTTATTGAATGGCTCATTAATTTTGTGCGAGCGCCGGGGGTGGTGGCGACGCACACACACACACACTTCACTACTCTGCTTATCATCTGTTTTCCACAAAGTTTAACTTGTGATAGTGTTTAATCGGCTCGTGAAAACAAAAAGCAAGCAYCTCTCGGGAGGCTTGAGACGTTCTCATGTGTGTTCAGTTAGAGGTCCGGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39159</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>161686</contig_pos>
        <strand>+</strand>
        <context>GTTGAACAAC[C/T]AMAAAAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGATTTTTTTTTTCGAAATTTTGTGGAAATCAAGAAATTTGTTGAACAAC</left_flank>
        <right_flank>ACAAAAAATTGTTCCTCTAATAAATATTTAACAGAAGCCCAGGAACTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACGGTGCTGCAGCTATCCAAGCCGGTCAAGTCGGGATCGCGACGGAGTGGGCGGAAATCCACAGATTTGCAGAATCTCCCAGGCGTCGAATCTTCAAAAGAGAGCCGTAATCACAGAGAAGGGGGAAGACGCGGAAGATGGAACAAAAAGGATTTTCCTCCCTCCCATCCAATTTCCGGATCGAATGTGGCACAGAAAAAGGAGGTCGTGTGTGAAAGAAAAAAATTTTTGGTGGTGGTGTGGAAAAGACTTATTGAATGGCTCATTAATTTTGTGCGAGCGCCGGGGGTGGTGGCGACGCACACACACACACACTTCACTACTCTGCTTATCATCTGTTTTCCACAAAGTTTAACTTGTGATAGTGTTTAATCGGCTCGTGAAAACAAAAAGCAAGCACCTCTCGGGAGGCTTGAGACGTTCTCATGTGTGTTCAGTTAGAGGTCCGGATTTTTTTTTTCGAAATTTTGTGGAAATCAAGAAATTTGTTGAACAACAACAAAAAATTGTTCCTCTAATAAATATTTAACAGAAGCCCAGGAACTTTGAGCTTGATTATCCCGGTTCCTATGAGAGATATCAAAAATTTGTCAACTGTGAAAATATAGGCGATATGATGATAAATGATTTGTCAGTTAACTAATTTTTGATGTCTTTCACAGGAATCGAGTTACTTGGGCTCAAAGTTGTGGGTTTAGGTGGGATTCTATTAGAGGGAATACAGTATATACAGTACCGGGAAAAGTATAACATATGTATTCTTACTTTTAAGTAGAGAAAGTGAATTTAGTTTTTTTTTTAAAAATAGTCTAGATTATTTTAGTTTGACTTCCCAAGTTTAAATTACAGTAATAAAAATGTTGATTGATTTATTTGCCATGTTTTTCGCCAAATTCCATTTTGACGAGATACCGTATTTGCAATTTGAGCTCGATTATCTCGATTCTTATGAGAGATTTTGAAAATTCGTCAACTGATAAACTGTTGATTACAATATC</canonical>
            <polymorphic>GAACGGTGCTGCAGCTATCCAAGCCGGTCAAGTCGGGATCGCGACGGAGTGGGCGGAAATCCACAGATTTGCAGAATCTCCCAGGCGTCGAATCTTCAAAAGAGAGCCGTAATCACAGAGAAGGGGGAAGACGCGGAAGATGGAACAAAAAGGATTTTCCTCCCTCCCATCCAATTTCCGGATCGAATGTGGCACAGAAAAAGGAGGTCGTGTGTGAAAGAAAAAAATTTTTGGTGGTGGTGTGGAAAAGACTTATTGAATGGCTCATTAATTTTGTGCGAGCGCCGGGGGTGGTGGCGACGCACACACACACACACTTCACTACTCTGCTTATCATCTGTTTTCCACAAAGTTTAACTTGTGATAGTGTTTAATCGGCTCGTGAAAACAAAAAGCAAGCACCTCTCGGGAGGCTTGAGACGTTCTCATGTGTGTTCAGTTAGAGGTCCGGATTTTTTTTTTCGAAATTTTGTGGAAATCAAGAAATTTGTTGAACAACYACAAAAAATTGTTCCTCTAATAAATATTTAACAGAAGCCCAGGAACTTTGAGCTTGATTATCCCGGTTCCTATGAGAGATATCAAAAATTTGTCAACTGTGAAAATATAGGCGATATGATGATAAATGATTTGTCAGTTAACTAATTTTTGATGTCTTTCACAGGAATCGAGTTACTTGGGCTCAAAGTTGTGGGTTTAGGTGGGATTCTATTAGAGGGAATACAGTATATACAGTACCGGGAAAAGTATAACATATGTATTCTTACTTTTAAGTAGAGAAAGTGAATTTAGTTTTTTTTTTAAAAATAGTCTAGATTATTTTAGTTTGACTTCCCAAGTTTAAATTACAGTAATAAAAATGTTGATTGATTTATTTGCCATGTTTTTCGCCAAATTCCATTTTGACGAGATACCGTATTTGCAATTTGAGCTCGATTATCTCGATTCTTATGAGAGATTTTGAAAATTCGTCAACTGATAAACTGTTGATTACAATATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTAGAGGTCCGGATTTT</pcr_primer_p1>
		<pcr_primer_p2>ATATGTTATACTTTTCCCGGTACT</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>CAGTTAGAGGTCCGGATTTTTTTTTTCGAAATTTTGTGGAAATCAAGAAATTTGTTGAACAACAACAAAAAATTGTTCCTCTAATAAATATTTAACAGAAGCCCAGGAACTTTGAGCTTGATTATCCCGGTTCCTATGAGAGATATCAAAAATTTGTCAACTGTGAAAATATAGGCGATATGATGATAAATGATTTGTCAGTTAACTAATTTTTGATGTCTTTCACAGGAATCGAGTTACTTGGGCTCAAAGTTGTGGGTTTAGGTGGGATTCTATTAGAGGGAATACAGTATATACAGTACCGGGAAAAGTATAACATAT</canonical_amplicon>
		<polymorphic_amplicon>CAGTTAGAGGTCCGGATTTTTTTTTTCGAAATTTTGTGGAAATCAAGAAATTTGTTGAACAACYACAAAAAATTGTTCCTCTAATAAATATTTAACAGAAGCCCAGGAACTTTGAGCTTGATTATCCCGGTTCCTATGAGAGATATCAAAAATTTGTCAACTGTGAAAATATAGGCGATATGATGATAAATGATTTGTCAGTTAACTAATTTTTGATGTCTTTCACAGGAATCGAGTTACTTGGGCTCAAAGTTGTGGGTTTAGGTGGGATTCTATTAGAGGGAATACAGTATATACAGTACCGGGAAAAGTATAACATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39160</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>161688</contig_pos>
        <strand>+</strand>
        <context>TGAACAACYA[A/C]AAAAAATTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTTTTTTTTCGAAATTTTGTGGAAATCAAGAAATTTGTTGAACAACAA</left_flank>
        <right_flank>AAAAAATTGTTCCTCTAATAAATATTTAACAGAAGCCCAGGAACTTTGAG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGGTGCTGCAGCTATCCAAGCCGGTCAAGTCGGGATCGCGACGGAGTGGGCGGAAATCCACAGATTTGCAGAATCTCCCAGGCGTCGAATCTTCAAAAGAGAGCCGTAATCACAGAGAAGGGGGAAGACGCGGAAGATGGAACAAAAAGGATTTTCCTCCCTCCCATCCAATTTCCGGATCGAATGTGGCACAGAAAAAGGAGGTCGTGTGTGAAAGAAAAAAATTTTTGGTGGTGGTGTGGAAAAGACTTATTGAATGGCTCATTAATTTTGTGCGAGCGCCGGGGGTGGTGGCGACGCACACACACACACACTTCACTACTCTGCTTATCATCTGTTTTCCACAAAGTTTAACTTGTGATAGTGTTTAATCGGCTCGTGAAAACAAAAAGCAAGCACCTCTCGGGAGGCTTGAGACGTTCTCATGTGTGTTCAGTTAGAGGTCCGGATTTTTTTTTTCGAAATTTTGTGGAAATCAAGAAATTTGTTGAACAACAACAAAAAATTGTTCCTCTAATAAATATTTAACAGAAGCCCAGGAACTTTGAGCTTGATTATCCCGGTTCCTATGAGAGATATCAAAAATTTGTCAACTGTGAAAATATAGGCGATATGATGATAAATGATTTGTCAGTTAACTAATTTTTGATGTCTTTCACAGGAATCGAGTTACTTGGGCTCAAAGTTGTGGGTTTAGGTGGGATTCTATTAGAGGGAATACAGTATATACAGTACCGGGAAAAGTATAACATATGTATTCTTACTTTTAAGTAGAGAAAGTGAATTTAGTTTTTTTTTTAAAAATAGTCTAGATTATTTTAGTTTGACTTCCCAAGTTTAAATTACAGTAATAAAAATGTTGATTGATTTATTTGCCATGTTTTTCGCCAAATTCCATTTTGACGAGATACCGTATTTGCAATTTGAGCTCGATTATCTCGATTCTTATGAGAGATTTTGAAAATTCGTCAACTGATAAACTGTTGATTACAATATCAC</canonical>
            <polymorphic>ACGGTGCTGCAGCTATCCAAGCCGGTCAAGTCGGGATCGCGACGGAGTGGGCGGAAATCCACAGATTTGCAGAATCTCCCAGGCGTCGAATCTTCAAAAGAGAGCCGTAATCACAGAGAAGGGGGAAGACGCGGAAGATGGAACAAAAAGGATTTTCCTCCCTCCCATCCAATTTCCGGATCGAATGTGGCACAGAAAAAGGAGGTCGTGTGTGAAAGAAAAAAATTTTTGGTGGTGGTGTGGAAAAGACTTATTGAATGGCTCATTAATTTTGTGCGAGCGCCGGGGGTGGTGGCGACGCACACACACACACACTTCACTACTCTGCTTATCATCTGTTTTCCACAAAGTTTAACTTGTGATAGTGTTTAATCGGCTCGTGAAAACAAAAAGCAAGCACCTCTCGGGAGGCTTGAGACGTTCTCATGTGTGTTCAGTTAGAGGTCCGGATTTTTTTTTTCGAAATTTTGTGGAAATCAAGAAATTTGTTGAACAACAAMAAAAAATTGTTCCTCTAATAAATATTTAACAGAAGCCCAGGAACTTTGAGCTTGATTATCCCGGTTCCTATGAGAGATATCAAAAATTTGTCAACTGTGAAAATATAGGCGATATGATGATAAATGATTTGTCAGTTAACTAATTTTTGATGTCTTTCACAGGAATCGAGTTACTTGGGCTCAAAGTTGTGGGTTTAGGTGGGATTCTATTAGAGGGAATACAGTATATACAGTACCGGGAAAAGTATAACATATGTATTCTTACTTTTAAGTAGAGAAAGTGAATTTAGTTTTTTTTTTAAAAATAGTCTAGATTATTTTAGTTTGACTTCCCAAGTTTAAATTACAGTAATAAAAATGTTGATTGATTTATTTGCCATGTTTTTCGCCAAATTCCATTTTGACGAGATACCGTATTTGCAATTTGAGCTCGATTATCTCGATTCTTATGAGAGATTTTGAAAATTCGTCAACTGATAAACTGTTGATTACAATATCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTAGAGGTCCGGATTTT</pcr_primer_p1>
		<pcr_primer_p2>ATATGTTATACTTTTCCCGGTACT</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>CAGTTAGAGGTCCGGATTTTTTTTTTCGAAATTTTGTGGAAATCAAGAAATTTGTTGAACAACAACAAAAAATTGTTCCTCTAATAAATATTTAACAGAAGCCCAGGAACTTTGAGCTTGATTATCCCGGTTCCTATGAGAGATATCAAAAATTTGTCAACTGTGAAAATATAGGCGATATGATGATAAATGATTTGTCAGTTAACTAATTTTTGATGTCTTTCACAGGAATCGAGTTACTTGGGCTCAAAGTTGTGGGTTTAGGTGGGATTCTATTAGAGGGAATACAGTATATACAGTACCGGGAAAAGTATAACATAT</canonical_amplicon>
		<polymorphic_amplicon>CAGTTAGAGGTCCGGATTTTTTTTTTCGAAATTTTGTGGAAATCAAGAAATTTGTTGAACAACAAMAAAAAATTGTTCCTCTAATAAATATTTAACAGAAGCCCAGGAACTTTGAGCTTGATTATCCCGGTTCCTATGAGAGATATCAAAAATTTGTCAACTGTGAAAATATAGGCGATATGATGATAAATGATTTGTCAGTTAACTAATTTTTGATGTCTTTCACAGGAATCGAGTTACTTGGGCTCAAAGTTGTGGGTTTAGGTGGGATTCTATTAGAGGGAATACAGTATATACAGTACCGGGAAAAGTATAACATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39161</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>161703</contig_pos>
        <strand></strand>
        <context>AATTGTTCCT[C/T]TAATAAATAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTGTGGAAATCAAGAAATTTGTTGAACAACAACAAAAAATTGTTCCT</left_flank>
        <right_flank>TAATAAATATTTAACAGAAGCCCAGGAACTTTGAGCTTGATTATCCCGGT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCAAGCCGGTCAAGTCGGGATCGCGACGGAGTGGGCGGAAATCCACAGATTTGCAGAATCTCCCAGGCGTCGAATCTTCAAAAGAGAGCCGTAATCACAGAGAAGGGGGAAGACGCGGAAGATGGAACAAAAAGGATTTTCCTCCCTCCCATCCAATTTCCGGATCGAATGTGGCACAGAAAAAGGAGGTCGTGTGTGAAAGAAAAAAATTTTTGGTGGTGGTGTGGAAAAGACTTATTGAATGGCTCATTAATTTTGTGCGAGCGCCGGGGGTGGTGGCGACGCACACACACACACACTTCACTACTCTGCTTATCATCTGTTTTCCACAAAGTTTAACTTGTGATAGTGTTTAATCGGCTCGTGAAAACAAAAAGCAAGCACCTCTCGGGAGGCTTGAGACGTTCTCATGTGTGTTCAGTTAGAGGTCCGGATTTTTTTTTTCGAAATTTTGTGGAAATCAAGAAATTTGTTGAACAACAACAAAAAATTGTTCCTCTAATAAATATTTAACAGAAGCCCAGGAACTTTGAGCTTGATTATCCCGGTTCCTATGAGAGATATCAAAAATTTGTCAACTGTGAAAATATAGGCGATATGATGATAAATGATTTGTCAGTTAACTAATTTTTGATGTCTTTCACAGGAATCGAGTTACTTGGGCTCAAAGTTGTGGGTTTAGGTGGGATTCTATTAGAGGGAATACAGTATATACAGTACCGGGAAAAGTATAACATATGTATTCTTACTTTTAAGTAGAGAAAGTGAATTTAGTTTTTTTTTTAAAAATAGTCTAGATTATTTTAGTTTGACTTCCCAAGTTTAAATTACAGTAATAAAAATGTTGATTGATTTATTTGCCATGTTTTTCGCCAAATTCCATTTTGACGAGATACCGTATTTGCAATTTGAGCTCGATTATCTCGATTCTTATGAGAGATTTTGAAAATTCGTCAACTGATAAACTGTTGATTACAATATCACCAATATTTTATCAGT</canonical>
            <polymorphic>TCCAAGCCGGTCAAGTCGGGATCGCGACGGAGTGGGCGGAAATCCACAGATTTGCAGAATCTCCCAGGCGTCGAATCTTCAAAAGAGAGCCGTAATCACAGAGAAGGGGGAAGACGCGGAAGATGGAACAAAAAGGATTTTCCTCCCTCCCATCCAATTTCCGGATCGAATGTGGCACAGAAAAAGGAGGTCGTGTGTGAAAGAAAAAAATTTTTGGTGGTGGTGTGGAAAAGACTTATTGAATGGCTCATTAATTTTGTGCGAGCGCCGGGGGTGGTGGCGACGCACACACACACACACTTCACTACTCTGCTTATCATCTGTTTTCCACAAAGTTTAACTTGTGATAGTGTTTAATCGGCTCGTGAAAACAAAAAGCAAGCACCTCTCGGGAGGCTTGAGACGTTCTCATGTGTGTTCAGTTAGAGGTCCGGATTTTTTTTTTCGAAATTTTGTGGAAATCAAGAAATTTGTTGAACAACAACAAAAAATTGTTCCTYTAATAAATATTTAACAGAAGCCCAGGAACTTTGAGCTTGATTATCCCGGTTCCTATGAGAGATATCAAAAATTTGTCAACTGTGAAAATATAGGCGATATGATGATAAATGATTTGTCAGTTAACTAATTTTTGATGTCTTTCACAGGAATCGAGTTACTTGGGCTCAAAGTTGTGGGTTTAGGTGGGATTCTATTAGAGGGAATACAGTATATACAGTACCGGGAAAAGTATAACATATGTATTCTTACTTTTAAGTAGAGAAAGTGAATTTAGTTTTTTTTTTAAAAATAGTCTAGATTATTTTAGTTTGACTTCCCAAGTTTAAATTACAGTAATAAAAATGTTGATTGATTTATTTGCCATGTTTTTCGCCAAATTCCATTTTGACGAGATACCGTATTTGCAATTTGAGCTCGATTATCTCGATTCTTATGAGAGATTTTGAAAATTCGTCAACTGATAAACTGTTGATTACAATATCACCAATATTTTATCAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAATTTTGTGGAAATCAAGA</pcr_primer_p1>
		<pcr_primer_p2>ATATGTTATACTTTTCCCGGTACT</pcr_primer_p2>
		<pcr_amplicon_size>294</pcr_amplicon_size>
		<canonical_amplicon>GAAATTTTGTGGAAATCAAGAAATTTGTTGAACAACAACAAAAAATTGTTCCTCTAATAAATATTTAACAGAAGCCCAGGAACTTTGAGCTTGATTATCCCGGTTCCTATGAGAGATATCAAAAATTTGTCAACTGTGAAAATATAGGCGATATGATGATAAATGATTTGTCAGTTAACTAATTTTTGATGTCTTTCACAGGAATCGAGTTACTTGGGCTCAAAGTTGTGGGTTTAGGTGGGATTCTATTAGAGGGAATACAGTATATACAGTACCGGGAAAAGTATAACATAT</canonical_amplicon>
		<polymorphic_amplicon>GAAATTTTGTGGAAATCAAGAAATTTGTTGAACAACAACAAAAAATTGTTCCTYTAATAAATATTTAACAGAAGCCCAGGAACTTTGAGCTTGATTATCCCGGTTCCTATGAGAGATATCAAAAATTTGTCAACTGTGAAAATATAGGCGATATGATGATAAATGATTTGTCAGTTAACTAATTTTTGATGTCTTTCACAGGAATCGAGTTACTTGGGCTCAAAGTTGTGGGTTTAGGTGGGATTCTATTAGAGGGAATACAGTATATACAGTACCGGGAAAAGTATAACATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39162</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>170332</contig_pos>
        <strand>+</strand>
        <context>ATTCGAGGAG[A/C]ATTCTGAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGCGTTGGAGTCGCTATCATAGGCCAGAAACTCCGTCAGAATTCGAGGAG</left_flank>
        <right_flank>ATTCTGAAATAGAATTTGAATCAATTTTTTGGAAACGAGAACTCACTTTG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGTTTTGTGTAGTGTTCTAATAAAATGTTGTAGTATATCTAATTCCAAATACAATCACAACAGAACAACAGGTTTCAATGAAAACACACAAAGCCACACACAAGTCTAGGACAAGTATTCCACAAGTCTTGCACAAACCTCCCACAAGTCTTAGCTAATACATATAATAATGTGCTCGGAGACTTATGCTAGACTTGTGGGAGGTCTCGCCAAGTATTGGCGCCGACAGCCGAGGGGATGGGTTGCGCCTTTTTCAAAGTTTACCCAAAATCGATCTTGGAATTTTCAATGATATCATTTTTACAATAAAAAATAACATGATGCAAAAACCAATACCTTTCAATTTGACTGTAAAGAGAGATGCGGATGACCCGGATCCAGAAACAGAAGAAAGTGGAGAGACCGGTGAAGGAGCAACTACATTGGAAGAGCGAGGAGCGTTCGGGGAAGCGTTGGAGTCGCTATCATAGGCCAGAAACTCCGTCAGAATTCGAGGAGAATTCTGAAATAGAATTTGAATCAATTTTTTGGAAACGAGAACTCACTTTGAGCTCAGACTCGGCGAGCCAGGAGTTCCAGATCACATGATCATATCCCTTCCACTTGATTAAGTACTCCTTTTTGTTTCCTATGGACCGACTCTTGATGATCGTGTCGATTTCATAATTTTGCTTGGATAAAGTGCGCGATGGATCGACGGTTTGGCGGTATTCGTTGATAACTTCGGCGTATTGCTGAAAAACGTTTGAATGCTAATTTCGATATATCACCGGCAGTATTGACGAAAATCGTTTTGGTAAAGCAGGACTTTTCAGAAATTATTCGGCGGAAATTGATAAGGAATTGGCTAACATCGAAATGAAAAGTGGAAATCGCACGTTTTCACCTTTAACTGTTGATCTACTGTAGAAACAAGAAAACGCGTTTTAGTACTACTTCTCATTTACCTACTCATTTTGAAAAATGATAATTTTTAAGTAGTAATGATATACGAAAGAA</canonical>
            <polymorphic>TCGTTTTGTGTAGTGTTCTAATAAAATGTTGTAGTATATCTAATTCCAAATACAATCACAACAGAACAACAGGTTTCAATGAAAACACACAAAGCCACACACAAGTCTAGGACAAGTATTCCACAAGTCTTGCACAAACCTCCCACAAGTCTTAGCTAATACATATAATAATGTGCTCGGAGACTTATGCTAGACTTGTGGGAGGTCTCGCCAAGTATTGGCGCCGACAGCCGAGGGGATGGGTTGCGCCTTTTTCAAAGTTTACCCAAAATCGATCTTGGAATTTTCAATGATATCATTTTTACAATAAAAAATAACATGATGCAAAAACCAATACCTTTCAATTTGACTGTAAAGAGAGATGCGGATGACCCGGATCCAGAAACAGAAGAAAGTGGAGAGACCGGTGAAGGAGCAACTACATTGGAAGAGCGAGGAGCGTTCGGGGAAGCGTTGGAGTCGCTATCATAGGCCAGAAACTCCGTCAGAATTCGAGGAGMATTCTGAAATAGAATTTGAATCAATTTTTTGGAAACGAGAACTCACTTTGAGCTCAGACTCGGCGAGCCAGGAGTTCCAGATCACATGATCATATCCCTTCCACTTGATTAAGTACTCCTTTTTGTTTCCTATGGACCGACTCTTGATGATCGTGTCGATTTCATAATTTTGCTTGGATAAAGTGCGCGATGGATCGACGGTTTGGCGGTATTCGTTGATAACTTCGGCGTATTGCTGAAAAACGTTTGAATGCTAATTTCGATATATCACCGGCAGTATTGACGAAAATCGTTTTGGTAAAGCAGGACTTTTCAGAAATTATTCGGCGGAAATTGATAAGGAATTGGCTAACATCGAAATGAAAAGTGGAAATCGCACGTTTTCACCTTTAACTGTTGATCTACTGTAGAAACAAGAAAACGCGTTTTAGTACTACTTCTCATTTACCTACTCATTTTGAAAAATGATAATTTTTAAGTAGTAATGATATACGAAAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>488 281 207 13 11</canonical_bands>
                <polymorphic_bands>488 281 207 24</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>501 488 11</canonical_bands>
                <polymorphic_bands>512 488</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>240 146 143 127 90 62 61 41 31 14 13 11 11 10</canonical_bands>
                <polymorphic_bands>240 146 143 127 90 62 61 41 31 24 14 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCCAGAAACAGAAGAAAGTG</pcr_primer_p1>
		<pcr_primer_p2>AAAAGGAGTACTTAATCAAGTGGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GATCCAGAAACAGAAGAAAGTGGAGAGACCGGTGAAGGAGCAACTACATTGGAAGAGCGAGGAGCGTTCGGGGAAGCGTTGGAGTCGCTATCATAGGCCAGAAACTCCGTCAGAATTCGAGGAGAATTCTGAAATAGAATTTGAATCAATTTTTTGGAAACGAGAACTCACTTTGAGCTCAGACTCGGCGAGCCAGGAGTTCCAGATCACATGATCATATCCCTTCCACTTGATTAAGTACTCCTTTT</canonical_amplicon>
		<polymorphic_amplicon>GATCCAGAAACAGAAGAAAGTGGAGAGACCGGTGAAGGAGCAACTACATTGGAAGAGCGAGGAGCGTTCGGGGAAGCGTTGGAGTCGCTATCATAGGCCAGAAACTCCGTCAGAATTCGAGGAGMATTCTGAAATAGAATTTGAATCAATTTTTTGGAAACGAGAACTCACTTTGAGCTCAGACTCGGCGAGCCAGGAGTTCCAGATCACATGATCATATCCCTTCCACTTGATTAAGTACTCCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39163</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>248395</contig_pos>
        <strand>+</strand>
        <context>TAAGAATGTG[A/G]GAAGCAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCCTGAAAATGGTCAAAACAAATAAAAACCATTTGAAAATAAGAATGTG</left_flank>
        <right_flank>GAAGCAAAAACTAAAATTTCAGTGTTCTTCCTGTTCTTCTCCCTATCTCT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACACATCCGGATACTTTATCAGTGGGAACAAGACTTGGGGTGTATGCTGCATTCGGTGTCACAGAAGGTAGATTTTTTTTTATACAGGACCAAGAAATACAAAAACGTTGATTTCAACCATTTGAAAAGGTCTGGAACTCACATTCAGCTATCAGGGGGTTCCTATCACTTCGAAAATATTAGAAAATGTAAAACAGACTCAGGTTTCAAAACTTGCATTCACAATTTTTTTTGAAAATTCTTAGCTTTCAGCTCTTTTCCGATTTCCAAAAGAAACCTGTTTTTTCACGTTTTCAGTACAACAAATTGGGGAAATTCAGAAGTCAGAATAGCTAAAAAACTAAGAATTTTCAAAAAATTCTGCAAATGCAAAGTTTTCAATCTAGATCTGTTTTACATCCTCTAAAAGTTTTCAAAGTGATCGGAAACTTGACAGCCGAGCTCCAGACTCCTGAAAATGGTCAAAACAAATAAAAACCATTTGAAAATAAGAATGTGGGAAGCAAAAACTAAAATTTCAGTGTTCTTCCTGTTCTTCTCCCTATCTCTCCTTCTGCTTGGAGGAGTCGCCGCTTCCAGAAATCTCCATAGACCATTGCTTCATAATGTGCTGAGAAACCCACTATCCTATTTTGATGTGACTCCTATTGGAAGAATTATCAACCGTCTCGCCAAAGACATGGAAGTTGTGGATCTCCGTTTGAGTAGCTCTTTCAGATTCCTTGTAATTTCGTTTATGAATATGATGCAGGTAAGAATCCTCAACCTCTTTTACAGTCACCTCAAAAGTCCAGACTGTCATCATTGTCACCTACACCACACCACTATTCATCGTGATTATTATTCCCGTTTATATAATCTACTATTTTGTGCTCAAGTACTCCATTAAGAGTACCCGTCAACTTCAAAGAATCGCTTCGTTAACTCGTTCTCCAATATTTTCGAATTTCTCGGAGACCCTTCAAGGAATTTCAACAGTTAGAGCGTTCCAGTGGAATG</canonical>
            <polymorphic>GACACATCCGGATACTTTATCAGTGGGAACAAGACTTGGGGTGTATGCTGCATTCGGTGTCACAGAAGGTAGATTTTTTTTTATACAGGACCAAGAAATACAAAAACGTTGATTTCAACCATTTGAAAAGGTCTGGAACTCACATTCAGCTATCAGGGGGTTCCTATCACTTCGAAAATATTAGAAAATGTAAAACAGACTCAGGTTTCAAAACTTGCATTCACAATTTTTTTTGAAAATTCTTAGCTTTCAGCTCTTTTCCGATTTCCAAAAGAAACCTGTTTTTTCACGTTTTCAGTACAACAAATTGGGGAAATTCAGAAGTCAGAATAGCTAAAAAACTAAGAATTTTCAAAAAATTCTGCAAATGCAAAGTTTTCAATCTAGATCTGTTTTACATCCTCTAAAAGTTTTCAAAGTGATCGGAAACTTGACAGCCGAGCTCCAGACTCCTGAAAATGGTCAAAACAAATAAAAACCATTTGAAAATAAGAATGTGRGAAGCAAAAACTAAAATTTCAGTGTTCTTCCTGTTCTTCTCCCTATCTCTCCTTCTGCTTGGAGGAGTCGCCGCTTCCAGAAATCTCCATAGACCATTGCTTCATAATGTGCTGAGAAACCCACTATCCTATTTTGATGTGACTCCTATTGGAAGAATTATCAACCGTCTCGCCAAAGACATGGAAGTTGTGGATCTCCGTTTGAGTAGCTCTTTCAGATTCCTTGTAATTTCGTTTATGAATATGATGCAGGTAAGAATCCTCAACCTCTTTTACAGTCACCTCAAAAGTCCAGACTGTCATCATTGTCACCTACACCACACCACTATTCATCGTGATTATTATTCCCGTTTATATAATCTACTATTTTGTGCTCAAGTACTCCATTAAGAGTACCCGTCAACTTCAAAGAATCGCTTCGTTAACTCGTTCTCCAATATTTTCGAATTTCTCGGAGACCCTTCAAGGAATTTCAACAGTTAGAGCGTTCCAGTGGAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGACCAAGAAATACAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GGAGAGATAGGGAGAAGAACA</pcr_primer_p2>
		<pcr_amplicon_size>467</pcr_amplicon_size>
		<canonical_amplicon>CAGGACCAAGAAATACAAAAACGTTGATTTCAACCATTTGAAAAGGTCTGGAACTCACATTCAGCTATCAGGGGGTTCCTATCACTTCGAAAATATTAGAAAATGTAAAACAGACTCAGGTTTCAAAACTTGCATTCACAATTTTTTTTGAAAATTCTTAGCTTTCAGCTCTTTTCCGATTTCCAAAAGAAACCTGTTTTTTCACGTTTTCAGTACAACAAATTGGGGAAATTCAGAAGTCAGAATAGCTAAAAAACTAAGAATTTTCAAAAAATTCTGCAAATGCAAAGTTTTCAATCTAGATCTGTTTTACATCCTCTAAAAGTTTTCAAAGTGATCGGAAACTTGACAGCCGAGCTCCAGACTCCTGAAAATGGTCAAAACAAATAAAAACCATTTGAAAATAAGAATGTGGGAAGCAAAAACTAAAATTTCAGTGTTCTTCCTGTTCTTCTCCCTATCTCTCC</canonical_amplicon>
		<polymorphic_amplicon>CAGGACCAAGAAATACAAAAACGTTGATTTCAACCATTTGAAAAGGTCTGGAACTCACATTCAGCTATCAGGGGGTTCCTATCACTTCGAAAATATTAGAAAATGTAAAACAGACTCAGGTTTCAAAACTTGCATTCACAATTTTTTTTGAAAATTCTTAGCTTTCAGCTCTTTTCCGATTTCCAAAAGAAACCTGTTTTTTCACGTTTTCAGTACAACAAATTGGGGAAATTCAGAAGTCAGAATAGCTAAAAAACTAAGAATTTTCAAAAAATTCTGCAAATGCAAAGTTTTCAATCTAGATCTGTTTTACATCCTCTAAAAGTTTTCAAAGTGATCGGAAACTTGACAGCCGAGCTCCAGACTCCTGAAAATGGTCAAAACAAATAAAAACCATTTGAAAATAAGAATGTGRGAAGCAAAAACTAAAATTTCAGTGTTCTTCCTGTTCTTCTCCCTATCTCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39164</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>248669</contig_pos>
        <strand>+</strand>
        <context>CAACCTCTTT[C/T]ACAGTCACCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGTAATTTCGTTTATGAATATGATGCAGGTAAGAATCCTCAACCTCTTT</left_flank>
        <right_flank>ACAGTCACCTCAAAAGTCCAGACTGTCATCATTGTCACCTACACCACACC</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACCTGTTTTTTCACGTTTTCAGTACAACAAATTGGGGAAATTCAGAAGTCAGAATAGCTAAAAAACTAAGAATTTTCAAAAAATTCTGCAAATGCAAAGTTTTCAATCTAGATCTGTTTTACATCCTCTAAAAGTTTTCAAAGTGATCGGAAACTTGACAGCCGAGCTCCAGACTCCTGAAAATGGTCAAAACAAATAAAAACCATTTGAAAATAAGAATGTGGGAAGCAAAAACTAAAATTTCAGTGTTCTTCCTGTTCTTCTCCCTATCTCTCCTTCTGCTTGGAGGAGTCGCCGCTTCCAGAAATCTCCATAGACCATTGCTTCATAATGTGCTGAGAAACCCACTATCCTATTTTGATGTGACTCCTATTGGAAGAATTATCAACCGTCTCGCCAAAGACATGGAAGTTGTGGATCTCCGTTTGAGTAGCTCTTTCAGATTCCTTGTAATTTCGTTTATGAATATGATGCAGGTAAGAATCCTCAACCTCTTTTACAGTCACCTCAAAAGTCCAGACTGTCATCATTGTCACCTACACCACACCACTATTCATCGTGATTATTATTCCCGTTTATATAATCTACTATTTTGTGCTCAAGTACTCCATTAAGAGTACCCGTCAACTTCAAAGAATCGCTTCGTTAACTCGTTCTCCAATATTTTCGAATTTCTCGGAGACCCTTCAAGGAATTTCAACAGTTAGAGCGTTCCAGTGGAATGATGAGTTTATCAGAAGAAATGATATGCATGTAAGCTAGCCGATTTTGAAATTTTCTATCTAAAATATTATTCTGTTTCAGCTCAACACCCATGTCAGATGCAACTACTACTCCCAAATGTCAAATCGCTGGTTGGCAATCCGTCTTGAACTTCTTGGAAACATTGTTATTTTTGGTAATTTCCAGGCTCTATTTTCATCATATCAATTTTCTTTTAGCTGCTTCCATGTTAGCCATCTTTGGGAAAGAATCAGGATTGACTGCTGGTATGCTCG</canonical>
            <polymorphic>AAACCTGTTTTTTCACGTTTTCAGTACAACAAATTGGGGAAATTCAGAAGTCAGAATAGCTAAAAAACTAAGAATTTTCAAAAAATTCTGCAAATGCAAAGTTTTCAATCTAGATCTGTTTTACATCCTCTAAAAGTTTTCAAAGTGATCGGAAACTTGACAGCCGAGCTCCAGACTCCTGAAAATGGTCAAAACAAATAAAAACCATTTGAAAATAAGAATGTGGGAAGCAAAAACTAAAATTTCAGTGTTCTTCCTGTTCTTCTCCCTATCTCTCCTTCTGCTTGGAGGAGTCGCCGCTTCCAGAAATCTCCATAGACCATTGCTTCATAATGTGCTGAGAAACCCACTATCCTATTTTGATGTGACTCCTATTGGAAGAATTATCAACCGTCTCGCCAAAGACATGGAAGTTGTGGATCTCCGTTTGAGTAGCTCTTTCAGATTCCTTGTAATTTCGTTTATGAATATGATGCAGGTAAGAATCCTCAACCTCTTTYACAGTCACCTCAAAAGTCCAGACTGTCATCATTGTCACCTACACCACACCACTATTCATCGTGATTATTATTCCCGTTTATATAATCTACTATTTTGTGCTCAAGTACTCCATTAAGAGTACCCGTCAACTTCAAAGAATCGCTTCGTTAACTCGTTCTCCAATATTTTCGAATTTCTCGGAGACCCTTCAAGGAATTTCAACAGTTAGAGCGTTCCAGTGGAATGATGAGTTTATCAGAAGAAATGATATGCATGTAAGCTAGCCGATTTTGAAATTTTCTATCTAAAATATTATTCTGTTTCAGCTCAACACCCATGTCAGATGCAACTACTACTCCCAAATGTCAAATCGCTGGTTGGCAATCCGTCTTGAACTTCTTGGAAACATTGTTATTTTTGGTAATTTCCAGGCTCTATTTTCATCATATCAATTTTCTTTTAGCTGCTTCCATGTTAGCCATCTTTGGGAAAGAATCAGGATTGACTGCTGGTATGCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGACTCCTATTGGAAGAATTA</pcr_primer_p1>
		<pcr_primer_p2>ATGGAGTACTTGAGCACAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTGACTCCTATTGGAAGAATTATCAACCGTCTCGCCAAAGACATGGAAGTTGTGGATCTCCGTTTGAGTAGCTCTTTCAGATTCCTTGTAATTTCGTTTATGAATATGATGCAGGTAAGAATCCTCAACCTCTTTTACAGTCACCTCAAAAGTCCAGACTGTCATCATTGTCACCTACACCACACCACTATTCATCGTGATTATTATTCCCGTTTATATAATCTACTATTTTGTGCTCAAGTACTCCAT</canonical_amplicon>
		<polymorphic_amplicon>TGTGACTCCTATTGGAAGAATTATCAACCGTCTCGCCAAAGACATGGAAGTTGTGGATCTCCGTTTGAGTAGCTCTTTCAGATTCCTTGTAATTTCGTTTATGAATATGATGCAGGTAAGAATCCTCAACCTCTTTYACAGTCACCTCAAAAGTCCAGACTGTCATCATTGTCACCTACACCACACCACTATTCATCGTGATTATTATTCCCGTTTATATAATCTACTATTTTGTGCTCAAGTACTCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39165</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>248937</contig_pos>
        <strand>+</strand>
        <context>AAGCTAGCYG[A/G]TTTTGAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTGGAATGATGAGTTTATCAGAAGAAATGATATGCATGTAAGCTAGCCG</left_flank>
        <right_flank>TTTTGAAATTTTCTATCTAAAATATTATTCTGTTTCAGCTCAACACCCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTATCTCTCCTTCTGCTTGGAGGAGTCGCCGCTTCCAGAAATCTCCATAGACCATTGCTTCATAATGTGCTGAGAAACCCACTATCCTATTTTGATGTGACTCCTATTGGAAGAATTATCAACCGTCTCGCCAAAGACATGGAAGTTGTGGATCTCCGTTTGAGTAGCTCTTTCAGATTCCTTGTAATTTCGTTTATGAATATGATGCAGGTAAGAATCCTCAACCTCTTTTACAGTCACCTCAAAAGTCCAGACTGTCATCATTGTCACCTACACCACACCACTATTCATCGTGATTATTATTCCCGTTTATATAATCTACTATTTTGTGCTCAAGTACTCCATTAAGAGTACCCGTCAACTTCAAAGAATCGCTTCGTTAACTCGTTCTCCAATATTTTCGAATTTCTCGGAGACCCTTCAAGGAATTTCAACAGTTAGAGCGTTCCAGTGGAATGATGAGTTTATCAGAAGAAATGATATGCATGTAAGCTAGCCGATTTTGAAATTTTCTATCTAAAATATTATTCTGTTTCAGCTCAACACCCATGTCAGATGCAACTACTACTCCCAAATGTCAAATCGCTGGTTGGCAATCCGTCTTGAACTTCTTGGAAACATTGTTATTTTTGGTAATTTCCAGGCTCTATTTTCATCATATCAATTTTCTTTTAGCTGCTTCCATGTTAGCCATCTTTGGGAAAGAATCAGGATTGACTGCTGGTATGCTCGGTCTATCAGTGTCCTACAGTTTGAATGTAAGTTGCAAAAATTTTTTGAATAAAAAAAAATATATTTCAGATTACATTCATGTTGAATATGTTTGTTAGAACCATCAATGACGTAGAGACTAATGTGGTGTCAGTGGAAAGAATTGATGAGTACAGTAAGACCAAGAGTGAGGTAAGCAATTTCAATTGATTTGTTCAAAATACAGTCAGCTCTATTTCAGGCTGAGTGGCGTATGGAAGGATATGTGCTCCCGCAATCCTGGCCTATC</canonical>
            <polymorphic>CTATCTCTCCTTCTGCTTGGAGGAGTCGCCGCTTCCAGAAATCTCCATAGACCATTGCTTCATAATGTGCTGAGAAACCCACTATCCTATTTTGATGTGACTCCTATTGGAAGAATTATCAACCGTCTCGCCAAAGACATGGAAGTTGTGGATCTCCGTTTGAGTAGCTCTTTCAGATTCCTTGTAATTTCGTTTATGAATATGATGCAGGTAAGAATCCTCAACCTCTTTTACAGTCACCTCAAAAGTCCAGACTGTCATCATTGTCACCTACACCACACCACTATTCATCGTGATTATTATTCCCGTTTATATAATCTACTATTTTGTGCTCAAGTACTCCATTAAGAGTACCCGTCAACTTCAAAGAATCGCTTCGTTAACTCGTTCTCCAATATTTTCGAATTTCTCGGAGACCCTTCAAGGAATTTCAACAGTTAGAGCGTTCCAGTGGAATGATGAGTTTATCAGAAGAAATGATATGCATGTAAGCTAGCCGRTTTTGAAATTTTCTATCTAAAATATTATTCTGTTTCAGCTCAACACCCATGTCAGATGCAACTACTACTCCCAAATGTCAAATCGCTGGTTGGCAATCCGTCTTGAACTTCTTGGAAACATTGTTATTTTTGGTAATTTCCAGGCTCTATTTTCATCATATCAATTTTCTTTTAGCTGCTTCCATGTTAGCCATCTTTGGGAAAGAATCAGGATTGACTGCTGGTATGCTCGGTCTATCAGTGTCCTACAGTTTGAATGTAAGTTGCAAAAATTTTTTGAATAAAAAAAAATATATTTCAGATTACATTCATGTTGAATATGTTTGTTAGAACCATCAATGACGTAGAGACTAATGTGGTGTCAGTGGAAAGAATTGATGAGTACAGTAAGACCAAGAGTGAGGTAAGCAATTTCAATTGATTTGTTCAAAATACAGTCAGCTCTATTTCAGGCTGAGTGGCGTATGGAAGGATATGTGCTCCCGCAATCCTGGCCTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAACTCGTTCTCCAATATTTTC</pcr_primer_p1>
		<pcr_primer_p2>AAATAACAATGTTTCCAAGAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAACTCGTTCTCCAATATTTTCGAATTTCTCGGAGACCCTTCAAGGAATTTCAACAGTTAGAGCGTTCCAGTGGAATGATGAGTTTATCAGAAGAAATGATATGCATGTAAGCTAGCCGATTTTGAAATTTTCTATCTAAAATATTATTCTGTTTCAGCTCAACACCCATGTCAGATGCAACTACTACTCCCAAATGTCAAATCGCTGGTTGGCAATCCGTCTTGAACTTCTTGGAAACATTGTTATTT</canonical_amplicon>
		<polymorphic_amplicon>TTAACTCGTTCTCCAATATTTTCGAATTTCTCGGAGACCCTTCAAGGAATTTCAACAGTTAGAGCGTTCCAGTGGAATGATGAGTTTATCAGAAGAAATGATATGCATGTAAGCTAGCCGRTTTTGAAATTTTCTATCTAAAATATTATTCTGTTTCAGCTCAACACCCATGTCAGATGCAACTACTACTCCCAAATGTCAAATCGCTGGTTGGCAATCCGTCTTGAACTTCTTGGAAACATTGTTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39166</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>248952</contig_pos>
        <strand>+</strand>
        <context>GAAATTTTCT[A/G]TCTAAAATAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATCAGAAGAAATGATATGCATGTAAGCTAGCCGATTTTGAAATTTTCT</left_flank>
        <right_flank>TCTAAAATATTATTCTGTTTCAGCTCAACACCCATGTCAGATGCAACTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGGAGGAGTCGCCGCTTCCAGAAATCTCCATAGACCATTGCTTCATAATGTGCTGAGAAACCCACTATCCTATTTTGATGTGACTCCTATTGGAAGAATTATCAACCGTCTCGCCAAAGACATGGAAGTTGTGGATCTCCGTTTGAGTAGCTCTTTCAGATTCCTTGTAATTTCGTTTATGAATATGATGCAGGTAAGAATCCTCAACCTCTTTTACAGTCACCTCAAAAGTCCAGACTGTCATCATTGTCACCTACACCACACCACTATTCATCGTGATTATTATTCCCGTTTATATAATCTACTATTTTGTGCTCAAGTACTCCATTAAGAGTACCCGTCAACTTCAAAGAATCGCTTCGTTAACTCGTTCTCCAATATTTTCGAATTTCTCGGAGACCCTTCAAGGAATTTCAACAGTTAGAGCGTTCCAGTGGAATGATGAGTTTATCAGAAGAAATGATATGCATGTAAGCTAGCCGATTTTGAAATTTTCTATCTAAAATATTATTCTGTTTCAGCTCAACACCCATGTCAGATGCAACTACTACTCCCAAATGTCAAATCGCTGGTTGGCAATCCGTCTTGAACTTCTTGGAAACATTGTTATTTTTGGTAATTTCCAGGCTCTATTTTCATCATATCAATTTTCTTTTAGCTGCTTCCATGTTAGCCATCTTTGGGAAAGAATCAGGATTGACTGCTGGTATGCTCGGTCTATCAGTGTCCTACAGTTTGAATGTAAGTTGCAAAAATTTTTTGAATAAAAAAAAATATATTTCAGATTACATTCATGTTGAATATGTTTGTTAGAACCATCAATGACGTAGAGACTAATGTGGTGTCAGTGGAAAGAATTGATGAGTACAGTAAGACCAAGAGTGAGGTAAGCAATTTCAATTGATTTGTTCAAAATACAGTCAGCTCTATTTCAGGCTGAGTGGCGTATGGAAGGATATGTGCTCCCGCAATCCTGGCCTATCGGAGGTGCTGTGAAT</canonical>
            <polymorphic>CTTGGAGGAGTCGCCGCTTCCAGAAATCTCCATAGACCATTGCTTCATAATGTGCTGAGAAACCCACTATCCTATTTTGATGTGACTCCTATTGGAAGAATTATCAACCGTCTCGCCAAAGACATGGAAGTTGTGGATCTCCGTTTGAGTAGCTCTTTCAGATTCCTTGTAATTTCGTTTATGAATATGATGCAGGTAAGAATCCTCAACCTCTTTTACAGTCACCTCAAAAGTCCAGACTGTCATCATTGTCACCTACACCACACCACTATTCATCGTGATTATTATTCCCGTTTATATAATCTACTATTTTGTGCTCAAGTACTCCATTAAGAGTACCCGTCAACTTCAAAGAATCGCTTCGTTAACTCGTTCTCCAATATTTTCGAATTTCTCGGAGACCCTTCAAGGAATTTCAACAGTTAGAGCGTTCCAGTGGAATGATGAGTTTATCAGAAGAAATGATATGCATGTAAGCTAGCCGATTTTGAAATTTTCTRTCTAAAATATTATTCTGTTTCAGCTCAACACCCATGTCAGATGCAACTACTACTCCCAAATGTCAAATCGCTGGTTGGCAATCCGTCTTGAACTTCTTGGAAACATTGTTATTTTTGGTAATTTCCAGGCTCTATTTTCATCATATCAATTTTCTTTTAGCTGCTTCCATGTTAGCCATCTTTGGGAAAGAATCAGGATTGACTGCTGGTATGCTCGGTCTATCAGTGTCCTACAGTTTGAATGTAAGTTGCAAAAATTTTTTGAATAAAAAAAAATATATTTCAGATTACATTCATGTTGAATATGTTTGTTAGAACCATCAATGACGTAGAGACTAATGTGGTGTCAGTGGAAAGAATTGATGAGTACAGTAAGACCAAGAGTGAGGTAAGCAATTTCAATTGATTTGTTCAAAATACAGTCAGCTCTATTTCAGGCTGAGTGGCGTATGGAAGGATATGTGCTCCCGCAATCCTGGCCTATCGGAGGTGCTGTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAACTCGTTCTCCAATATTTTC</pcr_primer_p1>
		<pcr_primer_p2>AAATAACAATGTTTCCAAGAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAACTCGTTCTCCAATATTTTCGAATTTCTCGGAGACCCTTCAAGGAATTTCAACAGTTAGAGCGTTCCAGTGGAATGATGAGTTTATCAGAAGAAATGATATGCATGTAAGCTAGCCGATTTTGAAATTTTCTATCTAAAATATTATTCTGTTTCAGCTCAACACCCATGTCAGATGCAACTACTACTCCCAAATGTCAAATCGCTGGTTGGCAATCCGTCTTGAACTTCTTGGAAACATTGTTATTT</canonical_amplicon>
		<polymorphic_amplicon>TTAACTCGTTCTCCAATATTTTCGAATTTCTCGGAGACCCTTCAAGGAATTTCAACAGTTAGAGCGTTCCAGTGGAATGATGAGTTTATCAGAAGAAATGATATGCATGTAAGCTAGCCGATTTTGAAATTTTCTRTCTAAAATATTATTCTGTTTCAGCTCAACACCCATGTCAGATGCAACTACTACTCCCAAATGTCAAATCGCTGGTTGGCAATCCGTCTTGAACTTCTTGGAAACATTGTTATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39167</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>250139</contig_pos>
        <strand>+</strand>
        <context>AAAAGTTTGC[A/G]GATTCCACGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GACAACAGAACCGATGCGATGGTTCAAGCGACGATACGTGAAAAGTTTGC</left_flank>
        <right_flank>GATTCCACGATCATCACAATTGCTCATAGACTGCACACTATTATGGACTA</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTCCGTATTGTGGAAGCTGCAGAGGGGGATATTTCGATTGATCAAACAATTACTTCTCGTATTGGACTTCATGATTTGAGGGAGAAGTTGACTATCATCCCACAAGAAAATGTGTTGTTCGCTAATACATTGAGGTTTGCTTATAAATATTAGAATTTTTTACATATTAAGAATTCAGGTTTAATATTGATCCAAAGAGTCAGTTTAATGACCAACAACTTTGGGCAGCGCTTGAGAATTCAAATTTGAAGGCTCATGTAGAGACGTTGCCACAGAAGTTGGAAAGTCCAGTTGCGGAAGGAGGAGAAAACTTTAGGTAAGCACGAAAATTACAAACAAATCCAAATTTCGAATTTAGTGTTGGTCAACGGCAACTCTTGTGTCTCACACGCGCATTACTTCGAAAATCCAAAGTGTTGGTTCTGGATGAAGCCACTGCTGGAATCGACAACAGAACCGATGCGATGGTTCAAGCGACGATACGTGAAAAGTTTGCGGATTCCACGATCATCACAATTGCTCATAGACTGCACACTATTATGGACTATGATCGAATTATTGTGATGGAAGCTGGACGAATTGTGGAGGATGGTATTCCTGGAGAATTACTCAAAAACAAAAACTCAAAATTCTATGGTCTCGCTAAATCAGCTAAAATTGTTGGTTGATTGTTAGAAAGTTGTAATAAAATTGTTTTTATTAAATTAGTAAAGCAAAAATTAGACGGATGTTGAAGAGGTCCCCCAGAACCAAGTTCCGTTCGTCCATTGATACGCACAAGCAAACGTGTTATACTGAAAATTGCTATTGAGCTGCCATAAATGGGAAGTTGTATTGCAAGTGATATTTCCGTATATGGTGGTGGCCATTTCTGGAAAAGCCTGAAAATTACAGAAAACCATAAGAGAACCAAACGTGTTAGGAAATTGAAGCCTTGAATATTAGTGAACACAGGCAAATATCTATGAGCCCTGTTACGAATATCCACTAATTTCAG</canonical>
            <polymorphic>CTTTTCCGTATTGTGGAAGCTGCAGAGGGGGATATTTCGATTGATCAAACAATTACTTCTCGTATTGGACTTCATGATTTGAGGGAGAAGTTGACTATCATCCCACAAGAAAATGTGTTGTTCGCTAATACATTGAGGTTTGCTTATAAATATTAGAATTTTTTACATATTAAGAATTCAGGTTTAATATTGATCCAAAGAGTCAGTTTAATGACCAACAACTTTGGGCAGCGCTTGAGAATTCAAATTTGAAGGCTCATGTAGAGACGTTGCCACAGAAGTTGGAAAGTCCAGTTGCGGAAGGAGGAGAAAACTTTAGGTAAGCACGAAAATTACAAACAAATCCAAATTTCGAATTTAGTGTTGGTCAACGGCAACTCTTGTGTCTCACACGCGCATTACTTCGAAAATCCAAAGTGTTGGTTCTGGATGAAGCCACTGCTGGAATCGACAACAGAACCGATGCGATGGTTCAAGCGACGATACGTGAAAAGTTTGCRGATTCCACGATCATCACAATTGCTCATAGACTGCACACTATTATGGACTATGATCGAATTATTGTGATGGAAGCTGGACGAATTGTGGAGGATGGTATTCCTGGAGAATTACTCAAAAACAAAAACTCAAAATTCTATGGTCTCGCTAAATCAGCTAAAATTGTTGGTTGATTGTTAGAAAGTTGTAATAAAATTGTTTTTATTAAATTAGTAAAGCAAAAATTAGACGGATGTTGAAGAGGTCCCCCAGAACCAAGTTCCGTTCGTCCATTGATACGCACAAGCAAACGTGTTATACTGAAAATTGCTATTGAGCTGCCATAAATGGGAAGTTGTATTGCAAGTGATATTTCCGTATATGGTGGTGGCCATTTCTGGAAAAGCCTGAAAATTACAGAAAACCATAAGAGAACCAAACGTGTTAGGAAATTGAAGCCTTGAATATTAGTGAACACAGGCAAATATCTATGAGCCCTGTTACGAATATCCACTAATTTCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTACTTCGAAAATCCAAAGTGT</pcr_primer_p1>
		<pcr_primer_p2>GAATTTTGAGTTTTTGTTTTTGA</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>ATTACTTCGAAAATCCAAAGTGTTGGTTCTGGATGAAGCCACTGCTGGAATCGACAACAGAACCGATGCGATGGTTCAAGCGACGATACGTGAAAAGTTTGCGGATTCCACGATCATCACAATTGCTCATAGACTGCACACTATTATGGACTATGATCGAATTATTGTGATGGAAGCTGGACGAATTGTGGAGGATGGTATTCCTGGAGAATTACTCAAAAACAAAAACTCAAAATTC</canonical_amplicon>
		<polymorphic_amplicon>ATTACTTCGAAAATCCAAAGTGTTGGTTCTGGATGAAGCCACTGCTGGAATCGACAACAGAACCGATGCGATGGTTCAAGCGACGATACGTGAAAAGTTTGCRGATTCCACGATCATCACAATTGCTCATAGACTGCACACTATTATGGACTATGATCGAATTATTGTGATGGAAGCTGGACGAATTGTGGAGGATGGTATTCCTGGAGAATTACTCAAAAACAAAAACTCAAAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39168</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>253395</contig_pos>
        <strand>+</strand>
        <context>TTAGTACTCG[A/G]CCCCCCCCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTCCGGTAGCGGCGCAATCGGTAGCGGCGCCGCGCATTTAGTACTCG</left_flank>
        <right_flank>CCCCCCCCCATGAGTTCAACTCCTTGAGGAACGTATATAACCGTAATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCTTACAGTATTGGAATAGTAGGAATAATGATGAGTAACGAGGTTGACAGACTTACTAGACTGAATTAGACTGAGTAATGTAGGCCAGAAACTGTTTTGTGAGTGTGTGCGCCTTTAATCCCTTCGTGGCGAGACCCGTACGATAGGGCGCGCTTGCACGAAGAAAGGAGAAAAAGGCGGGGGAATTTGAATATGAGAAAACAATAGAAAGACTGATAAACAAAGATAAATAATGAGAATGAAGTGGGAAATAGGAAGATTTCTGAGGAATAAGCACAGTGGGCTGGGCCTAGAGGTCCTCAGAATATCTTAAAGTTGGCGAGTCGGCGGATAACCACGTGGACTCGTCAACAGTTAGGGTATGCATTCTACCATAACCGTGTACAACGCTTTCCGTCACTCTGCATACATCGGACGACCCGCATCTATGTTCATTGCCCGCTCTAGTTTTTTCCGGTAGCGGCGCAATCGGTAGCGGCGCCGCGCATTTAGTACTCGCCCCCCCCCCATGAGTTCAACTCCTTGAGGAACGTATATAACCGTAATTTTGCAAAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACAATGTTTGTTTTTTGCTTTTGTCCATGACACTTGAGCTCATGAAAAATATATGACAAACTAATAAAAATTCTGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCAGCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTCAGGAAATGAAGGAGAGAAAATAAATGTTTAGTGAACCATGAACAGAGCTTGGCAAACTTTTTGATAGAAAATGTGTGAAACCCGGTGAGGGT</canonical>
            <polymorphic>TTCTTACAGTATTGGAATAGTAGGAATAATGATGAGTAACGAGGTTGACAGACTTACTAGACTGAATTAGACTGAGTAATGTAGGCCAGAAACTGTTTTGTGAGTGTGTGCGCCTTTAATCCCTTCGTGGCGAGACCCGTACGATAGGGCGCGCTTGCACGAAGAAAGGAGAAAAAGGCGGGGGAATTTGAATATGAGAAAACAATAGAAAGACTGATAAACAAAGATAAATAATGAGAATGAAGTGGGAAATAGGAAGATTTCTGAGGAATAAGCACAGTGGGCTGGGCCTAGAGGTCCTCAGAATATCTTAAAGTTGGCGAGTCGGCGGATAACCACGTGGACTCGTCAACAGTTAGGGTATGCATTCTACCATAACCGTGTACAACGCTTTCCGTCACTCTGCATACATCGGACGACCCGCATCTATGTTCATTGCCCGCTCTAGTTTTTTCCGGTAGCGGCGCAATCGGTAGCGGCGCCGCGCATTTAGTACTCGRCCCCCCCCCATGAGTTCAACTCCTTGAGGAACGTATATAACCGTAATTTTGCAAAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACAATGTTTGTTTTTTGCTTTTGTCCATGACACTTGAGCTCATGAAAAATATATGACAAACTAATAAAAATTCTGTCTTTGATATACAGGGTTACGTAAACGTACTTGGGTCCATGATAATGCACAACAATTTTTCTGCCCCATCTTCTGTCCAAACGAGTTGTTTCTTTATTGCTGACCTACTTTGCAGCTCAAACTTTCAGCCTTTATTGAATAATTTATAGCAAAAGTTCAATTATAATATTTTTTCCGCAAAAGCAAAGCGTTCAGAGATCAAATCGGGGCCTAAAGCGGTGCATAATGATCTGAAAAGGATGAGTCAGGAAATGAAGGAGAGAAAATAAATGTTTAGTGAACCATGAACAGAGCTTGGCAAACTTTTTGATAGAAAATGTGTGAAACCCGGTGAGGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTCGTCAACAGTTAGGGTAT</pcr_primer_p1>
		<pcr_primer_p2>TGTTTAAAGGTAAGGGGACAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GACTCGTCAACAGTTAGGGTATGCATTCTACCATAACCGTGTACAACGCTTTCCGTCACTCTGCATACATCGGACGACCCGCATCTATGTTCATTGCCCGCTCTAGTTTTTTCCGGTAGCGGCGCAATCGGTAGCGGCGCCGCGCATTTAGTACTCGCCCCCCCCCCATGAGTTCAACTCCTTGAGGAACGTATATAACCGTAATTTTGCAAAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACA</canonical_amplicon>
		<polymorphic_amplicon>GACTCGTCAACAGTTAGGGTATGCATTCTACCATAACCGTGTACAACGCTTTCCGTCACTCTGCATACATCGGACGACCCGCATCTATGTTCATTGCCCGCTCTAGTTTTTTCCGGTAGCGGCGCAATCGGTAGCGGCGCCGCGCATTTAGTACTCGRCCCCCCCCCATGAGTTCAACTCCTTGAGGAACGTATATAACCGTAATTTTGCAAAAAATTATTTTTCTCATGTCCCCTTACCTTTAAACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39169</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>257150</contig_pos>
        <strand>+</strand>
        <context>AACCACCCAG[A/G]AACATTGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGTGAAAAGGAAAAAAAAAGAAAAAAGATTGAGTTATTTTAACCACCCAG</left_flank>
        <right_flank>AACATTGTTTAAGAATATACGAAAAGAAGAAGTCCTGCAAAAAAGGAACG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGTATAGCATCCGGGGAGCAGAATATGAGATTTCCAAGGTCAGCGATCGCCAGATTGAGGAGGAATTGGTTCACAGAAGAGCTCATTAGCTTACGATCCATGATTATTACAAAAATTATGAAGACATTGCCAATAACTCCAGAGCAGATGATGATCATGAAGACAAGGCCAAACACGATGAAGTACAGTTTTGGGTGGCATGAGAAACAGGATGGTTCGGAAGCCAAGACGCTCATAACGGTGGTGGTTTGCTCGATGAGGTTGGTGATGTTTCCAGAGTTCAGAACTTCTACAGACTTCTCTATGACACTTGTCATGTTGGCAGGATCCGCGATCATGGTCTCCAAAGTTGACTTCGCTTGACTATGGCACTATAAAGATGTTAGAATTCATTAGAAGAAGGAAGTACAAGTACTTCGGAACACAATGAAGAAGAAAAATCAAATGCGTGAAAAGGAAAAAAAAAGAAAAAAGATTGAGTTATTTTAACCACCCAGAAACATTGTTTAAGAATATACGAAAAGAAGAAGTCCTGCAAAAAAGGAACGTTTGCCCTTTTTAAAAATGTTCATAGGGTTTCCCTATAATTAGATATTTGGATAACAGCAGCAGAATTAAAAAATAAGGAAAAAAACTAGGATTTTATCCGATTTCCACACTACTAACAATAACACTTTTTCCTTCACTAAGAATAATAGGAGACGACCAAAAGTGGGCGGAGCCTTGAATGGAGAGCAAGGCGTTTTGTGCATTCGGAAAAAAAAACGAAGCGGTTACGCGCGGGGCTAGGCAAAAGCGAAAAAAAGAAACGTGCATCAGGAATTGGGCGGGAGCAGCACGAAATGAATAAGAATTTCGGAAATTTGCTTGGCCGATCATCTTGATGAGTGTTCCGAAAAAAGTTTAGCAAGAAGAAGAGAGAAGAAGAGAGAGTGATGAGTAGCTGGTTGAACTAAAAACAGAAATGAAATAGGGTTGTGGTGGTGGTCCAGATTGGA</canonical>
            <polymorphic>CTAGTATAGCATCCGGGGAGCAGAATATGAGATTTCCAAGGTCAGCGATCGCCAGATTGAGGAGGAATTGGTTCACAGAAGAGCTCATTAGCTTACGATCCATGATTATTACAAAAATTATGAAGACATTGCCAATAACTCCAGAGCAGATGATGATCATGAAGACAAGGCCAAACACGATGAAGTACAGTTTTGGGTGGCATGAGAAACAGGATGGTTCGGAAGCCAAGACGCTCATAACGGTGGTGGTTTGCTCGATGAGGTTGGTGATGTTTCCAGAGTTCAGAACTTCTACAGACTTCTCTATGACACTTGTCATGTTGGCAGGATCCGCGATCATGGTCTCCAAAGTTGACTTCGCTTGACTATGGCACTATAAAGATGTTAGAATTCATTAGAAGAAGGAAGTACAAGTACTTCGGAACACAATGAAGAAGAAAAATCAAATGCGTGAAAAGGAAAAAAAAAGAAAAAAGATTGAGTTATTTTAACCACCCAGRAACATTGTTTAAGAATATACGAAAAGAAGAAGTCCTGCAAAAAAGGAACGTTTGCCCTTTTTAAAAATGTTCATAGGGTTTCCCTATAATTAGATATTTGGATAACAGCAGCAGAATTAAAAAATAAGGAAAAAAACTAGGATTTTATCCGATTTCCACACTACTAACAATAACACTTTTTCCTTCACTAAGAATAATAGGAGACGACCAAAAGTGGGCGGAGCCTTGAATGGAGAGCAAGGCGTTTTGTGCATTCGGAAAAAAAAACGAAGCGGTTACGCGCGGGGCTAGGCAAAAGCGAAAAAAAGAAACGTGCATCAGGAATTGGGCGGGAGCAGCACGAAATGAATAAGAATTTCGGAAATTTGCTTGGCCGATCATCTTGATGAGTGTTCCGAAAAAAGTTTAGCAAGAAGAAGAGAGAAGAAGAGAGAGTGATGAGTAGCTGGTTGAACTAAAAACAGAAATGAAATAGGGTTGTGGTGGTGGTCCAGATTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACACAATGAAGAAGAAAAATC</pcr_primer_p1>
		<pcr_primer_p2>GTTAGTAGTGTGGAAATCGGATA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GAACACAATGAAGAAGAAAAATCAAATGCGTGAAAAGGAAAAAAAAAGAAAAAAGATTGAGTTATTTTAACCACCCAGAAACATTGTTTAAGAATATACGAAAAGAAGAAGTCCTGCAAAAAAGGAACGTTTGCCCTTTTTAAAAATGTTCATAGGGTTTCCCTATAATTAGATATTTGGATAACAGCAGCAGAATTAAAAAATAAGGAAAAAAACTAGGATTTTATCCGATTTCCACACTACTAAC</canonical_amplicon>
		<polymorphic_amplicon>GAACACAATGAAGAAGAAAAATCAAATGCGTGAAAAGGAAAAAAAAAGAAAAAAGATTGAGTTATTTTAACCACCCAGRAACATTGTTTAAGAATATACGAAAAGAAGAAGTCCTGCAAAAAAGGAACGTTTGCCCTTTTTAAAAATGTTCATAGGGTTTCCCTATAATTAGATATTTGGATAACAGCAGCAGAATTAAAAAATAAGGAAAAAAACTAGGATTTTATCCGATTTCCACACTACTAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39170</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>257511</contig_pos>
        <strand>+</strand>
        <context>AAGAATTTYG[C/T]AAATTTGCTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGTGCATCAGGAATTGGGCGGGAGCAGCACGAAATGAATAAGAATTTCG</left_flank>
        <right_flank>AAATTTGCTTGGCCGATCATCTTGATGAGTGTTCCGAAAAAAGTTTAGCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGACTATGGCACTATAAAGATGTTAGAATTCATTAGAAGAAGGAAGTACAAGTACTTCGGAACACAATGAAGAAGAAAAATCAAATGCGTGAAAAGGAAAAAAAAAGAAAAAAGATTGAGTTATTTTAACCACCCAGAAACATTGTTTAAGAATATACGAAAAGAAGAAGTCCTGCAAAAAAGGAACGTTTGCCCTTTTTAAAAATGTTCATAGGGTTTCCCTATAATTAGATATTTGGATAACAGCAGCAGAATTAAAAAATAAGGAAAAAAACTAGGATTTTATCCGATTTCCACACTACTAACAATAACACTTTTTCCTTCACTAAGAATAATAGGAGACGACCAAAAGTGGGCGGAGCCTTGAATGGAGAGCAAGGCGTTTTGTGCATTCGGAAAAAAAAACGAAGCGGTTACGCGCGGGGCTAGGCAAAAGCGAAAAAAAGAAACGTGCATCAGGAATTGGGCGGGAGCAGCACGAAATGAATAAGAATTTCGGAAATTTGCTTGGCCGATCATCTTGATGAGTGTTCCGAAAAAAGTTTAGCAAGAAGAAGAGAGAAGAAGAGAGAGTGATGAGTAGCTGGTTGAACTAAAAACAGAAATGAAATAGGGTTGTGGTGGTGGTCCAGATTGGAAAAAGAAGGGATCTTTTTAGGGGTTTCAGTATCCTTTGTCACAGAAACTCATCTCTTTTAAGTGTTTTTCCAGAGAGAAATGTTTTTCGGACGACTCTAAGTGACCACAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATT</canonical>
            <polymorphic>TTGACTATGGCACTATAAAGATGTTAGAATTCATTAGAAGAAGGAAGTACAAGTACTTCGGAACACAATGAAGAAGAAAAATCAAATGCGTGAAAAGGAAAAAAAAAGAAAAAAGATTGAGTTATTTTAACCACCCAGAAACATTGTTTAAGAATATACGAAAAGAAGAAGTCCTGCAAAAAAGGAACGTTTGCCCTTTTTAAAAATGTTCATAGGGTTTCCCTATAATTAGATATTTGGATAACAGCAGCAGAATTAAAAAATAAGGAAAAAAACTAGGATTTTATCCGATTTCCACACTACTAACAATAACACTTTTTCCTTCACTAAGAATAATAGGAGACGACCAAAAGTGGGCGGAGCCTTGAATGGAGAGCAAGGCGTTTTGTGCATTCGGAAAAAAAAACGAAGCGGTTACGCGCGGGGCTAGGCAAAAGCGAAAAAAAGAAACGTGCATCAGGAATTGGGCGGGAGCAGCACGAAATGAATAAGAATTTCGYAAATTTGCTTGGCCGATCATCTTGATGAGTGTTCCGAAAAAAGTTTAGCAAGAAGAAGAGAGAAGAAGAGAGAGTGATGAGTAGCTGGTTGAACTAAAAACAGAAATGAAATAGGGTTGTGGTGGTGGTCCAGATTGGAAAAAGAAGGGATCTTTTTAGGGGTTTCAGTATCCTTTGTCACAGAAACTCATCTCTTTTAAGTGTTTTTCCAGAGAGAAATGTTTTTCGGACGACTCTAAGTGACCACAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>229 193 107 103 60 36 27 24 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 5</canonical_bands>
                <polymorphic_bands>229 193 139 107 60 27 24 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACACTTTTTCCTTCACTAAGAA</pcr_primer_p1>
		<pcr_primer_p2>TCTCTTCTTCTTGCTAAACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AACACTTTTTCCTTCACTAAGAATAATAGGAGACGACCAAAAGTGGGCGGAGCCTTGAATGGAGAGCAAGGCGTTTTGTGCATTCGGAAAAAAAAACGAAGCGGTTACGCGCGGGGCTAGGCAAAAGCGAAAAAAAGAAACGTGCATCAGGAATTGGGCGGGAGCAGCACGAAATGAATAAGAATTTCGGAAATTTGCTTGGCCGATCATCTTGATGAGTGTTCCGAAAAAAGTTTAGCAAGAAGAAGAGA</canonical_amplicon>
		<polymorphic_amplicon>AACACTTTTTCCTTCACTAAGAATAATAGGAGACGACCAAAAGTGGGCGGAGCCTTGAATGGAGAGCAAGGCGTTTTGTGCATTCGGAAAAAAAAACGAAGCGGTTACGCGCGGGGCTAGGCAAAAGCGAAAAAAAGAAACGTGCATCAGGAATTGGGCGGGAGCAGCACGAAATGAATAAGAATTTCGYAAATTTGCTTGGCCGATCATCTTGATGAGTGTTCCGAAAAAAGTTTAGCAAGAAGAAGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39171</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>272273</contig_pos>
        <strand></strand>
        <context>aaattcaaat[C/T]aatttttttc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGAGAACCTGTAACAGAAGGTCCCCCCCCTCCCACTGTCAAATTCAAAT</left_flank>
        <right_flank>AATTTTTTTCGGTTCCAATCATACATGTGGATGGCCCCGGGCCGCCTAAG</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGAAAACTTTGGAGAAGGTAAAATAGACCTAGATTTCAAAATTTGCACTTACAGGATTTTTTGAAATTCCTAGTTTTTCAGCTATTTGATTTCTAAAAGACACCAGTTTTCTCTTATTTTCAGTACAAAACAAGGCTGAAAAAAGGGTTTCAGTCAGAATTTGGCAAATAGCTGTAAAACTAGGTACTTTCAAAAAATTCTGTCAATGCGAAATTTTTGATCTATGTGTATTTCATACCCTCCAAAGTTTGCAAAAAAATCGGAAATTTAACTGGCGAGTTTCAGACTCCTGAAACTGGTCAAAATAGGTGACGATAACCTGAAAGAACCAAGTTTTTTGTACATTTTATGGACCGGTACTGTACATTTTAGCATTTTTAAGCTTGACTTCATATCTCCAACGATTTTTGGGGAATCATTCTTACTATAATACTTTAAAATATTTCACCGTGAGAACCTGTAACAGAAGGTCCCCCCCCTCCCACTGTCAAATTCAAATCAATTTTTTTCGGTTCCAATCATACATGTGGATGGCCCCGGGCCGCCTAAGACAACTTTTCGAAAATGTTACTTTTCAAATGTGCCAATATATCTTAATAGCAATCCAAATGCATACAACCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAATCAAACTTCATTAAGCCAAGGATGAAACTTTTTTCTAAAAACAACCTCAAAACAGTTTTTTTTTTGACAGAATCGTCCTCTAGTGTGGATTTTTATTTATTAAAGAAAAAAGCCATTTTCAAAAATGATGATTTGCTCTGAAATTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCTTTCAGAAAAAAGCCCGCTTTCAGAAAAATCCCAGCCCGGCCATGGCCCGGCCCGGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGGTTCCAATGCAAGATATCAAACATTTGTTAACTGACAAGATGTTTGTGTTACTA</canonical>
            <polymorphic>TGAAAACTTTGGAGAAGGTAAAATAGACCTAGATTTCAAAATTTGCACTTACAGGATTTTTTGAAATTCCTAGTTTTTCAGCTATTTGATTTCTAAAAGACACCAGTTTTCTCTTATTTTCAGTACAAAACAAGGCTGAAAAAAGGGTTTCAGTCAGAATTTGGCAAATAGCTGTAAAACTAGGTACTTTCAAAAAATTCTGTCAATGCGAAATTTTTGATCTATGTGTATTTCATACCCTCCAAAGTTTGCAAAAAAATCGGAAATTTAACTGGCGAGTTTCAGACTCCTGAAACTGGTCAAAATAGGTGACGATAACCTGAAAGAACCAAGTTTTTTGTACATTTTATGGACCGGTACTGTACATTTTAGCATTTTTAAGCTTGACTTCATATCTCCAACGATTTTTGGGGAATCATTCTTACTATAATACTTTAAAATATTTCACCGTGAGAACCTGTAACAGAAGGTCCCCCCCCTCCCACTGTCAAATTCAAATYAATTTTTTTCGGTTCCAATCATACATGTGGATGGCCCCGGGCCGCCTAAGACAACTTTTCGAAAATGTTACTTTTCAAATGTGCCAATATATCTTAATAGCAATCCAAATGCATACAACCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAATCAAACTTCATTAAGCCAAGGATGAAACTTTTTTCTAAAAACAACCTCAAAACAGTTTTTTTTTTGACAGAATCGTCCTCTAGTGTGGATTTTTATTTATTAAAGAAAAAAGCCATTTTCAAAAATGATGATTTGCTCTGAAATTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCTTTCAGAAAAAAGCCCGCTTTCAGAAAAATCCCAGCCCGGCCATGGCCCGGCCCGGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGGTTCCAATGCAAGATATCAAACATTTGTTAACTGACAAGATGTTTGTGTTACTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGGGGAATCATTCTTACTAT</pcr_primer_p1>
		<pcr_primer_p2>AATGATTGAAGGGTCAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>693</pcr_amplicon_size>
		<canonical_amplicon>TTTTGGGGAATCATTCTTACTATAATACTTTAAAATATTTCACCGTGAGAACCTGTAACAGAAGGTCCCCCCCCTCCCACTGTCAAATTCAAATCAATTTTTTTCGGTTCCAATC</canonical_amplicon>
		<polymorphic_amplicon>TTTTGGGGAATCATTCTTACTATAATACTTTAAAATATTTCACCGTGAGAACCTGTAACAGAAGGTCCCCCCCCTCCCACTGTCAAATTCAAATYAATTTTTTTCGGTTCCAATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39172</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>272392</contig_pos>
        <strand></strand>
        <context>atgcatacaa[C/T]yatccgaaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACTTTTCAAATGTGCCAATATATCTTAATAGCAATCCAAATGCATACAA</left_flank>
        <right_flank>CATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAATCAAACTTC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGTACAAAACAAGGCTGAAAAAAGGGTTTCAGTCAGAATTTGGCAAATAGCTGTAAAACTAGGTACTTTCAAAAAATTCTGTCAATGCGAAATTTTTGATCTATGTGTATTTCATACCCTCCAAAGTTTGCAAAAAAATCGGAAATTTAACTGGCGAGTTTCAGACTCCTGAAACTGGTCAAAATAGGTGACGATAACCTGAAAGAACCAAGTTTTTTGTACATTTTATGGACCGGTACTGTACATTTTAGCATTTTTAAGCTTGACTTCATATCTCCAACGATTTTTGGGGAATCATTCTTACTATAATACTTTAAAATATTTCACCGTGAGAACCTGTAACAGAAGGTCCCCCCCCTCCCACTGTCAAATTCAAATCAATTTTTTTCGGTTCCAATCATACATGTGGATGGCCCCGGGCCGCCTAAGACAACTTTTCGAAAATGTTACTTTTCAAATGTGCCAATATATCTTAATAGCAATCCAAATGCATACAACCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAATCAAACTTCATTAAGCCAAGGATGAAACTTTTTTCTAAAAACAACCTCAAAACAGTTTTTTTTTTGACAGAATCGTCCTCTAGTGTGGATTTTTATTTATTAAAGAAAAAAGCCATTTTCAAAAATGATGATTTGCTCTGAAATTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCTTTCAGAAAAAAGCCCGCTTTCAGAAAAATCCCAGCCCGGCCATGGCCCGGCCCGGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGGTTCCAATGCAAGATATCAAACATTTGTTAACTGACAAGATGTTTGTGTTACTATGATAATCAATTTATCAGTTTACAACTATTTTGTGTCTCTGAAAGGGACCGAGATAAACCGGCTTGAAGTTAAAAGGGTTTTTGACCCTTCAATCATTTTTGTGAGTTTTGTTTTTCCC</canonical>
            <polymorphic>TCAGTACAAAACAAGGCTGAAAAAAGGGTTTCAGTCAGAATTTGGCAAATAGCTGTAAAACTAGGTACTTTCAAAAAATTCTGTCAATGCGAAATTTTTGATCTATGTGTATTTCATACCCTCCAAAGTTTGCAAAAAAATCGGAAATTTAACTGGCGAGTTTCAGACTCCTGAAACTGGTCAAAATAGGTGACGATAACCTGAAAGAACCAAGTTTTTTGTACATTTTATGGACCGGTACTGTACATTTTAGCATTTTTAAGCTTGACTTCATATCTCCAACGATTTTTGGGGAATCATTCTTACTATAATACTTTAAAATATTTCACCGTGAGAACCTGTAACAGAAGGTCCCCCCCCTCCCACTGTCAAATTCAAATCAATTTTTTTCGGTTCCAATCATACATGTGGATGGCCCCGGGCCGCCTAAGACAACTTTTCGAAAATGTTACTTTTCAAATGTGCCAATATATCTTAATAGCAATCCAAATGCATACAAYCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAATCAAACTTCATTAAGCCAAGGATGAAACTTTTTTCTAAAAACAACCTCAAAACAGTTTTTTTTTTGACAGAATCGTCCTCTAGTGTGGATTTTTATTTATTAAAGAAAAAAGCCATTTTCAAAAATGATGATTTGCTCTGAAATTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCTTTCAGAAAAAAGCCCGCTTTCAGAAAAATCCCAGCCCGGCCATGGCCCGGCCCGGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGGTTCCAATGCAAGATATCAAACATTTGTTAACTGACAAGATGTTTGTGTTACTATGATAATCAATTTATCAGTTTACAACTATTTTGTGTCTCTGAAAGGGACCGAGATAAACCGGCTTGAAGTTAAAAGGGTTTTTGACCCTTCAATCATTTTTGTGAGTTTTGTTTTTCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGGGGAATCATTCTTACTAT</pcr_primer_p1>
		<pcr_primer_p2>AATGATTGAAGGGTCAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>693</pcr_amplicon_size>
		<canonical_amplicon>TTTTGGGGAATCATTCTTACTATAATACTTTAAAATATTTCACCGTGAGAACCTGTAACAGAAGGTCCCCCCCCTCCCACTGTCAAATTCAAATCAATTTTTTTCGGTTCCAATCATACATGTGGATGGCCCCGGGCCGCCTAAGACAACTTTTCGAAAATGTTACTTTTCAAATGTGCCAATATATCTTAATAGCAATCCAAATGCATACAACCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAATCAAACTTCATTAAGCCAAGGATGAAACTTTTTTCTAAAAACAACCTCAAAACAGTTTTTTTTTTGACAGAATCGTCCTCTAGTGTGGATTTTTATTTATTAAAGAAAAAAGCCATTTTCAAAAATGATGATTTGCTCTGAAATTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCTTTCAGAAAAAAGCCCGCTTTCAGAAAAATCCCAGCCCGGCCATGGCCCGGCCCGGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGGTTCCAATGCAAGATATCAAACATTTGTTAACTGACAAGATGTTTGTGTTACTATGATAATCAATTTATCAGTTTACAACTATTTTGTGTCTCTGAAAGGGACCGAGATAAACCGGCTTGAAGTTAAAAGGGTTTTTGACCCTTCAATCATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGGGGAATCATTCTTACTATAATACTTTAAAATATTTCACCGTGAGAACCTGTAACAGAAGGTCCCCCCCCTCCCACTGTCAAATTCAAATCAATTTTTTTCGGTTCCAATCATACATGTGGATGGCCCCGGGCCGCCTAAGACAACTTTTCGAAAATGTTACTTTTCAAATGTGCCAATATATCTTAATAGCAATCCAAATGCATACAAYCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAATCAAACTTCATTAAGCCAAGGATGAAACTTTTTTCTAAAAACAACCTCAAAACAGTTTTTTTTTTGACAGAATCGTCCTCTAGTGTGGATTTTTATTTATTAAAGAAAAAAGCCATTTTCAAAAATGATGATTTGCTCTGAAATTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCTTTCAGAAAAAAGCCCGCTTTCAGAAAAATCCCAGCCCGGCCATGGCCCGGCCCGGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGGTTCCAATGCAAGATATCAAACATTTGTTAACTGACAAGATGTTTGTGTTACTATGATAATCAATTTATCAGTTTACAACTATTTTGTGTCTCTGAAAGGGACCGAGATAAACCGGCTTGAAGTTAAAAGGGTTTTTGACCCTTCAATCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39173</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>272393</contig_pos>
        <strand></strand>
        <context>tgcatacaay[C/T]atccgaaaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTTTTCAAATGTGCCAATATATCTTAATAGCAATCCAAATGCATACAAC</left_flank>
        <right_flank>ATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAATCAAACTTCA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTACAAAACAAGGCTGAAAAAAGGGTTTCAGTCAGAATTTGGCAAATAGCTGTAAAACTAGGTACTTTCAAAAAATTCTGTCAATGCGAAATTTTTGATCTATGTGTATTTCATACCCTCCAAAGTTTGCAAAAAAATCGGAAATTTAACTGGCGAGTTTCAGACTCCTGAAACTGGTCAAAATAGGTGACGATAACCTGAAAGAACCAAGTTTTTTGTACATTTTATGGACCGGTACTGTACATTTTAGCATTTTTAAGCTTGACTTCATATCTCCAACGATTTTTGGGGAATCATTCTTACTATAATACTTTAAAATATTTCACCGTGAGAACCTGTAACAGAAGGTCCCCCCCCTCCCACTGTCAAATTCAAATCAATTTTTTTCGGTTCCAATCATACATGTGGATGGCCCCGGGCCGCCTAAGACAACTTTTCGAAAATGTTACTTTTCAAATGTGCCAATATATCTTAATAGCAATCCAAATGCATACAACCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAATCAAACTTCATTAAGCCAAGGATGAAACTTTTTTCTAAAAACAACCTCAAAACAGTTTTTTTTTTGACAGAATCGTCCTCTAGTGTGGATTTTTATTTATTAAAGAAAAAAGCCATTTTCAAAAATGATGATTTGCTCTGAAATTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCTTTCAGAAAAAAGCCCGCTTTCAGAAAAATCCCAGCCCGGCCATGGCCCGGCCCGGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGGTTCCAATGCAAGATATCAAACATTTGTTAACTGACAAGATGTTTGTGTTACTATGATAATCAATTTATCAGTTTACAACTATTTTGTGTCTCTGAAAGGGACCGAGATAAACCGGCTTGAAGTTAAAAGGGTTTTTGACCCTTCAATCATTTTTGTGAGTTTTGTTTTTCCCT</canonical>
            <polymorphic>CAGTACAAAACAAGGCTGAAAAAAGGGTTTCAGTCAGAATTTGGCAAATAGCTGTAAAACTAGGTACTTTCAAAAAATTCTGTCAATGCGAAATTTTTGATCTATGTGTATTTCATACCCTCCAAAGTTTGCAAAAAAATCGGAAATTTAACTGGCGAGTTTCAGACTCCTGAAACTGGTCAAAATAGGTGACGATAACCTGAAAGAACCAAGTTTTTTGTACATTTTATGGACCGGTACTGTACATTTTAGCATTTTTAAGCTTGACTTCATATCTCCAACGATTTTTGGGGAATCATTCTTACTATAATACTTTAAAATATTTCACCGTGAGAACCTGTAACAGAAGGTCCCCCCCCTCCCACTGTCAAATTCAAATCAATTTTTTTCGGTTCCAATCATACATGTGGATGGCCCCGGGCCGCCTAAGACAACTTTTCGAAAATGTTACTTTTCAAATGTGCCAATATATCTTAATAGCAATCCAAATGCATACAACYATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAATCAAACTTCATTAAGCCAAGGATGAAACTTTTTTCTAAAAACAACCTCAAAACAGTTTTTTTTTTGACAGAATCGTCCTCTAGTGTGGATTTTTATTTATTAAAGAAAAAAGCCATTTTCAAAAATGATGATTTGCTCTGAAATTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCTTTCAGAAAAAAGCCCGCTTTCAGAAAAATCCCAGCCCGGCCATGGCCCGGCCCGGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGGTTCCAATGCAAGATATCAAACATTTGTTAACTGACAAGATGTTTGTGTTACTATGATAATCAATTTATCAGTTTACAACTATTTTGTGTCTCTGAAAGGGACCGAGATAAACCGGCTTGAAGTTAAAAGGGTTTTTGACCCTTCAATCATTTTTGTGAGTTTTGTTTTTCCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGGGGAATCATTCTTACTAT</pcr_primer_p1>
		<pcr_primer_p2>AATGATTGAAGGGTCAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>693</pcr_amplicon_size>
		<canonical_amplicon>TTTTGGGGAATCATTCTTACTATAATACTTTAAAATATTTCACCGTGAGAACCTGTAACAGAAGGTCCCCCCCCTCCCACTGTCAAATTCAAATCAATTTTTTTCGGTTCCAATCATACATGTGGATGGCCCCGGGCCGCCTAAGACAACTTTTCGAAAATGTTACTTTTCAAATGTGCCAATATATCTTAATAGCAATCCAAATGCATACAACCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAATCAAACTTCATTAAGCCAAGGATGAAACTTTTTTCTAAAAACAACCTCAAAACAGTTTTTTTTTTGACAGAATCGTCCTCTAGTGTGGATTTTTATTTATTAAAGAAAAAAGCCATTTTCAAAAATGATGATTTGCTCTGAAATTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCTTTCAGAAAAAAGCCCGCTTTCAGAAAAATCCCAGCCCGGCCATGGCCCGGCCCGGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGGTTCCAATGCAAGATATCAAACATTTGTTAACTGACAAGATGTTTGTGTTACTATGATAATCAATTTATCAGTTTACAACTATTTTGTGTCTCTGAAAGGGACCGAGATAAACCGGCTTGAAGTTAAAAGGGTTTTTGACCCTTCAATCATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGGGGAATCATTCTTACTATAATACTTTAAAATATTTCACCGTGAGAACCTGTAACAGAAGGTCCCCCCCCTCCCACTGTCAAATTCAAATCAATTTTTTTCGGTTCCAATCATACATGTGGATGGCCCCGGGCCGCCTAAGACAACTTTTCGAAAATGTTACTTTTCAAATGTGCCAATATATCTTAATAGCAATCCAAATGCATACAACYATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAATCAAACTTCATTAAGCCAAGGATGAAACTTTTTTCTAAAAACAACCTCAAAACAGTTTTTTTTTTGACAGAATCGTCCTCTAGTGTGGATTTTTATTTATTAAAGAAAAAAGCCATTTTCAAAAATGATGATTTGCTCTGAAATTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCTTTCAGAAAAAAGCCCGCTTTCAGAAAAATCCCAGCCCGGCCATGGCCCGGCCCGGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGGTTCCAATGCAAGATATCAAACATTTGTTAACTGACAAGATGTTTGTGTTACTATGATAATCAATTTATCAGTTTACAACTATTTTGTGTCTCTGAAAGGGACCGAGATAAACCGGCTTGAAGTTAAAAGGGTTTTTGACCCTTCAATCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39174</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>272416</contig_pos>
        <strand></strand>
        <context>caatttaatt[G/A]aatttttagc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTTAATAGCAATCCAAATGCATACAACCATCCGAAAAAGTCAATTTAATT</left_flank>
        <right_flank>AATTTTTAGCAAAAAAATCAAACTTCATTAAGCCAAGGATGAAACTTTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGGTTTCAGTCAGAATTTGGCAAATAGCTGTAAAACTAGGTACTTTCAAAAAATTCTGTCAATGCGAAATTTTTGATCTATGTGTATTTCATACCCTCCAAAGTTTGCAAAAAAATCGGAAATTTAACTGGCGAGTTTCAGACTCCTGAAACTGGTCAAAATAGGTGACGATAACCTGAAAGAACCAAGTTTTTTGTACATTTTATGGACCGGTACTGTACATTTTAGCATTTTTAAGCTTGACTTCATATCTCCAACGATTTTTGGGGAATCATTCTTACTATAATACTTTAAAATATTTCACCGTGAGAACCTGTAACAGAAGGTCCCCCCCCTCCCACTGTCAAATTCAAATCAATTTTTTTCGGTTCCAATCATACATGTGGATGGCCCCGGGCCGCCTAAGACAACTTTTCGAAAATGTTACTTTTCAAATGTGCCAATATATCTTAATAGCAATCCAAATGCATACAACCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAATCAAACTTCATTAAGCCAAGGATGAAACTTTTTTCTAAAAACAACCTCAAAACAGTTTTTTTTTTGACAGAATCGTCCTCTAGTGTGGATTTTTATTTATTAAAGAAAAAAGCCATTTTCAAAAATGATGATTTGCTCTGAAATTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCTTTCAGAAAAAAGCCCGCTTTCAGAAAAATCCCAGCCCGGCCATGGCCCGGCCCGGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGGTTCCAATGCAAGATATCAAACATTTGTTAACTGACAAGATGTTTGTGTTACTATGATAATCAATTTATCAGTTTACAACTATTTTGTGTCTCTGAAAGGGACCGAGATAAACCGGCTTGAAGTTAAAAGGGTTTTTGACCCTTCAATCATTTTTGTGAGTTTTGTTTTTCCCTCCGGAGTTTAAAAAAGAAAACCA</canonical>
            <polymorphic>AGGGTTTCAGTCAGAATTTGGCAAATAGCTGTAAAACTAGGTACTTTCAAAAAATTCTGTCAATGCGAAATTTTTGATCTATGTGTATTTCATACCCTCCAAAGTTTGCAAAAAAATCGGAAATTTAACTGGCGAGTTTCAGACTCCTGAAACTGGTCAAAATAGGTGACGATAACCTGAAAGAACCAAGTTTTTTGTACATTTTATGGACCGGTACTGTACATTTTAGCATTTTTAAGCTTGACTTCATATCTCCAACGATTTTTGGGGAATCATTCTTACTATAATACTTTAAAATATTTCACCGTGAGAACCTGTAACAGAAGGTCCCCCCCCTCCCACTGTCAAATTCAAATCAATTTTTTTCGGTTCCAATCATACATGTGGATGGCCCCGGGCCGCCTAAGACAACTTTTCGAAAATGTTACTTTTCAAATGTGCCAATATATCTTAATAGCAATCCAAATGCATACAACCATCCGAAAAAGTCAATTTAATTRAATTTTTAGCAAAAAAATCAAACTTCATTAAGCCAAGGATGAAACTTTTTTCTAAAAACAACCTCAAAACAGTTTTTTTTTTGACAGAATCGTCCTCTAGTGTGGATTTTTATTTATTAAAGAAAAAAGCCATTTTCAAAAATGATGATTTGCTCTGAAATTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCTTTCAGAAAAAAGCCCGCTTTCAGAAAAATCCCAGCCCGGCCATGGCCCGGCCCGGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGGTTCCAATGCAAGATATCAAACATTTGTTAACTGACAAGATGTTTGTGTTACTATGATAATCAATTTATCAGTTTACAACTATTTTGTGTCTCTGAAAGGGACCGAGATAAACCGGCTTGAAGTTAAAAGGGTTTTTGACCCTTCAATCATTTTTGTGAGTTTTGTTTTTCCCTCCGGAGTTTAAAAAAGAAAACCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>334 226 158 153 53 38 16 14 8</canonical_bands>
                <polymorphic_bands>334 311 226 53 38 16 14 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGGGGAATCATTCTTACTAT</pcr_primer_p1>
		<pcr_primer_p2>AATGATTGAAGGGTCAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>693</pcr_amplicon_size>
		<canonical_amplicon>TTTTGGGGAATCATTCTTACTATAATACTTTAAAATATTTCACCGTGAGAACCTGTAACAGAAGGTCCCCCCCCTCCCACTGTCAAATTCAAATCAATTTTTTTCGGTTCCAATCATACATGTGGATGGCCCCGGGCCGCCTAAGACAACTTTTCGAAAATGTTACTTTTCAAATGTGCCAATATATCTTAATAGCAATCCAAATGCATACAACCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAATCAAACTTCATTAAGCCAAGGATGAAACTTTTTTCTAAAAACAACCTCAAAACAGTTTTTTTTTTGACAGAATCGTCCTCTAGTGTGGATTTTTATTTATTAAAGAAAAAAGCCATTTTCAAAAATGATGATTTGCTCTGAAATTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCTTTCAGAAAAAAGCCCGCTTTCAGAAAAATCCCAGCCCGGCCATGGCCCGGCCCGGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGGTTCCAATGCAAGATATCAAACATTTGTTAACTGACAAGATGTTTGTGTTACTATGATAATCAATTTATCAGTTTACAACTATTTTGTGTCTCTGAAAGGGACCGAGATAAACCGGCTTGAAGTTAAAAGGGTTTTTGACCCTTCAATCATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGGGGAATCATTCTTACTATAATACTTTAAAATATTTCACCGTGAGAACCTGTAACAGAAGGTCCCCCCCCTCCCACTGTCAAATTCAAATCAATTTTTTTCGGTTCCAATCATACATGTGGATGGCCCCGGGCCGCCTAAGACAACTTTTCGAAAATGTTACTTTTCAAATGTGCCAATATATCTTAATAGCAATCCAAATGCATACAACCATCCGAAAAAGTCAATTTAATTRAATTTTTAGCAAAAAAATCAAACTTCATTAAGCCAAGGATGAAACTTTTTTCTAAAAACAACCTCAAAACAGTTTTTTTTTTGACAGAATCGTCCTCTAGTGTGGATTTTTATTTATTAAAGAAAAAAGCCATTTTCAAAAATGATGATTTGCTCTGAAATTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCTTTCAGAAAAAAGCCCGCTTTCAGAAAAATCCCAGCCCGGCCATGGCCCGGCCCGGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGGTTCCAATGCAAGATATCAAACATTTGTTAACTGACAAGATGTTTGTGTTACTATGATAATCAATTTATCAGTTTACAACTATTTTGTGTCTCTGAAAGGGACCGAGATAAACCGGCTTGAAGTTAAAAGGGTTTTTGACCCTTCAATCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39175</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>272446</contig_pos>
        <strand></strand>
        <context>aaacttcatt[A/T]agccaaggat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAATCAAACTTCATT</left_flank>
        <right_flank>AGCCAAGGATGAAACTTTTTTCTAAAAACAACCTCAAAACAGTTTTTTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAAAACTAGGTACTTTCAAAAAATTCTGTCAATGCGAAATTTTTGATCTATGTGTATTTCATACCCTCCAAAGTTTGCAAAAAAATCGGAAATTTAACTGGCGAGTTTCAGACTCCTGAAACTGGTCAAAATAGGTGACGATAACCTGAAAGAACCAAGTTTTTTGTACATTTTATGGACCGGTACTGTACATTTTAGCATTTTTAAGCTTGACTTCATATCTCCAACGATTTTTGGGGAATCATTCTTACTATAATACTTTAAAATATTTCACCGTGAGAACCTGTAACAGAAGGTCCCCCCCCTCCCACTGTCAAATTCAAATCAATTTTTTTCGGTTCCAATCATACATGTGGATGGCCCCGGGCCGCCTAAGACAACTTTTCGAAAATGTTACTTTTCAAATGTGCCAATATATCTTAATAGCAATCCAAATGCATACAACCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAATCAAACTTCATTAAGCCAAGGATGAAACTTTTTTCTAAAAACAACCTCAAAACAGTTTTTTTTTTGACAGAATCGTCCTCTAGTGTGGATTTTTATTTATTAAAGAAAAAAGCCATTTTCAAAAATGATGATTTGCTCTGAAATTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCTTTCAGAAAAAAGCCCGCTTTCAGAAAAATCCCAGCCCGGCCATGGCCCGGCCCGGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGGTTCCAATGCAAGATATCAAACATTTGTTAACTGACAAGATGTTTGTGTTACTATGATAATCAATTTATCAGTTTACAACTATTTTGTGTCTCTGAAAGGGACCGAGATAAACCGGCTTGAAGTTAAAAGGGTTTTTGACCCTTCAATCATTTTTGTGAGTTTTGTTTTTCCCTCCGGAGTTTAAAAAAGAAAACCAAATTCCGAATTTCTAAACTCCCGAAATTCC</canonical>
            <polymorphic>GTAAAACTAGGTACTTTCAAAAAATTCTGTCAATGCGAAATTTTTGATCTATGTGTATTTCATACCCTCCAAAGTTTGCAAAAAAATCGGAAATTTAACTGGCGAGTTTCAGACTCCTGAAACTGGTCAAAATAGGTGACGATAACCTGAAAGAACCAAGTTTTTTGTACATTTTATGGACCGGTACTGTACATTTTAGCATTTTTAAGCTTGACTTCATATCTCCAACGATTTTTGGGGAATCATTCTTACTATAATACTTTAAAATATTTCACCGTGAGAACCTGTAACAGAAGGTCCCCCCCCTCCCACTGTCAAATTCAAATCAATTTTTTTCGGTTCCAATCATACATGTGGATGGCCCCGGGCCGCCTAAGACAACTTTTCGAAAATGTTACTTTTCAAATGTGCCAATATATCTTAATAGCAATCCAAATGCATACAACCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAATCAAACTTCATTWAGCCAAGGATGAAACTTTTTTCTAAAAACAACCTCAAAACAGTTTTTTTTTTGACAGAATCGTCCTCTAGTGTGGATTTTTATTTATTAAAGAAAAAAGCCATTTTCAAAAATGATGATTTGCTCTGAAATTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCTTTCAGAAAAAAGCCCGCTTTCAGAAAAATCCCAGCCCGGCCATGGCCCGGCCCGGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGGTTCCAATGCAAGATATCAAACATTTGTTAACTGACAAGATGTTTGTGTTACTATGATAATCAATTTATCAGTTTACAACTATTTTGTGTCTCTGAAAGGGACCGAGATAAACCGGCTTGAAGTTAAAAGGGTTTTTGACCCTTCAATCATTTTTGTGAGTTTTGTTTTTCCCTCCGGAGTTTAAAAAAGAAAACCAAATTCCGAATTTCTAAACTCCCGAAATTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>214 159 110 96 95 89 58 57 45 43 34</canonical_bands>
                <polymorphic_bands>214 159 123 110 96 95 58 57 45 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGGGGAATCATTCTTACTAT</pcr_primer_p1>
		<pcr_primer_p2>AATGATTGAAGGGTCAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>693</pcr_amplicon_size>
		<canonical_amplicon>TTTTGGGGAATCATTCTTACTATAATACTTTAAAATATTTCACCGTGAGAACCTGTAACAGAAGGTCCCCCCCCTCCCACTGTCAAATTCAAATCAATTTTTTTCGGTTCCAATCATACATGTGGATGGCCCCGGGCCGCCTAAGACAACTTTTCGAAAATGTTACTTTTCAAATGTGCCAATATATCTTAATAGCAATCCAAATGCATACAACCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAATCAAACTTCATTAAGCCAAGGATGAAACTTTTTTCTAAAAACAACCTCAAAACAGTTTTTTTTTTGACAGAATCGTCCTCTAGTGTGGATTTTTATTTATTAAAGAAAAAAGCCATTTTCAAAAATGATGATTTGCTCTGAAATTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCTTTCAGAAAAAAGCCCGCTTTCAGAAAAATCCCAGCCCGGCCATGGCCCGGCCCGGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGGTTCCAATGCAAGATATCAAACATTTGTTAACTGACAAGATGTTTGTGTTACTATGATAATCAATTTATCAGTTTACAACTATTTTGTGTCTCTGAAAGGGACCGAGATAAACCGGCTTGAAGTTAAAAGGGTTTTTGACCCTTCAATCATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGGGGAATCATTCTTACTATAATACTTTAAAATATTTCACCGTGAGAACCTGTAACAGAAGGTCCCCCCCCTCCCACTGTCAAATTCAAATCAATTTTTTTCGGTTCCAATCATACATGTGGATGGCCCCGGGCCGCCTAAGACAACTTTTCGAAAATGTTACTTTTCAAATGTGCCAATATATCTTAATAGCAATCCAAATGCATACAACCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAATCAAACTTCATTWAGCCAAGGATGAAACTTTTTTCTAAAAACAACCTCAAAACAGTTTTTTTTTTGACAGAATCGTCCTCTAGTGTGGATTTTTATTTATTAAAGAAAAAAGCCATTTTCAAAAATGATGATTTGCTCTGAAATTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCTTTCAGAAAAAAGCCCGCTTTCAGAAAAATCCCAGCCCGGCCATGGCCCGGCCCGGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGGTTCCAATGCAAGATATCAAACATTTGTTAACTGACAAGATGTTTGTGTTACTATGATAATCAATTTATCAGTTTACAACTATTTTGTGTCTCTGAAAGGGACCGAGATAAACCGGCTTGAAGTTAAAAGGGTTTTTGACCCTTCAATCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39176</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>272476</contig_pos>
        <strand></strand>
        <context>ttctaaaaac[A/G]acctcaaaac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAAAAAATCAAACTTCATTAAGCCAAGGATGAAACTTTTTTCTAAAAAC</left_flank>
        <right_flank>ACCTCAAAACAGTTTTTTTTTTGACAGAATCGTCCTCTAGTGTGGATTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATGCGAAATTTTTGATCTATGTGTATTTCATACCCTCCAAAGTTTGCAAAAAAATCGGAAATTTAACTGGCGAGTTTCAGACTCCTGAAACTGGTCAAAATAGGTGACGATAACCTGAAAGAACCAAGTTTTTTGTACATTTTATGGACCGGTACTGTACATTTTAGCATTTTTAAGCTTGACTTCATATCTCCAACGATTTTTGGGGAATCATTCTTACTATAATACTTTAAAATATTTCACCGTGAGAACCTGTAACAGAAGGTCCCCCCCCTCCCACTGTCAAATTCAAATCAATTTTTTTCGGTTCCAATCATACATGTGGATGGCCCCGGGCCGCCTAAGACAACTTTTCGAAAATGTTACTTTTCAAATGTGCCAATATATCTTAATAGCAATCCAAATGCATACAACCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAATCAAACTTCATTAAGCCAAGGATGAAACTTTTTTCTAAAAACAACCTCAAAACAGTTTTTTTTTTGACAGAATCGTCCTCTAGTGTGGATTTTTATTTATTAAAGAAAAAAGCCATTTTCAAAAATGATGATTTGCTCTGAAATTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCTTTCAGAAAAAAGCCCGCTTTCAGAAAAATCCCAGCCCGGCCATGGCCCGGCCCGGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGGTTCCAATGCAAGATATCAAACATTTGTTAACTGACAAGATGTTTGTGTTACTATGATAATCAATTTATCAGTTTACAACTATTTTGTGTCTCTGAAAGGGACCGAGATAAACCGGCTTGAAGTTAAAAGGGTTTTTGACCCTTCAATCATTTTTGTGAGTTTTGTTTTTCCCTCCGGAGTTTAAAAAAGAAAACCAAATTCCGAATTTCTAAACTCCCGAAATTCCAAATTTTGACTCCTGAATTATTACGTCAGA</canonical>
            <polymorphic>CAATGCGAAATTTTTGATCTATGTGTATTTCATACCCTCCAAAGTTTGCAAAAAAATCGGAAATTTAACTGGCGAGTTTCAGACTCCTGAAACTGGTCAAAATAGGTGACGATAACCTGAAAGAACCAAGTTTTTTGTACATTTTATGGACCGGTACTGTACATTTTAGCATTTTTAAGCTTGACTTCATATCTCCAACGATTTTTGGGGAATCATTCTTACTATAATACTTTAAAATATTTCACCGTGAGAACCTGTAACAGAAGGTCCCCCCCCTCCCACTGTCAAATTCAAATCAATTTTTTTCGGTTCCAATCATACATGTGGATGGCCCCGGGCCGCCTAAGACAACTTTTCGAAAATGTTACTTTTCAAATGTGCCAATATATCTTAATAGCAATCCAAATGCATACAACCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAATCAAACTTCATTAAGCCAAGGATGAAACTTTTTTCTAAAAACRACCTCAAAACAGTTTTTTTTTTGACAGAATCGTCCTCTAGTGTGGATTTTTATTTATTAAAGAAAAAAGCCATTTTCAAAAATGATGATTTGCTCTGAAATTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCTTTCAGAAAAAAGCCCGCTTTCAGAAAAATCCCAGCCCGGCCATGGCCCGGCCCGGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGGTTCCAATGCAAGATATCAAACATTTGTTAACTGACAAGATGTTTGTGTTACTATGATAATCAATTTATCAGTTTACAACTATTTTGTGTCTCTGAAAGGGACCGAGATAAACCGGCTTGAAGTTAAAAGGGTTTTTGACCCTTCAATCATTTTTGTGAGTTTTGTTTTTCCCTCCGGAGTTTAAAAAAGAAAACCAAATTCCGAATTTCTAAACTCCCGAAATTCCAAATTTTGACTCCTGAATTATTACGTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGGGGAATCATTCTTACTAT</pcr_primer_p1>
		<pcr_primer_p2>AATGATTGAAGGGTCAAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>693</pcr_amplicon_size>
		<canonical_amplicon>TTTTGGGGAATCATTCTTACTATAATACTTTAAAATATTTCACCGTGAGAACCTGTAACAGAAGGTCCCCCCCCTCCCACTGTCAAATTCAAATCAATTTTTTTCGGTTCCAATCATACATGTGGATGGCCCCGGGCCGCCTAAGACAACTTTTCGAAAATGTTACTTTTCAAATGTGCCAATATATCTTAATAGCAATCCAAATGCATACAACCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAATCAAACTTCATTAAGCCAAGGATGAAACTTTTTTCTAAAAACAACCTCAAAACAGTTTTTTTTTTGACAGAATCGTCCTCTAGTGTGGATTTTTATTTATTAAAGAAAAAAGCCATTTTCAAAAATGATGATTTGCTCTGAAATTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCTTTCAGAAAAAAGCCCGCTTTCAGAAAAATCCCAGCCCGGCCATGGCCCGGCCCGGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGGTTCCAATGCAAGATATCAAACATTTGTTAACTGACAAGATGTTTGTGTTACTATGATAATCAATTTATCAGTTTACAACTATTTTGTGTCTCTGAAAGGGACCGAGATAAACCGGCTTGAAGTTAAAAGGGTTTTTGACCCTTCAATCATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGGGGAATCATTCTTACTATAATACTTTAAAATATTTCACCGTGAGAACCTGTAACAGAAGGTCCCCCCCCTCCCACTGTCAAATTCAAATCAATTTTTTTCGGTTCCAATCATACATGTGGATGGCCCCGGGCCGCCTAAGACAACTTTTCGAAAATGTTACTTTTCAAATGTGCCAATATATCTTAATAGCAATCCAAATGCATACAACCATCCGAAAAAGTCAATTTAATTGAATTTTTAGCAAAAAAATCAAACTTCATTAAGCCAAGGATGAAACTTTTTTCTAAAAACRACCTCAAAACAGTTTTTTTTTTGACAGAATCGTCCTCTAGTGTGGATTTTTATTTATTAAAGAAAAAAGCCATTTTCAAAAATGATGATTTGCTCTGAAATTTCAAAATTTTCAAAAAGCGGGCCGGCCATGTGTAATTTTTTCCGGCCCGGCCCTTTCAGAAAAAAGCCCGCTTTCAGAAAAATCCCAGCCCGGCCATGGCCCGGCCCGGCCCGCGGGCCGGCCATCTTTTCCACAAGTATGGTTCCAATGCAAGATATCAAACATTTGTTAACTGACAAGATGTTTGTGTTACTATGATAATCAATTTATCAGTTTACAACTATTTTGTGTCTCTGAAAGGGACCGAGATAAACCGGCTTGAAGTTAAAAGGGTTTTTGACCCTTCAATCATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39177</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>278870</contig_pos>
        <strand></strand>
        <context>GACCATCATC[C/A]CCACAAGCCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTGCTACGGTCGCCCCGCGCGCGCCACCTATTTTCACGCTGACCATCATC</left_flank>
        <right_flank>CCACAAGCCCGCTCGGCGCTCGCGCACACATAGACATACAATTGGACTGT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGATCAATACTTTATTAGTTGACAAGTTTTTGATATCTTTTGAAAGAACCGAGGTAATAGAGCTAAAAAATATAGTGGAATTTGATTGGAGCAGAAGCTTTAATTGGAGCGGTGGTTAGAGAGAATATTTTTTGTAAGTGATAACTTCTATGGTGATTTTTGGTCCATGATTTTACTTTACACCATAATTTTGTAGGTATTTTAGGATACATCCTCTTTCAGACTGTGACTTAACCAGGAACTATCAGACGTGCATCGCACTTAAACGTTCTCAAAATGTCCTTCTCAAAAATCCCCTATGTCCCTTCCAAACCCATTGCCTCCCCCAAAATGTACGACTCAACGACTGGGAGTCGATTGACACGAGAATATCATGATGTTCTTCTCGCGCCGCGCTTGGTGTGCATTATTTGCGTCTAGCGGCGCGGTGCGTGACCGTTCTCGGCTGTTGCTACGGTCGCCCCGCGCGCGCCACCTATTTTCACGCTGACCATCATCCCCACAAGCCCGCTCGGCGCTCGCGCACACATAGACATACAATTGGACTGTAAAGAGAAAAGAGTCCAGTTTCAATGCACGTTTTATGCGTCGCGTTCGGAAAGCCACACCCCAGGAATAGAAGCAACGTTCGGGAGGGGCTATTTTGATGGCAAACAAATACATGAGCCAATGTCGGGGGGATCATGAGTACGCGTTTCGGGCGCGAGCACAGGCACGCCGCGTCTGTCCGAGCCGTGTGCTCTCGGGCGTTTTTGTGTATACCAACCGAAATAGAATTTTATGACGATTCGGACAAAGCGTGTACTTTTAATCATCCGTGAATCACTGGCCTGTATGGTAGTTAAAGAAGTTTGACATTATGGATCTAATAAAACAGGATATTTTGATCCTAATGGGCCATTTTGAGTCTGAAGTGCCATTCTAATTTTCCGTAACCTCATCTAGTGGCCTCATTCACATCGGAACAAGTCCTAGACGAGTTGTACTAAACGATTTCTT</canonical>
            <polymorphic>ATGATCAATACTTTATTAGTTGACAAGTTTTTGATATCTTTTGAAAGAACCGAGGTAATAGAGCTAAAAAATATAGTGGAATTTGATTGGAGCAGAAGCTTTAATTGGAGCGGTGGTTAGAGAGAATATTTTTTGTAAGTGATAACTTCTATGGTGATTTTTGGTCCATGATTTTACTTTACACCATAATTTTGTAGGTATTTTAGGATACATCCTCTTTCAGACTGTGACTTAACCAGGAACTATCAGACGTGCATCGCACTTAAACGTTCTCAAAATGTCCTTCTCAAAAATCCCCTATGTCCCTTCCAAACCCATTGCCTCCCCCAAAATGTACGACTCAACGACTGGGAGTCGATTGACACGAGAATATCATGATGTTCTTCTCGCGCCGCGCTTGGTGTGCATTATTTGCGTCTAGCGGCGCGGTGCGTGACCGTTCTCGGCTGTTGCTACGGTCGCCCCGCGCGCGCCACCTATTTTCACGCTGACCATCATCMCCACAAGCCCGCTCGGCGCTCGCGCACACATAGACATACAATTGGACTGTAAAGAGAAAAGAGTCCAGTTTCAATGCACGTTTTATGCGTCGCGTTCGGAAAGCCACACCCCAGGAATAGAAGCAACGTTCGGGAGGGGCTATTTTGATGGCAAACAAATACATGAGCCAATGTCGGGGGGATCATGAGTACGCGTTTCGGGCGCGAGCACAGGCACGCCGCGTCTGTCCGAGCCGTGTGCTCTCGGGCGTTTTTGTGTATACCAACCGAAATAGAATTTTATGACGATTCGGACAAAGCGTGTACTTTTAATCATCCGTGAATCACTGGCCTGTATGGTAGTTAAAGAAGTTTGACATTATGGATCTAATAAAACAGGATATTTTGATCCTAATGGGCCATTTTGAGTCTGAAGTGCCATTCTAATTTTCCGTAACCTCATCTAGTGGCCTCATTCACATCGGAACAAGTCCTAGACGAGTTGTACTAAACGATTTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATGTACGACTCAACGACTG</pcr_primer_p1>
		<pcr_primer_p2>ATTGAAACTGGACTCTTTTCTCT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AAATGTACGACTCAACGACTGGGAGTCGATTGACACGAGAATATCATGATGTTCTTCTCGCGCCGCGCTTGGTGTGCATTATTTGCGTCTAGCGGCGCGGTGCGTGACCGTTCTCGGCTGTTGCTACGGTCGCCCCGCGCGCGCCACCTATTTTCACGCTGACCATCATCCCCACAAGCCCGCTCGGCGCTCGCGCACACATAGACATACAATTGGACTGTAAAGAGAAAAGAGTCCAGTTTCAAT</canonical_amplicon>
		<polymorphic_amplicon>AAATGTACGACTCAACGACTGGGAGTCGATTGACACGAGAATATCATGATGTTCTTCTCGCGCCGCGCTTGGTGTGCATTATTTGCGTCTAGCGGCGCGGTGCGTGACCGTTCTCGGCTGTTGCTACGGTCGCCCCGCGCGCGCCACCTATTTTCACGCTGACCATCATCMCCACAAGCCCGCTCGGCGCTCGCGCACACATAGACATACAATTGGACTGTAAAGAGAAAAGAGTCCAGTTTCAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39178</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>301004</contig_pos>
        <strand>+</strand>
        <context>AAATATTAAT[G/T]TAATTCTGCC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATTTTCCTCCAAACCCAACATCTCTTGAACTAGAATCTCTAAATATTAAT</left_flank>
        <right_flank>TAATTCTGCCAGTATTTGCTTATTTTTAATTTTCGGTTCTTTCAATTTCT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGCAAGAATTACTTCGAATTTCAGCTTGATAAAATAGTCATGTGTGCTCGCCTACTTCATGATTTCCTGCAGAAATGCCCCGATGGGAAGGAGGAGAAATTCCTCAAAAAAATCCTCGCTAAGCAGCTGGACTTCACGGATCCAACCCAAACTTTTTTCTTCCGCGAGATCATTTCCACTATCGCAATTTACAACGAAGACACTGATTGTTGGACGTTGAAGAAAATGTATCAAGAAGCGAGAATCAAGAGAAAGGATGCTGTTAACACCTCGGAAGATCATTCGCCTCCTAGATCCAAGAAACATAGGAGATCGATGGAAGATTCGTCAAACCAACCATCGACATCTACCCAAGCTTACCAGACGGACAATTAAAGTGTGTTTTCGTATTTATTGAATTTTTTCACCCCTACTTATATATATAAATATCCTCCAAAATTCCCCAGAAATTTTCCTCCAAACCCAACATCTCTTGAACTAGAATCTCTAAATATTAATGTAATTCTGCCAGTATTTGCTTATTTTTAATTTTCGGTTCTTTCAATTTCTCTACTTTATCCCGACCAATTTCAAATCTCTGCCCATTCAAATTCCCCTGCAAACCCCACATCTTTTGAGCTTGAATCTCCAAATATTAATTTATCTCTGCCCGTATTCCCTTATTTCAGATTCTCGGTTCCTTTTTTTATACCGACAAATATCAAATCTCTGCCCATTCAAACCCTCACCAAATATTTTCACGTGTTCATCTCGATTTCTGACATTCAATTCATTTTTCCTTTACGCGTACTGAATTATGTTAATGTGTATTTTGCAATATGTTTCATTTTCCGATAATAAAAAACTTTTCATCAAAATATTCTGTTGTTTTGTATTTTTTTTTTGTTTCTTGTAGTTTCAAACCTCTGCCATATCGAATTGATCGAAAAAACCTATTTTTTCAGAGAATTTGTGGTTTTTTCAGCTAAATTTAGTTTCAGACCGTTGCCTGTCATTGGT</canonical>
            <polymorphic>CGGCAAGAATTACTTCGAATTTCAGCTTGATAAAATAGTCATGTGTGCTCGCCTACTTCATGATTTCCTGCAGAAATGCCCCGATGGGAAGGAGGAGAAATTCCTCAAAAAAATCCTCGCTAAGCAGCTGGACTTCACGGATCCAACCCAAACTTTTTTCTTCCGCGAGATCATTTCCACTATCGCAATTTACAACGAAGACACTGATTGTTGGACGTTGAAGAAAATGTATCAAGAAGCGAGAATCAAGAGAAAGGATGCTGTTAACACCTCGGAAGATCATTCGCCTCCTAGATCCAAGAAACATAGGAGATCGATGGAAGATTCGTCAAACCAACCATCGACATCTACCCAAGCTTACCAGACGGACAATTAAAGTGTGTTTTCGTATTTATTGAATTTTTTCACCCCTACTTATATATATAAATATCCTCCAAAATTCCCCAGAAATTTTCCTCCAAACCCAACATCTCTTGAACTAGAATCTCTAAATATTAATKTAATTCTGCCAGTATTTGCTTATTTTTAATTTTCGGTTCTTTCAATTTCTCTACTTTATCCCGACCAATTTCAAATCTCTGCCCATTCAAATTCCCCTGCAAACCCCACATCTTTTGAGCTTGAATCTCCAAATATTAATTTATCTCTGCCCGTATTCCCTTATTTCAGATTCTCGGTTCCTTTTTTTATACCGACAAATATCAAATCTCTGCCCATTCAAACCCTCACCAAATATTTTCACGTGTTCATCTCGATTTCTGACATTCAATTCATTTTTCCTTTACGCGTACTGAATTATGTTAATGTGTATTTTGCAATATGTTTCATTTTCCGATAATAAAAAACTTTTCATCAAAATATTCTGTTGTTTTGTATTTTTTTTTTGTTTCTTGTAGTTTCAAACCTCTGCCATATCGAATTGATCGAAAAAACCTATTTTTTCAGAGAATTTGTGGTTTTTTCAGCTAAATTTAGTTTCAGACCGTTGCCTGTCATTGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGTTTTCGTATTTATTGAATTT</pcr_primer_p1>
		<pcr_primer_p2>GAGATTCAAGCTCAAAAGATGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGTGTTTTCGTATTTATTGAATTTTTTCACCCCTACTTATATATATAAATATCCTCCAAAATTCCCCAGAAATTTTCCTCCAAACCCAACATCTCTTGAACTAGAATCTCTAAATATTAATGTAATTCTGCCAGTATTTGCTTATTTTTAATTTTCGGTTCTTTCAATTTCTCTACTTTATCCCGACCAATTTCAAATCTCTGCCCATTCAAATTCCCCTGCAAACCCCACATCTTTTGAGCTTGAATCTC</canonical_amplicon>
		<polymorphic_amplicon>TGTGTTTTCGTATTTATTGAATTTTTTCACCCCTACTTATATATATAAATATCCTCCAAAATTCCCCAGAAATTTTCCTCCAAACCCAACATCTCTTGAACTAGAATCTCTAAATATTAATKTAATTCTGCCAGTATTTGCTTATTTTTAATTTTCGGTTCTTTCAATTTCTCTACTTTATCCCGACCAATTTCAAATCTCTGCCCATTCAAATTCCCCTGCAAACCCCACATCTTTTGAGCTTGAATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39179</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>301043</contig_pos>
        <strand>+</strand>
        <context>ATTTTCGGTT[C/T]YTTCAATTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAATATTAATGTAATTCTGCCAGTATTTGCTTATTTTTAATTTTCGGTT</left_flank>
        <right_flank>TTTCAATTTCTCTACTTTATCCCGACCAATTTCAAATCTCTGCCCATTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATGTGTGCTCGCCTACTTCATGATTTCCTGCAGAAATGCCCCGATGGGAAGGAGGAGAAATTCCTCAAAAAAATCCTCGCTAAGCAGCTGGACTTCACGGATCCAACCCAAACTTTTTTCTTCCGCGAGATCATTTCCACTATCGCAATTTACAACGAAGACACTGATTGTTGGACGTTGAAGAAAATGTATCAAGAAGCGAGAATCAAGAGAAAGGATGCTGTTAACACCTCGGAAGATCATTCGCCTCCTAGATCCAAGAAACATAGGAGATCGATGGAAGATTCGTCAAACCAACCATCGACATCTACCCAAGCTTACCAGACGGACAATTAAAGTGTGTTTTCGTATTTATTGAATTTTTTCACCCCTACTTATATATATAAATATCCTCCAAAATTCCCCAGAAATTTTCCTCCAAACCCAACATCTCTTGAACTAGAATCTCTAAATATTAATGTAATTCTGCCAGTATTTGCTTATTTTTAATTTTCGGTTCTTTCAATTTCTCTACTTTATCCCGACCAATTTCAAATCTCTGCCCATTCAAATTCCCCTGCAAACCCCACATCTTTTGAGCTTGAATCTCCAAATATTAATTTATCTCTGCCCGTATTCCCTTATTTCAGATTCTCGGTTCCTTTTTTTATACCGACAAATATCAAATCTCTGCCCATTCAAACCCTCACCAAATATTTTCACGTGTTCATCTCGATTTCTGACATTCAATTCATTTTTCCTTTACGCGTACTGAATTATGTTAATGTGTATTTTGCAATATGTTTCATTTTCCGATAATAAAAAACTTTTCATCAAAATATTCTGTTGTTTTGTATTTTTTTTTTGTTTCTTGTAGTTTCAAACCTCTGCCATATCGAATTGATCGAAAAAACCTATTTTTTCAGAGAATTTGTGGTTTTTTCAGCTAAATTTAGTTTCAGACCGTTGCCTGTCATTGGTTCAGTGCTTCAGTGTCCAATACTGCATATTTTCATGTCT</canonical>
            <polymorphic>CATGTGTGCTCGCCTACTTCATGATTTCCTGCAGAAATGCCCCGATGGGAAGGAGGAGAAATTCCTCAAAAAAATCCTCGCTAAGCAGCTGGACTTCACGGATCCAACCCAAACTTTTTTCTTCCGCGAGATCATTTCCACTATCGCAATTTACAACGAAGACACTGATTGTTGGACGTTGAAGAAAATGTATCAAGAAGCGAGAATCAAGAGAAAGGATGCTGTTAACACCTCGGAAGATCATTCGCCTCCTAGATCCAAGAAACATAGGAGATCGATGGAAGATTCGTCAAACCAACCATCGACATCTACCCAAGCTTACCAGACGGACAATTAAAGTGTGTTTTCGTATTTATTGAATTTTTTCACCCCTACTTATATATATAAATATCCTCCAAAATTCCCCAGAAATTTTCCTCCAAACCCAACATCTCTTGAACTAGAATCTCTAAATATTAATGTAATTCTGCCAGTATTTGCTTATTTTTAATTTTCGGTTYTTTCAATTTCTCTACTTTATCCCGACCAATTTCAAATCTCTGCCCATTCAAATTCCCCTGCAAACCCCACATCTTTTGAGCTTGAATCTCCAAATATTAATTTATCTCTGCCCGTATTCCCTTATTTCAGATTCTCGGTTCCTTTTTTTATACCGACAAATATCAAATCTCTGCCCATTCAAACCCTCACCAAATATTTTCACGTGTTCATCTCGATTTCTGACATTCAATTCATTTTTCCTTTACGCGTACTGAATTATGTTAATGTGTATTTTGCAATATGTTTCATTTTCCGATAATAAAAAACTTTTCATCAAAATATTCTGTTGTTTTGTATTTTTTTTTTGTTTCTTGTAGTTTCAAACCTCTGCCATATCGAATTGATCGAAAAAACCTATTTTTTCAGAGAATTTGTGGTTTTTTCAGCTAAATTTAGTTTCAGACCGTTGCCTGTCATTGGTTCAGTGCTTCAGTGTCCAATACTGCATATTTTCATGTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGTTTTCGTATTTATTGAATTT</pcr_primer_p1>
		<pcr_primer_p2>GAGATTCAAGCTCAAAAGATGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGTGTTTTCGTATTTATTGAATTTTTTCACCCCTACTTATATATATAAATATCCTCCAAAATTCCCCAGAAATTTTCCTCCAAACCCAACATCTCTTGAACTAGAATCTCTAAATATTAATGTAATTCTGCCAGTATTTGCTTATTTTTAATTTTCGGTTCTTTCAATTTCTCTACTTTATCCCGACCAATTTCAAATCTCTGCCCATTCAAATTCCCCTGCAAACCCCACATCTTTTGAGCTTGAATCTC</canonical_amplicon>
		<polymorphic_amplicon>TGTGTTTTCGTATTTATTGAATTTTTTCACCCCTACTTATATATATAAATATCCTCCAAAATTCCCCAGAAATTTTCCTCCAAACCCAACATCTCTTGAACTAGAATCTCTAAATATTAATGTAATTCTGCCAGTATTTGCTTATTTTTAATTTTCGGTTYTTTCAATTTCTCTACTTTATCCCGACCAATTTCAAATCTCTGCCCATTCAAATTCCCCTGCAAACCCCACATCTTTTGAGCTTGAATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39180</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>301044</contig_pos>
        <strand>+</strand>
        <context>TTTTCGGTTY[C/T]TTCAATTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATATTAATGTAATTCTGCCAGTATTTGCTTATTTTTAATTTTCGGTTC</left_flank>
        <right_flank>TTCAATTTCTCTACTTTATCCCGACCAATTTCAAATCTCTGCCCATTCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTGTGCTCGCCTACTTCATGATTTCCTGCAGAAATGCCCCGATGGGAAGGAGGAGAAATTCCTCAAAAAAATCCTCGCTAAGCAGCTGGACTTCACGGATCCAACCCAAACTTTTTTCTTCCGCGAGATCATTTCCACTATCGCAATTTACAACGAAGACACTGATTGTTGGACGTTGAAGAAAATGTATCAAGAAGCGAGAATCAAGAGAAAGGATGCTGTTAACACCTCGGAAGATCATTCGCCTCCTAGATCCAAGAAACATAGGAGATCGATGGAAGATTCGTCAAACCAACCATCGACATCTACCCAAGCTTACCAGACGGACAATTAAAGTGTGTTTTCGTATTTATTGAATTTTTTCACCCCTACTTATATATATAAATATCCTCCAAAATTCCCCAGAAATTTTCCTCCAAACCCAACATCTCTTGAACTAGAATCTCTAAATATTAATGTAATTCTGCCAGTATTTGCTTATTTTTAATTTTCGGTTCTTTCAATTTCTCTACTTTATCCCGACCAATTTCAAATCTCTGCCCATTCAAATTCCCCTGCAAACCCCACATCTTTTGAGCTTGAATCTCCAAATATTAATTTATCTCTGCCCGTATTCCCTTATTTCAGATTCTCGGTTCCTTTTTTTATACCGACAAATATCAAATCTCTGCCCATTCAAACCCTCACCAAATATTTTCACGTGTTCATCTCGATTTCTGACATTCAATTCATTTTTCCTTTACGCGTACTGAATTATGTTAATGTGTATTTTGCAATATGTTTCATTTTCCGATAATAAAAAACTTTTCATCAAAATATTCTGTTGTTTTGTATTTTTTTTTTGTTTCTTGTAGTTTCAAACCTCTGCCATATCGAATTGATCGAAAAAACCTATTTTTTCAGAGAATTTGTGGTTTTTTCAGCTAAATTTAGTTTCAGACCGTTGCCTGTCATTGGTTCAGTGCTTCAGTGTCCAATACTGCATATTTTCATGTCTG</canonical>
            <polymorphic>ATGTGTGCTCGCCTACTTCATGATTTCCTGCAGAAATGCCCCGATGGGAAGGAGGAGAAATTCCTCAAAAAAATCCTCGCTAAGCAGCTGGACTTCACGGATCCAACCCAAACTTTTTTCTTCCGCGAGATCATTTCCACTATCGCAATTTACAACGAAGACACTGATTGTTGGACGTTGAAGAAAATGTATCAAGAAGCGAGAATCAAGAGAAAGGATGCTGTTAACACCTCGGAAGATCATTCGCCTCCTAGATCCAAGAAACATAGGAGATCGATGGAAGATTCGTCAAACCAACCATCGACATCTACCCAAGCTTACCAGACGGACAATTAAAGTGTGTTTTCGTATTTATTGAATTTTTTCACCCCTACTTATATATATAAATATCCTCCAAAATTCCCCAGAAATTTTCCTCCAAACCCAACATCTCTTGAACTAGAATCTCTAAATATTAATGTAATTCTGCCAGTATTTGCTTATTTTTAATTTTCGGTTCYTTCAATTTCTCTACTTTATCCCGACCAATTTCAAATCTCTGCCCATTCAAATTCCCCTGCAAACCCCACATCTTTTGAGCTTGAATCTCCAAATATTAATTTATCTCTGCCCGTATTCCCTTATTTCAGATTCTCGGTTCCTTTTTTTATACCGACAAATATCAAATCTCTGCCCATTCAAACCCTCACCAAATATTTTCACGTGTTCATCTCGATTTCTGACATTCAATTCATTTTTCCTTTACGCGTACTGAATTATGTTAATGTGTATTTTGCAATATGTTTCATTTTCCGATAATAAAAAACTTTTCATCAAAATATTCTGTTGTTTTGTATTTTTTTTTTGTTTCTTGTAGTTTCAAACCTCTGCCATATCGAATTGATCGAAAAAACCTATTTTTTCAGAGAATTTGTGGTTTTTTCAGCTAAATTTAGTTTCAGACCGTTGCCTGTCATTGGTTCAGTGCTTCAGTGTCCAATACTGCATATTTTCATGTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTGTTTTCGTATTTATTGAATTT</pcr_primer_p1>
		<pcr_primer_p2>GAGATTCAAGCTCAAAAGATGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGTGTTTTCGTATTTATTGAATTTTTTCACCCCTACTTATATATATAAATATCCTCCAAAATTCCCCAGAAATTTTCCTCCAAACCCAACATCTCTTGAACTAGAATCTCTAAATATTAATGTAATTCTGCCAGTATTTGCTTATTTTTAATTTTCGGTTCTTTCAATTTCTCTACTTTATCCCGACCAATTTCAAATCTCTGCCCATTCAAATTCCCCTGCAAACCCCACATCTTTTGAGCTTGAATCTC</canonical_amplicon>
		<polymorphic_amplicon>TGTGTTTTCGTATTTATTGAATTTTTTCACCCCTACTTATATATATAAATATCCTCCAAAATTCCCCAGAAATTTTCCTCCAAACCCAACATCTCTTGAACTAGAATCTCTAAATATTAATGTAATTCTGCCAGTATTTGCTTATTTTTAATTTTCGGTTCYTTCAATTTCTCTACTTTATCCCGACCAATTTCAAATCTCTGCCCATTCAAATTCCCCTGCAAACCCCACATCTTTTGAGCTTGAATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39181</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>301380</contig_pos>
        <strand>+</strand>
        <context>TTGTTTTGTA[C/T]TTTTTTTTTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATTTTCCGATAATAAAAAACTTTTCATCAAAATATTCTGTTGTTTTGTA</left_flank>
        <right_flank>TTTTTTTTTGTTTCTTGTAGTTTCAAACCTCTGCCATATCGAATTGATCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTGTGTTTTCGTATTTATTGAATTTTTTCACCCCTACTTATATATATAAATATCCTCCAAAATTCCCCAGAAATTTTCCTCCAAACCCAACATCTCTTGAACTAGAATCTCTAAATATTAATGTAATTCTGCCAGTATTTGCTTATTTTTAATTTTCGGTTCTTTCAATTTCTCTACTTTATCCCGACCAATTTCAAATCTCTGCCCATTCAAATTCCCCTGCAAACCCCACATCTTTTGAGCTTGAATCTCCAAATATTAATTTATCTCTGCCCGTATTCCCTTATTTCAGATTCTCGGTTCCTTTTTTTATACCGACAAATATCAAATCTCTGCCCATTCAAACCCTCACCAAATATTTTCACGTGTTCATCTCGATTTCTGACATTCAATTCATTTTTCCTTTACGCGTACTGAATTATGTTAATGTGTATTTTGCAATATGTTTCATTTTCCGATAATAAAAAACTTTTCATCAAAATATTCTGTTGTTTTGTATTTTTTTTTTGTTTCTTGTAGTTTCAAACCTCTGCCATATCGAATTGATCGAAAAAACCTATTTTTTCAGAGAATTTGTGGTTTTTTCAGCTAAATTTAGTTTCAGACCGTTGCCTGTCATTGGTTCAGTGCTTCAGTGTCCAATACTGCATATTTTCATGTCTGTACTATGAAAAATTTTTAAAAAGTTTTTCTCTTTAAAATTCATCGATTTGAAATGAGAAAATAGTTGAAAAACTTGCAAAAATATCGTTTTAATGAAAAAAGTGACCGACAAAAAATCAAGGAAAAAGTGTGCGGCATGGTGCGAACGTACCAGCCCCGCCCACTTTCCCGTGCCGCAACGTAATATTTTGCATTTGTAGGCAGAATTCACTGATTTTCATAGAAAAACGTTTGTTTTCGTGTGATTTAGAAATTTTATATTATTTTCACAATTTCAGAAAAACTACTAAGTGATTCGAAAATCTCAAAAATAAGAAAAATGCTGCTTCAACTCAC</canonical>
            <polymorphic>AGTGTGTTTTCGTATTTATTGAATTTTTTCACCCCTACTTATATATATAAATATCCTCCAAAATTCCCCAGAAATTTTCCTCCAAACCCAACATCTCTTGAACTAGAATCTCTAAATATTAATGTAATTCTGCCAGTATTTGCTTATTTTTAATTTTCGGTTCTTTCAATTTCTCTACTTTATCCCGACCAATTTCAAATCTCTGCCCATTCAAATTCCCCTGCAAACCCCACATCTTTTGAGCTTGAATCTCCAAATATTAATTTATCTCTGCCCGTATTCCCTTATTTCAGATTCTCGGTTCCTTTTTTTATACCGACAAATATCAAATCTCTGCCCATTCAAACCCTCACCAAATATTTTCACGTGTTCATCTCGATTTCTGACATTCAATTCATTTTTCCTTTACGCGTACTGAATTATGTTAATGTGTATTTTGCAATATGTTTCATTTTCCGATAATAAAAAACTTTTCATCAAAATATTCTGTTGTTTTGTAYTTTTTTTTTGTTTCTTGTAGTTTCAAACCTCTGCCATATCGAATTGATCGAAAAAACCTATTTTTTCAGAGAATTTGTGGTTTTTTCAGCTAAATTTAGTTTCAGACCGTTGCCTGTCATTGGTTCAGTGCTTCAGTGTCCAATACTGCATATTTTCATGTCTGTACTATGAAAAATTTTTAAAAAGTTTTTCTCTTTAAAATTCATCGATTTGAAATGAGAAAATAGTTGAAAAACTTGCAAAAATATCGTTTTAATGAAAAAAGTGACCGACAAAAAATCAAGGAAAAAGTGTGCGGCATGGTGCGAACGTACCAGCCCCGCCCACTTTCCCGTGCCGCAACGTAATATTTTGCATTTGTAGGCAGAATTCACTGATTTTCATAGAAAAACGTTTGTTTTCGTGTGATTTAGAAATTTTATATTATTTTCACAATTTCAGAAAAACTACTAAGTGATTCGAAAATCTCAAAAATAAGAAAAATGCTGCTTCAACTCAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTACGCGTACTGAATTATGTT</pcr_primer_p1>
		<pcr_primer_p2>ATATGCAGTATTGGACACTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTACGCGTACTGAATTATGTTAATGTGTATTTTGCAATATGTTTCATTTTCCGATAATAAAAAACTTTTCATCAAAATATTCTGTTGTTTTGTATTTTTTTTTTGTTTCTTGTAGTTTCAAACCTCTGCCATATCGAATTGATCGAAAAAACCTATTTTTTCAGAGAATTTGTGGTTTTTTCAGCTAAATTTAGTTTCAGACCGTTGCCTGTCATTGGTTCAGTGCTTCAGTGTCCAATACTGCATAT</canonical_amplicon>
		<polymorphic_amplicon>CTTTACGCGTACTGAATTATGTTAATGTGTATTTTGCAATATGTTTCATTTTCCGATAATAAAAAACTTTTCATCAAAATATTCTGTTGTTTTGTAYTTTTTTTTTGTTTCTTGTAGTTTCAAACCTCTGCCATATCGAATTGATCGAAAAAACCTATTTTTTCAGAGAATTTGTGGTTTTTTCAGCTAAATTTAGTTTCAGACCGTTGCCTGTCATTGGTTCAGTGCTTCAGTGTCCAATACTGCATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39182</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>301414</contig_pos>
        <strand></strand>
        <context>CAAACCTCTG[C/T]CATATCGAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCTGTTGTTTTGTATTTTTTTTTTGTTTCTTGTAGTTTCAAACCTCTG</left_flank>
        <right_flank>CATATCGAATTGATCGAAAAAACCTATTTTTTCAGAGAATTTGTGGTTTT</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACTTATATATATAAATATCCTCCAAAATTCCCCAGAAATTTTCCTCCAAACCCAACATCTCTTGAACTAGAATCTCTAAATATTAATGTAATTCTGCCAGTATTTGCTTATTTTTAATTTTCGGTTCTTTCAATTTCTCTACTTTATCCCGACCAATTTCAAATCTCTGCCCATTCAAATTCCCCTGCAAACCCCACATCTTTTGAGCTTGAATCTCCAAATATTAATTTATCTCTGCCCGTATTCCCTTATTTCAGATTCTCGGTTCCTTTTTTTATACCGACAAATATCAAATCTCTGCCCATTCAAACCCTCACCAAATATTTTCACGTGTTCATCTCGATTTCTGACATTCAATTCATTTTTCCTTTACGCGTACTGAATTATGTTAATGTGTATTTTGCAATATGTTTCATTTTCCGATAATAAAAAACTTTTCATCAAAATATTCTGTTGTTTTGTATTTTTTTTTTGTTTCTTGTAGTTTCAAACCTCTGCCATATCGAATTGATCGAAAAAACCTATTTTTTCAGAGAATTTGTGGTTTTTTCAGCTAAATTTAGTTTCAGACCGTTGCCTGTCATTGGTTCAGTGCTTCAGTGTCCAATACTGCATATTTTCATGTCTGTACTATGAAAAATTTTTAAAAAGTTTTTCTCTTTAAAATTCATCGATTTGAAATGAGAAAATAGTTGAAAAACTTGCAAAAATATCGTTTTAATGAAAAAAGTGACCGACAAAAAATCAAGGAAAAAGTGTGCGGCATGGTGCGAACGTACCAGCCCCGCCCACTTTCCCGTGCCGCAACGTAATATTTTGCATTTGTAGGCAGAATTCACTGATTTTCATAGAAAAACGTTTGTTTTCGTGTGATTTAGAAATTTTATATTATTTTCACAATTTCAGAAAAACTACTAAGTGATTCGAAAATCTCAAAAATAAGAAAAATGCTGCTTCAACTCACGAAAACCAGAAATTTCGCGGGTTTTTTTGCTTTA</canonical>
            <polymorphic>CTACTTATATATATAAATATCCTCCAAAATTCCCCAGAAATTTTCCTCCAAACCCAACATCTCTTGAACTAGAATCTCTAAATATTAATGTAATTCTGCCAGTATTTGCTTATTTTTAATTTTCGGTTCTTTCAATTTCTCTACTTTATCCCGACCAATTTCAAATCTCTGCCCATTCAAATTCCCCTGCAAACCCCACATCTTTTGAGCTTGAATCTCCAAATATTAATTTATCTCTGCCCGTATTCCCTTATTTCAGATTCTCGGTTCCTTTTTTTATACCGACAAATATCAAATCTCTGCCCATTCAAACCCTCACCAAATATTTTCACGTGTTCATCTCGATTTCTGACATTCAATTCATTTTTCCTTTACGCGTACTGAATTATGTTAATGTGTATTTTGCAATATGTTTCATTTTCCGATAATAAAAAACTTTTCATCAAAATATTCTGTTGTTTTGTATTTTTTTTTTGTTTCTTGTAGTTTCAAACCTCTGYCATATCGAATTGATCGAAAAAACCTATTTTTTCAGAGAATTTGTGGTTTTTTCAGCTAAATTTAGTTTCAGACCGTTGCCTGTCATTGGTTCAGTGCTTCAGTGTCCAATACTGCATATTTTCATGTCTGTACTATGAAAAATTTTTAAAAAGTTTTTCTCTTTAAAATTCATCGATTTGAAATGAGAAAATAGTTGAAAAACTTGCAAAAATATCGTTTTAATGAAAAAAGTGACCGACAAAAAATCAAGGAAAAAGTGTGCGGCATGGTGCGAACGTACCAGCCCCGCCCACTTTCCCGTGCCGCAACGTAATATTTTGCATTTGTAGGCAGAATTCACTGATTTTCATAGAAAAACGTTTGTTTTCGTGTGATTTAGAAATTTTATATTATTTTCACAATTTCAGAAAAACTACTAAGTGATTCGAAAATCTCAAAAATAAGAAAAATGCTGCTTCAACTCACGAAAACCAGAAATTTCGCGGGTTTTTTTGCTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTACGCGTACTGAATTATGTT</pcr_primer_p1>
		<pcr_primer_p2>ATATGCAGTATTGGACACTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTACGCGTACTGAATTATGTTAATGTGTATTTTGCAATATGTTTCATTTTCCGATAATAAAAAACTTTTCATCAAAATATTCTGTTGTTTTGTATTTTTTTTTTGTTTCTTGTAGTTTCAAACCTCTGCCATATCGAATTGATCGAAAAAACCTATTTTTTCAGAGAATTTGTGGTTTTTTCAGCTAAATTTAGTTTCAGACCGTTGCCTGTCATTGGTTCAGTGCTTCAGTGTCCAATACTGCATAT</canonical_amplicon>
		<polymorphic_amplicon>CTTTACGCGTACTGAATTATGTTAATGTGTATTTTGCAATATGTTTCATTTTCCGATAATAAAAAACTTTTCATCAAAATATTCTGTTGTTTTGTATTTTTTTTTTGTTTCTTGTAGTTTCAAACCTCTGYCATATCGAATTGATCGAAAAAACCTATTTTTTCAGAGAATTTGTGGTTTTTTCAGCTAAATTTAGTTTCAGACCGTTGCCTGTCATTGGTTCAGTGCTTCAGTGTCCAATACTGCATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39183</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>301428</contig_pos>
        <strand>+</strand>
        <context>ATCGAATTGA[G/T]CGAAAAAACC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATTTTTTTTTTGTTTCTTGTAGTTTCAAACCTCTGCCATATCGAATTGA</left_flank>
        <right_flank>CGAAAAAACCTATTTTTTCAGAGAATTTGTGGTTTTTTCAGCTAAATTTA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATATCCTCCAAAATTCCCCAGAAATTTTCCTCCAAACCCAACATCTCTTGAACTAGAATCTCTAAATATTAATGTAATTCTGCCAGTATTTGCTTATTTTTAATTTTCGGTTCTTTCAATTTCTCTACTTTATCCCGACCAATTTCAAATCTCTGCCCATTCAAATTCCCCTGCAAACCCCACATCTTTTGAGCTTGAATCTCCAAATATTAATTTATCTCTGCCCGTATTCCCTTATTTCAGATTCTCGGTTCCTTTTTTTATACCGACAAATATCAAATCTCTGCCCATTCAAACCCTCACCAAATATTTTCACGTGTTCATCTCGATTTCTGACATTCAATTCATTTTTCCTTTACGCGTACTGAATTATGTTAATGTGTATTTTGCAATATGTTTCATTTTCCGATAATAAAAAACTTTTCATCAAAATATTCTGTTGTTTTGTATTTTTTTTTTGTTTCTTGTAGTTTCAAACCTCTGCCATATCGAATTGATCGAAAAAACCTATTTTTTCAGAGAATTTGTGGTTTTTTCAGCTAAATTTAGTTTCAGACCGTTGCCTGTCATTGGTTCAGTGCTTCAGTGTCCAATACTGCATATTTTCATGTCTGTACTATGAAAAATTTTTAAAAAGTTTTTCTCTTTAAAATTCATCGATTTGAAATGAGAAAATAGTTGAAAAACTTGCAAAAATATCGTTTTAATGAAAAAAGTGACCGACAAAAAATCAAGGAAAAAGTGTGCGGCATGGTGCGAACGTACCAGCCCCGCCCACTTTCCCGTGCCGCAACGTAATATTTTGCATTTGTAGGCAGAATTCACTGATTTTCATAGAAAAACGTTTGTTTTCGTGTGATTTAGAAATTTTATATTATTTTCACAATTTCAGAAAAACTACTAAGTGATTCGAAAATCTCAAAAATAAGAAAAATGCTGCTTCAACTCACGAAAACCAGAAATTTCGCGGGTTTTTTTGCTTTAAAATGTTTCTGATT</canonical>
            <polymorphic>AAATATCCTCCAAAATTCCCCAGAAATTTTCCTCCAAACCCAACATCTCTTGAACTAGAATCTCTAAATATTAATGTAATTCTGCCAGTATTTGCTTATTTTTAATTTTCGGTTCTTTCAATTTCTCTACTTTATCCCGACCAATTTCAAATCTCTGCCCATTCAAATTCCCCTGCAAACCCCACATCTTTTGAGCTTGAATCTCCAAATATTAATTTATCTCTGCCCGTATTCCCTTATTTCAGATTCTCGGTTCCTTTTTTTATACCGACAAATATCAAATCTCTGCCCATTCAAACCCTCACCAAATATTTTCACGTGTTCATCTCGATTTCTGACATTCAATTCATTTTTCCTTTACGCGTACTGAATTATGTTAATGTGTATTTTGCAATATGTTTCATTTTCCGATAATAAAAAACTTTTCATCAAAATATTCTGTTGTTTTGTATTTTTTTTTTGTTTCTTGTAGTTTCAAACCTCTGCCATATCGAATTGAKCGAAAAAACCTATTTTTTCAGAGAATTTGTGGTTTTTTCAGCTAAATTTAGTTTCAGACCGTTGCCTGTCATTGGTTCAGTGCTTCAGTGTCCAATACTGCATATTTTCATGTCTGTACTATGAAAAATTTTTAAAAAGTTTTTCTCTTTAAAATTCATCGATTTGAAATGAGAAAATAGTTGAAAAACTTGCAAAAATATCGTTTTAATGAAAAAAGTGACCGACAAAAAATCAAGGAAAAAGTGTGCGGCATGGTGCGAACGTACCAGCCCCGCCCACTTTCCCGTGCCGCAACGTAATATTTTGCATTTGTAGGCAGAATTCACTGATTTTCATAGAAAAACGTTTGTTTTCGTGTGATTTAGAAATTTTATATTATTTTCACAATTTCAGAAAAACTACTAAGTGATTCGAAAATCTCAAAAATAAGAAAAATGCTGCTTCAACTCACGAAAACCAGAAATTTCGCGGGTTTTTTTGCTTTAAAATGTTTCTGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>329 253 163 159 87 9</canonical_bands>
                <polymorphic_bands>329 253 168 163 87</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTACGCGTACTGAATTATGTT</pcr_primer_p1>
		<pcr_primer_p2>ATATGCAGTATTGGACACTGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTACGCGTACTGAATTATGTTAATGTGTATTTTGCAATATGTTTCATTTTCCGATAATAAAAAACTTTTCATCAAAATATTCTGTTGTTTTGTATTTTTTTTTTGTTTCTTGTAGTTTCAAACCTCTGCCATATCGAATTGATCGAAAAAACCTATTTTTTCAGAGAATTTGTGGTTTTTTCAGCTAAATTTAGTTTCAGACCGTTGCCTGTCATTGGTTCAGTGCTTCAGTGTCCAATACTGCATAT</canonical_amplicon>
		<polymorphic_amplicon>CTTTACGCGTACTGAATTATGTTAATGTGTATTTTGCAATATGTTTCATTTTCCGATAATAAAAAACTTTTCATCAAAATATTCTGTTGTTTTGTATTTTTTTTTTGTTTCTTGTAGTTTCAAACCTCTGCCATATCGAATTGAKCGAAAAAACCTATTTTTTCAGAGAATTTGTGGTTTTTTCAGCTAAATTTAGTTTCAGACCGTTGCCTGTCATTGGTTCAGTGCTTCAGTGTCCAATACTGCATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39184</snp_id>
        <super_contig>c013500957.Contig1</super_contig>
        <contig_pos>301534</contig_pos>
        <strand>+</strand>
        <context>TACTGCATAT[C/T]TTCATGTCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGACCGTTGCCTGTCATTGGTTCAGTGCTTCAGTGTCCAATACTGCATAT</left_flank>
        <right_flank>TTCATGTCTGTACTATGAAAAATTTTTAAAAAGTTTTTCTCTTTAAAATT</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCGGTTCTTTCAATTTCTCTACTTTATCCCGACCAATTTCAAATCTCTGCCCATTCAAATTCCCCTGCAAACCCCACATCTTTTGAGCTTGAATCTCCAAATATTAATTTATCTCTGCCCGTATTCCCTTATTTCAGATTCTCGGTTCCTTTTTTTATACCGACAAATATCAAATCTCTGCCCATTCAAACCCTCACCAAATATTTTCACGTGTTCATCTCGATTTCTGACATTCAATTCATTTTTCCTTTACGCGTACTGAATTATGTTAATGTGTATTTTGCAATATGTTTCATTTTCCGATAATAAAAAACTTTTCATCAAAATATTCTGTTGTTTTGTATTTTTTTTTTGTTTCTTGTAGTTTCAAACCTCTGCCATATCGAATTGATCGAAAAAACCTATTTTTTCAGAGAATTTGTGGTTTTTTCAGCTAAATTTAGTTTCAGACCGTTGCCTGTCATTGGTTCAGTGCTTCAGTGTCCAATACTGCATATTTTCATGTCTGTACTATGAAAAATTTTTAAAAAGTTTTTCTCTTTAAAATTCATCGATTTGAAATGAGAAAATAGTTGAAAAACTTGCAAAAATATCGTTTTAATGAAAAAAGTGACCGACAAAAAATCAAGGAAAAAGTGTGCGGCATGGTGCGAACGTACCAGCCCCGCCCACTTTCCCGTGCCGCAACGTAATATTTTGCATTTGTAGGCAGAATTCACTGATTTTCATAGAAAAACGTTTGTTTTCGTGTGATTTAGAAATTTTATATTATTTTCACAATTTCAGAAAAACTACTAAGTGATTCGAAAATCTCAAAAATAAGAAAAATGCTGCTTCAACTCACGAAAACCAGAAATTTCGCGGGTTTTTTTGCTTTAAAATGTTTCTGATTATAGAATGGAATTTTCGCATGTTTCTAGTGAGTTAATAACCAAAAATCTTCTAACAATAAATCTCTAAGGTCTAATCGCAAAAAAGAAAATTAGCTACAATAATGT</canonical>
            <polymorphic>TTTCGGTTCTTTCAATTTCTCTACTTTATCCCGACCAATTTCAAATCTCTGCCCATTCAAATTCCCCTGCAAACCCCACATCTTTTGAGCTTGAATCTCCAAATATTAATTTATCTCTGCCCGTATTCCCTTATTTCAGATTCTCGGTTCCTTTTTTTATACCGACAAATATCAAATCTCTGCCCATTCAAACCCTCACCAAATATTTTCACGTGTTCATCTCGATTTCTGACATTCAATTCATTTTTCCTTTACGCGTACTGAATTATGTTAATGTGTATTTTGCAATATGTTTCATTTTCCGATAATAAAAAACTTTTCATCAAAATATTCTGTTGTTTTGTATTTTTTTTTTGTTTCTTGTAGTTTCAAACCTCTGCCATATCGAATTGATCGAAAAAACCTATTTTTTCAGAGAATTTGTGGTTTTTTCAGCTAAATTTAGTTTCAGACCGTTGCCTGTCATTGGTTCAGTGCTTCAGTGTCCAATACTGCATATYTTCATGTCTGTACTATGAAAAATTTTTAAAAAGTTTTTCTCTTTAAAATTCATCGATTTGAAATGAGAAAATAGTTGAAAAACTTGCAAAAATATCGTTTTAATGAAAAAAGTGACCGACAAAAAATCAAGGAAAAAGTGTGCGGCATGGTGCGAACGTACCAGCCCCGCCCACTTTCCCGTGCCGCAACGTAATATTTTGCATTTGTAGGCAGAATTCACTGATTTTCATAGAAAAACGTTTGTTTTCGTGTGATTTAGAAATTTTATATTATTTTCACAATTTCAGAAAAACTACTAAGTGATTCGAAAATCTCAAAAATAAGAAAAATGCTGCTTCAACTCACGAAAACCAGAAATTTCGCGGGTTTTTTTGCTTTAAAATGTTTCTGATTATAGAATGGAATTTTCGCATGTTTCTAGTGAGTTAATAACCAAAAATCTTCTAACAATAAATCTCTAAGGTCTAATCGCAAAAAAGAAAATTAGCTACAATAATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTTGTAGTTTCAAACCTCTG</pcr_primer_p1>
		<pcr_primer_p2>TTAAAACGATATTTTTGCAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTCTTGTAGTTTCAAACCTCTGCCATATCGAATTGATCGAAAAAACCTATTTTTTCAGAGAATTTGTGGTTTTTTCAGCTAAATTTAGTTTCAGACCGTTGCCTGTCATTGGTTCAGTGCTTCAGTGTCCAATACTGCATATTTTCATGTCTGTACTATGAAAAATTTTTAAAAAGTTTTTCTCTTTAAAATTCATCGATTTGAAATGAGAAAATAGTTGAAAAACTTGCAAAAATATCGTTTTAA</canonical_amplicon>
		<polymorphic_amplicon>TTTCTTGTAGTTTCAAACCTCTGCCATATCGAATTGATCGAAAAAACCTATTTTTTCAGAGAATTTGTGGTTTTTTCAGCTAAATTTAGTTTCAGACCGTTGCCTGTCATTGGTTCAGTGCTTCAGTGTCCAATACTGCATATYTTCATGTCTGTACTATGAAAAATTTTTAAAAAGTTTTTCTCTTTAAAATTCATCGATTTGAAATGAGAAAATAGTTGAAAAACTTGCAAAAATATCGTTTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39185</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>57441</contig_pos>
        <strand>+</strand>
        <context>TTTCTCCTCC[C/T]CCAAAAGCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAATCTCAAAAGCTGAAGAAACTTTTTATATTAACCTCTTTCTCCTCC</left_flank>
        <right_flank>CCAAAAGCCAAAAAACCGTCTGCTGGGGGGGATGCCTGTTGGGTTCCGCT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGGAAAAGTTGTGACAATGGGAAGTGTGATGGGTTCAATTGGAGACAACGCATGTGAGATAATAATATTTCTCTAGATTGCTCAATCCAAAACGATCTAACCGAATCCGAAATGTCGCTGGTCATAATATAAAAATATATCATTTGAAAAGCGAGGACCCGATCGAGCGCAAGTGATTTTTCGTACAGGGATCGAATGTCTCTCAAAAACAATGGTACAAATGTTTGGTTTCTCAAATCGAACCGGAAAAATGCTAGAATAACTAGCACTAGCACGTCGAGCGTAGTTTGAAGGGTCATGGTGTTACCTGCAATGAAGTGGCTATGGCTCATTCTGTTTTCGAGACGAATGAAGTAAAACGGAGGGCAAAAATTATATTTTACAGAGTTCAGAAAATGAAACAAATAGATAACTTGAGAAATTCAAAAATATGCCAAGTACATTTCATAAAATCTCAAAAGCTGAAGAAACTTTTTATATTAACCTCTTTCTCCTCCCCCAAAAGCCAAAAAACCGTCTGCTGGGGGGGATGCCTGTTGGGTTCCGCTTGCCGCTTATTTACAGCCGCTCAAGGGAACAGAGAATCGGAAGGGTGAGGGAAGGTGTCGTAAAAGTATCGAGTGATCACAAATGTTTATACTAACTAATTAGAATGTATTTATAATTAACGAGAAGATGTTCTTCAAAGAAAAACCTAAAAAGATATAATTATTGGAATGAATAGAGGCCTCATAGTTCTTTATGTACCTTGAATTTGCTGTTTTGTGAAAATATCGAAATTCTTAAAAAACTAAAATATGTTATCCATAAGGAACTGGAGTTTTGAAAAAAAGTATGGGAAAGATTATGGTATGTAGATGAAGAAAAAAAGTTGGTATTCAAAAAAAACTTCAGGAACTTAGAAAGAGTAGGCGTACCTTTGTTTCAACGTCAAATAAACGGAATGGATATTGAAGGAAAATATTTTTGGAAAATGAAAAATGGGCGGAGCATTCCCA</canonical>
            <polymorphic>CTCGGAAAAGTTGTGACAATGGGAAGTGTGATGGGTTCAATTGGAGACAACGCATGTGAGATAATAATATTTCTCTAGATTGCTCAATCCAAAACGATCTAACCGAATCCGAAATGTCGCTGGTCATAATATAAAAATATATCATTTGAAAAGCGAGGACCCGATCGAGCGCAAGTGATTTTTCGTACAGGGATCGAATGTCTCTCAAAAACAATGGTACAAATGTTTGGTTTCTCAAATCGAACCGGAAAAATGCTAGAATAACTAGCACTAGCACGTCGAGCGTAGTTTGAAGGGTCATGGTGTTACCTGCAATGAAGTGGCTATGGCTCATTCTGTTTTCGAGACGAATGAAGTAAAACGGAGGGCAAAAATTATATTTTACAGAGTTCAGAAAATGAAACAAATAGATAACTTGAGAAATTCAAAAATATGCCAAGTACATTTCATAAAATCTCAAAAGCTGAAGAAACTTTTTATATTAACCTCTTTCTCCTCCYCCAAAAGCCAAAAAACCGTCTGCTGGGGGGGATGCCTGTTGGGTTCCGCTTGCCGCTTATTTACAGCCGCTCAAGGGAACAGAGAATCGGAAGGGTGAGGGAAGGTGTCGTAAAAGTATCGAGTGATCACAAATGTTTATACTAACTAATTAGAATGTATTTATAATTAACGAGAAGATGTTCTTCAAAGAAAAACCTAAAAAGATATAATTATTGGAATGAATAGAGGCCTCATAGTTCTTTATGTACCTTGAATTTGCTGTTTTGTGAAAATATCGAAATTCTTAAAAAACTAAAATATGTTATCCATAAGGAACTGGAGTTTTGAAAAAAAGTATGGGAAAGATTATGGTATGTAGATGAAGAAAAAAAGTTGGTATTCAAAAAAAACTTCAGGAACTTAGAAAGAGTAGGCGTACCTTTGTTTCAACGTCAAATAAACGGAATGGATATTGAAGGAAAATATTTTTGGAAAATGAAAAATGGGCGGAGCATTCCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACAGAGTTCAGAAAATGAAACAA</pcr_primer_p1>
		<pcr_primer_p2>TTTGTGATCACTCGATACTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACAGAGTTCAGAAAATGAAACAAATAGATAACTTGAGAAATTCAAAAATATGCCAAGTACATTTCATAAAATCTCAAAAGCTGAAGAAACTTTTTATATTAACCTCTTTCTCCTCCCCCAAAAGCCAAAAAACCGTCTGCTGGGGGGGATGCCTGTTGGGTTCCGCTTGCCGCTTATTTACAGCCGCTCAAGGGAACAGAGAATCGGAAGGGTGAGGGAAGGTGTCGTAAAAGTATCGAGTGATCACAAA</canonical_amplicon>
		<polymorphic_amplicon>ACAGAGTTCAGAAAATGAAACAAATAGATAACTTGAGAAATTCAAAAATATGCCAAGTACATTTCATAAAATCTCAAAAGCTGAAGAAACTTTTTATATTAACCTCTTTCTCCTCCYCCAAAAGCCAAAAAACCGTCTGCTGGGGGGGATGCCTGTTGGGTTCCGCTTGCCGCTTATTTACAGCCGCTCAAGGGAACAGAGAATCGGAAGGGTGAGGGAAGGTGTCGTAAAAGTATCGAGTGATCACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39186</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>57590</contig_pos>
        <strand>+</strand>
        <context>ATACTAACTA[A/G]TTAGAATGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGGAAGGTGTCGTAAAAGTATCGAGTGATCACAAATGTTTATACTAACTA</left_flank>
        <right_flank>TTAGAATGTATTTATAATTAACGAGAAGATGTTCTTCAAAGAAAAACCTA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGCGAGGACCCGATCGAGCGCAAGTGATTTTTCGTACAGGGATCGAATGTCTCTCAAAAACAATGGTACAAATGTTTGGTTTCTCAAATCGAACCGGAAAAATGCTAGAATAACTAGCACTAGCACGTCGAGCGTAGTTTGAAGGGTCATGGTGTTACCTGCAATGAAGTGGCTATGGCTCATTCTGTTTTCGAGACGAATGAAGTAAAACGGAGGGCAAAAATTATATTTTACAGAGTTCAGAAAATGAAACAAATAGATAACTTGAGAAATTCAAAAATATGCCAAGTACATTTCATAAAATCTCAAAAGCTGAAGAAACTTTTTATATTAACCTCTTTCTCCTCCCCCAAAAGCCAAAAAACCGTCTGCTGGGGGGGATGCCTGTTGGGTTCCGCTTGCCGCTTATTTACAGCCGCTCAAGGGAACAGAGAATCGGAAGGGTGAGGGAAGGTGTCGTAAAAGTATCGAGTGATCACAAATGTTTATACTAACTAATTAGAATGTATTTATAATTAACGAGAAGATGTTCTTCAAAGAAAAACCTAAAAAGATATAATTATTGGAATGAATAGAGGCCTCATAGTTCTTTATGTACCTTGAATTTGCTGTTTTGTGAAAATATCGAAATTCTTAAAAAACTAAAATATGTTATCCATAAGGAACTGGAGTTTTGAAAAAAAGTATGGGAAAGATTATGGTATGTAGATGAAGAAAAAAAGTTGGTATTCAAAAAAAACTTCAGGAACTTAGAAAGAGTAGGCGTACCTTTGTTTCAACGTCAAATAAACGGAATGGATATTGAAGGAAAATATTTTTGGAAAATGAAAAATGGGCGGAGCATTCCCAGCGGCCTTCCTAAAGTCCAAGTAAATGGTAAATGGCGTAACAAAAGCGGCGAAATGCAACTAATACTGATGGCGCAATAACATTACACGGGTGGTGAAAAAAATACAGTAACACCTGTCCCTCCTCTTTTTCGGCAAATCCTTTTTTTT</canonical>
            <polymorphic>AAAGCGAGGACCCGATCGAGCGCAAGTGATTTTTCGTACAGGGATCGAATGTCTCTCAAAAACAATGGTACAAATGTTTGGTTTCTCAAATCGAACCGGAAAAATGCTAGAATAACTAGCACTAGCACGTCGAGCGTAGTTTGAAGGGTCATGGTGTTACCTGCAATGAAGTGGCTATGGCTCATTCTGTTTTCGAGACGAATGAAGTAAAACGGAGGGCAAAAATTATATTTTACAGAGTTCAGAAAATGAAACAAATAGATAACTTGAGAAATTCAAAAATATGCCAAGTACATTTCATAAAATCTCAAAAGCTGAAGAAACTTTTTATATTAACCTCTTTCTCCTCCCCCAAAAGCCAAAAAACCGTCTGCTGGGGGGGATGCCTGTTGGGTTCCGCTTGCCGCTTATTTACAGCCGCTCAAGGGAACAGAGAATCGGAAGGGTGAGGGAAGGTGTCGTAAAAGTATCGAGTGATCACAAATGTTTATACTAACTARTTAGAATGTATTTATAATTAACGAGAAGATGTTCTTCAAAGAAAAACCTAAAAAGATATAATTATTGGAATGAATAGAGGCCTCATAGTTCTTTATGTACCTTGAATTTGCTGTTTTGTGAAAATATCGAAATTCTTAAAAAACTAAAATATGTTATCCATAAGGAACTGGAGTTTTGAAAAAAAGTATGGGAAAGATTATGGTATGTAGATGAAGAAAAAAAGTTGGTATTCAAAAAAAACTTCAGGAACTTAGAAAGAGTAGGCGTACCTTTGTTTCAACGTCAAATAAACGGAATGGATATTGAAGGAAAATATTTTTGGAAAATGAAAAATGGGCGGAGCATTCCCAGCGGCCTTCCTAAAGTCCAAGTAAATGGTAAATGGCGTAACAAAAGCGGCGAAATGCAACTAATACTGATGGCGCAATAACATTACACGGGTGGTGAAAAAAATACAGTAACACCTGTCCCTCCTCTTTTTCGGCAAATCCTTTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>370 226 223 49 45 44 26 17</canonical_bands>
                <polymorphic_bands>370 243 223 49 45 44 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAAAAGCTGAAGAAACTTTTTAT</pcr_primer_p1>
		<pcr_primer_p2>ATATCTTTTTAGGTTTTTCTTTGAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCAAAAGCTGAAGAAACTTTTTATATTAACCTCTTTCTCCTCCCCCAAAAGCCAAAAAACCGTCTGCTGGGGGGGATGCCTGTTGGGTTCCGCTTGCCGCTTATTTACAGCCGCTCAAGGGAACAGAGAATCGGAAGGGTGAGGGAAGGTGTCGTAAAAGTATCGAGTGATCACAAATGTTTATACTAACTAATTAGAATGTATTTATAATTAACGAGAAGATGTTCTTCAAAGAAAAACCTAAAAAGATAT</canonical_amplicon>
		<polymorphic_amplicon>TCAAAAGCTGAAGAAACTTTTTATATTAACCTCTTTCTCCTCCCCCAAAAGCCAAAAAACCGTCTGCTGGGGGGGATGCCTGTTGGGTTCCGCTTGCCGCTTATTTACAGCCGCTCAAGGGAACAGAGAATCGGAAGGGTGAGGGAAGGTGTCGTAAAAGTATCGAGTGATCACAAATGTTTATACTAACTARTTAGAATGTATTTATAATTAACGAGAAGATGTTCTTCAAAGAAAAACCTAAAAAGATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39187</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>102383</contig_pos>
        <strand>+</strand>
        <context>TGAGCTCCCT[A/T]TTTTTTGGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAGGTAGGTTTCTATTAGAGAAAATACGGTACTTGAAATTTGAGCTCCCT</left_flank>
        <right_flank>TTTTTTGGTTCCTATTGGAGTTATCAAGAATTAGTCACATTAAAAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGATTTGATCATAATTCTTCCTGATCTAATGCCAAAAAATCTCAGAAACATAAATAACTCAAGGAAAGTTCATGGAAAAAACCTTCGAAAATTGCATGCTGTGTAAAAGATAAGAAACCGTTGGTTACAAGAATTCTAGTTGTTTAGGAAGTGAATTATCAAATAGACGTCAATTTCTGTGACGCAAAACTCTCTTCAGATTTGTAACCATACCGTATTTTCTCTAATTGAAGCGCATTGGCTTCTAATTTTCAACCTAAAAAAATTACTAAGAACTGAAATTATCAGAAACATTTCTAAAAAGAAAGGGAATGTTTGTAATAACCGAACAGACGAACTACATTGTTTGAACTGGACTCACTGAACCGCACAAACTTCTTTTAGAAATCGCGCTTTCATGATTTTAAGGCCGTCAGAGGGTAGGATTCTTCAGGCGAGCTTCAAACAGAGGTAGGTTTCTATTAGAGAAAATACGGTACTTGAAATTTGAGCTCCCTATTTTTTGGTTCCTATTGGAGTTATCAAGAATTAGTCACATTAAAAAAAAACTCCTGGCATATAACAATTATTTTGCCTATTTATGGTTTTTAGAAACCTCATTTAGGAATCGTGGTTATTCCAGTTTATGTAAAAAAAGATGTACTTAGATTATAATATGTTGCTCTCGTTTTTTAAAGAACTATTCATTCGTTCAAATTTTCACTGAAAAGTCCAAAAAGGAATTGAAATTCTTTTTACGTTTTTTTAGTCATTTCACGTTTTTCTAGTTTAAAGGGTTACTGTAAAAGACCATTTTGCATAGTATAGGCCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCTTTCAATCACCAACAATGATCTCATTGTTCCACAATGAACCGTAGCCTTGACAACACAACCACTCTATCTATAATTACAGGGGCACATGAGT</canonical>
            <polymorphic>TCTGATTTGATCATAATTCTTCCTGATCTAATGCCAAAAAATCTCAGAAACATAAATAACTCAAGGAAAGTTCATGGAAAAAACCTTCGAAAATTGCATGCTGTGTAAAAGATAAGAAACCGTTGGTTACAAGAATTCTAGTTGTTTAGGAAGTGAATTATCAAATAGACGTCAATTTCTGTGACGCAAAACTCTCTTCAGATTTGTAACCATACCGTATTTTCTCTAATTGAAGCGCATTGGCTTCTAATTTTCAACCTAAAAAAATTACTAAGAACTGAAATTATCAGAAACATTTCTAAAAAGAAAGGGAATGTTTGTAATAACCGAACAGACGAACTACATTGTTTGAACTGGACTCACTGAACCGCACAAACTTCTTTTAGAAATCGCGCTTTCATGATTTTAAGGCCGTCAGAGGGTAGGATTCTTCAGGCGAGCTTCAAACAGAGGTAGGTTTCTATTAGAGAAAATACGGTACTTGAAATTTGAGCTCCCTWTTTTTTGGTTCCTATTGGAGTTATCAAGAATTAGTCACATTAAAAAAAAACTCCTGGCATATAACAATTATTTTGCCTATTTATGGTTTTTAGAAACCTCATTTAGGAATCGTGGTTATTCCAGTTTATGTAAAAAAAGATGTACTTAGATTATAATATGTTGCTCTCGTTTTTTAAAGAACTATTCATTCGTTCAAATTTTCACTGAAAAGTCCAAAAAGGAATTGAAATTCTTTTTACGTTTTTTTAGTCATTTCACGTTTTTCTAGTTTAAAGGGTTACTGTAAAAGACCATTTTGCATAGTATAGGCCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCTTTCAATCACCAACAATGATCTCATTGTTCCACAATGAACCGTAGCCTTGACAACACAACCACTCTATCTATAATTACAGGGGCACATGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTCTCTTCAGATTTGTAACC</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTATATGCCAGGAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>381</pcr_amplicon_size>
		<canonical_amplicon>AAAACTCTCTTCAGATTTGTAACCATACCGTATTTTCTCTAATTGAAGCGCATTGGCTTCTAATTTTCAACCTAAAAAAATTACTAAGAACTGAAATTATCAGAAACATTTCTAAAAAGAAAGGGAATGTTTGTAATAACCGAACAGACGAACTACATTGTTTGAACTGGACTCACTGAACCGCACAAACTTCTTTTAGAAATCGCGCTTTCATGATTTTAAGGCCGTCAGAGGGTAGGATTCTTCAGGCGAGCTTCAAACAGAGGTAGGTTTCTATTAGAGAAAATACGGTACTTGAAATTTGAGCTCCCTATTTTTTGGTTCCTATTGGAGTTATCAAGAATTAGTCACATTAAAAAAAAACTCCTGGCATATAACAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAACTCTCTTCAGATTTGTAACCATACCGTATTTTCTCTAATTGAAGCGCATTGGCTTCTAATTTTCAACCTAAAAAAATTACTAAGAACTGAAATTATCAGAAACATTTCTAAAAAGAAAGGGAATGTTTGTAATAACCGAACAGACGAACTACATTGTTTGAACTGGACTCACTGAACCGCACAAACTTCTTTTAGAAATCGCGCTTTCATGATTTTAAGGCCGTCAGAGGGTAGGATTCTTCAGGCGAGCTTCAAACAGAGGTAGGTTTCTATTAGAGAAAATACGGTACTTGAAATTTGAGCTCCCTWTTTTTTGGTTCCTATTGGAGTTATCAAGAATTAGTCACATTAAAAAAAAACTCCTGGCATATAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39188</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>102396</contig_pos>
        <strand>+</strand>
        <context>TTTTGGTTCC[A/T]ATTGGAGWTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTAGAGAAAATACGGTACTTGAAATTTGAGCTCCCTATTTTTTGGTTCC</left_flank>
        <right_flank>ATTGGAGTTATCAAGAATTAGTCACATTAAAAAAAAACTCCTGGCATATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTCTTCCTGATCTAATGCCAAAAAATCTCAGAAACATAAATAACTCAAGGAAAGTTCATGGAAAAAACCTTCGAAAATTGCATGCTGTGTAAAAGATAAGAAACCGTTGGTTACAAGAATTCTAGTTGTTTAGGAAGTGAATTATCAAATAGACGTCAATTTCTGTGACGCAAAACTCTCTTCAGATTTGTAACCATACCGTATTTTCTCTAATTGAAGCGCATTGGCTTCTAATTTTCAACCTAAAAAAATTACTAAGAACTGAAATTATCAGAAACATTTCTAAAAAGAAAGGGAATGTTTGTAATAACCGAACAGACGAACTACATTGTTTGAACTGGACTCACTGAACCGCACAAACTTCTTTTAGAAATCGCGCTTTCATGATTTTAAGGCCGTCAGAGGGTAGGATTCTTCAGGCGAGCTTCAAACAGAGGTAGGTTTCTATTAGAGAAAATACGGTACTTGAAATTTGAGCTCCCTATTTTTTGGTTCCTATTGGAGTTATCAAGAATTAGTCACATTAAAAAAAAACTCCTGGCATATAACAATTATTTTGCCTATTTATGGTTTTTAGAAACCTCATTTAGGAATCGTGGTTATTCCAGTTTATGTAAAAAAAGATGTACTTAGATTATAATATGTTGCTCTCGTTTTTTAAAGAACTATTCATTCGTTCAAATTTTCACTGAAAAGTCCAAAAAGGAATTGAAATTCTTTTTACGTTTTTTTAGTCATTTCACGTTTTTCTAGTTTAAAGGGTTACTGTAAAAGACCATTTTGCATAGTATAGGCCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCTTTCAATCACCAACAATGATCTCATTGTTCCACAATGAACCGTAGCCTTGACAACACAACCACTCTATCTATAATTACAGGGGCACATGAGTAGTGAGAGCGTAT</canonical>
            <polymorphic>TAATTCTTCCTGATCTAATGCCAAAAAATCTCAGAAACATAAATAACTCAAGGAAAGTTCATGGAAAAAACCTTCGAAAATTGCATGCTGTGTAAAAGATAAGAAACCGTTGGTTACAAGAATTCTAGTTGTTTAGGAAGTGAATTATCAAATAGACGTCAATTTCTGTGACGCAAAACTCTCTTCAGATTTGTAACCATACCGTATTTTCTCTAATTGAAGCGCATTGGCTTCTAATTTTCAACCTAAAAAAATTACTAAGAACTGAAATTATCAGAAACATTTCTAAAAAGAAAGGGAATGTTTGTAATAACCGAACAGACGAACTACATTGTTTGAACTGGACTCACTGAACCGCACAAACTTCTTTTAGAAATCGCGCTTTCATGATTTTAAGGCCGTCAGAGGGTAGGATTCTTCAGGCGAGCTTCAAACAGAGGTAGGTTTCTATTAGAGAAAATACGGTACTTGAAATTTGAGCTCCCTATTTTTTGGTTCCWATTGGAGTTATCAAGAATTAGTCACATTAAAAAAAAACTCCTGGCATATAACAATTATTTTGCCTATTTATGGTTTTTAGAAACCTCATTTAGGAATCGTGGTTATTCCAGTTTATGTAAAAAAAGATGTACTTAGATTATAATATGTTGCTCTCGTTTTTTAAAGAACTATTCATTCGTTCAAATTTTCACTGAAAAGTCCAAAAAGGAATTGAAATTCTTTTTACGTTTTTTTAGTCATTTCACGTTTTTCTAGTTTAAAGGGTTACTGTAAAAGACCATTTTGCATAGTATAGGCCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCTTTCAATCACCAACAATGATCTCATTGTTCCACAATGAACCGTAGCCTTGACAACACAACCACTCTATCTATAATTACAGGGGCACATGAGTAGTGAGAGCGTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTCTCTTCAGATTTGTAACC</pcr_primer_p1>
		<pcr_primer_p2>ATTGTTATATGCCAGGAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>381</pcr_amplicon_size>
		<canonical_amplicon>AAAACTCTCTTCAGATTTGTAACCATACCGTATTTTCTCTAATTGAAGCGCATTGGCTTCTAATTTTCAACCTAAAAAAATTACTAAGAACTGAAATTATCAGAAACATTTCTAAAAAGAAAGGGAATGTTTGTAATAACCGAACAGACGAACTACATTGTTTGAACTGGACTCACTGAACCGCACAAACTTCTTTTAGAAATCGCGCTTTCATGATTTTAAGGCCGTCAGAGGGTAGGATTCTTCAGGCGAGCTTCAAACAGAGGTAGGTTTCTATTAGAGAAAATACGGTACTTGAAATTTGAGCTCCCTATTTTTTGGTTCCTATTGGAGTTATCAAGAATTAGTCACATTAAAAAAAAACTCCTGGCATATAACAAT</canonical_amplicon>
		<polymorphic_amplicon>AAAACTCTCTTCAGATTTGTAACCATACCGTATTTTCTCTAATTGAAGCGCATTGGCTTCTAATTTTCAACCTAAAAAAATTACTAAGAACTGAAATTATCAGAAACATTTCTAAAAAGAAAGGGAATGTTTGTAATAACCGAACAGACGAACTACATTGTTTGAACTGGACTCACTGAACCGCACAAACTTCTTTTAGAAATCGCGCTTTCATGATTTTAAGGCCGTCAGAGGGTAGGATTCTTCAGGCGAGCTTCAAACAGAGGTAGGTTTCTATTAGAGAAAATACGGTACTTGAAATTTGAGCTCCCTATTTTTTGGTTCCWATTGGAGTTATCAAGAATTAGTCACATTAAAAAAAAACTCCTGGCATATAACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39189</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>102404</contig_pos>
        <strand>+</strand>
        <context>CCWATTGGAG[A/T]TATCAAGAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATACGGTACTTGAAATTTGAGCTCCCTATTTTTTGGTTCCTATTGGAG</left_flank>
        <right_flank>TATCAAGAATTAGTCACATTAAAAAAAAACTCCTGGCATATAACAATTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTGATCTAATGCCAAAAAATCTCAGAAACATAAATAACTCAAGGAAAGTTCATGGAAAAAACCTTCGAAAATTGCATGCTGTGTAAAAGATAAGAAACCGTTGGTTACAAGAATTCTAGTTGTTTAGGAAGTGAATTATCAAATAGACGTCAATTTCTGTGACGCAAAACTCTCTTCAGATTTGTAACCATACCGTATTTTCTCTAATTGAAGCGCATTGGCTTCTAATTTTCAACCTAAAAAAATTACTAAGAACTGAAATTATCAGAAACATTTCTAAAAAGAAAGGGAATGTTTGTAATAACCGAACAGACGAACTACATTGTTTGAACTGGACTCACTGAACCGCACAAACTTCTTTTAGAAATCGCGCTTTCATGATTTTAAGGCCGTCAGAGGGTAGGATTCTTCAGGCGAGCTTCAAACAGAGGTAGGTTTCTATTAGAGAAAATACGGTACTTGAAATTTGAGCTCCCTATTTTTTGGTTCCTATTGGAGTTATCAAGAATTAGTCACATTAAAAAAAAACTCCTGGCATATAACAATTATTTTGCCTATTTATGGTTTTTAGAAACCTCATTTAGGAATCGTGGTTATTCCAGTTTATGTAAAAAAAGATGTACTTAGATTATAATATGTTGCTCTCGTTTTTTAAAGAACTATTCATTCGTTCAAATTTTCACTGAAAAGTCCAAAAAGGAATTGAAATTCTTTTTACGTTTTTTTAGTCATTTCACGTTTTTCTAGTTTAAAGGGTTACTGTAAAAGACCATTTTGCATAGTATAGGCCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCTTTCAATCACCAACAATGATCTCATTGTTCCACAATGAACCGTAGCCTTGACAACACAACCACTCTATCTATAATTACAGGGGCACATGAGTAGTGAGAGCGTATGAACTTGT</canonical>
            <polymorphic>CCTGATCTAATGCCAAAAAATCTCAGAAACATAAATAACTCAAGGAAAGTTCATGGAAAAAACCTTCGAAAATTGCATGCTGTGTAAAAGATAAGAAACCGTTGGTTACAAGAATTCTAGTTGTTTAGGAAGTGAATTATCAAATAGACGTCAATTTCTGTGACGCAAAACTCTCTTCAGATTTGTAACCATACCGTATTTTCTCTAATTGAAGCGCATTGGCTTCTAATTTTCAACCTAAAAAAATTACTAAGAACTGAAATTATCAGAAACATTTCTAAAAAGAAAGGGAATGTTTGTAATAACCGAACAGACGAACTACATTGTTTGAACTGGACTCACTGAACCGCACAAACTTCTTTTAGAAATCGCGCTTTCATGATTTTAAGGCCGTCAGAGGGTAGGATTCTTCAGGCGAGCTTCAAACAGAGGTAGGTTTCTATTAGAGAAAATACGGTACTTGAAATTTGAGCTCCCTATTTTTTGGTTCCTATTGGAGWTATCAAGAATTAGTCACATTAAAAAAAAACTCCTGGCATATAACAATTATTTTGCCTATTTATGGTTTTTAGAAACCTCATTTAGGAATCGTGGTTATTCCAGTTTATGTAAAAAAAGATGTACTTAGATTATAATATGTTGCTCTCGTTTTTTAAAGAACTATTCATTCGTTCAAATTTTCACTGAAAAGTCCAAAAAGGAATTGAAATTCTTTTTACGTTTTTTTAGTCATTTCACGTTTTTCTAGTTTAAAGGGTTACTGTAAAAGACCATTTTGCATAGTATAGGCCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCTTTCAATCACCAACAATGATCTCATTGTTCCACAATGAACCGTAGCCTTGACAACACAACCACTCTATCTATAATTACAGGGGCACATGAGTAGTGAGAGCGTATGAACTTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAACTCTCTTCAGATTTGTAACC</pcr_primer_p1>
		<pcr_primer_p2>ACCATAAATAGGCAAAATAATTG</pcr_primer_p2>
		<pcr_amplicon_size>400</pcr_amplicon_size>
		<canonical_amplicon>AAAACTCTCTTCAGATTTGTAACCATACCGTATTTTCTCTAATTGAAGCGCATTGGCTTCTAATTTTCAACCTAAAAAAATTACTAAGAACTGAAATTATCAGAAACATTTCTAAAAAGAAAGGGAATGTTTGTAATAACCGAACAGACGAACTACATTGTTTGAACTGGACTCACTGAACCGCACAAACTTCTTTTAGAAATCGCGCTTTCATGATTTTAAGGCCGTCAGAGGGTAGGATTCTTCAGGCGAGCTTCAAACAGAGGTAGGTTTCTATTAGAGAAAATACGGTACTTGAAATTTGAGCTCCCTATTTTTTGGTTCCTATTGGAGTTATCAAGAATTAGTCACATTAAAAAAAAACTCCTGGCATATAACAATTATTTTGCCTATTTATGGT</canonical_amplicon>
		<polymorphic_amplicon>AAAACTCTCTTCAGATTTGTAACCATACCGTATTTTCTCTAATTGAAGCGCATTGGCTTCTAATTTTCAACCTAAAAAAATTACTAAGAACTGAAATTATCAGAAACATTTCTAAAAAGAAAGGGAATGTTTGTAATAACCGAACAGACGAACTACATTGTTTGAACTGGACTCACTGAACCGCACAAACTTCTTTTAGAAATCGCGCTTTCATGATTTTAAGGCCGTCAGAGGGTAGGATTCTTCAGGCGAGCTTCAAACAGAGGTAGGTTTCTATTAGAGAAAATACGGTACTTGAAATTTGAGCTCCCTATTTTTTGGTTCCTATTGGAGWTATCAAGAATTAGTCACATTAAAAAAAAACTCCTGGCATATAACAATTATTTTGCCTATTTATGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39190</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>102425</contig_pos>
        <strand>+</strand>
        <context>TAGTCACATT[A/T]AAAAAAAACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGCTCCCTATTTTTTGGTTCCTATTGGAGTTATCAAGAATTAGTCACATT</left_flank>
        <right_flank>AAAAAAAACTCCTGGCATATAACAATTATTTTGCCTATTTATGGTTTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCAGAAACATAAATAACTCAAGGAAAGTTCATGGAAAAAACCTTCGAAAATTGCATGCTGTGTAAAAGATAAGAAACCGTTGGTTACAAGAATTCTAGTTGTTTAGGAAGTGAATTATCAAATAGACGTCAATTTCTGTGACGCAAAACTCTCTTCAGATTTGTAACCATACCGTATTTTCTCTAATTGAAGCGCATTGGCTTCTAATTTTCAACCTAAAAAAATTACTAAGAACTGAAATTATCAGAAACATTTCTAAAAAGAAAGGGAATGTTTGTAATAACCGAACAGACGAACTACATTGTTTGAACTGGACTCACTGAACCGCACAAACTTCTTTTAGAAATCGCGCTTTCATGATTTTAAGGCCGTCAGAGGGTAGGATTCTTCAGGCGAGCTTCAAACAGAGGTAGGTTTCTATTAGAGAAAATACGGTACTTGAAATTTGAGCTCCCTATTTTTTGGTTCCTATTGGAGTTATCAAGAATTAGTCACATTAAAAAAAAACTCCTGGCATATAACAATTATTTTGCCTATTTATGGTTTTTAGAAACCTCATTTAGGAATCGTGGTTATTCCAGTTTATGTAAAAAAAGATGTACTTAGATTATAATATGTTGCTCTCGTTTTTTAAAGAACTATTCATTCGTTCAAATTTTCACTGAAAAGTCCAAAAAGGAATTGAAATTCTTTTTACGTTTTTTTAGTCATTTCACGTTTTTCTAGTTTAAAGGGTTACTGTAAAAGACCATTTTGCATAGTATAGGCCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCTTTCAATCACCAACAATGATCTCATTGTTCCACAATGAACCGTAGCCTTGACAACACAACCACTCTATCTATAATTACAGGGGCACATGAGTAGTGAGAGCGTATGAACTTGTTTACAATAAAGTATTCTACAT</canonical>
            <polymorphic>CTCAGAAACATAAATAACTCAAGGAAAGTTCATGGAAAAAACCTTCGAAAATTGCATGCTGTGTAAAAGATAAGAAACCGTTGGTTACAAGAATTCTAGTTGTTTAGGAAGTGAATTATCAAATAGACGTCAATTTCTGTGACGCAAAACTCTCTTCAGATTTGTAACCATACCGTATTTTCTCTAATTGAAGCGCATTGGCTTCTAATTTTCAACCTAAAAAAATTACTAAGAACTGAAATTATCAGAAACATTTCTAAAAAGAAAGGGAATGTTTGTAATAACCGAACAGACGAACTACATTGTTTGAACTGGACTCACTGAACCGCACAAACTTCTTTTAGAAATCGCGCTTTCATGATTTTAAGGCCGTCAGAGGGTAGGATTCTTCAGGCGAGCTTCAAACAGAGGTAGGTTTCTATTAGAGAAAATACGGTACTTGAAATTTGAGCTCCCTATTTTTTGGTTCCTATTGGAGTTATCAAGAATTAGTCACATTWAAAAAAAACTCCTGGCATATAACAATTATTTTGCCTATTTATGGTTTTTAGAAACCTCATTTAGGAATCGTGGTTATTCCAGTTTATGTAAAAAAAGATGTACTTAGATTATAATATGTTGCTCTCGTTTTTTAAAGAACTATTCATTCGTTCAAATTTTCACTGAAAAGTCCAAAAAGGAATTGAAATTCTTTTTACGTTTTTTTAGTCATTTCACGTTTTTCTAGTTTAAAGGGTTACTGTAAAAGACCATTTTGCATAGTATAGGCCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCTTTCAATCACCAACAATGATCTCATTGTTCCACAATGAACCGTAGCCTTGACAACACAACCACTCTATCTATAATTACAGGGGCACATGAGTAGTGAGAGCGTATGAACTTGTTTACAATAAAGTATTCTACAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>364 271 134 134 97</canonical_bands>
                <polymorphic_bands>364 271 268 97</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAACTCTCTTCAGATTTGTAAC</pcr_primer_p1>
		<pcr_primer_p2>CGATTCCTAAATGAGGTTTCTA</pcr_primer_p2>
		<pcr_amplicon_size>426</pcr_amplicon_size>
		<canonical_amplicon>CAAAACTCTCTTCAGATTTGTAACCATACCGTATTTTCTCTAATTGAAGCGCATTGGCTTCTAATTTTCAACCTAAAAAAATTACTAAGAACTGAAATTATCAGAAACATTTCTAAAAAGAAAGGGAATGTTTGTAATAACCGAACAGACGAACTACATTGTTTGAACTGGACTCACTGAACCGCACAAACTTCTTTTAGAAATCGCGCTTTCATGATTTTAAGGCCGTCAGAGGGTAGGATTCTTCAGGCGAGCTTCAAACAGAGGTAGGTTTCTATTAGAGAAAATACGGTACTTGAAATTTGAGCTCCCTATTTTTTGGTTCCTATTGGAGTTATCAAGAATTAGTCACATTAAAAAAAAACTCCTGGCATATAACAATTATTTTGCCTATTTATGGTTTTTAGAAACCTCATTTAGGAATCG</canonical_amplicon>
		<polymorphic_amplicon>CAAAACTCTCTTCAGATTTGTAACCATACCGTATTTTCTCTAATTGAAGCGCATTGGCTTCTAATTTTCAACCTAAAAAAATTACTAAGAACTGAAATTATCAGAAACATTTCTAAAAAGAAAGGGAATGTTTGTAATAACCGAACAGACGAACTACATTGTTTGAACTGGACTCACTGAACCGCACAAACTTCTTTTAGAAATCGCGCTTTCATGATTTTAAGGCCGTCAGAGGGTAGGATTCTTCAGGCGAGCTTCAAACAGAGGTAGGTTTCTATTAGAGAAAATACGGTACTTGAAATTTGAGCTCCCTATTTTTTGGTTCCTATTGGAGTTATCAAGAATTAGTCACATTWAAAAAAAACTCCTGGCATATAACAATTATTTTGCCTATTTATGGTTTTTAGAAACCTCATTTAGGAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39191</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>102509</contig_pos>
        <strand>+</strand>
        <context>TTATTCCAGT[C/T]TATGTAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTATTTATGGTTTTTAGAAACCTCATTTAGGAATCGTGGTTATTCCAGT</left_flank>
        <right_flank>TATGTAAAAAAAGATGTACTTAGATTATAATATGTTGCTCTCGTTTTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTACAAGAATTCTAGTTGTTTAGGAAGTGAATTATCAAATAGACGTCAATTTCTGTGACGCAAAACTCTCTTCAGATTTGTAACCATACCGTATTTTCTCTAATTGAAGCGCATTGGCTTCTAATTTTCAACCTAAAAAAATTACTAAGAACTGAAATTATCAGAAACATTTCTAAAAAGAAAGGGAATGTTTGTAATAACCGAACAGACGAACTACATTGTTTGAACTGGACTCACTGAACCGCACAAACTTCTTTTAGAAATCGCGCTTTCATGATTTTAAGGCCGTCAGAGGGTAGGATTCTTCAGGCGAGCTTCAAACAGAGGTAGGTTTCTATTAGAGAAAATACGGTACTTGAAATTTGAGCTCCCTATTTTTTGGTTCCTATTGGAGTTATCAAGAATTAGTCACATTAAAAAAAAACTCCTGGCATATAACAATTATTTTGCCTATTTATGGTTTTTAGAAACCTCATTTAGGAATCGTGGTTATTCCAGTTTATGTAAAAAAAGATGTACTTAGATTATAATATGTTGCTCTCGTTTTTTAAAGAACTATTCATTCGTTCAAATTTTCACTGAAAAGTCCAAAAAGGAATTGAAATTCTTTTTACGTTTTTTTAGTCATTTCACGTTTTTCTAGTTTAAAGGGTTACTGTAAAAGACCATTTTGCATAGTATAGGCCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCTTTCAATCACCAACAATGATCTCATTGTTCCACAATGAACCGTAGCCTTGACAACACAACCACTCTATCTATAATTACAGGGGCACATGAGTAGTGAGAGCGTATGAACTTGTTTACAATAAAGTATTCTACATTTTCGAATGTCTTGTGATTATCACATTTTCGAGAAACTAGATTATAGTAGTTTCTTACTGTAGATTTACGTAGGCGGATCATAA</canonical>
            <polymorphic>TTACAAGAATTCTAGTTGTTTAGGAAGTGAATTATCAAATAGACGTCAATTTCTGTGACGCAAAACTCTCTTCAGATTTGTAACCATACCGTATTTTCTCTAATTGAAGCGCATTGGCTTCTAATTTTCAACCTAAAAAAATTACTAAGAACTGAAATTATCAGAAACATTTCTAAAAAGAAAGGGAATGTTTGTAATAACCGAACAGACGAACTACATTGTTTGAACTGGACTCACTGAACCGCACAAACTTCTTTTAGAAATCGCGCTTTCATGATTTTAAGGCCGTCAGAGGGTAGGATTCTTCAGGCGAGCTTCAAACAGAGGTAGGTTTCTATTAGAGAAAATACGGTACTTGAAATTTGAGCTCCCTATTTTTTGGTTCCTATTGGAGTTATCAAGAATTAGTCACATTAAAAAAAAACTCCTGGCATATAACAATTATTTTGCCTATTTATGGTTTTTAGAAACCTCATTTAGGAATCGTGGTTATTCCAGTYTATGTAAAAAAAGATGTACTTAGATTATAATATGTTGCTCTCGTTTTTTAAAGAACTATTCATTCGTTCAAATTTTCACTGAAAAGTCCAAAAAGGAATTGAAATTCTTTTTACGTTTTTTTAGTCATTTCACGTTTTTCTAGTTTAAAGGGTTACTGTAAAAGACCATTTTGCATAGTATAGGCCAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCTTTCAATCACCAACAATGATCTCATTGTTCCACAATGAACCGTAGCCTTGACAACACAACCACTCTATCTATAATTACAGGGGCACATGAGTAGTGAGAGCGTATGAACTTGTTTACAATAAAGTATTCTACATTTTCGAATGTCTTGTGATTATCACATTTTCGAGAAACTAGATTATAGTAGTTTCTTACTGTAGATTTACGTAGGCGGATCATAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTCCTGGCATATAACAAT</pcr_primer_p1>
		<pcr_primer_p2>TGGTCTTTTACAGTAACCCTTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTCCTGGCATATAACAATTATTTTGCCTATTTATGGTTTTTAGAAACCTCATTTAGGAATCGTGGTTATTCCAGTTTATGTAAAAAAAGATGTACTTAGATTATAATATGTTGCTCTCGTTTTTTAAAGAACTATTCATTCGTTCAAATTTTCACTGAAAAGTCCAAAAAGGAATTGAAATTCTTTTTACGTTTTTTTAGTCATTTCACGTTTTTCTAGTTTAAAGGGTTACTGTAAAAGACCA</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTCCTGGCATATAACAATTATTTTGCCTATTTATGGTTTTTAGAAACCTCATTTAGGAATCGTGGTTATTCCAGTYTATGTAAAAAAAGATGTACTTAGATTATAATATGTTGCTCTCGTTTTTTAAAGAACTATTCATTCGTTCAAATTTTCACTGAAAAGTCCAAAAAGGAATTGAAATTCTTTTTACGTTTTTTTAGTCATTTCACGTTTTTCTAGTTTAAAGGGTTACTGTAAAAGACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39192</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>117823</contig_pos>
        <strand>+</strand>
        <context>TGGGGAACTA[C/G]AAATGACTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTCGGTTTTCATTGCGGATCCAAATAATATTTTGGGCTTCTGGGGAACTA</left_flank>
        <right_flank>AAATGACTGATAAATCAAATTTGAAGTTCTTCATAGTATCTACCTGAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCAATGAAGATATAAGTTCTGCGACTCCAGAAAGTATTCTAAAGTTGTTCAAAATCTTTAAAATGAGAGCTGTGAAATTTGGAGCACATTTTCCAGAGTCGCTCATGGAGTAGATGCGACTCGGCATTGCCGTTGTCCCGTGGAAATTAATTTCTTTTTACTTTCACATGAGCAATCGGATTCCGTTTTTGTCTTATCCCATTGCTGAAAAAATTGAGTATCTCAATAAAGTTGTCCGAATTGAATTCGAATATTCTGTTTCTCAATTTCGAAAATACTCACCCCATACATAGCTTCCTCACAATGTTTCAATCTCTGTTGTGCTGACGACGAAACGTATTCTGCGGATTTCGCTACCGGGAGCAAATGAGATGGTAGATTTGAAGGCTCACTGAAATCATTTTCACTAAACCTGTCGAAAATAGTCTACTTACAATAGTGGTACAGTCTCGGTTTTCATTGCGGATCCAAATAATATTTTGGGCTTCTGGGGAACTAGAAATGACTGATAAATCAAATTTGAAGTTCTTCATAGTATCTACCTGAAATTCCTGCTCCATATATGGGTTCATTGAGGAATCGCAAGCAAATTTTTTTCTTAGCTAAACGCATCTCATCGAATTGATCGAACAAGGCTTCACGATAATTCTCATAAGACATTCCAGCCGGTCGTACAGTGATCCTAAAAATTGTGATTCGATTTTTAAAATTTATTGATTTTTTTCTTACAATTTCTTCTCCGTCTCATAACAATTTTTCAAAGCCGAGTTTTGAGTTGAAACTGGTCCAGATTGGGATTGTGAAATCTGAAAAGAAGTATGAAAAATGAGGGTTCCTTTGCCAATAACACAATATTTGATTTTTTTTAGTTTTGCACCAACTCACCTGATCCGTTGCCGGCTGGTGTTTTTCTGGATTGGAAAATGGTTTCTTTTGAACAATATTATCTTGTAAACTTCGTCGGTCCATTGTCTGCTCCATCTTATCATTTGGAAGTAT</canonical>
            <polymorphic>ATCAATGAAGATATAAGTTCTGCGACTCCAGAAAGTATTCTAAAGTTGTTCAAAATCTTTAAAATGAGAGCTGTGAAATTTGGAGCACATTTTCCAGAGTCGCTCATGGAGTAGATGCGACTCGGCATTGCCGTTGTCCCGTGGAAATTAATTTCTTTTTACTTTCACATGAGCAATCGGATTCCGTTTTTGTCTTATCCCATTGCTGAAAAAATTGAGTATCTCAATAAAGTTGTCCGAATTGAATTCGAATATTCTGTTTCTCAATTTCGAAAATACTCACCCCATACATAGCTTCCTCACAATGTTTCAATCTCTGTTGTGCTGACGACGAAACGTATTCTGCGGATTTCGCTACCGGGAGCAAATGAGATGGTAGATTTGAAGGCTCACTGAAATCATTTTCACTAAACCTGTCGAAAATAGTCTACTTACAATAGTGGTACAGTCTCGGTTTTCATTGCGGATCCAAATAATATTTTGGGCTTCTGGGGAACTASAAATGACTGATAAATCAAATTTGAAGTTCTTCATAGTATCTACCTGAAATTCCTGCTCCATATATGGGTTCATTGAGGAATCGCAAGCAAATTTTTTTCTTAGCTAAACGCATCTCATCGAATTGATCGAACAAGGCTTCACGATAATTCTCATAAGACATTCCAGCCGGTCGTACAGTGATCCTAAAAATTGTGATTCGATTTTTAAAATTTATTGATTTTTTTCTTACAATTTCTTCTCCGTCTCATAACAATTTTTCAAAGCCGAGTTTTGAGTTGAAACTGGTCCAGATTGGGATTGTGAAATCTGAAAAGAAGTATGAAAAATGAGGGTTCCTTTGCCAATAACACAATATTTGATTTTTTTTAGTTTTGCACCAACTCACCTGATCCGTTGCCGGCTGGTGTTTTTCTGGATTGGAAAATGGTTTCTTTTGAACAATATTATCTTGTAAACTTCGTCGGTCCATTGTCTGCTCCATCTTATCATTTGGAAGTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATGAGATGGTAGATTTGAAG</pcr_primer_p1>
		<pcr_primer_p2>GAGATGCGTTTAGCTAAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAAATGAGATGGTAGATTTGAAGGCTCACTGAAATCATTTTCACTAAACCTGTCGAAAATAGTCTACTTACAATAGTGGTACAGTCTCGGTTTTCATTGCGGATCCAAATAATATTTTGGGCTTCTGGGGAACTAGAAATGACTGATAAATCAAATTTGAAGTTCTTCATAGTATCTACCTGAAATTCCTGCTCCATATATGGGTTCATTGAGGAATCGCAAGCAAATTTTTTTCTTAGCTAAACGCATCTC</canonical_amplicon>
		<polymorphic_amplicon>CAAATGAGATGGTAGATTTGAAGGCTCACTGAAATCATTTTCACTAAACCTGTCGAAAATAGTCTACTTACAATAGTGGTACAGTCTCGGTTTTCATTGCGGATCCAAATAATATTTTGGGCTTCTGGGGAACTASAAATGACTGATAAATCAAATTTGAAGTTCTTCATAGTATCTACCTGAAATTCCTGCTCCATATATGGGTTCATTGAGGAATCGCAAGCAAATTTTTTTCTTAGCTAAACGCATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39193</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>117859</contig_pos>
        <strand>+</strand>
        <context>RTTCTTCATA[C/G]TATCTACCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTTCTGGGGAACTAGAAATGACTGATAAATCAAATTTGAAGTTCTTCATA</left_flank>
        <right_flank>TATCTACCTGAAATTCCTGCTCCATATATGGGTTCATTGAGGAATCGCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTAAAGTTGTTCAAAATCTTTAAAATGAGAGCTGTGAAATTTGGAGCACATTTTCCAGAGTCGCTCATGGAGTAGATGCGACTCGGCATTGCCGTTGTCCCGTGGAAATTAATTTCTTTTTACTTTCACATGAGCAATCGGATTCCGTTTTTGTCTTATCCCATTGCTGAAAAAATTGAGTATCTCAATAAAGTTGTCCGAATTGAATTCGAATATTCTGTTTCTCAATTTCGAAAATACTCACCCCATACATAGCTTCCTCACAATGTTTCAATCTCTGTTGTGCTGACGACGAAACGTATTCTGCGGATTTCGCTACCGGGAGCAAATGAGATGGTAGATTTGAAGGCTCACTGAAATCATTTTCACTAAACCTGTCGAAAATAGTCTACTTACAATAGTGGTACAGTCTCGGTTTTCATTGCGGATCCAAATAATATTTTGGGCTTCTGGGGAACTAGAAATGACTGATAAATCAAATTTGAAGTTCTTCATAGTATCTACCTGAAATTCCTGCTCCATATATGGGTTCATTGAGGAATCGCAAGCAAATTTTTTTCTTAGCTAAACGCATCTCATCGAATTGATCGAACAAGGCTTCACGATAATTCTCATAAGACATTCCAGCCGGTCGTACAGTGATCCTAAAAATTGTGATTCGATTTTTAAAATTTATTGATTTTTTTCTTACAATTTCTTCTCCGTCTCATAACAATTTTTCAAAGCCGAGTTTTGAGTTGAAACTGGTCCAGATTGGGATTGTGAAATCTGAAAAGAAGTATGAAAAATGAGGGTTCCTTTGCCAATAACACAATATTTGATTTTTTTTAGTTTTGCACCAACTCACCTGATCCGTTGCCGGCTGGTGTTTTTCTGGATTGGAAAATGGTTTCTTTTGAACAATATTATCTTGTAAACTTCGTCGGTCCATTGTCTGCTCCATCTTATCATTTGGAAGTATACCAATATTTCCGGAAGACACTCCGACGGGATTGCT</canonical>
            <polymorphic>ATTCTAAAGTTGTTCAAAATCTTTAAAATGAGAGCTGTGAAATTTGGAGCACATTTTCCAGAGTCGCTCATGGAGTAGATGCGACTCGGCATTGCCGTTGTCCCGTGGAAATTAATTTCTTTTTACTTTCACATGAGCAATCGGATTCCGTTTTTGTCTTATCCCATTGCTGAAAAAATTGAGTATCTCAATAAAGTTGTCCGAATTGAATTCGAATATTCTGTTTCTCAATTTCGAAAATACTCACCCCATACATAGCTTCCTCACAATGTTTCAATCTCTGTTGTGCTGACGACGAAACGTATTCTGCGGATTTCGCTACCGGGAGCAAATGAGATGGTAGATTTGAAGGCTCACTGAAATCATTTTCACTAAACCTGTCGAAAATAGTCTACTTACAATAGTGGTACAGTCTCGGTTTTCATTGCGGATCCAAATAATATTTTGGGCTTCTGGGGAACTAGAAATGACTGATAAATCAAATTTGAAGTTCTTCATASTATCTACCTGAAATTCCTGCTCCATATATGGGTTCATTGAGGAATCGCAAGCAAATTTTTTTCTTAGCTAAACGCATCTCATCGAATTGATCGAACAAGGCTTCACGATAATTCTCATAAGACATTCCAGCCGGTCGTACAGTGATCCTAAAAATTGTGATTCGATTTTTAAAATTTATTGATTTTTTTCTTACAATTTCTTCTCCGTCTCATAACAATTTTTCAAAGCCGAGTTTTGAGTTGAAACTGGTCCAGATTGGGATTGTGAAATCTGAAAAGAAGTATGAAAAATGAGGGTTCCTTTGCCAATAACACAATATTTGATTTTTTTTAGTTTTGCACCAACTCACCTGATCCGTTGCCGGCTGGTGTTTTTCTGGATTGGAAAATGGTTTCTTTTGAACAATATTATCTTGTAAACTTCGTCGGTCCATTGTCTGCTCCATCTTATCATTTGGAAGTATACCAATATTTCCGGAAGACACTCCGACGGGATTGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAATGAGATGGTAGATTTGAAG</pcr_primer_p1>
		<pcr_primer_p2>GAGATGCGTTTAGCTAAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAAATGAGATGGTAGATTTGAAGGCTCACTGAAATCATTTTCACTAAACCTGTCGAAAATAGTCTACTTACAATAGTGGTACAGTCTCGGTTTTCATTGCGGATCCAAATAATATTTTGGGCTTCTGGGGAACTAGAAATGACTGATAAATCAAATTTGAAGTTCTTCATAGTATCTACCTGAAATTCCTGCTCCATATATGGGTTCATTGAGGAATCGCAAGCAAATTTTTTTCTTAGCTAAACGCATCTC</canonical_amplicon>
		<polymorphic_amplicon>CAAATGAGATGGTAGATTTGAAGGCTCACTGAAATCATTTTCACTAAACCTGTCGAAAATAGTCTACTTACAATAGTGGTACAGTCTCGGTTTTCATTGCGGATCCAAATAATATTTTGGGCTTCTGGGGAACTAGAAATGACTGATAAATCAAATTTGAAGTTCTTCATASTATCTACCTGAAATTCCTGCTCCATATATGGGTTCATTGAGGAATCGCAAGCAAATTTTTTTCTTAGCTAAACGCATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39194</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>119018</contig_pos>
        <strand></strand>
        <context>AACTGAATTC[G/A]ATTCACCAGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTGTACTTGCACCTGGAGGACCAGTGCAGCTTCCTCCAAAAACTGAATTC</left_flank>
        <right_flank>ATTCACCAGACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGAT</right_flank>
        <qual_score>33</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGAATCCTGACTTGTTGAGTACCCAATGATCCATGATGAGCTTGATTGTTCTGAAAATGTATTTTTAACAGCATTTGTCTTCTTGTTTTTTGTCTAAACTAGACTCTACCCGCCCCATCAAAAATTAAACATCTCAATTTTGAATAACAAAAAATCAGAATTTAGATTTGAACAACGCTATTCTGATCAACAATCTCCAGAGTGTCAATTTTTGTTTGGGTACAGTTAATTGGGCTTTAGTGCATTTCACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTTCAGATTTTCATGGGCAGTGGCGTCCCTTTTCTTTCTTTTGGAATTTTTCTACGCCCATACATACTTTTCAGGATCAAAACTTCGAAACAAAAAAATAAACTCACAAATAAGGAAGAAGGAATTGGAAAACTTGAAGAATTCTGCATCAGTGGTGTACTTGCACCTGGAGGACCAGTGCAGCTTCCTCCAAAAACTGAATTCGATTCACCAGACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAAATCGGAAGAAAATGAAGGTTGGTGACCATTTGAACCTAATTTATGTTGCCTTGGATTGGTTGTTCTGCCGTTATTTGCCCTTCGGAGCAGCTTTAATTCATATTTATAATCGTCTTTTTGTCTGCCCTGAAAAATATGAGTTGAAAAAAACTAAGAATATGTACAGTTTCTTAACAACCATGGAAGAAAATCAGAAATTCGAAACACTCTTTCACATGTCTTTGAAATCTACTTAAGATAAATTCGCAGGATTCATGTACTGGAAATAGAGAAATCGACCGAACTCACCAGTGTTCGATTGTGAACTTCGCGACAAGTGCATTTAGTCTCGCGGCACATTTTCCATTTTTTGATGTTTGCCTGTTTTGAACCACACTTCTTCATTTTTGGGTCCGGCCTTTGGTATTGTGGAGTGCCGTCACCACCGTTTCCA</canonical>
            <polymorphic>TGGAATCCTGACTTGTTGAGTACCCAATGATCCATGATGAGCTTGATTGTTCTGAAAATGTATTTTTAACAGCATTTGTCTTCTTGTTTTTTGTCTAAACTAGACTCTACCCGCCCCATCAAAAATTAAACATCTCAATTTTGAATAACAAAAAATCAGAATTTAGATTTGAACAACGCTATTCTGATCAACAATCTCCAGAGTGTCAATTTTTGTTTGGGTACAGTTAATTGGGCTTTAGTGCATTTCACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTTCAGATTTTCATGGGCAGTGGCGTCCCTTTTCTTTCTTTTGGAATTTTTCTACGCCCATACATACTTTTCAGGATCAAAACTTCGAAACAAAAAAATAAACTCACAAATAAGGAAGAAGGAATTGGAAAACTTGAAGAATTCTGCATCAGTGGTGTACTTGCACCTGGAGGACCAGTGCAGCTTCCTCCAAAAACTGAATTCRATTCACCAGACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAAATCGGAAGAAAATGAAGGTTGGTGACCATTTGAACCTAATTTATGTTGCCTTGGATTGGTTGTTCTGCCGTTATTTGCCCTTCGGAGCAGCTTTAATTCATATTTATAATCGTCTTTTTGTCTGCCCTGAAAAATATGAGTTGAAAAAAACTAAGAATATGTACAGTTTCTTAACAACCATGGAAGAAAATCAGAAATTCGAAACACTCTTTCACATGTCTTTGAAATCTACTTAAGATAAATTCGCAGGATTCATGTACTGGAAATAGAGAAATCGACCGAACTCACCAGTGTTCGATTGTGAACTTCGCGACAAGTGCATTTAGTCTCGCGGCACATTTTCCATTTTTTGATGTTTGCCTGTTTTGAACCACACTTCTTCATTTTTGGGTCCGGCCTTTGGTATTGTGGAGTGCCGTCACCACCGTTTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>381 268 137 118 76 20</canonical_bands>
                <polymorphic_bands>386 381 137 76 20</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>397 259 183 100 58 3</canonical_bands>
                <polymorphic_bands>455 259 183 100 3</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>497 317 183 3</canonical_bands>
                <polymorphic_bands>814 183 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTTCTTTCTTTTGGAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>ACGACTCAAGGTGGATCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>CTTTTCTTTCTTTTGGAATTTTTCTACGCCCATACATACTTTTCAGGATCAAAACTTCGAAACAAAAAAATAAACTCACAAATAAGGAAGAAGGAATTGGAAAACTTGAAGAATTCTGCATCAGTGGTGTACTTGCACCTGGAGGACCAGTGCAGCTTCCTCCAAAAACTGAATTCGATTCACCAGACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTCTTTCTTTTGGAATTTTTCTACGCCCATACATACTTTTCAGGATCAAAACTTCGAAACAAAAAAATAAACTCACAAATAAGGAAGAAGGAATTGGAAAACTTGAAGAATTCTGCATCAGTGGTGTACTTGCACCTGGAGGACCAGTGCAGCTTCCTCCAAAAACTGAATTCRATTCACCAGACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39195</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>119051</contig_pos>
        <strand></strand>
        <context>TTGCTCATGG[G/T]GTTGGCGGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCCAAAAACTGAATTCGATTCACCAGACTTTTCAATTTCTTGCTCATGG</left_flank>
        <right_flank>GTTGGCGGGAATTAGATCCACCTTGAGTCGTCAAATCGGAAGAAAATGAA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGATGAGCTTGATTGTTCTGAAAATGTATTTTTAACAGCATTTGTCTTCTTGTTTTTTGTCTAAACTAGACTCTACCCGCCCCATCAAAAATTAAACATCTCAATTTTGAATAACAAAAAATCAGAATTTAGATTTGAACAACGCTATTCTGATCAACAATCTCCAGAGTGTCAATTTTTGTTTGGGTACAGTTAATTGGGCTTTAGTGCATTTCACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTTCAGATTTTCATGGGCAGTGGCGTCCCTTTTCTTTCTTTTGGAATTTTTCTACGCCCATACATACTTTTCAGGATCAAAACTTCGAAACAAAAAAATAAACTCACAAATAAGGAAGAAGGAATTGGAAAACTTGAAGAATTCTGCATCAGTGGTGTACTTGCACCTGGAGGACCAGTGCAGCTTCCTCCAAAAACTGAATTCGATTCACCAGACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAAATCGGAAGAAAATGAAGGTTGGTGACCATTTGAACCTAATTTATGTTGCCTTGGATTGGTTGTTCTGCCGTTATTTGCCCTTCGGAGCAGCTTTAATTCATATTTATAATCGTCTTTTTGTCTGCCCTGAAAAATATGAGTTGAAAAAAACTAAGAATATGTACAGTTTCTTAACAACCATGGAAGAAAATCAGAAATTCGAAACACTCTTTCACATGTCTTTGAAATCTACTTAAGATAAATTCGCAGGATTCATGTACTGGAAATAGAGAAATCGACCGAACTCACCAGTGTTCGATTGTGAACTTCGCGACAAGTGCATTTAGTCTCGCGGCACATTTTCCATTTTTTGATGTTTGCCTGTTTTGAACCACACTTCTTCATTTTTGGGTCCGGCCTTTGGTATTGTGGAGTGCCGTCACCACCGTTTCCAGGCTGATTAAATATGCTCGAATAATGTTCTGGA</canonical>
            <polymorphic>ATGATGAGCTTGATTGTTCTGAAAATGTATTTTTAACAGCATTTGTCTTCTTGTTTTTTGTCTAAACTAGACTCTACCCGCCCCATCAAAAATTAAACATCTCAATTTTGAATAACAAAAAATCAGAATTTAGATTTGAACAACGCTATTCTGATCAACAATCTCCAGAGTGTCAATTTTTGTTTGGGTACAGTTAATTGGGCTTTAGTGCATTTCACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTTCAGATTTTCATGGGCAGTGGCGTCCCTTTTCTTTCTTTTGGAATTTTTCTACGCCCATACATACTTTTCAGGATCAAAACTTCGAAACAAAAAAATAAACTCACAAATAAGGAAGAAGGAATTGGAAAACTTGAAGAATTCTGCATCAGTGGTGTACTTGCACCTGGAGGACCAGTGCAGCTTCCTCCAAAAACTGAATTCGATTCACCAGACTTTTCAATTTCTTGCTCATGGKGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAAATCGGAAGAAAATGAAGGTTGGTGACCATTTGAACCTAATTTATGTTGCCTTGGATTGGTTGTTCTGCCGTTATTTGCCCTTCGGAGCAGCTTTAATTCATATTTATAATCGTCTTTTTGTCTGCCCTGAAAAATATGAGTTGAAAAAAACTAAGAATATGTACAGTTTCTTAACAACCATGGAAGAAAATCAGAAATTCGAAACACTCTTTCACATGTCTTTGAAATCTACTTAAGATAAATTCGCAGGATTCATGTACTGGAAATAGAGAAATCGACCGAACTCACCAGTGTTCGATTGTGAACTTCGCGACAAGTGCATTTAGTCTCGCGGCACATTTTCCATTTTTTGATGTTTGCCTGTTTTGAACCACACTTCTTCATTTTTGGGTCCGGCCTTTGGTATTGTGGAGTGCCGTCACCACCGTTTCCAGGCTGATTAAATATGCTCGAATAATGTTCTGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCAAAACTTCGAAACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CAATCCAAGGCAACATAAAT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>GATCAAAACTTCGAAACAAAAAAATAAACTCACAAATAAGGAAGAAGGAATTGGAAAACTTGAAGAATTCTGCATCAGTGGTGTACTTGCACCTGGAGGACCAGTGCAGCTTCCTCCAAAAACTGAATTCGATTCACCAGACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAAATCGGAAGAAAATGAAGGTTGGTGACCATTTGAACCTAATTTATGTTGCCTTGGATTG</canonical_amplicon>
		<polymorphic_amplicon>GATCAAAACTTCGAAACAAAAAAATAAACTCACAAATAAGGAAGAAGGAATTGGAAAACTTGAAGAATTCTGCATCAGTGGTGTACTTGCACCTGGAGGACCAGTGCAGCTTCCTCCAAAAACTGAATTCGATTCACCAGACTTTTCAATTTCTTGCTCATGGKGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAAATCGGAAGAAAATGAAGGTTGGTGACCATTTGAACCTAATTTATGTTGCCTTGGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39196</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>119121</contig_pos>
        <strand>+</strand>
        <context>CCATTTGAAC[C/T]TAATTTATGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCTTGAGTCGTCAAATCGGAAGAAAATGAAGGTTGGTGACCATTTGAAC</left_flank>
        <right_flank>TAATTTATGTTGCCTTGGATTGGTTGTTCTGCCGTTATTTGCCCTTCGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCTACCCGCCCCATCAAAAATTAAACATCTCAATTTTGAATAACAAAAAATCAGAATTTAGATTTGAACAACGCTATTCTGATCAACAATCTCCAGAGTGTCAATTTTTGTTTGGGTACAGTTAATTGGGCTTTAGTGCATTTCACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTTCAGATTTTCATGGGCAGTGGCGTCCCTTTTCTTTCTTTTGGAATTTTTCTACGCCCATACATACTTTTCAGGATCAAAACTTCGAAACAAAAAAATAAACTCACAAATAAGGAAGAAGGAATTGGAAAACTTGAAGAATTCTGCATCAGTGGTGTACTTGCACCTGGAGGACCAGTGCAGCTTCCTCCAAAAACTGAATTCGATTCACCAGACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAAATCGGAAGAAAATGAAGGTTGGTGACCATTTGAACCTAATTTATGTTGCCTTGGATTGGTTGTTCTGCCGTTATTTGCCCTTCGGAGCAGCTTTAATTCATATTTATAATCGTCTTTTTGTCTGCCCTGAAAAATATGAGTTGAAAAAAACTAAGAATATGTACAGTTTCTTAACAACCATGGAAGAAAATCAGAAATTCGAAACACTCTTTCACATGTCTTTGAAATCTACTTAAGATAAATTCGCAGGATTCATGTACTGGAAATAGAGAAATCGACCGAACTCACCAGTGTTCGATTGTGAACTTCGCGACAAGTGCATTTAGTCTCGCGGCACATTTTCCATTTTTTGATGTTTGCCTGTTTTGAACCACACTTCTTCATTTTTGGGTCCGGCCTTTGGTATTGTGGAGTGCCGTCACCACCGTTTCCAGGCTGATTAAATATGCTCGAATAATGTTCTGGACCATCGGTTGATTTCTTCTCAATGTGTTGTAGAACTTGAATTTCATTATCGTCCTCGTCTAGTGAGTATT</canonical>
            <polymorphic>ACTCTACCCGCCCCATCAAAAATTAAACATCTCAATTTTGAATAACAAAAAATCAGAATTTAGATTTGAACAACGCTATTCTGATCAACAATCTCCAGAGTGTCAATTTTTGTTTGGGTACAGTTAATTGGGCTTTAGTGCATTTCACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTTCAGATTTTCATGGGCAGTGGCGTCCCTTTTCTTTCTTTTGGAATTTTTCTACGCCCATACATACTTTTCAGGATCAAAACTTCGAAACAAAAAAATAAACTCACAAATAAGGAAGAAGGAATTGGAAAACTTGAAGAATTCTGCATCAGTGGTGTACTTGCACCTGGAGGACCAGTGCAGCTTCCTCCAAAAACTGAATTCGATTCACCAGACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAAATCGGAAGAAAATGAAGGTTGGTGACCATTTGAACYTAATTTATGTTGCCTTGGATTGGTTGTTCTGCCGTTATTTGCCCTTCGGAGCAGCTTTAATTCATATTTATAATCGTCTTTTTGTCTGCCCTGAAAAATATGAGTTGAAAAAAACTAAGAATATGTACAGTTTCTTAACAACCATGGAAGAAAATCAGAAATTCGAAACACTCTTTCACATGTCTTTGAAATCTACTTAAGATAAATTCGCAGGATTCATGTACTGGAAATAGAGAAATCGACCGAACTCACCAGTGTTCGATTGTGAACTTCGCGACAAGTGCATTTAGTCTCGCGGCACATTTTCCATTTTTTGATGTTTGCCTGTTTTGAACCACACTTCTTCATTTTTGGGTCCGGCCTTTGGTATTGTGGAGTGCCGTCACCACCGTTTCCAGGCTGATTAAATATGCTCGAATAATGTTCTGGACCATCGGTTGATTTCTTCTCAATGTGTTGTAGAACTTGAATTTCATTATCGTCCTCGTCTAGTGAGTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTTTTCAATTTCTTGCTCAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCTTCCATGGTTGTTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAAATCGGAAGAAAATGAAGGTTGGTGACCATTTGAACCTAATTTATGTTGCCTTGGATTGGTTGTTCTGCCGTTATTTGCCCTTCGGAGCAGCTTTAATTCATATTTATAATCGTCTTTTTGTCTGCCCTGAAAAATATGAGTTGAAAAAAACTAAGAATATGTACAGTTTCTTAACAACCATGGAAGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>GACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAAATCGGAAGAAAATGAAGGTTGGTGACCATTTGAACYTAATTTATGTTGCCTTGGATTGGTTGTTCTGCCGTTATTTGCCCTTCGGAGCAGCTTTAATTCATATTTATAATCGTCTTTTTGTCTGCCCTGAAAAATATGAGTTGAAAAAAACTAAGAATATGTACAGTTTCTTAACAACCATGGAAGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39197</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>119150</contig_pos>
        <strand>+</strand>
        <context>ATTGGTTGTT[C/G]TGCCGTTATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAGGTTGGTGACCATTTGAACCTAATTTATGTTGCCTTGGATTGGTTGTT</left_flank>
        <right_flank>TGCCGTTATTTGCCCTTCGGAGCAGCTTTAATTCATATTTATAATCGTCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCAATTTTGAATAACAAAAAATCAGAATTTAGATTTGAACAACGCTATTCTGATCAACAATCTCCAGAGTGTCAATTTTTGTTTGGGTACAGTTAATTGGGCTTTAGTGCATTTCACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTTCAGATTTTCATGGGCAGTGGCGTCCCTTTTCTTTCTTTTGGAATTTTTCTACGCCCATACATACTTTTCAGGATCAAAACTTCGAAACAAAAAAATAAACTCACAAATAAGGAAGAAGGAATTGGAAAACTTGAAGAATTCTGCATCAGTGGTGTACTTGCACCTGGAGGACCAGTGCAGCTTCCTCCAAAAACTGAATTCGATTCACCAGACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAAATCGGAAGAAAATGAAGGTTGGTGACCATTTGAACCTAATTTATGTTGCCTTGGATTGGTTGTTCTGCCGTTATTTGCCCTTCGGAGCAGCTTTAATTCATATTTATAATCGTCTTTTTGTCTGCCCTGAAAAATATGAGTTGAAAAAAACTAAGAATATGTACAGTTTCTTAACAACCATGGAAGAAAATCAGAAATTCGAAACACTCTTTCACATGTCTTTGAAATCTACTTAAGATAAATTCGCAGGATTCATGTACTGGAAATAGAGAAATCGACCGAACTCACCAGTGTTCGATTGTGAACTTCGCGACAAGTGCATTTAGTCTCGCGGCACATTTTCCATTTTTTGATGTTTGCCTGTTTTGAACCACACTTCTTCATTTTTGGGTCCGGCCTTTGGTATTGTGGAGTGCCGTCACCACCGTTTCCAGGCTGATTAAATATGCTCGAATAATGTTCTGGACCATCGGTTGATTTCTTCTCAATGTGTTGTAGAACTTGAATTTCATTATCGTCCTCGTCTAGTGAGTATTTTATTGCTATCCCCGCCAGGTAGTGATTC</canonical>
            <polymorphic>TCTCAATTTTGAATAACAAAAAATCAGAATTTAGATTTGAACAACGCTATTCTGATCAACAATCTCCAGAGTGTCAATTTTTGTTTGGGTACAGTTAATTGGGCTTTAGTGCATTTCACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTTCAGATTTTCATGGGCAGTGGCGTCCCTTTTCTTTCTTTTGGAATTTTTCTACGCCCATACATACTTTTCAGGATCAAAACTTCGAAACAAAAAAATAAACTCACAAATAAGGAAGAAGGAATTGGAAAACTTGAAGAATTCTGCATCAGTGGTGTACTTGCACCTGGAGGACCAGTGCAGCTTCCTCCAAAAACTGAATTCGATTCACCAGACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAAATCGGAAGAAAATGAAGGTTGGTGACCATTTGAACCTAATTTATGTTGCCTTGGATTGGTTGTTSTGCCGTTATTTGCCCTTCGGAGCAGCTTTAATTCATATTTATAATCGTCTTTTTGTCTGCCCTGAAAAATATGAGTTGAAAAAAACTAAGAATATGTACAGTTTCTTAACAACCATGGAAGAAAATCAGAAATTCGAAACACTCTTTCACATGTCTTTGAAATCTACTTAAGATAAATTCGCAGGATTCATGTACTGGAAATAGAGAAATCGACCGAACTCACCAGTGTTCGATTGTGAACTTCGCGACAAGTGCATTTAGTCTCGCGGCACATTTTCCATTTTTTGATGTTTGCCTGTTTTGAACCACACTTCTTCATTTTTGGGTCCGGCCTTTGGTATTGTGGAGTGCCGTCACCACCGTTTCCAGGCTGATTAAATATGCTCGAATAATGTTCTGGACCATCGGTTGATTTCTTCTCAATGTGTTGTAGAACTTGAATTTCATTATCGTCCTCGTCTAGTGAGTATTTTATTGCTATCCCCGCCAGGTAGTGATTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTTTTCAATTTCTTGCTCAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCTTCCATGGTTGTTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAAATCGGAAGAAAATGAAGGTTGGTGACCATTTGAACCTAATTTATGTTGCCTTGGATTGGTTGTTCTGCCGTTATTTGCCCTTCGGAGCAGCTTTAATTCATATTTATAATCGTCTTTTTGTCTGCCCTGAAAAATATGAGTTGAAAAAAACTAAGAATATGTACAGTTTCTTAACAACCATGGAAGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>GACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAAATCGGAAGAAAATGAAGGTTGGTGACCATTTGAACCTAATTTATGTTGCCTTGGATTGGTTGTTSTGCCGTTATTTGCCCTTCGGAGCAGCTTTAATTCATATTTATAATCGTCTTTTTGTCTGCCCTGAAAAATATGAGTTGAAAAAAACTAAGAATATGTACAGTTTCTTAACAACCATGGAAGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39198</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>119197</contig_pos>
        <strand>+</strand>
        <context>ATTTATAATC[A/G]TCTTTTTGTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTCTGCCGTTATTTGCCCTTCGGAGCAGCTTTAATTCATATTTATAATC</left_flank>
        <right_flank>TCTTTTTGTCTGCCCTGAAAAATATGAGTTGAAAAAAACTAAGAATATGT</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTCTGATCAACAATCTCCAGAGTGTCAATTTTTGTTTGGGTACAGTTAATTGGGCTTTAGTGCATTTCACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTTCAGATTTTCATGGGCAGTGGCGTCCCTTTTCTTTCTTTTGGAATTTTTCTACGCCCATACATACTTTTCAGGATCAAAACTTCGAAACAAAAAAATAAACTCACAAATAAGGAAGAAGGAATTGGAAAACTTGAAGAATTCTGCATCAGTGGTGTACTTGCACCTGGAGGACCAGTGCAGCTTCCTCCAAAAACTGAATTCGATTCACCAGACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAAATCGGAAGAAAATGAAGGTTGGTGACCATTTGAACCTAATTTATGTTGCCTTGGATTGGTTGTTCTGCCGTTATTTGCCCTTCGGAGCAGCTTTAATTCATATTTATAATCGTCTTTTTGTCTGCCCTGAAAAATATGAGTTGAAAAAAACTAAGAATATGTACAGTTTCTTAACAACCATGGAAGAAAATCAGAAATTCGAAACACTCTTTCACATGTCTTTGAAATCTACTTAAGATAAATTCGCAGGATTCATGTACTGGAAATAGAGAAATCGACCGAACTCACCAGTGTTCGATTGTGAACTTCGCGACAAGTGCATTTAGTCTCGCGGCACATTTTCCATTTTTTGATGTTTGCCTGTTTTGAACCACACTTCTTCATTTTTGGGTCCGGCCTTTGGTATTGTGGAGTGCCGTCACCACCGTTTCCAGGCTGATTAAATATGCTCGAATAATGTTCTGGACCATCGGTTGATTTCTTCTCAATGTGTTGTAGAACTTGAATTTCATTATCGTCCTCGTCTAGTGAGTATTTTATTGCTATCCCCGCCAGGTAGTGATTCATTGTGGACGTGTCAGTCAAATTGAGTTGTAGCTTATTCATATTTGC</canonical>
            <polymorphic>TATTCTGATCAACAATCTCCAGAGTGTCAATTTTTGTTTGGGTACAGTTAATTGGGCTTTAGTGCATTTCACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTTCAGATTTTCATGGGCAGTGGCGTCCCTTTTCTTTCTTTTGGAATTTTTCTACGCCCATACATACTTTTCAGGATCAAAACTTCGAAACAAAAAAATAAACTCACAAATAAGGAAGAAGGAATTGGAAAACTTGAAGAATTCTGCATCAGTGGTGTACTTGCACCTGGAGGACCAGTGCAGCTTCCTCCAAAAACTGAATTCGATTCACCAGACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAAATCGGAAGAAAATGAAGGTTGGTGACCATTTGAACCTAATTTATGTTGCCTTGGATTGGTTGTTCTGCCGTTATTTGCCCTTCGGAGCAGCTTTAATTCATATTTATAATCRTCTTTTTGTCTGCCCTGAAAAATATGAGTTGAAAAAAACTAAGAATATGTACAGTTTCTTAACAACCATGGAAGAAAATCAGAAATTCGAAACACTCTTTCACATGTCTTTGAAATCTACTTAAGATAAATTCGCAGGATTCATGTACTGGAAATAGAGAAATCGACCGAACTCACCAGTGTTCGATTGTGAACTTCGCGACAAGTGCATTTAGTCTCGCGGCACATTTTCCATTTTTTGATGTTTGCCTGTTTTGAACCACACTTCTTCATTTTTGGGTCCGGCCTTTGGTATTGTGGAGTGCCGTCACCACCGTTTCCAGGCTGATTAAATATGCTCGAATAATGTTCTGGACCATCGGTTGATTTCTTCTCAATGTGTTGTAGAACTTGAATTTCATTATCGTCCTCGTCTAGTGAGTATTTTATTGCTATCCCCGCCAGGTAGTGATTCATTGTGGACGTGTCAGTCAAATTGAGTTGTAGCTTATTCATATTTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTTTTCAATTTCTTGCTCAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCTTCCATGGTTGTTAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAAATCGGAAGAAAATGAAGGTTGGTGACCATTTGAACCTAATTTATGTTGCCTTGGATTGGTTGTTCTGCCGTTATTTGCCCTTCGGAGCAGCTTTAATTCATATTTATAATCGTCTTTTTGTCTGCCCTGAAAAATATGAGTTGAAAAAAACTAAGAATATGTACAGTTTCTTAACAACCATGGAAGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>GACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAAATCGGAAGAAAATGAAGGTTGGTGACCATTTGAACCTAATTTATGTTGCCTTGGATTGGTTGTTCTGCCGTTATTTGCCCTTCGGAGCAGCTTTAATTCATATTTATAATCRTCTTTTTGTCTGCCCTGAAAAATATGAGTTGAAAAAAACTAAGAATATGTACAGTTTCTTAACAACCATGGAAGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39199</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>119236</contig_pos>
        <strand>+</strand>
        <context>TTGAAAAAAA[C/G]TAAGAATATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TATTTATAATCGTCTTTTTGTCTGCCCTGAAAAATATGAGTTGAAAAAAA</left_flank>
        <right_flank>TAAGAATATGTACAGTTTCTTAACAACCATGGAAGAAAATCAGAAATTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGTACAGTTAATTGGGCTTTAGTGCATTTCACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTTCAGATTTTCATGGGCAGTGGCGTCCCTTTTCTTTCTTTTGGAATTTTTCTACGCCCATACATACTTTTCAGGATCAAAACTTCGAAACAAAAAAATAAACTCACAAATAAGGAAGAAGGAATTGGAAAACTTGAAGAATTCTGCATCAGTGGTGTACTTGCACCTGGAGGACCAGTGCAGCTTCCTCCAAAAACTGAATTCGATTCACCAGACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAAATCGGAAGAAAATGAAGGTTGGTGACCATTTGAACCTAATTTATGTTGCCTTGGATTGGTTGTTCTGCCGTTATTTGCCCTTCGGAGCAGCTTTAATTCATATTTATAATCGTCTTTTTGTCTGCCCTGAAAAATATGAGTTGAAAAAAACTAAGAATATGTACAGTTTCTTAACAACCATGGAAGAAAATCAGAAATTCGAAACACTCTTTCACATGTCTTTGAAATCTACTTAAGATAAATTCGCAGGATTCATGTACTGGAAATAGAGAAATCGACCGAACTCACCAGTGTTCGATTGTGAACTTCGCGACAAGTGCATTTAGTCTCGCGGCACATTTTCCATTTTTTGATGTTTGCCTGTTTTGAACCACACTTCTTCATTTTTGGGTCCGGCCTTTGGTATTGTGGAGTGCCGTCACCACCGTTTCCAGGCTGATTAAATATGCTCGAATAATGTTCTGGACCATCGGTTGATTTCTTCTCAATGTGTTGTAGAACTTGAATTTCATTATCGTCCTCGTCTAGTGAGTATTTTATTGCTATCCCCGCCAGGTAGTGATTCATTGTGGACGTGTCAGTCAAATTGAGTTGTAGCTTATTCATATTTGCGGACGAGTTTGAAGGCGGGTACACAGGTTTTACAATATG</canonical>
            <polymorphic>GGGTACAGTTAATTGGGCTTTAGTGCATTTCACAAAACGAAAAAAAATGTGCTCGGTTAAATCAGAATGGATAATATTTTCAGATTTTCATGGGCAGTGGCGTCCCTTTTCTTTCTTTTGGAATTTTTCTACGCCCATACATACTTTTCAGGATCAAAACTTCGAAACAAAAAAATAAACTCACAAATAAGGAAGAAGGAATTGGAAAACTTGAAGAATTCTGCATCAGTGGTGTACTTGCACCTGGAGGACCAGTGCAGCTTCCTCCAAAAACTGAATTCGATTCACCAGACTTTTCAATTTCTTGCTCATGGGGTTGGCGGGAATTAGATCCACCTTGAGTCGTCAAATCGGAAGAAAATGAAGGTTGGTGACCATTTGAACCTAATTTATGTTGCCTTGGATTGGTTGTTCTGCCGTTATTTGCCCTTCGGAGCAGCTTTAATTCATATTTATAATCGTCTTTTTGTCTGCCCTGAAAAATATGAGTTGAAAAAAASTAAGAATATGTACAGTTTCTTAACAACCATGGAAGAAAATCAGAAATTCGAAACACTCTTTCACATGTCTTTGAAATCTACTTAAGATAAATTCGCAGGATTCATGTACTGGAAATAGAGAAATCGACCGAACTCACCAGTGTTCGATTGTGAACTTCGCGACAAGTGCATTTAGTCTCGCGGCACATTTTCCATTTTTTGATGTTTGCCTGTTTTGAACCACACTTCTTCATTTTTGGGTCCGGCCTTTGGTATTGTGGAGTGCCGTCACCACCGTTTCCAGGCTGATTAAATATGCTCGAATAATGTTCTGGACCATCGGTTGATTTCTTCTCAATGTGTTGTAGAACTTGAATTTCATTATCGTCCTCGTCTAGTGAGTATTTTATTGCTATCCCCGCCAGGTAGTGATTCATTGTGGACGTGTCAGTCAAATTGAGTTGTAGCTTATTCATATTTGCGGACGAGTTTGAAGGCGGGTACACAGGTTTTACAATATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTAGATCCACCTTGAGTCGT</pcr_primer_p1>
		<pcr_primer_p2>TTCAAAGACATGTGAAAGAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTAGATCCACCTTGAGTCGTCAAATCGGAAGAAAATGAAGGTTGGTGACCATTTGAACCTAATTTATGTTGCCTTGGATTGGTTGTTCTGCCGTTATTTGCCCTTCGGAGCAGCTTTAATTCATATTTATAATCGTCTTTTTGTCTGCCCTGAAAAATATGAGTTGAAAAAAACTAAGAATATGTACAGTTTCTTAACAACCATGGAAGAAAATCAGAAATTCGAAACACTCTTTCACATGTCTTTGAA</canonical_amplicon>
		<polymorphic_amplicon>ATTAGATCCACCTTGAGTCGTCAAATCGGAAGAAAATGAAGGTTGGTGACCATTTGAACCTAATTTATGTTGCCTTGGATTGGTTGTTCTGCCGTTATTTGCCCTTCGGAGCAGCTTTAATTCATATTTATAATCGTCTTTTTGTCTGCCCTGAAAAATATGAGTTGAAAAAAASTAAGAATATGTACAGTTTCTTAACAACCATGGAAGAAAATCAGAAATTCGAAACACTCTTTCACATGTCTTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39200</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>119933</contig_pos>
        <strand></strand>
        <context>cattttttgt[G/A]aacaattttg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGT</left_flank>
        <right_flank>AACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGATGTTTGCCTGTTTTGAACCACACTTCTTCATTTTTGGGTCCGGCCTTTGGTATTGTGGAGTGCCGTCACCACCGTTTCCAGGCTGATTAAATATGCTCGAATAATGTTCTGGACCATCGGTTGATTTCTTCTCAATGTGTTGTAGAACTTGAATTTCATTATCGTCCTCGTCTAGTGAGTATTTTATTGCTATCCCCGCCAGGTAGTGATTCATTGTGGACGTGTCAGTCAAATTGAGTTGTAGCTTATTCATATTTGCGGACGAGTTTGAAGGCGGGTACACAGGTTTTACAATATGTTGTGGTACAAATGGCATTGGACAGAACATGTTTGGTAACCCGAAAAAAAAGATAAATATAAAAGTGAGATACCATAACCACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAATGATTCAACATGAATTAAATGCAAATATGAAGGACTGAGGTTGAGCAAAATGTACTCAACGATCAGAAATTGTTCGTTGTATAGACTACTAGTGGTGGGCGTGATTGGGTTTTGTTTTCGATCTCTAACAGAAGACGTGCAGGAGGGCAAAACAAAAATTGTTTCCCGTGAGACACTCCGACACGTGGCCTATAGTATAGGCCTTATACTCAAATTAGATCAAATATG</canonical>
            <polymorphic>TTTGATGTTTGCCTGTTTTGAACCACACTTCTTCATTTTTGGGTCCGGCCTTTGGTATTGTGGAGTGCCGTCACCACCGTTTCCAGGCTGATTAAATATGCTCGAATAATGTTCTGGACCATCGGTTGATTTCTTCTCAATGTGTTGTAGAACTTGAATTTCATTATCGTCCTCGTCTAGTGAGTATTTTATTGCTATCCCCGCCAGGTAGTGATTCATTGTGGACGTGTCAGTCAAATTGAGTTGTAGCTTATTCATATTTGCGGACGAGTTTGAAGGCGGGTACACAGGTTTTACAATATGTTGTGGTACAAATGGCATTGGACAGAACATGTTTGGTAACCCGAAAAAAAAGATAAATATAAAAGTGAGATACCATAACCACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTRAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAATGATTCAACATGAATTAAATGCAAATATGAAGGACTGAGGTTGAGCAAAATGTACTCAACGATCAGAAATTGTTCGTTGTATAGACTACTAGTGGTGGGCGTGATTGGGTTTTGTTTTCGATCTCTAACAGAAGACGTGCAGGAGGGCAAAACAAAAATTGTTTCCCGTGAGACACTCCGACACGTGGCCTATAGTATAGGCCTTATACTCAAATTAGATCAAATATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>192 106 68 62 58 56 46 41 38 36 35 32 31 31 25 21 21 17 14 12 10 8 6 6 6 5 5 4 3 3 2</canonical_bands>
                <polymorphic_bands>192 106 68 62 58 58 56 41 38 36 35 32 31 31 25 21 21 17 14 10 8 6 6 6 5 5 4 3 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACCCAAATAAAATATACGATCA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCCTTCCTTTTTGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>CACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTRAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39201</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>119974</contig_pos>
        <strand></strand>
        <context>gagatatacg[A/G]attcaaagtt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACG</left_flank>
        <right_flank>ATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAAT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTCCGGCCTTTGGTATTGTGGAGTGCCGTCACCACCGTTTCCAGGCTGATTAAATATGCTCGAATAATGTTCTGGACCATCGGTTGATTTCTTCTCAATGTGTTGTAGAACTTGAATTTCATTATCGTCCTCGTCTAGTGAGTATTTTATTGCTATCCCCGCCAGGTAGTGATTCATTGTGGACGTGTCAGTCAAATTGAGTTGTAGCTTATTCATATTTGCGGACGAGTTTGAAGGCGGGTACACAGGTTTTACAATATGTTGTGGTACAAATGGCATTGGACAGAACATGTTTGGTAACCCGAAAAAAAAGATAAATATAAAAGTGAGATACCATAACCACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAATGATTCAACATGAATTAAATGCAAATATGAAGGACTGAGGTTGAGCAAAATGTACTCAACGATCAGAAATTGTTCGTTGTATAGACTACTAGTGGTGGGCGTGATTGGGTTTTGTTTTCGATCTCTAACAGAAGACGTGCAGGAGGGCAAAACAAAAATTGTTTCCCGTGAGACACTCCGACACGTGGCCTATAGTATAGGCCTTATACTCAAATTAGATCAAATATGTGCAATCAAATTTTTTAAACAAAAGATGTTGTGAAGAAGCC</canonical>
            <polymorphic>GGTCCGGCCTTTGGTATTGTGGAGTGCCGTCACCACCGTTTCCAGGCTGATTAAATATGCTCGAATAATGTTCTGGACCATCGGTTGATTTCTTCTCAATGTGTTGTAGAACTTGAATTTCATTATCGTCCTCGTCTAGTGAGTATTTTATTGCTATCCCCGCCAGGTAGTGATTCATTGTGGACGTGTCAGTCAAATTGAGTTGTAGCTTATTCATATTTGCGGACGAGTTTGAAGGCGGGTACACAGGTTTTACAATATGTTGTGGTACAAATGGCATTGGACAGAACATGTTTGGTAACCCGAAAAAAAAGATAAATATAAAAGTGAGATACCATAACCACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGRATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAATGATTCAACATGAATTAAATGCAAATATGAAGGACTGAGGTTGAGCAAAATGTACTCAACGATCAGAAATTGTTCGTTGTATAGACTACTAGTGGTGGGCGTGATTGGGTTTTGTTTTCGATCTCTAACAGAAGACGTGCAGGAGGGCAAAACAAAAATTGTTTCCCGTGAGACACTCCGACACGTGGCCTATAGTATAGGCCTTATACTCAAATTAGATCAAATATGTGCAATCAAATTTTTTAAACAAAAGATGTTGTGAAGAAGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>401 384 115 67 33</canonical_bands>
                <polymorphic_bands>451 401 115 33</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>170 115 89 88 80 79 56 55 52 48 37 34 33 24 19 11 10</canonical_bands>
                <polymorphic_bands>170 115 89 88 85 80 79 56 55 52 34 33 24 19 11 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACCCAAATAAAATATACGATCA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCCTTCCTTTTTGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>CACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGRATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39202</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>120005</contig_pos>
        <strand></strand>
        <context>GGAGGGAGga[G/T]ccgttattat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGA</left_flank>
        <right_flank>CCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCACCGTTTCCAGGCTGATTAAATATGCTCGAATAATGTTCTGGACCATCGGTTGATTTCTTCTCAATGTGTTGTAGAACTTGAATTTCATTATCGTCCTCGTCTAGTGAGTATTTTATTGCTATCCCCGCCAGGTAGTGATTCATTGTGGACGTGTCAGTCAAATTGAGTTGTAGCTTATTCATATTTGCGGACGAGTTTGAAGGCGGGTACACAGGTTTTACAATATGTTGTGGTACAAATGGCATTGGACAGAACATGTTTGGTAACCCGAAAAAAAAGATAAATATAAAAGTGAGATACCATAACCACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAATGATTCAACATGAATTAAATGCAAATATGAAGGACTGAGGTTGAGCAAAATGTACTCAACGATCAGAAATTGTTCGTTGTATAGACTACTAGTGGTGGGCGTGATTGGGTTTTGTTTTCGATCTCTAACAGAAGACGTGCAGGAGGGCAAAACAAAAATTGTTTCCCGTGAGACACTCCGACACGTGGCCTATAGTATAGGCCTTATACTCAAATTAGATCAAATATGTGCAATCAAATTTTTTAAACAAAAGATGTTGTGAAGAAGCCAGAGAGTGTAAGATTACCAAAAAGGAATATG</canonical>
            <polymorphic>ACCACCGTTTCCAGGCTGATTAAATATGCTCGAATAATGTTCTGGACCATCGGTTGATTTCTTCTCAATGTGTTGTAGAACTTGAATTTCATTATCGTCCTCGTCTAGTGAGTATTTTATTGCTATCCCCGCCAGGTAGTGATTCATTGTGGACGTGTCAGTCAAATTGAGTTGTAGCTTATTCATATTTGCGGACGAGTTTGAAGGCGGGTACACAGGTTTTACAATATGTTGTGGTACAAATGGCATTGGACAGAACATGTTTGGTAACCCGAAAAAAAAGATAAATATAAAAGTGAGATACCATAACCACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAKCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAATGATTCAACATGAATTAAATGCAAATATGAAGGACTGAGGTTGAGCAAAATGTACTCAACGATCAGAAATTGTTCGTTGTATAGACTACTAGTGGTGGGCGTGATTGGGTTTTGTTTTCGATCTCTAACAGAAGACGTGCAGGAGGGCAAAACAAAAATTGTTTCCCGTGAGACACTCCGACACGTGGCCTATAGTATAGGCCTTATACTCAAATTAGATCAAATATGTGCAATCAAATTTTTTAAACAAAAGATGTTGTGAAGAAGCCAGAGAGTGTAAGATTACCAAAAAGGAATATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>388 166 162 157 66 33 15 13</canonical_bands>
                <polymorphic_bands>545 166 162 66 33 15 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACCCAAATAAAATATACGATCA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCCTTCCTTTTTGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>CACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAKCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39203</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>120035</contig_pos>
        <strand></strand>
        <context>tttaaaagat[G/A]ttgtaaattt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGAT</left_flank>
        <right_flank>TTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAATAATGTTCTGGACCATCGGTTGATTTCTTCTCAATGTGTTGTAGAACTTGAATTTCATTATCGTCCTCGTCTAGTGAGTATTTTATTGCTATCCCCGCCAGGTAGTGATTCATTGTGGACGTGTCAGTCAAATTGAGTTGTAGCTTATTCATATTTGCGGACGAGTTTGAAGGCGGGTACACAGGTTTTACAATATGTTGTGGTACAAATGGCATTGGACAGAACATGTTTGGTAACCCGAAAAAAAAGATAAATATAAAAGTGAGATACCATAACCACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAATGATTCAACATGAATTAAATGCAAATATGAAGGACTGAGGTTGAGCAAAATGTACTCAACGATCAGAAATTGTTCGTTGTATAGACTACTAGTGGTGGGCGTGATTGGGTTTTGTTTTCGATCTCTAACAGAAGACGTGCAGGAGGGCAAAACAAAAATTGTTTCCCGTGAGACACTCCGACACGTGGCCTATAGTATAGGCCTTATACTCAAATTAGATCAAATATGTGCAATCAAATTTTTTAAACAAAAGATGTTGTGAAGAAGCCAGAGAGTGTAAGATTACCAAAAAGGAATATGAAATAAGAGAACTCCGACTAGAAAAAAAAG</canonical>
            <polymorphic>CGAATAATGTTCTGGACCATCGGTTGATTTCTTCTCAATGTGTTGTAGAACTTGAATTTCATTATCGTCCTCGTCTAGTGAGTATTTTATTGCTATCCCCGCCAGGTAGTGATTCATTGTGGACGTGTCAGTCAAATTGAGTTGTAGCTTATTCATATTTGCGGACGAGTTTGAAGGCGGGTACACAGGTTTTACAATATGTTGTGGTACAAATGGCATTGGACAGAACATGTTTGGTAACCCGAAAAAAAAGATAAATATAAAAGTGAGATACCATAACCACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATRTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAATGATTCAACATGAATTAAATGCAAATATGAAGGACTGAGGTTGAGCAAAATGTACTCAACGATCAGAAATTGTTCGTTGTATAGACTACTAGTGGTGGGCGTGATTGGGTTTTGTTTTCGATCTCTAACAGAAGACGTGCAGGAGGGCAAAACAAAAATTGTTTCCCGTGAGACACTCCGACACGTGGCCTATAGTATAGGCCTTATACTCAAATTAGATCAAATATGTGCAATCAAATTTTTTAAACAAAAGATGTTGTGAAGAAGCCAGAGAGTGTAAGATTACCAAAAAGGAATATGAAATAAGAGAACTCCGACTAGAAAAAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCCAAATAAAATATACGATCA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCCTTCCTTTTTGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>CACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATRTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39204</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>120076</contig_pos>
        <strand></strand>
        <context>tcatagcgtc[C/A]ccagcatttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTC</left_flank>
        <right_flank>CCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTGTAGAACTTGAATTTCATTATCGTCCTCGTCTAGTGAGTATTTTATTGCTATCCCCGCCAGGTAGTGATTCATTGTGGACGTGTCAGTCAAATTGAGTTGTAGCTTATTCATATTTGCGGACGAGTTTGAAGGCGGGTACACAGGTTTTACAATATGTTGTGGTACAAATGGCATTGGACAGAACATGTTTGGTAACCCGAAAAAAAAGATAAATATAAAAGTGAGATACCATAACCACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAATGATTCAACATGAATTAAATGCAAATATGAAGGACTGAGGTTGAGCAAAATGTACTCAACGATCAGAAATTGTTCGTTGTATAGACTACTAGTGGTGGGCGTGATTGGGTTTTGTTTTCGATCTCTAACAGAAGACGTGCAGGAGGGCAAAACAAAAATTGTTTCCCGTGAGACACTCCGACACGTGGCCTATAGTATAGGCCTTATACTCAAATTAGATCAAATATGTGCAATCAAATTTTTTAAACAAAAGATGTTGTGAAGAAGCCAGAGAGTGTAAGATTACCAAAAAGGAATATGAAATAAGAGAACTCCGACTAGAAAAAAAAGAACGAAAGATCGCTTTTTTTTCGTGTTTTGTGTGAACTCGA</canonical>
            <polymorphic>GTTGTAGAACTTGAATTTCATTATCGTCCTCGTCTAGTGAGTATTTTATTGCTATCCCCGCCAGGTAGTGATTCATTGTGGACGTGTCAGTCAAATTGAGTTGTAGCTTATTCATATTTGCGGACGAGTTTGAAGGCGGGTACACAGGTTTTACAATATGTTGTGGTACAAATGGCATTGGACAGAACATGTTTGGTAACCCGAAAAAAAAGATAAATATAAAAGTGAGATACCATAACCACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCMCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAATGATTCAACATGAATTAAATGCAAATATGAAGGACTGAGGTTGAGCAAAATGTACTCAACGATCAGAAATTGTTCGTTGTATAGACTACTAGTGGTGGGCGTGATTGGGTTTTGTTTTCGATCTCTAACAGAAGACGTGCAGGAGGGCAAAACAAAAATTGTTTCCCGTGAGACACTCCGACACGTGGCCTATAGTATAGGCCTTATACTCAAATTAGATCAAATATGTGCAATCAAATTTTTTAAACAAAAGATGTTGTGAAGAAGCCAGAGAGTGTAAGATTACCAAAAAGGAATATGAAATAAGAGAACTCCGACTAGAAAAAAAAGAACGAAAGATCGCTTTTTTTTCGTGTTTTGTGTGAACTCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCCAAATAAAATATACGATCA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCCTTCCTTTTTGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>CACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCMCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39205</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>120094</contig_pos>
        <strand></strand>
        <context>tttatctgtt[G/A]atcgattttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTT</left_flank>
        <right_flank>ATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTATCGTCCTCGTCTAGTGAGTATTTTATTGCTATCCCCGCCAGGTAGTGATTCATTGTGGACGTGTCAGTCAAATTGAGTTGTAGCTTATTCATATTTGCGGACGAGTTTGAAGGCGGGTACACAGGTTTTACAATATGTTGTGGTACAAATGGCATTGGACAGAACATGTTTGGTAACCCGAAAAAAAAGATAAATATAAAAGTGAGATACCATAACCACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAATGATTCAACATGAATTAAATGCAAATATGAAGGACTGAGGTTGAGCAAAATGTACTCAACGATCAGAAATTGTTCGTTGTATAGACTACTAGTGGTGGGCGTGATTGGGTTTTGTTTTCGATCTCTAACAGAAGACGTGCAGGAGGGCAAAACAAAAATTGTTTCCCGTGAGACACTCCGACACGTGGCCTATAGTATAGGCCTTATACTCAAATTAGATCAAATATGTGCAATCAAATTTTTTAAACAAAAGATGTTGTGAAGAAGCCAGAGAGTGTAAGATTACCAAAAAGGAATATGAAATAAGAGAACTCCGACTAGAAAAAAAAGAACGAAAGATCGCTTTTTTTTCGTGTTTTGTGTGAACTCGAGTAGAGATCAAGGAAATC</canonical>
            <polymorphic>CATTATCGTCCTCGTCTAGTGAGTATTTTATTGCTATCCCCGCCAGGTAGTGATTCATTGTGGACGTGTCAGTCAAATTGAGTTGTAGCTTATTCATATTTGCGGACGAGTTTGAAGGCGGGTACACAGGTTTTACAATATGTTGTGGTACAAATGGCATTGGACAGAACATGTTTGGTAACCCGAAAAAAAAGATAAATATAAAAGTGAGATACCATAACCACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTRATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAATGATTCAACATGAATTAAATGCAAATATGAAGGACTGAGGTTGAGCAAAATGTACTCAACGATCAGAAATTGTTCGTTGTATAGACTACTAGTGGTGGGCGTGATTGGGTTTTGTTTTCGATCTCTAACAGAAGACGTGCAGGAGGGCAAAACAAAAATTGTTTCCCGTGAGACACTCCGACACGTGGCCTATAGTATAGGCCTTATACTCAAATTAGATCAAATATGTGCAATCAAATTTTTTAAACAAAAGATGTTGTGAAGAAGCCAGAGAGTGTAAGATTACCAAAAAGGAATATGAAATAAGAGAACTCCGACTAGAAAAAAAAGAACGAAAGATCGCTTTTTTTTCGTGTTTTGTGTGAACTCGAGTAGAGATCAAGGAAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>260 239 172 120 98 59 39 13</canonical_bands>
                <polymorphic_bands>432 239 120 98 59 39 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACCCAAATAAAATATACGATCA</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCCTTCCTTTTTGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>CACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTRATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39206</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>120166</contig_pos>
        <strand>+</strand>
        <context>CAATGTTGGG[C/T]AAAAAATCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGG</left_flank>
        <right_flank>AAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAATGATTCAACAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAATTGAGTTGTAGCTTATTCATATTTGCGGACGAGTTTGAAGGCGGGTACACAGGTTTTACAATATGTTGTGGTACAAATGGCATTGGACAGAACATGTTTGGTAACCCGAAAAAAAAGATAAATATAAAAGTGAGATACCATAACCACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAATGATTCAACATGAATTAAATGCAAATATGAAGGACTGAGGTTGAGCAAAATGTACTCAACGATCAGAAATTGTTCGTTGTATAGACTACTAGTGGTGGGCGTGATTGGGTTTTGTTTTCGATCTCTAACAGAAGACGTGCAGGAGGGCAAAACAAAAATTGTTTCCCGTGAGACACTCCGACACGTGGCCTATAGTATAGGCCTTATACTCAAATTAGATCAAATATGTGCAATCAAATTTTTTAAACAAAAGATGTTGTGAAGAAGCCAGAGAGTGTAAGATTACCAAAAAGGAATATGAAATAAGAGAACTCCGACTAGAAAAAAAAGAACGAAAGATCGCTTTTTTTTCGTGTTTTGTGTGAACTCGAGTAGAGATCAAGGAAATCGAATCTTAATCTTGTTTGCATTAATTCGGTTGGTATTTTGAACAGAAATTTGTAGAAAAAAAGAGGAGGAAG</canonical>
            <polymorphic>TCAAATTGAGTTGTAGCTTATTCATATTTGCGGACGAGTTTGAAGGCGGGTACACAGGTTTTACAATATGTTGTGGTACAAATGGCATTGGACAGAACATGTTTGGTAACCCGAAAAAAAAGATAAATATAAAAGTGAGATACCATAACCACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGYAAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAATGATTCAACATGAATTAAATGCAAATATGAAGGACTGAGGTTGAGCAAAATGTACTCAACGATCAGAAATTGTTCGTTGTATAGACTACTAGTGGTGGGCGTGATTGGGTTTTGTTTTCGATCTCTAACAGAAGACGTGCAGGAGGGCAAAACAAAAATTGTTTCCCGTGAGACACTCCGACACGTGGCCTATAGTATAGGCCTTATACTCAAATTAGATCAAATATGTGCAATCAAATTTTTTAAACAAAAGATGTTGTGAAGAAGCCAGAGAGTGTAAGATTACCAAAAAGGAATATGAAATAAGAGAACTCCGACTAGAAAAAAAAGAACGAAAGATCGCTTTTTTTTCGTGTTTTGTGTGAACTCGAGTAGAGATCAAGGAAATCGAATCTTAATCTTGTTTGCATTAATTCGGTTGGTATTTTGAACAGAAATTTGTAGAAAAAAAGAGGAGGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCCAAATAAAATATACGATCA</pcr_primer_p1>
		<pcr_primer_p2>TCAACCTCAGTCCTTCATATTT</pcr_primer_p2>
		<pcr_amplicon_size>434</pcr_amplicon_size>
		<canonical_amplicon>CACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGAAAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAATGATTCAACATGAATTAAATGCAAATATGAAGGACTGAGGTTGA</canonical_amplicon>
		<polymorphic_amplicon>CACCCAAATAAAATATACGATCACAATTTTGAGCCAATTTATCTCATCCCTCGTGAAAGATATCAAAAAGTGGTTAACTAATAAAACAATTCTTAAGTTCTGATGAGCATTTTTTGTGAACAATTTTGTGATATCTTTTACAGGAAATGAGATATACGAATTCAAAGTTAACTGCTCATGGAGGGAGGAGCCGTTATTATCTCAGTAATTTTAAAAGATGTTGTAAATTTGCCAACTGATAAAATGTTTGTCATAGCGTCCCCAGCATTTTATCTGTTGATCGATTTTTGATATCTCTTGTAGAAACTAAGATAATTAAGTGCAATTTTCGGAAAAATCGCAATGTTGGGYAAAAAATCAAAAAGGAAGGAAAATGTGAACTATCATCAATGATTCAACATGAATTAAATGCAAATATGAAGGACTGAGGTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39207</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>171844</contig_pos>
        <strand>+</strand>
        <context>GTGAGTCTTG[C/T]ATTTTTCGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAATAAACACAGAAACTCAACTGAACACTGTGCGGATTTTGTGAGTCTTG</left_flank>
        <right_flank>ATTTTTCGATTGAATGAATTCGTTTCTTTTTCAGATAGATATCCACATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTGAAAAGAAACCGAATGTCGGTGATACTAGCTCTGATTAGATCGAAGAACTTTCCAGTTGCATTGACACGTCTTTTATCATCAAAACTTGCACGCCTATACGAAACATCATGAAACCGGAAGTACAATACCAATATACACAATTGATAAGATTGATAAGGGCGGGGCTTTAATACTATATAAACATTCAGTTAGAAAATTTGAAGTATCATATTCAGTTTTGCTTCCCTCTTCCTTTTCATTTGATTTTTGATAAAATGAAAACCCTAATTCTTCTATTTCTACTATTGTGCTTAAGTTATGCCACCCATAGATCTCTGAAATGCTACTATTATGATGAGCTCACCAAAGAGAAATTTATCGAGCACGGACGGACTGAATGCTATGCCAGATACGATTTCAGTATGAAAAACGCATATTTTGGTGGAACCAGAAGACAGTATGTGCCTAATAAACACAGAAACTCAACTGAACACTGTGCGGATTTTGTGAGTCTTGTATTTTTCGATTGAATGAATTCGTTTCTTTTTCAGATAGATATCCACATCAACGGTACAGCTAGGCCAGTGTACATATGTTACTGTTTTGAGGATTACTGTAATTTCCCATTCACATTCAACGAGTTTGTCGCCAGGGGACGTACACTGCAGCCTTTTTACGACGATTGACATTTTAATGTTATTTGATCTCAAATATAGGCAGAGTATAAATAAAGATTTTATAATTTTTTGTTTCGTTTGTATGCATCAAAAAGGATAGTTTTCAATCGTCACAATCTTAGTACAAAACTTAATATTTTCTTTGTTGCTGTTAAAAAACTCGAATTATCGAATTAGTAACGCATCTTTTATAATCTGTAAAATTGTTCTTTTCCAATTTTAAGTTTGTGGACAGACGTCATTTTTGAATCTATGATTTATTGGAAACCAATGAGTAAAAAGAACAAGAACTTTATACATCACTGACCGTCACCCCGACTTACCGATAAGAAATTTGATA</canonical>
            <polymorphic>ATTGAAAAGAAACCGAATGTCGGTGATACTAGCTCTGATTAGATCGAAGAACTTTCCAGTTGCATTGACACGTCTTTTATCATCAAAACTTGCACGCCTATACGAAACATCATGAAACCGGAAGTACAATACCAATATACACAATTGATAAGATTGATAAGGGCGGGGCTTTAATACTATATAAACATTCAGTTAGAAAATTTGAAGTATCATATTCAGTTTTGCTTCCCTCTTCCTTTTCATTTGATTTTTGATAAAATGAAAACCCTAATTCTTCTATTTCTACTATTGTGCTTAAGTTATGCCACCCATAGATCTCTGAAATGCTACTATTATGATGAGCTCACCAAAGAGAAATTTATCGAGCACGGACGGACTGAATGCTATGCCAGATACGATTTCAGTATGAAAAACGCATATTTTGGTGGAACCAGAAGACAGTATGTGCCTAATAAACACAGAAACTCAACTGAACACTGTGCGGATTTTGTGAGTCTTGYATTTTTCGATTGAATGAATTCGTTTCTTTTTCAGATAGATATCCACATCAACGGTACAGCTAGGCCAGTGTACATATGTTACTGTTTTGAGGATTACTGTAATTTCCCATTCACATTCAACGAGTTTGTCGCCAGGGGACGTACACTGCAGCCTTTTTACGACGATTGACATTTTAATGTTATTTGATCTCAAATATAGGCAGAGTATAAATAAAGATTTTATAATTTTTTGTTTCGTTTGTATGCATCAAAAAGGATAGTTTTCAATCGTCACAATCTTAGTACAAAACTTAATATTTTCTTTGTTGCTGTTAAAAAACTCGAATTATCGAATTAGTAACGCATCTTTTATAATCTGTAAAATTGTTCTTTTCCAATTTTAAGTTTGTGGACAGACGTCATTTTTGAATCTATGATTTATTGGAAACCAATGAGTAAAAAGAACAAGAACTTTATACATCACTGACCGTCACCCCGACTTACCGATAAGAAATTTGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAAGACAGTATGTGCCTAATAA</pcr_primer_p1>
		<pcr_primer_p2>ATTAAAATGTCAATCGTCGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAGAAGACAGTATGTGCCTAATAAACACAGAAACTCAACTGAACACTGTGCGGATTTTGTGAGTCTTGTATTTTTCGATTGAATGAATTCGTTTCTTTTTCAGATAGATATCCACATCAACGGTACAGCTAGGCCAGTGTACATATGTTACTGTTTTGAGGATTACTGTAATTTCCCATTCACATTCAACGAGTTTGTCGCCAGGGGACGTACACTGCAGCCTTTTTACGACGATTGACATTTTAAT</canonical_amplicon>
		<polymorphic_amplicon>CAGAAGACAGTATGTGCCTAATAAACACAGAAACTCAACTGAACACTGTGCGGATTTTGTGAGTCTTGYATTTTTCGATTGAATGAATTCGTTTCTTTTTCAGATAGATATCCACATCAACGGTACAGCTAGGCCAGTGTACATATGTTACTGTTTTGAGGATTACTGTAATTTCCCATTCACATTCAACGAGTTTGTCGCCAGGGGACGTACACTGCAGCCTTTTTACGACGATTGACATTTTAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39208</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>186164</contig_pos>
        <strand>+</strand>
        <context>GCAATATACG[A/G]TACTCGATTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAATCGTTCATTGTGCCCAGACACAATTAGAATACGACGCAATATACG</left_flank>
        <right_flank>TACTCGATTATCTACAACTCTGGAATAACAGTCTCAAAGCGATAAATTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAAAATGTCATTGAAAACGCACATTGCGAAAAATAGGCCGTCGGTTAAAATTGTTTGGAAAACCCGCCAAGAAAATATTTAGCAGGGTTGCAACCGGCCGGGCCGGGCCGGGCCGAGATTATTTTTTCTCCGGCCCGCGCGGGGCGGTGGCCCGGGCCAGCCCGGACCGGACGGTTCGGCCGGTTCGGACCGTTCTAATTTAAGAAAAAACAGAAGTTATTGAAAAATTATTTGAATTTATTTCTTACACGTGGGTCGAATTGCCTATGGAACGCATCAGCTGAATATCAGGACATTTCCAAGTCATAAAAGTTGGTGGCCAACAAAACTAGAGTTTCAAAGTTTAGGCCACCAATTTAAAATGGTCTGGAAAACACATGAGGTGTAGGCTAGGCTAATTTTTCAACTACGGAGCCTGAACTTTTTCGAAAAATCGTCCGAACCTAACGAAAATCGTTCATTGTGCCCAGACACAATTAGAATACGACGCAATATACGGTACTCGATTATCTACAACTCTGGAATAACAGTCTCAAAGCGATAAATTGTGAGTTTTTCAAAGATTCGATAATAAACTATAAAGTTTAATTATGATATTTCTTCGAAATTAGTCACCTTTTGTGGTATCTTATCTTGCAAAATTTTCTTTCAACGAAAGAACTCAAAAAACGCAATATTATTCAAAGGAACATGACGTCAGTAGCATTGCGGGTCTCGTCGCGGCATTTCTTTTTCTCTTTCTTTTGAACGTTATTTCGCGTCTAGCTCACTACGTTTCCATTTTGAACGGGAGAATTAGTAAAAAAATATACTCGAAAGGTTTTTCGCTGGGAATTTCAGAAAATCAGCGAAAACATTAAAACACATAAAAAAAAGGAAAACTCGTAATTTTATTTTCAGGGACAAAATCAACTAACAAATGAATTGACATAGGAGGAAGTTCGAAGATATTTTCATTGTTTGTTATCAGTCTTCTCGACCTTCATAAAATGTGTGGAA</canonical>
            <polymorphic>CCAAAATGTCATTGAAAACGCACATTGCGAAAAATAGGCCGTCGGTTAAAATTGTTTGGAAAACCCGCCAAGAAAATATTTAGCAGGGTTGCAACCGGCCGGGCCGGGCCGGGCCGAGATTATTTTTTCTCCGGCCCGCGCGGGGCGGTGGCCCGGGCCAGCCCGGACCGGACGGTTCGGCCGGTTCGGACCGTTCTAATTTAAGAAAAAACAGAAGTTATTGAAAAATTATTTGAATTTATTTCTTACACGTGGGTCGAATTGCCTATGGAACGCATCAGCTGAATATCAGGACATTTCCAAGTCATAAAAGTTGGTGGCCAACAAAACTAGAGTTTCAAAGTTTAGGCCACCAATTTAAAATGGTCTGGAAAACACATGAGGTGTAGGCTAGGCTAATTTTTCAACTACGGAGCCTGAACTTTTTCGAAAAATCGTCCGAACCTAACGAAAATCGTTCATTGTGCCCAGACACAATTAGAATACGACGCAATATACGRTACTCGATTATCTACAACTCTGGAATAACAGTCTCAAAGCGATAAATTGTGAGTTTTTCAAAGATTCGATAATAAACTATAAAGTTTAATTATGATATTTCTTCGAAATTAGTCACCTTTTGTGGTATCTTATCTTGCAAAATTTTCTTTCAACGAAAGAACTCAAAAAACGCAATATTATTCAAAGGAACATGACGTCAGTAGCATTGCGGGTCTCGTCGCGGCATTTCTTTTTCTCTTTCTTTTGAACGTTATTTCGCGTCTAGCTCACTACGTTTCCATTTTGAACGGGAGAATTAGTAAAAAAATATACTCGAAAGGTTTTTCGCTGGGAATTTCAGAAAATCAGCGAAAACATTAAAACACATAAAAAAAAGGAAAACTCGTAATTTTATTTTCAGGGACAAAATCAACTAACAAATGAATTGACATAGGAGGAAGTTCGAAGATATTTTCATTGTTTGTTATCAGTCTTCTCGACCTTCATAAAATGTGTGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>470 307 174 31 18</canonical_bands>
                <polymorphic_bands>470 338 174 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAACGAAAATCGTTCATTGTG</pcr_primer_p1>
		<pcr_primer_p2>ACGTCATGTTCCTTTGAATAATA</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TAACGAAAATCGTTCATTGTGCCCAGACACAATTAGAATACGACGCAATATACGGTACTCGATTATCTACAACTCTGGAATAACAGTCTCAAAGCGATAAATTGTGAGTTTTTCAAAGATTCGATAATAAACTATAAAGTTTAATTATGATATTTCTTCGAAATTAGTCACCTTTTGTGGTATCTTATCTTGCAAAATTTTCTTTCAACGAAAGAACTCAAAAAACGCAATATTATTCAAAGGAACATGACGT</canonical_amplicon>
		<polymorphic_amplicon>TAACGAAAATCGTTCATTGTGCCCAGACACAATTAGAATACGACGCAATATACGRTACTCGATTATCTACAACTCTGGAATAACAGTCTCAAAGCGATAAATTGTGAGTTTTTCAAAGATTCGATAATAAACTATAAAGTTTAATTATGATATTTCTTCGAAATTAGTCACCTTTTGTGGTATCTTATCTTGCAAAATTTTCTTTCAACGAAAGAACTCAAAAAACGCAATATTATTCAAAGGAACATGACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39209</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>186235</contig_pos>
        <strand>+</strand>
        <context>AAGATTCGAT[A/G]ATAAACTATA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGGAATAACAGTCTCAAAGCGATAAATTGTGAGTTTTTCAAAGATTCGAT</left_flank>
        <right_flank>ATAAACTATAAAGTTTAATTATGATATTTCTTCGAAATTAGTCACCTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAATATTTAGCAGGGTTGCAACCGGCCGGGCCGGGCCGGGCCGAGATTATTTTTTCTCCGGCCCGCGCGGGGCGGTGGCCCGGGCCAGCCCGGACCGGACGGTTCGGCCGGTTCGGACCGTTCTAATTTAAGAAAAAACAGAAGTTATTGAAAAATTATTTGAATTTATTTCTTACACGTGGGTCGAATTGCCTATGGAACGCATCAGCTGAATATCAGGACATTTCCAAGTCATAAAAGTTGGTGGCCAACAAAACTAGAGTTTCAAAGTTTAGGCCACCAATTTAAAATGGTCTGGAAAACACATGAGGTGTAGGCTAGGCTAATTTTTCAACTACGGAGCCTGAACTTTTTCGAAAAATCGTCCGAACCTAACGAAAATCGTTCATTGTGCCCAGACACAATTAGAATACGACGCAATATACGGTACTCGATTATCTACAACTCTGGAATAACAGTCTCAAAGCGATAAATTGTGAGTTTTTCAAAGATTCGATAATAAACTATAAAGTTTAATTATGATATTTCTTCGAAATTAGTCACCTTTTGTGGTATCTTATCTTGCAAAATTTTCTTTCAACGAAAGAACTCAAAAAACGCAATATTATTCAAAGGAACATGACGTCAGTAGCATTGCGGGTCTCGTCGCGGCATTTCTTTTTCTCTTTCTTTTGAACGTTATTTCGCGTCTAGCTCACTACGTTTCCATTTTGAACGGGAGAATTAGTAAAAAAATATACTCGAAAGGTTTTTCGCTGGGAATTTCAGAAAATCAGCGAAAACATTAAAACACATAAAAAAAAGGAAAACTCGTAATTTTATTTTCAGGGACAAAATCAACTAACAAATGAATTGACATAGGAGGAAGTTCGAAGATATTTTCATTGTTTGTTATCAGTCTTCTCGACCTTCATAAAATGTGTGGAAAAATGGATACACCTGCAGATGAAGAATGAAAAGAAGATGGAGAAGATGAAAAAATGACATTATGACAAAAA</canonical>
            <polymorphic>GAAAATATTTAGCAGGGTTGCAACCGGCCGGGCCGGGCCGGGCCGAGATTATTTTTTCTCCGGCCCGCGCGGGGCGGTGGCCCGGGCCAGCCCGGACCGGACGGTTCGGCCGGTTCGGACCGTTCTAATTTAAGAAAAAACAGAAGTTATTGAAAAATTATTTGAATTTATTTCTTACACGTGGGTCGAATTGCCTATGGAACGCATCAGCTGAATATCAGGACATTTCCAAGTCATAAAAGTTGGTGGCCAACAAAACTAGAGTTTCAAAGTTTAGGCCACCAATTTAAAATGGTCTGGAAAACACATGAGGTGTAGGCTAGGCTAATTTTTCAACTACGGAGCCTGAACTTTTTCGAAAAATCGTCCGAACCTAACGAAAATCGTTCATTGTGCCCAGACACAATTAGAATACGACGCAATATACGGTACTCGATTATCTACAACTCTGGAATAACAGTCTCAAAGCGATAAATTGTGAGTTTTTCAAAGATTCGATRATAAACTATAAAGTTTAATTATGATATTTCTTCGAAATTAGTCACCTTTTGTGGTATCTTATCTTGCAAAATTTTCTTTCAACGAAAGAACTCAAAAAACGCAATATTATTCAAAGGAACATGACGTCAGTAGCATTGCGGGTCTCGTCGCGGCATTTCTTTTTCTCTTTCTTTTGAACGTTATTTCGCGTCTAGCTCACTACGTTTCCATTTTGAACGGGAGAATTAGTAAAAAAATATACTCGAAAGGTTTTTCGCTGGGAATTTCAGAAAATCAGCGAAAACATTAAAACACATAAAAAAAAGGAAAACTCGTAATTTTATTTTCAGGGACAAAATCAACTAACAAATGAATTGACATAGGAGGAAGTTCGAAGATATTTTCATTGTTTGTTATCAGTCTTCTCGACCTTCATAAAATGTGTGGAAAAATGGATACACCTGCAGATGAAGAATGAAAAGAAGATGGAGAAGATGAAAAAATGACATTATGACAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGATTATCTACAACTCTGGAATA</pcr_primer_p1>
		<pcr_primer_p2>TAACGTTCAAAAGAAAGAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCGATTATCTACAACTCTGGAATAACAGTCTCAAAGCGATAAATTGTGAGTTTTTCAAAGATTCGATAATAAACTATAAAGTTTAATTATGATATTTCTTCGAAATTAGTCACCTTTTGTGGTATCTTATCTTGCAAAATTTTCTTTCAACGAAAGAACTCAAAAAACGCAATATTATTCAAAGGAACATGACGTCAGTAGCATTGCGGGTCTCGTCGCGGCATTTCTTTTTCTCTTTCTTTTGAACGTTA</canonical_amplicon>
		<polymorphic_amplicon>TCGATTATCTACAACTCTGGAATAACAGTCTCAAAGCGATAAATTGTGAGTTTTTCAAAGATTCGATRATAAACTATAAAGTTTAATTATGATATTTCTTCGAAATTAGTCACCTTTTGTGGTATCTTATCTTGCAAAATTTTCTTTCAACGAAAGAACTCAAAAAACGCAATATTATTCAAAGGAACATGACGTCAGTAGCATTGCGGGTCTCGTCGCGGCATTTCTTTTTCTCTTTCTTTTGAACGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39210</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>256136</contig_pos>
        <strand>+</strand>
        <context>GAGTTTTTTT[A/G]GAAAATGGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGTTGCTGAATGAACGAAAAAATGAATGGATTTATATCAGGAGTTTTTTT</left_flank>
        <right_flank>GAAAATGGGAGGCGTATTCGTAGTGCTCTCTGAGCATCGATTTTTATCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATCGATTTGCGGCTTCATGGGCTTTTGTGGAAGCTCCTCATCCTCAGCAGAATTAAAATCAAATTGCGGCTCCATCGCTTTTGATTGGAGCTTTTCATCCTCAGCAGTTTCAGAAACAATTTGTGGTTTCACTTGAATCGGGGTATAGACGCTCGTCTCGGGATTGATATAGGAGTCCAAAGAATCCAATGGCTGAGCCGCATATACACCGGGTTGATAATAATCAACATTTTTCAAAAGGATCATCTTTTGGTGATCCTTAGGAAGAGGATCGTAGTTGTATTCCTTGAGTGGTTCTAAAGGCATGGGCAGTGTGGTGAATCCTTGGTGTTGGTCATTCGACATTTTTGGTTGGTTTGTGTTTTCACTGTAAACTTGTTGTCTTAAAATCAACGAGTTTACAAGACAAAGGAACAACAAAAAAGAAAAAAGAAGAGTAAGAGATGATGTTGCTGAATGAACGAAAAAATGAATGGATTTATATCAGGAGTTTTTTTTGAAAATGGGAGGCGTATTCGTAGTGCTCTCTGAGCATCGATTTTTATCAAAAATATCAAAAAGGTCATTTTTAAAAAATTTTTACGAAAAATTACTAACATGTACGTTTCCTCAAATTTTCTCAAAAGAGTTTCTCGGAACTTATCACAAAACAAATTTCTCAAATTCCCCACATTTTCTCTAAAACATGAACTCCAATTGGCGTTAGTGACAAAGAGAGCGTAAACGCAGAAGAAAAAATAAACGACAAAAAATCTAGAAATTAAAGAGTTGGCATTTAGTATGTTCAGAAATTTGAATAATTGAGCAAAACGTGAATTATAAAAAAACATAGAATTGGTTGTATGGAGATGGAAAAAGTTTGAAATGGACCCCATTAAAATTTTTTTATGAAATCGGGAAAATAAAATGGAGTCATAGTAGAATACAAATCTCTATATACTTTGAAAATGAGGGAATGATAATTTAAATTAGAAAAAAAAAGAGATTTTTCAGAAATT</canonical>
            <polymorphic>AAATCGATTTGCGGCTTCATGGGCTTTTGTGGAAGCTCCTCATCCTCAGCAGAATTAAAATCAAATTGCGGCTCCATCGCTTTTGATTGGAGCTTTTCATCCTCAGCAGTTTCAGAAACAATTTGTGGTTTCACTTGAATCGGGGTATAGACGCTCGTCTCGGGATTGATATAGGAGTCCAAAGAATCCAATGGCTGAGCCGCATATACACCGGGTTGATAATAATCAACATTTTTCAAAAGGATCATCTTTTGGTGATCCTTAGGAAGAGGATCGTAGTTGTATTCCTTGAGTGGTTCTAAAGGCATGGGCAGTGTGGTGAATCCTTGGTGTTGGTCATTCGACATTTTTGGTTGGTTTGTGTTTTCACTGTAAACTTGTTGTCTTAAAATCAACGAGTTTACAAGACAAAGGAACAACAAAAAAGAAAAAAGAAGAGTAAGAGATGATGTTGCTGAATGAACGAAAAAATGAATGGATTTATATCAGGAGTTTTTTTRGAAAATGGGAGGCGTATTCGTAGTGCTCTCTGAGCATCGATTTTTATCAAAAATATCAAAAAGGTCATTTTTAAAAAATTTTTACGAAAAATTACTAACATGTACGTTTCCTCAAATTTTCTCAAAAGAGTTTCTCGGAACTTATCACAAAACAAATTTCTCAAATTCCCCACATTTTCTCTAAAACATGAACTCCAATTGGCGTTAGTGACAAAGAGAGCGTAAACGCAGAAGAAAAAATAAACGACAAAAAATCTAGAAATTAAAGAGTTGGCATTTAGTATGTTCAGAAATTTGAATAATTGAGCAAAACGTGAATTATAAAAAAACATAGAATTGGTTGTATGGAGATGGAAAAAGTTTGAAATGGACCCCATTAAAATTTTTTTATGAAATCGGGAAAATAAAATGGAGTCATAGTAGAATACAAATCTCTATATACTTTGAAAATGAGGGAATGATAATTTAAATTAGAAAAAAAAAGAGATTTTTCAGAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTTACAAGACAAAGGAACAAC</pcr_primer_p1>
		<pcr_primer_p2>GATAAGTTCCGAGAAACTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGTTTACAAGACAAAGGAACAACAAAAAAGAAAAAAGAAGAGTAAGAGATGATGTTGCTGAATGAACGAAAAAATGAATGGATTTATATCAGGAGTTTTTTTTGAAAATGGGAGGCGTATTCGTAGTGCTCTCTGAGCATCGATTTTTATCAAAAATATCAAAAAGGTCATTTTTAAAAAATTTTTACGAAAAATTACTAACATGTACGTTTCCTCAAATTTTCTCAAAAGAGTTTCTCGGAACTTATC</canonical_amplicon>
		<polymorphic_amplicon>AGTTTACAAGACAAAGGAACAACAAAAAAGAAAAAAGAAGAGTAAGAGATGATGTTGCTGAATGAACGAAAAAATGAATGGATTTATATCAGGAGTTTTTTTRGAAAATGGGAGGCGTATTCGTAGTGCTCTCTGAGCATCGATTTTTATCAAAAATATCAAAAAGGTCATTTTTAAAAAATTTTTACGAAAAATTACTAACATGTACGTTTCCTCAAATTTTCTCAAAAGAGTTTCTCGGAACTTATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39211</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>269762</contig_pos>
        <strand>-</strand>
        <context>TCCACTGGGA[A/G]CCAACAATCC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCTAGAGCTCGAAAATATCACAGCAAAGATTGAGCGCAGGTCCACTGGGA</left_flank>
        <right_flank>CCAACAATCCTACTGTAAAATGCTATTCTGCTAAATATTCCTATCATGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGGGTTGCAATCTGACGGGCTGGCCGGCGGGCCGGCCCGAGGGAAAAAACCAGGGCCCGGCCGGCCGGCAATTAATTAATATTTGAAAAAAAAGAAAAAAATAGCCACGAAATTTCCACACTGGCTCGACCGATTCTCTCACTAATTGTAGTGATTTTTCTAGTTAATTTTATGTTACTTTTCTATCTTTTTTGTTGGATTGGTTGATATGAGCTTTAATTTTCTCCCCCGGTTTCCATTTCTTTGTTTCCCCTTGTTCATTTATACGGTTTTTACATTGTTATGCTACTTGTTAAGAAATAAATTCAAATAATTCTTCAATAATTTCTGTTTTTTCTTAAATTCGAACGGGCCGAACCTGTTTTACCTGTCGGTCTACCTTGTATTCCAACAGATATTGGACCGATCTCAGTACGACCTGCCCTTGATCTTTGTTTTCTGAGATTTTCTAGAGCTCGAAAATATCACAGCAAAGATTGAGCGCAGGTCCACTGGGACCCAACAATCCTACTGTAAAATGCTATTCTGCTAAATATTCCTATCATGAATGGTCAGGTTACCAGTCGACCTGTGCTGCCTCTTTCTTTCGTGATATTTTTCACAGCGTAAAAATATCACAAGAACAGATCCAGCACAGGTCGTTTACCTGACATTTATTCTGCTATTTGACACAAAAGGAATGATAACAAATATACCCGTGTTAGACTTTTCTTGTGATATTTCTCACTGAGCGAAATATCACAGAACAGTTCAAGCACGGGTATCACACAGGATCTTGCCTTTTTTATTCGAATTGAATACTGGTGAGTTGGAGTAATTATGATTTTCAGGAAGATAATAAAGCTAAAAACTATCATGTGACGGAAAGAAAATATGTTTTGAAATCTCAAATATGTTGAACCACTGACGAGTGAGCTTTGCAGTGTGTGCAGGCACTCCGTACTGATAGAATGGTCAATTTTCGTTCACAAGACGTGATTGGGACTGGGGCAGCACCT</canonical>
            <polymorphic>ACAGGGTTGCAATCTGACGGGCTGGCCGGCGGGCCGGCCCGAGGGAAAAAACCAGGGCCCGGCCGGCCGGCAATTAATTAATATTTGAAAAAAAAGAAAAAAATAGCCACGAAATTTCCACACTGGCTCGACCGATTCTCTCACTAATTGTAGTGATTTTTCTAGTTAATTTTATGTTACTTTTCTATCTTTTTTGTTGGATTGGTTGATATGAGCTTTAATTTTCTCCCCCGGTTTCCATTTCTTTGTTTCCCCTTGTTCATTTATACGGTTTTTACATTGTTATGCTACTTGTTAAGAAATAAATTCAAATAATTCTTCAATAATTTCTGTTTTTTCTTAAATTCGAACGGGCCGAACCTGTTTTACCTGTCGGTCTACCTTGTATTCCAACAGATATTGGACCGATCTCAGTACGACCTGCCCTTGATCTTTGTTTTCTGAGATTTTCTAGAGCTCGAAAATATCACAGCAAAGATTGAGCGCAGGTCCACTGGGARCCAACAATCCTACTGTAAAATGCTATTCTGCTAAATATTCCTATCATGAATGGTCAGGTTACCAGTCGACCTGTGCTGCCTCTTTCTTTCGTGATATTTTTCACAGCGTAAAAATATCACAAGAACAGATCCAGCACAGGTCGTTTACCTGACATTTATTCTGCTATTTGACACAAAAGGAATGATAACAAATATACCCGTGTTAGACTTTTCTTGTGATATTTCTCACTGAGCGAAATATCACAGAACAGTTCAAGCACGGGTATCACACAGGATCTTGCCTTTTTTATTCGAATTGAATACTGGTGAGTTGGAGTAATTATGATTTTCAGGAAGATAATAAAGCTAAAAACTATCATGTGACGGAAAGAAAATATGTTTTGAAATCTCAAATATGTTGAACCACTGACGAGTGAGCTTTGCAGTGTGTGCAGGCACTCCGTACTGATAGAATGGTCAATTTTCGTTCACAAGACGTGATTGGGACTGGGGCAGCACCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>503 402 86 9</canonical_bands>
                <polymorphic_bands>512 402 86</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 441 57</canonical_bands>
                <polymorphic_bands>501 442 57</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>503 442 55</canonical_bands>
                <polymorphic_bands>945 55</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>500 297 86 50 34 19 9 5</canonical_bands>
                <polymorphic_bands>509 297 86 50 34 19 5</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGGWCCC</site>
                <isoschizomers>
                    <enzyme>SanDI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTAGAGCTCGAAAATATCAC</pcr_primer_p1>
		<pcr_primer_p2>ATTTGTTATCATTCCTTTTGTGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTCTAGAGCTCGAAAATATCACAGCAAAGATTGAGCGCAGGTCCACTGGGACCCAACAATCCTACTGTAAAATGCTATTCTGCTAAATATTCCTATCATGAATGGTCAGGTTACCAGTCGACCTGTGCTGCCTCTTTCTTTCGTGATATTTTTCACAGCGTAAAAATATCACAAGAACAGATCCAGCACAGGTCGTTTACCTGACATTTATTCTGCTATTTGACACAAAAGGAATGATAACAAAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTAGAGCTCGAAAATATCACAGCAAAGATTGAGCGCAGGTCCACTGGGARCCAACAATCCTACTGTAAAATGCTATTCTGCTAAATATTCCTATCATGAATGGTCAGGTTACCAGTCGACCTGTGCTGCCTCTTTCTTTCGTGATATTTTTCACAGCGTAAAAATATCACAAGAACAGATCCAGCACAGGTCGTTTACCTGACATTTATTCTGCTATTTGACACAAAAGGAATGATAACAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39212</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>271744</contig_pos>
        <strand></strand>
        <context>ggtcaactga[T/C]aaaatgttga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGCTCAATTATCTTGGTTCTCGGGAAAAGATGTCAAAAGTGGTCAACTGA</left_flank>
        <right_flank>AAAATGTTGATCATGCTATTGACAGTGTTTTGTCAGTTGACAGATTTTTT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGATTGTTGGGTCCCAGTGGACCTGCGCTCAATCTTTGCTGTGATATTTTCGAGCTCTAGAAAATCTCAGAAAACAAAGATCAAGGGCAGGTCGTACTGAGATCGGTCCAATATCTGTTGGAATACAAGGTAGATGCACAGGCAATAAATTCGGATTGTTGGGTGATTCATGACTTGATCCAATCTAGTGGATGAAAAACACAAGGCAGAAATAATGAAATGGCCGTTGAAACCCAGTTTTTATATGGACCAGAAGAGGCGGTGCTTATTCAAAAGTAATCGTTTTCTAGAATATGACAAAGACTTTGCTCCGCCCTTTTGATTCTGTGTCTACCGACTGTTTTTTACGGATTCCAAAAAATATACAATTTAATATAGATGTTCGAATTCATTGAATCGGTGTATACCGTATTTCCTCTAATAGAAGTCAACTCAAATTTTGACTTTGAGCTCAATTATCTTGGTTCTCGGGAAAAGATGTCAAAAGTGGTCAACTGATAAAATGTTGATCATGCTATTGACAGTGTTTTGTCAGTTGACAGATTTTTTATCTTCTCTACATGAATCGAAATAATTGAGCTCTATTAGAGGAAATATGGTATCTCAAATGTAACACTTTTAGGTATTGGGATTTGAGACCATATATGTAATAGAAAAATTTTAATTTCTTCGGTCACTCTTTTGCTTTTCATACGAAGTTTCTGAAAATGGGAATTCAGAGTTTCGAAAGTTAGATTACTGTAGCTAGCAAAACAATTTGTTGGAATGCAAAAATATCCGGATTTCATTCTATCTAACATTCCGGATTTCGATACCTGGATCAATCTAAATGTTGTTTTTGGATTCCGTGTTTCAGAATCTAAAATTTGAGATTCTGAAATTTTAAGACGCAAATACTGGAAAACTATAGGTTCCACACATTTTGTATTTGAAATTCGAGACAGAAAAAGAAACCTAAAATGAAAATATACGAAATACGAATTCTATGTTCTGAAATCT</canonical>
            <polymorphic>AGGATTGTTGGGTCCCAGTGGACCTGCGCTCAATCTTTGCTGTGATATTTTCGAGCTCTAGAAAATCTCAGAAAACAAAGATCAAGGGCAGGTCGTACTGAGATCGGTCCAATATCTGTTGGAATACAAGGTAGATGCACAGGCAATAAATTCGGATTGTTGGGTGATTCATGACTTGATCCAATCTAGTGGATGAAAAACACAAGGCAGAAATAATGAAATGGCCGTTGAAACCCAGTTTTTATATGGACCAGAAGAGGCGGTGCTTATTCAAAAGTAATCGTTTTCTAGAATATGACAAAGACTTTGCTCCGCCCTTTTGATTCTGTGTCTACCGACTGTTTTTTACGGATTCCAAAAAATATACAATTTAATATAGATGTTCGAATTCATTGAATCGGTGTATACCGTATTTCCTCTAATAGAAGTCAACTCAAATTTTGACTTTGAGCTCAATTATCTTGGTTCTCGGGAAAAGATGTCAAAAGTGGTCAACTGAYAAAATGTTGATCATGCTATTGACAGTGTTTTGTCAGTTGACAGATTTTTTATCTTCTCTACATGAATCGAAATAATTGAGCTCTATTAGAGGAAATATGGTATCTCAAATGTAACACTTTTAGGTATTGGGATTTGAGACCATATATGTAATAGAAAAATTTTAATTTCTTCGGTCACTCTTTTGCTTTTCATACGAAGTTTCTGAAAATGGGAATTCAGAGTTTCGAAAGTTAGATTACTGTAGCTAGCAAAACAATTTGTTGGAATGCAAAAATATCCGGATTTCATTCTATCTAACATTCCGGATTTCGATACCTGGATCAATCTAAATGTTGTTTTTGGATTCCGTGTTTCAGAATCTAAAATTTGAGATTCTGAAATTTTAAGACGCAAATACTGGAAAACTATAGGTTCCACACATTTTGTATTTGAAATTCGAGACAGAAAAAGAAACCTAAAATGAAAATATACGAAATACGAATTCTATGTTCTGAAATCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAATATAGATGTTCGAATTCATTG</pcr_primer_p1>
		<pcr_primer_p2>CATTTGAGATACCATATTTCCTC</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTAATATAGATGTTCGAATTCATTGAATCGGTGTATACCGTATTTCCTCTAATAGAAGTCAACTCAAATTTTGACTTTGAGCTCAATTATCTTGGTTCTCGGGAAAAGATGTCAAAAGTGGTCAACTGATAAAATGTTGATCATGCTATTGACAGTGTTTTGTCAGTTGACAGATTTTTTATCTTCTCTACATGAATCGAAATAATTGAGCTCTATTAGAGGAAATATGGTATCTCAAATG</canonical_amplicon>
		<polymorphic_amplicon>TTAATATAGATGTTCGAATTCATTGAATCGGTGTATACCGTATTTCCTCTAATAGAAGTCAACTCAAATTTTGACTTTGAGCTCAATTATCTTGGTTCTCGGGAAAAGATGTCAAAAGTGGTCAACTGAYAAAATGTTGATCATGCTATTGACAGTGTTTTGTCAGTTGACAGATTTTTTATCTTCTCTACATGAATCGAAATAATTGAGCTCTATTAGAGGAAATATGGTATCTCAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39213</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>271856</contig_pos>
        <strand>+</strand>
        <context>ATCTCAAATG[C/T]AACACTTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGAATCGAAATAATTGAGCTCTATTAGAGGAAATATGGTATCTCAAATG</left_flank>
        <right_flank>AACACTTTTAGGTATTGGGATTTGAGACCATATATGTAATAGAAAAATTT</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCTGTTGGAATACAAGGTAGATGCACAGGCAATAAATTCGGATTGTTGGGTGATTCATGACTTGATCCAATCTAGTGGATGAAAAACACAAGGCAGAAATAATGAAATGGCCGTTGAAACCCAGTTTTTATATGGACCAGAAGAGGCGGTGCTTATTCAAAAGTAATCGTTTTCTAGAATATGACAAAGACTTTGCTCCGCCCTTTTGATTCTGTGTCTACCGACTGTTTTTTACGGATTCCAAAAAATATACAATTTAATATAGATGTTCGAATTCATTGAATCGGTGTATACCGTATTTCCTCTAATAGAAGTCAACTCAAATTTTGACTTTGAGCTCAATTATCTTGGTTCTCGGGAAAAGATGTCAAAAGTGGTCAACTGATAAAATGTTGATCATGCTATTGACAGTGTTTTGTCAGTTGACAGATTTTTTATCTTCTCTACATGAATCGAAATAATTGAGCTCTATTAGAGGAAATATGGTATCTCAAATGTAACACTTTTAGGTATTGGGATTTGAGACCATATATGTAATAGAAAAATTTTAATTTCTTCGGTCACTCTTTTGCTTTTCATACGAAGTTTCTGAAAATGGGAATTCAGAGTTTCGAAAGTTAGATTACTGTAGCTAGCAAAACAATTTGTTGGAATGCAAAAATATCCGGATTTCATTCTATCTAACATTCCGGATTTCGATACCTGGATCAATCTAAATGTTGTTTTTGGATTCCGTGTTTCAGAATCTAAAATTTGAGATTCTGAAATTTTAAGACGCAAATACTGGAAAACTATAGGTTCCACACATTTTGTATTTGAAATTCGAGACAGAAAAAGAAACCTAAAATGAAAATATACGAAATACGAATTCTATGTTCTGAAATCTGAATTTGAATTTTTTTTCTGAAATGCAAACTATACAGCTTCAATGTTCATGGATTCGAAAAATATAAAATTCCATCATACATTTTCTCATCTTAGTCAGAACTAACCAGCCG</canonical>
            <polymorphic>TATCTGTTGGAATACAAGGTAGATGCACAGGCAATAAATTCGGATTGTTGGGTGATTCATGACTTGATCCAATCTAGTGGATGAAAAACACAAGGCAGAAATAATGAAATGGCCGTTGAAACCCAGTTTTTATATGGACCAGAAGAGGCGGTGCTTATTCAAAAGTAATCGTTTTCTAGAATATGACAAAGACTTTGCTCCGCCCTTTTGATTCTGTGTCTACCGACTGTTTTTTACGGATTCCAAAAAATATACAATTTAATATAGATGTTCGAATTCATTGAATCGGTGTATACCGTATTTCCTCTAATAGAAGTCAACTCAAATTTTGACTTTGAGCTCAATTATCTTGGTTCTCGGGAAAAGATGTCAAAAGTGGTCAACTGATAAAATGTTGATCATGCTATTGACAGTGTTTTGTCAGTTGACAGATTTTTTATCTTCTCTACATGAATCGAAATAATTGAGCTCTATTAGAGGAAATATGGTATCTCAAATGYAACACTTTTAGGTATTGGGATTTGAGACCATATATGTAATAGAAAAATTTTAATTTCTTCGGTCACTCTTTTGCTTTTCATACGAAGTTTCTGAAAATGGGAATTCAGAGTTTCGAAAGTTAGATTACTGTAGCTAGCAAAACAATTTGTTGGAATGCAAAAATATCCGGATTTCATTCTATCTAACATTCCGGATTTCGATACCTGGATCAATCTAAATGTTGTTTTTGGATTCCGTGTTTCAGAATCTAAAATTTGAGATTCTGAAATTTTAAGACGCAAATACTGGAAAACTATAGGTTCCACACATTTTGTATTTGAAATTCGAGACAGAAAAAGAAACCTAAAATGAAAATATACGAAATACGAATTCTATGTTCTGAAATCTGAATTTGAATTTTTTTTCTGAAATGCAAACTATACAGCTTCAATGTTCATGGATTCGAAAAATATAAAATTCCATCATACATTTTCTCATCTTAGTCAGAACTAACCAGCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>498 439 63</canonical_bands>
                <polymorphic_bands>561 439</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAATATAGATGTTCGAATTCATTG</pcr_primer_p1>
		<pcr_primer_p2>AGAGTGACCGAAGAAATTAAAA</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>TTAATATAGATGTTCGAATTCATTGAATCGGTGTATACCGTATTTCCTCTAATAGAAGTCAACTCAAATTTTGACTTTGAGCTCAATTATCTTGGTTCTCGGGAAAAGATGTCAAAAGTGGTCAACTGATAAAATGTTGATCATGCTATTGACAGTGTTTTGTCAGTTGACAGATTTTTTATCTTCTCTACATGAATCGAAATAATTGAGCTCTATTAGAGGAAATATGGTATCTCAAATGTAACACTTTTAGGTATTGGGATTTGAGACCATATATGTAATAGAAAAATTTTAATTTCTTCGGTCACTCT</canonical_amplicon>
		<polymorphic_amplicon>TTAATATAGATGTTCGAATTCATTGAATCGGTGTATACCGTATTTCCTCTAATAGAAGTCAACTCAAATTTTGACTTTGAGCTCAATTATCTTGGTTCTCGGGAAAAGATGTCAAAAGTGGTCAACTGATAAAATGTTGATCATGCTATTGACAGTGTTTTGTCAGTTGACAGATTTTTTATCTTCTCTACATGAATCGAAATAATTGAGCTCTATTAGAGGAAATATGGTATCTCAAATGYAACACTTTTAGGTATTGGGATTTGAGACCATATATGTAATAGAAAAATTTTAATTTCTTCGGTCACTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39214</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>273682</contig_pos>
        <strand>+</strand>
        <context>TATTTTTCTG[G/T]ACTCTTTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TATTTTCAATATTTGAAAACTGGATCATGTAAAGACGATATATTTTTCTG</left_flank>
        <right_flank>ACTCTTTTCTATTATTATCCGCTATTTTTACGTTCCATTTTCTCAACTTT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGGCAGGCAATTTTCAAAGTCTTTGAATCTTGATGCTGCTCACAATAGTTCTCAAAAAATTCGTGGTTTTGGGAGCCGGAAAAGCCCCGTCTTCCTGCAAAATTTCGATTTGTATCCTAGCAGGTGTCCAAGTTACCCGCTCTCCATTTTTTTCCAAAGTTCTAGTGCCACTTTTGAGTATACTTTCTCTTTGTGTTTCTTTCGAGTCTCTTTTCTTTGTCTGAAAAGCCGAATGGAGCTATTTAAAGCTTCAAGAATCCACGTTACTAGAGGAACAGAAAATTAATAGAACCGCCTGGAAAAGTAAACGACATCAGTTAACATTGACGGAGTGTCGTTAAGACGATGTTGAAGCCAAACTGATGTGAATTTTTTACTCCTAAATCACAATCCCGTTTTCAAGATCGAAACATTTTTCGGAACATTTTTTTTTCAGCGGTTTTGTGAATATTTTCAATATTTGAAAACTGGATCATGTAAAGACGATATATTTTTCTGTACTCTTTTCTATTATTATCCGCTATTTTTACGTTCCATTTTCTCAACTTTCTTGAGAACGTCACTCATTATAACCCTCTTCCTCGATCTGCTCATTTTTCTTCATTTTTCTGCTCTTTTCTTCTTATTATCACCAATATAGAAGCCATAGCTGCTTGAGACTGCAGAGATATGAAGATGTCGTCTCGGCCGGCTCTCTAGCGCCCCGGTGCCTGTGCCAGGGGGTGCCAGGTGGAACCGCCGGCAGAGGAAGAGCAGCTAGACGAAAAATCTCCGTCTCTTCATGCTCGAATGATGTTCTCTAACGCTGCACATAGTAATATGTTCTCGTGAAAAAGAGGGATTAGAGAAGATAAGCGGCAACAGAGATCGCAAGTTGAATATTGGCAAAAGAGCAATATCTGAGATTTTAATGACCTAAGTAATTTGAAAACTAAATTTGATGAGCTTCTGAAACTTAGAGAATAGAATTAGGGTCACAGTGAACATACTTTTAAAAGT</canonical>
            <polymorphic>AAGGCAGGCAATTTTCAAAGTCTTTGAATCTTGATGCTGCTCACAATAGTTCTCAAAAAATTCGTGGTTTTGGGAGCCGGAAAAGCCCCGTCTTCCTGCAAAATTTCGATTTGTATCCTAGCAGGTGTCCAAGTTACCCGCTCTCCATTTTTTTCCAAAGTTCTAGTGCCACTTTTGAGTATACTTTCTCTTTGTGTTTCTTTCGAGTCTCTTTTCTTTGTCTGAAAAGCCGAATGGAGCTATTTAAAGCTTCAAGAATCCACGTTACTAGAGGAACAGAAAATTAATAGAACCGCCTGGAAAAGTAAACGACATCAGTTAACATTGACGGAGTGTCGTTAAGACGATGTTGAAGCCAAACTGATGTGAATTTTTTACTCCTAAATCACAATCCCGTTTTCAAGATCGAAACATTTTTCGGAACATTTTTTTTTCAGCGGTTTTGTGAATATTTTCAATATTTGAAAACTGGATCATGTAAAGACGATATATTTTTCTGKACTCTTTTCTATTATTATCCGCTATTTTTACGTTCCATTTTCTCAACTTTCTTGAGAACGTCACTCATTATAACCCTCTTCCTCGATCTGCTCATTTTTCTTCATTTTTCTGCTCTTTTCTTCTTATTATCACCAATATAGAAGCCATAGCTGCTTGAGACTGCAGAGATATGAAGATGTCGTCTCGGCCGGCTCTCTAGCGCCCCGGTGCCTGTGCCAGGGGGTGCCAGGTGGAACCGCCGGCAGAGGAAGAGCAGCTAGACGAAAAATCTCCGTCTCTTCATGCTCGAATGATGTTCTCTAACGCTGCACATAGTAATATGTTCTCGTGAAAAAGAGGGATTAGAGAAGATAAGCGGCAACAGAGATCGCAAGTTGAATATTGGCAAAAGAGCAATATCTGAGATTTTAATGACCTAAGTAATTTGAAAACTAAATTTGATGAGCTTCTGAAACTTAGAGAATAGAATTAGGGTCACAGTGAACATACTTTTAAAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTAAACGACATCAGTTAACATTG</pcr_primer_p1>
		<pcr_primer_p2>AAGAAAGTTGAGAAAATGGAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTAAACGACATCAGTTAACATTGACGGAGTGTCGTTAAGACGATGTTGAAGCCAAACTGATGTGAATTTTTTACTCCTAAATCACAATCCCGTTTTCAAGATCGAAACATTTTTCGGAACATTTTTTTTTCAGCGGTTTTGTGAATATTTTCAATATTTGAAAACTGGATCATGTAAAGACGATATATTTTTCTGTACTCTTTTCTATTATTATCCGCTATTTTTACGTTCCATTTTCTCAACTTTCTT</canonical_amplicon>
		<polymorphic_amplicon>AGTAAACGACATCAGTTAACATTGACGGAGTGTCGTTAAGACGATGTTGAAGCCAAACTGATGTGAATTTTTTACTCCTAAATCACAATCCCGTTTTCAAGATCGAAACATTTTTCGGAACATTTTTTTTTCAGCGGTTTTGTGAATATTTTCAATATTTGAAAACTGGATCATGTAAAGACGATATATTTTTCTGKACTCTTTTCTATTATTATCCGCTATTTTTACGTTCCATTTTCTCAACTTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39215</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>361664</contig_pos>
        <strand>+</strand>
        <context>GTTCATTTAT[C/T]ATAAACGGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGTTGGACCAACACGCGGAGATTACGGTATTCCTTTTCTGTTCATTTAT</left_flank>
        <right_flank>ATAAACGGATCTAACCTCCTTTATTCCATAACTTGACAGCCGAAAAACTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGAGAGGCAAAGGATGGGTACGGTATATCGCCATATCGTCCCAAACTCAAAACAGTGTTCGAAAAAGGTTAACCTATACTGACCTTATAAGGCTCCAAATATATAATTTCATACTAGAAAAGAGAAGGAACAGTCCAGAGTTATTGCAAACATAGGGATTTTAAAGAACAAAGAGAAAAAATATATCTAAAAGCAATCAGTTTCAACTCACGCCTCGTTCAGGAAGTTTGAAGCTTGCTCCTAGCTAATGCTACTGTCGTAGAATACAGAATGACCACCCCCTCCGAGAAAAGGACGAGCAGAGAAGAATCTATTGTGGCGATGGACTTATAAGTGTGAGAGGCACGTTGACACCACATCGGAAGGGAAGGAGCACACTCTTCTCCTCGCCTCCTGTATCTACGTCAGAGGGCAATAAGCGAGGAATAATCGGGATTGCGCAACTGACCAGTTGGACCAACACGCGGAGATTACGGTATTCCTTTTCTGTTCATTTATCATAAACGGATCTAACCTCCTTTATTCCATAACTTGACAGCCGAAAAACTGGGAAAATGAAATTCTGCAAACCCAGTTTCAAATTTGAATATTTCTGCTTTGCACCAGTACGCATTTGTCAGTAGAGCGCGTTTGCTTAAAGACGCGAGTTCAGCCATTCAGCTCATGTGCATGTATAGAGATCCCCATCAATTTTTTAGGAAGAAGAGAGGGGATGTCTCGACAGATTGTTCTTGTGACAAAAGAATCTAAAAAAAGAAGAAGGGCAAGTAAAATGACTGGAGTGACAGAAGATGGATTGACAGCCAGCACGAAAATTGGCTTTTTTAGAGGATTCATACTAATTAACTTTCGCGTGTCCATCTTGGATTTCAGCATAAGTTCCTGCACGACTTCACTAATTCGTGTAATTTCTTAATTGAGGGCAAAATTCATATACCGTAGTCTACCCTACGTTTAAAATTTGAGCTCAATCATCTGATTTTACGGGGTTTCTTGTAA</canonical>
            <polymorphic>CGGAGAGGCAAAGGATGGGTACGGTATATCGCCATATCGTCCCAAACTCAAAACAGTGTTCGAAAAAGGTTAACCTATACTGACCTTATAAGGCTCCAAATATATAATTTCATACTAGAAAAGAGAAGGAACAGTCCAGAGTTATTGCAAACATAGGGATTTTAAAGAACAAAGAGAAAAAATATATCTAAAAGCAATCAGTTTCAACTCACGCCTCGTTCAGGAAGTTTGAAGCTTGCTCCTAGCTAATGCTACTGTCGTAGAATACAGAATGACCACCCCCTCCGAGAAAAGGACGAGCAGAGAAGAATCTATTGTGGCGATGGACTTATAAGTGTGAGAGGCACGTTGACACCACATCGGAAGGGAAGGAGCACACTCTTCTCCTCGCCTCCTGTATCTACGTCAGAGGGCAATAAGCGAGGAATAATCGGGATTGCGCAACTGACCAGTTGGACCAACACGCGGAGATTACGGTATTCCTTTTCTGTTCATTTATYATAAACGGATCTAACCTCCTTTATTCCATAACTTGACAGCCGAAAAACTGGGAAAATGAAATTCTGCAAACCCAGTTTCAAATTTGAATATTTCTGCTTTGCACCAGTACGCATTTGTCAGTAGAGCGCGTTTGCTTAAAGACGCGAGTTCAGCCATTCAGCTCATGTGCATGTATAGAGATCCCCATCAATTTTTTAGGAAGAAGAGAGGGGATGTCTCGACAGATTGTTCTTGTGACAAAAGAATCTAAAAAAAGAAGAAGGGCAAGTAAAATGACTGGAGTGACAGAAGATGGATTGACAGCCAGCACGAAAATTGGCTTTTTTAGAGGATTCATACTAATTAACTTTCGCGTGTCCATCTTGGATTTCAGCATAAGTTCCTGCACGACTTCACTAATTCGTGTAATTTCTTAATTGAGGGCAAAATTCATATACCGTAGTCTACCCTACGTTTAAAATTTGAGCTCAATCATCTGATTTTACGGGGTTTCTTGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATTGTGGCGATGGACTTAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTCATTTTCCCAGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATTGTGGCGATGGACTTATAAGTGTGAGAGGCACGTTGACACCACATCGGAAGGGAAGGAGCACACTCTTCTCCTCGCCTCCTGTATCTACGTCAGAGGGCAATAAGCGAGGAATAATCGGGATTGCGCAACTGACCAGTTGGACCAACACGCGGAGATTACGGTATTCCTTTTCTGTTCATTTATCATAAACGGATCTAACCTCCTTTATTCCATAACTTGACAGCCGAAAAACTGGGAAAATGAAAT</canonical_amplicon>
		<polymorphic_amplicon>TATTGTGGCGATGGACTTATAAGTGTGAGAGGCACGTTGACACCACATCGGAAGGGAAGGAGCACACTCTTCTCCTCGCCTCCTGTATCTACGTCAGAGGGCAATAAGCGAGGAATAATCGGGATTGCGCAACTGACCAGTTGGACCAACACGCGGAGATTACGGTATTCCTTTTCTGTTCATTTATYATAAACGGATCTAACCTCCTTTATTCCATAACTTGACAGCCGAAAAACTGGGAAAATGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39216</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>379695</contig_pos>
        <strand></strand>
        <context>ACGAATCGCT[T/C]AAGACCAAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCAGACAGACAAGAAGAACCAGAGAGAAGGGTCGCTGCTCACGAATCGCT</left_flank>
        <right_flank>AAGACCAAGACGGTTTCTTCACAGAAAGAGGGTCTACCACACTCGAGGAA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAAGGGCAAATTGAAGATGAAGGTGAAGAAGAAATCGATGTGGTGAATGAAACACCAGCCCGCTCGCCCGTCCCTTCCCCTGATGTCTCTTCTGTTGAAGAGCAGGTGAAGATTCAAAAGCCCCGAATGGATGACCTACAAGGAGACAGAGATTCAGCAGGTTTCGCCCCACAAATAAATCTGAAAAAATCCGAAGAGCCAGCCAGGAAAGCAGTTAACCCAGGAGAACTGACAAGTCATCCAGAACAGTCTCCTTCTCGTCTCATTCAAAATGAGGATATGACCAAAGTTTTACTAGCACTTGTGCAACAGCGAAACCAAGCAGTTGATCAGAAAAAACCTGTTAAAGATGCTCATAATCCAGAAAAATTGCTTTTGCCTTCAAATCTCCAGCAAATCAAGGAACAAGTAGAAAAGAAGGAAATTGCTGTTATCGTACAAAAAAGGGCAGACAGACAAGAAGAACCAGAGAGAAGGGTCGCTGCTCACGAATCGCTTAAGACCAAGACGGTTTCTTCACAGAAAGAGGGTCTACCACACTCGAGGAACTTTGATAAAAAGAAGAAACTGGCTCAAACTCCAGATTCAGATGAGGAAAGTGAGGAAGATGAGCGTGGCTCATCATCCCGTAAACGATGGTCCAGTTCGTCATCCGATTCTTTGTATGAAAAAGTGAAAAAAAACGAAGAAGGAAGAGTGTCGGTGTTACTCAAAATATTCGAAAGCCCATCAGACCGAGAACAGCGAAAAAAAGCCACCAGTTGTGGATGCAACATCATCTGAAGAAGATCATCATTCTAAAGAAGACAATGAAGATCGGGTGAGTTTTCGGATTTTTGAACCTCTAGTGCTTGAATATAGAATATTCAAACCCAAATTTGAATATTATTTCAGTCGAACTGGTGCCCCTCATTCAATCCCAACTGTCTGATCGGAAATGGGACGACTGATGATCTGTGGGTAAGTAAAGATCTACAAAACCTAAACTATAGCGGAAC</canonical>
            <polymorphic>CTGAAGGGCAAATTGAAGATGAAGGTGAAGAAGAAATCGATGTGGTGAATGAAACACCAGCCCGCTCGCCCGTCCCTTCCCCTGATGTCTCTTCTGTTGAAGAGCAGGTGAAGATTCAAAAGCCCCGAATGGATGACCTACAAGGAGACAGAGATTCAGCAGGTTTCGCCCCACAAATAAATCTGAAAAAATCCGAAGAGCCAGCCAGGAAAGCAGTTAACCCAGGAGAACTGACAAGTCATCCAGAACAGTCTCCTTCTCGTCTCATTCAAAATGAGGATATGACCAAAGTTTTACTAGCACTTGTGCAACAGCGAAACCAAGCAGTTGATCAGAAAAAACCTGTTAAAGATGCTCATAATCCAGAAAAATTGCTTTTGCCTTCAAATCTCCAGCAAATCAAGGAACAAGTAGAAAAGAAGGAAATTGCTGTTATCGTACAAAAAAGGGCAGACAGACAAGAAGAACCAGAGAGAAGGGTCGCTGCTCACGAATCGCTYAAGACCAAGACGGTTTCTTCACAGAAAGAGGGTCTACCACACTCGAGGAACTTTGATAAAAAGAAGAAACTGGCTCAAACTCCAGATTCAGATGAGGAAAGTGAGGAAGATGAGCGTGGCTCATCATCCCGTAAACGATGGTCCAGTTCGTCATCCGATTCTTTGTATGAAAAAGTGAAAAAAAACGAAGAAGGAAGAGTGTCGGTGTTACTCAAAATATTCGAAAGCCCATCAGACCGAGAACAGCGAAAAAAAGCCACCAGTTGTGGATGCAACATCATCTGAAGAAGATCATCATTCTAAAGAAGACAATGAAGATCGGGTGAGTTTTCGGATTTTTGAACCTCTAGTGCTTGAATATAGAATATTCAAACCCAAATTTGAATATTATTTCAGTCGAACTGGTGCCCCTCATTCAATCCCAACTGTCTGATCGGAAATGGGACGACTGATGATCTGTGGGTAAGTAAAGATCTACAAAACCTAAACTATAGCGGAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTTAAG</site>
                <isoschizomers>
                    <enzyme>AflII</enzyme>
                    <enzyme>BfrI</enzyme>
                    <enzyme>BspTI</enzyme>
                    <enzyme>Bst98I</enzyme>
                    <enzyme>MspCI</enzyme>
                    <enzyme>Vha464I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>501 217 153 129</canonical_bands>
                <polymorphic_bands>654 217 129</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>498 458 44</canonical_bands>
                <polymorphic_bands>542 458</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAACCTGTTAAAGATGCTCATA</pcr_primer_p1>
		<pcr_primer_p2>GAGTTTGAGCCAGTTTCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AAAACCTGTTAAAGATGCTCATAATCCAGAAAAATTGCTTTTGCCTTCAAATCTCCAGCAAATCAAGGAACAAGTAGAAAAGAAGGAAATTGCTGTTATCGTACAAAAAAGGGCAGACAGACAAGAAGAACCAGAGAGAAGGGTCGCTGCTCACGAATCGCTTAAGACCAAGACGGTTTCTTCACAGAAAGAGGGTCTACCACACTCGAGGAACTTTGATAAAAAGAAGAAACTGGCTCAAACTC</canonical_amplicon>
		<polymorphic_amplicon>AAAACCTGTTAAAGATGCTCATAATCCAGAAAAATTGCTTTTGCCTTCAAATCTCCAGCAAATCAAGGAACAAGTAGAAAAGAAGGAAATTGCTGTTATCGTACAAAAAAGGGCAGACAGACAAGAAGAACCAGAGAGAAGGGTCGCTGCTCACGAATCGCTYAAGACCAAGACGGTTTCTTCACAGAAAGAGGGTCTACCACACTCGAGGAACTTTGATAAAAAGAAGAAACTGGCTCAAACTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39217</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>394417</contig_pos>
        <strand>+</strand>
        <context>GCAAAGAGAA[C/T]TGCATTAGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAATTTTTTCAGGCAGTCGAAGATTGTCAGTGCTCACTTGGCAAAGAGAA</left_flank>
        <right_flank>TGCATTAGAGACACATTGTTTCCAAACGAGGAGATTCTGAACTGGGTATG</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAAAAGAATTATTTATGGACAACGAAGGCTCGGACATTGACAACATGAAAAACATACAACTCGACTGTTTTGTAGCCGAGATGAACTGGAGACCGCTTCGAAAAACTGCCGCACGCCAACAAAGAGATAGTCTCTTGTTCTTTTCGTCTGCTCCAAAAAGGCTGAAACTATCTCAGAATATCAAGAAAGAAAAGAAAGACGGAATCACTAAGTATTGTGTTCCATCTTCGCTAAAGGTTAGTATAAATAGGACTAGTTGTTCTAGGCTGAAATGAGTAAAACCACTATTCAAAACAAAAGTTTTTATAACTCTAATTTTTCAACAAAATATATTACAGAAACATAAAAAACCAACAACTCCAGCAACTGAGAAAAATAAATGCTGCAAAGAACTGAAAAAAGAAGTGACCGATGTGAGACGAAAAACATATTTGAGAGAATTCCAATCAATTTTTTCAGGCAGTCGAAGATTGTCAGTGCTCACTTGGCAAAGAGAATTGCATTAGAGACACATTGTTTCCAAACGAGGAGATTCTGAACTGGGTATGTTGAGTGTAATATATTAGTTTTTGAAGAATTAGAACTCTTGGTCCAGTAGGGTACAGTATGTAAAAATGGTCCAGTAGGAAAACTAGACTAGGAATAAAAACTAGGAGAACTAGAACGCACAAGTTTGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTAAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTG</canonical>
            <polymorphic>GAAAAAAGAATTATTTATGGACAACGAAGGCTCGGACATTGACAACATGAAAAACATACAACTCGACTGTTTTGTAGCCGAGATGAACTGGAGACCGCTTCGAAAAACTGCCGCACGCCAACAAAGAGATAGTCTCTTGTTCTTTTCGTCTGCTCCAAAAAGGCTGAAACTATCTCAGAATATCAAGAAAGAAAAGAAAGACGGAATCACTAAGTATTGTGTTCCATCTTCGCTAAAGGTTAGTATAAATAGGACTAGTTGTTCTAGGCTGAAATGAGTAAAACCACTATTCAAAACAAAAGTTTTTATAACTCTAATTTTTCAACAAAATATATTACAGAAACATAAAAAACCAACAACTCCAGCAACTGAGAAAAATAAATGCTGCAAAGAACTGAAAAAAGAAGTGACCGATGTGAGACGAAAAACATATTTGAGAGAATTCCAATCAATTTTTTCAGGCAGTCGAAGATTGTCAGTGCTCACTTGGCAAAGAGAAYTGCATTAGAGACACATTGTTTCCAAACGAGGAGATTCTGAACTGGGTATGTTGAGTGTAATATATTAGTTTTTGAAGAATTAGAACTCTTGGTCCAGTAGGGTACAGTATGTAAAAATGGTCCAGTAGGAAAACTAGACTAGGAATAAAAACTAGGAGAACTAGAACGCACAAGTTTGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTAAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>307 170 125 109 80 72 55 47 17 10 8</canonical_bands>
                <polymorphic_bands>307 170 127 125 109 72 55 17 10 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATAAATGCTGCAAAGAAC</pcr_primer_p1>
		<pcr_primer_p2>GGACCATTTTTACATACTGTACC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAAATAAATGCTGCAAAGAACTGAAAAAAGAAGTGACCGATGTGAGACGAAAAACATATTTGAGAGAATTCCAATCAATTTTTTCAGGCAGTCGAAGATTGTCAGTGCTCACTTGGCAAAGAGAATTGCATTAGAGACACATTGTTTCCAAACGAGGAGATTCTGAACTGGGTATGTTGAGTGTAATATATTAGTTTTTGAAGAATTAGAACTCTTGGTCCAGTAGGGTACAGTATGTAAAAATGGTCC</canonical_amplicon>
		<polymorphic_amplicon>AAAAATAAATGCTGCAAAGAACTGAAAAAAGAAGTGACCGATGTGAGACGAAAAACATATTTGAGAGAATTCCAATCAATTTTTTCAGGCAGTCGAAGATTGTCAGTGCTCACTTGGCAAAGAGAAYTGCATTAGAGACACATTGTTTCCAAACGAGGAGATTCTGAACTGGGTATGTTGAGTGTAATATATTAGTTTTTGAAGAATTAGAACTCTTGGTCCAGTAGGGTACAGTATGTAAAAATGGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39218</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>394511</contig_pos>
        <strand>+</strand>
        <context>AACTCTTGGT[C/T]CAGTAGGGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGTATGTTGAGTGTAATATATTAGTTTTTGAAGAATTAGAACTCTTGGT</left_flank>
        <right_flank>CAGTAGGGTACAGTATGTAAAAATGGTCCAGTAGGAAAACTAGACTAGGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGCTTCGAAAAACTGCCGCACGCCAACAAAGAGATAGTCTCTTGTTCTTTTCGTCTGCTCCAAAAAGGCTGAAACTATCTCAGAATATCAAGAAAGAAAAGAAAGACGGAATCACTAAGTATTGTGTTCCATCTTCGCTAAAGGTTAGTATAAATAGGACTAGTTGTTCTAGGCTGAAATGAGTAAAACCACTATTCAAAACAAAAGTTTTTATAACTCTAATTTTTCAACAAAATATATTACAGAAACATAAAAAACCAACAACTCCAGCAACTGAGAAAAATAAATGCTGCAAAGAACTGAAAAAAGAAGTGACCGATGTGAGACGAAAAACATATTTGAGAGAATTCCAATCAATTTTTTCAGGCAGTCGAAGATTGTCAGTGCTCACTTGGCAAAGAGAATTGCATTAGAGACACATTGTTTCCAAACGAGGAGATTCTGAACTGGGTATGTTGAGTGTAATATATTAGTTTTTGAAGAATTAGAACTCTTGGTCCAGTAGGGTACAGTATGTAAAAATGGTCCAGTAGGAAAACTAGACTAGGAATAAAAACTAGGAGAACTAGAACGCACAAGTTTGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTAAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGAAGAGGAAGTTCTACTGCTGTTCACGCTGGGGACATGC</canonical>
            <polymorphic>CCGCTTCGAAAAACTGCCGCACGCCAACAAAGAGATAGTCTCTTGTTCTTTTCGTCTGCTCCAAAAAGGCTGAAACTATCTCAGAATATCAAGAAAGAAAAGAAAGACGGAATCACTAAGTATTGTGTTCCATCTTCGCTAAAGGTTAGTATAAATAGGACTAGTTGTTCTAGGCTGAAATGAGTAAAACCACTATTCAAAACAAAAGTTTTTATAACTCTAATTTTTCAACAAAATATATTACAGAAACATAAAAAACCAACAACTCCAGCAACTGAGAAAAATAAATGCTGCAAAGAACTGAAAAAAGAAGTGACCGATGTGAGACGAAAAACATATTTGAGAGAATTCCAATCAATTTTTTCAGGCAGTCGAAGATTGTCAGTGCTCACTTGGCAAAGAGAATTGCATTAGAGACACATTGTTTCCAAACGAGGAGATTCTGAACTGGGTATGTTGAGTGTAATATATTAGTTTTTGAAGAATTAGAACTCTTGGTYCAGTAGGGTACAGTATGTAAAAATGGTCCAGTAGGAAAACTAGACTAGGAATAAAAACTAGGAGAACTAGAACGCACAAGTTTGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTAAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGAAGAGGAAGTTCTACTGCTGTTCACGCTGGGGACATGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>497 475 28</canonical_bands>
                <polymorphic_bands>525 475</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>497 475 28</canonical_bands>
                <polymorphic_bands>525 475</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGAGACGAAAAACATATTTGAG</pcr_primer_p1>
		<pcr_primer_p2>AGTTCTCCTAGTTTTTATTCCTAGTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTGAGACGAAAAACATATTTGAGAGAATTCCAATCAATTTTTTCAGGCAGTCGAAGATTGTCAGTGCTCACTTGGCAAAGAGAATTGCATTAGAGACACATTGTTTCCAAACGAGGAGATTCTGAACTGGGTATGTTGAGTGTAATATATTAGTTTTTGAAGAATTAGAACTCTTGGTCCAGTAGGGTACAGTATGTAAAAATGGTCCAGTAGGAAAACTAGACTAGGAATAAAAACTAGGAGAACT</canonical_amplicon>
		<polymorphic_amplicon>GTGAGACGAAAAACATATTTGAGAGAATTCCAATCAATTTTTTCAGGCAGTCGAAGATTGTCAGTGCTCACTTGGCAAAGAGAATTGCATTAGAGACACATTGTTTCCAAACGAGGAGATTCTGAACTGGGTATGTTGAGTGTAATATATTAGTTTTTGAAGAATTAGAACTCTTGGTYCAGTAGGGTACAGTATGTAAAAATGGTCCAGTAGGAAAACTAGACTAGGAATAAAAACTAGGAGAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39219</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>394552</contig_pos>
        <strand>+</strand>
        <context>GTAGGAAAAC[G/T]AGACTAGGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTCTTGGTCCAGTAGGGTACAGTATGTAAAAATGGTCCAGTAGGAAAAC</left_flank>
        <right_flank>AGACTAGGAATAAAAACTAGGAGAACTAGAACGCACAAGTTTGATTTTGT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTGTTCTTTTCGTCTGCTCCAAAAAGGCTGAAACTATCTCAGAATATCAAGAAAGAAAAGAAAGACGGAATCACTAAGTATTGTGTTCCATCTTCGCTAAAGGTTAGTATAAATAGGACTAGTTGTTCTAGGCTGAAATGAGTAAAACCACTATTCAAAACAAAAGTTTTTATAACTCTAATTTTTCAACAAAATATATTACAGAAACATAAAAAACCAACAACTCCAGCAACTGAGAAAAATAAATGCTGCAAAGAACTGAAAAAAGAAGTGACCGATGTGAGACGAAAAACATATTTGAGAGAATTCCAATCAATTTTTTCAGGCAGTCGAAGATTGTCAGTGCTCACTTGGCAAAGAGAATTGCATTAGAGACACATTGTTTCCAAACGAGGAGATTCTGAACTGGGTATGTTGAGTGTAATATATTAGTTTTTGAAGAATTAGAACTCTTGGTCCAGTAGGGTACAGTATGTAAAAATGGTCCAGTAGGAAAACTAGACTAGGAATAAAAACTAGGAGAACTAGAACGCACAAGTTTGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTAAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGAAGAGGAAGTTCTACTGCTGTTCACGCTGGGGACATGCCAATGCAAAGAAAGCAAAGGCCGGAATTTTTTCCAAGCAAT</canonical>
            <polymorphic>CTTGTTCTTTTCGTCTGCTCCAAAAAGGCTGAAACTATCTCAGAATATCAAGAAAGAAAAGAAAGACGGAATCACTAAGTATTGTGTTCCATCTTCGCTAAAGGTTAGTATAAATAGGACTAGTTGTTCTAGGCTGAAATGAGTAAAACCACTATTCAAAACAAAAGTTTTTATAACTCTAATTTTTCAACAAAATATATTACAGAAACATAAAAAACCAACAACTCCAGCAACTGAGAAAAATAAATGCTGCAAAGAACTGAAAAAAGAAGTGACCGATGTGAGACGAAAAACATATTTGAGAGAATTCCAATCAATTTTTTCAGGCAGTCGAAGATTGTCAGTGCTCACTTGGCAAAGAGAATTGCATTAGAGACACATTGTTTCCAAACGAGGAGATTCTGAACTGGGTATGTTGAGTGTAATATATTAGTTTTTGAAGAATTAGAACTCTTGGTCCAGTAGGGTACAGTATGTAAAAATGGTCCAGTAGGAAAACKAGACTAGGAATAAAAACTAGGAGAACTAGAACGCACAAGTTTGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTAAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGAAGAGGAAGTTCTACTGCTGTTCACGCTGGGGACATGCCAATGCAAAGAAAGCAAAGGCCGGAATTTTTTCCAAGCAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>446 370 120 28 13 9 9 5</canonical_bands>
                <polymorphic_bands>446 375 120 28 13 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGAGAATTCCAATCAATTTT</pcr_primer_p1>
		<pcr_primer_p2>TAGTGAACAAAATCAAACTTGTG</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TGAGAGAATTCCAATCAATTTTTTCAGGCAGTCGAAGATTGTCAGTGCTCACTTGGCAAAGAGAATTGCATTAGAGACACATTGTTTCCAAACGAGGAGATTCTGAACTGGGTATGTTGAGTGTAATATATTAGTTTTTGAAGAATTAGAACTCTTGGTCCAGTAGGGTACAGTATGTAAAAATGGTCCAGTAGGAAAACTAGACTAGGAATAAAAACTAGGAGAACTAGAACGCACAAGTTTGATTTTGTTCACTA</canonical_amplicon>
		<polymorphic_amplicon>TGAGAGAATTCCAATCAATTTTTTCAGGCAGTCGAAGATTGTCAGTGCTCACTTGGCAAAGAGAATTGCATTAGAGACACATTGTTTCCAAACGAGGAGATTCTGAACTGGGTATGTTGAGTGTAATATATTAGTTTTTGAAGAATTAGAACTCTTGGTCCAGTAGGGTACAGTATGTAAAAATGGTCCAGTAGGAAAACKAGACTAGGAATAAAAACTAGGAGAACTAGAACGCACAAGTTTGATTTTGTTCACTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39220</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>394585</contig_pos>
        <strand>+</strand>
        <context>GAACTAGAAC[G/T]CACAAGTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGGTCCAGTAGGAAAACTAGACTAGGAATAAAAACTAGGAGAACTAGAAC</left_flank>
        <right_flank>CACAAGTTTGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTATCTCAGAATATCAAGAAAGAAAAGAAAGACGGAATCACTAAGTATTGTGTTCCATCTTCGCTAAAGGTTAGTATAAATAGGACTAGTTGTTCTAGGCTGAAATGAGTAAAACCACTATTCAAAACAAAAGTTTTTATAACTCTAATTTTTCAACAAAATATATTACAGAAACATAAAAAACCAACAACTCCAGCAACTGAGAAAAATAAATGCTGCAAAGAACTGAAAAAAGAAGTGACCGATGTGAGACGAAAAACATATTTGAGAGAATTCCAATCAATTTTTTCAGGCAGTCGAAGATTGTCAGTGCTCACTTGGCAAAGAGAATTGCATTAGAGACACATTGTTTCCAAACGAGGAGATTCTGAACTGGGTATGTTGAGTGTAATATATTAGTTTTTGAAGAATTAGAACTCTTGGTCCAGTAGGGTACAGTATGTAAAAATGGTCCAGTAGGAAAACTAGACTAGGAATAAAAACTAGGAGAACTAGAACGCACAAGTTTGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTAAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGAAGAGGAAGTTCTACTGCTGTTCACGCTGGGGACATGCCAATGCAAAGAAAGCAAAGGCCGGAATTTTTTCCAAGCAATTATGCAACAAATGAAAAATTTACACCTTACATA</canonical>
            <polymorphic>ACTATCTCAGAATATCAAGAAAGAAAAGAAAGACGGAATCACTAAGTATTGTGTTCCATCTTCGCTAAAGGTTAGTATAAATAGGACTAGTTGTTCTAGGCTGAAATGAGTAAAACCACTATTCAAAACAAAAGTTTTTATAACTCTAATTTTTCAACAAAATATATTACAGAAACATAAAAAACCAACAACTCCAGCAACTGAGAAAAATAAATGCTGCAAAGAACTGAAAAAAGAAGTGACCGATGTGAGACGAAAAACATATTTGAGAGAATTCCAATCAATTTTTTCAGGCAGTCGAAGATTGTCAGTGCTCACTTGGCAAAGAGAATTGCATTAGAGACACATTGTTTCCAAACGAGGAGATTCTGAACTGGGTATGTTGAGTGTAATATATTAGTTTTTGAAGAATTAGAACTCTTGGTCCAGTAGGGTACAGTATGTAAAAATGGTCCAGTAGGAAAACTAGACTAGGAATAAAAACTAGGAGAACTAGAACKCACAAGTTTGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTAAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGAAGAGGAAGTTCTACTGCTGTTCACGCTGGGGACATGCCAATGCAAAGAAAGCAAAGGCCGGAATTTTTTCCAAGCAATTATGCAACAAATGAAAAATTTACACCTTACATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAAAATGGTCCAGTAGGAAAA</pcr_primer_p1>
		<pcr_primer_p2>GTTGGTTCTTTCGCATTGTA</pcr_primer_p2>
		<pcr_amplicon_size>385</pcr_amplicon_size>
		<canonical_amplicon>TAAAAATGGTCCAGTAGGAAAACTAGACTAGGAATAAAAACTAGGAGAACTAGAACGCACAAGTTTGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTAAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAAC</canonical_amplicon>
		<polymorphic_amplicon>TAAAAATGGTCCAGTAGGAAAACTAGACTAGGAATAAAAACTAGGAGAACTAGAACKCACAAGTTTGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTAAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39221</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>394635</contig_pos>
        <strand></strand>
        <context>aactctacct[A/G]aatgacccca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCACAAGTTTGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCT</left_flank>
        <right_flank>AATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTTCCATCTTCGCTAAAGGTTAGTATAAATAGGACTAGTTGTTCTAGGCTGAAATGAGTAAAACCACTATTCAAAACAAAAGTTTTTATAACTCTAATTTTTCAACAAAATATATTACAGAAACATAAAAAACCAACAACTCCAGCAACTGAGAAAAATAAATGCTGCAAAGAACTGAAAAAAGAAGTGACCGATGTGAGACGAAAAACATATTTGAGAGAATTCCAATCAATTTTTTCAGGCAGTCGAAGATTGTCAGTGCTCACTTGGCAAAGAGAATTGCATTAGAGACACATTGTTTCCAAACGAGGAGATTCTGAACTGGGTATGTTGAGTGTAATATATTAGTTTTTGAAGAATTAGAACTCTTGGTCCAGTAGGGTACAGTATGTAAAAATGGTCCAGTAGGAAAACTAGACTAGGAATAAAAACTAGGAGAACTAGAACGCACAAGTTTGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTAAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGAAGAGGAAGTTCTACTGCTGTTCACGCTGGGGACATGCCAATGCAAAGAAAGCAAAGGCCGGAATTTTTTCCAAGCAATTATGCAACAAATGAAAAATTTACACCTTACATATTCAAATCTCCTCCGCTCGTTCTTATTTTTATTTTTGGGTTTCTGATAAT</canonical>
            <polymorphic>GTGTTCCATCTTCGCTAAAGGTTAGTATAAATAGGACTAGTTGTTCTAGGCTGAAATGAGTAAAACCACTATTCAAAACAAAAGTTTTTATAACTCTAATTTTTCAACAAAATATATTACAGAAACATAAAAAACCAACAACTCCAGCAACTGAGAAAAATAAATGCTGCAAAGAACTGAAAAAAGAAGTGACCGATGTGAGACGAAAAACATATTTGAGAGAATTCCAATCAATTTTTTCAGGCAGTCGAAGATTGTCAGTGCTCACTTGGCAAAGAGAATTGCATTAGAGACACATTGTTTCCAAACGAGGAGATTCTGAACTGGGTATGTTGAGTGTAATATATTAGTTTTTGAAGAATTAGAACTCTTGGTCCAGTAGGGTACAGTATGTAAAAATGGTCCAGTAGGAAAACTAGACTAGGAATAAAAACTAGGAGAACTAGAACGCACAAGTTTGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTRAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGAAGAGGAAGTTCTACTGCTGTTCACGCTGGGGACATGCCAATGCAAAGAAAGCAAAGGCCGGAATTTTTTCCAAGCAATTATGCAACAAATGAAAAATTTACACCTTACATATTCAAATCTCCTCCGCTCGTTCTTATTTTTATTTTTGGGTTTCTGATAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAATAAAAACTAGGAGAACTAGAAC</pcr_primer_p1>
		<pcr_primer_p2>GTTGGTTCTTTCGCATTGTA</pcr_primer_p2>
		<pcr_amplicon_size>355</pcr_amplicon_size>
		<canonical_amplicon>GGAATAAAAACTAGGAGAACTAGAACGCACAAGTTTGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTAAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAAC</canonical_amplicon>
		<polymorphic_amplicon>GGAATAAAAACTAGGAGAACTAGAACGCACAAGTTTGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTRAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39222</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>394711</contig_pos>
        <strand></strand>
        <context>agtcaacgga[C/A]aaaacatttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGA</left_flank>
        <right_flank>AAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAAAAGTTTTTATAACTCTAATTTTTCAACAAAATATATTACAGAAACATAAAAAACCAACAACTCCAGCAACTGAGAAAAATAAATGCTGCAAAGAACTGAAAAAAGAAGTGACCGATGTGAGACGAAAAACATATTTGAGAGAATTCCAATCAATTTTTTCAGGCAGTCGAAGATTGTCAGTGCTCACTTGGCAAAGAGAATTGCATTAGAGACACATTGTTTCCAAACGAGGAGATTCTGAACTGGGTATGTTGAGTGTAATATATTAGTTTTTGAAGAATTAGAACTCTTGGTCCAGTAGGGTACAGTATGTAAAAATGGTCCAGTAGGAAAACTAGACTAGGAATAAAAACTAGGAGAACTAGAACGCACAAGTTTGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTAAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGAAGAGGAAGTTCTACTGCTGTTCACGCTGGGGACATGCCAATGCAAAGAAAGCAAAGGCCGGAATTTTTTCCAAGCAATTATGCAACAAATGAAAAATTTACACCTTACATATTCAAATCTCCTCCGCTCGTTCTTATTTTTATTTTTGGGTTTCTGATAATTGTAAACATTCTAACAGAATGAGTTACCTAACTTTTACCTTTGAAACAATTTATCTCGGCTTCTACAGAAGGTATC</canonical>
            <polymorphic>AACAAAAGTTTTTATAACTCTAATTTTTCAACAAAATATATTACAGAAACATAAAAAACCAACAACTCCAGCAACTGAGAAAAATAAATGCTGCAAAGAACTGAAAAAAGAAGTGACCGATGTGAGACGAAAAACATATTTGAGAGAATTCCAATCAATTTTTTCAGGCAGTCGAAGATTGTCAGTGCTCACTTGGCAAAGAGAATTGCATTAGAGACACATTGTTTCCAAACGAGGAGATTCTGAACTGGGTATGTTGAGTGTAATATATTAGTTTTTGAAGAATTAGAACTCTTGGTCCAGTAGGGTACAGTATGTAAAAATGGTCCAGTAGGAAAACTAGACTAGGAATAAAAACTAGGAGAACTAGAACGCACAAGTTTGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTAAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGAMAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGAAGAGGAAGTTCTACTGCTGTTCACGCTGGGGACATGCCAATGCAAAGAAAGCAAAGGCCGGAATTTTTTCCAAGCAATTATGCAACAAATGAAAAATTTACACCTTACATATTCAAATCTCCTCCGCTCGTTCTTATTTTTATTTTTGGGTTTCTGATAATTGTAAACATTCTAACAGAATGAGTTACCTAACTTTTACCTTTGAAACAATTTATCTCGGCTTCTACAGAAGGTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATTTTGTTCACTAGAATCCTTA</pcr_primer_p1>
		<pcr_primer_p2>GTTGGTTCTTTCGCATTGTA</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>TGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTAAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAAC</canonical_amplicon>
		<polymorphic_amplicon>TGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTAAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGAMAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39223</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>394832</contig_pos>
        <strand>+</strand>
        <context>TTGGCGGGGT[A/T]TTAAAGTGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGT</left_flank>
        <right_flank>TTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGAGACGAAAAACATATTTGAGAGAATTCCAATCAATTTTTTCAGGCAGTCGAAGATTGTCAGTGCTCACTTGGCAAAGAGAATTGCATTAGAGACACATTGTTTCCAAACGAGGAGATTCTGAACTGGGTATGTTGAGTGTAATATATTAGTTTTTGAAGAATTAGAACTCTTGGTCCAGTAGGGTACAGTATGTAAAAATGGTCCAGTAGGAAAACTAGACTAGGAATAAAAACTAGGAGAACTAGAACGCACAAGTTTGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTAAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGAAGAGGAAGTTCTACTGCTGTTCACGCTGGGGACATGCCAATGCAAAGAAAGCAAAGGCCGGAATTTTTTCCAAGCAATTATGCAACAAATGAAAAATTTACACCTTACATATTCAAATCTCCTCCGCTCGTTCTTATTTTTATTTTTGGGTTTCTGATAATTGTAAACATTCTAACAGAATGAGTTACCTAACTTTTACCTTTGAAACAATTTATCTCGGCTTCTACAGAAGGTATCAAAAAGTGGTTAACTGACAAAATGTTTTTCACACACACTCTGATGAACGTTTTGTCAGTTGACTATTTTTTGATAACTTTCACAGAAAAAGAGATATGTGGTCTCAAAGTTGACGGTTCGG</canonical>
            <polymorphic>GTGAGACGAAAAACATATTTGAGAGAATTCCAATCAATTTTTTCAGGCAGTCGAAGATTGTCAGTGCTCACTTGGCAAAGAGAATTGCATTAGAGACACATTGTTTCCAAACGAGGAGATTCTGAACTGGGTATGTTGAGTGTAATATATTAGTTTTTGAAGAATTAGAACTCTTGGTCCAGTAGGGTACAGTATGTAAAAATGGTCCAGTAGGAAAACTAGACTAGGAATAAAAACTAGGAGAACTAGAACGCACAAGTTTGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTAAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTWTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGAAGAGGAAGTTCTACTGCTGTTCACGCTGGGGACATGCCAATGCAAAGAAAGCAAAGGCCGGAATTTTTTCCAAGCAATTATGCAACAAATGAAAAATTTACACCTTACATATTCAAATCTCCTCCGCTCGTTCTTATTTTTATTTTTGGGTTTCTGATAATTGTAAACATTCTAACAGAATGAGTTACCTAACTTTTACCTTTGAAACAATTTATCTCGGCTTCTACAGAAGGTATCAAAAAGTGGTTAACTGACAAAATGTTTTTCACACACACTCTGATGAACGTTTTGTCAGTTGACTATTTTTTGATAACTTTCACAGAAAAAGAGATATGTGGTCTCAAAGTTGACGGTTCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGATTTTGTTCACTAGAATCCTTA</pcr_primer_p1>
		<pcr_primer_p2>GTTGGTTCTTTCGCATTGTA</pcr_primer_p2>
		<pcr_amplicon_size>320</pcr_amplicon_size>
		<canonical_amplicon>TGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTAAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAAC</canonical_amplicon>
		<polymorphic_amplicon>TGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTAAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTWTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39224</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>394885</contig_pos>
        <strand>+</strand>
        <context>TTAGAATCAA[A/T]CTTTCAGCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAA</left_flank>
        <right_flank>CTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGATTGTCAGTGCTCACTTGGCAAAGAGAATTGCATTAGAGACACATTGTTTCCAAACGAGGAGATTCTGAACTGGGTATGTTGAGTGTAATATATTAGTTTTTGAAGAATTAGAACTCTTGGTCCAGTAGGGTACAGTATGTAAAAATGGTCCAGTAGGAAAACTAGACTAGGAATAAAAACTAGGAGAACTAGAACGCACAAGTTTGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTAAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGAAGAGGAAGTTCTACTGCTGTTCACGCTGGGGACATGCCAATGCAAAGAAAGCAAAGGCCGGAATTTTTTCCAAGCAATTATGCAACAAATGAAAAATTTACACCTTACATATTCAAATCTCCTCCGCTCGTTCTTATTTTTATTTTTGGGTTTCTGATAATTGTAAACATTCTAACAGAATGAGTTACCTAACTTTTACCTTTGAAACAATTTATCTCGGCTTCTACAGAAGGTATCAAAAAGTGGTTAACTGACAAAATGTTTTTCACACACACTCTGATGAACGTTTTGTCAGTTGACTATTTTTTGATAACTTTCACAGAAAAAGAGATATGTGGTCTCAAAGTTGACGGTTCGGAGGCATTCTATTACTACGCTTACTGTATACTCCTGTTATTTTTTATTTTTCAT</canonical>
            <polymorphic>AAGATTGTCAGTGCTCACTTGGCAAAGAGAATTGCATTAGAGACACATTGTTTCCAAACGAGGAGATTCTGAACTGGGTATGTTGAGTGTAATATATTAGTTTTTGAAGAATTAGAACTCTTGGTCCAGTAGGGTACAGTATGTAAAAATGGTCCAGTAGGAAAACTAGACTAGGAATAAAAACTAGGAGAACTAGAACGCACAAGTTTGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTAAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAAWCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGAAGAGGAAGTTCTACTGCTGTTCACGCTGGGGACATGCCAATGCAAAGAAAGCAAAGGCCGGAATTTTTTCCAAGCAATTATGCAACAAATGAAAAATTTACACCTTACATATTCAAATCTCCTCCGCTCGTTCTTATTTTTATTTTTGGGTTTCTGATAATTGTAAACATTCTAACAGAATGAGTTACCTAACTTTTACCTTTGAAACAATTTATCTCGGCTTCTACAGAAGGTATCAAAAAGTGGTTAACTGACAAAATGTTTTTCACACACACTCTGATGAACGTTTTGTCAGTTGACTATTTTTTGATAACTTTCACAGAAAAAGAGATATGTGGTCTCAAAGTTGACGGTTCGGAGGCATTCTATTACTACGCTTACTGTATACTCCTGTTATTTTTTATTTTTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGATTTTGTTCACTAGAATCCTTA</pcr_primer_p1>
		<pcr_primer_p2>GTTGTAGCCAAAGACACAGC</pcr_primer_p2>
		<pcr_amplicon_size>362</pcr_amplicon_size>
		<canonical_amplicon>TGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTAAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAAC</canonical_amplicon>
		<polymorphic_amplicon>TGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTAAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAAWCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39225</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>394975</contig_pos>
        <strand>+</strand>
        <context>ATTGAACGGA[A/G]GAGGAAGTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGA</left_flank>
        <right_flank>GAGGAAGTTCTACTGCTGTTCACGCTGGGGACATGCCAATGCAAAGAAAG</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATATATTAGTTTTTGAAGAATTAGAACTCTTGGTCCAGTAGGGTACAGTATGTAAAAATGGTCCAGTAGGAAAACTAGACTAGGAATAAAAACTAGGAGAACTAGAACGCACAAGTTTGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTAAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGAAGAGGAAGTTCTACTGCTGTTCACGCTGGGGACATGCCAATGCAAAGAAAGCAAAGGCCGGAATTTTTTCCAAGCAATTATGCAACAAATGAAAAATTTACACCTTACATATTCAAATCTCCTCCGCTCGTTCTTATTTTTATTTTTGGGTTTCTGATAATTGTAAACATTCTAACAGAATGAGTTACCTAACTTTTACCTTTGAAACAATTTATCTCGGCTTCTACAGAAGGTATCAAAAAGTGGTTAACTGACAAAATGTTTTTCACACACACTCTGATGAACGTTTTGTCAGTTGACTATTTTTTGATAACTTTCACAGAAAAAGAGATATGTGGTCTCAAAGTTGACGGTTCGGAGGCATTCTATTACTACGCTTACTGTATACTCCTGTTATTTTTTATTTTTCATCATTCGTCCTTCTTCCCATTCTATTGCACACATTAAAAATATTATTTTTTTCAAATGTTCACATTGTCTTAATTTTTGATAACTTGTACT</canonical>
            <polymorphic>AATATATTAGTTTTTGAAGAATTAGAACTCTTGGTCCAGTAGGGTACAGTATGTAAAAATGGTCCAGTAGGAAAACTAGACTAGGAATAAAAACTAGGAGAACTAGAACGCACAAGTTTGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTAAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGARGAGGAAGTTCTACTGCTGTTCACGCTGGGGACATGCCAATGCAAAGAAAGCAAAGGCCGGAATTTTTTCCAAGCAATTATGCAACAAATGAAAAATTTACACCTTACATATTCAAATCTCCTCCGCTCGTTCTTATTTTTATTTTTGGGTTTCTGATAATTGTAAACATTCTAACAGAATGAGTTACCTAACTTTTACCTTTGAAACAATTTATCTCGGCTTCTACAGAAGGTATCAAAAAGTGGTTAACTGACAAAATGTTTTTCACACACACTCTGATGAACGTTTTGTCAGTTGACTATTTTTTGATAACTTTCACAGAAAAAGAGATATGTGGTCTCAAAGTTGACGGTTCGGAGGCATTCTATTACTACGCTTACTGTATACTCCTGTTATTTTTTATTTTTCATCATTCGTCCTTCTTCCCATTCTATTGCACACATTAAAAATATTATTTTTTTCAAATGTTCACATTGTCTTAATTTTTGATAACTTGTACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAATATGAATTTTGTAACATTAG</pcr_primer_p1>
		<pcr_primer_p2>GGAGGAGATTTGAATATGTAAGG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGAAGAGGAAGTTCTACTGCTGTTCACGCTGGGGACATGCCAATGCAAAGAAAGCAAAGGCCGGAATTTTTTCCAAGCAATTATGCAACAAATGAAAAATTTACACCTTACATATTCAAATCTCCTCC</canonical_amplicon>
		<polymorphic_amplicon>TCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGARGAGGAAGTTCTACTGCTGTTCACGCTGGGGACATGCCAATGCAAAGAAAGCAAAGGCCGGAATTTTTTCCAAGCAATTATGCAACAAATGAAAAATTTACACCTTACATATTCAAATCTCCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39226</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>395005</contig_pos>
        <strand>+</strand>
        <context>TCACGCTGGG[C/G]ACATGCSAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CGAGGAATACATTGAACGGAAGAGGAAGTTCTACTGCTGTTCACGCTGGG</left_flank>
        <right_flank>ACATGCCAATGCAAAGAAAGCAAAGGCCGGAATTTTTTCCAAGCAATTAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGGTCCAGTAGGGTACAGTATGTAAAAATGGTCCAGTAGGAAAACTAGACTAGGAATAAAAACTAGGAGAACTAGAACGCACAAGTTTGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTAAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGAAGAGGAAGTTCTACTGCTGTTCACGCTGGGGACATGCCAATGCAAAGAAAGCAAAGGCCGGAATTTTTTCCAAGCAATTATGCAACAAATGAAAAATTTACACCTTACATATTCAAATCTCCTCCGCTCGTTCTTATTTTTATTTTTGGGTTTCTGATAATTGTAAACATTCTAACAGAATGAGTTACCTAACTTTTACCTTTGAAACAATTTATCTCGGCTTCTACAGAAGGTATCAAAAAGTGGTTAACTGACAAAATGTTTTTCACACACACTCTGATGAACGTTTTGTCAGTTGACTATTTTTTGATAACTTTCACAGAAAAAGAGATATGTGGTCTCAAAGTTGACGGTTCGGAGGCATTCTATTACTACGCTTACTGTATACTCCTGTTATTTTTTATTTTTCATCATTCGTCCTTCTTCCCATTCTATTGCACACATTAAAAATATTATTTTTTTCAAATGTTCACATTGTCTTAATTTTTGATAACTTGTACTACCAAACTCTTCCCCGCTTTTTAAAGTCAT</canonical>
            <polymorphic>TTGGTCCAGTAGGGTACAGTATGTAAAAATGGTCCAGTAGGAAAACTAGACTAGGAATAAAAACTAGGAGAACTAGAACGCACAAGTTTGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTAAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGAAGAGGAAGTTCTACTGCTGTTCACGCTGGGSACATGCCAATGCAAAGAAAGCAAAGGCCGGAATTTTTTCCAAGCAATTATGCAACAAATGAAAAATTTACACCTTACATATTCAAATCTCCTCCGCTCGTTCTTATTTTTATTTTTGGGTTTCTGATAATTGTAAACATTCTAACAGAATGAGTTACCTAACTTTTACCTTTGAAACAATTTATCTCGGCTTCTACAGAAGGTATCAAAAAGTGGTTAACTGACAAAATGTTTTTCACACACACTCTGATGAACGTTTTGTCAGTTGACTATTTTTTGATAACTTTCACAGAAAAAGAGATATGTGGTCTCAAAGTTGACGGTTCGGAGGCATTCTATTACTACGCTTACTGTATACTCCTGTTATTTTTTATTTTTCATCATTCGTCCTTCTTCCCATTCTATTGCACACATTAAAAATATTATTTTTTTCAAATGTTCACATTGTCTTAATTTTTGATAACTTGTACTACCAAACTCTTCCCCGCTTTTTAAAGTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAATATGAATTTTGTAACATTAG</pcr_primer_p1>
		<pcr_primer_p2>GGAGGAGATTTGAATATGTAAGG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGAAGAGGAAGTTCTACTGCTGTTCACGCTGGGGACATGCCAATGCAAAGAAAGCAAAGGCCGGAATTTTTTCCAAGCAATTATGCAACAAATGAAAAATTTACACCTTACATATTCAAATCTCCTCC</canonical_amplicon>
		<polymorphic_amplicon>TCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGAAGAGGAAGTTCTACTGCTGTTCACGCTGGGSACATGCCAATGCAAAGAAAGCAAAGGCCGGAATTTTTTCCAAGCAATTATGCAACAAATGAAAAATTTACACCTTACATATTCAAATCTCCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39227</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>395012</contig_pos>
        <strand>+</strand>
        <context>GGGSACATGC[C/G]AATGCAAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TACATTGAACGGAAGAGGAAGTTCTACTGCTGTTCACGCTGGGGACATGC</left_flank>
        <right_flank>AATGCAAAGAAAGCAAAGGCCGGAATTTTTTCCAAGCAATTATGCAACAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTAGGGTACAGTATGTAAAAATGGTCCAGTAGGAAAACTAGACTAGGAATAAAAACTAGGAGAACTAGAACGCACAAGTTTGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTAAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGAAGAGGAAGTTCTACTGCTGTTCACGCTGGGGACATGCCAATGCAAAGAAAGCAAAGGCCGGAATTTTTTCCAAGCAATTATGCAACAAATGAAAAATTTACACCTTACATATTCAAATCTCCTCCGCTCGTTCTTATTTTTATTTTTGGGTTTCTGATAATTGTAAACATTCTAACAGAATGAGTTACCTAACTTTTACCTTTGAAACAATTTATCTCGGCTTCTACAGAAGGTATCAAAAAGTGGTTAACTGACAAAATGTTTTTCACACACACTCTGATGAACGTTTTGTCAGTTGACTATTTTTTGATAACTTTCACAGAAAAAGAGATATGTGGTCTCAAAGTTGACGGTTCGGAGGCATTCTATTACTACGCTTACTGTATACTCCTGTTATTTTTTATTTTTCATCATTCGTCCTTCTTCCCATTCTATTGCACACATTAAAAATATTATTTTTTTCAAATGTTCACATTGTCTTAATTTTTGATAACTTGTACTACCAAACTCTTCCCCGCTTTTTAAAGTCATCGTTAAA</canonical>
            <polymorphic>AGTAGGGTACAGTATGTAAAAATGGTCCAGTAGGAAAACTAGACTAGGAATAAAAACTAGGAGAACTAGAACGCACAAGTTTGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTAAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGAAGAGGAAGTTCTACTGCTGTTCACGCTGGGGACATGCSAATGCAAAGAAAGCAAAGGCCGGAATTTTTTCCAAGCAATTATGCAACAAATGAAAAATTTACACCTTACATATTCAAATCTCCTCCGCTCGTTCTTATTTTTATTTTTGGGTTTCTGATAATTGTAAACATTCTAACAGAATGAGTTACCTAACTTTTACCTTTGAAACAATTTATCTCGGCTTCTACAGAAGGTATCAAAAAGTGGTTAACTGACAAAATGTTTTTCACACACACTCTGATGAACGTTTTGTCAGTTGACTATTTTTTGATAACTTTCACAGAAAAAGAGATATGTGGTCTCAAAGTTGACGGTTCGGAGGCATTCTATTACTACGCTTACTGTATACTCCTGTTATTTTTTATTTTTCATCATTCGTCCTTCTTCCCATTCTATTGCACACATTAAAAATATTATTTTTTTCAAATGTTCACATTGTCTTAATTTTTGATAACTTGTACTACCAAACTCTTCCCCGCTTTTTAAAGTCATCGTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCCAATATGAATTTTGTAACATTAG</pcr_primer_p1>
		<pcr_primer_p2>GGAGGAGATTTGAATATGTAAGG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGAAGAGGAAGTTCTACTGCTGTTCACGCTGGGGACATGCCAATGCAAAGAAAGCAAAGGCCGGAATTTTTTCCAAGCAATTATGCAACAAATGAAAAATTTACACCTTACATATTCAAATCTCCTCC</canonical_amplicon>
		<polymorphic_amplicon>TCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGAAGAGGAAGTTCTACTGCTGTTCACGCTGGGGACATGCSAATGCAAAGAAAGCAAAGGCCGGAATTTTTTCCAAGCAATTATGCAACAAATGAAAAATTTACACCTTACATATTCAAATCTCCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39228</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>395039</contig_pos>
        <strand>+</strand>
        <context>AGGCCGGAAT[G/T]TTTTCCAAGC</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGCTGTTCACGCTGGGGACATGCCAATGCAAAGAAAGCAAAGGCCGGAAT</left_flank>
        <right_flank>TTTTCCAAGCAATTATGCAACAAATGAAAAATTTACACCTTACATATTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTAGGAAAACTAGACTAGGAATAAAAACTAGGAGAACTAGAACGCACAAGTTTGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTAAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGAAGAGGAAGTTCTACTGCTGTTCACGCTGGGGACATGCCAATGCAAAGAAAGCAAAGGCCGGAATTTTTTCCAAGCAATTATGCAACAAATGAAAAATTTACACCTTACATATTCAAATCTCCTCCGCTCGTTCTTATTTTTATTTTTGGGTTTCTGATAATTGTAAACATTCTAACAGAATGAGTTACCTAACTTTTACCTTTGAAACAATTTATCTCGGCTTCTACAGAAGGTATCAAAAAGTGGTTAACTGACAAAATGTTTTTCACACACACTCTGATGAACGTTTTGTCAGTTGACTATTTTTTGATAACTTTCACAGAAAAAGAGATATGTGGTCTCAAAGTTGACGGTTCGGAGGCATTCTATTACTACGCTTACTGTATACTCCTGTTATTTTTTATTTTTCATCATTCGTCCTTCTTCCCATTCTATTGCACACATTAAAAATATTATTTTTTTCAAATGTTCACATTGTCTTAATTTTTGATAACTTGTACTACCAAACTCTTCCCCGCTTTTTAAAGTCATCGTTAAACTTATTTCCCCCATTTTTTCTTTATCT</canonical>
            <polymorphic>CAGTAGGAAAACTAGACTAGGAATAAAAACTAGGAGAACTAGAACGCACAAGTTTGATTTTGTTCACTAGAATCCTTATTCTAAAAACTCTACCTAAATGACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGAAGAGGAAGTTCTACTGCTGTTCACGCTGGGGACATGCCAATGCAAAGAAAGCAAAGGCCGGAATKTTTTCCAAGCAATTATGCAACAAATGAAAAATTTACACCTTACATATTCAAATCTCCTCCGCTCGTTCTTATTTTTATTTTTGGGTTTCTGATAATTGTAAACATTCTAACAGAATGAGTTACCTAACTTTTACCTTTGAAACAATTTATCTCGGCTTCTACAGAAGGTATCAAAAAGTGGTTAACTGACAAAATGTTTTTCACACACACTCTGATGAACGTTTTGTCAGTTGACTATTTTTTGATAACTTTCACAGAAAAAGAGATATGTGGTCTCAAAGTTGACGGTTCGGAGGCATTCTATTACTACGCTTACTGTATACTCCTGTTATTTTTTATTTTTCATCATTCGTCCTTCTTCCCATTCTATTGCACACATTAAAAATATTATTTTTTTCAAATGTTCACATTGTCTTAATTTTTGATAACTTGTACTACCAAACTCTTCCCCGCTTTTTAAAGTCATCGTTAAACTTATTTCCCCCATTTTTTCTTTATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>471 197 173 126 33</canonical_bands>
                <polymorphic_bands>471 206 197 126</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>273 173 125 109 84 72 64 50 19 17 14</canonical_bands>
                <polymorphic_bands>273 187 125 109 84 72 64 50 19 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCAATATGAATTTTGTAACATTAG</pcr_primer_p1>
		<pcr_primer_p2>GGAGGAGATTTGAATATGTAAGG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGAAGAGGAAGTTCTACTGCTGTTCACGCTGGGGACATGCCAATGCAAAGAAAGCAAAGGCCGGAATTTTTTCCAAGCAATTATGCAACAAATGAAAAATTTACACCTTACATATTCAAATCTCCTCC</canonical_amplicon>
		<polymorphic_amplicon>TCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGAAGAGGAAGTTCTACTGCTGTTCACGCTGGGGACATGCCAATGCAAAGAAAGCAAAGGCCGGAATKTTTTCCAAGCAATTATGCAACAAATGAAAAATTTACACCTTACATATTCAAATCTCCTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39229</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>395139</contig_pos>
        <strand></strand>
        <context>TGATAATTgt[A/G]aacattctaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATCTCCTCCGCTCGTTCTTATTTTTATTTTTGGGTTTCTGATAATTGT</left_flank>
        <right_flank>AACATTCTAACAGAATGAGTTACCTAACTTTTACCTTTGAAACAATTTAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGAAGAGGAAGTTCTACTGCTGTTCACGCTGGGGACATGCCAATGCAAAGAAAGCAAAGGCCGGAATTTTTTCCAAGCAATTATGCAACAAATGAAAAATTTACACCTTACATATTCAAATCTCCTCCGCTCGTTCTTATTTTTATTTTTGGGTTTCTGATAATTGTAAACATTCTAACAGAATGAGTTACCTAACTTTTACCTTTGAAACAATTTATCTCGGCTTCTACAGAAGGTATCAAAAAGTGGTTAACTGACAAAATGTTTTTCACACACACTCTGATGAACGTTTTGTCAGTTGACTATTTTTTGATAACTTTCACAGAAAAAGAGATATGTGGTCTCAAAGTTGACGGTTCGGAGGCATTCTATTACTACGCTTACTGTATACTCCTGTTATTTTTTATTTTTCATCATTCGTCCTTCTTCCCATTCTATTGCACACATTAAAAATATTATTTTTTTCAAATGTTCACATTGTCTTAATTTTTGATAACTTGTACTACCAAACTCTTCCCCGCTTTTTAAAGTCATCGTTAAACTTATTTCCCCCATTTTTTCTTTATCTTTCTGTCCTCATGATTTCGAATGGTACGGAAATCAGCTCGAACTTTCAATAATTTTCATTCTTTTCGAACGTTTTTCTAGTCAATTGGGCAATAATTGAA</canonical>
            <polymorphic>ACCCCAAAGCTTTTAGCTTTGAAATAATTTATCTCGGTTCATGTAATAGGTATCATAAAGAAGTCAACGGACAAAACATTTTTGATGTTTCAATAGGAATTTTAGCCGCTGACTAATTTTTGATATCTTCTACAGAAAATGAGATATATTGCCTCAAAGTGGACGGTCTGAAGATGTTGAAGTTGGCGGGGTTTTAAAGTGTATACAGTATTAATCCAATATGAATTTTGTAACATTAGAATCAATCTTTCAGCTACAATGCGAAAGAACCAACTGTGGTAAGTGGTTCCACGTGTGCTGTGTCTTTGGCTACAACGAGGAATACATTGAACGGAAGAGGAAGTTCTACTGCTGTTCACGCTGGGGACATGCCAATGCAAAGAAAGCAAAGGCCGGAATTTTTTCCAAGCAATTATGCAACAAATGAAAAATTTACACCTTACATATTCAAATCTCCTCCGCTCGTTCTTATTTTTATTTTTGGGTTTCTGATAATTGTRAACATTCTAACAGAATGAGTTACCTAACTTTTACCTTTGAAACAATTTATCTCGGCTTCTACAGAAGGTATCAAAAAGTGGTTAACTGACAAAATGTTTTTCACACACACTCTGATGAACGTTTTGTCAGTTGACTATTTTTTGATAACTTTCACAGAAAAAGAGATATGTGGTCTCAAAGTTGACGGTTCGGAGGCATTCTATTACTACGCTTACTGTATACTCCTGTTATTTTTTATTTTTCATCATTCGTCCTTCTTCCCATTCTATTGCACACATTAAAAATATTATTTTTTTCAAATGTTCACATTGTCTTAATTTTTGATAACTTGTACTACCAAACTCTTCCCCGCTTTTTAAAGTCATCGTTAAACTTATTTCCCCCATTTTTTCTTTATCTTTCTGTCCTCATGATTTCGAATGGTACGGAAATCAGCTCGAACTTTCAATAATTTTCATTCTTTTCGAACGTTTTTCTAGTCAATTGGGCAATAATTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACCTTACATATTCAAATCTCCT</pcr_primer_p1>
		<pcr_primer_p2>GGACGAATGATGAAAAATAAAA</pcr_primer_p2>
		<pcr_amplicon_size>321</pcr_amplicon_size>
		<canonical_amplicon>ACACCTTACATATTCAAATCTCCTCCGCTCGTTCTTATTTTTATTTTTGGGTTTCTGATAATTGTAAACATTCTAACAGAATGAGTTACCTAACTTTTACCTTTGAAACAATTTATCTCGGCTTCTACAGAAGGTATCAAAAAGTGGTTAACTGACAAAATGTTTTTCACACACACTCTGATGAACGTTTTGTCAGTTGACTATTTTTTGATAACTTTCACAGAAAAAGAGATATGTGGTCTCAAAGTTGACGGTTCGGAGGCATTCTATTACTACGCTTACTGTATACTCCTGTTATTTTTTATTTTTCATCATTCGTCC</canonical_amplicon>
		<polymorphic_amplicon>ACACCTTACATATTCAAATCTCCTCCGCTCGTTCTTATTTTTATTTTTGGGTTTCTGATAATTGTRAACATTCTAACAGAATGAGTTACCTAACTTTTACCTTTGAAACAATTTATCTCGGCTTCTACAGAAGGTATCAAAAAGTGGTTAACTGACAAAATGTTTTTCACACACACTCTGATGAACGTTTTGTCAGTTGACTATTTTTTGATAACTTTCACAGAAAAAGAGATATGTGGTCTCAAAGTTGACGGTTCGGAGGCATTCTATTACTACGCTTACTGTATACTCCTGTTATTTTTTATTTTTCATCATTCGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39230</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>420415</contig_pos>
        <strand>+</strand>
        <context>CTGCCATCTC[C/T]TTTTTTTCTG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCATCGCACGCAAGTGTATTCATTAATCTGTCATGTCTTCTGCCATCTC</left_flank>
        <right_flank>TTTTTTTCTGGAGTGCTTTTCCACCACCTTGTTACTCTCTACACTCTTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATTCAGTTAATTTCCGATGACTTTCGCTTCGCTCAAAAAAATACCGATGGCTTCTTCGAACGTGCGTTACAGCATTATTTTGATTCCAAGATGAAAAGTAATGTCTGACAATTTTGTATCGAATGCAACTGAAAGAAAAAATAGATCGACATAGGGTGAGACACTGTATTGTAATCACATTCATAGAAATGCGGGCTTCTCCACATAATCAGATAATTTTTGCCTAATTTTTTAATGATAAATCTCATGAATTTCTTCCAGACTCGAGAAAAATTGTCTGCCGGGTCTTTTCTATTATCCAGACAGACTATTATGTAAGACGTCAATGGTAACTTGAAAACAACACCCTGAATTTCAGCCCAAGAGCGATTTTTTGGTTTGTCTGATTACTAACTAATTACGGTTCTAAATGTCTAAATTAGAATTGAAACACAGCACTTATCAATACTCATCGCACGCAAGTGTATTCATTAATCTGTCATGTCTTCTGCCATCTCTTTTTTTTCTGGAGTGCTTTTCCACCACCTTGTTACTCTCTACACTCTTATTCGCATTCAACCCCCCCCCCCCCCTTCCTGCATTAGATACGCGTTTTCCACTCGAGACCCATATTTATTGATTGGCCAGTCAATATTAACTGTCTTTACTAACCTCTAGACAATCTATTGTCTCATTTTTTATTTCATCCAGCTTGTCGTACACTATCTTCTCTCACATTCTCTATAACAGTTATTCTTGTCGATTGATTTATTCCTTCTATTAAATATGAACGGACCGAAATTTCCTCTCCACCGCTTACCCAAAGATCTTTGTTCGGAAGTACTCAGAACTATGGACCTCTATGAAATGTGAGTTTATTTTCTTAAAACGGATTCTCTGCCTGAACTAAAAATAGTGTTGTGCAGGAAAATTCAAACTATTTTTTATGCATTGTTGTTTTATATGTTGAAGGCCGAGGCAACGTTAATGTAAAAAATGTACATGATGATAAGACTCTT</canonical>
            <polymorphic>ATATTCAGTTAATTTCCGATGACTTTCGCTTCGCTCAAAAAAATACCGATGGCTTCTTCGAACGTGCGTTACAGCATTATTTTGATTCCAAGATGAAAAGTAATGTCTGACAATTTTGTATCGAATGCAACTGAAAGAAAAAATAGATCGACATAGGGTGAGACACTGTATTGTAATCACATTCATAGAAATGCGGGCTTCTCCACATAATCAGATAATTTTTGCCTAATTTTTTAATGATAAATCTCATGAATTTCTTCCAGACTCGAGAAAAATTGTCTGCCGGGTCTTTTCTATTATCCAGACAGACTATTATGTAAGACGTCAATGGTAACTTGAAAACAACACCCTGAATTTCAGCCCAAGAGCGATTTTTTGGTTTGTCTGATTACTAACTAATTACGGTTCTAAATGTCTAAATTAGAATTGAAACACAGCACTTATCAATACTCATCGCACGCAAGTGTATTCATTAATCTGTCATGTCTTCTGCCATCTCYTTTTTTTCTGGAGTGCTTTTCCACCACCTTGTTACTCTCTACACTCTTATTCGCATTCAACCCCCCCCCCCCCCTTCCTGCATTAGATACGCGTTTTCCACTCGAGACCCATATTTATTGATTGGCCAGTCAATATTAACTGTCTTTACTAACCTCTAGACAATCTATTGTCTCATTTTTTATTTCATCCAGCTTGTCGTACACTATCTTCTCTCACATTCTCTATAACAGTTATTCTTGTCGATTGATTTATTCCTTCTATTAAATATGAACGGACCGAAATTTCCTCTCCACCGCTTACCCAAAGATCTTTGTTCGGAAGTACTCAGAACTATGGACCTCTATGAAATGTGAGTTTATTTTCTTAAAACGGATTCTCTGCCTGAACTAAAAATAGTGTTGTGCAGGAAAATTCAAACTATTTTTTATGCATTGTTGTTTTATATGTTGAAGGCCGAGGCAACGTTAATGTAAAAAATGTACATGATGATAAGACTCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTAAGACGTCAATGGTAACTT</pcr_primer_p1>
		<pcr_primer_p2>GAATGCGAATAAGAGTGTAGAGA</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATGTAAGACGTCAATGGTAACTTGAAAACAACACCCTGAATTTCAGCCCAAGAGCGATTTTTTGGTTTGTCTGATTACTAACTAATTACGGTTCTAAATGTCTAAATTAGAATTGAAACACAGCACTTATCAATACTCATCGCACGCAAGTGTATTCATTAATCTGTCATGTCTTCTGCCATCTCTTTTTTTTCTGGAGTGCTTTTCCACCACCTTGTTACTCTCTACACTCTTATTCGCATTC</canonical_amplicon>
		<polymorphic_amplicon>ATGTAAGACGTCAATGGTAACTTGAAAACAACACCCTGAATTTCAGCCCAAGAGCGATTTTTTGGTTTGTCTGATTACTAACTAATTACGGTTCTAAATGTCTAAATTAGAATTGAAACACAGCACTTATCAATACTCATCGCACGCAAGTGTATTCATTAATCTGTCATGTCTTCTGCCATCTCYTTTTTTTCTGGAGTGCTTTTCCACCACCTTGTTACTCTCTACACTCTTATTCGCATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39231</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>420476</contig_pos>
        <strand>+</strand>
        <context>TCGCATTCAA[G/T]CCCCCCCCCC</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAGTGCTTTTCCACCACCTTGTTACTCTCTACACTCTTATTCGCATTCAA</left_flank>
        <right_flank>CCCCCCCCCCCCCTTCCTGCATTAGATACGCGTTTTCCACTCGAGACCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGTGCGTTACAGCATTATTTTGATTCCAAGATGAAAAGTAATGTCTGACAATTTTGTATCGAATGCAACTGAAAGAAAAAATAGATCGACATAGGGTGAGACACTGTATTGTAATCACATTCATAGAAATGCGGGCTTCTCCACATAATCAGATAATTTTTGCCTAATTTTTTAATGATAAATCTCATGAATTTCTTCCAGACTCGAGAAAAATTGTCTGCCGGGTCTTTTCTATTATCCAGACAGACTATTATGTAAGACGTCAATGGTAACTTGAAAACAACACCCTGAATTTCAGCCCAAGAGCGATTTTTTGGTTTGTCTGATTACTAACTAATTACGGTTCTAAATGTCTAAATTAGAATTGAAACACAGCACTTATCAATACTCATCGCACGCAAGTGTATTCATTAATCTGTCATGTCTTCTGCCATCTCTTTTTTTTCTGGAGTGCTTTTCCACCACCTTGTTACTCTCTACACTCTTATTCGCATTCAACCCCCCCCCCCCCCTTCCTGCATTAGATACGCGTTTTCCACTCGAGACCCATATTTATTGATTGGCCAGTCAATATTAACTGTCTTTACTAACCTCTAGACAATCTATTGTCTCATTTTTTATTTCATCCAGCTTGTCGTACACTATCTTCTCTCACATTCTCTATAACAGTTATTCTTGTCGATTGATTTATTCCTTCTATTAAATATGAACGGACCGAAATTTCCTCTCCACCGCTTACCCAAAGATCTTTGTTCGGAAGTACTCAGAACTATGGACCTCTATGAAATGTGAGTTTATTTTCTTAAAACGGATTCTCTGCCTGAACTAAAAATAGTGTTGTGCAGGAAAATTCAAACTATTTTTTATGCATTGTTGTTTTATATGTTGAAGGCCGAGGCAACGTTAATGTAAAAAATGTACATGATGATAAGACTCTTCCGGTAATAGTGTTGTGCAGACAAATTCCAACCAGGTTTTACGCATTGAGATTTGACCGAA</canonical>
            <polymorphic>ACGTGCGTTACAGCATTATTTTGATTCCAAGATGAAAAGTAATGTCTGACAATTTTGTATCGAATGCAACTGAAAGAAAAAATAGATCGACATAGGGTGAGACACTGTATTGTAATCACATTCATAGAAATGCGGGCTTCTCCACATAATCAGATAATTTTTGCCTAATTTTTTAATGATAAATCTCATGAATTTCTTCCAGACTCGAGAAAAATTGTCTGCCGGGTCTTTTCTATTATCCAGACAGACTATTATGTAAGACGTCAATGGTAACTTGAAAACAACACCCTGAATTTCAGCCCAAGAGCGATTTTTTGGTTTGTCTGATTACTAACTAATTACGGTTCTAAATGTCTAAATTAGAATTGAAACACAGCACTTATCAATACTCATCGCACGCAAGTGTATTCATTAATCTGTCATGTCTTCTGCCATCTCTTTTTTTTCTGGAGTGCTTTTCCACCACCTTGTTACTCTCTACACTCTTATTCGCATTCAAKCCCCCCCCCCCCCTTCCTGCATTAGATACGCGTTTTCCACTCGAGACCCATATTTATTGATTGGCCAGTCAATATTAACTGTCTTTACTAACCTCTAGACAATCTATTGTCTCATTTTTTATTTCATCCAGCTTGTCGTACACTATCTTCTCTCACATTCTCTATAACAGTTATTCTTGTCGATTGATTTATTCCTTCTATTAAATATGAACGGACCGAAATTTCCTCTCCACCGCTTACCCAAAGATCTTTGTTCGGAAGTACTCAGAACTATGGACCTCTATGAAATGTGAGTTTATTTTCTTAAAACGGATTCTCTGCCTGAACTAAAAATAGTGTTGTGCAGGAAAATTCAAACTATTTTTTATGCATTGTTGTTTTATATGTTGAAGGCCGAGGCAACGTTAATGTAAAAAATGTACATGATGATAAGACTCTTCCGGTAATAGTGTTGTGCAGACAAATTCCAACCAGGTTTTACGCATTGAGATTTGACCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTAATCTGTCATGTCTTCTG</pcr_primer_p1>
		<pcr_primer_p2>TGAGAGAAGATAGTGTACGACAAG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCATTAATCTGTCATGTCTTCTGCCATCTCTTTTTTTTCTGGAGTGCTTTTCCACCACCTTGTTACTCTCTACACTCTTATTCGCATTCAACCCCCCCCCCCCCCTTCCTGCATTAGATACGCGTTTTCCACTCGAGACCCATATTTATTGATTGGCCAGTCAATATTAACTGTCTTTACTAACCTCTAGACAATCTATTGTCTCATTTTTTATTTCATCCAGCTTGTCGTACACTATCTTCTCTCA</canonical_amplicon>
		<polymorphic_amplicon>TCATTAATCTGTCATGTCTTCTGCCATCTCTTTTTTTTCTGGAGTGCTTTTCCACCACCTTGTTACTCTCTACACTCTTATTCGCATTCAAKCCCCCCCCCCCCCTTCCTGCATTAGATACGCGTTTTCCACTCGAGACCCATATTTATTGATTGGCCAGTCAATATTAACTGTCTTTACTAACCTCTAGACAATCTATTGTCTCATTTTTTATTTCATCCAGCTTGTCGTACACTATCTTCTCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39232</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>445604</contig_pos>
        <strand>+</strand>
        <context>AGTCTGGTTA[A/G]TTAATTGACT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACGGTACAATGATCTACAGCCCAGTGTCGAGTCTTTAAATAGTCTGGTTA</left_flank>
        <right_flank>TTAATTGACTGAACAATATCTCTCCGTTTGACGCTTCTTGTTTACAGGTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTGCTTTAAAATTATTATATCATAGAGGAGCAAATGCATAAAAATCTTGCACACCAACAGTAAATGATTGATCATTAGAAATGCCCACGTGAGATTCATGAACATCAGGATAGAAAGAGCACCAGGAACGTCTTGCTTGTGCGGAGCTGAGAATCTTGAGGAGCAGATGCAAAAGGTAGACAATAAGAAAAGCAATTGCGACGAGACAAAGAGGCTTGTTTGGCTTACATCGCTAATGTAAGCAGAAACTAATCCGCGCATAGCAGAAACGCCAAGAGGAGCTGGAAACCTTTGCCGAGTATTTGAGAAGGGAAGCTAAGGATCGTGAACGCCAACGCAGGAATTAAGAACGACTCCAACGTGAAATAGATGTGTGAGCTCATCGGGAGAAGGTGTGCGCATAGCTCAGAAACTGCTACACTCGCTGGTCAACAAGCCTAACAACGTCACGGTACAATGATCTACAGCCCAGTGTCGAGTCTTTAAATAGTCTGGTTAGTTAATTGACTGAACAATATCTCTCCGTTTGACGCTTCTTGTTTACAGGTGGAATCAGAAGGACTTGAAAATGACTTCTTGGCAGAAGAACGAAGTGAAAGAATGTAATTCGCGATTGTGAGATATGCAACTTCGATAGTAGAAATTTTCCAAACGATGAGCGTCTCGGATGACACGATAAATGCGAAGCATATACCACAACATTGAACCACACGAATCTACAAAATCGATACCAATAGAGGTGCCACTACAGTCTTTGACAAACAGGACCTTATGTGGAGATGGCGTACCAATCTGTAATTATTGTAAGTTTGAATGTAATAAAAATTGACGACTATTTCTCAAAAGTTTCAGATAACGAGAACAATCATATCTCAACAATGTCGATGAAAAGATCACAACGAGTTCCATGTTCAATATCGAGAATTCATTTCGTTCACTGCTTTTCGCTTGAACCTATGTTACACAAACTGCTCTTATGATTTTCTTCGGATTGAAAAA</canonical>
            <polymorphic>CGTGCTTTAAAATTATTATATCATAGAGGAGCAAATGCATAAAAATCTTGCACACCAACAGTAAATGATTGATCATTAGAAATGCCCACGTGAGATTCATGAACATCAGGATAGAAAGAGCACCAGGAACGTCTTGCTTGTGCGGAGCTGAGAATCTTGAGGAGCAGATGCAAAAGGTAGACAATAAGAAAAGCAATTGCGACGAGACAAAGAGGCTTGTTTGGCTTACATCGCTAATGTAAGCAGAAACTAATCCGCGCATAGCAGAAACGCCAAGAGGAGCTGGAAACCTTTGCCGAGTATTTGAGAAGGGAAGCTAAGGATCGTGAACGCCAACGCAGGAATTAAGAACGACTCCAACGTGAAATAGATGTGTGAGCTCATCGGGAGAAGGTGTGCGCATAGCTCAGAAACTGCTACACTCGCTGGTCAACAAGCCTAACAACGTCACGGTACAATGATCTACAGCCCAGTGTCGAGTCTTTAAATAGTCTGGTTARTTAATTGACTGAACAATATCTCTCCGTTTGACGCTTCTTGTTTACAGGTGGAATCAGAAGGACTTGAAAATGACTTCTTGGCAGAAGAACGAAGTGAAAGAATGTAATTCGCGATTGTGAGATATGCAACTTCGATAGTAGAAATTTTCCAAACGATGAGCGTCTCGGATGACACGATAAATGCGAAGCATATACCACAACATTGAACCACACGAATCTACAAAATCGATACCAATAGAGGTGCCACTACAGTCTTTGACAAACAGGACCTTATGTGGAGATGGCGTACCAATCTGTAATTATTGTAAGTTTGAATGTAATAAAAATTGACGACTATTTCTCAAAAGTTTCAGATAACGAGAACAATCATATCTCAACAATGTCGATGAAAAGATCACAACGAGTTCCATGTTCAATATCGAGAATTCATTTCGTTCACTGCTTTTCGCTTGAACCTATGTTACACAAACTGCTCTTATGATTTTCTTCGGATTGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACGTGAAATAGATGTGTGAG</pcr_primer_p1>
		<pcr_primer_p2>TTACATTCTTTCACTTCGTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAACGTGAAATAGATGTGTGAGCTCATCGGGAGAAGGTGTGCGCATAGCTCAGAAACTGCTACACTCGCTGGTCAACAAGCCTAACAACGTCACGGTACAATGATCTACAGCCCAGTGTCGAGTCTTTAAATAGTCTGGTTAGTTAATTGACTGAACAATATCTCTCCGTTTGACGCTTCTTGTTTACAGGTGGAATCAGAAGGACTTGAAAATGACTTCTTGGCAGAAGAACGAAGTGAAAGAATGTAA</canonical_amplicon>
		<polymorphic_amplicon>CAACGTGAAATAGATGTGTGAGCTCATCGGGAGAAGGTGTGCGCATAGCTCAGAAACTGCTACACTCGCTGGTCAACAAGCCTAACAACGTCACGGTACAATGATCTACAGCCCAGTGTCGAGTCTTTAAATAGTCTGGTTARTTAATTGACTGAACAATATCTCTCCGTTTGACGCTTCTTGTTTACAGGTGGAATCAGAAGGACTTGAAAATGACTTCTTGGCAGAAGAACGAAGTGAAAGAATGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39233</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>469990</contig_pos>
        <strand>+</strand>
        <context>ATTGTTAACA[A/T]GGGTTTATTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GGAACAGCGGACTCTGAAAATGTTTCATCAAAAACACTGGATTGTTAACA</left_flank>
        <right_flank>GGGTTTATTCGTTGAACTTTGGTTTGTGAACAAGAAGAAAAAAGAAAATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCTTTTCTTATGTATTGTTTGATTTACCCTAATACTCCTGGTTCATATGCGATGCAAGTGAGTAAAATAAATTTTCTGGATAGAAATAAGACTAAAAACCACAATTCAGACCTGCGCTGGCATGAATTCAAAAAAGTAGAGGGACGCCAGAAAAACTAAGAGTAGACACTCAAAACAATGTCTCAGCCTTAAGCTAATTTATCCCTCTGTGCAAGATATCGAAAAGTGGTCAATTTCCAAATTTTCATCTTACTATCAACAACATTTCATCGGTTTATCGGTTTTGATATCTTTCACAGTAATCAAGAGAGACAGAAACTTTTTGTATAATTCCCATCAAACTAAACACACTTAAAGACCTGATTCAGAAACCGGTTTCAAAACACAATTTTTCAACAATAGAATGACCGAAGAATTCAAGAGGACAACCGAGGAAGACTTCTCTGGAGGAACAGCGGACTCTGAAAATGTTTCATCAAAAACACTGGATTGTTAACAAGGGTTTATTCGTTGAACTTTGGTTTGTGAACAAGAAGAAAAAAGAAAATATGACAAAAAAGCAAATTTAGTCGGAGGATTGGGAGAAAATCAAAAAAGAAGGTGAGTCAAAAGTAATAAAATGGGGGTTCGACGAATTTTGGGATCCAGCACTCATTGATCGTGCTCCATGGCCAAGAATGGCTTGATGGTGTGTCCGCGGGCAGAGAACTCTGCCATGGAGAGCGGAAAGTTGCACATCTCGGAGAAGCAATAGCACATCCACATTTTGGCAGCTGGGAGCCCGAATGTGCTTGGCATGTCCTGAAAAATAATATTTGAGAATCATCGAGGAATCTAAGCTTTGAAAAAACGCACCTGGAGGACACAGTCTTGCTCTTTTGGCATGTTGGCGATGGCCGACACCTTCGATGGGTGACGATCTCCACCTCCGAAGGCTTCGGATCCAGTGGCGACGTCGAAGAGCGAAGTGCAGAAGGTCCGGTGATGGAGGGTCTTGAA</canonical>
            <polymorphic>TGCTTTTCTTATGTATTGTTTGATTTACCCTAATACTCCTGGTTCATATGCGATGCAAGTGAGTAAAATAAATTTTCTGGATAGAAATAAGACTAAAAACCACAATTCAGACCTGCGCTGGCATGAATTCAAAAAAGTAGAGGGACGCCAGAAAAACTAAGAGTAGACACTCAAAACAATGTCTCAGCCTTAAGCTAATTTATCCCTCTGTGCAAGATATCGAAAAGTGGTCAATTTCCAAATTTTCATCTTACTATCAACAACATTTCATCGGTTTATCGGTTTTGATATCTTTCACAGTAATCAAGAGAGACAGAAACTTTTTGTATAATTCCCATCAAACTAAACACACTTAAAGACCTGATTCAGAAACCGGTTTCAAAACACAATTTTTCAACAATAGAATGACCGAAGAATTCAAGAGGACAACCGAGGAAGACTTCTCTGGAGGAACAGCGGACTCTGAAAATGTTTCATCAAAAACACTGGATTGTTAACAWGGGTTTATTCGTTGAACTTTGGTTTGTGAACAAGAAGAAAAAAGAAAATATGACAAAAAAGCAAATTTAGTCGGAGGATTGGGAGAAAATCAAAAAAGAAGGTGAGTCAAAAGTAATAAAATGGGGGTTCGACGAATTTTGGGATCCAGCACTCATTGATCGTGCTCCATGGCCAAGAATGGCTTGATGGTGTGTCCGCGGGCAGAGAACTCTGCCATGGAGAGCGGAAAGTTGCACATCTCGGAGAAGCAATAGCACATCCACATTTTGGCAGCTGGGAGCCCGAATGTGCTTGGCATGTCCTGAAAAATAATATTTGAGAATCATCGAGGAATCTAAGCTTTGAAAAAACGCACCTGGAGGACACAGTCTTGCTCTTTTGGCATGTTGGCGATGGCCGACACCTTCGATGGGTGACGATCTCCACCTCCGAAGGCTTCGGATCCAGTGGCGACGTCGAAGAGCGAAGTGCAGAAGGTCCGGTGATGGAGGGTCTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAAACACAATTTTTCAAC</pcr_primer_p1>
		<pcr_primer_p2>CCCCATTTTATTACTTTTGACTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAAACACAATTTTTCAACAATAGAATGACCGAAGAATTCAAGAGGACAACCGAGGAAGACTTCTCTGGAGGAACAGCGGACTCTGAAAATGTTTCATCAAAAACACTGGATTGTTAACAAGGGTTTATTCGTTGAACTTTGGTTTGTGAACAAGAAGAAAAAAGAAAATATGACAAAAAAGCAAATTTAGTCGGAGGATTGGGAGAAAATCAAAAAAGAAGGTGAGTCAAAAGTAATAAAATGGGG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAAACACAATTTTTCAACAATAGAATGACCGAAGAATTCAAGAGGACAACCGAGGAAGACTTCTCTGGAGGAACAGCGGACTCTGAAAATGTTTCATCAAAAACACTGGATTGTTAACAWGGGTTTATTCGTTGAACTTTGGTTTGTGAACAAGAAGAAAAAAGAAAATATGACAAAAAAGCAAATTTAGTCGGAGGATTGGGAGAAAATCAAAAAAGAAGGTGAGTCAAAAGTAATAAAATGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39234</snp_id>
        <super_contig>c013500985.Contig3</super_contig>
        <contig_pos>471785</contig_pos>
        <strand></strand>
        <context>acgaaaaagt[C/T]gccaattaca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGCCAATTTAACAGCGCGTAGATTGCTTTGCTGGATTTCTACGAAAAAGT</left_flank>
        <right_flank>GCCAATTACAAAAGCGATGATCTTGTTTTGTTCAGGACTGTCTGAAATTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGAGAATTGATGAATGCTTCATTTTTCACATAAATTGAGTTATTTGAGGTAAAACTGAATGGCACTTTACTGGAGAAATACCCATACCGATACGTCTCAAGTTTGTATCCTCAATCGAAATGTGTAAAAACATCTTTGGGGTATATCATTTTAGGTTGTTGATTGAAATTTTGAAAATGAGGCTTACAATATTATTAATATTCAGCTCCTAAATCAAAATCATGTTGTTTAGTTCGCGATCCTTCTTTAAATGTATCAAAATATTTTTTAAGTTTTCAGGAACAGCTGTTGTGAAAAGTCTGATGAAAGGTCCTGAGAAAATATTTCAATATTTCAGATTATTGTTTTGCTTTGGCAAGGATCGATTGTACGGAAAATGAAAAATATTATTTTTTATAATTTGAAAATTTTCAGCGGTATTTCATAATTAGTCTGTAGCAAGACTTGCGCCAATTTAACAGCGCGTAGATTGCTTTGCTGGATTTCTACGAAAAAGTCGCCAATTACAAAAGCGATGATCTTGTTTTGTTCAGGACTGTCTGAAATTTTCAGACAATAGTAAAAAGTCTGGACTACTTTTTAGTACTTCAAAATGACTCTCCCATTGAACATTAACAATTTTATTCGGTATTGTAATTTGTTATATGAATTCATCTGATTTACTGATATTTTTACTGCAAAAAATGAGTCTGGTTTCATTCATAAATTGTGTTCATCACTTCAAACATTTCTGCGATTTTGATTTCATTTTTTATGATAAACGTCAACTACGAAGACTATACTCTCTTCCGATTCTTTGCTCGAGCTATCCTTTCATCCTATAATCTGTTATGCTTTTTATAAACTTTGAGAAATGTGTCATACAATGAAACGATATCATTTAGATTTATTGAAATAGGTATCAAGTGAAAAACACGTTTAACATTATCTGGGAAAATCTTCTCAAAGCGAAAAACATCTATCTGAAATCCTAAATTTCTGGTATTATAGTTTAAAAA</canonical>
            <polymorphic>TCTGAGAATTGATGAATGCTTCATTTTTCACATAAATTGAGTTATTTGAGGTAAAACTGAATGGCACTTTACTGGAGAAATACCCATACCGATACGTCTCAAGTTTGTATCCTCAATCGAAATGTGTAAAAACATCTTTGGGGTATATCATTTTAGGTTGTTGATTGAAATTTTGAAAATGAGGCTTACAATATTATTAATATTCAGCTCCTAAATCAAAATCATGTTGTTTAGTTCGCGATCCTTCTTTAAATGTATCAAAATATTTTTTAAGTTTTCAGGAACAGCTGTTGTGAAAAGTCTGATGAAAGGTCCTGAGAAAATATTTCAATATTTCAGATTATTGTTTTGCTTTGGCAAGGATCGATTGTACGGAAAATGAAAAATATTATTTTTTATAATTTGAAAATTTTCAGCGGTATTTCATAATTAGTCTGTAGCAAGACTTGCGCCAATTTAACAGCGCGTAGATTGCTTTGCTGGATTTCTACGAAAAAGTYGCCAATTACAAAAGCGATGATCTTGTTTTGTTCAGGACTGTCTGAAATTTTCAGACAATAGTAAAAAGTCTGGACTACTTTTTAGTACTTCAAAATGACTCTCCCATTGAACATTAACAATTTTATTCGGTATTGTAATTTGTTATATGAATTCATCTGATTTACTGATATTTTTACTGCAAAAAATGAGTCTGGTTTCATTCATAAATTGTGTTCATCACTTCAAACATTTCTGCGATTTTGATTTCATTTTTTATGATAAACGTCAACTACGAAGACTATACTCTCTTCCGATTCTTTGCTCGAGCTATCCTTTCATCCTATAATCTGTTATGCTTTTTATAAACTTTGAGAAATGTGTCATACAATGAAACGATATCATTTAGATTTATTGAAATAGGTATCAAGTGAAAAACACGTTTAACATTATCTGGGAAAATCTTCTCAAAGCGAAAAACATCTATCTGAAATCCTAAATTTCTGGTATTATAGTTTAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCGGTATTTCATAATTAGTCTG</pcr_primer_p1>
		<pcr_primer_p2>AACAAATTACAATACCGAATAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>AGCGGTATTTCATAATTAGTCTGTAGCAAGACTTGCGCCAATTTAACAGCGCGTAGATTGCTTTGCTGGATTTCTACGAAAAAGTCGCCAATTACAAAAGCGATGATCTTGTTTTGTTCAGGACTGTCTGAAATTTTCAGACAATAGTAAAAAGTCTGGACTACTTTTTAGTACTTCAAAATGACTCTCCCATTGAACATTAACAATTTTATTCGGTATTGTAATTTGTT</canonical_amplicon>
		<polymorphic_amplicon>AGCGGTATTTCATAATTAGTCTGTAGCAAGACTTGCGCCAATTTAACAGCGCGTAGATTGCTTTGCTGGATTTCTACGAAAAAGTYGCCAATTACAAAAGCGATGATCTTGTTTTGTTCAGGACTGTCTGAAATTTTCAGACAATAGTAAAAAGTCTGGACTACTTTTTAGTACTTCAAAATGACTCTCCCATTGAACATTAACAATTTTATTCGGTATTGTAATTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39235</snp_id>
        <super_contig>c013501201.Contig1</super_contig>
        <contig_pos>18875</contig_pos>
        <strand></strand>
        <context>gtcaaacttt[T/G]atcgcttgta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ACGAGACACTATAACTGTCTGCGTGTCTTGTCGCGCCTATGTCAAACTTT</left_flank>
        <right_flank>ATCGCTTGTATCTCTCGAACAGAGCTAGCCAGGGAAAAACTGTTAACTTA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCTATCGTGGAAGTTCCATTCGCAAAATTGTGATCCGCGCTCTCGATCTTGTCACAATTGTCGTGCCACCAGCACTTCCGGGTAAGCCATGCTCCTTTGAACTCAATTATCTCGGTTCCTTCAAGAGATATCAAATTTTTTTCAACTGATAAAATGTTTATCATAATATGAGGAACATTTTGTTAGTTGACAGGTTTTTGATATCTTTTACGGGAATCGAGATAATTGAGCTTAAAGCTGCAGAATCTGTAGCGAACATAAAGCTTCTGCTAACAAAAATATTTCTACTGAAACAGTAATCTTTTTTTTGCAGCCGTCATGGGAATCGGAATATTTTATGCTCAACGACGTCTTCGTCAGATGAGCATTTATTGCATATCACCGACAACTATTAATACGTGTGGAGCTATCGACGTGGTTAGTTTTCAGTGGAAGAGACACAGAGAAACGAGACACTATAACTGTCTGCGTGTCTTGTCGCGCCTATGTCAAACTTTTATCGCTTGTATCTCTCGAACAGAGCTAGCCAGGGAAAAACTGTTAACTTAGAAAATGTGTAAAATTTTATGTCAAATAATTTCGCAGTTTACAACTTTTTTGTAGCTCTTTCAGTTTTCGAGATATTGCTCAGCAAACTTTCAGTGTTCTAAAAGAAAGACACACTGAACTTCAACTCCTTATATCCTGAAAATTAGAAGAGCTAGAAAAAAGTGGTCAACTGGTAAAATGCTCCAAATTTTATATCAAATCTTAATATCCTAAATTTCCAGGTATGTTTCGACAAAACGGGTACCCTCACCGAAGACGGACTCGACTTCTACGCGTTACGGGTCGTCGACAACGCCAGAATCGGCGAGAACATTGTTCAGATATCCACCAACGATACGTGTCAAAATGTGGTTCGTGCGATTGCCACGTGTCATACGCTATCCAAGTAAGTGAGCTGGGTTACTGTTGCAATTTGGATTACTGTAGAATCGAGCAGTCTAGCAATGGAA</canonical>
            <polymorphic>ATTCTATCGTGGAAGTTCCATTCGCAAAATTGTGATCCGCGCTCTCGATCTTGTCACAATTGTCGTGCCACCAGCACTTCCGGGTAAGCCATGCTCCTTTGAACTCAATTATCTCGGTTCCTTCAAGAGATATCAAATTTTTTTCAACTGATAAAATGTTTATCATAATATGAGGAACATTTTGTTAGTTGACAGGTTTTTGATATCTTTTACGGGAATCGAGATAATTGAGCTTAAAGCTGCAGAATCTGTAGCGAACATAAAGCTTCTGCTAACAAAAATATTTCTACTGAAACAGTAATCTTTTTTTTGCAGCCGTCATGGGAATCGGAATATTTTATGCTCAACGACGTCTTCGTCAGATGAGCATTTATTGCATATCACCGACAACTATTAATACGTGTGGAGCTATCGACGTGGTTAGTTTTCAGTGGAAGAGACACAGAGAAACGAGACACTATAACTGTCTGCGTGTCTTGTCGCGCCTATGTCAAACTTTKATCGCTTGTATCTCTCGAACAGAGCTAGCCAGGGAAAAACTGTTAACTTAGAAAATGTGTAAAATTTTATGTCAAATAATTTCGCAGTTTACAACTTTTTTGTAGCTCTTTCAGTTTTCGAGATATTGCTCAGCAAACTTTCAGTGTTCTAAAAGAAAGACACACTGAACTTCAACTCCTTATATCCTGAAAATTAGAAGAGCTAGAAAAAAGTGGTCAACTGGTAAAATGCTCCAAATTTTATATCAAATCTTAATATCCTAAATTTCCAGGTATGTTTCGACAAAACGGGTACCCTCACCGAAGACGGACTCGACTTCTACGCGTTACGGGTCGTCGACAACGCCAGAATCGGCGAGAACATTGTTCAGATATCCACCAACGATACGTGTCAAAATGTGGTTCGTGCGATTGCCACGTGTCATACGCTATCCAAGTAAGTGAGCTGGGTTACTGTTGCAATTTGGATTACTGTAGAATCGAGCAGTCTAGCAATGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGACGTGGTTAGTTTTCAGT</pcr_primer_p1>
		<pcr_primer_p2>TAACGCGTAGAAGTCGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>417</pcr_amplicon_size>
		<canonical_amplicon>CGACGTGGTTAGTTTTCAGTGGAAGAGACACAGAGAAACGAGACACTATAACTGTCTGCGTGTCTTGTCGCGCCTATGTCAAACTTTTATCGCTTGTATCTCTCGAACAGAGCTAGCCAGGGAAAAACTGTTAACTTAGAAAATGTGTAAAATTTTATGTCAAATAATTTCGCAGTTTACAACTTTTTTGTAGCTCTTTCAGTTTTCGAGATATTGCTCAGCAAACTTTCAGTGTTCTAAAAGAAAGACACACTGAACTTCAACTCCTTATATCCTGAAAATTAGAAGAGCTAGAAAAAAGTGGTCAACTGGTAAAATGCTCCAAATTTTATATCAAATCTTAATATCCTAAATTTCCAGGTATGTTTCGACAAAACGGGTACCCTCACCGAAGACGGACTCGACTTCTACGCGTTA</canonical_amplicon>
		<polymorphic_amplicon>CGACGTGGTTAGTTTTCAGTGGAAGAGACACAGAGAAACGAGACACTATAACTGTCTGCGTGTCTTGTCGCGCCTATGTCAAACTTTKATCGCTTGTATCTCTCGAACAGAGCTAGCCAGGGAAAAACTGTTAACTTAGAAAATGTGTAAAATTTTATGTCAAATAATTTCGCAGTTTACAACTTTTTTGTAGCTCTTTCAGTTTTCGAGATATTGCTCAGCAAACTTTCAGTGTTCTAAAAGAAAGACACACTGAACTTCAACTCCTTATATCCTGAAAATTAGAAGAGCTAGAAAAAAGTGGTCAACTGGTAAAATGCTCCAAATTTTATATCAAATCTTAATATCCTAAATTTCCAGGTATGTTTCGACAAAACGGGTACCCTCACCGAAGACGGACTCGACTTCTACGCGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39236</snp_id>
        <super_contig>c013501201.Contig1</super_contig>
        <contig_pos>18948</contig_pos>
        <strand></strand>
        <context>aattttatgt[C/T]aaataatttc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCTAGCCAGGGAAAAACTGTTAACTTAGAAAATGTGTAAAATTTTATGT</left_flank>
        <right_flank>AAATAATTTCGCAGTTTACAACTTTTTTGTAGCTCTTTCAGTTTTCGAGA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCACTTCCGGGTAAGCCATGCTCCTTTGAACTCAATTATCTCGGTTCCTTCAAGAGATATCAAATTTTTTTCAACTGATAAAATGTTTATCATAATATGAGGAACATTTTGTTAGTTGACAGGTTTTTGATATCTTTTACGGGAATCGAGATAATTGAGCTTAAAGCTGCAGAATCTGTAGCGAACATAAAGCTTCTGCTAACAAAAATATTTCTACTGAAACAGTAATCTTTTTTTTGCAGCCGTCATGGGAATCGGAATATTTTATGCTCAACGACGTCTTCGTCAGATGAGCATTTATTGCATATCACCGACAACTATTAATACGTGTGGAGCTATCGACGTGGTTAGTTTTCAGTGGAAGAGACACAGAGAAACGAGACACTATAACTGTCTGCGTGTCTTGTCGCGCCTATGTCAAACTTTTATCGCTTGTATCTCTCGAACAGAGCTAGCCAGGGAAAAACTGTTAACTTAGAAAATGTGTAAAATTTTATGTCAAATAATTTCGCAGTTTACAACTTTTTTGTAGCTCTTTCAGTTTTCGAGATATTGCTCAGCAAACTTTCAGTGTTCTAAAAGAAAGACACACTGAACTTCAACTCCTTATATCCTGAAAATTAGAAGAGCTAGAAAAAAGTGGTCAACTGGTAAAATGCTCCAAATTTTATATCAAATCTTAATATCCTAAATTTCCAGGTATGTTTCGACAAAACGGGTACCCTCACCGAAGACGGACTCGACTTCTACGCGTTACGGGTCGTCGACAACGCCAGAATCGGCGAGAACATTGTTCAGATATCCACCAACGATACGTGTCAAAATGTGGTTCGTGCGATTGCCACGTGTCATACGCTATCCAAGTAAGTGAGCTGGGTTACTGTTGCAATTTGGATTACTGTAGAATCGAGCAGTCTAGCAATGGAAGCATTGCGGGGCATATACAATATTAAGATTCTGTGATTGAAACAGTAGAAAATTTCAGAATCAACCACGAGCT</canonical>
            <polymorphic>GCACTTCCGGGTAAGCCATGCTCCTTTGAACTCAATTATCTCGGTTCCTTCAAGAGATATCAAATTTTTTTCAACTGATAAAATGTTTATCATAATATGAGGAACATTTTGTTAGTTGACAGGTTTTTGATATCTTTTACGGGAATCGAGATAATTGAGCTTAAAGCTGCAGAATCTGTAGCGAACATAAAGCTTCTGCTAACAAAAATATTTCTACTGAAACAGTAATCTTTTTTTTGCAGCCGTCATGGGAATCGGAATATTTTATGCTCAACGACGTCTTCGTCAGATGAGCATTTATTGCATATCACCGACAACTATTAATACGTGTGGAGCTATCGACGTGGTTAGTTTTCAGTGGAAGAGACACAGAGAAACGAGACACTATAACTGTCTGCGTGTCTTGTCGCGCCTATGTCAAACTTTTATCGCTTGTATCTCTCGAACAGAGCTAGCCAGGGAAAAACTGTTAACTTAGAAAATGTGTAAAATTTTATGTYAAATAATTTCGCAGTTTACAACTTTTTTGTAGCTCTTTCAGTTTTCGAGATATTGCTCAGCAAACTTTCAGTGTTCTAAAAGAAAGACACACTGAACTTCAACTCCTTATATCCTGAAAATTAGAAGAGCTAGAAAAAAGTGGTCAACTGGTAAAATGCTCCAAATTTTATATCAAATCTTAATATCCTAAATTTCCAGGTATGTTTCGACAAAACGGGTACCCTCACCGAAGACGGACTCGACTTCTACGCGTTACGGGTCGTCGACAACGCCAGAATCGGCGAGAACATTGTTCAGATATCCACCAACGATACGTGTCAAAATGTGGTTCGTGCGATTGCCACGTGTCATACGCTATCCAAGTAAGTGAGCTGGGTTACTGTTGCAATTTGGATTACTGTAGAATCGAGCAGTCTAGCAATGGAAGCATTGCGGGGCATATACAATATTAAGATTCTGTGATTGAAACAGTAGAAAATTTCAGAATCAACCACGAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGACGTGGTTAGTTTTCAGT</pcr_primer_p1>
		<pcr_primer_p2>TAACGCGTAGAAGTCGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>417</pcr_amplicon_size>
		<canonical_amplicon>CGACGTGGTTAGTTTTCAGTGGAAGAGACACAGAGAAACGAGACACTATAACTGTCTGCGTGTCTTGTCGCGCCTATGTCAAACTTTTATCGCTTGTATCTCTCGAACAGAGCTAGCCAGGGAAAAACTGTTAACTTAGAAAATGTGTAAAATTTTATGTCAAATAATTTCGCAGTTTACAACTTTTTTGTAGCTCTTTCAGTTTTCGAGATATTGCTCAGCAAACTTTCAGTGTTCTAAAAGAAAGACACACTGAACTTCAACTCCTTATATCCTGAAAATTAGAAGAGCTAGAAAAAAGTGGTCAACTGGTAAAATGCTCCAAATTTTATATCAAATCTTAATATCCTAAATTTCCAGGTATGTTTCGACAAAACGGGTACCCTCACCGAAGACGGACTCGACTTCTACGCGTTA</canonical_amplicon>
		<polymorphic_amplicon>CGACGTGGTTAGTTTTCAGTGGAAGAGACACAGAGAAACGAGACACTATAACTGTCTGCGTGTCTTGTCGCGCCTATGTCAAACTTTTATCGCTTGTATCTCTCGAACAGAGCTAGCCAGGGAAAAACTGTTAACTTAGAAAATGTGTAAAATTTTATGTYAAATAATTTCGCAGTTTACAACTTTTTTGTAGCTCTTTCAGTTTTCGAGATATTGCTCAGCAAACTTTCAGTGTTCTAAAAGAAAGACACACTGAACTTCAACTCCTTATATCCTGAAAATTAGAAGAGCTAGAAAAAAGTGGTCAACTGGTAAAATGCTCCAAATTTTATATCAAATCTTAATATCCTAAATTTCCAGGTATGTTTCGACAAAACGGGTACCCTCACCGAAGACGGACTCGACTTCTACGCGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39237</snp_id>
        <super_contig>c013501201.Contig1</super_contig>
        <contig_pos>19069</contig_pos>
        <strand></strand>
        <context>atcctgaaaa[T/C]tagaagagct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTGTTCTAAAAGAAAGACACACTGAACTTCAACTCCTTATATCCTGAAAA</left_flank>
        <right_flank>TAGAAGAGCTAGAAAAAAGTGGTCAACTGGTAAAATGCTCCAAATTTTAT</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTTTTTGATATCTTTTACGGGAATCGAGATAATTGAGCTTAAAGCTGCAGAATCTGTAGCGAACATAAAGCTTCTGCTAACAAAAATATTTCTACTGAAACAGTAATCTTTTTTTTGCAGCCGTCATGGGAATCGGAATATTTTATGCTCAACGACGTCTTCGTCAGATGAGCATTTATTGCATATCACCGACAACTATTAATACGTGTGGAGCTATCGACGTGGTTAGTTTTCAGTGGAAGAGACACAGAGAAACGAGACACTATAACTGTCTGCGTGTCTTGTCGCGCCTATGTCAAACTTTTATCGCTTGTATCTCTCGAACAGAGCTAGCCAGGGAAAAACTGTTAACTTAGAAAATGTGTAAAATTTTATGTCAAATAATTTCGCAGTTTACAACTTTTTTGTAGCTCTTTCAGTTTTCGAGATATTGCTCAGCAAACTTTCAGTGTTCTAAAAGAAAGACACACTGAACTTCAACTCCTTATATCCTGAAAATTAGAAGAGCTAGAAAAAAGTGGTCAACTGGTAAAATGCTCCAAATTTTATATCAAATCTTAATATCCTAAATTTCCAGGTATGTTTCGACAAAACGGGTACCCTCACCGAAGACGGACTCGACTTCTACGCGTTACGGGTCGTCGACAACGCCAGAATCGGCGAGAACATTGTTCAGATATCCACCAACGATACGTGTCAAAATGTGGTTCGTGCGATTGCCACGTGTCATACGCTATCCAAGTAAGTGAGCTGGGTTACTGTTGCAATTTGGATTACTGTAGAATCGAGCAGTCTAGCAATGGAAGCATTGCGGGGCATATACAATATTAAGATTCTGTGATTGAAACAGTAGAAAATTTCAGAATCAACCACGAGCTTCATGGAGATCCTTTGGACGTTATTATGTTTGAACAGACTGGATACTCGTTGGAAGAGGATGATTCAGAGTCTCACGAATCCATTGAATCCATTCAGGTAACTTTTTCTTGACAAATTTTG</canonical>
            <polymorphic>GGTTTTTGATATCTTTTACGGGAATCGAGATAATTGAGCTTAAAGCTGCAGAATCTGTAGCGAACATAAAGCTTCTGCTAACAAAAATATTTCTACTGAAACAGTAATCTTTTTTTTGCAGCCGTCATGGGAATCGGAATATTTTATGCTCAACGACGTCTTCGTCAGATGAGCATTTATTGCATATCACCGACAACTATTAATACGTGTGGAGCTATCGACGTGGTTAGTTTTCAGTGGAAGAGACACAGAGAAACGAGACACTATAACTGTCTGCGTGTCTTGTCGCGCCTATGTCAAACTTTTATCGCTTGTATCTCTCGAACAGAGCTAGCCAGGGAAAAACTGTTAACTTAGAAAATGTGTAAAATTTTATGTCAAATAATTTCGCAGTTTACAACTTTTTTGTAGCTCTTTCAGTTTTCGAGATATTGCTCAGCAAACTTTCAGTGTTCTAAAAGAAAGACACACTGAACTTCAACTCCTTATATCCTGAAAAYTAGAAGAGCTAGAAAAAAGTGGTCAACTGGTAAAATGCTCCAAATTTTATATCAAATCTTAATATCCTAAATTTCCAGGTATGTTTCGACAAAACGGGTACCCTCACCGAAGACGGACTCGACTTCTACGCGTTACGGGTCGTCGACAACGCCAGAATCGGCGAGAACATTGTTCAGATATCCACCAACGATACGTGTCAAAATGTGGTTCGTGCGATTGCCACGTGTCATACGCTATCCAAGTAAGTGAGCTGGGTTACTGTTGCAATTTGGATTACTGTAGAATCGAGCAGTCTAGCAATGGAAGCATTGCGGGGCATATACAATATTAAGATTCTGTGATTGAAACAGTAGAAAATTTCAGAATCAACCACGAGCTTCATGGAGATCCTTTGGACGTTATTATGTTTGAACAGACTGGATACTCGTTGGAAGAGGATGATTCAGAGTCTCACGAATCCATTGAATCCATTCAGGTAACTTTTTCTTGACAAATTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>337 197 137 114 90 45 31 27 15 7</canonical_bands>
                <polymorphic_bands>337 197 159 137 90 31 27 15 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGACGTGGTTAGTTTTCAGT</pcr_primer_p1>
		<pcr_primer_p2>TAACGCGTAGAAGTCGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>417</pcr_amplicon_size>
		<canonical_amplicon>CGACGTGGTTAGTTTTCAGTGGAAGAGACACAGAGAAACGAGACACTATAACTGTCTGCGTGTCTTGTCGCGCCTATGTCAAACTTTTATCGCTTGTATCTCTCGAACAGAGCTAGCCAGGGAAAAACTGTTAACTTAGAAAATGTGTAAAATTTTATGTCAAATAATTTCGCAGTTTACAACTTTTTTGTAGCTCTTTCAGTTTTCGAGATATTGCTCAGCAAACTTTCAGTGTTCTAAAAGAAAGACACACTGAACTTCAACTCCTTATATCCTGAAAATTAGAAGAGCTAGAAAAAAGTGGTCAACTGGTAAAATGCTCCAAATTTTATATCAAATCTTAATATCCTAAATTTCCAGGTATGTTTCGACAAAACGGGTACCCTCACCGAAGACGGACTCGACTTCTACGCGTTA</canonical_amplicon>
		<polymorphic_amplicon>CGACGTGGTTAGTTTTCAGTGGAAGAGACACAGAGAAACGAGACACTATAACTGTCTGCGTGTCTTGTCGCGCCTATGTCAAACTTTTATCGCTTGTATCTCTCGAACAGAGCTAGCCAGGGAAAAACTGTTAACTTAGAAAATGTGTAAAATTTTATGTCAAATAATTTCGCAGTTTACAACTTTTTTGTAGCTCTTTCAGTTTTCGAGATATTGCTCAGCAAACTTTCAGTGTTCTAAAAGAAAGACACACTGAACTTCAACTCCTTATATCCTGAAAAYTAGAAGAGCTAGAAAAAAGTGGTCAACTGGTAAAATGCTCCAAATTTTATATCAAATCTTAATATCCTAAATTTCCAGGTATGTTTCGACAAAACGGGTACCCTCACCGAAGACGGACTCGACTTCTACGCGTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39238</snp_id>
        <super_contig>c013501201.Contig1</super_contig>
        <contig_pos>25052</contig_pos>
        <strand>+</strand>
        <context>GATTTATTTT[A/C]AGAATTCGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAATTTATGAAAATTCAAAATTCCCGCCAAACCAATTATTGATTTATTTT</left_flank>
        <right_flank>AGAATTCGTCAAAGACGAAAGGGAGCCTAAACCAACCAGCAGCTCCAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATCAGTTAACAAAATGTTGATATCTCTTACCGAAATTGAGATAATTGAGCTTAAGTTCACAATTTTTCGTTAAATTTTAAAACATGTTATTTTTGTTAGGTAGATACAAAAAATCTAATAGCGACTAAATAACAATGTAAACTATTTAGATTTTTTGAGACAGAAAAAAAAATTATAAATACAATTTCAGGGATGCATTCTTCTGGTGGTCTTCTATCTTTCACCAATACAGTACTTCCTCGGATGCCTCTGGATTTCTCAAGAATTCTGCTTCATCATCCTGGCTGTCGCATTGCTCACCGCCATCATTTCTGTGCTCTATGATAGATGTGTCGATTGGATTTCCACCAAAATTAGGGAAAAGTAGGTTTTGAAATTTTCAAATTTTTTTCGGTTTTAAAGTTTTTTTGAAAAAATATAAATACTGAATTTTGAATACGCTTTCCAAAATTTATGAAAATTCAAAATTCCCGCCAAACCAATTATTGATTTATTTTCAGAATTCGTCAAAGACGAAAGGGAGCCTAAACCAACCAGCAGCTCCAATCTAAAAATAACAAGTTTTAATTTGAATTGTTCTCTATTTCCTCATTCTTTATTTCATGATCATAATTTTATTCTCCCGTTTTTCCACACACATTTCCCAGTGTTTCCATTTTTCCTCATCCTGAAAAATGCACACTTTTTACATGTATCCATTCCATAATTTTTGTATAATGGGTCCCATTTTTTTCTGAATTTTAAATACAAGTTGAAAGTTTTTCTTTTGAAAAATAAACATTTTTATGATATTCCAAAAAATGAAAAAAATTTTCAGGTTTTCAGAAAAAAAACTATATAAGAATTGATTGCAAAATTCGAAAAGAATCAAATGGGTAAAAATTTTTTTCCAAAAAAAAATCCGTTTCAATGTTTTTTTTTATTCACAGAAATTGAAAAATTATTCTCTTTCTGACGGGTAATGAAAAAAAAACTTCTCAAAATTCCGAAAATTCATG</canonical>
            <polymorphic>TTATCAGTTAACAAAATGTTGATATCTCTTACCGAAATTGAGATAATTGAGCTTAAGTTCACAATTTTTCGTTAAATTTTAAAACATGTTATTTTTGTTAGGTAGATACAAAAAATCTAATAGCGACTAAATAACAATGTAAACTATTTAGATTTTTTGAGACAGAAAAAAAAATTATAAATACAATTTCAGGGATGCATTCTTCTGGTGGTCTTCTATCTTTCACCAATACAGTACTTCCTCGGATGCCTCTGGATTTCTCAAGAATTCTGCTTCATCATCCTGGCTGTCGCATTGCTCACCGCCATCATTTCTGTGCTCTATGATAGATGTGTCGATTGGATTTCCACCAAAATTAGGGAAAAGTAGGTTTTGAAATTTTCAAATTTTTTTCGGTTTTAAAGTTTTTTTGAAAAAATATAAATACTGAATTTTGAATACGCTTTCCAAAATTTATGAAAATTCAAAATTCCCGCCAAACCAATTATTGATTTATTTTMAGAATTCGTCAAAGACGAAAGGGAGCCTAAACCAACCAGCAGCTCCAATCTAAAAATAACAAGTTTTAATTTGAATTGTTCTCTATTTCCTCATTCTTTATTTCATGATCATAATTTTATTCTCCCGTTTTTCCACACACATTTCCCAGTGTTTCCATTTTTCCTCATCCTGAAAAATGCACACTTTTTACATGTATCCATTCCATAATTTTTGTATAATGGGTCCCATTTTTTTCTGAATTTTAAATACAAGTTGAAAGTTTTTCTTTTGAAAAATAAACATTTTTATGATATTCCAAAAAATGAAAAAAATTTTCAGGTTTTCAGAAAAAAAACTATATAAGAATTGATTGCAAAATTCGAAAAGAATCAAATGGGTAAAAATTTTTTTCCAAAAAAAAATCCGTTTCAATGTTTTTTTTTATTCACAGAAATTGAAAAATTATTCTCTTTCTGACGGGTAATGAAAAAAAAACTTCTCAAAATTCCGAAAATTCATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>257 244 236 129 89 34 11</canonical_bands>
                <polymorphic_bands>493 244 129 89 34 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTAGGGAAAAGTAGGTTTTG</pcr_primer_p1>
		<pcr_primer_p2>AAAGAATGAGGAAATAGAGAACAA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAATTAGGGAAAAGTAGGTTTTGAAATTTTCAAATTTTTTTCGGTTTTAAAGTTTTTTTGAAAAAATATAAATACTGAATTTTGAATACGCTTTCCAAAATTTATGAAAATTCAAAATTCCCGCCAAACCAATTATTGATTTATTTTCAGAATTCGTCAAAGACGAAAGGGAGCCTAAACCAACCAGCAGCTCCAATCTAAAAATAACAAGTTTTAATTTGAATTGTTCTCTATTTCCTCATTCTTT</canonical_amplicon>
		<polymorphic_amplicon>AAATTAGGGAAAAGTAGGTTTTGAAATTTTCAAATTTTTTTCGGTTTTAAAGTTTTTTTGAAAAAATATAAATACTGAATTTTGAATACGCTTTCCAAAATTTATGAAAATTCAAAATTCCCGCCAAACCAATTATTGATTTATTTTMAGAATTCGTCAAAGACGAAAGGGAGCCTAAACCAACCAGCAGCTCCAATCTAAAAATAACAAGTTTTAATTTGAATTGTTCTCTATTTCCTCATTCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39239</snp_id>
        <super_contig>c013501201.Contig1</super_contig>
        <contig_pos>25159</contig_pos>
        <strand>+</strand>
        <context>TTTATTTCAT[A/G]ATCATAATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAACAAGTTTTAATTTGAATTGTTCTCTATTTCCTCATTCTTTATTTCAT</left_flank>
        <right_flank>ATCATAATTTTATTCTCCCGTTTTTCCACACACATTTCCCAGTGTTTCCA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAAAAAATCTAATAGCGACTAAATAACAATGTAAACTATTTAGATTTTTTGAGACAGAAAAAAAAATTATAAATACAATTTCAGGGATGCATTCTTCTGGTGGTCTTCTATCTTTCACCAATACAGTACTTCCTCGGATGCCTCTGGATTTCTCAAGAATTCTGCTTCATCATCCTGGCTGTCGCATTGCTCACCGCCATCATTTCTGTGCTCTATGATAGATGTGTCGATTGGATTTCCACCAAAATTAGGGAAAAGTAGGTTTTGAAATTTTCAAATTTTTTTCGGTTTTAAAGTTTTTTTGAAAAAATATAAATACTGAATTTTGAATACGCTTTCCAAAATTTATGAAAATTCAAAATTCCCGCCAAACCAATTATTGATTTATTTTCAGAATTCGTCAAAGACGAAAGGGAGCCTAAACCAACCAGCAGCTCCAATCTAAAAATAACAAGTTTTAATTTGAATTGTTCTCTATTTCCTCATTCTTTATTTCATGATCATAATTTTATTCTCCCGTTTTTCCACACACATTTCCCAGTGTTTCCATTTTTCCTCATCCTGAAAAATGCACACTTTTTACATGTATCCATTCCATAATTTTTGTATAATGGGTCCCATTTTTTTCTGAATTTTAAATACAAGTTGAAAGTTTTTCTTTTGAAAAATAAACATTTTTATGATATTCCAAAAAATGAAAAAAATTTTCAGGTTTTCAGAAAAAAAACTATATAAGAATTGATTGCAAAATTCGAAAAGAATCAAATGGGTAAAAATTTTTTTCCAAAAAAAAATCCGTTTCAATGTTTTTTTTTATTCACAGAAATTGAAAAATTATTCTCTTTCTGACGGGTAATGAAAAAAAAACTTCTCAAAATTCCGAAAATTCATGCCCCTCGAAGAGTTGAACTTTAGGACCCACCGTTGGAGGTGCCGCGTTGCTACCAGCTGAGCTACGGTAGCATTTTGTTGAATTTTGTGAAGAAATTCCACAATGAT</canonical>
            <polymorphic>ACAAAAAATCTAATAGCGACTAAATAACAATGTAAACTATTTAGATTTTTTGAGACAGAAAAAAAAATTATAAATACAATTTCAGGGATGCATTCTTCTGGTGGTCTTCTATCTTTCACCAATACAGTACTTCCTCGGATGCCTCTGGATTTCTCAAGAATTCTGCTTCATCATCCTGGCTGTCGCATTGCTCACCGCCATCATTTCTGTGCTCTATGATAGATGTGTCGATTGGATTTCCACCAAAATTAGGGAAAAGTAGGTTTTGAAATTTTCAAATTTTTTTCGGTTTTAAAGTTTTTTTGAAAAAATATAAATACTGAATTTTGAATACGCTTTCCAAAATTTATGAAAATTCAAAATTCCCGCCAAACCAATTATTGATTTATTTTCAGAATTCGTCAAAGACGAAAGGGAGCCTAAACCAACCAGCAGCTCCAATCTAAAAATAACAAGTTTTAATTTGAATTGTTCTCTATTTCCTCATTCTTTATTTCATRATCATAATTTTATTCTCCCGTTTTTCCACACACATTTCCCAGTGTTTCCATTTTTCCTCATCCTGAAAAATGCACACTTTTTACATGTATCCATTCCATAATTTTTGTATAATGGGTCCCATTTTTTTCTGAATTTTAAATACAAGTTGAAAGTTTTTCTTTTGAAAAATAAACATTTTTATGATATTCCAAAAAATGAAAAAAATTTTCAGGTTTTCAGAAAAAAAACTATATAAGAATTGATTGCAAAATTCGAAAAGAATCAAATGGGTAAAAATTTTTTTCCAAAAAAAAATCCGTTTCAATGTTTTTTTTTATTCACAGAAATTGAAAAATTATTCTCTTTCTGACGGGTAATGAAAAAAAAACTTCTCAAAATTCCGAAAATTCATGCCCCTCGAAGAGTTGAACTTTAGGACCCACCGTTGGAGGTGCCGCGTTGCTACCAGCTGAGCTACGGTAGCATTTTGTTGAATTTTGTGAAGAAATTCCACAATGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCATGA</site>
                <isoschizomers>
                    <enzyme>BspHI</enzyme>
                    <enzyme>PagI</enzyme>
                    <enzyme>RcaI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>497 306 110 87</canonical_bands>
                <polymorphic_bands>584 306 110</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>438 342 145 65 10</canonical_bands>
                <polymorphic_bands>438 407 145 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGCTCCAATCTAAAAATAACAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAAAAGAAAAACTTTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>CAGCTCCAATCTAAAAATAACAAGTTTTAATTTGAATTGTTCTCTATTTCCTCATTCTTTATTTCATGATCATAATTTTATTCTCCCGTTTTTCCACACACATTTCCCAGTGTTTCCATTTTTCCTCATCCTGAAAAATGCACACTTTTTACATGTATCCATTCCATAATTTTTGTATAATGGGTCCCATTTTTTTCTGAATTTTAAATACAAGTTGAAAGTTTTTCTTTTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>CAGCTCCAATCTAAAAATAACAAGTTTTAATTTGAATTGTTCTCTATTTCCTCATTCTTTATTTCATRATCATAATTTTATTCTCCCGTTTTTCCACACACATTTCCCAGTGTTTCCATTTTTCCTCATCCTGAAAAATGCACACTTTTTACATGTATCCATTCCATAATTTTTGTATAATGGGTCCCATTTTTTTCTGAATTTTAAATACAAGTTGAAAGTTTTTCTTTTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39240</snp_id>
        <super_contig>c013501201.Contig1</super_contig>
        <contig_pos>25185</contig_pos>
        <strand>+</strand>
        <context>TCCCGTTTTT[C/G]CACACACATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTATTTCCTCATTCTTTATTTCATGATCATAATTTTATTCTCCCGTTTTT</left_flank>
        <right_flank>CACACACATTTCCCAGTGTTTCCATTTTTCCTCATCCTGAAAAATGCACA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAATGTAAACTATTTAGATTTTTTGAGACAGAAAAAAAAATTATAAATACAATTTCAGGGATGCATTCTTCTGGTGGTCTTCTATCTTTCACCAATACAGTACTTCCTCGGATGCCTCTGGATTTCTCAAGAATTCTGCTTCATCATCCTGGCTGTCGCATTGCTCACCGCCATCATTTCTGTGCTCTATGATAGATGTGTCGATTGGATTTCCACCAAAATTAGGGAAAAGTAGGTTTTGAAATTTTCAAATTTTTTTCGGTTTTAAAGTTTTTTTGAAAAAATATAAATACTGAATTTTGAATACGCTTTCCAAAATTTATGAAAATTCAAAATTCCCGCCAAACCAATTATTGATTTATTTTCAGAATTCGTCAAAGACGAAAGGGAGCCTAAACCAACCAGCAGCTCCAATCTAAAAATAACAAGTTTTAATTTGAATTGTTCTCTATTTCCTCATTCTTTATTTCATGATCATAATTTTATTCTCCCGTTTTTCCACACACATTTCCCAGTGTTTCCATTTTTCCTCATCCTGAAAAATGCACACTTTTTACATGTATCCATTCCATAATTTTTGTATAATGGGTCCCATTTTTTTCTGAATTTTAAATACAAGTTGAAAGTTTTTCTTTTGAAAAATAAACATTTTTATGATATTCCAAAAAATGAAAAAAATTTTCAGGTTTTCAGAAAAAAAACTATATAAGAATTGATTGCAAAATTCGAAAAGAATCAAATGGGTAAAAATTTTTTTCCAAAAAAAAATCCGTTTCAATGTTTTTTTTTATTCACAGAAATTGAAAAATTATTCTCTTTCTGACGGGTAATGAAAAAAAAACTTCTCAAAATTCCGAAAATTCATGCCCCTCGAAGAGTTGAACTTTAGGACCCACCGTTGGAGGTGCCGCGTTGCTACCAGCTGAGCTACGGTAGCATTTTGTTGAATTTTGTGAAGAAATTCCACAATGATAAATCATCAGTACTTATAGTATCTCC</canonical>
            <polymorphic>ACAATGTAAACTATTTAGATTTTTTGAGACAGAAAAAAAAATTATAAATACAATTTCAGGGATGCATTCTTCTGGTGGTCTTCTATCTTTCACCAATACAGTACTTCCTCGGATGCCTCTGGATTTCTCAAGAATTCTGCTTCATCATCCTGGCTGTCGCATTGCTCACCGCCATCATTTCTGTGCTCTATGATAGATGTGTCGATTGGATTTCCACCAAAATTAGGGAAAAGTAGGTTTTGAAATTTTCAAATTTTTTTCGGTTTTAAAGTTTTTTTGAAAAAATATAAATACTGAATTTTGAATACGCTTTCCAAAATTTATGAAAATTCAAAATTCCCGCCAAACCAATTATTGATTTATTTTCAGAATTCGTCAAAGACGAAAGGGAGCCTAAACCAACCAGCAGCTCCAATCTAAAAATAACAAGTTTTAATTTGAATTGTTCTCTATTTCCTCATTCTTTATTTCATGATCATAATTTTATTCTCCCGTTTTTSCACACACATTTCCCAGTGTTTCCATTTTTCCTCATCCTGAAAAATGCACACTTTTTACATGTATCCATTCCATAATTTTTGTATAATGGGTCCCATTTTTTTCTGAATTTTAAATACAAGTTGAAAGTTTTTCTTTTGAAAAATAAACATTTTTATGATATTCCAAAAAATGAAAAAAATTTTCAGGTTTTCAGAAAAAAAACTATATAAGAATTGATTGCAAAATTCGAAAAGAATCAAATGGGTAAAAATTTTTTTCCAAAAAAAAATCCGTTTCAATGTTTTTTTTTATTCACAGAAATTGAAAAATTATTCTCTTTCTGACGGGTAATGAAAAAAAAACTTCTCAAAATTCCGAAAATTCATGCCCCTCGAAGAGTTGAACTTTAGGACCCACCGTTGGAGGTGCCGCGTTGCTACCAGCTGAGCTACGGTAGCATTTTGTTGAATTTTGTGAAGAAATTCCACAATGATAAATCATCAGTACTTATAGTATCTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCTCCAATCTAAAAATAACAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAAAAGAAAAACTTTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>CAGCTCCAATCTAAAAATAACAAGTTTTAATTTGAATTGTTCTCTATTTCCTCATTCTTTATTTCATGATCATAATTTTATTCTCCCGTTTTTCCACACACATTTCCCAGTGTTTCCATTTTTCCTCATCCTGAAAAATGCACACTTTTTACATGTATCCATTCCATAATTTTTGTATAATGGGTCCCATTTTTTTCTGAATTTTAAATACAAGTTGAAAGTTTTTCTTTTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>CAGCTCCAATCTAAAAATAACAAGTTTTAATTTGAATTGTTCTCTATTTCCTCATTCTTTATTTCATGATCATAATTTTATTCTCCCGTTTTTSCACACACATTTCCCAGTGTTTCCATTTTTCCTCATCCTGAAAAATGCACACTTTTTACATGTATCCATTCCATAATTTTTGTATAATGGGTCCCATTTTTTTCTGAATTTTAAATACAAGTTGAAAGTTTTTCTTTTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39241</snp_id>
        <super_contig>c013501201.Contig1</super_contig>
        <contig_pos>25247</contig_pos>
        <strand>+</strand>
        <context>TTTTTACATG[A/G]ATCCATTCCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCCAGTGTTTCCATTTTTCCTCATCCTGAAAAATGCACACTTTTTACATG</left_flank>
        <right_flank>ATCCATTCCATAATTTTTGTATAATGGGTCCCATTTTTTTCTGAATTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCATTCTTCTGGTGGTCTTCTATCTTTCACCAATACAGTACTTCCTCGGATGCCTCTGGATTTCTCAAGAATTCTGCTTCATCATCCTGGCTGTCGCATTGCTCACCGCCATCATTTCTGTGCTCTATGATAGATGTGTCGATTGGATTTCCACCAAAATTAGGGAAAAGTAGGTTTTGAAATTTTCAAATTTTTTTCGGTTTTAAAGTTTTTTTGAAAAAATATAAATACTGAATTTTGAATACGCTTTCCAAAATTTATGAAAATTCAAAATTCCCGCCAAACCAATTATTGATTTATTTTCAGAATTCGTCAAAGACGAAAGGGAGCCTAAACCAACCAGCAGCTCCAATCTAAAAATAACAAGTTTTAATTTGAATTGTTCTCTATTTCCTCATTCTTTATTTCATGATCATAATTTTATTCTCCCGTTTTTCCACACACATTTCCCAGTGTTTCCATTTTTCCTCATCCTGAAAAATGCACACTTTTTACATGTATCCATTCCATAATTTTTGTATAATGGGTCCCATTTTTTTCTGAATTTTAAATACAAGTTGAAAGTTTTTCTTTTGAAAAATAAACATTTTTATGATATTCCAAAAAATGAAAAAAATTTTCAGGTTTTCAGAAAAAAAACTATATAAGAATTGATTGCAAAATTCGAAAAGAATCAAATGGGTAAAAATTTTTTTCCAAAAAAAAATCCGTTTCAATGTTTTTTTTTATTCACAGAAATTGAAAAATTATTCTCTTTCTGACGGGTAATGAAAAAAAAACTTCTCAAAATTCCGAAAATTCATGCCCCTCGAAGAGTTGAACTTTAGGACCCACCGTTGGAGGTGCCGCGTTGCTACCAGCTGAGCTACGGTAGCATTTTGTTGAATTTTGTGAAGAAATTCCACAATGATAAATCATCAGTACTTATAGTATCTCCCTAATTAAAAATCTTGATTCGAGAAATTCTTATTTTTTTCTATTTGGCATGTATTTTTCGAA</canonical>
            <polymorphic>TGCATTCTTCTGGTGGTCTTCTATCTTTCACCAATACAGTACTTCCTCGGATGCCTCTGGATTTCTCAAGAATTCTGCTTCATCATCCTGGCTGTCGCATTGCTCACCGCCATCATTTCTGTGCTCTATGATAGATGTGTCGATTGGATTTCCACCAAAATTAGGGAAAAGTAGGTTTTGAAATTTTCAAATTTTTTTCGGTTTTAAAGTTTTTTTGAAAAAATATAAATACTGAATTTTGAATACGCTTTCCAAAATTTATGAAAATTCAAAATTCCCGCCAAACCAATTATTGATTTATTTTCAGAATTCGTCAAAGACGAAAGGGAGCCTAAACCAACCAGCAGCTCCAATCTAAAAATAACAAGTTTTAATTTGAATTGTTCTCTATTTCCTCATTCTTTATTTCATGATCATAATTTTATTCTCCCGTTTTTCCACACACATTTCCCAGTGTTTCCATTTTTCCTCATCCTGAAAAATGCACACTTTTTACATGRATCCATTCCATAATTTTTGTATAATGGGTCCCATTTTTTTCTGAATTTTAAATACAAGTTGAAAGTTTTTCTTTTGAAAAATAAACATTTTTATGATATTCCAAAAAATGAAAAAAATTTTCAGGTTTTCAGAAAAAAAACTATATAAGAATTGATTGCAAAATTCGAAAAGAATCAAATGGGTAAAAATTTTTTTCCAAAAAAAAATCCGTTTCAATGTTTTTTTTTATTCACAGAAATTGAAAAATTATTCTCTTTCTGACGGGTAATGAAAAAAAAACTTCTCAAAATTCCGAAAATTCATGCCCCTCGAAGAGTTGAACTTTAGGACCCACCGTTGGAGGTGCCGCGTTGCTACCAGCTGAGCTACGGTAGCATTTTGTTGAATTTTGTGAAGAAATTCCACAATGATAAATCATCAGTACTTATAGTATCTCCCTAATTAAAAATCTTGATTCGAGAAATTCTTATTTTTTTCTATTTGGCATGTATTTTTCGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>499 490 11</canonical_bands>
                <polymorphic_bands>989 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGCTCCAATCTAAAAATAACAA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCAAAAGAAAAACTTTCAAC</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>CAGCTCCAATCTAAAAATAACAAGTTTTAATTTGAATTGTTCTCTATTTCCTCATTCTTTATTTCATGATCATAATTTTATTCTCCCGTTTTTCCACACACATTTCCCAGTGTTTCCATTTTTCCTCATCCTGAAAAATGCACACTTTTTACATGTATCCATTCCATAATTTTTGTATAATGGGTCCCATTTTTTTCTGAATTTTAAATACAAGTTGAAAGTTTTTCTTTTGAAAA</canonical_amplicon>
		<polymorphic_amplicon>CAGCTCCAATCTAAAAATAACAAGTTTTAATTTGAATTGTTCTCTATTTCCTCATTCTTTATTTCATGATCATAATTTTATTCTCCCGTTTTTCCACACACATTTCCCAGTGTTTCCATTTTTCCTCATCCTGAAAAATGCACACTTTTTACATGRATCCATTCCATAATTTTTGTATAATGGGTCCCATTTTTTTCTGAATTTTAAATACAAGTTGAAAGTTTTTCTTTTGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39242</snp_id>
        <super_contig>c013501201.Contig1</super_contig>
        <contig_pos>25281</contig_pos>
        <strand>+</strand>
        <context>ATGGGTCCCA[A/C]TTTTTTCTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCACACTTTTTACATGTATCCATTCCATAATTTTTGTATAATGGGTCCCA</left_flank>
        <right_flank>TTTTTTCTGAATTTTAAATACAAGTTGAAAGTTTTTCTTTTGAAAAATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACAGTACTTCCTCGGATGCCTCTGGATTTCTCAAGAATTCTGCTTCATCATCCTGGCTGTCGCATTGCTCACCGCCATCATTTCTGTGCTCTATGATAGATGTGTCGATTGGATTTCCACCAAAATTAGGGAAAAGTAGGTTTTGAAATTTTCAAATTTTTTTCGGTTTTAAAGTTTTTTTGAAAAAATATAAATACTGAATTTTGAATACGCTTTCCAAAATTTATGAAAATTCAAAATTCCCGCCAAACCAATTATTGATTTATTTTCAGAATTCGTCAAAGACGAAAGGGAGCCTAAACCAACCAGCAGCTCCAATCTAAAAATAACAAGTTTTAATTTGAATTGTTCTCTATTTCCTCATTCTTTATTTCATGATCATAATTTTATTCTCCCGTTTTTCCACACACATTTCCCAGTGTTTCCATTTTTCCTCATCCTGAAAAATGCACACTTTTTACATGTATCCATTCCATAATTTTTGTATAATGGGTCCCATTTTTTTCTGAATTTTAAATACAAGTTGAAAGTTTTTCTTTTGAAAAATAAACATTTTTATGATATTCCAAAAAATGAAAAAAATTTTCAGGTTTTCAGAAAAAAAACTATATAAGAATTGATTGCAAAATTCGAAAAGAATCAAATGGGTAAAAATTTTTTTCCAAAAAAAAATCCGTTTCAATGTTTTTTTTTATTCACAGAAATTGAAAAATTATTCTCTTTCTGACGGGTAATGAAAAAAAAACTTCTCAAAATTCCGAAAATTCATGCCCCTCGAAGAGTTGAACTTTAGGACCCACCGTTGGAGGTGCCGCGTTGCTACCAGCTGAGCTACGGTAGCATTTTGTTGAATTTTGTGAAGAAATTCCACAATGATAAATCATCAGTACTTATAGTATCTCCCTAATTAAAAATCTTGATTCGAGAAATTCTTATTTTTTTCTATTTGGCATGTATTTTTCGAAAAATCTAGAATGTTTAGTCTTGTCTGAAATTTCT</canonical>
            <polymorphic>TACAGTACTTCCTCGGATGCCTCTGGATTTCTCAAGAATTCTGCTTCATCATCCTGGCTGTCGCATTGCTCACCGCCATCATTTCTGTGCTCTATGATAGATGTGTCGATTGGATTTCCACCAAAATTAGGGAAAAGTAGGTTTTGAAATTTTCAAATTTTTTTCGGTTTTAAAGTTTTTTTGAAAAAATATAAATACTGAATTTTGAATACGCTTTCCAAAATTTATGAAAATTCAAAATTCCCGCCAAACCAATTATTGATTTATTTTCAGAATTCGTCAAAGACGAAAGGGAGCCTAAACCAACCAGCAGCTCCAATCTAAAAATAACAAGTTTTAATTTGAATTGTTCTCTATTTCCTCATTCTTTATTTCATGATCATAATTTTATTCTCCCGTTTTTCCACACACATTTCCCAGTGTTTCCATTTTTCCTCATCCTGAAAAATGCACACTTTTTACATGTATCCATTCCATAATTTTTGTATAATGGGTCCCAMTTTTTTCTGAATTTTAAATACAAGTTGAAAGTTTTTCTTTTGAAAAATAAACATTTTTATGATATTCCAAAAAATGAAAAAAATTTTCAGGTTTTCAGAAAAAAAACTATATAAGAATTGATTGCAAAATTCGAAAAGAATCAAATGGGTAAAAATTTTTTTCCAAAAAAAAATCCGTTTCAATGTTTTTTTTTATTCACAGAAATTGAAAAATTATTCTCTTTCTGACGGGTAATGAAAAAAAAACTTCTCAAAATTCCGAAAATTCATGCCCCTCGAAGAGTTGAACTTTAGGACCCACCGTTGGAGGTGCCGCGTTGCTACCAGCTGAGCTACGGTAGCATTTTGTTGAATTTTGTGAAGAAATTCCACAATGATAAATCATCAGTACTTATAGTATCTCCCTAATTAAAAATCTTGATTCGAGAAATTCTTATTTTTTTCTATTTGGCATGTATTTTTCGAAAAATCTAGAATGTTTAGTCTTGTCTGAAATTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACACATTTCCCAGTGTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTACCCATTTGATTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACACACATTTCCCAGTGTTTCCATTTTTCCTCATCCTGAAAAATGCACACTTTTTACATGTATCCATTCCATAATTTTTGTATAATGGGTCCCATTTTTTTCTGAATTTTAAATACAAGTTGAAAGTTTTTCTTTTGAAAAATAAACATTTTTATGATATTCCAAAAAATGAAAAAAATTTTCAGGTTTTCAGAAAAAAAACTATATAAGAATTGATTGCAAAATTCGAAAAGAATCAAATGGGTAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>ACACACATTTCCCAGTGTTTCCATTTTTCCTCATCCTGAAAAATGCACACTTTTTACATGTATCCATTCCATAATTTTTGTATAATGGGTCCCAMTTTTTTCTGAATTTTAAATACAAGTTGAAAGTTTTTCTTTTGAAAAATAAACATTTTTATGATATTCCAAAAAATGAAAAAAATTTTCAGGTTTTCAGAAAAAAAACTATATAAGAATTGATTGCAAAATTCGAAAAGAATCAAATGGGTAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39243</snp_id>
        <super_contig>c013501201.Contig1</super_contig>
        <contig_pos>25336</contig_pos>
        <strand>+</strand>
        <context>AAATAAACAT[G/T]TTTATGATAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTCTGAATTTTAAATACAAGTTGAAAGTTTTTCTTTTGAAAAATAAACAT</left_flank>
        <right_flank>TTTATGATATTCCAAAAAATGAAAAAAATTTTCAGGTTTTCAGAAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTGTCGCATTGCTCACCGCCATCATTTCTGTGCTCTATGATAGATGTGTCGATTGGATTTCCACCAAAATTAGGGAAAAGTAGGTTTTGAAATTTTCAAATTTTTTTCGGTTTTAAAGTTTTTTTGAAAAAATATAAATACTGAATTTTGAATACGCTTTCCAAAATTTATGAAAATTCAAAATTCCCGCCAAACCAATTATTGATTTATTTTCAGAATTCGTCAAAGACGAAAGGGAGCCTAAACCAACCAGCAGCTCCAATCTAAAAATAACAAGTTTTAATTTGAATTGTTCTCTATTTCCTCATTCTTTATTTCATGATCATAATTTTATTCTCCCGTTTTTCCACACACATTTCCCAGTGTTTCCATTTTTCCTCATCCTGAAAAATGCACACTTTTTACATGTATCCATTCCATAATTTTTGTATAATGGGTCCCATTTTTTTCTGAATTTTAAATACAAGTTGAAAGTTTTTCTTTTGAAAAATAAACATTTTTATGATATTCCAAAAAATGAAAAAAATTTTCAGGTTTTCAGAAAAAAAACTATATAAGAATTGATTGCAAAATTCGAAAAGAATCAAATGGGTAAAAATTTTTTTCCAAAAAAAAATCCGTTTCAATGTTTTTTTTTATTCACAGAAATTGAAAAATTATTCTCTTTCTGACGGGTAATGAAAAAAAAACTTCTCAAAATTCCGAAAATTCATGCCCCTCGAAGAGTTGAACTTTAGGACCCACCGTTGGAGGTGCCGCGTTGCTACCAGCTGAGCTACGGTAGCATTTTGTTGAATTTTGTGAAGAAATTCCACAATGATAAATCATCAGTACTTATAGTATCTCCCTAATTAAAAATCTTGATTCGAGAAATTCTTATTTTTTTCTATTTGGCATGTATTTTTCGAAAAATCTAGAATGTTTAGTCTTGTCTGAAATTTCTGGAAACTCGAGGTGCCAGGTTTATGAGTAGTAGATGAACTAGACGAAATGAAAAT</canonical>
            <polymorphic>GGCTGTCGCATTGCTCACCGCCATCATTTCTGTGCTCTATGATAGATGTGTCGATTGGATTTCCACCAAAATTAGGGAAAAGTAGGTTTTGAAATTTTCAAATTTTTTTCGGTTTTAAAGTTTTTTTGAAAAAATATAAATACTGAATTTTGAATACGCTTTCCAAAATTTATGAAAATTCAAAATTCCCGCCAAACCAATTATTGATTTATTTTCAGAATTCGTCAAAGACGAAAGGGAGCCTAAACCAACCAGCAGCTCCAATCTAAAAATAACAAGTTTTAATTTGAATTGTTCTCTATTTCCTCATTCTTTATTTCATGATCATAATTTTATTCTCCCGTTTTTCCACACACATTTCCCAGTGTTTCCATTTTTCCTCATCCTGAAAAATGCACACTTTTTACATGTATCCATTCCATAATTTTTGTATAATGGGTCCCATTTTTTTCTGAATTTTAAATACAAGTTGAAAGTTTTTCTTTTGAAAAATAAACATKTTTATGATATTCCAAAAAATGAAAAAAATTTTCAGGTTTTCAGAAAAAAAACTATATAAGAATTGATTGCAAAATTCGAAAAGAATCAAATGGGTAAAAATTTTTTTCCAAAAAAAAATCCGTTTCAATGTTTTTTTTTATTCACAGAAATTGAAAAATTATTCTCTTTCTGACGGGTAATGAAAAAAAAACTTCTCAAAATTCCGAAAATTCATGCCCCTCGAAGAGTTGAACTTTAGGACCCACCGTTGGAGGTGCCGCGTTGCTACCAGCTGAGCTACGGTAGCATTTTGTTGAATTTTGTGAAGAAATTCCACAATGATAAATCATCAGTACTTATAGTATCTCCCTAATTAAAAATCTTGATTCGAGAAATTCTTATTTTTTTCTATTTGGCATGTATTTTTCGAAAAATCTAGAATGTTTAGTCTTGTCTGAAATTTCTGGAAACTCGAGGTGCCAGGTTTATGAGTAGTAGATGAACTAGACGAAATGAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACACACATTTCCCAGTGTTT</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTACCCATTTGATTCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACACACATTTCCCAGTGTTTCCATTTTTCCTCATCCTGAAAAATGCACACTTTTTACATGTATCCATTCCATAATTTTTGTATAATGGGTCCCATTTTTTTCTGAATTTTAAATACAAGTTGAAAGTTTTTCTTTTGAAAAATAAACATTTTTATGATATTCCAAAAAATGAAAAAAATTTTCAGGTTTTCAGAAAAAAAACTATATAAGAATTGATTGCAAAATTCGAAAAGAATCAAATGGGTAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>ACACACATTTCCCAGTGTTTCCATTTTTCCTCATCCTGAAAAATGCACACTTTTTACATGTATCCATTCCATAATTTTTGTATAATGGGTCCCATTTTTTTCTGAATTTTAAATACAAGTTGAAAGTTTTTCTTTTGAAAAATAAACATKTTTATGATATTCCAAAAAATGAAAAAAATTTTCAGGTTTTCAGAAAAAAAACTATATAAGAATTGATTGCAAAATTCGAAAAGAATCAAATGGGTAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39244</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>17006</contig_pos>
        <strand>+</strand>
        <context>TCGTTGGTTG[C/T]TGAAGACCTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTGTCTTGCAAATCTGTACTTTTGGCATGTTGTGAAGTTTCGTTGGTTG</left_flank>
        <right_flank>TGAAGACCTGGTCAATTGTGCCTGGTAGAAGACCGACCTGGAATATTAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAATATTTTATCAGTTGACAGAGTTTTTATATATCTCTTGGGAACCGAGAAATTCAGCTCAAACAGGTATTATAGGGTGGGCTTCTATATACGGTAATTTTATGGTAACAATTGAAATACCTAACTTTGAATATAAAAATACTCAATTTGGTTTTCAGAACGTTTTCAGAAGTCCTATATCTACTAACCGATGATACCGGTTGAATTCAGTGCTGTACTATTCGGTGGCTGTGAAATTGCTGTCGTTGCTTCCACATCTCTCCTGATTCTGTTCCGCAGTTTTTGTTTCTTTCCTCCCAGAAATTCTCCCCAAAAATAGTCCTCATCAGAATCATCATCATCTGAAACCTTTCAACTAAAAAGAACACAAAATGTTCTCTCTCACATTCTTCATAATCCCAATCATAGTGCTGCTTGGTTTTCTTGTTTTTCTCATAAACTCCTTTATCCTGTCTTGCAAATCTGTACTTTTGGCATGTTGTGAAGTTTCGTTGGTTGCTGAAGACCTGGTCAATTGTGCCTGGTAGAAGACCGACCTGGAATATTAAGGGATTTCAGTGTGATGTGCTGAGAGTCAATAATAACCTTTCGAAGTTGACCTCGAATATCTTTGTAGCAATCACGACACTGTTTAGTTTTGCAGTTGTTCAGTGTCGCCGTCTGGACTATAAAGAATATTGAAAACATAAATAATTGTATGATACCGTTTGCTGTGATTTCTCTTGTCTGGTTATAGTGAGATCTGGGAATGCGACAATAGCTTCTTCAAGACTTGCCGCTTGCAGTCTGGAGTCATATGGAATACAATTTGGAGGACTTGTTGGTGTGCTTGGAGGAAGACATTGACACTGGAATACGAAGAATTGGAATAGGAAGAACAAGCTTTTCAAAGTTCTACTTAAGTAGAAGTTTAAAGAGCTTGTAGTGAGAACTATCTTTAAAATTCGTTGAGGCGTTTCATTAAACATTTCAGAGGCTCAAAACGTCATGGGGTTGATT</canonical>
            <polymorphic>CCAATATTTTATCAGTTGACAGAGTTTTTATATATCTCTTGGGAACCGAGAAATTCAGCTCAAACAGGTATTATAGGGTGGGCTTCTATATACGGTAATTTTATGGTAACAATTGAAATACCTAACTTTGAATATAAAAATACTCAATTTGGTTTTCAGAACGTTTTCAGAAGTCCTATATCTACTAACCGATGATACCGGTTGAATTCAGTGCTGTACTATTCGGTGGCTGTGAAATTGCTGTCGTTGCTTCCACATCTCTCCTGATTCTGTTCCGCAGTTTTTGTTTCTTTCCTCCCAGAAATTCTCCCCAAAAATAGTCCTCATCAGAATCATCATCATCTGAAACCTTTCAACTAAAAAGAACACAAAATGTTCTCTCTCACATTCTTCATAATCCCAATCATAGTGCTGCTTGGTTTTCTTGTTTTTCTCATAAACTCCTTTATCCTGTCTTGCAAATCTGTACTTTTGGCATGTTGTGAAGTTTCGTTGGTTGYTGAAGACCTGGTCAATTGTGCCTGGTAGAAGACCGACCTGGAATATTAAGGGATTTCAGTGTGATGTGCTGAGAGTCAATAATAACCTTTCGAAGTTGACCTCGAATATCTTTGTAGCAATCACGACACTGTTTAGTTTTGCAGTTGTTCAGTGTCGCCGTCTGGACTATAAAGAATATTGAAAACATAAATAATTGTATGATACCGTTTGCTGTGATTTCTCTTGTCTGGTTATAGTGAGATCTGGGAATGCGACAATAGCTTCTTCAAGACTTGCCGCTTGCAGTCTGGAGTCATATGGAATACAATTTGGAGGACTTGTTGGTGTGCTTGGAGGAAGACATTGACACTGGAATACGAAGAATTGGAATAGGAAGAACAAGCTTTTCAAAGTTCTACTTAAGTAGAAGTTTAAAGAGCTTGTAGTGAGAACTATCTTTAAAATTCGTTGAGGCGTTTCATTAAACATTTCAGAGGCTCAAAACGTCATGGGGTTGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTTTCAACTAAAAAGAACACAA</pcr_primer_p1>
		<pcr_primer_p2>CAACTTCGAAAGGTTATTATTGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTTTCAACTAAAAAGAACACAAAATGTTCTCTCTCACATTCTTCATAATCCCAATCATAGTGCTGCTTGGTTTTCTTGTTTTTCTCATAAACTCCTTTATCCTGTCTTGCAAATCTGTACTTTTGGCATGTTGTGAAGTTTCGTTGGTTGCTGAAGACCTGGTCAATTGTGCCTGGTAGAAGACCGACCTGGAATATTAAGGGATTTCAGTGTGATGTGCTGAGAGTCAATAATAACCTTTCGAAGTTG</canonical_amplicon>
		<polymorphic_amplicon>CCTTTCAACTAAAAAGAACACAAAATGTTCTCTCTCACATTCTTCATAATCCCAATCATAGTGCTGCTTGGTTTTCTTGTTTTTCTCATAAACTCCTTTATCCTGTCTTGCAAATCTGTACTTTTGGCATGTTGTGAAGTTTCGTTGGTTGYTGAAGACCTGGTCAATTGTGCCTGGTAGAAGACCGACCTGGAATATTAAGGGATTTCAGTGTGATGTGCTGAGAGTCAATAATAACCTTTCGAAGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39245</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>84377</contig_pos>
        <strand></strand>
        <context>aattggtaga[G/A]atataatttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACGAGTGTATCCTTAGACATAAGTGTCTTGGAAGCATGAAAATTGGTAGA</left_flank>
        <right_flank>ATATAATTTTTGTTTGATTTCAAACTACTGAAGTTTTCAAAGCGATTCCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTTGACCACATGTTGGCATATTTCAAAGGAATCGAGATAATTGACCCAAACGAAGTGCTCTTGGCTGTGACCTGTGATGACTTCACTTTTGGACAGGATGTATGTCTTGAATCTTATAGCTTTTTCGGATTTTAAAATTCTATTTTCCAGGACACCAACAACGACCACTGTCGAGTGGACCAACACCACAGACGGCGGCGCCAAGCAGTGAATGGTTACAGGGATATGGAATGGTCCGTCGCAAGAACCTTCCGTCGAGTTCAGCCCATAAGATTTCATTGGAATAACGCTTTTGATTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTCTACAAAGTCTGTCACCGTGACAACGGGGTTCATAACAATCAACAAATTTTTGGCTGAAAGCATTTTTTGGGGTTTTTGTACAGGGTGGCGCAGAATCACCCGGGCTGATAAAAACGAGTGTATCCTTAGACATAAGTGTCTTGGAAGCATGAAAATTGGTAGAGATATAATTTTTGTTTGATTTCAAACTACTGAAGTTTTCAAAGCGATTCCTCATGTCAAGGTGTTCCTATGATTGCCCAAAAAAATAATAGCTTGTTTTTCCTTGCCCACAGTTTTTTTTCATGAGATGAAGCAACTTTGACAAGTGAAAACTCAGCTCAAAATTGATCAAAAAATTTGAAATTTGGCTTTAAAAAATTTAAGCCCAGTACAACGTTCTGCTCCAGTTTTACCTCCAGAATCCAAAAATTGAATGTCACGAAAATCCAATTATTCCCCCATGCATGAAATTTTCTGAGCCTATTATCATCTTCAGTCTTTATCTTTGTCTTGGCATCTTTTTTCCTTTTTTTTCACCTCGAATTTTGCCACCTTCCTTTGAAACCGAAACCTCGGATTGAGTTTCACCAAAAAAATATTCTTCTTCTCTTCTCCTCTTTCCCTCCATACCTTCCGCCGAAAAGAAACATTTCCAAAACCCTGGTCAACTCCAACTTTTTCC</canonical>
            <polymorphic>CAGTTGACCACATGTTGGCATATTTCAAAGGAATCGAGATAATTGACCCAAACGAAGTGCTCTTGGCTGTGACCTGTGATGACTTCACTTTTGGACAGGATGTATGTCTTGAATCTTATAGCTTTTTCGGATTTTAAAATTCTATTTTCCAGGACACCAACAACGACCACTGTCGAGTGGACCAACACCACAGACGGCGGCGCCAAGCAGTGAATGGTTACAGGGATATGGAATGGTCCGTCGCAAGAACCTTCCGTCGAGTTCAGCCCATAAGATTTCATTGGAATAACGCTTTTGATTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTCTACAAAGTCTGTCACCGTGACAACGGGGTTCATAACAATCAACAAATTTTTGGCTGAAAGCATTTTTTGGGGTTTTTGTACAGGGTGGCGCAGAATCACCCGGGCTGATAAAAACGAGTGTATCCTTAGACATAAGTGTCTTGGAAGCATGAAAATTGGTAGARATATAATTTTTGTTTGATTTCAAACTACTGAAGTTTTCAAAGCGATTCCTCATGTCAAGGTGTTCCTATGATTGCCCAAAAAAATAATAGCTTGTTTTTCCTTGCCCACAGTTTTTTTTCATGAGATGAAGCAACTTTGACAAGTGAAAACTCAGCTCAAAATTGATCAAAAAATTTGAAATTTGGCTTTAAAAAATTTAAGCCCAGTACAACGTTCTGCTCCAGTTTTACCTCCAGAATCCAAAAATTGAATGTCACGAAAATCCAATTATTCCCCCATGCATGAAATTTTCTGAGCCTATTATCATCTTCAGTCTTTATCTTTGTCTTGGCATCTTTTTTCCTTTTTTTTCACCTCGAATTTTGCCACCTTCCTTTGAAACCGAAACCTCGGATTGAGTTTCACCAAAAAAATATTCTTCTTCTCTTCTCCTCTTTCCCTCCATACCTTCCGCCGAAAAGAAACATTTCCAAAACCCTGGTCAACTCCAACTTTTTCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAAATTTTTGGCTGAAAG</pcr_primer_p1>
		<pcr_primer_p2>AACGTTGTACTGGGCTTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>340</pcr_amplicon_size>
		<canonical_amplicon>AACAAATTTTTGGCTGAAAGCATTTTTTGGGGTTTTTGTACAGGGTGGCGCAGAATCACCCGGGCTGATAAAAACGAGTGTATCCTTAGACATAAGTGTCTTGGAAGCATGAAAATTGGTAGAGATATAATTTTTGTTTGATTTCAAACTACTGAAGTTTTCAAAGCGATTCCTCATGTCAAGGTGTTCCTATGATTGCCCAAAAAAATAATAGCTTGTTTTTCCTTGCCCACAGTTTTTTTTCATGAGATGAAGCAACTTTGACAAGTGAAAACTCAGCTCAAAATTGATCAAAAAATTTGAAATTTGGCTTTAAAAAATTTAAGCCCAGTACAACGTT</canonical_amplicon>
		<polymorphic_amplicon>AACAAATTTTTGGCTGAAAGCATTTTTTGGGGTTTTTGTACAGGGTGGCGCAGAATCACCCGGGCTGATAAAAACGAGTGTATCCTTAGACATAAGTGTCTTGGAAGCATGAAAATTGGTAGARATATAATTTTTGTTTGATTTCAAACTACTGAAGTTTTCAAAGCGATTCCTCATGTCAAGGTGTTCCTATGATTGCCCAAAAAAATAATAGCTTGTTTTTCCTTGCCCACAGTTTTTTTTCATGAGATGAAGCAACTTTGACAAGTGAAAACTCAGCTCAAAATTGATCAAAAAATTTGAAATTTGGCTTTAAAAAATTTAAGCCCAGTACAACGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39246</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>84462</contig_pos>
        <strand></strand>
        <context>cccaaaaaaa[T/G]aatagcttgt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TTTCAAAGCGATTCCTCATGTCAAGGTGTTCCTATGATTGCCCAAAAAAA</left_flank>
        <right_flank>AATAGCTTGTTTTTCCTTGCCCACAGTTTTTTTTCATGAGATGAAGCAAC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTTTTGGACAGGATGTATGTCTTGAATCTTATAGCTTTTTCGGATTTTAAAATTCTATTTTCCAGGACACCAACAACGACCACTGTCGAGTGGACCAACACCACAGACGGCGGCGCCAAGCAGTGAATGGTTACAGGGATATGGAATGGTCCGTCGCAAGAACCTTCCGTCGAGTTCAGCCCATAAGATTTCATTGGAATAACGCTTTTGATTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTCTACAAAGTCTGTCACCGTGACAACGGGGTTCATAACAATCAACAAATTTTTGGCTGAAAGCATTTTTTGGGGTTTTTGTACAGGGTGGCGCAGAATCACCCGGGCTGATAAAAACGAGTGTATCCTTAGACATAAGTGTCTTGGAAGCATGAAAATTGGTAGAGATATAATTTTTGTTTGATTTCAAACTACTGAAGTTTTCAAAGCGATTCCTCATGTCAAGGTGTTCCTATGATTGCCCAAAAAAATAATAGCTTGTTTTTCCTTGCCCACAGTTTTTTTTCATGAGATGAAGCAACTTTGACAAGTGAAAACTCAGCTCAAAATTGATCAAAAAATTTGAAATTTGGCTTTAAAAAATTTAAGCCCAGTACAACGTTCTGCTCCAGTTTTACCTCCAGAATCCAAAAATTGAATGTCACGAAAATCCAATTATTCCCCCATGCATGAAATTTTCTGAGCCTATTATCATCTTCAGTCTTTATCTTTGTCTTGGCATCTTTTTTCCTTTTTTTTCACCTCGAATTTTGCCACCTTCCTTTGAAACCGAAACCTCGGATTGAGTTTCACCAAAAAAATATTCTTCTTCTCTTCTCCTCTTTCCCTCCATACCTTCCGCCGAAAAGAAACATTTCCAAAACCCTGGTCAACTCCAACTTTTTCCTTTTCTTCTTCTTCTTTTTGTCCTCCAAAACTTTCGTGGTCTCTCATACCAAAATCGGGTAATGAACTCGAACTCAGTGACGACG</canonical>
            <polymorphic>CACTTTTGGACAGGATGTATGTCTTGAATCTTATAGCTTTTTCGGATTTTAAAATTCTATTTTCCAGGACACCAACAACGACCACTGTCGAGTGGACCAACACCACAGACGGCGGCGCCAAGCAGTGAATGGTTACAGGGATATGGAATGGTCCGTCGCAAGAACCTTCCGTCGAGTTCAGCCCATAAGATTTCATTGGAATAACGCTTTTGATTTCTTATGTTCACCTATTTTTGTATTTTAATTATGTCTACAAAGTCTGTCACCGTGACAACGGGGTTCATAACAATCAACAAATTTTTGGCTGAAAGCATTTTTTGGGGTTTTTGTACAGGGTGGCGCAGAATCACCCGGGCTGATAAAAACGAGTGTATCCTTAGACATAAGTGTCTTGGAAGCATGAAAATTGGTAGAGATATAATTTTTGTTTGATTTCAAACTACTGAAGTTTTCAAAGCGATTCCTCATGTCAAGGTGTTCCTATGATTGCCCAAAAAAAKAATAGCTTGTTTTTCCTTGCCCACAGTTTTTTTTCATGAGATGAAGCAACTTTGACAAGTGAAAACTCAGCTCAAAATTGATCAAAAAATTTGAAATTTGGCTTTAAAAAATTTAAGCCCAGTACAACGTTCTGCTCCAGTTTTACCTCCAGAATCCAAAAATTGAATGTCACGAAAATCCAATTATTCCCCCATGCATGAAATTTTCTGAGCCTATTATCATCTTCAGTCTTTATCTTTGTCTTGGCATCTTTTTTCCTTTTTTTTCACCTCGAATTTTGCCACCTTCCTTTGAAACCGAAACCTCGGATTGAGTTTCACCAAAAAAATATTCTTCTTCTCTTCTCCTCTTTCCCTCCATACCTTCCGCCGAAAAGAAACATTTCCAAAACCCTGGTCAACTCCAACTTTTTCCTTTTCTTCTTCTTCTTTTTGTCCTCCAAAACTTTCGTGGTCTCTCATACCAAAATCGGGTAATGAACTCGAACTCAGTGACGACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAAATTTTTGGCTGAAAG</pcr_primer_p1>
		<pcr_primer_p2>AACGTTGTACTGGGCTTAAAT</pcr_primer_p2>
		<pcr_amplicon_size>340</pcr_amplicon_size>
		<canonical_amplicon>AACAAATTTTTGGCTGAAAGCATTTTTTGGGGTTTTTGTACAGGGTGGCGCAGAATCACCCGGGCTGATAAAAACGAGTGTATCCTTAGACATAAGTGTCTTGGAAGCATGAAAATTGGTAGAGATATAATTTTTGTTTGATTTCAAACTACTGAAGTTTTCAAAGCGATTCCTCATGTCAAGGTGTTCCTATGATTGCCCAAAAAAATAATAGCTTGTTTTTCCTTGCCCACAGTTTTTTTTCATGAGATGAAGCAACTTTGACAAGTGAAAACTCAGCTCAAAATTGATCAAAAAATTTGAAATTTGGCTTTAAAAAATTTAAGCCCAGTACAACGTT</canonical_amplicon>
		<polymorphic_amplicon>AACAAATTTTTGGCTGAAAGCATTTTTTGGGGTTTTTGTACAGGGTGGCGCAGAATCACCCGGGCTGATAAAAACGAGTGTATCCTTAGACATAAGTGTCTTGGAAGCATGAAAATTGGTAGAGATATAATTTTTGTTTGATTTCAAACTACTGAAGTTTTCAAAGCGATTCCTCATGTCAAGGTGTTCCTATGATTGCCCAAAAAAAKAATAGCTTGTTTTTCCTTGCCCACAGTTTTTTTTCATGAGATGAAGCAACTTTGACAAGTGAAAACTCAGCTCAAAATTGATCAAAAAATTTGAAATTTGGCTTTAAAAAATTTAAGCCCAGTACAACGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39247</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>87524</contig_pos>
        <strand>+</strand>
        <context>ACCGAGGACA[C/T]GATGTAATGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTCTCGCATGTGACAGACGCGGATACTCACCACTATACTACCGAGGACA</left_flank>
        <right_flank>GATGTAATGAAGAACTAGATGACATAGAGAAAGAGCGTACGTAACGTTTC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATTAACCCGAATTTTTATTTCATGAATATTGATAGAACAATAAATGTAAAAACAACAAAAAATGGAACAACAGATAGGGAGAAATGGGGAATAAAAGAATATAACCCGTGCAGCACACAGAAATTAGAAAAACGGAAGGAAAAAGTGACGAAAAAGGCATCACTTGTCTTCAGGGAATTCCTAGGATGAAAGTCGCAGACGAAGACACTGGCATACATCAAAAATGGATACAAAACGACAAAATGCGGGCGTTTCCTGAATCATTGGTTCAAAGATTAGCTGACTTGTGTTCTTCTCGACAAACAATTCCGTTCGCACGAGCATGCTCAATGGATCCGAGTTCTTGTAGGAACCACTGACTGTGAACTCGAAGTTGAGATACTGAAAAAGATAAATCATTAAATTAAAAATATGAAAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCACTATACTACCGAGGACACGATGTAATGAAGAACTAGATGACATAGAGAAAGAGCGTACGTAACGTTTCTTTTTGTTAGAGAACGAGAGAAAATATTCACGTAACTTTACACTAATACATAGCAAGAGCTACTTTTTTTGAATTAGCGACCTCTTTTTTGAAAAACAAAATAATTTTTAAAATCTATAACCTACATTCAGTTCTGAGTTCTTCTTATGCTTTTCCTGCATCATTTCTATAGCCGTTGCGTTCTTTTTCGTGCGGAGACCAAATCGACTGTACGGATTGATCGCCATCTCTTTGAAATCATTGCCGGTTTCCAAACTATTAACATCTATGCAATCATCCAGCTTCTCCGTTTTCAGCCAGCTTTTCAGTGTATCAAATTGATCCTGCAAGAAGTCCAATGTTTCTCGTAGTCTGCGCTCTCTTCTCCGTTTTGCCCGCCGCATTCATCTTGACCCTCTACCATCATGACGAAACGTGGCCTTGTGGCCTAATGGATAAGGCGTCTGACTT</canonical>
            <polymorphic>ACATTAACCCGAATTTTTATTTCATGAATATTGATAGAACAATAAATGTAAAAACAACAAAAAATGGAACAACAGATAGGGAGAAATGGGGAATAAAAGAATATAACCCGTGCAGCACACAGAAATTAGAAAAACGGAAGGAAAAAGTGACGAAAAAGGCATCACTTGTCTTCAGGGAATTCCTAGGATGAAAGTCGCAGACGAAGACACTGGCATACATCAAAAATGGATACAAAACGACAAAATGCGGGCGTTTCCTGAATCATTGGTTCAAAGATTAGCTGACTTGTGTTCTTCTCGACAAACAATTCCGTTCGCACGAGCATGCTCAATGGATCCGAGTTCTTGTAGGAACCACTGACTGTGAACTCGAAGTTGAGATACTGAAAAAGATAAATCATTAAATTAAAAATATGAAAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCACTATACTACCGAGGACAYGATGTAATGAAGAACTAGATGACATAGAGAAAGAGCGTACGTAACGTTTCTTTTTGTTAGAGAACGAGAGAAAATATTCACGTAACTTTACACTAATACATAGCAAGAGCTACTTTTTTTGAATTAGCGACCTCTTTTTTGAAAAACAAAATAATTTTTAAAATCTATAACCTACATTCAGTTCTGAGTTCTTCTTATGCTTTTCCTGCATCATTTCTATAGCCGTTGCGTTCTTTTTCGTGCGGAGACCAAATCGACTGTACGGATTGATCGCCATCTCTTTGAAATCATTGCCGGTTTCCAAACTATTAACATCTATGCAATCATCCAGCTTCTCCGTTTTCAGCCAGCTTTTCAGTGTATCAAATTGATCCTGCAAGAAGTCCAATGTTTCTCGTAGTCTGCGCTCTCTTCTCCGTTTTGCCCGCCGCATTCATCTTGACCCTCTACCATCATGACGAAACGTGGCCTTGTGGCCTAATGGATAAGGCGTCTGACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>150 118 112 107 96 82 81 45 38 30 28 25 17 17 15 12 9 8 5 3 2</canonical_bands>
                <polymorphic_bands>150 118 112 107 98 96 82 45 38 30 28 25 17 15 12 9 8 5 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACTCGAAGTTGAGATACTGAAA</pcr_primer_p1>
		<pcr_primer_p2>AAAGTAGCTCTTGCTATGTATTAGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AACTCGAAGTTGAGATACTGAAAAAGATAAATCATTAAATTAAAAATATGAAAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCACTATACTACCGAGGACACGATGTAATGAAGAACTAGATGACATAGAGAAAGAGCGTACGTAACGTTTCTTTTTGTTAGAGAACGAGAGAAAATATTCACGTAACTTTACACTAATACATAGCAAGAGCTACTTT</canonical_amplicon>
		<polymorphic_amplicon>AACTCGAAGTTGAGATACTGAAAAAGATAAATCATTAAATTAAAAATATGAAAAAGATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCACTATACTACCGAGGACAYGATGTAATGAAGAACTAGATGACATAGAGAAAGAGCGTACGTAACGTTTCTTTTTGTTAGAGAACGAGAGAAAATATTCACGTAACTTTACACTAATACATAGCAAGAGCTACTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39248</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>106817</contig_pos>
        <strand>+</strand>
        <context>GACAAGTACG[A/G]GACACTAAGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAAGAATAATATAACTCAGTTGTTCTACTTTTCAACGCTTGACAAGTACG</left_flank>
        <right_flank>GACACTAAGCGCCAAGAAAAAAACAGACCACAAGCAAAAAAAAACAGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGACGTTTTTTATATTGGGCCCTATTTGGCTGTTTTTTTTCTATTTTATAAAAAAATAAATTGAAGATTTATAAGAATTACACAAAATTAGACAGAAACAAGCGAAAAAATGAGAGAAATTTAAGAAAATTCGATAAATGTTGAGGTACTGTATTAAAGGCGCGTGCAATAATTTGAAAAATACAATAAGGTTCTCTCTGTGGGAGCTAAGCTTCGCCCACCGTTGTTTTCTCGGCCGCAACGTACATTGATTTCGGACAAGAGTAATACTTTATAAGGAAATTAAGCTGATTATTCATGAGATTCTGAAGAATTTTGACGAAAACGAGCAAAAATATGAAGGAAATAGGCAAAAATAAACTAATTTCGAGATACGGTATCGTTCGAAAAACCGTAGTTGTTTTCGCTACCGGACCGACAATGCGCCTTCAAAAAAAATTTCGGCCGGACAAGAATAATATAACTCAGTTGTTCTACTTTTCAACGCTTGACAAGTACGGGACACTAAGCGCCAAGAAAAAAACAGACCACAAGCAAAAAAAAACAGAAAAAAGGGACGTCTGGGTAGGCGAAAAGCCGAAGAAAAAAGGTAGTTCTTTTTCATCATCTGCTCCTTCGTCTTCCTTCCTTCCTGCCTTCCTTCCAGCTGGTGGGGAGTCGATTCCGAGAAGTGTAATGGCTCTCTCTGGGTGCACACAGACCGATTCCTCTCCGCGAGACACGGGTAGTCATCAGAGAGATAGACGGGACCATTAGAAGCGCAGACACATAGAGTGACATAAGAGAGAAGGAATAAAACAGGGACATAAAGCGTGGTGTCTACCAAAAGTGTACTACCTCTGGACCGTCTCCCGCTGGCTGAATGCCAGAAAGACTGATCGTTGCAAAAAAGCGTTGGGTTAGAAAACAAACAAAGAACGTTTTTTCTTTGAAAGCGACGAGCAATCGAATCTTTTGTTTATTGAGAAAATTGCACTTTCATGAAAAAAATCGCAACATT</canonical>
            <polymorphic>GGACGTTTTTTATATTGGGCCCTATTTGGCTGTTTTTTTTCTATTTTATAAAAAAATAAATTGAAGATTTATAAGAATTACACAAAATTAGACAGAAACAAGCGAAAAAATGAGAGAAATTTAAGAAAATTCGATAAATGTTGAGGTACTGTATTAAAGGCGCGTGCAATAATTTGAAAAATACAATAAGGTTCTCTCTGTGGGAGCTAAGCTTCGCCCACCGTTGTTTTCTCGGCCGCAACGTACATTGATTTCGGACAAGAGTAATACTTTATAAGGAAATTAAGCTGATTATTCATGAGATTCTGAAGAATTTTGACGAAAACGAGCAAAAATATGAAGGAAATAGGCAAAAATAAACTAATTTCGAGATACGGTATCGTTCGAAAAACCGTAGTTGTTTTCGCTACCGGACCGACAATGCGCCTTCAAAAAAAATTTCGGCCGGACAAGAATAATATAACTCAGTTGTTCTACTTTTCAACGCTTGACAAGTACGRGACACTAAGCGCCAAGAAAAAAACAGACCACAAGCAAAAAAAAACAGAAAAAAGGGACGTCTGGGTAGGCGAAAAGCCGAAGAAAAAAGGTAGTTCTTTTTCATCATCTGCTCCTTCGTCTTCCTTCCTTCCTGCCTTCCTTCCAGCTGGTGGGGAGTCGATTCCGAGAAGTGTAATGGCTCTCTCTGGGTGCACACAGACCGATTCCTCTCCGCGAGACACGGGTAGTCATCAGAGAGATAGACGGGACCATTAGAAGCGCAGACACATAGAGTGACATAAGAGAGAAGGAATAAAACAGGGACATAAAGCGTGGTGTCTACCAAAAGTGTACTACCTCTGGACCGTCTCCCGCTGGCTGAATGCCAGAAAGACTGATCGTTGCAAAAAAGCGTTGGGTTAGAAAACAAACAAAGAACGTTTTTTCTTTGAAAGCGACGAGCAATCGAATCTTTTGTTTATTGAGAAAATTGCACTTTCATGAAAAAAATCGCAACATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAATCACCAAATCAGAAC</pcr_primer_p1>
		<pcr_primer_p2>CAGATGATGAAAAAGAACTACCT</pcr_primer_p2>
		<pcr_amplicon_size>910</pcr_amplicon_size>
		<canonical_amplicon>GGGACACTAAGCGCCAAGAAAAAAACAGACCACAAGCAAAAAAAAACAGAAAAAAGGGACGTCTGGGTAGGCGAAAAGCCGAAGAAAAAAGGTAGTTCTTTTTCATCATCTG</canonical_amplicon>
		<polymorphic_amplicon>GRGACACTAAGCGCCAAGAAAAAAACAGACCACAAGCAAAAAAAAACAGAAAAAAGGGACGTCTGGGTAGGCGAAAAGCCGAAGAAAAAAGGTAGTTCTTTTTCATCATCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39249</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>166427</contig_pos>
        <strand>+</strand>
        <context>CCGGTGGTTT[A/T]CCAAAAACGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TACCGCCAAGAAGCTGGCTCACAGGCGCCCGCCACGACGCCCGGTGGTTT</left_flank>
        <right_flank>CCAAAAACGAGATGTGTATATGTATTCGATGGAAACACGCGGAAAGTTGC</right_flank>
        <qual_score>130</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGTCATTTCATGATATCTGTCAGAATAATTTGCAAGACTAGTTCCATGCTTCAATATTAGAATTTTTCATGCTTTGTACAAAATTTTGGTCCCAATAAATGAGTTTTATTCCAGAGCAGATACTTCAAAACAAACGGGTGATGAAATTGAACAATACCAACAATATATATGATTCCAACTCAAAAAACAAAAAAATGACAAGTGGTCTGAAGGTATCAGAGAGGCTGTGGGCGAGTGACAACTCACAAGCGCTATCCGGCCACTGCACCGCGCGGAGGCTTTTGCCTGCTGCCTTTCGGCCCTGAGCCGTGCACCTCTCCTTATGCGCCCGGGACCGCCCGACTTCCGTCAGACGGACCCTAGCGACGTAGCGCTTGGCACGGACGCTCGGTCGCCGTTGCCAGCAACACCCACAGGACTCCTCCCTTCACTCCATCCACACTTGTCTACCGCCAAGAAGCTGGCTCACAGGCGCCCGCCACGACGCCCGGTGGTTTACCAAAAACGAGATGTGTATATGTATTCGATGGAAACACGCGGAAAGTTGCGGTTGCCTCCTTCCTCTTCTACTTTTTCTCTCTTCCTCTTTCTCCGCGTTTCCCAGTTTGGTCGTCCATAGAGCGCGTTTGCGCCGTTTTCGAGTAGGAAAGACAGCAATTGGGTTCATTTGAACAGAAAATCATTTAGACCTCCTTAAAGATACACAATAAAAGATGGGTTATGGTGAGAACAAGTCTATAATCTTATTGGCAAACTGAGAACGCAGAAAGTGTGTAATTTTTCGGCGAAAATTTTGTGTAATCCCCGAAAACCACAAGTTCGCTTAGGCCGTAGTAGATGACCAACGAACCTTGCGAGCAGAGAGTGCGGAAGGTTCAGAGAAACAGGTTCCTCCATAGGTCCGAACTCTCTAACTTCTATCATCAACTCATCAAATCATCATCATCTCTGCCACACACGCACACAAACACAGCTACGAGCACATATTTCAATCTTGT</canonical>
            <polymorphic>TCTGTCATTTCATGATATCTGTCAGAATAATTTGCAAGACTAGTTCCATGCTTCAATATTAGAATTTTTCATGCTTTGTACAAAATTTTGGTCCCAATAAATGAGTTTTATTCCAGAGCAGATACTTCAAAACAAACGGGTGATGAAATTGAACAATACCAACAATATATATGATTCCAACTCAAAAAACAAAAAAATGACAAGTGGTCTGAAGGTATCAGAGAGGCTGTGGGCGAGTGACAACTCACAAGCGCTATCCGGCCACTGCACCGCGCGGAGGCTTTTGCCTGCTGCCTTTCGGCCCTGAGCCGTGCACCTCTCCTTATGCGCCCGGGACCGCCCGACTTCCGTCAGACGGACCCTAGCGACGTAGCGCTTGGCACGGACGCTCGGTCGCCGTTGCCAGCAACACCCACAGGACTCCTCCCTTCACTCCATCCACACTTGTCTACCGCCAAGAAGCTGGCTCACAGGCGCCCGCCACGACGCCCGGTGGTTTWCCAAAAACGAGATGTGTATATGTATTCGATGGAAACACGCGGAAAGTTGCGGTTGCCTCCTTCCTCTTCTACTTTTTCTCTCTTCCTCTTTCTCCGCGTTTCCCAGTTTGGTCGTCCATAGAGCGCGTTTGCGCCGTTTTCGAGTAGGAAAGACAGCAATTGGGTTCATTTGAACAGAAAATCATTTAGACCTCCTTAAAGATACACAATAAAAGATGGGTTATGGTGAGAACAAGTCTATAATCTTATTGGCAAACTGAGAACGCAGAAAGTGTGTAATTTTTCGGCGAAAATTTTGTGTAATCCCCGAAAACCACAAGTTCGCTTAGGCCGTAGTAGATGACCAACGAACCTTGCGAGCAGAGAGTGCGGAAGGTTCAGAGAAACAGGTTCCTCCATAGGTCCGAACTCTCTAACTTCTATCATCAACTCATCAAATCATCATCATCTCTGCCACACACGCACACAAACACAGCTACGAGCACATATTTCAATCTTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 313 136 49</canonical_bands>
                <polymorphic_bands>551 313 136</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCATCCACACTTGTCTACC</pcr_primer_p1>
		<pcr_primer_p2>GGTCTAAATGATTTTCTGTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>TCCATCCACACTTGTCTACCGCCAAGAAGCTGGCTCACAGGCGCCCGCCACGACGCCCGGTGGTTTACCAAAAACGAGATGTGTATATGTATTCGATGGAAACACGCGGAAAGTTGCGGTTGCCTCCTTCCTCTTCTACTTTTTCTCTCTTCCTCTTTCTCCGCGTTTCCCAGTTTGGTCGTCCATAGAGCGCGTTTGCGCCGTTTTCGAGTAGGAAAGACAGCAATTGGGTTCATTTGAACAGAAAATCATTTAGACC</canonical_amplicon>
		<polymorphic_amplicon>TCCATCCACACTTGTCTACCGCCAAGAAGCTGGCTCACAGGCGCCCGCCACGACGCCCGGTGGTTTWCCAAAAACGAGATGTGTATATGTATTCGATGGAAACACGCGGAAAGTTGCGGTTGCCTCCTTCCTCTTCTACTTTTTCTCTCTTCCTCTTTCTCCGCGTTTCCCAGTTTGGTCGTCCATAGAGCGCGTTTGCGCCGTTTTCGAGTAGGAAAGACAGCAATTGGGTTCATTTGAACAGAAAATCATTTAGACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39250</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>167454</contig_pos>
        <strand>+</strand>
        <context>AGTTTTCAAT[A/G]TATAACCGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAGATTTTTGTTGTTGTTTGATATCTATGCACCATTTGGAGTTTTCAAT</left_flank>
        <right_flank>TATAACCGTGGTTTCAAAGAAGAATCTCATCTTAGTAAACAGTTGACTTT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCTTCAGATCTTCAATATTTTATTGATTAGAAACATCCGACATTTCACATCCTGCATGAATCTATTCCAACTGGAACGACCTAATTCATCTCTATTTTCCAGATTGCTTCGATTTTTCATTCTTGACACCTCTCGCTGTTTTTTGAGCTACCTTCTCGGCGATTGATGAGCACACCTGGCAGTTTTCAAAAATATTTAGGAAAAGTGTGTGTCTGTTAAAAATATATATTATCATGTTCTTCTTCATTTTCTCTTCTCTTTTTCTCTTCTTGTCCGCCCCCTATCCGTTCGCAAATAAAGACGAAAATGATGTTTTGCTTTTTTCCCTCATTTTTCTTCCCGGAGAACAATTCCACGCATCACCGTGTTTCATTGCTCACCTAATTTTTGTCAGATCATTCATTTTCTGGGTGGCTTTTAATTTGAACCACTTTTGATGACATTTTTGCTAGATTTTTGTTGTTGTTTGATATCTATGCACCATTTGGAGTTTTCAATGTATAACCGTGGTTTCAAAGAAGAATCTCATCTTAGTAAACAGTTGACTTTGAAATTTTCTAAAAGTAAATCAATATTTAAAAAGCCGGCCGAAAAAATGAAAATTTGGTGGATGCACCAAACCATTTTTCGTATAGTTACGATTTATTGTAATCTGCGATGCATTAATTATTAATTTGTGTTAATTTATTCAGCTAGCATTGATAATCATCTCCAATAGATTTCATTTAGATTCCTAGTTTTTTTTTGGGTTTCAATATCGTCTAACAATTAAATGGTATTTTTTCAGCCGATGGTTTAATACTATCCGTCTGATTTTATCATATTTCCTCAATAGAAGCCCACCAAAACCGTCAACTTCAAGCTCAATTATCTAATTTCTTGTGAAATATATTATAAGTTTGTCAACAGATAAAACACTTCTGTAATTATGATAAACAATTTATCATTTGACAATTTTTTCATATCTTTGACGAGAACCGAGATGAATTGGCTCAGAGT</canonical>
            <polymorphic>TCCTTCAGATCTTCAATATTTTATTGATTAGAAACATCCGACATTTCACATCCTGCATGAATCTATTCCAACTGGAACGACCTAATTCATCTCTATTTTCCAGATTGCTTCGATTTTTCATTCTTGACACCTCTCGCTGTTTTTTGAGCTACCTTCTCGGCGATTGATGAGCACACCTGGCAGTTTTCAAAAATATTTAGGAAAAGTGTGTGTCTGTTAAAAATATATATTATCATGTTCTTCTTCATTTTCTCTTCTCTTTTTCTCTTCTTGTCCGCCCCCTATCCGTTCGCAAATAAAGACGAAAATGATGTTTTGCTTTTTTCCCTCATTTTTCTTCCCGGAGAACAATTCCACGCATCACCGTGTTTCATTGCTCACCTAATTTTTGTCAGATCATTCATTTTCTGGGTGGCTTTTAATTTGAACCACTTTTGATGACATTTTTGCTAGATTTTTGTTGTTGTTTGATATCTATGCACCATTTGGAGTTTTCAATRTATAACCGTGGTTTCAAAGAAGAATCTCATCTTAGTAAACAGTTGACTTTGAAATTTTCTAAAAGTAAATCAATATTTAAAAAGCCGGCCGAAAAAATGAAAATTTGGTGGATGCACCAAACCATTTTTCGTATAGTTACGATTTATTGTAATCTGCGATGCATTAATTATTAATTTGTGTTAATTTATTCAGCTAGCATTGATAATCATCTCCAATAGATTTCATTTAGATTCCTAGTTTTTTTTTGGGTTTCAATATCGTCTAACAATTAAATGGTATTTTTTCAGCCGATGGTTTAATACTATCCGTCTGATTTTATCATATTTCCTCAATAGAAGCCCACCAAAACCGTCAACTTCAAGCTCAATTATCTAATTTCTTGTGAAATATATTATAAGTTTGTCAACAGATAAAACACTTCTGTAATTATGATAAACAATTTATCATTTGACAATTTTTTCATATCTTTGACGAGAACCGAGATGAATTGGCTCAGAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATTTGAACCACTTTTGATGAC</pcr_primer_p1>
		<pcr_primer_p2>ATAATTAATGCATCGCAGATTAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TAATTTGAACCACTTTTGATGACATTTTTGCTAGATTTTTGTTGTTGTTTGATATCTATGCACCATTTGGAGTTTTCAATGTATAACCGTGGTTTCAAAGAAGAATCTCATCTTAGTAAACAGTTGACTTTGAAATTTTCTAAAAGTAAATCAATATTTAAAAAGCCGGCCGAAAAAATGAAAATTTGGTGGATGCACCAAACCATTTTTCGTATAGTTACGATTTATTGTAATCTGCGATGCATTAATTAT</canonical_amplicon>
		<polymorphic_amplicon>TAATTTGAACCACTTTTGATGACATTTTTGCTAGATTTTTGTTGTTGTTTGATATCTATGCACCATTTGGAGTTTTCAATRTATAACCGTGGTTTCAAAGAAGAATCTCATCTTAGTAAACAGTTGACTTTGAAATTTTCTAAAAGTAAATCAATATTTAAAAAGCCGGCCGAAAAAATGAAAATTTGGTGGATGCACCAAACCATTTTTCGTATAGTTACGATTTATTGTAATCTGCGATGCATTAATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39251</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>167589</contig_pos>
        <strand>+</strand>
        <context>TTTTTCGTAT[A/C]GTTACGATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCGGCCGAAAAAATGAAAATTTGGTGGATGCACCAAACCATTTTTCGTAT</left_flank>
        <right_flank>GTTACGATTTATTGTAATCTGCGATGCATTAATTATTAATTTGTGTTAAT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTGTTTTTTGAGCTACCTTCTCGGCGATTGATGAGCACACCTGGCAGTTTTCAAAAATATTTAGGAAAAGTGTGTGTCTGTTAAAAATATATATTATCATGTTCTTCTTCATTTTCTCTTCTCTTTTTCTCTTCTTGTCCGCCCCCTATCCGTTCGCAAATAAAGACGAAAATGATGTTTTGCTTTTTTCCCTCATTTTTCTTCCCGGAGAACAATTCCACGCATCACCGTGTTTCATTGCTCACCTAATTTTTGTCAGATCATTCATTTTCTGGGTGGCTTTTAATTTGAACCACTTTTGATGACATTTTTGCTAGATTTTTGTTGTTGTTTGATATCTATGCACCATTTGGAGTTTTCAATGTATAACCGTGGTTTCAAAGAAGAATCTCATCTTAGTAAACAGTTGACTTTGAAATTTTCTAAAAGTAAATCAATATTTAAAAAGCCGGCCGAAAAAATGAAAATTTGGTGGATGCACCAAACCATTTTTCGTATAGTTACGATTTATTGTAATCTGCGATGCATTAATTATTAATTTGTGTTAATTTATTCAGCTAGCATTGATAATCATCTCCAATAGATTTCATTTAGATTCCTAGTTTTTTTTTGGGTTTCAATATCGTCTAACAATTAAATGGTATTTTTTCAGCCGATGGTTTAATACTATCCGTCTGATTTTATCATATTTCCTCAATAGAAGCCCACCAAAACCGTCAACTTCAAGCTCAATTATCTAATTTCTTGTGAAATATATTATAAGTTTGTCAACAGATAAAACACTTCTGTAATTATGATAAACAATTTATCATTTGACAATTTTTTCATATCTTTGACGAGAACCGAGATGAATTGGCTCAGAGTTAAAGGCTACGAGCCCTTCTATTACAGTTTTTACGGTATTTAAATACTCTATTTTATTAAAAATATGACATTTTATCAATTGGGTTTCTCGAAACTTCTCCAAATACTCAATCTGCCTGTCACATGTCCTCTTTG</canonical>
            <polymorphic>GCTGTTTTTTGAGCTACCTTCTCGGCGATTGATGAGCACACCTGGCAGTTTTCAAAAATATTTAGGAAAAGTGTGTGTCTGTTAAAAATATATATTATCATGTTCTTCTTCATTTTCTCTTCTCTTTTTCTCTTCTTGTCCGCCCCCTATCCGTTCGCAAATAAAGACGAAAATGATGTTTTGCTTTTTTCCCTCATTTTTCTTCCCGGAGAACAATTCCACGCATCACCGTGTTTCATTGCTCACCTAATTTTTGTCAGATCATTCATTTTCTGGGTGGCTTTTAATTTGAACCACTTTTGATGACATTTTTGCTAGATTTTTGTTGTTGTTTGATATCTATGCACCATTTGGAGTTTTCAATGTATAACCGTGGTTTCAAAGAAGAATCTCATCTTAGTAAACAGTTGACTTTGAAATTTTCTAAAAGTAAATCAATATTTAAAAAGCCGGCCGAAAAAATGAAAATTTGGTGGATGCACCAAACCATTTTTCGTATMGTTACGATTTATTGTAATCTGCGATGCATTAATTATTAATTTGTGTTAATTTATTCAGCTAGCATTGATAATCATCTCCAATAGATTTCATTTAGATTCCTAGTTTTTTTTTGGGTTTCAATATCGTCTAACAATTAAATGGTATTTTTTCAGCCGATGGTTTAATACTATCCGTCTGATTTTATCATATTTCCTCAATAGAAGCCCACCAAAACCGTCAACTTCAAGCTCAATTATCTAATTTCTTGTGAAATATATTATAAGTTTGTCAACAGATAAAACACTTCTGTAATTATGATAAACAATTTATCATTTGACAATTTTTTCATATCTTTGACGAGAACCGAGATGAATTGGCTCAGAGTTAAAGGCTACGAGCCCTTCTATTACAGTTTTTACGGTATTTAAATACTCTATTTTATTAAAAATATGACATTTTATCAATTGGGTTTCTCGAAACTTCTCCAAATACTCAATCTGCCTGTCACATGTCCTCTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGTTTGATATCTATGCACCAT</pcr_primer_p1>
		<pcr_primer_p2>GATGATTATCAATGCTAGCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTTGTTTGATATCTATGCACCATTTGGAGTTTTCAATGTATAACCGTGGTTTCAAAGAAGAATCTCATCTTAGTAAACAGTTGACTTTGAAATTTTCTAAAAGTAAATCAATATTTAAAAAGCCGGCCGAAAAAATGAAAATTTGGTGGATGCACCAAACCATTTTTCGTATAGTTACGATTTATTGTAATCTGCGATGCATTAATTATTAATTTGTGTTAATTTATTCAGCTAGCATTGATAATCATC</canonical_amplicon>
		<polymorphic_amplicon>GTTGTTTGATATCTATGCACCATTTGGAGTTTTCAATGTATAACCGTGGTTTCAAAGAAGAATCTCATCTTAGTAAACAGTTGACTTTGAAATTTTCTAAAAGTAAATCAATATTTAAAAAGCCGGCCGAAAAAATGAAAATTTGGTGGATGCACCAAACCATTTTTCGTATMGTTACGATTTATTGTAATCTGCGATGCATTAATTATTAATTTGTGTTAATTTATTCAGCTAGCATTGATAATCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39252</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>167811</contig_pos>
        <strand></strand>
        <context>aaaccgtcaa[C/A]ttcaagctca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CCGTCTGATTTTATCATATTTCCTCAATAGAAGCCCACCAAAACCGTCAA</left_flank>
        <right_flank>TTCAAGCTCAATTATCTAATTTCTTGTGAAATATATTATAAGTTTGTCAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCATCACCGTGTTTCATTGCTCACCTAATTTTTGTCAGATCATTCATTTTCTGGGTGGCTTTTAATTTGAACCACTTTTGATGACATTTTTGCTAGATTTTTGTTGTTGTTTGATATCTATGCACCATTTGGAGTTTTCAATGTATAACCGTGGTTTCAAAGAAGAATCTCATCTTAGTAAACAGTTGACTTTGAAATTTTCTAAAAGTAAATCAATATTTAAAAAGCCGGCCGAAAAAATGAAAATTTGGTGGATGCACCAAACCATTTTTCGTATAGTTACGATTTATTGTAATCTGCGATGCATTAATTATTAATTTGTGTTAATTTATTCAGCTAGCATTGATAATCATCTCCAATAGATTTCATTTAGATTCCTAGTTTTTTTTTGGGTTTCAATATCGTCTAACAATTAAATGGTATTTTTTCAGCCGATGGTTTAATACTATCCGTCTGATTTTATCATATTTCCTCAATAGAAGCCCACCAAAACCGTCAACTTCAAGCTCAATTATCTAATTTCTTGTGAAATATATTATAAGTTTGTCAACAGATAAAACACTTCTGTAATTATGATAAACAATTTATCATTTGACAATTTTTTCATATCTTTGACGAGAACCGAGATGAATTGGCTCAGAGTTAAAGGCTACGAGCCCTTCTATTACAGTTTTTACGGTATTTAAATACTCTATTTTATTAAAAATATGACATTTTATCAATTGGGTTTCTCGAAACTTCTCCAAATACTCAATCTGCCTGTCACATGTCCTCTTTGCGTGATTCATCAAAAACTCTTCCTTCTTTTTTCTGTCGCACCGAACATTCTCGTTCATCACCAGCGTGTTCAAAATGTCTTTTTTCGTTTCCCTCGTCCGTTTCAAAATCCTTCCCCAATCATTCTTCCTTCCTTCCCATCTGATTCTCCAATTCTCGAGTGCTCTCTTTTCCATCGTTTTGTTCTCGCGCAGTAGCGTCGCCCCGCAATCACAACGACTTA</canonical>
            <polymorphic>GCATCACCGTGTTTCATTGCTCACCTAATTTTTGTCAGATCATTCATTTTCTGGGTGGCTTTTAATTTGAACCACTTTTGATGACATTTTTGCTAGATTTTTGTTGTTGTTTGATATCTATGCACCATTTGGAGTTTTCAATGTATAACCGTGGTTTCAAAGAAGAATCTCATCTTAGTAAACAGTTGACTTTGAAATTTTCTAAAAGTAAATCAATATTTAAAAAGCCGGCCGAAAAAATGAAAATTTGGTGGATGCACCAAACCATTTTTCGTATAGTTACGATTTATTGTAATCTGCGATGCATTAATTATTAATTTGTGTTAATTTATTCAGCTAGCATTGATAATCATCTCCAATAGATTTCATTTAGATTCCTAGTTTTTTTTTGGGTTTCAATATCGTCTAACAATTAAATGGTATTTTTTCAGCCGATGGTTTAATACTATCCGTCTGATTTTATCATATTTCCTCAATAGAAGCCCACCAAAACCGTCAAMTTCAAGCTCAATTATCTAATTTCTTGTGAAATATATTATAAGTTTGTCAACAGATAAAACACTTCTGTAATTATGATAAACAATTTATCATTTGACAATTTTTTCATATCTTTGACGAGAACCGAGATGAATTGGCTCAGAGTTAAAGGCTACGAGCCCTTCTATTACAGTTTTTACGGTATTTAAATACTCTATTTTATTAAAAATATGACATTTTATCAATTGGGTTTCTCGAAACTTCTCCAAATACTCAATCTGCCTGTCACATGTCCTCTTTGCGTGATTCATCAAAAACTCTTCCTTCTTTTTTCTGTCGCACCGAACATTCTCGTTCATCACCAGCGTGTTCAAAATGTCTTTTTTCGTTTCCCTCGTCCGTTTCAAAATCCTTCCCCAATCATTCTTCCTTCCTTCCCATCTGATTCTCCAATTCTCGAGTGCTCTCTTTTCCATCGTTTTGTTCTCGCGCAGTAGCGTCGCCCCGCAATCACAACGACTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>452 310 187 51</canonical_bands>
                <polymorphic_bands>452 361 187</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>452 310 180 51 7</canonical_bands>
                <polymorphic_bands>452 361 180 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTTAATACTATCCGTCTGATTT</pcr_primer_p1>
		<pcr_primer_p2>AACCCAATTGATAAAATGTCATA</pcr_primer_p2>
		<pcr_amplicon_size>293</pcr_amplicon_size>
		<canonical_amplicon>GGTTTAATACTATCCGTCTGATTTTATCATATTTCCTCAATAGAAGCCCACCAAAACCGTCAACTTCAAGCTCAATTATCTAATTTCTTGTGAAATATATTATAAGTTTGTCAACAGATAAAACACTTCTGTAATTATGATAAACAATTTATCATTTGACAATTTTTTCATATCTTTGACGAGAACCGAGATGAATTGGCTCAGAGTTAAAGGCTACGAGCCCTTCTATTACAGTTTTTACGGTATTTAAATACTCTATTTTATTAAAAATATGACATTTTATCAATTGGGTT</canonical_amplicon>
		<polymorphic_amplicon>GGTTTAATACTATCCGTCTGATTTTATCATATTTCCTCAATAGAAGCCCACCAAAACCGTCAAMTTCAAGCTCAATTATCTAATTTCTTGTGAAATATATTATAAGTTTGTCAACAGATAAAACACTTCTGTAATTATGATAAACAATTTATCATTTGACAATTTTTTCATATCTTTGACGAGAACCGAGATGAATTGGCTCAGAGTTAAAGGCTACGAGCCCTTCTATTACAGTTTTTACGGTATTTAAATACTCTATTTTATTAAAAATATGACATTTTATCAATTGGGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39253</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>195120</contig_pos>
        <strand>+</strand>
        <context>TAATTATTTC[C/T]CAAATTAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATATGTCGAATCAACCATCTACCTCTTCAATGTCCGCATCTAATTATTTC</left_flank>
        <right_flank>CAAATTAAAATGGGAATTCATGTCGAACTACATTGCTGTTTATGGTCCAT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTGTCGTTCGGATTTCGAGGTACCAGCTTGGGAACAGAAGGTTCCGGACAACTATCAACGTATGCTGGCAACCGTATTCTCGAAAGAGGCCTTGTGGGGACCACGAGAGGATCGCAAGAATTTCGGATTCATGCAGGGAATTTCAGGAATATTCCCAAATATGAGGGTCAAGTGAGTGTTTGGCATCATTTTTATGATAATGTTGTTTTTCCCGAAGAGGTGCAGCTAATCTTACCATTTCGAAACCTACACAACCGTCAGAACGCCGTCTTTTGAGTTTTGTTGATTCGCCTGATGTCACTTCGAACTTTGAGAGTCCGTTTGGAAGCGTTCAACAACCTACCACTGAAGATATGCATCGTCAGCAGCAGATGTACGCTTTGTTAGTGCAAAAGATGCAAATGCAAAGTCTTCAAAACCAACAACAACAGCTCCATCAACATCTCAATATGTCGAATCAACCATCTACCTCTTCAATGTCCGCATCTAATTATTTCCCAAATTAAAATGGGAATTCATGTCGAACTACATTGCTGTTTATGGTCCATACCCGTCTTGTGTTCATATATTGCATTTCCATTTCGTTTTTTAGATAAAAAATCACCATGTGATTATTTGCGAATTGTCAATTGCTCCCTTATCCAAATTTATATTATGTTCCAATTGAAAACATTCAAAATTACCATGTTCCTCCTTCCCCCTCTAGAATCTATTAGGTTTCTACCCCAATCTTGCGTATTAGAACATCATTATTTTCTCACAGACACCGGTCTCCTAATTTTCGATATGTGTACTTCGAATTGTTTCATTCGCTCCGCCCATTGTCCCAAATGCACCCGTTTTTTATATCACACTGATGCTTCTCGATTCATATTCTCGGGATTCTCCGCTCTATCATTTTACTATTGATTCGGAGAGTATTCAGGTGTTTCCCAATTTATGAATATGTTCGACGAAATTCTTGATTTTATTATATGAGAGATGTGAGAAGAATAACA</canonical>
            <polymorphic>CTTTGTCGTTCGGATTTCGAGGTACCAGCTTGGGAACAGAAGGTTCCGGACAACTATCAACGTATGCTGGCAACCGTATTCTCGAAAGAGGCCTTGTGGGGACCACGAGAGGATCGCAAGAATTTCGGATTCATGCAGGGAATTTCAGGAATATTCCCAAATATGAGGGTCAAGTGAGTGTTTGGCATCATTTTTATGATAATGTTGTTTTTCCCGAAGAGGTGCAGCTAATCTTACCATTTCGAAACCTACACAACCGTCAGAACGCCGTCTTTTGAGTTTTGTTGATTCGCCTGATGTCACTTCGAACTTTGAGAGTCCGTTTGGAAGCGTTCAACAACCTACCACTGAAGATATGCATCGTCAGCAGCAGATGTACGCTTTGTTAGTGCAAAAGATGCAAATGCAAAGTCTTCAAAACCAACAACAACAGCTCCATCAACATCTCAATATGTCGAATCAACCATCTACCTCTTCAATGTCCGCATCTAATTATTTCYCAAATTAAAATGGGAATTCATGTCGAACTACATTGCTGTTTATGGTCCATACCCGTCTTGTGTTCATATATTGCATTTCCATTTCGTTTTTTAGATAAAAAATCACCATGTGATTATTTGCGAATTGTCAATTGCTCCCTTATCCAAATTTATATTATGTTCCAATTGAAAACATTCAAAATTACCATGTTCCTCCTTCCCCCTCTAGAATCTATTAGGTTTCTACCCCAATCTTGCGTATTAGAACATCATTATTTTCTCACAGACACCGGTCTCCTAATTTTCGATATGTGTACTTCGAATTGTTTCATTCGCTCCGCCCATTGTCCCAAATGCACCCGTTTTTTATATCACACTGATGCTTCTCGATTCATATTCTCGGGATTCTCCGCTCTATCATTTTACTATTGATTCGGAGAGTATTCAGGTGTTTCCCAATTTATGAATATGTTCGACGAAATTCTTGATTTTATTATATGAGAGATGTGAGAAGAATAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACAACCTACCACTGAAGATATG</pcr_primer_p1>
		<pcr_primer_p2>AAATGGAAATGCAATATATGAAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACAACCTACCACTGAAGATATGCATCGTCAGCAGCAGATGTACGCTTTGTTAGTGCAAAAGATGCAAATGCAAAGTCTTCAAAACCAACAACAACAGCTCCATCAACATCTCAATATGTCGAATCAACCATCTACCTCTTCAATGTCCGCATCTAATTATTTCCCAAATTAAAATGGGAATTCATGTCGAACTACATTGCTGTTTATGGTCCATACCCGTCTTGTGTTCATATATTGCATTTCCATTT</canonical_amplicon>
		<polymorphic_amplicon>AACAACCTACCACTGAAGATATGCATCGTCAGCAGCAGATGTACGCTTTGTTAGTGCAAAAGATGCAAATGCAAAGTCTTCAAAACCAACAACAACAGCTCCATCAACATCTCAATATGTCGAATCAACCATCTACCTCTTCAATGTCCGCATCTAATTATTTCYCAAATTAAAATGGGAATTCATGTCGAACTACATTGCTGTTTATGGTCCATACCCGTCTTGTGTTCATATATTGCATTTCCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39254</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>203365</contig_pos>
        <strand>+</strand>
        <context>TCCAAGTGAC[A/G]TATGACATCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCGAGAGCGTTTGGAAGAGAATTGAAATATACAGGAATGGTCCAAGTGAC</left_flank>
        <right_flank>TATGACATCATTCGAAGAGAAGGAGCAATGGCATTATGGACAGGAGTAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGGAAATGATGAAACTTTCGGTTTCTGTGAACTGATTCTAAAATTTTTTCATCTAAATTAATCATAACAATATCTCTCAGTCAATCGATTTTTTACTAGCCTGTACAATAATGACTCTTGATAGCAATTCGATATAAACTTCAATCAAAGTTGCCTTGTCGTGTTTTAATTTTCTGCAAAAACTAGTTTATTTTGTTCCAGATGCCGTCCGCAGTCACGAGCACTTCAAACTCATCCGATGTCGGTCATAGTCAAACATTTAAACGAATAGCAACAAAAGTAAGACTCAAAAAAGTATTTATTAACAAAAATGAATTTGTTTACAGTATTTTTTATCATGTACAGCTGCGTTAGTAGCCGAAACAGTCACATATCCTTTGGATATAACAAAAACACGACTGCAAATAGCCAAAAATAAGTTCACCAGAGGAGGTTAGTCCTCGAGAAATCGAGAGCGTTTGGAAGAGAATTGAAATATACAGGAATGGTCCAAGTGACATATGACATCATTCGAAGAGAAGGAGCAATGGCATTATGGACAGGAGTAGCGCCAGCTATCACGAGACATTACATTTATACAGGAATCCGAATGGGTGCATATGAGCAAATTCGTCTATTAACCTTTGATAAGGATGTAGGTTCAAATAAATGTTTTTAATCTGGAGATGTTTTTTGTAGAAAGAAAAGACGTTCCCACTTTGGAAATCTATGTTGTGCGGAGCTTTTTCCGGACTCATCGCCCAGTTTGCTGCTAGCCCGACGGATTTGGTGAAAGTTCAAATGCAGATGGAAGGGTTGAGAAGATTACAAAATCAGCCGTTGCGTTACACTGGAGCAATCGACTGTTTTCGATCCTTATACAGAACTCAAGGATTCTTTGGTTTGTGGATCGGATGGATGCCTAATTGTCAGAGAGCTGCTCTGTTGAATATGGCTGATATTGCAACTTATGATAGAGTGAAACATGGGCTTATTGATCATTTTCAATTCAAGGTGAGT</canonical>
            <polymorphic>CCGGAAATGATGAAACTTTCGGTTTCTGTGAACTGATTCTAAAATTTTTTCATCTAAATTAATCATAACAATATCTCTCAGTCAATCGATTTTTTACTAGCCTGTACAATAATGACTCTTGATAGCAATTCGATATAAACTTCAATCAAAGTTGCCTTGTCGTGTTTTAATTTTCTGCAAAAACTAGTTTATTTTGTTCCAGATGCCGTCCGCAGTCACGAGCACTTCAAACTCATCCGATGTCGGTCATAGTCAAACATTTAAACGAATAGCAACAAAAGTAAGACTCAAAAAAGTATTTATTAACAAAAATGAATTTGTTTACAGTATTTTTTATCATGTACAGCTGCGTTAGTAGCCGAAACAGTCACATATCCTTTGGATATAACAAAAACACGACTGCAAATAGCCAAAAATAAGTTCACCAGAGGAGGTTAGTCCTCGAGAAATCGAGAGCGTTTGGAAGAGAATTGAAATATACAGGAATGGTCCAAGTGACRTATGACATCATTCGAAGAGAAGGAGCAATGGCATTATGGACAGGAGTAGCGCCAGCTATCACGAGACATTACATTTATACAGGAATCCGAATGGGTGCATATGAGCAAATTCGTCTATTAACCTTTGATAAGGATGTAGGTTCAAATAAATGTTTTTAATCTGGAGATGTTTTTTGTAGAAAGAAAAGACGTTCCCACTTTGGAAATCTATGTTGTGCGGAGCTTTTTCCGGACTCATCGCCCAGTTTGCTGCTAGCCCGACGGATTTGGTGAAAGTTCAAATGCAGATGGAAGGGTTGAGAAGATTACAAAATCAGCCGTTGCGTTACACTGGAGCAATCGACTGTTTTCGATCCTTATACAGAACTCAAGGATTCTTTGGTTTGTGGATCGGATGGATGCCTAATTGTCAGAGAGCTGCTCTGTTGAATATGGCTGATATTGCAACTTATGATAGAGTGAAACATGGGCTTATTGATCATTTTCAATTCAAGGTGAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATATG</site>
                <isoschizomers>
                    <enzyme>FauNDI</enzyme>
                    <enzyme>NdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 401 99</canonical_bands>
                <polymorphic_bands>599 401</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATAGCCAAAAATAAGTTCAC</pcr_primer_p1>
		<pcr_primer_p2>TTGAACCTACATCCTTATCAAAG</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>CAAATAGCCAAAAATAAGTTCACCAGAGGAGGTTAGTCCTCGAGAAATCGAGAGCGTTTGGAAGAGAATTGAAATATACAGGAATGGTCCAAGTGACATATGACATCATTCGAAGAGAAGGAGCAATGGCATTATGGACAGGAGTAGCGCCAGCTATCACGAGACATTACATTTATACAGGAATCCGAATGGGTGCATATGAGCAAATTCGTCTATTAACCTTTGATAAGGATGTAGGTTCAA</canonical_amplicon>
		<polymorphic_amplicon>CAAATAGCCAAAAATAAGTTCACCAGAGGAGGTTAGTCCTCGAGAAATCGAGAGCGTTTGGAAGAGAATTGAAATATACAGGAATGGTCCAAGTGACRTATGACATCATTCGAAGAGAAGGAGCAATGGCATTATGGACAGGAGTAGCGCCAGCTATCACGAGACATTACATTTATACAGGAATCCGAATGGGTGCATATGAGCAAATTCGTCTATTAACCTTTGATAAGGATGTAGGTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39255</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>207799</contig_pos>
        <strand>+</strand>
        <context>TTAAGAGAGA[A/T]ATTCAATTAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGCATCGTTTCCTCTTGGCTTTGGAAATGCACATAGGTATTTAAGAGAGA</left_flank>
        <right_flank>ATTCAATTACAGTAATTCATTCAATTCAGCTATATCACCACACGATGCGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCAGCATGGACTAGTTGGAATAGTCAATATTGAGGTCAGCATTAGATGATGTTACTATACTATTTCATTCTATACTTCAGACCGCCAATGGAAAGAACGAAACCGCTTGGCAACGTTTCACCACACTCGGTCCTGTTGCCCTTCTCCCTCTCTCCGATACGATTTCTGGTCTGACGTGGTCCACAAGTCCCGAAGAAGCACAACGATTAAAGCAACTTCCAGCTGATCAGTTTGTAGATGAACTTAATTCTGCATTGGTTAGTTTTGAATTTCCTAAATCTGACCGAAAAAGAAACTATTTCAGTTCTCACAAGACGACCAGCTGCCATACGTGAATCAGGCAATCTTCGCTTTGAACAAAATGAATCCATTCCGAACAGAAACATTTGGACGCAAAGCAGAAGGAACTACACCTCCACACATCATTTCAGTTCAAGACAAAAGTCGAGCATCGTTTCCTCTTGGCTTTGGAAATGCACATAGGTATTTAAGAGAGAAATTCAATTACAGTAATTCATTCAATTCAGCTATATCACCACACGATGCGCGTTGATTGGGGATGCTGCTCATAGAATGCATCCACTTGCAGGTTAGCACAATCTCTGGTTCTCATTACGGTGATATTTTGTAGGACAAGGTGTGAATCTTGGTTGGAGCGATGTACAAATTCTGGACAAAATACTTGGAGATGCAGTACGAGAAGGAGCAGATATCGGAAGCATCACATATCTTCGAGAATACGATTCAGCTGCACAGAAGCATAATCTGCCCGTTATGGTTTCTGTCGATCTGCTAAATCGAATCTACCGTACCGATGCGCCCGCGATTGTTGCTGCTCGAGCGTTTGGCCTGAACGCATTTAATTCTCTGGGACCTGTCAAAAACTTTCTCATGAATTATTTATCAGCACATCGGTGAACAATTTCCGGTTTATTGTTGGTCAGTATAAATTAGTTTTCTGTTTATGTTGATAGTTTTTGAATAAATGTAGTGTTTCT</canonical>
            <polymorphic>AATCAGCATGGACTAGTTGGAATAGTCAATATTGAGGTCAGCATTAGATGATGTTACTATACTATTTCATTCTATACTTCAGACCGCCAATGGAAAGAACGAAACCGCTTGGCAACGTTTCACCACACTCGGTCCTGTTGCCCTTCTCCCTCTCTCCGATACGATTTCTGGTCTGACGTGGTCCACAAGTCCCGAAGAAGCACAACGATTAAAGCAACTTCCAGCTGATCAGTTTGTAGATGAACTTAATTCTGCATTGGTTAGTTTTGAATTTCCTAAATCTGACCGAAAAAGAAACTATTTCAGTTCTCACAAGACGACCAGCTGCCATACGTGAATCAGGCAATCTTCGCTTTGAACAAAATGAATCCATTCCGAACAGAAACATTTGGACGCAAAGCAGAAGGAACTACACCTCCACACATCATTTCAGTTCAAGACAAAAGTCGAGCATCGTTTCCTCTTGGCTTTGGAAATGCACATAGGTATTTAAGAGAGAWATTCAATTACAGTAATTCATTCAATTCAGCTATATCACCACACGATGCGCGTTGATTGGGGATGCTGCTCATAGAATGCATCCACTTGCAGGTTAGCACAATCTCTGGTTCTCATTACGGTGATATTTTGTAGGACAAGGTGTGAATCTTGGTTGGAGCGATGTACAAATTCTGGACAAAATACTTGGAGATGCAGTACGAGAAGGAGCAGATATCGGAAGCATCACATATCTTCGAGAATACGATTCAGCTGCACAGAAGCATAATCTGCCCGTTATGGTTTCTGTCGATCTGCTAAATCGAATCTACCGTACCGATGCGCCCGCGATTGTTGCTGCTCGAGCGTTTGGCCTGAACGCATTTAATTCTCTGGGACCTGTCAAAAACTTTCTCATGAATTATTTATCAGCACATCGGTGAACAATTTCCGGTTTATTGTTGGTCAGTATAAATTAGTTTTCTGTTTATGTTGATAGTTTTTGAATAAATGTAGTGTTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>333 269 230 168</canonical_bands>
                <polymorphic_bands>398 333 269</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>247 230 196 145 50 33 28 26 22 9 9 5</canonical_bands>
                <polymorphic_bands>247 235 196 145 50 33 28 26 22 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGCAGAAGGAACTACACCTC</pcr_primer_p1>
		<pcr_primer_p2>CACACCTTGTCCTACAAAATATC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>AAGCAGAAGGAACTACACCTCCACACATCATTTCAGTTCAAGACAAAAGTCGAGCATCGTTTCCTCTTGGCTTTGGAAATGCACATAGGTATTTAAGAGAGAAATTCAATTACAGTAATTCATTCAATTCAGCTATATCACCACACGATGCGCGTTGATTGGGGATGCTGCTCATAGAATGCATCCACTTGCAGGTTAGCACAATCTCTGGTTCTCATTACGGTGATATTTTGTAGGACAAGGTGTG</canonical_amplicon>
		<polymorphic_amplicon>AAGCAGAAGGAACTACACCTCCACACATCATTTCAGTTCAAGACAAAAGTCGAGCATCGTTTCCTCTTGGCTTTGGAAATGCACATAGGTATTTAAGAGAGAWATTCAATTACAGTAATTCATTCAATTCAGCTATATCACCACACGATGCGCGTTGATTGGGGATGCTGCTCATAGAATGCATCCACTTGCAGGTTAGCACAATCTCTGGTTCTCATTACGGTGATATTTTGTAGGACAAGGTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39256</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>295820</contig_pos>
        <strand></strand>
        <context>TATTATGTAG[T/A]ATCTTTATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTCATGATGGTGAATAGTTTTAAATGTAGCAAAATTTTGTATTATGTAG</left_flank>
        <right_flank>ATCTTTATTCGATATTCAAATCTAAATAGAAATACAATGTTTTCATAGTA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGCTCAAGCAGTGTCCAGTATGTTTGCTCTCGCGCCCCGGAGCAAGTGCGCACTGCTCTTCCGACCACGAACCACACCTCCAAATTCGAGAAAAGAAAGAAAATAAAGTGTCTCCCGTGTTTTTTGTCCTAATCGATCTGGGGGAACTCCTCCCTTTCTCACAACACACAATGTTTTTGAGTCTGGGAGAAACGTCGGAGGCCGGCCGTTCGGTCATTTGACACCTTTGCATAGGCATCGCTTCGTATCATTCTTTCACTTTTTGTTACTCTTAAACTAAACTATTGAAAGCTGGCAGAGAAATACGATTCCCTTCTCTTTTGAATTATTCGTTTTGTTTTCTATGTCGACCCCTCAAATTCTACTGTTCATCAGCACCAGATTATCCAAAAATCTACTCGAGACTCACTTTCGCTGAAAAACTTGTTCACCTCTAGTTCTGAAGTGTTTTCATGATGGTGAATAGTTTTAAATGTAGCAAAATTTTGTATTATGTAGTATCTTTATTCGATATTCAAATCTAAATAGAAATACAATGTTTTCATAGTAGCCCACCGAAACCGTCAATTTGGAGCCTAATTATCCTTATTCCTGTGAAAAATATCAAAAATGTGTCAACTGATAAATTATTTATCATAATATCTCCAATATTTCATCTGTTGACAGATTTTTGAAATCTCTCGTGGGAACCGAGATAATTGAGCTCAAAATTGACGATTTGACCAAACTTTCGAAACTGATTTTAAAAACCAAAATCAGTTTGAATGAAAATTTCTGATAAATATCCAAGGATTGAATCTACTTTTTTTAAATTTTAAAATTTTCAATTTAGGTCTCCAGAAAAAGGAATGAACTTTGATAAAGAGTTGAAAGATAATTAAATAGTTCTAAAAATAATTTTTAAAAACAAAAAAAACTGTCATAATGTACCTCTAATATCAGAAGCCCGACCAAACCGTCAACTTTGAGATCAATTATTTTGATTCATGTGGGAGATAT</canonical>
            <polymorphic>CTGCTCAAGCAGTGTCCAGTATGTTTGCTCTCGCGCCCCGGAGCAAGTGCGCACTGCTCTTCCGACCACGAACCACACCTCCAAATTCGAGAAAAGAAAGAAAATAAAGTGTCTCCCGTGTTTTTTGTCCTAATCGATCTGGGGGAACTCCTCCCTTTCTCACAACACACAATGTTTTTGAGTCTGGGAGAAACGTCGGAGGCCGGCCGTTCGGTCATTTGACACCTTTGCATAGGCATCGCTTCGTATCATTCTTTCACTTTTTGTTACTCTTAAACTAAACTATTGAAAGCTGGCAGAGAAATACGATTCCCTTCTCTTTTGAATTATTCGTTTTGTTTTCTATGTCGACCCCTCAAATTCTACTGTTCATCAGCACCAGATTATCCAAAAATCTACTCGAGACTCACTTTCGCTGAAAAACTTGTTCACCTCTAGTTCTGAAGTGTTTTCATGATGGTGAATAGTTTTAAATGTAGCAAAATTTTGTATTATGTAGWATCTTTATTCGATATTCAAATCTAAATAGAAATACAATGTTTTCATAGTAGCCCACCGAAACCGTCAATTTGGAGCCTAATTATCCTTATTCCTGTGAAAAATATCAAAAATGTGTCAACTGATAAATTATTTATCATAATATCTCCAATATTTCATCTGTTGACAGATTTTTGAAATCTCTCGTGGGAACCGAGATAATTGAGCTCAAAATTGACGATTTGACCAAACTTTCGAAACTGATTTTAAAAACCAAAATCAGTTTGAATGAAAATTTCTGATAAATATCCAAGGATTGAATCTACTTTTTTTAAATTTTAAAATTTTCAATTTAGGTCTCCAGAAAAAGGAATGAACTTTGATAAAGAGTTGAAAGATAATTAAATAGTTCTAAAAATAATTTTTAAAAACAAAAAAAACTGTCATAATGTACCTCTAATATCAGAAGCCCGACCAAACCGTCAACTTTGAGATCAATTATTTTGATTCATGTGGGAGATAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTGTTTTCATGATGGTGAATAGT</pcr_primer_p1>
		<pcr_primer_p2>ATCAGAAATTTTCATTCAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>335</pcr_amplicon_size>
		<canonical_amplicon>GTGTTTTCATGATGGTGAATAGTTTTAAATGTAGCAAAATTTTGTATTATGTAGTATCTTTATTCGATATTCAAATCTAAATAGAAATACAATGTTTTCATAGTAGCCCACCGAAACCGTCAATTTGGAGCCTAATTATCCTTATTCCTGTGAAAAATATCAAAAATGTGTCAACTGATAAATTATTTATCATAATATCTCCAATATTTCATCTGTTGACAGATTTTTGAAATCTCTCGTGGGAACCGAGATAATTGAGCTCAAAATTGACGATTTGACCAAACTTTCGAAACTGATTTTAAAAACCAAAATCAGTTTGAATGAAAATTTCTGAT</canonical_amplicon>
		<polymorphic_amplicon>GTGTTTTCATGATGGTGAATAGTTTTAAATGTAGCAAAATTTTGTATTATGTAGWATCTTTATTCGATATTCAAATCTAAATAGAAATACAATGTTTTCATAGTAGCCCACCGAAACCGTCAATTTGGAGCCTAATTATCCTTATTCCTGTGAAAAATATCAAAAATGTGTCAACTGATAAATTATTTATCATAATATCTCCAATATTTCATCTGTTGACAGATTTTTGAAATCTCTCGTGGGAACCGAGATAATTGAGCTCAAAATTGACGATTTGACCAAACTTTCGAAACTGATTTTAAAAACCAAAATCAGTTTGAATGAAAATTTCTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39257</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>295854</contig_pos>
        <strand></strand>
        <context>AAATAGAAAT[A/G]CAATGTTTTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTGTATTATGTAGTATCTTTATTCGATATTCAAATCTAAATAGAAAT</left_flank>
        <right_flank>CAATGTTTTCATAGTAGCCCACCGAAACCGTCAATTTGGAGCCTAATTAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCCCGGAGCAAGTGCGCACTGCTCTTCCGACCACGAACCACACCTCCAAATTCGAGAAAAGAAAGAAAATAAAGTGTCTCCCGTGTTTTTTGTCCTAATCGATCTGGGGGAACTCCTCCCTTTCTCACAACACACAATGTTTTTGAGTCTGGGAGAAACGTCGGAGGCCGGCCGTTCGGTCATTTGACACCTTTGCATAGGCATCGCTTCGTATCATTCTTTCACTTTTTGTTACTCTTAAACTAAACTATTGAAAGCTGGCAGAGAAATACGATTCCCTTCTCTTTTGAATTATTCGTTTTGTTTTCTATGTCGACCCCTCAAATTCTACTGTTCATCAGCACCAGATTATCCAAAAATCTACTCGAGACTCACTTTCGCTGAAAAACTTGTTCACCTCTAGTTCTGAAGTGTTTTCATGATGGTGAATAGTTTTAAATGTAGCAAAATTTTGTATTATGTAGTATCTTTATTCGATATTCAAATCTAAATAGAAATACAATGTTTTCATAGTAGCCCACCGAAACCGTCAATTTGGAGCCTAATTATCCTTATTCCTGTGAAAAATATCAAAAATGTGTCAACTGATAAATTATTTATCATAATATCTCCAATATTTCATCTGTTGACAGATTTTTGAAATCTCTCGTGGGAACCGAGATAATTGAGCTCAAAATTGACGATTTGACCAAACTTTCGAAACTGATTTTAAAAACCAAAATCAGTTTGAATGAAAATTTCTGATAAATATCCAAGGATTGAATCTACTTTTTTTAAATTTTAAAATTTTCAATTTAGGTCTCCAGAAAAAGGAATGAACTTTGATAAAGAGTTGAAAGATAATTAAATAGTTCTAAAAATAATTTTTAAAAACAAAAAAAACTGTCATAATGTACCTCTAATATCAGAAGCCCGACCAAACCGTCAACTTTGAGATCAATTATTTTGATTCATGTGGGAGATATCAAAGTTTTGTCAACAGATAAAATAGTTGTGATA</canonical>
            <polymorphic>GCCCCGGAGCAAGTGCGCACTGCTCTTCCGACCACGAACCACACCTCCAAATTCGAGAAAAGAAAGAAAATAAAGTGTCTCCCGTGTTTTTTGTCCTAATCGATCTGGGGGAACTCCTCCCTTTCTCACAACACACAATGTTTTTGAGTCTGGGAGAAACGTCGGAGGCCGGCCGTTCGGTCATTTGACACCTTTGCATAGGCATCGCTTCGTATCATTCTTTCACTTTTTGTTACTCTTAAACTAAACTATTGAAAGCTGGCAGAGAAATACGATTCCCTTCTCTTTTGAATTATTCGTTTTGTTTTCTATGTCGACCCCTCAAATTCTACTGTTCATCAGCACCAGATTATCCAAAAATCTACTCGAGACTCACTTTCGCTGAAAAACTTGTTCACCTCTAGTTCTGAAGTGTTTTCATGATGGTGAATAGTTTTAAATGTAGCAAAATTTTGTATTATGTAGTATCTTTATTCGATATTCAAATCTAAATAGAAATRCAATGTTTTCATAGTAGCCCACCGAAACCGTCAATTTGGAGCCTAATTATCCTTATTCCTGTGAAAAATATCAAAAATGTGTCAACTGATAAATTATTTATCATAATATCTCCAATATTTCATCTGTTGACAGATTTTTGAAATCTCTCGTGGGAACCGAGATAATTGAGCTCAAAATTGACGATTTGACCAAACTTTCGAAACTGATTTTAAAAACCAAAATCAGTTTGAATGAAAATTTCTGATAAATATCCAAGGATTGAATCTACTTTTTTTAAATTTTAAAATTTTCAATTTAGGTCTCCAGAAAAAGGAATGAACTTTGATAAAGAGTTGAAAGATAATTAAATAGTTCTAAAAATAATTTTTAAAAACAAAAAAAACTGTCATAATGTACCTCTAATATCAGAAGCCCGACCAAACCGTCAACTTTGAGATCAATTATTTTGATTCATGTGGGAGATATCAAAGTTTTGTCAACAGATAAAATAGTTGTGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATGGTGAATAGTTTTAAATGTAGC</pcr_primer_p1>
		<pcr_primer_p2>ATCAGAAATTTTCATTCAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>325</pcr_amplicon_size>
		<canonical_amplicon>GATGGTGAATAGTTTTAAATGTAGCAAAATTTTGTATTATGTAGTATCTTTATTCGATATTCAAATCTAAATAGAAATACAATGTTTTCATAGTAGCCCACCGAAACCGTCAATTTGGAGCCTAATTATCCTTATTCCTGTGAAAAATATCAAAAATGTGTCAACTGATAAATTATTTATCATAATATCTCCAATATTTCATCTGTTGACAGATTTTTGAAATCTCTCGTGGGAACCGAGATAATTGAGCTCAAAATTGACGATTTGACCAAACTTTCGAAACTGATTTTAAAAACCAAAATCAGTTTGAATGAAAATTTCTGAT</canonical_amplicon>
		<polymorphic_amplicon>GATGGTGAATAGTTTTAAATGTAGCAAAATTTTGTATTATGTAGTATCTTTATTCGATATTCAAATCTAAATAGAAATRCAATGTTTTCATAGTAGCCCACCGAAACCGTCAATTTGGAGCCTAATTATCCTTATTCCTGTGAAAAATATCAAAAATGTGTCAACTGATAAATTATTTATCATAATATCTCCAATATTTCATCTGTTGACAGATTTTTGAAATCTCTCGTGGGAACCGAGATAATTGAGCTCAAAATTGACGATTTGACCAAACTTTCGAAACTGATTTTAAAAACCAAAATCAGTTTGAATGAAAATTTCTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39258</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>296031</contig_pos>
        <strand></strand>
        <context>tgagctcaaa[A/G]ttgacgattt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGACAGATTTTTGAAATCTCTCGTGGGAACCGAGATAATTGAGCTCAAA</left_flank>
        <right_flank>TTGACGATTTGACCAAACTTTCGAAACTGATTTTAAAAACCAAAATCAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGGTCATTTGACACCTTTGCATAGGCATCGCTTCGTATCATTCTTTCACTTTTTGTTACTCTTAAACTAAACTATTGAAAGCTGGCAGAGAAATACGATTCCCTTCTCTTTTGAATTATTCGTTTTGTTTTCTATGTCGACCCCTCAAATTCTACTGTTCATCAGCACCAGATTATCCAAAAATCTACTCGAGACTCACTTTCGCTGAAAAACTTGTTCACCTCTAGTTCTGAAGTGTTTTCATGATGGTGAATAGTTTTAAATGTAGCAAAATTTTGTATTATGTAGTATCTTTATTCGATATTCAAATCTAAATAGAAATACAATGTTTTCATAGTAGCCCACCGAAACCGTCAATTTGGAGCCTAATTATCCTTATTCCTGTGAAAAATATCAAAAATGTGTCAACTGATAAATTATTTATCATAATATCTCCAATATTTCATCTGTTGACAGATTTTTGAAATCTCTCGTGGGAACCGAGATAATTGAGCTCAAAATTGACGATTTGACCAAACTTTCGAAACTGATTTTAAAAACCAAAATCAGTTTGAATGAAAATTTCTGATAAATATCCAAGGATTGAATCTACTTTTTTTAAATTTTAAAATTTTCAATTTAGGTCTCCAGAAAAAGGAATGAACTTTGATAAAGAGTTGAAAGATAATTAAATAGTTCTAAAAATAATTTTTAAAAACAAAAAAAACTGTCATAATGTACCTCTAATATCAGAAGCCCGACCAAACCGTCAACTTTGAGATCAATTATTTTGATTCATGTGGGAGATATCAAAGTTTTGTCAACAGATAAAATAGTTGTGATATTATGATGAATGATTTGTTAGTTGTCAAATGCCTGATATCTTTTACAGAACTCGAGATAATTGATCTCAAAATTCACAGTTTGGGCCGGCTTCTATTAGAGGAAATACGATAGAAACATTTCAAATTCAGTTTTCTGGAGTTAATTAGCAATTAAGGTTCTTCAATAACTTGAATTT</canonical>
            <polymorphic>CGGTCATTTGACACCTTTGCATAGGCATCGCTTCGTATCATTCTTTCACTTTTTGTTACTCTTAAACTAAACTATTGAAAGCTGGCAGAGAAATACGATTCCCTTCTCTTTTGAATTATTCGTTTTGTTTTCTATGTCGACCCCTCAAATTCTACTGTTCATCAGCACCAGATTATCCAAAAATCTACTCGAGACTCACTTTCGCTGAAAAACTTGTTCACCTCTAGTTCTGAAGTGTTTTCATGATGGTGAATAGTTTTAAATGTAGCAAAATTTTGTATTATGTAGTATCTTTATTCGATATTCAAATCTAAATAGAAATACAATGTTTTCATAGTAGCCCACCGAAACCGTCAATTTGGAGCCTAATTATCCTTATTCCTGTGAAAAATATCAAAAATGTGTCAACTGATAAATTATTTATCATAATATCTCCAATATTTCATCTGTTGACAGATTTTTGAAATCTCTCGTGGGAACCGAGATAATTGAGCTCAAARTTGACGATTTGACCAAACTTTCGAAACTGATTTTAAAAACCAAAATCAGTTTGAATGAAAATTTCTGATAAATATCCAAGGATTGAATCTACTTTTTTTAAATTTTAAAATTTTCAATTTAGGTCTCCAGAAAAAGGAATGAACTTTGATAAAGAGTTGAAAGATAATTAAATAGTTCTAAAAATAATTTTTAAAAACAAAAAAAACTGTCATAATGTACCTCTAATATCAGAAGCCCGACCAAACCGTCAACTTTGAGATCAATTATTTTGATTCATGTGGGAGATATCAAAGTTTTGTCAACAGATAAAATAGTTGTGATATTATGATGAATGATTTGTTAGTTGTCAAATGCCTGATATCTTTTACAGAACTCGAGATAATTGATCTCAAAATTCACAGTTTGGGCCGGCTTCTATTAGAGGAAATACGATAGAAACATTTCAAATTCAGTTTTCTGGAGTTAATTAGCAATTAAGGTTCTTCAATAACTTGAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>124 119 113 84 77 72 61 53 50 47 41 34 23 20 19 12 12 12 8 7 7 5</canonical_bands>
                <polymorphic_bands>124 119 113 84 77 73 72 53 50 47 41 34 23 20 19 12 12 8 7 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATGGTGAATAGTTTTAAATGTAGC</pcr_primer_p1>
		<pcr_primer_p2>ATCAGAAATTTTCATTCAAACTG</pcr_primer_p2>
		<pcr_amplicon_size>325</pcr_amplicon_size>
		<canonical_amplicon>GATGGTGAATAGTTTTAAATGTAGCAAAATTTTGTATTATGTAGTATCTTTATTCGATATTCAAATCTAAATAGAAATACAATGTTTTCATAGTAGCCCACCGAAACCGTCAATTTGGAGCCTAATTATCCTTATTCCTGTGAAAAATATCAAAAATGTGTCAACTGATAAATTATTTATCATAATATCTCCAATATTTCATCTGTTGACAGATTTTTGAAATCTCTCGTGGGAACCGAGATAATTGAGCTCAAAATTGACGATTTGACCAAACTTTCGAAACTGATTTTAAAAACCAAAATCAGTTTGAATGAAAATTTCTGAT</canonical_amplicon>
		<polymorphic_amplicon>GATGGTGAATAGTTTTAAATGTAGCAAAATTTTGTATTATGTAGTATCTTTATTCGATATTCAAATCTAAATAGAAATACAATGTTTTCATAGTAGCCCACCGAAACCGTCAATTTGGAGCCTAATTATCCTTATTCCTGTGAAAAATATCAAAAATGTGTCAACTGATAAATTATTTATCATAATATCTCCAATATTTCATCTGTTGACAGATTTTTGAAATCTCTCGTGGGAACCGAGATAATTGAGCTCAAARTTGACGATTTGACCAAACTTTCGAAACTGATTTTAAAAACCAAAATCAGTTTGAATGAAAATTTCTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39259</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>296191</contig_pos>
        <strand></strand>
        <context>TAAAGAGTTG[A/G]AAGataatta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTCAATTTAGGTCTCCAGAAAAAGGAATGAACTTTGATAAAGAGTTG</left_flank>
        <right_flank>AAGATAATTAAATAGTTCTAAAAATAATTTTTAAAAACAAAAAAAACTGT</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCAGCACCAGATTATCCAAAAATCTACTCGAGACTCACTTTCGCTGAAAAACTTGTTCACCTCTAGTTCTGAAGTGTTTTCATGATGGTGAATAGTTTTAAATGTAGCAAAATTTTGTATTATGTAGTATCTTTATTCGATATTCAAATCTAAATAGAAATACAATGTTTTCATAGTAGCCCACCGAAACCGTCAATTTGGAGCCTAATTATCCTTATTCCTGTGAAAAATATCAAAAATGTGTCAACTGATAAATTATTTATCATAATATCTCCAATATTTCATCTGTTGACAGATTTTTGAAATCTCTCGTGGGAACCGAGATAATTGAGCTCAAAATTGACGATTTGACCAAACTTTCGAAACTGATTTTAAAAACCAAAATCAGTTTGAATGAAAATTTCTGATAAATATCCAAGGATTGAATCTACTTTTTTTAAATTTTAAAATTTTCAATTTAGGTCTCCAGAAAAAGGAATGAACTTTGATAAAGAGTTGAAAGATAATTAAATAGTTCTAAAAATAATTTTTAAAAACAAAAAAAACTGTCATAATGTACCTCTAATATCAGAAGCCCGACCAAACCGTCAACTTTGAGATCAATTATTTTGATTCATGTGGGAGATATCAAAGTTTTGTCAACAGATAAAATAGTTGTGATATTATGATGAATGATTTGTTAGTTGTCAAATGCCTGATATCTTTTACAGAACTCGAGATAATTGATCTCAAAATTCACAGTTTGGGCCGGCTTCTATTAGAGGAAATACGATAGAAACATTTCAAATTCAGTTTTCTGGAGTTAATTAGCAATTAAGGTTCTTCAATAACTTGAATTTTGAAAACCAAAAACTTTCTTTTCCAACTTTCCATCAAAGTCGTCGTTGACCTAATTATATTGCCCTCCAAAAAAACCGGCCACTACTCACACTTTTTTACTCAATGATGTTGAACTCTAATTTTCTGAAAACTTGAAATGTTGGCACAATTCTTTTGAGA</canonical>
            <polymorphic>ATCAGCACCAGATTATCCAAAAATCTACTCGAGACTCACTTTCGCTGAAAAACTTGTTCACCTCTAGTTCTGAAGTGTTTTCATGATGGTGAATAGTTTTAAATGTAGCAAAATTTTGTATTATGTAGTATCTTTATTCGATATTCAAATCTAAATAGAAATACAATGTTTTCATAGTAGCCCACCGAAACCGTCAATTTGGAGCCTAATTATCCTTATTCCTGTGAAAAATATCAAAAATGTGTCAACTGATAAATTATTTATCATAATATCTCCAATATTTCATCTGTTGACAGATTTTTGAAATCTCTCGTGGGAACCGAGATAATTGAGCTCAAAATTGACGATTTGACCAAACTTTCGAAACTGATTTTAAAAACCAAAATCAGTTTGAATGAAAATTTCTGATAAATATCCAAGGATTGAATCTACTTTTTTTAAATTTTAAAATTTTCAATTTAGGTCTCCAGAAAAAGGAATGAACTTTGATAAAGAGTTGRAAGATAATTAAATAGTTCTAAAAATAATTTTTAAAAACAAAAAAAACTGTCATAATGTACCTCTAATATCAGAAGCCCGACCAAACCGTCAACTTTGAGATCAATTATTTTGATTCATGTGGGAGATATCAAAGTTTTGTCAACAGATAAAATAGTTGTGATATTATGATGAATGATTTGTTAGTTGTCAAATGCCTGATATCTTTTACAGAACTCGAGATAATTGATCTCAAAATTCACAGTTTGGGCCGGCTTCTATTAGAGGAAATACGATAGAAACATTTCAAATTCAGTTTTCTGGAGTTAATTAGCAATTAAGGTTCTTCAATAACTTGAATTTTGAAAACCAAAAACTTTCTTTTCCAACTTTCCATCAAAGTCGTCGTTGACCTAATTATATTGCCCTCCAAAAAAACCGGCCACTACTCACACTTTTTTACTCAATGATGTTGAACTCTAATTTTCTGAAAACTTGAAATGTTGGCACAATTCTTTTGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTGATAAATATCCAAGGATTG</pcr_primer_p1>
		<pcr_primer_p2>TGAATTTGAAATGTTTCTATCGT</pcr_primer_p2>
		<pcr_amplicon_size>390</pcr_amplicon_size>
		<canonical_amplicon>TTCTGATAAATATCCAAGGATTGAATCTACTTTTTTTAAATTTTAAAATTTTCAATTTAGGTCTCCAGAAAAAGGAATGAACTTTGATAAAGAGTTGAAAGATAATTAAATAGTTCTAAAAATAATTTTTAAAAACAAAAAAAACTGTCATAATGTACCTCTAATATCAGAAGCCCGACCAAACCGTCAACTTTGAGATCAATTATTTTGATTCATGTGGGAGATATCAAAGTTTTGTCAACAGATAAAATAGTTGTGATATTATGATGAATGATTTGTTAGTTGTCAAATGCCTGATATCTTTTACAGAACTCGAGATAATTGATCTCAAAATTCACAGTTTGGGCCGGCTTCTATTAGAGGAAATACGATAGAAACATTTCAAATTCA</canonical_amplicon>
		<polymorphic_amplicon>TTCTGATAAATATCCAAGGATTGAATCTACTTTTTTTAAATTTTAAAATTTTCAATTTAGGTCTCCAGAAAAAGGAATGAACTTTGATAAAGAGTTGRAAGATAATTAAATAGTTCTAAAAATAATTTTTAAAAACAAAAAAAACTGTCATAATGTACCTCTAATATCAGAAGCCCGACCAAACCGTCAACTTTGAGATCAATTATTTTGATTCATGTGGGAGATATCAAAGTTTTGTCAACAGATAAAATAGTTGTGATATTATGATGAATGATTTGTTAGTTGTCAAATGCCTGATATCTTTTACAGAACTCGAGATAATTGATCTCAAAATTCACAGTTTGGGCCGGCTTCTATTAGAGGAAATACGATAGAAACATTTCAAATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39260</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>314201</contig_pos>
        <strand>+</strand>
        <context>ATGCTTTTGA[C/T]TCTGAATWAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGCCGCAGTCATCCAACAATAACGGTCAGACATTTTCATATGCTTTTGA</left_flank>
        <right_flank>TCTGAATAATATTTTTGTGATGCTTCTTTTTTGAAAATACGGAGGAGAGT</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGATTTCGTATCATCGAGAAGAAAAAATCGTATATTCTCGGACGAAGACGATCAAGACTCGAATCTTGGAAGTGGCCAATACCTGGCAGCTCCTCTGAACGACGCTCGTCGCTCGGCGTCTCCATCTTTGTACGTACCTCCAGAACATCTCCGAGGATATCAAAGTAGTAAATCAATGATGAATTTACGGTAAGCAAGTTTTTTTTGTCTGAATAACGCATTTCTCTTTACCTGAATCATTTTCTAGGGACGTAACGGGCGGTGGTGTCCGAGTACAGACTGCCAAAGAACTCATGATGTCGCACATTGCATCACAACGTAATTCGCAGTCTGGTGAGTTTTATTATCATTCGCAGCTGCTTTTATGATCGTTTTCCTATTTCTTTTCCAGGATCCTCTTCCCACTTGTCATCAGCGAACACATCTGGACGAATGAAGTGGGGAGATATGCCGCAGTCATCCAACAATAACGGTCAGACATTTTCATATGCTTTTGACTCTGAATAATATTTTTGTGATGCTTCTTTTTTGAAAATACGGAGGAGAGTTGCTAGGTGCTTCGTTCTTTATTGGCTCAAGAGGAGAATATGTTTCGAAACAGTGAAGACCCAAAGATTTTTGGAGAGCTAGTTGTTAAAATTGATTTTGTAGTTAGAATTCATACATGTGACGGGTCGGAACGTTATTCTTGAGATAGTCTTTTCGACATACAGTACCGCCCTTTAAAATATACAAGAATGGAGTTTTCAGTTTATTTTTGAACATTTTGACCATTTTGTCAAGTTTCCGATTACTTTGAAAATTGAAGAAGGTATACAACAGACCTAGATTAAAAATTTTGCATTCACAGAATTTTTAAAAAATTCGTAATTTTTCAGCTATTTGCCGATTTCTGAAAGAACCTTTTTTCACATTTTCAGTACAAAAACTGGTCAAAATGGGACATCTTTCAGAAATCGGCAATCATCTGGAAACTAGAAATTTTCAAAATATTTTTT</canonical>
            <polymorphic>TCGGATTTCGTATCATCGAGAAGAAAAAATCGTATATTCTCGGACGAAGACGATCAAGACTCGAATCTTGGAAGTGGCCAATACCTGGCAGCTCCTCTGAACGACGCTCGTCGCTCGGCGTCTCCATCTTTGTACGTACCTCCAGAACATCTCCGAGGATATCAAAGTAGTAAATCAATGATGAATTTACGGTAAGCAAGTTTTTTTTGTCTGAATAACGCATTTCTCTTTACCTGAATCATTTTCTAGGGACGTAACGGGCGGTGGTGTCCGAGTACAGACTGCCAAAGAACTCATGATGTCGCACATTGCATCACAACGTAATTCGCAGTCTGGTGAGTTTTATTATCATTCGCAGCTGCTTTTATGATCGTTTTCCTATTTCTTTTCCAGGATCCTCTTCCCACTTGTCATCAGCGAACACATCTGGACGAATGAAGTGGGGAGATATGCCGCAGTCATCCAACAATAACGGTCAGACATTTTCATATGCTTTTGAYTCTGAATAATATTTTTGTGATGCTTCTTTTTTGAAAATACGGAGGAGAGTTGCTAGGTGCTTCGTTCTTTATTGGCTCAAGAGGAGAATATGTTTCGAAACAGTGAAGACCCAAAGATTTTTGGAGAGCTAGTTGTTAAAATTGATTTTGTAGTTAGAATTCATACATGTGACGGGTCGGAACGTTATTCTTGAGATAGTCTTTTCGACATACAGTACCGCCCTTTAAAATATACAAGAATGGAGTTTTCAGTTTATTTTTGAACATTTTGACCATTTTGTCAAGTTTCCGATTACTTTGAAAATTGAAGAAGGTATACAACAGACCTAGATTAAAAATTTTGCATTCACAGAATTTTTAAAAAATTCGTAATTTTTCAGCTATTTGCCGATTTCTGAAAGAACCTTTTTTCACATTTTCAGTACAAAAACTGGTCAAAATGGGACATCTTTCAGAAATCGGCAATCATCTGGAAACTAGAAATTTTCAAAATATTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGATCGTTTTCCTATTTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATCTTTGGGTCTTCACTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATGATCGTTTTCCTATTTCTTTTCCAGGATCCTCTTCCCACTTGTCATCAGCGAACACATCTGGACGAATGAAGTGGGGAGATATGCCGCAGTCATCCAACAATAACGGTCAGACATTTTCATATGCTTTTGACTCTGAATAATATTTTTGTGATGCTTCTTTTTTGAAAATACGGAGGAGAGTTGCTAGGTGCTTCGTTCTTTATTGGCTCAAGAGGAGAATATGTTTCGAAACAGTGAAGACCCAAAGAT</canonical_amplicon>
		<polymorphic_amplicon>ATGATCGTTTTCCTATTTCTTTTCCAGGATCCTCTTCCCACTTGTCATCAGCGAACACATCTGGACGAATGAAGTGGGGAGATATGCCGCAGTCATCCAACAATAACGGTCAGACATTTTCATATGCTTTTGAYTCTGAATAATATTTTTGTGATGCTTCTTTTTTGAAAATACGGAGGAGAGTTGCTAGGTGCTTCGTTCTTTATTGGCTCAAGAGGAGAATATGTTTCGAAACAGTGAAGACCCAAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39261</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>314209</contig_pos>
        <strand>+</strand>
        <context>GAYTCTGAAT[A/T]ATATTTTTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCATCCAACAATAACGGTCAGACATTTTCATATGCTTTTGACTCTGAAT</left_flank>
        <right_flank>ATATTTTTGTGATGCTTCTTTTTTGAAAATACGGAGGAGAGTTGCTAGGT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTATCATCGAGAAGAAAAAATCGTATATTCTCGGACGAAGACGATCAAGACTCGAATCTTGGAAGTGGCCAATACCTGGCAGCTCCTCTGAACGACGCTCGTCGCTCGGCGTCTCCATCTTTGTACGTACCTCCAGAACATCTCCGAGGATATCAAAGTAGTAAATCAATGATGAATTTACGGTAAGCAAGTTTTTTTTGTCTGAATAACGCATTTCTCTTTACCTGAATCATTTTCTAGGGACGTAACGGGCGGTGGTGTCCGAGTACAGACTGCCAAAGAACTCATGATGTCGCACATTGCATCACAACGTAATTCGCAGTCTGGTGAGTTTTATTATCATTCGCAGCTGCTTTTATGATCGTTTTCCTATTTCTTTTCCAGGATCCTCTTCCCACTTGTCATCAGCGAACACATCTGGACGAATGAAGTGGGGAGATATGCCGCAGTCATCCAACAATAACGGTCAGACATTTTCATATGCTTTTGACTCTGAATAATATTTTTGTGATGCTTCTTTTTTGAAAATACGGAGGAGAGTTGCTAGGTGCTTCGTTCTTTATTGGCTCAAGAGGAGAATATGTTTCGAAACAGTGAAGACCCAAAGATTTTTGGAGAGCTAGTTGTTAAAATTGATTTTGTAGTTAGAATTCATACATGTGACGGGTCGGAACGTTATTCTTGAGATAGTCTTTTCGACATACAGTACCGCCCTTTAAAATATACAAGAATGGAGTTTTCAGTTTATTTTTGAACATTTTGACCATTTTGTCAAGTTTCCGATTACTTTGAAAATTGAAGAAGGTATACAACAGACCTAGATTAAAAATTTTGCATTCACAGAATTTTTAAAAAATTCGTAATTTTTCAGCTATTTGCCGATTTCTGAAAGAACCTTTTTTCACATTTTCAGTACAAAAACTGGTCAAAATGGGACATCTTTCAGAAATCGGCAATCATCTGGAAACTAGAAATTTTCAAAATATTTTTTGAATGCAA</canonical>
            <polymorphic>CGTATCATCGAGAAGAAAAAATCGTATATTCTCGGACGAAGACGATCAAGACTCGAATCTTGGAAGTGGCCAATACCTGGCAGCTCCTCTGAACGACGCTCGTCGCTCGGCGTCTCCATCTTTGTACGTACCTCCAGAACATCTCCGAGGATATCAAAGTAGTAAATCAATGATGAATTTACGGTAAGCAAGTTTTTTTTGTCTGAATAACGCATTTCTCTTTACCTGAATCATTTTCTAGGGACGTAACGGGCGGTGGTGTCCGAGTACAGACTGCCAAAGAACTCATGATGTCGCACATTGCATCACAACGTAATTCGCAGTCTGGTGAGTTTTATTATCATTCGCAGCTGCTTTTATGATCGTTTTCCTATTTCTTTTCCAGGATCCTCTTCCCACTTGTCATCAGCGAACACATCTGGACGAATGAAGTGGGGAGATATGCCGCAGTCATCCAACAATAACGGTCAGACATTTTCATATGCTTTTGACTCTGAATWATATTTTTGTGATGCTTCTTTTTTGAAAATACGGAGGAGAGTTGCTAGGTGCTTCGTTCTTTATTGGCTCAAGAGGAGAATATGTTTCGAAACAGTGAAGACCCAAAGATTTTTGGAGAGCTAGTTGTTAAAATTGATTTTGTAGTTAGAATTCATACATGTGACGGGTCGGAACGTTATTCTTGAGATAGTCTTTTCGACATACAGTACCGCCCTTTAAAATATACAAGAATGGAGTTTTCAGTTTATTTTTGAACATTTTGACCATTTTGTCAAGTTTCCGATTACTTTGAAAATTGAAGAAGGTATACAACAGACCTAGATTAAAAATTTTGCATTCACAGAATTTTTAAAAAATTCGTAATTTTTCAGCTATTTGCCGATTTCTGAAAGAACCTTTTTTCACATTTTCAGTACAAAAACTGGTCAAAATGGGACATCTTTCAGAAATCGGCAATCATCTGGAAACTAGAAATTTTCAAAATATTTTTTGAATGCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 483 15</canonical_bands>
                <polymorphic_bands>985 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGATCGTTTTCCTATTTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATCTTTGGGTCTTCACTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATGATCGTTTTCCTATTTCTTTTCCAGGATCCTCTTCCCACTTGTCATCAGCGAACACATCTGGACGAATGAAGTGGGGAGATATGCCGCAGTCATCCAACAATAACGGTCAGACATTTTCATATGCTTTTGACTCTGAATAATATTTTTGTGATGCTTCTTTTTTGAAAATACGGAGGAGAGTTGCTAGGTGCTTCGTTCTTTATTGGCTCAAGAGGAGAATATGTTTCGAAACAGTGAAGACCCAAAGAT</canonical_amplicon>
		<polymorphic_amplicon>ATGATCGTTTTCCTATTTCTTTTCCAGGATCCTCTTCCCACTTGTCATCAGCGAACACATCTGGACGAATGAAGTGGGGAGATATGCCGCAGTCATCCAACAATAACGGTCAGACATTTTCATATGCTTTTGACTCTGAATWATATTTTTGTGATGCTTCTTTTTTGAAAATACGGAGGAGAGTTGCTAGGTGCTTCGTTCTTTATTGGCTCAAGAGGAGAATATGTTTCGAAACAGTGAAGACCCAAAGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39262</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>314243</contig_pos>
        <strand>+</strand>
        <context>TGAAAATACG[G/T]AGGAGAKTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCTTTTGACTCTGAATAATATTTTTGTGATGCTTCTTTTTTGAAAATACG</left_flank>
        <right_flank>AGGAGAGTTGCTAGGTGCTTCGTTCTTTATTGGCTCAAGAGGAGAATATG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACGAAGACGATCAAGACTCGAATCTTGGAAGTGGCCAATACCTGGCAGCTCCTCTGAACGACGCTCGTCGCTCGGCGTCTCCATCTTTGTACGTACCTCCAGAACATCTCCGAGGATATCAAAGTAGTAAATCAATGATGAATTTACGGTAAGCAAGTTTTTTTTGTCTGAATAACGCATTTCTCTTTACCTGAATCATTTTCTAGGGACGTAACGGGCGGTGGTGTCCGAGTACAGACTGCCAAAGAACTCATGATGTCGCACATTGCATCACAACGTAATTCGCAGTCTGGTGAGTTTTATTATCATTCGCAGCTGCTTTTATGATCGTTTTCCTATTTCTTTTCCAGGATCCTCTTCCCACTTGTCATCAGCGAACACATCTGGACGAATGAAGTGGGGAGATATGCCGCAGTCATCCAACAATAACGGTCAGACATTTTCATATGCTTTTGACTCTGAATAATATTTTTGTGATGCTTCTTTTTTGAAAATACGGAGGAGAGTTGCTAGGTGCTTCGTTCTTTATTGGCTCAAGAGGAGAATATGTTTCGAAACAGTGAAGACCCAAAGATTTTTGGAGAGCTAGTTGTTAAAATTGATTTTGTAGTTAGAATTCATACATGTGACGGGTCGGAACGTTATTCTTGAGATAGTCTTTTCGACATACAGTACCGCCCTTTAAAATATACAAGAATGGAGTTTTCAGTTTATTTTTGAACATTTTGACCATTTTGTCAAGTTTCCGATTACTTTGAAAATTGAAGAAGGTATACAACAGACCTAGATTAAAAATTTTGCATTCACAGAATTTTTAAAAAATTCGTAATTTTTCAGCTATTTGCCGATTTCTGAAAGAACCTTTTTTCACATTTTCAGTACAAAAACTGGTCAAAATGGGACATCTTTCAGAAATCGGCAATCATCTGGAAACTAGAAATTTTCAAAATATTTTTTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACATCCTCCGA</canonical>
            <polymorphic>GACGAAGACGATCAAGACTCGAATCTTGGAAGTGGCCAATACCTGGCAGCTCCTCTGAACGACGCTCGTCGCTCGGCGTCTCCATCTTTGTACGTACCTCCAGAACATCTCCGAGGATATCAAAGTAGTAAATCAATGATGAATTTACGGTAAGCAAGTTTTTTTTGTCTGAATAACGCATTTCTCTTTACCTGAATCATTTTCTAGGGACGTAACGGGCGGTGGTGTCCGAGTACAGACTGCCAAAGAACTCATGATGTCGCACATTGCATCACAACGTAATTCGCAGTCTGGTGAGTTTTATTATCATTCGCAGCTGCTTTTATGATCGTTTTCCTATTTCTTTTCCAGGATCCTCTTCCCACTTGTCATCAGCGAACACATCTGGACGAATGAAGTGGGGAGATATGCCGCAGTCATCCAACAATAACGGTCAGACATTTTCATATGCTTTTGACTCTGAATAATATTTTTGTGATGCTTCTTTTTTGAAAATACGKAGGAGAGTTGCTAGGTGCTTCGTTCTTTATTGGCTCAAGAGGAGAATATGTTTCGAAACAGTGAAGACCCAAAGATTTTTGGAGAGCTAGTTGTTAAAATTGATTTTGTAGTTAGAATTCATACATGTGACGGGTCGGAACGTTATTCTTGAGATAGTCTTTTCGACATACAGTACCGCCCTTTAAAATATACAAGAATGGAGTTTTCAGTTTATTTTTGAACATTTTGACCATTTTGTCAAGTTTCCGATTACTTTGAAAATTGAAGAAGGTATACAACAGACCTAGATTAAAAATTTTGCATTCACAGAATTTTTAAAAAATTCGTAATTTTTCAGCTATTTGCCGATTTCTGAAAGAACCTTTTTTCACATTTTCAGTACAAAAACTGGTCAAAATGGGACATCTTTCAGAAATCGGCAATCATCTGGAAACTAGAAATTTTCAAAATATTTTTTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACATCCTCCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAACGGTCAGACATTTTCATA</pcr_primer_p1>
		<pcr_primer_p2>TGTCGAAAAGACTATCTCAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AATAACGGTCAGACATTTTCATATGCTTTTGACTCTGAATAATATTTTTGTGATGCTTCTTTTTTGAAAATACGGAGGAGAGTTGCTAGGTGCTTCGTTCTTTATTGGCTCAAGAGGAGAATATGTTTCGAAACAGTGAAGACCCAAAGATTTTTGGAGAGCTAGTTGTTAAAATTGATTTTGTAGTTAGAATTCATACATGTGACGGGTCGGAACGTTATTCTTGAGATAGTCTTTTCGACA</canonical_amplicon>
		<polymorphic_amplicon>AATAACGGTCAGACATTTTCATATGCTTTTGACTCTGAATAATATTTTTGTGATGCTTCTTTTTTGAAAATACGKAGGAGAGTTGCTAGGTGCTTCGTTCTTTATTGGCTCAAGAGGAGAATATGTTTCGAAACAGTGAAGACCCAAAGATTTTTGGAGAGCTAGTTGTTAAAATTGATTTTGTAGTTAGAATTCATACATGTGACGGGTCGGAACGTTATTCTTGAGATAGTCTTTTCGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39263</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>314250</contig_pos>
        <strand></strand>
        <context>ACGKAGGAGA[G/T]TTGCTAGGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ACTCTGAATAATATTTTTGTGATGCTTCTTTTTTGAAAATACGGAGGAGA</left_flank>
        <right_flank>TTGCTAGGTGCTTCGTTCTTTATTGGCTCAAGAGGAGAATATGTTTCGAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGATCAAGACTCGAATCTTGGAAGTGGCCAATACCTGGCAGCTCCTCTGAACGACGCTCGTCGCTCGGCGTCTCCATCTTTGTACGTACCTCCAGAACATCTCCGAGGATATCAAAGTAGTAAATCAATGATGAATTTACGGTAAGCAAGTTTTTTTTGTCTGAATAACGCATTTCTCTTTACCTGAATCATTTTCTAGGGACGTAACGGGCGGTGGTGTCCGAGTACAGACTGCCAAAGAACTCATGATGTCGCACATTGCATCACAACGTAATTCGCAGTCTGGTGAGTTTTATTATCATTCGCAGCTGCTTTTATGATCGTTTTCCTATTTCTTTTCCAGGATCCTCTTCCCACTTGTCATCAGCGAACACATCTGGACGAATGAAGTGGGGAGATATGCCGCAGTCATCCAACAATAACGGTCAGACATTTTCATATGCTTTTGACTCTGAATAATATTTTTGTGATGCTTCTTTTTTGAAAATACGGAGGAGAGTTGCTAGGTGCTTCGTTCTTTATTGGCTCAAGAGGAGAATATGTTTCGAAACAGTGAAGACCCAAAGATTTTTGGAGAGCTAGTTGTTAAAATTGATTTTGTAGTTAGAATTCATACATGTGACGGGTCGGAACGTTATTCTTGAGATAGTCTTTTCGACATACAGTACCGCCCTTTAAAATATACAAGAATGGAGTTTTCAGTTTATTTTTGAACATTTTGACCATTTTGTCAAGTTTCCGATTACTTTGAAAATTGAAGAAGGTATACAACAGACCTAGATTAAAAATTTTGCATTCACAGAATTTTTAAAAAATTCGTAATTTTTCAGCTATTTGCCGATTTCTGAAAGAACCTTTTTTCACATTTTCAGTACAAAAACTGGTCAAAATGGGACATCTTTCAGAAATCGGCAATCATCTGGAAACTAGAAATTTTCAAAATATTTTTTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACATCCTCCGAAATTCGC</canonical>
            <polymorphic>ACGATCAAGACTCGAATCTTGGAAGTGGCCAATACCTGGCAGCTCCTCTGAACGACGCTCGTCGCTCGGCGTCTCCATCTTTGTACGTACCTCCAGAACATCTCCGAGGATATCAAAGTAGTAAATCAATGATGAATTTACGGTAAGCAAGTTTTTTTTGTCTGAATAACGCATTTCTCTTTACCTGAATCATTTTCTAGGGACGTAACGGGCGGTGGTGTCCGAGTACAGACTGCCAAAGAACTCATGATGTCGCACATTGCATCACAACGTAATTCGCAGTCTGGTGAGTTTTATTATCATTCGCAGCTGCTTTTATGATCGTTTTCCTATTTCTTTTCCAGGATCCTCTTCCCACTTGTCATCAGCGAACACATCTGGACGAATGAAGTGGGGAGATATGCCGCAGTCATCCAACAATAACGGTCAGACATTTTCATATGCTTTTGACTCTGAATAATATTTTTGTGATGCTTCTTTTTTGAAAATACGGAGGAGAKTTGCTAGGTGCTTCGTTCTTTATTGGCTCAAGAGGAGAATATGTTTCGAAACAGTGAAGACCCAAAGATTTTTGGAGAGCTAGTTGTTAAAATTGATTTTGTAGTTAGAATTCATACATGTGACGGGTCGGAACGTTATTCTTGAGATAGTCTTTTCGACATACAGTACCGCCCTTTAAAATATACAAGAATGGAGTTTTCAGTTTATTTTTGAACATTTTGACCATTTTGTCAAGTTTCCGATTACTTTGAAAATTGAAGAAGGTATACAACAGACCTAGATTAAAAATTTTGCATTCACAGAATTTTTAAAAAATTCGTAATTTTTCAGCTATTTGCCGATTTCTGAAAGAACCTTTTTTCACATTTTCAGTACAAAAACTGGTCAAAATGGGACATCTTTCAGAAATCGGCAATCATCTGGAAACTAGAAATTTTCAAAATATTTTTTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACATCCTCCGAAATTCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAACGGTCAGACATTTTCATA</pcr_primer_p1>
		<pcr_primer_p2>TGTCGAAAAGACTATCTCAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AATAACGGTCAGACATTTTCATATGCTTTTGACTCTGAATAATATTTTTGTGATGCTTCTTTTTTGAAAATACGGAGGAGAGTTGCTAGGTGCTTCGTTCTTTATTGGCTCAAGAGGAGAATATGTTTCGAAACAGTGAAGACCCAAAGATTTTTGGAGAGCTAGTTGTTAAAATTGATTTTGTAGTTAGAATTCATACATGTGACGGGTCGGAACGTTATTCTTGAGATAGTCTTTTCGACA</canonical_amplicon>
		<polymorphic_amplicon>AATAACGGTCAGACATTTTCATATGCTTTTGACTCTGAATAATATTTTTGTGATGCTTCTTTTTTGAAAATACGGAGGAGAKTTGCTAGGTGCTTCGTTCTTTATTGGCTCAAGAGGAGAATATGTTTCGAAACAGTGAAGACCCAAAGATTTTTGGAGAGCTAGTTGTTAAAATTGATTTTGTAGTTAGAATTCATACATGTGACGGGTCGGAACGTTATTCTTGAGATAGTCTTTTCGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39264</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>314325</contig_pos>
        <strand>+</strand>
        <context>AAGATTTTTG[C/G]AGAGCTAGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGCTCAAGAGGAGAATATGTTTCGAAACAGTGAAGACCCAAAGATTTTTG</left_flank>
        <right_flank>AGAGCTAGTTGTTAAAATTGATTTTGTAGTTAGAATTCATACATGTGACG</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCTTTGTACGTACCTCCAGAACATCTCCGAGGATATCAAAGTAGTAAATCAATGATGAATTTACGGTAAGCAAGTTTTTTTTGTCTGAATAACGCATTTCTCTTTACCTGAATCATTTTCTAGGGACGTAACGGGCGGTGGTGTCCGAGTACAGACTGCCAAAGAACTCATGATGTCGCACATTGCATCACAACGTAATTCGCAGTCTGGTGAGTTTTATTATCATTCGCAGCTGCTTTTATGATCGTTTTCCTATTTCTTTTCCAGGATCCTCTTCCCACTTGTCATCAGCGAACACATCTGGACGAATGAAGTGGGGAGATATGCCGCAGTCATCCAACAATAACGGTCAGACATTTTCATATGCTTTTGACTCTGAATAATATTTTTGTGATGCTTCTTTTTTGAAAATACGGAGGAGAGTTGCTAGGTGCTTCGTTCTTTATTGGCTCAAGAGGAGAATATGTTTCGAAACAGTGAAGACCCAAAGATTTTTGGAGAGCTAGTTGTTAAAATTGATTTTGTAGTTAGAATTCATACATGTGACGGGTCGGAACGTTATTCTTGAGATAGTCTTTTCGACATACAGTACCGCCCTTTAAAATATACAAGAATGGAGTTTTCAGTTTATTTTTGAACATTTTGACCATTTTGTCAAGTTTCCGATTACTTTGAAAATTGAAGAAGGTATACAACAGACCTAGATTAAAAATTTTGCATTCACAGAATTTTTAAAAAATTCGTAATTTTTCAGCTATTTGCCGATTTCTGAAAGAACCTTTTTTCACATTTTCAGTACAAAAACTGGTCAAAATGGGACATCTTTCAGAAATCGGCAATCATCTGGAAACTAGAAATTTTCAAAATATTTTTTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACATCCTCCGAAATTCGCAAAATGATCGGAAACTTGACGGCCGAGCTGCAGACTTCAGAAAAATGGTCAAAATGGCAAAAAAACTACCTGAAA</canonical>
            <polymorphic>CATCTTTGTACGTACCTCCAGAACATCTCCGAGGATATCAAAGTAGTAAATCAATGATGAATTTACGGTAAGCAAGTTTTTTTTGTCTGAATAACGCATTTCTCTTTACCTGAATCATTTTCTAGGGACGTAACGGGCGGTGGTGTCCGAGTACAGACTGCCAAAGAACTCATGATGTCGCACATTGCATCACAACGTAATTCGCAGTCTGGTGAGTTTTATTATCATTCGCAGCTGCTTTTATGATCGTTTTCCTATTTCTTTTCCAGGATCCTCTTCCCACTTGTCATCAGCGAACACATCTGGACGAATGAAGTGGGGAGATATGCCGCAGTCATCCAACAATAACGGTCAGACATTTTCATATGCTTTTGACTCTGAATAATATTTTTGTGATGCTTCTTTTTTGAAAATACGGAGGAGAGTTGCTAGGTGCTTCGTTCTTTATTGGCTCAAGAGGAGAATATGTTTCGAAACAGTGAAGACCCAAAGATTTTTGSAGAGCTAGTTGTTAAAATTGATTTTGTAGTTAGAATTCATACATGTGACGGGTCGGAACGTTATTCTTGAGATAGTCTTTTCGACATACAGTACCGCCCTTTAAAATATACAAGAATGGAGTTTTCAGTTTATTTTTGAACATTTTGACCATTTTGTCAAGTTTCCGATTACTTTGAAAATTGAAGAAGGTATACAACAGACCTAGATTAAAAATTTTGCATTCACAGAATTTTTAAAAAATTCGTAATTTTTCAGCTATTTGCCGATTTCTGAAAGAACCTTTTTTCACATTTTCAGTACAAAAACTGGTCAAAATGGGACATCTTTCAGAAATCGGCAATCATCTGGAAACTAGAAATTTTCAAAATATTTTTTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACATCCTCCGAAATTCGCAAAATGATCGGAAACTTGACGGCCGAGCTGCAGACTTCAGAAAAATGGTCAAAATGGCAAAAAAACTACCTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATAACGGTCAGACATTTTCATA</pcr_primer_p1>
		<pcr_primer_p2>TGTCGAAAAGACTATCTCAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AATAACGGTCAGACATTTTCATATGCTTTTGACTCTGAATAATATTTTTGTGATGCTTCTTTTTTGAAAATACGGAGGAGAGTTGCTAGGTGCTTCGTTCTTTATTGGCTCAAGAGGAGAATATGTTTCGAAACAGTGAAGACCCAAAGATTTTTGGAGAGCTAGTTGTTAAAATTGATTTTGTAGTTAGAATTCATACATGTGACGGGTCGGAACGTTATTCTTGAGATAGTCTTTTCGACA</canonical_amplicon>
		<polymorphic_amplicon>AATAACGGTCAGACATTTTCATATGCTTTTGACTCTGAATAATATTTTTGTGATGCTTCTTTTTTGAAAATACGGAGGAGAGTTGCTAGGTGCTTCGTTCTTTATTGGCTCAAGAGGAGAATATGTTTCGAAACAGTGAAGACCCAAAGATTTTTGSAGAGCTAGTTGTTAAAATTGATTTTGTAGTTAGAATTCATACATGTGACGGGTCGGAACGTTATTCTTGAGATAGTCTTTTCGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39265</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>314386</contig_pos>
        <strand>+</strand>
        <context>GGTCGGAACG[G/T]TATTCTTGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTAAAATTGATTTTGTAGTTAGAATTCATACATGTGACGGGTCGGAACG</left_flank>
        <right_flank>TATTCTTGAGATAGTCTTTTCGACATACAGTACCGCCCTTTAAAATATAC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTACGGTAAGCAAGTTTTTTTTGTCTGAATAACGCATTTCTCTTTACCTGAATCATTTTCTAGGGACGTAACGGGCGGTGGTGTCCGAGTACAGACTGCCAAAGAACTCATGATGTCGCACATTGCATCACAACGTAATTCGCAGTCTGGTGAGTTTTATTATCATTCGCAGCTGCTTTTATGATCGTTTTCCTATTTCTTTTCCAGGATCCTCTTCCCACTTGTCATCAGCGAACACATCTGGACGAATGAAGTGGGGAGATATGCCGCAGTCATCCAACAATAACGGTCAGACATTTTCATATGCTTTTGACTCTGAATAATATTTTTGTGATGCTTCTTTTTTGAAAATACGGAGGAGAGTTGCTAGGTGCTTCGTTCTTTATTGGCTCAAGAGGAGAATATGTTTCGAAACAGTGAAGACCCAAAGATTTTTGGAGAGCTAGTTGTTAAAATTGATTTTGTAGTTAGAATTCATACATGTGACGGGTCGGAACGTTATTCTTGAGATAGTCTTTTCGACATACAGTACCGCCCTTTAAAATATACAAGAATGGAGTTTTCAGTTTATTTTTGAACATTTTGACCATTTTGTCAAGTTTCCGATTACTTTGAAAATTGAAGAAGGTATACAACAGACCTAGATTAAAAATTTTGCATTCACAGAATTTTTAAAAAATTCGTAATTTTTCAGCTATTTGCCGATTTCTGAAAGAACCTTTTTTCACATTTTCAGTACAAAAACTGGTCAAAATGGGACATCTTTCAGAAATCGGCAATCATCTGGAAACTAGAAATTTTCAAAATATTTTTTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACATCCTCCGAAATTCGCAAAATGATCGGAAACTTGACGGCCGAGCTGCAGACTTCAGAAAAATGGTCAAAATGGCAAAAAAACTACCTGAAATCTATGTTTTTGTACATCTTAATGATTGGTACTGTATGTATTGCCGAGTACTTTTCTGTGA</canonical>
            <polymorphic>TTTACGGTAAGCAAGTTTTTTTTGTCTGAATAACGCATTTCTCTTTACCTGAATCATTTTCTAGGGACGTAACGGGCGGTGGTGTCCGAGTACAGACTGCCAAAGAACTCATGATGTCGCACATTGCATCACAACGTAATTCGCAGTCTGGTGAGTTTTATTATCATTCGCAGCTGCTTTTATGATCGTTTTCCTATTTCTTTTCCAGGATCCTCTTCCCACTTGTCATCAGCGAACACATCTGGACGAATGAAGTGGGGAGATATGCCGCAGTCATCCAACAATAACGGTCAGACATTTTCATATGCTTTTGACTCTGAATAATATTTTTGTGATGCTTCTTTTTTGAAAATACGGAGGAGAGTTGCTAGGTGCTTCGTTCTTTATTGGCTCAAGAGGAGAATATGTTTCGAAACAGTGAAGACCCAAAGATTTTTGGAGAGCTAGTTGTTAAAATTGATTTTGTAGTTAGAATTCATACATGTGACGGGTCGGAACGKTATTCTTGAGATAGTCTTTTCGACATACAGTACCGCCCTTTAAAATATACAAGAATGGAGTTTTCAGTTTATTTTTGAACATTTTGACCATTTTGTCAAGTTTCCGATTACTTTGAAAATTGAAGAAGGTATACAACAGACCTAGATTAAAAATTTTGCATTCACAGAATTTTTAAAAAATTCGTAATTTTTCAGCTATTTGCCGATTTCTGAAAGAACCTTTTTTCACATTTTCAGTACAAAAACTGGTCAAAATGGGACATCTTTCAGAAATCGGCAATCATCTGGAAACTAGAAATTTTCAAAATATTTTTTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACATCCTCCGAAATTCGCAAAATGATCGGAAACTTGACGGCCGAGCTGCAGACTTCAGAAAAATGGTCAAAATGGCAAAAAAACTACCTGAAATCTATGTTTTTGTACATCTTAATGATTGGTACTGTATGTATTGCCGAGTACTTTTCTGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AACGTT</site>
                <isoschizomers>
                    <enzyme>AclI</enzyme>
                    <enzyme>Psp1406I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>503 363 67 67</canonical_bands>
                <polymorphic_bands>866 67 67</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTAGTTGTTAAAATTGATTTTGTAG</pcr_primer_p1>
		<pcr_primer_p2>GAAAAGTACTCGGCAATACATAC</pcr_primer_p2>
		<pcr_amplicon_size>553</pcr_amplicon_size>
		<canonical_amplicon>GCTAGTTGTTAAAATTGATTTTGTAGTTAGAATTCATACATGTGACGGGTCGGAACGTTATTCTTGAGATAGTCTTTTCGACATACAGTACCGCCCTTTAAAATATACAAGAATGGAGTTTTCAGTTTATTTTTGAACATTTTGACCATTTTGTCAAGTTTCCGATTACTTTGAAAATTGAAGAAGGTATACAACAGACCTAGATTAAAAATTTTGCATTCACAGAATTTTTAAAAAATTCGTAATTTTTCAGCTATTTGCCGATTTCTGAAAGAACCTTTTTTCACATTTTCAGTACAAAAACTGGTCAAAATGGGACATCTTTCAGAAATCGGCAATCATCTGGAAACTAGAAATTTTCAAAATATTTTTTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACATCCTCCGAAATTCGCAAAATGATCGGAAACTTGACGGCCGAGCTGCAGACTTCAGAAAAATGGTCAAAATGGCAAAAAAACTACCTGAAATCTATGTTTTTGTACATCTTAATGATTGGTACTGTATGTATTGCCGAGTACTTTTC</canonical_amplicon>
		<polymorphic_amplicon>GCTAGTTGTTAAAATTGATTTTGTAGTTAGAATTCATACATGTGACGGGTCGGAACGKTATTCTTGAGATAGTCTTTTCGACATACAGTACCGCCCTTTAAAATATACAAGAATGGAGTTTTCAGTTTATTTTTGAACATTTTGACCATTTTGTCAAGTTTCCGATTACTTTGAAAATTGAAGAAGGTATACAACAGACCTAGATTAAAAATTTTGCATTCACAGAATTTTTAAAAAATTCGTAATTTTTCAGCTATTTGCCGATTTCTGAAAGAACCTTTTTTCACATTTTCAGTACAAAAACTGGTCAAAATGGGACATCTTTCAGAAATCGGCAATCATCTGGAAACTAGAAATTTTCAAAATATTTTTTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACATCCTCCGAAATTCGCAAAATGATCGGAAACTTGACGGCCGAGCTGCAGACTTCAGAAAAATGGTCAAAATGGCAAAAAAACTACCTGAAATCTATGTTTTTGTACATCTTAATGATTGGTACTGTATGTATTGCCGAGTACTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39266</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>314481</contig_pos>
        <strand></strand>
        <context>tgaccatttt[G/T]tcaagtttcc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATATACAAGAATGGAGTTTTCAGTTTATTTTTGAACATTTTGACCATTTT</left_flank>
        <right_flank>TCAAGTTTCCGATTACTTTGAAAATTGAAGAAGGTATACAACAGACCTAG</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTGCCAAAGAACTCATGATGTCGCACATTGCATCACAACGTAATTCGCAGTCTGGTGAGTTTTATTATCATTCGCAGCTGCTTTTATGATCGTTTTCCTATTTCTTTTCCAGGATCCTCTTCCCACTTGTCATCAGCGAACACATCTGGACGAATGAAGTGGGGAGATATGCCGCAGTCATCCAACAATAACGGTCAGACATTTTCATATGCTTTTGACTCTGAATAATATTTTTGTGATGCTTCTTTTTTGAAAATACGGAGGAGAGTTGCTAGGTGCTTCGTTCTTTATTGGCTCAAGAGGAGAATATGTTTCGAAACAGTGAAGACCCAAAGATTTTTGGAGAGCTAGTTGTTAAAATTGATTTTGTAGTTAGAATTCATACATGTGACGGGTCGGAACGTTATTCTTGAGATAGTCTTTTCGACATACAGTACCGCCCTTTAAAATATACAAGAATGGAGTTTTCAGTTTATTTTTGAACATTTTGACCATTTTGTCAAGTTTCCGATTACTTTGAAAATTGAAGAAGGTATACAACAGACCTAGATTAAAAATTTTGCATTCACAGAATTTTTAAAAAATTCGTAATTTTTCAGCTATTTGCCGATTTCTGAAAGAACCTTTTTTCACATTTTCAGTACAAAAACTGGTCAAAATGGGACATCTTTCAGAAATCGGCAATCATCTGGAAACTAGAAATTTTCAAAATATTTTTTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACATCCTCCGAAATTCGCAAAATGATCGGAAACTTGACGGCCGAGCTGCAGACTTCAGAAAAATGGTCAAAATGGCAAAAAAACTACCTGAAATCTATGTTTTTGTACATCTTAATGATTGGTACTGTATGTATTGCCGAGTACTTTTCTGTGACTAGTCAGATTGGCTCTATTCAATTCCGTTCCTATCTTTATGAAATTTTATGGCAACACAACCCCAACCACCCTCATCCGGTGGCCACAGCTTTC</canonical>
            <polymorphic>ACTGCCAAAGAACTCATGATGTCGCACATTGCATCACAACGTAATTCGCAGTCTGGTGAGTTTTATTATCATTCGCAGCTGCTTTTATGATCGTTTTCCTATTTCTTTTCCAGGATCCTCTTCCCACTTGTCATCAGCGAACACATCTGGACGAATGAAGTGGGGAGATATGCCGCAGTCATCCAACAATAACGGTCAGACATTTTCATATGCTTTTGACTCTGAATAATATTTTTGTGATGCTTCTTTTTTGAAAATACGGAGGAGAGTTGCTAGGTGCTTCGTTCTTTATTGGCTCAAGAGGAGAATATGTTTCGAAACAGTGAAGACCCAAAGATTTTTGGAGAGCTAGTTGTTAAAATTGATTTTGTAGTTAGAATTCATACATGTGACGGGTCGGAACGTTATTCTTGAGATAGTCTTTTCGACATACAGTACCGCCCTTTAAAATATACAAGAATGGAGTTTTCAGTTTATTTTTGAACATTTTGACCATTTTKTCAAGTTTCCGATTACTTTGAAAATTGAAGAAGGTATACAACAGACCTAGATTAAAAATTTTGCATTCACAGAATTTTTAAAAAATTCGTAATTTTTCAGCTATTTGCCGATTTCTGAAAGAACCTTTTTTCACATTTTCAGTACAAAAACTGGTCAAAATGGGACATCTTTCAGAAATCGGCAATCATCTGGAAACTAGAAATTTTCAAAATATTTTTTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACATCCTCCGAAATTCGCAAAATGATCGGAAACTTGACGGCCGAGCTGCAGACTTCAGAAAAATGGTCAAAATGGCAAAAAAACTACCTGAAATCTATGTTTTTGTACATCTTAATGATTGGTACTGTATGTATTGCCGAGTACTTTTCTGTGACTAGTCAGATTGGCTCTATTCAATTCCGTTCCTATCTTTATGAAATTTTATGGCAACACAACCCCAACCACCCTCATCCGGTGGCCACAGCTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GACNNNNNNGTC</site>
                <isoschizomers>
                    <enzyme>AasI</enzyme>
                    <enzyme>DrdI</enzyme>
                    <enzyme>DseDI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTGAGATAGTCTTTTCGACAT</pcr_primer_p1>
		<pcr_primer_p2>GAAAAGTACTCGGCAATACATAC</pcr_primer_p2>
		<pcr_amplicon_size>492</pcr_amplicon_size>
		<canonical_amplicon>TCTTGAGATAGTCTTTTCGACATACAGTACCGCCCTTTAAAATATACAAGAATGGAGTTTTCAGTTTATTTTTGAACATTTTGACCATTTTGTCAAGTTTCCGATTACTTTGAAAATTGAAGAAGGTATACAACAGACCTAGATTAAAAATTTTGCATTCACAGAATTTTTAAAAAATTCGTAATTTTTCAGCTATTTGCCGATTTCTGAAAGAACCTTTTTTCACATTTTCAGTACAAAAACTGGTCAAAATGGGACATCTTTCAGAAATCGGCAATCATCTGGAAACTAGAAATTTTCAAAATATTTTTTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACATCCTCCGAAATTCGCAAAATGATCGGAAACTTGACGGCCGAGCTGCAGACTTCAGAAAAATGGTCAAAATGGCAAAAAAACTACCTGAAATCTATGTTTTTGTACATCTTAATGATTGGTACTGTATGTATTGCCGAGTACTTTTC</canonical_amplicon>
		<polymorphic_amplicon>TCTTGAGATAGTCTTTTCGACATACAGTACCGCCCTTTAAAATATACAAGAATGGAGTTTTCAGTTTATTTTTGAACATTTTGACCATTTTKTCAAGTTTCCGATTACTTTGAAAATTGAAGAAGGTATACAACAGACCTAGATTAAAAATTTTGCATTCACAGAATTTTTAAAAAATTCGTAATTTTTCAGCTATTTGCCGATTTCTGAAAGAACCTTTTTTCACATTTTCAGTACAAAAACTGGTCAAAATGGGACATCTTTCAGAAATCGGCAATCATCTGGAAACTAGAAATTTTCAAAATATTTTTTGAATGCAAAGTTTTCAATCTAGGTCTGTTTTACATCCTCCGAAATTCGCAAAATGATCGGAAACTTGACGGCCGAGCTGCAGACTTCAGAAAAATGGTCAAAATGGCAAAAAAACTACCTGAAATCTATGTTTTTGTACATCTTAATGATTGGTACTGTATGTATTGCCGAGTACTTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39267</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>315856</contig_pos>
        <strand></strand>
        <context>ccacagaatg[A/G]aagagcgtct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATATATCCTAACAAGAGAACCTTTTAAGTTGTGATTAGTCCACAGAATG</left_flank>
        <right_flank>AAGAGCGTCTTTCAAACCACCTAAAACCATATTCAAAATCTTCTTAAGAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTCCGATTTCGGAAATGAAGGCAAATCGAATGCTTCCTCCATCCATCCTTCGTCTTCTTCTTATTCTTGGCCTTCGTGTGTGTTTCTTTCTCTTTCCTTATACAAACTTTTCTCACCTCTCCAAATTCTTGATGTATTCCATTTTTCTGCGCTTCCTCCTCCCAATTCTTTTTTCTCACATTTCGCGCATCCATCAAACATCCCAACCCTGCCCTTCTTCAGTTTCACATGAATAACGAATTAATTGTGTTGCTTTTTTTCAGACTGGCATCCATCCTCAACTGTAGATATTCATCGCGTTTCACCAGTCATGGCCACTTCAATGGCTCCGCCCCATCACCAGCAACAATATGGAGGATATCCTAGAGATCATGGTGAATTTTTTTTTCTCTCATCTCTGGCTAGTTTTAAAAAAATTACCATCACCTGCCAGCCAGGTGTCTTTAAGATATATCCTAACAAGAGAACCTTTTAAGTTGTGATTAGTCCACAGAATGAAAGAGCGTCTTTCAAACCACCTAAAACCATATTCAAAATCTTCTTAAGAAGTCTTTGAAGTACTGGAATTTCCGTTTCAGTACCAGAAAATCACGTTTTCTGTGTAAAATCGGCAATTTTCAAATGTGATTTTCTCCAATCCTATGAGGTTTTTAAACTTGAATCATTTTGGGTTATACTTGAAATTATATGGAATTTCATATTTCGAAATTTTTCTTGAAAAATTTTAAGTTCTGACAATGAAACCTACCATAAGTGGAGAAAACCACATTTGAAAAATGCCGATTTTACACTGAAAAAAAATTTCTTGGTGCTGAAACTGAAATTCCATCATTTTAGAGGTTTCTTGAGCAGCTTTTAAAAACGGTTTCAAAAGTTTTGAAATACGCTCTTTCATTCTGTATACTTGGTTTGGACAAATCAGCCGGACAACTTGAAAGGTTCCCTCGTAAGAAATAGATTACTTTCTCTCTAGTTTTTTTTCGAACTCATTTAAAAAA</canonical>
            <polymorphic>GTGTCCGATTTCGGAAATGAAGGCAAATCGAATGCTTCCTCCATCCATCCTTCGTCTTCTTCTTATTCTTGGCCTTCGTGTGTGTTTCTTTCTCTTTCCTTATACAAACTTTTCTCACCTCTCCAAATTCTTGATGTATTCCATTTTTCTGCGCTTCCTCCTCCCAATTCTTTTTTCTCACATTTCGCGCATCCATCAAACATCCCAACCCTGCCCTTCTTCAGTTTCACATGAATAACGAATTAATTGTGTTGCTTTTTTTCAGACTGGCATCCATCCTCAACTGTAGATATTCATCGCGTTTCACCAGTCATGGCCACTTCAATGGCTCCGCCCCATCACCAGCAACAATATGGAGGATATCCTAGAGATCATGGTGAATTTTTTTTTCTCTCATCTCTGGCTAGTTTTAAAAAAATTACCATCACCTGCCAGCCAGGTGTCTTTAAGATATATCCTAACAAGAGAACCTTTTAAGTTGTGATTAGTCCACAGAATGRAAGAGCGTCTTTCAAACCACCTAAAACCATATTCAAAATCTTCTTAAGAAGTCTTTGAAGTACTGGAATTTCCGTTTCAGTACCAGAAAATCACGTTTTCTGTGTAAAATCGGCAATTTTCAAATGTGATTTTCTCCAATCCTATGAGGTTTTTAAACTTGAATCATTTTGGGTTATACTTGAAATTATATGGAATTTCATATTTCGAAATTTTTCTTGAAAAATTTTAAGTTCTGACAATGAAACCTACCATAAGTGGAGAAAACCACATTTGAAAAATGCCGATTTTACACTGAAAAAAAATTTCTTGGTGCTGAAACTGAAATTCCATCATTTTAGAGGTTTCTTGAGCAGCTTTTAAAAACGGTTTCAAAAGTTTTGAAATACGCTCTTTCATTCTGTATACTTGGTTTGGACAAATCAGCCGGACAACTTGAAAGGTTCCCTCGTAAGAAATAGATTACTTTCTCTCTAGTTTTTTTTCGAACTCATTTAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCTCATCTCTGGCTAGTTTTA</pcr_primer_p1>
		<pcr_primer_p2>AACTCTTGATGTAGTACGAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>689</pcr_amplicon_size>
		<canonical_amplicon>TCTCTCATCTCTGGCTAGTTTTAAAAAAATTACCATCACCTGCCAGCCAGGTGTCTTTAAGATATATCCTAACAAGAGAACCTTTTAAGTTGTGATTAGTCCACAGAATGAAAGAGCGTCTTTCAAACCACCT</canonical_amplicon>
		<polymorphic_amplicon>TCTCTCATCTCTGGCTAGTTTTAAAAAAATTACCATCACCTGCCAGCCAGGTGTCTTTAAGATATATCCTAACAAGAGAACCTTTTAAGTTGTGATTAGTCCACAGAATGRAAGAGCGTCTTTCAAACCACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39268</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>315885</contig_pos>
        <strand></strand>
        <context>acctaaaacc[A/G]tattcaaaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGTGATTAGTCCACAGAATGAAAGAGCGTCTTTCAAACCACCTAAAACC</left_flank>
        <right_flank>TATTCAAAATCTTCTTAAGAAGTCTTTGAAGTACTGGAATTTCCGTTTCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATGCTTCCTCCATCCATCCTTCGTCTTCTTCTTATTCTTGGCCTTCGTGTGTGTTTCTTTCTCTTTCCTTATACAAACTTTTCTCACCTCTCCAAATTCTTGATGTATTCCATTTTTCTGCGCTTCCTCCTCCCAATTCTTTTTTCTCACATTTCGCGCATCCATCAAACATCCCAACCCTGCCCTTCTTCAGTTTCACATGAATAACGAATTAATTGTGTTGCTTTTTTTCAGACTGGCATCCATCCTCAACTGTAGATATTCATCGCGTTTCACCAGTCATGGCCACTTCAATGGCTCCGCCCCATCACCAGCAACAATATGGAGGATATCCTAGAGATCATGGTGAATTTTTTTTTCTCTCATCTCTGGCTAGTTTTAAAAAAATTACCATCACCTGCCAGCCAGGTGTCTTTAAGATATATCCTAACAAGAGAACCTTTTAAGTTGTGATTAGTCCACAGAATGAAAGAGCGTCTTTCAAACCACCTAAAACCATATTCAAAATCTTCTTAAGAAGTCTTTGAAGTACTGGAATTTCCGTTTCAGTACCAGAAAATCACGTTTTCTGTGTAAAATCGGCAATTTTCAAATGTGATTTTCTCCAATCCTATGAGGTTTTTAAACTTGAATCATTTTGGGTTATACTTGAAATTATATGGAATTTCATATTTCGAAATTTTTCTTGAAAAATTTTAAGTTCTGACAATGAAACCTACCATAAGTGGAGAAAACCACATTTGAAAAATGCCGATTTTACACTGAAAAAAAATTTCTTGGTGCTGAAACTGAAATTCCATCATTTTAGAGGTTTCTTGAGCAGCTTTTAAAAACGGTTTCAAAAGTTTTGAAATACGCTCTTTCATTCTGTATACTTGGTTTGGACAAATCAGCCGGACAACTTGAAAGGTTCCCTCGTAAGAAATAGATTACTTTCTCTCTAGTTTTTTTTCGAACTCATTTAAAAAACCATTTTTAGGACCCTCCTACCCAATGCC</canonical>
            <polymorphic>GAATGCTTCCTCCATCCATCCTTCGTCTTCTTCTTATTCTTGGCCTTCGTGTGTGTTTCTTTCTCTTTCCTTATACAAACTTTTCTCACCTCTCCAAATTCTTGATGTATTCCATTTTTCTGCGCTTCCTCCTCCCAATTCTTTTTTCTCACATTTCGCGCATCCATCAAACATCCCAACCCTGCCCTTCTTCAGTTTCACATGAATAACGAATTAATTGTGTTGCTTTTTTTCAGACTGGCATCCATCCTCAACTGTAGATATTCATCGCGTTTCACCAGTCATGGCCACTTCAATGGCTCCGCCCCATCACCAGCAACAATATGGAGGATATCCTAGAGATCATGGTGAATTTTTTTTTCTCTCATCTCTGGCTAGTTTTAAAAAAATTACCATCACCTGCCAGCCAGGTGTCTTTAAGATATATCCTAACAAGAGAACCTTTTAAGTTGTGATTAGTCCACAGAATGAAAGAGCGTCTTTCAAACCACCTAAAACCRTATTCAAAATCTTCTTAAGAAGTCTTTGAAGTACTGGAATTTCCGTTTCAGTACCAGAAAATCACGTTTTCTGTGTAAAATCGGCAATTTTCAAATGTGATTTTCTCCAATCCTATGAGGTTTTTAAACTTGAATCATTTTGGGTTATACTTGAAATTATATGGAATTTCATATTTCGAAATTTTTCTTGAAAAATTTTAAGTTCTGACAATGAAACCTACCATAAGTGGAGAAAACCACATTTGAAAAATGCCGATTTTACACTGAAAAAAAATTTCTTGGTGCTGAAACTGAAATTCCATCATTTTAGAGGTTTCTTGAGCAGCTTTTAAAAACGGTTTCAAAAGTTTTGAAATACGCTCTTTCATTCTGTATACTTGGTTTGGACAAATCAGCCGGACAACTTGAAAGGTTCCCTCGTAAGAAATAGATTACTTTCTCTCTAGTTTTTTTTCGAACTCATTTAAAAAACCATTTTTAGGACCCTCCTACCCAATGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCTCATCTCTGGCTAGTTTTA</pcr_primer_p1>
		<pcr_primer_p2>AACTCTTGATGTAGTACGAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>689</pcr_amplicon_size>
		<canonical_amplicon>TCTCTCATCTCTGGCTAGTTTTAAAAAAATTACCATCACCTGCCAGCCAGGTGTCTTTAAGATATATCCTAACAAGAGAACCTTTTAAGTTGTGATTAGTCCACAGAATGAAAGAGCGTCTTTCAAACCACCTAAAACCATATTCAAAATCTTCTTAAGAAG</canonical_amplicon>
		<polymorphic_amplicon>TCTCTCATCTCTGGCTAGTTTTAAAAAAATTACCATCACCTGCCAGCCAGGTGTCTTTAAGATATATCCTAACAAGAGAACCTTTTAAGTTGTGATTAGTCCACAGAATGAAAGAGCGTCTTTCAAACCACCTAAAACCRTATTCAAAATCTTCTTAAGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39269</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>315899</contig_pos>
        <strand></strand>
        <context>tcaaaatctt[C/T]ttaagaagtc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGAATGAAAGAGCGTCTTTCAAACCACCTAAAACCATATTCAAAATCTT</left_flank>
        <right_flank>TTAAGAAGTCTTTGAAGTACTGGAATTTCCGTTTCAGTACCAGAAAATCA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCATCCTTCGTCTTCTTCTTATTCTTGGCCTTCGTGTGTGTTTCTTTCTCTTTCCTTATACAAACTTTTCTCACCTCTCCAAATTCTTGATGTATTCCATTTTTCTGCGCTTCCTCCTCCCAATTCTTTTTTCTCACATTTCGCGCATCCATCAAACATCCCAACCCTGCCCTTCTTCAGTTTCACATGAATAACGAATTAATTGTGTTGCTTTTTTTCAGACTGGCATCCATCCTCAACTGTAGATATTCATCGCGTTTCACCAGTCATGGCCACTTCAATGGCTCCGCCCCATCACCAGCAACAATATGGAGGATATCCTAGAGATCATGGTGAATTTTTTTTTCTCTCATCTCTGGCTAGTTTTAAAAAAATTACCATCACCTGCCAGCCAGGTGTCTTTAAGATATATCCTAACAAGAGAACCTTTTAAGTTGTGATTAGTCCACAGAATGAAAGAGCGTCTTTCAAACCACCTAAAACCATATTCAAAATCTTCTTAAGAAGTCTTTGAAGTACTGGAATTTCCGTTTCAGTACCAGAAAATCACGTTTTCTGTGTAAAATCGGCAATTTTCAAATGTGATTTTCTCCAATCCTATGAGGTTTTTAAACTTGAATCATTTTGGGTTATACTTGAAATTATATGGAATTTCATATTTCGAAATTTTTCTTGAAAAATTTTAAGTTCTGACAATGAAACCTACCATAAGTGGAGAAAACCACATTTGAAAAATGCCGATTTTACACTGAAAAAAAATTTCTTGGTGCTGAAACTGAAATTCCATCATTTTAGAGGTTTCTTGAGCAGCTTTTAAAAACGGTTTCAAAAGTTTTGAAATACGCTCTTTCATTCTGTATACTTGGTTTGGACAAATCAGCCGGACAACTTGAAAGGTTCCCTCGTAAGAAATAGATTACTTTCTCTCTAGTTTTTTTTCGAACTCATTTAAAAAACCATTTTTAGGACCCTCCTACCCAATGCCAGACTCCACCCATC</canonical>
            <polymorphic>TCCATCCTTCGTCTTCTTCTTATTCTTGGCCTTCGTGTGTGTTTCTTTCTCTTTCCTTATACAAACTTTTCTCACCTCTCCAAATTCTTGATGTATTCCATTTTTCTGCGCTTCCTCCTCCCAATTCTTTTTTCTCACATTTCGCGCATCCATCAAACATCCCAACCCTGCCCTTCTTCAGTTTCACATGAATAACGAATTAATTGTGTTGCTTTTTTTCAGACTGGCATCCATCCTCAACTGTAGATATTCATCGCGTTTCACCAGTCATGGCCACTTCAATGGCTCCGCCCCATCACCAGCAACAATATGGAGGATATCCTAGAGATCATGGTGAATTTTTTTTTCTCTCATCTCTGGCTAGTTTTAAAAAAATTACCATCACCTGCCAGCCAGGTGTCTTTAAGATATATCCTAACAAGAGAACCTTTTAAGTTGTGATTAGTCCACAGAATGAAAGAGCGTCTTTCAAACCACCTAAAACCATATTCAAAATCTTYTTAAGAAGTCTTTGAAGTACTGGAATTTCCGTTTCAGTACCAGAAAATCACGTTTTCTGTGTAAAATCGGCAATTTTCAAATGTGATTTTCTCCAATCCTATGAGGTTTTTAAACTTGAATCATTTTGGGTTATACTTGAAATTATATGGAATTTCATATTTCGAAATTTTTCTTGAAAAATTTTAAGTTCTGACAATGAAACCTACCATAAGTGGAGAAAACCACATTTGAAAAATGCCGATTTTACACTGAAAAAAAATTTCTTGGTGCTGAAACTGAAATTCCATCATTTTAGAGGTTTCTTGAGCAGCTTTTAAAAACGGTTTCAAAAGTTTTGAAATACGCTCTTTCATTCTGTATACTTGGTTTGGACAAATCAGCCGGACAACTTGAAAGGTTCCCTCGTAAGAAATAGATTACTTTCTCTCTAGTTTTTTTTCGAACTCATTTAAAAAACCATTTTTAGGACCCTCCTACCCAATGCCAGACTCCACCCATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTTAAG</site>
                <isoschizomers>
                    <enzyme>AflII</enzyme>
                    <enzyme>BfrI</enzyme>
                    <enzyme>BspTI</enzyme>
                    <enzyme>Bst98I</enzyme>
                    <enzyme>MspCI</enzyme>
                    <enzyme>Vha464I</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>500 303 197</canonical_bands>
                <polymorphic_bands>803 197</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCTCATCTCTGGCTAGTTTTA</pcr_primer_p1>
		<pcr_primer_p2>AACTCTTGATGTAGTACGAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>689</pcr_amplicon_size>
		<canonical_amplicon>TCTCTCATCTCTGGCTAGTTTTAAAAAAATTACCATCACCTGCCAGCCAGGTGTCTTTAAGATATATCCTAACAAGAGAACCTTTTAAGTTGTGATTAGTCCACAGAATGAAAGAGCGTCTTTCAAACCACCTAAAACCATATTCAAAATCTTCTTAAGAAGTCTTTGAAGTACTG</canonical_amplicon>
		<polymorphic_amplicon>TCTCTCATCTCTGGCTAGTTTTAAAAAAATTACCATCACCTGCCAGCCAGGTGTCTTTAAGATATATCCTAACAAGAGAACCTTTTAAGTTGTGATTAGTCCACAGAATGAAAGAGCGTCTTTCAAACCACCTAAAACCATATTCAAAATCTTYTTAAGAAGTCTTTGAAGTACTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39270</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>315993</contig_pos>
        <strand></strand>
        <context>tgattttctc[C/T]aatcctatga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATCACGTTTTCTGTGTAAAATCGGCAATTTTCAAATGTGATTTTCTC</left_flank>
        <right_flank>AATCCTATGAGGTTTTTAAACTTGAATCATTTTGGGTTATACTTGAAATT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTCCATTTTTCTGCGCTTCCTCCTCCCAATTCTTTTTTCTCACATTTCGCGCATCCATCAAACATCCCAACCCTGCCCTTCTTCAGTTTCACATGAATAACGAATTAATTGTGTTGCTTTTTTTCAGACTGGCATCCATCCTCAACTGTAGATATTCATCGCGTTTCACCAGTCATGGCCACTTCAATGGCTCCGCCCCATCACCAGCAACAATATGGAGGATATCCTAGAGATCATGGTGAATTTTTTTTTCTCTCATCTCTGGCTAGTTTTAAAAAAATTACCATCACCTGCCAGCCAGGTGTCTTTAAGATATATCCTAACAAGAGAACCTTTTAAGTTGTGATTAGTCCACAGAATGAAAGAGCGTCTTTCAAACCACCTAAAACCATATTCAAAATCTTCTTAAGAAGTCTTTGAAGTACTGGAATTTCCGTTTCAGTACCAGAAAATCACGTTTTCTGTGTAAAATCGGCAATTTTCAAATGTGATTTTCTCCAATCCTATGAGGTTTTTAAACTTGAATCATTTTGGGTTATACTTGAAATTATATGGAATTTCATATTTCGAAATTTTTCTTGAAAAATTTTAAGTTCTGACAATGAAACCTACCATAAGTGGAGAAAACCACATTTGAAAAATGCCGATTTTACACTGAAAAAAAATTTCTTGGTGCTGAAACTGAAATTCCATCATTTTAGAGGTTTCTTGAGCAGCTTTTAAAAACGGTTTCAAAAGTTTTGAAATACGCTCTTTCATTCTGTATACTTGGTTTGGACAAATCAGCCGGACAACTTGAAAGGTTCCCTCGTAAGAAATAGATTACTTTCTCTCTAGTTTTTTTTCGAACTCATTTAAAAAACCATTTTTAGGACCCTCCTACCCAATGCCAGACTCCACCCATCCCCCACCATTGGCTCCTCGTACTACATCAAGAGTTTTAACAGCTGCTCCATCCCAACAAGCACTCCAACAAATCCAAGCAAGTTCTCCATTCCG</canonical>
            <polymorphic>ATTCCATTTTTCTGCGCTTCCTCCTCCCAATTCTTTTTTCTCACATTTCGCGCATCCATCAAACATCCCAACCCTGCCCTTCTTCAGTTTCACATGAATAACGAATTAATTGTGTTGCTTTTTTTCAGACTGGCATCCATCCTCAACTGTAGATATTCATCGCGTTTCACCAGTCATGGCCACTTCAATGGCTCCGCCCCATCACCAGCAACAATATGGAGGATATCCTAGAGATCATGGTGAATTTTTTTTTCTCTCATCTCTGGCTAGTTTTAAAAAAATTACCATCACCTGCCAGCCAGGTGTCTTTAAGATATATCCTAACAAGAGAACCTTTTAAGTTGTGATTAGTCCACAGAATGAAAGAGCGTCTTTCAAACCACCTAAAACCATATTCAAAATCTTCTTAAGAAGTCTTTGAAGTACTGGAATTTCCGTTTCAGTACCAGAAAATCACGTTTTCTGTGTAAAATCGGCAATTTTCAAATGTGATTTTCTCYAATCCTATGAGGTTTTTAAACTTGAATCATTTTGGGTTATACTTGAAATTATATGGAATTTCATATTTCGAAATTTTTCTTGAAAAATTTTAAGTTCTGACAATGAAACCTACCATAAGTGGAGAAAACCACATTTGAAAAATGCCGATTTTACACTGAAAAAAAATTTCTTGGTGCTGAAACTGAAATTCCATCATTTTAGAGGTTTCTTGAGCAGCTTTTAAAAACGGTTTCAAAAGTTTTGAAATACGCTCTTTCATTCTGTATACTTGGTTTGGACAAATCAGCCGGACAACTTGAAAGGTTCCCTCGTAAGAAATAGATTACTTTCTCTCTAGTTTTTTTTCGAACTCATTTAAAAAACCATTTTTAGGACCCTCCTACCCAATGCCAGACTCCACCCATCCCCCACCATTGGCTCCTCGTACTACATCAAGAGTTTTAACAGCTGCTCCATCCCAACAAGCACTCCAACAAATCCAAGCAAGTTCTCCATTCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCTCATCTCTGGCTAGTTTTA</pcr_primer_p1>
		<pcr_primer_p2>AACTCTTGATGTAGTACGAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>689</pcr_amplicon_size>
		<canonical_amplicon>TCTCTCATCTCTGGCTAGTTTTAAAAAAATTACCATCACCTGCCAGCCAGGTGTCTTTAAGATATATCCTAACAAGAGAACCTTTTAAGTTGTGATTAGTCCACAGAATGAAAGAGCGTCTTTCAAACCACCTAAAACCATATTCAAAATCTTCTTAAGAAGTCTTTGAAGTACTGGAATTTCCGTTTCAGTACCAGAAAATCACGTTTTCTGTGTAAAATCGGCAATTTTCAAATGTGATTTTCTCCAATCCTATGAGGTTTTTAAACTTGAATCATTTTGGGTTATACTTGAAATTATATGGAATTTCATATTTCGAAATTTTTCTTGAAAAATTTTAAGTTCTGACAATGAAACCTACCATAAGTGGAGAAAACCACATTTGAAAAATGCCGATTTTACACTGAAAAAAAATTTCTTGGTGCTGAAACTGAAATTCCATCATTTTAGAGGTTTCTTGAGCAGCTTTTAAAAACGGTTTCAAAAGTTTTGAAATACGCTCTTTCATTCTGTATACTTGGTTTGGACAAATCAGCCGGACAACTTGAAAGGTTCCCTCGTAAGAAATAGATTACTTTCTCTCTAGTTTTTTTTCGAACTCATTTAAAAAACCATTTTTAGGACCCTCCTACCCAATGCCAGACTCCACCCATCCCCCACCATTGGCTCCTCGTACTACATCAAGAGTT</canonical_amplicon>
		<polymorphic_amplicon>TCTCTCATCTCTGGCTAGTTTTAAAAAAATTACCATCACCTGCCAGCCAGGTGTCTTTAAGATATATCCTAACAAGAGAACCTTTTAAGTTGTGATTAGTCCACAGAATGAAAGAGCGTCTTTCAAACCACCTAAAACCATATTCAAAATCTTCTTAAGAAGTCTTTGAAGTACTGGAATTTCCGTTTCAGTACCAGAAAATCACGTTTTCTGTGTAAAATCGGCAATTTTCAAATGTGATTTTCTCYAATCCTATGAGGTTTTTAAACTTGAATCATTTTGGGTTATACTTGAAATTATATGGAATTTCATATTTCGAAATTTTTCTTGAAAAATTTTAAGTTCTGACAATGAAACCTACCATAAGTGGAGAAAACCACATTTGAAAAATGCCGATTTTACACTGAAAAAAAATTTCTTGGTGCTGAAACTGAAATTCCATCATTTTAGAGGTTTCTTGAGCAGCTTTTAAAAACGGTTTCAAAAGTTTTGAAATACGCTCTTTCATTCTGTATACTTGGTTTGGACAAATCAGCCGGACAACTTGAAAGGTTCCCTCGTAAGAAATAGATTACTTTCTCTCTAGTTTTTTTTCGAACTCATTTAAAAAACCATTTTTAGGACCCTCCTACCCAATGCCAGACTCCACCCATCCCCCACCATTGGCTCCTCGTACTACATCAAGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39271</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>316110</contig_pos>
        <strand></strand>
        <context>aacctaccat[A/G]agtggagaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGAAATTTTTCTTGAAAAATTTTAAGTTCTGACAATGAAACCTACCAT</left_flank>
        <right_flank>AGTGGAGAAAACCACATTTGAAAAATGCCGATTTTACACTGAAAAAAAAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTTTTCAGACTGGCATCCATCCTCAACTGTAGATATTCATCGCGTTTCACCAGTCATGGCCACTTCAATGGCTCCGCCCCATCACCAGCAACAATATGGAGGATATCCTAGAGATCATGGTGAATTTTTTTTTCTCTCATCTCTGGCTAGTTTTAAAAAAATTACCATCACCTGCCAGCCAGGTGTCTTTAAGATATATCCTAACAAGAGAACCTTTTAAGTTGTGATTAGTCCACAGAATGAAAGAGCGTCTTTCAAACCACCTAAAACCATATTCAAAATCTTCTTAAGAAGTCTTTGAAGTACTGGAATTTCCGTTTCAGTACCAGAAAATCACGTTTTCTGTGTAAAATCGGCAATTTTCAAATGTGATTTTCTCCAATCCTATGAGGTTTTTAAACTTGAATCATTTTGGGTTATACTTGAAATTATATGGAATTTCATATTTCGAAATTTTTCTTGAAAAATTTTAAGTTCTGACAATGAAACCTACCATAAGTGGAGAAAACCACATTTGAAAAATGCCGATTTTACACTGAAAAAAAATTTCTTGGTGCTGAAACTGAAATTCCATCATTTTAGAGGTTTCTTGAGCAGCTTTTAAAAACGGTTTCAAAAGTTTTGAAATACGCTCTTTCATTCTGTATACTTGGTTTGGACAAATCAGCCGGACAACTTGAAAGGTTCCCTCGTAAGAAATAGATTACTTTCTCTCTAGTTTTTTTTCGAACTCATTTAAAAAACCATTTTTAGGACCCTCCTACCCAATGCCAGACTCCACCCATCCCCCACCATTGGCTCCTCGTACTACATCAAGAGTTTTAACAGCTGCTCCATCCCAACAAGCACTCCAACAAATCCAAGCAAGTTCTCCATTCCGACGAAAGTCAATGGATCGAAACAGTCTCTCGAAGAAGTTTTTGGAAAACGGAGGAACCCAACCGAAAACTGTGTGGAGCTCATCGGCCCTTGCCACTTCAGGAGCTCCACGACGAAG</canonical>
            <polymorphic>CTTTTTTTCAGACTGGCATCCATCCTCAACTGTAGATATTCATCGCGTTTCACCAGTCATGGCCACTTCAATGGCTCCGCCCCATCACCAGCAACAATATGGAGGATATCCTAGAGATCATGGTGAATTTTTTTTTCTCTCATCTCTGGCTAGTTTTAAAAAAATTACCATCACCTGCCAGCCAGGTGTCTTTAAGATATATCCTAACAAGAGAACCTTTTAAGTTGTGATTAGTCCACAGAATGAAAGAGCGTCTTTCAAACCACCTAAAACCATATTCAAAATCTTCTTAAGAAGTCTTTGAAGTACTGGAATTTCCGTTTCAGTACCAGAAAATCACGTTTTCTGTGTAAAATCGGCAATTTTCAAATGTGATTTTCTCCAATCCTATGAGGTTTTTAAACTTGAATCATTTTGGGTTATACTTGAAATTATATGGAATTTCATATTTCGAAATTTTTCTTGAAAAATTTTAAGTTCTGACAATGAAACCTACCATRAGTGGAGAAAACCACATTTGAAAAATGCCGATTTTACACTGAAAAAAAATTTCTTGGTGCTGAAACTGAAATTCCATCATTTTAGAGGTTTCTTGAGCAGCTTTTAAAAACGGTTTCAAAAGTTTTGAAATACGCTCTTTCATTCTGTATACTTGGTTTGGACAAATCAGCCGGACAACTTGAAAGGTTCCCTCGTAAGAAATAGATTACTTTCTCTCTAGTTTTTTTTCGAACTCATTTAAAAAACCATTTTTAGGACCCTCCTACCCAATGCCAGACTCCACCCATCCCCCACCATTGGCTCCTCGTACTACATCAAGAGTTTTAACAGCTGCTCCATCCCAACAAGCACTCCAACAAATCCAAGCAAGTTCTCCATTCCGACGAAAGTCAATGGATCGAAACAGTCTCTCGAAGAAGTTTTTGGAAAACGGAGGAACCCAACCGAAAACTGTGTGGAGCTCATCGGCCCTTGCCACTTCAGGAGCTCCACGACGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCTCATCTCTGGCTAGTTTTA</pcr_primer_p1>
		<pcr_primer_p2>AACTCTTGATGTAGTACGAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>689</pcr_amplicon_size>
		<canonical_amplicon>TCTCTCATCTCTGGCTAGTTTTAAAAAAATTACCATCACCTGCCAGCCAGGTGTCTTTAAGATATATCCTAACAAGAGAACCTTTTAAGTTGTGATTAGTCCACAGAATGAAAGAGCGTCTTTCAAACCACCTAAAACCATATTCAAAATCTTCTTAAGAAGTCTTTGAAGTACTGGAATTTCCGTTTCAGTACCAGAAAATCACGTTTTCTGTGTAAAATCGGCAATTTTCAAATGTGATTTTCTCCAATCCTATGAGGTTTTTAAACTTGAATCATTTTGGGTTATACTTGAAATTATATGGAATTTCATATTTCGAAATTTTTCTTGAAAAATTTTAAGTTCTGACAATGAAACCTACCATAAGTGGAGAAAACCACATTTGAAAAATGCCGATTTTACACTGAAAAAAAATTTCTTGGTGCTGAAACTGAAATTCCATCATTTTAGAGGTTTCTTGAGCAGCTTTTAAAAACGGTTTCAAAAGTTTTGAAATACGCTCTTTCATTCTGTATACTTGGTTTGGACAAATCAGCCGGACAACTTGAAAGGTTCCCTCGTAAGAAATAGATTACTTTCTCTCTAGTTTTTTTTCGAACTCATTTAAAAAACCATTTTTAGGACCCTCCTACCCAATGCCAGACTCCACCCATCCCCCACCATTGGCTCCTCGTACTACATCAAGAGTT</canonical_amplicon>
		<polymorphic_amplicon>TCTCTCATCTCTGGCTAGTTTTAAAAAAATTACCATCACCTGCCAGCCAGGTGTCTTTAAGATATATCCTAACAAGAGAACCTTTTAAGTTGTGATTAGTCCACAGAATGAAAGAGCGTCTTTCAAACCACCTAAAACCATATTCAAAATCTTCTTAAGAAGTCTTTGAAGTACTGGAATTTCCGTTTCAGTACCAGAAAATCACGTTTTCTGTGTAAAATCGGCAATTTTCAAATGTGATTTTCTCCAATCCTATGAGGTTTTTAAACTTGAATCATTTTGGGTTATACTTGAAATTATATGGAATTTCATATTTCGAAATTTTTCTTGAAAAATTTTAAGTTCTGACAATGAAACCTACCATRAGTGGAGAAAACCACATTTGAAAAATGCCGATTTTACACTGAAAAAAAATTTCTTGGTGCTGAAACTGAAATTCCATCATTTTAGAGGTTTCTTGAGCAGCTTTTAAAAACGGTTTCAAAAGTTTTGAAATACGCTCTTTCATTCTGTATACTTGGTTTGGACAAATCAGCCGGACAACTTGAAAGGTTCCCTCGTAAGAAATAGATTACTTTCTCTCTAGTTTTTTTTCGAACTCATTTAAAAAACCATTTTTAGGACCCTCCTACCCAATGCCAGACTCCACCCATCCCCCACCATTGGCTCCTCGTACTACATCAAGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39272</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>316182</contig_pos>
        <strand></strand>
        <context>gaaactgaaa[T/C]tccatcattt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAATGCCGATTTTACACTGAAAAAAAATTTCTTGGTGCTGAAACTGAAA</left_flank>
        <right_flank>TCCATCATTTTAGAGGTTTCTTGAGCAGCTTTTAAAAACGGTTTCAAAAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCTCCGCCCCATCACCAGCAACAATATGGAGGATATCCTAGAGATCATGGTGAATTTTTTTTTCTCTCATCTCTGGCTAGTTTTAAAAAAATTACCATCACCTGCCAGCCAGGTGTCTTTAAGATATATCCTAACAAGAGAACCTTTTAAGTTGTGATTAGTCCACAGAATGAAAGAGCGTCTTTCAAACCACCTAAAACCATATTCAAAATCTTCTTAAGAAGTCTTTGAAGTACTGGAATTTCCGTTTCAGTACCAGAAAATCACGTTTTCTGTGTAAAATCGGCAATTTTCAAATGTGATTTTCTCCAATCCTATGAGGTTTTTAAACTTGAATCATTTTGGGTTATACTTGAAATTATATGGAATTTCATATTTCGAAATTTTTCTTGAAAAATTTTAAGTTCTGACAATGAAACCTACCATAAGTGGAGAAAACCACATTTGAAAAATGCCGATTTTACACTGAAAAAAAATTTCTTGGTGCTGAAACTGAAATTCCATCATTTTAGAGGTTTCTTGAGCAGCTTTTAAAAACGGTTTCAAAAGTTTTGAAATACGCTCTTTCATTCTGTATACTTGGTTTGGACAAATCAGCCGGACAACTTGAAAGGTTCCCTCGTAAGAAATAGATTACTTTCTCTCTAGTTTTTTTTCGAACTCATTTAAAAAACCATTTTTAGGACCCTCCTACCCAATGCCAGACTCCACCCATCCCCCACCATTGGCTCCTCGTACTACATCAAGAGTTTTAACAGCTGCTCCATCCCAACAAGCACTCCAACAAATCCAAGCAAGTTCTCCATTCCGACGAAAGTCAATGGATCGAAACAGTCTCTCGAAGAAGTTTTTGGAAAACGGAGGAACCCAACCGAAAACTGTGTGGAGCTCATCGGCCCTTGCCACTTCAGGAGCTCCACGACGAAGTAATTCGAATCTTTTCGCTGCTACGAATCTTGAAGTTCCGTCTACAACAACGAATCTGTCAAGACGACGTGA</canonical>
            <polymorphic>GGCTCCGCCCCATCACCAGCAACAATATGGAGGATATCCTAGAGATCATGGTGAATTTTTTTTTCTCTCATCTCTGGCTAGTTTTAAAAAAATTACCATCACCTGCCAGCCAGGTGTCTTTAAGATATATCCTAACAAGAGAACCTTTTAAGTTGTGATTAGTCCACAGAATGAAAGAGCGTCTTTCAAACCACCTAAAACCATATTCAAAATCTTCTTAAGAAGTCTTTGAAGTACTGGAATTTCCGTTTCAGTACCAGAAAATCACGTTTTCTGTGTAAAATCGGCAATTTTCAAATGTGATTTTCTCCAATCCTATGAGGTTTTTAAACTTGAATCATTTTGGGTTATACTTGAAATTATATGGAATTTCATATTTCGAAATTTTTCTTGAAAAATTTTAAGTTCTGACAATGAAACCTACCATAAGTGGAGAAAACCACATTTGAAAAATGCCGATTTTACACTGAAAAAAAATTTCTTGGTGCTGAAACTGAAAYTCCATCATTTTAGAGGTTTCTTGAGCAGCTTTTAAAAACGGTTTCAAAAGTTTTGAAATACGCTCTTTCATTCTGTATACTTGGTTTGGACAAATCAGCCGGACAACTTGAAAGGTTCCCTCGTAAGAAATAGATTACTTTCTCTCTAGTTTTTTTTCGAACTCATTTAAAAAACCATTTTTAGGACCCTCCTACCCAATGCCAGACTCCACCCATCCCCCACCATTGGCTCCTCGTACTACATCAAGAGTTTTAACAGCTGCTCCATCCCAACAAGCACTCCAACAAATCCAAGCAAGTTCTCCATTCCGACGAAAGTCAATGGATCGAAACAGTCTCTCGAAGAAGTTTTTGGAAAACGGAGGAACCCAACCGAAAACTGTGTGGAGCTCATCGGCCCTTGCCACTTCAGGAGCTCCACGACGAAGTAATTCGAATCTTTTCGCTGCTACGAATCTTGAAGTTCCGTCTACAACAACGAATCTGTCAAGACGACGTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>503 187 127 79 53 22 15 14</canonical_bands>
                <polymorphic_bands>525 187 127 79 53 15 14</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>432 150 79 71 69 53 48 37 22 15 14 10</canonical_bands>
                <polymorphic_bands>454 150 79 71 69 53 48 37 15 14 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCTCATCTCTGGCTAGTTTTA</pcr_primer_p1>
		<pcr_primer_p2>AACTCTTGATGTAGTACGAGGAG</pcr_primer_p2>
		<pcr_amplicon_size>689</pcr_amplicon_size>
		<canonical_amplicon>TCTCTCATCTCTGGCTAGTTTTAAAAAAATTACCATCACCTGCCAGCCAGGTGTCTTTAAGATATATCCTAACAAGAGAACCTTTTAAGTTGTGATTAGTCCACAGAATGAAAGAGCGTCTTTCAAACCACCTAAAACCATATTCAAAATCTTCTTAAGAAGTCTTTGAAGTACTGGAATTTCCGTTTCAGTACCAGAAAATCACGTTTTCTGTGTAAAATCGGCAATTTTCAAATGTGATTTTCTCCAATCCTATGAGGTTTTTAAACTTGAATCATTTTGGGTTATACTTGAAATTATATGGAATTTCATATTTCGAAATTTTTCTTGAAAAATTTTAAGTTCTGACAATGAAACCTACCATAAGTGGAGAAAACCACATTTGAAAAATGCCGATTTTACACTGAAAAAAAATTTCTTGGTGCTGAAACTGAAATTCCATCATTTTAGAGGTTTCTTGAGCAGCTTTTAAAAACGGTTTCAAAAGTTTTGAAATACGCTCTTTCATTCTGTATACTTGGTTTGGACAAATCAGCCGGACAACTTGAAAGGTTCCCTCGTAAGAAATAGATTACTTTCTCTCTAGTTTTTTTTCGAACTCATTTAAAAAACCATTTTTAGGACCCTCCTACCCAATGCCAGACTCCACCCATCCCCCACCATTGGCTCCTCGTACTACATCAAGAGTT</canonical_amplicon>
		<polymorphic_amplicon>TCTCTCATCTCTGGCTAGTTTTAAAAAAATTACCATCACCTGCCAGCCAGGTGTCTTTAAGATATATCCTAACAAGAGAACCTTTTAAGTTGTGATTAGTCCACAGAATGAAAGAGCGTCTTTCAAACCACCTAAAACCATATTCAAAATCTTCTTAAGAAGTCTTTGAAGTACTGGAATTTCCGTTTCAGTACCAGAAAATCACGTTTTCTGTGTAAAATCGGCAATTTTCAAATGTGATTTTCTCCAATCCTATGAGGTTTTTAAACTTGAATCATTTTGGGTTATACTTGAAATTATATGGAATTTCATATTTCGAAATTTTTCTTGAAAAATTTTAAGTTCTGACAATGAAACCTACCATAAGTGGAGAAAACCACATTTGAAAAATGCCGATTTTACACTGAAAAAAAATTTCTTGGTGCTGAAACTGAAAYTCCATCATTTTAGAGGTTTCTTGAGCAGCTTTTAAAAACGGTTTCAAAAGTTTTGAAATACGCTCTTTCATTCTGTATACTTGGTTTGGACAAATCAGCCGGACAACTTGAAAGGTTCCCTCGTAAGAAATAGATTACTTTCTCTCTAGTTTTTTTTCGAACTCATTTAAAAAACCATTTTTAGGACCCTCCTACCCAATGCCAGACTCCACCCATCCCCCACCATTGGCTCCTCGTACTACATCAAGAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39273</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>348368</contig_pos>
        <strand></strand>
        <context>caacagaaaa[A/T]ttttggaacc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GCTTTAAAATGATTATTTTGACAAAAATGTGTCAAAAAATCAACAGAAAA</left_flank>
        <right_flank>TTTTGGAACCCGGGCCGGGATTTAGCAAGTATGATGTTTTCTCATCAAAT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAGAACGGGTGCTTCCCGAACACATTCAGTCTCATTACTCATTTAAATGTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGGGGGACGAAATCGAGGAATTCTTTTTTTTTGTGTCTGGCCTCCTTTAAACTTTTCATCATTTTTCGTTTTAGCTATTTTTGAGAGTAGCAAATTTCCATATTTTTCTTCACACCATTCTCAGTTACACTTGCAATAAATTGAATAAAAATATTCGGAACTATTTACTTTTTTCGTTTTCCATACATGTCGCGGGCCTGGCCGGTGGAGGAATTTTCACTAGCCCGGCCCGGCTGGCTGGTGTTTTTGAGACAAAAACTTTTGAGAGCCATTTTTAGAGAGAAAACTGGATTTGTGGGAACATTTCATCAAAAATTTCTTTGTTTTCAGCTTTAAGAAAGGTCCTGGGATAAATTTCGTGCTTTAAAATGATTATTTTGACAAAAATGTGTCAAAAAATCAACAGAAAAATTTTGGAACCCGGGCCGGGATTTAGCAAGTATGATGTTTTCTCATCAAATTTCACTCGATTGTGGAAAACGACGTTTCTTCGAAGCATGTTGAAATGTTATTCAAGCAAATTCCTTGAGAAAACTACAGTAAACTTTTTGTGCGCTGCGAGACCCATTAAATTTGCCGATGGGTGCGCCTTTAATTTTTTAATTTTCAATTTTTTCTTGTCGGTTTTCGCCTGCAAAAAAGCCAATCTTCGTCTCCACTGACATCGAAAAATGATTGAAATTCCACCGGAAGAACAGTACGAAACCGACACTATTTTTTCGCAAGAAGGAGATACCCCAGGTTTGTTTTCTAATTGTGAAAAACGCCTAAAACGGATTTTTTTTTCAGAATCCTACCTAGAAACGAAGCTTCTCGATTTCGAATCGGACAATGAAGTTTTTTCGGACTCGGAAAGTAATTTGGTCCGTTAATCGATTCGATATTTTTAATATAGAAATCATTTAAATTTT</canonical>
            <polymorphic>GCAGAACGGGTGCTTCCCGAACACATTCAGTCTCATTACTCATTTAAATGTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGGGGGACGAAATCGAGGAATTCTTTTTTTTTGTGTCTGGCCTCCTTTAAACTTTTCATCATTTTTCGTTTTAGCTATTTTTGAGAGTAGCAAATTTCCATATTTTTCTTCACACCATTCTCAGTTACACTTGCAATAAATTGAATAAAAATATTCGGAACTATTTACTTTTTTCGTTTTCCATACATGTCGCGGGCCTGGCCGGTGGAGGAATTTTCACTAGCCCGGCCCGGCTGGCTGGTGTTTTTGAGACAAAAACTTTTGAGAGCCATTTTTAGAGAGAAAACTGGATTTGTGGGAACATTTCATCAAAAATTTCTTTGTTTTCAGCTTTAAGAAAGGTCCTGGGATAAATTTCGTGCTTTAAAATGATTATTTTGACAAAAATGTGTCAAAAAATCAACAGAAAAWTTTTGGAACCCGGGCCGGGATTTAGCAAGTATGATGTTTTCTCATCAAATTTCACTCGATTGTGGAAAACGACGTTTCTTCGAAGCATGTTGAAATGTTATTCAAGCAAATTCCTTGAGAAAACTACAGTAAACTTTTTGTGCGCTGCGAGACCCATTAAATTTGCCGATGGGTGCGCCTTTAATTTTTTAATTTTCAATTTTTTCTTGTCGGTTTTCGCCTGCAAAAAAGCCAATCTTCGTCTCCACTGACATCGAAAAATGATTGAAATTCCACCGGAAGAACAGTACGAAACCGACACTATTTTTTCGCAAGAAGGAGATACCCCAGGTTTGTTTTCTAATTGTGAAAAACGCCTAAAACGGATTTTTTTTTCAGAATCCTACCTAGAAACGAAGCTTCTCGATTTCGAATCGGACAATGAAGTTTTTTCGGACTCGGAAAGTAATTTGGTCCGTTAATCGATTCGATATTTTTAATATAGAAATCATTTAAATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>226 119 109 102 74 72 61 57 51 49 39 35 6</canonical_bands>
                <polymorphic_bands>226 119 109 106 102 74 72 61 51 39 35 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>105 102 74 73 73 72 71 61 57 51 49 48 46 39 35 23 8 7 6</canonical_bands>
                <polymorphic_bands>106 105 102 74 73 73 72 71 61 51 48 46 39 35 23 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTGAATAAAAATATTCGGAACT</pcr_primer_p1>
		<pcr_primer_p2>GTGAAATTTGATGAGAAAACATC</pcr_primer_p2>
		<pcr_amplicon_size>328</pcr_amplicon_size>
		<canonical_amplicon>AATTGAATAAAAATATTCGGAACTATTTACTTTTTTCGTTTTCCATACATGTCGCGGGCCTGGCCGGTGGAGGAATTTTCACTAGCCCGGCCCGGCTGGCTGGTGTTTTTGAGACAAAAACTTTTGAGAGCCATTTTTAGAGAGAAAACTGGATTTGTGGGAACATTTCATCAAAAATTTCTTTGTTTTCAGCTTTAAGAAAGGTCCTGGGATAAATTTCGTGCTTTAAAATGATTATTTTGACAAAAATGTGTCAAAAAATCAACAGAAAAATTTTGGAACCCGGGCCGGGATTTAGCAAGTATGATGTTTTCTCATCAAATTTCAC</canonical_amplicon>
		<polymorphic_amplicon>AATTGAATAAAAATATTCGGAACTATTTACTTTTTTCGTTTTCCATACATGTCGCGGGCCTGGCCGGTGGAGGAATTTTCACTAGCCCGGCCCGGCTGGCTGGTGTTTTTGAGACAAAAACTTTTGAGAGCCATTTTTAGAGAGAAAACTGGATTTGTGGGAACATTTCATCAAAAATTTCTTTGTTTTCAGCTTTAAGAAAGGTCCTGGGATAAATTTCGTGCTTTAAAATGATTATTTTGACAAAAATGTGTCAAAAAATCAACAGAAAAWTTTTGGAACCCGGGCCGGGATTTAGCAAGTATGATGTTTTCTCATCAAATTTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39274</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>351229</contig_pos>
        <strand></strand>
        <context>gacgcaaatc[G/A]gtaaaaacra</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAATTTTCTGTGTTTGTTTGGGGAAAATAACAAGAAAATCGACGCAAATC</left_flank>
        <right_flank>GTAAAAACGAGATATGAAATCCGGGAAATGAAAAAAAATTTGGTTACGGT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCAAAACAGGAAGAATATTATCAGTAGTATTTTCATTTGAAACGTTTCAGAAGCGTTATTTTATGGGAAATAAGTCATGTTGCCTTTTTATAGTGAGATGTAAATCCCCAGACGGTCCGGTTGGGAACAGAGGATTATAGAGAACGTAAAAACATTTGTTGTTTCTGTATTTCAGAGATTTTTAACCTTACAAATCTATTTTTTATTGAGCCGTAATTTCTATCTCGGTTTAACTTTGTAAAGTGATTAAGGGACACTAAACCCATGATTCATAGGTACTAAGTTCCTGGGTAAAACATTTTTTATTATTATGCTGGTATGTAAAAATCGTAGCTGTGAAAGAGAAACGCCGATGGCCGTAGCTGAAGGTCCCACAGCGAAAACTACAGTAACCTGAAAGTGATTTTATTTTCCAAATGTTTTCCTCGGTTTTTTTTACGTTTTCAGTCAATTTTCTGTGTTTGTTTGGGGAAAATAACAAGAAAATCGACGCAAATCGGTAAAAACGAGATATGAAATCCGGGAAATGAAAAAAAATTTGGTTACGGTAGTTGTCGTCGCACAATTGTGGGAATTTCGGCCACAGCCACCCGCGTTTCTCTTCCACAGGTCCAATTTTTGAATACCATTTAATAAACCCAAAGGATTTTCAAATTTTGTTTCAATATGTTTCACAATATAACCAGTTTATTTCGTGTTGGGACCAATACAAACATTTAATTTATGCAATTGGTGCATATGGAACCACTGCGGGATTCTATGAGGAAGACGATGTCTAACGGCAAGTTCCCTTGTAGCAAGTGGCTGGTTTCTTGCAATCACATCTGTAGCAATCTCCTCCTGGTGGAACATAGCACAATCCGGTTGGTGGAACATTAAAGGATTGCTGGAAATTTGGGGTGGAAATATTGAATTGAATGGAAACAATACTTTATGGATATCTAACTTTTTTTTTTAAATATTATTCTCGCCCGGTAACGATGAACCTTACGACCGAAC</canonical>
            <polymorphic>AGCAAAACAGGAAGAATATTATCAGTAGTATTTTCATTTGAAACGTTTCAGAAGCGTTATTTTATGGGAAATAAGTCATGTTGCCTTTTTATAGTGAGATGTAAATCCCCAGACGGTCCGGTTGGGAACAGAGGATTATAGAGAACGTAAAAACATTTGTTGTTTCTGTATTTCAGAGATTTTTAACCTTACAAATCTATTTTTTATTGAGCCGTAATTTCTATCTCGGTTTAACTTTGTAAAGTGATTAAGGGACACTAAACCCATGATTCATAGGTACTAAGTTCCTGGGTAAAACATTTTTTATTATTATGCTGGTATGTAAAAATCGTAGCTGTGAAAGAGAAACGCCGATGGCCGTAGCTGAAGGTCCCACAGCGAAAACTACAGTAACCTGAAAGTGATTTTATTTTCCAAATGTTTTCCTCGGTTTTTTTTACGTTTTCAGTCAATTTTCTGTGTTTGTTTGGGGAAAATAACAAGAAAATCGACGCAAATCRGTAAAAACGAGATATGAAATCCGGGAAATGAAAAAAAATTTGGTTACGGTAGTTGTCGTCGCACAATTGTGGGAATTTCGGCCACAGCCACCCGCGTTTCTCTTCCACAGGTCCAATTTTTGAATACCATTTAATAAACCCAAAGGATTTTCAAATTTTGTTTCAATATGTTTCACAATATAACCAGTTTATTTCGTGTTGGGACCAATACAAACATTTAATTTATGCAATTGGTGCATATGGAACCACTGCGGGATTCTATGAGGAAGACGATGTCTAACGGCAAGTTCCCTTGTAGCAAGTGGCTGGTTTCTTGCAATCACATCTGTAGCAATCTCCTCCTGGTGGAACATAGCACAATCCGGTTGGTGGAACATTAAAGGATTGCTGGAAATTTGGGGTGGAAATATTGAATTGAATGGAAACAATACTTTATGGATATCTAACTTTTTTTTTTAAATATTATTCTCGCCCGGTAACGATGAACCTTACGACCGAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCTATCTCGGTTTAACTTTGT</pcr_primer_p1>
		<pcr_primer_p2>AACAAAATTTGAAAATCCTTTG</pcr_primer_p2>
		<pcr_amplicon_size>446</pcr_amplicon_size>
		<canonical_amplicon>ATTTCTATCTCGGTTTAACTTTGTAAAGTGATTAAGGGACACTAAACCCATGATTCATAGGTACTAAGTTCCTGGGTAAAACATTTTTTATTATTATGCTGGTATGTAAAAATCGTAGCTGTGAAAGAGAAACGCCGATGGCCGTAGCTGAAGGTCCCACAGCGAAAACTACAGTAACCTGAAAGTGATTTTATTTTCCAAATGTTTTCCTCGGTTTTTTTTACGTTTTCAGTCAATTTTCTGTGTTTGTTTGGGGAAAATAACAAGAAAATCGACGCAAATCGGTAAAAACGAGATATGAAATCCGGGAAATGAAAAAAAATTTGGTTACGGTAGTTGTCGTCGCACAATTGTGGGAATTTCGGCCACAGCCACCCGCGTTTCTCTTCCACAGGTCCAATTTTTGAATACCATTTAATAAACCCAAAGGATTTTCAAATTTTGTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTCTATCTCGGTTTAACTTTGTAAAGTGATTAAGGGACACTAAACCCATGATTCATAGGTACTAAGTTCCTGGGTAAAACATTTTTTATTATTATGCTGGTATGTAAAAATCGTAGCTGTGAAAGAGAAACGCCGATGGCCGTAGCTGAAGGTCCCACAGCGAAAACTACAGTAACCTGAAAGTGATTTTATTTTCCAAATGTTTTCCTCGGTTTTTTTTACGTTTTCAGTCAATTTTCTGTGTTTGTTTGGGGAAAATAACAAGAAAATCGACGCAAATCRGTAAAAACGAGATATGAAATCCGGGAAATGAAAAAAAATTTGGTTACGGTAGTTGTCGTCGCACAATTGTGGGAATTTCGGCCACAGCCACCCGCGTTTCTCTTCCACAGGTCCAATTTTTGAATACCATTTAATAAACCCAAAGGATTTTCAAATTTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39275</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>351238</contig_pos>
        <strand></strand>
        <context>crgtaaaaac[G/A]agatatgaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTGTTTGTTTGGGGAAAATAACAAGAAAATCGACGCAAATCGGTAAAAAC</left_flank>
        <right_flank>AGATATGAAATCCGGGAAATGAAAAAAAATTTGGTTACGGTAGTTGTCGT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAAGAATATTATCAGTAGTATTTTCATTTGAAACGTTTCAGAAGCGTTATTTTATGGGAAATAAGTCATGTTGCCTTTTTATAGTGAGATGTAAATCCCCAGACGGTCCGGTTGGGAACAGAGGATTATAGAGAACGTAAAAACATTTGTTGTTTCTGTATTTCAGAGATTTTTAACCTTACAAATCTATTTTTTATTGAGCCGTAATTTCTATCTCGGTTTAACTTTGTAAAGTGATTAAGGGACACTAAACCCATGATTCATAGGTACTAAGTTCCTGGGTAAAACATTTTTTATTATTATGCTGGTATGTAAAAATCGTAGCTGTGAAAGAGAAACGCCGATGGCCGTAGCTGAAGGTCCCACAGCGAAAACTACAGTAACCTGAAAGTGATTTTATTTTCCAAATGTTTTCCTCGGTTTTTTTTACGTTTTCAGTCAATTTTCTGTGTTTGTTTGGGGAAAATAACAAGAAAATCGACGCAAATCGGTAAAAACGAGATATGAAATCCGGGAAATGAAAAAAAATTTGGTTACGGTAGTTGTCGTCGCACAATTGTGGGAATTTCGGCCACAGCCACCCGCGTTTCTCTTCCACAGGTCCAATTTTTGAATACCATTTAATAAACCCAAAGGATTTTCAAATTTTGTTTCAATATGTTTCACAATATAACCAGTTTATTTCGTGTTGGGACCAATACAAACATTTAATTTATGCAATTGGTGCATATGGAACCACTGCGGGATTCTATGAGGAAGACGATGTCTAACGGCAAGTTCCCTTGTAGCAAGTGGCTGGTTTCTTGCAATCACATCTGTAGCAATCTCCTCCTGGTGGAACATAGCACAATCCGGTTGGTGGAACATTAAAGGATTGCTGGAAATTTGGGGTGGAAATATTGAATTGAATGGAAACAATACTTTATGGATATCTAACTTTTTTTTTTAAATATTATTCTCGCCCGGTAACGATGAACCTTACGACCGAACATTTATTTA</canonical>
            <polymorphic>GGAAGAATATTATCAGTAGTATTTTCATTTGAAACGTTTCAGAAGCGTTATTTTATGGGAAATAAGTCATGTTGCCTTTTTATAGTGAGATGTAAATCCCCAGACGGTCCGGTTGGGAACAGAGGATTATAGAGAACGTAAAAACATTTGTTGTTTCTGTATTTCAGAGATTTTTAACCTTACAAATCTATTTTTTATTGAGCCGTAATTTCTATCTCGGTTTAACTTTGTAAAGTGATTAAGGGACACTAAACCCATGATTCATAGGTACTAAGTTCCTGGGTAAAACATTTTTTATTATTATGCTGGTATGTAAAAATCGTAGCTGTGAAAGAGAAACGCCGATGGCCGTAGCTGAAGGTCCCACAGCGAAAACTACAGTAACCTGAAAGTGATTTTATTTTCCAAATGTTTTCCTCGGTTTTTTTTACGTTTTCAGTCAATTTTCTGTGTTTGTTTGGGGAAAATAACAAGAAAATCGACGCAAATCGGTAAAAACRAGATATGAAATCCGGGAAATGAAAAAAAATTTGGTTACGGTAGTTGTCGTCGCACAATTGTGGGAATTTCGGCCACAGCCACCCGCGTTTCTCTTCCACAGGTCCAATTTTTGAATACCATTTAATAAACCCAAAGGATTTTCAAATTTTGTTTCAATATGTTTCACAATATAACCAGTTTATTTCGTGTTGGGACCAATACAAACATTTAATTTATGCAATTGGTGCATATGGAACCACTGCGGGATTCTATGAGGAAGACGATGTCTAACGGCAAGTTCCCTTGTAGCAAGTGGCTGGTTTCTTGCAATCACATCTGTAGCAATCTCCTCCTGGTGGAACATAGCACAATCCGGTTGGTGGAACATTAAAGGATTGCTGGAAATTTGGGGTGGAAATATTGAATTGAATGGAAACAATACTTTATGGATATCTAACTTTTTTTTTTAAATATTATTCTCGCCCGGTAACGATGAACCTTACGACCGAACATTTATTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCTATCTCGGTTTAACTTTGT</pcr_primer_p1>
		<pcr_primer_p2>AACAAAATTTGAAAATCCTTTG</pcr_primer_p2>
		<pcr_amplicon_size>446</pcr_amplicon_size>
		<canonical_amplicon>ATTTCTATCTCGGTTTAACTTTGTAAAGTGATTAAGGGACACTAAACCCATGATTCATAGGTACTAAGTTCCTGGGTAAAACATTTTTTATTATTATGCTGGTATGTAAAAATCGTAGCTGTGAAAGAGAAACGCCGATGGCCGTAGCTGAAGGTCCCACAGCGAAAACTACAGTAACCTGAAAGTGATTTTATTTTCCAAATGTTTTCCTCGGTTTTTTTTACGTTTTCAGTCAATTTTCTGTGTTTGTTTGGGGAAAATAACAAGAAAATCGACGCAAATCGGTAAAAACGAGATATGAAATCCGGGAAATGAAAAAAAATTTGGTTACGGTAGTTGTCGTCGCACAATTGTGGGAATTTCGGCCACAGCCACCCGCGTTTCTCTTCCACAGGTCCAATTTTTGAATACCATTTAATAAACCCAAAGGATTTTCAAATTTTGTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTCTATCTCGGTTTAACTTTGTAAAGTGATTAAGGGACACTAAACCCATGATTCATAGGTACTAAGTTCCTGGGTAAAACATTTTTTATTATTATGCTGGTATGTAAAAATCGTAGCTGTGAAAGAGAAACGCCGATGGCCGTAGCTGAAGGTCCCACAGCGAAAACTACAGTAACCTGAAAGTGATTTTATTTTCCAAATGTTTTCCTCGGTTTTTTTTACGTTTTCAGTCAATTTTCTGTGTTTGTTTGGGGAAAATAACAAGAAAATCGACGCAAATCGGTAAAAACRAGATATGAAATCCGGGAAATGAAAAAAAATTTGGTTACGGTAGTTGTCGTCGCACAATTGTGGGAATTTCGGCCACAGCCACCCGCGTTTCTCTTCCACAGGTCCAATTTTTGAATACCATTTAATAAACCCAAAGGATTTTCAAATTTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39276</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>351253</contig_pos>
        <strand></strand>
        <context>atgaaatccg[G/C]gaaatgaaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>AAATAACAAGAAAATCGACGCAAATCGGTAAAAACGAGATATGAAATCCG</left_flank>
        <right_flank>GAAATGAAAAAAAATTTGGTTACGGTAGTTGTCGTCGCACAATTGTGGGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTAGTATTTTCATTTGAAACGTTTCAGAAGCGTTATTTTATGGGAAATAAGTCATGTTGCCTTTTTATAGTGAGATGTAAATCCCCAGACGGTCCGGTTGGGAACAGAGGATTATAGAGAACGTAAAAACATTTGTTGTTTCTGTATTTCAGAGATTTTTAACCTTACAAATCTATTTTTTATTGAGCCGTAATTTCTATCTCGGTTTAACTTTGTAAAGTGATTAAGGGACACTAAACCCATGATTCATAGGTACTAAGTTCCTGGGTAAAACATTTTTTATTATTATGCTGGTATGTAAAAATCGTAGCTGTGAAAGAGAAACGCCGATGGCCGTAGCTGAAGGTCCCACAGCGAAAACTACAGTAACCTGAAAGTGATTTTATTTTCCAAATGTTTTCCTCGGTTTTTTTTACGTTTTCAGTCAATTTTCTGTGTTTGTTTGGGGAAAATAACAAGAAAATCGACGCAAATCGGTAAAAACGAGATATGAAATCCGGGAAATGAAAAAAAATTTGGTTACGGTAGTTGTCGTCGCACAATTGTGGGAATTTCGGCCACAGCCACCCGCGTTTCTCTTCCACAGGTCCAATTTTTGAATACCATTTAATAAACCCAAAGGATTTTCAAATTTTGTTTCAATATGTTTCACAATATAACCAGTTTATTTCGTGTTGGGACCAATACAAACATTTAATTTATGCAATTGGTGCATATGGAACCACTGCGGGATTCTATGAGGAAGACGATGTCTAACGGCAAGTTCCCTTGTAGCAAGTGGCTGGTTTCTTGCAATCACATCTGTAGCAATCTCCTCCTGGTGGAACATAGCACAATCCGGTTGGTGGAACATTAAAGGATTGCTGGAAATTTGGGGTGGAAATATTGAATTGAATGGAAACAATACTTTATGGATATCTAACTTTTTTTTTTAAATATTATTCTCGCCCGGTAACGATGAACCTTACGACCGAACATTTATTTAAAGGCTCGTCATCGG</canonical>
            <polymorphic>GTAGTATTTTCATTTGAAACGTTTCAGAAGCGTTATTTTATGGGAAATAAGTCATGTTGCCTTTTTATAGTGAGATGTAAATCCCCAGACGGTCCGGTTGGGAACAGAGGATTATAGAGAACGTAAAAACATTTGTTGTTTCTGTATTTCAGAGATTTTTAACCTTACAAATCTATTTTTTATTGAGCCGTAATTTCTATCTCGGTTTAACTTTGTAAAGTGATTAAGGGACACTAAACCCATGATTCATAGGTACTAAGTTCCTGGGTAAAACATTTTTTATTATTATGCTGGTATGTAAAAATCGTAGCTGTGAAAGAGAAACGCCGATGGCCGTAGCTGAAGGTCCCACAGCGAAAACTACAGTAACCTGAAAGTGATTTTATTTTCCAAATGTTTTCCTCGGTTTTTTTTACGTTTTCAGTCAATTTTCTGTGTTTGTTTGGGGAAAATAACAAGAAAATCGACGCAAATCGGTAAAAACGAGATATGAAATCCGSGAAATGAAAAAAAATTTGGTTACGGTAGTTGTCGTCGCACAATTGTGGGAATTTCGGCCACAGCCACCCGCGTTTCTCTTCCACAGGTCCAATTTTTGAATACCATTTAATAAACCCAAAGGATTTTCAAATTTTGTTTCAATATGTTTCACAATATAACCAGTTTATTTCGTGTTGGGACCAATACAAACATTTAATTTATGCAATTGGTGCATATGGAACCACTGCGGGATTCTATGAGGAAGACGATGTCTAACGGCAAGTTCCCTTGTAGCAAGTGGCTGGTTTCTTGCAATCACATCTGTAGCAATCTCCTCCTGGTGGAACATAGCACAATCCGGTTGGTGGAACATTAAAGGATTGCTGGAAATTTGGGGTGGAAATATTGAATTGAATGGAAACAATACTTTATGGATATCTAACTTTTTTTTTTAAATATTATTCTCGCCCGGTAACGATGAACCTTACGACCGAACATTTATTTAAAGGCTCGTCATCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>498 451 51</canonical_bands>
                <polymorphic_bands>949 51</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>320 264 234 131 51</canonical_bands>
                <polymorphic_bands>554 264 131 51</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>403 341 111 94 51</canonical_bands>
                <polymorphic_bands>744 111 94 51</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCTATCTCGGTTTAACTTTGT</pcr_primer_p1>
		<pcr_primer_p2>AACAAAATTTGAAAATCCTTTG</pcr_primer_p2>
		<pcr_amplicon_size>446</pcr_amplicon_size>
		<canonical_amplicon>ATTTCTATCTCGGTTTAACTTTGTAAAGTGATTAAGGGACACTAAACCCATGATTCATAGGTACTAAGTTCCTGGGTAAAACATTTTTTATTATTATGCTGGTATGTAAAAATCGTAGCTGTGAAAGAGAAACGCCGATGGCCGTAGCTGAAGGTCCCACAGCGAAAACTACAGTAACCTGAAAGTGATTTTATTTTCCAAATGTTTTCCTCGGTTTTTTTTACGTTTTCAGTCAATTTTCTGTGTTTGTTTGGGGAAAATAACAAGAAAATCGACGCAAATCGGTAAAAACGAGATATGAAATCCGGGAAATGAAAAAAAATTTGGTTACGGTAGTTGTCGTCGCACAATTGTGGGAATTTCGGCCACAGCCACCCGCGTTTCTCTTCCACAGGTCCAATTTTTGAATACCATTTAATAAACCCAAAGGATTTTCAAATTTTGTT</canonical_amplicon>
		<polymorphic_amplicon>ATTTCTATCTCGGTTTAACTTTGTAAAGTGATTAAGGGACACTAAACCCATGATTCATAGGTACTAAGTTCCTGGGTAAAACATTTTTTATTATTATGCTGGTATGTAAAAATCGTAGCTGTGAAAGAGAAACGCCGATGGCCGTAGCTGAAGGTCCCACAGCGAAAACTACAGTAACCTGAAAGTGATTTTATTTTCCAAATGTTTTCCTCGGTTTTTTTTACGTTTTCAGTCAATTTTCTGTGTTTGTTTGGGGAAAATAACAAGAAAATCGACGCAAATCGGTAAAAACGAGATATGAAATCCGSGAAATGAAAAAAAATTTGGTTACGGTAGTTGTCGTCGCACAATTGTGGGAATTTCGGCCACAGCCACCCGCGTTTCTCTTCCACAGGTCCAATTTTTGAATACCATTTAATAAACCCAAAGGATTTTCAAATTTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39277</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>364541</contig_pos>
        <strand>+</strand>
        <context>GATCTGAAAA[A/G]GGATATTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAGGAGACTTTCAATCGACTTAATTTCTGGTAAAGTAGATCTGAAAA</left_flank>
        <right_flank>GGATATTTTCCCAGTATTGTCAGAATTACAAAGTTTATTAATTACCAGAA</right_flank>
        <qual_score>132</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCCCATTGATTCTAAATTCTCTTTCAATTTTTTTTTGATTTACAACAAAATGAATGACATGCAATCGTGTCGTTTTCTCTTCAACTGATAACACAATTCCGTTTTTGATGATAACTGTCAAAAGTCTCGTGTAACACGCGCCGCCGAAGATCCGATAGTCATTTCTTATGTTTTGTTCTTTTTTTTTTCGATGATAGACCAATCCGGATTAAACTCCGGGAGTTTTTTTTAAAAATATAATCAGAAAAGTAGCTTGAAAATTATTGAAATTTTGTATTATACCGTAAAACCTGTATTAGAAGAGCCCCATTAACAGAATAACCCATGTAATAAAAAGGCTCTCCTGAGGTACCTTGGAACGGTTGGCTCTTGTAATACAGGTTTCACAGTAACTGCGAGTTTTAAAACTTTTTAAGCACAACAATTAAGTCGACTGGGAGTCTCATTTAAAAAGGAGACTTTCAATCGACTTAATTTCTGGTAAAGTAGATCTGAAAAGGGATATTTTCCCAGTATTGTCAGAATTACAAAGTTTATTAATTACCAGAAGACAAATATGCAAGTGAAGCATTTTTCAACATTTTAGTCTTTAATTTTTTCAGGTGAACTATCTGAAGAATCATCAATATAGGTGTGGCCGATTCTAAATATCCTAGTTTCATCTTTTAAAAACCATCATTACATCATAATGTCTACAACTGAAAGGATAAAAATTTTTTTGATTCAAATTATGACCTTAAAAGATGGAGGGCAGGAGATTTTTGGCTTTTTTTGAAGCTAGGGTATGCATTCTGACGTAATGGTGTTTTTTCATGTTTCAAAAAACAAAACCATGTTTTGGCTGTAACTTATCAGTGACCTATATCGCCCAGGTAATTGTTCTTCTTGTAAAAACAGTCTCTAACTTTTTTTTCAACTTTATATGCTCAAAAATCGTTTCCTTCTACTTTTCCTTATCAATTCTGCCTTTTTTTCTATTTACATTCTTTTTCTTGACAG</canonical>
            <polymorphic>ACCCCATTGATTCTAAATTCTCTTTCAATTTTTTTTTGATTTACAACAAAATGAATGACATGCAATCGTGTCGTTTTCTCTTCAACTGATAACACAATTCCGTTTTTGATGATAACTGTCAAAAGTCTCGTGTAACACGCGCCGCCGAAGATCCGATAGTCATTTCTTATGTTTTGTTCTTTTTTTTTTCGATGATAGACCAATCCGGATTAAACTCCGGGAGTTTTTTTTAAAAATATAATCAGAAAAGTAGCTTGAAAATTATTGAAATTTTGTATTATACCGTAAAACCTGTATTAGAAGAGCCCCATTAACAGAATAACCCATGTAATAAAAAGGCTCTCCTGAGGTACCTTGGAACGGTTGGCTCTTGTAATACAGGTTTCACAGTAACTGCGAGTTTTAAAACTTTTTAAGCACAACAATTAAGTCGACTGGGAGTCTCATTTAAAAAGGAGACTTTCAATCGACTTAATTTCTGGTAAAGTAGATCTGAAAARGGATATTTTCCCAGTATTGTCAGAATTACAAAGTTTATTAATTACCAGAAGACAAATATGCAAGTGAAGCATTTTTCAACATTTTAGTCTTTAATTTTTTCAGGTGAACTATCTGAAGAATCATCAATATAGGTGTGGCCGATTCTAAATATCCTAGTTTCATCTTTTAAAAACCATCATTACATCATAATGTCTACAACTGAAAGGATAAAAATTTTTTTGATTCAAATTATGACCTTAAAAGATGGAGGGCAGGAGATTTTTGGCTTTTTTTGAAGCTAGGGTATGCATTCTGACGTAATGGTGTTTTTTCATGTTTCAAAAAACAAAACCATGTTTTGGCTGTAACTTATCAGTGACCTATATCGCCCAGGTAATTGTTCTTCTTGTAAAAACAGTCTCTAACTTTTTTTTCAACTTTATATGCTCAAAAATCGTTTCCTTCTACTTTTCCTTATCAATTCTGCCTTTTTTTCTATTTACATTCTTTTTCTTGACAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATTTAAAAAGGAGACTTTCAA</pcr_primer_p1>
		<pcr_primer_p2>CATTATGATGTAATGATGGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCATTTAAAAAGGAGACTTTCAATCGACTTAATTTCTGGTAAAGTAGATCTGAAAAGGGATATTTTCCCAGTATTGTCAGAATTACAAAGTTTATTAATTACCAGAAGACAAATATGCAAGTGAAGCATTTTTCAACATTTTAGTCTTTAATTTTTTCAGGTGAACTATCTGAAGAATCATCAATATAGGTGTGGCCGATTCTAAATATCCTAGTTTCATCTTTTAAAAACCATCATTACATCATAATG</canonical_amplicon>
		<polymorphic_amplicon>TCATTTAAAAAGGAGACTTTCAATCGACTTAATTTCTGGTAAAGTAGATCTGAAAARGGATATTTTCCCAGTATTGTCAGAATTACAAAGTTTATTAATTACCAGAAGACAAATATGCAAGTGAAGCATTTTTCAACATTTTAGTCTTTAATTTTTTCAGGTGAACTATCTGAAGAATCATCAATATAGGTGTGGCCGATTCTAAATATCCTAGTTTCATCTTTTAAAAACCATCATTACATCATAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39278</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>364638</contig_pos>
        <strand>+</strand>
        <context>GTCTTTAATT[G/T]TTTCAGGTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AGAAGACAAATATGCAAGTGAAGCATTTTTCAACATTTTAGTCTTTAATT</left_flank>
        <right_flank>TTTCAGGTGAACTATCTGAAGAATCATCAATATAGGTGTGGCCGATTCTA</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCGTTTTTGATGATAACTGTCAAAAGTCTCGTGTAACACGCGCCGCCGAAGATCCGATAGTCATTTCTTATGTTTTGTTCTTTTTTTTTTCGATGATAGACCAATCCGGATTAAACTCCGGGAGTTTTTTTTAAAAATATAATCAGAAAAGTAGCTTGAAAATTATTGAAATTTTGTATTATACCGTAAAACCTGTATTAGAAGAGCCCCATTAACAGAATAACCCATGTAATAAAAAGGCTCTCCTGAGGTACCTTGGAACGGTTGGCTCTTGTAATACAGGTTTCACAGTAACTGCGAGTTTTAAAACTTTTTAAGCACAACAATTAAGTCGACTGGGAGTCTCATTTAAAAAGGAGACTTTCAATCGACTTAATTTCTGGTAAAGTAGATCTGAAAAGGGATATTTTCCCAGTATTGTCAGAATTACAAAGTTTATTAATTACCAGAAGACAAATATGCAAGTGAAGCATTTTTCAACATTTTAGTCTTTAATTTTTTCAGGTGAACTATCTGAAGAATCATCAATATAGGTGTGGCCGATTCTAAATATCCTAGTTTCATCTTTTAAAAACCATCATTACATCATAATGTCTACAACTGAAAGGATAAAAATTTTTTTGATTCAAATTATGACCTTAAAAGATGGAGGGCAGGAGATTTTTGGCTTTTTTTGAAGCTAGGGTATGCATTCTGACGTAATGGTGTTTTTTCATGTTTCAAAAAACAAAACCATGTTTTGGCTGTAACTTATCAGTGACCTATATCGCCCAGGTAATTGTTCTTCTTGTAAAAACAGTCTCTAACTTTTTTTTCAACTTTATATGCTCAAAAATCGTTTCCTTCTACTTTTCCTTATCAATTCTGCCTTTTTTTCTATTTACATTCTTTTTCTTGACAGACTTTCCTGTTTCTCCATTTTAAGAATCAAACGAAATGCTTTAGGATTATGAGTGCAGGAAACGCGATAAAAGACGATCCCCTATCATATGATCATT</canonical>
            <polymorphic>TTCCGTTTTTGATGATAACTGTCAAAAGTCTCGTGTAACACGCGCCGCCGAAGATCCGATAGTCATTTCTTATGTTTTGTTCTTTTTTTTTTCGATGATAGACCAATCCGGATTAAACTCCGGGAGTTTTTTTTAAAAATATAATCAGAAAAGTAGCTTGAAAATTATTGAAATTTTGTATTATACCGTAAAACCTGTATTAGAAGAGCCCCATTAACAGAATAACCCATGTAATAAAAAGGCTCTCCTGAGGTACCTTGGAACGGTTGGCTCTTGTAATACAGGTTTCACAGTAACTGCGAGTTTTAAAACTTTTTAAGCACAACAATTAAGTCGACTGGGAGTCTCATTTAAAAAGGAGACTTTCAATCGACTTAATTTCTGGTAAAGTAGATCTGAAAAGGGATATTTTCCCAGTATTGTCAGAATTACAAAGTTTATTAATTACCAGAAGACAAATATGCAAGTGAAGCATTTTTCAACATTTTAGTCTTTAATTKTTTCAGGTGAACTATCTGAAGAATCATCAATATAGGTGTGGCCGATTCTAAATATCCTAGTTTCATCTTTTAAAAACCATCATTACATCATAATGTCTACAACTGAAAGGATAAAAATTTTTTTGATTCAAATTATGACCTTAAAAGATGGAGGGCAGGAGATTTTTGGCTTTTTTTGAAGCTAGGGTATGCATTCTGACGTAATGGTGTTTTTTCATGTTTCAAAAAACAAAACCATGTTTTGGCTGTAACTTATCAGTGACCTATATCGCCCAGGTAATTGTTCTTCTTGTAAAAACAGTCTCTAACTTTTTTTTCAACTTTATATGCTCAAAAATCGTTTCCTTCTACTTTTCCTTATCAATTCTGCCTTTTTTTCTATTTACATTCTTTTTCTTGACAGACTTTCCTGTTTCTCCATTTTAAGAATCAAACGAAATGCTTTAGGATTATGAGTGCAGGAAACGCGATAAAAGACGATCCCCTATCATATGATCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATATTTTCCCAGTATTGTCAGA</pcr_primer_p1>
		<pcr_primer_p2>CCTCCATCTTTTAAGGTCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATATTTTCCCAGTATTGTCAGAATTACAAAGTTTATTAATTACCAGAAGACAAATATGCAAGTGAAGCATTTTTCAACATTTTAGTCTTTAATTTTTTCAGGTGAACTATCTGAAGAATCATCAATATAGGTGTGGCCGATTCTAAATATCCTAGTTTCATCTTTTAAAAACCATCATTACATCATAATGTCTACAACTGAAAGGATAAAAATTTTTTTGATTCAAATTATGACCTTAAAAGATGGAGG</canonical_amplicon>
		<polymorphic_amplicon>GATATTTTCCCAGTATTGTCAGAATTACAAAGTTTATTAATTACCAGAAGACAAATATGCAAGTGAAGCATTTTTCAACATTTTAGTCTTTAATTKTTTCAGGTGAACTATCTGAAGAATCATCAATATAGGTGTGGCCGATTCTAAATATCCTAGTTTCATCTTTTAAAAACCATCATTACATCATAATGTCTACAACTGAAAGGATAAAAATTTTTTTGATTCAAATTATGACCTTAAAAGATGGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39279</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>392774</contig_pos>
        <strand>+</strand>
        <context>CGAAACTTTC[A/G]CAGAACTCGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGGCACCTGTAATCAAAGGGATTCTGGAAGCATACTCCTCCGAAACTTTC</left_flank>
        <right_flank>CAGAACTCGTAGAATCGCTTGCCTCATGCTCAAACTCGAACATCCCACGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTGTAGTCCTCGTGAACGATTTCTGAAAAAAAATTTTCATAAAAATTTTGCAAAATGGAGCCTGTTCTACAACCCTGGGATGATTCTCAAACAATTGCAAAGTCAAAAATCACAAGCAGAGTAAGTAGAAATCTCGCAAAACTTCAAAATTCGTTATTCATCAGGCCTCAATTCGAATTTTCGAGAAATATCCACTGAAAGAAGAAAATGTTTCAACTCTGTTCAGCACTGAAGAAATGGCTGGAGGAGAGCCAGAAGAGCTGTACAAACTGGTAGTTTATTTAATAAAATTTGAAAATCAATCCTTTTTTATTCAGTGCCGACAACTTCTGAACGTATGGAAATATGCCATATTCTTTCAACCGAAGCCTGAGAATTTTGCGAATCTTCTACAAGAGGTTCGATATACTTCACTAGCTTTTAAGAGCTTTTTTTCAGTCAAATTATCCGGCACCTGTAATCAAAGGGATTCTGGAAGCATACTCCTCCGAAACTTTCACAGAACTCGTAGAATCGCTTGCCTCATGCTCAAACTCGAACATCCCACGTGTCATTTCTACCGATTGGACTTGTCGTGCTGTTGCTCGACAGAATAACATAGCGTTTTCGGATCGAGAGGCAACTCTGACACTATCCACCGATAAAGGAGTGAAACAAGTAAATTTGTCTGCGAAGGAGCTCGAGAAATTGTACTGGACAGTCAGCAAAGTGCAAGAATCGCTAGATGGACTGTTGGAAAGATGATTATTAAAAATTCATGAAAACTAATCTATTACAAAGATCCTACGAAAATAAACATTGAATATGAAAAAAAAACAATTATTCGAAAATCAACAAGAAAGCACCCGCTAGAACCTAACAAAACAACAGAAAAACAGATTAGGAATTTCTCAAAAATTTGTCATAAGCCACGGGAAAAGTTTTAGCAGCTAACATGGCGAATCCAGCGTCTGATGGGTAGAGGAAGTGTTCAAGACTGACGAGGTCCGAGTGCGCCGA</canonical>
            <polymorphic>CGTGTAGTCCTCGTGAACGATTTCTGAAAAAAAATTTTCATAAAAATTTTGCAAAATGGAGCCTGTTCTACAACCCTGGGATGATTCTCAAACAATTGCAAAGTCAAAAATCACAAGCAGAGTAAGTAGAAATCTCGCAAAACTTCAAAATTCGTTATTCATCAGGCCTCAATTCGAATTTTCGAGAAATATCCACTGAAAGAAGAAAATGTTTCAACTCTGTTCAGCACTGAAGAAATGGCTGGAGGAGAGCCAGAAGAGCTGTACAAACTGGTAGTTTATTTAATAAAATTTGAAAATCAATCCTTTTTTATTCAGTGCCGACAACTTCTGAACGTATGGAAATATGCCATATTCTTTCAACCGAAGCCTGAGAATTTTGCGAATCTTCTACAAGAGGTTCGATATACTTCACTAGCTTTTAAGAGCTTTTTTTCAGTCAAATTATCCGGCACCTGTAATCAAAGGGATTCTGGAAGCATACTCCTCCGAAACTTTCRCAGAACTCGTAGAATCGCTTGCCTCATGCTCAAACTCGAACATCCCACGTGTCATTTCTACCGATTGGACTTGTCGTGCTGTTGCTCGACAGAATAACATAGCGTTTTCGGATCGAGAGGCAACTCTGACACTATCCACCGATAAAGGAGTGAAACAAGTAAATTTGTCTGCGAAGGAGCTCGAGAAATTGTACTGGACAGTCAGCAAAGTGCAAGAATCGCTAGATGGACTGTTGGAAAGATGATTATTAAAAATTCATGAAAACTAATCTATTACAAAGATCCTACGAAAATAAACATTGAATATGAAAAAAAAACAATTATTCGAAAATCAACAAGAAAGCACCCGCTAGAACCTAACAAAACAACAGAAAAACAGATTAGGAATTTCTCAAAAATTTGTCATAAGCCACGGGAAAAGTTTTAGCAGCTAACATGGCGAATCCAGCGTCTGATGGGTAGAGGAAGTGTTCAAGACTGACGAGGTCCGAGTGCGCCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>133 98 94 91 82 67 60 58 53 47 46 40 34 27 24 14 11 7 6 4 4</canonical_bands>
                <polymorphic_bands>133 98 94 93 91 82 67 60 58 53 40 34 27 24 14 11 7 6 4 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAGGTTCGATATACTTCACTAGC</pcr_primer_p1>
		<pcr_primer_p2>TATCGGTGGATAGTGTCAGAGT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGAGGTTCGATATACTTCACTAGCTTTTAAGAGCTTTTTTTCAGTCAAATTATCCGGCACCTGTAATCAAAGGGATTCTGGAAGCATACTCCTCCGAAACTTTCACAGAACTCGTAGAATCGCTTGCCTCATGCTCAAACTCGAACATCCCACGTGTCATTTCTACCGATTGGACTTGTCGTGCTGTTGCTCGACAGAATAACATAGCGTTTTCGGATCGAGAGGCAACTCTGACACTATCCACCGATA</canonical_amplicon>
		<polymorphic_amplicon>AGAGGTTCGATATACTTCACTAGCTTTTAAGAGCTTTTTTTCAGTCAAATTATCCGGCACCTGTAATCAAAGGGATTCTGGAAGCATACTCCTCCGAAACTTTCRCAGAACTCGTAGAATCGCTTGCCTCATGCTCAAACTCGAACATCCCACGTGTCATTTCTACCGATTGGACTTGTCGTGCTGTTGCTCGACAGAATAACATAGCGTTTTCGGATCGAGAGGCAACTCTGACACTATCCACCGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39280</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>450435</contig_pos>
        <strand>+</strand>
        <context>TTGAAATTTG[A/C]TGTAGCCTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAGTTACAGAATGTCCCAATGAACCATAGATCCTCAAGATTTGAAATTTG</left_flank>
        <right_flank>TGTAGCCTTTAAAATGAAATAAAATTATCCTACTATAGTAGGTTACTACT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGCAGGATTAGCCATCATGAGTAATTAGTTACTAATTACGTTACAGTAATAGAAAATAATACAATATCTGAGCTACTGGCATAACTCTCAAAACATAATTTAAACCTAAACCGTTGAAACTGACTATGAGTAAATTCTCATCTGAACCAGTTTTTGTAGGTCAACTAGAGACTGATGCCTGTGTATTCCATTTGTGAAATTTGCCATGTTTGTTAATTTACCATTATTATAAATCTGAAAATTTTTATTCATTTCTAGAAACCGGCCAGCGGGCCTGACCGGACTGGGCTGGGCCCGGGTTTATTACATTTGAAAAAAAGATGAAATTTCTGCAATTTTCTCAAATTCTTTTGATAAAAAATGTTTCGAATAATACACAGTCCGGCTCGGCTCGGTTTGTTGCAAATATGAAATATTCCTTATTTCACCTTCAGATTATTGCTCATGTCAGTTACAGAATGTCCCAATGAACCATAGATCCTCAAGATTTGAAATTTGATGTAGCCTTTAAAATGAAATAAAATTATCCTACTATAGTAGGTTACTACTAGGGTTATAGTTCGAACTTTTCCGTAAAACCAAAATTATCTTCGTACTTGATAGAAATATCAAAACCTGGCAAAATAATGTCAAAAAATTTTACGGCATTTCCTCTAACATAAGCAAACTCAAACCGCTGACTTCGAGCTCAATTATCTCGATTCCCGTGAAAGATATCAAACAGTGGTCAACTAATAAATATTGGTGATATTATGATAAGCATTCTGTTAGAGGTTCACTTGTTGATATCTTTCACACGAATCGAGATATTTGAGCTCAAATAGACTCAACTCTCAATTTAGCGCTGACTTTGATAGTTTCGTATATTTTTCGGTTCCAAAAGGAAAATCTCTTCTGTTTTATTTTTTTTACAAAAAAAATTTGCAAATCCAAACAAAAATAGAACTGAAAAAGCCGAATGTACCCGAAATTGTATTTACCGATAACATGCTAATAGAT</canonical>
            <polymorphic>TAGCAGGATTAGCCATCATGAGTAATTAGTTACTAATTACGTTACAGTAATAGAAAATAATACAATATCTGAGCTACTGGCATAACTCTCAAAACATAATTTAAACCTAAACCGTTGAAACTGACTATGAGTAAATTCTCATCTGAACCAGTTTTTGTAGGTCAACTAGAGACTGATGCCTGTGTATTCCATTTGTGAAATTTGCCATGTTTGTTAATTTACCATTATTATAAATCTGAAAATTTTTATTCATTTCTAGAAACCGGCCAGCGGGCCTGACCGGACTGGGCTGGGCCCGGGTTTATTACATTTGAAAAAAAGATGAAATTTCTGCAATTTTCTCAAATTCTTTTGATAAAAAATGTTTCGAATAATACACAGTCCGGCTCGGCTCGGTTTGTTGCAAATATGAAATATTCCTTATTTCACCTTCAGATTATTGCTCATGTCAGTTACAGAATGTCCCAATGAACCATAGATCCTCAAGATTTGAAATTTGMTGTAGCCTTTAAAATGAAATAAAATTATCCTACTATAGTAGGTTACTACTAGGGTTATAGTTCGAACTTTTCCGTAAAACCAAAATTATCTTCGTACTTGATAGAAATATCAAAACCTGGCAAAATAATGTCAAAAAATTTTACGGCATTTCCTCTAACATAAGCAAACTCAAACCGCTGACTTCGAGCTCAATTATCTCGATTCCCGTGAAAGATATCAAACAGTGGTCAACTAATAAATATTGGTGATATTATGATAAGCATTCTGTTAGAGGTTCACTTGTTGATATCTTTCACACGAATCGAGATATTTGAGCTCAAATAGACTCAACTCTCAATTTAGCGCTGACTTTGATAGTTTCGTATATTTTTCGGTTCCAAAAGGAAAATCTCTTCTGTTTTATTTTTTTTACAAAAAAAATTTGCAAATCCAAACAAAAATAGAACTGAAAAAGCCGAATGTACCCGAAATTGTATTTACCGATAACATGCTAATAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTTTCGAATAATACACAGTCC</pcr_primer_p1>
		<pcr_primer_p2>TTGATATTTCTATCAAGTACGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATGTTTCGAATAATACACAGTCCGGCTCGGCTCGGTTTGTTGCAAATATGAAATATTCCTTATTTCACCTTCAGATTATTGCTCATGTCAGTTACAGAATGTCCCAATGAACCATAGATCCTCAAGATTTGAAATTTGATGTAGCCTTTAAAATGAAATAAAATTATCCTACTATAGTAGGTTACTACTAGGGTTATAGTTCGAACTTTTCCGTAAAACCAAAATTATCTTCGTACTTGATAGAAATATCAA</canonical_amplicon>
		<polymorphic_amplicon>ATGTTTCGAATAATACACAGTCCGGCTCGGCTCGGTTTGTTGCAAATATGAAATATTCCTTATTTCACCTTCAGATTATTGCTCATGTCAGTTACAGAATGTCCCAATGAACCATAGATCCTCAAGATTTGAAATTTGMTGTAGCCTTTAAAATGAAATAAAATTATCCTACTATAGTAGGTTACTACTAGGGTTATAGTTCGAACTTTTCCGTAAAACCAAAATTATCTTCGTACTTGATAGAAATATCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39281</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>530989</contig_pos>
        <strand>+</strand>
        <context>AAGTAAATGC[A/G]TACGAAGACG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTGCGTCGTTTCAAAAAGAACAAGTCGTCCGTCCCCCCGAAGTAAATGC</left_flank>
        <right_flank>TACGAAGACGACGGAAATCTCGTTGATCTTGCACATGGCTTAGAAGGTGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCAGCACTGCACCGACCTGGAAATTTTTATGAAAATCCGTTATGTATTATTCCAGCTGATAATAATTTCAGCTGATTCCAGCTGATAATTATATCCTATAGGAAGCTTTTCAGATCTTCGTGTCCTTCCAATGCTTACCTTGTGATGCGACGCACTCGCAACAGTAATTATTAGCTCGACTCATTTCCGACGCCATCTCGCTCGTCTCACGTCGTCTTCTGCGGACCGCCGCCGGCGTCGCCTCGCTCTCCGAGATATCCAATTTCGCTGTGCTAGCTGTACGTGTGGTCCCAATCGGAAATTGGGTCTAAACTGACCGCTCCTCTCCTCTTTGGTCACACAACAAATTTGTGTTGTCTTCTTCTTTTTATTTCCGTCGTCGTCGTCTTTTTTTGTTTTCGGAGCTTCTACGATCCTTAAAAACTCGTCGTCATTTCGAAAAAGTAAAGTGCGTCGTTTCAAAAAGAACAAGTCGTCCGTCCCCCCGAAGTAAATGCGTACGAAGACGACGGAAATCTCGTTGATCTTGCACATGGCTTAGAAGGTGTCAAACGAACGACTCATTAGAATGAGAGAAAAGAAGGGAGACTGAGACGACGTGCACATGAAAAAGCGACCCGAGAATTGATGGACGACGTCGTCGTTGGGAAAAGAAAGTGGGAGAAGGGTGGAAAAAAGAAGAGAAGAGCTTTAGAAGAGGTAATTGCAGGGTTCCTTGATGGTGTAAAAAAAAGAAGACGTGTCCTTTTTGAGGGATCTAGGAGAGAACATTCGGAGAAAATAAGAACGAGGTGGAGGTTTTTATAAGAAGAAGAACAAATCACAAGGAGAAGAAGAGCTTGTTATGTTTATACTCGTTGCTAGGTGATTGAAGGCATGGGTAGATTCGGATAGAAATAATAAGAACTTCTTTTTTCTGGTGCCAAAAAGGCAATCAAAACTAGTACGAATTTAATCAAAATGTAATTTAGGGAGACTTGGGAAAGATTGATGTTAAG</canonical>
            <polymorphic>TATCAGCACTGCACCGACCTGGAAATTTTTATGAAAATCCGTTATGTATTATTCCAGCTGATAATAATTTCAGCTGATTCCAGCTGATAATTATATCCTATAGGAAGCTTTTCAGATCTTCGTGTCCTTCCAATGCTTACCTTGTGATGCGACGCACTCGCAACAGTAATTATTAGCTCGACTCATTTCCGACGCCATCTCGCTCGTCTCACGTCGTCTTCTGCGGACCGCCGCCGGCGTCGCCTCGCTCTCCGAGATATCCAATTTCGCTGTGCTAGCTGTACGTGTGGTCCCAATCGGAAATTGGGTCTAAACTGACCGCTCCTCTCCTCTTTGGTCACACAACAAATTTGTGTTGTCTTCTTCTTTTTATTTCCGTCGTCGTCGTCTTTTTTTGTTTTCGGAGCTTCTACGATCCTTAAAAACTCGTCGTCATTTCGAAAAAGTAAAGTGCGTCGTTTCAAAAAGAACAAGTCGTCCGTCCCCCCGAAGTAAATGCRTACGAAGACGACGGAAATCTCGTTGATCTTGCACATGGCTTAGAAGGTGTCAAACGAACGACTCATTAGAATGAGAGAAAAGAAGGGAGACTGAGACGACGTGCACATGAAAAAGCGACCCGAGAATTGATGGACGACGTCGTCGTTGGGAAAAGAAAGTGGGAGAAGGGTGGAAAAAAGAAGAGAAGAGCTTTAGAAGAGGTAATTGCAGGGTTCCTTGATGGTGTAAAAAAAAGAAGACGTGTCCTTTTTGAGGGATCTAGGAGAGAACATTCGGAGAAAATAAGAACGAGGTGGAGGTTTTTATAAGAAGAAGAACAAATCACAAGGAGAAGAAGAGCTTGTTATGTTTATACTCGTTGCTAGGTGATTGAAGGCATGGGTAGATTCGGATAGAAATAATAAGAACTTCTTTTTTCTGGTGCCAAAAAGGCAATCAAAACTAGTACGAATTTAATCAAAATGTAATTTAGGGAGACTTGGGAAAGATTGATGTTAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>446 282 219 53</canonical_bands>
                <polymorphic_bands>665 282 53</polymorphic_bands>
            </assay>
            <assay>
                <site>CGTACG</site>
                <isoschizomers>
                    <enzyme>BsiWI</enzyme>
                    <enzyme>Pfl23II</enzyme>
                    <enzyme>PspLI</enzyme>
                    <enzyme>SplI</enzyme>
                    <enzyme>SunI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATTTGTGTTGTCTTCTTCTT</pcr_primer_p1>
		<pcr_primer_p2>AGTCTCCCTTCTTTTCTCTCAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CAAATTTGTGTTGTCTTCTTCTTTTTATTTCCGTCGTCGTCGTCTTTTTTTGTTTTCGGAGCTTCTACGATCCTTAAAAACTCGTCGTCATTTCGAAAAAGTAAAGTGCGTCGTTTCAAAAAGAACAAGTCGTCCGTCCCCCCGAAGTAAATGCGTACGAAGACGACGGAAATCTCGTTGATCTTGCACATGGCTTAGAAGGTGTCAAACGAACGACTCATTAGAATGAGAGAAAAGAAGGGAGACT</canonical_amplicon>
		<polymorphic_amplicon>CAAATTTGTGTTGTCTTCTTCTTTTTATTTCCGTCGTCGTCGTCTTTTTTTGTTTTCGGAGCTTCTACGATCCTTAAAAACTCGTCGTCATTTCGAAAAAGTAAAGTGCGTCGTTTCAAAAAGAACAAGTCGTCCGTCCCCCCGAAGTAAATGCRTACGAAGACGACGGAAATCTCGTTGATCTTGCACATGGCTTAGAAGGTGTCAAACGAACGACTCATTAGAATGAGAGAAAAGAAGGGAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39282</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>562096</contig_pos>
        <strand>+</strand>
        <context>GAGCCGTTGG[G/T]AAAAGAGGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGATATTAGTGAATACAGTGATGAAGAGAGTTCCGATGAAGAGCCGTTGG</left_flank>
        <right_flank>AAAAGAGGTTGAATATCGATTAGTGTCCGTACTTTTGGAACTCCCACTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAAATGTACTGTCTCCGTACAAGCAATTCGTAATATGAAGAGATTACGGAATGAAGAAGCCGGGCGAGAAATGTGCTGCAATTTGGCGGTTCAACGTTTTAGCCGAATTGCAAATAAATTACGCGAGACGACCCCCATCTCCGGCGGCTTCCGAACGGTGGTGCCCGCAACCTGAACCTAAACAGCCTAAACACATAAACGGCACGAGAAGTTGTGTTGTGAATTATGAGAAACAGTGGGACACACAATCCGTTCTTTTATTTTTAGACAGGGAATTTTTGAGATGAGGACATCCGAACAGGGGAGGGACAAACGAGATGATAAATCAGATGGTTGGGATTCGTAATAAATAAAAAATATCTCGTAAATCACAAAAGAAACCAAACTGACGCTGGTGATTTAGGATGAAAAGCAAAAAAAAAGGGAATATTCACAAGGGAGAATAGAGGATATTAGTGAATACAGTGATGAAGAGAGTTCCGATGAAGAGCCGTTGGGAAAAGAGGTTGAATATCGATTAGTGTCCGTACTTTTGGAACTCCCACTCACGGTTATCGAGTGGGCACACCTGAAAATCACCATTTTGAGATCTTGTAGCTTGAAATTTGCTTATTCAAGTATGGCCGATAACAGGTAAACGTGTAAATTTTAGTTTGAAATGCGTACCTGACGTGTCTTGAGCCAACGAGAGATGCAGTGGAAATGGAACGCATGATTGCAGTTACCCCAGGCAACAGTACATTCCTCCTTGAGTCCAGCAGCTTGATTTGCCTGGCACTCGATGCACAGATCCATGATGTGATTGCGGCAAATGGCGCAGTTGTCGACTTGAATGTCCCACGCCCAGAGAGCGACAGCACTCCACTTTTTGACCTGGAAATGTATTTTTATGCGATGCCCATGGAATGTCTAGTTACCTCGAAACGCTTCTTGACTGTCTGGTTCGAGACCTCCTCGACCTCCATTGCGCTGCTGTCACTTGCTTGGGCCATCTTGTA</canonical>
            <polymorphic>AGAAAATGTACTGTCTCCGTACAAGCAATTCGTAATATGAAGAGATTACGGAATGAAGAAGCCGGGCGAGAAATGTGCTGCAATTTGGCGGTTCAACGTTTTAGCCGAATTGCAAATAAATTACGCGAGACGACCCCCATCTCCGGCGGCTTCCGAACGGTGGTGCCCGCAACCTGAACCTAAACAGCCTAAACACATAAACGGCACGAGAAGTTGTGTTGTGAATTATGAGAAACAGTGGGACACACAATCCGTTCTTTTATTTTTAGACAGGGAATTTTTGAGATGAGGACATCCGAACAGGGGAGGGACAAACGAGATGATAAATCAGATGGTTGGGATTCGTAATAAATAAAAAATATCTCGTAAATCACAAAAGAAACCAAACTGACGCTGGTGATTTAGGATGAAAAGCAAAAAAAAAGGGAATATTCACAAGGGAGAATAGAGGATATTAGTGAATACAGTGATGAAGAGAGTTCCGATGAAGAGCCGTTGGKAAAAGAGGTTGAATATCGATTAGTGTCCGTACTTTTGGAACTCCCACTCACGGTTATCGAGTGGGCACACCTGAAAATCACCATTTTGAGATCTTGTAGCTTGAAATTTGCTTATTCAAGTATGGCCGATAACAGGTAAACGTGTAAATTTTAGTTTGAAATGCGTACCTGACGTGTCTTGAGCCAACGAGAGATGCAGTGGAAATGGAACGCATGATTGCAGTTACCCCAGGCAACAGTACATTCCTCCTTGAGTCCAGCAGCTTGATTTGCCTGGCACTCGATGCACAGATCCATGATGTGATTGCGGCAAATGGCGCAGTTGTCGACTTGAATGTCCCACGCCCAGAGAGCGACAGCACTCCACTTTTTGACCTGGAAATGTATTTTTATGCGATGCCCATGGAATGTCTAGTTACCTCGAAACGCTTCTTGACTGTCTGGTTCGAGACCTCCTCGACCTCCATTGCGCTGCTGTCACTTGCTTGGGCCATCTTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTCGTAAATCACAAAAGAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTCAAGCTACAAGATCTCAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATCTCGTAAATCACAAAAGAAACCAAACTGACGCTGGTGATTTAGGATGAAAAGCAAAAAAAAAGGGAATATTCACAAGGGAGAATAGAGGATATTAGTGAATACAGTGATGAAGAGAGTTCCGATGAAGAGCCGTTGGGAAAAGAGGTTGAATATCGATTAGTGTCCGTACTTTTGGAACTCCCACTCACGGTTATCGAGTGGGCACACCTGAAAATCACCATTTTGAGATCTTGTAGCTTGAA</canonical_amplicon>
		<polymorphic_amplicon>ATCTCGTAAATCACAAAAGAAACCAAACTGACGCTGGTGATTTAGGATGAAAAGCAAAAAAAAAGGGAATATTCACAAGGGAGAATAGAGGATATTAGTGAATACAGTGATGAAGAGAGTTCCGATGAAGAGCCGTTGGKAAAAGAGGTTGAATATCGATTAGTGTCCGTACTTTTGGAACTCCCACTCACGGTTATCGAGTGGGCACACCTGAAAATCACCATTTTGAGATCTTGTAGCTTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39283</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>563256</contig_pos>
        <strand>+</strand>
        <context>AGTATTTTTT[C/T]AATCTTTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGAATTTTTCAGAATTTCCACAGTCCGGCTCGGGATTCCAGTATTTTTT</left_flank>
        <right_flank>AATCTTTCAACAACAGTTAGGTGCCAAAAAAATATAAGCCAAATTTCTAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATAGAAAATAACCTTTTGAGTAAATCAGTTAAGGGGCGTGAGGAAAACCAGTTGGGCATAGAACATCGCTGAGTTCGTAGACACCTTGTGCTCCAGGGAAGGTAAAAAACGATGAAAGGAGTGTATCGATCGTTCGAGAGGAATTCAAAGCTGAATACATTCTGTGAAAGCAACGAAACAGTAATGCTAGAAGACCAGCTACTGGGAACGAGGGAATATGGTCCGAGCAATTAGAGCTGGTACACGCGATCACGTAGGGTTTTTCGCGGGCTCGCTAGGTCCGCCAATCATAGTCAATTCCAAAGTTTCGAACGTGTTACTCGAACTTTCTGAAATTCCGCTCCAAAATGGCGAGCCAAATATTTCAAAACGCAGTTGCGAAATGTATGAGGAACAACTCAAAGAAATATTTAATAAACAGTAGCTTTCAAACTTGTAACGGATCGGCCGGGAATTTTTCAGAATTTCCACAGTCCGGCTCGGGATTCCAGTATTTTTTTAATCTTTCAACAACAGTTAGGTGCCAAAAAAATATAAGCCAAATTTCTACCAAATTAAAAATTTGCAAAGAACGGAGTTTCATTGAAAAAATATTGCTTTCACAAAAAAAATAATACTTTCTGAAATTTCAGATTTTTTTCAAATTTGAAAGCCCGTGCCGGGCACCGATTTTTCAAGTATGAGTTCTTTCAGTCTAGCAGCACAATGAAGTAAGGAACTAAGTTTGAAGAATATTTCAAAGCTTTTTTCAAAAAAAGAGCAAAATTGGACTGAGGAAACATATGATGAGGAAGCTGAAAACGAGTGGCGTTCTCGTCATCAAAAAATAAATTTTTGGTGCATACATCACAACGTACGCGCAATTGCGGACACTTGAATTTTGTTTTTTTTCTTTTATTTTCCGGTCTGCTGAATTTTTTCTTTCCCTCCCGTTTCCGTCTTCTATTCATGATAAGCCTTACAGTGAAAATTCGAAAACATTAACAAGAAAACGTTCAGA</canonical>
            <polymorphic>ATAGAAAATAACCTTTTGAGTAAATCAGTTAAGGGGCGTGAGGAAAACCAGTTGGGCATAGAACATCGCTGAGTTCGTAGACACCTTGTGCTCCAGGGAAGGTAAAAAACGATGAAAGGAGTGTATCGATCGTTCGAGAGGAATTCAAAGCTGAATACATTCTGTGAAAGCAACGAAACAGTAATGCTAGAAGACCAGCTACTGGGAACGAGGGAATATGGTCCGAGCAATTAGAGCTGGTACACGCGATCACGTAGGGTTTTTCGCGGGCTCGCTAGGTCCGCCAATCATAGTCAATTCCAAAGTTTCGAACGTGTTACTCGAACTTTCTGAAATTCCGCTCCAAAATGGCGAGCCAAATATTTCAAAACGCAGTTGCGAAATGTATGAGGAACAACTCAAAGAAATATTTAATAAACAGTAGCTTTCAAACTTGTAACGGATCGGCCGGGAATTTTTCAGAATTTCCACAGTCCGGCTCGGGATTCCAGTATTTTTTYAATCTTTCAACAACAGTTAGGTGCCAAAAAAATATAAGCCAAATTTCTACCAAATTAAAAATTTGCAAAGAACGGAGTTTCATTGAAAAAATATTGCTTTCACAAAAAAAATAATACTTTCTGAAATTTCAGATTTTTTTCAAATTTGAAAGCCCGTGCCGGGCACCGATTTTTCAAGTATGAGTTCTTTCAGTCTAGCAGCACAATGAAGTAAGGAACTAAGTTTGAAGAATATTTCAAAGCTTTTTTCAAAAAAAGAGCAAAATTGGACTGAGGAAACATATGATGAGGAAGCTGAAAACGAGTGGCGTTCTCGTCATCAAAAAATAAATTTTTGGTGCATACATCACAACGTACGCGCAATTGCGGACACTTGAATTTTGTTTTTTTTCTTTTATTTTCCGGTCTGCTGAATTTTTTCTTTCCCTCCCGTTTCCGTCTTCTATTCATGATAAGCCTTACAGTGAAAATTCGAAAACATTAACAAGAAAACGTTCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>426 382 88 56 29 19</canonical_bands>
                <polymorphic_bands>426 382 144 29 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAGCCAAATATTTCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>TTCAATGAAACTCCGTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>CGAGCCAAATATTTCAAAACGCAGTTGCGAAATGTATGAGGAACAACTCAAAGAAATATTTAATAAACAGTAGCTTTCAAACTTGTAACGGATCGGCCGGGAATTTTTCAGAATTTCCACAGTCCGGCTCGGGATTCCAGTATTTTTTTAATCTTTCAACAACAGTTAGGTGCCAAAAAAATATAAGCCAAATTTCTACCAAATTAAAAATTTGCAAAGAACGGAGTTTCATTGAA</canonical_amplicon>
		<polymorphic_amplicon>CGAGCCAAATATTTCAAAACGCAGTTGCGAAATGTATGAGGAACAACTCAAAGAAATATTTAATAAACAGTAGCTTTCAAACTTGTAACGGATCGGCCGGGAATTTTTCAGAATTTCCACAGTCCGGCTCGGGATTCCAGTATTTTTTYAATCTTTCAACAACAGTTAGGTGCCAAAAAAATATAAGCCAAATTTCTACCAAATTAAAAATTTGCAAAGAACGGAGTTTCATTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39284</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>563302</contig_pos>
        <strand>+</strand>
        <context>AAGCCAAATT[C/T]CTACCAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTTAATCTTTCAACAACAGTTAGGTGCCAAAAAAATATAAGCCAAATT</left_flank>
        <right_flank>CTACCAAATTAAAAATTTGCAAAGAACGGAGTTTCATTGAAAAAATATTG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCAGTTGGGCATAGAACATCGCTGAGTTCGTAGACACCTTGTGCTCCAGGGAAGGTAAAAAACGATGAAAGGAGTGTATCGATCGTTCGAGAGGAATTCAAAGCTGAATACATTCTGTGAAAGCAACGAAACAGTAATGCTAGAAGACCAGCTACTGGGAACGAGGGAATATGGTCCGAGCAATTAGAGCTGGTACACGCGATCACGTAGGGTTTTTCGCGGGCTCGCTAGGTCCGCCAATCATAGTCAATTCCAAAGTTTCGAACGTGTTACTCGAACTTTCTGAAATTCCGCTCCAAAATGGCGAGCCAAATATTTCAAAACGCAGTTGCGAAATGTATGAGGAACAACTCAAAGAAATATTTAATAAACAGTAGCTTTCAAACTTGTAACGGATCGGCCGGGAATTTTTCAGAATTTCCACAGTCCGGCTCGGGATTCCAGTATTTTTTTAATCTTTCAACAACAGTTAGGTGCCAAAAAAATATAAGCCAAATTTCTACCAAATTAAAAATTTGCAAAGAACGGAGTTTCATTGAAAAAATATTGCTTTCACAAAAAAAATAATACTTTCTGAAATTTCAGATTTTTTTCAAATTTGAAAGCCCGTGCCGGGCACCGATTTTTCAAGTATGAGTTCTTTCAGTCTAGCAGCACAATGAAGTAAGGAACTAAGTTTGAAGAATATTTCAAAGCTTTTTTCAAAAAAAGAGCAAAATTGGACTGAGGAAACATATGATGAGGAAGCTGAAAACGAGTGGCGTTCTCGTCATCAAAAAATAAATTTTTGGTGCATACATCACAACGTACGCGCAATTGCGGACACTTGAATTTTGTTTTTTTTCTTTTATTTTCCGGTCTGCTGAATTTTTTCTTTCCCTCCCGTTTCCGTCTTCTATTCATGATAAGCCTTACAGTGAAAATTCGAAAACATTAACAAGAAAACGTTCAGACTTTATTATAAAACCGAAATTATATGTCTTGAGAGAGAAGCACCAG</canonical>
            <polymorphic>ACCAGTTGGGCATAGAACATCGCTGAGTTCGTAGACACCTTGTGCTCCAGGGAAGGTAAAAAACGATGAAAGGAGTGTATCGATCGTTCGAGAGGAATTCAAAGCTGAATACATTCTGTGAAAGCAACGAAACAGTAATGCTAGAAGACCAGCTACTGGGAACGAGGGAATATGGTCCGAGCAATTAGAGCTGGTACACGCGATCACGTAGGGTTTTTCGCGGGCTCGCTAGGTCCGCCAATCATAGTCAATTCCAAAGTTTCGAACGTGTTACTCGAACTTTCTGAAATTCCGCTCCAAAATGGCGAGCCAAATATTTCAAAACGCAGTTGCGAAATGTATGAGGAACAACTCAAAGAAATATTTAATAAACAGTAGCTTTCAAACTTGTAACGGATCGGCCGGGAATTTTTCAGAATTTCCACAGTCCGGCTCGGGATTCCAGTATTTTTTTAATCTTTCAACAACAGTTAGGTGCCAAAAAAATATAAGCCAAATTYCTACCAAATTAAAAATTTGCAAAGAACGGAGTTTCATTGAAAAAATATTGCTTTCACAAAAAAAATAATACTTTCTGAAATTTCAGATTTTTTTCAAATTTGAAAGCCCGTGCCGGGCACCGATTTTTCAAGTATGAGTTCTTTCAGTCTAGCAGCACAATGAAGTAAGGAACTAAGTTTGAAGAATATTTCAAAGCTTTTTTCAAAAAAAGAGCAAAATTGGACTGAGGAAACATATGATGAGGAAGCTGAAAACGAGTGGCGTTCTCGTCATCAAAAAATAAATTTTTGGTGCATACATCACAACGTACGCGCAATTGCGGACACTTGAATTTTGTTTTTTTTCTTTTATTTTCCGGTCTGCTGAATTTTTTCTTTCCCTCCCGTTTCCGTCTTCTATTCATGATAAGCCTTACAGTGAAAATTCGAAAACATTAACAAGAAAACGTTCAGACTTTATTATAAAACCGAAATTATATGTCTTGAGAGAGAAGCACCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>192 187 119 95 79 78 65 56 47 36 18 18 10</canonical_bands>
                <polymorphic_bands>192 187 119 97 95 78 65 56 47 36 18 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAATTTTTCAGAATTTCCACAG</pcr_primer_p1>
		<pcr_primer_p2>CTGCTAGACTGAAAGAACTCATAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAATTTTTCAGAATTTCCACAGTCCGGCTCGGGATTCCAGTATTTTTTTAATCTTTCAACAACAGTTAGGTGCCAAAAAAATATAAGCCAAATTTCTACCAAATTAAAAATTTGCAAAGAACGGAGTTTCATTGAAAAAATATTGCTTTCACAAAAAAAATAATACTTTCTGAAATTTCAGATTTTTTTCAAATTTGAAAGCCCGTGCCGGGCACCGATTTTTCAAGTATGAGTTCTTTCAGTCTAGCAG</canonical_amplicon>
		<polymorphic_amplicon>GAATTTTTCAGAATTTCCACAGTCCGGCTCGGGATTCCAGTATTTTTTTAATCTTTCAACAACAGTTAGGTGCCAAAAAAATATAAGCCAAATTYCTACCAAATTAAAAATTTGCAAAGAACGGAGTTTCATTGAAAAAATATTGCTTTCACAAAAAAAATAATACTTTCTGAAATTTCAGATTTTTTTCAAATTTGAAAGCCCGTGCCGGGCACCGATTTTTCAAGTATGAGTTCTTTCAGTCTAGCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39285</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>563635</contig_pos>
        <strand>+</strand>
        <context>GACACTTGAA[C/T]TTTGTTTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTTTTGGTGCATACATCACAACGTACGCGCAATTGCGGACACTTGAA</left_flank>
        <right_flank>TTTGTTTTTTTTCTTTTATTTTCCGGTCTGCTGAATTTTTTCTTTCCCTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAATGTATGAGGAACAACTCAAAGAAATATTTAATAAACAGTAGCTTTCAAACTTGTAACGGATCGGCCGGGAATTTTTCAGAATTTCCACAGTCCGGCTCGGGATTCCAGTATTTTTTTAATCTTTCAACAACAGTTAGGTGCCAAAAAAATATAAGCCAAATTTCTACCAAATTAAAAATTTGCAAAGAACGGAGTTTCATTGAAAAAATATTGCTTTCACAAAAAAAATAATACTTTCTGAAATTTCAGATTTTTTTCAAATTTGAAAGCCCGTGCCGGGCACCGATTTTTCAAGTATGAGTTCTTTCAGTCTAGCAGCACAATGAAGTAAGGAACTAAGTTTGAAGAATATTTCAAAGCTTTTTTCAAAAAAAGAGCAAAATTGGACTGAGGAAACATATGATGAGGAAGCTGAAAACGAGTGGCGTTCTCGTCATCAAAAAATAAATTTTTGGTGCATACATCACAACGTACGCGCAATTGCGGACACTTGAATTTTGTTTTTTTTCTTTTATTTTCCGGTCTGCTGAATTTTTTCTTTCCCTCCCGTTTCCGTCTTCTATTCATGATAAGCCTTACAGTGAAAATTCGAAAACATTAACAAGAAAACGTTCAGACTTTATTATAAAACCGAAATTATATGTCTTGAGAGAGAAGCACCAGTATGAAGAAAGCAACACGCTATCAGAAAAGAATAATTGAATTTATCAGTCGGCATCAGTGTATCCTATCCTCTTCTTTTTCCGTTCCGGAAAGCATTTTTCGGTGACTTCTCTCAATTTTTGTCCCAAACTCTTGCGGTAGTCAATGACCATCGTTTCATCTATGCTTCCATCTTCCTGCTCATGGTGACTTCTAATGTGCTTGATTACATCTGATTTAGCAATAGTCTGCCATTTACGATGGCAGATTCCACACTCGTAGAGCTCATACTTTCCATGGCGCGTGTTGGCATGATAGACCATACTTGATCGTTGCTTTGAGACCACATCTCCG</canonical>
            <polymorphic>GAAATGTATGAGGAACAACTCAAAGAAATATTTAATAAACAGTAGCTTTCAAACTTGTAACGGATCGGCCGGGAATTTTTCAGAATTTCCACAGTCCGGCTCGGGATTCCAGTATTTTTTTAATCTTTCAACAACAGTTAGGTGCCAAAAAAATATAAGCCAAATTTCTACCAAATTAAAAATTTGCAAAGAACGGAGTTTCATTGAAAAAATATTGCTTTCACAAAAAAAATAATACTTTCTGAAATTTCAGATTTTTTTCAAATTTGAAAGCCCGTGCCGGGCACCGATTTTTCAAGTATGAGTTCTTTCAGTCTAGCAGCACAATGAAGTAAGGAACTAAGTTTGAAGAATATTTCAAAGCTTTTTTCAAAAAAAGAGCAAAATTGGACTGAGGAAACATATGATGAGGAAGCTGAAAACGAGTGGCGTTCTCGTCATCAAAAAATAAATTTTTGGTGCATACATCACAACGTACGCGCAATTGCGGACACTTGAAYTTTGTTTTTTTTCTTTTATTTTCCGGTCTGCTGAATTTTTTCTTTCCCTCCCGTTTCCGTCTTCTATTCATGATAAGCCTTACAGTGAAAATTCGAAAACATTAACAAGAAAACGTTCAGACTTTATTATAAAACCGAAATTATATGTCTTGAGAGAGAAGCACCAGTATGAAGAAAGCAACACGCTATCAGAAAAGAATAATTGAATTTATCAGTCGGCATCAGTGTATCCTATCCTCTTCTTTTTCCGTTCCGGAAAGCATTTTTCGGTGACTTCTCTCAATTTTTGTCCCAAACTCTTGCGGTAGTCAATGACCATCGTTTCATCTATGCTTCCATCTTCCTGCTCATGGTGACTTCTAATGTGCTTGATTACATCTGATTTAGCAATAGTCTGCCATTTACGATGGCAGATTCCACACTCGTAGAGCTCATACTTTCCATGGCGCGTGTTGGCATGATAGACCATACTTGATCGTTGCTTTGAGACCACATCTCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>295 187 116 79 73 65 56 47 36 18 18 10</canonical_bands>
                <polymorphic_bands>295 187 116 83 79 73 65 56 18 18 10</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>219 121 79 76 73 66 65 62 56 49 36 32 18 15 11 10 7 5</canonical_bands>
                <polymorphic_bands>219 121 79 76 73 66 65 62 56 51 49 32 18 11 10 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCACAATGAAGTAAGGAACTAAG</pcr_primer_p1>
		<pcr_primer_p2>TATCATGAATAGAAGACGGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GCACAATGAAGTAAGGAACTAAGTTTGAAGAATATTTCAAAGCTTTTTTCAAAAAAAGAGCAAAATTGGACTGAGGAAACATATGATGAGGAAGCTGAAAACGAGTGGCGTTCTCGTCATCAAAAAATAAATTTTTGGTGCATACATCACAACGTACGCGCAATTGCGGACACTTGAATTTTGTTTTTTTTCTTTTATTTTCCGGTCTGCTGAATTTTTTCTTTCCCTCCCGTTTCCGTCTTCTATTCATGATA</canonical_amplicon>
		<polymorphic_amplicon>GCACAATGAAGTAAGGAACTAAGTTTGAAGAATATTTCAAAGCTTTTTTCAAAAAAAGAGCAAAATTGGACTGAGGAAACATATGATGAGGAAGCTGAAAACGAGTGGCGTTCTCGTCATCAAAAAATAAATTTTTGGTGCATACATCACAACGTACGCGCAATTGCGGACACTTGAAYTTTGTTTTTTTTCTTTTATTTTCCGGTCTGCTGAATTTTTTCTTTCCCTCCCGTTTCCGTCTTCTATTCATGATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39286</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>563667</contig_pos>
        <strand></strand>
        <context>TCCGGTCTGC[T/C]GAATTTYTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CAATTGCGGACACTTGAATTTTGTTTTTTTTCTTTTATTTTCCGGTCTGC</left_flank>
        <right_flank>GAATTTTTTCTTTCCCTCCCGTTTCCGTCTTCTATTCATGATAAGCCTTA</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATAAACAGTAGCTTTCAAACTTGTAACGGATCGGCCGGGAATTTTTCAGAATTTCCACAGTCCGGCTCGGGATTCCAGTATTTTTTTAATCTTTCAACAACAGTTAGGTGCCAAAAAAATATAAGCCAAATTTCTACCAAATTAAAAATTTGCAAAGAACGGAGTTTCATTGAAAAAATATTGCTTTCACAAAAAAAATAATACTTTCTGAAATTTCAGATTTTTTTCAAATTTGAAAGCCCGTGCCGGGCACCGATTTTTCAAGTATGAGTTCTTTCAGTCTAGCAGCACAATGAAGTAAGGAACTAAGTTTGAAGAATATTTCAAAGCTTTTTTCAAAAAAAGAGCAAAATTGGACTGAGGAAACATATGATGAGGAAGCTGAAAACGAGTGGCGTTCTCGTCATCAAAAAATAAATTTTTGGTGCATACATCACAACGTACGCGCAATTGCGGACACTTGAATTTTGTTTTTTTTCTTTTATTTTCCGGTCTGCTGAATTTTTTCTTTCCCTCCCGTTTCCGTCTTCTATTCATGATAAGCCTTACAGTGAAAATTCGAAAACATTAACAAGAAAACGTTCAGACTTTATTATAAAACCGAAATTATATGTCTTGAGAGAGAAGCACCAGTATGAAGAAAGCAACACGCTATCAGAAAAGAATAATTGAATTTATCAGTCGGCATCAGTGTATCCTATCCTCTTCTTTTTCCGTTCCGGAAAGCATTTTTCGGTGACTTCTCTCAATTTTTGTCCCAAACTCTTGCGGTAGTCAATGACCATCGTTTCATCTATGCTTCCATCTTCCTGCTCATGGTGACTTCTAATGTGCTTGATTACATCTGATTTAGCAATAGTCTGCCATTTACGATGGCAGATTCCACACTCGTAGAGCTCATACTTTCCATGGCGCGTGTTGGCATGATAGACCATACTTGATCGTTGCTTTGAGACCACATCTCCGCACATCGTGCATCGTATCTGCTGCTTCGGCTT</canonical>
            <polymorphic>TAATAAACAGTAGCTTTCAAACTTGTAACGGATCGGCCGGGAATTTTTCAGAATTTCCACAGTCCGGCTCGGGATTCCAGTATTTTTTTAATCTTTCAACAACAGTTAGGTGCCAAAAAAATATAAGCCAAATTTCTACCAAATTAAAAATTTGCAAAGAACGGAGTTTCATTGAAAAAATATTGCTTTCACAAAAAAAATAATACTTTCTGAAATTTCAGATTTTTTTCAAATTTGAAAGCCCGTGCCGGGCACCGATTTTTCAAGTATGAGTTCTTTCAGTCTAGCAGCACAATGAAGTAAGGAACTAAGTTTGAAGAATATTTCAAAGCTTTTTTCAAAAAAAGAGCAAAATTGGACTGAGGAAACATATGATGAGGAAGCTGAAAACGAGTGGCGTTCTCGTCATCAAAAAATAAATTTTTGGTGCATACATCACAACGTACGCGCAATTGCGGACACTTGAATTTTGTTTTTTTTCTTTTATTTTCCGGTCTGCYGAATTTTTTCTTTCCCTCCCGTTTCCGTCTTCTATTCATGATAAGCCTTACAGTGAAAATTCGAAAACATTAACAAGAAAACGTTCAGACTTTATTATAAAACCGAAATTATATGTCTTGAGAGAGAAGCACCAGTATGAAGAAAGCAACACGCTATCAGAAAAGAATAATTGAATTTATCAGTCGGCATCAGTGTATCCTATCCTCTTCTTTTTCCGTTCCGGAAAGCATTTTTCGGTGACTTCTCTCAATTTTTGTCCCAAACTCTTGCGGTAGTCAATGACCATCGTTTCATCTATGCTTCCATCTTCCTGCTCATGGTGACTTCTAATGTGCTTGATTACATCTGATTTAGCAATAGTCTGCCATTTACGATGGCAGATTCCACACTCGTAGAGCTCATACTTTCCATGGCGCGTGTTGGCATGATAGACCATACTTGATCGTTGCTTTGAGACCACATCTCCGCACATCGTGCATCGTATCTGCTGCTTCGGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTGGACTGAGGAAACATA</pcr_primer_p1>
		<pcr_primer_p2>TAAAGTCTGAACGTTTTCTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAAATTGGACTGAGGAAACATATGATGAGGAAGCTGAAAACGAGTGGCGTTCTCGTCATCAAAAAATAAATTTTTGGTGCATACATCACAACGTACGCGCAATTGCGGACACTTGAATTTTGTTTTTTTTCTTTTATTTTCCGGTCTGCTGAATTTTTTCTTTCCCTCCCGTTTCCGTCTTCTATTCATGATAAGCCTTACAGTGAAAATTCGAAAACATTAACAAGAAAACGTTCAGACTTTA</canonical_amplicon>
		<polymorphic_amplicon>AAAATTGGACTGAGGAAACATATGATGAGGAAGCTGAAAACGAGTGGCGTTCTCGTCATCAAAAAATAAATTTTTGGTGCATACATCACAACGTACGCGCAATTGCGGACACTTGAATTTTGTTTTTTTTCTTTTATTTTCCGGTCTGCYGAATTTTTTCTTTCCCTCCCGTTTCCGTCTTCTATTCATGATAAGCCTTACAGTGAAAATTCGAAAACATTAACAAGAAAACGTTCAGACTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39287</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>563674</contig_pos>
        <strand>+</strand>
        <context>TGCYGAATTT[C/T]TTCTTTCCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGACACTTGAATTTTGTTTTTTTTCTTTTATTTTCCGGTCTGCTGAATTT</left_flank>
        <right_flank>TTCTTTCCCTCCCGTTTCCGTCTTCTATTCATGATAAGCCTTACAGTGAA</right_flank>
        <qual_score>132</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTAGCTTTCAAACTTGTAACGGATCGGCCGGGAATTTTTCAGAATTTCCACAGTCCGGCTCGGGATTCCAGTATTTTTTTAATCTTTCAACAACAGTTAGGTGCCAAAAAAATATAAGCCAAATTTCTACCAAATTAAAAATTTGCAAAGAACGGAGTTTCATTGAAAAAATATTGCTTTCACAAAAAAAATAATACTTTCTGAAATTTCAGATTTTTTTCAAATTTGAAAGCCCGTGCCGGGCACCGATTTTTCAAGTATGAGTTCTTTCAGTCTAGCAGCACAATGAAGTAAGGAACTAAGTTTGAAGAATATTTCAAAGCTTTTTTCAAAAAAAGAGCAAAATTGGACTGAGGAAACATATGATGAGGAAGCTGAAAACGAGTGGCGTTCTCGTCATCAAAAAATAAATTTTTGGTGCATACATCACAACGTACGCGCAATTGCGGACACTTGAATTTTGTTTTTTTTCTTTTATTTTCCGGTCTGCTGAATTTTTTCTTTCCCTCCCGTTTCCGTCTTCTATTCATGATAAGCCTTACAGTGAAAATTCGAAAACATTAACAAGAAAACGTTCAGACTTTATTATAAAACCGAAATTATATGTCTTGAGAGAGAAGCACCAGTATGAAGAAAGCAACACGCTATCAGAAAAGAATAATTGAATTTATCAGTCGGCATCAGTGTATCCTATCCTCTTCTTTTTCCGTTCCGGAAAGCATTTTTCGGTGACTTCTCTCAATTTTTGTCCCAAACTCTTGCGGTAGTCAATGACCATCGTTTCATCTATGCTTCCATCTTCCTGCTCATGGTGACTTCTAATGTGCTTGATTACATCTGATTTAGCAATAGTCTGCCATTTACGATGGCAGATTCCACACTCGTAGAGCTCATACTTTCCATGGCGCGTGTTGGCATGATAGACCATACTTGATCGTTGCTTTGAGACCACATCTCCGCACATCGTGCATCGTATCTGCTGCTTCGGCTTCACAGGT</canonical>
            <polymorphic>CAGTAGCTTTCAAACTTGTAACGGATCGGCCGGGAATTTTTCAGAATTTCCACAGTCCGGCTCGGGATTCCAGTATTTTTTTAATCTTTCAACAACAGTTAGGTGCCAAAAAAATATAAGCCAAATTTCTACCAAATTAAAAATTTGCAAAGAACGGAGTTTCATTGAAAAAATATTGCTTTCACAAAAAAAATAATACTTTCTGAAATTTCAGATTTTTTTCAAATTTGAAAGCCCGTGCCGGGCACCGATTTTTCAAGTATGAGTTCTTTCAGTCTAGCAGCACAATGAAGTAAGGAACTAAGTTTGAAGAATATTTCAAAGCTTTTTTCAAAAAAAGAGCAAAATTGGACTGAGGAAACATATGATGAGGAAGCTGAAAACGAGTGGCGTTCTCGTCATCAAAAAATAAATTTTTGGTGCATACATCACAACGTACGCGCAATTGCGGACACTTGAATTTTGTTTTTTTTCTTTTATTTTCCGGTCTGCTGAATTTYTTCTTTCCCTCCCGTTTCCGTCTTCTATTCATGATAAGCCTTACAGTGAAAATTCGAAAACATTAACAAGAAAACGTTCAGACTTTATTATAAAACCGAAATTATATGTCTTGAGAGAGAAGCACCAGTATGAAGAAAGCAACACGCTATCAGAAAAGAATAATTGAATTTATCAGTCGGCATCAGTGTATCCTATCCTCTTCTTTTTCCGTTCCGGAAAGCATTTTTCGGTGACTTCTCTCAATTTTTGTCCCAAACTCTTGCGGTAGTCAATGACCATCGTTTCATCTATGCTTCCATCTTCCTGCTCATGGTGACTTCTAATGTGCTTGATTACATCTGATTTAGCAATAGTCTGCCATTTACGATGGCAGATTCCACACTCGTAGAGCTCATACTTTCCATGGCGCGTGTTGGCATGATAGACCATACTTGATCGTTGCTTTGAGACCACATCTCCGCACATCGTGCATCGTATCTGCTGCTTCGGCTTCACAGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTGGACTGAGGAAACATA</pcr_primer_p1>
		<pcr_primer_p2>TAAAGTCTGAACGTTTTCTTGTT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AAAATTGGACTGAGGAAACATATGATGAGGAAGCTGAAAACGAGTGGCGTTCTCGTCATCAAAAAATAAATTTTTGGTGCATACATCACAACGTACGCGCAATTGCGGACACTTGAATTTTGTTTTTTTTCTTTTATTTTCCGGTCTGCTGAATTTTTTCTTTCCCTCCCGTTTCCGTCTTCTATTCATGATAAGCCTTACAGTGAAAATTCGAAAACATTAACAAGAAAACGTTCAGACTTTA</canonical_amplicon>
		<polymorphic_amplicon>AAAATTGGACTGAGGAAACATATGATGAGGAAGCTGAAAACGAGTGGCGTTCTCGTCATCAAAAAATAAATTTTTGGTGCATACATCACAACGTACGCGCAATTGCGGACACTTGAATTTTGTTTTTTTTCTTTTATTTTCCGGTCTGCTGAATTTYTTCTTTCCCTCCCGTTTCCGTCTTCTATTCATGATAAGCCTTACAGTGAAAATTCGAAAACATTAACAAGAAAACGTTCAGACTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39288</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>564201</contig_pos>
        <strand>+</strand>
        <context>TCGATAGACM[A/C]GMMCTTTCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATCTGCTGCTTCGGCTTCACAGGTCCACCACCGTCCCCATTCGATAGACC</left_flank>
        <right_flank>GCTCTTTCTTCCTCGTGTCGCGATAGAGTCTCATCTAAAATGGGCTGATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCATGATAAGCCTTACAGTGAAAATTCGAAAACATTAACAAGAAAACGTTCAGACTTTATTATAAAACCGAAATTATATGTCTTGAGAGAGAAGCACCAGTATGAAGAAAGCAACACGCTATCAGAAAAGAATAATTGAATTTATCAGTCGGCATCAGTGTATCCTATCCTCTTCTTTTTCCGTTCCGGAAAGCATTTTTCGGTGACTTCTCTCAATTTTTGTCCCAAACTCTTGCGGTAGTCAATGACCATCGTTTCATCTATGCTTCCATCTTCCTGCTCATGGTGACTTCTAATGTGCTTGATTACATCTGATTTAGCAATAGTCTGCCATTTACGATGGCAGATTCCACACTCGTAGAGCTCATACTTTCCATGGCGCGTGTTGGCATGATAGACCATACTTGATCGTTGCTTTGAGACCACATCTCCGCACATCGTGCATCGTATCTGCTGCTTCGGCTTCACAGGTCCACCACCGTCCCCATTCGATAGACCAGCTCTTTCTTCCTCGTGTCGCGATAGAGTCTCATCTAAAATGGGCTGATAAGTGTTGTTCTAAGCATAATGGTTTACCTAAAAAGTTGTGATACTGTTGCATTTGTGAATTGTCTGCATAGATCATAGGGCTCTGAATCTGCATTCCATTCATCTCCGGTGATTCTAATTTCACCCGTCCTTCCATGGTACTCGAAACGGTGTCTTGAATTCTTCCATCACTCAGTGGAGAACTAATCATACCGATACATGCCTGCATCTTTTGTGCTAATTCCTTCTTCTTCATAGCGAATTCGTCAGTGTATCGATACTTGATCTGAAATCAGGAACCCTTTTGTCAATCCATTCATCCCATGTTTTCATAACTTACGAAGAACTCGGAAGCTCCATGATCTACTCGACAGTGTGTGACAAGAGCGTATTCGGTTGGAAACTTGGCAAACTTGCATTTCTCGCATCTGAGAGATTATCAGTTTACCACTAGTTGAAATTGGGAAGACA</canonical>
            <polymorphic>TTCATGATAAGCCTTACAGTGAAAATTCGAAAACATTAACAAGAAAACGTTCAGACTTTATTATAAAACCGAAATTATATGTCTTGAGAGAGAAGCACCAGTATGAAGAAAGCAACACGCTATCAGAAAAGAATAATTGAATTTATCAGTCGGCATCAGTGTATCCTATCCTCTTCTTTTTCCGTTCCGGAAAGCATTTTTCGGTGACTTCTCTCAATTTTTGTCCCAAACTCTTGCGGTAGTCAATGACCATCGTTTCATCTATGCTTCCATCTTCCTGCTCATGGTGACTTCTAATGTGCTTGATTACATCTGATTTAGCAATAGTCTGCCATTTACGATGGCAGATTCCACACTCGTAGAGCTCATACTTTCCATGGCGCGTGTTGGCATGATAGACCATACTTGATCGTTGCTTTGAGACCACATCTCCGCACATCGTGCATCGTATCTGCTGCTTCGGCTTCACAGGTCCACCACCGTCCCCATTCGATAGACCMGCTCTTTCTTCCTCGTGTCGCGATAGAGTCTCATCTAAAATGGGCTGATAAGTGTTGTTCTAAGCATAATGGTTTACCTAAAAAGTTGTGATACTGTTGCATTTGTGAATTGTCTGCATAGATCATAGGGCTCTGAATCTGCATTCCATTCATCTCCGGTGATTCTAATTTCACCCGTCCTTCCATGGTACTCGAAACGGTGTCTTGAATTCTTCCATCACTCAGTGGAGAACTAATCATACCGATACATGCCTGCATCTTTTGTGCTAATTCCTTCTTCTTCATAGCGAATTCGTCAGTGTATCGATACTTGATCTGAAATCAGGAACCCTTTTGTCAATCCATTCATCCCATGTTTTCATAACTTACGAAGAACTCGGAAGCTCCATGATCTACTCGACAGTGTGTGACAAGAGCGTATTCGGTTGGAAACTTGGCAAACTTGCATTTCTCGCATCTGAGAGATTATCAGTTTACCACTAGTTGAAATTGGGAAGACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>382 364 137 117</canonical_bands>
                <polymorphic_bands>519 364 117</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>353 253 117 99 86 43 38 11</canonical_bands>
                <polymorphic_bands>353 253 117 99 86 81 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACACTCGTAGAGCTCATACTTT</pcr_primer_p1>
		<pcr_primer_p2>TGCAACAGTATCACAACTTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACACTCGTAGAGCTCATACTTTCCATGGCGCGTGTTGGCATGATAGACCATACTTGATCGTTGCTTTGAGACCACATCTCCGCACATCGTGCATCGTATCTGCTGCTTCGGCTTCACAGGTCCACCACCGTCCCCATTCGATAGACCAGCTCTTTCTTCCTCGTGTCGCGATAGAGTCTCATCTAAAATGGGCTGATAAGTGTTGTTCTAAGCATAATGGTTTACCTAAAAAGTTGTGATACTGTTGCA</canonical_amplicon>
		<polymorphic_amplicon>CACACTCGTAGAGCTCATACTTTCCATGGCGCGTGTTGGCATGATAGACCATACTTGATCGTTGCTTTGAGACCACATCTCCGCACATCGTGCATCGTATCTGCTGCTTCGGCTTCACAGGTCCACCACCGTCCCCATTCGATAGACCMGCTCTTTCTTCCTCGTGTCGCGATAGAGTCTCATCTAAAATGGGCTGATAAGTGTTGTTCTAAGCATAATGGTTTACCTAAAAAGTTGTGATACTGTTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39289</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>564204</contig_pos>
        <strand>+</strand>
        <context>ATAGACMMGM[A/C]CTTTCTTCCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGCTGCTTCGGCTTCACAGGTCCACCACCGTCCCCATTCGATAGACCAGC</left_flank>
        <right_flank>CTTTCTTCCTCGTGTCGCGATAGAGTCTCATCTAAAATGGGCTGATAAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGATAAGCCTTACAGTGAAAATTCGAAAACATTAACAAGAAAACGTTCAGACTTTATTATAAAACCGAAATTATATGTCTTGAGAGAGAAGCACCAGTATGAAGAAAGCAACACGCTATCAGAAAAGAATAATTGAATTTATCAGTCGGCATCAGTGTATCCTATCCTCTTCTTTTTCCGTTCCGGAAAGCATTTTTCGGTGACTTCTCTCAATTTTTGTCCCAAACTCTTGCGGTAGTCAATGACCATCGTTTCATCTATGCTTCCATCTTCCTGCTCATGGTGACTTCTAATGTGCTTGATTACATCTGATTTAGCAATAGTCTGCCATTTACGATGGCAGATTCCACACTCGTAGAGCTCATACTTTCCATGGCGCGTGTTGGCATGATAGACCATACTTGATCGTTGCTTTGAGACCACATCTCCGCACATCGTGCATCGTATCTGCTGCTTCGGCTTCACAGGTCCACCACCGTCCCCATTCGATAGACCAGCTCTTTCTTCCTCGTGTCGCGATAGAGTCTCATCTAAAATGGGCTGATAAGTGTTGTTCTAAGCATAATGGTTTACCTAAAAAGTTGTGATACTGTTGCATTTGTGAATTGTCTGCATAGATCATAGGGCTCTGAATCTGCATTCCATTCATCTCCGGTGATTCTAATTTCACCCGTCCTTCCATGGTACTCGAAACGGTGTCTTGAATTCTTCCATCACTCAGTGGAGAACTAATCATACCGATACATGCCTGCATCTTTTGTGCTAATTCCTTCTTCTTCATAGCGAATTCGTCAGTGTATCGATACTTGATCTGAAATCAGGAACCCTTTTGTCAATCCATTCATCCCATGTTTTCATAACTTACGAAGAACTCGGAAGCTCCATGATCTACTCGACAGTGTGTGACAAGAGCGTATTCGGTTGGAAACTTGGCAAACTTGCATTTCTCGCATCTGAGAGATTATCAGTTTACCACTAGTTGAAATTGGGAAGACACTT</canonical>
            <polymorphic>ATGATAAGCCTTACAGTGAAAATTCGAAAACATTAACAAGAAAACGTTCAGACTTTATTATAAAACCGAAATTATATGTCTTGAGAGAGAAGCACCAGTATGAAGAAAGCAACACGCTATCAGAAAAGAATAATTGAATTTATCAGTCGGCATCAGTGTATCCTATCCTCTTCTTTTTCCGTTCCGGAAAGCATTTTTCGGTGACTTCTCTCAATTTTTGTCCCAAACTCTTGCGGTAGTCAATGACCATCGTTTCATCTATGCTTCCATCTTCCTGCTCATGGTGACTTCTAATGTGCTTGATTACATCTGATTTAGCAATAGTCTGCCATTTACGATGGCAGATTCCACACTCGTAGAGCTCATACTTTCCATGGCGCGTGTTGGCATGATAGACCATACTTGATCGTTGCTTTGAGACCACATCTCCGCACATCGTGCATCGTATCTGCTGCTTCGGCTTCACAGGTCCACCACCGTCCCCATTCGATAGACCAGCMCTTTCTTCCTCGTGTCGCGATAGAGTCTCATCTAAAATGGGCTGATAAGTGTTGTTCTAAGCATAATGGTTTACCTAAAAAGTTGTGATACTGTTGCATTTGTGAATTGTCTGCATAGATCATAGGGCTCTGAATCTGCATTCCATTCATCTCCGGTGATTCTAATTTCACCCGTCCTTCCATGGTACTCGAAACGGTGTCTTGAATTCTTCCATCACTCAGTGGAGAACTAATCATACCGATACATGCCTGCATCTTTTGTGCTAATTCCTTCTTCTTCATAGCGAATTCGTCAGTGTATCGATACTTGATCTGAAATCAGGAACCCTTTTGTCAATCCATTCATCCCATGTTTTCATAACTTACGAAGAACTCGGAAGCTCCATGATCTACTCGACAGTGTGTGACAAGAGCGTATTCGGTTGGAAACTTGGCAAACTTGCATTTCTCGCATCTGAGAGATTATCAGTTTACCACTAGTTGAAATTGGGAAGACACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>382 361 137 120</canonical_bands>
                <polymorphic_bands>519 361 120</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>353 253 120 99 86 43 38 8</canonical_bands>
                <polymorphic_bands>353 253 120 99 86 81 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACACTCGTAGAGCTCATACTTT</pcr_primer_p1>
		<pcr_primer_p2>TGCAACAGTATCACAACTTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CACACTCGTAGAGCTCATACTTTCCATGGCGCGTGTTGGCATGATAGACCATACTTGATCGTTGCTTTGAGACCACATCTCCGCACATCGTGCATCGTATCTGCTGCTTCGGCTTCACAGGTCCACCACCGTCCCCATTCGATAGACCAGCTCTTTCTTCCTCGTGTCGCGATAGAGTCTCATCTAAAATGGGCTGATAAGTGTTGTTCTAAGCATAATGGTTTACCTAAAAAGTTGTGATACTGTTGCA</canonical_amplicon>
		<polymorphic_amplicon>CACACTCGTAGAGCTCATACTTTCCATGGCGCGTGTTGGCATGATAGACCATACTTGATCGTTGCTTTGAGACCACATCTCCGCACATCGTGCATCGTATCTGCTGCTTCGGCTTCACAGGTCCACCACCGTCCCCATTCGATAGACCAGCMCTTTCTTCCTCGTGTCGCGATAGAGTCTCATCTAAAATGGGCTGATAAGTGTTGTTCTAAGCATAATGGTTTACCTAAAAAGTTGTGATACTGTTGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39290</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>564634</contig_pos>
        <strand></strand>
        <context>CGGTTGGAAA[C/A]TTGGCAAACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GCTCCATGATCTACTCGACAGTGTGTGACAAGAGCGTATTCGGTTGGAAA</left_flank>
        <right_flank>TTGGCAAACTTGCATTTCTCGCATCTGAGAGATTATCAGTTTACCACTAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCACATCGTGCATCGTATCTGCTGCTTCGGCTTCACAGGTCCACCACCGTCCCCATTCGATAGACCAGCTCTTTCTTCCTCGTGTCGCGATAGAGTCTCATCTAAAATGGGCTGATAAGTGTTGTTCTAAGCATAATGGTTTACCTAAAAAGTTGTGATACTGTTGCATTTGTGAATTGTCTGCATAGATCATAGGGCTCTGAATCTGCATTCCATTCATCTCCGGTGATTCTAATTTCACCCGTCCTTCCATGGTACTCGAAACGGTGTCTTGAATTCTTCCATCACTCAGTGGAGAACTAATCATACCGATACATGCCTGCATCTTTTGTGCTAATTCCTTCTTCTTCATAGCGAATTCGTCAGTGTATCGATACTTGATCTGAAATCAGGAACCCTTTTGTCAATCCATTCATCCCATGTTTTCATAACTTACGAAGAACTCGGAAGCTCCATGATCTACTCGACAGTGTGTGACAAGAGCGTATTCGGTTGGAAACTTGGCAAACTTGCATTTCTCGCATCTGAGAGATTATCAGTTTACCACTAGTTGAAATTGGGAAGACACTTACTCGTATGGGAAGATGTTGAGATGATTTGAAGCGATGTGAGCTTCTAGATCATCTTTAGTGTAAGCTTCAGACTGAGGGCATTGGACGCATAGGAAAACGCGGTTATCCATTTGGAAAATGGTTGGCTGAAATTGTTTCAAATGACTCTGGTAGAAAAATCGGTTTTGGAAGCAATTTTTTTTGAAAAGAAGGAGGACGGGTGGCGAGAAGAAGGAAGGAAAATAAGGAGAAAGAGTGGGGTATGCAAGCCGTGTGTGTCTGTTGGAGGAAGGCCAGCGGGCGGGCAACGACCGCTCTCTTCCTCCTTTCTCCTTTCTTCTCTTTTTTCTTTTTTCTTCTCCTCTTTGCGATTCGCTTCGCGATCCAATAGAATCGGCGTGGAGAGGAGAGAAGAAAAAGAGAGAAAACAAGAATGCGGTCGTCCCCCT</canonical>
            <polymorphic>GCACATCGTGCATCGTATCTGCTGCTTCGGCTTCACAGGTCCACCACCGTCCCCATTCGATAGACCAGCTCTTTCTTCCTCGTGTCGCGATAGAGTCTCATCTAAAATGGGCTGATAAGTGTTGTTCTAAGCATAATGGTTTACCTAAAAAGTTGTGATACTGTTGCATTTGTGAATTGTCTGCATAGATCATAGGGCTCTGAATCTGCATTCCATTCATCTCCGGTGATTCTAATTTCACCCGTCCTTCCATGGTACTCGAAACGGTGTCTTGAATTCTTCCATCACTCAGTGGAGAACTAATCATACCGATACATGCCTGCATCTTTTGTGCTAATTCCTTCTTCTTCATAGCGAATTCGTCAGTGTATCGATACTTGATCTGAAATCAGGAACCCTTTTGTCAATCCATTCATCCCATGTTTTCATAACTTACGAAGAACTCGGAAGCTCCATGATCTACTCGACAGTGTGTGACAAGAGCGTATTCGGTTGGAAAMTTGGCAAACTTGCATTTCTCGCATCTGAGAGATTATCAGTTTACCACTAGTTGAAATTGGGAAGACACTTACTCGTATGGGAAGATGTTGAGATGATTTGAAGCGATGTGAGCTTCTAGATCATCTTTAGTGTAAGCTTCAGACTGAGGGCATTGGACGCATAGGAAAACGCGGTTATCCATTTGGAAAATGGTTGGCTGAAATTGTTTCAAATGACTCTGGTAGAAAAATCGGTTTTGGAAGCAATTTTTTTTGAAAAGAAGGAGGACGGGTGGCGAGAAGAAGGAAGGAAAATAAGGAGAAAGAGTGGGGTATGCAAGCCGTGTGTGTCTGTTGGAGGAAGGCCAGCGGGCGGGCAACGACCGCTCTCTTCCTCCTTTCTCCTTTCTTCTCTTTTTTCTTTTTTCTTCTCCTCTTTGCGATTCGCTTCGCGATCCAATAGAATCGGCGTGGAGAGGAGAGAAGAAAAAGAGAGAAAACAAGAATGCGGTCGTCCCCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTTTTGTGCTAATTCCTTCTT</pcr_primer_p1>
		<pcr_primer_p2>AGTAAGTGTCTTCCCAATTTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTTTTGTGCTAATTCCTTCTTCTTCATAGCGAATTCGTCAGTGTATCGATACTTGATCTGAAATCAGGAACCCTTTTGTCAATCCATTCATCCCATGTTTTCATAACTTACGAAGAACTCGGAAGCTCCATGATCTACTCGACAGTGTGTGACAAGAGCGTATTCGGTTGGAAACTTGGCAAACTTGCATTTCTCGCATCTGAGAGATTATCAGTTTACCACTAGTTGAAATTGGGAAGACACTTACT</canonical_amplicon>
		<polymorphic_amplicon>ATCTTTTGTGCTAATTCCTTCTTCTTCATAGCGAATTCGTCAGTGTATCGATACTTGATCTGAAATCAGGAACCCTTTTGTCAATCCATTCATCCCATGTTTTCATAACTTACGAAGAACTCGGAAGCTCCATGATCTACTCGACAGTGTGTGACAAGAGCGTATTCGGTTGGAAAMTTGGCAAACTTGCATTTCTCGCATCTGAGAGATTATCAGTTTACCACTAGTTGAAATTGGGAAGACACTTACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39291</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>568807</contig_pos>
        <strand>+</strand>
        <context>TTTCTGGGGA[C/T]TTTTTTTGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAATCGAGATGAGAGACTTTGCGAAACAATTCGAAACTTTTCTGGGGA</left_flank>
        <right_flank>TTTTTTTGGAAATTTTCGAAAAGTCAATAAAGTAATTTTAGATTTAGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGCAATTTTTTATTCTCAACACCTTTCTAATTCCACTGAGTTCTCTGGTCAATAGATCAGTCTATCTAACATGTAAAAGTTCTCCTATATCTTCCATCCAAACTCAAAAACAGTTTAATTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAGATGTAACCGGTAGAAAAAGAAAAATAGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAGAAATTAAGGATTCATGAAATTAAGGATTCATGAAATTAAGGATTCGTTGCTAGCTTGCGGTTTCATCGAAGGTATACGGTAGGCTAGGTCAAAGAACGACGGAGAGAAGAACAGATAGAAATCGAGATGAGAGACTTTGCGAAACAATTCGAAACTTTTCTGGGGATTTTTTTTGGAAATTTTCGAAAAGTCAATAAAGTAATTTTAGATTTAGAGACCTGAAAAGCTGCAACGCATACTGTAGGACAGTTTACGGGGGGCCATCAAAGAAGCCGCGGTCATAAGGTTGACGGTAATATAAGAGGGTTACGAGGAAGACGGTAGACCGTTTGATGTCATTTGATGTTTTAATACCGGCTAAAAGTTATATTTTAGAATGTTAATATAAGATTTCTAGCTTATTTTTGAGCAATCAGAATTTTTTCCTGATTAAAAATCAAAAGGATTCAAGGGGAAAAGTTGTAGGTTCTGAAAATGAAAACACAGAAAGATTCCGAAAAAATTCAACTAGCTCTAACCACTTTTGTAGGCCTTATATGGTCTATACCTGTCAACATCTAGAGCACTATGCAAGGATTTTTCCAGGTTCTCAGGATATTCTCACTCTTTATTTATTCAAATATCTATTTGATTACACCTGCTCTTAATGGTCCCTTCTGTCGACCAG</canonical>
            <polymorphic>CTGCAATTTTTTATTCTCAACACCTTTCTAATTCCACTGAGTTCTCTGGTCAATAGATCAGTCTATCTAACATGTAAAAGTTCTCCTATATCTTCCATCCAAACTCAAAAACAGTTTAATTTAATTTGTTTATTGATCAGGTGTAATAAAACATTAGAGGGCAGGACATGAAAGACTCAGAAAAAATGCCCCTCACGAGGCCGATCTGAGTAGGGGAGGGGAAACGGGATAATTTAGATATTTGACACAGGAAAGATGTAACCGGTAGAAAAAGAAAAATAGGGAGCAAATATATCAATAACGGGTAATACTGGAAGAAATTAAGGATTCAAGAAATTAAGGATTCATGAAATTAAGGATTCATGAAATTAAGGATTCGTTGCTAGCTTGCGGTTTCATCGAAGGTATACGGTAGGCTAGGTCAAAGAACGACGGAGAGAAGAACAGATAGAAATCGAGATGAGAGACTTTGCGAAACAATTCGAAACTTTTCTGGGGAYTTTTTTTGGAAATTTTCGAAAAGTCAATAAAGTAATTTTAGATTTAGAGACCTGAAAAGCTGCAACGCATACTGTAGGACAGTTTACGGGGGGCCATCAAAGAAGCCGCGGTCATAAGGTTGACGGTAATATAAGAGGGTTACGAGGAAGACGGTAGACCGTTTGATGTCATTTGATGTTTTAATACCGGCTAAAAGTTATATTTTAGAATGTTAATATAAGATTTCTAGCTTATTTTTGAGCAATCAGAATTTTTTCCTGATTAAAAATCAAAAGGATTCAAGGGGAAAAGTTGTAGGTTCTGAAAATGAAAACACAGAAAGATTCCGAAAAAATTCAACTAGCTCTAACCACTTTTGTAGGCCTTATATGGTCTATACCTGTCAACATCTAGAGCACTATGCAAGGATTTTTCCAGGTTCTCAGGATATTCTCACTCTTTATTTATTCAAATATCTATTTGATTACACCTGCTCTTAATGGTCCCTTCTGTCGACCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAGGTATACGGTAGGCTAGGT</pcr_primer_p1>
		<pcr_primer_p2>CTTCCTCGTAACCCTCTTATATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GAAGGTATACGGTAGGCTAGGTCAAAGAACGACGGAGAGAAGAACAGATAGAAATCGAGATGAGAGACTTTGCGAAACAATTCGAAACTTTTCTGGGGATTTTTTTTGGAAATTTTCGAAAAGTCAATAAAGTAATTTTAGATTTAGAGACCTGAAAAGCTGCAACGCATACTGTAGGACAGTTTACGGGGGGCCATCAAAGAAGCCGCGGTCATAAGGTTGACGGTAATATAAGAGGGTTACGAGGAAG</canonical_amplicon>
		<polymorphic_amplicon>GAAGGTATACGGTAGGCTAGGTCAAAGAACGACGGAGAGAAGAACAGATAGAAATCGAGATGAGAGACTTTGCGAAACAATTCGAAACTTTTCTGGGGAYTTTTTTTGGAAATTTTCGAAAAGTCAATAAAGTAATTTTAGATTTAGAGACCTGAAAAGCTGCAACGCATACTGTAGGACAGTTTACGGGGGGCCATCAAAGAAGCCGCGGTCATAAGGTTGACGGTAATATAAGAGGGTTACGAGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39292</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>630622</contig_pos>
        <strand></strand>
        <context>attcatctgt[A/G]aattggcaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTGTGTTAAGCTCAAATTTCGATAGCTAAAATTCAGATAATTCATCTGT</left_flank>
        <right_flank>AATTGGCAAAGTTTCAAACTATTTGATCAACTTTGAGCTGAGCTATCGCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGAAATGGATGATAAGCTTTTCCTCCTCCGGTGATCCAGCAGTTCGAAGGATAGTAACGTCCTTTAACGTCCTTTGTTCCAGATGAATCAATCAATTGGAAAACTGGGGATACAGTACTCAATGTTCTTTAACGGCTTGTTCTGGAAGATCGGCTTGTCGACCAATTTGTGGGTCGAGGTTCCTTTGGAAAGGTACATGTTGGTCGATCGGCGCTCAAAGACATATTTTGACTTCGATTGGAACTCCCTTGAGAAGATTCTGTGAATATTTTAATTTGTGTTTTTATGATTTGTACATCTTTTTACAAACTATATAGTAACATAAAAGACTTTCTCTATATATCGTACAGTTCCATACAGGCAGTTAGCCCTTAAACGCATCCCAAATGTACAGTATGGCACATTTATCCGGACTTAAGTTTGGGCCTGCATAAAATTTGTGTACAGCGTTGTGTTAAGCTCAAATTTCGATAGCTAAAATTCAGATAATTCATCTGTAAATTGGCAAAGTTTCAAACTATTTGATCAACTTTGAGCTGAGCTATCGCTTGTAAAAGTTGTTTCATCTCATGCCGTACATAACGCCGTTCATCTTTGAACAACCATAACAAAACCTAGACTTGAGAGATAACTTTGAAAATTTCAGCTACTTTGAATCAAACTTGAAATTAGATATCTACCAGTTTTCTTGCTTCCAAGATGTTTATGTCTGAAGATACACCCGTTTTATCAGTCCGAGTAATTGTGCGCTGCCCTGTAGACCAAGATGCACACTACTCACAATCTGATTTCTGATTTGATCAGCTAAACAGTAACATCTCGATCTTGTCATTTCAAAAAATCTTCTTCTGATTTAACCTTTGGTCATTTTTGATGCGATTCTGTCTACGTCATGTACATATCCGAAGTTGTTAACACCTGAACCGTAGGGTCAATTGTCTACTACCTAAAGACATTGTTTATTGGATGATTGTAAATTTCAATGAGTCATCTCAAAAA</canonical>
            <polymorphic>GCGAAATGGATGATAAGCTTTTCCTCCTCCGGTGATCCAGCAGTTCGAAGGATAGTAACGTCCTTTAACGTCCTTTGTTCCAGATGAATCAATCAATTGGAAAACTGGGGATACAGTACTCAATGTTCTTTAACGGCTTGTTCTGGAAGATCGGCTTGTCGACCAATTTGTGGGTCGAGGTTCCTTTGGAAAGGTACATGTTGGTCGATCGGCGCTCAAAGACATATTTTGACTTCGATTGGAACTCCCTTGAGAAGATTCTGTGAATATTTTAATTTGTGTTTTTATGATTTGTACATCTTTTTACAAACTATATAGTAACATAAAAGACTTTCTCTATATATCGTACAGTTCCATACAGGCAGTTAGCCCTTAAACGCATCCCAAATGTACAGTATGGCACATTTATCCGGACTTAAGTTTGGGCCTGCATAAAATTTGTGTACAGCGTTGTGTTAAGCTCAAATTTCGATAGCTAAAATTCAGATAATTCATCTGTRAATTGGCAAAGTTTCAAACTATTTGATCAACTTTGAGCTGAGCTATCGCTTGTAAAAGTTGTTTCATCTCATGCCGTACATAACGCCGTTCATCTTTGAACAACCATAACAAAACCTAGACTTGAGAGATAACTTTGAAAATTTCAGCTACTTTGAATCAAACTTGAAATTAGATATCTACCAGTTTTCTTGCTTCCAAGATGTTTATGTCTGAAGATACACCCGTTTTATCAGTCCGAGTAATTGTGCGCTGCCCTGTAGACCAAGATGCACACTACTCACAATCTGATTTCTGATTTGATCAGCTAAACAGTAACATCTCGATCTTGTCATTTCAAAAAATCTTCTTCTGATTTAACCTTTGGTCATTTTTGATGCGATTCTGTCTACGTCATGTACATATCCGAAGTTGTTAACACCTGAACCGTAGGGTCAATTGTCTACTACCTAAAGACATTGTTTATTGGATGATTGTAAATTTCAATGAGTCATCTCAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACAGTTCCATACAGGCAGTTAG</pcr_primer_p1>
		<pcr_primer_p2>GTAGTGTGCATCTTGGTCTACA</pcr_primer_p2>
		<pcr_amplicon_size>432</pcr_amplicon_size>
		<canonical_amplicon>TACAGTTCCATACAGGCAGTTAGCCCTTAAACGCATCCCAAATGTACAGTATGGCACATTTATCCGGACTTAAGTTTGGGCCTGCATAAAATTTGTGTACAGCGTTGTGTTAAGCTCAAATTTCGATAGCTAAAATTCAGATAATTCATCTGTAAATTGGCAAAGTTTCAAACTATTTGATCAACTTTGAGCTGAGCTATCGCTTGTAAAAGTTGTTTCATCTCATGCCGTACATAACGCCGTTCATCTTTGAACAACCATAACAAAACCTAGACTTGAGAGATAACTTTGAAAATTTCAGCTACTTTGAATCAAACTTGAAATTAGATATCTACCAGTTTTCTTGCTTCCAAGATGTTTATGTCTGAAGATACACCCGTTTTATCAGTCCGAGTAATTGTGCGCTGCCCTGTAGACCAAGATGCACACTAC</canonical_amplicon>
		<polymorphic_amplicon>TACAGTTCCATACAGGCAGTTAGCCCTTAAACGCATCCCAAATGTACAGTATGGCACATTTATCCGGACTTAAGTTTGGGCCTGCATAAAATTTGTGTACAGCGTTGTGTTAAGCTCAAATTTCGATAGCTAAAATTCAGATAATTCATCTGTRAATTGGCAAAGTTTCAAACTATTTGATCAACTTTGAGCTGAGCTATCGCTTGTAAAAGTTGTTTCATCTCATGCCGTACATAACGCCGTTCATCTTTGAACAACCATAACAAAACCTAGACTTGAGAGATAACTTTGAAAATTTCAGCTACTTTGAATCAAACTTGAAATTAGATATCTACCAGTTTTCTTGCTTCCAAGATGTTTATGTCTGAAGATACACCCGTTTTATCAGTCCGAGTAATTGTGCGCTGCCCTGTAGACCAAGATGCACACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39293</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>630786</contig_pos>
        <strand></strand>
        <context>tgaatcaaac[T/G]tgaaattaga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ACCTAGACTTGAGAGATAACTTTGAAAATTTCAGCTACTTTGAATCAAAC</left_flank>
        <right_flank>TGAAATTAGATATCTACCAGTTTTCTTGCTTCCAAGATGTTTATGTCTGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTGTGGGTCGAGGTTCCTTTGGAAAGGTACATGTTGGTCGATCGGCGCTCAAAGACATATTTTGACTTCGATTGGAACTCCCTTGAGAAGATTCTGTGAATATTTTAATTTGTGTTTTTATGATTTGTACATCTTTTTACAAACTATATAGTAACATAAAAGACTTTCTCTATATATCGTACAGTTCCATACAGGCAGTTAGCCCTTAAACGCATCCCAAATGTACAGTATGGCACATTTATCCGGACTTAAGTTTGGGCCTGCATAAAATTTGTGTACAGCGTTGTGTTAAGCTCAAATTTCGATAGCTAAAATTCAGATAATTCATCTGTAAATTGGCAAAGTTTCAAACTATTTGATCAACTTTGAGCTGAGCTATCGCTTGTAAAAGTTGTTTCATCTCATGCCGTACATAACGCCGTTCATCTTTGAACAACCATAACAAAACCTAGACTTGAGAGATAACTTTGAAAATTTCAGCTACTTTGAATCAAACTTGAAATTAGATATCTACCAGTTTTCTTGCTTCCAAGATGTTTATGTCTGAAGATACACCCGTTTTATCAGTCCGAGTAATTGTGCGCTGCCCTGTAGACCAAGATGCACACTACTCACAATCTGATTTCTGATTTGATCAGCTAAACAGTAACATCTCGATCTTGTCATTTCAAAAAATCTTCTTCTGATTTAACCTTTGGTCATTTTTGATGCGATTCTGTCTACGTCATGTACATATCCGAAGTTGTTAACACCTGAACCGTAGGGTCAATTGTCTACTACCTAAAGACATTGTTTATTGGATGATTGTAAATTTCAATGAGTCATCTCAAAAAAATTGAAAATGTATATTTAGAAGAAGAGAGATAGACATACACAGAGTGCGCAAAAACGAGTTTCTCGACCGAATGAAGATAGGAAGAAGAAGAAGAAAAAGAAGACGTTGCCCTCCCGTGTCTTTTTTCCCGAGACGACAACCCCTGCGACCGACCGACCGACG</canonical>
            <polymorphic>AATTTGTGGGTCGAGGTTCCTTTGGAAAGGTACATGTTGGTCGATCGGCGCTCAAAGACATATTTTGACTTCGATTGGAACTCCCTTGAGAAGATTCTGTGAATATTTTAATTTGTGTTTTTATGATTTGTACATCTTTTTACAAACTATATAGTAACATAAAAGACTTTCTCTATATATCGTACAGTTCCATACAGGCAGTTAGCCCTTAAACGCATCCCAAATGTACAGTATGGCACATTTATCCGGACTTAAGTTTGGGCCTGCATAAAATTTGTGTACAGCGTTGTGTTAAGCTCAAATTTCGATAGCTAAAATTCAGATAATTCATCTGTAAATTGGCAAAGTTTCAAACTATTTGATCAACTTTGAGCTGAGCTATCGCTTGTAAAAGTTGTTTCATCTCATGCCGTACATAACGCCGTTCATCTTTGAACAACCATAACAAAACCTAGACTTGAGAGATAACTTTGAAAATTTCAGCTACTTTGAATCAAACKTGAAATTAGATATCTACCAGTTTTCTTGCTTCCAAGATGTTTATGTCTGAAGATACACCCGTTTTATCAGTCCGAGTAATTGTGCGCTGCCCTGTAGACCAAGATGCACACTACTCACAATCTGATTTCTGATTTGATCAGCTAAACAGTAACATCTCGATCTTGTCATTTCAAAAAATCTTCTTCTGATTTAACCTTTGGTCATTTTTGATGCGATTCTGTCTACGTCATGTACATATCCGAAGTTGTTAACACCTGAACCGTAGGGTCAATTGTCTACTACCTAAAGACATTGTTTATTGGATGATTGTAAATTTCAATGAGTCATCTCAAAAAAATTGAAAATGTATATTTAGAAGAAGAGAGATAGACATACACAGAGTGCGCAAAAACGAGTTTCTCGACCGAATGAAGATAGGAAGAAGAAGAAGAAAAAGAAGACGTTGCCCTCCCGTGTCTTTTTTCCCGAGACGACAACCCCTGCGACCGACCGACCGACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACAGTTCCATACAGGCAGTTAG</pcr_primer_p1>
		<pcr_primer_p2>GTAGTGTGCATCTTGGTCTACA</pcr_primer_p2>
		<pcr_amplicon_size>432</pcr_amplicon_size>
		<canonical_amplicon>TACAGTTCCATACAGGCAGTTAGCCCTTAAACGCATCCCAAATGTACAGTATGGCACATTTATCCGGACTTAAGTTTGGGCCTGCATAAAATTTGTGTACAGCGTTGTGTTAAGCTCAAATTTCGATAGCTAAAATTCAGATAATTCATCTGTAAATTGGCAAAGTTTCAAACTATTTGATCAACTTTGAGCTGAGCTATCGCTTGTAAAAGTTGTTTCATCTCATGCCGTACATAACGCCGTTCATCTTTGAACAACCATAACAAAACCTAGACTTGAGAGATAACTTTGAAAATTTCAGCTACTTTGAATCAAACTTGAAATTAGATATCTACCAGTTTTCTTGCTTCCAAGATGTTTATGTCTGAAGATACACCCGTTTTATCAGTCCGAGTAATTGTGCGCTGCCCTGTAGACCAAGATGCACACTAC</canonical_amplicon>
		<polymorphic_amplicon>TACAGTTCCATACAGGCAGTTAGCCCTTAAACGCATCCCAAATGTACAGTATGGCACATTTATCCGGACTTAAGTTTGGGCCTGCATAAAATTTGTGTACAGCGTTGTGTTAAGCTCAAATTTCGATAGCTAAAATTCAGATAATTCATCTGTAAATTGGCAAAGTTTCAAACTATTTGATCAACTTTGAGCTGAGCTATCGCTTGTAAAAGTTGTTTCATCTCATGCCGTACATAACGCCGTTCATCTTTGAACAACCATAACAAAACCTAGACTTGAGAGATAACTTTGAAAATTTCAGCTACTTTGAATCAAACKTGAAATTAGATATCTACCAGTTTTCTTGCTTCCAAGATGTTTATGTCTGAAGATACACCCGTTTTATCAGTCCGAGTAATTGTGCGCTGCCCTGTAGACCAAGATGCACACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39294</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>630835</contig_pos>
        <strand></strand>
        <context>gtttatgtct[G/A]aagatacacc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTTGAAATTAGATATCTACCAGTTTTCTTGCTTCCAAGATGTTTATGTCT</left_flank>
        <right_flank>AAGATACACCCGTTTTATCAGTCCGAGTAATTGTGCGCTGCCCTGTAGAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTCAAAGACATATTTTGACTTCGATTGGAACTCCCTTGAGAAGATTCTGTGAATATTTTAATTTGTGTTTTTATGATTTGTACATCTTTTTACAAACTATATAGTAACATAAAAGACTTTCTCTATATATCGTACAGTTCCATACAGGCAGTTAGCCCTTAAACGCATCCCAAATGTACAGTATGGCACATTTATCCGGACTTAAGTTTGGGCCTGCATAAAATTTGTGTACAGCGTTGTGTTAAGCTCAAATTTCGATAGCTAAAATTCAGATAATTCATCTGTAAATTGGCAAAGTTTCAAACTATTTGATCAACTTTGAGCTGAGCTATCGCTTGTAAAAGTTGTTTCATCTCATGCCGTACATAACGCCGTTCATCTTTGAACAACCATAACAAAACCTAGACTTGAGAGATAACTTTGAAAATTTCAGCTACTTTGAATCAAACTTGAAATTAGATATCTACCAGTTTTCTTGCTTCCAAGATGTTTATGTCTGAAGATACACCCGTTTTATCAGTCCGAGTAATTGTGCGCTGCCCTGTAGACCAAGATGCACACTACTCACAATCTGATTTCTGATTTGATCAGCTAAACAGTAACATCTCGATCTTGTCATTTCAAAAAATCTTCTTCTGATTTAACCTTTGGTCATTTTTGATGCGATTCTGTCTACGTCATGTACATATCCGAAGTTGTTAACACCTGAACCGTAGGGTCAATTGTCTACTACCTAAAGACATTGTTTATTGGATGATTGTAAATTTCAATGAGTCATCTCAAAAAAATTGAAAATGTATATTTAGAAGAAGAGAGATAGACATACACAGAGTGCGCAAAAACGAGTTTCTCGACCGAATGAAGATAGGAAGAAGAAGAAGAAAAAGAAGACGTTGCCCTCCCGTGTCTTTTTTCCCGAGACGACAACCCCTGCGACCGACCGACCGACGGCATTTTGTTGTAACATTGATTGAATACAAACTCTTGACATCATGGTCA</canonical>
            <polymorphic>GCTCAAAGACATATTTTGACTTCGATTGGAACTCCCTTGAGAAGATTCTGTGAATATTTTAATTTGTGTTTTTATGATTTGTACATCTTTTTACAAACTATATAGTAACATAAAAGACTTTCTCTATATATCGTACAGTTCCATACAGGCAGTTAGCCCTTAAACGCATCCCAAATGTACAGTATGGCACATTTATCCGGACTTAAGTTTGGGCCTGCATAAAATTTGTGTACAGCGTTGTGTTAAGCTCAAATTTCGATAGCTAAAATTCAGATAATTCATCTGTAAATTGGCAAAGTTTCAAACTATTTGATCAACTTTGAGCTGAGCTATCGCTTGTAAAAGTTGTTTCATCTCATGCCGTACATAACGCCGTTCATCTTTGAACAACCATAACAAAACCTAGACTTGAGAGATAACTTTGAAAATTTCAGCTACTTTGAATCAAACTTGAAATTAGATATCTACCAGTTTTCTTGCTTCCAAGATGTTTATGTCTRAAGATACACCCGTTTTATCAGTCCGAGTAATTGTGCGCTGCCCTGTAGACCAAGATGCACACTACTCACAATCTGATTTCTGATTTGATCAGCTAAACAGTAACATCTCGATCTTGTCATTTCAAAAAATCTTCTTCTGATTTAACCTTTGGTCATTTTTGATGCGATTCTGTCTACGTCATGTACATATCCGAAGTTGTTAACACCTGAACCGTAGGGTCAATTGTCTACTACCTAAAGACATTGTTTATTGGATGATTGTAAATTTCAATGAGTCATCTCAAAAAAATTGAAAATGTATATTTAGAAGAAGAGAGATAGACATACACAGAGTGCGCAAAAACGAGTTTCTCGACCGAATGAAGATAGGAAGAAGAAGAAGAAAAAGAAGACGTTGCCCTCCCGTGTCTTTTTTCCCGAGACGACAACCCCTGCGACCGACCGACCGACGGCATTTTGTTGTAACATTGATTGAATACAAACTCTTGACATCATGGTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>308 272 227 57 54 50 25 7</canonical_bands>
                <polymorphic_bands>308 272 252 57 54 50 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACAGTTCCATACAGGCAGTTAG</pcr_primer_p1>
		<pcr_primer_p2>GTAGTGTGCATCTTGGTCTACA</pcr_primer_p2>
		<pcr_amplicon_size>432</pcr_amplicon_size>
		<canonical_amplicon>TACAGTTCCATACAGGCAGTTAGCCCTTAAACGCATCCCAAATGTACAGTATGGCACATTTATCCGGACTTAAGTTTGGGCCTGCATAAAATTTGTGTACAGCGTTGTGTTAAGCTCAAATTTCGATAGCTAAAATTCAGATAATTCATCTGTAAATTGGCAAAGTTTCAAACTATTTGATCAACTTTGAGCTGAGCTATCGCTTGTAAAAGTTGTTTCATCTCATGCCGTACATAACGCCGTTCATCTTTGAACAACCATAACAAAACCTAGACTTGAGAGATAACTTTGAAAATTTCAGCTACTTTGAATCAAACTTGAAATTAGATATCTACCAGTTTTCTTGCTTCCAAGATGTTTATGTCTGAAGATACACCCGTTTTATCAGTCCGAGTAATTGTGCGCTGCCCTGTAGACCAAGATGCACACTAC</canonical_amplicon>
		<polymorphic_amplicon>TACAGTTCCATACAGGCAGTTAGCCCTTAAACGCATCCCAAATGTACAGTATGGCACATTTATCCGGACTTAAGTTTGGGCCTGCATAAAATTTGTGTACAGCGTTGTGTTAAGCTCAAATTTCGATAGCTAAAATTCAGATAATTCATCTGTAAATTGGCAAAGTTTCAAACTATTTGATCAACTTTGAGCTGAGCTATCGCTTGTAAAAGTTGTTTCATCTCATGCCGTACATAACGCCGTTCATCTTTGAACAACCATAACAAAACCTAGACTTGAGAGATAACTTTGAAAATTTCAGCTACTTTGAATCAAACTTGAAATTAGATATCTACCAGTTTTCTTGCTTCCAAGATGTTTATGTCTRAAGATACACCCGTTTTATCAGTCCGAGTAATTGTGCGCTGCCCTGTAGACCAAGATGCACACTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39295</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>630965</contig_pos>
        <strand>+</strand>
        <context>TTTCAAAAAA[C/T]CTTCTTCTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGATTTGATCAGCTAAACAGTAACATCTCGATCTTGTCATTTCAAAAAA</left_flank>
        <right_flank>CTTCTTCTGATTTAACCTTTGGTCATTTTTGATGCGATTCTGTCTACGTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGTACAGTTCCATACAGGCAGTTAGCCCTTAAACGCATCCCAAATGTACAGTATGGCACATTTATCCGGACTTAAGTTTGGGCCTGCATAAAATTTGTGTACAGCGTTGTGTTAAGCTCAAATTTCGATAGCTAAAATTCAGATAATTCATCTGTAAATTGGCAAAGTTTCAAACTATTTGATCAACTTTGAGCTGAGCTATCGCTTGTAAAAGTTGTTTCATCTCATGCCGTACATAACGCCGTTCATCTTTGAACAACCATAACAAAACCTAGACTTGAGAGATAACTTTGAAAATTTCAGCTACTTTGAATCAAACTTGAAATTAGATATCTACCAGTTTTCTTGCTTCCAAGATGTTTATGTCTGAAGATACACCCGTTTTATCAGTCCGAGTAATTGTGCGCTGCCCTGTAGACCAAGATGCACACTACTCACAATCTGATTTCTGATTTGATCAGCTAAACAGTAACATCTCGATCTTGTCATTTCAAAAAATCTTCTTCTGATTTAACCTTTGGTCATTTTTGATGCGATTCTGTCTACGTCATGTACATATCCGAAGTTGTTAACACCTGAACCGTAGGGTCAATTGTCTACTACCTAAAGACATTGTTTATTGGATGATTGTAAATTTCAATGAGTCATCTCAAAAAAATTGAAAATGTATATTTAGAAGAAGAGAGATAGACATACACAGAGTGCGCAAAAACGAGTTTCTCGACCGAATGAAGATAGGAAGAAGAAGAAGAAAAAGAAGACGTTGCCCTCCCGTGTCTTTTTTCCCGAGACGACAACCCCTGCGACCGACCGACCGACGGCATTTTGTTGTAACATTGATTGAATACAAACTCTTGACATCATGGTCACTTGTCTTTACCTTTTCTTACTCTTCATGTGACTCTTTTTTCAATCCTTTTTGGTTTTTAAAAGATTTCCAACCTATAGAATGTCGTCGTCTGCTATTTCGGATCAGATGGATGTGGAGTCGTCTTCAGC</canonical>
            <polymorphic>TCGTACAGTTCCATACAGGCAGTTAGCCCTTAAACGCATCCCAAATGTACAGTATGGCACATTTATCCGGACTTAAGTTTGGGCCTGCATAAAATTTGTGTACAGCGTTGTGTTAAGCTCAAATTTCGATAGCTAAAATTCAGATAATTCATCTGTAAATTGGCAAAGTTTCAAACTATTTGATCAACTTTGAGCTGAGCTATCGCTTGTAAAAGTTGTTTCATCTCATGCCGTACATAACGCCGTTCATCTTTGAACAACCATAACAAAACCTAGACTTGAGAGATAACTTTGAAAATTTCAGCTACTTTGAATCAAACTTGAAATTAGATATCTACCAGTTTTCTTGCTTCCAAGATGTTTATGTCTGAAGATACACCCGTTTTATCAGTCCGAGTAATTGTGCGCTGCCCTGTAGACCAAGATGCACACTACTCACAATCTGATTTCTGATTTGATCAGCTAAACAGTAACATCTCGATCTTGTCATTTCAAAAAAYCTTCTTCTGATTTAACCTTTGGTCATTTTTGATGCGATTCTGTCTACGTCATGTACATATCCGAAGTTGTTAACACCTGAACCGTAGGGTCAATTGTCTACTACCTAAAGACATTGTTTATTGGATGATTGTAAATTTCAATGAGTCATCTCAAAAAAATTGAAAATGTATATTTAGAAGAAGAGAGATAGACATACACAGAGTGCGCAAAAACGAGTTTCTCGACCGAATGAAGATAGGAAGAAGAAGAAGAAAAAGAAGACGTTGCCCTCCCGTGTCTTTTTTCCCGAGACGACAACCCCTGCGACCGACCGACCGACGGCATTTTGTTGTAACATTGATTGAATACAAACTCTTGACATCATGGTCACTTGTCTTTACCTTTTCTTACTCTTCATGTGACTCTTTTTTCAATCCTTTTTGGTTTTTAAAAGATTTCCAACCTATAGAATGTCGTCGTCTGCTATTTCGGATCAGATGGATGTGGAGTCGTCTTCAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGACCAAGATGCACACTACTC</pcr_primer_p1>
		<pcr_primer_p2>TTGAAATTTACAATCATCCAATAA</pcr_primer_p2>
		<pcr_amplicon_size>227</pcr_amplicon_size>
		<canonical_amplicon>GTAGACCAAGATGCACACTACTCACAATCTGATTTCTGATTTGATCAGCTAAACAGTAACATCTCGATCTTGTCATTTCAAAAAATCTTCTTCTGATTTAACCTTTGGTCATTTTTGATGCGATTCTGTCTACGTCATGTACATATCCGAAGTTGTTAACACCTGAACCGTAGGGTCAATTGTCTACTACCTAAAGACATTGTTTATTGGATGATTGTAAATTTCAA</canonical_amplicon>
		<polymorphic_amplicon>GTAGACCAAGATGCACACTACTCACAATCTGATTTCTGATTTGATCAGCTAAACAGTAACATCTCGATCTTGTCATTTCAAAAAAYCTTCTTCTGATTTAACCTTTGGTCATTTTTGATGCGATTCTGTCTACGTCATGTACATATCCGAAGTTGTTAACACCTGAACCGTAGGGTCAATTGTCTACTACCTAAAGACATTGTTTATTGGATGATTGTAAATTTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39296</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>632133</contig_pos>
        <strand></strand>
        <context>tcaaacatat[A/G]aaaaagttgt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACCGTAAATCCTGTTATAGAAGGGTCAATACAGGTCCCTGTCAAACATAT</left_flank>
        <right_flank>AAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAATTGCCTTG</right_flank>
        <qual_score>36</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCAGCTAGCATTCATTCAGAGAACACTTCAAATTTGTGAGAACGTGATTCTGAATTTTGAAGACGAGAAACAACATTTGATGAGTGATGTTCTTTTGGTGTGGGCGATGAAACAACAAAAACTAAGTATTGCAACCCTTCACACCCAACAGTTGCACTATAAAGAACTGGATCTGATCAATTTGCAATTCGAGTATTTCGGAGAACTCCTCCAACAAACTTTATCTGGATTGGATTATTTGAAACAATATTATCCGAATGTTGGATTTGAAGAGGTCCATTCGAAAGTCAGAAATCTCACACATTATTTTCTGTACTATTCTATTATTGTCAGTCGCCAGCCACCGTCGGTAATTGTTAAATGTGGAGAAGCAGAGAATCATAGAAGATCTAGATTCTGGTTTAACACTGAAATCAGGTAATTTTTTGCTATAATTCATTGAAATATACCGTAAATCCTGTTATAGAAGGGTCAATACAGGTCCCTGTCAAACATATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAATTGCCTTGTTAGTTGAAAAATTTTGATGTCTCTCATAGGAATCAAGACAATTGAGCTCACAATGTGGAAGCCCTTCTATTACAGGTTTTACCGTAAAACTAATAGTTCAGAATCCTTGGTGGAAGTGCATTCGGAATCGATACCAACAACGAAAATTCAAATGTCAATTGCTATTTGATTACTGATGAAACTGCCAAACAACTTCTGAATAATGCCTACTTGGATATGTAAGATTTCGTTTTGTAAATTTTCATTTTAAATTTCTTTTTTCCGTTTCGAATCAGAAGAGTTCTGCATTGAGCCAAACACAACAACATTCCAGAAGAAAGATGCAAGAGGAATTAAAGCGAAATTCGATGATATGGTATGAGAATCAATAAAAGTGAAAGAAAGATGAGAAATAACAAAAATATTATTTAAGAAAGTTGCAAAAAAAGTTCAACTTCGGCGAGACTCTG</canonical>
            <polymorphic>GAGCAGCTAGCATTCATTCAGAGAACACTTCAAATTTGTGAGAACGTGATTCTGAATTTTGAAGACGAGAAACAACATTTGATGAGTGATGTTCTTTTGGTGTGGGCGATGAAACAACAAAAACTAAGTATTGCAACCCTTCACACCCAACAGTTGCACTATAAAGAACTGGATCTGATCAATTTGCAATTCGAGTATTTCGGAGAACTCCTCCAACAAACTTTATCTGGATTGGATTATTTGAAACAATATTATCCGAATGTTGGATTTGAAGAGGTCCATTCGAAAGTCAGAAATCTCACACATTATTTTCTGTACTATTCTATTATTGTCAGTCGCCAGCCACCGTCGGTAATTGTTAAATGTGGAGAAGCAGAGAATCATAGAAGATCTAGATTCTGGTTTAACACTGAAATCAGGTAATTTTTTGCTATAATTCATTGAAATATACCGTAAATCCTGTTATAGAAGGGTCAATACAGGTCCCTGTCAAACATATRAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAATTGCCTTGTTAGTTGAAAAATTTTGATGTCTCTCATAGGAATCAAGACAATTGAGCTCACAATGTGGAAGCCCTTCTATTACAGGTTTTACCGTAAAACTAATAGTTCAGAATCCTTGGTGGAAGTGCATTCGGAATCGATACCAACAACGAAAATTCAAATGTCAATTGCTATTTGATTACTGATGAAACTGCCAAACAACTTCTGAATAATGCCTACTTGGATATGTAAGATTTCGTTTTGTAAATTTTCATTTTAAATTTCTTTTTTCCGTTTCGAATCAGAAGAGTTCTGCATTGAGCCAAACACAACAACATTCCAGAAGAAAGATGCAAGAGGAATTAAAGCGAAATTCGATGATATGGTATGAGAATCAATAAAAGTGAAAGAAAGATGAGAAATAACAAAAATATTATTTAAGAAAGTTGCAAAAAAAGTTCAACTTCGGCGAGACTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAATATACCGTAAATCCTGTT</pcr_primer_p1>
		<pcr_primer_p2>AATTTTCGTTGTTGGTATCG</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>TGAAATATACCGTAAATCCTGTTATAGAAGGGTCAATACAGGTCCCTGTCAAACATATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAATTGCCTTGTTAGTTGAAAAATTTTGATGTCTCTCATAGGAATCAAGACAATTGAGCTCACAATGTGGAAGCCCTTCTATTACAGGTTTTACCGTAAAACTAATAGTTCAGAATCCTTGGTGGAAGTGCATTCGGAATCGATACCAACAACGAAAATT</canonical_amplicon>
		<polymorphic_amplicon>TGAAATATACCGTAAATCCTGTTATAGAAGGGTCAATACAGGTCCCTGTCAAACATATRAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAATTGCCTTGTTAGTTGAAAAATTTTGATGTCTCTCATAGGAATCAAGACAATTGAGCTCACAATGTGGAAGCCCTTCTATTACAGGTTTTACCGTAAAACTAATAGTTCAGAATCCTTGGTGGAAGTGCATTCGGAATCGATACCAACAACGAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39297</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>632190</contig_pos>
        <strand></strand>
        <context>cttgttagtt[G/A]aaaaattttg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTGTCAACTGATAAATTGTTTATCATAATATCAGAATTGCCTTGTTAGTT</left_flank>
        <right_flank>AAAAATTTTGATGTCTCTCATAGGAATCAAGACAATTGAGCTCACAATGT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGAAGACGAGAAACAACATTTGATGAGTGATGTTCTTTTGGTGTGGGCGATGAAACAACAAAAACTAAGTATTGCAACCCTTCACACCCAACAGTTGCACTATAAAGAACTGGATCTGATCAATTTGCAATTCGAGTATTTCGGAGAACTCCTCCAACAAACTTTATCTGGATTGGATTATTTGAAACAATATTATCCGAATGTTGGATTTGAAGAGGTCCATTCGAAAGTCAGAAATCTCACACATTATTTTCTGTACTATTCTATTATTGTCAGTCGCCAGCCACCGTCGGTAATTGTTAAATGTGGAGAAGCAGAGAATCATAGAAGATCTAGATTCTGGTTTAACACTGAAATCAGGTAATTTTTTGCTATAATTCATTGAAATATACCGTAAATCCTGTTATAGAAGGGTCAATACAGGTCCCTGTCAAACATATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAATTGCCTTGTTAGTTGAAAAATTTTGATGTCTCTCATAGGAATCAAGACAATTGAGCTCACAATGTGGAAGCCCTTCTATTACAGGTTTTACCGTAAAACTAATAGTTCAGAATCCTTGGTGGAAGTGCATTCGGAATCGATACCAACAACGAAAATTCAAATGTCAATTGCTATTTGATTACTGATGAAACTGCCAAACAACTTCTGAATAATGCCTACTTGGATATGTAAGATTTCGTTTTGTAAATTTTCATTTTAAATTTCTTTTTTCCGTTTCGAATCAGAAGAGTTCTGCATTGAGCCAAACACAACAACATTCCAGAAGAAAGATGCAAGAGGAATTAAAGCGAAATTCGATGATATGGTATGAGAATCAATAAAAGTGAAAGAAAGATGAGAAATAACAAAAATATTATTTAAGAAAGTTGCAAAAAAAGTTCAACTTCGGCGAGACTCTGTTGCAACGAAGCGATATTGTCTTTGCTACAATATTCAGTTGCAAACCAATTGTGGAA</canonical>
            <polymorphic>TTTGAAGACGAGAAACAACATTTGATGAGTGATGTTCTTTTGGTGTGGGCGATGAAACAACAAAAACTAAGTATTGCAACCCTTCACACCCAACAGTTGCACTATAAAGAACTGGATCTGATCAATTTGCAATTCGAGTATTTCGGAGAACTCCTCCAACAAACTTTATCTGGATTGGATTATTTGAAACAATATTATCCGAATGTTGGATTTGAAGAGGTCCATTCGAAAGTCAGAAATCTCACACATTATTTTCTGTACTATTCTATTATTGTCAGTCGCCAGCCACCGTCGGTAATTGTTAAATGTGGAGAAGCAGAGAATCATAGAAGATCTAGATTCTGGTTTAACACTGAAATCAGGTAATTTTTTGCTATAATTCATTGAAATATACCGTAAATCCTGTTATAGAAGGGTCAATACAGGTCCCTGTCAAACATATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAATTGCCTTGTTAGTTRAAAAATTTTGATGTCTCTCATAGGAATCAAGACAATTGAGCTCACAATGTGGAAGCCCTTCTATTACAGGTTTTACCGTAAAACTAATAGTTCAGAATCCTTGGTGGAAGTGCATTCGGAATCGATACCAACAACGAAAATTCAAATGTCAATTGCTATTTGATTACTGATGAAACTGCCAAACAACTTCTGAATAATGCCTACTTGGATATGTAAGATTTCGTTTTGTAAATTTTCATTTTAAATTTCTTTTTTCCGTTTCGAATCAGAAGAGTTCTGCATTGAGCCAAACACAACAACATTCCAGAAGAAAGATGCAAGAGGAATTAAAGCGAAATTCGATGATATGGTATGAGAATCAATAAAAGTGAAAGAAAGATGAGAAATAACAAAAATATTATTTAAGAAAGTTGCAAAAAAAGTTCAACTTCGGCGAGACTCTGTTGCAACGAAGCGATATTGTCTTTGCTACAATATTCAGTTGCAAACCAATTGTGGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAATATACCGTAAATCCTGTT</pcr_primer_p1>
		<pcr_primer_p2>AATTTTCGTTGTTGGTATCG</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>TGAAATATACCGTAAATCCTGTTATAGAAGGGTCAATACAGGTCCCTGTCAAACATATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAATTGCCTTGTTAGTTGAAAAATTTTGATGTCTCTCATAGGAATCAAGACAATTGAGCTCACAATGTGGAAGCCCTTCTATTACAGGTTTTACCGTAAAACTAATAGTTCAGAATCCTTGGTGGAAGTGCATTCGGAATCGATACCAACAACGAAAATT</canonical_amplicon>
		<polymorphic_amplicon>TGAAATATACCGTAAATCCTGTTATAGAAGGGTCAATACAGGTCCCTGTCAAACATATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAATTGCCTTGTTAGTTRAAAAATTTTGATGTCTCTCATAGGAATCAAGACAATTGAGCTCACAATGTGGAAGCCCTTCTATTACAGGTTTTACCGTAAAACTAATAGTTCAGAATCCTTGGTGGAAGTGCATTCGGAATCGATACCAACAACGAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39298</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>632228</contig_pos>
        <strand></strand>
        <context>caagacaatt[G/A]agctcwcaat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GCCTTGTTAGTTGAAAAATTTTGATGTCTCTCATAGGAATCAAGACAATT</left_flank>
        <right_flank>AGCTCACAATGTGGAAGCCCTTCTATTACAGGTTTTACCGTAAAACTAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGGTGTGGGCGATGAAACAACAAAAACTAAGTATTGCAACCCTTCACACCCAACAGTTGCACTATAAAGAACTGGATCTGATCAATTTGCAATTCGAGTATTTCGGAGAACTCCTCCAACAAACTTTATCTGGATTGGATTATTTGAAACAATATTATCCGAATGTTGGATTTGAAGAGGTCCATTCGAAAGTCAGAAATCTCACACATTATTTTCTGTACTATTCTATTATTGTCAGTCGCCAGCCACCGTCGGTAATTGTTAAATGTGGAGAAGCAGAGAATCATAGAAGATCTAGATTCTGGTTTAACACTGAAATCAGGTAATTTTTTGCTATAATTCATTGAAATATACCGTAAATCCTGTTATAGAAGGGTCAATACAGGTCCCTGTCAAACATATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAATTGCCTTGTTAGTTGAAAAATTTTGATGTCTCTCATAGGAATCAAGACAATTGAGCTCACAATGTGGAAGCCCTTCTATTACAGGTTTTACCGTAAAACTAATAGTTCAGAATCCTTGGTGGAAGTGCATTCGGAATCGATACCAACAACGAAAATTCAAATGTCAATTGCTATTTGATTACTGATGAAACTGCCAAACAACTTCTGAATAATGCCTACTTGGATATGTAAGATTTCGTTTTGTAAATTTTCATTTTAAATTTCTTTTTTCCGTTTCGAATCAGAAGAGTTCTGCATTGAGCCAAACACAACAACATTCCAGAAGAAAGATGCAAGAGGAATTAAAGCGAAATTCGATGATATGGTATGAGAATCAATAAAAGTGAAAGAAAGATGAGAAATAACAAAAATATTATTTAAGAAAGTTGCAAAAAAAGTTCAACTTCGGCGAGACTCTGTTGCAACGAAGCGATATTGTCTTTGCTACAATATTCAGTTGCAAACCAATTGTGGAATCGAGCTGGTTGGAAAGAAAGTGGGTTGAAATTCAATG</canonical>
            <polymorphic>TTTGGTGTGGGCGATGAAACAACAAAAACTAAGTATTGCAACCCTTCACACCCAACAGTTGCACTATAAAGAACTGGATCTGATCAATTTGCAATTCGAGTATTTCGGAGAACTCCTCCAACAAACTTTATCTGGATTGGATTATTTGAAACAATATTATCCGAATGTTGGATTTGAAGAGGTCCATTCGAAAGTCAGAAATCTCACACATTATTTTCTGTACTATTCTATTATTGTCAGTCGCCAGCCACCGTCGGTAATTGTTAAATGTGGAGAAGCAGAGAATCATAGAAGATCTAGATTCTGGTTTAACACTGAAATCAGGTAATTTTTTGCTATAATTCATTGAAATATACCGTAAATCCTGTTATAGAAGGGTCAATACAGGTCCCTGTCAAACATATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAATTGCCTTGTTAGTTGAAAAATTTTGATGTCTCTCATAGGAATCAAGACAATTRAGCTCACAATGTGGAAGCCCTTCTATTACAGGTTTTACCGTAAAACTAATAGTTCAGAATCCTTGGTGGAAGTGCATTCGGAATCGATACCAACAACGAAAATTCAAATGTCAATTGCTATTTGATTACTGATGAAACTGCCAAACAACTTCTGAATAATGCCTACTTGGATATGTAAGATTTCGTTTTGTAAATTTTCATTTTAAATTTCTTTTTTCCGTTTCGAATCAGAAGAGTTCTGCATTGAGCCAAACACAACAACATTCCAGAAGAAAGATGCAAGAGGAATTAAAGCGAAATTCGATGATATGGTATGAGAATCAATAAAAGTGAAAGAAAGATGAGAAATAACAAAAATATTATTTAAGAAAGTTGCAAAAAAAGTTCAACTTCGGCGAGACTCTGTTGCAACGAAGCGATATTGTCTTTGCTACAATATTCAGTTGCAAACCAATTGTGGAATCGAGCTGGTTGGAAAGAAAGTGGGTTGAAATTCAATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>495 340 117 48</canonical_bands>
                <polymorphic_bands>612 340 48</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAATATACCGTAAATCCTGTT</pcr_primer_p1>
		<pcr_primer_p2>AATTTTCGTTGTTGGTATCG</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>TGAAATATACCGTAAATCCTGTTATAGAAGGGTCAATACAGGTCCCTGTCAAACATATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAATTGCCTTGTTAGTTGAAAAATTTTGATGTCTCTCATAGGAATCAAGACAATTGAGCTCACAATGTGGAAGCCCTTCTATTACAGGTTTTACCGTAAAACTAATAGTTCAGAATCCTTGGTGGAAGTGCATTCGGAATCGATACCAACAACGAAAATT</canonical_amplicon>
		<polymorphic_amplicon>TGAAATATACCGTAAATCCTGTTATAGAAGGGTCAATACAGGTCCCTGTCAAACATATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAATTGCCTTGTTAGTTGAAAAATTTTGATGTCTCTCATAGGAATCAAGACAATTRAGCTCACAATGTGGAAGCCCTTCTATTACAGGTTTTACCGTAAAACTAATAGTTCAGAATCCTTGGTGGAAGTGCATTCGGAATCGATACCAACAACGAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39299</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>632234</contig_pos>
        <strand></strand>
        <context>aattragctc[A/T]caatgtggaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTAGTTGAAAAATTTTGATGTCTCTCATAGGAATCAAGACAATTGAGCTC</left_flank>
        <right_flank>CAATGTGGAAGCCCTTCTATTACAGGTTTTACCGTAAAACTAATAGTTCA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGGGCGATGAAACAACAAAAACTAAGTATTGCAACCCTTCACACCCAACAGTTGCACTATAAAGAACTGGATCTGATCAATTTGCAATTCGAGTATTTCGGAGAACTCCTCCAACAAACTTTATCTGGATTGGATTATTTGAAACAATATTATCCGAATGTTGGATTTGAAGAGGTCCATTCGAAAGTCAGAAATCTCACACATTATTTTCTGTACTATTCTATTATTGTCAGTCGCCAGCCACCGTCGGTAATTGTTAAATGTGGAGAAGCAGAGAATCATAGAAGATCTAGATTCTGGTTTAACACTGAAATCAGGTAATTTTTTGCTATAATTCATTGAAATATACCGTAAATCCTGTTATAGAAGGGTCAATACAGGTCCCTGTCAAACATATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAATTGCCTTGTTAGTTGAAAAATTTTGATGTCTCTCATAGGAATCAAGACAATTGAGCTCACAATGTGGAAGCCCTTCTATTACAGGTTTTACCGTAAAACTAATAGTTCAGAATCCTTGGTGGAAGTGCATTCGGAATCGATACCAACAACGAAAATTCAAATGTCAATTGCTATTTGATTACTGATGAAACTGCCAAACAACTTCTGAATAATGCCTACTTGGATATGTAAGATTTCGTTTTGTAAATTTTCATTTTAAATTTCTTTTTTCCGTTTCGAATCAGAAGAGTTCTGCATTGAGCCAAACACAACAACATTCCAGAAGAAAGATGCAAGAGGAATTAAAGCGAAATTCGATGATATGGTATGAGAATCAATAAAAGTGAAAGAAAGATGAGAAATAACAAAAATATTATTTAAGAAAGTTGCAAAAAAAGTTCAACTTCGGCGAGACTCTGTTGCAACGAAGCGATATTGTCTTTGCTACAATATTCAGTTGCAAACCAATTGTGGAATCGAGCTGGTTGGAAAGAAAGTGGGTTGAAATTCAATGGAGCAT</canonical>
            <polymorphic>GTGGGCGATGAAACAACAAAAACTAAGTATTGCAACCCTTCACACCCAACAGTTGCACTATAAAGAACTGGATCTGATCAATTTGCAATTCGAGTATTTCGGAGAACTCCTCCAACAAACTTTATCTGGATTGGATTATTTGAAACAATATTATCCGAATGTTGGATTTGAAGAGGTCCATTCGAAAGTCAGAAATCTCACACATTATTTTCTGTACTATTCTATTATTGTCAGTCGCCAGCCACCGTCGGTAATTGTTAAATGTGGAGAAGCAGAGAATCATAGAAGATCTAGATTCTGGTTTAACACTGAAATCAGGTAATTTTTTGCTATAATTCATTGAAATATACCGTAAATCCTGTTATAGAAGGGTCAATACAGGTCCCTGTCAAACATATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAATTGCCTTGTTAGTTGAAAAATTTTGATGTCTCTCATAGGAATCAAGACAATTGAGCTCWCAATGTGGAAGCCCTTCTATTACAGGTTTTACCGTAAAACTAATAGTTCAGAATCCTTGGTGGAAGTGCATTCGGAATCGATACCAACAACGAAAATTCAAATGTCAATTGCTATTTGATTACTGATGAAACTGCCAAACAACTTCTGAATAATGCCTACTTGGATATGTAAGATTTCGTTTTGTAAATTTTCATTTTAAATTTCTTTTTTCCGTTTCGAATCAGAAGAGTTCTGCATTGAGCCAAACACAACAACATTCCAGAAGAAAGATGCAAGAGGAATTAAAGCGAAATTCGATGATATGGTATGAGAATCAATAAAAGTGAAAGAAAGATGAGAAATAACAAAAATATTATTTAAGAAAGTTGCAAAAAAAGTTCAACTTCGGCGAGACTCTGTTGCAACGAAGCGATATTGTCTTTGCTACAATATTCAGTTGCAAACCAATTGTGGAATCGAGCTGGTTGGAAAGAAAGTGGGTTGAAATTCAATGGAGCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CACNNNGTG</site>
                <isoschizomers>
                    <enzyme>AdeI</enzyme>
                    <enzyme>DraIII</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>192 181 143 127 77 55 42 42 39 26 22 21 13 7 6 3 2 2</canonical_bands>
                <polymorphic_bands>199 181 143 127 77 55 42 42 39 26 22 21 13 6 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAATATACCGTAAATCCTGTT</pcr_primer_p1>
		<pcr_primer_p2>AATTTTCGTTGTTGGTATCG</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>TGAAATATACCGTAAATCCTGTTATAGAAGGGTCAATACAGGTCCCTGTCAAACATATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAATTGCCTTGTTAGTTGAAAAATTTTGATGTCTCTCATAGGAATCAAGACAATTGAGCTCACAATGTGGAAGCCCTTCTATTACAGGTTTTACCGTAAAACTAATAGTTCAGAATCCTTGGTGGAAGTGCATTCGGAATCGATACCAACAACGAAAATT</canonical_amplicon>
		<polymorphic_amplicon>TGAAATATACCGTAAATCCTGTTATAGAAGGGTCAATACAGGTCCCTGTCAAACATATAAAAAAGTTGTCAACTGATAAATTGTTTATCATAATATCAGAATTGCCTTGTTAGTTGAAAAATTTTGATGTCTCTCATAGGAATCAAGACAATTGAGCTCWCAATGTGGAAGCCCTTCTATTACAGGTTTTACCGTAAAACTAATAGTTCAGAATCCTTGGTGGAAGTGCATTCGGAATCGATACCAACAACGAAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39300</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>670490</contig_pos>
        <strand>+</strand>
        <context>GTTTCCGCCT[C/T]GAGAACAAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCGATTCTGAGATTCACCACTTTTTGCGCACGATCGACTGTTTCCGCCT</left_flank>
        <right_flank>GAGAACAAGATCTCCAGGAGTTGGAAGATCGTCTTTCCAACCGGAAACAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCATTTTCGCCGGAGTCTCCACGTTGAATGTATAGAGTGTGGCGCCGGTCTCTTTTGCCAGCTCGATGTCTTTTTCGGTTGGCGGGCCGACCTCGAAATCAACCAATTGTAGCTTGCACTGCTCACTTTTGTAGGTATTCAAGATCTCGAGAATCGCTTCAAGAGTTCCTTCGACGTCAGTTCGAATCTATATAAAACTATTTTAATTCTGTCCCGGACCTCCACCCCCGACTCTAAACGACTCACAATAAGACGGAACTTCGGTGATCCATCTTCCACATCTTTCTCAATTCGTTGATTTCTATGAACAATGTTCCTGAGCGTTGAACCAAAGCGCTGTCCTCGATCCAGCAATTTCTGCCGGTTGCTAAGGTACGTTTCTCTTGCTTTGTCTCTCTGATCCCTCGTTTCTTCCCAATCTTTGTCGGCTTTCTCACGCATTACTTTATCGATTCTGAGATTCACCACTTTTTGCGCACGATCGACTGTTTCCGCCTCGAGAACAAGATCTCCAGGAGTTGGAAGATCGTCTTTCCAACCGGAAACACGTACTGGTTGCGATGGCGTCGCTTCCATCACAATTTTTCCGTTCTCATCGTGCATTGTTTTCACACGACACCAAGAATTTCCAGCTACTAGGATACACCCTTTCTTCAGTGTTCCTCGAGATACAACCAGTGTGCAAACCTTTCCAATTCCATGAACAACCGATGATTCAATGACGACAGCCTCAGATTTTCCATTTTTCGTGGCTTTGAGATCCATTACATCTGCTTGTAAAAGGAGAGCATCTTGAAGAGCTGGTAGATTTCTTGACTGCAACGCTGAGACTTCTACACATTGAATATCTCCTCCGAGTTGTTCAACGACGACATCATGTTCTAGTAGAGATCTCATAGCTCTCATTGGATCAGCATTCGGCTTGTCGATCTTGTTGACTGCCACTACAAGCTGAACATTGGCGTCTTTTGCAAATTTGATCGATTGTGCAGTCTGCT</canonical>
            <polymorphic>TTTCATTTTCGCCGGAGTCTCCACGTTGAATGTATAGAGTGTGGCGCCGGTCTCTTTTGCCAGCTCGATGTCTTTTTCGGTTGGCGGGCCGACCTCGAAATCAACCAATTGTAGCTTGCACTGCTCACTTTTGTAGGTATTCAAGATCTCGAGAATCGCTTCAAGAGTTCCTTCGACGTCAGTTCGAATCTATATAAAACTATTTTAATTCTGTCCCGGACCTCCACCCCCGACTCTAAACGACTCACAATAAGACGGAACTTCGGTGATCCATCTTCCACATCTTTCTCAATTCGTTGATTTCTATGAACAATGTTCCTGAGCGTTGAACCAAAGCGCTGTCCTCGATCCAGCAATTTCTGCCGGTTGCTAAGGTACGTTTCTCTTGCTTTGTCTCTCTGATCCCTCGTTTCTTCCCAATCTTTGTCGGCTTTCTCACGCATTACTTTATCGATTCTGAGATTCACCACTTTTTGCGCACGATCGACTGTTTCCGCCTYGAGAACAAGATCTCCAGGAGTTGGAAGATCGTCTTTCCAACCGGAAACACGTACTGGTTGCGATGGCGTCGCTTCCATCACAATTTTTCCGTTCTCATCGTGCATTGTTTTCACACGACACCAAGAATTTCCAGCTACTAGGATACACCCTTTCTTCAGTGTTCCTCGAGATACAACCAGTGTGCAAACCTTTCCAATTCCATGAACAACCGATGATTCAATGACGACAGCCTCAGATTTTCCATTTTTCGTGGCTTTGAGATCCATTACATCTGCTTGTAAAAGGAGAGCATCTTGAAGAGCTGGTAGATTTCTTGACTGCAACGCTGAGACTTCTACACATTGAATATCTCCTCCGAGTTGTTCAACGACGACATCATGTTCTAGTAGAGATCTCATAGCTCTCATTGGATCAGCATTCGGCTTGTCGATCTTGTTGACTGCCACTACAAGCTGAACATTGGCGTCTTTTGCAAATTTGATCGATTGTGCAGTCTGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CYCGRG</site>
                <isoschizomers>
                    <enzyme>Ama87I</enzyme>
                    <enzyme>AvaI</enzyme>
                    <enzyme>BcoI</enzyme>
                    <enzyme>BsiHKCI</enzyme>
                    <enzyme>BsoBI</enzyme>
                    <enzyme>Eco88I</enzyme>
                    <enzyme>Nli3877I</enzyme>
                    <enzyme>NspIII</enzyme>
                </isoschizomers>
                <canonical_bands>350 335 167 148</canonical_bands>
                <polymorphic_bands>517 335 148</polymorphic_bands>
            </assay>
            <assay>
                <site>CTCGAG</site>
                <isoschizomers>
                    <enzyme>BssHI</enzyme>
                    <enzyme>PaeR7I</enzyme>
                    <enzyme>SciI</enzyme>
                    <enzyme>Sfr274I</enzyme>
                    <enzyme>SlaI</enzyme>
                    <enzyme>TliI</enzyme>
                    <enzyme>XhoI</enzyme>
                </isoschizomers>
                <canonical_bands>350 335 167 148</canonical_bands>
                <polymorphic_bands>517 335 148</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>262 167 161 106 66 55 54 33 30 24 16 15 11</canonical_bands>
                <polymorphic_bands>262 182 161 106 66 55 54 33 30 24 16 11</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>186 182 167 156 142 127 20 12 6 2</canonical_bands>
                <polymorphic_bands>349 186 156 142 127 20 12 6 2</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>350 335 167 148</canonical_bands>
                <polymorphic_bands>517 335 148</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTTCTCACGCATTACTTTAT</pcr_primer_p1>
		<pcr_primer_p2>GTATCTCGAGGAACACTGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GCTTTCTCACGCATTACTTTATCGATTCTGAGATTCACCACTTTTTGCGCACGATCGACTGTTTCCGCCTCGAGAACAAGATCTCCAGGAGTTGGAAGATCGTCTTTCCAACCGGAAACACGTACTGGTTGCGATGGCGTCGCTTCCATCACAATTTTTCCGTTCTCATCGTGCATTGTTTTCACACGACACCAAGAATTTCCAGCTACTAGGATACACCCTTTCTTCAGTGTTCCTCGAGATAC</canonical_amplicon>
		<polymorphic_amplicon>GCTTTCTCACGCATTACTTTATCGATTCTGAGATTCACCACTTTTTGCGCACGATCGACTGTTTCCGCCTYGAGAACAAGATCTCCAGGAGTTGGAAGATCGTCTTTCCAACCGGAAACACGTACTGGTTGCGATGGCGTCGCTTCCATCACAATTTTTCCGTTCTCATCGTGCATTGTTTTCACACGACACCAAGAATTTCCAGCTACTAGGATACACCCTTTCTTCAGTGTTCCTCGAGATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39301</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>670520</contig_pos>
        <strand>+</strand>
        <context>GTTGGAAGAT[C/T]GTCTTTCCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGATCGACTGTTTCCGCCTCGAGAACAAGATCTCCAGGAGTTGGAAGAT</left_flank>
        <right_flank>GTCTTTCCAACCGGAAACACGTACTGGTTGCGATGGCGTCGCTTCCATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTATAGAGTGTGGCGCCGGTCTCTTTTGCCAGCTCGATGTCTTTTTCGGTTGGCGGGCCGACCTCGAAATCAACCAATTGTAGCTTGCACTGCTCACTTTTGTAGGTATTCAAGATCTCGAGAATCGCTTCAAGAGTTCCTTCGACGTCAGTTCGAATCTATATAAAACTATTTTAATTCTGTCCCGGACCTCCACCCCCGACTCTAAACGACTCACAATAAGACGGAACTTCGGTGATCCATCTTCCACATCTTTCTCAATTCGTTGATTTCTATGAACAATGTTCCTGAGCGTTGAACCAAAGCGCTGTCCTCGATCCAGCAATTTCTGCCGGTTGCTAAGGTACGTTTCTCTTGCTTTGTCTCTCTGATCCCTCGTTTCTTCCCAATCTTTGTCGGCTTTCTCACGCATTACTTTATCGATTCTGAGATTCACCACTTTTTGCGCACGATCGACTGTTTCCGCCTCGAGAACAAGATCTCCAGGAGTTGGAAGATCGTCTTTCCAACCGGAAACACGTACTGGTTGCGATGGCGTCGCTTCCATCACAATTTTTCCGTTCTCATCGTGCATTGTTTTCACACGACACCAAGAATTTCCAGCTACTAGGATACACCCTTTCTTCAGTGTTCCTCGAGATACAACCAGTGTGCAAACCTTTCCAATTCCATGAACAACCGATGATTCAATGACGACAGCCTCAGATTTTCCATTTTTCGTGGCTTTGAGATCCATTACATCTGCTTGTAAAAGGAGAGCATCTTGAAGAGCTGGTAGATTTCTTGACTGCAACGCTGAGACTTCTACACATTGAATATCTCCTCCGAGTTGTTCAACGACGACATCATGTTCTAGTAGAGATCTCATAGCTCTCATTGGATCAGCATTCGGCTTGTCGATCTTGTTGACTGCCACTACAAGCTGAACATTGGCGTCTTTTGCAAATTTGATCGATTGTGCAGTCTGCTCTTTGACTCCATCATCGGCAGCCACCACAA</canonical>
            <polymorphic>TGTATAGAGTGTGGCGCCGGTCTCTTTTGCCAGCTCGATGTCTTTTTCGGTTGGCGGGCCGACCTCGAAATCAACCAATTGTAGCTTGCACTGCTCACTTTTGTAGGTATTCAAGATCTCGAGAATCGCTTCAAGAGTTCCTTCGACGTCAGTTCGAATCTATATAAAACTATTTTAATTCTGTCCCGGACCTCCACCCCCGACTCTAAACGACTCACAATAAGACGGAACTTCGGTGATCCATCTTCCACATCTTTCTCAATTCGTTGATTTCTATGAACAATGTTCCTGAGCGTTGAACCAAAGCGCTGTCCTCGATCCAGCAATTTCTGCCGGTTGCTAAGGTACGTTTCTCTTGCTTTGTCTCTCTGATCCCTCGTTTCTTCCCAATCTTTGTCGGCTTTCTCACGCATTACTTTATCGATTCTGAGATTCACCACTTTTTGCGCACGATCGACTGTTTCCGCCTCGAGAACAAGATCTCCAGGAGTTGGAAGATYGTCTTTCCAACCGGAAACACGTACTGGTTGCGATGGCGTCGCTTCCATCACAATTTTTCCGTTCTCATCGTGCATTGTTTTCACACGACACCAAGAATTTCCAGCTACTAGGATACACCCTTTCTTCAGTGTTCCTCGAGATACAACCAGTGTGCAAACCTTTCCAATTCCATGAACAACCGATGATTCAATGACGACAGCCTCAGATTTTCCATTTTTCGTGGCTTTGAGATCCATTACATCTGCTTGTAAAAGGAGAGCATCTTGAAGAGCTGGTAGATTTCTTGACTGCAACGCTGAGACTTCTACACATTGAATATCTCCTCCGAGTTGTTCAACGACGACATCATGTTCTAGTAGAGATCTCATAGCTCTCATTGGATCAGCATTCGGCTTGTCGATCTTGTTGACTGCCACTACAAGCTGAACATTGGCGTCTTTTGCAAATTTGATCGATTGTGCAGTCTGCTCTTTGACTCCATCATCGGCAGCCACCACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>234 131 123 114 81 79 54 51 50 27 19 19 18</canonical_bands>
                <polymorphic_bands>252 131 123 114 81 79 54 51 50 27 19 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTTTCTCACGCATTACTTTAT</pcr_primer_p1>
		<pcr_primer_p2>GTATCTCGAGGAACACTGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GCTTTCTCACGCATTACTTTATCGATTCTGAGATTCACCACTTTTTGCGCACGATCGACTGTTTCCGCCTCGAGAACAAGATCTCCAGGAGTTGGAAGATCGTCTTTCCAACCGGAAACACGTACTGGTTGCGATGGCGTCGCTTCCATCACAATTTTTCCGTTCTCATCGTGCATTGTTTTCACACGACACCAAGAATTTCCAGCTACTAGGATACACCCTTTCTTCAGTGTTCCTCGAGATAC</canonical_amplicon>
		<polymorphic_amplicon>GCTTTCTCACGCATTACTTTATCGATTCTGAGATTCACCACTTTTTGCGCACGATCGACTGTTTCCGCCTCGAGAACAAGATCTCCAGGAGTTGGAAGATYGTCTTTCCAACCGGAAACACGTACTGGTTGCGATGGCGTCGCTTCCATCACAATTTTTCCGTTCTCATCGTGCATTGTTTTCACACGACACCAAGAATTTCCAGCTACTAGGATACACCCTTTCTTCAGTGTTCCTCGAGATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39302</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>677376</contig_pos>
        <strand></strand>
        <context>GAATCTACCC[G/T]ATCAGAGCGC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TGCAGCACGGATTACTGGCATGTGCAAGTGATTGGGTTGTGAATCTACCC</left_flank>
        <right_flank>ATCAGAGCGCAGGTATCACTTTTTTTCATGATGTACTGTATTTCTAATGT</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCGAAACATAACAATTGCTCTAAACTGTATGATAAAGCAACATGCGGACACGTGCTTCACCTATAAAATCACTGTTACAATGAATGATAAGGTGATCGTTTCGAGAAGAACAAAAATGTTGTTCTCGTTACTGATCTCTTCTAAATTCCTAATTTCATCATGTCTTCTCTTTTTATCAGTAGCAGCTCACGAGGATACCGATCCAGAGCTAAACATGAATACGGTAAGGTTTCCGGGATATTATCGAATACAAAAGTTTATAGTCTCAAATCATTGAACGTTGGGGATACAAAGCAGAAGTGCATACTGTAACTACCGAAGATGGATACATTTTGGAAATGCAAAGGATTCCAAACGGAAAAAGTTTGTATTTTAATTTATATCCTTTAGAACAATAGAGATTTAGAGAGTGTATCCTGGCCGAATGGAAAGAAACCTGTTGTTCTAATGCAGCACGGATTACTGGCATGTGCAAGTGATTGGGTTGTGAATCTACCCGATCAGAGCGCAGGTATCACTTTTTTTCATGATGTACTGTATTTCTAATGTACGCTTTGTCAGCTTATGTATTCGCGGATGCTGGTTTTGATGTGTGGTTGGGTAACGTTCGTGGAACAACCTACGGAAGAAAACACACAACTCTTGATCCAAAAGAAACTCCATTTTGGCAATTCAGTTGGGATGAAATGGCTCAGTACGATCTGACGGCTATGGTGGACCACGTTTTGGCAATGACTGGACAAGAAAATCTATATTATATGGGACATTCCCAAGGTACACTGATCATGTTCACACGATTGGCAAAAGATACTGATGGCAGCTTTGCAAAGAAGATCAAGAGATATTTCGCATTAGCTCCAATAGGATCTGTAAAGAACATCAAAGGATTCTTATCCTACTTTGCTCATAAGTTCTCTCCTGAATTCGATGTAAGTCGGACACATGATTAATGGAAAAACTAAACAATAATTTTTATAGGGATGGTATGATCTGTTTGGT</canonical>
            <polymorphic>ACCGAAACATAACAATTGCTCTAAACTGTATGATAAAGCAACATGCGGACACGTGCTTCACCTATAAAATCACTGTTACAATGAATGATAAGGTGATCGTTTCGAGAAGAACAAAAATGTTGTTCTCGTTACTGATCTCTTCTAAATTCCTAATTTCATCATGTCTTCTCTTTTTATCAGTAGCAGCTCACGAGGATACCGATCCAGAGCTAAACATGAATACGGTAAGGTTTCCGGGATATTATCGAATACAAAAGTTTATAGTCTCAAATCATTGAACGTTGGGGATACAAAGCAGAAGTGCATACTGTAACTACCGAAGATGGATACATTTTGGAAATGCAAAGGATTCCAAACGGAAAAAGTTTGTATTTTAATTTATATCCTTTAGAACAATAGAGATTTAGAGAGTGTATCCTGGCCGAATGGAAAGAAACCTGTTGTTCTAATGCAGCACGGATTACTGGCATGTGCAAGTGATTGGGTTGTGAATCTACCCKATCAGAGCGCAGGTATCACTTTTTTTCATGATGTACTGTATTTCTAATGTACGCTTTGTCAGCTTATGTATTCGCGGATGCTGGTTTTGATGTGTGGTTGGGTAACGTTCGTGGAACAACCTACGGAAGAAAACACACAACTCTTGATCCAAAAGAAACTCCATTTTGGCAATTCAGTTGGGATGAAATGGCTCAGTACGATCTGACGGCTATGGTGGACCACGTTTTGGCAATGACTGGACAAGAAAATCTATATTATATGGGACATTCCCAAGGTACACTGATCATGTTCACACGATTGGCAAAAGATACTGATGGCAGCTTTGCAAAGAAGATCAAGAGATATTTCGCATTAGCTCCAATAGGATCTGTAAAGAACATCAAAGGATTCTTATCCTACTTTGCTCATAAGTTCTCTCCTGAATTCGATGTAAGTCGGACACATGATTAATGGAAAAACTAAACAATAATTTTTATAGGGATGGTATGATCTGTTTGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>299 146 123 94 83 67 54 51 39 32 12</canonical_bands>
                <polymorphic_bands>445 123 94 83 67 54 51 39 32 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGTAACTACCGAAGATGGATAC</pcr_primer_p1>
		<pcr_primer_p2>CAAAGCGTACATTAGAAATACAGT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTGTAACTACCGAAGATGGATACATTTTGGAAATGCAAAGGATTCCAAACGGAAAAAGTTTGTATTTTAATTTATATCCTTTAGAACAATAGAGATTTAGAGAGTGTATCCTGGCCGAATGGAAAGAAACCTGTTGTTCTAATGCAGCACGGATTACTGGCATGTGCAAGTGATTGGGTTGTGAATCTACCCGATCAGAGCGCAGGTATCACTTTTTTTCATGATGTACTGTATTTCTAATGTACGCTTTG</canonical_amplicon>
		<polymorphic_amplicon>CTGTAACTACCGAAGATGGATACATTTTGGAAATGCAAAGGATTCCAAACGGAAAAAGTTTGTATTTTAATTTATATCCTTTAGAACAATAGAGATTTAGAGAGTGTATCCTGGCCGAATGGAAAGAAACCTGTTGTTCTAATGCAGCACGGATTACTGGCATGTGCAAGTGATTGGGTTGTGAATCTACCCKATCAGAGCGCAGGTATCACTTTTTTTCATGATGTACTGTATTTCTAATGTACGCTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39303</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>689796</contig_pos>
        <strand>+</strand>
        <context>ATCTACTTTC[A/C]CATTTGGGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AATTTGATGTTCCTTATCAAGACGGAGCCATCGCTATATCATCTACTTTC</left_flank>
        <right_flank>CATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTTTACTATAGGAAGACGAACAGTCAGACGAATTCGAATGGTATCCATCCGTTCGTCTTCAAGTCATTTATTCAGATGCAAATCTGGAACAGTGCCAATATAGTTTTCGATTTTCTCTTGGTACGAATACCATCTACAACCCTGGTCACTTCATTTTGTACCTCATTGCGACCTGGTAATTTTGCTCCATTTTTTGTTGCCGGTCTCTATTTCACTTTCTATTTATCTCAAATGTTCACAGTCCTATTCTGTTTCATGAGAGTTCTGATTCTATTCAGTCCAAGAAATCACAACCAGGTATTTCTAGATTTATAATTAATCACTTCTCATGAGACCAAAAAGATTTACCAGTTGTGTACGATGTCTTTCTTGTTTTGGTCTCCTGCCGCCTACGTCCTCAGTTCAGTGACGTCATTTTCTCATGTTGTTAGTGATTTGGTATGTCTGCAATTTGATGTTCCTTATCAAGACGGAGCCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCAT</canonical>
            <polymorphic>ACTTTACTATAGGAAGACGAACAGTCAGACGAATTCGAATGGTATCCATCCGTTCGTCTTCAAGTCATTTATTCAGATGCAAATCTGGAACAGTGCCAATATAGTTTTCGATTTTCTCTTGGTACGAATACCATCTACAACCCTGGTCACTTCATTTTGTACCTCATTGCGACCTGGTAATTTTGCTCCATTTTTTGTTGCCGGTCTCTATTTCACTTTCTATTTATCTCAAATGTTCACAGTCCTATTCTGTTTCATGAGAGTTCTGATTCTATTCAGTCCAAGAAATCACAACCAGGTATTTCTAGATTTATAATTAATCACTTCTCATGAGACCAAAAAGATTTACCAGTTGTGTACGATGTCTTTCTTGTTTTGGTCTCCTGCCGCCTACGTCCTCAGTTCAGTGACGTCATTTTCTCATGTTGTTAGTGATTTGGTATGTCTGCAATTTGATGTTCCTTATCAAGACGGAGCCATCGCTATATCATCTACTTTCMCATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>221 134 95 66 66 60 54 52 52 37 34 32 25 24 14 12 10 10 2</canonical_bands>
                <polymorphic_bands>221 134 95 80 66 60 54 52 52 37 34 32 25 24 12 10 10 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCATGTTGTTAGTGATTTGGTA</pcr_primer_p1>
		<pcr_primer_p2>ATTCTAACATCAACTTCCTATGC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTCATGTTGTTAGTGATTTGGTATGTCTGCAATTTGATGTTCCTTATCAAGACGGAGCCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAAT</canonical_amplicon>
		<polymorphic_amplicon>CTCATGTTGTTAGTGATTTGGTATGTCTGCAATTTGATGTTCCTTATCAAGACGGAGCCATCGCTATATCATCTACTTTCMCATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39304</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>689840</contig_pos>
        <strand>+</strand>
        <context>ATTCTGGAAA[C/G]CTTTGWTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAA</left_flank>
        <right_flank>CTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCATCCGTTCGTCTTCAAGTCATTTATTCAGATGCAAATCTGGAACAGTGCCAATATAGTTTTCGATTTTCTCTTGGTACGAATACCATCTACAACCCTGGTCACTTCATTTTGTACCTCATTGCGACCTGGTAATTTTGCTCCATTTTTTGTTGCCGGTCTCTATTTCACTTTCTATTTATCTCAAATGTTCACAGTCCTATTCTGTTTCATGAGAGTTCTGATTCTATTCAGTCCAAGAAATCACAACCAGGTATTTCTAGATTTATAATTAATCACTTCTCATGAGACCAAAAAGATTTACCAGTTGTGTACGATGTCTTTCTTGTTTTGGTCTCCTGCCGCCTACGTCCTCAGTTCAGTGACGTCATTTTCTCATGTTGTTAGTGATTTGGTATGTCTGCAATTTGATGTTCCTTATCAAGACGGAGCCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTAC</canonical>
            <polymorphic>TCCATCCGTTCGTCTTCAAGTCATTTATTCAGATGCAAATCTGGAACAGTGCCAATATAGTTTTCGATTTTCTCTTGGTACGAATACCATCTACAACCCTGGTCACTTCATTTTGTACCTCATTGCGACCTGGTAATTTTGCTCCATTTTTTGTTGCCGGTCTCTATTTCACTTTCTATTTATCTCAAATGTTCACAGTCCTATTCTGTTTCATGAGAGTTCTGATTCTATTCAGTCCAAGAAATCACAACCAGGTATTTCTAGATTTATAATTAATCACTTCTCATGAGACCAAAAAGATTTACCAGTTGTGTACGATGTCTTTCTTGTTTTGGTCTCCTGCCGCCTACGTCCTCAGTTCAGTGACGTCATTTTCTCATGTTGTTAGTGATTTGGTATGTCTGCAATTTGATGTTCCTTATCAAGACGGAGCCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAASCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATCGCTATATCATCTACTTTC</pcr_primer_p1>
		<pcr_primer_p2>GAGATGTTGTACTCCTGAAACTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTC</canonical_amplicon>
		<polymorphic_amplicon>CCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAASCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39305</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>689846</contig_pos>
        <strand>+</strand>
        <context>GAAASCTTTG[A/T]TTTCAGAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTG</left_flank>
        <right_flank>TTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTTCGTCTTCAAGTCATTTATTCAGATGCAAATCTGGAACAGTGCCAATATAGTTTTCGATTTTCTCTTGGTACGAATACCATCTACAACCCTGGTCACTTCATTTTGTACCTCATTGCGACCTGGTAATTTTGCTCCATTTTTTGTTGCCGGTCTCTATTTCACTTTCTATTTATCTCAAATGTTCACAGTCCTATTCTGTTTCATGAGAGTTCTGATTCTATTCAGTCCAAGAAATCACAACCAGGTATTTCTAGATTTATAATTAATCACTTCTCATGAGACCAAAAAGATTTACCAGTTGTGTACGATGTCTTTCTTGTTTTGGTCTCCTGCCGCCTACGTCCTCAGTTCAGTGACGTCATTTTCTCATGTTGTTAGTGATTTGGTATGTCTGCAATTTGATGTTCCTTATCAAGACGGAGCCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTT</canonical>
            <polymorphic>CGTTCGTCTTCAAGTCATTTATTCAGATGCAAATCTGGAACAGTGCCAATATAGTTTTCGATTTTCTCTTGGTACGAATACCATCTACAACCCTGGTCACTTCATTTTGTACCTCATTGCGACCTGGTAATTTTGCTCCATTTTTTGTTGCCGGTCTCTATTTCACTTTCTATTTATCTCAAATGTTCACAGTCCTATTCTGTTTCATGAGAGTTCTGATTCTATTCAGTCCAAGAAATCACAACCAGGTATTTCTAGATTTATAATTAATCACTTCTCATGAGACCAAAAAGATTTACCAGTTGTGTACGATGTCTTTCTTGTTTTGGTCTCCTGCCGCCTACGTCCTCAGTTCAGTGACGTCATTTTCTCATGTTGTTAGTGATTTGGTATGTCTGCAATTTGATGTTCCTTATCAAGACGGAGCCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGWTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATCGCTATATCATCTACTTTC</pcr_primer_p1>
		<pcr_primer_p2>GAGATGTTGTACTCCTGAAACTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTC</canonical_amplicon>
		<polymorphic_amplicon>CCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGWTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39306</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>689869</contig_pos>
        <strand>+</strand>
        <context>CTCAATTTAG[C/G]ACACTTGATA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAG</left_flank>
        <right_flank>ACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAG</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGATGCAAATCTGGAACAGTGCCAATATAGTTTTCGATTTTCTCTTGGTACGAATACCATCTACAACCCTGGTCACTTCATTTTGTACCTCATTGCGACCTGGTAATTTTGCTCCATTTTTTGTTGCCGGTCTCTATTTCACTTTCTATTTATCTCAAATGTTCACAGTCCTATTCTGTTTCATGAGAGTTCTGATTCTATTCAGTCCAAGAAATCACAACCAGGTATTTCTAGATTTATAATTAATCACTTCTCATGAGACCAAAAAGATTTACCAGTTGTGTACGATGTCTTTCTTGTTTTGGTCTCCTGCCGCCTACGTCCTCAGTTCAGTGACGTCATTTTCTCATGTTGTTAGTGATTTGGTATGTCTGCAATTTGATGTTCCTTATCAAGACGGAGCCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCT</canonical>
            <polymorphic>CAGATGCAAATCTGGAACAGTGCCAATATAGTTTTCGATTTTCTCTTGGTACGAATACCATCTACAACCCTGGTCACTTCATTTTGTACCTCATTGCGACCTGGTAATTTTGCTCCATTTTTTGTTGCCGGTCTCTATTTCACTTTCTATTTATCTCAAATGTTCACAGTCCTATTCTGTTTCATGAGAGTTCTGATTCTATTCAGTCCAAGAAATCACAACCAGGTATTTCTAGATTTATAATTAATCACTTCTCATGAGACCAAAAAGATTTACCAGTTGTGTACGATGTCTTTCTTGTTTTGGTCTCCTGCCGCCTACGTCCTCAGTTCAGTGACGTCATTTTCTCATGTTGTTAGTGATTTGGTATGTCTGCAATTTGATGTTCCTTATCAAGACGGAGCCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGSACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>221 134 66 66 60 54 52 52 52 37 34 32 31 25 24 22 14 12 10 2</canonical_bands>
                <polymorphic_bands>221 134 66 66 62 54 52 52 52 37 34 32 31 25 24 22 14 12 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATCGCTATATCATCTACTTTC</pcr_primer_p1>
		<pcr_primer_p2>GAGATGTTGTACTCCTGAAACTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTC</canonical_amplicon>
		<polymorphic_amplicon>CCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGSACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39307</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>689922</contig_pos>
        <strand>+</strand>
        <context>TAGTACAGTG[A/G]CAATGTTAAY</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTG</left_flank>
        <right_flank>CAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAA</right_flank>
        <qual_score>146</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATACCATCTACAACCCTGGTCACTTCATTTTGTACCTCATTGCGACCTGGTAATTTTGCTCCATTTTTTGTTGCCGGTCTCTATTTCACTTTCTATTTATCTCAAATGTTCACAGTCCTATTCTGTTTCATGAGAGTTCTGATTCTATTCAGTCCAAGAAATCACAACCAGGTATTTCTAGATTTATAATTAATCACTTCTCATGAGACCAAAAAGATTTACCAGTTGTGTACGATGTCTTTCTTGTTTTGGTCTCCTGCCGCCTACGTCCTCAGTTCAGTGACGTCATTTTCTCATGTTGTTAGTGATTTGGTATGTCTGCAATTTGATGTTCCTTATCAAGACGGAGCCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTC</canonical>
            <polymorphic>AATACCATCTACAACCCTGGTCACTTCATTTTGTACCTCATTGCGACCTGGTAATTTTGCTCCATTTTTTGTTGCCGGTCTCTATTTCACTTTCTATTTATCTCAAATGTTCACAGTCCTATTCTGTTTCATGAGAGTTCTGATTCTATTCAGTCCAAGAAATCACAACCAGGTATTTCTAGATTTATAATTAATCACTTCTCATGAGACCAAAAAGATTTACCAGTTGTGTACGATGTCTTTCTTGTTTTGGTCTCCTGCCGCCTACGTCCTCAGTTCAGTGACGTCATTTTCTCATGTTGTTAGTGATTTGGTATGTCTGCAATTTGATGTTCCTTATCAAGACGGAGCCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGRCAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNAC</site>
                <isoschizomers>
                    <enzyme>MaeIII</enzyme>
                </isoschizomers>
                <canonical_bands>435 261 204 69 19 12</canonical_bands>
                <polymorphic_bands>447 261 204 69 19</polymorphic_bands>
            </assay>
            <assay>
                <site>GTSAC</site>
                <isoschizomers>
                    <enzyme>NmuCI</enzyme>
                    <enzyme>Tsp45I</enzyme>
                </isoschizomers>
                <canonical_bands>504 261 204 19 12</canonical_bands>
                <polymorphic_bands>516 261 204 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATCGCTATATCATCTACTTTC</pcr_primer_p1>
		<pcr_primer_p2>GAGATGTTGTACTCCTGAAACTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTC</canonical_amplicon>
		<polymorphic_amplicon>CCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGRCAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39308</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>689932</contig_pos>
        <strand>+</strand>
        <context>RCAATGTTAA[C/T]AAAACTGCGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAA</left_flank>
        <right_flank>AAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGAT</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAACCCTGGTCACTTCATTTTGTACCTCATTGCGACCTGGTAATTTTGCTCCATTTTTTGTTGCCGGTCTCTATTTCACTTTCTATTTATCTCAAATGTTCACAGTCCTATTCTGTTTCATGAGAGTTCTGATTCTATTCAGTCCAAGAAATCACAACCAGGTATTTCTAGATTTATAATTAATCACTTCTCATGAGACCAAAAAGATTTACCAGTTGTGTACGATGTCTTTCTTGTTTTGGTCTCCTGCCGCCTACGTCCTCAGTTCAGTGACGTCATTTTCTCATGTTGTTAGTGATTTGGTATGTCTGCAATTTGATGTTCCTTATCAAGACGGAGCCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGA</canonical>
            <polymorphic>ACAACCCTGGTCACTTCATTTTGTACCTCATTGCGACCTGGTAATTTTGCTCCATTTTTTGTTGCCGGTCTCTATTTCACTTTCTATTTATCTCAAATGTTCACAGTCCTATTCTGTTTCATGAGAGTTCTGATTCTATTCAGTCCAAGAAATCACAACCAGGTATTTCTAGATTTATAATTAATCACTTCTCATGAGACCAAAAAGATTTACCAGTTGTGTACGATGTCTTTCTTGTTTTGGTCTCCTGCCGCCTACGTCCTCAGTTCAGTGACGTCATTTTCTCATGTTGTTAGTGATTTGGTATGTCTGCAATTTGATGTTCCTTATCAAGACGGAGCCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAAYAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTTAAC</site>
                <isoschizomers>
                    <enzyme>BstHPI</enzyme>
                    <enzyme>HpaI</enzyme>
                    <enzyme>KspAI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>503 276 120 101</canonical_bands>
                <polymorphic_bands>779 120 101</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCATCGCTATATCATCTACTTTC</pcr_primer_p1>
		<pcr_primer_p2>GAGATGTTGTACTCCTGAAACTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTC</canonical_amplicon>
		<polymorphic_amplicon>CCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAAYAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39309</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>690132</contig_pos>
        <strand>+</strand>
        <context>TAAGGGGGGA[A/C]WCTGACCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGA</left_flank>
        <right_flank>TCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAAAGATTTACCAGTTGTGTACGATGTCTTTCTTGTTTTGGTCTCCTGCCGCCTACGTCCTCAGTTCAGTGACGTCATTTTCTCATGTTGTTAGTGATTTGGTATGTCTGCAATTTGATGTTCCTTATCAAGACGGAGCCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCCTCTTTCAAAATTTTAATTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTGATCTGTTGTTTTCAAACTTCGTTTTTTCGAACGGGGTAAAAGCGAGGAAGCTGTCGTTTTATTGGTGGGGTTTAATAAAGTCTACACCCAAACGGAGATCA</canonical>
            <polymorphic>CAAAAAGATTTACCAGTTGTGTACGATGTCTTTCTTGTTTTGGTCTCCTGCCGCCTACGTCCTCAGTTCAGTGACGTCATTTTCTCATGTTGTTAGTGATTTGGTATGTCTGCAATTTGATGTTCCTTATCAAGACGGAGCCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAMTCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCCTCTTTCAAAATTTTAATTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTGATCTGTTGTTTTCAAACTTCGTTTTTTCGAACGGGGTAAAAGCGAGGAAGCTGTCGTTTTATTGGTGGGGTTTAATAAAGTCTACACCCAAACGGAGATCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>502 270 180 48</canonical_bands>
                <polymorphic_bands>550 270 180</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTTTCAGGAGTACAACATCTC</pcr_primer_p1>
		<pcr_primer_p2>TTTAATTTTAAACTGCGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAA</canonical_amplicon>
		<polymorphic_amplicon>GAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAMTCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39310</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>690133</contig_pos>
        <strand>+</strand>
        <context>AAGGGGGGAM[A/T]CTGACCAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAA</left_flank>
        <right_flank>CTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTAC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAGATTTACCAGTTGTGTACGATGTCTTTCTTGTTTTGGTCTCCTGCCGCCTACGTCCTCAGTTCAGTGACGTCATTTTCTCATGTTGTTAGTGATTTGGTATGTCTGCAATTTGATGTTCCTTATCAAGACGGAGCCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCCTCTTTCAAAATTTTAATTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTGATCTGTTGTTTTCAAACTTCGTTTTTTCGAACGGGGTAAAAGCGAGGAAGCTGTCGTTTTATTGGTGGGGTTTAATAAAGTCTACACCCAAACGGAGATCAT</canonical>
            <polymorphic>AAAAAGATTTACCAGTTGTGTACGATGTCTTTCTTGTTTTGGTCTCCTGCCGCCTACGTCCTCAGTTCAGTGACGTCATTTTCTCATGTTGTTAGTGATTTGGTATGTCTGCAATTTGATGTTCCTTATCAAGACGGAGCCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAAWCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCCTCTTTCAAAATTTTAATTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTGATCTGTTGTTTTCAAACTTCGTTTTTTCGAACGGGGTAAAAGCGAGGAAGCTGTCGTTTTATTGGTGGGGTTTAATAAAGTCTACACCCAAACGGAGATCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>503 269 180 48</canonical_bands>
                <polymorphic_bands>551 269 180</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>315 218 156 128 122 61</canonical_bands>
                <polymorphic_bands>315 218 217 128 122</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 269 180 48</canonical_bands>
                <polymorphic_bands>551 269 180</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTTTCAGGAGTACAACATCTC</pcr_primer_p1>
		<pcr_primer_p2>TTTAATTTTAAACTGCGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAA</canonical_amplicon>
		<polymorphic_amplicon>GAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAAWCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39311</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>690145</contig_pos>
        <strand>+</strand>
        <context>TGACCAAATA[A/G]TTTTATTGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATA</left_flank>
        <right_flank>TTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGTTGTGTACGATGTCTTTCTTGTTTTGGTCTCCTGCCGCCTACGTCCTCAGTTCAGTGACGTCATTTTCTCATGTTGTTAGTGATTTGGTATGTCTGCAATTTGATGTTCCTTATCAAGACGGAGCCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCCTCTTTCAAAATTTTAATTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTGATCTGTTGTTTTCAAACTTCGTTTTTTCGAACGGGGTAAAAGCGAGGAAGCTGTCGTTTTATTGGTGGGGTTTAATAAAGTCTACACCCAAACGGAGATCATTCTCCACTTTCC</canonical>
            <polymorphic>CAGTTGTGTACGATGTCTTTCTTGTTTTGGTCTCCTGCCGCCTACGTCCTCAGTTCAGTGACGTCATTTTCTCATGTTGTTAGTGATTTGGTATGTCTGCAATTTGATGTTCCTTATCAAGACGGAGCCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATARTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCCTCTTTCAAAATTTTAATTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTGATCTGTTGTTTTCAAACTTCGTTTTTTCGAACGGGGTAAAAGCGAGGAAGCTGTCGTTTTATTGGTGGGGTTTAATAAAGTCTACACCCAAACGGAGATCATTCTCCACTTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 349 149</canonical_bands>
                <polymorphic_bands>651 349</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGTTTCAGGAGTACAACATCTC</pcr_primer_p1>
		<pcr_primer_p2>TTTAATTTTAAACTGCGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>GAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAA</canonical_amplicon>
		<polymorphic_amplicon>GAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATARTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39312</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>690200</contig_pos>
        <strand></strand>
        <context>AAGTTCAGAA[A/C]AAAATCCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAA</left_flank>
        <right_flank>AAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGTGACGTCATTTTCTCATGTTGTTAGTGATTTGGTATGTCTGCAATTTGATGTTCCTTATCAAGACGGAGCCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCCTCTTTCAAAATTTTAATTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTGATCTGTTGTTTTCAAACTTCGTTTTTTCGAACGGGGTAAAAGCGAGGAAGCTGTCGTTTTATTGGTGGGGTTTAATAAAGTCTACACCCAAACGGAGATCATTCTCCACTTTCCGTGTAGTGAGATATGCCCACCGTTTTTGCCCCTAACAATTTCCATTTTCGGACTG</canonical>
            <polymorphic>CAGTGACGTCATTTTCTCATGTTGTTAGTGATTTGGTATGTCTGCAATTTGATGTTCCTTATCAAGACGGAGCCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAMAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCCTCTTTCAAAATTTTAATTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTGATCTGTTGTTTTCAAACTTCGTTTTTTCGAACGGGGTAAAAGCGAGGAAGCTGTCGTTTTATTGGTGGGGTTTAATAAAGTCTACACCCAAACGGAGATCATTCTCCACTTTCCGTGTAGTGAGATATGCCCACCGTTTTTGCCCCTAACAATTTCCATTTTCGGACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTTTCAGGAGTACAACATCTC</pcr_primer_p1>
		<pcr_primer_p2>CCTATTCGCAACCTATTTAATTT</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>GAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGG</canonical_amplicon>
		<polymorphic_amplicon>GAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAMAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39313</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>690264</contig_pos>
        <strand>+</strand>
        <context>GGACGAGGAA[C/T]TGAGYTCCCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAA</left_flank>
        <right_flank>TGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGACGGAGCCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCCTCTTTCAAAATTTTAATTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTGATCTGTTGTTTTCAAACTTCGTTTTTTCGAACGGGGTAAAAGCGAGGAAGCTGTCGTTTTATTGGTGGGGTTTAATAAAGTCTACACCCAAACGGAGATCATTCTCCACTTTCCGTGTAGTGAGATATGCCCACCGTTTTTGCCCCTAACAATTTCCATTTTCGGACTGCCATTTTATATTTGCTTCTATCTGATCTTAAATTAGCTGAAATCGATCGCCAATTAGTGGAGAT</canonical>
            <polymorphic>AGACGGAGCCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAAYTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCCTCTTTCAAAATTTTAATTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTGATCTGTTGTTTTCAAACTTCGTTTTTTCGAACGGGGTAAAAGCGAGGAAGCTGTCGTTTTATTGGTGGGGTTTAATAAAGTCTACACCCAAACGGAGATCATTCTCCACTTTCCGTGTAGTGAGATATGCCCACCGTTTTTGCCCCTAACAATTTCCATTTTCGGACTGCCATTTTATATTTGCTTCTATCTGATCTTAAATTAGCTGAAATCGATCGCCAATTAGTGGAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTCTGTCGGTATGTTGTTAAG</pcr_primer_p1>
		<pcr_primer_p2>CGGAGATCAAAGCAGTAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCG</canonical_amplicon>
		<polymorphic_amplicon>AATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAAYTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39314</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>690269</contig_pos>
        <strand>+</strand>
        <context>AGGAAYTGAG[C/T]TCCCGCGCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAG</left_flank>
        <right_flank>TCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGCCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCCTCTTTCAAAATTTTAATTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTGATCTGTTGTTTTCAAACTTCGTTTTTTCGAACGGGGTAAAAGCGAGGAAGCTGTCGTTTTATTGGTGGGGTTTAATAAAGTCTACACCCAAACGGAGATCATTCTCCACTTTCCGTGTAGTGAGATATGCCCACCGTTTTTGCCCCTAACAATTTCCATTTTCGGACTGCCATTTTATATTTGCTTCTATCTGATCTTAAATTAGCTGAAATCGATCGCCAATTAGTGGAGATTAACA</canonical>
            <polymorphic>GAGCCATCGCTATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGYTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCCTCTTTCAAAATTTTAATTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTGATCTGTTGTTTTCAAACTTCGTTTTTTCGAACGGGGTAAAAGCGAGGAAGCTGTCGTTTTATTGGTGGGGTTTAATAAAGTCTACACCCAAACGGAGATCATTCTCCACTTTCCGTGTAGTGAGATATGCCCACCGTTTTTGCCCCTAACAATTTCCATTTTCGGACTGCCATTTTATATTTGCTTCTATCTGATCTTAAATTAGCTGAAATCGATCGCCAATTAGTGGAGATTAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCTGTCGGTATGTTGTTAAG</pcr_primer_p1>
		<pcr_primer_p2>CGGAGATCAAAGCAGTAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCG</canonical_amplicon>
		<polymorphic_amplicon>AATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGYTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39315</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>690280</contig_pos>
        <strand>+</strand>
        <context>TCCCGCGCAA[C/T]GAAAMACCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAA</left_flank>
        <right_flank>GAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTC</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCCTCTTTCAAAATTTTAATTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTGATCTGTTGTTTTCAAACTTCGTTTTTTCGAACGGGGTAAAAGCGAGGAAGCTGTCGTTTTATTGGTGGGGTTTAATAAAGTCTACACCCAAACGGAGATCATTCTCCACTTTCCGTGTAGTGAGATATGCCCACCGTTTTTGCCCCTAACAATTTCCATTTTCGGACTGCCATTTTATATTTGCTTCTATCTGATCTTAAATTAGCTGAAATCGATCGCCAATTAGTGGAGATTAACAACGCTGATGTA</canonical>
            <polymorphic>ATATCATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAAYGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCCTCTTTCAAAATTTTAATTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTGATCTGTTGTTTTCAAACTTCGTTTTTTCGAACGGGGTAAAAGCGAGGAAGCTGTCGTTTTATTGGTGGGGTTTAATAAAGTCTACACCCAAACGGAGATCATTCTCCACTTTCCGTGTAGTGAGATATGCCCACCGTTTTTGCCCCTAACAATTTCCATTTTCGGACTGCCATTTTATATTTGCTTCTATCTGATCTTAAATTAGCTGAAATCGATCGCCAATTAGTGGAGATTAACAACGCTGATGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCTGTCGGTATGTTGTTAAG</pcr_primer_p1>
		<pcr_primer_p2>CGGAGATCAAAGCAGTAAGAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>AATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCG</canonical_amplicon>
		<polymorphic_amplicon>AATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAAYGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39316</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>690285</contig_pos>
        <strand>+</strand>
        <context>CGCAAYGAAA[A/C]ACCTAGGYCA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAA</left_flank>
        <right_flank>ACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCCTCTTTCAAAATTTTAATTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTGATCTGTTGTTTTCAAACTTCGTTTTTTCGAACGGGGTAAAAGCGAGGAAGCTGTCGTTTTATTGGTGGGGTTTAATAAAGTCTACACCCAAACGGAGATCATTCTCCACTTTCCGTGTAGTGAGATATGCCCACCGTTTTTGCCCCTAACAATTTCCATTTTCGGACTGCCATTTTATATTTGCTTCTATCTGATCTTAAATTAGCTGAAATCGATCGCCAATTAGTGGAGATTAACAACGCTGATGTACCCTT</canonical>
            <polymorphic>ATCTACTTTCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAAMACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCCTCTTTCAAAATTTTAATTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTGATCTGTTGTTTTCAAACTTCGTTTTTTCGAACGGGGTAAAAGCGAGGAAGCTGTCGTTTTATTGGTGGGGTTTAATAAAGTCTACACCCAAACGGAGATCATTCTCCACTTTCCGTGTAGTGAGATATGCCCACCGTTTTTGCCCCTAACAATTTCCATTTTCGGACTGCCATTTTATATTTGCTTCTATCTGATCTTAAATTAGCTGAAATCGATCGCCAATTAGTGGAGATTAACAACGCTGATGTACCCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>221 134 121 95 73 69 60 37 31 26 22 19 14 13 12 11 11 10 9 5 5 2</canonical_bands>
                <polymorphic_bands>252 134 121 95 73 69 60 37 26 22 19 14 13 12 11 11 10 9 5 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTAAATAGGTTGCGAATAGG</pcr_primer_p1>
		<pcr_primer_p2>GGACACTGACCAAAAAGTTATAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCC</canonical_amplicon>
		<polymorphic_amplicon>AAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAAMACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39317</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>690293</contig_pos>
        <strand>+</strand>
        <context>AAMACCTAGG[C/T]CATGGCGACA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGG</left_flank>
        <right_flank>CATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCCTCTTTCAAAATTTTAATTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTGATCTGTTGTTTTCAAACTTCGTTTTTTCGAACGGGGTAAAAGCGAGGAAGCTGTCGTTTTATTGGTGGGGTTTAATAAAGTCTACACCCAAACGGAGATCATTCTCCACTTTCCGTGTAGTGAGATATGCCCACCGTTTTTGCCCCTAACAATTTCCATTTTCGGACTGCCATTTTATATTTGCTTCTATCTGATCTTAAATTAGCTGAAATCGATCGCCAATTAGTGGAGATTAACAACGCTGATGTACCCTTTCAAACCA</canonical>
            <polymorphic>TCACATTTGGGAATGTGGGTTGAATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGYCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCCTCTTTCAAAATTTTAATTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTGATCTGTTGTTTTCAAACTTCGTTTTTTCGAACGGGGTAAAAGCGAGGAAGCTGTCGTTTTATTGGTGGGGTTTAATAAAGTCTACACCCAAACGGAGATCATTCTCCACTTTCCGTGTAGTGAGATATGCCCACCGTTTTTGCCCCTAACAATTTCCATTTTCGGACTGCCATTTTATATTTGCTTCTATCTGATCTTAAATTAGCTGAAATCGATCGCCAATTAGTGGAGATTAACAACGCTGATGTACCCTTTCAAACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTAAATAGGTTGCGAATAGG</pcr_primer_p1>
		<pcr_primer_p2>GGACACTGACCAAAAAGTTATAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCC</canonical_amplicon>
		<polymorphic_amplicon>AAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGYCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39318</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>690316</contig_pos>
        <strand>+</strand>
        <context>ACGCCTTTTG[C/T]ACRTGGCATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTG</left_flank>
        <right_flank>ACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCCTCTTTCAAAATTTTAATTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTGATCTGTTGTTTTCAAACTTCGTTTTTTCGAACGGGGTAAAAGCGAGGAAGCTGTCGTTTTATTGGTGGGGTTTAATAAAGTCTACACCCAAACGGAGATCATTCTCCACTTTCCGTGTAGTGAGATATGCCCACCGTTTTTGCCCCTAACAATTTCCATTTTCGGACTGCCATTTTATATTTGCTTCTATCTGATCTTAAATTAGCTGAAATCGATCGCCAATTAGTGGAGATTAACAACGCTGATGTACCCTTTCAAACCACTATCACAACCTGGATTCATCAT</canonical>
            <polymorphic>ATTGTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGYACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCCTCTTTCAAAATTTTAATTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTGATCTGTTGTTTTCAAACTTCGTTTTTTCGAACGGGGTAAAAGCGAGGAAGCTGTCGTTTTATTGGTGGGGTTTAATAAAGTCTACACCCAAACGGAGATCATTCTCCACTTTCCGTGTAGTGAGATATGCCCACCGTTTTTGCCCCTAACAATTTCCATTTTCGGACTGCCATTTTATATTTGCTTCTATCTGATCTTAAATTAGCTGAAATCGATCGCCAATTAGTGGAGATTAACAACGCTGATGTACCCTTTCAAACCACTATCACAACCTGGATTCATCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>221 134 121 95 73 69 54 37 34 31 22 19 17 13 12 11 10 9 6 5 5 2</canonical_bands>
                <polymorphic_bands>221 134 121 100 95 73 54 37 34 22 19 17 13 12 11 10 9 6 5 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTAAATAGGTTGCGAATAGG</pcr_primer_p1>
		<pcr_primer_p2>GGACACTGACCAAAAAGTTATAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCC</canonical_amplicon>
		<polymorphic_amplicon>AAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGYACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39319</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>690319</contig_pos>
        <strand>+</strand>
        <context>CCTTTTGYAC[A/G]TGGCATTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCAC</left_flank>
        <right_flank>TGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCCTCTTTCAAAATTTTAATTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTGATCTGTTGTTTTCAAACTTCGTTTTTTCGAACGGGGTAAAAGCGAGGAAGCTGTCGTTTTATTGGTGGGGTTTAATAAAGTCTACACCCAAACGGAGATCATTCTCCACTTTCCGTGTAGTGAGATATGCCCACCGTTTTTGCCCCTAACAATTTCCATTTTCGGACTGCCATTTTATATTTGCTTCTATCTGATCTTAAATTAGCTGAAATCGATCGCCAATTAGTGGAGATTAACAACGCTGATGTACCCTTTCAAACCACTATCACAACCTGGATTCATCATTTT</canonical>
            <polymorphic>GTTTCGGGATATTCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACRTGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCCTCTTTCAAAATTTTAATTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTGATCTGTTGTTTTCAAACTTCGTTTTTTCGAACGGGGTAAAAGCGAGGAAGCTGTCGTTTTATTGGTGGGGTTTAATAAAGTCTACACCCAAACGGAGATCATTCTCCACTTTCCGTGTAGTGAGATATGCCCACCGTTTTTGCCCCTAACAATTTCCATTTTCGGACTGCCATTTTATATTTGCTTCTATCTGATCTTAAATTAGCTGAAATCGATCGCCAATTAGTGGAGATTAACAACGCTGATGTACCCTTTCAAACCACTATCACAACCTGGATTCATCATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>501 475 24</canonical_bands>
                <polymorphic_bands>525 475</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTAAATAGGTTGCGAATAGG</pcr_primer_p1>
		<pcr_primer_p2>GGACACTGACCAAAAAGTTATAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCC</canonical_amplicon>
		<polymorphic_amplicon>AAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACRTGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39320</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>690331</contig_pos>
        <strand>+</strand>
        <context>GGCATTTTTC[C/T]GGATCTTACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTC</left_flank>
        <right_flank>GGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCCTCTTTCAAAATTTTAATTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTGATCTGTTGTTTTCAAACTTCGTTTTTTCGAACGGGGTAAAAGCGAGGAAGCTGTCGTTTTATTGGTGGGGTTTAATAAAGTCTACACCCAAACGGAGATCATTCTCCACTTTCCGTGTAGTGAGATATGCCCACCGTTTTTGCCCCTAACAATTTCCATTTTCGGACTGCCATTTTATATTTGCTTCTATCTGATCTTAAATTAGCTGAAATCGATCGCCAATTAGTGGAGATTAACAACGCTGATGTACCCTTTCAAACCACTATCACAACCTGGATTCATCATTTTGAAAAAGCAGAA</canonical>
            <polymorphic>TCTGGAAACCTTTGTTTTCAGAAAGCCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCYGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCCTCTTTCAAAATTTTAATTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTGATCTGTTGTTTTCAAACTTCGTTTTTTCGAACGGGGTAAAAGCGAGGAAGCTGTCGTTTTATTGGTGGGGTTTAATAAAGTCTACACCCAAACGGAGATCATTCTCCACTTTCCGTGTAGTGAGATATGCCCACCGTTTTTGCCCCTAACAATTTCCATTTTCGGACTGCCATTTTATATTTGCTTCTATCTGATCTTAAATTAGCTGAAATCGATCGCCAATTAGTGGAGATTAACAACGCTGATGTACCCTTTCAAACCACTATCACAACCTGGATTCATCATTTTGAAAAAGCAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTAAATAGGTTGCGAATAGG</pcr_primer_p1>
		<pcr_primer_p2>GGACACTGACCAAAAAGTTATAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCC</canonical_amplicon>
		<polymorphic_amplicon>AAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCYGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39321</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>690356</contig_pos>
        <strand>+</strand>
        <context>TGATCTCCGT[C/T]ACGTAAAAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGT</left_flank>
        <right_flank>ACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCCTCTTTCAAAATTTTAATTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTGATCTGTTGTTTTCAAACTTCGTTTTTTCGAACGGGGTAAAAGCGAGGAAGCTGTCGTTTTATTGGTGGGGTTTAATAAAGTCTACACCCAAACGGAGATCATTCTCCACTTTCCGTGTAGTGAGATATGCCCACCGTTTTTGCCCCTAACAATTTCCATTTTCGGACTGCCATTTTATATTTGCTTCTATCTGATCTTAAATTAGCTGAAATCGATCGCCAATTAGTGGAGATTAACAACGCTGATGTACCCTTTCAAACCACTATCACAACCTGGATTCATCATTTTGAAAAAGCAGAATTCTCGTTGGACGAAAATCCCCTTT</canonical>
            <polymorphic>CCCTCAATTTAGCACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTYACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCCTCTTTCAAAATTTTAATTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTGATCTGTTGTTTTCAAACTTCGTTTTTTCGAACGGGGTAAAAGCGAGGAAGCTGTCGTTTTATTGGTGGGGTTTAATAAAGTCTACACCCAAACGGAGATCATTCTCCACTTTCCGTGTAGTGAGATATGCCCACCGTTTTTGCCCCTAACAATTTCCATTTTCGGACTGCCATTTTATATTTGCTTCTATCTGATCTTAAATTAGCTGAAATCGATCGCCAATTAGTGGAGATTAACAACGCTGATGTACCCTTTCAAACCACTATCACAACCTGGATTCATCATTTTGAAAAAGCAGAATTCTCGTTGGACGAAAATCCCCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TACGTA</site>
                <isoschizomers>
                    <enzyme>BstSNI</enzyme>
                    <enzyme>Eco105I</enzyme>
                    <enzyme>SnaBI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAATTAAATAGGTTGCGAATAGG</pcr_primer_p1>
		<pcr_primer_p2>GGACACTGACCAAAAAGTTATAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCC</canonical_amplicon>
		<polymorphic_amplicon>AAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTYACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39322</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>690368</contig_pos>
        <strand>+</strand>
        <context>CGTAAAAACC[A/C]TAAAAACCGC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACC</left_flank>
        <right_flank>TAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCCTCTTTCAAAATTTTAATTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTGATCTGTTGTTTTCAAACTTCGTTTTTTCGAACGGGGTAAAAGCGAGGAAGCTGTCGTTTTATTGGTGGGGTTTAATAAAGTCTACACCCAAACGGAGATCATTCTCCACTTTCCGTGTAGTGAGATATGCCCACCGTTTTTGCCCCTAACAATTTCCATTTTCGGACTGCCATTTTATATTTGCTTCTATCTGATCTTAAATTAGCTGAAATCGATCGCCAATTAGTGGAGATTAACAACGCTGATGTACCCTTTCAAACCACTATCACAACCTGGATTCATCATTTTGAAAAAGCAGAATTCTCGTTGGACGAAAATCCCCTTTAAAAAAGGCGAA</canonical>
            <polymorphic>CACACTTGATATTTTCAACAACTATAGTACTTGGAATCGTGACTAGTACAGTGACAATGTTAACAAAACTGCGGCATAGGAAGTTGATGTTAGAATTTTAAAAACAAATCTGATTTTAAATTGAATATTGCGGAGTTTCAGGAGTACAACATCTCGACCGTTCCATCGATCAAAAGCAGAAGCTACACTGACCATCACAATGTTTATAATTATGATTCCAGATTTTTTCGCTCAAATTCTGTCGGTATGTTGTTAAGGGGGGAATCTGACCAAATATTTTTATTGGACCAAAATGTTCCGTATTTTCCAAATTACAAAAAAAAGTTCAGAAAAAAATCCAAAACCCCAGAAAAACGCAGTTTAAAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCMTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCCTCTTTCAAAATTTTAATTATTAGGTTGTTCGGAAAGTCCTTTCCATTTTTGATCTGTTGTTTTCAAACTTCGTTTTTTCGAACGGGGTAAAAGCGAGGAAGCTGTCGTTTTATTGGTGGGGTTTAATAAAGTCTACACCCAAACGGAGATCATTCTCCACTTTCCGTGTAGTGAGATATGCCCACCGTTTTTGCCCCTAACAATTTCCATTTTCGGACTGCCATTTTATATTTGCTTCTATCTGATCTTAAATTAGCTGAAATCGATCGCCAATTAGTGGAGATTAACAACGCTGATGTACCCTTTCAAACCACTATCACAACCTGGATTCATCATTTTGAAAAAGCAGAATTCTCGTTGGACGAAAATCCCCTTTAAAAAAGGCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTAAATAGGTTGCGAATAGG</pcr_primer_p1>
		<pcr_primer_p2>GGACACTGACCAAAAAGTTATAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCCTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCC</canonical_amplicon>
		<polymorphic_amplicon>AAATTAAATAGGTTGCGAATAGGGACGAGGAACTGAGTTCCCGCGCAATGAAACACCTAGGTCATGGCGACAGGACGCCTTTTGCACATGGCATTTTTCTGGATCTTACTGCTTTGATCTCCGTTACGTAAAAACCMTAAAAACCGCTGTCCGTGAGGCGGTCGGCCACCGTGGCCTAGGCGCGGGAACTCAATTCCTCGACCTATAACGACCTATAACGAGCAACCTATAACTTTTTGGTCAGTGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39323</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>755126</contig_pos>
        <strand>+</strand>
        <context>AAAGAATTTC[A/C]TTTTCATTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTTACAAGTAAAAGTAGAATAATAACTACACCTGATGAAAAAGAATTTC</left_flank>
        <right_flank>TTTTCATTTTTGAAATTCTAAATATGAGAGAGAGAGAGAGTACACCTACA</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCGGAATGATAAAAGGATTCTGGACAGTGGTGAAGAAAAAATGAGACTAAGGAGCTTCCCAATTCTTTTAAAGTTGTCGAAGAAAATTCTAGAGAACAATTAGAGGAGATTTTTCGAAGTTTTCTTAGAGCTAAGGTATGCATTCTGACGTAACTGTCGCCCCACCTTTAATGTTTTTTAATCCCCCCCCCCCCCCCCTTTTTTTTTTGATTTTTTGATTTTTAAACCTGATGTAAAAGTTCTACTTTTAAAGAATTGGAACAGCTGAAACTGCCGAAAATGTCTTGCAATTATAAATACGGGACTGACACAAACTTGAAAAATTCTGATTCACACACTTTTTTTCAGAATTTCCTTCCTAGATCAGAAAGGGTAGAAACCACGTTTTTGCGGTCTGGCGATGATCAGAAGATGTCATTTTTATGTAATGAGGAAGCAAAAACACATTTTTACAAGTAAAAGTAGAATAATAACTACACCTGATGAAAAAGAATTTCATTTTCATTTTTGAAATTCTAAATATGAGAGAGAGAGAGAGTACACCTACATAATTATAGACTAGAAAAATGAAAAGAAGGCAAAAGAGCAGAGATTGAATGACAAATATTATTTGAAATTTTGAATGTTGAACTTGGGTTAATTTGGTATTTTGTTTCAAATGATGTTACGATTTTTGTAAGCATTTTTTTGGTTGGAAGATGTGTCTATCGAAAACACTCTAGCGTCAACTTTGAGCCCATATATCTTATTCCCTGAAAGAGATATCAAAAACTAGTCAACTGAAAATTTTTATCATAAAAACTAAAAAATTGTTGTCAGTTGACGCATTATTCAAAAAGTCACTCGTGAAATCTGAAGAAGAAAGAATCTATAAACGTCTGAATTCTGGATCAAAAAATTGTTTCGGATTTATGAAATCGAAATTTAAAAAATCGAAACGAAACAGTTGTAAATATTATGAAATGCTATCTGAGTGATCACACGGATTGTAGAAAGCT</canonical>
            <polymorphic>ACTCGGAATGATAAAAGGATTCTGGACAGTGGTGAAGAAAAAATGAGACTAAGGAGCTTCCCAATTCTTTTAAAGTTGTCGAAGAAAATTCTAGAGAACAATTAGAGGAGATTTTTCGAAGTTTTCTTAGAGCTAAGGTATGCATTCTGACGTAACTGTCGCCCCACCTTTAATGTTTTTTAATCCCCCCCCCCCCCCCCTTTTTTTTTTGATTTTTTGATTTTTAAACCTGATGTAAAAGTTCTACTTTTAAAGAATTGGAACAGCTGAAACTGCCGAAAATGTCTTGCAATTATAAATACGGGACTGACACAAACTTGAAAAATTCTGATTCACACACTTTTTTTCAGAATTTCCTTCCTAGATCAGAAAGGGTAGAAACCACGTTTTTGCGGTCTGGCGATGATCAGAAGATGTCATTTTTATGTAATGAGGAAGCAAAAACACATTTTTACAAGTAAAAGTAGAATAATAACTACACCTGATGAAAAAGAATTTCMTTTTCATTTTTGAAATTCTAAATATGAGAGAGAGAGAGAGTACACCTACATAATTATAGACTAGAAAAATGAAAAGAAGGCAAAAGAGCAGAGATTGAATGACAAATATTATTTGAAATTTTGAATGTTGAACTTGGGTTAATTTGGTATTTTGTTTCAAATGATGTTACGATTTTTGTAAGCATTTTTTTGGTTGGAAGATGTGTCTATCGAAAACACTCTAGCGTCAACTTTGAGCCCATATATCTTATTCCCTGAAAGAGATATCAAAAACTAGTCAACTGAAAATTTTTATCATAAAAACTAAAAAATTGTTGTCAGTTGACGCATTATTCAAAAAGTCACTCGTGAAATCTGAAGAAGAAAGAATCTATAAACGTCTGAATTCTGGATCAAAAAATTGTTTCGGATTTATGAAATCGAAATTTAAAAAATCGAAACGAAACAGTTGTAAATATTATGAAATGCTATCTGAGTGATCACACGGATTGTAGAAAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTATGTAATGAGGAAGCAAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CGTAACATCATTTGAAACAAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTATGTAATGAGGAAGCAAAAACACATTTTTACAAGTAAAAGTAGAATAATAACTACACCTGATGAAAAAGAATTTCATTTTCATTTTTGAAATTCTAAATATGAGAGAGAGAGAGAGTACACCTACATAATTATAGACTAGAAAAATGAAAAGAAGGCAAAAGAGCAGAGATTGAATGACAAATATTATTTGAAATTTTGAATGTTGAACTTGGGTTAATTTGGTATTTTGTTTCAAATGATGTTACG</canonical_amplicon>
		<polymorphic_amplicon>TTATGTAATGAGGAAGCAAAAACACATTTTTACAAGTAAAAGTAGAATAATAACTACACCTGATGAAAAAGAATTTCMTTTTCATTTTTGAAATTCTAAATATGAGAGAGAGAGAGAGTACACCTACATAATTATAGACTAGAAAAATGAAAAGAAGGCAAAAGAGCAGAGATTGAATGACAAATATTATTTGAAATTTTGAATGTTGAACTTGGGTTAATTTGGTATTTTGTTTCAAATGATGTTACG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39324</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>769270</contig_pos>
        <strand></strand>
        <context>ttccgtatat[A/T]tttctgttat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCAGTATTTTTCTTTTTTTCTTTTCTCGTGATCACTGCTTTCCGTATAT</left_flank>
        <right_flank>TTTCTGTTATTTTTCCAAAGAGAAGTCGGAGGATAAAAATTAAAATTGGC</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGAGACCACTTGACGATTGGAAATTGGAACTTTGTGTTCTCAATTTTCTTGTCCTCTTCCTTCTTATTAACATCCATCATAATTATGTTCTCCATTTAAACGTACTGTTTCTACTTTCATTATATTTTCACATTTGTTTCCATTTCTTATGTTTCTTGACCATCAAGCTCAATGGAATCGAACATGATGTAAAAAATTTAGATTTGATTTGAAACAGAAAAAATATATGTAAAATACGATTTTGATTGTTTTGTACTTTTTTTGAATTTTTGAAACATGGAAAGCCTGAAACAAAACACATATTTTTCACATTTATCAATTTCATCTTAAGAATTTTTGAAGCTAGTTTTGACAAAAATATATTACCCTGGTACAAAAAATGTAGCTATGGAAGAGAAATGCTGGTGGCCGTGGCGGAGGATCTTAAAATGAATACCTACAGTAACCTTCCAGTATTTTTCTTTTTTTCTTTTCTCGTGATCACTGCTTTCCGTATATATTTCTGTTATTTTTCCAAAGAGAAGTCGGAGGATAAAAATTAAAATTGGCGAAAATCGAGCTAACCAATCCGGAAAGTTGAAAAAAAAATGGTTTTGGTTACGGTAGTTGTGTTTGTGGGAGCTTCGGCCACGGCCACCAGCGTTTCTCTTCCTTTTTTGCGCAATCTATTTTAATAATTTCAACTATAAGGTGTGCTTTTTATTTTTCTTGATTTTCGCCTTATTCGTAAACCGCAACTAGAATAATTTCTTTGACTAAAAACTATGTTGCGATATTTAGTGTGCCATTTTTCTATAGGGTGCAAAGTCATAGAAATCTTAAAATAGCACTTTAAAATGTGCTTGTTGCAAAGATCTAAATGTCATCAAGTTCTGTAATTGTACAACTGATAATTTTTTTTTTGAAATATAGTGAAAAGTTGAATACTTCCAAGGTGAAGAAATGGAAAAAAATTAATCTGAGAATTTGAATCTTGTTTGGAAAATTGAAAACAATAAC</canonical>
            <polymorphic>AGGAGACCACTTGACGATTGGAAATTGGAACTTTGTGTTCTCAATTTTCTTGTCCTCTTCCTTCTTATTAACATCCATCATAATTATGTTCTCCATTTAAACGTACTGTTTCTACTTTCATTATATTTTCACATTTGTTTCCATTTCTTATGTTTCTTGACCATCAAGCTCAATGGAATCGAACATGATGTAAAAAATTTAGATTTGATTTGAAACAGAAAAAATATATGTAAAATACGATTTTGATTGTTTTGTACTTTTTTTGAATTTTTGAAACATGGAAAGCCTGAAACAAAACACATATTTTTCACATTTATCAATTTCATCTTAAGAATTTTTGAAGCTAGTTTTGACAAAAATATATTACCCTGGTACAAAAAATGTAGCTATGGAAGAGAAATGCTGGTGGCCGTGGCGGAGGATCTTAAAATGAATACCTACAGTAACCTTCCAGTATTTTTCTTTTTTTCTTTTCTCGTGATCACTGCTTTCCGTATATWTTTCTGTTATTTTTCCAAAGAGAAGTCGGAGGATAAAAATTAAAATTGGCGAAAATCGAGCTAACCAATCCGGAAAGTTGAAAAAAAAATGGTTTTGGTTACGGTAGTTGTGTTTGTGGGAGCTTCGGCCACGGCCACCAGCGTTTCTCTTCCTTTTTTGCGCAATCTATTTTAATAATTTCAACTATAAGGTGTGCTTTTTATTTTTCTTGATTTTCGCCTTATTCGTAAACCGCAACTAGAATAATTTCTTTGACTAAAAACTATGTTGCGATATTTAGTGTGCCATTTTTCTATAGGGTGCAAAGTCATAGAAATCTTAAAATAGCACTTTAAAATGTGCTTGTTGCAAAGATCTAAATGTCATCAAGTTCTGTAATTGTACAACTGATAATTTTTTTTTTGAAATATAGTGAAAAGTTGAATACTTCCAAGGTGAAGAAATGGAAAAAAATTAATCTGAGAATTTGAATCTTGTTTGGAAAATTGAAAACAATAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTTTTGAAGCTAGTTTTGAC</pcr_primer_p1>
		<pcr_primer_p2>AAAAGCACACCTTATAGTTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>370</pcr_amplicon_size>
		<canonical_amplicon>GAATTTTTGAAGCTAGTTTTGACAAAAATATATTACCCTGGTACAAAAAATGTAGCTATGGAAGAGAAATGCTGGTGGCCGTGGCGGAGGATCTTAAAATGAATACCTACAGTAACCTTCCAGTATTTTTCTTTTTTTCTTTTCTCGTGATCACTGCTTTCCGTATATATTTCTGTTATTTTTCCAAAGAGAAGTCGGAGGATAAAAATTAAAATTGGCGAAAATCGAGCTAACCAATCCGGAAAGTTGAAAAAAAAATGGTTTTGGTTACGGTAGTTGTGTTTGTGGGAGCTTCGGCCACGGCCACCAGCGTTTCTCTTCCTTTTTTGCGCAATCTATTTTAATAATTTCAACTATAAGGTGTGCTTTT</canonical_amplicon>
		<polymorphic_amplicon>GAATTTTTGAAGCTAGTTTTGACAAAAATATATTACCCTGGTACAAAAAATGTAGCTATGGAAGAGAAATGCTGGTGGCCGTGGCGGAGGATCTTAAAATGAATACCTACAGTAACCTTCCAGTATTTTTCTTTTTTTCTTTTCTCGTGATCACTGCTTTCCGTATATWTTTCTGTTATTTTTCCAAAGAGAAGTCGGAGGATAAAAATTAAAATTGGCGAAAATCGAGCTAACCAATCCGGAAAGTTGAAAAAAAAATGGTTTTGGTTACGGTAGTTGTGTTTGTGGGAGCTTCGGCCACGGCCACCAGCGTTTCTCTTCCTTTTTTGCGCAATCTATTTTAATAATTTCAACTATAAGGTGTGCTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39325</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>770646</contig_pos>
        <strand></strand>
        <context>attgtattga[A/G]agctcaaaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGACAAACAATCCAAAAAGCACAAAAAAAAATATAGAAAATTGTATTGA</left_flank>
        <right_flank>AGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCTACCG</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTTTAGAAATGACTGTACAAAAAGAGCTAAATATAGGAGTAAAATGCACCCGAAATAGACTCAAAACTTCGTAACTCACCACCACCTTTCATGTTTGAATTTTAATTTCCGGGAAGAAGAAGAAGACACTTATATGGAAAAAAGATAACGTCGCCTCATTTCTGATATTTCCAGATAGTTGTATGCTCTCGGTCAGTCAGTTGACTGTTTGTATACAATTATTCAATACTTTTCAGATTTAATTCCGAAATTTCACATTATTATTTTTCATACTTGTAACGGGCCGGGCCGGGCCGGGTTTTTTTCCCGAATTTTGGAGGCCCGGCCCGGCGGGCCTGTCATTCCACAAGCTTGAAAATTTCAAAAAACACATAAGGGGACCTTTATGTGATTTTTTTCGATCAAAACATTTTTTTCGAGTTTTTAAAAATATTTTTTAAATCAAACAGACAAACAATCCAAAAAGCACAAAAAAAAATATAGAAAATTGTATTGAAAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCTACCGGGCCGGGCCCGGACCTTGAAATTTTCCTCAGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGTTATTTTTCTTATTTAATGTTTTGAAGAACCACCAAAAATAATGAAAATTCAAGTGCACCGTACGGCGGTGACGTCAGAACTAACAGTGACCAGTTTTCAATTGGTTTAGTCACATAATTATAGTCGCATCGTCAAAAAAAAGACGAGAGTCATTTCGGAAATTGATCTTCCGTTTTTGACAACTAATGATTTATGTGTGTGTTCTATTTCGAAAACTTTCAAAAAACGAACAATAGTCTCTCGTGGGCGTATATTGTCAAAACAGACTGTCACATATTGGAACTTCCAGATTATAACGAACCAAACGTTTTTTGAACTCTAGGAATCAGTATACAGGAGTTTTTTGGAGTAGAGTATGCATTCTAACGTAACGGTGT</canonical>
            <polymorphic>TATTTTTAGAAATGACTGTACAAAAAGAGCTAAATATAGGAGTAAAATGCACCCGAAATAGACTCAAAACTTCGTAACTCACCACCACCTTTCATGTTTGAATTTTAATTTCCGGGAAGAAGAAGAAGACACTTATATGGAAAAAAGATAACGTCGCCTCATTTCTGATATTTCCAGATAGTTGTATGCTCTCGGTCAGTCAGTTGACTGTTTGTATACAATTATTCAATACTTTTCAGATTTAATTCCGAAATTTCACATTATTATTTTTCATACTTGTAACGGGCCGGGCCGGGCCGGGTTTTTTTCCCGAATTTTGGAGGCCCGGCCCGGCGGGCCTGTCATTCCACAAGCTTGAAAATTTCAAAAAACACATAAGGGGACCTTTATGTGATTTTTTTCGATCAAAACATTTTTTTCGAGTTTTTAAAAATATTTTTTAAATCAAACAGACAAACAATCCAAAAAGCACAAAAAAAAATATAGAAAATTGTATTGARAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCTACCGGGCCGGGCCCGGACCTTGAAATTTTCCTCAGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGTTATTTTTCTTATTTAATGTTTTGAAGAACCACCAAAAATAATGAAAATTCAAGTGCACCGTACGGCGGTGACGTCAGAACTAACAGTGACCAGTTTTCAATTGGTTTAGTCACATAATTATAGTCGCATCGTCAAAAAAAAGACGAGAGTCATTTCGGAAATTGATCTTCCGTTTTTGACAACTAATGATTTATGTGTGTGTTCTATTTCGAAAACTTTCAAAAAACGAACAATAGTCTCTCGTGGGCGTATATTGTCAAAACAGACTGTCACATATTGGAACTTCCAGATTATAACGAACCAAACGTTTTTTGAACTCTAGGAATCAGTATACAGGAGTTTTTTGGAGTAGAGTATGCATTCTAACGTAACGGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCCGAAATTTCACATTATTA</pcr_primer_p1>
		<pcr_primer_p2>TGGTTCTTCAAAACATTAAATAAG</pcr_primer_p2>
		<pcr_amplicon_size>411</pcr_amplicon_size>
		<canonical_amplicon>AATTCCGAAATTTCACATTATTATTTTTCATACTTGTAACGGGCCGGGCCGGGCCGGGTTTTTTTCCCGAATTTTGGAGGCCCGGCCCGGCGGGCCTGTCATTCCACAAGCTTGAAAATTTCAAAAAACACATAAGGGGACCTTTATGTGATTTTTTTCGATCAAAACATTTTTTTCGAGTTTTTAAAAATATTTTTTAAATCAAACAGACAAACAATCCAAAAAGCACAAAAAAAAATATAGAAAATTGTATTGAAAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCTACCGGGCCGGGCCCGGACCTTGAAATTTTCCTCAGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGTTATTTTTCTTATTTAATGTTTTGAAGAACCA</canonical_amplicon>
		<polymorphic_amplicon>AATTCCGAAATTTCACATTATTATTTTTCATACTTGTAACGGGCCGGGCCGGGCCGGGTTTTTTTCCCGAATTTTGGAGGCCCGGCCCGGCGGGCCTGTCATTCCACAAGCTTGAAAATTTCAAAAAACACATAAGGGGACCTTTATGTGATTTTTTTCGATCAAAACATTTTTTTCGAGTTTTTAAAAATATTTTTTAAATCAAACAGACAAACAATCCAAAAAGCACAAAAAAAAATATAGAAAATTGTATTGARAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCTACCGGGCCGGGCCCGGACCTTGAAATTTTCCTCAGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGTTATTTTTCTTATTTAATGTTTTGAAGAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39326</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>770669</contig_pos>
        <strand></strand>
        <context>ggttcaaaat[G/A]acaaaatttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAAAAAAATATAGAAAATTGTATTGAAAGCTCAAAATTCGGTTCAAAAT</left_flank>
        <right_flank>ACAAAATTTTTGCTACCGGGCCTACCGGGCCGGGCCCGGACCTTGAAATT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGAGCTAAATATAGGAGTAAAATGCACCCGAAATAGACTCAAAACTTCGTAACTCACCACCACCTTTCATGTTTGAATTTTAATTTCCGGGAAGAAGAAGAAGACACTTATATGGAAAAAAGATAACGTCGCCTCATTTCTGATATTTCCAGATAGTTGTATGCTCTCGGTCAGTCAGTTGACTGTTTGTATACAATTATTCAATACTTTTCAGATTTAATTCCGAAATTTCACATTATTATTTTTCATACTTGTAACGGGCCGGGCCGGGCCGGGTTTTTTTCCCGAATTTTGGAGGCCCGGCCCGGCGGGCCTGTCATTCCACAAGCTTGAAAATTTCAAAAAACACATAAGGGGACCTTTATGTGATTTTTTTCGATCAAAACATTTTTTTCGAGTTTTTAAAAATATTTTTTAAATCAAACAGACAAACAATCCAAAAAGCACAAAAAAAAATATAGAAAATTGTATTGAAAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCTACCGGGCCGGGCCCGGACCTTGAAATTTTCCTCAGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGTTATTTTTCTTATTTAATGTTTTGAAGAACCACCAAAAATAATGAAAATTCAAGTGCACCGTACGGCGGTGACGTCAGAACTAACAGTGACCAGTTTTCAATTGGTTTAGTCACATAATTATAGTCGCATCGTCAAAAAAAAGACGAGAGTCATTTCGGAAATTGATCTTCCGTTTTTGACAACTAATGATTTATGTGTGTGTTCTATTTCGAAAACTTTCAAAAAACGAACAATAGTCTCTCGTGGGCGTATATTGTCAAAACAGACTGTCACATATTGGAACTTCCAGATTATAACGAACCAAACGTTTTTTGAACTCTAGGAATCAGTATACAGGAGTTTTTTGGAGTAGAGTATGCATTCTAACGTAACGGTGTATAATGCTTTGTGTTCATTCTGC</canonical>
            <polymorphic>AAAGAGCTAAATATAGGAGTAAAATGCACCCGAAATAGACTCAAAACTTCGTAACTCACCACCACCTTTCATGTTTGAATTTTAATTTCCGGGAAGAAGAAGAAGACACTTATATGGAAAAAAGATAACGTCGCCTCATTTCTGATATTTCCAGATAGTTGTATGCTCTCGGTCAGTCAGTTGACTGTTTGTATACAATTATTCAATACTTTTCAGATTTAATTCCGAAATTTCACATTATTATTTTTCATACTTGTAACGGGCCGGGCCGGGCCGGGTTTTTTTCCCGAATTTTGGAGGCCCGGCCCGGCGGGCCTGTCATTCCACAAGCTTGAAAATTTCAAAAAACACATAAGGGGACCTTTATGTGATTTTTTTCGATCAAAACATTTTTTTCGAGTTTTTAAAAATATTTTTTAAATCAAACAGACAAACAATCCAAAAAGCACAAAAAAAAATATAGAAAATTGTATTGAAAGCTCAAAATTCGGTTCAAAATRACAAAATTTTTGCTACCGGGCCTACCGGGCCGGGCCCGGACCTTGAAATTTTCCTCAGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGTTATTTTTCTTATTTAATGTTTTGAAGAACCACCAAAAATAATGAAAATTCAAGTGCACCGTACGGCGGTGACGTCAGAACTAACAGTGACCAGTTTTCAATTGGTTTAGTCACATAATTATAGTCGCATCGTCAAAAAAAAGACGAGAGTCATTTCGGAAATTGATCTTCCGTTTTTGACAACTAATGATTTATGTGTGTGTTCTATTTCGAAAACTTTCAAAAAACGAACAATAGTCTCTCGTGGGCGTATATTGTCAAAACAGACTGTCACATATTGGAACTTCCAGATTATAACGAACCAAACGTTTTTTGAACTCTAGGAATCAGTATACAGGAGTTTTTTGGAGTAGAGTATGCATTCTAACGTAACGGTGTATAATGCTTTGTGTTCATTCTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCCGAAATTTCACATTATTA</pcr_primer_p1>
		<pcr_primer_p2>TGGTTCTTCAAAACATTAAATAAG</pcr_primer_p2>
		<pcr_amplicon_size>411</pcr_amplicon_size>
		<canonical_amplicon>AATTCCGAAATTTCACATTATTATTTTTCATACTTGTAACGGGCCGGGCCGGGCCGGGTTTTTTTCCCGAATTTTGGAGGCCCGGCCCGGCGGGCCTGTCATTCCACAAGCTTGAAAATTTCAAAAAACACATAAGGGGACCTTTATGTGATTTTTTTCGATCAAAACATTTTTTTCGAGTTTTTAAAAATATTTTTTAAATCAAACAGACAAACAATCCAAAAAGCACAAAAAAAAATATAGAAAATTGTATTGAAAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCTACCGGGCCGGGCCCGGACCTTGAAATTTTCCTCAGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGTTATTTTTCTTATTTAATGTTTTGAAGAACCA</canonical_amplicon>
		<polymorphic_amplicon>AATTCCGAAATTTCACATTATTATTTTTCATACTTGTAACGGGCCGGGCCGGGCCGGGTTTTTTTCCCGAATTTTGGAGGCCCGGCCCGGCGGGCCTGTCATTCCACAAGCTTGAAAATTTCAAAAAACACATAAGGGGACCTTTATGTGATTTTTTTCGATCAAAACATTTTTTTCGAGTTTTTAAAAATATTTTTTAAATCAAACAGACAAACAATCCAAAAAGCACAAAAAAAAATATAGAAAATTGTATTGAAAGCTCAAAATTCGGTTCAAAATRACAAAATTTTTGCTACCGGGCCTACCGGGCCGGGCCCGGACCTTGAAATTTTCCTCAGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGTTATTTTTCTTATTTAATGTTTTGAAGAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39327</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>770693</contig_pos>
        <strand></strand>
        <context>taccgggcct[A/T]ccgggccggg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAAAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCT</left_flank>
        <right_flank>CCGGGCCGGGCCCGGACCTTGAAATTTTCCTCAGGCCCGGGCTTTGGCGG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGCACCCGAAATAGACTCAAAACTTCGTAACTCACCACCACCTTTCATGTTTGAATTTTAATTTCCGGGAAGAAGAAGAAGACACTTATATGGAAAAAAGATAACGTCGCCTCATTTCTGATATTTCCAGATAGTTGTATGCTCTCGGTCAGTCAGTTGACTGTTTGTATACAATTATTCAATACTTTTCAGATTTAATTCCGAAATTTCACATTATTATTTTTCATACTTGTAACGGGCCGGGCCGGGCCGGGTTTTTTTCCCGAATTTTGGAGGCCCGGCCCGGCGGGCCTGTCATTCCACAAGCTTGAAAATTTCAAAAAACACATAAGGGGACCTTTATGTGATTTTTTTCGATCAAAACATTTTTTTCGAGTTTTTAAAAATATTTTTTAAATCAAACAGACAAACAATCCAAAAAGCACAAAAAAAAATATAGAAAATTGTATTGAAAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCTACCGGGCCGGGCCCGGACCTTGAAATTTTCCTCAGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGTTATTTTTCTTATTTAATGTTTTGAAGAACCACCAAAAATAATGAAAATTCAAGTGCACCGTACGGCGGTGACGTCAGAACTAACAGTGACCAGTTTTCAATTGGTTTAGTCACATAATTATAGTCGCATCGTCAAAAAAAAGACGAGAGTCATTTCGGAAATTGATCTTCCGTTTTTGACAACTAATGATTTATGTGTGTGTTCTATTTCGAAAACTTTCAAAAAACGAACAATAGTCTCTCGTGGGCGTATATTGTCAAAACAGACTGTCACATATTGGAACTTCCAGATTATAACGAACCAAACGTTTTTTGAACTCTAGGAATCAGTATACAGGAGTTTTTTGGAGTAGAGTATGCATTCTAACGTAACGGTGTATAATGCTTTGTGTTCATTCTGCGTACAGCTATCCTGCTTTCATGTA</canonical>
            <polymorphic>TGCACCCGAAATAGACTCAAAACTTCGTAACTCACCACCACCTTTCATGTTTGAATTTTAATTTCCGGGAAGAAGAAGAAGACACTTATATGGAAAAAAGATAACGTCGCCTCATTTCTGATATTTCCAGATAGTTGTATGCTCTCGGTCAGTCAGTTGACTGTTTGTATACAATTATTCAATACTTTTCAGATTTAATTCCGAAATTTCACATTATTATTTTTCATACTTGTAACGGGCCGGGCCGGGCCGGGTTTTTTTCCCGAATTTTGGAGGCCCGGCCCGGCGGGCCTGTCATTCCACAAGCTTGAAAATTTCAAAAAACACATAAGGGGACCTTTATGTGATTTTTTTCGATCAAAACATTTTTTTCGAGTTTTTAAAAATATTTTTTAAATCAAACAGACAAACAATCCAAAAAGCACAAAAAAAAATATAGAAAATTGTATTGAAAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCTWCCGGGCCGGGCCCGGACCTTGAAATTTTCCTCAGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGTTATTTTTCTTATTTAATGTTTTGAAGAACCACCAAAAATAATGAAAATTCAAGTGCACCGTACGGCGGTGACGTCAGAACTAACAGTGACCAGTTTTCAATTGGTTTAGTCACATAATTATAGTCGCATCGTCAAAAAAAAGACGAGAGTCATTTCGGAAATTGATCTTCCGTTTTTGACAACTAATGATTTATGTGTGTGTTCTATTTCGAAAACTTTCAAAAAACGAACAATAGTCTCTCGTGGGCGTATATTGTCAAAACAGACTGTCACATATTGGAACTTCCAGATTATAACGAACCAAACGTTTTTTGAACTCTAGGAATCAGTATACAGGAGTTTTTTGGAGTAGAGTATGCATTCTAACGTAACGGTGTATAATGCTTTGTGTTCATTCTGCGTACAGCTATCCTGCTTTCATGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTCCGAAATTTCACATTATTA</pcr_primer_p1>
		<pcr_primer_p2>TGGTTCTTCAAAACATTAAATAAG</pcr_primer_p2>
		<pcr_amplicon_size>411</pcr_amplicon_size>
		<canonical_amplicon>AATTCCGAAATTTCACATTATTATTTTTCATACTTGTAACGGGCCGGGCCGGGCCGGGTTTTTTTCCCGAATTTTGGAGGCCCGGCCCGGCGGGCCTGTCATTCCACAAGCTTGAAAATTTCAAAAAACACATAAGGGGACCTTTATGTGATTTTTTTCGATCAAAACATTTTTTTCGAGTTTTTAAAAATATTTTTTAAATCAAACAGACAAACAATCCAAAAAGCACAAAAAAAAATATAGAAAATTGTATTGAAAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCTACCGGGCCGGGCCCGGACCTTGAAATTTTCCTCAGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGTTATTTTTCTTATTTAATGTTTTGAAGAACCA</canonical_amplicon>
		<polymorphic_amplicon>AATTCCGAAATTTCACATTATTATTTTTCATACTTGTAACGGGCCGGGCCGGGCCGGGTTTTTTTCCCGAATTTTGGAGGCCCGGCCCGGCGGGCCTGTCATTCCACAAGCTTGAAAATTTCAAAAAACACATAAGGGGACCTTTATGTGATTTTTTTCGATCAAAACATTTTTTTCGAGTTTTTAAAAATATTTTTTAAATCAAACAGACAAACAATCCAAAAAGCACAAAAAAAAATATAGAAAATTGTATTGAAAGCTCAAAATTCGGTTCAAAATGACAAAATTTTTGCTACCGGGCCTWCCGGGCCGGGCCCGGACCTTGAAATTTTCCTCAGGCCCGGGCTTTGGCGGGCCGGCCCGGAATTTTACAAGTATGTTATTTTTCTTATTTAATGTTTTGAAGAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39328</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>787407</contig_pos>
        <strand>+</strand>
        <context>CCGGCCTTGT[C/T]GTCCATTTYC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGT</left_flank>
        <right_flank>GTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGGTTCATTTTCACTAAAAAGCTAACAAGCTCCTCCAAGATATTATAGTTATTCTGAGAATGCCAAATAAGAAAGAATCAAAACCAAAAGACACGAGAGAGATCTTTATTTCCAAATTCAACGGTCCTCTGGTTTTCTCTCAAACAGAAACTTCATGAATTTGCAATCAAACCAAAACAAAACGTTTTTTGCAACTCCACATACATTTTCTGGAACCATGTTCTTAATTTTCCTTCTTCCTCCTCTCCTTCTCCCGCACTTCTTCCATGTGACACATTCTTCTTTATTTCATTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACAT</canonical>
            <polymorphic>ATGGTTCATTTTCACTAAAAAGCTAACAAGCTCCTCCAAGATATTATAGTTATTCTGAGAATGCCAAATAAGAAAGAATCAAAACCAAAAGACACGAGAGAGATCTTTATTTCCAAATTCAACGGTCCTCTGGTTTTCTCTCAAACAGAAACTTCATGAATTTGCAATCAAACCAAAACAAAACGTTTTTTGCAACTCCACATACATTTTCTGGAACCATGTTCTTAATTTTCCTTCTTCCTCCTCTCCTTCTCCCGCACTTCTTCCATGTGACACATTCTTCTTTATTTCATTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTYGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTCTTCTTCACTTTCCTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAAACATATCCGGTGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTYGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39329</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>787416</contig_pos>
        <strand>+</strand>
        <context>TYGTCCATTT[C/T]CTATCCCGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTT</left_flank>
        <right_flank>CTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCACTAAAAAGCTAACAAGCTCCTCCAAGATATTATAGTTATTCTGAGAATGCCAAATAAGAAAGAATCAAAACCAAAAGACACGAGAGAGATCTTTATTTCCAAATTCAACGGTCCTCTGGTTTTCTCTCAAACAGAAACTTCATGAATTTGCAATCAAACCAAAACAAAACGTTTTTTGCAACTCCACATACATTTTCTGGAACCATGTTCTTAATTTTCCTTCTTCCTCCTCTCCTTCTCCCGCACTTCTTCCATGTGACACATTCTTCTTTATTTCATTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTT</canonical>
            <polymorphic>TTTCACTAAAAAGCTAACAAGCTCCTCCAAGATATTATAGTTATTCTGAGAATGCCAAATAAGAAAGAATCAAAACCAAAAGACACGAGAGAGATCTTTATTTCCAAATTCAACGGTCCTCTGGTTTTCTCTCAAACAGAAACTTCATGAATTTGCAATCAAACCAAAACAAAACGTTTTTTGCAACTCCACATACATTTTCTGGAACCATGTTCTTAATTTTCCTTCTTCCTCCTCTCCTTCTCCCGCACTTCTTCCATGTGACACATTCTTCTTTATTTCATTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTYCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTCTTCTTCACTTTCCTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAAACATATCCGGTGCTTTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTYCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39330</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>787477</contig_pos>
        <strand>+</strand>
        <context>TTTTTTGCCC[G/T]TTTGGAGGTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCC</left_flank>
        <right_flank>TTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAAGAATCAAAACCAAAAGACACGAGAGAGATCTTTATTTCCAAATTCAACGGTCCTCTGGTTTTCTCTCAAACAGAAACTTCATGAATTTGCAATCAAACCAAAACAAAACGTTTTTTGCAACTCCACATACATTTTCTGGAACCATGTTCTTAATTTTCCTTCTTCCTCCTCTCCTTCTCCCGCACTTCTTCCATGTGACACATTCTTCTTTATTTCATTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAA</canonical>
            <polymorphic>AGAAAGAATCAAAACCAAAAGACACGAGAGAGATCTTTATTTCCAAATTCAACGGTCCTCTGGTTTTCTCTCAAACAGAAACTTCATGAATTTGCAATCAAACCAAAACAAAACGTTTTTTGCAACTCCACATACATTTTCTGGAACCATGTTCTTAATTTTCCTTCTTCCTCCTCTCCTTCTCCCGCACTTCTTCCATGTGACACATTCTTCTTTATTTCATTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCKTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCATTTTTCCTTCCTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>CTGTCTCATGACCAATTTTACA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAG</canonical_amplicon>
		<polymorphic_amplicon>ACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCKTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39331</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>787490</contig_pos>
        <strand>+</strand>
        <context>TGGAGGTGCA[A/T]TTCTCTGAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCA</left_flank>
        <right_flank>TTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAAAAGACACGAGAGAGATCTTTATTTCCAAATTCAACGGTCCTCTGGTTTTCTCTCAAACAGAAACTTCATGAATTTGCAATCAAACCAAAACAAAACGTTTTTTGCAACTCCACATACATTTTCTGGAACCATGTTCTTAATTTTCCTTCTTCCTCCTCTCCTTCTCCCGCACTTCTTCCATGTGACACATTCTTCTTTATTTCATTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCT</canonical>
            <polymorphic>ACCAAAAGACACGAGAGAGATCTTTATTTCCAAATTCAACGGTCCTCTGGTTTTCTCTCAAACAGAAACTTCATGAATTTGCAATCAAACCAAAACAAAACGTTTTTTGCAACTCCACATACATTTTCTGGAACCATGTTCTTAATTTTCCTTCTTCCTCCTCTCCTTCTCCCGCACTTCTTCCATGTGACACATTCTTCTTTATTTCATTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCAWTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTCATTTTTCCTTCCTTCTTC</pcr_primer_p1>
		<pcr_primer_p2>CTGTCTCATGACCAATTTTACA</pcr_primer_p2>
		<pcr_amplicon_size>254</pcr_amplicon_size>
		<canonical_amplicon>ACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAG</canonical_amplicon>
		<polymorphic_amplicon>ACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCAWTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39332</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>787510</contig_pos>
        <strand>+</strand>
        <context>CAGATCGGGC[A/G]TTTCTCTGAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGC</left_flank>
        <right_flank>TTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTTATTTCCAAATTCAACGGTCCTCTGGTTTTCTCTCAAACAGAAACTTCATGAATTTGCAATCAAACCAAAACAAAACGTTTTTTGCAACTCCACATACATTTTCTGGAACCATGTTCTTAATTTTCCTTCTTCCTCCTCTCCTTCTCCCGCACTTCTTCCATGTGACACATTCTTCTTTATTTCATTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTC</canonical>
            <polymorphic>TCTTTATTTCCAAATTCAACGGTCCTCTGGTTTTCTCTCAAACAGAAACTTCATGAATTTGCAATCAAACCAAAACAAAACGTTTTTTGCAACTCCACATACATTTTCTGGAACCATGTTCTTAATTTTCCTTCTTCCTCCTCTCCTTCTCCCGCACTTCTTCCATGTGACACATTCTTCTTTATTTCATTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCRTTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCCTTTTTAATTTGTGCT</pcr_primer_p1>
		<pcr_primer_p2>TGATTTCTAACTACCTAGCTCTGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCRTTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39333</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>787530</contig_pos>
        <strand>+</strand>
        <context>ACAGATTTTT[C/T]TCAGAATTGT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTT</left_flank>
        <right_flank>TCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTCCTCTGGTTTTCTCTCAAACAGAAACTTCATGAATTTGCAATCAAACCAAAACAAAACGTTTTTTGCAACTCCACATACATTTTCTGGAACCATGTTCTTAATTTTCCTTCTTCCTCCTCTCCTTCTCCCGCACTTCTTCCATGTGACACATTCTTCTTTATTTCATTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCT</canonical>
            <polymorphic>GGTCCTCTGGTTTTCTCTCAAACAGAAACTTCATGAATTTGCAATCAAACCAAAACAAAACGTTTTTTGCAACTCCACATACATTTTCTGGAACCATGTTCTTAATTTTCCTTCTTCCTCCTCTCCTTCTCCCGCACTTCTTCCATGTGACACATTCTTCTTTATTTCATTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTYTCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATNNNNATC</site>
                <isoschizomers>
                    <enzyme>BsaBI</enzyme>
                    <enzyme>Bse8I</enzyme>
                    <enzyme>BseJI</enzyme>
                    <enzyme>BsiBI</enzyme>
                    <enzyme>BsrBRI</enzyme>
                    <enzyme>MamI</enzyme>
                </isoschizomers>
                <canonical_bands>503 256 241</canonical_bands>
                <polymorphic_bands>759 241</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCCCTTTTTAATTTGTGCT</pcr_primer_p1>
		<pcr_primer_p2>TGATTTCTAACTACCTAGCTCTGTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCA</canonical_amplicon>
		<polymorphic_amplicon>TTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTYTCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39334</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>787606</contig_pos>
        <strand>+</strand>
        <context>AAATCATTCC[C/T]AAAATTAAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCC</left_flank>
        <right_flank>AAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATACATTTTCTGGAACCATGTTCTTAATTTTCCTTCTTCCTCCTCTCCTTCTCCCGCACTTCTTCCATGTGACACATTCTTCTTTATTTCATTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCTGGTTCCTGTAAAAGATAACAAAAATTGTCAACTGATAAATTGTTCATAATAAAATCAAAAGTGTTTCGTTCTTTGA</canonical>
            <polymorphic>ACATACATTTTCTGGAACCATGTTCTTAATTTTCCTTCTTCCTCCTCTCCTTCTCCCGCACTTCTTCCATGTGACACATTCTTCTTTATTTCATTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCYAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCTGGTTCCTGTAAAAGATAACAAAAATTGTCAACTGATAAATTGTTCATAATAAAATCAAAAGTGTTTCGTTCTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCCCGAAATGAAGAGTCA</pcr_primer_p1>
		<pcr_primer_p2>AAATTAATACATTTTGGTTTTCTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTT</canonical_amplicon>
		<polymorphic_amplicon>TATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCYAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39335</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>787679</contig_pos>
        <strand>+</strand>
        <context>TCTGGAACGG[A/G]AGSGTGCMCM</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGG</left_flank>
        <right_flank>AGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACATTCTTCTTTATTTCATTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCTGGTTCCTGTAAAAGATAACAAAAATTGTCAACTGATAAATTGTTCATAATAAAATCAAAAGTGTTTCGTTCTTTGACACATTTTTAATATTTTGCTCAGGAATTAAGATAATTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTA</canonical>
            <polymorphic>ACACATTCTTCTTTATTTCATTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGRAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCTGGTTCCTGTAAAAGATAACAAAAATTGTCAACTGATAAATTGTTCATAATAAAATCAAAAGTGTTTCGTTCTTTGACACATTTTTAATATTTTGCTCAGGAATTAAGATAATTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATTGTAAAATTGGTCATGAGA</pcr_primer_p1>
		<pcr_primer_p2>CCCCCACCTTTAAGAAAATA</pcr_primer_p2>
		<pcr_amplicon_size>198</pcr_amplicon_size>
		<canonical_amplicon>GAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGG</canonical_amplicon>
		<polymorphic_amplicon>GAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGRAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39336</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>787682</contig_pos>
        <strand>+</strand>
        <context>GGAACGGRAG[C/G]GTGCMCMYWY</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAG</left_flank>
        <right_flank>GTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTCTTCTTTATTTCATTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCTGGTTCCTGTAAAAGATAACAAAAATTGTCAACTGATAAATTGTTCATAATAAAATCAAAAGTGTTTCGTTCTTTGACACATTTTTAATATTTTGCTCAGGAATTAAGATAATTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTAAAA</canonical>
            <polymorphic>CATTCTTCTTTATTTCATTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGSGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCTGGTTCCTGTAAAAGATAACAAAAATTGTCAACTGATAAATTGTTCATAATAAAATCAAAAGTGTTTCGTTCTTTGACACATTTTTAATATTTTGCTCAGGAATTAAGATAATTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGACTGAAGAAAACCAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTTCTTAAAGGTGGGGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>311</pcr_amplicon_size>
		<canonical_amplicon>TCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAAC</canonical_amplicon>
		<polymorphic_amplicon>TCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGSGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39337</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>787687</contig_pos>
        <strand>+</strand>
        <context>GGRAGSGTGC[A/C]CMYWYYCCSC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGC</left_flank>
        <right_flank>CCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCTTTATTTCATTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCTGGTTCCTGTAAAAGATAACAAAAATTGTCAACTGATAAATTGTTCATAATAAAATCAAAAGTGTTTCGTTCTTTGACACATTTTTAATATTTTGCTCAGGAATTAAGATAATTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTAAAAGTTTT</canonical>
            <polymorphic>TTCTTTATTTCATTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCMCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCTGGTTCCTGTAAAAGATAACAAAAATTGTCAACTGATAAATTGTTCATAATAAAATCAAAAGTGTTTCGTTCTTTGACACATTTTTAATATTTTGCTCAGGAATTAAGATAATTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTAAAAGTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>500 352 107 41</canonical_bands>
                <polymorphic_bands>607 352 41</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACTGAAGAAAACCAAAATGTA</pcr_primer_p1>
		<pcr_primer_p2>GTTCTTAAAGGTGGGGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>AGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAAC</canonical_amplicon>
		<polymorphic_amplicon>AGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCMCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39338</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>787689</contig_pos>
        <strand>+</strand>
        <context>RAGSGTGCMC[A/C]YWYYCCSCTS</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGC</left_flank>
        <right_flank>ACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTATTTCATTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCTGGTTCCTGTAAAAGATAACAAAAATTGTCAACTGATAAATTGTTCATAATAAAATCAAAAGTGTTTCGTTCTTTGACACATTTTTAATATTTTGCTCAGGAATTAAGATAATTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTAAAAGTTTTAA</canonical>
            <polymorphic>CTTTATTTCATTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCMACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCTGGTTCCTGTAAAAGATAACAAAAATTGTCAACTGATAAATTGTTCATAATAAAATCAAAAGTGTTTCGTTCTTTGACACATTTTTAATATTTTGCTCAGGAATTAAGATAATTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTAAAAGTTTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>130 122 119 90 87 68 54 53 45 41 31 30 25 23 21 16 15 15 6 5 2 2</canonical_bands>
                <polymorphic_bands>130 122 119 90 87 68 54 53 45 41 31 30 25 23 21 16 15 15 11 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACTGAAGAAAACCAAAATGTA</pcr_primer_p1>
		<pcr_primer_p2>GTTCTTAAAGGTGGGGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>AGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAAC</canonical_amplicon>
		<polymorphic_amplicon>AGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCMACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39339</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>787690</contig_pos>
        <strand>+</strand>
        <context>AGSGTGCMCM[C/T]WYYCCSCTSA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCC</left_flank>
        <right_flank>CCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTATTTCATTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCTGGTTCCTGTAAAAGATAACAAAAATTGTCAACTGATAAATTGTTCATAATAAAATCAAAAGTGTTTCGTTCTTTGACACATTTTTAATATTTTGCTCAGGAATTAAGATAATTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTAAAAGTTTTAAA</canonical>
            <polymorphic>TTTATTTCATTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCYCCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCTGGTTCCTGTAAAAGATAACAAAAATTGTCAACTGATAAATTGTTCATAATAAAATCAAAAGTGTTTCGTTCTTTGACACATTTTTAATATTTTGCTCAGGAATTAAGATAATTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTAAAAGTTTTAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>130 122 119 90 87 68 54 53 44 41 31 30 26 23 21 16 15 15 6 5 2 2</canonical_bands>
                <polymorphic_bands>130 122 119 90 87 68 54 53 44 41 31 30 26 23 21 16 15 15 11 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACTGAAGAAAACCAAAATGTA</pcr_primer_p1>
		<pcr_primer_p2>GTTCTTAAAGGTGGGGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>AGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAAC</canonical_amplicon>
		<polymorphic_amplicon>AGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCYCCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39340</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>787691</contig_pos>
        <strand>+</strand>
        <context>GSGTGCMCMY[A/T]YYCCSCTSAM</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCA</left_flank>
        <right_flank>CTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATTTCATTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCTGGTTCCTGTAAAAGATAACAAAAATTGTCAACTGATAAATTGTTCATAATAAAATCAAAAGTGTTTCGTTCTTTGACACATTTTTAATATTTTGCTCAGGAATTAAGATAATTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTAAAAGTTTTAAAG</canonical>
            <polymorphic>TTATTTCATTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCAWCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCTGGTTCCTGTAAAAGATAACAAAAATTGTCAACTGATAAATTGTTCATAATAAAATCAAAAGTGTTTCGTTCTTTGACACATTTTTAATATTTTGCTCAGGAATTAAGATAATTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTAAAAGTTTTAAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>130 122 119 90 87 68 54 53 43 41 31 30 27 23 21 16 15 15 6 5 2 2</canonical_bands>
                <polymorphic_bands>130 122 119 90 87 68 54 53 43 41 31 30 27 23 21 16 15 15 11 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACTGAAGAAAACCAAAATGTA</pcr_primer_p1>
		<pcr_primer_p2>GTTCTTAAAGGTGGGGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>AGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAAC</canonical_amplicon>
		<polymorphic_amplicon>AGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCAWCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39341</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>787692</contig_pos>
        <strand>+</strand>
        <context>SGTGCMCMYW[C/T]YCCSCTSAMC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCAC</left_flank>
        <right_flank>TCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTCATTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCTGGTTCCTGTAAAAGATAACAAAAATTGTCAACTGATAAATTGTTCATAATAAAATCAAAAGTGTTTCGTTCTTTGACACATTTTTAATATTTTGCTCAGGAATTAAGATAATTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTAAAAGTTTTAAAGT</canonical>
            <polymorphic>TATTTCATTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACYTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCTGGTTCCTGTAAAAGATAACAAAAATTGTCAACTGATAAATTGTTCATAATAAAATCAAAAGTGTTTCGTTCTTTGACACATTTTTAATATTTTGCTCAGGAATTAAGATAATTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTAAAAGTTTTAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGACTGAAGAAAACCAAAATGTA</pcr_primer_p1>
		<pcr_primer_p2>GTTCTTAAAGGTGGGGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>AGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAAC</canonical_amplicon>
		<polymorphic_amplicon>AGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACYTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39342</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>787693</contig_pos>
        <strand>+</strand>
        <context>GTGCMCMYWY[C/T]CCSCTSAMCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACC</left_flank>
        <right_flank>CCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCATTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCTGGTTCCTGTAAAAGATAACAAAAATTGTCAACTGATAAATTGTTCATAATAAAATCAAAAGTGTTTCGTTCTTTGACACATTTTTAATATTTTGCTCAGGAATTAAGATAATTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTAAAAGTTTTAAAGTG</canonical>
            <polymorphic>ATTTCATTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCYCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCTGGTTCCTGTAAAAGATAACAAAAATTGTCAACTGATAAATTGTTCATAATAAAATCAAAAGTGTTTCGTTCTTTGACACATTTTTAATATTTTGCTCAGGAATTAAGATAATTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTAAAAGTTTTAAAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGACTGAAGAAAACCAAAATGTA</pcr_primer_p1>
		<pcr_primer_p2>GTTCTTAAAGGTGGGGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>AGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAAC</canonical_amplicon>
		<polymorphic_amplicon>AGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCYCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39343</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>787696</contig_pos>
        <strand>+</strand>
        <context>CMCMYWYYCC[C/G]CTSAMCAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCC</left_flank>
        <right_flank>CTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCTGGTTCCTGTAAAAGATAACAAAAATTGTCAACTGATAAATTGTTCATAATAAAATCAAAAGTGTTTCGTTCTTTGACACATTTTTAATATTTTGCTCAGGAATTAAGATAATTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTAAAAGTTTTAAAGTGGTA</canonical>
            <polymorphic>TCATTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCSCTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCTGGTTCCTGTAAAAGATAACAAAAATTGTCAACTGATAAATTGTTCATAATAAAATCAAAAGTGTTTCGTTCTTTGACACATTTTTAATATTTTGCTCAGGAATTAAGATAATTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTAAAAGTTTTAAAGTGGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>130 122 119 90 87 68 54 53 41 38 31 30 29 23 21 16 15 15 6 5 3 2 2</canonical_bands>
                <polymorphic_bands>130 122 119 90 87 68 54 53 41 38 37 30 29 23 21 16 15 15 5 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGACTGAAGAAAACCAAAATGTA</pcr_primer_p1>
		<pcr_primer_p2>GTTCTTAAAGGTGGGGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>AGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAAC</canonical_amplicon>
		<polymorphic_amplicon>AGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCSCTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39344</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>787699</contig_pos>
        <strand>+</strand>
        <context>MYWYYCCSCT[C/G]AMCAAATACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACT</left_flank>
        <right_flank>AACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCTGGTTCCTGTAAAAGATAACAAAAATTGTCAACTGATAAATTGTTCATAATAAAATCAAAAGTGTTTCGTTCTTTGACACATTTTTAATATTTTGCTCAGGAATTAAGATAATTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTAAAAGTTTTAAAGTGGTACAT</canonical>
            <polymorphic>TTAAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTSAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCTGGTTCCTGTAAAAGATAACAAAAATTGTCAACTGATAAATTGTTCATAATAAAATCAAAAGTGTTTCGTTCTTTGACACATTTTTAATATTTTGCTCAGGAATTAAGATAATTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTAAAAGTTTTAAAGTGGTACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGACTGAAGAAAACCAAAATGTA</pcr_primer_p1>
		<pcr_primer_p2>GTTCTTAAAGGTGGGGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>AGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAAC</canonical_amplicon>
		<polymorphic_amplicon>AGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTSAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39345</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>787701</contig_pos>
        <strand>+</strand>
        <context>WYYCCSCTSA[A/C]CAAATACAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCA</left_flank>
        <right_flank>CAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCTGGTTCCTGTAAAAGATAACAAAAATTGTCAACTGATAAATTGTTCATAATAAAATCAAAAGTGTTTCGTTCTTTGACACATTTTTAATATTTTGCTCAGGAATTAAGATAATTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTAAAAGTTTTAAAGTGGTACATTT</canonical>
            <polymorphic>AAACTTCTTTACGAGTATTTCTTTTCTTCTTCACTTTCCTTTTTTGTGCACCCGGATGAAAGCCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAMCAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCTGGTTCCTGTAAAAGATAACAAAAATTGTCAACTGATAAATTGTTCATAATAAAATCAAAAGTGTTTCGTTCTTTGACACATTTTTAATATTTTGCTCAGGAATTAAGATAATTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTAAAAGTTTTAAAGTGGTACATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGACTGAAGAAAACCAAAATGTA</pcr_primer_p1>
		<pcr_primer_p2>GTTCTTAAAGGTGGGGAGAC</pcr_primer_p2>
		<pcr_amplicon_size>309</pcr_amplicon_size>
		<canonical_amplicon>AGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAAC</canonical_amplicon>
		<polymorphic_amplicon>AGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAMCAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39346</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>787763</contig_pos>
        <strand></strand>
        <context>GCGTACAGCC[A/G]GCGTCCYCGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCC</left_flank>
        <right_flank>GCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCTGGTTCCTGTAAAAGATAACAAAAATTGTCAACTGATAAATTGTTCATAATAAAATCAAAAGTGTTTCGTTCTTTGACACATTTTTAATATTTTGCTCAGGAATTAAGATAATTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTAAAAGTTTTAAAGTGGTACATTTTGGTTCCGTTCAAAGTTGACTGTTACGAAAAATAACTCTTTACTGAAATTTTATAAACATAC</canonical>
            <polymorphic>CCAGATCCGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCRGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCTGGTTCCTGTAAAAGATAACAAAAATTGTCAACTGATAAATTGTTCATAATAAAATCAAAAGTGTTTCGTTCTTTGACACATTTTTAATATTTTGCTCAGGAATTAAGATAATTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTAAAAGTTTTAAAGTGGTACATTTTGGTTCCGTTCAAAGTTGACTGTTACGAAAAATAACTCTTTACTGAAATTTTATAAACATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAATACAAATATTTTCTTAAAGGTG</pcr_primer_p1>
		<pcr_primer_p2>TGGAATATCAGTTCTTAAAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCA</canonical_amplicon>
		<polymorphic_amplicon>CAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCRGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39347</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>787770</contig_pos>
        <strand></strand>
        <context>GCCRGCGTCC[C/T]CGCCTTTATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCC</left_flank>
        <right_flank>CGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCTGGTTCCTGTAAAAGATAACAAAAATTGTCAACTGATAAATTGTTCATAATAAAATCAAAAGTGTTTCGTTCTTTGACACATTTTTAATATTTTGCTCAGGAATTAAGATAATTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTAAAAGTTTTAAAGTGGTACATTTTGGTTCCGTTCAAAGTTGACTGTTACGAAAAATAACTCTTTACTGAAATTTTATAAACATACTTTCCAA</canonical>
            <polymorphic>CGTATCAAATACTTGAATATCTGCGAGAAACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCYCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCTGGTTCCTGTAAAAGATAACAAAAATTGTCAACTGATAAATTGTTCATAATAAAATCAAAAGTGTTTCGTTCTTTGACACATTTTTAATATTTTGCTCAGGAATTAAGATAATTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTAAAAGTTTTAAAGTGGTACATTTTGGTTCCGTTCAAAGTTGACTGTTACGAAAAATAACTCTTTACTGAAATTTTATAAACATACTTTCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>434 382 60 58 41 25</canonical_bands>
                <polymorphic_bands>434 423 60 58 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATACAAATATTTTCTTAAAGGTG</pcr_primer_p1>
		<pcr_primer_p2>TGGAATATCAGTTCTTAAAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCA</canonical_amplicon>
		<polymorphic_amplicon>CAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCYCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39348</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>787799</contig_pos>
        <strand>+</strand>
        <context>CGGGCGCCGG[C/G]TGCCTTTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGG</left_flank>
        <right_flank>TGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATC</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCTGGTTCCTGTAAAAGATAACAAAAATTGTCAACTGATAAATTGTTCATAATAAAATCAAAAGTGTTTCGTTCTTTGACACATTTTTAATATTTTGCTCAGGAATTAAGATAATTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTAAAAGTTTTAAAGTGGTACATTTTGGTTCCGTTCAAAGTTGACTGTTACGAAAAATAACTCTTTACTGAAATTTTATAAACATACTTTCCAAAGTTCACAAACTCGTTATGTCTCGCCTTT</canonical>
            <polymorphic>ACAAAAACTCATTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGSTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCTGGTTCCTGTAAAAGATAACAAAAATTGTCAACTGATAAATTGTTCATAATAAAATCAAAAGTGTTTCGTTCTTTGACACATTTTTAATATTTTGCTCAGGAATTAAGATAATTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTAAAAGTTTTAAAGTGGTACATTTTGGTTCCGTTCAAAGTTGACTGTTACGAAAAATAACTCTTTACTGAAATTTTATAAACATACTTTCCAAAGTTCACAAACTCGTTATGTCTCGCCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>492 467 34 7</canonical_bands>
                <polymorphic_bands>492 467 41</polymorphic_bands>
            </assay>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>497 270 233</canonical_bands>
                <polymorphic_bands>730 270</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>494 165 134 94 38 34 34 7</canonical_bands>
                <polymorphic_bands>494 165 134 94 41 38 34</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>130 122 90 87 83 71 68 54 53 41 31 30 29 23 23 21 16 15 6 5 2</canonical_bands>
                <polymorphic_bands>130 122 90 87 83 71 69 68 54 41 31 30 29 23 23 21 15 6 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATACAAATATTTTCTTAAAGGTG</pcr_primer_p1>
		<pcr_primer_p2>TGGAATATCAGTTCTTAAAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCA</canonical_amplicon>
		<polymorphic_amplicon>CAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGSTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39349</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>787810</contig_pos>
        <strand>+</strand>
        <context>TGCCTTTTTG[C/T]CCGCGTGGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTG</left_flank>
        <right_flank>CCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGC</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCTGGTTCCTGTAAAAGATAACAAAAATTGTCAACTGATAAATTGTTCATAATAAAATCAAAAGTGTTTCGTTCTTTGACACATTTTTAATATTTTGCTCAGGAATTAAGATAATTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTAAAAGTTTTAAAGTGGTACATTTTGGTTCCGTTCAAAGTTGACTGTTACGAAAAATAACTCTTTACTGAAATTTTATAAACATACTTTCCAAAGTTCACAAACTCGTTATGTCTCGCCTTTTAACTTTTATG</canonical>
            <polymorphic>TTTTTCCTTCCTTCTTCCCGCCTCTTGTCTTTTTTGCCTTTTTTCCCTTTTTAATTTGTGCTCTTCCTGTTTTTTTCCCGCCTTCTCCGGCCTTGTCGTCCATTTTCTATCCCGAAATGAAGAGTCAGAATTTTTTCCCGAAAAGCACCGGATATGTTTTTTGCCCGTTTGGAGGTGCATTTCTCTGAACAGATCGGGCATTTCTCTGAACAGATTTTTATCAGAATTGTAAAATTGGTCATGAGACAGTATTATTTCGGATCTTTGACAGAGCTAGGTAGTTAGAAATCATTCCCAAAATTAAGTGATTTGTATTTCAGTCAGACTGAAGAAAACCAAAATGTATTAATTTTCAATATCTGGAACGGAAGAGTGCGCCACCTCCACTCAACAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGYCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCAGACATTTTTTTATTCTTGTGGCTAAATATCGTAAAGCCTGTAGAAGGGCCCTAGATTTCAACTTTGATTCAATTTTCCTGGTTCCTGTAAAAGATAACAAAAATTGTCAACTGATAAATTGTTCATAATAAAATCAAAAGTGTTTCGTTCTTTGACACATTTTTAATATTTTGCTCAGGAATTAAGATAATTGAGCTCAAACTTGACAGTGTGGGGGCCCTTCTATTAAAAGTTTTAAAGTGGTACATTTTGGTTCCGTTCAAAGTTGACTGTTACGAAAAATAACTCTTTACTGAAATTTTATAAACATACTTTCCAAAGTTCACAAACTCGTTATGTCTCGCCTTTTAACTTTTATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCCNNNNNGGC</site>
                <isoschizomers>
                    <enzyme>BglI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>452 449 50 49</canonical_bands>
                <polymorphic_bands>452 449 99</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>495 488 17</canonical_bands>
                <polymorphic_bands>512 488</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATACAAATATTTTCTTAAAGGTG</pcr_primer_p1>
		<pcr_primer_p2>TGGAATATCAGTTCTTAAAGGTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGCCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCA</canonical_amplicon>
		<polymorphic_amplicon>CAAATACAAATATTTTCTTAAAGGTGGGGGACAGGAGATTAATGCCACTCTGCGTACAGCCAGCGTCCCCGCCTTTATGTATGCAATCGGGCGCCGGGTGCCTTTTTGYCCGCGTGGCTCAGTCGGTAGCGGCGCCGCACTCTCAATCCTCGCCCATGCTAGCTCAACTCCTCGAGGGGCATATTCAGACGGAATTTCGAGAACATTATTTTTTTTTCTTGTCTCCCCACCTTTAAGAACTGATATTCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39350</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>789815</contig_pos>
        <strand>+</strand>
        <context>ATTGTTAGAA[A/G]AATGAGTAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAGGGAAACTCACAATTTGGCGTTCATTTTCAAAGTGGAAATTGTTAGAA</left_flank>
        <right_flank>AATGAGTAGATTCTTGTTTGAACCTACCGAAAAGTTCCATTTTATACTGC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTCTTATGCATACTGGAACTGTTTCATCAATGATCACAGCTACCAAACCAGTCATCAACGTGGTCGTGATTGTCTTGTCAGCGATGAAGTTCAGATCTCATCAGAGACTTTTGAAGGTTTGTTGTTGTCAGAATTATTAGAACAAAAGATGACATGAATACGTATTCATTGAAATAGGTAAAATTCGATGTACAAAAAATCAGTTCGTTTGTTGAGATGGTCCAAATCCAGCTTCTCTCTTTCCGTAGTATCCAGCATAAGCAGATCCATATCCATATCCACCGTAGTATCCATTGTATGCTCCATATCCTCCGTAATAAGATGGATAATAAGAAGAGGTATATCCGTATCCGTAGTATTGAGCACTAGCCTCTTGAACCATGGAGCACATGACGAGGGCCAAGACACAGAGAAGGCTGGAAATGAATTTATATGATAAGGTTTAGAAAAGGGAAACTCACAATTTGGCGTTCATTTTCAAAGTGGAAATTGTTAGAAAAATGAGTAGATTCTTGTTTGAACCTACCGAAAAGTTCCATTTTATACTGCCGCTGTTCTATTTGCTCTGAGTTTTTTTTTGGATTCTCAAACAGTTTCGCCGCAAAATGTGTCAAAAATATAACTGGTAGGATTGCACTAAAATGATCAGATCATTGAGGAAAGTACAACGACTACCGTAAACCTGTATTAGACGGGCCCCTCTAATTGATGGCGCCTCTATTTGAAGTGCTCCAATATAGAGAGCCCACGAAAAATAGAAAAAACCTTCAAATACAAGTTTTACGGCATCGGAAATATTTTCAGACAATTGATATGGTAGATGTGTGCTTTCGAAGTGCATTCGGAGTATCTCCACCTCTTCGAATCTACAAATTCGCGTTCTTCTTTACCTTGTCCATTGTTTTCTCTTCTGCATTAATTCTCAAAGTTGTCGAATTCATCGGAACGGATCAAGTATTCGGAGACCATATTCTCACGGATAGTAGTTTCATTTTGGTG</canonical>
            <polymorphic>GGTCTTATGCATACTGGAACTGTTTCATCAATGATCACAGCTACCAAACCAGTCATCAACGTGGTCGTGATTGTCTTGTCAGCGATGAAGTTCAGATCTCATCAGAGACTTTTGAAGGTTTGTTGTTGTCAGAATTATTAGAACAAAAGATGACATGAATACGTATTCATTGAAATAGGTAAAATTCGATGTACAAAAAATCAGTTCGTTTGTTGAGATGGTCCAAATCCAGCTTCTCTCTTTCCGTAGTATCCAGCATAAGCAGATCCATATCCATATCCACCGTAGTATCCATTGTATGCTCCATATCCTCCGTAATAAGATGGATAATAAGAAGAGGTATATCCGTATCCGTAGTATTGAGCACTAGCCTCTTGAACCATGGAGCACATGACGAGGGCCAAGACACAGAGAAGGCTGGAAATGAATTTATATGATAAGGTTTAGAAAAGGGAAACTCACAATTTGGCGTTCATTTTCAAAGTGGAAATTGTTAGAARAATGAGTAGATTCTTGTTTGAACCTACCGAAAAGTTCCATTTTATACTGCCGCTGTTCTATTTGCTCTGAGTTTTTTTTTGGATTCTCAAACAGTTTCGCCGCAAAATGTGTCAAAAATATAACTGGTAGGATTGCACTAAAATGATCAGATCATTGAGGAAAGTACAACGACTACCGTAAACCTGTATTAGACGGGCCCCTCTAATTGATGGCGCCTCTATTTGAAGTGCTCCAATATAGAGAGCCCACGAAAAATAGAAAAAACCTTCAAATACAAGTTTTACGGCATCGGAAATATTTTCAGACAATTGATATGGTAGATGTGTGCTTTCGAAGTGCATTCGGAGTATCTCCACCTCTTCGAATCTACAAATTCGCGTTCTTCTTTACCTTGTCCATTGTTTTCTCTTCTGCATTAATTCTCAAAGTTGTCGAATTCATCGGAACGGATCAAGTATTCGGAGACCATATTCTCACGGATAGTAGTTTCATTTTGGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGGTTTAGAAAAGGGAAACTC</pcr_primer_p1>
		<pcr_primer_p2>TTTACGGTAGTCGTTGTACTTTC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TAAGGTTTAGAAAAGGGAAACTCACAATTTGGCGTTCATTTTCAAAGTGGAAATTGTTAGAAAAATGAGTAGATTCTTGTTTGAACCTACCGAAAAGTTCCATTTTATACTGCCGCTGTTCTATTTGCTCTGAGTTTTTTTTTGGATTCTCAAACAGTTTCGCCGCAAAATGTGTCAAAAATATAACTGGTAGGATTGCACTAAAATGATCAGATCATTGAGGAAAGTACAACGACTACCGTAAA</canonical_amplicon>
		<polymorphic_amplicon>TAAGGTTTAGAAAAGGGAAACTCACAATTTGGCGTTCATTTTCAAAGTGGAAATTGTTAGAARAATGAGTAGATTCTTGTTTGAACCTACCGAAAAGTTCCATTTTATACTGCCGCTGTTCTATTTGCTCTGAGTTTTTTTTTGGATTCTCAAACAGTTTCGCCGCAAAATGTGTCAAAAATATAACTGGTAGGATTGCACTAAAATGATCAGATCATTGAGGAAAGTACAACGACTACCGTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39351</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>790033</contig_pos>
        <strand>+</strand>
        <context>TGATGGCGCC[C/T]CTATTTGAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACGACTACCGTAAACCTGTATTAGACGGGCCCCTCTAATTGATGGCGCC</left_flank>
        <right_flank>CTATTTGAAGTGCTCCAATATAGAGAGCCCACGAAAAATAGAAAAAACCT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTCCAAATCCAGCTTCTCTCTTTCCGTAGTATCCAGCATAAGCAGATCCATATCCATATCCACCGTAGTATCCATTGTATGCTCCATATCCTCCGTAATAAGATGGATAATAAGAAGAGGTATATCCGTATCCGTAGTATTGAGCACTAGCCTCTTGAACCATGGAGCACATGACGAGGGCCAAGACACAGAGAAGGCTGGAAATGAATTTATATGATAAGGTTTAGAAAAGGGAAACTCACAATTTGGCGTTCATTTTCAAAGTGGAAATTGTTAGAAAAATGAGTAGATTCTTGTTTGAACCTACCGAAAAGTTCCATTTTATACTGCCGCTGTTCTATTTGCTCTGAGTTTTTTTTTGGATTCTCAAACAGTTTCGCCGCAAAATGTGTCAAAAATATAACTGGTAGGATTGCACTAAAATGATCAGATCATTGAGGAAAGTACAACGACTACCGTAAACCTGTATTAGACGGGCCCCTCTAATTGATGGCGCCTCTATTTGAAGTGCTCCAATATAGAGAGCCCACGAAAAATAGAAAAAACCTTCAAATACAAGTTTTACGGCATCGGAAATATTTTCAGACAATTGATATGGTAGATGTGTGCTTTCGAAGTGCATTCGGAGTATCTCCACCTCTTCGAATCTACAAATTCGCGTTCTTCTTTACCTTGTCCATTGTTTTCTCTTCTGCATTAATTCTCAAAGTTGTCGAATTCATCGGAACGGATCAAGTATTCGGAGACCATATTCTCACGGATAGTAGTTTCATTTTGGTGCCAGTTCTGAGTCTCTGGAATATAATTCCACTTCTTTACTATCACCTCTACAACGTTTTGGTTCGTTTCTACTGCCGAACACTGATCAAATCGATGAATCGGGAACACAAAAAACGACACTTTAGCTTGAAATTTTACTATGAACAATTCACAAGAATCACAAATGTACAAGAAGCAATTGGTGACGTCTTCAACCCACTGCTTCTGTTTTCCTTGGC</canonical>
            <polymorphic>TGGTCCAAATCCAGCTTCTCTCTTTCCGTAGTATCCAGCATAAGCAGATCCATATCCATATCCACCGTAGTATCCATTGTATGCTCCATATCCTCCGTAATAAGATGGATAATAAGAAGAGGTATATCCGTATCCGTAGTATTGAGCACTAGCCTCTTGAACCATGGAGCACATGACGAGGGCCAAGACACAGAGAAGGCTGGAAATGAATTTATATGATAAGGTTTAGAAAAGGGAAACTCACAATTTGGCGTTCATTTTCAAAGTGGAAATTGTTAGAAAAATGAGTAGATTCTTGTTTGAACCTACCGAAAAGTTCCATTTTATACTGCCGCTGTTCTATTTGCTCTGAGTTTTTTTTTGGATTCTCAAACAGTTTCGCCGCAAAATGTGTCAAAAATATAACTGGTAGGATTGCACTAAAATGATCAGATCATTGAGGAAAGTACAACGACTACCGTAAACCTGTATTAGACGGGCCCCTCTAATTGATGGCGCCYCTATTTGAAGTGCTCCAATATAGAGAGCCCACGAAAAATAGAAAAAACCTTCAAATACAAGTTTTACGGCATCGGAAATATTTTCAGACAATTGATATGGTAGATGTGTGCTTTCGAAGTGCATTCGGAGTATCTCCACCTCTTCGAATCTACAAATTCGCGTTCTTCTTTACCTTGTCCATTGTTTTCTCTTCTGCATTAATTCTCAAAGTTGTCGAATTCATCGGAACGGATCAAGTATTCGGAGACCATATTCTCACGGATAGTAGTTTCATTTTGGTGCCAGTTCTGAGTCTCTGGAATATAATTCCACTTCTTTACTATCACCTCTACAACGTTTTGGTTCGTTTCTACTGCCGAACACTGATCAAATCGATGAATCGGGAACACAAAAAACGACACTTTAGCTTGAAATTTTACTATGAACAATTCACAAGAATCACAAATGTACAAGAAGCAATTGGTGACGTCTTCAACCCACTGCTTCTGTTTTCCTTGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAAAGTACAACGACTACCGTAAA</pcr_primer_p1>
		<pcr_primer_p2>AGAAAACAATGGACAAGGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GAAAGTACAACGACTACCGTAAACCTGTATTAGACGGGCCCCTCTAATTGATGGCGCCTCTATTTGAAGTGCTCCAATATAGAGAGCCCACGAAAAATAGAAAAAACCTTCAAATACAAGTTTTACGGCATCGGAAATATTTTCAGACAATTGATATGGTAGATGTGTGCTTTCGAAGTGCATTCGGAGTATCTCCACCTCTTCGAATCTACAAATTCGCGTTCTTCTTTACCTTGTCCATTGTTTTCT</canonical_amplicon>
		<polymorphic_amplicon>GAAAGTACAACGACTACCGTAAACCTGTATTAGACGGGCCCCTCTAATTGATGGCGCCYCTATTTGAAGTGCTCCAATATAGAGAGCCCACGAAAAATAGAAAAAACCTTCAAATACAAGTTTTACGGCATCGGAAATATTTTCAGACAATTGATATGGTAGATGTGTGCTTTCGAAGTGCATTCGGAGTATCTCCACCTCTTCGAATCTACAAATTCGCGTTCTTCTTTACCTTGTCCATTGTTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39352</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>796142</contig_pos>
        <strand></strand>
        <context>taccctgact[T/C]aagtttgtac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTCGCATGAACACACCTTACAGTACAGGGTAGCGCATAATTACCCTGACT</left_flank>
        <right_flank>AAGTTTGTACTAACATAAAAATTGAGTAAAGCGTTGTACTGGGCTGAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACTCGCTCCGTTAACTTTGAAGAAGAAGGAAAAGAAGAAGGCCCTCTGAGAGGGTCCCCCCGTTTATAAGCTTCCCTTTCCTCTCCATATTTTCTCGCGACCCCCTCAACCACTATCTTGACATGAAATCAAAAATCGAATTATATCTGTTTGAGTGAGTGGGATATTTGGTAAGCATCCGATTGCACCCTCATCATTGTCATCAGTCGATTTTGAAATTAGATTTTCCCAAAAAAACGGAGTAGTGGTAATCTTTGAGCCAGTGGGAGCTATTTTTGGCACTATTGAGTACCGAGATTAGGTTAAAATTGTGGAAAATCGGAGTTCATTGGTCTTCAAAAAAATGCGTAGGTCAGAGTTTTGATCTTTCGAAACTGGTCAATTGTTAAGTTCACTCGAAAGCTGTTCTATTTTTTTCTGTTTTTTTGGCATTCCTATGGACTTTTTATTCGCATGAACACACCTTACAGTACAGGGTAGCGCATAATTACCCTGACTTAAGTTTGTACTAACATAAAAATTGAGTAAAGCGTTGTACTGGGCTGAAATTTAACGGCTAAAAATCAAATACTTCATCAATAAACTTGCTAAGGTTCAAATTATGTGATAAACTTTGAGCTGAGTTATAGCTTGTCAAAATAGCTTCATCTCATGACAATCACAACTGTATCCTTGGACAATCATAACAAAACTTAGAATTGAGGAATCGCTTTGAAAATTTCAGTAGCTTAGAATCAAACCTAAATTCATATTCATACAAGTTTTTGTGCATTCAAATCAGTTATGTCTAAAGATATACCTGTTTTTAACAGTCCGGGAAATTGTGTGCCACTCTGTGACTTCTGATTCTTTCAGAATACCAAAAGCCCAACTCCGTTGTTTCAGAAGCAACATTTAGAGAGAAAAAATACTATAAAAAAGAGCAAAAAGTAGAGGTAAACAAGAAACAAACACCACGAGAGCAAATTCCGCAACAACTCTTTTCAAGCGGAACGACCC</canonical>
            <polymorphic>AACTCGCTCCGTTAACTTTGAAGAAGAAGGAAAAGAAGAAGGCCCTCTGAGAGGGTCCCCCCGTTTATAAGCTTCCCTTTCCTCTCCATATTTTCTCGCGACCCCCTCAACCACTATCTTGACATGAAATCAAAAATCGAATTATATCTGTTTGAGTGAGTGGGATATTTGGTAAGCATCCGATTGCACCCTCATCATTGTCATCAGTCGATTTTGAAATTAGATTTTCCCAAAAAAACGGAGTAGTGGTAATCTTTGAGCCAGTGGGAGCTATTTTTGGCACTATTGAGTACCGAGATTAGGTTAAAATTGTGGAAAATCGGAGTTCATTGGTCTTCAAAAAAATGCGTAGGTCAGAGTTTTGATCTTTCGAAACTGGTCAATTGTTAAGTTCACTCGAAAGCTGTTCTATTTTTTTCTGTTTTTTTGGCATTCCTATGGACTTTTTATTCGCATGAACACACCTTACAGTACAGGGTAGCGCATAATTACCCTGACTYAAGTTTGTACTAACATAAAAATTGAGTAAAGCGTTGTACTGGGCTGAAATTTAACGGCTAAAAATCAAATACTTCATCAATAAACTTGCTAAGGTTCAAATTATGTGATAAACTTTGAGCTGAGTTATAGCTTGTCAAAATAGCTTCATCTCATGACAATCACAACTGTATCCTTGGACAATCATAACAAAACTTAGAATTGAGGAATCGCTTTGAAAATTTCAGTAGCTTAGAATCAAACCTAAATTCATATTCATACAAGTTTTTGTGCATTCAAATCAGTTATGTCTAAAGATATACCTGTTTTTAACAGTCCGGGAAATTGTGTGCCACTCTGTGACTTCTGATTCTTTCAGAATACCAAAAGCCCAACTCCGTTGTTTCAGAAGCAACATTTAGAGAGAAAAAATACTATAAAAAAGAGCAAAAAGTAGAGGTAAACAAGAAACAAACACCACGAGAGCAAATTCCGCAACAACTCTTTTCAAGCGGAACGACCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTTAAG</site>
                <isoschizomers>
                    <enzyme>AflII</enzyme>
                    <enzyme>BfrI</enzyme>
                    <enzyme>BspTI</enzyme>
                    <enzyme>Bst98I</enzyme>
                    <enzyme>MspCI</enzyme>
                    <enzyme>Vha464I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>292 256 193 112 83 52 12</canonical_bands>
                <polymorphic_bands>292 256 193 164 83 12</polymorphic_bands>
            </assay>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTATTCGCATGAACACAC</pcr_primer_p1>
		<pcr_primer_p2>TCTGAAAGAATCAGAAGTCACA</pcr_primer_p2>
		<pcr_amplicon_size>414</pcr_amplicon_size>
		<canonical_amplicon>TTTTTATTCGCATGAACACACCTTACAGTACAGGGTAGCGCATAATTACCCTGACTTAAGTTTGTACTAACATAAAAATTGAGTAAAGCGTTGTACTGGGCTGAAATTTAACGGCTAAAAATCAAATACTTCATCAATAAACTTGCTAAGGTTCAAATTATGTGATAAACTTTGAGCTGAGTTATAGCTTGTCAAAATAGCTTCATCTCATGACAATCACAACTGTATCCTTGGACAATCATAACAAAACTTAGAATTGAGGAATCGCTTTGAAAATTTCAGTAGCTTAGAATCAAACCTAAATTCATATTCATACAAGTTTTTGTGCATTCAAATCAGTTATGTCTAAAGATATACCTGTTTTTAACAGTCCGGGAAATTGTGTGCCACTCTGTGACTTCTGATTCTTTCAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTATTCGCATGAACACACCTTACAGTACAGGGTAGCGCATAATTACCCTGACTYAAGTTTGTACTAACATAAAAATTGAGTAAAGCGTTGTACTGGGCTGAAATTTAACGGCTAAAAATCAAATACTTCATCAATAAACTTGCTAAGGTTCAAATTATGTGATAAACTTTGAGCTGAGTTATAGCTTGTCAAAATAGCTTCATCTCATGACAATCACAACTGTATCCTTGGACAATCATAACAAAACTTAGAATTGAGGAATCGCTTTGAAAATTTCAGTAGCTTAGAATCAAACCTAAATTCATATTCATACAAGTTTTTGTGCATTCAAATCAGTTATGTCTAAAGATATACCTGTTTTTAACAGTCCGGGAAATTGTGTGCCACTCTGTGACTTCTGATTCTTTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39353</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>796236</contig_pos>
        <strand></strand>
        <context>acttgctaag[G/T]ttyaaattat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTGAAATTTAACGGCTAAAAATCAAATACTTCATCAATAAACTTGCTAAG</left_flank>
        <right_flank>TTCAAATTATGTGATAAACTTTGAGCTGAGTTATAGCTTGTCAAAATAGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGCGACCCCCTCAACCACTATCTTGACATGAAATCAAAAATCGAATTATATCTGTTTGAGTGAGTGGGATATTTGGTAAGCATCCGATTGCACCCTCATCATTGTCATCAGTCGATTTTGAAATTAGATTTTCCCAAAAAAACGGAGTAGTGGTAATCTTTGAGCCAGTGGGAGCTATTTTTGGCACTATTGAGTACCGAGATTAGGTTAAAATTGTGGAAAATCGGAGTTCATTGGTCTTCAAAAAAATGCGTAGGTCAGAGTTTTGATCTTTCGAAACTGGTCAATTGTTAAGTTCACTCGAAAGCTGTTCTATTTTTTTCTGTTTTTTTGGCATTCCTATGGACTTTTTATTCGCATGAACACACCTTACAGTACAGGGTAGCGCATAATTACCCTGACTTAAGTTTGTACTAACATAAAAATTGAGTAAAGCGTTGTACTGGGCTGAAATTTAACGGCTAAAAATCAAATACTTCATCAATAAACTTGCTAAGGTTCAAATTATGTGATAAACTTTGAGCTGAGTTATAGCTTGTCAAAATAGCTTCATCTCATGACAATCACAACTGTATCCTTGGACAATCATAACAAAACTTAGAATTGAGGAATCGCTTTGAAAATTTCAGTAGCTTAGAATCAAACCTAAATTCATATTCATACAAGTTTTTGTGCATTCAAATCAGTTATGTCTAAAGATATACCTGTTTTTAACAGTCCGGGAAATTGTGTGCCACTCTGTGACTTCTGATTCTTTCAGAATACCAAAAGCCCAACTCCGTTGTTTCAGAAGCAACATTTAGAGAGAAAAAATACTATAAAAAAGAGCAAAAAGTAGAGGTAAACAAGAAACAAACACCACGAGAGCAAATTCCGCAACAACTCTTTTCAAGCGGAACGACCCTGACCACATTCTTCGAACAATGACCATGCCGGAAATGATCCTAGAGCAACGACGTCAAAAAGAAAGTGGAGGTGGCTCCACTACTATGAATCGA</canonical>
            <polymorphic>CTCGCGACCCCCTCAACCACTATCTTGACATGAAATCAAAAATCGAATTATATCTGTTTGAGTGAGTGGGATATTTGGTAAGCATCCGATTGCACCCTCATCATTGTCATCAGTCGATTTTGAAATTAGATTTTCCCAAAAAAACGGAGTAGTGGTAATCTTTGAGCCAGTGGGAGCTATTTTTGGCACTATTGAGTACCGAGATTAGGTTAAAATTGTGGAAAATCGGAGTTCATTGGTCTTCAAAAAAATGCGTAGGTCAGAGTTTTGATCTTTCGAAACTGGTCAATTGTTAAGTTCACTCGAAAGCTGTTCTATTTTTTTCTGTTTTTTTGGCATTCCTATGGACTTTTTATTCGCATGAACACACCTTACAGTACAGGGTAGCGCATAATTACCCTGACTTAAGTTTGTACTAACATAAAAATTGAGTAAAGCGTTGTACTGGGCTGAAATTTAACGGCTAAAAATCAAATACTTCATCAATAAACTTGCTAAGKTTCAAATTATGTGATAAACTTTGAGCTGAGTTATAGCTTGTCAAAATAGCTTCATCTCATGACAATCACAACTGTATCCTTGGACAATCATAACAAAACTTAGAATTGAGGAATCGCTTTGAAAATTTCAGTAGCTTAGAATCAAACCTAAATTCATATTCATACAAGTTTTTGTGCATTCAAATCAGTTATGTCTAAAGATATACCTGTTTTTAACAGTCCGGGAAATTGTGTGCCACTCTGTGACTTCTGATTCTTTCAGAATACCAAAAGCCCAACTCCGTTGTTTCAGAAGCAACATTTAGAGAGAAAAAATACTATAAAAAAGAGCAAAAAGTAGAGGTAAACAAGAAACAAACACCACGAGAGCAAATTCCGCAACAACTCTTTTCAAGCGGAACGACCCTGACCACATTCTTCGAACAATGACCATGCCGGAAATGATCCTAGAGCAACGACGTCAAAAAGAAAGTGGAGGTGGCTCCACTACTATGAATCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTATTCGCATGAACACAC</pcr_primer_p1>
		<pcr_primer_p2>TCTGAAAGAATCAGAAGTCACA</pcr_primer_p2>
		<pcr_amplicon_size>414</pcr_amplicon_size>
		<canonical_amplicon>TTTTTATTCGCATGAACACACCTTACAGTACAGGGTAGCGCATAATTACCCTGACTTAAGTTTGTACTAACATAAAAATTGAGTAAAGCGTTGTACTGGGCTGAAATTTAACGGCTAAAAATCAAATACTTCATCAATAAACTTGCTAAGGTTCAAATTATGTGATAAACTTTGAGCTGAGTTATAGCTTGTCAAAATAGCTTCATCTCATGACAATCACAACTGTATCCTTGGACAATCATAACAAAACTTAGAATTGAGGAATCGCTTTGAAAATTTCAGTAGCTTAGAATCAAACCTAAATTCATATTCATACAAGTTTTTGTGCATTCAAATCAGTTATGTCTAAAGATATACCTGTTTTTAACAGTCCGGGAAATTGTGTGCCACTCTGTGACTTCTGATTCTTTCAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTATTCGCATGAACACACCTTACAGTACAGGGTAGCGCATAATTACCCTGACTTAAGTTTGTACTAACATAAAAATTGAGTAAAGCGTTGTACTGGGCTGAAATTTAACGGCTAAAAATCAAATACTTCATCAATAAACTTGCTAAGKTTCAAATTATGTGATAAACTTTGAGCTGAGTTATAGCTTGTCAAAATAGCTTCATCTCATGACAATCACAACTGTATCCTTGGACAATCATAACAAAACTTAGAATTGAGGAATCGCTTTGAAAATTTCAGTAGCTTAGAATCAAACCTAAATTCATATTCATACAAGTTTTTGTGCATTCAAATCAGTTATGTCTAAAGATATACCTGTTTTTAACAGTCCGGGAAATTGTGTGCCACTCTGTGACTTCTGATTCTTTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39354</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>796239</contig_pos>
        <strand></strand>
        <context>tgctaagktt[C/T]aaattatgtg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTTAACGGCTAAAAATCAAATACTTCATCAATAAACTTGCTAAGGTT</left_flank>
        <right_flank>AAATTATGTGATAAACTTTGAGCTGAGTTATAGCTTGTCAAAATAGCTTC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGACCCCCTCAACCACTATCTTGACATGAAATCAAAAATCGAATTATATCTGTTTGAGTGAGTGGGATATTTGGTAAGCATCCGATTGCACCCTCATCATTGTCATCAGTCGATTTTGAAATTAGATTTTCCCAAAAAAACGGAGTAGTGGTAATCTTTGAGCCAGTGGGAGCTATTTTTGGCACTATTGAGTACCGAGATTAGGTTAAAATTGTGGAAAATCGGAGTTCATTGGTCTTCAAAAAAATGCGTAGGTCAGAGTTTTGATCTTTCGAAACTGGTCAATTGTTAAGTTCACTCGAAAGCTGTTCTATTTTTTTCTGTTTTTTTGGCATTCCTATGGACTTTTTATTCGCATGAACACACCTTACAGTACAGGGTAGCGCATAATTACCCTGACTTAAGTTTGTACTAACATAAAAATTGAGTAAAGCGTTGTACTGGGCTGAAATTTAACGGCTAAAAATCAAATACTTCATCAATAAACTTGCTAAGGTTCAAATTATGTGATAAACTTTGAGCTGAGTTATAGCTTGTCAAAATAGCTTCATCTCATGACAATCACAACTGTATCCTTGGACAATCATAACAAAACTTAGAATTGAGGAATCGCTTTGAAAATTTCAGTAGCTTAGAATCAAACCTAAATTCATATTCATACAAGTTTTTGTGCATTCAAATCAGTTATGTCTAAAGATATACCTGTTTTTAACAGTCCGGGAAATTGTGTGCCACTCTGTGACTTCTGATTCTTTCAGAATACCAAAAGCCCAACTCCGTTGTTTCAGAAGCAACATTTAGAGAGAAAAAATACTATAAAAAAGAGCAAAAAGTAGAGGTAAACAAGAAACAAACACCACGAGAGCAAATTCCGCAACAACTCTTTTCAAGCGGAACGACCCTGACCACATTCTTCGAACAATGACCATGCCGGAAATGATCCTAGAGCAACGACGTCAAAAAGAAAGTGGAGGTGGCTCCACTACTATGAATCGAGAA</canonical>
            <polymorphic>GCGACCCCCTCAACCACTATCTTGACATGAAATCAAAAATCGAATTATATCTGTTTGAGTGAGTGGGATATTTGGTAAGCATCCGATTGCACCCTCATCATTGTCATCAGTCGATTTTGAAATTAGATTTTCCCAAAAAAACGGAGTAGTGGTAATCTTTGAGCCAGTGGGAGCTATTTTTGGCACTATTGAGTACCGAGATTAGGTTAAAATTGTGGAAAATCGGAGTTCATTGGTCTTCAAAAAAATGCGTAGGTCAGAGTTTTGATCTTTCGAAACTGGTCAATTGTTAAGTTCACTCGAAAGCTGTTCTATTTTTTTCTGTTTTTTTGGCATTCCTATGGACTTTTTATTCGCATGAACACACCTTACAGTACAGGGTAGCGCATAATTACCCTGACTTAAGTTTGTACTAACATAAAAATTGAGTAAAGCGTTGTACTGGGCTGAAATTTAACGGCTAAAAATCAAATACTTCATCAATAAACTTGCTAAGGTTYAAATTATGTGATAAACTTTGAGCTGAGTTATAGCTTGTCAAAATAGCTTCATCTCATGACAATCACAACTGTATCCTTGGACAATCATAACAAAACTTAGAATTGAGGAATCGCTTTGAAAATTTCAGTAGCTTAGAATCAAACCTAAATTCATATTCATACAAGTTTTTGTGCATTCAAATCAGTTATGTCTAAAGATATACCTGTTTTTAACAGTCCGGGAAATTGTGTGCCACTCTGTGACTTCTGATTCTTTCAGAATACCAAAAGCCCAACTCCGTTGTTTCAGAAGCAACATTTAGAGAGAAAAAATACTATAAAAAAGAGCAAAAAGTAGAGGTAAACAAGAAACAAACACCACGAGAGCAAATTCCGCAACAACTCTTTTCAAGCGGAACGACCCTGACCACATTCTTCGAACAATGACCATGCCGGAAATGATCCTAGAGCAACGACGTCAAAAAGAAAGTGGAGGTGGCTCCACTACTATGAATCGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTATTCGCATGAACACAC</pcr_primer_p1>
		<pcr_primer_p2>TCTGAAAGAATCAGAAGTCACA</pcr_primer_p2>
		<pcr_amplicon_size>414</pcr_amplicon_size>
		<canonical_amplicon>TTTTTATTCGCATGAACACACCTTACAGTACAGGGTAGCGCATAATTACCCTGACTTAAGTTTGTACTAACATAAAAATTGAGTAAAGCGTTGTACTGGGCTGAAATTTAACGGCTAAAAATCAAATACTTCATCAATAAACTTGCTAAGGTTCAAATTATGTGATAAACTTTGAGCTGAGTTATAGCTTGTCAAAATAGCTTCATCTCATGACAATCACAACTGTATCCTTGGACAATCATAACAAAACTTAGAATTGAGGAATCGCTTTGAAAATTTCAGTAGCTTAGAATCAAACCTAAATTCATATTCATACAAGTTTTTGTGCATTCAAATCAGTTATGTCTAAAGATATACCTGTTTTTAACAGTCCGGGAAATTGTGTGCCACTCTGTGACTTCTGATTCTTTCAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTATTCGCATGAACACACCTTACAGTACAGGGTAGCGCATAATTACCCTGACTTAAGTTTGTACTAACATAAAAATTGAGTAAAGCGTTGTACTGGGCTGAAATTTAACGGCTAAAAATCAAATACTTCATCAATAAACTTGCTAAGGTTYAAATTATGTGATAAACTTTGAGCTGAGTTATAGCTTGTCAAAATAGCTTCATCTCATGACAATCACAACTGTATCCTTGGACAATCATAACAAAACTTAGAATTGAGGAATCGCTTTGAAAATTTCAGTAGCTTAGAATCAAACCTAAATTCATATTCATACAAGTTTTTGTGCATTCAAATCAGTTATGTCTAAAGATATACCTGTTTTTAACAGTCCGGGAAATTGTGTGCCACTCTGTGACTTCTGATTCTTTCAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39355</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>834765</contig_pos>
        <strand>+</strand>
        <context>TCAGAAATGG[A/C]AAAATTACTA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TAATCAATTTCTATATTTTCAGAGATATCGACTCAAACGCTCAGAAATGG</left_flank>
        <right_flank>AAAATTACTATTTCGACATCAATCCAGGACAACATGTGCTCCATTTTGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTCAGTTCCCAGTGAAAATGAGTTTTTAGGTGGCTACTTCTTATACGCAGGTGGCACTGCCGCAACTCCAGGAGACACTTTCATTCTTTCATCAAACCATCCATTGAGCATTTCTGAACCAGCCAGAGTTGATTTCTTTGTTTATCAAGCTGGTATTCGAGGACAATTTAGAGTGTGTATAGATGATAACGAGGATTGTCCAGTGGTTTTGGAGGGGAAGTGAGTTGACCCGGATACACCTTTAAACCTCTATTAGAACACTATCAAGTTTGAGCTCTATTGTCCTATGCAAGATATCAAAAAAGTGTCAACTGACAAAACATTTCTGATAATCTAATAAACAAATAATCAGTTGACAAATTTCTTATGTCTTTGACAGGTACCGAGATAAATTGTCTCAAAGTTAAAAGTTAGAGGGCCCTTCTATTACAGGTTGTACGGTATGTTAATCAATTTCTATATTTTCAGAGATATCGACTCAAACGCTCAGAAATGGCAAAATTACTATTTCGACATCAATCCAGGACAACATGTGCTCCATTTTGTTGTCGAAGGACTCCACAACAATTATGCGATTGGATTGGATAATATTCAACTGTTGAACCGATTCGGGACTAGTTCCTTGTCTTGTTAAGAAAAACAAATGTATTTCCTAAAAAAATATTTATTTAACGAATCTATGAAAGTCAAAAAACTAGACAGCAAGAAGAAAGTTAAACCAGCAAATGTCCATTTTTCAATTAAAAAAACAAATAGGTGAATTGAAATTGCCAAATAAAATACTCAGTGAGGAAGGGGTGTGATTTGTTGCATGTAGTTGTTTGTTAGAGAAATCTAGTTCTCCCAGTTCAGACAAAAGCGAATAGTTTGCGAGGGGGTATATGAGATGGATACAGTAGATTTTTACATTTTACAAAATTCAATAATTTCTTCTGTTTTACAACTTCTTCTTGGCGCTAACCATGAACATTCCATTGATCTCATAGAGGACACATCC</canonical>
            <polymorphic>AAGTTCAGTTCCCAGTGAAAATGAGTTTTTAGGTGGCTACTTCTTATACGCAGGTGGCACTGCCGCAACTCCAGGAGACACTTTCATTCTTTCATCAAACCATCCATTGAGCATTTCTGAACCAGCCAGAGTTGATTTCTTTGTTTATCAAGCTGGTATTCGAGGACAATTTAGAGTGTGTATAGATGATAACGAGGATTGTCCAGTGGTTTTGGAGGGGAAGTGAGTTGACCCGGATACACCTTTAAACCTCTATTAGAACACTATCAAGTTTGAGCTCTATTGTCCTATGCAAGATATCAAAAAAGTGTCAACTGACAAAACATTTCTGATAATCTAATAAACAAATAATCAGTTGACAAATTTCTTATGTCTTTGACAGGTACCGAGATAAATTGTCTCAAAGTTAAAAGTTAGAGGGCCCTTCTATTACAGGTTGTACGGTATGTTAATCAATTTCTATATTTTCAGAGATATCGACTCAAACGCTCAGAAATGGMAAAATTACTATTTCGACATCAATCCAGGACAACATGTGCTCCATTTTGTTGTCGAAGGACTCCACAACAATTATGCGATTGGATTGGATAATATTCAACTGTTGAACCGATTCGGGACTAGTTCCTTGTCTTGTTAAGAAAAACAAATGTATTTCCTAAAAAAATATTTATTTAACGAATCTATGAAAGTCAAAAAACTAGACAGCAAGAAGAAAGTTAAACCAGCAAATGTCCATTTTTCAATTAAAAAAACAAATAGGTGAATTGAAATTGCCAAATAAAATACTCAGTGAGGAAGGGGTGTGATTTGTTGCATGTAGTTGTTTGTTAGAGAAATCTAGTTCTCCCAGTTCAGACAAAAGCGAATAGTTTGCGAGGGGGTATATGAGATGGATACAGTAGATTTTTACATTTTACAAAATTCAATAATTTCTTCTGTTTTACAACTTCTTCTTGGCGCTAACCATGAACATTCCATTGATCTCATAGAGGACACATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAACGAGGATTGTCCAGTG</pcr_primer_p1>
		<pcr_primer_p2>GACAACAAAATGGAGCACAT</pcr_primer_p2>
		<pcr_amplicon_size>365</pcr_amplicon_size>
		<canonical_amplicon>ATAACGAGGATTGTCCAGTGGTTTTGGAGGGGAAGTGAGTTGACCCGGATACACCTTTAAACCTCTATTAGAACACTATCAAGTTTGAGCTCTATTGTCCTATGCAAGATATCAAAAAAGTGTCAACTGACAAAACATTTCTGATAATCTAATAAACAAATAATCAGTTGACAAATTTCTTATGTCTTTGACAGGTACCGAGATAAATTGTCTCAAAGTTAAAAGTTAGAGGGCCCTTCTATTACAGGTTGTACGGTATGTTAATCAATTTCTATATTTTCAGAGATATCGACTCAAACGCTCAGAAATGGCAAAATTACTATTTCGACATCAATCCAGGACAACATGTGCTCCATTTTGTTGTC</canonical_amplicon>
		<polymorphic_amplicon>ATAACGAGGATTGTCCAGTGGTTTTGGAGGGGAAGTGAGTTGACCCGGATACACCTTTAAACCTCTATTAGAACACTATCAAGTTTGAGCTCTATTGTCCTATGCAAGATATCAAAAAAGTGTCAACTGACAAAACATTTCTGATAATCTAATAAACAAATAATCAGTTGACAAATTTCTTATGTCTTTGACAGGTACCGAGATAAATTGTCTCAAAGTTAAAAGTTAGAGGGCCCTTCTATTACAGGTTGTACGGTATGTTAATCAATTTCTATATTTTCAGAGATATCGACTCAAACGCTCAGAAATGGMAAAATTACTATTTCGACATCAATCCAGGACAACATGTGCTCCATTTTGTTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39356</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>878068</contig_pos>
        <strand>+</strand>
        <context>AAATATTCAA[A/G]ATGACATGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCAATCGATAACAGATATTTGGGACTGTCGTGGAACATCGAAATATTCAA</left_flank>
        <right_flank>ATGACATGAGCAATGCAGGGGATTGTTTCAATAAAGAACATATATTTCCA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAGAGGGCGACGGCCAATCTAAACTTTGAAAAATGAAGTTTGGGCATCACAGTTTTGAAGTTACTTTATCAATTGCAATAGCGGCTAGAAGGGCTGAAAGAATAGAGGAGGAGCTACATAAACTGTTTGCCACGGCAGATCCTTCCGGAGAGAAACCAACATTTTGGAGTAGAAATGTTCCGAAAAATGATATTGCCGCAATGCCACTGAAAATAAAATTTCGAGAAGTAAAAACCTAATTGTAAGAAAATATGTTACCTAAAAGCCACAGAGAAGTTAATAGCGACAGAAAGGGATAATGCACGAGAAGCAGCTTTATCTTTGAGAACTTCTCGAAGAGTCTTGTTTTCCGTTGCAGTTTCACTTCTCAGATCTTCCAGAACCATCTTCACTTGACACGATTTTCCATAATACGTATATAGCGATCGTTCAGCTTCGATACTTTTTCCAATCGATAACAGATATTTGGGACTGTCGTGGAACATCGAAATATTCAAGATGACATGAGCAATGCAGGGGATTGTTTCAATAAAGAACATATATTTCCATAAGGATACGGTACCTAACAAATAGGGAGTTCCAAGTGAGGCGGCTAGCACGAACGCAATATTTCCAATGAGACCACTCAAAGAATTCGTCATACCGCGGTATTTGGCTAGAAATACTTAAAAGTTAAGGTTCTAGATATAATGGTTGAATTTCTGTAAATAAATGATTACCTGGACTAATTTCTGTGATAAAAACCCCTTGGGCCGATATCCCAATTGCCAATCCGATTCCTGACAGTATTCTTGAAATCGGTAAGAGTTCTACGAGGTTCAGAGAATAGGCAAAACCAAATACCGGTGTAGAAAATAGTAAAATAGTTGCAGCTGTGAGAAGAGTTTTCCTTGGTCCGATTCTGGAAAGGAGGTGGACCGAAAGATAAGATCCAACCATGGCTCCAATGAAAAGACATCCTGCCAATGAAGACCATAAAATGGAAAGTTGAGAAGATG</canonical>
            <polymorphic>AAAAGAGGGCGACGGCCAATCTAAACTTTGAAAAATGAAGTTTGGGCATCACAGTTTTGAAGTTACTTTATCAATTGCAATAGCGGCTAGAAGGGCTGAAAGAATAGAGGAGGAGCTACATAAACTGTTTGCCACGGCAGATCCTTCCGGAGAGAAACCAACATTTTGGAGTAGAAATGTTCCGAAAAATGATATTGCCGCAATGCCACTGAAAATAAAATTTCGAGAAGTAAAAACCTAATTGTAAGAAAATATGTTACCTAAAAGCCACAGAGAAGTTAATAGCGACAGAAAGGGATAATGCACGAGAAGCAGCTTTATCTTTGAGAACTTCTCGAAGAGTCTTGTTTTCCGTTGCAGTTTCACTTCTCAGATCTTCCAGAACCATCTTCACTTGACACGATTTTCCATAATACGTATATAGCGATCGTTCAGCTTCGATACTTTTTCCAATCGATAACAGATATTTGGGACTGTCGTGGAACATCGAAATATTCAARATGACATGAGCAATGCAGGGGATTGTTTCAATAAAGAACATATATTTCCATAAGGATACGGTACCTAACAAATAGGGAGTTCCAAGTGAGGCGGCTAGCACGAACGCAATATTTCCAATGAGACCACTCAAAGAATTCGTCATACCGCGGTATTTGGCTAGAAATACTTAAAAGTTAAGGTTCTAGATATAATGGTTGAATTTCTGTAAATAAATGATTACCTGGACTAATTTCTGTGATAAAAACCCCTTGGGCCGATATCCCAATTGCCAATCCGATTCCTGACAGTATTCTTGAAATCGGTAAGAGTTCTACGAGGTTCAGAGAATAGGCAAAACCAAATACCGGTGTAGAAAATAGTAAAATAGTTGCAGCTGTGAGAAGAGTTTTCCTTGGTCCGATTCTGGAAAGGAGGTGGACCGAAAGATAAGATCCAACCATGGCTCCAATGAAAAGACATCCTGCCAATGAAGACCATAAAATGGAAAGTTGAGAAGATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>186 147 118 111 110 98 96 77 45 12</canonical_bands>
                <polymorphic_bands>304 147 111 110 98 96 77 45 12</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTGACACGATTTTCCATAATA</pcr_primer_p1>
		<pcr_primer_p2>GAATTCTTTGAGTGGTCTCATT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACTTGACACGATTTTCCATAATACGTATATAGCGATCGTTCAGCTTCGATACTTTTTCCAATCGATAACAGATATTTGGGACTGTCGTGGAACATCGAAATATTCAAGATGACATGAGCAATGCAGGGGATTGTTTCAATAAAGAACATATATTTCCATAAGGATACGGTACCTAACAAATAGGGAGTTCCAAGTGAGGCGGCTAGCACGAACGCAATATTTCCAATGAGACCACTCAAAGAATTC</canonical_amplicon>
		<polymorphic_amplicon>ACTTGACACGATTTTCCATAATACGTATATAGCGATCGTTCAGCTTCGATACTTTTTCCAATCGATAACAGATATTTGGGACTGTCGTGGAACATCGAAATATTCAARATGACATGAGCAATGCAGGGGATTGTTTCAATAAAGAACATATATTTCCATAAGGATACGGTACCTAACAAATAGGGAGTTCCAAGTGAGGCGGCTAGCACGAACGCAATATTTCCAATGAGACCACTCAAAGAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39357</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>878128</contig_pos>
        <strand>+</strand>
        <context>ATAAGGATAC[A/G]GTACCTAACA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCAATGCAGGGGATTGTTTCAATAAAGAACATATATTTCCATAAGGATAC</left_flank>
        <right_flank>GTACCTAACAAATAGGGAGTTCCAAGTGAGGCGGCTAGCACGAACGCAAT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTACTTTATCAATTGCAATAGCGGCTAGAAGGGCTGAAAGAATAGAGGAGGAGCTACATAAACTGTTTGCCACGGCAGATCCTTCCGGAGAGAAACCAACATTTTGGAGTAGAAATGTTCCGAAAAATGATATTGCCGCAATGCCACTGAAAATAAAATTTCGAGAAGTAAAAACCTAATTGTAAGAAAATATGTTACCTAAAAGCCACAGAGAAGTTAATAGCGACAGAAAGGGATAATGCACGAGAAGCAGCTTTATCTTTGAGAACTTCTCGAAGAGTCTTGTTTTCCGTTGCAGTTTCACTTCTCAGATCTTCCAGAACCATCTTCACTTGACACGATTTTCCATAATACGTATATAGCGATCGTTCAGCTTCGATACTTTTTCCAATCGATAACAGATATTTGGGACTGTCGTGGAACATCGAAATATTCAAGATGACATGAGCAATGCAGGGGATTGTTTCAATAAAGAACATATATTTCCATAAGGATACGGTACCTAACAAATAGGGAGTTCCAAGTGAGGCGGCTAGCACGAACGCAATATTTCCAATGAGACCACTCAAAGAATTCGTCATACCGCGGTATTTGGCTAGAAATACTTAAAAGTTAAGGTTCTAGATATAATGGTTGAATTTCTGTAAATAAATGATTACCTGGACTAATTTCTGTGATAAAAACCCCTTGGGCCGATATCCCAATTGCCAATCCGATTCCTGACAGTATTCTTGAAATCGGTAAGAGTTCTACGAGGTTCAGAGAATAGGCAAAACCAAATACCGGTGTAGAAAATAGTAAAATAGTTGCAGCTGTGAGAAGAGTTTTCCTTGGTCCGATTCTGGAAAGGAGGTGGACCGAAAGATAAGATCCAACCATGGCTCCAATGAAAAGACATCCTGCCAATGAAGACCATAAAATGGAAAGTTGAGAAGATGAGAGAATGAAGGAATAACGTCTGAAATCAGAGAAATGTTGTTTTGTGTTCAATAAAATAT</canonical>
            <polymorphic>AGTTACTTTATCAATTGCAATAGCGGCTAGAAGGGCTGAAAGAATAGAGGAGGAGCTACATAAACTGTTTGCCACGGCAGATCCTTCCGGAGAGAAACCAACATTTTGGAGTAGAAATGTTCCGAAAAATGATATTGCCGCAATGCCACTGAAAATAAAATTTCGAGAAGTAAAAACCTAATTGTAAGAAAATATGTTACCTAAAAGCCACAGAGAAGTTAATAGCGACAGAAAGGGATAATGCACGAGAAGCAGCTTTATCTTTGAGAACTTCTCGAAGAGTCTTGTTTTCCGTTGCAGTTTCACTTCTCAGATCTTCCAGAACCATCTTCACTTGACACGATTTTCCATAATACGTATATAGCGATCGTTCAGCTTCGATACTTTTTCCAATCGATAACAGATATTTGGGACTGTCGTGGAACATCGAAATATTCAAGATGACATGAGCAATGCAGGGGATTGTTTCAATAAAGAACATATATTTCCATAAGGATACRGTACCTAACAAATAGGGAGTTCCAAGTGAGGCGGCTAGCACGAACGCAATATTTCCAATGAGACCACTCAAAGAATTCGTCATACCGCGGTATTTGGCTAGAAATACTTAAAAGTTAAGGTTCTAGATATAATGGTTGAATTTCTGTAAATAAATGATTACCTGGACTAATTTCTGTGATAAAAACCCCTTGGGCCGATATCCCAATTGCCAATCCGATTCCTGACAGTATTCTTGAAATCGGTAAGAGTTCTACGAGGTTCAGAGAATAGGCAAAACCAAATACCGGTGTAGAAAATAGTAAAATAGTTGCAGCTGTGAGAAGAGTTTTCCTTGGTCCGATTCTGGAAAGGAGGTGGACCGAAAGATAAGATCCAACCATGGCTCCAATGAAAAGACATCCTGCCAATGAAGACCATAAAATGGAAAGTTGAGAAGATGAGAGAATGAAGGAATAACGTCTGAAATCAGAGAAATGTTGTTTTGTGTTCAATAAAATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGTACC</site>
                <isoschizomers>
                    <enzyme>Acc65I</enzyme>
                    <enzyme>Asp718I</enzyme>
                    <enzyme>KpnI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 382 116</canonical_bands>
                <polymorphic_bands>884 116</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTGACACGATTTTCCATAATA</pcr_primer_p1>
		<pcr_primer_p2>GAATTCTTTGAGTGGTCTCATT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>ACTTGACACGATTTTCCATAATACGTATATAGCGATCGTTCAGCTTCGATACTTTTTCCAATCGATAACAGATATTTGGGACTGTCGTGGAACATCGAAATATTCAAGATGACATGAGCAATGCAGGGGATTGTTTCAATAAAGAACATATATTTCCATAAGGATACGGTACCTAACAAATAGGGAGTTCCAAGTGAGGCGGCTAGCACGAACGCAATATTTCCAATGAGACCACTCAAAGAATTC</canonical_amplicon>
		<polymorphic_amplicon>ACTTGACACGATTTTCCATAATACGTATATAGCGATCGTTCAGCTTCGATACTTTTTCCAATCGATAACAGATATTTGGGACTGTCGTGGAACATCGAAATATTCAAGATGACATGAGCAATGCAGGGGATTGTTTCAATAAAGAACATATATTTCCATAAGGATACRGTACCTAACAAATAGGGAGTTCCAAGTGAGGCGGCTAGCACGAACGCAATATTTCCAATGAGACCACTCAAAGAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39358</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>878181</contig_pos>
        <strand>+</strand>
        <context>AACGCAATAT[A/T]TCCAATGAGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCTAACAAATAGGGAGTTCCAAGTGAGGCGGCTAGCACGAACGCAATAT</left_flank>
        <right_flank>TCCAATGAGACCACTCAAAGAATTCGTCATACCGCGGTATTTGGCTAGAA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCTACATAAACTGTTTGCCACGGCAGATCCTTCCGGAGAGAAACCAACATTTTGGAGTAGAAATGTTCCGAAAAATGATATTGCCGCAATGCCACTGAAAATAAAATTTCGAGAAGTAAAAACCTAATTGTAAGAAAATATGTTACCTAAAAGCCACAGAGAAGTTAATAGCGACAGAAAGGGATAATGCACGAGAAGCAGCTTTATCTTTGAGAACTTCTCGAAGAGTCTTGTTTTCCGTTGCAGTTTCACTTCTCAGATCTTCCAGAACCATCTTCACTTGACACGATTTTCCATAATACGTATATAGCGATCGTTCAGCTTCGATACTTTTTCCAATCGATAACAGATATTTGGGACTGTCGTGGAACATCGAAATATTCAAGATGACATGAGCAATGCAGGGGATTGTTTCAATAAAGAACATATATTTCCATAAGGATACGGTACCTAACAAATAGGGAGTTCCAAGTGAGGCGGCTAGCACGAACGCAATATTTCCAATGAGACCACTCAAAGAATTCGTCATACCGCGGTATTTGGCTAGAAATACTTAAAAGTTAAGGTTCTAGATATAATGGTTGAATTTCTGTAAATAAATGATTACCTGGACTAATTTCTGTGATAAAAACCCCTTGGGCCGATATCCCAATTGCCAATCCGATTCCTGACAGTATTCTTGAAATCGGTAAGAGTTCTACGAGGTTCAGAGAATAGGCAAAACCAAATACCGGTGTAGAAAATAGTAAAATAGTTGCAGCTGTGAGAAGAGTTTTCCTTGGTCCGATTCTGGAAAGGAGGTGGACCGAAAGATAAGATCCAACCATGGCTCCAATGAAAAGACATCCTGCCAATGAAGACCATAAAATGGAAAGTTGAGAAGATGAGAGAATGAAGGAATAACGTCTGAAATCAGAGAAATGTTGTTTTGTGTTCAATAAAATATTTTTGAAAATACTTTATCTTCTCTAATAGATGCCCAATCAAACTTTGAGTTCA</canonical>
            <polymorphic>AGCTACATAAACTGTTTGCCACGGCAGATCCTTCCGGAGAGAAACCAACATTTTGGAGTAGAAATGTTCCGAAAAATGATATTGCCGCAATGCCACTGAAAATAAAATTTCGAGAAGTAAAAACCTAATTGTAAGAAAATATGTTACCTAAAAGCCACAGAGAAGTTAATAGCGACAGAAAGGGATAATGCACGAGAAGCAGCTTTATCTTTGAGAACTTCTCGAAGAGTCTTGTTTTCCGTTGCAGTTTCACTTCTCAGATCTTCCAGAACCATCTTCACTTGACACGATTTTCCATAATACGTATATAGCGATCGTTCAGCTTCGATACTTTTTCCAATCGATAACAGATATTTGGGACTGTCGTGGAACATCGAAATATTCAAGATGACATGAGCAATGCAGGGGATTGTTTCAATAAAGAACATATATTTCCATAAGGATACGGTACCTAACAAATAGGGAGTTCCAAGTGAGGCGGCTAGCACGAACGCAATATWTCCAATGAGACCACTCAAAGAATTCGTCATACCGCGGTATTTGGCTAGAAATACTTAAAAGTTAAGGTTCTAGATATAATGGTTGAATTTCTGTAAATAAATGATTACCTGGACTAATTTCTGTGATAAAAACCCCTTGGGCCGATATCCCAATTGCCAATCCGATTCCTGACAGTATTCTTGAAATCGGTAAGAGTTCTACGAGGTTCAGAGAATAGGCAAAACCAAATACCGGTGTAGAAAATAGTAAAATAGTTGCAGCTGTGAGAAGAGTTTTCCTTGGTCCGATTCTGGAAAGGAGGTGGACCGAAAGATAAGATCCAACCATGGCTCCAATGAAAAGACATCCTGCCAATGAAGACCATAAAATGGAAAGTTGAGAAGATGAGAGAATGAAGGAATAACGTCTGAAATCAGAGAAATGTTGTTTTGTGTTCAATAAAATATTTTTGAAAATACTTTATCTTCTCTAATAGATGCCCAATCAAACTTTGAGTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>448 380 117 55</canonical_bands>
                <polymorphic_bands>565 380 55</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCGATAACAGATATTTGGGACT</pcr_primer_p1>
		<pcr_primer_p2>AATTCAACCATTATATCTAGAACCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCGATAACAGATATTTGGGACTGTCGTGGAACATCGAAATATTCAAGATGACATGAGCAATGCAGGGGATTGTTTCAATAAAGAACATATATTTCCATAAGGATACGGTACCTAACAAATAGGGAGTTCCAAGTGAGGCGGCTAGCACGAACGCAATATTTCCAATGAGACCACTCAAAGAATTCGTCATACCGCGGTATTTGGCTAGAAATACTTAAAAGTTAAGGTTCTAGATATAATGGTTGAATT</canonical_amplicon>
		<polymorphic_amplicon>ATCGATAACAGATATTTGGGACTGTCGTGGAACATCGAAATATTCAAGATGACATGAGCAATGCAGGGGATTGTTTCAATAAAGAACATATATTTCCATAAGGATACGGTACCTAACAAATAGGGAGTTCCAAGTGAGGCGGCTAGCACGAACGCAATATWTCCAATGAGACCACTCAAAGAATTCGTCATACCGCGGTATTTGGCTAGAAATACTTAAAAGTTAAGGTTCTAGATATAATGGTTGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39359</snp_id>
        <super_contig>c013501214.Contig1</super_contig>
        <contig_pos>963687</contig_pos>
        <strand></strand>
        <context>caggaactga[T/G]ataaattggg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>ATAAACAATTTATCAGTTGACCATCTTTTTGTGTTTCTAACAGGAACTGA</left_flank>
        <right_flank>ATAAATTGGGTCAAAATTAGAAGTCAGGGAACATTCTTTTACAGGTTTTA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCTCCATCAAAGGAGGATAGATTGAGTATCCCCTGGAAGTTTTTTTGAATTTTTTCACATTTTTTCTTGAAAGCACTCACAAAATAGTTTCTGGAAAAAATACACCAAGCATAACAACCAATAGAACATACAGATTATTTGAAGCACGAGAAAGACATATCAAATTGAATGCATTATTCTTCTTTTCGGAGAAAAATGCATATAAAATGGCAAAGTTGAGAACAGCTTCAATCAATGATGTCTGAAAACGACAGAAATTTAAAGATACTCTGCCGCGACAGTGTTTGGCCAAGATGTGTAATCATATTCTTCTGATCGGGGATCCATTGGCACTGTAACGCAGCAACACCTGCAATAAAAGGACACATTAGGTTTGAGCTAATTTATCTCGGTTCCTGTGAAAGATGTCAAAAATATTTCAACTGATAAAATGTTTTTGATATTATGATAAACAATTTATCAGTTGACCATCTTTTTGTGTTTCTAACAGGAACTGATATAAATTGGGTCAAAATTAGAAGTCAGGGAACATTCTTTTACAGGTTTTACGGTTTTCGTATCTGCTTTGACCCATTTCTTTTACAGGTTTTACGGTTTTCGTATCTGACTTTGACCAACTTTTAAGCAAACCATACATAATCAAAGTACAATTCCGTGTATGGTACAGATGTTCAAAGTGTCAAGTAGAGATTTTCGGCTTCTGGGCTTTTTCTACTACCGTTACACAATTTCAAATTGTCAATGTTTGGTTTTTTATGTTTTTATGATTTTTCAGATGCTTTTCTAGAATATATACTTATTTATTACTCAAGAGATGTTTCTTTCAGCTCAAAAACCGATTTTATAAGTTGAGATGCAAGCAAAAACAAGTAGGAGGGTTAATTTTATTTATCGTGTGAGAGTCGGTTGCTGGATTTTGATACTTTTTTCAATAGGTATCAATACTACAGTTCAGTCGAATATAAAACATGATTTCCGCTTGTTGAATACTCATTCTC</canonical>
            <polymorphic>ACTCTCCATCAAAGGAGGATAGATTGAGTATCCCCTGGAAGTTTTTTTGAATTTTTTCACATTTTTTCTTGAAAGCACTCACAAAATAGTTTCTGGAAAAAATACACCAAGCATAACAACCAATAGAACATACAGATTATTTGAAGCACGAGAAAGACATATCAAATTGAATGCATTATTCTTCTTTTCGGAGAAAAATGCATATAAAATGGCAAAGTTGAGAACAGCTTCAATCAATGATGTCTGAAAACGACAGAAATTTAAAGATACTCTGCCGCGACAGTGTTTGGCCAAGATGTGTAATCATATTCTTCTGATCGGGGATCCATTGGCACTGTAACGCAGCAACACCTGCAATAAAAGGACACATTAGGTTTGAGCTAATTTATCTCGGTTCCTGTGAAAGATGTCAAAAATATTTCAACTGATAAAATGTTTTTGATATTATGATAAACAATTTATCAGTTGACCATCTTTTTGTGTTTCTAACAGGAACTGAKATAAATTGGGTCAAAATTAGAAGTCAGGGAACATTCTTTTACAGGTTTTACGGTTTTCGTATCTGCTTTGACCCATTTCTTTTACAGGTTTTACGGTTTTCGTATCTGACTTTGACCAACTTTTAAGCAAACCATACATAATCAAAGTACAATTCCGTGTATGGTACAGATGTTCAAAGTGTCAAGTAGAGATTTTCGGCTTCTGGGCTTTTTCTACTACCGTTACACAATTTCAAATTGTCAATGTTTGGTTTTTTATGTTTTTATGATTTTTCAGATGCTTTTCTAGAATATATACTTATTTATTACTCAAGAGATGTTTCTTTCAGCTCAAAAACCGATTTTATAAGTTGAGATGCAAGCAAAAACAAGTAGGAGGGTTAATTTTATTTATCGTGTGAGAGTCGGTTGCTGGATTTTGATACTTTTTTCAATAGGTATCAATACTACAGTTCAGTCGAATATAAAACATGATTTCCGCTTGTTGAATACTCATTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCCAAGATGTGTAATCATATTCT</pcr_primer_p1>
		<pcr_primer_p2>GAAATGGGTCAAAGCAGATAC</pcr_primer_p2>
		<pcr_amplicon_size>290</pcr_amplicon_size>
		<canonical_amplicon>GCCAAGATGTGTAATCATATTCTTCTGATCGGGGATCCATTGGCACTGTAACGCAGCAACACCTGCAATAAAAGGACACATTAGGTTTGAGCTAATTTATCTCGGTTCCTGTGAAAGATGTCAAAAATATTTCAACTGATAAAATGTTTTTGATATTATGATAAACAATTTATCAGTTGACCATCTTTTTGTGTTTCTAACAGGAACTGATATAAATTGGGTCAAAATTAGAAGTCAGGGAACATTCTTTTACAGGTTTTACGGTTTTCGTATCTGCTTTGACCCATTTC</canonical_amplicon>
		<polymorphic_amplicon>GCCAAGATGTGTAATCATATTCTTCTGATCGGGGATCCATTGGCACTGTAACGCAGCAACACCTGCAATAAAAGGACACATTAGGTTTGAGCTAATTTATCTCGGTTCCTGTGAAAGATGTCAAAAATATTTCAACTGATAAAATGTTTTTGATATTATGATAAACAATTTATCAGTTGACCATCTTTTTGTGTTTCTAACAGGAACTGAKATAAATTGGGTCAAAATTAGAAGTCAGGGAACATTCTTTTACAGGTTTTACGGTTTTCGTATCTGCTTTGACCCATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39360</snp_id>
        <super_contig>c013501470.Contig1</super_contig>
        <contig_pos>811</contig_pos>
        <strand></strand>
        <context>TTTTCCAAAA[G/A]AGATGGGACW</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGCGAATTTTACGTTTTTTTTTTTGGTTTTTGGCTGAAAATTTTCCAAAA</left_flank>
        <right_flank>AGATGGGACTGCCGGGGATTTTTACTGTAAAATCGATAATTTAGCTTAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATGAGTTCTCAACGAAGATCCAGTGCTCGCAACAAGTCGAACGCCGTCCGTTTCGATCCATCGCCAGCAGTGGTGATGTCACCGGGTTTGGCCGATTTTTACCTAAAAATAACTGAAAAAATCGATTTTTCAGCTAAAAAACCGGCAAAAGGAGCCGCAATCGTCGAGGAAGAGGCGAAACCGACAAGTATGGATTTTAATAAATTATTTTTTTGAAAATCTCATTTTTCAGACGAATCGGCTCCTAAAACTCGCGCCAAACTTCCAAAAGGCACTCCGATTCCTAGTAACAACCCCCAAAATTCGAAAATTTCCTCTAAAAATCTATTTTTAAGCCAGAAATCCGGTTCGAACCGTCCGTAAAACGATGCAAGTGTTTCCAGACGACTCACCGATTGCGGAAGCTGAATCATCGACGAAAAGTACATTAATTCTTGTTTCTTTTTTTGCGAATTTTACGTTTTTTTTTTTGGTTTTTGGCTGAAAATTTTCCAAAAGAGATGGGACTGCCGGGGATTTTTACTGTAAAATCGATAATTTAGCTTAAAGGTGGGGGGACATGAAAAAAAAATAATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACATCTGTACGCAGAGTGGCGTTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAAAATCGATATTTTCAGCTCAAACTACCCCAAAAAAGCCAGATTTTGAGTCAGAAAATTGCCGATTTTTTTGGGAAAAATTTGGGCAATTTTGACGGATAAAAACTGGAAAAATCGAAAATTTGGCCTAAAAATCAATATTTTCAGCTCAAATTACCCTGAAAAGGCAAATTTTGAGCGAG</canonical>
            <polymorphic>AAATGAGTTCTCAACGAAGATCCAGTGCTCGCAACAAGTCGAACGCCGTCCGTTTCGATCCATCGCCAGCAGTGGTGATGTCACCGGGTTTGGCCGATTTTTACCTAAAAATAACTGAAAAAATCGATTTTTCAGCTAAAAAACCGGCAAAAGGAGCCGCAATCGTCGAGGAAGAGGCGAAACCGACAAGTATGGATTTTAATAAATTATTTTTTTGAAAATCTCATTTTTCAGACGAATCGGCTCCTAAAACTCGCGCCAAACTTCCAAAAGGCACTCCGATTCCTAGTAACAACCCCCAAAATTCGAAAATTTCCTCTAAAAATCTATTTTTAAGCCAGAAATCCGGTTCGAACCGTCCGTAAAACGATGCAAGTGTTTCCAGACGACTCACCGATTGCGGAAGCTGAATCATCGACGAAAAGTACATTAATTCTTGTTTCTTTTTTTGCGAATTTTACGTTTTTTTTTTTGGTTTTTGGCTGAAAATTTTCCAAAARAGATGGGACTGCCGGGGATTTTTACTGTAAAATCGATAATTTAGCTTAAAGGTGGGGGGACATGAAAAAAAAATAATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACATCTGTACGCAGAGTGGCGTTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAAAATCGATATTTTCAGCTCAAACTACCCCAAAAAAGCCAGATTTTGAGTCAGAAAATTGCCGATTTTTTTGGGAAAAATTTGGGCAATTTTGACGGATAAAAACTGGAAAAATCGAAAATTTGGCCTAAAAATCAATATTTTCAGCTCAAATTACCCTGAAAAGGCAAATTTTGAGCGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGAAAATTTCCTCTAAAAATCT</pcr_primer_p1>
		<pcr_primer_p2>CCCCACCTTTAAGCTAAATTAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCGAAAATTTCCTCTAAAAATCTATTTTTAAGCCAGAAATCCGGTTCGAACCGTCCGTAAAACGATGCAAGTGTTTCCAGACGACTCACCGATTGCGGAAGCTGAATCATCGACGAAAAGTACATTAATTCTTGTTTCTTTTTTTGCGAATTTTACGTTTTTTTTTTTGGTTTTTGGCTGAAAATTTTCCAAAAGAGATGGGACTGCCGGGGATTTTTACTGTAAAATCGATAATTTAGCTTAAAGGTGGGG</canonical_amplicon>
		<polymorphic_amplicon>TCGAAAATTTCCTCTAAAAATCTATTTTTAAGCCAGAAATCCGGTTCGAACCGTCCGTAAAACGATGCAAGTGTTTCCAGACGACTCACCGATTGCGGAAGCTGAATCATCGACGAAAAGTACATTAATTCTTGTTTCTTTTTTTGCGAATTTTACGTTTTTTTTTTTGGTTTTTGGCTGAAAATTTTCCAAAARAGATGGGACTGCCGGGGATTTTTACTGTAAAATCGATAATTTAGCTTAAAGGTGGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39361</snp_id>
        <super_contig>c013501470.Contig1</super_contig>
        <contig_pos>821</contig_pos>
        <strand></strand>
        <context>RAGATGGGAC[T/A]GCCGGGGATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>ACGTTTTTTTTTTTGGTTTTTGGCTGAAAATTTTCCAAAAGAGATGGGAC</left_flank>
        <right_flank>GCCGGGGATTTTTACTGTAAAATCGATAATTTAGCTTAAAGGTGGGGGGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAACGAAGATCCAGTGCTCGCAACAAGTCGAACGCCGTCCGTTTCGATCCATCGCCAGCAGTGGTGATGTCACCGGGTTTGGCCGATTTTTACCTAAAAATAACTGAAAAAATCGATTTTTCAGCTAAAAAACCGGCAAAAGGAGCCGCAATCGTCGAGGAAGAGGCGAAACCGACAAGTATGGATTTTAATAAATTATTTTTTTGAAAATCTCATTTTTCAGACGAATCGGCTCCTAAAACTCGCGCCAAACTTCCAAAAGGCACTCCGATTCCTAGTAACAACCCCCAAAATTCGAAAATTTCCTCTAAAAATCTATTTTTAAGCCAGAAATCCGGTTCGAACCGTCCGTAAAACGATGCAAGTGTTTCCAGACGACTCACCGATTGCGGAAGCTGAATCATCGACGAAAAGTACATTAATTCTTGTTTCTTTTTTTGCGAATTTTACGTTTTTTTTTTTGGTTTTTGGCTGAAAATTTTCCAAAAGAGATGGGACTGCCGGGGATTTTTACTGTAAAATCGATAATTTAGCTTAAAGGTGGGGGGACATGAAAAAAAAATAATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACATCTGTACGCAGAGTGGCGTTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAAAATCGATATTTTCAGCTCAAACTACCCCAAAAAAGCCAGATTTTGAGTCAGAAAATTGCCGATTTTTTTGGGAAAAATTTGGGCAATTTTGACGGATAAAAACTGGAAAAATCGAAAATTTGGCCTAAAAATCAATATTTTCAGCTCAAATTACCCTGAAAAGGCAAATTTTGAGCGAGAAATTTCAGA</canonical>
            <polymorphic>TCAACGAAGATCCAGTGCTCGCAACAAGTCGAACGCCGTCCGTTTCGATCCATCGCCAGCAGTGGTGATGTCACCGGGTTTGGCCGATTTTTACCTAAAAATAACTGAAAAAATCGATTTTTCAGCTAAAAAACCGGCAAAAGGAGCCGCAATCGTCGAGGAAGAGGCGAAACCGACAAGTATGGATTTTAATAAATTATTTTTTTGAAAATCTCATTTTTCAGACGAATCGGCTCCTAAAACTCGCGCCAAACTTCCAAAAGGCACTCCGATTCCTAGTAACAACCCCCAAAATTCGAAAATTTCCTCTAAAAATCTATTTTTAAGCCAGAAATCCGGTTCGAACCGTCCGTAAAACGATGCAAGTGTTTCCAGACGACTCACCGATTGCGGAAGCTGAATCATCGACGAAAAGTACATTAATTCTTGTTTCTTTTTTTGCGAATTTTACGTTTTTTTTTTTGGTTTTTGGCTGAAAATTTTCCAAAAGAGATGGGACWGCCGGGGATTTTTACTGTAAAATCGATAATTTAGCTTAAAGGTGGGGGGACATGAAAAAAAAATAATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGAGGACGACATCTGTACGCAGAGTGGCGTTAAGCGTTGTACACCGTCACGGTAGAATGCATACTCTGGCCCCAAAAATCCCCCGTAAAATCTCCTGTCCCCCCACCTTTAAAAATCGATATTTTCAGCTCAAACTACCCCAAAAAAGCCAGATTTTGAGTCAGAAAATTGCCGATTTTTTTGGGAAAAATTTGGGCAATTTTGACGGATAAAAACTGGAAAAATCGAAAATTTGGCCTAAAAATCAATATTTTCAGCTCAAATTACCCTGAAAAGGCAAATTTTGAGCGAGAAATTTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGCGAATTTTACGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TCGCCTTTATGTATCCAATC</pcr_primer_p2>
		<pcr_amplicon_size>264</pcr_amplicon_size>
		<canonical_amplicon>TTTGCGAATTTTACGTTTTTTTTTTTGGTTTTTGGCTGAAAATTTTCCAAAAGAGATGGGACTGCCGGGGATTTTTACTGTAAAATCGATAATTTAGCTTAAAGGTGGGGGGACATGAAAAAAAAATAATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGA</canonical_amplicon>
		<polymorphic_amplicon>TTTGCGAATTTTACGTTTTTTTTTTTGGTTTTTGGCTGAAAATTTTCCAAAAGAGATGGGACWGCCGGGGATTTTTACTGTAAAATCGATAATTTAGCTTAAAGGTGGGGGGACATGAAAAAAAAATAATGTTCTCGAAATTTCGTTCAAATATGCCCCTCGAGGAGTTGAACGTGTGGGCGAGGATTGAGGGTGCGGCGCCGCTACCGACTGAGCTACACGGGCAAAGAGAAAGCGGTCGCCCGATTGGATACATAAAGGCGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39362</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>15525</contig_pos>
        <strand>+</strand>
        <context>TGCTCTCCTC[G/T]CTCCTCCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TACCTCTCCAACTTGCTCAATATCCTTTTTCAGAATCGCTTGCTCTCCTC</left_flank>
        <right_flank>CTCCTCCAAATCATCCAAGGGAACCGCCATTTCTTGTTCTCCGTTTCCAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAGCGAGCAATATCCTTTCGTCGTTTGTCTGGAATTGACTAAATTATATATTCATATATATGGCAGAAGGTGTAAACAAGACAAAAAACGTACAAACAGCCGACGCGACACCTTCAACAGAATCAATCCGCTTCTCGGCTTTCGGTTTTGCTCCTTCGAATCGCGAGATTCGCATGGATAACTGCCCATTATCGAATCTGAAAAATATACGATTTGTTTTTTTTAGGTTTTGAAAGAAAATATAAAAATAGAGACTTACTGGAAATCATCAAAATAGAGGTTGTTCGGAATGGCGATAGTATTCTGAAGGAACTCAATCAATGGCATCAATTGATCTTCATTCTTCAGGTGGACCTTCAAATAGACTCGATTGGCATCAACACGTGTCACCACTTGATCTTTTCTTCCTTTGACAATCTTGTGTTCCGTATTGTCCAATCCTTGATTTACCTCTCCAACTTGCTCAATATCCTTTTTCAGAATCGCTTGCTCTCCTCTCTCCTCCAAATCATCCAAGGGAACCGCCATTTCTTGTTCTCCGTTTCCAGGCAACAGCTGGTTCTCCTCATTCTCAACATTCTTCTTCAAATCCACAAGTCTTTCAATCAAACTGTTCAGTTGACCATCCGACAGTTCCGAGAAATCCGGATTCTCATTGTTCACAACAGCCTGGACGTATTGATCCAGAATCTCGTCATCCACGTCTTCATTCTCAGCGTTCAGGGCTTCTGAAATGTTGTTTAGTGCATACTTGAAAAATGGTCCAAAACAAGCTCAAAACGGGCCCTGGCGGACAAGGATGTTCGGAATGCCCTTTTCGGATTTTTCAAAATTTCGGAATTTCGGAAATTCCGAACGCAGTTCAGAACATCCCTAGTTTCTTTTAGGATCAATTTTTTTGACCAACTAAGTTAGATATGATAGAACTCTACGAGCACTACAAAATGAAACTATTTGGGACACTGTATCGTGTCTGTGAACAAAGTTACAGACCAAAC</canonical>
            <polymorphic>ACAAGCGAGCAATATCCTTTCGTCGTTTGTCTGGAATTGACTAAATTATATATTCATATATATGGCAGAAGGTGTAAACAAGACAAAAAACGTACAAACAGCCGACGCGACACCTTCAACAGAATCAATCCGCTTCTCGGCTTTCGGTTTTGCTCCTTCGAATCGCGAGATTCGCATGGATAACTGCCCATTATCGAATCTGAAAAATATACGATTTGTTTTTTTTAGGTTTTGAAAGAAAATATAAAAATAGAGACTTACTGGAAATCATCAAAATAGAGGTTGTTCGGAATGGCGATAGTATTCTGAAGGAACTCAATCAATGGCATCAATTGATCTTCATTCTTCAGGTGGACCTTCAAATAGACTCGATTGGCATCAACACGTGTCACCACTTGATCTTTTCTTCCTTTGACAATCTTGTGTTCCGTATTGTCCAATCCTTGATTTACCTCTCCAACTTGCTCAATATCCTTTTTCAGAATCGCTTGCTCTCCTCKCTCCTCCAAATCATCCAAGGGAACCGCCATTTCTTGTTCTCCGTTTCCAGGCAACAGCTGGTTCTCCTCATTCTCAACATTCTTCTTCAAATCCACAAGTCTTTCAATCAAACTGTTCAGTTGACCATCCGACAGTTCCGAGAAATCCGGATTCTCATTGTTCACAACAGCCTGGACGTATTGATCCAGAATCTCGTCATCCACGTCTTCATTCTCAGCGTTCAGGGCTTCTGAAATGTTGTTTAGTGCATACTTGAAAAATGGTCCAAAACAAGCTCAAAACGGGCCCTGGCGGACAAGGATGTTCGGAATGCCCTTTTCGGATTTTTCAAAATTTCGGAATTTCGGAAATTCCGAACGCAGTTCAGAACATCCCTAGTTTCTTTTAGGATCAATTTTTTTGACCAACTAAGTTAGATATGATAGAACTCTACGAGCACTACAAAATGAAACTATTTGGGACACTGTATCGTGTCTGTGAACAAAGTTACAGACCAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGATCTTCATTCTTCAGGTG</pcr_primer_p1>
		<pcr_primer_p2>GAATGTTGAGAATGAGGAGAAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATTGATCTTCATTCTTCAGGTGGACCTTCAAATAGACTCGATTGGCATCAACACGTGTCACCACTTGATCTTTTCTTCCTTTGACAATCTTGTGTTCCGTATTGTCCAATCCTTGATTTACCTCTCCAACTTGCTCAATATCCTTTTTCAGAATCGCTTGCTCTCCTCTCTCCTCCAAATCATCCAAGGGAACCGCCATTTCTTGTTCTCCGTTTCCAGGCAACAGCTGGTTCTCCTCATTCTCAACATTC</canonical_amplicon>
		<polymorphic_amplicon>ATTGATCTTCATTCTTCAGGTGGACCTTCAAATAGACTCGATTGGCATCAACACGTGTCACCACTTGATCTTTTCTTCCTTTGACAATCTTGTGTTCCGTATTGTCCAATCCTTGATTTACCTCTCCAACTTGCTCAATATCCTTTTTCAGAATCGCTTGCTCTCCTCKCTCCTCCAAATCATCCAAGGGAACCGCCATTTCTTGTTCTCCGTTTCCAGGCAACAGCTGGTTCTCCTCATTCTCAACATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39363</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>15629</contig_pos>
        <strand>+</strand>
        <context>CACAAGTCTT[C/T]CAATCAAACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACAGCTGGTTCTCCTCATTCTCAACATTCTTCTTCAAATCCACAAGTCTT</left_flank>
        <right_flank>CAATCAAACTGTTCAGTTGACCATCCGACAGTTCCGAGAAATCCGGATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGCGACACCTTCAACAGAATCAATCCGCTTCTCGGCTTTCGGTTTTGCTCCTTCGAATCGCGAGATTCGCATGGATAACTGCCCATTATCGAATCTGAAAAATATACGATTTGTTTTTTTTAGGTTTTGAAAGAAAATATAAAAATAGAGACTTACTGGAAATCATCAAAATAGAGGTTGTTCGGAATGGCGATAGTATTCTGAAGGAACTCAATCAATGGCATCAATTGATCTTCATTCTTCAGGTGGACCTTCAAATAGACTCGATTGGCATCAACACGTGTCACCACTTGATCTTTTCTTCCTTTGACAATCTTGTGTTCCGTATTGTCCAATCCTTGATTTACCTCTCCAACTTGCTCAATATCCTTTTTCAGAATCGCTTGCTCTCCTCTCTCCTCCAAATCATCCAAGGGAACCGCCATTTCTTGTTCTCCGTTTCCAGGCAACAGCTGGTTCTCCTCATTCTCAACATTCTTCTTCAAATCCACAAGTCTTTCAATCAAACTGTTCAGTTGACCATCCGACAGTTCCGAGAAATCCGGATTCTCATTGTTCACAACAGCCTGGACGTATTGATCCAGAATCTCGTCATCCACGTCTTCATTCTCAGCGTTCAGGGCTTCTGAAATGTTGTTTAGTGCATACTTGAAAAATGGTCCAAAACAAGCTCAAAACGGGCCCTGGCGGACAAGGATGTTCGGAATGCCCTTTTCGGATTTTTCAAAATTTCGGAATTTCGGAAATTCCGAACGCAGTTCAGAACATCCCTAGTTTCTTTTAGGATCAATTTTTTTGACCAACTAAGTTAGATATGATAGAACTCTACGAGCACTACAAAATGAAACTATTTGGGACACTGTATCGTGTCTGTGAACAAAGTTACAGACCAAACGGCCAGGGGCCCGTCTGTCCCCGATTTGCAGCTTTAGGCCTTGTAACGTTGTCCATAGACAAGATACAGTTTTACAAACAGTTTTATTTTGTAGTGCTTGTTGA</canonical>
            <polymorphic>ACGCGACACCTTCAACAGAATCAATCCGCTTCTCGGCTTTCGGTTTTGCTCCTTCGAATCGCGAGATTCGCATGGATAACTGCCCATTATCGAATCTGAAAAATATACGATTTGTTTTTTTTAGGTTTTGAAAGAAAATATAAAAATAGAGACTTACTGGAAATCATCAAAATAGAGGTTGTTCGGAATGGCGATAGTATTCTGAAGGAACTCAATCAATGGCATCAATTGATCTTCATTCTTCAGGTGGACCTTCAAATAGACTCGATTGGCATCAACACGTGTCACCACTTGATCTTTTCTTCCTTTGACAATCTTGTGTTCCGTATTGTCCAATCCTTGATTTACCTCTCCAACTTGCTCAATATCCTTTTTCAGAATCGCTTGCTCTCCTCTCTCCTCCAAATCATCCAAGGGAACCGCCATTTCTTGTTCTCCGTTTCCAGGCAACAGCTGGTTCTCCTCATTCTCAACATTCTTCTTCAAATCCACAAGTCTTYCAATCAAACTGTTCAGTTGACCATCCGACAGTTCCGAGAAATCCGGATTCTCATTGTTCACAACAGCCTGGACGTATTGATCCAGAATCTCGTCATCCACGTCTTCATTCTCAGCGTTCAGGGCTTCTGAAATGTTGTTTAGTGCATACTTGAAAAATGGTCCAAAACAAGCTCAAAACGGGCCCTGGCGGACAAGGATGTTCGGAATGCCCTTTTCGGATTTTTCAAAATTTCGGAATTTCGGAAATTCCGAACGCAGTTCAGAACATCCCTAGTTTCTTTTAGGATCAATTTTTTTGACCAACTAAGTTAGATATGATAGAACTCTACGAGCACTACAAAATGAAACTATTTGGGACACTGTATCGTGTCTGTGAACAAAGTTACAGACCAAACGGCCAGGGGCCCGTCTGTCCCCGATTTGCAGCTTTAGGCCTTGTAACGTTGTCCATAGACAAGATACAGTTTTACAAACAGTTTTATTTTGTAGTGCTTGTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATTGTCCAATCCTTGATTTAC</pcr_primer_p1>
		<pcr_primer_p2>GCTGTTGTGAACAATGAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GTATTGTCCAATCCTTGATTTACCTCTCCAACTTGCTCAATATCCTTTTTCAGAATCGCTTGCTCTCCTCTCTCCTCCAAATCATCCAAGGGAACCGCCATTTCTTGTTCTCCGTTTCCAGGCAACAGCTGGTTCTCCTCATTCTCAACATTCTTCTTCAAATCCACAAGTCTTTCAATCAAACTGTTCAGTTGACCATCCGACAGTTCCGAGAAATCCGGATTCTCATTGTTCACAACAGC</canonical_amplicon>
		<polymorphic_amplicon>GTATTGTCCAATCCTTGATTTACCTCTCCAACTTGCTCAATATCCTTTTTCAGAATCGCTTGCTCTCCTCTCTCCTCCAAATCATCCAAGGGAACCGCCATTTCTTGTTCTCCGTTTCCAGGCAACAGCTGGTTCTCCTCATTCTCAACATTCTTCTTCAAATCCACAAGTCTTYCAATCAAACTGTTCAGTTGACCATCCGACAGTTCCGAGAAATCCGGATTCTCATTGTTCACAACAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39364</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>15645</contig_pos>
        <strand>+</strand>
        <context>AAACTGTTCA[A/G]TTGACCATCC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTCTCAACATTCTTCTTCAAATCCACAAGTCTTTCAATCAAACTGTTCA</left_flank>
        <right_flank>TTGACCATCCGACAGTTCCGAGAAATCCGGATTCTCATTGTTCACAACAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAATCAATCCGCTTCTCGGCTTTCGGTTTTGCTCCTTCGAATCGCGAGATTCGCATGGATAACTGCCCATTATCGAATCTGAAAAATATACGATTTGTTTTTTTTAGGTTTTGAAAGAAAATATAAAAATAGAGACTTACTGGAAATCATCAAAATAGAGGTTGTTCGGAATGGCGATAGTATTCTGAAGGAACTCAATCAATGGCATCAATTGATCTTCATTCTTCAGGTGGACCTTCAAATAGACTCGATTGGCATCAACACGTGTCACCACTTGATCTTTTCTTCCTTTGACAATCTTGTGTTCCGTATTGTCCAATCCTTGATTTACCTCTCCAACTTGCTCAATATCCTTTTTCAGAATCGCTTGCTCTCCTCTCTCCTCCAAATCATCCAAGGGAACCGCCATTTCTTGTTCTCCGTTTCCAGGCAACAGCTGGTTCTCCTCATTCTCAACATTCTTCTTCAAATCCACAAGTCTTTCAATCAAACTGTTCAGTTGACCATCCGACAGTTCCGAGAAATCCGGATTCTCATTGTTCACAACAGCCTGGACGTATTGATCCAGAATCTCGTCATCCACGTCTTCATTCTCAGCGTTCAGGGCTTCTGAAATGTTGTTTAGTGCATACTTGAAAAATGGTCCAAAACAAGCTCAAAACGGGCCCTGGCGGACAAGGATGTTCGGAATGCCCTTTTCGGATTTTTCAAAATTTCGGAATTTCGGAAATTCCGAACGCAGTTCAGAACATCCCTAGTTTCTTTTAGGATCAATTTTTTTGACCAACTAAGTTAGATATGATAGAACTCTACGAGCACTACAAAATGAAACTATTTGGGACACTGTATCGTGTCTGTGAACAAAGTTACAGACCAAACGGCCAGGGGCCCGTCTGTCCCCGATTTGCAGCTTTAGGCCTTGTAACGTTGTCCATAGACAAGATACAGTTTTACAAACAGTTTTATTTTGTAGTGCTTGTTGAGTTCTATCATGCACCC</canonical>
            <polymorphic>AGAATCAATCCGCTTCTCGGCTTTCGGTTTTGCTCCTTCGAATCGCGAGATTCGCATGGATAACTGCCCATTATCGAATCTGAAAAATATACGATTTGTTTTTTTTAGGTTTTGAAAGAAAATATAAAAATAGAGACTTACTGGAAATCATCAAAATAGAGGTTGTTCGGAATGGCGATAGTATTCTGAAGGAACTCAATCAATGGCATCAATTGATCTTCATTCTTCAGGTGGACCTTCAAATAGACTCGATTGGCATCAACACGTGTCACCACTTGATCTTTTCTTCCTTTGACAATCTTGTGTTCCGTATTGTCCAATCCTTGATTTACCTCTCCAACTTGCTCAATATCCTTTTTCAGAATCGCTTGCTCTCCTCTCTCCTCCAAATCATCCAAGGGAACCGCCATTTCTTGTTCTCCGTTTCCAGGCAACAGCTGGTTCTCCTCATTCTCAACATTCTTCTTCAAATCCACAAGTCTTTCAATCAAACTGTTCARTTGACCATCCGACAGTTCCGAGAAATCCGGATTCTCATTGTTCACAACAGCCTGGACGTATTGATCCAGAATCTCGTCATCCACGTCTTCATTCTCAGCGTTCAGGGCTTCTGAAATGTTGTTTAGTGCATACTTGAAAAATGGTCCAAAACAAGCTCAAAACGGGCCCTGGCGGACAAGGATGTTCGGAATGCCCTTTTCGGATTTTTCAAAATTTCGGAATTTCGGAAATTCCGAACGCAGTTCAGAACATCCCTAGTTTCTTTTAGGATCAATTTTTTTGACCAACTAAGTTAGATATGATAGAACTCTACGAGCACTACAAAATGAAACTATTTGGGACACTGTATCGTGTCTGTGAACAAAGTTACAGACCAAACGGCCAGGGGCCCGTCTGTCCCCGATTTGCAGCTTTAGGCCTTGTAACGTTGTCCATAGACAAGATACAGTTTTACAAACAGTTTTATTTTGTAGTGCTTGTTGAGTTCTATCATGCACCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>318 269 233 140 40</canonical_bands>
                <polymorphic_bands>318 309 233 140</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTCAATATCCTTTTTCAGAATC</pcr_primer_p1>
		<pcr_primer_p2>AGAATGAAGACGTGGATGAC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>GCTCAATATCCTTTTTCAGAATCGCTTGCTCTCCTCTCTCCTCCAAATCATCCAAGGGAACCGCCATTTCTTGTTCTCCGTTTCCAGGCAACAGCTGGTTCTCCTCATTCTCAACATTCTTCTTCAAATCCACAAGTCTTTCAATCAAACTGTTCAGTTGACCATCCGACAGTTCCGAGAAATCCGGATTCTCATTGTTCACAACAGCCTGGACGTATTGATCCAGAATCTCGTCATCCACGTCTTCATTCT</canonical_amplicon>
		<polymorphic_amplicon>GCTCAATATCCTTTTTCAGAATCGCTTGCTCTCCTCTCTCCTCCAAATCATCCAAGGGAACCGCCATTTCTTGTTCTCCGTTTCCAGGCAACAGCTGGTTCTCCTCATTCTCAACATTCTTCTTCAAATCCACAAGTCTTTCAATCAAACTGTTCARTTGACCATCCGACAGTTCCGAGAAATCCGGATTCTCATTGTTCACAACAGCCTGGACGTATTGATCCAGAATCTCGTCATCCACGTCTTCATTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39365</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>15744</contig_pos>
        <strand>+</strand>
        <context>TCATTCTCAG[A/C]GTTCAGGGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGCCTGGACGTATTGATCCAGAATCTCGTCATCCACGTCTTCATTCTCAG</left_flank>
        <right_flank>GTTCAGGGCTTCTGAAATGTTGTTTAGTGCATACTTGAAAAATGGTCCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTTAGGTTTTGAAAGAAAATATAAAAATAGAGACTTACTGGAAATCATCAAAATAGAGGTTGTTCGGAATGGCGATAGTATTCTGAAGGAACTCAATCAATGGCATCAATTGATCTTCATTCTTCAGGTGGACCTTCAAATAGACTCGATTGGCATCAACACGTGTCACCACTTGATCTTTTCTTCCTTTGACAATCTTGTGTTCCGTATTGTCCAATCCTTGATTTACCTCTCCAACTTGCTCAATATCCTTTTTCAGAATCGCTTGCTCTCCTCTCTCCTCCAAATCATCCAAGGGAACCGCCATTTCTTGTTCTCCGTTTCCAGGCAACAGCTGGTTCTCCTCATTCTCAACATTCTTCTTCAAATCCACAAGTCTTTCAATCAAACTGTTCAGTTGACCATCCGACAGTTCCGAGAAATCCGGATTCTCATTGTTCACAACAGCCTGGACGTATTGATCCAGAATCTCGTCATCCACGTCTTCATTCTCAGCGTTCAGGGCTTCTGAAATGTTGTTTAGTGCATACTTGAAAAATGGTCCAAAACAAGCTCAAAACGGGCCCTGGCGGACAAGGATGTTCGGAATGCCCTTTTCGGATTTTTCAAAATTTCGGAATTTCGGAAATTCCGAACGCAGTTCAGAACATCCCTAGTTTCTTTTAGGATCAATTTTTTTGACCAACTAAGTTAGATATGATAGAACTCTACGAGCACTACAAAATGAAACTATTTGGGACACTGTATCGTGTCTGTGAACAAAGTTACAGACCAAACGGCCAGGGGCCCGTCTGTCCCCGATTTGCAGCTTTAGGCCTTGTAACGTTGTCCATAGACAAGATACAGTTTTACAAACAGTTTTATTTTGTAGTGCTTGTTGAGTTCTATCATGCACCCTTTCAGTTGACCTGAAAATATTGATCCGGGGCCCGCCAGGGCCCGTTTTCAAGCATTTTTCAGTGTCTCATTTCTCACCCTCGATGTCTTCTTCTGTTG</canonical>
            <polymorphic>TTTTTTTAGGTTTTGAAAGAAAATATAAAAATAGAGACTTACTGGAAATCATCAAAATAGAGGTTGTTCGGAATGGCGATAGTATTCTGAAGGAACTCAATCAATGGCATCAATTGATCTTCATTCTTCAGGTGGACCTTCAAATAGACTCGATTGGCATCAACACGTGTCACCACTTGATCTTTTCTTCCTTTGACAATCTTGTGTTCCGTATTGTCCAATCCTTGATTTACCTCTCCAACTTGCTCAATATCCTTTTTCAGAATCGCTTGCTCTCCTCTCTCCTCCAAATCATCCAAGGGAACCGCCATTTCTTGTTCTCCGTTTCCAGGCAACAGCTGGTTCTCCTCATTCTCAACATTCTTCTTCAAATCCACAAGTCTTTCAATCAAACTGTTCAGTTGACCATCCGACAGTTCCGAGAAATCCGGATTCTCATTGTTCACAACAGCCTGGACGTATTGATCCAGAATCTCGTCATCCACGTCTTCATTCTCAGMGTTCAGGGCTTCTGAAATGTTGTTTAGTGCATACTTGAAAAATGGTCCAAAACAAGCTCAAAACGGGCCCTGGCGGACAAGGATGTTCGGAATGCCCTTTTCGGATTTTTCAAAATTTCGGAATTTCGGAAATTCCGAACGCAGTTCAGAACATCCCTAGTTTCTTTTAGGATCAATTTTTTTGACCAACTAAGTTAGATATGATAGAACTCTACGAGCACTACAAAATGAAACTATTTGGGACACTGTATCGTGTCTGTGAACAAAGTTACAGACCAAACGGCCAGGGGCCCGTCTGTCCCCGATTTGCAGCTTTAGGCCTTGTAACGTTGTCCATAGACAAGATACAGTTTTACAAACAGTTTTATTTTGTAGTGCTTGTTGAGTTCTATCATGCACCCTTTCAGTTGACCTGAAAATATTGATCCGGGGCCCGCCAGGGCCCGTTTTCAAGCATTTTTCAGTGTCTCATTTCTCACCCTCGATGTCTTCTTCTGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTTCTTGTTCTCCGTTTC</pcr_primer_p1>
		<pcr_primer_p2>GTTTTGGACCATTTTTCAAGTA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CATTTCTTGTTCTCCGTTTCCAGGCAACAGCTGGTTCTCCTCATTCTCAACATTCTTCTTCAAATCCACAAGTCTTTCAATCAAACTGTTCAGTTGACCATCCGACAGTTCCGAGAAATCCGGATTCTCATTGTTCACAACAGCCTGGACGTATTGATCCAGAATCTCGTCATCCACGTCTTCATTCTCAGCGTTCAGGGCTTCTGAAATGTTGTTTAGTGCATACTTGAAAAATGGTCCAAAAC</canonical_amplicon>
		<polymorphic_amplicon>CATTTCTTGTTCTCCGTTTCCAGGCAACAGCTGGTTCTCCTCATTCTCAACATTCTTCTTCAAATCCACAAGTCTTTCAATCAAACTGTTCAGTTGACCATCCGACAGTTCCGAGAAATCCGGATTCTCATTGTTCACAACAGCCTGGACGTATTGATCCAGAATCTCGTCATCCACGTCTTCATTCTCAGMGTTCAGGGCTTCTGAAATGTTGTTTAGTGCATACTTGAAAAATGGTCCAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39366</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>16084</contig_pos>
        <strand></strand>
        <context>ttgtccatag[A/G]caagatacag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCCGTCTGTCCCCGATTTGCAGCTTTAGGCCTTGTAACGTTGTCCATAG</left_flank>
        <right_flank>CAAGATACAGTTTTACAAACAGTTTTATTTTGTAGTGCTTGTTGAGTTCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTTCTCCTCATTCTCAACATTCTTCTTCAAATCCACAAGTCTTTCAATCAAACTGTTCAGTTGACCATCCGACAGTTCCGAGAAATCCGGATTCTCATTGTTCACAACAGCCTGGACGTATTGATCCAGAATCTCGTCATCCACGTCTTCATTCTCAGCGTTCAGGGCTTCTGAAATGTTGTTTAGTGCATACTTGAAAAATGGTCCAAAACAAGCTCAAAACGGGCCCTGGCGGACAAGGATGTTCGGAATGCCCTTTTCGGATTTTTCAAAATTTCGGAATTTCGGAAATTCCGAACGCAGTTCAGAACATCCCTAGTTTCTTTTAGGATCAATTTTTTTGACCAACTAAGTTAGATATGATAGAACTCTACGAGCACTACAAAATGAAACTATTTGGGACACTGTATCGTGTCTGTGAACAAAGTTACAGACCAAACGGCCAGGGGCCCGTCTGTCCCCGATTTGCAGCTTTAGGCCTTGTAACGTTGTCCATAGACAAGATACAGTTTTACAAACAGTTTTATTTTGTAGTGCTTGTTGAGTTCTATCATGCACCCTTTCAGTTGACCTGAAAATATTGATCCGGGGCCCGCCAGGGCCCGTTTTCAAGCATTTTTCAGTGTCTCATTTCTCACCCTCGATGTCTTCTTCTGTTGGCAATGATGGTTCCTTGAGTTGTTCAATAATCTGAGCCATATCCTCATCAGTCACATTCTCCGGTTGCGCTGCCTCTTCATCCAAAAGCGATGGATCTTCAGACAACCCCGTGTCAATCAACTGGATCAATGCCCAAACATTAGCTGGCTTTCTGACTTGACAGAAGTCCGGATCGTACTGTAGCTGATAGAACATGGACATTTTGAAATAGGCGAGCACACACTGCGTCTCCTCATCTCCCCAATCCCGATCCTTTGATGCCAGTCTCGTCAGCTCCAGTTTCAGCAATTCCAGTTGAGTGTCATCTAGATTGTCGAGGACAGTGGGTTCCGGTGATCC</canonical>
            <polymorphic>GGTTCTCCTCATTCTCAACATTCTTCTTCAAATCCACAAGTCTTTCAATCAAACTGTTCAGTTGACCATCCGACAGTTCCGAGAAATCCGGATTCTCATTGTTCACAACAGCCTGGACGTATTGATCCAGAATCTCGTCATCCACGTCTTCATTCTCAGCGTTCAGGGCTTCTGAAATGTTGTTTAGTGCATACTTGAAAAATGGTCCAAAACAAGCTCAAAACGGGCCCTGGCGGACAAGGATGTTCGGAATGCCCTTTTCGGATTTTTCAAAATTTCGGAATTTCGGAAATTCCGAACGCAGTTCAGAACATCCCTAGTTTCTTTTAGGATCAATTTTTTTGACCAACTAAGTTAGATATGATAGAACTCTACGAGCACTACAAAATGAAACTATTTGGGACACTGTATCGTGTCTGTGAACAAAGTTACAGACCAAACGGCCAGGGGCCCGTCTGTCCCCGATTTGCAGCTTTAGGCCTTGTAACGTTGTCCATAGRCAAGATACAGTTTTACAAACAGTTTTATTTTGTAGTGCTTGTTGAGTTCTATCATGCACCCTTTCAGTTGACCTGAAAATATTGATCCGGGGCCCGCCAGGGCCCGTTTTCAAGCATTTTTCAGTGTCTCATTTCTCACCCTCGATGTCTTCTTCTGTTGGCAATGATGGTTCCTTGAGTTGTTCAATAATCTGAGCCATATCCTCATCAGTCACATTCTCCGGTTGCGCTGCCTCTTCATCCAAAAGCGATGGATCTTCAGACAACCCCGTGTCAATCAACTGGATCAATGCCCAAACATTAGCTGGCTTTCTGACTTGACAGAAGTCCGGATCGTACTGTAGCTGATAGAACATGGACATTTTGAAATAGGCGAGCACACACTGCGTCTCCTCATCTCCCCAATCCCGATCCTTTGATGCCAGTCTCGTCAGCTCCAGTTTCAGCAATTCCAGTTGAGTGTCATCTAGATTGTCGAGGACAGTGGGTTCCGGTGATCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCCAAAACAAGCTCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CACTGAAAAATGCTTGAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>422</pcr_amplicon_size>
		<canonical_amplicon>GTCCAAAACAAGCTCAAAACGGGCCCTGGCGGACAAGGATGTTCGGAATGCCCTTTTCGGATTTTTCAAAATTTCGGAATTTCGGAAATTCCGAACGCAGTTCAGAACATCCCTAGTTTCTTTTAGGATCAATTTTTTTGACCAACTAAGTTAGATATGATAGAACTCTACGAGCACTACAAAATGAAACTATTTGGGACACTGTATCGTGTCTGTGAACAAAGTTACAGACCAAACGGCCAGGGGCCCGTCTGTCCCCGATTTGCAGCTTTAGGCCTTGTAACGTTGTCCATAGACAAGATACAGTTTTACAAACAGTTTTATTTTGTAGTGCTTGTTGAGTTCTATCATGCACCCTTTCAGTTGACCTGAAAATATTGATCCGGGGCCCGCCAGGGCCCGTTTTCAAGCATTTTTCAGTG</canonical_amplicon>
		<polymorphic_amplicon>GTCCAAAACAAGCTCAAAACGGGCCCTGGCGGACAAGGATGTTCGGAATGCCCTTTTCGGATTTTTCAAAATTTCGGAATTTCGGAAATTCCGAACGCAGTTCAGAACATCCCTAGTTTCTTTTAGGATCAATTTTTTTGACCAACTAAGTTAGATATGATAGAACTCTACGAGCACTACAAAATGAAACTATTTGGGACACTGTATCGTGTCTGTGAACAAAGTTACAGACCAAACGGCCAGGGGCCCGTCTGTCCCCGATTTGCAGCTTTAGGCCTTGTAACGTTGTCCATAGRCAAGATACAGTTTTACAAACAGTTTTATTTTGTAGTGCTTGTTGAGTTCTATCATGCACCCTTTCAGTTGACCTGAAAATATTGATCCGGGGCCCGCCAGGGCCCGTTTTCAAGCATTTTTCAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39367</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>16124</contig_pos>
        <strand></strand>
        <context>ttgtagtgct[T/C]gttgagttct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTGTCCATAGACAAGATACAGTTTTACAAACAGTTTTATTTTGTAGTGCT</left_flank>
        <right_flank>GTTGAGTTCTATCATGCACCCTTTCAGTTGACCTGAAAATATTGATCCGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTTCAATCAAACTGTTCAGTTGACCATCCGACAGTTCCGAGAAATCCGGATTCTCATTGTTCACAACAGCCTGGACGTATTGATCCAGAATCTCGTCATCCACGTCTTCATTCTCAGCGTTCAGGGCTTCTGAAATGTTGTTTAGTGCATACTTGAAAAATGGTCCAAAACAAGCTCAAAACGGGCCCTGGCGGACAAGGATGTTCGGAATGCCCTTTTCGGATTTTTCAAAATTTCGGAATTTCGGAAATTCCGAACGCAGTTCAGAACATCCCTAGTTTCTTTTAGGATCAATTTTTTTGACCAACTAAGTTAGATATGATAGAACTCTACGAGCACTACAAAATGAAACTATTTGGGACACTGTATCGTGTCTGTGAACAAAGTTACAGACCAAACGGCCAGGGGCCCGTCTGTCCCCGATTTGCAGCTTTAGGCCTTGTAACGTTGTCCATAGACAAGATACAGTTTTACAAACAGTTTTATTTTGTAGTGCTTGTTGAGTTCTATCATGCACCCTTTCAGTTGACCTGAAAATATTGATCCGGGGCCCGCCAGGGCCCGTTTTCAAGCATTTTTCAGTGTCTCATTTCTCACCCTCGATGTCTTCTTCTGTTGGCAATGATGGTTCCTTGAGTTGTTCAATAATCTGAGCCATATCCTCATCAGTCACATTCTCCGGTTGCGCTGCCTCTTCATCCAAAAGCGATGGATCTTCAGACAACCCCGTGTCAATCAACTGGATCAATGCCCAAACATTAGCTGGCTTTCTGACTTGACAGAAGTCCGGATCGTACTGTAGCTGATAGAACATGGACATTTTGAAATAGGCGAGCACACACTGCGTCTCCTCATCTCCCCAATCCCGATCCTTTGATGCCAGTCTCGTCAGCTCCAGTTTCAGCAATTCCAGTTGAGTGTCATCTAGATTGTCGAGGACAGTGGGTTCCGGTGATCCGCTCTCCGGTGAGAAGCACTGTCCGAACACGCCGTCCGGA</canonical>
            <polymorphic>TCTTTCAATCAAACTGTTCAGTTGACCATCCGACAGTTCCGAGAAATCCGGATTCTCATTGTTCACAACAGCCTGGACGTATTGATCCAGAATCTCGTCATCCACGTCTTCATTCTCAGCGTTCAGGGCTTCTGAAATGTTGTTTAGTGCATACTTGAAAAATGGTCCAAAACAAGCTCAAAACGGGCCCTGGCGGACAAGGATGTTCGGAATGCCCTTTTCGGATTTTTCAAAATTTCGGAATTTCGGAAATTCCGAACGCAGTTCAGAACATCCCTAGTTTCTTTTAGGATCAATTTTTTTGACCAACTAAGTTAGATATGATAGAACTCTACGAGCACTACAAAATGAAACTATTTGGGACACTGTATCGTGTCTGTGAACAAAGTTACAGACCAAACGGCCAGGGGCCCGTCTGTCCCCGATTTGCAGCTTTAGGCCTTGTAACGTTGTCCATAGACAAGATACAGTTTTACAAACAGTTTTATTTTGTAGTGCTYGTTGAGTTCTATCATGCACCCTTTCAGTTGACCTGAAAATATTGATCCGGGGCCCGCCAGGGCCCGTTTTCAAGCATTTTTCAGTGTCTCATTTCTCACCCTCGATGTCTTCTTCTGTTGGCAATGATGGTTCCTTGAGTTGTTCAATAATCTGAGCCATATCCTCATCAGTCACATTCTCCGGTTGCGCTGCCTCTTCATCCAAAAGCGATGGATCTTCAGACAACCCCGTGTCAATCAACTGGATCAATGCCCAAACATTAGCTGGCTTTCTGACTTGACAGAAGTCCGGATCGTACTGTAGCTGATAGAACATGGACATTTTGAAATAGGCGAGCACACACTGCGTCTCCTCATCTCCCCAATCCCGATCCTTTGATGCCAGTCTCGTCAGCTCCAGTTTCAGCAATTCCAGTTGAGTGTCATCTAGATTGTCGAGGACAGTGGGTTCCGGTGATCCGCTCTCCGGTGAGAAGCACTGTCCGAACACGCCGTCCGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCCAAAACAAGCTCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>CACTGAAAAATGCTTGAAAAC</pcr_primer_p2>
		<pcr_amplicon_size>422</pcr_amplicon_size>
		<canonical_amplicon>GTCCAAAACAAGCTCAAAACGGGCCCTGGCGGACAAGGATGTTCGGAATGCCCTTTTCGGATTTTTCAAAATTTCGGAATTTCGGAAATTCCGAACGCAGTTCAGAACATCCCTAGTTTCTTTTAGGATCAATTTTTTTGACCAACTAAGTTAGATATGATAGAACTCTACGAGCACTACAAAATGAAACTATTTGGGACACTGTATCGTGTCTGTGAACAAAGTTACAGACCAAACGGCCAGGGGCCCGTCTGTCCCCGATTTGCAGCTTTAGGCCTTGTAACGTTGTCCATAGACAAGATACAGTTTTACAAACAGTTTTATTTTGTAGTGCTTGTTGAGTTCTATCATGCACCCTTTCAGTTGACCTGAAAATATTGATCCGGGGCCCGCCAGGGCCCGTTTTCAAGCATTTTTCAGTG</canonical_amplicon>
		<polymorphic_amplicon>GTCCAAAACAAGCTCAAAACGGGCCCTGGCGGACAAGGATGTTCGGAATGCCCTTTTCGGATTTTTCAAAATTTCGGAATTTCGGAAATTCCGAACGCAGTTCAGAACATCCCTAGTTTCTTTTAGGATCAATTTTTTTGACCAACTAAGTTAGATATGATAGAACTCTACGAGCACTACAAAATGAAACTATTTGGGACACTGTATCGTGTCTGTGAACAAAGTTACAGACCAAACGGCCAGGGGCCCGTCTGTCCCCGATTTGCAGCTTTAGGCCTTGTAACGTTGTCCATAGACAAGATACAGTTTTACAAACAGTTTTATTTTGTAGTGCTYGTTGAGTTCTATCATGCACCCTTTCAGTTGACCTGAAAATATTGATCCGGGGCCCGCCAGGGCCCGTTTTCAAGCATTTTTCAGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39368</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>16160</contig_pos>
        <strand></strand>
        <context>agttgacctg[A/G]aaatattgaT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTTTGTAGTGCTTGTTGAGTTCTATCATGCACCCTTTCAGTTGACCTG</left_flank>
        <right_flank>AAATATTGATCCGGGGCCCGCCAGGGCCCGTTTTCAAGCATTTTTCAGTG</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCGAGAAATCCGGATTCTCATTGTTCACAACAGCCTGGACGTATTGATCCAGAATCTCGTCATCCACGTCTTCATTCTCAGCGTTCAGGGCTTCTGAAATGTTGTTTAGTGCATACTTGAAAAATGGTCCAAAACAAGCTCAAAACGGGCCCTGGCGGACAAGGATGTTCGGAATGCCCTTTTCGGATTTTTCAAAATTTCGGAATTTCGGAAATTCCGAACGCAGTTCAGAACATCCCTAGTTTCTTTTAGGATCAATTTTTTTGACCAACTAAGTTAGATATGATAGAACTCTACGAGCACTACAAAATGAAACTATTTGGGACACTGTATCGTGTCTGTGAACAAAGTTACAGACCAAACGGCCAGGGGCCCGTCTGTCCCCGATTTGCAGCTTTAGGCCTTGTAACGTTGTCCATAGACAAGATACAGTTTTACAAACAGTTTTATTTTGTAGTGCTTGTTGAGTTCTATCATGCACCCTTTCAGTTGACCTGAAAATATTGATCCGGGGCCCGCCAGGGCCCGTTTTCAAGCATTTTTCAGTGTCTCATTTCTCACCCTCGATGTCTTCTTCTGTTGGCAATGATGGTTCCTTGAGTTGTTCAATAATCTGAGCCATATCCTCATCAGTCACATTCTCCGGTTGCGCTGCCTCTTCATCCAAAAGCGATGGATCTTCAGACAACCCCGTGTCAATCAACTGGATCAATGCCCAAACATTAGCTGGCTTTCTGACTTGACAGAAGTCCGGATCGTACTGTAGCTGATAGAACATGGACATTTTGAAATAGGCGAGCACACACTGCGTCTCCTCATCTCCCCAATCCCGATCCTTTGATGCCAGTCTCGTCAGCTCCAGTTTCAGCAATTCCAGTTGAGTGTCATCTAGATTGTCGAGGACAGTGGGTTCCGGTGATCCGCTCTCCGGTGAGAAGCACTGTCCGAACACGCCGTCCGGATAACACGATTCGTCATTGTCGCATAAATTATCGCTA</canonical>
            <polymorphic>TTCCGAGAAATCCGGATTCTCATTGTTCACAACAGCCTGGACGTATTGATCCAGAATCTCGTCATCCACGTCTTCATTCTCAGCGTTCAGGGCTTCTGAAATGTTGTTTAGTGCATACTTGAAAAATGGTCCAAAACAAGCTCAAAACGGGCCCTGGCGGACAAGGATGTTCGGAATGCCCTTTTCGGATTTTTCAAAATTTCGGAATTTCGGAAATTCCGAACGCAGTTCAGAACATCCCTAGTTTCTTTTAGGATCAATTTTTTTGACCAACTAAGTTAGATATGATAGAACTCTACGAGCACTACAAAATGAAACTATTTGGGACACTGTATCGTGTCTGTGAACAAAGTTACAGACCAAACGGCCAGGGGCCCGTCTGTCCCCGATTTGCAGCTTTAGGCCTTGTAACGTTGTCCATAGACAAGATACAGTTTTACAAACAGTTTTATTTTGTAGTGCTTGTTGAGTTCTATCATGCACCCTTTCAGTTGACCTGRAAATATTGATCCGGGGCCCGCCAGGGCCCGTTTTCAAGCATTTTTCAGTGTCTCATTTCTCACCCTCGATGTCTTCTTCTGTTGGCAATGATGGTTCCTTGAGTTGTTCAATAATCTGAGCCATATCCTCATCAGTCACATTCTCCGGTTGCGCTGCCTCTTCATCCAAAAGCGATGGATCTTCAGACAACCCCGTGTCAATCAACTGGATCAATGCCCAAACATTAGCTGGCTTTCTGACTTGACAGAAGTCCGGATCGTACTGTAGCTGATAGAACATGGACATTTTGAAATAGGCGAGCACACACTGCGTCTCCTCATCTCCCCAATCCCGATCCTTTGATGCCAGTCTCGTCAGCTCCAGTTTCAGCAATTCCAGTTGAGTGTCATCTAGATTGTCGAGGACAGTGGGTTCCGGTGATCCGCTCTCCGGTGAGAAGCACTGTCCGAACACGCCGTCCGGATAACACGATTCGTCATTGTCGCATAAATTATCGCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCCAAAACAAGCTCAAAAC</pcr_primer_p1>
		<pcr_primer_p2>GACACTGAAAAATGCTTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>424</pcr_amplicon_size>
		<canonical_amplicon>GTCCAAAACAAGCTCAAAACGGGCCCTGGCGGACAAGGATGTTCGGAATGCCCTTTTCGGATTTTTCAAAATTTCGGAATTTCGGAAATTCCGAACGCAGTTCAGAACATCCCTAGTTTCTTTTAGGATCAATTTTTTTGACCAACTAAGTTAGATATGATAGAACTCTACGAGCACTACAAAATGAAACTATTTGGGACACTGTATCGTGTCTGTGAACAAAGTTACAGACCAAACGGCCAGGGGCCCGTCTGTCCCCGATTTGCAGCTTTAGGCCTTGTAACGTTGTCCATAGACAAGATACAGTTTTACAAACAGTTTTATTTTGTAGTGCTTGTTGAGTTCTATCATGCACCCTTTCAGTTGACCTGAAAATATTGATCCGGGGCCCGCCAGGGCCCGTTTTCAAGCATTTTTCAGTGTC</canonical_amplicon>
		<polymorphic_amplicon>GTCCAAAACAAGCTCAAAACGGGCCCTGGCGGACAAGGATGTTCGGAATGCCCTTTTCGGATTTTTCAAAATTTCGGAATTTCGGAAATTCCGAACGCAGTTCAGAACATCCCTAGTTTCTTTTAGGATCAATTTTTTTGACCAACTAAGTTAGATATGATAGAACTCTACGAGCACTACAAAATGAAACTATTTGGGACACTGTATCGTGTCTGTGAACAAAGTTACAGACCAAACGGCCAGGGGCCCGTCTGTCCCCGATTTGCAGCTTTAGGCCTTGTAACGTTGTCCATAGACAAGATACAGTTTTACAAACAGTTTTATTTTGTAGTGCTTGTTGAGTTCTATCATGCACCCTTTCAGTTGACCTGRAAATATTGATCCGGGGCCCGCCAGGGCCCGTTTTCAAGCATTTTTCAGTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39369</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>16351</contig_pos>
        <strand>+</strand>
        <context>CTTCAGACAA[C/T]CCCGTGTCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTCCGGTTGCGCTGCCTCTTCATCCAAAAGCGATGGATCTTCAGACAA</left_flank>
        <right_flank>CCCGTGTCAATCAACTGGATCAATGCCCAAACATTAGCTGGCTTTCTGAC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAAAATTTCGGAATTTCGGAAATTCCGAACGCAGTTCAGAACATCCCTAGTTTCTTTTAGGATCAATTTTTTTGACCAACTAAGTTAGATATGATAGAACTCTACGAGCACTACAAAATGAAACTATTTGGGACACTGTATCGTGTCTGTGAACAAAGTTACAGACCAAACGGCCAGGGGCCCGTCTGTCCCCGATTTGCAGCTTTAGGCCTTGTAACGTTGTCCATAGACAAGATACAGTTTTACAAACAGTTTTATTTTGTAGTGCTTGTTGAGTTCTATCATGCACCCTTTCAGTTGACCTGAAAATATTGATCCGGGGCCCGCCAGGGCCCGTTTTCAAGCATTTTTCAGTGTCTCATTTCTCACCCTCGATGTCTTCTTCTGTTGGCAATGATGGTTCCTTGAGTTGTTCAATAATCTGAGCCATATCCTCATCAGTCACATTCTCCGGTTGCGCTGCCTCTTCATCCAAAAGCGATGGATCTTCAGACAACCCCGTGTCAATCAACTGGATCAATGCCCAAACATTAGCTGGCTTTCTGACTTGACAGAAGTCCGGATCGTACTGTAGCTGATAGAACATGGACATTTTGAAATAGGCGAGCACACACTGCGTCTCCTCATCTCCCCAATCCCGATCCTTTGATGCCAGTCTCGTCAGCTCCAGTTTCAGCAATTCCAGTTGAGTGTCATCTAGATTGTCGAGGACAGTGGGTTCCGGTGATCCGCTCTCCGGTGAGAAGCACTGTCCGAACACGCCGTCCGGATAACACGATTCGTCATTGTCGCATAAATTATCGCTAAGGTTGCATCCTGAAAGATTGAGAGTTGAATACAATTAATTGAGTCCCGGATTCTCATTTTATTTTCCCCTTGCATGTTAATGTCAACCTCAAGCCTCTTAATATCACCTGCTAGGAAGGAAGGGGAGCTAAAATGCGTAATAGGAAGGAAGTGCGTGGTCTTAGCTCATTCAGGAAAAGAAGCAAAAGAT</canonical>
            <polymorphic>TTTCAAAATTTCGGAATTTCGGAAATTCCGAACGCAGTTCAGAACATCCCTAGTTTCTTTTAGGATCAATTTTTTTGACCAACTAAGTTAGATATGATAGAACTCTACGAGCACTACAAAATGAAACTATTTGGGACACTGTATCGTGTCTGTGAACAAAGTTACAGACCAAACGGCCAGGGGCCCGTCTGTCCCCGATTTGCAGCTTTAGGCCTTGTAACGTTGTCCATAGACAAGATACAGTTTTACAAACAGTTTTATTTTGTAGTGCTTGTTGAGTTCTATCATGCACCCTTTCAGTTGACCTGAAAATATTGATCCGGGGCCCGCCAGGGCCCGTTTTCAAGCATTTTTCAGTGTCTCATTTCTCACCCTCGATGTCTTCTTCTGTTGGCAATGATGGTTCCTTGAGTTGTTCAATAATCTGAGCCATATCCTCATCAGTCACATTCTCCGGTTGCGCTGCCTCTTCATCCAAAAGCGATGGATCTTCAGACAAYCCCGTGTCAATCAACTGGATCAATGCCCAAACATTAGCTGGCTTTCTGACTTGACAGAAGTCCGGATCGTACTGTAGCTGATAGAACATGGACATTTTGAAATAGGCGAGCACACACTGCGTCTCCTCATCTCCCCAATCCCGATCCTTTGATGCCAGTCTCGTCAGCTCCAGTTTCAGCAATTCCAGTTGAGTGTCATCTAGATTGTCGAGGACAGTGGGTTCCGGTGATCCGCTCTCCGGTGAGAAGCACTGTCCGAACACGCCGTCCGGATAACACGATTCGTCATTGTCGCATAAATTATCGCTAAGGTTGCATCCTGAAAGATTGAGAGTTGAATACAATTAATTGAGTCCCGGATTCTCATTTTATTTTCCCCTTGCATGTTAATGTCAACCTCAAGCCTCTTAATATCACCTGCTAGGAAGGAAGGGGAGCTAAAATGCGTAATAGGAAGGAAGTGCGTGGTCTTAGCTCATTCAGGAAAAGAAGCAAAAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTTTTCAGTGTCTCATTTCTC</pcr_primer_p1>
		<pcr_primer_p2>AAATGTCCATGTTCTATCAGCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CATTTTTCAGTGTCTCATTTCTCACCCTCGATGTCTTCTTCTGTTGGCAATGATGGTTCCTTGAGTTGTTCAATAATCTGAGCCATATCCTCATCAGTCACATTCTCCGGTTGCGCTGCCTCTTCATCCAAAAGCGATGGATCTTCAGACAACCCCGTGTCAATCAACTGGATCAATGCCCAAACATTAGCTGGCTTTCTGACTTGACAGAAGTCCGGATCGTACTGTAGCTGATAGAACATGGACATTT</canonical_amplicon>
		<polymorphic_amplicon>CATTTTTCAGTGTCTCATTTCTCACCCTCGATGTCTTCTTCTGTTGGCAATGATGGTTCCTTGAGTTGTTCAATAATCTGAGCCATATCCTCATCAGTCACATTCTCCGGTTGCGCTGCCTCTTCATCCAAAAGCGATGGATCTTCAGACAAYCCCGTGTCAATCAACTGGATCAATGCCCAAACATTAGCTGGCTTTCTGACTTGACAGAAGTCCGGATCGTACTGTAGCTGATAGAACATGGACATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39370</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>25624</contig_pos>
        <strand>+</strand>
        <context>aacttgtcaa[C/T/G]taataaatta</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T/G</alleles>
        <left_flank>TTTGAGCTCAATTATCTCAATTCCAGTAAAAGATATCGAAAACTTGTCAA</left_flank>
        <right_flank>TAATAAATTAGTTATCATAATATCAGCAATATTTTATCAGTGGACAAATT</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGTTGACTAAATTTTGATATCTTTTACAGGAATCGAGATAATTGAGCTCAAAGTTGGCATTTAGGTAGACTTCTACTAGGAGATACGGTAGACAAGTTTGAAACCCTACGAAAGTTATTAAAACCTGTTATATTTGTCTGAAATTTTTAGAGTATACTAAGCAAAACTAGAGCTTCATTTTTGTAACTGACAACTTGTTTCTAGCAAAAACAGTTTTTGAGTTATGCGCCTTTAAAGATGGGATGCTTGATTACCGAGAGAGGCGAGACGCAGACACCCAGTTTTTAGAGGCGCATATCTCAAAAACCAAAATAGACGCAAAAAAGTTGTCAGATAAAAATTCGAAGTTCTATTTTCGTTTAGTATAACCTGAATATTTGCAGTGCAATGGAAAATTCTGAAACTTTTTTTCCGAATTTTCAGAAATACCGTATTCCTTCTGTCAACTTTGAGCTCAATTATCTCAATTCCAGTAAAAGATATCGAAAACTTGTCAAGTAATAAATTAGTTATCATAATATCAGCAATATTTTATCAGTGGACAAATTTCTGATATCTTTCAGAGGAATTGAGATAATTGAGCTGAAAATGGACTGCAGAGATACGGTATTGGAATCTAATTGTAATTTAAAGAACTCCCAAACTTTGAAAAATCTCCACATTATGGATTCTTGGAATCCCGGACTTTTTAGAATCACATCATAATTTAAATTTCCAAGTTTTCTAATCAGAAATTTTCGCCATTTCCCAGCTCCCCCTGGAGACATTATGATCAAAATTTTTATTTTCTACTTTTTCCAAGAATTCCCATTCCGGGATTCTTTGAAAAAAGGGACAACATGAAATAATGGGAAAACCAGAAAGCACTCAAGAAAAGAAATAAAAAATGGGAAAATGGACTACGGTAGTTTATGGGTCTTTTGAGAATCAAAAATCGGTGGTGGGAGTGTGAATAGAAAAGGAAATTGAAATAAGGTGGGCTTATTCAAAAATAATGT</canonical>
            <polymorphic>TCAGTTGACTAAATTTTGATATCTTTTACAGGAATCGAGATAATTGAGCTCAAAGTTGGCATTTAGGTAGACTTCTACTAGGAGATACGGTAGACAAGTTTGAAACCCTACGAAAGTTATTAAAACCTGTTATATTTGTCTGAAATTTTTAGAGTATACTAAGCAAAACTAGAGCTTCATTTTTGTAACTGACAACTTGTTTCTAGCAAAAACAGTTTTTGAGTTATGCGCCTTTAAAGATGGGATGCTTGATTACCGAGAGAGGCGAGACGCAGACACCCAGTTTTTAGAGGCGCATATCTCAAAAACCAAAATAGACGCAAAAAAGTTGTCAGATAAAAATTCGAAGTTCTATTTTCGTTTAGTATAACCTGAATATTTGCAGTGCAATGGAAAATTCTGAAACTTTTTTTCCGAATTTTCAGAAATACCGTATTCCTTCTGTCAACTTTGAGCTCAATTATCTCAATTCCAGTAAAAGATATCGAAAACTTGTCAAYTAATAAATTAGTTATCATAATATCAGCAATATTTTATCAGTGGACAAATTTCTGATATCTTTCAGAGGAATTGAGATAATTGAGCTGAAAATGGACTGCAGAGATACGGTATTGGAATCTAATTGTAATTTAAAGAACTCCCAAACTTTGAAAAATCTCCACATTATGGATTCTTGGAATCCCGGACTTTTTAGAATCACATCATAATTTAAATTTCCAAGTTTTCTAATCAGAAATTTTCGCCATTTCCCAGCTCCCCCTGGAGACATTATGATCAAAATTTTTATTTTCTACTTTTTCCAAGAATTCCCATTCCGGGATTCTTTGAAAAAAGGGACAACATGAAATAATGGGAAAACCAGAAAGCACTCAAGAAAAGAAATAAAAAATGGGAAAATGGACTACGGTAGTTTATGGGTCTTTTGAGAATCAAAAATCGGTGGTGGGAGTGTGAATAGAAAAGGAAATTGAAATAAGGTGGGCTTATTCAAAAATAATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAATGGAAAATTCTGAAACT</pcr_primer_p1>
		<pcr_primer_p2>TAGATTCCAATACCGTATCTCTG</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>GCAATGGAAAATTCTGAAACTTTTTTTCCGAATTTTCAGAAATACCGTATTCCTTCTGTCAACTTTGAGCTCAATTATCTCAATTCCAGTAAAAGATATCGAAAACTTGTCAAGTAATAAATTAGTTATCATAATATCAGCAATATTTTATCAGTGGACAAATTTCTGATATCTTTCAGAGGAATTGAGATAATTGAGCTGAAAATGGACTGCAGAGATACGGTATTGGAATCTA</canonical_amplicon>
		<polymorphic_amplicon>GCAATGGAAAATTCTGAAACTTTTTTTCCGAATTTTCAGAAATACCGTATTCCTTCTGTCAACTTTGAGCTCAATTATCTCAATTCCAGTAAAAGATATCGAAAACTTGTCAAYTAATAAATTAGTTATCATAATATCAGCAATATTTTATCAGTGGACAAATTTCTGATATCTTTCAGAGGAATTGAGATAATTGAGCTGAAAATGGACTGCAGAGATACGGTATTGGAATCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39371</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>26093</contig_pos>
        <strand></strand>
        <context>AAAAGGAAAT[T/C]GAAATAAGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCTTTTGAGAATCAAAAATCGGTGGTGGGAGTGTGAATAGAAAAGGAAAT</left_flank>
        <right_flank>GAAATAAGGTGGGCTTATTCAAAAATAATGTTTTTTCAGAAATTGGTTTG</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCAGTAAAAGATATCGAAAACTTGTCAAGTAATAAATTAGTTATCATAATATCAGCAATATTTTATCAGTGGACAAATTTCTGATATCTTTCAGAGGAATTGAGATAATTGAGCTGAAAATGGACTGCAGAGATACGGTATTGGAATCTAATTGTAATTTAAAGAACTCCCAAACTTTGAAAAATCTCCACATTATGGATTCTTGGAATCCCGGACTTTTTAGAATCACATCATAATTTAAATTTCCAAGTTTTCTAATCAGAAATTTTCGCCATTTCCCAGCTCCCCCTGGAGACATTATGATCAAAATTTTTATTTTCTACTTTTTCCAAGAATTCCCATTCCGGGATTCTTTGAAAAAAGGGACAACATGAAATAATGGGAAAACCAGAAAGCACTCAAGAAAAGAAATAAAAAATGGGAAAATGGACTACGGTAGTTTATGGGTCTTTTGAGAATCAAAAATCGGTGGTGGGAGTGTGAATAGAAAAGGAAATTGAAATAAGGTGGGCTTATTCAAAAATAATGTTTTTTCAGAAATTGGTTTGTATGAAACATGGTGGAGCTTCTGATCTCAAATCTGAAATATTGGAAAACACGAACATTTTCAGGCACATTACCGTATTTGCCCCAATCGAAAGCCACCCTATATGTGCAGCTTGATTATTTCGGTTCTTTTAAAAGATATCAACAAATTTTGAACTGATAAACTGTTTATCATAATATCACCAATGTTTTATCAGTTGGGATACTTTTAATATCTCTCATAGGAACCGAGATAATTGAGCTTAAAGTGCACGTATAAGGGGGGCTTCTATTTGAGCACATACGGTAATCAACCATATTTTGAGGAGCACTTGATTTTTGATGTGAAAACAAAACATTAACAAATAATAATATTGCCAATCTGCGTTCCTCTAATCTTTTCGTATAGACCATCAACCTTCAGAACATATGATCAGATGACGTGGCAAGATTAGAATATGTACGACATTTAG</canonical>
            <polymorphic>TTCCAGTAAAAGATATCGAAAACTTGTCAAGTAATAAATTAGTTATCATAATATCAGCAATATTTTATCAGTGGACAAATTTCTGATATCTTTCAGAGGAATTGAGATAATTGAGCTGAAAATGGACTGCAGAGATACGGTATTGGAATCTAATTGTAATTTAAAGAACTCCCAAACTTTGAAAAATCTCCACATTATGGATTCTTGGAATCCCGGACTTTTTAGAATCACATCATAATTTAAATTTCCAAGTTTTCTAATCAGAAATTTTCGCCATTTCCCAGCTCCCCCTGGAGACATTATGATCAAAATTTTTATTTTCTACTTTTTCCAAGAATTCCCATTCCGGGATTCTTTGAAAAAAGGGACAACATGAAATAATGGGAAAACCAGAAAGCACTCAAGAAAAGAAATAAAAAATGGGAAAATGGACTACGGTAGTTTATGGGTCTTTTGAGAATCAAAAATCGGTGGTGGGAGTGTGAATAGAAAAGGAAATYGAAATAAGGTGGGCTTATTCAAAAATAATGTTTTTTCAGAAATTGGTTTGTATGAAACATGGTGGAGCTTCTGATCTCAAATCTGAAATATTGGAAAACACGAACATTTTCAGGCACATTACCGTATTTGCCCCAATCGAAAGCCACCCTATATGTGCAGCTTGATTATTTCGGTTCTTTTAAAAGATATCAACAAATTTTGAACTGATAAACTGTTTATCATAATATCACCAATGTTTTATCAGTTGGGATACTTTTAATATCTCTCATAGGAACCGAGATAATTGAGCTTAAAGTGCACGTATAAGGGGGGCTTCTATTTGAGCACATACGGTAATCAACCATATTTTGAGGAGCACTTGATTTTTGATGTGAAAACAAAACATTAACAAATAATAATATTGCCAATCTGCGTTCCTCTAATCTTTTCGTATAGACCATCAACCTTCAGAACATATGATCAGATGACGTGGCAAGATTAGAATATGTACGACATTTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>218 161 155 87 79 44 44 43 41 36 26 23 22 9 6 6</canonical_bands>
                <polymorphic_bands>218 205 155 87 79 44 43 41 36 26 23 22 9 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTTATTTTCTACTTTTTCCAAGA</pcr_primer_p1>
		<pcr_primer_p2>CATGTTTCATACAAACCAATTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTTTATTTTCTACTTTTTCCAAGAATTCCCATTCCGGGATTCTTTGAAAAAAGGGACAACATGAAATAATGGGAAAACCAGAAAGCACTCAAGAAAAGAAATAAAAAATGGGAAAATGGACTACGGTAGTTTATGGGTCTTTTGAGAATCAAAAATCGGTGGTGGGAGTGTGAATAGAAAAGGAAATTGAAATAAGGTGGGCTTATTCAAAAATAATGTTTTTTCAGAAATTGGTTTGTATGAAACATG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTATTTTCTACTTTTTCCAAGAATTCCCATTCCGGGATTCTTTGAAAAAAGGGACAACATGAAATAATGGGAAAACCAGAAAGCACTCAAGAAAAGAAATAAAAAATGGGAAAATGGACTACGGTAGTTTATGGGTCTTTTGAGAATCAAAAATCGGTGGTGGGAGTGTGAATAGAAAAGGAAATYGAAATAAGGTGGGCTTATTCAAAAATAATGTTTTTTCAGAAATTGGTTTGTATGAAACATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39372</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>26171</contig_pos>
        <strand></strand>
        <context>CTTCTGATCT[C/G]AAATCTGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATGTTTTTTCAGAAATTGGTTTGTATGAAACATGGTGGAGCTTCTGATCT</left_flank>
        <right_flank>AAATCTGAAATATTGGAAAACACGAACATTTTCAGGCACATTACCGTATT</right_flank>
        <qual_score>31</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCTGATATCTTTCAGAGGAATTGAGATAATTGAGCTGAAAATGGACTGCAGAGATACGGTATTGGAATCTAATTGTAATTTAAAGAACTCCCAAACTTTGAAAAATCTCCACATTATGGATTCTTGGAATCCCGGACTTTTTAGAATCACATCATAATTTAAATTTCCAAGTTTTCTAATCAGAAATTTTCGCCATTTCCCAGCTCCCCCTGGAGACATTATGATCAAAATTTTTATTTTCTACTTTTTCCAAGAATTCCCATTCCGGGATTCTTTGAAAAAAGGGACAACATGAAATAATGGGAAAACCAGAAAGCACTCAAGAAAAGAAATAAAAAATGGGAAAATGGACTACGGTAGTTTATGGGTCTTTTGAGAATCAAAAATCGGTGGTGGGAGTGTGAATAGAAAAGGAAATTGAAATAAGGTGGGCTTATTCAAAAATAATGTTTTTTCAGAAATTGGTTTGTATGAAACATGGTGGAGCTTCTGATCTCAAATCTGAAATATTGGAAAACACGAACATTTTCAGGCACATTACCGTATTTGCCCCAATCGAAAGCCACCCTATATGTGCAGCTTGATTATTTCGGTTCTTTTAAAAGATATCAACAAATTTTGAACTGATAAACTGTTTATCATAATATCACCAATGTTTTATCAGTTGGGATACTTTTAATATCTCTCATAGGAACCGAGATAATTGAGCTTAAAGTGCACGTATAAGGGGGGCTTCTATTTGAGCACATACGGTAATCAACCATATTTTGAGGAGCACTTGATTTTTGATGTGAAAACAAAACATTAACAAATAATAATATTGCCAATCTGCGTTCCTCTAATCTTTTCGTATAGACCATCAACCTTCAGAACATATGATCAGATGACGTGGCAAGATTAGAATATGTACGACATTTAGGGGGGGGGGGGGGGAGGGGTGGAAATTAGATTAGAATCAAATTGAAGATTATCTGTTTGGAAATAGATCATGAGGGGA</canonical>
            <polymorphic>ATTTCTGATATCTTTCAGAGGAATTGAGATAATTGAGCTGAAAATGGACTGCAGAGATACGGTATTGGAATCTAATTGTAATTTAAAGAACTCCCAAACTTTGAAAAATCTCCACATTATGGATTCTTGGAATCCCGGACTTTTTAGAATCACATCATAATTTAAATTTCCAAGTTTTCTAATCAGAAATTTTCGCCATTTCCCAGCTCCCCCTGGAGACATTATGATCAAAATTTTTATTTTCTACTTTTTCCAAGAATTCCCATTCCGGGATTCTTTGAAAAAAGGGACAACATGAAATAATGGGAAAACCAGAAAGCACTCAAGAAAAGAAATAAAAAATGGGAAAATGGACTACGGTAGTTTATGGGTCTTTTGAGAATCAAAAATCGGTGGTGGGAGTGTGAATAGAAAAGGAAATTGAAATAAGGTGGGCTTATTCAAAAATAATGTTTTTTCAGAAATTGGTTTGTATGAAACATGGTGGAGCTTCTGATCTSAAATCTGAAATATTGGAAAACACGAACATTTTCAGGCACATTACCGTATTTGCCCCAATCGAAAGCCACCCTATATGTGCAGCTTGATTATTTCGGTTCTTTTAAAAGATATCAACAAATTTTGAACTGATAAACTGTTTATCATAATATCACCAATGTTTTATCAGTTGGGATACTTTTAATATCTCTCATAGGAACCGAGATAATTGAGCTTAAAGTGCACGTATAAGGGGGGCTTCTATTTGAGCACATACGGTAATCAACCATATTTTGAGGAGCACTTGATTTTTGATGTGAAAACAAAACATTAACAAATAATAATATTGCCAATCTGCGTTCCTCTAATCTTTTCGTATAGACCATCAACCTTCAGAACATATGATCAGATGACGTGGCAAGATTAGAATATGTACGACATTTAGGGGGGGGGGGGGGGAGGGGTGGAAATTAGATTAGAATCAAATTGAAGATTATCTGTTTGGAAATAGATCATGAGGGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGGCTTATTCAAAAATAATGT</pcr_primer_p1>
		<pcr_primer_p2>AATATGGTTGATTACCGTATGTG</pcr_primer_p2>
		<pcr_amplicon_size>339</pcr_amplicon_size>
		<canonical_amplicon>TGGGCTTATTCAAAAATAATGTTTTTTCAGAAATTGGTTTGTATGAAACATGGTGGAGCTTCTGATCTCAAATCTGAAATATTGGAAAACACGAACATTTTCAGGCACATTACCGTATTTGCCCCAATCGAAAGCCACCCTATATGTGCAGCTTGATTATTTCGGTTCTTTTAAAAGATATCAACAAATTTTGAACTGATAAACTGTTTATCATAATATCACCAATGTTTTATCAGTTGGGATACTTTTAATATCTCTCATAGGAACCGAGATAATTGAGCTTAAAGTGCACGTATAAGGGGGGCTTCTATTTGAGCACATACGGTAATCAACCATATT</canonical_amplicon>
		<polymorphic_amplicon>TGGGCTTATTCAAAAATAATGTTTTTTCAGAAATTGGTTTGTATGAAACATGGTGGAGCTTCTGATCTSAAATCTGAAATATTGGAAAACACGAACATTTTCAGGCACATTACCGTATTTGCCCCAATCGAAAGCCACCCTATATGTGCAGCTTGATTATTTCGGTTCTTTTAAAAGATATCAACAAATTTTGAACTGATAAACTGTTTATCATAATATCACCAATGTTTTATCAGTTGGGATACTTTTAATATCTCTCATAGGAACCGAGATAATTGAGCTTAAAGTGCACGTATAAGGGGGGCTTCTATTTGAGCACATACGGTAATCAACCATATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39373</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>30333</contig_pos>
        <strand>+</strand>
        <context>ttgattcaag[C/T]gagatatgct</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGAGCTTCAGTTTTGTAGTTGACAACTTTTTTGTACATATTGATTCAAG</left_flank>
        <right_flank>GAGATATGCTGCTTCAAACCACGGTAAGTGGCAAAACTAGAACTTCCAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAAATGATCGGCTTGATAGAAGTTAGTACAAGTTGTGATTGAGCCATCTGGAAGTTTGGGAAATGGAGGAAATTGAAATTTCAGAAAAACTCAATTATGAAAAGAGAGTGTTTAACAAAATTTTATCAATTTTATCTTTTTTTTTTAATCGAAAATACCGAATCTCCTCTAAAAGTAGCCTACCCGAACCGTCAACTTTGAACTCAATTATCTCGATTTCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTTGTGATATTGTGATAAATAGTTTATTAGTTGACAAATTTTTTATATCTCTTACAGGAAATGAGATAATTGAGATTAAAGTTTACCGTTTTGGTGGGCTTCAGAATATACGGTAGTCAATTTGGATGTCTAAAAATTATAGTAGAATTTTTTGTATAAAACTGAAATTTTCAGAGTATACTAAACAAAAATAGAGCTTCAGTTTTGTAGTTGACAACTTTTTTGTACATATTGATTCAAGTGAGATATGCTGCTTCAAACCACGGTAAGTGGCAAAACTAGAACTTCCAGAACATTTGAATACTCACCAATTTTCAATCCAACCATATATGACGCTGGTATTCCTTCTGACATACTAATCAATGTGAAAGTGAACAGAGTCCAGGCAAGACGAGTTCTTGCAGACTTGAAAATTGAAGTTTCCGATGCAAAGCTTCCAACCTGAAAAGTTACAAAAGTTACTGTAAACACTCTAATAGAAGGTCACTCAACCCTTCAACTTTGAGCCCATATATCTCAATTCCTGTGAAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTCGCGGTATCTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATTTTCAATGATGACGAATCTCTCATTGACTAATGCACCAAATGCTTTTAACGAAAAGGTGCTTCGAAATTTCAAGTTCAATGAGGATTGCTGTACTTTTACGAGCTACATTAAGGGATT</canonical>
            <polymorphic>TCAAATGATCGGCTTGATAGAAGTTAGTACAAGTTGTGATTGAGCCATCTGGAAGTTTGGGAAATGGAGGAAATTGAAATTTCAGAAAAACTCAATTATGAAAAGAGAGTGTTTAACAAAATTTTATCAATTTTATCTTTTTTTTTTAATCGAAAATACCGAATCTCCTCTAAAAGTAGCCTACCCGAACCGTCAACTTTGAACTCAATTATCTCGATTTCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTTGTGATATTGTGATAAATAGTTTATTAGTTGACAAATTTTTTATATCTCTTACAGGAAATGAGATAATTGAGATTAAAGTTTACCGTTTTGGTGGGCTTCAGAATATACGGTAGTCAATTTGGATGTCTAAAAATTATAGTAGAATTTTTTGTATAAAACTGAAATTTTCAGAGTATACTAAACAAAAATAGAGCTTCAGTTTTGTAGTTGACAACTTTTTTGTACATATTGATTCAAGYGAGATATGCTGCTTCAAACCACGGTAAGTGGCAAAACTAGAACTTCCAGAACATTTGAATACTCACCAATTTTCAATCCAACCATATATGACGCTGGTATTCCTTCTGACATACTAATCAATGTGAAAGTGAACAGAGTCCAGGCAAGACGAGTTCTTGCAGACTTGAAAATTGAAGTTTCCGATGCAAAGCTTCCAACCTGAAAAGTTACAAAAGTTACTGTAAACACTCTAATAGAAGGTCACTCAACCCTTCAACTTTGAGCCCATATATCTCAATTCCTGTGAAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTCGCGGTATCTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATTTTCAATGATGACGAATCTCTCATTGACTAATGCACCAAATGCTTTTAACGAAAAGGTGCTTCGAAATTTCAAGTTCAATGAGGATTGCTGTACTTTTACGAGCTACATTAAGGGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>153 147 131 97 82 73 60 59 42 38 35 24 20 16 9 8 6</canonical_bands>
                <polymorphic_bands>167 153 131 97 82 73 60 59 42 38 35 24 16 9 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTAATCGAAAATACCGAATCT</pcr_primer_p1>
		<pcr_primer_p2>TGGTGAGTATTCAAATGTTCTG</pcr_primer_p2>
		<pcr_amplicon_size>424</pcr_amplicon_size>
		<canonical_amplicon>TTTAATCGAAAATACCGAATCTCCTCTAAAAGTAGCCTACCCGAACCGTCAACTTTGAACTCAATTATCTCGATTTCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTTGTGATATTGTGATAAATAGTTTATTAGTTGACAAATTTTTTATATCTCTTACAGGAAATGAGATAATTGAGATTAAAGTTTACCGTTTTGGTGGGCTTCAGAATATACGGTAGTCAATTTGGATGTCTAAAAATTATAGTAGAATTTTTTGTATAAAACTGAAATTTTCAGAGTATACTAAACAAAAATAGAGCTTCAGTTTTGTAGTTGACAACTTTTTTGTACATATTGATTCAAGTGAGATATGCTGCTTCAAACCACGGTAAGTGGCAAAACTAGAACTTCCAGAACATTTGAATACTCACCA</canonical_amplicon>
		<polymorphic_amplicon>TTTAATCGAAAATACCGAATCTCCTCTAAAAGTAGCCTACCCGAACCGTCAACTTTGAACTCAATTATCTCGATTTCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTTGTGATATTGTGATAAATAGTTTATTAGTTGACAAATTTTTTATATCTCTTACAGGAAATGAGATAATTGAGATTAAAGTTTACCGTTTTGGTGGGCTTCAGAATATACGGTAGTCAATTTGGATGTCTAAAAATTATAGTAGAATTTTTTGTATAAAACTGAAATTTTCAGAGTATACTAAACAAAAATAGAGCTTCAGTTTTGTAGTTGACAACTTTTTTGTACATATTGATTCAAGYGAGATATGCTGCTTCAAACCACGGTAAGTGGCAAAACTAGAACTTCCAGAACATTTGAATACTCACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39374</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>30376</contig_pos>
        <strand></strand>
        <context>AAAACTAGAA[C/T]TTCCAGAACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCAAGTGAGATATGCTGCTTCAAACCACGGTAAGTGGCAAAACTAGAA</left_flank>
        <right_flank>TTCCAGAACATTTGAATACTCACCAATTTTCAATCCAACCATATATGACG</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCATCTGGAAGTTTGGGAAATGGAGGAAATTGAAATTTCAGAAAAACTCAATTATGAAAAGAGAGTGTTTAACAAAATTTTATCAATTTTATCTTTTTTTTTTAATCGAAAATACCGAATCTCCTCTAAAAGTAGCCTACCCGAACCGTCAACTTTGAACTCAATTATCTCGATTTCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTTGTGATATTGTGATAAATAGTTTATTAGTTGACAAATTTTTTATATCTCTTACAGGAAATGAGATAATTGAGATTAAAGTTTACCGTTTTGGTGGGCTTCAGAATATACGGTAGTCAATTTGGATGTCTAAAAATTATAGTAGAATTTTTTGTATAAAACTGAAATTTTCAGAGTATACTAAACAAAAATAGAGCTTCAGTTTTGTAGTTGACAACTTTTTTGTACATATTGATTCAAGTGAGATATGCTGCTTCAAACCACGGTAAGTGGCAAAACTAGAACTTCCAGAACATTTGAATACTCACCAATTTTCAATCCAACCATATATGACGCTGGTATTCCTTCTGACATACTAATCAATGTGAAAGTGAACAGAGTCCAGGCAAGACGAGTTCTTGCAGACTTGAAAATTGAAGTTTCCGATGCAAAGCTTCCAACCTGAAAAGTTACAAAAGTTACTGTAAACACTCTAATAGAAGGTCACTCAACCCTTCAACTTTGAGCCCATATATCTCAATTCCTGTGAAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTCGCGGTATCTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATTTTCAATGATGACGAATCTCTCATTGACTAATGCACCAAATGCTTTTAACGAAAAGGTGCTTCGAAATTTCAAGTTCAATGAGGATTGCTGTACTTTTACGAGCTACATTAAGGGATTGTCTTCTTCGTTTTTCGGTTGGATTTCGAAATTGGAAATTTTA</canonical>
            <polymorphic>GCCATCTGGAAGTTTGGGAAATGGAGGAAATTGAAATTTCAGAAAAACTCAATTATGAAAAGAGAGTGTTTAACAAAATTTTATCAATTTTATCTTTTTTTTTTAATCGAAAATACCGAATCTCCTCTAAAAGTAGCCTACCCGAACCGTCAACTTTGAACTCAATTATCTCGATTTCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTTGTGATATTGTGATAAATAGTTTATTAGTTGACAAATTTTTTATATCTCTTACAGGAAATGAGATAATTGAGATTAAAGTTTACCGTTTTGGTGGGCTTCAGAATATACGGTAGTCAATTTGGATGTCTAAAAATTATAGTAGAATTTTTTGTATAAAACTGAAATTTTCAGAGTATACTAAACAAAAATAGAGCTTCAGTTTTGTAGTTGACAACTTTTTTGTACATATTGATTCAAGTGAGATATGCTGCTTCAAACCACGGTAAGTGGCAAAACTAGAAYTTCCAGAACATTTGAATACTCACCAATTTTCAATCCAACCATATATGACGCTGGTATTCCTTCTGACATACTAATCAATGTGAAAGTGAACAGAGTCCAGGCAAGACGAGTTCTTGCAGACTTGAAAATTGAAGTTTCCGATGCAAAGCTTCCAACCTGAAAAGTTACAAAAGTTACTGTAAACACTCTAATAGAAGGTCACTCAACCCTTCAACTTTGAGCCCATATATCTCAATTCCTGTGAAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTCGCGGTATCTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATTTTCAATGATGACGAATCTCTCATTGACTAATGCACCAAATGCTTTTAACGAAAAGGTGCTTCGAAATTTCAAGTTCAATGAGGATTGCTGTACTTTTACGAGCTACATTAAGGGATTGTCTTCTTCGTTTTTCGGTTGGATTTCGAAATTGGAAATTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTAATCGAAAATACCGAATCT</pcr_primer_p1>
		<pcr_primer_p2>GAAGGAATACCAGCGTCATA</pcr_primer_p2>
		<pcr_amplicon_size>462</pcr_amplicon_size>
		<canonical_amplicon>TTTAATCGAAAATACCGAATCTCCTCTAAAAGTAGCCTACCCGAACCGTCAACTTTGAACTCAATTATCTCGATTTCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTTGTGATATTGTGATAAATAGTTTATTAGTTGACAAATTTTTTATATCTCTTACAGGAAATGAGATAATTGAGATTAAAGTTTACCGTTTTGGTGGGCTTCAGAATATACGGTAGTCAATTTGGATGTCTAAAAATTATAGTAGAATTTTTTGTATAAAACTGAAATTTTCAGAGTATACTAAACAAAAATAGAGCTTCAGTTTTGTAGTTGACAACTTTTTTGTACATATTGATTCAAGTGAGATATGCTGCTTCAAACCACGGTAAGTGGCAAAACTAGAACTTCCAGAACATTTGAATACTCACCAATTTTCAATCCAACCATATATGACGCTGGTATTCCTTC</canonical_amplicon>
		<polymorphic_amplicon>TTTAATCGAAAATACCGAATCTCCTCTAAAAGTAGCCTACCCGAACCGTCAACTTTGAACTCAATTATCTCGATTTCTATGAGAGATATCAAAATTTTGTCAACTGATAAAATATTTGTGATATTGTGATAAATAGTTTATTAGTTGACAAATTTTTTATATCTCTTACAGGAAATGAGATAATTGAGATTAAAGTTTACCGTTTTGGTGGGCTTCAGAATATACGGTAGTCAATTTGGATGTCTAAAAATTATAGTAGAATTTTTTGTATAAAACTGAAATTTTCAGAGTATACTAAACAAAAATAGAGCTTCAGTTTTGTAGTTGACAACTTTTTTGTACATATTGATTCAAGTGAGATATGCTGCTTCAAACCACGGTAAGTGGCAAAACTAGAAYTTCCAGAACATTTGAATACTCACCAATTTTCAATCCAACCATATATGACGCTGGTATTCCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39375</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>30619</contig_pos>
        <strand>+</strand>
        <context>caattcctgt[A/G]aaagatatcg</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGAAGGTCACTCAACCCTTCAACTTTGAGCCCATATATCTCAATTCCTGT</left_flank>
        <right_flank>AAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTCGCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTGACAAATTTTTTATATCTCTTACAGGAAATGAGATAATTGAGATTAAAGTTTACCGTTTTGGTGGGCTTCAGAATATACGGTAGTCAATTTGGATGTCTAAAAATTATAGTAGAATTTTTTGTATAAAACTGAAATTTTCAGAGTATACTAAACAAAAATAGAGCTTCAGTTTTGTAGTTGACAACTTTTTTGTACATATTGATTCAAGTGAGATATGCTGCTTCAAACCACGGTAAGTGGCAAAACTAGAACTTCCAGAACATTTGAATACTCACCAATTTTCAATCCAACCATATATGACGCTGGTATTCCTTCTGACATACTAATCAATGTGAAAGTGAACAGAGTCCAGGCAAGACGAGTTCTTGCAGACTTGAAAATTGAAGTTTCCGATGCAAAGCTTCCAACCTGAAAAGTTACAAAAGTTACTGTAAACACTCTAATAGAAGGTCACTCAACCCTTCAACTTTGAGCCCATATATCTCAATTCCTGTGAAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTCGCGGTATCTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATTTTCAATGATGACGAATCTCTCATTGACTAATGCACCAAATGCTTTTAACGAAAAGGTGCTTCGAAATTTCAAGTTCAATGAGGATTGCTGTACTTTTACGAGCTACATTAAGGGATTGTCTTCTTCGTTTTTCGGTTGGATTTCGAAATTGGAAATTTTAGGGACCAGAAAAATTCAAAAACTCACACTTTCCGCTCGATTCTTATAGCAATACAATGCGATCAGCACAAATGACAAGGTGATGATTGGAATGAGGAATGATAACGAAACTATGACAACTGGAAATAGGATTTTTCGGGGAGCCCTTGTTCTGCCAAACTCGAATTTTTATGAGTTTTTAAAAACTAACAAAAATGAACCAAGTTATGAATATTTTTCCGAAAAGTCGAGGATCAGAGAAACC</canonical>
            <polymorphic>AGTTGACAAATTTTTTATATCTCTTACAGGAAATGAGATAATTGAGATTAAAGTTTACCGTTTTGGTGGGCTTCAGAATATACGGTAGTCAATTTGGATGTCTAAAAATTATAGTAGAATTTTTTGTATAAAACTGAAATTTTCAGAGTATACTAAACAAAAATAGAGCTTCAGTTTTGTAGTTGACAACTTTTTTGTACATATTGATTCAAGTGAGATATGCTGCTTCAAACCACGGTAAGTGGCAAAACTAGAACTTCCAGAACATTTGAATACTCACCAATTTTCAATCCAACCATATATGACGCTGGTATTCCTTCTGACATACTAATCAATGTGAAAGTGAACAGAGTCCAGGCAAGACGAGTTCTTGCAGACTTGAAAATTGAAGTTTCCGATGCAAAGCTTCCAACCTGAAAAGTTACAAAAGTTACTGTAAACACTCTAATAGAAGGTCACTCAACCCTTCAACTTTGAGCCCATATATCTCAATTCCTGTRAAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTCGCGGTATCTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATTTTCAATGATGACGAATCTCTCATTGACTAATGCACCAAATGCTTTTAACGAAAAGGTGCTTCGAAATTTCAAGTTCAATGAGGATTGCTGTACTTTTACGAGCTACATTAAGGGATTGTCTTCTTCGTTTTTCGGTTGGATTTCGAAATTGGAAATTTTAGGGACCAGAAAAATTCAAAAACTCACACTTTCCGCTCGATTCTTATAGCAATACAATGCGATCAGCACAAATGACAAGGTGATGATTGGAATGAGGAATGATAACGAAACTATGACAACTGGAAATAGGATTTTTCGGGGAGCCCTTGTTCTGCCAAACTCGAATTTTTATGAGTTTTTAAAAACTAACAAAAATGAACCAAGTTATGAATATTTTTCCGAAAAGTCGAGGATCAGAGAAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>162 147 131 127 97 68 60 42 40 35 24 20 16 14 9 6 2</canonical_bands>
                <polymorphic_bands>173 162 147 127 97 68 60 40 35 24 20 16 14 9 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGACGAGTTCTTGCAGACTT</pcr_primer_p1>
		<pcr_primer_p2>CATCATTGAAAATTTTGATCTCT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AAGACGAGTTCTTGCAGACTTGAAAATTGAAGTTTCCGATGCAAAGCTTCCAACCTGAAAAGTTACAAAAGTTACTGTAAACACTCTAATAGAAGGTCACTCAACCCTTCAACTTTGAGCCCATATATCTCAATTCCTGTGAAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTCGCGGTATCTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATTTTCAATGATG</canonical_amplicon>
		<polymorphic_amplicon>AAGACGAGTTCTTGCAGACTTGAAAATTGAAGTTTCCGATGCAAAGCTTCCAACCTGAAAAGTTACAAAAGTTACTGTAAACACTCTAATAGAAGGTCACTCAACCCTTCAACTTTGAGCCCATATATCTCAATTCCTGTRAAAGATATCGAAAACTTGTCAATTAATAAATTTTTCTTCTATTTTTCGCGGTATCTCCAAATTTAAAAGATTTACATAAAAATCAGAGATCAAAATTTTCAATGATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39376</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>57243</contig_pos>
        <strand>+</strand>
        <context>GAAAACAGTT[A/C]TTTTTTGAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAAGAAGAAAAAGAAAATTTGACATATTTATTTTGAATGAGAAAACAGTT</left_flank>
        <right_flank>TTTTTTGAGTTGATCATTTTGATTGAGCAGTTCGTTCATCTTCGACCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTCGGACTTTCCAGAAGATTTACAATTCAATGTTTTTAATTCTTTCCTTATACTCGAAAAATGAATTTTAAATTGAAAAATCTTACTTATTCGGTGCAACTGCGGCTTTATACGGTTCCCATGGAACAATCCGTGTCTTTTTCTTCTTTCCATTACTATCCGGACTTGAACTTTCTGATGATTTTCGGTCCTCGGCTTCTTCTGATTTTTTATTATTGGTAAAGTGAACCTCATAGCTTTCTTCTGTAGCCAATGATAAGTCATGAGCATGGTATAAATCTAACAGGTCCATTTATTATTTAGTACATCAATGAATATGGAGAAAAAAGAAAGGGAAAAGGAGGTCGAGTCAATAAAAGGAAGGACTGGTGGCCGGGTAAAAGGAAGAAGACCGGCGCCTTCTCGGCCACCGACCTTCTTCTCTTATCGCAAAGAAAATAAGAAGAAGAAGAAGAAAAAGAAAATTTGACATATTTATTTTGAATGAGAAAACAGTTCTTTTTTGAGTTGATCATTTTGATTGAGCAGTTCGTTCATCTTCGACCAATTCAGATCCGTAACGCAAAACGAAAGCCTGAAAAAAAAGAAATAAAAATACTTATTGATTTTTCTATTCACCTTCACTTGTTCAGCCAGATTCTGCGCCGCAACGTCTACAGCGACATTCTTTGGAGCTTTCAATGCCAACTTGATTTCGCTGAAAACAGTGAACGACCTCAAAAACCAAAAATCCAAATATCTTACTATTGTCCCTGCTCCTTAACCTTATTTAGTGTCATCTGTGAAGACGTCGGCGCGGGTGGAACTTTTACGTTTTGCTTCACCGCCAACAATGATCCTCGATTCTTTCTCTCCTTTTTCGACCCGCTATTCGGTGCAAAACCGCCCGTCTCACACAACTTCTGAAGTGCTCCATGTCGTCTCCACGGGTTATTCGTGCTTCTCGAGCCTTGCTTTTTGAACGTCGGAAGTTCTCCGTTTTGAATGAATTCTGTGAC</canonical>
            <polymorphic>AAGTCGGACTTTCCAGAAGATTTACAATTCAATGTTTTTAATTCTTTCCTTATACTCGAAAAATGAATTTTAAATTGAAAAATCTTACTTATTCGGTGCAACTGCGGCTTTATACGGTTCCCATGGAACAATCCGTGTCTTTTTCTTCTTTCCATTACTATCCGGACTTGAACTTTCTGATGATTTTCGGTCCTCGGCTTCTTCTGATTTTTTATTATTGGTAAAGTGAACCTCATAGCTTTCTTCTGTAGCCAATGATAAGTCATGAGCATGGTATAAATCTAACAGGTCCATTTATTATTTAGTACATCAATGAATATGGAGAAAAAAGAAAGGGAAAAGGAGGTCGAGTCAATAAAAGGAAGGACTGGTGGCCGGGTAAAAGGAAGAAGACCGGCGCCTTCTCGGCCACCGACCTTCTTCTCTTATCGCAAAGAAAATAAGAAGAAGAAGAAGAAAAAGAAAATTTGACATATTTATTTTGAATGAGAAAACAGTTMTTTTTTGAGTTGATCATTTTGATTGAGCAGTTCGTTCATCTTCGACCAATTCAGATCCGTAACGCAAAACGAAAGCCTGAAAAAAAAGAAATAAAAATACTTATTGATTTTTCTATTCACCTTCACTTGTTCAGCCAGATTCTGCGCCGCAACGTCTACAGCGACATTCTTTGGAGCTTTCAATGCCAACTTGATTTCGCTGAAAACAGTGAACGACCTCAAAAACCAAAAATCCAAATATCTTACTATTGTCCCTGCTCCTTAACCTTATTTAGTGTCATCTGTGAAGACGTCGGCGCGGGTGGAACTTTTACGTTTTGCTTCACCGCCAACAATGATCCTCGATTCTTTCTCTCCTTTTTCGACCCGCTATTCGGTGCAAAACCGCCCGTCTCACACAACTTCTGAAGTGCTCCATGTCGTCTCCACGGGTTATTCGTGCTTCTCGAGCCTTGCTTTTTGAACGTCGGAAGTTCTCCGTTTTGAATGAATTCTGTGAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACCGACCTTCTTCTCTTATC</pcr_primer_p1>
		<pcr_primer_p2>GAACAAGTGAAGGTGAATAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>CACCGACCTTCTTCTCTTATCGCAAAGAAAATAAGAAGAAGAAGAAGAAAAAGAAAATTTGACATATTTATTTTGAATGAGAAAACAGTTCTTTTTTGAGTTGATCATTTTGATTGAGCAGTTCGTTCATCTTCGACCAATTCAGATCCGTAACGCAAAACGAAAGCCTGAAAAAAAAGAAATAAAAATACTTATTGATTTTTCTATTCACCTTCACTTGTTC</canonical_amplicon>
		<polymorphic_amplicon>CACCGACCTTCTTCTCTTATCGCAAAGAAAATAAGAAGAAGAAGAAGAAAAAGAAAATTTGACATATTTATTTTGAATGAGAAAACAGTTMTTTTTTGAGTTGATCATTTTGATTGAGCAGTTCGTTCATCTTCGACCAATTCAGATCCGTAACGCAAAACGAAAGCCTGAAAAAAAAGAAATAAAAATACTTATTGATTTTTCTATTCACCTTCACTTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39377</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>57255</contig_pos>
        <strand></strand>
        <context>TTTTTGAGTT[G/T]KTCATTTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAAATTTGACATATTTATTTTGAATGAGAAAACAGTTCTTTTTTGAGTT</left_flank>
        <right_flank>ATCATTTTGATTGAGCAGTTCGTTCATCTTCGACCAATTCAGATCCGTAA</right_flank>
        <qual_score>34</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAGAAGATTTACAATTCAATGTTTTTAATTCTTTCCTTATACTCGAAAAATGAATTTTAAATTGAAAAATCTTACTTATTCGGTGCAACTGCGGCTTTATACGGTTCCCATGGAACAATCCGTGTCTTTTTCTTCTTTCCATTACTATCCGGACTTGAACTTTCTGATGATTTTCGGTCCTCGGCTTCTTCTGATTTTTTATTATTGGTAAAGTGAACCTCATAGCTTTCTTCTGTAGCCAATGATAAGTCATGAGCATGGTATAAATCTAACAGGTCCATTTATTATTTAGTACATCAATGAATATGGAGAAAAAAGAAAGGGAAAAGGAGGTCGAGTCAATAAAAGGAAGGACTGGTGGCCGGGTAAAAGGAAGAAGACCGGCGCCTTCTCGGCCACCGACCTTCTTCTCTTATCGCAAAGAAAATAAGAAGAAGAAGAAGAAAAAGAAAATTTGACATATTTATTTTGAATGAGAAAACAGTTCTTTTTTGAGTTGATCATTTTGATTGAGCAGTTCGTTCATCTTCGACCAATTCAGATCCGTAACGCAAAACGAAAGCCTGAAAAAAAAGAAATAAAAATACTTATTGATTTTTCTATTCACCTTCACTTGTTCAGCCAGATTCTGCGCCGCAACGTCTACAGCGACATTCTTTGGAGCTTTCAATGCCAACTTGATTTCGCTGAAAACAGTGAACGACCTCAAAAACCAAAAATCCAAATATCTTACTATTGTCCCTGCTCCTTAACCTTATTTAGTGTCATCTGTGAAGACGTCGGCGCGGGTGGAACTTTTACGTTTTGCTTCACCGCCAACAATGATCCTCGATTCTTTCTCTCCTTTTTCGACCCGCTATTCGGTGCAAAACCGCCCGTCTCACACAACTTCTGAAGTGCTCCATGTCGTCTCCACGGGTTATTCGTGCTTCTCGAGCCTTGCTTTTTGAACGTCGGAAGTTCTCCGTTTTGAATGAATTCTGTGACTTGTTGAGTCGA</canonical>
            <polymorphic>CCAGAAGATTTACAATTCAATGTTTTTAATTCTTTCCTTATACTCGAAAAATGAATTTTAAATTGAAAAATCTTACTTATTCGGTGCAACTGCGGCTTTATACGGTTCCCATGGAACAATCCGTGTCTTTTTCTTCTTTCCATTACTATCCGGACTTGAACTTTCTGATGATTTTCGGTCCTCGGCTTCTTCTGATTTTTTATTATTGGTAAAGTGAACCTCATAGCTTTCTTCTGTAGCCAATGATAAGTCATGAGCATGGTATAAATCTAACAGGTCCATTTATTATTTAGTACATCAATGAATATGGAGAAAAAAGAAAGGGAAAAGGAGGTCGAGTCAATAAAAGGAAGGACTGGTGGCCGGGTAAAAGGAAGAAGACCGGCGCCTTCTCGGCCACCGACCTTCTTCTCTTATCGCAAAGAAAATAAGAAGAAGAAGAAGAAAAAGAAAATTTGACATATTTATTTTGAATGAGAAAACAGTTCTTTTTTGAGTTKATCATTTTGATTGAGCAGTTCGTTCATCTTCGACCAATTCAGATCCGTAACGCAAAACGAAAGCCTGAAAAAAAAGAAATAAAAATACTTATTGATTTTTCTATTCACCTTCACTTGTTCAGCCAGATTCTGCGCCGCAACGTCTACAGCGACATTCTTTGGAGCTTTCAATGCCAACTTGATTTCGCTGAAAACAGTGAACGACCTCAAAAACCAAAAATCCAAATATCTTACTATTGTCCCTGCTCCTTAACCTTATTTAGTGTCATCTGTGAAGACGTCGGCGCGGGTGGAACTTTTACGTTTTGCTTCACCGCCAACAATGATCCTCGATTCTTTCTCTCCTTTTTCGACCCGCTATTCGGTGCAAAACCGCCCGTCTCACACAACTTCTGAAGTGCTCCATGTCGTCTCCACGGGTTATTCGTGCTTCTCGAGCCTTGCTTTTTGAACGTCGGAAGTTCTCCGTTTTGAATGAATTCTGTGACTTGTTGAGTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>499 283 176 42</canonical_bands>
                <polymorphic_bands>541 283 176</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACCGACCTTCTTCTCTTATC</pcr_primer_p1>
		<pcr_primer_p2>GAACAAGTGAAGGTGAATAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>CACCGACCTTCTTCTCTTATCGCAAAGAAAATAAGAAGAAGAAGAAGAAAAAGAAAATTTGACATATTTATTTTGAATGAGAAAACAGTTCTTTTTTGAGTTGATCATTTTGATTGAGCAGTTCGTTCATCTTCGACCAATTCAGATCCGTAACGCAAAACGAAAGCCTGAAAAAAAAGAAATAAAAATACTTATTGATTTTTCTATTCACCTTCACTTGTTC</canonical_amplicon>
		<polymorphic_amplicon>CACCGACCTTCTTCTCTTATCGCAAAGAAAATAAGAAGAAGAAGAAGAAAAAGAAAATTTGACATATTTATTTTGAATGAGAAAACAGTTCTTTTTTGAGTTKATCATTTTGATTGAGCAGTTCGTTCATCTTCGACCAATTCAGATCCGTAACGCAAAACGAAAGCCTGAAAAAAAAGAAATAAAAATACTTATTGATTTTTCTATTCACCTTCACTTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39378</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>57256</contig_pos>
        <strand>+</strand>
        <context>TTTTGAGTTK[G/T]TCATTTTGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAATTTGACATATTTATTTTGAATGAGAAAACAGTTCTTTTTTGAGTTG</left_flank>
        <right_flank>TCATTTTGATTGAGCAGTTCGTTCATCTTCGACCAATTCAGATCCGTAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAAGATTTACAATTCAATGTTTTTAATTCTTTCCTTATACTCGAAAAATGAATTTTAAATTGAAAAATCTTACTTATTCGGTGCAACTGCGGCTTTATACGGTTCCCATGGAACAATCCGTGTCTTTTTCTTCTTTCCATTACTATCCGGACTTGAACTTTCTGATGATTTTCGGTCCTCGGCTTCTTCTGATTTTTTATTATTGGTAAAGTGAACCTCATAGCTTTCTTCTGTAGCCAATGATAAGTCATGAGCATGGTATAAATCTAACAGGTCCATTTATTATTTAGTACATCAATGAATATGGAGAAAAAAGAAAGGGAAAAGGAGGTCGAGTCAATAAAAGGAAGGACTGGTGGCCGGGTAAAAGGAAGAAGACCGGCGCCTTCTCGGCCACCGACCTTCTTCTCTTATCGCAAAGAAAATAAGAAGAAGAAGAAGAAAAAGAAAATTTGACATATTTATTTTGAATGAGAAAACAGTTCTTTTTTGAGTTGATCATTTTGATTGAGCAGTTCGTTCATCTTCGACCAATTCAGATCCGTAACGCAAAACGAAAGCCTGAAAAAAAAGAAATAAAAATACTTATTGATTTTTCTATTCACCTTCACTTGTTCAGCCAGATTCTGCGCCGCAACGTCTACAGCGACATTCTTTGGAGCTTTCAATGCCAACTTGATTTCGCTGAAAACAGTGAACGACCTCAAAAACCAAAAATCCAAATATCTTACTATTGTCCCTGCTCCTTAACCTTATTTAGTGTCATCTGTGAAGACGTCGGCGCGGGTGGAACTTTTACGTTTTGCTTCACCGCCAACAATGATCCTCGATTCTTTCTCTCCTTTTTCGACCCGCTATTCGGTGCAAAACCGCCCGTCTCACACAACTTCTGAAGTGCTCCATGTCGTCTCCACGGGTTATTCGTGCTTCTCGAGCCTTGCTTTTTGAACGTCGGAAGTTCTCCGTTTTGAATGAATTCTGTGACTTGTTGAGTCGAT</canonical>
            <polymorphic>CAGAAGATTTACAATTCAATGTTTTTAATTCTTTCCTTATACTCGAAAAATGAATTTTAAATTGAAAAATCTTACTTATTCGGTGCAACTGCGGCTTTATACGGTTCCCATGGAACAATCCGTGTCTTTTTCTTCTTTCCATTACTATCCGGACTTGAACTTTCTGATGATTTTCGGTCCTCGGCTTCTTCTGATTTTTTATTATTGGTAAAGTGAACCTCATAGCTTTCTTCTGTAGCCAATGATAAGTCATGAGCATGGTATAAATCTAACAGGTCCATTTATTATTTAGTACATCAATGAATATGGAGAAAAAAGAAAGGGAAAAGGAGGTCGAGTCAATAAAAGGAAGGACTGGTGGCCGGGTAAAAGGAAGAAGACCGGCGCCTTCTCGGCCACCGACCTTCTTCTCTTATCGCAAAGAAAATAAGAAGAAGAAGAAGAAAAAGAAAATTTGACATATTTATTTTGAATGAGAAAACAGTTCTTTTTTGAGTTGKTCATTTTGATTGAGCAGTTCGTTCATCTTCGACCAATTCAGATCCGTAACGCAAAACGAAAGCCTGAAAAAAAAGAAATAAAAATACTTATTGATTTTTCTATTCACCTTCACTTGTTCAGCCAGATTCTGCGCCGCAACGTCTACAGCGACATTCTTTGGAGCTTTCAATGCCAACTTGATTTCGCTGAAAACAGTGAACGACCTCAAAAACCAAAAATCCAAATATCTTACTATTGTCCCTGCTCCTTAACCTTATTTAGTGTCATCTGTGAAGACGTCGGCGCGGGTGGAACTTTTACGTTTTGCTTCACCGCCAACAATGATCCTCGATTCTTTCTCTCCTTTTTCGACCCGCTATTCGGTGCAAAACCGCCCGTCTCACACAACTTCTGAAGTGCTCCATGTCGTCTCCACGGGTTATTCGTGCTTCTCGAGCCTTGCTTTTTGAACGTCGGAAGTTCTCCGTTTTGAATGAATTCTGTGACTTGTTGAGTCGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGATCA</site>
                <isoschizomers>
                    <enzyme>BclI</enzyme>
                    <enzyme>BsiQI</enzyme>
                    <enzyme>FbaI</enzyme>
                    <enzyme>Ksp22I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>498 283 177 42</canonical_bands>
                <polymorphic_bands>540 283 177</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CACCGACCTTCTTCTCTTATC</pcr_primer_p1>
		<pcr_primer_p2>GAACAAGTGAAGGTGAATAGAAA</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>CACCGACCTTCTTCTCTTATCGCAAAGAAAATAAGAAGAAGAAGAAGAAAAAGAAAATTTGACATATTTATTTTGAATGAGAAAACAGTTCTTTTTTGAGTTGATCATTTTGATTGAGCAGTTCGTTCATCTTCGACCAATTCAGATCCGTAACGCAAAACGAAAGCCTGAAAAAAAAGAAATAAAAATACTTATTGATTTTTCTATTCACCTTCACTTGTTC</canonical_amplicon>
		<polymorphic_amplicon>CACCGACCTTCTTCTCTTATCGCAAAGAAAATAAGAAGAAGAAGAAGAAAAAGAAAATTTGACATATTTATTTTGAATGAGAAAACAGTTCTTTTTTGAGTTGKTCATTTTGATTGAGCAGTTCGTTCATCTTCGACCAATTCAGATCCGTAACGCAAAACGAAAGCCTGAAAAAAAAGAAATAAAAATACTTATTGATTTTTCTATTCACCTTCACTTGTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39379</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>59679</contig_pos>
        <strand>+</strand>
        <context>TCTGTCAGAR[A/G]TATCGACTAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTCAGGTGTCACCAAATCGCACATCGTCAATCCAACTTTCTGTCAGAA</left_flank>
        <right_flank>TATCGACTATGAATGCTTTCCTGAACACAATATTTTCGATTTTTTCATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATTTGCTTCTTTCTATTTGCCATTTCTTGTTTCAACTCTTCTGGTGATGCCAACACTTCTTCTGTCAGATGTTCGACTGTTTTCTTCGCTGTCATTATTTCTCTTTCTATCTCTTCTATTTGCTGAATCAATTCTGTTTTCTGCTTCTCAATATCTTCTGTTCTCTCCACAACATCTGTGTACTGATTGACAACGCCAGCCAATTCACTTTTACATTTACTATGCTCGTTCATCAGCTCGTTCTCTCGACGCTTCCGCAAACTTTGTTTCGAAATCAAGTCATTTTTGCGTTTCTCCGCCTGAATGATCTCATCCTGCATGCGCTCCATCTCTTGCTTCTGCTCGCTGAATTCGTCACTGATTTCGTTGAACATTGGAGCAGACATCTCGTGAAGTTTGATGAAATCGACTAGGAAACTCGTGAGTCTTCTGAATCGATTCGGTTGTTTTTCAGGTGTCACCAAATCGCACATCGTCAATCCAACTTTCTGTCAGAATTATCGACTATGAATGCTTTCCTGAACACAATATTTTCGATTTTTTCATGAAATTTCATGAAATTAATCAGCTTACATGCACTGATATATGATTACAAGTGGAATAGTCTTTTTGTGCAGTTCTGGATCATGACCACTGTCTGCCGACAACGGGAGCGTTAACAAGCTCTGCTCGGAGACGTTGAGGATGTAGCGGATGAAGTTGGAGAAAATTGATTGTGCGACTTCAGCCTGAAAATTAAGAATCTTAAAATGAAATGGAAGGAAGAACTTACATCTGGATTTAAAATGCTGTCAGCTGTTAGTCCGAGTCCCAGCTTTTGTTGCAGAACTTTGGCGATCAACCGAGTGTCATACTGGATTAGTATGACGGATTTAGCGTTCGACATATTTATTAAAGTGTTAAACACTCATAAAAGAGCGAATTCGGTGATAAAACGTGGGGAAAGGCTCCGAAAATGATGGCTGACTCGAACGAGTTACTTGGCCTGTTTTGAATTC</canonical>
            <polymorphic>CGATTTGCTTCTTTCTATTTGCCATTTCTTGTTTCAACTCTTCTGGTGATGCCAACACTTCTTCTGTCAGATGTTCGACTGTTTTCTTCGCTGTCATTATTTCTCTTTCTATCTCTTCTATTTGCTGAATCAATTCTGTTTTCTGCTTCTCAATATCTTCTGTTCTCTCCACAACATCTGTGTACTGATTGACAACGCCAGCCAATTCACTTTTACATTTACTATGCTCGTTCATCAGCTCGTTCTCTCGACGCTTCCGCAAACTTTGTTTCGAAATCAAGTCATTTTTGCGTTTCTCCGCCTGAATGATCTCATCCTGCATGCGCTCCATCTCTTGCTTCTGCTCGCTGAATTCGTCACTGATTTCGTTGAACATTGGAGCAGACATCTCGTGAAGTTTGATGAAATCGACTAGGAAACTCGTGAGTCTTCTGAATCGATTCGGTTGTTTTTCAGGTGTCACCAAATCGCACATCGTCAATCCAACTTTCTGTCAGAARTATCGACTATGAATGCTTTCCTGAACACAATATTTTCGATTTTTTCATGAAATTTCATGAAATTAATCAGCTTACATGCACTGATATATGATTACAAGTGGAATAGTCTTTTTGTGCAGTTCTGGATCATGACCACTGTCTGCCGACAACGGGAGCGTTAACAAGCTCTGCTCGGAGACGTTGAGGATGTAGCGGATGAAGTTGGAGAAAATTGATTGTGCGACTTCAGCCTGAAAATTAAGAATCTTAAAATGAAATGGAAGGAAGAACTTACATCTGGATTTAAAATGCTGTCAGCTGTTAGTCCGAGTCCCAGCTTTTGTTGCAGAACTTTGGCGATCAACCGAGTGTCATACTGGATTAGTATGACGGATTTAGCGTTCGACATATTTATTAAAGTGTTAAACACTCATAAAAGAGCGAATTCGGTGATAAAACGTGGGGAAAGGCTCCGAAAATGATGGCTGACTCGAACGAGTTACTTGGCCTGTTTTGAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>187 149 147 147 131 73 72 53 26 10 5</canonical_bands>
                <polymorphic_bands>200 187 149 147 131 73 72 26 10 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGAAGTTTGATGAAATCGACTA</pcr_primer_p1>
		<pcr_primer_p2>ACAGTGGTCATGATCCAGAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTGAAGTTTGATGAAATCGACTAGGAAACTCGTGAGTCTTCTGAATCGATTCGGTTGTTTTTCAGGTGTCACCAAATCGCACATCGTCAATCCAACTTTCTGTCAGAATTATCGACTATGAATGCTTTCCTGAACACAATATTTTCGATTTTTTCATGAAATTTCATGAAATTAATCAGCTTACATGCACTGATATATGATTACAAGTGGAATAGTCTTTTTGTGCAGTTCTGGATCATGACCACTGT</canonical_amplicon>
		<polymorphic_amplicon>GTGAAGTTTGATGAAATCGACTAGGAAACTCGTGAGTCTTCTGAATCGATTCGGTTGTTTTTCAGGTGTCACCAAATCGCACATCGTCAATCCAACTTTCTGTCAGAARTATCGACTATGAATGCTTTCCTGAACACAATATTTTCGATTTTTTCATGAAATTTCATGAAATTAATCAGCTTACATGCACTGATATATGATTACAAGTGGAATAGTCTTTTTGTGCAGTTCTGGATCATGACCACTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39380</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>64656</contig_pos>
        <strand>+</strand>
        <context>AATTACCTTT[A/G]GAATCTACTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTGGACAGTAGCCATGGGATAGGTAGGCGTTGCCCTAGAAAATTACCTTT</left_flank>
        <right_flank>GAATCTACTAATTTTGAAAAAGAGAGGATACCTGAATTCCAAGAATTTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTGGTATCCCCAAATGAAGACATTAAAAAAAACTAACCTGAATCCGATCCTCTTGAAGTTCAGTCTTCCCAGCAAGCACTTCACGAGCATAGACATCCGGATAGTGAGCCTCTTGGAACGCCTTCTCGAGTTCATCAATTTGATATTGGGAGAAGATTGTGCGATGTCTTCGCTTCTTCCGTTTGCTAGCTTTTCCACCTCCAGAAGACGTGGAAGTAGCACAGGCTCCAGATGAAGATGTAGAAGTTGTGGAGCTCACTTGGGTTTGTGGCTCCACATTGAGCACGACGTCATTGGTAGAAGTAGGCATACGGTACATCAATGGAGCAGAACTTGCTGACACATTTCCAAGTCCATCGGTTCCACAGAGAGGTCTGCTGTCGAATCCGGAGACCCCGCAAGTGCTAATATCCATGAAATTCGGTTGGTTTGGGAAGAACGTTCCCTGTGGACAGTAGCCATGGGATAGGTAGGCGTTGCCCTAGAAAATTACCTTTGGAATCTACTAATTTTGAAAAAGAGAGGATACCTGAATTCCAAGAATTTCATGTATCGCAAAGCTCATTCTCTGCGAGTTGCTCATCTGATTGCTCATCTGCATTGATGCGGCCAACTGCATATCATCAACGGCCATGGTCATTTTTTAGTGGCCTATGGAAATAAGATAAAAAATTACCCAAAGTGGAAAATTGGTAGACACACGAAGGGGCCTTATTTGGAAAAAAGGAGAAGGAGGAGAGAAGACAAAATGATCCAATTTCCGACGAATGGAAACGAGCCACGCCCCTTTGGGATGACTCCTTGAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAAGACCTCCTACAGTAGTTAGGGGGCGGAGCTTGTTATAGCAGAATATTTGAAGTGTTTTGCAAATGGGAGAGGGGAAATTGGAAATTGATAATTAGAGAAAAACAGGAAGTTCGATATTTTCAGGAGAAAGTTTTCTGATTGTCAAGAAATGCGACGAGACGGC</canonical>
            <polymorphic>AATTGGTATCCCCAAATGAAGACATTAAAAAAAACTAACCTGAATCCGATCCTCTTGAAGTTCAGTCTTCCCAGCAAGCACTTCACGAGCATAGACATCCGGATAGTGAGCCTCTTGGAACGCCTTCTCGAGTTCATCAATTTGATATTGGGAGAAGATTGTGCGATGTCTTCGCTTCTTCCGTTTGCTAGCTTTTCCACCTCCAGAAGACGTGGAAGTAGCACAGGCTCCAGATGAAGATGTAGAAGTTGTGGAGCTCACTTGGGTTTGTGGCTCCACATTGAGCACGACGTCATTGGTAGAAGTAGGCATACGGTACATCAATGGAGCAGAACTTGCTGACACATTTCCAAGTCCATCGGTTCCACAGAGAGGTCTGCTGTCGAATCCGGAGACCCCGCAAGTGCTAATATCCATGAAATTCGGTTGGTTTGGGAAGAACGTTCCCTGTGGACAGTAGCCATGGGATAGGTAGGCGTTGCCCTAGAAAATTACCTTTRGAATCTACTAATTTTGAAAAAGAGAGGATACCTGAATTCCAAGAATTTCATGTATCGCAAAGCTCATTCTCTGCGAGTTGCTCATCTGATTGCTCATCTGCATTGATGCGGCCAACTGCATATCATCAACGGCCATGGTCATTTTTTAGTGGCCTATGGAAATAAGATAAAAAATTACCCAAAGTGGAAAATTGGTAGACACACGAAGGGGCCTTATTTGGAAAAAAGGAGAAGGAGGAGAGAAGACAAAATGATCCAATTTCCGACGAATGGAAACGAGCCACGCCCCTTTGGGATGACTCCTTGAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAAGACCTCCTACAGTAGTTAGGGGGCGGAGCTTGTTATAGCAGAATATTTGAAGTGTTTTGCAAATGGGAGAGGGGAAATTGGAAATTGATAATTAGAGAAAAACAGGAAGTTCGATATTTTCAGGAGAAAGTTTTCTGATTGTCAAGAAATGCGACGAGACGGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTACATCAATGGAGCAGAACTT</pcr_primer_p1>
		<pcr_primer_p2>AGCTTTGCGATACATGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTACATCAATGGAGCAGAACTTGCTGACACATTTCCAAGTCCATCGGTTCCACAGAGAGGTCTGCTGTCGAATCCGGAGACCCCGCAAGTGCTAATATCCATGAAATTCGGTTGGTTTGGGAAGAACGTTCCCTGTGGACAGTAGCCATGGGATAGGTAGGCGTTGCCCTAGAAAATTACCTTTGGAATCTACTAATTTTGAAAAAGAGAGGATACCTGAATTCCAAGAATTTCATGTATCGCAAAGCT</canonical_amplicon>
		<polymorphic_amplicon>GTACATCAATGGAGCAGAACTTGCTGACACATTTCCAAGTCCATCGGTTCCACAGAGAGGTCTGCTGTCGAATCCGGAGACCCCGCAAGTGCTAATATCCATGAAATTCGGTTGGTTTGGGAAGAACGTTCCCTGTGGACAGTAGCCATGGGATAGGTAGGCGTTGCCCTAGAAAATTACCTTTRGAATCTACTAATTTTGAAAAAGAGAGGATACCTGAATTCCAAGAATTTCATGTATCGCAAAGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39381</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>64876</contig_pos>
        <strand>+</strand>
        <context>GGCCTTATTT[A/G]RAAARAAGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAATTACCCAAAGTGGAAAATTGGTAGACACACGAAGGGGCCTTATTT</left_flank>
        <right_flank>GAAAAAAGGAGAAGGAGGAGAGAAGACAAAATGATCCAATTTCCGACGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCACAGGCTCCAGATGAAGATGTAGAAGTTGTGGAGCTCACTTGGGTTTGTGGCTCCACATTGAGCACGACGTCATTGGTAGAAGTAGGCATACGGTACATCAATGGAGCAGAACTTGCTGACACATTTCCAAGTCCATCGGTTCCACAGAGAGGTCTGCTGTCGAATCCGGAGACCCCGCAAGTGCTAATATCCATGAAATTCGGTTGGTTTGGGAAGAACGTTCCCTGTGGACAGTAGCCATGGGATAGGTAGGCGTTGCCCTAGAAAATTACCTTTGGAATCTACTAATTTTGAAAAAGAGAGGATACCTGAATTCCAAGAATTTCATGTATCGCAAAGCTCATTCTCTGCGAGTTGCTCATCTGATTGCTCATCTGCATTGATGCGGCCAACTGCATATCATCAACGGCCATGGTCATTTTTTAGTGGCCTATGGAAATAAGATAAAAAATTACCCAAAGTGGAAAATTGGTAGACACACGAAGGGGCCTTATTTGGAAAAAAGGAGAAGGAGGAGAGAAGACAAAATGATCCAATTTCCGACGAATGGAAACGAGCCACGCCCCTTTGGGATGACTCCTTGAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAAGACCTCCTACAGTAGTTAGGGGGCGGAGCTTGTTATAGCAGAATATTTGAAGTGTTTTGCAAATGGGAGAGGGGAAATTGGAAATTGATAATTAGAGAAAAACAGGAAGTTCGATATTTTCAGGAGAAAGTTTTCTGATTGTCAAGAAATGCGACGAGACGGCGGTTCACAAAATCCTGAATACCCCTATCGATCAATTGATCAAAGTGAGGAATCGGGAGACTGATCGAACCACATTGAGCAGATTCGTTTTGGAGGTAATTCGAATTTTATCAATTCTGAGCCCTCTAATAGAAGAGCCCACCAAACCGTCGACTTTGAGCTCAATTATCTCGATTCCTGGAAAAGATGTCTAAAAATTGTTGACTGATAAATTGTTTATC</canonical>
            <polymorphic>GCACAGGCTCCAGATGAAGATGTAGAAGTTGTGGAGCTCACTTGGGTTTGTGGCTCCACATTGAGCACGACGTCATTGGTAGAAGTAGGCATACGGTACATCAATGGAGCAGAACTTGCTGACACATTTCCAAGTCCATCGGTTCCACAGAGAGGTCTGCTGTCGAATCCGGAGACCCCGCAAGTGCTAATATCCATGAAATTCGGTTGGTTTGGGAAGAACGTTCCCTGTGGACAGTAGCCATGGGATAGGTAGGCGTTGCCCTAGAAAATTACCTTTGGAATCTACTAATTTTGAAAAAGAGAGGATACCTGAATTCCAAGAATTTCATGTATCGCAAAGCTCATTCTCTGCGAGTTGCTCATCTGATTGCTCATCTGCATTGATGCGGCCAACTGCATATCATCAACGGCCATGGTCATTTTTTAGTGGCCTATGGAAATAAGATAAAAAATTACCCAAAGTGGAAAATTGGTAGACACACGAAGGGGCCTTATTTRGAAAAAAGGAGAAGGAGGAGAGAAGACAAAATGATCCAATTTCCGACGAATGGAAACGAGCCACGCCCCTTTGGGATGACTCCTTGAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAAGACCTCCTACAGTAGTTAGGGGGCGGAGCTTGTTATAGCAGAATATTTGAAGTGTTTTGCAAATGGGAGAGGGGAAATTGGAAATTGATAATTAGAGAAAAACAGGAAGTTCGATATTTTCAGGAGAAAGTTTTCTGATTGTCAAGAAATGCGACGAGACGGCGGTTCACAAAATCCTGAATACCCCTATCGATCAATTGATCAAAGTGAGGAATCGGGAGACTGATCGAACCACATTGAGCAGATTCGTTTTGGAGGTAATTCGAATTTTATCAATTCTGAGCCCTCTAATAGAAGAGCCCACCAAACCGTCGACTTTGAGCTCAATTATCTCGATTCCTGGAAAAGATGTCTAAAAATTGTTGACTGATAAATTGTTTATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTGGCCTATGGAAATAAGATA</pcr_primer_p1>
		<pcr_primer_p2>CAAAACACTTCAAATATTCTGCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGTGGCCTATGGAAATAAGATAAAAAATTACCCAAAGTGGAAAATTGGTAGACACACGAAGGGGCCTTATTTGGAAAAAAGGAGAAGGAGGAGAGAAGACAAAATGATCCAATTTCCGACGAATGGAAACGAGCCACGCCCCTTTGGGATGACTCCTTGAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAAGACCTCCTACAGTAGTTAGGGGGCGGAGCTTGTTATAGCAGAATATTTGAAGTGTTTTG</canonical_amplicon>
		<polymorphic_amplicon>TAGTGGCCTATGGAAATAAGATAAAAAATTACCCAAAGTGGAAAATTGGTAGACACACGAAGGGGCCTTATTTRGAAAAAAGGAGAAGGAGGAGAGAAGACAAAATGATCCAATTTCCGACGAATGGAAACGAGCCACGCCCCTTTGGGATGACTCCTTGAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAAGACCTCCTACAGTAGTTAGGGGGCGGAGCTTGTTATAGCAGAATATTTGAAGTGTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39382</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>64877</contig_pos>
        <strand>+</strand>
        <context>GCCTTATTTR[A/G]AAARAAGGAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATTACCCAAAGTGGAAAATTGGTAGACACACGAAGGGGCCTTATTTG</left_flank>
        <right_flank>AAAAAAGGAGAAGGAGGAGAGAAGACAAAATGATCCAATTTCCGACGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACAGGCTCCAGATGAAGATGTAGAAGTTGTGGAGCTCACTTGGGTTTGTGGCTCCACATTGAGCACGACGTCATTGGTAGAAGTAGGCATACGGTACATCAATGGAGCAGAACTTGCTGACACATTTCCAAGTCCATCGGTTCCACAGAGAGGTCTGCTGTCGAATCCGGAGACCCCGCAAGTGCTAATATCCATGAAATTCGGTTGGTTTGGGAAGAACGTTCCCTGTGGACAGTAGCCATGGGATAGGTAGGCGTTGCCCTAGAAAATTACCTTTGGAATCTACTAATTTTGAAAAAGAGAGGATACCTGAATTCCAAGAATTTCATGTATCGCAAAGCTCATTCTCTGCGAGTTGCTCATCTGATTGCTCATCTGCATTGATGCGGCCAACTGCATATCATCAACGGCCATGGTCATTTTTTAGTGGCCTATGGAAATAAGATAAAAAATTACCCAAAGTGGAAAATTGGTAGACACACGAAGGGGCCTTATTTGGAAAAAAGGAGAAGGAGGAGAGAAGACAAAATGATCCAATTTCCGACGAATGGAAACGAGCCACGCCCCTTTGGGATGACTCCTTGAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAAGACCTCCTACAGTAGTTAGGGGGCGGAGCTTGTTATAGCAGAATATTTGAAGTGTTTTGCAAATGGGAGAGGGGAAATTGGAAATTGATAATTAGAGAAAAACAGGAAGTTCGATATTTTCAGGAGAAAGTTTTCTGATTGTCAAGAAATGCGACGAGACGGCGGTTCACAAAATCCTGAATACCCCTATCGATCAATTGATCAAAGTGAGGAATCGGGAGACTGATCGAACCACATTGAGCAGATTCGTTTTGGAGGTAATTCGAATTTTATCAATTCTGAGCCCTCTAATAGAAGAGCCCACCAAACCGTCGACTTTGAGCTCAATTATCTCGATTCCTGGAAAAGATGTCTAAAAATTGTTGACTGATAAATTGTTTATCA</canonical>
            <polymorphic>CACAGGCTCCAGATGAAGATGTAGAAGTTGTGGAGCTCACTTGGGTTTGTGGCTCCACATTGAGCACGACGTCATTGGTAGAAGTAGGCATACGGTACATCAATGGAGCAGAACTTGCTGACACATTTCCAAGTCCATCGGTTCCACAGAGAGGTCTGCTGTCGAATCCGGAGACCCCGCAAGTGCTAATATCCATGAAATTCGGTTGGTTTGGGAAGAACGTTCCCTGTGGACAGTAGCCATGGGATAGGTAGGCGTTGCCCTAGAAAATTACCTTTGGAATCTACTAATTTTGAAAAAGAGAGGATACCTGAATTCCAAGAATTTCATGTATCGCAAAGCTCATTCTCTGCGAGTTGCTCATCTGATTGCTCATCTGCATTGATGCGGCCAACTGCATATCATCAACGGCCATGGTCATTTTTTAGTGGCCTATGGAAATAAGATAAAAAATTACCCAAAGTGGAAAATTGGTAGACACACGAAGGGGCCTTATTTGRAAAAAAGGAGAAGGAGGAGAGAAGACAAAATGATCCAATTTCCGACGAATGGAAACGAGCCACGCCCCTTTGGGATGACTCCTTGAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAAGACCTCCTACAGTAGTTAGGGGGCGGAGCTTGTTATAGCAGAATATTTGAAGTGTTTTGCAAATGGGAGAGGGGAAATTGGAAATTGATAATTAGAGAAAAACAGGAAGTTCGATATTTTCAGGAGAAAGTTTTCTGATTGTCAAGAAATGCGACGAGACGGCGGTTCACAAAATCCTGAATACCCCTATCGATCAATTGATCAAAGTGAGGAATCGGGAGACTGATCGAACCACATTGAGCAGATTCGTTTTGGAGGTAATTCGAATTTTATCAATTCTGAGCCCTCTAATAGAAGAGCCCACCAAACCGTCGACTTTGAGCTCAATTATCTCGATTCCTGGAAAAGATGTCTAAAAATTGTTGACTGATAAATTGTTTATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTGGCCTATGGAAATAAGATA</pcr_primer_p1>
		<pcr_primer_p2>CAAAACACTTCAAATATTCTGCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGTGGCCTATGGAAATAAGATAAAAAATTACCCAAAGTGGAAAATTGGTAGACACACGAAGGGGCCTTATTTGGAAAAAAGGAGAAGGAGGAGAGAAGACAAAATGATCCAATTTCCGACGAATGGAAACGAGCCACGCCCCTTTGGGATGACTCCTTGAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAAGACCTCCTACAGTAGTTAGGGGGCGGAGCTTGTTATAGCAGAATATTTGAAGTGTTTTG</canonical_amplicon>
		<polymorphic_amplicon>TAGTGGCCTATGGAAATAAGATAAAAAATTACCCAAAGTGGAAAATTGGTAGACACACGAAGGGGCCTTATTTGRAAAAAAGGAGAAGGAGGAGAGAAGACAAAATGATCCAATTTCCGACGAATGGAAACGAGCCACGCCCCTTTGGGATGACTCCTTGAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAAGACCTCCTACAGTAGTTAGGGGGCGGAGCTTGTTATAGCAGAATATTTGAAGTGTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39383</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>64881</contig_pos>
        <strand>+</strand>
        <context>TATTTRRAAA[A/G]AAGGAGAAGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTACCCAAAGTGGAAAATTGGTAGACACACGAAGGGGCCTTATTTGGAAA</left_flank>
        <right_flank>AAGGAGAAGGAGGAGAGAAGACAAAATGATCCAATTTCCGACGAATGGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTCCAGATGAAGATGTAGAAGTTGTGGAGCTCACTTGGGTTTGTGGCTCCACATTGAGCACGACGTCATTGGTAGAAGTAGGCATACGGTACATCAATGGAGCAGAACTTGCTGACACATTTCCAAGTCCATCGGTTCCACAGAGAGGTCTGCTGTCGAATCCGGAGACCCCGCAAGTGCTAATATCCATGAAATTCGGTTGGTTTGGGAAGAACGTTCCCTGTGGACAGTAGCCATGGGATAGGTAGGCGTTGCCCTAGAAAATTACCTTTGGAATCTACTAATTTTGAAAAAGAGAGGATACCTGAATTCCAAGAATTTCATGTATCGCAAAGCTCATTCTCTGCGAGTTGCTCATCTGATTGCTCATCTGCATTGATGCGGCCAACTGCATATCATCAACGGCCATGGTCATTTTTTAGTGGCCTATGGAAATAAGATAAAAAATTACCCAAAGTGGAAAATTGGTAGACACACGAAGGGGCCTTATTTGGAAAAAAGGAGAAGGAGGAGAGAAGACAAAATGATCCAATTTCCGACGAATGGAAACGAGCCACGCCCCTTTGGGATGACTCCTTGAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAAGACCTCCTACAGTAGTTAGGGGGCGGAGCTTGTTATAGCAGAATATTTGAAGTGTTTTGCAAATGGGAGAGGGGAAATTGGAAATTGATAATTAGAGAAAAACAGGAAGTTCGATATTTTCAGGAGAAAGTTTTCTGATTGTCAAGAAATGCGACGAGACGGCGGTTCACAAAATCCTGAATACCCCTATCGATCAATTGATCAAAGTGAGGAATCGGGAGACTGATCGAACCACATTGAGCAGATTCGTTTTGGAGGTAATTCGAATTTTATCAATTCTGAGCCCTCTAATAGAAGAGCCCACCAAACCGTCGACTTTGAGCTCAATTATCTCGATTCCTGGAAAAGATGTCTAAAAATTGTTGACTGATAAATTGTTTATCATATT</canonical>
            <polymorphic>GGCTCCAGATGAAGATGTAGAAGTTGTGGAGCTCACTTGGGTTTGTGGCTCCACATTGAGCACGACGTCATTGGTAGAAGTAGGCATACGGTACATCAATGGAGCAGAACTTGCTGACACATTTCCAAGTCCATCGGTTCCACAGAGAGGTCTGCTGTCGAATCCGGAGACCCCGCAAGTGCTAATATCCATGAAATTCGGTTGGTTTGGGAAGAACGTTCCCTGTGGACAGTAGCCATGGGATAGGTAGGCGTTGCCCTAGAAAATTACCTTTGGAATCTACTAATTTTGAAAAAGAGAGGATACCTGAATTCCAAGAATTTCATGTATCGCAAAGCTCATTCTCTGCGAGTTGCTCATCTGATTGCTCATCTGCATTGATGCGGCCAACTGCATATCATCAACGGCCATGGTCATTTTTTAGTGGCCTATGGAAATAAGATAAAAAATTACCCAAAGTGGAAAATTGGTAGACACACGAAGGGGCCTTATTTGGAAARAAGGAGAAGGAGGAGAGAAGACAAAATGATCCAATTTCCGACGAATGGAAACGAGCCACGCCCCTTTGGGATGACTCCTTGAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAAGACCTCCTACAGTAGTTAGGGGGCGGAGCTTGTTATAGCAGAATATTTGAAGTGTTTTGCAAATGGGAGAGGGGAAATTGGAAATTGATAATTAGAGAAAAACAGGAAGTTCGATATTTTCAGGAGAAAGTTTTCTGATTGTCAAGAAATGCGACGAGACGGCGGTTCACAAAATCCTGAATACCCCTATCGATCAATTGATCAAAGTGAGGAATCGGGAGACTGATCGAACCACATTGAGCAGATTCGTTTTGGAGGTAATTCGAATTTTATCAATTCTGAGCCCTCTAATAGAAGAGCCCACCAAACCGTCGACTTTGAGCTCAATTATCTCGATTCCTGGAAAAGATGTCTAAAAATTGTTGACTGATAAATTGTTTATCATATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTGGCCTATGGAAATAAGATA</pcr_primer_p1>
		<pcr_primer_p2>CAAAACACTTCAAATATTCTGCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGTGGCCTATGGAAATAAGATAAAAAATTACCCAAAGTGGAAAATTGGTAGACACACGAAGGGGCCTTATTTGGAAAAAAGGAGAAGGAGGAGAGAAGACAAAATGATCCAATTTCCGACGAATGGAAACGAGCCACGCCCCTTTGGGATGACTCCTTGAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAAGACCTCCTACAGTAGTTAGGGGGCGGAGCTTGTTATAGCAGAATATTTGAAGTGTTTTG</canonical_amplicon>
		<polymorphic_amplicon>TAGTGGCCTATGGAAATAAGATAAAAAATTACCCAAAGTGGAAAATTGGTAGACACACGAAGGGGCCTTATTTGGAAARAAGGAGAAGGAGGAGAGAAGACAAAATGATCCAATTTCCGACGAATGGAAACGAGCCACGCCCCTTTGGGATGACTCCTTGAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAAGACCTCCTACAGTAGTTAGGGGGCGGAGCTTGTTATAGCAGAATATTTGAAGTGTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39384</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>64933</contig_pos>
        <strand>+</strand>
        <context>CGAATGGAAA[A/C]GAGCCACGCC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGGAGAAGGAGGAGAGAAGACAAAATGATCCAATTTCCGACGAATGGAAA</left_flank>
        <right_flank>GAGCCACGCCCCTTTGGGATGACTCCTTGAGAAGAGGAAGAAGAAGAGGA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATTGAGCACGACGTCATTGGTAGAAGTAGGCATACGGTACATCAATGGAGCAGAACTTGCTGACACATTTCCAAGTCCATCGGTTCCACAGAGAGGTCTGCTGTCGAATCCGGAGACCCCGCAAGTGCTAATATCCATGAAATTCGGTTGGTTTGGGAAGAACGTTCCCTGTGGACAGTAGCCATGGGATAGGTAGGCGTTGCCCTAGAAAATTACCTTTGGAATCTACTAATTTTGAAAAAGAGAGGATACCTGAATTCCAAGAATTTCATGTATCGCAAAGCTCATTCTCTGCGAGTTGCTCATCTGATTGCTCATCTGCATTGATGCGGCCAACTGCATATCATCAACGGCCATGGTCATTTTTTAGTGGCCTATGGAAATAAGATAAAAAATTACCCAAAGTGGAAAATTGGTAGACACACGAAGGGGCCTTATTTGGAAAAAAGGAGAAGGAGGAGAGAAGACAAAATGATCCAATTTCCGACGAATGGAAACGAGCCACGCCCCTTTGGGATGACTCCTTGAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAAGACCTCCTACAGTAGTTAGGGGGCGGAGCTTGTTATAGCAGAATATTTGAAGTGTTTTGCAAATGGGAGAGGGGAAATTGGAAATTGATAATTAGAGAAAAACAGGAAGTTCGATATTTTCAGGAGAAAGTTTTCTGATTGTCAAGAAATGCGACGAGACGGCGGTTCACAAAATCCTGAATACCCCTATCGATCAATTGATCAAAGTGAGGAATCGGGAGACTGATCGAACCACATTGAGCAGATTCGTTTTGGAGGTAATTCGAATTTTATCAATTCTGAGCCCTCTAATAGAAGAGCCCACCAAACCGTCGACTTTGAGCTCAATTATCTCGATTCCTGGAAAAGATGTCTAAAAATTGTTGACTGATAAATTGTTTATCATATTATCACGGATATTTTATCAGTTGATACATTTTTGATATCTTGTAAAGGAGCCG</canonical>
            <polymorphic>ACATTGAGCACGACGTCATTGGTAGAAGTAGGCATACGGTACATCAATGGAGCAGAACTTGCTGACACATTTCCAAGTCCATCGGTTCCACAGAGAGGTCTGCTGTCGAATCCGGAGACCCCGCAAGTGCTAATATCCATGAAATTCGGTTGGTTTGGGAAGAACGTTCCCTGTGGACAGTAGCCATGGGATAGGTAGGCGTTGCCCTAGAAAATTACCTTTGGAATCTACTAATTTTGAAAAAGAGAGGATACCTGAATTCCAAGAATTTCATGTATCGCAAAGCTCATTCTCTGCGAGTTGCTCATCTGATTGCTCATCTGCATTGATGCGGCCAACTGCATATCATCAACGGCCATGGTCATTTTTTAGTGGCCTATGGAAATAAGATAAAAAATTACCCAAAGTGGAAAATTGGTAGACACACGAAGGGGCCTTATTTGGAAAAAAGGAGAAGGAGGAGAGAAGACAAAATGATCCAATTTCCGACGAATGGAAAMGAGCCACGCCCCTTTGGGATGACTCCTTGAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAAGACCTCCTACAGTAGTTAGGGGGCGGAGCTTGTTATAGCAGAATATTTGAAGTGTTTTGCAAATGGGAGAGGGGAAATTGGAAATTGATAATTAGAGAAAAACAGGAAGTTCGATATTTTCAGGAGAAAGTTTTCTGATTGTCAAGAAATGCGACGAGACGGCGGTTCACAAAATCCTGAATACCCCTATCGATCAATTGATCAAAGTGAGGAATCGGGAGACTGATCGAACCACATTGAGCAGATTCGTTTTGGAGGTAATTCGAATTTTATCAATTCTGAGCCCTCTAATAGAAGAGCCCACCAAACCGTCGACTTTGAGCTCAATTATCTCGATTCCTGGAAAAGATGTCTAAAAATTGTTGACTGATAAATTGTTTATCATATTATCACGGATATTTTATCAGTTGATACATTTTTGATATCTTGTAAAGGAGCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAGTGGCCTATGGAAATAAGATA</pcr_primer_p1>
		<pcr_primer_p2>CAAAACACTTCAAATATTCTGCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAGTGGCCTATGGAAATAAGATAAAAAATTACCCAAAGTGGAAAATTGGTAGACACACGAAGGGGCCTTATTTGGAAAAAAGGAGAAGGAGGAGAGAAGACAAAATGATCCAATTTCCGACGAATGGAAACGAGCCACGCCCCTTTGGGATGACTCCTTGAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAAGACCTCCTACAGTAGTTAGGGGGCGGAGCTTGTTATAGCAGAATATTTGAAGTGTTTTG</canonical_amplicon>
		<polymorphic_amplicon>TAGTGGCCTATGGAAATAAGATAAAAAATTACCCAAAGTGGAAAATTGGTAGACACACGAAGGGGCCTTATTTGGAAAAAAGGAGAAGGAGGAGAGAAGACAAAATGATCCAATTTCCGACGAATGGAAAMGAGCCACGCCCCTTTGGGATGACTCCTTGAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAAGACCTCCTACAGTAGTTAGGGGGCGGAGCTTGTTATAGCAGAATATTTGAAGTGTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39385</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>65217</contig_pos>
        <strand>+</strand>
        <context>ATCGGGAGAC[G/T]GATCGAACCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATCCTGAATACCCCTATCGATCAATTGATCAAAGTGAGGAATCGGGAGAC</left_flank>
        <right_flank>GATCGAACCACATTGAGCAGATTCGTTTTGGAGGTAATTCGAATTTTATC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCATTCTCTGCGAGTTGCTCATCTGATTGCTCATCTGCATTGATGCGGCCAACTGCATATCATCAACGGCCATGGTCATTTTTTAGTGGCCTATGGAAATAAGATAAAAAATTACCCAAAGTGGAAAATTGGTAGACACACGAAGGGGCCTTATTTGGAAAAAAGGAGAAGGAGGAGAGAAGACAAAATGATCCAATTTCCGACGAATGGAAACGAGCCACGCCCCTTTGGGATGACTCCTTGAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAAGACCTCCTACAGTAGTTAGGGGGCGGAGCTTGTTATAGCAGAATATTTGAAGTGTTTTGCAAATGGGAGAGGGGAAATTGGAAATTGATAATTAGAGAAAAACAGGAAGTTCGATATTTTCAGGAGAAAGTTTTCTGATTGTCAAGAAATGCGACGAGACGGCGGTTCACAAAATCCTGAATACCCCTATCGATCAATTGATCAAAGTGAGGAATCGGGAGACTGATCGAACCACATTGAGCAGATTCGTTTTGGAGGTAATTCGAATTTTATCAATTCTGAGCCCTCTAATAGAAGAGCCCACCAAACCGTCGACTTTGAGCTCAATTATCTCGATTCCTGGAAAAGATGTCTAAAAATTGTTGACTGATAAATTGTTTATCATATTATCACGGATATTTTATCAGTTGATACATTTTTGATATCTTGTAAAGGAGCCGAGATAAATGAGCTCAAAGTTGACGCCGTCAACTTGACAGCTTCTATTATAAGGAATACTTTGAGATGCAGAAAATTATTTTTTTTCCAATTTTGAAGGATCCAAGTAATCTAAAAAATCTGTGCAATCCAAAAAAATGTATTTTTCAGGGAATCTGCACTGGCCTCACCACATCGCGAACCCAAATCCATCAGCTCTGCTCCTTGCTCCTCTTCAACTCTAACACCACATCAGAATCCGACAATTCTATCGAAATGCTACTCCAAAACTCGTTCATCTCACTAG</canonical>
            <polymorphic>GCTCATTCTCTGCGAGTTGCTCATCTGATTGCTCATCTGCATTGATGCGGCCAACTGCATATCATCAACGGCCATGGTCATTTTTTAGTGGCCTATGGAAATAAGATAAAAAATTACCCAAAGTGGAAAATTGGTAGACACACGAAGGGGCCTTATTTGGAAAAAAGGAGAAGGAGGAGAGAAGACAAAATGATCCAATTTCCGACGAATGGAAACGAGCCACGCCCCTTTGGGATGACTCCTTGAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAAGACCTCCTACAGTAGTTAGGGGGCGGAGCTTGTTATAGCAGAATATTTGAAGTGTTTTGCAAATGGGAGAGGGGAAATTGGAAATTGATAATTAGAGAAAAACAGGAAGTTCGATATTTTCAGGAGAAAGTTTTCTGATTGTCAAGAAATGCGACGAGACGGCGGTTCACAAAATCCTGAATACCCCTATCGATCAATTGATCAAAGTGAGGAATCGGGAGACKGATCGAACCACATTGAGCAGATTCGTTTTGGAGGTAATTCGAATTTTATCAATTCTGAGCCCTCTAATAGAAGAGCCCACCAAACCGTCGACTTTGAGCTCAATTATCTCGATTCCTGGAAAAGATGTCTAAAAATTGTTGACTGATAAATTGTTTATCATATTATCACGGATATTTTATCAGTTGATACATTTTTGATATCTTGTAAAGGAGCCGAGATAAATGAGCTCAAAGTTGACGCCGTCAACTTGACAGCTTCTATTATAAGGAATACTTTGAGATGCAGAAAATTATTTTTTTTCCAATTTTGAAGGATCCAAGTAATCTAAAAAATCTGTGCAATCCAAAAAAATGTATTTTTCAGGGAATCTGCACTGGCCTCACCACATCGCGAACCCAAATCCATCAGCTCTGCTCCTTGCTCCTCTTCAACTCTAACACCACATCAGAATCCGACAATTCTATCGAAATGCTACTCCAAAACTCGTTCATCTCACTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCCTGAATACCCCTATCG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCTGCATCTCAAAGTATTC</pcr_primer_p2>
		<pcr_amplicon_size>343</pcr_amplicon_size>
		<canonical_amplicon>AATCCTGAATACCCCTATCGATCAATTGATCAAAGTGAGGAATCGGGAGACTGATCGAACCACATTGAGCAGATTCGTTTTGGAGGTAATTCGAATTTTATCAATTCTGAGCCCTCTAATAGAAGAGCCCACCAAACCGTCGACTTTGAGCTCAATTATCTCGATTCCTGGAAAAGATGTCTAAAAATTGTTGACTGATAAATTGTTTATCATATTATCACGGATATTTTATCAGTTGATACATTTTTGATATCTTGTAAAGGAGCCGAGATAAATGAGCTCAAAGTTGACGCCGTCAACTTGACAGCTTCTATTATAAGGAATACTTTGAGATGCAGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>AATCCTGAATACCCCTATCGATCAATTGATCAAAGTGAGGAATCGGGAGACKGATCGAACCACATTGAGCAGATTCGTTTTGGAGGTAATTCGAATTTTATCAATTCTGAGCCCTCTAATAGAAGAGCCCACCAAACCGTCGACTTTGAGCTCAATTATCTCGATTCCTGGAAAAGATGTCTAAAAATTGTTGACTGATAAATTGTTTATCATATTATCACGGATATTTTATCAGTTGATACATTTTTGATATCTTGTAAAGGAGCCGAGATAAATGAGCTCAAAGTTGACGCCGTCAACTTGACAGCTTCTATTATAAGGAATACTTTGAGATGCAGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39386</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>65273</contig_pos>
        <strand>+</strand>
        <context>TTATCAATTC[G/T]GAGCcctcta</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AACCACATTGAGCAGATTCGTTTTGGAGGTAATTCGAATTTTATCAATTC</left_flank>
        <right_flank>GAGCCCTCTAATAGAAGAGCCCACCAAACCGTCGACTTTGAGCTCAATTA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCATATCATCAACGGCCATGGTCATTTTTTAGTGGCCTATGGAAATAAGATAAAAAATTACCCAAAGTGGAAAATTGGTAGACACACGAAGGGGCCTTATTTGGAAAAAAGGAGAAGGAGGAGAGAAGACAAAATGATCCAATTTCCGACGAATGGAAACGAGCCACGCCCCTTTGGGATGACTCCTTGAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAAGACCTCCTACAGTAGTTAGGGGGCGGAGCTTGTTATAGCAGAATATTTGAAGTGTTTTGCAAATGGGAGAGGGGAAATTGGAAATTGATAATTAGAGAAAAACAGGAAGTTCGATATTTTCAGGAGAAAGTTTTCTGATTGTCAAGAAATGCGACGAGACGGCGGTTCACAAAATCCTGAATACCCCTATCGATCAATTGATCAAAGTGAGGAATCGGGAGACTGATCGAACCACATTGAGCAGATTCGTTTTGGAGGTAATTCGAATTTTATCAATTCTGAGCCCTCTAATAGAAGAGCCCACCAAACCGTCGACTTTGAGCTCAATTATCTCGATTCCTGGAAAAGATGTCTAAAAATTGTTGACTGATAAATTGTTTATCATATTATCACGGATATTTTATCAGTTGATACATTTTTGATATCTTGTAAAGGAGCCGAGATAAATGAGCTCAAAGTTGACGCCGTCAACTTGACAGCTTCTATTATAAGGAATACTTTGAGATGCAGAAAATTATTTTTTTTCCAATTTTGAAGGATCCAAGTAATCTAAAAAATCTGTGCAATCCAAAAAAATGTATTTTTCAGGGAATCTGCACTGGCCTCACCACATCGCGAACCCAAATCCATCAGCTCTGCTCCTTGCTCCTCTTCAACTCTAACACCACATCAGAATCCGACAATTCTATCGAAATGCTACTCCAAAACTCGTTCATCTCACTAGAAGACGACCTATTCAGTCCAACGCAACTCGGAAGAGCCGCCATCGCATCGTCTCTA</canonical>
            <polymorphic>GCATATCATCAACGGCCATGGTCATTTTTTAGTGGCCTATGGAAATAAGATAAAAAATTACCCAAAGTGGAAAATTGGTAGACACACGAAGGGGCCTTATTTGGAAAAAAGGAGAAGGAGGAGAGAAGACAAAATGATCCAATTTCCGACGAATGGAAACGAGCCACGCCCCTTTGGGATGACTCCTTGAGAAGAGGAAGAAGAAGAGGAAGAAGAAGAAGACCTCCTACAGTAGTTAGGGGGCGGAGCTTGTTATAGCAGAATATTTGAAGTGTTTTGCAAATGGGAGAGGGGAAATTGGAAATTGATAATTAGAGAAAAACAGGAAGTTCGATATTTTCAGGAGAAAGTTTTCTGATTGTCAAGAAATGCGACGAGACGGCGGTTCACAAAATCCTGAATACCCCTATCGATCAATTGATCAAAGTGAGGAATCGGGAGACTGATCGAACCACATTGAGCAGATTCGTTTTGGAGGTAATTCGAATTTTATCAATTCKGAGCCCTCTAATAGAAGAGCCCACCAAACCGTCGACTTTGAGCTCAATTATCTCGATTCCTGGAAAAGATGTCTAAAAATTGTTGACTGATAAATTGTTTATCATATTATCACGGATATTTTATCAGTTGATACATTTTTGATATCTTGTAAAGGAGCCGAGATAAATGAGCTCAAAGTTGACGCCGTCAACTTGACAGCTTCTATTATAAGGAATACTTTGAGATGCAGAAAATTATTTTTTTTCCAATTTTGAAGGATCCAAGTAATCTAAAAAATCTGTGCAATCCAAAAAAATGTATTTTTCAGGGAATCTGCACTGGCCTCACCACATCGCGAACCCAAATCCATCAGCTCTGCTCCTTGCTCCTCTTCAACTCTAACACCACATCAGAATCCGACAATTCTATCGAAATGCTACTCCAAAACTCGTTCATCTCACTAGAAGACGACCTATTCAGTCCAACGCAACTCGGAAGAGCCGCCATCGCATCGTCTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAACCACATTGAGCAGATTC</pcr_primer_p1>
		<pcr_primer_p2>ATTTTCTGCATCTCAAAGTATTC</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>GAACCACATTGAGCAGATTCGTTTTGGAGGTAATTCGAATTTTATCAATTCTGAGCCCTCTAATAGAAGAGCCCACCAAACCGTCGACTTTGAGCTCAATTATCTCGATTCCTGGAAAAGATGTCTAAAAATTGTTGACTGATAAATTGTTTATCATATTATCACGGATATTTTATCAGTTGATACATTTTTGATATCTTGTAAAGGAGCCGAGATAAATGAGCTCAAAGTTGACGCCGTCAACTTGACAGCTTCTATTATAAGGAATACTTTGAGATGCAGAAAAT</canonical_amplicon>
		<polymorphic_amplicon>GAACCACATTGAGCAGATTCGTTTTGGAGGTAATTCGAATTTTATCAATTCKGAGCCCTCTAATAGAAGAGCCCACCAAACCGTCGACTTTGAGCTCAATTATCTCGATTCCTGGAAAAGATGTCTAAAAATTGTTGACTGATAAATTGTTTATCATATTATCACGGATATTTTATCAGTTGATACATTTTTGATATCTTGTAAAGGAGCCGAGATAAATGAGCTCAAAGTTGACGCCGTCAACTTGACAGCTTCTATTATAAGGAATACTTTGAGATGCAGAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39387</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>71093</contig_pos>
        <strand></strand>
        <context>tctgacgtga[A/T]tgtatttgca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGAGAAGATTACTGTAGCTTACTGTAGAATTTGTCTGCATTCTGACGTGA</left_flank>
        <right_flank>TGTATTTGCAAAATGAACTACAAACTATAAGCTACAGTAACCTACAGTAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAATGTTCTCTTCCATCGCCTCGGATTGGTTTATCCAGAAACTTCCAGTTGTAAAATTAAGCAGAGACACCTGCCAACGAATAAGCAGATTCTGAATCAGATGATCGGTCAACATCAGATTGTGGAGAAGATTCTGACGTATCGACATATCCAACACACCCTGACTCAGTGCTTGCTGCCGCTGGCAAATTATGAGAAACGCATTCATTGTCGCATGGAAATGTGCACAGCTACTGGAAGAATGTTGACCAGTAGCCCTAATCTACAGGTGTTTTTTGGAAACTGTAGTTATTAGGTCCCACAACGACAATTACAGTAACCTAAAATGTTTTCATTATCCGGATTTATTTTCGTCGATTTTTCTGTAATTTTTGGCTGTCTAGCTATTTTCAAAGACTCTTTTTCGATTTTTCGGGTTTTTTCGTCTGAAATTTGATGGAACGGTATTCGAGAAGATTACTGTAGCTTACTGTAGAATTTGTCTGCATTCTGACGTGAATGTATTTGCAAAATGAACTACAAACTATAAGCTACAGTAACCTACAGTAATCTTTGCGAACACCATCCCGTGAAATTTCAGACGAAAAATTCGAAAAAATCAAAAAAGAATTATCAAAAATAGATGAAAAAAACTGAAAAATCTGAAAATTTTGCAAAAATGGGTGGAAAAAAAATCAATTACATATTTTAGGTTACTGTAGTTGTCGCCGTGGACCTTCGATCATGGTCACTTTTATCAGAATAATGCAAAACCTTTCTTATTTCAGAATGTCCCTAAGAAAGTGTCTTCCGATGGTCTATCGGCTCGTCAACTATTCAAAGCATCGCCTGGAAATATTCTAATCGGAGCAGACTACAAACAACTCGAGTTACGAGTTCTCGCTCATCTATGTAACGATTCGAAGCTAGTGAAAATCATATCAGAAGATCAAGATCTATTCGGACAATTGTCTTCAGAATGGGGATTTTCTCGCGACGTCGTCAAGCAGTTGTCCTACG</canonical>
            <polymorphic>CTAATGTTCTCTTCCATCGCCTCGGATTGGTTTATCCAGAAACTTCCAGTTGTAAAATTAAGCAGAGACACCTGCCAACGAATAAGCAGATTCTGAATCAGATGATCGGTCAACATCAGATTGTGGAGAAGATTCTGACGTATCGACATATCCAACACACCCTGACTCAGTGCTTGCTGCCGCTGGCAAATTATGAGAAACGCATTCATTGTCGCATGGAAATGTGCACAGCTACTGGAAGAATGTTGACCAGTAGCCCTAATCTACAGGTGTTTTTTGGAAACTGTAGTTATTAGGTCCCACAACGACAATTACAGTAACCTAAAATGTTTTCATTATCCGGATTTATTTTCGTCGATTTTTCTGTAATTTTTGGCTGTCTAGCTATTTTCAAAGACTCTTTTTCGATTTTTCGGGTTTTTTCGTCTGAAATTTGATGGAACGGTATTCGAGAAGATTACTGTAGCTTACTGTAGAATTTGTCTGCATTCTGACGTGAWTGTATTTGCAAAATGAACTACAAACTATAAGCTACAGTAACCTACAGTAATCTTTGCGAACACCATCCCGTGAAATTTCAGACGAAAAATTCGAAAAAATCAAAAAAGAATTATCAAAAATAGATGAAAAAAACTGAAAAATCTGAAAATTTTGCAAAAATGGGTGGAAAAAAAATCAATTACATATTTTAGGTTACTGTAGTTGTCGCCGTGGACCTTCGATCATGGTCACTTTTATCAGAATAATGCAAAACCTTTCTTATTTCAGAATGTCCCTAAGAAAGTGTCTTCCGATGGTCTATCGGCTCGTCAACTATTCAAAGCATCGCCTGGAAATATTCTAATCGGAGCAGACTACAAACAACTCGAGTTACGAGTTCTCGCTCATCTATGTAACGATTCGAAGCTAGTGAAAATCATATCAGAAGATCAAGATCTATTCGGACAATTGTCTTCAGAATGGGGATTTTCTCGCGACGTCGTCAAGCAGTTGTCCTACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGCCCTAATCTACAGGTGTTT</pcr_primer_p1>
		<pcr_primer_p2>CTTTCTTAGGGACATTCTGAAA</pcr_primer_p2>
		<pcr_amplicon_size>532</pcr_amplicon_size>
		<canonical_amplicon>GTAGCCCTAATCTACAGGTGTTTTTTGGAAACTGTAGTTATTAGGTCCCACAACGACAATTACAGTAACCTAAAATGTTTTCATTATCCGGATTTATTTTCGTCGATTTTTCTGTAATTTTTGGCTGTCTAGCTATTTTCAAAGACTCTTTTTCGATTTTTCGGGTTTTTTCGTCTGAAATTTGATGGAACGGTATTCGAGAAGATTACTGTAGCTTACTGTAGAATTTGTCTGCATTCTGACGTGAATGTATTTGCAAAATGAACTACAAACTATAAGCTACAGTAACCTACAGTAATCTTTGCGAACACCATCCCGTGAAATTTCAGACGAAAAATTCGAAAAAATCAAAAAAGAATTATCAAAAATAGATGAAAAAAACTGAAAAATCTGAAAATTTTGCAAAAATGGGTGGAAAAAAAATCAATTACATATTTTAGGTTACTGTAGTTGTCGCCGTGGACCTTCGATCATGGTCACTTTTATCAGAATAATGCAAAACCTTTCTTATTTCAGAATGTCCCTAAGAAAG</canonical_amplicon>
		<polymorphic_amplicon>GTAGCCCTAATCTACAGGTGTTTTTTGGAAACTGTAGTTATTAGGTCCCACAACGACAATTACAGTAACCTAAAATGTTTTCATTATCCGGATTTATTTTCGTCGATTTTTCTGTAATTTTTGGCTGTCTAGCTATTTTCAAAGACTCTTTTTCGATTTTTCGGGTTTTTTCGTCTGAAATTTGATGGAACGGTATTCGAGAAGATTACTGTAGCTTACTGTAGAATTTGTCTGCATTCTGACGTGAWTGTATTTGCAAAATGAACTACAAACTATAAGCTACAGTAACCTACAGTAATCTTTGCGAACACCATCCCGTGAAATTTCAGACGAAAAATTCGAAAAAATCAAAAAAGAATTATCAAAAATAGATGAAAAAAACTGAAAAATCTGAAAATTTTGCAAAAATGGGTGGAAAAAAAATCAATTACATATTTTAGGTTACTGTAGTTGTCGCCGTGGACCTTCGATCATGGTCACTTTTATCAGAATAATGCAAAACCTTTCTTATTTCAGAATGTCCCTAAGAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39388</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>73256</contig_pos>
        <strand></strand>
        <context>ACGGAGAAAA[C/G]CAAAAAGTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AGAGAAAAAGAAGGGAGAGGCAGTAAGGAAAAGAGAAAACACGGAGAAAA</left_flank>
        <right_flank>CAAAAAGTTGTTCATGGAGAAAATGCGCATCGGTGGTTCAGTGGTAGAAT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCGAATTCCAGTATTTCATATTTACGGAGTAACGGATTCTGGCCAGAAGGCGTGCCTTCATATTCACGGAGTTCTCCCATATCTGGTCCTTCGAGCTGGTGGAAAAGTGACCCCAATTGTTTTACAAGGAATGAGAGCTAAAATCAATAAGGGAATTGAAAAGGAGATTGAGACGAGTACTGGCAAAGCGAGCAAATTTTCTGCGGATTATGTGTACAAATTGGAGACGTTTAGTAGTCGGTAAGAGAGCTGAAAAAAGAAAAAAGGAATTGCATCGACCGGGAATCGAACCCGGGCCGCCCGCGTGGCAGGCGAGCATTCTACCACTGAACCACCGATGCGCATTTTCTCTATGAACAACTTTTTGGTTTTCTCCATGTTTTCTCTNNNNNNNNNNAACCACCGATGCTTGTTTAGCCTAGCAGTGAATTGGTGTAGGAGAGGCGAGAGAGAAAAAGAAGGGAGAGGCAGTAAGGAAAAGAGAAAACACGGAGAAAACCAAAAAGTTGTTCATGGAGAAAATGCGCATCGGTGGTTCAGTGGTAGAATGCTCGCCTGCCACGCGGGCGGCCCGGGTTCGATTCCCGGTCGATGCAATTGTTTTCTTCGTCTTTTTTGTGTTATTTATCTACCCCAATTTTCAGATCACTATATGGGTATCAAGATGAAGAAGAGGAATTCGTCAAAGTCTACTTTTCCTCACCATTCTATCTACAAAAAGCGACACATTCTCTTGGCAAAGAAGTGATTGATAAGCCACTTTTCCAGCCATTCGAAGCCCATCTACCCTTTCATCTTCAATTTTTCATCGATAATTCGATATTCGGAATGGATAATATCCATTTGAAAAATGTGAAATTTCGTGTGGATCCTAATGATAATAATAACGATGTTGTCTATCAAAATCTAACGGTAGGAGATGTCAAAAACAATGATAGCTTGTTATCTCCTTATGAGAGAAAGACCACTTGCCACGTGGAATGCGATGCGATGGTGTCG</canonical>
            <polymorphic>GCCGAATTCCAGTATTTCATATTTACGGAGTAACGGATTCTGGCCAGAAGGCGTGCCTTCATATTCACGGAGTTCTCCCATATCTGGTCCTTCGAGCTGGTGGAAAAGTGACCCCAATTGTTTTACAAGGAATGAGAGCTAAAATCAATAAGGGAATTGAAAAGGAGATTGAGACGAGTACTGGCAAAGCGAGCAAATTTTCTGCGGATTATGTGTACAAATTGGAGACGTTTAGTAGTCGGTAAGAGAGCTGAAAAAAGAAAAAAGGAATTGCATCGACCGGGAATCGAACCCGGGCCGCCCGCGTGGCAGGCGAGCATTCTACCACTGAACCACCGATGCGCATTTTCTCTATGAACAACTTTTTGGTTTTCTCCATGTTTTCTCTNNNNNNNNNNAACCACCGATGCTTGTTTAGCCTAGCAGTGAATTGGTGTAGGAGAGGCGAGAGAGAAAAAGAAGGGAGAGGCAGTAAGGAAAAGAGAAAACACGGAGAAAASCAAAAAGTTGTTCATGGAGAAAATGCGCATCGGTGGTTCAGTGGTAGAATGCTCGCCTGCCACGCGGGCGGCCCGGGTTCGATTCCCGGTCGATGCAATTGTTTTCTTCGTCTTTTTTGTGTTATTTATCTACCCCAATTTTCAGATCACTATATGGGTATCAAGATGAAGAAGAGGAATTCGTCAAAGTCTACTTTTCCTCACCATTCTATCTACAAAAAGCGACACATTCTCTTGGCAAAGAAGTGATTGATAAGCCACTTTTCCAGCCATTCGAAGCCCATCTACCCTTTCATCTTCAATTTTTCATCGATAATTCGATATTCGGAATGGATAATATCCATTTGAAAAATGTGAAATTTCGTGTGGATCCTAATGATAATAATAACGATGTTGTCTATCAAAATCTAACGGTAGGAGATGTCAAAAACAATGATAGCTTGTTATCTCCTTATGAGAGAAAGACCACTTGCCACGTGGAATGCGATGCGATGGTGTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGTTTAGCCTAGCAGTGAAT</pcr_primer_p1>
		<pcr_primer_p2>CCCATATAGTGATCTGAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTGTTTAGCCTAGCAGTGAATTGGTGTAGGAGAGGCGAGAGAGAAAAAGAAGGGAGAGGCAGTAAGGAAAAGAGAAAACACGGAGAAAACCAAAAAGTTGTTCATGGAGAAAATGCGCATCGGTGGTTCAGTGGTAGAATGCTCGCCTGCCACGCGGGCGGCCCGGGTTCGATTCCCGGTCGATGCAATTGTTTTCTTCGTCTTTTTTGTGTTATTTATCTACCCCAATTTTCAGATCACTATATGGG</canonical_amplicon>
		<polymorphic_amplicon>CTTGTTTAGCCTAGCAGTGAATTGGTGTAGGAGAGGCGAGAGAGAAAAAGAAGGGAGAGGCAGTAAGGAAAAGAGAAAACACGGAGAAAASCAAAAAGTTGTTCATGGAGAAAATGCGCATCGGTGGTTCAGTGGTAGAATGCTCGCCTGCCACGCGGGCGGCCCGGGTTCGATTCCCGGTCGATGCAATTGTTTTCTTCGTCTTTTTTGTGTTATTTATCTACCCCAATTTTCAGATCACTATATGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39389</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>73357</contig_pos>
        <strand>+</strand>
        <context>CGATGCAATT[C/G]TTTTCTTCGT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCTCGCCTGCCACGCGGGCGGCCCGGGTTCGATTCCCGGTCGATGCAATT</left_flank>
        <right_flank>TTTTCTTCGTCTTTTTTGTGTTATTTATCTACCCCAATTTTCAGATCACT</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGAAAAGTGACCCCAATTGTTTTACAAGGAATGAGAGCTAAAATCAATAAGGGAATTGAAAAGGAGATTGAGACGAGTACTGGCAAAGCGAGCAAATTTTCTGCGGATTATGTGTACAAATTGGAGACGTTTAGTAGTCGGTAAGAGAGCTGAAAAAAGAAAAAAGGAATTGCATCGACCGGGAATCGAACCCGGGCCGCCCGCGTGGCAGGCGAGCATTCTACCACTGAACCACCGATGCGCATTTTCTCTATGAACAACTTTTTGGTTTTCTCCATGTTTTCTCTNNNNNNNNNNAACCACCGATGCTTGTTTAGCCTAGCAGTGAATTGGTGTAGGAGAGGCGAGAGAGAAAAAGAAGGGAGAGGCAGTAAGGAAAAGAGAAAACACGGAGAAAACCAAAAAGTTGTTCATGGAGAAAATGCGCATCGGTGGTTCAGTGGTAGAATGCTCGCCTGCCACGCGGGCGGCCCGGGTTCGATTCCCGGTCGATGCAATTGTTTTCTTCGTCTTTTTTGTGTTATTTATCTACCCCAATTTTCAGATCACTATATGGGTATCAAGATGAAGAAGAGGAATTCGTCAAAGTCTACTTTTCCTCACCATTCTATCTACAAAAAGCGACACATTCTCTTGGCAAAGAAGTGATTGATAAGCCACTTTTCCAGCCATTCGAAGCCCATCTACCCTTTCATCTTCAATTTTTCATCGATAATTCGATATTCGGAATGGATAATATCCATTTGAAAAATGTGAAATTTCGTGTGGATCCTAATGATAATAATAACGATGTTGTCTATCAAAATCTAACGGTAGGAGATGTCAAAAACAATGATAGCTTGTTATCTCCTTATGAGAGAAAGACCACTTGCCACGTGGAATGCGATGCGATGGTGTCGGATATCTTGAATCTTCAGATGCAGGCAGATAATGGTATCTGAAATACTTTGACAATCAATAAATAAGAATTACAGTACACTCCTCGAATCCTGGATTGGAA</canonical>
            <polymorphic>GGAAAAGTGACCCCAATTGTTTTACAAGGAATGAGAGCTAAAATCAATAAGGGAATTGAAAAGGAGATTGAGACGAGTACTGGCAAAGCGAGCAAATTTTCTGCGGATTATGTGTACAAATTGGAGACGTTTAGTAGTCGGTAAGAGAGCTGAAAAAAGAAAAAAGGAATTGCATCGACCGGGAATCGAACCCGGGCCGCCCGCGTGGCAGGCGAGCATTCTACCACTGAACCACCGATGCGCATTTTCTCTATGAACAACTTTTTGGTTTTCTCCATGTTTTCTCTNNNNNNNNNNAACCACCGATGCTTGTTTAGCCTAGCAGTGAATTGGTGTAGGAGAGGCGAGAGAGAAAAAGAAGGGAGAGGCAGTAAGGAAAAGAGAAAACACGGAGAAAACCAAAAAGTTGTTCATGGAGAAAATGCGCATCGGTGGTTCAGTGGTAGAATGCTCGCCTGCCACGCGGGCGGCCCGGGTTCGATTCCCGGTCGATGCAATTSTTTTCTTCGTCTTTTTTGTGTTATTTATCTACCCCAATTTTCAGATCACTATATGGGTATCAAGATGAAGAAGAGGAATTCGTCAAAGTCTACTTTTCCTCACCATTCTATCTACAAAAAGCGACACATTCTCTTGGCAAAGAAGTGATTGATAAGCCACTTTTCCAGCCATTCGAAGCCCATCTACCCTTTCATCTTCAATTTTTCATCGATAATTCGATATTCGGAATGGATAATATCCATTTGAAAAATGTGAAATTTCGTGTGGATCCTAATGATAATAATAACGATGTTGTCTATCAAAATCTAACGGTAGGAGATGTCAAAAACAATGATAGCTTGTTATCTCCTTATGAGAGAAAGACCACTTGCCACGTGGAATGCGATGCGATGGTGTCGGATATCTTGAATCTTCAGATGCAGGCAGATAATGGTATCTGAAATACTTTGACAATCAATAAATAAGAATTACAGTACACTCCTCGAATCCTGGATTGGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAATTG</site>
                <isoschizomers>
                    <enzyme>MfeI</enzyme>
                    <enzyme>MunI</enzyme>
                </isoschizomers>
                <canonical_bands>505 481 14</canonical_bands>
                <polymorphic_bands>986 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTGTTTAGCCTAGCAGTGAAT</pcr_primer_p1>
		<pcr_primer_p2>CCCATATAGTGATCTGAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTGTTTAGCCTAGCAGTGAATTGGTGTAGGAGAGGCGAGAGAGAAAAAGAAGGGAGAGGCAGTAAGGAAAAGAGAAAACACGGAGAAAACCAAAAAGTTGTTCATGGAGAAAATGCGCATCGGTGGTTCAGTGGTAGAATGCTCGCCTGCCACGCGGGCGGCCCGGGTTCGATTCCCGGTCGATGCAATTGTTTTCTTCGTCTTTTTTGTGTTATTTATCTACCCCAATTTTCAGATCACTATATGGG</canonical_amplicon>
		<polymorphic_amplicon>CTTGTTTAGCCTAGCAGTGAATTGGTGTAGGAGAGGCGAGAGAGAAAAAGAAGGGAGAGGCAGTAAGGAAAAGAGAAAACACGGAGAAAACCAAAAAGTTGTTCATGGAGAAAATGCGCATCGGTGGTTCAGTGGTAGAATGCTCGCCTGCCACGCGGGCGGCCCGGGTTCGATTCCCGGTCGATGCAATTSTTTTCTTCGTCTTTTTTGTGTTATTTATCTACCCCAATTTTCAGATCACTATATGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39390</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>73579</contig_pos>
        <strand></strand>
        <context>ATAATTCGAT[A/C]TKCGGAATGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCGAAGCCCATCTACCCTTTCATCTTCAATTTTTCATCGATAATTCGAT</left_flank>
        <right_flank>TTCGGAATGGATAATATCCATTTGAAAAATGTGAAATTTCGTGTGGATCC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCACTGAACCACCGATGCGCATTTTCTCTATGAACAACTTTTTGGTTTTCTCCATGTTTTCTCTNNNNNNNNNNAACCACCGATGCTTGTTTAGCCTAGCAGTGAATTGGTGTAGGAGAGGCGAGAGAGAAAAAGAAGGGAGAGGCAGTAAGGAAAAGAGAAAACACGGAGAAAACCAAAAAGTTGTTCATGGAGAAAATGCGCATCGGTGGTTCAGTGGTAGAATGCTCGCCTGCCACGCGGGCGGCCCGGGTTCGATTCCCGGTCGATGCAATTGTTTTCTTCGTCTTTTTTGTGTTATTTATCTACCCCAATTTTCAGATCACTATATGGGTATCAAGATGAAGAAGAGGAATTCGTCAAAGTCTACTTTTCCTCACCATTCTATCTACAAAAAGCGACACATTCTCTTGGCAAAGAAGTGATTGATAAGCCACTTTTCCAGCCATTCGAAGCCCATCTACCCTTTCATCTTCAATTTTTCATCGATAATTCGATATTCGGAATGGATAATATCCATTTGAAAAATGTGAAATTTCGTGTGGATCCTAATGATAATAATAACGATGTTGTCTATCAAAATCTAACGGTAGGAGATGTCAAAAACAATGATAGCTTGTTATCTCCTTATGAGAGAAAGACCACTTGCCACGTGGAATGCGATGCGATGGTGTCGGATATCTTGAATCTTCAGATGCAGGCAGATAATGGTATCTGAAATACTTTGACAATCAATAAATAAGAATTACAGTACACTCCTCGAATCCTGGATTGGAATATATATGGAGAGAAGAAAAAGAACGATGTGATGCAGAAGGAACCGAGTTGAAGGACACTTTCAATTCATGTAAACTTCAAAATTCAGAGTAAAATTTTAGAATATTGAAAGTATGACTTTTCAGATGAGCCCCGAAAATCGACAATCTGGCCGCAGGAGCGAGAAATGCTTCGGACCGCCCGTAAAATGGCGAAACGTTTTAGAGAAGAACGGTGTATGTC</canonical>
            <polymorphic>ACCACTGAACCACCGATGCGCATTTTCTCTATGAACAACTTTTTGGTTTTCTCCATGTTTTCTCTNNNNNNNNNNAACCACCGATGCTTGTTTAGCCTAGCAGTGAATTGGTGTAGGAGAGGCGAGAGAGAAAAAGAAGGGAGAGGCAGTAAGGAAAAGAGAAAACACGGAGAAAACCAAAAAGTTGTTCATGGAGAAAATGCGCATCGGTGGTTCAGTGGTAGAATGCTCGCCTGCCACGCGGGCGGCCCGGGTTCGATTCCCGGTCGATGCAATTGTTTTCTTCGTCTTTTTTGTGTTATTTATCTACCCCAATTTTCAGATCACTATATGGGTATCAAGATGAAGAAGAGGAATTCGTCAAAGTCTACTTTTCCTCACCATTCTATCTACAAAAAGCGACACATTCTCTTGGCAAAGAAGTGATTGATAAGCCACTTTTCCAGCCATTCGAAGCCCATCTACCCTTTCATCTTCAATTTTTCATCGATAATTCGATMTTCGGAATGGATAATATCCATTTGAAAAATGTGAAATTTCGTGTGGATCCTAATGATAATAATAACGATGTTGTCTATCAAAATCTAACGGTAGGAGATGTCAAAAACAATGATAGCTTGTTATCTCCTTATGAGAGAAAGACCACTTGCCACGTGGAATGCGATGCGATGGTGTCGGATATCTTGAATCTTCAGATGCAGGCAGATAATGGTATCTGAAATACTTTGACAATCAATAAATAAGAATTACAGTACACTCCTCGAATCCTGGATTGGAATATATATGGAGAGAAGAAAAAGAACGATGTGATGCAGAAGGAACCGAGTTGAAGGACACTTTCAATTCATGTAAACTTCAAAATTCAGAGTAAAATTTTAGAATATTGAAAGTATGACTTTTCAGATGAGCCCCGAAAATCGACAATCTGGCCGCAGGAGCGAGAAATGCTTCGGACCGCCCGTAAAATGGCGAAACGTTTTAGAGAAGAACGGTGTATGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCTACTTTTCCTCACCATTCT</pcr_primer_p1>
		<pcr_primer_p2>ATCATTGTTTTTGACATCTCCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTCTACTTTTCCTCACCATTCTATCTACAAAAAGCGACACATTCTCTTGGCAAAGAAGTGATTGATAAGCCACTTTTCCAGCCATTCGAAGCCCATCTACCCTTTCATCTTCAATTTTTCATCGATAATTCGATATTCGGAATGGATAATATCCATTTGAAAAATGTGAAATTTCGTGTGGATCCTAATGATAATAATAACGATGTTGTCTATCAAAATCTAACGGTAGGAGATGTCAAAAACAATGAT</canonical_amplicon>
		<polymorphic_amplicon>AGTCTACTTTTCCTCACCATTCTATCTACAAAAAGCGACACATTCTCTTGGCAAAGAAGTGATTGATAAGCCACTTTTCCAGCCATTCGAAGCCCATCTACCCTTTCATCTTCAATTTTTCATCGATAATTCGATMTTCGGAATGGATAATATCCATTTGAAAAATGTGAAATTTCGTGTGGATCCTAATGATAATAATAACGATGTTGTCTATCAAAATCTAACGGTAGGAGATGTCAAAAACAATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39391</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>73581</contig_pos>
        <strand></strand>
        <context>AATTCGATMT[T/G]CGGAATGGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CGAAGCCCATCTACCCTTTCATCTTCAATTTTTCATCGATAATTCGATAT</left_flank>
        <right_flank>CGGAATGGATAATATCCATTTGAAAAATGTGAAATTTCGTGTGGATCCTA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACTGAACCACCGATGCGCATTTTCTCTATGAACAACTTTTTGGTTTTCTCCATGTTTTCTCTNNNNNNNNNNAACCACCGATGCTTGTTTAGCCTAGCAGTGAATTGGTGTAGGAGAGGCGAGAGAGAAAAAGAAGGGAGAGGCAGTAAGGAAAAGAGAAAACACGGAGAAAACCAAAAAGTTGTTCATGGAGAAAATGCGCATCGGTGGTTCAGTGGTAGAATGCTCGCCTGCCACGCGGGCGGCCCGGGTTCGATTCCCGGTCGATGCAATTGTTTTCTTCGTCTTTTTTGTGTTATTTATCTACCCCAATTTTCAGATCACTATATGGGTATCAAGATGAAGAAGAGGAATTCGTCAAAGTCTACTTTTCCTCACCATTCTATCTACAAAAAGCGACACATTCTCTTGGCAAAGAAGTGATTGATAAGCCACTTTTCCAGCCATTCGAAGCCCATCTACCCTTTCATCTTCAATTTTTCATCGATAATTCGATATTCGGAATGGATAATATCCATTTGAAAAATGTGAAATTTCGTGTGGATCCTAATGATAATAATAACGATGTTGTCTATCAAAATCTAACGGTAGGAGATGTCAAAAACAATGATAGCTTGTTATCTCCTTATGAGAGAAAGACCACTTGCCACGTGGAATGCGATGCGATGGTGTCGGATATCTTGAATCTTCAGATGCAGGCAGATAATGGTATCTGAAATACTTTGACAATCAATAAATAAGAATTACAGTACACTCCTCGAATCCTGGATTGGAATATATATGGAGAGAAGAAAAAGAACGATGTGATGCAGAAGGAACCGAGTTGAAGGACACTTTCAATTCATGTAAACTTCAAAATTCAGAGTAAAATTTTAGAATATTGAAAGTATGACTTTTCAGATGAGCCCCGAAAATCGACAATCTGGCCGCAGGAGCGAGAAATGCTTCGGACCGCCCGTAAAATGGCGAAACGTTTTAGAGAAGAACGGTGTATGTCGG</canonical>
            <polymorphic>CACTGAACCACCGATGCGCATTTTCTCTATGAACAACTTTTTGGTTTTCTCCATGTTTTCTCTNNNNNNNNNNAACCACCGATGCTTGTTTAGCCTAGCAGTGAATTGGTGTAGGAGAGGCGAGAGAGAAAAAGAAGGGAGAGGCAGTAAGGAAAAGAGAAAACACGGAGAAAACCAAAAAGTTGTTCATGGAGAAAATGCGCATCGGTGGTTCAGTGGTAGAATGCTCGCCTGCCACGCGGGCGGCCCGGGTTCGATTCCCGGTCGATGCAATTGTTTTCTTCGTCTTTTTTGTGTTATTTATCTACCCCAATTTTCAGATCACTATATGGGTATCAAGATGAAGAAGAGGAATTCGTCAAAGTCTACTTTTCCTCACCATTCTATCTACAAAAAGCGACACATTCTCTTGGCAAAGAAGTGATTGATAAGCCACTTTTCCAGCCATTCGAAGCCCATCTACCCTTTCATCTTCAATTTTTCATCGATAATTCGATATKCGGAATGGATAATATCCATTTGAAAAATGTGAAATTTCGTGTGGATCCTAATGATAATAATAACGATGTTGTCTATCAAAATCTAACGGTAGGAGATGTCAAAAACAATGATAGCTTGTTATCTCCTTATGAGAGAAAGACCACTTGCCACGTGGAATGCGATGCGATGGTGTCGGATATCTTGAATCTTCAGATGCAGGCAGATAATGGTATCTGAAATACTTTGACAATCAATAAATAAGAATTACAGTACACTCCTCGAATCCTGGATTGGAATATATATGGAGAGAAGAAAAAGAACGATGTGATGCAGAAGGAACCGAGTTGAAGGACACTTTCAATTCATGTAAACTTCAAAATTCAGAGTAAAATTTTAGAATATTGAAAGTATGACTTTTCAGATGAGCCCCGAAAATCGACAATCTGGCCGCAGGAGCGAGAAATGCTTCGGACCGCCCGTAAAATGGCGAAACGTTTTAGAGAAGAACGGTGTATGTCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>319 183 173 148 50 50 37 23 17</canonical_bands>
                <polymorphic_bands>356 319 148 50 50 37 23 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTCTACTTTTCCTCACCATTCT</pcr_primer_p1>
		<pcr_primer_p2>ATCATTGTTTTTGACATCTCCTA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTCTACTTTTCCTCACCATTCTATCTACAAAAAGCGACACATTCTCTTGGCAAAGAAGTGATTGATAAGCCACTTTTCCAGCCATTCGAAGCCCATCTACCCTTTCATCTTCAATTTTTCATCGATAATTCGATATTCGGAATGGATAATATCCATTTGAAAAATGTGAAATTTCGTGTGGATCCTAATGATAATAATAACGATGTTGTCTATCAAAATCTAACGGTAGGAGATGTCAAAAACAATGAT</canonical_amplicon>
		<polymorphic_amplicon>AGTCTACTTTTCCTCACCATTCTATCTACAAAAAGCGACACATTCTCTTGGCAAAGAAGTGATTGATAAGCCACTTTTCCAGCCATTCGAAGCCCATCTACCCTTTCATCTTCAATTTTTCATCGATAATTCGATATKCGGAATGGATAATATCCATTTGAAAAATGTGAAATTTCGTGTGGATCCTAATGATAATAATAACGATGTTGTCTATCAAAATCTAACGGTAGGAGATGTCAAAAACAATGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39392</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>177734</contig_pos>
        <strand>+</strand>
        <context>TTTTTGAAGA[A/C]GTCTCGAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTCATCATAATAGTTGAAATGATACATGATGTTTGAGGTGTTTTTGAAGA</left_flank>
        <right_flank>GTCTCGAAACGTTCCCATGTAGAAAGTGATAAATTGATGGGCACTTTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCTAAAAATACTTTAATTTTCAAAATTAATTTGCTCCGTTTTCACTGGTTTTCGTCGATTTTTTAGAGTGAAAAAATTCACTGAAAACGCACGAAATTCGAGAAAACTAATTCTGAAAATAACATTTTTAGGTTACGGTAGTTGTCGTTGTGGGACCTTCGAAGGCTTTCACAGCTCCGATTTTTTGTACCATAATAATATCAAAAATTTCCGTAAACTCACATTTACCACCCTAACTACTATATGAAAATGGTCTTTAAATCCCAACCACTTCTGTTTGGTGGTGACGTGGAATTCGGCAGTCATGTGTGCACCTCCTCTGATCATCAAGGCAGCGATCACTTTGATTTCTGGGTCACGATGAGTTGTGGCATATCTCTCGAAATAACTTCGAAGTCGAGTATAATCCATTTCCTTCTCCATATAACATCCAATTCCCTTGACCCCTTCATCATAATAGTTGAAATGATACATGATGTTTGAGGTGTTTTTGAAGAAGTCTCGAAACGTTCCCATGTAGAAAGTGATAAATTGATGGGCACTTTTTGTTCGGATCATTTTGGGATACAGCGATCTAGAATCGCTAACGAAGTTCTAGAAATTTAACTATAACCAGGTCACTTATAAGAATATTACCGGGCTAACCGCATTATCTACATATACAACGAGACAGGTTAGAAATATAAGTACCTCCACGATTCTCATCGGAACAAGAATCAAAATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGACGAGATTCGTGTGTGCTCTCGTTTAAAAAAAAACGGATTGAAGGGAGCCCTAAAACATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGGTAATCGGTGGGCTTTTTCGAGATCGAACTTTAAAAACAAATGTCTTCGCCGTGAATTGAAATCTCGTCGGCTAAATGTGAG</canonical>
            <polymorphic>AACCTAAAAATACTTTAATTTTCAAAATTAATTTGCTCCGTTTTCACTGGTTTTCGTCGATTTTTTAGAGTGAAAAAATTCACTGAAAACGCACGAAATTCGAGAAAACTAATTCTGAAAATAACATTTTTAGGTTACGGTAGTTGTCGTTGTGGGACCTTCGAAGGCTTTCACAGCTCCGATTTTTTGTACCATAATAATATCAAAAATTTCCGTAAACTCACATTTACCACCCTAACTACTATATGAAAATGGTCTTTAAATCCCAACCACTTCTGTTTGGTGGTGACGTGGAATTCGGCAGTCATGTGTGCACCTCCTCTGATCATCAAGGCAGCGATCACTTTGATTTCTGGGTCACGATGAGTTGTGGCATATCTCTCGAAATAACTTCGAAGTCGAGTATAATCCATTTCCTTCTCCATATAACATCCAATTCCCTTGACCCCTTCATCATAATAGTTGAAATGATACATGATGTTTGAGGTGTTTTTGAAGAMGTCTCGAAACGTTCCCATGTAGAAAGTGATAAATTGATGGGCACTTTTTGTTCGGATCATTTTGGGATACAGCGATCTAGAATCGCTAACGAAGTTCTAGAAATTTAACTATAACCAGGTCACTTATAAGAATATTACCGGGCTAACCGCATTATCTACATATACAACGAGACAGGTTAGAAATATAAGTACCTCCACGATTCTCATCGGAACAAGAATCAAAATTTAAAAGGAGCGGAGTCAGAACAAAAAGAGCAAAACGATGAAAGTAGAAGGGAGGGTGCATGGCTATGTTTCTGAAAATTGTAGGTTACGAATGACGAGATTCGTGTGTGCTCTCGTTTAAAAAAAAACGGATTGAAGGGAGCCCTAAAACATTGACATGCAAATGGGGGAATATAATGGGGGCTTTTTGAGGGTAATCGGTGGGCTTTTTCGAGATCGAACTTTAAAAACAAATGTCTTCGCCGTGAATTGAAATCTCGTCGGCTAAATGTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGTATAATCCATTTCCTTCTCC</pcr_primer_p1>
		<pcr_primer_p2>CCCGGTAATATTCTTATAAGTGAC</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GAGTATAATCCATTTCCTTCTCCATATAACATCCAATTCCCTTGACCCCTTCATCATAATAGTTGAAATGATACATGATGTTTGAGGTGTTTTTGAAGAAGTCTCGAAACGTTCCCATGTAGAAAGTGATAAATTGATGGGCACTTTTTGTTCGGATCATTTTGGGATACAGCGATCTAGAATCGCTAACGAAGTTCTAGAAATTTAACTATAACCAGGTCACTTATAAGAATATTACCGGG</canonical_amplicon>
		<polymorphic_amplicon>GAGTATAATCCATTTCCTTCTCCATATAACATCCAATTCCCTTGACCCCTTCATCATAATAGTTGAAATGATACATGATGTTTGAGGTGTTTTTGAAGAMGTCTCGAAACGTTCCCATGTAGAAAGTGATAAATTGATGGGCACTTTTTGTTCGGATCATTTTGGGATACAGCGATCTAGAATCGCTAACGAAGTTCTAGAAATTTAACTATAACCAGGTCACTTATAAGAATATTACCGGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39393</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>185379</contig_pos>
        <strand></strand>
        <context>AGtaaaataa[T/A]aaaaaattaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AGAAAATTGCCATTTTGCTTCCCTCTTAAAAACCTCAAATAGTAAAATAA</left_flank>
        <right_flank>AAAAAATTAAAAAGAGAAAAAAAAATTGAGAGGAGAAGGGTGTGTCCAGG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTATATGAGAATGCAATATCATCATTTTAAGAAGAAAATTCAAAAGGGACATACTAGAGGGGAATGAAGGGGGGAGAAGAATTATGTACAACACATTATCACAGTTTTTGCTTTGATGGCTTTGAGTGCTTATAAGCGGTTATTCAGAGGGAAGCAAAGACAAAAAAGCTGGAGGTTTCTAGGTCATTTGCTTGTCCACGTGGACTCCACGGCTAGCCAAGCGAGACTCTTGTAGGAAATTCCATGCGCCTTTAATGTTGAATTGATTTACCGGCTAGAATTTTGATTTTGAGCTCTTAATTGACTTGAGCTCGTTTTGAGTAATGTTGAGCTTGTAAATCGCTTCAAAGCTAAAGGAGCACAACGTTTCCTGTAAGGGATCCGCTTGGCCGGCTGTGTAGTCCAGCGAGTGACCTGGAAAACTTCAGCGATTTTGGCGACCGCGGAGAAAATTGCCATTTTGCTTCCCTCTTAAAAACCTCAAATAGTAAAATAATAAAAAATTAAAAAGAGAAAAAAAAATTGAGAGGAGAAGGGTGTGTCCAGGAACAGTCGTCAAATTTTGGGGGATAAATGGGGGATGTTTTTCCTTCAATTCGGAAATTAATGTAATATGGCGCGGCGACACTGTTTCCGGAGATCAATTGCACATCCTTATATTGACTCCATCATCAATCGAAAAATTAAAAAGGGTAGAACCGCTTCACCAATTGGACCCTTCTGACGTCTTCAAAATCAATTTGGTTTCTTCATTTTCGCCGCAAAAAATCGGCTTCCGATTACTAGCAAATTGACTTCTTGAGGTGGAGAAGAAGACAAGACAAATGAACCATATTGATGAGCTTCTTGACTAGATTTCAGACTGCAAAAAGTTTAAGAAATTTATACTAGTTACAGTAATCCCTTACCTCTCCCGAACAACAAAAATCCATTTGAAAAGTGATTATCTCTTCATTGGATTCTTTGAAATTCGATAGGAATAATTACCTGGAAAAAG</canonical>
            <polymorphic>AAATTATATGAGAATGCAATATCATCATTTTAAGAAGAAAATTCAAAAGGGACATACTAGAGGGGAATGAAGGGGGGAGAAGAATTATGTACAACACATTATCACAGTTTTTGCTTTGATGGCTTTGAGTGCTTATAAGCGGTTATTCAGAGGGAAGCAAAGACAAAAAAGCTGGAGGTTTCTAGGTCATTTGCTTGTCCACGTGGACTCCACGGCTAGCCAAGCGAGACTCTTGTAGGAAATTCCATGCGCCTTTAATGTTGAATTGATTTACCGGCTAGAATTTTGATTTTGAGCTCTTAATTGACTTGAGCTCGTTTTGAGTAATGTTGAGCTTGTAAATCGCTTCAAAGCTAAAGGAGCACAACGTTTCCTGTAAGGGATCCGCTTGGCCGGCTGTGTAGTCCAGCGAGTGACCTGGAAAACTTCAGCGATTTTGGCGACCGCGGAGAAAATTGCCATTTTGCTTCCCTCTTAAAAACCTCAAATAGTAAAATAAWAAAAAATTAAAAAGAGAAAAAAAAATTGAGAGGAGAAGGGTGTGTCCAGGAACAGTCGTCAAATTTTGGGGGATAAATGGGGGATGTTTTTCCTTCAATTCGGAAATTAATGTAATATGGCGCGGCGACACTGTTTCCGGAGATCAATTGCACATCCTTATATTGACTCCATCATCAATCGAAAAATTAAAAAGGGTAGAACCGCTTCACCAATTGGACCCTTCTGACGTCTTCAAAATCAATTTGGTTTCTTCATTTTCGCCGCAAAAAATCGGCTTCCGATTACTAGCAAATTGACTTCTTGAGGTGGAGAAGAAGACAAGACAAATGAACCATATTGATGAGCTTCTTGACTAGATTTCAGACTGCAAAAAGTTTAAGAAATTTATACTAGTTACAGTAATCCCTTACCTCTCCCGAACAACAAAAATCCATTTGAAAAGTGATTATCTCTTCATTGGATTCTTTGAAATTCGATAGGAATAATTACCTGGAAAAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTGAGCTCGTTTTGAGTAAT</pcr_primer_p1>
		<pcr_primer_p2>CAAAATTTGACGACTGTTCC</pcr_primer_p2>
		<pcr_amplicon_size>262</pcr_amplicon_size>
		<canonical_amplicon>ACTTGAGCTCGTTTTGAGTAATGTTGAGCTTGTAAATCGCTTCAAAGCTAAAGGAGCACAACGTTTCCTGTAAGGGATCCGCTTGGCCGGCTGTGTAGTCCAGCGAGTGACCTGGAAAACTTCAGCGATTTTGGCGACCGCGGAGAAAATTGCCATTTTGCTTCCCTCTTAAAAACCTCAAATAGTAAAATAATAAAAAATTAAAAAGAGAAAAAAAAATTGAGAGGAGAAGGGTGTGTCCAGGAACAGTCGTCAAATTTTG</canonical_amplicon>
		<polymorphic_amplicon>ACTTGAGCTCGTTTTGAGTAATGTTGAGCTTGTAAATCGCTTCAAAGCTAAAGGAGCACAACGTTTCCTGTAAGGGATCCGCTTGGCCGGCTGTGTAGTCCAGCGAGTGACCTGGAAAACTTCAGCGATTTTGGCGACCGCGGAGAAAATTGCCATTTTGCTTCCCTCTTAAAAACCTCAAATAGTAAAATAAWAAAAAATTAAAAAGAGAAAAAAAAATTGAGAGGAGAAGGGTGTGTCCAGGAACAGTCGTCAAATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39394</snp_id>
        <super_contig>c013600687.Contig2</super_contig>
        <contig_pos>186015</contig_pos>
        <strand>+</strand>
        <context>GCAAAACTGG[C/T]CAGCAGTCTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTTTGATAAGAAAGTTGAGCACAAAAACTCTTTTCAAGAGCAAAACTGG</left_flank>
        <right_flank>CAGCAGTCTTGAAAGGGCACACAACTGAGCACCTTCTTCTTCTCCAACAT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGGAGATCAATTGCACATCCTTATATTGACTCCATCATCAATCGAAAAATTAAAAAGGGTAGAACCGCTTCACCAATTGGACCCTTCTGACGTCTTCAAAATCAATTTGGTTTCTTCATTTTCGCCGCAAAAAATCGGCTTCCGATTACTAGCAAATTGACTTCTTGAGGTGGAGAAGAAGACAAGACAAATGAACCATATTGATGAGCTTCTTGACTAGATTTCAGACTGCAAAAAGTTTAAGAAATTTATACTAGTTACAGTAATCCCTTACCTCTCCCGAACAACAAAAATCCATTTGAAAAGTGATTATCTCTTCATTGGATTCTTTGAAATTCGATAGGAATAATTACCTGGAAAAAGTCATTCAATTTTTAAGAAAAATTTCAGCTGAAAAGTGAAAAGTTGAAAAGAGAAAAGTGAAAATGAGCGCTCCACTCTTATCAGCAGTTTGATAAGAAAGTTGAGCACAAAAACTCTTTTCAAGAGCAAAACTGGCCAGCAGTCTTGAAAGGGCACACAACTGAGCACCTTCTTCTTCTCCAACATTTAGGCCACGCCCACTTTTGGTTTCCATAGAGAGCAACAAAAGAGTGTGGAGACGCAGAGAAACTTGGGGGAAATATAATTAGAGAGTTTATCAAGCCGGAATGAGAAACGAATGGGAACACCTAATATGAGATTAGGGTTCTCATTTTAGTTTGGTTTCGTGGAGCTGTGTGAAATATGCAGAATAGAAGATTTGGCATTTCCAAGAAATAGGGAAGAATGGAATGGAAGGTGGGAAGAATGATGGAAACAATTTTATGACTATGGGAATCTGAAAAAAGGAAGAATCGGGAACCGTTTTTTTGTAAGAAAAGGAAATTTCGAAATTCTGAAATTTCAGAGAAAAAGAAAGTGACGAGGGTCTTCCAAATTCTGGAGTATAATGATTGTGAACACAACTAGATGCTTGAAAGTACATTTATAATATAATAATAGGTCAATTTTTCACAA</canonical>
            <polymorphic>CCGGAGATCAATTGCACATCCTTATATTGACTCCATCATCAATCGAAAAATTAAAAAGGGTAGAACCGCTTCACCAATTGGACCCTTCTGACGTCTTCAAAATCAATTTGGTTTCTTCATTTTCGCCGCAAAAAATCGGCTTCCGATTACTAGCAAATTGACTTCTTGAGGTGGAGAAGAAGACAAGACAAATGAACCATATTGATGAGCTTCTTGACTAGATTTCAGACTGCAAAAAGTTTAAGAAATTTATACTAGTTACAGTAATCCCTTACCTCTCCCGAACAACAAAAATCCATTTGAAAAGTGATTATCTCTTCATTGGATTCTTTGAAATTCGATAGGAATAATTACCTGGAAAAAGTCATTCAATTTTTAAGAAAAATTTCAGCTGAAAAGTGAAAAGTTGAAAAGAGAAAAGTGAAAATGAGCGCTCCACTCTTATCAGCAGTTTGATAAGAAAGTTGAGCACAAAAACTCTTTTCAAGAGCAAAACTGGYCAGCAGTCTTGAAAGGGCACACAACTGAGCACCTTCTTCTTCTCCAACATTTAGGCCACGCCCACTTTTGGTTTCCATAGAGAGCAACAAAAGAGTGTGGAGACGCAGAGAAACTTGGGGGAAATATAATTAGAGAGTTTATCAAGCCGGAATGAGAAACGAATGGGAACACCTAATATGAGATTAGGGTTCTCATTTTAGTTTGGTTTCGTGGAGCTGTGTGAAATATGCAGAATAGAAGATTTGGCATTTCCAAGAAATAGGGAAGAATGGAATGGAAGGTGGGAAGAATGATGGAAACAATTTTATGACTATGGGAATCTGAAAAAAGGAAGAATCGGGAACCGTTTTTTTGTAAGAAAAGGAAATTTCGAAATTCTGAAATTTCAGAGAAAAAGAAAGTGACGAGGGTCTTCCAAATTCTGGAGTATAATGATTGTGAACACAACTAGATGCTTGAAAGTACATTTATAATATAATAATAGGTCAATTTTTCACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGGCCA</site>
                <isoschizomers>
                    <enzyme>BalI</enzyme>
                    <enzyme>MlsI</enzyme>
                    <enzyme>MluNI</enzyme>
                    <enzyme>MscI</enzyme>
                    <enzyme>Msp20I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>499 445 56</canonical_bands>
                <polymorphic_bands>555 445</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>284 182 139 108 91 70 70 56</canonical_bands>
                <polymorphic_bands>284 182 164 139 91 70 70</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>499 445 56</canonical_bands>
                <polymorphic_bands>555 445</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTACCTGGAAAAAGTCATTCA</pcr_primer_p1>
		<pcr_primer_p2>CACACTCTTTTGTTGCTCTCTAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTACCTGGAAAAAGTCATTCAATTTTTAAGAAAAATTTCAGCTGAAAAGTGAAAAGTTGAAAAGAGAAAAGTGAAAATGAGCGCTCCACTCTTATCAGCAGTTTGATAAGAAAGTTGAGCACAAAAACTCTTTTCAAGAGCAAAACTGGCCAGCAGTCTTGAAAGGGCACACAACTGAGCACCTTCTTCTTCTCCAACATTTAGGCCACGCCCACTTTTGGTTTCCATAGAGAGCAACAAAAGAGTGTG</canonical_amplicon>
		<polymorphic_amplicon>ATTACCTGGAAAAAGTCATTCAATTTTTAAGAAAAATTTCAGCTGAAAAGTGAAAAGTTGAAAAGAGAAAAGTGAAAATGAGCGCTCCACTCTTATCAGCAGTTTGATAAGAAAGTTGAGCACAAAAACTCTTTTCAAGAGCAAAACTGGYCAGCAGTCTTGAAAGGGCACACAACTGAGCACCTTCTTCTTCTCCAACATTTAGGCCACGCCCACTTTTGGTTTCCATAGAGAGCAACAAAAGAGTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39395</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>14345</contig_pos>
        <strand>+</strand>
        <context>GTTTTCGAAG[A/T]TTTTTTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTAGTTTCCAATGATGGGAATGTCCTGTTTGCGCCACCAGGTTTTCGAAG</left_flank>
        <right_flank>TTTTTTTTCAAATTCTGAATTGTTTTAATTTTTCAGGCATTATGCAGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCTGAGAAAAAATCAATTTTCTTCTCGAAAATCCAAAAAAATTCTCTCGAAATTCGAAAACAGAGAAAATAAATCCGGAAATTTTAAATATTTTTTGGTTACTGTAGTTTTCGTTGTGGGACCTTCGCCGACATCTCCGGGTTTTTTGTACCAGCATAATTCAGATACGATCCAATGGAGCGTCCAGTTTCTGATCATATGAAACCTGTAAACGTAAAACTCCGTTTGATTCTTCAGCAACTAGTAGACGTTGATGAGAAAAATCAAGTGATAACTCTGGTAGTGTGGACACAGTATACGTGGAACGACTACAAAATGAAATGGTCTCCAGAAGAGTACGGTAACATCACAAGTCTTCAGATTCCGTTTGGAACACTTTGGAAACCAGATATTCTGTTGTTTAATAGTGCAAATGAACATTTTGATTCAAGTTTTCCGGTGAATATGGTAGTTTCCAATGATGGGAATGTCCTGTTTGCGCCACCAGGTTTTCGAAGTTTTTTTTTCAAATTCTGAATTGTTTTAATTTTTCAGGCATTATGCAGTTTTCATGCTCTCTTTCAATGACCTGGTTCCCATATGATGAACAAGTTTGTTATCTGAAAGTAGGTGTTAAAAAAAGTATAACTGTATTTCCTTTAATAGAAGAAACCTCAAACTTTGAGCTCAATTATATCGATTCCTGAGAAAGATATCAAAACTTTGTCAACTGATAAAATGTTTTTGATATTATGATAAGCAATTTGTTAGCTGATCACTCTTTTATATCTTTCAAAGGAACCGAGATATACAAGCTCAAAGTTAAGTTGGCTTCTATTAAAGAAAAAATTTTTCACAAAATGATCGGAGCCCTGGAAGAGAGTTGCCGGCGACCGAAGTCCCACAGCGACAACTACAGTAACCTAAAAATTTTTATTTTTAATTTCAGAGTTATTTTCTTGTTTTTCACTGCCTTTTGTCAATTGTTCTGTGTTTTTTCCACTAAAAAGAAACATTTG</canonical>
            <polymorphic>AATCTGAGAAAAAATCAATTTTCTTCTCGAAAATCCAAAAAAATTCTCTCGAAATTCGAAAACAGAGAAAATAAATCCGGAAATTTTAAATATTTTTTGGTTACTGTAGTTTTCGTTGTGGGACCTTCGCCGACATCTCCGGGTTTTTTGTACCAGCATAATTCAGATACGATCCAATGGAGCGTCCAGTTTCTGATCATATGAAACCTGTAAACGTAAAACTCCGTTTGATTCTTCAGCAACTAGTAGACGTTGATGAGAAAAATCAAGTGATAACTCTGGTAGTGTGGACACAGTATACGTGGAACGACTACAAAATGAAATGGTCTCCAGAAGAGTACGGTAACATCACAAGTCTTCAGATTCCGTTTGGAACACTTTGGAAACCAGATATTCTGTTGTTTAATAGTGCAAATGAACATTTTGATTCAAGTTTTCCGGTGAATATGGTAGTTTCCAATGATGGGAATGTCCTGTTTGCGCCACCAGGTTTTCGAAGWTTTTTTTTCAAATTCTGAATTGTTTTAATTTTTCAGGCATTATGCAGTTTTCATGCTCTCTTTCAATGACCTGGTTCCCATATGATGAACAAGTTTGTTATCTGAAAGTAGGTGTTAAAAAAAGTATAACTGTATTTCCTTTAATAGAAGAAACCTCAAACTTTGAGCTCAATTATATCGATTCCTGAGAAAGATATCAAAACTTTGTCAACTGATAAAATGTTTTTGATATTATGATAAGCAATTTGTTAGCTGATCACTCTTTTATATCTTTCAAAGGAACCGAGATATACAAGCTCAAAGTTAAGTTGGCTTCTATTAAAGAAAAAATTTTTCACAAAATGATCGGAGCCCTGGAAGAGAGTTGCCGGCGACCGAAGTCCCACAGCGACAACTACAGTAACCTAAAAATTTTTATTTTTAATTTCAGAGTTATTTTCTTGTTTTTCACTGCCTTTTGTCAATTGTTCTGTGTTTTTTCCACTAAAAAGAAACATTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTACAAAATGAAATGGTCTCC</pcr_primer_p1>
		<pcr_primer_p2>GAGAGCATGAAAACTGCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ACTACAAAATGAAATGGTCTCCAGAAGAGTACGGTAACATCACAAGTCTTCAGATTCCGTTTGGAACACTTTGGAAACCAGATATTCTGTTGTTTAATAGTGCAAATGAACATTTTGATTCAAGTTTTCCGGTGAATATGGTAGTTTCCAATGATGGGAATGTCCTGTTTGCGCCACCAGGTTTTCGAAGTTTTTTTTTCAAATTCTGAATTGTTTTAATTTTTCAGGCATTATGCAGTTTTCATGCTCTC</canonical_amplicon>
		<polymorphic_amplicon>ACTACAAAATGAAATGGTCTCCAGAAGAGTACGGTAACATCACAAGTCTTCAGATTCCGTTTGGAACACTTTGGAAACCAGATATTCTGTTGTTTAATAGTGCAAATGAACATTTTGATTCAAGTTTTCCGGTGAATATGGTAGTTTCCAATGATGGGAATGTCCTGTTTGCGCCACCAGGTTTTCGAAGWTTTTTTTTCAAATTCTGAATTGTTTTAATTTTTCAGGCATTATGCAGTTTTCATGCTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39404</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>42752</contig_pos>
        <strand>+</strand>
        <context>CTCTCTGTCT[G/T]YTTCTTTGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCACAAGTTGATCTTCTTACCGTACTCTCCGCCATCATAACTCTCTGTCT</left_flank>
        <right_flank>CTTCTTTGTTCTCTTCGAGTCGTCGGAACGATTTGCGTCTCTCTTTTAGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACGATATGTGTTTTTTACAACTTTTCTGCCCATGTGGTGAACTCAAAATTTTACCCTCCGGATTCCGTTTCTCAAAAAAGTCATTCCGGAAGTCTCTGCATTGTGGGGCCCTTATATTACAGGTTTTAAAAAATCAATCAAAAACAATTAAGTTTTTTCAGCTGCTCATCTATCGGAACTATCCTGTACTATGCCCAAGAATTGTGCACAATATCATTTTGCATACGCAGTTGTTGGAGAGCTTCCCGCTTTCGTTATCGCCTGGATCAGTTTGGTGGATTATGTCGCACAGGCGGGACTATTTTGTAAAGCATGGGCAGATCATTTTGTGAGATTCTCATCAATTCGAAATAGATCCAGTCATTCTTTTCCAGAATCTTCTCTTCCGTGGCCTTCCTGCCAAATCGTTGACTTTTGACGTCTTCTCTCCGGATTCCTCAATTCTCTCCCCACAAGTTGATCTTCTTACCGTACTCTCCGCCATCATAACTCTCTGTCTGCTTCTTTGTTCTCTTCGAGTCGTCGGAACGATTTGCGTCTCTCTTTTAGCTGTAACACTCCTGATTGCTGCTTCATGTACTATGGTTTCATTCTTCCACTCGGACCCAGAGAACTGGATCAAGGCAGAGTTCTTCCATTATGGATATAAAGGGGTTTGTTCTTCCATTACGGATATGAGACTAGCAACTGATTTCAAAAAAGTTTTAGGTGCTCTACTCGATTTGTGCTCTTTGTGCGTGTTATACTGGAATCGAAAGTACATCTTGTCTTTTGGAAGAAACGAAGAATCCAAGAAAGCGAATTTCTGGAGTTTTATCCTTTTTAGTTTTGGTTCTCACAACTATTTTCTTCATTTTGGCAATTACATTTAGGTGAATCTTCTTGATTTTGAGAAAGAATTTTTTGTAATTTTTGACATTAAAATGTTCCCGAAGATACCCTAGAACCTGTAATAGAAAGACCCTCTTTCAACTTTGAGCCAATTTATCTCATTTTCTGT</canonical>
            <polymorphic>ACGATATGTGTTTTTTACAACTTTTCTGCCCATGTGGTGAACTCAAAATTTTACCCTCCGGATTCCGTTTCTCAAAAAAGTCATTCCGGAAGTCTCTGCATTGTGGGGCCCTTATATTACAGGTTTTAAAAAATCAATCAAAAACAATTAAGTTTTTTCAGCTGCTCATCTATCGGAACTATCCTGTACTATGCCCAAGAATTGTGCACAATATCATTTTGCATACGCAGTTGTTGGAGAGCTTCCCGCTTTCGTTATCGCCTGGATCAGTTTGGTGGATTATGTCGCACAGGCGGGACTATTTTGTAAAGCATGGGCAGATCATTTTGTGAGATTCTCATCAATTCGAAATAGATCCAGTCATTCTTTTCCAGAATCTTCTCTTCCGTGGCCTTCCTGCCAAATCGTTGACTTTTGACGTCTTCTCTCCGGATTCCTCAATTCTCTCCCCACAAGTTGATCTTCTTACCGTACTCTCCGCCATCATAACTCTCTGTCTKCTTCTTTGTTCTCTTCGAGTCGTCGGAACGATTTGCGTCTCTCTTTTAGCTGTAACACTCCTGATTGCTGCTTCATGTACTATGGTTTCATTCTTCCACTCGGACCCAGAGAACTGGATCAAGGCAGAGTTCTTCCATTATGGATATAAAGGGGTTTGTTCTTCCATTACGGATATGAGACTAGCAACTGATTTCAAAAAAGTTTTAGGTGCTCTACTCGATTTGTGCTCTTTGTGCGTGTTATACTGGAATCGAAAGTACATCTTGTCTTTTGGAAGAAACGAAGAATCCAAGAAAGCGAATTTCTGGAGTTTTATCCTTTTTAGTTTTGGTTCTCACAACTATTTTCTTCATTTTGGCAATTACATTTAGGTGAATCTTCTTGATTTTGAGAAAGAATTTTTTGTAATTTTTGACATTAAAATGTTCCCGAAGATACCCTAGAACCTGTAATAGAAAGACCCTCTTTCAACTTTGAGCCAATTTATCTCATTTTCTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTTTTGACGTCTTCTCTCC</pcr_primer_p1>
		<pcr_primer_p2>ACAAACCCCTTTATATCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACTTTTGACGTCTTCTCTCCGGATTCCTCAATTCTCTCCCCACAAGTTGATCTTCTTACCGTACTCTCCGCCATCATAACTCTCTGTCTGCTTCTTTGTTCTCTTCGAGTCGTCGGAACGATTTGCGTCTCTCTTTTAGCTGTAACACTCCTGATTGCTGCTTCATGTACTATGGTTTCATTCTTCCACTCGGACCCAGAGAACTGGATCAAGGCAGAGTTCTTCCATTATGGATATAAAGGGGTTTGT</canonical_amplicon>
		<polymorphic_amplicon>GACTTTTGACGTCTTCTCTCCGGATTCCTCAATTCTCTCCCCACAAGTTGATCTTCTTACCGTACTCTCCGCCATCATAACTCTCTGTCTKCTTCTTTGTTCTCTTCGAGTCGTCGGAACGATTTGCGTCTCTCTTTTAGCTGTAACACTCCTGATTGCTGCTTCATGTACTATGGTTTCATTCTTCCACTCGGACCCAGAGAACTGGATCAAGGCAGAGTTCTTCCATTATGGATATAAAGGGGTTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39405</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>42753</contig_pos>
        <strand>+</strand>
        <context>TCTCTGTCTK[C/T]TTCTTTGTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CACAAGTTGATCTTCTTACCGTACTCTCCGCCATCATAACTCTCTGTCTG</left_flank>
        <right_flank>TTCTTTGTTCTCTTCGAGTCGTCGGAACGATTTGCGTCTCTCTTTTAGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGATATGTGTTTTTTACAACTTTTCTGCCCATGTGGTGAACTCAAAATTTTACCCTCCGGATTCCGTTTCTCAAAAAAGTCATTCCGGAAGTCTCTGCATTGTGGGGCCCTTATATTACAGGTTTTAAAAAATCAATCAAAAACAATTAAGTTTTTTCAGCTGCTCATCTATCGGAACTATCCTGTACTATGCCCAAGAATTGTGCACAATATCATTTTGCATACGCAGTTGTTGGAGAGCTTCCCGCTTTCGTTATCGCCTGGATCAGTTTGGTGGATTATGTCGCACAGGCGGGACTATTTTGTAAAGCATGGGCAGATCATTTTGTGAGATTCTCATCAATTCGAAATAGATCCAGTCATTCTTTTCCAGAATCTTCTCTTCCGTGGCCTTCCTGCCAAATCGTTGACTTTTGACGTCTTCTCTCCGGATTCCTCAATTCTCTCCCCACAAGTTGATCTTCTTACCGTACTCTCCGCCATCATAACTCTCTGTCTGCTTCTTTGTTCTCTTCGAGTCGTCGGAACGATTTGCGTCTCTCTTTTAGCTGTAACACTCCTGATTGCTGCTTCATGTACTATGGTTTCATTCTTCCACTCGGACCCAGAGAACTGGATCAAGGCAGAGTTCTTCCATTATGGATATAAAGGGGTTTGTTCTTCCATTACGGATATGAGACTAGCAACTGATTTCAAAAAAGTTTTAGGTGCTCTACTCGATTTGTGCTCTTTGTGCGTGTTATACTGGAATCGAAAGTACATCTTGTCTTTTGGAAGAAACGAAGAATCCAAGAAAGCGAATTTCTGGAGTTTTATCCTTTTTAGTTTTGGTTCTCACAACTATTTTCTTCATTTTGGCAATTACATTTAGGTGAATCTTCTTGATTTTGAGAAAGAATTTTTTGTAATTTTTGACATTAAAATGTTCCCGAAGATACCCTAGAACCTGTAATAGAAAGACCCTCTTTCAACTTTGAGCCAATTTATCTCATTTTCTGTG</canonical>
            <polymorphic>CGATATGTGTTTTTTACAACTTTTCTGCCCATGTGGTGAACTCAAAATTTTACCCTCCGGATTCCGTTTCTCAAAAAAGTCATTCCGGAAGTCTCTGCATTGTGGGGCCCTTATATTACAGGTTTTAAAAAATCAATCAAAAACAATTAAGTTTTTTCAGCTGCTCATCTATCGGAACTATCCTGTACTATGCCCAAGAATTGTGCACAATATCATTTTGCATACGCAGTTGTTGGAGAGCTTCCCGCTTTCGTTATCGCCTGGATCAGTTTGGTGGATTATGTCGCACAGGCGGGACTATTTTGTAAAGCATGGGCAGATCATTTTGTGAGATTCTCATCAATTCGAAATAGATCCAGTCATTCTTTTCCAGAATCTTCTCTTCCGTGGCCTTCCTGCCAAATCGTTGACTTTTGACGTCTTCTCTCCGGATTCCTCAATTCTCTCCCCACAAGTTGATCTTCTTACCGTACTCTCCGCCATCATAACTCTCTGTCTGYTTCTTTGTTCTCTTCGAGTCGTCGGAACGATTTGCGTCTCTCTTTTAGCTGTAACACTCCTGATTGCTGCTTCATGTACTATGGTTTCATTCTTCCACTCGGACCCAGAGAACTGGATCAAGGCAGAGTTCTTCCATTATGGATATAAAGGGGTTTGTTCTTCCATTACGGATATGAGACTAGCAACTGATTTCAAAAAAGTTTTAGGTGCTCTACTCGATTTGTGCTCTTTGTGCGTGTTATACTGGAATCGAAAGTACATCTTGTCTTTTGGAAGAAACGAAGAATCCAAGAAAGCGAATTTCTGGAGTTTTATCCTTTTTAGTTTTGGTTCTCACAACTATTTTCTTCATTTTGGCAATTACATTTAGGTGAATCTTCTTGATTTTGAGAAAGAATTTTTTGTAATTTTTGACATTAAAATGTTCCCGAAGATACCCTAGAACCTGTAATAGAAAGACCCTCTTTCAACTTTGAGCCAATTTATCTCATTTTCTGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACTTTTGACGTCTTCTCTCC</pcr_primer_p1>
		<pcr_primer_p2>ACAAACCCCTTTATATCCATAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GACTTTTGACGTCTTCTCTCCGGATTCCTCAATTCTCTCCCCACAAGTTGATCTTCTTACCGTACTCTCCGCCATCATAACTCTCTGTCTGCTTCTTTGTTCTCTTCGAGTCGTCGGAACGATTTGCGTCTCTCTTTTAGCTGTAACACTCCTGATTGCTGCTTCATGTACTATGGTTTCATTCTTCCACTCGGACCCAGAGAACTGGATCAAGGCAGAGTTCTTCCATTATGGATATAAAGGGGTTTGT</canonical_amplicon>
		<polymorphic_amplicon>GACTTTTGACGTCTTCTCTCCGGATTCCTCAATTCTCTCCCCACAAGTTGATCTTCTTACCGTACTCTCCGCCATCATAACTCTCTGTCTGYTTCTTTGTTCTCTTCGAGTCGTCGGAACGATTTGCGTCTCTCTTTTAGCTGTAACACTCCTGATTGCTGCTTCATGTACTATGGTTTCATTCTTCCACTCGGACCCAGAGAACTGGATCAAGGCAGAGTTCTTCCATTATGGATATAAAGGGGTTTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39406</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>44831</contig_pos>
        <strand></strand>
        <context>ggtcaaaaat[A/G]agttttaaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAAT</left_flank>
        <right_flank>AGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGTCAAGTGTCGGAGAACTTTGAACTTTTCGGACTGTGTAAAACAGACCTAGATTGAAAACTTTGCATTCACAGAAATTTTTAAAATTTCCTAGTTTTTCATCTATTTGCCGATTTCTGAAAGACACCCCTTCTTGAATTGTGAAGGTGAAATAAACGGACACAACGGTTGGTCAAAACCGGACCAAAAAAGGGCCAAAGATAAGTTTAGAATGGCCCAAAACGGCTTAAAAATAGGTCGAAAACCGACAAGAAACAGGTTGAGAACTTGTCGAAAACGGACCAAAAACGGGCAGAAAACTGGCTAAAAACAGGTTGAAAGCTGGTTAAAAACAGGCTGAAAACGGCTTAAAAACGGGCTGAAAGCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGGTCAAAACTGAATTGAATACGGACGGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGTCTGGTTCCATATGCCCGAGATACTTCTACTAAAAGTCCATACTTTGCTGTCCTCCTTTGCACTTTCCTTGTGGCTCTTTGCTCAATGATTCAGAAGACTCTGCTTCTCAATTTTGTAATTTTCATGGCTCCAGCCAAACTAGTCATTACGGTACTATCTCCTCTACAGAGCTTAAAATCTTCCTTCATCCTAGATTCTCCTTGTCTACATCCAACACTATTATCCTGAACAAATCGGCATTCCAGAAGAAACTTCCGGTTATAAATCAATCGGAAAGAAAAGAACACGAGTACATATCGA</canonical>
            <polymorphic>CTGTCAAGTGTCGGAGAACTTTGAACTTTTCGGACTGTGTAAAACAGACCTAGATTGAAAACTTTGCATTCACAGAAATTTTTAAAATTTCCTAGTTTTTCATCTATTTGCCGATTTCTGAAAGACACCCCTTCTTGAATTGTGAAGGTGAAATAAACGGACACAACGGTTGGTCAAAACCGGACCAAAAAAGGGCCAAAGATAAGTTTAGAATGGCCCAAAACGGCTTAAAAATAGGTCGAAAACCGACAAGAAACAGGTTGAGAACTTGTCGAAAACGGACCAAAAACGGGCAGAAAACTGGCTAAAAACAGGTTGAAAGCTGGTTAAAAACAGGCTGAAAACGGCTTAAAAACGGGCTGAAAGCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATRAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGGTCAAAACTGAATTGAATACGGACGGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGTCTGGTTCCATATGCCCGAGATACTTCTACTAAAAGTCCATACTTTGCTGTCCTCCTTTGCACTTTCCTTGTGGCTCTTTGCTCAATGATTCAGAAGACTCTGCTTCTCAATTTTGTAATTTTCATGGCTCCAGCCAAACTAGTCATTACGGTACTATCTCCTCTACAGAGCTTAAAATCTTCCTTCATCCTAGATTCTCCTTGTCTACATCCAACACTATTATCCTGAACAAATCGGCATTCCAGAAGAAACTTCCGGTTATAAATCAATCGGAAAGAAAAGAACACGAGTACATATCGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGAAATAAACGGACACAA</pcr_primer_p1>
		<pcr_primer_p2>ACGATCTGGAATTTTTAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>554</pcr_amplicon_size>
		<canonical_amplicon>GGTGAAATAAACGGACACAACGGTTGGTCAAAACCGGACCAAAAAAGGGCCAAAGATAAGTTTAGAATGGCCCAAAACGGCTTAAAAATAGGTCGAAAACCGACAAGAAACAGGTTGAGAACTTGTCGAAAACGGACCAAAAACGGGCAGAAAACTGGCTAAAAACAGGTTGAAAGCTGGTTAAAAACAGGCTGAAAACGGCTTAAAAACGGGCTGAAAGCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGGTCAAAACTGAATTGAATACGGACGGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGT</canonical_amplicon>
		<polymorphic_amplicon>GGTGAAATAAACGGACACAACGGTTGGTCAAAACCGGACCAAAAAAGGGCCAAAGATAAGTTTAGAATGGCCCAAAACGGCTTAAAAATAGGTCGAAAACCGACAAGAAACAGGTTGAGAACTTGTCGAAAACGGACCAAAAACGGGCAGAAAACTGGCTAAAAACAGGTTGAAAGCTGGTTAAAAACAGGCTGAAAACGGCTTAAAAACGGGCTGAAAGCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATRAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGGTCAAAACTGAATTGAATACGGACGGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39407</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>44878</contig_pos>
        <strand></strand>
        <context>tgaaatggtc[G/A]aaattgaccg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTC</left_flank>
        <right_flank>AAATTGACCGAAAACGGACCAACAACGGGTCAAAACTGAATTGAATACGG</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCTAGATTGAAAACTTTGCATTCACAGAAATTTTTAAAATTTCCTAGTTTTTCATCTATTTGCCGATTTCTGAAAGACACCCCTTCTTGAATTGTGAAGGTGAAATAAACGGACACAACGGTTGGTCAAAACCGGACCAAAAAAGGGCCAAAGATAAGTTTAGAATGGCCCAAAACGGCTTAAAAATAGGTCGAAAACCGACAAGAAACAGGTTGAGAACTTGTCGAAAACGGACCAAAAACGGGCAGAAAACTGGCTAAAAACAGGTTGAAAGCTGGTTAAAAACAGGCTGAAAACGGCTTAAAAACGGGCTGAAAGCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGGTCAAAACTGAATTGAATACGGACGGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGTCTGGTTCCATATGCCCGAGATACTTCTACTAAAAGTCCATACTTTGCTGTCCTCCTTTGCACTTTCCTTGTGGCTCTTTGCTCAATGATTCAGAAGACTCTGCTTCTCAATTTTGTAATTTTCATGGCTCCAGCCAAACTAGTCATTACGGTACTATCTCCTCTACAGAGCTTAAAATCTTCCTTCATCCTAGATTCTCCTTGTCTACATCCAACACTATTATCCTGAACAAATCGGCATTCCAGAAGAAACTTCCGGTTATAAATCAATCGGAAAGAAAAGAACACGAGTACATATCGATGATGGTGTCTCAGTTGATGATTCCATTTCTTTGATGCCACAAAGAT</canonical>
            <polymorphic>ACCTAGATTGAAAACTTTGCATTCACAGAAATTTTTAAAATTTCCTAGTTTTTCATCTATTTGCCGATTTCTGAAAGACACCCCTTCTTGAATTGTGAAGGTGAAATAAACGGACACAACGGTTGGTCAAAACCGGACCAAAAAAGGGCCAAAGATAAGTTTAGAATGGCCCAAAACGGCTTAAAAATAGGTCGAAAACCGACAAGAAACAGGTTGAGAACTTGTCGAAAACGGACCAAAAACGGGCAGAAAACTGGCTAAAAACAGGTTGAAAGCTGGTTAAAAACAGGCTGAAAACGGCTTAAAAACGGGCTGAAAGCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCRAAATTGACCGAAAACGGACCAACAACGGGTCAAAACTGAATTGAATACGGACGGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGTCTGGTTCCATATGCCCGAGATACTTCTACTAAAAGTCCATACTTTGCTGTCCTCCTTTGCACTTTCCTTGTGGCTCTTTGCTCAATGATTCAGAAGACTCTGCTTCTCAATTTTGTAATTTTCATGGCTCCAGCCAAACTAGTCATTACGGTACTATCTCCTCTACAGAGCTTAAAATCTTCCTTCATCCTAGATTCTCCTTGTCTACATCCAACACTATTATCCTGAACAAATCGGCATTCCAGAAGAAACTTCCGGTTATAAATCAATCGGAAAGAAAAGAACACGAGTACATATCGATGATGGTGTCTCAGTTGATGATTCCATTTCTTTGATGCCACAAAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>452 193 152 121 49 33</canonical_bands>
                <polymorphic_bands>604 193 121 49 33</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGAAATAAACGGACACAA</pcr_primer_p1>
		<pcr_primer_p2>ACGATCTGGAATTTTTAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>554</pcr_amplicon_size>
		<canonical_amplicon>GGTGAAATAAACGGACACAACGGTTGGTCAAAACCGGACCAAAAAAGGGCCAAAGATAAGTTTAGAATGGCCCAAAACGGCTTAAAAATAGGTCGAAAACCGACAAGAAACAGGTTGAGAACTTGTCGAAAACGGACCAAAAACGGGCAGAAAACTGGCTAAAAACAGGTTGAAAGCTGGTTAAAAACAGGCTGAAAACGGCTTAAAAACGGGCTGAAAGCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGGTCAAAACTGAATTGAATACGGACGGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGT</canonical_amplicon>
		<polymorphic_amplicon>GGTGAAATAAACGGACACAACGGTTGGTCAAAACCGGACCAAAAAAGGGCCAAAGATAAGTTTAGAATGGCCCAAAACGGCTTAAAAATAGGTCGAAAACCGACAAGAAACAGGTTGAGAACTTGTCGAAAACGGACCAAAAACGGGCAGAAAACTGGCTAAAAACAGGTTGAAAGCTGGTTAAAAACAGGCTGAAAACGGCTTAAAAACGGGCTGAAAGCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCRAAATTGACCGAAAACGGACCAACAACGGGTCAAAACTGAATTGAATACGGACGGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39408</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>44907</contig_pos>
        <strand></strand>
        <context>ccaacaacgg[G/A]tcaaaactra</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>AAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGG</left_flank>
        <right_flank>TCAAAACTGAATTGAATACGGACGGAAAACGAGCAAAAAAATAGGTTAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTTTTAAAATTTCCTAGTTTTTCATCTATTTGCCGATTTCTGAAAGACACCCCTTCTTGAATTGTGAAGGTGAAATAAACGGACACAACGGTTGGTCAAAACCGGACCAAAAAAGGGCCAAAGATAAGTTTAGAATGGCCCAAAACGGCTTAAAAATAGGTCGAAAACCGACAAGAAACAGGTTGAGAACTTGTCGAAAACGGACCAAAAACGGGCAGAAAACTGGCTAAAAACAGGTTGAAAGCTGGTTAAAAACAGGCTGAAAACGGCTTAAAAACGGGCTGAAAGCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGGTCAAAACTGAATTGAATACGGACGGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGTCTGGTTCCATATGCCCGAGATACTTCTACTAAAAGTCCATACTTTGCTGTCCTCCTTTGCACTTTCCTTGTGGCTCTTTGCTCAATGATTCAGAAGACTCTGCTTCTCAATTTTGTAATTTTCATGGCTCCAGCCAAACTAGTCATTACGGTACTATCTCCTCTACAGAGCTTAAAATCTTCCTTCATCCTAGATTCTCCTTGTCTACATCCAACACTATTATCCTGAACAAATCGGCATTCCAGAAGAAACTTCCGGTTATAAATCAATCGGAAAGAAAAGAACACGAGTACATATCGATGATGGTGTCTCAGTTGATGATTCCATTTCTTTGATGCCACAAAGATCTAAAAGAGCAGACGATGATGAATCAGAA</canonical>
            <polymorphic>AATTTTTAAAATTTCCTAGTTTTTCATCTATTTGCCGATTTCTGAAAGACACCCCTTCTTGAATTGTGAAGGTGAAATAAACGGACACAACGGTTGGTCAAAACCGGACCAAAAAAGGGCCAAAGATAAGTTTAGAATGGCCCAAAACGGCTTAAAAATAGGTCGAAAACCGACAAGAAACAGGTTGAGAACTTGTCGAAAACGGACCAAAAACGGGCAGAAAACTGGCTAAAAACAGGTTGAAAGCTGGTTAAAAACAGGCTGAAAACGGCTTAAAAACGGGCTGAAAGCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGRTCAAAACTGAATTGAATACGGACGGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGTCTGGTTCCATATGCCCGAGATACTTCTACTAAAAGTCCATACTTTGCTGTCCTCCTTTGCACTTTCCTTGTGGCTCTTTGCTCAATGATTCAGAAGACTCTGCTTCTCAATTTTGTAATTTTCATGGCTCCAGCCAAACTAGTCATTACGGTACTATCTCCTCTACAGAGCTTAAAATCTTCCTTCATCCTAGATTCTCCTTGTCTACATCCAACACTATTATCCTGAACAAATCGGCATTCCAGAAGAAACTTCCGGTTATAAATCAATCGGAAAGAAAAGAACACGAGTACATATCGATGATGGTGTCTCAGTTGATGATTCCATTTCTTTGATGCCACAAAGATCTAAAAGAGCAGACGATGATGAATCAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>426 151 132 115 98 78</canonical_bands>
                <polymorphic_bands>426 229 132 115 98</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTGAAATAAACGGACACAA</pcr_primer_p1>
		<pcr_primer_p2>ACGATCTGGAATTTTTAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>554</pcr_amplicon_size>
		<canonical_amplicon>GGTGAAATAAACGGACACAACGGTTGGTCAAAACCGGACCAAAAAAGGGCCAAAGATAAGTTTAGAATGGCCCAAAACGGCTTAAAAATAGGTCGAAAACCGACAAGAAACAGGTTGAGAACTTGTCGAAAACGGACCAAAAACGGGCAGAAAACTGGCTAAAAACAGGTTGAAAGCTGGTTAAAAACAGGCTGAAAACGGCTTAAAAACGGGCTGAAAGCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGGTCAAAACTGAATTGAATACGGACGGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGT</canonical_amplicon>
		<polymorphic_amplicon>GGTGAAATAAACGGACACAACGGTTGGTCAAAACCGGACCAAAAAAGGGCCAAAGATAAGTTTAGAATGGCCCAAAACGGCTTAAAAATAGGTCGAAAACCGACAAGAAACAGGTTGAGAACTTGTCGAAAACGGACCAAAAACGGGCAGAAAACTGGCTAAAAACAGGTTGAAAGCTGGTTAAAAACAGGCTGAAAACGGCTTAAAAACGGGCTGAAAGCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGRTCAAAACTGAATTGAATACGGACGGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39409</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>44916</contig_pos>
        <strand></strand>
        <context>grtcaaaact[G/A]aattgaatac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGGTCAAAACT</left_flank>
        <right_flank>AATTGAATACGGACGGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTTCCTAGTTTTTCATCTATTTGCCGATTTCTGAAAGACACCCCTTCTTGAATTGTGAAGGTGAAATAAACGGACACAACGGTTGGTCAAAACCGGACCAAAAAAGGGCCAAAGATAAGTTTAGAATGGCCCAAAACGGCTTAAAAATAGGTCGAAAACCGACAAGAAACAGGTTGAGAACTTGTCGAAAACGGACCAAAAACGGGCAGAAAACTGGCTAAAAACAGGTTGAAAGCTGGTTAAAAACAGGCTGAAAACGGCTTAAAAACGGGCTGAAAGCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGGTCAAAACTGAATTGAATACGGACGGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGTCTGGTTCCATATGCCCGAGATACTTCTACTAAAAGTCCATACTTTGCTGTCCTCCTTTGCACTTTCCTTGTGGCTCTTTGCTCAATGATTCAGAAGACTCTGCTTCTCAATTTTGTAATTTTCATGGCTCCAGCCAAACTAGTCATTACGGTACTATCTCCTCTACAGAGCTTAAAATCTTCCTTCATCCTAGATTCTCCTTGTCTACATCCAACACTATTATCCTGAACAAATCGGCATTCCAGAAGAAACTTCCGGTTATAAATCAATCGGAAAGAAAAGAACACGAGTACATATCGATGATGGTGTCTCAGTTGATGATTCCATTTCTTTGATGCCACAAAGATCTAAAAGAGCAGACGATGATGAATCAGAAGTCAGTCAT</canonical>
            <polymorphic>AATTTCCTAGTTTTTCATCTATTTGCCGATTTCTGAAAGACACCCCTTCTTGAATTGTGAAGGTGAAATAAACGGACACAACGGTTGGTCAAAACCGGACCAAAAAAGGGCCAAAGATAAGTTTAGAATGGCCCAAAACGGCTTAAAAATAGGTCGAAAACCGACAAGAAACAGGTTGAGAACTTGTCGAAAACGGACCAAAAACGGGCAGAAAACTGGCTAAAAACAGGTTGAAAGCTGGTTAAAAACAGGCTGAAAACGGCTTAAAAACGGGCTGAAAGCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGGTCAAAACTRAATTGAATACGGACGGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGTCTGGTTCCATATGCCCGAGATACTTCTACTAAAAGTCCATACTTTGCTGTCCTCCTTTGCACTTTCCTTGTGGCTCTTTGCTCAATGATTCAGAAGACTCTGCTTCTCAATTTTGTAATTTTCATGGCTCCAGCCAAACTAGTCATTACGGTACTATCTCCTCTACAGAGCTTAAAATCTTCCTTCATCCTAGATTCTCCTTGTCTACATCCAACACTATTATCCTGAACAAATCGGCATTCCAGAAGAAACTTCCGGTTATAAATCAATCGGAAAGAAAAGAACACGAGTACATATCGATGATGGTGTCTCAGTTGATGATTCCATTTCTTTGATGCCACAAAGATCTAAAAGAGCAGACGATGATGAATCAGAAGTCAGTCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGAAATAAACGGACACAA</pcr_primer_p1>
		<pcr_primer_p2>ACGATCTGGAATTTTTAATTTTT</pcr_primer_p2>
		<pcr_amplicon_size>554</pcr_amplicon_size>
		<canonical_amplicon>GGTGAAATAAACGGACACAACGGTTGGTCAAAACCGGACCAAAAAAGGGCCAAAGATAAGTTTAGAATGGCCCAAAACGGCTTAAAAATAGGTCGAAAACCGACAAGAAACAGGTTGAGAACTTGTCGAAAACGGACCAAAAACGGGCAGAAAACTGGCTAAAAACAGGTTGAAAGCTGGTTAAAAACAGGCTGAAAACGGCTTAAAAACGGGCTGAAAGCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGGTCAAAACTGAATTGAATACGGACGGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGT</canonical_amplicon>
		<polymorphic_amplicon>GGTGAAATAAACGGACACAACGGTTGGTCAAAACCGGACCAAAAAAGGGCCAAAGATAAGTTTAGAATGGCCCAAAACGGCTTAAAAATAGGTCGAAAACCGACAAGAAACAGGTTGAGAACTTGTCGAAAACGGACCAAAAACGGGCAGAAAACTGGCTAAAAACAGGTTGAAAGCTGGTTAAAAACAGGCTGAAAACGGCTTAAAAACGGGCTGAAAGCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGGTCAAAACTRAATTGAATACGGACGGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39410</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>45005</contig_pos>
        <strand>+</strand>
        <context>CCCTCCATCT[C/T]AAAAAAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCT</left_flank>
        <right_flank>AAAAAAAATTAAAAATTCCAGATCGTCTGGTTCCATATGCCCGAGATACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAACCGGACCAAAAAAGGGCCAAAGATAAGTTTAGAATGGCCCAAAACGGCTTAAAAATAGGTCGAAAACCGACAAGAAACAGGTTGAGAACTTGTCGAAAACGGACCAAAAACGGGCAGAAAACTGGCTAAAAACAGGTTGAAAGCTGGTTAAAAACAGGCTGAAAACGGCTTAAAAACGGGCTGAAAGCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGGTCAAAACTGAATTGAATACGGACGGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTAAAAAAAAATTAAAAATTCCAGATCGTCTGGTTCCATATGCCCGAGATACTTCTACTAAAAGTCCATACTTTGCTGTCCTCCTTTGCACTTTCCTTGTGGCTCTTTGCTCAATGATTCAGAAGACTCTGCTTCTCAATTTTGTAATTTTCATGGCTCCAGCCAAACTAGTCATTACGGTACTATCTCCTCTACAGAGCTTAAAATCTTCCTTCATCCTAGATTCTCCTTGTCTACATCCAACACTATTATCCTGAACAAATCGGCATTCCAGAAGAAACTTCCGGTTATAAATCAATCGGAAAGAAAAGAACACGAGTACATATCGATGATGGTGTCTCAGTTGATGATTCCATTTCTTTGATGCCACAAAGATCTAAAAGAGCAGACGATGATGAATCAGAAGTCAGTCATTCGACGTTTGATACAACGGCGTTTTTGTATATGAAAGCTACGAAAATGGAGACGGAGAGATTGCAGAGGAGATTGGAGAAGGTGAGAGG</canonical>
            <polymorphic>CAAAACCGGACCAAAAAAGGGCCAAAGATAAGTTTAGAATGGCCCAAAACGGCTTAAAAATAGGTCGAAAACCGACAAGAAACAGGTTGAGAACTTGTCGAAAACGGACCAAAAACGGGCAGAAAACTGGCTAAAAACAGGTTGAAAGCTGGTTAAAAACAGGCTGAAAACGGCTTAAAAACGGGCTGAAAGCTGGCCAAAAAACTAGATTTAAATGATCGAAAACTGACCAAAAACGGACCAAAAACGGGCAGAAAACTGTGAAAAACAGGTTGAAAACGGCTTAAAAATGACCAATAACGGTACAAAAATGCTGGTCAAAAATAAGTTTTAAATAATTGAAAACGGGCAAAAAATCAGTTTGAAATGGTCGAAATTGACCGAAAACGGACCAACAACGGGTCAAAACTGAATTGAATACGGACGGAAAACGAGCAAAAAAATAGGTTAAAATGGTCAAAAACGGCATCCAAACACAGGCAGAAAGCTCCCTCCATCTYAAAAAAAATTAAAAATTCCAGATCGTCTGGTTCCATATGCCCGAGATACTTCTACTAAAAGTCCATACTTTGCTGTCCTCCTTTGCACTTTCCTTGTGGCTCTTTGCTCAATGATTCAGAAGACTCTGCTTCTCAATTTTGTAATTTTCATGGCTCCAGCCAAACTAGTCATTACGGTACTATCTCCTCTACAGAGCTTAAAATCTTCCTTCATCCTAGATTCTCCTTGTCTACATCCAACACTATTATCCTGAACAAATCGGCATTCCAGAAGAAACTTCCGGTTATAAATCAATCGGAAAGAAAAGAACACGAGTACATATCGATGATGGTGTCTCAGTTGATGATTCCATTTCTTTGATGCCACAAAGATCTAAAAGAGCAGACGATGATGAATCAGAAGTCAGTCATTCGACGTTTGATACAACGGCGTTTTTGTATATGAAAGCTACGAAAATGGAGACGGAGAGATTGCAGAGGAGATTGGAGAAGGTGAGAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGAAATAAACGGACACAA</pcr_primer_p1>
		<pcr_primer_p2>CAGCAAAGTATGGACTTTTAGTAG</pcr_primer_p2>
		<pcr_amplicon_size>603</pcr_amplicon_size>
		<canonical_amplicon>TAAAAAAAAATTAAAAATTCCAGATCGTCTGGTTCCATATGCCCGAGATACTTCTACTAAAAGTCCATACTTTGCTG</canonical_amplicon>
		<polymorphic_amplicon>TYAAAAAAAATTAAAAATTCCAGATCGTCTGGTTCCATATGCCCGAGATACTTCTACTAAAAGTCCATACTTTGCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39411</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>45789</contig_pos>
        <strand></strand>
        <context>gtgcatcagg[G/C]cattactagy</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>TGAGTTATCTAGGCCATCATGGTCAGGAAACACAACAGGTGTGCATCAGG</left_flank>
        <right_flank>CATTACTAGCCCATTTACCATGGTGGCTCAAAAACTCAACTTGCAAAAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATAAATCAATCGGAAAGAAAAGAACACGAGTACATATCGATGATGGTGTCTCAGTTGATGATTCCATTTCTTTGATGCCACAAAGATCTAAAAGAGCAGACGATGATGAATCAGAAGTCAGTCATTCGACGTTTGATACAACGGCGTTTTTGTATATGAAAGCTACGAAAATGGAGACGGAGAGATTGCAGAGGAGATTGGAGAAGGTGAGAGGCTTACTGTAGCACAGTTGTAACCAGTTTGTGATTTTCGCTACGTTTGAACGAGATTTCAATATATTTCGATCGGTGTCGAAAATCAGACACTCCGATTTCATGTGAGGAATTGTATGGCCTAACTTTCTCGACATGGTTTTTCTAGAGAACCGTAGTTGATGGCCACCAATTTTCATATCCACATGGTGCGTTTTCTAGGCCATTTTAACATGGTTGCCTAACTTTTGCAAGTTGAGTTATCTAGGCCATCATGGTCAGGAAACACAACAGGTGTGCATCAGGGCATTACTAGCCCATTTACCATGGTGGCTCAAAAACTCAACTTGCAAAAATTAGGCCGCCATGCTGAACCGGCCTAGAACTCACTGAGCCGAACGTTCAAAAACACACACTGGTAACAAAAAATGAATTGAAATTTCAAATTACTGAGAAATCGAAACTAGTGTTTTTTTTTTCTAAAACTTAGAATTTTCGGATTGTCCTCATGGAATTTCTGAGACTTGAGAATATTGAAAAAAGTTTTTTTTTAATTCATTGAATTTCTGAATTTCCAAATTTTCAGAAGTGGTCCAACTTCTGGAAATCCTGGATTTTCCGACTCTTCTGGGAATTCTGGATTTTTGAATTTCTGAACTTCCAAGTTTCTGAATTTCCAAATTTGTGGTTTTCTGAATTCTGAATTTCTGAACTTGTGATGTTCTGAATTTAAATTCTGTATTACAGGAAGACAATGAAAATGAAGAACGGCAACCAGTTCTTGCCAAATCCGTATCCCAATACCAT</canonical>
            <polymorphic>TTATAAATCAATCGGAAAGAAAAGAACACGAGTACATATCGATGATGGTGTCTCAGTTGATGATTCCATTTCTTTGATGCCACAAAGATCTAAAAGAGCAGACGATGATGAATCAGAAGTCAGTCATTCGACGTTTGATACAACGGCGTTTTTGTATATGAAAGCTACGAAAATGGAGACGGAGAGATTGCAGAGGAGATTGGAGAAGGTGAGAGGCTTACTGTAGCACAGTTGTAACCAGTTTGTGATTTTCGCTACGTTTGAACGAGATTTCAATATATTTCGATCGGTGTCGAAAATCAGACACTCCGATTTCATGTGAGGAATTGTATGGCCTAACTTTCTCGACATGGTTTTTCTAGAGAACCGTAGTTGATGGCCACCAATTTTCATATCCACATGGTGCGTTTTCTAGGCCATTTTAACATGGTTGCCTAACTTTTGCAAGTTGAGTTATCTAGGCCATCATGGTCAGGAAACACAACAGGTGTGCATCAGGSCATTACTAGCCCATTTACCATGGTGGCTCAAAAACTCAACTTGCAAAAATTAGGCCGCCATGCTGAACCGGCCTAGAACTCACTGAGCCGAACGTTCAAAAACACACACTGGTAACAAAAAATGAATTGAAATTTCAAATTACTGAGAAATCGAAACTAGTGTTTTTTTTTTCTAAAACTTAGAATTTTCGGATTGTCCTCATGGAATTTCTGAGACTTGAGAATATTGAAAAAAGTTTTTTTTTAATTCATTGAATTTCTGAATTTCCAAATTTTCAGAAGTGGTCCAACTTCTGGAAATCCTGGATTTTCCGACTCTTCTGGGAATTCTGGATTTTTGAATTTCTGAACTTCCAAGTTTCTGAATTTCCAAATTTGTGGTTTTCTGAATTCTGAATTTCTGAACTTGTGATGTTCTGAATTTAAATTCTGTATTACAGGAAGACAATGAAAATGAAGAACGGCAACCAGTTCTTGCCAAATCCGTATCCCAATACCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>506 432 62</canonical_bands>
                <polymorphic_bands>568 432</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACACTCCGATTTCATGTGAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTTACCAGTGTGTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>317</pcr_amplicon_size>
		<canonical_amplicon>ACACTCCGATTTCATGTGAGGAATTGTATGGCCTAACTTTCTCGACATGGTTTTTCTAGAGAACCGTAGTTGATGGCCACCAATTTTCATATCCACATGGTGCGTTTTCTAGGCCATTTTAACATGGTTGCCTAACTTTTGCAAGTTGAGTTATCTAGGCCATCATGGTCAGGAAACACAACAGGTGTGCATCAGGGCATTACTAGCCCATTTACCATGGTGGCTCAAAAACTCAACTTGCAAAAATTAGGCCGCCATGCTGAACCGGCCTAGAACTCACTGAGCCGAACGTTCAAAAACACACACTGGTAACAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACACTCCGATTTCATGTGAGGAATTGTATGGCCTAACTTTCTCGACATGGTTTTTCTAGAGAACCGTAGTTGATGGCCACCAATTTTCATATCCACATGGTGCGTTTTCTAGGCCATTTTAACATGGTTGCCTAACTTTTGCAAGTTGAGTTATCTAGGCCATCATGGTCAGGAAACACAACAGGTGTGCATCAGGSCATTACTAGCCCATTTACCATGGTGGCTCAAAAACTCAACTTGCAAAAATTAGGCCGCCATGCTGAACCGGCCTAGAACTCACTGAGCCGAACGTTCAAAAACACACACTGGTAACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39412</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>45799</contig_pos>
        <strand></strand>
        <context>scattactag[C/T]ccatttacca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGCCATCATGGTCAGGAAACACAACAGGTGTGCATCAGGGCATTACTAG</left_flank>
        <right_flank>CCATTTACCATGGTGGCTCAAAAACTCAACTTGCAAAAATTAGGCCGCCA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCGGAAAGAAAAGAACACGAGTACATATCGATGATGGTGTCTCAGTTGATGATTCCATTTCTTTGATGCCACAAAGATCTAAAAGAGCAGACGATGATGAATCAGAAGTCAGTCATTCGACGTTTGATACAACGGCGTTTTTGTATATGAAAGCTACGAAAATGGAGACGGAGAGATTGCAGAGGAGATTGGAGAAGGTGAGAGGCTTACTGTAGCACAGTTGTAACCAGTTTGTGATTTTCGCTACGTTTGAACGAGATTTCAATATATTTCGATCGGTGTCGAAAATCAGACACTCCGATTTCATGTGAGGAATTGTATGGCCTAACTTTCTCGACATGGTTTTTCTAGAGAACCGTAGTTGATGGCCACCAATTTTCATATCCACATGGTGCGTTTTCTAGGCCATTTTAACATGGTTGCCTAACTTTTGCAAGTTGAGTTATCTAGGCCATCATGGTCAGGAAACACAACAGGTGTGCATCAGGGCATTACTAGCCCATTTACCATGGTGGCTCAAAAACTCAACTTGCAAAAATTAGGCCGCCATGCTGAACCGGCCTAGAACTCACTGAGCCGAACGTTCAAAAACACACACTGGTAACAAAAAATGAATTGAAATTTCAAATTACTGAGAAATCGAAACTAGTGTTTTTTTTTTCTAAAACTTAGAATTTTCGGATTGTCCTCATGGAATTTCTGAGACTTGAGAATATTGAAAAAAGTTTTTTTTTAATTCATTGAATTTCTGAATTTCCAAATTTTCAGAAGTGGTCCAACTTCTGGAAATCCTGGATTTTCCGACTCTTCTGGGAATTCTGGATTTTTGAATTTCTGAACTTCCAAGTTTCTGAATTTCCAAATTTGTGGTTTTCTGAATTCTGAATTTCTGAACTTGTGATGTTCTGAATTTAAATTCTGTATTACAGGAAGACAATGAAAATGAAGAACGGCAACCAGTTCTTGCCAAATCCGTATCCCAATACCATTCAATGGATC</canonical>
            <polymorphic>ATCGGAAAGAAAAGAACACGAGTACATATCGATGATGGTGTCTCAGTTGATGATTCCATTTCTTTGATGCCACAAAGATCTAAAAGAGCAGACGATGATGAATCAGAAGTCAGTCATTCGACGTTTGATACAACGGCGTTTTTGTATATGAAAGCTACGAAAATGGAGACGGAGAGATTGCAGAGGAGATTGGAGAAGGTGAGAGGCTTACTGTAGCACAGTTGTAACCAGTTTGTGATTTTCGCTACGTTTGAACGAGATTTCAATATATTTCGATCGGTGTCGAAAATCAGACACTCCGATTTCATGTGAGGAATTGTATGGCCTAACTTTCTCGACATGGTTTTTCTAGAGAACCGTAGTTGATGGCCACCAATTTTCATATCCACATGGTGCGTTTTCTAGGCCATTTTAACATGGTTGCCTAACTTTTGCAAGTTGAGTTATCTAGGCCATCATGGTCAGGAAACACAACAGGTGTGCATCAGGGCATTACTAGYCCATTTACCATGGTGGCTCAAAAACTCAACTTGCAAAAATTAGGCCGCCATGCTGAACCGGCCTAGAACTCACTGAGCCGAACGTTCAAAAACACACACTGGTAACAAAAAATGAATTGAAATTTCAAATTACTGAGAAATCGAAACTAGTGTTTTTTTTTTCTAAAACTTAGAATTTTCGGATTGTCCTCATGGAATTTCTGAGACTTGAGAATATTGAAAAAAGTTTTTTTTTAATTCATTGAATTTCTGAATTTCCAAATTTTCAGAAGTGGTCCAACTTCTGGAAATCCTGGATTTTCCGACTCTTCTGGGAATTCTGGATTTTTGAATTTCTGAACTTCCAAGTTTCTGAATTTCCAAATTTGTGGTTTTCTGAATTCTGAATTTCTGAACTTGTGATGTTCTGAATTTAAATTCTGTATTACAGGAAGACAATGAAAATGAAGAACGGCAACCAGTTCTTGCCAAATCCGTATCCCAATACCATTCAATGGATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>496 442 62</canonical_bands>
                <polymorphic_bands>558 442</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>423 154 118 52 47 46 45 37 28 17 17 16</canonical_bands>
                <polymorphic_bands>423 154 118 64 52 46 45 37 28 17 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACACTCCGATTTCATGTGAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTTACCAGTGTGTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>317</pcr_amplicon_size>
		<canonical_amplicon>ACACTCCGATTTCATGTGAGGAATTGTATGGCCTAACTTTCTCGACATGGTTTTTCTAGAGAACCGTAGTTGATGGCCACCAATTTTCATATCCACATGGTGCGTTTTCTAGGCCATTTTAACATGGTTGCCTAACTTTTGCAAGTTGAGTTATCTAGGCCATCATGGTCAGGAAACACAACAGGTGTGCATCAGGGCATTACTAGCCCATTTACCATGGTGGCTCAAAAACTCAACTTGCAAAAATTAGGCCGCCATGCTGAACCGGCCTAGAACTCACTGAGCCGAACGTTCAAAAACACACACTGGTAACAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACACTCCGATTTCATGTGAGGAATTGTATGGCCTAACTTTCTCGACATGGTTTTTCTAGAGAACCGTAGTTGATGGCCACCAATTTTCATATCCACATGGTGCGTTTTCTAGGCCATTTTAACATGGTTGCCTAACTTTTGCAAGTTGAGTTATCTAGGCCATCATGGTCAGGAAACACAACAGGTGTGCATCAGGGCATTACTAGYCCATTTACCATGGTGGCTCAAAAACTCAACTTGCAAAAATTAGGCCGCCATGCTGAACCGGCCTAGAACTCACTGAGCCGAACGTTCAAAAACACACACTGGTAACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39413</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>45817</contig_pos>
        <strand></strand>
        <context>ccatggtggc[T/C]caaaaactca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AACACAACAGGTGTGCATCAGGGCATTACTAGCCCATTTACCATGGTGGC</left_flank>
        <right_flank>CAAAAACTCAACTTGCAAAAATTAGGCCGCCATGCTGAACCGGCCTAGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGAGTACATATCGATGATGGTGTCTCAGTTGATGATTCCATTTCTTTGATGCCACAAAGATCTAAAAGAGCAGACGATGATGAATCAGAAGTCAGTCATTCGACGTTTGATACAACGGCGTTTTTGTATATGAAAGCTACGAAAATGGAGACGGAGAGATTGCAGAGGAGATTGGAGAAGGTGAGAGGCTTACTGTAGCACAGTTGTAACCAGTTTGTGATTTTCGCTACGTTTGAACGAGATTTCAATATATTTCGATCGGTGTCGAAAATCAGACACTCCGATTTCATGTGAGGAATTGTATGGCCTAACTTTCTCGACATGGTTTTTCTAGAGAACCGTAGTTGATGGCCACCAATTTTCATATCCACATGGTGCGTTTTCTAGGCCATTTTAACATGGTTGCCTAACTTTTGCAAGTTGAGTTATCTAGGCCATCATGGTCAGGAAACACAACAGGTGTGCATCAGGGCATTACTAGCCCATTTACCATGGTGGCTCAAAAACTCAACTTGCAAAAATTAGGCCGCCATGCTGAACCGGCCTAGAACTCACTGAGCCGAACGTTCAAAAACACACACTGGTAACAAAAAATGAATTGAAATTTCAAATTACTGAGAAATCGAAACTAGTGTTTTTTTTTTCTAAAACTTAGAATTTTCGGATTGTCCTCATGGAATTTCTGAGACTTGAGAATATTGAAAAAAGTTTTTTTTTAATTCATTGAATTTCTGAATTTCCAAATTTTCAGAAGTGGTCCAACTTCTGGAAATCCTGGATTTTCCGACTCTTCTGGGAATTCTGGATTTTTGAATTTCTGAACTTCCAAGTTTCTGAATTTCCAAATTTGTGGTTTTCTGAATTCTGAATTTCTGAACTTGTGATGTTCTGAATTTAAATTCTGTATTACAGGAAGACAATGAAAATGAAGAACGGCAACCAGTTCTTGCCAAATCCGTATCCCAATACCATTCAATGGATCAGCAAGTTCAGAAAAATA</canonical>
            <polymorphic>CGAGTACATATCGATGATGGTGTCTCAGTTGATGATTCCATTTCTTTGATGCCACAAAGATCTAAAAGAGCAGACGATGATGAATCAGAAGTCAGTCATTCGACGTTTGATACAACGGCGTTTTTGTATATGAAAGCTACGAAAATGGAGACGGAGAGATTGCAGAGGAGATTGGAGAAGGTGAGAGGCTTACTGTAGCACAGTTGTAACCAGTTTGTGATTTTCGCTACGTTTGAACGAGATTTCAATATATTTCGATCGGTGTCGAAAATCAGACACTCCGATTTCATGTGAGGAATTGTATGGCCTAACTTTCTCGACATGGTTTTTCTAGAGAACCGTAGTTGATGGCCACCAATTTTCATATCCACATGGTGCGTTTTCTAGGCCATTTTAACATGGTTGCCTAACTTTTGCAAGTTGAGTTATCTAGGCCATCATGGTCAGGAAACACAACAGGTGTGCATCAGGGCATTACTAGCCCATTTACCATGGTGGCYCAAAAACTCAACTTGCAAAAATTAGGCCGCCATGCTGAACCGGCCTAGAACTCACTGAGCCGAACGTTCAAAAACACACACTGGTAACAAAAAATGAATTGAAATTTCAAATTACTGAGAAATCGAAACTAGTGTTTTTTTTTTCTAAAACTTAGAATTTTCGGATTGTCCTCATGGAATTTCTGAGACTTGAGAATATTGAAAAAAGTTTTTTTTTAATTCATTGAATTTCTGAATTTCCAAATTTTCAGAAGTGGTCCAACTTCTGGAAATCCTGGATTTTCCGACTCTTCTGGGAATTCTGGATTTTTGAATTTCTGAACTTCCAAGTTTCTGAATTTCCAAATTTGTGGTTTTCTGAATTCTGAATTTCTGAACTTGTGATGTTCTGAATTTAAATTCTGTATTACAGGAAGACAATGAAAATGAAGAACGGCAACCAGTTCTTGCCAAATCCGTATCCCAATACCATTCAATGGATCAGCAAGTTCAGAAAAATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>441 136 118 52 47 46 45 37 28 17 17 16</canonical_bands>
                <polymorphic_bands>441 136 118 52 47 46 45 45 37 17 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACACTCCGATTTCATGTGAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTGTTACCAGTGTGTGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>317</pcr_amplicon_size>
		<canonical_amplicon>ACACTCCGATTTCATGTGAGGAATTGTATGGCCTAACTTTCTCGACATGGTTTTTCTAGAGAACCGTAGTTGATGGCCACCAATTTTCATATCCACATGGTGCGTTTTCTAGGCCATTTTAACATGGTTGCCTAACTTTTGCAAGTTGAGTTATCTAGGCCATCATGGTCAGGAAACACAACAGGTGTGCATCAGGGCATTACTAGCCCATTTACCATGGTGGCTCAAAAACTCAACTTGCAAAAATTAGGCCGCCATGCTGAACCGGCCTAGAACTCACTGAGCCGAACGTTCAAAAACACACACTGGTAACAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACACTCCGATTTCATGTGAGGAATTGTATGGCCTAACTTTCTCGACATGGTTTTTCTAGAGAACCGTAGTTGATGGCCACCAATTTTCATATCCACATGGTGCGTTTTCTAGGCCATTTTAACATGGTTGCCTAACTTTTGCAAGTTGAGTTATCTAGGCCATCATGGTCAGGAAACACAACAGGTGTGCATCAGGGCATTACTAGCCCATTTACCATGGTGGCYCAAAAACTCAACTTGCAAAAATTAGGCCGCCATGCTGAACCGGCCTAGAACTCACTGAGCCGAACGTTCAAAAACACACACTGGTAACAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39414</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>45923</contig_pos>
        <strand>+</strand>
        <context>GAATTGAAAT[C/T]TCAAATTACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAGCCGAACGTTCAAAAACACACACTGGTAACAAAAAATGAATTGAAAT</left_flank>
        <right_flank>TCAAATTACTGAGAAATCGAAACTAGTGTTTTTTTTTTCTAAAACTTAGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGATACAACGGCGTTTTTGTATATGAAAGCTACGAAAATGGAGACGGAGAGATTGCAGAGGAGATTGGAGAAGGTGAGAGGCTTACTGTAGCACAGTTGTAACCAGTTTGTGATTTTCGCTACGTTTGAACGAGATTTCAATATATTTCGATCGGTGTCGAAAATCAGACACTCCGATTTCATGTGAGGAATTGTATGGCCTAACTTTCTCGACATGGTTTTTCTAGAGAACCGTAGTTGATGGCCACCAATTTTCATATCCACATGGTGCGTTTTCTAGGCCATTTTAACATGGTTGCCTAACTTTTGCAAGTTGAGTTATCTAGGCCATCATGGTCAGGAAACACAACAGGTGTGCATCAGGGCATTACTAGCCCATTTACCATGGTGGCTCAAAAACTCAACTTGCAAAAATTAGGCCGCCATGCTGAACCGGCCTAGAACTCACTGAGCCGAACGTTCAAAAACACACACTGGTAACAAAAAATGAATTGAAATTTCAAATTACTGAGAAATCGAAACTAGTGTTTTTTTTTTCTAAAACTTAGAATTTTCGGATTGTCCTCATGGAATTTCTGAGACTTGAGAATATTGAAAAAAGTTTTTTTTTAATTCATTGAATTTCTGAATTTCCAAATTTTCAGAAGTGGTCCAACTTCTGGAAATCCTGGATTTTCCGACTCTTCTGGGAATTCTGGATTTTTGAATTTCTGAACTTCCAAGTTTCTGAATTTCCAAATTTGTGGTTTTCTGAATTCTGAATTTCTGAACTTGTGATGTTCTGAATTTAAATTCTGTATTACAGGAAGACAATGAAAATGAAGAACGGCAACCAGTTCTTGCCAAATCCGTATCCCAATACCATTCAATGGATCAGCAAGTTCAGAAAAATAGAAAACCAAGCATCAAAAAACATGAGCATAACTGTGTAGCTGAGCAATGTGGAGCTGACAATGATGATGGTTTCCCACTCACCTTTCAGATAATTTCTCATAAAAT</canonical>
            <polymorphic>TTGATACAACGGCGTTTTTGTATATGAAAGCTACGAAAATGGAGACGGAGAGATTGCAGAGGAGATTGGAGAAGGTGAGAGGCTTACTGTAGCACAGTTGTAACCAGTTTGTGATTTTCGCTACGTTTGAACGAGATTTCAATATATTTCGATCGGTGTCGAAAATCAGACACTCCGATTTCATGTGAGGAATTGTATGGCCTAACTTTCTCGACATGGTTTTTCTAGAGAACCGTAGTTGATGGCCACCAATTTTCATATCCACATGGTGCGTTTTCTAGGCCATTTTAACATGGTTGCCTAACTTTTGCAAGTTGAGTTATCTAGGCCATCATGGTCAGGAAACACAACAGGTGTGCATCAGGGCATTACTAGCCCATTTACCATGGTGGCTCAAAAACTCAACTTGCAAAAATTAGGCCGCCATGCTGAACCGGCCTAGAACTCACTGAGCCGAACGTTCAAAAACACACACTGGTAACAAAAAATGAATTGAAATYTCAAATTACTGAGAAATCGAAACTAGTGTTTTTTTTTTCTAAAACTTAGAATTTTCGGATTGTCCTCATGGAATTTCTGAGACTTGAGAATATTGAAAAAAGTTTTTTTTTAATTCATTGAATTTCTGAATTTCCAAATTTTCAGAAGTGGTCCAACTTCTGGAAATCCTGGATTTTCCGACTCTTCTGGGAATTCTGGATTTTTGAATTTCTGAACTTCCAAGTTTCTGAATTTCCAAATTTGTGGTTTTCTGAATTCTGAATTTCTGAACTTGTGATGTTCTGAATTTAAATTCTGTATTACAGGAAGACAATGAAAATGAAGAACGGCAACCAGTTCTTGCCAAATCCGTATCCCAATACCATTCAATGGATCAGCAAGTTCAGAAAAATAGAAAACCAAGCATCAAAAAACATGAGCATAACTGTGTAGCTGAGCAATGTGGAGCTGACAATGATGATGGTTTCCCACTCACCTTTCAGATAATTTCTCATAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>496 209 55 53 49 24 24 22 16 15 8 8 8 7 6</canonical_bands>
                <polymorphic_bands>549 209 55 49 24 24 22 16 15 8 8 8 7 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>194 190 163 77 60 55 46 40 24 24 22 16 15 15 9 8 8 8 7 7 6 6</canonical_bands>
                <polymorphic_bands>194 190 163 77 60 55 46 40 24 24 22 16 15 15 13 9 8 8 8 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACACTCCGATTTCATGTGAG</pcr_primer_p1>
		<pcr_primer_p2>GGACAATCCGAAAATTCTAAG</pcr_primer_p2>
		<pcr_amplicon_size>396</pcr_amplicon_size>
		<canonical_amplicon>ACACTCCGATTTCATGTGAGGAATTGTATGGCCTAACTTTCTCGACATGGTTTTTCTAGAGAACCGTAGTTGATGGCCACCAATTTTCATATCCACATGGTGCGTTTTCTAGGCCATTTTAACATGGTTGCCTAACTTTTGCAAGTTGAGTTATCTAGGCCATCATGGTCAGGAAACACAACAGGTGTGCATCAGGGCATTACTAGCCCATTTACCATGGTGGCTCAAAAACTCAACTTGCAAAAATTAGGCCGCCATGCTGAACCGGCCTAGAACTCACTGAGCCGAACGTTCAAAAACACACACTGGTAACAAAAAATGAATTGAAATTTCAAATTACTGAGAAATCGAAACTAGTGTTTTTTTTTTCTAAAACTTAGAATTTTCGGATTGTCC</canonical_amplicon>
		<polymorphic_amplicon>ACACTCCGATTTCATGTGAGGAATTGTATGGCCTAACTTTCTCGACATGGTTTTTCTAGAGAACCGTAGTTGATGGCCACCAATTTTCATATCCACATGGTGCGTTTTCTAGGCCATTTTAACATGGTTGCCTAACTTTTGCAAGTTGAGTTATCTAGGCCATCATGGTCAGGAAACACAACAGGTGTGCATCAGGGCATTACTAGCCCATTTACCATGGTGGCTCAAAAACTCAACTTGCAAAAATTAGGCCGCCATGCTGAACCGGCCTAGAACTCACTGAGCCGAACGTTCAAAAACACACACTGGTAACAAAAAATGAATTGAAATYTCAAATTACTGAGAAATCGAAACTAGTGTTTTTTTTTTCTAAAACTTAGAATTTTCGGATTGTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39415</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>46106</contig_pos>
        <strand>+</strand>
        <context>ATTTTCCGAC[A/T]CTTCTGGGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCCAAATTTTCAGAAGTGGTCCAACTTCTGGAAATCCTGGATTTTCCGAC</left_flank>
        <right_flank>CTTCTGGGAATTCTGGATTTTTGAATTTCTGAACTTCCAAGTTTCTGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTGAGGAATTGTATGGCCTAACTTTCTCGACATGGTTTTTCTAGAGAACCGTAGTTGATGGCCACCAATTTTCATATCCACATGGTGCGTTTTCTAGGCCATTTTAACATGGTTGCCTAACTTTTGCAAGTTGAGTTATCTAGGCCATCATGGTCAGGAAACACAACAGGTGTGCATCAGGGCATTACTAGCCCATTTACCATGGTGGCTCAAAAACTCAACTTGCAAAAATTAGGCCGCCATGCTGAACCGGCCTAGAACTCACTGAGCCGAACGTTCAAAAACACACACTGGTAACAAAAAATGAATTGAAATTTCAAATTACTGAGAAATCGAAACTAGTGTTTTTTTTTTCTAAAACTTAGAATTTTCGGATTGTCCTCATGGAATTTCTGAGACTTGAGAATATTGAAAAAAGTTTTTTTTTAATTCATTGAATTTCTGAATTTCCAAATTTTCAGAAGTGGTCCAACTTCTGGAAATCCTGGATTTTCCGACTCTTCTGGGAATTCTGGATTTTTGAATTTCTGAACTTCCAAGTTTCTGAATTTCCAAATTTGTGGTTTTCTGAATTCTGAATTTCTGAACTTGTGATGTTCTGAATTTAAATTCTGTATTACAGGAAGACAATGAAAATGAAGAACGGCAACCAGTTCTTGCCAAATCCGTATCCCAATACCATTCAATGGATCAGCAAGTTCAGAAAAATAGAAAACCAAGCATCAAAAAACATGAGCATAACTGTGTAGCTGAGCAATGTGGAGCTGACAATGATGATGGTTTCCCACTCACCTTTCAGATAATTTCTCATAAAATATTTTTCAGACTACAACTCCCAAGAAGTTCATTTATTCGCCAATGAGGAACCTGAACTCCCCTTCTTTTCCACCTTCTCCTCATCAGCCCCACGGCCACCATCTCCAGATGTTAGCTTCTCCAATTTCCATAAATCTCAACGTCTTCTATTCCTTTTCTGTTTTATGACTTCTGCATTCTCAA</canonical>
            <polymorphic>TGTGAGGAATTGTATGGCCTAACTTTCTCGACATGGTTTTTCTAGAGAACCGTAGTTGATGGCCACCAATTTTCATATCCACATGGTGCGTTTTCTAGGCCATTTTAACATGGTTGCCTAACTTTTGCAAGTTGAGTTATCTAGGCCATCATGGTCAGGAAACACAACAGGTGTGCATCAGGGCATTACTAGCCCATTTACCATGGTGGCTCAAAAACTCAACTTGCAAAAATTAGGCCGCCATGCTGAACCGGCCTAGAACTCACTGAGCCGAACGTTCAAAAACACACACTGGTAACAAAAAATGAATTGAAATTTCAAATTACTGAGAAATCGAAACTAGTGTTTTTTTTTTCTAAAACTTAGAATTTTCGGATTGTCCTCATGGAATTTCTGAGACTTGAGAATATTGAAAAAAGTTTTTTTTTAATTCATTGAATTTCTGAATTTCCAAATTTTCAGAAGTGGTCCAACTTCTGGAAATCCTGGATTTTCCGACWCTTCTGGGAATTCTGGATTTTTGAATTTCTGAACTTCCAAGTTTCTGAATTTCCAAATTTGTGGTTTTCTGAATTCTGAATTTCTGAACTTGTGATGTTCTGAATTTAAATTCTGTATTACAGGAAGACAATGAAAATGAAGAACGGCAACCAGTTCTTGCCAAATCCGTATCCCAATACCATTCAATGGATCAGCAAGTTCAGAAAAATAGAAAACCAAGCATCAAAAAACATGAGCATAACTGTGTAGCTGAGCAATGTGGAGCTGACAATGATGATGGTTTCCCACTCACCTTTCAGATAATTTCTCATAAAATATTTTTCAGACTACAACTCCCAAGAAGTTCATTTATTCGCCAATGAGGAACCTGAACTCCCCTTCTTTTCCACCTTCTCCTCATCAGCCCCACGGCCACCATCTCCAGATGTTAGCTTCTCCAATTTCCATAAATCTCAACGTCTTCTATTCCTTTTCTGTTTTATGACTTCTGCATTCTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTGAGACTTGAGAATATTGAA</pcr_primer_p1>
		<pcr_primer_p2>CATTTTCATTGTCTTCCTGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTCTGAGACTTGAGAATATTGAAAAAAGTTTTTTTTTAATTCATTGAATTTCTGAATTTCCAAATTTTCAGAAGTGGTCCAACTTCTGGAAATCCTGGATTTTCCGACTCTTCTGGGAATTCTGGATTTTTGAATTTCTGAACTTCCAAGTTTCTGAATTTCCAAATTTGTGGTTTTCTGAATTCTGAATTTCTGAACTTGTGATGTTCTGAATTTAAATTCTGTATTACAGGAAGACAATGAAAATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTGAGACTTGAGAATATTGAAAAAAGTTTTTTTTTAATTCATTGAATTTCTGAATTTCCAAATTTTCAGAAGTGGTCCAACTTCTGGAAATCCTGGATTTTCCGACWCTTCTGGGAATTCTGGATTTTTGAATTTCTGAACTTCCAAGTTTCTGAATTTCCAAATTTGTGGTTTTCTGAATTCTGAATTTCTGAACTTGTGATGTTCTGAATTTAAATTCTGTATTACAGGAAGACAATGAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39416</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>46122</contig_pos>
        <strand></strand>
        <context>GGGAATTCTG[G/A]ATTTTYGAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGGTCCAACTTCTGGAAATCCTGGATTTTCCGACTCTTCTGGGAATTCTG</left_flank>
        <right_flank>ATTTTTGAATTTCTGAACTTCCAAGTTTCTGAATTTCCAAATTTGTGGTT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCCTAACTTTCTCGACATGGTTTTTCTAGAGAACCGTAGTTGATGGCCACCAATTTTCATATCCACATGGTGCGTTTTCTAGGCCATTTTAACATGGTTGCCTAACTTTTGCAAGTTGAGTTATCTAGGCCATCATGGTCAGGAAACACAACAGGTGTGCATCAGGGCATTACTAGCCCATTTACCATGGTGGCTCAAAAACTCAACTTGCAAAAATTAGGCCGCCATGCTGAACCGGCCTAGAACTCACTGAGCCGAACGTTCAAAAACACACACTGGTAACAAAAAATGAATTGAAATTTCAAATTACTGAGAAATCGAAACTAGTGTTTTTTTTTTCTAAAACTTAGAATTTTCGGATTGTCCTCATGGAATTTCTGAGACTTGAGAATATTGAAAAAAGTTTTTTTTTAATTCATTGAATTTCTGAATTTCCAAATTTTCAGAAGTGGTCCAACTTCTGGAAATCCTGGATTTTCCGACTCTTCTGGGAATTCTGGATTTTTGAATTTCTGAACTTCCAAGTTTCTGAATTTCCAAATTTGTGGTTTTCTGAATTCTGAATTTCTGAACTTGTGATGTTCTGAATTTAAATTCTGTATTACAGGAAGACAATGAAAATGAAGAACGGCAACCAGTTCTTGCCAAATCCGTATCCCAATACCATTCAATGGATCAGCAAGTTCAGAAAAATAGAAAACCAAGCATCAAAAAACATGAGCATAACTGTGTAGCTGAGCAATGTGGAGCTGACAATGATGATGGTTTCCCACTCACCTTTCAGATAATTTCTCATAAAATATTTTTCAGACTACAACTCCCAAGAAGTTCATTTATTCGCCAATGAGGAACCTGAACTCCCCTTCTTTTCCACCTTCTCCTCATCAGCCCCACGGCCACCATCTCCAGATGTTAGCTTCTCCAATTTCCATAAATCTCAACGTCTTCTATTCCTTTTCTGTTTTATGACTTCTGCATTCTCAACTTTTCTTCGAAACTT</canonical>
            <polymorphic>GCCTAACTTTCTCGACATGGTTTTTCTAGAGAACCGTAGTTGATGGCCACCAATTTTCATATCCACATGGTGCGTTTTCTAGGCCATTTTAACATGGTTGCCTAACTTTTGCAAGTTGAGTTATCTAGGCCATCATGGTCAGGAAACACAACAGGTGTGCATCAGGGCATTACTAGCCCATTTACCATGGTGGCTCAAAAACTCAACTTGCAAAAATTAGGCCGCCATGCTGAACCGGCCTAGAACTCACTGAGCCGAACGTTCAAAAACACACACTGGTAACAAAAAATGAATTGAAATTTCAAATTACTGAGAAATCGAAACTAGTGTTTTTTTTTTCTAAAACTTAGAATTTTCGGATTGTCCTCATGGAATTTCTGAGACTTGAGAATATTGAAAAAAGTTTTTTTTTAATTCATTGAATTTCTGAATTTCCAAATTTTCAGAAGTGGTCCAACTTCTGGAAATCCTGGATTTTCCGACTCTTCTGGGAATTCTGRATTTTTGAATTTCTGAACTTCCAAGTTTCTGAATTTCCAAATTTGTGGTTTTCTGAATTCTGAATTTCTGAACTTGTGATGTTCTGAATTTAAATTCTGTATTACAGGAAGACAATGAAAATGAAGAACGGCAACCAGTTCTTGCCAAATCCGTATCCCAATACCATTCAATGGATCAGCAAGTTCAGAAAAATAGAAAACCAAGCATCAAAAAACATGAGCATAACTGTGTAGCTGAGCAATGTGGAGCTGACAATGATGATGGTTTCCCACTCACCTTTCAGATAATTTCTCATAAAATATTTTTCAGACTACAACTCCCAAGAAGTTCATTTATTCGCCAATGAGGAACCTGAACTCCCCTTCTTTTCCACCTTCTCCTCATCAGCCCCACGGCCACCATCTCCAGATGTTAGCTTCTCCAATTTCCATAAATCTCAACGTCTTCTATTCCTTTTCTGTTTTATGACTTCTGCATTCTCAACTTTTCTTCGAAACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>409 321 114 94 36 15 11</canonical_bands>
                <polymorphic_bands>445 321 114 94 15 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTGAGACTTGAGAATATTGAA</pcr_primer_p1>
		<pcr_primer_p2>CATTTTCATTGTCTTCCTGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTCTGAGACTTGAGAATATTGAAAAAAGTTTTTTTTTAATTCATTGAATTTCTGAATTTCCAAATTTTCAGAAGTGGTCCAACTTCTGGAAATCCTGGATTTTCCGACTCTTCTGGGAATTCTGGATTTTTGAATTTCTGAACTTCCAAGTTTCTGAATTTCCAAATTTGTGGTTTTCTGAATTCTGAATTTCTGAACTTGTGATGTTCTGAATTTAAATTCTGTATTACAGGAAGACAATGAAAATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTGAGACTTGAGAATATTGAAAAAAGTTTTTTTTTAATTCATTGAATTTCTGAATTTCCAAATTTTCAGAAGTGGTCCAACTTCTGGAAATCCTGGATTTTCCGACTCTTCTGGGAATTCTGRATTTTTGAATTTCTGAACTTCCAAGTTTCTGAATTTCCAAATTTGTGGTTTTCTGAATTCTGAATTTCTGAACTTGTGATGTTCTGAATTTAAATTCTGTATTACAGGAAGACAATGAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39417</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>46128</contig_pos>
        <strand></strand>
        <context>TCTGRATTTT[T/C]GAATTTCTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AACTTCTGGAAATCCTGGATTTTCCGACTCTTCTGGGAATTCTGGATTTT</left_flank>
        <right_flank>GAATTTCTGAACTTCCAAGTTTCTGAATTTCCAAATTTGTGGTTTTCTGA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTCTCGACATGGTTTTTCTAGAGAACCGTAGTTGATGGCCACCAATTTTCATATCCACATGGTGCGTTTTCTAGGCCATTTTAACATGGTTGCCTAACTTTTGCAAGTTGAGTTATCTAGGCCATCATGGTCAGGAAACACAACAGGTGTGCATCAGGGCATTACTAGCCCATTTACCATGGTGGCTCAAAAACTCAACTTGCAAAAATTAGGCCGCCATGCTGAACCGGCCTAGAACTCACTGAGCCGAACGTTCAAAAACACACACTGGTAACAAAAAATGAATTGAAATTTCAAATTACTGAGAAATCGAAACTAGTGTTTTTTTTTTCTAAAACTTAGAATTTTCGGATTGTCCTCATGGAATTTCTGAGACTTGAGAATATTGAAAAAAGTTTTTTTTTAATTCATTGAATTTCTGAATTTCCAAATTTTCAGAAGTGGTCCAACTTCTGGAAATCCTGGATTTTCCGACTCTTCTGGGAATTCTGGATTTTTGAATTTCTGAACTTCCAAGTTTCTGAATTTCCAAATTTGTGGTTTTCTGAATTCTGAATTTCTGAACTTGTGATGTTCTGAATTTAAATTCTGTATTACAGGAAGACAATGAAAATGAAGAACGGCAACCAGTTCTTGCCAAATCCGTATCCCAATACCATTCAATGGATCAGCAAGTTCAGAAAAATAGAAAACCAAGCATCAAAAAACATGAGCATAACTGTGTAGCTGAGCAATGTGGAGCTGACAATGATGATGGTTTCCCACTCACCTTTCAGATAATTTCTCATAAAATATTTTTCAGACTACAACTCCCAAGAAGTTCATTTATTCGCCAATGAGGAACCTGAACTCCCCTTCTTTTCCACCTTCTCCTCATCAGCCCCACGGCCACCATCTCCAGATGTTAGCTTCTCCAATTTCCATAAATCTCAACGTCTTCTATTCCTTTTCTGTTTTATGACTTCTGCATTCTCAACTTTTCTTCGAAACTTTGCGAT</canonical>
            <polymorphic>CTTTCTCGACATGGTTTTTCTAGAGAACCGTAGTTGATGGCCACCAATTTTCATATCCACATGGTGCGTTTTCTAGGCCATTTTAACATGGTTGCCTAACTTTTGCAAGTTGAGTTATCTAGGCCATCATGGTCAGGAAACACAACAGGTGTGCATCAGGGCATTACTAGCCCATTTACCATGGTGGCTCAAAAACTCAACTTGCAAAAATTAGGCCGCCATGCTGAACCGGCCTAGAACTCACTGAGCCGAACGTTCAAAAACACACACTGGTAACAAAAAATGAATTGAAATTTCAAATTACTGAGAAATCGAAACTAGTGTTTTTTTTTTCTAAAACTTAGAATTTTCGGATTGTCCTCATGGAATTTCTGAGACTTGAGAATATTGAAAAAAGTTTTTTTTTAATTCATTGAATTTCTGAATTTCCAAATTTTCAGAAGTGGTCCAACTTCTGGAAATCCTGGATTTTCCGACTCTTCTGGGAATTCTGGATTTTYGAATTTCTGAACTTCCAAGTTTCTGAATTTCCAAATTTGTGGTTTTCTGAATTCTGAATTTCTGAACTTGTGATGTTCTGAATTTAAATTCTGTATTACAGGAAGACAATGAAAATGAAGAACGGCAACCAGTTCTTGCCAAATCCGTATCCCAATACCATTCAATGGATCAGCAAGTTCAGAAAAATAGAAAACCAAGCATCAAAAAACATGAGCATAACTGTGTAGCTGAGCAATGTGGAGCTGACAATGATGATGGTTTCCCACTCACCTTTCAGATAATTTCTCATAAAATATTTTTCAGACTACAACTCCCAAGAAGTTCATTTATTCGCCAATGAGGAACCTGAACTCCCCTTCTTTTCCACCTTCTCCTCATCAGCCCCACGGCCACCATCTCCAGATGTTAGCTTCTCCAATTTCCATAAATCTCAACGTCTTCTATTCCTTTTCTGTTTTATGACTTCTGCATTCTCAACTTTTCTTCGAAACTTTGCGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTGAGACTTGAGAATATTGAA</pcr_primer_p1>
		<pcr_primer_p2>CATTTTCATTGTCTTCCTGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTCTGAGACTTGAGAATATTGAAAAAAGTTTTTTTTTAATTCATTGAATTTCTGAATTTCCAAATTTTCAGAAGTGGTCCAACTTCTGGAAATCCTGGATTTTCCGACTCTTCTGGGAATTCTGGATTTTTGAATTTCTGAACTTCCAAGTTTCTGAATTTCCAAATTTGTGGTTTTCTGAATTCTGAATTTCTGAACTTGTGATGTTCTGAATTTAAATTCTGTATTACAGGAAGACAATGAAAATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTGAGACTTGAGAATATTGAAAAAAGTTTTTTTTTAATTCATTGAATTTCTGAATTTCCAAATTTTCAGAAGTGGTCCAACTTCTGGAAATCCTGGATTTTCCGACTCTTCTGGGAATTCTGGATTTTYGAATTTCTGAACTTCCAAGTTTCTGAATTTCCAAATTTGTGGTTTTCTGAATTCTGAATTTCTGAACTTGTGATGTTCTGAATTTAAATTCTGTATTACAGGAAGACAATGAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39418</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>46156</contig_pos>
        <strand></strand>
        <context>AGTTTCTGAA[T/C]TTCCAARTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCTTCTGGGAATTCTGGATTTTTGAATTTCTGAACTTCCAAGTTTCTGAA</left_flank>
        <right_flank>TTCCAAATTTGTGGTTTTCTGAATTCTGAATTTCTGAACTTGTGATGTTC</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTAGTTGATGGCCACCAATTTTCATATCCACATGGTGCGTTTTCTAGGCCATTTTAACATGGTTGCCTAACTTTTGCAAGTTGAGTTATCTAGGCCATCATGGTCAGGAAACACAACAGGTGTGCATCAGGGCATTACTAGCCCATTTACCATGGTGGCTCAAAAACTCAACTTGCAAAAATTAGGCCGCCATGCTGAACCGGCCTAGAACTCACTGAGCCGAACGTTCAAAAACACACACTGGTAACAAAAAATGAATTGAAATTTCAAATTACTGAGAAATCGAAACTAGTGTTTTTTTTTTCTAAAACTTAGAATTTTCGGATTGTCCTCATGGAATTTCTGAGACTTGAGAATATTGAAAAAAGTTTTTTTTTAATTCATTGAATTTCTGAATTTCCAAATTTTCAGAAGTGGTCCAACTTCTGGAAATCCTGGATTTTCCGACTCTTCTGGGAATTCTGGATTTTTGAATTTCTGAACTTCCAAGTTTCTGAATTTCCAAATTTGTGGTTTTCTGAATTCTGAATTTCTGAACTTGTGATGTTCTGAATTTAAATTCTGTATTACAGGAAGACAATGAAAATGAAGAACGGCAACCAGTTCTTGCCAAATCCGTATCCCAATACCATTCAATGGATCAGCAAGTTCAGAAAAATAGAAAACCAAGCATCAAAAAACATGAGCATAACTGTGTAGCTGAGCAATGTGGAGCTGACAATGATGATGGTTTCCCACTCACCTTTCAGATAATTTCTCATAAAATATTTTTCAGACTACAACTCCCAAGAAGTTCATTTATTCGCCAATGAGGAACCTGAACTCCCCTTCTTTTCCACCTTCTCCTCATCAGCCCCACGGCCACCATCTCCAGATGTTAGCTTCTCCAATTTCCATAAATCTCAACGTCTTCTATTCCTTTTCTGTTTTATGACTTCTGCATTCTCAACTTTTCTTCGAAACTTTGCGATGCCCACGACGACTTGTTGGCTTCTAAGT</canonical>
            <polymorphic>CGTAGTTGATGGCCACCAATTTTCATATCCACATGGTGCGTTTTCTAGGCCATTTTAACATGGTTGCCTAACTTTTGCAAGTTGAGTTATCTAGGCCATCATGGTCAGGAAACACAACAGGTGTGCATCAGGGCATTACTAGCCCATTTACCATGGTGGCTCAAAAACTCAACTTGCAAAAATTAGGCCGCCATGCTGAACCGGCCTAGAACTCACTGAGCCGAACGTTCAAAAACACACACTGGTAACAAAAAATGAATTGAAATTTCAAATTACTGAGAAATCGAAACTAGTGTTTTTTTTTTCTAAAACTTAGAATTTTCGGATTGTCCTCATGGAATTTCTGAGACTTGAGAATATTGAAAAAAGTTTTTTTTTAATTCATTGAATTTCTGAATTTCCAAATTTTCAGAAGTGGTCCAACTTCTGGAAATCCTGGATTTTCCGACTCTTCTGGGAATTCTGGATTTTTGAATTTCTGAACTTCCAAGTTTCTGAAYTTCCAAATTTGTGGTTTTCTGAATTCTGAATTTCTGAACTTGTGATGTTCTGAATTTAAATTCTGTATTACAGGAAGACAATGAAAATGAAGAACGGCAACCAGTTCTTGCCAAATCCGTATCCCAATACCATTCAATGGATCAGCAAGTTCAGAAAAATAGAAAACCAAGCATCAAAAAACATGAGCATAACTGTGTAGCTGAGCAATGTGGAGCTGACAATGATGATGGTTTCCCACTCACCTTTCAGATAATTTCTCATAAAATATTTTTCAGACTACAACTCCCAAGAAGTTCATTTATTCGCCAATGAGGAACCTGAACTCCCCTTCTTTTCCACCTTCTCCTCATCAGCCCCACGGCCACCATCTCCAGATGTTAGCTTCTCCAATTTCCATAAATCTCAACGTCTTCTATTCCTTTTCTGTTTTATGACTTCTGCATTCTCAACTTTTCTTCGAAACTTTGCGATGCCCACGACGACTTGTTGGCTTCTAAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>442 263 55 53 49 24 24 22 16 15 8 8 8 7 6</canonical_bands>
                <polymorphic_bands>442 263 55 53 49 32 24 22 16 15 8 8 7 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>194 163 137 111 77 55 46 40 24 24 22 17 16 15 9 8 8 8 7 7 6 6</canonical_bands>
                <polymorphic_bands>194 163 137 111 77 55 46 40 32 24 22 17 16 15 9 8 8 7 7 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTGAGACTTGAGAATATTGAA</pcr_primer_p1>
		<pcr_primer_p2>CATTTTCATTGTCTTCCTGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTCTGAGACTTGAGAATATTGAAAAAAGTTTTTTTTTAATTCATTGAATTTCTGAATTTCCAAATTTTCAGAAGTGGTCCAACTTCTGGAAATCCTGGATTTTCCGACTCTTCTGGGAATTCTGGATTTTTGAATTTCTGAACTTCCAAGTTTCTGAATTTCCAAATTTGTGGTTTTCTGAATTCTGAATTTCTGAACTTGTGATGTTCTGAATTTAAATTCTGTATTACAGGAAGACAATGAAAATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTGAGACTTGAGAATATTGAAAAAAGTTTTTTTTTAATTCATTGAATTTCTGAATTTCCAAATTTTCAGAAGTGGTCCAACTTCTGGAAATCCTGGATTTTCCGACTCTTCTGGGAATTCTGGATTTTTGAATTTCTGAACTTCCAAGTTTCTGAAYTTCCAAATTTGTGGTTTTCTGAATTCTGAATTTCTGAACTTGTGATGTTCTGAATTTAAATTCTGTATTACAGGAAGACAATGAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39419</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>46163</contig_pos>
        <strand></strand>
        <context>GAAYTTCCAA[A/G]TTTGTGGTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGAATTCTGGATTTTTGAATTTCTGAACTTCCAAGTTTCTGAATTTCCAA</left_flank>
        <right_flank>TTTGTGGTTTTCTGAATTCTGAATTTCTGAACTTGTGATGTTCTGAATTT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATGGCCACCAATTTTCATATCCACATGGTGCGTTTTCTAGGCCATTTTAACATGGTTGCCTAACTTTTGCAAGTTGAGTTATCTAGGCCATCATGGTCAGGAAACACAACAGGTGTGCATCAGGGCATTACTAGCCCATTTACCATGGTGGCTCAAAAACTCAACTTGCAAAAATTAGGCCGCCATGCTGAACCGGCCTAGAACTCACTGAGCCGAACGTTCAAAAACACACACTGGTAACAAAAAATGAATTGAAATTTCAAATTACTGAGAAATCGAAACTAGTGTTTTTTTTTTCTAAAACTTAGAATTTTCGGATTGTCCTCATGGAATTTCTGAGACTTGAGAATATTGAAAAAAGTTTTTTTTTAATTCATTGAATTTCTGAATTTCCAAATTTTCAGAAGTGGTCCAACTTCTGGAAATCCTGGATTTTCCGACTCTTCTGGGAATTCTGGATTTTTGAATTTCTGAACTTCCAAGTTTCTGAATTTCCAAATTTGTGGTTTTCTGAATTCTGAATTTCTGAACTTGTGATGTTCTGAATTTAAATTCTGTATTACAGGAAGACAATGAAAATGAAGAACGGCAACCAGTTCTTGCCAAATCCGTATCCCAATACCATTCAATGGATCAGCAAGTTCAGAAAAATAGAAAACCAAGCATCAAAAAACATGAGCATAACTGTGTAGCTGAGCAATGTGGAGCTGACAATGATGATGGTTTCCCACTCACCTTTCAGATAATTTCTCATAAAATATTTTTCAGACTACAACTCCCAAGAAGTTCATTTATTCGCCAATGAGGAACCTGAACTCCCCTTCTTTTCCACCTTCTCCTCATCAGCCCCACGGCCACCATCTCCAGATGTTAGCTTCTCCAATTTCCATAAATCTCAACGTCTTCTATTCCTTTTCTGTTTTATGACTTCTGCATTCTCAACTTTTCTTCGAAACTTTGCGATGCCCACGACGACTTGTTGGCTTCTAAGTGCCGGAT</canonical>
            <polymorphic>GATGGCCACCAATTTTCATATCCACATGGTGCGTTTTCTAGGCCATTTTAACATGGTTGCCTAACTTTTGCAAGTTGAGTTATCTAGGCCATCATGGTCAGGAAACACAACAGGTGTGCATCAGGGCATTACTAGCCCATTTACCATGGTGGCTCAAAAACTCAACTTGCAAAAATTAGGCCGCCATGCTGAACCGGCCTAGAACTCACTGAGCCGAACGTTCAAAAACACACACTGGTAACAAAAAATGAATTGAAATTTCAAATTACTGAGAAATCGAAACTAGTGTTTTTTTTTTCTAAAACTTAGAATTTTCGGATTGTCCTCATGGAATTTCTGAGACTTGAGAATATTGAAAAAAGTTTTTTTTTAATTCATTGAATTTCTGAATTTCCAAATTTTCAGAAGTGGTCCAACTTCTGGAAATCCTGGATTTTCCGACTCTTCTGGGAATTCTGGATTTTTGAATTTCTGAACTTCCAAGTTTCTGAATTTCCAARTTTGTGGTTTTCTGAATTCTGAATTTCTGAACTTGTGATGTTCTGAATTTAAATTCTGTATTACAGGAAGACAATGAAAATGAAGAACGGCAACCAGTTCTTGCCAAATCCGTATCCCAATACCATTCAATGGATCAGCAAGTTCAGAAAAATAGAAAACCAAGCATCAAAAAACATGAGCATAACTGTGTAGCTGAGCAATGTGGAGCTGACAATGATGATGGTTTCCCACTCACCTTTCAGATAATTTCTCATAAAATATTTTTCAGACTACAACTCCCAAGAAGTTCATTTATTCGCCAATGAGGAACCTGAACTCCCCTTCTTTTCCACCTTCTCCTCATCAGCCCCACGGCCACCATCTCCAGATGTTAGCTTCTCCAATTTCCATAAATCTCAACGTCTTCTATTCCTTTTCTGTTTTATGACTTCTGCATTCTCAACTTTTCTTCGAAACTTTGCGATGCCCACGACGACTTGTTGGCTTCTAAGTGCCGGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>449 256 55 53 49 24 24 22 16 15 8 8 8 7 6</canonical_bands>
                <polymorphic_bands>449 256 55 53 49 24 24 24 22 15 8 8 7 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>194 163 137 118 77 55 46 40 24 24 22 16 15 10 9 8 8 8 7 7 6 6</canonical_bands>
                <polymorphic_bands>194 163 137 118 77 55 46 40 24 24 24 22 15 10 9 8 8 7 7 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCTGAGACTTGAGAATATTGAA</pcr_primer_p1>
		<pcr_primer_p2>CATTTTCATTGTCTTCCTGTAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTCTGAGACTTGAGAATATTGAAAAAAGTTTTTTTTTAATTCATTGAATTTCTGAATTTCCAAATTTTCAGAAGTGGTCCAACTTCTGGAAATCCTGGATTTTCCGACTCTTCTGGGAATTCTGGATTTTTGAATTTCTGAACTTCCAAGTTTCTGAATTTCCAAATTTGTGGTTTTCTGAATTCTGAATTTCTGAACTTGTGATGTTCTGAATTTAAATTCTGTATTACAGGAAGACAATGAAAATG</canonical_amplicon>
		<polymorphic_amplicon>TTTCTGAGACTTGAGAATATTGAAAAAAGTTTTTTTTTAATTCATTGAATTTCTGAATTTCCAAATTTTCAGAAGTGGTCCAACTTCTGGAAATCCTGGATTTTCCGACTCTTCTGGGAATTCTGGATTTTTGAATTTCTGAACTTCCAAGTTTCTGAATTTCCAARTTTGTGGTTTTCTGAATTCTGAATTTCTGAACTTGTGATGTTCTGAATTTAAATTCTGTATTACAGGAAGACAATGAAAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39420</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>50416</contig_pos>
        <strand>+</strand>
        <context>CGCGACGAAT[C/T]CTTGGTATCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTGGCTTTCTAACACTCTCGATTGCTAAGGATTTTTCTCCGCGACGAAT</left_flank>
        <right_flank>CTTGGTATCGATATCGATGAGCACTTGATCGGTGTGGCTCGCAAGAATAT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTGAGAAAAAGCGTTTAGGTATTCTAGAACCAGAGGAGGTTCCCTCAAAGCGGCGAAAGTCTGACAAGGATGACAAAAAAGACGAGAAGAAAACAGGAAAGTCCCCATACAAGGTACGTTGTATAAGTCGAAATTGAATGAGTATTATAAACTTTCAGTAGAAAAAATTCCAGAAAAATCATCACGGCTCTCCGAAGAAGAAGGCTCCACCGTTGACCAAAGAACAAAAAGACGCTGCAGAGTTCCGCAAGAACAAGACAGAGTATTTTAACAGGAAATATCGATACGGAAACTTTGACAGATACTACGGAGTTCGTTTGAATCCTGGAGAATCTGATAAGCGGCTCACAGTCTTCGACAAGCAGTGGTTCGAGCACAAGCAGATTCTTGATATTGGTGAGGAGCAGGAAATTTTTCAGCTCAACAAATAATTTTTCCAGGTTGTAATGTTGGCTTTCTAACACTCTCGATTGCTAAGGATTTTTCTCCGCGACGAATCCTTGGTATCGATATCGATGAGCACTTGATCGGTGTGGCTCGCAAGAATATCCGCCATTATTGTGATCATGAGACAGAAGTAGCTGGAAAATTTCCTGCTTCATTTGGCGTTCAATTTGGTACAATTTCACAAAGAACTGAGGCGCCTCGTTCGTTCTCTACCAAGTTTCCGGATAATATCTGGTTTAAGAAGGAAAATTATGTGATGGAGAATGATGAGATGCTCGATATGATTCAACCTGAATTCGATGTTATCCTCGCTCTTTCGATTACAAAATGGATTCATTTGAATTGGGGAGACGATGGGATGCGACGGTTTTTCAAGAGAGCTTTTGCACAGCTCCATCCAGGTAAGACACATTTTGTTTGTACTTTCAGAAAGTTGGAGAAAGTGCATGCGGACTTCCTCCTACCGTAATCCTTCAAAAATTGTTACTCGTCTAAAATTTGAAATGTTTTCCACAGCCTTGCTGAATGTTCGCACTTTCTATTTGTTTTCAA</canonical>
            <polymorphic>GCTGAGAAAAAGCGTTTAGGTATTCTAGAACCAGAGGAGGTTCCCTCAAAGCGGCGAAAGTCTGACAAGGATGACAAAAAAGACGAGAAGAAAACAGGAAAGTCCCCATACAAGGTACGTTGTATAAGTCGAAATTGAATGAGTATTATAAACTTTCAGTAGAAAAAATTCCAGAAAAATCATCACGGCTCTCCGAAGAAGAAGGCTCCACCGTTGACCAAAGAACAAAAAGACGCTGCAGAGTTCCGCAAGAACAAGACAGAGTATTTTAACAGGAAATATCGATACGGAAACTTTGACAGATACTACGGAGTTCGTTTGAATCCTGGAGAATCTGATAAGCGGCTCACAGTCTTCGACAAGCAGTGGTTCGAGCACAAGCAGATTCTTGATATTGGTGAGGAGCAGGAAATTTTTCAGCTCAACAAATAATTTTTCCAGGTTGTAATGTTGGCTTTCTAACACTCTCGATTGCTAAGGATTTTTCTCCGCGACGAATYCTTGGTATCGATATCGATGAGCACTTGATCGGTGTGGCTCGCAAGAATATCCGCCATTATTGTGATCATGAGACAGAAGTAGCTGGAAAATTTCCTGCTTCATTTGGCGTTCAATTTGGTACAATTTCACAAAGAACTGAGGCGCCTCGTTCGTTCTCTACCAAGTTTCCGGATAATATCTGGTTTAAGAAGGAAAATTATGTGATGGAGAATGATGAGATGCTCGATATGATTCAACCTGAATTCGATGTTATCCTCGCTCTTTCGATTACAAAATGGATTCATTTGAATTGGGGAGACGATGGGATGCGACGGTTTTTCAAGAGAGCTTTTGCACAGCTCCATCCAGGTAAGACACATTTTGTTTGTACTTTCAGAAAGTTGGAGAAAGTGCATGCGGACTTCCTCCTACCGTAATCCTTCAAAAATTGTTACTCGTCTAAAATTTGAAATGTTTTCCACAGCCTTGCTGAATGTTCGCACTTTCTATTTGTTTTCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>321 235 221 112 53 48 10</canonical_bands>
                <polymorphic_bands>347 321 221 53 48 10</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>321 235 221 112 53 48 10</canonical_bands>
                <polymorphic_bands>347 321 221 53 48 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATTTTTCCAGGTTGTAATGTT</pcr_primer_p1>
		<pcr_primer_p2>ATATTATCCGGAAACTTGGTAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAATTTTTCCAGGTTGTAATGTTGGCTTTCTAACACTCTCGATTGCTAAGGATTTTTCTCCGCGACGAATCCTTGGTATCGATATCGATGAGCACTTGATCGGTGTGGCTCGCAAGAATATCCGCCATTATTGTGATCATGAGACAGAAGTAGCTGGAAAATTTCCTGCTTCATTTGGCGTTCAATTTGGTACAATTTCACAAAGAACTGAGGCGCCTCGTTCGTTCTCTACCAAGTTTCCGGATAATAT</canonical_amplicon>
		<polymorphic_amplicon>TAATTTTTCCAGGTTGTAATGTTGGCTTTCTAACACTCTCGATTGCTAAGGATTTTTCTCCGCGACGAATYCTTGGTATCGATATCGATGAGCACTTGATCGGTGTGGCTCGCAAGAATATCCGCCATTATTGTGATCATGAGACAGAAGTAGCTGGAAAATTTCCTGCTTCATTTGGCGTTCAATTTGGTACAATTTCACAAAGAACTGAGGCGCCTCGTTCGTTCTCTACCAAGTTTCCGGATAATAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39421</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>66318</contig_pos>
        <strand>+</strand>
        <context>ACTGACTGAA[A/G]AGAGCTGAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAGACAATGGGATAAACGACATGAGTTTAAAATTGAGGAACTGACTGAA</left_flank>
        <right_flank>AGAGCTGAATAAAAAAATCTGGAAATGAGTAACTAGAATATGAACTCAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATCAGCCATATATTGATAGAGTTCGAAGTTGTTCTTCCGGATGACTTGTTCGGTGAGACAGTCTTCGAAGACGCGGATTGGACAATCGATTTCACGAAGCTTATGAAGAGCATGAATCTGTCTAGTACCAATTACCAACATCTCGGTGTAATGGCGGACGTAGTCGTGGGCCGAACAACGCTTCTGAGCTTGTCTGACGGCTGGAATGGCCGAGGATCTAGACTTGCAGACAGTGTTGGATGGCATAGTATATAATAGGAAGAGAATGAGAGCTGGTATTCAGATCAGAATGAGTTGATGAATGAGTGAACGGTGTTCTCCTCTGCCAAGTGGGCCGGGCTTCGCAATCCAGGTGGGGCTACTCGCATAGNTATATCCGGCGTCTTCACCTATTACGACCCTTTTATGGGGAACATCGGTCTTTTACAGGTAAAGAGGGAATCAAGATTAGACAATGGGATAAACGACATGAGTTTAAAATTGAGGAACTGACTGAAAAGAGCTGAATAAAAAAATCTGGAAATGAGTAACTAGAATATGAACTCAATTGGATTGAAAAAGGAATTCTGAAAATGAGGTATTATTCAGAAAATCGGTATTTGTTTTCTATGTTCTTCTTTTATTTTTATAATTTCAGTCGTTAGTCCAAAGAAACCAAAGAAGGTTAAGAAGGCCGAGGAGGTTAAGGACGATAAGCAGCCACAGCAACCAAAACAACCAATGGTTACAAAGGAGAAGAAGGAGCCAAAGCAGAGAAAGGCATCTAAGCAACCAAAGAAGAATTCGAAAAAGGATTCAATTGAGGCTGAAGAACGCTTCGCCTATGAACCAAAACGTTTGGTAAAGTGTATTATTTGTTTCAAATACTATGTAATATTTTTAAAATATTCTCGAAGATAATGTCAAGACCATCAAAATAAAGGCCAATTCGGTGCTACATCCAGGAATGGTCTTCGCGGACAGAGGGCCATTGGTCATCCACCTCTGCTACGAGTGTC</canonical>
            <polymorphic>TCATCAGCCATATATTGATAGAGTTCGAAGTTGTTCTTCCGGATGACTTGTTCGGTGAGACAGTCTTCGAAGACGCGGATTGGACAATCGATTTCACGAAGCTTATGAAGAGCATGAATCTGTCTAGTACCAATTACCAACATCTCGGTGTAATGGCGGACGTAGTCGTGGGCCGAACAACGCTTCTGAGCTTGTCTGACGGCTGGAATGGCCGAGGATCTAGACTTGCAGACAGTGTTGGATGGCATAGTATATAATAGGAAGAGAATGAGAGCTGGTATTCAGATCAGAATGAGTTGATGAATGAGTGAACGGTGTTCTCCTCTGCCAAGTGGGCCGGGCTTCGCAATCCAGGTGGGGCTACTCGCATAGNTATATCCGGCGTCTTCACCTATTACGACCCTTTTATGGGGAACATCGGTCTTTTACAGGTAAAGAGGGAATCAAGATTAGACAATGGGATAAACGACATGAGTTTAAAATTGAGGAACTGACTGAARAGAGCTGAATAAAAAAATCTGGAAATGAGTAACTAGAATATGAACTCAATTGGATTGAAAAAGGAATTCTGAAAATGAGGTATTATTCAGAAAATCGGTATTTGTTTTCTATGTTCTTCTTTTATTTTTATAATTTCAGTCGTTAGTCCAAAGAAACCAAAGAAGGTTAAGAAGGCCGAGGAGGTTAAGGACGATAAGCAGCCACAGCAACCAAAACAACCAATGGTTACAAAGGAGAAGAAGGAGCCAAAGCAGAGAAAGGCATCTAAGCAACCAAAGAAGAATTCGAAAAAGGATTCAATTGAGGCTGAAGAACGCTTCGCCTATGAACCAAAACGTTTGGTAAAGTGTATTATTTGTTTCAAATACTATGTAATATTTTTAAAATATTCTCGAAGATAATGTCAAGACCATCAAAATAAAGGCCAATTCGGTGCTACATCCAGGAATGGTCTTCGCGGACAGAGGGCCATTGGTCATCCACCTCTGCTACGAGTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTACAGGTAAAGAGGGAATC</pcr_primer_p1>
		<pcr_primer_p2>TCTTAACCTTCTTTGGTTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTTACAGGTAAAGAGGGAATCAAGATTAGACAATGGGATAAACGACATGAGTTTAAAATTGAGGAACTGACTGAAAAGAGCTGAATAAAAAAATCTGGAAATGAGTAACTAGAATATGAACTCAATTGGATTGAAAAAGGAATTCTGAAAATGAGGTATTATTCAGAAAATCGGTATTTGTTTTCTATGTTCTTCTTTTATTTTTATAATTTCAGTCGTTAGTCCAAAGAAACCAAAGAAGGTTAAGA</canonical_amplicon>
		<polymorphic_amplicon>CTTTTACAGGTAAAGAGGGAATCAAGATTAGACAATGGGATAAACGACATGAGTTTAAAATTGAGGAACTGACTGAARAGAGCTGAATAAAAAAATCTGGAAATGAGTAACTAGAATATGAACTCAATTGGATTGAAAAAGGAATTCTGAAAATGAGGTATTATTCAGAAAATCGGTATTTGTTTTCTATGTTCTTCTTTTATTTTTATAATTTCAGTCGTTAGTCCAAAGAAACCAAAGAAGGTTAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39422</snp_id>
        <super_contig>c013600706.Contig3</super_contig>
        <contig_pos>66335</contig_pos>
        <strand>+</strand>
        <context>GAATAAAAAA[A/T]TCTGGAAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGACATGAGTTTAAAATTGAGGAACTGACTGAAAAGAGCTGAATAAAAAA</left_flank>
        <right_flank>TCTGGAAATGAGTAACTAGAATATGAACTCAATTGGATTGAAAAAGGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAGAGTTCGAAGTTGTTCTTCCGGATGACTTGTTCGGTGAGACAGTCTTCGAAGACGCGGATTGGACAATCGATTTCACGAAGCTTATGAAGAGCATGAATCTGTCTAGTACCAATTACCAACATCTCGGTGTAATGGCGGACGTAGTCGTGGGCCGAACAACGCTTCTGAGCTTGTCTGACGGCTGGAATGGCCGAGGATCTAGACTTGCAGACAGTGTTGGATGGCATAGTATATAATAGGAAGAGAATGAGAGCTGGTATTCAGATCAGAATGAGTTGATGAATGAGTGAACGGTGTTCTCCTCTGCCAAGTGGGCCGGGCTTCGCAATCCAGGTGGGGCTACTCGCATAGNTATATCCGGCGTCTTCACCTATTACGACCCTTTTATGGGGAACATCGGTCTTTTACAGGTAAAGAGGGAATCAAGATTAGACAATGGGATAAACGACATGAGTTTAAAATTGAGGAACTGACTGAAAAGAGCTGAATAAAAAAATCTGGAAATGAGTAACTAGAATATGAACTCAATTGGATTGAAAAAGGAATTCTGAAAATGAGGTATTATTCAGAAAATCGGTATTTGTTTTCTATGTTCTTCTTTTATTTTTATAATTTCAGTCGTTAGTCCAAAGAAACCAAAGAAGGTTAAGAAGGCCGAGGAGGTTAAGGACGATAAGCAGCCACAGCAACCAAAACAACCAATGGTTACAAAGGAGAAGAAGGAGCCAAAGCAGAGAAAGGCATCTAAGCAACCAAAGAAGAATTCGAAAAAGGATTCAATTGAGGCTGAAGAACGCTTCGCCTATGAACCAAAACGTTTGGTAAAGTGTATTATTTGTTTCAAATACTATGTAATATTTTTAAAATATTCTCGAAGATAATGTCAAGACCATCAAAATAAAGGCCAATTCGGTGCTACATCCAGGAATGGTCTTCGCGGACAGAGGGCCATTGGTCATCCACCTCTGCTACGAGTGTCGTCTGTTCAATGCATTG</canonical>
            <polymorphic>ATAGAGTTCGAAGTTGTTCTTCCGGATGACTTGTTCGGTGAGACAGTCTTCGAAGACGCGGATTGGACAATCGATTTCACGAAGCTTATGAAGAGCATGAATCTGTCTAGTACCAATTACCAACATCTCGGTGTAATGGCGGACGTAGTCGTGGGCCGAACAACGCTTCTGAGCTTGTCTGACGGCTGGAATGGCCGAGGATCTAGACTTGCAGACAGTGTTGGATGGCATAGTATATAATAGGAAGAGAATGAGAGCTGGTATTCAGATCAGAATGAGTTGATGAATGAGTGAACGGTGTTCTCCTCTGCCAAGTGGGCCGGGCTTCGCAATCCAGGTGGGGCTACTCGCATAGNTATATCCGGCGTCTTCACCTATTACGACCCTTTTATGGGGAACATCGGTCTTTTACAGGTAAAGAGGGAATCAAGATTAGACAATGGGATAAACGACATGAGTTTAAAATTGAGGAACTGACTGAAAAGAGCTGAATAAAAAAWTCTGGAAATGAGTAACTAGAATATGAACTCAATTGGATTGAAAAAGGAATTCTGAAAATGAGGTATTATTCAGAAAATCGGTATTTGTTTTCTATGTTCTTCTTTTATTTTTATAATTTCAGTCGTTAGTCCAAAGAAACCAAAGAAGGTTAAGAAGGCCGAGGAGGTTAAGGACGATAAGCAGCCACAGCAACCAAAACAACCAATGGTTACAAAGGAGAAGAAGGAGCCAAAGCAGAGAAAGGCATCTAAGCAACCAAAGAAGAATTCGAAAAAGGATTCAATTGAGGCTGAAGAACGCTTCGCCTATGAACCAAAACGTTTGGTAAAGTGTATTATTTGTTTCAAATACTATGTAATATTTTTAAAATATTCTCGAAGATAATGTCAAGACCATCAAAATAAAGGCCAATTCGGTGCTACATCCAGGAATGGTCTTCGCGGACAGAGGGCCATTGGTCATCCACCTCTGCTACGAGTGTCGTCTGTTCAATGCATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTTACAGGTAAAGAGGGAATC</pcr_primer_p1>
		<pcr_primer_p2>TCTTAACCTTCTTTGGTTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTTTACAGGTAAAGAGGGAATCAAGATTAGACAATGGGATAAACGACATGAGTTTAAAATTGAGGAACTGACTGAAAAGAGCTGAATAAAAAAATCTGGAAATGAGTAACTAGAATATGAACTCAATTGGATTGAAAAAGGAATTCTGAAAATGAGGTATTATTCAGAAAATCGGTATTTGTTTTCTATGTTCTTCTTTTATTTTTATAATTTCAGTCGTTAGTCCAAAGAAACCAAAGAAGGTTAAGA</canonical_amplicon>
		<polymorphic_amplicon>CTTTTACAGGTAAAGAGGGAATCAAGATTAGACAATGGGATAAACGACATGAGTTTAAAATTGAGGAACTGACTGAAAAGAGCTGAATAAAAAAWTCTGGAAATGAGTAACTAGAATATGAACTCAATTGGATTGAAAAAGGAATTCTGAAAATGAGGTATTATTCAGAAAATCGGTATTTGTTTTCTATGTTCTTCTTTTATTTTTATAATTTCAGTCGTTAGTCCAAAGAAACCAAAGAAGGTTAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39423</snp_id>
        <super_contig>c013700707.Contig2</super_contig>
        <contig_pos>11815</contig_pos>
        <strand>+</strand>
        <context>TCTaaaatta[G/T]gaaaaattgg</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGTACAGACACTGTTATGTTTCAGATATTGGGTCACTTTTCTAAAATTA</left_flank>
        <right_flank>GAAAAATTGGAAAAATGATAATTTGGAAAGTCGACAAATTATGAAAATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCCAGGAGAACGGGAAGAGATATCAAAATTCTATAAACGTCATTCGATTCAGGATAGAAAGAAACCCTAGGGGACAAATTTTATTCTAACGCTTTCCGTATAAGAGTACCACCAAAAAGACCTGTTTCTGGCCGGTCAATATCTTTAGGACCCCTGGAAATTTCGAAATCTTGGTCATTTTTTTTCGAATTTTCGCTTTTAAACTCAAAATAATTTTCAGTTTCGGGCTTTTTTGATACATTTTCATTAGTATCTCAAAGAATTTTCTTAATTTGTCGACTTTCCAAATTATCTTTTTTTCCAATTTTTCTTGATTTTTGGGTGTTTTTGTAAAAGTGACCCAATTTGTCAAAAATTCAAACTATTCAAAAAGAACGTTCATGGAACATACAGATTTTAATGTTGAAAAGCTAATTTAGGTACTGGGAGCGCAGTCAGGGCCTTGATTTTGTACAGACACTGTTATGTTTCAGATATTGGGTCACTTTTCTAAAATTAGGAAAAATTGGAAAAATGATAATTTGGAAAGTCGACAAATTATGAAAATTCTTTGAGATACTTATGAAAATGTATCAAAAAAGCCCGAAACTGAAAATTATTTCCAGTTTGAAATCGAAAATTCGACAAAAAATGACCAAGATTTCGAAGTTTCCAGGGGTAATAAACATATTGATTTTTTTTCAGTTTGTTTTTTGTTTTGTGCCGAAAGTGCTGTTTTACCAGTAAAATTGTTTTTACCCATAGAAATGTTTGGCTCTTAAGAGTATGTTTTCGGAACACTTTGAATCGTTCTTCGGTAAAAATGACAATAACAACAACGAGAGGTTGTTCTGTCTAGAAGCCAGAAACAATCACCCAATGAAACGTATTTGGTCATATGACCAATTTAAACCTTTTCATATACTCCAATTTAAAAGAAATTACATTTCAAATCATTAAACTAGCTATCTGTATTTTTGTCATCCTCGGATGTGTCAGTGCTCAGTTCAGTGCCTTTCT</canonical>
            <polymorphic>TTCCAGGAGAACGGGAAGAGATATCAAAATTCTATAAACGTCATTCGATTCAGGATAGAAAGAAACCCTAGGGGACAAATTTTATTCTAACGCTTTCCGTATAAGAGTACCACCAAAAAGACCTGTTTCTGGCCGGTCAATATCTTTAGGACCCCTGGAAATTTCGAAATCTTGGTCATTTTTTTTCGAATTTTCGCTTTTAAACTCAAAATAATTTTCAGTTTCGGGCTTTTTTGATACATTTTCATTAGTATCTCAAAGAATTTTCTTAATTTGTCGACTTTCCAAATTATCTTTTTTTCCAATTTTTCTTGATTTTTGGGTGTTTTTGTAAAAGTGACCCAATTTGTCAAAAATTCAAACTATTCAAAAAGAACGTTCATGGAACATACAGATTTTAATGTTGAAAAGCTAATTTAGGTACTGGGAGCGCAGTCAGGGCCTTGATTTTGTACAGACACTGTTATGTTTCAGATATTGGGTCACTTTTCTAAAATTAKGAAAAATTGGAAAAATGATAATTTGGAAAGTCGACAAATTATGAAAATTCTTTGAGATACTTATGAAAATGTATCAAAAAAGCCCGAAACTGAAAATTATTTCCAGTTTGAAATCGAAAATTCGACAAAAAATGACCAAGATTTCGAAGTTTCCAGGGGTAATAAACATATTGATTTTTTTTCAGTTTGTTTTTTGTTTTGTGCCGAAAGTGCTGTTTTACCAGTAAAATTGTTTTTACCCATAGAAATGTTTGGCTCTTAAGAGTATGTTTTCGGAACACTTTGAATCGTTCTTCGGTAAAAATGACAATAACAACAACGAGAGGTTGTTCTGTCTAGAAGCCAGAAACAATCACCCAATGAAACGTATTTGGTCATATGACCAATTTAAACCTTTTCATATACTCCAATTTAAAAGAAATTACATTTCAAATCATTAAACTAGCTATCTGTATTTTTGTCATCCTCGGATGTGTCAGTGCTCAGTTCAGTGCCTTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGAATCTTTAGGACCCATTC</pcr_primer_p1>
		<pcr_primer_p2>TTTACTGGTAAAACAGCACTTTC</pcr_primer_p2>
		<pcr_amplicon_size>780</pcr_amplicon_size>
		<canonical_amplicon>AGGAAAAATTGGAAAAATGATAATTTGGAAAGTCGACAAATTATGAAAATTCTTTGAGATACTTATGAAAATGTATCAAAAAAGCCCGAAACTGAAAATTATTTCCAGTTTGAAATCGAAAATTCGACAAAAAATGACCAAGATTTCGAAGTTTCCAGGGGTAATAAACATATTGATTTTTTTTCAGTTTGTTTTTTGTTTTGTGCCGAAAGTGCTGTTTTACCAGTAAA</canonical_amplicon>
		<polymorphic_amplicon>AKGAAAAATTGGAAAAATGATAATTTGGAAAGTCGACAAATTATGAAAATTCTTTGAGATACTTATGAAAATGTATCAAAAAAGCCCGAAACTGAAAATTATTTCCAGTTTGAAATCGAAAATTCGACAAAAAATGACCAAGATTTCGAAGTTTCCAGGGGTAATAAACATATTGATTTTTTTTCAGTTTGTTTTTTGTTTTGTGCCGAAAGTGCTGTTTTACCAGTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39424</snp_id>
        <super_contig>c013700707.Contig2</super_contig>
        <contig_pos>12052</contig_pos>
        <strand>+</strand>
        <context>AAATTGTTTT[C/T]ACCCATAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGTTTTTTGTTTTGTGCCGAAAGTGCTGTTTTACCAGTAAAATTGTTTT</left_flank>
        <right_flank>ACCCATAGAAATGTTTGGCTCTTAAGAGTATGTTTTCGGAACACTTTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TACATTTTCATTAGTATCTCAAAGAATTTTCTTAATTTGTCGACTTTCCAAATTATCTTTTTTTCCAATTTTTCTTGATTTTTGGGTGTTTTTGTAAAAGTGACCCAATTTGTCAAAAATTCAAACTATTCAAAAAGAACGTTCATGGAACATACAGATTTTAATGTTGAAAAGCTAATTTAGGTACTGGGAGCGCAGTCAGGGCCTTGATTTTGTACAGACACTGTTATGTTTCAGATATTGGGTCACTTTTCTAAAATTAGGAAAAATTGGAAAAATGATAATTTGGAAAGTCGACAAATTATGAAAATTCTTTGAGATACTTATGAAAATGTATCAAAAAAGCCCGAAACTGAAAATTATTTCCAGTTTGAAATCGAAAATTCGACAAAAAATGACCAAGATTTCGAAGTTTCCAGGGGTAATAAACATATTGATTTTTTTTCAGTTTGTTTTTTGTTTTGTGCCGAAAGTGCTGTTTTACCAGTAAAATTGTTTTTACCCATAGAAATGTTTGGCTCTTAAGAGTATGTTTTCGGAACACTTTGAATCGTTCTTCGGTAAAAATGACAATAACAACAACGAGAGGTTGTTCTGTCTAGAAGCCAGAAACAATCACCCAATGAAACGTATTTGGTCATATGACCAATTTAAACCTTTTCATATACTCCAATTTAAAAGAAATTACATTTCAAATCATTAAACTAGCTATCTGTATTTTTGTCATCCTCGGATGTGTCAGTGCTCAGTTCAGTGCCTTTCTGAAAATTAGGAGGCCTGCGAATTTAGGAAGTTCAGCTTTCAAAAGAATTGAGGAACACTTGGAACGAGACTCGAAATTTTAAAAGTTTTAGAAATTATAGAACCAAGACTGTTCGAAAAAAAATTCATCACTATTTACAAACTGTTTTATTTAATGAGGGTAACATCCAATATCAGCACTGTAAAAATAATTAGTTGCAAAGTAATAGGTAACCGGCCGTATTTCATGCATATAAAA</canonical>
            <polymorphic>TACATTTTCATTAGTATCTCAAAGAATTTTCTTAATTTGTCGACTTTCCAAATTATCTTTTTTTCCAATTTTTCTTGATTTTTGGGTGTTTTTGTAAAAGTGACCCAATTTGTCAAAAATTCAAACTATTCAAAAAGAACGTTCATGGAACATACAGATTTTAATGTTGAAAAGCTAATTTAGGTACTGGGAGCGCAGTCAGGGCCTTGATTTTGTACAGACACTGTTATGTTTCAGATATTGGGTCACTTTTCTAAAATTAGGAAAAATTGGAAAAATGATAATTTGGAAAGTCGACAAATTATGAAAATTCTTTGAGATACTTATGAAAATGTATCAAAAAAGCCCGAAACTGAAAATTATTTCCAGTTTGAAATCGAAAATTCGACAAAAAATGACCAAGATTTCGAAGTTTCCAGGGGTAATAAACATATTGATTTTTTTTCAGTTTGTTTTTTGTTTTGTGCCGAAAGTGCTGTTTTACCAGTAAAATTGTTTTYACCCATAGAAATGTTTGGCTCTTAAGAGTATGTTTTCGGAACACTTTGAATCGTTCTTCGGTAAAAATGACAATAACAACAACGAGAGGTTGTTCTGTCTAGAAGCCAGAAACAATCACCCAATGAAACGTATTTGGTCATATGACCAATTTAAACCTTTTCATATACTCCAATTTAAAAGAAATTACATTTCAAATCATTAAACTAGCTATCTGTATTTTTGTCATCCTCGGATGTGTCAGTGCTCAGTTCAGTGCCTTTCTGAAAATTAGGAGGCCTGCGAATTTAGGAAGTTCAGCTTTCAAAAGAATTGAGGAACACTTGGAACGAGACTCGAAATTTTAAAAGTTTTAGAAATTATAGAACCAAGACTGTTCGAAAAAAAATTCATCACTATTTACAAACTGTTTTATTTAATGAGGGTAACATCCAATATCAGCACTGTAAAAATAATTAGTTGCAAAGTAATAGGTAACCGGCCGTATTTCATGCATATAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGATATTGGGTCACTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>CGAAGAACGATTCAAAGTGT</pcr_primer_p2>
		<pcr_amplicon_size>327</pcr_amplicon_size>
		<canonical_amplicon>TCAGATATTGGGTCACTTTTCTAAAATTAGGAAAAATTGGAAAAATGATAATTTGGAAAGTCGACAAATTATGAAAATTCTTTGAGATACTTATGAAAATGTATCAAAAAAGCCCGAAACTGAAAATTATTTCCAGTTTGAAATCGAAAATTCGACAAAAAATGACCAAGATTTCGAAGTTTCCAGGGGTAATAAACATATTGATTTTTTTTCAGTTTGTTTTTTGTTTTGTGCCGAAAGTGCTGTTTTACCAGTAAAATTGTTTTTACCCATAGAAATGTTTGGCTCTTAAGAGTATGTTTTCGGAACACTTTGAATCGTTCTTCG</canonical_amplicon>
		<polymorphic_amplicon>TCAGATATTGGGTCACTTTTCTAAAATTAGGAAAAATTGGAAAAATGATAATTTGGAAAGTCGACAAATTATGAAAATTCTTTGAGATACTTATGAAAATGTATCAAAAAAGCCCGAAACTGAAAATTATTTCCAGTTTGAAATCGAAAATTCGACAAAAAATGACCAAGATTTCGAAGTTTCCAGGGGTAATAAACATATTGATTTTTTTTCAGTTTGTTTTTTGTTTTGTGCCGAAAGTGCTGTTTTACCAGTAAAATTGTTTTYACCCATAGAAATGTTTGGCTCTTAAGAGTATGTTTTCGGAACACTTTGAATCGTTCTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39425</snp_id>
        <super_contig>c013700707.Contig2</super_contig>
        <contig_pos>12081</contig_pos>
        <strand>+</strand>
        <context>CTCTTAAGAG[C/T]ATGTTTTCGG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTTACCAGTAAAATTGTTTTTACCCATAGAAATGTTTGGCTCTTAAGAG</left_flank>
        <right_flank>ATGTTTTCGGAACACTTTGAATCGTTCTTCGGTAAAAATGACAATAACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTAATTTGTCGACTTTCCAAATTATCTTTTTTTCCAATTTTTCTTGATTTTTGGGTGTTTTTGTAAAAGTGACCCAATTTGTCAAAAATTCAAACTATTCAAAAAGAACGTTCATGGAACATACAGATTTTAATGTTGAAAAGCTAATTTAGGTACTGGGAGCGCAGTCAGGGCCTTGATTTTGTACAGACACTGTTATGTTTCAGATATTGGGTCACTTTTCTAAAATTAGGAAAAATTGGAAAAATGATAATTTGGAAAGTCGACAAATTATGAAAATTCTTTGAGATACTTATGAAAATGTATCAAAAAAGCCCGAAACTGAAAATTATTTCCAGTTTGAAATCGAAAATTCGACAAAAAATGACCAAGATTTCGAAGTTTCCAGGGGTAATAAACATATTGATTTTTTTTCAGTTTGTTTTTTGTTTTGTGCCGAAAGTGCTGTTTTACCAGTAAAATTGTTTTTACCCATAGAAATGTTTGGCTCTTAAGAGTATGTTTTCGGAACACTTTGAATCGTTCTTCGGTAAAAATGACAATAACAACAACGAGAGGTTGTTCTGTCTAGAAGCCAGAAACAATCACCCAATGAAACGTATTTGGTCATATGACCAATTTAAACCTTTTCATATACTCCAATTTAAAAGAAATTACATTTCAAATCATTAAACTAGCTATCTGTATTTTTGTCATCCTCGGATGTGTCAGTGCTCAGTTCAGTGCCTTTCTGAAAATTAGGAGGCCTGCGAATTTAGGAAGTTCAGCTTTCAAAAGAATTGAGGAACACTTGGAACGAGACTCGAAATTTTAAAAGTTTTAGAAATTATAGAACCAAGACTGTTCGAAAAAAAATTCATCACTATTTACAAACTGTTTTATTTAATGAGGGTAACATCCAATATCAGCACTGTAAAAATAATTAGTTGCAAAGTAATAGGTAACCGGCCGTATTTCATGCATATAAAAATGCTTCGCATTCACATGAACACATTTCA</canonical>
            <polymorphic>TCTTAATTTGTCGACTTTCCAAATTATCTTTTTTTCCAATTTTTCTTGATTTTTGGGTGTTTTTGTAAAAGTGACCCAATTTGTCAAAAATTCAAACTATTCAAAAAGAACGTTCATGGAACATACAGATTTTAATGTTGAAAAGCTAATTTAGGTACTGGGAGCGCAGTCAGGGCCTTGATTTTGTACAGACACTGTTATGTTTCAGATATTGGGTCACTTTTCTAAAATTAGGAAAAATTGGAAAAATGATAATTTGGAAAGTCGACAAATTATGAAAATTCTTTGAGATACTTATGAAAATGTATCAAAAAAGCCCGAAACTGAAAATTATTTCCAGTTTGAAATCGAAAATTCGACAAAAAATGACCAAGATTTCGAAGTTTCCAGGGGTAATAAACATATTGATTTTTTTTCAGTTTGTTTTTTGTTTTGTGCCGAAAGTGCTGTTTTACCAGTAAAATTGTTTTTACCCATAGAAATGTTTGGCTCTTAAGAGYATGTTTTCGGAACACTTTGAATCGTTCTTCGGTAAAAATGACAATAACAACAACGAGAGGTTGTTCTGTCTAGAAGCCAGAAACAATCACCCAATGAAACGTATTTGGTCATATGACCAATTTAAACCTTTTCATATACTCCAATTTAAAAGAAATTACATTTCAAATCATTAAACTAGCTATCTGTATTTTTGTCATCCTCGGATGTGTCAGTGCTCAGTTCAGTGCCTTTCTGAAAATTAGGAGGCCTGCGAATTTAGGAAGTTCAGCTTTCAAAAGAATTGAGGAACACTTGGAACGAGACTCGAAATTTTAAAAGTTTTAGAAATTATAGAACCAAGACTGTTCGAAAAAAAATTCATCACTATTTACAAACTGTTTTATTTAATGAGGGTAACATCCAATATCAGCACTGTAAAAATAATTAGTTGCAAAGTAATAGGTAACCGGCCGTATTTCATGCATATAAAAATGCTTCGCATTCACATGAACACATTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGATATTGGGTCACTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>ACCTCTCGTTGTTGTTATTGTC</pcr_primer_p2>
		<pcr_amplicon_size>357</pcr_amplicon_size>
		<canonical_amplicon>TCAGATATTGGGTCACTTTTCTAAAATTAGGAAAAATTGGAAAAATGATAATTTGGAAAGTCGACAAATTATGAAAATTCTTTGAGATACTTATGAAAATGTATCAAAAAAGCCCGAAACTGAAAATTATTTCCAGTTTGAAATCGAAAATTCGACAAAAAATGACCAAGATTTCGAAGTTTCCAGGGGTAATAAACATATTGATTTTTTTTCAGTTTGTTTTTTGTTTTGTGCCGAAAGTGCTGTTTTACCAGTAAAATTGTTTTTACCCATAGAAATGTTTGGCTCTTAAGAGTATGTTTTCGGAACACTTTGAATCGTTCTTCGGTAAAAATGACAATAACAACAACGAGAGGT</canonical_amplicon>
		<polymorphic_amplicon>TCAGATATTGGGTCACTTTTCTAAAATTAGGAAAAATTGGAAAAATGATAATTTGGAAAGTCGACAAATTATGAAAATTCTTTGAGATACTTATGAAAATGTATCAAAAAAGCCCGAAACTGAAAATTATTTCCAGTTTGAAATCGAAAATTCGACAAAAAATGACCAAGATTTCGAAGTTTCCAGGGGTAATAAACATATTGATTTTTTTTCAGTTTGTTTTTTGTTTTGTGCCGAAAGTGCTGTTTTACCAGTAAAATTGTTTTTACCCATAGAAATGTTTGGCTCTTAAGAGYATGTTTTCGGAACACTTTGAATCGTTCTTCGGTAAAAATGACAATAACAACAACGAGAGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39426</snp_id>
        <super_contig>c013700707.Contig2</super_contig>
        <contig_pos>12113</contig_pos>
        <strand>+</strand>
        <context>TCGTTCTTCG[G/T]TAAAARTGAC</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGTTTGGCTCTTAAGAGTATGTTTTCGGAACACTTTGAATCGTTCTTCG</left_flank>
        <right_flank>TAAAAATGACAATAACAACAACGAGAGGTTGTTCTGTCTAGAAGCCAGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCAATTTTTCTTGATTTTTGGGTGTTTTTGTAAAAGTGACCCAATTTGTCAAAAATTCAAACTATTCAAAAAGAACGTTCATGGAACATACAGATTTTAATGTTGAAAAGCTAATTTAGGTACTGGGAGCGCAGTCAGGGCCTTGATTTTGTACAGACACTGTTATGTTTCAGATATTGGGTCACTTTTCTAAAATTAGGAAAAATTGGAAAAATGATAATTTGGAAAGTCGACAAATTATGAAAATTCTTTGAGATACTTATGAAAATGTATCAAAAAAGCCCGAAACTGAAAATTATTTCCAGTTTGAAATCGAAAATTCGACAAAAAATGACCAAGATTTCGAAGTTTCCAGGGGTAATAAACATATTGATTTTTTTTCAGTTTGTTTTTTGTTTTGTGCCGAAAGTGCTGTTTTACCAGTAAAATTGTTTTTACCCATAGAAATGTTTGGCTCTTAAGAGTATGTTTTCGGAACACTTTGAATCGTTCTTCGGTAAAAATGACAATAACAACAACGAGAGGTTGTTCTGTCTAGAAGCCAGAAACAATCACCCAATGAAACGTATTTGGTCATATGACCAATTTAAACCTTTTCATATACTCCAATTTAAAAGAAATTACATTTCAAATCATTAAACTAGCTATCTGTATTTTTGTCATCCTCGGATGTGTCAGTGCTCAGTTCAGTGCCTTTCTGAAAATTAGGAGGCCTGCGAATTTAGGAAGTTCAGCTTTCAAAAGAATTGAGGAACACTTGGAACGAGACTCGAAATTTTAAAAGTTTTAGAAATTATAGAACCAAGACTGTTCGAAAAAAAATTCATCACTATTTACAAACTGTTTTATTTAATGAGGGTAACATCCAATATCAGCACTGTAAAAATAATTAGTTGCAAAGTAATAGGTAACCGGCCGTATTTCATGCATATAAAAATGCTTCGCATTCACATGAACACATTTCACCGCATCATTTTGGACGAAGCTACAAATTTGA</canonical>
            <polymorphic>TTTCCAATTTTTCTTGATTTTTGGGTGTTTTTGTAAAAGTGACCCAATTTGTCAAAAATTCAAACTATTCAAAAAGAACGTTCATGGAACATACAGATTTTAATGTTGAAAAGCTAATTTAGGTACTGGGAGCGCAGTCAGGGCCTTGATTTTGTACAGACACTGTTATGTTTCAGATATTGGGTCACTTTTCTAAAATTAGGAAAAATTGGAAAAATGATAATTTGGAAAGTCGACAAATTATGAAAATTCTTTGAGATACTTATGAAAATGTATCAAAAAAGCCCGAAACTGAAAATTATTTCCAGTTTGAAATCGAAAATTCGACAAAAAATGACCAAGATTTCGAAGTTTCCAGGGGTAATAAACATATTGATTTTTTTTCAGTTTGTTTTTTGTTTTGTGCCGAAAGTGCTGTTTTACCAGTAAAATTGTTTTTACCCATAGAAATGTTTGGCTCTTAAGAGTATGTTTTCGGAACACTTTGAATCGTTCTTCGKTAAAAATGACAATAACAACAACGAGAGGTTGTTCTGTCTAGAAGCCAGAAACAATCACCCAATGAAACGTATTTGGTCATATGACCAATTTAAACCTTTTCATATACTCCAATTTAAAAGAAATTACATTTCAAATCATTAAACTAGCTATCTGTATTTTTGTCATCCTCGGATGTGTCAGTGCTCAGTTCAGTGCCTTTCTGAAAATTAGGAGGCCTGCGAATTTAGGAAGTTCAGCTTTCAAAAGAATTGAGGAACACTTGGAACGAGACTCGAAATTTTAAAAGTTTTAGAAATTATAGAACCAAGACTGTTCGAAAAAAAATTCATCACTATTTACAAACTGTTTTATTTAATGAGGGTAACATCCAATATCAGCACTGTAAAAATAATTAGTTGCAAAGTAATAGGTAACCGGCCGTATTTCATGCATATAAAAATGCTTCGCATTCACATGAACACATTTCACCGCATCATTTTGGACGAAGCTACAAATTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATAGAAATGTTTGGCTCTTA</pcr_primer_p1>
		<pcr_primer_p2>TGAACTGAGCACTGACACAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCATAGAAATGTTTGGCTCTTAAGAGTATGTTTTCGGAACACTTTGAATCGTTCTTCGGTAAAAATGACAATAACAACAACGAGAGGTTGTTCTGTCTAGAAGCCAGAAACAATCACCCAATGAAACGTATTTGGTCATATGACCAATTTAAACCTTTTCATATACTCCAATTTAAAAGAAATTACATTTCAAATCATTAAACTAGCTATCTGTATTTTTGTCATCCTCGGATGTGTCAGTGCTCAGTTCA</canonical_amplicon>
		<polymorphic_amplicon>CCATAGAAATGTTTGGCTCTTAAGAGTATGTTTTCGGAACACTTTGAATCGTTCTTCGKTAAAAATGACAATAACAACAACGAGAGGTTGTTCTGTCTAGAAGCCAGAAACAATCACCCAATGAAACGTATTTGGTCATATGACCAATTTAAACCTTTTCATATACTCCAATTTAAAAGAAATTACATTTCAAATCATTAAACTAGCTATCTGTATTTTTGTCATCCTCGGATGTGTCAGTGCTCAGTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39427</snp_id>
        <super_contig>c013700707.Contig2</super_contig>
        <contig_pos>12119</contig_pos>
        <strand>+</strand>
        <context>TTCGKTAAAA[A/G]TGACAATAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGCTCTTAAGAGTATGTTTTCGGAACACTTTGAATCGTTCTTCGGTAAAA</left_flank>
        <right_flank>TGACAATAACAACAACGAGAGGTTGTTCTGTCTAGAAGCCAGAAACAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTCTTGATTTTTGGGTGTTTTTGTAAAAGTGACCCAATTTGTCAAAAATTCAAACTATTCAAAAAGAACGTTCATGGAACATACAGATTTTAATGTTGAAAAGCTAATTTAGGTACTGGGAGCGCAGTCAGGGCCTTGATTTTGTACAGACACTGTTATGTTTCAGATATTGGGTCACTTTTCTAAAATTAGGAAAAATTGGAAAAATGATAATTTGGAAAGTCGACAAATTATGAAAATTCTTTGAGATACTTATGAAAATGTATCAAAAAAGCCCGAAACTGAAAATTATTTCCAGTTTGAAATCGAAAATTCGACAAAAAATGACCAAGATTTCGAAGTTTCCAGGGGTAATAAACATATTGATTTTTTTTCAGTTTGTTTTTTGTTTTGTGCCGAAAGTGCTGTTTTACCAGTAAAATTGTTTTTACCCATAGAAATGTTTGGCTCTTAAGAGTATGTTTTCGGAACACTTTGAATCGTTCTTCGGTAAAAATGACAATAACAACAACGAGAGGTTGTTCTGTCTAGAAGCCAGAAACAATCACCCAATGAAACGTATTTGGTCATATGACCAATTTAAACCTTTTCATATACTCCAATTTAAAAGAAATTACATTTCAAATCATTAAACTAGCTATCTGTATTTTTGTCATCCTCGGATGTGTCAGTGCTCAGTTCAGTGCCTTTCTGAAAATTAGGAGGCCTGCGAATTTAGGAAGTTCAGCTTTCAAAAGAATTGAGGAACACTTGGAACGAGACTCGAAATTTTAAAAGTTTTAGAAATTATAGAACCAAGACTGTTCGAAAAAAAATTCATCACTATTTACAAACTGTTTTATTTAATGAGGGTAACATCCAATATCAGCACTGTAAAAATAATTAGTTGCAAAGTAATAGGTAACCGGCCGTATTTCATGCATATAAAAATGCTTCGCATTCACATGAACACATTTCACCGCATCATTTTGGACGAAGCTACAAATTTGAGGACCA</canonical>
            <polymorphic>ATTTTTCTTGATTTTTGGGTGTTTTTGTAAAAGTGACCCAATTTGTCAAAAATTCAAACTATTCAAAAAGAACGTTCATGGAACATACAGATTTTAATGTTGAAAAGCTAATTTAGGTACTGGGAGCGCAGTCAGGGCCTTGATTTTGTACAGACACTGTTATGTTTCAGATATTGGGTCACTTTTCTAAAATTAGGAAAAATTGGAAAAATGATAATTTGGAAAGTCGACAAATTATGAAAATTCTTTGAGATACTTATGAAAATGTATCAAAAAAGCCCGAAACTGAAAATTATTTCCAGTTTGAAATCGAAAATTCGACAAAAAATGACCAAGATTTCGAAGTTTCCAGGGGTAATAAACATATTGATTTTTTTTCAGTTTGTTTTTTGTTTTGTGCCGAAAGTGCTGTTTTACCAGTAAAATTGTTTTTACCCATAGAAATGTTTGGCTCTTAAGAGTATGTTTTCGGAACACTTTGAATCGTTCTTCGGTAAAARTGACAATAACAACAACGAGAGGTTGTTCTGTCTAGAAGCCAGAAACAATCACCCAATGAAACGTATTTGGTCATATGACCAATTTAAACCTTTTCATATACTCCAATTTAAAAGAAATTACATTTCAAATCATTAAACTAGCTATCTGTATTTTTGTCATCCTCGGATGTGTCAGTGCTCAGTTCAGTGCCTTTCTGAAAATTAGGAGGCCTGCGAATTTAGGAAGTTCAGCTTTCAAAAGAATTGAGGAACACTTGGAACGAGACTCGAAATTTTAAAAGTTTTAGAAATTATAGAACCAAGACTGTTCGAAAAAAAATTCATCACTATTTACAAACTGTTTTATTTAATGAGGGTAACATCCAATATCAGCACTGTAAAAATAATTAGTTGCAAAGTAATAGGTAACCGGCCGTATTTCATGCATATAAAAATGCTTCGCATTCACATGAACACATTTCACCGCATCATTTTGGACGAAGCTACAAATTTGAGGACCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCATAGAAATGTTTGGCTCTTA</pcr_primer_p1>
		<pcr_primer_p2>TGAACTGAGCACTGACACAT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCATAGAAATGTTTGGCTCTTAAGAGTATGTTTTCGGAACACTTTGAATCGTTCTTCGGTAAAAATGACAATAACAACAACGAGAGGTTGTTCTGTCTAGAAGCCAGAAACAATCACCCAATGAAACGTATTTGGTCATATGACCAATTTAAACCTTTTCATATACTCCAATTTAAAAGAAATTACATTTCAAATCATTAAACTAGCTATCTGTATTTTTGTCATCCTCGGATGTGTCAGTGCTCAGTTCA</canonical_amplicon>
		<polymorphic_amplicon>CCATAGAAATGTTTGGCTCTTAAGAGTATGTTTTCGGAACACTTTGAATCGTTCTTCGGTAAAARTGACAATAACAACAACGAGAGGTTGTTCTGTCTAGAAGCCAGAAACAATCACCCAATGAAACGTATTTGGTCATATGACCAATTTAAACCTTTTCATATACTCCAATTTAAAAGAAATTACATTTCAAATCATTAAACTAGCTATCTGTATTTTTGTCATCCTCGGATGTGTCAGTGCTCAGTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39428</snp_id>
        <super_contig>c013700707.Contig2</super_contig>
        <contig_pos>12182</contig_pos>
        <strand>+</strand>
        <context>CCAATGAAAC[A/G]TATTTGGTCA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAACGAGAGGTTGTTCTGTCTAGAAGCCAGAAACAATCACCCAATGAAAC</left_flank>
        <right_flank>TATTTGGTCATATGACCAATTTAAACCTTTTCATATACTCCAATTTAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAAAGAACGTTCATGGAACATACAGATTTTAATGTTGAAAAGCTAATTTAGGTACTGGGAGCGCAGTCAGGGCCTTGATTTTGTACAGACACTGTTATGTTTCAGATATTGGGTCACTTTTCTAAAATTAGGAAAAATTGGAAAAATGATAATTTGGAAAGTCGACAAATTATGAAAATTCTTTGAGATACTTATGAAAATGTATCAAAAAAGCCCGAAACTGAAAATTATTTCCAGTTTGAAATCGAAAATTCGACAAAAAATGACCAAGATTTCGAAGTTTCCAGGGGTAATAAACATATTGATTTTTTTTCAGTTTGTTTTTTGTTTTGTGCCGAAAGTGCTGTTTTACCAGTAAAATTGTTTTTACCCATAGAAATGTTTGGCTCTTAAGAGTATGTTTTCGGAACACTTTGAATCGTTCTTCGGTAAAAATGACAATAACAACAACGAGAGGTTGTTCTGTCTAGAAGCCAGAAACAATCACCCAATGAAACGTATTTGGTCATATGACCAATTTAAACCTTTTCATATACTCCAATTTAAAAGAAATTACATTTCAAATCATTAAACTAGCTATCTGTATTTTTGTCATCCTCGGATGTGTCAGTGCTCAGTTCAGTGCCTTTCTGAAAATTAGGAGGCCTGCGAATTTAGGAAGTTCAGCTTTCAAAAGAATTGAGGAACACTTGGAACGAGACTCGAAATTTTAAAAGTTTTAGAAATTATAGAACCAAGACTGTTCGAAAAAAAATTCATCACTATTTACAAACTGTTTTATTTAATGAGGGTAACATCCAATATCAGCACTGTAAAAATAATTAGTTGCAAAGTAATAGGTAACCGGCCGTATTTCATGCATATAAAAATGCTTCGCATTCACATGAACACATTTCACCGCATCATTTTGGACGAAGCTACAAATTTGAGGACCAGGACAAATTCCATTTTTCAGTCGATTACGCCTGTTCCTCAAAATCCTATAATATCGACCTTCG</canonical>
            <polymorphic>CAAAAAGAACGTTCATGGAACATACAGATTTTAATGTTGAAAAGCTAATTTAGGTACTGGGAGCGCAGTCAGGGCCTTGATTTTGTACAGACACTGTTATGTTTCAGATATTGGGTCACTTTTCTAAAATTAGGAAAAATTGGAAAAATGATAATTTGGAAAGTCGACAAATTATGAAAATTCTTTGAGATACTTATGAAAATGTATCAAAAAAGCCCGAAACTGAAAATTATTTCCAGTTTGAAATCGAAAATTCGACAAAAAATGACCAAGATTTCGAAGTTTCCAGGGGTAATAAACATATTGATTTTTTTTCAGTTTGTTTTTTGTTTTGTGCCGAAAGTGCTGTTTTACCAGTAAAATTGTTTTTACCCATAGAAATGTTTGGCTCTTAAGAGTATGTTTTCGGAACACTTTGAATCGTTCTTCGGTAAAAATGACAATAACAACAACGAGAGGTTGTTCTGTCTAGAAGCCAGAAACAATCACCCAATGAAACRTATTTGGTCATATGACCAATTTAAACCTTTTCATATACTCCAATTTAAAAGAAATTACATTTCAAATCATTAAACTAGCTATCTGTATTTTTGTCATCCTCGGATGTGTCAGTGCTCAGTTCAGTGCCTTTCTGAAAATTAGGAGGCCTGCGAATTTAGGAAGTTCAGCTTTCAAAAGAATTGAGGAACACTTGGAACGAGACTCGAAATTTTAAAAGTTTTAGAAATTATAGAACCAAGACTGTTCGAAAAAAAATTCATCACTATTTACAAACTGTTTTATTTAATGAGGGTAACATCCAATATCAGCACTGTAAAAATAATTAGTTGCAAAGTAATAGGTAACCGGCCGTATTTCATGCATATAAAAATGCTTCGCATTCACATGAACACATTTCACCGCATCATTTTGGACGAAGCTACAAATTTGAGGACCAGGACAAATTCCATTTTTCAGTCGATTACGCCTGTTCCTCAAAATCCTATAATATCGACCTTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACGT</site>
                <isoschizomers>
                    <enzyme>HpyCH4IV</enzyme>
                    <enzyme>MaeII</enzyme>
                    <enzyme>TaiI</enzyme>
                    <enzyme>TscI</enzyme>
                </isoschizomers>
                <canonical_bands>502 489 9</canonical_bands>
                <polymorphic_bands>991 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACAATAACAACAACGAGAGGTT</pcr_primer_p1>
		<pcr_primer_p2>CAATTCTTTTGAAAGCTGAACT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ACAATAACAACAACGAGAGGTTGTTCTGTCTAGAAGCCAGAAACAATCACCCAATGAAACGTATTTGGTCATATGACCAATTTAAACCTTTTCATATACTCCAATTTAAAAGAAATTACATTTCAAATCATTAAACTAGCTATCTGTATTTTTGTCATCCTCGGATGTGTCAGTGCTCAGTTCAGTGCCTTTCTGAAAATTAGGAGGCCTGCGAATTTAGGAAGTTCAGCTTTCAAAAGAATTG</canonical_amplicon>
		<polymorphic_amplicon>ACAATAACAACAACGAGAGGTTGTTCTGTCTAGAAGCCAGAAACAATCACCCAATGAAACRTATTTGGTCATATGACCAATTTAAACCTTTTCATATACTCCAATTTAAAAGAAATTACATTTCAAATCATTAAACTAGCTATCTGTATTTTTGTCATCCTCGGATGTGTCAGTGCTCAGTTCAGTGCCTTTCTGAAAATTAGGAGGCCTGCGAATTTAGGAAGTTCAGCTTTCAAAAGAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39429</snp_id>
        <super_contig>c013700707.Contig2</super_contig>
        <contig_pos>75264</contig_pos>
        <strand>+</strand>
        <context>TTGTAGTTTT[C/T]CCAAAGTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATATCGAAATTCAAAATTTTCGATGTTCAAAATTTAAATTTGTAGTTTT</left_flank>
        <right_flank>CCAAAGTTCAAACTTTTTCTGGGCTTTCGAAATTTCCGTTTTTTTTAGTT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCCGGATGAAATTGAGACGATCCTGTTCGATTTTTGTCCAGACATCTACGCGAAATTGTTGGAAAAGCTTTTTTGCGTGATGAAGTGGAGAGAAGGTCGAACGGATGTGAAGGTAGTAGGAATAGAACTCCCGAGCACTCATCTTGGTCGTTCCTCCATGTCCATCTTGTCTTTTCTGGTTGACGTGCCATCCATATTTTCCATCCACAAAGAGAAGAGGATAGCACAATGGATCTGTCTCTTTATCAGTATCCAAAAGATATTGAAAAGTTCCTGTGGATCTTTGATAGACTGTGATGGCTCTTTTTCCAGGATTTTCGTTTTCGTCGCCAACAAACACCACAGCGATTTCTTCAGCTGTTGGAAGTTGGTATCTGGAAAATTGAGTTTTGCGAATTTCAAAAACTCAAAGCTTTGAGCTTCTATTTTTTTGAAACTCAGAGTTTTAAAATATCGAAATTCAAAATTTTCGATGTTCAAAATTTAAATTTGTAGTTTTTCCAAAGTTCAAACTTTTTCTGGGCTTTCGAAATTTCCGTTTTTTTTAGTTTCCGTTACTAACCTGTTGGGGTTCAAATTTGTGTTCGATCGAAAAACCATCTTCACTTCTCTAACATCTCGGTTTTCGGCTGTTGCCAATAATTCCTCTTCTTCCTCTTTCTCTCGCATCATTTTATATGACTTCACAAATGGATTGTACATGTGAAGTAGATCGTCCAATTTCTTGTATAGATCTTTGGAGCACGATACTTTGGTTTTTCTATTCGCGAGCTCCGCGGCTGCTTCCTCGGTGTCAAGGATGAAGACTTGGGCACAGAGATGCTCTTGCCCAGGTTCCGGATGTAGAGCTCCAGTGACGTGGAACACTTGCCCGTGCAGTCGATAAGTGTATGGACCACCTCCTTTTGGAGTATCCACGTGTGCGACCATGGAACCCATTGCCAAGGAGTTGTTGTAAGTCCTGATGTTTTTCAAAAATTCAGCAGACTCCGAAGTAGAA</canonical>
            <polymorphic>GCCGGATGAAATTGAGACGATCCTGTTCGATTTTTGTCCAGACATCTACGCGAAATTGTTGGAAAAGCTTTTTTGCGTGATGAAGTGGAGAGAAGGTCGAACGGATGTGAAGGTAGTAGGAATAGAACTCCCGAGCACTCATCTTGGTCGTTCCTCCATGTCCATCTTGTCTTTTCTGGTTGACGTGCCATCCATATTTTCCATCCACAAAGAGAAGAGGATAGCACAATGGATCTGTCTCTTTATCAGTATCCAAAAGATATTGAAAAGTTCCTGTGGATCTTTGATAGACTGTGATGGCTCTTTTTCCAGGATTTTCGTTTTCGTCGCCAACAAACACCACAGCGATTTCTTCAGCTGTTGGAAGTTGGTATCTGGAAAATTGAGTTTTGCGAATTTCAAAAACTCAAAGCTTTGAGCTTCTATTTTTTTGAAACTCAGAGTTTTAAAATATCGAAATTCAAAATTTTCGATGTTCAAAATTTAAATTTGTAGTTTTYCCAAAGTTCAAACTTTTTCTGGGCTTTCGAAATTTCCGTTTTTTTTAGTTTCCGTTACTAACCTGTTGGGGTTCAAATTTGTGTTCGATCGAAAAACCATCTTCACTTCTCTAACATCTCGGTTTTCGGCTGTTGCCAATAATTCCTCTTCTTCCTCTTTCTCTCGCATCATTTTATATGACTTCACAAATGGATTGTACATGTGAAGTAGATCGTCCAATTTCTTGTATAGATCTTTGGAGCACGATACTTTGGTTTTTCTATTCGCGAGCTCCGCGGCTGCTTCCTCGGTGTCAAGGATGAAGACTTGGGCACAGAGATGCTCTTGCCCAGGTTCCGGATGTAGAGCTCCAGTGACGTGGAACACTTGCCCGTGCAGTCGATAAGTGTATGGACCACCTCCTTTTGGAGTATCCACGTGTGCGACCATGGAACCCATTGCCAAGGAGTTGTTGTAAGTCCTGATGTTTTTCAAAAATTCAGCAGACTCCGAAGTAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTGGTATCTGGAAAATTGAGT</pcr_primer_p1>
		<pcr_primer_p2>TAGAGAAGTGAAGATGGTTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGTTGGTATCTGGAAAATTGAGTTTTGCGAATTTCAAAAACTCAAAGCTTTGAGCTTCTATTTTTTTGAAACTCAGAGTTTTAAAATATCGAAATTCAAAATTTTCGATGTTCAAAATTTAAATTTGTAGTTTTTCCAAAGTTCAAACTTTTTCTGGGCTTTCGAAATTTCCGTTTTTTTTAGTTTCCGTTACTAACCTGTTGGGGTTCAAATTTGTGTTCGATCGAAAAACCATCTTCACTTCTCTA</canonical_amplicon>
		<polymorphic_amplicon>AGTTGGTATCTGGAAAATTGAGTTTTGCGAATTTCAAAAACTCAAAGCTTTGAGCTTCTATTTTTTTGAAACTCAGAGTTTTAAAATATCGAAATTCAAAATTTTCGATGTTCAAAATTTAAATTTGTAGTTTTYCCAAAGTTCAAACTTTTTCTGGGCTTTCGAAATTTCCGTTTTTTTTAGTTTCCGTTACTAACCTGTTGGGGTTCAAATTTGTGTTCGATCGAAAAACCATCTTCACTTCTCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39430</snp_id>
        <super_contig>c013700708.Contig1</super_contig>
        <contig_pos>12521</contig_pos>
        <strand>+</strand>
        <context>AATTGTGAAC[C/T]GGGCCTTCGC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGAGTGAGGTGAGCTTATTGGACGGTAGAGTTTTATCCATAATTGTGAAC</left_flank>
        <right_flank>GGGCCTTCGCGAGCCCTGCCATAGTTTCTTTTAGAATCAATGTTTTTGGA</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGATATTAACTTTCTCTTCTGTTTACTAGTCAATGTCGGATTATTCATTTAGTGTACCATTGAGTGAGGTGAGATTTCGGAGACTACATGGGGCATTTTGAGCGATTTCCTGTGATAGTTGGCTGCCTTGCTTCTACCGTAGAGGAAAAGGCGCCCAGACGGTGGGCAACATGCTCAAAACCTGGGTAATTTGCCCAAGTCTACCCGAAGCATGTCCAACTTGTGCCTCAAGCTTGCCGCAAAAAGATGAGGATCAGTTTTGCTATTCTTTTTACAAAATCTTGTCCAAACGAGTCTTGCCAGCTTAGGTCATTTGCACAACTAACGTCAAGCTTCCTATTTAGTCTGTCAGTGATTCATTTAGTCTCACAGGCTTCCAGAAATCTAAAAATTCATTTTCTCTTCAGTTTACTAGTTATTGACAATGGTTTATTCACTTACTATTCCACTGAGTGAGGTGAGCTTATTGGACGGTAGAGTTTTATCCATAATTGTGAACTGGGCCTTCGCGAGCCCTGCCATAGTTTCTTTTAGAATCAATGTTTTTGGACAAATTATTATAAATAACATGACAGAATTCAATGAGTACTACAAAATGCACTTTTTTAGAAAACGTTATCTTGTCTATGAACAAAGTTACAAGGAGAAAACCGTTGGAGCTGCGCACTCACATCTATCTGGCCTTGTAAATTTGTTCATAGACAAGATACAGATTTTCCAATAGTGTCAATTTGTAGTACTCAACAAGTTCTGTCATATCAAATTTACCTGGCCCAAGAATATTTGTTCTGAAAAAATCTATGGCAAAGCCCACAAAGGCCCACTTTACGAGTATGGTTTTATCAATTTTTCATCAAATTTTAGGATTTCGGGGAAATCCCAGAATCTGCCAAAGACGGGGTTTATTACGCTGTCGTTACACTTTTTGTGAGTTCAACATTGGCGTCCACACTGCTCAGCGCAGCATTTCTAGTCCTATCAATTATACTTTGGGGACGTT</canonical>
            <polymorphic>TGATATTAACTTTCTCTTCTGTTTACTAGTCAATGTCGGATTATTCATTTAGTGTACCATTGAGTGAGGTGAGATTTCGGAGACTACATGGGGCATTTTGAGCGATTTCCTGTGATAGTTGGCTGCCTTGCTTCTACCGTAGAGGAAAAGGCGCCCAGACGGTGGGCAACATGCTCAAAACCTGGGTAATTTGCCCAAGTCTACCCGAAGCATGTCCAACTTGTGCCTCAAGCTTGCCGCAAAAAGATGAGGATCAGTTTTGCTATTCTTTTTACAAAATCTTGTCCAAACGAGTCTTGCCAGCTTAGGTCATTTGCACAACTAACGTCAAGCTTCCTATTTAGTCTGTCAGTGATTCATTTAGTCTCACAGGCTTCCAGAAATCTAAAAATTCATTTTCTCTTCAGTTTACTAGTTATTGACAATGGTTTATTCACTTACTATTCCACTGAGTGAGGTGAGCTTATTGGACGGTAGAGTTTTATCCATAATTGTGAACYGGGCCTTCGCGAGCCCTGCCATAGTTTCTTTTAGAATCAATGTTTTTGGACAAATTATTATAAATAACATGACAGAATTCAATGAGTACTACAAAATGCACTTTTTTAGAAAACGTTATCTTGTCTATGAACAAAGTTACAAGGAGAAAACCGTTGGAGCTGCGCACTCACATCTATCTGGCCTTGTAAATTTGTTCATAGACAAGATACAGATTTTCCAATAGTGTCAATTTGTAGTACTCAACAAGTTCTGTCATATCAAATTTACCTGGCCCAAGAATATTTGTTCTGAAAAAATCTATGGCAAAGCCCACAAAGGCCCACTTTACGAGTATGGTTTTATCAATTTTTCATCAAATTTTAGGATTTCGGGGAAATCCCAGAATCTGCCAAAGACGGGGTTTATTACGCTGTCGTTACACTTTTTGTGAGTTCAACATTGGCGTCCACACTGCTCAGCGCAGCATTTCTAGTCCTATCAATTATACTTTGGGGACGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAGTGAGGTGAGCTTATTG</pcr_primer_p1>
		<pcr_primer_p2>ATAAAACCATACTCGTAAAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>CTGAGTGAGGTGAGCTTATTGGACGGTAGAGTTTTATCCATAATTGTGAACTGGGCCTTCGCGAGCCCTGCCATAGTTTCTTTTAGAATCAATGTTTTTGGACAAATTATTATAAATAACATGACAGAATTCAATGAGTACTACAAAATGCACTTTTTTAGAAAACGTTATCTTGTCTATGAACAAAGTTACAAGGAGAAAACCGTTGGAGCTGCGCACTCACATCTATCTGGCCTTGTAAATTTGTTCATAGACAAGATACAGATTTTCCAATAGTGTCAATTTGTAGTACTCAACAAGTTCTGTCATATCAAATTTACCTGGCCCAAGAATATTTGTTCTGAAAAAATCTATGGCAAAGCCCACAAAGGCCCACTTTACGAGTATGGTTTTAT</canonical_amplicon>
		<polymorphic_amplicon>CTGAGTGAGGTGAGCTTATTGGACGGTAGAGTTTTATCCATAATTGTGAACYGGGCCTTCGCGAGCCCTGCCATAGTTTCTTTTAGAATCAATGTTTTTGGACAAATTATTATAAATAACATGACAGAATTCAATGAGTACTACAAAATGCACTTTTTTAGAAAACGTTATCTTGTCTATGAACAAAGTTACAAGGAGAAAACCGTTGGAGCTGCGCACTCACATCTATCTGGCCTTGTAAATTTGTTCATAGACAAGATACAGATTTTCCAATAGTGTCAATTTGTAGTACTCAACAAGTTCTGTCATATCAAATTTACCTGGCCCAAGAATATTTGTTCTGAAAAAATCTATGGCAAAGCCCACAAAGGCCCACTTTACGAGTATGGTTTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39431</snp_id>
        <super_contig>c013700708.Contig1</super_contig>
        <contig_pos>12542</contig_pos>
        <strand></strand>
        <context>GAGCCCTGcc[A/C]tagtttcttt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACGGTAGAGTTTTATCCATAATTGTGAACTGGGCCTTCGCGAGCCCTGCC</left_flank>
        <right_flank>TAGTTTCTTTTAGAATCAATGTTTTTGGACAAATTATTATAAATAACATG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTACTAGTCAATGTCGGATTATTCATTTAGTGTACCATTGAGTGAGGTGAGATTTCGGAGACTACATGGGGCATTTTGAGCGATTTCCTGTGATAGTTGGCTGCCTTGCTTCTACCGTAGAGGAAAAGGCGCCCAGACGGTGGGCAACATGCTCAAAACCTGGGTAATTTGCCCAAGTCTACCCGAAGCATGTCCAACTTGTGCCTCAAGCTTGCCGCAAAAAGATGAGGATCAGTTTTGCTATTCTTTTTACAAAATCTTGTCCAAACGAGTCTTGCCAGCTTAGGTCATTTGCACAACTAACGTCAAGCTTCCTATTTAGTCTGTCAGTGATTCATTTAGTCTCACAGGCTTCCAGAAATCTAAAAATTCATTTTCTCTTCAGTTTACTAGTTATTGACAATGGTTTATTCACTTACTATTCCACTGAGTGAGGTGAGCTTATTGGACGGTAGAGTTTTATCCATAATTGTGAACTGGGCCTTCGCGAGCCCTGCCATAGTTTCTTTTAGAATCAATGTTTTTGGACAAATTATTATAAATAACATGACAGAATTCAATGAGTACTACAAAATGCACTTTTTTAGAAAACGTTATCTTGTCTATGAACAAAGTTACAAGGAGAAAACCGTTGGAGCTGCGCACTCACATCTATCTGGCCTTGTAAATTTGTTCATAGACAAGATACAGATTTTCCAATAGTGTCAATTTGTAGTACTCAACAAGTTCTGTCATATCAAATTTACCTGGCCCAAGAATATTTGTTCTGAAAAAATCTATGGCAAAGCCCACAAAGGCCCACTTTACGAGTATGGTTTTATCAATTTTTCATCAAATTTTAGGATTTCGGGGAAATCCCAGAATCTGCCAAAGACGGGGTTTATTACGCTGTCGTTACACTTTTTGTGAGTTCAACATTGGCGTCCACACTGCTCAGCGCAGCATTTCTAGTCCTATCAATTATACTTTGGGGACGTTTCAAACCGGTGAGTGCTAATT</canonical>
            <polymorphic>TTTACTAGTCAATGTCGGATTATTCATTTAGTGTACCATTGAGTGAGGTGAGATTTCGGAGACTACATGGGGCATTTTGAGCGATTTCCTGTGATAGTTGGCTGCCTTGCTTCTACCGTAGAGGAAAAGGCGCCCAGACGGTGGGCAACATGCTCAAAACCTGGGTAATTTGCCCAAGTCTACCCGAAGCATGTCCAACTTGTGCCTCAAGCTTGCCGCAAAAAGATGAGGATCAGTTTTGCTATTCTTTTTACAAAATCTTGTCCAAACGAGTCTTGCCAGCTTAGGTCATTTGCACAACTAACGTCAAGCTTCCTATTTAGTCTGTCAGTGATTCATTTAGTCTCACAGGCTTCCAGAAATCTAAAAATTCATTTTCTCTTCAGTTTACTAGTTATTGACAATGGTTTATTCACTTACTATTCCACTGAGTGAGGTGAGCTTATTGGACGGTAGAGTTTTATCCATAATTGTGAACTGGGCCTTCGCGAGCCCTGCCMTAGTTTCTTTTAGAATCAATGTTTTTGGACAAATTATTATAAATAACATGACAGAATTCAATGAGTACTACAAAATGCACTTTTTTAGAAAACGTTATCTTGTCTATGAACAAAGTTACAAGGAGAAAACCGTTGGAGCTGCGCACTCACATCTATCTGGCCTTGTAAATTTGTTCATAGACAAGATACAGATTTTCCAATAGTGTCAATTTGTAGTACTCAACAAGTTCTGTCATATCAAATTTACCTGGCCCAAGAATATTTGTTCTGAAAAAATCTATGGCAAAGCCCACAAAGGCCCACTTTACGAGTATGGTTTTATCAATTTTTCATCAAATTTTAGGATTTCGGGGAAATCCCAGAATCTGCCAAAGACGGGGTTTATTACGCTGTCGTTACACTTTTTGTGAGTTCAACATTGGCGTCCACACTGCTCAGCGCAGCATTTCTAGTCCTATCAATTATACTTTGGGGACGTTTCAAACCGGTGAGTGCTAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAGTGAGGTGAGCTTATTG</pcr_primer_p1>
		<pcr_primer_p2>ATAAAACCATACTCGTAAAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>CTGAGTGAGGTGAGCTTATTGGACGGTAGAGTTTTATCCATAATTGTGAACTGGGCCTTCGCGAGCCCTGCCATAGTTTCTTTTAGAATCAATGTTTTTGGACAAATTATTATAAATAACATGACAGAATTCAATGAGTACTACAAAATGCACTTTTTTAGAAAACGTTATCTTGTCTATGAACAAAGTTACAAGGAGAAAACCGTTGGAGCTGCGCACTCACATCTATCTGGCCTTGTAAATTTGTTCATAGACAAGATACAGATTTTCCAATAGTGTCAATTTGTAGTACTCAACAAGTTCTGTCATATCAAATTTACCTGGCCCAAGAATATTTGTTCTGAAAAAATCTATGGCAAAGCCCACAAAGGCCCACTTTACGAGTATGGTTTTAT</canonical_amplicon>
		<polymorphic_amplicon>CTGAGTGAGGTGAGCTTATTGGACGGTAGAGTTTTATCCATAATTGTGAACTGGGCCTTCGCGAGCCCTGCCMTAGTTTCTTTTAGAATCAATGTTTTTGGACAAATTATTATAAATAACATGACAGAATTCAATGAGTACTACAAAATGCACTTTTTTAGAAAACGTTATCTTGTCTATGAACAAAGTTACAAGGAGAAAACCGTTGGAGCTGCGCACTCACATCTATCTGGCCTTGTAAATTTGTTCATAGACAAGATACAGATTTTCCAATAGTGTCAATTTGTAGTACTCAACAAGTTCTGTCATATCAAATTTACCTGGCCCAAGAATATTTGTTCTGAAAAAATCTATGGCAAAGCCCACAAAGGCCCACTTTACGAGTATGGTTTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39432</snp_id>
        <super_contig>c013700708.Contig1</super_contig>
        <contig_pos>12589</contig_pos>
        <strand></strand>
        <context>ttataaataa[C/T]atgacagaat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCATAGTTTCTTTTAGAATCAATGTTTTTGGACAAATTATTATAAATAA</left_flank>
        <right_flank>ATGACAGAATTCAATGAGTACTACAAAATGCACTTTTTTAGAAAACGTTA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGAGATTTCGGAGACTACATGGGGCATTTTGAGCGATTTCCTGTGATAGTTGGCTGCCTTGCTTCTACCGTAGAGGAAAAGGCGCCCAGACGGTGGGCAACATGCTCAAAACCTGGGTAATTTGCCCAAGTCTACCCGAAGCATGTCCAACTTGTGCCTCAAGCTTGCCGCAAAAAGATGAGGATCAGTTTTGCTATTCTTTTTACAAAATCTTGTCCAAACGAGTCTTGCCAGCTTAGGTCATTTGCACAACTAACGTCAAGCTTCCTATTTAGTCTGTCAGTGATTCATTTAGTCTCACAGGCTTCCAGAAATCTAAAAATTCATTTTCTCTTCAGTTTACTAGTTATTGACAATGGTTTATTCACTTACTATTCCACTGAGTGAGGTGAGCTTATTGGACGGTAGAGTTTTATCCATAATTGTGAACTGGGCCTTCGCGAGCCCTGCCATAGTTTCTTTTAGAATCAATGTTTTTGGACAAATTATTATAAATAACATGACAGAATTCAATGAGTACTACAAAATGCACTTTTTTAGAAAACGTTATCTTGTCTATGAACAAAGTTACAAGGAGAAAACCGTTGGAGCTGCGCACTCACATCTATCTGGCCTTGTAAATTTGTTCATAGACAAGATACAGATTTTCCAATAGTGTCAATTTGTAGTACTCAACAAGTTCTGTCATATCAAATTTACCTGGCCCAAGAATATTTGTTCTGAAAAAATCTATGGCAAAGCCCACAAAGGCCCACTTTACGAGTATGGTTTTATCAATTTTTCATCAAATTTTAGGATTTCGGGGAAATCCCAGAATCTGCCAAAGACGGGGTTTATTACGCTGTCGTTACACTTTTTGTGAGTTCAACATTGGCGTCCACACTGCTCAGCGCAGCATTTCTAGTCCTATCAATTATACTTTGGGGACGTTTCAAACCGGTGAGTGCTAATTGGTCGCATTTGCAGACTTTTAAAAATTCCAGATAAAATTCTTCTGGT</canonical>
            <polymorphic>GTGAGATTTCGGAGACTACATGGGGCATTTTGAGCGATTTCCTGTGATAGTTGGCTGCCTTGCTTCTACCGTAGAGGAAAAGGCGCCCAGACGGTGGGCAACATGCTCAAAACCTGGGTAATTTGCCCAAGTCTACCCGAAGCATGTCCAACTTGTGCCTCAAGCTTGCCGCAAAAAGATGAGGATCAGTTTTGCTATTCTTTTTACAAAATCTTGTCCAAACGAGTCTTGCCAGCTTAGGTCATTTGCACAACTAACGTCAAGCTTCCTATTTAGTCTGTCAGTGATTCATTTAGTCTCACAGGCTTCCAGAAATCTAAAAATTCATTTTCTCTTCAGTTTACTAGTTATTGACAATGGTTTATTCACTTACTATTCCACTGAGTGAGGTGAGCTTATTGGACGGTAGAGTTTTATCCATAATTGTGAACTGGGCCTTCGCGAGCCCTGCCATAGTTTCTTTTAGAATCAATGTTTTTGGACAAATTATTATAAATAAYATGACAGAATTCAATGAGTACTACAAAATGCACTTTTTTAGAAAACGTTATCTTGTCTATGAACAAAGTTACAAGGAGAAAACCGTTGGAGCTGCGCACTCACATCTATCTGGCCTTGTAAATTTGTTCATAGACAAGATACAGATTTTCCAATAGTGTCAATTTGTAGTACTCAACAAGTTCTGTCATATCAAATTTACCTGGCCCAAGAATATTTGTTCTGAAAAAATCTATGGCAAAGCCCACAAAGGCCCACTTTACGAGTATGGTTTTATCAATTTTTCATCAAATTTTAGGATTTCGGGGAAATCCCAGAATCTGCCAAAGACGGGGTTTATTACGCTGTCGTTACACTTTTTGTGAGTTCAACATTGGCGTCCACACTGCTCAGCGCAGCATTTCTAGTCCTATCAATTATACTTTGGGGACGTTTCAAACCGGTGAGTGCTAATTGGTCGCATTTGCAGACTTTTAAAAATTCCAGATAAAATTCTTCTGGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>500 357 83 41 19</canonical_bands>
                <polymorphic_bands>857 83 41 19</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAGTGAGGTGAGCTTATTG</pcr_primer_p1>
		<pcr_primer_p2>ATAAAACCATACTCGTAAAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>CTGAGTGAGGTGAGCTTATTGGACGGTAGAGTTTTATCCATAATTGTGAACTGGGCCTTCGCGAGCCCTGCCATAGTTTCTTTTAGAATCAATGTTTTTGGACAAATTATTATAAATAACATGACAGAATTCAATGAGTACTACAAAATGCACTTTTTTAGAAAACGTTATCTTGTCTATGAACAAAGTTACAAGGAGAAAACCGTTGGAGCTGCGCACTCACATCTATCTGGCCTTGTAAATTTGTTCATAGACAAGATACAGATTTTCCAATAGTGTCAATTTGTAGTACTCAACAAGTTCTGTCATATCAAATTTACCTGGCCCAAGAATATTTGTTCTGAAAAAATCTATGGCAAAGCCCACAAAGGCCCACTTTACGAGTATGGTTTTAT</canonical_amplicon>
		<polymorphic_amplicon>CTGAGTGAGGTGAGCTTATTGGACGGTAGAGTTTTATCCATAATTGTGAACTGGGCCTTCGCGAGCCCTGCCATAGTTTCTTTTAGAATCAATGTTTTTGGACAAATTATTATAAATAAYATGACAGAATTCAATGAGTACTACAAAATGCACTTTTTTAGAAAACGTTATCTTGTCTATGAACAAAGTTACAAGGAGAAAACCGTTGGAGCTGCGCACTCACATCTATCTGGCCTTGTAAATTTGTTCATAGACAAGATACAGATTTTCCAATAGTGTCAATTTGTAGTACTCAACAAGTTCTGTCATATCAAATTTACCTGGCCCAAGAATATTTGTTCTGAAAAAATCTATGGCAAAGCCCACAAAGGCCCACTTTACGAGTATGGTTTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39433</snp_id>
        <super_contig>c013700708.Contig1</super_contig>
        <contig_pos>15251</contig_pos>
        <strand>+</strand>
        <context>ATTACAAAWA[A/T]CGGATCTGTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATACGATCCGATACGATCCGAATTGTAAGAATAATTTTGAATTACAAATA</left_flank>
        <right_flank>CGGATCTGTGATTTCAGATAGACACTATGCTACAAATAATTCTTCCGATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTACAGTAGTAGCAACATTTTTTAGCGCCGGGTATCTGGTGCTGTCTATTGTTTTATGGAGCCATTTTAAGCCGGTAAGAAAACCAGAAATTTCAATTATGTGAAAAAATATCTCAGATTCGATTTTTCTGGTTTTTAACACAACTAAACATAACGGTCTTTGTTTTATCTGCTTCAAATTTGCTGATAAATGTTCCAGCCACACTTAAACTGCTACCGGTTAACTTTGGAACCTCAGGTAACTTTGAGCCATTTTATCTCAGTTCCTGTGAAAGATATAAAAAAGTGGTCAACTGATAAAATGCTTATCATAGTATTACCAACATTGTATCAGTTAAAATTTTTTTGATATCTTGCTTGGGAAATGAGATAATTGAGCTCAAACCGCTTCTTCAGCAACCACTACTATCAATAAAGCGATACCTACTATACGATCCGAATTGTAACTATACGATCCGATACGATCCGAATTGTAAGAATAATTTTGAATTACAAATAACGGATCTGTGATTTCAGATAGACACTATGCTACAAATAATTCTTCCGATTTTTATTTTTTGCATTTATTTCGCTATTATTGTCAAAATTCTTTATATGAGGAGATTCACTCTCAGTGATAGTGAACGCTCAATTTTGAAGCAAGCGCTCTTTGTTTTCGTGGCGTTTCAGGTTGGAATTACGATTTTATACCGTAAAGCCTGTAATAGAAGGGCCCCCACACTGTGAAGTTAAAACTAATTAGTCCTGATTCCTATGCAAAATATCAAAAATGTGTCAACTGATGAAATTTTATTGGTATTTTGATGAACAATTCATCAATTGGACACTTTTTTGTATCTTCAAGAGTAACCTAGATTAATTGGCTCAAAGTTAAAAGTTTTTGGGGCTCTTCTATTAGAGGTTTGACAGTATATATTATTGTTACAGACTCCCTCGTTGATATTTTTATCCTTTCAAAGTATTCAAATCACAAATACAGGAGCATTTCTAGTGAAACGA</canonical>
            <polymorphic>GCTACAGTAGTAGCAACATTTTTTAGCGCCGGGTATCTGGTGCTGTCTATTGTTTTATGGAGCCATTTTAAGCCGGTAAGAAAACCAGAAATTTCAATTATGTGAAAAAATATCTCAGATTCGATTTTTCTGGTTTTTAACACAACTAAACATAACGGTCTTTGTTTTATCTGCTTCAAATTTGCTGATAAATGTTCCAGCCACACTTAAACTGCTACCGGTTAACTTTGGAACCTCAGGTAACTTTGAGCCATTTTATCTCAGTTCCTGTGAAAGATATAAAAAAGTGGTCAACTGATAAAATGCTTATCATAGTATTACCAACATTGTATCAGTTAAAATTTTTTTGATATCTTGCTTGGGAAATGAGATAATTGAGCTCAAACCGCTTCTTCAGCAACCACTACTATCAATAAAGCGATACCTACTATACGATCCGAATTGTAACTATACGATCCGATACGATCCGAATTGTAAGAATAATTTTGAATTACAAATAWCGGATCTGTGATTTCAGATAGACACTATGCTACAAATAATTCTTCCGATTTTTATTTTTTGCATTTATTTCGCTATTATTGTCAAAATTCTTTATATGAGGAGATTCACTCTCAGTGATAGTGAACGCTCAATTTTGAAGCAAGCGCTCTTTGTTTTCGTGGCGTTTCAGGTTGGAATTACGATTTTATACCGTAAAGCCTGTAATAGAAGGGCCCCCACACTGTGAAGTTAAAACTAATTAGTCCTGATTCCTATGCAAAATATCAAAAATGTGTCAACTGATGAAATTTTATTGGTATTTTGATGAACAATTCATCAATTGGACACTTTTTTGTATCTTCAAGAGTAACCTAGATTAATTGGCTCAAAGTTAAAAGTTTTTGGGGCTCTTCTATTAGAGGTTTGACAGTATATATTATTGTTACAGACTCCCTCGTTGATATTTTTATCCTTTCAAAGTATTCAAATCACAAATACAGGAGCATTTCTAGTGAAACGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTTCAGCAACCACTACTATC</pcr_primer_p1>
		<pcr_primer_p2>AAAATTGAGCGTTCACTATCAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTTCTTCAGCAACCACTACTATCAATAAAGCGATACCTACTATACGATCCGAATTGTAACTATACGATCCGATACGATCCGAATTGTAAGAATAATTTTGAATTACAAATAACGGATCTGTGATTTCAGATAGACACTATGCTACAAATAATTCTTCCGATTTTTATTTTTTGCATTTATTTCGCTATTATTGTCAAAATTCTTTATATGAGGAGATTCACTCTCAGTGATAGTGAACGCTCAATTTT</canonical_amplicon>
		<polymorphic_amplicon>CTTCTTCAGCAACCACTACTATCAATAAAGCGATACCTACTATACGATCCGAATTGTAACTATACGATCCGATACGATCCGAATTGTAAGAATAATTTTGAATTACAAATAWCGGATCTGTGATTTCAGATAGACACTATGCTACAAATAATTCTTCCGATTTTTATTTTTTGCATTTATTTCGCTATTATTGTCAAAATTCTTTATATGAGGAGATTCACTCTCAGTGATAGTGAACGCTCAATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39434</snp_id>
        <super_contig>c013700708.Contig1</super_contig>
        <contig_pos>15611</contig_pos>
        <strand></strand>
        <context>acctagatta[A/C]ttggctcaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAATTCATCAATTGGACACTTTTTTGTATCTTCAAGAGTAACCTAGATTA</left_flank>
        <right_flank>TTGGCTCAAAGTTAAAAGTTTTTGGGGCTCTTCTATTAGAGGTTTGACAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGAAATGAGATAATTGAGCTCAAACCGCTTCTTCAGCAACCACTACTATCAATAAAGCGATACCTACTATACGATCCGAATTGTAACTATACGATCCGATACGATCCGAATTGTAAGAATAATTTTGAATTACAAATAACGGATCTGTGATTTCAGATAGACACTATGCTACAAATAATTCTTCCGATTTTTATTTTTTGCATTTATTTCGCTATTATTGTCAAAATTCTTTATATGAGGAGATTCACTCTCAGTGATAGTGAACGCTCAATTTTGAAGCAAGCGCTCTTTGTTTTCGTGGCGTTTCAGGTTGGAATTACGATTTTATACCGTAAAGCCTGTAATAGAAGGGCCCCCACACTGTGAAGTTAAAACTAATTAGTCCTGATTCCTATGCAAAATATCAAAAATGTGTCAACTGATGAAATTTTATTGGTATTTTGATGAACAATTCATCAATTGGACACTTTTTTGTATCTTCAAGAGTAACCTAGATTAATTGGCTCAAAGTTAAAAGTTTTTGGGGCTCTTCTATTAGAGGTTTGACAGTATATATTATTGTTACAGACTCCCTCGTTGATATTTTTATCCTTTCAAAGTATTCAAATCACAAATACAGGAGCATTTCTAGTGAAACGATTTGTGAATACTGTAAGCTTTCAGAAAATCTGCAAAACGGATTTTCCTAATTTCAGATGGAAATTATTTCTGGCGCTGCCACGCCGTCATTTTTCTTCTTCACTTCTAAAGAGATTCGAAAACTGGTTTCAATAAGAGTTTCAGCAGTCAGTTCACAGAATGGATCGAATGTTCGAGAACGAGGGATTCGTTCTTTGTGATACCTGCAATAGAAGGGCTCTCTAACTTTTCACGATGAGCTAATTTATTTTGGTTCCTTTAATAAAATGTTTATCATAATATTTTTCTGTTGACACATTTTTGATATTACAAGTTTCACAATATCGAAATTAGAAAAAAAAATACTCACATCATCCAATC</canonical>
            <polymorphic>GGGAAATGAGATAATTGAGCTCAAACCGCTTCTTCAGCAACCACTACTATCAATAAAGCGATACCTACTATACGATCCGAATTGTAACTATACGATCCGATACGATCCGAATTGTAAGAATAATTTTGAATTACAAATAACGGATCTGTGATTTCAGATAGACACTATGCTACAAATAATTCTTCCGATTTTTATTTTTTGCATTTATTTCGCTATTATTGTCAAAATTCTTTATATGAGGAGATTCACTCTCAGTGATAGTGAACGCTCAATTTTGAAGCAAGCGCTCTTTGTTTTCGTGGCGTTTCAGGTTGGAATTACGATTTTATACCGTAAAGCCTGTAATAGAAGGGCCCCCACACTGTGAAGTTAAAACTAATTAGTCCTGATTCCTATGCAAAATATCAAAAATGTGTCAACTGATGAAATTTTATTGGTATTTTGATGAACAATTCATCAATTGGACACTTTTTTGTATCTTCAAGAGTAACCTAGATTAMTTGGCTCAAAGTTAAAAGTTTTTGGGGCTCTTCTATTAGAGGTTTGACAGTATATATTATTGTTACAGACTCCCTCGTTGATATTTTTATCCTTTCAAAGTATTCAAATCACAAATACAGGAGCATTTCTAGTGAAACGATTTGTGAATACTGTAAGCTTTCAGAAAATCTGCAAAACGGATTTTCCTAATTTCAGATGGAAATTATTTCTGGCGCTGCCACGCCGTCATTTTTCTTCTTCACTTCTAAAGAGATTCGAAAACTGGTTTCAATAAGAGTTTCAGCAGTCAGTTCACAGAATGGATCGAATGTTCGAGAACGAGGGATTCGTTCTTTGTGATACCTGCAATAGAAGGGCTCTCTAACTTTTCACGATGAGCTAATTTATTTTGGTTCCTTTAATAAAATGTTTATCATAATATTTTTCTGTTGACACATTTTTGATATTACAAGTTTCACAATATCGAAATTAGAAAAAAAAATACTCACATCATCCAATC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ATTAAT</site>
                <isoschizomers>
                    <enzyme>AseI</enzyme>
                    <enzyme>AsnI</enzyme>
                    <enzyme>PshBI</enzyme>
                    <enzyme>VspI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>387 370 127 101 15</canonical_bands>
                <polymorphic_bands>387 370 142 101</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>190 180 86 67 62 49 49 48 45 45 40 33 30 24 13 12 12 8 7</canonical_bands>
                <polymorphic_bands>230 180 86 67 62 49 49 48 45 45 33 30 24 13 12 12 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGGTTGGAATTACGATTTTAT</pcr_primer_p1>
		<pcr_primer_p2>ACTTTGAAAGGATAAAAATATCAAC</pcr_primer_p2>
		<pcr_amplicon_size>294</pcr_amplicon_size>
		<canonical_amplicon>CAGGTTGGAATTACGATTTTATACCGTAAAGCCTGTAATAGAAGGGCCCCCACACTGTGAAGTTAAAACTAATTAGTCCTGATTCCTATGCAAAATATCAAAAATGTGTCAACTGATGAAATTTTATTGGTATTTTGATGAACAATTCATCAATTGGACACTTTTTTGTATCTTCAAGAGTAACCTAGATTAATTGGCTCAAAGTTAAAAGTTTTTGGGGCTCTTCTATTAGAGGTTTGACAGTATATATTATTGTTACAGACTCCCTCGTTGATATTTTTATCCTTTCAAAGT</canonical_amplicon>
		<polymorphic_amplicon>CAGGTTGGAATTACGATTTTATACCGTAAAGCCTGTAATAGAAGGGCCCCCACACTGTGAAGTTAAAACTAATTAGTCCTGATTCCTATGCAAAATATCAAAAATGTGTCAACTGATGAAATTTTATTGGTATTTTGATGAACAATTCATCAATTGGACACTTTTTTGTATCTTCAAGAGTAACCTAGATTAMTTGGCTCAAAGTTAAAAGTTTTTGGGGCTCTTCTATTAGAGGTTTGACAGTATATATTATTGTTACAGACTCCCTCGTTGATATTTTTATCCTTTCAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39435</snp_id>
        <super_contig>c013700708.Contig1</super_contig>
        <contig_pos>15628</contig_pos>
        <strand></strand>
        <context>caaagttaaa[A/C]gtttttgggg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACTTTTTTGTATCTTCAAGAGTAACCTAGATTAATTGGCTCAAAGTTAAA</left_flank>
        <right_flank>GTTTTTGGGGCTCTTCTATTAGAGGTTTGACAGTATATATTATTGTTACA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCTCAAACCGCTTCTTCAGCAACCACTACTATCAATAAAGCGATACCTACTATACGATCCGAATTGTAACTATACGATCCGATACGATCCGAATTGTAAGAATAATTTTGAATTACAAATAACGGATCTGTGATTTCAGATAGACACTATGCTACAAATAATTCTTCCGATTTTTATTTTTTGCATTTATTTCGCTATTATTGTCAAAATTCTTTATATGAGGAGATTCACTCTCAGTGATAGTGAACGCTCAATTTTGAAGCAAGCGCTCTTTGTTTTCGTGGCGTTTCAGGTTGGAATTACGATTTTATACCGTAAAGCCTGTAATAGAAGGGCCCCCACACTGTGAAGTTAAAACTAATTAGTCCTGATTCCTATGCAAAATATCAAAAATGTGTCAACTGATGAAATTTTATTGGTATTTTGATGAACAATTCATCAATTGGACACTTTTTTGTATCTTCAAGAGTAACCTAGATTAATTGGCTCAAAGTTAAAAGTTTTTGGGGCTCTTCTATTAGAGGTTTGACAGTATATATTATTGTTACAGACTCCCTCGTTGATATTTTTATCCTTTCAAAGTATTCAAATCACAAATACAGGAGCATTTCTAGTGAAACGATTTGTGAATACTGTAAGCTTTCAGAAAATCTGCAAAACGGATTTTCCTAATTTCAGATGGAAATTATTTCTGGCGCTGCCACGCCGTCATTTTTCTTCTTCACTTCTAAAGAGATTCGAAAACTGGTTTCAATAAGAGTTTCAGCAGTCAGTTCACAGAATGGATCGAATGTTCGAGAACGAGGGATTCGTTCTTTGTGATACCTGCAATAGAAGGGCTCTCTAACTTTTCACGATGAGCTAATTTATTTTGGTTCCTTTAATAAAATGTTTATCATAATATTTTTCTGTTGACACATTTTTGATATTACAAGTTTCACAATATCGAAATTAGAAAAAAAAATACTCACATCATCCAATCTCCCACTATAACCCAAT</canonical>
            <polymorphic>AGCTCAAACCGCTTCTTCAGCAACCACTACTATCAATAAAGCGATACCTACTATACGATCCGAATTGTAACTATACGATCCGATACGATCCGAATTGTAAGAATAATTTTGAATTACAAATAACGGATCTGTGATTTCAGATAGACACTATGCTACAAATAATTCTTCCGATTTTTATTTTTTGCATTTATTTCGCTATTATTGTCAAAATTCTTTATATGAGGAGATTCACTCTCAGTGATAGTGAACGCTCAATTTTGAAGCAAGCGCTCTTTGTTTTCGTGGCGTTTCAGGTTGGAATTACGATTTTATACCGTAAAGCCTGTAATAGAAGGGCCCCCACACTGTGAAGTTAAAACTAATTAGTCCTGATTCCTATGCAAAATATCAAAAATGTGTCAACTGATGAAATTTTATTGGTATTTTGATGAACAATTCATCAATTGGACACTTTTTTGTATCTTCAAGAGTAACCTAGATTAATTGGCTCAAAGTTAAAMGTTTTTGGGGCTCTTCTATTAGAGGTTTGACAGTATATATTATTGTTACAGACTCCCTCGTTGATATTTTTATCCTTTCAAAGTATTCAAATCACAAATACAGGAGCATTTCTAGTGAAACGATTTGTGAATACTGTAAGCTTTCAGAAAATCTGCAAAACGGATTTTCCTAATTTCAGATGGAAATTATTTCTGGCGCTGCCACGCCGTCATTTTTCTTCTTCACTTCTAAAGAGATTCGAAAACTGGTTTCAATAAGAGTTTCAGCAGTCAGTTCACAGAATGGATCGAATGTTCGAGAACGAGGGATTCGTTCTTTGTGATACCTGCAATAGAAGGGCTCTCTAACTTTTCACGATGAGCTAATTTATTTTGGTTCCTTTAATAAAATGTTTATCATAATATTTTTCTGTTGACACATTTTTGATATTACAAGTTTCACAATATCGAAATTAGAAAAAAAAATACTCACATCATCCAATCTCCCACTATAACCCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGTTGGAATTACGATTTTAT</pcr_primer_p1>
		<pcr_primer_p2>ACTTTGAAAGGATAAAAATATCAAC</pcr_primer_p2>
		<pcr_amplicon_size>294</pcr_amplicon_size>
		<canonical_amplicon>CAGGTTGGAATTACGATTTTATACCGTAAAGCCTGTAATAGAAGGGCCCCCACACTGTGAAGTTAAAACTAATTAGTCCTGATTCCTATGCAAAATATCAAAAATGTGTCAACTGATGAAATTTTATTGGTATTTTGATGAACAATTCATCAATTGGACACTTTTTTGTATCTTCAAGAGTAACCTAGATTAATTGGCTCAAAGTTAAAAGTTTTTGGGGCTCTTCTATTAGAGGTTTGACAGTATATATTATTGTTACAGACTCCCTCGTTGATATTTTTATCCTTTCAAAGT</canonical_amplicon>
		<polymorphic_amplicon>CAGGTTGGAATTACGATTTTATACCGTAAAGCCTGTAATAGAAGGGCCCCCACACTGTGAAGTTAAAACTAATTAGTCCTGATTCCTATGCAAAATATCAAAAATGTGTCAACTGATGAAATTTTATTGGTATTTTGATGAACAATTCATCAATTGGACACTTTTTTGTATCTTCAAGAGTAACCTAGATTAATTGGCTCAAAGTTAAAMGTTTTTGGGGCTCTTCTATTAGAGGTTTGACAGTATATATTATTGTTACAGACTCCCTCGTTGATATTTTTATCCTTTCAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39436</snp_id>
        <super_contig>c013700708.Contig1</super_contig>
        <contig_pos>15652</contig_pos>
        <strand>+</strand>
        <context>ttctattaga[C/T]gtttgacagt</context>
        <canonical_base>G</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTAGATTAATTGGCTCAAAGTTAAAAGTTTTTGGGGCTCTTCTATTAGA</left_flank>
        <right_flank>GTTTGACAGTATATATTATTGTTACAGACTCCCTCGTTGATATTTTTATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACTACTATCAATAAAGCGATACCTACTATACGATCCGAATTGTAACTATACGATCCGATACGATCCGAATTGTAAGAATAATTTTGAATTACAAATAACGGATCTGTGATTTCAGATAGACACTATGCTACAAATAATTCTTCCGATTTTTATTTTTTGCATTTATTTCGCTATTATTGTCAAAATTCTTTATATGAGGAGATTCACTCTCAGTGATAGTGAACGCTCAATTTTGAAGCAAGCGCTCTTTGTTTTCGTGGCGTTTCAGGTTGGAATTACGATTTTATACCGTAAAGCCTGTAATAGAAGGGCCCCCACACTGTGAAGTTAAAACTAATTAGTCCTGATTCCTATGCAAAATATCAAAAATGTGTCAACTGATGAAATTTTATTGGTATTTTGATGAACAATTCATCAATTGGACACTTTTTTGTATCTTCAAGAGTAACCTAGATTAATTGGCTCAAAGTTAAAAGTTTTTGGGGCTCTTCTATTAGAGGTTTGACAGTATATATTATTGTTACAGACTCCCTCGTTGATATTTTTATCCTTTCAAAGTATTCAAATCACAAATACAGGAGCATTTCTAGTGAAACGATTTGTGAATACTGTAAGCTTTCAGAAAATCTGCAAAACGGATTTTCCTAATTTCAGATGGAAATTATTTCTGGCGCTGCCACGCCGTCATTTTTCTTCTTCACTTCTAAAGAGATTCGAAAACTGGTTTCAATAAGAGTTTCAGCAGTCAGTTCACAGAATGGATCGAATGTTCGAGAACGAGGGATTCGTTCTTTGTGATACCTGCAATAGAAGGGCTCTCTAACTTTTCACGATGAGCTAATTTATTTTGGTTCCTTTAATAAAATGTTTATCATAATATTTTTCTGTTGACACATTTTTGATATTACAAGTTTCACAATATCGAAATTAGAAAAAAAAATACTCACATCATCCAATCTCCCACTATAACCCAATAAGTGAATCCTCATCGAGAAATTG</canonical>
            <polymorphic>CACTACTATCAATAAAGCGATACCTACTATACGATCCGAATTGTAACTATACGATCCGATACGATCCGAATTGTAAGAATAATTTTGAATTACAAATAACGGATCTGTGATTTCAGATAGACACTATGCTACAAATAATTCTTCCGATTTTTATTTTTTGCATTTATTTCGCTATTATTGTCAAAATTCTTTATATGAGGAGATTCACTCTCAGTGATAGTGAACGCTCAATTTTGAAGCAAGCGCTCTTTGTTTTCGTGGCGTTTCAGGTTGGAATTACGATTTTATACCGTAAAGCCTGTAATAGAAGGGCCCCCACACTGTGAAGTTAAAACTAATTAGTCCTGATTCCTATGCAAAATATCAAAAATGTGTCAACTGATGAAATTTTATTGGTATTTTGATGAACAATTCATCAATTGGACACTTTTTTGTATCTTCAAGAGTAACCTAGATTAATTGGCTCAAAGTTAAAAGTTTTTGGGGCTCTTCTATTAGAYGTTTGACAGTATATATTATTGTTACAGACTCCCTCGTTGATATTTTTATCCTTTCAAAGTATTCAAATCACAAATACAGGAGCATTTCTAGTGAAACGATTTGTGAATACTGTAAGCTTTCAGAAAATCTGCAAAACGGATTTTCCTAATTTCAGATGGAAATTATTTCTGGCGCTGCCACGCCGTCATTTTTCTTCTTCACTTCTAAAGAGATTCGAAAACTGGTTTCAATAAGAGTTTCAGCAGTCAGTTCACAGAATGGATCGAATGTTCGAGAACGAGGGATTCGTTCTTTGTGATACCTGCAATAGAAGGGCTCTCTAACTTTTCACGATGAGCTAATTTATTTTGGTTCCTTTAATAAAATGTTTATCATAATATTTTTCTGTTGACACATTTTTGATATTACAAGTTTCACAATATCGAAATTAGAAAAAAAAATACTCACATCATCCAATCTCCCACTATAACCCAATAAGTGAATCCTCATCGAGAAATTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGGTTGGAATTACGATTTTAT</pcr_primer_p1>
		<pcr_primer_p2>ACTTTGAAAGGATAAAAATATCAAC</pcr_primer_p2>
		<pcr_amplicon_size>294</pcr_amplicon_size>
		<canonical_amplicon>CAGGTTGGAATTACGATTTTATACCGTAAAGCCTGTAATAGAAGGGCCCCCACACTGTGAAGTTAAAACTAATTAGTCCTGATTCCTATGCAAAATATCAAAAATGTGTCAACTGATGAAATTTTATTGGTATTTTGATGAACAATTCATCAATTGGACACTTTTTTGTATCTTCAAGAGTAACCTAGATTAATTGGCTCAAAGTTAAAAGTTTTTGGGGCTCTTCTATTAGAGGTTTGACAGTATATATTATTGTTACAGACTCCCTCGTTGATATTTTTATCCTTTCAAAGT</canonical_amplicon>
		<polymorphic_amplicon>CAGGTTGGAATTACGATTTTATACCGTAAAGCCTGTAATAGAAGGGCCCCCACACTGTGAAGTTAAAACTAATTAGTCCTGATTCCTATGCAAAATATCAAAAATGTGTCAACTGATGAAATTTTATTGGTATTTTGATGAACAATTCATCAATTGGACACTTTTTTGTATCTTCAAGAGTAACCTAGATTAATTGGCTCAAAGTTAAAAGTTTTTGGGGCTCTTCTATTAGAYGTTTGACAGTATATATTATTGTTACAGACTCCCTCGTTGATATTTTTATCCTTTCAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39437</snp_id>
        <super_contig>c013701045.Contig1</super_contig>
        <contig_pos>8160</contig_pos>
        <strand>+</strand>
        <context>ATCTCAAGTA[C/T]AATCCCGACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGGTGGTCATCTCCATTCTGAGTATGATTCTGGATTTCTATCTCAAGTA</left_flank>
        <right_flank>AATCCCGACAAACATTGGGCTCATCTATTCTACGGAGCAAGTCCAATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAAGAAGAAGGGACCGCCCTTTTTTCCTAGAGCAAGAGCCAGAAAGAATTTCATTTTTCTCACAACACACAAACTTTTGAGTGGCAGCAGCTCCTTTGAGAAAAAAGAAGAAAAAGGATGACTTTTTGCGAAAATAAGGTGAGATTTTTTTAATTTTCAAAGGTCTTCTGAATCTGTTGGACCCATCCAAACTCTCTAAAAAAGCCAAAAAGAAATAAAAAGCCCACCGGACTTGAACCCGCGTCGCGTGGGCAAAAGCGCAGCCCGCAACCACTATACCACGGTCGACCACAAGTGAACAAGGGCGTAGATGGCGTAGACAATACGCGGCCTTTTGTGAGTGGGTGGCGAGCCACGACGACATTCATGAAAAGTCGAAAATTTTCAAAAATTTCAAAAATCTCAAAATTTCCAGAATCTCCCCAAACCACCGTCGGATCGATGTCAAGTGGTGGTCATCTCCATTCTGAGTATGATTCTGGATTTCTATCTCAAGTACAATCCCGACAAACATTGGGCTCATCTATTCTACGGAGCAAGTCCAATTTTGGAGATTTTGGTCATTTTTGGAATGTTGGCGAACTCGGTGTATGGCAACAAATTGGCTATGTTTGCTTGTGTGAGTTTAGTGGAGTAGGAACTCGCAGCTCGCTGCCGACCGACAATTTAAATTTTTGAATTCCCGCCAAATCTGGCGCCGAAGGATTTTTGGCCATAACTCGGCTCAAACTTAGTATAGAACGCTGAAACAAGCACCAAATAAATTTTACATATGCTGAAACCAAAAAAAAATAAAATTTCCGAATTTTCCAAAAAATTAGCAAAATCGAATTTTCCAGGTCCTCGACTTGGTCTCTGGCGTGTTCTGTCTTTTGACTCTTCCAGTCATTTCTGTTGCTGAAAATGCCACTGGTGTCCGCTTGCACCTTCCATACATCTCCACTTTCCATTCGCAGTTTTCTTTCCAAGTCTCAACTCCAGTGGACCTTTTCTATGTTG</canonical>
            <polymorphic>CAAAGAAGAAGGGACCGCCCTTTTTTCCTAGAGCAAGAGCCAGAAAGAATTTCATTTTTCTCACAACACACAAACTTTTGAGTGGCAGCAGCTCCTTTGAGAAAAAAGAAGAAAAAGGATGACTTTTTGCGAAAATAAGGTGAGATTTTTTTAATTTTCAAAGGTCTTCTGAATCTGTTGGACCCATCCAAACTCTCTAAAAAAGCCAAAAAGAAATAAAAAGCCCACCGGACTTGAACCCGCGTCGCGTGGGCAAAAGCGCAGCCCGCAACCACTATACCACGGTCGACCACAAGTGAACAAGGGCGTAGATGGCGTAGACAATACGCGGCCTTTTGTGAGTGGGTGGCGAGCCACGACGACATTCATGAAAAGTCGAAAATTTTCAAAAATTTCAAAAATCTCAAAATTTCCAGAATCTCCCCAAACCACCGTCGGATCGATGTCAAGTGGTGGTCATCTCCATTCTGAGTATGATTCTGGATTTCTATCTCAAGTAYAATCCCGACAAACATTGGGCTCATCTATTCTACGGAGCAAGTCCAATTTTGGAGATTTTGGTCATTTTTGGAATGTTGGCGAACTCGGTGTATGGCAACAAATTGGCTATGTTTGCTTGTGTGAGTTTAGTGGAGTAGGAACTCGCAGCTCGCTGCCGACCGACAATTTAAATTTTTGAATTCCCGCCAAATCTGGCGCCGAAGGATTTTTGGCCATAACTCGGCTCAAACTTAGTATAGAACGCTGAAACAAGCACCAAATAAATTTTACATATGCTGAAACCAAAAAAAAATAAAATTTCCGAATTTTCCAAAAAATTAGCAAAATCGAATTTTCCAGGTCCTCGACTTGGTCTCTGGCGTGTTCTGTCTTTTGACTCTTCCAGTCATTTCTGTTGCTGAAAATGCCACTGGTGTCCGCTTGCACCTTCCATACATCTCCACTTTCCATTCGCAGTTTTCTTTCCAAGTCTCAACTCCAGTGGACCTTTTCTATGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCTCAAAATTTCCAGAATCTC</pcr_primer_p1>
		<pcr_primer_p2>ACTAAACTCACACAAGCAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>AATCTCAAAATTTCCAGAATCTCCCCAAACCACCGTCGGATCGATGTCAAGTGGTGGTCATCTCCATTCTGAGTATGATTCTGGATTTCTATCTCAAGTACAATCCCGACAAACATTGGGCTCATCTATTCTACGGAGCAAGTCCAATTTTGGAGATTTTGGTCATTTTTGGAATGTTGGCGAACTCGGTGTATGGCAACAAATTGGCTATGTTTGCTTGTGTGAGTTTAGT</canonical_amplicon>
		<polymorphic_amplicon>AATCTCAAAATTTCCAGAATCTCCCCAAACCACCGTCGGATCGATGTCAAGTGGTGGTCATCTCCATTCTGAGTATGATTCTGGATTTCTATCTCAAGTAYAATCCCGACAAACATTGGGCTCATCTATTCTACGGAGCAAGTCCAATTTTGGAGATTTTGGTCATTTTTGGAATGTTGGCGAACTCGGTGTATGGCAACAAATTGGCTATGTTTGCTTGTGTGAGTTTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39438</snp_id>
        <super_contig>c013701045.Contig1</super_contig>
        <contig_pos>8220</contig_pos>
        <strand>+</strand>
        <context>TGGAGATTTT[G/T]GTCATTTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAACATTGGGCTCATCTATTCTACGGAGCAAGTCCAATTTTGGAGATTTT</left_flank>
        <right_flank>GTCATTTTTGGAATGTTGGCGAACTCGGTGTATGGCAACAAATTGGCTAT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCACAACACACAAACTTTTGAGTGGCAGCAGCTCCTTTGAGAAAAAAGAAGAAAAAGGATGACTTTTTGCGAAAATAAGGTGAGATTTTTTTAATTTTCAAAGGTCTTCTGAATCTGTTGGACCCATCCAAACTCTCTAAAAAAGCCAAAAAGAAATAAAAAGCCCACCGGACTTGAACCCGCGTCGCGTGGGCAAAAGCGCAGCCCGCAACCACTATACCACGGTCGACCACAAGTGAACAAGGGCGTAGATGGCGTAGACAATACGCGGCCTTTTGTGAGTGGGTGGCGAGCCACGACGACATTCATGAAAAGTCGAAAATTTTCAAAAATTTCAAAAATCTCAAAATTTCCAGAATCTCCCCAAACCACCGTCGGATCGATGTCAAGTGGTGGTCATCTCCATTCTGAGTATGATTCTGGATTTCTATCTCAAGTACAATCCCGACAAACATTGGGCTCATCTATTCTACGGAGCAAGTCCAATTTTGGAGATTTTGGTCATTTTTGGAATGTTGGCGAACTCGGTGTATGGCAACAAATTGGCTATGTTTGCTTGTGTGAGTTTAGTGGAGTAGGAACTCGCAGCTCGCTGCCGACCGACAATTTAAATTTTTGAATTCCCGCCAAATCTGGCGCCGAAGGATTTTTGGCCATAACTCGGCTCAAACTTAGTATAGAACGCTGAAACAAGCACCAAATAAATTTTACATATGCTGAAACCAAAAAAAAATAAAATTTCCGAATTTTCCAAAAAATTAGCAAAATCGAATTTTCCAGGTCCTCGACTTGGTCTCTGGCGTGTTCTGTCTTTTGACTCTTCCAGTCATTTCTGTTGCTGAAAATGCCACTGGTGTCCGCTTGCACCTTCCATACATCTCCACTTTCCATTCGCAGTTTTCTTTCCAAGTCTCAACTCCAGTGGACCTTTTCTATGTTGCCACTTTCCTTGGATTCGTCTCCACGATTCTGATTCTTCTCTTCCTGATTTGTGAGTTTT</canonical>
            <polymorphic>TCACAACACACAAACTTTTGAGTGGCAGCAGCTCCTTTGAGAAAAAAGAAGAAAAAGGATGACTTTTTGCGAAAATAAGGTGAGATTTTTTTAATTTTCAAAGGTCTTCTGAATCTGTTGGACCCATCCAAACTCTCTAAAAAAGCCAAAAAGAAATAAAAAGCCCACCGGACTTGAACCCGCGTCGCGTGGGCAAAAGCGCAGCCCGCAACCACTATACCACGGTCGACCACAAGTGAACAAGGGCGTAGATGGCGTAGACAATACGCGGCCTTTTGTGAGTGGGTGGCGAGCCACGACGACATTCATGAAAAGTCGAAAATTTTCAAAAATTTCAAAAATCTCAAAATTTCCAGAATCTCCCCAAACCACCGTCGGATCGATGTCAAGTGGTGGTCATCTCCATTCTGAGTATGATTCTGGATTTCTATCTCAAGTACAATCCCGACAAACATTGGGCTCATCTATTCTACGGAGCAAGTCCAATTTTGGAGATTTTKGTCATTTTTGGAATGTTGGCGAACTCGGTGTATGGCAACAAATTGGCTATGTTTGCTTGTGTGAGTTTAGTGGAGTAGGAACTCGCAGCTCGCTGCCGACCGACAATTTAAATTTTTGAATTCCCGCCAAATCTGGCGCCGAAGGATTTTTGGCCATAACTCGGCTCAAACTTAGTATAGAACGCTGAAACAAGCACCAAATAAATTTTACATATGCTGAAACCAAAAAAAAATAAAATTTCCGAATTTTCCAAAAAATTAGCAAAATCGAATTTTCCAGGTCCTCGACTTGGTCTCTGGCGTGTTCTGTCTTTTGACTCTTCCAGTCATTTCTGTTGCTGAAAATGCCACTGGTGTCCGCTTGCACCTTCCATACATCTCCACTTTCCATTCGCAGTTTTCTTTCCAAGTCTCAACTCCAGTGGACCTTTTCTATGTTGCCACTTTCCTTGGATTCGTCTCCACGATTCTGATTCTTCTCTTCCTGATTTGTGAGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCTCAAAATTTCCAGAATCTC</pcr_primer_p1>
		<pcr_primer_p2>ACTAAACTCACACAAGCAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>AATCTCAAAATTTCCAGAATCTCCCCAAACCACCGTCGGATCGATGTCAAGTGGTGGTCATCTCCATTCTGAGTATGATTCTGGATTTCTATCTCAAGTACAATCCCGACAAACATTGGGCTCATCTATTCTACGGAGCAAGTCCAATTTTGGAGATTTTGGTCATTTTTGGAATGTTGGCGAACTCGGTGTATGGCAACAAATTGGCTATGTTTGCTTGTGTGAGTTTAGT</canonical_amplicon>
		<polymorphic_amplicon>AATCTCAAAATTTCCAGAATCTCCCCAAACCACCGTCGGATCGATGTCAAGTGGTGGTCATCTCCATTCTGAGTATGATTCTGGATTTCTATCTCAAGTACAATCCCGACAAACATTGGGCTCATCTATTCTACGGAGCAAGTCCAATTTTGGAGATTTTKGTCATTTTTGGAATGTTGGCGAACTCGGTGTATGGCAACAAATTGGCTATGTTTGCTTGTGTGAGTTTAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39439</snp_id>
        <super_contig>c013701045.Contig1</super_contig>
        <contig_pos>8294</contig_pos>
        <strand>+</strand>
        <context>AGTTTAGTGG[A/G]GTAGGAACTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTCGGTGTATGGCAACAAATTGGCTATGTTTGCTTGTGTGAGTTTAGTGG</left_flank>
        <right_flank>GTAGGAACTCGCAGCTCGCTGCCGACCGACAATTTAAATTTTTGAATTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATAAGGTGAGATTTTTTTAATTTTCAAAGGTCTTCTGAATCTGTTGGACCCATCCAAACTCTCTAAAAAAGCCAAAAAGAAATAAAAAGCCCACCGGACTTGAACCCGCGTCGCGTGGGCAAAAGCGCAGCCCGCAACCACTATACCACGGTCGACCACAAGTGAACAAGGGCGTAGATGGCGTAGACAATACGCGGCCTTTTGTGAGTGGGTGGCGAGCCACGACGACATTCATGAAAAGTCGAAAATTTTCAAAAATTTCAAAAATCTCAAAATTTCCAGAATCTCCCCAAACCACCGTCGGATCGATGTCAAGTGGTGGTCATCTCCATTCTGAGTATGATTCTGGATTTCTATCTCAAGTACAATCCCGACAAACATTGGGCTCATCTATTCTACGGAGCAAGTCCAATTTTGGAGATTTTGGTCATTTTTGGAATGTTGGCGAACTCGGTGTATGGCAACAAATTGGCTATGTTTGCTTGTGTGAGTTTAGTGGAGTAGGAACTCGCAGCTCGCTGCCGACCGACAATTTAAATTTTTGAATTCCCGCCAAATCTGGCGCCGAAGGATTTTTGGCCATAACTCGGCTCAAACTTAGTATAGAACGCTGAAACAAGCACCAAATAAATTTTACATATGCTGAAACCAAAAAAAAATAAAATTTCCGAATTTTCCAAAAAATTAGCAAAATCGAATTTTCCAGGTCCTCGACTTGGTCTCTGGCGTGTTCTGTCTTTTGACTCTTCCAGTCATTTCTGTTGCTGAAAATGCCACTGGTGTCCGCTTGCACCTTCCATACATCTCCACTTTCCATTCGCAGTTTTCTTTCCAAGTCTCAACTCCAGTGGACCTTTTCTATGTTGCCACTTTCCTTGGATTCGTCTCCACGATTCTGATTCTTCTCTTCCTGATTTGTGAGTTTTGAGGGAATCGGGGTTTTAAACGTTTTTAGACTTCAGGATTTTGACATTTGAGAAATTTTGAGCCAAAATTCACT</canonical>
            <polymorphic>ATAAGGTGAGATTTTTTTAATTTTCAAAGGTCTTCTGAATCTGTTGGACCCATCCAAACTCTCTAAAAAAGCCAAAAAGAAATAAAAAGCCCACCGGACTTGAACCCGCGTCGCGTGGGCAAAAGCGCAGCCCGCAACCACTATACCACGGTCGACCACAAGTGAACAAGGGCGTAGATGGCGTAGACAATACGCGGCCTTTTGTGAGTGGGTGGCGAGCCACGACGACATTCATGAAAAGTCGAAAATTTTCAAAAATTTCAAAAATCTCAAAATTTCCAGAATCTCCCCAAACCACCGTCGGATCGATGTCAAGTGGTGGTCATCTCCATTCTGAGTATGATTCTGGATTTCTATCTCAAGTACAATCCCGACAAACATTGGGCTCATCTATTCTACGGAGCAAGTCCAATTTTGGAGATTTTGGTCATTTTTGGAATGTTGGCGAACTCGGTGTATGGCAACAAATTGGCTATGTTTGCTTGTGTGAGTTTAGTGGRGTAGGAACTCGCAGCTCGCTGCCGACCGACAATTTAAATTTTTGAATTCCCGCCAAATCTGGCGCCGAAGGATTTTTGGCCATAACTCGGCTCAAACTTAGTATAGAACGCTGAAACAAGCACCAAATAAATTTTACATATGCTGAAACCAAAAAAAAATAAAATTTCCGAATTTTCCAAAAAATTAGCAAAATCGAATTTTCCAGGTCCTCGACTTGGTCTCTGGCGTGTTCTGTCTTTTGACTCTTCCAGTCATTTCTGTTGCTGAAAATGCCACTGGTGTCCGCTTGCACCTTCCATACATCTCCACTTTCCATTCGCAGTTTTCTTTCCAAGTCTCAACTCCAGTGGACCTTTTCTATGTTGCCACTTTCCTTGGATTCGTCTCCACGATTCTGATTCTTCTCTTCCTGATTTGTGAGTTTTGAGGGAATCGGGGTTTTAAACGTTTTTAGACTTCAGGATTTTGACATTTGAGAAATTTTGAGCCAAAATTCACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATCTATTCTACGGAGCAAGT</pcr_primer_p1>
		<pcr_primer_p2>TAAAATTTATTTGGTGCTTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCATCTATTCTACGGAGCAAGTCCAATTTTGGAGATTTTGGTCATTTTTGGAATGTTGGCGAACTCGGTGTATGGCAACAAATTGGCTATGTTTGCTTGTGTGAGTTTAGTGGAGTAGGAACTCGCAGCTCGCTGCCGACCGACAATTTAAATTTTTGAATTCCCGCCAAATCTGGCGCCGAAGGATTTTTGGCCATAACTCGGCTCAAACTTAGTATAGAACGCTGAAACAAGCACCAAATAAATTTTA</canonical_amplicon>
		<polymorphic_amplicon>TCATCTATTCTACGGAGCAAGTCCAATTTTGGAGATTTTGGTCATTTTTGGAATGTTGGCGAACTCGGTGTATGGCAACAAATTGGCTATGTTTGCTTGTGTGAGTTTAGTGGRGTAGGAACTCGCAGCTCGCTGCCGACCGACAATTTAAATTTTTGAATTCCCGCCAAATCTGGCGCCGAAGGATTTTTGGCCATAACTCGGCTCAAACTTAGTATAGAACGCTGAAACAAGCACCAAATAAATTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39440</snp_id>
        <super_contig>c013701045.Contig1</super_contig>
        <contig_pos>8357</contig_pos>
        <strand>+</strand>
        <context>CCAAATCTGG[C/T]GCCRAAGGAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCTCGCTGCCGACCGACAATTTAAATTTTTGAATTCCCGCCAAATCTGG</left_flank>
        <right_flank>GCCGAAGGATTTTTGGCCATAACTCGGCTCAAACTTAGTATAGAACGCTG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAAAAAGCCAAAAAGAAATAAAAAGCCCACCGGACTTGAACCCGCGTCGCGTGGGCAAAAGCGCAGCCCGCAACCACTATACCACGGTCGACCACAAGTGAACAAGGGCGTAGATGGCGTAGACAATACGCGGCCTTTTGTGAGTGGGTGGCGAGCCACGACGACATTCATGAAAAGTCGAAAATTTTCAAAAATTTCAAAAATCTCAAAATTTCCAGAATCTCCCCAAACCACCGTCGGATCGATGTCAAGTGGTGGTCATCTCCATTCTGAGTATGATTCTGGATTTCTATCTCAAGTACAATCCCGACAAACATTGGGCTCATCTATTCTACGGAGCAAGTCCAATTTTGGAGATTTTGGTCATTTTTGGAATGTTGGCGAACTCGGTGTATGGCAACAAATTGGCTATGTTTGCTTGTGTGAGTTTAGTGGAGTAGGAACTCGCAGCTCGCTGCCGACCGACAATTTAAATTTTTGAATTCCCGCCAAATCTGGCGCCGAAGGATTTTTGGCCATAACTCGGCTCAAACTTAGTATAGAACGCTGAAACAAGCACCAAATAAATTTTACATATGCTGAAACCAAAAAAAAATAAAATTTCCGAATTTTCCAAAAAATTAGCAAAATCGAATTTTCCAGGTCCTCGACTTGGTCTCTGGCGTGTTCTGTCTTTTGACTCTTCCAGTCATTTCTGTTGCTGAAAATGCCACTGGTGTCCGCTTGCACCTTCCATACATCTCCACTTTCCATTCGCAGTTTTCTTTCCAAGTCTCAACTCCAGTGGACCTTTTCTATGTTGCCACTTTCCTTGGATTCGTCTCCACGATTCTGATTCTTCTCTTCCTGATTTGTGAGTTTTGAGGGAATCGGGGTTTTAAACGTTTTTAGACTTCAGGATTTTGACATTTGAGAAATTTTGAGCCAAAATTCACTAATCTCGGTGAAAAACTAGTTGAGTTACAGGCGGTTACCGTAGACCTTGTAAAAAAGCCTATG</canonical>
            <polymorphic>TAAAAAAGCCAAAAAGAAATAAAAAGCCCACCGGACTTGAACCCGCGTCGCGTGGGCAAAAGCGCAGCCCGCAACCACTATACCACGGTCGACCACAAGTGAACAAGGGCGTAGATGGCGTAGACAATACGCGGCCTTTTGTGAGTGGGTGGCGAGCCACGACGACATTCATGAAAAGTCGAAAATTTTCAAAAATTTCAAAAATCTCAAAATTTCCAGAATCTCCCCAAACCACCGTCGGATCGATGTCAAGTGGTGGTCATCTCCATTCTGAGTATGATTCTGGATTTCTATCTCAAGTACAATCCCGACAAACATTGGGCTCATCTATTCTACGGAGCAAGTCCAATTTTGGAGATTTTGGTCATTTTTGGAATGTTGGCGAACTCGGTGTATGGCAACAAATTGGCTATGTTTGCTTGTGTGAGTTTAGTGGAGTAGGAACTCGCAGCTCGCTGCCGACCGACAATTTAAATTTTTGAATTCCCGCCAAATCTGGYGCCGAAGGATTTTTGGCCATAACTCGGCTCAAACTTAGTATAGAACGCTGAAACAAGCACCAAATAAATTTTACATATGCTGAAACCAAAAAAAAATAAAATTTCCGAATTTTCCAAAAAATTAGCAAAATCGAATTTTCCAGGTCCTCGACTTGGTCTCTGGCGTGTTCTGTCTTTTGACTCTTCCAGTCATTTCTGTTGCTGAAAATGCCACTGGTGTCCGCTTGCACCTTCCATACATCTCCACTTTCCATTCGCAGTTTTCTTTCCAAGTCTCAACTCCAGTGGACCTTTTCTATGTTGCCACTTTCCTTGGATTCGTCTCCACGATTCTGATTCTTCTCTTCCTGATTTGTGAGTTTTGAGGGAATCGGGGTTTTAAACGTTTTTAGACTTCAGGATTTTGACATTTGAGAAATTTTGAGCCAAAATTCACTAATCTCGGTGAAAAACTAGTTGAGTTACAGGCGGTTACCGTAGACCTTGTAAAAAAGCCTATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGYRCC</site>
                <isoschizomers>
                    <enzyme>AccB1I</enzyme>
                    <enzyme>BanI</enzyme>
                    <enzyme>BshNI</enzyme>
                    <enzyme>BspT107I</enzyme>
                    <enzyme>HgiCI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>499 437 64</canonical_bands>
                <polymorphic_bands>936 64</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCGCC</site>
                <isoschizomers>
                    <enzyme>BbeI</enzyme>
                    <enzyme>EgeI</enzyme>
                    <enzyme>EheI</enzyme>
                    <enzyme>KasI</enzyme>
                    <enzyme>Mly113I</enzyme>
                    <enzyme>NarI</enzyme>
                    <enzyme>SfoI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCGCY</site>
                <isoschizomers>
                    <enzyme>Bsp143II</enzyme>
                    <enzyme>BstH2I</enzyme>
                    <enzyme>HaeII</enzyme>
                    <enzyme>LpnI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCATCTATTCTACGGAGCAAGT</pcr_primer_p1>
		<pcr_primer_p2>TAAAATTTATTTGGTGCTTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCATCTATTCTACGGAGCAAGTCCAATTTTGGAGATTTTGGTCATTTTTGGAATGTTGGCGAACTCGGTGTATGGCAACAAATTGGCTATGTTTGCTTGTGTGAGTTTAGTGGAGTAGGAACTCGCAGCTCGCTGCCGACCGACAATTTAAATTTTTGAATTCCCGCCAAATCTGGCGCCGAAGGATTTTTGGCCATAACTCGGCTCAAACTTAGTATAGAACGCTGAAACAAGCACCAAATAAATTTTA</canonical_amplicon>
		<polymorphic_amplicon>TCATCTATTCTACGGAGCAAGTCCAATTTTGGAGATTTTGGTCATTTTTGGAATGTTGGCGAACTCGGTGTATGGCAACAAATTGGCTATGTTTGCTTGTGTGAGTTTAGTGGAGTAGGAACTCGCAGCTCGCTGCCGACCGACAATTTAAATTTTTGAATTCCCGCCAAATCTGGYGCCGAAGGATTTTTGGCCATAACTCGGCTCAAACTTAGTATAGAACGCTGAAACAAGCACCAAATAAATTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39441</snp_id>
        <super_contig>c013701045.Contig1</super_contig>
        <contig_pos>8361</contig_pos>
        <strand>+</strand>
        <context>ATCTGGYGCC[A/G]AAGGATTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCTGCCGACCGACAATTTAAATTTTTGAATTCCCGCCAAATCTGGCGCC</left_flank>
        <right_flank>AAGGATTTTTGGCCATAACTCGGCTCAAACTTAGTATAGAACGCTGAAAC</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGCCAAAAAGAAATAAAAAGCCCACCGGACTTGAACCCGCGTCGCGTGGGCAAAAGCGCAGCCCGCAACCACTATACCACGGTCGACCACAAGTGAACAAGGGCGTAGATGGCGTAGACAATACGCGGCCTTTTGTGAGTGGGTGGCGAGCCACGACGACATTCATGAAAAGTCGAAAATTTTCAAAAATTTCAAAAATCTCAAAATTTCCAGAATCTCCCCAAACCACCGTCGGATCGATGTCAAGTGGTGGTCATCTCCATTCTGAGTATGATTCTGGATTTCTATCTCAAGTACAATCCCGACAAACATTGGGCTCATCTATTCTACGGAGCAAGTCCAATTTTGGAGATTTTGGTCATTTTTGGAATGTTGGCGAACTCGGTGTATGGCAACAAATTGGCTATGTTTGCTTGTGTGAGTTTAGTGGAGTAGGAACTCGCAGCTCGCTGCCGACCGACAATTTAAATTTTTGAATTCCCGCCAAATCTGGCGCCGAAGGATTTTTGGCCATAACTCGGCTCAAACTTAGTATAGAACGCTGAAACAAGCACCAAATAAATTTTACATATGCTGAAACCAAAAAAAAATAAAATTTCCGAATTTTCCAAAAAATTAGCAAAATCGAATTTTCCAGGTCCTCGACTTGGTCTCTGGCGTGTTCTGTCTTTTGACTCTTCCAGTCATTTCTGTTGCTGAAAATGCCACTGGTGTCCGCTTGCACCTTCCATACATCTCCACTTTCCATTCGCAGTTTTCTTTCCAAGTCTCAACTCCAGTGGACCTTTTCTATGTTGCCACTTTCCTTGGATTCGTCTCCACGATTCTGATTCTTCTCTTCCTGATTTGTGAGTTTTGAGGGAATCGGGGTTTTAAACGTTTTTAGACTTCAGGATTTTGACATTTGAGAAATTTTGAGCCAAAATTCACTAATCTCGGTGAAAAACTAGTTGAGTTACAGGCGGTTACCGTAGACCTTGTAAAAAAGCCTATGCCTG</canonical>
            <polymorphic>AAAGCCAAAAAGAAATAAAAAGCCCACCGGACTTGAACCCGCGTCGCGTGGGCAAAAGCGCAGCCCGCAACCACTATACCACGGTCGACCACAAGTGAACAAGGGCGTAGATGGCGTAGACAATACGCGGCCTTTTGTGAGTGGGTGGCGAGCCACGACGACATTCATGAAAAGTCGAAAATTTTCAAAAATTTCAAAAATCTCAAAATTTCCAGAATCTCCCCAAACCACCGTCGGATCGATGTCAAGTGGTGGTCATCTCCATTCTGAGTATGATTCTGGATTTCTATCTCAAGTACAATCCCGACAAACATTGGGCTCATCTATTCTACGGAGCAAGTCCAATTTTGGAGATTTTGGTCATTTTTGGAATGTTGGCGAACTCGGTGTATGGCAACAAATTGGCTATGTTTGCTTGTGTGAGTTTAGTGGAGTAGGAACTCGCAGCTCGCTGCCGACCGACAATTTAAATTTTTGAATTCCCGCCAAATCTGGCGCCRAAGGATTTTTGGCCATAACTCGGCTCAAACTTAGTATAGAACGCTGAAACAAGCACCAAATAAATTTTACATATGCTGAAACCAAAAAAAAATAAAATTTCCGAATTTTCCAAAAAATTAGCAAAATCGAATTTTCCAGGTCCTCGACTTGGTCTCTGGCGTGTTCTGTCTTTTGACTCTTCCAGTCATTTCTGTTGCTGAAAATGCCACTGGTGTCCGCTTGCACCTTCCATACATCTCCACTTTCCATTCGCAGTTTTCTTTCCAAGTCTCAACTCCAGTGGACCTTTTCTATGTTGCCACTTTCCTTGGATTCGTCTCCACGATTCTGATTCTTCTCTTCCTGATTTGTGAGTTTTGAGGGAATCGGGGTTTTAAACGTTTTTAGACTTCAGGATTTTGACATTTGAGAAATTTTGAGCCAAAATTCACTAATCTCGGTGAAAAACTAGTTGAGTTACAGGCGGTTACCGTAGACCTTGTAAAAAAGCCTATGCCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCATCTATTCTACGGAGCAAGT</pcr_primer_p1>
		<pcr_primer_p2>TAAAATTTATTTGGTGCTTGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCATCTATTCTACGGAGCAAGTCCAATTTTGGAGATTTTGGTCATTTTTGGAATGTTGGCGAACTCGGTGTATGGCAACAAATTGGCTATGTTTGCTTGTGTGAGTTTAGTGGAGTAGGAACTCGCAGCTCGCTGCCGACCGACAATTTAAATTTTTGAATTCCCGCCAAATCTGGCGCCGAAGGATTTTTGGCCATAACTCGGCTCAAACTTAGTATAGAACGCTGAAACAAGCACCAAATAAATTTTA</canonical_amplicon>
		<polymorphic_amplicon>TCATCTATTCTACGGAGCAAGTCCAATTTTGGAGATTTTGGTCATTTTTGGAATGTTGGCGAACTCGGTGTATGGCAACAAATTGGCTATGTTTGCTTGTGTGAGTTTAGTGGAGTAGGAACTCGCAGCTCGCTGCCGACCGACAATTTAAATTTTTGAATTCCCGCCAAATCTGGCGCCRAAGGATTTTTGGCCATAACTCGGCTCAAACTTAGTATAGAACGCTGAAACAAGCACCAAATAAATTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39442</snp_id>
        <super_contig>c013701045.Contig1</super_contig>
        <contig_pos>8396</contig_pos>
        <strand>+</strand>
        <context>TCAAACTTAG[C/T]ATAGAACGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCCAAATCTGGCGCCGAAGGATTTTTGGCCATAACTCGGCTCAAACTTAG</left_flank>
        <right_flank>ATAGAACGCTGAAACAAGCACCAAATAAATTTTACATATGCTGAAACCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACCCGCGTCGCGTGGGCAAAAGCGCAGCCCGCAACCACTATACCACGGTCGACCACAAGTGAACAAGGGCGTAGATGGCGTAGACAATACGCGGCCTTTTGTGAGTGGGTGGCGAGCCACGACGACATTCATGAAAAGTCGAAAATTTTCAAAAATTTCAAAAATCTCAAAATTTCCAGAATCTCCCCAAACCACCGTCGGATCGATGTCAAGTGGTGGTCATCTCCATTCTGAGTATGATTCTGGATTTCTATCTCAAGTACAATCCCGACAAACATTGGGCTCATCTATTCTACGGAGCAAGTCCAATTTTGGAGATTTTGGTCATTTTTGGAATGTTGGCGAACTCGGTGTATGGCAACAAATTGGCTATGTTTGCTTGTGTGAGTTTAGTGGAGTAGGAACTCGCAGCTCGCTGCCGACCGACAATTTAAATTTTTGAATTCCCGCCAAATCTGGCGCCGAAGGATTTTTGGCCATAACTCGGCTCAAACTTAGTATAGAACGCTGAAACAAGCACCAAATAAATTTTACATATGCTGAAACCAAAAAAAAATAAAATTTCCGAATTTTCCAAAAAATTAGCAAAATCGAATTTTCCAGGTCCTCGACTTGGTCTCTGGCGTGTTCTGTCTTTTGACTCTTCCAGTCATTTCTGTTGCTGAAAATGCCACTGGTGTCCGCTTGCACCTTCCATACATCTCCACTTTCCATTCGCAGTTTTCTTTCCAAGTCTCAACTCCAGTGGACCTTTTCTATGTTGCCACTTTCCTTGGATTCGTCTCCACGATTCTGATTCTTCTCTTCCTGATTTGTGAGTTTTGAGGGAATCGGGGTTTTAAACGTTTTTAGACTTCAGGATTTTGACATTTGAGAAATTTTGAGCCAAAATTCACTAATCTCGGTGAAAAACTAGTTGAGTTACAGGCGGTTACCGTAGACCTTGTAAAAAAGCCTATGCCTGGTTTGAGTCAATTTATCTCGATACCTGTAAAAGAT</canonical>
            <polymorphic>AACCCGCGTCGCGTGGGCAAAAGCGCAGCCCGCAACCACTATACCACGGTCGACCACAAGTGAACAAGGGCGTAGATGGCGTAGACAATACGCGGCCTTTTGTGAGTGGGTGGCGAGCCACGACGACATTCATGAAAAGTCGAAAATTTTCAAAAATTTCAAAAATCTCAAAATTTCCAGAATCTCCCCAAACCACCGTCGGATCGATGTCAAGTGGTGGTCATCTCCATTCTGAGTATGATTCTGGATTTCTATCTCAAGTACAATCCCGACAAACATTGGGCTCATCTATTCTACGGAGCAAGTCCAATTTTGGAGATTTTGGTCATTTTTGGAATGTTGGCGAACTCGGTGTATGGCAACAAATTGGCTATGTTTGCTTGTGTGAGTTTAGTGGAGTAGGAACTCGCAGCTCGCTGCCGACCGACAATTTAAATTTTTGAATTCCCGCCAAATCTGGCGCCGAAGGATTTTTGGCCATAACTCGGCTCAAACTTAGYATAGAACGCTGAAACAAGCACCAAATAAATTTTACATATGCTGAAACCAAAAAAAAATAAAATTTCCGAATTTTCCAAAAAATTAGCAAAATCGAATTTTCCAGGTCCTCGACTTGGTCTCTGGCGTGTTCTGTCTTTTGACTCTTCCAGTCATTTCTGTTGCTGAAAATGCCACTGGTGTCCGCTTGCACCTTCCATACATCTCCACTTTCCATTCGCAGTTTTCTTTCCAAGTCTCAACTCCAGTGGACCTTTTCTATGTTGCCACTTTCCTTGGATTCGTCTCCACGATTCTGATTCTTCTCTTCCTGATTTGTGAGTTTTGAGGGAATCGGGGTTTTAAACGTTTTTAGACTTCAGGATTTTGACATTTGAGAAATTTTGAGCCAAAATTCACTAATCTCGGTGAAAAACTAGTTGAGTTACAGGCGGTTACCGTAGACCTTGTAAAAAAGCCTATGCCTGGTTTGAGTCAATTTATCTCGATACCTGTAAAAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGGCAACAAATTGGCTAT</pcr_primer_p1>
		<pcr_primer_p2>GGAAAATTCGATTTTGCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TATGGCAACAAATTGGCTATGTTTGCTTGTGTGAGTTTAGTGGAGTAGGAACTCGCAGCTCGCTGCCGACCGACAATTTAAATTTTTGAATTCCCGCCAAATCTGGCGCCGAAGGATTTTTGGCCATAACTCGGCTCAAACTTAGTATAGAACGCTGAAACAAGCACCAAATAAATTTTACATATGCTGAAACCAAAAAAAAATAAAATTTCCGAATTTTCCAAAAAATTAGCAAAATCGAATTTTCC</canonical_amplicon>
		<polymorphic_amplicon>TATGGCAACAAATTGGCTATGTTTGCTTGTGTGAGTTTAGTGGAGTAGGAACTCGCAGCTCGCTGCCGACCGACAATTTAAATTTTTGAATTCCCGCCAAATCTGGCGCCGAAGGATTTTTGGCCATAACTCGGCTCAAACTTAGYATAGAACGCTGAAACAAGCACCAAATAAATTTTACATATGCTGAAACCAAAAAAAAATAAAATTTCCGAATTTTCCAAAAAATTAGCAAAATCGAATTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39443</snp_id>
        <super_contig>c013701045.Contig1</super_contig>
        <contig_pos>8443</contig_pos>
        <strand></strand>
        <context>TATGCTGAAA[C/T]CAAAAAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGTATAGAACGCTGAAACAAGCACCAAATAAATTTTACATATGCTGAAA</left_flank>
        <right_flank>CAAAAAAAAATAAAATTTCCGAATTTTCCAAAAAATTAGCAAAATCGAAT</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGTCGACCACAAGTGAACAAGGGCGTAGATGGCGTAGACAATACGCGGCCTTTTGTGAGTGGGTGGCGAGCCACGACGACATTCATGAAAAGTCGAAAATTTTCAAAAATTTCAAAAATCTCAAAATTTCCAGAATCTCCCCAAACCACCGTCGGATCGATGTCAAGTGGTGGTCATCTCCATTCTGAGTATGATTCTGGATTTCTATCTCAAGTACAATCCCGACAAACATTGGGCTCATCTATTCTACGGAGCAAGTCCAATTTTGGAGATTTTGGTCATTTTTGGAATGTTGGCGAACTCGGTGTATGGCAACAAATTGGCTATGTTTGCTTGTGTGAGTTTAGTGGAGTAGGAACTCGCAGCTCGCTGCCGACCGACAATTTAAATTTTTGAATTCCCGCCAAATCTGGCGCCGAAGGATTTTTGGCCATAACTCGGCTCAAACTTAGTATAGAACGCTGAAACAAGCACCAAATAAATTTTACATATGCTGAAACCAAAAAAAAATAAAATTTCCGAATTTTCCAAAAAATTAGCAAAATCGAATTTTCCAGGTCCTCGACTTGGTCTCTGGCGTGTTCTGTCTTTTGACTCTTCCAGTCATTTCTGTTGCTGAAAATGCCACTGGTGTCCGCTTGCACCTTCCATACATCTCCACTTTCCATTCGCAGTTTTCTTTCCAAGTCTCAACTCCAGTGGACCTTTTCTATGTTGCCACTTTCCTTGGATTCGTCTCCACGATTCTGATTCTTCTCTTCCTGATTTGTGAGTTTTGAGGGAATCGGGGTTTTAAACGTTTTTAGACTTCAGGATTTTGACATTTGAGAAATTTTGAGCCAAAATTCACTAATCTCGGTGAAAAACTAGTTGAGTTACAGGCGGTTACCGTAGACCTTGTAAAAAAGCCTATGCCTGGTTTGAGTCAATTTATCTCGATACCTGTAAAAGATATCAAAAAGTTGTCAACTGATGAAATGTTACTAATATTGTGATAAAA</canonical>
            <polymorphic>GGTCGACCACAAGTGAACAAGGGCGTAGATGGCGTAGACAATACGCGGCCTTTTGTGAGTGGGTGGCGAGCCACGACGACATTCATGAAAAGTCGAAAATTTTCAAAAATTTCAAAAATCTCAAAATTTCCAGAATCTCCCCAAACCACCGTCGGATCGATGTCAAGTGGTGGTCATCTCCATTCTGAGTATGATTCTGGATTTCTATCTCAAGTACAATCCCGACAAACATTGGGCTCATCTATTCTACGGAGCAAGTCCAATTTTGGAGATTTTGGTCATTTTTGGAATGTTGGCGAACTCGGTGTATGGCAACAAATTGGCTATGTTTGCTTGTGTGAGTTTAGTGGAGTAGGAACTCGCAGCTCGCTGCCGACCGACAATTTAAATTTTTGAATTCCCGCCAAATCTGGCGCCGAAGGATTTTTGGCCATAACTCGGCTCAAACTTAGTATAGAACGCTGAAACAAGCACCAAATAAATTTTACATATGCTGAAAYCAAAAAAAAATAAAATTTCCGAATTTTCCAAAAAATTAGCAAAATCGAATTTTCCAGGTCCTCGACTTGGTCTCTGGCGTGTTCTGTCTTTTGACTCTTCCAGTCATTTCTGTTGCTGAAAATGCCACTGGTGTCCGCTTGCACCTTCCATACATCTCCACTTTCCATTCGCAGTTTTCTTTCCAAGTCTCAACTCCAGTGGACCTTTTCTATGTTGCCACTTTCCTTGGATTCGTCTCCACGATTCTGATTCTTCTCTTCCTGATTTGTGAGTTTTGAGGGAATCGGGGTTTTAAACGTTTTTAGACTTCAGGATTTTGACATTTGAGAAATTTTGAGCCAAAATTCACTAATCTCGGTGAAAAACTAGTTGAGTTACAGGCGGTTACCGTAGACCTTGTAAAAAAGCCTATGCCTGGTTTGAGTCAATTTATCTCGATACCTGTAAAAGATATCAAAAAGTTGTCAACTGATGAAATGTTACTAATATTGTGATAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATGGCAACAAATTGGCTAT</pcr_primer_p1>
		<pcr_primer_p2>GGAAAATTCGATTTTGCTAAT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TATGGCAACAAATTGGCTATGTTTGCTTGTGTGAGTTTAGTGGAGTAGGAACTCGCAGCTCGCTGCCGACCGACAATTTAAATTTTTGAATTCCCGCCAAATCTGGCGCCGAAGGATTTTTGGCCATAACTCGGCTCAAACTTAGTATAGAACGCTGAAACAAGCACCAAATAAATTTTACATATGCTGAAACCAAAAAAAAATAAAATTTCCGAATTTTCCAAAAAATTAGCAAAATCGAATTTTCC</canonical_amplicon>
		<polymorphic_amplicon>TATGGCAACAAATTGGCTATGTTTGCTTGTGTGAGTTTAGTGGAGTAGGAACTCGCAGCTCGCTGCCGACCGACAATTTAAATTTTTGAATTCCCGCCAAATCTGGCGCCGAAGGATTTTTGGCCATAACTCGGCTCAAACTTAGTATAGAACGCTGAAACAAGCACCAAATAAATTTTACATATGCTGAAAYCAAAAAAAAATAAAATTTCCGAATTTTCCAAAAAATTAGCAAAATCGAATTTTCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39444</snp_id>
        <super_contig>c013701045.Contig1</super_contig>
        <contig_pos>8722</contig_pos>
        <strand>+</strand>
        <context>GTGAGTTTTG[A/G]GGGAATCGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGATTCGTCTCCACGATTCTGATTCTTCTCTTCCTGATTTGTGAGTTTTG</left_flank>
        <right_flank>GGGAATCGGGGTTTTAAACGTTTTTAGACTTCAGGATTTTGACATTTGAG</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTTTTGGAATGTTGGCGAACTCGGTGTATGGCAACAAATTGGCTATGTTTGCTTGTGTGAGTTTAGTGGAGTAGGAACTCGCAGCTCGCTGCCGACCGACAATTTAAATTTTTGAATTCCCGCCAAATCTGGCGCCGAAGGATTTTTGGCCATAACTCGGCTCAAACTTAGTATAGAACGCTGAAACAAGCACCAAATAAATTTTACATATGCTGAAACCAAAAAAAAATAAAATTTCCGAATTTTCCAAAAAATTAGCAAAATCGAATTTTCCAGGTCCTCGACTTGGTCTCTGGCGTGTTCTGTCTTTTGACTCTTCCAGTCATTTCTGTTGCTGAAAATGCCACTGGTGTCCGCTTGCACCTTCCATACATCTCCACTTTCCATTCGCAGTTTTCTTTCCAAGTCTCAACTCCAGTGGACCTTTTCTATGTTGCCACTTTCCTTGGATTCGTCTCCACGATTCTGATTCTTCTCTTCCTGATTTGTGAGTTTTGAGGGAATCGGGGTTTTAAACGTTTTTAGACTTCAGGATTTTGACATTTGAGAAATTTTGAGCCAAAATTCACTAATCTCGGTGAAAAACTAGTTGAGTTACAGGCGGTTACCGTAGACCTTGTAAAAAAGCCTATGCCTGGTTTGAGTCAATTTATCTCGATACCTGTAAAAGATATCAAAAAGTTGTCAACTGATGAAATGTTACTAATATTGTGATAAAATTTTTATTAGTTAAAAACTTTTTGATATCTCTCATAGGAACCGAGGTGAATTACGTCAAACTTGACTGTGTGCCGATAGGTGCCGCTGCTAGGGATCTCCCACCCTCACAACTTTGAATCAATTTATCTCGGTTCCTGTGACAAATATCTAAAAGAAGTTTGATAACAAAATTTTTATCATACTATCAGTAATATTTTATCAGTTGAGCACTTTTTGATATCATTCACAGAAAACGAGATAAATGGGGATAAAGCTGGGCACCACCTCTAACAAAAATT</canonical>
            <polymorphic>CATTTTTGGAATGTTGGCGAACTCGGTGTATGGCAACAAATTGGCTATGTTTGCTTGTGTGAGTTTAGTGGAGTAGGAACTCGCAGCTCGCTGCCGACCGACAATTTAAATTTTTGAATTCCCGCCAAATCTGGCGCCGAAGGATTTTTGGCCATAACTCGGCTCAAACTTAGTATAGAACGCTGAAACAAGCACCAAATAAATTTTACATATGCTGAAACCAAAAAAAAATAAAATTTCCGAATTTTCCAAAAAATTAGCAAAATCGAATTTTCCAGGTCCTCGACTTGGTCTCTGGCGTGTTCTGTCTTTTGACTCTTCCAGTCATTTCTGTTGCTGAAAATGCCACTGGTGTCCGCTTGCACCTTCCATACATCTCCACTTTCCATTCGCAGTTTTCTTTCCAAGTCTCAACTCCAGTGGACCTTTTCTATGTTGCCACTTTCCTTGGATTCGTCTCCACGATTCTGATTCTTCTCTTCCTGATTTGTGAGTTTTGRGGGAATCGGGGTTTTAAACGTTTTTAGACTTCAGGATTTTGACATTTGAGAAATTTTGAGCCAAAATTCACTAATCTCGGTGAAAAACTAGTTGAGTTACAGGCGGTTACCGTAGACCTTGTAAAAAAGCCTATGCCTGGTTTGAGTCAATTTATCTCGATACCTGTAAAAGATATCAAAAAGTTGTCAACTGATGAAATGTTACTAATATTGTGATAAAATTTTTATTAGTTAAAAACTTTTTGATATCTCTCATAGGAACCGAGGTGAATTACGTCAAACTTGACTGTGTGCCGATAGGTGCCGCTGCTAGGGATCTCCCACCCTCACAACTTTGAATCAATTTATCTCGGTTCCTGTGACAAATATCTAAAAGAAGTTTGATAACAAAATTTTTATCATACTATCAGTAATATTTTATCAGTTGAGCACTTTTTGATATCATTCACAGAAAACGAGATAAATGGGGATAAAGCTGGGCACCACCTCTAACAAAAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTCCTTGGATTCGTCTC</pcr_primer_p1>
		<pcr_primer_p2>GACAATTTTTGTTAGAGGTGGT</pcr_primer_p2>
		<pcr_amplicon_size>563</pcr_amplicon_size>
		<canonical_amplicon>ACTTTCCTTGGATTCGTCTCCACGATTCTGATTCTTCTCTTCCTGATTTGTGAGTTTTGAGGGAATCGGGGTTTTAAACGT</canonical_amplicon>
		<polymorphic_amplicon>ACTTTCCTTGGATTCGTCTCCACGATTCTGATTCTTCTCTTCCTGATTTGTGAGTTTTGRGGGAATCGGGGTTTTAAACGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39445</snp_id>
        <super_contig>c013701045.Contig1</super_contig>
        <contig_pos>21301</contig_pos>
        <strand>+</strand>
        <context>CCTCCGAATG[A/T]CCTTTCTCAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGAAGAAGAAGAATCTTGTCATAAACCTCCGTTTCCTCTTCCTCCGAATG</left_flank>
        <right_flank>CCTTTCTCAGGTTTTCGAACGGCGAGAAGAGTTCGAGAAAAATGTGATCA</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCATAAATCCAGAAATTCAGAACTTCAAAAATTCAAATATTCCAAATTTTGGGAGATCGGGAAATTCGAAAGTCAATCCAGAACTTCTGGAATCTCCGAAATCTTCTGGAATCCCCCCCCCCCCCCCCCCCACACAAACTTCCCCTAATCCAATTAACCCATTCCATCTCCTCTATCTTCTTCACCTTCTCCTAATCATAAACTGCCAACCTTCACACCTGAATGCCACGTCATAATCCTTTTGTCCTTGTTCCTCCAAACGGCCACATCAAAGAAAAAAAGGAGAGAAGAAGAAGAAGAATCTTGTCATAAACCTCCGTTTCCTCTTCCTCCGAATGTCCTTTCTCAGGTTTTCGAACGGCGAGAAGAGTTCGAGAAAAATGTGATCAAGCGTGTCAATCTGTCTCGGAAGATCGACGGAAAGAGGCAATCCAATTATTATCCACACTTTTTAATTATTGCTGTAAAAAACCGTAAAACCTGGGTTTTAAAACTTTGAGCCTATTTATCTCGGTTTCTGGAAAAGATATCAGAAAGTTGCCAACTGATAGAAGATTGCTAATGTTATGATGAACATTTCATTAATTAGCAAAATTTTGACATCATTGACAGGAATGGAGATATGTACGGTCAAAGGAAGAGGACGGTCTCGTTGCAGCCGTTTTTCGGCCGTATCTGCACTTTGAGCTTGACTATCTTGGTTCTTGGAAAAGATATCAAAAATTCCTCAACTAATAAAATATTTATCATAATGTGCTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATTAAAAAGTGATCAACTAATAAAATGTCACTGATATTATGATAAACAC</canonical>
            <polymorphic>TTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCATAAATCCAGAAATTCAGAACTTCAAAAATTCAAATATTCCAAATTTTGGGAGATCGGGAAATTCGAAAGTCAATCCAGAACTTCTGGAATCTCCGAAATCTTCTGGAATCCCCCCCCCCCCCCCCCCCACACAAACTTCCCCTAATCCAATTAACCCATTCCATCTCCTCTATCTTCTTCACCTTCTCCTAATCATAAACTGCCAACCTTCACACCTGAATGCCACGTCATAATCCTTTTGTCCTTGTTCCTCCAAACGGCCACATCAAAGAAAAAAAGGAGAGAAGAAGAAGAAGAATCTTGTCATAAACCTCCGTTTCCTCTTCCTCCGAATGWCCTTTCTCAGGTTTTCGAACGGCGAGAAGAGTTCGAGAAAAATGTGATCAAGCGTGTCAATCTGTCTCGGAAGATCGACGGAAAGAGGCAATCCAATTATTATCCACACTTTTTAATTATTGCTGTAAAAAACCGTAAAACCTGGGTTTTAAAACTTTGAGCCTATTTATCTCGGTTTCTGGAAAAGATATCAGAAAGTTGCCAACTGATAGAAGATTGCTAATGTTATGATGAACATTTCATTAATTAGCAAAATTTTGACATCATTGACAGGAATGGAGATATGTACGGTCAAAGGAAGAGGACGGTCTCGTTGCAGCCGTTTTTCGGCCGTATCTGCACTTTGAGCTTGACTATCTTGGTTCTTGGAAAAGATATCAAAAATTCCTCAACTAATAAAATATTTATCATAATGTGCTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATTAAAAAGTGATCAACTAATAAAATGTCACTGATATTATGATAAACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAATCATAAACTGCCAACCTT</pcr_primer_p1>
		<pcr_primer_p2>ATAATAATTGGATTGCCTCTTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CTAATCATAAACTGCCAACCTTCACACCTGAATGCCACGTCATAATCCTTTTGTCCTTGTTCCTCCAAACGGCCACATCAAAGAAAAAAAGGAGAGAAGAAGAAGAAGAATCTTGTCATAAACCTCCGTTTCCTCTTCCTCCGAATGTCCTTTCTCAGGTTTTCGAACGGCGAGAAGAGTTCGAGAAAAATGTGATCAAGCGTGTCAATCTGTCTCGGAAGATCGACGGAAAGAGGCAATCCAATTATTAT</canonical_amplicon>
		<polymorphic_amplicon>CTAATCATAAACTGCCAACCTTCACACCTGAATGCCACGTCATAATCCTTTTGTCCTTGTTCCTCCAAACGGCCACATCAAAGAAAAAAAGGAGAGAAGAAGAAGAAGAATCTTGTCATAAACCTCCGTTTCCTCTTCCTCCGAATGWCCTTTCTCAGGTTTTCGAACGGCGAGAAGAGTTCGAGAAAAATGTGATCAAGCGTGTCAATCTGTCTCGGAAGATCGACGGAAAGAGGCAATCCAATTATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39446</snp_id>
        <super_contig>c013701045.Contig1</super_contig>
        <contig_pos>21479</contig_pos>
        <strand></strand>
        <context>tatctcggtt[T/C]ctggaaaaga</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAAACCGTAAAACCTGGGTTTTAAAACTTTGAGCCTATTTATCTCGGTT</left_flank>
        <right_flank>CTGGAAAAGATATCAGAAAGTTGCCAACTGATAGAAGATTGCTAATGTTA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAACTTCAAAAATTCAAATATTCCAAATTTTGGGAGATCGGGAAATTCGAAAGTCAATCCAGAACTTCTGGAATCTCCGAAATCTTCTGGAATCCCCCCCCCCCCCCCCCCCACACAAACTTCCCCTAATCCAATTAACCCATTCCATCTCCTCTATCTTCTTCACCTTCTCCTAATCATAAACTGCCAACCTTCACACCTGAATGCCACGTCATAATCCTTTTGTCCTTGTTCCTCCAAACGGCCACATCAAAGAAAAAAAGGAGAGAAGAAGAAGAAGAATCTTGTCATAAACCTCCGTTTCCTCTTCCTCCGAATGTCCTTTCTCAGGTTTTCGAACGGCGAGAAGAGTTCGAGAAAAATGTGATCAAGCGTGTCAATCTGTCTCGGAAGATCGACGGAAAGAGGCAATCCAATTATTATCCACACTTTTTAATTATTGCTGTAAAAAACCGTAAAACCTGGGTTTTAAAACTTTGAGCCTATTTATCTCGGTTTCTGGAAAAGATATCAGAAAGTTGCCAACTGATAGAAGATTGCTAATGTTATGATGAACATTTCATTAATTAGCAAAATTTTGACATCATTGACAGGAATGGAGATATGTACGGTCAAAGGAAGAGGACGGTCTCGTTGCAGCCGTTTTTCGGCCGTATCTGCACTTTGAGCTTGACTATCTTGGTTCTTGGAAAAGATATCAAAAATTCCTCAACTAATAAAATATTTATCATAATGTGCTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATTAAAAAGTGATCAACTAATAAAATGTCACTGATATTATGATAAACACTTTATCAGTTGTTAACTTTTTGATATCTTTTACAGGGACCGAAATAATTATAGTCAAAGTTTAGGGAAATTCTTTTACTGTTTCTAACAATACGTTTATGGCGTTTCGGAAGCATCTGGAAAACCTCTGAACATTTTTTAATTTAATACCTCACAATCTAAAAAACACCTAATTTTCA</canonical>
            <polymorphic>CAGAACTTCAAAAATTCAAATATTCCAAATTTTGGGAGATCGGGAAATTCGAAAGTCAATCCAGAACTTCTGGAATCTCCGAAATCTTCTGGAATCCCCCCCCCCCCCCCCCCCACACAAACTTCCCCTAATCCAATTAACCCATTCCATCTCCTCTATCTTCTTCACCTTCTCCTAATCATAAACTGCCAACCTTCACACCTGAATGCCACGTCATAATCCTTTTGTCCTTGTTCCTCCAAACGGCCACATCAAAGAAAAAAAGGAGAGAAGAAGAAGAAGAATCTTGTCATAAACCTCCGTTTCCTCTTCCTCCGAATGTCCTTTCTCAGGTTTTCGAACGGCGAGAAGAGTTCGAGAAAAATGTGATCAAGCGTGTCAATCTGTCTCGGAAGATCGACGGAAAGAGGCAATCCAATTATTATCCACACTTTTTAATTATTGCTGTAAAAAACCGTAAAACCTGGGTTTTAAAACTTTGAGCCTATTTATCTCGGTTYCTGGAAAAGATATCAGAAAGTTGCCAACTGATAGAAGATTGCTAATGTTATGATGAACATTTCATTAATTAGCAAAATTTTGACATCATTGACAGGAATGGAGATATGTACGGTCAAAGGAAGAGGACGGTCTCGTTGCAGCCGTTTTTCGGCCGTATCTGCACTTTGAGCTTGACTATCTTGGTTCTTGGAAAAGATATCAAAAATTCCTCAACTAATAAAATATTTATCATAATGTGCTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATTAAAAAGTGATCAACTAATAAAATGTCACTGATATTATGATAAACACTTTATCAGTTGTTAACTTTTTGATATCTTTTACAGGGACCGAAATAATTATAGTCAAAGTTTAGGGAAATTCTTTTACTGTTTCTAACAATACGTTTATGGCGTTTCGGAAGCATCTGGAAAACCTCTGAACATTTTTTAATTTAATACCTCACAATCTAAAAAACACCTAATTTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>437 267 145 62 41 20 19 9</canonical_bands>
                <polymorphic_bands>582 267 62 41 20 19 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACACTTTTTAATTATTGCTGT</pcr_primer_p1>
		<pcr_primer_p2>GCCATAAACGTATTGTTAGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>499</pcr_amplicon_size>
		<canonical_amplicon>CCACACTTTTTAATTATTGCTGTAAAAAACCGTAAAACCTGGGTTTTAAAACTTTGAGCCTATTTATCTCGGTTTCTGGAAAAGATATCAGAAAGTTGCCAACTGATAGAAGATTGCTAATGTTATGATGAACATTTCATTAATTAGCAAAATTTTGACATCATTGACAGGAATGGAGATATGTACGGTCAAAGGAAGAGGACGGTCTCGTTGCAGCCGTTTTTCGGCCGTATCTGCACTTTGAGCTTGACTATCTTGGTTCTTGGAAAAGATATCAAAAATTCCTCAACTAATAAAATATTTATCATAATGTGCTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATTAAAAAGTGATCAACTAATAAAATGTCACTGATATTATGATAAACACTTTATCAGTTGTTAACTTTTTGATATCTTTTACAGGGACCGAAATAATTATAGTCAAAGTTTAGGGAAATTCTTTTACTGTTTCTAACAATACGTTTATGGC</canonical_amplicon>
		<polymorphic_amplicon>CCACACTTTTTAATTATTGCTGTAAAAAACCGTAAAACCTGGGTTTTAAAACTTTGAGCCTATTTATCTCGGTTYCTGGAAAAGATATCAGAAAGTTGCCAACTGATAGAAGATTGCTAATGTTATGATGAACATTTCATTAATTAGCAAAATTTTGACATCATTGACAGGAATGGAGATATGTACGGTCAAAGGAAGAGGACGGTCTCGTTGCAGCCGTTTTTCGGCCGTATCTGCACTTTGAGCTTGACTATCTTGGTTCTTGGAAAAGATATCAAAAATTCCTCAACTAATAAAATATTTATCATAATGTGCTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATTAAAAAGTGATCAACTAATAAAATGTCACTGATATTATGATAAACACTTTATCAGTTGTTAACTTTTTGATATCTTTTACAGGGACCGAAATAATTATAGTCAAAGTTTAGGGAAATTCTTTTACTGTTTCTAACAATACGTTTATGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39447</snp_id>
        <super_contig>c013701045.Contig1</super_contig>
        <contig_pos>21513</contig_pos>
        <strand></strand>
        <context>ccaactgata[G/A]aagattgcta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CCTATTTATCTCGGTTTCTGGAAAAGATATCAGAAAGTTGCCAACTGATA</left_flank>
        <right_flank>AAGATTGCTAATGTTATGATGAACATTTCATTAATTAGCAAAATTTTGAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGAGATCGGGAAATTCGAAAGTCAATCCAGAACTTCTGGAATCTCCGAAATCTTCTGGAATCCCCCCCCCCCCCCCCCCCACACAAACTTCCCCTAATCCAATTAACCCATTCCATCTCCTCTATCTTCTTCACCTTCTCCTAATCATAAACTGCCAACCTTCACACCTGAATGCCACGTCATAATCCTTTTGTCCTTGTTCCTCCAAACGGCCACATCAAAGAAAAAAAGGAGAGAAGAAGAAGAAGAATCTTGTCATAAACCTCCGTTTCCTCTTCCTCCGAATGTCCTTTCTCAGGTTTTCGAACGGCGAGAAGAGTTCGAGAAAAATGTGATCAAGCGTGTCAATCTGTCTCGGAAGATCGACGGAAAGAGGCAATCCAATTATTATCCACACTTTTTAATTATTGCTGTAAAAAACCGTAAAACCTGGGTTTTAAAACTTTGAGCCTATTTATCTCGGTTTCTGGAAAAGATATCAGAAAGTTGCCAACTGATAGAAGATTGCTAATGTTATGATGAACATTTCATTAATTAGCAAAATTTTGACATCATTGACAGGAATGGAGATATGTACGGTCAAAGGAAGAGGACGGTCTCGTTGCAGCCGTTTTTCGGCCGTATCTGCACTTTGAGCTTGACTATCTTGGTTCTTGGAAAAGATATCAAAAATTCCTCAACTAATAAAATATTTATCATAATGTGCTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATTAAAAAGTGATCAACTAATAAAATGTCACTGATATTATGATAAACACTTTATCAGTTGTTAACTTTTTGATATCTTTTACAGGGACCGAAATAATTATAGTCAAAGTTTAGGGAAATTCTTTTACTGTTTCTAACAATACGTTTATGGCGTTTCGGAAGCATCTGGAAAACCTCTGAACATTTTTTAATTTAATACCTCACAATCTAAAAAACACCTAATTTTCATTTTCAGCTTTTCAAGTGTTTTTCTTACCATTTT</canonical>
            <polymorphic>GGAGATCGGGAAATTCGAAAGTCAATCCAGAACTTCTGGAATCTCCGAAATCTTCTGGAATCCCCCCCCCCCCCCCCCCCACACAAACTTCCCCTAATCCAATTAACCCATTCCATCTCCTCTATCTTCTTCACCTTCTCCTAATCATAAACTGCCAACCTTCACACCTGAATGCCACGTCATAATCCTTTTGTCCTTGTTCCTCCAAACGGCCACATCAAAGAAAAAAAGGAGAGAAGAAGAAGAAGAATCTTGTCATAAACCTCCGTTTCCTCTTCCTCCGAATGTCCTTTCTCAGGTTTTCGAACGGCGAGAAGAGTTCGAGAAAAATGTGATCAAGCGTGTCAATCTGTCTCGGAAGATCGACGGAAAGAGGCAATCCAATTATTATCCACACTTTTTAATTATTGCTGTAAAAAACCGTAAAACCTGGGTTTTAAAACTTTGAGCCTATTTATCTCGGTTTCTGGAAAAGATATCAGAAAGTTGCCAACTGATARAAGATTGCTAATGTTATGATGAACATTTCATTAATTAGCAAAATTTTGACATCATTGACAGGAATGGAGATATGTACGGTCAAAGGAAGAGGACGGTCTCGTTGCAGCCGTTTTTCGGCCGTATCTGCACTTTGAGCTTGACTATCTTGGTTCTTGGAAAAGATATCAAAAATTCCTCAACTAATAAAATATTTATCATAATGTGCTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATTAAAAAGTGATCAACTAATAAAATGTCACTGATATTATGATAAACACTTTATCAGTTGTTAACTTTTTGATATCTTTTACAGGGACCGAAATAATTATAGTCAAAGTTTAGGGAAATTCTTTTACTGTTTCTAACAATACGTTTATGGCGTTTCGGAAGCATCTGGAAAACCTCTGAACATTTTTTAATTTAATACCTCACAATCTAAAAAACACCTAATTTTCATTTTCAGCTTTTCAAGTGTTTTTCTTACCATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACACTTTTTAATTATTGCTGT</pcr_primer_p1>
		<pcr_primer_p2>GCCATAAACGTATTGTTAGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>499</pcr_amplicon_size>
		<canonical_amplicon>CCACACTTTTTAATTATTGCTGTAAAAAACCGTAAAACCTGGGTTTTAAAACTTTGAGCCTATTTATCTCGGTTTCTGGAAAAGATATCAGAAAGTTGCCAACTGATAGAAGATTGCTAATGTTATGATGAACATTTCATTAATTAGCAAAATTTTGACATCATTGACAGGAATGGAGATATGTACGGTCAAAGGAAGAGGACGGTCTCGTTGCAGCCGTTTTTCGGCCGTATCTGCACTTTGAGCTTGACTATCTTGGTTCTTGGAAAAGATATCAAAAATTCCTCAACTAATAAAATATTTATCATAATGTGCTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATTAAAAAGTGATCAACTAATAAAATGTCACTGATATTATGATAAACACTTTATCAGTTGTTAACTTTTTGATATCTTTTACAGGGACCGAAATAATTATAGTCAAAGTTTAGGGAAATTCTTTTACTGTTTCTAACAATACGTTTATGGC</canonical_amplicon>
		<polymorphic_amplicon>CCACACTTTTTAATTATTGCTGTAAAAAACCGTAAAACCTGGGTTTTAAAACTTTGAGCCTATTTATCTCGGTTTCTGGAAAAGATATCAGAAAGTTGCCAACTGATARAAGATTGCTAATGTTATGATGAACATTTCATTAATTAGCAAAATTTTGACATCATTGACAGGAATGGAGATATGTACGGTCAAAGGAAGAGGACGGTCTCGTTGCAGCCGTTTTTCGGCCGTATCTGCACTTTGAGCTTGACTATCTTGGTTCTTGGAAAAGATATCAAAAATTCCTCAACTAATAAAATATTTATCATAATGTGCTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATTAAAAAGTGATCAACTAATAAAATGTCACTGATATTATGATAAACACTTTATCAGTTGTTAACTTTTTGATATCTTTTACAGGGACCGAAATAATTATAGTCAAAGTTTAGGGAAATTCTTTTACTGTTTCTAACAATACGTTTATGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39448</snp_id>
        <super_contig>c013701045.Contig1</super_contig>
        <contig_pos>21542</contig_pos>
        <strand></strand>
        <context>atgaacattt[C/T]attaattagc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAGAAAGTTGCCAACTGATAGAAGATTGCTAATGTTATGATGAACATTT</left_flank>
        <right_flank>ATTAATTAGCAAAATTTTGACATCATTGACAGGAATGGAGATATGTACGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAACTTCTGGAATCTCCGAAATCTTCTGGAATCCCCCCCCCCCCCCCCCCCACACAAACTTCCCCTAATCCAATTAACCCATTCCATCTCCTCTATCTTCTTCACCTTCTCCTAATCATAAACTGCCAACCTTCACACCTGAATGCCACGTCATAATCCTTTTGTCCTTGTTCCTCCAAACGGCCACATCAAAGAAAAAAAGGAGAGAAGAAGAAGAAGAATCTTGTCATAAACCTCCGTTTCCTCTTCCTCCGAATGTCCTTTCTCAGGTTTTCGAACGGCGAGAAGAGTTCGAGAAAAATGTGATCAAGCGTGTCAATCTGTCTCGGAAGATCGACGGAAAGAGGCAATCCAATTATTATCCACACTTTTTAATTATTGCTGTAAAAAACCGTAAAACCTGGGTTTTAAAACTTTGAGCCTATTTATCTCGGTTTCTGGAAAAGATATCAGAAAGTTGCCAACTGATAGAAGATTGCTAATGTTATGATGAACATTTCATTAATTAGCAAAATTTTGACATCATTGACAGGAATGGAGATATGTACGGTCAAAGGAAGAGGACGGTCTCGTTGCAGCCGTTTTTCGGCCGTATCTGCACTTTGAGCTTGACTATCTTGGTTCTTGGAAAAGATATCAAAAATTCCTCAACTAATAAAATATTTATCATAATGTGCTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATTAAAAAGTGATCAACTAATAAAATGTCACTGATATTATGATAAACACTTTATCAGTTGTTAACTTTTTGATATCTTTTACAGGGACCGAAATAATTATAGTCAAAGTTTAGGGAAATTCTTTTACTGTTTCTAACAATACGTTTATGGCGTTTCGGAAGCATCTGGAAAACCTCTGAACATTTTTTAATTTAATACCTCACAATCTAAAAAACACCTAATTTTCATTTTCAGCTTTTCAAGTGTTTTTCTTACCATTTTTTTTACGTTTTCTCTCAAAAATATTCCCC</canonical>
            <polymorphic>GAACTTCTGGAATCTCCGAAATCTTCTGGAATCCCCCCCCCCCCCCCCCCCACACAAACTTCCCCTAATCCAATTAACCCATTCCATCTCCTCTATCTTCTTCACCTTCTCCTAATCATAAACTGCCAACCTTCACACCTGAATGCCACGTCATAATCCTTTTGTCCTTGTTCCTCCAAACGGCCACATCAAAGAAAAAAAGGAGAGAAGAAGAAGAAGAATCTTGTCATAAACCTCCGTTTCCTCTTCCTCCGAATGTCCTTTCTCAGGTTTTCGAACGGCGAGAAGAGTTCGAGAAAAATGTGATCAAGCGTGTCAATCTGTCTCGGAAGATCGACGGAAAGAGGCAATCCAATTATTATCCACACTTTTTAATTATTGCTGTAAAAAACCGTAAAACCTGGGTTTTAAAACTTTGAGCCTATTTATCTCGGTTTCTGGAAAAGATATCAGAAAGTTGCCAACTGATAGAAGATTGCTAATGTTATGATGAACATTTYATTAATTAGCAAAATTTTGACATCATTGACAGGAATGGAGATATGTACGGTCAAAGGAAGAGGACGGTCTCGTTGCAGCCGTTTTTCGGCCGTATCTGCACTTTGAGCTTGACTATCTTGGTTCTTGGAAAAGATATCAAAAATTCCTCAACTAATAAAATATTTATCATAATGTGCTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATTAAAAAGTGATCAACTAATAAAATGTCACTGATATTATGATAAACACTTTATCAGTTGTTAACTTTTTGATATCTTTTACAGGGACCGAAATAATTATAGTCAAAGTTTAGGGAAATTCTTTTACTGTTTCTAACAATACGTTTATGGCGTTTCGGAAGCATCTGGAAAACCTCTGAACATTTTTTAATTTAATACCTCACAATCTAAAAAACACCTAATTTTCATTTTCAGCTTTTCAAGTGTTTTTCTTACCATTTTTTTTACGTTTTCTCTCAAAAATATTCCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCACACTTTTTAATTATTGCTGT</pcr_primer_p1>
		<pcr_primer_p2>GCCATAAACGTATTGTTAGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>499</pcr_amplicon_size>
		<canonical_amplicon>CCACACTTTTTAATTATTGCTGTAAAAAACCGTAAAACCTGGGTTTTAAAACTTTGAGCCTATTTATCTCGGTTTCTGGAAAAGATATCAGAAAGTTGCCAACTGATAGAAGATTGCTAATGTTATGATGAACATTTCATTAATTAGCAAAATTTTGACATCATTGACAGGAATGGAGATATGTACGGTCAAAGGAAGAGGACGGTCTCGTTGCAGCCGTTTTTCGGCCGTATCTGCACTTTGAGCTTGACTATCTTGGTTCTTGGAAAAGATATCAAAAATTCCTCAACTAATAAAATATTTATCATAATGTGCTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATTAAAAAGTGATCAACTAATAAAATGTCACTGATATTATGATAAACACTTTATCAGTTGTTAACTTTTTGATATCTTTTACAGGGACCGAAATAATTATAGTCAAAGTTTAGGGAAATTCTTTTACTGTTTCTAACAATACGTTTATGGC</canonical_amplicon>
		<polymorphic_amplicon>CCACACTTTTTAATTATTGCTGTAAAAAACCGTAAAACCTGGGTTTTAAAACTTTGAGCCTATTTATCTCGGTTTCTGGAAAAGATATCAGAAAGTTGCCAACTGATAGAAGATTGCTAATGTTATGATGAACATTTYATTAATTAGCAAAATTTTGACATCATTGACAGGAATGGAGATATGTACGGTCAAAGGAAGAGGACGGTCTCGTTGCAGCCGTTTTTCGGCCGTATCTGCACTTTGAGCTTGACTATCTTGGTTCTTGGAAAAGATATCAAAAATTCCTCAACTAATAAAATATTTATCATAATGTGCTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATTAAAAAGTGATCAACTAATAAAATGTCACTGATATTATGATAAACACTTTATCAGTTGTTAACTTTTTGATATCTTTTACAGGGACCGAAATAATTATAGTCAAAGTTTAGGGAAATTCTTTTACTGTTTCTAACAATACGTTTATGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39449</snp_id>
        <super_contig>c013701045.Contig1</super_contig>
        <contig_pos>21589</contig_pos>
        <strand></strand>
        <context>ggagatatgt[A/T]cggtcaaagg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCATTAATTAGCAAAATTTTGACATCATTGACAGGAATGGAGATATGT</left_flank>
        <right_flank>CGGTCAAAGGAAGAGGACGGTCTCGTTGCAGCCGTTTTTCGGCCGTATCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCCCACACAAACTTCCCCTAATCCAATTAACCCATTCCATCTCCTCTATCTTCTTCACCTTCTCCTAATCATAAACTGCCAACCTTCACACCTGAATGCCACGTCATAATCCTTTTGTCCTTGTTCCTCCAAACGGCCACATCAAAGAAAAAAAGGAGAGAAGAAGAAGAAGAATCTTGTCATAAACCTCCGTTTCCTCTTCCTCCGAATGTCCTTTCTCAGGTTTTCGAACGGCGAGAAGAGTTCGAGAAAAATGTGATCAAGCGTGTCAATCTGTCTCGGAAGATCGACGGAAAGAGGCAATCCAATTATTATCCACACTTTTTAATTATTGCTGTAAAAAACCGTAAAACCTGGGTTTTAAAACTTTGAGCCTATTTATCTCGGTTTCTGGAAAAGATATCAGAAAGTTGCCAACTGATAGAAGATTGCTAATGTTATGATGAACATTTCATTAATTAGCAAAATTTTGACATCATTGACAGGAATGGAGATATGTACGGTCAAAGGAAGAGGACGGTCTCGTTGCAGCCGTTTTTCGGCCGTATCTGCACTTTGAGCTTGACTATCTTGGTTCTTGGAAAAGATATCAAAAATTCCTCAACTAATAAAATATTTATCATAATGTGCTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATTAAAAAGTGATCAACTAATAAAATGTCACTGATATTATGATAAACACTTTATCAGTTGTTAACTTTTTGATATCTTTTACAGGGACCGAAATAATTATAGTCAAAGTTTAGGGAAATTCTTTTACTGTTTCTAACAATACGTTTATGGCGTTTCGGAAGCATCTGGAAAACCTCTGAACATTTTTTAATTTAATACCTCACAATCTAAAAAACACCTAATTTTCATTTTCAGCTTTTCAAGTGTTTTTCTTACCATTTTTTTTACGTTTTCTCTCAAAAATATTCCCCTATCTCTTAAGACATTAAGAGATCAAAAAACCTGGCGACCGCAAAGA</canonical>
            <polymorphic>CCCCACACAAACTTCCCCTAATCCAATTAACCCATTCCATCTCCTCTATCTTCTTCACCTTCTCCTAATCATAAACTGCCAACCTTCACACCTGAATGCCACGTCATAATCCTTTTGTCCTTGTTCCTCCAAACGGCCACATCAAAGAAAAAAAGGAGAGAAGAAGAAGAAGAATCTTGTCATAAACCTCCGTTTCCTCTTCCTCCGAATGTCCTTTCTCAGGTTTTCGAACGGCGAGAAGAGTTCGAGAAAAATGTGATCAAGCGTGTCAATCTGTCTCGGAAGATCGACGGAAAGAGGCAATCCAATTATTATCCACACTTTTTAATTATTGCTGTAAAAAACCGTAAAACCTGGGTTTTAAAACTTTGAGCCTATTTATCTCGGTTTCTGGAAAAGATATCAGAAAGTTGCCAACTGATAGAAGATTGCTAATGTTATGATGAACATTTCATTAATTAGCAAAATTTTGACATCATTGACAGGAATGGAGATATGTWCGGTCAAAGGAAGAGGACGGTCTCGTTGCAGCCGTTTTTCGGCCGTATCTGCACTTTGAGCTTGACTATCTTGGTTCTTGGAAAAGATATCAAAAATTCCTCAACTAATAAAATATTTATCATAATGTGCTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATTAAAAAGTGATCAACTAATAAAATGTCACTGATATTATGATAAACACTTTATCAGTTGTTAACTTTTTGATATCTTTTACAGGGACCGAAATAATTATAGTCAAAGTTTAGGGAAATTCTTTTACTGTTTCTAACAATACGTTTATGGCGTTTCGGAAGCATCTGGAAAACCTCTGAACATTTTTTAATTTAATACCTCACAATCTAAAAAACACCTAATTTTCATTTTCAGCTTTTCAAGTGTTTTTCTTACCATTTTTTTTACGTTTTCTCTCAAAAATATTCCCCTATCTCTTAAGACATTAAGAGATCAAAAAACCTGGCGACCGCAAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>346 272 209 156 17</canonical_bands>
                <polymorphic_bands>346 272 209 173</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACACTTTTTAATTATTGCTGT</pcr_primer_p1>
		<pcr_primer_p2>GCCATAAACGTATTGTTAGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>499</pcr_amplicon_size>
		<canonical_amplicon>CCACACTTTTTAATTATTGCTGTAAAAAACCGTAAAACCTGGGTTTTAAAACTTTGAGCCTATTTATCTCGGTTTCTGGAAAAGATATCAGAAAGTTGCCAACTGATAGAAGATTGCTAATGTTATGATGAACATTTCATTAATTAGCAAAATTTTGACATCATTGACAGGAATGGAGATATGTACGGTCAAAGGAAGAGGACGGTCTCGTTGCAGCCGTTTTTCGGCCGTATCTGCACTTTGAGCTTGACTATCTTGGTTCTTGGAAAAGATATCAAAAATTCCTCAACTAATAAAATATTTATCATAATGTGCTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATTAAAAAGTGATCAACTAATAAAATGTCACTGATATTATGATAAACACTTTATCAGTTGTTAACTTTTTGATATCTTTTACAGGGACCGAAATAATTATAGTCAAAGTTTAGGGAAATTCTTTTACTGTTTCTAACAATACGTTTATGGC</canonical_amplicon>
		<polymorphic_amplicon>CCACACTTTTTAATTATTGCTGTAAAAAACCGTAAAACCTGGGTTTTAAAACTTTGAGCCTATTTATCTCGGTTTCTGGAAAAGATATCAGAAAGTTGCCAACTGATAGAAGATTGCTAATGTTATGATGAACATTTCATTAATTAGCAAAATTTTGACATCATTGACAGGAATGGAGATATGTWCGGTCAAAGGAAGAGGACGGTCTCGTTGCAGCCGTTTTTCGGCCGTATCTGCACTTTGAGCTTGACTATCTTGGTTCTTGGAAAAGATATCAAAAATTCCTCAACTAATAAAATATTTATCATAATGTGCTTGAGCCAATTTATCTCGGTTCATGTGAAAGATATTAAAAAGTGATCAACTAATAAAATGTCACTGATATTATGATAAACACTTTATCAGTTGTTAACTTTTTGATATCTTTTACAGGGACCGAAATAATTATAGTCAAAGTTTAGGGAAATTCTTTTACTGTTTCTAACAATACGTTTATGGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39450</snp_id>
        <super_contig>c013701045.Contig1</super_contig>
        <contig_pos>65370</contig_pos>
        <strand></strand>
        <context>gagagagaga[G/A]agagagagag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CTGGTGGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA</left_flank>
        <right_flank>AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTGGCAACTGCTTTTCTCGGTGTCCCATTTGCCGCTGATTTTGGCTTCTGCTGCATCTGCTGTTGATGTTGGAACGCATTCAGAACCATTCCCATCTGAGCCATTTGAAGCATCTGGGACATTTGTTGTTGCGCGGCGTTCATTGCTGGGGAAGGTTTGGAGGCTCCAGAAGACGTCGATGGCTTAGAAGGTGTGGCTCCAGAAGACGTGGAGGCTACAGAAGATGTTGAAGGCTTAACGGCGGCTGCTGCCGCCTTCTTGGCCATTTCTGCCATTTGTTGCTGGAGCAGCTTTTGCTGTTGGTTCTGTTGGGACTGTTGCTGAGCAGCTTGTTGCTGCTGAGCTTGTAAGGCCATGAGAAGAAGTAGCTGGTTTGGATTTGCATTGTCCATGGTTTACTTTTTCACATGGGAAACAGTTGAGGGTTCTGAAAAAATTTAACTATTAGCTGGTGGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAGAGAGAGGTGGCATAAAAGGGGGTATATCTCAATATTCAGCAGAGATATCCAAAAACAGTTAACTAAAAAAATGAAGAGCATAAAATTTTACACATTTTGATTAAAAAAATTTTTTGGTAACTGTTATGCTTTTAAAAATACATCGCTTTAAAGTAAGAGCACGCTAAAAAAAGGAGGTGTTAACTTCATGTGCTATATCTCAAAAACTACAAAAGCTATCAAAAAGCTGTGAACTACAAAAATATAGAATATAGAATTTTAAACATTTTTATGATTAACAAAATTTTAGTAGCTTTATTAGTTTTTGAGATATAACGCTTTGAAGTTGGAGCATACAAAAACGGAAAAAAGAATTAACTTTAAAGACGACTCAAAGACTAGAGTAGCTATTAAAGAATTAAAAATTGTAAAACAGAGCGC</canonical>
            <polymorphic>CGTGGCAACTGCTTTTCTCGGTGTCCCATTTGCCGCTGATTTTGGCTTCTGCTGCATCTGCTGTTGATGTTGGAACGCATTCAGAACCATTCCCATCTGAGCCATTTGAAGCATCTGGGACATTTGTTGTTGCGCGGCGTTCATTGCTGGGGAAGGTTTGGAGGCTCCAGAAGACGTCGATGGCTTAGAAGGTGTGGCTCCAGAAGACGTGGAGGCTACAGAAGATGTTGAAGGCTTAACGGCGGCTGCTGCCGCCTTCTTGGCCATTTCTGCCATTTGTTGCTGGAGCAGCTTTTGCTGTTGGTTCTGTTGGGACTGTTGCTGAGCAGCTTGTTGCTGCTGAGCTTGTAAGGCCATGAGAAGAAGTAGCTGGTTTGGATTTGCATTGTCCATGGTTTACTTTTTCACATGGGAAACAGTTGAGGGTTCTGAAAAAATTTAACTATTAGCTGGTGGAGAGAAAGAGAAAGAGAGAGAGARAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAGAGAGAGGTGGCATAAAAGGGGGTATATCTCAATATTCAGCAGAGATATCCAAAAACAGTTAACTAAAAAAATGAAGAGCATAAAATTTTACACATTTTGATTAAAAAAATTTTTTGGTAACTGTTATGCTTTTAAAAATACATCGCTTTAAAGTAAGAGCACGCTAAAAAAAGGAGGTGTTAACTTCATGTGCTATATCTCAAAAACTACAAAAGCTATCAAAAAGCTGTGAACTACAAAAATATAGAATATAGAATTTTAAACATTTTTATGATTAACAAAATTTTAGTAGCTTTATTAGTTTTTGAGATATAACGCTTTGAAGTTGGAGCATACAAAAACGGAAAAAAGAATTAACTTTAAAGACGACTCAAAGACTAGAGTAGCTATTAAAGAATTAAAAATTGTAAAACAGAGCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTGAGGGTTCTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCAGTTCTATGAGTTCTGAGATT</pcr_primer_p2>
		<pcr_amplicon_size>868</pcr_amplicon_size>
		<canonical_amplicon>CAGTTGAGGGTTCTGAAAAAATTTAACTATTAGCTGGTGGAGAGAAAGAGAAAGAGAGAGAGARAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTGAGGGTTCTGAAAAAATTTAACTATTAGCTGGTGGAGAGAAAGAGAAAGAGAGAGAGARAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39451</snp_id>
        <super_contig>c013701045.Contig1</super_contig>
        <contig_pos>65446</contig_pos>
        <strand></strand>
        <context>gagagagaga[A/G]ggagagagag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA</left_flank>
        <right_flank>GGAGAGAGAGGTGGCATAAAAGGGGGTATATCTCAATATTCAGCAGAGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCATTCAGAACCATTCCCATCTGAGCCATTTGAAGCATCTGGGACATTTGTTGTTGCGCGGCGTTCATTGCTGGGGAAGGTTTGGAGGCTCCAGAAGACGTCGATGGCTTAGAAGGTGTGGCTCCAGAAGACGTGGAGGCTACAGAAGATGTTGAAGGCTTAACGGCGGCTGCTGCCGCCTTCTTGGCCATTTCTGCCATTTGTTGCTGGAGCAGCTTTTGCTGTTGGTTCTGTTGGGACTGTTGCTGAGCAGCTTGTTGCTGCTGAGCTTGTAAGGCCATGAGAAGAAGTAGCTGGTTTGGATTTGCATTGTCCATGGTTTACTTTTTCACATGGGAAACAGTTGAGGGTTCTGAAAAAATTTAACTATTAGCTGGTGGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAGAGAGAGGTGGCATAAAAGGGGGTATATCTCAATATTCAGCAGAGATATCCAAAAACAGTTAACTAAAAAAATGAAGAGCATAAAATTTTACACATTTTGATTAAAAAAATTTTTTGGTAACTGTTATGCTTTTAAAAATACATCGCTTTAAAGTAAGAGCACGCTAAAAAAAGGAGGTGTTAACTTCATGTGCTATATCTCAAAAACTACAAAAGCTATCAAAAAGCTGTGAACTACAAAAATATAGAATATAGAATTTTAAACATTTTTATGATTAACAAAATTTTAGTAGCTTTATTAGTTTTTGAGATATAACGCTTTGAAGTTGGAGCATACAAAAACGGAAAAAAGAATTAACTTTAAAGACGACTCAAAGACTAGAGTAGCTATTAAAGAATTAAAAATTGTAAAACAGAGCGCATAAAATTTTACACGTTTTGATAATTGACAAAAGTTAGGTAGCGTTTTTAGGTTTTGAGATATGAGGCTTTGAAGT</canonical>
            <polymorphic>GCATTCAGAACCATTCCCATCTGAGCCATTTGAAGCATCTGGGACATTTGTTGTTGCGCGGCGTTCATTGCTGGGGAAGGTTTGGAGGCTCCAGAAGACGTCGATGGCTTAGAAGGTGTGGCTCCAGAAGACGTGGAGGCTACAGAAGATGTTGAAGGCTTAACGGCGGCTGCTGCCGCCTTCTTGGCCATTTCTGCCATTTGTTGCTGGAGCAGCTTTTGCTGTTGGTTCTGTTGGGACTGTTGCTGAGCAGCTTGTTGCTGCTGAGCTTGTAAGGCCATGAGAAGAAGTAGCTGGTTTGGATTTGCATTGTCCATGGTTTACTTTTTCACATGGGAAACAGTTGAGGGTTCTGAAAAAATTTAACTATTAGCTGGTGGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGARGGAGAGAGAGGTGGCATAAAAGGGGGTATATCTCAATATTCAGCAGAGATATCCAAAAACAGTTAACTAAAAAAATGAAGAGCATAAAATTTTACACATTTTGATTAAAAAAATTTTTTGGTAACTGTTATGCTTTTAAAAATACATCGCTTTAAAGTAAGAGCACGCTAAAAAAAGGAGGTGTTAACTTCATGTGCTATATCTCAAAAACTACAAAAGCTATCAAAAAGCTGTGAACTACAAAAATATAGAATATAGAATTTTAAACATTTTTATGATTAACAAAATTTTAGTAGCTTTATTAGTTTTTGAGATATAACGCTTTGAAGTTGGAGCATACAAAAACGGAAAAAAGAATTAACTTTAAAGACGACTCAAAGACTAGAGTAGCTATTAAAGAATTAAAAATTGTAAAACAGAGCGCATAAAATTTTACACGTTTTGATAATTGACAAAAGTTAGGTAGCGTTTTTAGGTTTTGAGATATGAGGCTTTGAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTTGAGGGTTCTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCAGTTCTATGAGTTCTGAGATT</pcr_primer_p2>
		<pcr_amplicon_size>868</pcr_amplicon_size>
		<canonical_amplicon>CAGTTGAGGGTTCTGAAAAAATTTAACTATTAGCTGGTGGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAGAGAGAGGTGGCATAAAAG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTGAGGGTTCTGAAAAAATTTAACTATTAGCTGGTGGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGARGGAGAGAGAGGTGGCATAAAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39452</snp_id>
        <super_contig>c013701045.Contig1</super_contig>
        <contig_pos>65552</contig_pos>
        <strand></strand>
        <context>acattttgat[T/C]aaaaaaattt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AAAACAGTTAACTAAAAAAATGAAGAGCATAAAATTTTACACATTTTGAT</left_flank>
        <right_flank>AAAAAAATTTTTTGGTAACTGTTATGCTTTTAAAAATACATCGCTTTAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTTAGAAGGTGTGGCTCCAGAAGACGTGGAGGCTACAGAAGATGTTGAAGGCTTAACGGCGGCTGCTGCCGCCTTCTTGGCCATTTCTGCCATTTGTTGCTGGAGCAGCTTTTGCTGTTGGTTCTGTTGGGACTGTTGCTGAGCAGCTTGTTGCTGCTGAGCTTGTAAGGCCATGAGAAGAAGTAGCTGGTTTGGATTTGCATTGTCCATGGTTTACTTTTTCACATGGGAAACAGTTGAGGGTTCTGAAAAAATTTAACTATTAGCTGGTGGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAGAGAGAGGTGGCATAAAAGGGGGTATATCTCAATATTCAGCAGAGATATCCAAAAACAGTTAACTAAAAAAATGAAGAGCATAAAATTTTACACATTTTGATTAAAAAAATTTTTTGGTAACTGTTATGCTTTTAAAAATACATCGCTTTAAAGTAAGAGCACGCTAAAAAAAGGAGGTGTTAACTTCATGTGCTATATCTCAAAAACTACAAAAGCTATCAAAAAGCTGTGAACTACAAAAATATAGAATATAGAATTTTAAACATTTTTATGATTAACAAAATTTTAGTAGCTTTATTAGTTTTTGAGATATAACGCTTTGAAGTTGGAGCATACAAAAACGGAAAAAAGAATTAACTTTAAAGACGACTCAAAGACTAGAGTAGCTATTAAAGAATTAAAAATTGTAAAACAGAGCGCATAAAATTTTACACGTTTTGATAATTGACAAAAGTTAGGTAGCGTTTTTAGGTTTTGAGATATGAGGCTTTGAAGTTACGCTAGCTGCAATCGCGACTAGGAGGAAGTGGCGCCAACTTCAAAGCGCCATATCTCAAAAACCAAGTTAGCTTGCAAAAAGCTGTAAACTACAAAACTGTAGA</canonical>
            <polymorphic>GCTTAGAAGGTGTGGCTCCAGAAGACGTGGAGGCTACAGAAGATGTTGAAGGCTTAACGGCGGCTGCTGCCGCCTTCTTGGCCATTTCTGCCATTTGTTGCTGGAGCAGCTTTTGCTGTTGGTTCTGTTGGGACTGTTGCTGAGCAGCTTGTTGCTGCTGAGCTTGTAAGGCCATGAGAAGAAGTAGCTGGTTTGGATTTGCATTGTCCATGGTTTACTTTTTCACATGGGAAACAGTTGAGGGTTCTGAAAAAATTTAACTATTAGCTGGTGGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAGAGAGAGGTGGCATAAAAGGGGGTATATCTCAATATTCAGCAGAGATATCCAAAAACAGTTAACTAAAAAAATGAAGAGCATAAAATTTTACACATTTTGATYAAAAAAATTTTTTGGTAACTGTTATGCTTTTAAAAATACATCGCTTTAAAGTAAGAGCACGCTAAAAAAAGGAGGTGTTAACTTCATGTGCTATATCTCAAAAACTACAAAAGCTATCAAAAAGCTGTGAACTACAAAAATATAGAATATAGAATTTTAAACATTTTTATGATTAACAAAATTTTAGTAGCTTTATTAGTTTTTGAGATATAACGCTTTGAAGTTGGAGCATACAAAAACGGAAAAAAGAATTAACTTTAAAGACGACTCAAAGACTAGAGTAGCTATTAAAGAATTAAAAATTGTAAAACAGAGCGCATAAAATTTTACACGTTTTGATAATTGACAAAAGTTAGGTAGCGTTTTTAGGTTTTGAGATATGAGGCTTTGAAGTTACGCTAGCTGCAATCGCGACTAGGAGGAAGTGGCGCCAACTTCAAAGCGCCATATCTCAAAAACCAAGTTAGCTTGCAAAAAGCTGTAAACTACAAAACTGTAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>204 203 200 79 79 54 42 32 31 30 16 16 8 6</canonical_bands>
                <polymorphic_bands>204 203 200 79 79 73 54 32 30 16 16 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTTGAGGGTTCTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCAGTTCTATGAGTTCTGAGATT</pcr_primer_p2>
		<pcr_amplicon_size>868</pcr_amplicon_size>
		<canonical_amplicon>CAGTTGAGGGTTCTGAAAAAATTTAACTATTAGCTGGTGGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAGAGAGAGGTGGCATAAAAGGGGGTATATCTCAATATTCAGCAGAGATATCCAAAAACAGTTAACTAAAAAAATGAAGAGCATAAAATTTTACACATTTTGATTAAAAAAATTTTTTGGTAACTGT</canonical_amplicon>
		<polymorphic_amplicon>CAGTTGAGGGTTCTGAAAAAATTTAACTATTAGCTGGTGGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAGAGAGAGGTGGCATAAAAGGGGGTATATCTCAATATTCAGCAGAGATATCCAAAAACAGTTAACTAAAAAAATGAAGAGCATAAAATTTTACACATTTTGATYAAAAAAATTTTTTGGTAACTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39453</snp_id>
        <super_contig>c013701045.Contig1</super_contig>
        <contig_pos>65681</contig_pos>
        <strand></strand>
        <context>aaaaagctgt[G/A]aactacaaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAACTTCATGTGCTATATCTCAAAAACTACAAAAGCTATCAAAAAGCTGT</left_flank>
        <right_flank>AACTACAAAAATATAGAATATAGAATTTTAAACATTTTTATGATTAACAA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGACTGTTGCTGAGCAGCTTGTTGCTGCTGAGCTTGTAAGGCCATGAGAAGAAGTAGCTGGTTTGGATTTGCATTGTCCATGGTTTACTTTTTCACATGGGAAACAGTTGAGGGTTCTGAAAAAATTTAACTATTAGCTGGTGGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAGAGAGAGGTGGCATAAAAGGGGGTATATCTCAATATTCAGCAGAGATATCCAAAAACAGTTAACTAAAAAAATGAAGAGCATAAAATTTTACACATTTTGATTAAAAAAATTTTTTGGTAACTGTTATGCTTTTAAAAATACATCGCTTTAAAGTAAGAGCACGCTAAAAAAAGGAGGTGTTAACTTCATGTGCTATATCTCAAAAACTACAAAAGCTATCAAAAAGCTGTGAACTACAAAAATATAGAATATAGAATTTTAAACATTTTTATGATTAACAAAATTTTAGTAGCTTTATTAGTTTTTGAGATATAACGCTTTGAAGTTGGAGCATACAAAAACGGAAAAAAGAATTAACTTTAAAGACGACTCAAAGACTAGAGTAGCTATTAAAGAATTAAAAATTGTAAAACAGAGCGCATAAAATTTTACACGTTTTGATAATTGACAAAAGTTAGGTAGCGTTTTTAGGTTTTGAGATATGAGGCTTTGAAGTTACGCTAGCTGCAATCGCGACTAGGAGGAAGTGGCGCCAACTTCAAAGCGCCATATCTCAAAAACCAAGTTAGCTTGCAAAAAGCTGTAAACTACAAAACTGTAGAGTATTAAATTTTAAACATTTTGGCAGTTAGCAAAGTTATGATAGCTCTACTAGTTTTTGAGATACAACGCTTTGAAACAAATCTCAGAACTCATAGAACTGGCGGGCGAAAAAAAGGCCCCCATTAACC</canonical>
            <polymorphic>GGGACTGTTGCTGAGCAGCTTGTTGCTGCTGAGCTTGTAAGGCCATGAGAAGAAGTAGCTGGTTTGGATTTGCATTGTCCATGGTTTACTTTTTCACATGGGAAACAGTTGAGGGTTCTGAAAAAATTTAACTATTAGCTGGTGGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAGAGAGAGGTGGCATAAAAGGGGGTATATCTCAATATTCAGCAGAGATATCCAAAAACAGTTAACTAAAAAAATGAAGAGCATAAAATTTTACACATTTTGATTAAAAAAATTTTTTGGTAACTGTTATGCTTTTAAAAATACATCGCTTTAAAGTAAGAGCACGCTAAAAAAAGGAGGTGTTAACTTCATGTGCTATATCTCAAAAACTACAAAAGCTATCAAAAAGCTGTRAACTACAAAAATATAGAATATAGAATTTTAAACATTTTTATGATTAACAAAATTTTAGTAGCTTTATTAGTTTTTGAGATATAACGCTTTGAAGTTGGAGCATACAAAAACGGAAAAAAGAATTAACTTTAAAGACGACTCAAAGACTAGAGTAGCTATTAAAGAATTAAAAATTGTAAAACAGAGCGCATAAAATTTTACACGTTTTGATAATTGACAAAAGTTAGGTAGCGTTTTTAGGTTTTGAGATATGAGGCTTTGAAGTTACGCTAGCTGCAATCGCGACTAGGAGGAAGTGGCGCCAACTTCAAAGCGCCATATCTCAAAAACCAAGTTAGCTTGCAAAAAGCTGTAAACTACAAAACTGTAGAGTATTAAATTTTAAACATTTTGGCAGTTAGCAAAGTTATGATAGCTCTACTAGTTTTTGAGATACAACGCTTTGAAACAAATCTCAGAACTCATAGAACTGGCGGGCGAAAAAAAGGCCCCCATTAACC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>202 202 134 96 96 83 69 48 39 18 13</canonical_bands>
                <polymorphic_bands>241 202 134 96 96 83 69 48 18 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTTGAGGGTTCTGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCAGTTCTATGAGTTCTGAGATT</pcr_primer_p2>
		<pcr_amplicon_size>868</pcr_amplicon_size>
		<canonical_amplicon>CAGTTGAGGGTTCTGAAAAAATTTAACTATTAGCTGGTGGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAGAGAGAGGTGGCATAAAAGGGGGTATATCTCAATATTCAGCAGAGATATCCAAAAACAGTTAACTAAAAAAATGAAGAGCATAAAATTTTACACATTTTGATTAAAAAAATTTTTTGGTAACTGTTATGCTTTTAAAAATACATCGCTTTAAAGTAAGAGCACGCTAAAAAAAGGAGGTGTTAACTTCATGTGCTATATCTCAAAAACTACAAAAGCTATCAAAAAGCTGTGAACTACAAAAATATAGAATATAGAATTTTAAACATTTTTATGATTAACAAAATTTTAGTAGCTTTATTAGTTTTTGAGATATAACGCTTTGAAGTTGGAGCATACAAAAACGGAAAAAAGAATTAACTTTAAAGACGACTCAAAGACTAGAGTAGCTATTAAAGAATTAAAAATTGTAAAACAGAGCGCATAAAATTTTACACGTTTTGATAATTGACAAAAGTTAGGTAGCGTTTTTAGGTTTTGAGATATGAGGCTTTGAAGTTACGCTAGCTGCAATCGCGACTAGGAGGAAGTGGCGCCAACTTCAAAGCGCCATATCTCAAAAACCAAGTTAGCTTGCAAAAAGCTGTAAACTACAAAACTGTAGAGTATTAAATTTTAAACATTTTGGCAGTTAGCAAAGTTATGATAGCTCTACTAGTTTTTGAGATACAACGCTTTGAAACAAATCTCAGAACTCATAGAACTGG</canonical_amplicon>
		<polymorphic_amplicon>CAGTTGAGGGTTCTGAAAAAATTTAACTATTAGCTGGTGGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGAGAGAGAGGTGGCATAAAAGGGGGTATATCTCAATATTCAGCAGAGATATCCAAAAACAGTTAACTAAAAAAATGAAGAGCATAAAATTTTACACATTTTGATTAAAAAAATTTTTTGGTAACTGTTATGCTTTTAAAAATACATCGCTTTAAAGTAAGAGCACGCTAAAAAAAGGAGGTGTTAACTTCATGTGCTATATCTCAAAAACTACAAAAGCTATCAAAAAGCTGTRAACTACAAAAATATAGAATATAGAATTTTAAACATTTTTATGATTAACAAAATTTTAGTAGCTTTATTAGTTTTTGAGATATAACGCTTTGAAGTTGGAGCATACAAAAACGGAAAAAAGAATTAACTTTAAAGACGACTCAAAGACTAGAGTAGCTATTAAAGAATTAAAAATTGTAAAACAGAGCGCATAAAATTTTACACGTTTTGATAATTGACAAAAGTTAGGTAGCGTTTTTAGGTTTTGAGATATGAGGCTTTGAAGTTACGCTAGCTGCAATCGCGACTAGGAGGAAGTGGCGCCAACTTCAAAGCGCCATATCTCAAAAACCAAGTTAGCTTGCAAAAAGCTGTAAACTACAAAACTGTAGAGTATTAAATTTTAAACATTTTGGCAGTTAGCAAAGTTATGATAGCTCTACTAGTTTTTGAGATACAACGCTTTGAAACAAATCTCAGAACTCATAGAACTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39454</snp_id>
        <super_contig>c013701045.Contig1</super_contig>
        <contig_pos>68307</contig_pos>
        <strand>+</strand>
        <context>CCATCTAGAA[C/T]CTTGAAAACC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCGTTTTAGGGGTAAATAAGGTAGTTTAGAGCATCTGGAACCATCTAGAA</left_flank>
        <right_flank>CTTGAAAACCCAAGGAAAAACGTAGAAAACTGCCAAAATTTCGTCAAAGA</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCAACCAAAGTCCTCCGTTCAATTTCTCTTTCTTTCTTATCCGGACACAGCTAGATAGGCAGCTGTTTCGTTTCTTTCTGGTGTCTTTTCATTCTCTCTTTTACAAACAAAGCAATTACTTTCTCATGTCACCCCTCTTCGTCTTCTTTATCCCCTAGCCTGAACGAGTCCTCTTGTAATCCGCTGCAGATGTCTTACCGCAAAGGTCTTTTCTAGAATCTAGACTAAAAATTGAAACTTGAGAATGTGTGGAATTCTAGCTATCCTCCCCGGCGCTGCGCGCCACCGAAAACCGCCCGATAGAGTACCACCCACCTTACCTTCTCAGTGGGGTGTGAAGCGCAGCTTGTTACAGTTTTGCCAACCAATCTGAAGGTTAGGGGTTCGATTTCACCTGGGGTAATCTCCTTTTTTAAGATTTTGCAAGTCCCTTTTAGACGATTTAAAGGCGTTTTAGGGGTAAATAAGGTAGTTTAGAGCATCTGGAACCATCTAGAATCTTGAAAACCCAAGGAAAAACGTAGAAAACTGCCAAAATTTCGTCAAAGATCCTACAAACTAAAAGAAGCGAATTTCGGGGGTTCTCTATCAATCTTGGGAGCCAAGGGGACCCGCCGATGACACAAAATGAGAAACGTACACGATGAAGGGTAGGCAAAAATGTGTGTTTTCGTGAGAGTGAAGTGAAAAAAAAGTGTCTCTTTGTGTTGTTGCTCCGAGAGCAAAGCAAGAGAGAGCTTGAATGGAGATGGAAGAAGCTAAAGTATTCGTTTTTTTTTTCGCTGTGCTTTCCGTGGAATTGAGAAGAAGTGGTAGAAGAAAAAAAAAGAAGACGACGTGAAAGCTCATGTATGTGGCTAAAAAAGCATGGAGCCGGGTGTGGCGGGAGAAAAAAGGCGGAAAAAACTTTCAGAGAGATTAGCAGATTAACGAATTCGGTTTTCCTTTTTCTTTGGATAAGTTGCTGCTGGCGCGGAAATTTGGAAGTCTCGGCATCAG</canonical>
            <polymorphic>TCCAACCAAAGTCCTCCGTTCAATTTCTCTTTCTTTCTTATCCGGACACAGCTAGATAGGCAGCTGTTTCGTTTCTTTCTGGTGTCTTTTCATTCTCTCTTTTACAAACAAAGCAATTACTTTCTCATGTCACCCCTCTTCGTCTTCTTTATCCCCTAGCCTGAACGAGTCCTCTTGTAATCCGCTGCAGATGTCTTACCGCAAAGGTCTTTTCTAGAATCTAGACTAAAAATTGAAACTTGAGAATGTGTGGAATTCTAGCTATCCTCCCCGGCGCTGCGCGCCACCGAAAACCGCCCGATAGAGTACCACCCACCTTACCTTCTCAGTGGGGTGTGAAGCGCAGCTTGTTACAGTTTTGCCAACCAATCTGAAGGTTAGGGGTTCGATTTCACCTGGGGTAATCTCCTTTTTTAAGATTTTGCAAGTCCCTTTTAGACGATTTAAAGGCGTTTTAGGGGTAAATAAGGTAGTTTAGAGCATCTGGAACCATCTAGAAYCTTGAAAACCCAAGGAAAAACGTAGAAAACTGCCAAAATTTCGTCAAAGATCCTACAAACTAAAAGAAGCGAATTTCGGGGGTTCTCTATCAATCTTGGGAGCCAAGGGGACCCGCCGATGACACAAAATGAGAAACGTACACGATGAAGGGTAGGCAAAAATGTGTGTTTTCGTGAGAGTGAAGTGAAAAAAAAGTGTCTCTTTGTGTTGTTGCTCCGAGAGCAAAGCAAGAGAGAGCTTGAATGGAGATGGAAGAAGCTAAAGTATTCGTTTTTTTTTTCGCTGTGCTTTCCGTGGAATTGAGAAGAAGTGGTAGAAGAAAAAAAAAGAAGACGACGTGAAAGCTCATGTATGTGGCTAAAAAAGCATGGAGCCGGGTGTGGCGGGAGAAAAAAGGCGGAAAAAACTTTCAGAGAGATTAGCAGATTAACGAATTCGGTTTTCCTTTTTCTTTGGATAAGTTGCTGCTGGCGCGGAAATTTGGAAGTCTCGGCATCAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>503 280 167 50</canonical_bands>
                <polymorphic_bands>783 167 50</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>327 263 172 172 42 10 7 7</canonical_bands>
                <polymorphic_bands>327 263 179 172 42 10 7</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>503 280 217</canonical_bands>
                <polymorphic_bands>783 217</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGTCCCTTTTAGACGATTTA</pcr_primer_p1>
		<pcr_primer_p2>AAAACACACATTTTTGCCTAC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAAGTCCCTTTTAGACGATTTAAAGGCGTTTTAGGGGTAAATAAGGTAGTTTAGAGCATCTGGAACCATCTAGAATCTTGAAAACCCAAGGAAAAACGTAGAAAACTGCCAAAATTTCGTCAAAGATCCTACAAACTAAAAGAAGCGAATTTCGGGGGTTCTCTATCAATCTTGGGAGCCAAGGGGACCCGCCGATGACACAAAATGAGAAACGTACACGATGAAGGGTAGGCAAAAATGTGTGTTTT</canonical_amplicon>
		<polymorphic_amplicon>CAAGTCCCTTTTAGACGATTTAAAGGCGTTTTAGGGGTAAATAAGGTAGTTTAGAGCATCTGGAACCATCTAGAAYCTTGAAAACCCAAGGAAAAACGTAGAAAACTGCCAAAATTTCGTCAAAGATCCTACAAACTAAAAGAAGCGAATTTCGGGGGTTCTCTATCAATCTTGGGAGCCAAGGGGACCCGCCGATGACACAAAATGAGAAACGTACACGATGAAGGGTAGGCAAAAATGTGTGTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39455</snp_id>
        <super_contig>c013701045.Contig1</super_contig>
        <contig_pos>84526</contig_pos>
        <strand>+</strand>
        <context>TTTTTTTGGT[C/T]TYWAGATTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATACTAATTGTAAGATTCTGATTCTCTAATTTCTTGGGATTTTTTTTGGT</left_flank>
        <right_flank>TATAGATTCTTGATTTTCTAGATCATGAGAACTTTTAGAATATTTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGGCAAAAAGTTTGGGGTCAAAATATCACCTTTGAAAATTTGGCTGGAATTTCAGACAAATTTTCAAAATCGATATTTTGACCCCAGACTTTGGCAAAATGTTTCCTATAGCCAGATTGGAACACTCTCCGAGTTGTCGCGGAGTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTATACTGAAAGCGGTTTTGAAAAGCCACAGTGCGGCGTGACGGGCGTTAGTGCGCTTACAAGGAACTATTATTTTTACAATGCTAACAAGAATTAAAGCAAACTCACACATCAATTAGGTCCAAAATATTGTGATTCTCCATCGATTTTTAGGGTTAAATAGGCCGAGACAGTGACTATTAGGGAAAAGGAGGAGGGCAGTGTTGACAATGGCAGATGGTGAGAGCTGCATATGAATGACCTTGGTATGGTCCCATCCCCTAGGATACTAATTGTAAGATTCTGATTCTCTAATTTCTTGGGATTTTTTTTGGTTTATAGATTCTTGATTTTCTAGATCATGAGAACTTTTAGAATATTTTTTTTCCCAATCAAAAAAAAGTTCAAAAACATTCCCAATCAAAAAAAAGTTCAAAAATATAGGTTCAGGTTTTTGGGTCTCTTTTAGCTCCACGTTCCCCAGCTCATCTGAAAATGTGCCAAATTTTTTGACTGAAAATCCAGCAGTCTGAAAAAAATTCAATCAAAATTTACCGGCATTTTGCTTCCGTACAAACTTTGTAAGTTACAGTACCCCTCCCCCCTTTAATTTCAATTATCTCGGTTACTGCAAGAGATATCAAAAATAGGTCAGCTAATAAAATGCTTATCATAATATCAGCAAAATTTTATCAAAAACCCAGACCATTGAACTTAAAGTCTAGTGCCGTTCTATTAGAGGAAAATACTATTTTCCAGAGCAAATACAGATTGATTGTTACAAATATTCGAAAAAGAAAGAAAAAGTAAGAATCATTCGAATGTGGACCCACAACA</canonical>
            <polymorphic>TCGGCAAAAAGTTTGGGGTCAAAATATCACCTTTGAAAATTTGGCTGGAATTTCAGACAAATTTTCAAAATCGATATTTTGACCCCAGACTTTGGCAAAATGTTTCCTATAGCCAGATTGGAACACTCTCCGAGTTGTCGCGGAGTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTATACTGAAAGCGGTTTTGAAAAGCCACAGTGCGGCGTGACGGGCGTTAGTGCGCTTACAAGGAACTATTATTTTTACAATGCTAACAAGAATTAAAGCAAACTCACACATCAATTAGGTCCAAAATATTGTGATTCTCCATCGATTTTTAGGGTTAAATAGGCCGAGACAGTGACTATTAGGGAAAAGGAGGAGGGCAGTGTTGACAATGGCAGATGGTGAGAGCTGCATATGAATGACCTTGGTATGGTCCCATCCCCTAGGATACTAATTGTAAGATTCTGATTCTCTAATTTCTTGGGATTTTTTTTGGTYTATAGATTCTTGATTTTCTAGATCATGAGAACTTTTAGAATATTTTTTTTCCCAATCAAAAAAAAGTTCAAAAACATTCCCAATCAAAAAAAAGTTCAAAAATATAGGTTCAGGTTTTTGGGTCTCTTTTAGCTCCACGTTCCCCAGCTCATCTGAAAATGTGCCAAATTTTTTGACTGAAAATCCAGCAGTCTGAAAAAAATTCAATCAAAATTTACCGGCATTTTGCTTCCGTACAAACTTTGTAAGTTACAGTACCCCTCCCCCCTTTAATTTCAATTATCTCGGTTACTGCAAGAGATATCAAAAATAGGTCAGCTAATAAAATGCTTATCATAATATCAGCAAAATTTTATCAAAAACCCAGACCATTGAACTTAAAGTCTAGTGCCGTTCTATTAGAGGAAAATACTATTTTCCAGAGCAAATACAGATTGATTGTTACAAATATTCGAAAAAGAAAGAAAAAGTAAGAATCATTCGAATGTGGACCCACAACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGATTTTTAGGGTTAAATAGG</pcr_primer_p1>
		<pcr_primer_p2>GGGAATGTTTTTGAACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATCGATTTTTAGGGTTAAATAGGCCGAGACAGTGACTATTAGGGAAAAGGAGGAGGGCAGTGTTGACAATGGCAGATGGTGAGAGCTGCATATGAATGACCTTGGTATGGTCCCATCCCCTAGGATACTAATTGTAAGATTCTGATTCTCTAATTTCTTGGGATTTTTTTTGGTTTATAGATTCTTGATTTTCTAGATCATGAGAACTTTTAGAATATTTTTTTTCCCAATCAAAAAAAAGTTCAAAAACATTCCC</canonical_amplicon>
		<polymorphic_amplicon>ATCGATTTTTAGGGTTAAATAGGCCGAGACAGTGACTATTAGGGAAAAGGAGGAGGGCAGTGTTGACAATGGCAGATGGTGAGAGCTGCATATGAATGACCTTGGTATGGTCCCATCCCCTAGGATACTAATTGTAAGATTCTGATTCTCTAATTTCTTGGGATTTTTTTTGGTYTATAGATTCTTGATTTTCTAGATCATGAGAACTTTTAGAATATTTTTTTTCCCAATCAAAAAAAAGTTCAAAAACATTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39456</snp_id>
        <super_contig>c013701045.Contig1</super_contig>
        <contig_pos>84528</contig_pos>
        <strand>+</strand>
        <context>TTTTTGGTYT[C/T]WAGATTCTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACTAATTGTAAGATTCTGATTCTCTAATTTCTTGGGATTTTTTTTGGTTT</left_flank>
        <right_flank>TAGATTCTTGATTTTCTAGATCATGAGAACTTTTAGAATATTTTTTTTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCAAAAAGTTTGGGGTCAAAATATCACCTTTGAAAATTTGGCTGGAATTTCAGACAAATTTTCAAAATCGATATTTTGACCCCAGACTTTGGCAAAATGTTTCCTATAGCCAGATTGGAACACTCTCCGAGTTGTCGCGGAGTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTATACTGAAAGCGGTTTTGAAAAGCCACAGTGCGGCGTGACGGGCGTTAGTGCGCTTACAAGGAACTATTATTTTTACAATGCTAACAAGAATTAAAGCAAACTCACACATCAATTAGGTCCAAAATATTGTGATTCTCCATCGATTTTTAGGGTTAAATAGGCCGAGACAGTGACTATTAGGGAAAAGGAGGAGGGCAGTGTTGACAATGGCAGATGGTGAGAGCTGCATATGAATGACCTTGGTATGGTCCCATCCCCTAGGATACTAATTGTAAGATTCTGATTCTCTAATTTCTTGGGATTTTTTTTGGTTTATAGATTCTTGATTTTCTAGATCATGAGAACTTTTAGAATATTTTTTTTCCCAATCAAAAAAAAGTTCAAAAACATTCCCAATCAAAAAAAAGTTCAAAAATATAGGTTCAGGTTTTTGGGTCTCTTTTAGCTCCACGTTCCCCAGCTCATCTGAAAATGTGCCAAATTTTTTGACTGAAAATCCAGCAGTCTGAAAAAAATTCAATCAAAATTTACCGGCATTTTGCTTCCGTACAAACTTTGTAAGTTACAGTACCCCTCCCCCCTTTAATTTCAATTATCTCGGTTACTGCAAGAGATATCAAAAATAGGTCAGCTAATAAAATGCTTATCATAATATCAGCAAAATTTTATCAAAAACCCAGACCATTGAACTTAAAGTCTAGTGCCGTTCTATTAGAGGAAAATACTATTTTCCAGAGCAAATACAGATTGATTGTTACAAATATTCGAAAAAGAAAGAAAAAGTAAGAATCATTCGAATGTGGACCCACAACATT</canonical>
            <polymorphic>GGCAAAAAGTTTGGGGTCAAAATATCACCTTTGAAAATTTGGCTGGAATTTCAGACAAATTTTCAAAATCGATATTTTGACCCCAGACTTTGGCAAAATGTTTCCTATAGCCAGATTGGAACACTCTCCGAGTTGTCGCGGAGTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTATACTGAAAGCGGTTTTGAAAAGCCACAGTGCGGCGTGACGGGCGTTAGTGCGCTTACAAGGAACTATTATTTTTACAATGCTAACAAGAATTAAAGCAAACTCACACATCAATTAGGTCCAAAATATTGTGATTCTCCATCGATTTTTAGGGTTAAATAGGCCGAGACAGTGACTATTAGGGAAAAGGAGGAGGGCAGTGTTGACAATGGCAGATGGTGAGAGCTGCATATGAATGACCTTGGTATGGTCCCATCCCCTAGGATACTAATTGTAAGATTCTGATTCTCTAATTTCTTGGGATTTTTTTTGGTTTYTAGATTCTTGATTTTCTAGATCATGAGAACTTTTAGAATATTTTTTTTCCCAATCAAAAAAAAGTTCAAAAACATTCCCAATCAAAAAAAAGTTCAAAAATATAGGTTCAGGTTTTTGGGTCTCTTTTAGCTCCACGTTCCCCAGCTCATCTGAAAATGTGCCAAATTTTTTGACTGAAAATCCAGCAGTCTGAAAAAAATTCAATCAAAATTTACCGGCATTTTGCTTCCGTACAAACTTTGTAAGTTACAGTACCCCTCCCCCCTTTAATTTCAATTATCTCGGTTACTGCAAGAGATATCAAAAATAGGTCAGCTAATAAAATGCTTATCATAATATCAGCAAAATTTTATCAAAAACCCAGACCATTGAACTTAAAGTCTAGTGCCGTTCTATTAGAGGAAAATACTATTTTCCAGAGCAAATACAGATTGATTGTTACAAATATTCGAAAAAGAAAGAAAAAGTAAGAATCATTCGAATGTGGACCCACAACATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGATTTTTAGGGTTAAATAGG</pcr_primer_p1>
		<pcr_primer_p2>GGGAATGTTTTTGAACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATCGATTTTTAGGGTTAAATAGGCCGAGACAGTGACTATTAGGGAAAAGGAGGAGGGCAGTGTTGACAATGGCAGATGGTGAGAGCTGCATATGAATGACCTTGGTATGGTCCCATCCCCTAGGATACTAATTGTAAGATTCTGATTCTCTAATTTCTTGGGATTTTTTTTGGTTTATAGATTCTTGATTTTCTAGATCATGAGAACTTTTAGAATATTTTTTTTCCCAATCAAAAAAAAGTTCAAAAACATTCCC</canonical_amplicon>
		<polymorphic_amplicon>ATCGATTTTTAGGGTTAAATAGGCCGAGACAGTGACTATTAGGGAAAAGGAGGAGGGCAGTGTTGACAATGGCAGATGGTGAGAGCTGCATATGAATGACCTTGGTATGGTCCCATCCCCTAGGATACTAATTGTAAGATTCTGATTCTCTAATTTCTTGGGATTTTTTTTGGTTTYTAGATTCTTGATTTTCTAGATCATGAGAACTTTTAGAATATTTTTTTTCCCAATCAAAAAAAAGTTCAAAAACATTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39457</snp_id>
        <super_contig>c013701045.Contig1</super_contig>
        <contig_pos>84529</contig_pos>
        <strand>+</strand>
        <context>TTTTGGTYTY[A/T]AGATTCTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTAATTGTAAGATTCTGATTCTCTAATTTCTTGGGATTTTTTTTGGTTTA</left_flank>
        <right_flank>AGATTCTTGATTTTCTAGATCATGAGAACTTTTAGAATATTTTTTTTCCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAAAAAGTTTGGGGTCAAAATATCACCTTTGAAAATTTGGCTGGAATTTCAGACAAATTTTCAAAATCGATATTTTGACCCCAGACTTTGGCAAAATGTTTCCTATAGCCAGATTGGAACACTCTCCGAGTTGTCGCGGAGTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTATACTGAAAGCGGTTTTGAAAAGCCACAGTGCGGCGTGACGGGCGTTAGTGCGCTTACAAGGAACTATTATTTTTACAATGCTAACAAGAATTAAAGCAAACTCACACATCAATTAGGTCCAAAATATTGTGATTCTCCATCGATTTTTAGGGTTAAATAGGCCGAGACAGTGACTATTAGGGAAAAGGAGGAGGGCAGTGTTGACAATGGCAGATGGTGAGAGCTGCATATGAATGACCTTGGTATGGTCCCATCCCCTAGGATACTAATTGTAAGATTCTGATTCTCTAATTTCTTGGGATTTTTTTTGGTTTATAGATTCTTGATTTTCTAGATCATGAGAACTTTTAGAATATTTTTTTTCCCAATCAAAAAAAAGTTCAAAAACATTCCCAATCAAAAAAAAGTTCAAAAATATAGGTTCAGGTTTTTGGGTCTCTTTTAGCTCCACGTTCCCCAGCTCATCTGAAAATGTGCCAAATTTTTTGACTGAAAATCCAGCAGTCTGAAAAAAATTCAATCAAAATTTACCGGCATTTTGCTTCCGTACAAACTTTGTAAGTTACAGTACCCCTCCCCCCTTTAATTTCAATTATCTCGGTTACTGCAAGAGATATCAAAAATAGGTCAGCTAATAAAATGCTTATCATAATATCAGCAAAATTTTATCAAAAACCCAGACCATTGAACTTAAAGTCTAGTGCCGTTCTATTAGAGGAAAATACTATTTTCCAGAGCAAATACAGATTGATTGTTACAAATATTCGAAAAAGAAAGAAAAAGTAAGAATCATTCGAATGTGGACCCACAACATTT</canonical>
            <polymorphic>GCAAAAAGTTTGGGGTCAAAATATCACCTTTGAAAATTTGGCTGGAATTTCAGACAAATTTTCAAAATCGATATTTTGACCCCAGACTTTGGCAAAATGTTTCCTATAGCCAGATTGGAACACTCTCCGAGTTGTCGCGGAGTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTATACTGAAAGCGGTTTTGAAAAGCCACAGTGCGGCGTGACGGGCGTTAGTGCGCTTACAAGGAACTATTATTTTTACAATGCTAACAAGAATTAAAGCAAACTCACACATCAATTAGGTCCAAAATATTGTGATTCTCCATCGATTTTTAGGGTTAAATAGGCCGAGACAGTGACTATTAGGGAAAAGGAGGAGGGCAGTGTTGACAATGGCAGATGGTGAGAGCTGCATATGAATGACCTTGGTATGGTCCCATCCCCTAGGATACTAATTGTAAGATTCTGATTCTCTAATTTCTTGGGATTTTTTTTGGTTTAWAGATTCTTGATTTTCTAGATCATGAGAACTTTTAGAATATTTTTTTTCCCAATCAAAAAAAAGTTCAAAAACATTCCCAATCAAAAAAAAGTTCAAAAATATAGGTTCAGGTTTTTGGGTCTCTTTTAGCTCCACGTTCCCCAGCTCATCTGAAAATGTGCCAAATTTTTTGACTGAAAATCCAGCAGTCTGAAAAAAATTCAATCAAAATTTACCGGCATTTTGCTTCCGTACAAACTTTGTAAGTTACAGTACCCCTCCCCCCTTTAATTTCAATTATCTCGGTTACTGCAAGAGATATCAAAAATAGGTCAGCTAATAAAATGCTTATCATAATATCAGCAAAATTTTATCAAAAACCCAGACCATTGAACTTAAAGTCTAGTGCCGTTCTATTAGAGGAAAATACTATTTTCCAGAGCAAATACAGATTGATTGTTACAAATATTCGAAAAAGAAAGAAAAAGTAAGAATCATTCGAATGTGGACCCACAACATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCGATTTTTAGGGTTAAATAGG</pcr_primer_p1>
		<pcr_primer_p2>GGGAATGTTTTTGAACTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>ATCGATTTTTAGGGTTAAATAGGCCGAGACAGTGACTATTAGGGAAAAGGAGGAGGGCAGTGTTGACAATGGCAGATGGTGAGAGCTGCATATGAATGACCTTGGTATGGTCCCATCCCCTAGGATACTAATTGTAAGATTCTGATTCTCTAATTTCTTGGGATTTTTTTTGGTTTATAGATTCTTGATTTTCTAGATCATGAGAACTTTTAGAATATTTTTTTTCCCAATCAAAAAAAAGTTCAAAAACATTCCC</canonical_amplicon>
		<polymorphic_amplicon>ATCGATTTTTAGGGTTAAATAGGCCGAGACAGTGACTATTAGGGAAAAGGAGGAGGGCAGTGTTGACAATGGCAGATGGTGAGAGCTGCATATGAATGACCTTGGTATGGTCCCATCCCCTAGGATACTAATTGTAAGATTCTGATTCTCTAATTTCTTGGGATTTTTTTTGGTTTAWAGATTCTTGATTTTCTAGATCATGAGAACTTTTAGAATATTTTTTTTCCCAATCAAAAAAAAGTTCAAAAACATTCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39458</snp_id>
        <super_contig>c013701045.Contig1</super_contig>
        <contig_pos>84569</contig_pos>
        <strand>+</strand>
        <context>TTTTAGAATA[A/T]TTTTTTTCCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTGGTTTATAGATTCTTGATTTTCTAGATCATGAGAACTTTTAGAATA</left_flank>
        <right_flank>TTTTTTTCCCAATCAAAAAAAAGTTCAAAAACATTCCCAATCAAAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTGGAATTTCAGACAAATTTTCAAAATCGATATTTTGACCCCAGACTTTGGCAAAATGTTTCCTATAGCCAGATTGGAACACTCTCCGAGTTGTCGCGGAGTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTATACTGAAAGCGGTTTTGAAAAGCCACAGTGCGGCGTGACGGGCGTTAGTGCGCTTACAAGGAACTATTATTTTTACAATGCTAACAAGAATTAAAGCAAACTCACACATCAATTAGGTCCAAAATATTGTGATTCTCCATCGATTTTTAGGGTTAAATAGGCCGAGACAGTGACTATTAGGGAAAAGGAGGAGGGCAGTGTTGACAATGGCAGATGGTGAGAGCTGCATATGAATGACCTTGGTATGGTCCCATCCCCTAGGATACTAATTGTAAGATTCTGATTCTCTAATTTCTTGGGATTTTTTTTGGTTTATAGATTCTTGATTTTCTAGATCATGAGAACTTTTAGAATATTTTTTTTCCCAATCAAAAAAAAGTTCAAAAACATTCCCAATCAAAAAAAAGTTCAAAAATATAGGTTCAGGTTTTTGGGTCTCTTTTAGCTCCACGTTCCCCAGCTCATCTGAAAATGTGCCAAATTTTTTGACTGAAAATCCAGCAGTCTGAAAAAAATTCAATCAAAATTTACCGGCATTTTGCTTCCGTACAAACTTTGTAAGTTACAGTACCCCTCCCCCCTTTAATTTCAATTATCTCGGTTACTGCAAGAGATATCAAAAATAGGTCAGCTAATAAAATGCTTATCATAATATCAGCAAAATTTTATCAAAAACCCAGACCATTGAACTTAAAGTCTAGTGCCGTTCTATTAGAGGAAAATACTATTTTCCAGAGCAAATACAGATTGATTGTTACAAATATTCGAAAAAGAAAGAAAAAGTAAGAATCATTCGAATGTGGACCCACAACATTTTCCTATTGTTTGCCTTCTGTTTTGGTGTGGTTTTAACTGG</canonical>
            <polymorphic>GCTGGAATTTCAGACAAATTTTCAAAATCGATATTTTGACCCCAGACTTTGGCAAAATGTTTCCTATAGCCAGATTGGAACACTCTCCGAGTTGTCGCGGAGTTTTTTTTTCCTTTTTTGCCGACTCCCTGAATAACCCCATTATACTGAAAGCGGTTTTGAAAAGCCACAGTGCGGCGTGACGGGCGTTAGTGCGCTTACAAGGAACTATTATTTTTACAATGCTAACAAGAATTAAAGCAAACTCACACATCAATTAGGTCCAAAATATTGTGATTCTCCATCGATTTTTAGGGTTAAATAGGCCGAGACAGTGACTATTAGGGAAAAGGAGGAGGGCAGTGTTGACAATGGCAGATGGTGAGAGCTGCATATGAATGACCTTGGTATGGTCCCATCCCCTAGGATACTAATTGTAAGATTCTGATTCTCTAATTTCTTGGGATTTTTTTTGGTTTATAGATTCTTGATTTTCTAGATCATGAGAACTTTTAGAATAWTTTTTTTCCCAATCAAAAAAAAGTTCAAAAACATTCCCAATCAAAAAAAAGTTCAAAAATATAGGTTCAGGTTTTTGGGTCTCTTTTAGCTCCACGTTCCCCAGCTCATCTGAAAATGTGCCAAATTTTTTGACTGAAAATCCAGCAGTCTGAAAAAAATTCAATCAAAATTTACCGGCATTTTGCTTCCGTACAAACTTTGTAAGTTACAGTACCCCTCCCCCCTTTAATTTCAATTATCTCGGTTACTGCAAGAGATATCAAAAATAGGTCAGCTAATAAAATGCTTATCATAATATCAGCAAAATTTTATCAAAAACCCAGACCATTGAACTTAAAGTCTAGTGCCGTTCTATTAGAGGAAAATACTATTTTCCAGAGCAAATACAGATTGATTGTTACAAATATTCGAAAAAGAAAGAAAAAGTAAGAATCATTCGAATGTGGACCCACAACATTTTCCTATTGTTTGCCTTCTGTTTTGGTGTGGTTTTAACTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>408 269 229 94</canonical_bands>
                <polymorphic_bands>637 269 94</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCCCTAGGATACTAATTGTAAGA</pcr_primer_p1>
		<pcr_primer_p2>ACTGCTGGATTTTCAGTCAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TCCCCTAGGATACTAATTGTAAGATTCTGATTCTCTAATTTCTTGGGATTTTTTTTGGTTTATAGATTCTTGATTTTCTAGATCATGAGAACTTTTAGAATATTTTTTTTCCCAATCAAAAAAAAGTTCAAAAACATTCCCAATCAAAAAAAAGTTCAAAAATATAGGTTCAGGTTTTTGGGTCTCTTTTAGCTCCACGTTCCCCAGCTCATCTGAAAATGTGCCAAATTTTTTGACTGAAAATCCAGCAGT</canonical_amplicon>
		<polymorphic_amplicon>TCCCCTAGGATACTAATTGTAAGATTCTGATTCTCTAATTTCTTGGGATTTTTTTTGGTTTATAGATTCTTGATTTTCTAGATCATGAGAACTTTTAGAATAWTTTTTTTCCCAATCAAAAAAAAGTTCAAAAACATTCCCAATCAAAAAAAAGTTCAAAAATATAGGTTCAGGTTTTTGGGTCTCTTTTAGCTCCACGTTCCCCAGCTCATCTGAAAATGTGCCAAATTTTTTGACTGAAAATCCAGCAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39459</snp_id>
        <super_contig>c013801131.Contig1</super_contig>
        <contig_pos>11552</contig_pos>
        <strand>+</strand>
        <context>ATAGGGTACC[A/T]TTTTTTTTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATAATATATGTGATTTATCGTTGCTACGCTTATCCTGATATAGGGTACC</left_flank>
        <right_flank>TTTTTTTTAAGTTGTAAAGGTTCAAAAAACAATTACAGGTATATAGAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAATCAACGATCAATGATTTGATCAAATTCAAATCATTCAATAAACATGTGTGCTCAATTTCACCTGTTCTTTACATTGTCAAGAGTTACTTTCTATGAAACGTGCCCAGCAAAAAAAAAATCAGCAGATGATTTTGATCTTCGAGTACTCAAAACAACACAATTCTACCTCAAAAAGCTCAACGAGCAATTCTTAAAATCTTATTTCAGTAAGACCTCTCAAAAATGAACGATACAGAAACTTCTGATTCCATCGATTCATTTGGAATTTCGTCCGTTATTCTTATTTACTCTGTCGTCTCAATGTTTGCTCTTCTCATTCTGATTTTCCCATTCTACGTGGTTGTAATTAGAGCGAATCGGAAAAAAGACAAATTGCTAACTGTATACCCAATCATCAGTCATTTCTATAAGGCTATCCGTTTTTTCTATTCAATTCTTTTCATCTTTATAATATATGTGATTTATCGTTGCTACGCTTATCCTGATATAGGGTACCTTTTTTTTTAAGTTGTAAAGGTTCAAAAAACAATTACAGGTATATAGAAACTCTACAACTTACCTCAATAATTGGAACTCTTTCCCTTATGGCAATTTTCGTACAAGCTCATAATTTTTTAATTATTCTTTTGTCTTTTCAACGATTTTACATATTCTTTTATCAGAAAGAACGCTCTAGGAACACTGGAAAGTATATTGAGCTGAATGCTGTAAAGATTTATCTGTTGTTTTACATCCTTCATATACTTTTTGTAATTTGGTATATACGGGAATTCACATCGAGGGATATCATGTTCTTGACTTACATGGTAAAGTTCTTGATTGATTGGCACCCTTTTTGTGAATTCATAATTCGCATATTTTAGATTTTCTACGGGTTTCTGAACTTTGTACTTTTATTATCTTCGTTTTTATATGTACCGATGGTTTTGAAAATTAGAAGGCTCACGAGTATTAGCTCTTCGAACCACCATGAAAACCTCAAGTACATTTTCTATCA</canonical>
            <polymorphic>CAATCAACGATCAATGATTTGATCAAATTCAAATCATTCAATAAACATGTGTGCTCAATTTCACCTGTTCTTTACATTGTCAAGAGTTACTTTCTATGAAACGTGCCCAGCAAAAAAAAAATCAGCAGATGATTTTGATCTTCGAGTACTCAAAACAACACAATTCTACCTCAAAAAGCTCAACGAGCAATTCTTAAAATCTTATTTCAGTAAGACCTCTCAAAAATGAACGATACAGAAACTTCTGATTCCATCGATTCATTTGGAATTTCGTCCGTTATTCTTATTTACTCTGTCGTCTCAATGTTTGCTCTTCTCATTCTGATTTTCCCATTCTACGTGGTTGTAATTAGAGCGAATCGGAAAAAAGACAAATTGCTAACTGTATACCCAATCATCAGTCATTTCTATAAGGCTATCCGTTTTTTCTATTCAATTCTTTTCATCTTTATAATATATGTGATTTATCGTTGCTACGCTTATCCTGATATAGGGTACCWTTTTTTTTAAGTTGTAAAGGTTCAAAAAACAATTACAGGTATATAGAAACTCTACAACTTACCTCAATAATTGGAACTCTTTCCCTTATGGCAATTTTCGTACAAGCTCATAATTTTTTAATTATTCTTTTGTCTTTTCAACGATTTTACATATTCTTTTATCAGAAAGAACGCTCTAGGAACACTGGAAAGTATATTGAGCTGAATGCTGTAAAGATTTATCTGTTGTTTTACATCCTTCATATACTTTTTGTAATTTGGTATATACGGGAATTCACATCGAGGGATATCATGTTCTTGACTTACATGGTAAAGTTCTTGATTGATTGGCACCCTTTTTGTGAATTCATAATTCGCATATTTTAGATTTTCTACGGGTTTCTGAACTTTGTACTTTTATTATCTTCGTTTTTATATGTACCGATGGTTTTGAAAATTAGAAGGCTCACGAGTATTAGCTCTTCGAACCACCATGAAAACCTCAAGTACATTTTCTATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTATAAGGCTATCCGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGTAAAATCGTTGAAAAGACAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTCTATAAGGCTATCCGTTTTTTCTATTCAATTCTTTTCATCTTTATAATATATGTGATTTATCGTTGCTACGCTTATCCTGATATAGGGTACCTTTTTTTTTAAGTTGTAAAGGTTCAAAAAACAATTACAGGTATATAGAAACTCTACAACTTACCTCAATAATTGGAACTCTTTCCCTTATGGCAATTTTCGTACAAGCTCATAATTTTTTAATTATTCTTTTGTCTTTTCAACGATTTTACAT</canonical_amplicon>
		<polymorphic_amplicon>TTTCTATAAGGCTATCCGTTTTTTCTATTCAATTCTTTTCATCTTTATAATATATGTGATTTATCGTTGCTACGCTTATCCTGATATAGGGTACCWTTTTTTTTAAGTTGTAAAGGTTCAAAAAACAATTACAGGTATATAGAAACTCTACAACTTACCTCAATAATTGGAACTCTTTCCCTTATGGCAATTTTCGTACAAGCTCATAATTTTTTAATTATTCTTTTGTCTTTTCAACGATTTTACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39460</snp_id>
        <super_contig>c013801131.Contig1</super_contig>
        <contig_pos>11740</contig_pos>
        <strand>+</strand>
        <context>AGGAACACTG[A/G]AAAGTATATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCAACGATTTTACATATTCTTTTATCAGAAAGAACGCTCTAGGAACACTG</left_flank>
        <right_flank>AAAGTATATTGAGCTGAATGCTGTAAAGATTTATCTGTTGTTTTACATCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCTTAAAATCTTATTTCAGTAAGACCTCTCAAAAATGAACGATACAGAAACTTCTGATTCCATCGATTCATTTGGAATTTCGTCCGTTATTCTTATTTACTCTGTCGTCTCAATGTTTGCTCTTCTCATTCTGATTTTCCCATTCTACGTGGTTGTAATTAGAGCGAATCGGAAAAAAGACAAATTGCTAACTGTATACCCAATCATCAGTCATTTCTATAAGGCTATCCGTTTTTTCTATTCAATTCTTTTCATCTTTATAATATATGTGATTTATCGTTGCTACGCTTATCCTGATATAGGGTACCTTTTTTTTTAAGTTGTAAAGGTTCAAAAAACAATTACAGGTATATAGAAACTCTACAACTTACCTCAATAATTGGAACTCTTTCCCTTATGGCAATTTTCGTACAAGCTCATAATTTTTTAATTATTCTTTTGTCTTTTCAACGATTTTACATATTCTTTTATCAGAAAGAACGCTCTAGGAACACTGGAAAGTATATTGAGCTGAATGCTGTAAAGATTTATCTGTTGTTTTACATCCTTCATATACTTTTTGTAATTTGGTATATACGGGAATTCACATCGAGGGATATCATGTTCTTGACTTACATGGTAAAGTTCTTGATTGATTGGCACCCTTTTTGTGAATTCATAATTCGCATATTTTAGATTTTCTACGGGTTTCTGAACTTTGTACTTTTATTATCTTCGTTTTTATATGTACCGATGGTTTTGAAAATTAGAAGGCTCACGAGTATTAGCTCTTCGAACCACCATGAAAACCTCAAGTACATTTTCTATCAAACGTTGACAATTGTTTTATTTAAACTGGTGAGTATTGGGACCTTTCAATACTTCAAATACGAAGCTTTTTCAGTCACATACCTGGGCGGTATGCTTTTTGGAAACTGGAAATTATACACTTGAAAACTATATTCTTCTTTTTTTATTCATGGATTTGATATCGACACCAAGTTTAATACAAGTTTCA</canonical>
            <polymorphic>AATTCTTAAAATCTTATTTCAGTAAGACCTCTCAAAAATGAACGATACAGAAACTTCTGATTCCATCGATTCATTTGGAATTTCGTCCGTTATTCTTATTTACTCTGTCGTCTCAATGTTTGCTCTTCTCATTCTGATTTTCCCATTCTACGTGGTTGTAATTAGAGCGAATCGGAAAAAAGACAAATTGCTAACTGTATACCCAATCATCAGTCATTTCTATAAGGCTATCCGTTTTTTCTATTCAATTCTTTTCATCTTTATAATATATGTGATTTATCGTTGCTACGCTTATCCTGATATAGGGTACCTTTTTTTTTAAGTTGTAAAGGTTCAAAAAACAATTACAGGTATATAGAAACTCTACAACTTACCTCAATAATTGGAACTCTTTCCCTTATGGCAATTTTCGTACAAGCTCATAATTTTTTAATTATTCTTTTGTCTTTTCAACGATTTTACATATTCTTTTATCAGAAAGAACGCTCTAGGAACACTGRAAAGTATATTGAGCTGAATGCTGTAAAGATTTATCTGTTGTTTTACATCCTTCATATACTTTTTGTAATTTGGTATATACGGGAATTCACATCGAGGGATATCATGTTCTTGACTTACATGGTAAAGTTCTTGATTGATTGGCACCCTTTTTGTGAATTCATAATTCGCATATTTTAGATTTTCTACGGGTTTCTGAACTTTGTACTTTTATTATCTTCGTTTTTATATGTACCGATGGTTTTGAAAATTAGAAGGCTCACGAGTATTAGCTCTTCGAACCACCATGAAAACCTCAAGTACATTTTCTATCAAACGTTGACAATTGTTTTATTTAAACTGGTGAGTATTGGGACCTTTCAATACTTCAAATACGAAGCTTTTTCAGTCACATACCTGGGCGGTATGCTTTTTGGAAACTGGAAATTATACACTTGAAAACTATATTCTTCTTTTTTTATTCATGGATTTGATATCGACACCAAGTTTAATACAAGTTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCTCAATAATTGGAACTCTTTC</pcr_primer_p1>
		<pcr_primer_p2>CCATGTAAGTCAAGAACATGATA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACCTCAATAATTGGAACTCTTTCCCTTATGGCAATTTTCGTACAAGCTCATAATTTTTTAATTATTCTTTTGTCTTTTCAACGATTTTACATATTCTTTTATCAGAAAGAACGCTCTAGGAACACTGGAAAGTATATTGAGCTGAATGCTGTAAAGATTTATCTGTTGTTTTACATCCTTCATATACTTTTTGTAATTTGGTATATACGGGAATTCACATCGAGGGATATCATGTTCTTGACTTACATGG</canonical_amplicon>
		<polymorphic_amplicon>ACCTCAATAATTGGAACTCTTTCCCTTATGGCAATTTTCGTACAAGCTCATAATTTTTTAATTATTCTTTTGTCTTTTCAACGATTTTACATATTCTTTTATCAGAAAGAACGCTCTAGGAACACTGRAAAGTATATTGAGCTGAATGCTGTAAAGATTTATCTGTTGTTTTACATCCTTCATATACTTTTTGTAATTTGGTATATACGGGAATTCACATCGAGGGATATCATGTTCTTGACTTACATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39461</snp_id>
        <super_contig>c013801131.Contig1</super_contig>
        <contig_pos>13423</contig_pos>
        <strand>+</strand>
        <context>TGAAATCACG[A/G]GCCGCCGCGG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGAAAATTAAGGAGTTACGGTACGTACTCAAGGCTGTATGAAATCACG</left_flank>
        <right_flank>GCCGCCGCGGCGCGACTAGCCTGAGCCGACCGCGGTCGGCCGAAAACATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACTGCTCCCTGACTGGAAATTAGCAGCAGATAATATAGTCCGTGTTCTGTAATATGAAATTGACACATTTCAATTTCATGGTCCTTCACAACCTGAAATAAAAATTTTCGTGTAGAACAGTGTGGAAACCGATGCAAGTGGAAAGATGACAAAAACAATGCATATAAAAGCCTGCAAAAAAGTATGACGCCTTATTTTATAAGTGTTATATACCTGATAAACAAGAATAAATGTGAAATTTCTTTGCATAACCAGAGTGTCTCTAGACACAATTTTCCGGGAATCAAACATCATCCAAAGGCAAGTTATGACACTACTTATTCCGGTAAGTGTGCATAAACCCCCAAAGATTACAGATAGGTAATACGGAATGTAAATTTCCCATTTTCTCGGATCCGCTATGAACATTTCCGGACAAAAGCATACGGTTTTGTTGAAGTACTGAAAAAATTGAAAATTAAGGAGTTACGGTACGTACTCAAGGCTGTATGAAATCACGAGCCGCCGCGGCGCGACTAGCCTGAGCCGACCGCGGTCGGCCGAAAACATTGAGTAACCTGATAAGCTTCCTGACGAAACCCAGTTGATTCCAATTCAATAGAAAGTGTGGGAAGGATTGAAACAGCTACAATGAGCATCATTAGATAACAGAAACGATATGCCCATTTTAGAATTTTCACAGGGAGCTCGAATTTTTTGGTGTATCTCAAATCGGACAAAGTGATGAGTTGATGTTTGAACAGACGTAAAATGGAGAACGCGACCACTGAAATTTGGTTTTTTGAAATTAAACAAGAGTAGAATAGCGTAATAGAGTCTACTGACATTCAAGTCTGTGGGGCTAGGACAAATGCTAAAAAGAAAAAGAAAAAGAAGATAAAAATAGACTAACAGAGCACGACATGTGTCATTAAAACCAGCGGAAGTGCAATATTCGCGTCCAGGTCGTCTAGGAAACCAGTCATGAAATATCCGGGAATCGGTGGCATCAGAATTGGGC</canonical>
            <polymorphic>ACTGCTCCCTGACTGGAAATTAGCAGCAGATAATATAGTCCGTGTTCTGTAATATGAAATTGACACATTTCAATTTCATGGTCCTTCACAACCTGAAATAAAAATTTTCGTGTAGAACAGTGTGGAAACCGATGCAAGTGGAAAGATGACAAAAACAATGCATATAAAAGCCTGCAAAAAAGTATGACGCCTTATTTTATAAGTGTTATATACCTGATAAACAAGAATAAATGTGAAATTTCTTTGCATAACCAGAGTGTCTCTAGACACAATTTTCCGGGAATCAAACATCATCCAAAGGCAAGTTATGACACTACTTATTCCGGTAAGTGTGCATAAACCCCCAAAGATTACAGATAGGTAATACGGAATGTAAATTTCCCATTTTCTCGGATCCGCTATGAACATTTCCGGACAAAAGCATACGGTTTTGTTGAAGTACTGAAAAAATTGAAAATTAAGGAGTTACGGTACGTACTCAAGGCTGTATGAAATCACGRGCCGCCGCGGCGCGACTAGCCTGAGCCGACCGCGGTCGGCCGAAAACATTGAGTAACCTGATAAGCTTCCTGACGAAACCCAGTTGATTCCAATTCAATAGAAAGTGTGGGAAGGATTGAAACAGCTACAATGAGCATCATTAGATAACAGAAACGATATGCCCATTTTAGAATTTTCACAGGGAGCTCGAATTTTTTGGTGTATCTCAAATCGGACAAAGTGATGAGTTGATGTTTGAACAGACGTAAAATGGAGAACGCGACCACTGAAATTTGGTTTTTTGAAATTAAACAAGAGTAGAATAGCGTAATAGAGTCTACTGACATTCAAGTCTGTGGGGCTAGGACAAATGCTAAAAAGAAAAAGAAAAAGAAGATAAAAATAGACTAACAGAGCACGACATGTGTCATTAAAACCAGCGGAAGTGCAATATTCGCGTCCAGGTCGTCTAGGAAACCAGTCATGAAATATCCGGGAATCGGTGGCATCAGAATTGGGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>314 170 159 155 61 60 26 18 17 14 6</canonical_bands>
                <polymorphic_bands>314 170 159 155 61 60 35 26 14 6</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>394 263 148 85 73 37</canonical_bands>
                <polymorphic_bands>394 263 158 148 37</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTCCGGTAAGTGTGCATAA</pcr_primer_p1>
		<pcr_primer_p2>GAAGCTTATCAGGTTACTCAATG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TATTCCGGTAAGTGTGCATAAACCCCCAAAGATTACAGATAGGTAATACGGAATGTAAATTTCCCATTTTCTCGGATCCGCTATGAACATTTCCGGACAAAAGCATACGGTTTTGTTGAAGTACTGAAAAAATTGAAAATTAAGGAGTTACGGTACGTACTCAAGGCTGTATGAAATCACGAGCCGCCGCGGCGCGACTAGCCTGAGCCGACCGCGGTCGGCCGAAAACATTGAGTAACCTGATAAGCTTC</canonical_amplicon>
		<polymorphic_amplicon>TATTCCGGTAAGTGTGCATAAACCCCCAAAGATTACAGATAGGTAATACGGAATGTAAATTTCCCATTTTCTCGGATCCGCTATGAACATTTCCGGACAAAAGCATACGGTTTTGTTGAAGTACTGAAAAAATTGAAAATTAAGGAGTTACGGTACGTACTCAAGGCTGTATGAAATCACGRGCCGCCGCGGCGCGACTAGCCTGAGCCGACCGCGGTCGGCCGAAAACATTGAGTAACCTGATAAGCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39462</snp_id>
        <super_contig>c013801131.Contig1</super_contig>
        <contig_pos>13441</contig_pos>
        <strand>+</strand>
        <context>CGGCGCGRCT[A/C]GCCTGAGCCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ACGGTACGTACTCAAGGCTGTATGAAATCACGAGCCGCCGCGGCGCGACT</left_flank>
        <right_flank>GCCTGAGCCGACCGCGGTCGGCCGAAAACATTGAGTAACCTGATAAGCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTAGCAGCAGATAATATAGTCCGTGTTCTGTAATATGAAATTGACACATTTCAATTTCATGGTCCTTCACAACCTGAAATAAAAATTTTCGTGTAGAACAGTGTGGAAACCGATGCAAGTGGAAAGATGACAAAAACAATGCATATAAAAGCCTGCAAAAAAGTATGACGCCTTATTTTATAAGTGTTATATACCTGATAAACAAGAATAAATGTGAAATTTCTTTGCATAACCAGAGTGTCTCTAGACACAATTTTCCGGGAATCAAACATCATCCAAAGGCAAGTTATGACACTACTTATTCCGGTAAGTGTGCATAAACCCCCAAAGATTACAGATAGGTAATACGGAATGTAAATTTCCCATTTTCTCGGATCCGCTATGAACATTTCCGGACAAAAGCATACGGTTTTGTTGAAGTACTGAAAAAATTGAAAATTAAGGAGTTACGGTACGTACTCAAGGCTGTATGAAATCACGAGCCGCCGCGGCGCGACTAGCCTGAGCCGACCGCGGTCGGCCGAAAACATTGAGTAACCTGATAAGCTTCCTGACGAAACCCAGTTGATTCCAATTCAATAGAAAGTGTGGGAAGGATTGAAACAGCTACAATGAGCATCATTAGATAACAGAAACGATATGCCCATTTTAGAATTTTCACAGGGAGCTCGAATTTTTTGGTGTATCTCAAATCGGACAAAGTGATGAGTTGATGTTTGAACAGACGTAAAATGGAGAACGCGACCACTGAAATTTGGTTTTTTGAAATTAAACAAGAGTAGAATAGCGTAATAGAGTCTACTGACATTCAAGTCTGTGGGGCTAGGACAAATGCTAAAAAGAAAAAGAAAAAGAAGATAAAAATAGACTAACAGAGCACGACATGTGTCATTAAAACCAGCGGAAGTGCAATATTCGCGTCCAGGTCGTCTAGGAAACCAGTCATGAAATATCCGGGAATCGGTGGCATCAGAATTGGGCAGATGATGTGACACAAGA</canonical>
            <polymorphic>ATTAGCAGCAGATAATATAGTCCGTGTTCTGTAATATGAAATTGACACATTTCAATTTCATGGTCCTTCACAACCTGAAATAAAAATTTTCGTGTAGAACAGTGTGGAAACCGATGCAAGTGGAAAGATGACAAAAACAATGCATATAAAAGCCTGCAAAAAAGTATGACGCCTTATTTTATAAGTGTTATATACCTGATAAACAAGAATAAATGTGAAATTTCTTTGCATAACCAGAGTGTCTCTAGACACAATTTTCCGGGAATCAAACATCATCCAAAGGCAAGTTATGACACTACTTATTCCGGTAAGTGTGCATAAACCCCCAAAGATTACAGATAGGTAATACGGAATGTAAATTTCCCATTTTCTCGGATCCGCTATGAACATTTCCGGACAAAAGCATACGGTTTTGTTGAAGTACTGAAAAAATTGAAAATTAAGGAGTTACGGTACGTACTCAAGGCTGTATGAAATCACGAGCCGCCGCGGCGCGACTMGCCTGAGCCGACCGCGGTCGGCCGAAAACATTGAGTAACCTGATAAGCTTCCTGACGAAACCCAGTTGATTCCAATTCAATAGAAAGTGTGGGAAGGATTGAAACAGCTACAATGAGCATCATTAGATAACAGAAACGATATGCCCATTTTAGAATTTTCACAGGGAGCTCGAATTTTTTGGTGTATCTCAAATCGGACAAAGTGATGAGTTGATGTTTGAACAGACGTAAAATGGAGAACGCGACCACTGAAATTTGGTTTTTTGAAATTAAACAAGAGTAGAATAGCGTAATAGAGTCTACTGACATTCAAGTCTGTGGGGCTAGGACAAATGCTAAAAAGAAAAAGAAAAAGAAGATAAAAATAGACTAACAGAGCACGACATGTGTCATTAAAACCAGCGGAAGTGCAATATTCGCGTCCAGGTCGTCTAGGAAACCAGTCATGAAATATCCGGGAATCGGTGGCATCAGAATTGGGCAGATGATGTGACACAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>326 253 245 108 68</canonical_bands>
                <polymorphic_bands>579 245 108 68</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>314 177 155 152 61 60 26 18 17 14 6</canonical_bands>
                <polymorphic_bands>314 177 155 152 61 60 26 24 17 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATACGGTTTTGTTGAAGTACTGA</pcr_primer_p1>
		<pcr_primer_p2>ATTCTAAAATGGGCATATCGT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATACGGTTTTGTTGAAGTACTGAAAAAATTGAAAATTAAGGAGTTACGGTACGTACTCAAGGCTGTATGAAATCACGAGCCGCCGCGGCGCGACTAGCCTGAGCCGACCGCGGTCGGCCGAAAACATTGAGTAACCTGATAAGCTTCCTGACGAAACCCAGTTGATTCCAATTCAATAGAAAGTGTGGGAAGGATTGAAACAGCTACAATGAGCATCATTAGATAACAGAAACGATATGCCCATTTTAGAAT</canonical_amplicon>
		<polymorphic_amplicon>ATACGGTTTTGTTGAAGTACTGAAAAAATTGAAAATTAAGGAGTTACGGTACGTACTCAAGGCTGTATGAAATCACGAGCCGCCGCGGCGCGACTMGCCTGAGCCGACCGCGGTCGGCCGAAAACATTGAGTAACCTGATAAGCTTCCTGACGAAACCCAGTTGATTCCAATTCAATAGAAAGTGTGGGAAGGATTGAAACAGCTACAATGAGCATCATTAGATAACAGAAACGATATGCCCATTTTAGAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39463</snp_id>
        <super_contig>c013801131.Contig1</super_contig>
        <contig_pos>13712</contig_pos>
        <strand>+</strand>
        <context>TTTTTGAAAT[A/T]AAAMAAGAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AACAGACGTAAAATGGAGAACGCGACCACTGAAATTTGGTTTTTTGAAAT</left_flank>
        <right_flank>AAACAAGAGTAGAATAGCGTAATAGAGTCTACTGACATTCAAGTCTGTGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCATCCAAAGGCAAGTTATGACACTACTTATTCCGGTAAGTGTGCATAAACCCCCAAAGATTACAGATAGGTAATACGGAATGTAAATTTCCCATTTTCTCGGATCCGCTATGAACATTTCCGGACAAAAGCATACGGTTTTGTTGAAGTACTGAAAAAATTGAAAATTAAGGAGTTACGGTACGTACTCAAGGCTGTATGAAATCACGAGCCGCCGCGGCGCGACTAGCCTGAGCCGACCGCGGTCGGCCGAAAACATTGAGTAACCTGATAAGCTTCCTGACGAAACCCAGTTGATTCCAATTCAATAGAAAGTGTGGGAAGGATTGAAACAGCTACAATGAGCATCATTAGATAACAGAAACGATATGCCCATTTTAGAATTTTCACAGGGAGCTCGAATTTTTTGGTGTATCTCAAATCGGACAAAGTGATGAGTTGATGTTTGAACAGACGTAAAATGGAGAACGCGACCACTGAAATTTGGTTTTTTGAAATTAAACAAGAGTAGAATAGCGTAATAGAGTCTACTGACATTCAAGTCTGTGGGGCTAGGACAAATGCTAAAAAGAAAAAGAAAAAGAAGATAAAAATAGACTAACAGAGCACGACATGTGTCATTAAAACCAGCGGAAGTGCAATATTCGCGTCCAGGTCGTCTAGGAAACCAGTCATGAAATATCCGGGAATCGGTGGCATCAGAATTGGGCAGATGATGTGACACAAGAGGACCACAGAGGAGAAGTTTCTGGAAATTCAAAAAAAATGTTGAAGAACGTGAGAGAGGAGATTTTTTAAAGTTGTTTTTTGAAAAACCTAGTAAAACTTGAATTTACAGAAAAATTAAAGTATGGGTAATTTGAAATTTCTGAAAATTCCAGAAACTGTTGTTTTTTCCTAACTTTATCTGTTGCATTTTTTTTTCATTTTTAACTTCAAATTCAATTTCTACCTGACATTTCCTGTCCGACTACCGTAAAACCTGTAATAGAAGAGCCG</canonical>
            <polymorphic>ATCATCCAAAGGCAAGTTATGACACTACTTATTCCGGTAAGTGTGCATAAACCCCCAAAGATTACAGATAGGTAATACGGAATGTAAATTTCCCATTTTCTCGGATCCGCTATGAACATTTCCGGACAAAAGCATACGGTTTTGTTGAAGTACTGAAAAAATTGAAAATTAAGGAGTTACGGTACGTACTCAAGGCTGTATGAAATCACGAGCCGCCGCGGCGCGACTAGCCTGAGCCGACCGCGGTCGGCCGAAAACATTGAGTAACCTGATAAGCTTCCTGACGAAACCCAGTTGATTCCAATTCAATAGAAAGTGTGGGAAGGATTGAAACAGCTACAATGAGCATCATTAGATAACAGAAACGATATGCCCATTTTAGAATTTTCACAGGGAGCTCGAATTTTTTGGTGTATCTCAAATCGGACAAAGTGATGAGTTGATGTTTGAACAGACGTAAAATGGAGAACGCGACCACTGAAATTTGGTTTTTTGAAATWAAACAAGAGTAGAATAGCGTAATAGAGTCTACTGACATTCAAGTCTGTGGGGCTAGGACAAATGCTAAAAAGAAAAAGAAAAAGAAGATAAAAATAGACTAACAGAGCACGACATGTGTCATTAAAACCAGCGGAAGTGCAATATTCGCGTCCAGGTCGTCTAGGAAACCAGTCATGAAATATCCGGGAATCGGTGGCATCAGAATTGGGCAGATGATGTGACACAAGAGGACCACAGAGGAGAAGTTTCTGGAAATTCAAAAAAAATGTTGAAGAACGTGAGAGAGGAGATTTTTTAAAGTTGTTTTTTGAAAAACCTAGTAAAACTTGAATTTACAGAAAAATTAAAGTATGGGTAATTTGAAATTTCTGAAAATTCCAGAAACTGTTGTTTTTTCCTAACTTTATCTGTTGCATTTTTTTTTCATTTTTAACTTCAAATTCAATTTCTACCTGACATTTCCTGTCCGACTACCGTAAAACCTGTAATAGAAGAGCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>330 174 169 123 86 69 49</canonical_bands>
                <polymorphic_bands>453 174 169 86 69 49</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>207 136 86 80 80 76 73 65 56 51 19 15 15 12 10 7 7 5</canonical_bands>
                <polymorphic_bands>222 136 86 80 80 76 73 65 56 51 19 15 12 10 7 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATGAGTTGATGTTTGAACAGA</pcr_primer_p1>
		<pcr_primer_p2>TATTTCATGACTGGTTTCCTAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATGAGTTGATGTTTGAACAGACGTAAAATGGAGAACGCGACCACTGAAATTTGGTTTTTTGAAATTAAACAAGAGTAGAATAGCGTAATAGAGTCTACTGACATTCAAGTCTGTGGGGCTAGGACAAATGCTAAAAAGAAAAAGAAAAAGAAGATAAAAATAGACTAACAGAGCACGACATGTGTCATTAAAACCAGCGGAAGTGCAATATTCGCGTCCAGGTCGTCTAGGAAACCAGTCATGAAATA</canonical_amplicon>
		<polymorphic_amplicon>GATGAGTTGATGTTTGAACAGACGTAAAATGGAGAACGCGACCACTGAAATTTGGTTTTTTGAAATWAAACAAGAGTAGAATAGCGTAATAGAGTCTACTGACATTCAAGTCTGTGGGGCTAGGACAAATGCTAAAAAGAAAAAGAAAAAGAAGATAAAAATAGACTAACAGAGCACGACATGTGTCATTAAAACCAGCGGAAGTGCAATATTCGCGTCCAGGTCGTCTAGGAAACCAGTCATGAAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39464</snp_id>
        <super_contig>c013801131.Contig1</super_contig>
        <contig_pos>27845</contig_pos>
        <strand>+</strand>
        <context>CGTTGCTAAA[C/T]TTTTTTTCAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATCCAGGTCAACGGACTTTTGATGACAGCTGGCTTGGGGCGTTGCTAAA</left_flank>
        <right_flank>TTTTTTTCACTTACGAAAACCTTAAAAATAGGGGATTAACCTTAAAGAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCATACAAAATATATGTAGTAATAATACTTCCGACGCACCCAGCGACAACTGTTATGGCTCCTGAAATAGATTCCTGGTACAAAAAACAATGATTATTAAACAAAACCTGCAGCAAAACTAAAATAGAGAGCAATGAGAACAATTGGAGCCAGAATGTACAATTGAGTATCCACGGCCAAGTACCAGGACACTCCATAGCAAGTTGTCATTTGATTCAAATCGTAGTTGTTGATGTACAGCAAGTTTCTCCACCAATTTGACTTACAAGCATTAGCTTCATGGTTCTGGGCATCTGAAATTAAAGCGACGTTCGAGGATACGGTATTAGACACCTACTCCACATCCACGCGTTATAGGGTCCTTGCACATAAGGACTATAGACTACAAAAAATCCGATGAACAGCATGTAAGGAGGCGTGAGACGGAGATAACGGTGTAGGTAGAATAGAATCCAGGTCAACGGACTTTTGATGACAGCTGGCTTGGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTTAAAAATAGGGGATTAACCTTAAAGAACAAGTAAGCCACTACAATTCCAGATAATAAGAAAAAAGTGTCAACGGAGAGGACGGCTTGAAGGAAGAGGTGATTCCAGATATGCTTACTCACAGAACTCAATGGGAGAAGGGCATCTGAATTAATGGGTGATTTTTTGTTACTCCAACTATTGGAGGACTTACCAGAAAACAAAAAGTACATGAGCGCGTGTCCAGCGACAACCCAGGACATGGAAAACGCGCGGATGCAGTCTAGGGACTTTATGAATCCAGGCTTTTGTTCCTTGACAGATAACACTTGGCCAGCGTTGGTCCAGAACGAGAAGGCAATGAGGATTTTGAGAGCTGAAAATGAGAAGATTCAGATTTTCGAAGGCTTAGGTTCGGTAGTAAATCTTTAATAAGGTCACAACTTCAAGCCAATTTTTCTCGTTACCTGTTGAAGATATTAGAAATTGGTCACCTAACAA</canonical>
            <polymorphic>CCATACAAAATATATGTAGTAATAATACTTCCGACGCACCCAGCGACAACTGTTATGGCTCCTGAAATAGATTCCTGGTACAAAAAACAATGATTATTAAACAAAACCTGCAGCAAAACTAAAATAGAGAGCAATGAGAACAATTGGAGCCAGAATGTACAATTGAGTATCCACGGCCAAGTACCAGGACACTCCATAGCAAGTTGTCATTTGATTCAAATCGTAGTTGTTGATGTACAGCAAGTTTCTCCACCAATTTGACTTACAAGCATTAGCTTCATGGTTCTGGGCATCTGAAATTAAAGCGACGTTCGAGGATACGGTATTAGACACCTACTCCACATCCACGCGTTATAGGGTCCTTGCACATAAGGACTATAGACTACAAAAAATCCGATGAACAGCATGTAAGGAGGCGTGAGACGGAGATAACGGTGTAGGTAGAATAGAATCCAGGTCAACGGACTTTTGATGACAGCTGGCTTGGGGCGTTGCTAAAYTTTTTTTCACTTACGAAAACCTTAAAAATAGGGGATTAACCTTAAAGAACAAGTAAGCCACTACAATTCCAGATAATAAGAAAAAAGTGTCAACGGAGAGGACGGCTTGAAGGAAGAGGTGATTCCAGATATGCTTACTCACAGAACTCAATGGGAGAAGGGCATCTGAATTAATGGGTGATTTTTTGTTACTCCAACTATTGGAGGACTTACCAGAAAACAAAAAGTACATGAGCGCGTGTCCAGCGACAACCCAGGACATGGAAAACGCGCGGATGCAGTCTAGGGACTTTATGAATCCAGGCTTTTGTTCCTTGACAGATAACACTTGGCCAGCGTTGGTCCAGAACGAGAAGGCAATGAGGATTTTGAGAGCTGAAAATGAGAAGATTCAGATTTTCGAAGGCTTAGGTTCGGTAGTAAATCTTTAATAAGGTCACAACTTCAAGCCAATTTTTCTCGTTACCTGTTGAAGATATTAGAAATTGGTCACCTAACAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>283 200 141 104 94 67 43 32 19 17</canonical_bands>
                <polymorphic_bands>283 267 141 104 94 43 32 19 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATACGGTATTAGACACCTACTCC</pcr_primer_p1>
		<pcr_primer_p2>TTGTAGTGGCTTACTTGTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATACGGTATTAGACACCTACTCCACATCCACGCGTTATAGGGTCCTTGCACATAAGGACTATAGACTACAAAAAATCCGATGAACAGCATGTAAGGAGGCGTGAGACGGAGATAACGGTGTAGGTAGAATAGAATCCAGGTCAACGGACTTTTGATGACAGCTGGCTTGGGGCGTTGCTAAATTTTTTTTCACTTACGAAAACCTTAAAAATAGGGGATTAACCTTAAAGAACAAGTAAGCCACTACAA</canonical_amplicon>
		<polymorphic_amplicon>GATACGGTATTAGACACCTACTCCACATCCACGCGTTATAGGGTCCTTGCACATAAGGACTATAGACTACAAAAAATCCGATGAACAGCATGTAAGGAGGCGTGAGACGGAGATAACGGTGTAGGTAGAATAGAATCCAGGTCAACGGACTTTTGATGACAGCTGGCTTGGGGCGTTGCTAAAYTTTTTTTCACTTACGAAAACCTTAAAAATAGGGGATTAACCTTAAAGAACAAGTAAGCCACTACAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39465</snp_id>
        <super_contig>c013801131.Contig1</super_contig>
        <contig_pos>88594</contig_pos>
        <strand></strand>
        <context>aaaaaatcta[A/G]rtcatgacct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATCTAGGTCATGACCTAGAAAAATCTAGGTCACGGCTCAAAAAAATCTA</left_flank>
        <right_flank>ATCATGACCTAAAAAATCTAGGCCATAACCTAAAAAATCTAGGTCATGAC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTTTATCTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGGGGGACGAAATCCCGCCTCGCTTATGTAGACCATCGGTCGTCAGCCGCCTTCGCGCCCCCGTAGCTCAGCCGGTAGTGGCGCTGTACCCCTGAGCTGCCTGTCATGGGTTCAACCCCTCATGGGGGTTCTCTATGCAAAATATCAGGAAAACTTTTTTTTTGATGTCTGGCCTCCTTTAAAATTCCTAACATTTTATCAGTTGACAACTTTTTGATATTTATTACAGGAACCGAGATAATCAATATCTTCTTTTTCAGCTCACAATGCCGTCTGGAGAGCGAATTCAATTCGGGTCCAACGTGAATTTCCTCTTCGAAACCGACTCTCTGCAGTTTGCCTCACCAGCTACAGTATCCCGAATGGGAATGATTTACATAAGGTTAGTGAAAATAAAAAAAAATCTAGGTCATGACCTAGAAAAATCTAGGTCACGGCTCAAAAAAATCTAAATCATGACCTAAAAAATCTAGGCCATAACCTAAAAAATCTAGGTCATGACCTAACAAAAAAATCTAGATCATGACCTAGAAAAATCTAGGTCACGGCCTGGAAAAATCTAGGTCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAATCTAGGCCATAACCTAAAAAATCTAGGTCATGACCTAACAAAAAATCTAGATCATGACCTAGAAAAATCTAGGTCATGACCTAAAGAAATCTAGGTCATGACCTAGAAAAATTCAGGTAGTGACCTAAAAAAATCTAGGTCATGGCCTAGAAAAATATGAAATCTAGGTCATGACCTAAAAAAATCTAGGTCGTGACCTAGATTTTTAAAAAAATTTCTCAATTTTTAGCGAAGAAGACGTGAAACCTCAAGGCATCGTTGCGAGTTGGCTCGCAAAGAATTCAGAAGACGTGCACGCTGAAACAGCCACGTGGCTTGAATCTCACTTCTGGAGATGTTTCAAATGGGTTC</canonical>
            <polymorphic>ATGTTTATCTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGGGGGACGAAATCCCGCCTCGCTTATGTAGACCATCGGTCGTCAGCCGCCTTCGCGCCCCCGTAGCTCAGCCGGTAGTGGCGCTGTACCCCTGAGCTGCCTGTCATGGGTTCAACCCCTCATGGGGGTTCTCTATGCAAAATATCAGGAAAACTTTTTTTTTGATGTCTGGCCTCCTTTAAAATTCCTAACATTTTATCAGTTGACAACTTTTTGATATTTATTACAGGAACCGAGATAATCAATATCTTCTTTTTCAGCTCACAATGCCGTCTGGAGAGCGAATTCAATTCGGGTCCAACGTGAATTTCCTCTTCGAAACCGACTCTCTGCAGTTTGCCTCACCAGCTACAGTATCCCGAATGGGAATGATTTACATAAGGTTAGTGAAAATAAAAAAAAATCTAGGTCATGACCTAGAAAAATCTAGGTCACGGCTCAAAAAAATCTARATCATGACCTAAAAAATCTAGGCCATAACCTAAAAAATCTAGGTCATGACCTAACAAAAAAATCTAGATCATGACCTAGAAAAATCTAGGTCACGGCCTGGAAAAATCTAGGTCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAATCTAGGCCATAACCTAAAAAATCTAGGTCATGACCTAACAAAAAATCTAGATCATGACCTAGAAAAATCTAGGTCATGACCTAAAGAAATCTAGGTCATGACCTAGAAAAATTCAGGTAGTGACCTAAAAAAATCTAGGTCATGGCCTAGAAAAATATGAAATCTAGGTCATGACCTAAAAAAATCTAGGTCGTGACCTAGATTTTTAAAAAAATTTCTCAATTTTTAGCGAAGAAGACGTGAAACCTCAAGGCATCGTTGCGAGTTGGCTCGCAAAGAATTCAGAAGACGTGCACGCTGAAACAGCCACGTGGCTTGAATCTCACTTCTGGAGATGTTTCAAATGGGTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCTACAGTATCCCGAATG</pcr_primer_p1>
		<pcr_primer_p2>TCTTCGCTAAAAATTGAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>491</pcr_amplicon_size>
		<canonical_amplicon>CAGCTACAGTATCCCGAATGGGAATGATTTACATAAGGTTAGTGAAAATAAAAAAAAATCTAGGTCATGACCTAGAAAAATCTAGGTCACGGCTCAAAAAAATCTAAATCATGACCTAAAAAATCTAGGCCATAACCTAAAAAATCTAGGTCATGACCTAACAAAAAAATCTAGATCATGACCTAGAAAAATCTAGGTCACGGCCTGGAAAAATCTAGGTCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAATCTAGGCCATAACCTAAAAAATCTAGGTCATGACCTAACAAAAAATCTAGATCATGACCTAGAAAAATCTAGGTCATGACCTAAAGAAATCTAGGTCATGACCTAGAAAAATTCAGGTAGTGACCTAAAAAAATCTAGGTCATGGCCTAGAAAAATATGAAATCTAGGTCATGACCTAAAAAAATCTAGGTCGTGACCTAGATTTTTAAAAAAATTTCTCAATTTTTAGCGAAGA</canonical_amplicon>
		<polymorphic_amplicon>CAGCTACAGTATCCCGAATGGGAATGATTTACATAAGGTTAGTGAAAATAAAAAAAAATCTAGGTCATGACCTAGAAAAATCTAGGTCACGGCTCAAAAAAATCTARATCATGACCTAAAAAATCTAGGCCATAACCTAAAAAATCTAGGTCATGACCTAACAAAAAAATCTAGATCATGACCTAGAAAAATCTAGGTCACGGCCTGGAAAAATCTAGGTCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAATCTAGGCCATAACCTAAAAAATCTAGGTCATGACCTAACAAAAAATCTAGATCATGACCTAGAAAAATCTAGGTCATGACCTAAAGAAATCTAGGTCATGACCTAGAAAAATTCAGGTAGTGACCTAAAAAAATCTAGGTCATGGCCTAGAAAAATATGAAATCTAGGTCATGACCTAAAAAAATCTAGGTCGTGACCTAGATTTTTAAAAAAATTTCTCAATTTTTAGCGAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39466</snp_id>
        <super_contig>c013801131.Contig1</super_contig>
        <contig_pos>88595</contig_pos>
        <strand></strand>
        <context>aaaaatctar[A/G]tcatgaccta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCTAGGTCATGACCTAGAAAAATCTAGGTCACGGCTCAAAAAAATCTAA</left_flank>
        <right_flank>TCATGACCTAAAAAATCTAGGCCATAACCTAAAAAATCTAGGTCATGACC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTATCTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGGGGGACGAAATCCCGCCTCGCTTATGTAGACCATCGGTCGTCAGCCGCCTTCGCGCCCCCGTAGCTCAGCCGGTAGTGGCGCTGTACCCCTGAGCTGCCTGTCATGGGTTCAACCCCTCATGGGGGTTCTCTATGCAAAATATCAGGAAAACTTTTTTTTTGATGTCTGGCCTCCTTTAAAATTCCTAACATTTTATCAGTTGACAACTTTTTGATATTTATTACAGGAACCGAGATAATCAATATCTTCTTTTTCAGCTCACAATGCCGTCTGGAGAGCGAATTCAATTCGGGTCCAACGTGAATTTCCTCTTCGAAACCGACTCTCTGCAGTTTGCCTCACCAGCTACAGTATCCCGAATGGGAATGATTTACATAAGGTTAGTGAAAATAAAAAAAAATCTAGGTCATGACCTAGAAAAATCTAGGTCACGGCTCAAAAAAATCTAAATCATGACCTAAAAAATCTAGGCCATAACCTAAAAAATCTAGGTCATGACCTAACAAAAAAATCTAGATCATGACCTAGAAAAATCTAGGTCACGGCCTGGAAAAATCTAGGTCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAATCTAGGCCATAACCTAAAAAATCTAGGTCATGACCTAACAAAAAATCTAGATCATGACCTAGAAAAATCTAGGTCATGACCTAAAGAAATCTAGGTCATGACCTAGAAAAATTCAGGTAGTGACCTAAAAAAATCTAGGTCATGGCCTAGAAAAATATGAAATCTAGGTCATGACCTAAAAAAATCTAGGTCGTGACCTAGATTTTTAAAAAAATTTCTCAATTTTTAGCGAAGAAGACGTGAAACCTCAAGGCATCGTTGCGAGTTGGCTCGCAAAGAATTCAGAAGACGTGCACGCTGAAACAGCCACGTGGCTTGAATCTCACTTCTGGAGATGTTTCAAATGGGTTCA</canonical>
            <polymorphic>TGTTTATCTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGGGGGACGAAATCCCGCCTCGCTTATGTAGACCATCGGTCGTCAGCCGCCTTCGCGCCCCCGTAGCTCAGCCGGTAGTGGCGCTGTACCCCTGAGCTGCCTGTCATGGGTTCAACCCCTCATGGGGGTTCTCTATGCAAAATATCAGGAAAACTTTTTTTTTGATGTCTGGCCTCCTTTAAAATTCCTAACATTTTATCAGTTGACAACTTTTTGATATTTATTACAGGAACCGAGATAATCAATATCTTCTTTTTCAGCTCACAATGCCGTCTGGAGAGCGAATTCAATTCGGGTCCAACGTGAATTTCCTCTTCGAAACCGACTCTCTGCAGTTTGCCTCACCAGCTACAGTATCCCGAATGGGAATGATTTACATAAGGTTAGTGAAAATAAAAAAAAATCTAGGTCATGACCTAGAAAAATCTAGGTCACGGCTCAAAAAAATCTAARTCATGACCTAAAAAATCTAGGCCATAACCTAAAAAATCTAGGTCATGACCTAACAAAAAAATCTAGATCATGACCTAGAAAAATCTAGGTCACGGCCTGGAAAAATCTAGGTCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAATCTAGGCCATAACCTAAAAAATCTAGGTCATGACCTAACAAAAAATCTAGATCATGACCTAGAAAAATCTAGGTCATGACCTAAAGAAATCTAGGTCATGACCTAGAAAAATTCAGGTAGTGACCTAAAAAAATCTAGGTCATGGCCTAGAAAAATATGAAATCTAGGTCATGACCTAAAAAAATCTAGGTCGTGACCTAGATTTTTAAAAAAATTTCTCAATTTTTAGCGAAGAAGACGTGAAACCTCAAGGCATCGTTGCGAGTTGGCTCGCAAAGAATTCAGAAGACGTGCACGCTGAAACAGCCACGTGGCTTGAATCTCACTTCTGGAGATGTTTCAAATGGGTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCTACAGTATCCCGAATG</pcr_primer_p1>
		<pcr_primer_p2>TCTTCGCTAAAAATTGAGAAAT</pcr_primer_p2>
		<pcr_amplicon_size>491</pcr_amplicon_size>
		<canonical_amplicon>CAGCTACAGTATCCCGAATGGGAATGATTTACATAAGGTTAGTGAAAATAAAAAAAAATCTAGGTCATGACCTAGAAAAATCTAGGTCACGGCTCAAAAAAATCTAAATCATGACCTAAAAAATCTAGGCCATAACCTAAAAAATCTAGGTCATGACCTAACAAAAAAATCTAGATCATGACCTAGAAAAATCTAGGTCACGGCCTGGAAAAATCTAGGTCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAATCTAGGCCATAACCTAAAAAATCTAGGTCATGACCTAACAAAAAATCTAGATCATGACCTAGAAAAATCTAGGTCATGACCTAAAGAAATCTAGGTCATGACCTAGAAAAATTCAGGTAGTGACCTAAAAAAATCTAGGTCATGGCCTAGAAAAATATGAAATCTAGGTCATGACCTAAAAAAATCTAGGTCGTGACCTAGATTTTTAAAAAAATTTCTCAATTTTTAGCGAAGA</canonical_amplicon>
		<polymorphic_amplicon>CAGCTACAGTATCCCGAATGGGAATGATTTACATAAGGTTAGTGAAAATAAAAAAAAATCTAGGTCATGACCTAGAAAAATCTAGGTCACGGCTCAAAAAAATCTAARTCATGACCTAAAAAATCTAGGCCATAACCTAAAAAATCTAGGTCATGACCTAACAAAAAAATCTAGATCATGACCTAGAAAAATCTAGGTCACGGCCTGGAAAAATCTAGGTCATGACCTAAAAAAATCTAGGTCATGACCTAAAAAATCTAGGCCATAACCTAAAAAATCTAGGTCATGACCTAACAAAAAATCTAGATCATGACCTAGAAAAATCTAGGTCATGACCTAAAGAAATCTAGGTCATGACCTAGAAAAATTCAGGTAGTGACCTAAAAAAATCTAGGTCATGGCCTAGAAAAATATGAAATCTAGGTCATGACCTAAAAAAATCTAGGTCGTGACCTAGATTTTTAAAAAAATTTCTCAATTTTTAGCGAAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39467</snp_id>
        <super_contig>c013801131.Contig1</super_contig>
        <contig_pos>90969</contig_pos>
        <strand>+</strand>
        <context>AGGATTCTTC[C/G]ATCACAATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ACGAACTCCTGGCACTTCTCCAACAACTTCTAACCTATCAAGGATTCTTC</left_flank>
        <right_flank>ATCACAATTTAGAATGGGTTTCAATCGAAAACATTCAATTCGTTGGGTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATACTAAACAGAAATAGAGCTTCATTTTTGTAATTGACAACTTTTTTGTGCAAACGCGCCCTAGCGAGATACGCCTGCGTTCCTAAGTATCCTCTTCCGCGCGCCGTCGAAGATGATAGCTACACTTTCACGTGGCATATCTCGTTAGGGCGCATTTGCACAAAAAGTTGTTAACTACAAAAATAAAGCACTATTTTTGTTTACTATACACTGAAATTTTCAGATAAATCGAAACATTCTGAAGTACTTTTGTAGCTGGCGCCGCAACCACTGACGCCGCCACCATCTAGCGATGGCTGTGCTGCGTAGCTCAGCTGGCAGCAACGCGGAACCTCCAACGGCGAGCTCACAAACTCAACTTTTTGAGGGGCTTATAGAACAAGTTTTTGAAAAAAAGTCTATTAAAATTCCATGTTCCTTTAATAAAAAAGTTTTCAGTACGGCACCAACGAACTCCTGGCACTTCTCCAACAACTTCTAACCTATCAAGGATTCTTCGATCACAATTTAGAATGGGTTTCAATCGAAAACATTCAATTCGTTGGGTCCATGAACCCACTCGGCGACGGTGCATCCACAAATATCTCCAATCGCCTCTTCTCCCTTCTTCGATGTATCTCTCTGAACAACACGGACACTCCCCAGCTGACTTCTATCTACCGTACCTATCTAACTCCAATTCTTGAAGACGTTGGAGAACGAAATTCAGAAACACTCGCTTCTCGAATGGTTGATGTCTATACCAAGGTTCAACAAAGCTTCAAACCCTCTGACAGTATCGTATTCCAATTTTCGCCCAGAGACCTTACCAATTGGGTAGTCTCACTTTTGAGACATGAGCTGGATCAAGGCAAACTGGAAGGAGTGATTTGTTTCGAGGGAAAACGAATATTTGCGGATCGACTGCCAACCGAAAACGATAAACAGAAATTTGAGGATATTCTGAGAAATGTGATTCCAGTGTCGCAAAGTGCAGGTGAGGATTCTACTCTAGAAGAA</canonical>
            <polymorphic>TATACTAAACAGAAATAGAGCTTCATTTTTGTAATTGACAACTTTTTTGTGCAAACGCGCCCTAGCGAGATACGCCTGCGTTCCTAAGTATCCTCTTCCGCGCGCCGTCGAAGATGATAGCTACACTTTCACGTGGCATATCTCGTTAGGGCGCATTTGCACAAAAAGTTGTTAACTACAAAAATAAAGCACTATTTTTGTTTACTATACACTGAAATTTTCAGATAAATCGAAACATTCTGAAGTACTTTTGTAGCTGGCGCCGCAACCACTGACGCCGCCACCATCTAGCGATGGCTGTGCTGCGTAGCTCAGCTGGCAGCAACGCGGAACCTCCAACGGCGAGCTCACAAACTCAACTTTTTGAGGGGCTTATAGAACAAGTTTTTGAAAAAAAGTCTATTAAAATTCCATGTTCCTTTAATAAAAAAGTTTTCAGTACGGCACCAACGAACTCCTGGCACTTCTCCAACAACTTCTAACCTATCAAGGATTCTTCSATCACAATTTAGAATGGGTTTCAATCGAAAACATTCAATTCGTTGGGTCCATGAACCCACTCGGCGACGGTGCATCCACAAATATCTCCAATCGCCTCTTCTCCCTTCTTCGATGTATCTCTCTGAACAACACGGACACTCCCCAGCTGACTTCTATCTACCGTACCTATCTAACTCCAATTCTTGAAGACGTTGGAGAACGAAATTCAGAAACACTCGCTTCTCGAATGGTTGATGTCTATACCAAGGTTCAACAAAGCTTCAAACCCTCTGACAGTATCGTATTCCAATTTTCGCCCAGAGACCTTACCAATTGGGTAGTCTCACTTTTGAGACATGAGCTGGATCAAGGCAAACTGGAAGGAGTGATTTGTTTCGAGGGAAAACGAATATTTGCGGATCGACTGCCAACCGAAAACGATAAACAGAAATTTGAGGATATTCTGAGAAATGTGATTCCAGTGTCGCAAAGTGCAGGTGAGGATTCTACTCTAGAAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>499 345 102 54</canonical_bands>
                <polymorphic_bands>844 102 54</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>268 152 122 114 109 98 85 27 25</canonical_bands>
                <polymorphic_bands>295 152 122 114 109 98 85 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGCTTATAGAACAAGTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>ATACATCGAAGAAGGGAGAAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GGGCTTATAGAACAAGTTTTTGAAAAAAAGTCTATTAAAATTCCATGTTCCTTTAATAAAAAAGTTTTCAGTACGGCACCAACGAACTCCTGGCACTTCTCCAACAACTTCTAACCTATCAAGGATTCTTCGATCACAATTTAGAATGGGTTTCAATCGAAAACATTCAATTCGTTGGGTCCATGAACCCACTCGGCGACGGTGCATCCACAAATATCTCCAATCGCCTCTTCTCCCTTCTTCGATGTAT</canonical_amplicon>
		<polymorphic_amplicon>GGGCTTATAGAACAAGTTTTTGAAAAAAAGTCTATTAAAATTCCATGTTCCTTTAATAAAAAAGTTTTCAGTACGGCACCAACGAACTCCTGGCACTTCTCCAACAACTTCTAACCTATCAAGGATTCTTCSATCACAATTTAGAATGGGTTTCAATCGAAAACATTCAATTCGTTGGGTCCATGAACCCACTCGGCGACGGTGCATCCACAAATATCTCCAATCGCCTCTTCTCCCTTCTTCGATGTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39468</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>48803</contig_pos>
        <strand>+</strand>
        <context>CGCAACTGGT[A/T]AGAGGAGTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTTCTCTGCTCCTCGGGCGCCGCGCGCCGTGTTTAGGTGGCGCAACTGGT</left_flank>
        <right_flank>AGAGGAGTTATTTTGGATTATATGGTTTATATGATTGTCCTTATTGCCGA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCTAAATTTCCAATTAATTCAGATTCATCCGATAGAAATGTTGAAGTAGTAGCCATCAAGCCAAAACCCAAGAAAATGAAGAAGCGGTAATTTTTTTTTCAATTTTTTCCACAAAAAAGGTTCCAAAAACAAACTTCCAGAGTCCGCAAGGCCAAGAAGCTCCGTCGTCGTCATTAGATTCTTGAATTTCTTCCTTTTTTAGATTTTTTCTTTCAACTTCCCCTACAGGTGCCATGTACATACCTAATAATTTCGCATTTTCTTAATAAGTCAGTATTAATTTTAATAAGTTTGATTTGATCAAAAATTTCCTCTTTTGCTCCGTTTTTAATAAAAGATTTCATCTTTTTTTCTATTTTACAGACAGGTTTTTTCCTATTTTCATGCAAAGATTCAAATTTTACGACTGGAAAAACCTATATACCACGGAAGGAATCGAACTTTCGGCTTCTCTGCTCCTCGGGCGCCGCGCGCCGTGTTTAGGTGGCGCAACTGGTAAGAGGAGTTATTTTGGATTATATGGTTTATATGATTGTCCTTATTGCCGACGAATATTGTCCTTTGATCCAGGAAGTTGAGTTGAGGTGGTGGTGGTCCATTTGTTGCTCGCCGTACTGAGGAAGCAGGTCTGCTCCCATCAGCGCCACGCGGGTTAGAGTCCGGTCTTGATCGCCAGGTGCACCATATTTTAGATTATATGGTTTATTGGGATATGAACACACACACAAAGATAAGATTCCCGGAGGGCTTATATAGTACAATAAAGTGGGAGGAGTTAACATTAAAGTGATGTGGAAAGATAAAGAAGAAAGGGGGAAAGTGAGTCATATGAAAAGCAATATCTGTAAGAGCACATTATTGCATTCTTACAGTTGCGGGGGATACAAAAGAGCAAAGAACAGTGACGTCACGTCCAAAATCGTTCTGAGCTTGAAGAATAACTACGAAGTAGTACTCGTTTCTCGAGTACAGGAGTGACTTTGGAGCAGAAAGGAGAA</canonical>
            <polymorphic>AATCTAAATTTCCAATTAATTCAGATTCATCCGATAGAAATGTTGAAGTAGTAGCCATCAAGCCAAAACCCAAGAAAATGAAGAAGCGGTAATTTTTTTTTCAATTTTTTCCACAAAAAAGGTTCCAAAAACAAACTTCCAGAGTCCGCAAGGCCAAGAAGCTCCGTCGTCGTCATTAGATTCTTGAATTTCTTCCTTTTTTAGATTTTTTCTTTCAACTTCCCCTACAGGTGCCATGTACATACCTAATAATTTCGCATTTTCTTAATAAGTCAGTATTAATTTTAATAAGTTTGATTTGATCAAAAATTTCCTCTTTTGCTCCGTTTTTAATAAAAGATTTCATCTTTTTTTCTATTTTACAGACAGGTTTTTTCCTATTTTCATGCAAAGATTCAAATTTTACGACTGGAAAAACCTATATACCACGGAAGGAATCGAACTTTCGGCTTCTCTGCTCCTCGGGCGCCGCGCGCCGTGTTTAGGTGGCGCAACTGGTWAGAGGAGTTATTTTGGATTATATGGTTTATATGATTGTCCTTATTGCCGACGAATATTGTCCTTTGATCCAGGAAGTTGAGTTGAGGTGGTGGTGGTCCATTTGTTGCTCGCCGTACTGAGGAAGCAGGTCTGCTCCCATCAGCGCCACGCGGGTTAGAGTCCGGTCTTGATCGCCAGGTGCACCATATTTTAGATTATATGGTTTATTGGGATATGAACACACACACAAAGATAAGATTCCCGGAGGGCTTATATAGTACAATAAAGTGGGAGGAGTTAACATTAAAGTGATGTGGAAAGATAAAGAAGAAAGGGGGAAAGTGAGTCATATGAAAAGCAATATCTGTAAGAGCACATTATTGCATTCTTACAGTTGCGGGGGATACAAAAGAGCAAAGAACAGTGACGTCACGTCCAAAATCGTTCTGAGCTTGAAGAATAACTACGAAGTAGTACTCGTTTCTCGAGTACAGGAGTGACTTTGGAGCAGAAAGGAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTTTTGCTCCGTTTTTAAT</pcr_primer_p1>
		<pcr_primer_p2>CAATATTCGTCGGCAATAAG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTCTTTTGCTCCGTTTTTAATAAAAGATTTCATCTTTTTTTCTATTTTACAGACAGGTTTTTTCCTATTTTCATGCAAAGATTCAAATTTTACGACTGGAAAAACCTATATACCACGGAAGGAATCGAACTTTCGGCTTCTCTGCTCCTCGGGCGCCGCGCGCCGTGTTTAGGTGGCGCAACTGGTAAGAGGAGTTATTTTGGATTATATGGTTTATATGATTGTCCTTATTGCCGACGAATATTG</canonical_amplicon>
		<polymorphic_amplicon>CTCTTTTGCTCCGTTTTTAATAAAAGATTTCATCTTTTTTTCTATTTTACAGACAGGTTTTTTCCTATTTTCATGCAAAGATTCAAATTTTACGACTGGAAAAACCTATATACCACGGAAGGAATCGAACTTTCGGCTTCTCTGCTCCTCGGGCGCCGCGCGCCGTGTTTAGGTGGCGCAACTGGTWAGAGGAGTTATTTTGGATTATATGGTTTATATGATTGTCCTTATTGCCGACGAATATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39469</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>50283</contig_pos>
        <strand></strand>
        <context>acaaaatgtt[G/A]atatctttat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAAAATATTTTTGATAATATGATAAACATTTTATTAGTTGACAAAATGTT</left_flank>
        <right_flank>ATATCTTTATTAGGAGCTGAGATAATTGAGCTCCAAACACAAATATCGGT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTAAAAGTTTCAATTTAGCTTTCTGCAGGTTAGGGACCGTTCATTCTTGTCTTATACTTTGAGCTCAATTATCTAAGTTCCTAGAAGAGGTACAAAAAATGTGTCAACTGATAAAATGTTAGTGATATTGTAATAAACATTTTATTAGTTGAAAAAATGTTGATAACTTTTACAGAAATTGATATAATTGAGCTTCAAAAAGAAATAACGGTAGATTCAAACTCAAGTATTTCTTGGCCTATTTTAAGATGTAAAAAATACAACGAATTGTTGTAATTAATGTTTTTTCATAGAACATTTTAAGATAAATTTAATGGCATAAAAATTAGAGCTCTAGCTAAAAAATAAAGTCTAAACAAAGTAGTGAATTACCGTAAATTCTCTACTTGAACTTTGAGCTCAATTATCTCGGCTCCTGGAAGACATATCAAAAATGTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTATTAGTTGACAAAATGTTGATATCTTTATTAGGAGCTGAGATAATTGAGCTCCAAACACAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAAATTATAGTAGTTTTGCAGATTTGAATGGTACTCAATTCAAAGCTCTCGCTTTAAGCCAGATTTTTTCCATTTTCTGAATGATACAGCTGAATTTTTTGATTTTTTCAAATGCAAAATTTTTCGCTGATTCCTAATGCTATCAAAACCAAACTCTAGCTTTAAACTAAGCGAGATATAGCAAATTTTCCATTTTTGCCACTCTGAGAATGCTTAAAATCCGATTTGCGGAAATAAAAATTTGAAATCGAATGTGACAAAAATTATTATTGTAGCTCAAAAATTTA</canonical>
            <polymorphic>ATTTTAAAAGTTTCAATTTAGCTTTCTGCAGGTTAGGGACCGTTCATTCTTGTCTTATACTTTGAGCTCAATTATCTAAGTTCCTAGAAGAGGTACAAAAAATGTGTCAACTGATAAAATGTTAGTGATATTGTAATAAACATTTTATTAGTTGAAAAAATGTTGATAACTTTTACAGAAATTGATATAATTGAGCTTCAAAAAGAAATAACGGTAGATTCAAACTCAAGTATTTCTTGGCCTATTTTAAGATGTAAAAAATACAACGAATTGTTGTAATTAATGTTTTTTCATAGAACATTTTAAGATAAATTTAATGGCATAAAAATTAGAGCTCTAGCTAAAAAATAAAGTCTAAACAAAGTAGTGAATTACCGTAAATTCTCTACTTGAACTTTGAGCTCAATTATCTCGGCTCCTGGAAGACATATCAAAAATGTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTATTAGTTGACAAAATGTTRATATCTTTATTAGGAGCTGAGATAATTGAGCTCCAAACACAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAAATTATAGTAGTTTTGCAGATTTGAATGGTACTCAATTCAAAGCTCTCGCTTTAAGCCAGATTTTTTCCATTTTCTGAATGATACAGCTGAATTTTTTGATTTTTTCAAATGCAAAATTTTTCGCTGATTCCTAATGCTATCAAAACCAAACTCTAGCTTTAAACTAAGCGAGATATAGCAAATTTTCCATTTTTGCCACTCTGAGAATGCTTAAAATCCGATTTGCGGAAATAAAAATTTGAAATCGAATGTGACAAAAATTATTATTGTAGCTCAAAAATTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATATC</site>
                <isoschizomers>
                    <enzyme>Eco32I</enzyme>
                    <enzyme>EcoRV</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAATTGTTGTAATTAATGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGCTTCGTTTTTAAGCTAGAG</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>CGAATTGTTGTAATTAATGTTTTTTCATAGAACATTTTAAGATAAATTTAATGGCATAAAAATTAGAGCTCTAGCTAAAAAATAAAGTCTAAACAAAGTAGTGAATTACCGTAAATTCTCTACTTGAACTTTGAGCTCAATTATCTCGGCTCCTGGAAGACATATCAAAAATGTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTATTAGTTGACAAAATGTTGATATCTTTATTAGGAGCTGAGATAATTGAGCTCCAAACACAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAA</canonical_amplicon>
		<polymorphic_amplicon>CGAATTGTTGTAATTAATGTTTTTTCATAGAACATTTTAAGATAAATTTAATGGCATAAAAATTAGAGCTCTAGCTAAAAAATAAAGTCTAAACAAAGTAGTGAATTACCGTAAATTCTCTACTTGAACTTTGAGCTCAATTATCTCGGCTCCTGGAAGACATATCAAAAATGTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTATTAGTTGACAAAATGTTRATATCTTTATTAGGAGCTGAGATAATTGAGCTCCAAACACAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39470</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>50310</contig_pos>
        <strand>+</strand>
        <context>ctgagataat[C/T]gagctccaaA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTATTAGTTGACAAAATGTTGATATCTTTATTAGGAGCTGAGATAAT</left_flank>
        <right_flank>GAGCTCCAAACACAAATATCGGTATATTCGATCACAAGTATTCCATGGCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCAGGTTAGGGACCGTTCATTCTTGTCTTATACTTTGAGCTCAATTATCTAAGTTCCTAGAAGAGGTACAAAAAATGTGTCAACTGATAAAATGTTAGTGATATTGTAATAAACATTTTATTAGTTGAAAAAATGTTGATAACTTTTACAGAAATTGATATAATTGAGCTTCAAAAAGAAATAACGGTAGATTCAAACTCAAGTATTTCTTGGCCTATTTTAAGATGTAAAAAATACAACGAATTGTTGTAATTAATGTTTTTTCATAGAACATTTTAAGATAAATTTAATGGCATAAAAATTAGAGCTCTAGCTAAAAAATAAAGTCTAAACAAAGTAGTGAATTACCGTAAATTCTCTACTTGAACTTTGAGCTCAATTATCTCGGCTCCTGGAAGACATATCAAAAATGTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTATTAGTTGACAAAATGTTGATATCTTTATTAGGAGCTGAGATAATTGAGCTCCAAACACAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAAATTATAGTAGTTTTGCAGATTTGAATGGTACTCAATTCAAAGCTCTCGCTTTAAGCCAGATTTTTTCCATTTTCTGAATGATACAGCTGAATTTTTTGATTTTTTCAAATGCAAAATTTTTCGCTGATTCCTAATGCTATCAAAACCAAACTCTAGCTTTAAACTAAGCGAGATATAGCAAATTTTCCATTTTTGCCACTCTGAGAATGCTTAAAATCCGATTTGCGGAAATAAAAATTTGAAATCGAATGTGACAAAAATTATTATTGTAGCTCAAAAATTTAAAAAGTTATGGTTGAAAATTCCCCTTC</canonical>
            <polymorphic>GCAGGTTAGGGACCGTTCATTCTTGTCTTATACTTTGAGCTCAATTATCTAAGTTCCTAGAAGAGGTACAAAAAATGTGTCAACTGATAAAATGTTAGTGATATTGTAATAAACATTTTATTAGTTGAAAAAATGTTGATAACTTTTACAGAAATTGATATAATTGAGCTTCAAAAAGAAATAACGGTAGATTCAAACTCAAGTATTTCTTGGCCTATTTTAAGATGTAAAAAATACAACGAATTGTTGTAATTAATGTTTTTTCATAGAACATTTTAAGATAAATTTAATGGCATAAAAATTAGAGCTCTAGCTAAAAAATAAAGTCTAAACAAAGTAGTGAATTACCGTAAATTCTCTACTTGAACTTTGAGCTCAATTATCTCGGCTCCTGGAAGACATATCAAAAATGTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTATTAGTTGACAAAATGTTGATATCTTTATTAGGAGCTGAGATAATYGAGCTCCAAACACAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAAATTATAGTAGTTTTGCAGATTTGAATGGTACTCAATTCAAAGCTCTCGCTTTAAGCCAGATTTTTTCCATTTTCTGAATGATACAGCTGAATTTTTTGATTTTTTCAAATGCAAAATTTTTCGCTGATTCCTAATGCTATCAAAACCAAACTCTAGCTTTAAACTAAGCGAGATATAGCAAATTTTCCATTTTTGCCACTCTGAGAATGCTTAAAATCCGATTTGCGGAAATAAAAATTTGAAATCGAATGTGACAAAAATTATTATTGTAGCTCAAAAATTTAAAAAGTTATGGTTGAAAATTCCCCTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>119 110 88 80 66 56 55 55 43 42 34 33 25 25 23 22 22 20 16 15 12 11 10 9 9</canonical_bands>
                <polymorphic_bands>207 110 80 66 56 55 55 43 42 34 33 25 25 23 22 22 20 16 15 12 11 10 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAATTGTTGTAATTAATGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGCTTCGTTTTTAAGCTAGAG</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>CGAATTGTTGTAATTAATGTTTTTTCATAGAACATTTTAAGATAAATTTAATGGCATAAAAATTAGAGCTCTAGCTAAAAAATAAAGTCTAAACAAAGTAGTGAATTACCGTAAATTCTCTACTTGAACTTTGAGCTCAATTATCTCGGCTCCTGGAAGACATATCAAAAATGTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTATTAGTTGACAAAATGTTGATATCTTTATTAGGAGCTGAGATAATTGAGCTCCAAACACAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAA</canonical_amplicon>
		<polymorphic_amplicon>CGAATTGTTGTAATTAATGTTTTTTCATAGAACATTTTAAGATAAATTTAATGGCATAAAAATTAGAGCTCTAGCTAAAAAATAAAGTCTAAACAAAGTAGTGAATTACCGTAAATTCTCTACTTGAACTTTGAGCTCAATTATCTCGGCTCCTGGAAGACATATCAAAAATGTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTATTAGTTGACAAAATGTTGATATCTTTATTAGGAGCTGAGATAATYGAGCTCCAAACACAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39471</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>50359</contig_pos>
        <strand></strand>
        <context>TATTCCATGG[C/T]CTATTTTAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGAGCTCCAAACACAAATATCGGTATATTCGATCACAAGTATTCCATGG</left_flank>
        <right_flank>CTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAGTTCCTAGAAGAGGTACAAAAAATGTGTCAACTGATAAAATGTTAGTGATATTGTAATAAACATTTTATTAGTTGAAAAAATGTTGATAACTTTTACAGAAATTGATATAATTGAGCTTCAAAAAGAAATAACGGTAGATTCAAACTCAAGTATTTCTTGGCCTATTTTAAGATGTAAAAAATACAACGAATTGTTGTAATTAATGTTTTTTCATAGAACATTTTAAGATAAATTTAATGGCATAAAAATTAGAGCTCTAGCTAAAAAATAAAGTCTAAACAAAGTAGTGAATTACCGTAAATTCTCTACTTGAACTTTGAGCTCAATTATCTCGGCTCCTGGAAGACATATCAAAAATGTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTATTAGTTGACAAAATGTTGATATCTTTATTAGGAGCTGAGATAATTGAGCTCCAAACACAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAAATTATAGTAGTTTTGCAGATTTGAATGGTACTCAATTCAAAGCTCTCGCTTTAAGCCAGATTTTTTCCATTTTCTGAATGATACAGCTGAATTTTTTGATTTTTTCAAATGCAAAATTTTTCGCTGATTCCTAATGCTATCAAAACCAAACTCTAGCTTTAAACTAAGCGAGATATAGCAAATTTTCCATTTTTGCCACTCTGAGAATGCTTAAAATCCGATTTGCGGAAATAAAAATTTGAAATCGAATGTGACAAAAATTATTATTGTAGCTCAAAAATTTAAAAAGTTATGGTTGAAAATTCCCCTTCCTTCTCAAATTTTTTTTTCCTCTATCATCTGAAAAAATCTCTGAAAAAT</canonical>
            <polymorphic>TAAGTTCCTAGAAGAGGTACAAAAAATGTGTCAACTGATAAAATGTTAGTGATATTGTAATAAACATTTTATTAGTTGAAAAAATGTTGATAACTTTTACAGAAATTGATATAATTGAGCTTCAAAAAGAAATAACGGTAGATTCAAACTCAAGTATTTCTTGGCCTATTTTAAGATGTAAAAAATACAACGAATTGTTGTAATTAATGTTTTTTCATAGAACATTTTAAGATAAATTTAATGGCATAAAAATTAGAGCTCTAGCTAAAAAATAAAGTCTAAACAAAGTAGTGAATTACCGTAAATTCTCTACTTGAACTTTGAGCTCAATTATCTCGGCTCCTGGAAGACATATCAAAAATGTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTATTAGTTGACAAAATGTTGATATCTTTATTAGGAGCTGAGATAATTGAGCTCCAAACACAAATATCGGTATATTCGATCACAAGTATTCCATGGYCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAAATTATAGTAGTTTTGCAGATTTGAATGGTACTCAATTCAAAGCTCTCGCTTTAAGCCAGATTTTTTCCATTTTCTGAATGATACAGCTGAATTTTTTGATTTTTTCAAATGCAAAATTTTTCGCTGATTCCTAATGCTATCAAAACCAAACTCTAGCTTTAAACTAAGCGAGATATAGCAAATTTTCCATTTTTGCCACTCTGAGAATGCTTAAAATCCGATTTGCGGAAATAAAAATTTGAAATCGAATGTGACAAAAATTATTATTGTAGCTCAAAAATTTAAAAAGTTATGGTTGAAAATTCCCCTTCCTTCTCAAATTTTTTTTTCCTCTATCATCTGAAAAAATCTCTGAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>378 335 164 123</canonical_bands>
                <polymorphic_bands>458 378 164</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>119 116 101 94 88 70 68 61 60 45 45 31 26 23 14 14 13 6 6</canonical_bands>
                <polymorphic_bands>119 116 113 101 94 88 70 61 60 45 31 26 23 14 14 13 6 6</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 335 164</canonical_bands>
                <polymorphic_bands>836 164</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGAATTGTTGTAATTAATGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>TTGCTTCGTTTTTAAGCTAGAG</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>CGAATTGTTGTAATTAATGTTTTTTCATAGAACATTTTAAGATAAATTTAATGGCATAAAAATTAGAGCTCTAGCTAAAAAATAAAGTCTAAACAAAGTAGTGAATTACCGTAAATTCTCTACTTGAACTTTGAGCTCAATTATCTCGGCTCCTGGAAGACATATCAAAAATGTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTATTAGTTGACAAAATGTTGATATCTTTATTAGGAGCTGAGATAATTGAGCTCCAAACACAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAA</canonical_amplicon>
		<polymorphic_amplicon>CGAATTGTTGTAATTAATGTTTTTTCATAGAACATTTTAAGATAAATTTAATGGCATAAAAATTAGAGCTCTAGCTAAAAAATAAAGTCTAAACAAAGTAGTGAATTACCGTAAATTCTCTACTTGAACTTTGAGCTCAATTATCTCGGCTCCTGGAAGACATATCAAAAATGTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTATTAGTTGACAAAATGTTGATATCTTTATTAGGAGCTGAGATAATTGAGCTCCAAACACAAATATCGGTATATTCGATCACAAGTATTCCATGGYCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39472</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>50377</contig_pos>
        <strand>+</strand>
        <context>AAGATGTAAA[A/G]AACGCATGGA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAA</left_flank>
        <right_flank>AACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGC</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAAAAAATGTGTCAACTGATAAAATGTTAGTGATATTGTAATAAACATTTTATTAGTTGAAAAAATGTTGATAACTTTTACAGAAATTGATATAATTGAGCTTCAAAAAGAAATAACGGTAGATTCAAACTCAAGTATTTCTTGGCCTATTTTAAGATGTAAAAAATACAACGAATTGTTGTAATTAATGTTTTTTCATAGAACATTTTAAGATAAATTTAATGGCATAAAAATTAGAGCTCTAGCTAAAAAATAAAGTCTAAACAAAGTAGTGAATTACCGTAAATTCTCTACTTGAACTTTGAGCTCAATTATCTCGGCTCCTGGAAGACATATCAAAAATGTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTATTAGTTGACAAAATGTTGATATCTTTATTAGGAGCTGAGATAATTGAGCTCCAAACACAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAAATTATAGTAGTTTTGCAGATTTGAATGGTACTCAATTCAAAGCTCTCGCTTTAAGCCAGATTTTTTCCATTTTCTGAATGATACAGCTGAATTTTTTGATTTTTTCAAATGCAAAATTTTTCGCTGATTCCTAATGCTATCAAAACCAAACTCTAGCTTTAAACTAAGCGAGATATAGCAAATTTTCCATTTTTGCCACTCTGAGAATGCTTAAAATCCGATTTGCGGAAATAAAAATTTGAAATCGAATGTGACAAAAATTATTATTGTAGCTCAAAAATTTAAAAAGTTATGGTTGAAAATTCCCCTTCCTTCTCAAATTTTTTTTTCCTCTATCATCTGAAAAAATCTCTGAAAAATTGGTCACCAGGTTTTCCA</canonical>
            <polymorphic>ACAAAAAATGTGTCAACTGATAAAATGTTAGTGATATTGTAATAAACATTTTATTAGTTGAAAAAATGTTGATAACTTTTACAGAAATTGATATAATTGAGCTTCAAAAAGAAATAACGGTAGATTCAAACTCAAGTATTTCTTGGCCTATTTTAAGATGTAAAAAATACAACGAATTGTTGTAATTAATGTTTTTTCATAGAACATTTTAAGATAAATTTAATGGCATAAAAATTAGAGCTCTAGCTAAAAAATAAAGTCTAAACAAAGTAGTGAATTACCGTAAATTCTCTACTTGAACTTTGAGCTCAATTATCTCGGCTCCTGGAAGACATATCAAAAATGTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTATTAGTTGACAAAATGTTGATATCTTTATTAGGAGCTGAGATAATTGAGCTCCAAACACAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAARAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAAATTATAGTAGTTTTGCAGATTTGAATGGTACTCAATTCAAAGCTCTCGCTTTAAGCCAGATTTTTTCCATTTTCTGAATGATACAGCTGAATTTTTTGATTTTTTCAAATGCAAAATTTTTCGCTGATTCCTAATGCTATCAAAACCAAACTCTAGCTTTAAACTAAGCGAGATATAGCAAATTTTCCATTTTTGCCACTCTGAGAATGCTTAAAATCCGATTTGCGGAAATAAAAATTTGAAATCGAATGTGACAAAAATTATTATTGTAGCTCAAAAATTTAAAAAGTTATGGTTGAAAATTCCCCTTCCTTCTCAAATTTTTTTTTCCTCTATCATCTGAAAAAATCTCTGAAAAATTGGTCACCAGGTTTTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAATATCGGTATATTCGATCAC</pcr_primer_p1>
		<pcr_primer_p2>AGAGCTTTGAATTGAGTACCAT</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>CAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAAATTATAGTAGTTTTGCAGATTTGAATGGTACTCAATTCAAAGCTCT</canonical_amplicon>
		<polymorphic_amplicon>CAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAARAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAAATTATAGTAGTTTTGCAGATTTGAATGGTACTCAATTCAAAGCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39473</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>50422</contig_pos>
        <strand>+</strand>
        <context>TAGAAAATTT[A/G]RAGGCTAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTT</left_flank>
        <right_flank>AAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGC</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACATTTTATTAGTTGAAAAAATGTTGATAACTTTTACAGAAATTGATATAATTGAGCTTCAAAAAGAAATAACGGTAGATTCAAACTCAAGTATTTCTTGGCCTATTTTAAGATGTAAAAAATACAACGAATTGTTGTAATTAATGTTTTTTCATAGAACATTTTAAGATAAATTTAATGGCATAAAAATTAGAGCTCTAGCTAAAAAATAAAGTCTAAACAAAGTAGTGAATTACCGTAAATTCTCTACTTGAACTTTGAGCTCAATTATCTCGGCTCCTGGAAGACATATCAAAAATGTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTATTAGTTGACAAAATGTTGATATCTTTATTAGGAGCTGAGATAATTGAGCTCCAAACACAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAAATTATAGTAGTTTTGCAGATTTGAATGGTACTCAATTCAAAGCTCTCGCTTTAAGCCAGATTTTTTCCATTTTCTGAATGATACAGCTGAATTTTTTGATTTTTTCAAATGCAAAATTTTTCGCTGATTCCTAATGCTATCAAAACCAAACTCTAGCTTTAAACTAAGCGAGATATAGCAAATTTTCCATTTTTGCCACTCTGAGAATGCTTAAAATCCGATTTGCGGAAATAAAAATTTGAAATCGAATGTGACAAAAATTATTATTGTAGCTCAAAAATTTAAAAAGTTATGGTTGAAAATTCCCCTTCCTTCTCAAATTTTTTTTTCCTCTATCATCTGAAAAAATCTCTGAAAAATTGGTCACCAGGTTTTCCAATTTCACCCAAAATTTTGAGATTTTATCGCACGGGTACCATAGTA</canonical>
            <polymorphic>ACATTTTATTAGTTGAAAAAATGTTGATAACTTTTACAGAAATTGATATAATTGAGCTTCAAAAAGAAATAACGGTAGATTCAAACTCAAGTATTTCTTGGCCTATTTTAAGATGTAAAAAATACAACGAATTGTTGTAATTAATGTTTTTTCATAGAACATTTTAAGATAAATTTAATGGCATAAAAATTAGAGCTCTAGCTAAAAAATAAAGTCTAAACAAAGTAGTGAATTACCGTAAATTCTCTACTTGAACTTTGAGCTCAATTATCTCGGCTCCTGGAAGACATATCAAAAATGTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTATTAGTTGACAAAATGTTGATATCTTTATTAGGAGCTGAGATAATTGAGCTCCAAACACAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTRAAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAAATTATAGTAGTTTTGCAGATTTGAATGGTACTCAATTCAAAGCTCTCGCTTTAAGCCAGATTTTTTCCATTTTCTGAATGATACAGCTGAATTTTTTGATTTTTTCAAATGCAAAATTTTTCGCTGATTCCTAATGCTATCAAAACCAAACTCTAGCTTTAAACTAAGCGAGATATAGCAAATTTTCCATTTTTGCCACTCTGAGAATGCTTAAAATCCGATTTGCGGAAATAAAAATTTGAAATCGAATGTGACAAAAATTATTATTGTAGCTCAAAAATTTAAAAAGTTATGGTTGAAAATTCCCCTTCCTTCTCAAATTTTTTTTTCCTCTATCATCTGAAAAAATCTCTGAAAAATTGGTCACCAGGTTTTCCAATTTCACCCAAAATTTTGAGATTTTATCGCACGGGTACCATAGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 211 140 123 27</canonical_bands>
                <polymorphic_bands>526 211 140 123</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>268 141 108 108 90 71 55 52 33 23 15 13 12 11</canonical_bands>
                <polymorphic_bands>268 141 108 108 90 71 67 52 33 23 15 13 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATATCGGTATATTCGATCAC</pcr_primer_p1>
		<pcr_primer_p2>AGAGCTTTGAATTGAGTACCAT</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>CAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAAATTATAGTAGTTTTGCAGATTTGAATGGTACTCAATTCAAAGCTCT</canonical_amplicon>
		<polymorphic_amplicon>CAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTRAAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAAATTATAGTAGTTTTGCAGATTTGAATGGTACTCAATTCAAAGCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39474</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>50423</contig_pos>
        <strand>+</strand>
        <context>AGAAAATTTR[A/G]AGGCTAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTA</left_flank>
        <right_flank>AGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTTTATTAGTTGAAAAAATGTTGATAACTTTTACAGAAATTGATATAATTGAGCTTCAAAAAGAAATAACGGTAGATTCAAACTCAAGTATTTCTTGGCCTATTTTAAGATGTAAAAAATACAACGAATTGTTGTAATTAATGTTTTTTCATAGAACATTTTAAGATAAATTTAATGGCATAAAAATTAGAGCTCTAGCTAAAAAATAAAGTCTAAACAAAGTAGTGAATTACCGTAAATTCTCTACTTGAACTTTGAGCTCAATTATCTCGGCTCCTGGAAGACATATCAAAAATGTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTATTAGTTGACAAAATGTTGATATCTTTATTAGGAGCTGAGATAATTGAGCTCCAAACACAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAAATTATAGTAGTTTTGCAGATTTGAATGGTACTCAATTCAAAGCTCTCGCTTTAAGCCAGATTTTTTCCATTTTCTGAATGATACAGCTGAATTTTTTGATTTTTTCAAATGCAAAATTTTTCGCTGATTCCTAATGCTATCAAAACCAAACTCTAGCTTTAAACTAAGCGAGATATAGCAAATTTTCCATTTTTGCCACTCTGAGAATGCTTAAAATCCGATTTGCGGAAATAAAAATTTGAAATCGAATGTGACAAAAATTATTATTGTAGCTCAAAAATTTAAAAAGTTATGGTTGAAAATTCCCCTTCCTTCTCAAATTTTTTTTTCCTCTATCATCTGAAAAAATCTCTGAAAAATTGGTCACCAGGTTTTCCAATTTCACCCAAAATTTTGAGATTTTATCGCACGGGTACCATAGTAC</canonical>
            <polymorphic>CATTTTATTAGTTGAAAAAATGTTGATAACTTTTACAGAAATTGATATAATTGAGCTTCAAAAAGAAATAACGGTAGATTCAAACTCAAGTATTTCTTGGCCTATTTTAAGATGTAAAAAATACAACGAATTGTTGTAATTAATGTTTTTTCATAGAACATTTTAAGATAAATTTAATGGCATAAAAATTAGAGCTCTAGCTAAAAAATAAAGTCTAAACAAAGTAGTGAATTACCGTAAATTCTCTACTTGAACTTTGAGCTCAATTATCTCGGCTCCTGGAAGACATATCAAAAATGTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTATTAGTTGACAAAATGTTGATATCTTTATTAGGAGCTGAGATAATTGAGCTCCAAACACAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTARAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAAATTATAGTAGTTTTGCAGATTTGAATGGTACTCAATTCAAAGCTCTCGCTTTAAGCCAGATTTTTTCCATTTTCTGAATGATACAGCTGAATTTTTTGATTTTTTCAAATGCAAAATTTTTCGCTGATTCCTAATGCTATCAAAACCAAACTCTAGCTTTAAACTAAGCGAGATATAGCAAATTTTCCATTTTTGCCACTCTGAGAATGCTTAAAATCCGATTTGCGGAAATAAAAATTTGAAATCGAATGTGACAAAAATTATTATTGTAGCTCAAAAATTTAAAAAGTTATGGTTGAAAATTCCCCTTCCTTCTCAAATTTTTTTTTCCTCTATCATCTGAAAAAATCTCTGAAAAATTGGTCACCAGGTTTTCCAATTTCACCCAAAATTTTGAGATTTTATCGCACGGGTACCATAGTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>498 211 141 123 27</canonical_bands>
                <polymorphic_bands>525 211 141 123</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>268 142 108 107 90 71 55 52 33 23 15 13 12 11</canonical_bands>
                <polymorphic_bands>268 142 108 107 90 71 67 52 33 23 15 13 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATATCGGTATATTCGATCAC</pcr_primer_p1>
		<pcr_primer_p2>AGAGCTTTGAATTGAGTACCAT</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>CAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAAATTATAGTAGTTTTGCAGATTTGAATGGTACTCAATTCAAAGCTCT</canonical_amplicon>
		<polymorphic_amplicon>CAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTARAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAAATTATAGTAGTTTTGCAGATTTGAATGGTACTCAATTCAAAGCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39475</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>50446</contig_pos>
        <strand>+</strand>
        <context>TGGTATAAAA[A/T]TTRAAGCTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAA</left_flank>
        <right_flank>TTAAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATG</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATAACTTTTACAGAAATTGATATAATTGAGCTTCAAAAAGAAATAACGGTAGATTCAAACTCAAGTATTTCTTGGCCTATTTTAAGATGTAAAAAATACAACGAATTGTTGTAATTAATGTTTTTTCATAGAACATTTTAAGATAAATTTAATGGCATAAAAATTAGAGCTCTAGCTAAAAAATAAAGTCTAAACAAAGTAGTGAATTACCGTAAATTCTCTACTTGAACTTTGAGCTCAATTATCTCGGCTCCTGGAAGACATATCAAAAATGTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTATTAGTTGACAAAATGTTGATATCTTTATTAGGAGCTGAGATAATTGAGCTCCAAACACAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAAATTATAGTAGTTTTGCAGATTTGAATGGTACTCAATTCAAAGCTCTCGCTTTAAGCCAGATTTTTTCCATTTTCTGAATGATACAGCTGAATTTTTTGATTTTTTCAAATGCAAAATTTTTCGCTGATTCCTAATGCTATCAAAACCAAACTCTAGCTTTAAACTAAGCGAGATATAGCAAATTTTCCATTTTTGCCACTCTGAGAATGCTTAAAATCCGATTTGCGGAAATAAAAATTTGAAATCGAATGTGACAAAAATTATTATTGTAGCTCAAAAATTTAAAAAGTTATGGTTGAAAATTCCCCTTCCTTCTCAAATTTTTTTTTCCTCTATCATCTGAAAAAATCTCTGAAAAATTGGTCACCAGGTTTTCCAATTTCACCCAAAATTTTGAGATTTTATCGCACGGGTACCATAGTACAAAATGACCAATCGAAATTTCTA</canonical>
            <polymorphic>TGATAACTTTTACAGAAATTGATATAATTGAGCTTCAAAAAGAAATAACGGTAGATTCAAACTCAAGTATTTCTTGGCCTATTTTAAGATGTAAAAAATACAACGAATTGTTGTAATTAATGTTTTTTCATAGAACATTTTAAGATAAATTTAATGGCATAAAAATTAGAGCTCTAGCTAAAAAATAAAGTCTAAACAAAGTAGTGAATTACCGTAAATTCTCTACTTGAACTTTGAGCTCAATTATCTCGGCTCCTGGAAGACATATCAAAAATGTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTATTAGTTGACAAAATGTTGATATCTTTATTAGGAGCTGAGATAATTGAGCTCCAAACACAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAAWTTAAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAAATTATAGTAGTTTTGCAGATTTGAATGGTACTCAATTCAAAGCTCTCGCTTTAAGCCAGATTTTTTCCATTTTCTGAATGATACAGCTGAATTTTTTGATTTTTTCAAATGCAAAATTTTTCGCTGATTCCTAATGCTATCAAAACCAAACTCTAGCTTTAAACTAAGCGAGATATAGCAAATTTTCCATTTTTGCCACTCTGAGAATGCTTAAAATCCGATTTGCGGAAATAAAAATTTGAAATCGAATGTGACAAAAATTATTATTGTAGCTCAAAAATTTAAAAAGTTATGGTTGAAAATTCCCCTTCCTTCTCAAATTTTTTTTTCCTCTATCATCTGAAAAAATCTCTGAAAAATTGGTCACCAGGTTTTCCAATTTCACCCAAAATTTTGAGATTTTATCGCACGGGTACCATAGTACAAAATGACCAATCGAAATTTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>232 147 145 71 69 66 55 50 43 27 25 22 22 18 8</canonical_bands>
                <polymorphic_bands>232 172 147 71 69 66 55 50 43 25 22 22 18 8</polymorphic_bands>
            </assay>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>475 211 164 123 27</canonical_bands>
                <polymorphic_bands>475 238 164 123</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>119 88 80 66 56 55 55 50 43 39 34 33 25 25 23 22 22 20 20 18 16 16 15 12 12 10 9 9 8</canonical_bands>
                <polymorphic_bands>119 88 80 70 66 56 55 50 43 39 34 33 25 25 23 22 22 20 20 18 16 16 12 12 10 9 9 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATATCGGTATATTCGATCAC</pcr_primer_p1>
		<pcr_primer_p2>AGAGCTTTGAATTGAGTACCAT</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>CAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAAATTATAGTAGTTTTGCAGATTTGAATGGTACTCAATTCAAAGCTCT</canonical_amplicon>
		<polymorphic_amplicon>CAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAAWTTAAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAAATTATAGTAGTTTTGCAGATTTGAATGGTACTCAATTCAAAGCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39476</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>50449</contig_pos>
        <strand>+</strand>
        <context>TATAAAAWTT[A/G]AAGCTCTAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTT</left_flank>
        <right_flank>AAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACTTTTACAGAAATTGATATAATTGAGCTTCAAAAAGAAATAACGGTAGATTCAAACTCAAGTATTTCTTGGCCTATTTTAAGATGTAAAAAATACAACGAATTGTTGTAATTAATGTTTTTTCATAGAACATTTTAAGATAAATTTAATGGCATAAAAATTAGAGCTCTAGCTAAAAAATAAAGTCTAAACAAAGTAGTGAATTACCGTAAATTCTCTACTTGAACTTTGAGCTCAATTATCTCGGCTCCTGGAAGACATATCAAAAATGTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTATTAGTTGACAAAATGTTGATATCTTTATTAGGAGCTGAGATAATTGAGCTCCAAACACAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAAATTATAGTAGTTTTGCAGATTTGAATGGTACTCAATTCAAAGCTCTCGCTTTAAGCCAGATTTTTTCCATTTTCTGAATGATACAGCTGAATTTTTTGATTTTTTCAAATGCAAAATTTTTCGCTGATTCCTAATGCTATCAAAACCAAACTCTAGCTTTAAACTAAGCGAGATATAGCAAATTTTCCATTTTTGCCACTCTGAGAATGCTTAAAATCCGATTTGCGGAAATAAAAATTTGAAATCGAATGTGACAAAAATTATTATTGTAGCTCAAAAATTTAAAAAGTTATGGTTGAAAATTCCCCTTCCTTCTCAAATTTTTTTTTCCTCTATCATCTGAAAAAATCTCTGAAAAATTGGTCACCAGGTTTTCCAATTTCACCCAAAATTTTGAGATTTTATCGCACGGGTACCATAGTACAAAATGACCAATCGAAATTTCTAGAA</canonical>
            <polymorphic>TAACTTTTACAGAAATTGATATAATTGAGCTTCAAAAAGAAATAACGGTAGATTCAAACTCAAGTATTTCTTGGCCTATTTTAAGATGTAAAAAATACAACGAATTGTTGTAATTAATGTTTTTTCATAGAACATTTTAAGATAAATTTAATGGCATAAAAATTAGAGCTCTAGCTAAAAAATAAAGTCTAAACAAAGTAGTGAATTACCGTAAATTCTCTACTTGAACTTTGAGCTCAATTATCTCGGCTCCTGGAAGACATATCAAAAATGTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTATTAGTTGACAAAATGTTGATATCTTTATTAGGAGCTGAGATAATTGAGCTCCAAACACAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTTRAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAAATTATAGTAGTTTTGCAGATTTGAATGGTACTCAATTCAAAGCTCTCGCTTTAAGCCAGATTTTTTCCATTTTCTGAATGATACAGCTGAATTTTTTGATTTTTTCAAATGCAAAATTTTTCGCTGATTCCTAATGCTATCAAAACCAAACTCTAGCTTTAAACTAAGCGAGATATAGCAAATTTTCCATTTTTGCCACTCTGAGAATGCTTAAAATCCGATTTGCGGAAATAAAAATTTGAAATCGAATGTGACAAAAATTATTATTGTAGCTCAAAAATTTAAAAAGTTATGGTTGAAAATTCCCCTTCCTTCTCAAATTTTTTTTTCCTCTATCATCTGAAAAAATCTCTGAAAAATTGGTCACCAGGTTTTCCAATTTCACCCAAAATTTTGAGATTTTATCGCACGGGTACCATAGTACAAAATGACCAATCGAAATTTCTAGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>472 211 167 123 27</canonical_bands>
                <polymorphic_bands>472 238 167 123</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>268 168 108 90 81 71 55 52 33 23 15 13 12 11</canonical_bands>
                <polymorphic_bands>268 168 108 90 81 71 55 52 33 28 23 12 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAATATCGGTATATTCGATCAC</pcr_primer_p1>
		<pcr_primer_p2>AGAGCTTTGAATTGAGTACCAT</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>CAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAAATTATAGTAGTTTTGCAGATTTGAATGGTACTCAATTCAAAGCTCT</canonical_amplicon>
		<polymorphic_amplicon>CAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTTRAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAAATTATAGTAGTTTTGCAGATTTGAATGGTACTCAATTCAAAGCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39477</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>50567</contig_pos>
        <strand>+</strand>
        <context>AGATTTTTTC[A/T]ATTTTCTGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATTTGAATGGTACTCAATTCAAAGCTCTCGCTTTAAGCCAGATTTTTTC</left_flank>
        <right_flank>ATTTTCTGAATGATACAGCTGAATTTTTTGATTTTTTCAAATGCAAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTTTCATAGAACATTTTAAGATAAATTTAATGGCATAAAAATTAGAGCTCTAGCTAAAAAATAAAGTCTAAACAAAGTAGTGAATTACCGTAAATTCTCTACTTGAACTTTGAGCTCAATTATCTCGGCTCCTGGAAGACATATCAAAAATGTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTATTAGTTGACAAAATGTTGATATCTTTATTAGGAGCTGAGATAATTGAGCTCCAAACACAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAAATTATAGTAGTTTTGCAGATTTGAATGGTACTCAATTCAAAGCTCTCGCTTTAAGCCAGATTTTTTCCATTTTCTGAATGATACAGCTGAATTTTTTGATTTTTTCAAATGCAAAATTTTTCGCTGATTCCTAATGCTATCAAAACCAAACTCTAGCTTTAAACTAAGCGAGATATAGCAAATTTTCCATTTTTGCCACTCTGAGAATGCTTAAAATCCGATTTGCGGAAATAAAAATTTGAAATCGAATGTGACAAAAATTATTATTGTAGCTCAAAAATTTAAAAAGTTATGGTTGAAAATTCCCCTTCCTTCTCAAATTTTTTTTTCCTCTATCATCTGAAAAAATCTCTGAAAAATTGGTCACCAGGTTTTCCAATTTCACCCAAAATTTTGAGATTTTATCGCACGGGTACCATAGTACAAAATGACCAATCGAAATTTCTAGAACAATCAAAATTCCGATGCGTTGGGTTCGCTGGAAGATGGTGCTGGTTTCGAGAAAATCGAGATGAAGGAACGACGGAATAGTGTGGAGAAGGAGGAGAAATGCGAGAAAAAAGTGGTG</canonical>
            <polymorphic>GTTTTTTCATAGAACATTTTAAGATAAATTTAATGGCATAAAAATTAGAGCTCTAGCTAAAAAATAAAGTCTAAACAAAGTAGTGAATTACCGTAAATTCTCTACTTGAACTTTGAGCTCAATTATCTCGGCTCCTGGAAGACATATCAAAAATGTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTATTAGTTGACAAAATGTTGATATCTTTATTAGGAGCTGAGATAATTGAGCTCCAAACACAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAAATTATAGTAGTTTTGCAGATTTGAATGGTACTCAATTCAAAGCTCTCGCTTTAAGCCAGATTTTTTCWATTTTCTGAATGATACAGCTGAATTTTTTGATTTTTTCAAATGCAAAATTTTTCGCTGATTCCTAATGCTATCAAAACCAAACTCTAGCTTTAAACTAAGCGAGATATAGCAAATTTTCCATTTTTGCCACTCTGAGAATGCTTAAAATCCGATTTGCGGAAATAAAAATTTGAAATCGAATGTGACAAAAATTATTATTGTAGCTCAAAAATTTAAAAAGTTATGGTTGAAAATTCCCCTTCCTTCTCAAATTTTTTTTTCCTCTATCATCTGAAAAAATCTCTGAAAAATTGGTCACCAGGTTTTCCAATTTCACCCAAAATTTTGAGATTTTATCGCACGGGTACCATAGTACAAAATGACCAATCGAAATTTCTAGAACAATCAAAATTCCGATGCGTTGGGTTCGCTGGAAGATGGTGCTGGTTTCGAGAAAATCGAGATGAAGGAACGACGGAATAGTGTGGAGAAGGAGGAGAAATGCGAGAAAAAAGTGGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGCAGATTTGAATGGTACTC</pcr_primer_p1>
		<pcr_primer_p2>TAATTTTTGTCACATTCGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTGCAGATTTGAATGGTACTCAATTCAAAGCTCTCGCTTTAAGCCAGATTTTTTCCATTTTCTGAATGATACAGCTGAATTTTTTGATTTTTTCAAATGCAAAATTTTTCGCTGATTCCTAATGCTATCAAAACCAAACTCTAGCTTTAAACTAAGCGAGATATAGCAAATTTTCCATTTTTGCCACTCTGAGAATGCTTAAAATCCGATTTGCGGAAATAAAAATTTGAAATCGAATGTGACAAAAATTA</canonical_amplicon>
		<polymorphic_amplicon>TTGCAGATTTGAATGGTACTCAATTCAAAGCTCTCGCTTTAAGCCAGATTTTTTCWATTTTCTGAATGATACAGCTGAATTTTTTGATTTTTTCAAATGCAAAATTTTTCGCTGATTCCTAATGCTATCAAAACCAAACTCTAGCTTTAAACTAAGCGAGATATAGCAAATTTTCCATTTTTGCCACTCTGAGAATGCTTAAAATCCGATTTGCGGAAATAAAAATTTGAAATCGAATGTGACAAAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39478</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>50583</contig_pos>
        <strand></strand>
        <context>CTGAATGATA[C/T]AGCTGYATTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTCAAAGCTCTCGCTTTAAGCCAGATTTTTTCCATTTTCTGAATGATA</left_flank>
        <right_flank>AGCTGAATTTTTTGATTTTTTCAAATGCAAAATTTTTCGCTGATTCCTAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTAAGATAAATTTAATGGCATAAAAATTAGAGCTCTAGCTAAAAAATAAAGTCTAAACAAAGTAGTGAATTACCGTAAATTCTCTACTTGAACTTTGAGCTCAATTATCTCGGCTCCTGGAAGACATATCAAAAATGTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTATTAGTTGACAAAATGTTGATATCTTTATTAGGAGCTGAGATAATTGAGCTCCAAACACAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAAATTATAGTAGTTTTGCAGATTTGAATGGTACTCAATTCAAAGCTCTCGCTTTAAGCCAGATTTTTTCCATTTTCTGAATGATACAGCTGAATTTTTTGATTTTTTCAAATGCAAAATTTTTCGCTGATTCCTAATGCTATCAAAACCAAACTCTAGCTTTAAACTAAGCGAGATATAGCAAATTTTCCATTTTTGCCACTCTGAGAATGCTTAAAATCCGATTTGCGGAAATAAAAATTTGAAATCGAATGTGACAAAAATTATTATTGTAGCTCAAAAATTTAAAAAGTTATGGTTGAAAATTCCCCTTCCTTCTCAAATTTTTTTTTCCTCTATCATCTGAAAAAATCTCTGAAAAATTGGTCACCAGGTTTTCCAATTTCACCCAAAATTTTGAGATTTTATCGCACGGGTACCATAGTACAAAATGACCAATCGAAATTTCTAGAACAATCAAAATTCCGATGCGTTGGGTTCGCTGGAAGATGGTGCTGGTTTCGAGAAAATCGAGATGAAGGAACGACGGAATAGTGTGGAGAAGGAGGAGAAATGCGAGAAAAAAGTGGTGCAAGTGGTGGAGACTG</canonical>
            <polymorphic>TTTTAAGATAAATTTAATGGCATAAAAATTAGAGCTCTAGCTAAAAAATAAAGTCTAAACAAAGTAGTGAATTACCGTAAATTCTCTACTTGAACTTTGAGCTCAATTATCTCGGCTCCTGGAAGACATATCAAAAATGTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTATTAGTTGACAAAATGTTGATATCTTTATTAGGAGCTGAGATAATTGAGCTCCAAACACAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAAATTATAGTAGTTTTGCAGATTTGAATGGTACTCAATTCAAAGCTCTCGCTTTAAGCCAGATTTTTTCCATTTTCTGAATGATAYAGCTGAATTTTTTGATTTTTTCAAATGCAAAATTTTTCGCTGATTCCTAATGCTATCAAAACCAAACTCTAGCTTTAAACTAAGCGAGATATAGCAAATTTTCCATTTTTGCCACTCTGAGAATGCTTAAAATCCGATTTGCGGAAATAAAAATTTGAAATCGAATGTGACAAAAATTATTATTGTAGCTCAAAAATTTAAAAAGTTATGGTTGAAAATTCCCCTTCCTTCTCAAATTTTTTTTTCCTCTATCATCTGAAAAAATCTCTGAAAAATTGGTCACCAGGTTTTCCAATTTCACCCAAAATTTTGAGATTTTATCGCACGGGTACCATAGTACAAAATGACCAATCGAAATTTCTAGAACAATCAAAATTCCGATGCGTTGGGTTCGCTGGAAGATGGTGCTGGTTTCGAGAAAATCGAGATGAAGGAACGACGGAATAGTGTGGAGAAGGAGGAGAAATGCGAGAAAAAAGTGGTGCAAGTGGTGGAGACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CMGCKG</site>
                <isoschizomers>
                    <enzyme>MspA1I</enzyme>
                    <enzyme>NspBII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAGCTG</site>
                <isoschizomers>
                    <enzyme>PvuII</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGCAGATTTGAATGGTACTC</pcr_primer_p1>
		<pcr_primer_p2>TAATTTTTGTCACATTCGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTGCAGATTTGAATGGTACTCAATTCAAAGCTCTCGCTTTAAGCCAGATTTTTTCCATTTTCTGAATGATACAGCTGAATTTTTTGATTTTTTCAAATGCAAAATTTTTCGCTGATTCCTAATGCTATCAAAACCAAACTCTAGCTTTAAACTAAGCGAGATATAGCAAATTTTCCATTTTTGCCACTCTGAGAATGCTTAAAATCCGATTTGCGGAAATAAAAATTTGAAATCGAATGTGACAAAAATTA</canonical_amplicon>
		<polymorphic_amplicon>TTGCAGATTTGAATGGTACTCAATTCAAAGCTCTCGCTTTAAGCCAGATTTTTTCCATTTTCTGAATGATAYAGCTGAATTTTTTGATTTTTTCAAATGCAAAATTTTTCGCTGATTCCTAATGCTATCAAAACCAAACTCTAGCTTTAAACTAAGCGAGATATAGCAAATTTTCCATTTTTGCCACTCTGAGAATGCTTAAAATCCGATTTGCGGAAATAAAAATTTGAAATCGAATGTGACAAAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39479</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>50589</contig_pos>
        <strand>+</strand>
        <context>GATAYAGCTG[C/T]ATTTTTTGAT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGCTCTCGCTTTAAGCCAGATTTTTTCCATTTTCTGAATGATACAGCTG</left_flank>
        <right_flank>ATTTTTTGATTTTTTCAAATGCAAAATTTTTCGCTGATTCCTAATGCTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATAAATTTAATGGCATAAAAATTAGAGCTCTAGCTAAAAAATAAAGTCTAAACAAAGTAGTGAATTACCGTAAATTCTCTACTTGAACTTTGAGCTCAATTATCTCGGCTCCTGGAAGACATATCAAAAATGTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTATTAGTTGACAAAATGTTGATATCTTTATTAGGAGCTGAGATAATTGAGCTCCAAACACAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAAATTATAGTAGTTTTGCAGATTTGAATGGTACTCAATTCAAAGCTCTCGCTTTAAGCCAGATTTTTTCCATTTTCTGAATGATACAGCTGAATTTTTTGATTTTTTCAAATGCAAAATTTTTCGCTGATTCCTAATGCTATCAAAACCAAACTCTAGCTTTAAACTAAGCGAGATATAGCAAATTTTCCATTTTTGCCACTCTGAGAATGCTTAAAATCCGATTTGCGGAAATAAAAATTTGAAATCGAATGTGACAAAAATTATTATTGTAGCTCAAAAATTTAAAAAGTTATGGTTGAAAATTCCCCTTCCTTCTCAAATTTTTTTTTCCTCTATCATCTGAAAAAATCTCTGAAAAATTGGTCACCAGGTTTTCCAATTTCACCCAAAATTTTGAGATTTTATCGCACGGGTACCATAGTACAAAATGACCAATCGAAATTTCTAGAACAATCAAAATTCCGATGCGTTGGGTTCGCTGGAAGATGGTGCTGGTTTCGAGAAAATCGAGATGAAGGAACGACGGAATAGTGTGGAGAAGGAGGAGAAATGCGAGAAAAAAGTGGTGCAAGTGGTGGAGACTGTGAGTG</canonical>
            <polymorphic>GATAAATTTAATGGCATAAAAATTAGAGCTCTAGCTAAAAAATAAAGTCTAAACAAAGTAGTGAATTACCGTAAATTCTCTACTTGAACTTTGAGCTCAATTATCTCGGCTCCTGGAAGACATATCAAAAATGTGTCAACTGATAAAATATTTTTGATAATATGATAAACATTTTATTAGTTGACAAAATGTTGATATCTTTATTAGGAGCTGAGATAATTGAGCTCCAAACACAAATATCGGTATATTCGATCACAAGTATTCCATGGCCTATTTTAAGATGTAAAGAACGCATGGATTTTTTGAATTTTATATTTCCTAATAGAAAATTTAAAGGCTAATTTAATGGTATAAAATTTAAAGCTCTAGCTTAAAAACGAAGCAAGATATGGCCGATTTTCTAAATGTAAATTATAGTAGTTTTGCAGATTTGAATGGTACTCAATTCAAAGCTCTCGCTTTAAGCCAGATTTTTTCCATTTTCTGAATGATACAGCTGYATTTTTTGATTTTTTCAAATGCAAAATTTTTCGCTGATTCCTAATGCTATCAAAACCAAACTCTAGCTTTAAACTAAGCGAGATATAGCAAATTTTCCATTTTTGCCACTCTGAGAATGCTTAAAATCCGATTTGCGGAAATAAAAATTTGAAATCGAATGTGACAAAAATTATTATTGTAGCTCAAAAATTTAAAAAGTTATGGTTGAAAATTCCCCTTCCTTCTCAAATTTTTTTTTCCTCTATCATCTGAAAAAATCTCTGAAAAATTGGTCACCAGGTTTTCCAATTTCACCCAAAATTTTGAGATTTTATCGCACGGGTACCATAGTACAAAATGACCAATCGAAATTTCTAGAACAATCAAAATTCCGATGCGTTGGGTTCGCTGGAAGATGGTGCTGGTTTCGAGAAAATCGAGATGAAGGAACGACGGAATAGTGTGGAGAAGGAGGAGAAATGCGAGAAAAAAGTGGTGCAAGTGGTGGAGACTGTGAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>232 145 133 71 69 66 55 50 43 27 25 22 22 18 18 4</canonical_bands>
                <polymorphic_bands>232 170 133 71 69 66 55 50 43 27 22 22 18 18 4</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>133 119 88 66 56 55 55 50 43 39 34 25 25 23 22 22 20 20 18 18 16 15 12 12 10 4</canonical_bands>
                <polymorphic_bands>133 119 88 81 66 55 55 50 43 39 34 25 23 22 22 20 20 18 18 16 15 12 12 10 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGCAGATTTGAATGGTACTC</pcr_primer_p1>
		<pcr_primer_p2>TAATTTTTGTCACATTCGATTTC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TTGCAGATTTGAATGGTACTCAATTCAAAGCTCTCGCTTTAAGCCAGATTTTTTCCATTTTCTGAATGATACAGCTGAATTTTTTGATTTTTTCAAATGCAAAATTTTTCGCTGATTCCTAATGCTATCAAAACCAAACTCTAGCTTTAAACTAAGCGAGATATAGCAAATTTTCCATTTTTGCCACTCTGAGAATGCTTAAAATCCGATTTGCGGAAATAAAAATTTGAAATCGAATGTGACAAAAATTA</canonical_amplicon>
		<polymorphic_amplicon>TTGCAGATTTGAATGGTACTCAATTCAAAGCTCTCGCTTTAAGCCAGATTTTTTCCATTTTCTGAATGATACAGCTGYATTTTTTGATTTTTTCAAATGCAAAATTTTTCGCTGATTCCTAATGCTATCAAAACCAAACTCTAGCTTTAAACTAAGCGAGATATAGCAAATTTTCCATTTTTGCCACTCTGAGAATGCTTAAAATCCGATTTGCGGAAATAAAAATTTGAAATCGAATGTGACAAAAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39480</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>61031</contig_pos>
        <strand></strand>
        <context>AAATTGTTGA[A/T]AAAGGAAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGAATCTAATTCTGAAATATCTAAACACCTTAAAATTCGAAATTGTTGA</left_flank>
        <right_flank>AAAGGAAGTTCTGAAAAATAGTTTTTTTGACTCTAAATTCCTCATTTTTC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTAAAATTCAAATTTTATTGCATTTTTCAAATCTGAAATTTCAAAAATTTAAAAATTATCAAAATCAAAAAAAGTCCAAAAATCCAAATTTTTTAAAAATTCTAATAATTCTGGAAATTCTAGAAAAGCAAAGTTGGAAATATTGGAAATTTTGAAGAATTCAAATATATCTGAAATTCCCAAAATTTTCGAAAATTCTGAAAATTCTAAAAATCTGAAACTGTGAAATTCGAAAAATCCACAATTTTCTAAAATTCTCAAAAATCGTAAATTACCTGGAATTCAAAATTTTCTTCTAAAATATTGAAATTCCAAAATTTCTAAAAATTCAAAACACCGTAAAATTTGACAAGTCTGAAAATCTGAAAATTCTCAAAAATCCGAAATTATCGGAAATTCTGAAAATTATCCAAAAAAAATTATTGACCTTTCGAAATTCTGGAAATTCTGAATCTAATTCTGAAATATCTAAACACCTTAAAATTCGAAATTGTTGAAAAAGGAAGTTCTGAAAAATAGTTTTTTTGACTCTAAATTCCTCATTTTTCGTCATTTTCAGCCAATTTTAAGCTCCTAAAATCTCTAATTTTTCAGTATGAAACTCCTCTGGGCTCCCATCGTCGATTCAGTTTATTCGAAACGTTTGGGTCGCCGGAAATCCTGGATGGTGCCTTGTCAGTATTTAATTGGAGCATTTATGCTCTATTTATCATTCAAAGTTAATGATATCATGGGAGAAAATGGTGGATCCCCCAACGTCGTCTTCCTAATGCTCATCTTTTTACCATTGAACTTTTTGGCTGCCACTCAGGATATTGCCGTGGATGGATGGGCGTTGACTATGCTTTCCAAGTGAGTTTTTTGGGTTGAAAAATCAGAAATTCAGAAATTTTGAATACCGTAAAACCTGTATTAGAAGGGCCCCTTCACAAATAGAACTCGAAAATCCCCCAATTCTCGGTTCCTGGACGTTTTAGAGCCCGACGTTTCAGAACTTT</canonical>
            <polymorphic>ATCTAAAATTCAAATTTTATTGCATTTTTCAAATCTGAAATTTCAAAAATTTAAAAATTATCAAAATCAAAAAAAGTCCAAAAATCCAAATTTTTTAAAAATTCTAATAATTCTGGAAATTCTAGAAAAGCAAAGTTGGAAATATTGGAAATTTTGAAGAATTCAAATATATCTGAAATTCCCAAAATTTTCGAAAATTCTGAAAATTCTAAAAATCTGAAACTGTGAAATTCGAAAAATCCACAATTTTCTAAAATTCTCAAAAATCGTAAATTACCTGGAATTCAAAATTTTCTTCTAAAATATTGAAATTCCAAAATTTCTAAAAATTCAAAACACCGTAAAATTTGACAAGTCTGAAAATCTGAAAATTCTCAAAAATCCGAAATTATCGGAAATTCTGAAAATTATCCAAAAAAAATTATTGACCTTTCGAAATTCTGGAAATTCTGAATCTAATTCTGAAATATCTAAACACCTTAAAATTCGAAATTGTTGAWAAAGGAAGTTCTGAAAAATAGTTTTTTTGACTCTAAATTCCTCATTTTTCGTCATTTTCAGCCAATTTTAAGCTCCTAAAATCTCTAATTTTTCAGTATGAAACTCCTCTGGGCTCCCATCGTCGATTCAGTTTATTCGAAACGTTTGGGTCGCCGGAAATCCTGGATGGTGCCTTGTCAGTATTTAATTGGAGCATTTATGCTCTATTTATCATTCAAAGTTAATGATATCATGGGAGAAAATGGTGGATCCCCCAACGTCGTCTTCCTAATGCTCATCTTTTTACCATTGAACTTTTTGGCTGCCACTCAGGATATTGCCGTGGATGGATGGGCGTTGACTATGCTTTCCAAGTGAGTTTTTTGGGTTGAAAAATCAGAAATTCAGAAATTTTGAATACCGTAAAACCTGTATTAGAAGGGCCCCTTCACAAATAGAACTCGAAAATCCCCCAATTCTCGGTTCCTGGACGTTTTAGAGCCCGACGTTTCAGAACTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAAAAATTCAAAACACCGTAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTAAAATTGGCTGAAAATGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAAAAATTCAAAACACCGTAAAATTTGACAAGTCTGAAAATCTGAAAATTCTCAAAAATCCGAAATTATCGGAAATTCTGAAAATTATCCAAAAAAAATTATTGACCTTTCGAAATTCTGGAAATTCTGAATCTAATTCTGAAATATCTAAACACCTTAAAATTCGAAATTGTTGAAAAAGGAAGTTCTGAAAAATAGTTTTTTTGACTCTAAATTCCTCATTTTTCGTCATTTTCAGCCAATTTTAAG</canonical_amplicon>
		<polymorphic_amplicon>CTAAAAATTCAAAACACCGTAAAATTTGACAAGTCTGAAAATCTGAAAATTCTCAAAAATCCGAAATTATCGGAAATTCTGAAAATTATCCAAAAAAAATTATTGACCTTTCGAAATTCTGGAAATTCTGAATCTAATTCTGAAATATCTAAACACCTTAAAATTCGAAATTGTTGAWAAAGGAAGTTCTGAAAAATAGTTTTTTTGACTCTAAATTCCTCATTTTTCGTCATTTTCAGCCAATTTTAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39481</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>61074</contig_pos>
        <strand>+</strand>
        <context>CTAAATTCCT[A/C]ATTTTTCGTC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGTTGAAAAAGGAAGTTCTGAAAAATAGTTTTTTTGACTCTAAATTCCT</left_flank>
        <right_flank>ATTTTTCGTCATTTTCAGCCAATTTTAAGCTCCTAAAATCTCTAATTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAATTTAAAAATTATCAAAATCAAAAAAAGTCCAAAAATCCAAATTTTTTAAAAATTCTAATAATTCTGGAAATTCTAGAAAAGCAAAGTTGGAAATATTGGAAATTTTGAAGAATTCAAATATATCTGAAATTCCCAAAATTTTCGAAAATTCTGAAAATTCTAAAAATCTGAAACTGTGAAATTCGAAAAATCCACAATTTTCTAAAATTCTCAAAAATCGTAAATTACCTGGAATTCAAAATTTTCTTCTAAAATATTGAAATTCCAAAATTTCTAAAAATTCAAAACACCGTAAAATTTGACAAGTCTGAAAATCTGAAAATTCTCAAAAATCCGAAATTATCGGAAATTCTGAAAATTATCCAAAAAAAATTATTGACCTTTCGAAATTCTGGAAATTCTGAATCTAATTCTGAAATATCTAAACACCTTAAAATTCGAAATTGTTGAAAAAGGAAGTTCTGAAAAATAGTTTTTTTGACTCTAAATTCCTCATTTTTCGTCATTTTCAGCCAATTTTAAGCTCCTAAAATCTCTAATTTTTCAGTATGAAACTCCTCTGGGCTCCCATCGTCGATTCAGTTTATTCGAAACGTTTGGGTCGCCGGAAATCCTGGATGGTGCCTTGTCAGTATTTAATTGGAGCATTTATGCTCTATTTATCATTCAAAGTTAATGATATCATGGGAGAAAATGGTGGATCCCCCAACGTCGTCTTCCTAATGCTCATCTTTTTACCATTGAACTTTTTGGCTGCCACTCAGGATATTGCCGTGGATGGATGGGCGTTGACTATGCTTTCCAAGTGAGTTTTTTGGGTTGAAAAATCAGAAATTCAGAAATTTTGAATACCGTAAAACCTGTATTAGAAGGGCCCCTTCACAAATAGAACTCGAAAATCCCCCAATTCTCGGTTCCTGGACGTTTTAGAGCCCGACGTTTCAGAACTTTTCTGCATTTTTGTATAGTGGTTTTCGCACACCAAATGAGCATT</canonical>
            <polymorphic>CAAAAATTTAAAAATTATCAAAATCAAAAAAAGTCCAAAAATCCAAATTTTTTAAAAATTCTAATAATTCTGGAAATTCTAGAAAAGCAAAGTTGGAAATATTGGAAATTTTGAAGAATTCAAATATATCTGAAATTCCCAAAATTTTCGAAAATTCTGAAAATTCTAAAAATCTGAAACTGTGAAATTCGAAAAATCCACAATTTTCTAAAATTCTCAAAAATCGTAAATTACCTGGAATTCAAAATTTTCTTCTAAAATATTGAAATTCCAAAATTTCTAAAAATTCAAAACACCGTAAAATTTGACAAGTCTGAAAATCTGAAAATTCTCAAAAATCCGAAATTATCGGAAATTCTGAAAATTATCCAAAAAAAATTATTGACCTTTCGAAATTCTGGAAATTCTGAATCTAATTCTGAAATATCTAAACACCTTAAAATTCGAAATTGTTGAAAAAGGAAGTTCTGAAAAATAGTTTTTTTGACTCTAAATTCCTMATTTTTCGTCATTTTCAGCCAATTTTAAGCTCCTAAAATCTCTAATTTTTCAGTATGAAACTCCTCTGGGCTCCCATCGTCGATTCAGTTTATTCGAAACGTTTGGGTCGCCGGAAATCCTGGATGGTGCCTTGTCAGTATTTAATTGGAGCATTTATGCTCTATTTATCATTCAAAGTTAATGATATCATGGGAGAAAATGGTGGATCCCCCAACGTCGTCTTCCTAATGCTCATCTTTTTACCATTGAACTTTTTGGCTGCCACTCAGGATATTGCCGTGGATGGATGGGCGTTGACTATGCTTTCCAAGTGAGTTTTTTGGGTTGAAAAATCAGAAATTCAGAAATTTTGAATACCGTAAAACCTGTATTAGAAGGGCCCCTTCACAAATAGAACTCGAAAATCCCCCAATTCTCGGTTCCTGGACGTTTTAGAGCCCGACGTTTCAGAACTTTTCTGCATTTTTGTATAGTGGTTTTCGCACACCAAATGAGCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTGAAATATCTAAACACCTTAAAA</pcr_primer_p1>
		<pcr_primer_p2>AGCATAAATGCTCCAATTAAATA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TTCTGAAATATCTAAACACCTTAAAATTCGAAATTGTTGAAAAAGGAAGTTCTGAAAAATAGTTTTTTTGACTCTAAATTCCTCATTTTTCGTCATTTTCAGCCAATTTTAAGCTCCTAAAATCTCTAATTTTTCAGTATGAAACTCCTCTGGGCTCCCATCGTCGATTCAGTTTATTCGAAACGTTTGGGTCGCCGGAAATCCTGGATGGTGCCTTGTCAGTATTTAATTGGAGCATTTATGCT</canonical_amplicon>
		<polymorphic_amplicon>TTCTGAAATATCTAAACACCTTAAAATTCGAAATTGTTGAAAAAGGAAGTTCTGAAAAATAGTTTTTTTGACTCTAAATTCCTMATTTTTCGTCATTTTCAGCCAATTTTAAGCTCCTAAAATCTCTAATTTTTCAGTATGAAACTCCTCTGGGCTCCCATCGTCGATTCAGTTTATTCGAAACGTTTGGGTCGCCGGAAATCCTGGATGGTGCCTTGTCAGTATTTAATTGGAGCATTTATGCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39482</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>61419</contig_pos>
        <strand>+</strand>
        <context>CAGAAATTCa[A/T]aaattttgaa</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGACTATGCTTTCCAAGTGAGTTTTTTGGGTTGAAAAATCAGAAATTCA</left_flank>
        <right_flank>AAATTTTGAATACCGTAAAACCTGTATTAGAAGGGCCCCTTCACAAATAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATCGGAAATTCTGAAAATTATCCAAAAAAAATTATTGACCTTTCGAAATTCTGGAAATTCTGAATCTAATTCTGAAATATCTAAACACCTTAAAATTCGAAATTGTTGAAAAAGGAAGTTCTGAAAAATAGTTTTTTTGACTCTAAATTCCTCATTTTTCGTCATTTTCAGCCAATTTTAAGCTCCTAAAATCTCTAATTTTTCAGTATGAAACTCCTCTGGGCTCCCATCGTCGATTCAGTTTATTCGAAACGTTTGGGTCGCCGGAAATCCTGGATGGTGCCTTGTCAGTATTTAATTGGAGCATTTATGCTCTATTTATCATTCAAAGTTAATGATATCATGGGAGAAAATGGTGGATCCCCCAACGTCGTCTTCCTAATGCTCATCTTTTTACCATTGAACTTTTTGGCTGCCACTCAGGATATTGCCGTGGATGGATGGGCGTTGACTATGCTTTCCAAGTGAGTTTTTTGGGTTGAAAAATCAGAAATTCAGAAATTTTGAATACCGTAAAACCTGTATTAGAAGGGCCCCTTCACAAATAGAACTCGAAAATCCCCCAATTCTCGGTTCCTGGACGTTTTAGAGCCCGACGTTTCAGAACTTTTCTGCATTTTTGTATAGTGGTTTTCGCACACCAAATGAGCATTGCTCATTTCAATTTTGTGTTTTGCCGCTTTTTCATTCATTCGCATCTACCGTACTCCAAATAATGATAAGTTCGCACTGGGAATCTTTCGAAAAATCGAAAAAATTGAANNNNNNNNNNNATTTTTTCGATTTTTCGAGAAATTCCCAGTGCGAACCTATCATTATTTGGAGTACGGTAGACGAGAATGAATGAAAAAGCAGATAATCACCAAATTGAAATGAGCAATGCTCATTTGGTGCACAAAAACCGCTATACAAAAATGCAGAAAGCTCTGAAACATCAGGTTCTGAACTGTCGTGGTTCTGAAACGTCGGGTTCTGAAACGTCCCGGAGCCGGAAGATA</canonical>
            <polymorphic>TTATCGGAAATTCTGAAAATTATCCAAAAAAAATTATTGACCTTTCGAAATTCTGGAAATTCTGAATCTAATTCTGAAATATCTAAACACCTTAAAATTCGAAATTGTTGAAAAAGGAAGTTCTGAAAAATAGTTTTTTTGACTCTAAATTCCTCATTTTTCGTCATTTTCAGCCAATTTTAAGCTCCTAAAATCTCTAATTTTTCAGTATGAAACTCCTCTGGGCTCCCATCGTCGATTCAGTTTATTCGAAACGTTTGGGTCGCCGGAAATCCTGGATGGTGCCTTGTCAGTATTTAATTGGAGCATTTATGCTCTATTTATCATTCAAAGTTAATGATATCATGGGAGAAAATGGTGGATCCCCCAACGTCGTCTTCCTAATGCTCATCTTTTTACCATTGAACTTTTTGGCTGCCACTCAGGATATTGCCGTGGATGGATGGGCGTTGACTATGCTTTCCAAGTGAGTTTTTTGGGTTGAAAAATCAGAAATTCAWAAATTTTGAATACCGTAAAACCTGTATTAGAAGGGCCCCTTCACAAATAGAACTCGAAAATCCCCCAATTCTCGGTTCCTGGACGTTTTAGAGCCCGACGTTTCAGAACTTTTCTGCATTTTTGTATAGTGGTTTTCGCACACCAAATGAGCATTGCTCATTTCAATTTTGTGTTTTGCCGCTTTTTCATTCATTCGCATCTACCGTACTCCAAATAATGATAAGTTCGCACTGGGAATCTTTCGAAAAATCGAAAAAATTGAANNNNNNNNNNNATTTTTTCGATTTTTCGAGAAATTCCCAGTGCGAACCTATCATTATTTGGAGTACGGTAGACGAGAATGAATGAAAAAGCAGATAATCACCAAATTGAAATGAGCAATGCTCATTTGGTGCACAAAAACCGCTATACAAAAATGCAGAAAGCTCTGAAACATCAGGTTCTGAACTGTCGTGGTTCTGAAACGTCGGGTTCTGAAACGTCCCGGAGCCGGAAGATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>367 325 106 49 49 24 16 15 15 12 8 8 6</canonical_bands>
                <polymorphic_bands>367 325 114 49 49 24 16 15 15 12 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTTCCTAATGCTCATCTTTTTA</pcr_primer_p1>
		<pcr_primer_p2>AAATGCAGAAAAGTTCTGAAAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TCTTCCTAATGCTCATCTTTTTACCATTGAACTTTTTGGCTGCCACTCAGGATATTGCCGTGGATGGATGGGCGTTGACTATGCTTTCCAAGTGAGTTTTTTGGGTTGAAAAATCAGAAATTCAGAAATTTTGAATACCGTAAAACCTGTATTAGAAGGGCCCCTTCACAAATAGAACTCGAAAATCCCCCAATTCTCGGTTCCTGGACGTTTTAGAGCCCGACGTTTCAGAACTTTTCTGCATTT</canonical_amplicon>
		<polymorphic_amplicon>TCTTCCTAATGCTCATCTTTTTACCATTGAACTTTTTGGCTGCCACTCAGGATATTGCCGTGGATGGATGGGCGTTGACTATGCTTTCCAAGTGAGTTTTTTGGGTTGAAAAATCAGAAATTCAWAAATTTTGAATACCGTAAAACCTGTATTAGAAGGGCCCCTTCACAAATAGAACTCGAAAATCCCCCAATTCTCGGTTCCTGGACGTTTTAGAGCCCGACGTTTCAGAACTTTTCTGCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39483</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>80658</contig_pos>
        <strand>+</strand>
        <context>GGAATGGAAG[A/G]TWCARATCGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTTTGAATTCCTCACATTATGGATTCTGGTGTCCTGGGGAGGAATGGAAG</left_flank>
        <right_flank>TTCAAATCGCGTTGAGAGATATTTCTACGCTGAGTTTGGGGATTTTTAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATCTTTCTCTCAAAAATTTCAAAAATCCTAGAATTTTCAGCAATATTTCTCCTTACCATGATTCAAACTTTGCTTTCAGGAGAGACACTTTTTTCTTCTTTACGTCAATTTTGTGCGATTCGTATTCGCTGGGGAGTAGAAATGAAGATGTGGTTAGAAAATTGATTGATTTTCAATTTTCGCCTATTGCTTATTTTCCTTTCTTTTTTTCGGTCGCCAGGAAGCGCCACGTTCGCCCAAATGCGCAATTTGAGATTTTTTTCAGATTTTCAAAAATTAAAAAAATTTCACAAAGAGATTTTTTTTGAGAATTTGAAAAGAGTAAAATCCGGAGAATTGAGATTAAGAGATTGATGATATGATTTTTTTTATGATCTGATTTTTAAAAACATTTAGCAGATTTTTGCGATTTCGGGAATTTCTCAAACATCGAAACTTTTAAAGTTCGTTTGAATTCCTCACATTATGGATTCTGGTGTCCTGGGGAGGAATGGAAGGTTCAAATCGCGTTGAGAGATATTTCTACGCTGAGTTTGGGGATTTTTAAAAATATAATATATCTTAAAATATAATATAATCTTAAACTTTGAACCTCAAATTTTAGGAGTCTGAGTTTTCTGAAAATTCTGAAACTTCCGAAATCCAAGATTCTGGAAAAGAAAAAGTACGGAAATTTTCTGATTTCAAAACACATTTTGAAAGGGGGGGGGGGGTCCATCTTCACAGAGGGTCCTTCTATTACAGGGGCCCTTCTATTTTTCCAAACCCCTTTCAAAGAGCCCTTGTATTAGAGGGGCCTTTCTATTAAAGGGGCCCTTCTGATACAGATTTTACGGTACTCTAATTTCAAAACTTTTCTATCATCAACTTCATTTTTCAAAAATAAATCTAAAGAAAACCCGAGTTCACAAAATGCCGCAGCATCCAAGACGTCTTCTCTTTTCCTCCTCTTTTTCCCTTTTTTCAATTCGTTTTCTTCTTTTACTATTCACTTTTTG</canonical>
            <polymorphic>GAATCTTTCTCTCAAAAATTTCAAAAATCCTAGAATTTTCAGCAATATTTCTCCTTACCATGATTCAAACTTTGCTTTCAGGAGAGACACTTTTTTCTTCTTTACGTCAATTTTGTGCGATTCGTATTCGCTGGGGAGTAGAAATGAAGATGTGGTTAGAAAATTGATTGATTTTCAATTTTCGCCTATTGCTTATTTTCCTTTCTTTTTTTCGGTCGCCAGGAAGCGCCACGTTCGCCCAAATGCGCAATTTGAGATTTTTTTCAGATTTTCAAAAATTAAAAAAATTTCACAAAGAGATTTTTTTTGAGAATTTGAAAAGAGTAAAATCCGGAGAATTGAGATTAAGAGATTGATGATATGATTTTTTTTATGATCTGATTTTTAAAAACATTTAGCAGATTTTTGCGATTTCGGGAATTTCTCAAACATCGAAACTTTTAAAGTTCGTTTGAATTCCTCACATTATGGATTCTGGTGTCCTGGGGAGGAATGGAAGRTTCAAATCGCGTTGAGAGATATTTCTACGCTGAGTTTGGGGATTTTTAAAAATATAATATATCTTAAAATATAATATAATCTTAAACTTTGAACCTCAAATTTTAGGAGTCTGAGTTTTCTGAAAATTCTGAAACTTCCGAAATCCAAGATTCTGGAAAAGAAAAAGTACGGAAATTTTCTGATTTCAAAACACATTTTGAAAGGGGGGGGGGGGTCCATCTTCACAGAGGGTCCTTCTATTACAGGGGCCCTTCTATTTTTCCAAACCCCTTTCAAAGAGCCCTTGTATTAGAGGGGCCTTTCTATTAAAGGGGCCCTTCTGATACAGATTTTACGGTACTCTAATTTCAAAACTTTTCTATCATCAACTTCATTTTTCAAAAATAAATCTAAAGAAAACCCGAGTTCACAAAATGCCGCAGCATCCAAGACGTCTTCTCTTTTCCTCCTCTTTTTCCCTTTTTTCAATTCGTTTTCTTCTTTTACTATTCACTTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCAAACATCGAAACTTTTA</pcr_primer_p1>
		<pcr_primer_p2>GTACTTTTTCTTTTCCAGAATCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCAAACATCGAAACTTTTAAAGTTCGTTTGAATTCCTCACATTATGGATTCTGGTGTCCTGGGGAGGAATGGAAGGTTCAAATCGCGTTGAGAGATATTTCTACGCTGAGTTTGGGGATTTTTAAAAATATAATATATCTTAAAATATAATATAATCTTAAACTTTGAACCTCAAATTTTAGGAGTCTGAGTTTTCTGAAAATTCTGAAACTTCCGAAATCCAAGATTCTGGAAAAGAAAAAGTAC</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCAAACATCGAAACTTTTAAAGTTCGTTTGAATTCCTCACATTATGGATTCTGGTGTCCTGGGGAGGAATGGAAGRTTCAAATCGCGTTGAGAGATATTTCTACGCTGAGTTTGGGGATTTTTAAAAATATAATATATCTTAAAATATAATATAATCTTAAACTTTGAACCTCAAATTTTAGGAGTCTGAGTTTTCTGAAAATTCTGAAACTTCCGAAATCCAAGATTCTGGAAAAGAAAAAGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39484</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>80660</contig_pos>
        <strand>+</strand>
        <context>AATGGAAGRT[A/T]CARATCGCGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGAATTCCTCACATTATGGATTCTGGTGTCCTGGGGAGGAATGGAAGGT</left_flank>
        <right_flank>CAAATCGCGTTGAGAGATATTTCTACGCTGAGTTTGGGGATTTTTAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCTTTCTCTCAAAAATTTCAAAAATCCTAGAATTTTCAGCAATATTTCTCCTTACCATGATTCAAACTTTGCTTTCAGGAGAGACACTTTTTTCTTCTTTACGTCAATTTTGTGCGATTCGTATTCGCTGGGGAGTAGAAATGAAGATGTGGTTAGAAAATTGATTGATTTTCAATTTTCGCCTATTGCTTATTTTCCTTTCTTTTTTTCGGTCGCCAGGAAGCGCCACGTTCGCCCAAATGCGCAATTTGAGATTTTTTTCAGATTTTCAAAAATTAAAAAAATTTCACAAAGAGATTTTTTTTGAGAATTTGAAAAGAGTAAAATCCGGAGAATTGAGATTAAGAGATTGATGATATGATTTTTTTTATGATCTGATTTTTAAAAACATTTAGCAGATTTTTGCGATTTCGGGAATTTCTCAAACATCGAAACTTTTAAAGTTCGTTTGAATTCCTCACATTATGGATTCTGGTGTCCTGGGGAGGAATGGAAGGTTCAAATCGCGTTGAGAGATATTTCTACGCTGAGTTTGGGGATTTTTAAAAATATAATATATCTTAAAATATAATATAATCTTAAACTTTGAACCTCAAATTTTAGGAGTCTGAGTTTTCTGAAAATTCTGAAACTTCCGAAATCCAAGATTCTGGAAAAGAAAAAGTACGGAAATTTTCTGATTTCAAAACACATTTTGAAAGGGGGGGGGGGGTCCATCTTCACAGAGGGTCCTTCTATTACAGGGGCCCTTCTATTTTTCCAAACCCCTTTCAAAGAGCCCTTGTATTAGAGGGGCCTTTCTATTAAAGGGGCCCTTCTGATACAGATTTTACGGTACTCTAATTTCAAAACTTTTCTATCATCAACTTCATTTTTCAAAAATAAATCTAAAGAAAACCCGAGTTCACAAAATGCCGCAGCATCCAAGACGTCTTCTCTTTTCCTCCTCTTTTTCCCTTTTTTCAATTCGTTTTCTTCTTTTACTATTCACTTTTTGAA</canonical>
            <polymorphic>ATCTTTCTCTCAAAAATTTCAAAAATCCTAGAATTTTCAGCAATATTTCTCCTTACCATGATTCAAACTTTGCTTTCAGGAGAGACACTTTTTTCTTCTTTACGTCAATTTTGTGCGATTCGTATTCGCTGGGGAGTAGAAATGAAGATGTGGTTAGAAAATTGATTGATTTTCAATTTTCGCCTATTGCTTATTTTCCTTTCTTTTTTTCGGTCGCCAGGAAGCGCCACGTTCGCCCAAATGCGCAATTTGAGATTTTTTTCAGATTTTCAAAAATTAAAAAAATTTCACAAAGAGATTTTTTTTGAGAATTTGAAAAGAGTAAAATCCGGAGAATTGAGATTAAGAGATTGATGATATGATTTTTTTTATGATCTGATTTTTAAAAACATTTAGCAGATTTTTGCGATTTCGGGAATTTCTCAAACATCGAAACTTTTAAAGTTCGTTTGAATTCCTCACATTATGGATTCTGGTGTCCTGGGGAGGAATGGAAGGTWCAAATCGCGTTGAGAGATATTTCTACGCTGAGTTTGGGGATTTTTAAAAATATAATATATCTTAAAATATAATATAATCTTAAACTTTGAACCTCAAATTTTAGGAGTCTGAGTTTTCTGAAAATTCTGAAACTTCCGAAATCCAAGATTCTGGAAAAGAAAAAGTACGGAAATTTTCTGATTTCAAAACACATTTTGAAAGGGGGGGGGGGGTCCATCTTCACAGAGGGTCCTTCTATTACAGGGGCCCTTCTATTTTTCCAAACCCCTTTCAAAGAGCCCTTGTATTAGAGGGGCCTTTCTATTAAAGGGGCCCTTCTGATACAGATTTTACGGTACTCTAATTTCAAAACTTTTCTATCATCAACTTCATTTTTCAAAAATAAATCTAAAGAAAACCCGAGTTCACAAAATGCCGCAGCATCCAAGACGTCTTCTCTTTTCCTCCTCTTTTTCCCTTTTTTCAATTCGTTTTCTTCTTTTACTATTCACTTTTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCAAACATCGAAACTTTTA</pcr_primer_p1>
		<pcr_primer_p2>GTACTTTTTCTTTTCCAGAATCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCAAACATCGAAACTTTTAAAGTTCGTTTGAATTCCTCACATTATGGATTCTGGTGTCCTGGGGAGGAATGGAAGGTTCAAATCGCGTTGAGAGATATTTCTACGCTGAGTTTGGGGATTTTTAAAAATATAATATATCTTAAAATATAATATAATCTTAAACTTTGAACCTCAAATTTTAGGAGTCTGAGTTTTCTGAAAATTCTGAAACTTCCGAAATCCAAGATTCTGGAAAAGAAAAAGTAC</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCAAACATCGAAACTTTTAAAGTTCGTTTGAATTCCTCACATTATGGATTCTGGTGTCCTGGGGAGGAATGGAAGGTWCAAATCGCGTTGAGAGATATTTCTACGCTGAGTTTGGGGATTTTTAAAAATATAATATATCTTAAAATATAATATAATCTTAAACTTTGAACCTCAAATTTTAGGAGTCTGAGTTTTCTGAAAATTCTGAAACTTCCGAAATCCAAGATTCTGGAAAAGAAAAAGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39485</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>80663</contig_pos>
        <strand>+</strand>
        <context>GGAAGRTWCA[A/G]ATCGCGTYGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTCCTCACATTATGGATTCTGGTGTCCTGGGGAGGAATGGAAGGTTCA</left_flank>
        <right_flank>ATCGCGTTGAGAGATATTTCTACGCTGAGTTTGGGGATTTTTAAAAATAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTCTCAAAAATTTCAAAAATCCTAGAATTTTCAGCAATATTTCTCCTTACCATGATTCAAACTTTGCTTTCAGGAGAGACACTTTTTTCTTCTTTACGTCAATTTTGTGCGATTCGTATTCGCTGGGGAGTAGAAATGAAGATGTGGTTAGAAAATTGATTGATTTTCAATTTTCGCCTATTGCTTATTTTCCTTTCTTTTTTTCGGTCGCCAGGAAGCGCCACGTTCGCCCAAATGCGCAATTTGAGATTTTTTTCAGATTTTCAAAAATTAAAAAAATTTCACAAAGAGATTTTTTTTGAGAATTTGAAAAGAGTAAAATCCGGAGAATTGAGATTAAGAGATTGATGATATGATTTTTTTTATGATCTGATTTTTAAAAACATTTAGCAGATTTTTGCGATTTCGGGAATTTCTCAAACATCGAAACTTTTAAAGTTCGTTTGAATTCCTCACATTATGGATTCTGGTGTCCTGGGGAGGAATGGAAGGTTCAAATCGCGTTGAGAGATATTTCTACGCTGAGTTTGGGGATTTTTAAAAATATAATATATCTTAAAATATAATATAATCTTAAACTTTGAACCTCAAATTTTAGGAGTCTGAGTTTTCTGAAAATTCTGAAACTTCCGAAATCCAAGATTCTGGAAAAGAAAAAGTACGGAAATTTTCTGATTTCAAAACACATTTTGAAAGGGGGGGGGGGGTCCATCTTCACAGAGGGTCCTTCTATTACAGGGGCCCTTCTATTTTTCCAAACCCCTTTCAAAGAGCCCTTGTATTAGAGGGGCCTTTCTATTAAAGGGGCCCTTCTGATACAGATTTTACGGTACTCTAATTTCAAAACTTTTCTATCATCAACTTCATTTTTCAAAAATAAATCTAAAGAAAACCCGAGTTCACAAAATGCCGCAGCATCCAAGACGTCTTCTCTTTTCCTCCTCTTTTTCCCTTTTTTCAATTCGTTTTCTTCTTTTACTATTCACTTTTTGAACTG</canonical>
            <polymorphic>TTTCTCTCAAAAATTTCAAAAATCCTAGAATTTTCAGCAATATTTCTCCTTACCATGATTCAAACTTTGCTTTCAGGAGAGACACTTTTTTCTTCTTTACGTCAATTTTGTGCGATTCGTATTCGCTGGGGAGTAGAAATGAAGATGTGGTTAGAAAATTGATTGATTTTCAATTTTCGCCTATTGCTTATTTTCCTTTCTTTTTTTCGGTCGCCAGGAAGCGCCACGTTCGCCCAAATGCGCAATTTGAGATTTTTTTCAGATTTTCAAAAATTAAAAAAATTTCACAAAGAGATTTTTTTTGAGAATTTGAAAAGAGTAAAATCCGGAGAATTGAGATTAAGAGATTGATGATATGATTTTTTTTATGATCTGATTTTTAAAAACATTTAGCAGATTTTTGCGATTTCGGGAATTTCTCAAACATCGAAACTTTTAAAGTTCGTTTGAATTCCTCACATTATGGATTCTGGTGTCCTGGGGAGGAATGGAAGGTTCARATCGCGTTGAGAGATATTTCTACGCTGAGTTTGGGGATTTTTAAAAATATAATATATCTTAAAATATAATATAATCTTAAACTTTGAACCTCAAATTTTAGGAGTCTGAGTTTTCTGAAAATTCTGAAACTTCCGAAATCCAAGATTCTGGAAAAGAAAAAGTACGGAAATTTTCTGATTTCAAAACACATTTTGAAAGGGGGGGGGGGGTCCATCTTCACAGAGGGTCCTTCTATTACAGGGGCCCTTCTATTTTTCCAAACCCCTTTCAAAGAGCCCTTGTATTAGAGGGGCCTTTCTATTAAAGGGGCCCTTCTGATACAGATTTTACGGTACTCTAATTTCAAAACTTTTCTATCATCAACTTCATTTTTCAAAAATAAATCTAAAGAAAACCCGAGTTCACAAAATGCCGCAGCATCCAAGACGTCTTCTCTTTTCCTCCTCTTTTTCCCTTTTTTCAATTCGTTTTCTTCTTTTACTATTCACTTTTTGAACTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCAAACATCGAAACTTTTA</pcr_primer_p1>
		<pcr_primer_p2>GTACTTTTTCTTTTCCAGAATCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCAAACATCGAAACTTTTAAAGTTCGTTTGAATTCCTCACATTATGGATTCTGGTGTCCTGGGGAGGAATGGAAGGTTCAAATCGCGTTGAGAGATATTTCTACGCTGAGTTTGGGGATTTTTAAAAATATAATATATCTTAAAATATAATATAATCTTAAACTTTGAACCTCAAATTTTAGGAGTCTGAGTTTTCTGAAAATTCTGAAACTTCCGAAATCCAAGATTCTGGAAAAGAAAAAGTAC</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCAAACATCGAAACTTTTAAAGTTCGTTTGAATTCCTCACATTATGGATTCTGGTGTCCTGGGGAGGAATGGAAGGTTCARATCGCGTTGAGAGATATTTCTACGCTGAGTTTGGGGATTTTTAAAAATATAATATATCTTAAAATATAATATAATCTTAAACTTTGAACCTCAAATTTTAGGAGTCTGAGTTTTCTGAAAATTCTGAAACTTCCGAAATCCAAGATTCTGGAAAAGAAAAAGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39486</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>80671</contig_pos>
        <strand>+</strand>
        <context>CARATCGCGT[C/T]GAGAGATATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACATTATGGATTCTGGTGTCCTGGGGAGGAATGGAAGGTTCAAATCGCGT</left_flank>
        <right_flank>GAGAGATATTTCTACGCTGAGTTTGGGGATTTTTAAAAATATAATATATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATTTCAAAAATCCTAGAATTTTCAGCAATATTTCTCCTTACCATGATTCAAACTTTGCTTTCAGGAGAGACACTTTTTTCTTCTTTACGTCAATTTTGTGCGATTCGTATTCGCTGGGGAGTAGAAATGAAGATGTGGTTAGAAAATTGATTGATTTTCAATTTTCGCCTATTGCTTATTTTCCTTTCTTTTTTTCGGTCGCCAGGAAGCGCCACGTTCGCCCAAATGCGCAATTTGAGATTTTTTTCAGATTTTCAAAAATTAAAAAAATTTCACAAAGAGATTTTTTTTGAGAATTTGAAAAGAGTAAAATCCGGAGAATTGAGATTAAGAGATTGATGATATGATTTTTTTTATGATCTGATTTTTAAAAACATTTAGCAGATTTTTGCGATTTCGGGAATTTCTCAAACATCGAAACTTTTAAAGTTCGTTTGAATTCCTCACATTATGGATTCTGGTGTCCTGGGGAGGAATGGAAGGTTCAAATCGCGTTGAGAGATATTTCTACGCTGAGTTTGGGGATTTTTAAAAATATAATATATCTTAAAATATAATATAATCTTAAACTTTGAACCTCAAATTTTAGGAGTCTGAGTTTTCTGAAAATTCTGAAACTTCCGAAATCCAAGATTCTGGAAAAGAAAAAGTACGGAAATTTTCTGATTTCAAAACACATTTTGAAAGGGGGGGGGGGGTCCATCTTCACAGAGGGTCCTTCTATTACAGGGGCCCTTCTATTTTTCCAAACCCCTTTCAAAGAGCCCTTGTATTAGAGGGGCCTTTCTATTAAAGGGGCCCTTCTGATACAGATTTTACGGTACTCTAATTTCAAAACTTTTCTATCATCAACTTCATTTTTCAAAAATAAATCTAAAGAAAACCCGAGTTCACAAAATGCCGCAGCATCCAAGACGTCTTCTCTTTTCCTCCTCTTTTTCCCTTTTTTCAATTCGTTTTCTTCTTTTACTATTCACTTTTTGAACTGGAAAAGCT</canonical>
            <polymorphic>AAAAATTTCAAAAATCCTAGAATTTTCAGCAATATTTCTCCTTACCATGATTCAAACTTTGCTTTCAGGAGAGACACTTTTTTCTTCTTTACGTCAATTTTGTGCGATTCGTATTCGCTGGGGAGTAGAAATGAAGATGTGGTTAGAAAATTGATTGATTTTCAATTTTCGCCTATTGCTTATTTTCCTTTCTTTTTTTCGGTCGCCAGGAAGCGCCACGTTCGCCCAAATGCGCAATTTGAGATTTTTTTCAGATTTTCAAAAATTAAAAAAATTTCACAAAGAGATTTTTTTTGAGAATTTGAAAAGAGTAAAATCCGGAGAATTGAGATTAAGAGATTGATGATATGATTTTTTTTATGATCTGATTTTTAAAAACATTTAGCAGATTTTTGCGATTTCGGGAATTTCTCAAACATCGAAACTTTTAAAGTTCGTTTGAATTCCTCACATTATGGATTCTGGTGTCCTGGGGAGGAATGGAAGGTTCAAATCGCGTYGAGAGATATTTCTACGCTGAGTTTGGGGATTTTTAAAAATATAATATATCTTAAAATATAATATAATCTTAAACTTTGAACCTCAAATTTTAGGAGTCTGAGTTTTCTGAAAATTCTGAAACTTCCGAAATCCAAGATTCTGGAAAAGAAAAAGTACGGAAATTTTCTGATTTCAAAACACATTTTGAAAGGGGGGGGGGGGTCCATCTTCACAGAGGGTCCTTCTATTACAGGGGCCCTTCTATTTTTCCAAACCCCTTTCAAAGAGCCCTTGTATTAGAGGGGCCTTTCTATTAAAGGGGCCCTTCTGATACAGATTTTACGGTACTCTAATTTCAAAACTTTTCTATCATCAACTTCATTTTTCAAAAATAAATCTAAAGAAAACCCGAGTTCACAAAATGCCGCAGCATCCAAGACGTCTTCTCTTTTCCTCCTCTTTTTCCCTTTTTTCAATTCGTTTTCTTCTTTTACTATTCACTTTTTGAACTGGAAAAGCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCTCAAACATCGAAACTTTTA</pcr_primer_p1>
		<pcr_primer_p2>GTACTTTTTCTTTTCCAGAATCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTTCTCAAACATCGAAACTTTTAAAGTTCGTTTGAATTCCTCACATTATGGATTCTGGTGTCCTGGGGAGGAATGGAAGGTTCAAATCGCGTTGAGAGATATTTCTACGCTGAGTTTGGGGATTTTTAAAAATATAATATATCTTAAAATATAATATAATCTTAAACTTTGAACCTCAAATTTTAGGAGTCTGAGTTTTCTGAAAATTCTGAAACTTCCGAAATCCAAGATTCTGGAAAAGAAAAAGTAC</canonical_amplicon>
		<polymorphic_amplicon>TTTCTCAAACATCGAAACTTTTAAAGTTCGTTTGAATTCCTCACATTATGGATTCTGGTGTCCTGGGGAGGAATGGAAGGTTCAAATCGCGTYGAGAGATATTTCTACGCTGAGTTTGGGGATTTTTAAAAATATAATATATCTTAAAATATAATATAATCTTAAACTTTGAACCTCAAATTTTAGGAGTCTGAGTTTTCTGAAAATTCTGAAACTTCCGAAATCCAAGATTCTGGAAAAGAAAAAGTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39487</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>80964</contig_pos>
        <strand></strand>
        <context>gggcctttct[A/G]ttaaaggggc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TATTTTTCCAAACCCCTTTCAAAGAGCCCTTGTATTAGAGGGGCCTTTCT</left_flank>
        <right_flank>TTAAAGGGGCCCTTCTGATACAGATTTTACGGTACTCTAATTTCAAAACT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAGAATTTGAAAAGAGTAAAATCCGGAGAATTGAGATTAAGAGATTGATGATATGATTTTTTTTATGATCTGATTTTTAAAAACATTTAGCAGATTTTTGCGATTTCGGGAATTTCTCAAACATCGAAACTTTTAAAGTTCGTTTGAATTCCTCACATTATGGATTCTGGTGTCCTGGGGAGGAATGGAAGGTTCAAATCGCGTTGAGAGATATTTCTACGCTGAGTTTGGGGATTTTTAAAAATATAATATATCTTAAAATATAATATAATCTTAAACTTTGAACCTCAAATTTTAGGAGTCTGAGTTTTCTGAAAATTCTGAAACTTCCGAAATCCAAGATTCTGGAAAAGAAAAAGTACGGAAATTTTCTGATTTCAAAACACATTTTGAAAGGGGGGGGGGGGTCCATCTTCACAGAGGGTCCTTCTATTACAGGGGCCCTTCTATTTTTCCAAACCCCTTTCAAAGAGCCCTTGTATTAGAGGGGCCTTTCTATTAAAGGGGCCCTTCTGATACAGATTTTACGGTACTCTAATTTCAAAACTTTTCTATCATCAACTTCATTTTTCAAAAATAAATCTAAAGAAAACCCGAGTTCACAAAATGCCGCAGCATCCAAGACGTCTTCTCTTTTCCTCCTCTTTTTCCCTTTTTTCAATTCGTTTTCTTCTTTTACTATTCACTTTTTGAACTGGAAAAGCTCACTTTTCGTGAAATTACAATTTCCAAGTAGCCGTATTGTATGATTTTCCAGTGTTGCTTCTTGAGTGCTCTGCAGACTTTTCGATTGCACAATTTTCTCCGATTTTTCCGATTTTTCCGATTTTTTGGTTTCAGACTTTTCTACTTTTTCCAGAGTCTTCTTTTCCGATTTCTTCTTCTCCTCCTGGACCAAATTTTTTGATTTTCTGTTTTTTTTTTTGGATGTTCTGAAATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTTTAAGATTATGAGATTATGAGATTCT</canonical>
            <polymorphic>TTGAGAATTTGAAAAGAGTAAAATCCGGAGAATTGAGATTAAGAGATTGATGATATGATTTTTTTTATGATCTGATTTTTAAAAACATTTAGCAGATTTTTGCGATTTCGGGAATTTCTCAAACATCGAAACTTTTAAAGTTCGTTTGAATTCCTCACATTATGGATTCTGGTGTCCTGGGGAGGAATGGAAGGTTCAAATCGCGTTGAGAGATATTTCTACGCTGAGTTTGGGGATTTTTAAAAATATAATATATCTTAAAATATAATATAATCTTAAACTTTGAACCTCAAATTTTAGGAGTCTGAGTTTTCTGAAAATTCTGAAACTTCCGAAATCCAAGATTCTGGAAAAGAAAAAGTACGGAAATTTTCTGATTTCAAAACACATTTTGAAAGGGGGGGGGGGGTCCATCTTCACAGAGGGTCCTTCTATTACAGGGGCCCTTCTATTTTTCCAAACCCCTTTCAAAGAGCCCTTGTATTAGAGGGGCCTTTCTRTTAAAGGGGCCCTTCTGATACAGATTTTACGGTACTCTAATTTCAAAACTTTTCTATCATCAACTTCATTTTTCAAAAATAAATCTAAAGAAAACCCGAGTTCACAAAATGCCGCAGCATCCAAGACGTCTTCTCTTTTCCTCCTCTTTTTCCCTTTTTTCAATTCGTTTTCTTCTTTTACTATTCACTTTTTGAACTGGAAAAGCTCACTTTTCGTGAAATTACAATTTCCAAGTAGCCGTATTGTATGATTTTCCAGTGTTGCTTCTTGAGTGCTCTGCAGACTTTTCGATTGCACAATTTTCTCCGATTTTTCCGATTTTTCCGATTTTTTGGTTTCAGACTTTTCTACTTTTTCCAGAGTCTTCTTTTCCGATTTCTTCTTCTCCTCCTGGACCAAATTTTTTGATTTTCTGTTTTTTTTTTTGGATGTTCTGAAATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTTTAAGATTATGAGATTATGAGATTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAGATTCTGGAAAAGAAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAAAAATGAAGTTGATGAT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CAAGATTCTGGAAAAGAAAAAGTACGGAAATTTTCTGATTTCAAAACACATTTTGAAAGGGGGGGGGGGGTCCATCTTCACAGAGGGTCCTTCTATTACAGGGGCCCTTCTATTTTTCCAAACCCCTTTCAAAGAGCCCTTGTATTAGAGGGGCCTTTCTATTAAAGGGGCCCTTCTGATACAGATTTTACGGTACTCTAATTTCAAAACTTTTCTATCATCAACTTCATTTTTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>CAAGATTCTGGAAAAGAAAAAGTACGGAAATTTTCTGATTTCAAAACACATTTTGAAAGGGGGGGGGGGGTCCATCTTCACAGAGGGTCCTTCTATTACAGGGGCCCTTCTATTTTTCCAAACCCCTTTCAAAGAGCCCTTGTATTAGAGGGGCCTTTCTRTTAAAGGGGCCCTTCTGATACAGATTTTACGGTACTCTAATTTCAAAACTTTTCTATCATCAACTTCATTTTTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39488</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>80979</contig_pos>
        <strand></strand>
        <context>aggggccctt[C/T]tgatacagat</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTTTCAAAGAGCCCTTGTATTAGAGGGGCCTTTCTATTAAAGGGGCCCTT</left_flank>
        <right_flank>TGATACAGATTTTACGGTACTCTAATTTCAAAACTTTTCTATCATCAACT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGTAAAATCCGGAGAATTGAGATTAAGAGATTGATGATATGATTTTTTTTATGATCTGATTTTTAAAAACATTTAGCAGATTTTTGCGATTTCGGGAATTTCTCAAACATCGAAACTTTTAAAGTTCGTTTGAATTCCTCACATTATGGATTCTGGTGTCCTGGGGAGGAATGGAAGGTTCAAATCGCGTTGAGAGATATTTCTACGCTGAGTTTGGGGATTTTTAAAAATATAATATATCTTAAAATATAATATAATCTTAAACTTTGAACCTCAAATTTTAGGAGTCTGAGTTTTCTGAAAATTCTGAAACTTCCGAAATCCAAGATTCTGGAAAAGAAAAAGTACGGAAATTTTCTGATTTCAAAACACATTTTGAAAGGGGGGGGGGGGTCCATCTTCACAGAGGGTCCTTCTATTACAGGGGCCCTTCTATTTTTCCAAACCCCTTTCAAAGAGCCCTTGTATTAGAGGGGCCTTTCTATTAAAGGGGCCCTTCTGATACAGATTTTACGGTACTCTAATTTCAAAACTTTTCTATCATCAACTTCATTTTTCAAAAATAAATCTAAAGAAAACCCGAGTTCACAAAATGCCGCAGCATCCAAGACGTCTTCTCTTTTCCTCCTCTTTTTCCCTTTTTTCAATTCGTTTTCTTCTTTTACTATTCACTTTTTGAACTGGAAAAGCTCACTTTTCGTGAAATTACAATTTCCAAGTAGCCGTATTGTATGATTTTCCAGTGTTGCTTCTTGAGTGCTCTGCAGACTTTTCGATTGCACAATTTTCTCCGATTTTTCCGATTTTTCCGATTTTTTGGTTTCAGACTTTTCTACTTTTTCCAGAGTCTTCTTTTCCGATTTCTTCTTCTCCTCCTGGACCAAATTTTTTGATTTTCTGTTTTTTTTTTTGGATGTTCTGAAATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTTTAAGATTATGAGATTATGAGATTCTGAAATTCTGCAGTTC</canonical>
            <polymorphic>GAGTAAAATCCGGAGAATTGAGATTAAGAGATTGATGATATGATTTTTTTTATGATCTGATTTTTAAAAACATTTAGCAGATTTTTGCGATTTCGGGAATTTCTCAAACATCGAAACTTTTAAAGTTCGTTTGAATTCCTCACATTATGGATTCTGGTGTCCTGGGGAGGAATGGAAGGTTCAAATCGCGTTGAGAGATATTTCTACGCTGAGTTTGGGGATTTTTAAAAATATAATATATCTTAAAATATAATATAATCTTAAACTTTGAACCTCAAATTTTAGGAGTCTGAGTTTTCTGAAAATTCTGAAACTTCCGAAATCCAAGATTCTGGAAAAGAAAAAGTACGGAAATTTTCTGATTTCAAAACACATTTTGAAAGGGGGGGGGGGGTCCATCTTCACAGAGGGTCCTTCTATTACAGGGGCCCTTCTATTTTTCCAAACCCCTTTCAAAGAGCCCTTGTATTAGAGGGGCCTTTCTATTAAAGGGGCCCTTYTGATACAGATTTTACGGTACTCTAATTTCAAAACTTTTCTATCATCAACTTCATTTTTCAAAAATAAATCTAAAGAAAACCCGAGTTCACAAAATGCCGCAGCATCCAAGACGTCTTCTCTTTTCCTCCTCTTTTTCCCTTTTTTCAATTCGTTTTCTTCTTTTACTATTCACTTTTTGAACTGGAAAAGCTCACTTTTCGTGAAATTACAATTTCCAAGTAGCCGTATTGTATGATTTTCCAGTGTTGCTTCTTGAGTGCTCTGCAGACTTTTCGATTGCACAATTTTCTCCGATTTTTCCGATTTTTCCGATTTTTTGGTTTCAGACTTTTCTACTTTTTCCAGAGTCTTCTTTTCCGATTTCTTCTTCTCCTCCTGGACCAAATTTTTTGATTTTCTGTTTTTTTTTTTGGATGTTCTGAAATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTTTAAGATTATGAGATTATGAGATTCTGAAATTCTGCAGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>292 233 141 62 58 42 33 32 15 15 9 9 9 9 9 8 8 8 8</canonical_bands>
                <polymorphic_bands>433 233 62 58 42 33 32 15 15 9 9 9 9 9 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAGATTCTGGAAAAGAAAAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAAAAATGAAGTTGATGAT</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>CAAGATTCTGGAAAAGAAAAAGTACGGAAATTTTCTGATTTCAAAACACATTTTGAAAGGGGGGGGGGGGTCCATCTTCACAGAGGGTCCTTCTATTACAGGGGCCCTTCTATTTTTCCAAACCCCTTTCAAAGAGCCCTTGTATTAGAGGGGCCTTTCTATTAAAGGGGCCCTTCTGATACAGATTTTACGGTACTCTAATTTCAAAACTTTTCTATCATCAACTTCATTTTTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>CAAGATTCTGGAAAAGAAAAAGTACGGAAATTTTCTGATTTCAAAACACATTTTGAAAGGGGGGGGGGGGTCCATCTTCACAGAGGGTCCTTCTATTACAGGGGCCCTTCTATTTTTCCAAACCCCTTTCAAAGAGCCCTTGTATTAGAGGGGCCTTTCTATTAAAGGGGCCCTTYTGATACAGATTTTACGGTACTCTAATTTCAAAACTTTTCTATCATCAACTTCATTTTTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39489</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>81044</contig_pos>
        <strand>+</strand>
        <context>TTTTCAAAAA[G/T]AAATCTAAAG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CGGTACTCTAATTTCAAAACTTTTCTATCATCAACTTCATTTTTCAAAAA</left_flank>
        <right_flank>AAATCTAAAGAAAACCCGAGTTCACAAAATGCCGCAGCATCCAAGACGTC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAACATTTAGCAGATTTTTGCGATTTCGGGAATTTCTCAAACATCGAAACTTTTAAAGTTCGTTTGAATTCCTCACATTATGGATTCTGGTGTCCTGGGGAGGAATGGAAGGTTCAAATCGCGTTGAGAGATATTTCTACGCTGAGTTTGGGGATTTTTAAAAATATAATATATCTTAAAATATAATATAATCTTAAACTTTGAACCTCAAATTTTAGGAGTCTGAGTTTTCTGAAAATTCTGAAACTTCCGAAATCCAAGATTCTGGAAAAGAAAAAGTACGGAAATTTTCTGATTTCAAAACACATTTTGAAAGGGGGGGGGGGGTCCATCTTCACAGAGGGTCCTTCTATTACAGGGGCCCTTCTATTTTTCCAAACCCCTTTCAAAGAGCCCTTGTATTAGAGGGGCCTTTCTATTAAAGGGGCCCTTCTGATACAGATTTTACGGTACTCTAATTTCAAAACTTTTCTATCATCAACTTCATTTTTCAAAAATAAATCTAAAGAAAACCCGAGTTCACAAAATGCCGCAGCATCCAAGACGTCTTCTCTTTTCCTCCTCTTTTTCCCTTTTTTCAATTCGTTTTCTTCTTTTACTATTCACTTTTTGAACTGGAAAAGCTCACTTTTCGTGAAATTACAATTTCCAAGTAGCCGTATTGTATGATTTTCCAGTGTTGCTTCTTGAGTGCTCTGCAGACTTTTCGATTGCACAATTTTCTCCGATTTTTCCGATTTTTCCGATTTTTTGGTTTCAGACTTTTCTACTTTTTCCAGAGTCTTCTTTTCCGATTTCTTCTTCTCCTCCTGGACCAAATTTTTTGATTTTCTGTTTTTTTTTTTGGATGTTCTGAAATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTTTAAGATTATGAGATTATGAGATTCTGAAATTCTGCAGTTCATAACTTCCTGATTTTCTTTTTTTCAGTAAATTTTGAATTACTGAATTTCTGAATTTCCGAATTT</canonical>
            <polymorphic>AAAAACATTTAGCAGATTTTTGCGATTTCGGGAATTTCTCAAACATCGAAACTTTTAAAGTTCGTTTGAATTCCTCACATTATGGATTCTGGTGTCCTGGGGAGGAATGGAAGGTTCAAATCGCGTTGAGAGATATTTCTACGCTGAGTTTGGGGATTTTTAAAAATATAATATATCTTAAAATATAATATAATCTTAAACTTTGAACCTCAAATTTTAGGAGTCTGAGTTTTCTGAAAATTCTGAAACTTCCGAAATCCAAGATTCTGGAAAAGAAAAAGTACGGAAATTTTCTGATTTCAAAACACATTTTGAAAGGGGGGGGGGGGTCCATCTTCACAGAGGGTCCTTCTATTACAGGGGCCCTTCTATTTTTCCAAACCCCTTTCAAAGAGCCCTTGTATTAGAGGGGCCTTTCTATTAAAGGGGCCCTTCTGATACAGATTTTACGGTACTCTAATTTCAAAACTTTTCTATCATCAACTTCATTTTTCAAAAAKAAATCTAAAGAAAACCCGAGTTCACAAAATGCCGCAGCATCCAAGACGTCTTCTCTTTTCCTCCTCTTTTTCCCTTTTTTCAATTCGTTTTCTTCTTTTACTATTCACTTTTTGAACTGGAAAAGCTCACTTTTCGTGAAATTACAATTTCCAAGTAGCCGTATTGTATGATTTTCCAGTGTTGCTTCTTGAGTGCTCTGCAGACTTTTCGATTGCACAATTTTCTCCGATTTTTCCGATTTTTCCGATTTTTTGGTTTCAGACTTTTCTACTTTTTCCAGAGTCTTCTTTTCCGATTTCTTCTTCTCCTCCTGGACCAAATTTTTTGATTTTCTGTTTTTTTTTTTGGATGTTCTGAAATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTTTAAGATTATGAGATTATGAGATTCTGAAATTCTGCAGTTCATAACTTCCTGATTTTCTTTTTTTCAGTAAATTTTGAATTACTGAATTTCTGAATTTCCGAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACAGAGGGTCCTTCTATTACA</pcr_primer_p1>
		<pcr_primer_p2>TTTTCCAGTTCAAAAAGTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>CACAGAGGGTCCTTCTATTACAGGGGCCCTTCTATTTTTCCAAACCCCTTTCAAAGAGCCCTTGTATTAGAGGGGCCTTTCTATTAAAGGGGCCCTTCTGATACAGATTTTACGGTACTCTAATTTCAAAACTTTTCTATCATCAACTTCATTTTTCAAAAATAAATCTAAAGAAAACCCGAGTTCACAAAATGCCGCAGCATCCAAGACGTCTTCTCTTTTCCTCCTCTTTTTCCCTTTTTTCAATTCGTTTTCTTCTTTTACTATTCACTTTTTGAACTGGAAAA</canonical_amplicon>
		<polymorphic_amplicon>CACAGAGGGTCCTTCTATTACAGGGGCCCTTCTATTTTTCCAAACCCCTTTCAAAGAGCCCTTGTATTAGAGGGGCCTTTCTATTAAAGGGGCCCTTCTGATACAGATTTTACGGTACTCTAATTTCAAAACTTTTCTATCATCAACTTCATTTTTCAAAAAKAAATCTAAAGAAAACCCGAGTTCACAAAATGCCGCAGCATCCAAGACGTCTTCTCTTTTCCTCCTCTTTTTCCCTTTTTTCAATTCGTTTTCTTCTTTTACTATTCACTTTTTGAACTGGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39490</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>81101</contig_pos>
        <strand>+</strand>
        <context>CGTCTTCTCT[C/T]TTCCTCCTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGAAAACCCGAGTTCACAAAATGCCGCAGCATCCAAGACGTCTTCTCT</left_flank>
        <right_flank>TTCCTCCTCTTTTTCCCTTTTTTCAATTCGTTTTCTTCTTTTACTATTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGTTCGTTTGAATTCCTCACATTATGGATTCTGGTGTCCTGGGGAGGAATGGAAGGTTCAAATCGCGTTGAGAGATATTTCTACGCTGAGTTTGGGGATTTTTAAAAATATAATATATCTTAAAATATAATATAATCTTAAACTTTGAACCTCAAATTTTAGGAGTCTGAGTTTTCTGAAAATTCTGAAACTTCCGAAATCCAAGATTCTGGAAAAGAAAAAGTACGGAAATTTTCTGATTTCAAAACACATTTTGAAAGGGGGGGGGGGGTCCATCTTCACAGAGGGTCCTTCTATTACAGGGGCCCTTCTATTTTTCCAAACCCCTTTCAAAGAGCCCTTGTATTAGAGGGGCCTTTCTATTAAAGGGGCCCTTCTGATACAGATTTTACGGTACTCTAATTTCAAAACTTTTCTATCATCAACTTCATTTTTCAAAAATAAATCTAAAGAAAACCCGAGTTCACAAAATGCCGCAGCATCCAAGACGTCTTCTCTTTTCCTCCTCTTTTTCCCTTTTTTCAATTCGTTTTCTTCTTTTACTATTCACTTTTTGAACTGGAAAAGCTCACTTTTCGTGAAATTACAATTTCCAAGTAGCCGTATTGTATGATTTTCCAGTGTTGCTTCTTGAGTGCTCTGCAGACTTTTCGATTGCACAATTTTCTCCGATTTTTCCGATTTTTCCGATTTTTTGGTTTCAGACTTTTCTACTTTTTCCAGAGTCTTCTTTTCCGATTTCTTCTTCTCCTCCTGGACCAAATTTTTTGATTTTCTGTTTTTTTTTTTGGATGTTCTGAAATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTTTAAGATTATGAGATTATGAGATTCTGAAATTCTGCAGTTCATAACTTCCTGATTTTCTTTTTTTCAGTAAATTTTGAATTACTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTC</canonical>
            <polymorphic>AAGTTCGTTTGAATTCCTCACATTATGGATTCTGGTGTCCTGGGGAGGAATGGAAGGTTCAAATCGCGTTGAGAGATATTTCTACGCTGAGTTTGGGGATTTTTAAAAATATAATATATCTTAAAATATAATATAATCTTAAACTTTGAACCTCAAATTTTAGGAGTCTGAGTTTTCTGAAAATTCTGAAACTTCCGAAATCCAAGATTCTGGAAAAGAAAAAGTACGGAAATTTTCTGATTTCAAAACACATTTTGAAAGGGGGGGGGGGGTCCATCTTCACAGAGGGTCCTTCTATTACAGGGGCCCTTCTATTTTTCCAAACCCCTTTCAAAGAGCCCTTGTATTAGAGGGGCCTTTCTATTAAAGGGGCCCTTCTGATACAGATTTTACGGTACTCTAATTTCAAAACTTTTCTATCATCAACTTCATTTTTCAAAAATAAATCTAAAGAAAACCCGAGTTCACAAAATGCCGCAGCATCCAAGACGTCTTCTCTYTTCCTCCTCTTTTTCCCTTTTTTCAATTCGTTTTCTTCTTTTACTATTCACTTTTTGAACTGGAAAAGCTCACTTTTCGTGAAATTACAATTTCCAAGTAGCCGTATTGTATGATTTTCCAGTGTTGCTTCTTGAGTGCTCTGCAGACTTTTCGATTGCACAATTTTCTCCGATTTTTCCGATTTTTCCGATTTTTTGGTTTCAGACTTTTCTACTTTTTCCAGAGTCTTCTTTTCCGATTTCTTCTTCTCCTCCTGGACCAAATTTTTTGATTTTCTGTTTTTTTTTTTGGATGTTCTGAAATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTTTAAGATTATGAGATTATGAGATTCTGAAATTCTGCAGTTCATAACTTCCTGATTTTCTTTTTTTCAGTAAATTTTGAATTACTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTATCATCAACTTCATTTTTCA</pcr_primer_p1>
		<pcr_primer_p2>ATTGTGCAATCGAAAAGTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTATCATCAACTTCATTTTTCAAAAATAAATCTAAAGAAAACCCGAGTTCACAAAATGCCGCAGCATCCAAGACGTCTTCTCTTTTCCTCCTCTTTTTCCCTTTTTTCAATTCGTTTTCTTCTTTTACTATTCACTTTTTGAACTGGAAAAGCTCACTTTTCGTGAAATTACAATTTCCAAGTAGCCGTATTGTATGATTTTCCAGTGTTGCTTCTTGAGTGCTCTGCAGACTTTTCGATTGCACAAT</canonical_amplicon>
		<polymorphic_amplicon>TTCTATCATCAACTTCATTTTTCAAAAATAAATCTAAAGAAAACCCGAGTTCACAAAATGCCGCAGCATCCAAGACGTCTTCTCTYTTCCTCCTCTTTTTCCCTTTTTTCAATTCGTTTTCTTCTTTTACTATTCACTTTTTGAACTGGAAAAGCTCACTTTTCGTGAAATTACAATTTCCAAGTAGCCGTATTGTATGATTTTCCAGTGTTGCTTCTTGAGTGCTCTGCAGACTTTTCGATTGCACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39491</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>81140</contig_pos>
        <strand>+</strand>
        <context>CGTTTTCTTC[C/T]TTTACTATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACGTCTTCTCTTTTCCTCCTCTTTTTCCCTTTTTTCAATTCGTTTTCTTC</left_flank>
        <right_flank>TTTACTATTCACTTTTTGAACTGGAAAAGCTCACTTTTCGTGAAATTACA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGGGGAGGAATGGAAGGTTCAAATCGCGTTGAGAGATATTTCTACGCTGAGTTTGGGGATTTTTAAAAATATAATATATCTTAAAATATAATATAATCTTAAACTTTGAACCTCAAATTTTAGGAGTCTGAGTTTTCTGAAAATTCTGAAACTTCCGAAATCCAAGATTCTGGAAAAGAAAAAGTACGGAAATTTTCTGATTTCAAAACACATTTTGAAAGGGGGGGGGGGGTCCATCTTCACAGAGGGTCCTTCTATTACAGGGGCCCTTCTATTTTTCCAAACCCCTTTCAAAGAGCCCTTGTATTAGAGGGGCCTTTCTATTAAAGGGGCCCTTCTGATACAGATTTTACGGTACTCTAATTTCAAAACTTTTCTATCATCAACTTCATTTTTCAAAAATAAATCTAAAGAAAACCCGAGTTCACAAAATGCCGCAGCATCCAAGACGTCTTCTCTTTTCCTCCTCTTTTTCCCTTTTTTCAATTCGTTTTCTTCTTTTACTATTCACTTTTTGAACTGGAAAAGCTCACTTTTCGTGAAATTACAATTTCCAAGTAGCCGTATTGTATGATTTTCCAGTGTTGCTTCTTGAGTGCTCTGCAGACTTTTCGATTGCACAATTTTCTCCGATTTTTCCGATTTTTCCGATTTTTTGGTTTCAGACTTTTCTACTTTTTCCAGAGTCTTCTTTTCCGATTTCTTCTTCTCCTCCTGGACCAAATTTTTTGATTTTCTGTTTTTTTTTTTGGATGTTCTGAAATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTTTAAGATTATGAGATTATGAGATTCTGAAATTCTGCAGTTCATAACTTCCTGATTTTCTTTTTTTCAGTAAATTTTGAATTACTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTT</canonical>
            <polymorphic>CTGGGGAGGAATGGAAGGTTCAAATCGCGTTGAGAGATATTTCTACGCTGAGTTTGGGGATTTTTAAAAATATAATATATCTTAAAATATAATATAATCTTAAACTTTGAACCTCAAATTTTAGGAGTCTGAGTTTTCTGAAAATTCTGAAACTTCCGAAATCCAAGATTCTGGAAAAGAAAAAGTACGGAAATTTTCTGATTTCAAAACACATTTTGAAAGGGGGGGGGGGGTCCATCTTCACAGAGGGTCCTTCTATTACAGGGGCCCTTCTATTTTTCCAAACCCCTTTCAAAGAGCCCTTGTATTAGAGGGGCCTTTCTATTAAAGGGGCCCTTCTGATACAGATTTTACGGTACTCTAATTTCAAAACTTTTCTATCATCAACTTCATTTTTCAAAAATAAATCTAAAGAAAACCCGAGTTCACAAAATGCCGCAGCATCCAAGACGTCTTCTCTTTTCCTCCTCTTTTTCCCTTTTTTCAATTCGTTTTCTTCYTTTACTATTCACTTTTTGAACTGGAAAAGCTCACTTTTCGTGAAATTACAATTTCCAAGTAGCCGTATTGTATGATTTTCCAGTGTTGCTTCTTGAGTGCTCTGCAGACTTTTCGATTGCACAATTTTCTCCGATTTTTCCGATTTTTCCGATTTTTTGGTTTCAGACTTTTCTACTTTTTCCAGAGTCTTCTTTTCCGATTTCTTCTTCTCCTCCTGGACCAAATTTTTTGATTTTCTGTTTTTTTTTTTGGATGTTCTGAAATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTTTAAGATTATGAGATTATGAGATTCTGAAATTCTGCAGTTCATAACTTCCTGATTTTCTTTTTTTCAGTAAATTTTGAATTACTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTATCATCAACTTCATTTTTCA</pcr_primer_p1>
		<pcr_primer_p2>ATTGTGCAATCGAAAAGTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTATCATCAACTTCATTTTTCAAAAATAAATCTAAAGAAAACCCGAGTTCACAAAATGCCGCAGCATCCAAGACGTCTTCTCTTTTCCTCCTCTTTTTCCCTTTTTTCAATTCGTTTTCTTCTTTTACTATTCACTTTTTGAACTGGAAAAGCTCACTTTTCGTGAAATTACAATTTCCAAGTAGCCGTATTGTATGATTTTCCAGTGTTGCTTCTTGAGTGCTCTGCAGACTTTTCGATTGCACAAT</canonical_amplicon>
		<polymorphic_amplicon>TTCTATCATCAACTTCATTTTTCAAAAATAAATCTAAAGAAAACCCGAGTTCACAAAATGCCGCAGCATCCAAGACGTCTTCTCTTTTCCTCCTCTTTTTCCCTTTTTTCAATTCGTTTTCTTCYTTTACTATTCACTTTTTGAACTGGAAAAGCTCACTTTTCGTGAAATTACAATTTCCAAGTAGCCGTATTGTATGATTTTCCAGTGTTGCTTCTTGAGTGCTCTGCAGACTTTTCGATTGCACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39492</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>81214</contig_pos>
        <strand>+</strand>
        <context>CGTATTGTAT[C/G]ATTTTCCAGT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAAAAGCTCACTTTTCGTGAAATTACAATTTCCAAGTAGCCGTATTGTAT</left_flank>
        <right_flank>ATTTTCCAGTGTTGCTTCTTGAGTGCTCTGCAGACTTTTCGATTGCACAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATATATCTTAAAATATAATATAATCTTAAACTTTGAACCTCAAATTTTAGGAGTCTGAGTTTTCTGAAAATTCTGAAACTTCCGAAATCCAAGATTCTGGAAAAGAAAAAGTACGGAAATTTTCTGATTTCAAAACACATTTTGAAAGGGGGGGGGGGGTCCATCTTCACAGAGGGTCCTTCTATTACAGGGGCCCTTCTATTTTTCCAAACCCCTTTCAAAGAGCCCTTGTATTAGAGGGGCCTTTCTATTAAAGGGGCCCTTCTGATACAGATTTTACGGTACTCTAATTTCAAAACTTTTCTATCATCAACTTCATTTTTCAAAAATAAATCTAAAGAAAACCCGAGTTCACAAAATGCCGCAGCATCCAAGACGTCTTCTCTTTTCCTCCTCTTTTTCCCTTTTTTCAATTCGTTTTCTTCTTTTACTATTCACTTTTTGAACTGGAAAAGCTCACTTTTCGTGAAATTACAATTTCCAAGTAGCCGTATTGTATGATTTTCCAGTGTTGCTTCTTGAGTGCTCTGCAGACTTTTCGATTGCACAATTTTCTCCGATTTTTCCGATTTTTCCGATTTTTTGGTTTCAGACTTTTCTACTTTTTCCAGAGTCTTCTTTTCCGATTTCTTCTTCTCCTCCTGGACCAAATTTTTTGATTTTCTGTTTTTTTTTTTGGATGTTCTGAAATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTTTAAGATTATGAGATTATGAGATTCTGAAATTCTGCAGTTCATAACTTCCTGATTTTCTTTTTTTCAGTAAATTTTGAATTACTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCT</canonical>
            <polymorphic>ATATATCTTAAAATATAATATAATCTTAAACTTTGAACCTCAAATTTTAGGAGTCTGAGTTTTCTGAAAATTCTGAAACTTCCGAAATCCAAGATTCTGGAAAAGAAAAAGTACGGAAATTTTCTGATTTCAAAACACATTTTGAAAGGGGGGGGGGGGTCCATCTTCACAGAGGGTCCTTCTATTACAGGGGCCCTTCTATTTTTCCAAACCCCTTTCAAAGAGCCCTTGTATTAGAGGGGCCTTTCTATTAAAGGGGCCCTTCTGATACAGATTTTACGGTACTCTAATTTCAAAACTTTTCTATCATCAACTTCATTTTTCAAAAATAAATCTAAAGAAAACCCGAGTTCACAAAATGCCGCAGCATCCAAGACGTCTTCTCTTTTCCTCCTCTTTTTCCCTTTTTTCAATTCGTTTTCTTCTTTTACTATTCACTTTTTGAACTGGAAAAGCTCACTTTTCGTGAAATTACAATTTCCAAGTAGCCGTATTGTATSATTTTCCAGTGTTGCTTCTTGAGTGCTCTGCAGACTTTTCGATTGCACAATTTTCTCCGATTTTTCCGATTTTTCCGATTTTTTGGTTTCAGACTTTTCTACTTTTTCCAGAGTCTTCTTTTCCGATTTCTTCTTCTCCTCCTGGACCAAATTTTTTGATTTTCTGTTTTTTTTTTTGGATGTTCTGAAATTCTGAAATTCTGAAATTCTGAGATTCTGAGATTTTAAGATTATGAGATTATGAGATTCTGAAATTCTGCAGTTCATAACTTCCTGATTTTCTTTTTTTCAGTAAATTTTGAATTACTGAATTTCTGAATTTCCGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTATCATCAACTTCATTTTTCA</pcr_primer_p1>
		<pcr_primer_p2>ATTGTGCAATCGAAAAGTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTCTATCATCAACTTCATTTTTCAAAAATAAATCTAAAGAAAACCCGAGTTCACAAAATGCCGCAGCATCCAAGACGTCTTCTCTTTTCCTCCTCTTTTTCCCTTTTTTCAATTCGTTTTCTTCTTTTACTATTCACTTTTTGAACTGGAAAAGCTCACTTTTCGTGAAATTACAATTTCCAAGTAGCCGTATTGTATGATTTTCCAGTGTTGCTTCTTGAGTGCTCTGCAGACTTTTCGATTGCACAAT</canonical_amplicon>
		<polymorphic_amplicon>TTCTATCATCAACTTCATTTTTCAAAAATAAATCTAAAGAAAACCCGAGTTCACAAAATGCCGCAGCATCCAAGACGTCTTCTCTTTTCCTCCTCTTTTTCCCTTTTTTCAATTCGTTTTCTTCTTTTACTATTCACTTTTTGAACTGGAAAAGCTCACTTTTCGTGAAATTACAATTTCCAAGTAGCCGTATTGTATSATTTTCCAGTGTTGCTTCTTGAGTGCTCTGCAGACTTTTCGATTGCACAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39495</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>103629</contig_pos>
        <strand></strand>
        <context>tggaaacttt[G/T]cattcacaga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTT</left_flank>
        <right_flank>CATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTACGGGCTAGCAACATAGGTGGACTTCGGTGGGCCCAACAAGGGTTTTTCATATGAGAATGAAAAAAAATCCTTTCTACCCGAAAAAAAATCCTCAAGTCAGGAATCTATTCCTGTAATCCGAAAGCTATCTAAAAATTCGAATTACATCCTGAGCCGATCTTCCTAAATTTGAAAAAAATTGAAGCCAATTTCGAGAATCCAAAAAAAACCAACTTACTGTATAACCTACAACCTGTACTTCCGGAGGGCCCTTTTATTTCAGGAACATCACAAGCTTCTGAAATCTAAATAAGAACCCTGGTGATCTCAAAGTTTGATCATTGGCGAGAAAGTGCAAGACAGAAAAGGATCTACAGTACCGGTCAATAAGATATAAAAACACTTTTTTTCCAGTTGATTTTCGGTCATTTTCAGGAGTCTGGAGCTTGGGTAGTCAAGTTTCCGATCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTTGCATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATCTCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGATTGGGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTGAAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTCTGGAGAAACGAGACTTTTTAGACTGAAAAATGTCGAAAAATTCAAAATAGACTTCATCTAAAATCTGGCTACCAGATTTATAAACCATGTTTCCAATGTCTCTAAACAACCAAAATAACCTCTCTCCCGCACTTTTTCCATTAGTAGGCCCGCCTATTCAGTGTTATATTCTATACACGACAAACACACAGTTGAATGAACAACCACACACACGGGCATCTTTTTCTCTCTCTCTCGAAAAACCTGAATAGGTA</canonical>
            <polymorphic>GGTACGGGCTAGCAACATAGGTGGACTTCGGTGGGCCCAACAAGGGTTTTTCATATGAGAATGAAAAAAAATCCTTTCTACCCGAAAAAAAATCCTCAAGTCAGGAATCTATTCCTGTAATCCGAAAGCTATCTAAAAATTCGAATTACATCCTGAGCCGATCTTCCTAAATTTGAAAAAAATTGAAGCCAATTTCGAGAATCCAAAAAAAACCAACTTACTGTATAACCTACAACCTGTACTTCCGGAGGGCCCTTTTATTTCAGGAACATCACAAGCTTCTGAAATCTAAATAAGAACCCTGGTGATCTCAAAGTTTGATCATTGGCGAGAAAGTGCAAGACAGAAAAGGATCTACAGTACCGGTCAATAAGATATAAAAACACTTTTTTTCCAGTTGATTTTCGGTCATTTTCAGGAGTCTGGAGCTTGGGTAGTCAAGTTTCCGATCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTTKCATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATCTCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGATTGGGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTGAAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTCTGGAGAAACGAGACTTTTTAGACTGAAAAATGTCGAAAAATTCAAAATAGACTTCATCTAAAATCTGGCTACCAGATTTATAAACCATGTTTCCAATGTCTCTAAACAACCAAAATAACCTCTCTCCCGCACTTTTTCCATTAGTAGGCCCGCCTATTCAGTGTTATATTCTATACACGACAAACACACAGTTGAATGAACAACCACACACACGGGCATCTTTTTCTCTCTCTCTCGAAAAACCTGAATAGGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 338 128 34</canonical_bands>
                <polymorphic_bands>534 338 128</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGCAAGACAGAAAAGGATCTAC</pcr_primer_p1>
		<pcr_primer_p2>AGTCTAAAAAGTCTCGTTTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>434</pcr_amplicon_size>
		<canonical_amplicon>TGCAAGACAGAAAAGGATCTACAGTACCGGTCAATAAGATATAAAAACACTTTTTTTCCAGTTGATTTTCGGTCATTTTCAGGAGTCTGGAGCTTGGGTAGTCAAGTTTCCGATCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTTGCATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATCTCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGATTGGGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTGAAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTCTGGAGAAACGAGACTTTTTAGACT</canonical_amplicon>
		<polymorphic_amplicon>TGCAAGACAGAAAAGGATCTACAGTACCGGTCAATAAGATATAAAAACACTTTTTTTCCAGTTGATTTTCGGTCATTTTCAGGAGTCTGGAGCTTGGGTAGTCAAGTTTCCGATCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTTKCATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATCTCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGATTGGGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTGAAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTCTGGAGAAACGAGACTTTTTAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39496</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>103688</contig_pos>
        <strand></strand>
        <context>gaaagtcatc[T/C]ctttctggct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATC</left_flank>
        <right_flank>CTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGAT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATGAAAAAAAATCCTTTCTACCCGAAAAAAAATCCTCAAGTCAGGAATCTATTCCTGTAATCCGAAAGCTATCTAAAAATTCGAATTACATCCTGAGCCGATCTTCCTAAATTTGAAAAAAATTGAAGCCAATTTCGAGAATCCAAAAAAAACCAACTTACTGTATAACCTACAACCTGTACTTCCGGAGGGCCCTTTTATTTCAGGAACATCACAAGCTTCTGAAATCTAAATAAGAACCCTGGTGATCTCAAAGTTTGATCATTGGCGAGAAAGTGCAAGACAGAAAAGGATCTACAGTACCGGTCAATAAGATATAAAAACACTTTTTTTCCAGTTGATTTTCGGTCATTTTCAGGAGTCTGGAGCTTGGGTAGTCAAGTTTCCGATCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTTGCATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATCTCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGATTGGGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTGAAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTCTGGAGAAACGAGACTTTTTAGACTGAAAAATGTCGAAAAATTCAAAATAGACTTCATCTAAAATCTGGCTACCAGATTTATAAACCATGTTTCCAATGTCTCTAAACAACCAAAATAACCTCTCTCCCGCACTTTTTCCATTAGTAGGCCCGCCTATTCAGTGTTATATTCTATACACGACAAACACACAGTTGAATGAACAACCACACACACGGGCATCTTTTTCTCTCTCTCTCGAAAAACCTGAATAGGTACCGAGAGAGAGAGGACTCAATTATGTGTTAGTTAGGGTTTCTGAAGAGGTAGGGGGCTA</canonical>
            <polymorphic>AATGAAAAAAAATCCTTTCTACCCGAAAAAAAATCCTCAAGTCAGGAATCTATTCCTGTAATCCGAAAGCTATCTAAAAATTCGAATTACATCCTGAGCCGATCTTCCTAAATTTGAAAAAAATTGAAGCCAATTTCGAGAATCCAAAAAAAACCAACTTACTGTATAACCTACAACCTGTACTTCCGGAGGGCCCTTTTATTTCAGGAACATCACAAGCTTCTGAAATCTAAATAAGAACCCTGGTGATCTCAAAGTTTGATCATTGGCGAGAAAGTGCAAGACAGAAAAGGATCTACAGTACCGGTCAATAAGATATAAAAACACTTTTTTTCCAGTTGATTTTCGGTCATTTTCAGGAGTCTGGAGCTTGGGTAGTCAAGTTTCCGATCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTTGCATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATCYCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGATTGGGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTGAAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTCTGGAGAAACGAGACTTTTTAGACTGAAAAATGTCGAAAAATTCAAAATAGACTTCATCTAAAATCTGGCTACCAGATTTATAAACCATGTTTCCAATGTCTCTAAACAACCAAAATAACCTCTCTCCCGCACTTTTTCCATTAGTAGGCCCGCCTATTCAGTGTTATATTCTATACACGACAAACACACAGTTGAATGAACAACCACACACACGGGCATCTTTTTCTCTCTCTCTCGAAAAACCTGAATAGGTACCGAGAGAGAGAGGACTCAATTATGTGTTAGTTAGGGTTTCTGAAGAGGTAGGGGGCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCAAGACAGAAAAGGATCTAC</pcr_primer_p1>
		<pcr_primer_p2>AGTCTAAAAAGTCTCGTTTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>434</pcr_amplicon_size>
		<canonical_amplicon>TGCAAGACAGAAAAGGATCTACAGTACCGGTCAATAAGATATAAAAACACTTTTTTTCCAGTTGATTTTCGGTCATTTTCAGGAGTCTGGAGCTTGGGTAGTCAAGTTTCCGATCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTTGCATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATCTCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGATTGGGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTGAAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTCTGGAGAAACGAGACTTTTTAGACT</canonical_amplicon>
		<polymorphic_amplicon>TGCAAGACAGAAAAGGATCTACAGTACCGGTCAATAAGATATAAAAACACTTTTTTTCCAGTTGATTTTCGGTCATTTTCAGGAGTCTGGAGCTTGGGTAGTCAAGTTTCCGATCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTTGCATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATCYCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGATTGGGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTGAAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTCTGGAGAAACGAGACTTTTTAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39497</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>103836</contig_pos>
        <strand>+</strand>
        <context>tATATATTTG[C/T]AAAAAAATTT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTG</left_flank>
        <right_flank>AAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTCTGGAGAAACGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAACCAACTTACTGTATAACCTACAACCTGTACTTCCGGAGGGCCCTTTTATTTCAGGAACATCACAAGCTTCTGAAATCTAAATAAGAACCCTGGTGATCTCAAAGTTTGATCATTGGCGAGAAAGTGCAAGACAGAAAAGGATCTACAGTACCGGTCAATAAGATATAAAAACACTTTTTTTCCAGTTGATTTTCGGTCATTTTCAGGAGTCTGGAGCTTGGGTAGTCAAGTTTCCGATCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTTGCATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATCTCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGATTGGGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTGAAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTCTGGAGAAACGAGACTTTTTAGACTGAAAAATGTCGAAAAATTCAAAATAGACTTCATCTAAAATCTGGCTACCAGATTTATAAACCATGTTTCCAATGTCTCTAAACAACCAAAATAACCTCTCTCCCGCACTTTTTCCATTAGTAGGCCCGCCTATTCAGTGTTATATTCTATACACGACAAACACACAGTTGAATGAACAACCACACACACGGGCATCTTTTTCTCTCTCTCTCGAAAAACCTGAATAGGTACCGAGAGAGAGAGGACTCAATTATGTGTTAGTTAGGGTTTCTGAAGAGGTAGGGGGCTATTTGGTGACCCCCATATTGTTGTGAAAAGTGGGGATATAGAGAAGAGAGGAAGGCAAAGGACACATTTATAATTGCTCTTAGTTTTGGGAACGGCCCCGGGATACATACAGTTCCCTAATTGAGTCTACATGCATATACACCTCGCCA</canonical>
            <polymorphic>AAAAACCAACTTACTGTATAACCTACAACCTGTACTTCCGGAGGGCCCTTTTATTTCAGGAACATCACAAGCTTCTGAAATCTAAATAAGAACCCTGGTGATCTCAAAGTTTGATCATTGGCGAGAAAGTGCAAGACAGAAAAGGATCTACAGTACCGGTCAATAAGATATAAAAACACTTTTTTTCCAGTTGATTTTCGGTCATTTTCAGGAGTCTGGAGCTTGGGTAGTCAAGTTTCCGATCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTTGCATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATCTCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGATTGGGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTGYAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTCTGGAGAAACGAGACTTTTTAGACTGAAAAATGTCGAAAAATTCAAAATAGACTTCATCTAAAATCTGGCTACCAGATTTATAAACCATGTTTCCAATGTCTCTAAACAACCAAAATAACCTCTCTCCCGCACTTTTTCCATTAGTAGGCCCGCCTATTCAGTGTTATATTCTATACACGACAAACACACAGTTGAATGAACAACCACACACACGGGCATCTTTTTCTCTCTCTCTCGAAAAACCTGAATAGGTACCGAGAGAGAGAGGACTCAATTATGTGTTAGTTAGGGTTTCTGAAGAGGTAGGGGGCTATTTGGTGACCCCCATATTGTTGTGAAAAGTGGGGATATAGAGAAGAGAGGAAGGCAAAGGACACATTTATAATTGCTCTTAGTTTTGGGAACGGCCCCGGGATACATACAGTTCCCTAATTGAGTCTACATGCATATACACCTCGCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCAAGACAGAAAAGGATCTAC</pcr_primer_p1>
		<pcr_primer_p2>AGTCTAAAAAGTCTCGTTTCTCC</pcr_primer_p2>
		<pcr_amplicon_size>434</pcr_amplicon_size>
		<canonical_amplicon>TGCAAGACAGAAAAGGATCTACAGTACCGGTCAATAAGATATAAAAACACTTTTTTTCCAGTTGATTTTCGGTCATTTTCAGGAGTCTGGAGCTTGGGTAGTCAAGTTTCCGATCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTTGCATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATCTCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGATTGGGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTGAAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTCTGGAGAAACGAGACTTTTTAGACT</canonical_amplicon>
		<polymorphic_amplicon>TGCAAGACAGAAAAGGATCTACAGTACCGGTCAATAAGATATAAAAACACTTTTTTTCCAGTTGATTTTCGGTCATTTTCAGGAGTCTGGAGCTTGGGTAGTCAAGTTTCCGATCGTTTTGAAAACTTTGCAAGTTGTAAAACTGACCGAGATTGGAAACTTTGCATTCACAGATTTCGAATTCCTGGGTTTTCAGCTATTTGCCGATTTCTGAAAGTCATCTCTTTCTGGCTTGTTTTTGTGCTGAAAACGTCAAAAAAATTTCAAAGTGATTGGGACTTTGGCATCGGCGCTCCAGAGCACTGAAAACGCTCAAAGTCATCTGAAAAATACATTTCTGTATATATTATTGACCGATATTATATATTTGYAAAAAAATTTAATAGCTGACCGCGCTTTTTATATCTTTCTGGAGAAACGAGACTTTTTAGACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39498</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>105886</contig_pos>
        <strand></strand>
        <context>CAGTGTctgt[C/T]aaayttccga</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGT</left_flank>
        <right_flank>AAACTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTTCCGATAGAGAGAATTAATATGAGAATATATATATGAATCCGACGGATCGTTGTCATAAAAACTTTTGATCCACCTCCTCCCCACGGATTTCATATTATTAAATGGGCGAGAGAGTGAAGAGACGCAGACACGAAAAACCGAGGAATCGGTAGTTGTAGAGATAGATAATAATGATGATGATGATAGAAATGAAATGTGTTTGGGAGGAGAAACTAGATTTCGTTCGCCCATCACCACACACTCATGATTCGAAATAGGAAGAGAGAAACATTTCGAATTGTTATTATGATGATGATGGGGAAATGGTTATGTATGTTCAGATGGCTGGAATTGTGAAAAATGTAGAAGGATTATGGTATTACCTGTGGTGTGGATTAGTTACAGTGAAGAGAGGAGATCAGGGGGGAACATATAGCCCACCGTAATCTACCCAAAGTACCCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTCAAACTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAATGAGGTGATTCGCAGTTAGTAAGTTAGACATGTGGACCGGAAGAGACCATTAAAAATTGTGAATCGTGAATCTTGGAAGAAAGAAAATGACGACTTTTCTTAAAAATCAAAAGATTATTGAAAAAAATTAGAATTGCCCTTTTTCCATAGAACGTTACTTTTGCAGAATTGCAATCATTGACTTCATTAGCGATGTTGAATTTGTATAGATTGGGAAATTTTGAAATTTGAAATTTGAAGTTTGCTAAAAGTTTTGTGTTTCTGGGGGAGAAAAAAGGAAAAACACCATGACCACCTTACGGGTATCCATGAGCACGGGACAAAGTGAGCAAGGACATTCAAAGAAAGGGTCAAGAAAAATTTGAAATACGCGC</canonical>
            <polymorphic>CCTTCCGATAGAGAGAATTAATATGAGAATATATATATGAATCCGACGGATCGTTGTCATAAAAACTTTTGATCCACCTCCTCCCCACGGATTTCATATTATTAAATGGGCGAGAGAGTGAAGAGACGCAGACACGAAAAACCGAGGAATCGGTAGTTGTAGAGATAGATAATAATGATGATGATGATAGAAATGAAATGTGTTTGGGAGGAGAAACTAGATTTCGTTCGCCCATCACCACACACTCATGATTCGAAATAGGAAGAGAGAAACATTTCGAATTGTTATTATGATGATGATGGGGAAATGGTTATGTATGTTCAGATGGCTGGAATTGTGAAAAATGTAGAAGGATTATGGTATTACCTGTGGTGTGGATTAGTTACAGTGAAGAGAGGAGATCAGGGGGGAACATATAGCCCACCGTAATCTACCCAAAGTACCCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTYAAACTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAATGAGGTGATTCGCAGTTAGTAAGTTAGACATGTGGACCGGAAGAGACCATTAAAAATTGTGAATCGTGAATCTTGGAAGAAAGAAAATGACGACTTTTCTTAAAAATCAAAAGATTATTGAAAAAAATTAGAATTGCCCTTTTTCCATAGAACGTTACTTTTGCAGAATTGCAATCATTGACTTCATTAGCGATGTTGAATTTGTATAGATTGGGAAATTTTGAAATTTGAAATTTGAAGTTTGCTAAAAGTTTTGTGTTTCTGGGGGAGAAAAAAGGAAAAACACCATGACCACCTTACGGGTATCCATGAGCACGGGACAAAGTGAGCAAGGACATTCAAAGAAAGGGTCAAGAAAAATTTGAAATACGCGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTACAGTGAAGAGAGGAGATCA</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAATAGCTAAGCCAGAATA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GTTACAGTGAAGAGAGGAGATCAGGGGGGAACATATAGCCCACCGTAATCTACCCAAAGTACCCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTCAAACTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTTACAGTGAAGAGAGGAGATCAGGGGGGAACATATAGCCCACCGTAATCTACCCAAAGTACCCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTYAAACTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39499</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>105890</contig_pos>
        <strand></strand>
        <context>GTctgtyaaa[C/T]ttccgatgac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTCAAA</left_flank>
        <right_flank>TTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGATTGAT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGATAGAGAGAATTAATATGAGAATATATATATGAATCCGACGGATCGTTGTCATAAAAACTTTTGATCCACCTCCTCCCCACGGATTTCATATTATTAAATGGGCGAGAGAGTGAAGAGACGCAGACACGAAAAACCGAGGAATCGGTAGTTGTAGAGATAGATAATAATGATGATGATGATAGAAATGAAATGTGTTTGGGAGGAGAAACTAGATTTCGTTCGCCCATCACCACACACTCATGATTCGAAATAGGAAGAGAGAAACATTTCGAATTGTTATTATGATGATGATGGGGAAATGGTTATGTATGTTCAGATGGCTGGAATTGTGAAAAATGTAGAAGGATTATGGTATTACCTGTGGTGTGGATTAGTTACAGTGAAGAGAGGAGATCAGGGGGGAACATATAGCCCACCGTAATCTACCCAAAGTACCCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTCAAACTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAATGAGGTGATTCGCAGTTAGTAAGTTAGACATGTGGACCGGAAGAGACCATTAAAAATTGTGAATCGTGAATCTTGGAAGAAAGAAAATGACGACTTTTCTTAAAAATCAAAAGATTATTGAAAAAAATTAGAATTGCCCTTTTTCCATAGAACGTTACTTTTGCAGAATTGCAATCATTGACTTCATTAGCGATGTTGAATTTGTATAGATTGGGAAATTTTGAAATTTGAAATTTGAAGTTTGCTAAAAGTTTTGTGTTTCTGGGGGAGAAAAAAGGAAAAACACCATGACCACCTTACGGGTATCCATGAGCACGGGACAAAGTGAGCAAGGACATTCAAAGAAAGGGTCAAGAAAAATTTGAAATACGCGCGATA</canonical>
            <polymorphic>CCGATAGAGAGAATTAATATGAGAATATATATATGAATCCGACGGATCGTTGTCATAAAAACTTTTGATCCACCTCCTCCCCACGGATTTCATATTATTAAATGGGCGAGAGAGTGAAGAGACGCAGACACGAAAAACCGAGGAATCGGTAGTTGTAGAGATAGATAATAATGATGATGATGATAGAAATGAAATGTGTTTGGGAGGAGAAACTAGATTTCGTTCGCCCATCACCACACACTCATGATTCGAAATAGGAAGAGAGAAACATTTCGAATTGTTATTATGATGATGATGGGGAAATGGTTATGTATGTTCAGATGGCTGGAATTGTGAAAAATGTAGAAGGATTATGGTATTACCTGTGGTGTGGATTAGTTACAGTGAAGAGAGGAGATCAGGGGGGAACATATAGCCCACCGTAATCTACCCAAAGTACCCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTCAAAYTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAATGAGGTGATTCGCAGTTAGTAAGTTAGACATGTGGACCGGAAGAGACCATTAAAAATTGTGAATCGTGAATCTTGGAAGAAAGAAAATGACGACTTTTCTTAAAAATCAAAAGATTATTGAAAAAAATTAGAATTGCCCTTTTTCCATAGAACGTTACTTTTGCAGAATTGCAATCATTGACTTCATTAGCGATGTTGAATTTGTATAGATTGGGAAATTTTGAAATTTGAAATTTGAAGTTTGCTAAAAGTTTTGTGTTTCTGGGGGAGAAAAAAGGAAAAACACCATGACCACCTTACGGGTATCCATGAGCACGGGACAAAGTGAGCAAGGACATTCAAAGAAAGGGTCAAGAAAAATTTGAAATACGCGCGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTACAGTGAAGAGAGGAGATCA</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAATAGCTAAGCCAGAATA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GTTACAGTGAAGAGAGGAGATCAGGGGGGAACATATAGCCCACCGTAATCTACCCAAAGTACCCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTCAAACTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTTACAGTGAAGAGAGGAGATCAGGGGGGAACATATAGCCCACCGTAATCTACCCAAAGTACCCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTCAAAYTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39500</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>105913</contig_pos>
        <strand></strand>
        <context>tgaaaattcg[A/G]gagggtgtaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACAAGTCATTATACAGTGTCTGTCAAACTTCCGATGACTTTGAAAATTCG</left_flank>
        <right_flank>GAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATATATATATGAATCCGACGGATCGTTGTCATAAAAACTTTTGATCCACCTCCTCCCCACGGATTTCATATTATTAAATGGGCGAGAGAGTGAAGAGACGCAGACACGAAAAACCGAGGAATCGGTAGTTGTAGAGATAGATAATAATGATGATGATGATAGAAATGAAATGTGTTTGGGAGGAGAAACTAGATTTCGTTCGCCCATCACCACACACTCATGATTCGAAATAGGAAGAGAGAAACATTTCGAATTGTTATTATGATGATGATGGGGAAATGGTTATGTATGTTCAGATGGCTGGAATTGTGAAAAATGTAGAAGGATTATGGTATTACCTGTGGTGTGGATTAGTTACAGTGAAGAGAGGAGATCAGGGGGGAACATATAGCCCACCGTAATCTACCCAAAGTACCCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTCAAACTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAATGAGGTGATTCGCAGTTAGTAAGTTAGACATGTGGACCGGAAGAGACCATTAAAAATTGTGAATCGTGAATCTTGGAAGAAAGAAAATGACGACTTTTCTTAAAAATCAAAAGATTATTGAAAAAAATTAGAATTGCCCTTTTTCCATAGAACGTTACTTTTGCAGAATTGCAATCATTGACTTCATTAGCGATGTTGAATTTGTATAGATTGGGAAATTTTGAAATTTGAAATTTGAAGTTTGCTAAAAGTTTTGTGTTTCTGGGGGAGAAAAAAGGAAAAACACCATGACCACCTTACGGGTATCCATGAGCACGGGACAAAGTGAGCAAGGACATTCAAAGAAAGGGTCAAGAAAAATTTGAAATACGCGCGATACTTTCTAAGGGGGTCCTAGAAAA</canonical>
            <polymorphic>AATATATATATGAATCCGACGGATCGTTGTCATAAAAACTTTTGATCCACCTCCTCCCCACGGATTTCATATTATTAAATGGGCGAGAGAGTGAAGAGACGCAGACACGAAAAACCGAGGAATCGGTAGTTGTAGAGATAGATAATAATGATGATGATGATAGAAATGAAATGTGTTTGGGAGGAGAAACTAGATTTCGTTCGCCCATCACCACACACTCATGATTCGAAATAGGAAGAGAGAAACATTTCGAATTGTTATTATGATGATGATGGGGAAATGGTTATGTATGTTCAGATGGCTGGAATTGTGAAAAATGTAGAAGGATTATGGTATTACCTGTGGTGTGGATTAGTTACAGTGAAGAGAGGAGATCAGGGGGGAACATATAGCCCACCGTAATCTACCCAAAGTACCCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTCAAACTTCCGATGACTTTGAAAATTCGRGAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAATGAGGTGATTCGCAGTTAGTAAGTTAGACATGTGGACCGGAAGAGACCATTAAAAATTGTGAATCGTGAATCTTGGAAGAAAGAAAATGACGACTTTTCTTAAAAATCAAAAGATTATTGAAAAAAATTAGAATTGCCCTTTTTCCATAGAACGTTACTTTTGCAGAATTGCAATCATTGACTTCATTAGCGATGTTGAATTTGTATAGATTGGGAAATTTTGAAATTTGAAATTTGAAGTTTGCTAAAAGTTTTGTGTTTCTGGGGGAGAAAAAAGGAAAAACACCATGACCACCTTACGGGTATCCATGAGCACGGGACAAAGTGAGCAAGGACATTCAAAGAAAGGGTCAAGAAAAATTTGAAATACGCGCGATACTTTCTAAGGGGGTCCTAGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>449 247 227 53 24</canonical_bands>
                <polymorphic_bands>449 300 227 24</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTTACAGTGAAGAGAGGAGATCA</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAATAGCTAAGCCAGAATA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GTTACAGTGAAGAGAGGAGATCAGGGGGGAACATATAGCCCACCGTAATCTACCCAAAGTACCCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTCAAACTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTTACAGTGAAGAGAGGAGATCAGGGGGGAACATATAGCCCACCGTAATCTACCCAAAGTACCCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTCAAACTTCCGATGACTTTGAAAATTCGRGAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39501</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>105935</contig_pos>
        <strand></strand>
        <context>acagacctag[A/T]ttgataattt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCAAACTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAG</left_flank>
        <right_flank>TTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGTTGTCATAAAAACTTTTGATCCACCTCCTCCCCACGGATTTCATATTATTAAATGGGCGAGAGAGTGAAGAGACGCAGACACGAAAAACCGAGGAATCGGTAGTTGTAGAGATAGATAATAATGATGATGATGATAGAAATGAAATGTGTTTGGGAGGAGAAACTAGATTTCGTTCGCCCATCACCACACACTCATGATTCGAAATAGGAAGAGAGAAACATTTCGAATTGTTATTATGATGATGATGGGGAAATGGTTATGTATGTTCAGATGGCTGGAATTGTGAAAAATGTAGAAGGATTATGGTATTACCTGTGGTGTGGATTAGTTACAGTGAAGAGAGGAGATCAGGGGGGAACATATAGCCCACCGTAATCTACCCAAAGTACCCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTCAAACTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAATGAGGTGATTCGCAGTTAGTAAGTTAGACATGTGGACCGGAAGAGACCATTAAAAATTGTGAATCGTGAATCTTGGAAGAAAGAAAATGACGACTTTTCTTAAAAATCAAAAGATTATTGAAAAAAATTAGAATTGCCCTTTTTCCATAGAACGTTACTTTTGCAGAATTGCAATCATTGACTTCATTAGCGATGTTGAATTTGTATAGATTGGGAAATTTTGAAATTTGAAATTTGAAGTTTGCTAAAAGTTTTGTGTTTCTGGGGGAGAAAAAAGGAAAAACACCATGACCACCTTACGGGTATCCATGAGCACGGGACAAAGTGAGCAAGGACATTCAAAGAAAGGGTCAAGAAAAATTTGAAATACGCGCGATACTTTCTAAGGGGGTCCTAGAAAAATAACTATTTCAATGTGGTCCA</canonical>
            <polymorphic>ATCGTTGTCATAAAAACTTTTGATCCACCTCCTCCCCACGGATTTCATATTATTAAATGGGCGAGAGAGTGAAGAGACGCAGACACGAAAAACCGAGGAATCGGTAGTTGTAGAGATAGATAATAATGATGATGATGATAGAAATGAAATGTGTTTGGGAGGAGAAACTAGATTTCGTTCGCCCATCACCACACACTCATGATTCGAAATAGGAAGAGAGAAACATTTCGAATTGTTATTATGATGATGATGGGGAAATGGTTATGTATGTTCAGATGGCTGGAATTGTGAAAAATGTAGAAGGATTATGGTATTACCTGTGGTGTGGATTAGTTACAGTGAAGAGAGGAGATCAGGGGGGAACATATAGCCCACCGTAATCTACCCAAAGTACCCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTCAAACTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGWTTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAATGAGGTGATTCGCAGTTAGTAAGTTAGACATGTGGACCGGAAGAGACCATTAAAAATTGTGAATCGTGAATCTTGGAAGAAAGAAAATGACGACTTTTCTTAAAAATCAAAAGATTATTGAAAAAAATTAGAATTGCCCTTTTTCCATAGAACGTTACTTTTGCAGAATTGCAATCATTGACTTCATTAGCGATGTTGAATTTGTATAGATTGGGAAATTTTGAAATTTGAAATTTGAAGTTTGCTAAAAGTTTTGTGTTTCTGGGGGAGAAAAAAGGAAAAACACCATGACCACCTTACGGGTATCCATGAGCACGGGACAAAGTGAGCAAGGACATTCAAAGAAAGGGTCAAGAAAAATTTGAAATACGCGCGATACTTTCTAAGGGGGTCCTAGAAAAATAACTATTTCAATGTGGTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTACAGTGAAGAGAGGAGATCA</pcr_primer_p1>
		<pcr_primer_p2>TTTTGAATAGCTAAGCCAGAATA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GTTACAGTGAAGAGAGGAGATCAGGGGGGAACATATAGCCCACCGTAATCTACCCAAAGTACCCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTCAAACTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGATTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAA</canonical_amplicon>
		<polymorphic_amplicon>GTTACAGTGAAGAGAGGAGATCAGGGGGGAACATATAGCCCACCGTAATCTACCCAAAGTACCCTAATCTGAATGTGGTTGTTAGTTTGAAAGCCACAAGTCATTATACAGTGTCTGTCAAACTTCCGATGACTTTGAAAATTCGAGAGGGTGTAAAACAGACCTAGWTTGATAATTTTGCATTCACAGAATTTCTCGAAACAAAAAATTTTGAAAGCATTCTATTCTGGCTTAGCTATTCAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39502</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>110642</contig_pos>
        <strand></strand>
        <context>tttgggactc[T/G]tggccgagtt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GGTAACCCAGATACGGTATCTTTCTTCCCAACTTAAAAAATTTGGGACTC</left_flank>
        <right_flank>TGGCCGAGTTTTTGGAATTTTTAGGCCACCAAAAACAAAATTGTGTTAAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGGCAGCAGCACATGAAGTGCGCCAAGTCGACGTTGACTCCGGCACTTTGAGCCCAATTATCTCGGTTTCCATGAGAGATGTCAAAAAGTGGTAAACTAATAAACCTTTATTGTAATATTCTTAACATTTTATCAGTTGACACATTTTTGAAATTTGAACCGAGATAACTGAGTTCAAACTTGGCAGTGTGGGTGCCCTTTTATTACAGGTTTTACGGTATGCTAAATTTTATCGCATAGGCTAAAAAGTTTTTCAAGGTTATCAAACAAAATAGAGCTTCAATTTTGTAGTTGACAACTTTTTTATAACTTTTTTGGTTTTCGAGATATGCGCCTTTAAAAGAACCGTAACCTGAAAATGGAAAAGAAATTGTTGATAATCATATTGCTCGCATTAGAAATCTGTGAATTATCATGAACCTGTCAATCTATCAGGATATTTTTTTATGGTAACCCAGATACGGTATCTTTCTTCCCAACTTAAAAAATTTGGGACTCTTGGCCGAGTTTTTGGAATTTTTAGGCCACCAAAAACAAAATTGTGTTAAGTAGGTTTTATTGACTGAACTTTGAGTTCAATTATCTCAATTGCCATGAAAAACATCAAAATTTTGTCCACTGATAAAATGTTGATGATATTATGATAAACATTTCATTAGTTGACAAATATTTGATATATGTTACGGGAAATAAGATAATTGAGCTCGAAGCTTTTACATTCTCGTAAATTCTCTGGTAGCAGCTGACCCTATACGTGCTCTTTGAGCTTAATTATCTCAATTCCTGTAAGAAATATCAAAATTTTGTCAACTGATAAAATGCTCATCATAATATCATCCACATTTTATCAGTTGACAGTTTTTTTGATATCTTTTACAGAAATCGAAATAATTGAACTCAAGTAGGGGTACTCCATCGGATGGCAGCAGTCAACGTCGGCCATTTAGCTCAGGTGAGAGCGATCCATTTTTAGCTCAATTATCTCAATGTCTGTAGAAG</canonical>
            <polymorphic>GCGGCAGCAGCACATGAAGTGCGCCAAGTCGACGTTGACTCCGGCACTTTGAGCCCAATTATCTCGGTTTCCATGAGAGATGTCAAAAAGTGGTAAACTAATAAACCTTTATTGTAATATTCTTAACATTTTATCAGTTGACACATTTTTGAAATTTGAACCGAGATAACTGAGTTCAAACTTGGCAGTGTGGGTGCCCTTTTATTACAGGTTTTACGGTATGCTAAATTTTATCGCATAGGCTAAAAAGTTTTTCAAGGTTATCAAACAAAATAGAGCTTCAATTTTGTAGTTGACAACTTTTTTATAACTTTTTTGGTTTTCGAGATATGCGCCTTTAAAAGAACCGTAACCTGAAAATGGAAAAGAAATTGTTGATAATCATATTGCTCGCATTAGAAATCTGTGAATTATCATGAACCTGTCAATCTATCAGGATATTTTTTTATGGTAACCCAGATACGGTATCTTTCTTCCCAACTTAAAAAATTTGGGACTCKTGGCCGAGTTTTTGGAATTTTTAGGCCACCAAAAACAAAATTGTGTTAAGTAGGTTTTATTGACTGAACTTTGAGTTCAATTATCTCAATTGCCATGAAAAACATCAAAATTTTGTCCACTGATAAAATGTTGATGATATTATGATAAACATTTCATTAGTTGACAAATATTTGATATATGTTACGGGAAATAAGATAATTGAGCTCGAAGCTTTTACATTCTCGTAAATTCTCTGGTAGCAGCTGACCCTATACGTGCTCTTTGAGCTTAATTATCTCAATTCCTGTAAGAAATATCAAAATTTTGTCAACTGATAAAATGCTCATCATAATATCATCCACATTTTATCAGTTGACAGTTTTTTTGATATCTTTTACAGAAATCGAAATAATTGAACTCAAGTAGGGGTACTCCATCGGATGGCAGCAGTCAACGTCGGCCATTTAGCTCAGGTGAGAGCGATCCATTTTTAGCTCAATTATCTCAATGTCTGTAGAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTATGGTAACCCAGATACG</pcr_primer_p1>
		<pcr_primer_p2>CCAGAGAATTTACGAGAATGTAA</pcr_primer_p2>
		<pcr_amplicon_size>295</pcr_amplicon_size>
		<canonical_amplicon>TTTTTATGGTAACCCAGATACGGTATCTTTCTTCCCAACTTAAAAAATTTGGGACTCTTGGCCGAGTTTTTGGAATTTTTAGGCCACCAAAAACAAAATTGTGTTAAGTAGGTTTTATTGACTGAACTTTGAGTTCAATTATCTCAATTGCCATGAAAAACATCAAAATTTTGTCCACTGATAAAATGTTGATGATATTATGATAAACATTTCATTAGTTGACAAATATTTGATATATGTTACGGGAAATAAGATAATTGAGCTCGAAGCTTTTACATTCTCGTAAATTCTCTGG</canonical_amplicon>
		<polymorphic_amplicon>TTTTTATGGTAACCCAGATACGGTATCTTTCTTCCCAACTTAAAAAATTTGGGACTCKTGGCCGAGTTTTTGGAATTTTTAGGCCACCAAAAACAAAATTGTGTTAAGTAGGTTTTATTGACTGAACTTTGAGTTCAATTATCTCAATTGCCATGAAAAACATCAAAATTTTGTCCACTGATAAAATGTTGATGATATTATGATAAACATTTCATTAGTTGACAAATATTTGATATATGTTACGGGAAATAAGATAATTGAGCTCGAAGCTTTTACATTCTCGTAAATTCTCTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39503</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>110915</contig_pos>
        <strand></strand>
        <context>ttgagcttaa[T/C]tatctcaatt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCGTAAATTCTCTGGTAGCAGCTGACCCTATACGTGCTCTTTGAGCTTAA</left_flank>
        <right_flank>TATCTCAATTCCTGTAAGAAATATCAAAATTTTGTCAACTGATAAAATGC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAGAGCTTCAATTTTGTAGTTGACAACTTTTTTATAACTTTTTTGGTTTTCGAGATATGCGCCTTTAAAAGAACCGTAACCTGAAAATGGAAAAGAAATTGTTGATAATCATATTGCTCGCATTAGAAATCTGTGAATTATCATGAACCTGTCAATCTATCAGGATATTTTTTTATGGTAACCCAGATACGGTATCTTTCTTCCCAACTTAAAAAATTTGGGACTCTTGGCCGAGTTTTTGGAATTTTTAGGCCACCAAAAACAAAATTGTGTTAAGTAGGTTTTATTGACTGAACTTTGAGTTCAATTATCTCAATTGCCATGAAAAACATCAAAATTTTGTCCACTGATAAAATGTTGATGATATTATGATAAACATTTCATTAGTTGACAAATATTTGATATATGTTACGGGAAATAAGATAATTGAGCTCGAAGCTTTTACATTCTCGTAAATTCTCTGGTAGCAGCTGACCCTATACGTGCTCTTTGAGCTTAATTATCTCAATTCCTGTAAGAAATATCAAAATTTTGTCAACTGATAAAATGCTCATCATAATATCATCCACATTTTATCAGTTGACAGTTTTTTTGATATCTTTTACAGAAATCGAAATAATTGAACTCAAGTAGGGGTACTCCATCGGATGGCAGCAGTCAACGTCGGCCATTTAGCTCAGGTGAGAGCGATCCATTTTTAGCTCAATTATCTCAATGTCTGTAGAAGATAGCAAAAACGTGTCAACTAAAAAAATGTTAATGACATTATGATAAACATTTTATCAGTTGACAAAATTTTGATATCTTTTACAGAGATTGAGATAATTGAGCTCAACGCCTAAGCCAAATTTTGGTTGAGGATTACCTACAGTACCTCGGTATTTCTTAAAAACCCTTCTAGATTTATAGCAAAAGATATATATTTAAAATCGTCGTGTTATTCATTTTTCAAAAAAAAAATCGTGTCAGGGGGGACAAAACAAAACAAAACCTAATGAGA</canonical>
            <polymorphic>TAGAGCTTCAATTTTGTAGTTGACAACTTTTTTATAACTTTTTTGGTTTTCGAGATATGCGCCTTTAAAAGAACCGTAACCTGAAAATGGAAAAGAAATTGTTGATAATCATATTGCTCGCATTAGAAATCTGTGAATTATCATGAACCTGTCAATCTATCAGGATATTTTTTTATGGTAACCCAGATACGGTATCTTTCTTCCCAACTTAAAAAATTTGGGACTCTTGGCCGAGTTTTTGGAATTTTTAGGCCACCAAAAACAAAATTGTGTTAAGTAGGTTTTATTGACTGAACTTTGAGTTCAATTATCTCAATTGCCATGAAAAACATCAAAATTTTGTCCACTGATAAAATGTTGATGATATTATGATAAACATTTCATTAGTTGACAAATATTTGATATATGTTACGGGAAATAAGATAATTGAGCTCGAAGCTTTTACATTCTCGTAAATTCTCTGGTAGCAGCTGACCCTATACGTGCTCTTTGAGCTTAAYTATCTCAATTCCTGTAAGAAATATCAAAATTTTGTCAACTGATAAAATGCTCATCATAATATCATCCACATTTTATCAGTTGACAGTTTTTTTGATATCTTTTACAGAAATCGAAATAATTGAACTCAAGTAGGGGTACTCCATCGGATGGCAGCAGTCAACGTCGGCCATTTAGCTCAGGTGAGAGCGATCCATTTTTAGCTCAATTATCTCAATGTCTGTAGAAGATAGCAAAAACGTGTCAACTAAAAAAATGTTAATGACATTATGATAAACATTTTATCAGTTGACAAAATTTTGATATCTTTTACAGAGATTGAGATAATTGAGCTCAACGCCTAAGCCAAATTTTGGTTGAGGATTACCTACAGTACCTCGGTATTTCTTAAAAACCCTTCTAGATTTATAGCAAAAGATATATATTTAAAATCGTCGTGTTATTCATTTTTCAAAAAAAAAATCGTGTCAGGGGGGACAAAACAAAACAAAACCTAATGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>154 90 89 89 87 87 79 43 40 39 30 30 28 23 23 21 21 9 9 9</canonical_bands>
                <polymorphic_bands>154 90 89 89 87 87 79 52 40 39 30 30 28 23 23 21 21 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACATTCTCGTAAATTCTCTGGT</pcr_primer_p1>
		<pcr_primer_p2>GCTCTCACCTGAGCTAAATG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TACATTCTCGTAAATTCTCTGGTAGCAGCTGACCCTATACGTGCTCTTTGAGCTTAATTATCTCAATTCCTGTAAGAAATATCAAAATTTTGTCAACTGATAAAATGCTCATCATAATATCATCCACATTTTATCAGTTGACAGTTTTTTTGATATCTTTTACAGAAATCGAAATAATTGAACTCAAGTAGGGGTACTCCATCGGATGGCAGCAGTCAACGTCGGCCATTTAGCTCAGGTGAGAGC</canonical_amplicon>
		<polymorphic_amplicon>TACATTCTCGTAAATTCTCTGGTAGCAGCTGACCCTATACGTGCTCTTTGAGCTTAAYTATCTCAATTCCTGTAAGAAATATCAAAATTTTGTCAACTGATAAAATGCTCATCATAATATCATCCACATTTTATCAGTTGACAGTTTTTTTGATATCTTTTACAGAAATCGAAATAATTGAACTCAAGTAGGGGTACTCCATCGGATGGCAGCAGTCAACGTCGGCCATTTAGCTCAGGTGAGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39504</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>110945</contig_pos>
        <strand></strand>
        <context>aatatcaaaa[T/A]tttgtcaact</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TACGTGCTCTTTGAGCTTAATTATCTCAATTCCTGTAAGAAATATCAAAA</left_flank>
        <right_flank>TTTGTCAACTGATAAAATGCTCATCATAATATCATCCACATTTTATCAGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTATAACTTTTTTGGTTTTCGAGATATGCGCCTTTAAAAGAACCGTAACCTGAAAATGGAAAAGAAATTGTTGATAATCATATTGCTCGCATTAGAAATCTGTGAATTATCATGAACCTGTCAATCTATCAGGATATTTTTTTATGGTAACCCAGATACGGTATCTTTCTTCCCAACTTAAAAAATTTGGGACTCTTGGCCGAGTTTTTGGAATTTTTAGGCCACCAAAAACAAAATTGTGTTAAGTAGGTTTTATTGACTGAACTTTGAGTTCAATTATCTCAATTGCCATGAAAAACATCAAAATTTTGTCCACTGATAAAATGTTGATGATATTATGATAAACATTTCATTAGTTGACAAATATTTGATATATGTTACGGGAAATAAGATAATTGAGCTCGAAGCTTTTACATTCTCGTAAATTCTCTGGTAGCAGCTGACCCTATACGTGCTCTTTGAGCTTAATTATCTCAATTCCTGTAAGAAATATCAAAATTTTGTCAACTGATAAAATGCTCATCATAATATCATCCACATTTTATCAGTTGACAGTTTTTTTGATATCTTTTACAGAAATCGAAATAATTGAACTCAAGTAGGGGTACTCCATCGGATGGCAGCAGTCAACGTCGGCCATTTAGCTCAGGTGAGAGCGATCCATTTTTAGCTCAATTATCTCAATGTCTGTAGAAGATAGCAAAAACGTGTCAACTAAAAAAATGTTAATGACATTATGATAAACATTTTATCAGTTGACAAAATTTTGATATCTTTTACAGAGATTGAGATAATTGAGCTCAACGCCTAAGCCAAATTTTGGTTGAGGATTACCTACAGTACCTCGGTATTTCTTAAAAACCCTTCTAGATTTATAGCAAAAGATATATATTTAAAATCGTCGTGTTATTCATTTTTCAAAAAAAAAATCGTGTCAGGGGGGACAAAACAAAACAAAACCTAATGAGAATTTGCTTCACTTCTTCCTTCCAGGAGTCG</canonical>
            <polymorphic>TTTATAACTTTTTTGGTTTTCGAGATATGCGCCTTTAAAAGAACCGTAACCTGAAAATGGAAAAGAAATTGTTGATAATCATATTGCTCGCATTAGAAATCTGTGAATTATCATGAACCTGTCAATCTATCAGGATATTTTTTTATGGTAACCCAGATACGGTATCTTTCTTCCCAACTTAAAAAATTTGGGACTCTTGGCCGAGTTTTTGGAATTTTTAGGCCACCAAAAACAAAATTGTGTTAAGTAGGTTTTATTGACTGAACTTTGAGTTCAATTATCTCAATTGCCATGAAAAACATCAAAATTTTGTCCACTGATAAAATGTTGATGATATTATGATAAACATTTCATTAGTTGACAAATATTTGATATATGTTACGGGAAATAAGATAATTGAGCTCGAAGCTTTTACATTCTCGTAAATTCTCTGGTAGCAGCTGACCCTATACGTGCTCTTTGAGCTTAATTATCTCAATTCCTGTAAGAAATATCAAAAWTTTGTCAACTGATAAAATGCTCATCATAATATCATCCACATTTTATCAGTTGACAGTTTTTTTGATATCTTTTACAGAAATCGAAATAATTGAACTCAAGTAGGGGTACTCCATCGGATGGCAGCAGTCAACGTCGGCCATTTAGCTCAGGTGAGAGCGATCCATTTTTAGCTCAATTATCTCAATGTCTGTAGAAGATAGCAAAAACGTGTCAACTAAAAAAATGTTAATGACATTATGATAAACATTTTATCAGTTGACAAAATTTTGATATCTTTTACAGAGATTGAGATAATTGAGCTCAACGCCTAAGCCAAATTTTGGTTGAGGATTACCTACAGTACCTCGGTATTTCTTAAAAACCCTTCTAGATTTATAGCAAAAGATATATATTTAAAATCGTCGTGTTATTCATTTTTCAAAAAAAAAATCGTGTCAGGGGGGACAAAACAAAACAAAACCTAATGAGAATTTGCTTCACTTCTTCCTTCCAGGAGTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>266 184 153 119 93 73 53 31 28</canonical_bands>
                <polymorphic_bands>339 184 153 119 93 53 31 28</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>153 90 89 89 87 79 66 43 40 39 31 30 30 28 23 23 21 21 9 9</canonical_bands>
                <polymorphic_bands>153 111 89 89 87 79 66 43 40 39 31 30 30 28 23 23 21 9 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACATTCTCGTAAATTCTCTGGT</pcr_primer_p1>
		<pcr_primer_p2>GCTCTCACCTGAGCTAAATG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TACATTCTCGTAAATTCTCTGGTAGCAGCTGACCCTATACGTGCTCTTTGAGCTTAATTATCTCAATTCCTGTAAGAAATATCAAAATTTTGTCAACTGATAAAATGCTCATCATAATATCATCCACATTTTATCAGTTGACAGTTTTTTTGATATCTTTTACAGAAATCGAAATAATTGAACTCAAGTAGGGGTACTCCATCGGATGGCAGCAGTCAACGTCGGCCATTTAGCTCAGGTGAGAGC</canonical_amplicon>
		<polymorphic_amplicon>TACATTCTCGTAAATTCTCTGGTAGCAGCTGACCCTATACGTGCTCTTTGAGCTTAATTATCTCAATTCCTGTAAGAAATATCAAAAWTTTGTCAACTGATAAAATGCTCATCATAATATCATCCACATTTTATCAGTTGACAGTTTTTTTGATATCTTTTACAGAAATCGAAATAATTGAACTCAAGTAGGGGTACTCCATCGGATGGCAGCAGTCAACGTCGGCCATTTAGCTCAGGTGAGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39505</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>111042</contig_pos>
        <strand></strand>
        <context>taattgaact[C/T]aaGTAGGGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGTTGACAGTTTTTTTGATATCTTTTACAGAAATCGAAATAATTGAACT</left_flank>
        <right_flank>AAGTAGGGGTACTCCATCGGATGGCAGCAGTCAACGTCGGCCATTTAGCT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCTGTGAATTATCATGAACCTGTCAATCTATCAGGATATTTTTTTATGGTAACCCAGATACGGTATCTTTCTTCCCAACTTAAAAAATTTGGGACTCTTGGCCGAGTTTTTGGAATTTTTAGGCCACCAAAAACAAAATTGTGTTAAGTAGGTTTTATTGACTGAACTTTGAGTTCAATTATCTCAATTGCCATGAAAAACATCAAAATTTTGTCCACTGATAAAATGTTGATGATATTATGATAAACATTTCATTAGTTGACAAATATTTGATATATGTTACGGGAAATAAGATAATTGAGCTCGAAGCTTTTACATTCTCGTAAATTCTCTGGTAGCAGCTGACCCTATACGTGCTCTTTGAGCTTAATTATCTCAATTCCTGTAAGAAATATCAAAATTTTGTCAACTGATAAAATGCTCATCATAATATCATCCACATTTTATCAGTTGACAGTTTTTTTGATATCTTTTACAGAAATCGAAATAATTGAACTCAAGTAGGGGTACTCCATCGGATGGCAGCAGTCAACGTCGGCCATTTAGCTCAGGTGAGAGCGATCCATTTTTAGCTCAATTATCTCAATGTCTGTAGAAGATAGCAAAAACGTGTCAACTAAAAAAATGTTAATGACATTATGATAAACATTTTATCAGTTGACAAAATTTTGATATCTTTTACAGAGATTGAGATAATTGAGCTCAACGCCTAAGCCAAATTTTGGTTGAGGATTACCTACAGTACCTCGGTATTTCTTAAAAACCCTTCTAGATTTATAGCAAAAGATATATATTTAAAATCGTCGTGTTATTCATTTTTCAAAAAAAAAATCGTGTCAGGGGGGACAAAACAAAACAAAACCTAATGAGAATTTGCTTCACTTCTTCCTTCCAGGAGTCGTGAGAGATCGAGAGAGTGTGGGAGTGAGAGAGAATTAGAGAAAACCGACACAGAGTCCCTTTATCCATTATTCAGTGCTCTCTAGAGAGAGCTCTTG</canonical>
            <polymorphic>AATCTGTGAATTATCATGAACCTGTCAATCTATCAGGATATTTTTTTATGGTAACCCAGATACGGTATCTTTCTTCCCAACTTAAAAAATTTGGGACTCTTGGCCGAGTTTTTGGAATTTTTAGGCCACCAAAAACAAAATTGTGTTAAGTAGGTTTTATTGACTGAACTTTGAGTTCAATTATCTCAATTGCCATGAAAAACATCAAAATTTTGTCCACTGATAAAATGTTGATGATATTATGATAAACATTTCATTAGTTGACAAATATTTGATATATGTTACGGGAAATAAGATAATTGAGCTCGAAGCTTTTACATTCTCGTAAATTCTCTGGTAGCAGCTGACCCTATACGTGCTCTTTGAGCTTAATTATCTCAATTCCTGTAAGAAATATCAAAATTTTGTCAACTGATAAAATGCTCATCATAATATCATCCACATTTTATCAGTTGACAGTTTTTTTGATATCTTTTACAGAAATCGAAATAATTGAACTYAAGTAGGGGTACTCCATCGGATGGCAGCAGTCAACGTCGGCCATTTAGCTCAGGTGAGAGCGATCCATTTTTAGCTCAATTATCTCAATGTCTGTAGAAGATAGCAAAAACGTGTCAACTAAAAAAATGTTAATGACATTATGATAAACATTTTATCAGTTGACAAAATTTTGATATCTTTTACAGAGATTGAGATAATTGAGCTCAACGCCTAAGCCAAATTTTGGTTGAGGATTACCTACAGTACCTCGGTATTTCTTAAAAACCCTTCTAGATTTATAGCAAAAGATATATATTTAAAATCGTCGTGTTATTCATTTTTCAAAAAAAAAATCGTGTCAGGGGGGACAAAACAAAACAAAACCTAATGAGAATTTGCTTCACTTCTTCCTTCCAGGAGTCGTGAGAGATCGAGAGAGTGTGGGAGTGAGAGAGAATTAGAGAAAACCGACACAGAGTCCCTTTATCCATTATTCAGTGCTCTCTAGAGAGAGCTCTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTYRAG</site>
                <isoschizomers>
                    <enzyme>SmlI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACATTCTCGTAAATTCTCTGGT</pcr_primer_p1>
		<pcr_primer_p2>GCTCTCACCTGAGCTAAATG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TACATTCTCGTAAATTCTCTGGTAGCAGCTGACCCTATACGTGCTCTTTGAGCTTAATTATCTCAATTCCTGTAAGAAATATCAAAATTTTGTCAACTGATAAAATGCTCATCATAATATCATCCACATTTTATCAGTTGACAGTTTTTTTGATATCTTTTACAGAAATCGAAATAATTGAACTCAAGTAGGGGTACTCCATCGGATGGCAGCAGTCAACGTCGGCCATTTAGCTCAGGTGAGAGC</canonical_amplicon>
		<polymorphic_amplicon>TACATTCTCGTAAATTCTCTGGTAGCAGCTGACCCTATACGTGCTCTTTGAGCTTAATTATCTCAATTCCTGTAAGAAATATCAAAATTTTGTCAACTGATAAAATGCTCATCATAATATCATCCACATTTTATCAGTTGACAGTTTTTTTGATATCTTTTACAGAAATCGAAATAATTGAACTYAAGTAGGGGTACTCCATCGGATGGCAGCAGTCAACGTCGGCCATTTAGCTCAGGTGAGAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39506</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>160090</contig_pos>
        <strand></strand>
        <context>agaaaaatat[G/A]gcttagyttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAGGCCGTCATGACCTAACTTTTCGTATTCTAGGCCACCTAGAAAAATAT</left_flank>
        <right_flank>GCTTAGTTTTATTAAGGGATTTCTAGGCCACCAAATCTAACGTGGCCTCG</right_flank>
        <qual_score>33</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCGTTGCTGCAAAAAAAAATAATTAAAAGGTGATGGCCTAGTTTTATGGGGGGTTTCTAGGCCACCATCTCAAAATGGCCTAATTTTTCGAAAATTTGGGGAGTCTAGGTCACCAGGAAACAGATGGTCTAGTTTTTTTCTGGGATTTCTAGGCCACCAAATTCAATATTCTTCCGAGAACATATACTAAAAAAATGTTGGTCTAATTTTTTCGATTTTTGTATTTTTAGGCCGTCCAATTGAATATGGCCTAGTTTTCCAAAGTGTTGTATTTCTAGGCCACCAAGAAAAGATGGCATAATTTCTTGGGAGGAGAATTTCTAGGCCACTTGGTCAAAGTAGCCTAAATTTTGTGGTTTCTAGGCCACCAAACATATTGTGGGCTAGTTTTCCAAATTGTTGTGTTTCTCGGCCACCAGATCACAATGGCCTAACTTCAAGGGTTTCCTAGGCCGTCATGACCTAACTTTTCGTATTCTAGGCCACCTAGAAAAATATGGCTTAGTTTTATTAAGGGATTTCTAGGCCACCAAATCTAACGTGGCCTCGTTTTCTGGATTTTTGTATTTCTAGGCCGTCAAGACAAGTATAGCCTAGTTTCTTGGGAAGAGGATTTCTAGGCCACCCACTCAAAATTGTCTAATTTTCCAGATTTTTGCATTTTCTAGGCCACCAGGTCACAATGGCCTAACTTTTAGGGTTTTTTAAGAAAAAATTTTAGTGGCGGAGCTTAAATCACAATCTTCTCAAATTAGGCTCCGCCCACTTTTCCAGGGAATGTTTCTCTCGATATTTGAGGGCCCTCAAAACTTTGGTTTCTGGAGTTCAGACAGACGAGAGTTGAAATTGTGTAGTTTGTAGTTTTTGTAGCCTTTGTAGTCTTTGGTTTTTCAGCTTTTTCGTTCAAGTTTTGGTTTTTTAAGTTCTGAGACATCCGGACAAACCGACACACATTGAGTTATAAACCACATTTGGCTCAAAATTCCTTTTAAAAATTAG</canonical>
            <polymorphic>TTCGTTGCTGCAAAAAAAAATAATTAAAAGGTGATGGCCTAGTTTTATGGGGGGTTTCTAGGCCACCATCTCAAAATGGCCTAATTTTTCGAAAATTTGGGGAGTCTAGGTCACCAGGAAACAGATGGTCTAGTTTTTTTCTGGGATTTCTAGGCCACCAAATTCAATATTCTTCCGAGAACATATACTAAAAAAATGTTGGTCTAATTTTTTCGATTTTTGTATTTTTAGGCCGTCCAATTGAATATGGCCTAGTTTTCCAAAGTGTTGTATTTCTAGGCCACCAAGAAAAGATGGCATAATTTCTTGGGAGGAGAATTTCTAGGCCACTTGGTCAAAGTAGCCTAAATTTTGTGGTTTCTAGGCCACCAAACATATTGTGGGCTAGTTTTCCAAATTGTTGTGTTTCTCGGCCACCAGATCACAATGGCCTAACTTCAAGGGTTTCCTAGGCCGTCATGACCTAACTTTTCGTATTCTAGGCCACCTAGAAAAATATRGCTTAGTTTTATTAAGGGATTTCTAGGCCACCAAATCTAACGTGGCCTCGTTTTCTGGATTTTTGTATTTCTAGGCCGTCAAGACAAGTATAGCCTAGTTTCTTGGGAAGAGGATTTCTAGGCCACCCACTCAAAATTGTCTAATTTTCCAGATTTTTGCATTTTCTAGGCCACCAGGTCACAATGGCCTAACTTTTAGGGTTTTTTAAGAAAAAATTTTAGTGGCGGAGCTTAAATCACAATCTTCTCAAATTAGGCTCCGCCCACTTTTCCAGGGAATGTTTCTCTCGATATTTGAGGGCCCTCAAAACTTTGGTTTCTGGAGTTCAGACAGACGAGAGTTGAAATTGTGTAGTTTGTAGTTTTTGTAGCCTTTGTAGTCTTTGGTTTTTCAGCTTTTTCGTTCAAGTTTTGGTTTTTTAAGTTCTGAGACATCCGGACAAACCGACACACATTGAGTTATAAACCACATTTGGCTCAAAATTCCTTTTAAAAATTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>81 78 75 70 48 46 44 43 37 30 30 30 29 29 27 26 25 24 24 23 22 19 18 18 18 18 17 17 17 17</canonical_bands>
                <polymorphic_bands>81 78 75 70 48 46 44 44 43 37 30 30 30 29 29 27 25 24 24 23 22 19 18 18 18 17 17 17 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCGATTTTTGTATTTTTAGG</pcr_primer_p1>
		<pcr_primer_p2>TGAGAAGATTGTGATTTAAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>541</pcr_amplicon_size>
		<canonical_amplicon>TTTTCGATTTTTGTATTTTTAGGCCGTCCAATTGAATATGGCCTAGTTTTCCAAAGTGTTGTATTTCTAGGCCACCAAGAAAAGATGGCATAATTTCTTGGGAGGAGAATTTCTAGGCCACTTGGTCAAAGTAGCCTAAATTTTGTGGTTTCTAGGCCACCAAACATATTGTGGGCTAGTTTTCCAAATTGTTGTGTTTCTCGGCCACCAGATCACAATGGCCTAACTTCAAGGGTTTCCTAGGCCGTCATGACCTAACTTTTCGTATTCTAGGCCACCTAGAAAAATATGGCTTAGTTTTATTAAGGGATTTCTAGGCCACCAAATCTAACGTGGCCTCGTTTTCTGGATTTTTGTATTTCTAGGCCGTCAAGACAAGTATAGCCTAGTTTCTTGGGAAGAGGATTTCTAGGCCACCCACTCAAAATTGTCTAATTTTCCAGATTTTTGCATTTTCTAGGCCACCAGGTCACAATGGCCTAACTTTTAGGGTTTTTTAAGAAAAAATTTTAGTGGCGGAGCTTAAATCACAATCTTCTCA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCGATTTTTGTATTTTTAGGCCGTCCAATTGAATATGGCCTAGTTTTCCAAAGTGTTGTATTTCTAGGCCACCAAGAAAAGATGGCATAATTTCTTGGGAGGAGAATTTCTAGGCCACTTGGTCAAAGTAGCCTAAATTTTGTGGTTTCTAGGCCACCAAACATATTGTGGGCTAGTTTTCCAAATTGTTGTGTTTCTCGGCCACCAGATCACAATGGCCTAACTTCAAGGGTTTCCTAGGCCGTCATGACCTAACTTTTCGTATTCTAGGCCACCTAGAAAAATATRGCTTAGTTTTATTAAGGGATTTCTAGGCCACCAAATCTAACGTGGCCTCGTTTTCTGGATTTTTGTATTTCTAGGCCGTCAAGACAAGTATAGCCTAGTTTCTTGGGAAGAGGATTTCTAGGCCACCCACTCAAAATTGTCTAATTTTCCAGATTTTTGCATTTTCTAGGCCACCAGGTCACAATGGCCTAACTTTTAGGGTTTTTTAAGAAAAAATTTTAGTGGCGGAGCTTAAATCACAATCTTCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39507</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>160097</contig_pos>
        <strand></strand>
        <context>tatrgcttag[T/C]tttattrrgg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCATGACCTAACTTTTCGTATTCTAGGCCACCTAGAAAAATATGGCTTAG</left_flank>
        <right_flank>TTTATTAAGGGATTTCTAGGCCACCAAATCTAACGTGGCCTCGTTTTCTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGCAAAAAAAAATAATTAAAAGGTGATGGCCTAGTTTTATGGGGGGTTTCTAGGCCACCATCTCAAAATGGCCTAATTTTTCGAAAATTTGGGGAGTCTAGGTCACCAGGAAACAGATGGTCTAGTTTTTTTCTGGGATTTCTAGGCCACCAAATTCAATATTCTTCCGAGAACATATACTAAAAAAATGTTGGTCTAATTTTTTCGATTTTTGTATTTTTAGGCCGTCCAATTGAATATGGCCTAGTTTTCCAAAGTGTTGTATTTCTAGGCCACCAAGAAAAGATGGCATAATTTCTTGGGAGGAGAATTTCTAGGCCACTTGGTCAAAGTAGCCTAAATTTTGTGGTTTCTAGGCCACCAAACATATTGTGGGCTAGTTTTCCAAATTGTTGTGTTTCTCGGCCACCAGATCACAATGGCCTAACTTCAAGGGTTTCCTAGGCCGTCATGACCTAACTTTTCGTATTCTAGGCCACCTAGAAAAATATGGCTTAGTTTTATTAAGGGATTTCTAGGCCACCAAATCTAACGTGGCCTCGTTTTCTGGATTTTTGTATTTCTAGGCCGTCAAGACAAGTATAGCCTAGTTTCTTGGGAAGAGGATTTCTAGGCCACCCACTCAAAATTGTCTAATTTTCCAGATTTTTGCATTTTCTAGGCCACCAGGTCACAATGGCCTAACTTTTAGGGTTTTTTAAGAAAAAATTTTAGTGGCGGAGCTTAAATCACAATCTTCTCAAATTAGGCTCCGCCCACTTTTCCAGGGAATGTTTCTCTCGATATTTGAGGGCCCTCAAAACTTTGGTTTCTGGAGTTCAGACAGACGAGAGTTGAAATTGTGTAGTTTGTAGTTTTTGTAGCCTTTGTAGTCTTTGGTTTTTCAGCTTTTTCGTTCAAGTTTTGGTTTTTTAAGTTCTGAGACATCCGGACAAACCGACACACATTGAGTTATAAACCACATTTGGCTCAAAATTCCTTTTAAAAATTAGCCCAAAA</canonical>
            <polymorphic>CTGCAAAAAAAAATAATTAAAAGGTGATGGCCTAGTTTTATGGGGGGTTTCTAGGCCACCATCTCAAAATGGCCTAATTTTTCGAAAATTTGGGGAGTCTAGGTCACCAGGAAACAGATGGTCTAGTTTTTTTCTGGGATTTCTAGGCCACCAAATTCAATATTCTTCCGAGAACATATACTAAAAAAATGTTGGTCTAATTTTTTCGATTTTTGTATTTTTAGGCCGTCCAATTGAATATGGCCTAGTTTTCCAAAGTGTTGTATTTCTAGGCCACCAAGAAAAGATGGCATAATTTCTTGGGAGGAGAATTTCTAGGCCACTTGGTCAAAGTAGCCTAAATTTTGTGGTTTCTAGGCCACCAAACATATTGTGGGCTAGTTTTCCAAATTGTTGTGTTTCTCGGCCACCAGATCACAATGGCCTAACTTCAAGGGTTTCCTAGGCCGTCATGACCTAACTTTTCGTATTCTAGGCCACCTAGAAAAATATGGCTTAGYTTTATTAAGGGATTTCTAGGCCACCAAATCTAACGTGGCCTCGTTTTCTGGATTTTTGTATTTCTAGGCCGTCAAGACAAGTATAGCCTAGTTTCTTGGGAAGAGGATTTCTAGGCCACCCACTCAAAATTGTCTAATTTTCCAGATTTTTGCATTTTCTAGGCCACCAGGTCACAATGGCCTAACTTTTAGGGTTTTTTAAGAAAAAATTTTAGTGGCGGAGCTTAAATCACAATCTTCTCAAATTAGGCTCCGCCCACTTTTCCAGGGAATGTTTCTCTCGATATTTGAGGGCCCTCAAAACTTTGGTTTCTGGAGTTCAGACAGACGAGAGTTGAAATTGTGTAGTTTGTAGTTTTTGTAGCCTTTGTAGTCTTTGGTTTTTCAGCTTTTTCGTTCAAGTTTTGGTTTTTTAAGTTCTGAGACATCCGGACAAACCGACACACATTGAGTTATAAACCACATTTGGCTCAAAATTCCTTTTAAAAATTAGCCCAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCGATTTTTGTATTTTTAGG</pcr_primer_p1>
		<pcr_primer_p2>TGAGAAGATTGTGATTTAAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>541</pcr_amplicon_size>
		<canonical_amplicon>TTTTCGATTTTTGTATTTTTAGGCCGTCCAATTGAATATGGCCTAGTTTTCCAAAGTGTTGTATTTCTAGGCCACCAAGAAAAGATGGCATAATTTCTTGGGAGGAGAATTTCTAGGCCACTTGGTCAAAGTAGCCTAAATTTTGTGGTTTCTAGGCCACCAAACATATTGTGGGCTAGTTTTCCAAATTGTTGTGTTTCTCGGCCACCAGATCACAATGGCCTAACTTCAAGGGTTTCCTAGGCCGTCATGACCTAACTTTTCGTATTCTAGGCCACCTAGAAAAATATGGCTTAGTTTTATTAAGGGATTTCTAGGCCACCAAATCTAACGTGGCCTCGTTTTCTGGATTTTTGTATTTCTAGGCCGTCAAGACAAGTATAGCCTAGTTTCTTGGGAAGAGGATTTCTAGGCCACCCACTCAAAATTGTCTAATTTTCCAGATTTTTGCATTTTCTAGGCCACCAGGTCACAATGGCCTAACTTTTAGGGTTTTTTAAGAAAAAATTTTAGTGGCGGAGCTTAAATCACAATCTTCTCA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCGATTTTTGTATTTTTAGGCCGTCCAATTGAATATGGCCTAGTTTTCCAAAGTGTTGTATTTCTAGGCCACCAAGAAAAGATGGCATAATTTCTTGGGAGGAGAATTTCTAGGCCACTTGGTCAAAGTAGCCTAAATTTTGTGGTTTCTAGGCCACCAAACATATTGTGGGCTAGTTTTCCAAATTGTTGTGTTTCTCGGCCACCAGATCACAATGGCCTAACTTCAAGGGTTTCCTAGGCCGTCATGACCTAACTTTTCGTATTCTAGGCCACCTAGAAAAATATGGCTTAGYTTTATTAAGGGATTTCTAGGCCACCAAATCTAACGTGGCCTCGTTTTCTGGATTTTTGTATTTCTAGGCCGTCAAGACAAGTATAGCCTAGTTTCTTGGGAAGAGGATTTCTAGGCCACCCACTCAAAATTGTCTAATTTTCCAGATTTTTGCATTTTCTAGGCCACCAGGTCACAATGGCCTAACTTTTAGGGTTTTTTAAGAAAAAATTTTAGTGGCGGAGCTTAAATCACAATCTTCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39508</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>160104</contig_pos>
        <strand></strand>
        <context>tagytttatt[A/G]rgggatttct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTAACTTTTCGTATTCTAGGCCACCTAGAAAAATATGGCTTAGTTTTATT</left_flank>
        <right_flank>AGGGATTTCTAGGCCACCAAATCTAACGTGGCCTCGTTTTCTGGATTTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAAATAATTAAAAGGTGATGGCCTAGTTTTATGGGGGGTTTCTAGGCCACCATCTCAAAATGGCCTAATTTTTCGAAAATTTGGGGAGTCTAGGTCACCAGGAAACAGATGGTCTAGTTTTTTTCTGGGATTTCTAGGCCACCAAATTCAATATTCTTCCGAGAACATATACTAAAAAAATGTTGGTCTAATTTTTTCGATTTTTGTATTTTTAGGCCGTCCAATTGAATATGGCCTAGTTTTCCAAAGTGTTGTATTTCTAGGCCACCAAGAAAAGATGGCATAATTTCTTGGGAGGAGAATTTCTAGGCCACTTGGTCAAAGTAGCCTAAATTTTGTGGTTTCTAGGCCACCAAACATATTGTGGGCTAGTTTTCCAAATTGTTGTGTTTCTCGGCCACCAGATCACAATGGCCTAACTTCAAGGGTTTCCTAGGCCGTCATGACCTAACTTTTCGTATTCTAGGCCACCTAGAAAAATATGGCTTAGTTTTATTAAGGGATTTCTAGGCCACCAAATCTAACGTGGCCTCGTTTTCTGGATTTTTGTATTTCTAGGCCGTCAAGACAAGTATAGCCTAGTTTCTTGGGAAGAGGATTTCTAGGCCACCCACTCAAAATTGTCTAATTTTCCAGATTTTTGCATTTTCTAGGCCACCAGGTCACAATGGCCTAACTTTTAGGGTTTTTTAAGAAAAAATTTTAGTGGCGGAGCTTAAATCACAATCTTCTCAAATTAGGCTCCGCCCACTTTTCCAGGGAATGTTTCTCTCGATATTTGAGGGCCCTCAAAACTTTGGTTTCTGGAGTTCAGACAGACGAGAGTTGAAATTGTGTAGTTTGTAGTTTTTGTAGCCTTTGTAGTCTTTGGTTTTTCAGCTTTTTCGTTCAAGTTTTGGTTTTTTAAGTTCTGAGACATCCGGACAAACCGACACACATTGAGTTATAAACCACATTTGGCTCAAAATTCCTTTTAAAAATTAGCCCAAAAATCACTT</canonical>
            <polymorphic>AAAAAATAATTAAAAGGTGATGGCCTAGTTTTATGGGGGGTTTCTAGGCCACCATCTCAAAATGGCCTAATTTTTCGAAAATTTGGGGAGTCTAGGTCACCAGGAAACAGATGGTCTAGTTTTTTTCTGGGATTTCTAGGCCACCAAATTCAATATTCTTCCGAGAACATATACTAAAAAAATGTTGGTCTAATTTTTTCGATTTTTGTATTTTTAGGCCGTCCAATTGAATATGGCCTAGTTTTCCAAAGTGTTGTATTTCTAGGCCACCAAGAAAAGATGGCATAATTTCTTGGGAGGAGAATTTCTAGGCCACTTGGTCAAAGTAGCCTAAATTTTGTGGTTTCTAGGCCACCAAACATATTGTGGGCTAGTTTTCCAAATTGTTGTGTTTCTCGGCCACCAGATCACAATGGCCTAACTTCAAGGGTTTCCTAGGCCGTCATGACCTAACTTTTCGTATTCTAGGCCACCTAGAAAAATATGGCTTAGTTTTATTRAGGGATTTCTAGGCCACCAAATCTAACGTGGCCTCGTTTTCTGGATTTTTGTATTTCTAGGCCGTCAAGACAAGTATAGCCTAGTTTCTTGGGAAGAGGATTTCTAGGCCACCCACTCAAAATTGTCTAATTTTCCAGATTTTTGCATTTTCTAGGCCACCAGGTCACAATGGCCTAACTTTTAGGGTTTTTTAAGAAAAAATTTTAGTGGCGGAGCTTAAATCACAATCTTCTCAAATTAGGCTCCGCCCACTTTTCCAGGGAATGTTTCTCTCGATATTTGAGGGCCCTCAAAACTTTGGTTTCTGGAGTTCAGACAGACGAGAGTTGAAATTGTGTAGTTTGTAGTTTTTGTAGCCTTTGTAGTCTTTGGTTTTTCAGCTTTTTCGTTCAAGTTTTGGTTTTTTAAGTTCTGAGACATCCGGACAAACCGACACACATTGAGTTATAAACCACATTTGGCTCAAAATTCCTTTTAAAAATTAGCCCAAAAATCACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>488 194 188 70 26 24 10</canonical_bands>
                <polymorphic_bands>682 188 70 26 24 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCGATTTTTGTATTTTTAGG</pcr_primer_p1>
		<pcr_primer_p2>TGAGAAGATTGTGATTTAAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>541</pcr_amplicon_size>
		<canonical_amplicon>TTTTCGATTTTTGTATTTTTAGGCCGTCCAATTGAATATGGCCTAGTTTTCCAAAGTGTTGTATTTCTAGGCCACCAAGAAAAGATGGCATAATTTCTTGGGAGGAGAATTTCTAGGCCACTTGGTCAAAGTAGCCTAAATTTTGTGGTTTCTAGGCCACCAAACATATTGTGGGCTAGTTTTCCAAATTGTTGTGTTTCTCGGCCACCAGATCACAATGGCCTAACTTCAAGGGTTTCCTAGGCCGTCATGACCTAACTTTTCGTATTCTAGGCCACCTAGAAAAATATGGCTTAGTTTTATTAAGGGATTTCTAGGCCACCAAATCTAACGTGGCCTCGTTTTCTGGATTTTTGTATTTCTAGGCCGTCAAGACAAGTATAGCCTAGTTTCTTGGGAAGAGGATTTCTAGGCCACCCACTCAAAATTGTCTAATTTTCCAGATTTTTGCATTTTCTAGGCCACCAGGTCACAATGGCCTAACTTTTAGGGTTTTTTAAGAAAAAATTTTAGTGGCGGAGCTTAAATCACAATCTTCTCA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCGATTTTTGTATTTTTAGGCCGTCCAATTGAATATGGCCTAGTTTTCCAAAGTGTTGTATTTCTAGGCCACCAAGAAAAGATGGCATAATTTCTTGGGAGGAGAATTTCTAGGCCACTTGGTCAAAGTAGCCTAAATTTTGTGGTTTCTAGGCCACCAAACATATTGTGGGCTAGTTTTCCAAATTGTTGTGTTTCTCGGCCACCAGATCACAATGGCCTAACTTCAAGGGTTTCCTAGGCCGTCATGACCTAACTTTTCGTATTCTAGGCCACCTAGAAAAATATGGCTTAGTTTTATTRAGGGATTTCTAGGCCACCAAATCTAACGTGGCCTCGTTTTCTGGATTTTTGTATTTCTAGGCCGTCAAGACAAGTATAGCCTAGTTTCTTGGGAAGAGGATTTCTAGGCCACCCACTCAAAATTGTCTAATTTTCCAGATTTTTGCATTTTCTAGGCCACCAGGTCACAATGGCCTAACTTTTAGGGTTTTTTAAGAAAAAATTTTAGTGGCGGAGCTTAAATCACAATCTTCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39509</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>160105</contig_pos>
        <strand></strand>
        <context>agytttattr[A/G]gggatttcta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAACTTTTCGTATTCTAGGCCACCTAGAAAAATATGGCTTAGTTTTATTA</left_flank>
        <right_flank>GGGATTTCTAGGCCACCAAATCTAACGTGGCCTCGTTTTCTGGATTTTTG</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAATAATTAAAAGGTGATGGCCTAGTTTTATGGGGGGTTTCTAGGCCACCATCTCAAAATGGCCTAATTTTTCGAAAATTTGGGGAGTCTAGGTCACCAGGAAACAGATGGTCTAGTTTTTTTCTGGGATTTCTAGGCCACCAAATTCAATATTCTTCCGAGAACATATACTAAAAAAATGTTGGTCTAATTTTTTCGATTTTTGTATTTTTAGGCCGTCCAATTGAATATGGCCTAGTTTTCCAAAGTGTTGTATTTCTAGGCCACCAAGAAAAGATGGCATAATTTCTTGGGAGGAGAATTTCTAGGCCACTTGGTCAAAGTAGCCTAAATTTTGTGGTTTCTAGGCCACCAAACATATTGTGGGCTAGTTTTCCAAATTGTTGTGTTTCTCGGCCACCAGATCACAATGGCCTAACTTCAAGGGTTTCCTAGGCCGTCATGACCTAACTTTTCGTATTCTAGGCCACCTAGAAAAATATGGCTTAGTTTTATTAAGGGATTTCTAGGCCACCAAATCTAACGTGGCCTCGTTTTCTGGATTTTTGTATTTCTAGGCCGTCAAGACAAGTATAGCCTAGTTTCTTGGGAAGAGGATTTCTAGGCCACCCACTCAAAATTGTCTAATTTTCCAGATTTTTGCATTTTCTAGGCCACCAGGTCACAATGGCCTAACTTTTAGGGTTTTTTAAGAAAAAATTTTAGTGGCGGAGCTTAAATCACAATCTTCTCAAATTAGGCTCCGCCCACTTTTCCAGGGAATGTTTCTCTCGATATTTGAGGGCCCTCAAAACTTTGGTTTCTGGAGTTCAGACAGACGAGAGTTGAAATTGTGTAGTTTGTAGTTTTTGTAGCCTTTGTAGTCTTTGGTTTTTCAGCTTTTTCGTTCAAGTTTTGGTTTTTTAAGTTCTGAGACATCCGGACAAACCGACACACATTGAGTTATAAACCACATTTGGCTCAAAATTCCTTTTAAAAATTAGCCCAAAAATCACTTT</canonical>
            <polymorphic>AAAAATAATTAAAAGGTGATGGCCTAGTTTTATGGGGGGTTTCTAGGCCACCATCTCAAAATGGCCTAATTTTTCGAAAATTTGGGGAGTCTAGGTCACCAGGAAACAGATGGTCTAGTTTTTTTCTGGGATTTCTAGGCCACCAAATTCAATATTCTTCCGAGAACATATACTAAAAAAATGTTGGTCTAATTTTTTCGATTTTTGTATTTTTAGGCCGTCCAATTGAATATGGCCTAGTTTTCCAAAGTGTTGTATTTCTAGGCCACCAAGAAAAGATGGCATAATTTCTTGGGAGGAGAATTTCTAGGCCACTTGGTCAAAGTAGCCTAAATTTTGTGGTTTCTAGGCCACCAAACATATTGTGGGCTAGTTTTCCAAATTGTTGTGTTTCTCGGCCACCAGATCACAATGGCCTAACTTCAAGGGTTTCCTAGGCCGTCATGACCTAACTTTTCGTATTCTAGGCCACCTAGAAAAATATGGCTTAGTTTTATTARGGGATTTCTAGGCCACCAAATCTAACGTGGCCTCGTTTTCTGGATTTTTGTATTTCTAGGCCGTCAAGACAAGTATAGCCTAGTTTCTTGGGAAGAGGATTTCTAGGCCACCCACTCAAAATTGTCTAATTTTCCAGATTTTTGCATTTTCTAGGCCACCAGGTCACAATGGCCTAACTTTTAGGGTTTTTTAAGAAAAAATTTTAGTGGCGGAGCTTAAATCACAATCTTCTCAAATTAGGCTCCGCCCACTTTTCCAGGGAATGTTTCTCTCGATATTTGAGGGCCCTCAAAACTTTGGTTTCTGGAGTTCAGACAGACGAGAGTTGAAATTGTGTAGTTTGTAGTTTTTGTAGCCTTTGTAGTCTTTGGTTTTTCAGCTTTTTCGTTCAAGTTTTGGTTTTTTAAGTTCTGAGACATCCGGACAAACCGACACACATTGAGTTATAAACCACATTTGGCTCAAAATTCCTTTTAAAAATTAGCCCAAAAATCACTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>488 194 188 70 26 25 9</canonical_bands>
                <polymorphic_bands>682 188 70 26 25 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCGATTTTTGTATTTTTAGG</pcr_primer_p1>
		<pcr_primer_p2>TGAGAAGATTGTGATTTAAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>541</pcr_amplicon_size>
		<canonical_amplicon>TTTTCGATTTTTGTATTTTTAGGCCGTCCAATTGAATATGGCCTAGTTTTCCAAAGTGTTGTATTTCTAGGCCACCAAGAAAAGATGGCATAATTTCTTGGGAGGAGAATTTCTAGGCCACTTGGTCAAAGTAGCCTAAATTTTGTGGTTTCTAGGCCACCAAACATATTGTGGGCTAGTTTTCCAAATTGTTGTGTTTCTCGGCCACCAGATCACAATGGCCTAACTTCAAGGGTTTCCTAGGCCGTCATGACCTAACTTTTCGTATTCTAGGCCACCTAGAAAAATATGGCTTAGTTTTATTAAGGGATTTCTAGGCCACCAAATCTAACGTGGCCTCGTTTTCTGGATTTTTGTATTTCTAGGCCGTCAAGACAAGTATAGCCTAGTTTCTTGGGAAGAGGATTTCTAGGCCACCCACTCAAAATTGTCTAATTTTCCAGATTTTTGCATTTTCTAGGCCACCAGGTCACAATGGCCTAACTTTTAGGGTTTTTTAAGAAAAAATTTTAGTGGCGGAGCTTAAATCACAATCTTCTCA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCGATTTTTGTATTTTTAGGCCGTCCAATTGAATATGGCCTAGTTTTCCAAAGTGTTGTATTTCTAGGCCACCAAGAAAAGATGGCATAATTTCTTGGGAGGAGAATTTCTAGGCCACTTGGTCAAAGTAGCCTAAATTTTGTGGTTTCTAGGCCACCAAACATATTGTGGGCTAGTTTTCCAAATTGTTGTGTTTCTCGGCCACCAGATCACAATGGCCTAACTTCAAGGGTTTCCTAGGCCGTCATGACCTAACTTTTCGTATTCTAGGCCACCTAGAAAAATATGGCTTAGTTTTATTARGGGATTTCTAGGCCACCAAATCTAACGTGGCCTCGTTTTCTGGATTTTTGTATTTCTAGGCCGTCAAGACAAGTATAGCCTAGTTTCTTGGGAAGAGGATTTCTAGGCCACCCACTCAAAATTGTCTAATTTTCCAGATTTTTGCATTTTCTAGGCCACCAGGTCACAATGGCCTAACTTTTAGGGTTTTTTAAGAAAAAATTTTAGTGGCGGAGCTTAAATCACAATCTTCTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39510</snp_id>
        <super_contig>c013901076.Contig1</super_contig>
        <contig_pos>160472</contig_pos>
        <strand>+</strand>
        <context>CCTTTGTAGT[C/T]TTTGGTTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGACGAGAGTTGAAATTGTGTAGTTTGTAGTTTTTGTAGCCTTTGTAGT</left_flank>
        <right_flank>TTTGGTTTTTCAGCTTTTTCGTTCAAGTTTTGGTTTTTTAAGTTCTGAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTAGTTTTCCAAATTGTTGTGTTTCTCGGCCACCAGATCACAATGGCCTAACTTCAAGGGTTTCCTAGGCCGTCATGACCTAACTTTTCGTATTCTAGGCCACCTAGAAAAATATGGCTTAGTTTTATTAAGGGATTTCTAGGCCACCAAATCTAACGTGGCCTCGTTTTCTGGATTTTTGTATTTCTAGGCCGTCAAGACAAGTATAGCCTAGTTTCTTGGGAAGAGGATTTCTAGGCCACCCACTCAAAATTGTCTAATTTTCCAGATTTTTGCATTTTCTAGGCCACCAGGTCACAATGGCCTAACTTTTAGGGTTTTTTAAGAAAAAATTTTAGTGGCGGAGCTTAAATCACAATCTTCTCAAATTAGGCTCCGCCCACTTTTCCAGGGAATGTTTCTCTCGATATTTGAGGGCCCTCAAAACTTTGGTTTCTGGAGTTCAGACAGACGAGAGTTGAAATTGTGTAGTTTGTAGTTTTTGTAGCCTTTGTAGTCTTTGGTTTTTCAGCTTTTTCGTTCAAGTTTTGGTTTTTTAAGTTCTGAGACATCCGGACAAACCGACACACATTGAGTTATAAACCACATTTGGCTCAAAATTCCTTTTAAAAATTAGCCCAAAAATCACTTTATTCAAAATTTTTCAAAATTTTAAATTCGAAATTTCTAGGCCATTTTGGATAATTTAGGCCACCATACTCACATCTCCACAGTCTCAGTTGGCCGGTGTTTTCCAGCTGCATACACTGATAGCTTCTTTTTCTTGGCCATCATATCGTCGGCATCCGGTTCGGATTGGTAGAGAACCAGTGGGTTGGAGGTTTCCACCTGGAGAGAAAAATGTATATACAGTAGAACCTGTATTAGAAGGGCGCCTCTAATAGAAGGGCCATACGGGAGGGGTTTGGAAAAAGAGAAGGGCCCCCTGTAATAGATTGACATCAGTAATAGAAGGGCCGGCCCTTCTATTACAGGTTTTACGGTATTTGAGATTTTTA</canonical>
            <polymorphic>GGCTAGTTTTCCAAATTGTTGTGTTTCTCGGCCACCAGATCACAATGGCCTAACTTCAAGGGTTTCCTAGGCCGTCATGACCTAACTTTTCGTATTCTAGGCCACCTAGAAAAATATGGCTTAGTTTTATTAAGGGATTTCTAGGCCACCAAATCTAACGTGGCCTCGTTTTCTGGATTTTTGTATTTCTAGGCCGTCAAGACAAGTATAGCCTAGTTTCTTGGGAAGAGGATTTCTAGGCCACCCACTCAAAATTGTCTAATTTTCCAGATTTTTGCATTTTCTAGGCCACCAGGTCACAATGGCCTAACTTTTAGGGTTTTTTAAGAAAAAATTTTAGTGGCGGAGCTTAAATCACAATCTTCTCAAATTAGGCTCCGCCCACTTTTCCAGGGAATGTTTCTCTCGATATTTGAGGGCCCTCAAAACTTTGGTTTCTGGAGTTCAGACAGACGAGAGTTGAAATTGTGTAGTTTGTAGTTTTTGTAGCCTTTGTAGTYTTTGGTTTTTCAGCTTTTTCGTTCAAGTTTTGGTTTTTTAAGTTCTGAGACATCCGGACAAACCGACACACATTGAGTTATAAACCACATTTGGCTCAAAATTCCTTTTAAAAATTAGCCCAAAAATCACTTTATTCAAAATTTTTCAAAATTTTAAATTCGAAATTTCTAGGCCATTTTGGATAATTTAGGCCACCATACTCACATCTCCACAGTCTCAGTTGGCCGGTGTTTTCCAGCTGCATACACTGATAGCTTCTTTTTCTTGGCCATCATATCGTCGGCATCCGGTTCGGATTGGTAGAGAACCAGTGGGTTGGAGGTTTCCACCTGGAGAGAAAAATGTATATACAGTAGAACCTGTATTAGAAGGGCGCCTCTAATAGAAGGGCCATACGGGAGGGGTTTGGAAAAAGAGAAGGGCCCCCTGTAATAGATTGACATCAGTAATAGAAGGGCCGGCCCTTCTATTACAGGTTTTACGGTATTTGAGATTTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTTAAATCACAATCTTCTCAAA</pcr_primer_p1>
		<pcr_primer_p2>GAGCCAAATGTGGTTTATAACT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GCTTAAATCACAATCTTCTCAAATTAGGCTCCGCCCACTTTTCCAGGGAATGTTTCTCTCGATATTTGAGGGCCCTCAAAACTTTGGTTTCTGGAGTTCAGACAGACGAGAGTTGAAATTGTGTAGTTTGTAGTTTTTGTAGCCTTTGTAGTCTTTGGTTTTTCAGCTTTTTCGTTCAAGTTTTGGTTTTTTAAGTTCTGAGACATCCGGACAAACCGACACACATTGAGTTATAAACCACATTTGGCTC</canonical_amplicon>
		<polymorphic_amplicon>GCTTAAATCACAATCTTCTCAAATTAGGCTCCGCCCACTTTTCCAGGGAATGTTTCTCTCGATATTTGAGGGCCCTCAAAACTTTGGTTTCTGGAGTTCAGACAGACGAGAGTTGAAATTGTGTAGTTTGTAGTTTTTGTAGCCTTTGTAGTYTTTGGTTTTTCAGCTTTTTCGTTCAAGTTTTGGTTTTTTAAGTTCTGAGACATCCGGACAAACCGACACACATTGAGTTATAAACCACATTTGGCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39511</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>76701</contig_pos>
        <strand>+</strand>
        <context>TCTGAACATG[C/T]GGGATTACAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAGGACTGAAGCGGACCTTGTGAACGACATCTCGTCTTCTCTGAACATG</left_flank>
        <right_flank>GGGATTACATTTTTGGCAATCCCTTTTAACCGCAAATGCATTTGAATCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATGTCAACTCTGAGCCCATACATCCTGTAACAGCTTTCAGAAGGTAGTAAACTAAAAATGTTACTGATAATTTGATAAACATTTTATCCGTAGTCTCCATCGAAAATTCAAATGGCCCAAATATGGGCGTGTCACTGTTTACGGTATATTATTCTTACAATGTTTCTCTATGTGAATTGAATTCCACAATCGTATGAGCTTCATTAATATGTTTTGGGAGAGCAAATTTAATCCAAACTTTGCTCAAAACAGCTTTTGTATTTTGAACATCTAGCACAACTTGCTTTTGAGATAAGAATGCGGTAGAAAGAGCCACAGGTGTGGAGTCTGAAACGATTTTTTGAACCATCTGAGCTTATTTCTTTTCAAAAACCAACCTCTTTTCTTCTCGCACGTCCCTTGGGAAGTATTAAATTGCAATTCATCAGCACAGTCACAGATCATTGGAGAGGACTGAAGCGGACCTTGTGAACGACATCTCGTCTTCTCTGAACATGTGGGATTACATTTTTGGCAATCCCTTTTAACCGCAAATGCATTTGAATCATATTCCTCGATCAGCATTGCGTGTTTCTGAGCATCGAAACTCGTAGTGAGATCCATTTTGGCTCCTCGAATGAAAACATCCTTGACACATCCTCTGAGCACTGGCGCCTTTTCTCTAGTATTCTCAAAATATTTCTGTTCGGCTTCTGCTTTGTACAATCCACGCCGTTTCTTCTCGTGCCATATTCCGCCGATGAATAATCCTGCGCCTTGAGATATCTGTGGAATCGCGTAGACCTCTGCCAAACTGATATTTGGAGATTGTTGGAGGCGACAAATTGAAGAATCAGTAGCCAAATGAATTTCATCTCCGCCACCCCAAAGTATCGTTTGAATCCATTCATCTCTTCCGAATCCGCGAGCATTTCTAATCGAACATCCAGAACATTCTTCATCTTCTGCGTGTTTACAATAAACTGCAGATATCAAATCATAATGATAATAGACTTGAA</canonical>
            <polymorphic>TAATGTCAACTCTGAGCCCATACATCCTGTAACAGCTTTCAGAAGGTAGTAAACTAAAAATGTTACTGATAATTTGATAAACATTTTATCCGTAGTCTCCATCGAAAATTCAAATGGCCCAAATATGGGCGTGTCACTGTTTACGGTATATTATTCTTACAATGTTTCTCTATGTGAATTGAATTCCACAATCGTATGAGCTTCATTAATATGTTTTGGGAGAGCAAATTTAATCCAAACTTTGCTCAAAACAGCTTTTGTATTTTGAACATCTAGCACAACTTGCTTTTGAGATAAGAATGCGGTAGAAAGAGCCACAGGTGTGGAGTCTGAAACGATTTTTTGAACCATCTGAGCTTATTTCTTTTCAAAAACCAACCTCTTTTCTTCTCGCACGTCCCTTGGGAAGTATTAAATTGCAATTCATCAGCACAGTCACAGATCATTGGAGAGGACTGAAGCGGACCTTGTGAACGACATCTCGTCTTCTCTGAACATGYGGGATTACATTTTTGGCAATCCCTTTTAACCGCAAATGCATTTGAATCATATTCCTCGATCAGCATTGCGTGTTTCTGAGCATCGAAACTCGTAGTGAGATCCATTTTGGCTCCTCGAATGAAAACATCCTTGACACATCCTCTGAGCACTGGCGCCTTTTCTCTAGTATTCTCAAAATATTTCTGTTCGGCTTCTGCTTTGTACAATCCACGCCGTTTCTTCTCGTGCCATATTCCGCCGATGAATAATCCTGCGCCTTGAGATATCTGTGGAATCGCGTAGACCTCTGCCAAACTGATATTTGGAGATTGTTGGAGGCGACAAATTGAAGAATCAGTAGCCAAATGAATTTCATCTCCGCCACCCCAAAGTATCGTTTGAATCCATTCATCTCTTCCGAATCCGCGAGCATTTCTAATCGAACATCCAGAACATTCTTCATCTTCTGCGTGTTTACAATAAACTGCAGATATCAAATCATAATGATAATAGACTTGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACRYGT</site>
                <isoschizomers>
                    <enzyme>AflIII</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>ACATGT</site>
                <isoschizomers>
                    <enzyme>BspLU11I</enzyme>
                    <enzyme>PciI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RCATGY</site>
                <isoschizomers>
                    <enzyme>BstNSI</enzyme>
                    <enzyme>NspI</enzyme>
                    <enzyme>XceI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>133 92 90 89 71 70 62 47 44 40 39 39 37 34 29 25 17 13 12 6 6 3 2</canonical_bands>
                <polymorphic_bands>133 100 92 90 89 70 62 47 44 40 39 39 37 34 25 17 13 12 6 6 3 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TATTTCTTTTCAAAAACCAACCT</pcr_primer_p1>
		<pcr_primer_p2>AAAATGGATCTCACTACGAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATTTCTTTTCAAAAACCAACCTCTTTTCTTCTCGCACGTCCCTTGGGAAGTATTAAATTGCAATTCATCAGCACAGTCACAGATCATTGGAGAGGACTGAAGCGGACCTTGTGAACGACATCTCGTCTTCTCTGAACATGTGGGATTACATTTTTGGCAATCCCTTTTAACCGCAAATGCATTTGAATCATATTCCTCGATCAGCATTGCGTGTTTCTGAGCATCGAAACTCGTAGTGAGATCCATTTT</canonical_amplicon>
		<polymorphic_amplicon>TATTTCTTTTCAAAAACCAACCTCTTTTCTTCTCGCACGTCCCTTGGGAAGTATTAAATTGCAATTCATCAGCACAGTCACAGATCATTGGAGAGGACTGAAGCGGACCTTGTGAACGACATCTCGTCTTCTCTGAACATGYGGGATTACATTTTTGGCAATCCCTTTTAACCGCAAATGCATTTGAATCATATTCCTCGATCAGCATTGCGTGTTTCTGAGCATCGAAACTCGTAGTGAGATCCATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39512</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>78979</contig_pos>
        <strand>+</strand>
        <context>TCTTTCCGCC[C/T]CTSGCTCATT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCTAATAACAAAAGAGCAATGAGGCGTAATATCAAATTGTCTTTCCGCC</left_flank>
        <right_flank>CTCGCTCATTTTTGGTGAGCAAAAAAGGAGAAAAGTTGAAGAAAGAAGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCAGCGAGATAATGATTATAACATGAGAAACGAGATTGAATATCACCTGAAAGTCGCAATAGTGATTTTTGGGACTTCTTTTAAAAATTCTGATATCATGCTTGTATAAAAAATCGGAGATGCGAAGGAGAAAAGCTTGTGGGCGTGGCCAACGGTCCCCTTAGCGAGAACCACAGTAACCTAAAATTTTCGACCCTTTTTTCTCGATTACTTTTGCCTTTTGACAACTTTAAAACTTTCAAAAAAGTCGGAAATCTAAATCTTTCTAAATCGAAAGAATTGGCGGAAAACGGACGAAAAATGAGAAAAAAAAAATTGTTTTTTGAAAATTACGGTAGTCCGGCTGTGGCTGTGGCTGTGGCCCACCAGAGTCTCTCTCCACAACACCACTTTTATTTGTACCAGAATAATATAAAAATTTTGAAAAAAACTTACAATTAACAAATACAGCTAATAACAAAAGAGCAATGAGGCGTAATATCAAATTGTCTTTCCGCCTCTCGCTCATTTTTGGTGAGCAAAAAAGGAGAAAAGTTGAAGAAAGAAGATGAACCTGAAAAGGCGGTAAATTGAAGTTGAGATAAAAGAGACAAAAGATTTCTCCGGGGAGAAAAAAGAGATGAAATGTTTCGATATACATAACGGAAGGATAATCGTGCGTTTCCGGACGAACTCGGGGAGCCAGGGACCGAATATTGAAGGAAGGCACGGAAGCGGAACGGAATGAGCAAAAAAATAGAATTTGTTGTTGAGAATATTGAGGTCAAGTGAAAACTATCTTTAACATTTCTTGTCTTTTGATATGTGATGGGTCTCAATATAAAGAGAAAAGAGGTCTAACAAAAAAAGAGAAAGGCTTAGTGGTTCTTTTGGAAAAAAGAGCTAAAAAAGAAGAGGTTATGTCACGAAACGTTTAATAAATCATTGGAATCGGTAAGGGTAGGTCAGGACAAAAAAGGGTTAGAAAAGTTATGATGTGAAGAAAAAAAAAATAGCTGA</canonical>
            <polymorphic>ACCAGCGAGATAATGATTATAACATGAGAAACGAGATTGAATATCACCTGAAAGTCGCAATAGTGATTTTTGGGACTTCTTTTAAAAATTCTGATATCATGCTTGTATAAAAAATCGGAGATGCGAAGGAGAAAAGCTTGTGGGCGTGGCCAACGGTCCCCTTAGCGAGAACCACAGTAACCTAAAATTTTCGACCCTTTTTTCTCGATTACTTTTGCCTTTTGACAACTTTAAAACTTTCAAAAAAGTCGGAAATCTAAATCTTTCTAAATCGAAAGAATTGGCGGAAAACGGACGAAAAATGAGAAAAAAAAAATTGTTTTTTGAAAATTACGGTAGTCCGGCTGTGGCTGTGGCTGTGGCCCACCAGAGTCTCTCTCCACAACACCACTTTTATTTGTACCAGAATAATATAAAAATTTTGAAAAAAACTTACAATTAACAAATACAGCTAATAACAAAAGAGCAATGAGGCGTAATATCAAATTGTCTTTCCGCCYCTCGCTCATTTTTGGTGAGCAAAAAAGGAGAAAAGTTGAAGAAAGAAGATGAACCTGAAAAGGCGGTAAATTGAAGTTGAGATAAAAGAGACAAAAGATTTCTCCGGGGAGAAAAAAGAGATGAAATGTTTCGATATACATAACGGAAGGATAATCGTGCGTTTCCGGACGAACTCGGGGAGCCAGGGACCGAATATTGAAGGAAGGCACGGAAGCGGAACGGAATGAGCAAAAAAATAGAATTTGTTGTTGAGAATATTGAGGTCAAGTGAAAACTATCTTTAACATTTCTTGTCTTTTGATATGTGATGGGTCTCAATATAAAGAGAAAAGAGGTCTAACAAAAAAAGAGAAAGGCTTAGTGGTTCTTTTGGAAAAAAGAGCTAAAAAAGAAGAGGTTATGTCACGAAACGTTTAATAAATCATTGGAATCGGTAAGGGTAGGTCAGGACAAAAAAGGGTTAGAAAAGTTATGATGTGAAGAAAAAAAAAATAGCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTTACAATTAACAAATACAGC</pcr_primer_p1>
		<pcr_primer_p2>ACGATTATCCTTCCGTTATGTAT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTTACAATTAACAAATACAGCTAATAACAAAAGAGCAATGAGGCGTAATATCAAATTGTCTTTCCGCCTCTCGCTCATTTTTGGTGAGCAAAAAAGGAGAAAAGTTGAAGAAAGAAGATGAACCTGAAAAGGCGGTAAATTGAAGTTGAGATAAAAGAGACAAAAGATTTCTCCGGGGAGAAAAAAGAGATGAAATGTTTCGATATACATAACGGAAGGATAATCGT</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTTACAATTAACAAATACAGCTAATAACAAAAGAGCAATGAGGCGTAATATCAAATTGTCTTTCCGCCYCTCGCTCATTTTTGGTGAGCAAAAAAGGAGAAAAGTTGAAGAAAGAAGATGAACCTGAAAAGGCGGTAAATTGAAGTTGAGATAAAAGAGACAAAAGATTTCTCCGGGGAGAAAAAAGAGATGAAATGTTTCGATATACATAACGGAAGGATAATCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39513</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>78982</contig_pos>
        <strand>+</strand>
        <context>TTCCGCCYCT[C/G]GCTCATTTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TAATAACAAAAGAGCAATGAGGCGTAATATCAAATTGTCTTTCCGCCTCT</left_flank>
        <right_flank>GCTCATTTTTGGTGAGCAAAAAAGGAGAAAAGTTGAAGAAAGAAGATGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCGAGATAATGATTATAACATGAGAAACGAGATTGAATATCACCTGAAAGTCGCAATAGTGATTTTTGGGACTTCTTTTAAAAATTCTGATATCATGCTTGTATAAAAAATCGGAGATGCGAAGGAGAAAAGCTTGTGGGCGTGGCCAACGGTCCCCTTAGCGAGAACCACAGTAACCTAAAATTTTCGACCCTTTTTTCTCGATTACTTTTGCCTTTTGACAACTTTAAAACTTTCAAAAAAGTCGGAAATCTAAATCTTTCTAAATCGAAAGAATTGGCGGAAAACGGACGAAAAATGAGAAAAAAAAAATTGTTTTTTGAAAATTACGGTAGTCCGGCTGTGGCTGTGGCTGTGGCCCACCAGAGTCTCTCTCCACAACACCACTTTTATTTGTACCAGAATAATATAAAAATTTTGAAAAAAACTTACAATTAACAAATACAGCTAATAACAAAAGAGCAATGAGGCGTAATATCAAATTGTCTTTCCGCCTCTCGCTCATTTTTGGTGAGCAAAAAAGGAGAAAAGTTGAAGAAAGAAGATGAACCTGAAAAGGCGGTAAATTGAAGTTGAGATAAAAGAGACAAAAGATTTCTCCGGGGAGAAAAAAGAGATGAAATGTTTCGATATACATAACGGAAGGATAATCGTGCGTTTCCGGACGAACTCGGGGAGCCAGGGACCGAATATTGAAGGAAGGCACGGAAGCGGAACGGAATGAGCAAAAAAATAGAATTTGTTGTTGAGAATATTGAGGTCAAGTGAAAACTATCTTTAACATTTCTTGTCTTTTGATATGTGATGGGTCTCAATATAAAGAGAAAAGAGGTCTAACAAAAAAAGAGAAAGGCTTAGTGGTTCTTTTGGAAAAAAGAGCTAAAAAAGAAGAGGTTATGTCACGAAACGTTTAATAAATCATTGGAATCGGTAAGGGTAGGTCAGGACAAAAAAGGGTTAGAAAAGTTATGATGTGAAGAAAAAAAAAATAGCTGAATG</canonical>
            <polymorphic>AGCGAGATAATGATTATAACATGAGAAACGAGATTGAATATCACCTGAAAGTCGCAATAGTGATTTTTGGGACTTCTTTTAAAAATTCTGATATCATGCTTGTATAAAAAATCGGAGATGCGAAGGAGAAAAGCTTGTGGGCGTGGCCAACGGTCCCCTTAGCGAGAACCACAGTAACCTAAAATTTTCGACCCTTTTTTCTCGATTACTTTTGCCTTTTGACAACTTTAAAACTTTCAAAAAAGTCGGAAATCTAAATCTTTCTAAATCGAAAGAATTGGCGGAAAACGGACGAAAAATGAGAAAAAAAAAATTGTTTTTTGAAAATTACGGTAGTCCGGCTGTGGCTGTGGCTGTGGCCCACCAGAGTCTCTCTCCACAACACCACTTTTATTTGTACCAGAATAATATAAAAATTTTGAAAAAAACTTACAATTAACAAATACAGCTAATAACAAAAGAGCAATGAGGCGTAATATCAAATTGTCTTTCCGCCTCTSGCTCATTTTTGGTGAGCAAAAAAGGAGAAAAGTTGAAGAAAGAAGATGAACCTGAAAAGGCGGTAAATTGAAGTTGAGATAAAAGAGACAAAAGATTTCTCCGGGGAGAAAAAAGAGATGAAATGTTTCGATATACATAACGGAAGGATAATCGTGCGTTTCCGGACGAACTCGGGGAGCCAGGGACCGAATATTGAAGGAAGGCACGGAAGCGGAACGGAATGAGCAAAAAAATAGAATTTGTTGTTGAGAATATTGAGGTCAAGTGAAAACTATCTTTAACATTTCTTGTCTTTTGATATGTGATGGGTCTCAATATAAAGAGAAAAGAGGTCTAACAAAAAAAGAGAAAGGCTTAGTGGTTCTTTTGGAAAAAAGAGCTAAAAAAGAAGAGGTTATGTCACGAAACGTTTAATAAATCATTGGAATCGGTAAGGGTAGGTCAGGACAAAAAAGGGTTAGAAAAGTTATGATGTGAAGAAAAAAAAAATAGCTGAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTTACAATTAACAAATACAGC</pcr_primer_p1>
		<pcr_primer_p2>ACGATTATCCTTCCGTTATGTAT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTTACAATTAACAAATACAGCTAATAACAAAAGAGCAATGAGGCGTAATATCAAATTGTCTTTCCGCCTCTCGCTCATTTTTGGTGAGCAAAAAAGGAGAAAAGTTGAAGAAAGAAGATGAACCTGAAAAGGCGGTAAATTGAAGTTGAGATAAAAGAGACAAAAGATTTCTCCGGGGAGAAAAAAGAGATGAAATGTTTCGATATACATAACGGAAGGATAATCGT</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTTACAATTAACAAATACAGCTAATAACAAAAGAGCAATGAGGCGTAATATCAAATTGTCTTTCCGCCTCTSGCTCATTTTTGGTGAGCAAAAAAGGAGAAAAGTTGAAGAAAGAAGATGAACCTGAAAAGGCGGTAAATTGAAGTTGAGATAAAAGAGACAAAAGATTTCTCCGGGGAGAAAAAAGAGATGAAATGTTTCGATATACATAACGGAAGGATAATCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39514</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>79005</contig_pos>
        <strand>+</strand>
        <context>TGAGCAAAAA[A/G]GGAGAAAAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GTAATATCAAATTGTCTTTCCGCCTCTCGCTCATTTTTGGTGAGCAAAAA</left_flank>
        <right_flank>GGAGAAAAGTTGAAGAAAGAAGATGAACCTGAAAAGGCGGTAAATTGAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAACGAGATTGAATATCACCTGAAAGTCGCAATAGTGATTTTTGGGACTTCTTTTAAAAATTCTGATATCATGCTTGTATAAAAAATCGGAGATGCGAAGGAGAAAAGCTTGTGGGCGTGGCCAACGGTCCCCTTAGCGAGAACCACAGTAACCTAAAATTTTCGACCCTTTTTTCTCGATTACTTTTGCCTTTTGACAACTTTAAAACTTTCAAAAAAGTCGGAAATCTAAATCTTTCTAAATCGAAAGAATTGGCGGAAAACGGACGAAAAATGAGAAAAAAAAAATTGTTTTTTGAAAATTACGGTAGTCCGGCTGTGGCTGTGGCTGTGGCCCACCAGAGTCTCTCTCCACAACACCACTTTTATTTGTACCAGAATAATATAAAAATTTTGAAAAAAACTTACAATTAACAAATACAGCTAATAACAAAAGAGCAATGAGGCGTAATATCAAATTGTCTTTCCGCCTCTCGCTCATTTTTGGTGAGCAAAAAAGGAGAAAAGTTGAAGAAAGAAGATGAACCTGAAAAGGCGGTAAATTGAAGTTGAGATAAAAGAGACAAAAGATTTCTCCGGGGAGAAAAAAGAGATGAAATGTTTCGATATACATAACGGAAGGATAATCGTGCGTTTCCGGACGAACTCGGGGAGCCAGGGACCGAATATTGAAGGAAGGCACGGAAGCGGAACGGAATGAGCAAAAAAATAGAATTTGTTGTTGAGAATATTGAGGTCAAGTGAAAACTATCTTTAACATTTCTTGTCTTTTGATATGTGATGGGTCTCAATATAAAGAGAAAAGAGGTCTAACAAAAAAAGAGAAAGGCTTAGTGGTTCTTTTGGAAAAAAGAGCTAAAAAAGAAGAGGTTATGTCACGAAACGTTTAATAAATCATTGGAATCGGTAAGGGTAGGTCAGGACAAAAAAGGGTTAGAAAAGTTATGATGTGAAGAAAAAAAAAATAGCTGAATGAACTCCAATGTTTTGAATAGAAT</canonical>
            <polymorphic>AGAAACGAGATTGAATATCACCTGAAAGTCGCAATAGTGATTTTTGGGACTTCTTTTAAAAATTCTGATATCATGCTTGTATAAAAAATCGGAGATGCGAAGGAGAAAAGCTTGTGGGCGTGGCCAACGGTCCCCTTAGCGAGAACCACAGTAACCTAAAATTTTCGACCCTTTTTTCTCGATTACTTTTGCCTTTTGACAACTTTAAAACTTTCAAAAAAGTCGGAAATCTAAATCTTTCTAAATCGAAAGAATTGGCGGAAAACGGACGAAAAATGAGAAAAAAAAAATTGTTTTTTGAAAATTACGGTAGTCCGGCTGTGGCTGTGGCTGTGGCCCACCAGAGTCTCTCTCCACAACACCACTTTTATTTGTACCAGAATAATATAAAAATTTTGAAAAAAACTTACAATTAACAAATACAGCTAATAACAAAAGAGCAATGAGGCGTAATATCAAATTGTCTTTCCGCCTCTCGCTCATTTTTGGTGAGCAAAAARGGAGAAAAGTTGAAGAAAGAAGATGAACCTGAAAAGGCGGTAAATTGAAGTTGAGATAAAAGAGACAAAAGATTTCTCCGGGGAGAAAAAAGAGATGAAATGTTTCGATATACATAACGGAAGGATAATCGTGCGTTTCCGGACGAACTCGGGGAGCCAGGGACCGAATATTGAAGGAAGGCACGGAAGCGGAACGGAATGAGCAAAAAAATAGAATTTGTTGTTGAGAATATTGAGGTCAAGTGAAAACTATCTTTAACATTTCTTGTCTTTTGATATGTGATGGGTCTCAATATAAAGAGAAAAGAGGTCTAACAAAAAAAGAGAAAGGCTTAGTGGTTCTTTTGGAAAAAAGAGCTAAAAAAGAAGAGGTTATGTCACGAAACGTTTAATAAATCATTGGAATCGGTAAGGGTAGGTCAGGACAAAAAAGGGTTAGAAAAGTTATGATGTGAAGAAAAAAAAAATAGCTGAATGAACTCCAATGTTTTGAATAGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTTACAATTAACAAATACAGC</pcr_primer_p1>
		<pcr_primer_p2>ACGATTATCCTTCCGTTATGTAT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTTACAATTAACAAATACAGCTAATAACAAAAGAGCAATGAGGCGTAATATCAAATTGTCTTTCCGCCTCTCGCTCATTTTTGGTGAGCAAAAAAGGAGAAAAGTTGAAGAAAGAAGATGAACCTGAAAAGGCGGTAAATTGAAGTTGAGATAAAAGAGACAAAAGATTTCTCCGGGGAGAAAAAAGAGATGAAATGTTTCGATATACATAACGGAAGGATAATCGT</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTTACAATTAACAAATACAGCTAATAACAAAAGAGCAATGAGGCGTAATATCAAATTGTCTTTCCGCCTCTCGCTCATTTTTGGTGAGCAAAAARGGAGAAAAGTTGAAGAAAGAAGATGAACCTGAAAAGGCGGTAAATTGAAGTTGAGATAAAAGAGACAAAAGATTTCTCCGGGGAGAAAAAAGAGATGAAATGTTTCGATATACATAACGGAAGGATAATCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39515</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>79026</contig_pos>
        <strand>+</strand>
        <context>TGAAGAAAGA[A/G]GATGAACCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCCTCTCGCTCATTTTTGGTGAGCAAAAAAGGAGAAAAGTTGAAGAAAGA</left_flank>
        <right_flank>GATGAACCTGAAAAGGCGGTAAATTGAAGTTGAGATAAAAGAGACAAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGAAAGTCGCAATAGTGATTTTTGGGACTTCTTTTAAAAATTCTGATATCATGCTTGTATAAAAAATCGGAGATGCGAAGGAGAAAAGCTTGTGGGCGTGGCCAACGGTCCCCTTAGCGAGAACCACAGTAACCTAAAATTTTCGACCCTTTTTTCTCGATTACTTTTGCCTTTTGACAACTTTAAAACTTTCAAAAAAGTCGGAAATCTAAATCTTTCTAAATCGAAAGAATTGGCGGAAAACGGACGAAAAATGAGAAAAAAAAAATTGTTTTTTGAAAATTACGGTAGTCCGGCTGTGGCTGTGGCTGTGGCCCACCAGAGTCTCTCTCCACAACACCACTTTTATTTGTACCAGAATAATATAAAAATTTTGAAAAAAACTTACAATTAACAAATACAGCTAATAACAAAAGAGCAATGAGGCGTAATATCAAATTGTCTTTCCGCCTCTCGCTCATTTTTGGTGAGCAAAAAAGGAGAAAAGTTGAAGAAAGAAGATGAACCTGAAAAGGCGGTAAATTGAAGTTGAGATAAAAGAGACAAAAGATTTCTCCGGGGAGAAAAAAGAGATGAAATGTTTCGATATACATAACGGAAGGATAATCGTGCGTTTCCGGACGAACTCGGGGAGCCAGGGACCGAATATTGAAGGAAGGCACGGAAGCGGAACGGAATGAGCAAAAAAATAGAATTTGTTGTTGAGAATATTGAGGTCAAGTGAAAACTATCTTTAACATTTCTTGTCTTTTGATATGTGATGGGTCTCAATATAAAGAGAAAAGAGGTCTAACAAAAAAAGAGAAAGGCTTAGTGGTTCTTTTGGAAAAAAGAGCTAAAAAAGAAGAGGTTATGTCACGAAACGTTTAATAAATCATTGGAATCGGTAAGGGTAGGTCAGGACAAAAAAGGGTTAGAAAAGTTATGATGTGAAGAAAAAAAAAATAGCTGAATGAACTCCAATGTTTTGAATAGAATAAAAAAGAAGGAGAAATCGGG</canonical>
            <polymorphic>CTGAAAGTCGCAATAGTGATTTTTGGGACTTCTTTTAAAAATTCTGATATCATGCTTGTATAAAAAATCGGAGATGCGAAGGAGAAAAGCTTGTGGGCGTGGCCAACGGTCCCCTTAGCGAGAACCACAGTAACCTAAAATTTTCGACCCTTTTTTCTCGATTACTTTTGCCTTTTGACAACTTTAAAACTTTCAAAAAAGTCGGAAATCTAAATCTTTCTAAATCGAAAGAATTGGCGGAAAACGGACGAAAAATGAGAAAAAAAAAATTGTTTTTTGAAAATTACGGTAGTCCGGCTGTGGCTGTGGCTGTGGCCCACCAGAGTCTCTCTCCACAACACCACTTTTATTTGTACCAGAATAATATAAAAATTTTGAAAAAAACTTACAATTAACAAATACAGCTAATAACAAAAGAGCAATGAGGCGTAATATCAAATTGTCTTTCCGCCTCTCGCTCATTTTTGGTGAGCAAAAAAGGAGAAAAGTTGAAGAAAGARGATGAACCTGAAAAGGCGGTAAATTGAAGTTGAGATAAAAGAGACAAAAGATTTCTCCGGGGAGAAAAAAGAGATGAAATGTTTCGATATACATAACGGAAGGATAATCGTGCGTTTCCGGACGAACTCGGGGAGCCAGGGACCGAATATTGAAGGAAGGCACGGAAGCGGAACGGAATGAGCAAAAAAATAGAATTTGTTGTTGAGAATATTGAGGTCAAGTGAAAACTATCTTTAACATTTCTTGTCTTTTGATATGTGATGGGTCTCAATATAAAGAGAAAAGAGGTCTAACAAAAAAAGAGAAAGGCTTAGTGGTTCTTTTGGAAAAAAGAGCTAAAAAAGAAGAGGTTATGTCACGAAACGTTTAATAAATCATTGGAATCGGTAAGGGTAGGTCAGGACAAAAAAGGGTTAGAAAAGTTATGATGTGAAGAAAAAAAAAATAGCTGAATGAACTCCAATGTTTTGAATAGAATAAAAAAGAAGGAGAAATCGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTTACAATTAACAAATACAGC</pcr_primer_p1>
		<pcr_primer_p2>ACGATTATCCTTCCGTTATGTAT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTTACAATTAACAAATACAGCTAATAACAAAAGAGCAATGAGGCGTAATATCAAATTGTCTTTCCGCCTCTCGCTCATTTTTGGTGAGCAAAAAAGGAGAAAAGTTGAAGAAAGAAGATGAACCTGAAAAGGCGGTAAATTGAAGTTGAGATAAAAGAGACAAAAGATTTCTCCGGGGAGAAAAAAGAGATGAAATGTTTCGATATACATAACGGAAGGATAATCGT</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTTACAATTAACAAATACAGCTAATAACAAAAGAGCAATGAGGCGTAATATCAAATTGTCTTTCCGCCTCTCGCTCATTTTTGGTGAGCAAAAAAGGAGAAAAGTTGAAGAAAGARGATGAACCTGAAAAGGCGGTAAATTGAAGTTGAGATAAAAGAGACAAAAGATTTCTCCGGGGAGAAAAAAGAGATGAAATGTTTCGATATACATAACGGAAGGATAATCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39516</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>79045</contig_pos>
        <strand>+</strand>
        <context>TGAAAAGGCG[A/G]TRAATTGAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAGCAAAAAAGGAGAAAAGTTGAAGAAAGAAGATGAACCTGAAAAGGCG</left_flank>
        <right_flank>TAAATTGAAGTTGAGATAAAAGAGACAAAAGATTTCTCCGGGGAGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTGGGACTTCTTTTAAAAATTCTGATATCATGCTTGTATAAAAAATCGGAGATGCGAAGGAGAAAAGCTTGTGGGCGTGGCCAACGGTCCCCTTAGCGAGAACCACAGTAACCTAAAATTTTCGACCCTTTTTTCTCGATTACTTTTGCCTTTTGACAACTTTAAAACTTTCAAAAAAGTCGGAAATCTAAATCTTTCTAAATCGAAAGAATTGGCGGAAAACGGACGAAAAATGAGAAAAAAAAAATTGTTTTTTGAAAATTACGGTAGTCCGGCTGTGGCTGTGGCTGTGGCCCACCAGAGTCTCTCTCCACAACACCACTTTTATTTGTACCAGAATAATATAAAAATTTTGAAAAAAACTTACAATTAACAAATACAGCTAATAACAAAAGAGCAATGAGGCGTAATATCAAATTGTCTTTCCGCCTCTCGCTCATTTTTGGTGAGCAAAAAAGGAGAAAAGTTGAAGAAAGAAGATGAACCTGAAAAGGCGGTAAATTGAAGTTGAGATAAAAGAGACAAAAGATTTCTCCGGGGAGAAAAAAGAGATGAAATGTTTCGATATACATAACGGAAGGATAATCGTGCGTTTCCGGACGAACTCGGGGAGCCAGGGACCGAATATTGAAGGAAGGCACGGAAGCGGAACGGAATGAGCAAAAAAATAGAATTTGTTGTTGAGAATATTGAGGTCAAGTGAAAACTATCTTTAACATTTCTTGTCTTTTGATATGTGATGGGTCTCAATATAAAGAGAAAAGAGGTCTAACAAAAAAAGAGAAAGGCTTAGTGGTTCTTTTGGAAAAAAGAGCTAAAAAAGAAGAGGTTATGTCACGAAACGTTTAATAAATCATTGGAATCGGTAAGGGTAGGTCAGGACAAAAAAGGGTTAGAAAAGTTATGATGTGAAGAAAAAAAAAATAGCTGAATGAACTCCAATGTTTTGAATAGAATAAAAAAGAAGGAGAAATCGGGGAATAGAGCAAGAATTCGA</canonical>
            <polymorphic>TTTTTGGGACTTCTTTTAAAAATTCTGATATCATGCTTGTATAAAAAATCGGAGATGCGAAGGAGAAAAGCTTGTGGGCGTGGCCAACGGTCCCCTTAGCGAGAACCACAGTAACCTAAAATTTTCGACCCTTTTTTCTCGATTACTTTTGCCTTTTGACAACTTTAAAACTTTCAAAAAAGTCGGAAATCTAAATCTTTCTAAATCGAAAGAATTGGCGGAAAACGGACGAAAAATGAGAAAAAAAAAATTGTTTTTTGAAAATTACGGTAGTCCGGCTGTGGCTGTGGCTGTGGCCCACCAGAGTCTCTCTCCACAACACCACTTTTATTTGTACCAGAATAATATAAAAATTTTGAAAAAAACTTACAATTAACAAATACAGCTAATAACAAAAGAGCAATGAGGCGTAATATCAAATTGTCTTTCCGCCTCTCGCTCATTTTTGGTGAGCAAAAAAGGAGAAAAGTTGAAGAAAGAAGATGAACCTGAAAAGGCGRTAAATTGAAGTTGAGATAAAAGAGACAAAAGATTTCTCCGGGGAGAAAAAAGAGATGAAATGTTTCGATATACATAACGGAAGGATAATCGTGCGTTTCCGGACGAACTCGGGGAGCCAGGGACCGAATATTGAAGGAAGGCACGGAAGCGGAACGGAATGAGCAAAAAAATAGAATTTGTTGTTGAGAATATTGAGGTCAAGTGAAAACTATCTTTAACATTTCTTGTCTTTTGATATGTGATGGGTCTCAATATAAAGAGAAAAGAGGTCTAACAAAAAAAGAGAAAGGCTTAGTGGTTCTTTTGGAAAAAAGAGCTAAAAAAGAAGAGGTTATGTCACGAAACGTTTAATAAATCATTGGAATCGGTAAGGGTAGGTCAGGACAAAAAAGGGTTAGAAAAGTTATGATGTGAAGAAAAAAAAAATAGCTGAATGAACTCCAATGTTTTGAATAGAATAAAAAAGAAGGAGAAATCGGGGAATAGAGCAAGAATTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>504 217 212 67</canonical_bands>
                <polymorphic_bands>571 217 212</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTTACAATTAACAAATACAGC</pcr_primer_p1>
		<pcr_primer_p2>ACGATTATCCTTCCGTTATGTAT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTTACAATTAACAAATACAGCTAATAACAAAAGAGCAATGAGGCGTAATATCAAATTGTCTTTCCGCCTCTCGCTCATTTTTGGTGAGCAAAAAAGGAGAAAAGTTGAAGAAAGAAGATGAACCTGAAAAGGCGGTAAATTGAAGTTGAGATAAAAGAGACAAAAGATTTCTCCGGGGAGAAAAAAGAGATGAAATGTTTCGATATACATAACGGAAGGATAATCGT</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTTACAATTAACAAATACAGCTAATAACAAAAGAGCAATGAGGCGTAATATCAAATTGTCTTTCCGCCTCTCGCTCATTTTTGGTGAGCAAAAAAGGAGAAAAGTTGAAGAAAGAAGATGAACCTGAAAAGGCGRTAAATTGAAGTTGAGATAAAAGAGACAAAAGATTTCTCCGGGGAGAAAAAAGAGATGAAATGTTTCGATATACATAACGGAAGGATAATCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39517</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>79047</contig_pos>
        <strand>+</strand>
        <context>AAAAGGCGRT[A/G]AATTGAAGTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGCAAAAAAGGAGAAAAGTTGAAGAAAGAAGATGAACCTGAAAAGGCGGT</left_flank>
        <right_flank>AATTGAAGTTGAGATAAAAGAGACAAAAGATTTCTCCGGGGAGAAAAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGGACTTCTTTTAAAAATTCTGATATCATGCTTGTATAAAAAATCGGAGATGCGAAGGAGAAAAGCTTGTGGGCGTGGCCAACGGTCCCCTTAGCGAGAACCACAGTAACCTAAAATTTTCGACCCTTTTTTCTCGATTACTTTTGCCTTTTGACAACTTTAAAACTTTCAAAAAAGTCGGAAATCTAAATCTTTCTAAATCGAAAGAATTGGCGGAAAACGGACGAAAAATGAGAAAAAAAAAATTGTTTTTTGAAAATTACGGTAGTCCGGCTGTGGCTGTGGCTGTGGCCCACCAGAGTCTCTCTCCACAACACCACTTTTATTTGTACCAGAATAATATAAAAATTTTGAAAAAAACTTACAATTAACAAATACAGCTAATAACAAAAGAGCAATGAGGCGTAATATCAAATTGTCTTTCCGCCTCTCGCTCATTTTTGGTGAGCAAAAAAGGAGAAAAGTTGAAGAAAGAAGATGAACCTGAAAAGGCGGTAAATTGAAGTTGAGATAAAAGAGACAAAAGATTTCTCCGGGGAGAAAAAAGAGATGAAATGTTTCGATATACATAACGGAAGGATAATCGTGCGTTTCCGGACGAACTCGGGGAGCCAGGGACCGAATATTGAAGGAAGGCACGGAAGCGGAACGGAATGAGCAAAAAAATAGAATTTGTTGTTGAGAATATTGAGGTCAAGTGAAAACTATCTTTAACATTTCTTGTCTTTTGATATGTGATGGGTCTCAATATAAAGAGAAAAGAGGTCTAACAAAAAAAGAGAAAGGCTTAGTGGTTCTTTTGGAAAAAAGAGCTAAAAAAGAAGAGGTTATGTCACGAAACGTTTAATAAATCATTGGAATCGGTAAGGGTAGGTCAGGACAAAAAAGGGTTAGAAAAGTTATGATGTGAAGAAAAAAAAAATAGCTGAATGAACTCCAATGTTTTGAATAGAATAAAAAAGAAGGAGAAATCGGGGAATAGAGCAAGAATTCGATT</canonical>
            <polymorphic>TTTGGGACTTCTTTTAAAAATTCTGATATCATGCTTGTATAAAAAATCGGAGATGCGAAGGAGAAAAGCTTGTGGGCGTGGCCAACGGTCCCCTTAGCGAGAACCACAGTAACCTAAAATTTTCGACCCTTTTTTCTCGATTACTTTTGCCTTTTGACAACTTTAAAACTTTCAAAAAAGTCGGAAATCTAAATCTTTCTAAATCGAAAGAATTGGCGGAAAACGGACGAAAAATGAGAAAAAAAAAATTGTTTTTTGAAAATTACGGTAGTCCGGCTGTGGCTGTGGCTGTGGCCCACCAGAGTCTCTCTCCACAACACCACTTTTATTTGTACCAGAATAATATAAAAATTTTGAAAAAAACTTACAATTAACAAATACAGCTAATAACAAAAGAGCAATGAGGCGTAATATCAAATTGTCTTTCCGCCTCTCGCTCATTTTTGGTGAGCAAAAAAGGAGAAAAGTTGAAGAAAGAAGATGAACCTGAAAAGGCGGTRAATTGAAGTTGAGATAAAAGAGACAAAAGATTTCTCCGGGGAGAAAAAAGAGATGAAATGTTTCGATATACATAACGGAAGGATAATCGTGCGTTTCCGGACGAACTCGGGGAGCCAGGGACCGAATATTGAAGGAAGGCACGGAAGCGGAACGGAATGAGCAAAAAAATAGAATTTGTTGTTGAGAATATTGAGGTCAAGTGAAAACTATCTTTAACATTTCTTGTCTTTTGATATGTGATGGGTCTCAATATAAAGAGAAAAGAGGTCTAACAAAAAAAGAGAAAGGCTTAGTGGTTCTTTTGGAAAAAAGAGCTAAAAAAGAAGAGGTTATGTCACGAAACGTTTAATAAATCATTGGAATCGGTAAGGGTAGGTCAGGACAAAAAAGGGTTAGAAAAGTTATGATGTGAAGAAAAAAAAAATAGCTGAATGAACTCCAATGTTTTGAATAGAATAAAAAAGAAGGAGAAATCGGGGAATAGAGCAAGAATTCGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAAACTTACAATTAACAAATACAGC</pcr_primer_p1>
		<pcr_primer_p2>ACGATTATCCTTCCGTTATGTAT</pcr_primer_p2>
		<pcr_amplicon_size>232</pcr_amplicon_size>
		<canonical_amplicon>AAAAACTTACAATTAACAAATACAGCTAATAACAAAAGAGCAATGAGGCGTAATATCAAATTGTCTTTCCGCCTCTCGCTCATTTTTGGTGAGCAAAAAAGGAGAAAAGTTGAAGAAAGAAGATGAACCTGAAAAGGCGGTAAATTGAAGTTGAGATAAAAGAGACAAAAGATTTCTCCGGGGAGAAAAAAGAGATGAAATGTTTCGATATACATAACGGAAGGATAATCGT</canonical_amplicon>
		<polymorphic_amplicon>AAAAACTTACAATTAACAAATACAGCTAATAACAAAAGAGCAATGAGGCGTAATATCAAATTGTCTTTCCGCCTCTCGCTCATTTTTGGTGAGCAAAAAAGGAGAAAAGTTGAAGAAAGAAGATGAACCTGAAAAGGCGGTRAATTGAAGTTGAGATAAAAGAGACAAAAGATTTCTCCGGGGAGAAAAAAGAGATGAAATGTTTCGATATACATAACGGAAGGATAATCGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39518</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>79317</contig_pos>
        <strand>+</strand>
        <context>GAAAAGAGGT[C/G]TAACAAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTTCTTGTCTTTTGATATGTGATGGGTCTCAATATAAAGAGAAAAGAGGT</left_flank>
        <right_flank>TAACAAAAAAAGAGAAAGGCTTAGTGGTTCTTTTGGAAAAAAGAGCTAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCCGGCTGTGGCTGTGGCTGTGGCCCACCAGAGTCTCTCTCCACAACACCACTTTTATTTGTACCAGAATAATATAAAAATTTTGAAAAAAACTTACAATTAACAAATACAGCTAATAACAAAAGAGCAATGAGGCGTAATATCAAATTGTCTTTCCGCCTCTCGCTCATTTTTGGTGAGCAAAAAAGGAGAAAAGTTGAAGAAAGAAGATGAACCTGAAAAGGCGGTAAATTGAAGTTGAGATAAAAGAGACAAAAGATTTCTCCGGGGAGAAAAAAGAGATGAAATGTTTCGATATACATAACGGAAGGATAATCGTGCGTTTCCGGACGAACTCGGGGAGCCAGGGACCGAATATTGAAGGAAGGCACGGAAGCGGAACGGAATGAGCAAAAAAATAGAATTTGTTGTTGAGAATATTGAGGTCAAGTGAAAACTATCTTTAACATTTCTTGTCTTTTGATATGTGATGGGTCTCAATATAAAGAGAAAAGAGGTCTAACAAAAAAAGAGAAAGGCTTAGTGGTTCTTTTGGAAAAAAGAGCTAAAAAAGAAGAGGTTATGTCACGAAACGTTTAATAAATCATTGGAATCGGTAAGGGTAGGTCAGGACAAAAAAGGGTTAGAAAAGTTATGATGTGAAGAAAAAAAAAATAGCTGAATGAACTCCAATGTTTTGAATAGAATAAAAAAGAAGGAGAAATCGGGGAATAGAGCAAGAATTCGATTGTGGGAAAATAGTGATTTGAGAGAAAAGAAACGGGATAGATGTATAGAAAAATGGATTTATGTACAAATGGAGAAAAAATGGGAAGGAATACTTTAAGAGGTCGAATAAAGGATTCAACAGGAGGAAAGGGAAAGAAGGGGTCAACAAAAACAAATTTCAGAATAAGCAAGCTCATGGAAAACGTTCTGAAAAAAAAAGTGGATTCAAGAGTGAAATCCTTTTCGAAAATTCGATTACCGTATTTCCTCTAATAGAGGCCTACCTCTAAT</canonical>
            <polymorphic>GTCCGGCTGTGGCTGTGGCTGTGGCCCACCAGAGTCTCTCTCCACAACACCACTTTTATTTGTACCAGAATAATATAAAAATTTTGAAAAAAACTTACAATTAACAAATACAGCTAATAACAAAAGAGCAATGAGGCGTAATATCAAATTGTCTTTCCGCCTCTCGCTCATTTTTGGTGAGCAAAAAAGGAGAAAAGTTGAAGAAAGAAGATGAACCTGAAAAGGCGGTAAATTGAAGTTGAGATAAAAGAGACAAAAGATTTCTCCGGGGAGAAAAAAGAGATGAAATGTTTCGATATACATAACGGAAGGATAATCGTGCGTTTCCGGACGAACTCGGGGAGCCAGGGACCGAATATTGAAGGAAGGCACGGAAGCGGAACGGAATGAGCAAAAAAATAGAATTTGTTGTTGAGAATATTGAGGTCAAGTGAAAACTATCTTTAACATTTCTTGTCTTTTGATATGTGATGGGTCTCAATATAAAGAGAAAAGAGGTSTAACAAAAAAAGAGAAAGGCTTAGTGGTTCTTTTGGAAAAAAGAGCTAAAAAAGAAGAGGTTATGTCACGAAACGTTTAATAAATCATTGGAATCGGTAAGGGTAGGTCAGGACAAAAAAGGGTTAGAAAAGTTATGATGTGAAGAAAAAAAAAATAGCTGAATGAACTCCAATGTTTTGAATAGAATAAAAAAGAAGGAGAAATCGGGGAATAGAGCAAGAATTCGATTGTGGGAAAATAGTGATTTGAGAGAAAAGAAACGGGATAGATGTATAGAAAAATGGATTTATGTACAAATGGAGAAAAAATGGGAAGGAATACTTTAAGAGGTCGAATAAAGGATTCAACAGGAGGAAAGGGAAAGAAGGGGTCAACAAAAACAAATTTCAGAATAAGCAAGCTCATGGAAAACGTTCTGAAAAAAAAAGTGGATTCAAGAGTGAAATCCTTTTCGAAAATTCGATTACCGTATTTCCTCTAATAGAGGCCTACCTCTAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTTTAACATTTCTTGTCTTTTGA</pcr_primer_p1>
		<pcr_primer_p2>TTCTATTCAAAACATTGGAGTTC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TCTTTAACATTTCTTGTCTTTTGATATGTGATGGGTCTCAATATAAAGAGAAAAGAGGTCTAACAAAAAAAGAGAAAGGCTTAGTGGTTCTTTTGGAAAAAAGAGCTAAAAAAGAAGAGGTTATGTCACGAAACGTTTAATAAATCATTGGAATCGGTAAGGGTAGGTCAGGACAAAAAAGGGTTAGAAAAGTTATGATGTGAAGAAAAAAAAAATAGCTGAATGAACTCCAATGTTTTGAATAGAA</canonical_amplicon>
		<polymorphic_amplicon>TCTTTAACATTTCTTGTCTTTTGATATGTGATGGGTCTCAATATAAAGAGAAAAGAGGTSTAACAAAAAAAGAGAAAGGCTTAGTGGTTCTTTTGGAAAAAAGAGCTAAAAAAGAAGAGGTTATGTCACGAAACGTTTAATAAATCATTGGAATCGGTAAGGGTAGGTCAGGACAAAAAAGGGTTAGAAAAGTTATGATGTGAAGAAAAAAAAAATAGCTGAATGAACTCCAATGTTTTGAATAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39519</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>92847</contig_pos>
        <strand></strand>
        <context>TAAAAAAATT[A/T]CAAATCCAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATCCAAATTTCCCGAAAATTCAAAAGTTTCAAAATCCAATAAAAAAATT</left_flank>
        <right_flank>CAAATCCAGACATAAAAATTTTTCAGAAATTCAAAAATCCTAAAAAATCT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAACAGAAACGGGCACCGGTCCGTTTGGATCCATAAGCAGGAAAAGAAGAAAAAGAAGAGAGGACAGCTGCATTTGATCACAAAAGATTTCCCATGAGAAGAGGAAAAGGGAACAGTATTTGTACAAGCAAACATTTGACAACATGACACATACAGGTGACCATGAGTGATGAGAGAATCCACTCAAAAATATTCACTACGTTTGAATTTTTACCAAAATGGATCAATTTTTTGAAAGTTTAGCTGGAAGACTTGACATATTCAAAAATATTTTTTAACAGAAAGTGCTCTACAATTGAACAATTTTCTGAAAATGCCAAAAATTTCACAAAATTAAGAAATTCCCATAAATAATTATAAAATCCTAAAATTCGAAAAATTAAAAATTTGAAAAATACTAAAAAAGTCCTAAAAATTCCGAACATTATAATTTTTCAAGAATTCAAAAATCCAAATTTCCCGAAAATTCAAAAGTTTCAAAATCCAATAAAAAAATTACAAATCCAGACATAAAAATTTTTCAGAAATTCAAAAATCCTAAAAAATCTAAAATTCCGAAAATTCGACCTTCAAATTTTTCAGGAGTTCAAAAATGAGACATATTCAAACATCCAAACATTTAAAGTTTTCAGTAATTTGAAAGTCATAAAAATTCAAAATTTTGAACATTTGAAAAACTTCCAAAATCCAAAAGTTTCAAATTTTCCAGAATTCAAAAGTCTACTGTTTAAAAATCTACCGTTTAAATGAAATTCTCCTCATTTCAGTCTGAATTTTGCAGAATCCGACAAAAAAGATATTCAAAGATTAGAAGATTGGATATCTGCAATCCTACATTTTAAAAAAGATCATAAATTCCAATGCTCGATGCAAGATCATAACTATTATTATCGGATCTTGAATTCCAATTTATTGACTGGAATTCGAAAATTGTTTATTTTGGGTACAGCAAATCCGTGAGAAAGTATGCAAAGCTAGAAGAACAAGAAATAATAATA</canonical>
            <polymorphic>GAAAACAGAAACGGGCACCGGTCCGTTTGGATCCATAAGCAGGAAAAGAAGAAAAAGAAGAGAGGACAGCTGCATTTGATCACAAAAGATTTCCCATGAGAAGAGGAAAAGGGAACAGTATTTGTACAAGCAAACATTTGACAACATGACACATACAGGTGACCATGAGTGATGAGAGAATCCACTCAAAAATATTCACTACGTTTGAATTTTTACCAAAATGGATCAATTTTTTGAAAGTTTAGCTGGAAGACTTGACATATTCAAAAATATTTTTTAACAGAAAGTGCTCTACAATTGAACAATTTTCTGAAAATGCCAAAAATTTCACAAAATTAAGAAATTCCCATAAATAATTATAAAATCCTAAAATTCGAAAAATTAAAAATTTGAAAAATACTAAAAAAGTCCTAAAAATTCCGAACATTATAATTTTTCAAGAATTCAAAAATCCAAATTTCCCGAAAATTCAAAAGTTTCAAAATCCAATAAAAAAATTWCAAATCCAGACATAAAAATTTTTCAGAAATTCAAAAATCCTAAAAAATCTAAAATTCCGAAAATTCGACCTTCAAATTTTTCAGGAGTTCAAAAATGAGACATATTCAAACATCCAAACATTTAAAGTTTTCAGTAATTTGAAAGTCATAAAAATTCAAAATTTTGAACATTTGAAAAACTTCCAAAATCCAAAAGTTTCAAATTTTCCAGAATTCAAAAGTCTACTGTTTAAAAATCTACCGTTTAAATGAAATTCTCCTCATTTCAGTCTGAATTTTGCAGAATCCGACAAAAAAGATATTCAAAGATTAGAAGATTGGATATCTGCAATCCTACATTTTAAAAAAGATCATAAATTCCAATGCTCGATGCAAGATCATAACTATTATTATCGGATCTTGAATTCCAATTTATTGACTGGAATTCGAAAATTGTTTATTTTGGGTACAGCAAATCCGTGAGAAAGTATGCAAAGCTAGAAGAACAAGAAATAATAATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTCCTAAAAATTCCGAACATTA</pcr_primer_p1>
		<pcr_primer_p2>TGACTTTCAAATTACTGAAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>AGTCCTAAAAATTCCGAACATTATAATTTTTCAAGAATTCAAAAATCCAAATTTCCCGAAAATTCAAAAGTTTCAAAATCCAATAAAAAAATTACAAATCCAGACATAAAAATTTTTCAGAAATTCAAAAATCCTAAAAAATCTAAAATTCCGAAAATTCGACCTTCAAATTTTTCAGGAGTTCAAAAATGAGACATATTCAAACATCCAAACATTTAAAGTTTTCAGTAATTTGAAAGTCA</canonical_amplicon>
		<polymorphic_amplicon>AGTCCTAAAAATTCCGAACATTATAATTTTTCAAGAATTCAAAAATCCAAATTTCCCGAAAATTCAAAAGTTTCAAAATCCAATAAAAAAATTWCAAATCCAGACATAAAAATTTTTCAGAAATTCAAAAATCCTAAAAAATCTAAAATTCCGAAAATTCGACCTTCAAATTTTTCAGGAGTTCAAAAATGAGACATATTCAAACATCCAAACATTTAAAGTTTTCAGTAATTTGAAAGTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39520</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>154639</contig_pos>
        <strand></strand>
        <context>GGCGTTTTTG[A/T]GTTGATATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTGGATTCTTTTATCTATTCATTATTTACCTGGTTCATCAGGCGTTTTTG</left_flank>
        <right_flank>GTTGATATAAACGACAGTGAGAAAAACCAGAAGCGCGACAAGCGGTATAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTGCCCTGTCTCTGTCAAAAACCAAAGTTTTCTAGTCTAATTGACTATCTAATCACTCTTTTCTCTTACTCCAACTTGTGTTAATTAACCCATTTATTTTCTCATCAAGGTAGAACATTATGAGAACCGTTCATTCACTATATTCATCAATTATAACTAACATGTATAATATAGATCTATAGATCCCATCCTTTTTTCAATCCGATTTCTTTGTGTCCGGCTCCTTCCCGTGAGTTTTCTGCGTCGCTTTTTTCAGAGCTGTGTCTGAAACAAAAAAAATTTGCTACCCCATTTTTAAAAAAATATTAGATTAGAGCAACAATTTTTCTATGTTGTTATTACCTTGTAGATTCTCAATCATAATCTAAAGCTATACGAGAATGCAGCTTCTGATAAAAATATTCTTATATTTTTGTTTCCTATTTTTTTACGTTCCGGTTTTCAATCTGGATTCTTTTATCTATTCATTATTTACCTGGTTCATCAGGCGTTTTTGAGTTGATATAAACGACAGTGAGAAAAACCAGAAGCGCGACAAGCGGTATAAACACGTGTACAGCTGAAAATGTCGTAATGAGTATGCCGTGCTGTTATGAATAACTTACATTCGACTAGATTATAGACGGCGTCCATCGTGTGTGTGTGTGTGTAGTAATGTTGTGGGTGTTGACTCGCCTTTTCTTAGAGCAACGCGCTCTCTCCTACTACGTTTGATCGATTTTGAGAAAGCGTTGAAGAAACGAAAAGAAAGCGGAAAGGAGGCTCGAATAAGAAAAAGAAGACGCCTTCTTTGACATCCAGTGTAATAAAAATAGGACCACTGCGAATTTTGTCGATGTAGTACCAACTCAAAAACAATTTTATGTTTGAATGAAAAAAAAGTTATAATTGAAGAGGAATGGCAACTGGTAACCGTGTTCCCGAGAACTTTCAAACTCTGTCTCCGATTGTGAAGGCTCCTTTGTCCGACACGCTTTCGGTGCCACTCTCGCAGCAG</canonical>
            <polymorphic>ATTTTGCCCTGTCTCTGTCAAAAACCAAAGTTTTCTAGTCTAATTGACTATCTAATCACTCTTTTCTCTTACTCCAACTTGTGTTAATTAACCCATTTATTTTCTCATCAAGGTAGAACATTATGAGAACCGTTCATTCACTATATTCATCAATTATAACTAACATGTATAATATAGATCTATAGATCCCATCCTTTTTTCAATCCGATTTCTTTGTGTCCGGCTCCTTCCCGTGAGTTTTCTGCGTCGCTTTTTTCAGAGCTGTGTCTGAAACAAAAAAAATTTGCTACCCCATTTTTAAAAAAATATTAGATTAGAGCAACAATTTTTCTATGTTGTTATTACCTTGTAGATTCTCAATCATAATCTAAAGCTATACGAGAATGCAGCTTCTGATAAAAATATTCTTATATTTTTGTTTCCTATTTTTTTACGTTCCGGTTTTCAATCTGGATTCTTTTATCTATTCATTATTTACCTGGTTCATCAGGCGTTTTTGWGTTGATATAAACGACAGTGAGAAAAACCAGAAGCGCGACAAGCGGTATAAACACGTGTACAGCTGAAAATGTCGTAATGAGTATGCCGTGCTGTTATGAATAACTTACATTCGACTAGATTATAGACGGCGTCCATCGTGTGTGTGTGTGTGTAGTAATGTTGTGGGTGTTGACTCGCCTTTTCTTAGAGCAACGCGCTCTCTCCTACTACGTTTGATCGATTTTGAGAAAGCGTTGAAGAAACGAAAAGAAAGCGGAAAGGAGGCTCGAATAAGAAAAAGAAGACGCCTTCTTTGACATCCAGTGTAATAAAAATAGGACCACTGCGAATTTTGTCGATGTAGTACCAACTCAAAAACAATTTTATGTTTGAATGAAAAAAAAGTTATAATTGAAGAGGAATGGCAACTGGTAACCGTGTTCCCGAGAACTTTCAAACTCTGTCTCCGATTGTGAAGGCTCCTTTGTCCGACACGCTTTCGGTGCCACTCTCGCAGCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATGCAGCTTCTGATAAAAATA</pcr_primer_p1>
		<pcr_primer_p2>CCGTCTATAATCTAGTCGAATGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAATGCAGCTTCTGATAAAAATATTCTTATATTTTTGTTTCCTATTTTTTTACGTTCCGGTTTTCAATCTGGATTCTTTTATCTATTCATTATTTACCTGGTTCATCAGGCGTTTTTGAGTTGATATAAACGACAGTGAGAAAAACCAGAAGCGCGACAAGCGGTATAAACACGTGTACAGCTGAAAATGTCGTAATGAGTATGCCGTGCTGTTATGAATAACTTACATTCGACTAGATTATAGACGG</canonical_amplicon>
		<polymorphic_amplicon>GAATGCAGCTTCTGATAAAAATATTCTTATATTTTTGTTTCCTATTTTTTTACGTTCCGGTTTTCAATCTGGATTCTTTTATCTATTCATTATTTACCTGGTTCATCAGGCGTTTTTGWGTTGATATAAACGACAGTGAGAAAAACCAGAAGCGCGACAAGCGGTATAAACACGTGTACAGCTGAAAATGTCGTAATGAGTATGCCGTGCTGTTATGAATAACTTACATTCGACTAGATTATAGACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39521</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>154679</contig_pos>
        <strand></strand>
        <context>GAAGCGCGAC[A/G]AGCGGTATAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGCGTTTTTGAGTTGATATAAACGACAGTGAGAAAAACCAGAAGCGCGAC</left_flank>
        <right_flank>AGCGGTATAAACACGTGTACAGCTGAAAATGTCGTAATGAGTATGCCGTG</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTGACTATCTAATCACTCTTTTCTCTTACTCCAACTTGTGTTAATTAACCCATTTATTTTCTCATCAAGGTAGAACATTATGAGAACCGTTCATTCACTATATTCATCAATTATAACTAACATGTATAATATAGATCTATAGATCCCATCCTTTTTTCAATCCGATTTCTTTGTGTCCGGCTCCTTCCCGTGAGTTTTCTGCGTCGCTTTTTTCAGAGCTGTGTCTGAAACAAAAAAAATTTGCTACCCCATTTTTAAAAAAATATTAGATTAGAGCAACAATTTTTCTATGTTGTTATTACCTTGTAGATTCTCAATCATAATCTAAAGCTATACGAGAATGCAGCTTCTGATAAAAATATTCTTATATTTTTGTTTCCTATTTTTTTACGTTCCGGTTTTCAATCTGGATTCTTTTATCTATTCATTATTTACCTGGTTCATCAGGCGTTTTTGAGTTGATATAAACGACAGTGAGAAAAACCAGAAGCGCGACAAGCGGTATAAACACGTGTACAGCTGAAAATGTCGTAATGAGTATGCCGTGCTGTTATGAATAACTTACATTCGACTAGATTATAGACGGCGTCCATCGTGTGTGTGTGTGTGTAGTAATGTTGTGGGTGTTGACTCGCCTTTTCTTAGAGCAACGCGCTCTCTCCTACTACGTTTGATCGATTTTGAGAAAGCGTTGAAGAAACGAAAAGAAAGCGGAAAGGAGGCTCGAATAAGAAAAAGAAGACGCCTTCTTTGACATCCAGTGTAATAAAAATAGGACCACTGCGAATTTTGTCGATGTAGTACCAACTCAAAAACAATTTTATGTTTGAATGAAAAAAAAGTTATAATTGAAGAGGAATGGCAACTGGTAACCGTGTTCCCGAGAACTTTCAAACTCTGTCTCCGATTGTGAAGGCTCCTTTGTCCGACACGCTTTCGGTGCCACTCTCGCAGCAGGGACGTATCTGTGGATTCTTCGAGTCTCAATTCTATCGAT</canonical>
            <polymorphic>TAATTGACTATCTAATCACTCTTTTCTCTTACTCCAACTTGTGTTAATTAACCCATTTATTTTCTCATCAAGGTAGAACATTATGAGAACCGTTCATTCACTATATTCATCAATTATAACTAACATGTATAATATAGATCTATAGATCCCATCCTTTTTTCAATCCGATTTCTTTGTGTCCGGCTCCTTCCCGTGAGTTTTCTGCGTCGCTTTTTTCAGAGCTGTGTCTGAAACAAAAAAAATTTGCTACCCCATTTTTAAAAAAATATTAGATTAGAGCAACAATTTTTCTATGTTGTTATTACCTTGTAGATTCTCAATCATAATCTAAAGCTATACGAGAATGCAGCTTCTGATAAAAATATTCTTATATTTTTGTTTCCTATTTTTTTACGTTCCGGTTTTCAATCTGGATTCTTTTATCTATTCATTATTTACCTGGTTCATCAGGCGTTTTTGAGTTGATATAAACGACAGTGAGAAAAACCAGAAGCGCGACRAGCGGTATAAACACGTGTACAGCTGAAAATGTCGTAATGAGTATGCCGTGCTGTTATGAATAACTTACATTCGACTAGATTATAGACGGCGTCCATCGTGTGTGTGTGTGTGTAGTAATGTTGTGGGTGTTGACTCGCCTTTTCTTAGAGCAACGCGCTCTCTCCTACTACGTTTGATCGATTTTGAGAAAGCGTTGAAGAAACGAAAAGAAAGCGGAAAGGAGGCTCGAATAAGAAAAAGAAGACGCCTTCTTTGACATCCAGTGTAATAAAAATAGGACCACTGCGAATTTTGTCGATGTAGTACCAACTCAAAAACAATTTTATGTTTGAATGAAAAAAAAGTTATAATTGAAGAGGAATGGCAACTGGTAACCGTGTTCCCGAGAACTTTCAAACTCTGTCTCCGATTGTGAAGGCTCCTTTGTCCGACACGCTTTCGGTGCCACTCTCGCAGCAGGGACGTATCTGTGGATTCTTCGAGTCTCAATTCTATCGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAATGCAGCTTCTGATAAAAATA</pcr_primer_p1>
		<pcr_primer_p2>CCGTCTATAATCTAGTCGAATGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAATGCAGCTTCTGATAAAAATATTCTTATATTTTTGTTTCCTATTTTTTTACGTTCCGGTTTTCAATCTGGATTCTTTTATCTATTCATTATTTACCTGGTTCATCAGGCGTTTTTGAGTTGATATAAACGACAGTGAGAAAAACCAGAAGCGCGACAAGCGGTATAAACACGTGTACAGCTGAAAATGTCGTAATGAGTATGCCGTGCTGTTATGAATAACTTACATTCGACTAGATTATAGACGG</canonical_amplicon>
		<polymorphic_amplicon>GAATGCAGCTTCTGATAAAAATATTCTTATATTTTTGTTTCCTATTTTTTTACGTTCCGGTTTTCAATCTGGATTCTTTTATCTATTCATTATTTACCTGGTTCATCAGGCGTTTTTGAGTTGATATAAACGACAGTGAGAAAAACCAGAAGCGCGACRAGCGGTATAAACACGTGTACAGCTGAAAATGTCGTAATGAGTATGCCGTGCTGTTATGAATAACTTACATTCGACTAGATTATAGACGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39522</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>207390</contig_pos>
        <strand></strand>
        <context>ttttagttga[A/C]tactttttga</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTGGCTGGCAAAATGCTTATCATAACATCAACAACATTTTTTTAGTTGA</left_flank>
        <right_flank>TACTTTTTGATATCTTTCATAGAAAGACGATTTGAGAGTATTCTATTATA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGCTTCTGAACAACTGTATCAACATCATCTCCAACGTATCCAGCTTGTGTCAGCGTTGTACAATCACAAATGACAATCGGAACATCTAGAACTTCAGCCAACTTTTGAGTCATGTATGTCTTGCCAGTTCCTGATGCACCGAGAAGAATCATGTTTGATTTTTCAAGAAGGATATCCTGACGTTTCTCCAGATCCTTCAAAACTTGACGTTGTGATTTTTCAATGTATTCTGGAAGATATTCCTCCTCGATTTCGGGATTCTGTTTCCTTAATTTCTTCCGTTCTTTAGCAGCAGCTACGGCTTCAGAGAGCATCCATTGCTGAAACAAATGTCTTTATAAATATTTGTAAACACCGAAAAATACAGTAAACACTCTAATAGAATACCACACAAACCGTCCACTTTGATCTCAAATATCTCATTTCCTGTTGAAGTTTTAAAAAAGTGATTGGCTGGCAAAATGCTTATCATAACATCAACAACATTTTTTTAGTTGAATACTTTTTGATATCTTTCATAGAAAGACGATTTGAGAGTATTCTATTATAGGTTTATGGTGGTTCGATTGTTTTCTAGATTTTATATCAAAACCAATGTTATGATCCTAAATCTAATAAAGACATTTTTTCGAAAGATGTGTATTCGATGTTTGACCCCATTACCTCCGTAACTCTCAAATTGTTTTCAACTCTTCTGTAGTGTTGATATACAGCAACAGCAAGACACTTTTTTGCTGTCTCCTGTCCGACAACATACTTATTCAGATGTTCGACGATTTCTCTGAAATATCAAAGTCTCAAAGAATCGAATATCCATTTTAAATACTAACTTTGGATACAAAATGTGCATTTTTTCACTTCTTCCTCCATCTCTTCCAAATTTAGCCAATCCATTTGGTGGCTGATGGGTCAACGCGCTCTGAATAAGTGTTGCTCCAGAAATGAAGCCTTCTTCAATAACAAAAGGAAGAGAATCCGTTTTCTTGGAAATTTTCTTAG</canonical>
            <polymorphic>CAGCTTCTGAACAACTGTATCAACATCATCTCCAACGTATCCAGCTTGTGTCAGCGTTGTACAATCACAAATGACAATCGGAACATCTAGAACTTCAGCCAACTTTTGAGTCATGTATGTCTTGCCAGTTCCTGATGCACCGAGAAGAATCATGTTTGATTTTTCAAGAAGGATATCCTGACGTTTCTCCAGATCCTTCAAAACTTGACGTTGTGATTTTTCAATGTATTCTGGAAGATATTCCTCCTCGATTTCGGGATTCTGTTTCCTTAATTTCTTCCGTTCTTTAGCAGCAGCTACGGCTTCAGAGAGCATCCATTGCTGAAACAAATGTCTTTATAAATATTTGTAAACACCGAAAAATACAGTAAACACTCTAATAGAATACCACACAAACCGTCCACTTTGATCTCAAATATCTCATTTCCTGTTGAAGTTTTAAAAAAGTGATTGGCTGGCAAAATGCTTATCATAACATCAACAACATTTTTTTAGTTGAMTACTTTTTGATATCTTTCATAGAAAGACGATTTGAGAGTATTCTATTATAGGTTTATGGTGGTTCGATTGTTTTCTAGATTTTATATCAAAACCAATGTTATGATCCTAAATCTAATAAAGACATTTTTTCGAAAGATGTGTATTCGATGTTTGACCCCATTACCTCCGTAACTCTCAAATTGTTTTCAACTCTTCTGTAGTGTTGATATACAGCAACAGCAAGACACTTTTTTGCTGTCTCCTGTCCGACAACATACTTATTCAGATGTTCGACGATTTCTCTGAAATATCAAAGTCTCAAAGAATCGAATATCCATTTTAAATACTAACTTTGGATACAAAATGTGCATTTTTTCACTTCTTCCTCCATCTCTTCCAAATTTAGCCAATCCATTTGGTGGCTGATGGGTCAACGCGCTCTGAATAAGTGTTGCTCCAGAAATGAAGCCTTCTTCAATAACAAAAGGAAGAGAATCCGTTTTCTTGGAAATTTTCTTAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGCTGAAACAAATGTCTTTAT</pcr_primer_p1>
		<pcr_primer_p2>CGAACCACCATAAACCTATAAT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATTGCTGAAACAAATGTCTTTATAAATATTTGTAAACACCGAAAAATACAGTAAACACTCTAATAGAATACCACACAAACCGTCCACTTTGATCTCAAATATCTCATTTCCTGTTGAAGTTTTAAAAAAGTGATTGGCTGGCAAAATGCTTATCATAACATCAACAACATTTTTTTAGTTGAATACTTTTTGATATCTTTCATAGAAAGACGATTTGAGAGTATTCTATTATAGGTTTATGGTGGTTCG</canonical_amplicon>
		<polymorphic_amplicon>ATTGCTGAAACAAATGTCTTTATAAATATTTGTAAACACCGAAAAATACAGTAAACACTCTAATAGAATACCACACAAACCGTCCACTTTGATCTCAAATATCTCATTTCCTGTTGAAGTTTTAAAAAAGTGATTGGCTGGCAAAATGCTTATCATAACATCAACAACATTTTTTTAGTTGAMTACTTTTTGATATCTTTCATAGAAAGACGATTTGAGAGTATTCTATTATAGGTTTATGGTGGTTCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39523</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>207535</contig_pos>
        <strand></strand>
        <context>AGATGTGTAT[T/C]CGATGTTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATGTTATGATCCTAAATCTAATAAAGACATTTTTTCGAAAGATGTGTAT</left_flank>
        <right_flank>CGATGTTTGACCCCATTACCTCCGTAACTCTCAAATTGTTTTCAACTCTT</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAATCATGTTTGATTTTTCAAGAAGGATATCCTGACGTTTCTCCAGATCCTTCAAAACTTGACGTTGTGATTTTTCAATGTATTCTGGAAGATATTCCTCCTCGATTTCGGGATTCTGTTTCCTTAATTTCTTCCGTTCTTTAGCAGCAGCTACGGCTTCAGAGAGCATCCATTGCTGAAACAAATGTCTTTATAAATATTTGTAAACACCGAAAAATACAGTAAACACTCTAATAGAATACCACACAAACCGTCCACTTTGATCTCAAATATCTCATTTCCTGTTGAAGTTTTAAAAAAGTGATTGGCTGGCAAAATGCTTATCATAACATCAACAACATTTTTTTAGTTGAATACTTTTTGATATCTTTCATAGAAAGACGATTTGAGAGTATTCTATTATAGGTTTATGGTGGTTCGATTGTTTTCTAGATTTTATATCAAAACCAATGTTATGATCCTAAATCTAATAAAGACATTTTTTCGAAAGATGTGTATTCGATGTTTGACCCCATTACCTCCGTAACTCTCAAATTGTTTTCAACTCTTCTGTAGTGTTGATATACAGCAACAGCAAGACACTTTTTTGCTGTCTCCTGTCCGACAACATACTTATTCAGATGTTCGACGATTTCTCTGAAATATCAAAGTCTCAAAGAATCGAATATCCATTTTAAATACTAACTTTGGATACAAAATGTGCATTTTTTCACTTCTTCCTCCATCTCTTCCAAATTTAGCCAATCCATTTGGTGGCTGATGGGTCAACGCGCTCTGAATAAGTGTTGCTCCAGAAATGAAGCCTTCTTCAATAACAAAAGGAAGAGAATCCGTTTTCTTGGAAATTTTCTTAGCATGAATTACTCTTCGATCAGATTTCCCTCTAAAACTGCGGATTTTCTAGGACCCCCTCAAACTCTGGTTACCTTTTGATTTTATAGTCGATTCCGGAAGTTGAGATGAAGCGAGAAGTATGAATTGCTGGGTTTGCTAAAATTA</canonical>
            <polymorphic>AGAATCATGTTTGATTTTTCAAGAAGGATATCCTGACGTTTCTCCAGATCCTTCAAAACTTGACGTTGTGATTTTTCAATGTATTCTGGAAGATATTCCTCCTCGATTTCGGGATTCTGTTTCCTTAATTTCTTCCGTTCTTTAGCAGCAGCTACGGCTTCAGAGAGCATCCATTGCTGAAACAAATGTCTTTATAAATATTTGTAAACACCGAAAAATACAGTAAACACTCTAATAGAATACCACACAAACCGTCCACTTTGATCTCAAATATCTCATTTCCTGTTGAAGTTTTAAAAAAGTGATTGGCTGGCAAAATGCTTATCATAACATCAACAACATTTTTTTAGTTGAATACTTTTTGATATCTTTCATAGAAAGACGATTTGAGAGTATTCTATTATAGGTTTATGGTGGTTCGATTGTTTTCTAGATTTTATATCAAAACCAATGTTATGATCCTAAATCTAATAAAGACATTTTTTCGAAAGATGTGTATYCGATGTTTGACCCCATTACCTCCGTAACTCTCAAATTGTTTTCAACTCTTCTGTAGTGTTGATATACAGCAACAGCAAGACACTTTTTTGCTGTCTCCTGTCCGACAACATACTTATTCAGATGTTCGACGATTTCTCTGAAATATCAAAGTCTCAAAGAATCGAATATCCATTTTAAATACTAACTTTGGATACAAAATGTGCATTTTTTCACTTCTTCCTCCATCTCTTCCAAATTTAGCCAATCCATTTGGTGGCTGATGGGTCAACGCGCTCTGAATAAGTGTTGCTCCAGAAATGAAGCCTTCTTCAATAACAAAAGGAAGAGAATCCGTTTTCTTGGAAATTTTCTTAGCATGAATTACTCTTCGATCAGATTTCCCTCTAAAACTGCGGATTTTCTAGGACCCCCTCAAACTCTGGTTACCTTTTGATTTTATAGTCGATTCCGGAAGTTGAGATGAAGCGAGAAGTATGAATTGCTGGGTTTGCTAAAATTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>316 207 126 104 74 66 56 36 15</canonical_bands>
                <polymorphic_bands>316 207 141 104 74 66 56 36</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTTCGATTGTTTTCTAGATTTT</pcr_primer_p1>
		<pcr_primer_p2>CGATTCTTTGAGACTTTGATATT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGTTCGATTGTTTTCTAGATTTTATATCAAAACCAATGTTATGATCCTAAATCTAATAAAGACATTTTTTCGAAAGATGTGTATTCGATGTTTGACCCCATTACCTCCGTAACTCTCAAATTGTTTTCAACTCTTCTGTAGTGTTGATATACAGCAACAGCAAGACACTTTTTTGCTGTCTCCTGTCCGACAACATACTTATTCAGATGTTCGACGATTTCTCTGAAATATCAAAGTCTCAAAGAATCG</canonical_amplicon>
		<polymorphic_amplicon>GGTTCGATTGTTTTCTAGATTTTATATCAAAACCAATGTTATGATCCTAAATCTAATAAAGACATTTTTTCGAAAGATGTGTATYCGATGTTTGACCCCATTACCTCCGTAACTCTCAAATTGTTTTCAACTCTTCTGTAGTGTTGATATACAGCAACAGCAAGACACTTTTTTGCTGTCTCCTGTCCGACAACATACTTATTCAGATGTTCGACGATTTCTCTGAAATATCAAAGTCTCAAAGAATCG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39524</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>251921</contig_pos>
        <strand>+</strand>
        <context>TACTCGGATT[G/T]TGGATTTTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAGAACAAATGAAATATATAGAAGAACATCGGGGATTTTGTACTCGGATT</left_flank>
        <right_flank>TGGATTTTTAAAAGGAAAAATGAACTAAAAAACGAATAAAAATTGTGGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGAAGAAAACGTTTTTTGTTCCCCTAGAAAAAGTTAATCTCTGAGTTGATCAAAACCTTCTTTCATTCCAAAATGTCTCTCTTCCGACTCCTTTTTTTTGTTGGAAACGAGTCAAAAGCCATTGAAATAGAACGTTCAATGACCATAAAAACCACCCTCTTCCTCTGCTTTCCTTAAGAATCTCAAAGTTTTCTGTCCACCGAAAAATTCGAATTTCCAGGTACTTCTCTCTCTAATTGAGTTGGGAAACGATTCCAGTGAATATCAGTATCTTAAAGTTGAATATGGAAAATAGCGAAAATAAAAAAAGAACGCACACTACAAAGTAAATGCTTGATGTTTGAACGGAATCTTTGAAGGAACTGAGTAAAAAAAGAAGATAAGAGGACACAGAAAATTTGGTTACTGGAAAAAAGAAGAAAAAATGACGAAGAAGAGAGAGGCGGTGCAGAACAAATGAAATATATAGAAGAACATCGGGGATTTTGTACTCGGATTTTGGATTTTTAAAAGGAAAAATGAACTAAAAAACGAATAAAAATTGTGGGTGTAATATTGTGTGGGTGGAGTCGACTACGGTAGTTTTGCTGAATCTCAAGCTACAACATTCGAAAGTTTAGGTCAAAACAAAGATTCCATAAATTATAAATTAAATTATGAGGGCAATTCTTAGCTAAAAATTGGTAACTTTGAAGAAAAATAATTTGTAGAAAACGTTTCCGGTTCTATAAAATTTTGAAAATATGAATGCCATATGAATTTCAAGAGCACTTGCCCAATATATCATTTTTCAGGTTTTATTATTAAGACCTAACAAAATGAGCAAAGTAAACAAGATAAATTACAACTGTATGTATATGGAAGACTTCTGCAAATTAAAAATAGGTTCCTCAGCTAATGAATAATTCTGTAAGATCCTCTCGTGACCATTTCAATATTCCCCAAAATTGTTGATTAAAAAATGTCAGTGACTCAAAAACAATTACGAATCCGGAGTTG</canonical>
            <polymorphic>CGGAAGAAAACGTTTTTTGTTCCCCTAGAAAAAGTTAATCTCTGAGTTGATCAAAACCTTCTTTCATTCCAAAATGTCTCTCTTCCGACTCCTTTTTTTTGTTGGAAACGAGTCAAAAGCCATTGAAATAGAACGTTCAATGACCATAAAAACCACCCTCTTCCTCTGCTTTCCTTAAGAATCTCAAAGTTTTCTGTCCACCGAAAAATTCGAATTTCCAGGTACTTCTCTCTCTAATTGAGTTGGGAAACGATTCCAGTGAATATCAGTATCTTAAAGTTGAATATGGAAAATAGCGAAAATAAAAAAAGAACGCACACTACAAAGTAAATGCTTGATGTTTGAACGGAATCTTTGAAGGAACTGAGTAAAAAAAGAAGATAAGAGGACACAGAAAATTTGGTTACTGGAAAAAAGAAGAAAAAATGACGAAGAAGAGAGAGGCGGTGCAGAACAAATGAAATATATAGAAGAACATCGGGGATTTTGTACTCGGATTKTGGATTTTTAAAAGGAAAAATGAACTAAAAAACGAATAAAAATTGTGGGTGTAATATTGTGTGGGTGGAGTCGACTACGGTAGTTTTGCTGAATCTCAAGCTACAACATTCGAAAGTTTAGGTCAAAACAAAGATTCCATAAATTATAAATTAAATTATGAGGGCAATTCTTAGCTAAAAATTGGTAACTTTGAAGAAAAATAATTTGTAGAAAACGTTTCCGGTTCTATAAAATTTTGAAAATATGAATGCCATATGAATTTCAAGAGCACTTGCCCAATATATCATTTTTCAGGTTTTATTATTAAGACCTAACAAAATGAGCAAAGTAAACAAGATAAATTACAACTGTATGTATATGGAAGACTTCTGCAAATTAAAAATAGGTTCCTCAGCTAATGAATAATTCTGTAAGATCCTCTCGTGACCATTTCAATATTCCCCAAAATTGTTGATTAAAAAATGTCAGTGACTCAAAAACAATTACGAATCCGGAGTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CACACTACAAAGTAAATGCTTGA</pcr_primer_p1>
		<pcr_primer_p2>ACACAATATTACACCCACAATTT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CACACTACAAAGTAAATGCTTGATGTTTGAACGGAATCTTTGAAGGAACTGAGTAAAAAAAGAAGATAAGAGGACACAGAAAATTTGGTTACTGGAAAAAAGAAGAAAAAATGACGAAGAAGAGAGAGGCGGTGCAGAACAAATGAAATATATAGAAGAACATCGGGGATTTTGTACTCGGATTTTGGATTTTTAAAAGGAAAAATGAACTAAAAAACGAATAAAAATTGTGGGTGTAATATTGTGT</canonical_amplicon>
		<polymorphic_amplicon>CACACTACAAAGTAAATGCTTGATGTTTGAACGGAATCTTTGAAGGAACTGAGTAAAAAAAGAAGATAAGAGGACACAGAAAATTTGGTTACTGGAAAAAAGAAGAAAAAATGACGAAGAAGAGAGAGGCGGTGCAGAACAAATGAAATATATAGAAGAACATCGGGGATTTTGTACTCGGATTKTGGATTTTTAAAAGGAAAAATGAACTAAAAAACGAATAAAAATTGTGGGTGTAATATTGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39525</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>260981</contig_pos>
        <strand>+</strand>
        <context>AATCACAAAA[C/T]CGACCTTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AACAGGATTTCCACAAAAATAATTTTAAAAAGTAACTCCAAATCACAAAA</left_flank>
        <right_flank>CGACCTTTTCTGAATACAATATTTCTGGAAAAATCTGATCTACCGTAATA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAACTTCGGAGTCTGAAGAAATATTGAAGAATTTTGTAAATTCATTCAAAATTTATGTGGAAGAGAAAGTTTGGTTCTCTCGATTTTTGCCAGTTTTCCGGCAATTTTTTAGATTCGAGAACAGTTTCATTTTCCGACTTGTCTGGAAGTTTTCAACACAAAAACTGTCGAATAGCAATACTAATCGAGAAAAAAAGGTCCCAAAATTTTAGGTTACTGTAGTTGTCGTTGTTCGCCCACGCCCACAAGCTTTTCTCTTCCACAGCTCAGATTTTTTATAAAAGCACATACGCAGAACTGTGATGATGTTAGCTGAACTGTTCGAGTAGAGCTATCAATATCTTACTAGATGGCGAGGAATGTCACAAGAGCACAATAAGGAATGTCACGGCGAGGAATGTCACAAGAGCACAATAATGTCACAAGAGCACGGTTTTAGATGAATCAAACAGGATTTCCACAAAAATAATTTTAAAAAGTAACTCCAAATCACAAAACCGACCTTTTCTGAATACAATATTTCTGGAAAAATCTGATCTACCGTAATAGAGGAGATTGGGAAACTGAAGTTTTAGAATGAATTTTGCACTTTAACCCAAGAACATGACACAAATTGGATTATGCTCCAATAAACTTTCCGAAAAATCCCATGGCCCAAAAGACCGAAAAACGGATTCAGTTTAAATATAACTTCCAACAAGATGTTCTGATGTCATAGACCATCCTCACAAAGATTCGAAAGCACACATTCAATAAAAGCAACTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGGGGGACGAAATCGTGCCGCGCTTATGTAGACCATCGGTCGTCAGACGCCTTCGCGCCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCTAATGGGGGTTCTCTATGCAAAATATCAGGAGAACTTTTTTTTGGTGTCTGGTCTCCTTTAATGAGCCTACCACTTACCATTTAAAGATGACGTTGACATAATT</canonical>
            <polymorphic>AAAAACTTCGGAGTCTGAAGAAATATTGAAGAATTTTGTAAATTCATTCAAAATTTATGTGGAAGAGAAAGTTTGGTTCTCTCGATTTTTGCCAGTTTTCCGGCAATTTTTTAGATTCGAGAACAGTTTCATTTTCCGACTTGTCTGGAAGTTTTCAACACAAAAACTGTCGAATAGCAATACTAATCGAGAAAAAAAGGTCCCAAAATTTTAGGTTACTGTAGTTGTCGTTGTTCGCCCACGCCCACAAGCTTTTCTCTTCCACAGCTCAGATTTTTTATAAAAGCACATACGCAGAACTGTGATGATGTTAGCTGAACTGTTCGAGTAGAGCTATCAATATCTTACTAGATGGCGAGGAATGTCACAAGAGCACAATAAGGAATGTCACGGCGAGGAATGTCACAAGAGCACAATAATGTCACAAGAGCACGGTTTTAGATGAATCAAACAGGATTTCCACAAAAATAATTTTAAAAAGTAACTCCAAATCACAAAAYCGACCTTTTCTGAATACAATATTTCTGGAAAAATCTGATCTACCGTAATAGAGGAGATTGGGAAACTGAAGTTTTAGAATGAATTTTGCACTTTAACCCAAGAACATGACACAAATTGGATTATGCTCCAATAAACTTTCCGAAAAATCCCATGGCCCAAAAGACCGAAAAACGGATTCAGTTTAAATATAACTTCCAACAAGATGTTCTGATGTCATAGACCATCCTCACAAAGATTCGAAAGCACACATTCAATAAAAGCAACTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGGGGGACGAAATCGTGCCGCGCTTATGTAGACCATCGGTCGTCAGACGCCTTCGCGCCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCTAATGGGGGTTCTCTATGCAAAATATCAGGAGAACTTTTTTTTGGTGTCTGGTCTCCTTTAATGAGCCTACCACTTACCATTTAAAGATGACGTTGACATAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAACTGTTCGAGTAGAGCTATCA</pcr_primer_p1>
		<pcr_primer_p2>AGTTTCCCAATCTCCTCTATTAC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>GAACTGTTCGAGTAGAGCTATCAATATCTTACTAGATGGCGAGGAATGTCACAAGAGCACAATAAGGAATGTCACGGCGAGGAATGTCACAAGAGCACAATAATGTCACAAGAGCACGGTTTTAGATGAATCAAACAGGATTTCCACAAAAATAATTTTAAAAAGTAACTCCAAATCACAAAACCGACCTTTTCTGAATACAATATTTCTGGAAAAATCTGATCTACCGTAATAGAGGAGATTGGGAAACT</canonical_amplicon>
		<polymorphic_amplicon>GAACTGTTCGAGTAGAGCTATCAATATCTTACTAGATGGCGAGGAATGTCACAAGAGCACAATAAGGAATGTCACGGCGAGGAATGTCACAAGAGCACAATAATGTCACAAGAGCACGGTTTTAGATGAATCAAACAGGATTTCCACAAAAATAATTTTAAAAAGTAACTCCAAATCACAAAAYCGACCTTTTCTGAATACAATATTTCTGGAAAAATCTGATCTACCGTAATAGAGGAGATTGGGAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39526</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>261008</contig_pos>
        <strand>+</strand>
        <context>CAATATTTCT[A/G]GAAAAATCTG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAGTAACTCCAAATCACAAAACCGACCTTTTCTGAATACAATATTTCT</left_flank>
        <right_flank>GAAAAATCTGATCTACCGTAATAGAGGAGATTGGGAAACTGAAGTTTTAG</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGAATTTTGTAAATTCATTCAAAATTTATGTGGAAGAGAAAGTTTGGTTCTCTCGATTTTTGCCAGTTTTCCGGCAATTTTTTAGATTCGAGAACAGTTTCATTTTCCGACTTGTCTGGAAGTTTTCAACACAAAAACTGTCGAATAGCAATACTAATCGAGAAAAAAAGGTCCCAAAATTTTAGGTTACTGTAGTTGTCGTTGTTCGCCCACGCCCACAAGCTTTTCTCTTCCACAGCTCAGATTTTTTATAAAAGCACATACGCAGAACTGTGATGATGTTAGCTGAACTGTTCGAGTAGAGCTATCAATATCTTACTAGATGGCGAGGAATGTCACAAGAGCACAATAAGGAATGTCACGGCGAGGAATGTCACAAGAGCACAATAATGTCACAAGAGCACGGTTTTAGATGAATCAAACAGGATTTCCACAAAAATAATTTTAAAAAGTAACTCCAAATCACAAAACCGACCTTTTCTGAATACAATATTTCTGGAAAAATCTGATCTACCGTAATAGAGGAGATTGGGAAACTGAAGTTTTAGAATGAATTTTGCACTTTAACCCAAGAACATGACACAAATTGGATTATGCTCCAATAAACTTTCCGAAAAATCCCATGGCCCAAAAGACCGAAAAACGGATTCAGTTTAAATATAACTTCCAACAAGATGTTCTGATGTCATAGACCATCCTCACAAAGATTCGAAAGCACACATTCAATAAAAGCAACTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGGGGGACGAAATCGTGCCGCGCTTATGTAGACCATCGGTCGTCAGACGCCTTCGCGCCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCTAATGGGGGTTCTCTATGCAAAATATCAGGAGAACTTTTTTTTGGTGTCTGGTCTCCTTTAATGAGCCTACCACTTACCATTTAAAGATGACGTTGACATAATTTCAAAAGAAAAGAGCAGAAGATGGAGA</canonical>
            <polymorphic>GAAGAATTTTGTAAATTCATTCAAAATTTATGTGGAAGAGAAAGTTTGGTTCTCTCGATTTTTGCCAGTTTTCCGGCAATTTTTTAGATTCGAGAACAGTTTCATTTTCCGACTTGTCTGGAAGTTTTCAACACAAAAACTGTCGAATAGCAATACTAATCGAGAAAAAAAGGTCCCAAAATTTTAGGTTACTGTAGTTGTCGTTGTTCGCCCACGCCCACAAGCTTTTCTCTTCCACAGCTCAGATTTTTTATAAAAGCACATACGCAGAACTGTGATGATGTTAGCTGAACTGTTCGAGTAGAGCTATCAATATCTTACTAGATGGCGAGGAATGTCACAAGAGCACAATAAGGAATGTCACGGCGAGGAATGTCACAAGAGCACAATAATGTCACAAGAGCACGGTTTTAGATGAATCAAACAGGATTTCCACAAAAATAATTTTAAAAAGTAACTCCAAATCACAAAACCGACCTTTTCTGAATACAATATTTCTRGAAAAATCTGATCTACCGTAATAGAGGAGATTGGGAAACTGAAGTTTTAGAATGAATTTTGCACTTTAACCCAAGAACATGACACAAATTGGATTATGCTCCAATAAACTTTCCGAAAAATCCCATGGCCCAAAAGACCGAAAAACGGATTCAGTTTAAATATAACTTCCAACAAGATGTTCTGATGTCATAGACCATCCTCACAAAGATTCGAAAGCACACATTCAATAAAAGCAACTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGGGGGACGAAATCGTGCCGCGCTTATGTAGACCATCGGTCGTCAGACGCCTTCGCGCCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCTAATGGGGGTTCTCTATGCAAAATATCAGGAGAACTTTTTTTTGGTGTCTGGTCTCCTTTAATGAGCCTACCACTTACCATTTAAAGATGACGTTGACATAATTTCAAAAGAAAAGAGCAGAAGATGGAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATCTTACTAGATGGCGAGGA</pcr_primer_p1>
		<pcr_primer_p2>GCAAAATTCATTCTAAAACTTCA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATCTTACTAGATGGCGAGGAATGTCACAAGAGCACAATAAGGAATGTCACGGCGAGGAATGTCACAAGAGCACAATAATGTCACAAGAGCACGGTTTTAGATGAATCAAACAGGATTTCCACAAAAATAATTTTAAAAAGTAACTCCAAATCACAAAACCGACCTTTTCTGAATACAATATTTCTGGAAAAATCTGATCTACCGTAATAGAGGAGATTGGGAAACTGAAGTTTTAGAATGAATTTTGC</canonical_amplicon>
		<polymorphic_amplicon>ATATCTTACTAGATGGCGAGGAATGTCACAAGAGCACAATAAGGAATGTCACGGCGAGGAATGTCACAAGAGCACAATAATGTCACAAGAGCACGGTTTTAGATGAATCAAACAGGATTTCCACAAAAATAATTTTAAAAAGTAACTCCAAATCACAAAACCGACCTTTTCTGAATACAATATTTCTRGAAAAATCTGATCTACCGTAATAGAGGAGATTGGGAAACTGAAGTTTTAGAATGAATTTTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39527</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>261413</contig_pos>
        <strand>+</strand>
        <context>TCAGGAGAAC[A/C]TTTTTTTGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCGGCGCTGTACCCCTAATGGGGGTTCTCTATGCAAAATATCAGGAGAAC</left_flank>
        <right_flank>TTTTTTTGGTGTCTGGTCTCCTTTAATGAGCCTACCACTTACCATTTAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGGTTTTAGATGAATCAAACAGGATTTCCACAAAAATAATTTTAAAAAGTAACTCCAAATCACAAAACCGACCTTTTCTGAATACAATATTTCTGGAAAAATCTGATCTACCGTAATAGAGGAGATTGGGAAACTGAAGTTTTAGAATGAATTTTGCACTTTAACCCAAGAACATGACACAAATTGGATTATGCTCCAATAAACTTTCCGAAAAATCCCATGGCCCAAAAGACCGAAAAACGGATTCAGTTTAAATATAACTTCCAACAAGATGTTCTGATGTCATAGACCATCCTCACAAAGATTCGAAAGCACACATTCAATAAAAGCAACTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGGGGGACGAAATCGTGCCGCGCTTATGTAGACCATCGGTCGTCAGACGCCTTCGCGCCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCTAATGGGGGTTCTCTATGCAAAATATCAGGAGAACTTTTTTTTGGTGTCTGGTCTCCTTTAATGAGCCTACCACTTACCATTTAAAGATGACGTTGACATAATTTCAAAAGAAAAGAGCAGAAGATGGAGAAAATAGACACGGAAATCTAGTCAACCTCACCAAAAGCACTGGTTTACGAGTGCTATAAAAGTATCCCAGAAAGCGACACTTTTTTTGAGTGTCGGCTTTTTATTCGAACGAAAAGACAAAAGTACATAAAAGCATGAAAAAAGGTTCCGGTTAAATTTAGGTCAAGTTGTGAAAATGTGTGCTTCGGAACGAAAAGTGGTGTGCTTTCACAAGTTTGAATTTTTCTATTATTCGGCCAAAATAAATCCTGAATTATAGTTTTTTCCGGATTTCGTGAAGAGTTCCAATATAGTTTCTCCTTTCAAAAGACCTTGCTTTGTCTCTTTCAAAACTACCCCCTTCTGAAAAAAAAAAACATACCACCCAGATTGTTCCACTTCATTGTCTGCTGAACGACGGAACTGA</canonical>
            <polymorphic>CGGTTTTAGATGAATCAAACAGGATTTCCACAAAAATAATTTTAAAAAGTAACTCCAAATCACAAAACCGACCTTTTCTGAATACAATATTTCTGGAAAAATCTGATCTACCGTAATAGAGGAGATTGGGAAACTGAAGTTTTAGAATGAATTTTGCACTTTAACCCAAGAACATGACACAAATTGGATTATGCTCCAATAAACTTTCCGAAAAATCCCATGGCCCAAAAGACCGAAAAACGGATTCAGTTTAAATATAACTTCCAACAAGATGTTCTGATGTCATAGACCATCCTCACAAAGATTCGAAAGCACACATTCAATAAAAGCAACTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGGGGGACGAAATCGTGCCGCGCTTATGTAGACCATCGGTCGTCAGACGCCTTCGCGCCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCTAATGGGGGTTCTCTATGCAAAATATCAGGAGAACMTTTTTTTGGTGTCTGGTCTCCTTTAATGAGCCTACCACTTACCATTTAAAGATGACGTTGACATAATTTCAAAAGAAAAGAGCAGAAGATGGAGAAAATAGACACGGAAATCTAGTCAACCTCACCAAAAGCACTGGTTTACGAGTGCTATAAAAGTATCCCAGAAAGCGACACTTTTTTTGAGTGTCGGCTTTTTATTCGAACGAAAAGACAAAAGTACATAAAAGCATGAAAAAAGGTTCCGGTTAAATTTAGGTCAAGTTGTGAAAATGTGTGCTTCGGAACGAAAAGTGGTGTGCTTTCACAAGTTTGAATTTTTCTATTATTCGGCCAAAATAAATCCTGAATTATAGTTTTTTCCGGATTTCGTGAAGAGTTCCAATATAGTTTCTCCTTTCAAAAGACCTTGCTTTGTCTCTTTCAAAACTACCCCCTTCTGAAAAAAAAAAACATACCACCCAGATTGTTCCACTTCATTGTCTGCTGAACGACGGAACTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAATAAAAGCAACTTAAAGGAG</pcr_primer_p1>
		<pcr_primer_p2>GAAATTATGTCAACGTCATCTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TCAATAAAAGCAACTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGGGGGACGAAATCGTGCCGCGCTTATGTAGACCATCGGTCGTCAGACGCCTTCGCGCCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCTAATGGGGGTTCTCTATGCAAAATATCAGGAGAACTTTTTTTTGGTGTCTGGTCTCCTTTAATGAGCCTACCACTTACCATTTAAAGATGACGTTGACATAATTTC</canonical_amplicon>
		<polymorphic_amplicon>TCAATAAAAGCAACTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGGGGGACGAAATCGTGCCGCGCTTATGTAGACCATCGGTCGTCAGACGCCTTCGCGCCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCTAATGGGGGTTCTCTATGCAAAATATCAGGAGAACMTTTTTTTGGTGTCTGGTCTCCTTTAATGAGCCTACCACTTACCATTTAAAGATGACGTTGACATAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39528</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>261430</contig_pos>
        <strand></strand>
        <context>TGGTGTCTGG[T/C]CTCCTTTAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATGGGGGTTCTCTATGCAAAATATCAGGAGAACTTTTTTTTGGTGTCTGG</left_flank>
        <right_flank>CTCCTTTAATGAGCCTACCACTTACCATTTAAAGATGACGTTGACATAAT</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAGGATTTCCACAAAAATAATTTTAAAAAGTAACTCCAAATCACAAAACCGACCTTTTCTGAATACAATATTTCTGGAAAAATCTGATCTACCGTAATAGAGGAGATTGGGAAACTGAAGTTTTAGAATGAATTTTGCACTTTAACCCAAGAACATGACACAAATTGGATTATGCTCCAATAAACTTTCCGAAAAATCCCATGGCCCAAAAGACCGAAAAACGGATTCAGTTTAAATATAACTTCCAACAAGATGTTCTGATGTCATAGACCATCCTCACAAAGATTCGAAAGCACACATTCAATAAAAGCAACTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGGGGGACGAAATCGTGCCGCGCTTATGTAGACCATCGGTCGTCAGACGCCTTCGCGCCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCTAATGGGGGTTCTCTATGCAAAATATCAGGAGAACTTTTTTTTGGTGTCTGGTCTCCTTTAATGAGCCTACCACTTACCATTTAAAGATGACGTTGACATAATTTCAAAAGAAAAGAGCAGAAGATGGAGAAAATAGACACGGAAATCTAGTCAACCTCACCAAAAGCACTGGTTTACGAGTGCTATAAAAGTATCCCAGAAAGCGACACTTTTTTTGAGTGTCGGCTTTTTATTCGAACGAAAAGACAAAAGTACATAAAAGCATGAAAAAAGGTTCCGGTTAAATTTAGGTCAAGTTGTGAAAATGTGTGCTTCGGAACGAAAAGTGGTGTGCTTTCACAAGTTTGAATTTTTCTATTATTCGGCCAAAATAAATCCTGAATTATAGTTTTTTCCGGATTTCGTGAAGAGTTCCAATATAGTTTCTCCTTTCAAAAGACCTTGCTTTGTCTCTTTCAAAACTACCCCCTTCTGAAAAAAAAAAACATACCACCCAGATTGTTCCACTTCATTGTCTGCTGAACGACGGAACTGAATGAGATCTTTGGAGAT</canonical>
            <polymorphic>AACAGGATTTCCACAAAAATAATTTTAAAAAGTAACTCCAAATCACAAAACCGACCTTTTCTGAATACAATATTTCTGGAAAAATCTGATCTACCGTAATAGAGGAGATTGGGAAACTGAAGTTTTAGAATGAATTTTGCACTTTAACCCAAGAACATGACACAAATTGGATTATGCTCCAATAAACTTTCCGAAAAATCCCATGGCCCAAAAGACCGAAAAACGGATTCAGTTTAAATATAACTTCCAACAAGATGTTCTGATGTCATAGACCATCCTCACAAAGATTCGAAAGCACACATTCAATAAAAGCAACTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGGGGGACGAAATCGTGCCGCGCTTATGTAGACCATCGGTCGTCAGACGCCTTCGCGCCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCTAATGGGGGTTCTCTATGCAAAATATCAGGAGAACTTTTTTTTGGTGTCTGGYCTCCTTTAATGAGCCTACCACTTACCATTTAAAGATGACGTTGACATAATTTCAAAAGAAAAGAGCAGAAGATGGAGAAAATAGACACGGAAATCTAGTCAACCTCACCAAAAGCACTGGTTTACGAGTGCTATAAAAGTATCCCAGAAAGCGACACTTTTTTTGAGTGTCGGCTTTTTATTCGAACGAAAAGACAAAAGTACATAAAAGCATGAAAAAAGGTTCCGGTTAAATTTAGGTCAAGTTGTGAAAATGTGTGCTTCGGAACGAAAAGTGGTGTGCTTTCACAAGTTTGAATTTTTCTATTATTCGGCCAAAATAAATCCTGAATTATAGTTTTTTCCGGATTTCGTGAAGAGTTCCAATATAGTTTCTCCTTTCAAAAGACCTTGCTTTGTCTCTTTCAAAACTACCCCCTTCTGAAAAAAAAAAACATACCACCCAGATTGTTCCACTTCATTGTCTGCTGAACGACGGAACTGAATGAGATCTTTGGAGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTAAAGGAGGCGAGACAG</pcr_primer_p1>
		<pcr_primer_p2>TGCTCTTTTCTTTTGAAATTATG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ACTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGGGGGACGAAATCGTGCCGCGCTTATGTAGACCATCGGTCGTCAGACGCCTTCGCGCCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCTAATGGGGGTTCTCTATGCAAAATATCAGGAGAACTTTTTTTTGGTGTCTGGTCTCCTTTAATGAGCCTACCACTTACCATTTAAAGATGACGTTGACATAATTTCAAAAGAAAAGAGCA</canonical_amplicon>
		<polymorphic_amplicon>ACTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGGGGGACGAAATCGTGCCGCGCTTATGTAGACCATCGGTCGTCAGACGCCTTCGCGCCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCTAATGGGGGTTCTCTATGCAAAATATCAGGAGAACTTTTTTTTGGTGTCTGGYCTCCTTTAATGAGCCTACCACTTACCATTTAAAGATGACGTTGACATAATTTCAAAAGAAAAGAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39529</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>261457</contig_pos>
        <strand></strand>
        <context>ACCACTTACC[A/C]TTTAAAGATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GAGAACTTTTTTTTGGTGTCTGGTCTCCTTTAATGAGCCTACCACTTACC</left_flank>
        <right_flank>TTTAAAGATGACGTTGACATAATTTCAAAAGAAAAGAGCAGAAGATGGAG</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGTAACTCCAAATCACAAAACCGACCTTTTCTGAATACAATATTTCTGGAAAAATCTGATCTACCGTAATAGAGGAGATTGGGAAACTGAAGTTTTAGAATGAATTTTGCACTTTAACCCAAGAACATGACACAAATTGGATTATGCTCCAATAAACTTTCCGAAAAATCCCATGGCCCAAAAGACCGAAAAACGGATTCAGTTTAAATATAACTTCCAACAAGATGTTCTGATGTCATAGACCATCCTCACAAAGATTCGAAAGCACACATTCAATAAAAGCAACTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGGGGGACGAAATCGTGCCGCGCTTATGTAGACCATCGGTCGTCAGACGCCTTCGCGCCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCTAATGGGGGTTCTCTATGCAAAATATCAGGAGAACTTTTTTTTGGTGTCTGGTCTCCTTTAATGAGCCTACCACTTACCATTTAAAGATGACGTTGACATAATTTCAAAAGAAAAGAGCAGAAGATGGAGAAAATAGACACGGAAATCTAGTCAACCTCACCAAAAGCACTGGTTTACGAGTGCTATAAAAGTATCCCAGAAAGCGACACTTTTTTTGAGTGTCGGCTTTTTATTCGAACGAAAAGACAAAAGTACATAAAAGCATGAAAAAAGGTTCCGGTTAAATTTAGGTCAAGTTGTGAAAATGTGTGCTTCGGAACGAAAAGTGGTGTGCTTTCACAAGTTTGAATTTTTCTATTATTCGGCCAAAATAAATCCTGAATTATAGTTTTTTCCGGATTTCGTGAAGAGTTCCAATATAGTTTCTCCTTTCAAAAGACCTTGCTTTGTCTCTTTCAAAACTACCCCCTTCTGAAAAAAAAAAACATACCACCCAGATTGTTCCACTTCATTGTCTGCTGAACGACGGAACTGAATGAGATCTTTGGAGATGCGTGTAGTCGACCGGACGAAGAGCAT</canonical>
            <polymorphic>AAAAGTAACTCCAAATCACAAAACCGACCTTTTCTGAATACAATATTTCTGGAAAAATCTGATCTACCGTAATAGAGGAGATTGGGAAACTGAAGTTTTAGAATGAATTTTGCACTTTAACCCAAGAACATGACACAAATTGGATTATGCTCCAATAAACTTTCCGAAAAATCCCATGGCCCAAAAGACCGAAAAACGGATTCAGTTTAAATATAACTTCCAACAAGATGTTCTGATGTCATAGACCATCCTCACAAAGATTCGAAAGCACACATTCAATAAAAGCAACTTAAAGGAGGCGAGACAGCAAAAATTTCGGGGGACAGTTCGGGGGACGAAATCGTGCCGCGCTTATGTAGACCATCGGTCGTCAGACGCCTTCGCGCCCCCGTAGCTCAGCCGGTAGCGGCGCTGTACCCCTAATGGGGGTTCTCTATGCAAAATATCAGGAGAACTTTTTTTTGGTGTCTGGTCTCCTTTAATGAGCCTACCACTTACCMTTTAAAGATGACGTTGACATAATTTCAAAAGAAAAGAGCAGAAGATGGAGAAAATAGACACGGAAATCTAGTCAACCTCACCAAAAGCACTGGTTTACGAGTGCTATAAAAGTATCCCAGAAAGCGACACTTTTTTTGAGTGTCGGCTTTTTATTCGAACGAAAAGACAAAAGTACATAAAAGCATGAAAAAAGGTTCCGGTTAAATTTAGGTCAAGTTGTGAAAATGTGTGCTTCGGAACGAAAAGTGGTGTGCTTTCACAAGTTTGAATTTTTCTATTATTCGGCCAAAATAAATCCTGAATTATAGTTTTTTCCGGATTTCGTGAAGAGTTCCAATATAGTTTCTCCTTTCAAAAGACCTTGCTTTGTCTCTTTCAAAACTACCCCCTTCTGAAAAAAAAAAACATACCACCCAGATTGTTCCACTTCATTGTCTGCTGAACGACGGAACTGAATGAGATCTTTGGAGATGCGTGTAGTCGACCGGACGAAGAGCAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATGCAAAATATCAGGAGAAC</pcr_primer_p1>
		<pcr_primer_p2>CATGCTTTTATGTACTTTTGTCTT</pcr_primer_p2>
		<pcr_amplicon_size>255</pcr_amplicon_size>
		<canonical_amplicon>TCTATGCAAAATATCAGGAGAACTTTTTTTTGGTGTCTGGTCTCCTTTAATGAGCCTACCACTTACCATTTAAAGATGACGTTGACATAATTTCAAAAGAAAAGAGCAGAAGATGGAGAAAATAGACACGGAAATCTAGTCAACCTCACCAAAAGCACTGGTTTACGAGTGCTATAAAAGTATCCCAGAAAGCGACACTTTTTTTGAGTGTCGGCTTTTTATTCGAACGAAAAGACAAAAGTACATAAAAGCATG</canonical_amplicon>
		<polymorphic_amplicon>TCTATGCAAAATATCAGGAGAACTTTTTTTTGGTGTCTGGTCTCCTTTAATGAGCCTACCACTTACCMTTTAAAGATGACGTTGACATAATTTCAAAAGAAAAGAGCAGAAGATGGAGAAAATAGACACGGAAATCTAGTCAACCTCACCAAAAGCACTGGTTTACGAGTGCTATAAAAGTATCCCAGAAAGCGACACTTTTTTTGAGTGTCGGCTTTTTATTCGAACGAAAAGACAAAAGTACATAAAAGCATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39530</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>262745</contig_pos>
        <strand>+</strand>
        <context>CACCATTGGA[A/G]CTTTCATCCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAGTAATCTGCTGGTAATAAGCTAGACGTCCGTTACTGTCACCATTGGA</left_flank>
        <right_flank>CTTTCATCCAATTTTTAAAAACAAGTACCTGAACTTGGAGTGACGTAGAT</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAATTTTATCAATTTTGATTTCTAAAAAAGTATTGCATAAATTGTCTACTGATACGAAGTGTTAAAATTACAATATTTCATAAAAAGAGGCTCATTTTTGAAATGCACCATTTTTCTGCCAAATTCCATTCTGATGATATGCTTTGAAAGGAGAGTTGTGACACTTCAAAATCGCTCATCTCATTTTGTTGGATTTTTACAACAAAGTTGTCAACTAAAAAACTGGAACAATTTTGCTTACAATAATCTGAAAATTTCAGACAAATTGAGAAAAAAGTGGGAATCGTTTTTCAGGATGTCAAAGTTTTCGGCCAAACAAGTCAAAATATTCTGCCCGGTACTGTATGTTTTATTCTGGTACAAAAATCGGAGCTGTGGAAGAGAAACGCCGGTGATCGTGATCGAAGGCTCCACAACGTCAACTATAGTAACCTAAAAATAATTGTATGATAGTAATCTGCTGGTAATAAGCTAGACGTCCGTTACTGTCACCATTGGAACTTTCATCCAATTTTTAAAAACAAGTACCTGAACTTGGAGTGACGTAGATTTGCATAGACATTCAATATCGAGAATCTAGAAGAAGATTCAATACTCAAATTGAAAAAAAAATCAAAACGGAAAGAGTGGGAAGAACAATTGAATTCCAGTTTTACGAGAAAGAATCGACTTGTTGCAAGAAGATATAACTCAGAACATGAACGAAAATTCAGTTAGGAAAAATGTGAGAATCAGGTCGGAAATAGGATTTCAGTCTTGGATTTCCAGTTCATTTTTTTTGATAAGCCCCTCCTCACAAGCTAATTTTTTGGATATACTCTATGACTAAAAATGTATTTTTTAATAAATAGTAGTAGTGACTGAAAAATGGCTTCTTCGTTTTTTTTTTCATTTTGTGATTATAGATTGGAATCTAATGTTCCACATGACGTGGTCCAGAAGACATTTGTATTATGAAACCTAAAAAAACAGACAGAGTACAAAAAGTCTCTAGTGGACA</canonical>
            <polymorphic>TAATTTTATCAATTTTGATTTCTAAAAAAGTATTGCATAAATTGTCTACTGATACGAAGTGTTAAAATTACAATATTTCATAAAAAGAGGCTCATTTTTGAAATGCACCATTTTTCTGCCAAATTCCATTCTGATGATATGCTTTGAAAGGAGAGTTGTGACACTTCAAAATCGCTCATCTCATTTTGTTGGATTTTTACAACAAAGTTGTCAACTAAAAAACTGGAACAATTTTGCTTACAATAATCTGAAAATTTCAGACAAATTGAGAAAAAAGTGGGAATCGTTTTTCAGGATGTCAAAGTTTTCGGCCAAACAAGTCAAAATATTCTGCCCGGTACTGTATGTTTTATTCTGGTACAAAAATCGGAGCTGTGGAAGAGAAACGCCGGTGATCGTGATCGAAGGCTCCACAACGTCAACTATAGTAACCTAAAAATAATTGTATGATAGTAATCTGCTGGTAATAAGCTAGACGTCCGTTACTGTCACCATTGGARCTTTCATCCAATTTTTAAAAACAAGTACCTGAACTTGGAGTGACGTAGATTTGCATAGACATTCAATATCGAGAATCTAGAAGAAGATTCAATACTCAAATTGAAAAAAAAATCAAAACGGAAAGAGTGGGAAGAACAATTGAATTCCAGTTTTACGAGAAAGAATCGACTTGTTGCAAGAAGATATAACTCAGAACATGAACGAAAATTCAGTTAGGAAAAATGTGAGAATCAGGTCGGAAATAGGATTTCAGTCTTGGATTTCCAGTTCATTTTTTTTGATAAGCCCCTCCTCACAAGCTAATTTTTTGGATATACTCTATGACTAAAAATGTATTTTTTAATAAATAGTAGTAGTGACTGAAAAATGGCTTCTTCGTTTTTTTTTTCATTTTGTGATTATAGATTGGAATCTAATGTTCCACATGACGTGGTCCAGAAGACATTTGTATTATGAAACCTAAAAAAACAGACAGAGTACAAAAAGTCTCTAGTGGACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATATTCTGCCCGGTACTGTAT</pcr_primer_p1>
		<pcr_primer_p2>TTCTCGATATTGAATGTCTATGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATATTCTGCCCGGTACTGTATGTTTTATTCTGGTACAAAAATCGGAGCTGTGGAAGAGAAACGCCGGTGATCGTGATCGAAGGCTCCACAACGTCAACTATAGTAACCTAAAAATAATTGTATGATAGTAATCTGCTGGTAATAAGCTAGACGTCCGTTACTGTCACCATTGGAACTTTCATCCAATTTTTAAAAACAAGTACCTGAACTTGGAGTGACGTAGATTTGCATAGACATTCAATATCGAGAA</canonical_amplicon>
		<polymorphic_amplicon>ATATTCTGCCCGGTACTGTATGTTTTATTCTGGTACAAAAATCGGAGCTGTGGAAGAGAAACGCCGGTGATCGTGATCGAAGGCTCCACAACGTCAACTATAGTAACCTAAAAATAATTGTATGATAGTAATCTGCTGGTAATAAGCTAGACGTCCGTTACTGTCACCATTGGARCTTTCATCCAATTTTTAAAAACAAGTACCTGAACTTGGAGTGACGTAGATTTGCATAGACATTCAATATCGAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39531</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>263018</contig_pos>
        <strand>+</strand>
        <context>TTCCAGTTCA[G/T]TTTTTTTGAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATGTGAGAATCAGGTCGGAAATAGGATTTCAGTCTTGGATTTCCAGTTCA</left_flank>
        <right_flank>TTTTTTTGATAAGCCCCTCCTCACAAGCTAATTTTTTGGATATACTCTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGTGGGAATCGTTTTTCAGGATGTCAAAGTTTTCGGCCAAACAAGTCAAAATATTCTGCCCGGTACTGTATGTTTTATTCTGGTACAAAAATCGGAGCTGTGGAAGAGAAACGCCGGTGATCGTGATCGAAGGCTCCACAACGTCAACTATAGTAACCTAAAAATAATTGTATGATAGTAATCTGCTGGTAATAAGCTAGACGTCCGTTACTGTCACCATTGGAACTTTCATCCAATTTTTAAAAACAAGTACCTGAACTTGGAGTGACGTAGATTTGCATAGACATTCAATATCGAGAATCTAGAAGAAGATTCAATACTCAAATTGAAAAAAAAATCAAAACGGAAAGAGTGGGAAGAACAATTGAATTCCAGTTTTACGAGAAAGAATCGACTTGTTGCAAGAAGATATAACTCAGAACATGAACGAAAATTCAGTTAGGAAAAATGTGAGAATCAGGTCGGAAATAGGATTTCAGTCTTGGATTTCCAGTTCATTTTTTTTGATAAGCCCCTCCTCACAAGCTAATTTTTTGGATATACTCTATGACTAAAAATGTATTTTTTAATAAATAGTAGTAGTGACTGAAAAATGGCTTCTTCGTTTTTTTTTTCATTTTGTGATTATAGATTGGAATCTAATGTTCCACATGACGTGGTCCAGAAGACATTTGTATTATGAAACCTAAAAAAACAGACAGAGTACAAAAAGTCTCTAGTGGACAGAAGTGGTTCTGTCTAGCCACGATTCTTGTATTCTGAAGTTTTGGGAAAAGAAGACGTTTACAAAACCGAACAACGTGCATAAGAAAAATAAAATTGTGAAATAAAGTAAACATTGAGCTGGAACGAAGCAGTTCAAATCTGTTGATGTGTTCTAAGCTAAAATAAGATCTAATCGGGGGTAAGGAAACAACGAGATCAAAGATTAATTTACTTTTTGCTGACTAGGATTTACTTTTTCTTTTGAGAACTAGTTTAGAAGATTTTTTCGTTTT</canonical>
            <polymorphic>AAAGTGGGAATCGTTTTTCAGGATGTCAAAGTTTTCGGCCAAACAAGTCAAAATATTCTGCCCGGTACTGTATGTTTTATTCTGGTACAAAAATCGGAGCTGTGGAAGAGAAACGCCGGTGATCGTGATCGAAGGCTCCACAACGTCAACTATAGTAACCTAAAAATAATTGTATGATAGTAATCTGCTGGTAATAAGCTAGACGTCCGTTACTGTCACCATTGGAACTTTCATCCAATTTTTAAAAACAAGTACCTGAACTTGGAGTGACGTAGATTTGCATAGACATTCAATATCGAGAATCTAGAAGAAGATTCAATACTCAAATTGAAAAAAAAATCAAAACGGAAAGAGTGGGAAGAACAATTGAATTCCAGTTTTACGAGAAAGAATCGACTTGTTGCAAGAAGATATAACTCAGAACATGAACGAAAATTCAGTTAGGAAAAATGTGAGAATCAGGTCGGAAATAGGATTTCAGTCTTGGATTTCCAGTTCAKTTTTTTTGATAAGCCCCTCCTCACAAGCTAATTTTTTGGATATACTCTATGACTAAAAATGTATTTTTTAATAAATAGTAGTAGTGACTGAAAAATGGCTTCTTCGTTTTTTTTTTCATTTTGTGATTATAGATTGGAATCTAATGTTCCACATGACGTGGTCCAGAAGACATTTGTATTATGAAACCTAAAAAAACAGACAGAGTACAAAAAGTCTCTAGTGGACAGAAGTGGTTCTGTCTAGCCACGATTCTTGTATTCTGAAGTTTTGGGAAAAGAAGACGTTTACAAAACCGAACAACGTGCATAAGAAAAATAAAATTGTGAAATAAAGTAAACATTGAGCTGGAACGAAGCAGTTCAAATCTGTTGATGTGTTCTAAGCTAAAATAAGATCTAATCGGGGGTAAGGAAACAACGAGATCAAAGATTAATTTACTTTTTGCTGACTAGGATTTACTTTTTCTTTTGAGAACTAGTTTAGAAGATTTTTTCGTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCAGTTAGGAAAAATGTGAGA</pcr_primer_p1>
		<pcr_primer_p2>TCATAATACAAATGTCTTCTGGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCAGTTAGGAAAAATGTGAGAATCAGGTCGGAAATAGGATTTCAGTCTTGGATTTCCAGTTCATTTTTTTTGATAAGCCCCTCCTCACAAGCTAATTTTTTGGATATACTCTATGACTAAAAATGTATTTTTTAATAAATAGTAGTAGTGACTGAAAAATGGCTTCTTCGTTTTTTTTTTCATTTTGTGATTATAGATTGGAATCTAATGTTCCACATGACGTGGTCCAGAAGACATTTGTATTATGA</canonical_amplicon>
		<polymorphic_amplicon>ATTCAGTTAGGAAAAATGTGAGAATCAGGTCGGAAATAGGATTTCAGTCTTGGATTTCCAGTTCAKTTTTTTTGATAAGCCCCTCCTCACAAGCTAATTTTTTGGATATACTCTATGACTAAAAATGTATTTTTTAATAAATAGTAGTAGTGACTGAAAAATGGCTTCTTCGTTTTTTTTTTCATTTTGTGATTATAGATTGGAATCTAATGTTCCACATGACGTGGTCCAGAAGACATTTGTATTATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39532</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>263059</contig_pos>
        <strand></strand>
        <context>ATTTTTTGGA[T/G]ATACTCTATG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TCCAGTTCATTTTTTTTGATAAGCCCCTCCTCACAAGCTAATTTTTTGGA</left_flank>
        <right_flank>ATACTCTATGACTAAAAATGTATTTTTTAATAAATAGTAGTAGTGACTGA</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAAGTCAAAATATTCTGCCCGGTACTGTATGTTTTATTCTGGTACAAAAATCGGAGCTGTGGAAGAGAAACGCCGGTGATCGTGATCGAAGGCTCCACAACGTCAACTATAGTAACCTAAAAATAATTGTATGATAGTAATCTGCTGGTAATAAGCTAGACGTCCGTTACTGTCACCATTGGAACTTTCATCCAATTTTTAAAAACAAGTACCTGAACTTGGAGTGACGTAGATTTGCATAGACATTCAATATCGAGAATCTAGAAGAAGATTCAATACTCAAATTGAAAAAAAAATCAAAACGGAAAGAGTGGGAAGAACAATTGAATTCCAGTTTTACGAGAAAGAATCGACTTGTTGCAAGAAGATATAACTCAGAACATGAACGAAAATTCAGTTAGGAAAAATGTGAGAATCAGGTCGGAAATAGGATTTCAGTCTTGGATTTCCAGTTCATTTTTTTTGATAAGCCCCTCCTCACAAGCTAATTTTTTGGATATACTCTATGACTAAAAATGTATTTTTTAATAAATAGTAGTAGTGACTGAAAAATGGCTTCTTCGTTTTTTTTTTCATTTTGTGATTATAGATTGGAATCTAATGTTCCACATGACGTGGTCCAGAAGACATTTGTATTATGAAACCTAAAAAAACAGACAGAGTACAAAAAGTCTCTAGTGGACAGAAGTGGTTCTGTCTAGCCACGATTCTTGTATTCTGAAGTTTTGGGAAAAGAAGACGTTTACAAAACCGAACAACGTGCATAAGAAAAATAAAATTGTGAAATAAAGTAAACATTGAGCTGGAACGAAGCAGTTCAAATCTGTTGATGTGTTCTAAGCTAAAATAAGATCTAATCGGGGGTAAGGAAACAACGAGATCAAAGATTAATTTACTTTTTGCTGACTAGGATTTACTTTTTCTTTTGAGAACTAGTTTAGAAGATTTTTTCGTTTTGGGGAAGATAAAGTTACAAAGATACCGGAAATATTCTAATT</canonical>
            <polymorphic>AACAAGTCAAAATATTCTGCCCGGTACTGTATGTTTTATTCTGGTACAAAAATCGGAGCTGTGGAAGAGAAACGCCGGTGATCGTGATCGAAGGCTCCACAACGTCAACTATAGTAACCTAAAAATAATTGTATGATAGTAATCTGCTGGTAATAAGCTAGACGTCCGTTACTGTCACCATTGGAACTTTCATCCAATTTTTAAAAACAAGTACCTGAACTTGGAGTGACGTAGATTTGCATAGACATTCAATATCGAGAATCTAGAAGAAGATTCAATACTCAAATTGAAAAAAAAATCAAAACGGAAAGAGTGGGAAGAACAATTGAATTCCAGTTTTACGAGAAAGAATCGACTTGTTGCAAGAAGATATAACTCAGAACATGAACGAAAATTCAGTTAGGAAAAATGTGAGAATCAGGTCGGAAATAGGATTTCAGTCTTGGATTTCCAGTTCATTTTTTTTGATAAGCCCCTCCTCACAAGCTAATTTTTTGGAKATACTCTATGACTAAAAATGTATTTTTTAATAAATAGTAGTAGTGACTGAAAAATGGCTTCTTCGTTTTTTTTTTCATTTTGTGATTATAGATTGGAATCTAATGTTCCACATGACGTGGTCCAGAAGACATTTGTATTATGAAACCTAAAAAAACAGACAGAGTACAAAAAGTCTCTAGTGGACAGAAGTGGTTCTGTCTAGCCACGATTCTTGTATTCTGAAGTTTTGGGAAAAGAAGACGTTTACAAAACCGAACAACGTGCATAAGAAAAATAAAATTGTGAAATAAAGTAAACATTGAGCTGGAACGAAGCAGTTCAAATCTGTTGATGTGTTCTAAGCTAAAATAAGATCTAATCGGGGGTAAGGAAACAACGAGATCAAAGATTAATTTACTTTTTGCTGACTAGGATTTACTTTTTCTTTTGAGAACTAGTTTAGAAGATTTTTTCGTTTTGGGGAAGATAAAGTTACAAAGATACCGGAAATATTCTAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCAGTTAGGAAAAATGTGAGA</pcr_primer_p1>
		<pcr_primer_p2>TCATAATACAAATGTCTTCTGGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTCAGTTAGGAAAAATGTGAGAATCAGGTCGGAAATAGGATTTCAGTCTTGGATTTCCAGTTCATTTTTTTTGATAAGCCCCTCCTCACAAGCTAATTTTTTGGATATACTCTATGACTAAAAATGTATTTTTTAATAAATAGTAGTAGTGACTGAAAAATGGCTTCTTCGTTTTTTTTTTCATTTTGTGATTATAGATTGGAATCTAATGTTCCACATGACGTGGTCCAGAAGACATTTGTATTATGA</canonical_amplicon>
		<polymorphic_amplicon>ATTCAGTTAGGAAAAATGTGAGAATCAGGTCGGAAATAGGATTTCAGTCTTGGATTTCCAGTTCATTTTTTTTGATAAGCCCCTCCTCACAAGCTAATTTTTTGGAKATACTCTATGACTAAAAATGTATTTTTTAATAAATAGTAGTAGTGACTGAAAAATGGCTTCTTCGTTTTTTTTTTCATTTTGTGATTATAGATTGGAATCTAATGTTCCACATGACGTGGTCCAGAAGACATTTGTATTATGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39533</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>263288</contig_pos>
        <strand>+</strand>
        <context>TCTGAAGTTT[C/T]GGGAAAAGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTGGACAGAAGTGGTTCTGTCTAGCCACGATTCTTGTATTCTGAAGTTT</left_flank>
        <right_flank>GGGAAAAGAAGACGTTTACAAAACCGAACAACGTGCATAAGAAAAATAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTAGATTTGCATAGACATTCAATATCGAGAATCTAGAAGAAGATTCAATACTCAAATTGAAAAAAAAATCAAAACGGAAAGAGTGGGAAGAACAATTGAATTCCAGTTTTACGAGAAAGAATCGACTTGTTGCAAGAAGATATAACTCAGAACATGAACGAAAATTCAGTTAGGAAAAATGTGAGAATCAGGTCGGAAATAGGATTTCAGTCTTGGATTTCCAGTTCATTTTTTTTGATAAGCCCCTCCTCACAAGCTAATTTTTTGGATATACTCTATGACTAAAAATGTATTTTTTAATAAATAGTAGTAGTGACTGAAAAATGGCTTCTTCGTTTTTTTTTTCATTTTGTGATTATAGATTGGAATCTAATGTTCCACATGACGTGGTCCAGAAGACATTTGTATTATGAAACCTAAAAAAACAGACAGAGTACAAAAAGTCTCTAGTGGACAGAAGTGGTTCTGTCTAGCCACGATTCTTGTATTCTGAAGTTTTGGGAAAAGAAGACGTTTACAAAACCGAACAACGTGCATAAGAAAAATAAAATTGTGAAATAAAGTAAACATTGAGCTGGAACGAAGCAGTTCAAATCTGTTGATGTGTTCTAAGCTAAAATAAGATCTAATCGGGGGTAAGGAAACAACGAGATCAAAGATTAATTTACTTTTTGCTGACTAGGATTTACTTTTTCTTTTGAGAACTAGTTTAGAAGATTTTTTCGTTTTGGGGAAGATAAAGTTACAAAGATACCGGAAATATTCTAATTGAAGGCCACCCTATGCTTGCACTTTGAGCTCACCTATCTTGATTTCCATAAAAGATAACAAAAATCTATCAACAGCTAAAATGTTTGTCATAATATCACCAAAATTTTATTTGTTGACACATTTTGGGTATCTCTTATAGAAGTTGAGATAATTGAGCTCAACGTACAATTATAAAATGGCCTTCTATCAGAGCCTGAACGGAATATGCGATAGGTGTAATGGCCAGTG</canonical>
            <polymorphic>CGTAGATTTGCATAGACATTCAATATCGAGAATCTAGAAGAAGATTCAATACTCAAATTGAAAAAAAAATCAAAACGGAAAGAGTGGGAAGAACAATTGAATTCCAGTTTTACGAGAAAGAATCGACTTGTTGCAAGAAGATATAACTCAGAACATGAACGAAAATTCAGTTAGGAAAAATGTGAGAATCAGGTCGGAAATAGGATTTCAGTCTTGGATTTCCAGTTCATTTTTTTTGATAAGCCCCTCCTCACAAGCTAATTTTTTGGATATACTCTATGACTAAAAATGTATTTTTTAATAAATAGTAGTAGTGACTGAAAAATGGCTTCTTCGTTTTTTTTTTCATTTTGTGATTATAGATTGGAATCTAATGTTCCACATGACGTGGTCCAGAAGACATTTGTATTATGAAACCTAAAAAAACAGACAGAGTACAAAAAGTCTCTAGTGGACAGAAGTGGTTCTGTCTAGCCACGATTCTTGTATTCTGAAGTTTYGGGAAAAGAAGACGTTTACAAAACCGAACAACGTGCATAAGAAAAATAAAATTGTGAAATAAAGTAAACATTGAGCTGGAACGAAGCAGTTCAAATCTGTTGATGTGTTCTAAGCTAAAATAAGATCTAATCGGGGGTAAGGAAACAACGAGATCAAAGATTAATTTACTTTTTGCTGACTAGGATTTACTTTTTCTTTTGAGAACTAGTTTAGAAGATTTTTTCGTTTTGGGGAAGATAAAGTTACAAAGATACCGGAAATATTCTAATTGAAGGCCACCCTATGCTTGCACTTTGAGCTCACCTATCTTGATTTCCATAAAAGATAACAAAAATCTATCAACAGCTAAAATGTTTGTCATAATATCACCAAAATTTTATTTGTTGACACATTTTGGGTATCTCTTATAGAAGTTGAGATAATTGAGCTCAACGTACAATTATAAAATGGCCTTCTATCAGAGCCTGAACGGAATATGCGATAGGTGTAATGGCCAGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAAAAGTCTCTAGTGGACAGAA</pcr_primer_p1>
		<pcr_primer_p2>AATCCTAGTCAGCAAAAAGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAAAGTCTCTAGTGGACAGAAGTGGTTCTGTCTAGCCACGATTCTTGTATTCTGAAGTTTTGGGAAAAGAAGACGTTTACAAAACCGAACAACGTGCATAAGAAAAATAAAATTGTGAAATAAAGTAAACATTGAGCTGGAACGAAGCAGTTCAAATCTGTTGATGTGTTCTAAGCTAAAATAAGATCTAATCGGGGGTAAGGAAACAACGAGATCAAAGATTAATTTACTTTTTGCTGACTAGGATT</canonical_amplicon>
		<polymorphic_amplicon>CAAAAAGTCTCTAGTGGACAGAAGTGGTTCTGTCTAGCCACGATTCTTGTATTCTGAAGTTTYGGGAAAAGAAGACGTTTACAAAACCGAACAACGTGCATAAGAAAAATAAAATTGTGAAATAAAGTAAACATTGAGCTGGAACGAAGCAGTTCAAATCTGTTGATGTGTTCTAAGCTAAAATAAGATCTAATCGGGGGTAAGGAAACAACGAGATCAAAGATTAATTTACTTTTTGCTGACTAGGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39534</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>264444</contig_pos>
        <strand>+</strand>
        <context>TCTTTTTTTC[C/T]GCGTCGTTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGTAAAAGGACAAAAAACGATTTAAATCCAGGAATTCGGTTCTTTTTTTC</left_flank>
        <right_flank>GCGTCGTTTCAAATCCGATTCTAAACTGACGACGGAATAAGGAATTTTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGATATTTTCAGAAACTTTCATACATTTCTAGTTTTCTATCTTCTTATTCCAGCTTATTTTCAGCCCATGACTCTGAAAACAGAAACAACAGGTCATCTCATAAATAAGAAAACGATGTTTCTACTTCCTCTCCAACGGAACACACCCATTTCTCCAAAAAAGGAGGAAAATAACGATTCTTACCATTTCTGAGATGCCGTAAATCGACACAGTCAATGCTGTTGGCACGGTGATTCCGTGCCTGCGGGACTTCCAGTAATTGCACAATTTTGAAAAGCTGAAGAATCAGAAGTAGAACGAAAACTGAATACGTGAACTTCGAAGAATCTAACAGGAATAGAAGGCGTGAGAAATAATTCGAAGGATGATGTGATTAATTTTTGGACAAGTCTGAAGGCGTTGGAAATAAAGAAGAAGAAGCAGGAGACTGGAGAAAAAGCAAAGAATAGTAAAAGGACAAAAAACGATTTAAATCCAGGAATTCGGTTCTTTTTTTCCGCGTCGTTTCAAATCCGATTCTAAACTGACGACGGAATAAGGAATTTTCAGGAGACAAGAGTTGCAAGAATTGCAAGAAAAAAGTAAAAGAAGGATGATGACGTGGCAGAAAGATGATGCCTGATCTTTTAATTAATATGGGTCATGAAACAAAAAAGAAGGGAAAAATGAGATGAAAATTAAATGAACCGGAGGTCTAGCAGTACTTTTTATAACTTTTCTCATAAACTTGTATTATATGTATTAGACTAGCAAAGTATTGAAAATTAGTGAAATTATGAAAAATTACAAGATTGACTATAAGACTAAGAGATCTTTGAAACTTCCATTTAATAACTGAGGGTGGCTTTCGTATTTTTGTTTTTAAAGAATCTCCACCAATACCAGGTTTTTGTGACACTTCTGGCTTTGTAGACCATTGGAGTGGATCAGAAAACTGAAAAAGGGAACAGTTCGGGAAATTCAAAACAAACGAAAAAGGAAAAAGGACGAAAAAGTAG</canonical>
            <polymorphic>GTGATATTTTCAGAAACTTTCATACATTTCTAGTTTTCTATCTTCTTATTCCAGCTTATTTTCAGCCCATGACTCTGAAAACAGAAACAACAGGTCATCTCATAAATAAGAAAACGATGTTTCTACTTCCTCTCCAACGGAACACACCCATTTCTCCAAAAAAGGAGGAAAATAACGATTCTTACCATTTCTGAGATGCCGTAAATCGACACAGTCAATGCTGTTGGCACGGTGATTCCGTGCCTGCGGGACTTCCAGTAATTGCACAATTTTGAAAAGCTGAAGAATCAGAAGTAGAACGAAAACTGAATACGTGAACTTCGAAGAATCTAACAGGAATAGAAGGCGTGAGAAATAATTCGAAGGATGATGTGATTAATTTTTGGACAAGTCTGAAGGCGTTGGAAATAAAGAAGAAGAAGCAGGAGACTGGAGAAAAAGCAAAGAATAGTAAAAGGACAAAAAACGATTTAAATCCAGGAATTCGGTTCTTTTTTTCYGCGTCGTTTCAAATCCGATTCTAAACTGACGACGGAATAAGGAATTTTCAGGAGACAAGAGTTGCAAGAATTGCAAGAAAAAAGTAAAAGAAGGATGATGACGTGGCAGAAAGATGATGCCTGATCTTTTAATTAATATGGGTCATGAAACAAAAAAGAAGGGAAAAATGAGATGAAAATTAAATGAACCGGAGGTCTAGCAGTACTTTTTATAACTTTTCTCATAAACTTGTATTATATGTATTAGACTAGCAAAGTATTGAAAATTAGTGAAATTATGAAAAATTACAAGATTGACTATAAGACTAAGAGATCTTTGAAACTTCCATTTAATAACTGAGGGTGGCTTTCGTATTTTTGTTTTTAAAGAATCTCCACCAATACCAGGTTTTTGTGACACTTCTGGCTTTGTAGACCATTGGAGTGGATCAGAAAACTGAAAAAGGGAACAGTTCGGGAAATTCAAAACAAACGAAAAAGGAAAAAGGACGAAAAAGTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATAAAGAAGAAGAAGCAGGAGAC</pcr_primer_p1>
		<pcr_primer_p2>TTTTTGTTTCATGACCCATATTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATAAAGAAGAAGAAGCAGGAGACTGGAGAAAAAGCAAAGAATAGTAAAAGGACAAAAAACGATTTAAATCCAGGAATTCGGTTCTTTTTTTCCGCGTCGTTTCAAATCCGATTCTAAACTGACGACGGAATAAGGAATTTTCAGGAGACAAGAGTTGCAAGAATTGCAAGAAAAAAGTAAAAGAAGGATGATGACGTGGCAGAAAGATGATGCCTGATCTTTTAATTAATATGGGTCATGAAACAAAAA</canonical_amplicon>
		<polymorphic_amplicon>ATAAAGAAGAAGAAGCAGGAGACTGGAGAAAAAGCAAAGAATAGTAAAAGGACAAAAAACGATTTAAATCCAGGAATTCGGTTCTTTTTTTCYGCGTCGTTTCAAATCCGATTCTAAACTGACGACGGAATAAGGAATTTTCAGGAGACAAGAGTTGCAAGAATTGCAAGAAAAAAGTAAAAGAAGGATGATGACGTGGCAGAAAGATGATGCCTGATCTTTTAATTAATATGGGTCATGAAACAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39535</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>266677</contig_pos>
        <strand></strand>
        <context>GGGTCTTCCA[G/A]GAGAGTTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GTAGAAGGGTCCCTTTAATAGAAGGGCCCCTCTAATATAAGGGTCTTCCA</left_flank>
        <right_flank>GAGAGTTTTGGGAAAATGGAAGGGCCCCCTGTAATAGAGAAGGTCCCTCT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAAAATGTTGCGGCCATCTCTTCTCCTCTTTATTGATAAGAGATATTGGGTCAATCCGGGTAGCTCAAAAAAGTTTTCACGTTGTCTGATAACAGAGTAAGAACAGAAGGAAAAATGAGAGAGATATAGAAGAAGTGACGGGGATTGAGGACTACAACATATTTGATGACACAAATCTGGAATGTTCTCATGGAATTTTCTCATGGAAATTGTATGAGCAAAGATGATAAATGATTAAAAGTCTATGAGAGAGTGTGTTTTGTTAGGTCGTGAGAGTCGCGGGAAAACAACATTTTGAATGAATACTAGACAACGGATGACAGGAAATTGAGAAGTATATTTGAGATAGAAACAATTTCCGTTCGCTGTTTGGCACATGGGATTATGAATATTTTTCAATGTTGTCGGATAAAAGTTACACGGAATTTAATTTTCCGTAAAAACTGTTGTAGAAGGGTCCCTTTAATAGAAGGGCCCCTCTAATATAAGGGTCTTCCAGGAGAGTTTTGGGAAAATGGAAGGGCCCCCTGTAATAGAGAAGGTCCCTCTTCAAAATGGATTGTTTAAAATTGAAAATTTCTGTACGTTATCAGTAAAAATATTTCAAAAATTCCAAAAATTTCTCAGAAATTGGTTGAAACACTTCTTTGTAGCTCAAAAATGGCTCAATTTTGGTGAAATCAATATATTTTCATAAATTTTGAACGCAAATTCGTCGAATTTTTCTATGAAAAACTTGAGGAACAATAGCTGGAAAAATAGAAGGGCCCTAGTAACAGAAGGGCCCTCCGGAAGTACTTTGGAACAAAAAAAAGGGCCGGCCCTTTTAATACAGGTTTTACGGTAGTTTCGCCTACCTAATAGAAGCTTACCCACACCGTCAACTTTGAGCCCAATTATCTCGATTCTTGTGAAAGATGTCATAATTTTGTCAACTGATAAAATATTAGTGATGTTCTGATTAATAATTCATCAATTGACTTATTTTTGAAATCTTTC</canonical>
            <polymorphic>AGAAAATGTTGCGGCCATCTCTTCTCCTCTTTATTGATAAGAGATATTGGGTCAATCCGGGTAGCTCAAAAAAGTTTTCACGTTGTCTGATAACAGAGTAAGAACAGAAGGAAAAATGAGAGAGATATAGAAGAAGTGACGGGGATTGAGGACTACAACATATTTGATGACACAAATCTGGAATGTTCTCATGGAATTTTCTCATGGAAATTGTATGAGCAAAGATGATAAATGATTAAAAGTCTATGAGAGAGTGTGTTTTGTTAGGTCGTGAGAGTCGCGGGAAAACAACATTTTGAATGAATACTAGACAACGGATGACAGGAAATTGAGAAGTATATTTGAGATAGAAACAATTTCCGTTCGCTGTTTGGCACATGGGATTATGAATATTTTTCAATGTTGTCGGATAAAAGTTACACGGAATTTAATTTTCCGTAAAAACTGTTGTAGAAGGGTCCCTTTAATAGAAGGGCCCCTCTAATATAAGGGTCTTCCARGAGAGTTTTGGGAAAATGGAAGGGCCCCCTGTAATAGAGAAGGTCCCTCTTCAAAATGGATTGTTTAAAATTGAAAATTTCTGTACGTTATCAGTAAAAATATTTCAAAAATTCCAAAAATTTCTCAGAAATTGGTTGAAACACTTCTTTGTAGCTCAAAAATGGCTCAATTTTGGTGAAATCAATATATTTTCATAAATTTTGAACGCAAATTCGTCGAATTTTTCTATGAAAAACTTGAGGAACAATAGCTGGAAAAATAGAAGGGCCCTAGTAACAGAAGGGCCCTCCGGAAGTACTTTGGAACAAAAAAAAGGGCCGGCCCTTTTAATACAGGTTTTACGGTAGTTTCGCCTACCTAATAGAAGCTTACCCACACCGTCAACTTTGAGCCCAATTATCTCGATTCTTGTGAAAGATGTCATAATTTTGTCAACTGATAAAATATTAGTGATGTTCTGATTAATAATTCATCAATTGACTTATTTTTGAAATCTTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>502 440 58</canonical_bands>
                <polymorphic_bands>942 58</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCCNGGA</site>
                <isoschizomers>
                    <enzyme>PfoI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGGAAATTGAGAAGTATATTTGA</pcr_primer_p1>
		<pcr_primer_p2>TAAACAATCCATTTTGAAGAGG</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CAGGAAATTGAGAAGTATATTTGAGATAGAAACAATTTCCGTTCGCTGTTTGGCACATGGGATTATGAATATTTTTCAATGTTGTCGGATAAAAGTTACACGGAATTTAATTTTCCGTAAAAACTGTTGTAGAAGGGTCCCTTTAATAGAAGGGCCCCTCTAATATAAGGGTCTTCCAGGAGAGTTTTGGGAAAATGGAAGGGCCCCCTGTAATAGAGAAGGTCCCTCTTCAAAATGGATTGTTTA</canonical_amplicon>
		<polymorphic_amplicon>CAGGAAATTGAGAAGTATATTTGAGATAGAAACAATTTCCGTTCGCTGTTTGGCACATGGGATTATGAATATTTTTCAATGTTGTCGGATAAAAGTTACACGGAATTTAATTTTCCGTAAAAACTGTTGTAGAAGGGTCCCTTTAATAGAAGGGCCCCTCTAATATAAGGGTCTTCCARGAGAGTTTTGGGAAAATGGAAGGGCCCCCTGTAATAGAGAAGGTCCCTCTTCAAAATGGATTGTTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39536</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>266721</contig_pos>
        <strand></strand>
        <context>ATAGAGAAGG[T/A]CCCTCTTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CTTCCAGGAGAGTTTTGGGAAAATGGAAGGGCCCCCTGTAATAGAGAAGG</left_flank>
        <right_flank>CCCTCTTCAAAATGGATTGTTTAAAATTGAAAATTTCTGTACGTTATCAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTGGGTCAATCCGGGTAGCTCAAAAAAGTTTTCACGTTGTCTGATAACAGAGTAAGAACAGAAGGAAAAATGAGAGAGATATAGAAGAAGTGACGGGGATTGAGGACTACAACATATTTGATGACACAAATCTGGAATGTTCTCATGGAATTTTCTCATGGAAATTGTATGAGCAAAGATGATAAATGATTAAAAGTCTATGAGAGAGTGTGTTTTGTTAGGTCGTGAGAGTCGCGGGAAAACAACATTTTGAATGAATACTAGACAACGGATGACAGGAAATTGAGAAGTATATTTGAGATAGAAACAATTTCCGTTCGCTGTTTGGCACATGGGATTATGAATATTTTTCAATGTTGTCGGATAAAAGTTACACGGAATTTAATTTTCCGTAAAAACTGTTGTAGAAGGGTCCCTTTAATAGAAGGGCCCCTCTAATATAAGGGTCTTCCAGGAGAGTTTTGGGAAAATGGAAGGGCCCCCTGTAATAGAGAAGGTCCCTCTTCAAAATGGATTGTTTAAAATTGAAAATTTCTGTACGTTATCAGTAAAAATATTTCAAAAATTCCAAAAATTTCTCAGAAATTGGTTGAAACACTTCTTTGTAGCTCAAAAATGGCTCAATTTTGGTGAAATCAATATATTTTCATAAATTTTGAACGCAAATTCGTCGAATTTTTCTATGAAAAACTTGAGGAACAATAGCTGGAAAAATAGAAGGGCCCTAGTAACAGAAGGGCCCTCCGGAAGTACTTTGGAACAAAAAAAAGGGCCGGCCCTTTTAATACAGGTTTTACGGTAGTTTCGCCTACCTAATAGAAGCTTACCCACACCGTCAACTTTGAGCCCAATTATCTCGATTCTTGTGAAAGATGTCATAATTTTGTCAACTGATAAAATATTAGTGATGTTCTGATTAATAATTCATCAATTGACTTATTTTTGAAATCTTTCATAAAAATTGAGATAATTGATTTCAAAGTTGAAGGGTTGGGTGG</canonical>
            <polymorphic>TATTGGGTCAATCCGGGTAGCTCAAAAAAGTTTTCACGTTGTCTGATAACAGAGTAAGAACAGAAGGAAAAATGAGAGAGATATAGAAGAAGTGACGGGGATTGAGGACTACAACATATTTGATGACACAAATCTGGAATGTTCTCATGGAATTTTCTCATGGAAATTGTATGAGCAAAGATGATAAATGATTAAAAGTCTATGAGAGAGTGTGTTTTGTTAGGTCGTGAGAGTCGCGGGAAAACAACATTTTGAATGAATACTAGACAACGGATGACAGGAAATTGAGAAGTATATTTGAGATAGAAACAATTTCCGTTCGCTGTTTGGCACATGGGATTATGAATATTTTTCAATGTTGTCGGATAAAAGTTACACGGAATTTAATTTTCCGTAAAAACTGTTGTAGAAGGGTCCCTTTAATAGAAGGGCCCCTCTAATATAAGGGTCTTCCAGGAGAGTTTTGGGAAAATGGAAGGGCCCCCTGTAATAGAGAAGGWCCCTCTTCAAAATGGATTGTTTAAAATTGAAAATTTCTGTACGTTATCAGTAAAAATATTTCAAAAATTCCAAAAATTTCTCAGAAATTGGTTGAAACACTTCTTTGTAGCTCAAAAATGGCTCAATTTTGGTGAAATCAATATATTTTCATAAATTTTGAACGCAAATTCGTCGAATTTTTCTATGAAAAACTTGAGGAACAATAGCTGGAAAAATAGAAGGGCCCTAGTAACAGAAGGGCCCTCCGGAAGTACTTTGGAACAAAAAAAAGGGCCGGCCCTTTTAATACAGGTTTTACGGTAGTTTCGCCTACCTAATAGAAGCTTACCCACACCGTCAACTTTGAGCCCAATTATCTCGATTCTTGTGAAAGATGTCATAATTTTGTCAACTGATAAAATATTAGTGATGTTCTGATTAATAATTCATCAATTGACTTATTTTTGAAATCTTTCATAAAAATTGAGATAATTGATTTCAAAGTTGAAGGGTTGGGTGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>502 413 85</canonical_bands>
                <polymorphic_bands>587 413</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGWCCY</site>
                <isoschizomers>
                    <enzyme>PpuMI</enzyme>
                    <enzyme>PpuXI</enzyme>
                    <enzyme>Psp5II</enzyme>
                    <enzyme>PspPPI</enzyme>
                </isoschizomers>
                <canonical_bands>502 413 85</canonical_bands>
                <polymorphic_bands>587 413</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATAAAAGTTACACGGAATTTA</pcr_primer_p1>
		<pcr_primer_p2>ATGGGCATGATTATCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>718</pcr_amplicon_size>
		<canonical_amplicon>GGATAAAAGTTACACGGAATTTAATTTTCCGTAAAAACTGTTGTAGAAGGGTCCCTTTAATAGAAGGGCCCCTCTAATATAAGGGTCTTCCAGGAGAGTTTTGGGAAAATGGAAGGGCCCCCTGTAATAGAGAAGGTCCCTCTTCAAAATGGATTG</canonical_amplicon>
		<polymorphic_amplicon>GGATAAAAGTTACACGGAATTTAATTTTCCGTAAAAACTGTTGTAGAAGGGTCCCTTTAATAGAAGGGCCCCTCTAATATAAGGGTCTTCCAGGAGAGTTTTGGGAAAATGGAAGGGCCCCCTGTAATAGAGAAGGWCCCTCTTCAAAATGGATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39537</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>266815</contig_pos>
        <strand></strand>
        <context>gaaattggtt[G/A]aaacacttct</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTATCAGTAAAAATATTTCAAAAATTCCAAAAATTTCTCAGAAATTGGTT</left_flank>
        <right_flank>AAACACTTCTTTGTAGCTCAAAAATGGCTCAATTTTGGTGAAATCAATAT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACGGGGATTGAGGACTACAACATATTTGATGACACAAATCTGGAATGTTCTCATGGAATTTTCTCATGGAAATTGTATGAGCAAAGATGATAAATGATTAAAAGTCTATGAGAGAGTGTGTTTTGTTAGGTCGTGAGAGTCGCGGGAAAACAACATTTTGAATGAATACTAGACAACGGATGACAGGAAATTGAGAAGTATATTTGAGATAGAAACAATTTCCGTTCGCTGTTTGGCACATGGGATTATGAATATTTTTCAATGTTGTCGGATAAAAGTTACACGGAATTTAATTTTCCGTAAAAACTGTTGTAGAAGGGTCCCTTTAATAGAAGGGCCCCTCTAATATAAGGGTCTTCCAGGAGAGTTTTGGGAAAATGGAAGGGCCCCCTGTAATAGAGAAGGTCCCTCTTCAAAATGGATTGTTTAAAATTGAAAATTTCTGTACGTTATCAGTAAAAATATTTCAAAAATTCCAAAAATTTCTCAGAAATTGGTTGAAACACTTCTTTGTAGCTCAAAAATGGCTCAATTTTGGTGAAATCAATATATTTTCATAAATTTTGAACGCAAATTCGTCGAATTTTTCTATGAAAAACTTGAGGAACAATAGCTGGAAAAATAGAAGGGCCCTAGTAACAGAAGGGCCCTCCGGAAGTACTTTGGAACAAAAAAAAGGGCCGGCCCTTTTAATACAGGTTTTACGGTAGTTTCGCCTACCTAATAGAAGCTTACCCACACCGTCAACTTTGAGCCCAATTATCTCGATTCTTGTGAAAGATGTCATAATTTTGTCAACTGATAAAATATTAGTGATGTTCTGATTAATAATTCATCAATTGACTTATTTTTGAAATCTTTCATAAAAATTGAGATAATTGATTTCAAAGTTGAAGGGTTGGGTGGGCTCTAATTAGAGGAAATACGGTAATTCTTTTTGTTTTTACTTAAAAAAACGACAGAGATTTTTTTGATAATCATGCCCATTATTCCCATGTTT</canonical>
            <polymorphic>ACGGGGATTGAGGACTACAACATATTTGATGACACAAATCTGGAATGTTCTCATGGAATTTTCTCATGGAAATTGTATGAGCAAAGATGATAAATGATTAAAAGTCTATGAGAGAGTGTGTTTTGTTAGGTCGTGAGAGTCGCGGGAAAACAACATTTTGAATGAATACTAGACAACGGATGACAGGAAATTGAGAAGTATATTTGAGATAGAAACAATTTCCGTTCGCTGTTTGGCACATGGGATTATGAATATTTTTCAATGTTGTCGGATAAAAGTTACACGGAATTTAATTTTCCGTAAAAACTGTTGTAGAAGGGTCCCTTTAATAGAAGGGCCCCTCTAATATAAGGGTCTTCCAGGAGAGTTTTGGGAAAATGGAAGGGCCCCCTGTAATAGAGAAGGTCCCTCTTCAAAATGGATTGTTTAAAATTGAAAATTTCTGTACGTTATCAGTAAAAATATTTCAAAAATTCCAAAAATTTCTCAGAAATTGGTTRAAACACTTCTTTGTAGCTCAAAAATGGCTCAATTTTGGTGAAATCAATATATTTTCATAAATTTTGAACGCAAATTCGTCGAATTTTTCTATGAAAAACTTGAGGAACAATAGCTGGAAAAATAGAAGGGCCCTAGTAACAGAAGGGCCCTCCGGAAGTACTTTGGAACAAAAAAAAGGGCCGGCCCTTTTAATACAGGTTTTACGGTAGTTTCGCCTACCTAATAGAAGCTTACCCACACCGTCAACTTTGAGCCCAATTATCTCGATTCTTGTGAAAGATGTCATAATTTTGTCAACTGATAAAATATTAGTGATGTTCTGATTAATAATTCATCAATTGACTTATTTTTGAAATCTTTCATAAAAATTGAGATAATTGATTTCAAAGTTGAAGGGTTGGGTGGGCTCTAATTAGAGGAAATACGGTAATTCTTTTTGTTTTTACTTAAAAAAACGACAGAGATTTTTTTGATAATCATGCCCATTATTCCCATGTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>504 353 143</canonical_bands>
                <polymorphic_bands>857 143</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTCTTCAAAATGGATTGTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGGGCATGATTATCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>580</pcr_amplicon_size>
		<canonical_amplicon>CCTCTTCAAAATGGATTGTTTAAAATTGAAAATTTCTGTACGTTATCAGTAAAAATATTTCAAAAATTCCAAAAATTTCTCAGAAATTGGTTGAAACACTTCTTTGTAGCTCAAAAATGGCTCAATTTTGGTGAAATCAATATATTTTCATAAATTTTGAACGCAAATTCGTCGAATTTTTCTATGAAAAACTTGAGGAACAATAGCTGGAAAAATAGAAGGGCCCTAGTAACAGAAGGGCCCTCCGGAAGTACTTTGGAACAAAAAAAAGGGCCGGCCCTTTTAATACAGGTTTTACGGTAGTTTCGCCTACCTAATAGAAGCTTACCCACACCGTCAACTTTGAGCCCAATTATCTCGATTCTTGTGAAAGATGTCATAATTTTGTCAACTGATAAAATATTAGTGATGTTCTGATTAATAATTCATCAATTGACTTATTTTTGAAATCTTTCATAAAAATTGAGATAATTGATTTCAAAGTTGAAGGGTTGGGTGGGCTCTAATTAGAGGAAATACGGTAATTCTTTTTGTTTTTACTTAAAAAAACGACAGAGATTTTTTTGATAATCATGCCCAT</canonical_amplicon>
		<polymorphic_amplicon>CCTCTTCAAAATGGATTGTTTAAAATTGAAAATTTCTGTACGTTATCAGTAAAAATATTTCAAAAATTCCAAAAATTTCTCAGAAATTGGTTRAAACACTTCTTTGTAGCTCAAAAATGGCTCAATTTTGGTGAAATCAATATATTTTCATAAATTTTGAACGCAAATTCGTCGAATTTTTCTATGAAAAACTTGAGGAACAATAGCTGGAAAAATAGAAGGGCCCTAGTAACAGAAGGGCCCTCCGGAAGTACTTTGGAACAAAAAAAAGGGCCGGCCCTTTTAATACAGGTTTTACGGTAGTTTCGCCTACCTAATAGAAGCTTACCCACACCGTCAACTTTGAGCCCAATTATCTCGATTCTTGTGAAAGATGTCATAATTTTGTCAACTGATAAAATATTAGTGATGTTCTGATTAATAATTCATCAATTGACTTATTTTTGAAATCTTTCATAAAAATTGAGATAATTGATTTCAAAGTTGAAGGGTTGGGTGGGCTCTAATTAGAGGAAATACGGTAATTCTTTTTGTTTTTACTTAAAAAAACGACAGAGATTTTTTTGATAATCATGCCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39538</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>266865</contig_pos>
        <strand></strand>
        <context>gaaatcaata[T/G]attttcataa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GAAACACTTCTTTGTAGCTCAAAAATGGCTCAATTTTGGTGAAATCAATA</left_flank>
        <right_flank>ATTTTCATAAATTTTGAACGCAAATTCGTCGAATTTTTCTATGAAAAACT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATGGAATTTTCTCATGGAAATTGTATGAGCAAAGATGATAAATGATTAAAAGTCTATGAGAGAGTGTGTTTTGTTAGGTCGTGAGAGTCGCGGGAAAACAACATTTTGAATGAATACTAGACAACGGATGACAGGAAATTGAGAAGTATATTTGAGATAGAAACAATTTCCGTTCGCTGTTTGGCACATGGGATTATGAATATTTTTCAATGTTGTCGGATAAAAGTTACACGGAATTTAATTTTCCGTAAAAACTGTTGTAGAAGGGTCCCTTTAATAGAAGGGCCCCTCTAATATAAGGGTCTTCCAGGAGAGTTTTGGGAAAATGGAAGGGCCCCCTGTAATAGAGAAGGTCCCTCTTCAAAATGGATTGTTTAAAATTGAAAATTTCTGTACGTTATCAGTAAAAATATTTCAAAAATTCCAAAAATTTCTCAGAAATTGGTTGAAACACTTCTTTGTAGCTCAAAAATGGCTCAATTTTGGTGAAATCAATATATTTTCATAAATTTTGAACGCAAATTCGTCGAATTTTTCTATGAAAAACTTGAGGAACAATAGCTGGAAAAATAGAAGGGCCCTAGTAACAGAAGGGCCCTCCGGAAGTACTTTGGAACAAAAAAAAGGGCCGGCCCTTTTAATACAGGTTTTACGGTAGTTTCGCCTACCTAATAGAAGCTTACCCACACCGTCAACTTTGAGCCCAATTATCTCGATTCTTGTGAAAGATGTCATAATTTTGTCAACTGATAAAATATTAGTGATGTTCTGATTAATAATTCATCAATTGACTTATTTTTGAAATCTTTCATAAAAATTGAGATAATTGATTTCAAAGTTGAAGGGTTGGGTGGGCTCTAATTAGAGGAAATACGGTAATTCTTTTTGTTTTTACTTAAAAAAACGACAGAGATTTTTTTGATAATCATGCCCATTATTCCCATGTTTCTTTCTTTTTTGCTCTGTGCTTCTTTTCTTTTGCTTTCCACCTGATTCCC</canonical>
            <polymorphic>TCATGGAATTTTCTCATGGAAATTGTATGAGCAAAGATGATAAATGATTAAAAGTCTATGAGAGAGTGTGTTTTGTTAGGTCGTGAGAGTCGCGGGAAAACAACATTTTGAATGAATACTAGACAACGGATGACAGGAAATTGAGAAGTATATTTGAGATAGAAACAATTTCCGTTCGCTGTTTGGCACATGGGATTATGAATATTTTTCAATGTTGTCGGATAAAAGTTACACGGAATTTAATTTTCCGTAAAAACTGTTGTAGAAGGGTCCCTTTAATAGAAGGGCCCCTCTAATATAAGGGTCTTCCAGGAGAGTTTTGGGAAAATGGAAGGGCCCCCTGTAATAGAGAAGGTCCCTCTTCAAAATGGATTGTTTAAAATTGAAAATTTCTGTACGTTATCAGTAAAAATATTTCAAAAATTCCAAAAATTTCTCAGAAATTGGTTGAAACACTTCTTTGTAGCTCAAAAATGGCTCAATTTTGGTGAAATCAATAKATTTTCATAAATTTTGAACGCAAATTCGTCGAATTTTTCTATGAAAAACTTGAGGAACAATAGCTGGAAAAATAGAAGGGCCCTAGTAACAGAAGGGCCCTCCGGAAGTACTTTGGAACAAAAAAAAGGGCCGGCCCTTTTAATACAGGTTTTACGGTAGTTTCGCCTACCTAATAGAAGCTTACCCACACCGTCAACTTTGAGCCCAATTATCTCGATTCTTGTGAAAGATGTCATAATTTTGTCAACTGATAAAATATTAGTGATGTTCTGATTAATAATTCATCAATTGACTTATTTTTGAAATCTTTCATAAAAATTGAGATAATTGATTTCAAAGTTGAAGGGTTGGGTGGGCTCTAATTAGAGGAAATACGGTAATTCTTTTTGTTTTTACTTAAAAAAACGACAGAGATTTTTTTGATAATCATGCCCATTATTCCCATGTTTCTTTCTTTTTTGCTCTGTGCTTCTTTTCTTTTGCTTTCCACCTGATTCCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTCTTCAAAATGGATTGTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGGGCATGATTATCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>580</pcr_amplicon_size>
		<canonical_amplicon>CCTCTTCAAAATGGATTGTTTAAAATTGAAAATTTCTGTACGTTATCAGTAAAAATATTTCAAAAATTCCAAAAATTTCTCAGAAATTGGTTGAAACACTTCTTTGTAGCTCAAAAATGGCTCAATTTTGGTGAAATCAATATATTTTCATAAATTTTGAACGCAAATTCGTCGAATTTTTCTATGAAAAACTTGAGGAACAATAGCTGGAAAAATAGAAGGGCCCTAGTAACAGAAGGGCCCTCCGGAAGTACTTTGGAACAAAAAAAAGGGCCGGCCCTTTTAATACAGGTTTTACGGTAGTTTCGCCTACCTAATAGAAGCTTACCCACACCGTCAACTTTGAGCCCAATTATCTCGATTCTTGTGAAAGATGTCATAATTTTGTCAACTGATAAAATATTAGTGATGTTCTGATTAATAATTCATCAATTGACTTATTTTTGAAATCTTTCATAAAAATTGAGATAATTGATTTCAAAGTTGAAGGGTTGGGTGGGCTCTAATTAGAGGAAATACGGTAATTCTTTTTGTTTTTACTTAAAAAAACGACAGAGATTTTTTTGATAATCATGCCCAT</canonical_amplicon>
		<polymorphic_amplicon>CCTCTTCAAAATGGATTGTTTAAAATTGAAAATTTCTGTACGTTATCAGTAAAAATATTTCAAAAATTCCAAAAATTTCTCAGAAATTGGTTGAAACACTTCTTTGTAGCTCAAAAATGGCTCAATTTTGGTGAAATCAATAKATTTTCATAAATTTTGAACGCAAATTCGTCGAATTTTTCTATGAAAAACTTGAGGAACAATAGCTGGAAAAATAGAAGGGCCCTAGTAACAGAAGGGCCCTCCGGAAGTACTTTGGAACAAAAAAAAGGGCCGGCCCTTTTAATACAGGTTTTACGGTAGTTTCGCCTACCTAATAGAAGCTTACCCACACCGTCAACTTTGAGCCCAATTATCTCGATTCTTGTGAAAGATGTCATAATTTTGTCAACTGATAAAATATTAGTGATGTTCTGATTAATAATTCATCAATTGACTTATTTTTGAAATCTTTCATAAAAATTGAGATAATTGATTTCAAAGTTGAAGGGTTGGGTGGGCTCTAATTAGAGGAAATACGGTAATTCTTTTTGTTTTTACTTAAAAAAACGACAGAGATTTTTTTGATAATCATGCCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39539</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>266930</contig_pos>
        <strand></strand>
        <context>gaacaatagc[T/C]ggaaaaatag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TGAACGCAAATTCGTCGAATTTTTCTATGAAAAACTTGAGGAACAATAGC</left_flank>
        <right_flank>GGAAAAATAGAAGGGCCCTAGTAACAGAAGGGCCCTCCGGAAGTACTTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGTGTTTTGTTAGGTCGTGAGAGTCGCGGGAAAACAACATTTTGAATGAATACTAGACAACGGATGACAGGAAATTGAGAAGTATATTTGAGATAGAAACAATTTCCGTTCGCTGTTTGGCACATGGGATTATGAATATTTTTCAATGTTGTCGGATAAAAGTTACACGGAATTTAATTTTCCGTAAAAACTGTTGTAGAAGGGTCCCTTTAATAGAAGGGCCCCTCTAATATAAGGGTCTTCCAGGAGAGTTTTGGGAAAATGGAAGGGCCCCCTGTAATAGAGAAGGTCCCTCTTCAAAATGGATTGTTTAAAATTGAAAATTTCTGTACGTTATCAGTAAAAATATTTCAAAAATTCCAAAAATTTCTCAGAAATTGGTTGAAACACTTCTTTGTAGCTCAAAAATGGCTCAATTTTGGTGAAATCAATATATTTTCATAAATTTTGAACGCAAATTCGTCGAATTTTTCTATGAAAAACTTGAGGAACAATAGCTGGAAAAATAGAAGGGCCCTAGTAACAGAAGGGCCCTCCGGAAGTACTTTGGAACAAAAAAAAGGGCCGGCCCTTTTAATACAGGTTTTACGGTAGTTTCGCCTACCTAATAGAAGCTTACCCACACCGTCAACTTTGAGCCCAATTATCTCGATTCTTGTGAAAGATGTCATAATTTTGTCAACTGATAAAATATTAGTGATGTTCTGATTAATAATTCATCAATTGACTTATTTTTGAAATCTTTCATAAAAATTGAGATAATTGATTTCAAAGTTGAAGGGTTGGGTGGGCTCTAATTAGAGGAAATACGGTAATTCTTTTTGTTTTTACTTAAAAAAACGACAGAGATTTTTTTGATAATCATGCCCATTATTCCCATGTTTCTTTCTTTTTTGCTCTGTGCTTCTTTTCTTTTGCTTTCCACCTGATTCCCTTTTCATTTTTCTCTCACGTGTGTTTCCTTGTCAATCATTTTCAATCAACGAACTCAACCCCCAC</canonical>
            <polymorphic>GTGTGTTTTGTTAGGTCGTGAGAGTCGCGGGAAAACAACATTTTGAATGAATACTAGACAACGGATGACAGGAAATTGAGAAGTATATTTGAGATAGAAACAATTTCCGTTCGCTGTTTGGCACATGGGATTATGAATATTTTTCAATGTTGTCGGATAAAAGTTACACGGAATTTAATTTTCCGTAAAAACTGTTGTAGAAGGGTCCCTTTAATAGAAGGGCCCCTCTAATATAAGGGTCTTCCAGGAGAGTTTTGGGAAAATGGAAGGGCCCCCTGTAATAGAGAAGGTCCCTCTTCAAAATGGATTGTTTAAAATTGAAAATTTCTGTACGTTATCAGTAAAAATATTTCAAAAATTCCAAAAATTTCTCAGAAATTGGTTGAAACACTTCTTTGTAGCTCAAAAATGGCTCAATTTTGGTGAAATCAATATATTTTCATAAATTTTGAACGCAAATTCGTCGAATTTTTCTATGAAAAACTTGAGGAACAATAGCYGGAAAAATAGAAGGGCCCTAGTAACAGAAGGGCCCTCCGGAAGTACTTTGGAACAAAAAAAAGGGCCGGCCCTTTTAATACAGGTTTTACGGTAGTTTCGCCTACCTAATAGAAGCTTACCCACACCGTCAACTTTGAGCCCAATTATCTCGATTCTTGTGAAAGATGTCATAATTTTGTCAACTGATAAAATATTAGTGATGTTCTGATTAATAATTCATCAATTGACTTATTTTTGAAATCTTTCATAAAAATTGAGATAATTGATTTCAAAGTTGAAGGGTTGGGTGGGCTCTAATTAGAGGAAATACGGTAATTCTTTTTGTTTTTACTTAAAAAAACGACAGAGATTTTTTTGATAATCATGCCCATTATTCCCATGTTTCTTTCTTTTTTGCTCTGTGCTTCTTTTCTTTTGCTTTCCACCTGATTCCCTTTTCATTTTTCTCTCACGTGTGTTTCCTTGTCAATCATTTTCAATCAACGAACTCAACCCCCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>401 385 117 97</canonical_bands>
                <polymorphic_bands>401 385 214</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>222 208 153 130 86 49 46 33 24 17 17 11 4</canonical_bands>
                <polymorphic_bands>222 208 153 130 103 49 46 33 24 17 11 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTCTTCAAAATGGATTGTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGGGCATGATTATCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>580</pcr_amplicon_size>
		<canonical_amplicon>CCTCTTCAAAATGGATTGTTTAAAATTGAAAATTTCTGTACGTTATCAGTAAAAATATTTCAAAAATTCCAAAAATTTCTCAGAAATTGGTTGAAACACTTCTTTGTAGCTCAAAAATGGCTCAATTTTGGTGAAATCAATATATTTTCATAAATTTTGAACGCAAATTCGTCGAATTTTTCTATGAAAAACTTGAGGAACAATAGCTGGAAAAATAGAAGGGCCCTAGTAACAGAAGGGCCCTCCGGAAGTACTTTGGAACAAAAAAAAGGGCCGGCCCTTTTAATACAGGTTTTACGGTAGTTTCGCCTACCTAATAGAAGCTTACCCACACCGTCAACTTTGAGCCCAATTATCTCGATTCTTGTGAAAGATGTCATAATTTTGTCAACTGATAAAATATTAGTGATGTTCTGATTAATAATTCATCAATTGACTTATTTTTGAAATCTTTCATAAAAATTGAGATAATTGATTTCAAAGTTGAAGGGTTGGGTGGGCTCTAATTAGAGGAAATACGGTAATTCTTTTTGTTTTTACTTAAAAAAACGACAGAGATTTTTTTGATAATCATGCCCAT</canonical_amplicon>
		<polymorphic_amplicon>CCTCTTCAAAATGGATTGTTTAAAATTGAAAATTTCTGTACGTTATCAGTAAAAATATTTCAAAAATTCCAAAAATTTCTCAGAAATTGGTTGAAACACTTCTTTGTAGCTCAAAAATGGCTCAATTTTGGTGAAATCAATATATTTTCATAAATTTTGAACGCAAATTCGTCGAATTTTTCTATGAAAAACTTGAGGAACAATAGCYGGAAAAATAGAAGGGCCCTAGTAACAGAAGGGCCCTCCGGAAGTACTTTGGAACAAAAAAAAGGGCCGGCCCTTTTAATACAGGTTTTACGGTAGTTTCGCCTACCTAATAGAAGCTTACCCACACCGTCAACTTTGAGCCCAATTATCTCGATTCTTGTGAAAGATGTCATAATTTTGTCAACTGATAAAATATTAGTGATGTTCTGATTAATAATTCATCAATTGACTTATTTTTGAAATCTTTCATAAAAATTGAGATAATTGATTTCAAAGTTGAAGGGTTGGGTGGGCTCTAATTAGAGGAAATACGGTAATTCTTTTTGTTTTTACTTAAAAAAACGACAGAGATTTTTTTGATAATCATGCCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39540</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>266960</contig_pos>
        <strand>+</strand>
        <context>AGTAACAGAA[A/G]GGCCCTCCGG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAACTTGAGGAACAATAGCTGGAAAAATAGAAGGGCCCTAGTAACAGAA</left_flank>
        <right_flank>GGCCCTCCGGAAGTACTTTGGAACAAAAAAAAGGGCCGGCCCTTTTAATA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAAACAACATTTTGAATGAATACTAGACAACGGATGACAGGAAATTGAGAAGTATATTTGAGATAGAAACAATTTCCGTTCGCTGTTTGGCACATGGGATTATGAATATTTTTCAATGTTGTCGGATAAAAGTTACACGGAATTTAATTTTCCGTAAAAACTGTTGTAGAAGGGTCCCTTTAATAGAAGGGCCCCTCTAATATAAGGGTCTTCCAGGAGAGTTTTGGGAAAATGGAAGGGCCCCCTGTAATAGAGAAGGTCCCTCTTCAAAATGGATTGTTTAAAATTGAAAATTTCTGTACGTTATCAGTAAAAATATTTCAAAAATTCCAAAAATTTCTCAGAAATTGGTTGAAACACTTCTTTGTAGCTCAAAAATGGCTCAATTTTGGTGAAATCAATATATTTTCATAAATTTTGAACGCAAATTCGTCGAATTTTTCTATGAAAAACTTGAGGAACAATAGCTGGAAAAATAGAAGGGCCCTAGTAACAGAAGGGCCCTCCGGAAGTACTTTGGAACAAAAAAAAGGGCCGGCCCTTTTAATACAGGTTTTACGGTAGTTTCGCCTACCTAATAGAAGCTTACCCACACCGTCAACTTTGAGCCCAATTATCTCGATTCTTGTGAAAGATGTCATAATTTTGTCAACTGATAAAATATTAGTGATGTTCTGATTAATAATTCATCAATTGACTTATTTTTGAAATCTTTCATAAAAATTGAGATAATTGATTTCAAAGTTGAAGGGTTGGGTGGGCTCTAATTAGAGGAAATACGGTAATTCTTTTTGTTTTTACTTAAAAAAACGACAGAGATTTTTTTGATAATCATGCCCATTATTCCCATGTTTCTTTCTTTTTTGCTCTGTGCTTCTTTTCTTTTGCTTTCCACCTGATTCCCTTTTCATTTTTCTCTCACGTGTGTTTCCTTGTCAATCATTTTCAATCAACGAACTCAACCCCCACGGGCACCGAATCATCTTCATATTCTTTTTG</canonical>
            <polymorphic>GAAAACAACATTTTGAATGAATACTAGACAACGGATGACAGGAAATTGAGAAGTATATTTGAGATAGAAACAATTTCCGTTCGCTGTTTGGCACATGGGATTATGAATATTTTTCAATGTTGTCGGATAAAAGTTACACGGAATTTAATTTTCCGTAAAAACTGTTGTAGAAGGGTCCCTTTAATAGAAGGGCCCCTCTAATATAAGGGTCTTCCAGGAGAGTTTTGGGAAAATGGAAGGGCCCCCTGTAATAGAGAAGGTCCCTCTTCAAAATGGATTGTTTAAAATTGAAAATTTCTGTACGTTATCAGTAAAAATATTTCAAAAATTCCAAAAATTTCTCAGAAATTGGTTGAAACACTTCTTTGTAGCTCAAAAATGGCTCAATTTTGGTGAAATCAATATATTTTCATAAATTTTGAACGCAAATTCGTCGAATTTTTCTATGAAAAACTTGAGGAACAATAGCTGGAAAAATAGAAGGGCCCTAGTAACAGAARGGCCCTCCGGAAGTACTTTGGAACAAAAAAAAGGGCCGGCCCTTTTAATACAGGTTTTACGGTAGTTTCGCCTACCTAATAGAAGCTTACCCACACCGTCAACTTTGAGCCCAATTATCTCGATTCTTGTGAAAGATGTCATAATTTTGTCAACTGATAAAATATTAGTGATGTTCTGATTAATAATTCATCAATTGACTTATTTTTGAAATCTTTCATAAAAATTGAGATAATTGATTTCAAAGTTGAAGGGTTGGGTGGGCTCTAATTAGAGGAAATACGGTAATTCTTTTTGTTTTTACTTAAAAAAACGACAGAGATTTTTTTGATAATCATGCCCATTATTCCCATGTTTCTTTCTTTTTTGCTCTGTGCTTCTTTTCTTTTGCTTTCCACCTGATTCCCTTTTCATTTTTCTCTCACGTGTGTTTCCTTGTCAATCATTTTCAATCAACGAACTCAACCCCCACGGGCACCGAATCATCTTCATATTCTTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGGCCC</site>
                <isoschizomers>
                    <enzyme>ApaI</enzyme>
                    <enzyme>Bsp120I</enzyme>
                    <enzyme>PspOMI</enzyme>
                </isoschizomers>
                <canonical_bands>496 244 194 49 17</canonical_bands>
                <polymorphic_bands>513 244 194 49</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>244 236 194 153 107 49 17</canonical_bands>
                <polymorphic_bands>244 236 194 153 124 49</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>471 244 194 49 25 17</canonical_bands>
                <polymorphic_bands>488 244 194 49 25</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>244 211 194 153 107 49 25 17</canonical_bands>
                <polymorphic_bands>244 211 194 153 124 49 25</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>472 224 175 49 26 20 17 17</canonical_bands>
                <polymorphic_bands>489 224 175 49 26 20 17</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>500 224 174 49 20 17 16</canonical_bands>
                <polymorphic_bands>517 224 174 49 20 16</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>459 224 177 49 33 20 17 16 5</canonical_bands>
                <polymorphic_bands>459 224 177 49 32 20 18 16 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTCTTCAAAATGGATTGTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGGGCATGATTATCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>580</pcr_amplicon_size>
		<canonical_amplicon>CCTCTTCAAAATGGATTGTTTAAAATTGAAAATTTCTGTACGTTATCAGTAAAAATATTTCAAAAATTCCAAAAATTTCTCAGAAATTGGTTGAAACACTTCTTTGTAGCTCAAAAATGGCTCAATTTTGGTGAAATCAATATATTTTCATAAATTTTGAACGCAAATTCGTCGAATTTTTCTATGAAAAACTTGAGGAACAATAGCTGGAAAAATAGAAGGGCCCTAGTAACAGAAGGGCCCTCCGGAAGTACTTTGGAACAAAAAAAAGGGCCGGCCCTTTTAATACAGGTTTTACGGTAGTTTCGCCTACCTAATAGAAGCTTACCCACACCGTCAACTTTGAGCCCAATTATCTCGATTCTTGTGAAAGATGTCATAATTTTGTCAACTGATAAAATATTAGTGATGTTCTGATTAATAATTCATCAATTGACTTATTTTTGAAATCTTTCATAAAAATTGAGATAATTGATTTCAAAGTTGAAGGGTTGGGTGGGCTCTAATTAGAGGAAATACGGTAATTCTTTTTGTTTTTACTTAAAAAAACGACAGAGATTTTTTTGATAATCATGCCCAT</canonical_amplicon>
		<polymorphic_amplicon>CCTCTTCAAAATGGATTGTTTAAAATTGAAAATTTCTGTACGTTATCAGTAAAAATATTTCAAAAATTCCAAAAATTTCTCAGAAATTGGTTGAAACACTTCTTTGTAGCTCAAAAATGGCTCAATTTTGGTGAAATCAATATATTTTCATAAATTTTGAACGCAAATTCGTCGAATTTTTCTATGAAAAACTTGAGGAACAATAGCTGGAAAAATAGAAGGGCCCTAGTAACAGAARGGCCCTCCGGAAGTACTTTGGAACAAAAAAAAGGGCCGGCCCTTTTAATACAGGTTTTACGGTAGTTTCGCCTACCTAATAGAAGCTTACCCACACCGTCAACTTTGAGCCCAATTATCTCGATTCTTGTGAAAGATGTCATAATTTTGTCAACTGATAAAATATTAGTGATGTTCTGATTAATAATTCATCAATTGACTTATTTTTGAAATCTTTCATAAAAATTGAGATAATTGATTTCAAAGTTGAAGGGTTGGGTGGGCTCTAATTAGAGGAAATACGGTAATTCTTTTTGTTTTTACTTAAAAAAACGACAGAGATTTTTTTGATAATCATGCCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39541</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>267058</contig_pos>
        <strand></strand>
        <context>tacccacacc[G/T]tcaactttga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>ATACAGGTTTTACGGTAGTTTCGCCTACCTAATAGAAGCTTACCCACACC</left_flank>
        <right_flank>TCAACTTTGAGCCCAATTATCTCGATTCTTGTGAAAGATGTCATAATTTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTATGAATATTTTTCAATGTTGTCGGATAAAAGTTACACGGAATTTAATTTTCCGTAAAAACTGTTGTAGAAGGGTCCCTTTAATAGAAGGGCCCCTCTAATATAAGGGTCTTCCAGGAGAGTTTTGGGAAAATGGAAGGGCCCCCTGTAATAGAGAAGGTCCCTCTTCAAAATGGATTGTTTAAAATTGAAAATTTCTGTACGTTATCAGTAAAAATATTTCAAAAATTCCAAAAATTTCTCAGAAATTGGTTGAAACACTTCTTTGTAGCTCAAAAATGGCTCAATTTTGGTGAAATCAATATATTTTCATAAATTTTGAACGCAAATTCGTCGAATTTTTCTATGAAAAACTTGAGGAACAATAGCTGGAAAAATAGAAGGGCCCTAGTAACAGAAGGGCCCTCCGGAAGTACTTTGGAACAAAAAAAAGGGCCGGCCCTTTTAATACAGGTTTTACGGTAGTTTCGCCTACCTAATAGAAGCTTACCCACACCGTCAACTTTGAGCCCAATTATCTCGATTCTTGTGAAAGATGTCATAATTTTGTCAACTGATAAAATATTAGTGATGTTCTGATTAATAATTCATCAATTGACTTATTTTTGAAATCTTTCATAAAAATTGAGATAATTGATTTCAAAGTTGAAGGGTTGGGTGGGCTCTAATTAGAGGAAATACGGTAATTCTTTTTGTTTTTACTTAAAAAAACGACAGAGATTTTTTTGATAATCATGCCCATTATTCCCATGTTTCTTTCTTTTTTGCTCTGTGCTTCTTTTCTTTTGCTTTCCACCTGATTCCCTTTTCATTTTTCTCTCACGTGTGTTTCCTTGTCAATCATTTTCAATCAACGAACTCAACCCCCACGGGCACCGAATCATCTTCATATTCTTTTTGACACATTGAGATATATACACAACAAAAAATACCTTTTTTCTCACCACATTTATCTTTCGTCTGTCATTTTTTTGTTCATCGATGAATTTGTTTTGAGC</canonical>
            <polymorphic>GATTATGAATATTTTTCAATGTTGTCGGATAAAAGTTACACGGAATTTAATTTTCCGTAAAAACTGTTGTAGAAGGGTCCCTTTAATAGAAGGGCCCCTCTAATATAAGGGTCTTCCAGGAGAGTTTTGGGAAAATGGAAGGGCCCCCTGTAATAGAGAAGGTCCCTCTTCAAAATGGATTGTTTAAAATTGAAAATTTCTGTACGTTATCAGTAAAAATATTTCAAAAATTCCAAAAATTTCTCAGAAATTGGTTGAAACACTTCTTTGTAGCTCAAAAATGGCTCAATTTTGGTGAAATCAATATATTTTCATAAATTTTGAACGCAAATTCGTCGAATTTTTCTATGAAAAACTTGAGGAACAATAGCTGGAAAAATAGAAGGGCCCTAGTAACAGAAGGGCCCTCCGGAAGTACTTTGGAACAAAAAAAAGGGCCGGCCCTTTTAATACAGGTTTTACGGTAGTTTCGCCTACCTAATAGAAGCTTACCCACACCKTCAACTTTGAGCCCAATTATCTCGATTCTTGTGAAAGATGTCATAATTTTGTCAACTGATAAAATATTAGTGATGTTCTGATTAATAATTCATCAATTGACTTATTTTTGAAATCTTTCATAAAAATTGAGATAATTGATTTCAAAGTTGAAGGGTTGGGTGGGCTCTAATTAGAGGAAATACGGTAATTCTTTTTGTTTTTACTTAAAAAAACGACAGAGATTTTTTTGATAATCATGCCCATTATTCCCATGTTTCTTTCTTTTTTGCTCTGTGCTTCTTTTCTTTTGCTTTCCACCTGATTCCCTTTTCATTTTTCTCTCACGTGTGTTTCCTTGTCAATCATTTTCAATCAACGAACTCAACCCCCACGGGCACCGAATCATCTTCATATTCTTTTTGACACATTGAGATATATACACAACAAAAAATACCTTTTTTCTCACCACATTTATCTTTCGTCTGTCATTTTTTTGTTCATCGATGAATTTGTTTTGAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>398 316 185 65 36</canonical_bands>
                <polymorphic_bands>398 316 221 65</polymorphic_bands>
            </assay>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>502 447 51</canonical_bands>
                <polymorphic_bands>553 447</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 447 51</canonical_bands>
                <polymorphic_bands>553 447</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTCTTCAAAATGGATTGTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGGGCATGATTATCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>580</pcr_amplicon_size>
		<canonical_amplicon>CCTCTTCAAAATGGATTGTTTAAAATTGAAAATTTCTGTACGTTATCAGTAAAAATATTTCAAAAATTCCAAAAATTTCTCAGAAATTGGTTGAAACACTTCTTTGTAGCTCAAAAATGGCTCAATTTTGGTGAAATCAATATATTTTCATAAATTTTGAACGCAAATTCGTCGAATTTTTCTATGAAAAACTTGAGGAACAATAGCTGGAAAAATAGAAGGGCCCTAGTAACAGAAGGGCCCTCCGGAAGTACTTTGGAACAAAAAAAAGGGCCGGCCCTTTTAATACAGGTTTTACGGTAGTTTCGCCTACCTAATAGAAGCTTACCCACACCGTCAACTTTGAGCCCAATTATCTCGATTCTTGTGAAAGATGTCATAATTTTGTCAACTGATAAAATATTAGTGATGTTCTGATTAATAATTCATCAATTGACTTATTTTTGAAATCTTTCATAAAAATTGAGATAATTGATTTCAAAGTTGAAGGGTTGGGTGGGCTCTAATTAGAGGAAATACGGTAATTCTTTTTGTTTTTACTTAAAAAAACGACAGAGATTTTTTTGATAATCATGCCCAT</canonical_amplicon>
		<polymorphic_amplicon>CCTCTTCAAAATGGATTGTTTAAAATTGAAAATTTCTGTACGTTATCAGTAAAAATATTTCAAAAATTCCAAAAATTTCTCAGAAATTGGTTGAAACACTTCTTTGTAGCTCAAAAATGGCTCAATTTTGGTGAAATCAATATATTTTCATAAATTTTGAACGCAAATTCGTCGAATTTTTCTATGAAAAACTTGAGGAACAATAGCTGGAAAAATAGAAGGGCCCTAGTAACAGAAGGGCCCTCCGGAAGTACTTTGGAACAAAAAAAAGGGCCGGCCCTTTTAATACAGGTTTTACGGTAGTTTCGCCTACCTAATAGAAGCTTACCCACACCKTCAACTTTGAGCCCAATTATCTCGATTCTTGTGAAAGATGTCATAATTTTGTCAACTGATAAAATATTAGTGATGTTCTGATTAATAATTCATCAATTGACTTATTTTTGAAATCTTTCATAAAAATTGAGATAATTGATTTCAAAGTTGAAGGGTTGGGTGGGCTCTAATTAGAGGAAATACGGTAATTCTTTTTGTTTTTACTTAAAAAAACGACAGAGATTTTTTTGATAATCATGCCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39542</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>267198</contig_pos>
        <strand></strand>
        <context>agataattga[T/A]ttcaaagttg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCATCAATTGACTTATTTTTGAAATCTTTCATAAAAATTGAGATAATTGA</left_flank>
        <right_flank>TTCAAAGTTGAAGGGTTGGGTGGGCTCTAATTAGAGGAAATACGGTAATT</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGGCCCCCTGTAATAGAGAAGGTCCCTCTTCAAAATGGATTGTTTAAAATTGAAAATTTCTGTACGTTATCAGTAAAAATATTTCAAAAATTCCAAAAATTTCTCAGAAATTGGTTGAAACACTTCTTTGTAGCTCAAAAATGGCTCAATTTTGGTGAAATCAATATATTTTCATAAATTTTGAACGCAAATTCGTCGAATTTTTCTATGAAAAACTTGAGGAACAATAGCTGGAAAAATAGAAGGGCCCTAGTAACAGAAGGGCCCTCCGGAAGTACTTTGGAACAAAAAAAAGGGCCGGCCCTTTTAATACAGGTTTTACGGTAGTTTCGCCTACCTAATAGAAGCTTACCCACACCGTCAACTTTGAGCCCAATTATCTCGATTCTTGTGAAAGATGTCATAATTTTGTCAACTGATAAAATATTAGTGATGTTCTGATTAATAATTCATCAATTGACTTATTTTTGAAATCTTTCATAAAAATTGAGATAATTGATTTCAAAGTTGAAGGGTTGGGTGGGCTCTAATTAGAGGAAATACGGTAATTCTTTTTGTTTTTACTTAAAAAAACGACAGAGATTTTTTTGATAATCATGCCCATTATTCCCATGTTTCTTTCTTTTTTGCTCTGTGCTTCTTTTCTTTTGCTTTCCACCTGATTCCCTTTTCATTTTTCTCTCACGTGTGTTTCCTTGTCAATCATTTTCAATCAACGAACTCAACCCCCACGGGCACCGAATCATCTTCATATTCTTTTTGACACATTGAGATATATACACAACAAAAAATACCTTTTTTCTCACCACATTTATCTTTCGTCTGTCATTTTTTTGTTCATCGATGAATTTGTTTTGAGCTAACATCAAAGATTAGTGGTCTTTTGGAAAAGAGATAGTCTGGGTTTGAAACAAAAAAACTCACCGATAGGCATCGGAGGTTTTTCGGAAGTCGGCGACAATGTGGATGTCGTTGTTGAAGTTCGACTGAATCTTGGACG</canonical>
            <polymorphic>GGGCCCCCTGTAATAGAGAAGGTCCCTCTTCAAAATGGATTGTTTAAAATTGAAAATTTCTGTACGTTATCAGTAAAAATATTTCAAAAATTCCAAAAATTTCTCAGAAATTGGTTGAAACACTTCTTTGTAGCTCAAAAATGGCTCAATTTTGGTGAAATCAATATATTTTCATAAATTTTGAACGCAAATTCGTCGAATTTTTCTATGAAAAACTTGAGGAACAATAGCTGGAAAAATAGAAGGGCCCTAGTAACAGAAGGGCCCTCCGGAAGTACTTTGGAACAAAAAAAAGGGCCGGCCCTTTTAATACAGGTTTTACGGTAGTTTCGCCTACCTAATAGAAGCTTACCCACACCGTCAACTTTGAGCCCAATTATCTCGATTCTTGTGAAAGATGTCATAATTTTGTCAACTGATAAAATATTAGTGATGTTCTGATTAATAATTCATCAATTGACTTATTTTTGAAATCTTTCATAAAAATTGAGATAATTGAWTTCAAAGTTGAAGGGTTGGGTGGGCTCTAATTAGAGGAAATACGGTAATTCTTTTTGTTTTTACTTAAAAAAACGACAGAGATTTTTTTGATAATCATGCCCATTATTCCCATGTTTCTTTCTTTTTTGCTCTGTGCTTCTTTTCTTTTGCTTTCCACCTGATTCCCTTTTCATTTTTCTCTCACGTGTGTTTCCTTGTCAATCATTTTCAATCAACGAACTCAACCCCCACGGGCACCGAATCATCTTCATATTCTTTTTGACACATTGAGATATATACACAACAAAAAATACCTTTTTTCTCACCACATTTATCTTTCGTCTGTCATTTTTTTGTTCATCGATGAATTTGTTTTGAGCTAACATCAAAGATTAGTGGTCTTTTGGAAAAGAGATAGTCTGGGTTTGAAACAAAAAAACTCACCGATAGGCATCGGAGGTTTTTCGGAAGTCGGCGACAATGTGGATGTCGTTGTTGAAGTTCGACTGAATCTTGGACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCTCTTCAAAATGGATTGTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGGGCATGATTATCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>580</pcr_amplicon_size>
		<canonical_amplicon>CCTCTTCAAAATGGATTGTTTAAAATTGAAAATTTCTGTACGTTATCAGTAAAAATATTTCAAAAATTCCAAAAATTTCTCAGAAATTGGTTGAAACACTTCTTTGTAGCTCAAAAATGGCTCAATTTTGGTGAAATCAATATATTTTCATAAATTTTGAACGCAAATTCGTCGAATTTTTCTATGAAAAACTTGAGGAACAATAGCTGGAAAAATAGAAGGGCCCTAGTAACAGAAGGGCCCTCCGGAAGTACTTTGGAACAAAAAAAAGGGCCGGCCCTTTTAATACAGGTTTTACGGTAGTTTCGCCTACCTAATAGAAGCTTACCCACACCGTCAACTTTGAGCCCAATTATCTCGATTCTTGTGAAAGATGTCATAATTTTGTCAACTGATAAAATATTAGTGATGTTCTGATTAATAATTCATCAATTGACTTATTTTTGAAATCTTTCATAAAAATTGAGATAATTGATTTCAAAGTTGAAGGGTTGGGTGGGCTCTAATTAGAGGAAATACGGTAATTCTTTTTGTTTTTACTTAAAAAAACGACAGAGATTTTTTTGATAATCATGCCCAT</canonical_amplicon>
		<polymorphic_amplicon>CCTCTTCAAAATGGATTGTTTAAAATTGAAAATTTCTGTACGTTATCAGTAAAAATATTTCAAAAATTCCAAAAATTTCTCAGAAATTGGTTGAAACACTTCTTTGTAGCTCAAAAATGGCTCAATTTTGGTGAAATCAATATATTTTCATAAATTTTGAACGCAAATTCGTCGAATTTTTCTATGAAAAACTTGAGGAACAATAGCTGGAAAAATAGAAGGGCCCTAGTAACAGAAGGGCCCTCCGGAAGTACTTTGGAACAAAAAAAAGGGCCGGCCCTTTTAATACAGGTTTTACGGTAGTTTCGCCTACCTAATAGAAGCTTACCCACACCGTCAACTTTGAGCCCAATTATCTCGATTCTTGTGAAAGATGTCATAATTTTGTCAACTGATAAAATATTAGTGATGTTCTGATTAATAATTCATCAATTGACTTATTTTTGAAATCTTTCATAAAAATTGAGATAATTGAWTTCAAAGTTGAAGGGTTGGGTGGGCTCTAATTAGAGGAAATACGGTAATTCTTTTTGTTTTTACTTAAAAAAACGACAGAGATTTTTTTGATAATCATGCCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39543</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>268526</contig_pos>
        <strand>+</strand>
        <context>AAAGAAGTCT[A/G]AAGGAAATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATATGAATTAATTGGAATTTGAAAAAGTGAAAAACAGAAAGAAGTCT</left_flank>
        <right_flank>AAGGAAATGAGAATGAAAACTGATTGGAGAAAAGAAGAGAGGAGGAAAGA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAACATTTTCGAGTCAATCGAAACGAAAAATTTCTGTCAAATAAGAATCTGATTTTTCCGGTATGGAAATAACTTGACTTTCGAATTCTGATAATTTTCTGTGTTCGGAAGTCAATTGAACGAATGCAACAAACACATTGGAATCCATCTCTAATAAATCTTCTTCCAACCTGAACAAAACAACTGACCTGCCGTAACCCACTGCTCGATTTCCTGATTTTAGGCGGCGCCTCGTCCAGATCGGATATCTTGGGTTCACTATCGGCTTGTTGGCTGAAACAATGAAGGATTTAGAATGATAGATGACATATTATTTCAAACTCAAAGATAGTCCCTTTAATTAGACTTACCTTGTTCTCCAGGTAACACTTGGGTGGGGATTCGATGTAGTGTCTGATGAGTTGGAAAGAAGAAGGACCGGATAATGGGATACCTAAAAAAAAAGAAAAATATGAATTAATTGGAATTTGAAAAAGTGAAAAACAGAAAGAAGTCTAAAGGAAATGAGAATGAAAACTGATTGGAGAAAAGAAGAGAGGAGGAAAGAAGCAGAGACCAAAGGTCCAATTAGTGAGAAAAAAGGGATAGGATCTTTGGGTCAATTCGAATGACTACATTATTCTGAATTTGAGAAAAAACTCCCGGCTTCAGATTTCTGTTTTTAACAGTACTATATTTTGTTCTAGAAAACAAAAACTTCTGGTAAAATTTTCTTCCGATTTGATCGAAATTCAGATCTGAATGGAAAAATAAAACAAGGCGTTCGCTGATTAAAAATAACATGTCAAGTTGTCATTTTGCATAAAAAACACTGAGCACGATATGGTCTAATGAATTCCAAAAAAAACAATTTTTTCATGTCAAAATATACATAAAGCCTAAAAATAAAGGGTTAGATGCATACTGGTCAGGGACCGGACCTGGAACATTGGGGTCAAAATGAAAAATTCGCAAAATTTCAGTTTCGATATTTTTGTAAAGGCGAAACATCTCAGGA</canonical>
            <polymorphic>CAAAAACATTTTCGAGTCAATCGAAACGAAAAATTTCTGTCAAATAAGAATCTGATTTTTCCGGTATGGAAATAACTTGACTTTCGAATTCTGATAATTTTCTGTGTTCGGAAGTCAATTGAACGAATGCAACAAACACATTGGAATCCATCTCTAATAAATCTTCTTCCAACCTGAACAAAACAACTGACCTGCCGTAACCCACTGCTCGATTTCCTGATTTTAGGCGGCGCCTCGTCCAGATCGGATATCTTGGGTTCACTATCGGCTTGTTGGCTGAAACAATGAAGGATTTAGAATGATAGATGACATATTATTTCAAACTCAAAGATAGTCCCTTTAATTAGACTTACCTTGTTCTCCAGGTAACACTTGGGTGGGGATTCGATGTAGTGTCTGATGAGTTGGAAAGAAGAAGGACCGGATAATGGGATACCTAAAAAAAAAGAAAAATATGAATTAATTGGAATTTGAAAAAGTGAAAAACAGAAAGAAGTCTRAAGGAAATGAGAATGAAAACTGATTGGAGAAAAGAAGAGAGGAGGAAAGAAGCAGAGACCAAAGGTCCAATTAGTGAGAAAAAAGGGATAGGATCTTTGGGTCAATTCGAATGACTACATTATTCTGAATTTGAGAAAAAACTCCCGGCTTCAGATTTCTGTTTTTAACAGTACTATATTTTGTTCTAGAAAACAAAAACTTCTGGTAAAATTTTCTTCCGATTTGATCGAAATTCAGATCTGAATGGAAAAATAAAACAAGGCGTTCGCTGATTAAAAATAACATGTCAAGTTGTCATTTTGCATAAAAAACACTGAGCACGATATGGTCTAATGAATTCCAAAAAAAACAATTTTTTCATGTCAAAATATACATAAAGCCTAAAAATAAAGGGTTAGATGCATACTGGTCAGGGACCGGACCTGGAACATTGGGGTCAAAATGAAAAATTCGCAAAATTTCAGTTTCGATATTTTTGTAAAGGCGAAACATCTCAGGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAGTGTCTGATGAGTTGGAAAG</pcr_primer_p1>
		<pcr_primer_p2>TCTCAAATTCAGAATAATGTAGTCA</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTAGTGTCTGATGAGTTGGAAAGAAGAAGGACCGGATAATGGGATACCTAAAAAAAAAGAAAAATATGAATTAATTGGAATTTGAAAAAGTGAAAAACAGAAAGAAGTCTAAAGGAAATGAGAATGAAAACTGATTGGAGAAAAGAAGAGAGGAGGAAAGAAGCAGAGACCAAAGGTCCAATTAGTGAGAAAAAAGGGATAGGATCTTTGGGTCAATTCGAATGACTACATTATTCTGAATTTGAGA</canonical_amplicon>
		<polymorphic_amplicon>GTAGTGTCTGATGAGTTGGAAAGAAGAAGGACCGGATAATGGGATACCTAAAAAAAAAGAAAAATATGAATTAATTGGAATTTGAAAAAGTGAAAAACAGAAAGAAGTCTRAAGGAAATGAGAATGAAAACTGATTGGAGAAAAGAAGAGAGGAGGAAAGAAGCAGAGACCAAAGGTCCAATTAGTGAGAAAAAAGGGATAGGATCTTTGGGTCAATTCGAATGACTACATTATTCTGAATTTGAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39544</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>268756</contig_pos>
        <strand>+</strand>
        <context>CGATTTGATC[A/G]AAATTCAGAT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTGTTCTAGAAAACAAAAACTTCTGGTAAAATTTTCTTCCGATTTGATC</left_flank>
        <right_flank>AAATTCAGATCTGAATGGAAAAATAAAACAAGGCGTTCGCTGATTAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGCCTCGTCCAGATCGGATATCTTGGGTTCACTATCGGCTTGTTGGCTGAAACAATGAAGGATTTAGAATGATAGATGACATATTATTTCAAACTCAAAGATAGTCCCTTTAATTAGACTTACCTTGTTCTCCAGGTAACACTTGGGTGGGGATTCGATGTAGTGTCTGATGAGTTGGAAAGAAGAAGGACCGGATAATGGGATACCTAAAAAAAAAGAAAAATATGAATTAATTGGAATTTGAAAAAGTGAAAAACAGAAAGAAGTCTAAAGGAAATGAGAATGAAAACTGATTGGAGAAAAGAAGAGAGGAGGAAAGAAGCAGAGACCAAAGGTCCAATTAGTGAGAAAAAAGGGATAGGATCTTTGGGTCAATTCGAATGACTACATTATTCTGAATTTGAGAAAAAACTCCCGGCTTCAGATTTCTGTTTTTAACAGTACTATATTTTGTTCTAGAAAACAAAAACTTCTGGTAAAATTTTCTTCCGATTTGATCGAAATTCAGATCTGAATGGAAAAATAAAACAAGGCGTTCGCTGATTAAAAATAACATGTCAAGTTGTCATTTTGCATAAAAAACACTGAGCACGATATGGTCTAATGAATTCCAAAAAAAACAATTTTTTCATGTCAAAATATACATAAAGCCTAAAAATAAAGGGTTAGATGCATACTGGTCAGGGACCGGACCTGGAACATTGGGGTCAAAATGAAAAATTCGCAAAATTTCAGTTTCGATATTTTTGTAAAGGCGAAACATCTCAGGAAATTGCTGGGCCGTAATAACTTTTCTAGGCCCTTGACCCGGCCCGGCCCGGAATTTGACGAGTATGATTATATGTTAATATAAGAAGCTTGAAGAATTCAAACAAAAAAAAATCAAAATATACCTGTAACGATGGATACTTCTTGCCAATCAATCCGCTTTTTCTTCGAACGATTGGATGGGATGGTCCACCATTTGTTTTTGGAATCTCATTGACGTCCCCTGCACTTG</canonical>
            <polymorphic>CGCCTCGTCCAGATCGGATATCTTGGGTTCACTATCGGCTTGTTGGCTGAAACAATGAAGGATTTAGAATGATAGATGACATATTATTTCAAACTCAAAGATAGTCCCTTTAATTAGACTTACCTTGTTCTCCAGGTAACACTTGGGTGGGGATTCGATGTAGTGTCTGATGAGTTGGAAAGAAGAAGGACCGGATAATGGGATACCTAAAAAAAAAGAAAAATATGAATTAATTGGAATTTGAAAAAGTGAAAAACAGAAAGAAGTCTAAAGGAAATGAGAATGAAAACTGATTGGAGAAAAGAAGAGAGGAGGAAAGAAGCAGAGACCAAAGGTCCAATTAGTGAGAAAAAAGGGATAGGATCTTTGGGTCAATTCGAATGACTACATTATTCTGAATTTGAGAAAAAACTCCCGGCTTCAGATTTCTGTTTTTAACAGTACTATATTTTGTTCTAGAAAACAAAAACTTCTGGTAAAATTTTCTTCCGATTTGATCRAAATTCAGATCTGAATGGAAAAATAAAACAAGGCGTTCGCTGATTAAAAATAACATGTCAAGTTGTCATTTTGCATAAAAAACACTGAGCACGATATGGTCTAATGAATTCCAAAAAAAACAATTTTTTCATGTCAAAATATACATAAAGCCTAAAAATAAAGGGTTAGATGCATACTGGTCAGGGACCGGACCTGGAACATTGGGGTCAAAATGAAAAATTCGCAAAATTTCAGTTTCGATATTTTTGTAAAGGCGAAACATCTCAGGAAATTGCTGGGCCGTAATAACTTTTCTAGGCCCTTGACCCGGCCCGGCCCGGAATTTGACGAGTATGATTATATGTTAATATAAGAAGCTTGAAGAATTCAAACAAAAAAAAATCAAAATATACCTGTAACGATGGATACTTCTTGCCAATCAATCCGCTTTTTCTTCGAACGATTGGATGGGATGGTCCACCATTTGTTTTTGGAATCTCATTGACGTCCCCTGCACTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>240 222 198 156 121 63</canonical_bands>
                <polymorphic_bands>361 222 198 156 63</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAGGTCCAATTAGTGAGAAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTATGCAAAATGACAACTTGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AAAGGTCCAATTAGTGAGAAAAAAGGGATAGGATCTTTGGGTCAATTCGAATGACTACATTATTCTGAATTTGAGAAAAAACTCCCGGCTTCAGATTTCTGTTTTTAACAGTACTATATTTTGTTCTAGAAAACAAAAACTTCTGGTAAAATTTTCTTCCGATTTGATCGAAATTCAGATCTGAATGGAAAAATAAAACAAGGCGTTCGCTGATTAAAAATAACATGTCAAGTTGTCATTTTGCATAAA</canonical_amplicon>
		<polymorphic_amplicon>AAAGGTCCAATTAGTGAGAAAAAAGGGATAGGATCTTTGGGTCAATTCGAATGACTACATTATTCTGAATTTGAGAAAAAACTCCCGGCTTCAGATTTCTGTTTTTAACAGTACTATATTTTGTTCTAGAAAACAAAAACTTCTGGTAAAATTTTCTTCCGATTTGATCRAAATTCAGATCTGAATGGAAAAATAAAACAAGGCGTTCGCTGATTAAAAATAACATGTCAAGTTGTCATTTTGCATAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39545</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>272625</contig_pos>
        <strand>+</strand>
        <context>TGCTTCTGGA[G/T]ACTTTAAAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCTGTTGCTTTGCTCCCAAGCTTGCATCTGAAAATCGTTGCTTCTGGA</left_flank>
        <right_flank>ACTTTAAAAAAAGTATATATCCATTTTTGTGTTGTTTTTTTTACGAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGGAAGTGTTTCATTGAGGCCCCTTGTGTCCAAAATAGAAACGCTTATTCATTTTAATTACAATAGAGTCACGTCTTCTTCATCTGAATCATTCATCAGTTTACACTGGTGAGAGTTGGGACGAAAAAAAAACGGAACCATATTTTGAGTTGACCAATAGAGGAAAATATGATTATGATGAGAAGAAGAGAAAAATAAATTCAATTACTTTTTCATGAATAAAGCTATATTTACATTTTATAATTAGCGAGGGCCGGAACCCCCCAAGAGATGGTCAATGGTCAGCTGGAAAAAAATGGGTGGATCTGAAAATTAAGGATAACAATTGGAAGATAATTAAATGAAGGAAATGAGATAAGATGAAACTATAGTTTATTAGAATAGTGTCGTCTAAAATCGTGTGAAAATTTGGCTTTGAATTTTGAAAAAGTTCTGTGGACCAAGAGATTTCTGTTGCTTTGCTCCCAAGCTTGCATCTGAAAATCGTTGCTTCTGGAGACTTTAAAAAAAGTATATATCCATTTTTGTGTTGTTTTTTTTACGAAAAAGCACGATCAGAGTTCAGTGGTGATCTCAGAAATCCTTTCTTTCTTTTTTTCCTTTCTTTTTTCATCCATTTTTTCAGTCAGAATTTCTATGAAAACACAAGTAACAAAACGGAAACTAGAAACGGAACACTGAAAAAAAACACGGAGACAAAAGATAAATTGAATCCCAAATCTTCTCTGAATCCCAATCTATACCAACGATTATCTTAAAGTACGTTCATCAATAAAACAATCATTGGAATTTGATAAATAGGTGGAGTAAAAATGTGAAAGATGTATTTTTCCAACAGCTGCTGTTTTTCGATAATCTCTCAGTGAGCAATCAATTGTTTTCAGTCTGTGTGTCCCTTCAAAAATCACTTCGTTGTCATTTTTTTAGTGGATCTTAATAACAGGTGTTCTTCTATTTTTTGATCACTTTTATTTAAAAAAAATGATAACTAAAATTGA</canonical>
            <polymorphic>TTCGGAAGTGTTTCATTGAGGCCCCTTGTGTCCAAAATAGAAACGCTTATTCATTTTAATTACAATAGAGTCACGTCTTCTTCATCTGAATCATTCATCAGTTTACACTGGTGAGAGTTGGGACGAAAAAAAAACGGAACCATATTTTGAGTTGACCAATAGAGGAAAATATGATTATGATGAGAAGAAGAGAAAAATAAATTCAATTACTTTTTCATGAATAAAGCTATATTTACATTTTATAATTAGCGAGGGCCGGAACCCCCCAAGAGATGGTCAATGGTCAGCTGGAAAAAAATGGGTGGATCTGAAAATTAAGGATAACAATTGGAAGATAATTAAATGAAGGAAATGAGATAAGATGAAACTATAGTTTATTAGAATAGTGTCGTCTAAAATCGTGTGAAAATTTGGCTTTGAATTTTGAAAAAGTTCTGTGGACCAAGAGATTTCTGTTGCTTTGCTCCCAAGCTTGCATCTGAAAATCGTTGCTTCTGGAKACTTTAAAAAAAGTATATATCCATTTTTGTGTTGTTTTTTTTACGAAAAAGCACGATCAGAGTTCAGTGGTGATCTCAGAAATCCTTTCTTTCTTTTTTTCCTTTCTTTTTTCATCCATTTTTTCAGTCAGAATTTCTATGAAAACACAAGTAACAAAACGGAAACTAGAAACGGAACACTGAAAAAAAACACGGAGACAAAAGATAAATTGAATCCCAAATCTTCTCTGAATCCCAATCTATACCAACGATTATCTTAAAGTACGTTCATCAATAAAACAATCATTGGAATTTGATAAATAGGTGGAGTAAAAATGTGAAAGATGTATTTTTCCAACAGCTGCTGTTTTTCGATAATCTCTCAGTGAGCAATCAATTGTTTTCAGTCTGTGTGTCCCTTCAAAAATCACTTCGTTGTCATTTTTTTAGTGGATCTTAATAACAGGTGTTCTTCTATTTTTTGATCACTTTTATTTAAAAAAAATGATAACTAAAATTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGAAAAAGTTCTGTGGAC</pcr_primer_p1>
		<pcr_primer_p2>TCTAGTTTCCGTTTTGTTACTTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGAAAAAGTTCTGTGGACCAAGAGATTTCTGTTGCTTTGCTCCCAAGCTTGCATCTGAAAATCGTTGCTTCTGGAGACTTTAAAAAAAGTATATATCCATTTTTGTGTTGTTTTTTTTACGAAAAAGCACGATCAGAGTTCAGTGGTGATCTCAGAAATCCTTTCTTTCTTTTTTTCCTTTCTTTTTTCATCCATTTTTTCAGTCAGAATTTCTATGAAAACACAAGTAACAAAACGGAAACTAGA</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGAAAAAGTTCTGTGGACCAAGAGATTTCTGTTGCTTTGCTCCCAAGCTTGCATCTGAAAATCGTTGCTTCTGGAKACTTTAAAAAAAGTATATATCCATTTTTGTGTTGTTTTTTTTACGAAAAAGCACGATCAGAGTTCAGTGGTGATCTCAGAAATCCTTTCTTTCTTTTTTTCCTTTCTTTTTTCATCCATTTTTTCAGTCAGAATTTCTATGAAAACACAAGTAACAAAACGGAAACTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39546</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>273102</contig_pos>
        <strand>+</strand>
        <context>ACTTTTATTT[A/T]AAAAAAATGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGTGGATCTTAATAACAGGTGTTCTTCTATTTTTTGATCACTTTTATTT</left_flank>
        <right_flank>AAAAAAATGATAACTAAAATTGATAATCGGAACCAAAAGATTAAAAAAAA</right_flank>
        <qual_score>142</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGAAAATCGTTGCTTCTGGAGACTTTAAAAAAAGTATATATCCATTTTTGTGTTGTTTTTTTTACGAAAAAGCACGATCAGAGTTCAGTGGTGATCTCAGAAATCCTTTCTTTCTTTTTTTCCTTTCTTTTTTCATCCATTTTTTCAGTCAGAATTTCTATGAAAACACAAGTAACAAAACGGAAACTAGAAACGGAACACTGAAAAAAAACACGGAGACAAAAGATAAATTGAATCCCAAATCTTCTCTGAATCCCAATCTATACCAACGATTATCTTAAAGTACGTTCATCAATAAAACAATCATTGGAATTTGATAAATAGGTGGAGTAAAAATGTGAAAGATGTATTTTTCCAACAGCTGCTGTTTTTCGATAATCTCTCAGTGAGCAATCAATTGTTTTCAGTCTGTGTGTCCCTTCAAAAATCACTTCGTTGTCATTTTTTTAGTGGATCTTAATAACAGGTGTTCTTCTATTTTTTGATCACTTTTATTTAAAAAAAATGATAACTAAAATTGATAATCGGAACCAAAAGATTAAAAAAAATAGAAGTAGCATAGAGAGGAGAAAGCGGTAAATACAAGTCTTCGCAGAATTGTTAGTTTCTCATTTTTGGTTCTGCGTTTTCAAATTTCAAGTGTTTTTCAGAGAATGGGAACAAATCAACCCGAGAGGGAGAGGAATTCTGCCGTGACGTTGTCGATGTTCTCTGAGTTATGTTTCTAAAGGAAAATGGCCGTTTTTCAGAATATTCGTTAATGATATTACCTATAGATTTAATTATAATTATTTATCTGTTCAATGTCTGTTTTTTAGGATTTCATAGTGCACAAGTTGAAGGGGCTCTCCGTCCAAAATTTTCATTGCATTAAAATGTTTCCAAAGTTATGTATTTTTCTAATGTTACTTCAAATTGTTCTTTTCATCCCAAATCCCCGACAATGGAAAAAACGGAAGTTAAAATGTTGCTAAGAAAGGTGGCTAATATTGACGAGG</canonical>
            <polymorphic>TCTGAAAATCGTTGCTTCTGGAGACTTTAAAAAAAGTATATATCCATTTTTGTGTTGTTTTTTTTACGAAAAAGCACGATCAGAGTTCAGTGGTGATCTCAGAAATCCTTTCTTTCTTTTTTTCCTTTCTTTTTTCATCCATTTTTTCAGTCAGAATTTCTATGAAAACACAAGTAACAAAACGGAAACTAGAAACGGAACACTGAAAAAAAACACGGAGACAAAAGATAAATTGAATCCCAAATCTTCTCTGAATCCCAATCTATACCAACGATTATCTTAAAGTACGTTCATCAATAAAACAATCATTGGAATTTGATAAATAGGTGGAGTAAAAATGTGAAAGATGTATTTTTCCAACAGCTGCTGTTTTTCGATAATCTCTCAGTGAGCAATCAATTGTTTTCAGTCTGTGTGTCCCTTCAAAAATCACTTCGTTGTCATTTTTTTAGTGGATCTTAATAACAGGTGTTCTTCTATTTTTTGATCACTTTTATTTWAAAAAAATGATAACTAAAATTGATAATCGGAACCAAAAGATTAAAAAAAATAGAAGTAGCATAGAGAGGAGAAAGCGGTAAATACAAGTCTTCGCAGAATTGTTAGTTTCTCATTTTTGGTTCTGCGTTTTCAAATTTCAAGTGTTTTTCAGAGAATGGGAACAAATCAACCCGAGAGGGAGAGGAATTCTGCCGTGACGTTGTCGATGTTCTCTGAGTTATGTTTCTAAAGGAAAATGGCCGTTTTTCAGAATATTCGTTAATGATATTACCTATAGATTTAATTATAATTATTTATCTGTTCAATGTCTGTTTTTTAGGATTTCATAGTGCACAAGTTGAAGGGGCTCTCCGTCCAAAATTTTCATTGCATTAAAATGTTTCCAAAGTTATGTATTTTTCTAATGTTACTTCAAATTGTTCTTTTCATCCCAAATCCCCGACAATGGAAAAAACGGAAGTTAAAATGTTGCTAAGAAAGGTGGCTAATATTGACGAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 471 28</canonical_bands>
                <polymorphic_bands>972 28</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>253 219 179 92 89 43 39 38 27 21</canonical_bands>
                <polymorphic_bands>253 219 179 92 89 82 38 27 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGGAGTAAAAATGTGAAAGATG</pcr_primer_p1>
		<pcr_primer_p2>GCTTTCTCCTCTCTATGCTACTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GTGGAGTAAAAATGTGAAAGATGTATTTTTCCAACAGCTGCTGTTTTTCGATAATCTCTCAGTGAGCAATCAATTGTTTTCAGTCTGTGTGTCCCTTCAAAAATCACTTCGTTGTCATTTTTTTAGTGGATCTTAATAACAGGTGTTCTTCTATTTTTTGATCACTTTTATTTAAAAAAAATGATAACTAAAATTGATAATCGGAACCAAAAGATTAAAAAAAATAGAAGTAGCATAGAGAGGAGAAAGC</canonical_amplicon>
		<polymorphic_amplicon>GTGGAGTAAAAATGTGAAAGATGTATTTTTCCAACAGCTGCTGTTTTTCGATAATCTCTCAGTGAGCAATCAATTGTTTTCAGTCTGTGTGTCCCTTCAAAAATCACTTCGTTGTCATTTTTTTAGTGGATCTTAATAACAGGTGTTCTTCTATTTTTTGATCACTTTTATTTWAAAAAAATGATAACTAAAATTGATAATCGGAACCAAAAGATTAAAAAAAATAGAAGTAGCATAGAGAGGAGAAAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39547</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>273143</contig_pos>
        <strand></strand>
        <context>AACCAAAAGA[T/G]TAAAAAAAAK</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CTTTTATTTAAAAAAAATGATAACTAAAATTGATAATCGGAACCAAAAGA</left_flank>
        <right_flank>TAAAAAAAATAGAAGTAGCATAGAGAGGAGAAAGCGGTAAATACAAGTCT</right_flank>
        <qual_score>49</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATCCATTTTTGTGTTGTTTTTTTTACGAAAAAGCACGATCAGAGTTCAGTGGTGATCTCAGAAATCCTTTCTTTCTTTTTTTCCTTTCTTTTTTCATCCATTTTTTCAGTCAGAATTTCTATGAAAACACAAGTAACAAAACGGAAACTAGAAACGGAACACTGAAAAAAAACACGGAGACAAAAGATAAATTGAATCCCAAATCTTCTCTGAATCCCAATCTATACCAACGATTATCTTAAAGTACGTTCATCAATAAAACAATCATTGGAATTTGATAAATAGGTGGAGTAAAAATGTGAAAGATGTATTTTTCCAACAGCTGCTGTTTTTCGATAATCTCTCAGTGAGCAATCAATTGTTTTCAGTCTGTGTGTCCCTTCAAAAATCACTTCGTTGTCATTTTTTTAGTGGATCTTAATAACAGGTGTTCTTCTATTTTTTGATCACTTTTATTTAAAAAAAATGATAACTAAAATTGATAATCGGAACCAAAAGATTAAAAAAAATAGAAGTAGCATAGAGAGGAGAAAGCGGTAAATACAAGTCTTCGCAGAATTGTTAGTTTCTCATTTTTGGTTCTGCGTTTTCAAATTTCAAGTGTTTTTCAGAGAATGGGAACAAATCAACCCGAGAGGGAGAGGAATTCTGCCGTGACGTTGTCGATGTTCTCTGAGTTATGTTTCTAAAGGAAAATGGCCGTTTTTCAGAATATTCGTTAATGATATTACCTATAGATTTAATTATAATTATTTATCTGTTCAATGTCTGTTTTTTAGGATTTCATAGTGCACAAGTTGAAGGGGCTCTCCGTCCAAAATTTTCATTGCATTAAAATGTTTCCAAAGTTATGTATTTTTCTAATGTTACTTCAAATTGTTCTTTTCATCCCAAATCCCCGACAATGGAAAAAACGGAAGTTAAAATGTTGCTAAGAAAGGTGGCTAATATTGACGAGGATTTGAATTCCCGCTCAATAAGAAACCTAGGCCACGGCTAA</canonical>
            <polymorphic>ATCCATTTTTGTGTTGTTTTTTTTACGAAAAAGCACGATCAGAGTTCAGTGGTGATCTCAGAAATCCTTTCTTTCTTTTTTTCCTTTCTTTTTTCATCCATTTTTTCAGTCAGAATTTCTATGAAAACACAAGTAACAAAACGGAAACTAGAAACGGAACACTGAAAAAAAACACGGAGACAAAAGATAAATTGAATCCCAAATCTTCTCTGAATCCCAATCTATACCAACGATTATCTTAAAGTACGTTCATCAATAAAACAATCATTGGAATTTGATAAATAGGTGGAGTAAAAATGTGAAAGATGTATTTTTCCAACAGCTGCTGTTTTTCGATAATCTCTCAGTGAGCAATCAATTGTTTTCAGTCTGTGTGTCCCTTCAAAAATCACTTCGTTGTCATTTTTTTAGTGGATCTTAATAACAGGTGTTCTTCTATTTTTTGATCACTTTTATTTAAAAAAAATGATAACTAAAATTGATAATCGGAACCAAAAGAKTAAAAAAAATAGAAGTAGCATAGAGAGGAGAAAGCGGTAAATACAAGTCTTCGCAGAATTGTTAGTTTCTCATTTTTGGTTCTGCGTTTTCAAATTTCAAGTGTTTTTCAGAGAATGGGAACAAATCAACCCGAGAGGGAGAGGAATTCTGCCGTGACGTTGTCGATGTTCTCTGAGTTATGTTTCTAAAGGAAAATGGCCGTTTTTCAGAATATTCGTTAATGATATTACCTATAGATTTAATTATAATTATTTATCTGTTCAATGTCTGTTTTTTAGGATTTCATAGTGCACAAGTTGAAGGGGCTCTCCGTCCAAAATTTTCATTGCATTAAAATGTTTCCAAAGTTATGTATTTTTCTAATGTTACTTCAAATTGTTCTTTTCATCCCAAATCCCCGACAATGGAAAAAACGGAAGTTAAAATGTTGCTAAGAAAGGTGGCTAATATTGACGAGGATTTGAATTCCCGCTCAATAAGAAACCTAGGCCACGGCTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>239 219 179 92 89 79 43 39 21</canonical_bands>
                <polymorphic_bands>262 239 179 92 89 79 39 21</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAATCTCTCAGTGAGCAATCAAT</pcr_primer_p1>
		<pcr_primer_p2>CAGAACCAAAAATGAGAAACTAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TAATCTCTCAGTGAGCAATCAATTGTTTTCAGTCTGTGTGTCCCTTCAAAAATCACTTCGTTGTCATTTTTTTAGTGGATCTTAATAACAGGTGTTCTTCTATTTTTTGATCACTTTTATTTAAAAAAAATGATAACTAAAATTGATAATCGGAACCAAAAGATTAAAAAAAATAGAAGTAGCATAGAGAGGAGAAAGCGGTAAATACAAGTCTTCGCAGAATTGTTAGTTTCTCATTTTTGGTTCTG</canonical_amplicon>
		<polymorphic_amplicon>TAATCTCTCAGTGAGCAATCAATTGTTTTCAGTCTGTGTGTCCCTTCAAAAATCACTTCGTTGTCATTTTTTTAGTGGATCTTAATAACAGGTGTTCTTCTATTTTTTGATCACTTTTATTTAAAAAAAATGATAACTAAAATTGATAATCGGAACCAAAAGAKTAAAAAAAATAGAAGTAGCATAGAGAGGAGAAAGCGGTAAATACAAGTCTTCGCAGAATTGTTAGTTTCTCATTTTTGGTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39548</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>273153</contig_pos>
        <strand>+</strand>
        <context>KTAAAAAAAA[G/T]AGAAGTAGCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAAAATGATAACTAAAATTGATAATCGGAACCAAAAGATTAAAAAAAA</left_flank>
        <right_flank>AGAAGTAGCATAGAGAGGAGAAAGCGGTAAATACAAGTCTTCGCAGAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTTGTTTTTTTTACGAAAAAGCACGATCAGAGTTCAGTGGTGATCTCAGAAATCCTTTCTTTCTTTTTTTCCTTTCTTTTTTCATCCATTTTTTCAGTCAGAATTTCTATGAAAACACAAGTAACAAAACGGAAACTAGAAACGGAACACTGAAAAAAAACACGGAGACAAAAGATAAATTGAATCCCAAATCTTCTCTGAATCCCAATCTATACCAACGATTATCTTAAAGTACGTTCATCAATAAAACAATCATTGGAATTTGATAAATAGGTGGAGTAAAAATGTGAAAGATGTATTTTTCCAACAGCTGCTGTTTTTCGATAATCTCTCAGTGAGCAATCAATTGTTTTCAGTCTGTGTGTCCCTTCAAAAATCACTTCGTTGTCATTTTTTTAGTGGATCTTAATAACAGGTGTTCTTCTATTTTTTGATCACTTTTATTTAAAAAAAATGATAACTAAAATTGATAATCGGAACCAAAAGATTAAAAAAAATAGAAGTAGCATAGAGAGGAGAAAGCGGTAAATACAAGTCTTCGCAGAATTGTTAGTTTCTCATTTTTGGTTCTGCGTTTTCAAATTTCAAGTGTTTTTCAGAGAATGGGAACAAATCAACCCGAGAGGGAGAGGAATTCTGCCGTGACGTTGTCGATGTTCTCTGAGTTATGTTTCTAAAGGAAAATGGCCGTTTTTCAGAATATTCGTTAATGATATTACCTATAGATTTAATTATAATTATTTATCTGTTCAATGTCTGTTTTTTAGGATTTCATAGTGCACAAGTTGAAGGGGCTCTCCGTCCAAAATTTTCATTGCATTAAAATGTTTCCAAAGTTATGTATTTTTCTAATGTTACTTCAAATTGTTCTTTTCATCCCAAATCCCCGACAATGGAAAAAACGGAAGTTAAAATGTTGCTAAGAAAGGTGGCTAATATTGACGAGGATTTGAATTCCCGCTCAATAAGAAACCTAGGCCACGGCTAAGGACATCCTT</canonical>
            <polymorphic>GTGTTGTTTTTTTTACGAAAAAGCACGATCAGAGTTCAGTGGTGATCTCAGAAATCCTTTCTTTCTTTTTTTCCTTTCTTTTTTCATCCATTTTTTCAGTCAGAATTTCTATGAAAACACAAGTAACAAAACGGAAACTAGAAACGGAACACTGAAAAAAAACACGGAGACAAAAGATAAATTGAATCCCAAATCTTCTCTGAATCCCAATCTATACCAACGATTATCTTAAAGTACGTTCATCAATAAAACAATCATTGGAATTTGATAAATAGGTGGAGTAAAAATGTGAAAGATGTATTTTTCCAACAGCTGCTGTTTTTCGATAATCTCTCAGTGAGCAATCAATTGTTTTCAGTCTGTGTGTCCCTTCAAAAATCACTTCGTTGTCATTTTTTTAGTGGATCTTAATAACAGGTGTTCTTCTATTTTTTGATCACTTTTATTTAAAAAAAATGATAACTAAAATTGATAATCGGAACCAAAAGATTAAAAAAAAKAGAAGTAGCATAGAGAGGAGAAAGCGGTAAATACAAGTCTTCGCAGAATTGTTAGTTTCTCATTTTTGGTTCTGCGTTTTCAAATTTCAAGTGTTTTTCAGAGAATGGGAACAAATCAACCCGAGAGGGAGAGGAATTCTGCCGTGACGTTGTCGATGTTCTCTGAGTTATGTTTCTAAAGGAAAATGGCCGTTTTTCAGAATATTCGTTAATGATATTACCTATAGATTTAATTATAATTATTTATCTGTTCAATGTCTGTTTTTTAGGATTTCATAGTGCACAAGTTGAAGGGGCTCTCCGTCCAAAATTTTCATTGCATTAAAATGTTTCCAAAGTTATGTATTTTTCTAATGTTACTTCAAATTGTTCTTTTCATCCCAAATCCCCGACAATGGAAAAAACGGAAGTTAAAATGTTGCTAAGAAAGGTGGCTAATATTGACGAGGATTTGAATTCCCGCTCAATAAGAAACCTAGGCCACGGCTAAGGACATCCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAATCTCTCAGTGAGCAATCAAT</pcr_primer_p1>
		<pcr_primer_p2>CAGAACCAAAAATGAGAAACTAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TAATCTCTCAGTGAGCAATCAATTGTTTTCAGTCTGTGTGTCCCTTCAAAAATCACTTCGTTGTCATTTTTTTAGTGGATCTTAATAACAGGTGTTCTTCTATTTTTTGATCACTTTTATTTAAAAAAAATGATAACTAAAATTGATAATCGGAACCAAAAGATTAAAAAAAATAGAAGTAGCATAGAGAGGAGAAAGCGGTAAATACAAGTCTTCGCAGAATTGTTAGTTTCTCATTTTTGGTTCTG</canonical_amplicon>
		<polymorphic_amplicon>TAATCTCTCAGTGAGCAATCAATTGTTTTCAGTCTGTGTGTCCCTTCAAAAATCACTTCGTTGTCATTTTTTTAGTGGATCTTAATAACAGGTGTTCTTCTATTTTTTGATCACTTTTATTTAAAAAAAATGATAACTAAAATTGATAATCGGAACCAAAAGATTAAAAAAAAKAGAAGTAGCATAGAGAGGAGAAAGCGGTAAATACAAGTCTTCGCAGAATTGTTAGTTTCTCATTTTTGGTTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39549</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>273440</contig_pos>
        <strand>+</strand>
        <context>TAGTGCACAA[A/G]TTGAAGGGGC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATTATTTATCTGTTCAATGTCTGTTTTTTAGGATTTCATAGTGCACAA</left_flank>
        <right_flank>TTGAAGGGGCTCTCCGTCCAAAATTTTCATTGCATTAAAATGTTTCCAAA</right_flank>
        <qual_score>138</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGAAAGATGTATTTTTCCAACAGCTGCTGTTTTTCGATAATCTCTCAGTGAGCAATCAATTGTTTTCAGTCTGTGTGTCCCTTCAAAAATCACTTCGTTGTCATTTTTTTAGTGGATCTTAATAACAGGTGTTCTTCTATTTTTTGATCACTTTTATTTAAAAAAAATGATAACTAAAATTGATAATCGGAACCAAAAGATTAAAAAAAATAGAAGTAGCATAGAGAGGAGAAAGCGGTAAATACAAGTCTTCGCAGAATTGTTAGTTTCTCATTTTTGGTTCTGCGTTTTCAAATTTCAAGTGTTTTTCAGAGAATGGGAACAAATCAACCCGAGAGGGAGAGGAATTCTGCCGTGACGTTGTCGATGTTCTCTGAGTTATGTTTCTAAAGGAAAATGGCCGTTTTTCAGAATATTCGTTAATGATATTACCTATAGATTTAATTATAATTATTTATCTGTTCAATGTCTGTTTTTTAGGATTTCATAGTGCACAAGTTGAAGGGGCTCTCCGTCCAAAATTTTCATTGCATTAAAATGTTTCCAAAGTTATGTATTTTTCTAATGTTACTTCAAATTGTTCTTTTCATCCCAAATCCCCGACAATGGAAAAAACGGAAGTTAAAATGTTGCTAAGAAAGGTGGCTAATATTGACGAGGATTTGAATTCCCGCTCAATAAGAAACCTAGGCCACGGCTAAGGACATCCTTCTTTAAGTGGCTGTGTTTCGGGAATCTGGATTCAAAAAAAACTGTTCGTAATAGTATTAGGAAAATACATAACTTTTCAGACATTTCAATGCAGTGAAAAAAATTGGTCGGAATCCTCCAATAGTTAATTGATGCCCTATTTTTCTTTAATGATTTTTATTTTTCGTACCGTTGAGTTGAAATTGTTTATCTAAACGAAGCTGCAAACCATTTAGAGACAAAATTTCGATTCAGAAGTGCAAAAATACAACTTGCTGAAAAATTTTGTACCCCCATTTTTTGTAAAT</canonical>
            <polymorphic>TGTGAAAGATGTATTTTTCCAACAGCTGCTGTTTTTCGATAATCTCTCAGTGAGCAATCAATTGTTTTCAGTCTGTGTGTCCCTTCAAAAATCACTTCGTTGTCATTTTTTTAGTGGATCTTAATAACAGGTGTTCTTCTATTTTTTGATCACTTTTATTTAAAAAAAATGATAACTAAAATTGATAATCGGAACCAAAAGATTAAAAAAAATAGAAGTAGCATAGAGAGGAGAAAGCGGTAAATACAAGTCTTCGCAGAATTGTTAGTTTCTCATTTTTGGTTCTGCGTTTTCAAATTTCAAGTGTTTTTCAGAGAATGGGAACAAATCAACCCGAGAGGGAGAGGAATTCTGCCGTGACGTTGTCGATGTTCTCTGAGTTATGTTTCTAAAGGAAAATGGCCGTTTTTCAGAATATTCGTTAATGATATTACCTATAGATTTAATTATAATTATTTATCTGTTCAATGTCTGTTTTTTAGGATTTCATAGTGCACAARTTGAAGGGGCTCTCCGTCCAAAATTTTCATTGCATTAAAATGTTTCCAAAGTTATGTATTTTTCTAATGTTACTTCAAATTGTTCTTTTCATCCCAAATCCCCGACAATGGAAAAAACGGAAGTTAAAATGTTGCTAAGAAAGGTGGCTAATATTGACGAGGATTTGAATTCCCGCTCAATAAGAAACCTAGGCCACGGCTAAGGACATCCTTCTTTAAGTGGCTGTGTTTCGGGAATCTGGATTCAAAAAAAACTGTTCGTAATAGTATTAGGAAAATACATAACTTTTCAGACATTTCAATGCAGTGAAAAAAATTGGTCGGAATCCTCCAATAGTTAATTGATGCCCTATTTTTCTTTAATGATTTTTATTTTTCGTACCGTTGAGTTGAAATTGTTTATCTAAACGAAGCTGCAAACCATTTAGAGACAAAATTTCGATTCAGAAGTGCAAAAATACAACTTGCTGAAAAATTTTGTACCCCCATTTTTTGTAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGTCGATGTTCTCTGAGTTAT</pcr_primer_p1>
		<pcr_primer_p2>ATTTGGGATGAAAAGAACAAT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>GTTGTCGATGTTCTCTGAGTTATGTTTCTAAAGGAAAATGGCCGTTTTTCAGAATATTCGTTAATGATATTACCTATAGATTTAATTATAATTATTTATCTGTTCAATGTCTGTTTTTTAGGATTTCATAGTGCACAAGTTGAAGGGGCTCTCCGTCCAAAATTTTCATTGCATTAAAATGTTTCCAAAGTTATGTATTTTTCTAATGTTACTTCAAATTGTTCTTTTCATCCCAAAT</canonical_amplicon>
		<polymorphic_amplicon>GTTGTCGATGTTCTCTGAGTTATGTTTCTAAAGGAAAATGGCCGTTTTTCAGAATATTCGTTAATGATATTACCTATAGATTTAATTATAATTATTTATCTGTTCAATGTCTGTTTTTTAGGATTTCATAGTGCACAARTTGAAGGGGCTCTCCGTCCAAAATTTTCATTGCATTAAAATGTTTCCAAAGTTATGTATTTTTCTAATGTTACTTCAAATTGTTCTTTTCATCCCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39550</snp_id>
        <super_contig>c013901086.Contig1</super_contig>
        <contig_pos>273502</contig_pos>
        <strand>+</strand>
        <context>TTATGTATTT[A/T]TCTAATGTTA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTCCGTCCAAAATTTTCATTGCATTAAAATGTTTCCAAAGTTATGTATTT</left_flank>
        <right_flank>TCTAATGTTACTTCAAATTGTTCTTTTCATCCCAAATCCCCGACAATGGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTTCAGTCTGTGTGTCCCTTCAAAAATCACTTCGTTGTCATTTTTTTAGTGGATCTTAATAACAGGTGTTCTTCTATTTTTTGATCACTTTTATTTAAAAAAAATGATAACTAAAATTGATAATCGGAACCAAAAGATTAAAAAAAATAGAAGTAGCATAGAGAGGAGAAAGCGGTAAATACAAGTCTTCGCAGAATTGTTAGTTTCTCATTTTTGGTTCTGCGTTTTCAAATTTCAAGTGTTTTTCAGAGAATGGGAACAAATCAACCCGAGAGGGAGAGGAATTCTGCCGTGACGTTGTCGATGTTCTCTGAGTTATGTTTCTAAAGGAAAATGGCCGTTTTTCAGAATATTCGTTAATGATATTACCTATAGATTTAATTATAATTATTTATCTGTTCAATGTCTGTTTTTTAGGATTTCATAGTGCACAAGTTGAAGGGGCTCTCCGTCCAAAATTTTCATTGCATTAAAATGTTTCCAAAGTTATGTATTTTTCTAATGTTACTTCAAATTGTTCTTTTCATCCCAAATCCCCGACAATGGAAAAAACGGAAGTTAAAATGTTGCTAAGAAAGGTGGCTAATATTGACGAGGATTTGAATTCCCGCTCAATAAGAAACCTAGGCCACGGCTAAGGACATCCTTCTTTAAGTGGCTGTGTTTCGGGAATCTGGATTCAAAAAAAACTGTTCGTAATAGTATTAGGAAAATACATAACTTTTCAGACATTTCAATGCAGTGAAAAAAATTGGTCGGAATCCTCCAATAGTTAATTGATGCCCTATTTTTCTTTAATGATTTTTATTTTTCGTACCGTTGAGTTGAAATTGTTTATCTAAACGAAGCTGCAAACCATTTAGAGACAAAATTTCGATTCAGAAGTGCAAAAATACAACTTGCTGAAAAATTTTGTACCCCCATTTTTTGTAAATCATGGATTTTGTACCCCTAAATCAGTTGTACCCCCTTGTACCCCCGAATCGGTGGGCGGTCG</canonical>
            <polymorphic>TGTTTTCAGTCTGTGTGTCCCTTCAAAAATCACTTCGTTGTCATTTTTTTAGTGGATCTTAATAACAGGTGTTCTTCTATTTTTTGATCACTTTTATTTAAAAAAAATGATAACTAAAATTGATAATCGGAACCAAAAGATTAAAAAAAATAGAAGTAGCATAGAGAGGAGAAAGCGGTAAATACAAGTCTTCGCAGAATTGTTAGTTTCTCATTTTTGGTTCTGCGTTTTCAAATTTCAAGTGTTTTTCAGAGAATGGGAACAAATCAACCCGAGAGGGAGAGGAATTCTGCCGTGACGTTGTCGATGTTCTCTGAGTTATGTTTCTAAAGGAAAATGGCCGTTTTTCAGAATATTCGTTAATGATATTACCTATAGATTTAATTATAATTATTTATCTGTTCAATGTCTGTTTTTTAGGATTTCATAGTGCACAAGTTGAAGGGGCTCTCCGTCCAAAATTTTCATTGCATTAAAATGTTTCCAAAGTTATGTATTTWTCTAATGTTACTTCAAATTGTTCTTTTCATCCCAAATCCCCGACAATGGAAAAAACGGAAGTTAAAATGTTGCTAAGAAAGGTGGCTAATATTGACGAGGATTTGAATTCCCGCTCAATAAGAAACCTAGGCCACGGCTAAGGACATCCTTCTTTAAGTGGCTGTGTTTCGGGAATCTGGATTCAAAAAAAACTGTTCGTAATAGTATTAGGAAAATACATAACTTTTCAGACATTTCAATGCAGTGAAAAAAATTGGTCGGAATCCTCCAATAGTTAATTGATGCCCTATTTTTCTTTAATGATTTTTATTTTTCGTACCGTTGAGTTGAAATTGTTTATCTAAACGAAGCTGCAAACCATTTAGAGACAAAATTTCGATTCAGAAGTGCAAAAATACAACTTGCTGAAAAATTTTGTACCCCCATTTTTTGTAAATCATGGATTTTGTACCCCTAAATCAGTTGTACCCCCTTGTACCCCCGAATCGGTGGGCGGTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTATCTGTTCAATGTCTGTTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTGGCCTAGGTTTCTTATTGA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>TTTATCTGTTCAATGTCTGTTTTTTAGGATTTCATAGTGCACAAGTTGAAGGGGCTCTCCGTCCAAAATTTTCATTGCATTAAAATGTTTCCAAAGTTATGTATTTTTCTAATGTTACTTCAAATTGTTCTTTTCATCCCAAATCCCCGACAATGGAAAAAACGGAAGTTAAAATGTTGCTAAGAAAGGTGGCTAATATTGACGAGGATTTGAATTCCCGCTCAATAAGAAACCTAGGCCAC</canonical_amplicon>
		<polymorphic_amplicon>TTTATCTGTTCAATGTCTGTTTTTTAGGATTTCATAGTGCACAAGTTGAAGGGGCTCTCCGTCCAAAATTTTCATTGCATTAAAATGTTTCCAAAGTTATGTATTTWTCTAATGTTACTTCAAATTGTTCTTTTCATCCCAAATCCCCGACAATGGAAAAAACGGAAGTTAAAATGTTGCTAAGAAAGGTGGCTAATATTGACGAGGATTTGAATTCCCGCTCAATAAGAAACCTAGGCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39551</snp_id>
        <super_contig>c013901104.Contig1</super_contig>
        <contig_pos>3790</contig_pos>
        <strand>+</strand>
        <context>TTTCTTTCCC[C/T]CCCCCCGCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCTTTTTTGACCACTCCCCAGTCTCTAATGAAATCATTTTTCTTTCCC</left_flank>
        <right_flank>CCCCCCGCAATACTACTCCATTCTTATACATTTTTCCCATTTATACATAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCATAACTCGGCTCAAAATTGTCCTAGAAAGCTGATTGTTGGTGCGTTTTGTGGAAAATTTCATGAGTTTTCTTAAAATATAAAAATACAGTAATATAGTGCCCAGCTGAGATACGCGTTCCAGGCAAGTACAGTCAAGATTGGTATCAATTTGTAGATCATCTTAAGTTCTATATTATACTTATTAGTTTTAGCAGAAATTCCAAGTATGAACCGAACCTTGTAAGAGATATCAAAAAGAGGTCAACTGATAAAAATTAGCTGATAAAGTAATAAATATTTTATCAGTTGACAACTTTTTGATATCTTTCACAGGAACCGAGATCAATTGACTCGGAATTTGATTAGACCAAAAATGAACTTGCCCTCTTCCTCAACCTACAGACATATGGAATTTTTCCTCGAATTTCCCCTGGTTTCCTAATCAAATGCTGAAATTTGATCATATTTTCTTTTTTGACCACTCCCCAGTCTCTAATGAAATCATTTTTCTTTCCCTCCCCCCGCAATACTACTCCATTCTTATACATTTTTCCCATTTATACATAATTTTTTGATCATTTCCCTAATTTTTTATTATTTTTTGATCATTTTCCTCTGGTTCTCTGAAATCATTATCTTGATTTTTCTAGTTCATTTGATCATTTTTCTGATTTTTTCCCGATTTTTTGGAAAACAAACAATTTGGAATAATTGTTTAATGTCTGATCTTATCAAAATTGTTTTGAGAGCCAAAAAAATCAAAGACAATTGAATTTTTAGGAGGCTCTGATGGGTTTTTGAAAACTTCTGAATTCCTGAATTTTTGAATTTCTGAATTTCTGAAACTGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTGATGCTGAGAGTGCGCTTGATATGAATACTATGTTGAAATTTCAGAAAATTGAGTTTTGAACATGGAATTTTTGAATTTTCAAAAATTTCGCGTTGGGAAAACATTACAAATTCAATTTTTGCAGCAATTTTTTAGAA</canonical>
            <polymorphic>GTCATAACTCGGCTCAAAATTGTCCTAGAAAGCTGATTGTTGGTGCGTTTTGTGGAAAATTTCATGAGTTTTCTTAAAATATAAAAATACAGTAATATAGTGCCCAGCTGAGATACGCGTTCCAGGCAAGTACAGTCAAGATTGGTATCAATTTGTAGATCATCTTAAGTTCTATATTATACTTATTAGTTTTAGCAGAAATTCCAAGTATGAACCGAACCTTGTAAGAGATATCAAAAAGAGGTCAACTGATAAAAATTAGCTGATAAAGTAATAAATATTTTATCAGTTGACAACTTTTTGATATCTTTCACAGGAACCGAGATCAATTGACTCGGAATTTGATTAGACCAAAAATGAACTTGCCCTCTTCCTCAACCTACAGACATATGGAATTTTTCCTCGAATTTCCCCTGGTTTCCTAATCAAATGCTGAAATTTGATCATATTTTCTTTTTTGACCACTCCCCAGTCTCTAATGAAATCATTTTTCTTTCCCYCCCCCCGCAATACTACTCCATTCTTATACATTTTTCCCATTTATACATAATTTTTTGATCATTTCCCTAATTTTTTATTATTTTTTGATCATTTTCCTCTGGTTCTCTGAAATCATTATCTTGATTTTTCTAGTTCATTTGATCATTTTTCTGATTTTTTCCCGATTTTTTGGAAAACAAACAATTTGGAATAATTGTTTAATGTCTGATCTTATCAAAATTGTTTTGAGAGCCAAAAAAATCAAAGACAATTGAATTTTTAGGAGGCTCTGATGGGTTTTTGAAAACTTCTGAATTCCTGAATTTTTGAATTTCTGAATTTCTGAAACTGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTGATGCTGAGAGTGCGCTTGATATGAATACTATGTTGAAATTTCAGAAAATTGAGTTTTGAACATGGAATTTTTGAATTTTCAAAAATTTCGCGTTGGGAAAACATTACAAATTCAATTTTTGCAGCAATTTTTTAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACCTACAGACATATGGAATTT</pcr_primer_p1>
		<pcr_primer_p2>CAAGATAATGATTTCAGAGAACC</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CAACCTACAGACATATGGAATTTTTCCTCGAATTTCCCCTGGTTTCCTAATCAAATGCTGAAATTTGATCATATTTTCTTTTTTGACCACTCCCCAGTCTCTAATGAAATCATTTTTCTTTCCCTCCCCCCGCAATACTACTCCATTCTTATACATTTTTCCCATTTATACATAATTTTTTGATCATTTCCCTAATTTTTTATTATTTTTTGATCATTTTCCTCTGGTTCTCTGAAATCATTATCTTG</canonical_amplicon>
		<polymorphic_amplicon>CAACCTACAGACATATGGAATTTTTCCTCGAATTTCCCCTGGTTTCCTAATCAAATGCTGAAATTTGATCATATTTTCTTTTTTGACCACTCCCCAGTCTCTAATGAAATCATTTTTCTTTCCCYCCCCCCGCAATACTACTCCATTCTTATACATTTTTCCCATTTATACATAATTTTTTGATCATTTCCCTAATTTTTTATTATTTTTTGATCATTTTCCTCTGGTTCTCTGAAATCATTATCTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39552</snp_id>
        <super_contig>c013901104.Contig1</super_contig>
        <contig_pos>3885</contig_pos>
        <strand>+</strand>
        <context>TTGATCATTT[A/G]CCTCTGGTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATAATTTTTTGATCATTTCCCTAATTTTTTATTATTTTTTGATCATTT</left_flank>
        <right_flank>CCTCTGGTTCTCTGAAATCATTATCTTGATTTTTCTAGTTCATTTGATCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAGTGCCCAGCTGAGATACGCGTTCCAGGCAAGTACAGTCAAGATTGGTATCAATTTGTAGATCATCTTAAGTTCTATATTATACTTATTAGTTTTAGCAGAAATTCCAAGTATGAACCGAACCTTGTAAGAGATATCAAAAAGAGGTCAACTGATAAAAATTAGCTGATAAAGTAATAAATATTTTATCAGTTGACAACTTTTTGATATCTTTCACAGGAACCGAGATCAATTGACTCGGAATTTGATTAGACCAAAAATGAACTTGCCCTCTTCCTCAACCTACAGACATATGGAATTTTTCCTCGAATTTCCCCTGGTTTCCTAATCAAATGCTGAAATTTGATCATATTTTCTTTTTTGACCACTCCCCAGTCTCTAATGAAATCATTTTTCTTTCCCTCCCCCCGCAATACTACTCCATTCTTATACATTTTTCCCATTTATACATAATTTTTTGATCATTTCCCTAATTTTTTATTATTTTTTGATCATTTTCCTCTGGTTCTCTGAAATCATTATCTTGATTTTTCTAGTTCATTTGATCATTTTTCTGATTTTTTCCCGATTTTTTGGAAAACAAACAATTTGGAATAATTGTTTAATGTCTGATCTTATCAAAATTGTTTTGAGAGCCAAAAAAATCAAAGACAATTGAATTTTTAGGAGGCTCTGATGGGTTTTTGAAAACTTCTGAATTCCTGAATTTTTGAATTTCTGAATTTCTGAAACTGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTGATGCTGAGAGTGCGCTTGATATGAATACTATGTTGAAATTTCAGAAAATTGAGTTTTGAACATGGAATTTTTGAATTTTCAAAAATTTCGCGTTGGGAAAACATTACAAATTCAATTTTTGCAGCAATTTTTTAGAATTTCCACCAAAAAATAAAAAAAAATTAAATTTCAAGTTTTCTAAAATTCTAAAATACCAAAAATTTTCACCTGTTTTCAAAAACAAAATAACACA</canonical>
            <polymorphic>TATAGTGCCCAGCTGAGATACGCGTTCCAGGCAAGTACAGTCAAGATTGGTATCAATTTGTAGATCATCTTAAGTTCTATATTATACTTATTAGTTTTAGCAGAAATTCCAAGTATGAACCGAACCTTGTAAGAGATATCAAAAAGAGGTCAACTGATAAAAATTAGCTGATAAAGTAATAAATATTTTATCAGTTGACAACTTTTTGATATCTTTCACAGGAACCGAGATCAATTGACTCGGAATTTGATTAGACCAAAAATGAACTTGCCCTCTTCCTCAACCTACAGACATATGGAATTTTTCCTCGAATTTCCCCTGGTTTCCTAATCAAATGCTGAAATTTGATCATATTTTCTTTTTTGACCACTCCCCAGTCTCTAATGAAATCATTTTTCTTTCCCTCCCCCCGCAATACTACTCCATTCTTATACATTTTTCCCATTTATACATAATTTTTTGATCATTTCCCTAATTTTTTATTATTTTTTGATCATTTRCCTCTGGTTCTCTGAAATCATTATCTTGATTTTTCTAGTTCATTTGATCATTTTTCTGATTTTTTCCCGATTTTTTGGAAAACAAACAATTTGGAATAATTGTTTAATGTCTGATCTTATCAAAATTGTTTTGAGAGCCAAAAAAATCAAAGACAATTGAATTTTTAGGAGGCTCTGATGGGTTTTTGAAAACTTCTGAATTCCTGAATTTTTGAATTTCTGAATTTCTGAAACTGGGCGGAGCCTAGTCGTGTTTGGGCTCATTTTGATGCTGAGAGTGCGCTTGATATGAATACTATGTTGAAATTTCAGAAAATTGAGTTTTGAACATGGAATTTTTGAATTTTCAAAAATTTCGCGTTGGGAAAACATTACAAATTCAATTTTTGCAGCAATTTTTTAGAATTTCCACCAAAAAATAAAAAAAAATTAAATTTCAAGTTTTCTAAAATTCTAAAATACCAAAAATTTTCACCTGTTTTCAAAAACAAAATAACACA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCCTAATCAAATGCTGAAAT</pcr_primer_p1>
		<pcr_primer_p2>AAAATCAGAAAAATGATCAAATG</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>TTTCCTAATCAAATGCTGAAATTTGATCATATTTTCTTTTTTGACCACTCCCCAGTCTCTAATGAAATCATTTTTCTTTCCCTCCCCCCGCAATACTACTCCATTCTTATACATTTTTCCCATTTATACATAATTTTTTGATCATTTCCCTAATTTTTTATTATTTTTTGATCATTTTCCTCTGGTTCTCTGAAATCATTATCTTGATTTTTCTAGTTCATTTGATCATTTTTCTGATTTT</canonical_amplicon>
		<polymorphic_amplicon>TTTCCTAATCAAATGCTGAAATTTGATCATATTTTCTTTTTTGACCACTCCCCAGTCTCTAATGAAATCATTTTTCTTTCCCTCCCCCCGCAATACTACTCCATTCTTATACATTTTTCCCATTTATACATAATTTTTTGATCATTTCCCTAATTTTTTATTATTTTTTGATCATTTRCCTCTGGTTCTCTGAAATCATTATCTTGATTTTTCTAGTTCATTTGATCATTTTTCTGATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39553</snp_id>
        <super_contig>c014000617.Contig3</super_contig>
        <contig_pos>25590</contig_pos>
        <strand>+</strand>
        <context>ACAGGTGTTC[C/T]AACAAAAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTTTAGGAAACGTGAAATTTTCAATTCTTAAACTGCTCACAGGTGTTC</left_flank>
        <right_flank>AACAAAAAAAAATTACAAAAAAAAAACTAAAACCCTGGGTGCATTCTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTCCAAAACAAGGCACAGTTTCTTAAGTAATATCATTTTGTAGCACTCGTTGAGTTCTATCATATTTAATTTATTCATTTAATTTAGTTTAGTGAAAAACATTAATTCTAAAAGAAGCTATGACAGATCCCGCGAAGGCCCGGCAAAGACCCGGTTGCAAGTATATCAAAAATAAATGTTATACTACAATCAAATGACACCAAAAACCCATTTAGTTACTGTACATTTGATGATATTTGCTTTCACAGATACAATGAAGCTTTCAACTCCAAAAATGTTCAAGAATCATCTAAACAGCTGAACAAATATTCTAAAAAATGTGGGTGTACGGTTCTCAGAATTGGAAAAATGAAAACTTGGAAATCGGAAAAACTGAAAAATAGGTGATAAGAAGAACGATACCAATAACCAAGTGATAACAAAGTCTTGAATTTTCGGATACTTATATTTTTAGGAAACGTGAAATTTTCAATTCTTAAACTGCTCACAGGTGTTCAAACAAAAAAAAATTACAAAAAAAAAACTAAAACCCTGGGTGCATTCTTTGGGCAATGATTTGTACCTGAAGTATAACAAATTGATACACCGAGAACAATTGAAAAGTATATAAGCAACCGCCTAGCTCAGGGATCCTTACTTTTCAGCTCCTTCCCAAAGTGTAGCTCATCCCAAGTCATGATTGCTCTAATTTCTCTAGTTTTGGCAGTTTTGGCTCCACAGGCTCAAGCAGTCATCGGTGGAGATCTCAATTGTACCACCTATAATGGAACGGCGGTAAGAGGATTTTTAGAATGTTCTAGAAGATTTCAAAAAAAAAAAAGGTTTCAGTAGTTAAGAAGGTTCTAAAGTGCCCTGATTTTCATAAAACTTTCTGGAACGTTCTAGAATCTTTTAATACACCTAGAGCCTCTGTGGTCTTGAATCAGAAAAACTACGGTTTTCCTAGGTTTTTCAAATGTTCTAAGACTCGGGACACATGAAATCTTACGAATCAAGA</canonical>
            <polymorphic>TTGTTCCAAAACAAGGCACAGTTTCTTAAGTAATATCATTTTGTAGCACTCGTTGAGTTCTATCATATTTAATTTATTCATTTAATTTAGTTTAGTGAAAAACATTAATTCTAAAAGAAGCTATGACAGATCCCGCGAAGGCCCGGCAAAGACCCGGTTGCAAGTATATCAAAAATAAATGTTATACTACAATCAAATGACACCAAAAACCCATTTAGTTACTGTACATTTGATGATATTTGCTTTCACAGATACAATGAAGCTTTCAACTCCAAAAATGTTCAAGAATCATCTAAACAGCTGAACAAATATTCTAAAAAATGTGGGTGTACGGTTCTCAGAATTGGAAAAATGAAAACTTGGAAATCGGAAAAACTGAAAAATAGGTGATAAGAAGAACGATACCAATAACCAAGTGATAACAAAGTCTTGAATTTTCGGATACTTATATTTTTAGGAAACGTGAAATTTTCAATTCTTAAACTGCTCACAGGTGTTCYAACAAAAAAAAATTACAAAAAAAAAACTAAAACCCTGGGTGCATTCTTTGGGCAATGATTTGTACCTGAAGTATAACAAATTGATACACCGAGAACAATTGAAAAGTATATAAGCAACCGCCTAGCTCAGGGATCCTTACTTTTCAGCTCCTTCCCAAAGTGTAGCTCATCCCAAGTCATGATTGCTCTAATTTCTCTAGTTTTGGCAGTTTTGGCTCCACAGGCTCAAGCAGTCATCGGTGGAGATCTCAATTGTACCACCTATAATGGAACGGCGGTAAGAGGATTTTTAGAATGTTCTAGAAGATTTCAAAAAAAAAAAAGGTTTCAGTAGTTAAGAAGGTTCTAAAGTGCCCTGATTTTCATAAAACTTTCTGGAACGTTCTAGAATCTTTTAATACACCTAGAGCCTCTGTGGTCTTGAATCAGAAAAACTACGGTTTTCCTAGGTTTTTCAAATGTTCTAAGACTCGGGACACATGAAATCTTACGAATCAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCAATAACCAAGTGATAACAAAG</pcr_primer_p1>
		<pcr_primer_p2>GAAGGAGCTGAAAAGTAAGGAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCAATAACCAAGTGATAACAAAGTCTTGAATTTTCGGATACTTATATTTTTAGGAAACGTGAAATTTTCAATTCTTAAACTGCTCACAGGTGTTCAAACAAAAAAAAATTACAAAAAAAAAACTAAAACCCTGGGTGCATTCTTTGGGCAATGATTTGTACCTGAAGTATAACAAATTGATACACCGAGAACAATTGAAAAGTATATAAGCAACCGCCTAGCTCAGGGATCCTTACTTTTCAGCTCCTTC</canonical_amplicon>
		<polymorphic_amplicon>CCAATAACCAAGTGATAACAAAGTCTTGAATTTTCGGATACTTATATTTTTAGGAAACGTGAAATTTTCAATTCTTAAACTGCTCACAGGTGTTCYAACAAAAAAAAATTACAAAAAAAAAACTAAAACCCTGGGTGCATTCTTTGGGCAATGATTTGTACCTGAAGTATAACAAATTGATACACCGAGAACAATTGAAAAGTATATAAGCAACCGCCTAGCTCAGGGATCCTTACTTTTCAGCTCCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39554</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>46184</contig_pos>
        <strand></strand>
        <context>agaaatataa[T/A]wtttgttcag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>AAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAA</left_flank>
        <right_flank>ATTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATCGTTTGACCATTGCGAAGTATACAGAAAATAAGACAAACATGCAGGTTACGAAAATCCAATTATTCCAGGCCTGGATTGTGTTCTTGTACTGAAATATTTCAGTTTAATAGAGCGTTGTTTCAACTTTTTTTTTCAAGATATCCCATTTCAAAAATACCCCCAGTTTGAAAACAACAATTAATTCAGATCTAAGTTTTTCATTATGATACTAGCATCCATTTTGTTGCCTTTTTAATTTTTTTTGCCTTTTCAAATTTCCCATTCATAACGATTTATGTACATATGATAGTTGATTCCCCATATTGTCGAATTTTAAAAAGTGGTACCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACAAAAAAGTGCGGCGAAAACTTAATATTTCAGGTTTTCGCCTCGTTGAAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATATTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCTAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTGCCGCTGCTTCTGGACTCGGAACATCTTCAGATAATGGATCTGGTAGCCAAGCCATAATATCCGAGTTGTACACAATGGAGGGGGTGAAATAGTAAATGTAGAATCCGTAAAACAACACAAATGCGATTGAAGAATATGCCAATTTCTTCTCAATCACATCTGCATATTCACGGAACCCAATGGAGATAATACGATTGGCGAATAGGGATACGGTAGCTGCACATGCCATGCACCAGGTGTCTGGAAGTAAGAAGATAGGTCTTCGAGAAGTTTCTGGAGGAACTTGGAGAAGGCTGATTCAAAAAATTTTGAAGCCAATCCAATATCTGAATTCTAAACTTTTGTCTT</canonical>
            <polymorphic>CAATCGTTTGACCATTGCGAAGTATACAGAAAATAAGACAAACATGCAGGTTACGAAAATCCAATTATTCCAGGCCTGGATTGTGTTCTTGTACTGAAATATTTCAGTTTAATAGAGCGTTGTTTCAACTTTTTTTTTCAAGATATCCCATTTCAAAAATACCCCCAGTTTGAAAACAACAATTAATTCAGATCTAAGTTTTTCATTATGATACTAGCATCCATTTTGTTGCCTTTTTAATTTTTTTTGCCTTTTCAAATTTCCCATTCATAACGATTTATGTACATATGATAGTTGATTCCCCATATTGTCGAATTTTAAAAAGTGGTACCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACAAAAAAGTGCGGCGAAAACTTAATATTTCAGGTTTTCGCCTCGTTGAAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAAWATTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCTAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTGCCGCTGCTTCTGGACTCGGAACATCTTCAGATAATGGATCTGGTAGCCAAGCCATAATATCCGAGTTGTACACAATGGAGGGGGTGAAATAGTAAATGTAGAATCCGTAAAACAACACAAATGCGATTGAAGAATATGCCAATTTCTTCTCAATCACATCTGCATATTCACGGAACCCAATGGAGATAATACGATTGGCGAATAGGGATACGGTAGCTGCACATGCCATGCACCAGGTGTCTGGAAGTAAGAAGATAGGTCTTCGAGAAGTTTCTGGAGGAACTTGGAGAAGGCTGATTCAAAAAATTTTGAAGCCAATCCAATATCTGAATTCTAAACTTTTGTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 291 109 100</canonical_bands>
                <polymorphic_bands>609 291 100</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCCCATTCATAACGATTTA</pcr_primer_p1>
		<pcr_primer_p2>GCAATGGTACTGTCGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>ATTTCCCATTCATAACGATTTATGTACATATGATAGTTGATTCCCCATATTGTCGAATTTTAAAAAGTGGTACCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACAAAAAAGTGCGGCGAAAACTTAATATTTCAGGTTTTCGCCTCGTTGAAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATATTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCTAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTCCCATTCATAACGATTTATGTACATATGATAGTTGATTCCCCATATTGTCGAATTTTAAAAAGTGGTACCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACAAAAAAGTGCGGCGAAAACTTAATATTTCAGGTTTTCGCCTCGTTGAAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAAWATTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCTAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39555</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>46185</contig_pos>
        <strand></strand>
        <context>gaaatataaw[A/T]tttgttcagr</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAAT</left_flank>
        <right_flank>TTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTAC</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCGTTTGACCATTGCGAAGTATACAGAAAATAAGACAAACATGCAGGTTACGAAAATCCAATTATTCCAGGCCTGGATTGTGTTCTTGTACTGAAATATTTCAGTTTAATAGAGCGTTGTTTCAACTTTTTTTTTCAAGATATCCCATTTCAAAAATACCCCCAGTTTGAAAACAACAATTAATTCAGATCTAAGTTTTTCATTATGATACTAGCATCCATTTTGTTGCCTTTTTAATTTTTTTTGCCTTTTCAAATTTCCCATTCATAACGATTTATGTACATATGATAGTTGATTCCCCATATTGTCGAATTTTAAAAAGTGGTACCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACAAAAAAGTGCGGCGAAAACTTAATATTTCAGGTTTTCGCCTCGTTGAAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATATTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCTAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTGCCGCTGCTTCTGGACTCGGAACATCTTCAGATAATGGATCTGGTAGCCAAGCCATAATATCCGAGTTGTACACAATGGAGGGGGTGAAATAGTAAATGTAGAATCCGTAAAACAACACAAATGCGATTGAAGAATATGCCAATTTCTTCTCAATCACATCTGCATATTCACGGAACCCAATGGAGATAATACGATTGGCGAATAGGGATACGGTAGCTGCACATGCCATGCACCAGGTGTCTGGAAGTAAGAAGATAGGTCTTCGAGAAGTTTCTGGAGGAACTTGGAGAAGGCTGATTCAAAAAATTTTGAAGCCAATCCAATATCTGAATTCTAAACTTTTGTCTTA</canonical>
            <polymorphic>AATCGTTTGACCATTGCGAAGTATACAGAAAATAAGACAAACATGCAGGTTACGAAAATCCAATTATTCCAGGCCTGGATTGTGTTCTTGTACTGAAATATTTCAGTTTAATAGAGCGTTGTTTCAACTTTTTTTTTCAAGATATCCCATTTCAAAAATACCCCCAGTTTGAAAACAACAATTAATTCAGATCTAAGTTTTTCATTATGATACTAGCATCCATTTTGTTGCCTTTTTAATTTTTTTTGCCTTTTCAAATTTCCCATTCATAACGATTTATGTACATATGATAGTTGATTCCCCATATTGTCGAATTTTAAAAAGTGGTACCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACAAAAAAGTGCGGCGAAAACTTAATATTTCAGGTTTTCGCCTCGTTGAAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATWTTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCTAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTGCCGCTGCTTCTGGACTCGGAACATCTTCAGATAATGGATCTGGTAGCCAAGCCATAATATCCGAGTTGTACACAATGGAGGGGGTGAAATAGTAAATGTAGAATCCGTAAAACAACACAAATGCGATTGAAGAATATGCCAATTTCTTCTCAATCACATCTGCATATTCACGGAACCCAATGGAGATAATACGATTGGCGAATAGGGATACGGTAGCTGCACATGCCATGCACCAGGTGTCTGGAAGTAAGAAGATAGGTCTTCGAGAAGTTTCTGGAGGAACTTGGAGAAGGCTGATTCAAAAAATTTTGAAGCCAATCCAATATCTGAATTCTAAACTTTTGTCTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 291 109 99</canonical_bands>
                <polymorphic_bands>610 291 99</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCCCATTCATAACGATTTA</pcr_primer_p1>
		<pcr_primer_p2>GCAATGGTACTGTCGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>ATTTCCCATTCATAACGATTTATGTACATATGATAGTTGATTCCCCATATTGTCGAATTTTAAAAAGTGGTACCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACAAAAAAGTGCGGCGAAAACTTAATATTTCAGGTTTTCGCCTCGTTGAAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATATTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCTAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTCCCATTCATAACGATTTATGTACATATGATAGTTGATTCCCCATATTGTCGAATTTTAAAAAGTGGTACCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACAAAAAAGTGCGGCGAAAACTTAATATTTCAGGTTTTCGCCTCGTTGAAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATWTTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCTAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39556</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>46195</contig_pos>
        <strand></strand>
        <context>wtttgttcag[G/A]aaatcccact</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATATTTGTTCAG</left_flank>
        <right_flank>AAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCATTGCGAAGTATACAGAAAATAAGACAAACATGCAGGTTACGAAAATCCAATTATTCCAGGCCTGGATTGTGTTCTTGTACTGAAATATTTCAGTTTAATAGAGCGTTGTTTCAACTTTTTTTTTCAAGATATCCCATTTCAAAAATACCCCCAGTTTGAAAACAACAATTAATTCAGATCTAAGTTTTTCATTATGATACTAGCATCCATTTTGTTGCCTTTTTAATTTTTTTTGCCTTTTCAAATTTCCCATTCATAACGATTTATGTACATATGATAGTTGATTCCCCATATTGTCGAATTTTAAAAAGTGGTACCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACAAAAAAGTGCGGCGAAAACTTAATATTTCAGGTTTTCGCCTCGTTGAAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATATTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCTAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTGCCGCTGCTTCTGGACTCGGAACATCTTCAGATAATGGATCTGGTAGCCAAGCCATAATATCCGAGTTGTACACAATGGAGGGGGTGAAATAGTAAATGTAGAATCCGTAAAACAACACAAATGCGATTGAAGAATATGCCAATTTCTTCTCAATCACATCTGCATATTCACGGAACCCAATGGAGATAATACGATTGGCGAATAGGGATACGGTAGCTGCACATGCCATGCACCAGGTGTCTGGAAGTAAGAAGATAGGTCTTCGAGAAGTTTCTGGAGGAACTTGGAGAAGGCTGATTCAAAAAATTTTGAAGCCAATCCAATATCTGAATTCTAAACTTTTGTCTTATGTCGAAGTG</canonical>
            <polymorphic>CCATTGCGAAGTATACAGAAAATAAGACAAACATGCAGGTTACGAAAATCCAATTATTCCAGGCCTGGATTGTGTTCTTGTACTGAAATATTTCAGTTTAATAGAGCGTTGTTTCAACTTTTTTTTTCAAGATATCCCATTTCAAAAATACCCCCAGTTTGAAAACAACAATTAATTCAGATCTAAGTTTTTCATTATGATACTAGCATCCATTTTGTTGCCTTTTTAATTTTTTTTGCCTTTTCAAATTTCCCATTCATAACGATTTATGTACATATGATAGTTGATTCCCCATATTGTCGAATTTTAAAAAGTGGTACCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACAAAAAAGTGCGGCGAAAACTTAATATTTCAGGTTTTCGCCTCGTTGAAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATATTTGTTCAGRAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCTAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTGCCGCTGCTTCTGGACTCGGAACATCTTCAGATAATGGATCTGGTAGCCAAGCCATAATATCCGAGTTGTACACAATGGAGGGGGTGAAATAGTAAATGTAGAATCCGTAAAACAACACAAATGCGATTGAAGAATATGCCAATTTCTTCTCAATCACATCTGCATATTCACGGAACCCAATGGAGATAATACGATTGGCGAATAGGGATACGGTAGCTGCACATGCCATGCACCAGGTGTCTGGAAGTAAGAAGATAGGTCTTCGAGAAGTTTCTGGAGGAACTTGGAGAAGGCTGATTCAAAAAATTTTGAAGCCAATCCAATATCTGAATTCTAAACTTTTGTCTTATGTCGAAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>369 231 128 85 79 75 23 10</canonical_bands>
                <polymorphic_bands>448 231 128 85 75 23 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCCCATTCATAACGATTTA</pcr_primer_p1>
		<pcr_primer_p2>GCAATGGTACTGTCGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>ATTTCCCATTCATAACGATTTATGTACATATGATAGTTGATTCCCCATATTGTCGAATTTTAAAAAGTGGTACCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACAAAAAAGTGCGGCGAAAACTTAATATTTCAGGTTTTCGCCTCGTTGAAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATATTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCTAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTCCCATTCATAACGATTTATGTACATATGATAGTTGATTCCCCATATTGTCGAATTTTAAAAAGTGGTACCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACAAAAAAGTGCGGCGAAAACTTAATATTTCAGGTTTTCGCCTCGTTGAAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATATTTGTTCAGRAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCTAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39557</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>46228</contig_pos>
        <strand></strand>
        <context>ataagttttg[T/C]ttactaccgt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATATAATATTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTG</left_flank>
        <right_flank>TTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGC</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCAGGTTACGAAAATCCAATTATTCCAGGCCTGGATTGTGTTCTTGTACTGAAATATTTCAGTTTAATAGAGCGTTGTTTCAACTTTTTTTTTCAAGATATCCCATTTCAAAAATACCCCCAGTTTGAAAACAACAATTAATTCAGATCTAAGTTTTTCATTATGATACTAGCATCCATTTTGTTGCCTTTTTAATTTTTTTTGCCTTTTCAAATTTCCCATTCATAACGATTTATGTACATATGATAGTTGATTCCCCATATTGTCGAATTTTAAAAAGTGGTACCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACAAAAAAGTGCGGCGAAAACTTAATATTTCAGGTTTTCGCCTCGTTGAAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATATTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCTAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTGCCGCTGCTTCTGGACTCGGAACATCTTCAGATAATGGATCTGGTAGCCAAGCCATAATATCCGAGTTGTACACAATGGAGGGGGTGAAATAGTAAATGTAGAATCCGTAAAACAACACAAATGCGATTGAAGAATATGCCAATTTCTTCTCAATCACATCTGCATATTCACGGAACCCAATGGAGATAATACGATTGGCGAATAGGGATACGGTAGCTGCACATGCCATGCACCAGGTGTCTGGAAGTAAGAAGATAGGTCTTCGAGAAGTTTCTGGAGGAACTTGGAGAAGGCTGATTCAAAAAATTTTGAAGCCAATCCAATATCTGAATTCTAAACTTTTGTCTTATGTCGAAGTGTTGAAACAGCAAGAATTAGCGTAGAACGTTTCT</canonical>
            <polymorphic>TGCAGGTTACGAAAATCCAATTATTCCAGGCCTGGATTGTGTTCTTGTACTGAAATATTTCAGTTTAATAGAGCGTTGTTTCAACTTTTTTTTTCAAGATATCCCATTTCAAAAATACCCCCAGTTTGAAAACAACAATTAATTCAGATCTAAGTTTTTCATTATGATACTAGCATCCATTTTGTTGCCTTTTTAATTTTTTTTGCCTTTTCAAATTTCCCATTCATAACGATTTATGTACATATGATAGTTGATTCCCCATATTGTCGAATTTTAAAAAGTGGTACCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACAAAAAAGTGCGGCGAAAACTTAATATTTCAGGTTTTCGCCTCGTTGAAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATATTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGYTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCTAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTGCCGCTGCTTCTGGACTCGGAACATCTTCAGATAATGGATCTGGTAGCCAAGCCATAATATCCGAGTTGTACACAATGGAGGGGGTGAAATAGTAAATGTAGAATCCGTAAAACAACACAAATGCGATTGAAGAATATGCCAATTTCTTCTCAATCACATCTGCATATTCACGGAACCCAATGGAGATAATACGATTGGCGAATAGGGATACGGTAGCTGCACATGCCATGCACCAGGTGTCTGGAAGTAAGAAGATAGGTCTTCGAGAAGTTTCTGGAGGAACTTGGAGAAGGCTGATTCAAAAAATTTTGAAGCCAATCCAATATCTGAATTCTAAACTTTTGTCTTATGTCGAAGTGTTGAAACAGCAAGAATTAGCGTAGAACGTTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 322 177</canonical_bands>
                <polymorphic_bands>678 322</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCCCATTCATAACGATTTA</pcr_primer_p1>
		<pcr_primer_p2>GCAATGGTACTGTCGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>ATTTCCCATTCATAACGATTTATGTACATATGATAGTTGATTCCCCATATTGTCGAATTTTAAAAAGTGGTACCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACAAAAAAGTGCGGCGAAAACTTAATATTTCAGGTTTTCGCCTCGTTGAAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATATTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCTAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTCCCATTCATAACGATTTATGTACATATGATAGTTGATTCCCCATATTGTCGAATTTTAAAAAGTGGTACCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACAAAAAAGTGCGGCGAAAACTTAATATTTCAGGTTTTCGCCTCGTTGAAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATATTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGYTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCTAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39558</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>46280</contig_pos>
        <strand></strand>
        <context>tcttgaagcc[G/A]cccgckaaat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCC</left_flank>
        <right_flank>CCCGCTAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATATTTCAGTTTAATAGAGCGTTGTTTCAACTTTTTTTTTCAAGATATCCCATTTCAAAAATACCCCCAGTTTGAAAACAACAATTAATTCAGATCTAAGTTTTTCATTATGATACTAGCATCCATTTTGTTGCCTTTTTAATTTTTTTTGCCTTTTCAAATTTCCCATTCATAACGATTTATGTACATATGATAGTTGATTCCCCATATTGTCGAATTTTAAAAAGTGGTACCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACAAAAAAGTGCGGCGAAAACTTAATATTTCAGGTTTTCGCCTCGTTGAAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATATTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCTAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTGCCGCTGCTTCTGGACTCGGAACATCTTCAGATAATGGATCTGGTAGCCAAGCCATAATATCCGAGTTGTACACAATGGAGGGGGTGAAATAGTAAATGTAGAATCCGTAAAACAACACAAATGCGATTGAAGAATATGCCAATTTCTTCTCAATCACATCTGCATATTCACGGAACCCAATGGAGATAATACGATTGGCGAATAGGGATACGGTAGCTGCACATGCCATGCACCAGGTGTCTGGAAGTAAGAAGATAGGTCTTCGAGAAGTTTCTGGAGGAACTTGGAGAAGGCTGATTCAAAAAATTTTGAAGCCAATCCAATATCTGAATTCTAAACTTTTGTCTTATGTCGAAGTGTTGAAACAGCAAGAATTAGCGTAGAACGTTTCTTGCTATTTACATTTTTAGCTCATTTATCTCGATTTCTGTAAGAAATATCAAA</canonical>
            <polymorphic>AAATATTTCAGTTTAATAGAGCGTTGTTTCAACTTTTTTTTTCAAGATATCCCATTTCAAAAATACCCCCAGTTTGAAAACAACAATTAATTCAGATCTAAGTTTTTCATTATGATACTAGCATCCATTTTGTTGCCTTTTTAATTTTTTTTGCCTTTTCAAATTTCCCATTCATAACGATTTATGTACATATGATAGTTGATTCCCCATATTGTCGAATTTTAAAAAGTGGTACCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACAAAAAAGTGCGGCGAAAACTTAATATTTCAGGTTTTCGCCTCGTTGAAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATATTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCRCCCGCTAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTGCCGCTGCTTCTGGACTCGGAACATCTTCAGATAATGGATCTGGTAGCCAAGCCATAATATCCGAGTTGTACACAATGGAGGGGGTGAAATAGTAAATGTAGAATCCGTAAAACAACACAAATGCGATTGAAGAATATGCCAATTTCTTCTCAATCACATCTGCATATTCACGGAACCCAATGGAGATAATACGATTGGCGAATAGGGATACGGTAGCTGCACATGCCATGCACCAGGTGTCTGGAAGTAAGAAGATAGGTCTTCGAGAAGTTTCTGGAGGAACTTGGAGAAGGCTGATTCAAAAAATTTTGAAGCCAATCCAATATCTGAATTCTAAACTTTTGTCTTATGTCGAAGTGTTGAAACAGCAAGAATTAGCGTAGAACGTTTCTTGCTATTTACATTTTTAGCTCATTTATCTCGATTTCTGTAAGAAATATCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>498 443 55 4</canonical_bands>
                <polymorphic_bands>502 443 55</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 374 128</canonical_bands>
                <polymorphic_bands>626 374</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>283 225 217 216 59</canonical_bands>
                <polymorphic_bands>283 276 225 216</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>441 283 217 59</canonical_bands>
                <polymorphic_bands>441 283 276</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTTCCCATTCATAACGATTTA</pcr_primer_p1>
		<pcr_primer_p2>GCAATGGTACTGTCGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>ATTTCCCATTCATAACGATTTATGTACATATGATAGTTGATTCCCCATATTGTCGAATTTTAAAAAGTGGTACCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACAAAAAAGTGCGGCGAAAACTTAATATTTCAGGTTTTCGCCTCGTTGAAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATATTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCTAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTCCCATTCATAACGATTTATGTACATATGATAGTTGATTCCCCATATTGTCGAATTTTAAAAAGTGGTACCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACAAAAAAGTGCGGCGAAAACTTAATATTTCAGGTTTTCGCCTCGTTGAAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATATTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCRCCCGCTAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39559</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>46286</contig_pos>
        <strand></strand>
        <context>agccrcccgc[T/G]aaattttcca</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>CGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGC</left_flank>
        <right_flank>AAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCAGTTTAATAGAGCGTTGTTTCAACTTTTTTTTTCAAGATATCCCATTTCAAAAATACCCCCAGTTTGAAAACAACAATTAATTCAGATCTAAGTTTTTCATTATGATACTAGCATCCATTTTGTTGCCTTTTTAATTTTTTTTGCCTTTTCAAATTTCCCATTCATAACGATTTATGTACATATGATAGTTGATTCCCCATATTGTCGAATTTTAAAAAGTGGTACCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACAAAAAAGTGCGGCGAAAACTTAATATTTCAGGTTTTCGCCTCGTTGAAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATATTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCTAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTGCCGCTGCTTCTGGACTCGGAACATCTTCAGATAATGGATCTGGTAGCCAAGCCATAATATCCGAGTTGTACACAATGGAGGGGGTGAAATAGTAAATGTAGAATCCGTAAAACAACACAAATGCGATTGAAGAATATGCCAATTTCTTCTCAATCACATCTGCATATTCACGGAACCCAATGGAGATAATACGATTGGCGAATAGGGATACGGTAGCTGCACATGCCATGCACCAGGTGTCTGGAAGTAAGAAGATAGGTCTTCGAGAAGTTTCTGGAGGAACTTGGAGAAGGCTGATTCAAAAAATTTTGAAGCCAATCCAATATCTGAATTCTAAACTTTTGTCTTATGTCGAAGTGTTGAAACAGCAAGAATTAGCGTAGAACGTTTCTTGCTATTTACATTTTTAGCTCATTTATCTCGATTTCTGTAAGAAATATCAAAAATCTG</canonical>
            <polymorphic>TTCAGTTTAATAGAGCGTTGTTTCAACTTTTTTTTTCAAGATATCCCATTTCAAAAATACCCCCAGTTTGAAAACAACAATTAATTCAGATCTAAGTTTTTCATTATGATACTAGCATCCATTTTGTTGCCTTTTTAATTTTTTTTGCCTTTTCAAATTTCCCATTCATAACGATTTATGTACATATGATAGTTGATTCCCCATATTGTCGAATTTTAAAAAGTGGTACCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACAAAAAAGTGCGGCGAAAACTTAATATTTCAGGTTTTCGCCTCGTTGAAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATATTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCKAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTGCCGCTGCTTCTGGACTCGGAACATCTTCAGATAATGGATCTGGTAGCCAAGCCATAATATCCGAGTTGTACACAATGGAGGGGGTGAAATAGTAAATGTAGAATCCGTAAAACAACACAAATGCGATTGAAGAATATGCCAATTTCTTCTCAATCACATCTGCATATTCACGGAACCCAATGGAGATAATACGATTGGCGAATAGGGATACGGTAGCTGCACATGCCATGCACCAGGTGTCTGGAAGTAAGAAGATAGGTCTTCGAGAAGTTTCTGGAGGAACTTGGAGAAGGCTGATTCAAAAAATTTTGAAGCCAATCCAATATCTGAATTCTAAACTTTTGTCTTATGTCGAAGTGTTGAAACAGCAAGAATTAGCGTAGAACGTTTCTTGCTATTTACATTTTTAGCTCATTTATCTCGATTTCTGTAAGAAATATCAAAAATCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCCCATTCATAACGATTTA</pcr_primer_p1>
		<pcr_primer_p2>GCAATGGTACTGTCGATTTT</pcr_primer_p2>
		<pcr_amplicon_size>395</pcr_amplicon_size>
		<canonical_amplicon>ATTTCCCATTCATAACGATTTATGTACATATGATAGTTGATTCCCCATATTGTCGAATTTTAAAAAGTGGTACCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACAAAAAAGTGCGGCGAAAACTTAATATTTCAGGTTTTCGCCTCGTTGAAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATATTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCTAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTCCCATTCATAACGATTTATGTACATATGATAGTTGATTCCCCATATTGTCGAATTTTAAAAAGTGGTACCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACAAAAAAGTGCGGCGAAAACTTAATATTTCAGGTTTTCGCCTCGTTGAAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATATTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCKAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39560</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>46301</contig_pos>
        <strand></strand>
        <context>tttccaggtc[T/C]cactttttta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCTAAATTTTCCAGGTC</left_flank>
        <right_flank>CACTTTTTTAAATAAAAAAATCGACAGTACCATTGCCGCTGCTTCTGGAC</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTTGTTTCAACTTTTTTTTTCAAGATATCCCATTTCAAAAATACCCCCAGTTTGAAAACAACAATTAATTCAGATCTAAGTTTTTCATTATGATACTAGCATCCATTTTGTTGCCTTTTTAATTTTTTTTGCCTTTTCAAATTTCCCATTCATAACGATTTATGTACATATGATAGTTGATTCCCCATATTGTCGAATTTTAAAAAGTGGTACCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACAAAAAAGTGCGGCGAAAACTTAATATTTCAGGTTTTCGCCTCGTTGAAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATATTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCTAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTGCCGCTGCTTCTGGACTCGGAACATCTTCAGATAATGGATCTGGTAGCCAAGCCATAATATCCGAGTTGTACACAATGGAGGGGGTGAAATAGTAAATGTAGAATCCGTAAAACAACACAAATGCGATTGAAGAATATGCCAATTTCTTCTCAATCACATCTGCATATTCACGGAACCCAATGGAGATAATACGATTGGCGAATAGGGATACGGTAGCTGCACATGCCATGCACCAGGTGTCTGGAAGTAAGAAGATAGGTCTTCGAGAAGTTTCTGGAGGAACTTGGAGAAGGCTGATTCAAAAAATTTTGAAGCCAATCCAATATCTGAATTCTAAACTTTTGTCTTATGTCGAAGTGTTGAAACAGCAAGAATTAGCGTAGAACGTTTCTTGCTATTTACATTTTTAGCTCATTTATCTCGATTTCTGTAAGAAATATCAAAAATCTGCAAACTACAAAAATG</canonical>
            <polymorphic>CGTTGTTTCAACTTTTTTTTTCAAGATATCCCATTTCAAAAATACCCCCAGTTTGAAAACAACAATTAATTCAGATCTAAGTTTTTCATTATGATACTAGCATCCATTTTGTTGCCTTTTTAATTTTTTTTGCCTTTTCAAATTTCCCATTCATAACGATTTATGTACATATGATAGTTGATTCCCCATATTGTCGAATTTTAAAAAGTGGTACCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACAAAAAAGTGCGGCGAAAACTTAATATTTCAGGTTTTCGCCTCGTTGAAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATATTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCTAAATTTTCCAGGTCYCACTTTTTTAAATAAAAAAATCGACAGTACCATTGCCGCTGCTTCTGGACTCGGAACATCTTCAGATAATGGATCTGGTAGCCAAGCCATAATATCCGAGTTGTACACAATGGAGGGGGTGAAATAGTAAATGTAGAATCCGTAAAACAACACAAATGCGATTGAAGAATATGCCAATTTCTTCTCAATCACATCTGCATATTCACGGAACCCAATGGAGATAATACGATTGGCGAATAGGGATACGGTAGCTGCACATGCCATGCACCAGGTGTCTGGAAGTAAGAAGATAGGTCTTCGAGAAGTTTCTGGAGGAACTTGGAGAAGGCTGATTCAAAAAATTTTGAAGCCAATCCAATATCTGAATTCTAAACTTTTGTCTTATGTCGAAGTGTTGAAACAGCAAGAATTAGCGTAGAACGTTTCTTGCTATTTACATTTTTAGCTCATTTATCTCGATTTCTGTAAGAAATATCAAAAATCTGCAAACTACAAAAATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTCCCATTCATAACGATTTA</pcr_primer_p1>
		<pcr_primer_p2>GCTACCAGATCCATTATCTGAA</pcr_primer_p2>
		<pcr_amplicon_size>441</pcr_amplicon_size>
		<canonical_amplicon>ATTTCCCATTCATAACGATTTATGTACATATGATAGTTGATTCCCCATATTGTCGAATTTTAAAAAGTGGTACCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACAAAAAAGTGCGGCGAAAACTTAATATTTCAGGTTTTCGCCTCGTTGAAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATATTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCTAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTGCCGCTGCTTCTGGACTCGGAACATCTTCAGATAATGGATCTGGTAGC</canonical_amplicon>
		<polymorphic_amplicon>ATTTCCCATTCATAACGATTTATGTACATATGATAGTTGATTCCCCATATTGTCGAATTTTAAAAAGTGGTACCTGAAAATTTGAAAGGCGTAGCTTTTTTTGATCTACAAAAAAGTGCGGCGAAAACTTAATATTTCAGGTTTTCGCCTCGTTGAAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATATTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCTAAATTTTCCAGGTCYCACTTTTTTAAATAAAAAAATCGACAGTACCATTGCCGCTGCTTCTGGACTCGGAACATCTTCAGATAATGGATCTGGTAGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39561</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>46586</contig_pos>
        <strand>+</strand>
        <context>TCTGGAAGTA[A/T]GAAGATAGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAATAGGGATACGGTAGCTGCACATGCCATGCACCAGGTGTCTGGAAGTA</left_flank>
        <right_flank>GAAGATAGGTCTTCGAGAAGTTTCTGGAGGAACTTGGAGAAGGCTGATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGCCTCGTTGAAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATATTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCTAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTGCCGCTGCTTCTGGACTCGGAACATCTTCAGATAATGGATCTGGTAGCCAAGCCATAATATCCGAGTTGTACACAATGGAGGGGGTGAAATAGTAAATGTAGAATCCGTAAAACAACACAAATGCGATTGAAGAATATGCCAATTTCTTCTCAATCACATCTGCATATTCACGGAACCCAATGGAGATAATACGATTGGCGAATAGGGATACGGTAGCTGCACATGCCATGCACCAGGTGTCTGGAAGTAAGAAGATAGGTCTTCGAGAAGTTTCTGGAGGAACTTGGAGAAGGCTGATTCAAAAAATTTTGAAGCCAATCCAATATCTGAATTCTAAACTTTTGTCTTATGTCGAAGTGTTGAAACAGCAAGAATTAGCGTAGAACGTTTCTTGCTATTTACATTTTTAGCTCATTTATCTCGATTTCTGTAAGAAATATCAAAAATCTGCAAACTACAAAAATGTGCATGATATTACGGTAAACATTTTAGCAGTTTACAGATTTTTGATATCTCTTAAACGAACCGAGATAATTGAGCTTAAAATACGGGTGTCGTAGGTTAGTGGATGGGGCCTCAGAATTTCTAGGAAAACTCTTCCTATGGCGCCTTTTTAAACTCACTCAACACAAATCCACCGGCGACGTAGGTAAAAGTCGGATACATACAAAAAACGGATCCAATAATGAGCAATGGTCCAGTAATCAGACAACTACAACACGTGGCACTCATATCGATCATGGCCAACAT</canonical>
            <polymorphic>TCGCCTCGTTGAAGCTACTTTCGCAATTAAGTTCGGTTTTTCGATGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATATTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCTAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTGCCGCTGCTTCTGGACTCGGAACATCTTCAGATAATGGATCTGGTAGCCAAGCCATAATATCCGAGTTGTACACAATGGAGGGGGTGAAATAGTAAATGTAGAATCCGTAAAACAACACAAATGCGATTGAAGAATATGCCAATTTCTTCTCAATCACATCTGCATATTCACGGAACCCAATGGAGATAATACGATTGGCGAATAGGGATACGGTAGCTGCACATGCCATGCACCAGGTGTCTGGAAGTAWGAAGATAGGTCTTCGAGAAGTTTCTGGAGGAACTTGGAGAAGGCTGATTCAAAAAATTTTGAAGCCAATCCAATATCTGAATTCTAAACTTTTGTCTTATGTCGAAGTGTTGAAACAGCAAGAATTAGCGTAGAACGTTTCTTGCTATTTACATTTTTAGCTCATTTATCTCGATTTCTGTAAGAAATATCAAAAATCTGCAAACTACAAAAATGTGCATGATATTACGGTAAACATTTTAGCAGTTTACAGATTTTTGATATCTCTTAAACGAACCGAGATAATTGAGCTTAAAATACGGGTGTCGTAGGTTAGTGGATGGGGCCTCAGAATTTCTAGGAAAACTCTTCCTATGGCGCCTTTTTAAACTCACTCAACACAAATCCACCGGCGACGTAGGTAAAAGTCGGATACATACAAAAAACGGATCCAATAATGAGCAATGGTCCAGTAATCAGACAACTACAACACGTGGCACTCATATCGATCATGGCCAACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAATATGCCAATTTCTTCTCA</pcr_primer_p1>
		<pcr_primer_p2>CTAATTCTTGCTGTTTCAACACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGAATATGCCAATTTCTTCTCAATCACATCTGCATATTCACGGAACCCAATGGAGATAATACGATTGGCGAATAGGGATACGGTAGCTGCACATGCCATGCACCAGGTGTCTGGAAGTAAGAAGATAGGTCTTCGAGAAGTTTCTGGAGGAACTTGGAGAAGGCTGATTCAAAAAATTTTGAAGCCAATCCAATATCTGAATTCTAAACTTTTGTCTTATGTCGAAGTGTTGAAACAGCAAGAATTAG</canonical_amplicon>
		<polymorphic_amplicon>AGAATATGCCAATTTCTTCTCAATCACATCTGCATATTCACGGAACCCAATGGAGATAATACGATTGGCGAATAGGGATACGGTAGCTGCACATGCCATGCACCAGGTGTCTGGAAGTAWGAAGATAGGTCTTCGAGAAGTTTCTGGAGGAACTTGGAGAAGGCTGATTCAAAAAATTTTGAAGCCAATCCAATATCTGAATTCTAAACTTTTGTCTTATGTCGAAGTGTTGAAACAGCAAGAATTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39562</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>46630</contig_pos>
        <strand>+</strand>
        <context>TTGGAGAAGK[G/T]TGATTCAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAGTAAGAAGATAGGTCTTCGAGAAGTTTCTGGAGGAACTTGGAGAAGG</left_flank>
        <right_flank>TGATTCAAAAAATTTTGAAGCCAATCCAATATCTGAATTCTAAACTTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATATTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCTAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTGCCGCTGCTTCTGGACTCGGAACATCTTCAGATAATGGATCTGGTAGCCAAGCCATAATATCCGAGTTGTACACAATGGAGGGGGTGAAATAGTAAATGTAGAATCCGTAAAACAACACAAATGCGATTGAAGAATATGCCAATTTCTTCTCAATCACATCTGCATATTCACGGAACCCAATGGAGATAATACGATTGGCGAATAGGGATACGGTAGCTGCACATGCCATGCACCAGGTGTCTGGAAGTAAGAAGATAGGTCTTCGAGAAGTTTCTGGAGGAACTTGGAGAAGGCTGATTCAAAAAATTTTGAAGCCAATCCAATATCTGAATTCTAAACTTTTGTCTTATGTCGAAGTGTTGAAACAGCAAGAATTAGCGTAGAACGTTTCTTGCTATTTACATTTTTAGCTCATTTATCTCGATTTCTGTAAGAAATATCAAAAATCTGCAAACTACAAAAATGTGCATGATATTACGGTAAACATTTTAGCAGTTTACAGATTTTTGATATCTCTTAAACGAACCGAGATAATTGAGCTTAAAATACGGGTGTCGTAGGTTAGTGGATGGGGCCTCAGAATTTCTAGGAAAACTCTTCCTATGGCGCCTTTTTAAACTCACTCAACACAAATCCACCGGCGACGTAGGTAAAAGTCGGATACATACAAAAAACGGATCCAATAATGAGCAATGGTCCAGTAATCAGACAACTACAACACGTGGCACTCATATCGATCATGGCCAACATCAAAATGATTTTATAACAGGCATGTCTGATGAGTTTAGTTTTAA</canonical>
            <polymorphic>TGAAAAACAGATTCTAAAGATGCTAGCGATCATTTTCCTACCAAGAAATATAATATTTGTTCAGGAAATCCCACTAAATTCACAGAAATAAGTTTTGTTTACTACCGTAGTGTTTCTGGGGCAAGGCCTCGAAAATTGATCTTGAAGCCGCCCGCTAAATTTTCCAGGTCTCACTTTTTTAAATAAAAAAATCGACAGTACCATTGCCGCTGCTTCTGGACTCGGAACATCTTCAGATAATGGATCTGGTAGCCAAGCCATAATATCCGAGTTGTACACAATGGAGGGGGTGAAATAGTAAATGTAGAATCCGTAAAACAACACAAATGCGATTGAAGAATATGCCAATTTCTTCTCAATCACATCTGCATATTCACGGAACCCAATGGAGATAATACGATTGGCGAATAGGGATACGGTAGCTGCACATGCCATGCACCAGGTGTCTGGAAGTAAGAAGATAGGTCTTCGAGAAGTTTCTGGAGGAACTTGGAGAAGGKTGATTCAAAAAATTTTGAAGCCAATCCAATATCTGAATTCTAAACTTTTGTCTTATGTCGAAGTGTTGAAACAGCAAGAATTAGCGTAGAACGTTTCTTGCTATTTACATTTTTAGCTCATTTATCTCGATTTCTGTAAGAAATATCAAAAATCTGCAAACTACAAAAATGTGCATGATATTACGGTAAACATTTTAGCAGTTTACAGATTTTTGATATCTCTTAAACGAACCGAGATAATTGAGCTTAAAATACGGGTGTCGTAGGTTAGTGGATGGGGCCTCAGAATTTCTAGGAAAACTCTTCCTATGGCGCCTTTTTAAACTCACTCAACACAAATCCACCGGCGACGTAGGTAAAAGTCGGATACATACAAAAAACGGATCCAATAATGAGCAATGGTCCAGTAATCAGACAACTACAACACGTGGCACTCATATCGATCATGGCCAACATCAAAATGATTTTATAACAGGCATGTCTGATGAGTTTAGTTTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>169 165 129 126 105 96 77 51 35 21 21 5</canonical_bands>
                <polymorphic_bands>169 165 129 126 105 98 96 51 35 21 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGAATATGCCAATTTCTTCTCA</pcr_primer_p1>
		<pcr_primer_p2>CTAATTCTTGCTGTTTCAACACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>AGAATATGCCAATTTCTTCTCAATCACATCTGCATATTCACGGAACCCAATGGAGATAATACGATTGGCGAATAGGGATACGGTAGCTGCACATGCCATGCACCAGGTGTCTGGAAGTAAGAAGATAGGTCTTCGAGAAGTTTCTGGAGGAACTTGGAGAAGGCTGATTCAAAAAATTTTGAAGCCAATCCAATATCTGAATTCTAAACTTTTGTCTTATGTCGAAGTGTTGAAACAGCAAGAATTAG</canonical_amplicon>
		<polymorphic_amplicon>AGAATATGCCAATTTCTTCTCAATCACATCTGCATATTCACGGAACCCAATGGAGATAATACGATTGGCGAATAGGGATACGGTAGCTGCACATGCCATGCACCAGGTGTCTGGAAGTAAGAAGATAGGTCTTCGAGAAGTTTCTGGAGGAACTTGGAGAAGGKTGATTCAAAAAATTTTGAAGCCAATCCAATATCTGAATTCTAAACTTTTGTCTTATGTCGAAGTGTTGAAACAGCAAGAATTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39563</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>50972</contig_pos>
        <strand>+</strand>
        <context>CAGTATTTTA[G/T]AAATTTTGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTA</left_flank>
        <right_flank>AAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCAAATCGTTGCCAGCTGCTCATGATGGGGTACTGTACCACGTGGAATTGCAGGCAGATACGAAGCGTAGACTTCTTCGCGTCCGCACCAAGGAATATCATTCCAGAGTGTTGTGTGAATTTTCGCAAATGTGAGAGTTTCGAATTTTTTTTGACAAAAAATAACAAAATTTTGGACTTTTTGAACCCAAAAATTTCGATTTTTTCCATTATTTTTTAAAATGAAACTAGACGAAAAATAATCCAAAAAATTGACTTTTTGAGCCCAAAAATTTATTTTTAATTTCTTAATTCTCAGCGCGGAACACATCATTTTCGTTCTGGATTTCGGGAGATTTGTCAAGGATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATGTGTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTACATCAGAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATTTTCGAATTTTAGAATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGTTCCTTCTGGAATTTTCGGAATTTCAAGATTTTTGAGGATTTTCTGATTTTTAAAATTTTGAATTTTTGAAATTTTTAGAATTGTCAGTTTTCTTGGATTTTTTCAAGCTTTTCGAATGTTTTGAATTTTTTGAAAAAGCTTTTGAATACTTGGAATTTTCAAAATTTTTGGAATTTCTCGAAATTTCAGAAAGTTTAAAAAAATGTAATTTTTTGTGAGATCTGAAATTTTGAACCAATTTGAAACAATTTCGGTTTCGAAATATCCACAATTTCATCTGAAAATCTGGAACAATTGATCTGAATGTGGTAATTAGGGACTGAAAACTCAAAAATCGAATTTTGAAATTGAAAAAAACATCAACATTGAAAAATAAGAAAATTAAAA</canonical>
            <polymorphic>CTCAAATCGTTGCCAGCTGCTCATGATGGGGTACTGTACCACGTGGAATTGCAGGCAGATACGAAGCGTAGACTTCTTCGCGTCCGCACCAAGGAATATCATTCCAGAGTGTTGTGTGAATTTTCGCAAATGTGAGAGTTTCGAATTTTTTTTGACAAAAAATAACAAAATTTTGGACTTTTTGAACCCAAAAATTTCGATTTTTTCCATTATTTTTTAAAATGAAACTAGACGAAAAATAATCCAAAAAATTGACTTTTTGAGCCCAAAAATTTATTTTTAATTTCTTAATTCTCAGCGCGGAACACATCATTTTCGTTCTGGATTTCGGGAGATTTGTCAAGGATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATGTGTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTACATCAGAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAKAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATTTTCGAATTTTAGAATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGTTCCTTCTGGAATTTTCGGAATTTCAAGATTTTTGAGGATTTTCTGATTTTTAAAATTTTGAATTTTTGAAATTTTTAGAATTGTCAGTTTTCTTGGATTTTTTCAAGCTTTTCGAATGTTTTGAATTTTTTGAAAAAGCTTTTGAATACTTGGAATTTTCAAAATTTTTGGAATTTCTCGAAATTTCAGAAAGTTTAAAAAAATGTAATTTTTTGTGAGATCTGAAATTTTGAACCAATTTGAAACAATTTCGGTTTCGAAATATCCACAATTTCATCTGAAAATCTGGAACAATTGATCTGAATGTGGTAATTAGGGACTGAAAACTCAAAAATCGAATTTTGAAATTGAAAAAAACATCAACATTGAAAAATAAGAAAATTAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTTTGATGATAGAATGAAGTTTT</pcr_primer_p1>
		<pcr_primer_p2>AAATCAGAAAATCCTCAAAAATC</pcr_primer_p2>
		<pcr_amplicon_size>259</pcr_amplicon_size>
		<canonical_amplicon>TTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTACATCAGAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATTTTCGAATTTTAGAATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGTTCCTTCTGGAATTTTCGGAATTTCAAGATTTTTGAGGATTTTCTGATTT</canonical_amplicon>
		<polymorphic_amplicon>TTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTACATCAGAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAKAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATTTTCGAATTTTAGAATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGTTCCTTCTGGAATTTTCGGAATTTCAAGATTTTTGAGGATTTTCTGATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39564</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>51085</contig_pos>
        <strand>+</strand>
        <context>CGAAATTTTG[C/T]TCCTTCTGGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTG</left_flank>
        <right_flank>TCCTTCTGGAATTTTCGGAATTTCAAGATTTTTGAGGATTTTCTGATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTGAATTTTCGCAAATGTGAGAGTTTCGAATTTTTTTTGACAAAAAATAACAAAATTTTGGACTTTTTGAACCCAAAAATTTCGATTTTTTCCATTATTTTTTAAAATGAAACTAGACGAAAAATAATCCAAAAAATTGACTTTTTGAGCCCAAAAATTTATTTTTAATTTCTTAATTCTCAGCGCGGAACACATCATTTTCGTTCTGGATTTCGGGAGATTTGTCAAGGATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATGTGTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTACATCAGAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATTTTCGAATTTTAGAATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGTTCCTTCTGGAATTTTCGGAATTTCAAGATTTTTGAGGATTTTCTGATTTTTAAAATTTTGAATTTTTGAAATTTTTAGAATTGTCAGTTTTCTTGGATTTTTTCAAGCTTTTCGAATGTTTTGAATTTTTTGAAAAAGCTTTTGAATACTTGGAATTTTCAAAATTTTTGGAATTTCTCGAAATTTCAGAAAGTTTAAAAAAATGTAATTTTTTGTGAGATCTGAAATTTTGAACCAATTTGAAACAATTTCGGTTTCGAAATATCCACAATTTCATCTGAAAATCTGGAACAATTGATCTGAATGTGGTAATTAGGGACTGAAAACTCAAAAATCGAATTTTGAAATTGAAAAAAACATCAACATTGAAAAATAAGAAAATTAAAAAATCAAAAAAAATTGAACTAAATTTTGGACATTTTGGAAATTTTCAGATCAGAGAATTTGGAAATATCTAAATACTAACAAATTCTTGAAAAAAAAACTCTGAAAATCTTAAA</canonical>
            <polymorphic>GTGTGAATTTTCGCAAATGTGAGAGTTTCGAATTTTTTTTGACAAAAAATAACAAAATTTTGGACTTTTTGAACCCAAAAATTTCGATTTTTTCCATTATTTTTTAAAATGAAACTAGACGAAAAATAATCCAAAAAATTGACTTTTTGAGCCCAAAAATTTATTTTTAATTTCTTAATTCTCAGCGCGGAACACATCATTTTCGTTCTGGATTTCGGGAGATTTGTCAAGGATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATGTGTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTACATCAGAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATTTTCGAATTTTAGAATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGYTCCTTCTGGAATTTTCGGAATTTCAAGATTTTTGAGGATTTTCTGATTTTTAAAATTTTGAATTTTTGAAATTTTTAGAATTGTCAGTTTTCTTGGATTTTTTCAAGCTTTTCGAATGTTTTGAATTTTTTGAAAAAGCTTTTGAATACTTGGAATTTTCAAAATTTTTGGAATTTCTCGAAATTTCAGAAAGTTTAAAAAAATGTAATTTTTTGTGAGATCTGAAATTTTGAACCAATTTGAAACAATTTCGGTTTCGAAATATCCACAATTTCATCTGAAAATCTGGAACAATTGATCTGAATGTGGTAATTAGGGACTGAAAACTCAAAAATCGAATTTTGAAATTGAAAAAAACATCAACATTGAAAAATAAGAAAATTAAAAAATCAAAAAAAATTGAACTAAATTTTGGACATTTTGGAAATTTTCAGATCAGAGAATTTGGAAATATCTAAATACTAACAAATTCTTGAAAAAAAAACTCTGAAAATCTTAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGTAGTTTTTCTGATGTTTTG</pcr_primer_p1>
		<pcr_primer_p2>AATCCAAGAAAACTGACAATTC</pcr_primer_p2>
		<pcr_amplicon_size>209</pcr_amplicon_size>
		<canonical_amplicon>TTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATTTTCGAATTTTAGAATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGTTCCTTCTGGAATTTTCGGAATTTCAAGATTTTTGAGGATTTTCTGATTTTTAAAATTTTGAATTTTTGAAATTTTTAGAATTGTCAGTTTTCTTGGATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATTTTCGAATTTTAGAATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGYTCCTTCTGGAATTTTCGGAATTTCAAGATTTTTGAGGATTTTCTGATTTTTAAAATTTTGAATTTTTGAAATTTTTAGAATTGTCAGTTTTCTTGGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39565</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>51101</contig_pos>
        <strand></strand>
        <context>CTGGAATTTT[C/T]GGAATTYCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGTTCCTTCTGGAATTTT</left_flank>
        <right_flank>GGAATTTCAAGATTTTTGAGGATTTTCTGATTTTTAAAATTTTGAATTTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTGAGAGTTTCGAATTTTTTTTGACAAAAAATAACAAAATTTTGGACTTTTTGAACCCAAAAATTTCGATTTTTTCCATTATTTTTTAAAATGAAACTAGACGAAAAATAATCCAAAAAATTGACTTTTTGAGCCCAAAAATTTATTTTTAATTTCTTAATTCTCAGCGCGGAACACATCATTTTCGTTCTGGATTTCGGGAGATTTGTCAAGGATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATGTGTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTACATCAGAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATTTTCGAATTTTAGAATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGTTCCTTCTGGAATTTTCGGAATTTCAAGATTTTTGAGGATTTTCTGATTTTTAAAATTTTGAATTTTTGAAATTTTTAGAATTGTCAGTTTTCTTGGATTTTTTCAAGCTTTTCGAATGTTTTGAATTTTTTGAAAAAGCTTTTGAATACTTGGAATTTTCAAAATTTTTGGAATTTCTCGAAATTTCAGAAAGTTTAAAAAAATGTAATTTTTTGTGAGATCTGAAATTTTGAACCAATTTGAAACAATTTCGGTTTCGAAATATCCACAATTTCATCTGAAAATCTGGAACAATTGATCTGAATGTGGTAATTAGGGACTGAAAACTCAAAAATCGAATTTTGAAATTGAAAAAAACATCAACATTGAAAAATAAGAAAATTAAAAAATCAAAAAAAATTGAACTAAATTTTGGACATTTTGGAAATTTTCAGATCAGAGAATTTGGAAATATCTAAATACTAACAAATTCTTGAAAAAAAAACTCTGAAAATCTTAAAACAACTTTCTGAAACA</canonical>
            <polymorphic>ATGTGAGAGTTTCGAATTTTTTTTGACAAAAAATAACAAAATTTTGGACTTTTTGAACCCAAAAATTTCGATTTTTTCCATTATTTTTTAAAATGAAACTAGACGAAAAATAATCCAAAAAATTGACTTTTTGAGCCCAAAAATTTATTTTTAATTTCTTAATTCTCAGCGCGGAACACATCATTTTCGTTCTGGATTTCGGGAGATTTGTCAAGGATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATGTGTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTACATCAGAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATTTTCGAATTTTAGAATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGTTCCTTCTGGAATTTTYGGAATTTCAAGATTTTTGAGGATTTTCTGATTTTTAAAATTTTGAATTTTTGAAATTTTTAGAATTGTCAGTTTTCTTGGATTTTTTCAAGCTTTTCGAATGTTTTGAATTTTTTGAAAAAGCTTTTGAATACTTGGAATTTTCAAAATTTTTGGAATTTCTCGAAATTTCAGAAAGTTTAAAAAAATGTAATTTTTTGTGAGATCTGAAATTTTGAACCAATTTGAAACAATTTCGGTTTCGAAATATCCACAATTTCATCTGAAAATCTGGAACAATTGATCTGAATGTGGTAATTAGGGACTGAAAACTCAAAAATCGAATTTTGAAATTGAAAAAAACATCAACATTGAAAAATAAGAAAATTAAAAAATCAAAAAAAATTGAACTAAATTTTGGACATTTTGGAAATTTTCAGATCAGAGAATTTGGAAATATCTAAATACTAACAAATTCTTGAAAAAAAAACTCTGAAAATCTTAAAACAACTTTCTGAAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>320 144 132 95 69 56 50 35 27 22 22 17 6 5</canonical_bands>
                <polymorphic_bands>320 144 132 122 69 56 50 35 22 22 17 6 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGTAGTTTTTCTGATGTTTTG</pcr_primer_p1>
		<pcr_primer_p2>AATCCAAGAAAACTGACAATTC</pcr_primer_p2>
		<pcr_amplicon_size>209</pcr_amplicon_size>
		<canonical_amplicon>TTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATTTTCGAATTTTAGAATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGTTCCTTCTGGAATTTTCGGAATTTCAAGATTTTTGAGGATTTTCTGATTTTTAAAATTTTGAATTTTTGAAATTTTTAGAATTGTCAGTTTTCTTGGATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATTTTCGAATTTTAGAATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGTTCCTTCTGGAATTTTYGGAATTTCAAGATTTTTGAGGATTTTCTGATTTTTAAAATTTTGAATTTTTGAAATTTTTAGAATTGTCAGTTTTCTTGGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39566</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>51108</contig_pos>
        <strand>+</strand>
        <context>TTTYGGAATT[C/T]CAAGATTTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TAGATTTTTGAAATTTTCGAAATTTTGTTCCTTCTGGAATTTTCGGAATT</left_flank>
        <right_flank>CAAGATTTTTGAGGATTTTCTGATTTTTAAAATTTTGAATTTTTGAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTTTCGAATTTTTTTTGACAAAAAATAACAAAATTTTGGACTTTTTGAACCCAAAAATTTCGATTTTTTCCATTATTTTTTAAAATGAAACTAGACGAAAAATAATCCAAAAAATTGACTTTTTGAGCCCAAAAATTTATTTTTAATTTCTTAATTCTCAGCGCGGAACACATCATTTTCGTTCTGGATTTCGGGAGATTTGTCAAGGATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATGTGTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTACATCAGAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATTTTCGAATTTTAGAATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGTTCCTTCTGGAATTTTCGGAATTTCAAGATTTTTGAGGATTTTCTGATTTTTAAAATTTTGAATTTTTGAAATTTTTAGAATTGTCAGTTTTCTTGGATTTTTTCAAGCTTTTCGAATGTTTTGAATTTTTTGAAAAAGCTTTTGAATACTTGGAATTTTCAAAATTTTTGGAATTTCTCGAAATTTCAGAAAGTTTAAAAAAATGTAATTTTTTGTGAGATCTGAAATTTTGAACCAATTTGAAACAATTTCGGTTTCGAAATATCCACAATTTCATCTGAAAATCTGGAACAATTGATCTGAATGTGGTAATTAGGGACTGAAAACTCAAAAATCGAATTTTGAAATTGAAAAAAACATCAACATTGAAAAATAAGAAAATTAAAAAATCAAAAAAAATTGAACTAAATTTTGGACATTTTGGAAATTTTCAGATCAGAGAATTTGGAAATATCTAAATACTAACAAATTCTTGAAAAAAAAACTCTGAAAATCTTAAAACAACTTTCTGAAACATCAACCT</canonical>
            <polymorphic>AGTTTCGAATTTTTTTTGACAAAAAATAACAAAATTTTGGACTTTTTGAACCCAAAAATTTCGATTTTTTCCATTATTTTTTAAAATGAAACTAGACGAAAAATAATCCAAAAAATTGACTTTTTGAGCCCAAAAATTTATTTTTAATTTCTTAATTCTCAGCGCGGAACACATCATTTTCGTTCTGGATTTCGGGAGATTTGTCAAGGATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATGTGTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTACATCAGAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATTTTCGAATTTTAGAATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGTTCCTTCTGGAATTTTCGGAATTYCAAGATTTTTGAGGATTTTCTGATTTTTAAAATTTTGAATTTTTGAAATTTTTAGAATTGTCAGTTTTCTTGGATTTTTTCAAGCTTTTCGAATGTTTTGAATTTTTTGAAAAAGCTTTTGAATACTTGGAATTTTCAAAATTTTTGGAATTTCTCGAAATTTCAGAAAGTTTAAAAAAATGTAATTTTTTGTGAGATCTGAAATTTTGAACCAATTTGAAACAATTTCGGTTTCGAAATATCCACAATTTCATCTGAAAATCTGGAACAATTGATCTGAATGTGGTAATTAGGGACTGAAAACTCAAAAATCGAATTTTGAAATTGAAAAAAACATCAACATTGAAAAATAAGAAAATTAAAAAATCAAAAAAAATTGAACTAAATTTTGGACATTTTGGAAATTTTCAGATCAGAGAATTTGGAAATATCTAAATACTAACAAATTCTTGAAAAAAAAACTCTGAAAATCTTAAAACAACTTTCTGAAACATCAACCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>185 112 78 70 56 54 46 45 44 35 30 26 25 24 24 18 17 16 10 10 9 9 9 9 9 8 8 7 7</canonical_bands>
                <polymorphic_bands>185 112 78 70 56 54 46 45 44 44 30 26 25 24 24 18 17 16 10 10 9 9 9 9 8 8 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>186 185 154 153 136 109 51 18 8</canonical_bands>
                <polymorphic_bands>186 185 171 154 136 109 51 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTGTAGTTTTTCTGATGTTTTG</pcr_primer_p1>
		<pcr_primer_p2>AATCCAAGAAAACTGACAATTC</pcr_primer_p2>
		<pcr_amplicon_size>209</pcr_amplicon_size>
		<canonical_amplicon>TTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATTTTCGAATTTTAGAATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGTTCCTTCTGGAATTTTCGGAATTTCAAGATTTTTGAGGATTTTCTGATTTTTAAAATTTTGAATTTTTGAAATTTTTAGAATTGTCAGTTTTCTTGGATT</canonical_amplicon>
		<polymorphic_amplicon>TTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATTTTCGAATTTTAGAATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGTTCCTTCTGGAATTTTCGGAATTYCAAGATTTTTGAGGATTTTCTGATTTTTAAAATTTTGAATTTTTGAAATTTTTAGAATTGTCAGTTTTCTTGGATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39567</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>51136</contig_pos>
        <strand></strand>
        <context>TTCTGATTTT[T/C]AAAATTTTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCCTTCTGGAATTTTCGGAATTTCAAGATTTTTGAGGATTTTCTGATTTT</left_flank>
        <right_flank>AAAATTTTGAATTTTTGAAATTTTTAGAATTGTCAGTTTTCTTGGATTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAAAATTTTGGACTTTTTGAACCCAAAAATTTCGATTTTTTCCATTATTTTTTAAAATGAAACTAGACGAAAAATAATCCAAAAAATTGACTTTTTGAGCCCAAAAATTTATTTTTAATTTCTTAATTCTCAGCGCGGAACACATCATTTTCGTTCTGGATTTCGGGAGATTTGTCAAGGATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATGTGTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTACATCAGAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATTTTCGAATTTTAGAATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGTTCCTTCTGGAATTTTCGGAATTTCAAGATTTTTGAGGATTTTCTGATTTTTAAAATTTTGAATTTTTGAAATTTTTAGAATTGTCAGTTTTCTTGGATTTTTTCAAGCTTTTCGAATGTTTTGAATTTTTTGAAAAAGCTTTTGAATACTTGGAATTTTCAAAATTTTTGGAATTTCTCGAAATTTCAGAAAGTTTAAAAAAATGTAATTTTTTGTGAGATCTGAAATTTTGAACCAATTTGAAACAATTTCGGTTTCGAAATATCCACAATTTCATCTGAAAATCTGGAACAATTGATCTGAATGTGGTAATTAGGGACTGAAAACTCAAAAATCGAATTTTGAAATTGAAAAAAACATCAACATTGAAAAATAAGAAAATTAAAAAATCAAAAAAAATTGAACTAAATTTTGGACATTTTGGAAATTTTCAGATCAGAGAATTTGGAAATATCTAAATACTAACAAATTCTTGAAAAAAAAACTCTGAAAATCTTAAAACAACTTTCTGAAACATCAACCTATGACAAGTCAAAAACTCCAGAAAAAAT</canonical>
            <polymorphic>ACAAAATTTTGGACTTTTTGAACCCAAAAATTTCGATTTTTTCCATTATTTTTTAAAATGAAACTAGACGAAAAATAATCCAAAAAATTGACTTTTTGAGCCCAAAAATTTATTTTTAATTTCTTAATTCTCAGCGCGGAACACATCATTTTCGTTCTGGATTTCGGGAGATTTGTCAAGGATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATGTGTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTACATCAGAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATTTTCGAATTTTAGAATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGTTCCTTCTGGAATTTTCGGAATTTCAAGATTTTTGAGGATTTTCTGATTTTYAAAATTTTGAATTTTTGAAATTTTTAGAATTGTCAGTTTTCTTGGATTTTTTCAAGCTTTTCGAATGTTTTGAATTTTTTGAAAAAGCTTTTGAATACTTGGAATTTTCAAAATTTTTGGAATTTCTCGAAATTTCAGAAAGTTTAAAAAAATGTAATTTTTTGTGAGATCTGAAATTTTGAACCAATTTGAAACAATTTCGGTTTCGAAATATCCACAATTTCATCTGAAAATCTGGAACAATTGATCTGAATGTGGTAATTAGGGACTGAAAACTCAAAAATCGAATTTTGAAATTGAAAAAAACATCAACATTGAAAAATAAGAAAATTAAAAAATCAAAAAAAATTGAACTAAATTTTGGACATTTTGGAAATTTTCAGATCAGAGAATTTGGAAATATCTAAATACTAACAAATTCTTGAAAAAAAAACTCTGAAAATCTTAAAACAACTTTCTGAAACATCAACCTATGACAAGTCAAAAACTCCAGAAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>446 355 145 54</canonical_bands>
                <polymorphic_bands>591 355 54</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>375 187 145 114 63 55 53 8</canonical_bands>
                <polymorphic_bands>520 187 114 63 55 53 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTTGTAGTTTTTCTGATGTTTT</pcr_primer_p1>
		<pcr_primer_p2>TGAAAATTCCAAGTATTCAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>273</pcr_amplicon_size>
		<canonical_amplicon>AATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATTTTCGAATTTTAGAATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGTTCCTTCTGGAATTTTCGGAATTTCAAGATTTTTGAGGATTTTCTGATTTTTAAAATTTTGAATTTTTGAAATTTTTAGAATTGTCAGTTTTCTTGGATTTTTTCAAGCTTTTCGAATGTTTTGAATTTTTTGAAAAAGCTTTTGAATACTTGGAATTTTCA</canonical_amplicon>
		<polymorphic_amplicon>AATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATTTTCGAATTTTAGAATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGTTCCTTCTGGAATTTTCGGAATTTCAAGATTTTTGAGGATTTTCTGATTTTYAAAATTTTGAATTTTTGAAATTTTTAGAATTGTCAGTTTTCTTGGATTTTTTCAAGCTTTTCGAATGTTTTGAATTTTTTGAAAAAGCTTTTGAATACTTGGAATTTTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39568</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>51316</contig_pos>
        <strand>+</strand>
        <context>TCTGAAATTT[C/T]GAACCAATTT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTTCAGAAAGTTTAAAAAAATGTAATTTTTTGTGAGATCTGAAATTT</left_flank>
        <right_flank>GAACCAATTTGAAACAATTTCGGTTTCGAAATATCCACAATTTCATCTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATGTGTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTACATCAGAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATTTTCGAATTTTAGAATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGTTCCTTCTGGAATTTTCGGAATTTCAAGATTTTTGAGGATTTTCTGATTTTTAAAATTTTGAATTTTTGAAATTTTTAGAATTGTCAGTTTTCTTGGATTTTTTCAAGCTTTTCGAATGTTTTGAATTTTTTGAAAAAGCTTTTGAATACTTGGAATTTTCAAAATTTTTGGAATTTCTCGAAATTTCAGAAAGTTTAAAAAAATGTAATTTTTTGTGAGATCTGAAATTTTGAACCAATTTGAAACAATTTCGGTTTCGAAATATCCACAATTTCATCTGAAAATCTGGAACAATTGATCTGAATGTGGTAATTAGGGACTGAAAACTCAAAAATCGAATTTTGAAATTGAAAAAAACATCAACATTGAAAAATAAGAAAATTAAAAAATCAAAAAAAATTGAACTAAATTTTGGACATTTTGGAAATTTTCAGATCAGAGAATTTGGAAATATCTAAATACTAACAAATTCTTGAAAAAAAAACTCTGAAAATCTTAAAACAACTTTCTGAAACATCAACCTATGACAAGTCAAAAACTCCAGAAAAAATCAAAATTAATAAAATTTCCGTAGCAATTTTTGAAAAAAATTCTGAAAATCTAAAAACCACTTCTTGAATCAACAACTTTACAAAAGTCAAAAAATCTGAAATCTGGCTCATTGATTTTAAAAAAGTTCAAATTTCAAAACTAATAAAAAAGACAAAACAAAGAATACAAAAAGAACCATT</canonical>
            <polymorphic>GATGGACAGGAGGTCAATATTGGATGAAAATTGAACTTTTATGTGTTTTTGATTTGGTATTCTTTGATGATAGAATGAAGTTTTTTGGATTCGGCTGCTACATCAGAAAAAAATTTTTATCAGGAAAAATACAGTAGTTTTGAAACAGTATTTTAGAAATTTTGTAGTTTTTCTGATGTTTTGAAAGTTCGGAAATATTGGAAATTTTCGAATTTTAGAATTTTTTGGAATTTTCGTTTTTTAGATTTTTGAAATTTTCGAAATTTTGTTCCTTCTGGAATTTTCGGAATTTCAAGATTTTTGAGGATTTTCTGATTTTTAAAATTTTGAATTTTTGAAATTTTTAGAATTGTCAGTTTTCTTGGATTTTTTCAAGCTTTTCGAATGTTTTGAATTTTTTGAAAAAGCTTTTGAATACTTGGAATTTTCAAAATTTTTGGAATTTCTCGAAATTTCAGAAAGTTTAAAAAAATGTAATTTTTTGTGAGATCTGAAATTTYGAACCAATTTGAAACAATTTCGGTTTCGAAATATCCACAATTTCATCTGAAAATCTGGAACAATTGATCTGAATGTGGTAATTAGGGACTGAAAACTCAAAAATCGAATTTTGAAATTGAAAAAAACATCAACATTGAAAAATAAGAAAATTAAAAAATCAAAAAAAATTGAACTAAATTTTGGACATTTTGGAAATTTTCAGATCAGAGAATTTGGAAATATCTAAATACTAACAAATTCTTGAAAAAAAAACTCTGAAAATCTTAAAACAACTTTCTGAAACATCAACCTATGACAAGTCAAAAACTCCAGAAAAAATCAAAATTAATAAAATTTCCGTAGCAATTTTTGAAAAAAATTCTGAAAATCTAAAAACCACTTCTTGAATCAACAACTTTACAAAAGTCAAAAAATCTGAAATCTGGCTCATTGATTTTAAAAAAGTTCAAATTTCAAAACTAATAAAAAAGACAAAACAAAGAATACAAAAAGAACCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTGTCAGTTTTCTTGGATTTT</pcr_primer_p1>
		<pcr_primer_p2>AGTTTTCAGTCCCTAATTACCAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATTGTCAGTTTTCTTGGATTTTTTCAAGCTTTTCGAATGTTTTGAATTTTTTGAAAAAGCTTTTGAATACTTGGAATTTTCAAAATTTTTGGAATTTCTCGAAATTTCAGAAAGTTTAAAAAAATGTAATTTTTTGTGAGATCTGAAATTTTGAACCAATTTGAAACAATTTCGGTTTCGAAATATCCACAATTTCATCTGAAAATCTGGAACAATTGATCTGAATGTGGTAATTAGGGACTGAAAACT</canonical_amplicon>
		<polymorphic_amplicon>AATTGTCAGTTTTCTTGGATTTTTTCAAGCTTTTCGAATGTTTTGAATTTTTTGAAAAAGCTTTTGAATACTTGGAATTTTCAAAATTTTTGGAATTTCTCGAAATTTCAGAAAGTTTAAAAAAATGTAATTTTTTGTGAGATCTGAAATTTYGAACCAATTTGAAACAATTTCGGTTTCGAAATATCCACAATTTCATCTGAAAATCTGGAACAATTGATCTGAATGTGGTAATTAGGGACTGAAAACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39569</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>102638</contig_pos>
        <strand>+</strand>
        <context>CGGTGCGGCG[A/G]TTCGTCGACC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AACCTTTGAACTTACGATGTTGCTGAGCTTGAAGATGCGTCGGTGCGGCG</left_flank>
        <right_flank>TTCGTCGACCATTGCGTACACGACGGAACTGGCCGTGGATGTAGTTTTTG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTGCACAAAATTGTTCTCTAAATATTATTCGCTTCATCTGTGATATTTCAACATCAAAAAATGGAAGAACGGCTCACCGGCGGCCCACCGGCGGCCGACCACGGTCCCAACTCTTTCCCCCACAATTTTACTTAGAAATATAACATCATTTTCTATCATTTCCTCCAACACTGTCCTTCTAATTTTATAGTCATTAATGACAAATGCAATGTATAAAGGAAACCCATAAAACTTTTCCTCTCCCTCAAATTTCACAAAATTTTCTTATATATTTCTATTTCCCTTTTGAACAATCTATGTATACAAATGTTTGCTTACATACCCATACATACATACAAATTCACTATCCACCGCCCGAAGGAAATGATAAGCAATTGGCGGGGGGTAAACAGAAAAATGAAGGAGAGAGAAAGAGGAAAATGTTGCCAAAAAGCCCTAATAAAAGAAAAACCTTTGAACTTACGATGTTGCTGAGCTTGAAGATGCGTCGGTGCGGCGATTCGTCGACCATTGCGTACACGACGGAACTGGCCGTGGATGTAGTTTTTGAGATCTTCGGCCACGTCCGTCGCGGAGACACGGATGCACTGAAAAAGTCAAGATTGGTTGAATTAGGTTAGATAAGTTTAAAGGGACATTATGGGTTTAAAGGACTACGGTTTTTTTTTGAACTGTGATTGCTTATTCAGAAAGTAGGTATAAATCCAGAAGACAAGTTTTGTTGGTCGGTAGCCGACTTCTTGGCAGCATAGCTCACGAATTTTCCAATAAGAAATTCAAACACTTGATACGTTTTAAGCGGTACTACAGTTTCCTGGTCTACTAACAACAGACACATGAAACAGAACTTACAGGTTAGTATGATTAGCTTTAACGGCATATAGCTGATCAACTTTAAGCCAATTTATCTCGGTTCATGTGAAAGATATTAAAAAGTGATTGACTAACACAACAACTGCCATATTACGCTAAAAATTTTATTAGTTGATCATTTTTTGA</canonical>
            <polymorphic>ATTGCACAAAATTGTTCTCTAAATATTATTCGCTTCATCTGTGATATTTCAACATCAAAAAATGGAAGAACGGCTCACCGGCGGCCCACCGGCGGCCGACCACGGTCCCAACTCTTTCCCCCACAATTTTACTTAGAAATATAACATCATTTTCTATCATTTCCTCCAACACTGTCCTTCTAATTTTATAGTCATTAATGACAAATGCAATGTATAAAGGAAACCCATAAAACTTTTCCTCTCCCTCAAATTTCACAAAATTTTCTTATATATTTCTATTTCCCTTTTGAACAATCTATGTATACAAATGTTTGCTTACATACCCATACATACATACAAATTCACTATCCACCGCCCGAAGGAAATGATAAGCAATTGGCGGGGGGTAAACAGAAAAATGAAGGAGAGAGAAAGAGGAAAATGTTGCCAAAAAGCCCTAATAAAAGAAAAACCTTTGAACTTACGATGTTGCTGAGCTTGAAGATGCGTCGGTGCGGCGRTTCGTCGACCATTGCGTACACGACGGAACTGGCCGTGGATGTAGTTTTTGAGATCTTCGGCCACGTCCGTCGCGGAGACACGGATGCACTGAAAAAGTCAAGATTGGTTGAATTAGGTTAGATAAGTTTAAAGGGACATTATGGGTTTAAAGGACTACGGTTTTTTTTTGAACTGTGATTGCTTATTCAGAAAGTAGGTATAAATCCAGAAGACAAGTTTTGTTGGTCGGTAGCCGACTTCTTGGCAGCATAGCTCACGAATTTTCCAATAAGAAATTCAAACACTTGATACGTTTTAAGCGGTACTACAGTTTCCTGGTCTACTAACAACAGACACATGAAACAGAACTTACAGGTTAGTATGATTAGCTTTAACGGCATATAGCTGATCAACTTTAAGCCAATTTATCTCGGTTCATGTGAAAGATATTAAAAAGTGATTGACTAACACAACAACTGCCATATTACGCTAAAAATTTTATTAGTTGATCATTTTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAAATGAAGGAGAGAGAAAGAG</pcr_primer_p1>
		<pcr_primer_p2>CCATAATGTCCCTTTAAACTTATC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>AAAAATGAAGGAGAGAGAAAGAGGAAAATGTTGCCAAAAAGCCCTAATAAAAGAAAAACCTTTGAACTTACGATGTTGCTGAGCTTGAAGATGCGTCGGTGCGGCGATTCGTCGACCATTGCGTACACGACGGAACTGGCCGTGGATGTAGTTTTTGAGATCTTCGGCCACGTCCGTCGCGGAGACACGGATGCACTGAAAAAGTCAAGATTGGTTGAATTAGGTTAGATAAGTTTAAAGGGACATTATGG</canonical_amplicon>
		<polymorphic_amplicon>AAAAATGAAGGAGAGAGAAAGAGGAAAATGTTGCCAAAAAGCCCTAATAAAAGAAAAACCTTTGAACTTACGATGTTGCTGAGCTTGAAGATGCGTCGGTGCGGCGRTTCGTCGACCATTGCGTACACGACGGAACTGGCCGTGGATGTAGTTTTTGAGATCTTCGGCCACGTCCGTCGCGGAGACACGGATGCACTGAAAAAGTCAAGATTGGTTGAATTAGGTTAGATAAGTTTAAAGGGACATTATGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39570</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>105900</contig_pos>
        <strand></strand>
        <context>tttacgagca[A/G]ctttgactct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAGATGAACTATGTAGTACCGGTCAATAAACAGGACGTTTTACGAGCA</left_flank>
        <right_flank>CTTTGACTCTATTTATCTCGGTTTCTGTAAAAGATATCAAGAAATGGCGA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTTTGAATGGCGAGAAAATGAAATTTTCCTACAAAACTGGGGCCTTCGAGAACATTTAACAAAGAATCTCTAAATTTAAAAAAAGCTAGTGAAACAGGAAAAAAATTTAGTAACAAGAAACCGCAGAAAAAAATGGCAAAAAAGCCAACCAAAAACCGATAGTAAAAATTTAACGAAAAGAGAAGAATAAGAAAACTGCGAAAAAGTGATAAGAATTTTTTTTCGTTGATAAAAAACGAGCGAAAACGTACCGATTGGTTGCGACATTGGCGCTCCTCTCGGATGATGTGATGATGCGGACTGTTGACTGTGCGATGGAGATGGAGCCGGCTGGCCGGCGGTCGATGAACGCGAGTAGTAGTAGCCACCGGGTGATGGGCGGCTGAAAAATGTATTTTTAGAAGAATATGGGGTTCAAGTTAGCAGTAGTTTAGAAGTCACAAAAATTGAAGATGAACTATGTAGTACCGGTCAATAAACAGGACGTTTTACGAGCAACTTTGACTCTATTTATCTCGGTTTCTGTAAAAGATATCAAGAAATGGCGAGATGGTAAAATGTTTTTGATTTTGTAATGAACATTTTGCTAGTTAAACATTTTTGATATCTCTTACAGGAAATGAGATACAGTACCGGTCAATAAAATACAAAAACATATTTTTCAGTTGATTTACAGCCATTTTCAGAACTCTGGAGCTCGGCTGCCAAGTTGCCAACCACTTTGAAAATTATGAAGGGTATAAAACAGGCCTAGATTGGAAACTTTGCATTTACAGAATTTTGGAAAATTCCTAGTTTTTCTGCTATTTGCCGATGACTGAAAGACACTTTCAGTACAAAAAAACTGCCCAGCACACTCGTTTGATACTCAGCCAGCGGAAAAAGCGGAAGCCGAATTTCTCGGTCTAGTAAATCGCATTAATCGACTGTATTTTAAATAACAACAAAACTAAATTTCCCAATAAGCCCGAAAAAAACATTCTGACAATGAAACCGAA</canonical>
            <polymorphic>ATGTTTGAATGGCGAGAAAATGAAATTTTCCTACAAAACTGGGGCCTTCGAGAACATTTAACAAAGAATCTCTAAATTTAAAAAAAGCTAGTGAAACAGGAAAAAAATTTAGTAACAAGAAACCGCAGAAAAAAATGGCAAAAAAGCCAACCAAAAACCGATAGTAAAAATTTAACGAAAAGAGAAGAATAAGAAAACTGCGAAAAAGTGATAAGAATTTTTTTTCGTTGATAAAAAACGAGCGAAAACGTACCGATTGGTTGCGACATTGGCGCTCCTCTCGGATGATGTGATGATGCGGACTGTTGACTGTGCGATGGAGATGGAGCCGGCTGGCCGGCGGTCGATGAACGCGAGTAGTAGTAGCCACCGGGTGATGGGCGGCTGAAAAATGTATTTTTAGAAGAATATGGGGTTCAAGTTAGCAGTAGTTTAGAAGTCACAAAAATTGAAGATGAACTATGTAGTACCGGTCAATAAACAGGACGTTTTACGAGCARCTTTGACTCTATTTATCTCGGTTTCTGTAAAAGATATCAAGAAATGGCGAGATGGTAAAATGTTTTTGATTTTGTAATGAACATTTTGCTAGTTAAACATTTTTGATATCTCTTACAGGAAATGAGATACAGTACCGGTCAATAAAATACAAAAACATATTTTTCAGTTGATTTACAGCCATTTTCAGAACTCTGGAGCTCGGCTGCCAAGTTGCCAACCACTTTGAAAATTATGAAGGGTATAAAACAGGCCTAGATTGGAAACTTTGCATTTACAGAATTTTGGAAAATTCCTAGTTTTTCTGCTATTTGCCGATGACTGAAAGACACTTTCAGTACAAAAAAACTGCCCAGCACACTCGTTTGATACTCAGCCAGCGGAAAAAGCGGAAGCCGAATTTCTCGGTCTAGTAAATCGCATTAATCGACTGTATTTTAAATAACAACAAAACTAAATTTCCCAATAAGCCCGAAAAAAACATTCTGACAATGAAACCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCACAAAAATTGAAGATGAACT</pcr_primer_p1>
		<pcr_primer_p2>GGCTGAGTATCAAACGAGTG</pcr_primer_p2>
		<pcr_amplicon_size>438</pcr_amplicon_size>
		<canonical_amplicon>GTCACAAAAATTGAAGATGAACTATGTAGTACCGGTCAATAAACAGGACGTTTTACGAGCAACTTTGACTCTATTTATCTCGGTTTCTGTAAAAGATATCAAGAAATGGCGAGATGGTAAAATGTTTTTGATTTTGTAATGAACATTTTGCTAGTTAAACATTTTTGATATCTCTTACAGGAAATGAGATACAGTACCGGTCAATAAAATACAAAAACATATTTTTCAGTTGATTTACAGCCATTTTCAGAACTCTGGAGCTCGGCTGCCAAGTTGCCAACCACTTTGAAAATTATGAAGGGTATAAAACAGGCCTAGATTGGAAACTTTGCATTTACAGAATTTTGGAAAATTCCTAGTTTTTCTGCTATTTGCCGATGACTGAAAGACACTTTCAGTACAAAAAAACTGCCCAGCACACTCGTTTGATACTCAGCC</canonical_amplicon>
		<polymorphic_amplicon>GTCACAAAAATTGAAGATGAACTATGTAGTACCGGTCAATAAACAGGACGTTTTACGAGCARCTTTGACTCTATTTATCTCGGTTTCTGTAAAAGATATCAAGAAATGGCGAGATGGTAAAATGTTTTTGATTTTGTAATGAACATTTTGCTAGTTAAACATTTTTGATATCTCTTACAGGAAATGAGATACAGTACCGGTCAATAAAATACAAAAACATATTTTTCAGTTGATTTACAGCCATTTTCAGAACTCTGGAGCTCGGCTGCCAAGTTGCCAACCACTTTGAAAATTATGAAGGGTATAAAACAGGCCTAGATTGGAAACTTTGCATTTACAGAATTTTGGAAAATTCCTAGTTTTTCTGCTATTTGCCGATGACTGAAAGACACTTTCAGTACAAAAAAACTGCCCAGCACACTCGTTTGATACTCAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39571</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>105955</contig_pos>
        <strand></strand>
        <context>tggcgagatg[G/A]taaaatgttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GACTCTATTTATCTCGGTTTCTGTAAAAGATATCAAGAAATGGCGAGATG</left_flank>
        <right_flank>TAAAATGTTTTTGATTTTGTAATGAACATTTTGCTAGTTAAACATTTTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTAACAAAGAATCTCTAAATTTAAAAAAAGCTAGTGAAACAGGAAAAAAATTTAGTAACAAGAAACCGCAGAAAAAAATGGCAAAAAAGCCAACCAAAAACCGATAGTAAAAATTTAACGAAAAGAGAAGAATAAGAAAACTGCGAAAAAGTGATAAGAATTTTTTTTCGTTGATAAAAAACGAGCGAAAACGTACCGATTGGTTGCGACATTGGCGCTCCTCTCGGATGATGTGATGATGCGGACTGTTGACTGTGCGATGGAGATGGAGCCGGCTGGCCGGCGGTCGATGAACGCGAGTAGTAGTAGCCACCGGGTGATGGGCGGCTGAAAAATGTATTTTTAGAAGAATATGGGGTTCAAGTTAGCAGTAGTTTAGAAGTCACAAAAATTGAAGATGAACTATGTAGTACCGGTCAATAAACAGGACGTTTTACGAGCAACTTTGACTCTATTTATCTCGGTTTCTGTAAAAGATATCAAGAAATGGCGAGATGGTAAAATGTTTTTGATTTTGTAATGAACATTTTGCTAGTTAAACATTTTTGATATCTCTTACAGGAAATGAGATACAGTACCGGTCAATAAAATACAAAAACATATTTTTCAGTTGATTTACAGCCATTTTCAGAACTCTGGAGCTCGGCTGCCAAGTTGCCAACCACTTTGAAAATTATGAAGGGTATAAAACAGGCCTAGATTGGAAACTTTGCATTTACAGAATTTTGGAAAATTCCTAGTTTTTCTGCTATTTGCCGATGACTGAAAGACACTTTCAGTACAAAAAAACTGCCCAGCACACTCGTTTGATACTCAGCCAGCGGAAAAAGCGGAAGCCGAATTTCTCGGTCTAGTAAATCGCATTAATCGACTGTATTTTAAATAACAACAAAACTAAATTTCCCAATAAGCCCGAAAAAAACATTCTGACAATGAAACCGAAAAAATCAGTTTTTTAGGGAAAACAAGTTCTCGGGTCAATTTCTTTGAAAATTTGA</canonical>
            <polymorphic>ATTTAACAAAGAATCTCTAAATTTAAAAAAAGCTAGTGAAACAGGAAAAAAATTTAGTAACAAGAAACCGCAGAAAAAAATGGCAAAAAAGCCAACCAAAAACCGATAGTAAAAATTTAACGAAAAGAGAAGAATAAGAAAACTGCGAAAAAGTGATAAGAATTTTTTTTCGTTGATAAAAAACGAGCGAAAACGTACCGATTGGTTGCGACATTGGCGCTCCTCTCGGATGATGTGATGATGCGGACTGTTGACTGTGCGATGGAGATGGAGCCGGCTGGCCGGCGGTCGATGAACGCGAGTAGTAGTAGCCACCGGGTGATGGGCGGCTGAAAAATGTATTTTTAGAAGAATATGGGGTTCAAGTTAGCAGTAGTTTAGAAGTCACAAAAATTGAAGATGAACTATGTAGTACCGGTCAATAAACAGGACGTTTTACGAGCAACTTTGACTCTATTTATCTCGGTTTCTGTAAAAGATATCAAGAAATGGCGAGATGRTAAAATGTTTTTGATTTTGTAATGAACATTTTGCTAGTTAAACATTTTTGATATCTCTTACAGGAAATGAGATACAGTACCGGTCAATAAAATACAAAAACATATTTTTCAGTTGATTTACAGCCATTTTCAGAACTCTGGAGCTCGGCTGCCAAGTTGCCAACCACTTTGAAAATTATGAAGGGTATAAAACAGGCCTAGATTGGAAACTTTGCATTTACAGAATTTTGGAAAATTCCTAGTTTTTCTGCTATTTGCCGATGACTGAAAGACACTTTCAGTACAAAAAAACTGCCCAGCACACTCGTTTGATACTCAGCCAGCGGAAAAAGCGGAAGCCGAATTTCTCGGTCTAGTAAATCGCATTAATCGACTGTATTTTAAATAACAACAAAACTAAATTTCCCAATAAGCCCGAAAAAAACATTCTGACAATGAAACCGAAAAAATCAGTTTTTTAGGGAAAACAAGTTCTCGGGTCAATTTCTTTGAAAATTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCACAAAAATTGAAGATGAACT</pcr_primer_p1>
		<pcr_primer_p2>GGCTGAGTATCAAACGAGTG</pcr_primer_p2>
		<pcr_amplicon_size>438</pcr_amplicon_size>
		<canonical_amplicon>GTCACAAAAATTGAAGATGAACTATGTAGTACCGGTCAATAAACAGGACGTTTTACGAGCAACTTTGACTCTATTTATCTCGGTTTCTGTAAAAGATATCAAGAAATGGCGAGATGGTAAAATGTTTTTGATTTTGTAATGAACATTTTGCTAGTTAAACATTTTTGATATCTCTTACAGGAAATGAGATACAGTACCGGTCAATAAAATACAAAAACATATTTTTCAGTTGATTTACAGCCATTTTCAGAACTCTGGAGCTCGGCTGCCAAGTTGCCAACCACTTTGAAAATTATGAAGGGTATAAAACAGGCCTAGATTGGAAACTTTGCATTTACAGAATTTTGGAAAATTCCTAGTTTTTCTGCTATTTGCCGATGACTGAAAGACACTTTCAGTACAAAAAAACTGCCCAGCACACTCGTTTGATACTCAGCC</canonical_amplicon>
		<polymorphic_amplicon>GTCACAAAAATTGAAGATGAACTATGTAGTACCGGTCAATAAACAGGACGTTTTACGAGCAACTTTGACTCTATTTATCTCGGTTTCTGTAAAAGATATCAAGAAATGGCGAGATGRTAAAATGTTTTTGATTTTGTAATGAACATTTTGCTAGTTAAACATTTTTGATATCTCTTACAGGAAATGAGATACAGTACCGGTCAATAAAATACAAAAACATATTTTTCAGTTGATTTACAGCCATTTTCAGAACTCTGGAGCTCGGCTGCCAAGTTGCCAACCACTTTGAAAATTATGAAGGGTATAAAACAGGCCTAGATTGGAAACTTTGCATTTACAGAATTTTGGAAAATTCCTAGTTTTTCTGCTATTTGCCGATGACTGAAAGACACTTTCAGTACAAAAAAACTGCCCAGCACACTCGTTTGATACTCAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39572</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>106091</contig_pos>
        <strand></strand>
        <context>attttcagaa[C/T]tctggagctc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATAAAATACAAAAACATATTTTTCAGTTGATTTACAGCCATTTTCAGAA</left_flank>
        <right_flank>TCTGGAGCTCGGCTGCCAAGTTGCCAACCACTTTGAAAATTATGAAGGGT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAAACTGCGAAAAAGTGATAAGAATTTTTTTTCGTTGATAAAAAACGAGCGAAAACGTACCGATTGGTTGCGACATTGGCGCTCCTCTCGGATGATGTGATGATGCGGACTGTTGACTGTGCGATGGAGATGGAGCCGGCTGGCCGGCGGTCGATGAACGCGAGTAGTAGTAGCCACCGGGTGATGGGCGGCTGAAAAATGTATTTTTAGAAGAATATGGGGTTCAAGTTAGCAGTAGTTTAGAAGTCACAAAAATTGAAGATGAACTATGTAGTACCGGTCAATAAACAGGACGTTTTACGAGCAACTTTGACTCTATTTATCTCGGTTTCTGTAAAAGATATCAAGAAATGGCGAGATGGTAAAATGTTTTTGATTTTGTAATGAACATTTTGCTAGTTAAACATTTTTGATATCTCTTACAGGAAATGAGATACAGTACCGGTCAATAAAATACAAAAACATATTTTTCAGTTGATTTACAGCCATTTTCAGAACTCTGGAGCTCGGCTGCCAAGTTGCCAACCACTTTGAAAATTATGAAGGGTATAAAACAGGCCTAGATTGGAAACTTTGCATTTACAGAATTTTGGAAAATTCCTAGTTTTTCTGCTATTTGCCGATGACTGAAAGACACTTTCAGTACAAAAAAACTGCCCAGCACACTCGTTTGATACTCAGCCAGCGGAAAAAGCGGAAGCCGAATTTCTCGGTCTAGTAAATCGCATTAATCGACTGTATTTTAAATAACAACAAAACTAAATTTCCCAATAAGCCCGAAAAAAACATTCTGACAATGAAACCGAAAAAATCAGTTTTTTAGGGAAAACAAGTTCTCGGGTCAATTTCTTTGAAAATTTGATACGAAATGATTGTGTTAAAGAACAAGTCATTGATAAACCGCATTTGAATCAAAATATTCAAATCACAAAGTGATTGAAACAGAAAAAAAAATGAGCTGTGGGCAACTTAAAAATATAACTTTCCGGAAGAATTTT</canonical>
            <polymorphic>AGAAAACTGCGAAAAAGTGATAAGAATTTTTTTTCGTTGATAAAAAACGAGCGAAAACGTACCGATTGGTTGCGACATTGGCGCTCCTCTCGGATGATGTGATGATGCGGACTGTTGACTGTGCGATGGAGATGGAGCCGGCTGGCCGGCGGTCGATGAACGCGAGTAGTAGTAGCCACCGGGTGATGGGCGGCTGAAAAATGTATTTTTAGAAGAATATGGGGTTCAAGTTAGCAGTAGTTTAGAAGTCACAAAAATTGAAGATGAACTATGTAGTACCGGTCAATAAACAGGACGTTTTACGAGCAACTTTGACTCTATTTATCTCGGTTTCTGTAAAAGATATCAAGAAATGGCGAGATGGTAAAATGTTTTTGATTTTGTAATGAACATTTTGCTAGTTAAACATTTTTGATATCTCTTACAGGAAATGAGATACAGTACCGGTCAATAAAATACAAAAACATATTTTTCAGTTGATTTACAGCCATTTTCAGAAYTCTGGAGCTCGGCTGCCAAGTTGCCAACCACTTTGAAAATTATGAAGGGTATAAAACAGGCCTAGATTGGAAACTTTGCATTTACAGAATTTTGGAAAATTCCTAGTTTTTCTGCTATTTGCCGATGACTGAAAGACACTTTCAGTACAAAAAAACTGCCCAGCACACTCGTTTGATACTCAGCCAGCGGAAAAAGCGGAAGCCGAATTTCTCGGTCTAGTAAATCGCATTAATCGACTGTATTTTAAATAACAACAAAACTAAATTTCCCAATAAGCCCGAAAAAAACATTCTGACAATGAAACCGAAAAAATCAGTTTTTTAGGGAAAACAAGTTCTCGGGTCAATTTCTTTGAAAATTTGATACGAAATGATTGTGTTAAAGAACAAGTCATTGATAAACCGCATTTGAATCAAAATATTCAAATCACAAAGTGATTGAAACAGAAAAAAAAATGAGCTGTGGGCAACTTAAAAATATAACTTTCCGGAAGAATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTCACAAAAATTGAAGATGAACT</pcr_primer_p1>
		<pcr_primer_p2>GGCTGAGTATCAAACGAGTG</pcr_primer_p2>
		<pcr_amplicon_size>438</pcr_amplicon_size>
		<canonical_amplicon>GTCACAAAAATTGAAGATGAACTATGTAGTACCGGTCAATAAACAGGACGTTTTACGAGCAACTTTGACTCTATTTATCTCGGTTTCTGTAAAAGATATCAAGAAATGGCGAGATGGTAAAATGTTTTTGATTTTGTAATGAACATTTTGCTAGTTAAACATTTTTGATATCTCTTACAGGAAATGAGATACAGTACCGGTCAATAAAATACAAAAACATATTTTTCAGTTGATTTACAGCCATTTTCAGAACTCTGGAGCTCGGCTGCCAAGTTGCCAACCACTTTGAAAATTATGAAGGGTATAAAACAGGCCTAGATTGGAAACTTTGCATTTACAGAATTTTGGAAAATTCCTAGTTTTTCTGCTATTTGCCGATGACTGAAAGACACTTTCAGTACAAAAAAACTGCCCAGCACACTCGTTTGATACTCAGCC</canonical_amplicon>
		<polymorphic_amplicon>GTCACAAAAATTGAAGATGAACTATGTAGTACCGGTCAATAAACAGGACGTTTTACGAGCAACTTTGACTCTATTTATCTCGGTTTCTGTAAAAGATATCAAGAAATGGCGAGATGGTAAAATGTTTTTGATTTTGTAATGAACATTTTGCTAGTTAAACATTTTTGATATCTCTTACAGGAAATGAGATACAGTACCGGTCAATAAAATACAAAAACATATTTTTCAGTTGATTTACAGCCATTTTCAGAAYTCTGGAGCTCGGCTGCCAAGTTGCCAACCACTTTGAAAATTATGAAGGGTATAAAACAGGCCTAGATTGGAAACTTTGCATTTACAGAATTTTGGAAAATTCCTAGTTTTTCTGCTATTTGCCGATGACTGAAAGACACTTTCAGTACAAAAAAACTGCCCAGCACACTCGTTTGATACTCAGCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39573</snp_id>
        <super_contig>c014000805.Contig1</super_contig>
        <contig_pos>123047</contig_pos>
        <strand>+</strand>
        <context>CCGCACTTCA[C/G]CTAATTTCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TCGAAATGTCCCGGAGCCAAAAAACTCATAGTGCGCTCCACCGCACTTCA</left_flank>
        <right_flank>CTAATTTCAATCAAACAACTTTTTGATAAGCTATTTACCCAACATTTACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCAGAAATTCGAAAATCAGGGATTTTTGATTAGAAATTCGAGACTTTAGAAACTCAAAAAAATTGCATTCTCTTTTCAAGAAACATGTATTCTGTCATGTAGAAACTCGGAAATTCAGAAAATCGGTTATTTTTTTTTTAACCGACAAGACTTAACAGAAATTATCAAAAAACTGAAAAAAAAGTACGTCTGTTTTATCAAAAGTGGTCTTCAAATAGATGTGGGGTTCTATTAGAGAAAATCCGGTACCCAAAAATTCTGACTTTAGGAAAATCAAAAGTTTCGGGCACTCGGGAAATTCTGAAATTAGAAAACAAAAACCAGGAGGTTGAGCCCCCGGCAGGGGGCTCAAACCGATTGGTGTGTTCTATCAGAAAAAGCACATTTGAAAACCCTAAAATAGTTTTTGTAGTCTAAAATTCGTCCATTCGCCCGTATTACCACACTTTCGAAATGTCCCGGAGCCAAAAAACTCATAGTGCGCTCCACCGCACTTCAGCTAATTTCAATCAAACAACTTTTTGATAAGCTATTTACCCAACATTTACAAGTTTTAATGCTAAAACTTAAAATTCTGTTTCATTTCAGTGATGTAACTCTCTTCTTGTGTCATTAGTCGCCTCGAAGAGCCAAGTTTGATTATCTATCATCCTGTGAGAAACATTTTAAAAAAAACTGTTAACTAATAGAATGCGGATGATATTATTTCACACATTTTGTTAGTTGACCAATTTTCAAAAACTTAATTGGTAACCGGAATAATTACGGTCCAAAATAAGACATAGCAAAGAGAGAGGCAGCGTTGGTACATAGAGCTTTAGAATCTTGAAATTAGACTTGTCGATTAGTGACCACGGAGATACAGAAATATCTAGTGGTTGTATGTTGTTTAAAATTGAATGGCAGTTTGAATTTTTCTGTTACCTCTTCCAAATTTCGAGATATAAAGGATAGAAAAATCCTTTCATAGTCTCACAAACGCATTCCATTTTTATATGT</canonical>
            <polymorphic>TGCAGAAATTCGAAAATCAGGGATTTTTGATTAGAAATTCGAGACTTTAGAAACTCAAAAAAATTGCATTCTCTTTTCAAGAAACATGTATTCTGTCATGTAGAAACTCGGAAATTCAGAAAATCGGTTATTTTTTTTTTAACCGACAAGACTTAACAGAAATTATCAAAAAACTGAAAAAAAAGTACGTCTGTTTTATCAAAAGTGGTCTTCAAATAGATGTGGGGTTCTATTAGAGAAAATCCGGTACCCAAAAATTCTGACTTTAGGAAAATCAAAAGTTTCGGGCACTCGGGAAATTCTGAAATTAGAAAACAAAAACCAGGAGGTTGAGCCCCCGGCAGGGGGCTCAAACCGATTGGTGTGTTCTATCAGAAAAAGCACATTTGAAAACCCTAAAATAGTTTTTGTAGTCTAAAATTCGTCCATTCGCCCGTATTACCACACTTTCGAAATGTCCCGGAGCCAAAAAACTCATAGTGCGCTCCACCGCACTTCASCTAATTTCAATCAAACAACTTTTTGATAAGCTATTTACCCAACATTTACAAGTTTTAATGCTAAAACTTAAAATTCTGTTTCATTTCAGTGATGTAACTCTCTTCTTGTGTCATTAGTCGCCTCGAAGAGCCAAGTTTGATTATCTATCATCCTGTGAGAAACATTTTAAAAAAAACTGTTAACTAATAGAATGCGGATGATATTATTTCACACATTTTGTTAGTTGACCAATTTTCAAAAACTTAATTGGTAACCGGAATAATTACGGTCCAAAATAAGACATAGCAAAGAGAGAGGCAGCGTTGGTACATAGAGCTTTAGAATCTTGAAATTAGACTTGTCGATTAGTGACCACGGAGATACAGAAATATCTAGTGGTTGTATGTTGTTTAAAATTGAATGGCAGTTTGAATTTTTCTGTTACCTCTTCCAAATTTCGAGATATAAAGGATAGAAAAATCCTTTCATAGTCTCACAAACGCATTCCATTTTTATATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>500 286 184 30</canonical_bands>
                <polymorphic_bands>530 286 184</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>334 186 184 117 100 35 30 14</canonical_bands>
                <polymorphic_bands>334 186 184 117 100 65 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTGTTCTATCAGAAAAAGCACAT</pcr_primer_p1>
		<pcr_primer_p2>GACACAAGAAGAGAGTTACATCAC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTGTTCTATCAGAAAAAGCACATTTGAAAACCCTAAAATAGTTTTTGTAGTCTAAAATTCGTCCATTCGCCCGTATTACCACACTTTCGAAATGTCCCGGAGCCAAAAAACTCATAGTGCGCTCCACCGCACTTCAGCTAATTTCAATCAAACAACTTTTTGATAAGCTATTTACCCAACATTTACAAGTTTTAATGCTAAAACTTAAAATTCTGTTTCATTTCAGTGATGTAACTCTCTTCTTGTGTC</canonical_amplicon>
		<polymorphic_amplicon>GTGTTCTATCAGAAAAAGCACATTTGAAAACCCTAAAATAGTTTTTGTAGTCTAAAATTCGTCCATTCGCCCGTATTACCACACTTTCGAAATGTCCCGGAGCCAAAAAACTCATAGTGCGCTCCACCGCACTTCASCTAATTTCAATCAAACAACTTTTTGATAAGCTATTTACCCAACATTTACAAGTTTTAATGCTAAAACTTAAAATTCTGTTTCATTTCAGTGATGTAACTCTCTTCTTGTGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39574</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>91629</contig_pos>
        <strand></strand>
        <context>TTTCGATTTA[A/T]AATCCATAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GATTTTTGAGAATCGTTTCAATGCTATATCTCCGCCTCACTTTCGATTTA</left_flank>
        <right_flank>AATCCATAGAAGACGAGCATATCATTCAATTATGTTTGTAGTCAGTTTTT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTGAAGATGATAGTATTTTTAGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCACGGCCTACGGTGTTTCTCTTCCACAGCTCCGGTTTTTTCTGTATCAGAACATTACATTATACATGCAACGGTCCAGACCGGGTCGGCCTTCTTTTTCAGAATTTTTAAAGAAATGTTTCTGCCGGCTTGGGTGTCCAGAAAAACTTTTCTCCTGTCTTTTCAAAACATTTTCGGGGTAAACAGAAATAATCTACGATGTTTCTGTCAAGTAAAAACGTTCCAAGATGAGAGTGTTATTAAAGAAATTTTTTTATTAAAAAGTTAAAAAGGAATTCTGAAATTTCGAAACTTTTTTTCAAGTTTGGGAAACCCGAGCCCGCCAGGCCTTGATTTTTCAATTATACAGGAAATATGGAATTTTACAAGTTTAGGTCTCGGATCTGCCGTCGTGATGATTTTTGAGAATCGTTTCAATGCTATATCTCCGCCTCACTTTCGATTTAAAATCCATAGAAGACGAGCATATCATTCAATTATGTTTGTAGTCAGTTTTTGTCTACTAATATCCTCTTTTCTGAAACTTGAAGATCAGAAAACTGCAAAGCAATATTATTCCGAGGTTTATTCCCAAATCAAGATCATTAAAAAAACAATAAAAAAATATTTCAGTACTTCTGTGTCCGATTCCTCAATTCTTCACAACTGCATTCTCATTTAAACCAGTTTTAGTTCCACTTCTTATCTCAACTGTTCTTCTATTTTCTTTATTAATATTAATACAAGTTATCACATTTGCATTTCTCAGTTTTTATTTTCTCTTTTCTCTCGAGAAGAGCAAAATGTCCCAAGCTACTCGGAACTTACAAAAGAAATTCTTTCTCACTGCGTGGTTACAGGTGAAAAAGTTTTTTTAGAAAGCTAGGAAATGTGATAACTCGAAAATGTGAATTTCAGATTTTGACCCATCTTGCTGTTATCGTAATTCCCATGGGATATACATTTTT</canonical>
            <polymorphic>CTGAAGATGATAGTATTTTTAGGTTACGGTAGTTTTCGTTGTGGGACCTTCGGCCACGGCCTACGGTGTTTCTCTTCCACAGCTCCGGTTTTTTCTGTATCAGAACATTACATTATACATGCAACGGTCCAGACCGGGTCGGCCTTCTTTTTCAGAATTTTTAAAGAAATGTTTCTGCCGGCTTGGGTGTCCAGAAAAACTTTTCTCCTGTCTTTTCAAAACATTTTCGGGGTAAACAGAAATAATCTACGATGTTTCTGTCAAGTAAAAACGTTCCAAGATGAGAGTGTTATTAAAGAAATTTTTTTATTAAAAAGTTAAAAAGGAATTCTGAAATTTCGAAACTTTTTTTCAAGTTTGGGAAACCCGAGCCCGCCAGGCCTTGATTTTTCAATTATACAGGAAATATGGAATTTTACAAGTTTAGGTCTCGGATCTGCCGTCGTGATGATTTTTGAGAATCGTTTCAATGCTATATCTCCGCCTCACTTTCGATTTAWAATCCATAGAAGACGAGCATATCATTCAATTATGTTTGTAGTCAGTTTTTGTCTACTAATATCCTCTTTTCTGAAACTTGAAGATCAGAAAACTGCAAAGCAATATTATTCCGAGGTTTATTCCCAAATCAAGATCATTAAAAAAACAATAAAAAAATATTTCAGTACTTCTGTGTCCGATTCCTCAATTCTTCACAACTGCATTCTCATTTAAACCAGTTTTAGTTCCACTTCTTATCTCAACTGTTCTTCTATTTTCTTTATTAATATTAATACAAGTTATCACATTTGCATTTCTCAGTTTTTATTTTCTCTTTTCTCTCGAGAAGAGCAAAATGTCCCAAGCTACTCGGAACTTACAAAAGAAATTCTTTCTCACTGCGTGGTTACAGGTGAAAAAGTTTTTTTAGAAAGCTAGGAAATGTGATAACTCGAAAATGTGAATTTCAGATTTTGACCCATCTTGCTGTTATCGTAATTCCCATGGGATATACATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>336 288 214 162</canonical_bands>
                <polymorphic_bands>550 288 162</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>230 179 161 141 132 73 53 17 8 6</canonical_bands>
                <polymorphic_bands>320 230 161 132 73 53 17 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGGAAATATGGAATTTTACAAG</pcr_primer_p1>
		<pcr_primer_p2>TTAATGATCTTGATTTGGGAATA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CAGGAAATATGGAATTTTACAAGTTTAGGTCTCGGATCTGCCGTCGTGATGATTTTTGAGAATCGTTTCAATGCTATATCTCCGCCTCACTTTCGATTTAAAATCCATAGAAGACGAGCATATCATTCAATTATGTTTGTAGTCAGTTTTTGTCTACTAATATCCTCTTTTCTGAAACTTGAAGATCAGAAAACTGCAAAGCAATATTATTCCGAGGTTTATTCCCAAATCAAGATCATTAA</canonical_amplicon>
		<polymorphic_amplicon>CAGGAAATATGGAATTTTACAAGTTTAGGTCTCGGATCTGCCGTCGTGATGATTTTTGAGAATCGTTTCAATGCTATATCTCCGCCTCACTTTCGATTTAWAATCCATAGAAGACGAGCATATCATTCAATTATGTTTGTAGTCAGTTTTTGTCTACTAATATCCTCTTTTCTGAAACTTGAAGATCAGAAAACTGCAAAGCAATATTATTCCGAGGTTTATTCCCAAATCAAGATCATTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39575</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>94290</contig_pos>
        <strand>+</strand>
        <context>ATTCTTGACT[G/T]GTGATAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTTTGAGTGTGATGAGACCAAAAAGAAGAAGAAGAGAATGATTCTTGACT</left_flank>
        <right_flank>GTGATAAAATGAAAATGTTATTTGCATTGGTTTCTGATTTTTAAAAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGGTGACAAAGAAATGTACTAGGGATGTGACACAGCATATAGCTCTCTTGGATGGTGCAACTATCCTCGGCGAAGTAAATAAACGATTCTGTGGTATGATTAATGGAGAAAATTGGGATGTTTATCAATCGTTCTTGGATCTTTTTGAAAAAAGCGACACACAATGGGGAACTTGTGCTGGATCAAAAAGGCAAACCTATGGTAAAATTGAAGCGATGATAGAAGAAATCATTTGATTTTCAGACCATATTCGTGGGCACATGGAAAAGGTGGCTACTCGGTATGCAAAGTGTACGGTATATGTGAGGATCCGGAATTTGGTGGCTGCGGACTTTTCGACAACTTTTCTGGTGAGCAGAGCAACGGAAGTTCAGGAGCAAGAGGAATTGGATGTGGGATTTGCTGGATTCAAAGACAAAAAAGGACTGTGGCAAATGAATCGGATGTACTTTGAGTGTGATGAGACCAAAAAGAAGAAGAAGAGAATGATTCTTGACTTGTGATAAAATGAAAATGTTATTTGCATTGGTTTCTGATTTTTAAAAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGTAATTAAATGGCTCCCGAACTGTCAACTTCTCGTGTGCTGTAAATCAGGTGTAAAAGTGATTAAGTGGAAAAGTTAATAAAAATATTTTCAAAATTTAAAATTTTTTTCAAAAATCCTCCTACAGTAACCGAGGCGAAGGAGGTCCTCCGACTGCTAACCAAAATATTATATTACGGTCCAGTCTTGTTTCCTTTCTTGGTTTATCGCATCTACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCA</canonical>
            <polymorphic>TGGGTGACAAAGAAATGTACTAGGGATGTGACACAGCATATAGCTCTCTTGGATGGTGCAACTATCCTCGGCGAAGTAAATAAACGATTCTGTGGTATGATTAATGGAGAAAATTGGGATGTTTATCAATCGTTCTTGGATCTTTTTGAAAAAAGCGACACACAATGGGGAACTTGTGCTGGATCAAAAAGGCAAACCTATGGTAAAATTGAAGCGATGATAGAAGAAATCATTTGATTTTCAGACCATATTCGTGGGCACATGGAAAAGGTGGCTACTCGGTATGCAAAGTGTACGGTATATGTGAGGATCCGGAATTTGGTGGCTGCGGACTTTTCGACAACTTTTCTGGTGAGCAGAGCAACGGAAGTTCAGGAGCAAGAGGAATTGGATGTGGGATTTGCTGGATTCAAAGACAAAAAAGGACTGTGGCAAATGAATCGGATGTACTTTGAGTGTGATGAGACCAAAAAGAAGAAGAAGAGAATGATTCTTGACTKGTGATAAAATGAAAATGTTATTTGCATTGGTTTCTGATTTTTAAAAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGTAATTAAATGGCTCCCGAACTGTCAACTTCTCGTGTGCTGTAAATCAGGTGTAAAAGTGATTAAGTGGAAAAGTTAATAAAAATATTTTCAAAATTTAAAATTTTTTTCAAAAATCCTCCTACAGTAACCGAGGCGAAGGAGGTCCTCCGACTGCTAACCAAAATATTATATTACGGTCCAGTCTTGTTTCCTTTCTTGGTTTATCGCATCTACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCTGGATTCAAAGACAAAAA</pcr_primer_p1>
		<pcr_primer_p2>ACAGGTACATGGTACATTTATGG</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GCTGGATTCAAAGACAAAAAAGGACTGTGGCAAATGAATCGGATGTACTTTGAGTGTGATGAGACCAAAAAGAAGAAGAAGAGAATGATTCTTGACTTGTGATAAAATGAAAATGTTATTTGCATTGGTTTCTGATTTTTAAAAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGT</canonical_amplicon>
		<polymorphic_amplicon>GCTGGATTCAAAGACAAAAAAGGACTGTGGCAAATGAATCGGATGTACTTTGAGTGTGATGAGACCAAAAAGAAGAAGAAGAGAATGATTCTTGACTKGTGATAAAATGAAAATGTTATTTGCATTGGTTTCTGATTTTTAAAAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39576</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>94324</contig_pos>
        <strand>+</strand>
        <context>GCATTGGTTT[C/T]TGatttttww</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGAATGATTCTTGACTTGTGATAAAATGAAAATGTTATTTGCATTGGTTT</left_flank>
        <right_flank>TGATTTTTAAAAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGCATATAGCTCTCTTGGATGGTGCAACTATCCTCGGCGAAGTAAATAAACGATTCTGTGGTATGATTAATGGAGAAAATTGGGATGTTTATCAATCGTTCTTGGATCTTTTTGAAAAAAGCGACACACAATGGGGAACTTGTGCTGGATCAAAAAGGCAAACCTATGGTAAAATTGAAGCGATGATAGAAGAAATCATTTGATTTTCAGACCATATTCGTGGGCACATGGAAAAGGTGGCTACTCGGTATGCAAAGTGTACGGTATATGTGAGGATCCGGAATTTGGTGGCTGCGGACTTTTCGACAACTTTTCTGGTGAGCAGAGCAACGGAAGTTCAGGAGCAAGAGGAATTGGATGTGGGATTTGCTGGATTCAAAGACAAAAAAGGACTGTGGCAAATGAATCGGATGTACTTTGAGTGTGATGAGACCAAAAAGAAGAAGAAGAGAATGATTCTTGACTTGTGATAAAATGAAAATGTTATTTGCATTGGTTTCTGATTTTTAAAAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGTAATTAAATGGCTCCCGAACTGTCAACTTCTCGTGTGCTGTAAATCAGGTGTAAAAGTGATTAAGTGGAAAAGTTAATAAAAATATTTTCAAAATTTAAAATTTTTTTCAAAAATCCTCCTACAGTAACCGAGGCGAAGGAGGTCCTCCGACTGCTAACCAAAATATTATATTACGGTCCAGTCTTGTTTCCTTTCTTGGTTTATCGCATCTACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGT</canonical>
            <polymorphic>AGCATATAGCTCTCTTGGATGGTGCAACTATCCTCGGCGAAGTAAATAAACGATTCTGTGGTATGATTAATGGAGAAAATTGGGATGTTTATCAATCGTTCTTGGATCTTTTTGAAAAAAGCGACACACAATGGGGAACTTGTGCTGGATCAAAAAGGCAAACCTATGGTAAAATTGAAGCGATGATAGAAGAAATCATTTGATTTTCAGACCATATTCGTGGGCACATGGAAAAGGTGGCTACTCGGTATGCAAAGTGTACGGTATATGTGAGGATCCGGAATTTGGTGGCTGCGGACTTTTCGACAACTTTTCTGGTGAGCAGAGCAACGGAAGTTCAGGAGCAAGAGGAATTGGATGTGGGATTTGCTGGATTCAAAGACAAAAAAGGACTGTGGCAAATGAATCGGATGTACTTTGAGTGTGATGAGACCAAAAAGAAGAAGAAGAGAATGATTCTTGACTTGTGATAAAATGAAAATGTTATTTGCATTGGTTTYTGATTTTTAAAAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGTAATTAAATGGCTCCCGAACTGTCAACTTCTCGTGTGCTGTAAATCAGGTGTAAAAGTGATTAAGTGGAAAAGTTAATAAAAATATTTTCAAAATTTAAAATTTTTTTCAAAAATCCTCCTACAGTAACCGAGGCGAAGGAGGTCCTCCGACTGCTAACCAAAATATTATATTACGGTCCAGTCTTGTTTCCTTTCTTGGTTTATCGCATCTACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>209 200 200 140 96 92 63</canonical_bands>
                <polymorphic_bands>209 200 200 155 140 96</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAAGAAGAAGAAGAGAATGA</pcr_primer_p1>
		<pcr_primer_p2>CCACTTAATCACTTTTACACCTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAAAAAGAAGAAGAAGAGAATGATTCTTGACTTGTGATAAAATGAAAATGTTATTTGCATTGGTTTCTGATTTTTAAAAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGTAATTAAATGGCTCCCGAACTGTCAACTTCTCGTGTGCTGTAAATCAGGTGTAAAAGTGATTAAGTGG</canonical_amplicon>
		<polymorphic_amplicon>CAAAAAGAAGAAGAAGAGAATGATTCTTGACTTGTGATAAAATGAAAATGTTATTTGCATTGGTTTYTGATTTTTAAAAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGTAATTAAATGGCTCCCGAACTGTCAACTTCTCGTGTGCTGTAAATCAGGTGTAAAAGTGATTAAGTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39577</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>94820</contig_pos>
        <strand>+</strand>
        <context>ATAAACGATG[C/T]GCGTTCTCCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAATCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATG</left_flank>
        <right_flank>GCGTTCTCCTTCTTCCTTCTCACTCTTCTATTTCCCTCCGATGCGTCTGC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTGATTTTTAAAAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGTAATTAAATGGCTCCCGAACTGTCAACTTCTCGTGTGCTGTAAATCAGGTGTAAAAGTGATTAAGTGGAAAAGTTAATAAAAATATTTTCAAAATTTAAAATTTTTTTCAAAAATCCTCCTACAGTAACCGAGGCGAAGGAGGTCCTCCGACTGCTAACCAAAATATTATATTACGGTCCAGTCTTGTTTCCTTTCTTGGTTTATCGCATCTACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCTTCCTTCTCACTCTTCTATTTCCCTCCGATGCGTCTGCTTGTATTCTCCCTTTTTCTATTGCTACCTGAATTGGCTCGGGGATTCGAGTCTTTGGACCTTTCCGAGTACAATCATCTTTCCTCGAATACCATCATTGACTTCTATGACAATGAAATCCCGGACATTGATTTTGAATCGGAACTTCGTCGTTTCCAAGAACCAATACCAAAAACTGGAGCTGAAATGATGGCCAGATTCAACAGGAATTTTTTGAATTTCCTATCGAAAGGCGAAAGAAAGGATTGGAATAATTTGATGCAAATCATGTCGCCGGATGCGTATATTGAGACTTGTATGGCATCGGCTTATGGATTGAGTCTGGATCAGTTTTATAAATGGATGACCTACTTGAGCAAGTTCTATTTGGAAGTTGGGGTAAACATCCTAATCATCTATAATATAAAAAAATGAGAAGATACATTTCAGTTGACTAGCACGGTCATAACAG</canonical>
            <polymorphic>TTTCTGATTTTTAAAAAAAAATATAATCTAATTTTGTGGATTCCATGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGTAATTAAATGGCTCCCGAACTGTCAACTTCTCGTGTGCTGTAAATCAGGTGTAAAAGTGATTAAGTGGAAAAGTTAATAAAAATATTTTCAAAATTTAAAATTTTTTTCAAAAATCCTCCTACAGTAACCGAGGCGAAGGAGGTCCTCCGACTGCTAACCAAAATATTATATTACGGTCCAGTCTTGTTTCCTTTCTTGGTTTATCGCATCTACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGYGCGTTCTCCTTCTTCCTTCTCACTCTTCTATTTCCCTCCGATGCGTCTGCTTGTATTCTCCCTTTTTCTATTGCTACCTGAATTGGCTCGGGGATTCGAGTCTTTGGACCTTTCCGAGTACAATCATCTTTCCTCGAATACCATCATTGACTTCTATGACAATGAAATCCCGGACATTGATTTTGAATCGGAACTTCGTCGTTTCCAAGAACCAATACCAAAAACTGGAGCTGAAATGATGGCCAGATTCAACAGGAATTTTTTGAATTTCCTATCGAAAGGCGAAAGAAAGGATTGGAATAATTTGATGCAAATCATGTCGCCGGATGCGTATATTGAGACTTGTATGGCATCGGCTTATGGATTGAGTCTGGATCAGTTTTATAAATGGATGACCTACTTGAGCAAGTTCTATTTGGAAGTTGGGGTAAACATCCTAATCATCTATAATATAAAAAAATGAGAAGATACATTTCAGTTGACTAGCACGGTCATAACAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGCG</site>
                <isoschizomers>
                    <enzyme>AccII</enzyme>
                    <enzyme>Bsh1236I</enzyme>
                    <enzyme>BstFNI</enzyme>
                    <enzyme>BstUI</enzyme>
                    <enzyme>FnuDII</enzyme>
                    <enzyme>MvnI</enzyme>
                    <enzyme>SelI</enzyme>
                    <enzyme>ThaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACCGTATCTAGAAACTTTTCTTTT</pcr_primer_p1>
		<pcr_primer_p2>GTAGCAATAGAAAAAGGGAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCTTCCTTCTCACTCTTCTATTTCCCTCCGATGCGTCTGCTTGTATTCTCCCTTTTTCTATTGCTAC</canonical_amplicon>
		<polymorphic_amplicon>TACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGYGCGTTCTCCTTCTTCCTTCTCACTCTTCTATTTCCCTCCGATGCGTCTGCTTGTATTCTCCCTTTTTCTATTGCTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39578</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>94865</contig_pos>
        <strand>+</strand>
        <context>CCTCCGATGC[A/G]TCTGCTTGTA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGATGCGCGTTCTCCTTCTTCCTTCTCACTCTTCTATTTCCCTCCGATGC</left_flank>
        <right_flank>TCTGCTTGTATTCTCCCTTTTTCTATTGCTACCTGAATTGGCTCGGGGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGTAATTAAATGGCTCCCGAACTGTCAACTTCTCGTGTGCTGTAAATCAGGTGTAAAAGTGATTAAGTGGAAAAGTTAATAAAAATATTTTCAAAATTTAAAATTTTTTTCAAAAATCCTCCTACAGTAACCGAGGCGAAGGAGGTCCTCCGACTGCTAACCAAAATATTATATTACGGTCCAGTCTTGTTTCCTTTCTTGGTTTATCGCATCTACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCTTCCTTCTCACTCTTCTATTTCCCTCCGATGCGTCTGCTTGTATTCTCCCTTTTTCTATTGCTACCTGAATTGGCTCGGGGATTCGAGTCTTTGGACCTTTCCGAGTACAATCATCTTTCCTCGAATACCATCATTGACTTCTATGACAATGAAATCCCGGACATTGATTTTGAATCGGAACTTCGTCGTTTCCAAGAACCAATACCAAAAACTGGAGCTGAAATGATGGCCAGATTCAACAGGAATTTTTTGAATTTCCTATCGAAAGGCGAAAGAAAGGATTGGAATAATTTGATGCAAATCATGTCGCCGGATGCGTATATTGAGACTTGTATGGCATCGGCTTATGGATTGAGTCTGGATCAGTTTTATAAATGGATGACCTACTTGAGCAAGTTCTATTTGGAAGTTGGGGTAAACATCCTAATCATCTATAATATAAAAAAATGAGAAGATACATTTCAGTTGACTAGCACGGTCATAACAGACAGCTCCGATGATATCACCACTGAACTGGATTATAGGTCAGACG</canonical>
            <polymorphic>TGTTTGTTTCATGAATGATTTCGGATAAAGATTTAAAAATCCGTTAAATGTACCATAAATGTACCATGTACCTGTAATTAAATGGCTCCCGAACTGTCAACTTCTCGTGTGCTGTAAATCAGGTGTAAAAGTGATTAAGTGGAAAAGTTAATAAAAATATTTTCAAAATTTAAAATTTTTTTCAAAAATCCTCCTACAGTAACCGAGGCGAAGGAGGTCCTCCGACTGCTAACCAAAATATTATATTACGGTCCAGTCTTGTTTCCTTTCTTGGTTTATCGCATCTACCGTATCTAGAAACTTTTCTTTTTGCTAGAGTACCCAATCAATAAGAAACTTCGGTCTAGGCCACGTGTTCCTTCCGAACTGCAAGGAATACTGTAATTTTTCTCCAACTCGGCTGGGAAATCGTCTTAAACGAATCAGGAGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCTTCCTTCTCACTCTTCTATTTCCCTCCGATGCRTCTGCTTGTATTCTCCCTTTTTCTATTGCTACCTGAATTGGCTCGGGGATTCGAGTCTTTGGACCTTTCCGAGTACAATCATCTTTCCTCGAATACCATCATTGACTTCTATGACAATGAAATCCCGGACATTGATTTTGAATCGGAACTTCGTCGTTTCCAAGAACCAATACCAAAAACTGGAGCTGAAATGATGGCCAGATTCAACAGGAATTTTTTGAATTTCCTATCGAAAGGCGAAAGAAAGGATTGGAATAATTTGATGCAAATCATGTCGCCGGATGCGTATATTGAGACTTGTATGGCATCGGCTTATGGATTGAGTCTGGATCAGTTTTATAAATGGATGACCTACTTGAGCAAGTTCTATTTGGAAGTTGGGGTAAACATCCTAATCATCTATAATATAAAAAAATGAGAAGATACATTTCAGTTGACTAGCACGGTCATAACAGACAGCTCCGATGATATCACCACTGAACTGGATTATAGGTCAGACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGGCCTATGGAACGACTATAA</pcr_primer_p1>
		<pcr_primer_p2>GTATTGGTTCTTGGAAACGAC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCTTCCTTCTCACTCTTCTATTTCCCTCCGATGCGTCTGCTTGTATTCTCCCTTTTTCTATTGCTACCTGAATTGGCTCGGGGATTCGAGTCTTTGGACCTTTCCGAGTACAATCATCTTTCCTCGAATACCATCATTGACTTCTATGACAATGAAATCCCGGACATTGATTTTGAATCGGAACTTCGTCGTTTCCAAGAACCAATAC</canonical_amplicon>
		<polymorphic_amplicon>AGGCCTATGGAACGACTATAAACGATGCGCGTTCTCCTTCTTCCTTCTCACTCTTCTATTTCCCTCCGATGCRTCTGCTTGTATTCTCCCTTTTTCTATTGCTACCTGAATTGGCTCGGGGATTCGAGTCTTTGGACCTTTCCGAGTACAATCATCTTTCCTCGAATACCATCATTGACTTCTATGACAATGAAATCCCGGACATTGATTTTGAATCGGAACTTCGTCGTTTCCAAGAACCAATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39579</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>113186</contig_pos>
        <strand></strand>
        <context>acacaatctt[G/A]atgttttgaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAAATTGTTTATCATAATATCAGACGTGTTTCGTCAGTTGACACAATCTT</left_flank>
        <right_flank>ATGTTTTGAATAGTAATTGAGAGAATTTAGTCCAAACTTGACAGTATTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCACGTGGTGTGGACCATGTAAGGCGATCGCTCCATTGTACAGGGAACTGGCCATCGAGTACAAGGGAGTCATCTTTTGCAAAGTCGATGTTGATGAAGCCGTTAGTAAATCTAGATAATTGCAGTTTGAAATTCTGTGTTTCAGGAAGACCTCTGCGCCAAGTACGACGTCAAGATGATGCCCACGTTCGTCTTCACCAAAAACGGAGAGACACTGGTAAGCGAGACGTTTATTGGGCTATGAATGGGAAGTTTGTCACTTGTGGAATTATGAGTCCTGTAAACGATTGTCAGTATTGATAATTCAATTAGAATCAGAAGTTCCATAAGATTTTAGATTTTTTTTTCTTATTGATACTGTAAAACCTGTAATAGCAAGGCCTCCTAACTTTTACTTTGAGGCGACTTTTCTCGGTTCCTGTCAAAGGTATGAAAAAGTTGTCAATTGATAAATTGTTTATCATAATATCAGACGTGTTTCGTCAGTTGACACAATCTTGATGTTTTGAATAGTAATTGAGAGAATTTAGTCCAAACTTGACAGTATTTGGGCCCTTCTAATACAGGTTTCACGTTAATGTGAATTCGATGATATCGCGTTCCGCTTCACACCGTAACCACCCATCCCCCTATACGTCCATCAATTAAAAAATACTTACGACCAATACAAAAATCTTCTAATTGAATTTTCGAGCAGGTGGATCAATCGTGAGGTGTTACCATAAAACCTGTAAAGGGGCTCCACACTTTCCAGTTTGAGCTCAATTATCCTATACAAGATATCAAAAAAAGGTTAAGTGACAGAAAATGTCTGATATAATGATTAAAAGTTTATCAGTTGACAGCTATTTTATATCTTCGACGAGACCTGAGAAAAATCGTCTCAAAATTAGAAAGAACTTCAATTACAGGTTTTACGGTAATAGTGAAATTCGGATCTCATTCTCTCGGATTTCTAGAAAACTATTCCCTCCAATCATATTATTTTGACCTTTACAGG</canonical>
            <polymorphic>CCACGTGGTGTGGACCATGTAAGGCGATCGCTCCATTGTACAGGGAACTGGCCATCGAGTACAAGGGAGTCATCTTTTGCAAAGTCGATGTTGATGAAGCCGTTAGTAAATCTAGATAATTGCAGTTTGAAATTCTGTGTTTCAGGAAGACCTCTGCGCCAAGTACGACGTCAAGATGATGCCCACGTTCGTCTTCACCAAAAACGGAGAGACACTGGTAAGCGAGACGTTTATTGGGCTATGAATGGGAAGTTTGTCACTTGTGGAATTATGAGTCCTGTAAACGATTGTCAGTATTGATAATTCAATTAGAATCAGAAGTTCCATAAGATTTTAGATTTTTTTTTCTTATTGATACTGTAAAACCTGTAATAGCAAGGCCTCCTAACTTTTACTTTGAGGCGACTTTTCTCGGTTCCTGTCAAAGGTATGAAAAAGTTGTCAATTGATAAATTGTTTATCATAATATCAGACGTGTTTCGTCAGTTGACACAATCTTRATGTTTTGAATAGTAATTGAGAGAATTTAGTCCAAACTTGACAGTATTTGGGCCCTTCTAATACAGGTTTCACGTTAATGTGAATTCGATGATATCGCGTTCCGCTTCACACCGTAACCACCCATCCCCCTATACGTCCATCAATTAAAAAATACTTACGACCAATACAAAAATCTTCTAATTGAATTTTCGAGCAGGTGGATCAATCGTGAGGTGTTACCATAAAACCTGTAAAGGGGCTCCACACTTTCCAGTTTGAGCTCAATTATCCTATACAAGATATCAAAAAAAGGTTAAGTGACAGAAAATGTCTGATATAATGATTAAAAGTTTATCAGTTGACAGCTATTTTATATCTTCGACGAGACCTGAGAAAAATCGTCTCAAAATTAGAAAGAACTTCAATTACAGGTTTTACGGTAATAGTGAAATTCGGATCTCATTCTCTCGGATTTCTAGAAAACTATTCCCTCCAATCATATTATTTTGACCTTTACAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>325 248 211 112 44 31 29</canonical_bands>
                <polymorphic_bands>536 248 112 44 31 29</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGAAGTTCCATAAGATTTTAGATT</pcr_primer_p1>
		<pcr_primer_p2>GAAGATTTTTGTATTGGTCGTAA</pcr_primer_p2>
		<pcr_amplicon_size>363</pcr_amplicon_size>
		<canonical_amplicon>CAGAAGTTCCATAAGATTTTAGATTTTTTTTTCTTATTGATACTGTAAAACCTGTAATAGCAAGGCCTCCTAACTTTTACTTTGAGGCGACTTTTCTCGGTTCCTGTCAAAGGTATGAAAAAGTTGTCAATTGATAAATTGTTTATCATAATATCAGACGTGTTTCGTCAGTTGACACAATCTTGATGTTTTGAATAGTAATTGAGAGAATTTAGTCCAAACTTGACAGTATTTGGGCCCTTCTAATACAGGTTTCACGTTAATGTGAATTCGATGATATCGCGTTCCGCTTCACACCGTAACCACCCATCCCCCTATACGTCCATCAATTAAAAAATACTTACGACCAATACAAAAATCTTC</canonical_amplicon>
		<polymorphic_amplicon>CAGAAGTTCCATAAGATTTTAGATTTTTTTTTCTTATTGATACTGTAAAACCTGTAATAGCAAGGCCTCCTAACTTTTACTTTGAGGCGACTTTTCTCGGTTCCTGTCAAAGGTATGAAAAAGTTGTCAATTGATAAATTGTTTATCATAATATCAGACGTGTTTCGTCAGTTGACACAATCTTRATGTTTTGAATAGTAATTGAGAGAATTTAGTCCAAACTTGACAGTATTTGGGCCCTTCTAATACAGGTTTCACGTTAATGTGAATTCGATGATATCGCGTTCCGCTTCACACCGTAACCACCCATCCCCCTATACGTCCATCAATTAAAAAATACTTACGACCAATACAAAAATCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39580</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>113225</contig_pos>
        <strand></strand>
        <context>agtccaaact[T/G]gacagtattt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GACACAATCTTGATGTTTTGAATAGTAATTGAGAGAATTTAGTCCAAACT</left_flank>
        <right_flank>GACAGTATTTGGGCCCTTCTAATACAGGTTTCACGTTAATGTGAATTCGA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACAGGGAACTGGCCATCGAGTACAAGGGAGTCATCTTTTGCAAAGTCGATGTTGATGAAGCCGTTAGTAAATCTAGATAATTGCAGTTTGAAATTCTGTGTTTCAGGAAGACCTCTGCGCCAAGTACGACGTCAAGATGATGCCCACGTTCGTCTTCACCAAAAACGGAGAGACACTGGTAAGCGAGACGTTTATTGGGCTATGAATGGGAAGTTTGTCACTTGTGGAATTATGAGTCCTGTAAACGATTGTCAGTATTGATAATTCAATTAGAATCAGAAGTTCCATAAGATTTTAGATTTTTTTTTCTTATTGATACTGTAAAACCTGTAATAGCAAGGCCTCCTAACTTTTACTTTGAGGCGACTTTTCTCGGTTCCTGTCAAAGGTATGAAAAAGTTGTCAATTGATAAATTGTTTATCATAATATCAGACGTGTTTCGTCAGTTGACACAATCTTGATGTTTTGAATAGTAATTGAGAGAATTTAGTCCAAACTTGACAGTATTTGGGCCCTTCTAATACAGGTTTCACGTTAATGTGAATTCGATGATATCGCGTTCCGCTTCACACCGTAACCACCCATCCCCCTATACGTCCATCAATTAAAAAATACTTACGACCAATACAAAAATCTTCTAATTGAATTTTCGAGCAGGTGGATCAATCGTGAGGTGTTACCATAAAACCTGTAAAGGGGCTCCACACTTTCCAGTTTGAGCTCAATTATCCTATACAAGATATCAAAAAAAGGTTAAGTGACAGAAAATGTCTGATATAATGATTAAAAGTTTATCAGTTGACAGCTATTTTATATCTTCGACGAGACCTGAGAAAAATCGTCTCAAAATTAGAAAGAACTTCAATTACAGGTTTTACGGTAATAGTGAAATTCGGATCTCATTCTCTCGGATTTCTAGAAAACTATTCCCTCCAATCATATTATTTTGACCTTTACAGGAGACTCTGGAAGGTGGTGTCGAGGAGGAACTTCGCCGAA</canonical>
            <polymorphic>ACAGGGAACTGGCCATCGAGTACAAGGGAGTCATCTTTTGCAAAGTCGATGTTGATGAAGCCGTTAGTAAATCTAGATAATTGCAGTTTGAAATTCTGTGTTTCAGGAAGACCTCTGCGCCAAGTACGACGTCAAGATGATGCCCACGTTCGTCTTCACCAAAAACGGAGAGACACTGGTAAGCGAGACGTTTATTGGGCTATGAATGGGAAGTTTGTCACTTGTGGAATTATGAGTCCTGTAAACGATTGTCAGTATTGATAATTCAATTAGAATCAGAAGTTCCATAAGATTTTAGATTTTTTTTTCTTATTGATACTGTAAAACCTGTAATAGCAAGGCCTCCTAACTTTTACTTTGAGGCGACTTTTCTCGGTTCCTGTCAAAGGTATGAAAAAGTTGTCAATTGATAAATTGTTTATCATAATATCAGACGTGTTTCGTCAGTTGACACAATCTTGATGTTTTGAATAGTAATTGAGAGAATTTAGTCCAAACTKGACAGTATTTGGGCCCTTCTAATACAGGTTTCACGTTAATGTGAATTCGATGATATCGCGTTCCGCTTCACACCGTAACCACCCATCCCCCTATACGTCCATCAATTAAAAAATACTTACGACCAATACAAAAATCTTCTAATTGAATTTTCGAGCAGGTGGATCAATCGTGAGGTGTTACCATAAAACCTGTAAAGGGGCTCCACACTTTCCAGTTTGAGCTCAATTATCCTATACAAGATATCAAAAAAAGGTTAAGTGACAGAAAATGTCTGATATAATGATTAAAAGTTTATCAGTTGACAGCTATTTTATATCTTCGACGAGACCTGAGAAAAATCGTCTCAAAATTAGAAAGAACTTCAATTACAGGTTTTACGGTAATAGTGAAATTCGGATCTCATTCTCTCGGATTTCTAGAAAACTATTCCCTCCAATCATATTATTTTGACCTTTACAGGAGACTCTGGAAGGTGGTGTCGAGGAGGAACTTCGCCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGAAGTTCCATAAGATTTTAGATT</pcr_primer_p1>
		<pcr_primer_p2>GAAGATTTTTGTATTGGTCGTAA</pcr_primer_p2>
		<pcr_amplicon_size>363</pcr_amplicon_size>
		<canonical_amplicon>CAGAAGTTCCATAAGATTTTAGATTTTTTTTTCTTATTGATACTGTAAAACCTGTAATAGCAAGGCCTCCTAACTTTTACTTTGAGGCGACTTTTCTCGGTTCCTGTCAAAGGTATGAAAAAGTTGTCAATTGATAAATTGTTTATCATAATATCAGACGTGTTTCGTCAGTTGACACAATCTTGATGTTTTGAATAGTAATTGAGAGAATTTAGTCCAAACTTGACAGTATTTGGGCCCTTCTAATACAGGTTTCACGTTAATGTGAATTCGATGATATCGCGTTCCGCTTCACACCGTAACCACCCATCCCCCTATACGTCCATCAATTAAAAAATACTTACGACCAATACAAAAATCTTC</canonical_amplicon>
		<polymorphic_amplicon>CAGAAGTTCCATAAGATTTTAGATTTTTTTTTCTTATTGATACTGTAAAACCTGTAATAGCAAGGCCTCCTAACTTTTACTTTGAGGCGACTTTTCTCGGTTCCTGTCAAAGGTATGAAAAAGTTGTCAATTGATAAATTGTTTATCATAATATCAGACGTGTTTCGTCAGTTGACACAATCTTGATGTTTTGAATAGTAATTGAGAGAATTTAGTCCAAACTKGACAGTATTTGGGCCCTTCTAATACAGGTTTCACGTTAATGTGAATTCGATGATATCGCGTTCCGCTTCACACCGTAACCACCCATCCCCCTATACGTCCATCAATTAAAAAATACTTACGACCAATACAAAAATCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39581</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>142707</contig_pos>
        <strand>+</strand>
        <context>TTGTTCGATG[C/T]TTTTTTTCTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTACGATAGTCAACTTCTACTAAGTTACTCATCAGATCTATTGTTCGATG</left_flank>
        <right_flank>TTTTTTTCTAACAAATCTAGATCTCAACAGTTGTTCTGGTAGCAATAGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CACCACTCAAGTGGTTTTCTGTTTCTGAGTGTGATAAACTTTTTAATCGGGAAGAGTCTTCTGATTCAGATGTTACTTCATCTGAAGTTTCATCAATTAACTTTTCCAAACCAGAATAGTTAGATTGCTTCTGGTATGACGTTATTTGAGATCCGGGGAAGTCGCTAACTTTTTGGAATTCGTTCATTTCGGATTCGAATAAGACGAAGCAAGTGTACACGGGGTTGAGTGATTGAACTTTTTTCTTTTCGATTACAACTACCAGTACATTCGTTTTGCCACCATCTTTACAAAGGACTAATGAAAATAGTGTGTTGATTAGAGAGACGGAAGAGGAAATTGAGAGCAAATAATTAACGAGTGTTTGTGATTAGCGATCAACATAAGGACCGAAGCGTGGAGGGAGTACTAACCGACCACATAGGTAGGTCAAAACTGTTTCTTGTGATCTACGATAGTCAACTTCTACTAAGTTACTCATCAGATCTATTGTTCGATGTTTTTTTTCTAACAAATCTAGATCTCAACAGTTGTTCTGGTAGCAATAGACAATACCGTAAAACCTGTATTAGAAGGGTACCTCTAATAGAAGGGCCCTCCGGAGGTACCTTGGAACAATACAAGTGCCCGCCCATCTAATATAGGTTTTACGGTATTTAAAGTTTCATGTACTCGCTACTACCGTAGGAAAACCAGGAAATGTTTCTGAATCTTCTACTTATACTGGTTTTTATCTTCTAAAAGCTCTTCACCAGATATCTTTAACCTTTCATTCTCATGCTCTATGTTTTGCTCATTCATGTCACTTGCTCTTTTTTCTTCTTCCTGCTGATATGTTTGATCTAGTTTTCTCTGCCAGTTTTTCTTTACCCAACCAAGTGGCTTGTTATCCCGTTAGAACCAAAATGCTCTTTTCTCCACATCGTTTGCACCATCCGTTTATATTGTTGACCTCGGGAAAAATCTGTCGCAACGACTATCACTTTTTGTGGAACTTATG</canonical>
            <polymorphic>CACCACTCAAGTGGTTTTCTGTTTCTGAGTGTGATAAACTTTTTAATCGGGAAGAGTCTTCTGATTCAGATGTTACTTCATCTGAAGTTTCATCAATTAACTTTTCCAAACCAGAATAGTTAGATTGCTTCTGGTATGACGTTATTTGAGATCCGGGGAAGTCGCTAACTTTTTGGAATTCGTTCATTTCGGATTCGAATAAGACGAAGCAAGTGTACACGGGGTTGAGTGATTGAACTTTTTTCTTTTCGATTACAACTACCAGTACATTCGTTTTGCCACCATCTTTACAAAGGACTAATGAAAATAGTGTGTTGATTAGAGAGACGGAAGAGGAAATTGAGAGCAAATAATTAACGAGTGTTTGTGATTAGCGATCAACATAAGGACCGAAGCGTGGAGGGAGTACTAACCGACCACATAGGTAGGTCAAAACTGTTTCTTGTGATCTACGATAGTCAACTTCTACTAAGTTACTCATCAGATCTATTGTTCGATGYTTTTTTTCTAACAAATCTAGATCTCAACAGTTGTTCTGGTAGCAATAGACAATACCGTAAAACCTGTATTAGAAGGGTACCTCTAATAGAAGGGCCCTCCGGAGGTACCTTGGAACAATACAAGTGCCCGCCCATCTAATATAGGTTTTACGGTATTTAAAGTTTCATGTACTCGCTACTACCGTAGGAAAACCAGGAAATGTTTCTGAATCTTCTACTTATACTGGTTTTTATCTTCTAAAAGCTCTTCACCAGATATCTTTAACCTTTCATTCTCATGCTCTATGTTTTGCTCATTCATGTCACTTGCTCTTTTTTCTTCTTCCTGCTGATATGTTTGATCTAGTTTTCTCTGCCAGTTTTTCTTTACCCAACCAAGTGGCTTGTTATCCCGTTAGAACCAAAATGCTCTTTTCTCCACATCGTTTGCACCATCCGTTTATATTGTTGACCTCGGGAAAAATCTGTCGCAACGACTATCACTTTTTGTGGAACTTATG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGATTAGAGAGACGGAAGAG</pcr_primer_p1>
		<pcr_primer_p2>TTACGGTATTGTCTATTGCTACC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTTGATTAGAGAGACGGAAGAGGAAATTGAGAGCAAATAATTAACGAGTGTTTGTGATTAGCGATCAACATAAGGACCGAAGCGTGGAGGGAGTACTAACCGACCACATAGGTAGGTCAAAACTGTTTCTTGTGATCTACGATAGTCAACTTCTACTAAGTTACTCATCAGATCTATTGTTCGATGTTTTTTTTCTAACAAATCTAGATCTCAACAGTTGTTCTGGTAGCAATAGACAATACCGTAA</canonical_amplicon>
		<polymorphic_amplicon>GTTGATTAGAGAGACGGAAGAGGAAATTGAGAGCAAATAATTAACGAGTGTTTGTGATTAGCGATCAACATAAGGACCGAAGCGTGGAGGGAGTACTAACCGACCACATAGGTAGGTCAAAACTGTTTCTTGTGATCTACGATAGTCAACTTCTACTAAGTTACTCATCAGATCTATTGTTCGATGYTTTTTTTCTAACAAATCTAGATCTCAACAGTTGTTCTGGTAGCAATAGACAATACCGTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39582</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>142834</contig_pos>
        <strand></strand>
        <context>aatacaagtg[C/G]cygcccatct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GTACCTCTAATAGAAGGGCCCTCCGGAGGTACCTTGGAACAATACAAGTG</left_flank>
        <right_flank>CCGCCCATCTAATATAGGTTTTACGGTATTTAAAGTTTCATGTACTCGCT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTCTGGTATGACGTTATTTGAGATCCGGGGAAGTCGCTAACTTTTTGGAATTCGTTCATTTCGGATTCGAATAAGACGAAGCAAGTGTACACGGGGTTGAGTGATTGAACTTTTTTCTTTTCGATTACAACTACCAGTACATTCGTTTTGCCACCATCTTTACAAAGGACTAATGAAAATAGTGTGTTGATTAGAGAGACGGAAGAGGAAATTGAGAGCAAATAATTAACGAGTGTTTGTGATTAGCGATCAACATAAGGACCGAAGCGTGGAGGGAGTACTAACCGACCACATAGGTAGGTCAAAACTGTTTCTTGTGATCTACGATAGTCAACTTCTACTAAGTTACTCATCAGATCTATTGTTCGATGTTTTTTTTCTAACAAATCTAGATCTCAACAGTTGTTCTGGTAGCAATAGACAATACCGTAAAACCTGTATTAGAAGGGTACCTCTAATAGAAGGGCCCTCCGGAGGTACCTTGGAACAATACAAGTGCCCGCCCATCTAATATAGGTTTTACGGTATTTAAAGTTTCATGTACTCGCTACTACCGTAGGAAAACCAGGAAATGTTTCTGAATCTTCTACTTATACTGGTTTTTATCTTCTAAAAGCTCTTCACCAGATATCTTTAACCTTTCATTCTCATGCTCTATGTTTTGCTCATTCATGTCACTTGCTCTTTTTTCTTCTTCCTGCTGATATGTTTGATCTAGTTTTCTCTGCCAGTTTTTCTTTACCCAACCAAGTGGCTTGTTATCCCGTTAGAACCAAAATGCTCTTTTCTCCACATCGTTTGCACCATCCGTTTATATTGTTGACCTCGGGAAAAATCTGTCGCAACGACTATCACTTTTTGTGGAACTTATGTCCTAGCGCCAAGCTTTCTATCTTTTTGCTGCTCTCTTTTTCAACTCTTTTGGCACCAAACCAATAATTCCAGAGCTGAATTGAAGTGACGAAAAAGATTTACAGGATGTTTCAGATATTCCAAAAA</canonical>
            <polymorphic>CTTCTGGTATGACGTTATTTGAGATCCGGGGAAGTCGCTAACTTTTTGGAATTCGTTCATTTCGGATTCGAATAAGACGAAGCAAGTGTACACGGGGTTGAGTGATTGAACTTTTTTCTTTTCGATTACAACTACCAGTACATTCGTTTTGCCACCATCTTTACAAAGGACTAATGAAAATAGTGTGTTGATTAGAGAGACGGAAGAGGAAATTGAGAGCAAATAATTAACGAGTGTTTGTGATTAGCGATCAACATAAGGACCGAAGCGTGGAGGGAGTACTAACCGACCACATAGGTAGGTCAAAACTGTTTCTTGTGATCTACGATAGTCAACTTCTACTAAGTTACTCATCAGATCTATTGTTCGATGTTTTTTTTCTAACAAATCTAGATCTCAACAGTTGTTCTGGTAGCAATAGACAATACCGTAAAACCTGTATTAGAAGGGTACCTCTAATAGAAGGGCCCTCCGGAGGTACCTTGGAACAATACAAGTGSCCGCCCATCTAATATAGGTTTTACGGTATTTAAAGTTTCATGTACTCGCTACTACCGTAGGAAAACCAGGAAATGTTTCTGAATCTTCTACTTATACTGGTTTTTATCTTCTAAAAGCTCTTCACCAGATATCTTTAACCTTTCATTCTCATGCTCTATGTTTTGCTCATTCATGTCACTTGCTCTTTTTTCTTCTTCCTGCTGATATGTTTGATCTAGTTTTCTCTGCCAGTTTTTCTTTACCCAACCAAGTGGCTTGTTATCCCGTTAGAACCAAAATGCTCTTTTCTCCACATCGTTTGCACCATCCGTTTATATTGTTGACCTCGGGAAAAATCTGTCGCAACGACTATCACTTTTTGTGGAACTTATGTCCTAGCGCCAAGCTTTCTATCTTTTTGCTGCTCTCTTTTTCAACTCTTTTGGCACCAAACCAATAATTCCAGAGCTGAATTGAAGTGACGAAAAAGATTTACAGGATGTTTCAGATATTCCAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>499 469 32</canonical_bands>
                <polymorphic_bands>531 469</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>499 469 32</canonical_bands>
                <polymorphic_bands>531 469</polymorphic_bands>
            </assay>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCAATAGACAATACCGTAAAAC</pcr_primer_p1>
		<pcr_primer_p2>AACATAGAGCATGAGAATGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGCAATAGACAATACCGTAAAACCTGTATTAGAAGGGTACCTCTAATAGAAGGGCCCTCCGGAGGTACCTTGGAACAATACAAGTGCCCGCCCATCTAATATAGGTTTTACGGTATTTAAAGTTTCATGTACTCGCTACTACCGTAGGAAAACCAGGAAATGTTTCTGAATCTTCTACTTATACTGGTTTTTATCTTCTAAAAGCTCTTCACCAGATATCTTTAACCTTTCATTCTCATGCTCTATGTT</canonical_amplicon>
		<polymorphic_amplicon>AGCAATAGACAATACCGTAAAACCTGTATTAGAAGGGTACCTCTAATAGAAGGGCCCTCCGGAGGTACCTTGGAACAATACAAGTGSCCGCCCATCTAATATAGGTTTTACGGTATTTAAAGTTTCATGTACTCGCTACTACCGTAGGAAAACCAGGAAATGTTTCTGAATCTTCTACTTATACTGGTTTTTATCTTCTAAAAGCTCTTCACCAGATATCTTTAACCTTTCATTCTCATGCTCTATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39583</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>142836</contig_pos>
        <strand></strand>
        <context>tacaagtgsc[C/T]gcccatctaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ACCTCTAATAGAAGGGCCCTCCGGAGGTACCTTGGAACAATACAAGTGCC</left_flank>
        <right_flank>GCCCATCTAATATAGGTTTTACGGTATTTAAAGTTTCATGTACTCGCTAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTGGTATGACGTTATTTGAGATCCGGGGAAGTCGCTAACTTTTTGGAATTCGTTCATTTCGGATTCGAATAAGACGAAGCAAGTGTACACGGGGTTGAGTGATTGAACTTTTTTCTTTTCGATTACAACTACCAGTACATTCGTTTTGCCACCATCTTTACAAAGGACTAATGAAAATAGTGTGTTGATTAGAGAGACGGAAGAGGAAATTGAGAGCAAATAATTAACGAGTGTTTGTGATTAGCGATCAACATAAGGACCGAAGCGTGGAGGGAGTACTAACCGACCACATAGGTAGGTCAAAACTGTTTCTTGTGATCTACGATAGTCAACTTCTACTAAGTTACTCATCAGATCTATTGTTCGATGTTTTTTTTCTAACAAATCTAGATCTCAACAGTTGTTCTGGTAGCAATAGACAATACCGTAAAACCTGTATTAGAAGGGTACCTCTAATAGAAGGGCCCTCCGGAGGTACCTTGGAACAATACAAGTGCCCGCCCATCTAATATAGGTTTTACGGTATTTAAAGTTTCATGTACTCGCTACTACCGTAGGAAAACCAGGAAATGTTTCTGAATCTTCTACTTATACTGGTTTTTATCTTCTAAAAGCTCTTCACCAGATATCTTTAACCTTTCATTCTCATGCTCTATGTTTTGCTCATTCATGTCACTTGCTCTTTTTTCTTCTTCCTGCTGATATGTTTGATCTAGTTTTCTCTGCCAGTTTTTCTTTACCCAACCAAGTGGCTTGTTATCCCGTTAGAACCAAAATGCTCTTTTCTCCACATCGTTTGCACCATCCGTTTATATTGTTGACCTCGGGAAAAATCTGTCGCAACGACTATCACTTTTTGTGGAACTTATGTCCTAGCGCCAAGCTTTCTATCTTTTTGCTGCTCTCTTTTTCAACTCTTTTGGCACCAAACCAATAATTCCAGAGCTGAATTGAAGTGACGAAAAAGATTTACAGGATGTTTCAGATATTCCAAAAAGC</canonical>
            <polymorphic>TCTGGTATGACGTTATTTGAGATCCGGGGAAGTCGCTAACTTTTTGGAATTCGTTCATTTCGGATTCGAATAAGACGAAGCAAGTGTACACGGGGTTGAGTGATTGAACTTTTTTCTTTTCGATTACAACTACCAGTACATTCGTTTTGCCACCATCTTTACAAAGGACTAATGAAAATAGTGTGTTGATTAGAGAGACGGAAGAGGAAATTGAGAGCAAATAATTAACGAGTGTTTGTGATTAGCGATCAACATAAGGACCGAAGCGTGGAGGGAGTACTAACCGACCACATAGGTAGGTCAAAACTGTTTCTTGTGATCTACGATAGTCAACTTCTACTAAGTTACTCATCAGATCTATTGTTCGATGTTTTTTTTCTAACAAATCTAGATCTCAACAGTTGTTCTGGTAGCAATAGACAATACCGTAAAACCTGTATTAGAAGGGTACCTCTAATAGAAGGGCCCTCCGGAGGTACCTTGGAACAATACAAGTGCCYGCCCATCTAATATAGGTTTTACGGTATTTAAAGTTTCATGTACTCGCTACTACCGTAGGAAAACCAGGAAATGTTTCTGAATCTTCTACTTATACTGGTTTTTATCTTCTAAAAGCTCTTCACCAGATATCTTTAACCTTTCATTCTCATGCTCTATGTTTTGCTCATTCATGTCACTTGCTCTTTTTTCTTCTTCCTGCTGATATGTTTGATCTAGTTTTCTCTGCCAGTTTTTCTTTACCCAACCAAGTGGCTTGTTATCCCGTTAGAACCAAAATGCTCTTTTCTCCACATCGTTTGCACCATCCGTTTATATTGTTGACCTCGGGAAAAATCTGTCGCAACGACTATCACTTTTTGTGGAACTTATGTCCTAGCGCCAAGCTTTCTATCTTTTTGCTGCTCTCTTTTTCAACTCTTTTGGCACCAAACCAATAATTCCAGAGCTGAATTGAAGTGACGAAAAAGATTTACAGGATGTTTCAGATATTCCAAAAAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>501 467 32</canonical_bands>
                <polymorphic_bands>533 467</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>501 467 32</canonical_bands>
                <polymorphic_bands>533 467</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGCAATAGACAATACCGTAAAAC</pcr_primer_p1>
		<pcr_primer_p2>AACATAGAGCATGAGAATGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AGCAATAGACAATACCGTAAAACCTGTATTAGAAGGGTACCTCTAATAGAAGGGCCCTCCGGAGGTACCTTGGAACAATACAAGTGCCCGCCCATCTAATATAGGTTTTACGGTATTTAAAGTTTCATGTACTCGCTACTACCGTAGGAAAACCAGGAAATGTTTCTGAATCTTCTACTTATACTGGTTTTTATCTTCTAAAAGCTCTTCACCAGATATCTTTAACCTTTCATTCTCATGCTCTATGTT</canonical_amplicon>
		<polymorphic_amplicon>AGCAATAGACAATACCGTAAAACCTGTATTAGAAGGGTACCTCTAATAGAAGGGCCCTCCGGAGGTACCTTGGAACAATACAAGTGCCYGCCCATCTAATATAGGTTTTACGGTATTTAAAGTTTCATGTACTCGCTACTACCGTAGGAAAACCAGGAAATGTTTCTGAATCTTCTACTTATACTGGTTTTTATCTTCTAAAAGCTCTTCACCAGATATCTTTAACCTTTCATTCTCATGCTCTATGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39584</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>155916</contig_pos>
        <strand>+</strand>
        <context>AGTATTGTCT[A/T]TTTTTGCTGA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CATCTGAGGTTCAAAGGATTAAAATTCGTTCTCAGTAGTCAGTATTGTCT</left_flank>
        <right_flank>TTTTTGCTGAAAATGCCCCGGAGATTAATGTGGAATTGAAGCGTTGAATC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAGAGGAAGAGAGGAGAAGAGGAGCCTTGAATTTCTTGCATCCCTTCTGTGAAACGTCTTTCGCTTTTTGTCAGACTTCTGAATCTGTTCTTGTTATCGTCATCACCAGAAAGAGCATATCTTCTTCGATCTTTGAATCTAAATTTTATGATGAGAGGTTAACTCGGCGTGAGAGGGGTACTCATCTAAATTATATCTCCTATTCTGCGTGCATCAGAATAGGAAGAAGAATAGAATAGTTGAGAGAAGAAGAAGAAGAACTAGTAGTCGTAGAAGGACTGAAGGACATAAGAATAGAAGCGCAGAGGCAAAAGGACCCTCTCGTGTCGCTTCTTCTTTTTGTTGCCATTTCAATTACATTTTCACGCACGTGTAAGGAGAAACATTTCTGAACTGCTCACACATAAAAAAGAGGATAACTGAAAGCCGTTTTTGCTTTCTTTGAGTTCATCTGAGGTTCAAAGGATTAAAATTCGTTCTCAGTAGTCAGTATTGTCTTTTTTTGCTGAAAATGCCCCGGAGATTAATGTGGAATTGAAGCGTTGAATCTATCTAGGCTATACTTTTTACCACTAGCTTCAAATAAGGATAATGTGAACTTTTCTGTGACTTGATAAAATCTGAGCCAAGTTTTCTATTGTGATATTTTACCGTAAAACCTGTAATAAAAGAGCCCATAACCGTTTTTGCTGTCACTTGAACCATTTAAGCCATTTTTGACACCTTTTGGCCATTCGAGACTATTTTCAAAGCCGTTTTCGGACTATTTAGGGTCATTTTCTGCAAGTTATAAATTGAGCCGATTTTTCTCGGTTCTTGTCGAAAATTTAAAAATGTTGTCAACTTATAAAATTTTTATTAGAATTTCAATAATATTTTGTCAGTTGACCACTTTTTGATATCTTCCATAGGAAATTTAATAAATTAGCTCAAACTTGACTGGGTGGGCGCCCTTGTAATACAGGTTTCAAGATAATTCTATCGAGATCAGTTCATTTT</canonical>
            <polymorphic>GAAGAGGAAGAGAGGAGAAGAGGAGCCTTGAATTTCTTGCATCCCTTCTGTGAAACGTCTTTCGCTTTTTGTCAGACTTCTGAATCTGTTCTTGTTATCGTCATCACCAGAAAGAGCATATCTTCTTCGATCTTTGAATCTAAATTTTATGATGAGAGGTTAACTCGGCGTGAGAGGGGTACTCATCTAAATTATATCTCCTATTCTGCGTGCATCAGAATAGGAAGAAGAATAGAATAGTTGAGAGAAGAAGAAGAAGAACTAGTAGTCGTAGAAGGACTGAAGGACATAAGAATAGAAGCGCAGAGGCAAAAGGACCCTCTCGTGTCGCTTCTTCTTTTTGTTGCCATTTCAATTACATTTTCACGCACGTGTAAGGAGAAACATTTCTGAACTGCTCACACATAAAAAAGAGGATAACTGAAAGCCGTTTTTGCTTTCTTTGAGTTCATCTGAGGTTCAAAGGATTAAAATTCGTTCTCAGTAGTCAGTATTGTCTWTTTTTGCTGAAAATGCCCCGGAGATTAATGTGGAATTGAAGCGTTGAATCTATCTAGGCTATACTTTTTACCACTAGCTTCAAATAAGGATAATGTGAACTTTTCTGTGACTTGATAAAATCTGAGCCAAGTTTTCTATTGTGATATTTTACCGTAAAACCTGTAATAAAAGAGCCCATAACCGTTTTTGCTGTCACTTGAACCATTTAAGCCATTTTTGACACCTTTTGGCCATTCGAGACTATTTTCAAAGCCGTTTTCGGACTATTTAGGGTCATTTTCTGCAAGTTATAAATTGAGCCGATTTTTCTCGGTTCTTGTCGAAAATTTAAAAATGTTGTCAACTTATAAAATTTTTATTAGAATTTCAATAATATTTTGTCAGTTGACCACTTTTTGATATCTTCCATAGGAAATTTAATAAATTAGCTCAAACTTGACTGGGTGGGCGCCCTTGTAATACAGGTTTCAAGATAATTCTATCGAGATCAGTTCATTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGCCATTTCAATTACATTTT</pcr_primer_p1>
		<pcr_primer_p2>TCCTTATTTGAAGCTAGTGGTAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GTTGCCATTTCAATTACATTTTCACGCACGTGTAAGGAGAAACATTTCTGAACTGCTCACACATAAAAAAGAGGATAACTGAAAGCCGTTTTTGCTTTCTTTGAGTTCATCTGAGGTTCAAAGGATTAAAATTCGTTCTCAGTAGTCAGTATTGTCTTTTTTTGCTGAAAATGCCCCGGAGATTAATGTGGAATTGAAGCGTTGAATCTATCTAGGCTATACTTTTTACCACTAGCTTCAAATAAGGA</canonical_amplicon>
		<polymorphic_amplicon>GTTGCCATTTCAATTACATTTTCACGCACGTGTAAGGAGAAACATTTCTGAACTGCTCACACATAAAAAAGAGGATAACTGAAAGCCGTTTTTGCTTTCTTTGAGTTCATCTGAGGTTCAAAGGATTAAAATTCGTTCTCAGTAGTCAGTATTGTCTWTTTTTGCTGAAAATGCCCCGGAGATTAATGTGGAATTGAAGCGTTGAATCTATCTAGGCTATACTTTTTACCACTAGCTTCAAATAAGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39585</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>176307</contig_pos>
        <strand>+</strand>
        <context>GAGTGAGTAK[G/T]CTCCAAATCA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATGACATGGGTTGGAGGATTCAAGGCTAGCGAGAATGGAGAGTGAGTAT</left_flank>
        <right_flank>CTCCAAATCAAATGAGCTTGTATTCTATAATATTCAGTCTTTCACTTCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCTCTGAAAATGGTGGAAAAGATTTGAGACATGATTCTAATTTTATGGTGAGCTTTAAAGAAGTACTGTAATAATTTGGATTTTTTGAATAAAACATAGGAACTTTGCAGTAAGTTTTTTGATGTTAATCCTAAAATTTTTTTATCCAAAAATCCATAATTAGTTGCACTCTTTAAAAAAGACAAACCCAAAAACTGATCATCGAAATTCCACCGTATGAATTTATCTTTTCCCACAAACCTGCTTTGCTAACGTTTCCGTTATAAAGTGCGATGTCTATTTGAACTGATAAGAAGATAAAACATGTTTCTTTACAGGCCGGTCCAGATGGAGATGATGGTTTCTTCCGTGAGGGAGATCTTGCACGTGTTCGTGTTCGCCATTCAGATGCTCCTGCTCAGATGGCTAACTGCCCAAGAGAATTCTCTTCCTCTACTTGCTCAAACCCAATGACATGGGTTGGAGGATTCAAGGCTAGCGAGAATGGAGAGTGAGTATTCTCCAAATCAAATGAGCTTGTATTCTATAATATTCAGTCTTTCACTTCAATGCTGTCATTACGAAGGACTTCGTTTTGCTCAAGAAGTCGGACGTCCAGTTGTTCATCCAGGAGAGGTTTATTCCGGAGGAGAAGTTCTTCGTGATGGACGTCAAACTGGATTCGATGCTATTTCAAATGTTAAGAAGATCACTTCTGGGGACGGAACGTAAGTTAAATCTTCACCCAGTTCACATATAAAATCAATCCGTTTTAGTGTTGCCTATGAACTTACCGTAACCCGTATGAACTGCCTCCCAAATCCAGCTGAAGACACCAATGAAGTCTCATTCGATATTCAGAGAGACATTGGAAGAATTCTTGAGAAAGTCGGAGAAACTGCTGCCAGCGGAGTTCAAACCAACCAAATTGAAGCTGACCAACGTCTTTCTCCATCCACTGATGTCCAATCTGATTCCTATAAATCTGATTCCTATGTAGCACCACCTGAGTCTGACCAA</canonical>
            <polymorphic>GGCTCTGAAAATGGTGGAAAAGATTTGAGACATGATTCTAATTTTATGGTGAGCTTTAAAGAAGTACTGTAATAATTTGGATTTTTTGAATAAAACATAGGAACTTTGCAGTAAGTTTTTTGATGTTAATCCTAAAATTTTTTTATCCAAAAATCCATAATTAGTTGCACTCTTTAAAAAAGACAAACCCAAAAACTGATCATCGAAATTCCACCGTATGAATTTATCTTTTCCCACAAACCTGCTTTGCTAACGTTTCCGTTATAAAGTGCGATGTCTATTTGAACTGATAAGAAGATAAAACATGTTTCTTTACAGGCCGGTCCAGATGGAGATGATGGTTTCTTCCGTGAGGGAGATCTTGCACGTGTTCGTGTTCGCCATTCAGATGCTCCTGCTCAGATGGCTAACTGCCCAAGAGAATTCTCTTCCTCTACTTGCTCAAACCCAATGACATGGGTTGGAGGATTCAAGGCTAGCGAGAATGGAGAGTGAGTATKCTCCAAATCAAATGAGCTTGTATTCTATAATATTCAGTCTTTCACTTCAATGCTGTCATTACGAAGGACTTCGTTTTGCTCAAGAAGTCGGACGTCCAGTTGTTCATCCAGGAGAGGTTTATTCCGGAGGAGAAGTTCTTCGTGATGGACGTCAAACTGGATTCGATGCTATTTCAAATGTTAAGAAGATCACTTCTGGGGACGGAACGTAAGTTAAATCTTCACCCAGTTCACATATAAAATCAATCCGTTTTAGTGTTGCCTATGAACTTACCGTAACCCGTATGAACTGCCTCCCAAATCCAGCTGAAGACACCAATGAAGTCTCATTCGATATTCAGAGAGACATTGGAAGAATTCTTGAGAAAGTCGGAGAAACTGCTGCCAGCGGAGTTCAAACCAACCAAATTGAAGCTGACCAACGTCTTTCTCCATCCACTGATGTCCAATCTGATTCCTATAAATCTGATTCCTATGTAGCACCACCTGAGTCTGACCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTCTTCCTCTACTTGCTCAAAC</pcr_primer_p1>
		<pcr_primer_p2>GAAATAGCATCGAATCCAGT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTCTTCCTCTACTTGCTCAAACCCAATGACATGGGTTGGAGGATTCAAGGCTAGCGAGAATGGAGAGTGAGTATTCTCCAAATCAAATGAGCTTGTATTCTATAATATTCAGTCTTTCACTTCAATGCTGTCATTACGAAGGACTTCGTTTTGCTCAAGAAGTCGGACGTCCAGTTGTTCATCCAGGAGAGGTTTATTCCGGAGGAGAAGTTCTTCGTGATGGACGTCAAACTGGATTCGATGCTATTTC</canonical_amplicon>
		<polymorphic_amplicon>CTCTTCCTCTACTTGCTCAAACCCAATGACATGGGTTGGAGGATTCAAGGCTAGCGAGAATGGAGAGTGAGTATKCTCCAAATCAAATGAGCTTGTATTCTATAATATTCAGTCTTTCACTTCAATGCTGTCATTACGAAGGACTTCGTTTTGCTCAAGAAGTCGGACGTCCAGTTGTTCATCCAGGAGAGGTTTATTCCGGAGGAGAAGTTCTTCGTGATGGACGTCAAACTGGATTCGATGCTATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39586</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>178239</contig_pos>
        <strand>+</strand>
        <context>CTTATGAGGT[C/T]TGGGTTTCTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGTTCTTTCTATGCGTCTTTTTCAATTATATTAATCGTACTTATGAGGT</left_flank>
        <right_flank>TGGGTTTCTATTCCGTTGGAAACGAAATTTCAACACAGTTATTTCATTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGTGGCTCAATCGGTACAGTAACCCACCCGCTTCTGCTTAGCCGCCGTTCAGCCGCCAATCGTTCATCTGGAACAACAGAGAGGTTCTCGACAAAAATTAAATCGTTAAAAGTTGATTTCTTGATTATTCTGACAAAAATCTTTAAAATACCTGTTTTTCCCATTTTGGAGTGGCTCGCAGACGGATCATTGTGTGCCCTCTGTTTTTAGTCGCTACTCTCCAATTATTGGGAATATTGGGAGGGTAGCGACTAAAATCGCCGAAGGGCTAAAAAATAAATACTTTTCTATCAGAAAAATCAAAAAATCAACTTTTAACAATATAATTTTTCTTGGAAACCTCTCTGTTATTCCGAACGGACGATTGGCGGCTGAACGGCGGCTGAGGCTACTGACGGGTGAAAGTAGGAAGAGATTGAAAAATGATTTTTTGTCTATTTTGATATTCTTCGTTCTTTCTATGCGTCTTTTTCAATTATATTAATCGTACTTATGAGGTCTGGGTTTCTATTCCGTTGGAAACGAAATTTCAACACAGTTATTTCATTTCTTTTCCATCATCATGAGCCCATCTTCCCAATCCTATGATAATTGAAAAATATTCATTATTATCATTATCATTGAAATTATTAAATGTACAAACTCGTTTTGATAGGGACTCATTGGATTGAGTGAATGGAGGGGAATGAAAAAGGGAAAGATCATCGAAATTGATAGGAAAGAAGAAAAGAAAGAAGTCTAGATAAATGGATAACACGAGTTTAGGACCGACGAACTCCGGTGGATTGTCTTGGGAAGTGTGGTGGGCGATAACGAAGTGGGTTGAAGGCTTTTGGCTCTGGAGTTGTCTGAAATAAGAAAAGTTTATTTATGTCAAAAATACAATCAACTAACCGTAACCTCCTCTTCCTCGTCCTCCTCCTCAACTTCTTCCTCTCCGTCGTTGCTCTCAACAACTTCAGCTACATTCTCATTTGTTTGTTCTTCTCCTTCCAATTGC</canonical>
            <polymorphic>CGTGGCTCAATCGGTACAGTAACCCACCCGCTTCTGCTTAGCCGCCGTTCAGCCGCCAATCGTTCATCTGGAACAACAGAGAGGTTCTCGACAAAAATTAAATCGTTAAAAGTTGATTTCTTGATTATTCTGACAAAAATCTTTAAAATACCTGTTTTTCCCATTTTGGAGTGGCTCGCAGACGGATCATTGTGTGCCCTCTGTTTTTAGTCGCTACTCTCCAATTATTGGGAATATTGGGAGGGTAGCGACTAAAATCGCCGAAGGGCTAAAAAATAAATACTTTTCTATCAGAAAAATCAAAAAATCAACTTTTAACAATATAATTTTTCTTGGAAACCTCTCTGTTATTCCGAACGGACGATTGGCGGCTGAACGGCGGCTGAGGCTACTGACGGGTGAAAGTAGGAAGAGATTGAAAAATGATTTTTTGTCTATTTTGATATTCTTCGTTCTTTCTATGCGTCTTTTTCAATTATATTAATCGTACTTATGAGGTYTGGGTTTCTATTCCGTTGGAAACGAAATTTCAACACAGTTATTTCATTTCTTTTCCATCATCATGAGCCCATCTTCCCAATCCTATGATAATTGAAAAATATTCATTATTATCATTATCATTGAAATTATTAAATGTACAAACTCGTTTTGATAGGGACTCATTGGATTGAGTGAATGGAGGGGAATGAAAAAGGGAAAGATCATCGAAATTGATAGGAAAGAAGAAAAGAAAGAAGTCTAGATAAATGGATAACACGAGTTTAGGACCGACGAACTCCGGTGGATTGTCTTGGGAAGTGTGGTGGGCGATAACGAAGTGGGTTGAAGGCTTTTGGCTCTGGAGTTGTCTGAAATAAGAAAAGTTTATTTATGTCAAAAATACAATCAACTAACCGTAACCTCCTCTTCCTCGTCCTCCTCCTCAACTTCTTCCTCTCCGTCGTTGCTCTCAACAACTTCAGCTACATTCTCATTTGTTTGTTCTTCTCCTTCCAATTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTGATATTCTTCGTTCTTTCT</pcr_primer_p1>
		<pcr_primer_p2>CTCAATCCAATGAGTCCCTAT</pcr_primer_p2>
		<pcr_amplicon_size>235</pcr_amplicon_size>
		<canonical_amplicon>TTTTGATATTCTTCGTTCTTTCTATGCGTCTTTTTCAATTATATTAATCGTACTTATGAGGTCTGGGTTTCTATTCCGTTGGAAACGAAATTTCAACACAGTTATTTCATTTCTTTTCCATCATCATGAGCCCATCTTCCCAATCCTATGATAATTGAAAAATATTCATTATTATCATTATCATTGAAATTATTAAATGTACAAACTCGTTTTGATAGGGACTCATTGGATTGAG</canonical_amplicon>
		<polymorphic_amplicon>TTTTGATATTCTTCGTTCTTTCTATGCGTCTTTTTCAATTATATTAATCGTACTTATGAGGTYTGGGTTTCTATTCCGTTGGAAACGAAATTTCAACACAGTTATTTCATTTCTTTTCCATCATCATGAGCCCATCTTCCCAATCCTATGATAATTGAAAAATATTCATTATTATCATTATCATTGAAATTATTAAATGTACAAACTCGTTTTGATAGGGACTCATTGGATTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39587</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>178703</contig_pos>
        <strand></strand>
        <context>caacttcagc[T/C]acattctcat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCCTCCTCCTCAACTTCTTCCTCTCCGTCGTTGCTCTCAACAACTTCAGC</left_flank>
        <right_flank>ACATTCTCATTTGTTTGTTCTTCTCCTTCCAATTGCTCATTCTCATCCTC</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCTTTTTCAATTATATTAATCGTACTTATGAGGTCTGGGTTTCTATTCCGTTGGAAACGAAATTTCAACACAGTTATTTCATTTCTTTTCCATCATCATGAGCCCATCTTCCCAATCCTATGATAATTGAAAAATATTCATTATTATCATTATCATTGAAATTATTAAATGTACAAACTCGTTTTGATAGGGACTCATTGGATTGAGTGAATGGAGGGGAATGAAAAAGGGAAAGATCATCGAAATTGATAGGAAAGAAGAAAAGAAAGAAGTCTAGATAAATGGATAACACGAGTTTAGGACCGACGAACTCCGGTGGATTGTCTTGGGAAGTGTGGTGGGCGATAACGAAGTGGGTTGAAGGCTTTTGGCTCTGGAGTTGTCTGAAATAAGAAAAGTTTATTTATGTCAAAAATACAATCAACTAACCGTAACCTCCTCTTCCTCGTCCTCCTCCTCAACTTCTTCCTCTCCGTCGTTGCTCTCAACAACTTCAGCTACATTCTCATTTGTTTGTTCTTCTCCTTCCAATTGCTCATTCTCATCCTCTTCCTCCTCAACAACTGGTGTAGTTGGTTCTGGAGTGGTCGTCTTGACAACCTTTGGAACAGCTGTGGTAGTGATTGGCTCAAAGTCAACTGGCTTCTCTCCCTTAGCACAAATCATACGGTAAACCCAAACACGGACTCCTCCTCTACAAAATTTCAAAACTAAATACAATTTATCTCATTCGTATAACTCACTGTTCAGTTCTGGCGTTAGCAACAAAATCGTATTCGGCTCCTCCCTTGTCTCCGTAAAGATCCTTCTCGGCAACTTCTCCACCCTCGTAGAAGCTTCCAGCAGACACAACATCAGTTCCAACATAGATCTTATTCTTGGCTTGCATGGTACAGCAACGGAGCAGGATACTCTCACCGTTTGGAGCCCATCTCATTCCGGAGAAGACATCGGTCTCGGCACGGCAAGATGTTTGATCCTAAAGAAGAAATGAAAAAT</canonical>
            <polymorphic>GTCTTTTTCAATTATATTAATCGTACTTATGAGGTCTGGGTTTCTATTCCGTTGGAAACGAAATTTCAACACAGTTATTTCATTTCTTTTCCATCATCATGAGCCCATCTTCCCAATCCTATGATAATTGAAAAATATTCATTATTATCATTATCATTGAAATTATTAAATGTACAAACTCGTTTTGATAGGGACTCATTGGATTGAGTGAATGGAGGGGAATGAAAAAGGGAAAGATCATCGAAATTGATAGGAAAGAAGAAAAGAAAGAAGTCTAGATAAATGGATAACACGAGTTTAGGACCGACGAACTCCGGTGGATTGTCTTGGGAAGTGTGGTGGGCGATAACGAAGTGGGTTGAAGGCTTTTGGCTCTGGAGTTGTCTGAAATAAGAAAAGTTTATTTATGTCAAAAATACAATCAACTAACCGTAACCTCCTCTTCCTCGTCCTCCTCCTCAACTTCTTCCTCTCCGTCGTTGCTCTCAACAACTTCAGCYACATTCTCATTTGTTTGTTCTTCTCCTTCCAATTGCTCATTCTCATCCTCTTCCTCCTCAACAACTGGTGTAGTTGGTTCTGGAGTGGTCGTCTTGACAACCTTTGGAACAGCTGTGGTAGTGATTGGCTCAAAGTCAACTGGCTTCTCTCCCTTAGCACAAATCATACGGTAAACCCAAACACGGACTCCTCCTCTACAAAATTTCAAAACTAAATACAATTTATCTCATTCGTATAACTCACTGTTCAGTTCTGGCGTTAGCAACAAAATCGTATTCGGCTCCTCCCTTGTCTCCGTAAAGATCCTTCTCGGCAACTTCTCCACCCTCGTAGAAGCTTCCAGCAGACACAACATCAGTTCCAACATAGATCTTATTCTTGGCTTGCATGGTACAGCAACGGAGCAGGATACTCTCACCGTTTGGAGCCCATCTCATTCCGGAGAAGACATCGGTCTCGGCACGGCAAGATGTTTGATCCTAAAGAAGAAATGAAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>498 225 163 114</canonical_bands>
                <polymorphic_bands>612 225 163</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>262 138 126 114 103 72 56 46 45 16 15 7</canonical_bands>
                <polymorphic_bands>262 240 138 103 72 56 46 45 16 15 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTCAAAAATACAATCAACTAACC</pcr_primer_p1>
		<pcr_primer_p2>CTAAGGGAGAGAAGCCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTCAAAAATACAATCAACTAACCGTAACCTCCTCTTCCTCGTCCTCCTCCTCAACTTCTTCCTCTCCGTCGTTGCTCTCAACAACTTCAGCTACATTCTCATTTGTTTGTTCTTCTCCTTCCAATTGCTCATTCTCATCCTCTTCCTCCTCAACAACTGGTGTAGTTGGTTCTGGAGTGGTCGTCTTGACAACCTTTGGAACAGCTGTGGTAGTGATTGGCTCAAAGTCAACTGGCTTCTCTCCCTTAG</canonical_amplicon>
		<polymorphic_amplicon>TGTCAAAAATACAATCAACTAACCGTAACCTCCTCTTCCTCGTCCTCCTCCTCAACTTCTTCCTCTCCGTCGTTGCTCTCAACAACTTCAGCYACATTCTCATTTGTTTGTTCTTCTCCTTCCAATTGCTCATTCTCATCCTCTTCCTCCTCAACAACTGGTGTAGTTGGTTCTGGAGTGGTCGTCTTGACAACCTTTGGAACAGCTGTGGTAGTGATTGGCTCAAAGTCAACTGGCTTCTCTCCCTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39588</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>178751</contig_pos>
        <strand></strand>
        <context>cattctcatc[C/A]tcttcctyct</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GCTACATTCTCATTTGTTTGTTCTTCTCCTTCCAATTGCTCATTCTCATC</left_flank>
        <right_flank>TCTTCCTCCTCAACAACTGGTGTAGTTGGTTCTGGAGTGGTCGTCTTGAC</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCGTTGGAAACGAAATTTCAACACAGTTATTTCATTTCTTTTCCATCATCATGAGCCCATCTTCCCAATCCTATGATAATTGAAAAATATTCATTATTATCATTATCATTGAAATTATTAAATGTACAAACTCGTTTTGATAGGGACTCATTGGATTGAGTGAATGGAGGGGAATGAAAAAGGGAAAGATCATCGAAATTGATAGGAAAGAAGAAAAGAAAGAAGTCTAGATAAATGGATAACACGAGTTTAGGACCGACGAACTCCGGTGGATTGTCTTGGGAAGTGTGGTGGGCGATAACGAAGTGGGTTGAAGGCTTTTGGCTCTGGAGTTGTCTGAAATAAGAAAAGTTTATTTATGTCAAAAATACAATCAACTAACCGTAACCTCCTCTTCCTCGTCCTCCTCCTCAACTTCTTCCTCTCCGTCGTTGCTCTCAACAACTTCAGCTACATTCTCATTTGTTTGTTCTTCTCCTTCCAATTGCTCATTCTCATCCTCTTCCTCCTCAACAACTGGTGTAGTTGGTTCTGGAGTGGTCGTCTTGACAACCTTTGGAACAGCTGTGGTAGTGATTGGCTCAAAGTCAACTGGCTTCTCTCCCTTAGCACAAATCATACGGTAAACCCAAACACGGACTCCTCCTCTACAAAATTTCAAAACTAAATACAATTTATCTCATTCGTATAACTCACTGTTCAGTTCTGGCGTTAGCAACAAAATCGTATTCGGCTCCTCCCTTGTCTCCGTAAAGATCCTTCTCGGCAACTTCTCCACCCTCGTAGAAGCTTCCAGCAGACACAACATCAGTTCCAACATAGATCTTATTCTTGGCTTGCATGGTACAGCAACGGAGCAGGATACTCTCACCGTTTGGAGCCCATCTCATTCCGGAGAAGACATCGGTCTCGGCACGGCAAGATGTTTGATCCTAAAGAAGAAATGAAAAATAATGAAAGATAGGAGAATACGATTCTTACATCAATACAACGTCTTCCA</canonical>
            <polymorphic>CCGTTGGAAACGAAATTTCAACACAGTTATTTCATTTCTTTTCCATCATCATGAGCCCATCTTCCCAATCCTATGATAATTGAAAAATATTCATTATTATCATTATCATTGAAATTATTAAATGTACAAACTCGTTTTGATAGGGACTCATTGGATTGAGTGAATGGAGGGGAATGAAAAAGGGAAAGATCATCGAAATTGATAGGAAAGAAGAAAAGAAAGAAGTCTAGATAAATGGATAACACGAGTTTAGGACCGACGAACTCCGGTGGATTGTCTTGGGAAGTGTGGTGGGCGATAACGAAGTGGGTTGAAGGCTTTTGGCTCTGGAGTTGTCTGAAATAAGAAAAGTTTATTTATGTCAAAAATACAATCAACTAACCGTAACCTCCTCTTCCTCGTCCTCCTCCTCAACTTCTTCCTCTCCGTCGTTGCTCTCAACAACTTCAGCTACATTCTCATTTGTTTGTTCTTCTCCTTCCAATTGCTCATTCTCATCMTCTTCCTCCTCAACAACTGGTGTAGTTGGTTCTGGAGTGGTCGTCTTGACAACCTTTGGAACAGCTGTGGTAGTGATTGGCTCAAAGTCAACTGGCTTCTCTCCCTTAGCACAAATCATACGGTAAACCCAAACACGGACTCCTCCTCTACAAAATTTCAAAACTAAATACAATTTATCTCATTCGTATAACTCACTGTTCAGTTCTGGCGTTAGCAACAAAATCGTATTCGGCTCCTCCCTTGTCTCCGTAAAGATCCTTCTCGGCAACTTCTCCACCCTCGTAGAAGCTTCCAGCAGACACAACATCAGTTCCAACATAGATCTTATTCTTGGCTTGCATGGTACAGCAACGGAGCAGGATACTCTCACCGTTTGGAGCCCATCTCATTCCGGAGAAGACATCGGTCTCGGCACGGCAAGATGTTTGATCCTAAAGAAGAAATGAAAAATAATGAAAGATAGGAGAATACGATTCTTACATCAATACAACGTCTTCCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCAAAAATACAATCAACTAACC</pcr_primer_p1>
		<pcr_primer_p2>CTAAGGGAGAGAAGCCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTCAAAAATACAATCAACTAACCGTAACCTCCTCTTCCTCGTCCTCCTCCTCAACTTCTTCCTCTCCGTCGTTGCTCTCAACAACTTCAGCTACATTCTCATTTGTTTGTTCTTCTCCTTCCAATTGCTCATTCTCATCCTCTTCCTCCTCAACAACTGGTGTAGTTGGTTCTGGAGTGGTCGTCTTGACAACCTTTGGAACAGCTGTGGTAGTGATTGGCTCAAAGTCAACTGGCTTCTCTCCCTTAG</canonical_amplicon>
		<polymorphic_amplicon>TGTCAAAAATACAATCAACTAACCGTAACCTCCTCTTCCTCGTCCTCCTCCTCAACTTCTTCCTCTCCGTCGTTGCTCTCAACAACTTCAGCTACATTCTCATTTGTTTGTTCTTCTCCTTCCAATTGCTCATTCTCATCMTCTTCCTCCTCAACAACTGGTGTAGTTGGTTCTGGAGTGGTCGTCTTGACAACCTTTGGAACAGCTGTGGTAGTGATTGGCTCAAAGTCAACTGGCTTCTCTCCCTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39589</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>178759</contig_pos>
        <strand></strand>
        <context>tcmtcttcct[C/T]ctcAACAACT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCATTTGTTTGTTCTTCTCCTTCCAATTGCTCATTCTCATCCTCTTCCT</left_flank>
        <right_flank>CTCAACAACTGGTGTAGTTGGTTCTGGAGTGGTCGTCTTGACAACCTTTG</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACGAAATTTCAACACAGTTATTTCATTTCTTTTCCATCATCATGAGCCCATCTTCCCAATCCTATGATAATTGAAAAATATTCATTATTATCATTATCATTGAAATTATTAAATGTACAAACTCGTTTTGATAGGGACTCATTGGATTGAGTGAATGGAGGGGAATGAAAAAGGGAAAGATCATCGAAATTGATAGGAAAGAAGAAAAGAAAGAAGTCTAGATAAATGGATAACACGAGTTTAGGACCGACGAACTCCGGTGGATTGTCTTGGGAAGTGTGGTGGGCGATAACGAAGTGGGTTGAAGGCTTTTGGCTCTGGAGTTGTCTGAAATAAGAAAAGTTTATTTATGTCAAAAATACAATCAACTAACCGTAACCTCCTCTTCCTCGTCCTCCTCCTCAACTTCTTCCTCTCCGTCGTTGCTCTCAACAACTTCAGCTACATTCTCATTTGTTTGTTCTTCTCCTTCCAATTGCTCATTCTCATCCTCTTCCTCCTCAACAACTGGTGTAGTTGGTTCTGGAGTGGTCGTCTTGACAACCTTTGGAACAGCTGTGGTAGTGATTGGCTCAAAGTCAACTGGCTTCTCTCCCTTAGCACAAATCATACGGTAAACCCAAACACGGACTCCTCCTCTACAAAATTTCAAAACTAAATACAATTTATCTCATTCGTATAACTCACTGTTCAGTTCTGGCGTTAGCAACAAAATCGTATTCGGCTCCTCCCTTGTCTCCGTAAAGATCCTTCTCGGCAACTTCTCCACCCTCGTAGAAGCTTCCAGCAGACACAACATCAGTTCCAACATAGATCTTATTCTTGGCTTGCATGGTACAGCAACGGAGCAGGATACTCTCACCGTTTGGAGCCCATCTCATTCCGGAGAAGACATCGGTCTCGGCACGGCAAGATGTTTGATCCTAAAGAAGAAATGAAAAATAATGAAAGATAGGAGAATACGATTCTTACATCAATACAACGTCTTCCAACTTCACC</canonical>
            <polymorphic>AACGAAATTTCAACACAGTTATTTCATTTCTTTTCCATCATCATGAGCCCATCTTCCCAATCCTATGATAATTGAAAAATATTCATTATTATCATTATCATTGAAATTATTAAATGTACAAACTCGTTTTGATAGGGACTCATTGGATTGAGTGAATGGAGGGGAATGAAAAAGGGAAAGATCATCGAAATTGATAGGAAAGAAGAAAAGAAAGAAGTCTAGATAAATGGATAACACGAGTTTAGGACCGACGAACTCCGGTGGATTGTCTTGGGAAGTGTGGTGGGCGATAACGAAGTGGGTTGAAGGCTTTTGGCTCTGGAGTTGTCTGAAATAAGAAAAGTTTATTTATGTCAAAAATACAATCAACTAACCGTAACCTCCTCTTCCTCGTCCTCCTCCTCAACTTCTTCCTCTCCGTCGTTGCTCTCAACAACTTCAGCTACATTCTCATTTGTTTGTTCTTCTCCTTCCAATTGCTCATTCTCATCCTCTTCCTYCTCAACAACTGGTGTAGTTGGTTCTGGAGTGGTCGTCTTGACAACCTTTGGAACAGCTGTGGTAGTGATTGGCTCAAAGTCAACTGGCTTCTCTCCCTTAGCACAAATCATACGGTAAACCCAAACACGGACTCCTCCTCTACAAAATTTCAAAACTAAATACAATTTATCTCATTCGTATAACTCACTGTTCAGTTCTGGCGTTAGCAACAAAATCGTATTCGGCTCCTCCCTTGTCTCCGTAAAGATCCTTCTCGGCAACTTCTCCACCCTCGTAGAAGCTTCCAGCAGACACAACATCAGTTCCAACATAGATCTTATTCTTGGCTTGCATGGTACAGCAACGGAGCAGGATACTCTCACCGTTTGGAGCCCATCTCATTCCGGAGAAGACATCGGTCTCGGCACGGCAAGATGTTTGATCCTAAAGAAGAAATGAAAAATAATGAAAGATAGGAGAATACGATTCTTACATCAATACAACGTCTTCCAACTTCACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGTCAAAAATACAATCAACTAACC</pcr_primer_p1>
		<pcr_primer_p2>CTAAGGGAGAGAAGCCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TGTCAAAAATACAATCAACTAACCGTAACCTCCTCTTCCTCGTCCTCCTCCTCAACTTCTTCCTCTCCGTCGTTGCTCTCAACAACTTCAGCTACATTCTCATTTGTTTGTTCTTCTCCTTCCAATTGCTCATTCTCATCCTCTTCCTCCTCAACAACTGGTGTAGTTGGTTCTGGAGTGGTCGTCTTGACAACCTTTGGAACAGCTGTGGTAGTGATTGGCTCAAAGTCAACTGGCTTCTCTCCCTTAG</canonical_amplicon>
		<polymorphic_amplicon>TGTCAAAAATACAATCAACTAACCGTAACCTCCTCTTCCTCGTCCTCCTCCTCAACTTCTTCCTCTCCGTCGTTGCTCTCAACAACTTCAGCTACATTCTCATTTGTTTGTTCTTCTCCTTCCAATTGCTCATTCTCATCCTCTTCCTYCTCAACAACTGGTGTAGTTGGTTCTGGAGTGGTCGTCTTGACAACCTTTGGAACAGCTGTGGTAGTGATTGGCTCAAAGTCAACTGGCTTCTCTCCCTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39590</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>182815</contig_pos>
        <strand>+</strand>
        <context>TCTTGCAAAC[A/T]TTTTTTGTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAAGATATGAGGAATCTGCTTTTTGATAGTCACTTTTCGTTCTTGCAAAC</left_flank>
        <right_flank>TTTTTTGTTTTTCTTTATTTTTAAAAGATTACTGTAATTTTAATATATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTTCTGGGAAAAAGTACAAAACTAAACATTTCAACTAGCATATTTCATGAGACCTGTACACATTCATTGATTTTCTGTAAATAAATATGTTCTAATTTTCTGATTTTCAACAAAACACACTGCATGAAGTAAACTATTGGACATCCTGGTCTCCTCTTCGTTTTCAGAGAATTTAGTAAATCTGAAACTCGAGGAAATATTCTAACAATATTCTTTCAGGACAATACATTTGATGGTACGGAAAGCGAAATTTCAAACATAGGTGGAACTTCTCCATCCTATCCAGTTGCATATAAGAATCGGCCACCGAAACCAAAAAGAATGGAGATTCTGGAAGAAGTTCAAGTCGAGGAGTATACTCCGGAACCTTCTCCAGCGCCAAGAAGAATATTCAAGTCTGCAGTTCATCAGTCAGATGCAAGCCTGTCGGCTAAGGGAAATTCGTTGTCAAGATATGAGGAATCTGCTTTTTGATAGTCACTTTTCGTTCTTGCAAACTTTTTTTGTTTTTCTTTATTTTTAAAAGATTACTGTAATTTTAATATATTTTTATGTCTCTCGTGTTCGTAAATGAAAGAATGCTCACACATTTTTGCAGGTCAAAATATTAGTGAAATATATTAAAATTGATTTCAAAACATAGCTTTATGCAAATATTTGGCTCAAAAAACTTCTGAACTCGATTTTATTTGCGGAATGTGCTGATCGCTGTGGGAGATTTTACTTTTTGCTAGTTGCGCCTTTAAAGTGAGCTACGGTTATTGATCGGTGCGGCGTTCATATTTCGCGTTTTTGAACGTTTTTGAATAATTTTCCTGAATTAAAGAGAAAGAGAAAAGCAGCAATCATTTTTTTTCGGTTTTTTTTCATTCTTTTGAGAATTTTTCTTGTGAACAACAAAAAATCGCTATTTTCTTGAACAGTAAAATACTCTTGGAAACAAGTATTTATATATTCTGTCCGCGAACGATTTCTGCCTGGTGACCGCTGGACTAGTTT</canonical>
            <polymorphic>TGTTCTGGGAAAAAGTACAAAACTAAACATTTCAACTAGCATATTTCATGAGACCTGTACACATTCATTGATTTTCTGTAAATAAATATGTTCTAATTTTCTGATTTTCAACAAAACACACTGCATGAAGTAAACTATTGGACATCCTGGTCTCCTCTTCGTTTTCAGAGAATTTAGTAAATCTGAAACTCGAGGAAATATTCTAACAATATTCTTTCAGGACAATACATTTGATGGTACGGAAAGCGAAATTTCAAACATAGGTGGAACTTCTCCATCCTATCCAGTTGCATATAAGAATCGGCCACCGAAACCAAAAAGAATGGAGATTCTGGAAGAAGTTCAAGTCGAGGAGTATACTCCGGAACCTTCTCCAGCGCCAAGAAGAATATTCAAGTCTGCAGTTCATCAGTCAGATGCAAGCCTGTCGGCTAAGGGAAATTCGTTGTCAAGATATGAGGAATCTGCTTTTTGATAGTCACTTTTCGTTCTTGCAAACWTTTTTTGTTTTTCTTTATTTTTAAAAGATTACTGTAATTTTAATATATTTTTATGTCTCTCGTGTTCGTAAATGAAAGAATGCTCACACATTTTTGCAGGTCAAAATATTAGTGAAATATATTAAAATTGATTTCAAAACATAGCTTTATGCAAATATTTGGCTCAAAAAACTTCTGAACTCGATTTTATTTGCGGAATGTGCTGATCGCTGTGGGAGATTTTACTTTTTGCTAGTTGCGCCTTTAAAGTGAGCTACGGTTATTGATCGGTGCGGCGTTCATATTTCGCGTTTTTGAACGTTTTTGAATAATTTTCCTGAATTAAAGAGAAAGAGAAAAGCAGCAATCATTTTTTTTCGGTTTTTTTTCATTCTTTTGAGAATTTTTCTTGTGAACAACAAAAAATCGCTATTTTCTTGAACAGTAAAATACTCTTGGAAACAAGTATTTATATATTCTGTCCGCGAACGATTTCTGCCTGGTGACCGCTGGACTAGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GAGATTCTGGAAGAAGTTCAAGT</pcr_primer_p1>
		<pcr_primer_p2>ATTTACGAACACGAGAGACATAA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>GAGATTCTGGAAGAAGTTCAAGTCGAGGAGTATACTCCGGAACCTTCTCCAGCGCCAAGAAGAATATTCAAGTCTGCAGTTCATCAGTCAGATGCAAGCCTGTCGGCTAAGGGAAATTCGTTGTCAAGATATGAGGAATCTGCTTTTTGATAGTCACTTTTCGTTCTTGCAAACTTTTTTTGTTTTTCTTTATTTTTAAAAGATTACTGTAATTTTAATATATTTTTATGTCTCTCGTGTTCGTAAAT</canonical_amplicon>
		<polymorphic_amplicon>GAGATTCTGGAAGAAGTTCAAGTCGAGGAGTATACTCCGGAACCTTCTCCAGCGCCAAGAAGAATATTCAAGTCTGCAGTTCATCAGTCAGATGCAAGCCTGTCGGCTAAGGGAAATTCGTTGTCAAGATATGAGGAATCTGCTTTTTGATAGTCACTTTTCGTTCTTGCAAACWTTTTTTGTTTTTCTTTATTTTTAAAAGATTACTGTAATTTTAATATATTTTTATGTCTCTCGTGTTCGTAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39591</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>190426</contig_pos>
        <strand></strand>
        <context>tttctttttc[C/T]tcctcacttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCAGCAGCAAAAATCGAAATCCAGCTGTTGCTACCAAGTTTTCTTTTTC</left_flank>
        <right_flank>TCCTCACTTTTTTTCCTCGTCTTCTTCTTCTTCGTGCCTCCTTATCTTCT</right_flank>
        <qual_score>33</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCACCAGGAAAGCCAGGACCAATCGGACCTCCAGGACCGAAAGGAAACCCAGGACCAGACGGACAATCCTACCAAGGACCACCAGGACCACCTGGAGATTCCGGAACTCCAGGACACGAGGGTCGTCCAGGACCAAACGGACCAGCTGGACCACCAGGAGACAACGGAGAGAAGGGAGACTGCGGACATTGCCCACGTAAGATATACCATTTTTTGGTTTCCGAAATCACAACCTATTATTTTCAGCACCACGTACCCCACCAGGCTATTAATCGCCATCCAAGTCATGATCAATTTCGCCCGTTTCGGGTGTCTTTTTTTCGTATCAAAAATAAACTTTTTCGCAATAATGTCTTCTCTTGGTTTCTTATTGTCTTTTTGTGTCTAAAAAGCTGGACGACACATTTCGGATAAAGGAATGTGCGCGTATCCGGGCAAAGCAAGAAGCAGCAGCAGCAAAAATCGAAATCCAGCTGTTGCTACCAAGTTTTCTTTTTCCTCCTCACTTTTTTTCCTCGTCTTCTTCTTCTTCGTGCCTCCTTATCTTCTCATCGAACACGGATAATCAGTTTTGGAATAAGGCGCCGCGGCGCAAGTCGTTAAAGGAGGAAGTTGGGAAGAAGATATGGGGAAAAAGAAGAGACAAAAAACTCGACAACGGGAAAGAAGAGACAATGGAACGTAAATGAGTATCTTGATGTAGTCCGGGAACCACCGCAAATGAGGTGCGGACGACAATGATAAAAGAATGCAGAAGAACGGAAGAAGAAGGAGAAGCTGAAGCAAATGGATTGGGGAAGAAATACTACAGTAGGAACCTTCAATTTATATAAAGATAAAGAGAAAGAAACGAGGGGGGGGGGGAGATGGGATAGCATTACATATGTAATGTAGGGAATAAAGCTGATTTCATTGCCGCAGATCCTACGAGAGAAGTTCTGGAAAGAAAGATTTTTGATTTTTCAAATGCTAAAATAAATATATCGAAAAGTTTAAACT</canonical>
            <polymorphic>ACCACCAGGAAAGCCAGGACCAATCGGACCTCCAGGACCGAAAGGAAACCCAGGACCAGACGGACAATCCTACCAAGGACCACCAGGACCACCTGGAGATTCCGGAACTCCAGGACACGAGGGTCGTCCAGGACCAAACGGACCAGCTGGACCACCAGGAGACAACGGAGAGAAGGGAGACTGCGGACATTGCCCACGTAAGATATACCATTTTTTGGTTTCCGAAATCACAACCTATTATTTTCAGCACCACGTACCCCACCAGGCTATTAATCGCCATCCAAGTCATGATCAATTTCGCCCGTTTCGGGTGTCTTTTTTTCGTATCAAAAATAAACTTTTTCGCAATAATGTCTTCTCTTGGTTTCTTATTGTCTTTTTGTGTCTAAAAAGCTGGACGACACATTTCGGATAAAGGAATGTGCGCGTATCCGGGCAAAGCAAGAAGCAGCAGCAGCAAAAATCGAAATCCAGCTGTTGCTACCAAGTTTTCTTTTTCYTCCTCACTTTTTTTCCTCGTCTTCTTCTTCTTCGTGCCTCCTTATCTTCTCATCGAACACGGATAATCAGTTTTGGAATAAGGCGCCGCGGCGCAAGTCGTTAAAGGAGGAAGTTGGGAAGAAGATATGGGGAAAAAGAAGAGACAAAAAACTCGACAACGGGAAAGAAGAGACAATGGAACGTAAATGAGTATCTTGATGTAGTCCGGGAACCACCGCAAATGAGGTGCGGACGACAATGATAAAAGAATGCAGAAGAACGGAAGAAGAAGGAGAAGCTGAAGCAAATGGATTGGGGAAGAAATACTACAGTAGGAACCTTCAATTTATATAAAGATAAAGAGAAAGAAACGAGGGGGGGGGGGAGATGGGATAGCATTACATATGTAATGTAGGGAATAAAGCTGATTTCATTGCCGCAGATCCTACGAGAGAAGTTCTGGAAAGAAAGATTTTTGATTTTTCAAATGCTAAAATAAATATATCGAAAAGTTTAAACT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACTTTTTCGCAATAATGTCTTC</pcr_primer_p1>
		<pcr_primer_p2>CCTTATTCCAAAACTGATTATCC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ACTTTTTCGCAATAATGTCTTCTCTTGGTTTCTTATTGTCTTTTTGTGTCTAAAAAGCTGGACGACACATTTCGGATAAAGGAATGTGCGCGTATCCGGGCAAAGCAAGAAGCAGCAGCAGCAAAAATCGAAATCCAGCTGTTGCTACCAAGTTTTCTTTTTCCTCCTCACTTTTTTTCCTCGTCTTCTTCTTCTTCGTGCCTCCTTATCTTCTCATCGAACACGGATAATCAGTTTTGGAATAAGG</canonical_amplicon>
		<polymorphic_amplicon>ACTTTTTCGCAATAATGTCTTCTCTTGGTTTCTTATTGTCTTTTTGTGTCTAAAAAGCTGGACGACACATTTCGGATAAAGGAATGTGCGCGTATCCGGGCAAAGCAAGAAGCAGCAGCAGCAAAAATCGAAATCCAGCTGTTGCTACCAAGTTTTCTTTTTCYTCCTCACTTTTTTTCCTCGTCTTCTTCTTCTTCGTGCCTCCTTATCTTCTCATCGAACACGGATAATCAGTTTTGGAATAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39592</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>266346</contig_pos>
        <strand>+</strand>
        <context>gtaattatgc[A/T]ccACCCTGTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACGCTTCACCCAAATTTTAGGCTAGTGTAAACTTGTCCGGGTAATTATGC</left_flank>
        <right_flank>CCACCCTGTATGACACCAATATTTTACTCAAGCTTTTGAATTCACGAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGAGAAATATTTCTCATTTTTTGTGTTAGATATCAAAAAGTGATCAACTAAAGAAATTTTTATCATATTATCAGTGATATTTTATCAGTTAACAAATTTTTGATATCTTGCACAGGGAACGATATAATTGAGCTCAAAGTTGATGGCTGTATGGCATTGTGTGGGAGTGTTACGGTTTCTTGCTCTTACAGAATGATAAAAGCGGGTATATCCTTAGACATAGGTATCTTGGAGAGCTGAAAATTGGTAAAAATATAATTTTACATTTGATTCAAAGCTACTGAAAATTTCAAAGCAATACCTCAAGTCGAGGCATTGTTATAATTGTTCATAGATCAACGACGTAATTTATTGCGATTTTTATCAAAGTTGGTCAAATAGTTTGAAACTTGGTCAGTTTACTGATAAATTTGTTGAATTTCCCCACTCCAAATTTGGACCCAGTACAACGCTTCACCCAAATTTTAGGCTAGTGTAAACTTGTCCGGGTAATTATGCACCACCCTGTATGACACCAATATTTTACTCAAGCTTTTGAATTCACGAAATTCTCAAAATACAATGGAGAAAGATAATAAGATTTTTCATAGTTTATGAGAATGCCCACAGTCAAAATTAATTCAGGATGTTCTCAAATGTCCGTATTGGATTAGAAAATGAAAAGCGTAGGTGTGAAGATGAAAAGAGAAGGTAACCGAACGACGAATATTGGGACTTGTAAAATGCAAACATATTGGGTGGCCGGTGTTTGAATTGTGTAAACATACAAATATCGGTAGATATGAGGAGAAACGGCAGTGTGCGCGGGAATGCATTTCCTAGTGGATGTTGTCCGAAAAATGAGAAATAGAGGATCGAAATAGAAGCGGCGAAAAAGGAATGAGGAATGAATCTATAAAAAGTGCAGTCAACAGCTCGTTGTGGTGGTTTTGAGACGAGAAACATAATGGCTCATGGATACGAAATGCGCGAAGAGCAGGAAATTGGTGGGTGCTCTCT</canonical>
            <polymorphic>ATGAGAAATATTTCTCATTTTTTGTGTTAGATATCAAAAAGTGATCAACTAAAGAAATTTTTATCATATTATCAGTGATATTTTATCAGTTAACAAATTTTTGATATCTTGCACAGGGAACGATATAATTGAGCTCAAAGTTGATGGCTGTATGGCATTGTGTGGGAGTGTTACGGTTTCTTGCTCTTACAGAATGATAAAAGCGGGTATATCCTTAGACATAGGTATCTTGGAGAGCTGAAAATTGGTAAAAATATAATTTTACATTTGATTCAAAGCTACTGAAAATTTCAAAGCAATACCTCAAGTCGAGGCATTGTTATAATTGTTCATAGATCAACGACGTAATTTATTGCGATTTTTATCAAAGTTGGTCAAATAGTTTGAAACTTGGTCAGTTTACTGATAAATTTGTTGAATTTCCCCACTCCAAATTTGGACCCAGTACAACGCTTCACCCAAATTTTAGGCTAGTGTAAACTTGTCCGGGTAATTATGCWCCACCCTGTATGACACCAATATTTTACTCAAGCTTTTGAATTCACGAAATTCTCAAAATACAATGGAGAAAGATAATAAGATTTTTCATAGTTTATGAGAATGCCCACAGTCAAAATTAATTCAGGATGTTCTCAAATGTCCGTATTGGATTAGAAAATGAAAAGCGTAGGTGTGAAGATGAAAAGAGAAGGTAACCGAACGACGAATATTGGGACTTGTAAAATGCAAACATATTGGGTGGCCGGTGTTTGAATTGTGTAAACATACAAATATCGGTAGATATGAGGAGAAACGGCAGTGTGCGCGGGAATGCATTTCCTAGTGGATGTTGTCCGAAAAATGAGAAATAGAGGATCGAAATAGAAGCGGCGAAAAAGGAATGAGGAATGAATCTATAAAAAGTGCAGTCAACAGCTCGTTGTGGTGGTTTTGAGACGAGAAACATAATGGCTCATGGATACGAAATGCGCGAAGAGCAGGAAATTGGTGGGTGCTCTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>387 228 111 95 92 87</canonical_bands>
                <polymorphic_bands>615 111 95 92 87</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>257 80 66 66 63 63 49 42 36 34 30 29 26 24 22 19 19 17 12 11 7 6 6 4 3 3 2 2 2</canonical_bands>
                <polymorphic_bands>257 80 66 66 63 63 49 42 36 34 30 29 27 26 22 19 19 17 12 11 7 6 6 4 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTACGGTTTCTTGCTCTTA</pcr_primer_p1>
		<pcr_primer_p2>TGTATTTTGAGAATTTCGTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>394</pcr_amplicon_size>
		<canonical_amplicon>TGTTACGGTTTCTTGCTCTTACAGAATGATAAAAGCGGGTATATCCTTAGACATAGGTATCTTGGAGAGCTGAAAATTGGTAAAAATATAATTTTACATTTGATTCAAAGCTACTGAAAATTTCAAAGCAATACCTCAAGTCGAGGCATTGTTATAATTGTTCATAGATCAACGACGTAATTTATTGCGATTTTTATCAAAGTTGGTCAAATAGTTTGAAACTTGGTCAGTTTACTGATAAATTTGTTGAATTTCCCCACTCCAAATTTGGACCCAGTACAACGCTTCACCCAAATTTTAGGCTAGTGTAAACTTGTCCGGGTAATTATGCACCACCCTGTATGACACCAATATTTTACTCAAGCTTTTGAATTCACGAAATTCTCAAAATACA</canonical_amplicon>
		<polymorphic_amplicon>TGTTACGGTTTCTTGCTCTTACAGAATGATAAAAGCGGGTATATCCTTAGACATAGGTATCTTGGAGAGCTGAAAATTGGTAAAAATATAATTTTACATTTGATTCAAAGCTACTGAAAATTTCAAAGCAATACCTCAAGTCGAGGCATTGTTATAATTGTTCATAGATCAACGACGTAATTTATTGCGATTTTTATCAAAGTTGGTCAAATAGTTTGAAACTTGGTCAGTTTACTGATAAATTTGTTGAATTTCCCCACTCCAAATTTGGACCCAGTACAACGCTTCACCCAAATTTTAGGCTAGTGTAAACTTGTCCGGGTAATTATGCWCCACCCTGTATGACACCAATATTTTACTCAAGCTTTTGAATTCACGAAATTCTCAAAATACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39593</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>270519</contig_pos>
        <strand>+</strand>
        <context>AGTGGTATAT[A/G]TGGAAAAACG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAGCTGATTGGTGTGTGTGTGTCATTTATTAGCATAATCAAGTGGTATAT</left_flank>
        <right_flank>TGGAAAAACGAAAATGGGAGACAAAAACAGAATCGGCTTAAAAATACACT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTAATTTAATGACTTGGAAAACGACAGGAAGAGAATGAAAGAGATATATTGGTCAGCAGCAGGTGAAATGACCGTTAGAGAGCATGAGATGTAGAACACCACATGTTCTCCCTTTCTTTTCAAATATTTGACCACGTTCCTAACACGGGCGGTCTTTTATGTTTCTGGCTTCCGCTCTCGACAATTAGCCTACCCGGACGTTCATTGATTTTATGGTTGATCGAATGGAAATGAATTTCTCATTCCTCCCCGCCACATCTAAATGTCACATAAGCTCGAGCCGGCGGCATAACCGCCTGGAAAACATATGGCTTATTACGCGCGGGATGGTGTGCGCGAAAATAAATGAGAAAAGTCAAATGAAAGCAGCCAGTAGTCTCACCTGATTTATGGCTCTTTTAATCGCTTAGATATGGACAAAAAGTCACAAAACGAGAGTGAAGAGAGCTAGCTGATTGGTGTGTGTGTGTCATTTATTAGCATAATCAAGTGGTATATGTGGAAAAACGAAAATGGGAGACAAAAACAGAATCGGCTTAAAAATACACTGAAATGGAATTGAAAAAAGGAGATGATACGATTTTCCATGTTTTATGGATGGATCGTAAAACGAGTATGACTTGGAAAAAAAAAGTTATCAGTTTTTTTTGAACATTTGTGTATACGAACTTATCAGTACTGTAGGTTTGATAAAGGAAAAAATTAAATGGTTTTTTGGTTGAGAATTTGAAGTACCATGAAACCTGTATTCGAAGGTGCCCTAATTGAGCCAATTTTTCTCGGTTCCTGACAAAAAGAAAAAACTTTGTCTACTGATAATTTGTTTATCATAATAACAGTCAGTAGACACACTTTTGATATAGAAATTGAGATAATTGAGCTCAAACTCGAGGCCCTTCTATTACAGGTTTTACGGCAGCCAAAATTCTAATTGCAGACTAATTTGAAGTTTTCTGAGCAGAGAAAAATTCTCTGAGCAATTCTCTGAGCAGAGAAAAA</canonical>
            <polymorphic>GGTAATTTAATGACTTGGAAAACGACAGGAAGAGAATGAAAGAGATATATTGGTCAGCAGCAGGTGAAATGACCGTTAGAGAGCATGAGATGTAGAACACCACATGTTCTCCCTTTCTTTTCAAATATTTGACCACGTTCCTAACACGGGCGGTCTTTTATGTTTCTGGCTTCCGCTCTCGACAATTAGCCTACCCGGACGTTCATTGATTTTATGGTTGATCGAATGGAAATGAATTTCTCATTCCTCCCCGCCACATCTAAATGTCACATAAGCTCGAGCCGGCGGCATAACCGCCTGGAAAACATATGGCTTATTACGCGCGGGATGGTGTGCGCGAAAATAAATGAGAAAAGTCAAATGAAAGCAGCCAGTAGTCTCACCTGATTTATGGCTCTTTTAATCGCTTAGATATGGACAAAAAGTCACAAAACGAGAGTGAAGAGAGCTAGCTGATTGGTGTGTGTGTGTCATTTATTAGCATAATCAAGTGGTATATRTGGAAAAACGAAAATGGGAGACAAAAACAGAATCGGCTTAAAAATACACTGAAATGGAATTGAAAAAAGGAGATGATACGATTTTCCATGTTTTATGGATGGATCGTAAAACGAGTATGACTTGGAAAAAAAAAGTTATCAGTTTTTTTTGAACATTTGTGTATACGAACTTATCAGTACTGTAGGTTTGATAAAGGAAAAAATTAAATGGTTTTTTGGTTGAGAATTTGAAGTACCATGAAACCTGTATTCGAAGGTGCCCTAATTGAGCCAATTTTTCTCGGTTCCTGACAAAAAGAAAAAACTTTGTCTACTGATAATTTGTTTATCATAATAACAGTCAGTAGACACACTTTTGATATAGAAATTGAGATAATTGAGCTCAAACTCGAGGCCCTTCTATTACAGGTTTTACGGCAGCCAAAATTCTAATTGCAGACTAATTTGAAGTTTTCTGAGCAGAGAAAAATTCTCTGAGCAATTCTCTGAGCAGAGAAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>148 113 110 98 91 66 64 47 46 46 33 33 23 21 13 13 11 9 3 2 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>148 113 110 98 91 66 64 55 47 46 33 33 23 21 13 13 11 3 2 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACCTGATTTATGGCTCTTTTAAT</pcr_primer_p1>
		<pcr_primer_p2>TTTTCCAAGTCATACTCGTTTTA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>ACCTGATTTATGGCTCTTTTAATCGCTTAGATATGGACAAAAAGTCACAAAACGAGAGTGAAGAGAGCTAGCTGATTGGTGTGTGTGTGTCATTTATTAGCATAATCAAGTGGTATATGTGGAAAAACGAAAATGGGAGACAAAAACAGAATCGGCTTAAAAATACACTGAAATGGAATTGAAAAAAGGAGATGATACGATTTTCCATGTTTTATGGATGGATCGTAAAACGAGTATGACTTGGAAAA</canonical_amplicon>
		<polymorphic_amplicon>ACCTGATTTATGGCTCTTTTAATCGCTTAGATATGGACAAAAAGTCACAAAACGAGAGTGAAGAGAGCTAGCTGATTGGTGTGTGTGTGTCATTTATTAGCATAATCAAGTGGTATATRTGGAAAAACGAAAATGGGAGACAAAAACAGAATCGGCTTAAAAATACACTGAAATGGAATTGAAAAAAGGAGATGATACGATTTTCCATGTTTTATGGATGGATCGTAAAACGAGTATGACTTGGAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39594</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>270662</contig_pos>
        <strand>+</strand>
        <context>AAGTTATCAG[A/G]TTTTTTTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTATGGATGGATCGTAAAACGAGTATGACTTGGAAAAAAAAAGTTATCAG</left_flank>
        <right_flank>TTTTTTTGAACATTTGTGTATACGAACTTATCAGTACTGTAGGTTTGATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACACGGGCGGTCTTTTATGTTTCTGGCTTCCGCTCTCGACAATTAGCCTACCCGGACGTTCATTGATTTTATGGTTGATCGAATGGAAATGAATTTCTCATTCCTCCCCGCCACATCTAAATGTCACATAAGCTCGAGCCGGCGGCATAACCGCCTGGAAAACATATGGCTTATTACGCGCGGGATGGTGTGCGCGAAAATAAATGAGAAAAGTCAAATGAAAGCAGCCAGTAGTCTCACCTGATTTATGGCTCTTTTAATCGCTTAGATATGGACAAAAAGTCACAAAACGAGAGTGAAGAGAGCTAGCTGATTGGTGTGTGTGTGTCATTTATTAGCATAATCAAGTGGTATATGTGGAAAAACGAAAATGGGAGACAAAAACAGAATCGGCTTAAAAATACACTGAAATGGAATTGAAAAAAGGAGATGATACGATTTTCCATGTTTTATGGATGGATCGTAAAACGAGTATGACTTGGAAAAAAAAAGTTATCAGTTTTTTTTGAACATTTGTGTATACGAACTTATCAGTACTGTAGGTTTGATAAAGGAAAAAATTAAATGGTTTTTTGGTTGAGAATTTGAAGTACCATGAAACCTGTATTCGAAGGTGCCCTAATTGAGCCAATTTTTCTCGGTTCCTGACAAAAAGAAAAAACTTTGTCTACTGATAATTTGTTTATCATAATAACAGTCAGTAGACACACTTTTGATATAGAAATTGAGATAATTGAGCTCAAACTCGAGGCCCTTCTATTACAGGTTTTACGGCAGCCAAAATTCTAATTGCAGACTAATTTGAAGTTTTCTGAGCAGAGAAAAATTCTCTGAGCAATTCTCTGAGCAGAGAAAAATTAAAAAAAAACCGATCTGAGAATGCTCTTGAAGATCTTCAACAAGAAAATCTAATTTTTTTTTTCAATTTTTAAAAAATTGGAAAAATGACCCGAAAATTTGAAATTCGAAAACTATAAAAATTGAAAAATCATCCCAAAAT</canonical>
            <polymorphic>ACACGGGCGGTCTTTTATGTTTCTGGCTTCCGCTCTCGACAATTAGCCTACCCGGACGTTCATTGATTTTATGGTTGATCGAATGGAAATGAATTTCTCATTCCTCCCCGCCACATCTAAATGTCACATAAGCTCGAGCCGGCGGCATAACCGCCTGGAAAACATATGGCTTATTACGCGCGGGATGGTGTGCGCGAAAATAAATGAGAAAAGTCAAATGAAAGCAGCCAGTAGTCTCACCTGATTTATGGCTCTTTTAATCGCTTAGATATGGACAAAAAGTCACAAAACGAGAGTGAAGAGAGCTAGCTGATTGGTGTGTGTGTGTCATTTATTAGCATAATCAAGTGGTATATGTGGAAAAACGAAAATGGGAGACAAAAACAGAATCGGCTTAAAAATACACTGAAATGGAATTGAAAAAAGGAGATGATACGATTTTCCATGTTTTATGGATGGATCGTAAAACGAGTATGACTTGGAAAAAAAAAGTTATCAGRTTTTTTTGAACATTTGTGTATACGAACTTATCAGTACTGTAGGTTTGATAAAGGAAAAAATTAAATGGTTTTTTGGTTGAGAATTTGAAGTACCATGAAACCTGTATTCGAAGGTGCCCTAATTGAGCCAATTTTTCTCGGTTCCTGACAAAAAGAAAAAACTTTGTCTACTGATAATTTGTTTATCATAATAACAGTCAGTAGACACACTTTTGATATAGAAATTGAGATAATTGAGCTCAAACTCGAGGCCCTTCTATTACAGGTTTTACGGCAGCCAAAATTCTAATTGCAGACTAATTTGAAGTTTTCTGAGCAGAGAAAAATTCTCTGAGCAATTCTCTGAGCAGAGAAAAATTAAAAAAAAACCGATCTGAGAATGCTCTTGAAGATCTTCAACAAGAAAATCTAATTTTTTTTTTCAATTTTTAAAAAATTGGAAAAATGACCCGAAAATTTGAAATTCGAAAACTATAAAAATTGAAAAATCATCCCAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTGTGTGTGTGTCATTTATTAG</pcr_primer_p1>
		<pcr_primer_p2>TTTTTCCTTTATCAAACCTACAG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GGTGTGTGTGTGTCATTTATTAGCATAATCAAGTGGTATATGTGGAAAAACGAAAATGGGAGACAAAAACAGAATCGGCTTAAAAATACACTGAAATGGAATTGAAAAAAGGAGATGATACGATTTTCCATGTTTTATGGATGGATCGTAAAACGAGTATGACTTGGAAAAAAAAAGTTATCAGTTTTTTTTGAACATTTGTGTATACGAACTTATCAGTACTGTAGGTTTGATAAAGGAAAAA</canonical_amplicon>
		<polymorphic_amplicon>GGTGTGTGTGTGTCATTTATTAGCATAATCAAGTGGTATATGTGGAAAAACGAAAATGGGAGACAAAAACAGAATCGGCTTAAAAATACACTGAAATGGAATTGAAAAAAGGAGATGATACGATTTTCCATGTTTTATGGATGGATCGTAAAACGAGTATGACTTGGAAAAAAAAAGTTATCAGRTTTTTTTGAACATTTGTGTATACGAACTTATCAGTACTGTAGGTTTGATAAAGGAAAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39595</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>272887</contig_pos>
        <strand></strand>
        <context>ataattattt[T/A]aaaaaaataa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCTGGACCGTTATTTTCTTTAGGGACCGCCGAACTCAAATATAATTATTT</left_flank>
        <right_flank>AAAAAAATAATTTCCGGAGATTTCAAAATTTCACAGATACTAGTTGAAAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGTGACCGGAAACTTGATGGCCGAGCTACAGACTTCTGAAAATGGTAAAAATGGCTGAAAATAAACGGAAAAATAAGTTTTTGTATATCTTATTCAAACTTTGAAAAAAATGCTTAAAAGATCTTTGACACTTTGAAGGTTCGAGAAATCAAGAAAACTTGAGAAATTGAGGAAGTCAAAACACGGAGATTCATTTTCGAAATTTCAGCGATTCTAAAGCTCTAAAAGCTCCAGAAATGCTGAATTTCTGATGTTTTGAATTTACTCAGGGAATTTTGGGCAGAAGTTGGGCGTTAATTTTGTGAGTTATCCCATTATCGAAGTCTTACTGAGTATCCCACGAGCGTTGATAAAACTAACAGAACAACATAAAAAATTAGATTGGTAATCGGAAATTCGATAAAAACAGGATTCATTTTTTCTAGAAATCCAAAACGCAAACTTCGCTCTGGACCGTTATTTTCTTTAGGGACCGCCGAACTCAAATATAATTATTTTAAAAAAATAATTTCCGGAGATTTCAAAATTTCACAGATACTAGTTGAAACACTCTTGTTCCATTTATTGAAACGAAACATTTTGGAAAAATAGAAGCGTCCTTCTACTTGAAGAGCACCTGTAATAGAAGGGCTCTCCGGCGGAAGCCTGGAACAATAGAAGGGCCGGCCCTTTTAATACAGGTTTTGAGGCATTTTTTTGCCCTGAGCAGATTTCGATTTCAGGTCTTTTATCCAATCTTTGATAGTGTTTAAGCAACCAACCCCATAAATTTAAATTATTTATTTCTTATTATTTTTTAGAAAATTACCACATTCAACGGAATCCATAGAGCTGTATAGAAATCTGAATTAAAGCGAGAAAGATGCAATGTGTACATACATATAGAAGCTGGAAGTTTGAACATTTAAAGAGAGGGGGAAAAAACTAGAGACAAAATAAATGAGAGGGGGAGGATGGGAAATCTACGAAAATCTAGTTATCAAAACACGGGGAGCAGA</canonical>
            <polymorphic>AAAGTGACCGGAAACTTGATGGCCGAGCTACAGACTTCTGAAAATGGTAAAAATGGCTGAAAATAAACGGAAAAATAAGTTTTTGTATATCTTATTCAAACTTTGAAAAAAATGCTTAAAAGATCTTTGACACTTTGAAGGTTCGAGAAATCAAGAAAACTTGAGAAATTGAGGAAGTCAAAACACGGAGATTCATTTTCGAAATTTCAGCGATTCTAAAGCTCTAAAAGCTCCAGAAATGCTGAATTTCTGATGTTTTGAATTTACTCAGGGAATTTTGGGCAGAAGTTGGGCGTTAATTTTGTGAGTTATCCCATTATCGAAGTCTTACTGAGTATCCCACGAGCGTTGATAAAACTAACAGAACAACATAAAAAATTAGATTGGTAATCGGAAATTCGATAAAAACAGGATTCATTTTTTCTAGAAATCCAAAACGCAAACTTCGCTCTGGACCGTTATTTTCTTTAGGGACCGCCGAACTCAAATATAATTATTTWAAAAAAATAATTTCCGGAGATTTCAAAATTTCACAGATACTAGTTGAAACACTCTTGTTCCATTTATTGAAACGAAACATTTTGGAAAAATAGAAGCGTCCTTCTACTTGAAGAGCACCTGTAATAGAAGGGCTCTCCGGCGGAAGCCTGGAACAATAGAAGGGCCGGCCCTTTTAATACAGGTTTTGAGGCATTTTTTTGCCCTGAGCAGATTTCGATTTCAGGTCTTTTATCCAATCTTTGATAGTGTTTAAGCAACCAACCCCATAAATTTAAATTATTTATTTCTTATTATTTTTTAGAAAATTACCACATTCAACGGAATCCATAGAGCTGTATAGAAATCTGAATTAAAGCGAGAAAGATGCAATGTGTACATACATATAGAAGCTGGAAGTTTGAACATTTAAAGAGAGGGGGAAAAAACTAGAGACAAAATAAATGAGAGGGGGAGGATGGGAAATCTACGAAAATCTAGTTATCAAAACACGGGGAGCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>500 274 134 92</canonical_bands>
                <polymorphic_bands>774 134 92</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>203 180 175 116 93 78 77 56 22</canonical_bands>
                <polymorphic_bands>378 180 116 93 78 77 56 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCCATTATCGAAGTCTTACTGA</pcr_primer_p1>
		<pcr_primer_p2>ATGGAACAAGAGTGTTTCAACTA</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>CCCATTATCGAAGTCTTACTGAGTATCCCACGAGCGTTGATAAAACTAACAGAACAACATAAAAAATTAGATTGGTAATCGGAAATTCGATAAAAACAGGATTCATTTTTTCTAGAAATCCAAAACGCAAACTTCGCTCTGGACCGTTATTTTCTTTAGGGACCGCCGAACTCAAATATAATTATTTTAAAAAAATAATTTCCGGAGATTTCAAAATTTCACAGATACTAGTTGAAACACTCTTGTTCCAT</canonical_amplicon>
		<polymorphic_amplicon>CCCATTATCGAAGTCTTACTGAGTATCCCACGAGCGTTGATAAAACTAACAGAACAACATAAAAAATTAGATTGGTAATCGGAAATTCGATAAAAACAGGATTCATTTTTTCTAGAAATCCAAAACGCAAACTTCGCTCTGGACCGTTATTTTCTTTAGGGACCGCCGAACTCAAATATAATTATTTWAAAAAAATAATTTCCGGAGATTTCAAAATTTCACAGATACTAGTTGAAACACTCTTGTTCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39596</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>273061</contig_pos>
        <strand>+</strand>
        <context>GCCGGCCCTT[C/T]TAATACAGGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAGAAGGGCTCTCCGGCGGAAGCCTGGAACAATAGAAGGGCCGGCCCTT</left_flank>
        <right_flank>TAATACAGGTTTTGAGGCATTTTTTTGCCCTGAGCAGATTTCGATTTCAG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGTCAAAACACGGAGATTCATTTTCGAAATTTCAGCGATTCTAAAGCTCTAAAAGCTCCAGAAATGCTGAATTTCTGATGTTTTGAATTTACTCAGGGAATTTTGGGCAGAAGTTGGGCGTTAATTTTGTGAGTTATCCCATTATCGAAGTCTTACTGAGTATCCCACGAGCGTTGATAAAACTAACAGAACAACATAAAAAATTAGATTGGTAATCGGAAATTCGATAAAAACAGGATTCATTTTTTCTAGAAATCCAAAACGCAAACTTCGCTCTGGACCGTTATTTTCTTTAGGGACCGCCGAACTCAAATATAATTATTTTAAAAAAATAATTTCCGGAGATTTCAAAATTTCACAGATACTAGTTGAAACACTCTTGTTCCATTTATTGAAACGAAACATTTTGGAAAAATAGAAGCGTCCTTCTACTTGAAGAGCACCTGTAATAGAAGGGCTCTCCGGCGGAAGCCTGGAACAATAGAAGGGCCGGCCCTTTTAATACAGGTTTTGAGGCATTTTTTTGCCCTGAGCAGATTTCGATTTCAGGTCTTTTATCCAATCTTTGATAGTGTTTAAGCAACCAACCCCATAAATTTAAATTATTTATTTCTTATTATTTTTTAGAAAATTACCACATTCAACGGAATCCATAGAGCTGTATAGAAATCTGAATTAAAGCGAGAAAGATGCAATGTGTACATACATATAGAAGCTGGAAGTTTGAACATTTAAAGAGAGGGGGAAAAAACTAGAGACAAAATAAATGAGAGGGGGAGGATGGGAAATCTACGAAAATCTAGTTATCAAAACACGGGGAGCAGAAAAAAGGGTAAGGGAGAGAGAGGAAACTGGGATAAAAGAGCACCGGAAAGTGCCCAATTCTAGAATTTAGAAAGGAAAAAAAATAGAAACCCGAAAGAAAGACAAAAGCAAAAAAAGAAAGAAAAATGAGGAAAAATAGGGGAGAAGAAACGCAGGTAGAAGTGTATCAGAGTC</canonical>
            <polymorphic>AAGTCAAAACACGGAGATTCATTTTCGAAATTTCAGCGATTCTAAAGCTCTAAAAGCTCCAGAAATGCTGAATTTCTGATGTTTTGAATTTACTCAGGGAATTTTGGGCAGAAGTTGGGCGTTAATTTTGTGAGTTATCCCATTATCGAAGTCTTACTGAGTATCCCACGAGCGTTGATAAAACTAACAGAACAACATAAAAAATTAGATTGGTAATCGGAAATTCGATAAAAACAGGATTCATTTTTTCTAGAAATCCAAAACGCAAACTTCGCTCTGGACCGTTATTTTCTTTAGGGACCGCCGAACTCAAATATAATTATTTTAAAAAAATAATTTCCGGAGATTTCAAAATTTCACAGATACTAGTTGAAACACTCTTGTTCCATTTATTGAAACGAAACATTTTGGAAAAATAGAAGCGTCCTTCTACTTGAAGAGCACCTGTAATAGAAGGGCTCTCCGGCGGAAGCCTGGAACAATAGAAGGGCCGGCCCTTYTAATACAGGTTTTGAGGCATTTTTTTGCCCTGAGCAGATTTCGATTTCAGGTCTTTTATCCAATCTTTGATAGTGTTTAAGCAACCAACCCCATAAATTTAAATTATTTATTTCTTATTATTTTTTAGAAAATTACCACATTCAACGGAATCCATAGAGCTGTATAGAAATCTGAATTAAAGCGAGAAAGATGCAATGTGTACATACATATAGAAGCTGGAAGTTTGAACATTTAAAGAGAGGGGGAAAAAACTAGAGACAAAATAAATGAGAGGGGGAGGATGGGAAATCTACGAAAATCTAGTTATCAAAACACGGGGAGCAGAAAAAAGGGTAAGGGAGAGAGAGGAAACTGGGATAAAAGAGCACCGGAAAGTGCCCAATTCTAGAATTTAGAAAGGAAAAAAAATAGAAACCCGAAAGAAAGACAAAAGCAAAAAAAGAAAGAAAAATGAGGAAAAATAGGGGAGAAGAAACGCAGGTAGAAGTGTATCAGAGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>267 203 175 122 78 77 56 22</canonical_bands>
                <polymorphic_bands>267 252 203 122 78 56 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAGATTTCAAAATTTCACAGA</pcr_primer_p1>
		<pcr_primer_p2>GGTTGCTTAAACACTATCAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>GGAGATTTCAAAATTTCACAGATACTAGTTGAAACACTCTTGTTCCATTTATTGAAACGAAACATTTTGGAAAAATAGAAGCGTCCTTCTACTTGAAGAGCACCTGTAATAGAAGGGCTCTCCGGCGGAAGCCTGGAACAATAGAAGGGCCGGCCCTTTTAATACAGGTTTTGAGGCATTTTTTTGCCCTGAGCAGATTTCGATTTCAGGTCTTTTATCCAATCTTTGATAGTGTTTAAGCAACC</canonical_amplicon>
		<polymorphic_amplicon>GGAGATTTCAAAATTTCACAGATACTAGTTGAAACACTCTTGTTCCATTTATTGAAACGAAACATTTTGGAAAAATAGAAGCGTCCTTCTACTTGAAGAGCACCTGTAATAGAAGGGCTCTCCGGCGGAAGCCTGGAACAATAGAAGGGCCGGCCCTTYTAATACAGGTTTTGAGGCATTTTTTTGCCCTGAGCAGATTTCGATTTCAGGTCTTTTATCCAATCTTTGATAGTGTTTAAGCAACC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39597</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>298120</contig_pos>
        <strand>+</strand>
        <context>TATTATTACG[C/T]AAAAATYCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTTCCATTGCACCGAAATGTTTCCAATTGGTGTGCATTATATTATTACG</left_flank>
        <right_flank>AAAAATCCAAAAAAAAATCCTGGAAAACCGCCGTCGAAAATATAAAGAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAATTGCTTTTCGTGAAATAGATAAACACAATTATGGGTAAGCGGCTTTGAATTAATTGAAAAACAAACTGCTATGGTCAATCCAACGTTCAAGCTGTTTCAAAATGGCAAAATTCGAAAGTAGTTTCACTATCAGCAATAGAACCGCGGTCCTATTTGTCTAACATTAAAAAGGAATTCCTATAGCATTTATTTATTTTTTCAAAATTAAAGCTCCGCTAAACTCAAATTAAGTCTTAATTAACAATGACTGTAACTTCTAAAGTTTTCAATTTCCAAGACCGGTGTGAATTTGTTATGAATACTGTTTTTTTCCGTTTCGGTTAATTCCGATGAATCAAAAATTTTTTCTGGAGAAAAATATTTTTTCAACAAGTACAATTTCTGTTGATATTAGTTCGAATTATTTGCTGCCAGAAATCGCTGCTTGTGAGAACGTCCTTTTAAAATTTCCATTGCACCGAAATGTTTCCAATTGGTGTGCATTATATTATTACGAAAAAATCCAAAAAAAAATCCTGGAAAACCGCCGTCGAAAATATAAAGAGGGTTCCGAAGAGGGACGAGTTCCCTCGCAACGAGAAACCTAGGCCACGGCGGCGGGACGCTTTTTTAAATGTGTGGCTTTTTATGTTTTTCCGTGGCGGTGATAAAACCGGAAAAAATCCCGAAATTTTGCCTTGTAAAAAAGGCGTCCAGCGGCCGTGGCCTAGGTTTATTATTGCGCTGAAACGCAAATCCTCATCCCTATTCACCACCATTCTTTAAATTTTCAACCGAGTTTTTCGGGTATTTTGGATTATGAAAAATTTTGTAATAATATCAGGAAAATAGAAAACATTGAAAACATTTCGGTGTAATAAAAATTTCTGACCGGATTCCCCCTATAAGATAGATTTTGATTATTAAAATCGAGTTTCAGAGTTATTTTAATTAATATAAACGGTTAGTGTACAAAAAAGAACAATTATTTTTTTGACAGCGACTTTATTCAGAAGA</canonical>
            <polymorphic>CTAATTGCTTTTCGTGAAATAGATAAACACAATTATGGGTAAGCGGCTTTGAATTAATTGAAAAACAAACTGCTATGGTCAATCCAACGTTCAAGCTGTTTCAAAATGGCAAAATTCGAAAGTAGTTTCACTATCAGCAATAGAACCGCGGTCCTATTTGTCTAACATTAAAAAGGAATTCCTATAGCATTTATTTATTTTTTCAAAATTAAAGCTCCGCTAAACTCAAATTAAGTCTTAATTAACAATGACTGTAACTTCTAAAGTTTTCAATTTCCAAGACCGGTGTGAATTTGTTATGAATACTGTTTTTTTCCGTTTCGGTTAATTCCGATGAATCAAAAATTTTTTCTGGAGAAAAATATTTTTTCAACAAGTACAATTTCTGTTGATATTAGTTCGAATTATTTGCTGCCAGAAATCGCTGCTTGTGAGAACGTCCTTTTAAAATTTCCATTGCACCGAAATGTTTCCAATTGGTGTGCATTATATTATTACGYAAAAATCCAAAAAAAAATCCTGGAAAACCGCCGTCGAAAATATAAAGAGGGTTCCGAAGAGGGACGAGTTCCCTCGCAACGAGAAACCTAGGCCACGGCGGCGGGACGCTTTTTTAAATGTGTGGCTTTTTATGTTTTTCCGTGGCGGTGATAAAACCGGAAAAAATCCCGAAATTTTGCCTTGTAAAAAAGGCGTCCAGCGGCCGTGGCCTAGGTTTATTATTGCGCTGAAACGCAAATCCTCATCCCTATTCACCACCATTCTTTAAATTTTCAACCGAGTTTTTCGGGTATTTTGGATTATGAAAAATTTTGTAATAATATCAGGAAAATAGAAAACATTGAAAACATTTCGGTGTAATAAAAATTTCTGACCGGATTCCCCCTATAAGATAGATTTTGATTATTAAAATCGAGTTTCAGAGTTATTTTAATTAATATAAACGGTTAGTGTACAAAAAAGAACAATTATTTTTTTGACAGCGACTTTATTCAGAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTAATTCCGATGAATCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTTCGGAACCCTCTTTATATTT</pcr_primer_p2>
		<pcr_amplicon_size>236</pcr_amplicon_size>
		<canonical_amplicon>GTTAATTCCGATGAATCAAAAATTTTTTCTGGAGAAAAATATTTTTTCAACAAGTACAATTTCTGTTGATATTAGTTCGAATTATTTGCTGCCAGAAATCGCTGCTTGTGAGAACGTCCTTTTAAAATTTCCATTGCACCGAAATGTTTCCAATTGGTGTGCATTATATTATTACGAAAAAATCCAAAAAAAAATCCTGGAAAACCGCCGTCGAAAATATAAAGAGGGTTCCGAAG</canonical_amplicon>
		<polymorphic_amplicon>GTTAATTCCGATGAATCAAAAATTTTTTCTGGAGAAAAATATTTTTTCAACAAGTACAATTTCTGTTGATATTAGTTCGAATTATTTGCTGCCAGAAATCGCTGCTTGTGAGAACGTCCTTTTAAAATTTCCATTGCACCGAAATGTTTCCAATTGGTGTGCATTATATTATTACGYAAAAATCCAAAAAAAAATCCTGGAAAACCGCCGTCGAAAATATAAAGAGGGTTCCGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39598</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>298127</contig_pos>
        <strand></strand>
        <context>ACGYAAAAAT[C/T]CAAAAAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGCACCGAAATGTTTCCAATTGGTGTGCATTATATTATTACGAAAAAAT</left_flank>
        <right_flank>CAAAAAAAAATCCTGGAAAACCGCCGTCGAAAATATAAAGAGGGTTCCGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTCGTGAAATAGATAAACACAATTATGGGTAAGCGGCTTTGAATTAATTGAAAAACAAACTGCTATGGTCAATCCAACGTTCAAGCTGTTTCAAAATGGCAAAATTCGAAAGTAGTTTCACTATCAGCAATAGAACCGCGGTCCTATTTGTCTAACATTAAAAAGGAATTCCTATAGCATTTATTTATTTTTTCAAAATTAAAGCTCCGCTAAACTCAAATTAAGTCTTAATTAACAATGACTGTAACTTCTAAAGTTTTCAATTTCCAAGACCGGTGTGAATTTGTTATGAATACTGTTTTTTTCCGTTTCGGTTAATTCCGATGAATCAAAAATTTTTTCTGGAGAAAAATATTTTTTCAACAAGTACAATTTCTGTTGATATTAGTTCGAATTATTTGCTGCCAGAAATCGCTGCTTGTGAGAACGTCCTTTTAAAATTTCCATTGCACCGAAATGTTTCCAATTGGTGTGCATTATATTATTACGAAAAAATCCAAAAAAAAATCCTGGAAAACCGCCGTCGAAAATATAAAGAGGGTTCCGAAGAGGGACGAGTTCCCTCGCAACGAGAAACCTAGGCCACGGCGGCGGGACGCTTTTTTAAATGTGTGGCTTTTTATGTTTTTCCGTGGCGGTGATAAAACCGGAAAAAATCCCGAAATTTTGCCTTGTAAAAAAGGCGTCCAGCGGCCGTGGCCTAGGTTTATTATTGCGCTGAAACGCAAATCCTCATCCCTATTCACCACCATTCTTTAAATTTTCAACCGAGTTTTTCGGGTATTTTGGATTATGAAAAATTTTGTAATAATATCAGGAAAATAGAAAACATTGAAAACATTTCGGTGTAATAAAAATTTCTGACCGGATTCCCCCTATAAGATAGATTTTGATTATTAAAATCGAGTTTCAGAGTTATTTTAATTAATATAAACGGTTAGTGTACAAAAAAGAACAATTATTTTTTTGACAGCGACTTTATTCAGAAGATTTATAC</canonical>
            <polymorphic>CTTTTCGTGAAATAGATAAACACAATTATGGGTAAGCGGCTTTGAATTAATTGAAAAACAAACTGCTATGGTCAATCCAACGTTCAAGCTGTTTCAAAATGGCAAAATTCGAAAGTAGTTTCACTATCAGCAATAGAACCGCGGTCCTATTTGTCTAACATTAAAAAGGAATTCCTATAGCATTTATTTATTTTTTCAAAATTAAAGCTCCGCTAAACTCAAATTAAGTCTTAATTAACAATGACTGTAACTTCTAAAGTTTTCAATTTCCAAGACCGGTGTGAATTTGTTATGAATACTGTTTTTTTCCGTTTCGGTTAATTCCGATGAATCAAAAATTTTTTCTGGAGAAAAATATTTTTTCAACAAGTACAATTTCTGTTGATATTAGTTCGAATTATTTGCTGCCAGAAATCGCTGCTTGTGAGAACGTCCTTTTAAAATTTCCATTGCACCGAAATGTTTCCAATTGGTGTGCATTATATTATTACGAAAAAATYCAAAAAAAAATCCTGGAAAACCGCCGTCGAAAATATAAAGAGGGTTCCGAAGAGGGACGAGTTCCCTCGCAACGAGAAACCTAGGCCACGGCGGCGGGACGCTTTTTTAAATGTGTGGCTTTTTATGTTTTTCCGTGGCGGTGATAAAACCGGAAAAAATCCCGAAATTTTGCCTTGTAAAAAAGGCGTCCAGCGGCCGTGGCCTAGGTTTATTATTGCGCTGAAACGCAAATCCTCATCCCTATTCACCACCATTCTTTAAATTTTCAACCGAGTTTTTCGGGTATTTTGGATTATGAAAAATTTTGTAATAATATCAGGAAAATAGAAAACATTGAAAACATTTCGGTGTAATAAAAATTTCTGACCGGATTCCCCCTATAAGATAGATTTTGATTATTAAAATCGAGTTTCAGAGTTATTTTAATTAATATAAACGGTTAGTGTACAAAAAAGAACAATTATTTTTTTGACAGCGACTTTATTCAGAAGATTTATAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTAATTCCGATGAATCAAAAA</pcr_primer_p1>
		<pcr_primer_p2>CTCTTCGGAACCCTCTTTAT</pcr_primer_p2>
		<pcr_amplicon_size>238</pcr_amplicon_size>
		<canonical_amplicon>GTTAATTCCGATGAATCAAAAATTTTTTCTGGAGAAAAATATTTTTTCAACAAGTACAATTTCTGTTGATATTAGTTCGAATTATTTGCTGCCAGAAATCGCTGCTTGTGAGAACGTCCTTTTAAAATTTCCATTGCACCGAAATGTTTCCAATTGGTGTGCATTATATTATTACGAAAAAATCCAAAAAAAAATCCTGGAAAACCGCCGTCGAAAATATAAAGAGGGTTCCGAAGAG</canonical_amplicon>
		<polymorphic_amplicon>GTTAATTCCGATGAATCAAAAATTTTTTCTGGAGAAAAATATTTTTTCAACAAGTACAATTTCTGTTGATATTAGTTCGAATTATTTGCTGCCAGAAATCGCTGCTTGTGAGAACGTCCTTTTAAAATTTCCATTGCACCGAAATGTTTCCAATTGGTGTGCATTATATTATTACGAAAAAATYCAAAAAAAAATCCTGGAAAACCGCCGTCGAAAATATAAAGAGGGTTCCGAAGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39599</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>298214</contig_pos>
        <strand>+</strand>
        <context>AAACCTAGGC[C/T]ACGGCGGCGG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGAGGGTTCCGAAGAGGGACGAGTTCCCTCGCAACGAGAAACCTAGGC</left_flank>
        <right_flank>ACGGCGGCGGGACGCTTTTTTAAATGTGTGGCTTTTTATGTTTTTCCGTG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTGTTTCAAAATGGCAAAATTCGAAAGTAGTTTCACTATCAGCAATAGAACCGCGGTCCTATTTGTCTAACATTAAAAAGGAATTCCTATAGCATTTATTTATTTTTTCAAAATTAAAGCTCCGCTAAACTCAAATTAAGTCTTAATTAACAATGACTGTAACTTCTAAAGTTTTCAATTTCCAAGACCGGTGTGAATTTGTTATGAATACTGTTTTTTTCCGTTTCGGTTAATTCCGATGAATCAAAAATTTTTTCTGGAGAAAAATATTTTTTCAACAAGTACAATTTCTGTTGATATTAGTTCGAATTATTTGCTGCCAGAAATCGCTGCTTGTGAGAACGTCCTTTTAAAATTTCCATTGCACCGAAATGTTTCCAATTGGTGTGCATTATATTATTACGAAAAAATCCAAAAAAAAATCCTGGAAAACCGCCGTCGAAAATATAAAGAGGGTTCCGAAGAGGGACGAGTTCCCTCGCAACGAGAAACCTAGGCCACGGCGGCGGGACGCTTTTTTAAATGTGTGGCTTTTTATGTTTTTCCGTGGCGGTGATAAAACCGGAAAAAATCCCGAAATTTTGCCTTGTAAAAAAGGCGTCCAGCGGCCGTGGCCTAGGTTTATTATTGCGCTGAAACGCAAATCCTCATCCCTATTCACCACCATTCTTTAAATTTTCAACCGAGTTTTTCGGGTATTTTGGATTATGAAAAATTTTGTAATAATATCAGGAAAATAGAAAACATTGAAAACATTTCGGTGTAATAAAAATTTCTGACCGGATTCCCCCTATAAGATAGATTTTGATTATTAAAATCGAGTTTCAGAGTTATTTTAATTAATATAAACGGTTAGTGTACAAAAAAGAACAATTATTTTTTTGACAGCGACTTTATTCAGAAGATTTATACAGGATATTATAGACTAAAAGTTTCCAAAAACTGATGTTTTATTGCTCTGTTTATCGTTTTTCAAGCTCTCAAAAGTTTGAAACCCAA</canonical>
            <polymorphic>GCTGTTTCAAAATGGCAAAATTCGAAAGTAGTTTCACTATCAGCAATAGAACCGCGGTCCTATTTGTCTAACATTAAAAAGGAATTCCTATAGCATTTATTTATTTTTTCAAAATTAAAGCTCCGCTAAACTCAAATTAAGTCTTAATTAACAATGACTGTAACTTCTAAAGTTTTCAATTTCCAAGACCGGTGTGAATTTGTTATGAATACTGTTTTTTTCCGTTTCGGTTAATTCCGATGAATCAAAAATTTTTTCTGGAGAAAAATATTTTTTCAACAAGTACAATTTCTGTTGATATTAGTTCGAATTATTTGCTGCCAGAAATCGCTGCTTGTGAGAACGTCCTTTTAAAATTTCCATTGCACCGAAATGTTTCCAATTGGTGTGCATTATATTATTACGAAAAAATCCAAAAAAAAATCCTGGAAAACCGCCGTCGAAAATATAAAGAGGGTTCCGAAGAGGGACGAGTTCCCTCGCAACGAGAAACCTAGGCYACGGCGGCGGGACGCTTTTTTAAATGTGTGGCTTTTTATGTTTTTCCGTGGCGGTGATAAAACCGGAAAAAATCCCGAAATTTTGCCTTGTAAAAAAGGCGTCCAGCGGCCGTGGCCTAGGTTTATTATTGCGCTGAAACGCAAATCCTCATCCCTATTCACCACCATTCTTTAAATTTTCAACCGAGTTTTTCGGGTATTTTGGATTATGAAAAATTTTGTAATAATATCAGGAAAATAGAAAACATTGAAAACATTTCGGTGTAATAAAAATTTCTGACCGGATTCCCCCTATAAGATAGATTTTGATTATTAAAATCGAGTTTCAGAGTTATTTTAATTAATATAAACGGTTAGTGTACAAAAAAGAACAATTATTTTTTTGACAGCGACTTTATTCAGAAGATTTATACAGGATATTATAGACTAAAAGTTTCCAAAAACTGATGTTTTATTGCTCTGTTTATCGTTTTTCAAGCTCTCAAAAGTTTGAAACCCAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCCNNNNNGGC</site>
                <isoschizomers>
                    <enzyme>BglI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>441 384 64 52 47 6 6</canonical_bands>
                <polymorphic_bands>441 384 64 53 52 6</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>498 385 111 6</canonical_bands>
                <polymorphic_bands>609 385 6</polymorphic_bands>
            </assay>
            <assay>
                <site>CCRYGG</site>
                <isoschizomers>
                    <enzyme>BstDSI</enzyme>
                    <enzyme>BtgI</enzyme>
                    <enzyme>DsaI</enzyme>
                </isoschizomers>
                <canonical_bands>447 390 64 52 47</canonical_bands>
                <polymorphic_bands>494 390 64 52</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>378 363 120 78 33 22 6</canonical_bands>
                <polymorphic_bands>411 363 120 78 22 6</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>498 385 117</canonical_bands>
                <polymorphic_bands>615 385</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>158 143 141 111 100 95 58 47 36 28 27 21 20 6 3 2 2 2</canonical_bands>
                <polymorphic_bands>158 143 141 138 100 95 58 47 36 28 21 20 6 3 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATATAAAGAGGGTTCCGAAGAG</pcr_primer_p1>
		<pcr_primer_p2>ACTCGGTTGAAAATTTAAAGAAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>ATATAAAGAGGGTTCCGAAGAGGGACGAGTTCCCTCGCAACGAGAAACCTAGGCCACGGCGGCGGGACGCTTTTTTAAATGTGTGGCTTTTTATGTTTTTCCGTGGCGGTGATAAAACCGGAAAAAATCCCGAAATTTTGCCTTGTAAAAAAGGCGTCCAGCGGCCGTGGCCTAGGTTTATTATTGCGCTGAAACGCAAATCCTCATCCCTATTCACCACCATTCTTTAAATTTTCAACCGAGT</canonical_amplicon>
		<polymorphic_amplicon>ATATAAAGAGGGTTCCGAAGAGGGACGAGTTCCCTCGCAACGAGAAACCTAGGCYACGGCGGCGGGACGCTTTTTTAAATGTGTGGCTTTTTATGTTTTTCCGTGGCGGTGATAAAACCGGAAAAAATCCCGAAATTTTGCCTTGTAAAAAAGGCGTCCAGCGGCCGTGGCCTAGGTTTATTATTGCGCTGAAACGCAAATCCTCATCCCTATTCACCACCATTCTTTAAATTTTCAACCGAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39600</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>298290</contig_pos>
        <strand>+</strand>
        <context>GAAAAAATCC[C/T]GAAAYTTTGC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGTGGCTTTTTATGTTTTTCCGTGGCGGTGATAAAACCGGAAAAAATCC</left_flank>
        <right_flank>GAAATTTTGCCTTGTAAAAAAGGCGTCCAGCGGCCGTGGCCTAGGTTTAT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGGAATTCCTATAGCATTTATTTATTTTTTCAAAATTAAAGCTCCGCTAAACTCAAATTAAGTCTTAATTAACAATGACTGTAACTTCTAAAGTTTTCAATTTCCAAGACCGGTGTGAATTTGTTATGAATACTGTTTTTTTCCGTTTCGGTTAATTCCGATGAATCAAAAATTTTTTCTGGAGAAAAATATTTTTTCAACAAGTACAATTTCTGTTGATATTAGTTCGAATTATTTGCTGCCAGAAATCGCTGCTTGTGAGAACGTCCTTTTAAAATTTCCATTGCACCGAAATGTTTCCAATTGGTGTGCATTATATTATTACGAAAAAATCCAAAAAAAAATCCTGGAAAACCGCCGTCGAAAATATAAAGAGGGTTCCGAAGAGGGACGAGTTCCCTCGCAACGAGAAACCTAGGCCACGGCGGCGGGACGCTTTTTTAAATGTGTGGCTTTTTATGTTTTTCCGTGGCGGTGATAAAACCGGAAAAAATCCCGAAATTTTGCCTTGTAAAAAAGGCGTCCAGCGGCCGTGGCCTAGGTTTATTATTGCGCTGAAACGCAAATCCTCATCCCTATTCACCACCATTCTTTAAATTTTCAACCGAGTTTTTCGGGTATTTTGGATTATGAAAAATTTTGTAATAATATCAGGAAAATAGAAAACATTGAAAACATTTCGGTGTAATAAAAATTTCTGACCGGATTCCCCCTATAAGATAGATTTTGATTATTAAAATCGAGTTTCAGAGTTATTTTAATTAATATAAACGGTTAGTGTACAAAAAAGAACAATTATTTTTTTGACAGCGACTTTATTCAGAAGATTTATACAGGATATTATAGACTAAAAGTTTCCAAAAACTGATGTTTTATTGCTCTGTTTATCGTTTTTCAAGCTCTCAAAAGTTTGAAACCCAATTCCCATAAATGTGAACTACATCATCATAGTATTTCTAAAGAAAACTCGAGCTGTTTTTTAATTATTCTGACAAGA</canonical>
            <polymorphic>AAAAGGAATTCCTATAGCATTTATTTATTTTTTCAAAATTAAAGCTCCGCTAAACTCAAATTAAGTCTTAATTAACAATGACTGTAACTTCTAAAGTTTTCAATTTCCAAGACCGGTGTGAATTTGTTATGAATACTGTTTTTTTCCGTTTCGGTTAATTCCGATGAATCAAAAATTTTTTCTGGAGAAAAATATTTTTTCAACAAGTACAATTTCTGTTGATATTAGTTCGAATTATTTGCTGCCAGAAATCGCTGCTTGTGAGAACGTCCTTTTAAAATTTCCATTGCACCGAAATGTTTCCAATTGGTGTGCATTATATTATTACGAAAAAATCCAAAAAAAAATCCTGGAAAACCGCCGTCGAAAATATAAAGAGGGTTCCGAAGAGGGACGAGTTCCCTCGCAACGAGAAACCTAGGCCACGGCGGCGGGACGCTTTTTTAAATGTGTGGCTTTTTATGTTTTTCCGTGGCGGTGATAAAACCGGAAAAAATCCYGAAATTTTGCCTTGTAAAAAAGGCGTCCAGCGGCCGTGGCCTAGGTTTATTATTGCGCTGAAACGCAAATCCTCATCCCTATTCACCACCATTCTTTAAATTTTCAACCGAGTTTTTCGGGTATTTTGGATTATGAAAAATTTTGTAATAATATCAGGAAAATAGAAAACATTGAAAACATTTCGGTGTAATAAAAATTTCTGACCGGATTCCCCCTATAAGATAGATTTTGATTATTAAAATCGAGTTTCAGAGTTATTTTAATTAATATAAACGGTTAGTGTACAAAAAAGAACAATTATTTTTTTGACAGCGACTTTATTCAGAAGATTTATACAGGATATTATAGACTAAAAGTTTCCAAAAACTGATGTTTTATTGCTCTGTTTATCGTTTTTCAAGCTCTCAAAAGTTTGAAACCCAATTCCCATAAATGTGAACTACATCATCATAGTATTTCTAAAGAAAACTCGAGCTGTTTTTTAATTATTCTGACAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTAAATGTGTGGCTTTTTATGTT</pcr_primer_p1>
		<pcr_primer_p2>TATTACACCGAAATGTTTTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAAATGTGTGGCTTTTTATGTTTTTCCGTGGCGGTGATAAAACCGGAAAAAATCCCGAAATTTTGCCTTGTAAAAAAGGCGTCCAGCGGCCGTGGCCTAGGTTTATTATTGCGCTGAAACGCAAATCCTCATCCCTATTCACCACCATTCTTTAAATTTTCAACCGAGTTTTTCGGGTATTTTGGATTATGAAAAATTTTGTAATAATATCAGGAAAATAGAAAACATTGAAAACATTTCGGTGTAATA</canonical_amplicon>
		<polymorphic_amplicon>TTAAATGTGTGGCTTTTTATGTTTTTCCGTGGCGGTGATAAAACCGGAAAAAATCCYGAAATTTTGCCTTGTAAAAAAGGCGTCCAGCGGCCGTGGCCTAGGTTTATTATTGCGCTGAAACGCAAATCCTCATCCCTATTCACCACCATTCTTTAAATTTTCAACCGAGTTTTTCGGGTATTTTGGATTATGAAAAATTTTGTAATAATATCAGGAAAATAGAAAACATTGAAAACATTTCGGTGTAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39601</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>298295</contig_pos>
        <strand>+</strand>
        <context>AATCCYGAAA[C/T]TTTGCCTTGT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCTTTTTATGTTTTTCCGTGGCGGTGATAAAACCGGAAAAAATCCCGAAA</left_flank>
        <right_flank>TTTGCCTTGTAAAAAAGGCGTCCAGCGGCCGTGGCCTAGGTTTATTATTG</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAATTCCTATAGCATTTATTTATTTTTTCAAAATTAAAGCTCCGCTAAACTCAAATTAAGTCTTAATTAACAATGACTGTAACTTCTAAAGTTTTCAATTTCCAAGACCGGTGTGAATTTGTTATGAATACTGTTTTTTTCCGTTTCGGTTAATTCCGATGAATCAAAAATTTTTTCTGGAGAAAAATATTTTTTCAACAAGTACAATTTCTGTTGATATTAGTTCGAATTATTTGCTGCCAGAAATCGCTGCTTGTGAGAACGTCCTTTTAAAATTTCCATTGCACCGAAATGTTTCCAATTGGTGTGCATTATATTATTACGAAAAAATCCAAAAAAAAATCCTGGAAAACCGCCGTCGAAAATATAAAGAGGGTTCCGAAGAGGGACGAGTTCCCTCGCAACGAGAAACCTAGGCCACGGCGGCGGGACGCTTTTTTAAATGTGTGGCTTTTTATGTTTTTCCGTGGCGGTGATAAAACCGGAAAAAATCCCGAAATTTTGCCTTGTAAAAAAGGCGTCCAGCGGCCGTGGCCTAGGTTTATTATTGCGCTGAAACGCAAATCCTCATCCCTATTCACCACCATTCTTTAAATTTTCAACCGAGTTTTTCGGGTATTTTGGATTATGAAAAATTTTGTAATAATATCAGGAAAATAGAAAACATTGAAAACATTTCGGTGTAATAAAAATTTCTGACCGGATTCCCCCTATAAGATAGATTTTGATTATTAAAATCGAGTTTCAGAGTTATTTTAATTAATATAAACGGTTAGTGTACAAAAAAGAACAATTATTTTTTTGACAGCGACTTTATTCAGAAGATTTATACAGGATATTATAGACTAAAAGTTTCCAAAAACTGATGTTTTATTGCTCTGTTTATCGTTTTTCAAGCTCTCAAAAGTTTGAAACCCAATTCCCATAAATGTGAACTACATCATCATAGTATTTCTAAAGAAAACTCGAGCTGTTTTTTAATTATTCTGACAAGATTCTA</canonical>
            <polymorphic>GAATTCCTATAGCATTTATTTATTTTTTCAAAATTAAAGCTCCGCTAAACTCAAATTAAGTCTTAATTAACAATGACTGTAACTTCTAAAGTTTTCAATTTCCAAGACCGGTGTGAATTTGTTATGAATACTGTTTTTTTCCGTTTCGGTTAATTCCGATGAATCAAAAATTTTTTCTGGAGAAAAATATTTTTTCAACAAGTACAATTTCTGTTGATATTAGTTCGAATTATTTGCTGCCAGAAATCGCTGCTTGTGAGAACGTCCTTTTAAAATTTCCATTGCACCGAAATGTTTCCAATTGGTGTGCATTATATTATTACGAAAAAATCCAAAAAAAAATCCTGGAAAACCGCCGTCGAAAATATAAAGAGGGTTCCGAAGAGGGACGAGTTCCCTCGCAACGAGAAACCTAGGCCACGGCGGCGGGACGCTTTTTTAAATGTGTGGCTTTTTATGTTTTTCCGTGGCGGTGATAAAACCGGAAAAAATCCCGAAAYTTTGCCTTGTAAAAAAGGCGTCCAGCGGCCGTGGCCTAGGTTTATTATTGCGCTGAAACGCAAATCCTCATCCCTATTCACCACCATTCTTTAAATTTTCAACCGAGTTTTTCGGGTATTTTGGATTATGAAAAATTTTGTAATAATATCAGGAAAATAGAAAACATTGAAAACATTTCGGTGTAATAAAAATTTCTGACCGGATTCCCCCTATAAGATAGATTTTGATTATTAAAATCGAGTTTCAGAGTTATTTTAATTAATATAAACGGTTAGTGTACAAAAAAGAACAATTATTTTTTTGACAGCGACTTTATTCAGAAGATTTATACAGGATATTATAGACTAAAAGTTTCCAAAAACTGATGTTTTATTGCTCTGTTTATCGTTTTTCAAGCTCTCAAAAGTTTGAAACCCAATTCCCATAAATGTGAACTACATCATCATAGTATTTCTAAAGAAAACTCGAGCTGTTTTTTAATTATTCTGACAAGATTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>310 224 114 105 96 57 53 40 1</canonical_bands>
                <polymorphic_bands>320 310 114 105 57 53 40 1</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>198 126 96 67 62 57 46 40 37 36 34 32 30 26 22 22 21 19 17 11 1</canonical_bands>
                <polymorphic_bands>294 126 67 62 57 46 40 37 36 34 32 30 26 22 22 21 19 17 11 1</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAAATGTGTGGCTTTTTATGTT</pcr_primer_p1>
		<pcr_primer_p2>TATTACACCGAAATGTTTTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAAATGTGTGGCTTTTTATGTTTTTCCGTGGCGGTGATAAAACCGGAAAAAATCCCGAAATTTTGCCTTGTAAAAAAGGCGTCCAGCGGCCGTGGCCTAGGTTTATTATTGCGCTGAAACGCAAATCCTCATCCCTATTCACCACCATTCTTTAAATTTTCAACCGAGTTTTTCGGGTATTTTGGATTATGAAAAATTTTGTAATAATATCAGGAAAATAGAAAACATTGAAAACATTTCGGTGTAATA</canonical_amplicon>
		<polymorphic_amplicon>TTAAATGTGTGGCTTTTTATGTTTTTCCGTGGCGGTGATAAAACCGGAAAAAATCCCGAAAYTTTGCCTTGTAAAAAAGGCGTCCAGCGGCCGTGGCCTAGGTTTATTATTGCGCTGAAACGCAAATCCTCATCCCTATTCACCACCATTCTTTAAATTTTCAACCGAGTTTTTCGGGTATTTTGGATTATGAAAAATTTTGTAATAATATCAGGAAAATAGAAAACATTGAAAACATTTCGGTGTAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39602</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>298331</contig_pos>
        <strand>+</strand>
        <context>CGGCCGTGGC[C/T]TARGTTTATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAAATCCCGAAATTTTGCCTTGTAAAAAAGGCGTCCAGCGGCCGTGGC</left_flank>
        <right_flank>TAGGTTTATTATTGCGCTGAAACGCAAATCCTCATCCCTATTCACCACCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGCTCCGCTAAACTCAAATTAAGTCTTAATTAACAATGACTGTAACTTCTAAAGTTTTCAATTTCCAAGACCGGTGTGAATTTGTTATGAATACTGTTTTTTTCCGTTTCGGTTAATTCCGATGAATCAAAAATTTTTTCTGGAGAAAAATATTTTTTCAACAAGTACAATTTCTGTTGATATTAGTTCGAATTATTTGCTGCCAGAAATCGCTGCTTGTGAGAACGTCCTTTTAAAATTTCCATTGCACCGAAATGTTTCCAATTGGTGTGCATTATATTATTACGAAAAAATCCAAAAAAAAATCCTGGAAAACCGCCGTCGAAAATATAAAGAGGGTTCCGAAGAGGGACGAGTTCCCTCGCAACGAGAAACCTAGGCCACGGCGGCGGGACGCTTTTTTAAATGTGTGGCTTTTTATGTTTTTCCGTGGCGGTGATAAAACCGGAAAAAATCCCGAAATTTTGCCTTGTAAAAAAGGCGTCCAGCGGCCGTGGCCTAGGTTTATTATTGCGCTGAAACGCAAATCCTCATCCCTATTCACCACCATTCTTTAAATTTTCAACCGAGTTTTTCGGGTATTTTGGATTATGAAAAATTTTGTAATAATATCAGGAAAATAGAAAACATTGAAAACATTTCGGTGTAATAAAAATTTCTGACCGGATTCCCCCTATAAGATAGATTTTGATTATTAAAATCGAGTTTCAGAGTTATTTTAATTAATATAAACGGTTAGTGTACAAAAAAGAACAATTATTTTTTTGACAGCGACTTTATTCAGAAGATTTATACAGGATATTATAGACTAAAAGTTTCCAAAAACTGATGTTTTATTGCTCTGTTTATCGTTTTTCAAGCTCTCAAAAGTTTGAAACCCAATTCCCATAAATGTGAACTACATCATCATAGTATTTCTAAAGAAAACTCGAGCTGTTTTTTAATTATTCTGACAAGATTCTAGACTGAAAACTTCCGTGTATGCTTACTAGAAAGTAC</canonical>
            <polymorphic>AAGCTCCGCTAAACTCAAATTAAGTCTTAATTAACAATGACTGTAACTTCTAAAGTTTTCAATTTCCAAGACCGGTGTGAATTTGTTATGAATACTGTTTTTTTCCGTTTCGGTTAATTCCGATGAATCAAAAATTTTTTCTGGAGAAAAATATTTTTTCAACAAGTACAATTTCTGTTGATATTAGTTCGAATTATTTGCTGCCAGAAATCGCTGCTTGTGAGAACGTCCTTTTAAAATTTCCATTGCACCGAAATGTTTCCAATTGGTGTGCATTATATTATTACGAAAAAATCCAAAAAAAAATCCTGGAAAACCGCCGTCGAAAATATAAAGAGGGTTCCGAAGAGGGACGAGTTCCCTCGCAACGAGAAACCTAGGCCACGGCGGCGGGACGCTTTTTTAAATGTGTGGCTTTTTATGTTTTTCCGTGGCGGTGATAAAACCGGAAAAAATCCCGAAATTTTGCCTTGTAAAAAAGGCGTCCAGCGGCCGTGGCYTAGGTTTATTATTGCGCTGAAACGCAAATCCTCATCCCTATTCACCACCATTCTTTAAATTTTCAACCGAGTTTTTCGGGTATTTTGGATTATGAAAAATTTTGTAATAATATCAGGAAAATAGAAAACATTGAAAACATTTCGGTGTAATAAAAATTTCTGACCGGATTCCCCCTATAAGATAGATTTTGATTATTAAAATCGAGTTTCAGAGTTATTTTAATTAATATAAACGGTTAGTGTACAAAAAAGAACAATTATTTTTTTGACAGCGACTTTATTCAGAAGATTTATACAGGATATTATAGACTAAAAGTTTCCAAAAACTGATGTTTTATTGCTCTGTTTATCGTTTTTCAAGCTCTCAAAAGTTTGAAACCCAATTCCCATAAATGTGAACTACATCATCATAGTATTTCTAAAGAAAACTCGAGCTGTTTTTTAATTATTCTGACAAGATTCTAGACTGAAAACTTCCGTGTATGCTTACTAGAAAGTAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCTAGG</site>
                <isoschizomers>
                    <enzyme>AvrII</enzyme>
                    <enzyme>BlnI</enzyme>
                    <enzyme>BspA2I</enzyme>
                    <enzyme>XmaJI</enzyme>
                </isoschizomers>
                <canonical_bands>501 376 123</canonical_bands>
                <polymorphic_bands>624 376</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>462 377 123 28 10</canonical_bands>
                <polymorphic_bands>585 377 28 10</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>501 376 64 47 6 6</canonical_bands>
                <polymorphic_bands>507 376 64 47 6</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>502 381 111 6</canonical_bands>
                <polymorphic_bands>508 381 111</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>501 376 123</canonical_bands>
                <polymorphic_bands>624 376</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>378 363 78 73 66 33 6 3</canonical_bands>
                <polymorphic_bands>378 369 78 73 66 33 3</polymorphic_bands>
            </assay>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 381 117</canonical_bands>
                <polymorphic_bands>619 381</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAAATGTGTGGCTTTTTATGTT</pcr_primer_p1>
		<pcr_primer_p2>TATTACACCGAAATGTTTTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAAATGTGTGGCTTTTTATGTTTTTCCGTGGCGGTGATAAAACCGGAAAAAATCCCGAAATTTTGCCTTGTAAAAAAGGCGTCCAGCGGCCGTGGCCTAGGTTTATTATTGCGCTGAAACGCAAATCCTCATCCCTATTCACCACCATTCTTTAAATTTTCAACCGAGTTTTTCGGGTATTTTGGATTATGAAAAATTTTGTAATAATATCAGGAAAATAGAAAACATTGAAAACATTTCGGTGTAATA</canonical_amplicon>
		<polymorphic_amplicon>TTAAATGTGTGGCTTTTTATGTTTTTCCGTGGCGGTGATAAAACCGGAAAAAATCCCGAAATTTTGCCTTGTAAAAAAGGCGTCCAGCGGCCGTGGCYTAGGTTTATTATTGCGCTGAAACGCAAATCCTCATCCCTATTCACCACCATTCTTTAAATTTTCAACCGAGTTTTTCGGGTATTTTGGATTATGAAAAATTTTGTAATAATATCAGGAAAATAGAAAACATTGAAAACATTTCGGTGTAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39603</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>298334</contig_pos>
        <strand>+</strand>
        <context>CCGTGGCYTA[A/G]GTTTATTATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATCCCGAAATTTTGCCTTGTAAAAAAGGCGTCCAGCGGCCGTGGCCTA</left_flank>
        <right_flank>GTTTATTATTGCGCTGAAACGCAAATCCTCATCCCTATTCACCACCATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCCGCTAAACTCAAATTAAGTCTTAATTAACAATGACTGTAACTTCTAAAGTTTTCAATTTCCAAGACCGGTGTGAATTTGTTATGAATACTGTTTTTTTCCGTTTCGGTTAATTCCGATGAATCAAAAATTTTTTCTGGAGAAAAATATTTTTTCAACAAGTACAATTTCTGTTGATATTAGTTCGAATTATTTGCTGCCAGAAATCGCTGCTTGTGAGAACGTCCTTTTAAAATTTCCATTGCACCGAAATGTTTCCAATTGGTGTGCATTATATTATTACGAAAAAATCCAAAAAAAAATCCTGGAAAACCGCCGTCGAAAATATAAAGAGGGTTCCGAAGAGGGACGAGTTCCCTCGCAACGAGAAACCTAGGCCACGGCGGCGGGACGCTTTTTTAAATGTGTGGCTTTTTATGTTTTTCCGTGGCGGTGATAAAACCGGAAAAAATCCCGAAATTTTGCCTTGTAAAAAAGGCGTCCAGCGGCCGTGGCCTAGGTTTATTATTGCGCTGAAACGCAAATCCTCATCCCTATTCACCACCATTCTTTAAATTTTCAACCGAGTTTTTCGGGTATTTTGGATTATGAAAAATTTTGTAATAATATCAGGAAAATAGAAAACATTGAAAACATTTCGGTGTAATAAAAATTTCTGACCGGATTCCCCCTATAAGATAGATTTTGATTATTAAAATCGAGTTTCAGAGTTATTTTAATTAATATAAACGGTTAGTGTACAAAAAAGAACAATTATTTTTTTGACAGCGACTTTATTCAGAAGATTTATACAGGATATTATAGACTAAAAGTTTCCAAAAACTGATGTTTTATTGCTCTGTTTATCGTTTTTCAAGCTCTCAAAAGTTTGAAACCCAATTCCCATAAATGTGAACTACATCATCATAGTATTTCTAAAGAAAACTCGAGCTGTTTTTTAATTATTCTGACAAGATTCTAGACTGAAAACTTCCGTGTATGCTTACTAGAAAGTACATT</canonical>
            <polymorphic>CTCCGCTAAACTCAAATTAAGTCTTAATTAACAATGACTGTAACTTCTAAAGTTTTCAATTTCCAAGACCGGTGTGAATTTGTTATGAATACTGTTTTTTTCCGTTTCGGTTAATTCCGATGAATCAAAAATTTTTTCTGGAGAAAAATATTTTTTCAACAAGTACAATTTCTGTTGATATTAGTTCGAATTATTTGCTGCCAGAAATCGCTGCTTGTGAGAACGTCCTTTTAAAATTTCCATTGCACCGAAATGTTTCCAATTGGTGTGCATTATATTATTACGAAAAAATCCAAAAAAAAATCCTGGAAAACCGCCGTCGAAAATATAAAGAGGGTTCCGAAGAGGGACGAGTTCCCTCGCAACGAGAAACCTAGGCCACGGCGGCGGGACGCTTTTTTAAATGTGTGGCTTTTTATGTTTTTCCGTGGCGGTGATAAAACCGGAAAAAATCCCGAAATTTTGCCTTGTAAAAAAGGCGTCCAGCGGCCGTGGCCTARGTTTATTATTGCGCTGAAACGCAAATCCTCATCCCTATTCACCACCATTCTTTAAATTTTCAACCGAGTTTTTCGGGTATTTTGGATTATGAAAAATTTTGTAATAATATCAGGAAAATAGAAAACATTGAAAACATTTCGGTGTAATAAAAATTTCTGACCGGATTCCCCCTATAAGATAGATTTTGATTATTAAAATCGAGTTTCAGAGTTATTTTAATTAATATAAACGGTTAGTGTACAAAAAAGAACAATTATTTTTTTGACAGCGACTTTATTCAGAAGATTTATACAGGATATTATAGACTAAAAGTTTCCAAAAACTGATGTTTTATTGCTCTGTTTATCGTTTTTCAAGCTCTCAAAAGTTTGAAACCCAATTCCCATAAATGTGAACTACATCATCATAGTATTTCTAAAGAAAACTCGAGCTGTTTTTTAATTATTCTGACAAGATTCTAGACTGAAAACTTCCGTGTATGCTTACTAGAAAGTACATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCTAGG</site>
                <isoschizomers>
                    <enzyme>AvrII</enzyme>
                    <enzyme>BlnI</enzyme>
                    <enzyme>BspA2I</enzyme>
                    <enzyme>XmaJI</enzyme>
                </isoschizomers>
                <canonical_bands>504 373 123</canonical_bands>
                <polymorphic_bands>627 373</polymorphic_bands>
            </assay>
            <assay>
                <site>CTAG</site>
                <isoschizomers>
                    <enzyme>BfaI</enzyme>
                    <enzyme>MaeI</enzyme>
                    <enzyme>XspI</enzyme>
                </isoschizomers>
                <canonical_bands>462 374 123 28 13</canonical_bands>
                <polymorphic_bands>585 374 28 13</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>504 373 64 47 6 6</canonical_bands>
                <polymorphic_bands>510 373 64 47 6</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>504 373 123</canonical_bands>
                <polymorphic_bands>627 373</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAAATGTGTGGCTTTTTATGTT</pcr_primer_p1>
		<pcr_primer_p2>TATTACACCGAAATGTTTTCAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAAATGTGTGGCTTTTTATGTTTTTCCGTGGCGGTGATAAAACCGGAAAAAATCCCGAAATTTTGCCTTGTAAAAAAGGCGTCCAGCGGCCGTGGCCTAGGTTTATTATTGCGCTGAAACGCAAATCCTCATCCCTATTCACCACCATTCTTTAAATTTTCAACCGAGTTTTTCGGGTATTTTGGATTATGAAAAATTTTGTAATAATATCAGGAAAATAGAAAACATTGAAAACATTTCGGTGTAATA</canonical_amplicon>
		<polymorphic_amplicon>TTAAATGTGTGGCTTTTTATGTTTTTCCGTGGCGGTGATAAAACCGGAAAAAATCCCGAAATTTTGCCTTGTAAAAAAGGCGTCCAGCGGCCGTGGCCTARGTTTATTATTGCGCTGAAACGCAAATCCTCATCCCTATTCACCACCATTCTTTAAATTTTCAACCGAGTTTTTCGGGTATTTTGGATTATGAAAAATTTTGTAATAATATCAGGAAAATAGAAAACATTGAAAACATTTCGGTGTAATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39604</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>299087</contig_pos>
        <strand></strand>
        <context>CTACTACCAA[C/T]TGATATGATT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAGACGAAAGAGTTCGGAGTGGAAGACAATTGATAATAACTACTACCAA</left_flank>
        <right_flank>TGATATGATTTTCTCTTACGATTTGTCTTGGAAGATATAAAAATAGAAAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATTTTTTTGACAGCGACTTTATTCAGAAGATTTATACAGGATATTATAGACTAAAAGTTTCCAAAAACTGATGTTTTATTGCTCTGTTTATCGTTTTTCAAGCTCTCAAAAGTTTGAAACCCAATTCCCATAAATGTGAACTACATCATCATAGTATTTCTAAAGAAAACTCGAGCTGTTTTTTAATTATTCTGACAAGATTCTAGACTGAAAACTTCCGTGTATGCTTACTAGAAAGTACATTAACTAGAACACCTGGTATTCTCAGAAAATAATTGGCAAGGAACATTTTCGTTTTTTCGAAGAATCAATAGAAAAAAGCATAAAGAAAATTGTAGAGAAATGAAAATGAAGGTGCCAGAAATTAATAATTCCAGAATCAGTTTCTGCTTCTATAGAATTGTCGTTGACCAACTTTTGGTCGCTTCAGAATCCGAATATTTTAAAAAGACGAAAGAGTTCGGAGTGGAAGACAATTGATAATAACTACTACCAACTGATATGATTTTCTCTTACGATTTGTCTTGGAAGATATAAAAATAGAAATATAAATGTGACTTTTGGAATTCAGAAATCTCCTTTATATTTCTAGAGTAGGGAGAAATGTACTTTTTGTATGTTAGAAAAAGAGCATCTGATAGACATGACAACAAATTTCGGATGAATTTTGCACAGCTGGGGGAACTTCGGAAACTTCAAAAAACGTGTCAATAGATTGAGGAAGGAAAATAGACGGAAAAGAGTCTTATAAATAAATAATAAAAAAGAGACTGGCGCCCAGAAGGTCCTTTTGTAACGTTGGCGGGGGACAAAATAGAGAAGAAGAAGAAGAAGAAAAGGGGACCTATCGAGTTTCAGAAATGAAAAAGACCTCGTTGAGCTGATCGATTTGGGTCAGAATAGATGGGTCTTGGAACAAAAACATACTTTGAAAAAAGACGAAGAAGCTGGATGGAAGGGACAGGAGTTTACGATTTTATGACCCGGCTGATGTGTT</canonical>
            <polymorphic>ATTATTTTTTTGACAGCGACTTTATTCAGAAGATTTATACAGGATATTATAGACTAAAAGTTTCCAAAAACTGATGTTTTATTGCTCTGTTTATCGTTTTTCAAGCTCTCAAAAGTTTGAAACCCAATTCCCATAAATGTGAACTACATCATCATAGTATTTCTAAAGAAAACTCGAGCTGTTTTTTAATTATTCTGACAAGATTCTAGACTGAAAACTTCCGTGTATGCTTACTAGAAAGTACATTAACTAGAACACCTGGTATTCTCAGAAAATAATTGGCAAGGAACATTTTCGTTTTTTCGAAGAATCAATAGAAAAAAGCATAAAGAAAATTGTAGAGAAATGAAAATGAAGGTGCCAGAAATTAATAATTCCAGAATCAGTTTCTGCTTCTATAGAATTGTCGTTGACCAACTTTTGGTCGCTTCAGAATCCGAATATTTTAAAAAGACGAAAGAGTTCGGAGTGGAAGACAATTGATAATAACTACTACCAAYTGATATGATTTTCTCTTACGATTTGTCTTGGAAGATATAAAAATAGAAATATAAATGTGACTTTTGGAATTCAGAAATCTCCTTTATATTTCTAGAGTAGGGAGAAATGTACTTTTTGTATGTTAGAAAAAGAGCATCTGATAGACATGACAACAAATTTCGGATGAATTTTGCACAGCTGGGGGAACTTCGGAAACTTCAAAAAACGTGTCAATAGATTGAGGAAGGAAAATAGACGGAAAAGAGTCTTATAAATAAATAATAAAAAAGAGACTGGCGCCCAGAAGGTCCTTTTGTAACGTTGGCGGGGGACAAAATAGAGAAGAAGAAGAAGAAGAAAAGGGGACCTATCGAGTTTCAGAAATGAAAAAGACCTCGTTGAGCTGATCGATTTGGGTCAGAATAGATGGGTCTTGGAACAAAAACATACTTTGAAAAAAGACGAAGAAGCTGGATGGAAGGGACAGGAGTTTACGATTTTATGACCCGGCTGATGTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTATAGAATTGTCGTTGACCA</pcr_primer_p1>
		<pcr_primer_p2>CTATCAGATGCTCTTTTTCTAACA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCTATAGAATTGTCGTTGACCAACTTTTGGTCGCTTCAGAATCCGAATATTTTAAAAAGACGAAAGAGTTCGGAGTGGAAGACAATTGATAATAACTACTACCAACTGATATGATTTTCTCTTACGATTTGTCTTGGAAGATATAAAAATAGAAATATAAATGTGACTTTTGGAATTCAGAAATCTCCTTTATATTTCTAGAGTAGGGAGAAATGTACTTTTTGTATGTTAGAAAAAGAGCATCTGATAG</canonical_amplicon>
		<polymorphic_amplicon>TCTATAGAATTGTCGTTGACCAACTTTTGGTCGCTTCAGAATCCGAATATTTTAAAAAGACGAAAGAGTTCGGAGTGGAAGACAATTGATAATAACTACTACCAAYTGATATGATTTTCTCTTACGATTTGTCTTGGAAGATATAAAAATAGAAATATAAATGTGACTTTTGGAATTCAGAAATCTCCTTTATATTTCTAGAGTAGGGAGAAATGTACTTTTTGTATGTTAGAAAAAGAGCATCTGATAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39605</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>299251</contig_pos>
        <strand></strand>
        <context>CAAATTTCGG[A/G]TGAATTTTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTGTATGTTAGAAAAAGAGCATCTGATAGACATGACAACAAATTTCGG</left_flank>
        <right_flank>TGAATTTTGCACAGCTGGGGGAACTTCGGAAACTTCAAAAAACGTGTCAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGAAAACTCGAGCTGTTTTTTAATTATTCTGACAAGATTCTAGACTGAAAACTTCCGTGTATGCTTACTAGAAAGTACATTAACTAGAACACCTGGTATTCTCAGAAAATAATTGGCAAGGAACATTTTCGTTTTTTCGAAGAATCAATAGAAAAAAGCATAAAGAAAATTGTAGAGAAATGAAAATGAAGGTGCCAGAAATTAATAATTCCAGAATCAGTTTCTGCTTCTATAGAATTGTCGTTGACCAACTTTTGGTCGCTTCAGAATCCGAATATTTTAAAAAGACGAAAGAGTTCGGAGTGGAAGACAATTGATAATAACTACTACCAACTGATATGATTTTCTCTTACGATTTGTCTTGGAAGATATAAAAATAGAAATATAAATGTGACTTTTGGAATTCAGAAATCTCCTTTATATTTCTAGAGTAGGGAGAAATGTACTTTTTGTATGTTAGAAAAAGAGCATCTGATAGACATGACAACAAATTTCGGATGAATTTTGCACAGCTGGGGGAACTTCGGAAACTTCAAAAAACGTGTCAATAGATTGAGGAAGGAAAATAGACGGAAAAGAGTCTTATAAATAAATAATAAAAAAGAGACTGGCGCCCAGAAGGTCCTTTTGTAACGTTGGCGGGGGACAAAATAGAGAAGAAGAAGAAGAAGAAAAGGGGACCTATCGAGTTTCAGAAATGAAAAAGACCTCGTTGAGCTGATCGATTTGGGTCAGAATAGATGGGTCTTGGAACAAAAACATACTTTGAAAAAAGACGAAGAAGCTGGATGGAAGGGACAGGAGTTTACGATTTTATGACCCGGCTGATGTGTTGTTGGGAATTGAATGAAAATTGGAGGGATCAATTAGAAAACTCGGAAAAAACTGAAAAAAAATTGAGTTGACAGTGTCTTGTAGAGCTAAATTGATGAGGAACAAGCTAACGAAAAAAGAAGACGACTTCGGATGGAAACCGAGAAGAAAGAAGAAGAAGAAGA</canonical>
            <polymorphic>AAAGAAAACTCGAGCTGTTTTTTAATTATTCTGACAAGATTCTAGACTGAAAACTTCCGTGTATGCTTACTAGAAAGTACATTAACTAGAACACCTGGTATTCTCAGAAAATAATTGGCAAGGAACATTTTCGTTTTTTCGAAGAATCAATAGAAAAAAGCATAAAGAAAATTGTAGAGAAATGAAAATGAAGGTGCCAGAAATTAATAATTCCAGAATCAGTTTCTGCTTCTATAGAATTGTCGTTGACCAACTTTTGGTCGCTTCAGAATCCGAATATTTTAAAAAGACGAAAGAGTTCGGAGTGGAAGACAATTGATAATAACTACTACCAACTGATATGATTTTCTCTTACGATTTGTCTTGGAAGATATAAAAATAGAAATATAAATGTGACTTTTGGAATTCAGAAATCTCCTTTATATTTCTAGAGTAGGGAGAAATGTACTTTTTGTATGTTAGAAAAAGAGCATCTGATAGACATGACAACAAATTTCGGRTGAATTTTGCACAGCTGGGGGAACTTCGGAAACTTCAAAAAACGTGTCAATAGATTGAGGAAGGAAAATAGACGGAAAAGAGTCTTATAAATAAATAATAAAAAAGAGACTGGCGCCCAGAAGGTCCTTTTGTAACGTTGGCGGGGGACAAAATAGAGAAGAAGAAGAAGAAGAAAAGGGGACCTATCGAGTTTCAGAAATGAAAAAGACCTCGTTGAGCTGATCGATTTGGGTCAGAATAGATGGGTCTTGGAACAAAAACATACTTTGAAAAAAGACGAAGAAGCTGGATGGAAGGGACAGGAGTTTACGATTTTATGACCCGGCTGATGTGTTGTTGGGAATTGAATGAAAATTGGAGGGATCAATTAGAAAACTCGGAAAAAACTGAAAAAAAATTGAGTTGACAGTGTCTTGTAGAGCTAAATTGATGAGGAACAAGCTAACGAAAAAAGAAGACGACTTCGGATGGAAACCGAGAAGAAAGAAGAAGAAGAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>168 162 144 107 87 74 66 40 33 32 30 28 23 6</canonical_bands>
                <polymorphic_bands>168 162 144 107 87 74 66 53 40 33 32 28 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGGAGAAATGTACTTTTTGTATG</pcr_primer_p1>
		<pcr_primer_p2>CCTTTTCTTCTTCTTCTTCTTCT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GGGAGAAATGTACTTTTTGTATGTTAGAAAAAGAGCATCTGATAGACATGACAACAAATTTCGGATGAATTTTGCACAGCTGGGGGAACTTCGGAAACTTCAAAAAACGTGTCAATAGATTGAGGAAGGAAAATAGACGGAAAAGAGTCTTATAAATAAATAATAAAAAAGAGACTGGCGCCCAGAAGGTCCTTTTGTAACGTTGGCGGGGGACAAAATAGAGAAGAAGAAGAAGAAGAAAAGG</canonical_amplicon>
		<polymorphic_amplicon>GGGAGAAATGTACTTTTTGTATGTTAGAAAAAGAGCATCTGATAGACATGACAACAAATTTCGGRTGAATTTTGCACAGCTGGGGGAACTTCGGAAACTTCAAAAAACGTGTCAATAGATTGAGGAAGGAAAATAGACGGAAAAGAGTCTTATAAATAAATAATAAAAAAGAGACTGGCGCCCAGAAGGTCCTTTTGTAACGTTGGCGGGGGACAAAATAGAGAAGAAGAAGAAGAAGAAAAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39606</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>399948</contig_pos>
        <strand></strand>
        <context>tatttcaaaa[C/A]aagwattttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AGTGGTCTAGCGGTCATACCAGTTTCTGGATCGCTGAACTTATTTCAAAA</left_flank>
        <right_flank>AAGAATTTTTTAAAAACGGACTGATTAGTCTCCGGCAACCTACTCATGGT</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCATAGGAGCCAAGAAAAATTGGCTCAAAGACAGCGTGGGAGCTCCTATTGAAAAATCATTAAACAGTTCCTATTTTGTGTAGCTATTTTAATATCCAGTCGTTGAAATTACTTTCCTGAACTTTTAGAAGTTTTAAATGAATTCTGAAGCTCAGAATTTATCCAAACAGGACGAAGATTTCCTAGTCCATTGCCACTCGGTCACCATGATTTCGATTTCGAATCAATCCTCATCTTCGGTATTTTCGTCTGTTCCTTCTGAATTTTAATGATATTTCGCTGTATTCAGTGCCATGGTTTTTTCTCGAAAAATCGACAAATAAGAGTAATGACTTAGAAAGCATGGTGGCTGTGTGGCCATGGACTGGGAAATCCTCTTCCCTCCCGCACGATTAGAGAAATTTTCTTGACAGCAAAACTGTGCCACATCCGGCCGCAGCATTTTGGATAGTGGTCTAGCGGTCATACCAGTTTCTGGATCGCTGAACTTATTTCAAAACAAGAATTTTTTAAAAACGGACTGATTAGTCTCCGGCAACCTACTCATGGTCTGAGTCACGGTCGCGATTTGCATAGACTAATTTCCACATTTGCCTCATCCAAAATAGACTACAGTCGCCATCATTATGTTATCATTTTAGTATGATACCGTAATCATCAAAGGGTGTGACTCAGTGGTCAGTGATCAATGATGTAGGAAATCTTTTAAACACATTACTGGCGGTTGTTTGACCATTACCTTATCTTCCTTAACTTCTGACCCATACCCCCCCCCCCCCCCCCATTCCAACTCATGATAAAGTGTTACTACACACCCATTCAGTCTGTAAAATGCGTTTTCTAATTTTGCTTACTCTGATTTTTAGTTTTTCGAATGCTCTCAATATTCTGTTCTATCAAGCAGTTATCGGACCATCCCATATAGCGTATTTGAGAACAACCATCAAGAAATTGTTGGATAGAGGACATACCGTTGTATGTTTTTTTTCTGAATTTATGT</canonical>
            <polymorphic>TCATAGGAGCCAAGAAAAATTGGCTCAAAGACAGCGTGGGAGCTCCTATTGAAAAATCATTAAACAGTTCCTATTTTGTGTAGCTATTTTAATATCCAGTCGTTGAAATTACTTTCCTGAACTTTTAGAAGTTTTAAATGAATTCTGAAGCTCAGAATTTATCCAAACAGGACGAAGATTTCCTAGTCCATTGCCACTCGGTCACCATGATTTCGATTTCGAATCAATCCTCATCTTCGGTATTTTCGTCTGTTCCTTCTGAATTTTAATGATATTTCGCTGTATTCAGTGCCATGGTTTTTTCTCGAAAAATCGACAAATAAGAGTAATGACTTAGAAAGCATGGTGGCTGTGTGGCCATGGACTGGGAAATCCTCTTCCCTCCCGCACGATTAGAGAAATTTTCTTGACAGCAAAACTGTGCCACATCCGGCCGCAGCATTTTGGATAGTGGTCTAGCGGTCATACCAGTTTCTGGATCGCTGAACTTATTTCAAAAMAAGAATTTTTTAAAAACGGACTGATTAGTCTCCGGCAACCTACTCATGGTCTGAGTCACGGTCGCGATTTGCATAGACTAATTTCCACATTTGCCTCATCCAAAATAGACTACAGTCGCCATCATTATGTTATCATTTTAGTATGATACCGTAATCATCAAAGGGTGTGACTCAGTGGTCAGTGATCAATGATGTAGGAAATCTTTTAAACACATTACTGGCGGTTGTTTGACCATTACCTTATCTTCCTTAACTTCTGACCCATACCCCCCCCCCCCCCCCCATTCCAACTCATGATAAAGTGTTACTACACACCCATTCAGTCTGTAAAATGCGTTTTCTAATTTTGCTTACTCTGATTTTTAGTTTTTCGAATGCTCTCAATATTCTGTTCTATCAAGCAGTTATCGGACCATCCCATATAGCGTATTTGAGAACAACCATCAAGAAATTGTTGGATAGAGGACATACCGTTGTATGTTTTTTTTCTGAATTTATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CGACAAATAAGAGTAATGACTTAGAA</pcr_primer_p1>
		<pcr_primer_p2>GTGGAAATTAGTCTATGCAAATC</pcr_primer_p2>
		<pcr_amplicon_size>275</pcr_amplicon_size>
		<canonical_amplicon>CGACAAATAAGAGTAATGACTTAGAAAGCATGGTGGCTGTGTGGCCATGGACTGGGAAATCCTCTTCCCTCCCGCACGATTAGAGAAATTTTCTTGACAGCAAAACTGTGCCACATCCGGCCGCAGCATTTTGGATAGTGGTCTAGCGGTCATACCAGTTTCTGGATCGCTGAACTTATTTCAAAACAAGAATTTTTTAAAAACGGACTGATTAGTCTCCGGCAACCTACTCATGGTCTGAGTCACGGTCGCGATTTGCATAGACTAATTTCCAC</canonical_amplicon>
		<polymorphic_amplicon>CGACAAATAAGAGTAATGACTTAGAAAGCATGGTGGCTGTGTGGCCATGGACTGGGAAATCCTCTTCCCTCCCGCACGATTAGAGAAATTTTCTTGACAGCAAAACTGTGCCACATCCGGCCGCAGCATTTTGGATAGTGGTCTAGCGGTCATACCAGTTTCTGGATCGCTGAACTTATTTCAAAAMAAGAATTTTTTAAAAACGGACTGATTAGTCTCCGGCAACCTACTCATGGTCTGAGTCACGGTCGCGATTTGCATAGACTAATTTCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39607</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>399952</contig_pos>
        <strand></strand>
        <context>tcaaaamaag[A/T]attttttaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTCTAGCGGTCATACCAGTTTCTGGATCGCTGAACTTATTTCAAAACAAG</left_flank>
        <right_flank>ATTTTTTAAAAACGGACTGATTAGTCTCCGGCAACCTACTCATGGTCTGA</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGAGCCAAGAAAAATTGGCTCAAAGACAGCGTGGGAGCTCCTATTGAAAAATCATTAAACAGTTCCTATTTTGTGTAGCTATTTTAATATCCAGTCGTTGAAATTACTTTCCTGAACTTTTAGAAGTTTTAAATGAATTCTGAAGCTCAGAATTTATCCAAACAGGACGAAGATTTCCTAGTCCATTGCCACTCGGTCACCATGATTTCGATTTCGAATCAATCCTCATCTTCGGTATTTTCGTCTGTTCCTTCTGAATTTTAATGATATTTCGCTGTATTCAGTGCCATGGTTTTTTCTCGAAAAATCGACAAATAAGAGTAATGACTTAGAAAGCATGGTGGCTGTGTGGCCATGGACTGGGAAATCCTCTTCCCTCCCGCACGATTAGAGAAATTTTCTTGACAGCAAAACTGTGCCACATCCGGCCGCAGCATTTTGGATAGTGGTCTAGCGGTCATACCAGTTTCTGGATCGCTGAACTTATTTCAAAACAAGAATTTTTTAAAAACGGACTGATTAGTCTCCGGCAACCTACTCATGGTCTGAGTCACGGTCGCGATTTGCATAGACTAATTTCCACATTTGCCTCATCCAAAATAGACTACAGTCGCCATCATTATGTTATCATTTTAGTATGATACCGTAATCATCAAAGGGTGTGACTCAGTGGTCAGTGATCAATGATGTAGGAAATCTTTTAAACACATTACTGGCGGTTGTTTGACCATTACCTTATCTTCCTTAACTTCTGACCCATACCCCCCCCCCCCCCCCCATTCCAACTCATGATAAAGTGTTACTACACACCCATTCAGTCTGTAAAATGCGTTTTCTAATTTTGCTTACTCTGATTTTTAGTTTTTCGAATGCTCTCAATATTCTGTTCTATCAAGCAGTTATCGGACCATCCCATATAGCGTATTTGAGAACAACCATCAAGAAATTGTTGGATAGAGGACATACCGTTGTATGTTTTTTTTCTGAATTTATGTCAGA</canonical>
            <polymorphic>AGGAGCCAAGAAAAATTGGCTCAAAGACAGCGTGGGAGCTCCTATTGAAAAATCATTAAACAGTTCCTATTTTGTGTAGCTATTTTAATATCCAGTCGTTGAAATTACTTTCCTGAACTTTTAGAAGTTTTAAATGAATTCTGAAGCTCAGAATTTATCCAAACAGGACGAAGATTTCCTAGTCCATTGCCACTCGGTCACCATGATTTCGATTTCGAATCAATCCTCATCTTCGGTATTTTCGTCTGTTCCTTCTGAATTTTAATGATATTTCGCTGTATTCAGTGCCATGGTTTTTTCTCGAAAAATCGACAAATAAGAGTAATGACTTAGAAAGCATGGTGGCTGTGTGGCCATGGACTGGGAAATCCTCTTCCCTCCCGCACGATTAGAGAAATTTTCTTGACAGCAAAACTGTGCCACATCCGGCCGCAGCATTTTGGATAGTGGTCTAGCGGTCATACCAGTTTCTGGATCGCTGAACTTATTTCAAAACAAGWATTTTTTAAAAACGGACTGATTAGTCTCCGGCAACCTACTCATGGTCTGAGTCACGGTCGCGATTTGCATAGACTAATTTCCACATTTGCCTCATCCAAAATAGACTACAGTCGCCATCATTATGTTATCATTTTAGTATGATACCGTAATCATCAAAGGGTGTGACTCAGTGGTCAGTGATCAATGATGTAGGAAATCTTTTAAACACATTACTGGCGGTTGTTTGACCATTACCTTATCTTCCTTAACTTCTGACCCATACCCCCCCCCCCCCCCCCATTCCAACTCATGATAAAGTGTTACTACACACCCATTCAGTCTGTAAAATGCGTTTTCTAATTTTGCTTACTCTGATTTTTAGTTTTTCGAATGCTCTCAATATTCTGTTCTATCAAGCAGTTATCGGACCATCCCATATAGCGTATTTGAGAACAACCATCAAGAAATTGTTGGATAGAGGACATACCGTTGTATGTTTTTTTTCTGAATTTATGTCAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>488 138 136 106 104 15 13</canonical_bands>
                <polymorphic_bands>592 138 136 106 15 13</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>263 138 107 106 104 89 76 42 34 15 13 13</canonical_bands>
                <polymorphic_bands>263 180 138 107 106 89 42 34 15 13 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGACAAATAAGAGTAATGACTTAGAA</pcr_primer_p1>
		<pcr_primer_p2>GTGGAAATTAGTCTATGCAAATC</pcr_primer_p2>
		<pcr_amplicon_size>275</pcr_amplicon_size>
		<canonical_amplicon>CGACAAATAAGAGTAATGACTTAGAAAGCATGGTGGCTGTGTGGCCATGGACTGGGAAATCCTCTTCCCTCCCGCACGATTAGAGAAATTTTCTTGACAGCAAAACTGTGCCACATCCGGCCGCAGCATTTTGGATAGTGGTCTAGCGGTCATACCAGTTTCTGGATCGCTGAACTTATTTCAAAACAAGAATTTTTTAAAAACGGACTGATTAGTCTCCGGCAACCTACTCATGGTCTGAGTCACGGTCGCGATTTGCATAGACTAATTTCCAC</canonical_amplicon>
		<polymorphic_amplicon>CGACAAATAAGAGTAATGACTTAGAAAGCATGGTGGCTGTGTGGCCATGGACTGGGAAATCCTCTTCCCTCCCGCACGATTAGAGAAATTTTCTTGACAGCAAAACTGTGCCACATCCGGCCGCAGCATTTTGGATAGTGGTCTAGCGGTCATACCAGTTTCTGGATCGCTGAACTTATTTCAAAACAAGWATTTTTTAAAAACGGACTGATTAGTCTCCGGCAACCTACTCATGGTCTGAGTCACGGTCGCGATTTGCATAGACTAATTTCCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39608</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>402976</contig_pos>
        <strand></strand>
        <context>ggtcgccatg[T/A]tttggggttc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGATTGGTCGAATGCGTAAAAAGTACTAAAAGGCCCTAAGGGTCGCCATG</left_flank>
        <right_flank>TTTGGGGTTCATGGCTAGGTGTTTTTCACTGAACGTCCCCCAGTAGCAAG</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGATTTTAATTTTCATTACTTTTATGGTGTTTCAGTTTTTCCTCAAACAAGTTTCAGCTTTCACTCGAAAAATTAAAACTGATTGAAGTTTTTTATGTCTTCACCGGTCTCTTTGCCGGGCCTCCTGCTGGCTGGGGCGCCTTTGGCGCGATGTAACCTGTTTGTTTTAGAAAAGGTCACGACAAGTTATATTTAATTTTCAAGCTATTCAATTTTCTTTAAATTTTTTGTTCATGTAACGCGATAATTCAATAAATCGTTCATTATTAGTCCATGTCCCCTCCTTCTGTCCACGTTGAAAAATTCCACATATTGCAAAAAAATCAGTTCTCTTTAAAATCAGATTCTTTGAACTTTATTGTTGGATAATTTTCACAAGACCTTCTCTCTGGTCAGAAGCCCTCTGTCTTACGCTGCTTCTTTTTGGTTCATTCTCTTTTTGATCTTTTGATTGGTCGAATGCGTAAAAAGTACTAAAAGGCCCTAAGGGTCGCCATGTTTTGGGGTTCATGGCTAGGTGTTTTTCACTGAACGTCCCCCAGTAGCAAGAGATTCAATCAAAAATCAGAAGAAATGAACAAATATCTATAGAAAGCGTACGCAAGGCTTCTTACAAGGGAAAAGGAACTTTGGAAATTATCCAACAATGGTCCTCGGAGACCATGGGCAATGGGACCCTTTCATGTACTGAGCCTCTACGTGGCGAAAGGGATCAACAGGCTAAAGTCTGGCCAATCAGTACACTTGTTATTTTTCATAAAAACCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCTGTCAAGACTCGTCTCAATGGGCTAACTTTGTTTTTTGATGAGCTTTTCATTTTTATGTGAATCTACATGACTTTCTGAGCAAAATAAAAATATAAAAATAATACCAGCTTTAATTTTAAAATTTTTTTTATTGGAAACCAATAAAACAACATTCTTAAAAAATCTGCTCAGTATTCAAAATTAGG</canonical>
            <polymorphic>ATGATTTTAATTTTCATTACTTTTATGGTGTTTCAGTTTTTCCTCAAACAAGTTTCAGCTTTCACTCGAAAAATTAAAACTGATTGAAGTTTTTTATGTCTTCACCGGTCTCTTTGCCGGGCCTCCTGCTGGCTGGGGCGCCTTTGGCGCGATGTAACCTGTTTGTTTTAGAAAAGGTCACGACAAGTTATATTTAATTTTCAAGCTATTCAATTTTCTTTAAATTTTTTGTTCATGTAACGCGATAATTCAATAAATCGTTCATTATTAGTCCATGTCCCCTCCTTCTGTCCACGTTGAAAAATTCCACATATTGCAAAAAAATCAGTTCTCTTTAAAATCAGATTCTTTGAACTTTATTGTTGGATAATTTTCACAAGACCTTCTCTCTGGTCAGAAGCCCTCTGTCTTACGCTGCTTCTTTTTGGTTCATTCTCTTTTTGATCTTTTGATTGGTCGAATGCGTAAAAAGTACTAAAAGGCCCTAAGGGTCGCCATGWTTTGGGGTTCATGGCTAGGTGTTTTTCACTGAACGTCCCCCAGTAGCAAGAGATTCAATCAAAAATCAGAAGAAATGAACAAATATCTATAGAAAGCGTACGCAAGGCTTCTTACAAGGGAAAAGGAACTTTGGAAATTATCCAACAATGGTCCTCGGAGACCATGGGCAATGGGACCCTTTCATGTACTGAGCCTCTACGTGGCGAAAGGGATCAACAGGCTAAAGTCTGGCCAATCAGTACACTTGTTATTTTTCATAAAAACCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCTGTCAAGACTCGTCTCAATGGGCTAACTTTGTTTTTTGATGAGCTTTTCATTTTTATGTGAATCTACATGACTTTCTGAGCAAAATAAAAATATAAAAATAATACCAGCTTTAATTTTAAAATTTTTTTTATTGGAAACCAATAAAACAACATTCTTAAAAAATCTGCTCAGTATTCAAAATTAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTCTTCACCGGTCTCTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGAATGTTGTTTTATTGGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>876</pcr_amplicon_size>
		<canonical_amplicon>ATGTCTTCACCGGTCTCTTTGCCGGGCCTCCTGCTGGCTGGGGCGCCTTTGGCGCGATGTAACCTGTTTGTTTTAGAAAAGGTCACGACAAGTTATATTTAATTTTCAAGCTATTCAATTTTCTTTAAATTTTTTGTTCATGTAACGCGATAATTCAATAAATCGTTCATTATTAGTCCATGTCCCCTCCTTCTGTCCACGTTGAAAAATTCCACATATTGCAAAAAAATCAGTTCTCTTTAAAATCAGATTCTTTGAACTTTATTGTTGGATAATTTTCACAAGACCTTCTCTCTGGTCAGAAGCCCTCTGTCTTACGCTGCTTCTTTTTGGTTCATTCTCTTTTTGATCTTTTGATTGGTCGAATGCGTAAAAAGTACTAAAAGGCCCTAAGGGTCGCCATGTTTTGGGGTTCATGGCTAGGTGTTTTTCACTGAACGTCCCCCAGTAGCAAGAGATTCAATCAAAAATCAGAAGAAATGAACAAATATCTATAGAAAGCGTACGCAAGGCTTCTTACAAGGGAAAAGGAACTTTGGAAATTATCCAACAATGGTCCTCGGAGACCATGGGCAATGGGACCCTTTCATGTACTGAGCCTCTACGTGGCGAAAGGGATCAACAGGCTAAAGTCTGGCCAATCAGTACACTTGTTATTTTTCATAAAAACCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCTGTCAAGACTCGTCTCAATGGGCTAACTTTGTTTTTTGATGAGCTTTTCATTTTTATGTGAATCTACATGACTTTCTGAGCAAAATAAAAATATAAAAATAATACCAGCTTTAATTTTAAAATTTTTTTTATTGGAAACCAATAAAACAACATTCTT</canonical_amplicon>
		<polymorphic_amplicon>ATGTCTTCACCGGTCTCTTTGCCGGGCCTCCTGCTGGCTGGGGCGCCTTTGGCGCGATGTAACCTGTTTGTTTTAGAAAAGGTCACGACAAGTTATATTTAATTTTCAAGCTATTCAATTTTCTTTAAATTTTTTGTTCATGTAACGCGATAATTCAATAAATCGTTCATTATTAGTCCATGTCCCCTCCTTCTGTCCACGTTGAAAAATTCCACATATTGCAAAAAAATCAGTTCTCTTTAAAATCAGATTCTTTGAACTTTATTGTTGGATAATTTTCACAAGACCTTCTCTCTGGTCAGAAGCCCTCTGTCTTACGCTGCTTCTTTTTGGTTCATTCTCTTTTTGATCTTTTGATTGGTCGAATGCGTAAAAAGTACTAAAAGGCCCTAAGGGTCGCCATGWTTTGGGGTTCATGGCTAGGTGTTTTTCACTGAACGTCCCCCAGTAGCAAGAGATTCAATCAAAAATCAGAAGAAATGAACAAATATCTATAGAAAGCGTACGCAAGGCTTCTTACAAGGGAAAAGGAACTTTGGAAATTATCCAACAATGGTCCTCGGAGACCATGGGCAATGGGACCCTTTCATGTACTGAGCCTCTACGTGGCGAAAGGGATCAACAGGCTAAAGTCTGGCCAATCAGTACACTTGTTATTTTTCATAAAAACCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCTGTCAAGACTCGTCTCAATGGGCTAACTTTGTTTTTTGATGAGCTTTTCATTTTTATGTGAATCTACATGACTTTCTGAGCAAAATAAAAATATAAAAATAATACCAGCTTTAATTTTAAAATTTTTTTTATTGGAAACCAATAAAACAACATTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39609</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>403040</contig_pos>
        <strand></strand>
        <context>ttcaatcaaa[A/G]atcagaagaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCTAGGTGTTTTTCACTGAACGTCCCCCAGTAGCAAGAGATTCAATCAAA</left_flank>
        <right_flank>ATCAGAAGAAATGAACAAATATCTATAGAAAGCGTACGCAAGGCTTCTTA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTCGAAAAATTAAAACTGATTGAAGTTTTTTATGTCTTCACCGGTCTCTTTGCCGGGCCTCCTGCTGGCTGGGGCGCCTTTGGCGCGATGTAACCTGTTTGTTTTAGAAAAGGTCACGACAAGTTATATTTAATTTTCAAGCTATTCAATTTTCTTTAAATTTTTTGTTCATGTAACGCGATAATTCAATAAATCGTTCATTATTAGTCCATGTCCCCTCCTTCTGTCCACGTTGAAAAATTCCACATATTGCAAAAAAATCAGTTCTCTTTAAAATCAGATTCTTTGAACTTTATTGTTGGATAATTTTCACAAGACCTTCTCTCTGGTCAGAAGCCCTCTGTCTTACGCTGCTTCTTTTTGGTTCATTCTCTTTTTGATCTTTTGATTGGTCGAATGCGTAAAAAGTACTAAAAGGCCCTAAGGGTCGCCATGTTTTGGGGTTCATGGCTAGGTGTTTTTCACTGAACGTCCCCCAGTAGCAAGAGATTCAATCAAAAATCAGAAGAAATGAACAAATATCTATAGAAAGCGTACGCAAGGCTTCTTACAAGGGAAAAGGAACTTTGGAAATTATCCAACAATGGTCCTCGGAGACCATGGGCAATGGGACCCTTTCATGTACTGAGCCTCTACGTGGCGAAAGGGATCAACAGGCTAAAGTCTGGCCAATCAGTACACTTGTTATTTTTCATAAAAACCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCTGTCAAGACTCGTCTCAATGGGCTAACTTTGTTTTTTGATGAGCTTTTCATTTTTATGTGAATCTACATGACTTTCTGAGCAAAATAAAAATATAAAAATAATACCAGCTTTAATTTTAAAATTTTTTTTATTGGAAACCAATAAAACAACATTCTTAAAAAATCTGCTCAGTATTCAAAATTAGGATAACTGATCTGTATCAATACCAAGTTCCCGTTTGCACTTAATATTATCGAAGTTCACAAAAAA</canonical>
            <polymorphic>CTCGAAAAATTAAAACTGATTGAAGTTTTTTATGTCTTCACCGGTCTCTTTGCCGGGCCTCCTGCTGGCTGGGGCGCCTTTGGCGCGATGTAACCTGTTTGTTTTAGAAAAGGTCACGACAAGTTATATTTAATTTTCAAGCTATTCAATTTTCTTTAAATTTTTTGTTCATGTAACGCGATAATTCAATAAATCGTTCATTATTAGTCCATGTCCCCTCCTTCTGTCCACGTTGAAAAATTCCACATATTGCAAAAAAATCAGTTCTCTTTAAAATCAGATTCTTTGAACTTTATTGTTGGATAATTTTCACAAGACCTTCTCTCTGGTCAGAAGCCCTCTGTCTTACGCTGCTTCTTTTTGGTTCATTCTCTTTTTGATCTTTTGATTGGTCGAATGCGTAAAAAGTACTAAAAGGCCCTAAGGGTCGCCATGTTTTGGGGTTCATGGCTAGGTGTTTTTCACTGAACGTCCCCCAGTAGCAAGAGATTCAATCAAARATCAGAAGAAATGAACAAATATCTATAGAAAGCGTACGCAAGGCTTCTTACAAGGGAAAAGGAACTTTGGAAATTATCCAACAATGGTCCTCGGAGACCATGGGCAATGGGACCCTTTCATGTACTGAGCCTCTACGTGGCGAAAGGGATCAACAGGCTAAAGTCTGGCCAATCAGTACACTTGTTATTTTTCATAAAAACCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCTGTCAAGACTCGTCTCAATGGGCTAACTTTGTTTTTTGATGAGCTTTTCATTTTTATGTGAATCTACATGACTTTCTGAGCAAAATAAAAATATAAAAATAATACCAGCTTTAATTTTAAAATTTTTTTTATTGGAAACCAATAAAACAACATTCTTAAAAAATCTGCTCAGTATTCAAAATTAGGATAACTGATCTGTATCAATACCAAGTTCCCGTTTGCACTTAATATTATCGAAGTTCACAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTCTTCACCGGTCTCTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGAATGTTGTTTTATTGGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>876</pcr_amplicon_size>
		<canonical_amplicon>ATGTCTTCACCGGTCTCTTTGCCGGGCCTCCTGCTGGCTGGGGCGCCTTTGGCGCGATGTAACCTGTTTGTTTTAGAAAAGGTCACGACAAGTTATATTTAATTTTCAAGCTATTCAATTTTCTTTAAATTTTTTGTTCATGTAACGCGATAATTCAATAAATCGTTCATTATTAGTCCATGTCCCCTCCTTCTGTCCACGTTGAAAAATTCCACATATTGCAAAAAAATCAGTTCTCTTTAAAATCAGATTCTTTGAACTTTATTGTTGGATAATTTTCACAAGACCTTCTCTCTGGTCAGAAGCCCTCTGTCTTACGCTGCTTCTTTTTGGTTCATTCTCTTTTTGATCTTTTGATTGGTCGAATGCGTAAAAAGTACTAAAAGGCCCTAAGGGTCGCCATGTTTTGGGGTTCATGGCTAGGTGTTTTTCACTGAACGTCCCCCAGTAGCAAGAGATTCAATCAAAAATCAGAAGAAATGAACAAATATCTATAGAAAGCGTACGCAAGGCTTCTTACAAGGGAAAAGGAACTTTGGAAATTATCCAACAATGGTCCTCGGAGACCATGGGCAATGGGACCCTTTCATGTACTGAGCCTCTACGTGGCGAAAGGGATCAACAGGCTAAAGTCTGGCCAATCAGTACACTTGTTATTTTTCATAAAAACCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCTGTCAAGACTCGTCTCAATGGGCTAACTTTGTTTTTTGATGAGCTTTTCATTTTTATGTGAATCTACATGACTTTCTGAGCAAAATAAAAATATAAAAATAATACCAGCTTTAATTTTAAAATTTTTTTTATTGGAAACCAATAAAACAACATTCTT</canonical_amplicon>
		<polymorphic_amplicon>ATGTCTTCACCGGTCTCTTTGCCGGGCCTCCTGCTGGCTGGGGCGCCTTTGGCGCGATGTAACCTGTTTGTTTTAGAAAAGGTCACGACAAGTTATATTTAATTTTCAAGCTATTCAATTTTCTTTAAATTTTTTGTTCATGTAACGCGATAATTCAATAAATCGTTCATTATTAGTCCATGTCCCCTCCTTCTGTCCACGTTGAAAAATTCCACATATTGCAAAAAAATCAGTTCTCTTTAAAATCAGATTCTTTGAACTTTATTGTTGGATAATTTTCACAAGACCTTCTCTCTGGTCAGAAGCCCTCTGTCTTACGCTGCTTCTTTTTGGTTCATTCTCTTTTTGATCTTTTGATTGGTCGAATGCGTAAAAAGTACTAAAAGGCCCTAAGGGTCGCCATGTTTTGGGGTTCATGGCTAGGTGTTTTTCACTGAACGTCCCCCAGTAGCAAGAGATTCAATCAAARATCAGAAGAAATGAACAAATATCTATAGAAAGCGTACGCAAGGCTTCTTACAAGGGAAAAGGAACTTTGGAAATTATCCAACAATGGTCCTCGGAGACCATGGGCAATGGGACCCTTTCATGTACTGAGCCTCTACGTGGCGAAAGGGATCAACAGGCTAAAGTCTGGCCAATCAGTACACTTGTTATTTTTCATAAAAACCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCTGTCAAGACTCGTCTCAATGGGCTAACTTTGTTTTTTGATGAGCTTTTCATTTTTATGTGAATCTACATGACTTTCTGAGCAAAATAAAAATATAAAAATAATACCAGCTTTAATTTTAAAATTTTTTTTATTGGAAACCAATAAAACAACATTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39610</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>403146</contig_pos>
        <strand></strand>
        <context>gaccatgggc[A/G]rkgggaccct</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAAAAGGAACTTTGGAAATTATCCAACAATGGTCCTCGGAGACCATGGGC</left_flank>
        <right_flank>ATGGGACCCTTTCATGTACTGAGCCTCTACGTGGCGAAAGGGATCAACAG</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAAAGGTCACGACAAGTTATATTTAATTTTCAAGCTATTCAATTTTCTTTAAATTTTTTGTTCATGTAACGCGATAATTCAATAAATCGTTCATTATTAGTCCATGTCCCCTCCTTCTGTCCACGTTGAAAAATTCCACATATTGCAAAAAAATCAGTTCTCTTTAAAATCAGATTCTTTGAACTTTATTGTTGGATAATTTTCACAAGACCTTCTCTCTGGTCAGAAGCCCTCTGTCTTACGCTGCTTCTTTTTGGTTCATTCTCTTTTTGATCTTTTGATTGGTCGAATGCGTAAAAAGTACTAAAAGGCCCTAAGGGTCGCCATGTTTTGGGGTTCATGGCTAGGTGTTTTTCACTGAACGTCCCCCAGTAGCAAGAGATTCAATCAAAAATCAGAAGAAATGAACAAATATCTATAGAAAGCGTACGCAAGGCTTCTTACAAGGGAAAAGGAACTTTGGAAATTATCCAACAATGGTCCTCGGAGACCATGGGCAATGGGACCCTTTCATGTACTGAGCCTCTACGTGGCGAAAGGGATCAACAGGCTAAAGTCTGGCCAATCAGTACACTTGTTATTTTTCATAAAAACCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCTGTCAAGACTCGTCTCAATGGGCTAACTTTGTTTTTTGATGAGCTTTTCATTTTTATGTGAATCTACATGACTTTCTGAGCAAAATAAAAATATAAAAATAATACCAGCTTTAATTTTAAAATTTTTTTTATTGGAAACCAATAAAACAACATTCTTAAAAAATCTGCTCAGTATTCAAAATTAGGATAACTGATCTGTATCAATACCAAGTTCCCGTTTGCACTTAATATTATCGAAGTTCACAAAAAACATATTGATATGGTCTCCGGTCTGATCGATTAATACAGCATATCTTTTGTCGTATACCGTATCCATCAAAATGTGTTTTGCTGTTTCCATTTCGTCTATCTGAAAA</canonical>
            <polymorphic>GAAAAGGTCACGACAAGTTATATTTAATTTTCAAGCTATTCAATTTTCTTTAAATTTTTTGTTCATGTAACGCGATAATTCAATAAATCGTTCATTATTAGTCCATGTCCCCTCCTTCTGTCCACGTTGAAAAATTCCACATATTGCAAAAAAATCAGTTCTCTTTAAAATCAGATTCTTTGAACTTTATTGTTGGATAATTTTCACAAGACCTTCTCTCTGGTCAGAAGCCCTCTGTCTTACGCTGCTTCTTTTTGGTTCATTCTCTTTTTGATCTTTTGATTGGTCGAATGCGTAAAAAGTACTAAAAGGCCCTAAGGGTCGCCATGTTTTGGGGTTCATGGCTAGGTGTTTTTCACTGAACGTCCCCCAGTAGCAAGAGATTCAATCAAAAATCAGAAGAAATGAACAAATATCTATAGAAAGCGTACGCAAGGCTTCTTACAAGGGAAAAGGAACTTTGGAAATTATCCAACAATGGTCCTCGGAGACCATGGGCRATGGGACCCTTTCATGTACTGAGCCTCTACGTGGCGAAAGGGATCAACAGGCTAAAGTCTGGCCAATCAGTACACTTGTTATTTTTCATAAAAACCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCTGTCAAGACTCGTCTCAATGGGCTAACTTTGTTTTTTGATGAGCTTTTCATTTTTATGTGAATCTACATGACTTTCTGAGCAAAATAAAAATATAAAAATAATACCAGCTTTAATTTTAAAATTTTTTTTATTGGAAACCAATAAAACAACATTCTTAAAAAATCTGCTCAGTATTCAAAATTAGGATAACTGATCTGTATCAATACCAAGTTCCCGTTTGCACTTAATATTATCGAAGTTCACAAAAAACATATTGATATGGTCTCCGGTCTGATCGATTAATACAGCATATCTTTTGTCGTATACCGTATCCATCAAAATGTGTTTTGCTGTTTCCATTTCGTCTATCTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTCTTCACCGGTCTCTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGAATGTTGTTTTATTGGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>876</pcr_amplicon_size>
		<canonical_amplicon>CAATGGGACCCTTTCATGTACTGAGCCTCTACGTGGCGAAAGGGATCAACAGGCTAAAGTCTGGCCAATCAGTACACTTGTTATTTTTCATAAAAACCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCTGTCAAGACTCGTCTCAATGGGCTAACTTTGTTTTTTGATGAGCTTTTCATTTTTATGTGAATCTACATGACTTTCTGAGCAAAATAAAAATATAAAAATAATACCAGCTTTAATTTTAAAATTTTTTTTATTGGAAACCAATAAAACAACATTCTT</canonical_amplicon>
		<polymorphic_amplicon>CRATGGGACCCTTTCATGTACTGAGCCTCTACGTGGCGAAAGGGATCAACAGGCTAAAGTCTGGCCAATCAGTACACTTGTTATTTTTCATAAAAACCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCTGTCAAGACTCGTCTCAATGGGCTAACTTTGTTTTTTGATGAGCTTTTCATTTTTATGTGAATCTACATGACTTTCTGAGCAAAATAAAAATATAAAAATAATACCAGCTTTAATTTTAAAATTTTTTTTATTGGAAACCAATAAAACAACATTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39611</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>403147</contig_pos>
        <strand></strand>
        <context>accatgggcr[A/G]kgggaccctt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAGGAACTTTGGAAATTATCCAACAATGGTCCTCGGAGACCATGGGCA</left_flank>
        <right_flank>TGGGACCCTTTCATGTACTGAGCCTCTACGTGGCGAAAGGGATCAACAGG</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGGTCACGACAAGTTATATTTAATTTTCAAGCTATTCAATTTTCTTTAAATTTTTTGTTCATGTAACGCGATAATTCAATAAATCGTTCATTATTAGTCCATGTCCCCTCCTTCTGTCCACGTTGAAAAATTCCACATATTGCAAAAAAATCAGTTCTCTTTAAAATCAGATTCTTTGAACTTTATTGTTGGATAATTTTCACAAGACCTTCTCTCTGGTCAGAAGCCCTCTGTCTTACGCTGCTTCTTTTTGGTTCATTCTCTTTTTGATCTTTTGATTGGTCGAATGCGTAAAAAGTACTAAAAGGCCCTAAGGGTCGCCATGTTTTGGGGTTCATGGCTAGGTGTTTTTCACTGAACGTCCCCCAGTAGCAAGAGATTCAATCAAAAATCAGAAGAAATGAACAAATATCTATAGAAAGCGTACGCAAGGCTTCTTACAAGGGAAAAGGAACTTTGGAAATTATCCAACAATGGTCCTCGGAGACCATGGGCAATGGGACCCTTTCATGTACTGAGCCTCTACGTGGCGAAAGGGATCAACAGGCTAAAGTCTGGCCAATCAGTACACTTGTTATTTTTCATAAAAACCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCTGTCAAGACTCGTCTCAATGGGCTAACTTTGTTTTTTGATGAGCTTTTCATTTTTATGTGAATCTACATGACTTTCTGAGCAAAATAAAAATATAAAAATAATACCAGCTTTAATTTTAAAATTTTTTTTATTGGAAACCAATAAAACAACATTCTTAAAAAATCTGCTCAGTATTCAAAATTAGGATAACTGATCTGTATCAATACCAAGTTCCCGTTTGCACTTAATATTATCGAAGTTCACAAAAAACATATTGATATGGTCTCCGGTCTGATCGATTAATACAGCATATCTTTTGTCGTATACCGTATCCATCAAAATGTGTTTTGCTGTTTCCATTTCGTCTATCTGAAAAT</canonical>
            <polymorphic>AAAAGGTCACGACAAGTTATATTTAATTTTCAAGCTATTCAATTTTCTTTAAATTTTTTGTTCATGTAACGCGATAATTCAATAAATCGTTCATTATTAGTCCATGTCCCCTCCTTCTGTCCACGTTGAAAAATTCCACATATTGCAAAAAAATCAGTTCTCTTTAAAATCAGATTCTTTGAACTTTATTGTTGGATAATTTTCACAAGACCTTCTCTCTGGTCAGAAGCCCTCTGTCTTACGCTGCTTCTTTTTGGTTCATTCTCTTTTTGATCTTTTGATTGGTCGAATGCGTAAAAAGTACTAAAAGGCCCTAAGGGTCGCCATGTTTTGGGGTTCATGGCTAGGTGTTTTTCACTGAACGTCCCCCAGTAGCAAGAGATTCAATCAAAAATCAGAAGAAATGAACAAATATCTATAGAAAGCGTACGCAAGGCTTCTTACAAGGGAAAAGGAACTTTGGAAATTATCCAACAATGGTCCTCGGAGACCATGGGCARTGGGACCCTTTCATGTACTGAGCCTCTACGTGGCGAAAGGGATCAACAGGCTAAAGTCTGGCCAATCAGTACACTTGTTATTTTTCATAAAAACCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCTGTCAAGACTCGTCTCAATGGGCTAACTTTGTTTTTTGATGAGCTTTTCATTTTTATGTGAATCTACATGACTTTCTGAGCAAAATAAAAATATAAAAATAATACCAGCTTTAATTTTAAAATTTTTTTTATTGGAAACCAATAAAACAACATTCTTAAAAAATCTGCTCAGTATTCAAAATTAGGATAACTGATCTGTATCAATACCAAGTTCCCGTTTGCACTTAATATTATCGAAGTTCACAAAAAACATATTGATATGGTCTCCGGTCTGATCGATTAATACAGCATATCTTTTGTCGTATACCGTATCCATCAAAATGTGTTTTGCTGTTTCCATTTCGTCTATCTGAAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTCTTCACCGGTCTCTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGAATGTTGTTTTATTGGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>876</pcr_amplicon_size>
		<canonical_amplicon>AATGGGACCCTTTCATGTACTGAGCCTCTACGTGGCGAAAGGGATCAACAGGCTAAAGTCTGGCCAATCAGTACACTTGTTATTTTTCATAAAAACCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCTGTCAAGACTCGTCTCAATGGGCTAACTTTGTTTTTTGATGAGCTTTTCATTTTTATGTGAATCTACATGACTTTCTGAGCAAAATAAAAATATAAAAATAATACCAGCTTTAATTTTAAAATTTTTTTTATTGGAAACCAATAAAACAACATTCTT</canonical_amplicon>
		<polymorphic_amplicon>ARTGGGACCCTTTCATGTACTGAGCCTCTACGTGGCGAAAGGGATCAACAGGCTAAAGTCTGGCCAATCAGTACACTTGTTATTTTTCATAAAAACCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCTGTCAAGACTCGTCTCAATGGGCTAACTTTGTTTTTTGATGAGCTTTTCATTTTTATGTGAATCTACATGACTTTCTGAGCAAAATAAAAATATAAAAATAATACCAGCTTTAATTTTAAAATTTTTTTTATTGGAAACCAATAAAACAACATTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39612</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>403148</contig_pos>
        <strand></strand>
        <context>ccatgggcrr[T/G]gggacccttt</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AAAGGAACTTTGGAAATTATCCAACAATGGTCCTCGGAGACCATGGGCAA</left_flank>
        <right_flank>GGGACCCTTTCATGTACTGAGCCTCTACGTGGCGAAAGGGATCAACAGGC</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGGTCACGACAAGTTATATTTAATTTTCAAGCTATTCAATTTTCTTTAAATTTTTTGTTCATGTAACGCGATAATTCAATAAATCGTTCATTATTAGTCCATGTCCCCTCCTTCTGTCCACGTTGAAAAATTCCACATATTGCAAAAAAATCAGTTCTCTTTAAAATCAGATTCTTTGAACTTTATTGTTGGATAATTTTCACAAGACCTTCTCTCTGGTCAGAAGCCCTCTGTCTTACGCTGCTTCTTTTTGGTTCATTCTCTTTTTGATCTTTTGATTGGTCGAATGCGTAAAAAGTACTAAAAGGCCCTAAGGGTCGCCATGTTTTGGGGTTCATGGCTAGGTGTTTTTCACTGAACGTCCCCCAGTAGCAAGAGATTCAATCAAAAATCAGAAGAAATGAACAAATATCTATAGAAAGCGTACGCAAGGCTTCTTACAAGGGAAAAGGAACTTTGGAAATTATCCAACAATGGTCCTCGGAGACCATGGGCAATGGGACCCTTTCATGTACTGAGCCTCTACGTGGCGAAAGGGATCAACAGGCTAAAGTCTGGCCAATCAGTACACTTGTTATTTTTCATAAAAACCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCTGTCAAGACTCGTCTCAATGGGCTAACTTTGTTTTTTGATGAGCTTTTCATTTTTATGTGAATCTACATGACTTTCTGAGCAAAATAAAAATATAAAAATAATACCAGCTTTAATTTTAAAATTTTTTTTATTGGAAACCAATAAAACAACATTCTTAAAAAATCTGCTCAGTATTCAAAATTAGGATAACTGATCTGTATCAATACCAAGTTCCCGTTTGCACTTAATATTATCGAAGTTCACAAAAAACATATTGATATGGTCTCCGGTCTGATCGATTAATACAGCATATCTTTTGTCGTATACCGTATCCATCAAAATGTGTTTTGCTGTTTCCATTTCGTCTATCTGAAAATC</canonical>
            <polymorphic>AAAGGTCACGACAAGTTATATTTAATTTTCAAGCTATTCAATTTTCTTTAAATTTTTTGTTCATGTAACGCGATAATTCAATAAATCGTTCATTATTAGTCCATGTCCCCTCCTTCTGTCCACGTTGAAAAATTCCACATATTGCAAAAAAATCAGTTCTCTTTAAAATCAGATTCTTTGAACTTTATTGTTGGATAATTTTCACAAGACCTTCTCTCTGGTCAGAAGCCCTCTGTCTTACGCTGCTTCTTTTTGGTTCATTCTCTTTTTGATCTTTTGATTGGTCGAATGCGTAAAAAGTACTAAAAGGCCCTAAGGGTCGCCATGTTTTGGGGTTCATGGCTAGGTGTTTTTCACTGAACGTCCCCCAGTAGCAAGAGATTCAATCAAAAATCAGAAGAAATGAACAAATATCTATAGAAAGCGTACGCAAGGCTTCTTACAAGGGAAAAGGAACTTTGGAAATTATCCAACAATGGTCCTCGGAGACCATGGGCAAKGGGACCCTTTCATGTACTGAGCCTCTACGTGGCGAAAGGGATCAACAGGCTAAAGTCTGGCCAATCAGTACACTTGTTATTTTTCATAAAAACCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCTGTCAAGACTCGTCTCAATGGGCTAACTTTGTTTTTTGATGAGCTTTTCATTTTTATGTGAATCTACATGACTTTCTGAGCAAAATAAAAATATAAAAATAATACCAGCTTTAATTTTAAAATTTTTTTTATTGGAAACCAATAAAACAACATTCTTAAAAAATCTGCTCAGTATTCAAAATTAGGATAACTGATCTGTATCAATACCAAGTTCCCGTTTGCACTTAATATTATCGAAGTTCACAAAAAACATATTGATATGGTCTCCGGTCTGATCGATTAATACAGCATATCTTTTGTCGTATACCGTATCCATCAAAATGTGTTTTGCTGTTTCCATTTCGTCTATCTGAAAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTCTTCACCGGTCTCTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGAATGTTGTTTTATTGGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>876</pcr_amplicon_size>
		<canonical_amplicon>ATGGGACCCTTTCATGTACTGAGCCTCTACGTGGCGAAAGGGATCAACAGGCTAAAGTCTGGCCAATCAGTACACTTGTTATTTTTCATAAAAACCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCTGTCAAGACTCGTCTCAATGGGCTAACTTTGTTTTTTGATGAGCTTTTCATTTTTATGTGAATCTACATGACTTTCTGAGCAAAATAAAAATATAAAAATAATACCAGCTTTAATTTTAAAATTTTTTTTATTGGAAACCAATAAAACAACATTCTT</canonical_amplicon>
		<polymorphic_amplicon>AKGGGACCCTTTCATGTACTGAGCCTCTACGTGGCGAAAGGGATCAACAGGCTAAAGTCTGGCCAATCAGTACACTTGTTATTTTTCATAAAAACCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCTGTCAAGACTCGTCTCAATGGGCTAACTTTGTTTTTTGATGAGCTTTTCATTTTTATGTGAATCTACATGACTTTCTGAGCAAAATAAAAATATAAAAATAATACCAGCTTTAATTTTAAAATTTTTTTTATTGGAAACCAATAAAACAACATTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39613</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>403204</contig_pos>
        <strand></strand>
        <context>caggctaaag[T/C]ctggccaatc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCTTTCATGTACTGAGCCTCTACGTGGCGAAAGGGATCAACAGGCTAAAG</left_flank>
        <right_flank>CTGGCCAATCAGTACACTTGTTATTTTTCATAAAAACCGTGTTTTTTCAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTCATGTAACGCGATAATTCAATAAATCGTTCATTATTAGTCCATGTCCCCTCCTTCTGTCCACGTTGAAAAATTCCACATATTGCAAAAAAATCAGTTCTCTTTAAAATCAGATTCTTTGAACTTTATTGTTGGATAATTTTCACAAGACCTTCTCTCTGGTCAGAAGCCCTCTGTCTTACGCTGCTTCTTTTTGGTTCATTCTCTTTTTGATCTTTTGATTGGTCGAATGCGTAAAAAGTACTAAAAGGCCCTAAGGGTCGCCATGTTTTGGGGTTCATGGCTAGGTGTTTTTCACTGAACGTCCCCCAGTAGCAAGAGATTCAATCAAAAATCAGAAGAAATGAACAAATATCTATAGAAAGCGTACGCAAGGCTTCTTACAAGGGAAAAGGAACTTTGGAAATTATCCAACAATGGTCCTCGGAGACCATGGGCAATGGGACCCTTTCATGTACTGAGCCTCTACGTGGCGAAAGGGATCAACAGGCTAAAGTCTGGCCAATCAGTACACTTGTTATTTTTCATAAAAACCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCTGTCAAGACTCGTCTCAATGGGCTAACTTTGTTTTTTGATGAGCTTTTCATTTTTATGTGAATCTACATGACTTTCTGAGCAAAATAAAAATATAAAAATAATACCAGCTTTAATTTTAAAATTTTTTTTATTGGAAACCAATAAAACAACATTCTTAAAAAATCTGCTCAGTATTCAAAATTAGGATAACTGATCTGTATCAATACCAAGTTCCCGTTTGCACTTAATATTATCGAAGTTCACAAAAAACATATTGATATGGTCTCCGGTCTGATCGATTAATACAGCATATCTTTTGTCGTATACCGTATCCATCAAAATGTGTTTTGCTGTTTCCATTTCGTCTATCTGAAAATCAAAATCAACATTTGATTTCTGAAAAAGGGGTTGTTGATACTTGAAAGTTGATTTGA</canonical>
            <polymorphic>TTGTTCATGTAACGCGATAATTCAATAAATCGTTCATTATTAGTCCATGTCCCCTCCTTCTGTCCACGTTGAAAAATTCCACATATTGCAAAAAAATCAGTTCTCTTTAAAATCAGATTCTTTGAACTTTATTGTTGGATAATTTTCACAAGACCTTCTCTCTGGTCAGAAGCCCTCTGTCTTACGCTGCTTCTTTTTGGTTCATTCTCTTTTTGATCTTTTGATTGGTCGAATGCGTAAAAAGTACTAAAAGGCCCTAAGGGTCGCCATGTTTTGGGGTTCATGGCTAGGTGTTTTTCACTGAACGTCCCCCAGTAGCAAGAGATTCAATCAAAAATCAGAAGAAATGAACAAATATCTATAGAAAGCGTACGCAAGGCTTCTTACAAGGGAAAAGGAACTTTGGAAATTATCCAACAATGGTCCTCGGAGACCATGGGCAATGGGACCCTTTCATGTACTGAGCCTCTACGTGGCGAAAGGGATCAACAGGCTAAAGYCTGGCCAATCAGTACACTTGTTATTTTTCATAAAAACCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCTGTCAAGACTCGTCTCAATGGGCTAACTTTGTTTTTTGATGAGCTTTTCATTTTTATGTGAATCTACATGACTTTCTGAGCAAAATAAAAATATAAAAATAATACCAGCTTTAATTTTAAAATTTTTTTTATTGGAAACCAATAAAACAACATTCTTAAAAAATCTGCTCAGTATTCAAAATTAGGATAACTGATCTGTATCAATACCAAGTTCCCGTTTGCACTTAATATTATCGAAGTTCACAAAAAACATATTGATATGGTCTCCGGTCTGATCGATTAATACAGCATATCTTTTGTCGTATACCGTATCCATCAAAATGTGTTTTGCTGTTTCCATTTCGTCTATCTGAAAATCAAAATCAACATTTGATTTCTGAAAAAGGGGTTGTTGATACTTGAAAGTTGATTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTCTTCACCGGTCTCTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGAATGTTGTTTTATTGGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>876</pcr_amplicon_size>
		<canonical_amplicon>GTCTGGCCAATCAGTACACTTGTTATTTTTCATAAAAACCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCTGTCAAGACTCGTCTCAATGGGCTAACTTTGTTTTTTGATGAGCTTTTCATTTTTATGTGAATCTACATGACTTTCTGAGCAAAATAAAAATATAAAAATAATACCAGCTTTAATTTTAAAATTTTTTTTATTGGAAACCAATAAAACAACATTCTT</canonical_amplicon>
		<polymorphic_amplicon>GYCTGGCCAATCAGTACACTTGTTATTTTTCATAAAAACCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCTGTCAAGACTCGTCTCAATGGGCTAACTTTGTTTTTTGATGAGCTTTTCATTTTTATGTGAATCTACATGACTTTCTGAGCAAAATAAAAATATAAAAATAATACCAGCTTTAATTTTAAAATTTTTTTTATTGGAAACCAATAAAACAACATTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39614</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>403227</contig_pos>
        <strand></strand>
        <context>tacacttgtt[A/C]tttttcataa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTGGCGAAAGGGATCAACAGGCTAAAGTCTGGCCAATCAGTACACTTGTT</left_flank>
        <right_flank>TTTTTCATAAAAACCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATAAATCGTTCATTATTAGTCCATGTCCCCTCCTTCTGTCCACGTTGAAAAATTCCACATATTGCAAAAAAATCAGTTCTCTTTAAAATCAGATTCTTTGAACTTTATTGTTGGATAATTTTCACAAGACCTTCTCTCTGGTCAGAAGCCCTCTGTCTTACGCTGCTTCTTTTTGGTTCATTCTCTTTTTGATCTTTTGATTGGTCGAATGCGTAAAAAGTACTAAAAGGCCCTAAGGGTCGCCATGTTTTGGGGTTCATGGCTAGGTGTTTTTCACTGAACGTCCCCCAGTAGCAAGAGATTCAATCAAAAATCAGAAGAAATGAACAAATATCTATAGAAAGCGTACGCAAGGCTTCTTACAAGGGAAAAGGAACTTTGGAAATTATCCAACAATGGTCCTCGGAGACCATGGGCAATGGGACCCTTTCATGTACTGAGCCTCTACGTGGCGAAAGGGATCAACAGGCTAAAGTCTGGCCAATCAGTACACTTGTTATTTTTCATAAAAACCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCTGTCAAGACTCGTCTCAATGGGCTAACTTTGTTTTTTGATGAGCTTTTCATTTTTATGTGAATCTACATGACTTTCTGAGCAAAATAAAAATATAAAAATAATACCAGCTTTAATTTTAAAATTTTTTTTATTGGAAACCAATAAAACAACATTCTTAAAAAATCTGCTCAGTATTCAAAATTAGGATAACTGATCTGTATCAATACCAAGTTCCCGTTTGCACTTAATATTATCGAAGTTCACAAAAAACATATTGATATGGTCTCCGGTCTGATCGATTAATACAGCATATCTTTTGTCGTATACCGTATCCATCAAAATGTGTTTTGCTGTTTCCATTTCGTCTATCTGAAAATCAAAATCAACATTTGATTTCTGAAAAAGGGGTTGTTGATACTTGAAAGTTGATTTGACACACTGTTATTCCATTTTTCTC</canonical>
            <polymorphic>AATAAATCGTTCATTATTAGTCCATGTCCCCTCCTTCTGTCCACGTTGAAAAATTCCACATATTGCAAAAAAATCAGTTCTCTTTAAAATCAGATTCTTTGAACTTTATTGTTGGATAATTTTCACAAGACCTTCTCTCTGGTCAGAAGCCCTCTGTCTTACGCTGCTTCTTTTTGGTTCATTCTCTTTTTGATCTTTTGATTGGTCGAATGCGTAAAAAGTACTAAAAGGCCCTAAGGGTCGCCATGTTTTGGGGTTCATGGCTAGGTGTTTTTCACTGAACGTCCCCCAGTAGCAAGAGATTCAATCAAAAATCAGAAGAAATGAACAAATATCTATAGAAAGCGTACGCAAGGCTTCTTACAAGGGAAAAGGAACTTTGGAAATTATCCAACAATGGTCCTCGGAGACCATGGGCAATGGGACCCTTTCATGTACTGAGCCTCTACGTGGCGAAAGGGATCAACAGGCTAAAGTCTGGCCAATCAGTACACTTGTTMTTTTTCATAAAAACCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCTGTCAAGACTCGTCTCAATGGGCTAACTTTGTTTTTTGATGAGCTTTTCATTTTTATGTGAATCTACATGACTTTCTGAGCAAAATAAAAATATAAAAATAATACCAGCTTTAATTTTAAAATTTTTTTTATTGGAAACCAATAAAACAACATTCTTAAAAAATCTGCTCAGTATTCAAAATTAGGATAACTGATCTGTATCAATACCAAGTTCCCGTTTGCACTTAATATTATCGAAGTTCACAAAAAACATATTGATATGGTCTCCGGTCTGATCGATTAATACAGCATATCTTTTGTCGTATACCGTATCCATCAAAATGTGTTTTGCTGTTTCCATTTCGTCTATCTGAAAATCAAAATCAACATTTGATTTCTGAAAAAGGGGTTGTTGATACTTGAAAGTTGATTTGACACACTGTTATTCCATTTTTCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTCTTCACCGGTCTCTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGAATGTTGTTTTATTGGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>876</pcr_amplicon_size>
		<canonical_amplicon>TATTTTTCATAAAAACCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCTGTCAAGACTCGTCTCAATGGGCTAACTTTGTTTTTTGATGAGCTTTTCATTTTTATGTGAATCTACATGACTTTCTGAGCAAAATAAAAATATAAAAATAATACCAGCTTTAATTTTAAAATTTTTTTTATTGGAAACCAATAAAACAACATTCTT</canonical_amplicon>
		<polymorphic_amplicon>TMTTTTTCATAAAAACCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCTGTCAAGACTCGTCTCAATGGGCTAACTTTGTTTTTTGATGAGCTTTTCATTTTTATGTGAATCTACATGACTTTCTGAGCAAAATAAAAATATAAAAATAATACCAGCTTTAATTTTAAAATTTTTTTTATTGGAAACCAATAAAACAACATTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39615</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>403241</contig_pos>
        <strand></strand>
        <context>ttcataaaaa[C/T]cgtgtttttt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAACAGGCTAAAGTCTGGCCAATCAGTACACTTGTTATTTTTCATAAAAA</left_flank>
        <right_flank>CGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCT</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATTAGTCCATGTCCCCTCCTTCTGTCCACGTTGAAAAATTCCACATATTGCAAAAAAATCAGTTCTCTTTAAAATCAGATTCTTTGAACTTTATTGTTGGATAATTTTCACAAGACCTTCTCTCTGGTCAGAAGCCCTCTGTCTTACGCTGCTTCTTTTTGGTTCATTCTCTTTTTGATCTTTTGATTGGTCGAATGCGTAAAAAGTACTAAAAGGCCCTAAGGGTCGCCATGTTTTGGGGTTCATGGCTAGGTGTTTTTCACTGAACGTCCCCCAGTAGCAAGAGATTCAATCAAAAATCAGAAGAAATGAACAAATATCTATAGAAAGCGTACGCAAGGCTTCTTACAAGGGAAAAGGAACTTTGGAAATTATCCAACAATGGTCCTCGGAGACCATGGGCAATGGGACCCTTTCATGTACTGAGCCTCTACGTGGCGAAAGGGATCAACAGGCTAAAGTCTGGCCAATCAGTACACTTGTTATTTTTCATAAAAACCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCTGTCAAGACTCGTCTCAATGGGCTAACTTTGTTTTTTGATGAGCTTTTCATTTTTATGTGAATCTACATGACTTTCTGAGCAAAATAAAAATATAAAAATAATACCAGCTTTAATTTTAAAATTTTTTTTATTGGAAACCAATAAAACAACATTCTTAAAAAATCTGCTCAGTATTCAAAATTAGGATAACTGATCTGTATCAATACCAAGTTCCCGTTTGCACTTAATATTATCGAAGTTCACAAAAAACATATTGATATGGTCTCCGGTCTGATCGATTAATACAGCATATCTTTTGTCGTATACCGTATCCATCAAAATGTGTTTTGCTGTTTCCATTTCGTCTATCTGAAAATCAAAATCAACATTTGATTTCTGAAAAAGGGGTTGTTGATACTTGAAAGTTGATTTGACACACTGTTATTCCATTTTTCTCAAACGCTCCGTTCG</canonical>
            <polymorphic>TATTAGTCCATGTCCCCTCCTTCTGTCCACGTTGAAAAATTCCACATATTGCAAAAAAATCAGTTCTCTTTAAAATCAGATTCTTTGAACTTTATTGTTGGATAATTTTCACAAGACCTTCTCTCTGGTCAGAAGCCCTCTGTCTTACGCTGCTTCTTTTTGGTTCATTCTCTTTTTGATCTTTTGATTGGTCGAATGCGTAAAAAGTACTAAAAGGCCCTAAGGGTCGCCATGTTTTGGGGTTCATGGCTAGGTGTTTTTCACTGAACGTCCCCCAGTAGCAAGAGATTCAATCAAAAATCAGAAGAAATGAACAAATATCTATAGAAAGCGTACGCAAGGCTTCTTACAAGGGAAAAGGAACTTTGGAAATTATCCAACAATGGTCCTCGGAGACCATGGGCAATGGGACCCTTTCATGTACTGAGCCTCTACGTGGCGAAAGGGATCAACAGGCTAAAGTCTGGCCAATCAGTACACTTGTTATTTTTCATAAAAAYCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCTGTCAAGACTCGTCTCAATGGGCTAACTTTGTTTTTTGATGAGCTTTTCATTTTTATGTGAATCTACATGACTTTCTGAGCAAAATAAAAATATAAAAATAATACCAGCTTTAATTTTAAAATTTTTTTTATTGGAAACCAATAAAACAACATTCTTAAAAAATCTGCTCAGTATTCAAAATTAGGATAACTGATCTGTATCAATACCAAGTTCCCGTTTGCACTTAATATTATCGAAGTTCACAAAAAACATATTGATATGGTCTCCGGTCTGATCGATTAATACAGCATATCTTTTGTCGTATACCGTATCCATCAAAATGTGTTTTGCTGTTTCCATTTCGTCTATCTGAAAATCAAAATCAACATTTGATTTCTGAAAAAGGGGTTGTTGATACTTGAAAGTTGATTTGACACACTGTTATTCCATTTTTCTCAAACGCTCCGTTCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 356 112 31</canonical_bands>
                <polymorphic_bands>857 112 31</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATGTCTTCACCGGTCTCTTT</pcr_primer_p1>
		<pcr_primer_p2>AAGAATGTTGTTTTATTGGTTTC</pcr_primer_p2>
		<pcr_amplicon_size>876</pcr_amplicon_size>
		<canonical_amplicon>ACCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCTGTCAAGACTCGTCTCAATGGGCTAACTTTGTTTTTTGATGAGCTTTTCATTTTTATGTGAATCTACATGACTTTCTGAGCAAAATAAAAATATAAAAATAATACCAGCTTTAATTTTAAAATTTTTTTTATTGGAAACCAATAAAACAACATTCTT</canonical_amplicon>
		<polymorphic_amplicon>AYCGTGTTTTTTCAGTTGATTTTGACCATTTTCAGGAGTCCGGAACACGGCTGTCAAGACTCGTCTCAATGGGCTAACTTTGTTTTTTGATGAGCTTTTCATTTTTATGTGAATCTACATGACTTTCTGAGCAAAATAAAAATATAAAAATAATACCAGCTTTAATTTTAAAATTTTTTTTATTGGAAACCAATAAAACAACATTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39616</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>430115</contig_pos>
        <strand>+</strand>
        <context>TATTTTCTCA[A/G]GGCTTTTCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGTAAAATTTATTTTTTGGTTTTCGTCTGCTTTTGTGTTATTTTCTCA</left_flank>
        <right_flank>GGCTTTTCAAGAATTACGTTGATCCATGAAACATTCAAGTACGAAGATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGCCACTTGACCCAATCAATGCGACAGCTGTACAAGTTCATCACGGAGATGCGGATTTCCATATTGCCAAAGATCAGGTCGATGGATTCCATGAGGAAATGAGAACTCGTCAGGCGGATTTTGTATTCGTCTCTCACGCGAAAGCAATGCATGCCTTCACTGAGCCAGAAGCAGATAGTTTAATGCTCCAGGAGTCGGATACAATGAAAAAGCGGCTAAAAGATCATGGAGAGCAGCAGTGGGACTATTTCATGAAGTCTTTGCTTGAAAAAAAAAAGGCATTTCATAGAATTTTTAGTTTTTATCGTGTAATGTCAACTATCAATAGAACTGGTCACAATGTATTGCGACCACTTGTCTAATTCCCCTCGTGCTTCAATAAATGAAGTATGATAACACTACACGTATAAAACAGTGGACGAACTGCAGAATACTCGACCTGGTTTAATTGTAAAATTTATTTTTTGGTTTTCGTCTGCTTTTGTGTTATTTTCTCAGGGCTTTTCAAGAATTACGTTGATCCATGAAACATTCAAGTACGAAGATGAGGATGTGAAACCTTATTCTGGTGAAATTCCCTCCGAGACACACCCCTATTTTTTTCACGTTTTAAATGCTGTACACCGTGACGGCAGAATGCGTCCCTTGACTTCAAAAAATTTTTAAAAATCTCTTGTCCTCCTTTAACAAAATATACAATTTTAAATCGACCACACAATATATTAACTTTTAAAAGTAAAACTACACAGTAGTTGCTGAAATTACTCAAGATTCTATTCGATTTTTTTCGAGTTAAAACCATTCAGATCTGCTTCTACAGACAAGCATCCGTGTGTTCAGATATTTTCTGTTTTTTGTAGTGTGGCCATGATTCACCAATTAGAAATGGAACGAGCCAAGATGTTGGCTGAATGACAAGAATACGTGGCTCTTGTTGCTGATATGTTCGGAAAAAGGGACCCGTGTTGCCGATACATATTACGTCGGCTCTCACAGTC</canonical>
            <polymorphic>TTTGCCACTTGACCCAATCAATGCGACAGCTGTACAAGTTCATCACGGAGATGCGGATTTCCATATTGCCAAAGATCAGGTCGATGGATTCCATGAGGAAATGAGAACTCGTCAGGCGGATTTTGTATTCGTCTCTCACGCGAAAGCAATGCATGCCTTCACTGAGCCAGAAGCAGATAGTTTAATGCTCCAGGAGTCGGATACAATGAAAAAGCGGCTAAAAGATCATGGAGAGCAGCAGTGGGACTATTTCATGAAGTCTTTGCTTGAAAAAAAAAAGGCATTTCATAGAATTTTTAGTTTTTATCGTGTAATGTCAACTATCAATAGAACTGGTCACAATGTATTGCGACCACTTGTCTAATTCCCCTCGTGCTTCAATAAATGAAGTATGATAACACTACACGTATAAAACAGTGGACGAACTGCAGAATACTCGACCTGGTTTAATTGTAAAATTTATTTTTTGGTTTTCGTCTGCTTTTGTGTTATTTTCTCARGGCTTTTCAAGAATTACGTTGATCCATGAAACATTCAAGTACGAAGATGAGGATGTGAAACCTTATTCTGGTGAAATTCCCTCCGAGACACACCCCTATTTTTTTCACGTTTTAAATGCTGTACACCGTGACGGCAGAATGCGTCCCTTGACTTCAAAAAATTTTTAAAAATCTCTTGTCCTCCTTTAACAAAATATACAATTTTAAATCGACCACACAATATATTAACTTTTAAAAGTAAAACTACACAGTAGTTGCTGAAATTACTCAAGATTCTATTCGATTTTTTTCGAGTTAAAACCATTCAGATCTGCTTCTACAGACAAGCATCCGTGTGTTCAGATATTTTCTGTTTTTTGTAGTGTGGCCATGATTCACCAATTAGAAATGGAACGAGCCAAGATGTTGGCTGAATGACAAGAATACGTGGCTCTTGTTGCTGATATGTTCGGAAAAAGGGACCCGTGTTGCCGATACATATTACGTCGGCTCTCACAGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 334 162</canonical_bands>
                <polymorphic_bands>838 162</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAACTATCAATAGAACTGGTCAC</pcr_primer_p1>
		<pcr_primer_p2>ATAAGGTTTCACATCCTCATCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TCAACTATCAATAGAACTGGTCACAATGTATTGCGACCACTTGTCTAATTCCCCTCGTGCTTCAATAAATGAAGTATGATAACACTACACGTATAAAACAGTGGACGAACTGCAGAATACTCGACCTGGTTTAATTGTAAAATTTATTTTTTGGTTTTCGTCTGCTTTTGTGTTATTTTCTCAGGGCTTTTCAAGAATTACGTTGATCCATGAAACATTCAAGTACGAAGATGAGGATGTGAAACCTTAT</canonical_amplicon>
		<polymorphic_amplicon>TCAACTATCAATAGAACTGGTCACAATGTATTGCGACCACTTGTCTAATTCCCCTCGTGCTTCAATAAATGAAGTATGATAACACTACACGTATAAAACAGTGGACGAACTGCAGAATACTCGACCTGGTTTAATTGTAAAATTTATTTTTTGGTTTTCGTCTGCTTTTGTGTTATTTTCTCARGGCTTTTCAAGAATTACGTTGATCCATGAAACATTCAAGTACGAAGATGAGGATGTGAAACCTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39617</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>434003</contig_pos>
        <strand>+</strand>
        <context>GAAGGCGAGC[C/T]TGAAAACTGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTCGAAGTGACGCGGAACCTTCAATTCGAATCAGAGTTGAAGGCGAGC</left_flank>
        <right_flank>TGAAAACTGTTTAATGTTCTGTCTTTTTATTTCTCGATTAGCGTTTCACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGGTTGTCTGACAGGCTACTGGAATACAAACAGAAAAAGCTACAAGCACAAACTCAAACACAGAAAGTAAAAACAACAGTCTACTGTGTTTCTTTTCTTTTGAAAATTTCATTTTATTTAAACGAGTTATTGGAATATTTTATTTTTATCATCGGTGTCACTTCGAAACTGCGACGCTTCAAAACTAGTCATTTCTAAACCGTGGTTATACAGGCGAATGGATAAATTCCTGACTACAAGAACAATTTGAAGGGGATTCAAATATGCATTTTCCCATAGAGCACATTCAGAAACTCTAAAATTCATTAAAAAACGATTTTTTGGACAGATCAAATGTTTTATTTTCGGATTTCAGAATTTGTCCAAAAATATATTTTAAAGCCCTAAAATTGTTCTTGTAGTCCGAAGTTTATCCGTTCGCCTGTATTCCCACGGTTTTAAAATGAGTGGTTTCGAAGTGACGCGGAACCTTCAATTCGAATCAGAGTTGAAGGCGAGCCTGAAAACTGTTTAATGTTCTGTCTTTTTATTTCTCGATTAGCGTTTCACAAGAGTACATGTTTTGTGACTTTTGTAAAGTAGTAAAAAACGGACAAATTTGTTGTGTTCGCTGTCATGTGGATCTTGTCACTGTCTCTCTCTGTGTGTCCCTCAATTCTTGTATACTATTATATGAATATGTCAGAAATTACCGAAATCCGCCGGTCGGCTGGATAATCGTTTCGAATCGCGCCTTTTATGTGTCTATCTGTTGGGCTGTGTATGTGCCACGCTTGAAAAATTGTACATTTATCGACGAATTATTCGCACCGTTTGGTCGATTTGATCCGGAACCATGGGAGGTTTCCAGGTGAGTTATCTTTGTTAAACGTTATTTGTTCATAAAAGATCTTTATTAAATAATTATGACATTACATTGACAGAAATTTGTCGAATGGATACTGTAGATGGCATTGCCATTGTACTCGTCTTTTCATCTTCTTTTCGATTAATAATTACT</canonical>
            <polymorphic>AGGTTGTCTGACAGGCTACTGGAATACAAACAGAAAAAGCTACAAGCACAAACTCAAACACAGAAAGTAAAAACAACAGTCTACTGTGTTTCTTTTCTTTTGAAAATTTCATTTTATTTAAACGAGTTATTGGAATATTTTATTTTTATCATCGGTGTCACTTCGAAACTGCGACGCTTCAAAACTAGTCATTTCTAAACCGTGGTTATACAGGCGAATGGATAAATTCCTGACTACAAGAACAATTTGAAGGGGATTCAAATATGCATTTTCCCATAGAGCACATTCAGAAACTCTAAAATTCATTAAAAAACGATTTTTTGGACAGATCAAATGTTTTATTTTCGGATTTCAGAATTTGTCCAAAAATATATTTTAAAGCCCTAAAATTGTTCTTGTAGTCCGAAGTTTATCCGTTCGCCTGTATTCCCACGGTTTTAAAATGAGTGGTTTCGAAGTGACGCGGAACCTTCAATTCGAATCAGAGTTGAAGGCGAGCYTGAAAACTGTTTAATGTTCTGTCTTTTTATTTCTCGATTAGCGTTTCACAAGAGTACATGTTTTGTGACTTTTGTAAAGTAGTAAAAAACGGACAAATTTGTTGTGTTCGCTGTCATGTGGATCTTGTCACTGTCTCTCTCTGTGTGTCCCTCAATTCTTGTATACTATTATATGAATATGTCAGAAATTACCGAAATCCGCCGGTCGGCTGGATAATCGTTTCGAATCGCGCCTTTTATGTGTCTATCTGTTGGGCTGTGTATGTGCCACGCTTGAAAAATTGTACATTTATCGACGAATTATTCGCACCGTTTGGTCGATTTGATCCGGAACCATGGGAGGTTTCCAGGTGAGTTATCTTTGTTAAACGTTATTTGTTCATAAAAGATCTTTATTAAATAATTATGACATTACATTGACAGAAATTTGTCGAATGGATACTGTAGATGGCATTGCCATTGTACTCGTCTTTTCATCTTCTTTTCGATTAATAATTACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>342 244 211 117 47 24 15</canonical_bands>
                <polymorphic_bands>342 328 244 47 24 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGTTCTTGTAGTCCGAAGTTTAT</pcr_primer_p1>
		<pcr_primer_p2>GAGAGAGACAGTGACAAGATCC</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGTTCTTGTAGTCCGAAGTTTATCCGTTCGCCTGTATTCCCACGGTTTTAAAATGAGTGGTTTCGAAGTGACGCGGAACCTTCAATTCGAATCAGAGTTGAAGGCGAGCCTGAAAACTGTTTAATGTTCTGTCTTTTTATTTCTCGATTAGCGTTTCACAAGAGTACATGTTTTGTGACTTTTGTAAAGTAGTAAAAAACGGACAAATTTGTTGTGTTCGCTGTCATGTGGATCTTGTCACTGTCTCTCTC</canonical_amplicon>
		<polymorphic_amplicon>TGTTCTTGTAGTCCGAAGTTTATCCGTTCGCCTGTATTCCCACGGTTTTAAAATGAGTGGTTTCGAAGTGACGCGGAACCTTCAATTCGAATCAGAGTTGAAGGCGAGCYTGAAAACTGTTTAATGTTCTGTCTTTTTATTTCTCGATTAGCGTTTCACAAGAGTACATGTTTTGTGACTTTTGTAAAGTAGTAAAAAACGGACAAATTTGTTGTGTTCGCTGTCATGTGGATCTTGTCACTGTCTCTCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39618</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>434698</contig_pos>
        <strand>+</strand>
        <context>AAGCTAGTCC[C/T]TGSAAACTTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AATATTGGGATGTAGCATAGAAGAGGAATCAGAATTTGACAAGCTAGTCC</left_flank>
        <right_flank>TGGAAACTTTCATGAAAACATGTGAATTTTTTGAAACGATTCACACATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCCGCCGGTCGGCTGGATAATCGTTTCGAATCGCGCCTTTTATGTGTCTATCTGTTGGGCTGTGTATGTGCCACGCTTGAAAAATTGTACATTTATCGACGAATTATTCGCACCGTTTGGTCGATTTGATCCGGAACCATGGGAGGTTTCCAGGTGAGTTATCTTTGTTAAACGTTATTTGTTCATAAAAGATCTTTATTAAATAATTATGACATTACATTGACAGAAATTTGTCGAATGGATACTGTAGATGGCATTGCCATTGTACTCGTCTTTTCATCTTCTTTTCGATTAATAATTACTCGAAGAAGAGCATTTCTGTAGGGAACTACGAAGTAGAATGAGATAAATGGGTCAATAAGAGCAGGAAGACATGTTAGAATCATCAGAAGATGTTCAGAAGCAAGATTCTCTTTTCCATTAAGTTGAGAATACGAGTAAACCGAAAATATTGGGATGTAGCATAGAAGAGGAATCAGAATTTGACAAGCTAGTCCCTGGAAACTTTCATGAAAACATGTGAATTTTTTGAAACGATTCACACATTTTAGTGGATGTTTCGTCATCTTTTCATGCCCGTTCTAGATGTTTCTTTCAAAAATAATTTCTTTTTTTTAAACTCACATGAACTAGTGTCTTGGCCTGTGCTTTGGTGCGAGTCGGCAAATTACTATGTGCTCGAATTAGCTTCAAAATGCTTCGTGTCAGAAGAAATGAGCACATGGGAATCCCATAGGCTCCAATAGCTAGAACAGCAGTGGCTGCTAAAAATTGGGAGCTGTTGATGTTTGCAAAACCCGAGAATGGGACATAATAGGATAGATTATAAGTGGGATGTTCTGAATATGTCTGGTTAGTTGCCACAGGGAAATCCCAATTATCTGTGAAGGGAATTATCTGGAATAATTAATGGATACTATGTTCTTGAAGGCTTTCTCACCATTGTGACTATTCCAGGGATATAGGAAAATATGATAATGTAAATGAGATGCCTTTTG</canonical>
            <polymorphic>AATCCGCCGGTCGGCTGGATAATCGTTTCGAATCGCGCCTTTTATGTGTCTATCTGTTGGGCTGTGTATGTGCCACGCTTGAAAAATTGTACATTTATCGACGAATTATTCGCACCGTTTGGTCGATTTGATCCGGAACCATGGGAGGTTTCCAGGTGAGTTATCTTTGTTAAACGTTATTTGTTCATAAAAGATCTTTATTAAATAATTATGACATTACATTGACAGAAATTTGTCGAATGGATACTGTAGATGGCATTGCCATTGTACTCGTCTTTTCATCTTCTTTTCGATTAATAATTACTCGAAGAAGAGCATTTCTGTAGGGAACTACGAAGTAGAATGAGATAAATGGGTCAATAAGAGCAGGAAGACATGTTAGAATCATCAGAAGATGTTCAGAAGCAAGATTCTCTTTTCCATTAAGTTGAGAATACGAGTAAACCGAAAATATTGGGATGTAGCATAGAAGAGGAATCAGAATTTGACAAGCTAGTCCYTGGAAACTTTCATGAAAACATGTGAATTTTTTGAAACGATTCACACATTTTAGTGGATGTTTCGTCATCTTTTCATGCCCGTTCTAGATGTTTCTTTCAAAAATAATTTCTTTTTTTTAAACTCACATGAACTAGTGTCTTGGCCTGTGCTTTGGTGCGAGTCGGCAAATTACTATGTGCTCGAATTAGCTTCAAAATGCTTCGTGTCAGAAGAAATGAGCACATGGGAATCCCATAGGCTCCAATAGCTAGAACAGCAGTGGCTGCTAAAAATTGGGAGCTGTTGATGTTTGCAAAACCCGAGAATGGGACATAATAGGATAGATTATAAGTGGGATGTTCTGAATATGTCTGGTTAGTTGCCACAGGGAAATCCCAATTATCTGTGAAGGGAATTATCTGGAATAATTAATGGATACTATGTTCTTGAAGGCTTTCTCACCATTGTGACTATTCCAGGGATATAGGAAAATATGATAATGTAAATGAGATGCCTTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>457 347 153 43</canonical_bands>
                <polymorphic_bands>804 153 43</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>457 347 153 43</canonical_bands>
                <polymorphic_bands>804 153 43</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATATTGGGATGTAGCATAG</pcr_primer_p1>
		<pcr_primer_p2>AAGCTAATTCGAGCACATAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAATATTGGGATGTAGCATAGAAGAGGAATCAGAATTTGACAAGCTAGTCCCTGGAAACTTTCATGAAAACATGTGAATTTTTTGAAACGATTCACACATTTTAGTGGATGTTTCGTCATCTTTTCATGCCCGTTCTAGATGTTTCTTTCAAAAATAATTTCTTTTTTTTAAACTCACATGAACTAGTGTCTTGGCCTGTGCTTTGGTGCGAGTCGGCAAATTACTATGTGCTCGAATTAGCTT</canonical_amplicon>
		<polymorphic_amplicon>GAAAATATTGGGATGTAGCATAGAAGAGGAATCAGAATTTGACAAGCTAGTCCYTGGAAACTTTCATGAAAACATGTGAATTTTTTGAAACGATTCACACATTTTAGTGGATGTTTCGTCATCTTTTCATGCCCGTTCTAGATGTTTCTTTCAAAAATAATTTCTTTTTTTTAAACTCACATGAACTAGTGTCTTGGCCTGTGCTTTGGTGCGAGTCGGCAAATTACTATGTGCTCGAATTAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39619</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>434701</contig_pos>
        <strand>+</strand>
        <context>CTAGTCCYTG[C/G]AAACTTTCAT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>ATTGGGATGTAGCATAGAAGAGGAATCAGAATTTGACAAGCTAGTCCCTG</left_flank>
        <right_flank>AAACTTTCATGAAAACATGTGAATTTTTTGAAACGATTCACACATTTTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCGCCGGTCGGCTGGATAATCGTTTCGAATCGCGCCTTTTATGTGTCTATCTGTTGGGCTGTGTATGTGCCACGCTTGAAAAATTGTACATTTATCGACGAATTATTCGCACCGTTTGGTCGATTTGATCCGGAACCATGGGAGGTTTCCAGGTGAGTTATCTTTGTTAAACGTTATTTGTTCATAAAAGATCTTTATTAAATAATTATGACATTACATTGACAGAAATTTGTCGAATGGATACTGTAGATGGCATTGCCATTGTACTCGTCTTTTCATCTTCTTTTCGATTAATAATTACTCGAAGAAGAGCATTTCTGTAGGGAACTACGAAGTAGAATGAGATAAATGGGTCAATAAGAGCAGGAAGACATGTTAGAATCATCAGAAGATGTTCAGAAGCAAGATTCTCTTTTCCATTAAGTTGAGAATACGAGTAAACCGAAAATATTGGGATGTAGCATAGAAGAGGAATCAGAATTTGACAAGCTAGTCCCTGGAAACTTTCATGAAAACATGTGAATTTTTTGAAACGATTCACACATTTTAGTGGATGTTTCGTCATCTTTTCATGCCCGTTCTAGATGTTTCTTTCAAAAATAATTTCTTTTTTTTAAACTCACATGAACTAGTGTCTTGGCCTGTGCTTTGGTGCGAGTCGGCAAATTACTATGTGCTCGAATTAGCTTCAAAATGCTTCGTGTCAGAAGAAATGAGCACATGGGAATCCCATAGGCTCCAATAGCTAGAACAGCAGTGGCTGCTAAAAATTGGGAGCTGTTGATGTTTGCAAAACCCGAGAATGGGACATAATAGGATAGATTATAAGTGGGATGTTCTGAATATGTCTGGTTAGTTGCCACAGGGAAATCCCAATTATCTGTGAAGGGAATTATCTGGAATAATTAATGGATACTATGTTCTTGAAGGCTTTCTCACCATTGTGACTATTCCAGGGATATAGGAAAATATGATAATGTAAATGAGATGCCTTTTGGTG</canonical>
            <polymorphic>CCGCCGGTCGGCTGGATAATCGTTTCGAATCGCGCCTTTTATGTGTCTATCTGTTGGGCTGTGTATGTGCCACGCTTGAAAAATTGTACATTTATCGACGAATTATTCGCACCGTTTGGTCGATTTGATCCGGAACCATGGGAGGTTTCCAGGTGAGTTATCTTTGTTAAACGTTATTTGTTCATAAAAGATCTTTATTAAATAATTATGACATTACATTGACAGAAATTTGTCGAATGGATACTGTAGATGGCATTGCCATTGTACTCGTCTTTTCATCTTCTTTTCGATTAATAATTACTCGAAGAAGAGCATTTCTGTAGGGAACTACGAAGTAGAATGAGATAAATGGGTCAATAAGAGCAGGAAGACATGTTAGAATCATCAGAAGATGTTCAGAAGCAAGATTCTCTTTTCCATTAAGTTGAGAATACGAGTAAACCGAAAATATTGGGATGTAGCATAGAAGAGGAATCAGAATTTGACAAGCTAGTCCCTGSAAACTTTCATGAAAACATGTGAATTTTTTGAAACGATTCACACATTTTAGTGGATGTTTCGTCATCTTTTCATGCCCGTTCTAGATGTTTCTTTCAAAAATAATTTCTTTTTTTTAAACTCACATGAACTAGTGTCTTGGCCTGTGCTTTGGTGCGAGTCGGCAAATTACTATGTGCTCGAATTAGCTTCAAAATGCTTCGTGTCAGAAGAAATGAGCACATGGGAATCCCATAGGCTCCAATAGCTAGAACAGCAGTGGCTGCTAAAAATTGGGAGCTGTTGATGTTTGCAAAACCCGAGAATGGGACATAATAGGATAGATTATAAGTGGGATGTTCTGAATATGTCTGGTTAGTTGCCACAGGGAAATCCCAATTATCTGTGAAGGGAATTATCTGGAATAATTAATGGATACTATGTTCTTGAAGGCTTTCTCACCATTGTGACTATTCCAGGGATATAGGAAAATATGATAATGTAAATGAGATGCCTTTTGGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>457 347 150 46</canonical_bands>
                <polymorphic_bands>804 150 46</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>458 359 136 47</canonical_bands>
                <polymorphic_bands>817 136 47</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>457 347 150 46</canonical_bands>
                <polymorphic_bands>804 150 46</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAAAATATTGGGATGTAGCATAG</pcr_primer_p1>
		<pcr_primer_p2>AAGCTAATTCGAGCACATAGTAA</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GAAAATATTGGGATGTAGCATAGAAGAGGAATCAGAATTTGACAAGCTAGTCCCTGGAAACTTTCATGAAAACATGTGAATTTTTTGAAACGATTCACACATTTTAGTGGATGTTTCGTCATCTTTTCATGCCCGTTCTAGATGTTTCTTTCAAAAATAATTTCTTTTTTTTAAACTCACATGAACTAGTGTCTTGGCCTGTGCTTTGGTGCGAGTCGGCAAATTACTATGTGCTCGAATTAGCTT</canonical_amplicon>
		<polymorphic_amplicon>GAAAATATTGGGATGTAGCATAGAAGAGGAATCAGAATTTGACAAGCTAGTCCCTGSAAACTTTCATGAAAACATGTGAATTTTTTGAAACGATTCACACATTTTAGTGGATGTTTCGTCATCTTTTCATGCCCGTTCTAGATGTTTCTTTCAAAAATAATTTCTTTTTTTTAAACTCACATGAACTAGTGTCTTGGCCTGTGCTTTGGTGCGAGTCGGCAAATTACTATGTGCTCGAATTAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39620</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>443558</contig_pos>
        <strand>+</strand>
        <context>AATGGGAAAC[A/C]CCGTCCAATC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGCAAAAGTGGATATTTGAATGACGGATACATGGAAGACAATGGGAAAC</left_flank>
        <right_flank>CCGTCCAATCCAAATGAGACATAGCGATTCAACTAGAAGCTTCACTCCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAGTTGGTTTTGTTTGCTGAGGAAATCATCCACGGAGCTGCCAATGATAACTGTCTTATTGTTACCAAAGGAATCACCGACTTCCCTGAATACTCGGAAAGACTCACAGGTTTTATTGACATTTGGTGGATTGTTCAAGATGGAGGAATTCTGATGTTGATTGCGTATCTTCTCCGTCAACACAAAGTCTGGAAAGGATGTACTCTTCGTATTTTCGCTGTCAGTGAGCAAGATTCTACTAAATCGGAGGATATGAAAGCAGGACTTCAGAAGTACATCTACATGTTACGAATTGACGCAGAACTCTTTGTAAGCAATAAAATCACAAAAAATGTAACTGAATTTTGATTTTAGATTGTCGATCTTCTGGATATGGAGGTTTCGGATGAAGTGGTTGAGAAGGCAGCTGAGGTGGAAAGAAAACAAAAAGAGCGTGAGGAAATGAGAAGAAGCAAAAGTGGATATTTGAATGACGGATACATGGAAGACAATGGGAAACACCGTCCAATCCAAATGAGACATAGCGATTCAACTAGAAGCTTCACTCCACAGCCACACACTTCCATTAATTTGGATGAGTCAGCCGAGACTTCATTTACCGAGTTAGTTTGAAATTCGTAAACTAAATTGTTGATAGCATAACTTCAGAAGCCTTTTCGATGACTTCTACCGATCTGGAACTCCGAATGAGGATATGGAAGGGGCAATGAAGCTGAACATCCATAAAATGAACACTTCGGTCCGATTGAACCGTGTGATCCGTGAAAACTCCCCAGACTCTCAACTCATTCTATTGAATCTCCCATCTCCACCAAGAAACCGACTTGCTTTCAACAATTCTTATATGGTATCTAATATTTTGTTTCATCTTGTTTGACTGAAACGTTTTCAGACCTACTTGGACGTCCTCACCGAAGACTTGCCACGTGTCCTCTTCATCGGTGGCAGTGGTCGTGAAGTGATCACAATTGACTCTTAAACCAACTAAGATACTCTAATT</canonical>
            <polymorphic>GAGTTGGTTTTGTTTGCTGAGGAAATCATCCACGGAGCTGCCAATGATAACTGTCTTATTGTTACCAAAGGAATCACCGACTTCCCTGAATACTCGGAAAGACTCACAGGTTTTATTGACATTTGGTGGATTGTTCAAGATGGAGGAATTCTGATGTTGATTGCGTATCTTCTCCGTCAACACAAAGTCTGGAAAGGATGTACTCTTCGTATTTTCGCTGTCAGTGAGCAAGATTCTACTAAATCGGAGGATATGAAAGCAGGACTTCAGAAGTACATCTACATGTTACGAATTGACGCAGAACTCTTTGTAAGCAATAAAATCACAAAAAATGTAACTGAATTTTGATTTTAGATTGTCGATCTTCTGGATATGGAGGTTTCGGATGAAGTGGTTGAGAAGGCAGCTGAGGTGGAAAGAAAACAAAAAGAGCGTGAGGAAATGAGAAGAAGCAAAAGTGGATATTTGAATGACGGATACATGGAAGACAATGGGAAACMCCGTCCAATCCAAATGAGACATAGCGATTCAACTAGAAGCTTCACTCCACAGCCACACACTTCCATTAATTTGGATGAGTCAGCCGAGACTTCATTTACCGAGTTAGTTTGAAATTCGTAAACTAAATTGTTGATAGCATAACTTCAGAAGCCTTTTCGATGACTTCTACCGATCTGGAACTCCGAATGAGGATATGGAAGGGGCAATGAAGCTGAACATCCATAAAATGAACACTTCGGTCCGATTGAACCGTGTGATCCGTGAAAACTCCCCAGACTCTCAACTCATTCTATTGAATCTCCCATCTCCACCAAGAAACCGACTTGCTTTCAACAATTCTTATATGGTATCTAATATTTTGTTTCATCTTGTTTGACTGAAACGTTTTCAGACCTACTTGGACGTCCTCACCGAAGACTTGCCACGTGTCCTCTTCATCGGTGGCAGTGGTCGTGAAGTGATCACAATTGACTCTTAAACCAACTAAGATACTCTAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>450 250 248 52</canonical_bands>
                <polymorphic_bands>700 248 52</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>175 100 99 68 54 47 44 44 44 40 35 32 30 24 22 22 21 21 15 14 7 6 6 6 5 5 4 4 2 2 2</canonical_bands>
                <polymorphic_bands>175 100 99 84 68 54 47 44 44 35 32 30 24 22 22 21 21 15 14 7 6 6 6 5 5 4 4 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTTCTGGATATGGAGGTTTC</pcr_primer_p1>
		<pcr_primer_p2>TCAAACTAACTCGGTAAATGAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATCTTCTGGATATGGAGGTTTCGGATGAAGTGGTTGAGAAGGCAGCTGAGGTGGAAAGAAAACAAAAAGAGCGTGAGGAAATGAGAAGAAGCAAAAGTGGATATTTGAATGACGGATACATGGAAGACAATGGGAAACACCGTCCAATCCAAATGAGACATAGCGATTCAACTAGAAGCTTCACTCCACAGCCACACACTTCCATTAATTTGGATGAGTCAGCCGAGACTTCATTTACCGAGTTAGTTTGA</canonical_amplicon>
		<polymorphic_amplicon>ATCTTCTGGATATGGAGGTTTCGGATGAAGTGGTTGAGAAGGCAGCTGAGGTGGAAAGAAAACAAAAAGAGCGTGAGGAAATGAGAAGAAGCAAAAGTGGATATTTGAATGACGGATACATGGAAGACAATGGGAAACMCCGTCCAATCCAAATGAGACATAGCGATTCAACTAGAAGCTTCACTCCACAGCCACACACTTCCATTAATTTGGATGAGTCAGCCGAGACTTCATTTACCGAGTTAGTTTGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39621</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>445143</contig_pos>
        <strand></strand>
        <context>acttttttgg[G/A]ggttttcagc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTCCGGCAATTTATCAGATTTTAAATTTTTCATTTTCCGACTTTTTTGG</left_flank>
        <right_flank>GGTTTTCAGCACAAATATTTTTAAGAAGCAACATTATTCAAGAAAAAAAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAAAATTCAGTTGCATTATATTATGCTGATATGCAAGAATCAAAGGCTCCGCGTCACTTCGAAACTGCGACACTTCGAAACCGGTCATTTCGAAACCGTGCGAATGGATAAACTTCAGACTGCAAAAACAATATTAGGGTTTTCGGATACGCTCTTTCTGATATTTAGAACACATTCTATAACTCAAAAATTCAAAAAAAATCTTGAAACAACTAAAATTTGGAATTTTTAGAGTTTAAGAACTTGTTCTATCAGAAAGATCATATTTGAAAACCCAAGCACTGTTTTTATAGTCTGAATTTTAACCATTCGGCTGTATTACCACGATTTCTAAATGGCTACGAAGAGTCGCGGAGCCTAATCGGAGCTCTGGAAGAGAAAATCTGGTAGCCGCTGCCACGGCCGAACTACCGTAATTTGGAATTATTTTCCCTCAATTTTCGTCCGTTTTCCGGCAATTTATCAGATTTTAAATTTTTCATTTTCCGACTTTTTTGGGGGTTTTCAGCACAAATATTTTTAAGAAGCAACATTATTCAAGAAAAAAAGACCGAAACTTTTAGGTTATCAGTTGGCCACGCCCACAATCATTTCTCTTACACGGCTTTTTTGTACACCAGAATAATAATTTTCTAGTAAACTCAGTGGAACTCTCTAAAGTGCATCATCGTTTCAAAATCTGACATCAAAAAATTTGAATATCCGGCTGATCATTGAATTCCGATGACCACTACAAAGACAAAAACGGGTTGACCTAGCAATTCTTCCAAAAGGTTTATCCCTAAATTGTTTATCTCTATTCACTTCCTTTAACGTCAATGCCCAGAATTGTTGCATATGATTTACACATTTTCCCCGCTTTTCTATATTTTCCCAAAAAATGATTCCATTTTGTATCTGTGTGGCATGATGGGATATTTATCTGCTGCAATTAATTCGTTTGACATTTTCTAAAAAAGGAAGTAGTATTATTAGTAGAAGTAAAACTAATCCATCATT</canonical>
            <polymorphic>CAAAAATTCAGTTGCATTATATTATGCTGATATGCAAGAATCAAAGGCTCCGCGTCACTTCGAAACTGCGACACTTCGAAACCGGTCATTTCGAAACCGTGCGAATGGATAAACTTCAGACTGCAAAAACAATATTAGGGTTTTCGGATACGCTCTTTCTGATATTTAGAACACATTCTATAACTCAAAAATTCAAAAAAAATCTTGAAACAACTAAAATTTGGAATTTTTAGAGTTTAAGAACTTGTTCTATCAGAAAGATCATATTTGAAAACCCAAGCACTGTTTTTATAGTCTGAATTTTAACCATTCGGCTGTATTACCACGATTTCTAAATGGCTACGAAGAGTCGCGGAGCCTAATCGGAGCTCTGGAAGAGAAAATCTGGTAGCCGCTGCCACGGCCGAACTACCGTAATTTGGAATTATTTTCCCTCAATTTTCGTCCGTTTTCCGGCAATTTATCAGATTTTAAATTTTTCATTTTCCGACTTTTTTGGRGGTTTTCAGCACAAATATTTTTAAGAAGCAACATTATTCAAGAAAAAAAGACCGAAACTTTTAGGTTATCAGTTGGCCACGCCCACAATCATTTCTCTTACACGGCTTTTTTGTACACCAGAATAATAATTTTCTAGTAAACTCAGTGGAACTCTCTAAAGTGCATCATCGTTTCAAAATCTGACATCAAAAAATTTGAATATCCGGCTGATCATTGAATTCCGATGACCACTACAAAGACAAAAACGGGTTGACCTAGCAATTCTTCCAAAAGGTTTATCCCTAAATTGTTTATCTCTATTCACTTCCTTTAACGTCAATGCCCAGAATTGTTGCATATGATTTACACATTTTCCCCGCTTTTCTATATTTTCCCAAAAAATGATTCCATTTTGTATCTGTGTGGCATGATGGGATATTTATCTGCTGCAATTAATTCGTTTGACATTTTCTAAAAAAGGAAGTAGTATTATTAGTAGAAGTAAAACTAATCCATCATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCTAAATGGCTACGAAGAGTC</pcr_primer_p1>
		<pcr_primer_p2>AGAGAGTTCCACTGAGTTTACTAGA</pcr_primer_p2>
		<pcr_amplicon_size>328</pcr_amplicon_size>
		<canonical_amplicon>TTCTAAATGGCTACGAAGAGTCGCGGAGCCTAATCGGAGCTCTGGAAGAGAAAATCTGGTAGCCGCTGCCACGGCCGAACTACCGTAATTTGGAATTATTTTCCCTCAATTTTCGTCCGTTTTCCGGCAATTTATCAGATTTTAAATTTTTCATTTTCCGACTTTTTTGGGGGTTTTCAGCACAAATATTTTTAAGAAGCAACATTATTCAAGAAAAAAAGACCGAAACTTTTAGGTTATCAGTTGGCCACGCCCACAATCATTTCTCTTACACGGCTTTTTTGTACACCAGAATAATAATTTTCTAGTAAACTCAGTGGAACTCTCT</canonical_amplicon>
		<polymorphic_amplicon>TTCTAAATGGCTACGAAGAGTCGCGGAGCCTAATCGGAGCTCTGGAAGAGAAAATCTGGTAGCCGCTGCCACGGCCGAACTACCGTAATTTGGAATTATTTTCCCTCAATTTTCGTCCGTTTTCCGGCAATTTATCAGATTTTAAATTTTTCATTTTCCGACTTTTTTGGRGGTTTTCAGCACAAATATTTTTAAGAAGCAACATTATTCAAGAAAAAAAGACCGAAACTTTTAGGTTATCAGTTGGCCACGCCCACAATCATTTCTCTTACACGGCTTTTTTGTACACCAGAATAATAATTTTCTAGTAAACTCAGTGGAACTCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39622</snp_id>
        <super_contig>c014100846.Contig14</super_contig>
        <contig_pos>445165</contig_pos>
        <strand></strand>
        <context>caaatatttt[T/G]aagaagcaac</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TAAATTTTTCATTTTCCGACTTTTTTGGGGGTTTTCAGCACAAATATTTT</left_flank>
        <right_flank>AAGAAGCAACATTATTCAAGAAAAAAAGACCGAAACTTTTAGGTTATCAG</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATGCTGATATGCAAGAATCAAAGGCTCCGCGTCACTTCGAAACTGCGACACTTCGAAACCGGTCATTTCGAAACCGTGCGAATGGATAAACTTCAGACTGCAAAAACAATATTAGGGTTTTCGGATACGCTCTTTCTGATATTTAGAACACATTCTATAACTCAAAAATTCAAAAAAAATCTTGAAACAACTAAAATTTGGAATTTTTAGAGTTTAAGAACTTGTTCTATCAGAAAGATCATATTTGAAAACCCAAGCACTGTTTTTATAGTCTGAATTTTAACCATTCGGCTGTATTACCACGATTTCTAAATGGCTACGAAGAGTCGCGGAGCCTAATCGGAGCTCTGGAAGAGAAAATCTGGTAGCCGCTGCCACGGCCGAACTACCGTAATTTGGAATTATTTTCCCTCAATTTTCGTCCGTTTTCCGGCAATTTATCAGATTTTAAATTTTTCATTTTCCGACTTTTTTGGGGGTTTTCAGCACAAATATTTTTAAGAAGCAACATTATTCAAGAAAAAAAGACCGAAACTTTTAGGTTATCAGTTGGCCACGCCCACAATCATTTCTCTTACACGGCTTTTTTGTACACCAGAATAATAATTTTCTAGTAAACTCAGTGGAACTCTCTAAAGTGCATCATCGTTTCAAAATCTGACATCAAAAAATTTGAATATCCGGCTGATCATTGAATTCCGATGACCACTACAAAGACAAAAACGGGTTGACCTAGCAATTCTTCCAAAAGGTTTATCCCTAAATTGTTTATCTCTATTCACTTCCTTTAACGTCAATGCCCAGAATTGTTGCATATGATTTACACATTTTCCCCGCTTTTCTATATTTTCCCAAAAAATGATTCCATTTTGTATCTGTGTGGCATGATGGGATATTTATCTGCTGCAATTAATTCGTTTGACATTTTCTAAAAAAGGAAGTAGTATTATTAGTAGAAGTAAAACTAATCCATCATTTCCCAGCTCTTGTTTTCTCTTT</canonical>
            <polymorphic>TATGCTGATATGCAAGAATCAAAGGCTCCGCGTCACTTCGAAACTGCGACACTTCGAAACCGGTCATTTCGAAACCGTGCGAATGGATAAACTTCAGACTGCAAAAACAATATTAGGGTTTTCGGATACGCTCTTTCTGATATTTAGAACACATTCTATAACTCAAAAATTCAAAAAAAATCTTGAAACAACTAAAATTTGGAATTTTTAGAGTTTAAGAACTTGTTCTATCAGAAAGATCATATTTGAAAACCCAAGCACTGTTTTTATAGTCTGAATTTTAACCATTCGGCTGTATTACCACGATTTCTAAATGGCTACGAAGAGTCGCGGAGCCTAATCGGAGCTCTGGAAGAGAAAATCTGGTAGCCGCTGCCACGGCCGAACTACCGTAATTTGGAATTATTTTCCCTCAATTTTCGTCCGTTTTCCGGCAATTTATCAGATTTTAAATTTTTCATTTTCCGACTTTTTTGGGGGTTTTCAGCACAAATATTTTKAAGAAGCAACATTATTCAAGAAAAAAAGACCGAAACTTTTAGGTTATCAGTTGGCCACGCCCACAATCATTTCTCTTACACGGCTTTTTTGTACACCAGAATAATAATTTTCTAGTAAACTCAGTGGAACTCTCTAAAGTGCATCATCGTTTCAAAATCTGACATCAAAAAATTTGAATATCCGGCTGATCATTGAATTCCGATGACCACTACAAAGACAAAAACGGGTTGACCTAGCAATTCTTCCAAAAGGTTTATCCCTAAATTGTTTATCTCTATTCACTTCCTTTAACGTCAATGCCCAGAATTGTTGCATATGATTTACACATTTTCCCCGCTTTTCTATATTTTCCCAAAAAATGATTCCATTTTGTATCTGTGTGGCATGATGGGATATTTATCTGCTGCAATTAATTCGTTTGACATTTTCTAAAAAAGGAAGTAGTATTATTAGTAGAAGTAAAACTAATCCATCATTTCCCAGCTCTTGTTTTCTCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>290 215 168 122 89 66 50</canonical_bands>
                <polymorphic_bands>340 215 168 122 89 66</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCTAAATGGCTACGAAGAGTC</pcr_primer_p1>
		<pcr_primer_p2>AGAGAGTTCCACTGAGTTTACTAGA</pcr_primer_p2>
		<pcr_amplicon_size>328</pcr_amplicon_size>
		<canonical_amplicon>TTCTAAATGGCTACGAAGAGTCGCGGAGCCTAATCGGAGCTCTGGAAGAGAAAATCTGGTAGCCGCTGCCACGGCCGAACTACCGTAATTTGGAATTATTTTCCCTCAATTTTCGTCCGTTTTCCGGCAATTTATCAGATTTTAAATTTTTCATTTTCCGACTTTTTTGGGGGTTTTCAGCACAAATATTTTTAAGAAGCAACATTATTCAAGAAAAAAAGACCGAAACTTTTAGGTTATCAGTTGGCCACGCCCACAATCATTTCTCTTACACGGCTTTTTTGTACACCAGAATAATAATTTTCTAGTAAACTCAGTGGAACTCTCT</canonical_amplicon>
		<polymorphic_amplicon>TTCTAAATGGCTACGAAGAGTCGCGGAGCCTAATCGGAGCTCTGGAAGAGAAAATCTGGTAGCCGCTGCCACGGCCGAACTACCGTAATTTGGAATTATTTTCCCTCAATTTTCGTCCGTTTTCCGGCAATTTATCAGATTTTAAATTTTTCATTTTCCGACTTTTTTGGGGGTTTTCAGCACAAATATTTTKAAGAAGCAACATTATTCAAGAAAAAAAGACCGAAACTTTTAGGTTATCAGTTGGCCACGCCCACAATCATTTCTCTTACACGGCTTTTTTGTACACCAGAATAATAATTTTCTAGTAAACTCAGTGGAACTCTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39623</snp_id>
        <super_contig>c014100876.Contig1</super_contig>
        <contig_pos>2788</contig_pos>
        <strand>+</strand>
        <context>CCAGCGAGGG[C/T]GAAGATTCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAGACGTCAACCTCCAAATATTGATTTTCTAGTAAACATCCAGCGAGGG</left_flank>
        <right_flank>GAAGATTCGAAGACGTGGTGGAGAGGTTCTGGAAGATTCAAATTTCCCGC</right_flank>
        <qual_score>137</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTTTCTAGGCTATTACCTAATTTTTGGGTTTTCTAGGTCATGACCTAATTTTTTGGATTTTCTATGTCATGGCCTAATTTTTGGATTTTTTCGGCCATGACCTATTTTTTCTAGGTCATGACCTAATTTTTTGGATTTTTTAGGTCATGACCTAATTTTCGAATTTTCTAGGTCATGACCTAATTTTCGAATTTTCTAGGTCATGACCTAATTTTCGAATTTTCTAGGCTATTACCTAATTTTTGGGTTTTCTAGGTCATGACCTAATTTTTTTGGATTTTCTATGCCACCAAACCTTTTCCAGTTCTCCAGAAGACGTCAAATTCGCAACAAAAGTGTTTGCCACATAAAAACATGGAGTTGCTGAAATTCCAGATGAATCCCGACAATTCGCTTTATGAGCGTCCCCAAAAATTTTCAGAACTTTTGGACTTCTGACTCCCTTCGAGAAGACGTCAACCTCCAAATATTGATTTTCTAGTAAACATCCAGCGAGGGTGAAGATTCGAAGACGTGGTGGAGAGGTTCTGGAAGATTCAAATTTCCCGCCAAGCCGAAAATTTGAAAAATTGAAGTTTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTGAAGGAGATGCGAAATGAAA</canonical>
            <polymorphic>ATTTTCTAGGCTATTACCTAATTTTTGGGTTTTCTAGGTCATGACCTAATTTTTTGGATTTTCTATGTCATGGCCTAATTTTTGGATTTTTTCGGCCATGACCTATTTTTTCTAGGTCATGACCTAATTTTTTGGATTTTTTAGGTCATGACCTAATTTTCGAATTTTCTAGGTCATGACCTAATTTTCGAATTTTCTAGGTCATGACCTAATTTTCGAATTTTCTAGGCTATTACCTAATTTTTGGGTTTTCTAGGTCATGACCTAATTTTTTTGGATTTTCTATGCCACCAAACCTTTTCCAGTTCTCCAGAAGACGTCAAATTCGCAACAAAAGTGTTTGCCACATAAAAACATGGAGTTGCTGAAATTCCAGATGAATCCCGACAATTCGCTTTATGAGCGTCCCCAAAAATTTTCAGAACTTTTGGACTTCTGACTCCCTTCGAGAAGACGTCAACCTCCAAATATTGATTTTCTAGTAAACATCCAGCGAGGGYGAAGATTCGAAGACGTGGTGGAGAGGTTCTGGAAGATTCAAATTTCCCGCCAAGCCGAAAATTTGAAAAATTGAAGTTTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTGAAGGAGATGCGAAATGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>290 155 95 73 70 66 49 29 27 23 22 19 17 16 14 9 9 7 7 3</canonical_bands>
                <polymorphic_bands>290 171 95 73 70 66 49 29 27 23 22 19 17 14 9 9 7 7 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCACATAAAAACATGGAGTTG</pcr_primer_p1>
		<pcr_primer_p2>TGGATTTTAGGTAAAAACTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCACATAAAAACATGGAGTTGCTGAAATTCCAGATGAATCCCGACAATTCGCTTTATGAGCGTCCCCAAAAATTTTCAGAACTTTTGGACTTCTGACTCCCTTCGAGAAGACGTCAACCTCCAAATATTGATTTTCTAGTAAACATCCAGCGAGGGTGAAGATTCGAAGACGTGGTGGAGAGGTTCTGGAAGATTCAAATTTCCCGCCAAGCCGAAAATTTGAAAAATTGAAGTTTTTACCTAAAATCCA</canonical_amplicon>
		<polymorphic_amplicon>CCACATAAAAACATGGAGTTGCTGAAATTCCAGATGAATCCCGACAATTCGCTTTATGAGCGTCCCCAAAAATTTTCAGAACTTTTGGACTTCTGACTCCCTTCGAGAAGACGTCAACCTCCAAATATTGATTTTCTAGTAAACATCCAGCGAGGGYGAAGATTCGAAGACGTGGTGGAGAGGTTCTGGAAGATTCAAATTTCCCGCCAAGCCGAAAATTTGAAAAATTGAAGTTTTTACCTAAAATCCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39624</snp_id>
        <super_contig>c014100876.Contig1</super_contig>
        <contig_pos>2891</contig_pos>
        <strand>+</strand>
        <context>ACATAAGCGT[C/T]TTTGTAGAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGCCGAAAATTTGAAAAATTGAAGTTTTTACCTAAAATCCACATAAGCGT</left_flank>
        <right_flank>TTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAA</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATTTTTTCTAGGTCATGACCTAATTTTTTGGATTTTTTAGGTCATGACCTAATTTTCGAATTTTCTAGGTCATGACCTAATTTTCGAATTTTCTAGGTCATGACCTAATTTTCGAATTTTCTAGGCTATTACCTAATTTTTGGGTTTTCTAGGTCATGACCTAATTTTTTTGGATTTTCTATGCCACCAAACCTTTTCCAGTTCTCCAGAAGACGTCAAATTCGCAACAAAAGTGTTTGCCACATAAAAACATGGAGTTGCTGAAATTCCAGATGAATCCCGACAATTCGCTTTATGAGCGTCCCCAAAAATTTTCAGAACTTTTGGACTTCTGACTCCCTTCGAGAAGACGTCAACCTCCAAATATTGATTTTCTAGTAAACATCCAGCGAGGGTGAAGATTCGAAGACGTGGTGGAGAGGTTCTGGAAGATTCAAATTTCCCGCCAAGCCGAAAATTTGAAAAATTGAAGTTTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTGAAGGAGATGCGAAATGAAAGAATCAATAAAAGCAGAAAATTCATTTTTCTGGCTGGAAAAAATGGATCTGAAACTAACTAATATTTTCAGGTTTTTTTGAAGATTTAAAAATTTATACATGT</canonical>
            <polymorphic>TATTTTTTCTAGGTCATGACCTAATTTTTTGGATTTTTTAGGTCATGACCTAATTTTCGAATTTTCTAGGTCATGACCTAATTTTCGAATTTTCTAGGTCATGACCTAATTTTCGAATTTTCTAGGCTATTACCTAATTTTTGGGTTTTCTAGGTCATGACCTAATTTTTTTGGATTTTCTATGCCACCAAACCTTTTCCAGTTCTCCAGAAGACGTCAAATTCGCAACAAAAGTGTTTGCCACATAAAAACATGGAGTTGCTGAAATTCCAGATGAATCCCGACAATTCGCTTTATGAGCGTCCCCAAAAATTTTCAGAACTTTTGGACTTCTGACTCCCTTCGAGAAGACGTCAACCTCCAAATATTGATTTTCTAGTAAACATCCAGCGAGGGTGAAGATTCGAAGACGTGGTGGAGAGGTTCTGGAAGATTCAAATTTCCCGCCAAGCCGAAAATTTGAAAAATTGAAGTTTTTACCTAAAATCCACATAAGCGTYTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTGAAGGAGATGCGAAATGAAAGAATCAATAAAAGCAGAAAATTCATTTTTCTGGCTGGAAAAAATGGATCTGAAACTAACTAATATTTTCAGGTTTTTTTGAAGATTTAAAAATTTATACATGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAGGTTCTGGAAGATTCAAA</pcr_primer_p1>
		<pcr_primer_p2>AGTGAGAAGTGGGCTAGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>398</pcr_amplicon_size>
		<canonical_amplicon>AGAGGTTCTGGAAGATTCAAATTTCCCGCCAAGCCGAAAATTTGAAAAATTGAAGTTTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACT</canonical_amplicon>
		<polymorphic_amplicon>AGAGGTTCTGGAAGATTCAAATTTCCCGCCAAGCCGAAAATTTGAAAAATTGAAGTTTTTACCTAAAATCCACATAAGCGTYTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39625</snp_id>
        <super_contig>c014100876.Contig1</super_contig>
        <contig_pos>2918</contig_pos>
        <strand>+</strand>
        <context>GGGAAGGAGG[A/G]GTTGATTGGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGG</left_flank>
        <right_flank>GTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTGGATTTTTTAGGTCATGACCTAATTTTCGAATTTTCTAGGTCATGACCTAATTTTCGAATTTTCTAGGTCATGACCTAATTTTCGAATTTTCTAGGCTATTACCTAATTTTTGGGTTTTCTAGGTCATGACCTAATTTTTTTGGATTTTCTATGCCACCAAACCTTTTCCAGTTCTCCAGAAGACGTCAAATTCGCAACAAAAGTGTTTGCCACATAAAAACATGGAGTTGCTGAAATTCCAGATGAATCCCGACAATTCGCTTTATGAGCGTCCCCAAAAATTTTCAGAACTTTTGGACTTCTGACTCCCTTCGAGAAGACGTCAACCTCCAAATATTGATTTTCTAGTAAACATCCAGCGAGGGTGAAGATTCGAAGACGTGGTGGAGAGGTTCTGGAAGATTCAAATTTCCCGCCAAGCCGAAAATTTGAAAAATTGAAGTTTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTGAAGGAGATGCGAAATGAAAGAATCAATAAAAGCAGAAAATTCATTTTTCTGGCTGGAAAAAATGGATCTGAAACTAACTAATATTTTCAGGTTTTTTTGAAGATTTAAAAATTTATACATGTGAAAACGTGGATTTGGGAATGTATGTG</canonical>
            <polymorphic>TTTGGATTTTTTAGGTCATGACCTAATTTTCGAATTTTCTAGGTCATGACCTAATTTTCGAATTTTCTAGGTCATGACCTAATTTTCGAATTTTCTAGGCTATTACCTAATTTTTGGGTTTTCTAGGTCATGACCTAATTTTTTTGGATTTTCTATGCCACCAAACCTTTTCCAGTTCTCCAGAAGACGTCAAATTCGCAACAAAAGTGTTTGCCACATAAAAACATGGAGTTGCTGAAATTCCAGATGAATCCCGACAATTCGCTTTATGAGCGTCCCCAAAAATTTTCAGAACTTTTGGACTTCTGACTCCCTTCGAGAAGACGTCAACCTCCAAATATTGATTTTCTAGTAAACATCCAGCGAGGGTGAAGATTCGAAGACGTGGTGGAGAGGTTCTGGAAGATTCAAATTTCCCGCCAAGCCGAAAATTTGAAAAATTGAAGTTTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGRGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTGAAGGAGATGCGAAATGAAAGAATCAATAAAAGCAGAAAATTCATTTTTCTGGCTGGAAAAAATGGATCTGAAACTAACTAATATTTTCAGGTTTTTTTGAAGATTTAAAAATTTATACATGTGAAAACGTGGATTTGGGAATGTATGTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTACCTAAAATCCACATAAGC</pcr_primer_p1>
		<pcr_primer_p2>AGTGAGAAGTGGGCTAGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>TTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACT</canonical_amplicon>
		<polymorphic_amplicon>TTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGRGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39626</snp_id>
        <super_contig>c014100876.Contig1</super_contig>
        <contig_pos>2939</contig_pos>
        <strand>+</strand>
        <context>TCACTTCTGA[A/C]AATGTGAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGA</left_flank>
        <right_flank>AATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCTAATTTTCGAATTTTCTAGGTCATGACCTAATTTTCGAATTTTCTAGGTCATGACCTAATTTTCGAATTTTCTAGGCTATTACCTAATTTTTGGGTTTTCTAGGTCATGACCTAATTTTTTTGGATTTTCTATGCCACCAAACCTTTTCCAGTTCTCCAGAAGACGTCAAATTCGCAACAAAAGTGTTTGCCACATAAAAACATGGAGTTGCTGAAATTCCAGATGAATCCCGACAATTCGCTTTATGAGCGTCCCCAAAAATTTTCAGAACTTTTGGACTTCTGACTCCCTTCGAGAAGACGTCAACCTCCAAATATTGATTTTCTAGTAAACATCCAGCGAGGGTGAAGATTCGAAGACGTGGTGGAGAGGTTCTGGAAGATTCAAATTTCCCGCCAAGCCGAAAATTTGAAAAATTGAAGTTTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTGAAGGAGATGCGAAATGAAAGAATCAATAAAAGCAGAAAATTCATTTTTCTGGCTGGAAAAAATGGATCTGAAACTAACTAATATTTTCAGGTTTTTTTGAAGATTTAAAAATTTATACATGTGAAAACGTGGATTTGGGAATGTATGTGTTTTTTGGCCTTTTTCTTTTT</canonical>
            <polymorphic>CCTAATTTTCGAATTTTCTAGGTCATGACCTAATTTTCGAATTTTCTAGGTCATGACCTAATTTTCGAATTTTCTAGGCTATTACCTAATTTTTGGGTTTTCTAGGTCATGACCTAATTTTTTTGGATTTTCTATGCCACCAAACCTTTTCCAGTTCTCCAGAAGACGTCAAATTCGCAACAAAAGTGTTTGCCACATAAAAACATGGAGTTGCTGAAATTCCAGATGAATCCCGACAATTCGCTTTATGAGCGTCCCCAAAAATTTTCAGAACTTTTGGACTTCTGACTCCCTTCGAGAAGACGTCAACCTCCAAATATTGATTTTCTAGTAAACATCCAGCGAGGGTGAAGATTCGAAGACGTGGTGGAGAGGTTCTGGAAGATTCAAATTTCCCGCCAAGCCGAAAATTTGAAAAATTGAAGTTTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGAMAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTGAAGGAGATGCGAAATGAAAGAATCAATAAAAGCAGAAAATTCATTTTTCTGGCTGGAAAAAATGGATCTGAAACTAACTAATATTTTCAGGTTTTTTTGAAGATTTAAAAATTTATACATGTGAAAACGTGGATTTGGGAATGTATGTGTTTTTTGGCCTTTTTCTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTACCTAAAATCCACATAAGC</pcr_primer_p1>
		<pcr_primer_p2>AGTGAGAAGTGGGCTAGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>TTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACT</canonical_amplicon>
		<polymorphic_amplicon>TTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGAMAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39627</snp_id>
        <super_contig>c014100876.Contig1</super_contig>
        <contig_pos>2981</contig_pos>
        <strand></strand>
        <context>ccaagactta[G/A]aaaactcaaa</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTA</left_flank>
        <right_flank>AAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTAGGTCATGACCTAATTTTCGAATTTTCTAGGCTATTACCTAATTTTTGGGTTTTCTAGGTCATGACCTAATTTTTTTGGATTTTCTATGCCACCAAACCTTTTCCAGTTCTCCAGAAGACGTCAAATTCGCAACAAAAGTGTTTGCCACATAAAAACATGGAGTTGCTGAAATTCCAGATGAATCCCGACAATTCGCTTTATGAGCGTCCCCAAAAATTTTCAGAACTTTTGGACTTCTGACTCCCTTCGAGAAGACGTCAACCTCCAAATATTGATTTTCTAGTAAACATCCAGCGAGGGTGAAGATTCGAAGACGTGGTGGAGAGGTTCTGGAAGATTCAAATTTCCCGCCAAGCCGAAAATTTGAAAAATTGAAGTTTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTGAAGGAGATGCGAAATGAAAGAATCAATAAAAGCAGAAAATTCATTTTTCTGGCTGGAAAAAATGGATCTGAAACTAACTAATATTTTCAGGTTTTTTTGAAGATTTAAAAATTTATACATGTGAAAACGTGGATTTGGGAATGTATGTGTTTTTTGGCCTTTTTCTTTTTTTCAGAGTTTTCGATTATTCTAAATTTTTGAAATTCTGAATT</canonical>
            <polymorphic>TTTCTAGGTCATGACCTAATTTTCGAATTTTCTAGGCTATTACCTAATTTTTGGGTTTTCTAGGTCATGACCTAATTTTTTTGGATTTTCTATGCCACCAAACCTTTTCCAGTTCTCCAGAAGACGTCAAATTCGCAACAAAAGTGTTTGCCACATAAAAACATGGAGTTGCTGAAATTCCAGATGAATCCCGACAATTCGCTTTATGAGCGTCCCCAAAAATTTTCAGAACTTTTGGACTTCTGACTCCCTTCGAGAAGACGTCAACCTCCAAATATTGATTTTCTAGTAAACATCCAGCGAGGGTGAAGATTCGAAGACGTGGTGGAGAGGTTCTGGAAGATTCAAATTTCCCGCCAAGCCGAAAATTTGAAAAATTGAAGTTTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTARAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTGAAGGAGATGCGAAATGAAAGAATCAATAAAAGCAGAAAATTCATTTTTCTGGCTGGAAAAAATGGATCTGAAACTAACTAATATTTTCAGGTTTTTTTGAAGATTTAAAAATTTATACATGTGAAAACGTGGATTTGGGAATGTATGTGTTTTTTGGCCTTTTTCTTTTTTTCAGAGTTTTCGATTATTCTAAATTTTTGAAATTCTGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>496 326 143 35</canonical_bands>
                <polymorphic_bands>639 326 35</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTACCTAAAATCCACATAAGC</pcr_primer_p1>
		<pcr_primer_p2>AGTGAGAAGTGGGCTAGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>TTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACT</canonical_amplicon>
		<polymorphic_amplicon>TTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTARAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39628</snp_id>
        <super_contig>c014100876.Contig1</super_contig>
        <contig_pos>3117</contig_pos>
        <strand></strand>
        <context>cctagaaaat[C/T]ctcttagcgt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAAT</left_flank>
        <right_flank>CTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAAAAGTGTTTGCCACATAAAAACATGGAGTTGCTGAAATTCCAGATGAATCCCGACAATTCGCTTTATGAGCGTCCCCAAAAATTTTCAGAACTTTTGGACTTCTGACTCCCTTCGAGAAGACGTCAACCTCCAAATATTGATTTTCTAGTAAACATCCAGCGAGGGTGAAGATTCGAAGACGTGGTGGAGAGGTTCTGGAAGATTCAAATTTCCCGCCAAGCCGAAAATTTGAAAAATTGAAGTTTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTGAAGGAGATGCGAAATGAAAGAATCAATAAAAGCAGAAAATTCATTTTTCTGGCTGGAAAAAATGGATCTGAAACTAACTAATATTTTCAGGTTTTTTTGAAGATTTAAAAATTTATACATGTGAAAACGTGGATTTGGGAATGTATGTGTTTTTTGGCCTTTTTCTTTTTTTCAGAGTTTTCGATTATTCTAAATTTTTGAAATTCTGAATTCTTGAAGTTTTGTTTTTCTGATCTCCCAAAAAGTATATTATTGTGATATTCACCCAATTTCATCTGATTTCACTCTGGCATATTTTACCCATAATTTTATGAGTTTATTTTCATTTTAGAAAAATGCCAAAAATTA</canonical>
            <polymorphic>AACAAAAGTGTTTGCCACATAAAAACATGGAGTTGCTGAAATTCCAGATGAATCCCGACAATTCGCTTTATGAGCGTCCCCAAAAATTTTCAGAACTTTTGGACTTCTGACTCCCTTCGAGAAGACGTCAACCTCCAAATATTGATTTTCTAGTAAACATCCAGCGAGGGTGAAGATTCGAAGACGTGGTGGAGAGGTTCTGGAAGATTCAAATTTCCCGCCAAGCCGAAAATTTGAAAAATTGAAGTTTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATYCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTGAAGGAGATGCGAAATGAAAGAATCAATAAAAGCAGAAAATTCATTTTTCTGGCTGGAAAAAATGGATCTGAAACTAACTAATATTTTCAGGTTTTTTTGAAGATTTAAAAATTTATACATGTGAAAACGTGGATTTGGGAATGTATGTGTTTTTTGGCCTTTTTCTTTTTTTCAGAGTTTTCGATTATTCTAAATTTTTGAAATTCTGAATTCTTGAAGTTTTGTTTTTCTGATCTCCCAAAAAGTATATTATTGTGATATTCACCCAATTTCATCTGATTTCACTCTGGCATATTTTACCCATAATTTTATGAGTTTATTTTCATTTTAGAAAAATGCCAAAAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTACCTAAAATCCACATAAGC</pcr_primer_p1>
		<pcr_primer_p2>AGTGAGAAGTGGGCTAGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>TTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACT</canonical_amplicon>
		<polymorphic_amplicon>TTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATYCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39629</snp_id>
        <super_contig>c014100876.Contig1</super_contig>
        <contig_pos>3147</contig_pos>
        <strand></strand>
        <context>tcgcgaattt[T/C]gaattttcta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTT</left_flank>
        <right_flank>GAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTTGCTGAAATTCCAGATGAATCCCGACAATTCGCTTTATGAGCGTCCCCAAAAATTTTCAGAACTTTTGGACTTCTGACTCCCTTCGAGAAGACGTCAACCTCCAAATATTGATTTTCTAGTAAACATCCAGCGAGGGTGAAGATTCGAAGACGTGGTGGAGAGGTTCTGGAAGATTCAAATTTCCCGCCAAGCCGAAAATTTGAAAAATTGAAGTTTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTGAAGGAGATGCGAAATGAAAGAATCAATAAAAGCAGAAAATTCATTTTTCTGGCTGGAAAAAATGGATCTGAAACTAACTAATATTTTCAGGTTTTTTTGAAGATTTAAAAATTTATACATGTGAAAACGTGGATTTGGGAATGTATGTGTTTTTTGGCCTTTTTCTTTTTTTCAGAGTTTTCGATTATTCTAAATTTTTGAAATTCTGAATTCTTGAAGTTTTGTTTTTCTGATCTCCCAAAAAGTATATTATTGTGATATTCACCCAATTTCATCTGATTTCACTCTGGCATATTTTACCCATAATTTTATGAGTTTATTTTCATTTTAGAAAAATGCCAAAAATTATATGTTTTACCCAGAAAATAATTATAAAAA</canonical>
            <polymorphic>AGTTGCTGAAATTCCAGATGAATCCCGACAATTCGCTTTATGAGCGTCCCCAAAAATTTTCAGAACTTTTGGACTTCTGACTCCCTTCGAGAAGACGTCAACCTCCAAATATTGATTTTCTAGTAAACATCCAGCGAGGGTGAAGATTCGAAGACGTGGTGGAGAGGTTCTGGAAGATTCAAATTTCCCGCCAAGCCGAAAATTTGAAAAATTGAAGTTTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTYGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTGAAGGAGATGCGAAATGAAAGAATCAATAAAAGCAGAAAATTCATTTTTCTGGCTGGAAAAAATGGATCTGAAACTAACTAATATTTTCAGGTTTTTTTGAAGATTTAAAAATTTATACATGTGAAAACGTGGATTTGGGAATGTATGTGTTTTTTGGCCTTTTTCTTTTTTTCAGAGTTTTCGATTATTCTAAATTTTTGAAATTCTGAATTCTTGAAGTTTTGTTTTTCTGATCTCCCAAAAAGTATATTATTGTGATATTCACCCAATTTCATCTGATTTCACTCTGGCATATTTTACCCATAATTTTATGAGTTTATTTTCATTTTAGAAAAATGCCAAAAATTATATGTTTTACCCAGAAAATAATTATAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTACCTAAAATCCACATAAGC</pcr_primer_p1>
		<pcr_primer_p2>AGTGAGAAGTGGGCTAGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>342</pcr_amplicon_size>
		<canonical_amplicon>TTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACT</canonical_amplicon>
		<polymorphic_amplicon>TTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTYGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39630</snp_id>
        <super_contig>c014100876.Contig1</super_contig>
        <contig_pos>3178</contig_pos>
        <strand></strand>
        <context>tagttttcca[T/C]attttYGGCT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCA</left_flank>
        <right_flank>ATTTTTGGCTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAAT</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGCTTTATGAGCGTCCCCAAAAATTTTCAGAACTTTTGGACTTCTGACTCCCTTCGAGAAGACGTCAACCTCCAAATATTGATTTTCTAGTAAACATCCAGCGAGGGTGAAGATTCGAAGACGTGGTGGAGAGGTTCTGGAAGATTCAAATTTCCCGCCAAGCCGAAAATTTGAAAAATTGAAGTTTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTGAAGGAGATGCGAAATGAAAGAATCAATAAAAGCAGAAAATTCATTTTTCTGGCTGGAAAAAATGGATCTGAAACTAACTAATATTTTCAGGTTTTTTTGAAGATTTAAAAATTTATACATGTGAAAACGTGGATTTGGGAATGTATGTGTTTTTTGGCCTTTTTCTTTTTTTCAGAGTTTTCGATTATTCTAAATTTTTGAAATTCTGAATTCTTGAAGTTTTGTTTTTCTGATCTCCCAAAAAGTATATTATTGTGATATTCACCCAATTTCATCTGATTTCACTCTGGCATATTTTACCCATAATTTTATGAGTTTATTTTCATTTTAGAAAAATGCCAAAAATTATATGTTTTACCCAGAAAATAATTATAAAAACCACCTAAAAAATGCCGAAAACATCATTTAA</canonical>
            <polymorphic>TTCGCTTTATGAGCGTCCCCAAAAATTTTCAGAACTTTTGGACTTCTGACTCCCTTCGAGAAGACGTCAACCTCCAAATATTGATTTTCTAGTAAACATCCAGCGAGGGTGAAGATTCGAAGACGTGGTGGAGAGGTTCTGGAAGATTCAAATTTCCCGCCAAGCCGAAAATTTGAAAAATTGAAGTTTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCAYATTTTTGGCTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTGAAGGAGATGCGAAATGAAAGAATCAATAAAAGCAGAAAATTCATTTTTCTGGCTGGAAAAAATGGATCTGAAACTAACTAATATTTTCAGGTTTTTTTGAAGATTTAAAAATTTATACATGTGAAAACGTGGATTTGGGAATGTATGTGTTTTTTGGCCTTTTTCTTTTTTTCAGAGTTTTCGATTATTCTAAATTTTTGAAATTCTGAATTCTTGAAGTTTTGTTTTTCTGATCTCCCAAAAAGTATATTATTGTGATATTCACCCAATTTCATCTGATTTCACTCTGGCATATTTTACCCATAATTTTATGAGTTTATTTTCATTTTAGAAAAATGCCAAAAATTATATGTTTTACCCAGAAAATAATTATAAAAACCACCTAAAAAATGCCGAAAACATCATTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTACCTAAAATCCACATAAGC</pcr_primer_p1>
		<pcr_primer_p2>CACAAAATGTGTCAATTACGA</pcr_primer_p2>
		<pcr_amplicon_size>404</pcr_amplicon_size>
		<canonical_amplicon>TTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCAYATTTTTGGCTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39631</snp_id>
        <super_contig>c014100876.Contig1</super_contig>
        <contig_pos>3184</contig_pos>
        <strand></strand>
        <context>tccayatttt[T/C]GGCTTTCTAG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTT</left_flank>
        <right_flank>GGCTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTATGAGCGTCCCCAAAAATTTTCAGAACTTTTGGACTTCTGACTCCCTTCGAGAAGACGTCAACCTCCAAATATTGATTTTCTAGTAAACATCCAGCGAGGGTGAAGATTCGAAGACGTGGTGGAGAGGTTCTGGAAGATTCAAATTTCCCGCCAAGCCGAAAATTTGAAAAATTGAAGTTTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTGAAGGAGATGCGAAATGAAAGAATCAATAAAAGCAGAAAATTCATTTTTCTGGCTGGAAAAAATGGATCTGAAACTAACTAATATTTTCAGGTTTTTTTGAAGATTTAAAAATTTATACATGTGAAAACGTGGATTTGGGAATGTATGTGTTTTTTGGCCTTTTTCTTTTTTTCAGAGTTTTCGATTATTCTAAATTTTTGAAATTCTGAATTCTTGAAGTTTTGTTTTTCTGATCTCCCAAAAAGTATATTATTGTGATATTCACCCAATTTCATCTGATTTCACTCTGGCATATTTTACCCATAATTTTATGAGTTTATTTTCATTTTAGAAAAATGCCAAAAATTATATGTTTTACCCAGAAAATAATTATAAAAACCACCTAAAAAATGCCGAAAACATCATTTAAAATGAC</canonical>
            <polymorphic>TTATGAGCGTCCCCAAAAATTTTCAGAACTTTTGGACTTCTGACTCCCTTCGAGAAGACGTCAACCTCCAAATATTGATTTTCTAGTAAACATCCAGCGAGGGTGAAGATTCGAAGACGTGGTGGAGAGGTTCTGGAAGATTCAAATTTCCCGCCAAGCCGAAAATTTGAAAAATTGAAGTTTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTYGGCTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTGAAGGAGATGCGAAATGAAAGAATCAATAAAAGCAGAAAATTCATTTTTCTGGCTGGAAAAAATGGATCTGAAACTAACTAATATTTTCAGGTTTTTTTGAAGATTTAAAAATTTATACATGTGAAAACGTGGATTTGGGAATGTATGTGTTTTTTGGCCTTTTTCTTTTTTTCAGAGTTTTCGATTATTCTAAATTTTTGAAATTCTGAATTCTTGAAGTTTTGTTTTTCTGATCTCCCAAAAAGTATATTATTGTGATATTCACCCAATTTCATCTGATTTCACTCTGGCATATTTTACCCATAATTTTATGAGTTTATTTTCATTTTAGAAAAATGCCAAAAATTATATGTTTTACCCAGAAAATAATTATAAAAACCACCTAAAAAATGCCGAAAACATCATTTAAAATGAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCANNNNNNTGG</site>
                <isoschizomers>
                    <enzyme>BstXI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTACCTAAAATCCACATAAGC</pcr_primer_p1>
		<pcr_primer_p2>CACAAAATGTGTCAATTACGA</pcr_primer_p2>
		<pcr_amplicon_size>404</pcr_amplicon_size>
		<canonical_amplicon>TTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTG</canonical_amplicon>
		<polymorphic_amplicon>TTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTYGGCTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39632</snp_id>
        <super_contig>c014100876.Contig1</super_contig>
        <contig_pos>3246</contig_pos>
        <strand>+</strand>
        <context>AACTTGTGGC[A/C]GCTCGTAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGC</left_flank>
        <right_flank>GCTCGTAATTGACACATTTTGTGAAGGAGATGCGAAATGAAAGAATCAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACCTCCAAATATTGATTTTCTAGTAAACATCCAGCGAGGGTGAAGATTCGAAGACGTGGTGGAGAGGTTCTGGAAGATTCAAATTTCCCGCCAAGCCGAAAATTTGAAAAATTGAAGTTTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTGAAGGAGATGCGAAATGAAAGAATCAATAAAAGCAGAAAATTCATTTTTCTGGCTGGAAAAAATGGATCTGAAACTAACTAATATTTTCAGGTTTTTTTGAAGATTTAAAAATTTATACATGTGAAAACGTGGATTTGGGAATGTATGTGTTTTTTGGCCTTTTTCTTTTTTTCAGAGTTTTCGATTATTCTAAATTTTTGAAATTCTGAATTCTTGAAGTTTTGTTTTTCTGATCTCCCAAAAAGTATATTATTGTGATATTCACCCAATTTCATCTGATTTCACTCTGGCATATTTTACCCATAATTTTATGAGTTTATTTTCATTTTAGAAAAATGCCAAAAATTATATGTTTTACCCAGAAAATAATTATAAAAACCACCTAAAAAATGCCGAAAACATCATTTAAAATGACTCATTGTGAATTATTCCGAAAGTCTGAAACTCAGAAATTTTCGAATTTGCAAGATTCATAAT</canonical>
            <polymorphic>AACCTCCAAATATTGATTTTCTAGTAAACATCCAGCGAGGGTGAAGATTCGAAGACGTGGTGGAGAGGTTCTGGAAGATTCAAATTTCCCGCCAAGCCGAAAATTTGAAAAATTGAAGTTTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCMGCTCGTAATTGACACATTTTGTGAAGGAGATGCGAAATGAAAGAATCAATAAAAGCAGAAAATTCATTTTTCTGGCTGGAAAAAATGGATCTGAAACTAACTAATATTTTCAGGTTTTTTTGAAGATTTAAAAATTTATACATGTGAAAACGTGGATTTGGGAATGTATGTGTTTTTTGGCCTTTTTCTTTTTTTCAGAGTTTTCGATTATTCTAAATTTTTGAAATTCTGAATTCTTGAAGTTTTGTTTTTCTGATCTCCCAAAAAGTATATTATTGTGATATTCACCCAATTTCATCTGATTTCACTCTGGCATATTTTACCCATAATTTTATGAGTTTATTTTCATTTTAGAAAAATGCCAAAAATTATATGTTTTACCCAGAAAATAATTATAAAAACCACCTAAAAAATGCCGAAAACATCATTTAAAATGACTCATTGTGAATTATTCCGAAAGTCTGAAACTCAGAAATTTTCGAATTTGCAAGATTCATAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>499 271 117 113</canonical_bands>
                <polymorphic_bands>612 271 117</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>320 128 105 96 74 53 47 42 30 25 23 21 17 8 6 5</canonical_bands>
                <polymorphic_bands>320 128 127 105 96 47 42 30 25 23 21 17 8 6 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTCTAGCCCACTTCTCACT</pcr_primer_p1>
		<pcr_primer_p2>AAAAACACATACATTCCCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTGAAGGAGATGCGAAATGAAAGAATCAATAAAAGCAGAAAATTCATTTTTCTGGCTGGAAAAAATGGATCTGAAACTAACTAATATTTTCAGGTTTTTTTGAAGATTTAAAAATTTATACATGTGAAAACGTGGATTTGGGAATGTATGTGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCMGCTCGTAATTGACACATTTTGTGAAGGAGATGCGAAATGAAAGAATCAATAAAAGCAGAAAATTCATTTTTCTGGCTGGAAAAAATGGATCTGAAACTAACTAATATTTTCAGGTTTTTTTGAAGATTTAAAAATTTATACATGTGAAAACGTGGATTTGGGAATGTATGTGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39633</snp_id>
        <super_contig>c014100876.Contig1</super_contig>
        <contig_pos>3270</contig_pos>
        <strand>+</strand>
        <context>ACATTTTGTG[A/G]AGGAGATGCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTG</left_flank>
        <right_flank>AGGAGATGCGAAATGAAAGAATCAATAAAAGCAGAAAATTCATTTTTCTG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAACATCCAGCGAGGGTGAAGATTCGAAGACGTGGTGGAGAGGTTCTGGAAGATTCAAATTTCCCGCCAAGCCGAAAATTTGAAAAATTGAAGTTTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTGAAGGAGATGCGAAATGAAAGAATCAATAAAAGCAGAAAATTCATTTTTCTGGCTGGAAAAAATGGATCTGAAACTAACTAATATTTTCAGGTTTTTTTGAAGATTTAAAAATTTATACATGTGAAAACGTGGATTTGGGAATGTATGTGTTTTTTGGCCTTTTTCTTTTTTTCAGAGTTTTCGATTATTCTAAATTTTTGAAATTCTGAATTCTTGAAGTTTTGTTTTTCTGATCTCCCAAAAAGTATATTATTGTGATATTCACCCAATTTCATCTGATTTCACTCTGGCATATTTTACCCATAATTTTATGAGTTTATTTTCATTTTAGAAAAATGCCAAAAATTATATGTTTTACCCAGAAAATAATTATAAAAACCACCTAAAAAATGCCGAAAACATCATTTAAAATGACTCATTGTGAATTATTCCGAAAGTCTGAAACTCAGAAATTTTCGAATTTGCAAGATTCATAATTCTGAACCTTTGATATTTAGAAAT</canonical>
            <polymorphic>TAAACATCCAGCGAGGGTGAAGATTCGAAGACGTGGTGGAGAGGTTCTGGAAGATTCAAATTTCCCGCCAAGCCGAAAATTTGAAAAATTGAAGTTTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTGRAGGAGATGCGAAATGAAAGAATCAATAAAAGCAGAAAATTCATTTTTCTGGCTGGAAAAAATGGATCTGAAACTAACTAATATTTTCAGGTTTTTTTGAAGATTTAAAAATTTATACATGTGAAAACGTGGATTTGGGAATGTATGTGTTTTTTGGCCTTTTTCTTTTTTTCAGAGTTTTCGATTATTCTAAATTTTTGAAATTCTGAATTCTTGAAGTTTTGTTTTTCTGATCTCCCAAAAAGTATATTATTGTGATATTCACCCAATTTCATCTGATTTCACTCTGGCATATTTTACCCATAATTTTATGAGTTTATTTTCATTTTAGAAAAATGCCAAAAATTATATGTTTTACCCAGAAAATAATTATAAAAACCACCTAAAAAATGCCGAAAACATCATTTAAAATGACTCATTGTGAATTATTCCGAAAGTCTGAAACTCAGAAATTTTCGAATTTGCAAGATTCATAATTCTGAACCTTTGATATTTAGAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTCTAGCCCACTTCTCACT</pcr_primer_p1>
		<pcr_primer_p2>AAAAACACATACATTCCCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTGAAGGAGATGCGAAATGAAAGAATCAATAAAAGCAGAAAATTCATTTTTCTGGCTGGAAAAAATGGATCTGAAACTAACTAATATTTTCAGGTTTTTTTGAAGATTTAAAAATTTATACATGTGAAAACGTGGATTTGGGAATGTATGTGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTGRAGGAGATGCGAAATGAAAGAATCAATAAAAGCAGAAAATTCATTTTTCTGGCTGGAAAAAATGGATCTGAAACTAACTAATATTTTCAGGTTTTTTTGAAGATTTAAAAATTTATACATGTGAAAACGTGGATTTGGGAATGTATGTGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39634</snp_id>
        <super_contig>c014100876.Contig1</super_contig>
        <contig_pos>3289</contig_pos>
        <strand>+</strand>
        <context>CGAAATGAAA[A/G]AATCAATAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGTGGCAGCTCGTAATTGACACATTTTGTGAAGGAGATGCGAAATGAAA</left_flank>
        <right_flank>AATCAATAAAAGCAGAAAATTCATTTTTCTGGCTGGAAAAAATGGATCTG</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGATTCGAAGACGTGGTGGAGAGGTTCTGGAAGATTCAAATTTCCCGCCAAGCCGAAAATTTGAAAAATTGAAGTTTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTGAAGGAGATGCGAAATGAAAGAATCAATAAAAGCAGAAAATTCATTTTTCTGGCTGGAAAAAATGGATCTGAAACTAACTAATATTTTCAGGTTTTTTTGAAGATTTAAAAATTTATACATGTGAAAACGTGGATTTGGGAATGTATGTGTTTTTTGGCCTTTTTCTTTTTTTCAGAGTTTTCGATTATTCTAAATTTTTGAAATTCTGAATTCTTGAAGTTTTGTTTTTCTGATCTCCCAAAAAGTATATTATTGTGATATTCACCCAATTTCATCTGATTTCACTCTGGCATATTTTACCCATAATTTTATGAGTTTATTTTCATTTTAGAAAAATGCCAAAAATTATATGTTTTACCCAGAAAATAATTATAAAAACCACCTAAAAAATGCCGAAAACATCATTTAAAATGACTCATTGTGAATTATTCCGAAAGTCTGAAACTCAGAAATTTTCGAATTTGCAAGATTCATAATTCTGAACCTTTGATATTTAGAAATTCAGAATTTCAGAAACTGT</canonical>
            <polymorphic>AAGATTCGAAGACGTGGTGGAGAGGTTCTGGAAGATTCAAATTTCCCGCCAAGCCGAAAATTTGAAAAATTGAAGTTTTTACCTAAAATCCACATAAGCGTCTTTGTAGAAGGTGACTGGGAAGGAGGAGTTGATTGGTTCACTTCTGACAATGTGAAATTTTGAAAATTGGGTTTCTAGGCCAAGACTTAGAAAACTCAAAATTTGGAAAACTAGTTCGTGACCTAGCTAACTCAAAATCGTGGCCTAGAAACCCTAAAATTTGGAAAACCAGGCCATGACCTAGAAAACCATAACTTACCAAAACTAGGTCATGGCCTAGAAAATCCTCTTAGCGTGGCCTAGCTTCGCGAATTTTGAATTTTCTAAGCCATGGCCTAGTTTTCCATATTTTTGGCTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTGAAGGAGATGCGAAATGAAARAATCAATAAAAGCAGAAAATTCATTTTTCTGGCTGGAAAAAATGGATCTGAAACTAACTAATATTTTCAGGTTTTTTTGAAGATTTAAAAATTTATACATGTGAAAACGTGGATTTGGGAATGTATGTGTTTTTTGGCCTTTTTCTTTTTTTCAGAGTTTTCGATTATTCTAAATTTTTGAAATTCTGAATTCTTGAAGTTTTGTTTTTCTGATCTCCCAAAAAGTATATTATTGTGATATTCACCCAATTTCATCTGATTTCACTCTGGCATATTTTACCCATAATTTTATGAGTTTATTTTCATTTTAGAAAAATGCCAAAAATTATATGTTTTACCCAGAAAATAATTATAAAAACCACCTAAAAAATGCCGAAAACATCATTTAAAATGACTCATTGTGAATTATTCCGAAAGTCTGAAACTCAGAAATTTTCGAATTTGCAAGATTCATAATTCTGAACCTTTGATATTTAGAAATTCAGAATTTCAGAAACTGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>466 393 55 52 31 3</canonical_bands>
                <polymorphic_bands>859 55 52 31 3</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>466 448 52 31 3</canonical_bands>
                <polymorphic_bands>914 52 31 3</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTCTAGCCCACTTCTCACT</pcr_primer_p1>
		<pcr_primer_p2>AAAAACACATACATTCCCAAAT</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTGAAGGAGATGCGAAATGAAAGAATCAATAAAAGCAGAAAATTCATTTTTCTGGCTGGAAAAAATGGATCTGAAACTAACTAATATTTTCAGGTTTTTTTGAAGATTTAAAAATTTATACATGTGAAAACGTGGATTTGGGAATGTATGTGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTCTAGCCCACTTCTCACTTTTCATCCAGGATCCGCAAATGGGGTGGAACTTGTGGCAGCTCGTAATTGACACATTTTGTGAAGGAGATGCGAAATGAAARAATCAATAAAAGCAGAAAATTCATTTTTCTGGCTGGAAAAAATGGATCTGAAACTAACTAATATTTTCAGGTTTTTTTGAAGATTTAAAAATTTATACATGTGAAAACGTGGATTTGGGAATGTATGTGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39635</snp_id>
        <super_contig>c014101066.Contig1</super_contig>
        <contig_pos>7457</contig_pos>
        <strand></strand>
        <context>attctagaaa[C/A]tttggtgaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TTCCTAGGTAAACTGAAATATTCTGGAGAAAATTCAGAAAATTCTAGAAA</left_flank>
        <right_flank>TTTGGTGAAAATTTGAACGTTCTAGAGCTTCTAGAACTCGAGATACAGGC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGAAATTGAAAATTGGGTCATTCTACAAGATTTTTAATTTCCTATATTTTCAACACTTCAAAATTTATTATCGTGATCTCCTATTCTCTAAAAACAGGGTGTCAAAGATCTTATCAGCAAAATCGTTGAATCACTAATCAATCGAATCGTCAAGAAAAAGCAGTATTCGATCAAAACAACTTGAGTTTTTCGTTCTCCACTTTCAGTCAAAATAGGATTCATTTCTATTAAAAGAGGTATGGGAAAATTCTGGAATTTTCTGGAATTCTGGAACATTTTTCCAGAACGAAAACATATAAAATGGGGTCGAAAGATATCGGATCAAAGGAGCTGTTCACACAATCGCTTTACGCCCAATCGGCGCCCGTCGGACCAAAGTCCAAAGAGAATATGAGTATGGCGCCGAAGAGTCTTCCAGCAACATCCGCTCCAAATGCCAATTCGTCGTTTCCTAGGTAAACTGAAATATTCTGGAGAAAATTCAGAAAATTCTAGAAACTTTGGTGAAAATTTGAACGTTCTAGAGCTTCTAGAACTCGAGATACAGGCGTTTAAAGTTTCAGGAGGCGAGAGAGCGTGGGAAGGGAGATTTTTGAGTTTCTGAGATTCTGAGATTCCAAGATTCTCATACTTGTAACGGGCCGGGCCCGTCATTTCACTAGTTTTGAAAATTTCAAAAACACATAAGGGGGACCCTTATGTGATTTTTTTTCGACCAACATTTTTTTTCGAGATTCTGAGATTCTGAGATTCTAAGGTTCTAAGATTCAAGATTCTGAAATTCAGAAATTCTGAGATTCCAAGATTTTGATATTCTGAGATTCTGAGATCCTGAGATTCTGAAATTCCGAAATACTGAGATTCTCAGACTCTGGGATACTGAGATTCTGACATTCTGAGATTCTTAGATTCTGATATTCTGAGACTCTGAGATCCTGAGATTCTGANNNNNNNNNNGTCTGCGCTCTCCTCCTTTTCTCACTCTCTCGCCTCCGAAAC</canonical>
            <polymorphic>AGGAAATTGAAAATTGGGTCATTCTACAAGATTTTTAATTTCCTATATTTTCAACACTTCAAAATTTATTATCGTGATCTCCTATTCTCTAAAAACAGGGTGTCAAAGATCTTATCAGCAAAATCGTTGAATCACTAATCAATCGAATCGTCAAGAAAAAGCAGTATTCGATCAAAACAACTTGAGTTTTTCGTTCTCCACTTTCAGTCAAAATAGGATTCATTTCTATTAAAAGAGGTATGGGAAAATTCTGGAATTTTCTGGAATTCTGGAACATTTTTCCAGAACGAAAACATATAAAATGGGGTCGAAAGATATCGGATCAAAGGAGCTGTTCACACAATCGCTTTACGCCCAATCGGCGCCCGTCGGACCAAAGTCCAAAGAGAATATGAGTATGGCGCCGAAGAGTCTTCCAGCAACATCCGCTCCAAATGCCAATTCGTCGTTTCCTAGGTAAACTGAAATATTCTGGAGAAAATTCAGAAAATTCTAGAAAMTTTGGTGAAAATTTGAACGTTCTAGAGCTTCTAGAACTCGAGATACAGGCGTTTAAAGTTTCAGGAGGCGAGAGAGCGTGGGAAGGGAGATTTTTGAGTTTCTGAGATTCTGAGATTCCAAGATTCTCATACTTGTAACGGGCCGGGCCCGTCATTTCACTAGTTTTGAAAATTTCAAAAACACATAAGGGGGACCCTTATGTGATTTTTTTTCGACCAACATTTTTTTTCGAGATTCTGAGATTCTGAGATTCTAAGGTTCTAAGATTCAAGATTCTGAAATTCAGAAATTCTGAGATTCCAAGATTTTGATATTCTGAGATTCTGAGATCCTGAGATTCTGAAATTCCGAAATACTGAGATTCTCAGACTCTGGGATACTGAGATTCTGACATTCTGAGATTCTTAGATTCTGATATTCTGAGACTCTGAGATCCTGAGATTCTGANNNNNNNNNNGTCTGCGCTCTCCTCCTTTTCTCACTCTCTCGCCTCCGAAAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACCAAAGTCCAAAGAGAATATG</pcr_primer_p1>
		<pcr_primer_p2>CTCAGAATCTCAGAAACTCAAAA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>ACCAAAGTCCAAAGAGAATATGAGTATGGCGCCGAAGAGTCTTCCAGCAACATCCGCTCCAAATGCCAATTCGTCGTTTCCTAGGTAAACTGAAATATTCTGGAGAAAATTCAGAAAATTCTAGAAACTTTGGTGAAAATTTGAACGTTCTAGAGCTTCTAGAACTCGAGATACAGGCGTTTAAAGTTTCAGGAGGCGAGAGAGCGTGGGAAGGGAGATTTTTGAGTTTCTGAGATTCTGAG</canonical_amplicon>
		<polymorphic_amplicon>ACCAAAGTCCAAAGAGAATATGAGTATGGCGCCGAAGAGTCTTCCAGCAACATCCGCTCCAAATGCCAATTCGTCGTTTCCTAGGTAAACTGAAATATTCTGGAGAAAATTCAGAAAATTCTAGAAAMTTTGGTGAAAATTTGAACGTTCTAGAGCTTCTAGAACTCGAGATACAGGCGTTTAAAGTTTCAGGAGGCGAGAGAGCGTGGGAAGGGAGATTTTTGAGTTTCTGAGATTCTGAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39636</snp_id>
        <super_contig>c014101066.Contig1</super_contig>
        <contig_pos>10425</contig_pos>
        <strand></strand>
        <context>actgataaaa[A/T]acttgtcatt</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTATCTCGGCTCATATGAAAAATAACAAAATATTGTTAACTGATAAAA</left_flank>
        <right_flank>ACTTGTCATTTTATCAGCTACATTTTATTAGTTGACCACTTTTTGATATC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAGCTATTCTACAACTCGAGATACAAGCTGTTGACGTTTTGCAGGCGAGAGAGTGGAGAAAAGAAGGAGTGCGCGCAGACGAGGAGACTGTCTGCGCCCTCCTCTTTCCCCGCGCTCTCTCGCTTCTTGAAACTTCAATCGACTATATCTCGGGTCCCAGATAAGCTAGAAAGTTGGTTTTTTGACTGAAATGTGCAGTTTAAAGTGGAAAATTCGAATTTACATTAAACTTAAACGAAAAATTAAATTTTCCAGAGACATCGCCGCGCGCAACTGTTTGCTCCATGAGGACGTTGTCAAAATCACGGACTTTGGTCTTTCCCGTACTGGACCATGTTACAAATTAAGAACGACATGCAAACTGCCAGTGAAATGGTTGGCTCCGGAGACATTGTCCACGCTCACATTCACCTACGCAACCGATGTTTATAGGTACTACTGGAGCTCAATTATCTCGGCTCATATGAAAAATAACAAAATATTGTTAACTGATAAAAAACTTGTCATTTTATCAGCTACATTTTATTAGTTGACCACTTTTTGATATCTTTTATGGGAACCATGATAAATAAGATCAAACAGATTGAAGTCGCCGGGGAAGAAGGGTGTTTGGTTGCTTTGAGCCCAATTATCTTGGCTCCTATTAGAGATATTAAAATTTTGCCAATTGACAAAATGTTTGCCATGATTAAAACTACATTTTCTTACTTGACAAATTTTTGATATCTTTCATAGAAAACGAATAACGCGCAGCTCAGACGATCAGACGGTGCCAGCAGACATGTCTACCTTGCGCTCAATTATCTCGGCCCCTGTAACAGATATCAAAAAATTGTCAACTGATAAAATGTGTCATGATATCGGGTACATTTTTTTAGTTGACAATTTTTTGATATCTTTTAAAAGAACCGAGATAATTAAATTTAAAGTAGCGACAAGTTCAAGCGAAGTTCAAGCGAGGTTCAAATTCAATATTTTTAATTTTTCAAAAAACAAAA</canonical>
            <polymorphic>TCTAGCTATTCTACAACTCGAGATACAAGCTGTTGACGTTTTGCAGGCGAGAGAGTGGAGAAAAGAAGGAGTGCGCGCAGACGAGGAGACTGTCTGCGCCCTCCTCTTTCCCCGCGCTCTCTCGCTTCTTGAAACTTCAATCGACTATATCTCGGGTCCCAGATAAGCTAGAAAGTTGGTTTTTTGACTGAAATGTGCAGTTTAAAGTGGAAAATTCGAATTTACATTAAACTTAAACGAAAAATTAAATTTTCCAGAGACATCGCCGCGCGCAACTGTTTGCTCCATGAGGACGTTGTCAAAATCACGGACTTTGGTCTTTCCCGTACTGGACCATGTTACAAATTAAGAACGACATGCAAACTGCCAGTGAAATGGTTGGCTCCGGAGACATTGTCCACGCTCACATTCACCTACGCAACCGATGTTTATAGGTACTACTGGAGCTCAATTATCTCGGCTCATATGAAAAATAACAAAATATTGTTAACTGATAAAAWACTTGTCATTTTATCAGCTACATTTTATTAGTTGACCACTTTTTGATATCTTTTATGGGAACCATGATAAATAAGATCAAACAGATTGAAGTCGCCGGGGAAGAAGGGTGTTTGGTTGCTTTGAGCCCAATTATCTTGGCTCCTATTAGAGATATTAAAATTTTGCCAATTGACAAAATGTTTGCCATGATTAAAACTACATTTTCTTACTTGACAAATTTTTGATATCTTTCATAGAAAACGAATAACGCGCAGCTCAGACGATCAGACGGTGCCAGCAGACATGTCTACCTTGCGCTCAATTATCTCGGCCCCTGTAACAGATATCAAAAAATTGTCAACTGATAAAATGTGTCATGATATCGGGTACATTTTTTTAGTTGACAATTTTTTGATATCTTTTAAAAGAACCGAGATAATTAAATTTAAAGTAGCGACAAGTTCAAGCGAAGTTCAAGCGAGGTTCAAATTCAATATTTTTAATTTTTCAAAAAACAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GCAACCGATGTTTATAGGTACT</pcr_primer_p1>
		<pcr_primer_p2>AAGACTTCGTAGCATGTGATG</pcr_primer_p2>
		<pcr_amplicon_size>629</pcr_amplicon_size>
		<canonical_amplicon>GCAACCGATGTTTATAGGTACTACTGGAGCTCAATTATCTCGGCTCATATGAAAAATAACAAAATATTGTTAACTGATAAAAAACTTGTCATTTTATCAGCTA</canonical_amplicon>
		<polymorphic_amplicon>GCAACCGATGTTTATAGGTACTACTGGAGCTCAATTATCTCGGCTCATATGAAAAATAACAAAATATTGTTAACTGATAAAAWACTTGTCATTTTATCAGCTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39637</snp_id>
        <super_contig>c014200791.Contig3</super_contig>
        <contig_pos>7859</contig_pos>
        <strand></strand>
        <context>cttgcatagg[G/A]gccaaattat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGATATCATAAACATTTTATCGTTGGAATATTTTTGATATCTTGCATAGG</left_flank>
        <right_flank>GCCAAATTATTAAAATTAGCTCGAACTTGATAACTCTTGTATTACAGGTT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTATATCCTAATTGGATTTTAAAAGACGAAAACTAGAAAATTCTTGGAACTCACGTCAGAGAAACAATTCAGAGAAACAAATAAAGTGAGATGACGACTTAGATGTCGAATTGAAATTCGTAATAAGTTTTCAAAATTCTGATAATTTTGAAACATCAGTTATTATTTTTTGAATTTTCTAAAAATCATATTTTTCGAAATAAATCACTGTGACCTATTTTTTATCCGAATTTCCCTCCAAAAATGAGTCATAAGACTCCGATTCAATTACCAGGTAGTATTTATTTTTTCGTTTTAAATAATTTTTGATCAGTAATCTATGACTTAGGTTTTTATGATATGTGATTCAAAACCTTTAATAGAAGGGCACTTTGAACTTTCGAGCTAATTTTTTTCGGTTCCTGTCAAAGATATCAAACAGTTGTCAACTGATAAATTGTTTATCATGATATCATAAACATTTTATCGTTGGAATATTTTTGATATCTTGCATAGGGGCCAAATTATTAAAATTAGCTCGAACTTGATAACTCTTGTATTACAGGTTCTACGGTACAAGTTTCTGATTGTCTTTAGTTAAATCTTTCAATTAATTTCGCCAAGGAACGGATAGATTGTAATCAGTTAATACTTTTTTAATCATGGAATTTGAAAAACAGTATTTATTTTTCTAAATCTTTCAGATATATTTTCAAATTATTAAGAAAAAATGTTGTTTAAAGATTACTTTTTTCTTTGAAATTTCAGAATTTTAATTATTTATCTCAAGCTGTAACTAGGGTTTCCATTTGGGCAGGTGAAGAAGCGGGCTACCCGCTACCCACCCGGGGGGCTCCCACCCGTGGCTCCCCGCGGCCCCTCGCAATTAAATGCGTGTGAATTTTAATAAAATTTTTAAGGATAATCACGTATTTTCCATGAAAAACTGATTTTCTCAAATCAAAAAACTACAAAAAAGATAATATTTTCCTCACGTAATTATTCGAGGGGGGTCAAC</canonical>
            <polymorphic>TTTCTATATCCTAATTGGATTTTAAAAGACGAAAACTAGAAAATTCTTGGAACTCACGTCAGAGAAACAATTCAGAGAAACAAATAAAGTGAGATGACGACTTAGATGTCGAATTGAAATTCGTAATAAGTTTTCAAAATTCTGATAATTTTGAAACATCAGTTATTATTTTTTGAATTTTCTAAAAATCATATTTTTCGAAATAAATCACTGTGACCTATTTTTTATCCGAATTTCCCTCCAAAAATGAGTCATAAGACTCCGATTCAATTACCAGGTAGTATTTATTTTTTCGTTTTAAATAATTTTTGATCAGTAATCTATGACTTAGGTTTTTATGATATGTGATTCAAAACCTTTAATAGAAGGGCACTTTGAACTTTCGAGCTAATTTTTTTCGGTTCCTGTCAAAGATATCAAACAGTTGTCAACTGATAAATTGTTTATCATGATATCATAAACATTTTATCGTTGGAATATTTTTGATATCTTGCATAGGRGCCAAATTATTAAAATTAGCTCGAACTTGATAACTCTTGTATTACAGGTTCTACGGTACAAGTTTCTGATTGTCTTTAGTTAAATCTTTCAATTAATTTCGCCAAGGAACGGATAGATTGTAATCAGTTAATACTTTTTTAATCATGGAATTTGAAAAACAGTATTTATTTTTCTAAATCTTTCAGATATATTTTCAAATTATTAAGAAAAAATGTTGTTTAAAGATTACTTTTTTCTTTGAAATTTCAGAATTTTAATTATTTATCTCAAGCTGTAACTAGGGTTTCCATTTGGGCAGGTGAAGAAGCGGGCTACCCGCTACCCACCCGGGGGGCTCCCACCCGTGGCTCCCCGCGGCCCCTCGCAATTAAATGCGTGTGAATTTTAATAAAATTTTTAAGGATAATCACGTATTTTCCATGAAAAACTGATTTTCTCAAATCAAAAAACTACAAAAAAGATAATATTTTCCTCACGTAATTATTCGAGGGGGGTCAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>499 358 143</canonical_bands>
                <polymorphic_bands>857 143</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>501 357 142</canonical_bands>
                <polymorphic_bands>858 142</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>387 253 142 114 40 23 18 13 10</canonical_bands>
                <polymorphic_bands>387 253 142 132 40 23 13 10</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGACTTAGGTTTTTATGATATGTGA</pcr_primer_p1>
		<pcr_primer_p2>GCGAAATTAATTGAAAGATTTAAC</pcr_primer_p2>
		<pcr_amplicon_size>279</pcr_amplicon_size>
		<canonical_amplicon>TGACTTAGGTTTTTATGATATGTGATTCAAAACCTTTAATAGAAGGGCACTTTGAACTTTCGAGCTAATTTTTTTCGGTTCCTGTCAAAGATATCAAACAGTTGTCAACTGATAAATTGTTTATCATGATATCATAAACATTTTATCGTTGGAATATTTTTGATATCTTGCATAGGGGCCAAATTATTAAAATTAGCTCGAACTTGATAACTCTTGTATTACAGGTTCTACGGTACAAGTTTCTGATTGTCTTTAGTTAAATCTTTCAATTAATTTCGC</canonical_amplicon>
		<polymorphic_amplicon>TGACTTAGGTTTTTATGATATGTGATTCAAAACCTTTAATAGAAGGGCACTTTGAACTTTCGAGCTAATTTTTTTCGGTTCCTGTCAAAGATATCAAACAGTTGTCAACTGATAAATTGTTTATCATGATATCATAAACATTTTATCGTTGGAATATTTTTGATATCTTGCATAGGRGCCAAATTATTAAAATTAGCTCGAACTTGATAACTCTTGTATTACAGGTTCTACGGTACAAGTTTCTGATTGTCTTTAGTTAAATCTTTCAATTAATTTCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39638</snp_id>
        <super_contig>c014200791.Contig3</super_contig>
        <contig_pos>7893</contig_pos>
        <strand></strand>
        <context>aacttgataa[C/T]tcttgtatta</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGATATCTTGCATAGGGGCCAAATTATTAAAATTAGCTCGAACTTGATAA</left_flank>
        <right_flank>TCTTGTATTACAGGTTCTACGGTACAAGTTTCTGATTGTCTTTAGTTAAA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTAGAAAATTCTTGGAACTCACGTCAGAGAAACAATTCAGAGAAACAAATAAAGTGAGATGACGACTTAGATGTCGAATTGAAATTCGTAATAAGTTTTCAAAATTCTGATAATTTTGAAACATCAGTTATTATTTTTTGAATTTTCTAAAAATCATATTTTTCGAAATAAATCACTGTGACCTATTTTTTATCCGAATTTCCCTCCAAAAATGAGTCATAAGACTCCGATTCAATTACCAGGTAGTATTTATTTTTTCGTTTTAAATAATTTTTGATCAGTAATCTATGACTTAGGTTTTTATGATATGTGATTCAAAACCTTTAATAGAAGGGCACTTTGAACTTTCGAGCTAATTTTTTTCGGTTCCTGTCAAAGATATCAAACAGTTGTCAACTGATAAATTGTTTATCATGATATCATAAACATTTTATCGTTGGAATATTTTTGATATCTTGCATAGGGGCCAAATTATTAAAATTAGCTCGAACTTGATAACTCTTGTATTACAGGTTCTACGGTACAAGTTTCTGATTGTCTTTAGTTAAATCTTTCAATTAATTTCGCCAAGGAACGGATAGATTGTAATCAGTTAATACTTTTTTAATCATGGAATTTGAAAAACAGTATTTATTTTTCTAAATCTTTCAGATATATTTTCAAATTATTAAGAAAAAATGTTGTTTAAAGATTACTTTTTTCTTTGAAATTTCAGAATTTTAATTATTTATCTCAAGCTGTAACTAGGGTTTCCATTTGGGCAGGTGAAGAAGCGGGCTACCCGCTACCCACCCGGGGGGCTCCCACCCGTGGCTCCCCGCGGCCCCTCGCAATTAAATGCGTGTGAATTTTAATAAAATTTTTAAGGATAATCACGTATTTTCCATGAAAAACTGATTTTCTCAAATCAAAAAACTACAAAAAAGATAATATTTTCCTCACGTAATTATTCGAGGGGGGTCAACGGGGGGCCGCGGGGGGTGAGCCCCCCGGGTGGGT</canonical>
            <polymorphic>ACTAGAAAATTCTTGGAACTCACGTCAGAGAAACAATTCAGAGAAACAAATAAAGTGAGATGACGACTTAGATGTCGAATTGAAATTCGTAATAAGTTTTCAAAATTCTGATAATTTTGAAACATCAGTTATTATTTTTTGAATTTTCTAAAAATCATATTTTTCGAAATAAATCACTGTGACCTATTTTTTATCCGAATTTCCCTCCAAAAATGAGTCATAAGACTCCGATTCAATTACCAGGTAGTATTTATTTTTTCGTTTTAAATAATTTTTGATCAGTAATCTATGACTTAGGTTTTTATGATATGTGATTCAAAACCTTTAATAGAAGGGCACTTTGAACTTTCGAGCTAATTTTTTTCGGTTCCTGTCAAAGATATCAAACAGTTGTCAACTGATAAATTGTTTATCATGATATCATAAACATTTTATCGTTGGAATATTTTTGATATCTTGCATAGGGGCCAAATTATTAAAATTAGCTCGAACTTGATAAYTCTTGTATTACAGGTTCTACGGTACAAGTTTCTGATTGTCTTTAGTTAAATCTTTCAATTAATTTCGCCAAGGAACGGATAGATTGTAATCAGTTAATACTTTTTTAATCATGGAATTTGAAAAACAGTATTTATTTTTCTAAATCTTTCAGATATATTTTCAAATTATTAAGAAAAAATGTTGTTTAAAGATTACTTTTTTCTTTGAAATTTCAGAATTTTAATTATTTATCTCAAGCTGTAACTAGGGTTTCCATTTGGGCAGGTGAAGAAGCGGGCTACCCGCTACCCACCCGGGGGGCTCCCACCCGTGGCTCCCCGCGGCCCCTCGCAATTAAATGCGTGTGAATTTTAATAAAATTTTTAAGGATAATCACGTATTTTCCATGAAAAACTGATTTTCTCAAATCAAAAAACTACAAAAAAGATAATATTTTCCTCACGTAATTATTCGAGGGGGGTCAACGGGGGGCCGCGGGGGGTGAGCCCCCCGGGTGGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGACTTAGGTTTTTATGATATGTGA</pcr_primer_p1>
		<pcr_primer_p2>GCGAAATTAATTGAAAGATTTAAC</pcr_primer_p2>
		<pcr_amplicon_size>279</pcr_amplicon_size>
		<canonical_amplicon>TGACTTAGGTTTTTATGATATGTGATTCAAAACCTTTAATAGAAGGGCACTTTGAACTTTCGAGCTAATTTTTTTCGGTTCCTGTCAAAGATATCAAACAGTTGTCAACTGATAAATTGTTTATCATGATATCATAAACATTTTATCGTTGGAATATTTTTGATATCTTGCATAGGGGCCAAATTATTAAAATTAGCTCGAACTTGATAACTCTTGTATTACAGGTTCTACGGTACAAGTTTCTGATTGTCTTTAGTTAAATCTTTCAATTAATTTCGC</canonical_amplicon>
		<polymorphic_amplicon>TGACTTAGGTTTTTATGATATGTGATTCAAAACCTTTAATAGAAGGGCACTTTGAACTTTCGAGCTAATTTTTTTCGGTTCCTGTCAAAGATATCAAACAGTTGTCAACTGATAAATTGTTTATCATGATATCATAAACATTTTATCGTTGGAATATTTTTGATATCTTGCATAGGGGCCAAATTATTAAAATTAGCTCGAACTTGATAAYTCTTGTATTACAGGTTCTACGGTACAAGTTTCTGATTGTCTTTAGTTAAATCTTTCAATTAATTTCGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39639</snp_id>
        <super_contig>c014200791.Contig3</super_contig>
        <contig_pos>9917</contig_pos>
        <strand></strand>
        <context>acaagcctag[G/A]tagaaaattt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TCAAGTTCCCGATCACTTTGAAAGTTTTGGAAAGTGTAAAACAAGCCTAG</left_flank>
        <right_flank>TAGAAAATTTAGCATTCATAGAATTTTTGAAAATTCCTAGATTTTCCGTT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACACATAATTTAAAAAATGGAGTTGACAACTCTTCAATGCCCCGTAACTGCGCATCCAATAACAGATAGATCACAAAACAATAAAATGGTAAAGTGAAGCAAAAAATCGAGAATTGAATAGTTTCAACAACTTTTTCAAGCGTTTCATCCAATGGTTCATCGATTTGGACAATGAGAGGGAGCGAATTGAAATCGGAAATCATTCATAAATGATTGCTGAATTAAAACCAAATTATATTAAAGCAGGAATAGAAGAAAGAAGTTCAAAACCGTATGAAAATTTAGTGAAACGGGGAGAAAGATGTGATTGTTTAAAAAAACCCTTCACGACCATAGTACCCTGGACCTTCTAGTCTACTACAGTACCGGTCAATAAGATATAAGAAAACATATTTTTCAGATAGTTTTCAGCCATTTTGACTATTTTCAGGAGTCTGGAGCTCGACTGTCAAGTTCCCGATCACTTTGAAAGTTTTGGAAAGTGTAAAACAAGCCTAGGTAGAAAATTTAGCATTCATAGAATTTTTGAAAATTCCTAGATTTTCCGTTTTGTCGATTTCTGAAAGACACCCCTTTTTTCGCAGGTTTTCGTACTGGAGTTTACTTTAATGTACTGGAACTTGTGCAACATTTTTGAAAACTGAATTTCTGAGGAGGTATGCCAAATGGAAGCGCTTCCCTCTTTAATGTTTCTTATCTCTAGAACTCAACTTTTAAGAAAAGGTCTCAACTACAAAAATGAAGATCTAGTCAGTTTAGTATAGTATGAAATTTTCAGACAAATCTATAAAAATTGAGCTAGTGTTTCAGACAGCCAAAAAAATCATTTTTGAGCAAGACTGCAAATTTTTCGCACATTTTGAAATCGTGCTGTCTCTCTCTAGGAGTTGATTTTGCAGTAAAGTTGTTAGTTAAAAAAAAGCTCTAGGTTTGTTTAGGATACACTAAAAATTTCAGAAGAATCAGACAATTTTCACCTAGTTTTTTGAACCATCAAAA</canonical>
            <polymorphic>AACACATAATTTAAAAAATGGAGTTGACAACTCTTCAATGCCCCGTAACTGCGCATCCAATAACAGATAGATCACAAAACAATAAAATGGTAAAGTGAAGCAAAAAATCGAGAATTGAATAGTTTCAACAACTTTTTCAAGCGTTTCATCCAATGGTTCATCGATTTGGACAATGAGAGGGAGCGAATTGAAATCGGAAATCATTCATAAATGATTGCTGAATTAAAACCAAATTATATTAAAGCAGGAATAGAAGAAAGAAGTTCAAAACCGTATGAAAATTTAGTGAAACGGGGAGAAAGATGTGATTGTTTAAAAAAACCCTTCACGACCATAGTACCCTGGACCTTCTAGTCTACTACAGTACCGGTCAATAAGATATAAGAAAACATATTTTTCAGATAGTTTTCAGCCATTTTGACTATTTTCAGGAGTCTGGAGCTCGACTGTCAAGTTCCCGATCACTTTGAAAGTTTTGGAAAGTGTAAAACAAGCCTAGRTAGAAAATTTAGCATTCATAGAATTTTTGAAAATTCCTAGATTTTCCGTTTTGTCGATTTCTGAAAGACACCCCTTTTTTCGCAGGTTTTCGTACTGGAGTTTACTTTAATGTACTGGAACTTGTGCAACATTTTTGAAAACTGAATTTCTGAGGAGGTATGCCAAATGGAAGCGCTTCCCTCTTTAATGTTTCTTATCTCTAGAACTCAACTTTTAAGAAAAGGTCTCAACTACAAAAATGAAGATCTAGTCAGTTTAGTATAGTATGAAATTTTCAGACAAATCTATAAAAATTGAGCTAGTGTTTCAGACAGCCAAAAAAATCATTTTTGAGCAAGACTGCAAATTTTTCGCACATTTTGAAATCGTGCTGTCTCTCTCTAGGAGTTGATTTTGCAGTAAAGTTGTTAGTTAAAAAAAAGCTCTAGGTTTGTTTAGGATACACTAAAAATTTCAGAAGAATCAGACAATTTTCACCTAGTTTTTTGAACCATCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCTAGG</site>
                <isoschizomers>
                    <enzyme>AvrII</enzyme>
                    <enzyme>BlnI</enzyme>
                    <enzyme>BspA2I</enzyme>
                    <enzyme>XmaJI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCNNGG</site>
                <isoschizomers>
                    <enzyme>BsaJI</enzyme>
                    <enzyme>BseDI</enzyme>
                    <enzyme>BssECI</enzyme>
                    <enzyme>SecI</enzyme>
                </isoschizomers>
                <canonical_bands>505 340 155</canonical_bands>
                <polymorphic_bands>660 340</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWWGG</site>
                <isoschizomers>
                    <enzyme>BssT1I</enzyme>
                    <enzyme>Eco130I</enzyme>
                    <enzyme>EcoT14I</enzyme>
                    <enzyme>ErhI</enzyme>
                    <enzyme>StyI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGTACCCTGGACCTTCTAGTCT</pcr_primer_p1>
		<pcr_primer_p2>GTTCCAGTACATTAAAGTAAACTCC</pcr_primer_p2>
		<pcr_amplicon_size>287</pcr_amplicon_size>
		<canonical_amplicon>TAGTACCCTGGACCTTCTAGTCTACTACAGTACCGGTCAATAAGATATAAGAAAACATATTTTTCAGATAGTTTTCAGCCATTTTGACTATTTTCAGGAGTCTGGAGCTCGACTGTCAAGTTCCCGATCACTTTGAAAGTTTTGGAAAGTGTAAAACAAGCCTAGGTAGAAAATTTAGCATTCATAGAATTTTTGAAAATTCCTAGATTTTCCGTTTTGTCGATTTCTGAAAGACACCCCTTTTTTCGCAGGTTTTCGTACTGGAGTTTACTTTAATGTACTGGAAC</canonical_amplicon>
		<polymorphic_amplicon>TAGTACCCTGGACCTTCTAGTCTACTACAGTACCGGTCAATAAGATATAAGAAAACATATTTTTCAGATAGTTTTCAGCCATTTTGACTATTTTCAGGAGTCTGGAGCTCGACTGTCAAGTTCCCGATCACTTTGAAAGTTTTGGAAAGTGTAAAACAAGCCTAGRTAGAAAATTTAGCATTCATAGAATTTTTGAAAATTCCTAGATTTTCCGTTTTGTCGATTTCTGAAAGACACCCCTTTTTTCGCAGGTTTTCGTACTGGAGTTTACTTTAATGTACTGGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39640</snp_id>
        <super_contig>c014200791.Contig3</super_contig>
        <contig_pos>10043</contig_pos>
        <strand>+</strand>
        <context>TGGAACTTGT[A/G]CAACAttttt</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTCGCAGGTTTTCGTACTGGAGTTTACTTTAATGTACTGGAACTTGT</left_flank>
        <right_flank>CAACATTTTTGAAAACTGAATTTCTGAGGAGGTATGCCAAATGGAAGCGC</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACAACTTTTTCAAGCGTTTCATCCAATGGTTCATCGATTTGGACAATGAGAGGGAGCGAATTGAAATCGGAAATCATTCATAAATGATTGCTGAATTAAAACCAAATTATATTAAAGCAGGAATAGAAGAAAGAAGTTCAAAACCGTATGAAAATTTAGTGAAACGGGGAGAAAGATGTGATTGTTTAAAAAAACCCTTCACGACCATAGTACCCTGGACCTTCTAGTCTACTACAGTACCGGTCAATAAGATATAAGAAAACATATTTTTCAGATAGTTTTCAGCCATTTTGACTATTTTCAGGAGTCTGGAGCTCGACTGTCAAGTTCCCGATCACTTTGAAAGTTTTGGAAAGTGTAAAACAAGCCTAGGTAGAAAATTTAGCATTCATAGAATTTTTGAAAATTCCTAGATTTTCCGTTTTGTCGATTTCTGAAAGACACCCCTTTTTTCGCAGGTTTTCGTACTGGAGTTTACTTTAATGTACTGGAACTTGTGCAACATTTTTGAAAACTGAATTTCTGAGGAGGTATGCCAAATGGAAGCGCTTCCCTCTTTAATGTTTCTTATCTCTAGAACTCAACTTTTAAGAAAAGGTCTCAACTACAAAAATGAAGATCTAGTCAGTTTAGTATAGTATGAAATTTTCAGACAAATCTATAAAAATTGAGCTAGTGTTTCAGACAGCCAAAAAAATCATTTTTGAGCAAGACTGCAAATTTTTCGCACATTTTGAAATCGTGCTGTCTCTCTCTAGGAGTTGATTTTGCAGTAAAGTTGTTAGTTAAAAAAAAGCTCTAGGTTTGTTTAGGATACACTAAAAATTTCAGAAGAATCAGACAATTTTCACCTAGTTTTTTGAACCATCAAAAACAAGTATTCAGTACAAAAACGGGCAAAGATTAGTGTCTTTCAGTAATCGGAATTAGTCGGAATGTTCAAAAAATTCTGTGAATGCAAAGCTTTCAAACTAGGTCTGTTTTACATCCTCCAATATT</canonical>
            <polymorphic>AACAACTTTTTCAAGCGTTTCATCCAATGGTTCATCGATTTGGACAATGAGAGGGAGCGAATTGAAATCGGAAATCATTCATAAATGATTGCTGAATTAAAACCAAATTATATTAAAGCAGGAATAGAAGAAAGAAGTTCAAAACCGTATGAAAATTTAGTGAAACGGGGAGAAAGATGTGATTGTTTAAAAAAACCCTTCACGACCATAGTACCCTGGACCTTCTAGTCTACTACAGTACCGGTCAATAAGATATAAGAAAACATATTTTTCAGATAGTTTTCAGCCATTTTGACTATTTTCAGGAGTCTGGAGCTCGACTGTCAAGTTCCCGATCACTTTGAAAGTTTTGGAAAGTGTAAAACAAGCCTAGGTAGAAAATTTAGCATTCATAGAATTTTTGAAAATTCCTAGATTTTCCGTTTTGTCGATTTCTGAAAGACACCCCTTTTTTCGCAGGTTTTCGTACTGGAGTTTACTTTAATGTACTGGAACTTGTRCAACATTTTTGAAAACTGAATTTCTGAGGAGGTATGCCAAATGGAAGCGCTTCCCTCTTTAATGTTTCTTATCTCTAGAACTCAACTTTTAAGAAAAGGTCTCAACTACAAAAATGAAGATCTAGTCAGTTTAGTATAGTATGAAATTTTCAGACAAATCTATAAAAATTGAGCTAGTGTTTCAGACAGCCAAAAAAATCATTTTTGAGCAAGACTGCAAATTTTTCGCACATTTTGAAATCGTGCTGTCTCTCTCTAGGAGTTGATTTTGCAGTAAAGTTGTTAGTTAAAAAAAAGCTCTAGGTTTGTTTAGGATACACTAAAAATTTCAGAAGAATCAGACAATTTTCACCTAGTTTTTTGAACCATCAAAAACAAGTATTCAGTACAAAAACGGGCAAAGATTAGTGTCTTTCAGTAATCGGAATTAGTCGGAATGTTCAAAAAATTCTGTGAATGCAAAGCTTTCAAACTAGGTCTGTTTTACATCCTCCAATATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 217 188 54 41</canonical_bands>
                <polymorphic_bands>717 188 54 41</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>179 162 136 85 74 59 56 51 45 45 32 21 21 19 15</canonical_bands>
                <polymorphic_bands>235 162 136 85 74 59 51 45 45 32 21 21 19 15</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TAGTACCCTGGACCTTCTAGTCT</pcr_primer_p1>
		<pcr_primer_p2>CATTTTTATGAATTTCTGAACTTTT</pcr_primer_p2>
		<pcr_amplicon_size>896</pcr_amplicon_size>
		<canonical_amplicon>TAGTACCCTGGACCTTCTAGTCTACTACAGTACCGGTCAATAAGATATAAGAAAACATATTTTTCAGATAGTTTTCAGCCATTTTGACTATTTTCAGGAGTCTGGAGCTCGACTGTCAAGTTCCCGATCACTTTGAAAGTTTTGGAAAGTGTAAAACAAGCCTAGGTAGAAAATTTAGCATTCATAGAATTTTTGAAAATTCCTAGATTTTCCGTTTTGTCGATTTCTGAAAGACACCCCTTTTTTCGCAGGTTTTCGTACTGGAGTTTACTTTAATGTACTGGAACTTGTGCAACATTTTTGAAAACTGAATTTC</canonical_amplicon>
		<polymorphic_amplicon>TAGTACCCTGGACCTTCTAGTCTACTACAGTACCGGTCAATAAGATATAAGAAAACATATTTTTCAGATAGTTTTCAGCCATTTTGACTATTTTCAGGAGTCTGGAGCTCGACTGTCAAGTTCCCGATCACTTTGAAAGTTTTGGAAAGTGTAAAACAAGCCTAGGTAGAAAATTTAGCATTCATAGAATTTTTGAAAATTCCTAGATTTTCCGTTTTGTCGATTTCTGAAAGACACCCCTTTTTTCGCAGGTTTTCGTACTGGAGTTTACTTTAATGTACTGGAACTTGTRCAACATTTTTGAAAACTGAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39641</snp_id>
        <super_contig>c014200791.Contig3</super_contig>
        <contig_pos>13869</contig_pos>
        <strand>+</strand>
        <context>ATTTTAGAAT[A/T]TCAAAATTYC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCAGAAATCCAATACTCTCAGAATTCCTGATTTACACAATTTTAGAAT</left_flank>
        <right_flank>TCAAAATTTCAGAATCAACAATAGAAAAAAATCACTCAACACTGGAAAAA</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTGAATACGATTGTATATTTTGGAACCAACATCTTAAAATTTCGAAAACCAAAATTTTCTAAAACTTTCAGAATTTAGCATCTGAGAATCTTACCTGATAGCATTATAGCATAAATAAAATGTATCCAGCGGGAAATTCAATAGTGACGTTGCATAAATAATCACCAGGACCAGAATAGAAATTTGAATAGTTACTGAAAGAAAAAATTGTGCTACAGTAATCCAAAAGATTTGAGTTACCTGTAATACTGCTCATGATGAAAAGTTTCACTTCTTTTTTCTTGATAACAGCACGGGATTTTGCAAAATGGGAGGATTTCTGAAATGTAATCTATTTTAAAGATTCTAGTTAAAAAATCATTCCTAATTCTGAAAATCATTCCTAATTCTGAAAATTTCAAAAAAAATCCTAAAAGACCCAAGAATACAAAACCCTGAAATTCCAAATTTTCAGAAATCCAATACTCTCAGAATTCCTGATTTACACAATTTTAGAATATCAAAATTTCAGAATCAACAATAGAAAAAAATCACTCAACACTGGAAAAATTTCATTTTGTTATCAAACTTTTGAAACGATGAAATTTTTTTGAAACTTTTCAAATTCCCCGCTAACTCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAATAACAATAAGCCAAAATCAAATAAATGCACACAATTGCCAAGAACAGCCCAGCGATTCCGAAAAGTACACCAATGAAAATTTCACTGAAAAAAATGTTGGAATCAATTTACGCTCAAATTTTGGTTTCAACCGTTTCCCCGAATCCGACCTTTTGAACCTTGGGACGACTCCATTTTTAGAATTTCGATATAATTGAGTTTCGTTGAAAAATGTGGCGATTCCAGCAAAAAGTCCCGGCAAAAATTGAATGGCTATGGCAATTCGGAGGCGCGTGGATGTCCACATCTGAAAATGGAGTAGCTGGAAGGGTTACTGTAGGATTCATAAAGACTAATGTTGTA</canonical>
            <polymorphic>TGTGAATACGATTGTATATTTTGGAACCAACATCTTAAAATTTCGAAAACCAAAATTTTCTAAAACTTTCAGAATTTAGCATCTGAGAATCTTACCTGATAGCATTATAGCATAAATAAAATGTATCCAGCGGGAAATTCAATAGTGACGTTGCATAAATAATCACCAGGACCAGAATAGAAATTTGAATAGTTACTGAAAGAAAAAATTGTGCTACAGTAATCCAAAAGATTTGAGTTACCTGTAATACTGCTCATGATGAAAAGTTTCACTTCTTTTTTCTTGATAACAGCACGGGATTTTGCAAAATGGGAGGATTTCTGAAATGTAATCTATTTTAAAGATTCTAGTTAAAAAATCATTCCTAATTCTGAAAATCATTCCTAATTCTGAAAATTTCAAAAAAAATCCTAAAAGACCCAAGAATACAAAACCCTGAAATTCCAAATTTTCAGAAATCCAATACTCTCAGAATTCCTGATTTACACAATTTTAGAATWTCAAAATTTCAGAATCAACAATAGAAAAAAATCACTCAACACTGGAAAAATTTCATTTTGTTATCAAACTTTTGAAACGATGAAATTTTTTTGAAACTTTTCAAATTCCCCGCTAACTCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAATAACAATAAGCCAAAATCAAATAAATGCACACAATTGCCAAGAACAGCCCAGCGATTCCGAAAAGTACACCAATGAAAATTTCACTGAAAAAAATGTTGGAATCAATTTACGCTCAAATTTTGGTTTCAACCGTTTCCCCGAATCCGACCTTTTGAACCTTGGGACGACTCCATTTTTAGAATTTCGATATAATTGAGTTTCGTTGAAAAATGTGGCGATTCCAGCAAAAAGTCCCGGCAAAAATTGAATGGCTATGGCAATTCGGAGGCGCGTGGATGTCCACATCTGAAAATGGAGTAGCTGGAAGGGTTACTGTAGGATTCATAAAGACTAATGTTGTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAAAAGACCCAAGAATACAAAA</pcr_primer_p1>
		<pcr_primer_p2>TTTGTTGTTCATGTTAAGAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>CTAAAAGACCCAAGAATACAAAACCCTGAAATTCCAAATTTTCAGAAATCCAATACTCTCAGAATTCCTGATTTACACAATTTTAGAATATCAAAATTTCAGAATCAACAATAGAAAAAAATCACTCAACACTGGAAAAATTTCATTTTGTTATCAAACTTTTGAAACGATGAAATTTTTTTGAAACTTTTCAAATTCCCCGCTAACTCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAA</canonical_amplicon>
		<polymorphic_amplicon>CTAAAAGACCCAAGAATACAAAACCCTGAAATTCCAAATTTTCAGAAATCCAATACTCTCAGAATTCCTGATTTACACAATTTTAGAATWTCAAAATTTCAGAATCAACAATAGAAAAAAATCACTCAACACTGGAAAAATTTCATTTTGTTATCAAACTTTTGAAACGATGAAATTTTTTTGAAACTTTTCAAATTCCCCGCTAACTCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39642</snp_id>
        <super_contig>c014200791.Contig3</super_contig>
        <contig_pos>13878</contig_pos>
        <strand>+</strand>
        <context>TWTCAAAATT[C/T]CAGAATCAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCAATACTCTCAGAATTCCTGATTTACACAATTTTAGAATATCAAAATT</left_flank>
        <right_flank>CAGAATCAACAATAGAAAAAAATCACTCAACACTGGAAAAATTTCATTTT</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATTGTATATTTTGGAACCAACATCTTAAAATTTCGAAAACCAAAATTTTCTAAAACTTTCAGAATTTAGCATCTGAGAATCTTACCTGATAGCATTATAGCATAAATAAAATGTATCCAGCGGGAAATTCAATAGTGACGTTGCATAAATAATCACCAGGACCAGAATAGAAATTTGAATAGTTACTGAAAGAAAAAATTGTGCTACAGTAATCCAAAAGATTTGAGTTACCTGTAATACTGCTCATGATGAAAAGTTTCACTTCTTTTTTCTTGATAACAGCACGGGATTTTGCAAAATGGGAGGATTTCTGAAATGTAATCTATTTTAAAGATTCTAGTTAAAAAATCATTCCTAATTCTGAAAATCATTCCTAATTCTGAAAATTTCAAAAAAAATCCTAAAAGACCCAAGAATACAAAACCCTGAAATTCCAAATTTTCAGAAATCCAATACTCTCAGAATTCCTGATTTACACAATTTTAGAATATCAAAATTTCAGAATCAACAATAGAAAAAAATCACTCAACACTGGAAAAATTTCATTTTGTTATCAAACTTTTGAAACGATGAAATTTTTTTGAAACTTTTCAAATTCCCCGCTAACTCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAATAACAATAAGCCAAAATCAAATAAATGCACACAATTGCCAAGAACAGCCCAGCGATTCCGAAAAGTACACCAATGAAAATTTCACTGAAAAAAATGTTGGAATCAATTTACGCTCAAATTTTGGTTTCAACCGTTTCCCCGAATCCGACCTTTTGAACCTTGGGACGACTCCATTTTTAGAATTTCGATATAATTGAGTTTCGTTGAAAAATGTGGCGATTCCAGCAAAAAGTCCCGGCAAAAATTGAATGGCTATGGCAATTCGGAGGCGCGTGGATGTCCACATCTGAAAATGGAGTAGCTGGAAGGGTTACTGTAGGATTCATAAAGACTAATGTTGTATGATTACTG</canonical>
            <polymorphic>GATTGTATATTTTGGAACCAACATCTTAAAATTTCGAAAACCAAAATTTTCTAAAACTTTCAGAATTTAGCATCTGAGAATCTTACCTGATAGCATTATAGCATAAATAAAATGTATCCAGCGGGAAATTCAATAGTGACGTTGCATAAATAATCACCAGGACCAGAATAGAAATTTGAATAGTTACTGAAAGAAAAAATTGTGCTACAGTAATCCAAAAGATTTGAGTTACCTGTAATACTGCTCATGATGAAAAGTTTCACTTCTTTTTTCTTGATAACAGCACGGGATTTTGCAAAATGGGAGGATTTCTGAAATGTAATCTATTTTAAAGATTCTAGTTAAAAAATCATTCCTAATTCTGAAAATCATTCCTAATTCTGAAAATTTCAAAAAAAATCCTAAAAGACCCAAGAATACAAAACCCTGAAATTCCAAATTTTCAGAAATCCAATACTCTCAGAATTCCTGATTTACACAATTTTAGAATATCAAAATTYCAGAATCAACAATAGAAAAAAATCACTCAACACTGGAAAAATTTCATTTTGTTATCAAACTTTTGAAACGATGAAATTTTTTTGAAACTTTTCAAATTCCCCGCTAACTCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAATAACAATAAGCCAAAATCAAATAAATGCACACAATTGCCAAGAACAGCCCAGCGATTCCGAAAAGTACACCAATGAAAATTTCACTGAAAAAAATGTTGGAATCAATTTACGCTCAAATTTTGGTTTCAACCGTTTCCCCGAATCCGACCTTTTGAACCTTGGGACGACTCCATTTTTAGAATTTCGATATAATTGAGTTTCGTTGAAAAATGTGGCGATTCCAGCAAAAAGTCCCGGCAAAAATTGAATGGCTATGGCAATTCGGAGGCGCGTGGATGTCCACATCTGAAAATGGAGTAGCTGGAAGGGTTACTGTAGGATTCATAAAGACTAATGTTGTATGATTACTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>213 171 132 64 63 46 45 44 39 35 32 29 26 20 19 15 7</canonical_bands>
                <polymorphic_bands>213 171 132 76 64 63 46 45 39 35 29 26 20 19 15 7</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>238 206 119 87 63 63 62 50 40 23 19 17 13</canonical_bands>
                <polymorphic_bands>246 238 119 87 63 63 62 50 23 19 17 13</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAGAAATCCAATACTCTCAG</pcr_primer_p1>
		<pcr_primer_p2>CAATTGTGTGCATTTATTTGAT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTTCAGAAATCCAATACTCTCAGAATTCCTGATTTACACAATTTTAGAATATCAAAATTTCAGAATCAACAATAGAAAAAAATCACTCAACACTGGAAAAATTTCATTTTGTTATCAAACTTTTGAAACGATGAAATTTTTTTGAAACTTTTCAAATTCCCCGCTAACTCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAATAACAATAAGCCAAAATCAAATAAATGCACACAATTG</canonical_amplicon>
		<polymorphic_amplicon>TTTCAGAAATCCAATACTCTCAGAATTCCTGATTTACACAATTTTAGAATATCAAAATTYCAGAATCAACAATAGAAAAAAATCACTCAACACTGGAAAAATTTCATTTTGTTATCAAACTTTTGAAACGATGAAATTTTTTTGAAACTTTTCAAATTCCCCGCTAACTCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAATAACAATAAGCCAAAATCAAATAAATGCACACAATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39643</snp_id>
        <super_contig>c014200791.Contig3</super_contig>
        <contig_pos>14037</contig_pos>
        <strand>+</strand>
        <context>ATAACAATAA[G/T]CCAAAATCAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAATAACAATAA</left_flank>
        <right_flank>CCAAAATCAAATAAATGCACACAATTGCCAAGAACAGCCCAGCGATTCCG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGACCAGAATAGAAATTTGAATAGTTACTGAAAGAAAAAATTGTGCTACAGTAATCCAAAAGATTTGAGTTACCTGTAATACTGCTCATGATGAAAAGTTTCACTTCTTTTTTCTTGATAACAGCACGGGATTTTGCAAAATGGGAGGATTTCTGAAATGTAATCTATTTTAAAGATTCTAGTTAAAAAATCATTCCTAATTCTGAAAATCATTCCTAATTCTGAAAATTTCAAAAAAAATCCTAAAAGACCCAAGAATACAAAACCCTGAAATTCCAAATTTTCAGAAATCCAATACTCTCAGAATTCCTGATTTACACAATTTTAGAATATCAAAATTTCAGAATCAACAATAGAAAAAAATCACTCAACACTGGAAAAATTTCATTTTGTTATCAAACTTTTGAAACGATGAAATTTTTTTGAAACTTTTCAAATTCCCCGCTAACTCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAATAACAATAAGCCAAAATCAAATAAATGCACACAATTGCCAAGAACAGCCCAGCGATTCCGAAAAGTACACCAATGAAAATTTCACTGAAAAAAATGTTGGAATCAATTTACGCTCAAATTTTGGTTTCAACCGTTTCCCCGAATCCGACCTTTTGAACCTTGGGACGACTCCATTTTTAGAATTTCGATATAATTGAGTTTCGTTGAAAAATGTGGCGATTCCAGCAAAAAGTCCCGGCAAAAATTGAATGGCTATGGCAATTCGGAGGCGCGTGGATGTCCACATCTGAAAATGGAGTAGCTGGAAGGGTTACTGTAGGATTCATAAAGACTAATGTTGTATGATTACTGTAGTTCAGTGTTACTATAGTGTAAGTGGGAATTACTGAAGTTGAATCATCAATTATTGCAATTCAATTTAACAATGGTTACTGTACGTTTCATGAAGACTTCAGTGGCAATATAACGTTCGTTGGGATTACTGCAGTTGGAATATCGATTCTTACAGTC</canonical>
            <polymorphic>GGACCAGAATAGAAATTTGAATAGTTACTGAAAGAAAAAATTGTGCTACAGTAATCCAAAAGATTTGAGTTACCTGTAATACTGCTCATGATGAAAAGTTTCACTTCTTTTTTCTTGATAACAGCACGGGATTTTGCAAAATGGGAGGATTTCTGAAATGTAATCTATTTTAAAGATTCTAGTTAAAAAATCATTCCTAATTCTGAAAATCATTCCTAATTCTGAAAATTTCAAAAAAAATCCTAAAAGACCCAAGAATACAAAACCCTGAAATTCCAAATTTTCAGAAATCCAATACTCTCAGAATTCCTGATTTACACAATTTTAGAATATCAAAATTTCAGAATCAACAATAGAAAAAAATCACTCAACACTGGAAAAATTTCATTTTGTTATCAAACTTTTGAAACGATGAAATTTTTTTGAAACTTTTCAAATTCCCCGCTAACTCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAATAACAATAAKCCAAAATCAAATAAATGCACACAATTGCCAAGAACAGCCCAGCGATTCCGAAAAGTACACCAATGAAAATTTCACTGAAAAAAATGTTGGAATCAATTTACGCTCAAATTTTGGTTTCAACCGTTTCCCCGAATCCGACCTTTTGAACCTTGGGACGACTCCATTTTTAGAATTTCGATATAATTGAGTTTCGTTGAAAAATGTGGCGATTCCAGCAAAAAGTCCCGGCAAAAATTGAATGGCTATGGCAATTCGGAGGCGCGTGGATGTCCACATCTGAAAATGGAGTAGCTGGAAGGGTTACTGTAGGATTCATAAAGACTAATGTTGTATGATTACTGTAGTTCAGTGTTACTATAGTGTAAGTGGGAATTACTGAAGTTGAATCATCAATTATTGCAATTCAATTTAACAATGGTTACTGTACGTTTCATGAAGACTTCAGTGGCAATATAACGTTCGTTGGGATTACTGCAGTTGGAATATCGATTCTTACAGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>500 209 205 49 37</canonical_bands>
                <polymorphic_bands>537 209 205 49</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CGCTAACTCACAATAGCATTACT</pcr_primer_p1>
		<pcr_primer_p2>ATCGAAATTCTAAAAATGGAGTC</pcr_primer_p2>
		<pcr_amplicon_size>237</pcr_amplicon_size>
		<canonical_amplicon>CGCTAACTCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAATAACAATAAGCCAAAATCAAATAAATGCACACAATTGCCAAGAACAGCCCAGCGATTCCGAAAAGTACACCAATGAAAATTTCACTGAAAAAAATGTTGGAATCAATTTACGCTCAAATTTTGGTTTCAACCGTTTCCCCGAATCCGACCTTTTGAACCTTGGGACGACTCCATTTTTAGAATTTCGAT</canonical_amplicon>
		<polymorphic_amplicon>CGCTAACTCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAATAACAATAAKCCAAAATCAAATAAATGCACACAATTGCCAAGAACAGCCCAGCGATTCCGAAAAGTACACCAATGAAAATTTCACTGAAAAAAATGTTGGAATCAATTTACGCTCAAATTTTGGTTTCAACCGTTTCCCCGAATCCGACCTTTTGAACCTTGGGACGACTCCATTTTTAGAATTTCGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39644</snp_id>
        <super_contig>c014200791.Contig3</super_contig>
        <contig_pos>14350</contig_pos>
        <strand>+</strand>
        <context>ACTGTAGGAT[C/T]CATAAAGACT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTGGATGTCCACATCTGAAAATGGAGTAGCTGGAAGGGTTACTGTAGGAT</left_flank>
        <right_flank>CATAAAGACTAATGTTGTATGATTACTGTAGTTCAGTGTTACTATAGTGT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTACACAATTTTAGAATATCAAAATTTCAGAATCAACAATAGAAAAAAATCACTCAACACTGGAAAAATTTCATTTTGTTATCAAACTTTTGAAACGATGAAATTTTTTTGAAACTTTTCAAATTCCCCGCTAACTCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAATAACAATAAGCCAAAATCAAATAAATGCACACAATTGCCAAGAACAGCCCAGCGATTCCGAAAAGTACACCAATGAAAATTTCACTGAAAAAAATGTTGGAATCAATTTACGCTCAAATTTTGGTTTCAACCGTTTCCCCGAATCCGACCTTTTGAACCTTGGGACGACTCCATTTTTAGAATTTCGATATAATTGAGTTTCGTTGAAAAATGTGGCGATTCCAGCAAAAAGTCCCGGCAAAAATTGAATGGCTATGGCAATTCGGAGGCGCGTGGATGTCCACATCTGAAAATGGAGTAGCTGGAAGGGTTACTGTAGGATTCATAAAGACTAATGTTGTATGATTACTGTAGTTCAGTGTTACTATAGTGTAAGTGGGAATTACTGAAGTTGAATCATCAATTATTGCAATTCAATTTAACAATGGTTACTGTACGTTTCATGAAGACTTCAGTGGCAATATAACGTTCGTTGGGATTACTGCAGTTGGAATATCGATTCTTACAGTCTAGGCTAGTTAGGTGTTACTATATTTGAAGCATTAATCCCTGTAGGTTTGGACTAGTAAGGATACTGTCGAATTCTTGAAGACTACTGTAATAGTACTACTGTAGGTTGAGCACGTATTCTCAGTAGGACTACTGTAGCTGAACGGTCTAGGCTTTTGTAGGTGAGCGTCAGTATAGATAACGCTGGGTTTACTATAGTATAGTATCAATTCTCGCAGTTTAGGATAGCAAGGGTTACTGTAGGATTTATGAAGAATACTGTAGTAAGATTACTGTACCTACTGTCAGATTCCAGCAGCTGAATGATCTTCTA</canonical>
            <polymorphic>TTTACACAATTTTAGAATATCAAAATTTCAGAATCAACAATAGAAAAAAATCACTCAACACTGGAAAAATTTCATTTTGTTATCAAACTTTTGAAACGATGAAATTTTTTTGAAACTTTTCAAATTCCCCGCTAACTCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAATAACAATAAGCCAAAATCAAATAAATGCACACAATTGCCAAGAACAGCCCAGCGATTCCGAAAAGTACACCAATGAAAATTTCACTGAAAAAAATGTTGGAATCAATTTACGCTCAAATTTTGGTTTCAACCGTTTCCCCGAATCCGACCTTTTGAACCTTGGGACGACTCCATTTTTAGAATTTCGATATAATTGAGTTTCGTTGAAAAATGTGGCGATTCCAGCAAAAAGTCCCGGCAAAAATTGAATGGCTATGGCAATTCGGAGGCGCGTGGATGTCCACATCTGAAAATGGAGTAGCTGGAAGGGTTACTGTAGGATYCATAAAGACTAATGTTGTATGATTACTGTAGTTCAGTGTTACTATAGTGTAAGTGGGAATTACTGAAGTTGAATCATCAATTATTGCAATTCAATTTAACAATGGTTACTGTACGTTTCATGAAGACTTCAGTGGCAATATAACGTTCGTTGGGATTACTGCAGTTGGAATATCGATTCTTACAGTCTAGGCTAGTTAGGTGTTACTATATTTGAAGCATTAATCCCTGTAGGTTTGGACTAGTAAGGATACTGTCGAATTCTTGAAGACTACTGTAATAGTACTACTGTAGGTTGAGCACGTATTCTCAGTAGGACTACTGTAGCTGAACGGTCTAGGCTTTTGTAGGTGAGCGTCAGTATAGATAACGCTGGGTTTACTATAGTATAGTATCAATTCTCGCAGTTTAGGATAGCAAGGGTTACTGTAGGATTTATGAAGAATACTGTAGTAAGATTACTGTACCTACTGTCAGATTCCAGCAGCTGAATGATCTTCTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>300 200 104 102 74 51 46 41 31 26 25</canonical_bands>
                <polymorphic_bands>300 200 176 104 51 46 41 31 26 25</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>300 200 104 102 77 74 46 41 31 25</canonical_bands>
                <polymorphic_bands>300 200 176 104 77 46 41 31 25</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGAGTTTCGTTGAAAAATGT</pcr_primer_p1>
		<pcr_primer_p2>ATGAAACGTACAGTAACCATTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTGAGTTTCGTTGAAAAATGTGGCGATTCCAGCAAAAAGTCCCGGCAAAAATTGAATGGCTATGGCAATTCGGAGGCGCGTGGATGTCCACATCTGAAAATGGAGTAGCTGGAAGGGTTACTGTAGGATTCATAAAGACTAATGTTGTATGATTACTGTAGTTCAGTGTTACTATAGTGTAAGTGGGAATTACTGAAGTTGAATCATCAATTATTGCAATTCAATTTAACAATGGTTACTGTACGTTTCAT</canonical_amplicon>
		<polymorphic_amplicon>ATTGAGTTTCGTTGAAAAATGTGGCGATTCCAGCAAAAAGTCCCGGCAAAAATTGAATGGCTATGGCAATTCGGAGGCGCGTGGATGTCCACATCTGAAAATGGAGTAGCTGGAAGGGTTACTGTAGGATYCATAAAGACTAATGTTGTATGATTACTGTAGTTCAGTGTTACTATAGTGTAAGTGGGAATTACTGAAGTTGAATCATCAATTATTGCAATTCAATTTAACAATGGTTACTGTACGTTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39645</snp_id>
        <super_contig>c014200791.Contig3</super_contig>
        <contig_pos>14416</contig_pos>
        <strand>+</strand>
        <context>GGAATTACTG[A/T]AGTTGAATCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGTATGATTACTGTAGTTCAGTGTTACTATAGTGTAAGTGGGAATTACTG</left_flank>
        <right_flank>AGTTGAATCATCAATTATTGCAATTCAATTTAACAATGGTTACTGTACGT</right_flank>
        <qual_score>135</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAATTTCATTTTGTTATCAAACTTTTGAAACGATGAAATTTTTTTGAAACTTTTCAAATTCCCCGCTAACTCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAATAACAATAAGCCAAAATCAAATAAATGCACACAATTGCCAAGAACAGCCCAGCGATTCCGAAAAGTACACCAATGAAAATTTCACTGAAAAAAATGTTGGAATCAATTTACGCTCAAATTTTGGTTTCAACCGTTTCCCCGAATCCGACCTTTTGAACCTTGGGACGACTCCATTTTTAGAATTTCGATATAATTGAGTTTCGTTGAAAAATGTGGCGATTCCAGCAAAAAGTCCCGGCAAAAATTGAATGGCTATGGCAATTCGGAGGCGCGTGGATGTCCACATCTGAAAATGGAGTAGCTGGAAGGGTTACTGTAGGATTCATAAAGACTAATGTTGTATGATTACTGTAGTTCAGTGTTACTATAGTGTAAGTGGGAATTACTGAAGTTGAATCATCAATTATTGCAATTCAATTTAACAATGGTTACTGTACGTTTCATGAAGACTTCAGTGGCAATATAACGTTCGTTGGGATTACTGCAGTTGGAATATCGATTCTTACAGTCTAGGCTAGTTAGGTGTTACTATATTTGAAGCATTAATCCCTGTAGGTTTGGACTAGTAAGGATACTGTCGAATTCTTGAAGACTACTGTAATAGTACTACTGTAGGTTGAGCACGTATTCTCAGTAGGACTACTGTAGCTGAACGGTCTAGGCTTTTGTAGGTGAGCGTCAGTATAGATAACGCTGGGTTTACTATAGTATAGTATCAATTCTCGCAGTTTAGGATAGCAAGGGTTACTGTAGGATTTATGAAGAATACTGTAGTAAGATTACTGTACCTACTGTCAGATTCCAGCAGCTGAATGATCTTCTATCTTAATTGCTGTACTTGATTCTGTGTATATTAGAAGTGTCACTTTAGCGTACGCTAAAGTTCCTG</canonical>
            <polymorphic>AAATTTCATTTTGTTATCAAACTTTTGAAACGATGAAATTTTTTTGAAACTTTTCAAATTCCCCGCTAACTCACAATAGCATTACTACTCTTTCTTAACATGAACAACAAATAACAATAAGCCAAAATCAAATAAATGCACACAATTGCCAAGAACAGCCCAGCGATTCCGAAAAGTACACCAATGAAAATTTCACTGAAAAAAATGTTGGAATCAATTTACGCTCAAATTTTGGTTTCAACCGTTTCCCCGAATCCGACCTTTTGAACCTTGGGACGACTCCATTTTTAGAATTTCGATATAATTGAGTTTCGTTGAAAAATGTGGCGATTCCAGCAAAAAGTCCCGGCAAAAATTGAATGGCTATGGCAATTCGGAGGCGCGTGGATGTCCACATCTGAAAATGGAGTAGCTGGAAGGGTTACTGTAGGATTCATAAAGACTAATGTTGTATGATTACTGTAGTTCAGTGTTACTATAGTGTAAGTGGGAATTACTGWAGTTGAATCATCAATTATTGCAATTCAATTTAACAATGGTTACTGTACGTTTCATGAAGACTTCAGTGGCAATATAACGTTCGTTGGGATTACTGCAGTTGGAATATCGATTCTTACAGTCTAGGCTAGTTAGGTGTTACTATATTTGAAGCATTAATCCCTGTAGGTTTGGACTAGTAAGGATACTGTCGAATTCTTGAAGACTACTGTAATAGTACTACTGTAGGTTGAGCACGTATTCTCAGTAGGACTACTGTAGCTGAACGGTCTAGGCTTTTGTAGGTGAGCGTCAGTATAGATAACGCTGGGTTTACTATAGTATAGTATCAATTCTCGCAGTTTAGGATAGCAAGGGTTACTGTAGGATTTATGAAGAATACTGTAGTAAGATTACTGTACCTACTGTCAGATTCCAGCAGCTGAATGATCTTCTATCTTAATTGCTGTACTTGATTCTGTGTATATTAGAAGTGTCACTTTAGCGTACGCTAAAGTTCCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTGAGTTTCGTTGAAAAATGT</pcr_primer_p1>
		<pcr_primer_p2>ATGAAACGTACAGTAACCATTG</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>ATTGAGTTTCGTTGAAAAATGTGGCGATTCCAGCAAAAAGTCCCGGCAAAAATTGAATGGCTATGGCAATTCGGAGGCGCGTGGATGTCCACATCTGAAAATGGAGTAGCTGGAAGGGTTACTGTAGGATTCATAAAGACTAATGTTGTATGATTACTGTAGTTCAGTGTTACTATAGTGTAAGTGGGAATTACTGAAGTTGAATCATCAATTATTGCAATTCAATTTAACAATGGTTACTGTACGTTTCAT</canonical_amplicon>
		<polymorphic_amplicon>ATTGAGTTTCGTTGAAAAATGTGGCGATTCCAGCAAAAAGTCCCGGCAAAAATTGAATGGCTATGGCAATTCGGAGGCGCGTGGATGTCCACATCTGAAAATGGAGTAGCTGGAAGGGTTACTGTAGGATTCATAAAGACTAATGTTGTATGATTACTGTAGTTCAGTGTTACTATAGTGTAAGTGGGAATTACTGWAGTTGAATCATCAATTATTGCAATTCAATTTAACAATGGTTACTGTACGTTTCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39646</snp_id>
        <super_contig>c014200791.Contig3</super_contig>
        <contig_pos>16222</contig_pos>
        <strand>+</strand>
        <context>TTCTACCCAG[C/T]TGACCCGCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTACCCCTGAATCATTGTACCCCCGAATTTTTGGCCGAAATTCTACCCAG</left_flank>
        <right_flank>TGACCCGCCGAAATAACACCTTTGATAGTCTTCAATTGTGTTTGTTTTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATCATTTTAAGGTCCATAACTTTATAATTGCCATATTTAACTACCCTAATTGCTAATTAAATACTTACCAGACGCCCATGCAAAATACAAATAAGTATGTGCATAGTAAACATCCAAAAATAAATAAACACGAGTTCCCCATCCCCATTTGGGGAGCATTGCACCCAGATAATTGTTCAGGAGGGTCCCTGAAAATTTTTTTTGAAAAAAAGTTTTTTTTTCCTGTTTCGTGTATTTGATTTCCACTCCGTAGAAGTTTAATTAGACAGTGAAATTCTCAGACTCTGAAGTTCTAAAATTCTCAGATTCCGAATTACTGAAATTTCAAAGTTCTGAAATTCTAAGAATTTTGAGATTTTCAAGCTCTGAAATTCAACAATTCAGAAACTCCCTCAAAAAAAACTATACCCCCGAATCACAAGCGTTGTACCCCTGAATGAAATGAGTTGTACCCCTGAATCATTGTACCCCCGAATTTTTGGCCGAAATTCTACCCAGTTGACCCGCCGAAATAACACCTTTGATAGTCTTCAATTGTGTTTGTTTTCCTCAAAAAACTACGAAAAAGATGTAAAAATAAAAATTCATCATATTCCGAATCATATACTCAAATTGATCTCAATGACCCCTATGAGACTATCAATGCCCCATGGGAGCATTTGGTCCGATGCCCCCTATGAGACATGGTGGGATGCCTCCTAAGAGACAACTTCAGGATGCCCCCGATGAGTTAGTGACCCCTATGAGTGAATGCCCCCTTTGAGCACGATGCCCCCTATTTCGATGCCCCCTGGGAGTATGGGCCTGAAATCTCTCCGGCACAAAAATGTATTTAGACTTTTTCGATATTTTTTTGAAAAATCGACTTCTACTTTTTTCCGTTCCATACTAGTCATAATTTTCATATCCAAAGTACAAACTCTACTAGATCTAAGCATGCCTCTAAGCATTTGTTTTCCATCCCTCAATGTTTTTTTTAAGGCTCACATCACAGGAAAA</canonical>
            <polymorphic>AATCATTTTAAGGTCCATAACTTTATAATTGCCATATTTAACTACCCTAATTGCTAATTAAATACTTACCAGACGCCCATGCAAAATACAAATAAGTATGTGCATAGTAAACATCCAAAAATAAATAAACACGAGTTCCCCATCCCCATTTGGGGAGCATTGCACCCAGATAATTGTTCAGGAGGGTCCCTGAAAATTTTTTTTGAAAAAAAGTTTTTTTTTCCTGTTTCGTGTATTTGATTTCCACTCCGTAGAAGTTTAATTAGACAGTGAAATTCTCAGACTCTGAAGTTCTAAAATTCTCAGATTCCGAATTACTGAAATTTCAAAGTTCTGAAATTCTAAGAATTTTGAGATTTTCAAGCTCTGAAATTCAACAATTCAGAAACTCCCTCAAAAAAAACTATACCCCCGAATCACAAGCGTTGTACCCCTGAATGAAATGAGTTGTACCCCTGAATCATTGTACCCCCGAATTTTTGGCCGAAATTCTACCCAGYTGACCCGCCGAAATAACACCTTTGATAGTCTTCAATTGTGTTTGTTTTCCTCAAAAAACTACGAAAAAGATGTAAAAATAAAAATTCATCATATTCCGAATCATATACTCAAATTGATCTCAATGACCCCTATGAGACTATCAATGCCCCATGGGAGCATTTGGTCCGATGCCCCCTATGAGACATGGTGGGATGCCTCCTAAGAGACAACTTCAGGATGCCCCCGATGAGTTAGTGACCCCTATGAGTGAATGCCCCCTTTGAGCACGATGCCCCCTATTTCGATGCCCCCTGGGAGTATGGGCCTGAAATCTCTCCGGCACAAAAATGTATTTAGACTTTTTCGATATTTTTTTGAAAAATCGACTTCTACTTTTTTCCGTTCCATACTAGTCATAATTTTCATATCCAAAGTACAAACTCTACTAGATCTAAGCATGCCTCTAAGCATTTGTTTTCCATCCCTCAATGTTTTTTTTAAGGCTCACATCACAGGAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>499 392 109</canonical_bands>
                <polymorphic_bands>891 109</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCGTAGAAGTTTAATTAGACAGTG</pcr_primer_p1>
		<pcr_primer_p2>TTTGAGGAAAACAAACACAAT</pcr_primer_p2>
		<pcr_amplicon_size>307</pcr_amplicon_size>
		<canonical_amplicon>CCGTAGAAGTTTAATTAGACAGTGAAATTCTCAGACTCTGAAGTTCTAAAATTCTCAGATTCCGAATTACTGAAATTTCAAAGTTCTGAAATTCTAAGAATTTTGAGATTTTCAAGCTCTGAAATTCAACAATTCAGAAACTCCCTCAAAAAAAACTATACCCCCGAATCACAAGCGTTGTACCCCTGAATGAAATGAGTTGTACCCCTGAATCATTGTACCCCCGAATTTTTGGCCGAAATTCTACCCAGTTGACCCGCCGAAATAACACCTTTGATAGTCTTCAATTGTGTTTGTTTTCCTCAAA</canonical_amplicon>
		<polymorphic_amplicon>CCGTAGAAGTTTAATTAGACAGTGAAATTCTCAGACTCTGAAGTTCTAAAATTCTCAGATTCCGAATTACTGAAATTTCAAAGTTCTGAAATTCTAAGAATTTTGAGATTTTCAAGCTCTGAAATTCAACAATTCAGAAACTCCCTCAAAAAAAACTATACCCCCGAATCACAAGCGTTGTACCCCTGAATGAAATGAGTTGTACCCCTGAATCATTGTACCCCCGAATTTTTGGCCGAAATTCTACCCAGYTGACCCGCCGAAATAACACCTTTGATAGTCTTCAATTGTGTTTGTTTTCCTCAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39647</snp_id>
        <super_contig>c014200791.Contig3</super_contig>
        <contig_pos>16245</contig_pos>
        <strand>+</strand>
        <context>ATAACACCTT[C/T]GATAGTCTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGAATTTTTGGCCGAAATTCTACCCAGTTGACCCGCCGAAATAACACCTT</left_flank>
        <right_flank>GATAGTCTTCAATTGTGTTTGTTTTCCTCAAAAAACTACGAAAAAGATGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATAATTGCCATATTTAACTACCCTAATTGCTAATTAAATACTTACCAGACGCCCATGCAAAATACAAATAAGTATGTGCATAGTAAACATCCAAAAATAAATAAACACGAGTTCCCCATCCCCATTTGGGGAGCATTGCACCCAGATAATTGTTCAGGAGGGTCCCTGAAAATTTTTTTTGAAAAAAAGTTTTTTTTTCCTGTTTCGTGTATTTGATTTCCACTCCGTAGAAGTTTAATTAGACAGTGAAATTCTCAGACTCTGAAGTTCTAAAATTCTCAGATTCCGAATTACTGAAATTTCAAAGTTCTGAAATTCTAAGAATTTTGAGATTTTCAAGCTCTGAAATTCAACAATTCAGAAACTCCCTCAAAAAAAACTATACCCCCGAATCACAAGCGTTGTACCCCTGAATGAAATGAGTTGTACCCCTGAATCATTGTACCCCCGAATTTTTGGCCGAAATTCTACCCAGTTGACCCGCCGAAATAACACCTTTGATAGTCTTCAATTGTGTTTGTTTTCCTCAAAAAACTACGAAAAAGATGTAAAAATAAAAATTCATCATATTCCGAATCATATACTCAAATTGATCTCAATGACCCCTATGAGACTATCAATGCCCCATGGGAGCATTTGGTCCGATGCCCCCTATGAGACATGGTGGGATGCCTCCTAAGAGACAACTTCAGGATGCCCCCGATGAGTTAGTGACCCCTATGAGTGAATGCCCCCTTTGAGCACGATGCCCCCTATTTCGATGCCCCCTGGGAGTATGGGCCTGAAATCTCTCCGGCACAAAAATGTATTTAGACTTTTTCGATATTTTTTTGAAAAATCGACTTCTACTTTTTTCCGTTCCATACTAGTCATAATTTTCATATCCAAAGTACAAACTCTACTAGATCTAAGCATGCCTCTAAGCATTTGTTTTCCATCCCTCAATGTTTTTTTTAAGGCTCACATCACAGGAAAATAATTCATGCAAATAGTGAGCTG</canonical>
            <polymorphic>TATAATTGCCATATTTAACTACCCTAATTGCTAATTAAATACTTACCAGACGCCCATGCAAAATACAAATAAGTATGTGCATAGTAAACATCCAAAAATAAATAAACACGAGTTCCCCATCCCCATTTGGGGAGCATTGCACCCAGATAATTGTTCAGGAGGGTCCCTGAAAATTTTTTTTGAAAAAAAGTTTTTTTTTCCTGTTTCGTGTATTTGATTTCCACTCCGTAGAAGTTTAATTAGACAGTGAAATTCTCAGACTCTGAAGTTCTAAAATTCTCAGATTCCGAATTACTGAAATTTCAAAGTTCTGAAATTCTAAGAATTTTGAGATTTTCAAGCTCTGAAATTCAACAATTCAGAAACTCCCTCAAAAAAAACTATACCCCCGAATCACAAGCGTTGTACCCCTGAATGAAATGAGTTGTACCCCTGAATCATTGTACCCCCGAATTTTTGGCCGAAATTCTACCCAGTTGACCCGCCGAAATAACACCTTYGATAGTCTTCAATTGTGTTTGTTTTCCTCAAAAAACTACGAAAAAGATGTAAAAATAAAAATTCATCATATTCCGAATCATATACTCAAATTGATCTCAATGACCCCTATGAGACTATCAATGCCCCATGGGAGCATTTGGTCCGATGCCCCCTATGAGACATGGTGGGATGCCTCCTAAGAGACAACTTCAGGATGCCCCCGATGAGTTAGTGACCCCTATGAGTGAATGCCCCCTTTGAGCACGATGCCCCCTATTTCGATGCCCCCTGGGAGTATGGGCCTGAAATCTCTCCGGCACAAAAATGTATTTAGACTTTTTCGATATTTTTTTGAAAAATCGACTTCTACTTTTTTCCGTTCCATACTAGTCATAATTTTCATATCCAAAGTACAAACTCTACTAGATCTAAGCATGCCTCTAAGCATTTGTTTTCCATCCCTCAATGTTTTTTTTAAGGCTCACATCACAGGAAAATAATTCATGCAAATAGTGAGCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CCGTAGAAGTTTAATTAGACAGTG</pcr_primer_p1>
		<pcr_primer_p2>ATTTTTACATCTTTTTCGTAGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>331</pcr_amplicon_size>
		<canonical_amplicon>CCGTAGAAGTTTAATTAGACAGTGAAATTCTCAGACTCTGAAGTTCTAAAATTCTCAGATTCCGAATTACTGAAATTTCAAAGTTCTGAAATTCTAAGAATTTTGAGATTTTCAAGCTCTGAAATTCAACAATTCAGAAACTCCCTCAAAAAAAACTATACCCCCGAATCACAAGCGTTGTACCCCTGAATGAAATGAGTTGTACCCCTGAATCATTGTACCCCCGAATTTTTGGCCGAAATTCTACCCAGTTGACCCGCCGAAATAACACCTTTGATAGTCTTCAATTGTGTTTGTTTTCCTCAAAAAACTACGAAAAAGATGTAAAAAT</canonical_amplicon>
		<polymorphic_amplicon>CCGTAGAAGTTTAATTAGACAGTGAAATTCTCAGACTCTGAAGTTCTAAAATTCTCAGATTCCGAATTACTGAAATTTCAAAGTTCTGAAATTCTAAGAATTTTGAGATTTTCAAGCTCTGAAATTCAACAATTCAGAAACTCCCTCAAAAAAAACTATACCCCCGAATCACAAGCGTTGTACCCCTGAATGAAATGAGTTGTACCCCTGAATCATTGTACCCCCGAATTTTTGGCCGAAATTCTACCCAGTTGACCCGCCGAAATAACACCTTYGATAGTCTTCAATTGTGTTTGTTTTCCTCAAAAAACTACGAAAAAGATGTAAAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39648</snp_id>
        <super_contig>c014200791.Contig3</super_contig>
        <contig_pos>49391</contig_pos>
        <strand>+</strand>
        <context>TACCCCCGCA[C/G]GAGAAGAAGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GCCCTCTCCCATGCTAAGGGAGCGCTCTACCACTGAGCTATACCCCCGCA</left_flank>
        <right_flank>GAGAAGAAGTGGCGCGGTGGGCAATTATAAGGCAGAGGGCTTTGAGACTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAACTGTCAGGTGGCAGGAGTAGAAACAATGGATTTATGATTTTATGATTTTATGGTCCCCCAACAGGTTCTGCCCCTTTCTGGAGACTTTTGTACACGTGTGCAAAGTTATTTGATATACCCAATAGGGGTTAGTTGCACAACAAACACCACTGTGACATCACACTGTCCAAATAATCCCATGATTACGGTAGATAGACCCAAACACTCAAATTTCAATCCCATTTCTCCACACCTAAGCCATAATTGCGCCCCTCTAATTGTGGCTTATAGACTTTGTTGCGTATCTTTGGCTATTCTTCTAGGAGGTTTTATAGTGCAATTAGTTGACCGAAGTTGTTGCATTTGAATAGGAGGGCCATCTGGAGGTCAAGAATACAAAAAGTGTTTAAAATCAAAGCAAAAAAAAAGAAAAAAAATATTCTGGAGGTATGGGGAATTGAACCCCAGCCCTCTCCCATGCTAAGGGAGCGCTCTACCACTGAGCTATACCCCCGCACGAGAAGAAGTGGCGCGGTGGGCAATTATAAGGCAGAGGGCTTTGAGACTTTGAAAGTGATAAGAAGTGAAAAAGAGGAAGTTTCTGAAGGTTCAGGTGGAGTTTGGCAAGCTCGCTCTAATGCTAAAAATCTCAAATTTGACTGTTTTTTGGGGTTAAGAAGGATTTTTCGCTATTTTTGGAGCGGAATAATAGGTTTTTAAGGGCAAGGAAGCGTTTGGAGATGGAAAAACGAGTTATACTTGTGTTTAAAGTACTGTTTCTGACTGTTCTCAGGTTAAATTTTAACATTTTTCAGACTAAATTTGTATTGCATTCCAACTTTCCCAAGTTTTCAACATTTTTTCTTCTTCTTCCTTTATTCTGAATTCAAATCTCAATCGTTAAAGAAACTTTTACGATTACCACCTGTTTCCATTTCCAAGGACAGGATCTTCATTCTCTCGATTTGCACTTCAGATAGGCACACAAAGACAGTCATAGGGACCCCCAAACACACCT</canonical>
            <polymorphic>TAACTGTCAGGTGGCAGGAGTAGAAACAATGGATTTATGATTTTATGATTTTATGGTCCCCCAACAGGTTCTGCCCCTTTCTGGAGACTTTTGTACACGTGTGCAAAGTTATTTGATATACCCAATAGGGGTTAGTTGCACAACAAACACCACTGTGACATCACACTGTCCAAATAATCCCATGATTACGGTAGATAGACCCAAACACTCAAATTTCAATCCCATTTCTCCACACCTAAGCCATAATTGCGCCCCTCTAATTGTGGCTTATAGACTTTGTTGCGTATCTTTGGCTATTCTTCTAGGAGGTTTTATAGTGCAATTAGTTGACCGAAGTTGTTGCATTTGAATAGGAGGGCCATCTGGAGGTCAAGAATACAAAAAGTGTTTAAAATCAAAGCAAAAAAAAAGAAAAAAAATATTCTGGAGGTATGGGGAATTGAACCCCAGCCCTCTCCCATGCTAAGGGAGCGCTCTACCACTGAGCTATACCCCCGCASGAGAAGAAGTGGCGCGGTGGGCAATTATAAGGCAGAGGGCTTTGAGACTTTGAAAGTGATAAGAAGTGAAAAAGAGGAAGTTTCTGAAGGTTCAGGTGGAGTTTGGCAAGCTCGCTCTAATGCTAAAAATCTCAAATTTGACTGTTTTTTGGGGTTAAGAAGGATTTTTCGCTATTTTTGGAGCGGAATAATAGGTTTTTAAGGGCAAGGAAGCGTTTGGAGATGGAAAAACGAGTTATACTTGTGTTTAAAGTACTGTTTCTGACTGTTCTCAGGTTAAATTTTAACATTTTTCAGACTAAATTTGTATTGCATTCCAACTTTCCCAAGTTTTCAACATTTTTTCTTCTTCTTCCTTTATTCTGAATTCAAATCTCAATCGTTAAAGAAACTTTTACGATTACCACCTGTTTCCATTTCCAAGGACAGGATCTTCATTCTCTCGATTTGCACTTCAGATAGGCACACAAAGACAGTCATAGGGACCCCCAAACACACCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>160 148 94 84 68 54 46 42 39 37 31 30 28 25 18 13 13 12 10 9 8 6 5 4 3 3 2 2 2 2 2</canonical_bands>
                <polymorphic_bands>160 148 94 84 68 54 46 42 39 37 31 30 30 28 25 13 13 10 9 8 6 5 4 3 3 2 2 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTGTTGCATTTGAATAGGAG</pcr_primer_p1>
		<pcr_primer_p2>GAAACTTCCTCTTTTTCACTTCT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AGTTGTTGCATTTGAATAGGAGGGCCATCTGGAGGTCAAGAATACAAAAAGTGTTTAAAATCAAAGCAAAAAAAAAGAAAAAAAATATTCTGGAGGTATGGGGAATTGAACCCCAGCCCTCTCCCATGCTAAGGGAGCGCTCTACCACTGAGCTATACCCCCGCACGAGAAGAAGTGGCGCGGTGGGCAATTATAAGGCAGAGGGCTTTGAGACTTTGAAAGTGATAAGAAGTGAAAAAGAGGAAGTTTC</canonical_amplicon>
		<polymorphic_amplicon>AGTTGTTGCATTTGAATAGGAGGGCCATCTGGAGGTCAAGAATACAAAAAGTGTTTAAAATCAAAGCAAAAAAAAAGAAAAAAAATATTCTGGAGGTATGGGGAATTGAACCCCAGCCCTCTCCCATGCTAAGGGAGCGCTCTACCACTGAGCTATACCCCCGCASGAGAAGAAGTGGCGCGGTGGGCAATTATAAGGCAGAGGGCTTTGAGACTTTGAAAGTGATAAGAAGTGAAAAAGAGGAAGTTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39649</snp_id>
        <super_contig>c014200791.Contig3</super_contig>
        <contig_pos>63570</contig_pos>
        <strand>+</strand>
        <context>GTTTATCGGG[G/T]GCCCMTaaca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AATTTTTGGTTGAGAAAAAAGGTCGAATCGCAAAAACTGTGTTTATCGGG</left_flank>
        <right_flank>GCCCATAACATTGCGCCTATTTATTTCGGTTCCTATAAGATATATCAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGATGATATTATGACATACATTTTATCAGTTGACCAATTTTTGATATCTTGTATAGGAACCGAGATAATTGTCATCACAGGGCGATTGTAGTCCAAATAAGAAAATCAAAGTAGACTTTTTTCAACTAGGTGGTTCTCATGCCTTTTGAACTATTCGATTTGGGTCACCACACAAACACACTTCCAATCCTATTCGATGCGCATCGTTTGACGTCTATGGGAACTTCTTACCGCCGACCACCGTCTTTTAGATCTACACACCGGATTAATAATCGGTGGGGGCCACCACCGACAAGGACACCCTCCCCCCTTTATGCCCTTCCGGTGCTTAAGAGTGACTAAAGGTGGTAATGGACATGGGAACTTGGACATTTCCGTCGGAAGTTCCCGGCGGGGGCATTCCATTAGAGATTTATCAATAGAGACCATTAGTAGATTGGGGACCTGGAATTTTTGGTTGAGAAAAAAGGTCGAATCGCAAAAACTGTGTTTATCGGGGGCCCATAACATTGCGCCTATTTATTTCGGTTCCTATAAGATATATCAAAATGTGTCAACTGATAAAATGTTACTGATAATGTGAGAAACATTTTGTCAATTGACGACTTTTTTATATATCTTACAGAAAACGAGATACATGAGCTCAAAGTGTCGAATCAGTGGCACCCTATTGGCGACTCTACGAAGACCCTAACTTCAATCCAATGTATCTCGGTTTCTGTGAAAGGTGTCAAAATTGTGAACTGATAAAACCATTAGTGATATTATGATGAATGATTTATCAGTTTACGATTTTTGATATCTTTCAAAGAACCGAGATAATTGAGCTCAAAGTTTAGCTGCGACAGATCAGTGGCTACCTATTGGCGGCTCGGGGGACTTTAACTTCAAGCCGATTTATCTCGGTCCGTGTAACAGATGTCCGAAAATTGTTAACTGATAAAATGTTACTAATAATGTGATACACATTTCGTTAGTTAACCACTTTTTGATTTTTAT</canonical>
            <polymorphic>TTGATGATATTATGACATACATTTTATCAGTTGACCAATTTTTGATATCTTGTATAGGAACCGAGATAATTGTCATCACAGGGCGATTGTAGTCCAAATAAGAAAATCAAAGTAGACTTTTTTCAACTAGGTGGTTCTCATGCCTTTTGAACTATTCGATTTGGGTCACCACACAAACACACTTCCAATCCTATTCGATGCGCATCGTTTGACGTCTATGGGAACTTCTTACCGCCGACCACCGTCTTTTAGATCTACACACCGGATTAATAATCGGTGGGGGCCACCACCGACAAGGACACCCTCCCCCCTTTATGCCCTTCCGGTGCTTAAGAGTGACTAAAGGTGGTAATGGACATGGGAACTTGGACATTTCCGTCGGAAGTTCCCGGCGGGGGCATTCCATTAGAGATTTATCAATAGAGACCATTAGTAGATTGGGGACCTGGAATTTTTGGTTGAGAAAAAAGGTCGAATCGCAAAAACTGTGTTTATCGGGKGCCCATAACATTGCGCCTATTTATTTCGGTTCCTATAAGATATATCAAAATGTGTCAACTGATAAAATGTTACTGATAATGTGAGAAACATTTTGTCAATTGACGACTTTTTTATATATCTTACAGAAAACGAGATACATGAGCTCAAAGTGTCGAATCAGTGGCACCCTATTGGCGACTCTACGAAGACCCTAACTTCAATCCAATGTATCTCGGTTTCTGTGAAAGGTGTCAAAATTGTGAACTGATAAAACCATTAGTGATATTATGATGAATGATTTATCAGTTTACGATTTTTGATATCTTTCAAAGAACCGAGATAATTGAGCTCAAAGTTTAGCTGCGACAGATCAGTGGCTACCTATTGGCGGCTCGGGGGACTTTAACTTCAAGCCGATTTATCTCGGTCCGTGTAACAGATGTCCGAAAATTGTTAACTGATAAAATGTTACTAATAATGTGATACACATTTCGTTAGTTAACCACTTTTTGATTTTTAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGGCCC</site>
                <isoschizomers>
                    <enzyme>ApaI</enzyme>
                    <enzyme>Bsp120I</enzyme>
                    <enzyme>PspOMI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>503 185 170 142</canonical_bands>
                <polymorphic_bands>645 185 170</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>503 185 170 142</canonical_bands>
                <polymorphic_bands>645 185 170</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>499 283 218</canonical_bands>
                <polymorphic_bands>717 283</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>283 218 185 142 107 22 17 14 12</canonical_bands>
                <polymorphic_bands>360 283 185 107 22 17 14 12</polymorphic_bands>
            </assay>
            <assay>
                <site>RGGNCCY</site>
                <isoschizomers>
                    <enzyme>DraII</enzyme>
                    <enzyme>EcoO109I</enzyme>
                    <enzyme>PssI</enzyme>
                </isoschizomers>
                <canonical_bands>501 442 57</canonical_bands>
                <polymorphic_bands>558 442</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>407 284 161 91 57</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAATTTTTGGTTGAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCAATAGGTAGCCACTGATCT</pcr_primer_p2>
		<pcr_amplicon_size>421</pcr_amplicon_size>
		<canonical_amplicon>GGAATTTTTGGTTGAGAAAAAAGGTCGAATCGCAAAAACTGTGTTTATCGGGGGCCCATAACATTGCGCCTATTTATTTCGGTTCCTATAAGATATATCAAAATGTGTCAACTGATAAAATGTTACTGATAATGTGAGAAACATTTTGTCAATTGACGACTTTTTTATATATCTTACAGAAAACGAGATACATGAGCTCAAAGTGTCGAATCAGTGGCACCCTATTGGCGACTCTACGAAGACCCTAACTTCAATCCAATGTATCTCGGTTTCTGTGAAAGGTGTCAAAATTGTGAACTGATAAAACCATTAGTGATATTATGATGAATGATTTATCAGTTTACGATTTTTGATATCTTTCAAAGAACCGAGATAATTGAGCTCAAAGTTTAGCTGCGACAGATCAGTGGCTACCTATTGG</canonical_amplicon>
		<polymorphic_amplicon>GGAATTTTTGGTTGAGAAAAAAGGTCGAATCGCAAAAACTGTGTTTATCGGGKGCCCATAACATTGCGCCTATTTATTTCGGTTCCTATAAGATATATCAAAATGTGTCAACTGATAAAATGTTACTGATAATGTGAGAAACATTTTGTCAATTGACGACTTTTTTATATATCTTACAGAAAACGAGATACATGAGCTCAAAGTGTCGAATCAGTGGCACCCTATTGGCGACTCTACGAAGACCCTAACTTCAATCCAATGTATCTCGGTTTCTGTGAAAGGTGTCAAAATTGTGAACTGATAAAACCATTAGTGATATTATGATGAATGATTTATCAGTTTACGATTTTTGATATCTTTCAAAGAACCGAGATAATTGAGCTCAAAGTTTAGCTGCGACAGATCAGTGGCTACCTATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39650</snp_id>
        <super_contig>c014200791.Contig3</super_contig>
        <contig_pos>63575</contig_pos>
        <strand>+</strand>
        <context>TCGGGKGCCC[A/C]Taacattgcg</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGGTTGAGAAAAAAGGTCGAATCGCAAAAACTGTGTTTATCGGGGGCCC</left_flank>
        <right_flank>TAACATTGCGCCTATTTATTTCGGTTCCTATAAGATATATCAAAATGTGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATATTATGACATACATTTTATCAGTTGACCAATTTTTGATATCTTGTATAGGAACCGAGATAATTGTCATCACAGGGCGATTGTAGTCCAAATAAGAAAATCAAAGTAGACTTTTTTCAACTAGGTGGTTCTCATGCCTTTTGAACTATTCGATTTGGGTCACCACACAAACACACTTCCAATCCTATTCGATGCGCATCGTTTGACGTCTATGGGAACTTCTTACCGCCGACCACCGTCTTTTAGATCTACACACCGGATTAATAATCGGTGGGGGCCACCACCGACAAGGACACCCTCCCCCCTTTATGCCCTTCCGGTGCTTAAGAGTGACTAAAGGTGGTAATGGACATGGGAACTTGGACATTTCCGTCGGAAGTTCCCGGCGGGGGCATTCCATTAGAGATTTATCAATAGAGACCATTAGTAGATTGGGGACCTGGAATTTTTGGTTGAGAAAAAAGGTCGAATCGCAAAAACTGTGTTTATCGGGGGCCCATAACATTGCGCCTATTTATTTCGGTTCCTATAAGATATATCAAAATGTGTCAACTGATAAAATGTTACTGATAATGTGAGAAACATTTTGTCAATTGACGACTTTTTTATATATCTTACAGAAAACGAGATACATGAGCTCAAAGTGTCGAATCAGTGGCACCCTATTGGCGACTCTACGAAGACCCTAACTTCAATCCAATGTATCTCGGTTTCTGTGAAAGGTGTCAAAATTGTGAACTGATAAAACCATTAGTGATATTATGATGAATGATTTATCAGTTTACGATTTTTGATATCTTTCAAAGAACCGAGATAATTGAGCTCAAAGTTTAGCTGCGACAGATCAGTGGCTACCTATTGGCGGCTCGGGGGACTTTAACTTCAAGCCGATTTATCTCGGTCCGTGTAACAGATGTCCGAAAATTGTTAACTGATAAAATGTTACTAATAATGTGATACACATTTCGTTAGTTAACCACTTTTTGATTTTTATCGCAG</canonical>
            <polymorphic>GATATTATGACATACATTTTATCAGTTGACCAATTTTTGATATCTTGTATAGGAACCGAGATAATTGTCATCACAGGGCGATTGTAGTCCAAATAAGAAAATCAAAGTAGACTTTTTTCAACTAGGTGGTTCTCATGCCTTTTGAACTATTCGATTTGGGTCACCACACAAACACACTTCCAATCCTATTCGATGCGCATCGTTTGACGTCTATGGGAACTTCTTACCGCCGACCACCGTCTTTTAGATCTACACACCGGATTAATAATCGGTGGGGGCCACCACCGACAAGGACACCCTCCCCCCTTTATGCCCTTCCGGTGCTTAAGAGTGACTAAAGGTGGTAATGGACATGGGAACTTGGACATTTCCGTCGGAAGTTCCCGGCGGGGGCATTCCATTAGAGATTTATCAATAGAGACCATTAGTAGATTGGGGACCTGGAATTTTTGGTTGAGAAAAAAGGTCGAATCGCAAAAACTGTGTTTATCGGGGGCCCMTAACATTGCGCCTATTTATTTCGGTTCCTATAAGATATATCAAAATGTGTCAACTGATAAAATGTTACTGATAATGTGAGAAACATTTTGTCAATTGACGACTTTTTTATATATCTTACAGAAAACGAGATACATGAGCTCAAAGTGTCGAATCAGTGGCACCCTATTGGCGACTCTACGAAGACCCTAACTTCAATCCAATGTATCTCGGTTTCTGTGAAAGGTGTCAAAATTGTGAACTGATAAAACCATTAGTGATATTATGATGAATGATTTATCAGTTTACGATTTTTGATATCTTTCAAAGAACCGAGATAATTGAGCTCAAAGTTTAGCTGCGACAGATCAGTGGCTACCTATTGGCGGCTCGGGGGACTTTAACTTCAAGCCGATTTATCTCGGTCCGTGTAACAGATGTCCGAAAATTGTTAACTGATAAAATGTTACTAATAATGTGATACACATTTCGTTAGTTAACCACTTTTTGATTTTTATCGCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGAATTTTTGGTTGAGAAAA</pcr_primer_p1>
		<pcr_primer_p2>CCAATAGGTAGCCACTGATCT</pcr_primer_p2>
		<pcr_amplicon_size>421</pcr_amplicon_size>
		<canonical_amplicon>GGAATTTTTGGTTGAGAAAAAAGGTCGAATCGCAAAAACTGTGTTTATCGGGGGCCCATAACATTGCGCCTATTTATTTCGGTTCCTATAAGATATATCAAAATGTGTCAACTGATAAAATGTTACTGATAATGTGAGAAACATTTTGTCAATTGACGACTTTTTTATATATCTTACAGAAAACGAGATACATGAGCTCAAAGTGTCGAATCAGTGGCACCCTATTGGCGACTCTACGAAGACCCTAACTTCAATCCAATGTATCTCGGTTTCTGTGAAAGGTGTCAAAATTGTGAACTGATAAAACCATTAGTGATATTATGATGAATGATTTATCAGTTTACGATTTTTGATATCTTTCAAAGAACCGAGATAATTGAGCTCAAAGTTTAGCTGCGACAGATCAGTGGCTACCTATTGG</canonical_amplicon>
		<polymorphic_amplicon>GGAATTTTTGGTTGAGAAAAAAGGTCGAATCGCAAAAACTGTGTTTATCGGGGGCCCMTAACATTGCGCCTATTTATTTCGGTTCCTATAAGATATATCAAAATGTGTCAACTGATAAAATGTTACTGATAATGTGAGAAACATTTTGTCAATTGACGACTTTTTTATATATCTTACAGAAAACGAGATACATGAGCTCAAAGTGTCGAATCAGTGGCACCCTATTGGCGACTCTACGAAGACCCTAACTTCAATCCAATGTATCTCGGTTTCTGTGAAAGGTGTCAAAATTGTGAACTGATAAAACCATTAGTGATATTATGATGAATGATTTATCAGTTTACGATTTTTGATATCTTTCAAAGAACCGAGATAATTGAGCTCAAAGTTTAGCTGCGACAGATCAGTGGCTACCTATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39651</snp_id>
        <super_contig>c014200791.Contig3</super_contig>
        <contig_pos>63748</contig_pos>
        <strand>+</strand>
        <context>CCTATTGGCG[A/G]CTCTACGAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACGAGATACATGAGCTCAAAGTGTCGAATCAGTGGCACCCTATTGGCG</left_flank>
        <right_flank>CTCTACGAAGACCCTAACTTCAATCCAATGTATCTCGGTTTCTGTGAAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACACTTCCAATCCTATTCGATGCGCATCGTTTGACGTCTATGGGAACTTCTTACCGCCGACCACCGTCTTTTAGATCTACACACCGGATTAATAATCGGTGGGGGCCACCACCGACAAGGACACCCTCCCCCCTTTATGCCCTTCCGGTGCTTAAGAGTGACTAAAGGTGGTAATGGACATGGGAACTTGGACATTTCCGTCGGAAGTTCCCGGCGGGGGCATTCCATTAGAGATTTATCAATAGAGACCATTAGTAGATTGGGGACCTGGAATTTTTGGTTGAGAAAAAAGGTCGAATCGCAAAAACTGTGTTTATCGGGGGCCCATAACATTGCGCCTATTTATTTCGGTTCCTATAAGATATATCAAAATGTGTCAACTGATAAAATGTTACTGATAATGTGAGAAACATTTTGTCAATTGACGACTTTTTTATATATCTTACAGAAAACGAGATACATGAGCTCAAAGTGTCGAATCAGTGGCACCCTATTGGCGACTCTACGAAGACCCTAACTTCAATCCAATGTATCTCGGTTTCTGTGAAAGGTGTCAAAATTGTGAACTGATAAAACCATTAGTGATATTATGATGAATGATTTATCAGTTTACGATTTTTGATATCTTTCAAAGAACCGAGATAATTGAGCTCAAAGTTTAGCTGCGACAGATCAGTGGCTACCTATTGGCGGCTCGGGGGACTTTAACTTCAAGCCGATTTATCTCGGTCCGTGTAACAGATGTCCGAAAATTGTTAACTGATAAAATGTTACTAATAATGTGATACACATTTCGTTAGTTAACCACTTTTTGATTTTTATCGCAGGAAGTTAGATACATTGGTTTAAAGTTTGGCTGCGACGAATCAGTGGCGGCTCTATGAAGTCTCTAACTTCAAGCCGATTTTTCTCACTTCCTGTGACAGATATCAAAAAATTGTCAACTTATAAAATATAGTTCAAATTATGATAAAGAAATTATCAGTTGACCAGTTTTTTA</canonical>
            <polymorphic>ACACTTCCAATCCTATTCGATGCGCATCGTTTGACGTCTATGGGAACTTCTTACCGCCGACCACCGTCTTTTAGATCTACACACCGGATTAATAATCGGTGGGGGCCACCACCGACAAGGACACCCTCCCCCCTTTATGCCCTTCCGGTGCTTAAGAGTGACTAAAGGTGGTAATGGACATGGGAACTTGGACATTTCCGTCGGAAGTTCCCGGCGGGGGCATTCCATTAGAGATTTATCAATAGAGACCATTAGTAGATTGGGGACCTGGAATTTTTGGTTGAGAAAAAAGGTCGAATCGCAAAAACTGTGTTTATCGGGGGCCCATAACATTGCGCCTATTTATTTCGGTTCCTATAAGATATATCAAAATGTGTCAACTGATAAAATGTTACTGATAATGTGAGAAACATTTTGTCAATTGACGACTTTTTTATATATCTTACAGAAAACGAGATACATGAGCTCAAAGTGTCGAATCAGTGGCACCCTATTGGCGRCTCTACGAAGACCCTAACTTCAATCCAATGTATCTCGGTTTCTGTGAAAGGTGTCAAAATTGTGAACTGATAAAACCATTAGTGATATTATGATGAATGATTTATCAGTTTACGATTTTTGATATCTTTCAAAGAACCGAGATAATTGAGCTCAAAGTTTAGCTGCGACAGATCAGTGGCTACCTATTGGCGGCTCGGGGGACTTTAACTTCAAGCCGATTTATCTCGGTCCGTGTAACAGATGTCCGAAAATTGTTAACTGATAAAATGTTACTAATAATGTGATACACATTTCGTTAGTTAACCACTTTTTGATTTTTATCGCAGGAAGTTAGATACATTGGTTTAAAGTTTGGCTGCGACGAATCAGTGGCGGCTCTATGAAGTCTCTAACTTCAAGCCGATTTTTCTCACTTCCTGTGACAGATATCAAAAAATTGTCAACTTATAAAATATAGTTCAAATTATGATAAAGAAATTATCAGTTGACCAGTTTTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>365 296 181 136 22</canonical_bands>
                <polymorphic_bands>387 296 181 136</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATCGCAAAAACTGTGTTTATC</pcr_primer_p1>
		<pcr_primer_p2>CCAATAGGTAGCCACTGATCT</pcr_primer_p2>
		<pcr_amplicon_size>394</pcr_amplicon_size>
		<canonical_amplicon>AATCGCAAAAACTGTGTTTATCGGGGGCCCATAACATTGCGCCTATTTATTTCGGTTCCTATAAGATATATCAAAATGTGTCAACTGATAAAATGTTACTGATAATGTGAGAAACATTTTGTCAATTGACGACTTTTTTATATATCTTACAGAAAACGAGATACATGAGCTCAAAGTGTCGAATCAGTGGCACCCTATTGGCGACTCTACGAAGACCCTAACTTCAATCCAATGTATCTCGGTTTCTGTGAAAGGTGTCAAAATTGTGAACTGATAAAACCATTAGTGATATTATGATGAATGATTTATCAGTTTACGATTTTTGATATCTTTCAAAGAACCGAGATAATTGAGCTCAAAGTTTAGCTGCGACAGATCAGTGGCTACCTATTGG</canonical_amplicon>
		<polymorphic_amplicon>AATCGCAAAAACTGTGTTTATCGGGGGCCCATAACATTGCGCCTATTTATTTCGGTTCCTATAAGATATATCAAAATGTGTCAACTGATAAAATGTTACTGATAATGTGAGAAACATTTTGTCAATTGACGACTTTTTTATATATCTTACAGAAAACGAGATACATGAGCTCAAAGTGTCGAATCAGTGGCACCCTATTGGCGRCTCTACGAAGACCCTAACTTCAATCCAATGTATCTCGGTTTCTGTGAAAGGTGTCAAAATTGTGAACTGATAAAACCATTAGTGATATTATGATGAATGATTTATCAGTTTACGATTTTTGATATCTTTCAAAGAACCGAGATAATTGAGCTCAAAGTTTAGCTGCGACAGATCAGTGGCTACCTATTGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39652</snp_id>
        <super_contig>c014200791.Contig3</super_contig>
        <contig_pos>147651</contig_pos>
        <strand></strand>
        <context>gattatttgg[G/A]ttctcagatt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GATTCTTGGATTCTTGGATTCTTGGATTCTTGGATTCTTGGATTATTTGG</left_flank>
        <right_flank>TTCTCAGATTCTTGAATTTTTAGATTCTTTAGATTCTTTGGTTTTCTAGA</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTTGGGTTGGGTTGGAACAGAAAATTCATTTAAAATTTAGATTTGAAATTTGAGAGTTGAAAAGAAAAATAGTGCAGAGAATTGAGAGAATTAGAGAAACGGATGGTTATTTGTTGTGACATCGAGAGACCAAAAGTCCCTTTGTTTACTGAACTCTTCAAACCGAAGACTAGACTCCATTTGTCAGAAAAAAGGTTTTTTGGTTTTGGGAAAAATTTTGGAAAACGGAAATTTGGAACTGGAAATTGTGAAGTTCGGAAATTCCTTAGTTTTATTGGATTTCCGTAGTTTTTGGATTTTGGATTCTTAGATTCTCGGGTTTTTAGATTTTTCGATTCTTTGGATTCTTGGATTCTTGAATTCTTGGATTCTTGGATTTTGGATTCTTGGATTTTTCGATTCTTTGGATTCATTGGATTTCTGGAACTTAGGATTCTTGGAATCTTGGATTCTTGGATTCTTGGATTCTTGGATTCTTGGATTCTTGGATTATTTGGGTTCTCAGATTCTTGAATTTTTAGATTCTTTAGATTCTTTGGTTTTCTAGAATTTTGGGTTTTGAATTTCTGGATTTTTAATATTTTTGGAAAATCGGAACTTTGGAAATTTAAAACTTTCAAAATTTAGAACATGGAAATTTGGAATTTTAGAACTTTTGAAGTTTCTAACTTTGGAATTCTGAAAACTTTGGAATTCCCAAAATTTGACTCTAACCGAAAATTCTAACTAATTAGACAAAGATTTTTAGTACATATACTGCCTGATTTTTTTAACGAAAATTCTGGTATTCTGTAAAAATGAAACTTTTCAGTTTCATAAAGTTTTCAATTTGATAACACTAATAGGATAGATAATATATCCGGGAATTAAAAAAATTATAATCTCCTTAATTCGAAATTCTTCGACATCTTTAATTATTAAGGACATTTTGATGCGAAAAGTACGTACTTATTACATTTATCATTAGTTGAATCAAATTAACAATTTTATGAAACTGC</canonical>
            <polymorphic>GTTTTGGGTTGGGTTGGAACAGAAAATTCATTTAAAATTTAGATTTGAAATTTGAGAGTTGAAAAGAAAAATAGTGCAGAGAATTGAGAGAATTAGAGAAACGGATGGTTATTTGTTGTGACATCGAGAGACCAAAAGTCCCTTTGTTTACTGAACTCTTCAAACCGAAGACTAGACTCCATTTGTCAGAAAAAAGGTTTTTTGGTTTTGGGAAAAATTTTGGAAAACGGAAATTTGGAACTGGAAATTGTGAAGTTCGGAAATTCCTTAGTTTTATTGGATTTCCGTAGTTTTTGGATTTTGGATTCTTAGATTCTCGGGTTTTTAGATTTTTCGATTCTTTGGATTCTTGGATTCTTGAATTCTTGGATTCTTGGATTTTGGATTCTTGGATTTTTCGATTCTTTGGATTCATTGGATTTCTGGAACTTAGGATTCTTGGAATCTTGGATTCTTGGATTCTTGGATTCTTGGATTCTTGGATTCTTGGATTATTTGGRTTCTCAGATTCTTGAATTTTTAGATTCTTTAGATTCTTTGGTTTTCTAGAATTTTGGGTTTTGAATTTCTGGATTTTTAATATTTTTGGAAAATCGGAACTTTGGAAATTTAAAACTTTCAAAATTTAGAACATGGAAATTTGGAATTTTAGAACTTTTGAAGTTTCTAACTTTGGAATTCTGAAAACTTTGGAATTCCCAAAATTTGACTCTAACCGAAAATTCTAACTAATTAGACAAAGATTTTTAGTACATATACTGCCTGATTTTTTTAACGAAAATTCTGGTATTCTGTAAAAATGAAACTTTTCAGTTTCATAAAGTTTTCAATTTGATAACACTAATAGGATAGATAATATATCCGGGAATTAAAAAAATTATAATCTCCTTAATTCGAAATTCTTCGACATCTTTAATTATTAAGGACATTTTGATGCGAAAAGTACGTACTTATTACATTTATCATTAGTTGAATCAAATTAACAATTTTATGAAACTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTCGGGTTTTTAGATTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTAGAATTTTCGGTTAGAGTCAA</pcr_primer_p2>
		<pcr_amplicon_size>414</pcr_amplicon_size>
		<canonical_amplicon>TCTCGGGTTTTTAGATTTTTCGATTCTTTGGATTCTTGGATTCTTGAATTCTTGGATTCTTGGATTTTGGATTCTTGGATTTTTCGATTCTTTGGATTCATTGGATTTCTGGAACTTAGGATTCTTGGAATCTTGGATTCTTGGATTCTTGGATTCTTGGATTCTTGGATTCTTGGATTATTTGGGTTCTCAGATTCTTGAATTTTTAGATTCTTTAGATTCTTTGGTTTTCTAGAATTTTGGGTTTTGAATTTCTGGATTTTTAATATTTTTGGAAAATCGGAACTTTGGAAATTTAAAACTTTCAAAATTTAGAACATGGAAATTTGGAATTTTAGAACTTTTGAAGTTTCTAACTTTGGAATTCTGAAAACTTTGGAATTCCCAAAATTTGACTCTAACCGAAAATTCTAA</canonical_amplicon>
		<polymorphic_amplicon>TCTCGGGTTTTTAGATTTTTCGATTCTTTGGATTCTTGGATTCTTGAATTCTTGGATTCTTGGATTTTGGATTCTTGGATTTTTCGATTCTTTGGATTCATTGGATTTCTGGAACTTAGGATTCTTGGAATCTTGGATTCTTGGATTCTTGGATTCTTGGATTCTTGGATTCTTGGATTATTTGGRTTCTCAGATTCTTGAATTTTTAGATTCTTTAGATTCTTTGGTTTTCTAGAATTTTGGGTTTTGAATTTCTGGATTTTTAATATTTTTGGAAAATCGGAACTTTGGAAATTTAAAACTTTCAAAATTTAGAACATGGAAATTTGGAATTTTAGAACTTTTGAAGTTTCTAACTTTGGAATTCTGAAAACTTTGGAATTCCCAAAATTTGACTCTAACCGAAAATTCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39653</snp_id>
        <super_contig>c014200791.Contig3</super_contig>
        <contig_pos>147734</contig_pos>
        <strand></strand>
        <context>atttttaata[T/C]ttttggaaaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTCTTTGGTTTTCTAGAATTTTGGGTTTTGAATTTCTGGATTTTTAATA</left_flank>
        <right_flank>TTTTGGAAAATCGGAACTTTGGAAATTTAAAACTTTCAAAATTTAGAACA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAGAGAATTAGAGAAACGGATGGTTATTTGTTGTGACATCGAGAGACCAAAAGTCCCTTTGTTTACTGAACTCTTCAAACCGAAGACTAGACTCCATTTGTCAGAAAAAAGGTTTTTTGGTTTTGGGAAAAATTTTGGAAAACGGAAATTTGGAACTGGAAATTGTGAAGTTCGGAAATTCCTTAGTTTTATTGGATTTCCGTAGTTTTTGGATTTTGGATTCTTAGATTCTCGGGTTTTTAGATTTTTCGATTCTTTGGATTCTTGGATTCTTGAATTCTTGGATTCTTGGATTTTGGATTCTTGGATTTTTCGATTCTTTGGATTCATTGGATTTCTGGAACTTAGGATTCTTGGAATCTTGGATTCTTGGATTCTTGGATTCTTGGATTCTTGGATTCTTGGATTATTTGGGTTCTCAGATTCTTGAATTTTTAGATTCTTTAGATTCTTTGGTTTTCTAGAATTTTGGGTTTTGAATTTCTGGATTTTTAATATTTTTGGAAAATCGGAACTTTGGAAATTTAAAACTTTCAAAATTTAGAACATGGAAATTTGGAATTTTAGAACTTTTGAAGTTTCTAACTTTGGAATTCTGAAAACTTTGGAATTCCCAAAATTTGACTCTAACCGAAAATTCTAACTAATTAGACAAAGATTTTTAGTACATATACTGCCTGATTTTTTTAACGAAAATTCTGGTATTCTGTAAAAATGAAACTTTTCAGTTTCATAAAGTTTTCAATTTGATAACACTAATAGGATAGATAATATATCCGGGAATTAAAAAAATTATAATCTCCTTAATTCGAAATTCTTCGACATCTTTAATTATTAAGGACATTTTGATGCGAAAAGTACGTACTTATTACATTTATCATTAGTTGAATCAAATTAACAATTTTATGAAACTGCAAACTTTTGATTTTTTTTTGGCAATTAAAGGAGGCGAGACAGCAAAAATTGCCTGTCATGAGTTCAACCCCTCATGGGGGTTC</canonical>
            <polymorphic>TTGAGAGAATTAGAGAAACGGATGGTTATTTGTTGTGACATCGAGAGACCAAAAGTCCCTTTGTTTACTGAACTCTTCAAACCGAAGACTAGACTCCATTTGTCAGAAAAAAGGTTTTTTGGTTTTGGGAAAAATTTTGGAAAACGGAAATTTGGAACTGGAAATTGTGAAGTTCGGAAATTCCTTAGTTTTATTGGATTTCCGTAGTTTTTGGATTTTGGATTCTTAGATTCTCGGGTTTTTAGATTTTTCGATTCTTTGGATTCTTGGATTCTTGAATTCTTGGATTCTTGGATTTTGGATTCTTGGATTTTTCGATTCTTTGGATTCATTGGATTTCTGGAACTTAGGATTCTTGGAATCTTGGATTCTTGGATTCTTGGATTCTTGGATTCTTGGATTCTTGGATTATTTGGGTTCTCAGATTCTTGAATTTTTAGATTCTTTAGATTCTTTGGTTTTCTAGAATTTTGGGTTTTGAATTTCTGGATTTTTAATAYTTTTGGAAAATCGGAACTTTGGAAATTTAAAACTTTCAAAATTTAGAACATGGAAATTTGGAATTTTAGAACTTTTGAAGTTTCTAACTTTGGAATTCTGAAAACTTTGGAATTCCCAAAATTTGACTCTAACCGAAAATTCTAACTAATTAGACAAAGATTTTTAGTACATATACTGCCTGATTTTTTTAACGAAAATTCTGGTATTCTGTAAAAATGAAACTTTTCAGTTTCATAAAGTTTTCAATTTGATAACACTAATAGGATAGATAATATATCCGGGAATTAAAAAAATTATAATCTCCTTAATTCGAAATTCTTCGACATCTTTAATTATTAAGGACATTTTGATGCGAAAAGTACGTACTTATTACATTTATCATTAGTTGAATCAAATTAACAATTTTATGAAACTGCAAACTTTTGATTTTTTTTTGGCAATTAAAGGAGGCGAGACAGCAAAAATTGCCTGTCATGAGTTCAACCCCTCATGGGGGTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCGGGTTTTTAGATTTTTC</pcr_primer_p1>
		<pcr_primer_p2>TTAGAATTTTCGGTTAGAGTCAA</pcr_primer_p2>
		<pcr_amplicon_size>414</pcr_amplicon_size>
		<canonical_amplicon>TCTCGGGTTTTTAGATTTTTCGATTCTTTGGATTCTTGGATTCTTGAATTCTTGGATTCTTGGATTTTGGATTCTTGGATTTTTCGATTCTTTGGATTCATTGGATTTCTGGAACTTAGGATTCTTGGAATCTTGGATTCTTGGATTCTTGGATTCTTGGATTCTTGGATTCTTGGATTATTTGGGTTCTCAGATTCTTGAATTTTTAGATTCTTTAGATTCTTTGGTTTTCTAGAATTTTGGGTTTTGAATTTCTGGATTTTTAATATTTTTGGAAAATCGGAACTTTGGAAATTTAAAACTTTCAAAATTTAGAACATGGAAATTTGGAATTTTAGAACTTTTGAAGTTTCTAACTTTGGAATTCTGAAAACTTTGGAATTCCCAAAATTTGACTCTAACCGAAAATTCTAA</canonical_amplicon>
		<polymorphic_amplicon>TCTCGGGTTTTTAGATTTTTCGATTCTTTGGATTCTTGGATTCTTGAATTCTTGGATTCTTGGATTTTGGATTCTTGGATTTTTCGATTCTTTGGATTCATTGGATTTCTGGAACTTAGGATTCTTGGAATCTTGGATTCTTGGATTCTTGGATTCTTGGATTCTTGGATTCTTGGATTATTTGGGTTCTCAGATTCTTGAATTTTTAGATTCTTTAGATTCTTTGGTTTTCTAGAATTTTGGGTTTTGAATTTCTGGATTTTTAATAYTTTTGGAAAATCGGAACTTTGGAAATTTAAAACTTTCAAAATTTAGAACATGGAAATTTGGAATTTTAGAACTTTTGAAGTTTCTAACTTTGGAATTCTGAAAACTTTGGAATTCCCAAAATTTGACTCTAACCGAAAATTCTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39654</snp_id>
        <super_contig>c014201010.Contig1</super_contig>
        <contig_pos>6093</contig_pos>
        <strand>+</strand>
        <context>TGTTATATTG[C/T]GATGTTATCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTATTTTTTTTTTTTGAAAATTTGAATGTCCCGCCCTATCTGTTATATTG</left_flank>
        <right_flank>GATGTTATCTAGAAACCAAAGTAGTCAGTTTTTAAACAAAATTATTGAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCTTAGAACGAGCTCAGTTCAAATCTGAACTCAAGATTGTGAAGTCTCCAAAATCCAAAAAAAAATTAGTCCTTTCTAAACTTTCTAGAGTTTCCTCAATTGCTCAGAACGTGGATTTTTTGAATTTTGATTTTCGCAGGACTCGAAGGACAATCTGAAGAATGTATAGTACTGTCGAGAAGGATTCGAGAAGCGATACAAAGGGAAATTCTGTATTATTATAGAAATAACAGGAGAATTGAGGATCCATCCATGAGATTGGCCAATTTATTGTCCCTTCTTCCAGCGTTACAGGTAGGAACTTTCAGATTTTTCTCTGAAATTCTGAAATTTGAAATTTTCAGCGCGCCACTCGTCGATTCCAAGAAGACGTGGAAATCAGTCACGTCTTCAATGTGTACTCAGTGGATGAGAAGTTCTATGAGATGTGCAATGGAAGATTTTGAACTATTTTTTTTTTTTGAAAATTTGAATGTCCCGCCCTATCTGTTATATTGCGATGTTATCTAGAAACCAAAGTAGTCAGTTTTTAAACAAAATTATTGAAACTGTGATAAGATAAAAACGGCTAATTTCAGTTATCAGAAGTTGAGAATCTCCTCCGAATTCGGAATTCTGGAGCCAAATTGGTCTTAAACGGACCAAAAATGGACTAAGAGTGCGCCGAAAATTAACTGAAAATTGACCAAAAACGGGTGAAAAACGGAGCAAAAAGGGACCAAGAGATATCTTCAGTCTGGATTTCAGAAATTCCGTAAATCTAAGAAATGCAGAAAATAATTCAGAAGTTCAGAAATTCATAGAATTCCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCATAGAATTCCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGA</canonical>
            <polymorphic>AAGCTTAGAACGAGCTCAGTTCAAATCTGAACTCAAGATTGTGAAGTCTCCAAAATCCAAAAAAAAATTAGTCCTTTCTAAACTTTCTAGAGTTTCCTCAATTGCTCAGAACGTGGATTTTTTGAATTTTGATTTTCGCAGGACTCGAAGGACAATCTGAAGAATGTATAGTACTGTCGAGAAGGATTCGAGAAGCGATACAAAGGGAAATTCTGTATTATTATAGAAATAACAGGAGAATTGAGGATCCATCCATGAGATTGGCCAATTTATTGTCCCTTCTTCCAGCGTTACAGGTAGGAACTTTCAGATTTTTCTCTGAAATTCTGAAATTTGAAATTTTCAGCGCGCCACTCGTCGATTCCAAGAAGACGTGGAAATCAGTCACGTCTTCAATGTGTACTCAGTGGATGAGAAGTTCTATGAGATGTGCAATGGAAGATTTTGAACTATTTTTTTTTTTTGAAAATTTGAATGTCCCGCCCTATCTGTTATATTGYGATGTTATCTAGAAACCAAAGTAGTCAGTTTTTAAACAAAATTATTGAAACTGTGATAAGATAAAAACGGCTAATTTCAGTTATCAGAAGTTGAGAATCTCCTCCGAATTCGGAATTCTGGAGCCAAATTGGTCTTAAACGGACCAAAAATGGACTAAGAGTGCGCCGAAAATTAACTGAAAATTGACCAAAAACGGGTGAAAAACGGAGCAAAAAGGGACCAAGAGATATCTTCAGTCTGGATTTCAGAAATTCCGTAAATCTAAGAAATGCAGAAAATAATTCAGAAGTTCAGAAATTCATAGAATTCCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCATAGAATTCCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGAAATTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGAAGACGTGGAAATCAGTC</pcr_primer_p1>
		<pcr_primer_p2>GAGGAGATTCTCAACTTCTGATA</pcr_primer_p2>
		<pcr_amplicon_size>239</pcr_amplicon_size>
		<canonical_amplicon>AAGAAGACGTGGAAATCAGTCACGTCTTCAATGTGTACTCAGTGGATGAGAAGTTCTATGAGATGTGCAATGGAAGATTTTGAACTATTTTTTTTTTTTGAAAATTTGAATGTCCCGCCCTATCTGTTATATTGCGATGTTATCTAGAAACCAAAGTAGTCAGTTTTTAAACAAAATTATTGAAACTGTGATAAGATAAAAACGGCTAATTTCAGTTATCAGAAGTTGAGAATCTCCTC</canonical_amplicon>
		<polymorphic_amplicon>AAGAAGACGTGGAAATCAGTCACGTCTTCAATGTGTACTCAGTGGATGAGAAGTTCTATGAGATGTGCAATGGAAGATTTTGAACTATTTTTTTTTTTTGAAAATTTGAATGTCCCGCCCTATCTGTTATATTGYGATGTTATCTAGAAACCAAAGTAGTCAGTTTTTAAACAAAATTATTGAAACTGTGATAAGATAAAAACGGCTAATTTCAGTTATCAGAAGTTGAGAATCTCCTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39656</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>12491</contig_pos>
        <strand>+</strand>
        <context>CTCCGCCCCT[C/T]TTTTGGCTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGTCATCAAGGGCGGCGCGCTCCAATCGTGCCGCCGAAGCTCCGCCCCT</left_flank>
        <right_flank>TTTTGGCTCCGCCCCTTTTCACACCTAATTACGGGTTGTGTGGGGATGAC</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTAAACCGAAAATTCATCGATTCTAAAAATACATTCAAACTTTTCCGGTTTTTTCGAAACTTTCAGACTAGATCAAACAAACCTAGATCTTGATTTTTGTAGTTGACAACTTTTTTGGAAAATTCCATCCCGAAGAGATATGCCACGTGGAAAGAAGGAGCTCGCGCATGTCATAGCTCCACCTCCTCCTTACTGCTATTTTGGCATACCAGCTCAAGGAGCACTTGCACAGAAAAGATGTCTACTAGGAAAATTAAGCTCTTAGATTGTTTAGTCTAGTTCGAAAGTTTCAAAAAAATTGGACTATTCTTTGTACCTTATTTGGGGATTTCAAAAGTAACAAATTCGTTAAAATTAAACAATTTTAGAAATTGGTTTGGACCATGAAGTAACACAAAAACTAGGTTTTCTAACTGATCATCATCAAAAGTGAACGGGACCGAGCGGGGGTCATCAAGGGCGGCGCGCTCCAATCGTGCCGCCGAAGCTCCGCCCCTCTTTTGGCTCCGCCCCTTTTCACACCTAATTACGGGTTGTGTGGGGATGACAAGCAAAGCAAAAAGATGACGAAGATGAGGAGATTTAATTAGAAATAACATATCCAAATAAGCTGGGCTACAGTAGGAAAAACACGAAATTAGGGGATGAGCAATAGGAACAGTTGATGATGGATGAGAGGGGTATGGATTACGTAAGATGGTCCAAAATTAAATGTTATGTAAGATTTGCAGAAAGAAGGTTAGGGCATGTTAGTATAAGAAAGTTTGAAAAAAAAAACGTTTTTTTGAAATATAAGAATTATTCTGAAAAGGTTCTGAAATTGTTGGAAACTCAAAAGTTGAATGAGCCTTTGATCATGGAAACTTGGAATTTCAGCATTTTCGAAGTTTGGGGATTAGAATTTGAAACCATTTAAAACTTTGGAGTCTCAGAATCACGGTGTTTCAGAATCTCACAATCCAAGAATCTCAAAGTCTTACTTTCGAAAAATTAACATT</canonical>
            <polymorphic>TTTTAAACCGAAAATTCATCGATTCTAAAAATACATTCAAACTTTTCCGGTTTTTTCGAAACTTTCAGACTAGATCAAACAAACCTAGATCTTGATTTTTGTAGTTGACAACTTTTTTGGAAAATTCCATCCCGAAGAGATATGCCACGTGGAAAGAAGGAGCTCGCGCATGTCATAGCTCCACCTCCTCCTTACTGCTATTTTGGCATACCAGCTCAAGGAGCACTTGCACAGAAAAGATGTCTACTAGGAAAATTAAGCTCTTAGATTGTTTAGTCTAGTTCGAAAGTTTCAAAAAAATTGGACTATTCTTTGTACCTTATTTGGGGATTTCAAAAGTAACAAATTCGTTAAAATTAAACAATTTTAGAAATTGGTTTGGACCATGAAGTAACACAAAAACTAGGTTTTCTAACTGATCATCATCAAAAGTGAACGGGACCGAGCGGGGGTCATCAAGGGCGGCGCGCTCCAATCGTGCCGCCGAAGCTCCGCCCCTYTTTTGGCTCCGCCCCTTTTCACACCTAATTACGGGTTGTGTGGGGATGACAAGCAAAGCAAAAAGATGACGAAGATGAGGAGATTTAATTAGAAATAACATATCCAAATAAGCTGGGCTACAGTAGGAAAAACACGAAATTAGGGGATGAGCAATAGGAACAGTTGATGATGGATGAGAGGGGTATGGATTACGTAAGATGGTCCAAAATTAAATGTTATGTAAGATTTGCAGAAAGAAGGTTAGGGCATGTTAGTATAAGAAAGTTTGAAAAAAAAAACGTTTTTTTGAAATATAAGAATTATTCTGAAAAGGTTCTGAAATTGTTGGAAACTCAAAAGTTGAATGAGCCTTTGATCATGGAAACTTGGAATTTCAGCATTTTCGAAGTTTGGGGATTAGAATTTGAAACCATTTAAAACTTTGGAGTCTCAGAATCACGGTGTTTCAGAATCTCACAATCCAAGAATCTCAAAGTCTTACTTTCGAAAAATTAACATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCATGAAGTAACACAAAAACT</pcr_primer_p1>
		<pcr_primer_p2>CCTACTGTAGCCCAGCTTATT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GACCATGAAGTAACACAAAAACTAGGTTTTCTAACTGATCATCATCAAAAGTGAACGGGACCGAGCGGGGGTCATCAAGGGCGGCGCGCTCCAATCGTGCCGCCGAAGCTCCGCCCCTCTTTTGGCTCCGCCCCTTTTCACACCTAATTACGGGTTGTGTGGGGATGACAAGCAAAGCAAAAAGATGACGAAGATGAGGAGATTTAATTAGAAATAACATATCCAAATAAGCTGGGCTACAGTAGG</canonical_amplicon>
		<polymorphic_amplicon>GACCATGAAGTAACACAAAAACTAGGTTTTCTAACTGATCATCATCAAAAGTGAACGGGACCGAGCGGGGGTCATCAAGGGCGGCGCGCTCCAATCGTGCCGCCGAAGCTCCGCCCCTYTTTTGGCTCCGCCCCTTTTCACACCTAATTACGGGTTGTGTGGGGATGACAAGCAAAGCAAAAAGATGACGAAGATGAGGAGATTTAATTAGAAATAACATATCCAAATAAGCTGGGCTACAGTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39657</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>12505</contig_pos>
        <strand>+</strand>
        <context>TGGCTCCGCC[C/T]CTTTTCACAC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGCGCGCTCCAATCGTGCCGCCGAAGCTCCGCCCCTCTTTTGGCTCCGCC</left_flank>
        <right_flank>CTTTTCACACCTAATTACGGGTTGTGTGGGGATGACAAGCAAAGCAAAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCATCGATTCTAAAAATACATTCAAACTTTTCCGGTTTTTTCGAAACTTTCAGACTAGATCAAACAAACCTAGATCTTGATTTTTGTAGTTGACAACTTTTTTGGAAAATTCCATCCCGAAGAGATATGCCACGTGGAAAGAAGGAGCTCGCGCATGTCATAGCTCCACCTCCTCCTTACTGCTATTTTGGCATACCAGCTCAAGGAGCACTTGCACAGAAAAGATGTCTACTAGGAAAATTAAGCTCTTAGATTGTTTAGTCTAGTTCGAAAGTTTCAAAAAAATTGGACTATTCTTTGTACCTTATTTGGGGATTTCAAAAGTAACAAATTCGTTAAAATTAAACAATTTTAGAAATTGGTTTGGACCATGAAGTAACACAAAAACTAGGTTTTCTAACTGATCATCATCAAAAGTGAACGGGACCGAGCGGGGGTCATCAAGGGCGGCGCGCTCCAATCGTGCCGCCGAAGCTCCGCCCCTCTTTTGGCTCCGCCCCTTTTCACACCTAATTACGGGTTGTGTGGGGATGACAAGCAAAGCAAAAAGATGACGAAGATGAGGAGATTTAATTAGAAATAACATATCCAAATAAGCTGGGCTACAGTAGGAAAAACACGAAATTAGGGGATGAGCAATAGGAACAGTTGATGATGGATGAGAGGGGTATGGATTACGTAAGATGGTCCAAAATTAAATGTTATGTAAGATTTGCAGAAAGAAGGTTAGGGCATGTTAGTATAAGAAAGTTTGAAAAAAAAAACGTTTTTTTGAAATATAAGAATTATTCTGAAAAGGTTCTGAAATTGTTGGAAACTCAAAAGTTGAATGAGCCTTTGATCATGGAAACTTGGAATTTCAGCATTTTCGAAGTTTGGGGATTAGAATTTGAAACCATTTAAAACTTTGGAGTCTCAGAATCACGGTGTTTCAGAATCTCACAATCCAAGAATCTCAAAGTCTTACTTTCGAAAAATTAACATTAAAATTAGTTCCAA</canonical>
            <polymorphic>TTCATCGATTCTAAAAATACATTCAAACTTTTCCGGTTTTTTCGAAACTTTCAGACTAGATCAAACAAACCTAGATCTTGATTTTTGTAGTTGACAACTTTTTTGGAAAATTCCATCCCGAAGAGATATGCCACGTGGAAAGAAGGAGCTCGCGCATGTCATAGCTCCACCTCCTCCTTACTGCTATTTTGGCATACCAGCTCAAGGAGCACTTGCACAGAAAAGATGTCTACTAGGAAAATTAAGCTCTTAGATTGTTTAGTCTAGTTCGAAAGTTTCAAAAAAATTGGACTATTCTTTGTACCTTATTTGGGGATTTCAAAAGTAACAAATTCGTTAAAATTAAACAATTTTAGAAATTGGTTTGGACCATGAAGTAACACAAAAACTAGGTTTTCTAACTGATCATCATCAAAAGTGAACGGGACCGAGCGGGGGTCATCAAGGGCGGCGCGCTCCAATCGTGCCGCCGAAGCTCCGCCCCTCTTTTGGCTCCGCCYCTTTTCACACCTAATTACGGGTTGTGTGGGGATGACAAGCAAAGCAAAAAGATGACGAAGATGAGGAGATTTAATTAGAAATAACATATCCAAATAAGCTGGGCTACAGTAGGAAAAACACGAAATTAGGGGATGAGCAATAGGAACAGTTGATGATGGATGAGAGGGGTATGGATTACGTAAGATGGTCCAAAATTAAATGTTATGTAAGATTTGCAGAAAGAAGGTTAGGGCATGTTAGTATAAGAAAGTTTGAAAAAAAAAACGTTTTTTTGAAATATAAGAATTATTCTGAAAAGGTTCTGAAATTGTTGGAAACTCAAAAGTTGAATGAGCCTTTGATCATGGAAACTTGGAATTTCAGCATTTTCGAAGTTTGGGGATTAGAATTTGAAACCATTTAAAACTTTGGAGTCTCAGAATCACGGTGTTTCAGAATCTCACAATCCAAGAATCTCAAAGTCTTACTTTCGAAAAATTAACATTAAAATTAGTTCCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCATGAAGTAACACAAAAACT</pcr_primer_p1>
		<pcr_primer_p2>CCTACTGTAGCCCAGCTTATT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GACCATGAAGTAACACAAAAACTAGGTTTTCTAACTGATCATCATCAAAAGTGAACGGGACCGAGCGGGGGTCATCAAGGGCGGCGCGCTCCAATCGTGCCGCCGAAGCTCCGCCCCTCTTTTGGCTCCGCCCCTTTTCACACCTAATTACGGGTTGTGTGGGGATGACAAGCAAAGCAAAAAGATGACGAAGATGAGGAGATTTAATTAGAAATAACATATCCAAATAAGCTGGGCTACAGTAGG</canonical_amplicon>
		<polymorphic_amplicon>GACCATGAAGTAACACAAAAACTAGGTTTTCTAACTGATCATCATCAAAAGTGAACGGGACCGAGCGGGGGTCATCAAGGGCGGCGCGCTCCAATCGTGCCGCCGAAGCTCCGCCCCTCTTTTGGCTCCGCCYCTTTTCACACCTAATTACGGGTTGTGTGGGGATGACAAGCAAAGCAAAAAGATGACGAAGATGAGGAGATTTAATTAGAAATAACATATCCAAATAAGCTGGGCTACAGTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39658</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>12534</contig_pos>
        <strand>+</strand>
        <context>GGGTTGTGTG[A/G]GGATGACAAG</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGCCCCTCTTTTGGCTCCGCCCCTTTTCACACCTAATTACGGGTTGTGTG</left_flank>
        <right_flank>GGATGACAAGCAAAGCAAAAAGATGACGAAGATGAGGAGATTTAATTAGA</right_flank>
        <qual_score>141</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCGGTTTTTTCGAAACTTTCAGACTAGATCAAACAAACCTAGATCTTGATTTTTGTAGTTGACAACTTTTTTGGAAAATTCCATCCCGAAGAGATATGCCACGTGGAAAGAAGGAGCTCGCGCATGTCATAGCTCCACCTCCTCCTTACTGCTATTTTGGCATACCAGCTCAAGGAGCACTTGCACAGAAAAGATGTCTACTAGGAAAATTAAGCTCTTAGATTGTTTAGTCTAGTTCGAAAGTTTCAAAAAAATTGGACTATTCTTTGTACCTTATTTGGGGATTTCAAAAGTAACAAATTCGTTAAAATTAAACAATTTTAGAAATTGGTTTGGACCATGAAGTAACACAAAAACTAGGTTTTCTAACTGATCATCATCAAAAGTGAACGGGACCGAGCGGGGGTCATCAAGGGCGGCGCGCTCCAATCGTGCCGCCGAAGCTCCGCCCCTCTTTTGGCTCCGCCCCTTTTCACACCTAATTACGGGTTGTGTGGGGATGACAAGCAAAGCAAAAAGATGACGAAGATGAGGAGATTTAATTAGAAATAACATATCCAAATAAGCTGGGCTACAGTAGGAAAAACACGAAATTAGGGGATGAGCAATAGGAACAGTTGATGATGGATGAGAGGGGTATGGATTACGTAAGATGGTCCAAAATTAAATGTTATGTAAGATTTGCAGAAAGAAGGTTAGGGCATGTTAGTATAAGAAAGTTTGAAAAAAAAAACGTTTTTTTGAAATATAAGAATTATTCTGAAAAGGTTCTGAAATTGTTGGAAACTCAAAAGTTGAATGAGCCTTTGATCATGGAAACTTGGAATTTCAGCATTTTCGAAGTTTGGGGATTAGAATTTGAAACCATTTAAAACTTTGGAGTCTCAGAATCACGGTGTTTCAGAATCTCACAATCCAAGAATCTCAAAGTCTTACTTTCGAAAAATTAACATTAAAATTAGTTCCAAGCTGTCTTTCAGAGGCTGATAAAACTTCA</canonical>
            <polymorphic>TTTCCGGTTTTTTCGAAACTTTCAGACTAGATCAAACAAACCTAGATCTTGATTTTTGTAGTTGACAACTTTTTTGGAAAATTCCATCCCGAAGAGATATGCCACGTGGAAAGAAGGAGCTCGCGCATGTCATAGCTCCACCTCCTCCTTACTGCTATTTTGGCATACCAGCTCAAGGAGCACTTGCACAGAAAAGATGTCTACTAGGAAAATTAAGCTCTTAGATTGTTTAGTCTAGTTCGAAAGTTTCAAAAAAATTGGACTATTCTTTGTACCTTATTTGGGGATTTCAAAAGTAACAAATTCGTTAAAATTAAACAATTTTAGAAATTGGTTTGGACCATGAAGTAACACAAAAACTAGGTTTTCTAACTGATCATCATCAAAAGTGAACGGGACCGAGCGGGGGTCATCAAGGGCGGCGCGCTCCAATCGTGCCGCCGAAGCTCCGCCCCTCTTTTGGCTCCGCCCCTTTTCACACCTAATTACGGGTTGTGTGRGGATGACAAGCAAAGCAAAAAGATGACGAAGATGAGGAGATTTAATTAGAAATAACATATCCAAATAAGCTGGGCTACAGTAGGAAAAACACGAAATTAGGGGATGAGCAATAGGAACAGTTGATGATGGATGAGAGGGGTATGGATTACGTAAGATGGTCCAAAATTAAATGTTATGTAAGATTTGCAGAAAGAAGGTTAGGGCATGTTAGTATAAGAAAGTTTGAAAAAAAAAACGTTTTTTTGAAATATAAGAATTATTCTGAAAAGGTTCTGAAATTGTTGGAAACTCAAAAGTTGAATGAGCCTTTGATCATGGAAACTTGGAATTTCAGCATTTTCGAAGTTTGGGGATTAGAATTTGAAACCATTTAAAACTTTGGAGTCTCAGAATCACGGTGTTTCAGAATCTCACAATCCAAGAATCTCAAAGTCTTACTTTCGAAAAATTAACATTAAAATTAGTTCCAAGCTGTCTTTCAGAGGCTGATAAAACTTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCATGAAGTAACACAAAAACT</pcr_primer_p1>
		<pcr_primer_p2>CCTACTGTAGCCCAGCTTATT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GACCATGAAGTAACACAAAAACTAGGTTTTCTAACTGATCATCATCAAAAGTGAACGGGACCGAGCGGGGGTCATCAAGGGCGGCGCGCTCCAATCGTGCCGCCGAAGCTCCGCCCCTCTTTTGGCTCCGCCCCTTTTCACACCTAATTACGGGTTGTGTGGGGATGACAAGCAAAGCAAAAAGATGACGAAGATGAGGAGATTTAATTAGAAATAACATATCCAAATAAGCTGGGCTACAGTAGG</canonical_amplicon>
		<polymorphic_amplicon>GACCATGAAGTAACACAAAAACTAGGTTTTCTAACTGATCATCATCAAAAGTGAACGGGACCGAGCGGGGGTCATCAAGGGCGGCGCGCTCCAATCGTGCCGCCGAAGCTCCGCCCCTCTTTTGGCTCCGCCCCTTTTCACACCTAATTACGGGTTGTGTGRGGATGACAAGCAAAGCAAAAAGATGACGAAGATGAGGAGATTTAATTAGAAATAACATATCCAAATAAGCTGGGCTACAGTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39659</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>12558</contig_pos>
        <strand>+</strand>
        <context>AGCAAAAAGA[G/T]GACGAAGATG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTTCACACCTAATTACGGGTTGTGTGGGGATGACAAGCAAAGCAAAAAGA</left_flank>
        <right_flank>GACGAAGATGAGGAGATTTAATTAGAAATAACATATCCAAATAAGCTGGG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GACTAGATCAAACAAACCTAGATCTTGATTTTTGTAGTTGACAACTTTTTTGGAAAATTCCATCCCGAAGAGATATGCCACGTGGAAAGAAGGAGCTCGCGCATGTCATAGCTCCACCTCCTCCTTACTGCTATTTTGGCATACCAGCTCAAGGAGCACTTGCACAGAAAAGATGTCTACTAGGAAAATTAAGCTCTTAGATTGTTTAGTCTAGTTCGAAAGTTTCAAAAAAATTGGACTATTCTTTGTACCTTATTTGGGGATTTCAAAAGTAACAAATTCGTTAAAATTAAACAATTTTAGAAATTGGTTTGGACCATGAAGTAACACAAAAACTAGGTTTTCTAACTGATCATCATCAAAAGTGAACGGGACCGAGCGGGGGTCATCAAGGGCGGCGCGCTCCAATCGTGCCGCCGAAGCTCCGCCCCTCTTTTGGCTCCGCCCCTTTTCACACCTAATTACGGGTTGTGTGGGGATGACAAGCAAAGCAAAAAGATGACGAAGATGAGGAGATTTAATTAGAAATAACATATCCAAATAAGCTGGGCTACAGTAGGAAAAACACGAAATTAGGGGATGAGCAATAGGAACAGTTGATGATGGATGAGAGGGGTATGGATTACGTAAGATGGTCCAAAATTAAATGTTATGTAAGATTTGCAGAAAGAAGGTTAGGGCATGTTAGTATAAGAAAGTTTGAAAAAAAAAACGTTTTTTTGAAATATAAGAATTATTCTGAAAAGGTTCTGAAATTGTTGGAAACTCAAAAGTTGAATGAGCCTTTGATCATGGAAACTTGGAATTTCAGCATTTTCGAAGTTTGGGGATTAGAATTTGAAACCATTTAAAACTTTGGAGTCTCAGAATCACGGTGTTTCAGAATCTCACAATCCAAGAATCTCAAAGTCTTACTTTCGAAAAATTAACATTAAAATTAGTTCCAAGCTGTCTTTCAGAGGCTGATAAAACTTCAAACCTGCTTTCATGGCCTAGCTTT</canonical>
            <polymorphic>GACTAGATCAAACAAACCTAGATCTTGATTTTTGTAGTTGACAACTTTTTTGGAAAATTCCATCCCGAAGAGATATGCCACGTGGAAAGAAGGAGCTCGCGCATGTCATAGCTCCACCTCCTCCTTACTGCTATTTTGGCATACCAGCTCAAGGAGCACTTGCACAGAAAAGATGTCTACTAGGAAAATTAAGCTCTTAGATTGTTTAGTCTAGTTCGAAAGTTTCAAAAAAATTGGACTATTCTTTGTACCTTATTTGGGGATTTCAAAAGTAACAAATTCGTTAAAATTAAACAATTTTAGAAATTGGTTTGGACCATGAAGTAACACAAAAACTAGGTTTTCTAACTGATCATCATCAAAAGTGAACGGGACCGAGCGGGGGTCATCAAGGGCGGCGCGCTCCAATCGTGCCGCCGAAGCTCCGCCCCTCTTTTGGCTCCGCCCCTTTTCACACCTAATTACGGGTTGTGTGGGGATGACAAGCAAAGCAAAAAGAKGACGAAGATGAGGAGATTTAATTAGAAATAACATATCCAAATAAGCTGGGCTACAGTAGGAAAAACACGAAATTAGGGGATGAGCAATAGGAACAGTTGATGATGGATGAGAGGGGTATGGATTACGTAAGATGGTCCAAAATTAAATGTTATGTAAGATTTGCAGAAAGAAGGTTAGGGCATGTTAGTATAAGAAAGTTTGAAAAAAAAAACGTTTTTTTGAAATATAAGAATTATTCTGAAAAGGTTCTGAAATTGTTGGAAACTCAAAAGTTGAATGAGCCTTTGATCATGGAAACTTGGAATTTCAGCATTTTCGAAGTTTGGGGATTAGAATTTGAAACCATTTAAAACTTTGGAGTCTCAGAATCACGGTGTTTCAGAATCTCACAATCCAAGAATCTCAAAGTCTTACTTTCGAAAAATTAACATTAAAATTAGTTCCAAGCTGTCTTTCAGAGGCTGATAAAACTTCAAACCTGCTTTCATGGCCTAGCTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCATGAAGTAACACAAAAACT</pcr_primer_p1>
		<pcr_primer_p2>CCTACTGTAGCCCAGCTTATT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>GACCATGAAGTAACACAAAAACTAGGTTTTCTAACTGATCATCATCAAAAGTGAACGGGACCGAGCGGGGGTCATCAAGGGCGGCGCGCTCCAATCGTGCCGCCGAAGCTCCGCCCCTCTTTTGGCTCCGCCCCTTTTCACACCTAATTACGGGTTGTGTGGGGATGACAAGCAAAGCAAAAAGATGACGAAGATGAGGAGATTTAATTAGAAATAACATATCCAAATAAGCTGGGCTACAGTAGG</canonical_amplicon>
		<polymorphic_amplicon>GACCATGAAGTAACACAAAAACTAGGTTTTCTAACTGATCATCATCAAAAGTGAACGGGACCGAGCGGGGGTCATCAAGGGCGGCGCGCTCCAATCGTGCCGCCGAAGCTCCGCCCCTCTTTTGGCTCCGCCCCTTTTCACACCTAATTACGGGTTGTGTGGGGATGACAAGCAAAGCAAAAAGAKGACGAAGATGAGGAGATTTAATTAGAAATAACATATCCAAATAAGCTGGGCTACAGTAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39660</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>12870</contig_pos>
        <strand>+</strand>
        <context>GGAATTTCAG[C/G]ATTTTCGAAG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GAAACTCAAAAGTTGAATGAGCCTTTGATCATGGAAACTTGGAATTTCAG</left_flank>
        <right_flank>ATTTTCGAAGTTTGGGGATTAGAATTTGAAACCATTTAAAACTTTGGAGT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGACCATGAAGTAACACAAAAACTAGGTTTTCTAACTGATCATCATCAAAAGTGAACGGGACCGAGCGGGGGTCATCAAGGGCGGCGCGCTCCAATCGTGCCGCCGAAGCTCCGCCCCTCTTTTGGCTCCGCCCCTTTTCACACCTAATTACGGGTTGTGTGGGGATGACAAGCAAAGCAAAAAGATGACGAAGATGAGGAGATTTAATTAGAAATAACATATCCAAATAAGCTGGGCTACAGTAGGAAAAACACGAAATTAGGGGATGAGCAATAGGAACAGTTGATGATGGATGAGAGGGGTATGGATTACGTAAGATGGTCCAAAATTAAATGTTATGTAAGATTTGCAGAAAGAAGGTTAGGGCATGTTAGTATAAGAAAGTTTGAAAAAAAAAACGTTTTTTTGAAATATAAGAATTATTCTGAAAAGGTTCTGAAATTGTTGGAAACTCAAAAGTTGAATGAGCCTTTGATCATGGAAACTTGGAATTTCAGCATTTTCGAAGTTTGGGGATTAGAATTTGAAACCATTTAAAACTTTGGAGTCTCAGAATCACGGTGTTTCAGAATCTCACAATCCAAGAATCTCAAAGTCTTACTTTCGAAAAATTAACATTAAAATTAGTTCCAAGCTGTCTTTCAGAGGCTGATAAAACTTCAAACCTGCTTTCATGGCCTAGCTTTCAAATGGTGGCCTAGCTTCCCCCTATTTTCAAATCCTAGTCCCCCCGTCCCTTTTGGCACTGAATTTCCTCCCTTACCGCAAAAGACACCCAACTAATTGCGCGTGTCATCTTGACATGTAATTGAGCCCGCGTAACTTACTTTAAAATTAAAATTGGGCTCTTTATCCGATGAGCGGTGTCCCTTCCCCCCTTTTGCTTAATTTGATGTCTTGACAACTTTCCAAGGGGGACTAGAAAGCCTAAAATCCAGTTTTCTCTAATGCAAACTAAAAGAAAAGTTCAAAAATATATCAAAATGACCTAGAAACCC</canonical>
            <polymorphic>TGGACCATGAAGTAACACAAAAACTAGGTTTTCTAACTGATCATCATCAAAAGTGAACGGGACCGAGCGGGGGTCATCAAGGGCGGCGCGCTCCAATCGTGCCGCCGAAGCTCCGCCCCTCTTTTGGCTCCGCCCCTTTTCACACCTAATTACGGGTTGTGTGGGGATGACAAGCAAAGCAAAAAGATGACGAAGATGAGGAGATTTAATTAGAAATAACATATCCAAATAAGCTGGGCTACAGTAGGAAAAACACGAAATTAGGGGATGAGCAATAGGAACAGTTGATGATGGATGAGAGGGGTATGGATTACGTAAGATGGTCCAAAATTAAATGTTATGTAAGATTTGCAGAAAGAAGGTTAGGGCATGTTAGTATAAGAAAGTTTGAAAAAAAAAACGTTTTTTTGAAATATAAGAATTATTCTGAAAAGGTTCTGAAATTGTTGGAAACTCAAAAGTTGAATGAGCCTTTGATCATGGAAACTTGGAATTTCAGSATTTTCGAAGTTTGGGGATTAGAATTTGAAACCATTTAAAACTTTGGAGTCTCAGAATCACGGTGTTTCAGAATCTCACAATCCAAGAATCTCAAAGTCTTACTTTCGAAAAATTAACATTAAAATTAGTTCCAAGCTGTCTTTCAGAGGCTGATAAAACTTCAAACCTGCTTTCATGGCCTAGCTTTCAAATGGTGGCCTAGCTTCCCCCTATTTTCAAATCCTAGTCCCCCCGTCCCTTTTGGCACTGAATTTCCTCCCTTACCGCAAAAGACACCCAACTAATTGCGCGTGTCATCTTGACATGTAATTGAGCCCGCGTAACTTACTTTAAAATTAAAATTGGGCTCTTTATCCGATGAGCGGTGTCCCTTCCCCCCTTTTGCTTAATTTGATGTCTTGACAACTTTCCAAGGGGGACTAGAAAGCCTAAAATCCAGTTTTCTCTAATGCAAACTAAAAGAAAAGTTCAAAAATATATCAAAATGACCTAGAAACCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGATTTGCAGAAAGAAGGTTA</pcr_primer_p1>
		<pcr_primer_p2>AGATTCTTGGATTGTGAGATTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAGATTTGCAGAAAGAAGGTTAGGGCATGTTAGTATAAGAAAGTTTGAAAAAAAAAACGTTTTTTTGAAATATAAGAATTATTCTGAAAAGGTTCTGAAATTGTTGGAAACTCAAAAGTTGAATGAGCCTTTGATCATGGAAACTTGGAATTTCAGCATTTTCGAAGTTTGGGGATTAGAATTTGAAACCATTTAAAACTTTGGAGTCTCAGAATCACGGTGTTTCAGAATCTCACAATCCAAGAATCT</canonical_amplicon>
		<polymorphic_amplicon>TAAGATTTGCAGAAAGAAGGTTAGGGCATGTTAGTATAAGAAAGTTTGAAAAAAAAAACGTTTTTTTGAAATATAAGAATTATTCTGAAAAGGTTCTGAAATTGTTGGAAACTCAAAAGTTGAATGAGCCTTTGATCATGGAAACTTGGAATTTCAGSATTTTCGAAGTTTGGGGATTAGAATTTGAAACCATTTAAAACTTTGGAGTCTCAGAATCACGGTGTTTCAGAATCTCACAATCCAAGAATCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39661</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>12914</contig_pos>
        <strand></strand>
        <context>ATTTAAAACT[T/A]TGGAGTCTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTCAGCATTTTCGAAGTTTGGGGATTAGAATTTGAAACCATTTAAAACT</left_flank>
        <right_flank>TGGAGTCTCAGAATCACGGTGTTTCAGAATCTCACAATCCAAGAATCTCA</right_flank>
        <qual_score>36</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATCAAAAGTGAACGGGACCGAGCGGGGGTCATCAAGGGCGGCGCGCTCCAATCGTGCCGCCGAAGCTCCGCCCCTCTTTTGGCTCCGCCCCTTTTCACACCTAATTACGGGTTGTGTGGGGATGACAAGCAAAGCAAAAAGATGACGAAGATGAGGAGATTTAATTAGAAATAACATATCCAAATAAGCTGGGCTACAGTAGGAAAAACACGAAATTAGGGGATGAGCAATAGGAACAGTTGATGATGGATGAGAGGGGTATGGATTACGTAAGATGGTCCAAAATTAAATGTTATGTAAGATTTGCAGAAAGAAGGTTAGGGCATGTTAGTATAAGAAAGTTTGAAAAAAAAAACGTTTTTTTGAAATATAAGAATTATTCTGAAAAGGTTCTGAAATTGTTGGAAACTCAAAAGTTGAATGAGCCTTTGATCATGGAAACTTGGAATTTCAGCATTTTCGAAGTTTGGGGATTAGAATTTGAAACCATTTAAAACTTTGGAGTCTCAGAATCACGGTGTTTCAGAATCTCACAATCCAAGAATCTCAAAGTCTTACTTTCGAAAAATTAACATTAAAATTAGTTCCAAGCTGTCTTTCAGAGGCTGATAAAACTTCAAACCTGCTTTCATGGCCTAGCTTTCAAATGGTGGCCTAGCTTCCCCCTATTTTCAAATCCTAGTCCCCCCGTCCCTTTTGGCACTGAATTTCCTCCCTTACCGCAAAAGACACCCAACTAATTGCGCGTGTCATCTTGACATGTAATTGAGCCCGCGTAACTTACTTTAAAATTAAAATTGGGCTCTTTATCCGATGAGCGGTGTCCCTTCCCCCCTTTTGCTTAATTTGATGTCTTGACAACTTTCCAAGGGGGACTAGAAAGCCTAAAATCCAGTTTTCTCTAATGCAAACTAAAAGAAAAGTTCAAAAATATATCAAAATGACCTAGAAACCCAAAAATCATGCCATGAAAAAAAGCAAAAGTTCGCAGTCAGCAGG</canonical>
            <polymorphic>CATCAAAAGTGAACGGGACCGAGCGGGGGTCATCAAGGGCGGCGCGCTCCAATCGTGCCGCCGAAGCTCCGCCCCTCTTTTGGCTCCGCCCCTTTTCACACCTAATTACGGGTTGTGTGGGGATGACAAGCAAAGCAAAAAGATGACGAAGATGAGGAGATTTAATTAGAAATAACATATCCAAATAAGCTGGGCTACAGTAGGAAAAACACGAAATTAGGGGATGAGCAATAGGAACAGTTGATGATGGATGAGAGGGGTATGGATTACGTAAGATGGTCCAAAATTAAATGTTATGTAAGATTTGCAGAAAGAAGGTTAGGGCATGTTAGTATAAGAAAGTTTGAAAAAAAAAACGTTTTTTTGAAATATAAGAATTATTCTGAAAAGGTTCTGAAATTGTTGGAAACTCAAAAGTTGAATGAGCCTTTGATCATGGAAACTTGGAATTTCAGCATTTTCGAAGTTTGGGGATTAGAATTTGAAACCATTTAAAACTWTGGAGTCTCAGAATCACGGTGTTTCAGAATCTCACAATCCAAGAATCTCAAAGTCTTACTTTCGAAAAATTAACATTAAAATTAGTTCCAAGCTGTCTTTCAGAGGCTGATAAAACTTCAAACCTGCTTTCATGGCCTAGCTTTCAAATGGTGGCCTAGCTTCCCCCTATTTTCAAATCCTAGTCCCCCCGTCCCTTTTGGCACTGAATTTCCTCCCTTACCGCAAAAGACACCCAACTAATTGCGCGTGTCATCTTGACATGTAATTGAGCCCGCGTAACTTACTTTAAAATTAAAATTGGGCTCTTTATCCGATGAGCGGTGTCCCTTCCCCCCTTTTGCTTAATTTGATGTCTTGACAACTTTCCAAGGGGGACTAGAAAGCCTAAAATCCAGTTTTCTCTAATGCAAACTAAAAGAAAAGTTCAAAAATATATCAAAATGACCTAGAAACCCAAAAATCATGCCATGAAAAAAAGCAAAAGTTCGCAGTCAGCAGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGAAGGTTAGGGCATGTTAGTAT</pcr_primer_p1>
		<pcr_primer_p2>AGACTTTGAGATTCTTGGATTGT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AGAAGGTTAGGGCATGTTAGTATAAGAAAGTTTGAAAAAAAAAACGTTTTTTTGAAATATAAGAATTATTCTGAAAAGGTTCTGAAATTGTTGGAAACTCAAAAGTTGAATGAGCCTTTGATCATGGAAACTTGGAATTTCAGCATTTTCGAAGTTTGGGGATTAGAATTTGAAACCATTTAAAACTTTGGAGTCTCAGAATCACGGTGTTTCAGAATCTCACAATCCAAGAATCTCAAAGTCT</canonical_amplicon>
		<polymorphic_amplicon>AGAAGGTTAGGGCATGTTAGTATAAGAAAGTTTGAAAAAAAAAACGTTTTTTTGAAATATAAGAATTATTCTGAAAAGGTTCTGAAATTGTTGGAAACTCAAAAGTTGAATGAGCCTTTGATCATGGAAACTTGGAATTTCAGCATTTTCGAAGTTTGGGGATTAGAATTTGAAACCATTTAAAACTWTGGAGTCTCAGAATCACGGTGTTTCAGAATCTCACAATCCAAGAATCTCAAAGTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39662</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>19925</contig_pos>
        <strand>+</strand>
        <context>GATTTTCTTG[G/T]TGGCTTGGAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GGATATCACAGCGTCAAGCCATTCATCGTATTTTCTGGATGATTTTCTTG</left_flank>
        <right_flank>TGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTGGAAATATACTAAAATTAGTGTTTTTAGAATCCAAAATTCTGGATTTTAGACAAAAAGATTTCCCAATTTTTTTCAGAATTTTTAGCGAAAAGCTTACATTCAGACTTGCACAACTTGGAAACCAACACTATTCCTCTTCTCGATAAGTCGAATTTTTGATTTTCCAAAAAATTCTCATGTCTTTTGGCTTCTTTGGAAGTCCAATTTTTGGGATCTTGTTTCACTGAAATTTTAGAAAAATCGATTTTTTTTCTGAAATTTTTCTTGGATTTTGAAATTTCTAAGTTCAACCAATTTTTGAGCTTTTCCAGGAATAATCTTAAATTTCTCAAAATTACTTAAAAAAATTTTTTTTTTAATTTCAGATAAAACTCACAAGCCCCTCCTGGATAGGCAGCCAACATCTTCTCCTTAGTATCCAATTCTCTGTATTCCTGGGCTTTCCTGGATATCACAGCGTCAAGCCATTCATCGTATTTTCTGGATGATTTTCTTGGTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAATCTCAAAAAGTTGAAAAAAATCTGTGTGTCCAGATGTCCGCTCTAAAAGTCTTTACCTATTCCATCCTCCTCTTCTTCACCATCATTATCCGTATCGTTCCGTCTTCTTTTTTCAGGTTTCTTTGGAAAAGTCCTCAAATTATCATTCAAAA</canonical>
            <polymorphic>GTGGAAATATACTAAAATTAGTGTTTTTAGAATCCAAAATTCTGGATTTTAGACAAAAAGATTTCCCAATTTTTTTCAGAATTTTTAGCGAAAAGCTTACATTCAGACTTGCACAACTTGGAAACCAACACTATTCCTCTTCTCGATAAGTCGAATTTTTGATTTTCCAAAAAATTCTCATGTCTTTTGGCTTCTTTGGAAGTCCAATTTTTGGGATCTTGTTTCACTGAAATTTTAGAAAAATCGATTTTTTTTCTGAAATTTTTCTTGGATTTTGAAATTTCTAAGTTCAACCAATTTTTGAGCTTTTCCAGGAATAATCTTAAATTTCTCAAAATTACTTAAAAAAATTTTTTTTTTAATTTCAGATAAAACTCACAAGCCCCTCCTGGATAGGCAGCCAACATCTTCTCCTTAGTATCCAATTCTCTGTATTCCTGGGCTTTCCTGGATATCACAGCGTCAAGCCATTCATCGTATTTTCTGGATGATTTTCTTGKTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAATCTCAAAAAGTTGAAAAAAATCTGTGTGTCCAGATGTCCGCTCTAAAAGTCTTTACCTATTCCATCCTCCTCTTCTTCACCATCATTATCCGTATCGTTCCGTCTTCTTTTTTCAGGTTTCTTTGGAAAAGTCCTCAAATTATCATTCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>152 151 96 96 90 79 73 59 54 51 45 20 17 10 3 2 2</canonical_bands>
                <polymorphic_bands>152 151 141 96 90 79 73 59 54 51 20 17 10 3 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTCCTTAGTATCCAATTCTCTG</pcr_primer_p1>
		<pcr_primer_p2>ATTTGGGAATGTCAGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>440</pcr_amplicon_size>
		<canonical_amplicon>TCTCCTTAGTATCCAATTCTCTGTATTCCTGGGCTTTCCTGGATATCACAGCGTCAAGCCATTCATCGTATTTTCTGGATGATTTTCTTGGTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAAT</canonical_amplicon>
		<polymorphic_amplicon>TCTCCTTAGTATCCAATTCTCTGTATTCCTGGGCTTTCCTGGATATCACAGCGTCAAGCCATTCATCGTATTTTCTGGATGATTTTCTTGKTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39663</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>20028</contig_pos>
        <strand></strand>
        <context>cctgtgaagg[T/A]tatcamaaat</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGG</left_flank>
        <right_flank>TATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATAT</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGACTTGCACAACTTGGAAACCAACACTATTCCTCTTCTCGATAAGTCGAATTTTTGATTTTCCAAAAAATTCTCATGTCTTTTGGCTTCTTTGGAAGTCCAATTTTTGGGATCTTGTTTCACTGAAATTTTAGAAAAATCGATTTTTTTTCTGAAATTTTTCTTGGATTTTGAAATTTCTAAGTTCAACCAATTTTTGAGCTTTTCCAGGAATAATCTTAAATTTCTCAAAATTACTTAAAAAAATTTTTTTTTTAATTTCAGATAAAACTCACAAGCCCCTCCTGGATAGGCAGCCAACATCTTCTCCTTAGTATCCAATTCTCTGTATTCCTGGGCTTTCCTGGATATCACAGCGTCAAGCCATTCATCGTATTTTCTGGATGATTTTCTTGGTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAATCTCAAAAAGTTGAAAAAAATCTGTGTGTCCAGATGTCCGCTCTAAAAGTCTTTACCTATTCCATCCTCCTCTTCTTCACCATCATTATCCGTATCGTTCCGTCTTCTTTTTTCAGGTTTCTTTGGAAAAGTCCTCAAATTATCATTCAAAATTTCGTTGGAAACTGAAAAAATGGGAATGTCTGTCTGTGTGTCCGGATGTCCATCTGGTTCCTCGAACTTTGTAATTTCAAAATTCGAAATTCTTGAACAATC</canonical>
            <polymorphic>CAGACTTGCACAACTTGGAAACCAACACTATTCCTCTTCTCGATAAGTCGAATTTTTGATTTTCCAAAAAATTCTCATGTCTTTTGGCTTCTTTGGAAGTCCAATTTTTGGGATCTTGTTTCACTGAAATTTTAGAAAAATCGATTTTTTTTCTGAAATTTTTCTTGGATTTTGAAATTTCTAAGTTCAACCAATTTTTGAGCTTTTCCAGGAATAATCTTAAATTTCTCAAAATTACTTAAAAAAATTTTTTTTTTAATTTCAGATAAAACTCACAAGCCCCTCCTGGATAGGCAGCCAACATCTTCTCCTTAGTATCCAATTCTCTGTATTCCTGGGCTTTCCTGGATATCACAGCGTCAAGCCATTCATCGTATTTTCTGGATGATTTTCTTGGTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGWTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAATCTCAAAAAGTTGAAAAAAATCTGTGTGTCCAGATGTCCGCTCTAAAAGTCTTTACCTATTCCATCCTCCTCTTCTTCACCATCATTATCCGTATCGTTCCGTCTTCTTTTTTCAGGTTTCTTTGGAAAAGTCCTCAAATTATCATTCAAAATTTCGTTGGAAACTGAAAAAATGGGAATGTCTGTCTGTGTGTCCGGATGTCCATCTGGTTCCTCGAACTTTGTAATTTCAAAATTCGAAATTCTTGAACAATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATTTTCTGGATGATTTTCTTG</pcr_primer_p1>
		<pcr_primer_p2>ATTTGGGAATGTCAGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>373</pcr_amplicon_size>
		<canonical_amplicon>GTATTTTCTGGATGATTTTCTTGGTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAAT</canonical_amplicon>
		<polymorphic_amplicon>GTATTTTCTGGATGATTTTCTTGGTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGWTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39664</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>20034</contig_pos>
        <strand></strand>
        <context>aaggwtatca[C/A]aaatttgtca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCA</left_flank>
        <right_flank>AAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGCACAACTTGGAAACCAACACTATTCCTCTTCTCGATAAGTCGAATTTTTGATTTTCCAAAAAATTCTCATGTCTTTTGGCTTCTTTGGAAGTCCAATTTTTGGGATCTTGTTTCACTGAAATTTTAGAAAAATCGATTTTTTTTCTGAAATTTTTCTTGGATTTTGAAATTTCTAAGTTCAACCAATTTTTGAGCTTTTCCAGGAATAATCTTAAATTTCTCAAAATTACTTAAAAAAATTTTTTTTTTAATTTCAGATAAAACTCACAAGCCCCTCCTGGATAGGCAGCCAACATCTTCTCCTTAGTATCCAATTCTCTGTATTCCTGGGCTTTCCTGGATATCACAGCGTCAAGCCATTCATCGTATTTTCTGGATGATTTTCTTGGTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAATCTCAAAAAGTTGAAAAAAATCTGTGTGTCCAGATGTCCGCTCTAAAAGTCTTTACCTATTCCATCCTCCTCTTCTTCACCATCATTATCCGTATCGTTCCGTCTTCTTTTTTCAGGTTTCTTTGGAAAAGTCCTCAAATTATCATTCAAAATTTCGTTGGAAACTGAAAAAATGGGAATGTCTGTCTGTGTGTCCGGATGTCCATCTGGTTCCTCGAACTTTGTAATTTCAAAATTCGAAATTCTTGAACAATCTGAAAT</canonical>
            <polymorphic>TGCACAACTTGGAAACCAACACTATTCCTCTTCTCGATAAGTCGAATTTTTGATTTTCCAAAAAATTCTCATGTCTTTTGGCTTCTTTGGAAGTCCAATTTTTGGGATCTTGTTTCACTGAAATTTTAGAAAAATCGATTTTTTTTCTGAAATTTTTCTTGGATTTTGAAATTTCTAAGTTCAACCAATTTTTGAGCTTTTCCAGGAATAATCTTAAATTTCTCAAAATTACTTAAAAAAATTTTTTTTTTAATTTCAGATAAAACTCACAAGCCCCTCCTGGATAGGCAGCCAACATCTTCTCCTTAGTATCCAATTCTCTGTATTCCTGGGCTTTCCTGGATATCACAGCGTCAAGCCATTCATCGTATTTTCTGGATGATTTTCTTGGTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCAMAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAATCTCAAAAAGTTGAAAAAAATCTGTGTGTCCAGATGTCCGCTCTAAAAGTCTTTACCTATTCCATCCTCCTCTTCTTCACCATCATTATCCGTATCGTTCCGTCTTCTTTTTTCAGGTTTCTTTGGAAAAGTCCTCAAATTATCATTCAAAATTTCGTTGGAAACTGAAAAAATGGGAATGTCTGTCTGTGTGTCCGGATGTCCATCTGGTTCCTCGAACTTTGTAATTTCAAAATTCGAAATTCTTGAACAATCTGAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>152 151 112 96 96 79 68 59 54 51 45 17 10 4 2 2 2</canonical_bands>
                <polymorphic_bands>152 151 112 96 96 79 69 68 54 51 45 17 4 2 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATTTTCTGGATGATTTTCTTG</pcr_primer_p1>
		<pcr_primer_p2>ATTTGGGAATGTCAGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>373</pcr_amplicon_size>
		<canonical_amplicon>GTATTTTCTGGATGATTTTCTTGGTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAAT</canonical_amplicon>
		<polymorphic_amplicon>GTATTTTCTGGATGATTTTCTTGGTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCAMAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39665</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>20152</contig_pos>
        <strand>+</strand>
        <context>cagtgtgagg[A/T]cccttctatt</context>
        <canonical_base>G</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGG</left_flank>
        <right_flank>CCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAATTTTAGAAAAATCGATTTTTTTTCTGAAATTTTTCTTGGATTTTGAAATTTCTAAGTTCAACCAATTTTTGAGCTTTTCCAGGAATAATCTTAAATTTCTCAAAATTACTTAAAAAAATTTTTTTTTTAATTTCAGATAAAACTCACAAGCCCCTCCTGGATAGGCAGCCAACATCTTCTCCTTAGTATCCAATTCTCTGTATTCCTGGGCTTTCCTGGATATCACAGCGTCAAGCCATTCATCGTATTTTCTGGATGATTTTCTTGGTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAATCTCAAAAAGTTGAAAAAAATCTGTGTGTCCAGATGTCCGCTCTAAAAGTCTTTACCTATTCCATCCTCCTCTTCTTCACCATCATTATCCGTATCGTTCCGTCTTCTTTTTTCAGGTTTCTTTGGAAAAGTCCTCAAATTATCATTCAAAATTTCGTTGGAAACTGAAAAAATGGGAATGTCTGTCTGTGTGTCCGGATGTCCATCTGGTTCCTCGAACTTTGTAATTTCAAAATTCGAAATTCTTGAACAATCTGAAATTGATTTTTTTTTTTGGAAAATTCAAAATAATTCTCAGTACCAATCCCATAACCATCGTCGTCTGGTTCCTCTAGTTTTGGAATTTCCAGCATTTTTTGAAATTTCTGGAAAAAATTTC</canonical>
            <polymorphic>TGAAATTTTAGAAAAATCGATTTTTTTTCTGAAATTTTTCTTGGATTTTGAAATTTCTAAGTTCAACCAATTTTTGAGCTTTTCCAGGAATAATCTTAAATTTCTCAAAATTACTTAAAAAAATTTTTTTTTTAATTTCAGATAAAACTCACAAGCCCCTCCTGGATAGGCAGCCAACATCTTCTCCTTAGTATCCAATTCTCTGTATTCCTGGGCTTTCCTGGATATCACAGCGTCAAGCCATTCATCGTATTTTCTGGATGATTTTCTTGGTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGWCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAATCTCAAAAAGTTGAAAAAAATCTGTGTGTCCAGATGTCCGCTCTAAAAGTCTTTACCTATTCCATCCTCCTCTTCTTCACCATCATTATCCGTATCGTTCCGTCTTCTTTTTTCAGGTTTCTTTGGAAAAGTCCTCAAATTATCATTCAAAATTTCGTTGGAAACTGAAAAAATGGGAATGTCTGTCTGTGTGTCCGGATGTCCATCTGGTTCCTCGAACTTTGTAATTTCAAAATTCGAAATTCTTGAACAATCTGAAATTGATTTTTTTTTTTGGAAAATTCAAAATAATTCTCAGTACCAATCCCATAACCATCGTCGTCTGGTTCCTCTAGTTTTGGAATTTCCAGCATTTTTTGAAATTTCTGGAAAAAATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGGCCC</site>
                <isoschizomers>
                    <enzyme>ApaI</enzyme>
                    <enzyme>Bsp120I</enzyme>
                    <enzyme>PspOMI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>498 329 173</canonical_bands>
                <polymorphic_bands>671 329</polymorphic_bands>
            </assay>
            <assay>
                <site>GKGCMC</site>
                <isoschizomers>
                    <enzyme>Bme1580I</enzyme>
                    <enzyme>BseSI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>498 329 173</canonical_bands>
                <polymorphic_bands>671 329</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>500 151 78 77 51 42 36 25 22 18</canonical_bands>
                <polymorphic_bands>651 78 77 51 42 36 25 22 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATTTTCTGGATGATTTTCTTG</pcr_primer_p1>
		<pcr_primer_p2>ATTTGGGAATGTCAGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>373</pcr_amplicon_size>
		<canonical_amplicon>GTATTTTCTGGATGATTTTCTTGGTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAAT</canonical_amplicon>
		<polymorphic_amplicon>GTATTTTCTGGATGATTTTCTTGGTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGWCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39666</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>20164</contig_pos>
        <strand></strand>
        <context>ccttctatta[C/A]aggttttacg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>GAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTA</left_flank>
        <right_flank>AGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATCGATTTTTTTTCTGAAATTTTTCTTGGATTTTGAAATTTCTAAGTTCAACCAATTTTTGAGCTTTTCCAGGAATAATCTTAAATTTCTCAAAATTACTTAAAAAAATTTTTTTTTTAATTTCAGATAAAACTCACAAGCCCCTCCTGGATAGGCAGCCAACATCTTCTCCTTAGTATCCAATTCTCTGTATTCCTGGGCTTTCCTGGATATCACAGCGTCAAGCCATTCATCGTATTTTCTGGATGATTTTCTTGGTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAATCTCAAAAAGTTGAAAAAAATCTGTGTGTCCAGATGTCCGCTCTAAAAGTCTTTACCTATTCCATCCTCCTCTTCTTCACCATCATTATCCGTATCGTTCCGTCTTCTTTTTTCAGGTTTCTTTGGAAAAGTCCTCAAATTATCATTCAAAATTTCGTTGGAAACTGAAAAAATGGGAATGTCTGTCTGTGTGTCCGGATGTCCATCTGGTTCCTCGAACTTTGTAATTTCAAAATTCGAAATTCTTGAACAATCTGAAATTGATTTTTTTTTTTGGAAAATTCAAAATAATTCTCAGTACCAATCCCATAACCATCGTCGTCTGGTTCCTCTAGTTTTGGAATTTCCAGCATTTTTTGAAATTTCTGGAAAAAATTTCTAGATTTTCAGA</canonical>
            <polymorphic>AAAATCGATTTTTTTTCTGAAATTTTTCTTGGATTTTGAAATTTCTAAGTTCAACCAATTTTTGAGCTTTTCCAGGAATAATCTTAAATTTCTCAAAATTACTTAAAAAAATTTTTTTTTTAATTTCAGATAAAACTCACAAGCCCCTCCTGGATAGGCAGCCAACATCTTCTCCTTAGTATCCAATTCTCTGTATTCCTGGGCTTTCCTGGATATCACAGCGTCAAGCCATTCATCGTATTTTCTGGATGATTTTCTTGGTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTAMAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAATCTCAAAAAGTTGAAAAAAATCTGTGTGTCCAGATGTCCGCTCTAAAAGTCTTTACCTATTCCATCCTCCTCTTCTTCACCATCATTATCCGTATCGTTCCGTCTTCTTTTTTCAGGTTTCTTTGGAAAAGTCCTCAAATTATCATTCAAAATTTCGTTGGAAACTGAAAAAATGGGAATGTCTGTCTGTGTGTCCGGATGTCCATCTGGTTCCTCGAACTTTGTAATTTCAAAATTCGAAATTCTTGAACAATCTGAAATTGATTTTTTTTTTTGGAAAATTCAAAATAATTCTCAGTACCAATCCCATAACCATCGTCGTCTGGTTCCTCTAGTTTTGGAATTTCCAGCATTTTTTGAAATTTCTGGAAAAAATTTCTAGATTTTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATTTTCTGGATGATTTTCTTG</pcr_primer_p1>
		<pcr_primer_p2>ATTTGGGAATGTCAGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>373</pcr_amplicon_size>
		<canonical_amplicon>GTATTTTCTGGATGATTTTCTTGGTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAAT</canonical_amplicon>
		<polymorphic_amplicon>GTATTTTCTGGATGATTTTCTTGGTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTAMAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39667</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>20205</contig_pos>
        <strand>+</strand>
        <context>TAAAATTTTT[C/G]AAAAAAATTG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTT</left_flank>
        <right_flank>AAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTCTAAGTTCAACCAATTTTTGAGCTTTTCCAGGAATAATCTTAAATTTCTCAAAATTACTTAAAAAAATTTTTTTTTTAATTTCAGATAAAACTCACAAGCCCCTCCTGGATAGGCAGCCAACATCTTCTCCTTAGTATCCAATTCTCTGTATTCCTGGGCTTTCCTGGATATCACAGCGTCAAGCCATTCATCGTATTTTCTGGATGATTTTCTTGGTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAATCTCAAAAAGTTGAAAAAAATCTGTGTGTCCAGATGTCCGCTCTAAAAGTCTTTACCTATTCCATCCTCCTCTTCTTCACCATCATTATCCGTATCGTTCCGTCTTCTTTTTTCAGGTTTCTTTGGAAAAGTCCTCAAATTATCATTCAAAATTTCGTTGGAAACTGAAAAAATGGGAATGTCTGTCTGTGTGTCCGGATGTCCATCTGGTTCCTCGAACTTTGTAATTTCAAAATTCGAAATTCTTGAACAATCTGAAATTGATTTTTTTTTTTGGAAAATTCAAAATAATTCTCAGTACCAATCCCATAACCATCGTCGTCTGGTTCCTCTAGTTTTGGAATTTCCAGCATTTTTTGAAATTTCTGGAAAAAATTTCTAGATTTTCAGACAAATTTTAAACAGAAAAATACTTGAAAATCGATATTTCGA</canonical>
            <polymorphic>TTTCTAAGTTCAACCAATTTTTGAGCTTTTCCAGGAATAATCTTAAATTTCTCAAAATTACTTAAAAAAATTTTTTTTTTAATTTCAGATAAAACTCACAAGCCCCTCCTGGATAGGCAGCCAACATCTTCTCCTTAGTATCCAATTCTCTGTATTCCTGGGCTTTCCTGGATATCACAGCGTCAAGCCATTCATCGTATTTTCTGGATGATTTTCTTGGTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTSAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAATCTCAAAAAGTTGAAAAAAATCTGTGTGTCCAGATGTCCGCTCTAAAAGTCTTTACCTATTCCATCCTCCTCTTCTTCACCATCATTATCCGTATCGTTCCGTCTTCTTTTTTCAGGTTTCTTTGGAAAAGTCCTCAAATTATCATTCAAAATTTCGTTGGAAACTGAAAAAATGGGAATGTCTGTCTGTGTGTCCGGATGTCCATCTGGTTCCTCGAACTTTGTAATTTCAAAATTCGAAATTCTTGAACAATCTGAAATTGATTTTTTTTTTTGGAAAATTCAAAATAATTCTCAGTACCAATCCCATAACCATCGTCGTCTGGTTCCTCTAGTTTTGGAATTTCCAGCATTTTTTGAAATTTCTGGAAAAAATTTCTAGATTTTCAGACAAATTTTAAACAGAAAAATACTTGAAAATCGATATTTCGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 468 33</canonical_bands>
                <polymorphic_bands>967 33</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>468 348 71 43 34 19 17</canonical_bands>
                <polymorphic_bands>539 348 43 34 19 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATTTTCTGGATGATTTTCTTG</pcr_primer_p1>
		<pcr_primer_p2>ATTTGGGAATGTCAGGTTTT</pcr_primer_p2>
		<pcr_amplicon_size>373</pcr_amplicon_size>
		<canonical_amplicon>GTATTTTCTGGATGATTTTCTTGGTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAAT</canonical_amplicon>
		<polymorphic_amplicon>GTATTTTCTGGATGATTTTCTTGGTGGCTTGGAATATTCTGGAAAAATATAATAACTGTAAAACCTGTAATAAAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTSAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39668</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>20473</contig_pos>
        <strand>+</strand>
        <context>TGTGTCCGGA[A/T]GTCCATCTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AAATTTCGTTGGAAACTGAAAAAATGGGAATGTCTGTCTGTGTGTCCGGA</left_flank>
        <right_flank>GTCCATCTGGTTCCTCGAACTTTGTAATTTCAAAATTCGAAATTCTTGAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAATCTCAAAAAGTTGAAAAAAATCTGTGTGTCCAGATGTCCGCTCTAAAAGTCTTTACCTATTCCATCCTCCTCTTCTTCACCATCATTATCCGTATCGTTCCGTCTTCTTTTTTCAGGTTTCTTTGGAAAAGTCCTCAAATTATCATTCAAAATTTCGTTGGAAACTGAAAAAATGGGAATGTCTGTCTGTGTGTCCGGATGTCCATCTGGTTCCTCGAACTTTGTAATTTCAAAATTCGAAATTCTTGAACAATCTGAAATTGATTTTTTTTTTTGGAAAATTCAAAATAATTCTCAGTACCAATCCCATAACCATCGTCGTCTGGTTCCTCTAGTTTTGGAATTTCCAGCATTTTTTGAAATTTCTGGAAAAAATTTCTAGATTTTCAGACAAATTTTAAACAGAAAAATACTTGAAAATCGATATTTCGACTTGAATTCAAAAAATTGAAATTTGAAAAAAATCGGGCAAATTTATTCAAATTAGTCATGATAATAAGTTGAGACATTCACAGGGAAACATAAATGAGTATTACAGTAAGAATTTACAGAAATAATAAAATCAAAAAATTTGATTTTTTGAATTTTTCGAAGTTTTGAAAATTTTCAAAAATCGCAAAATTCTGAAAAAAAAAATCAAAATCTTCAATTCTTTTTCTTCCAAAACGAGTCGATTGTCGCCACTTTCTTCGTCGTCCCC</canonical>
            <polymorphic>AAAGGGCTCTCTAACTTCCAACTTTTAGCCCATATATCTCGATTCCTGTGAAGGTTATCACAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAATCTCAAAAAGTTGAAAAAAATCTGTGTGTCCAGATGTCCGCTCTAAAAGTCTTTACCTATTCCATCCTCCTCTTCTTCACCATCATTATCCGTATCGTTCCGTCTTCTTTTTTCAGGTTTCTTTGGAAAAGTCCTCAAATTATCATTCAAAATTTCGTTGGAAACTGAAAAAATGGGAATGTCTGTCTGTGTGTCCGGAWGTCCATCTGGTTCCTCGAACTTTGTAATTTCAAAATTCGAAATTCTTGAACAATCTGAAATTGATTTTTTTTTTTGGAAAATTCAAAATAATTCTCAGTACCAATCCCATAACCATCGTCGTCTGGTTCCTCTAGTTTTGGAATTTCCAGCATTTTTTGAAATTTCTGGAAAAAATTTCTAGATTTTCAGACAAATTTTAAACAGAAAAATACTTGAAAATCGATATTTCGACTTGAATTCAAAAAATTGAAATTTGAAAAAAATCGGGCAAATTTATTCAAATTAGTCATGATAATAAGTTGAGACATTCACAGGGAAACATAAATGAGTATTACAGTAAGAATTTACAGAAATAATAAAATCAAAAAATTTGATTTTTTGAATTTTTCGAAGTTTTGAAAATTTTCAAAAATCGCAAAATTCTGAAAAAAAAAATCAAAATCTTCAATTCTTTTTCTTCCAAAACGAGTCGATTGTCGCCACTTTCTTCGTCGTCCCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATNNNNATC</site>
                <isoschizomers>
                    <enzyme>BsaBI</enzyme>
                    <enzyme>Bse8I</enzyme>
                    <enzyme>BseJI</enzyme>
                    <enzyme>BsiBI</enzyme>
                    <enzyme>BsrBRI</enzyme>
                    <enzyme>MamI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTCTTCTTCACCATCATTATCC</pcr_primer_p1>
		<pcr_primer_p2>TATGGGATTGGTACTGAGAATTA</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>CTCTTCTTCACCATCATTATCCGTATCGTTCCGTCTTCTTTTTTCAGGTTTCTTTGGAAAAGTCCTCAAATTATCATTCAAAATTTCGTTGGAAACTGAAAAAATGGGAATGTCTGTCTGTGTGTCCGGATGTCCATCTGGTTCCTCGAACTTTGTAATTTCAAAATTCGAAATTCTTGAACAATCTGAAATTGATTTTTTTTTTTGGAAAATTCAAAATAATTCTCAGTACCAATCCCATA</canonical_amplicon>
		<polymorphic_amplicon>CTCTTCTTCACCATCATTATCCGTATCGTTCCGTCTTCTTTTTTCAGGTTTCTTTGGAAAAGTCCTCAAATTATCATTCAAAATTTCGTTGGAAACTGAAAAAATGGGAATGTCTGTCTGTGTGTCCGGAWGTCCATCTGGTTCCTCGAACTTTGTAATTTCAAAATTCGAAATTCTTGAACAATCTGAAATTGATTTTTTTTTTTGGAAAATTCAAAATAATTCTCAGTACCAATCCCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39669</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>20533</contig_pos>
        <strand>+</strand>
        <context>ACAATCTGAA[A/T]TTGATTTTTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTCCTCGAACTTTGTAATTTCAAAATTCGAAATTCTTGAACAATCTGAA</left_flank>
        <right_flank>TTGATTTTTTTTTTTGGAAAATTCAAAATAATTCTCAGTACCAATCCCAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAATCTCAAAAAGTTGAAAAAAATCTGTGTGTCCAGATGTCCGCTCTAAAAGTCTTTACCTATTCCATCCTCCTCTTCTTCACCATCATTATCCGTATCGTTCCGTCTTCTTTTTTCAGGTTTCTTTGGAAAAGTCCTCAAATTATCATTCAAAATTTCGTTGGAAACTGAAAAAATGGGAATGTCTGTCTGTGTGTCCGGATGTCCATCTGGTTCCTCGAACTTTGTAATTTCAAAATTCGAAATTCTTGAACAATCTGAAATTGATTTTTTTTTTTGGAAAATTCAAAATAATTCTCAGTACCAATCCCATAACCATCGTCGTCTGGTTCCTCTAGTTTTGGAATTTCCAGCATTTTTTGAAATTTCTGGAAAAAATTTCTAGATTTTCAGACAAATTTTAAACAGAAAAATACTTGAAAATCGATATTTCGACTTGAATTCAAAAAATTGAAATTTGAAAAAAATCGGGCAAATTTATTCAAATTAGTCATGATAATAAGTTGAGACATTCACAGGGAAACATAAATGAGTATTACAGTAAGAATTTACAGAAATAATAAAATCAAAAAATTTGATTTTTTGAATTTTTCGAAGTTTTGAAAATTTTCAAAAATCGCAAAATTCTGAAAAAAAAAATCAAAATCTTCAATTCTTTTTCTTCCAAAACGAGTCGATTGTCGCCACTTTCTTCGTCGTCCCCATCTGATTCTTCTCTTGGATTTTTCGCTTTTTAGGCGGCGCCAAATTTGAATTTTGAGAT</canonical>
            <polymorphic>CAAATTTGTCAACTGATAAATTGTTTATCATAATATTACCAATATTTTATTAGTTGACACAGTTTTGATATCTTTTACAGGAACCGAGATAAATTGTCTTAAAGTTGACAGTGTGAGGGCCCTTCTATTACAGGTTTTACGGAATGCTGAACAAGAGTATCTAAAATTTTTAAAAAAAATTGGATCTCAAAAACTCTGAAAATAACTGTAAAAAAACCGAAAAAACCTGACATTCCCAAATCTCAAAAAGTTGAAAAAAATCTGTGTGTCCAGATGTCCGCTCTAAAAGTCTTTACCTATTCCATCCTCCTCTTCTTCACCATCATTATCCGTATCGTTCCGTCTTCTTTTTTCAGGTTTCTTTGGAAAAGTCCTCAAATTATCATTCAAAATTTCGTTGGAAACTGAAAAAATGGGAATGTCTGTCTGTGTGTCCGGATGTCCATCTGGTTCCTCGAACTTTGTAATTTCAAAATTCGAAATTCTTGAACAATCTGAAWTTGATTTTTTTTTTTGGAAAATTCAAAATAATTCTCAGTACCAATCCCATAACCATCGTCGTCTGGTTCCTCTAGTTTTGGAATTTCCAGCATTTTTTGAAATTTCTGGAAAAAATTTCTAGATTTTCAGACAAATTTTAAACAGAAAAATACTTGAAAATCGATATTTCGACTTGAATTCAAAAAATTGAAATTTGAAAAAAATCGGGCAAATTTATTCAAATTAGTCATGATAATAAGTTGAGACATTCACAGGGAAACATAAATGAGTATTACAGTAAGAATTTACAGAAATAATAAAATCAAAAAATTTGATTTTTTGAATTTTTCGAAGTTTTGAAAATTTTCAAAAATCGCAAAATTCTGAAAAAAAAAATCAAAATCTTCAATTCTTTTTCTTCCAAAACGAGTCGATTGTCGCCACTTTCTTCGTCGTCCCCATCTGATTCTTCTCTTGGATTTTTCGCTTTTTAGGCGGCGCCAAATTTGAATTTTGAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>200 96 75 73 73 61 52 43 28 26 21 20 20 19 19 18 18 16 14 13 13 13 11 10 10 9 8 7 6 6 2</canonical_bands>
                <polymorphic_bands>200 96 75 73 73 61 52 43 39 28 26 20 20 19 19 18 16 14 13 13 13 11 10 10 9 8 7 6 6 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTCTTCTTCACCATCATTATC</pcr_primer_p1>
		<pcr_primer_p2>GATGGTTATGGGATTGGTACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CCTCTTCTTCACCATCATTATCCGTATCGTTCCGTCTTCTTTTTTCAGGTTTCTTTGGAAAAGTCCTCAAATTATCATTCAAAATTTCGTTGGAAACTGAAAAAATGGGAATGTCTGTCTGTGTGTCCGGATGTCCATCTGGTTCCTCGAACTTTGTAATTTCAAAATTCGAAATTCTTGAACAATCTGAAATTGATTTTTTTTTTTGGAAAATTCAAAATAATTCTCAGTACCAATCCCATAACCATC</canonical_amplicon>
		<polymorphic_amplicon>CCTCTTCTTCACCATCATTATCCGTATCGTTCCGTCTTCTTTTTTCAGGTTTCTTTGGAAAAGTCCTCAAATTATCATTCAAAATTTCGTTGGAAACTGAAAAAATGGGAATGTCTGTCTGTGTGTCCGGATGTCCATCTGGTTCCTCGAACTTTGTAATTTCAAAATTCGAAATTCTTGAACAATCTGAAWTTGATTTTTTTTTTTGGAAAATTCAAAATAATTCTCAGTACCAATCCCATAACCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39670</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>22698</contig_pos>
        <strand></strand>
        <context>tccagaattt[C/T]cgagatttyc</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAATTTCTAGAATTTTCGATTTTGGAAGCTTTTGGAAATTCCAGAATTT</left_flank>
        <right_flank>CGAGATTTTCAGAATTTCGAATTTATCGATTTTTAAGAATTTTTTGAATT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GATCCGATGAAGATGGGCGGCCTGGAAGGCCTAGGGCGGTTCTGGAAAATTCGAATTTTTGAAAATTTTCAAAAATTCAATTTTGTTCAGTGGAGGATTTTTAGCTTTTTTTTGTTGAAAATTTTAAAAATGTGAATTTTTGTTCAATGGAGCGCGCTTTTTCTGAATTCTACCTCAAAAAAGATTCCTGAGTCAGTTGTGAGAAGCATAATGGGAAGAGCGACGCCTTCTGAAGCATATCGCCAACGGTTCGGATGTCCATGGATTGGAGATGAGCTTCAGAGACCCGTCCGATGCCACCGACCTGGAAAAGGATAGGGAAAATGGGCGGGAAATTTGAAAATTTGATTTTTTTGAAATTCCGGGAATTTTCAATTTTCGACATTTTCCAGAATTATAAGTTGTTCAATTTTAAGCGTTTCCAGAGTTTTCAAAAATTTCGGATTGTTAAAATTTCTAGAATTTTCGATTTTGGAAGCTTTTGGAAATTCCAGAATTTCCGAGATTTTCAGAATTTCGAATTTATCGATTTTTAAGAATTTTTTGAATTTTCAAAAAAACATTTTGAAATTTTTTCGAAAATTTCAGCTTTTTCCCTATAATTCTCCTCAATTTTCTCACTTTTCGAATCGGCAAATCTCTCAAAAATTCGAGAATCTTCTCCCGATCATTCTCTAGCACATATTGTCCATTTGGCTTATTAAAATCCGAGCAAATTTTAGCCAACATAAAATTGGCTGCAATTCCAGCCGAGCACGTTAGCCCAGTCTTTTGCTCAACACGAAATCGAATTTCCCGAACGATTTCCTCTCTTCCGATTCCAAATTCCACGTCATCATAGTAGATTTTTCGGGTTTTCGAGCATTTTGGGCATTCGGATTCTTCTGAATCTAAGTATTCTGGAGATTCTGAATCTGGGACACGTGGCAACCAGCATGGACAATCACCACCGTACCGGTGTCGTTTCAGGGTTCCTGAAAAAGGATTTTCAGTTGAAAAT</canonical>
            <polymorphic>GATCCGATGAAGATGGGCGGCCTGGAAGGCCTAGGGCGGTTCTGGAAAATTCGAATTTTTGAAAATTTTCAAAAATTCAATTTTGTTCAGTGGAGGATTTTTAGCTTTTTTTTGTTGAAAATTTTAAAAATGTGAATTTTTGTTCAATGGAGCGCGCTTTTTCTGAATTCTACCTCAAAAAAGATTCCTGAGTCAGTTGTGAGAAGCATAATGGGAAGAGCGACGCCTTCTGAAGCATATCGCCAACGGTTCGGATGTCCATGGATTGGAGATGAGCTTCAGAGACCCGTCCGATGCCACCGACCTGGAAAAGGATAGGGAAAATGGGCGGGAAATTTGAAAATTTGATTTTTTTGAAATTCCGGGAATTTTCAATTTTCGACATTTTCCAGAATTATAAGTTGTTCAATTTTAAGCGTTTCCAGAGTTTTCAAAAATTTCGGATTGTTAAAATTTCTAGAATTTTCGATTTTGGAAGCTTTTGGAAATTCCAGAATTTYCGAGATTTTCAGAATTTCGAATTTATCGATTTTTAAGAATTTTTTGAATTTTCAAAAAAACATTTTGAAATTTTTTCGAAAATTTCAGCTTTTTCCCTATAATTCTCCTCAATTTTCTCACTTTTCGAATCGGCAAATCTCTCAAAAATTCGAGAATCTTCTCCCGATCATTCTCTAGCACATATTGTCCATTTGGCTTATTAAAATCCGAGCAAATTTTAGCCAACATAAAATTGGCTGCAATTCCAGCCGAGCACGTTAGCCCAGTCTTTTGCTCAACACGAAATCGAATTTCCCGAACGATTTCCTCTCTTCCGATTCCAAATTCCACGTCATCATAGTAGATTTTTCGGGTTTTCGAGCATTTTGGGCATTCGGATTCTTCTGAATCTAAGTATTCTGGAGATTCTGAATCTGGGACACGTGGCAACCAGCATGGACAATCACCACCGTACCGGTGTCGTTTCAGGGTTCCTGAAAAAGGATTTTCAGTTGAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>198 159 150 107 90 67 61 59 28 24 22 11 10 9 5</canonical_bands>
                <polymorphic_bands>198 159 150 107 90 69 67 61 28 24 22 11 9 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAAAGGATAGGGAAAATG</pcr_primer_p1>
		<pcr_primer_p2>TTTAATAAGCCAAATGGACAATA</pcr_primer_p2>
		<pcr_amplicon_size>399</pcr_amplicon_size>
		<canonical_amplicon>GGAAAAGGATAGGGAAAATGGGCGGGAAATTTGAAAATTTGATTTTTTTGAAATTCCGGGAATTTTCAATTTTCGACATTTTCCAGAATTATAAGTTGTTCAATTTTAAGCGTTTCCAGAGTTTTCAAAAATTTCGGATTGTTAAAATTTCTAGAATTTTCGATTTTGGAAGCTTTTGGAAATTCCAGAATTTCCGAGATTTTCAGAATTTCGAATTTATCGATTTTTAAGAATTTTTTGAATTTTCAAAAAAACATTTTGAAATTTTTTCGAAAATTTCAGCTTTTTCCCTATAATTCTCCTCAATTTTCTCACTTTTCGAATCGGCAAATCTCTCAAAAATTCGAGAATCTTCTCCCGATCATTCTCTAGCACATATTGTCCATTTGGCTTATTAAA</canonical_amplicon>
		<polymorphic_amplicon>GGAAAAGGATAGGGAAAATGGGCGGGAAATTTGAAAATTTGATTTTTTTGAAATTCCGGGAATTTTCAATTTTCGACATTTTCCAGAATTATAAGTTGTTCAATTTTAAGCGTTTCCAGAGTTTTCAAAAATTTCGGATTGTTAAAATTTCTAGAATTTTCGATTTTGGAAGCTTTTGGAAATTCCAGAATTTYCGAGATTTTCAGAATTTCGAATTTATCGATTTTTAAGAATTTTTTGAATTTTCAAAAAAACATTTTGAAATTTTTTCGAAAATTTCAGCTTTTTCCCTATAATTCTCCTCAATTTTCTCACTTTTCGAATCGGCAAATCTCTCAAAAATTCGAGAATCTTCTCCCGATCATTCTCTAGCACATATTGTCCATTTGGCTTATTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39671</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>22707</contig_pos>
        <strand></strand>
        <context>tycgagattt[T/C]cagaatttcg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AGAATTTTCGATTTTGGAAGCTTTTGGAAATTCCAGAATTTCCGAGATTT</left_flank>
        <right_flank>CAGAATTTCGAATTTATCGATTTTTAAGAATTTTTTGAATTTTCAAAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGATGGGCGGCCTGGAAGGCCTAGGGCGGTTCTGGAAAATTCGAATTTTTGAAAATTTTCAAAAATTCAATTTTGTTCAGTGGAGGATTTTTAGCTTTTTTTTGTTGAAAATTTTAAAAATGTGAATTTTTGTTCAATGGAGCGCGCTTTTTCTGAATTCTACCTCAAAAAAGATTCCTGAGTCAGTTGTGAGAAGCATAATGGGAAGAGCGACGCCTTCTGAAGCATATCGCCAACGGTTCGGATGTCCATGGATTGGAGATGAGCTTCAGAGACCCGTCCGATGCCACCGACCTGGAAAAGGATAGGGAAAATGGGCGGGAAATTTGAAAATTTGATTTTTTTGAAATTCCGGGAATTTTCAATTTTCGACATTTTCCAGAATTATAAGTTGTTCAATTTTAAGCGTTTCCAGAGTTTTCAAAAATTTCGGATTGTTAAAATTTCTAGAATTTTCGATTTTGGAAGCTTTTGGAAATTCCAGAATTTCCGAGATTTTCAGAATTTCGAATTTATCGATTTTTAAGAATTTTTTGAATTTTCAAAAAAACATTTTGAAATTTTTTCGAAAATTTCAGCTTTTTCCCTATAATTCTCCTCAATTTTCTCACTTTTCGAATCGGCAAATCTCTCAAAAATTCGAGAATCTTCTCCCGATCATTCTCTAGCACATATTGTCCATTTGGCTTATTAAAATCCGAGCAAATTTTAGCCAACATAAAATTGGCTGCAATTCCAGCCGAGCACGTTAGCCCAGTCTTTTGCTCAACACGAAATCGAATTTCCCGAACGATTTCCTCTCTTCCGATTCCAAATTCCACGTCATCATAGTAGATTTTTCGGGTTTTCGAGCATTTTGGGCATTCGGATTCTTCTGAATCTAAGTATTCTGGAGATTCTGAATCTGGGACACGTGGCAACCAGCATGGACAATCACCACCGTACCGGTGTCGTTTCAGGGTTCCTGAAAAAGGATTTTCAGTTGAAAATTGAGATTTT</canonical>
            <polymorphic>AAGATGGGCGGCCTGGAAGGCCTAGGGCGGTTCTGGAAAATTCGAATTTTTGAAAATTTTCAAAAATTCAATTTTGTTCAGTGGAGGATTTTTAGCTTTTTTTTGTTGAAAATTTTAAAAATGTGAATTTTTGTTCAATGGAGCGCGCTTTTTCTGAATTCTACCTCAAAAAAGATTCCTGAGTCAGTTGTGAGAAGCATAATGGGAAGAGCGACGCCTTCTGAAGCATATCGCCAACGGTTCGGATGTCCATGGATTGGAGATGAGCTTCAGAGACCCGTCCGATGCCACCGACCTGGAAAAGGATAGGGAAAATGGGCGGGAAATTTGAAAATTTGATTTTTTTGAAATTCCGGGAATTTTCAATTTTCGACATTTTCCAGAATTATAAGTTGTTCAATTTTAAGCGTTTCCAGAGTTTTCAAAAATTTCGGATTGTTAAAATTTCTAGAATTTTCGATTTTGGAAGCTTTTGGAAATTCCAGAATTTCCGAGATTTYCAGAATTTCGAATTTATCGATTTTTAAGAATTTTTTGAATTTTCAAAAAAACATTTTGAAATTTTTTCGAAAATTTCAGCTTTTTCCCTATAATTCTCCTCAATTTTCTCACTTTTCGAATCGGCAAATCTCTCAAAAATTCGAGAATCTTCTCCCGATCATTCTCTAGCACATATTGTCCATTTGGCTTATTAAAATCCGAGCAAATTTTAGCCAACATAAAATTGGCTGCAATTCCAGCCGAGCACGTTAGCCCAGTCTTTTGCTCAACACGAAATCGAATTTCCCGAACGATTTCCTCTCTTCCGATTCCAAATTCCACGTCATCATAGTAGATTTTTCGGGTTTTCGAGCATTTTGGGCATTCGGATTCTTCTGAATCTAAGTATTCTGGAGATTCTGAATCTGGGACACGTGGCAACCAGCATGGACAATCACCACCGTACCGGTGTCGTTTCAGGGTTCCTGAAAAAGGATTTTCAGTTGAAAATTGAGATTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>198 155 150 107 99 67 61 59 28 24 22 11 10 9</canonical_bands>
                <polymorphic_bands>208 155 150 107 99 67 61 59 28 24 22 11 9</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGAAAAGGATAGGGAAAATG</pcr_primer_p1>
		<pcr_primer_p2>TTTAATAAGCCAAATGGACAATA</pcr_primer_p2>
		<pcr_amplicon_size>399</pcr_amplicon_size>
		<canonical_amplicon>GGAAAAGGATAGGGAAAATGGGCGGGAAATTTGAAAATTTGATTTTTTTGAAATTCCGGGAATTTTCAATTTTCGACATTTTCCAGAATTATAAGTTGTTCAATTTTAAGCGTTTCCAGAGTTTTCAAAAATTTCGGATTGTTAAAATTTCTAGAATTTTCGATTTTGGAAGCTTTTGGAAATTCCAGAATTTCCGAGATTTTCAGAATTTCGAATTTATCGATTTTTAAGAATTTTTTGAATTTTCAAAAAAACATTTTGAAATTTTTTCGAAAATTTCAGCTTTTTCCCTATAATTCTCCTCAATTTTCTCACTTTTCGAATCGGCAAATCTCTCAAAAATTCGAGAATCTTCTCCCGATCATTCTCTAGCACATATTGTCCATTTGGCTTATTAAA</canonical_amplicon>
		<polymorphic_amplicon>GGAAAAGGATAGGGAAAATGGGCGGGAAATTTGAAAATTTGATTTTTTTGAAATTCCGGGAATTTTCAATTTTCGACATTTTCCAGAATTATAAGTTGTTCAATTTTAAGCGTTTCCAGAGTTTTCAAAAATTTCGGATTGTTAAAATTTCTAGAATTTTCGATTTTGGAAGCTTTTGGAAATTCCAGAATTTCCGAGATTTYCAGAATTTCGAATTTATCGATTTTTAAGAATTTTTTGAATTTTCAAAAAAACATTTTGAAATTTTTTCGAAAATTTCAGCTTTTTCCCTATAATTCTCCTCAATTTTCTCACTTTTCGAATCGGCAAATCTCTCAAAAATTCGAGAATCTTCTCCCGATCATTCTCTAGCACATATTGTCCATTTGGCTTATTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39672</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>29538</contig_pos>
        <strand></strand>
        <context>TTGAAAATTC[T/C]CAAATAATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ACTGTGAGCTGCTCCGAATCAAATTTCTGTTTGGAATTTTTTGAAAATTC</left_flank>
        <right_flank>CAAATAATTCCATAAATTCGATGGAACAGCTCACCTGGATGTGAAAAGAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAGCCCACCTTATACATCGAATTTGAGCTCAATTGTCTTGTTTCTTGCGAGAGATATTAAAATTTTGTCAACTNNNNNNNNNNGCCCACGTTTTATTGAATAAACAGTAGGACTCTTGAAAATGTCACCTATCTTTCCAGGGAGTGATTTTTTCAAAAAAGTTGTAAACTGCAAAAATGAAGCTCTATTTTTGTTTTATACTTTCTGAAATTTTCAGTACAATTTGACTATTTTGACCTATTTTTTGAAGCTTTTAAACTTTGCTATTCATTTATGGCTACTTTATGACCGAGACCGAAAGATTTACGACTTTATGACCGAGACCGAAAGACCGAATTAATACAAAAATAATTTTATTATAGTTTAAAAAATAAAAAAGAGAATTCTAGAACAATTGATTCATTAAGAAAATTGGAATGTCAGTGATGGAATTGAAAAGATATGAAATCACTGTGAGCTGCTCCGAATCAAATTTCTGTTTGGAATTTTTTGAAAATTCTCAAATAATTCCATAAATTCGATGGAACAGCTCACCTGGATGTGAAAAGAAGATGGTGGTGACATTTTGTTCTTGGCGGGAATTTGAATTTTTGAAAATTGGAAAAAAAATTAATAAAGATAACATTTTGGAAAAATATTGGGAAAGAATTTGGAAAGAAAATTGTTCGATAATAATTTTTTACAGATGATCTTTGCCCGTTTTTTAAAGAAAAAATAATTAGAAAAAGTTGGGATTATGGATATTTCAAAGTGGGCGGGGTTTTAAAAGGGGGCGGAGCCTAAAGAATATTGATGAAGAATTACAAGATTGGGGAAGTTAGAAAATTCTAAAAGCAGGGAACATTTTTTGGTGGGAATCTCAATTTTTGAAATTCCAAAAATTGACGAAAATTCAAAATTTTCAGAAATTTCAAATTATTGGGAAAGTTTTCAGAATTTCAAAATCGGAGGTTTTGCGCCAAACAAATAAAAATTCCATTCAAAAACTCGAATCCTCTAA</canonical>
            <polymorphic>AAGCCCACCTTATACATCGAATTTGAGCTCAATTGTCTTGTTTCTTGCGAGAGATATTAAAATTTTGTCAACTNNNNNNNNNNGCCCACGTTTTATTGAATAAACAGTAGGACTCTTGAAAATGTCACCTATCTTTCCAGGGAGTGATTTTTTCAAAAAAGTTGTAAACTGCAAAAATGAAGCTCTATTTTTGTTTTATACTTTCTGAAATTTTCAGTACAATTTGACTATTTTGACCTATTTTTTGAAGCTTTTAAACTTTGCTATTCATTTATGGCTACTTTATGACCGAGACCGAAAGATTTACGACTTTATGACCGAGACCGAAAGACCGAATTAATACAAAAATAATTTTATTATAGTTTAAAAAATAAAAAAGAGAATTCTAGAACAATTGATTCATTAAGAAAATTGGAATGTCAGTGATGGAATTGAAAAGATATGAAATCACTGTGAGCTGCTCCGAATCAAATTTCTGTTTGGAATTTTTTGAAAATTCYCAAATAATTCCATAAATTCGATGGAACAGCTCACCTGGATGTGAAAAGAAGATGGTGGTGACATTTTGTTCTTGGCGGGAATTTGAATTTTTGAAAATTGGAAAAAAAATTAATAAAGATAACATTTTGGAAAAATATTGGGAAAGAATTTGGAAAGAAAATTGTTCGATAATAATTTTTTACAGATGATCTTTGCCCGTTTTTTAAAGAAAAAATAATTAGAAAAAGTTGGGATTATGGATATTTCAAAGTGGGCGGGGTTTTAAAAGGGGGCGGAGCCTAAAGAATATTGATGAAGAATTACAAGATTGGGGAAGTTAGAAAATTCTAAAAGCAGGGAACATTTTTTGGTGGGAATCTCAATTTTTGAAATTCCAAAAATTGACGAAAATTCAAAATTTTCAGAAATTTCAAATTATTGGGAAAGTTTTCAGAATTTCAAAATCGGAGGTTTTGCGCCAAACAAATAAAAATTCCATTCAAAAACTCGAATCCTCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTAAGAAAATTGGAATGTCAG</pcr_primer_p1>
		<pcr_primer_p2>CAAATTCTTTCCCAATATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CATTAAGAAAATTGGAATGTCAGTGATGGAATTGAAAAGATATGAAATCACTGTGAGCTGCTCCGAATCAAATTTCTGTTTGGAATTTTTTGAAAATTCTCAAATAATTCCATAAATTCGATGGAACAGCTCACCTGGATGTGAAAAGAAGATGGTGGTGACATTTTGTTCTTGGCGGGAATTTGAATTTTTGAAAATTGGAAAAAAAATTAATAAAGATAACATTTTGGAAAAATATTGGGAAAGAATTTG</canonical_amplicon>
		<polymorphic_amplicon>CATTAAGAAAATTGGAATGTCAGTGATGGAATTGAAAAGATATGAAATCACTGTGAGCTGCTCCGAATCAAATTTCTGTTTGGAATTTTTTGAAAATTCYCAAATAATTCCATAAATTCGATGGAACAGCTCACCTGGATGTGAAAAGAAGATGGTGGTGACATTTTGTTCTTGGCGGGAATTTGAATTTTTGAAAATTGGAAAAAAAATTAATAAAGATAACATTTTGGAAAAATATTGGGAAAGAATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39673</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>29551</contig_pos>
        <strand></strand>
        <context>AATAATTCCA[T/C]AAATTCGATG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>CCGAATCAAATTTCTGTTTGGAATTTTTTGAAAATTCTCAAATAATTCCA</left_flank>
        <right_flank>AAATTCGATGGAACAGCTCACCTGGATGTGAAAAGAAGATGGTGGTGACA</right_flank>
        <qual_score>39</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACATCGAATTTGAGCTCAATTGTCTTGTTTCTTGCGAGAGATATTAAAATTTTGTCAACTNNNNNNNNNNGCCCACGTTTTATTGAATAAACAGTAGGACTCTTGAAAATGTCACCTATCTTTCCAGGGAGTGATTTTTTCAAAAAAGTTGTAAACTGCAAAAATGAAGCTCTATTTTTGTTTTATACTTTCTGAAATTTTCAGTACAATTTGACTATTTTGACCTATTTTTTGAAGCTTTTAAACTTTGCTATTCATTTATGGCTACTTTATGACCGAGACCGAAAGATTTACGACTTTATGACCGAGACCGAAAGACCGAATTAATACAAAAATAATTTTATTATAGTTTAAAAAATAAAAAAGAGAATTCTAGAACAATTGATTCATTAAGAAAATTGGAATGTCAGTGATGGAATTGAAAAGATATGAAATCACTGTGAGCTGCTCCGAATCAAATTTCTGTTTGGAATTTTTTGAAAATTCTCAAATAATTCCATAAATTCGATGGAACAGCTCACCTGGATGTGAAAAGAAGATGGTGGTGACATTTTGTTCTTGGCGGGAATTTGAATTTTTGAAAATTGGAAAAAAAATTAATAAAGATAACATTTTGGAAAAATATTGGGAAAGAATTTGGAAAGAAAATTGTTCGATAATAATTTTTTACAGATGATCTTTGCCCGTTTTTTAAAGAAAAAATAATTAGAAAAAGTTGGGATTATGGATATTTCAAAGTGGGCGGGGTTTTAAAAGGGGGCGGAGCCTAAAGAATATTGATGAAGAATTACAAGATTGGGGAAGTTAGAAAATTCTAAAAGCAGGGAACATTTTTTGGTGGGAATCTCAATTTTTGAAATTCCAAAAATTGACGAAAATTCAAAATTTTCAGAAATTTCAAATTATTGGGAAAGTTTTCAGAATTTCAAAATCGGAGGTTTTGCGCCAAACAAATAAAAATTCCATTCAAAAACTCGAATCCTCTAATTTTCCAAATATC</canonical>
            <polymorphic>ACATCGAATTTGAGCTCAATTGTCTTGTTTCTTGCGAGAGATATTAAAATTTTGTCAACTNNNNNNNNNNGCCCACGTTTTATTGAATAAACAGTAGGACTCTTGAAAATGTCACCTATCTTTCCAGGGAGTGATTTTTTCAAAAAAGTTGTAAACTGCAAAAATGAAGCTCTATTTTTGTTTTATACTTTCTGAAATTTTCAGTACAATTTGACTATTTTGACCTATTTTTTGAAGCTTTTAAACTTTGCTATTCATTTATGGCTACTTTATGACCGAGACCGAAAGATTTACGACTTTATGACCGAGACCGAAAGACCGAATTAATACAAAAATAATTTTATTATAGTTTAAAAAATAAAAAAGAGAATTCTAGAACAATTGATTCATTAAGAAAATTGGAATGTCAGTGATGGAATTGAAAAGATATGAAATCACTGTGAGCTGCTCCGAATCAAATTTCTGTTTGGAATTTTTTGAAAATTCTCAAATAATTCCAYAAATTCGATGGAACAGCTCACCTGGATGTGAAAAGAAGATGGTGGTGACATTTTGTTCTTGGCGGGAATTTGAATTTTTGAAAATTGGAAAAAAAATTAATAAAGATAACATTTTGGAAAAATATTGGGAAAGAATTTGGAAAGAAAATTGTTCGATAATAATTTTTTACAGATGATCTTTGCCCGTTTTTTAAAGAAAAAATAATTAGAAAAAGTTGGGATTATGGATATTTCAAAGTGGGCGGGGTTTTAAAAGGGGGCGGAGCCTAAAGAATATTGATGAAGAATTACAAGATTGGGGAAGTTAGAAAATTCTAAAAGCAGGGAACATTTTTTGGTGGGAATCTCAATTTTTGAAATTCCAAAAATTGACGAAAATTCAAAATTTTCAGAAATTTCAAATTATTGGGAAAGTTTTCAGAATTTCAAAATCGGAGGTTTTGCGCCAAACAAATAAAAATTCCATTCAAAAACTCGAATCCTCTAATTTTCCAAATATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATTAAGAAAATTGGAATGTCAG</pcr_primer_p1>
		<pcr_primer_p2>CAAATTCTTTCCCAATATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CATTAAGAAAATTGGAATGTCAGTGATGGAATTGAAAAGATATGAAATCACTGTGAGCTGCTCCGAATCAAATTTCTGTTTGGAATTTTTTGAAAATTCTCAAATAATTCCATAAATTCGATGGAACAGCTCACCTGGATGTGAAAAGAAGATGGTGGTGACATTTTGTTCTTGGCGGGAATTTGAATTTTTGAAAATTGGAAAAAAAATTAATAAAGATAACATTTTGGAAAAATATTGGGAAAGAATTTG</canonical_amplicon>
		<polymorphic_amplicon>CATTAAGAAAATTGGAATGTCAGTGATGGAATTGAAAAGATATGAAATCACTGTGAGCTGCTCCGAATCAAATTTCTGTTTGGAATTTTTTGAAAATTCTCAAATAATTCCAYAAATTCGATGGAACAGCTCACCTGGATGTGAAAAGAAGATGGTGGTGACATTTTGTTCTTGGCGGGAATTTGAATTTTTGAAAATTGGAAAAAAAATTAATAAAGATAACATTTTGGAAAAATATTGGGAAAGAATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39674</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>29593</contig_pos>
        <strand></strand>
        <context>AAAGAAGATG[G/T]TGGTGACATT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TAATTCCATAAATTCGATGGAACAGCTCACCTGGATGTGAAAAGAAGATG</left_flank>
        <right_flank>TGGTGACATTTTGTTCTTGGCGGGAATTTGAATTTTTGAAAATTGGAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATTAAAATTTTGTCAACTNNNNNNNNNNGCCCACGTTTTATTGAATAAACAGTAGGACTCTTGAAAATGTCACCTATCTTTCCAGGGAGTGATTTTTTCAAAAAAGTTGTAAACTGCAAAAATGAAGCTCTATTTTTGTTTTATACTTTCTGAAATTTTCAGTACAATTTGACTATTTTGACCTATTTTTTGAAGCTTTTAAACTTTGCTATTCATTTATGGCTACTTTATGACCGAGACCGAAAGATTTACGACTTTATGACCGAGACCGAAAGACCGAATTAATACAAAAATAATTTTATTATAGTTTAAAAAATAAAAAAGAGAATTCTAGAACAATTGATTCATTAAGAAAATTGGAATGTCAGTGATGGAATTGAAAAGATATGAAATCACTGTGAGCTGCTCCGAATCAAATTTCTGTTTGGAATTTTTTGAAAATTCTCAAATAATTCCATAAATTCGATGGAACAGCTCACCTGGATGTGAAAAGAAGATGGTGGTGACATTTTGTTCTTGGCGGGAATTTGAATTTTTGAAAATTGGAAAAAAAATTAATAAAGATAACATTTTGGAAAAATATTGGGAAAGAATTTGGAAAGAAAATTGTTCGATAATAATTTTTTACAGATGATCTTTGCCCGTTTTTTAAAGAAAAAATAATTAGAAAAAGTTGGGATTATGGATATTTCAAAGTGGGCGGGGTTTTAAAAGGGGGCGGAGCCTAAAGAATATTGATGAAGAATTACAAGATTGGGGAAGTTAGAAAATTCTAAAAGCAGGGAACATTTTTTGGTGGGAATCTCAATTTTTGAAATTCCAAAAATTGACGAAAATTCAAAATTTTCAGAAATTTCAAATTATTGGGAAAGTTTTCAGAATTTCAAAATCGGAGGTTTTGCGCCAAACAAATAAAAATTCCATTCAAAAACTCGAATCCTCTAATTTTCCAAATATCTTGTAAATCTAATATTTTGAAATACAGTAACCGGAAAAGTTG</canonical>
            <polymorphic>ATTAAAATTTTGTCAACTNNNNNNNNNNGCCCACGTTTTATTGAATAAACAGTAGGACTCTTGAAAATGTCACCTATCTTTCCAGGGAGTGATTTTTTCAAAAAAGTTGTAAACTGCAAAAATGAAGCTCTATTTTTGTTTTATACTTTCTGAAATTTTCAGTACAATTTGACTATTTTGACCTATTTTTTGAAGCTTTTAAACTTTGCTATTCATTTATGGCTACTTTATGACCGAGACCGAAAGATTTACGACTTTATGACCGAGACCGAAAGACCGAATTAATACAAAAATAATTTTATTATAGTTTAAAAAATAAAAAAGAGAATTCTAGAACAATTGATTCATTAAGAAAATTGGAATGTCAGTGATGGAATTGAAAAGATATGAAATCACTGTGAGCTGCTCCGAATCAAATTTCTGTTTGGAATTTTTTGAAAATTCTCAAATAATTCCATAAATTCGATGGAACAGCTCACCTGGATGTGAAAAGAAGATGKTGGTGACATTTTGTTCTTGGCGGGAATTTGAATTTTTGAAAATTGGAAAAAAAATTAATAAAGATAACATTTTGGAAAAATATTGGGAAAGAATTTGGAAAGAAAATTGTTCGATAATAATTTTTTACAGATGATCTTTGCCCGTTTTTTAAAGAAAAAATAATTAGAAAAAGTTGGGATTATGGATATTTCAAAGTGGGCGGGGTTTTAAAAGGGGGCGGAGCCTAAAGAATATTGATGAAGAATTACAAGATTGGGGAAGTTAGAAAATTCTAAAAGCAGGGAACATTTTTTGGTGGGAATCTCAATTTTTGAAATTCCAAAAATTGACGAAAATTCAAAATTTTCAGAAATTTCAAATTATTGGGAAAGTTTTCAGAATTTCAAAATCGGAGGTTTTGCGCCAAACAAATAAAAATTCCATTCAAAAACTCGAATCCTCTAATTTTCCAAATATCTTGTAAATCTAATATTTTGAAATACAGTAACCGGAAAAGTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>279 202 193 100 78 39 33 25 19 14 10 5 3</canonical_bands>
                <polymorphic_bands>279 202 193 100 78 39 33 25 19 17 10 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATTAAGAAAATTGGAATGTCAG</pcr_primer_p1>
		<pcr_primer_p2>CAAATTCTTTCCCAATATTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CATTAAGAAAATTGGAATGTCAGTGATGGAATTGAAAAGATATGAAATCACTGTGAGCTGCTCCGAATCAAATTTCTGTTTGGAATTTTTTGAAAATTCTCAAATAATTCCATAAATTCGATGGAACAGCTCACCTGGATGTGAAAAGAAGATGGTGGTGACATTTTGTTCTTGGCGGGAATTTGAATTTTTGAAAATTGGAAAAAAAATTAATAAAGATAACATTTTGGAAAAATATTGGGAAAGAATTTG</canonical_amplicon>
		<polymorphic_amplicon>CATTAAGAAAATTGGAATGTCAGTGATGGAATTGAAAAGATATGAAATCACTGTGAGCTGCTCCGAATCAAATTTCTGTTTGGAATTTTTTGAAAATTCTCAAATAATTCCATAAATTCGATGGAACAGCTCACCTGGATGTGAAAAGAAGATGKTGGTGACATTTTGTTCTTGGCGGGAATTTGAATTTTTGAAAATTGGAAAAAAAATTAATAAAGATAACATTTTGGAAAAATATTGGGAAAGAATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39675</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>29661</contig_pos>
        <strand></strand>
        <context>ATAAAGATAA[C/A]ATTTTGGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TGGCGGGAATTTGAATTTTTGAAAATTGGAAAAAAAATTAATAAAGATAA</left_flank>
        <right_flank>ATTTTGGAAAAATATTGGGAAAGAATTTGGAAAGAAAATTGTTCGATAAT</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCACCTATCTTTCCAGGGAGTGATTTTTTCAAAAAAGTTGTAAACTGCAAAAATGAAGCTCTATTTTTGTTTTATACTTTCTGAAATTTTCAGTACAATTTGACTATTTTGACCTATTTTTTGAAGCTTTTAAACTTTGCTATTCATTTATGGCTACTTTATGACCGAGACCGAAAGATTTACGACTTTATGACCGAGACCGAAAGACCGAATTAATACAAAAATAATTTTATTATAGTTTAAAAAATAAAAAAGAGAATTCTAGAACAATTGATTCATTAAGAAAATTGGAATGTCAGTGATGGAATTGAAAAGATATGAAATCACTGTGAGCTGCTCCGAATCAAATTTCTGTTTGGAATTTTTTGAAAATTCTCAAATAATTCCATAAATTCGATGGAACAGCTCACCTGGATGTGAAAAGAAGATGGTGGTGACATTTTGTTCTTGGCGGGAATTTGAATTTTTGAAAATTGGAAAAAAAATTAATAAAGATAACATTTTGGAAAAATATTGGGAAAGAATTTGGAAAGAAAATTGTTCGATAATAATTTTTTACAGATGATCTTTGCCCGTTTTTTAAAGAAAAAATAATTAGAAAAAGTTGGGATTATGGATATTTCAAAGTGGGCGGGGTTTTAAAAGGGGGCGGAGCCTAAAGAATATTGATGAAGAATTACAAGATTGGGGAAGTTAGAAAATTCTAAAAGCAGGGAACATTTTTTGGTGGGAATCTCAATTTTTGAAATTCCAAAAATTGACGAAAATTCAAAATTTTCAGAAATTTCAAATTATTGGGAAAGTTTTCAGAATTTCAAAATCGGAGGTTTTGCGCCAAACAAATAAAAATTCCATTCAAAAACTCGAATCCTCTAATTTTCCAAATATCTTGTAAATCTAATATTTTGAAATACAGTAACCGGAAAAGTTGATATTTCATCATTTTCAATGAGAAATAACAAAGTTTAGGGATCTCAAAAAGTAGGGCAAAATTGTTGG</canonical>
            <polymorphic>GTCACCTATCTTTCCAGGGAGTGATTTTTTCAAAAAAGTTGTAAACTGCAAAAATGAAGCTCTATTTTTGTTTTATACTTTCTGAAATTTTCAGTACAATTTGACTATTTTGACCTATTTTTTGAAGCTTTTAAACTTTGCTATTCATTTATGGCTACTTTATGACCGAGACCGAAAGATTTACGACTTTATGACCGAGACCGAAAGACCGAATTAATACAAAAATAATTTTATTATAGTTTAAAAAATAAAAAAGAGAATTCTAGAACAATTGATTCATTAAGAAAATTGGAATGTCAGTGATGGAATTGAAAAGATATGAAATCACTGTGAGCTGCTCCGAATCAAATTTCTGTTTGGAATTTTTTGAAAATTCTCAAATAATTCCATAAATTCGATGGAACAGCTCACCTGGATGTGAAAAGAAGATGGTGGTGACATTTTGTTCTTGGCGGGAATTTGAATTTTTGAAAATTGGAAAAAAAATTAATAAAGATAAMATTTTGGAAAAATATTGGGAAAGAATTTGGAAAGAAAATTGTTCGATAATAATTTTTTACAGATGATCTTTGCCCGTTTTTTAAAGAAAAAATAATTAGAAAAAGTTGGGATTATGGATATTTCAAAGTGGGCGGGGTTTTAAAAGGGGGCGGAGCCTAAAGAATATTGATGAAGAATTACAAGATTGGGGAAGTTAGAAAATTCTAAAAGCAGGGAACATTTTTTGGTGGGAATCTCAATTTTTGAAATTCCAAAAATTGACGAAAATTCAAAATTTTCAGAAATTTCAAATTATTGGGAAAGTTTTCAGAATTTCAAAATCGGAGGTTTTGCGCCAAACAAATAAAAATTCCATTCAAAAACTCGAATCCTCTAATTTTCCAAATATCTTGTAAATCTAATATTTTGAAATACAGTAACCGGAAAAGTTGATATTTCATCATTTTCAATGAGAAATAACAAAGTTTAGGGATCTCAAAAAGTAGGGCAAAATTGTTGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAAATTTCTGTTTGGAATTTTT</pcr_primer_p1>
		<pcr_primer_p2>GGGCAAAGATCATCTGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>230</pcr_amplicon_size>
		<canonical_amplicon>CAAATTTCTGTTTGGAATTTTTTGAAAATTCTCAAATAATTCCATAAATTCGATGGAACAGCTCACCTGGATGTGAAAAGAAGATGGTGGTGACATTTTGTTCTTGGCGGGAATTTGAATTTTTGAAAATTGGAAAAAAAATTAATAAAGATAACATTTTGGAAAAATATTGGGAAAGAATTTGGAAAGAAAATTGTTCGATAATAATTTTTTACAGATGATCTTTGCCC</canonical_amplicon>
		<polymorphic_amplicon>CAAATTTCTGTTTGGAATTTTTTGAAAATTCTCAAATAATTCCATAAATTCGATGGAACAGCTCACCTGGATGTGAAAAGAAGATGGTGGTGACATTTTGTTCTTGGCGGGAATTTGAATTTTTGAAAATTGGAAAAAAAATTAATAAAGATAAMATTTTGGAAAAATATTGGGAAAGAATTTGGAAAGAAAATTGTTCGATAATAATTTTTTACAGATGATCTTTGCCC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39676</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>29882</contig_pos>
        <strand></strand>
        <context>GCAGGGAACA[T/A]TTTTTGGTGG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TGAAGAATTACAAGATTGGGGAAGTTAGAAAATTCTAAAAGCAGGGAACA</left_flank>
        <right_flank>TTTTTGGTGGGAATCTCAATTTTTGAAATTCCAAAAATTGACGAAAATTC</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATAATTTTATTATAGTTTAAAAAATAAAAAAGAGAATTCTAGAACAATTGATTCATTAAGAAAATTGGAATGTCAGTGATGGAATTGAAAAGATATGAAATCACTGTGAGCTGCTCCGAATCAAATTTCTGTTTGGAATTTTTTGAAAATTCTCAAATAATTCCATAAATTCGATGGAACAGCTCACCTGGATGTGAAAAGAAGATGGTGGTGACATTTTGTTCTTGGCGGGAATTTGAATTTTTGAAAATTGGAAAAAAAATTAATAAAGATAACATTTTGGAAAAATATTGGGAAAGAATTTGGAAAGAAAATTGTTCGATAATAATTTTTTACAGATGATCTTTGCCCGTTTTTTAAAGAAAAAATAATTAGAAAAAGTTGGGATTATGGATATTTCAAAGTGGGCGGGGTTTTAAAAGGGGGCGGAGCCTAAAGAATATTGATGAAGAATTACAAGATTGGGGAAGTTAGAAAATTCTAAAAGCAGGGAACATTTTTTGGTGGGAATCTCAATTTTTGAAATTCCAAAAATTGACGAAAATTCAAAATTTTCAGAAATTTCAAATTATTGGGAAAGTTTTCAGAATTTCAAAATCGGAGGTTTTGCGCCAAACAAATAAAAATTCCATTCAAAAACTCGAATCCTCTAATTTTCCAAATATCTTGTAAATCTAATATTTTGAAATACAGTAACCGGAAAAGTTGATATTTCATCATTTTCAATGAGAAATAACAAAGTTTAGGGATCTCAAAAAGTAGGGCAAAATTGTTGGATTGTTCTGATAATTTCAGAAAACGTAGAACGAAAATAGAACTATATTTTCATAGTTGACAACTTTTTTGTAACGCTGATGTCTGAAGAGATACATACTCTTGAAAGGACATTTATTCTTTCTTGAAATTCTTTTCTTGAAAATATAGGACCCTTGAAAAGTGTCCTCTATCTTTTCAGGGAGTGATTTTTCAAAAAAGTTGTCAACTACAACAATGAAGC</canonical>
            <polymorphic>AAAATAATTTTATTATAGTTTAAAAAATAAAAAAGAGAATTCTAGAACAATTGATTCATTAAGAAAATTGGAATGTCAGTGATGGAATTGAAAAGATATGAAATCACTGTGAGCTGCTCCGAATCAAATTTCTGTTTGGAATTTTTTGAAAATTCTCAAATAATTCCATAAATTCGATGGAACAGCTCACCTGGATGTGAAAAGAAGATGGTGGTGACATTTTGTTCTTGGCGGGAATTTGAATTTTTGAAAATTGGAAAAAAAATTAATAAAGATAACATTTTGGAAAAATATTGGGAAAGAATTTGGAAAGAAAATTGTTCGATAATAATTTTTTACAGATGATCTTTGCCCGTTTTTTAAAGAAAAAATAATTAGAAAAAGTTGGGATTATGGATATTTCAAAGTGGGCGGGGTTTTAAAAGGGGGCGGAGCCTAAAGAATATTGATGAAGAATTACAAGATTGGGGAAGTTAGAAAATTCTAAAAGCAGGGAACAWTTTTTGGTGGGAATCTCAATTTTTGAAATTCCAAAAATTGACGAAAATTCAAAATTTTCAGAAATTTCAAATTATTGGGAAAGTTTTCAGAATTTCAAAATCGGAGGTTTTGCGCCAAACAAATAAAAATTCCATTCAAAAACTCGAATCCTCTAATTTTCCAAATATCTTGTAAATCTAATATTTTGAAATACAGTAACCGGAAAAGTTGATATTTCATCATTTTCAATGAGAAATAACAAAGTTTAGGGATCTCAAAAAGTAGGGCAAAATTGTTGGATTGTTCTGATAATTTCAGAAAACGTAGAACGAAAATAGAACTATATTTTCATAGTTGACAACTTTTTTGTAACGCTGATGTCTGAAGAGATACATACTCTTGAAAGGACATTTATTCTTTCTTGAAATTCTTTTCTTGAAAATATAGGACCCTTGAAAAGTGTCCTCTATCTTTTCAGGGAGTGATTTTTCAAAAAAGTTGTCAACTACAACAATGAAGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGGGATTATGGATATTTCAAAG</pcr_primer_p1>
		<pcr_primer_p2>TGAATGGAATTTTTATTTGTTTG</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>TGGGATTATGGATATTTCAAAGTGGGCGGGGTTTTAAAAGGGGGCGGAGCCTAAAGAATATTGATGAAGAATTACAAGATTGGGGAAGTTAGAAAATTCTAAAAGCAGGGAACATTTTTTGGTGGGAATCTCAATTTTTGAAATTCCAAAAATTGACGAAAATTCAAAATTTTCAGAAATTTCAAATTATTGGGAAAGTTTTCAGAATTTCAAAATCGGAGGTTTTGCGCCAAACAAATAAAAATTCCATTCA</canonical_amplicon>
		<polymorphic_amplicon>TGGGATTATGGATATTTCAAAGTGGGCGGGGTTTTAAAAGGGGGCGGAGCCTAAAGAATATTGATGAAGAATTACAAGATTGGGGAAGTTAGAAAATTCTAAAAGCAGGGAACAWTTTTTGGTGGGAATCTCAATTTTTGAAATTCCAAAAATTGACGAAAATTCAAAATTTTCAGAAATTTCAAATTATTGGGAAAGTTTTCAGAATTTCAAAATCGGAGGTTTTGCGCCAAACAAATAAAAATTCCATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39677</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>29954</contig_pos>
        <strand></strand>
        <context>AAATTTCAAA[T/C]TWTTGGGAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TTTGAAATTCCAAAAATTGACGAAAATTCAAAATTTTCAGAAATTTCAAA</left_flank>
        <right_flank>TATTGGGAAAGTTTTCAGAATTTCAAAATCGGAGGTTTTGCGCCAAACAA</right_flank>
        <qual_score>38</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTCAGTGATGGAATTGAAAAGATATGAAATCACTGTGAGCTGCTCCGAATCAAATTTCTGTTTGGAATTTTTTGAAAATTCTCAAATAATTCCATAAATTCGATGGAACAGCTCACCTGGATGTGAAAAGAAGATGGTGGTGACATTTTGTTCTTGGCGGGAATTTGAATTTTTGAAAATTGGAAAAAAAATTAATAAAGATAACATTTTGGAAAAATATTGGGAAAGAATTTGGAAAGAAAATTGTTCGATAATAATTTTTTACAGATGATCTTTGCCCGTTTTTTAAAGAAAAAATAATTAGAAAAAGTTGGGATTATGGATATTTCAAAGTGGGCGGGGTTTTAAAAGGGGGCGGAGCCTAAAGAATATTGATGAAGAATTACAAGATTGGGGAAGTTAGAAAATTCTAAAAGCAGGGAACATTTTTTGGTGGGAATCTCAATTTTTGAAATTCCAAAAATTGACGAAAATTCAAAATTTTCAGAAATTTCAAATTATTGGGAAAGTTTTCAGAATTTCAAAATCGGAGGTTTTGCGCCAAACAAATAAAAATTCCATTCAAAAACTCGAATCCTCTAATTTTCCAAATATCTTGTAAATCTAATATTTTGAAATACAGTAACCGGAAAAGTTGATATTTCATCATTTTCAATGAGAAATAACAAAGTTTAGGGATCTCAAAAAGTAGGGCAAAATTGTTGGATTGTTCTGATAATTTCAGAAAACGTAGAACGAAAATAGAACTATATTTTCATAGTTGACAACTTTTTTGTAACGCTGATGTCTGAAGAGATACATACTCTTGAAAGGACATTTATTCTTTCTTGAAATTCTTTTCTTGAAAATATAGGACCCTTGAAAAGTGTCCTCTATCTTTTCAGGGAGTGATTTTTCAAAAAAGTTGTCAACTACAACAATGAAGCTCTATTTTTGTTTTATATCTTCTGAAATTTTTCAGAACAATCCAACAATTTTGACCTAATTTTTGAGAGCTC</canonical>
            <polymorphic>ATGTCAGTGATGGAATTGAAAAGATATGAAATCACTGTGAGCTGCTCCGAATCAAATTTCTGTTTGGAATTTTTTGAAAATTCTCAAATAATTCCATAAATTCGATGGAACAGCTCACCTGGATGTGAAAAGAAGATGGTGGTGACATTTTGTTCTTGGCGGGAATTTGAATTTTTGAAAATTGGAAAAAAAATTAATAAAGATAACATTTTGGAAAAATATTGGGAAAGAATTTGGAAAGAAAATTGTTCGATAATAATTTTTTACAGATGATCTTTGCCCGTTTTTTAAAGAAAAAATAATTAGAAAAAGTTGGGATTATGGATATTTCAAAGTGGGCGGGGTTTTAAAAGGGGGCGGAGCCTAAAGAATATTGATGAAGAATTACAAGATTGGGGAAGTTAGAAAATTCTAAAAGCAGGGAACATTTTTTGGTGGGAATCTCAATTTTTGAAATTCCAAAAATTGACGAAAATTCAAAATTTTCAGAAATTTCAAAYTATTGGGAAAGTTTTCAGAATTTCAAAATCGGAGGTTTTGCGCCAAACAAATAAAAATTCCATTCAAAAACTCGAATCCTCTAATTTTCCAAATATCTTGTAAATCTAATATTTTGAAATACAGTAACCGGAAAAGTTGATATTTCATCATTTTCAATGAGAAATAACAAAGTTTAGGGATCTCAAAAAGTAGGGCAAAATTGTTGGATTGTTCTGATAATTTCAGAAAACGTAGAACGAAAATAGAACTATATTTTCATAGTTGACAACTTTTTTGTAACGCTGATGTCTGAAGAGATACATACTCTTGAAAGGACATTTATTCTTTCTTGAAATTCTTTTCTTGAAAATATAGGACCCTTGAAAAGTGTCCTCTATCTTTTCAGGGAGTGATTTTTCAAAAAAGTTGTCAACTACAACAATGAAGCTCTATTTTTGTTTTATATCTTCTGAAATTTTTCAGAACAATCCAACAATTTTGACCTAATTTTTGAGAGCTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>120 116 115 82 65 43 41 39 38 37 27 25 21 21 20 15 14 13 13 13 12 11 11 11 10 10 10 9 9 9 7 7 6</canonical_bands>
                <polymorphic_bands>120 116 115 82 65 43 41 39 38 37 28 27 25 21 20 15 14 13 13 13 12 11 11 11 10 10 10 9 9 9 7 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAGATTGGGGAAGTTAGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AACTTTTCCGGTTACTGTATTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGATTGGGGAAGTTAGAAAATTCTAAAAGCAGGGAACATTTTTTGGTGGGAATCTCAATTTTTGAAATTCCAAAAATTGACGAAAATTCAAAATTTTCAGAAATTTCAAATTATTGGGAAAGTTTTCAGAATTTCAAAATCGGAGGTTTTGCGCCAAACAAATAAAAATTCCATTCAAAAACTCGAATCCTCTAATTTTCCAAATATCTTGTAAATCTAATATTTTGAAATACAGTAACCGGAAAAGTT</canonical_amplicon>
		<polymorphic_amplicon>AAGATTGGGGAAGTTAGAAAATTCTAAAAGCAGGGAACATTTTTTGGTGGGAATCTCAATTTTTGAAATTCCAAAAATTGACGAAAATTCAAAATTTTCAGAAATTTCAAAYTATTGGGAAAGTTTTCAGAATTTCAAAATCGGAGGTTTTGCGCCAAACAAATAAAAATTCCATTCAAAAACTCGAATCCTCTAATTTTCCAAATATCTTGTAAATCTAATATTTTGAAATACAGTAACCGGAAAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39678</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>29956</contig_pos>
        <strand></strand>
        <context>ATTTCAAAYT[A/T]TTGGGAAAGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TGAAATTCCAAAAATTGACGAAAATTCAAAATTTTCAGAAATTTCAAATT</left_flank>
        <right_flank>TTGGGAAAGTTTTCAGAATTTCAAAATCGGAGGTTTTGCGCCAAACAAAT</right_flank>
        <qual_score>37</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTCAGTGATGGAATTGAAAAGATATGAAATCACTGTGAGCTGCTCCGAATCAAATTTCTGTTTGGAATTTTTTGAAAATTCTCAAATAATTCCATAAATTCGATGGAACAGCTCACCTGGATGTGAAAAGAAGATGGTGGTGACATTTTGTTCTTGGCGGGAATTTGAATTTTTGAAAATTGGAAAAAAAATTAATAAAGATAACATTTTGGAAAAATATTGGGAAAGAATTTGGAAAGAAAATTGTTCGATAATAATTTTTTACAGATGATCTTTGCCCGTTTTTTAAAGAAAAAATAATTAGAAAAAGTTGGGATTATGGATATTTCAAAGTGGGCGGGGTTTTAAAAGGGGGCGGAGCCTAAAGAATATTGATGAAGAATTACAAGATTGGGGAAGTTAGAAAATTCTAAAAGCAGGGAACATTTTTTGGTGGGAATCTCAATTTTTGAAATTCCAAAAATTGACGAAAATTCAAAATTTTCAGAAATTTCAAATTATTGGGAAAGTTTTCAGAATTTCAAAATCGGAGGTTTTGCGCCAAACAAATAAAAATTCCATTCAAAAACTCGAATCCTCTAATTTTCCAAATATCTTGTAAATCTAATATTTTGAAATACAGTAACCGGAAAAGTTGATATTTCATCATTTTCAATGAGAAATAACAAAGTTTAGGGATCTCAAAAAGTAGGGCAAAATTGTTGGATTGTTCTGATAATTTCAGAAAACGTAGAACGAAAATAGAACTATATTTTCATAGTTGACAACTTTTTTGTAACGCTGATGTCTGAAGAGATACATACTCTTGAAAGGACATTTATTCTTTCTTGAAATTCTTTTCTTGAAAATATAGGACCCTTGAAAAGTGTCCTCTATCTTTTCAGGGAGTGATTTTTCAAAAAAGTTGTCAACTACAACAATGAAGCTCTATTTTTGTTTTATATCTTCTGAAATTTTTCAGAACAATCCAACAATTTTGACCTAATTTTTGAGAGCTCTA</canonical>
            <polymorphic>GTCAGTGATGGAATTGAAAAGATATGAAATCACTGTGAGCTGCTCCGAATCAAATTTCTGTTTGGAATTTTTTGAAAATTCTCAAATAATTCCATAAATTCGATGGAACAGCTCACCTGGATGTGAAAAGAAGATGGTGGTGACATTTTGTTCTTGGCGGGAATTTGAATTTTTGAAAATTGGAAAAAAAATTAATAAAGATAACATTTTGGAAAAATATTGGGAAAGAATTTGGAAAGAAAATTGTTCGATAATAATTTTTTACAGATGATCTTTGCCCGTTTTTTAAAGAAAAAATAATTAGAAAAAGTTGGGATTATGGATATTTCAAAGTGGGCGGGGTTTTAAAAGGGGGCGGAGCCTAAAGAATATTGATGAAGAATTACAAGATTGGGGAAGTTAGAAAATTCTAAAAGCAGGGAACATTTTTTGGTGGGAATCTCAATTTTTGAAATTCCAAAAATTGACGAAAATTCAAAATTTTCAGAAATTTCAAATTWTTGGGAAAGTTTTCAGAATTTCAAAATCGGAGGTTTTGCGCCAAACAAATAAAAATTCCATTCAAAAACTCGAATCCTCTAATTTTCCAAATATCTTGTAAATCTAATATTTTGAAATACAGTAACCGGAAAAGTTGATATTTCATCATTTTCAATGAGAAATAACAAAGTTTAGGGATCTCAAAAAGTAGGGCAAAATTGTTGGATTGTTCTGATAATTTCAGAAAACGTAGAACGAAAATAGAACTATATTTTCATAGTTGACAACTTTTTTGTAACGCTGATGTCTGAAGAGATACATACTCTTGAAAGGACATTTATTCTTTCTTGAAATTCTTTTCTTGAAAATATAGGACCCTTGAAAAGTGTCCTCTATCTTTTCAGGGAGTGATTTTTCAAAAAAGTTGTCAACTACAACAATGAAGCTCTATTTTTGTTTTATATCTTCTGAAATTTTTCAGAACAATCCAACAATTTTGACCTAATTTTTGAGAGCTCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAGATTGGGGAAGTTAGAAAAT</pcr_primer_p1>
		<pcr_primer_p2>AACTTTTCCGGTTACTGTATTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAGATTGGGGAAGTTAGAAAATTCTAAAAGCAGGGAACATTTTTTGGTGGGAATCTCAATTTTTGAAATTCCAAAAATTGACGAAAATTCAAAATTTTCAGAAATTTCAAATTATTGGGAAAGTTTTCAGAATTTCAAAATCGGAGGTTTTGCGCCAAACAAATAAAAATTCCATTCAAAAACTCGAATCCTCTAATTTTCCAAATATCTTGTAAATCTAATATTTTGAAATACAGTAACCGGAAAAGTT</canonical_amplicon>
		<polymorphic_amplicon>AAGATTGGGGAAGTTAGAAAATTCTAAAAGCAGGGAACATTTTTTGGTGGGAATCTCAATTTTTGAAATTCCAAAAATTGACGAAAATTCAAAATTTTCAGAAATTTCAAATTWTTGGGAAAGTTTTCAGAATTTCAAAATCGGAGGTTTTGCGCCAAACAAATAAAAATTCCATTCAAAAACTCGAATCCTCTAATTTTCCAAATATCTTGTAAATCTAATATTTTGAAATACAGTAACCGGAAAAGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39679</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>83642</contig_pos>
        <strand>+</strand>
        <context>TAGATTTTCG[C/T]AAAAAAAATT</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTTAGATTAAAAATGGATTTTCATGTTTAGGTAACTTCTAGATTTTCG</left_flank>
        <right_flank>AAAAAAAATTATATTTTCAAAAAACCCAAAAGAGGTTTTGTGAAAATTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATTCAATTTTTGGAATCGAGAACCTTTCAGAATTTCAAAAAATATTATTTTGAACATCTAGAAATTCCAAATGTTTGAAAATTCAGAATTCTAGCATTCCTTATATGAATTCCTTCAAATTTCTCTGAAACTTCTAAATATTGTAATTTCTGAGAATTCGATGATTCGGGAAATTTTCGAATTTTGGGGATTTTTTTTGAATTTTTGAGCTTTATTCACAATTTCTAAAACTTCTGAAATTCCAATCTAAGTAATGATTTCATTTGGAAGTCCAAATTTGTTACCACGAATAAAAATATTCCAGTTGGGTGAGCAAAAATCTTTCCATTTGAAGCATAGGAGGGAGAAACGGGAGAACAAATAAATAAGTAACACATTTTATATCTAACTGAATTATTTATGGGATTTCTGTTTAGCAGAAAATGGTTAGAAATTGCATAGAATATGTGTTTTAGATTAAAAATGGATTTTCATGTTTAGGTAACTTCTAGATTTTCGAAAAAAAAATTATATTTTCAAAAAACCCAAAAGAGGTTTTGTGAAAATTTTCAAAAAGCTGTTTTGAGAAATCTCACAATCAGAGTAAATTTTCAGAAAAAAATTGATTAGAGAGCTAATTTTAGAAAAATTCAAGAAATCAAAATTCTTTTTCTTTTTTTTGAAATTCTGAAATCTCTGAATCTCAGAATTTTCAGGAAAATCGGAAAAACTGGAAAAACTTTCAACAAGTGGGAATTTTGAAAATCCTAATAGACTACAATTTCCAAATCAATTTCTTCTTTTTTCTCAGTTTTTAAAAAATAAATTGACCGGAAAATTTGCATAGCTTTTTAACAGGAATATCCATATAGGTACCTTGAGAAAAAAAATGTCCTTACAAAAAATCTAAATTTGCATGATAAAAGATTGAAAAAGGGGACGAAGACACCTCACAATAAGCACAACAATGGCCAGACTTTTTGGAAAAGATGGGAAAAAAGGAGAAAATGGAGACGAGAT</canonical>
            <polymorphic>CATTCAATTTTTGGAATCGAGAACCTTTCAGAATTTCAAAAAATATTATTTTGAACATCTAGAAATTCCAAATGTTTGAAAATTCAGAATTCTAGCATTCCTTATATGAATTCCTTCAAATTTCTCTGAAACTTCTAAATATTGTAATTTCTGAGAATTCGATGATTCGGGAAATTTTCGAATTTTGGGGATTTTTTTTGAATTTTTGAGCTTTATTCACAATTTCTAAAACTTCTGAAATTCCAATCTAAGTAATGATTTCATTTGGAAGTCCAAATTTGTTACCACGAATAAAAATATTCCAGTTGGGTGAGCAAAAATCTTTCCATTTGAAGCATAGGAGGGAGAAACGGGAGAACAAATAAATAAGTAACACATTTTATATCTAACTGAATTATTTATGGGATTTCTGTTTAGCAGAAAATGGTTAGAAATTGCATAGAATATGTGTTTTAGATTAAAAATGGATTTTCATGTTTAGGTAACTTCTAGATTTTCGYAAAAAAAATTATATTTTCAAAAAACCCAAAAGAGGTTTTGTGAAAATTTTCAAAAAGCTGTTTTGAGAAATCTCACAATCAGAGTAAATTTTCAGAAAAAAATTGATTAGAGAGCTAATTTTAGAAAAATTCAAGAAATCAAAATTCTTTTTCTTTTTTTTGAAATTCTGAAATCTCTGAATCTCAGAATTTTCAGGAAAATCGGAAAAACTGGAAAAACTTTCAACAAGTGGGAATTTTGAAAATCCTAATAGACTACAATTTCCAAATCAATTTCTTCTTTTTTCTCAGTTTTTAAAAAATAAATTGACCGGAAAATTTGCATAGCTTTTTAACAGGAATATCCATATAGGTACCTTGAGAAAAAAAATGTCCTTACAAAAAATCTAAATTTGCATGATAAAAGATTGAAAAAGGGGACGAAGACACCTCACAATAAGCACAACAATGGCCAGACTTTTTGGAAAAGATGGGAAAAAAGGAGAAAATGGAGACGAGAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>503 319 178</canonical_bands>
                <polymorphic_bands>822 178</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>502 319 142 19 18</canonical_bands>
                <polymorphic_bands>821 142 19 18</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AACGGGAGAACAAATAAATAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTCTGAAAATTTACTCTGATTGTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACGGGAGAACAAATAAATAAGTAACACATTTTATATCTAACTGAATTATTTATGGGATTTCTGTTTAGCAGAAAATGGTTAGAAATTGCATAGAATATGTGTTTTAGATTAAAAATGGATTTTCATGTTTAGGTAACTTCTAGATTTTCGAAAAAAAAATTATATTTTCAAAAAACCCAAAAGAGGTTTTGTGAAAATTTTCAAAAAGCTGTTTTGAGAAATCTCACAATCAGAGTAAATTTTCAGAA</canonical_amplicon>
		<polymorphic_amplicon>AACGGGAGAACAAATAAATAAGTAACACATTTTATATCTAACTGAATTATTTATGGGATTTCTGTTTAGCAGAAAATGGTTAGAAATTGCATAGAATATGTGTTTTAGATTAAAAATGGATTTTCATGTTTAGGTAACTTCTAGATTTTCGYAAAAAAAATTATATTTTCAAAAAACCCAAAAGAGGTTTTGTGAAAATTTTCAAAAAGCTGTTTTGAGAAATCTCACAATCAGAGTAAATTTTCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39680</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>83680</contig_pos>
        <strand></strand>
        <context>AAAAGAGGTT[T/C]TGTGAAAATT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCTAGATTTTCGAAAAAAAAATTATATTTTCAAAAAACCCAAAAGAGGTT</left_flank>
        <right_flank>TGTGAAAATTTTCAAAAAGCTGTTTTGAGAAATCTCACAATCAGAGTAAA</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAATATTATTTTGAACATCTAGAAATTCCAAATGTTTGAAAATTCAGAATTCTAGCATTCCTTATATGAATTCCTTCAAATTTCTCTGAAACTTCTAAATATTGTAATTTCTGAGAATTCGATGATTCGGGAAATTTTCGAATTTTGGGGATTTTTTTTGAATTTTTGAGCTTTATTCACAATTTCTAAAACTTCTGAAATTCCAATCTAAGTAATGATTTCATTTGGAAGTCCAAATTTGTTACCACGAATAAAAATATTCCAGTTGGGTGAGCAAAAATCTTTCCATTTGAAGCATAGGAGGGAGAAACGGGAGAACAAATAAATAAGTAACACATTTTATATCTAACTGAATTATTTATGGGATTTCTGTTTAGCAGAAAATGGTTAGAAATTGCATAGAATATGTGTTTTAGATTAAAAATGGATTTTCATGTTTAGGTAACTTCTAGATTTTCGAAAAAAAAATTATATTTTCAAAAAACCCAAAAGAGGTTTTGTGAAAATTTTCAAAAAGCTGTTTTGAGAAATCTCACAATCAGAGTAAATTTTCAGAAAAAAATTGATTAGAGAGCTAATTTTAGAAAAATTCAAGAAATCAAAATTCTTTTTCTTTTTTTTGAAATTCTGAAATCTCTGAATCTCAGAATTTTCAGGAAAATCGGAAAAACTGGAAAAACTTTCAACAAGTGGGAATTTTGAAAATCCTAATAGACTACAATTTCCAAATCAATTTCTTCTTTTTTCTCAGTTTTTAAAAAATAAATTGACCGGAAAATTTGCATAGCTTTTTAACAGGAATATCCATATAGGTACCTTGAGAAAAAAAATGTCCTTACAAAAAATCTAAATTTGCATGATAAAAGATTGAAAAAGGGGACGAAGACACCTCACAATAAGCACAACAATGGCCAGACTTTTTGGAAAAGATGGGAAAAAAGGAGAAAATGGAGACGAGATTCCTCTTTAAAATTTGTCGCCCCGAAAGAGCGAGTGAG</canonical>
            <polymorphic>AAAAATATTATTTTGAACATCTAGAAATTCCAAATGTTTGAAAATTCAGAATTCTAGCATTCCTTATATGAATTCCTTCAAATTTCTCTGAAACTTCTAAATATTGTAATTTCTGAGAATTCGATGATTCGGGAAATTTTCGAATTTTGGGGATTTTTTTTGAATTTTTGAGCTTTATTCACAATTTCTAAAACTTCTGAAATTCCAATCTAAGTAATGATTTCATTTGGAAGTCCAAATTTGTTACCACGAATAAAAATATTCCAGTTGGGTGAGCAAAAATCTTTCCATTTGAAGCATAGGAGGGAGAAACGGGAGAACAAATAAATAAGTAACACATTTTATATCTAACTGAATTATTTATGGGATTTCTGTTTAGCAGAAAATGGTTAGAAATTGCATAGAATATGTGTTTTAGATTAAAAATGGATTTTCATGTTTAGGTAACTTCTAGATTTTCGAAAAAAAAATTATATTTTCAAAAAACCCAAAAGAGGTTYTGTGAAAATTTTCAAAAAGCTGTTTTGAGAAATCTCACAATCAGAGTAAATTTTCAGAAAAAAATTGATTAGAGAGCTAATTTTAGAAAAATTCAAGAAATCAAAATTCTTTTTCTTTTTTTTGAAATTCTGAAATCTCTGAATCTCAGAATTTTCAGGAAAATCGGAAAAACTGGAAAAACTTTCAACAAGTGGGAATTTTGAAAATCCTAATAGACTACAATTTCCAAATCAATTTCTTCTTTTTTCTCAGTTTTTAAAAAATAAATTGACCGGAAAATTTGCATAGCTTTTTAACAGGAATATCCATATAGGTACCTTGAGAAAAAAAATGTCCTTACAAAAAATCTAAATTTGCATGATAAAAGATTGAAAAAGGGGACGAAGACACCTCACAATAAGCACAACAATGGCCAGACTTTTTGGAAAAGATGGGAAAAAAGGAGAAAATGGAGACGAGATTCCTCTTTAAAATTTGTCGCCCCGAAAGAGCGAGTGAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AACGGGAGAACAAATAAATAAGT</pcr_primer_p1>
		<pcr_primer_p2>TTCTGAAAATTTACTCTGATTGTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AACGGGAGAACAAATAAATAAGTAACACATTTTATATCTAACTGAATTATTTATGGGATTTCTGTTTAGCAGAAAATGGTTAGAAATTGCATAGAATATGTGTTTTAGATTAAAAATGGATTTTCATGTTTAGGTAACTTCTAGATTTTCGAAAAAAAAATTATATTTTCAAAAAACCCAAAAGAGGTTTTGTGAAAATTTTCAAAAAGCTGTTTTGAGAAATCTCACAATCAGAGTAAATTTTCAGAA</canonical_amplicon>
		<polymorphic_amplicon>AACGGGAGAACAAATAAATAAGTAACACATTTTATATCTAACTGAATTATTTATGGGATTTCTGTTTAGCAGAAAATGGTTAGAAATTGCATAGAATATGTGTTTTAGATTAAAAATGGATTTTCATGTTTAGGTAACTTCTAGATTTTCGAAAAAAAAATTATATTTTCAAAAAACCCAAAAGAGGTTYTGTGAAAATTTTCAAAAAGCTGTTTTGAGAAATCTCACAATCAGAGTAAATTTTCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39681</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>84129</contig_pos>
        <strand></strand>
        <context>AAAAGGAGAA[A/T]MTGGAGACGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAAGCACAACAATGGCCAGACTTTTTGGAAAAGATGGGAAAAAAGGAGAA</left_flank>
        <right_flank>ATGGAGACGAGATTCCTCTTTAAAATTTGTCGCCCCGAAAGAGCGAGTGA</right_flank>
        <qual_score>35</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAGATTTTCGAAAAAAAAATTATATTTTCAAAAAACCCAAAAGAGGTTTTGTGAAAATTTTCAAAAAGCTGTTTTGAGAAATCTCACAATCAGAGTAAATTTTCAGAAAAAAATTGATTAGAGAGCTAATTTTAGAAAAATTCAAGAAATCAAAATTCTTTTTCTTTTTTTTGAAATTCTGAAATCTCTGAATCTCAGAATTTTCAGGAAAATCGGAAAAACTGGAAAAACTTTCAACAAGTGGGAATTTTGAAAATCCTAATAGACTACAATTTCCAAATCAATTTCTTCTTTTTTCTCAGTTTTTAAAAAATAAATTGACCGGAAAATTTGCATAGCTTTTTAACAGGAATATCCATATAGGTACCTTGAGAAAAAAAATGTCCTTACAAAAAATCTAAATTTGCATGATAAAAGATTGAAAAAGGGGACGAAGACACCTCACAATAAGCACAACAATGGCCAGACTTTTTGGAAAAGATGGGAAAAAAGGAGAAAATGGAGACGAGATTCCTCTTTAAAATTTGTCGCCCCGAAAGAGCGAGTGAGGAAATTGAATAAAGTTCTTGTTTTGTTGTTGTTTAGAATGAGATTTTTCTTTTCAAGAGCTCTTCAAAAGCCCAAAAAATACTAAAAATCAGAATCTCGAATTCTCAGAATCACAAATTTTCGTGACTTAAAAATTGCAGAACTTGAGAATCTCGCCTTTTACAGCACCTAGCGCACGGCTTGGCAAAATTTTTTAGGATTTTACAAACATGAGCAATACACGGAGCATATGAACAAATATGGGTGCAAACAGGAGACAACGTTATATAGAAAATGAAGCCAGACAATTTTTTTTTCTGATTTTCGAGGAAGATACTTCTTTAATTTAGAGTAGGATTAGTCAATGATGAAAATGCACTGAAGACGTCATGAGGCACTCAAAATAAGCACCTCGTGGAACCTAGATGAATTTTTTCACGCCAGCTCTTTGAGCTAACTTATCTCGGTTA</canonical>
            <polymorphic>TCTAGATTTTCGAAAAAAAAATTATATTTTCAAAAAACCCAAAAGAGGTTTTGTGAAAATTTTCAAAAAGCTGTTTTGAGAAATCTCACAATCAGAGTAAATTTTCAGAAAAAAATTGATTAGAGAGCTAATTTTAGAAAAATTCAAGAAATCAAAATTCTTTTTCTTTTTTTTGAAATTCTGAAATCTCTGAATCTCAGAATTTTCAGGAAAATCGGAAAAACTGGAAAAACTTTCAACAAGTGGGAATTTTGAAAATCCTAATAGACTACAATTTCCAAATCAATTTCTTCTTTTTTCTCAGTTTTTAAAAAATAAATTGACCGGAAAATTTGCATAGCTTTTTAACAGGAATATCCATATAGGTACCTTGAGAAAAAAAATGTCCTTACAAAAAATCTAAATTTGCATGATAAAAGATTGAAAAAGGGGACGAAGACACCTCACAATAAGCACAACAATGGCCAGACTTTTTGGAAAAGATGGGAAAAAAGGAGAAWATGGAGACGAGATTCCTCTTTAAAATTTGTCGCCCCGAAAGAGCGAGTGAGGAAATTGAATAAAGTTCTTGTTTTGTTGTTGTTTAGAATGAGATTTTTCTTTTCAAGAGCTCTTCAAAAGCCCAAAAAATACTAAAAATCAGAATCTCGAATTCTCAGAATCACAAATTTTCGTGACTTAAAAATTGCAGAACTTGAGAATCTCGCCTTTTACAGCACCTAGCGCACGGCTTGGCAAAATTTTTTAGGATTTTACAAACATGAGCAATACACGGAGCATATGAACAAATATGGGTGCAAACAGGAGACAACGTTATATAGAAAATGAAGCCAGACAATTTTTTTTTCTGATTTTCGAGGAAGATACTTCTTTAATTTAGAGTAGGATTAGTCAATGATGAAAATGCACTGAAGACGTCATGAGGCACTCAAAATAAGCACCTCGTGGAACCTAGATGAATTTTTTCACGCCAGCTCTTTGAGCTAACTTATCTCGGTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCATAGCTTTTTAACAGGAATA</pcr_primer_p1>
		<pcr_primer_p2>AACAACAACAAAACAAGAACTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGCATAGCTTTTTAACAGGAATATCCATATAGGTACCTTGAGAAAAAAAATGTCCTTACAAAAAATCTAAATTTGCATGATAAAAGATTGAAAAAGGGGACGAAGACACCTCACAATAAGCACAACAATGGCCAGACTTTTTGGAAAAGATGGGAAAAAAGGAGAAAATGGAGACGAGATTCCTCTTTAAAATTTGTCGCCCCGAAAGAGCGAGTGAGGAAATTGAATAAAGTTCTTGTTTTGTTGTTGTT</canonical_amplicon>
		<polymorphic_amplicon>TGCATAGCTTTTTAACAGGAATATCCATATAGGTACCTTGAGAAAAAAAATGTCCTTACAAAAAATCTAAATTTGCATGATAAAAGATTGAAAAAGGGGACGAAGACACCTCACAATAAGCACAACAATGGCCAGACTTTTTGGAAAAGATGGGAAAAAAGGAGAAWATGGAGACGAGATTCCTCTTTAAAATTTGTCGCCCCGAAAGAGCGAGTGAGGAAATTGAATAAAGTTCTTGTTTTGTTGTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39682</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>84130</contig_pos>
        <strand></strand>
        <context>AAAGGAGAAW[A/C]TGGAGACGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAGCACAACAATGGCCAGACTTTTTGGAAAAGATGGGAAAAAAGGAGAAA</left_flank>
        <right_flank>TGGAGACGAGATTCCTCTTTAAAATTTGTCGCCCCGAAAGAGCGAGTGAG</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTAGATTTTCGAAAAAAAAATTATATTTTCAAAAAACCCAAAAGAGGTTTTGTGAAAATTTTCAAAAAGCTGTTTTGAGAAATCTCACAATCAGAGTAAATTTTCAGAAAAAAATTGATTAGAGAGCTAATTTTAGAAAAATTCAAGAAATCAAAATTCTTTTTCTTTTTTTTGAAATTCTGAAATCTCTGAATCTCAGAATTTTCAGGAAAATCGGAAAAACTGGAAAAACTTTCAACAAGTGGGAATTTTGAAAATCCTAATAGACTACAATTTCCAAATCAATTTCTTCTTTTTTCTCAGTTTTTAAAAAATAAATTGACCGGAAAATTTGCATAGCTTTTTAACAGGAATATCCATATAGGTACCTTGAGAAAAAAAATGTCCTTACAAAAAATCTAAATTTGCATGATAAAAGATTGAAAAAGGGGACGAAGACACCTCACAATAAGCACAACAATGGCCAGACTTTTTGGAAAAGATGGGAAAAAAGGAGAAAATGGAGACGAGATTCCTCTTTAAAATTTGTCGCCCCGAAAGAGCGAGTGAGGAAATTGAATAAAGTTCTTGTTTTGTTGTTGTTTAGAATGAGATTTTTCTTTTCAAGAGCTCTTCAAAAGCCCAAAAAATACTAAAAATCAGAATCTCGAATTCTCAGAATCACAAATTTTCGTGACTTAAAAATTGCAGAACTTGAGAATCTCGCCTTTTACAGCACCTAGCGCACGGCTTGGCAAAATTTTTTAGGATTTTACAAACATGAGCAATACACGGAGCATATGAACAAATATGGGTGCAAACAGGAGACAACGTTATATAGAAAATGAAGCCAGACAATTTTTTTTTCTGATTTTCGAGGAAGATACTTCTTTAATTTAGAGTAGGATTAGTCAATGATGAAAATGCACTGAAGACGTCATGAGGCACTCAAAATAAGCACCTCGTGGAACCTAGATGAATTTTTTCACGCCAGCTCTTTGAGCTAACTTATCTCGGTTAC</canonical>
            <polymorphic>CTAGATTTTCGAAAAAAAAATTATATTTTCAAAAAACCCAAAAGAGGTTTTGTGAAAATTTTCAAAAAGCTGTTTTGAGAAATCTCACAATCAGAGTAAATTTTCAGAAAAAAATTGATTAGAGAGCTAATTTTAGAAAAATTCAAGAAATCAAAATTCTTTTTCTTTTTTTTGAAATTCTGAAATCTCTGAATCTCAGAATTTTCAGGAAAATCGGAAAAACTGGAAAAACTTTCAACAAGTGGGAATTTTGAAAATCCTAATAGACTACAATTTCCAAATCAATTTCTTCTTTTTTCTCAGTTTTTAAAAAATAAATTGACCGGAAAATTTGCATAGCTTTTTAACAGGAATATCCATATAGGTACCTTGAGAAAAAAAATGTCCTTACAAAAAATCTAAATTTGCATGATAAAAGATTGAAAAAGGGGACGAAGACACCTCACAATAAGCACAACAATGGCCAGACTTTTTGGAAAAGATGGGAAAAAAGGAGAAAMTGGAGACGAGATTCCTCTTTAAAATTTGTCGCCCCGAAAGAGCGAGTGAGGAAATTGAATAAAGTTCTTGTTTTGTTGTTGTTTAGAATGAGATTTTTCTTTTCAAGAGCTCTTCAAAAGCCCAAAAAATACTAAAAATCAGAATCTCGAATTCTCAGAATCACAAATTTTCGTGACTTAAAAATTGCAGAACTTGAGAATCTCGCCTTTTACAGCACCTAGCGCACGGCTTGGCAAAATTTTTTAGGATTTTACAAACATGAGCAATACACGGAGCATATGAACAAATATGGGTGCAAACAGGAGACAACGTTATATAGAAAATGAAGCCAGACAATTTTTTTTTCTGATTTTCGAGGAAGATACTTCTTTAATTTAGAGTAGGATTAGTCAATGATGAAAATGCACTGAAGACGTCATGAGGCACTCAAAATAAGCACCTCGTGGAACCTAGATGAATTTTTTCACGCCAGCTCTTTGAGCTAACTTATCTCGGTTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGCATAGCTTTTTAACAGGAATA</pcr_primer_p1>
		<pcr_primer_p2>AACAACAACAAAACAAGAACTTT</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TGCATAGCTTTTTAACAGGAATATCCATATAGGTACCTTGAGAAAAAAAATGTCCTTACAAAAAATCTAAATTTGCATGATAAAAGATTGAAAAAGGGGACGAAGACACCTCACAATAAGCACAACAATGGCCAGACTTTTTGGAAAAGATGGGAAAAAAGGAGAAAATGGAGACGAGATTCCTCTTTAAAATTTGTCGCCCCGAAAGAGCGAGTGAGGAAATTGAATAAAGTTCTTGTTTTGTTGTTGTT</canonical_amplicon>
		<polymorphic_amplicon>TGCATAGCTTTTTAACAGGAATATCCATATAGGTACCTTGAGAAAAAAAATGTCCTTACAAAAAATCTAAATTTGCATGATAAAAGATTGAAAAAGGGGACGAAGACACCTCACAATAAGCACAACAATGGCCAGACTTTTTGGAAAAGATGGGAAAAAAGGAGAAAMTGGAGACGAGATTCCTCTTTAAAATTTGTCGCCCCGAAAGAGCGAGTGAGGAAATTGAATAAAGTTCTTGTTTTGTTGTTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39683</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>133946</contig_pos>
        <strand>+</strand>
        <context>AAATAATCTG[G/T]CTGTGTGTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTACTAAAATTTGAATTCTTGTTCATTTTCAGAATCATCCAAATAATCTG</left_flank>
        <right_flank>CTGTGTGTCTGTTTTTCCAAAAATAGTAAATGTTTCCCATTATTCTTGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAAAAAAATTATATAAATAAACAGTTAAAAAATTTTCTCAAGTTGTTTTAAAATTTTGGTTTCTGAAATTCTTTAAAACTCATTGCCAGAAGTTTCTAAAATTCAATATTTTCCCAAATCCAAAAAGATTCAAAAAATACTGAAAACTTTAAAATTTTTTATTTTTGAATTTCCAAAAATTGTGAATTTCAGAACATTTGGAATTCCAAAAGTTTCACAAAATTCTTTAAAAATCCCACATTTTCCGGACATTTCAAGAATTTCAGATTTTCAGTAATCTTTAAAAATTTCGGTGTTTTGGGGGTTTTCCAAAAGTTTTGGATTTAAAAAAATTGGAATTTTCAAAAATAGGATATTCCAAAAATTCAGAATCTCAAAATATTCGAAAATTTCAAAAATTACCGGAAATTGAAAGATTTCCTAAAATTCAAAGTTTTTGAATTTTGAATTACTAAAATTTGAATTCTTGTTCATTTTCAGAATCATCCAAATAATCTGTCTGTGTGTCTGTTTTTCCAAAAATAGTAAATGTTTCCCATTATTCTTGATCTCTTATGTTTAATCTTTTTTTAATGAATCCTTCGTAATATCTCCTTCACCAAATTAGAAGGACCTCGTGGGAAAAAGGGCCGGACTTCTAAAATGGGCGTGGCCTATTTAACCGCATTTTGTATTTTACTGTCAGTGCACTGACTTTAGCAGTTTTTTGCAAAATTTTCTAGAATTTTAAAATTCAAAAATTGTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTTGTTCTCCGCAACTTGCGATTTTTCTGAAAATTCAGAATTTCAGAATCCTTCCACATTGTCACTTATTCTTCTTCTTGGAATCTTATATTCTTCTCATTTCCGCATCTCCCTCCCCTTTATTCATTTTTCTTTTTCCGCCTAATCTTATATTTTTATACCTTTTCATCATTAAAAGAATTACTTGATTATAGGAAAATATAGGTGAGGAATAAAGT</canonical>
            <polymorphic>AGAAAAAAATTATATAAATAAACAGTTAAAAAATTTTCTCAAGTTGTTTTAAAATTTTGGTTTCTGAAATTCTTTAAAACTCATTGCCAGAAGTTTCTAAAATTCAATATTTTCCCAAATCCAAAAAGATTCAAAAAATACTGAAAACTTTAAAATTTTTTATTTTTGAATTTCCAAAAATTGTGAATTTCAGAACATTTGGAATTCCAAAAGTTTCACAAAATTCTTTAAAAATCCCACATTTTCCGGACATTTCAAGAATTTCAGATTTTCAGTAATCTTTAAAAATTTCGGTGTTTTGGGGGTTTTCCAAAAGTTTTGGATTTAAAAAAATTGGAATTTTCAAAAATAGGATATTCCAAAAATTCAGAATCTCAAAATATTCGAAAATTTCAAAAATTACCGGAAATTGAAAGATTTCCTAAAATTCAAAGTTTTTGAATTTTGAATTACTAAAATTTGAATTCTTGTTCATTTTCAGAATCATCCAAATAATCTGKCTGTGTGTCTGTTTTTCCAAAAATAGTAAATGTTTCCCATTATTCTTGATCTCTTATGTTTAATCTTTTTTTAATGAATCCTTCGTAATATCTCCTTCACCAAATTAGAAGGACCTCGTGGGAAAAAGGGCCGGACTTCTAAAATGGGCGTGGCCTATTTAACCGCATTTTGTATTTTACTGTCAGTGCACTGACTTTAGCAGTTTTTTGCAAAATTTTCTAGAATTTTAAAATTCAAAAATTGTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTTGTTCTCCGCAACTTGCGATTTTTCTGAAAATTCAGAATTTCAGAATCCTTCCACATTGTCACTTATTCTTCTTCTTGGAATCTTATATTCTTCTCATTTCCGCATCTCCCTCCCCTTTATTCATTTTTCTTTTTCCGCCTAATCTTATATTTTTATACCTTTTCATCATTAAAAGAATTACTTGATTATAGGAAAATATAGGTGAGGAATAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAATTTCCAAAAATTGTGA</pcr_primer_p1>
		<pcr_primer_p2>AAAGATTAAACATAAGAGATCAAGAA</pcr_primer_p2>
		<pcr_amplicon_size>403</pcr_amplicon_size>
		<canonical_amplicon>TTGAATTTCCAAAAATTGTGAATTTCAGAACATTTGGAATTCCAAAAGTTTCACAAAATTCTTTAAAAATCCCACATTTTCCGGACATTTCAAGAATTTCAGATTTTCAGTAATCTTTAAAAATTTCGGTGTTTTGGGGGTTTTCCAAAAGTTTTGGATTTAAAAAAATTGGAATTTTCAAAAATAGGATATTCCAAAAATTCAGAATCTCAAAATATTCGAAAATTTCAAAAATTACCGGAAATTGAAAGATTTCCTAAAATTCAAAGTTTTTGAATTTTGAATTACTAAAATTTGAATTCTTGTTCATTTTCAGAATCATCCAAATAATCTGTCTGTGTGTCTGTTTTTCCAAAAATAGTAAATGTTTCCCATTATTCTTGATCTCTTATGTTTAATCTTT</canonical_amplicon>
		<polymorphic_amplicon>TTGAATTTCCAAAAATTGTGAATTTCAGAACATTTGGAATTCCAAAAGTTTCACAAAATTCTTTAAAAATCCCACATTTTCCGGACATTTCAAGAATTTCAGATTTTCAGTAATCTTTAAAAATTTCGGTGTTTTGGGGGTTTTCCAAAAGTTTTGGATTTAAAAAAATTGGAATTTTCAAAAATAGGATATTCCAAAAATTCAGAATCTCAAAATATTCGAAAATTTCAAAAATTACCGGAAATTGAAAGATTTCCTAAAATTCAAAGTTTTTGAATTTTGAATTACTAAAATTTGAATTCTTGTTCATTTTCAGAATCATCCAAATAATCTGKCTGTGTGTCTGTTTTTCCAAAAATAGTAAATGTTTCCCATTATTCTTGATCTCTTATGTTTAATCTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39684</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>133973</contig_pos>
        <strand>+</strand>
        <context>CCAAAAATAG[A/T]AAATGTTTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCAGAATCATCCAAATAATCTGTCTGTGTGTCTGTTTTTCCAAAAATAG</left_flank>
        <right_flank>AAATGTTTCCCATTATTCTTGATCTCTTATGTTTAATCTTTTTTTAATGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAATTTTCTCAAGTTGTTTTAAAATTTTGGTTTCTGAAATTCTTTAAAACTCATTGCCAGAAGTTTCTAAAATTCAATATTTTCCCAAATCCAAAAAGATTCAAAAAATACTGAAAACTTTAAAATTTTTTATTTTTGAATTTCCAAAAATTGTGAATTTCAGAACATTTGGAATTCCAAAAGTTTCACAAAATTCTTTAAAAATCCCACATTTTCCGGACATTTCAAGAATTTCAGATTTTCAGTAATCTTTAAAAATTTCGGTGTTTTGGGGGTTTTCCAAAAGTTTTGGATTTAAAAAAATTGGAATTTTCAAAAATAGGATATTCCAAAAATTCAGAATCTCAAAATATTCGAAAATTTCAAAAATTACCGGAAATTGAAAGATTTCCTAAAATTCAAAGTTTTTGAATTTTGAATTACTAAAATTTGAATTCTTGTTCATTTTCAGAATCATCCAAATAATCTGTCTGTGTGTCTGTTTTTCCAAAAATAGTAAATGTTTCCCATTATTCTTGATCTCTTATGTTTAATCTTTTTTTAATGAATCCTTCGTAATATCTCCTTCACCAAATTAGAAGGACCTCGTGGGAAAAAGGGCCGGACTTCTAAAATGGGCGTGGCCTATTTAACCGCATTTTGTATTTTACTGTCAGTGCACTGACTTTAGCAGTTTTTTGCAAAATTTTCTAGAATTTTAAAATTCAAAAATTGTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTTGTTCTCCGCAACTTGCGATTTTTCTGAAAATTCAGAATTTCAGAATCCTTCCACATTGTCACTTATTCTTCTTCTTGGAATCTTATATTCTTCTCATTTCCGCATCTCCCTCCCCTTTATTCATTTTTCTTTTTCCGCCTAATCTTATATTTTTATACCTTTTCATCATTAAAAGAATTACTTGATTATAGGAAAATATAGGTGAGGAATAAAGTATATAAATTCCTGACATAAGATTAAAT</canonical>
            <polymorphic>AAAAAATTTTCTCAAGTTGTTTTAAAATTTTGGTTTCTGAAATTCTTTAAAACTCATTGCCAGAAGTTTCTAAAATTCAATATTTTCCCAAATCCAAAAAGATTCAAAAAATACTGAAAACTTTAAAATTTTTTATTTTTGAATTTCCAAAAATTGTGAATTTCAGAACATTTGGAATTCCAAAAGTTTCACAAAATTCTTTAAAAATCCCACATTTTCCGGACATTTCAAGAATTTCAGATTTTCAGTAATCTTTAAAAATTTCGGTGTTTTGGGGGTTTTCCAAAAGTTTTGGATTTAAAAAAATTGGAATTTTCAAAAATAGGATATTCCAAAAATTCAGAATCTCAAAATATTCGAAAATTTCAAAAATTACCGGAAATTGAAAGATTTCCTAAAATTCAAAGTTTTTGAATTTTGAATTACTAAAATTTGAATTCTTGTTCATTTTCAGAATCATCCAAATAATCTGTCTGTGTGTCTGTTTTTCCAAAAATAGWAAATGTTTCCCATTATTCTTGATCTCTTATGTTTAATCTTTTTTTAATGAATCCTTCGTAATATCTCCTTCACCAAATTAGAAGGACCTCGTGGGAAAAAGGGCCGGACTTCTAAAATGGGCGTGGCCTATTTAACCGCATTTTGTATTTTACTGTCAGTGCACTGACTTTAGCAGTTTTTTGCAAAATTTTCTAGAATTTTAAAATTCAAAAATTGTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTTGTTCTCCGCAACTTGCGATTTTTCTGAAAATTCAGAATTTCAGAATCCTTCCACATTGTCACTTATTCTTCTTCTTGGAATCTTATATTCTTCTCATTTCCGCATCTCCCTCCCCTTTATTCATTTTTCTTTTTCCGCCTAATCTTATATTTTTATACCTTTTCATCATTAAAAGAATTACTTGATTATAGGAAAATATAGGTGAGGAATAAAGTATATAAATTCCTGACATAAGATTAAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTGAATTCTTGTTCATTTTCA</pcr_primer_p1>
		<pcr_primer_p2>GTAAAATACAAAATGCGGTTAAA</pcr_primer_p2>
		<pcr_amplicon_size>223</pcr_amplicon_size>
		<canonical_amplicon>ATTTGAATTCTTGTTCATTTTCAGAATCATCCAAATAATCTGTCTGTGTGTCTGTTTTTCCAAAAATAGTAAATGTTTCCCATTATTCTTGATCTCTTATGTTTAATCTTTTTTTAATGAATCCTTCGTAATATCTCCTTCACCAAATTAGAAGGACCTCGTGGGAAAAAGGGCCGGACTTCTAAAATGGGCGTGGCCTATTTAACCGCATTTTGTATTTTAC</canonical_amplicon>
		<polymorphic_amplicon>ATTTGAATTCTTGTTCATTTTCAGAATCATCCAAATAATCTGTCTGTGTGTCTGTTTTTCCAAAAATAGWAAATGTTTCCCATTATTCTTGATCTCTTATGTTTAATCTTTTTTTAATGAATCCTTCGTAATATCTCCTTCACCAAATTAGAAGGACCTCGTGGGAAAAAGGGCCGGACTTCTAAAATGGGCGTGGCCTATTTAACCGCATTTTGTATTTTAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39685</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>134233</contig_pos>
        <strand>+</strand>
        <context>CTTTCATTTG[C/T]TCTCCGCAAC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAATTGTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTTG</left_flank>
        <right_flank>TCTCCGCAACTTGCGATTTTTCTGAAAATTCAGAATTTCAGAATCCTTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCGGTGTTTTGGGGGTTTTCCAAAAGTTTTGGATTTAAAAAAATTGGAATTTTCAAAAATAGGATATTCCAAAAATTCAGAATCTCAAAATATTCGAAAATTTCAAAAATTACCGGAAATTGAAAGATTTCCTAAAATTCAAAGTTTTTGAATTTTGAATTACTAAAATTTGAATTCTTGTTCATTTTCAGAATCATCCAAATAATCTGTCTGTGTGTCTGTTTTTCCAAAAATAGTAAATGTTTCCCATTATTCTTGATCTCTTATGTTTAATCTTTTTTTAATGAATCCTTCGTAATATCTCCTTCACCAAATTAGAAGGACCTCGTGGGAAAAAGGGCCGGACTTCTAAAATGGGCGTGGCCTATTTAACCGCATTTTGTATTTTACTGTCAGTGCACTGACTTTAGCAGTTTTTTGCAAAATTTTCTAGAATTTTAAAATTCAAAAATTGTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTTGTTCTCCGCAACTTGCGATTTTTCTGAAAATTCAGAATTTCAGAATCCTTCCACATTGTCACTTATTCTTCTTCTTGGAATCTTATATTCTTCTCATTTCCGCATCTCCCTCCCCTTTATTCATTTTTCTTTTTCCGCCTAATCTTATATTTTTATACCTTTTCATCATTAAAAGAATTACTTGATTATAGGAAAATATAGGTGAGGAATAAAGTATATAAATTCCTGACATAAGATTAAATGTAGATTATTTTCAGAAATTATTTCTTCTAGAATATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAATTTTGATAAGGAGATTGGAACTTTTTTAAAACTGATTTTCAATAAATTCTAAATTCTATGATTTCCAAAAATTTTTAATTTTCGAACAATTCAGAATTTTGGAATCTCATTCTTTTCTAAAATTACGAAATTGTGAAAAAAACACGAAATTCGGGATTTCTAGAGACTTTTAAAGGAGGCCAG</canonical>
            <polymorphic>ATTTCGGTGTTTTGGGGGTTTTCCAAAAGTTTTGGATTTAAAAAAATTGGAATTTTCAAAAATAGGATATTCCAAAAATTCAGAATCTCAAAATATTCGAAAATTTCAAAAATTACCGGAAATTGAAAGATTTCCTAAAATTCAAAGTTTTTGAATTTTGAATTACTAAAATTTGAATTCTTGTTCATTTTCAGAATCATCCAAATAATCTGTCTGTGTGTCTGTTTTTCCAAAAATAGTAAATGTTTCCCATTATTCTTGATCTCTTATGTTTAATCTTTTTTTAATGAATCCTTCGTAATATCTCCTTCACCAAATTAGAAGGACCTCGTGGGAAAAAGGGCCGGACTTCTAAAATGGGCGTGGCCTATTTAACCGCATTTTGTATTTTACTGTCAGTGCACTGACTTTAGCAGTTTTTTGCAAAATTTTCTAGAATTTTAAAATTCAAAAATTGTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTTGYTCTCCGCAACTTGCGATTTTTCTGAAAATTCAGAATTTCAGAATCCTTCCACATTGTCACTTATTCTTCTTCTTGGAATCTTATATTCTTCTCATTTCCGCATCTCCCTCCCCTTTATTCATTTTTCTTTTTCCGCCTAATCTTATATTTTTATACCTTTTCATCATTAAAAGAATTACTTGATTATAGGAAAATATAGGTGAGGAATAAAGTATATAAATTCCTGACATAAGATTAAATGTAGATTATTTTCAGAAATTATTTCTTCTAGAATATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAATTTTGATAAGGAGATTGGAACTTTTTTAAAACTGATTTTCAATAAATTCTAAATTCTATGATTTCCAAAAATTTTTAATTTTCGAACAATTCAGAATTTTGGAATCTCATTCTTTTCTAAAATTACGAAATTGTGAAAAAAACACGAAATTCGGGATTTCTAGAGACTTTTAAAGGAGGCCAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAAAATTGTATTCTGAGTCGT</pcr_primer_p1>
		<pcr_primer_p2>CCTCACCTATATTTTCCTATAATCA</pcr_primer_p2>
		<pcr_amplicon_size>258</pcr_amplicon_size>
		<canonical_amplicon>TCAAAAATTGTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTTGTTCTCCGCAACTTGCGATTTTTCTGAAAATTCAGAATTTCAGAATCCTTCCACATTGTCACTTATTCTTCTTCTTGGAATCTTATATTCTTCTCATTTCCGCATCTCCCTCCCCTTTATTCATTTTTCTTTTTCCGCCTAATCTTATATTTTTATACCTTTTCATCATTAAAAGAATTACTTGATTATAGGAAAATATAGGTGAGG</canonical_amplicon>
		<polymorphic_amplicon>TCAAAAATTGTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTTGYTCTCCGCAACTTGCGATTTTTCTGAAAATTCAGAATTTCAGAATCCTTCCACATTGTCACTTATTCTTCTTCTTGGAATCTTATATTCTTCTCATTTCCGCATCTCCCTCCCCTTTATTCATTTTTCTTTTTCCGCCTAATCTTATATTTTTATACCTTTTCATCATTAAAAGAATTACTTGATTATAGGAAAATATAGGTGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39686</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>134304</contig_pos>
        <strand>+</strand>
        <context>TTATTCTTCT[A/T]CTTGGAATCW</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTGAAAATTCAGAATTTCAGAATCCTTCCACATTGTCACTTATTCTTCT</left_flank>
        <right_flank>CTTGGAATCTTATATTCTTCTCATTTCCGCATCTCCCTCCCCTTTATTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAAAATTCAGAATCTCAAAATATTCGAAAATTTCAAAAATTACCGGAAATTGAAAGATTTCCTAAAATTCAAAGTTTTTGAATTTTGAATTACTAAAATTTGAATTCTTGTTCATTTTCAGAATCATCCAAATAATCTGTCTGTGTGTCTGTTTTTCCAAAAATAGTAAATGTTTCCCATTATTCTTGATCTCTTATGTTTAATCTTTTTTTAATGAATCCTTCGTAATATCTCCTTCACCAAATTAGAAGGACCTCGTGGGAAAAAGGGCCGGACTTCTAAAATGGGCGTGGCCTATTTAACCGCATTTTGTATTTTACTGTCAGTGCACTGACTTTAGCAGTTTTTTGCAAAATTTTCTAGAATTTTAAAATTCAAAAATTGTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTTGTTCTCCGCAACTTGCGATTTTTCTGAAAATTCAGAATTTCAGAATCCTTCCACATTGTCACTTATTCTTCTTCTTGGAATCTTATATTCTTCTCATTTCCGCATCTCCCTCCCCTTTATTCATTTTTCTTTTTCCGCCTAATCTTATATTTTTATACCTTTTCATCATTAAAAGAATTACTTGATTATAGGAAAATATAGGTGAGGAATAAAGTATATAAATTCCTGACATAAGATTAAATGTAGATTATTTTCAGAAATTATTTCTTCTAGAATATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAATTTTGATAAGGAGATTGGAACTTTTTTAAAACTGATTTTCAATAAATTCTAAATTCTATGATTTCCAAAAATTTTTAATTTTCGAACAATTCAGAATTTTGGAATCTCATTCTTTTCTAAAATTACGAAATTGTGAAAAAAACACGAAATTCGGGATTTCTAGAGACTTTTAAAGGAGGCCAGGCACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCA</canonical>
            <polymorphic>CCAAAAATTCAGAATCTCAAAATATTCGAAAATTTCAAAAATTACCGGAAATTGAAAGATTTCCTAAAATTCAAAGTTTTTGAATTTTGAATTACTAAAATTTGAATTCTTGTTCATTTTCAGAATCATCCAAATAATCTGTCTGTGTGTCTGTTTTTCCAAAAATAGTAAATGTTTCCCATTATTCTTGATCTCTTATGTTTAATCTTTTTTTAATGAATCCTTCGTAATATCTCCTTCACCAAATTAGAAGGACCTCGTGGGAAAAAGGGCCGGACTTCTAAAATGGGCGTGGCCTATTTAACCGCATTTTGTATTTTACTGTCAGTGCACTGACTTTAGCAGTTTTTTGCAAAATTTTCTAGAATTTTAAAATTCAAAAATTGTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTTGTTCTCCGCAACTTGCGATTTTTCTGAAAATTCAGAATTTCAGAATCCTTCCACATTGTCACTTATTCTTCTWCTTGGAATCTTATATTCTTCTCATTTCCGCATCTCCCTCCCCTTTATTCATTTTTCTTTTTCCGCCTAATCTTATATTTTTATACCTTTTCATCATTAAAAGAATTACTTGATTATAGGAAAATATAGGTGAGGAATAAAGTATATAAATTCCTGACATAAGATTAAATGTAGATTATTTTCAGAAATTATTTCTTCTAGAATATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAATTTTGATAAGGAGATTGGAACTTTTTTAAAACTGATTTTCAATAAATTCTAAATTCTATGATTTCCAAAAATTTTTAATTTTCGAACAATTCAGAATTTTGGAATCTCATTCTTTTCTAAAATTACGAAATTGTGAAAAAAACACGAAATTCGGGATTTCTAGAGACTTTTAAAGGAGGCCAGGCACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATTCTGAGTCGTTCATCCTAC</pcr_primer_p1>
		<pcr_primer_p2>CCTCACCTATATTTTCCTATAATCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTTGTTCTCCGCAACTTGCGATTTTTCTGAAAATTCAGAATTTCAGAATCCTTCCACATTGTCACTTATTCTTCTTCTTGGAATCTTATATTCTTCTCATTTCCGCATCTCCCTCCCCTTTATTCATTTTTCTTTTTCCGCCTAATCTTATATTTTTATACCTTTTCATCATTAAAAGAATTACTTGATTATAGGAAAATATAGGTGAGG</canonical_amplicon>
		<polymorphic_amplicon>GTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTTGTTCTCCGCAACTTGCGATTTTTCTGAAAATTCAGAATTTCAGAATCCTTCCACATTGTCACTTATTCTTCTWCTTGGAATCTTATATTCTTCTCATTTCCGCATCTCCCTCCCCTTTATTCATTTTTCTTTTTCCGCCTAATCTTATATTTTTATACCTTTTCATCATTAAAAGAATTACTTGATTATAGGAAAATATAGGTGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39687</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>134314</contig_pos>
        <strand>+</strand>
        <context>WCTTGGAATC[A/T]TATATTCTTC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGAATTTCAGAATCCTTCCACATTGTCACTTATTCTTCTTCTTGGAATC</left_flank>
        <right_flank>TATATTCTTCTCATTTCCGCATCTCCCTCCCCTTTATTCATTTTTCTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATCTCAAAATATTCGAAAATTTCAAAAATTACCGGAAATTGAAAGATTTCCTAAAATTCAAAGTTTTTGAATTTTGAATTACTAAAATTTGAATTCTTGTTCATTTTCAGAATCATCCAAATAATCTGTCTGTGTGTCTGTTTTTCCAAAAATAGTAAATGTTTCCCATTATTCTTGATCTCTTATGTTTAATCTTTTTTTAATGAATCCTTCGTAATATCTCCTTCACCAAATTAGAAGGACCTCGTGGGAAAAAGGGCCGGACTTCTAAAATGGGCGTGGCCTATTTAACCGCATTTTGTATTTTACTGTCAGTGCACTGACTTTAGCAGTTTTTTGCAAAATTTTCTAGAATTTTAAAATTCAAAAATTGTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTTGTTCTCCGCAACTTGCGATTTTTCTGAAAATTCAGAATTTCAGAATCCTTCCACATTGTCACTTATTCTTCTTCTTGGAATCTTATATTCTTCTCATTTCCGCATCTCCCTCCCCTTTATTCATTTTTCTTTTTCCGCCTAATCTTATATTTTTATACCTTTTCATCATTAAAAGAATTACTTGATTATAGGAAAATATAGGTGAGGAATAAAGTATATAAATTCCTGACATAAGATTAAATGTAGATTATTTTCAGAAATTATTTCTTCTAGAATATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAATTTTGATAAGGAGATTGGAACTTTTTTAAAACTGATTTTCAATAAATTCTAAATTCTATGATTTCCAAAAATTTTTAATTTTCGAACAATTCAGAATTTTGGAATCTCATTCTTTTCTAAAATTACGAAATTGTGAAAAAAACACGAAATTCGGGATTTCTAGAGACTTTTAAAGGAGGCCAGGCACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGTT</canonical>
            <polymorphic>AGAATCTCAAAATATTCGAAAATTTCAAAAATTACCGGAAATTGAAAGATTTCCTAAAATTCAAAGTTTTTGAATTTTGAATTACTAAAATTTGAATTCTTGTTCATTTTCAGAATCATCCAAATAATCTGTCTGTGTGTCTGTTTTTCCAAAAATAGTAAATGTTTCCCATTATTCTTGATCTCTTATGTTTAATCTTTTTTTAATGAATCCTTCGTAATATCTCCTTCACCAAATTAGAAGGACCTCGTGGGAAAAAGGGCCGGACTTCTAAAATGGGCGTGGCCTATTTAACCGCATTTTGTATTTTACTGTCAGTGCACTGACTTTAGCAGTTTTTTGCAAAATTTTCTAGAATTTTAAAATTCAAAAATTGTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTTGTTCTCCGCAACTTGCGATTTTTCTGAAAATTCAGAATTTCAGAATCCTTCCACATTGTCACTTATTCTTCTTCTTGGAATCWTATATTCTTCTCATTTCCGCATCTCCCTCCCCTTTATTCATTTTTCTTTTTCCGCCTAATCTTATATTTTTATACCTTTTCATCATTAAAAGAATTACTTGATTATAGGAAAATATAGGTGAGGAATAAAGTATATAAATTCCTGACATAAGATTAAATGTAGATTATTTTCAGAAATTATTTCTTCTAGAATATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAATTTTGATAAGGAGATTGGAACTTTTTTAAAACTGATTTTCAATAAATTCTAAATTCTATGATTTCCAAAAATTTTTAATTTTCGAACAATTCAGAATTTTGGAATCTCATTCTTTTCTAAAATTACGAAATTGTGAAAAAAACACGAAATTCGGGATTTCTAGAGACTTTTAAAGGAGGCCAGGCACCAAAAAAAAAGTTTTCCTGATATTTTGCATAGAGAACCCCCATGAGGGGTTGAACTCATGACAGGCAGCTCAGGGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTATTCTGAGTCGTTCATCCTAC</pcr_primer_p1>
		<pcr_primer_p2>CCTCACCTATATTTTCCTATAATCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTTGTTCTCCGCAACTTGCGATTTTTCTGAAAATTCAGAATTTCAGAATCCTTCCACATTGTCACTTATTCTTCTTCTTGGAATCTTATATTCTTCTCATTTCCGCATCTCCCTCCCCTTTATTCATTTTTCTTTTTCCGCCTAATCTTATATTTTTATACCTTTTCATCATTAAAAGAATTACTTGATTATAGGAAAATATAGGTGAGG</canonical_amplicon>
		<polymorphic_amplicon>GTATTCTGAGTCGTTCATCCTACTCCTTCCTTTCTTTCATTTGTTCTCCGCAACTTGCGATTTTTCTGAAAATTCAGAATTTCAGAATCCTTCCACATTGTCACTTATTCTTCTTCTTGGAATCWTATATTCTTCTCATTTCCGCATCTCCCTCCCCTTTATTCATTTTTCTTTTTCCGCCTAATCTTATATTTTTATACCTTTTCATCATTAAAAGAATTACTTGATTATAGGAAAATATAGGTGAGG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39688</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>178252</contig_pos>
        <strand></strand>
        <context>TGAATTTTTT[C/T]ATTAAATTAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GCAATTTAAAGCAAATTTTCAAAATTTTGAAGCGAAAATTTGAATTTTTT</left_flank>
        <right_flank>ATTAAATTAAATTAGACAATTCCTCGTATTGCTTTTTGTTTCAATTTCTT</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAGCTCAAAACTCCATAATAATTGGTCTAAAATGCTCATTTTTCCTGGAATTTTCAGCTGAAAATTTTCCAAATTTTGACCTATTTTCTGAAGAAAAACCAGCCAATTTTGCTGATTTTTAGTTCATTTTTCTGGAATTTTCAGCTGAAAATCTGCCAATCTTGGCCTGAAACCTACTTATAGTTAAGCTCATTGACAAGATCCCGTCCATATTGACACAGCTCTCCCGTCGTCAATTTGTTCAGATCCGTCTCCTTGTGACGTGGCGATTCTCGAGGAATCGTCAGTTGATTGGCAAACAGTGACGTGGCTTCCTGCAAGAAAATCGGGCTGAAAATGACTGAAAATGGCTGAAAATCCGTTGAAAATTGTCAAAAATTAATCTGAAATCGCTCAAAAAATTGTGTCTTATTTGTCGAATTTTTGGAACTTTGAGAGCATTTTCAGAGCAATTTAAAGCAAATTTTCAAAATTTTGAAGCGAAAATTTGAATTTTTTCATTAAATTAAATTAGACAATTCCTCGTATTGCTTTTTGTTTCAATTTCTTGAACAGGAGTTAATATTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCGGCGAGAAAAACGCATCGAAAAATACGTTGAAAGCCCTTAGGGACGAGCTTTATTCTAGGCCGCCCGGTGAGTAAAAGCGCGCGAATTCAAACTTTTACAATTTTTTCGCTCGTTCTCACTGTTTTTTTCGGTTTTTTCAAGAGTTTTCTAGGTTTTTGTCAATTTTTCTTCCAGATACATCGGAAAATTTGAAAAAACAGTGAAAACGAGCGAAAAAATTGTTTAAAAGTTTGAATTCGCGCGCTTTTACTTACCGGGCGGCCTAGAAAAAAGCTCGTCCCTAAGGGCTTTCAGCGTATTTTTCGATGCGTTTTTCTCGCCGAAGAAATTTTT</canonical>
            <polymorphic>TCAGCTCAAAACTCCATAATAATTGGTCTAAAATGCTCATTTTTCCTGGAATTTTCAGCTGAAAATTTTCCAAATTTTGACCTATTTTCTGAAGAAAAACCAGCCAATTTTGCTGATTTTTAGTTCATTTTTCTGGAATTTTCAGCTGAAAATCTGCCAATCTTGGCCTGAAACCTACTTATAGTTAAGCTCATTGACAAGATCCCGTCCATATTGACACAGCTCTCCCGTCGTCAATTTGTTCAGATCCGTCTCCTTGTGACGTGGCGATTCTCGAGGAATCGTCAGTTGATTGGCAAACAGTGACGTGGCTTCCTGCAAGAAAATCGGGCTGAAAATGACTGAAAATGGCTGAAAATCCGTTGAAAATTGTCAAAAATTAATCTGAAATCGCTCAAAAAATTGTGTCTTATTTGTCGAATTTTTGGAACTTTGAGAGCATTTTCAGAGCAATTTAAAGCAAATTTTCAAAATTTTGAAGCGAAAATTTGAATTTTTTYATTAAATTAAATTAGACAATTCCTCGTATTGCTTTTTGTTTCAATTTCTTGAACAGGAGTTAATATTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCGGCGAGAAAAACGCATCGAAAAATACGTTGAAAGCCCTTAGGGACGAGCTTTATTCTAGGCCGCCCGGTGAGTAAAAGCGCGCGAATTCAAACTTTTACAATTTTTTCGCTCGTTCTCACTGTTTTTTTCGGTTTTTTCAAGAGTTTTCTAGGTTTTTGTCAATTTTTCTTCCAGATACATCGGAAAATTTGAAAAAACAGTGAAAACGAGCGAAAAAATTGTTTAAAAGTTTGAATTCGCGCGCTTTTACTTACCGGGCGGCCTAGAAAAAAGCTCGTCCCTAAGGGCTTTCAGCGTATTTTTCGATGCGTTTTTCTCGCCGAAGAAATTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>430 354 151 65</canonical_bands>
                <polymorphic_bands>581 354 65</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GAGGAATCGTCAGTTGATTG</pcr_primer_p1>
		<pcr_primer_p2>GTTCAAGAAATTGAAACAAAAAG</pcr_primer_p2>
		<pcr_amplicon_size>279</pcr_amplicon_size>
		<canonical_amplicon>GAGGAATCGTCAGTTGATTGGCAAACAGTGACGTGGCTTCCTGCAAGAAAATCGGGCTGAAAATGACTGAAAATGGCTGAAAATCCGTTGAAAATTGTCAAAAATTAATCTGAAATCGCTCAAAAAATTGTGTCTTATTTGTCGAATTTTTGGAACTTTGAGAGCATTTTCAGAGCAATTTAAAGCAAATTTTCAAAATTTTGAAGCGAAAATTTGAATTTTTTCATTAAATTAAATTAGACAATTCCTCGTATTGCTTTTTGTTTCAATTTCTTGAAC</canonical_amplicon>
		<polymorphic_amplicon>GAGGAATCGTCAGTTGATTGGCAAACAGTGACGTGGCTTCCTGCAAGAAAATCGGGCTGAAAATGACTGAAAATGGCTGAAAATCCGTTGAAAATTGTCAAAAATTAATCTGAAATCGCTCAAAAAATTGTGTCTTATTTGTCGAATTTTTGGAACTTTGAGAGCATTTTCAGAGCAATTTAAAGCAAATTTTCAAAATTTTGAAGCGAAAATTTGAATTTTTTYATTAAATTAAATTAGACAATTCCTCGTATTGCTTTTTGTTTCAATTTCTTGAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39689</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>178278</contig_pos>
        <strand>+</strand>
        <context>ACAATTCCTC[A/G]TATTGCTTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGAAGCGAAAATTTGAATTTTTTCATTAAATTAAATTAGACAATTCCTC</left_flank>
        <right_flank>TATTGCTTTTTGTTTCAATTTCTTGAACAGGAGTTAATATTAAAGGTGGT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTAAAATGCTCATTTTTCCTGGAATTTTCAGCTGAAAATTTTCCAAATTTTGACCTATTTTCTGAAGAAAAACCAGCCAATTTTGCTGATTTTTAGTTCATTTTTCTGGAATTTTCAGCTGAAAATCTGCCAATCTTGGCCTGAAACCTACTTATAGTTAAGCTCATTGACAAGATCCCGTCCATATTGACACAGCTCTCCCGTCGTCAATTTGTTCAGATCCGTCTCCTTGTGACGTGGCGATTCTCGAGGAATCGTCAGTTGATTGGCAAACAGTGACGTGGCTTCCTGCAAGAAAATCGGGCTGAAAATGACTGAAAATGGCTGAAAATCCGTTGAAAATTGTCAAAAATTAATCTGAAATCGCTCAAAAAATTGTGTCTTATTTGTCGAATTTTTGGAACTTTGAGAGCATTTTCAGAGCAATTTAAAGCAAATTTTCAAAATTTTGAAGCGAAAATTTGAATTTTTTCATTAAATTAAATTAGACAATTCCTCGTATTGCTTTTTGTTTCAATTTCTTGAACAGGAGTTAATATTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCGGCGAGAAAAACGCATCGAAAAATACGTTGAAAGCCCTTAGGGACGAGCTTTATTCTAGGCCGCCCGGTGAGTAAAAGCGCGCGAATTCAAACTTTTACAATTTTTTCGCTCGTTCTCACTGTTTTTTTCGGTTTTTTCAAGAGTTTTCTAGGTTTTTGTCAATTTTTCTTCCAGATACATCGGAAAATTTGAAAAAACAGTGAAAACGAGCGAAAAAATTGTTTAAAAGTTTGAATTCGCGCGCTTTTACTTACCGGGCGGCCTAGAAAAAAGCTCGTCCCTAAGGGCTTTCAGCGTATTTTTCGATGCGTTTTTCTCGCCGAAGAAATTTTTTTTTTGAATTTTTTCTTTATTTTTAT</canonical>
            <polymorphic>TCTAAAATGCTCATTTTTCCTGGAATTTTCAGCTGAAAATTTTCCAAATTTTGACCTATTTTCTGAAGAAAAACCAGCCAATTTTGCTGATTTTTAGTTCATTTTTCTGGAATTTTCAGCTGAAAATCTGCCAATCTTGGCCTGAAACCTACTTATAGTTAAGCTCATTGACAAGATCCCGTCCATATTGACACAGCTCTCCCGTCGTCAATTTGTTCAGATCCGTCTCCTTGTGACGTGGCGATTCTCGAGGAATCGTCAGTTGATTGGCAAACAGTGACGTGGCTTCCTGCAAGAAAATCGGGCTGAAAATGACTGAAAATGGCTGAAAATCCGTTGAAAATTGTCAAAAATTAATCTGAAATCGCTCAAAAAATTGTGTCTTATTTGTCGAATTTTTGGAACTTTGAGAGCATTTTCAGAGCAATTTAAAGCAAATTTTCAAAATTTTGAAGCGAAAATTTGAATTTTTTCATTAAATTAAATTAGACAATTCCTCRTATTGCTTTTTGTTTCAATTTCTTGAACAGGAGTTAATATTAAAGGTGGTGTACGGTGAAATTTTTTATTGCATCAAAATGTGCAGAAATGCATGTAGATTGACATAAAAATAAAGAAAAAATTCAAAAAAAATTCCTTCGGCGAGAAAAACGCATCGAAAAATACGTTGAAAGCCCTTAGGGACGAGCTTTATTCTAGGCCGCCCGGTGAGTAAAAGCGCGCGAATTCAAACTTTTACAATTTTTTCGCTCGTTCTCACTGTTTTTTTCGGTTTTTTCAAGAGTTTTCTAGGTTTTTGTCAATTTTTCTTCCAGATACATCGGAAAATTTGAAAAAACAGTGAAAACGAGCGAAAAAATTGTTTAAAAGTTTGAATTCGCGCGCTTTTACTTACCGGGCGGCCTAGAAAAAAGCTCGTCCCTAAGGGCTTTCAGCGTATTTTTCGATGCGTTTTTCTCGCCGAAGAAATTTTTTTTTTGAATTTTTTCTTTATTTTTAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTTTGAAGCGAAAATTTGA</pcr_primer_p1>
		<pcr_primer_p2>GGAAGAAATATTTTAAAGGTGGT</pcr_primer_p2>
		<pcr_amplicon_size>613</pcr_amplicon_size>
		<canonical_amplicon>ATTTTGAAGCGAAAATTTGAATTTTTTCATTAAATTAAATTAGACAATTCCTCGTATTGCTTTTTGTTTCAATTTC</canonical_amplicon>
		<polymorphic_amplicon>ATTTTGAAGCGAAAATTTGAATTTTTTCATTAAATTAAATTAGACAATTCCTCRTATTGCTTTTTGTTTCAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39695</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>227373</contig_pos>
        <strand></strand>
        <context>TGAAAAAGTT[T/C]CAGATTTCCG</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>AATTCAGTGAGTTTCGCCCCTAGAATTTCATTAAAACCACTGAAAAAGTT</left_flank>
        <right_flank>CAGATTTCCGAGAAAATCGTCCGCCACAGAATACGTTGGACAATCCGGAT</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAAAATGAAGTCAACATTTGCTGAAAAATGGTTTAAAATGCCTGAAAAATGGCTTTAAAATGCCTGAAAATGGCTTTAAAATATCTGAAAAATGGCTTAAAGTGCCTGAAAATGGCTCAAAAATGCCAAAAAATTGAATGAAATGCCTGAGAAATGGCCTAAAATGAATGAAAAATGGCTTAAAAATGACAAAAATCGATTAAAATGGCGAAAATTAGCTAAAAATGAGCTGGAAATAGGACCTAAACGCATTAAAAATGCTCAAAAATCCCGAAAAATCGATTAAAATGCCTGAAAAATAGCCTAAAAATGGAAAAAATGACGAAAATTAGCTGAAAATGCGTCTTAATCTGCTGAAAAACGTCACAAACCCTATATTTCCTTACAGAAATGGAAACGGATTTCATGCAAACCTATAGTAAAGTGGCTCAATTTCATCATGCGTCAAAATTCAGTGAGTTTCGCCCCTAGAATTTCATTAAAACCACTGAAAAAGTTTCAGATTTCCGAGAAAATCGTCCGCCACAGAATACGTTGGACAATCCGGATGTCAGGAAAATTGTGAGTTTTTTATGAGCTGACATTGGTTGAAATTGGCTAGAATCAGCTTAAAACTGGGCTGAAAATAAATCAGAGTATGCTAAAAAATAACCTGAAAAATAGCTTAAAATGAGGCTAAAATTGGCCTAAAATTGCTAAGAATAGGCTTTAAAAAGGCTCGTTAATTCGTTAGAAACATCTGAAATTATGGCTGAAATTTTATAAAAAACAACATGTTAGAACAACCTGAAAATCGAGTTAATTACGCTTAAAATAGGTGAAAAACGGCGGAAATTTACCTGAAAAATTCCGAAAATATCGAAATTTTGGCTGAAAATCGCTGGAAAATTGCCTAAAAATATACTGAGAATCCCAAATTTTCCAGGAACGGACACGAGACGCTCGTAGCCACAGCCCGATGGTTCATCCGGCCGATTCTACAGTATCCAGTACCAATGG</canonical>
            <polymorphic>TGAAAATGAAGTCAACATTTGCTGAAAAATGGTTTAAAATGCCTGAAAAATGGCTTTAAAATGCCTGAAAATGGCTTTAAAATATCTGAAAAATGGCTTAAAGTGCCTGAAAATGGCTCAAAAATGCCAAAAAATTGAATGAAATGCCTGAGAAATGGCCTAAAATGAATGAAAAATGGCTTAAAAATGACAAAAATCGATTAAAATGGCGAAAATTAGCTAAAAATGAGCTGGAAATAGGACCTAAACGCATTAAAAATGCTCAAAAATCCCGAAAAATCGATTAAAATGCCTGAAAAATAGCCTAAAAATGGAAAAAATGACGAAAATTAGCTGAAAATGCGTCTTAATCTGCTGAAAAACGTCACAAACCCTATATTTCCTTACAGAAATGGAAACGGATTTCATGCAAACCTATAGTAAAGTGGCTCAATTTCATCATGCGTCAAAATTCAGTGAGTTTCGCCCCTAGAATTTCATTAAAACCACTGAAAAAGTTYCAGATTTCCGAGAAAATCGTCCGCCACAGAATACGTTGGACAATCCGGATGTCAGGAAAATTGTGAGTTTTTTATGAGCTGACATTGGTTGAAATTGGCTAGAATCAGCTTAAAACTGGGCTGAAAATAAATCAGAGTATGCTAAAAAATAACCTGAAAAATAGCTTAAAATGAGGCTAAAATTGGCCTAAAATTGCTAAGAATAGGCTTTAAAAAGGCTCGTTAATTCGTTAGAAACATCTGAAATTATGGCTGAAATTTTATAAAAAACAACATGTTAGAACAACCTGAAAATCGAGTTAATTACGCTTAAAATAGGTGAAAAACGGCGGAAATTTACCTGAAAAATTCCGAAAATATCGAAATTTTGGCTGAAAATCGCTGGAAAATTGCCTAAAAATATACTGAGAATCCCAAATTTTCCAGGAACGGACACGAGACGCTCGTAGCCACAGCCCGATGGTTCATCCGGCCGATTCTACAGTATCCAGTACCAATGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>415 148 125 110 108 87 7</canonical_bands>
                <polymorphic_bands>422 148 125 110 108 87</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACAGAAATGGAAACGGATTT</pcr_primer_p1>
		<pcr_primer_p2>AAAAACTCACAATTTTCCTGAC</pcr_primer_p2>
		<pcr_amplicon_size>188</pcr_amplicon_size>
		<canonical_amplicon>TACAGAAATGGAAACGGATTTCATGCAAACCTATAGTAAAGTGGCTCAATTTCATCATGCGTCAAAATTCAGTGAGTTTCGCCCCTAGAATTTCATTAAAACCACTGAAAAAGTTTCAGATTTCCGAGAAAATCGTCCGCCACAGAATACGTTGGACAATCCGGATGTCAGGAAAATTGTGAGTTTTT</canonical_amplicon>
		<polymorphic_amplicon>TACAGAAATGGAAACGGATTTCATGCAAACCTATAGTAAAGTGGCTCAATTTCATCATGCGTCAAAATTCAGTGAGTTTCGCCCCTAGAATTTCATTAAAACCACTGAAAAAGTTYCAGATTTCCGAGAAAATCGTCCGCCACAGAATACGTTGGACAATCCGGATGTCAGGAAAATTGTGAGTTTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39696</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>228084</contig_pos>
        <strand>+</strand>
        <context>GAGAATTTTG[A/G]GTGAAAAATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AATTTCCAGCAAAAAAATACTGCAAAAAGCCGGAAAATTTGAGAATTTTG</left_flank>
        <right_flank>GTGAAAAATGGTCAAAAATTACCGAAAAACGCTTGAAAATATGATTTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAGGCTCGTTAATTCGTTAGAAACATCTGAAATTATGGCTGAAATTTTATAAAAAACAACATGTTAGAACAACCTGAAAATCGAGTTAATTACGCTTAAAATAGGTGAAAAACGGCGGAAATTTACCTGAAAAATTCCGAAAATATCGAAATTTTGGCTGAAAATCGCTGGAAAATTGCCTAAAAATATACTGAGAATCCCAAATTTTCCAGGAACGGACACGAGACGCTCGTAGCCACAGCCCGATGGTTCATCCGGCCGATTCTACAGTATCCAGTACCAATGGACGTCCACGTGGATATGTGCCAAAGGATGAGCTCACTGTGGAGAGGTAATGAACGAACTTGCAAGAAAAAATACCTAAAAATCAAGATTTTGAGTGAAAAATGGCTATAAATGACTGAAAAAAAGCTAGAAAAAAGTGATTTTTGGGGCATTTTTAGACGAATTTCCAGCAAAAAAATACTGCAAAAAGCCGGAAAATTTGAGAATTTTGAGTGAAAAATGGTCAAAAATTACCGAAAAACGCTTGAAAATATGATTTTTGAGTCATTTTCGACGAATTTTCAACAAAAATTACCTAATTAGGCCCCTAATTTACCTTTTAAAAATTACCTAATTAGGCCCCTAATTATCTCCTAATTATGATAATTTGATTATCATAGACTCAATAAGGAGCGAGTGATAGAAGAGGAGCGTCGAAAACGGGACCACGATCGGATAACAGGAAGAATGGATCATTCGACTGGGTGAGTGACCTAGTTTTTAGCGATTTCTAGCAATTTCTAGGTCAGATTTTGCTGGAAAAAATGGCTGAAAATCGATAAAACACCGATAGAAAAATCTTGAATTTAAAGTGGAAATTTGACAAAATTTGCAATTTTCTAGGCTAGATTTTTGCTTAAAAATCTGAAAATTGAAGAAAAATCTGGCTGAAAATAGAGATTTTCAGATTTTTTTGGACCAATCGGACGTTTTAGAACCGGTCATTTCGCAA</canonical>
            <polymorphic>AAAAAGGCTCGTTAATTCGTTAGAAACATCTGAAATTATGGCTGAAATTTTATAAAAAACAACATGTTAGAACAACCTGAAAATCGAGTTAATTACGCTTAAAATAGGTGAAAAACGGCGGAAATTTACCTGAAAAATTCCGAAAATATCGAAATTTTGGCTGAAAATCGCTGGAAAATTGCCTAAAAATATACTGAGAATCCCAAATTTTCCAGGAACGGACACGAGACGCTCGTAGCCACAGCCCGATGGTTCATCCGGCCGATTCTACAGTATCCAGTACCAATGGACGTCCACGTGGATATGTGCCAAAGGATGAGCTCACTGTGGAGAGGTAATGAACGAACTTGCAAGAAAAAATACCTAAAAATCAAGATTTTGAGTGAAAAATGGCTATAAATGACTGAAAAAAAGCTAGAAAAAAGTGATTTTTGGGGCATTTTTAGACGAATTTCCAGCAAAAAAATACTGCAAAAAGCCGGAAAATTTGAGAATTTTGRGTGAAAAATGGTCAAAAATTACCGAAAAACGCTTGAAAATATGATTTTTGAGTCATTTTCGACGAATTTTCAACAAAAATTACCTAATTAGGCCCCTAATTTACCTTTTAAAAATTACCTAATTAGGCCCCTAATTATCTCCTAATTATGATAATTTGATTATCATAGACTCAATAAGGAGCGAGTGATAGAAGAGGAGCGTCGAAAACGGGACCACGATCGGATAACAGGAAGAATGGATCATTCGACTGGGTGAGTGACCTAGTTTTTAGCGATTTCTAGCAATTTCTAGGTCAGATTTTGCTGGAAAAAATGGCTGAAAATCGATAAAACACCGATAGAAAAATCTTGAATTTAAAGTGGAAATTTGACAAAATTTGCAATTTTCTAGGCTAGATTTTTGCTTAAAAATCTGAAAATTGAAGAAAAATCTGGCTGAAAATAGAGATTTTCAGATTTTTTTGGACCAATCGGACGTTTTAGAACCGGTCATTTCGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAAGATTTTGAGTGAAAAATG</pcr_primer_p1>
		<pcr_primer_p2>AGGTAATTTTTAAAAGGTAAATTAGG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATCAAGATTTTGAGTGAAAAATGGCTATAAATGACTGAAAAAAAGCTAGAAAAAAGTGATTTTTGGGGCATTTTTAGACGAATTTCCAGCAAAAAAATACTGCAAAAAGCCGGAAAATTTGAGAATTTTGAGTGAAAAATGGTCAAAAATTACCGAAAAACGCTTGAAAATATGATTTTTGAGTCATTTTCGACGAATTTTCAACAAAAATTACCTAATTAGGCCCCTAATTTACCTTTTAAAAATTACCT</canonical_amplicon>
		<polymorphic_amplicon>ATCAAGATTTTGAGTGAAAAATGGCTATAAATGACTGAAAAAAAGCTAGAAAAAAGTGATTTTTGGGGCATTTTTAGACGAATTTCCAGCAAAAAAATACTGCAAAAAGCCGGAAAATTTGAGAATTTTGRGTGAAAAATGGTCAAAAATTACCGAAAAACGCTTGAAAATATGATTTTTGAGTCATTTTCGACGAATTTTCAACAAAAATTACCTAATTAGGCCCCTAATTTACCTTTTAAAAATTACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39697</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>228118</contig_pos>
        <strand>+</strand>
        <context>GAAAAACGCT[C/T]GAAAATATGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATTTGAGAATTTTGAGTGAAAAATGGTCAAAAATTACCGAAAAACGCT</left_flank>
        <right_flank>GAAAATATGATTTTTGAGTCATTTTCGACGAATTTTCAACAAAAATTACC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTATGGCTGAAATTTTATAAAAAACAACATGTTAGAACAACCTGAAAATCGAGTTAATTACGCTTAAAATAGGTGAAAAACGGCGGAAATTTACCTGAAAAATTCCGAAAATATCGAAATTTTGGCTGAAAATCGCTGGAAAATTGCCTAAAAATATACTGAGAATCCCAAATTTTCCAGGAACGGACACGAGACGCTCGTAGCCACAGCCCGATGGTTCATCCGGCCGATTCTACAGTATCCAGTACCAATGGACGTCCACGTGGATATGTGCCAAAGGATGAGCTCACTGTGGAGAGGTAATGAACGAACTTGCAAGAAAAAATACCTAAAAATCAAGATTTTGAGTGAAAAATGGCTATAAATGACTGAAAAAAAGCTAGAAAAAAGTGATTTTTGGGGCATTTTTAGACGAATTTCCAGCAAAAAAATACTGCAAAAAGCCGGAAAATTTGAGAATTTTGAGTGAAAAATGGTCAAAAATTACCGAAAAACGCTTGAAAATATGATTTTTGAGTCATTTTCGACGAATTTTCAACAAAAATTACCTAATTAGGCCCCTAATTTACCTTTTAAAAATTACCTAATTAGGCCCCTAATTATCTCCTAATTATGATAATTTGATTATCATAGACTCAATAAGGAGCGAGTGATAGAAGAGGAGCGTCGAAAACGGGACCACGATCGGATAACAGGAAGAATGGATCATTCGACTGGGTGAGTGACCTAGTTTTTAGCGATTTCTAGCAATTTCTAGGTCAGATTTTGCTGGAAAAAATGGCTGAAAATCGATAAAACACCGATAGAAAAATCTTGAATTTAAAGTGGAAATTTGACAAAATTTGCAATTTTCTAGGCTAGATTTTTGCTTAAAAATCTGAAAATTGAAGAAAAATCTGGCTGAAAATAGAGATTTTCAGATTTTTTTGGACCAATCGGACGTTTTAGAACCGGTCATTTCGCAACTGTTAGGAAACTAGAAATTCTGAAAAAATATTA</canonical>
            <polymorphic>ATTATGGCTGAAATTTTATAAAAAACAACATGTTAGAACAACCTGAAAATCGAGTTAATTACGCTTAAAATAGGTGAAAAACGGCGGAAATTTACCTGAAAAATTCCGAAAATATCGAAATTTTGGCTGAAAATCGCTGGAAAATTGCCTAAAAATATACTGAGAATCCCAAATTTTCCAGGAACGGACACGAGACGCTCGTAGCCACAGCCCGATGGTTCATCCGGCCGATTCTACAGTATCCAGTACCAATGGACGTCCACGTGGATATGTGCCAAAGGATGAGCTCACTGTGGAGAGGTAATGAACGAACTTGCAAGAAAAAATACCTAAAAATCAAGATTTTGAGTGAAAAATGGCTATAAATGACTGAAAAAAAGCTAGAAAAAAGTGATTTTTGGGGCATTTTTAGACGAATTTCCAGCAAAAAAATACTGCAAAAAGCCGGAAAATTTGAGAATTTTGAGTGAAAAATGGTCAAAAATTACCGAAAAACGCTYGAAAATATGATTTTTGAGTCATTTTCGACGAATTTTCAACAAAAATTACCTAATTAGGCCCCTAATTTACCTTTTAAAAATTACCTAATTAGGCCCCTAATTATCTCCTAATTATGATAATTTGATTATCATAGACTCAATAAGGAGCGAGTGATAGAAGAGGAGCGTCGAAAACGGGACCACGATCGGATAACAGGAAGAATGGATCATTCGACTGGGTGAGTGACCTAGTTTTTAGCGATTTCTAGCAATTTCTAGGTCAGATTTTGCTGGAAAAAATGGCTGAAAATCGATAAAACACCGATAGAAAAATCTTGAATTTAAAGTGGAAATTTGACAAAATTTGCAATTTTCTAGGCTAGATTTTTGCTTAAAAATCTGAAAATTGAAGAAAAATCTGGCTGAAAATAGAGATTTTCAGATTTTTTTGGACCAATCGGACGTTTTAGAACCGGTCATTTCGCAACTGTTAGGAAACTAGAAATTCTGAAAAAATATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCAAGATTTTGAGTGAAAAATG</pcr_primer_p1>
		<pcr_primer_p2>AGGTAATTTTTAAAAGGTAAATTAGG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>ATCAAGATTTTGAGTGAAAAATGGCTATAAATGACTGAAAAAAAGCTAGAAAAAAGTGATTTTTGGGGCATTTTTAGACGAATTTCCAGCAAAAAAATACTGCAAAAAGCCGGAAAATTTGAGAATTTTGAGTGAAAAATGGTCAAAAATTACCGAAAAACGCTTGAAAATATGATTTTTGAGTCATTTTCGACGAATTTTCAACAAAAATTACCTAATTAGGCCCCTAATTTACCTTTTAAAAATTACCT</canonical_amplicon>
		<polymorphic_amplicon>ATCAAGATTTTGAGTGAAAAATGGCTATAAATGACTGAAAAAAAGCTAGAAAAAAGTGATTTTTGGGGCATTTTTAGACGAATTTCCAGCAAAAAAATACTGCAAAAAGCCGGAAAATTTGAGAATTTTGAGTGAAAAATGGTCAAAAATTACCGAAAAACGCTYGAAAATATGATTTTTGAGTCATTTTCGACGAATTTTCAACAAAAATTACCTAATTAGGCCCCTAATTTACCTTTTAAAAATTACCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39698</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>228144</contig_pos>
        <strand>+</strand>
        <context>GAGTCATTTT[C/T]GACGAATTTW</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGTCAAAAATTACCGAAAAACGCTTGAAAATATGATTTTTGAGTCATTTT</left_flank>
        <right_flank>GACGAATTTTCAACAAAAATTACCTAATTAGGCCCCTAATTTACCTTTTA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACATGTTAGAACAACCTGAAAATCGAGTTAATTACGCTTAAAATAGGTGAAAAACGGCGGAAATTTACCTGAAAAATTCCGAAAATATCGAAATTTTGGCTGAAAATCGCTGGAAAATTGCCTAAAAATATACTGAGAATCCCAAATTTTCCAGGAACGGACACGAGACGCTCGTAGCCACAGCCCGATGGTTCATCCGGCCGATTCTACAGTATCCAGTACCAATGGACGTCCACGTGGATATGTGCCAAAGGATGAGCTCACTGTGGAGAGGTAATGAACGAACTTGCAAGAAAAAATACCTAAAAATCAAGATTTTGAGTGAAAAATGGCTATAAATGACTGAAAAAAAGCTAGAAAAAAGTGATTTTTGGGGCATTTTTAGACGAATTTCCAGCAAAAAAATACTGCAAAAAGCCGGAAAATTTGAGAATTTTGAGTGAAAAATGGTCAAAAATTACCGAAAAACGCTTGAAAATATGATTTTTGAGTCATTTTCGACGAATTTTCAACAAAAATTACCTAATTAGGCCCCTAATTTACCTTTTAAAAATTACCTAATTAGGCCCCTAATTATCTCCTAATTATGATAATTTGATTATCATAGACTCAATAAGGAGCGAGTGATAGAAGAGGAGCGTCGAAAACGGGACCACGATCGGATAACAGGAAGAATGGATCATTCGACTGGGTGAGTGACCTAGTTTTTAGCGATTTCTAGCAATTTCTAGGTCAGATTTTGCTGGAAAAAATGGCTGAAAATCGATAAAACACCGATAGAAAAATCTTGAATTTAAAGTGGAAATTTGACAAAATTTGCAATTTTCTAGGCTAGATTTTTGCTTAAAAATCTGAAAATTGAAGAAAAATCTGGCTGAAAATAGAGATTTTCAGATTTTTTTGGACCAATCGGACGTTTTAGAACCGGTCATTTCGCAACTGTTAGGAAACTAGAAATTCTGAAAAAATATTAGAAATCCGAAAAACCCAAAAATCCAC</canonical>
            <polymorphic>AACATGTTAGAACAACCTGAAAATCGAGTTAATTACGCTTAAAATAGGTGAAAAACGGCGGAAATTTACCTGAAAAATTCCGAAAATATCGAAATTTTGGCTGAAAATCGCTGGAAAATTGCCTAAAAATATACTGAGAATCCCAAATTTTCCAGGAACGGACACGAGACGCTCGTAGCCACAGCCCGATGGTTCATCCGGCCGATTCTACAGTATCCAGTACCAATGGACGTCCACGTGGATATGTGCCAAAGGATGAGCTCACTGTGGAGAGGTAATGAACGAACTTGCAAGAAAAAATACCTAAAAATCAAGATTTTGAGTGAAAAATGGCTATAAATGACTGAAAAAAAGCTAGAAAAAAGTGATTTTTGGGGCATTTTTAGACGAATTTCCAGCAAAAAAATACTGCAAAAAGCCGGAAAATTTGAGAATTTTGAGTGAAAAATGGTCAAAAATTACCGAAAAACGCTTGAAAATATGATTTTTGAGTCATTTTYGACGAATTTTCAACAAAAATTACCTAATTAGGCCCCTAATTTACCTTTTAAAAATTACCTAATTAGGCCCCTAATTATCTCCTAATTATGATAATTTGATTATCATAGACTCAATAAGGAGCGAGTGATAGAAGAGGAGCGTCGAAAACGGGACCACGATCGGATAACAGGAAGAATGGATCATTCGACTGGGTGAGTGACCTAGTTTTTAGCGATTTCTAGCAATTTCTAGGTCAGATTTTGCTGGAAAAAATGGCTGAAAATCGATAAAACACCGATAGAAAAATCTTGAATTTAAAGTGGAAATTTGACAAAATTTGCAATTTTCTAGGCTAGATTTTTGCTTAAAAATCTGAAAATTGAAGAAAAATCTGGCTGAAAATAGAGATTTTCAGATTTTTTTGGACCAATCGGACGTTTTAGAACCGGTCATTTCGCAACTGTTAGGAAACTAGAAATTCTGAAAAAATATTAGAAATCCGAAAAACCCAAAAATCCAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>410 235 143 79 65 43 25</canonical_bands>
                <polymorphic_bands>553 235 79 65 43 25</polymorphic_bands>
            </assay>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>504 356 140</canonical_bands>
                <polymorphic_bands>644 356</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAAAAATGGTCAAAAATTACC</pcr_primer_p1>
		<pcr_primer_p2>GAATGATCCATTCTTCCTGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TGAAAAATGGTCAAAAATTACCGAAAAACGCTTGAAAATATGATTTTTGAGTCATTTTCGACGAATTTTCAACAAAAATTACCTAATTAGGCCCCTAATTTACCTTTTAAAAATTACCTAATTAGGCCCCTAATTATCTCCTAATTATGATAATTTGATTATCATAGACTCAATAAGGAGCGAGTGATAGAAGAGGAGCGTCGAAAACGGGACCACGATCGGATAACAGGAAGAATGGATCATTC</canonical_amplicon>
		<polymorphic_amplicon>TGAAAAATGGTCAAAAATTACCGAAAAACGCTTGAAAATATGATTTTTGAGTCATTTTYGACGAATTTTCAACAAAAATTACCTAATTAGGCCCCTAATTTACCTTTTAAAAATTACCTAATTAGGCCCCTAATTATCTCCTAATTATGATAATTTGATTATCATAGACTCAATAAGGAGCGAGTGATAGAAGAGGAGCGTCGAAAACGGGACCACGATCGGATAACAGGAAGAATGGATCATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39699</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>228154</contig_pos>
        <strand>+</strand>
        <context>YGACGAATTT[A/T]CAACAAAAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TACCGAAAAACGCTTGAAAATATGATTTTTGAGTCATTTTCGACGAATTT</left_flank>
        <right_flank>CAACAAAAATTACCTAATTAGGCCCCTAATTTACCTTTTAAAAATTACCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AACAACCTGAAAATCGAGTTAATTACGCTTAAAATAGGTGAAAAACGGCGGAAATTTACCTGAAAAATTCCGAAAATATCGAAATTTTGGCTGAAAATCGCTGGAAAATTGCCTAAAAATATACTGAGAATCCCAAATTTTCCAGGAACGGACACGAGACGCTCGTAGCCACAGCCCGATGGTTCATCCGGCCGATTCTACAGTATCCAGTACCAATGGACGTCCACGTGGATATGTGCCAAAGGATGAGCTCACTGTGGAGAGGTAATGAACGAACTTGCAAGAAAAAATACCTAAAAATCAAGATTTTGAGTGAAAAATGGCTATAAATGACTGAAAAAAAGCTAGAAAAAAGTGATTTTTGGGGCATTTTTAGACGAATTTCCAGCAAAAAAATACTGCAAAAAGCCGGAAAATTTGAGAATTTTGAGTGAAAAATGGTCAAAAATTACCGAAAAACGCTTGAAAATATGATTTTTGAGTCATTTTCGACGAATTTTCAACAAAAATTACCTAATTAGGCCCCTAATTTACCTTTTAAAAATTACCTAATTAGGCCCCTAATTATCTCCTAATTATGATAATTTGATTATCATAGACTCAATAAGGAGCGAGTGATAGAAGAGGAGCGTCGAAAACGGGACCACGATCGGATAACAGGAAGAATGGATCATTCGACTGGGTGAGTGACCTAGTTTTTAGCGATTTCTAGCAATTTCTAGGTCAGATTTTGCTGGAAAAAATGGCTGAAAATCGATAAAACACCGATAGAAAAATCTTGAATTTAAAGTGGAAATTTGACAAAATTTGCAATTTTCTAGGCTAGATTTTTGCTTAAAAATCTGAAAATTGAAGAAAAATCTGGCTGAAAATAGAGATTTTCAGATTTTTTTGGACCAATCGGACGTTTTAGAACCGGTCATTTCGCAACTGTTAGGAAACTAGAAATTCTGAAAAAATATTAGAAATCCGAAAAACCCAAAAATCCACAAAATTCTGA</canonical>
            <polymorphic>AACAACCTGAAAATCGAGTTAATTACGCTTAAAATAGGTGAAAAACGGCGGAAATTTACCTGAAAAATTCCGAAAATATCGAAATTTTGGCTGAAAATCGCTGGAAAATTGCCTAAAAATATACTGAGAATCCCAAATTTTCCAGGAACGGACACGAGACGCTCGTAGCCACAGCCCGATGGTTCATCCGGCCGATTCTACAGTATCCAGTACCAATGGACGTCCACGTGGATATGTGCCAAAGGATGAGCTCACTGTGGAGAGGTAATGAACGAACTTGCAAGAAAAAATACCTAAAAATCAAGATTTTGAGTGAAAAATGGCTATAAATGACTGAAAAAAAGCTAGAAAAAAGTGATTTTTGGGGCATTTTTAGACGAATTTCCAGCAAAAAAATACTGCAAAAAGCCGGAAAATTTGAGAATTTTGAGTGAAAAATGGTCAAAAATTACCGAAAAACGCTTGAAAATATGATTTTTGAGTCATTTTCGACGAATTTWCAACAAAAATTACCTAATTAGGCCCCTAATTTACCTTTTAAAAATTACCTAATTAGGCCCCTAATTATCTCCTAATTATGATAATTTGATTATCATAGACTCAATAAGGAGCGAGTGATAGAAGAGGAGCGTCGAAAACGGGACCACGATCGGATAACAGGAAGAATGGATCATTCGACTGGGTGAGTGACCTAGTTTTTAGCGATTTCTAGCAATTTCTAGGTCAGATTTTGCTGGAAAAAATGGCTGAAAATCGATAAAACACCGATAGAAAAATCTTGAATTTAAAGTGGAAATTTGACAAAATTTGCAATTTTCTAGGCTAGATTTTTGCTTAAAAATCTGAAAATTGAAGAAAAATCTGGCTGAAAATAGAGATTTTCAGATTTTTTTGGACCAATCGGACGTTTTAGAACCGGTCATTTCGCAACTGTTAGGAAACTAGAAATTCTGAAAAAATATTAGAAATCCGAAAAACCCAAAAATCCACAAAATTCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TGAAAAATGGTCAAAAATTACC</pcr_primer_p1>
		<pcr_primer_p2>GAATGATCCATTCTTCCTGTTAT</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>TGAAAAATGGTCAAAAATTACCGAAAAACGCTTGAAAATATGATTTTTGAGTCATTTTCGACGAATTTTCAACAAAAATTACCTAATTAGGCCCCTAATTTACCTTTTAAAAATTACCTAATTAGGCCCCTAATTATCTCCTAATTATGATAATTTGATTATCATAGACTCAATAAGGAGCGAGTGATAGAAGAGGAGCGTCGAAAACGGGACCACGATCGGATAACAGGAAGAATGGATCATTC</canonical_amplicon>
		<polymorphic_amplicon>TGAAAAATGGTCAAAAATTACCGAAAAACGCTTGAAAATATGATTTTTGAGTCATTTTCGACGAATTTWCAACAAAAATTACCTAATTAGGCCCCTAATTTACCTTTTAAAAATTACCTAATTAGGCCCCTAATTATCTCCTAATTATGATAATTTGATTATCATAGACTCAATAAGGAGCGAGTGATAGAAGAGGAGCGTCGAAAACGGGACCACGATCGGATAACAGGAAGAATGGATCATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39700</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>250301</contig_pos>
        <strand>+</strand>
        <context>CCTGTTGTAG[C/T]CCTAAATGCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAATTCAACTACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAG</left_flank>
        <right_flank>CCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTG</right_flank>
        <qual_score>130</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTCCTCCGTTTCTCTCGCTTTATATTATCTGGGGTTCTTGCCATGGAGAATAAGAATCGACACTTGACTTCTTACTCTACAAAAATTGATGCTATCCTTCTTACTCCTACAGGTCGCGGAGTGAAATTCAACATTCAAAAACCCAAGGGACGGGATCTTTTGTGTCTTTGGAAGCGAGGAAACACATTCGTCCTCAGGGGAACAGGCTTATCGATAGCCATGGAGGTTCAAGAAGCTTCTGGAACTTCAGAGGAAATTTGGATCAGTGCTTGCCCATTAGATCCTTACCATCAAAACCTGTTGCCAGAATTACTAGGATCTGAAGTTCAAGTTTTCCAGAGACTTGAAGACACCAAACACATTTTGGAGGCGTTCCCGACGAACGGAACCCCAGCAAAGTTCCTGGACATCTTGCTGGGATCCCAAACTATCAATTGGAGATGTCCTCCTCAATTCAACTACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGG</canonical>
            <polymorphic>GTCCTCCGTTTCTCTCGCTTTATATTATCTGGGGTTCTTGCCATGGAGAATAAGAATCGACACTTGACTTCTTACTCTACAAAAATTGATGCTATCCTTCTTACTCCTACAGGTCGCGGAGTGAAATTCAACATTCAAAAACCCAAGGGACGGGATCTTTTGTGTCTTTGGAAGCGAGGAAACACATTCGTCCTCAGGGGAACAGGCTTATCGATAGCCATGGAGGTTCAAGAAGCTTCTGGAACTTCAGAGGAAATTTGGATCAGTGCTTGCCCATTAGATCCTTACCATCAAAACCTGTTGCCAGAATTACTAGGATCTGAAGTTCAAGTTTTCCAGAGACTTGAAGACACCAAACACATTTTGGAGGCGTTCCCGACGAACGGAACCCCAGCAAAGTTCCTGGACATCTTGCTGGGATCCCAAACTATCAATTGGAGATGTCCTCCTCAATTCAACTACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGYCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNNNNNNGC</site>
                <isoschizomers>
                    <enzyme>BstMWI</enzyme>
                    <enzyme>HpyF10VI</enzyme>
                    <enzyme>MwoI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>250 206 150 134 55 41 37 35 30 19 18 14 11</canonical_bands>
                <polymorphic_bands>250 206 150 134 55 41 37 35 33 30 18 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTCCTCAATTCAACTACTTCTT</pcr_primer_p1>
		<pcr_primer_p2>CTGTAGGATAGGCTTCTTCATT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CCTCCTCAATTCAACTACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAG</canonical_amplicon>
		<polymorphic_amplicon>CCTCCTCAATTCAACTACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGYCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39701</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>250741</contig_pos>
        <strand>+</strand>
        <context>CCCTATCAAA[G/T]MCTCARMGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAA</left_flank>
        <right_flank>CCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTCCTCCTCAATTCAACTACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGA</canonical>
            <polymorphic>ATGTCCTCCTCAATTCAACTACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAAKCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCTACCTTGATCGGAATTTAC</pcr_primer_p1>
		<pcr_primer_p2>CACCTACAAATCCAAATCTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTG</canonical_amplicon>
		<polymorphic_amplicon>GATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAAKCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39702</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>250747</contig_pos>
        <strand>+</strand>
        <context>CAAAKMCTCA[A/G]MGTTCWMWKC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCA</left_flank>
        <right_flank>CGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTCAATTCAACTACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGATCTCCA</canonical>
            <polymorphic>TCCTCAATTCAACTACTTCTTCGCGCTTGTCAACTCCAGCTATCCTGTTGTAGCCCTAAATGCTGGACCTGGCTGTGGGAAGACTTCGATTTTAGTCTCTGCTGCTAACCAATCCAGTAGTGGATTCCACGTGGCGGTTGCTCAATCAAGTCTGTGTGTAGTGAGAATGATTCGGGAGCATTTAAAGTTCCCAGGATGTGCTAGAGCCGTGAGGATTGTAGATCGCAATGAAGAAGCCTATCCTACAGAAATTGATCTACCAACTTTATGGCCAAAGGTATTCAAGGAGTACTTGAAGGAAGTCGAAGGTCAGGAGGTAGATCAAATCGCCCGAAACGTTGTGATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCARCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTGACGCTCTTCAACTGTCACCTTGGAAAACCGATAGTCTTCCGAAGCTCCTCCAGAAGGATTCGGAATTCTTCAAAAGGGTAATTGCTAGATTTCCCTGGTTCCAGCAAATGAATTCTCGACGATTGGCTCCTGATGTATTGAATTGTTGCTCAGAGTTATTCTATGAAGATCGTCTAGCCAATGAAGCCAATGGAACATTCGTCTCAGCGAATTGTGGATTGTTGGCATCATTAGGAATAAGAAGTGGATATGGCATTCAGGTCATAGATTTTGGAATCCAAACAACCTACAAGAACGTTTACTCTCTCAAAGAAGCATACTTGGCTATTGACCTAGCTGATCTATTCCCTCGAAATCTTTCTATTGGAATCCTTTGCTTCTCTAAGAAACAAGCCAGCTTGATCTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>496 245 179 54 26</canonical_bands>
                <polymorphic_bands>741 179 54 26</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCTACCTTGATCGGAATTTAC</pcr_primer_p1>
		<pcr_primer_p2>CACCTACAAATCCAAATCTAGC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>GATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCAGCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTG</canonical_amplicon>
		<polymorphic_amplicon>GATCTACCTTGATCGGAATTTACGCTCCCATAAAGATGCCACAATTTCACTCTCCGACCTCTTCTTCCATATCTACAAGCCCAAAATCTTCTATGGAACCATTGACGCTATTGCCGGATCTCTCTACAATGGGGCTCTTCACCCTATCAAATCCTCARCGTTCAATTCGACGAGGCCAACACTATGAGTCTTCATGAATTCCTCCAAATCGGCGCCAGATGTCCCAACGCTAGATTTGGATTTGTAGGTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39703</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>255046</contig_pos>
        <strand>+</strand>
        <context>AAAAATTTTC[C/T]TCAGCCACCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGAGGAAAATGAGGAAACAGTAAGAATACAAAGACAAGAAAAAATTTTC</left_flank>
        <right_flank>TCAGCCACCATCAACACTCACACTGCTGCGAACTGTGAGCATCCCGTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACCAACATGTAGAAAAATTCGGAGAAATGGAGAAAATTCCGCGAAATTGCGGAGAATGAACCAATCTAGCTGAAATTTCGGAGAAAATCGGAGAAAATTATAGAGAGCATATTCACAAAATTTGGGGTCGCAAAATTAATTTTGAAATTTTGGCTGGGAATTCCANNNNNNNNNNAATAACCCCAATAGTTTTTTCTCAAATTTCGCGGTAATTGATTGGAAAAAAAATGTTAAACATTTTTTTGAATGTTTTATTGCATGTTTGAACCCTTTTCGGAAAAAAAGCGACTTTTGGGCCAAACTCTAGGATTTTTGAATTTTTGTAGGAAAATCACTGAACTTGGGATTGTTATTCTCACACGATGATTGAGGAACATACAAAAAATGAGAAAAACTTCAATTCCACGAAAATTGGGAAAAACTTGGGGAATTGTGAAAAAATGGAAAAAAGAGGAAAATGAGGAAACAGTAAGAATACAAAGACAAGAAAAAATTTTCCTCAGCCACCATCAACACTCACACTGCTGCGAACTGTGAGCATCCCGTTTGCTAATCGCTCCAATTATGTCGTCGTTCTCGTCGACACTTATACATGCCTCTCGCATGTATTCCACCTGTTTAGCATTGTAGCTCGCCAGCTCCACGTGGCATTGTTGTTCTTGGCGGCGCGGTGCCAATGCTGACAGACCCCGTAGCGATGAGAGTTTCTTCATTTTGAAAGGGGAAGGCGGTGGCCTAGAAAAAGTTGGAGGATAGTTAGGCCAGCTATTTTTTCGGCCAGAAAGCGTCAAAATATGGAATATTAATCGCTTGAAAATAACGATTTTTTAACATTGAAGAAAAAAATTTTCAGAAAAACCGGTTTAATAAATTTTGAAAAACCGCGTATTTTAAAAAGAAAGAAATTTTGAGAATCAAAAAAATCACATAAAAAAAGACCACAAAAACTACAAAAATTAAAAAAATAGAGAAAAATTAAGGATTCGCCTTCCGATGGCC</canonical>
            <polymorphic>CACCAACATGTAGAAAAATTCGGAGAAATGGAGAAAATTCCGCGAAATTGCGGAGAATGAACCAATCTAGCTGAAATTTCGGAGAAAATCGGAGAAAATTATAGAGAGCATATTCACAAAATTTGGGGTCGCAAAATTAATTTTGAAATTTTGGCTGGGAATTCCANNNNNNNNNNAATAACCCCAATAGTTTTTTCTCAAATTTCGCGGTAATTGATTGGAAAAAAAATGTTAAACATTTTTTTGAATGTTTTATTGCATGTTTGAACCCTTTTCGGAAAAAAAGCGACTTTTGGGCCAAACTCTAGGATTTTTGAATTTTTGTAGGAAAATCACTGAACTTGGGATTGTTATTCTCACACGATGATTGAGGAACATACAAAAAATGAGAAAAACTTCAATTCCACGAAAATTGGGAAAAACTTGGGGAATTGTGAAAAAATGGAAAAAAGAGGAAAATGAGGAAACAGTAAGAATACAAAGACAAGAAAAAATTTTCYTCAGCCACCATCAACACTCACACTGCTGCGAACTGTGAGCATCCCGTTTGCTAATCGCTCCAATTATGTCGTCGTTCTCGTCGACACTTATACATGCCTCTCGCATGTATTCCACCTGTTTAGCATTGTAGCTCGCCAGCTCCACGTGGCATTGTTGTTCTTGGCGGCGCGGTGCCAATGCTGACAGACCCCGTAGCGATGAGAGTTTCTTCATTTTGAAAGGGGAAGGCGGTGGCCTAGAAAAAGTTGGAGGATAGTTAGGCCAGCTATTTTTTCGGCCAGAAAGCGTCAAAATATGGAATATTAATCGCTTGAAAATAACGATTTTTTAACATTGAAGAAAAAAATTTTCAGAAAAACCGGTTTAATAAATTTTGAAAAACCGCGTATTTTAAAAAGAAAGAAATTTTGAGAATCAAAAAAATCACATAAAAAAAGACCACAAAAACTACAAAAATTAAAAAAATAGAGAAAAATTAAGGATTCGCCTTCCGATGGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTGTTATTCTCACACGATGATT</pcr_primer_p1>
		<pcr_primer_p2>CATGTATAAGTGTCGACGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATTGTTATTCTCACACGATGATTGAGGAACATACAAAAAATGAGAAAAACTTCAATTCCACGAAAATTGGGAAAAACTTGGGGAATTGTGAAAAAATGGAAAAAAGAGGAAAATGAGGAAACAGTAAGAATACAAAGACAAGAAAAAATTTTCCTCAGCCACCATCAACACTCACACTGCTGCGAACTGTGAGCATCCCGTTTGCTAATCGCTCCAATTATGTCGTCGTTCTCGTCGACACTTATACATG</canonical_amplicon>
		<polymorphic_amplicon>ATTGTTATTCTCACACGATGATTGAGGAACATACAAAAAATGAGAAAAACTTCAATTCCACGAAAATTGGGAAAAACTTGGGGAATTGTGAAAAAATGGAAAAAAGAGGAAAATGAGGAAACAGTAAGAATACAAAGACAAGAAAAAATTTTCYTCAGCCACCATCAACACTCACACTGCTGCGAACTGTGAGCATCCCGTTTGCTAATCGCTCCAATTATGTCGTCGTTCTCGTCGACACTTATACATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39704</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>416658</contig_pos>
        <strand></strand>
        <context>ctaaattact[C/A]aatttctaaa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AAAATTCTAAAATTTCAAGTTTTTGAAAAATTCCAAATTTCTAAATTACT</left_flank>
        <right_flank>AATTTCTAAACTTCTAAATTACTAAATTACTAAATTTCTAAATTTCTGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAACTAATCAAATTCCTAGTGATTTCCGCTTGATATTTTGACACACACACACACACATATTTTACGGATTCTAAGCTGAAAAGGGTATAAGCTGAACAATCTGGAAAATGTCGGAATTTAGATCTTGCGTTTTTATGTTTACTTGTTTTCAGGATTAAAAAAAACATCAGTCATTTTTAAAATAGAATTTGCATGTGATTTTTTGATACTGGGAAGATGAGGAATTACATGATTTTCAGGACGGAATTTTTGGATTTTAATTTTTTTTTTTTTTTTTGGTTTTTTAAGTTTCTGGAAATCTTTTCTGATAGTGATAAACAATGGGAGAATGGGTATATAAATAATTGAAATATTTGTAAATTTTTATTATTTCATTATTATCTCGTCCGAAAAATTTTGAATTTCTAAAATTCTGAAATTTCAGAAAAGTTATGAATATCAGAATTTTTAAAATTCTAAAATTTCAAGTTTTTGAAAAATTCCAAATTTCTAAATTACTCAATTTCTAAACTTCTAAATTACTAAATTACTAAATTTCTAAATTTCTGAATTCTGAAATTCTGAAATTCTGAAATTCGGAAATTCTGAAATTTTTAAATTCTGAAATTCTGAAATTCTGAAATTCTGAATGTCTGAAATTCTGAAATTCTGAATTTCTGAAATTTAGAAATTCTGAAATTCTGAAATTTCCGGAAATTTTGAAATATCAGAATTTAAAAAACTTTTGAATTCCAAATTTTCGAAGAATTCTAAATATCTAAATTCTGGAATTCTGAAATTCGGAAACTCTAAAATCTCAAAATTCTGAACGTTCCGAAAGTTCCAAAATTTCGAAAATTCCCAAAATTTCGAAATTTCCAAAAACCCGAACTCTCAAATTCGCTTTTCTGAAAAACTTAGAAATTTGAAATTCCAAGATTCCAAACTTTCGAAAATTCAAAATTTCCGATTTCCGAAATTTCAAAAAATCGCAGATTTTTAGATTCTCAGATTTTTAAGA</canonical>
            <polymorphic>AAACTAATCAAATTCCTAGTGATTTCCGCTTGATATTTTGACACACACACACACACATATTTTACGGATTCTAAGCTGAAAAGGGTATAAGCTGAACAATCTGGAAAATGTCGGAATTTAGATCTTGCGTTTTTATGTTTACTTGTTTTCAGGATTAAAAAAAACATCAGTCATTTTTAAAATAGAATTTGCATGTGATTTTTTGATACTGGGAAGATGAGGAATTACATGATTTTCAGGACGGAATTTTTGGATTTTAATTTTTTTTTTTTTTTTTGGTTTTTTAAGTTTCTGGAAATCTTTTCTGATAGTGATAAACAATGGGAGAATGGGTATATAAATAATTGAAATATTTGTAAATTTTTATTATTTCATTATTATCTCGTCCGAAAAATTTTGAATTTCTAAAATTCTGAAATTTCAGAAAAGTTATGAATATCAGAATTTTTAAAATTCTAAAATTTCAAGTTTTTGAAAAATTCCAAATTTCTAAATTACTMAATTTCTAAACTTCTAAATTACTAAATTACTAAATTTCTAAATTTCTGAATTCTGAAATTCTGAAATTCTGAAATTCGGAAATTCTGAAATTTTTAAATTCTGAAATTCTGAAATTCTGAAATTCTGAATGTCTGAAATTCTGAAATTCTGAATTTCTGAAATTTAGAAATTCTGAAATTCTGAAATTTCCGGAAATTTTGAAATATCAGAATTTAAAAAACTTTTGAATTCCAAATTTTCGAAGAATTCTAAATATCTAAATTCTGGAATTCTGAAATTCGGAAACTCTAAAATCTCAAAATTCTGAACGTTCCGAAAGTTCCAAAATTTCGAAAATTCCCAAAATTTCGAAATTTCCAAAAACCCGAACTCTCAAATTCGCTTTTCTGAAAAACTTAGAAATTTGAAATTCCAAGATTCCAAACTTTCGAAAATTCAAAATTTCCGATTTCCGAAATTTCAAAAAATCGCAGATTTTTAGATTCTCAGATTTTTAAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTCAGAAAAGTTATGAATATCAG</pcr_primer_p1>
		<pcr_primer_p2>AACTAGGAAACTGGGATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>716</pcr_amplicon_size>
		<canonical_amplicon>AATTTCAGAAAAGTTATGAATATCAGAATTTTTAAAATTCTAAAATTTCAAGTTTTTGAAAAATTCCAAATTTCTAAATTACTCAATTTCTAAACTTCTAAATT</canonical_amplicon>
		<polymorphic_amplicon>AATTTCAGAAAAGTTATGAATATCAGAATTTTTAAAATTCTAAAATTTCAAGTTTTTGAAAAATTCCAAATTTCTAAATTACTMAATTTCTAAACTTCTAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39705</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>416711</contig_pos>
        <strand></strand>
        <context>tttctgaatt[C/T]tgaaattctg</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTTCTAAACTTCTAAATTACTAAATTACTAAATTTCTAAATTTCTGAATT</left_flank>
        <right_flank>TGAAATTCTGAAATTCTGAAATTCGGAAATTCTGAAATTTTTAAATTCTG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACATATTTTACGGATTCTAAGCTGAAAAGGGTATAAGCTGAACAATCTGGAAAATGTCGGAATTTAGATCTTGCGTTTTTATGTTTACTTGTTTTCAGGATTAAAAAAAACATCAGTCATTTTTAAAATAGAATTTGCATGTGATTTTTTGATACTGGGAAGATGAGGAATTACATGATTTTCAGGACGGAATTTTTGGATTTTAATTTTTTTTTTTTTTTTTGGTTTTTTAAGTTTCTGGAAATCTTTTCTGATAGTGATAAACAATGGGAGAATGGGTATATAAATAATTGAAATATTTGTAAATTTTTATTATTTCATTATTATCTCGTCCGAAAAATTTTGAATTTCTAAAATTCTGAAATTTCAGAAAAGTTATGAATATCAGAATTTTTAAAATTCTAAAATTTCAAGTTTTTGAAAAATTCCAAATTTCTAAATTACTCAATTTCTAAACTTCTAAATTACTAAATTACTAAATTTCTAAATTTCTGAATTCTGAAATTCTGAAATTCTGAAATTCGGAAATTCTGAAATTTTTAAATTCTGAAATTCTGAAATTCTGAAATTCTGAATGTCTGAAATTCTGAAATTCTGAATTTCTGAAATTTAGAAATTCTGAAATTCTGAAATTTCCGGAAATTTTGAAATATCAGAATTTAAAAAACTTTTGAATTCCAAATTTTCGAAGAATTCTAAATATCTAAATTCTGGAATTCTGAAATTCGGAAACTCTAAAATCTCAAAATTCTGAACGTTCCGAAAGTTCCAAAATTTCGAAAATTCCCAAAATTTCGAAATTTCCAAAAACCCGAACTCTCAAATTCGCTTTTCTGAAAAACTTAGAAATTTGAAATTCCAAGATTCCAAACTTTCGAAAATTCAAAATTTCCGATTTCCGAAATTTCAAAAAATCGCAGATTTTTAGATTCTCAGATTTTTAAGAGTATTAGGATTTTCCAAAATCCCAAAATCGAAAATTTCCGATTTTTCGAAACT</canonical>
            <polymorphic>CACATATTTTACGGATTCTAAGCTGAAAAGGGTATAAGCTGAACAATCTGGAAAATGTCGGAATTTAGATCTTGCGTTTTTATGTTTACTTGTTTTCAGGATTAAAAAAAACATCAGTCATTTTTAAAATAGAATTTGCATGTGATTTTTTGATACTGGGAAGATGAGGAATTACATGATTTTCAGGACGGAATTTTTGGATTTTAATTTTTTTTTTTTTTTTTGGTTTTTTAAGTTTCTGGAAATCTTTTCTGATAGTGATAAACAATGGGAGAATGGGTATATAAATAATTGAAATATTTGTAAATTTTTATTATTTCATTATTATCTCGTCCGAAAAATTTTGAATTTCTAAAATTCTGAAATTTCAGAAAAGTTATGAATATCAGAATTTTTAAAATTCTAAAATTTCAAGTTTTTGAAAAATTCCAAATTTCTAAATTACTCAATTTCTAAACTTCTAAATTACTAAATTACTAAATTTCTAAATTTCTGAATTYTGAAATTCTGAAATTCTGAAATTCGGAAATTCTGAAATTTTTAAATTCTGAAATTCTGAAATTCTGAAATTCTGAATGTCTGAAATTCTGAAATTCTGAATTTCTGAAATTTAGAAATTCTGAAATTCTGAAATTTCCGGAAATTTTGAAATATCAGAATTTAAAAAACTTTTGAATTCCAAATTTTCGAAGAATTCTAAATATCTAAATTCTGGAATTCTGAAATTCGGAAACTCTAAAATCTCAAAATTCTGAACGTTCCGAAAGTTCCAAAATTTCGAAAATTCCCAAAATTTCGAAATTTCCAAAAACCCGAACTCTCAAATTCGCTTTTCTGAAAAACTTAGAAATTTGAAATTCCAAGATTCCAAACTTTCGAAAATTCAAAATTTCCGATTTCCGAAATTTCAAAAAATCGCAGATTTTTAGATTCTCAGATTTTTAAGAGTATTAGGATTTTCCAAAATCCCAAAATCGAAAATTTCCGATTTTTCGAAACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>114 76 71 61 59 48 34 26 26 25 25 24 24 21 18 17 16 16 16 15 11 10 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7 7 7 7</canonical_bands>
                <polymorphic_bands>114 76 71 61 59 48 34 26 26 25 25 24 24 21 18 17 16 16 16 16 15 11 10 9 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7 7 7 7</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>495 285 179 23 18</canonical_bands>
                <polymorphic_bands>674 285 23 18</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>193 106 82 74 65 60 58 50 35 27 26 24 18 16 16 14 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7</canonical_bands>
                <polymorphic_bands>193 106 82 74 65 60 58 50 35 27 26 24 18 16 16 15 14 9 9 8 8 8 8 8 8 8 8 8 8 8 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTCAGAAAAGTTATGAATATCAG</pcr_primer_p1>
		<pcr_primer_p2>AACTAGGAAACTGGGATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>716</pcr_amplicon_size>
		<canonical_amplicon>AATTTCAGAAAAGTTATGAATATCAGAATTTTTAAAATTCTAAAATTTCAAGTTTTTGAAAAATTCCAAATTTCTAAATTACTCAATTTCTAAACTTCTAAATTACTAAATTACTAAATTTCTAAATTTCTGAATTCTGAAATTCTGAAATTCTGAA</canonical_amplicon>
		<polymorphic_amplicon>AATTTCAGAAAAGTTATGAATATCAGAATTTTTAAAATTCTAAAATTTCAAGTTTTTGAAAAATTCCAAATTTCTAAATTACTCAATTTCTAAACTTCTAAATTACTAAATTACTAAATTTCTAAATTTCTGAATTYTGAAATTCTGAAATTCTGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39706</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>416736</contig_pos>
        <strand></strand>
        <context>tctgaaattc[G/T]gaaattctga</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TACTAAATTTCTAAATTTCTGAATTCTGAAATTCTGAAATTCTGAAATTC</left_flank>
        <right_flank>GAAATTCTGAAATTTTTAAATTCTGAAATTCTGAAATTCTGAAATTCTGA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAGGGTATAAGCTGAACAATCTGGAAAATGTCGGAATTTAGATCTTGCGTTTTTATGTTTACTTGTTTTCAGGATTAAAAAAAACATCAGTCATTTTTAAAATAGAATTTGCATGTGATTTTTTGATACTGGGAAGATGAGGAATTACATGATTTTCAGGACGGAATTTTTGGATTTTAATTTTTTTTTTTTTTTTTGGTTTTTTAAGTTTCTGGAAATCTTTTCTGATAGTGATAAACAATGGGAGAATGGGTATATAAATAATTGAAATATTTGTAAATTTTTATTATTTCATTATTATCTCGTCCGAAAAATTTTGAATTTCTAAAATTCTGAAATTTCAGAAAAGTTATGAATATCAGAATTTTTAAAATTCTAAAATTTCAAGTTTTTGAAAAATTCCAAATTTCTAAATTACTCAATTTCTAAACTTCTAAATTACTAAATTACTAAATTTCTAAATTTCTGAATTCTGAAATTCTGAAATTCTGAAATTCGGAAATTCTGAAATTTTTAAATTCTGAAATTCTGAAATTCTGAAATTCTGAATGTCTGAAATTCTGAAATTCTGAATTTCTGAAATTTAGAAATTCTGAAATTCTGAAATTTCCGGAAATTTTGAAATATCAGAATTTAAAAAACTTTTGAATTCCAAATTTTCGAAGAATTCTAAATATCTAAATTCTGGAATTCTGAAATTCGGAAACTCTAAAATCTCAAAATTCTGAACGTTCCGAAAGTTCCAAAATTTCGAAAATTCCCAAAATTTCGAAATTTCCAAAAACCCGAACTCTCAAATTCGCTTTTCTGAAAAACTTAGAAATTTGAAATTCCAAGATTCCAAACTTTCGAAAATTCAAAATTTCCGATTTCCGAAATTTCAAAAAATCGCAGATTTTTAGATTCTCAGATTTTTAAGAGTATTAGGATTTTCCAAAATCCCAAAATCGAAAATTTCCGATTTTTCGAAACTTCTGAATTCCAAAATTTTCCGTTTC</canonical>
            <polymorphic>AAAAGGGTATAAGCTGAACAATCTGGAAAATGTCGGAATTTAGATCTTGCGTTTTTATGTTTACTTGTTTTCAGGATTAAAAAAAACATCAGTCATTTTTAAAATAGAATTTGCATGTGATTTTTTGATACTGGGAAGATGAGGAATTACATGATTTTCAGGACGGAATTTTTGGATTTTAATTTTTTTTTTTTTTTTTGGTTTTTTAAGTTTCTGGAAATCTTTTCTGATAGTGATAAACAATGGGAGAATGGGTATATAAATAATTGAAATATTTGTAAATTTTTATTATTTCATTATTATCTCGTCCGAAAAATTTTGAATTTCTAAAATTCTGAAATTTCAGAAAAGTTATGAATATCAGAATTTTTAAAATTCTAAAATTTCAAGTTTTTGAAAAATTCCAAATTTCTAAATTACTCAATTTCTAAACTTCTAAATTACTAAATTACTAAATTTCTAAATTTCTGAATTCTGAAATTCTGAAATTCTGAAATTCKGAAATTCTGAAATTTTTAAATTCTGAAATTCTGAAATTCTGAAATTCTGAATGTCTGAAATTCTGAAATTCTGAATTTCTGAAATTTAGAAATTCTGAAATTCTGAAATTTCCGGAAATTTTGAAATATCAGAATTTAAAAAACTTTTGAATTCCAAATTTTCGAAGAATTCTAAATATCTAAATTCTGGAATTCTGAAATTCGGAAACTCTAAAATCTCAAAATTCTGAACGTTCCGAAAGTTCCAAAATTTCGAAAATTCCCAAAATTTCGAAATTTCCAAAAACCCGAACTCTCAAATTCGCTTTTCTGAAAAACTTAGAAATTTGAAATTCCAAGATTCCAAACTTTCGAAAATTCAAAATTTCCGATTTCCGAAATTTCAAAAAATCGCAGATTTTTAGATTCTCAGATTTTTAAGAGTATTAGGATTTTCCAAAATCCCAAAATCGAAAATTTCCGATTTTTCGAAACTTCTGAATTCCAAAATTTTCCGTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATTTCAGAAAAGTTATGAATATCAG</pcr_primer_p1>
		<pcr_primer_p2>AACTAGGAAACTGGGATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>716</pcr_amplicon_size>
		<canonical_amplicon>AATTTCAGAAAAGTTATGAATATCAGAATTTTTAAAATTCTAAAATTTCAAGTTTTTGAAAAATTCCAAATTTCTAAATTACTCAATTTCTAAACTTCTAAATTACTAAATTACTAAATTTCTAAATTTCTGAATTCTGAAATTCTGAAATTCTGAAATTCGGAAATTCTGAAATTTTTAAA</canonical_amplicon>
		<polymorphic_amplicon>AATTTCAGAAAAGTTATGAATATCAGAATTTTTAAAATTCTAAAATTTCAAGTTTTTGAAAAATTCCAAATTTCTAAATTACTCAATTTCTAAACTTCTAAATTACTAAATTACTAAATTTCTAAATTTCTGAATTCTGAAATTCTGAAATTCTGAAATTCKGAAATTCTGAAATTTTTAAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39707</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>416753</contig_pos>
        <strand></strand>
        <context>ctgaaatttt[T/G]aaattctgaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TCTGAATTCTGAAATTCTGAAATTCTGAAATTCGGAAATTCTGAAATTTT</left_flank>
        <right_flank>AAATTCTGAAATTCTGAAATTCTGAAATTCTGAATGTCTGAAATTCTGAA</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAATCTGGAAAATGTCGGAATTTAGATCTTGCGTTTTTATGTTTACTTGTTTTCAGGATTAAAAAAAACATCAGTCATTTTTAAAATAGAATTTGCATGTGATTTTTTGATACTGGGAAGATGAGGAATTACATGATTTTCAGGACGGAATTTTTGGATTTTAATTTTTTTTTTTTTTTTTGGTTTTTTAAGTTTCTGGAAATCTTTTCTGATAGTGATAAACAATGGGAGAATGGGTATATAAATAATTGAAATATTTGTAAATTTTTATTATTTCATTATTATCTCGTCCGAAAAATTTTGAATTTCTAAAATTCTGAAATTTCAGAAAAGTTATGAATATCAGAATTTTTAAAATTCTAAAATTTCAAGTTTTTGAAAAATTCCAAATTTCTAAATTACTCAATTTCTAAACTTCTAAATTACTAAATTACTAAATTTCTAAATTTCTGAATTCTGAAATTCTGAAATTCTGAAATTCGGAAATTCTGAAATTTTTAAATTCTGAAATTCTGAAATTCTGAAATTCTGAATGTCTGAAATTCTGAAATTCTGAATTTCTGAAATTTAGAAATTCTGAAATTCTGAAATTTCCGGAAATTTTGAAATATCAGAATTTAAAAAACTTTTGAATTCCAAATTTTCGAAGAATTCTAAATATCTAAATTCTGGAATTCTGAAATTCGGAAACTCTAAAATCTCAAAATTCTGAACGTTCCGAAAGTTCCAAAATTTCGAAAATTCCCAAAATTTCGAAATTTCCAAAAACCCGAACTCTCAAATTCGCTTTTCTGAAAAACTTAGAAATTTGAAATTCCAAGATTCCAAACTTTCGAAAATTCAAAATTTCCGATTTCCGAAATTTCAAAAAATCGCAGATTTTTAGATTCTCAGATTTTTAAGAGTATTAGGATTTTCCAAAATCCCAAAATCGAAAATTTCCGATTTTTCGAAACTTCTGAATTCCAAAATTTTCCGTTTCTTGAAATCTTAGATTCT</canonical>
            <polymorphic>ACAATCTGGAAAATGTCGGAATTTAGATCTTGCGTTTTTATGTTTACTTGTTTTCAGGATTAAAAAAAACATCAGTCATTTTTAAAATAGAATTTGCATGTGATTTTTTGATACTGGGAAGATGAGGAATTACATGATTTTCAGGACGGAATTTTTGGATTTTAATTTTTTTTTTTTTTTTTGGTTTTTTAAGTTTCTGGAAATCTTTTCTGATAGTGATAAACAATGGGAGAATGGGTATATAAATAATTGAAATATTTGTAAATTTTTATTATTTCATTATTATCTCGTCCGAAAAATTTTGAATTTCTAAAATTCTGAAATTTCAGAAAAGTTATGAATATCAGAATTTTTAAAATTCTAAAATTTCAAGTTTTTGAAAAATTCCAAATTTCTAAATTACTCAATTTCTAAACTTCTAAATTACTAAATTACTAAATTTCTAAATTTCTGAATTCTGAAATTCTGAAATTCTGAAATTCGGAAATTCTGAAATTTTKAAATTCTGAAATTCTGAAATTCTGAAATTCTGAATGTCTGAAATTCTGAAATTCTGAATTTCTGAAATTTAGAAATTCTGAAATTCTGAAATTTCCGGAAATTTTGAAATATCAGAATTTAAAAAACTTTTGAATTCCAAATTTTCGAAGAATTCTAAATATCTAAATTCTGGAATTCTGAAATTCGGAAACTCTAAAATCTCAAAATTCTGAACGTTCCGAAAGTTCCAAAATTTCGAAAATTCCCAAAATTTCGAAATTTCCAAAAACCCGAACTCTCAAATTCGCTTTTCTGAAAAACTTAGAAATTTGAAATTCCAAGATTCCAAACTTTCGAAAATTCAAAATTTCCGATTTCCGAAATTTCAAAAAATCGCAGATTTTTAGATTCTCAGATTTTTAAGAGTATTAGGATTTTCCAAAATCCCAAAATCGAAAATTTCCGATTTTTCGAAACTTCTGAATTCCAAAATTTTCCGTTTCTTGAAATCTTAGATTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>380 271 146 120 83</canonical_bands>
                <polymorphic_bands>380 271 266 83</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>281 164 146 120 100 80 60 27 22</canonical_bands>
                <polymorphic_bands>281 266 164 100 80 60 27 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATTTCAGAAAAGTTATGAATATCAG</pcr_primer_p1>
		<pcr_primer_p2>AACTAGGAAACTGGGATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>716</pcr_amplicon_size>
		<canonical_amplicon>AATTTCAGAAAAGTTATGAATATCAGAATTTTTAAAATTCTAAAATTTCAAGTTTTTGAAAAATTCCAAATTTCTAAATTACTCAATTTCTAAACTTCTAAATTACTAAATTACTAAATTTCTAAATTTCTGAATTCTGAAATTCTGAAATTCTGAAATTCGGAAATTCTGAAATTTTTAAATTCTGAAATTCTGAAAT</canonical_amplicon>
		<polymorphic_amplicon>AATTTCAGAAAAGTTATGAATATCAGAATTTTTAAAATTCTAAAATTTCAAGTTTTTGAAAAATTCCAAATTTCTAAATTACTCAATTTCTAAACTTCTAAATTACTAAATTACTAAATTTCTAAATTTCTGAATTCTGAAATTCTGAAATTCTGAAATTCGGAAATTCTGAAATTTTKAAATTCTGAAATTCTGAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39708</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>418795</contig_pos>
        <strand>+</strand>
        <context>ACTGTTCAGG[C/T]GTCTMGAATG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGG</left_flank>
        <right_flank>GTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATGTAAAATTAAAGATCTTGAAGGGTTTTGAATCTTTTTTTCTAGAATTTTTTCTAGAAAATTCCAAAAAAAAATCAATTTCCAATTTCATCTTCATCATAATTCATTCTCTATGGCTGTTCCGCGGGACGCGGAACAGTTTGTGTATAATATAGAGAGAAAAGGGAGAAGCTTCTTTGCTATCCGATTCAGTGAGGGAGAGAAAGAGAGAGATAAGGGAAACTTGAGAGGATTAGAGAAAACGAGAGACGAACAGTCTCCTCGTTCTCTTTCTCTTTAAATACAATATACATAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAATTGGCTGATTGACCGAAGAAGCAAGCAAGCAAGAAGCATTGAATTTCAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATG</canonical>
            <polymorphic>ATGTAAAATTAAAGATCTTGAAGGGTTTTGAATCTTTTTTTCTAGAATTTTTTCTAGAAAATTCCAAAAAAAAATCAATTTCCAATTTCATCTTCATCATAATTCATTCTCTATGGCTGTTCCGCGGGACGCGGAACAGTTTGTGTATAATATAGAGAGAAAAGGGAGAAGCTTCTTTGCTATCCGATTCAGTGAGGGAGAGAAAGAGAGAGATAAGGGAAACTTGAGAGGATTAGAGAAAACGAGAGACGAACAGTCTCCTCGTTCTCTTTCTCTTTAAATACAATATACATAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAATTGGCTGATTGACCGAAGAAGCAAGCAAGCAAGAAGCATTGAATTTCAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGYGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GRCGYC</site>
                <isoschizomers>
                    <enzyme>AcyI</enzyme>
                    <enzyme>BsaHI</enzyme>
                    <enzyme>BstACI</enzyme>
                    <enzyme>Hin1I</enzyme>
                    <enzyme>Hsp92I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATCCGATTTATATTTATTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TCCAGAAGAACTCAGGATATCTA</pcr_primer_p2>
		<pcr_amplicon_size>282</pcr_amplicon_size>
		<canonical_amplicon>CAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGA</canonical_amplicon>
		<polymorphic_amplicon>CAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGYGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39709</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>418800</contig_pos>
        <strand>+</strand>
        <context>TCAGGYGTCT[A/C]GAATGGAAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCT</left_flank>
        <right_flank>GAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGA</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATTAAAGATCTTGAAGGGTTTTGAATCTTTTTTTCTAGAATTTTTTCTAGAAAATTCCAAAAAAAAATCAATTTCCAATTTCATCTTCATCATAATTCATTCTCTATGGCTGTTCCGCGGGACGCGGAACAGTTTGTGTATAATATAGAGAGAAAAGGGAGAAGCTTCTTTGCTATCCGATTCAGTGAGGGAGAGAAAGAGAGAGATAAGGGAAACTTGAGAGGATTAGAGAAAACGAGAGACGAACAGTCTCCTCGTTCTCTTTCTCTTTAAATACAATATACATAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAATTGGCTGATTGACCGAAGAAGCAAGCAAGCAAGAAGCATTGAATTTCAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTT</canonical>
            <polymorphic>AAATTAAAGATCTTGAAGGGTTTTGAATCTTTTTTTCTAGAATTTTTTCTAGAAAATTCCAAAAAAAAATCAATTTCCAATTTCATCTTCATCATAATTCATTCTCTATGGCTGTTCCGCGGGACGCGGAACAGTTTGTGTATAATATAGAGAGAAAAGGGAGAAGCTTCTTTGCTATCCGATTCAGTGAGGGAGAGAAAGAGAGAGATAAGGGAAACTTGAGAGGATTAGAGAAAACGAGAGACGAACAGTCTCCTCGTTCTCTTTCTCTTTAAATACAATATACATAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAATTGGCTGATTGACCGAAGAAGCAAGCAAGCAAGAAGCATTGAATTTCAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTMGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>500 222 116 86 54 22</canonical_bands>
                <polymorphic_bands>722 116 86 54 22</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATCCGATTTATATTTATTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TCCAGAAGAACTCAGGATATCTA</pcr_primer_p2>
		<pcr_amplicon_size>282</pcr_amplicon_size>
		<canonical_amplicon>CAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGA</canonical_amplicon>
		<polymorphic_amplicon>CAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTMGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39710</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>418812</contig_pos>
        <strand>+</strand>
        <context>AATGGAAATT[C/T]TKCAGAATYC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATT</left_flank>
        <right_flank>TGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTC</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGAAGGGTTTTGAATCTTTTTTTCTAGAATTTTTTCTAGAAAATTCCAAAAAAAAATCAATTTCCAATTTCATCTTCATCATAATTCATTCTCTATGGCTGTTCCGCGGGACGCGGAACAGTTTGTGTATAATATAGAGAGAAAAGGGAGAAGCTTCTTTGCTATCCGATTCAGTGAGGGAGAGAAAGAGAGAGATAAGGGAAACTTGAGAGGATTAGAGAAAACGAGAGACGAACAGTCTCCTCGTTCTCTTTCTCTTTAAATACAATATACATAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAATTGGCTGATTGACCGAAGAAGCAAGCAAGCAAGAAGCATTGAATTTCAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATAT</canonical>
            <polymorphic>TTGAAGGGTTTTGAATCTTTTTTTCTAGAATTTTTTCTAGAAAATTCCAAAAAAAAATCAATTTCCAATTTCATCTTCATCATAATTCATTCTCTATGGCTGTTCCGCGGGACGCGGAACAGTTTGTGTATAATATAGAGAGAAAAGGGAGAAGCTTCTTTGCTATCCGATTCAGTGAGGGAGAGAAAGAGAGAGATAAGGGAAACTTGAGAGGATTAGAGAAAACGAGAGACGAACAGTCTCCTCGTTCTCTTTCTCTTTAAATACAATATACATAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAATTGGCTGATTGACCGAAGAAGCAAGCAAGCAAGAAGCATTGAATTTCAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTYTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>332 121 105 80 66 61 61 37 36 28 14 10 10 9 8 8 8 6</canonical_bands>
                <polymorphic_bands>332 187 105 80 61 61 37 36 28 14 10 10 9 8 8 8 6</polymorphic_bands>
            </assay>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTGCAG</site>
                <isoschizomers>
                    <enzyme>BloHII</enzyme>
                    <enzyme>BstMAI</enzyme>
                    <enzyme>PstI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATCCGATTTATATTTATTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TCCAGAAGAACTCAGGATATCTA</pcr_primer_p2>
		<pcr_amplicon_size>282</pcr_amplicon_size>
		<canonical_amplicon>CAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGA</canonical_amplicon>
		<polymorphic_amplicon>CAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTYTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39711</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>418814</contig_pos>
        <strand>+</strand>
        <context>TGGAAATTYT[G/T]CAGAATYCGG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCT</left_flank>
        <right_flank>CAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTG</right_flank>
        <qual_score>143</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAAGGGTTTTGAATCTTTTTTTCTAGAATTTTTTCTAGAAAATTCCAAAAAAAAATCAATTTCCAATTTCATCTTCATCATAATTCATTCTCTATGGCTGTTCCGCGGGACGCGGAACAGTTTGTGTATAATATAGAGAGAAAAGGGAGAAGCTTCTTTGCTATCCGATTCAGTGAGGGAGAGAAAGAGAGAGATAAGGGAAACTTGAGAGGATTAGAGAAAACGAGAGACGAACAGTCTCCTCGTTCTCTTTCTCTTTAAATACAATATACATAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAATTGGCTGATTGACCGAAGAAGCAAGCAAGCAAGAAGCATTGAATTTCAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATAT</canonical>
            <polymorphic>GAAGGGTTTTGAATCTTTTTTTCTAGAATTTTTTCTAGAAAATTCCAAAAAAAAATCAATTTCCAATTTCATCTTCATCATAATTCATTCTCTATGGCTGTTCCGCGGGACGCGGAACAGTTTGTGTATAATATAGAGAGAAAAGGGAGAAGCTTCTTTGCTATCCGATTCAGTGAGGGAGAGAAAGAGAGAGATAAGGGAAACTTGAGAGGATTAGAGAAAACGAGAGACGAACAGTCTCCTCGTTCTCTTTCTCTTTAAATACAATATACATAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAATTGGCTGATTGACCGAAGAAGCAAGCAAGCAAGAAGCATTGAATTTCAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTKCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTRYAG</site>
                <isoschizomers>
                    <enzyme>BfmI</enzyme>
                    <enzyme>BstSFI</enzyme>
                    <enzyme>SfcI</enzyme>
                    <enzyme>SfeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CTGCAG</site>
                <isoschizomers>
                    <enzyme>BloHII</enzyme>
                    <enzyme>BstMAI</enzyme>
                    <enzyme>PstI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>500 280 190 30</canonical_bands>
                <polymorphic_bands>780 190 30</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATCCGATTTATATTTATTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TCCAGAAGAACTCAGGATATCTA</pcr_primer_p2>
		<pcr_amplicon_size>282</pcr_amplicon_size>
		<canonical_amplicon>CAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGA</canonical_amplicon>
		<polymorphic_amplicon>CAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTKCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39712</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>418821</contig_pos>
        <strand>+</strand>
        <context>TYTKCAGAAT[C/T]CGGAAYYWCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAAT</left_flank>
        <right_flank>CGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATT</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTGAATCTTTTTTTCTAGAATTTTTTCTAGAAAATTCCAAAAAAAAATCAATTTCCAATTTCATCTTCATCATAATTCATTCTCTATGGCTGTTCCGCGGGACGCGGAACAGTTTGTGTATAATATAGAGAGAAAAGGGAGAAGCTTCTTTGCTATCCGATTCAGTGAGGGAGAGAAAGAGAGAGATAAGGGAAACTTGAGAGGATTAGAGAAAACGAGAGACGAACAGTCTCCTCGTTCTCTTTCTCTTTAAATACAATATACATAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAATTGGCTGATTGACCGAAGAAGCAAGCAAGCAAGAAGCATTGAATTTCAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCT</canonical>
            <polymorphic>TTTGAATCTTTTTTTCTAGAATTTTTTCTAGAAAATTCCAAAAAAAAATCAATTTCCAATTTCATCTTCATCATAATTCATTCTCTATGGCTGTTCCGCGGGACGCGGAACAGTTTGTGTATAATATAGAGAGAAAAGGGAGAAGCTTCTTTGCTATCCGATTCAGTGAGGGAGAGAAAGAGAGAGATAAGGGAAACTTGAGAGGATTAGAGAAAACGAGAGACGAACAGTCTCCTCGTTCTCTTTCTCTTTAAATACAATATACATAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAATTGGCTGATTGACCGAAGAAGCAAGCAAGCAAGAAGCATTGAATTTCAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATYCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCCGGA</site>
                <isoschizomers>
                    <enzyme>AccIII</enzyme>
                    <enzyme>BseAI</enzyme>
                    <enzyme>BsiMI</enzyme>
                    <enzyme>Bsp13I</enzyme>
                    <enzyme>BspEI</enzyme>
                    <enzyme>BspMII</enzyme>
                    <enzyme>Kpn2I</enzyme>
                    <enzyme>MroI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>413 336 156 91 4</canonical_bands>
                <polymorphic_bands>427 413 156 4</polymorphic_bands>
            </assay>
            <assay>
                <site>TCNNGA</site>
                <isoschizomers>
                    <enzyme>Hpy178III</enzyme>
                    <enzyme>Hpy188III</enzyme>
                </isoschizomers>
                <canonical_bands>449 352 74 63 23 16 12 11</canonical_bands>
                <polymorphic_bands>449 352 97 63 16 12 11</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>413 336 156 91 4</canonical_bands>
                <polymorphic_bands>427 413 156 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATCCGATTTATATTTATTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TCCAGAAGAACTCAGGATATCTA</pcr_primer_p2>
		<pcr_amplicon_size>282</pcr_amplicon_size>
		<canonical_amplicon>CAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGA</canonical_amplicon>
		<polymorphic_amplicon>CAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATYCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39713</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>418827</contig_pos>
        <strand>+</strand>
        <context>GAATYCGGAA[C/T]YWCTGATTTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAA</left_flank>
        <right_flank>CACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTTTTTTTCTAGAATTTTTTCTAGAAAATTCCAAAAAAAAATCAATTTCCAATTTCATCTTCATCATAATTCATTCTCTATGGCTGTTCCGCGGGACGCGGAACAGTTTGTGTATAATATAGAGAGAAAAGGGAGAAGCTTCTTTGCTATCCGATTCAGTGAGGGAGAGAAAGAGAGAGATAAGGGAAACTTGAGAGGATTAGAGAAAACGAGAGACGAACAGTCTCCTCGTTCTCTTTCTCTTTAAATACAATATACATAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAATTGGCTGATTGACCGAAGAAGCAAGCAAGCAAGAAGCATTGAATTTCAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTT</canonical>
            <polymorphic>TCTTTTTTTCTAGAATTTTTTCTAGAAAATTCCAAAAAAAAATCAATTTCCAATTTCATCTTCATCATAATTCATTCTCTATGGCTGTTCCGCGGGACGCGGAACAGTTTGTGTATAATATAGAGAGAAAAGGGAGAAGCTTCTTTGCTATCCGATTCAGTGAGGGAGAGAAAGAGAGAGATAAGGGAAACTTGAGAGGATTAGAGAAAACGAGAGACGAACAGTCTCCTCGTTCTCTTTCTCTTTAAATACAATATACATAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAATTGGCTGATTGACCGAAGAAGCAAGCAAGCAAGAAGCATTGAATTTCAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAAYCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATCCGATTTATATTTATTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TCCAGAAGAACTCAGGATATCTA</pcr_primer_p2>
		<pcr_amplicon_size>282</pcr_amplicon_size>
		<canonical_amplicon>CAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGA</canonical_amplicon>
		<polymorphic_amplicon>CAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAAYCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39714</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>418828</contig_pos>
        <strand>+</strand>
        <context>AATYCGGAAY[C/T]WCTGATTTCT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAAC</left_flank>
        <right_flank>ACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTTTTTTTCTAGAATTTTTTCTAGAAAATTCCAAAAAAAAATCAATTTCCAATTTCATCTTCATCATAATTCATTCTCTATGGCTGTTCCGCGGGACGCGGAACAGTTTGTGTATAATATAGAGAGAAAAGGGAGAAGCTTCTTTGCTATCCGATTCAGTGAGGGAGAGAAAGAGAGAGATAAGGGAAACTTGAGAGGATTAGAGAAAACGAGAGACGAACAGTCTCCTCGTTCTCTTTCTCTTTAAATACAATATACATAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAATTGGCTGATTGACCGAAGAAGCAAGCAAGCAAGAAGCATTGAATTTCAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTG</canonical>
            <polymorphic>CTTTTTTTCTAGAATTTTTTCTAGAAAATTCCAAAAAAAAATCAATTTCCAATTTCATCTTCATCATAATTCATTCTCTATGGCTGTTCCGCGGGACGCGGAACAGTTTGTGTATAATATAGAGAGAAAAGGGAGAAGCTTCTTTGCTATCCGATTCAGTGAGGGAGAGAAAGAGAGAGATAAGGGAAACTTGAGAGGATTAGAGAAAACGAGAGACGAACAGTCTCCTCGTTCTCTTTCTCTTTAAATACAATATACATAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAATTGGCTGATTGACCGAAGAAGCAAGCAAGCAAGAAGCATTGAATTTCAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACYACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>265 237 112 103 78 71 49 31 23 20 9 2</canonical_bands>
                <polymorphic_bands>502 112 103 78 71 49 31 23 20 9 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATCCGATTTATATTTATTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TCCAGAAGAACTCAGGATATCTA</pcr_primer_p2>
		<pcr_amplicon_size>282</pcr_amplicon_size>
		<canonical_amplicon>CAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGA</canonical_amplicon>
		<polymorphic_amplicon>CAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACYACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39715</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>418829</contig_pos>
        <strand>+</strand>
        <context>ATYCGGAAYY[A/T]CTGATTTCTT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACC</left_flank>
        <right_flank>CTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCA</right_flank>
        <qual_score>134</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTTCTAGAATTTTTTCTAGAAAATTCCAAAAAAAAATCAATTTCCAATTTCATCTTCATCATAATTCATTCTCTATGGCTGTTCCGCGGGACGCGGAACAGTTTGTGTATAATATAGAGAGAAAAGGGAGAAGCTTCTTTGCTATCCGATTCAGTGAGGGAGAGAAAGAGAGAGATAAGGGAAACTTGAGAGGATTAGAGAAAACGAGAGACGAACAGTCTCCTCGTTCTCTTTCTCTTTAAATACAATATACATAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAATTGGCTGATTGACCGAAGAAGCAAGCAAGCAAGAAGCATTGAATTTCAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGA</canonical>
            <polymorphic>TTTTTTTCTAGAATTTTTTCTAGAAAATTCCAAAAAAAAATCAATTTCCAATTTCATCTTCATCATAATTCATTCTCTATGGCTGTTCCGCGGGACGCGGAACAGTTTGTGTATAATATAGAGAGAAAAGGGAGAAGCTTCTTTGCTATCCGATTCAGTGAGGGAGAGAAAGAGAGAGATAAGGGAAACTTGAGAGGATTAGAGAAAACGAGAGACGAACAGTCTCCTCGTTCTCTTTCTCTTTAAATACAATATACATAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAATTGGCTGATTGACCGAAGAAGCAAGCAAGCAAGAAGCATTGAATTTCAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCWCTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>265 237 111 103 78 71 49 32 23 20 9 2</canonical_bands>
                <polymorphic_bands>502 111 103 78 71 49 32 23 20 9 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATCCGATTTATATTTATTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>TCCAGAAGAACTCAGGATATCTA</pcr_primer_p2>
		<pcr_amplicon_size>282</pcr_amplicon_size>
		<canonical_amplicon>CAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGA</canonical_amplicon>
		<polymorphic_amplicon>CAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCWCTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39716</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>418928</contig_pos>
        <strand></strand>
        <context>cttttcggat[A/C]atttctgaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGAT</left_flank>
        <right_flank>ATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GAACAGTTTGTGTATAATATAGAGAGAAAAGGGAGAAGCTTCTTTGCTATCCGATTCAGTGAGGGAGAGAAAGAGAGAGATAAGGGAAACTTGAGAGGATTAGAGAAAACGAGAGACGAACAGTCTCCTCGTTCTCTTTCTCTTTAAATACAATATACATAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAATTGGCTGATTGACCGAAGAAGCAAGCAAGCAAGAAGCATTGAATTTCAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGA</canonical>
            <polymorphic>GAACAGTTTGTGTATAATATAGAGAGAAAAGGGAGAAGCTTCTTTGCTATCCGATTCAGTGAGGGAGAGAAAGAGAGAGATAAGGGAAACTTGAGAGGATTAGAGAAAACGAGAGACGAACAGTCTCCTCGTTCTCTTTCTCTTTAAATACAATATACATAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAATTGGCTGATTGACCGAAGAAGCAAGCAAGCAAGAAGCATTGAATTTCAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATMATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>215 142 121 105 66 61 43 38 36 28 24 23 19 11 10 10 9 9 8 8 8 6</canonical_bands>
                <polymorphic_bands>215 142 121 105 66 61 43 38 37 36 24 23 19 11 10 10 9 8 8 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAATCCGATTTATATTTATTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>AATTCTTAAAATCCAGAAGAACTC</pcr_primer_p2>
		<pcr_amplicon_size>293</pcr_amplicon_size>
		<canonical_amplicon>CAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATT</canonical_amplicon>
		<polymorphic_amplicon>CAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATMATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39717</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>418994</contig_pos>
        <strand>+</strand>
        <context>TTCTGAAAAC[A/G]TTTTTTGGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAAC</left_flank>
        <right_flank>TTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAAAGAGAGAGATAAGGGAAACTTGAGAGGATTAGAGAAAACGAGAGACGAACAGTCTCCTCGTTCTCTTTCTCTTTAAATACAATATACATAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAATTGGCTGATTGACCGAAGAAGCAAGCAAGCAAGAAGCATTGAATTTCAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATT</canonical>
            <polymorphic>GAGAAAGAGAGAGATAAGGGAAACTTGAGAGGATTAGAGAAAACGAGAGACGAACAGTCTCCTCGTTCTCTTTCTCTTTAAATACAATATACATAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAATTGGCTGATTGACCGAAGAAGCAAGCAAGCAAGAAGCATTGAATTTCAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACRTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAATCCGATTTATATTTATTTCTTT</pcr_primer_p1>
		<pcr_primer_p2>GACATTTTCTGAATTTTTGAGAT</pcr_primer_p2>
		<pcr_amplicon_size>365</pcr_amplicon_size>
		<canonical_amplicon>CAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTC</canonical_amplicon>
		<polymorphic_amplicon>CAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACRTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39718</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>419017</contig_pos>
        <strand></strand>
        <context>TTTTTTCGGA[G/A]TTTTCGATTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGA</left_flank>
        <right_flank>TTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACT</right_flank>
        <qual_score>44</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGAGAGGATTAGAGAAAACGAGAGACGAACAGTCTCCTCGTTCTCTTTCTCTTTAAATACAATATACATAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAATTGGCTGATTGACCGAAGAAGCAAGCAAGCAAGAAGCATTGAATTTCAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGA</canonical>
            <polymorphic>CTTGAGAGGATTAGAGAAAACGAGAGACGAACAGTCTCCTCGTTCTCTTTCTCTTTAAATACAATATACATAGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAATTGGCTGATTGACCGAAGAAGCAAGCAAGCAAGAAGCATTGAATTTCAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGARTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCCTGAGTTCTTCTGGATTTT</pcr_primer_p1>
		<pcr_primer_p2>GAAGAGTAGACAAAAGATCGAATTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTC</canonical_amplicon>
		<polymorphic_amplicon>TATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGARTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39719</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>419108</contig_pos>
        <strand>+</strand>
        <context>AATCTCTTTT[C/T]GWAAAAAAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTT</left_flank>
        <right_flank>GAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAATTGGCTGATTGACCGAAGAAGCAAGCAAGCAAGAAGCATTGAATTTCAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCT</canonical>
            <polymorphic>AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAATTGGCTGATTGACCGAAGAAGCAAGCAAGCAAGAAGCATTGAATTTCAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTYGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>424 222 192 86 54 22</canonical_bands>
                <polymorphic_bands>424 222 192 108 54</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTCAAAAATTCAGAAAATGTC</pcr_primer_p1>
		<pcr_primer_p2>ATGTTTGTAGGAGAAAGCACAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTYGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39720</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>419110</contig_pos>
        <strand>+</strand>
        <context>TCTCTTTTYG[A/T]AAAAAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCG</left_flank>
        <right_flank>AAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAATTGGCTGATTGACCGAAGAAGCAAGCAAGCAAGAAGCATTGAATTTCAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAG</canonical>
            <polymorphic>AGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAATTGGCTGATTGACCGAAGAAGCAAGCAAGCAAGAAGCATTGAATTTCAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGWAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>426 222 190 86 54 22</canonical_bands>
                <polymorphic_bands>426 222 190 108 54</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCTCAAAAATTCAGAAAATGTC</pcr_primer_p1>
		<pcr_primer_p2>ATGTTTGTAGGAGAAAGCACAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGWAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39721</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>419135</contig_pos>
        <strand></strand>
        <context>TTTATCGAAT[A/T]TGTTCAGCTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAAT</left_flank>
        <right_flank>TGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCG</right_flank>
        <qual_score>47</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAGAAGAAAATTGGCTGATTGACCGAAGAAGCAAGCAAGCAAGAAGCATTGAATTTCAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGT</canonical>
            <polymorphic>GAGAAGAAAATTGGCTGATTGACCGAAGAAGCAAGCAAGCAAGAAGCATTGAATTTCAATCCGATTTATATTTATTTCTTTTTTATTTATCTCTGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTGTCTCTTTGATGTTAACTGTTCAGGCGTCTCGAATGGAAATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATWTGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATCTCAAAAATTCAGAAAATGTC</pcr_primer_p1>
		<pcr_primer_p2>ATGTTTGTAGGAGAAAGCACAG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACAT</canonical_amplicon>
		<polymorphic_amplicon>ATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATWTGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39722</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>419307</contig_pos>
        <strand>+</strand>
        <context>GGTTTTTATT[A/T]TATATATATA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATT</left_flank>
        <right_flank>TATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACAT</canonical>
            <polymorphic>AATTCTGCAGAATCCGGAACCACTGATTTCTTTGGATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTWTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTAGCTAGAGCTGTGCTTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTAAGAATGCAATAAGTCAAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAA</canonical_amplicon>
		<polymorphic_amplicon>GTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTWTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39723</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>419341</contig_pos>
        <strand>+</strand>
        <context>AAACCAAAAC[A/G]TTTTTCTGCR</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAAC</left_flank>
        <right_flank>TTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATA</canonical>
            <polymorphic>GATTAGGGACTTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACRTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTAGCTAGAGCTGTGCTTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTAAGAATGCAATAAGTCAAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAA</canonical_amplicon>
		<polymorphic_amplicon>GTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACRTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39724</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>419351</contig_pos>
        <strand>+</strand>
        <context>RTTTTTCTGC[A/G]TTTTTTTAGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGC</left_flank>
        <right_flank>TTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTATGATAAG</canonical>
            <polymorphic>TTTTTGAACTCTGAATGATTTGAATTCAAAAATTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCRTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTATGATAAG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTAGCTAGAGCTGTGCTTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTAAGAATGCAATAAGTCAAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAA</canonical_amplicon>
		<polymorphic_amplicon>GTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCRTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39725</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>419383</contig_pos>
        <strand>+</strand>
        <context>CCAATTTTCC[A/T]TTTTTTWRGT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCC</left_flank>
        <right_flank>TTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTATGATAAGCATTTTTTCAGCATTTCTAAATTTGACTCTAA</canonical>
            <polymorphic>TTTCAGAATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCWTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTATGATAAGCATTTTTTCAGCATTTCTAAATTTGACTCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTAGCTAGAGCTGTGCTTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTAAGAATGCAATAAGTCAAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAA</canonical_amplicon>
		<polymorphic_amplicon>GTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCWTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39726</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>419390</contig_pos>
        <strand></strand>
        <context>TCCWTTTTTT[T/A]RGTTCAAAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTT</left_flank>
        <right_flank>GGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTATGATAAGCATTTTTTCAGCATTTCTAAATTTGACTCTAATTATCTC</canonical>
            <polymorphic>ATTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTWGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTATGATAAGCATTTTTTCAGCATTTCTAAATTTGACTCTAATTATCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTAGCTAGAGCTGTGCTTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTAAGAATGCAATAAGTCAAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAA</canonical_amplicon>
		<polymorphic_amplicon>GTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTWGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39727</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>419391</contig_pos>
        <strand></strand>
        <context>CCWTTTTTTW[G/A]GTTCAAAAAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTT</left_flank>
        <right_flank>GTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTATGATAAGCATTTTTTCAGCATTTCTAAATTTGACTCTAATTATCTCG</canonical>
            <polymorphic>TTTCTTGAAATTTTCGGAATCCTAAACTTTTCGGATAATTTCTGAAATTTTGGAATTTTTAGATATCCTGAGTTCTTCTGGATTTTAAGAATTTCTGAAAACTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTRGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTATGATAAGCATTTTTTCAGCATTTCTAAATTTGACTCTAATTATCTCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTAGCTAGAGCTGTGCTTTCT</pcr_primer_p1>
		<pcr_primer_p2>TTAAGAATGCAATAAGTCAAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>GTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAA</canonical_amplicon>
		<polymorphic_amplicon>GTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTRGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39728</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>419492</contig_pos>
        <strand>+</strand>
        <context>CATTCTTAAG[A/C]TTTTTTAAAC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAG</left_flank>
        <right_flank>TTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCAT</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTATGATAAGCATTTTTTCAGCATTTCTAAATTTGACTCTAATTATCTCGGCTCCTGTAAAAGGTATCAAAAATTTGTCAACTAATAAAGTGTTTATCGTAAAACATTAAAATTTTATCAGTTGATAACTTTTTGATATCTTCTACAGTAA</canonical>
            <polymorphic>CTTTTTTTGGTTTTTTTTTTCGGAGTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGMTTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTATGATAAGCATTTTTTCAGCATTTCTAAATTTGACTCTAATTATCTCGGCTCCTGTAAAAGGTATCAAAAATTTGTCAACTAATAAAGTGTTTATCGTAAAACATTAAAATTTTATCAGTTGATAACTTTTTGATATCTTCTACAGTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGTTCCTGAACTAGCCAATTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGGAATTTTTCCAATACATTTT</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>AGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCAT</canonical_amplicon>
		<polymorphic_amplicon>AGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGMTTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39729</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>419516</contig_pos>
        <strand>+</strand>
        <context>TTTTCTTTCA[C/G]AATGTCTTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>TTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCA</left_flank>
        <right_flank>AATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAAT</right_flank>
        <qual_score>142</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTATGATAAGCATTTTTTCAGCATTTCTAAATTTGACTCTAATTATCTCGGCTCCTGTAAAAGGTATCAAAAATTTGTCAACTAATAAAGTGTTTATCGTAAAACATTAAAATTTTATCAGTTGATAACTTTTTGATATCTTCTACAGTAATCGAGATCAATTGGGTTAAAGCTG</canonical>
            <polymorphic>GTTTTCGATTTTCTGATATCTCAAAAATTCAGAAAATGTCCCATCTTTACTATTTTATTTATCTACCAAGACCAGGTGCAAAATCTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCASAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTATGATAAGCATTTTTTCAGCATTTCTAAATTTGACTCTAATTATCTCGGCTCCTGTAAAAGGTATCAAAAATTTGTCAACTAATAAAGTGTTTATCGTAAAACATTAAAATTTTATCAGTTGATAACTTTTTGATATCTTCTACAGTAATCGAGATCAATTGGGTTAAAGCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>465 191 167 110 36 17 14</canonical_bands>
                <polymorphic_bands>465 191 167 146 17 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTCCTGAACTAGCCAATTTT</pcr_primer_p1>
		<pcr_primer_p2>ATGGAATTTTTCCAATACATTTT</pcr_primer_p2>
		<pcr_amplicon_size>226</pcr_amplicon_size>
		<canonical_amplicon>AGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCAT</canonical_amplicon>
		<polymorphic_amplicon>AGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCASAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39730</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>419600</contig_pos>
        <strand></strand>
        <context>actttgagct[C/T]atttatctag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCT</left_flank>
        <right_flank>ATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTATGATAAGCATTTTTTCAGCATTTCTAAATTTGACTCTAATTATCTCGGCTCCTGTAAAAGGTATCAAAAATTTGTCAACTAATAAAGTGTTTATCGTAAAACATTAAAATTTTATCAGTTGATAACTTTTTGATATCTTCTACAGTAATCGAGATCAATTGGGTTAAAGCTGAAGACGTCGCCGGCAGCAACCGACCGCCTTCTTTGCGTCCTAACCATACATATTTTTGTACAATACAATCTCTTTGCGCTCATA</canonical>
            <polymorphic>CTCTTTTCGAAAAAAAAAATGTATTTTATCGAATATGTTCAGCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTYATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTATGATAAGCATTTTTTCAGCATTTCTAAATTTGACTCTAATTATCTCGGCTCCTGTAAAAGGTATCAAAAATTTGTCAACTAATAAAGTGTTTATCGTAAAACATTAAAATTTTATCAGTTGATAACTTTTTGATATCTTCTACAGTAATCGAGATCAATTGGGTTAAAGCTGAAGACGTCGCCGGCAGCAACCGACCGCCTTCTTTGCGTCCTAACCATACATATTTTTGTACAATACAATCTCTTTGCGCTCATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GWGCWC</site>
                <isoschizomers>
                    <enzyme>Alw21I</enzyme>
                    <enzyme>AspHI</enzyme>
                    <enzyme>Bbv12I</enzyme>
                    <enzyme>BsiHKAI</enzyme>
                    <enzyme>HgiAI</enzyme>
                </isoschizomers>
                <canonical_bands>501 356 143</canonical_bands>
                <polymorphic_bands>857 143</polymorphic_bands>
            </assay>
            <assay>
                <site>GRGCYC</site>
                <isoschizomers>
                    <enzyme>BanII</enzyme>
                    <enzyme>Eco24I</enzyme>
                    <enzyme>EcoT38I</enzyme>
                    <enzyme>FriOI</enzyme>
                    <enzyme>HgiJII</enzyme>
                </isoschizomers>
                <canonical_bands>499 334 167</canonical_bands>
                <polymorphic_bands>666 334</polymorphic_bands>
            </assay>
            <assay>
                <site>GDGCHC</site>
                <isoschizomers>
                    <enzyme>BmyI</enzyme>
                    <enzyme>Bsp1286I</enzyme>
                    <enzyme>MhlI</enzyme>
                    <enzyme>SduI</enzyme>
                </isoschizomers>
                <canonical_bands>356 334 167 143</canonical_bands>
                <polymorphic_bands>523 334 143</polymorphic_bands>
            </assay>
            <assay>
                <site>GAGCTC</site>
                <isoschizomers>
                    <enzyme>Ecl136II</enzyme>
                    <enzyme>EcoICRI</enzyme>
                    <enzyme>Psp124BI</enzyme>
                    <enzyme>SacI</enzyme>
                    <enzyme>SstI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTAATTGCTTTTCATTGTGAGT</pcr_primer_p1>
		<pcr_primer_p2>GTATGGTTAGGACGCAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>539</pcr_amplicon_size>
		<canonical_amplicon>ATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTATGATAAGCATTTTTTCAGCATTTCTAAATTTGACTCTAATTATCTCGGCTCCTGTAAAAGGTATCAAAAATTTGTCAACTAATAAAGTGTTTATCGTAAAACATTAAAATTTTATCAGTTGATAACTTTTTGATATCTTCTACAGTAATCGAGATCAATTGGGTTAAAGCTGAAGACGTCGCCGGCAGCAACCGACCGCCTTCTTTGCGTCCTAACCATAC</canonical_amplicon>
		<polymorphic_amplicon>ATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTYATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTATGATAAGCATTTTTTCAGCATTTCTAAATTTGACTCTAATTATCTCGGCTCCTGTAAAAGGTATCAAAAATTTGTCAACTAATAAAGTGTTTATCGTAAAACATTAAAATTTTATCAGTTGATAACTTTTTGATATCTTCTACAGTAATCGAGATCAATTGGGTTAAAGCTGAAGACGTCGCCGGCAGCAACCGACCGCCTTCTTTGCGTCCTAACCATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39731</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>419641</contig_pos>
        <strand></strand>
        <context>aaagtagtca[A/G]ctgrtaaaat</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCA</left_flank>
        <right_flank>CTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTATGATAAGCATTTTTTCAGCATTTCTAAATTTGACTCTAATTATCTCGGCTCCTGTAAAAGGTATCAAAAATTTGTCAACTAATAAAGTGTTTATCGTAAAACATTAAAATTTTATCAGTTGATAACTTTTTGATATCTTCTACAGTAATCGAGATCAATTGGGTTAAAGCTGAAGACGTCGCCGGCAGCAACCGACCGCCTTCTTTGCGTCCTAACCATACATATTTTTGTACAATACAATCTCTTTGCGCTCATATAACTTGCAGTTTCTGCAACAGAAACCGCGTTGGATAGGTA</canonical>
            <polymorphic>GCTGGAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCARCTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTATGATAAGCATTTTTTCAGCATTTCTAAATTTGACTCTAATTATCTCGGCTCCTGTAAAAGGTATCAAAAATTTGTCAACTAATAAAGTGTTTATCGTAAAACATTAAAATTTTATCAGTTGATAACTTTTTGATATCTTCTACAGTAATCGAGATCAATTGGGTTAAAGCTGAAGACGTCGCCGGCAGCAACCGACCGCCTTCTTTGCGTCCTAACCATACATATTTTTGTACAATACAATCTCTTTGCGCTCATATAACTTGCAGTTTCTGCAACAGAAACCGCGTTGGATAGGTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>498 281 221</canonical_bands>
                <polymorphic_bands>779 221</polymorphic_bands>
            </assay>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>444 221 135 101 54 45</canonical_bands>
                <polymorphic_bands>489 221 135 101 54</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTAATTGCTTTTCATTGTGAGT</pcr_primer_p1>
		<pcr_primer_p2>GTATGGTTAGGACGCAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>539</pcr_amplicon_size>
		<canonical_amplicon>ATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTATGATAAGCATTTTTTCAGCATTTCTAAATTTGACTCTAATTATCTCGGCTCCTGTAAAAGGTATCAAAAATTTGTCAACTAATAAAGTGTTTATCGTAAAACATTAAAATTTTATCAGTTGATAACTTTTTGATATCTTCTACAGTAATCGAGATCAATTGGGTTAAAGCTGAAGACGTCGCCGGCAGCAACCGACCGCCTTCTTTGCGTCCTAACCATAC</canonical_amplicon>
		<polymorphic_amplicon>ATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCARCTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTATGATAAGCATTTTTTCAGCATTTCTAAATTTGACTCTAATTATCTCGGCTCCTGTAAAAGGTATCAAAAATTTGTCAACTAATAAAGTGTTTATCGTAAAACATTAAAATTTTATCAGTTGATAACTTTTTGATATCTTCTACAGTAATCGAGATCAATTGGGTTAAAGCTGAAGACGTCGCCGGCAGCAACCGACCGCCTTCTTTGCGTCCTAACCATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39732</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>419645</contig_pos>
        <strand></strand>
        <context>tagtcarctg[G/A]taaaatgttt</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>GAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTG</left_flank>
        <right_flank>TAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTATGATAAGCATTTTTTCAGCATTTCTAAATTTGACTCTAATTATCTCGGCTCCTGTAAAAGGTATCAAAAATTTGTCAACTAATAAAGTGTTTATCGTAAAACATTAAAATTTTATCAGTTGATAACTTTTTGATATCTTCTACAGTAATCGAGATCAATTGGGTTAAAGCTGAAGACGTCGCCGGCAGCAACCGACCGCCTTCTTTGCGTCCTAACCATACATATTTTTGTACAATACAATCTCTTTGCGCTCATATAACTTGCAGTTTCTGCAACAGAAACCGCGTTGGATAGGTAGTGA</canonical>
            <polymorphic>GAATTTTCAAAAATTCGTCACCTATTTCAATATTAATTCGATCTTTTGTCTACTCTTCTGTTCTCTCATTGAAATTTAAATTTATGAAATTCTGAGCACCGCGTAGTTAGCTAGAGCTGTGCTTTCTCCTACAAACATGCACACAACATGTGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGRTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTATGATAAGCATTTTTTCAGCATTTCTAAATTTGACTCTAATTATCTCGGCTCCTGTAAAAGGTATCAAAAATTTGTCAACTAATAAAGTGTTTATCGTAAAACATTAAAATTTTATCAGTTGATAACTTTTTGATATCTTCTACAGTAATCGAGATCAATTGGGTTAAAGCTGAAGACGTCGCCGGCAGCAACCGACCGCCTTCTTTGCGTCCTAACCATACATATTTTTGTACAATACAATCTCTTTGCGCTCATATAACTTGCAGTTTCTGCAACAGAAACCGCGTTGGATAGGTAGTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTAATTGCTTTTCATTGTGAGT</pcr_primer_p1>
		<pcr_primer_p2>GTATGGTTAGGACGCAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>539</pcr_amplicon_size>
		<canonical_amplicon>ATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTATGATAAGCATTTTTTCAGCATTTCTAAATTTGACTCTAATTATCTCGGCTCCTGTAAAAGGTATCAAAAATTTGTCAACTAATAAAGTGTTTATCGTAAAACATTAAAATTTTATCAGTTGATAACTTTTTGATATCTTCTACAGTAATCGAGATCAATTGGGTTAAAGCTGAAGACGTCGCCGGCAGCAACCGACCGCCTTCTTTGCGTCCTAACCATAC</canonical_amplicon>
		<polymorphic_amplicon>ATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGRTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTATGATAAGCATTTTTTCAGCATTTCTAAATTTGACTCTAATTATCTCGGCTCCTGTAAAAGGTATCAAAAATTTGTCAACTAATAAAGTGTTTATCGTAAAACATTAAAATTTTATCAGTTGATAACTTTTTGATATCTTCTACAGTAATCGAGATCAATTGGGTTAAAGCTGAAGACGTCGCCGGCAGCAACCGACCGCCTTCTTTGCGTCCTAACCATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39733</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>419795</contig_pos>
        <strand></strand>
        <context>atctagattc[A/C]ttgaacagac</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTC</left_flank>
        <right_flank>TTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTAT</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTATGATAAGCATTTTTTCAGCATTTCTAAATTTGACTCTAATTATCTCGGCTCCTGTAAAAGGTATCAAAAATTTGTCAACTAATAAAGTGTTTATCGTAAAACATTAAAATTTTATCAGTTGATAACTTTTTGATATCTTCTACAGTAATCGAGATCAATTGGGTTAAAGCTGAAGACGTCGCCGGCAGCAACCGACCGCCTTCTTTGCGTCCTAACCATACATATTTTTGTACAATACAATCTCTTTGCGCTCATATAACTTGCAGTTTCTGCAACAGAAACCGCGTTGGATAGGTAGTGAGAGAGTGCAGAGAAAAAGAATTGATGACACGTTTTATATTTTTTTGGATTGTGCTGGCTGTATGAACGGAGAAAGATACGGCTTGTATGCCTTTTTTCTATGTGGCTTTTTTCCGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATT</canonical>
            <polymorphic>TGGTTTTTATTTTATATATATATGCTTTCTTTGAGAAACCAAAACTTTTTTCTGCTTTTTTTTAGTTCCTGAACTAGCCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCMTTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTATGATAAGCATTTTTTCAGCATTTCTAAATTTGACTCTAATTATCTCGGCTCCTGTAAAAGGTATCAAAAATTTGTCAACTAATAAAGTGTTTATCGTAAAACATTAAAATTTTATCAGTTGATAACTTTTTGATATCTTCTACAGTAATCGAGATCAATTGGGTTAAAGCTGAAGACGTCGCCGGCAGCAACCGACCGCCTTCTTTGCGTCCTAACCATACATATTTTTGTACAATACAATCTCTTTGCGCTCATATAACTTGCAGTTTCTGCAACAGAAACCGCGTTGGATAGGTAGTGAGAGAGTGCAGAGAAAAAGAATTGATGACACGTTTTATATTTTTTTGGATTGTGCTGGCTGTATGAACGGAGAAAGATACGGCTTGTATGCCTTTTTTCTATGTGGCTTTTTTCCGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTAATTGCTTTTCATTGTGAGT</pcr_primer_p1>
		<pcr_primer_p2>GTATGGTTAGGACGCAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>539</pcr_amplicon_size>
		<canonical_amplicon>ATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTATGATAAGCATTTTTTCAGCATTTCTAAATTTGACTCTAATTATCTCGGCTCCTGTAAAAGGTATCAAAAATTTGTCAACTAATAAAGTGTTTATCGTAAAACATTAAAATTTTATCAGTTGATAACTTTTTGATATCTTCTACAGTAATCGAGATCAATTGGGTTAAAGCTGAAGACGTCGCCGGCAGCAACCGACCGCCTTCTTTGCGTCCTAACCATAC</canonical_amplicon>
		<polymorphic_amplicon>ATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCMTTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTATGATAAGCATTTTTTCAGCATTTCTAAATTTGACTCTAATTATCTCGGCTCCTGTAAAAGGTATCAAAAATTTGTCAACTAATAAAGTGTTTATCGTAAAACATTAAAATTTTATCAGTTGATAACTTTTTGATATCTTCTACAGTAATCGAGATCAATTGGGTTAAAGCTGAAGACGTCGCCGGCAGCAACCGACCGCCTTCTTTGCGTCCTAACCATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39734</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>419872</contig_pos>
        <strand></strand>
        <context>gCatttctaa[A/C]tttgactcta</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>CTGATAAAATGTTACTGATATTATGATAAGCATTTTTTCAGCATTTCTAA</left_flank>
        <right_flank>TTTGACTCTAATTATCTCGGCTCCTGTAAAAGGTATCAAAAATTTGTCAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTATGATAAGCATTTTTTCAGCATTTCTAAATTTGACTCTAATTATCTCGGCTCCTGTAAAAGGTATCAAAAATTTGTCAACTAATAAAGTGTTTATCGTAAAACATTAAAATTTTATCAGTTGATAACTTTTTGATATCTTCTACAGTAATCGAGATCAATTGGGTTAAAGCTGAAGACGTCGCCGGCAGCAACCGACCGCCTTCTTTGCGTCCTAACCATACATATTTTTGTACAATACAATCTCTTTGCGCTCATATAACTTGCAGTTTCTGCAACAGAAACCGCGTTGGATAGGTAGTGAGAGAGTGCAGAGAAAAAGAATTGATGACACGTTTTATATTTTTTTGGATTGTGCTGGCTGTATGAACGGAGAAAGATACGGCTTGTATGCCTTTTTTCTATGTGGCTTTTTTCCGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAG</canonical>
            <polymorphic>CCAATTTTCCTTTTTTTTGGTTCAAAAATTTCTGAAAAATATGAAAATTTTGAAGAAAAAAAAATTGGGAAAAAGTTCCATTTTCCGGTTGAATTCTTTTGACTTATTGCATTCTTAAGATTTTTTAAACGATTTTTCTTTCAGAATGTCTTTAATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTATGATAAGCATTTTTTCAGCATTTCTAAMTTTGACTCTAATTATCTCGGCTCCTGTAAAAGGTATCAAAAATTTGTCAACTAATAAAGTGTTTATCGTAAAACATTAAAATTTTATCAGTTGATAACTTTTTGATATCTTCTACAGTAATCGAGATCAATTGGGTTAAAGCTGAAGACGTCGCCGGCAGCAACCGACCGCCTTCTTTGCGTCCTAACCATACATATTTTTGTACAATACAATCTCTTTGCGCTCATATAACTTGCAGTTTCTGCAACAGAAACCGCGTTGGATAGGTAGTGAGAGAGTGCAGAGAAAAAGAATTGATGACACGTTTTATATTTTTTTGGATTGTGCTGGCTGTATGAACGGAGAAAGATACGGCTTGTATGCCTTTTTTCTATGTGGCTTTTTTCCGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAGATTCTTAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>421 294 113 46 42 39 26 19</canonical_bands>
                <polymorphic_bands>421 336 113 46 39 26 19</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>294 209 163 62 49 47 39 31 29 24 19 17 11 4 2</canonical_bands>
                <polymorphic_bands>305 209 163 62 49 47 39 31 29 24 19 17 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTAATTGCTTTTCATTGTGAGT</pcr_primer_p1>
		<pcr_primer_p2>GTATGGTTAGGACGCAAAGA</pcr_primer_p2>
		<pcr_amplicon_size>539</pcr_amplicon_size>
		<canonical_amplicon>ATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTATGATAAGCATTTTTTCAGCATTTCTAAATTTGACTCTAATTATCTCGGCTCCTGTAAAAGGTATCAAAAATTTGTCAACTAATAAAGTGTTTATCGTAAAACATTAAAATTTTATCAGTTGATAACTTTTTGATATCTTCTACAGTAATCGAGATCAATTGGGTTAAAGCTGAAGACGTCGCCGGCAGCAACCGACCGCCTTCTTTGCGTCCTAACCATAC</canonical_amplicon>
		<polymorphic_amplicon>ATTAATTGCTTTTCATTGTGAGTCAGAACTCAAAAAAAATGTATTGGAAAAATTCCATCCCAAACTTTGAGCTCATTTATCTAGGTTCCTGCAAAAGATATCAAAAAGTAGTCAACTGGTAAAATGTTTATCATAAAACAATAAATATTTTATCAGTTTACTACTTTTTGATATCTCTTACAGTAACCGAGATAAATGAGGTCAAAGTTAGAGAGTTCTTGCACCTCTAAGTTAGGGGCTCTAACTTTAACTTGATTTATCTAGATTCATTGAACAGACATCAAAAAGTTGTGTACTGATAAAATGTTACTGATATTATGATAAGCATTTTTTCAGCATTTCTAAMTTTGACTCTAATTATCTCGGCTCCTGTAAAAGGTATCAAAAATTTGTCAACTAATAAAGTGTTTATCGTAAAACATTAAAATTTTATCAGTTGATAACTTTTTGATATCTTCTACAGTAATCGAGATCAATTGGGTTAAAGCTGAAGACGTCGCCGGCAGCAACCGACCGCCTTCTTTGCGTCCTAACCATAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39742</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>426225</contig_pos>
        <strand></strand>
        <context>gaaaatgtct[T/C]aaaatcctgc</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>ATTGAGCAAAAATTAACGTAAAATAGTCGAAAAAATGGCTGAAAATGTCT</left_flank>
        <right_flank>AAAATCCTGCTAATTTTATCCGGAAGAGTCTGAAAATTGGCTGAAAACTC</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GTTTCCACAACGAAGCGTGGTCTGTCCTCCTCCGTACCGTCCATTCGGTTTTGGAACGAACCCCAGAGCACCTTCTCGAAGAAATTGTCCTAGTCGACGATTTTTCGGATATGGACCATACGAAACGACCATTGGAGGAGTATATGTCACAGTTTGGGGGGAAGGTCAAGATTCTGAGAATGGAGAAACGAGAGGGATTGATTCGAGCACGTCTTCGAGGCGCTGCAATCGCTACCGGAGAGGTTCTGACGTATTTGGATTCACATTGCGAGTGTATGGAAGGTAAGAGAGTGGTGTTGGTCTTGAAAATTGTCTGAAAATGCTCAAAAATTGACGCTTAATCGTCTAGAAATGCTCAAATTTGGCTTAAAAAATAGACTAAAAATGTCCTGAAAACGCTTATAAATTGACTTAAAATCGTCTAAAAATCAGCTAACTTTTAGACCAAAATTGAGCAAAAATTAACGTAAAATAGTCGAAAAAATGGCTGAAAATGTCTTAAAATCCTGCTAATTTTATCCGGAAGAGTCTGAAAATTGGCTGAAAACTCAAAGTTTCGACTCGAAACTATCAAAATCGAGTTTCCCGTCACTTTTAACCGCTGCAAGCCAAATTTCAGCTCGCTAGCTCAATTTGTCGTAAAATTCGGTGCTTGGTCCGCAAACACTTTGATCTGCCCGGTGTTTGCAGACAAAACACCACATTTTACGAAAAATAAAGTTAGCGAGCTGAAAATTGGTTTCCAGGAGTAGAAAACGATGGGAAGCTCGTTTTTGATAGTTTCAAAGCGAAATTTCAGTTTATAGGAGATAAAAATGACTGAAAATAGGCTAGAAATCATTTAATTAAGACCTGGAATGACTAAAAATGCATCGAAAAATGGCCGAAAACGTAGAAATTTAGCTTAAAATGATCAAAAATTTTTGACTGATTTTTTGCAAAATTTCCGTAATTTTTCAGTTTGAAATAATACGAAAATGACAAAAAATTGCTCAAATTT</canonical>
            <polymorphic>GTTTCCACAACGAAGCGTGGTCTGTCCTCCTCCGTACCGTCCATTCGGTTTTGGAACGAACCCCAGAGCACCTTCTCGAAGAAATTGTCCTAGTCGACGATTTTTCGGATATGGACCATACGAAACGACCATTGGAGGAGTATATGTCACAGTTTGGGGGGAAGGTCAAGATTCTGAGAATGGAGAAACGAGAGGGATTGATTCGAGCACGTCTTCGAGGCGCTGCAATCGCTACCGGAGAGGTTCTGACGTATTTGGATTCACATTGCGAGTGTATGGAAGGTAAGAGAGTGGTGTTGGTCTTGAAAATTGTCTGAAAATGCTCAAAAATTGACGCTTAATCGTCTAGAAATGCTCAAATTTGGCTTAAAAAATAGACTAAAAATGTCCTGAAAACGCTTATAAATTGACTTAAAATCGTCTAAAAATCAGCTAACTTTTAGACCAAAATTGAGCAAAAATTAACGTAAAATAGTCGAAAAAATGGCTGAAAATGTCTYAAAATCCTGCTAATTTTATCCGGAAGAGTCTGAAAATTGGCTGAAAACTCAAAGTTTCGACTCGAAACTATCAAAATCGAGTTTCCCGTCACTTTTAACCGCTGCAAGCCAAATTTCAGCTCGCTAGCTCAATTTGTCGTAAAATTCGGTGCTTGGTCCGCAAACACTTTGATCTGCCCGGTGTTTGCAGACAAAACACCACATTTTACGAAAAATAAAGTTAGCGAGCTGAAAATTGGTTTCCAGGAGTAGAAAACGATGGGAAGCTCGTTTTTGATAGTTTCAAAGCGAAATTTCAGTTTATAGGAGATAAAAATGACTGAAAATAGGCTAGAAATCATTTAATTAAGACCTGGAATGACTAAAAATGCATCGAAAAATGGCCGAAAACGTAGAAATTTAGCTTAAAATGATCAAAAATTTTTGACTGATTTTTTGCAAAATTTCCGTAATTTTTCAGTTTGAAATAATACGAAAATGACAAAAAATTGCTCAAATTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>338 247 96 95 59 50 45 37 29 4</canonical_bands>
                <polymorphic_bands>338 247 133 95 59 50 45 29 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAAGAGAGTGGTGTTGGTCTT</pcr_primer_p1>
		<pcr_primer_p2>GAAATTTCGCTTTGAAACTATC</pcr_primer_p2>
		<pcr_amplicon_size>515</pcr_amplicon_size>
		<canonical_amplicon>GTAAGAGAGTGGTGTTGGTCTTGAAAATTGTCTGAAAATGCTCAAAAATTGACGCTTAATCGTCTAGAAATGCTCAAATTTGGCTTAAAAAATAGACTAAAAATGTCCTGAAAACGCTTATAAATTGACTTAAAATCGTCTAAAAATCAGCTAACTTTTAGACCAAAATTGAGCAAAAATTAACGTAAAATAGTCGAAAAAATGGCTGAAAATGTCTTAAAATCCTGCTAATTTTATCCGGAAGAGTCTGAAAATTGGCTGAAAACTCAAAGTTTCGACTCGAAACTATCAAAATCGAGTTTCCCGTCACTTTTAACCGCTGCAAGCCAAATTTCAGCTCGCTAGCTCAATTTGTCGTAAAATTCGGTGCTTGGTCCGCAAACACTTTGATCTGCCCGGTGTTTGCAGACAAAACACCACATTTTACGAAAAATAAAGTTAGCGAGCTGAAAATTGGTTTCCAGGAGTAGAAAACGATGGGAAGCTCGTTTTTGATAGTTTCAAAGCGAAATTTC</canonical_amplicon>
		<polymorphic_amplicon>GTAAGAGAGTGGTGTTGGTCTTGAAAATTGTCTGAAAATGCTCAAAAATTGACGCTTAATCGTCTAGAAATGCTCAAATTTGGCTTAAAAAATAGACTAAAAATGTCCTGAAAACGCTTATAAATTGACTTAAAATCGTCTAAAAATCAGCTAACTTTTAGACCAAAATTGAGCAAAAATTAACGTAAAATAGTCGAAAAAATGGCTGAAAATGTCTYAAAATCCTGCTAATTTTATCCGGAAGAGTCTGAAAATTGGCTGAAAACTCAAAGTTTCGACTCGAAACTATCAAAATCGAGTTTCCCGTCACTTTTAACCGCTGCAAGCCAAATTTCAGCTCGCTAGCTCAATTTGTCGTAAAATTCGGTGCTTGGTCCGCAAACACTTTGATCTGCCCGGTGTTTGCAGACAAAACACCACATTTTACGAAAAATAAAGTTAGCGAGCTGAAAATTGGTTTCCAGGAGTAGAAAACGATGGGAAGCTCGTTTTTGATAGTTTCAAAGCGAAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39743</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>426318</contig_pos>
        <strand></strand>
        <context>ttcccgtcac[T/A]tttwaccgct</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>GAAAACTCAAAGTTTCGACTCGAAACTATCAAAATCGAGTTTCCCGTCAC</left_flank>
        <right_flank>TTTAACCGCTGCAAGCCAAATTTCAGCTCGCTAGCTCAATTTGTCGTAAA</right_flank>
        <qual_score>42</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCGACGATTTTTCGGATATGGACCATACGAAACGACCATTGGAGGAGTATATGTCACAGTTTGGGGGGAAGGTCAAGATTCTGAGAATGGAGAAACGAGAGGGATTGATTCGAGCACGTCTTCGAGGCGCTGCAATCGCTACCGGAGAGGTTCTGACGTATTTGGATTCACATTGCGAGTGTATGGAAGGTAAGAGAGTGGTGTTGGTCTTGAAAATTGTCTGAAAATGCTCAAAAATTGACGCTTAATCGTCTAGAAATGCTCAAATTTGGCTTAAAAAATAGACTAAAAATGTCCTGAAAACGCTTATAAATTGACTTAAAATCGTCTAAAAATCAGCTAACTTTTAGACCAAAATTGAGCAAAAATTAACGTAAAATAGTCGAAAAAATGGCTGAAAATGTCTTAAAATCCTGCTAATTTTATCCGGAAGAGTCTGAAAATTGGCTGAAAACTCAAAGTTTCGACTCGAAACTATCAAAATCGAGTTTCCCGTCACTTTTAACCGCTGCAAGCCAAATTTCAGCTCGCTAGCTCAATTTGTCGTAAAATTCGGTGCTTGGTCCGCAAACACTTTGATCTGCCCGGTGTTTGCAGACAAAACACCACATTTTACGAAAAATAAAGTTAGCGAGCTGAAAATTGGTTTCCAGGAGTAGAAAACGATGGGAAGCTCGTTTTTGATAGTTTCAAAGCGAAATTTCAGTTTATAGGAGATAAAAATGACTGAAAATAGGCTAGAAATCATTTAATTAAGACCTGGAATGACTAAAAATGCATCGAAAAATGGCCGAAAACGTAGAAATTTAGCTTAAAATGATCAAAAATTTTTGACTGATTTTTTGCAAAATTTCCGTAATTTTTCAGTTTGAAATAATACGAAAATGACAAAAAATTGCTCAAATTTGGCTTAGAAAATGAGTAAAAATTAACTAATTTTGAATTAAACTAAATTAGAAATGACTGAAATAGACCAAATTTGACTAAAAATATCTGAAAA</canonical>
            <polymorphic>TCGACGATTTTTCGGATATGGACCATACGAAACGACCATTGGAGGAGTATATGTCACAGTTTGGGGGGAAGGTCAAGATTCTGAGAATGGAGAAACGAGAGGGATTGATTCGAGCACGTCTTCGAGGCGCTGCAATCGCTACCGGAGAGGTTCTGACGTATTTGGATTCACATTGCGAGTGTATGGAAGGTAAGAGAGTGGTGTTGGTCTTGAAAATTGTCTGAAAATGCTCAAAAATTGACGCTTAATCGTCTAGAAATGCTCAAATTTGGCTTAAAAAATAGACTAAAAATGTCCTGAAAACGCTTATAAATTGACTTAAAATCGTCTAAAAATCAGCTAACTTTTAGACCAAAATTGAGCAAAAATTAACGTAAAATAGTCGAAAAAATGGCTGAAAATGTCTTAAAATCCTGCTAATTTTATCCGGAAGAGTCTGAAAATTGGCTGAAAACTCAAAGTTTCGACTCGAAACTATCAAAATCGAGTTTCCCGTCACWTTTAACCGCTGCAAGCCAAATTTCAGCTCGCTAGCTCAATTTGTCGTAAAATTCGGTGCTTGGTCCGCAAACACTTTGATCTGCCCGGTGTTTGCAGACAAAACACCACATTTTACGAAAAATAAAGTTAGCGAGCTGAAAATTGGTTTCCAGGAGTAGAAAACGATGGGAAGCTCGTTTTTGATAGTTTCAAAGCGAAATTTCAGTTTATAGGAGATAAAAATGACTGAAAATAGGCTAGAAATCATTTAATTAAGACCTGGAATGACTAAAAATGCATCGAAAAATGGCCGAAAACGTAGAAATTTAGCTTAAAATGATCAAAAATTTTTGACTGATTTTTTGCAAAATTTCCGTAATTTTTCAGTTTGAAATAATACGAAAATGACAAAAAATTGCTCAAATTTGGCTTAGAAAATGAGTAAAAATTAACTAATTTTGAATTAAACTAAATTAGAAATGACTGAAATAGACCAAATTTGACTAAAAATATCTGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAAGAGAGTGGTGTTGGTCTT</pcr_primer_p1>
		<pcr_primer_p2>GAAATTTCGCTTTGAAACTATC</pcr_primer_p2>
		<pcr_amplicon_size>515</pcr_amplicon_size>
		<canonical_amplicon>GTAAGAGAGTGGTGTTGGTCTTGAAAATTGTCTGAAAATGCTCAAAAATTGACGCTTAATCGTCTAGAAATGCTCAAATTTGGCTTAAAAAATAGACTAAAAATGTCCTGAAAACGCTTATAAATTGACTTAAAATCGTCTAAAAATCAGCTAACTTTTAGACCAAAATTGAGCAAAAATTAACGTAAAATAGTCGAAAAAATGGCTGAAAATGTCTTAAAATCCTGCTAATTTTATCCGGAAGAGTCTGAAAATTGGCTGAAAACTCAAAGTTTCGACTCGAAACTATCAAAATCGAGTTTCCCGTCACTTTTAACCGCTGCAAGCCAAATTTCAGCTCGCTAGCTCAATTTGTCGTAAAATTCGGTGCTTGGTCCGCAAACACTTTGATCTGCCCGGTGTTTGCAGACAAAACACCACATTTTACGAAAAATAAAGTTAGCGAGCTGAAAATTGGTTTCCAGGAGTAGAAAACGATGGGAAGCTCGTTTTTGATAGTTTCAAAGCGAAATTTC</canonical_amplicon>
		<polymorphic_amplicon>GTAAGAGAGTGGTGTTGGTCTTGAAAATTGTCTGAAAATGCTCAAAAATTGACGCTTAATCGTCTAGAAATGCTCAAATTTGGCTTAAAAAATAGACTAAAAATGTCCTGAAAACGCTTATAAATTGACTTAAAATCGTCTAAAAATCAGCTAACTTTTAGACCAAAATTGAGCAAAAATTAACGTAAAATAGTCGAAAAAATGGCTGAAAATGTCTTAAAATCCTGCTAATTTTATCCGGAAGAGTCTGAAAATTGGCTGAAAACTCAAAGTTTCGACTCGAAACTATCAAAATCGAGTTTCCCGTCACWTTTAACCGCTGCAAGCCAAATTTCAGCTCGCTAGCTCAATTTGTCGTAAAATTCGGTGCTTGGTCCGCAAACACTTTGATCTGCCCGGTGTTTGCAGACAAAACACCACATTTTACGAAAAATAAAGTTAGCGAGCTGAAAATTGGTTTCCAGGAGTAGAAAACGATGGGAAGCTCGTTTTTGATAGTTTCAAAGCGAAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39744</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>426322</contig_pos>
        <strand></strand>
        <context>cgtcacwttt[A/T]accgctgcaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACTCAAAGTTTCGACTCGAAACTATCAAAATCGAGTTTCCCGTCACTTTT</left_flank>
        <right_flank>ACCGCTGCAAGCCAAATTTCAGCTCGCTAGCTCAATTTGTCGTAAAATTC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGATTTTTCGGATATGGACCATACGAAACGACCATTGGAGGAGTATATGTCACAGTTTGGGGGGAAGGTCAAGATTCTGAGAATGGAGAAACGAGAGGGATTGATTCGAGCACGTCTTCGAGGCGCTGCAATCGCTACCGGAGAGGTTCTGACGTATTTGGATTCACATTGCGAGTGTATGGAAGGTAAGAGAGTGGTGTTGGTCTTGAAAATTGTCTGAAAATGCTCAAAAATTGACGCTTAATCGTCTAGAAATGCTCAAATTTGGCTTAAAAAATAGACTAAAAATGTCCTGAAAACGCTTATAAATTGACTTAAAATCGTCTAAAAATCAGCTAACTTTTAGACCAAAATTGAGCAAAAATTAACGTAAAATAGTCGAAAAAATGGCTGAAAATGTCTTAAAATCCTGCTAATTTTATCCGGAAGAGTCTGAAAATTGGCTGAAAACTCAAAGTTTCGACTCGAAACTATCAAAATCGAGTTTCCCGTCACTTTTAACCGCTGCAAGCCAAATTTCAGCTCGCTAGCTCAATTTGTCGTAAAATTCGGTGCTTGGTCCGCAAACACTTTGATCTGCCCGGTGTTTGCAGACAAAACACCACATTTTACGAAAAATAAAGTTAGCGAGCTGAAAATTGGTTTCCAGGAGTAGAAAACGATGGGAAGCTCGTTTTTGATAGTTTCAAAGCGAAATTTCAGTTTATAGGAGATAAAAATGACTGAAAATAGGCTAGAAATCATTTAATTAAGACCTGGAATGACTAAAAATGCATCGAAAAATGGCCGAAAACGTAGAAATTTAGCTTAAAATGATCAAAAATTTTTGACTGATTTTTTGCAAAATTTCCGTAATTTTTCAGTTTGAAATAATACGAAAATGACAAAAAATTGCTCAAATTTGGCTTAGAAAATGAGTAAAAATTAACTAATTTTGAATTAAACTAAATTAGAAATGACTGAAATAGACCAAATTTGACTAAAAATATCTGAAAATAGA</canonical>
            <polymorphic>CGATTTTTCGGATATGGACCATACGAAACGACCATTGGAGGAGTATATGTCACAGTTTGGGGGGAAGGTCAAGATTCTGAGAATGGAGAAACGAGAGGGATTGATTCGAGCACGTCTTCGAGGCGCTGCAATCGCTACCGGAGAGGTTCTGACGTATTTGGATTCACATTGCGAGTGTATGGAAGGTAAGAGAGTGGTGTTGGTCTTGAAAATTGTCTGAAAATGCTCAAAAATTGACGCTTAATCGTCTAGAAATGCTCAAATTTGGCTTAAAAAATAGACTAAAAATGTCCTGAAAACGCTTATAAATTGACTTAAAATCGTCTAAAAATCAGCTAACTTTTAGACCAAAATTGAGCAAAAATTAACGTAAAATAGTCGAAAAAATGGCTGAAAATGTCTTAAAATCCTGCTAATTTTATCCGGAAGAGTCTGAAAATTGGCTGAAAACTCAAAGTTTCGACTCGAAACTATCAAAATCGAGTTTCCCGTCACTTTTWACCGCTGCAAGCCAAATTTCAGCTCGCTAGCTCAATTTGTCGTAAAATTCGGTGCTTGGTCCGCAAACACTTTGATCTGCCCGGTGTTTGCAGACAAAACACCACATTTTACGAAAAATAAAGTTAGCGAGCTGAAAATTGGTTTCCAGGAGTAGAAAACGATGGGAAGCTCGTTTTTGATAGTTTCAAAGCGAAATTTCAGTTTATAGGAGATAAAAATGACTGAAAATAGGCTAGAAATCATTTAATTAAGACCTGGAATGACTAAAAATGCATCGAAAAATGGCCGAAAACGTAGAAATTTAGCTTAAAATGATCAAAAATTTTTGACTGATTTTTTGCAAAATTTCCGTAATTTTTCAGTTTGAAATAATACGAAAATGACAAAAAATTGCTCAAATTTGGCTTAGAAAATGAGTAAAAATTAACTAATTTTGAATTAAACTAAATTAGAAATGACTGAAATAGACCAAATTTGACTAAAAATATCTGAAAATAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>247 241 117 96 60 59 50 45 37 29 15 4</canonical_bands>
                <polymorphic_bands>343 241 117 60 59 50 45 37 29 15 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAAGAGAGTGGTGTTGGTCTT</pcr_primer_p1>
		<pcr_primer_p2>GAAATTTCGCTTTGAAACTATC</pcr_primer_p2>
		<pcr_amplicon_size>515</pcr_amplicon_size>
		<canonical_amplicon>GTAAGAGAGTGGTGTTGGTCTTGAAAATTGTCTGAAAATGCTCAAAAATTGACGCTTAATCGTCTAGAAATGCTCAAATTTGGCTTAAAAAATAGACTAAAAATGTCCTGAAAACGCTTATAAATTGACTTAAAATCGTCTAAAAATCAGCTAACTTTTAGACCAAAATTGAGCAAAAATTAACGTAAAATAGTCGAAAAAATGGCTGAAAATGTCTTAAAATCCTGCTAATTTTATCCGGAAGAGTCTGAAAATTGGCTGAAAACTCAAAGTTTCGACTCGAAACTATCAAAATCGAGTTTCCCGTCACTTTTAACCGCTGCAAGCCAAATTTCAGCTCGCTAGCTCAATTTGTCGTAAAATTCGGTGCTTGGTCCGCAAACACTTTGATCTGCCCGGTGTTTGCAGACAAAACACCACATTTTACGAAAAATAAAGTTAGCGAGCTGAAAATTGGTTTCCAGGAGTAGAAAACGATGGGAAGCTCGTTTTTGATAGTTTCAAAGCGAAATTTC</canonical_amplicon>
		<polymorphic_amplicon>GTAAGAGAGTGGTGTTGGTCTTGAAAATTGTCTGAAAATGCTCAAAAATTGACGCTTAATCGTCTAGAAATGCTCAAATTTGGCTTAAAAAATAGACTAAAAATGTCCTGAAAACGCTTATAAATTGACTTAAAATCGTCTAAAAATCAGCTAACTTTTAGACCAAAATTGAGCAAAAATTAACGTAAAATAGTCGAAAAAATGGCTGAAAATGTCTTAAAATCCTGCTAATTTTATCCGGAAGAGTCTGAAAATTGGCTGAAAACTCAAAGTTTCGACTCGAAACTATCAAAATCGAGTTTCCCGTCACTTTTWACCGCTGCAAGCCAAATTTCAGCTCGCTAGCTCAATTTGTCGTAAAATTCGGTGCTTGGTCCGCAAACACTTTGATCTGCCCGGTGTTTGCAGACAAAACACCACATTTTACGAAAAATAAAGTTAGCGAGCTGAAAATTGGTTTCCAGGAGTAGAAAACGATGGGAAGCTCGTTTTTGATAGTTTCAAAGCGAAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39745</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>426333</contig_pos>
        <strand></strand>
        <context>accgctgcaa[G/A]ccaaatttca</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CGACTCGAAACTATCAAAATCGAGTTTCCCGTCACTTTTAACCGCTGCAA</left_flank>
        <right_flank>CCAAATTTCAGCTCGCTAGCTCAATTTGTCGTAAAATTCGGTGCTTGGTC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ATATGGACCATACGAAACGACCATTGGAGGAGTATATGTCACAGTTTGGGGGGAAGGTCAAGATTCTGAGAATGGAGAAACGAGAGGGATTGATTCGAGCACGTCTTCGAGGCGCTGCAATCGCTACCGGAGAGGTTCTGACGTATTTGGATTCACATTGCGAGTGTATGGAAGGTAAGAGAGTGGTGTTGGTCTTGAAAATTGTCTGAAAATGCTCAAAAATTGACGCTTAATCGTCTAGAAATGCTCAAATTTGGCTTAAAAAATAGACTAAAAATGTCCTGAAAACGCTTATAAATTGACTTAAAATCGTCTAAAAATCAGCTAACTTTTAGACCAAAATTGAGCAAAAATTAACGTAAAATAGTCGAAAAAATGGCTGAAAATGTCTTAAAATCCTGCTAATTTTATCCGGAAGAGTCTGAAAATTGGCTGAAAACTCAAAGTTTCGACTCGAAACTATCAAAATCGAGTTTCCCGTCACTTTTAACCGCTGCAAGCCAAATTTCAGCTCGCTAGCTCAATTTGTCGTAAAATTCGGTGCTTGGTCCGCAAACACTTTGATCTGCCCGGTGTTTGCAGACAAAACACCACATTTTACGAAAAATAAAGTTAGCGAGCTGAAAATTGGTTTCCAGGAGTAGAAAACGATGGGAAGCTCGTTTTTGATAGTTTCAAAGCGAAATTTCAGTTTATAGGAGATAAAAATGACTGAAAATAGGCTAGAAATCATTTAATTAAGACCTGGAATGACTAAAAATGCATCGAAAAATGGCCGAAAACGTAGAAATTTAGCTTAAAATGATCAAAAATTTTTGACTGATTTTTTGCAAAATTTCCGTAATTTTTCAGTTTGAAATAATACGAAAATGACAAAAAATTGCTCAAATTTGGCTTAGAAAATGAGTAAAAATTAACTAATTTTGAATTAAACTAAATTAGAAATGACTGAAATAGACCAAATTTGACTAAAAATATCTGAAAATAGACTAAAAGTCAT</canonical>
            <polymorphic>ATATGGACCATACGAAACGACCATTGGAGGAGTATATGTCACAGTTTGGGGGGAAGGTCAAGATTCTGAGAATGGAGAAACGAGAGGGATTGATTCGAGCACGTCTTCGAGGCGCTGCAATCGCTACCGGAGAGGTTCTGACGTATTTGGATTCACATTGCGAGTGTATGGAAGGTAAGAGAGTGGTGTTGGTCTTGAAAATTGTCTGAAAATGCTCAAAAATTGACGCTTAATCGTCTAGAAATGCTCAAATTTGGCTTAAAAAATAGACTAAAAATGTCCTGAAAACGCTTATAAATTGACTTAAAATCGTCTAAAAATCAGCTAACTTTTAGACCAAAATTGAGCAAAAATTAACGTAAAATAGTCGAAAAAATGGCTGAAAATGTCTTAAAATCCTGCTAATTTTATCCGGAAGAGTCTGAAAATTGGCTGAAAACTCAAAGTTTCGACTCGAAACTATCAAAATCGAGTTTCCCGTCACTTTTAACCGCTGCAARCCAAATTTCAGCTCGCTAGCTCAATTTGTCGTAAAATTCGGTGCTTGGTCCGCAAACACTTTGATCTGCCCGGTGTTTGCAGACAAAACACCACATTTTACGAAAAATAAAGTTAGCGAGCTGAAAATTGGTTTCCAGGAGTAGAAAACGATGGGAAGCTCGTTTTTGATAGTTTCAAAGCGAAATTTCAGTTTATAGGAGATAAAAATGACTGAAAATAGGCTAGAAATCATTTAATTAAGACCTGGAATGACTAAAAATGCATCGAAAAATGGCCGAAAACGTAGAAATTTAGCTTAAAATGATCAAAAATTTTTGACTGATTTTTTGCAAAATTTCCGTAATTTTTCAGTTTGAAATAATACGAAAATGACAAAAAATTGCTCAAATTTGGCTTAGAAAATGAGTAAAAATTAACTAATTTTGAATTAAACTAAATTAGAAATGACTGAAATAGACCAAATTTGACTAAAAATATCTGAAAATAGACTAAAAGTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNNGC</site>
                <isoschizomers>
                    <enzyme>BstC8I</enzyme>
                    <enzyme>Cac8I</enzyme>
                </isoschizomers>
                <canonical_bands>498 382 101 15 4</canonical_bands>
                <polymorphic_bands>513 382 101 4</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>257 106 101 99 68 67 64 55 53 53 38 20 11 8</canonical_bands>
                <polymorphic_bands>257 106 101 99 79 67 64 55 53 53 38 20 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTAAGAGAGTGGTGTTGGTCTT</pcr_primer_p1>
		<pcr_primer_p2>GAAATTTCGCTTTGAAACTATC</pcr_primer_p2>
		<pcr_amplicon_size>515</pcr_amplicon_size>
		<canonical_amplicon>GTAAGAGAGTGGTGTTGGTCTTGAAAATTGTCTGAAAATGCTCAAAAATTGACGCTTAATCGTCTAGAAATGCTCAAATTTGGCTTAAAAAATAGACTAAAAATGTCCTGAAAACGCTTATAAATTGACTTAAAATCGTCTAAAAATCAGCTAACTTTTAGACCAAAATTGAGCAAAAATTAACGTAAAATAGTCGAAAAAATGGCTGAAAATGTCTTAAAATCCTGCTAATTTTATCCGGAAGAGTCTGAAAATTGGCTGAAAACTCAAAGTTTCGACTCGAAACTATCAAAATCGAGTTTCCCGTCACTTTTAACCGCTGCAAGCCAAATTTCAGCTCGCTAGCTCAATTTGTCGTAAAATTCGGTGCTTGGTCCGCAAACACTTTGATCTGCCCGGTGTTTGCAGACAAAACACCACATTTTACGAAAAATAAAGTTAGCGAGCTGAAAATTGGTTTCCAGGAGTAGAAAACGATGGGAAGCTCGTTTTTGATAGTTTCAAAGCGAAATTTC</canonical_amplicon>
		<polymorphic_amplicon>GTAAGAGAGTGGTGTTGGTCTTGAAAATTGTCTGAAAATGCTCAAAAATTGACGCTTAATCGTCTAGAAATGCTCAAATTTGGCTTAAAAAATAGACTAAAAATGTCCTGAAAACGCTTATAAATTGACTTAAAATCGTCTAAAAATCAGCTAACTTTTAGACCAAAATTGAGCAAAAATTAACGTAAAATAGTCGAAAAAATGGCTGAAAATGTCTTAAAATCCTGCTAATTTTATCCGGAAGAGTCTGAAAATTGGCTGAAAACTCAAAGTTTCGACTCGAAACTATCAAAATCGAGTTTCCCGTCACTTTTAACCGCTGCAARCCAAATTTCAGCTCGCTAGCTCAATTTGTCGTAAAATTCGGTGCTTGGTCCGCAAACACTTTGATCTGCCCGGTGTTTGCAGACAAAACACCACATTTTACGAAAAATAAAGTTAGCGAGCTGAAAATTGGTTTCCAGGAGTAGAAAACGATGGGAAGCTCGTTTTTGATAGTTTCAAAGCGAAATTTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39749</snp_id>
        <super_contig>c014300993.Contig2</super_contig>
        <contig_pos>429485</contig_pos>
        <strand></strand>
        <context>GATAACATTT[T/A]TCCGGAACTC</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TCGTTCGGATTTGGGCTGCAAATCGTTCAAATGGTACCTGGATAACATTT</left_flank>
        <right_flank>TCCGGAACTCTTTGTTCCCGGAGAATCTGGCCCTAAGGAGAGGTACGTCN</right_flank>
        <qual_score>37</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTAGTTCATTTTCAGCCATTTTTGAGTGATTTTTATGCCATTTTTGACTGATTTTAAGCCAATCTTGACGGATTTTAAGTCATTGTAGCCTATTTTAATCCGATTTCGACTGATTTTAAGTCATTTTCAACCGATTTAATAGCATTTTTAACCTATTTTAAGCCAATTTTAAGCCATTTTTAGCCACTTTTAGTTCATTTTCAGCCTATTTTGAGTGATTTTCAGCCTATTTTAGCTCATTTTCAGCCATTTTTGTGGGATTTTAAGTCATTTTTGGCTGATTTTAAACGTTTTTTGTTTAAAACTAATTTTAGTTATTTTTACGAATTTTAGGCACTTTTCAAACTATGCTTAGCCATTTTCAGCTCATATTTTCAACCGATTTAGTCACCCATTTTTCGCCATTTTCAGGGCGATTTCGGAGATGTCTCTGCCAGAAAGAAGCTTCGTTCGGATTTGGGCTGCAAATCGTTCAAATGGTACCTGGATAACATTTTTCCGGAACTCTTTGTTCCCGGAGAATCTGGCCCTAAGGAGAGGTACGTCNNNNNNNNNNAATTCGAGCTCGGTACCCATTTTTCGCCTTTTAGGGCGATTTCGGAGATGTCTCTGCCAGAAAGAAGCTTCGTTCGGATTTGGGCTGCAAATCGTTCAAATGGTACCTGGATAACATTTTTCCGGAACTCTTTGTTCCCGGAGAATCTGTGGCCAAAGGAGAGGTACGTCTTCTTTTTTTGAAATTTTTGGAAAAAAAATTATCTAAAAAATTGAATATTTCTAGCTCGAAAATAGCTCTAAAAATTGGTTTTTTTCATTTTTAATTACTACTCTAATTGCCTAATTAACTAGATAATTAACTAATTAAAAACCTAATTACCGCCCCCATGGGAAGCCTTTATTTTATCACCTAATCACTCTTATCCTGATTTTTCATTTTTGTCCACGTATCACCTCATTTTTGGTTAATTGGGTTTCAATTGAAAAAAGATAATTAGGG</canonical>
            <polymorphic>ATTTTAGTTCATTTTCAGCCATTTTTGAGTGATTTTTATGCCATTTTTGACTGATTTTAAGCCAATCTTGACGGATTTTAAGTCATTGTAGCCTATTTTAATCCGATTTCGACTGATTTTAAGTCATTTTCAACCGATTTAATAGCATTTTTAACCTATTTTAAGCCAATTTTAAGCCATTTTTAGCCACTTTTAGTTCATTTTCAGCCTATTTTGAGTGATTTTCAGCCTATTTTAGCTCATTTTCAGCCATTTTTGTGGGATTTTAAGTCATTTTTGGCTGATTTTAAACGTTTTTTGTTTAAAACTAATTTTAGTTATTTTTACGAATTTTAGGCACTTTTCAAACTATGCTTAGCCATTTTCAGCTCATATTTTCAACCGATTTAGTCACCCATTTTTCGCCATTTTCAGGGCGATTTCGGAGATGTCTCTGCCAGAAAGAAGCTTCGTTCGGATTTGGGCTGCAAATCGTTCAAATGGTACCTGGATAACATTTWTCCGGAACTCTTTGTTCCCGGAGAATCTGGCCCTAAGGAGAGGTACGTCNNNNNNNNNNAATTCGAGCTCGGTACCCATTTTTCGCCTTTTAGGGCGATTTCGGAGATGTCTCTGCCAGAAAGAAGCTTCGTTCGGATTTGGGCTGCAAATCGTTCAAATGGTACCTGGATAACATTTTTCCGGAACTCTTTGTTCCCGGAGAATCTGTGGCCAAAGGAGAGGTACGTCTTCTTTTTTTGAAATTTTTGGAAAAAAAATTATCTAAAAAATTGAATATTTCTAGCTCGAAAATAGCTCTAAAAATTGGTTTTTTTCATTTTTAATTACTACTCTAATTGCCTAATTAACTAGATAATTAACTAATTAAAAACCTAATTACCGCCCCCATGGGAAGCCTTTATTTTATCACCTAATCACTCTTATCCTGATTTTTCATTTTTGTCCACGTATCACCTCATTTTTGGTTAATTGGGTTTCAATTGAAAAAAGATAATTAGGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATGTCTCTGCCAGAAAGAAG</pcr_primer_p1>
		<pcr_primer_p2>GTTATCCAGGTACCATTTGAAC</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>ATGTCTCTGCCAGAAAGAAGCTTCGTTCGGATTTGGGCTGCAAATCGTTCAAATGGTACCTGGATAACATTTTTCCGGAACTCTTTGTTCCCGGAGAATCTGGCCCTAAGGAGAGGTACGTCNNNNNNNNNNAATTCGAGCTCGGTACCCATTTTTCGCCTTTTAGGGCGATTTCGGAGATGTCTCTGCCAGAAAGAAGCTTCGTTCGGATTTGGGCTGCAAATCGTTCAAATGGTACCTGGATAAC</canonical_amplicon>
		<polymorphic_amplicon>ATGTCTCTGCCAGAAAGAAGCTTCGTTCGGATTTGGGCTGCAAATCGTTCAAATGGTACCTGGATAACATTTWTCCGGAACTCTTTGTTCCCGGAGAATCTGGCCCTAAGGAGAGGTACGTCNNNNNNNNNNAATTCGAGCTCGGTACCCATTTTTCGCCTTTTAGGGCGATTTCGGAGATGTCTCTGCCAGAAAGAAGCTTCGTTCGGATTTGGGCTGCAAATCGTTCAAATGGTACCTGGATAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39750</snp_id>
        <super_contig>c014301193.Contig1</super_contig>
        <contig_pos>8681</contig_pos>
        <strand></strand>
        <context>AAAGGTTTTT[T/A]GAGTTTTTKM</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>CGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTT</left_flank>
        <right_flank>GAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTCGAAAATTCAGAAATTCTGAAATTCAGAACTTTAGAAATTCAGAAATTCAGAAATTCTGAGGAATTCAGAAATTCGAAAATCCAGAAATTCTGATAAATTCTGAAATTCTGAAATTCTGAAATTTAGAAATTCAGAAATCCAGAAATTCTGAAATTCTGAAGTTCAGAAATTCGAGATTTCTGTAATTCTGAAACTTTTAAATTCTGAAATATTTAAGCTTTTAAAAATTCGAAATTTCGGAATTCTGGATTTCTTGAATTTTGGAATTCCGATATTCTTTTAAATTTGAAAAATTCTCGAATTCCGAAGATTAAAAATTTTAAACTTCTGAAGTTTTTTAGATTTTTAATTTTTTCTCAGCATTTTCAAATAACATTCGATATTCAAAAAATTAGAATTCCAGAATTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAAAAATTACTTTTTCTATTGAAACTTTGCATCCTTTTCAGAGATTTCATATTTTGCAAAACTTTCTAGAATTCTCGATTTCCTTTCACCACGTCTTCTCTCCCCACTAATTCAAAGATGTCATCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAA</canonical>
            <polymorphic>TTCGAAAATTCAGAAATTCTGAAATTCAGAACTTTAGAAATTCAGAAATTCAGAAATTCTGAGGAATTCAGAAATTCGAAAATCCAGAAATTCTGATAAATTCTGAAATTCTGAAATTCTGAAATTTAGAAATTCAGAAATCCAGAAATTCTGAAATTCTGAAGTTCAGAAATTCGAGATTTCTGTAATTCTGAAACTTTTAAATTCTGAAATATTTAAGCTTTTAAAAATTCGAAATTTCGGAATTCTGGATTTCTTGAATTTTGGAATTCCGATATTCTTTTAAATTTGAAAAATTCTCGAATTCCGAAGATTAAAAATTTTAAACTTCTGAAGTTTTTTAGATTTTTAATTTTTTCTCAGCATTTTCAAATAACATTCGATATTCAAAAAATTAGAATTCCAGAATTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTWGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAAAAATTACTTTTTCTATTGAAACTTTGCATCCTTTTCAGAGATTTCATATTTTGCAAAACTTTCTAGAATTCTCGATTTCCTTTCACCACGTCTTCTCTCCCCACTAATTCAAAGATGTCATCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAATTCATGTTTAGCAATA</pcr_primer_p1>
		<pcr_primer_p2>TTAGTGGAACAAGACATCAGACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAA</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTWGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39751</snp_id>
        <super_contig>c014301193.Contig1</super_contig>
        <contig_pos>8690</contig_pos>
        <strand>+</strand>
        <context>TWGAGTTTTT[G/T]MAAATTTGAA</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTT</left_flank>
        <right_flank>CAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGAAATTCTGAAATTCAGAACTTTAGAAATTCAGAAATTCAGAAATTCTGAGGAATTCAGAAATTCGAAAATCCAGAAATTCTGATAAATTCTGAAATTCTGAAATTCTGAAATTTAGAAATTCAGAAATCCAGAAATTCTGAAATTCTGAAGTTCAGAAATTCGAGATTTCTGTAATTCTGAAACTTTTAAATTCTGAAATATTTAAGCTTTTAAAAATTCGAAATTTCGGAATTCTGGATTTCTTGAATTTTGGAATTCCGATATTCTTTTAAATTTGAAAAATTCTCGAATTCCGAAGATTAAAAATTTTAAACTTCTGAAGTTTTTTAGATTTTTAATTTTTTCTCAGCATTTTCAAATAACATTCGATATTCAAAAAATTAGAATTCCAGAATTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAAAAATTACTTTTTCTATTGAAACTTTGCATCCTTTTCAGAGATTTCATATTTTGCAAAACTTTCTAGAATTCTCGATTTCCTTTCACCACGTCTTCTCTCCCCACTAATTCAAAGATGTCATCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAA</canonical>
            <polymorphic>TCAGAAATTCTGAAATTCAGAACTTTAGAAATTCAGAAATTCAGAAATTCTGAGGAATTCAGAAATTCGAAAATCCAGAAATTCTGATAAATTCTGAAATTCTGAAATTCTGAAATTTAGAAATTCAGAAATCCAGAAATTCTGAAATTCTGAAGTTCAGAAATTCGAGATTTCTGTAATTCTGAAACTTTTAAATTCTGAAATATTTAAGCTTTTAAAAATTCGAAATTTCGGAATTCTGGATTTCTTGAATTTTGGAATTCCGATATTCTTTTAAATTTGAAAAATTCTCGAATTCCGAAGATTAAAAATTTTAAACTTCTGAAGTTTTTTAGATTTTTAATTTTTTCTCAGCATTTTCAAATAACATTCGATATTCAAAAAATTAGAATTCCAGAATTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTKCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAAAAATTACTTTTTCTATTGAAACTTTGCATCCTTTTCAGAGATTTCATATTTTGCAAAACTTTCTAGAATTCTCGATTTCCTTTCACCACGTCTTCTCTCCCCACTAATTCAAAGATGTCATCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAATTCATGTTTAGCAATA</pcr_primer_p1>
		<pcr_primer_p2>TTAGTGGAACAAGACATCAGACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAA</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTKCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39752</snp_id>
        <super_contig>c014301193.Contig1</super_contig>
        <contig_pos>8691</contig_pos>
        <strand>+</strand>
        <context>WGAGTTTTTK[A/C]AAATTTGAAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTT</left_flank>
        <right_flank>AAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAGAAATTCTGAAATTCAGAACTTTAGAAATTCAGAAATTCAGAAATTCTGAGGAATTCAGAAATTCGAAAATCCAGAAATTCTGATAAATTCTGAAATTCTGAAATTCTGAAATTTAGAAATTCAGAAATCCAGAAATTCTGAAATTCTGAAGTTCAGAAATTCGAGATTTCTGTAATTCTGAAACTTTTAAATTCTGAAATATTTAAGCTTTTAAAAATTCGAAATTTCGGAATTCTGGATTTCTTGAATTTTGGAATTCCGATATTCTTTTAAATTTGAAAAATTCTCGAATTCCGAAGATTAAAAATTTTAAACTTCTGAAGTTTTTTAGATTTTTAATTTTTTCTCAGCATTTTCAAATAACATTCGATATTCAAAAAATTAGAATTCCAGAATTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAAAAATTACTTTTTCTATTGAAACTTTGCATCCTTTTCAGAGATTTCATATTTTGCAAAACTTTCTAGAATTCTCGATTTCCTTTCACCACGTCTTCTCTCCCCACTAATTCAAAGATGTCATCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAA</canonical>
            <polymorphic>CAGAAATTCTGAAATTCAGAACTTTAGAAATTCAGAAATTCAGAAATTCTGAGGAATTCAGAAATTCGAAAATCCAGAAATTCTGATAAATTCTGAAATTCTGAAATTCTGAAATTTAGAAATTCAGAAATCCAGAAATTCTGAAATTCTGAAGTTCAGAAATTCGAGATTTCTGTAATTCTGAAACTTTTAAATTCTGAAATATTTAAGCTTTTAAAAATTCGAAATTTCGGAATTCTGGATTTCTTGAATTTTGGAATTCCGATATTCTTTTAAATTTGAAAAATTCTCGAATTCCGAAGATTAAAAATTTTAAACTTCTGAAGTTTTTTAGATTTTTAATTTTTTCTCAGCATTTTCAAATAACATTCGATATTCAAAAAATTAGAATTCCAGAATTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTMAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAAAAATTACTTTTTCTATTGAAACTTTGCATCCTTTTCAGAGATTTCATATTTTGCAAAACTTTCTAGAATTCTCGATTTCCTTTCACCACGTCTTCTCTCCCCACTAATTCAAAGATGTCATCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAATTCATGTTTAGCAATA</pcr_primer_p1>
		<pcr_primer_p2>TTAGTGGAACAAGACATCAGACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAA</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTMAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39753</snp_id>
        <super_contig>c014301193.Contig1</super_contig>
        <contig_pos>8708</contig_pos>
        <strand></strand>
        <context>GAAAAATTCC[G/A]AAAAWTTTRA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>CAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCC</left_flank>
        <right_flank>AAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACA</right_flank>
        <qual_score>40</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGAACTTTAGAAATTCAGAAATTCAGAAATTCTGAGGAATTCAGAAATTCGAAAATCCAGAAATTCTGATAAATTCTGAAATTCTGAAATTCTGAAATTTAGAAATTCAGAAATCCAGAAATTCTGAAATTCTGAAGTTCAGAAATTCGAGATTTCTGTAATTCTGAAACTTTTAAATTCTGAAATATTTAAGCTTTTAAAAATTCGAAATTTCGGAATTCTGGATTTCTTGAATTTTGGAATTCCGATATTCTTTTAAATTTGAAAAATTCTCGAATTCCGAAGATTAAAAATTTTAAACTTCTGAAGTTTTTTAGATTTTTAATTTTTTCTCAGCATTTTCAAATAACATTCGATATTCAAAAAATTAGAATTCCAGAATTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAAAAATTACTTTTTCTATTGAAACTTTGCATCCTTTTCAGAGATTTCATATTTTGCAAAACTTTCTAGAATTCTCGATTTCCTTTCACCACGTCTTCTCTCCCCACTAATTCAAAGATGTCATCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGATT</canonical>
            <polymorphic>AGAACTTTAGAAATTCAGAAATTCAGAAATTCTGAGGAATTCAGAAATTCGAAAATCCAGAAATTCTGATAAATTCTGAAATTCTGAAATTCTGAAATTTAGAAATTCAGAAATCCAGAAATTCTGAAATTCTGAAGTTCAGAAATTCGAGATTTCTGTAATTCTGAAACTTTTAAATTCTGAAATATTTAAGCTTTTAAAAATTCGAAATTTCGGAATTCTGGATTTCTTGAATTTTGGAATTCCGATATTCTTTTAAATTTGAAAAATTCTCGAATTCCGAAGATTAAAAATTTTAAACTTCTGAAGTTTTTTAGATTTTTAATTTTTTCTCAGCATTTTCAAATAACATTCGATATTCAAAAAATTAGAATTCCAGAATTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCRAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAAAAATTACTTTTTCTATTGAAACTTTGCATCCTTTTCAGAGATTTCATATTTTGCAAAACTTTCTAGAATTCTCGATTTCCTTTCACCACGTCTTCTCTCCCCACTAATTCAAAGATGTCATCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>194 173 161 112 55 35 34 31 24 24 24 17 16 16 16 10 10 8 8 8 8 8 8</canonical_bands>
                <polymorphic_bands>306 173 161 55 35 34 31 24 24 24 17 16 16 16 10 10 8 8 8 8 8 8</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAATTCATGTTTAGCAATA</pcr_primer_p1>
		<pcr_primer_p2>TTAGTGGAACAAGACATCAGACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAA</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCRAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39754</snp_id>
        <super_contig>c014301193.Contig1</super_contig>
        <contig_pos>8713</contig_pos>
        <strand>+</strand>
        <context>ATTCCRAAAA[A/T]TTTRAGAATY</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAA</left_flank>
        <right_flank>TTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTAGAAATTCAGAAATTCAGAAATTCTGAGGAATTCAGAAATTCGAAAATCCAGAAATTCTGATAAATTCTGAAATTCTGAAATTCTGAAATTTAGAAATTCAGAAATCCAGAAATTCTGAAATTCTGAAGTTCAGAAATTCGAGATTTCTGTAATTCTGAAACTTTTAAATTCTGAAATATTTAAGCTTTTAAAAATTCGAAATTTCGGAATTCTGGATTTCTTGAATTTTGGAATTCCGATATTCTTTTAAATTTGAAAAATTCTCGAATTCCGAAGATTAAAAATTTTAAACTTCTGAAGTTTTTTAGATTTTTAATTTTTTCTCAGCATTTTCAAATAACATTCGATATTCAAAAAATTAGAATTCCAGAATTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAAAAATTACTTTTTCTATTGAAACTTTGCATCCTTTTCAGAGATTTCATATTTTGCAAAACTTTCTAGAATTCTCGATTTCCTTTCACCACGTCTTCTCTCCCCACTAATTCAAAGATGTCATCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGATTAAAAT</canonical>
            <polymorphic>TTTAGAAATTCAGAAATTCAGAAATTCTGAGGAATTCAGAAATTCGAAAATCCAGAAATTCTGATAAATTCTGAAATTCTGAAATTCTGAAATTTAGAAATTCAGAAATCCAGAAATTCTGAAATTCTGAAGTTCAGAAATTCGAGATTTCTGTAATTCTGAAACTTTTAAATTCTGAAATATTTAAGCTTTTAAAAATTCGAAATTTCGGAATTCTGGATTTCTTGAATTTTGGAATTCCGATATTCTTTTAAATTTGAAAAATTCTCGAATTCCGAAGATTAAAAATTTTAAACTTCTGAAGTTTTTTAGATTTTTAATTTTTTCTCAGCATTTTCAAATAACATTCGATATTCAAAAAATTAGAATTCCAGAATTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAWTTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAAAAATTACTTTTTCTATTGAAACTTTGCATCCTTTTCAGAGATTTCATATTTTGCAAAACTTTCTAGAATTCTCGATTTCCTTTCACCACGTCTTCTCTCCCCACTAATTCAAAGATGTCATCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGATTAAAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>173 110 106 94 80 33 32 32 26 19 19 18 16 16 16 16 16 10 10 10 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 6 6</canonical_bands>
                <polymorphic_bands>173 110 106 94 80 33 32 32 29 26 19 18 16 16 16 16 16 10 10 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 6 6</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>92 65 62 57 49 42 40 39 39 33 32 32 26 19 19 18 16 16 16 16 16 16 16 16 10 10 10 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 6 6 6 6</canonical_bands>
                <polymorphic_bands>92 65 62 57 49 42 40 39 39 33 32 32 29 26 19 18 16 16 16 16 16 16 16 16 10 10 9 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 6 6 6 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAATTCATGTTTAGCAATA</pcr_primer_p1>
		<pcr_primer_p2>TTAGTGGAACAAGACATCAGACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAA</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAWTTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39755</snp_id>
        <super_contig>c014301193.Contig1</super_contig>
        <contig_pos>8717</contig_pos>
        <strand>+</strand>
        <context>CRAAAAWTTT[A/G]AGAATYCTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTT</left_flank>
        <right_flank>AGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATTCAGAAATTCAGAAATTCTGAGGAATTCAGAAATTCGAAAATCCAGAAATTCTGATAAATTCTGAAATTCTGAAATTCTGAAATTTAGAAATTCAGAAATCCAGAAATTCTGAAATTCTGAAGTTCAGAAATTCGAGATTTCTGTAATTCTGAAACTTTTAAATTCTGAAATATTTAAGCTTTTAAAAATTCGAAATTTCGGAATTCTGGATTTCTTGAATTTTGGAATTCCGATATTCTTTTAAATTTGAAAAATTCTCGAATTCCGAAGATTAAAAATTTTAAACTTCTGAAGTTTTTTAGATTTTTAATTTTTTCTCAGCATTTTCAAATAACATTCGATATTCAAAAAATTAGAATTCCAGAATTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAAAAATTACTTTTTCTATTGAAACTTTGCATCCTTTTCAGAGATTTCATATTTTGCAAAACTTTCTAGAATTCTCGATTTCCTTTCACCACGTCTTCTCTCCCCACTAATTCAAAGATGTCATCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGATTAAAATAGCC</canonical>
            <polymorphic>GAAATTCAGAAATTCAGAAATTCTGAGGAATTCAGAAATTCGAAAATCCAGAAATTCTGATAAATTCTGAAATTCTGAAATTCTGAAATTTAGAAATTCAGAAATCCAGAAATTCTGAAATTCTGAAGTTCAGAAATTCGAGATTTCTGTAATTCTGAAACTTTTAAATTCTGAAATATTTAAGCTTTTAAAAATTCGAAATTTCGGAATTCTGGATTTCTTGAATTTTGGAATTCCGATATTCTTTTAAATTTGAAAAATTCTCGAATTCCGAAGATTAAAAATTTTAAACTTCTGAAGTTTTTTAGATTTTTAATTTTTTCTCAGCATTTTCAAATAACATTCGATATTCAAAAAATTAGAATTCCAGAATTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTRAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAAAAATTACTTTTTCTATTGAAACTTTGCATCCTTTTCAGAGATTTCATATTTTGCAAAACTTTCTAGAATTCTCGATTTCCTTTCACCACGTCTTCTCTCCCCACTAATTCAAAGATGTCATCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGATTAAAATAGCC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAATTCATGTTTAGCAATA</pcr_primer_p1>
		<pcr_primer_p2>TTAGTGGAACAAGACATCAGACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAA</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTRAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39756</snp_id>
        <super_contig>c014301193.Contig1</super_contig>
        <contig_pos>8723</contig_pos>
        <strand>+</strand>
        <context>WTTTRAGAAT[C/T]CTCTTAMAAT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAAT</left_flank>
        <right_flank>CTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAA</right_flank>
        <qual_score>137</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAAATTCAGAAATTCTGAGGAATTCAGAAATTCGAAAATCCAGAAATTCTGATAAATTCTGAAATTCTGAAATTCTGAAATTTAGAAATTCAGAAATCCAGAAATTCTGAAATTCTGAAGTTCAGAAATTCGAGATTTCTGTAATTCTGAAACTTTTAAATTCTGAAATATTTAAGCTTTTAAAAATTCGAAATTTCGGAATTCTGGATTTCTTGAATTTTGGAATTCCGATATTCTTTTAAATTTGAAAAATTCTCGAATTCCGAAGATTAAAAATTTTAAACTTCTGAAGTTTTTTAGATTTTTAATTTTTTCTCAGCATTTTCAAATAACATTCGATATTCAAAAAATTAGAATTCCAGAATTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAAAAATTACTTTTTCTATTGAAACTTTGCATCCTTTTCAGAGATTTCATATTTTGCAAAACTTTCTAGAATTCTCGATTTCCTTTCACCACGTCTTCTCTCCCCACTAATTCAAAGATGTCATCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGATTAAAATAGCCTCAAAA</canonical>
            <polymorphic>CAGAAATTCAGAAATTCTGAGGAATTCAGAAATTCGAAAATCCAGAAATTCTGATAAATTCTGAAATTCTGAAATTCTGAAATTTAGAAATTCAGAAATCCAGAAATTCTGAAATTCTGAAGTTCAGAAATTCGAGATTTCTGTAATTCTGAAACTTTTAAATTCTGAAATATTTAAGCTTTTAAAAATTCGAAATTTCGGAATTCTGGATTTCTTGAATTTTGGAATTCCGATATTCTTTTAAATTTGAAAAATTCTCGAATTCCGAAGATTAAAAATTTTAAACTTCTGAAGTTTTTTAGATTTTTAATTTTTTCTCAGCATTTTCAAATAACATTCGATATTCAAAAAATTAGAATTCCAGAATTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATYCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAAAAATTACTTTTTCTATTGAAACTTTGCATCCTTTTCAGAGATTTCATATTTTGCAAAACTTTCTAGAATTCTCGATTTCCTTTCACCACGTCTTCTCTCCCCACTAATTCAAAGATGTCATCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGATTAAAATAGCCTCAAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GANTC</site>
                <isoschizomers>
                    <enzyme>HinfI</enzyme>
                </isoschizomers>
                <canonical_bands>496 256 202 46</canonical_bands>
                <polymorphic_bands>542 256 202</polymorphic_bands>
            </assay>
            <assay>
                <site>GAWTC</site>
                <isoschizomers>
                    <enzyme>TfiI</enzyme>
                </isoschizomers>
                <canonical_bands>496 256 248</canonical_bands>
                <polymorphic_bands>744 256</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAATTCATGTTTAGCAATA</pcr_primer_p1>
		<pcr_primer_p2>TTAGTGGAACAAGACATCAGACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAA</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATYCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39757</snp_id>
        <super_contig>c014301193.Contig1</super_contig>
        <contig_pos>8738</contig_pos>
        <strand>+</strand>
        <context>TAMAATTCCT[A/T]ATATTTCTAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCT</left_flank>
        <right_flank>ATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCT</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGAGGAATTCAGAAATTCGAAAATCCAGAAATTCTGATAAATTCTGAAATTCTGAAATTCTGAAATTTAGAAATTCAGAAATCCAGAAATTCTGAAATTCTGAAGTTCAGAAATTCGAGATTTCTGTAATTCTGAAACTTTTAAATTCTGAAATATTTAAGCTTTTAAAAATTCGAAATTTCGGAATTCTGGATTTCTTGAATTTTGGAATTCCGATATTCTTTTAAATTTGAAAAATTCTCGAATTCCGAAGATTAAAAATTTTAAACTTCTGAAGTTTTTTAGATTTTTAATTTTTTCTCAGCATTTTCAAATAACATTCGATATTCAAAAAATTAGAATTCCAGAATTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAAAAATTACTTTTTCTATTGAAACTTTGCATCCTTTTCAGAGATTTCATATTTTGCAAAACTTTCTAGAATTCTCGATTTCCTTTCACCACGTCTTCTCTCCCCACTAATTCAAAGATGTCATCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGATTAAAATAGCCTCAAAATGCTGAAAATCGATT</canonical>
            <polymorphic>TCTGAGGAATTCAGAAATTCGAAAATCCAGAAATTCTGATAAATTCTGAAATTCTGAAATTCTGAAATTTAGAAATTCAGAAATCCAGAAATTCTGAAATTCTGAAGTTCAGAAATTCGAGATTTCTGTAATTCTGAAACTTTTAAATTCTGAAATATTTAAGCTTTTAAAAATTCGAAATTTCGGAATTCTGGATTTCTTGAATTTTGGAATTCCGATATTCTTTTAAATTTGAAAAATTCTCGAATTCCGAAGATTAAAAATTTTAAACTTCTGAAGTTTTTTAGATTTTTAATTTTTTCTCAGCATTTTCAAATAACATTCGATATTCAAAAAATTAGAATTCCAGAATTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTWATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAAAAATTACTTTTTCTATTGAAACTTTGCATCCTTTTCAGAGATTTCATATTTTGCAAAACTTTCTAGAATTCTCGATTTCCTTTCACCACGTCTTCTCTCCCCACTAATTCAAAGATGTCATCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGATTAAAATAGCCTCAAAATGCTGAAAATCGATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTCAAATTCATGTTTAGCAATA</pcr_primer_p1>
		<pcr_primer_p2>TTAGTGGAACAAGACATCAGACT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAA</canonical_amplicon>
		<polymorphic_amplicon>TTTCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTWATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39758</snp_id>
        <super_contig>c014301193.Contig1</super_contig>
        <contig_pos>9091</contig_pos>
        <strand>+</strand>
        <context>CTAAAAATAT[G/T]GAGAAACTTA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATAT</left_flank>
        <right_flank>GAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAAAAATTACTTTTTCTATTGAAACTTTGCATCCTTTTCAGAGATTTCATATTTTGCAAAACTTTCTAGAATTCTCGATTTCCTTTCACCACGTCTTCTCTCCCCACTAATTCAAAGATGTCATCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGATTAAAATAGCCTCAAAATGCTGAAAATCGATTTGAAGTATCAAAAAGCTTTGAGAAACTTCTAGATCATTCCAGATCTTCAACATGGTTACAGATTTTTAATTTTCCAATTGTTTTTTTTTCAGACGAAAACGAGCAATCTTCTTGTTGACATGCTCTTGGATACTTGGTCTTCTGGTCGCGATCCTACCACTTTTCAATGTTTTTGGGTTTGCTGAGTGAGTTGTTTTTTGAATTGGGAGATTTTTGGACTTTTAAATTATGAAAATTAAAAAGAGGACTTAAAATTTTAAATGTGTGTTTCAGAGTTAGCAAATTAAAAAAATAAACTTTAAAAAATCCGAATTCCCAAATGTTCGGAATTCCGAGGTTTTCAATTTTTCAAT</canonical>
            <polymorphic>TCAAATTCATGTTTAGCAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAAAAATTACTTTTTCTATTGAAACTTTGCATCCTTTTCAGAGATTTCATATTTTGCAAAACTTTCTAGAATTCTCGATTTCCTTTCACCACGTCTTCTCTCCCCACTAATTCAAAGATGTCATCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATKGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGATTAAAATAGCCTCAAAATGCTGAAAATCGATTTGAAGTATCAAAAAGCTTTGAGAAACTTCTAGATCATTCCAGATCTTCAACATGGTTACAGATTTTTAATTTTCCAATTGTTTTTTTTTCAGACGAAAACGAGCAATCTTCTTGTTGACATGCTCTTGGATACTTGGTCTTCTGGTCGCGATCCTACCACTTTTCAATGTTTTTGGGTTTGCTGAGTGAGTTGTTTTTTGAATTGGGAGATTTTTGGACTTTTAAATTATGAAAATTAAAAAGAGGACTTAAAATTTTAAATGTGTGTTTCAGAGTTAGCAAATTAAAAAAATAAACTTTAAAAAATCCGAATTCCCAAATGTTCGGAATTCCGAGGTTTTCAATTTTTCAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCTGGATGAGAATCTAAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>TCCATTTTCTCAATATTTCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGA</canonical_amplicon>
		<polymorphic_amplicon>TCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATKGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39759</snp_id>
        <super_contig>c014301193.Contig1</super_contig>
        <contig_pos>9107</contig_pos>
        <strand>+</strand>
        <context>ACTTATTTTC[A/G]AATTTATTYA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTC</left_flank>
        <right_flank>AATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAAAAATTACTTTTTCTATTGAAACTTTGCATCCTTTTCAGAGATTTCATATTTTGCAAAACTTTCTAGAATTCTCGATTTCCTTTCACCACGTCTTCTCTCCCCACTAATTCAAAGATGTCATCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGATTAAAATAGCCTCAAAATGCTGAAAATCGATTTGAAGTATCAAAAAGCTTTGAGAAACTTCTAGATCATTCCAGATCTTCAACATGGTTACAGATTTTTAATTTTCCAATTGTTTTTTTTTCAGACGAAAACGAGCAATCTTCTTGTTGACATGCTCTTGGATACTTGGTCTTCTGGTCGCGATCCTACCACTTTTCAATGTTTTTGGGTTTGCTGAGTGAGTTGTTTTTTGAATTGGGAGATTTTTGGACTTTTAAATTATGAAAATTAAAAAGAGGACTTAAAATTTTAAATGTGTGTTTCAGAGTTAGCAAATTAAAAAAATAAACTTTAAAAAATCCGAATTCCCAAATGTTCGGAATTCCGAGGTTTTCAATTTTTCAATTTTTATAATTTTCCCA</canonical>
            <polymorphic>CAATACAACATTTTTAGGGAATTCGAAAATTCAAAAAAAAAAGAAAAATTCAAATTTCATGAAAAAGGTTTTTTGAGTTTTTTCAAATTTGAAAAATTCCGAAAAATTTTAGAATCCTCTTAAAATTCCTTATATTTCTAATTTTCTTACATTTTATGACTCATAAAAAGTTTTTGATCCTATTTTTTCCCATTTCTCTTTTTCAAAAGTCTGATGTCTTGTTCCACTAAAAATTACTTTTTCTATTGAAACTTTGCATCCTTTTCAGAGATTTCATATTTTGCAAAACTTTCTAGAATTCTCGATTTCCTTTCACCACGTCTTCTCTCCCCACTAATTCAAAGATGTCATCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCRAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGATTAAAATAGCCTCAAAATGCTGAAAATCGATTTGAAGTATCAAAAAGCTTTGAGAAACTTCTAGATCATTCCAGATCTTCAACATGGTTACAGATTTTTAATTTTCCAATTGTTTTTTTTTCAGACGAAAACGAGCAATCTTCTTGTTGACATGCTCTTGGATACTTGGTCTTCTGGTCGCGATCCTACCACTTTTCAATGTTTTTGGGTTTGCTGAGTGAGTTGTTTTTTGAATTGGGAGATTTTTGGACTTTTAAATTATGAAAATTAAAAAGAGGACTTAAAATTTTAAATGTGTGTTTCAGAGTTAGCAAATTAAAAAAATAAACTTTAAAAAATCCGAATTCCCAAATGTTCGGAATTCCGAGGTTTTCAATTTTTCAATTTTTATAATTTTCCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>383 173 110 94 58 42 33 19 19 19 17 10 9 8 6</canonical_bands>
                <polymorphic_bands>493 173 94 58 42 33 19 19 19 17 10 9 8 6</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCTGGATGAGAATCTAAAAACAG</pcr_primer_p1>
		<pcr_primer_p2>TCCATTTTCTCAATATTTCAGTT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCAAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGA</canonical_amplicon>
		<polymorphic_amplicon>TCTGGATGAGAATCTAAAAACAGAAAAAAACAATAATTCAAATTTATTTTCCATCGAAAATATCCGTCTTTTCGTGCGCATTTCCGCTCGGAAACTTGAAGGAATTGAGCTAATTTCGAATGACTAAAAATATGGAGAAACTTATTTTCRAATTTATTCAAAGGGAACTAAATCTTATCCAACATAAAAAAATTGTGAAAATTAGAGTAAAAAAACAAAAAAAAACAACTGAAATATTGAGAAAATGGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39760</snp_id>
        <super_contig>c014301193.Contig1</super_contig>
        <contig_pos>36819</contig_pos>
        <strand>+</strand>
        <context>GGGTGTATGG[C/G]ACCATTTATT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CATCCTCTCAGGGCTGGTATGGATATTTTTCAATTGTGTTGGGTGTATGG</left_flank>
        <right_flank>ACCATTTATTCCCATTTATTTCAATTTTCCGAATTCCGATGAAGCCAGAA</right_flank>
        <qual_score>139</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTACTAATTTAAAACCAGTCATGTGTTTCTTCTTGTACTCACTCGAATAAAAAAAAACTAATTATTTATTTTCCCTTCATTTGGTCAGGCAGGCACGTTTTCTACAGTTCCGGTCGCATTGTTTTCTCGAATAATCTGTCAAATCACTTTACTGAAGATCGCTGAAAATGTCTCAACAACTCGACGAATATTTCAAAAATGTTTATCCGATTTTATGCCAAAATTCTTCTGGAAACTTTTCGAAATTTCTAGAATCCAAAGAAAATTTCCTTTACACTTGCCGACTAATTATACTGATTGCCCTACCTTTTCAGCTTTTTACATTTTTCTGTATTCTCAAAAAAACGCCAAAAGCTATGGATTCTGTGAAATCGAGTCTCCTGAATTTAAATTGTTCTTATACATTTTGTGGGATTTTTTATTCATTCTTTTCGGCATCGTATTTTTTCCATCCTCTCAGGGCTGGTATGGATATTTTTCAATTGTGTTGGGTGTATGGGACCATTTATTCCCATTTATTTCAATTTTCCGAATTCCGATGAAGCCAGAATTATTGTTTTGAAGGTGAGAAGATGAGCAGATAATTGAGGTGCAGAATTATTGAATTCGCAACCTACAGGGCGGGGCAAAAGTTCTGTAGCAAAAGTTTGACGCAAGTTAGTTTATATTTTTCCCCGTCTCTTCATTAGGGCTTCCATTTGGGGGGCGATTCACTCGCCCGCACCCACCCGGGGGGGCTAACCCCCCGCGGCCCCCCGTTGACCCCCCGCGAATATTTACGTGAGGAAAATATTATCTTTTTTGTAGTTTTTTGATTTGAGAAACTCAGTTTTTCTTGGAAAATACATTATCCTTGAAAATTTTATTAAAATTCACACGCATTTAAATGCGGGGGGGGGGGCCGCGGGTAGGAGCCCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTCACCCGCCCAAATGGAAACCCTACTCTTCATTAGTAGATTTGCAAAGTTTCAT</canonical>
            <polymorphic>TTACTAATTTAAAACCAGTCATGTGTTTCTTCTTGTACTCACTCGAATAAAAAAAAACTAATTATTTATTTTCCCTTCATTTGGTCAGGCAGGCACGTTTTCTACAGTTCCGGTCGCATTGTTTTCTCGAATAATCTGTCAAATCACTTTACTGAAGATCGCTGAAAATGTCTCAACAACTCGACGAATATTTCAAAAATGTTTATCCGATTTTATGCCAAAATTCTTCTGGAAACTTTTCGAAATTTCTAGAATCCAAAGAAAATTTCCTTTACACTTGCCGACTAATTATACTGATTGCCCTACCTTTTCAGCTTTTTACATTTTTCTGTATTCTCAAAAAAACGCCAAAAGCTATGGATTCTGTGAAATCGAGTCTCCTGAATTTAAATTGTTCTTATACATTTTGTGGGATTTTTTATTCATTCTTTTCGGCATCGTATTTTTTCCATCCTCTCAGGGCTGGTATGGATATTTTTCAATTGTGTTGGGTGTATGGSACCATTTATTCCCATTTATTTCAATTTTCCGAATTCCGATGAAGCCAGAATTATTGTTTTGAAGGTGAGAAGATGAGCAGATAATTGAGGTGCAGAATTATTGAATTCGCAACCTACAGGGCGGGGCAAAAGTTCTGTAGCAAAAGTTTGACGCAAGTTAGTTTATATTTTTCCCCGTCTCTTCATTAGGGCTTCCATTTGGGGGGCGATTCACTCGCCCGCACCCACCCGGGGGGGCTAACCCCCCGCGGCCCCCCGTTGACCCCCCGCGAATATTTACGTGAGGAAAATATTATCTTTTTTGTAGTTTTTTGATTTGAGAAACTCAGTTTTTCTTGGAAAATACATTATCCTTGAAAATTTTATTAAAATTCACACGCATTTAAATGCGGGGGGGGGGGCCGCGGGTAGGAGCCCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTCACCCGCCCAAATGGAAACCCTACTCTTCATTAGTAGATTTGCAAAGTTTCAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGWCC</site>
                <isoschizomers>
                    <enzyme>AflI</enzyme>
                    <enzyme>AvaII</enzyme>
                    <enzyme>Bme18I</enzyme>
                    <enzyme>Eco47I</enzyme>
                    <enzyme>Psp03I</enzyme>
                    <enzyme>SinI</enzyme>
                    <enzyme>VpaK11AI</enzyme>
                    <enzyme>VpaK11BI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGNCC</site>
                <isoschizomers>
                    <enzyme>AspS9I</enzyme>
                    <enzyme>AsuI</enzyme>
                    <enzyme>BsiZI</enzyme>
                    <enzyme>Cfr13I</enzyme>
                    <enzyme>FmuI</enzyme>
                    <enzyme>PspPI</enzyme>
                    <enzyme>Sau96I</enzyme>
                    <enzyme>UnbI</enzyme>
                </isoschizomers>
                <canonical_bands>499 251 149 101</canonical_bands>
                <polymorphic_bands>750 149 101</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGATTCTGTGAAATCGAGTCT</pcr_primer_p1>
		<pcr_primer_p2>TAATTCTGCACCTCAATTATCTG</pcr_primer_p2>
		<pcr_amplicon_size>242</pcr_amplicon_size>
		<canonical_amplicon>GGATTCTGTGAAATCGAGTCTCCTGAATTTAAATTGTTCTTATACATTTTGTGGGATTTTTTATTCATTCTTTTCGGCATCGTATTTTTTCCATCCTCTCAGGGCTGGTATGGATATTTTTCAATTGTGTTGGGTGTATGGGACCATTTATTCCCATTTATTTCAATTTTCCGAATTCCGATGAAGCCAGAATTATTGTTTTGAAGGTGAGAAGATGAGCAGATAATTGAGGTGCAGAATTA</canonical_amplicon>
		<polymorphic_amplicon>GGATTCTGTGAAATCGAGTCTCCTGAATTTAAATTGTTCTTATACATTTTGTGGGATTTTTTATTCATTCTTTTCGGCATCGTATTTTTTCCATCCTCTCAGGGCTGGTATGGATATTTTTCAATTGTGTTGGGTGTATGGSACCATTTATTCCCATTTATTTCAATTTTCCGAATTCCGATGAAGCCAGAATTATTGTTTTGAAGGTGAGAAGATGAGCAGATAATTGAGGTGCAGAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39761</snp_id>
        <super_contig>c014301193.Contig1</super_contig>
        <contig_pos>36867</contig_pos>
        <strand>+</strand>
        <context>GATGAAGCCA[C/G]AATTATTGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>GGGACCATTTATTCCCATTTATTTCAATTTTCCGAATTCCGATGAAGCCA</left_flank>
        <right_flank>AATTATTGTTTTGAAGGTGAGAAGATGAGCAGATAATTGAGGTGCAGAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAAAAAAACTAATTATTTATTTTCCCTTCATTTGGTCAGGCAGGCACGTTTTCTACAGTTCCGGTCGCATTGTTTTCTCGAATAATCTGTCAAATCACTTTACTGAAGATCGCTGAAAATGTCTCAACAACTCGACGAATATTTCAAAAATGTTTATCCGATTTTATGCCAAAATTCTTCTGGAAACTTTTCGAAATTTCTAGAATCCAAAGAAAATTTCCTTTACACTTGCCGACTAATTATACTGATTGCCCTACCTTTTCAGCTTTTTACATTTTTCTGTATTCTCAAAAAAACGCCAAAAGCTATGGATTCTGTGAAATCGAGTCTCCTGAATTTAAATTGTTCTTATACATTTTGTGGGATTTTTTATTCATTCTTTTCGGCATCGTATTTTTTCCATCCTCTCAGGGCTGGTATGGATATTTTTCAATTGTGTTGGGTGTATGGGACCATTTATTCCCATTTATTTCAATTTTCCGAATTCCGATGAAGCCAGAATTATTGTTTTGAAGGTGAGAAGATGAGCAGATAATTGAGGTGCAGAATTATTGAATTCGCAACCTACAGGGCGGGGCAAAAGTTCTGTAGCAAAAGTTTGACGCAAGTTAGTTTATATTTTTCCCCGTCTCTTCATTAGGGCTTCCATTTGGGGGGCGATTCACTCGCCCGCACCCACCCGGGGGGGCTAACCCCCCGCGGCCCCCCGTTGACCCCCCGCGAATATTTACGTGAGGAAAATATTATCTTTTTTGTAGTTTTTTGATTTGAGAAACTCAGTTTTTCTTGGAAAATACATTATCCTTGAAAATTTTATTAAAATTCACACGCATTTAAATGCGGGGGGGGGGGCCGCGGGTAGGAGCCCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTCACCCGCCCAAATGGAAACCCTACTCTTCATTAGTAGATTTGCAAAGTTTCATGTTCATATGTCAATTTTTTCAAAGTTGGCACTACATTCTGTACACTTA</canonical>
            <polymorphic>AAAAAAAAACTAATTATTTATTTTCCCTTCATTTGGTCAGGCAGGCACGTTTTCTACAGTTCCGGTCGCATTGTTTTCTCGAATAATCTGTCAAATCACTTTACTGAAGATCGCTGAAAATGTCTCAACAACTCGACGAATATTTCAAAAATGTTTATCCGATTTTATGCCAAAATTCTTCTGGAAACTTTTCGAAATTTCTAGAATCCAAAGAAAATTTCCTTTACACTTGCCGACTAATTATACTGATTGCCCTACCTTTTCAGCTTTTTACATTTTTCTGTATTCTCAAAAAAACGCCAAAAGCTATGGATTCTGTGAAATCGAGTCTCCTGAATTTAAATTGTTCTTATACATTTTGTGGGATTTTTTATTCATTCTTTTCGGCATCGTATTTTTTCCATCCTCTCAGGGCTGGTATGGATATTTTTCAATTGTGTTGGGTGTATGGGACCATTTATTCCCATTTATTTCAATTTTCCGAATTCCGATGAAGCCASAATTATTGTTTTGAAGGTGAGAAGATGAGCAGATAATTGAGGTGCAGAATTATTGAATTCGCAACCTACAGGGCGGGGCAAAAGTTCTGTAGCAAAAGTTTGACGCAAGTTAGTTTATATTTTTCCCCGTCTCTTCATTAGGGCTTCCATTTGGGGGGCGATTCACTCGCCCGCACCCACCCGGGGGGGCTAACCCCCCGCGGCCCCCCGTTGACCCCCCGCGAATATTTACGTGAGGAAAATATTATCTTTTTTGTAGTTTTTTGATTTGAGAAACTCAGTTTTTCTTGGAAAATACATTATCCTTGAAAATTTTATTAAAATTCACACGCATTTAAATGCGGGGGGGGGGGCCGCGGGTAGGAGCCCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTCACCCGCCCAAATGGAAACCCTACTCTTCATTAGTAGATTTGCAAAGTTTCATGTTCATATGTCAATTTTTTCAAAGTTGGCACTACATTCTGTACACTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTATGGATATTTTTCAATTGTG</pcr_primer_p1>
		<pcr_primer_p2>ATAAACTAACTTGCGTCAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>202</pcr_amplicon_size>
		<canonical_amplicon>GGTATGGATATTTTTCAATTGTGTTGGGTGTATGGGACCATTTATTCCCATTTATTTCAATTTTCCGAATTCCGATGAAGCCAGAATTATTGTTTTGAAGGTGAGAAGATGAGCAGATAATTGAGGTGCAGAATTATTGAATTCGCAACCTACAGGGCGGGGCAAAAGTTCTGTAGCAAAAGTTTGACGCAAGTTAGTTTAT</canonical_amplicon>
		<polymorphic_amplicon>GGTATGGATATTTTTCAATTGTGTTGGGTGTATGGGACCATTTATTCCCATTTATTTCAATTTTCCGAATTCCGATGAAGCCASAATTATTGTTTTGAAGGTGAGAAGATGAGCAGATAATTGAGGTGCAGAATTATTGAATTCGCAACCTACAGGGCGGGGCAAAAGTTCTGTAGCAAAAGTTTGACGCAAGTTAGTTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39762</snp_id>
        <super_contig>c014301193.Contig1</super_contig>
        <contig_pos>36922</contig_pos>
        <strand>+</strand>
        <context>CAGAATTATT[A/G]AATTCGCAAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATTGTTTTGAAGGTGAGAAGATGAGCAGATAATTGAGGTGCAGAATTATT</left_flank>
        <right_flank>AATTCGCAACCTACAGGGCGGGGCAAAAGTTCTGTAGCAAAAGTTTGACG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAGTTCCGGTCGCATTGTTTTCTCGAATAATCTGTCAAATCACTTTACTGAAGATCGCTGAAAATGTCTCAACAACTCGACGAATATTTCAAAAATGTTTATCCGATTTTATGCCAAAATTCTTCTGGAAACTTTTCGAAATTTCTAGAATCCAAAGAAAATTTCCTTTACACTTGCCGACTAATTATACTGATTGCCCTACCTTTTCAGCTTTTTACATTTTTCTGTATTCTCAAAAAAACGCCAAAAGCTATGGATTCTGTGAAATCGAGTCTCCTGAATTTAAATTGTTCTTATACATTTTGTGGGATTTTTTATTCATTCTTTTCGGCATCGTATTTTTTCCATCCTCTCAGGGCTGGTATGGATATTTTTCAATTGTGTTGGGTGTATGGGACCATTTATTCCCATTTATTTCAATTTTCCGAATTCCGATGAAGCCAGAATTATTGTTTTGAAGGTGAGAAGATGAGCAGATAATTGAGGTGCAGAATTATTGAATTCGCAACCTACAGGGCGGGGCAAAAGTTCTGTAGCAAAAGTTTGACGCAAGTTAGTTTATATTTTTCCCCGTCTCTTCATTAGGGCTTCCATTTGGGGGGCGATTCACTCGCCCGCACCCACCCGGGGGGGCTAACCCCCCGCGGCCCCCCGTTGACCCCCCGCGAATATTTACGTGAGGAAAATATTATCTTTTTTGTAGTTTTTTGATTTGAGAAACTCAGTTTTTCTTGGAAAATACATTATCCTTGAAAATTTTATTAAAATTCACACGCATTTAAATGCGGGGGGGGGGGCCGCGGGTAGGAGCCCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTCACCCGCCCAAATGGAAACCCTACTCTTCATTAGTAGATTTGCAAAGTTTCATGTTCATATGTCAATTTTTTCAAAGTTGGCACTACATTCTGTACACTTATAATACTTTGATTTTTTCCTGTATTTGGCGGATCCTTGAGAGCAAGCAAGCGAGC</canonical>
            <polymorphic>ACAGTTCCGGTCGCATTGTTTTCTCGAATAATCTGTCAAATCACTTTACTGAAGATCGCTGAAAATGTCTCAACAACTCGACGAATATTTCAAAAATGTTTATCCGATTTTATGCCAAAATTCTTCTGGAAACTTTTCGAAATTTCTAGAATCCAAAGAAAATTTCCTTTACACTTGCCGACTAATTATACTGATTGCCCTACCTTTTCAGCTTTTTACATTTTTCTGTATTCTCAAAAAAACGCCAAAAGCTATGGATTCTGTGAAATCGAGTCTCCTGAATTTAAATTGTTCTTATACATTTTGTGGGATTTTTTATTCATTCTTTTCGGCATCGTATTTTTTCCATCCTCTCAGGGCTGGTATGGATATTTTTCAATTGTGTTGGGTGTATGGGACCATTTATTCCCATTTATTTCAATTTTCCGAATTCCGATGAAGCCAGAATTATTGTTTTGAAGGTGAGAAGATGAGCAGATAATTGAGGTGCAGAATTATTRAATTCGCAACCTACAGGGCGGGGCAAAAGTTCTGTAGCAAAAGTTTGACGCAAGTTAGTTTATATTTTTCCCCGTCTCTTCATTAGGGCTTCCATTTGGGGGGCGATTCACTCGCCCGCACCCACCCGGGGGGGCTAACCCCCCGCGGCCCCCCGTTGACCCCCCGCGAATATTTACGTGAGGAAAATATTATCTTTTTTGTAGTTTTTTGATTTGAGAAACTCAGTTTTTCTTGGAAAATACATTATCCTTGAAAATTTTATTAAAATTCACACGCATTTAAATGCGGGGGGGGGGGCCGCGGGTAGGAGCCCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTCACCCGCCCAAATGGAAACCCTACTCTTCATTAGTAGATTTGCAAAGTTTCATGTTCATATGTCAATTTTTTCAAAGTTGGCACTACATTCTGTACACTTATAATACTTTGATTTTTTCCTGTATTTGGCGGATCCTTGAGAGCAAGCAAGCGAGC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>255 234 148 120 118 72 22 20 11</canonical_bands>
                <polymorphic_bands>327 234 148 120 118 22 20 11</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>500 428 72</canonical_bands>
                <polymorphic_bands>572 428</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTATGGATATTTTTCAATTGTG</pcr_primer_p1>
		<pcr_primer_p2>ATAAACTAACTTGCGTCAAACTT</pcr_primer_p2>
		<pcr_amplicon_size>202</pcr_amplicon_size>
		<canonical_amplicon>GGTATGGATATTTTTCAATTGTGTTGGGTGTATGGGACCATTTATTCCCATTTATTTCAATTTTCCGAATTCCGATGAAGCCAGAATTATTGTTTTGAAGGTGAGAAGATGAGCAGATAATTGAGGTGCAGAATTATTGAATTCGCAACCTACAGGGCGGGGCAAAAGTTCTGTAGCAAAAGTTTGACGCAAGTTAGTTTAT</canonical_amplicon>
		<polymorphic_amplicon>GGTATGGATATTTTTCAATTGTGTTGGGTGTATGGGACCATTTATTCCCATTTATTTCAATTTTCCGAATTCCGATGAAGCCAGAATTATTGTTTTGAAGGTGAGAAGATGAGCAGATAATTGAGGTGCAGAATTATTRAATTCGCAACCTACAGGGCGGGGCAAAAGTTCTGTAGCAAAAGTTTGACGCAAGTTAGTTTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39763</snp_id>
        <super_contig>c014301193.Contig1</super_contig>
        <contig_pos>36953</contig_pos>
        <strand>+</strand>
        <context>GGGCAAAAGT[C/T]CTGTAGCAAA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTGAGGTGCAGAATTATTGAATTCGCAACCTACAGGGCGGGGCAAAAGT</left_flank>
        <right_flank>CTGTAGCAAAAGTTTGACGCAAGTTAGTTTATATTTTTCCCCGTCTCTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTGTCAAATCACTTTACTGAAGATCGCTGAAAATGTCTCAACAACTCGACGAATATTTCAAAAATGTTTATCCGATTTTATGCCAAAATTCTTCTGGAAACTTTTCGAAATTTCTAGAATCCAAAGAAAATTTCCTTTACACTTGCCGACTAATTATACTGATTGCCCTACCTTTTCAGCTTTTTACATTTTTCTGTATTCTCAAAAAAACGCCAAAAGCTATGGATTCTGTGAAATCGAGTCTCCTGAATTTAAATTGTTCTTATACATTTTGTGGGATTTTTTATTCATTCTTTTCGGCATCGTATTTTTTCCATCCTCTCAGGGCTGGTATGGATATTTTTCAATTGTGTTGGGTGTATGGGACCATTTATTCCCATTTATTTCAATTTTCCGAATTCCGATGAAGCCAGAATTATTGTTTTGAAGGTGAGAAGATGAGCAGATAATTGAGGTGCAGAATTATTGAATTCGCAACCTACAGGGCGGGGCAAAAGTTCTGTAGCAAAAGTTTGACGCAAGTTAGTTTATATTTTTCCCCGTCTCTTCATTAGGGCTTCCATTTGGGGGGCGATTCACTCGCCCGCACCCACCCGGGGGGGCTAACCCCCCGCGGCCCCCCGTTGACCCCCCGCGAATATTTACGTGAGGAAAATATTATCTTTTTTGTAGTTTTTTGATTTGAGAAACTCAGTTTTTCTTGGAAAATACATTATCCTTGAAAATTTTATTAAAATTCACACGCATTTAAATGCGGGGGGGGGGGCCGCGGGTAGGAGCCCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTCACCCGCCCAAATGGAAACCCTACTCTTCATTAGTAGATTTGCAAAGTTTCATGTTCATATGTCAATTTTTTCAAAGTTGGCACTACATTCTGTACACTTATAATACTTTGATTTTTTCCTGTATTTGGCGGATCCTTGAGAGCAAGCAAGCGAGCCAGGAATACTATTTCTAGTGAAAATTATGAT</canonical>
            <polymorphic>TCTGTCAAATCACTTTACTGAAGATCGCTGAAAATGTCTCAACAACTCGACGAATATTTCAAAAATGTTTATCCGATTTTATGCCAAAATTCTTCTGGAAACTTTTCGAAATTTCTAGAATCCAAAGAAAATTTCCTTTACACTTGCCGACTAATTATACTGATTGCCCTACCTTTTCAGCTTTTTACATTTTTCTGTATTCTCAAAAAAACGCCAAAAGCTATGGATTCTGTGAAATCGAGTCTCCTGAATTTAAATTGTTCTTATACATTTTGTGGGATTTTTTATTCATTCTTTTCGGCATCGTATTTTTTCCATCCTCTCAGGGCTGGTATGGATATTTTTCAATTGTGTTGGGTGTATGGGACCATTTATTCCCATTTATTTCAATTTTCCGAATTCCGATGAAGCCAGAATTATTGTTTTGAAGGTGAGAAGATGAGCAGATAATTGAGGTGCAGAATTATTGAATTCGCAACCTACAGGGCGGGGCAAAAGTYCTGTAGCAAAAGTTTGACGCAAGTTAGTTTATATTTTTCCCCGTCTCTTCATTAGGGCTTCCATTTGGGGGGCGATTCACTCGCCCGCACCCACCCGGGGGGGCTAACCCCCCGCGGCCCCCCGTTGACCCCCCGCGAATATTTACGTGAGGAAAATATTATCTTTTTTGTAGTTTTTTGATTTGAGAAACTCAGTTTTTCTTGGAAAATACATTATCCTTGAAAATTTTATTAAAATTCACACGCATTTAAATGCGGGGGGGGGGGCCGCGGGTAGGAGCCCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTCACCCGCCCAAATGGAAACCCTACTCTTCATTAGTAGATTTGCAAAGTTTCATGTTCATATGTCAATTTTTTCAAAGTTGGCACTACATTCTGTACACTTATAATACTTTGATTTTTTCCTGTATTTGGCGGATCCTTGAGAGCAAGCAAGCGAGCCAGGAATACTATTTCTAGTGAAAATTATGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATGAGCAGATAATTGAGGTG</pcr_primer_p1>
		<pcr_primer_p2>ACTTTGCAAATCTACTAATGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>AGATGAGCAGATAATTGAGGTGCAGAATTATTGAATTCGCAACCTACAGGGCGGGGCAAAAGTTCTGTAGCAAAAGTTTGACGCAAGTTAGTTTATATTTTTCCCCGTCTCTTCATTAGGGCTTCCATTTGGGGGGCGATTCACTCGCCCGCACCCACCCGGGGGGGCTAACCCCCCGCGGCCCCCCGTTGACCCCCCGCGAATATTTACGTGAGGAAAATATTATCTTTTTTGTAGTTTTTTGATTTGAGAAACTCAGTTTTTCTTGGAAAATACATTATCCTTGAAAATTTTATTAAAATTCACACGCATTTAAATGCGGGGGGGGGGGCCGCGGGTAGGAGCCCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTCACCCGCCCAAATGGAAACCCTACTCTTCATTAGTAGATTTGCAAAGT</canonical_amplicon>
		<polymorphic_amplicon>AGATGAGCAGATAATTGAGGTGCAGAATTATTGAATTCGCAACCTACAGGGCGGGGCAAAAGTYCTGTAGCAAAAGTTTGACGCAAGTTAGTTTATATTTTTCCCCGTCTCTTCATTAGGGCTTCCATTTGGGGGGCGATTCACTCGCCCGCACCCACCCGGGGGGGCTAACCCCCCGCGGCCCCCCGTTGACCCCCCGCGAATATTTACGTGAGGAAAATATTATCTTTTTTGTAGTTTTTTGATTTGAGAAACTCAGTTTTTCTTGGAAAATACATTATCCTTGAAAATTTTATTAAAATTCACACGCATTTAAATGCGGGGGGGGGGGCCGCGGGTAGGAGCCCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTCACCCGCCCAAATGGAAACCCTACTCTTCATTAGTAGATTTGCAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39764</snp_id>
        <super_contig>c014301193.Contig1</super_contig>
        <contig_pos>36986</contig_pos>
        <strand>+</strand>
        <context>GTTAGTTTAT[A/T]YTTTTCCCCG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CAGGGCGGGGCAAAAGTTCTGTAGCAAAAGTTTGACGCAAGTTAGTTTAT</left_flank>
        <right_flank>TTTTTCCCCGTCTCTTCATTAGGGCTTCCATTTGGGGGGCGATTCACTCG</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGTCTCAACAACTCGACGAATATTTCAAAAATGTTTATCCGATTTTATGCCAAAATTCTTCTGGAAACTTTTCGAAATTTCTAGAATCCAAAGAAAATTTCCTTTACACTTGCCGACTAATTATACTGATTGCCCTACCTTTTCAGCTTTTTACATTTTTCTGTATTCTCAAAAAAACGCCAAAAGCTATGGATTCTGTGAAATCGAGTCTCCTGAATTTAAATTGTTCTTATACATTTTGTGGGATTTTTTATTCATTCTTTTCGGCATCGTATTTTTTCCATCCTCTCAGGGCTGGTATGGATATTTTTCAATTGTGTTGGGTGTATGGGACCATTTATTCCCATTTATTTCAATTTTCCGAATTCCGATGAAGCCAGAATTATTGTTTTGAAGGTGAGAAGATGAGCAGATAATTGAGGTGCAGAATTATTGAATTCGCAACCTACAGGGCGGGGCAAAAGTTCTGTAGCAAAAGTTTGACGCAAGTTAGTTTATATTTTTCCCCGTCTCTTCATTAGGGCTTCCATTTGGGGGGCGATTCACTCGCCCGCACCCACCCGGGGGGGCTAACCCCCCGCGGCCCCCCGTTGACCCCCCGCGAATATTTACGTGAGGAAAATATTATCTTTTTTGTAGTTTTTTGATTTGAGAAACTCAGTTTTTCTTGGAAAATACATTATCCTTGAAAATTTTATTAAAATTCACACGCATTTAAATGCGGGGGGGGGGGCCGCGGGTAGGAGCCCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTCACCCGCCCAAATGGAAACCCTACTCTTCATTAGTAGATTTGCAAAGTTTCATGTTCATATGTCAATTTTTTCAAAGTTGGCACTACATTCTGTACACTTATAATACTTTGATTTTTTCCTGTATTTGGCGGATCCTTGAGAGCAAGCAAGCGAGCCAGGAATACTATTTCTAGTGAAAATTATGATGCCTACGTCATGGTGCCTAGAAGATCGTAGTGT</canonical>
            <polymorphic>ATGTCTCAACAACTCGACGAATATTTCAAAAATGTTTATCCGATTTTATGCCAAAATTCTTCTGGAAACTTTTCGAAATTTCTAGAATCCAAAGAAAATTTCCTTTACACTTGCCGACTAATTATACTGATTGCCCTACCTTTTCAGCTTTTTACATTTTTCTGTATTCTCAAAAAAACGCCAAAAGCTATGGATTCTGTGAAATCGAGTCTCCTGAATTTAAATTGTTCTTATACATTTTGTGGGATTTTTTATTCATTCTTTTCGGCATCGTATTTTTTCCATCCTCTCAGGGCTGGTATGGATATTTTTCAATTGTGTTGGGTGTATGGGACCATTTATTCCCATTTATTTCAATTTTCCGAATTCCGATGAAGCCAGAATTATTGTTTTGAAGGTGAGAAGATGAGCAGATAATTGAGGTGCAGAATTATTGAATTCGCAACCTACAGGGCGGGGCAAAAGTTCTGTAGCAAAAGTTTGACGCAAGTTAGTTTATWTTTTTCCCCGTCTCTTCATTAGGGCTTCCATTTGGGGGGCGATTCACTCGCCCGCACCCACCCGGGGGGGCTAACCCCCCGCGGCCCCCCGTTGACCCCCCGCGAATATTTACGTGAGGAAAATATTATCTTTTTTGTAGTTTTTTGATTTGAGAAACTCAGTTTTTCTTGGAAAATACATTATCCTTGAAAATTTTATTAAAATTCACACGCATTTAAATGCGGGGGGGGGGGCCGCGGGTAGGAGCCCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTCACCCGCCCAAATGGAAACCCTACTCTTCATTAGTAGATTTGCAAAGTTTCATGTTCATATGTCAATTTTTTCAAAGTTGGCACTACATTCTGTACACTTATAATACTTTGATTTTTTCCTGTATTTGGCGGATCCTTGAGAGCAAGCAAGCGAGCCAGGAATACTATTTCTAGTGAAAATTATGATGCCTACGTCATGGTGCCTAGAAGATCGTAGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATGAGCAGATAATTGAGGTG</pcr_primer_p1>
		<pcr_primer_p2>ACTTTGCAAATCTACTAATGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>AGATGAGCAGATAATTGAGGTGCAGAATTATTGAATTCGCAACCTACAGGGCGGGGCAAAAGTTCTGTAGCAAAAGTTTGACGCAAGTTAGTTTATATTTTTCCCCGTCTCTTCATTAGGGCTTCCATTTGGGGGGCGATTCACTCGCCCGCACCCACCCGGGGGGGCTAACCCCCCGCGGCCCCCCGTTGACCCCCCGCGAATATTTACGTGAGGAAAATATTATCTTTTTTGTAGTTTTTTGATTTGAGAAACTCAGTTTTTCTTGGAAAATACATTATCCTTGAAAATTTTATTAAAATTCACACGCATTTAAATGCGGGGGGGGGGGCCGCGGGTAGGAGCCCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTCACCCGCCCAAATGGAAACCCTACTCTTCATTAGTAGATTTGCAAAGT</canonical_amplicon>
		<polymorphic_amplicon>AGATGAGCAGATAATTGAGGTGCAGAATTATTGAATTCGCAACCTACAGGGCGGGGCAAAAGTTCTGTAGCAAAAGTTTGACGCAAGTTAGTTTATWTTTTTCCCCGTCTCTTCATTAGGGCTTCCATTTGGGGGGCGATTCACTCGCCCGCACCCACCCGGGGGGGCTAACCCCCCGCGGCCCCCCGTTGACCCCCCGCGAATATTTACGTGAGGAAAATATTATCTTTTTTGTAGTTTTTTGATTTGAGAAACTCAGTTTTTCTTGGAAAATACATTATCCTTGAAAATTTTATTAAAATTCACACGCATTTAAATGCGGGGGGGGGGGCCGCGGGTAGGAGCCCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTCACCCGCCCAAATGGAAACCCTACTCTTCATTAGTAGATTTGCAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39765</snp_id>
        <super_contig>c014301193.Contig1</super_contig>
        <contig_pos>36987</contig_pos>
        <strand>+</strand>
        <context>TTAGTTTATW[C/T]TTTTCCCCGY</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AGGGCGGGGCAAAAGTTCTGTAGCAAAAGTTTGACGCAAGTTAGTTTATA</left_flank>
        <right_flank>TTTTCCCCGTCTCTTCATTAGGGCTTCCATTTGGGGGGCGATTCACTCGC</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TGTCTCAACAACTCGACGAATATTTCAAAAATGTTTATCCGATTTTATGCCAAAATTCTTCTGGAAACTTTTCGAAATTTCTAGAATCCAAAGAAAATTTCCTTTACACTTGCCGACTAATTATACTGATTGCCCTACCTTTTCAGCTTTTTACATTTTTCTGTATTCTCAAAAAAACGCCAAAAGCTATGGATTCTGTGAAATCGAGTCTCCTGAATTTAAATTGTTCTTATACATTTTGTGGGATTTTTTATTCATTCTTTTCGGCATCGTATTTTTTCCATCCTCTCAGGGCTGGTATGGATATTTTTCAATTGTGTTGGGTGTATGGGACCATTTATTCCCATTTATTTCAATTTTCCGAATTCCGATGAAGCCAGAATTATTGTTTTGAAGGTGAGAAGATGAGCAGATAATTGAGGTGCAGAATTATTGAATTCGCAACCTACAGGGCGGGGCAAAAGTTCTGTAGCAAAAGTTTGACGCAAGTTAGTTTATATTTTTCCCCGTCTCTTCATTAGGGCTTCCATTTGGGGGGCGATTCACTCGCCCGCACCCACCCGGGGGGGCTAACCCCCCGCGGCCCCCCGTTGACCCCCCGCGAATATTTACGTGAGGAAAATATTATCTTTTTTGTAGTTTTTTGATTTGAGAAACTCAGTTTTTCTTGGAAAATACATTATCCTTGAAAATTTTATTAAAATTCACACGCATTTAAATGCGGGGGGGGGGGCCGCGGGTAGGAGCCCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTCACCCGCCCAAATGGAAACCCTACTCTTCATTAGTAGATTTGCAAAGTTTCATGTTCATATGTCAATTTTTTCAAAGTTGGCACTACATTCTGTACACTTATAATACTTTGATTTTTTCCTGTATTTGGCGGATCCTTGAGAGCAAGCAAGCGAGCCAGGAATACTATTTCTAGTGAAAATTATGATGCCTACGTCATGGTGCCTAGAAGATCGTAGTGTC</canonical>
            <polymorphic>TGTCTCAACAACTCGACGAATATTTCAAAAATGTTTATCCGATTTTATGCCAAAATTCTTCTGGAAACTTTTCGAAATTTCTAGAATCCAAAGAAAATTTCCTTTACACTTGCCGACTAATTATACTGATTGCCCTACCTTTTCAGCTTTTTACATTTTTCTGTATTCTCAAAAAAACGCCAAAAGCTATGGATTCTGTGAAATCGAGTCTCCTGAATTTAAATTGTTCTTATACATTTTGTGGGATTTTTTATTCATTCTTTTCGGCATCGTATTTTTTCCATCCTCTCAGGGCTGGTATGGATATTTTTCAATTGTGTTGGGTGTATGGGACCATTTATTCCCATTTATTTCAATTTTCCGAATTCCGATGAAGCCAGAATTATTGTTTTGAAGGTGAGAAGATGAGCAGATAATTGAGGTGCAGAATTATTGAATTCGCAACCTACAGGGCGGGGCAAAAGTTCTGTAGCAAAAGTTTGACGCAAGTTAGTTTATAYTTTTCCCCGTCTCTTCATTAGGGCTTCCATTTGGGGGGCGATTCACTCGCCCGCACCCACCCGGGGGGGCTAACCCCCCGCGGCCCCCCGTTGACCCCCCGCGAATATTTACGTGAGGAAAATATTATCTTTTTTGTAGTTTTTTGATTTGAGAAACTCAGTTTTTCTTGGAAAATACATTATCCTTGAAAATTTTATTAAAATTCACACGCATTTAAATGCGGGGGGGGGGGCCGCGGGTAGGAGCCCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTCACCCGCCCAAATGGAAACCCTACTCTTCATTAGTAGATTTGCAAAGTTTCATGTTCATATGTCAATTTTTTCAAAGTTGGCACTACATTCTGTACACTTATAATACTTTGATTTTTTCCTGTATTTGGCGGATCCTTGAGAGCAAGCAAGCGAGCCAGGAATACTATTTCTAGTGAAAATTATGATGCCTACGTCATGGTGCCTAGAAGATCGTAGTGTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATGAGCAGATAATTGAGGTG</pcr_primer_p1>
		<pcr_primer_p2>ACTTTGCAAATCTACTAATGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>AGATGAGCAGATAATTGAGGTGCAGAATTATTGAATTCGCAACCTACAGGGCGGGGCAAAAGTTCTGTAGCAAAAGTTTGACGCAAGTTAGTTTATATTTTTCCCCGTCTCTTCATTAGGGCTTCCATTTGGGGGGCGATTCACTCGCCCGCACCCACCCGGGGGGGCTAACCCCCCGCGGCCCCCCGTTGACCCCCCGCGAATATTTACGTGAGGAAAATATTATCTTTTTTGTAGTTTTTTGATTTGAGAAACTCAGTTTTTCTTGGAAAATACATTATCCTTGAAAATTTTATTAAAATTCACACGCATTTAAATGCGGGGGGGGGGGCCGCGGGTAGGAGCCCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTCACCCGCCCAAATGGAAACCCTACTCTTCATTAGTAGATTTGCAAAGT</canonical_amplicon>
		<polymorphic_amplicon>AGATGAGCAGATAATTGAGGTGCAGAATTATTGAATTCGCAACCTACAGGGCGGGGCAAAAGTTCTGTAGCAAAAGTTTGACGCAAGTTAGTTTATAYTTTTCCCCGTCTCTTCATTAGGGCTTCCATTTGGGGGGCGATTCACTCGCCCGCACCCACCCGGGGGGGCTAACCCCCCGCGGCCCCCCGTTGACCCCCCGCGAATATTTACGTGAGGAAAATATTATCTTTTTTGTAGTTTTTTGATTTGAGAAACTCAGTTTTTCTTGGAAAATACATTATCCTTGAAAATTTTATTAAAATTCACACGCATTTAAATGCGGGGGGGGGGGCCGCGGGTAGGAGCCCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTCACCCGCCCAAATGGAAACCCTACTCTTCATTAGTAGATTTGCAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39766</snp_id>
        <super_contig>c014301193.Contig1</super_contig>
        <contig_pos>36997</contig_pos>
        <strand>+</strand>
        <context>YTTTTCCCCG[C/T]CTCTTCATta</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAAAGTTCTGTAGCAAAAGTTTGACGCAAGTTAGTTTATATTTTTCCCCG</left_flank>
        <right_flank>CTCTTCATTAGGGCTTCCATTTGGGGGGCGATTCACTCGCCCGCACCCAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTCGACGAATATTTCAAAAATGTTTATCCGATTTTATGCCAAAATTCTTCTGGAAACTTTTCGAAATTTCTAGAATCCAAAGAAAATTTCCTTTACACTTGCCGACTAATTATACTGATTGCCCTACCTTTTCAGCTTTTTACATTTTTCTGTATTCTCAAAAAAACGCCAAAAGCTATGGATTCTGTGAAATCGAGTCTCCTGAATTTAAATTGTTCTTATACATTTTGTGGGATTTTTTATTCATTCTTTTCGGCATCGTATTTTTTCCATCCTCTCAGGGCTGGTATGGATATTTTTCAATTGTGTTGGGTGTATGGGACCATTTATTCCCATTTATTTCAATTTTCCGAATTCCGATGAAGCCAGAATTATTGTTTTGAAGGTGAGAAGATGAGCAGATAATTGAGGTGCAGAATTATTGAATTCGCAACCTACAGGGCGGGGCAAAAGTTCTGTAGCAAAAGTTTGACGCAAGTTAGTTTATATTTTTCCCCGTCTCTTCATTAGGGCTTCCATTTGGGGGGCGATTCACTCGCCCGCACCCACCCGGGGGGGCTAACCCCCCGCGGCCCCCCGTTGACCCCCCGCGAATATTTACGTGAGGAAAATATTATCTTTTTTGTAGTTTTTTGATTTGAGAAACTCAGTTTTTCTTGGAAAATACATTATCCTTGAAAATTTTATTAAAATTCACACGCATTTAAATGCGGGGGGGGGGGCCGCGGGTAGGAGCCCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTCACCCGCCCAAATGGAAACCCTACTCTTCATTAGTAGATTTGCAAAGTTTCATGTTCATATGTCAATTTTTTCAAAGTTGGCACTACATTCTGTACACTTATAATACTTTGATTTTTTCCTGTATTTGGCGGATCCTTGAGAGCAAGCAAGCGAGCCAGGAATACTATTTCTAGTGAAAATTATGATGCCTACGTCATGGTGCCTAGAAGATCGTAGTGTCAGATTACCCG</canonical>
            <polymorphic>ACTCGACGAATATTTCAAAAATGTTTATCCGATTTTATGCCAAAATTCTTCTGGAAACTTTTCGAAATTTCTAGAATCCAAAGAAAATTTCCTTTACACTTGCCGACTAATTATACTGATTGCCCTACCTTTTCAGCTTTTTACATTTTTCTGTATTCTCAAAAAAACGCCAAAAGCTATGGATTCTGTGAAATCGAGTCTCCTGAATTTAAATTGTTCTTATACATTTTGTGGGATTTTTTATTCATTCTTTTCGGCATCGTATTTTTTCCATCCTCTCAGGGCTGGTATGGATATTTTTCAATTGTGTTGGGTGTATGGGACCATTTATTCCCATTTATTTCAATTTTCCGAATTCCGATGAAGCCAGAATTATTGTTTTGAAGGTGAGAAGATGAGCAGATAATTGAGGTGCAGAATTATTGAATTCGCAACCTACAGGGCGGGGCAAAAGTTCTGTAGCAAAAGTTTGACGCAAGTTAGTTTATATTTTTCCCCGYCTCTTCATTAGGGCTTCCATTTGGGGGGCGATTCACTCGCCCGCACCCACCCGGGGGGGCTAACCCCCCGCGGCCCCCCGTTGACCCCCCGCGAATATTTACGTGAGGAAAATATTATCTTTTTTGTAGTTTTTTGATTTGAGAAACTCAGTTTTTCTTGGAAAATACATTATCCTTGAAAATTTTATTAAAATTCACACGCATTTAAATGCGGGGGGGGGGGCCGCGGGTAGGAGCCCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTCACCCGCCCAAATGGAAACCCTACTCTTCATTAGTAGATTTGCAAAGTTTCATGTTCATATGTCAATTTTTTCAAAGTTGGCACTACATTCTGTACACTTATAATACTTTGATTTTTTCCTGTATTTGGCGGATCCTTGAGAGCAAGCAAGCGAGCCAGGAATACTATTTCTAGTGAAAATTATGATGCCTACGTCATGGTGCCTAGAAGATCGTAGTGTCAGATTACCCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGATGAGCAGATAATTGAGGTG</pcr_primer_p1>
		<pcr_primer_p2>ACTTTGCAAATCTACTAATGAAGA</pcr_primer_p2>
		<pcr_amplicon_size>425</pcr_amplicon_size>
		<canonical_amplicon>AGATGAGCAGATAATTGAGGTGCAGAATTATTGAATTCGCAACCTACAGGGCGGGGCAAAAGTTCTGTAGCAAAAGTTTGACGCAAGTTAGTTTATATTTTTCCCCGTCTCTTCATTAGGGCTTCCATTTGGGGGGCGATTCACTCGCCCGCACCCACCCGGGGGGGCTAACCCCCCGCGGCCCCCCGTTGACCCCCCGCGAATATTTACGTGAGGAAAATATTATCTTTTTTGTAGTTTTTTGATTTGAGAAACTCAGTTTTTCTTGGAAAATACATTATCCTTGAAAATTTTATTAAAATTCACACGCATTTAAATGCGGGGGGGGGGGCCGCGGGTAGGAGCCCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTCACCCGCCCAAATGGAAACCCTACTCTTCATTAGTAGATTTGCAAAGT</canonical_amplicon>
		<polymorphic_amplicon>AGATGAGCAGATAATTGAGGTGCAGAATTATTGAATTCGCAACCTACAGGGCGGGGCAAAAGTTCTGTAGCAAAAGTTTGACGCAAGTTAGTTTATATTTTTCCCCGYCTCTTCATTAGGGCTTCCATTTGGGGGGCGATTCACTCGCCCGCACCCACCCGGGGGGGCTAACCCCCCGCGGCCCCCCGTTGACCCCCCGCGAATATTTACGTGAGGAAAATATTATCTTTTTTGTAGTTTTTTGATTTGAGAAACTCAGTTTTTCTTGGAAAATACATTATCCTTGAAAATTTTATTAAAATTCACACGCATTTAAATGCGGGGGGGGGGGCCGCGGGTAGGAGCCCCCCGGGTGGGTAGCGGGTAGCCCGCTTCTTCACCCGCCCAAATGGAAACCCTACTCTTCATTAGTAGATTTGCAAAGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39767</snp_id>
        <super_contig>c014301193.Contig1</super_contig>
        <contig_pos>37751</contig_pos>
        <strand>+</strand>
        <context>CCCTCGCCAT[A/C]AGAATCAGAG</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>GCCACCCCGTGCCGCCATAGACGCTACCCGAAGAGGTTGACCCTCGCCAT</left_flank>
        <right_flank>AGAATCAGAGCTACCAGAAACAAACAATTAAAGTACTATTTTGTCAAAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGTAGCCCGCTTCTTCACCCGCCCAAATGGAAACCCTACTCTTCATTAGTAGATTTGCAAAGTTTCATGTTCATATGTCAATTTTTTCAAAGTTGGCACTACATTCTGTACACTTATAATACTTTGATTTTTTCCTGTATTTGGCGGATCCTTGAGAGCAAGCAAGCGAGCCAGGAATACTATTTCTAGTGAAAATTATGATGCCTACGTCATGGTGCCTAGAAGATCGTAGTGTCAGATTACCCGAATAAGATGTAGACCTTTCTGATACGGAAGAACATGTTCCAACTTGTTCCCCAAAAAAAGGATGACCTGTCTAGGGTCAGATGACAATCCGATGAGGGATTCCGTGCGAGGAAATGTTTGAGCACATAGTCCAGTTTGTTTTCACAAAAATTTGGGTGCTCTCAAAAAACTTTACCCCCCGGAACGGGACAATTTGCCGGCAGGCCACCCCGTGCCGCCATAGACGCTACCCGAAGAGGTTGACCCTCGCCATCAGAATCAGAGCTACCAGAAACAAACAATTAAAGTACTATTTTGTCAAAAATCTCTTTGATAAAGTCCTATCAAAAGTTGACCCGGATTGGGCTGGTTCCGAAAAGTTATGGCGTATTTATTTTGTTACAGAACTTTTGGCCCACCATCTAATCCTCTAATTTTCAGTCCTTGCCGTGTCCTCCAATTTATTTTTTCACCGAAAACATTCTCGTTTTCCCGACAGACGGTTTTTGGTATAGTTATTTAAGTGCCGTGAATTTACATACAAATGGAATTTTTCTATTTCAAATTCTCTTCTTTTCCGTCTGCTGTCTCTACTATCTCTTCTATGCCAAATCATCTCAAGTGTCTTCTGAAACTCGAAGTCTTCAGATTCGCTCATTTTTCGGATTCATTCTTCAAATCACTATTCCAATTGTGTTGGTTCTGATTCCAATAATTCTAGTAAAAAATAGTAATACAAATCCAGAAAAATTCGATCAATTGAAAACTAATTTCA</canonical>
            <polymorphic>GGTAGCCCGCTTCTTCACCCGCCCAAATGGAAACCCTACTCTTCATTAGTAGATTTGCAAAGTTTCATGTTCATATGTCAATTTTTTCAAAGTTGGCACTACATTCTGTACACTTATAATACTTTGATTTTTTCCTGTATTTGGCGGATCCTTGAGAGCAAGCAAGCGAGCCAGGAATACTATTTCTAGTGAAAATTATGATGCCTACGTCATGGTGCCTAGAAGATCGTAGTGTCAGATTACCCGAATAAGATGTAGACCTTTCTGATACGGAAGAACATGTTCCAACTTGTTCCCCAAAAAAAGGATGACCTGTCTAGGGTCAGATGACAATCCGATGAGGGATTCCGTGCGAGGAAATGTTTGAGCACATAGTCCAGTTTGTTTTCACAAAAATTTGGGTGCTCTCAAAAAACTTTACCCCCCGGAACGGGACAATTTGCCGGCAGGCCACCCCGTGCCGCCATAGACGCTACCCGAAGAGGTTGACCCTCGCCATMAGAATCAGAGCTACCAGAAACAAACAATTAAAGTACTATTTTGTCAAAAATCTCTTTGATAAAGTCCTATCAAAAGTTGACCCGGATTGGGCTGGTTCCGAAAAGTTATGGCGTATTTATTTTGTTACAGAACTTTTGGCCCACCATCTAATCCTCTAATTTTCAGTCCTTGCCGTGTCCTCCAATTTATTTTTTCACCGAAAACATTCTCGTTTTCCCGACAGACGGTTTTTGGTATAGTTATTTAAGTGCCGTGAATTTACATACAAATGGAATTTTTCTATTTCAAATTCTCTTCTTTTCCGTCTGCTGTCTCTACTATCTCTTCTATGCCAAATCATCTCAAGTGTCTTCTGAAACTCGAAGTCTTCAGATTCGCTCATTTTTCGGATTCATTCTTCAAATCACTATTCCAATTGTGTTGGTTCTGATTCCAATAATTCTAGTAAAAAATAGTAATACAAATCCAGAAAAATTCGATCAATTGAAAACTAATTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>256 237 165 92 71 59 40 29 17 17 11 6</canonical_bands>
                <polymorphic_bands>256 237 171 92 71 59 40 29 17 17 11</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CATAGTCCAGTTTGTTTTCACA</pcr_primer_p1>
		<pcr_primer_p2>AAAATAAATACGCCATAACTTTTC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CATAGTCCAGTTTGTTTTCACAAAAATTTGGGTGCTCTCAAAAAACTTTACCCCCCGGAACGGGACAATTTGCCGGCAGGCCACCCCGTGCCGCCATAGACGCTACCCGAAGAGGTTGACCCTCGCCATCAGAATCAGAGCTACCAGAAACAAACAATTAAAGTACTATTTTGTCAAAAATCTCTTTGATAAAGTCCTATCAAAAGTTGACCCGGATTGGGCTGGTTCCGAAAAGTTATGGCGTATTTATTTT</canonical_amplicon>
		<polymorphic_amplicon>CATAGTCCAGTTTGTTTTCACAAAAATTTGGGTGCTCTCAAAAAACTTTACCCCCCGGAACGGGACAATTTGCCGGCAGGCCACCCCGTGCCGCCATAGACGCTACCCGAAGAGGTTGACCCTCGCCATMAGAATCAGAGCTACCAGAAACAAACAATTAAAGTACTATTTTGTCAAAAATCTCTTTGATAAAGTCCTATCAAAAGTTGACCCGGATTGGGCTGGTTCCGAAAAGTTATGGCGTATTTATTTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39768</snp_id>
        <super_contig>c014301193.Contig1</super_contig>
        <contig_pos>44121</contig_pos>
        <strand>+</strand>
        <context>TCTCTCAGTT[C/T]TTTTTCTCGA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGCTAGAAATTCTTCGATTTTCGTCATTTTTTCCTCAATTTCTCTCAGTT</left_flank>
        <right_flank>TTTTTCTCGATTTTCTTCGATTTTCCTCCTCAAATTCCTAAATTCTTCAG</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTTTCTAGCTGAAAATGCTCTGAAATCGCTCAGAAAACTTTAAAAATGTATTTTTTTTATTTTTCAATGGCGTATTATGCAAACTTGTTATTGGCGTATCACCACGAAACTTAGAGGTACTGTAGATTTTTTGCGCGCGTAAAATTAAATTTCGAATTGTTTCGGTGGATTCCTCATCATTTTGGGTCATTTGAACATTTTTCGGCCGCTTTTCTCCGGTTTTTCTCGATTTTTAATGATTTTCTGTTGTTTGCACTGAATTTCTAAGCGAACAGCACGTATCCAATGCGTTTTCCTGTCGAAAATGGGGTATTTTTCAGCAAAATATCAGTGTTATTCGATTTGCGTCATTTTTTCACGATTTTTCGGATTTTCCAACGAATTTTGGCGATTTTTAATGCGCTTTTGTTTAAATAGGACATGTTCAGTGCGCTATCCGCGCGGAAAATCGCTAGAAATTCTTCGATTTTCGTCATTTTTTCCTCAATTTCTCTCAGTTTTTTTTCTCGATTTTCTTCGATTTTCCTCCTCAAATTCCTAAATTCTTCAGGTATGAATGGTCAAACAGAGCGTTGCGACCGTACTGCCTACGTATCGGGTCTGCAGTCGACGGTCTCCGACATTGAGCTCTTTGAAGTGTTCAATCGTGTCGCCCATGTCGAGAAGGTCATCGTGAGAAGTGGAACCATTAGACATGCACTTGTCGTCTTCAAGTACGTGGCCTTTTTTGACTTCTGGACCTAAAAATCACATTTTTCAGAACTGTAGAAGGCCTGTATGAAGTCCTCAACAACTTCCAAGGAACCAGCCTCCACGGTCGACAACTTCACATCCGTCCGCTCCGAGAAAGTTCTCACAGTGGGAACGGCGGCGGTGGCCGAGTCCAGAAGCCCTACCGCCCGTCCGCAGCCCAGAATTCCACGTGTACATATCGCCAGCACCCAGCGAGCTATCAGCCAAATCCCCGTGGCTTCAGGAATTCGTCGGGAAGCACGTCTTC</canonical>
            <polymorphic>GTTTCTAGCTGAAAATGCTCTGAAATCGCTCAGAAAACTTTAAAAATGTATTTTTTTTATTTTTCAATGGCGTATTATGCAAACTTGTTATTGGCGTATCACCACGAAACTTAGAGGTACTGTAGATTTTTTGCGCGCGTAAAATTAAATTTCGAATTGTTTCGGTGGATTCCTCATCATTTTGGGTCATTTGAACATTTTTCGGCCGCTTTTCTCCGGTTTTTCTCGATTTTTAATGATTTTCTGTTGTTTGCACTGAATTTCTAAGCGAACAGCACGTATCCAATGCGTTTTCCTGTCGAAAATGGGGTATTTTTCAGCAAAATATCAGTGTTATTCGATTTGCGTCATTTTTTCACGATTTTTCGGATTTTCCAACGAATTTTGGCGATTTTTAATGCGCTTTTGTTTAAATAGGACATGTTCAGTGCGCTATCCGCGCGGAAAATCGCTAGAAATTCTTCGATTTTCGTCATTTTTTCCTCAATTTCTCTCAGTTYTTTTTCTCGATTTTCTTCGATTTTCCTCCTCAAATTCCTAAATTCTTCAGGTATGAATGGTCAAACAGAGCGTTGCGACCGTACTGCCTACGTATCGGGTCTGCAGTCGACGGTCTCCGACATTGAGCTCTTTGAAGTGTTCAATCGTGTCGCCCATGTCGAGAAGGTCATCGTGAGAAGTGGAACCATTAGACATGCACTTGTCGTCTTCAAGTACGTGGCCTTTTTTGACTTCTGGACCTAAAAATCACATTTTTCAGAACTGTAGAAGGCCTGTATGAAGTCCTCAACAACTTCCAAGGAACCAGCCTCCACGGTCGACAACTTCACATCCGTCCGCTCCGAGAAAGTTCTCACAGTGGGAACGGCGGCGGTGGCCGAGTCCAGAAGCCCTACCGCCCGTCCGCAGCCCAGAATTCCACGTGTACATATCGCCAGCACCCAGCGAGCTATCAGCCAAATCCCCGTGGCTTCAGGAATTCGTCGGGAAGCACGTCTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTCAGCAAAATATCAGTGTT</pcr_primer_p1>
		<pcr_primer_p2>ACCATTCATACCTGAAGAATTTA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTTTTCAGCAAAATATCAGTGTTATTCGATTTGCGTCATTTTTTCACGATTTTTCGGATTTTCCAACGAATTTTGGCGATTTTTAATGCGCTTTTGTTTAAATAGGACATGTTCAGTGCGCTATCCGCGCGGAAAATCGCTAGAAATTCTTCGATTTTCGTCATTTTTTCCTCAATTTCTCTCAGTTTTTTTTCTCGATTTTCTTCGATTTTCCTCCTCAAATTCCTAAATTCTTCAGGTATGAATGGT</canonical_amplicon>
		<polymorphic_amplicon>TTTTTCAGCAAAATATCAGTGTTATTCGATTTGCGTCATTTTTTCACGATTTTTCGGATTTTCCAACGAATTTTGGCGATTTTTAATGCGCTTTTGTTTAAATAGGACATGTTCAGTGCGCTATCCGCGCGGAAAATCGCTAGAAATTCTTCGATTTTCGTCATTTTTTCCTCAATTTCTCTCAGTTYTTTTTCTCGATTTTCTTCGATTTTCCTCCTCAAATTCCTAAATTCTTCAGGTATGAATGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39769</snp_id>
        <super_contig>c014301193.Contig1</super_contig>
        <contig_pos>44215</contig_pos>
        <strand>+</strand>
        <context>CTGCCTACGT[A/C]TCGGGTCTGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TCTTCAGGTATGAATGGTCAAACAGAGCGTTGCGACCGTACTGCCTACGT</left_flank>
        <right_flank>TCGGGTCTGCAGTCGACGGTCTCCGACATTGAGCTCTTTGAAGTGTTCAA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CGTATCACCACGAAACTTAGAGGTACTGTAGATTTTTTGCGCGCGTAAAATTAAATTTCGAATTGTTTCGGTGGATTCCTCATCATTTTGGGTCATTTGAACATTTTTCGGCCGCTTTTCTCCGGTTTTTCTCGATTTTTAATGATTTTCTGTTGTTTGCACTGAATTTCTAAGCGAACAGCACGTATCCAATGCGTTTTCCTGTCGAAAATGGGGTATTTTTCAGCAAAATATCAGTGTTATTCGATTTGCGTCATTTTTTCACGATTTTTCGGATTTTCCAACGAATTTTGGCGATTTTTAATGCGCTTTTGTTTAAATAGGACATGTTCAGTGCGCTATCCGCGCGGAAAATCGCTAGAAATTCTTCGATTTTCGTCATTTTTTCCTCAATTTCTCTCAGTTTTTTTTCTCGATTTTCTTCGATTTTCCTCCTCAAATTCCTAAATTCTTCAGGTATGAATGGTCAAACAGAGCGTTGCGACCGTACTGCCTACGTATCGGGTCTGCAGTCGACGGTCTCCGACATTGAGCTCTTTGAAGTGTTCAATCGTGTCGCCCATGTCGAGAAGGTCATCGTGAGAAGTGGAACCATTAGACATGCACTTGTCGTCTTCAAGTACGTGGCCTTTTTTGACTTCTGGACCTAAAAATCACATTTTTCAGAACTGTAGAAGGCCTGTATGAAGTCCTCAACAACTTCCAAGGAACCAGCCTCCACGGTCGACAACTTCACATCCGTCCGCTCCGAGAAAGTTCTCACAGTGGGAACGGCGGCGGTGGCCGAGTCCAGAAGCCCTACCGCCCGTCCGCAGCCCAGAATTCCACGTGTACATATCGCCAGCACCCAGCGAGCTATCAGCCAAATCCCCGTGGCTTCAGGAATTCGTCGGGAAGCACGTCTTCATTCAACGGAGGAGGAGGAGCGAATGGAAGACGTCGGAATCAGGGATACGTCCAGAACGGGCGTGGAGGATTCCAGAACGAGACGTATTCTGGA</canonical>
            <polymorphic>CGTATCACCACGAAACTTAGAGGTACTGTAGATTTTTTGCGCGCGTAAAATTAAATTTCGAATTGTTTCGGTGGATTCCTCATCATTTTGGGTCATTTGAACATTTTTCGGCCGCTTTTCTCCGGTTTTTCTCGATTTTTAATGATTTTCTGTTGTTTGCACTGAATTTCTAAGCGAACAGCACGTATCCAATGCGTTTTCCTGTCGAAAATGGGGTATTTTTCAGCAAAATATCAGTGTTATTCGATTTGCGTCATTTTTTCACGATTTTTCGGATTTTCCAACGAATTTTGGCGATTTTTAATGCGCTTTTGTTTAAATAGGACATGTTCAGTGCGCTATCCGCGCGGAAAATCGCTAGAAATTCTTCGATTTTCGTCATTTTTTCCTCAATTTCTCTCAGTTTTTTTTCTCGATTTTCTTCGATTTTCCTCCTCAAATTCCTAAATTCTTCAGGTATGAATGGTCAAACAGAGCGTTGCGACCGTACTGCCTACGTMTCGGGTCTGCAGTCGACGGTCTCCGACATTGAGCTCTTTGAAGTGTTCAATCGTGTCGCCCATGTCGAGAAGGTCATCGTGAGAAGTGGAACCATTAGACATGCACTTGTCGTCTTCAAGTACGTGGCCTTTTTTGACTTCTGGACCTAAAAATCACATTTTTCAGAACTGTAGAAGGCCTGTATGAAGTCCTCAACAACTTCCAAGGAACCAGCCTCCACGGTCGACAACTTCACATCCGTCCGCTCCGAGAAAGTTCTCACAGTGGGAACGGCGGCGGTGGCCGAGTCCAGAAGCCCTACCGCCCGTCCGCAGCCCAGAATTCCACGTGTACATATCGCCAGCACCCAGCGAGCTATCAGCCAAATCCCCGTGGCTTCAGGAATTCGTCGGGAAGCACGTCTTCATTCAACGGAGGAGGAGGAGCGAATGGAAGACGTCGGAATCAGGGATACGTCCAGAACGGGCGTGGAGGATTCCAGAACGAGACGTATTCTGGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>YACGTR</site>
                <isoschizomers>
                    <enzyme>BsaAI</enzyme>
                    <enzyme>BstBAI</enzyme>
                </isoschizomers>
                <canonical_bands>313 205 184 172 126</canonical_bands>
                <polymorphic_bands>439 205 184 172</polymorphic_bands>
            </assay>
            <assay>
                <site>TACGTA</site>
                <isoschizomers>
                    <enzyme>BstSNI</enzyme>
                    <enzyme>Eco105I</enzyme>
                    <enzyme>SnaBI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTAAATTCTTCAGGTATGAATG</pcr_primer_p1>
		<pcr_primer_p2>CTTCATACAGGCCTTCTACAGT</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>CCTAAATTCTTCAGGTATGAATGGTCAAACAGAGCGTTGCGACCGTACTGCCTACGTATCGGGTCTGCAGTCGACGGTCTCCGACATTGAGCTCTTTGAAGTGTTCAATCGTGTCGCCCATGTCGAGAAGGTCATCGTGAGAAGTGGAACCATTAGACATGCACTTGTCGTCTTCAAGTACGTGGCCTTTTTTGACTTCTGGACCTAAAAATCACATTTTTCAGAACTGTAGAAGGCCTGTATGAAG</canonical_amplicon>
		<polymorphic_amplicon>CCTAAATTCTTCAGGTATGAATGGTCAAACAGAGCGTTGCGACCGTACTGCCTACGTMTCGGGTCTGCAGTCGACGGTCTCCGACATTGAGCTCTTTGAAGTGTTCAATCGTGTCGCCCATGTCGAGAAGGTCATCGTGAGAAGTGGAACCATTAGACATGCACTTGTCGTCTTCAAGTACGTGGCCTTTTTTGACTTCTGGACCTAAAAATCACATTTTTCAGAACTGTAGAAGGCCTGTATGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39770</snp_id>
        <super_contig>c014301193.Contig1</super_contig>
        <contig_pos>44531</contig_pos>
        <strand>+</strand>
        <context>CCGTCCGCAG[A/C]YCAGAATTCC</context>
        <canonical_base>C</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TGGGAACGGCGGCGGTGGCCGAGTCCAGAAGCCCTACCGCCCGTCCGCAG</left_flank>
        <right_flank>CCAGAATTCCACGTGTACATATCGCCAGCACCCAGCGAGCTATCAGCCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAAATAGGACATGTTCAGTGCGCTATCCGCGCGGAAAATCGCTAGAAATTCTTCGATTTTCGTCATTTTTTCCTCAATTTCTCTCAGTTTTTTTTCTCGATTTTCTTCGATTTTCCTCCTCAAATTCCTAAATTCTTCAGGTATGAATGGTCAAACAGAGCGTTGCGACCGTACTGCCTACGTATCGGGTCTGCAGTCGACGGTCTCCGACATTGAGCTCTTTGAAGTGTTCAATCGTGTCGCCCATGTCGAGAAGGTCATCGTGAGAAGTGGAACCATTAGACATGCACTTGTCGTCTTCAAGTACGTGGCCTTTTTTGACTTCTGGACCTAAAAATCACATTTTTCAGAACTGTAGAAGGCCTGTATGAAGTCCTCAACAACTTCCAAGGAACCAGCCTCCACGGTCGACAACTTCACATCCGTCCGCTCCGAGAAAGTTCTCACAGTGGGAACGGCGGCGGTGGCCGAGTCCAGAAGCCCTACCGCCCGTCCGCAGCCCAGAATTCCACGTGTACATATCGCCAGCACCCAGCGAGCTATCAGCCAAATCCCCGTGGCTTCAGGAATTCGTCGGGAAGCACGTCTTCATTCAACGGAGGAGGAGGAGCGAATGGAAGACGTCGGAATCAGGGATACGTCCAGAACGGGCGTGGAGGATTCCAGAACGAGACGTATTCTGGAGCGATGAGCACACTTTTCAACGCGTATCCACAGTATGGGGGATTTCATCAACCGGCGGCTCATCACCATCAGACGCAACATGATTTTCACTTTGAGAATCATGCCGAGGGGGCGAAAAGGTGCGATTTTGGCTTGGAATAGGTCGTAATTAGAGTTAGAAAGCCCAGAAATCGTCCTAATTGCATGAAAATTGACCAAAATTCATTAAAAATCAGCTATCAACATGAAAAATCGGCCAAAACCCATGAAAAATGAGCCAAGATTTAGCAAAAATGGGCTCAAAATTCAGAAAATCGTCCAATATTCAATATTTTCC</canonical>
            <polymorphic>TAAATAGGACATGTTCAGTGCGCTATCCGCGCGGAAAATCGCTAGAAATTCTTCGATTTTCGTCATTTTTTCCTCAATTTCTCTCAGTTTTTTTTCTCGATTTTCTTCGATTTTCCTCCTCAAATTCCTAAATTCTTCAGGTATGAATGGTCAAACAGAGCGTTGCGACCGTACTGCCTACGTATCGGGTCTGCAGTCGACGGTCTCCGACATTGAGCTCTTTGAAGTGTTCAATCGTGTCGCCCATGTCGAGAAGGTCATCGTGAGAAGTGGAACCATTAGACATGCACTTGTCGTCTTCAAGTACGTGGCCTTTTTTGACTTCTGGACCTAAAAATCACATTTTTCAGAACTGTAGAAGGCCTGTATGAAGTCCTCAACAACTTCCAAGGAACCAGCCTCCACGGTCGACAACTTCACATCCGTCCGCTCCGAGAAAGTTCTCACAGTGGGAACGGCGGCGGTGGCCGAGTCCAGAAGCCCTACCGCCCGTCCGCAGMCCAGAATTCCACGTGTACATATCGCCAGCACCCAGCGAGCTATCAGCCAAATCCCCGTGGCTTCAGGAATTCGTCGGGAAGCACGTCTTCATTCAACGGAGGAGGAGGAGCGAATGGAAGACGTCGGAATCAGGGATACGTCCAGAACGGGCGTGGAGGATTCCAGAACGAGACGTATTCTGGAGCGATGAGCACACTTTTCAACGCGTATCCACAGTATGGGGGATTTCATCAACCGGCGGCTCATCACCATCAGACGCAACATGATTTTCACTTTGAGAATCATGCCGAGGGGGCGAAAAGGTGCGATTTTGGCTTGGAATAGGTCGTAATTAGAGTTAGAAAGCCCAGAAATCGTCCTAATTGCATGAAAATTGACCAAAATTCATTAAAAATCAGCTATCAACATGAAAAATCGGCCAAAACCCATGAAAAATGAGCCAAGATTTAGCAAAAATGGGCTCAAAATTCAGAAAATCGTCCAATATTCAATATTTTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCNGC</site>
                <isoschizomers>
                    <enzyme>BthCI</enzyme>
                    <enzyme>Fnu4HI</enzyme>
                    <enzyme>Fsp4HI</enzyme>
                    <enzyme>ItaI</enzyme>
                    <enzyme>SatI</enzyme>
                </isoschizomers>
                <canonical_bands>461 258 243 38</canonical_bands>
                <polymorphic_bands>461 281 258</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>217 182 94 73 69 53 51 40 39 36 31 21 21 20 19 14 13 7</canonical_bands>
                <polymorphic_bands>217 182 94 73 69 59 53 51 39 36 31 21 21 20 14 13 7</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCGAGAAAGTTCTCACAGT</pcr_primer_p1>
		<pcr_primer_p2>AATACGTCTCGTTCTGGAATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCGAGAAAGTTCTCACAGTGGGAACGGCGGCGGTGGCCGAGTCCAGAAGCCCTACCGCCCGTCCGCAGCCCAGAATTCCACGTGTACATATCGCCAGCACCCAGCGAGCTATCAGCCAAATCCCCGTGGCTTCAGGAATTCGTCGGGAAGCACGTCTTCATTCAACGGAGGAGGAGGAGCGAATGGAAGACGTCGGAATCAGGGATACGTCCAGAACGGGCGTGGAGGATTCCAGAACGAGACGTATT</canonical_amplicon>
		<polymorphic_amplicon>TCCGAGAAAGTTCTCACAGTGGGAACGGCGGCGGTGGCCGAGTCCAGAAGCCCTACCGCCCGTCCGCAGMCCAGAATTCCACGTGTACATATCGCCAGCACCCAGCGAGCTATCAGCCAAATCCCCGTGGCTTCAGGAATTCGTCGGGAAGCACGTCTTCATTCAACGGAGGAGGAGGAGCGAATGGAAGACGTCGGAATCAGGGATACGTCCAGAACGGGCGTGGAGGATTCCAGAACGAGACGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39771</snp_id>
        <super_contig>c014301193.Contig1</super_contig>
        <contig_pos>44532</contig_pos>
        <strand>+</strand>
        <context>CGTCCGCAGM[C/T]CAGAATTCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGAACGGCGGCGGTGGCCGAGTCCAGAAGCCCTACCGCCCGTCCGCAGC</left_flank>
        <right_flank>CAGAATTCCACGTGTACATATCGCCAGCACCCAGCGAGCTATCAGCCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATAGGACATGTTCAGTGCGCTATCCGCGCGGAAAATCGCTAGAAATTCTTCGATTTTCGTCATTTTTTCCTCAATTTCTCTCAGTTTTTTTTCTCGATTTTCTTCGATTTTCCTCCTCAAATTCCTAAATTCTTCAGGTATGAATGGTCAAACAGAGCGTTGCGACCGTACTGCCTACGTATCGGGTCTGCAGTCGACGGTCTCCGACATTGAGCTCTTTGAAGTGTTCAATCGTGTCGCCCATGTCGAGAAGGTCATCGTGAGAAGTGGAACCATTAGACATGCACTTGTCGTCTTCAAGTACGTGGCCTTTTTTGACTTCTGGACCTAAAAATCACATTTTTCAGAACTGTAGAAGGCCTGTATGAAGTCCTCAACAACTTCCAAGGAACCAGCCTCCACGGTCGACAACTTCACATCCGTCCGCTCCGAGAAAGTTCTCACAGTGGGAACGGCGGCGGTGGCCGAGTCCAGAAGCCCTACCGCCCGTCCGCAGCCCAGAATTCCACGTGTACATATCGCCAGCACCCAGCGAGCTATCAGCCAAATCCCCGTGGCTTCAGGAATTCGTCGGGAAGCACGTCTTCATTCAACGGAGGAGGAGGAGCGAATGGAAGACGTCGGAATCAGGGATACGTCCAGAACGGGCGTGGAGGATTCCAGAACGAGACGTATTCTGGAGCGATGAGCACACTTTTCAACGCGTATCCACAGTATGGGGGATTTCATCAACCGGCGGCTCATCACCATCAGACGCAACATGATTTTCACTTTGAGAATCATGCCGAGGGGGCGAAAAGGTGCGATTTTGGCTTGGAATAGGTCGTAATTAGAGTTAGAAAGCCCAGAAATCGTCCTAATTGCATGAAAATTGACCAAAATTCATTAAAAATCAGCTATCAACATGAAAAATCGGCCAAAACCCATGAAAAATGAGCCAAGATTTAGCAAAAATGGGCTCAAAATTCAGAAAATCGTCCAATATTCAATATTTTCCA</canonical>
            <polymorphic>AAATAGGACATGTTCAGTGCGCTATCCGCGCGGAAAATCGCTAGAAATTCTTCGATTTTCGTCATTTTTTCCTCAATTTCTCTCAGTTTTTTTTCTCGATTTTCTTCGATTTTCCTCCTCAAATTCCTAAATTCTTCAGGTATGAATGGTCAAACAGAGCGTTGCGACCGTACTGCCTACGTATCGGGTCTGCAGTCGACGGTCTCCGACATTGAGCTCTTTGAAGTGTTCAATCGTGTCGCCCATGTCGAGAAGGTCATCGTGAGAAGTGGAACCATTAGACATGCACTTGTCGTCTTCAAGTACGTGGCCTTTTTTGACTTCTGGACCTAAAAATCACATTTTTCAGAACTGTAGAAGGCCTGTATGAAGTCCTCAACAACTTCCAAGGAACCAGCCTCCACGGTCGACAACTTCACATCCGTCCGCTCCGAGAAAGTTCTCACAGTGGGAACGGCGGCGGTGGCCGAGTCCAGAAGCCCTACCGCCCGTCCGCAGCYCAGAATTCCACGTGTACATATCGCCAGCACCCAGCGAGCTATCAGCCAAATCCCCGTGGCTTCAGGAATTCGTCGGGAAGCACGTCTTCATTCAACGGAGGAGGAGGAGCGAATGGAAGACGTCGGAATCAGGGATACGTCCAGAACGGGCGTGGAGGATTCCAGAACGAGACGTATTCTGGAGCGATGAGCACACTTTTCAACGCGTATCCACAGTATGGGGGATTTCATCAACCGGCGGCTCATCACCATCAGACGCAACATGATTTTCACTTTGAGAATCATGCCGAGGGGGCGAAAAGGTGCGATTTTGGCTTGGAATAGGTCGTAATTAGAGTTAGAAAGCCCAGAAATCGTCCTAATTGCATGAAAATTGACCAAAATTCATTAAAAATCAGCTATCAACATGAAAAATCGGCCAAAACCCATGAAAAATGAGCCAAGATTTAGCAAAAATGGGCTCAAAATTCAGAAAATCGTCCAATATTCAATATTTTCCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>216 182 94 73 69 53 51 40 40 36 31 21 21 20 19 14 13 7</canonical_bands>
                <polymorphic_bands>216 182 94 73 69 59 53 51 40 36 31 21 21 20 14 13 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCCGAGAAAGTTCTCACAGT</pcr_primer_p1>
		<pcr_primer_p2>AATACGTCTCGTTCTGGAATC</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCCGAGAAAGTTCTCACAGTGGGAACGGCGGCGGTGGCCGAGTCCAGAAGCCCTACCGCCCGTCCGCAGCCCAGAATTCCACGTGTACATATCGCCAGCACCCAGCGAGCTATCAGCCAAATCCCCGTGGCTTCAGGAATTCGTCGGGAAGCACGTCTTCATTCAACGGAGGAGGAGGAGCGAATGGAAGACGTCGGAATCAGGGATACGTCCAGAACGGGCGTGGAGGATTCCAGAACGAGACGTATT</canonical_amplicon>
		<polymorphic_amplicon>TCCGAGAAAGTTCTCACAGTGGGAACGGCGGCGGTGGCCGAGTCCAGAAGCCCTACCGCCCGTCCGCAGCYCAGAATTCCACGTGTACATATCGCCAGCACCCAGCGAGCTATCAGCCAAATCCCCGTGGCTTCAGGAATTCGTCGGGAAGCACGTCTTCATTCAACGGAGGAGGAGGAGCGAATGGAAGACGTCGGAATCAGGGATACGTCCAGAACGGGCGTGGAGGATTCCAGAACGAGACGTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39772</snp_id>
        <super_contig>c014301193.Contig1</super_contig>
        <contig_pos>45934</contig_pos>
        <strand>+</strand>
        <context>AAATGCGAAG[A/G]ATTCGACACT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGCTCCACTGGCGTCTCCGCAATTCTCGCCAATAAAACCGAAATGCGAAG</left_flank>
        <right_flank>ATTCGACACTGCTGACGATGACGTGTTCGGAGGATCCGGTATGGATCCAC</right_flank>
        <qual_score>131</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAATCCGTCGTTGTTCTATGAGCAATATCCACGTACATCGTCGCCAGTCGTGTTCGCGCCCAATTCGAGTAGGTTTTCATTATTTTAGTTTTTTAATATCCCATTTTCCAGTCCCCAATACGGACAAGAATCCATCACCACACGATCCAGCTGTGGTTGCCTACAGTCGTCTCCGCATCCCACCTCAATCTGCTTTCGATCATCTCTCTCCAATCGATACCAACAATTGCTCATTCATAACGAAGCATCTGGGTCCAAACGATCATCAAAAGCGAGATTTTACGAATGAGGAGCTCTCCGATATGATTGTTTCCACTGGAAATCTTCGTATGAACCCGATGATTCAGGACGCCGCCGCTTCCGAAGCTTCGCCCCCAATCCACGACGAGACTCCAGCTCCATGGTCTCCGTTGAAACGTGTTCGTGCTGAAAGTGGTTCTCTGTCGGCTGCTCCACTGGCGTCTCCGCAATTCTCGCCAATAAAACCGAAATGCGAAGAATTCGACACTGCTGACGATGACGTGTTCGGAGGATCCGGTATGGATCCACAAAAGTCGGAGAATGTTGAAAAGATGGATGTGAAGCAGCAGCAGAAGATGTCCGACTTTGAGGACATCAATAACAGCCGTCTGCCGTCGAATTCGCATTCCGCAGCTCCGAGTTCAGATCAGAAGAGTTTTGTGTTTCCGCCGGTAAGAGTTGATTGGGTCTAAAACGAAGGAAATTCTTTAGCTTTCCAGGAATACCCAATGTGCCGTCACTCGTCAGTCCCATCGATTGCTCATCTCGTCGGCGATCTCTCGGATTTCTGTCCACCGTCTCCGCACTTGACCGAAAAGCTGGCTATCGAAGAAGATGTTGAGAATCCAGAAGACGTCGACAAGACTTCAGATGACAAATCATCATCTTCTAAGGCTGACGACGTCGCTGTCGTTCCTGGAGCCACTGGGATTCAGAAGTCCGACGTCATTGTCTAATAATCTGTGTCATATATTTATA</canonical>
            <polymorphic>TCAATCCGTCGTTGTTCTATGAGCAATATCCACGTACATCGTCGCCAGTCGTGTTCGCGCCCAATTCGAGTAGGTTTTCATTATTTTAGTTTTTTAATATCCCATTTTCCAGTCCCCAATACGGACAAGAATCCATCACCACACGATCCAGCTGTGGTTGCCTACAGTCGTCTCCGCATCCCACCTCAATCTGCTTTCGATCATCTCTCTCCAATCGATACCAACAATTGCTCATTCATAACGAAGCATCTGGGTCCAAACGATCATCAAAAGCGAGATTTTACGAATGAGGAGCTCTCCGATATGATTGTTTCCACTGGAAATCTTCGTATGAACCCGATGATTCAGGACGCCGCCGCTTCCGAAGCTTCGCCCCCAATCCACGACGAGACTCCAGCTCCATGGTCTCCGTTGAAACGTGTTCGTGCTGAAAGTGGTTCTCTGTCGGCTGCTCCACTGGCGTCTCCGCAATTCTCGCCAATAAAACCGAAATGCGAAGRATTCGACACTGCTGACGATGACGTGTTCGGAGGATCCGGTATGGATCCACAAAAGTCGGAGAATGTTGAAAAGATGGATGTGAAGCAGCAGCAGAAGATGTCCGACTTTGAGGACATCAATAACAGCCGTCTGCCGTCGAATTCGCATTCCGCAGCTCCGAGTTCAGATCAGAAGAGTTTTGTGTTTCCGCCGGTAAGAGTTGATTGGGTCTAAAACGAAGGAAATTCTTTAGCTTTCCAGGAATACCCAATGTGCCGTCACTCGTCAGTCCCATCGATTGCTCATCTCGTCGGCGATCTCTCGGATTTCTGTCCACCGTCTCCGCACTTGACCGAAAAGCTGGCTATCGAAGAAGATGTTGAGAATCCAGAAGACGTCGACAAGACTTCAGATGACAAATCATCATCTTCTAAGGCTGACGACGTCGCTGTCGTTCCTGGAGCCACTGGGATTCAGAAGTCCGACGTCATTGTCTAATAATCTGTGTCATATATTTATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>499 277 140 84</canonical_bands>
                <polymorphic_bands>639 277 84</polymorphic_bands>
            </assay>
            <assay>
                <site>GAATTC</site>
                <isoschizomers>
                    <enzyme>EcoRI</enzyme>
                    <enzyme>FunII</enzyme>
                </isoschizomers>
                <canonical_bands>499 361 140</canonical_bands>
                <polymorphic_bands>639 361</polymorphic_bands>
            </assay>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>277 244 163 140 84 62 30</canonical_bands>
                <polymorphic_bands>277 244 170 163 84 62</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GTATGAACCCGATGATTCAG</pcr_primer_p1>
		<pcr_primer_p2>ACATCCATCTTTTCAACATTCT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>GTATGAACCCGATGATTCAGGACGCCGCCGCTTCCGAAGCTTCGCCCCCAATCCACGACGAGACTCCAGCTCCATGGTCTCCGTTGAAACGTGTTCGTGCTGAAAGTGGTTCTCTGTCGGCTGCTCCACTGGCGTCTCCGCAATTCTCGCCAATAAAACCGAAATGCGAAGAATTCGACACTGCTGACGATGACGTGTTCGGAGGATCCGGTATGGATCCACAAAAGTCGGAGAATGTTGAAAAGATGGATGT</canonical_amplicon>
		<polymorphic_amplicon>GTATGAACCCGATGATTCAGGACGCCGCCGCTTCCGAAGCTTCGCCCCCAATCCACGACGAGACTCCAGCTCCATGGTCTCCGTTGAAACGTGTTCGTGCTGAAAGTGGTTCTCTGTCGGCTGCTCCACTGGCGTCTCCGCAATTCTCGCCAATAAAACCGAAATGCGAAGRATTCGACACTGCTGACGATGACGTGTTCGGAGGATCCGGTATGGATCCACAAAAGTCGGAGAATGTTGAAAAGATGGATGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39773</snp_id>
        <super_contig>c014301193.Contig1</super_contig>
        <contig_pos>45972</contig_pos>
        <strand>+</strand>
        <context>CGGAGGATCC[A/G]GTATGGATCC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGAAATGCGAAGAATTCGACACTGCTGACGATGACGTGTTCGGAGGATCC</left_flank>
        <right_flank>GTATGGATCCACAAAAGTCGGAGAATGTTGAAAAGATGGATGTGAAGCAG</right_flank>
        <qual_score>133</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGTCGCCAGTCGTGTTCGCGCCCAATTCGAGTAGGTTTTCATTATTTTAGTTTTTTAATATCCCATTTTCCAGTCCCCAATACGGACAAGAATCCATCACCACACGATCCAGCTGTGGTTGCCTACAGTCGTCTCCGCATCCCACCTCAATCTGCTTTCGATCATCTCTCTCCAATCGATACCAACAATTGCTCATTCATAACGAAGCATCTGGGTCCAAACGATCATCAAAAGCGAGATTTTACGAATGAGGAGCTCTCCGATATGATTGTTTCCACTGGAAATCTTCGTATGAACCCGATGATTCAGGACGCCGCCGCTTCCGAAGCTTCGCCCCCAATCCACGACGAGACTCCAGCTCCATGGTCTCCGTTGAAACGTGTTCGTGCTGAAAGTGGTTCTCTGTCGGCTGCTCCACTGGCGTCTCCGCAATTCTCGCCAATAAAACCGAAATGCGAAGAATTCGACACTGCTGACGATGACGTGTTCGGAGGATCCGGTATGGATCCACAAAAGTCGGAGAATGTTGAAAAGATGGATGTGAAGCAGCAGCAGAAGATGTCCGACTTTGAGGACATCAATAACAGCCGTCTGCCGTCGAATTCGCATTCCGCAGCTCCGAGTTCAGATCAGAAGAGTTTTGTGTTTCCGCCGGTAAGAGTTGATTGGGTCTAAAACGAAGGAAATTCTTTAGCTTTCCAGGAATACCCAATGTGCCGTCACTCGTCAGTCCCATCGATTGCTCATCTCGTCGGCGATCTCTCGGATTTCTGTCCACCGTCTCCGCACTTGACCGAAAAGCTGGCTATCGAAGAAGATGTTGAGAATCCAGAAGACGTCGACAAGACTTCAGATGACAAATCATCATCTTCTAAGGCTGACGACGTCGCTGTCGTTCCTGGAGCCACTGGGATTCAGAAGTCCGACGTCATTGTCTAATAATCTGTGTCATATATTTATATTCTCAATTTTTCAAATTTTTTGCCACGTTGAGCACTT</canonical>
            <polymorphic>TCGTCGCCAGTCGTGTTCGCGCCCAATTCGAGTAGGTTTTCATTATTTTAGTTTTTTAATATCCCATTTTCCAGTCCCCAATACGGACAAGAATCCATCACCACACGATCCAGCTGTGGTTGCCTACAGTCGTCTCCGCATCCCACCTCAATCTGCTTTCGATCATCTCTCTCCAATCGATACCAACAATTGCTCATTCATAACGAAGCATCTGGGTCCAAACGATCATCAAAAGCGAGATTTTACGAATGAGGAGCTCTCCGATATGATTGTTTCCACTGGAAATCTTCGTATGAACCCGATGATTCAGGACGCCGCCGCTTCCGAAGCTTCGCCCCCAATCCACGACGAGACTCCAGCTCCATGGTCTCCGTTGAAACGTGTTCGTGCTGAAAGTGGTTCTCTGTCGGCTGCTCCACTGGCGTCTCCGCAATTCTCGCCAATAAAACCGAAATGCGAAGAATTCGACACTGCTGACGATGACGTGTTCGGAGGATCCRGTATGGATCCACAAAAGTCGGAGAATGTTGAAAAGATGGATGTGAAGCAGCAGCAGAAGATGTCCGACTTTGAGGACATCAATAACAGCCGTCTGCCGTCGAATTCGCATTCCGCAGCTCCGAGTTCAGATCAGAAGAGTTTTGTGTTTCCGCCGGTAAGAGTTGATTGGGTCTAAAACGAAGGAAATTCTTTAGCTTTCCAGGAATACCCAATGTGCCGTCACTCGTCAGTCCCATCGATTGCTCATCTCGTCGGCGATCTCTCGGATTTCTGTCCACCGTCTCCGCACTTGACCGAAAAGCTGGCTATCGAAGAAGATGTTGAGAATCCAGAAGACGTCGACAAGACTTCAGATGACAAATCATCATCTTCTAAGGCTGACGACGTCGCTGTCGTTCCTGGAGCCACTGGGATTCAGAAGTCCGACGTCATTGTCTAATAATCTGTGTCATATATTTATATTCTCAATTTTTCAAATTTTTTGCCACGTTGAGCACTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>498 347 155</canonical_bands>
                <polymorphic_bands>653 347</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GCTGAAAGTGGTTCTCTGTC</pcr_primer_p1>
		<pcr_primer_p2>CAAAACTCTTCTGATCTGAACTC</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>GCTGAAAGTGGTTCTCTGTCGGCTGCTCCACTGGCGTCTCCGCAATTCTCGCCAATAAAACCGAAATGCGAAGAATTCGACACTGCTGACGATGACGTGTTCGGAGGATCCGGTATGGATCCACAAAAGTCGGAGAATGTTGAAAAGATGGATGTGAAGCAGCAGCAGAAGATGTCCGACTTTGAGGACATCAATAACAGCCGTCTGCCGTCGAATTCGCATTCCGCAGCTCCGAGTTCAGATCAGAAGAGTTTTG</canonical_amplicon>
		<polymorphic_amplicon>GCTGAAAGTGGTTCTCTGTCGGCTGCTCCACTGGCGTCTCCGCAATTCTCGCCAATAAAACCGAAATGCGAAGAATTCGACACTGCTGACGATGACGTGTTCGGAGGATCCRGTATGGATCCACAAAAGTCGGAGAATGTTGAAAAGATGGATGTGAAGCAGCAGCAGAAGATGTCCGACTTTGAGGACATCAATAACAGCCGTCTGCCGTCGAATTCGCATTCCGCAGCTCCGAGTTCAGATCAGAAGAGTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39774</snp_id>
        <super_contig>c014301193.Contig1</super_contig>
        <contig_pos>46247</contig_pos>
        <strand>+</strand>
        <context>CGGATTTCTG[C/T]CCACCGTCTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCGTCAGTCCCATCGATTGCTCATCTCGTCGGCGATCTCTCGGATTTCTG</left_flank>
        <right_flank>CCACCGTCTCCGCACTTGACCGAAAAGCTGGCTATCGAAGAAGATGTTGA</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCACTGGAAATCTTCGTATGAACCCGATGATTCAGGACGCCGCCGCTTCCGAAGCTTCGCCCCCAATCCACGACGAGACTCCAGCTCCATGGTCTCCGTTGAAACGTGTTCGTGCTGAAAGTGGTTCTCTGTCGGCTGCTCCACTGGCGTCTCCGCAATTCTCGCCAATAAAACCGAAATGCGAAGAATTCGACACTGCTGACGATGACGTGTTCGGAGGATCCGGTATGGATCCACAAAAGTCGGAGAATGTTGAAAAGATGGATGTGAAGCAGCAGCAGAAGATGTCCGACTTTGAGGACATCAATAACAGCCGTCTGCCGTCGAATTCGCATTCCGCAGCTCCGAGTTCAGATCAGAAGAGTTTTGTGTTTCCGCCGGTAAGAGTTGATTGGGTCTAAAACGAAGGAAATTCTTTAGCTTTCCAGGAATACCCAATGTGCCGTCACTCGTCAGTCCCATCGATTGCTCATCTCGTCGGCGATCTCTCGGATTTCTGTCCACCGTCTCCGCACTTGACCGAAAAGCTGGCTATCGAAGAAGATGTTGAGAATCCAGAAGACGTCGACAAGACTTCAGATGACAAATCATCATCTTCTAAGGCTGACGACGTCGCTGTCGTTCCTGGAGCCACTGGGATTCAGAAGTCCGACGTCATTGTCTAATAATCTGTGTCATATATTTATATTCTCAATTTTTCAAATTTTTTGCCACGTTGAGCACTTTCTTCCCGCCCCCAACCCCCTCTACACAGCATCTCTCCTGTCAAATATGTTTTATTGAATTCTTGCATTGTGTAAGTGTCCGTTTTTTTATCCCACGTTATCCTCATCTGTTTTGTGTGTCCTTTCCTGTTTTATTCGACTCCGCCCACTTTTGTGGCTCCGCCCCAGCACCCCAAAATCATTGTTTTATTGGTTTCCCCTAGACGATTTTTTAATTGTTTTTTAAAATACACTGTGCGAGTGAGCAAGAAATCCGGTGTGTGTGTGAAATGAAA</canonical>
            <polymorphic>CCACTGGAAATCTTCGTATGAACCCGATGATTCAGGACGCCGCCGCTTCCGAAGCTTCGCCCCCAATCCACGACGAGACTCCAGCTCCATGGTCTCCGTTGAAACGTGTTCGTGCTGAAAGTGGTTCTCTGTCGGCTGCTCCACTGGCGTCTCCGCAATTCTCGCCAATAAAACCGAAATGCGAAGAATTCGACACTGCTGACGATGACGTGTTCGGAGGATCCGGTATGGATCCACAAAAGTCGGAGAATGTTGAAAAGATGGATGTGAAGCAGCAGCAGAAGATGTCCGACTTTGAGGACATCAATAACAGCCGTCTGCCGTCGAATTCGCATTCCGCAGCTCCGAGTTCAGATCAGAAGAGTTTTGTGTTTCCGCCGGTAAGAGTTGATTGGGTCTAAAACGAAGGAAATTCTTTAGCTTTCCAGGAATACCCAATGTGCCGTCACTCGTCAGTCCCATCGATTGCTCATCTCGTCGGCGATCTCTCGGATTTCTGYCCACCGTCTCCGCACTTGACCGAAAAGCTGGCTATCGAAGAAGATGTTGAGAATCCAGAAGACGTCGACAAGACTTCAGATGACAAATCATCATCTTCTAAGGCTGACGACGTCGCTGTCGTTCCTGGAGCCACTGGGATTCAGAAGTCCGACGTCATTGTCTAATAATCTGTGTCATATATTTATATTCTCAATTTTTCAAATTTTTTGCCACGTTGAGCACTTTCTTCCCGCCCCCAACCCCCTCTACACAGCATCTCTCCTGTCAAATATGTTTTATTGAATTCTTGCATTGTGTAAGTGTCCGTTTTTTTATCCCACGTTATCCTCATCTGTTTTGTGTGTCCTTTCCTGTTTTATTCGACTCCGCCCACTTTTGTGGCTCCGCCCCAGCACCCCAAAATCATTGTTTTATTGGTTTCCCCTAGACGATTTTTTAATTGTTTTTTAAAATACACTGTGCGAGTGAGCAAGAAATCCGGTGTGTGTGTGAAATGAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTNNAC</site>
                <isoschizomers>
                    <enzyme>Hpy8I</enzyme>
                </isoschizomers>
                <canonical_bands>501 434 65</canonical_bands>
                <polymorphic_bands>566 434</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCAGATCAGAAGAGTTTTGTGT</pcr_primer_p1>
		<pcr_primer_p2>GATGATGATTTGTCATCTGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>TTCAGATCAGAAGAGTTTTGTGTTTCCGCCGGTAAGAGTTGATTGGGTCTAAAACGAAGGAAATTCTTTAGCTTTCCAGGAATACCCAATGTGCCGTCACTCGTCAGTCCCATCGATTGCTCATCTCGTCGGCGATCTCTCGGATTTCTGTCCACCGTCTCCGCACTTGACCGAAAAGCTGGCTATCGAAGAAGATGTTGAGAATCCAGAAGACGTCGACAAGACTTCAGATGACAAATCATCATC</canonical_amplicon>
		<polymorphic_amplicon>TTCAGATCAGAAGAGTTTTGTGTTTCCGCCGGTAAGAGTTGATTGGGTCTAAAACGAAGGAAATTCTTTAGCTTTCCAGGAATACCCAATGTGCCGTCACTCGTCAGTCCCATCGATTGCTCATCTCGTCGGCGATCTCTCGGATTTCTGYCCACCGTCTCCGCACTTGACCGAAAAGCTGGCTATCGAAGAAGATGTTGAGAATCCAGAAGACGTCGACAAGACTTCAGATGACAAATCATCATC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39775</snp_id>
        <super_contig>c014301193.Contig1</super_contig>
        <contig_pos>46406</contig_pos>
        <strand>+</strand>
        <context>CCGACGTCAT[C/T]GTCTAATAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GACGTCGCTGTCGTTCCTGGAGCCACTGGGATTCAGAAGTCCGACGTCAT</left_flank>
        <right_flank>GTCTAATAATCTGTGTCATATATTTATATTCTCAATTTTTCAAATTTTTT</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCGCCAATAAAACCGAAATGCGAAGAATTCGACACTGCTGACGATGACGTGTTCGGAGGATCCGGTATGGATCCACAAAAGTCGGAGAATGTTGAAAAGATGGATGTGAAGCAGCAGCAGAAGATGTCCGACTTTGAGGACATCAATAACAGCCGTCTGCCGTCGAATTCGCATTCCGCAGCTCCGAGTTCAGATCAGAAGAGTTTTGTGTTTCCGCCGGTAAGAGTTGATTGGGTCTAAAACGAAGGAAATTCTTTAGCTTTCCAGGAATACCCAATGTGCCGTCACTCGTCAGTCCCATCGATTGCTCATCTCGTCGGCGATCTCTCGGATTTCTGTCCACCGTCTCCGCACTTGACCGAAAAGCTGGCTATCGAAGAAGATGTTGAGAATCCAGAAGACGTCGACAAGACTTCAGATGACAAATCATCATCTTCTAAGGCTGACGACGTCGCTGTCGTTCCTGGAGCCACTGGGATTCAGAAGTCCGACGTCATTGTCTAATAATCTGTGTCATATATTTATATTCTCAATTTTTCAAATTTTTTGCCACGTTGAGCACTTTCTTCCCGCCCCCAACCCCCTCTACACAGCATCTCTCCTGTCAAATATGTTTTATTGAATTCTTGCATTGTGTAAGTGTCCGTTTTTTTATCCCACGTTATCCTCATCTGTTTTGTGTGTCCTTTCCTGTTTTATTCGACTCCGCCCACTTTTGTGGCTCCGCCCCAGCACCCCAAAATCATTGTTTTATTGGTTTCCCCTAGACGATTTTTTAATTGTTTTTTAAAATACACTGTGCGAGTGAGCAAGAAATCCGGTGTGTGTGTGAAATGAAAAGTTGATATTCTAGTATTGATTTTTTGCAAAATTTTCTGAAAAAATGTCTAGCGCCGGACTTCAACCCGAATCCACGCAGTCTGAGGAGAACTAGGAGCCGAGAACGGGTATTTTAGCGGTGGAGCGTGTTTGAAACCTATGCTCTCTTGGTGAATAGA</canonical>
            <polymorphic>TCTCGCCAATAAAACCGAAATGCGAAGAATTCGACACTGCTGACGATGACGTGTTCGGAGGATCCGGTATGGATCCACAAAAGTCGGAGAATGTTGAAAAGATGGATGTGAAGCAGCAGCAGAAGATGTCCGACTTTGAGGACATCAATAACAGCCGTCTGCCGTCGAATTCGCATTCCGCAGCTCCGAGTTCAGATCAGAAGAGTTTTGTGTTTCCGCCGGTAAGAGTTGATTGGGTCTAAAACGAAGGAAATTCTTTAGCTTTCCAGGAATACCCAATGTGCCGTCACTCGTCAGTCCCATCGATTGCTCATCTCGTCGGCGATCTCTCGGATTTCTGTCCACCGTCTCCGCACTTGACCGAAAAGCTGGCTATCGAAGAAGATGTTGAGAATCCAGAAGACGTCGACAAGACTTCAGATGACAAATCATCATCTTCTAAGGCTGACGACGTCGCTGTCGTTCCTGGAGCCACTGGGATTCAGAAGTCCGACGTCATYGTCTAATAATCTGTGTCATATATTTATATTCTCAATTTTTCAAATTTTTTGCCACGTTGAGCACTTTCTTCCCGCCCCCAACCCCCTCTACACAGCATCTCTCCTGTCAAATATGTTTTATTGAATTCTTGCATTGTGTAAGTGTCCGTTTTTTTATCCCACGTTATCCTCATCTGTTTTGTGTGTCCTTTCCTGTTTTATTCGACTCCGCCCACTTTTGTGGCTCCGCCCCAGCACCCCAAAATCATTGTTTTATTGGTTTCCCCTAGACGATTTTTTAATTGTTTTTTAAAATACACTGTGCGAGTGAGCAAGAAATCCGGTGTGTGTGTGAAATGAAAAGTTGATATTCTAGTATTGATTTTTTGCAAAATTTTCTGAAAAAATGTCTAGCGCCGGACTTCAACCCGAATCCACGCAGTCTGAGGAGAACTAGGAGCCGAGAACGGGTATTTTAGCGGTGGAGCGTGTTTGAAACCTATGCTCTCTTGGTGAATAGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TATCGAAGAAGATGTTGAGAATC</pcr_primer_p1>
		<pcr_primer_p2>CAATAAAACATATTTGACAGGAGA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TATCGAAGAAGATGTTGAGAATCCAGAAGACGTCGACAAGACTTCAGATGACAAATCATCATCTTCTAAGGCTGACGACGTCGCTGTCGTTCCTGGAGCCACTGGGATTCAGAAGTCCGACGTCATTGTCTAATAATCTGTGTCATATATTTATATTCTCAATTTTTCAAATTTTTTGCCACGTTGAGCACTTTCTTCCCGCCCCCAACCCCCTCTACACAGCATCTCTCCTGTCAAATATGTTTTATTG</canonical_amplicon>
		<polymorphic_amplicon>TATCGAAGAAGATGTTGAGAATCCAGAAGACGTCGACAAGACTTCAGATGACAAATCATCATCTTCTAAGGCTGACGACGTCGCTGTCGTTCCTGGAGCCACTGGGATTCAGAAGTCCGACGTCATYGTCTAATAATCTGTGTCATATATTTATATTCTCAATTTTTCAAATTTTTTGCCACGTTGAGCACTTTCTTCCCGCCCCCAACCCCCTCTACACAGCATCTCTCCTGTCAAATATGTTTTATTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39776</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>56089</contig_pos>
        <strand></strand>
        <context>actttgagcc[T/C]atatatctcg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>TCGAGACGCTACCGTAAAACATGTGCCACCTACACCGCCGACTTTGAGCC</left_flank>
        <right_flank>ATATATCTCGGTTCCTGTACGACATATCAAAAAGTGATCAACTGATAAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCGTACTTGTAATATGAGGGATGAGAAAATAGAATAACTAAGAAGATGAGTTCTAATAGAAAGTTCTAGAAAGGTTCAAGGAATTGTTAATGAGGGATATGTTCAAAGTGTTAGAATGGATGGTAACTTTGATCCCATATATCTAAGTTCCTGTAAAAGATATCGAAAAATAGTCGACTGACAAAATGTTTATCAGAATATCACCAATATTTTATCAATTGACAAGTTTTTGATATCCCTTACAGAAATCGAGATAATTGAGATCAAAGTTAATGAGTTGGGAGGGCTTTTACATATCAGAGGAACGTTGATTCTTGGTTCATATACATATTGGTGTCCAAAAGAGCGTTCACTGGAATGTTATTAAAATTGACCCGTGCACTATTTGGTTATCAAAAATTGATATTGTGATAAATGTAGGCCGGATGTCGTGCCTCAGGCTTTTAACATCGAGACGCTACCGTAAAACATGTGCCACCTACACCGCCGACTTTGAGCCTATATATCTCGGTTCCTGTACGACATATCAAAAAGTGATCAACTGATAAAATCTTTGTGATATTATGATAAACATTTTGTCAGTTAACAACTTTTTGATATCTTTCACAGCAACCGAGATATATAGACTCAAAGTTTGATGGTCCCTGGCCACTAGCTTGTTACCTTGGTGCCAAAATTATGATTAGCTTTCCTTCAAATTGCCCTCAGAACTCGATCCACCTAGTCTCTGATCTTCCAATCTTCTAAACTTCACCTGTCGTCGACCTCTACTCGTACTCACAACAACATCTCCAAACTTTTCAGAAATTCTAAAAAATCCCATGAAAAATTCACAAATTCTCTCTTCTCTCTCATCCAACTAACTCCAAATTCAACCCGATCTCATCACCGCAGTGCCAATCTCTGGTGCCTTATATGGTTGGGACCCATCTCTTGATGATATCCTTTCTTCAATACAAATCCGTTTCTCTCCACGGTCGGTTAATCGAAAAAAAAAACG</canonical>
            <polymorphic>GCGTACTTGTAATATGAGGGATGAGAAAATAGAATAACTAAGAAGATGAGTTCTAATAGAAAGTTCTAGAAAGGTTCAAGGAATTGTTAATGAGGGATATGTTCAAAGTGTTAGAATGGATGGTAACTTTGATCCCATATATCTAAGTTCCTGTAAAAGATATCGAAAAATAGTCGACTGACAAAATGTTTATCAGAATATCACCAATATTTTATCAATTGACAAGTTTTTGATATCCCTTACAGAAATCGAGATAATTGAGATCAAAGTTAATGAGTTGGGAGGGCTTTTACATATCAGAGGAACGTTGATTCTTGGTTCATATACATATTGGTGTCCAAAAGAGCGTTCACTGGAATGTTATTAAAATTGACCCGTGCACTATTTGGTTATCAAAAATTGATATTGTGATAAATGTAGGCCGGATGTCGTGCCTCAGGCTTTTAACATCGAGACGCTACCGTAAAACATGTGCCACCTACACCGCCGACTTTGAGCCYATATATCTCGGTTCCTGTACGACATATCAAAAAGTGATCAACTGATAAAATCTTTGTGATATTATGATAAACATTTTGTCAGTTAACAACTTTTTGATATCTTTCACAGCAACCGAGATATATAGACTCAAAGTTTGATGGTCCCTGGCCACTAGCTTGTTACCTTGGTGCCAAAATTATGATTAGCTTTCCTTCAAATTGCCCTCAGAACTCGATCCACCTAGTCTCTGATCTTCCAATCTTCTAAACTTCACCTGTCGTCGACCTCTACTCGTACTCACAACAACATCTCCAAACTTTTCAGAAATTCTAAAAAATCCCATGAAAAATTCACAAATTCTCTCTTCTCTCTCATCCAACTAACTCCAAATTCAACCCGATCTCATCACCGCAGTGCCAATCTCTGGTGCCTTATATGGTTGGGACCCATCTCTTGATGATATCCTTTCTTCAATACAAATCCGTTTCTCTCCACGGTCGGTTAATCGAAAAAAAAAACG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAAATTGATATTGTGATAAATGTAGG</pcr_primer_p1>
		<pcr_primer_p2>ACCAAGGTAACAAGCTAGTGG</pcr_primer_p2>
		<pcr_amplicon_size>274</pcr_amplicon_size>
		<canonical_amplicon>AAAATTGATATTGTGATAAATGTAGGCCGGATGTCGTGCCTCAGGCTTTTAACATCGAGACGCTACCGTAAAACATGTGCCACCTACACCGCCGACTTTGAGCCTATATATCTCGGTTCCTGTACGACATATCAAAAAGTGATCAACTGATAAAATCTTTGTGATATTATGATAAACATTTTGTCAGTTAACAACTTTTTGATATCTTTCACAGCAACCGAGATATATAGACTCAAAGTTTGATGGTCCCTGGCCACTAGCTTGTTACCTTGGT</canonical_amplicon>
		<polymorphic_amplicon>AAAATTGATATTGTGATAAATGTAGGCCGGATGTCGTGCCTCAGGCTTTTAACATCGAGACGCTACCGTAAAACATGTGCCACCTACACCGCCGACTTTGAGCCYATATATCTCGGTTCCTGTACGACATATCAAAAAGTGATCAACTGATAAAATCTTTGTGATATTATGATAAACATTTTGTCAGTTAACAACTTTTTGATATCTTTCACAGCAACCGAGATATATAGACTCAAAGTTTGATGGTCCCTGGCCACTAGCTTGTTACCTTGGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39777</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>58337</contig_pos>
        <strand>+</strand>
        <context>TCCTTTTCTC[C/T]TTCAAGGGGT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGATTTAGTATATAAGTGCTCAGTGAGCTGCCTATTTTTGTCCTTTTCTC</left_flank>
        <right_flank>TTCAAGGGGTCCCAAAAGTATCTGTTTTCAAGTCATTGAAAAAAAGTGAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCCTGTAAAAGATATAAAAAAGTGGTTAACTGACAAAATGTTTGTGATATTGTGATAAACAATTTAGTAGTTAACACCTTTTTTATATCTTCTTCATGAACCGAGATATATGGGCTCCAAGTTGATGCTTCAGGCGGGTTTCTAATATAGCGCCCACTTCAATACGTGCTCTTTGAGCTCATATATCTTGACTCCTGTAAAAGATATCAAAAGTGTATAAACTGATAAAATGTAATTATAACTATGATCAATATTTTGTCAGTTGACCTCTTTTTGATATCTTTCACAGGAACCGAGGTATATGGGCTCAAAGTTTGGGTGGCACTCTATTAGTGTGCTACGAACATTTCTTTCCCATTCAACTAGTCTCGCTTTCTCTTTTCACACCCATTTTTCCAGTTCGTAAAGCAATCTAGACACTCGCGTCCCAATAGAAAAAAAGCTCTCCCGATTTAGTATATAAGTGCTCAGTGAGCTGCCTATTTTTGTCCTTTTCTCCTTCAAGGGGTCCCAAAAGTATCTGTTTTCAAGTCATTGAAAAAAAGTGATGAGGCGCGTGGATGATGTCATTATTTTTCGAAGATTTCGAATTCGAAGAAGTGGGGACTAAACCCAGCTATTAAGAATGAGTGGCTTTTCTTATGATGAATTTGAAAAACAACAAACAACTGCAAATTGATGGGTTGAACAAGTCTGGAGACGCTCTGAAAATAAGAGGAATCTGTAATTTGATATGTAGTTCTTGTAGTGTGTTGTCGCGAGTTGAAAGTGGACAACAACTGCGCGTGTTTTTGAGAATTTAGATTAGATTTATGGGCCAGATTTATAAAATCTGTTGTTATGATCTCAAGGGAACCTAACCTTTAACTTTGAGCCAATTTATCTCGATTCCTATGGTATATATGAAAAAGTAATCAACTGGTAAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACAGATTTTTCATATTTTGCTTAGGAGCCAAGATAAA</canonical>
            <polymorphic>TTCCTGTAAAAGATATAAAAAAGTGGTTAACTGACAAAATGTTTGTGATATTGTGATAAACAATTTAGTAGTTAACACCTTTTTTATATCTTCTTCATGAACCGAGATATATGGGCTCCAAGTTGATGCTTCAGGCGGGTTTCTAATATAGCGCCCACTTCAATACGTGCTCTTTGAGCTCATATATCTTGACTCCTGTAAAAGATATCAAAAGTGTATAAACTGATAAAATGTAATTATAACTATGATCAATATTTTGTCAGTTGACCTCTTTTTGATATCTTTCACAGGAACCGAGGTATATGGGCTCAAAGTTTGGGTGGCACTCTATTAGTGTGCTACGAACATTTCTTTCCCATTCAACTAGTCTCGCTTTCTCTTTTCACACCCATTTTTCCAGTTCGTAAAGCAATCTAGACACTCGCGTCCCAATAGAAAAAAAGCTCTCCCGATTTAGTATATAAGTGCTCAGTGAGCTGCCTATTTTTGTCCTTTTCTCYTTCAAGGGGTCCCAAAAGTATCTGTTTTCAAGTCATTGAAAAAAAGTGATGAGGCGCGTGGATGATGTCATTATTTTTCGAAGATTTCGAATTCGAAGAAGTGGGGACTAAACCCAGCTATTAAGAATGAGTGGCTTTTCTTATGATGAATTTGAAAAACAACAAACAACTGCAAATTGATGGGTTGAACAAGTCTGGAGACGCTCTGAAAATAAGAGGAATCTGTAATTTGATATGTAGTTCTTGTAGTGTGTTGTCGCGAGTTGAAAGTGGACAACAACTGCGCGTGTTTTTGAGAATTTAGATTAGATTTATGGGCCAGATTTATAAAATCTGTTGTTATGATCTCAAGGGAACCTAACCTTTAACTTTGAGCCAATTTATCTCGATTCCTATGGTATATATGAAAAAGTAATCAACTGGTAAATTGTTTATCATAATATCACAAACATTTTATCAGTTGACAGATTTTTCATATTTTGCTTAGGAGCCAAGATAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNNNNNNNGG</site>
                <isoschizomers>
                    <enzyme>Bsc4I</enzyme>
                    <enzyme>BseLI</enzyme>
                    <enzyme>BsiYI</enzyme>
                    <enzyme>BslI</enzyme>
                </isoschizomers>
                <canonical_bands>505 495</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AGTTCGTAAAGCAATCTAGACAC</pcr_primer_p1>
		<pcr_primer_p2>AAGAAAAGCCACTCATTCTTAAT</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>AGTTCGTAAAGCAATCTAGACACTCGCGTCCCAATAGAAAAAAAGCTCTCCCGATTTAGTATATAAGTGCTCAGTGAGCTGCCTATTTTTGTCCTTTTCTCCTTCAAGGGGTCCCAAAAGTATCTGTTTTCAAGTCATTGAAAAAAAGTGATGAGGCGCGTGGATGATGTCATTATTTTTCGAAGATTTCGAATTCGAAGAAGTGGGGACTAAACCCAGCTATTAAGAATGAGTGGCTTTTCTT</canonical_amplicon>
		<polymorphic_amplicon>AGTTCGTAAAGCAATCTAGACACTCGCGTCCCAATAGAAAAAAAGCTCTCCCGATTTAGTATATAAGTGCTCAGTGAGCTGCCTATTTTTGTCCTTTTCTCYTTCAAGGGGTCCCAAAAGTATCTGTTTTCAAGTCATTGAAAAAAAGTGATGAGGCGCGTGGATGATGTCATTATTTTTCGAAGATTTCGAATTCGAAGAAGTGGGGACTAAACCCAGCTATTAAGAATGAGTGGCTTTTCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39778</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>72476</contig_pos>
        <strand>+</strand>
        <context>TCTCCATCAT[G/T]CGCCTTTAAA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TCTCTGCTGCAATTACTATTTCTAAACGGTCGGGGCTCATTCTCCATCAT</left_flank>
        <right_flank>CGCCTTTAAAACGGCTATTGTTCTAAAGTTCGCGTTTTCCATCCATTACC</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCATACTGTCAAGTTTGAGCTCAATTATCTCGGTTCCTGGAAAAGGTACAAAAAAGTTGTCAACTGACAAAATGTAAATTATAGTATCAAAAATATTTCGTCAGTCGACTACTTTTTGATATCTCTCACAGGAAATGAGATACATAGGCTCAAAAATGACGATTTGTGGGACATTCTATAAGAGTGATTCTGGAGTAGGCACCCTAAGACGAGAATCCATTCAATAGAAAACTTTAGGTTTCAGTTCTAATTTTAAAGATGTTGCTTTTTTTCAGATCCTCTCCACTACCAAACCTCGACACTCCTCTCACCGAATCCAGTCATCAATCATCGGTTGTCAGCAAAGCGATCAACGAGGTAAGCGAGAGTAGTAGTAGTTAAAAATCTTGGCGTTTATTGCAAAAATCTCATTTTCTATCAATTAAATTTTATTGGTATAGAATCATTATTCTCTGCTGCAATTACTATTTCTAAACGGTCGGGGCTCATTCTCCATCATGCGCCTTTAAAACGGCTATTGTTCTAAAGTTCGCGTTTTCCATCCATTACCTGTTCCCCTGGGTAAATCATGGGAGAGAGAGAAGAATTTTTTTGGCCATAGATCATAACAATCGGGGGTGAAAAAGAAGGGAAAAATAACAATTTGACAGATGTGAGCGAGTTTTTTCTGGATGCCTAGGAAAGAAGAAAGGTTTATCTTTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTCAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTCGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAAGGGTTCGGTATTCTGAGCATCTCTTTTTCAGAATAGAACTCTAAATTTGAGCTAAACTTGTCAGAAATCTAGACAAAAAAAACTGGAACTGGCGTTCCAATTTTTCCTCTTGTTCTT</canonical>
            <polymorphic>CCATACTGTCAAGTTTGAGCTCAATTATCTCGGTTCCTGGAAAAGGTACAAAAAAGTTGTCAACTGACAAAATGTAAATTATAGTATCAAAAATATTTCGTCAGTCGACTACTTTTTGATATCTCTCACAGGAAATGAGATACATAGGCTCAAAAATGACGATTTGTGGGACATTCTATAAGAGTGATTCTGGAGTAGGCACCCTAAGACGAGAATCCATTCAATAGAAAACTTTAGGTTTCAGTTCTAATTTTAAAGATGTTGCTTTTTTTCAGATCCTCTCCACTACCAAACCTCGACACTCCTCTCACCGAATCCAGTCATCAATCATCGGTTGTCAGCAAAGCGATCAACGAGGTAAGCGAGAGTAGTAGTAGTTAAAAATCTTGGCGTTTATTGCAAAAATCTCATTTTCTATCAATTAAATTTTATTGGTATAGAATCATTATTCTCTGCTGCAATTACTATTTCTAAACGGTCGGGGCTCATTCTCCATCATKCGCCTTTAAAACGGCTATTGTTCTAAAGTTCGCGTTTTCCATCCATTACCTGTTCCCCTGGGTAAATCATGGGAGAGAGAGAAGAATTTTTTTGGCCATAGATCATAACAATCGGGGGTGAAAAAGAAGGGAAAAATAACAATTTGACAGATGTGAGCGAGTTTTTTCTGGATGCCTAGGAAAGAAGAAAGGTTTATCTTTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTCAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTCGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAAGGGTTCGGTATTCTGAGCATCTCTTTTTCAGAATAGAACTCTAAATTTGAGCTAAACTTGTCAGAAATCTAGACAAAAAAAACTGGAACTGGCGTTCCAATTTTTCCTCTTGTTCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GCGC</site>
                <isoschizomers>
                    <enzyme>AspLEI</enzyme>
                    <enzyme>BstHHI</enzyme>
                    <enzyme>CfoI</enzyme>
                    <enzyme>HhaI</enzyme>
                    <enzyme>Hin6I</enzyme>
                    <enzyme>HinP1I</enzyme>
                    <enzyme>HspAI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CATG</site>
                <isoschizomers>
                    <enzyme>CviAII</enzyme>
                    <enzyme>FatI</enzyme>
                    <enzyme>HpyCH4I</enzyme>
                    <enzyme>Hsp92II</enzyme>
                    <enzyme>NlaIII</enzyme>
                </isoschizomers>
                <canonical_bands>497 432 71</canonical_bands>
                <polymorphic_bands>568 432</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGCAAAAATCTCATTTTCTATC</pcr_primer_p1>
		<pcr_primer_p2>CAAATTGTTATTTTTCCCTTCTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGCAAAAATCTCATTTTCTATCAATTAAATTTTATTGGTATAGAATCATTATTCTCTGCTGCAATTACTATTTCTAAACGGTCGGGGCTCATTCTCCATCATGCGCCTTTAAAACGGCTATTGTTCTAAAGTTCGCGTTTTCCATCCATTACCTGTTCCCCTGGGTAAATCATGGGAGAGAGAGAAGAATTTTTTTGGCCATAGATCATAACAATCGGGGGTGAAAAAGAAGGGAAAAATAACAATTTG</canonical_amplicon>
		<polymorphic_amplicon>TTGCAAAAATCTCATTTTCTATCAATTAAATTTTATTGGTATAGAATCATTATTCTCTGCTGCAATTACTATTTCTAAACGGTCGGGGCTCATTCTCCATCATKCGCCTTTAAAACGGCTATTGTTCTAAAGTTCGCGTTTTCCATCCATTACCTGTTCCCCTGGGTAAATCATGGGAGAGAGAGAAGAATTTTTTTGGCCATAGATCATAACAATCGGGGGTGAAAAAGAAGGGAAAAATAACAATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39779</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>72715</contig_pos>
        <strand></strand>
        <context>ctccaactgt[C/T]aactttgaac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAGGTTTATCTTTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGT</left_flank>
        <right_flank>AACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTCAGTTCTAATTTTAAAGATGTTGCTTTTTTTCAGATCCTCTCCACTACCAAACCTCGACACTCCTCTCACCGAATCCAGTCATCAATCATCGGTTGTCAGCAAAGCGATCAACGAGGTAAGCGAGAGTAGTAGTAGTTAAAAATCTTGGCGTTTATTGCAAAAATCTCATTTTCTATCAATTAAATTTTATTGGTATAGAATCATTATTCTCTGCTGCAATTACTATTTCTAAACGGTCGGGGCTCATTCTCCATCATGCGCCTTTAAAACGGCTATTGTTCTAAAGTTCGCGTTTTCCATCCATTACCTGTTCCCCTGGGTAAATCATGGGAGAGAGAGAAGAATTTTTTTGGCCATAGATCATAACAATCGGGGGTGAAAAAGAAGGGAAAAATAACAATTTGACAGATGTGAGCGAGTTTTTTCTGGATGCCTAGGAAAGAAGAAAGGTTTATCTTTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTCAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTCGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAAGGGTTCGGTATTCTGAGCATCTCTTTTTCAGAATAGAACTCTAAATTTGAGCTAAACTTGTCAGAAATCTAGACAAAAAAAACTGGAACTGGCGTTCCAATTTTTCCTCTTGTTCTTCTTTTTTCCCCTCTCCTTAAACTTCCTAAATCATCAAAGAACGCCTTCTTTTCAGTCAAGTCTTCTTATAAGCCTCTGAATTTTTTCCAACCAAAACACCCGATTCATCAGTTTGACTTTCAAAAAAAAAGCAAGTTGGAGGGCATACCAGAAGAAATGAACACAACTTTTTTTTGCGTTTGCTTCTTCTATTTTTTTTCTATTTCTAGAAAAAAACATATATTATTTTCATAATCCTT</canonical>
            <polymorphic>TTCAGTTCTAATTTTAAAGATGTTGCTTTTTTTCAGATCCTCTCCACTACCAAACCTCGACACTCCTCTCACCGAATCCAGTCATCAATCATCGGTTGTCAGCAAAGCGATCAACGAGGTAAGCGAGAGTAGTAGTAGTTAAAAATCTTGGCGTTTATTGCAAAAATCTCATTTTCTATCAATTAAATTTTATTGGTATAGAATCATTATTCTCTGCTGCAATTACTATTTCTAAACGGTCGGGGCTCATTCTCCATCATGCGCCTTTAAAACGGCTATTGTTCTAAAGTTCGCGTTTTCCATCCATTACCTGTTCCCCTGGGTAAATCATGGGAGAGAGAGAAGAATTTTTTTGGCCATAGATCATAACAATCGGGGGTGAAAAAGAAGGGAAAAATAACAATTTGACAGATGTGAGCGAGTTTTTTCTGGATGCCTAGGAAAGAAGAAAGGTTTATCTTTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTYAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTCGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAAGGGTTCGGTATTCTGAGCATCTCTTTTTCAGAATAGAACTCTAAATTTGAGCTAAACTTGTCAGAAATCTAGACAAAAAAAACTGGAACTGGCGTTCCAATTTTTCCTCTTGTTCTTCTTTTTTCCCCTCTCCTTAAACTTCCTAAATCATCAAAGAACGCCTTCTTTTCAGTCAAGTCTTCTTATAAGCCTCTGAATTTTTTCCAACCAAAACACCCGATTCATCAGTTTGACTTTCAAAAAAAAAGCAAGTTGGAGGGCATACCAGAAGAAATGAACACAACTTTTTTTTGCGTTTGCTTCTTCTATTTTTTTTCTATTTCTAGAAAAAAACATATATTATTTTCATAATCCTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GTYRAC</site>
                <isoschizomers>
                    <enzyme>HincII</enzyme>
                    <enzyme>HindII</enzyme>
                </isoschizomers>
                <canonical_bands>500 404 51 45</canonical_bands>
                <polymorphic_bands>551 404 45</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTAGGAAAGAAGAAAGGTTTATC</pcr_primer_p1>
		<pcr_primer_p2>CTGAAAAAGAGATGCTCAGAATA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CCTAGGAAAGAAGAAAGGTTTATCTTTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTCAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTCGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAAGGGTTCGGTATTCTGAGCATCTCTTTTTCAG</canonical_amplicon>
		<polymorphic_amplicon>CCTAGGAAAGAAGAAAGGTTTATCTTTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTYAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTCGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAAGGGTTCGGTATTCTGAGCATCTCTTTTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39780</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>72804</contig_pos>
        <strand></strand>
        <context>agaattattt[C/T]gttagttgac</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTT</left_flank>
        <right_flank>GTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATCGGTTGTCAGCAAAGCGATCAACGAGGTAAGCGAGAGTAGTAGTAGTTAAAAATCTTGGCGTTTATTGCAAAAATCTCATTTTCTATCAATTAAATTTTATTGGTATAGAATCATTATTCTCTGCTGCAATTACTATTTCTAAACGGTCGGGGCTCATTCTCCATCATGCGCCTTTAAAACGGCTATTGTTCTAAAGTTCGCGTTTTCCATCCATTACCTGTTCCCCTGGGTAAATCATGGGAGAGAGAGAAGAATTTTTTTGGCCATAGATCATAACAATCGGGGGTGAAAAAGAAGGGAAAAATAACAATTTGACAGATGTGAGCGAGTTTTTTCTGGATGCCTAGGAAAGAAGAAAGGTTTATCTTTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTCAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTCGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAAGGGTTCGGTATTCTGAGCATCTCTTTTTCAGAATAGAACTCTAAATTTGAGCTAAACTTGTCAGAAATCTAGACAAAAAAAACTGGAACTGGCGTTCCAATTTTTCCTCTTGTTCTTCTTTTTTCCCCTCTCCTTAAACTTCCTAAATCATCAAAGAACGCCTTCTTTTCAGTCAAGTCTTCTTATAAGCCTCTGAATTTTTTCCAACCAAAACACCCGATTCATCAGTTTGACTTTCAAAAAAAAAGCAAGTTGGAGGGCATACCAGAAGAAATGAACACAACTTTTTTTTGCGTTTGCTTCTTCTATTTTTTTTCTATTTCTAGAAAAAAACATATATTATTTTCATAATCCTTTGCTTTTTTGTTTTTACATGTACCGTAAACACTCTTTTAGAAGGCTACATACATCGTCAACTTTGAGCCAACATATCTCACTTCTTATA</canonical>
            <polymorphic>CATCGGTTGTCAGCAAAGCGATCAACGAGGTAAGCGAGAGTAGTAGTAGTTAAAAATCTTGGCGTTTATTGCAAAAATCTCATTTTCTATCAATTAAATTTTATTGGTATAGAATCATTATTCTCTGCTGCAATTACTATTTCTAAACGGTCGGGGCTCATTCTCCATCATGCGCCTTTAAAACGGCTATTGTTCTAAAGTTCGCGTTTTCCATCCATTACCTGTTCCCCTGGGTAAATCATGGGAGAGAGAGAAGAATTTTTTTGGCCATAGATCATAACAATCGGGGGTGAAAAAGAAGGGAAAAATAACAATTTGACAGATGTGAGCGAGTTTTTTCTGGATGCCTAGGAAAGAAGAAAGGTTTATCTTTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTCAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTYGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAAGGGTTCGGTATTCTGAGCATCTCTTTTTCAGAATAGAACTCTAAATTTGAGCTAAACTTGTCAGAAATCTAGACAAAAAAAACTGGAACTGGCGTTCCAATTTTTCCTCTTGTTCTTCTTTTTTCCCCTCTCCTTAAACTTCCTAAATCATCAAAGAACGCCTTCTTTTCAGTCAAGTCTTCTTATAAGCCTCTGAATTTTTTCCAACCAAAACACCCGATTCATCAGTTTGACTTTCAAAAAAAAAGCAAGTTGGAGGGCATACCAGAAGAAATGAACACAACTTTTTTTTGCGTTTGCTTCTTCTATTTTTTTTCTATTTCTAGAAAAAAACATATATTATTTTCATAATCCTTTGCTTTTTTGTTTTTACATGTACCGTAAACACTCTTTTAGAAGGCTACATACATCGTCAACTTTGAGCCAACATATCTCACTTCTTATA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GAANNNNTTC</site>
                <isoschizomers>
                    <enzyme>Asp700I</enzyme>
                    <enzyme>MroXI</enzyme>
                    <enzyme>PdmI</enzyme>
                    <enzyme>XmnI</enzyme>
                </isoschizomers>
                <canonical_bands>495 246 159 61 39</canonical_bands>
                <polymorphic_bands>556 246 159 39</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CCTAGGAAAGAAGAAAGGTTTATC</pcr_primer_p1>
		<pcr_primer_p2>CTGAAAAAGAGATGCTCAGAATA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>CCTAGGAAAGAAGAAAGGTTTATCTTTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTCAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTCGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAAGGGTTCGGTATTCTGAGCATCTCTTTTTCAG</canonical_amplicon>
		<polymorphic_amplicon>CCTAGGAAAGAAGAAAGGTTTATCTTTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTCAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTYGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAAGGGTTCGGTATTCTGAGCATCTCTTTTTCAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39781</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>72860</contig_pos>
        <strand></strand>
        <context>ttggctgaaa[G/A]RGTTCGGTAT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAA</left_flank>
        <right_flank>GGTTCGGTATTCTGAGCATCTCTTTTTCAGAATAGAACTCTAAATTTGAG</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTGGCGTTTATTGCAAAAATCTCATTTTCTATCAATTAAATTTTATTGGTATAGAATCATTATTCTCTGCTGCAATTACTATTTCTAAACGGTCGGGGCTCATTCTCCATCATGCGCCTTTAAAACGGCTATTGTTCTAAAGTTCGCGTTTTCCATCCATTACCTGTTCCCCTGGGTAAATCATGGGAGAGAGAGAAGAATTTTTTTGGCCATAGATCATAACAATCGGGGGTGAAAAAGAAGGGAAAAATAACAATTTGACAGATGTGAGCGAGTTTTTTCTGGATGCCTAGGAAAGAAGAAAGGTTTATCTTTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTCAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTCGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAAGGGTTCGGTATTCTGAGCATCTCTTTTTCAGAATAGAACTCTAAATTTGAGCTAAACTTGTCAGAAATCTAGACAAAAAAAACTGGAACTGGCGTTCCAATTTTTCCTCTTGTTCTTCTTTTTTCCCCTCTCCTTAAACTTCCTAAATCATCAAAGAACGCCTTCTTTTCAGTCAAGTCTTCTTATAAGCCTCTGAATTTTTTCCAACCAAAACACCCGATTCATCAGTTTGACTTTCAAAAAAAAAGCAAGTTGGAGGGCATACCAGAAGAAATGAACACAACTTTTTTTTGCGTTTGCTTCTTCTATTTTTTTTCTATTTCTAGAAAAAAACATATATTATTTTCATAATCCTTTGCTTTTTTGTTTTTACATGTACCGTAAACACTCTTTTAGAAGGCTACATACATCGTCAACTTTGAGCCAACATATCTCACTTCTTATAATAGATATCAAAAAGTAAGTAACAAATAAAATGTAGCCGATATCATGATAAACATT</canonical>
            <polymorphic>TCTTGGCGTTTATTGCAAAAATCTCATTTTCTATCAATTAAATTTTATTGGTATAGAATCATTATTCTCTGCTGCAATTACTATTTCTAAACGGTCGGGGCTCATTCTCCATCATGCGCCTTTAAAACGGCTATTGTTCTAAAGTTCGCGTTTTCCATCCATTACCTGTTCCCCTGGGTAAATCATGGGAGAGAGAGAAGAATTTTTTTGGCCATAGATCATAACAATCGGGGGTGAAAAAGAAGGGAAAAATAACAATTTGACAGATGTGAGCGAGTTTTTTCTGGATGCCTAGGAAAGAAGAAAGGTTTATCTTTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTCAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTCGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAARGGTTCGGTATTCTGAGCATCTCTTTTTCAGAATAGAACTCTAAATTTGAGCTAAACTTGTCAGAAATCTAGACAAAAAAAACTGGAACTGGCGTTCCAATTTTTCCTCTTGTTCTTCTTTTTTCCCCTCTCCTTAAACTTCCTAAATCATCAAAGAACGCCTTCTTTTCAGTCAAGTCTTCTTATAAGCCTCTGAATTTTTTCCAACCAAAACACCCGATTCATCAGTTTGACTTTCAAAAAAAAAGCAAGTTGGAGGGCATACCAGAAGAAATGAACACAACTTTTTTTTGCGTTTGCTTCTTCTATTTTTTTTCTATTTCTAGAAAAAAACATATATTATTTTCATAATCCTTTGCTTTTTTGTTTTTACATGTACCGTAAACACTCTTTTAGAAGGCTACATACATCGTCAACTTTGAGCCAACATATCTCACTTCTTATAATAGATATCAAAAAGTAAGTAACAAATAAAATGTAGCCGATATCATGATAAACATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGGGTCTAATGGAATG</pcr_primer_p1>
		<pcr_primer_p2>TCTAGATTTCTGACAAGTTTAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTCAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTCGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAAGGGTTCGGTATTCTGAGCATCTCTTTTTCAGAATAGAACTCTAAATTTGAGCTAAACTTGTCAGAAATCTAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTCAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTCGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAARGGTTCGGTATTCTGAGCATCTCTTTTTCAGAATAGAACTCTAAATTTGAGCTAAACTTGTCAGAAATCTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39782</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>72861</contig_pos>
        <strand>+</strand>
        <context>tggctgaaar[A/G]GTTCGGTATT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAAG</left_flank>
        <right_flank>GTTCGGTATTCTGAGCATCTCTTTTTCAGAATAGAACTCTAAATTTGAGC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGGCGTTTATTGCAAAAATCTCATTTTCTATCAATTAAATTTTATTGGTATAGAATCATTATTCTCTGCTGCAATTACTATTTCTAAACGGTCGGGGCTCATTCTCCATCATGCGCCTTTAAAACGGCTATTGTTCTAAAGTTCGCGTTTTCCATCCATTACCTGTTCCCCTGGGTAAATCATGGGAGAGAGAGAAGAATTTTTTTGGCCATAGATCATAACAATCGGGGGTGAAAAAGAAGGGAAAAATAACAATTTGACAGATGTGAGCGAGTTTTTTCTGGATGCCTAGGAAAGAAGAAAGGTTTATCTTTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTCAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTCGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAAGGGTTCGGTATTCTGAGCATCTCTTTTTCAGAATAGAACTCTAAATTTGAGCTAAACTTGTCAGAAATCTAGACAAAAAAAACTGGAACTGGCGTTCCAATTTTTCCTCTTGTTCTTCTTTTTTCCCCTCTCCTTAAACTTCCTAAATCATCAAAGAACGCCTTCTTTTCAGTCAAGTCTTCTTATAAGCCTCTGAATTTTTTCCAACCAAAACACCCGATTCATCAGTTTGACTTTCAAAAAAAAAGCAAGTTGGAGGGCATACCAGAAGAAATGAACACAACTTTTTTTTGCGTTTGCTTCTTCTATTTTTTTTCTATTTCTAGAAAAAAACATATATTATTTTCATAATCCTTTGCTTTTTTGTTTTTACATGTACCGTAAACACTCTTTTAGAAGGCTACATACATCGTCAACTTTGAGCCAACATATCTCACTTCTTATAATAGATATCAAAAAGTAAGTAACAAATAAAATGTAGCCGATATCATGATAAACATTT</canonical>
            <polymorphic>CTTGGCGTTTATTGCAAAAATCTCATTTTCTATCAATTAAATTTTATTGGTATAGAATCATTATTCTCTGCTGCAATTACTATTTCTAAACGGTCGGGGCTCATTCTCCATCATGCGCCTTTAAAACGGCTATTGTTCTAAAGTTCGCGTTTTCCATCCATTACCTGTTCCCCTGGGTAAATCATGGGAGAGAGAGAAGAATTTTTTTGGCCATAGATCATAACAATCGGGGGTGAAAAAGAAGGGAAAAATAACAATTTGACAGATGTGAGCGAGTTTTTTCTGGATGCCTAGGAAAGAAGAAAGGTTTATCTTTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTCAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTCGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAAGRGTTCGGTATTCTGAGCATCTCTTTTTCAGAATAGAACTCTAAATTTGAGCTAAACTTGTCAGAAATCTAGACAAAAAAAACTGGAACTGGCGTTCCAATTTTTCCTCTTGTTCTTCTTTTTTCCCCTCTCCTTAAACTTCCTAAATCATCAAAGAACGCCTTCTTTTCAGTCAAGTCTTCTTATAAGCCTCTGAATTTTTTCCAACCAAAACACCCGATTCATCAGTTTGACTTTCAAAAAAAAAGCAAGTTGGAGGGCATACCAGAAGAAATGAACACAACTTTTTTTTGCGTTTGCTTCTTCTATTTTTTTTCTATTTCTAGAAAAAAACATATATTATTTTCATAATCCTTTGCTTTTTTGTTTTTACATGTACCGTAAACACTCTTTTAGAAGGCTACATACATCGTCAACTTTGAGCCAACATATCTCACTTCTTATAATAGATATCAAAAAGTAAGTAACAAATAAAATGTAGCCGATATCATGATAAACATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTTGGGTCTAATGGAATG</pcr_primer_p1>
		<pcr_primer_p2>TCTAGATTTCTGACAAGTTTAGCTC</pcr_primer_p2>
		<pcr_amplicon_size>257</pcr_amplicon_size>
		<canonical_amplicon>TTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTCAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTCGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAAGGGTTCGGTATTCTGAGCATCTCTTTTTCAGAATAGAACTCTAAATTTGAGCTAAACTTGTCAGAAATCTAGA</canonical_amplicon>
		<polymorphic_amplicon>TTTTTGGGTCTAATGGAATGCCCCCCTCCCTCCAACTGTCAACTTTGAACCCGTGTATCTCCATTTCTGTGAAAGATATCAAAAAGTTGTCAACTGATAAATTATTTATCATAATATCAGAATTATTTCGTTAGTTGACAACTTTTTGATATATTTCTCAGGAACCGAGATAACTTGGCTGAAAGRGTTCGGTATTCTGAGCATCTCTTTTTCAGAATAGAACTCTAAATTTGAGCTAAACTTGTCAGAAATCTAGA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39783</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>146128</contig_pos>
        <strand></strand>
        <context>aatactcttt[G/C]aactgtttag</context>
        <canonical_base>G</canonical_base>
        <alleles>G/C</alleles>
        <left_flank>GAAAAGTGTCAACTACAAAAATGAAGCTCTATTTTTGTTTAATACTCTTT</left_flank>
        <right_flank>AACTGTTTAGGCAAACTCAAAAAGTTTGAGGTTATTTTTAGGATTTTGAA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTCGCTAGTTGTATTTCTTCAGAAGAGGGCGATTCCAGCAGCCCCGAGTAAGACCATACACGTACGTCAGGCTCCGCCCAACCGTTTTTTTTCTATGAGACTGCCGGGAGACATTCGAGACGCATACATCAAGATGTGGTAAGAAGATTGTGATAAGTTCGAGAAGATTCTCTCGTTAAAGGAGAGTGGACACCGATAAAAAACGATTCGGTTCTTTCAAACAGTAGAAGGATGACAACATTTGTTGACGCCAGAACACTAGGAATTTGTCAGGGCCACAGTTTGTTACTGTGATTTGATGATAGTTAAAGAAAGAGATAATATGCACAGCGAATACATCCGTAGACATCAAAGATGATGGATTTTGTGGTTTGTTACTAGGTACAATGGGGTTATCTAGGTTGCTCATCTTCCACGGGGCATATCTCGCTTCGTTGAATTTCTATCTGAAAAGTGTCAACTACAAAAATGAAGCTCTATTTTTGTTTAATACTCTTTGAACTGTTTAGGCAAACTCAAAAAGTTTGAGGTTATTTTTAGGATTTTGAAAATGTAAAGTTTGCTGTTAACTGATGGAACGAGTTCCACACCTTCAACTTTGATCCCTTATATCTTATTTTCTGTAAAAGATAGAAAAAAGTTGTCAACTGATAAATTGTTTATTATAACATCAGAAGTGCTTTGTCAGTTTACAATTTTCTGATATCTCTGACATGAACTGAGATGAACTAGCTGAAAGTTAAAAGTTAGGTTTACGGTAGTATCCTTCCATATTCCTGCAAACTGAATGCAATTTTTTGTATGTATTTAATTGTTATTCCGATTTTTGACATATTCAATTCAAGTACTTTTCTAAAACGTTCGTGATGTTTCCACCAATTCTTTGACCCTGAAAAGGCAGCCAATGGCTAATTGTTTTCTAATAGCCCATGTAATTTTTCCAACAACACTCTCTCTCTCGTGATTTTAGTTCTTCAGGTCATCCGAATAGCCACTTTA</canonical>
            <polymorphic>TCTCGCTAGTTGTATTTCTTCAGAAGAGGGCGATTCCAGCAGCCCCGAGTAAGACCATACACGTACGTCAGGCTCCGCCCAACCGTTTTTTTTCTATGAGACTGCCGGGAGACATTCGAGACGCATACATCAAGATGTGGTAAGAAGATTGTGATAAGTTCGAGAAGATTCTCTCGTTAAAGGAGAGTGGACACCGATAAAAAACGATTCGGTTCTTTCAAACAGTAGAAGGATGACAACATTTGTTGACGCCAGAACACTAGGAATTTGTCAGGGCCACAGTTTGTTACTGTGATTTGATGATAGTTAAAGAAAGAGATAATATGCACAGCGAATACATCCGTAGACATCAAAGATGATGGATTTTGTGGTTTGTTACTAGGTACAATGGGGTTATCTAGGTTGCTCATCTTCCACGGGGCATATCTCGCTTCGTTGAATTTCTATCTGAAAAGTGTCAACTACAAAAATGAAGCTCTATTTTTGTTTAATACTCTTTSAACTGTTTAGGCAAACTCAAAAAGTTTGAGGTTATTTTTAGGATTTTGAAAATGTAAAGTTTGCTGTTAACTGATGGAACGAGTTCCACACCTTCAACTTTGATCCCTTATATCTTATTTTCTGTAAAAGATAGAAAAAAGTTGTCAACTGATAAATTGTTTATTATAACATCAGAAGTGCTTTGTCAGTTTACAATTTTCTGATATCTCTGACATGAACTGAGATGAACTAGCTGAAAGTTAAAAGTTAGGTTTACGGTAGTATCCTTCCATATTCCTGCAAACTGAATGCAATTTTTTGTATGTATTTAATTGTTATTCCGATTTTTGACATATTCAATTCAAGTACTTTTCTAAAACGTTCGTGATGTTTCCACCAATTCTTTGACCCTGAAAAGGCAGCCAATGGCTAATTGTTTTCTAATAGCCCATGTAATTTTTCCAACAACACTCTCTCTCTCGTGATTTTAGTTCTTCAGGTCATCCGAATAGCCACTTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAATATGCACAGCGAATACATC</pcr_primer_p1>
		<pcr_primer_p2>AACAGCAAACTTTACATTTTCAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ATAATATGCACAGCGAATACATCCGTAGACATCAAAGATGATGGATTTTGTGGTTTGTTACTAGGTACAATGGGGTTATCTAGGTTGCTCATCTTCCACGGGGCATATCTCGCTTCGTTGAATTTCTATCTGAAAAGTGTCAACTACAAAAATGAAGCTCTATTTTTGTTTAATACTCTTTGAACTGTTTAGGCAAACTCAAAAAGTTTGAGGTTATTTTTAGGATTTTGAAAATGTAAAGTTTGCTGTT</canonical_amplicon>
		<polymorphic_amplicon>ATAATATGCACAGCGAATACATCCGTAGACATCAAAGATGATGGATTTTGTGGTTTGTTACTAGGTACAATGGGGTTATCTAGGTTGCTCATCTTCCACGGGGCATATCTCGCTTCGTTGAATTTCTATCTGAAAAGTGTCAACTACAAAAATGAAGCTCTATTTTTGTTTAATACTCTTTSAACTGTTTAGGCAAACTCAAAAAGTTTGAGGTTATTTTTAGGATTTTGAAAATGTAAAGTTTGCTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39784</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>146209</contig_pos>
        <strand></strand>
        <context>CTGatggaac[G/T]agttccamac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTTATTTTTAGGATTTTGAAAATGTAAAGTTTGCTGTTAACTGATGGAAC</left_flank>
        <right_flank>AGTTCCACACCTTCAACTTTGATCCCTTATATCTTATTTTCTGTAAAAGA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACCGTTTTTTTTCTATGAGACTGCCGGGAGACATTCGAGACGCATACATCAAGATGTGGTAAGAAGATTGTGATAAGTTCGAGAAGATTCTCTCGTTAAAGGAGAGTGGACACCGATAAAAAACGATTCGGTTCTTTCAAACAGTAGAAGGATGACAACATTTGTTGACGCCAGAACACTAGGAATTTGTCAGGGCCACAGTTTGTTACTGTGATTTGATGATAGTTAAAGAAAGAGATAATATGCACAGCGAATACATCCGTAGACATCAAAGATGATGGATTTTGTGGTTTGTTACTAGGTACAATGGGGTTATCTAGGTTGCTCATCTTCCACGGGGCATATCTCGCTTCGTTGAATTTCTATCTGAAAAGTGTCAACTACAAAAATGAAGCTCTATTTTTGTTTAATACTCTTTGAACTGTTTAGGCAAACTCAAAAAGTTTGAGGTTATTTTTAGGATTTTGAAAATGTAAAGTTTGCTGTTAACTGATGGAACGAGTTCCACACCTTCAACTTTGATCCCTTATATCTTATTTTCTGTAAAAGATAGAAAAAAGTTGTCAACTGATAAATTGTTTATTATAACATCAGAAGTGCTTTGTCAGTTTACAATTTTCTGATATCTCTGACATGAACTGAGATGAACTAGCTGAAAGTTAAAAGTTAGGTTTACGGTAGTATCCTTCCATATTCCTGCAAACTGAATGCAATTTTTTGTATGTATTTAATTGTTATTCCGATTTTTGACATATTCAATTCAAGTACTTTTCTAAAACGTTCGTGATGTTTCCACCAATTCTTTGACCCTGAAAAGGCAGCCAATGGCTAATTGTTTTCTAATAGCCCATGTAATTTTTCCAACAACACTCTCTCTCTCGTGATTTTAGTTCTTCAGGTCATCCGAATAGCCACTTTAATTTGCTATCTTACACCCAAATGACGTTTAAAACAGTTTGCCGAAGTCGAGAATGACTTTAGATCAGATCAATCATCGCTT</canonical>
            <polymorphic>ACCGTTTTTTTTCTATGAGACTGCCGGGAGACATTCGAGACGCATACATCAAGATGTGGTAAGAAGATTGTGATAAGTTCGAGAAGATTCTCTCGTTAAAGGAGAGTGGACACCGATAAAAAACGATTCGGTTCTTTCAAACAGTAGAAGGATGACAACATTTGTTGACGCCAGAACACTAGGAATTTGTCAGGGCCACAGTTTGTTACTGTGATTTGATGATAGTTAAAGAAAGAGATAATATGCACAGCGAATACATCCGTAGACATCAAAGATGATGGATTTTGTGGTTTGTTACTAGGTACAATGGGGTTATCTAGGTTGCTCATCTTCCACGGGGCATATCTCGCTTCGTTGAATTTCTATCTGAAAAGTGTCAACTACAAAAATGAAGCTCTATTTTTGTTTAATACTCTTTGAACTGTTTAGGCAAACTCAAAAAGTTTGAGGTTATTTTTAGGATTTTGAAAATGTAAAGTTTGCTGTTAACTGATGGAACKAGTTCCACACCTTCAACTTTGATCCCTTATATCTTATTTTCTGTAAAAGATAGAAAAAAGTTGTCAACTGATAAATTGTTTATTATAACATCAGAAGTGCTTTGTCAGTTTACAATTTTCTGATATCTCTGACATGAACTGAGATGAACTAGCTGAAAGTTAAAAGTTAGGTTTACGGTAGTATCCTTCCATATTCCTGCAAACTGAATGCAATTTTTTGTATGTATTTAATTGTTATTCCGATTTTTGACATATTCAATTCAAGTACTTTTCTAAAACGTTCGTGATGTTTCCACCAATTCTTTGACCCTGAAAAGGCAGCCAATGGCTAATTGTTTTCTAATAGCCCATGTAATTTTTCCAACAACACTCTCTCTCTCGTGATTTTAGTTCTTCAGGTCATCCGAATAGCCACTTTAATTTGCTATCTTACACCCAAATGACGTTTAAAACAGTTTGCCGAAGTCGAGAATGACTTTAGATCAGATCAATCATCGCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTACAATGGGGTTATCTAGG</pcr_primer_p1>
		<pcr_primer_p2>GCAGGAATATGGAAGGATACTA</pcr_primer_p2>
		<pcr_amplicon_size>400</pcr_amplicon_size>
		<canonical_amplicon>GGTACAATGGGGTTATCTAGGTTGCTCATCTTCCACGGGGCATATCTCGCTTCGTTGAATTTCTATCTGAAAAGTGTCAACTACAAAAATGAAGCTCTATTTTTGTTTAATACTCTTTGAACTGTTTAGGCAAACTCAAAAAGTTTGAGGTTATTTTTAGGATTTTGAAAATGTAAAGTTTGCTGTTAACTGATGGAACGAGTTCCACACCTTCAACTTTGATCCCTTATATCTTATTTTCTGTAAAAGATAGAAAAAAGTTGTCAACTGATAAATTGTTTATTATAACATCAGAAGTGCTTTGTCAGTTTACAATTTTCTGATATCTCTGACATGAACTGAGATGAACTAGCTGAAAGTTAAAAGTTAGGTTTACGGTAGTATCCTTCCATATTCCTGC</canonical_amplicon>
		<polymorphic_amplicon>GGTACAATGGGGTTATCTAGGTTGCTCATCTTCCACGGGGCATATCTCGCTTCGTTGAATTTCTATCTGAAAAGTGTCAACTACAAAAATGAAGCTCTATTTTTGTTTAATACTCTTTGAACTGTTTAGGCAAACTCAAAAAGTTTGAGGTTATTTTTAGGATTTTGAAAATGTAAAGTTTGCTGTTAACTGATGGAACKAGTTCCACACCTTCAACTTTGATCCCTTATATCTTATTTTCTGTAAAAGATAGAAAAAAGTTGTCAACTGATAAATTGTTTATTATAACATCAGAAGTGCTTTGTCAGTTTACAATTTTCTGATATCTCTGACATGAACTGAGATGAACTAGCTGAAAGTTAAAAGTTAGGTTTACGGTAGTATCCTTCCATATTCCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39785</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>146217</contig_pos>
        <strand></strand>
        <context>ackagttcca[C/A]accttcaact</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TAGGATTTTGAAAATGTAAAGTTTGCTGTTAACTGATGGAACGAGTTCCA</left_flank>
        <right_flank>ACCTTCAACTTTGATCCCTTATATCTTATTTTCTGTAAAAGATAGAAAAA</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTCTATGAGACTGCCGGGAGACATTCGAGACGCATACATCAAGATGTGGTAAGAAGATTGTGATAAGTTCGAGAAGATTCTCTCGTTAAAGGAGAGTGGACACCGATAAAAAACGATTCGGTTCTTTCAAACAGTAGAAGGATGACAACATTTGTTGACGCCAGAACACTAGGAATTTGTCAGGGCCACAGTTTGTTACTGTGATTTGATGATAGTTAAAGAAAGAGATAATATGCACAGCGAATACATCCGTAGACATCAAAGATGATGGATTTTGTGGTTTGTTACTAGGTACAATGGGGTTATCTAGGTTGCTCATCTTCCACGGGGCATATCTCGCTTCGTTGAATTTCTATCTGAAAAGTGTCAACTACAAAAATGAAGCTCTATTTTTGTTTAATACTCTTTGAACTGTTTAGGCAAACTCAAAAAGTTTGAGGTTATTTTTAGGATTTTGAAAATGTAAAGTTTGCTGTTAACTGATGGAACGAGTTCCACACCTTCAACTTTGATCCCTTATATCTTATTTTCTGTAAAAGATAGAAAAAAGTTGTCAACTGATAAATTGTTTATTATAACATCAGAAGTGCTTTGTCAGTTTACAATTTTCTGATATCTCTGACATGAACTGAGATGAACTAGCTGAAAGTTAAAAGTTAGGTTTACGGTAGTATCCTTCCATATTCCTGCAAACTGAATGCAATTTTTTGTATGTATTTAATTGTTATTCCGATTTTTGACATATTCAATTCAAGTACTTTTCTAAAACGTTCGTGATGTTTCCACCAATTCTTTGACCCTGAAAAGGCAGCCAATGGCTAATTGTTTTCTAATAGCCCATGTAATTTTTCCAACAACACTCTCTCTCTCGTGATTTTAGTTCTTCAGGTCATCCGAATAGCCACTTTAATTTGCTATCTTACACCCAAATGACGTTTAAAACAGTTTGCCGAAGTCGAGAATGACTTTAGATCAGATCAATCATCGCTTTCGGTTCT</canonical>
            <polymorphic>TTTTCTATGAGACTGCCGGGAGACATTCGAGACGCATACATCAAGATGTGGTAAGAAGATTGTGATAAGTTCGAGAAGATTCTCTCGTTAAAGGAGAGTGGACACCGATAAAAAACGATTCGGTTCTTTCAAACAGTAGAAGGATGACAACATTTGTTGACGCCAGAACACTAGGAATTTGTCAGGGCCACAGTTTGTTACTGTGATTTGATGATAGTTAAAGAAAGAGATAATATGCACAGCGAATACATCCGTAGACATCAAAGATGATGGATTTTGTGGTTTGTTACTAGGTACAATGGGGTTATCTAGGTTGCTCATCTTCCACGGGGCATATCTCGCTTCGTTGAATTTCTATCTGAAAAGTGTCAACTACAAAAATGAAGCTCTATTTTTGTTTAATACTCTTTGAACTGTTTAGGCAAACTCAAAAAGTTTGAGGTTATTTTTAGGATTTTGAAAATGTAAAGTTTGCTGTTAACTGATGGAACGAGTTCCAMACCTTCAACTTTGATCCCTTATATCTTATTTTCTGTAAAAGATAGAAAAAAGTTGTCAACTGATAAATTGTTTATTATAACATCAGAAGTGCTTTGTCAGTTTACAATTTTCTGATATCTCTGACATGAACTGAGATGAACTAGCTGAAAGTTAAAAGTTAGGTTTACGGTAGTATCCTTCCATATTCCTGCAAACTGAATGCAATTTTTTGTATGTATTTAATTGTTATTCCGATTTTTGACATATTCAATTCAAGTACTTTTCTAAAACGTTCGTGATGTTTCCACCAATTCTTTGACCCTGAAAAGGCAGCCAATGGCTAATTGTTTTCTAATAGCCCATGTAATTTTTCCAACAACACTCTCTCTCTCGTGATTTTAGTTCTTCAGGTCATCCGAATAGCCACTTTAATTTGCTATCTTACACCCAAATGACGTTTAAAACAGTTTGCCGAAGTCGAGAATGACTTTAGATCAGATCAATCATCGCTTTCGGTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>187 131 90 74 74 66 50 46 42 41 36 34 31 20 20 15 14 14 9 4 2</canonical_bands>
                <polymorphic_bands>223 187 74 74 66 50 46 42 41 36 34 31 20 20 15 14 14 9 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGTACAATGGGGTTATCTAGG</pcr_primer_p1>
		<pcr_primer_p2>GCAGGAATATGGAAGGATACTA</pcr_primer_p2>
		<pcr_amplicon_size>400</pcr_amplicon_size>
		<canonical_amplicon>GGTACAATGGGGTTATCTAGGTTGCTCATCTTCCACGGGGCATATCTCGCTTCGTTGAATTTCTATCTGAAAAGTGTCAACTACAAAAATGAAGCTCTATTTTTGTTTAATACTCTTTGAACTGTTTAGGCAAACTCAAAAAGTTTGAGGTTATTTTTAGGATTTTGAAAATGTAAAGTTTGCTGTTAACTGATGGAACGAGTTCCACACCTTCAACTTTGATCCCTTATATCTTATTTTCTGTAAAAGATAGAAAAAAGTTGTCAACTGATAAATTGTTTATTATAACATCAGAAGTGCTTTGTCAGTTTACAATTTTCTGATATCTCTGACATGAACTGAGATGAACTAGCTGAAAGTTAAAAGTTAGGTTTACGGTAGTATCCTTCCATATTCCTGC</canonical_amplicon>
		<polymorphic_amplicon>GGTACAATGGGGTTATCTAGGTTGCTCATCTTCCACGGGGCATATCTCGCTTCGTTGAATTTCTATCTGAAAAGTGTCAACTACAAAAATGAAGCTCTATTTTTGTTTAATACTCTTTGAACTGTTTAGGCAAACTCAAAAAGTTTGAGGTTATTTTTAGGATTTTGAAAATGTAAAGTTTGCTGTTAACTGATGGAACGAGTTCCAMACCTTCAACTTTGATCCCTTATATCTTATTTTCTGTAAAAGATAGAAAAAAGTTGTCAACTGATAAATTGTTTATTATAACATCAGAAGTGCTTTGTCAGTTTACAATTTTCTGATATCTCTGACATGAACTGAGATGAACTAGCTGAAAGTTAAAAGTTAGGTTTACGGTAGTATCCTTCCATATTCCTGC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39786</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>146244</contig_pos>
        <strand></strand>
        <context>ccttatatct[T/C]attttctgta</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GTTAACTGATGGAACGAGTTCCACACCTTCAACTTTGATCCCTTATATCT</left_flank>
        <right_flank>ATTTTCTGTAAAAGATAGAAAAAAGTTGTCAACTGATAAATTGTTTATTA</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CGAGACGCATACATCAAGATGTGGTAAGAAGATTGTGATAAGTTCGAGAAGATTCTCTCGTTAAAGGAGAGTGGACACCGATAAAAAACGATTCGGTTCTTTCAAACAGTAGAAGGATGACAACATTTGTTGACGCCAGAACACTAGGAATTTGTCAGGGCCACAGTTTGTTACTGTGATTTGATGATAGTTAAAGAAAGAGATAATATGCACAGCGAATACATCCGTAGACATCAAAGATGATGGATTTTGTGGTTTGTTACTAGGTACAATGGGGTTATCTAGGTTGCTCATCTTCCACGGGGCATATCTCGCTTCGTTGAATTTCTATCTGAAAAGTGTCAACTACAAAAATGAAGCTCTATTTTTGTTTAATACTCTTTGAACTGTTTAGGCAAACTCAAAAAGTTTGAGGTTATTTTTAGGATTTTGAAAATGTAAAGTTTGCTGTTAACTGATGGAACGAGTTCCACACCTTCAACTTTGATCCCTTATATCTTATTTTCTGTAAAAGATAGAAAAAAGTTGTCAACTGATAAATTGTTTATTATAACATCAGAAGTGCTTTGTCAGTTTACAATTTTCTGATATCTCTGACATGAACTGAGATGAACTAGCTGAAAGTTAAAAGTTAGGTTTACGGTAGTATCCTTCCATATTCCTGCAAACTGAATGCAATTTTTTGTATGTATTTAATTGTTATTCCGATTTTTGACATATTCAATTCAAGTACTTTTCTAAAACGTTCGTGATGTTTCCACCAATTCTTTGACCCTGAAAAGGCAGCCAATGGCTAATTGTTTTCTAATAGCCCATGTAATTTTTCCAACAACACTCTCTCTCTCGTGATTTTAGTTCTTCAGGTCATCCGAATAGCCACTTTAATTTGCTATCTTACACCCAAATGACGTTTAAAACAGTTTGCCGAAGTCGAGAATGACTTTAGATCAGATCAATCATCGCTTTCGGTTCTTCAGTTCGATTCGTCGTTAAATATGAT</canonical>
            <polymorphic>CGAGACGCATACATCAAGATGTGGTAAGAAGATTGTGATAAGTTCGAGAAGATTCTCTCGTTAAAGGAGAGTGGACACCGATAAAAAACGATTCGGTTCTTTCAAACAGTAGAAGGATGACAACATTTGTTGACGCCAGAACACTAGGAATTTGTCAGGGCCACAGTTTGTTACTGTGATTTGATGATAGTTAAAGAAAGAGATAATATGCACAGCGAATACATCCGTAGACATCAAAGATGATGGATTTTGTGGTTTGTTACTAGGTACAATGGGGTTATCTAGGTTGCTCATCTTCCACGGGGCATATCTCGCTTCGTTGAATTTCTATCTGAAAAGTGTCAACTACAAAAATGAAGCTCTATTTTTGTTTAATACTCTTTGAACTGTTTAGGCAAACTCAAAAAGTTTGAGGTTATTTTTAGGATTTTGAAAATGTAAAGTTTGCTGTTAACTGATGGAACGAGTTCCACACCTTCAACTTTGATCCCTTATATCTYATTTTCTGTAAAAGATAGAAAAAAGTTGTCAACTGATAAATTGTTTATTATAACATCAGAAGTGCTTTGTCAGTTTACAATTTTCTGATATCTCTGACATGAACTGAGATGAACTAGCTGAAAGTTAAAAGTTAGGTTTACGGTAGTATCCTTCCATATTCCTGCAAACTGAATGCAATTTTTTGTATGTATTTAATTGTTATTCCGATTTTTGACATATTCAATTCAAGTACTTTTCTAAAACGTTCGTGATGTTTCCACCAATTCTTTGACCCTGAAAAGGCAGCCAATGGCTAATTGTTTTCTAATAGCCCATGTAATTTTTCCAACAACACTCTCTCTCTCGTGATTTTAGTTCTTCAGGTCATCCGAATAGCCACTTTAATTTGCTATCTTACACCCAAATGACGTTTAAAACAGTTTGCCGAAGTCGAGAATGACTTTAGATCAGATCAATCATCGCTTTCGGTTCTTCAGTTCGATTCGTCGTTAAATATGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTGAAAATGTAAAGTTTGCTGT</pcr_primer_p1>
		<pcr_primer_p2>CATTCAGTTTGCAGGAATATG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>TTTGAAAATGTAAAGTTTGCTGTTAACTGATGGAACGAGTTCCACACCTTCAACTTTGATCCCTTATATCTTATTTTCTGTAAAAGATAGAAAAAAGTTGTCAACTGATAAATTGTTTATTATAACATCAGAAGTGCTTTGTCAGTTTACAATTTTCTGATATCTCTGACATGAACTGAGATGAACTAGCTGAAAGTTAAAAGTTAGGTTTACGGTAGTATCCTTCCATATTCCTGCAAACTGAATG</canonical_amplicon>
		<polymorphic_amplicon>TTTGAAAATGTAAAGTTTGCTGTTAACTGATGGAACGAGTTCCACACCTTCAACTTTGATCCCTTATATCTYATTTTCTGTAAAAGATAGAAAAAAGTTGTCAACTGATAAATTGTTTATTATAACATCAGAAGTGCTTTGTCAGTTTACAATTTTCTGATATCTCTGACATGAACTGAGATGAACTAGCTGAAAGTTAAAAGTTAGGTTTACGGTAGTATCCTTCCATATTCCTGCAAACTGAATG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39787</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>158210</contig_pos>
        <strand></strand>
        <context>agtgtcccta[A/C]acggtccagc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>AGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTA</left_flank>
        <right_flank>ACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGCGATATAAGAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTGTCTGAAACTTAAAATTCCAAAGAGATGAGAGACTTTTTGTGATGATTTTTAAACAAGAGGAAGACGAAAAAGAGAAGAAGAAGATGGAAGACGTGGAGAGTAGAATGTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCGCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAAATTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCTGGTTGCTGCATCAGTTTTTAGAAGCATCTGTAGCATAGGAAAAAAAATTAGGAAAGTTTAATTACCGTTTTTAACCCTCTAAAATTAATGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTAAACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGCGATATAAGAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAAGTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATCTGATGATTAGGTGGGCTTCTATTAAAGAAAATACGGTATTAAACTTCTCTGAACAAAAAACTTCAGGACATTATAAAGAAAATTGTTTAAGTTCATAATTTTCCGATATCTATTACAGGAGAAAAAAAACTGGGATTAAAGATATTGTATTTGGTCTAGTATAAGAAATAGGCAATAGTGAAATAGATCCAAAAGCAAAAGTGAATCTTATAGAAAGTTATAGAAAGTTGTGTTGTATAGTAATCTATATAAGAGAGAACTAAACCAAGAAGAAATCCGATTTCAGAGATGAATACATGACTGAACTCCGACTTATTACAGTAACCCTCAAATTCATCATACTCCGAA</canonical>
            <polymorphic>GCTGTCTGAAACTTAAAATTCCAAAGAGATGAGAGACTTTTTGTGATGATTTTTAAACAAGAGGAAGACGAAAAAGAGAAGAAGAAGATGGAAGACGTGGAGAGTAGAATGTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCGCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAAATTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCTGGTTGCTGCATCAGTTTTTAGAAGCATCTGTAGCATAGGAAAAAAAATTAGGAAAGTTTAATTACCGTTTTTAACCCTCTAAAATTAATGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTAMACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGCGATATAAGAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAAGTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATCTGATGATTAGGTGGGCTTCTATTAAAGAAAATACGGTATTAAACTTCTCTGAACAAAAAACTTCAGGACATTATAAAGAAAATTGTTTAAGTTCATAATTTTCCGATATCTATTACAGGAGAAAAAAAACTGGGATTAAAGATATTGTATTTGGTCTAGTATAAGAAATAGGCAATAGTGAAATAGATCCAAAAGCAAAAGTGAATCTTATAGAAAGTTATAGAAAGTTGTGTTGTATAGTAATCTATATAAGAGAGAACTAAACCAAGAAGAAATCCGATTTCAGAGATGAATACATGACTGAACTCCGACTTATTACAGTAACCCTCAAATTCATCATACTCCGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACCGTTTTTAACCCTCTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTCTTTATAATGTCCTGAAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>329</pcr_amplicon_size>
		<canonical_amplicon>TACCGTTTTTAACCCTCTAAAATTAATGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTAAACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGCGATATAAGAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAAGTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATCTGATGATTAGGTGGGCTTCTATTAAAGAAAATACGGTATTAAACTTCTCTGAACAAAAAACTTCAGGACATTATAAAGAA</canonical_amplicon>
		<polymorphic_amplicon>TACCGTTTTTAACCCTCTAAAATTAATGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTAMACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGCGATATAAGAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAAGTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATCTGATGATTAGGTGGGCTTCTATTAAAGAAAATACGGTATTAAACTTCTCTGAACAAAAAACTTCAGGACATTATAAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39788</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>158250</contig_pos>
        <strand></strand>
        <context>ttcctgtcag[C/A]gatataaraa</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>AGTGTCCCTAAACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAG</left_flank>
        <right_flank>GATATAAGAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAG</right_flank>
        <qual_score>41</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTGATGATTTTTAAACAAGAGGAAGACGAAAAAGAGAAGAAGAAGATGGAAGACGTGGAGAGTAGAATGTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCGCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAAATTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCTGGTTGCTGCATCAGTTTTTAGAAGCATCTGTAGCATAGGAAAAAAAATTAGGAAAGTTTAATTACCGTTTTTAACCCTCTAAAATTAATGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTAAACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGCGATATAAGAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAAGTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATCTGATGATTAGGTGGGCTTCTATTAAAGAAAATACGGTATTAAACTTCTCTGAACAAAAAACTTCAGGACATTATAAAGAAAATTGTTTAAGTTCATAATTTTCCGATATCTATTACAGGAGAAAAAAAACTGGGATTAAAGATATTGTATTTGGTCTAGTATAAGAAATAGGCAATAGTGAAATAGATCCAAAAGCAAAAGTGAATCTTATAGAAAGTTATAGAAAGTTGTGTTGTATAGTAATCTATATAAGAGAGAACTAAACCAAGAAGAAATCCGATTTCAGAGATGAATACATGACTGAACTCCGACTTATTACAGTAACCCTCAAATTCATCATACTCCGAAATTTCGGTTAGAAATCGTCTTTCATTTCGGACGAACTGTT</canonical>
            <polymorphic>TTGTGATGATTTTTAAACAAGAGGAAGACGAAAAAGAGAAGAAGAAGATGGAAGACGTGGAGAGTAGAATGTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCGCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAAATTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCTGGTTGCTGCATCAGTTTTTAGAAGCATCTGTAGCATAGGAAAAAAAATTAGGAAAGTTTAATTACCGTTTTTAACCCTCTAAAATTAATGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTAAACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGMGATATAAGAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAAGTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATCTGATGATTAGGTGGGCTTCTATTAAAGAAAATACGGTATTAAACTTCTCTGAACAAAAAACTTCAGGACATTATAAAGAAAATTGTTTAAGTTCATAATTTTCCGATATCTATTACAGGAGAAAAAAAACTGGGATTAAAGATATTGTATTTGGTCTAGTATAAGAAATAGGCAATAGTGAAATAGATCCAAAAGCAAAAGTGAATCTTATAGAAAGTTATAGAAAGTTGTGTTGTATAGTAATCTATATAAGAGAGAACTAAACCAAGAAGAAATCCGATTTCAGAGATGAATACATGACTGAACTCCGACTTATTACAGTAACCCTCAAATTCATCATACTCCGAAATTTCGGTTAGAAATCGTCTTTCATTTCGGACGAACTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACCGTTTTTAACCCTCTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTCTTTATAATGTCCTGAAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>329</pcr_amplicon_size>
		<canonical_amplicon>TACCGTTTTTAACCCTCTAAAATTAATGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTAAACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGCGATATAAGAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAAGTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATCTGATGATTAGGTGGGCTTCTATTAAAGAAAATACGGTATTAAACTTCTCTGAACAAAAAACTTCAGGACATTATAAAGAA</canonical_amplicon>
		<polymorphic_amplicon>TACCGTTTTTAACCCTCTAAAATTAATGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTAAACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGMGATATAAGAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAAGTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATCTGATGATTAGGTGGGCTTCTATTAAAGAAAATACGGTATTAAACTTCTCTGAACAAAAAACTTCAGGACATTATAAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39789</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>158258</contig_pos>
        <strand></strand>
        <context>agmgatataa[G/A]aaatgtgtta</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TAAACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGCGATATAA</left_flank>
        <right_flank>AAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTTTAAACAAGAGGAAGACGAAAAAGAGAAGAAGAAGATGGAAGACGTGGAGAGTAGAATGTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCGCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAAATTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCTGGTTGCTGCATCAGTTTTTAGAAGCATCTGTAGCATAGGAAAAAAAATTAGGAAAGTTTAATTACCGTTTTTAACCCTCTAAAATTAATGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTAAACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGCGATATAAGAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAAGTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATCTGATGATTAGGTGGGCTTCTATTAAAGAAAATACGGTATTAAACTTCTCTGAACAAAAAACTTCAGGACATTATAAAGAAAATTGTTTAAGTTCATAATTTTCCGATATCTATTACAGGAGAAAAAAAACTGGGATTAAAGATATTGTATTTGGTCTAGTATAAGAAATAGGCAATAGTGAAATAGATCCAAAAGCAAAAGTGAATCTTATAGAAAGTTATAGAAAGTTGTGTTGTATAGTAATCTATATAAGAGAGAACTAAACCAAGAAGAAATCCGATTTCAGAGATGAATACATGACTGAACTCCGACTTATTACAGTAACCCTCAAATTCATCATACTCCGAAATTTCGGTTAGAAATCGTCTTTCATTTCGGACGAACTGTTCGAATTAC</canonical>
            <polymorphic>ATTTTTAAACAAGAGGAAGACGAAAAAGAGAAGAAGAAGATGGAAGACGTGGAGAGTAGAATGTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCGCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAAATTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCTGGTTGCTGCATCAGTTTTTAGAAGCATCTGTAGCATAGGAAAAAAAATTAGGAAAGTTTAATTACCGTTTTTAACCCTCTAAAATTAATGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTAAACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGCGATATAARAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAAGTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATCTGATGATTAGGTGGGCTTCTATTAAAGAAAATACGGTATTAAACTTCTCTGAACAAAAAACTTCAGGACATTATAAAGAAAATTGTTTAAGTTCATAATTTTCCGATATCTATTACAGGAGAAAAAAAACTGGGATTAAAGATATTGTATTTGGTCTAGTATAAGAAATAGGCAATAGTGAAATAGATCCAAAAGCAAAAGTGAATCTTATAGAAAGTTATAGAAAGTTGTGTTGTATAGTAATCTATATAAGAGAGAACTAAACCAAGAAGAAATCCGATTTCAGAGATGAATACATGACTGAACTCCGACTTATTACAGTAACCCTCAAATTCATCATACTCCGAAATTTCGGTTAGAAATCGTCTTTCATTTCGGACGAACTGTTCGAATTAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACCGTTTTTAACCCTCTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTCTTTATAATGTCCTGAAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>329</pcr_amplicon_size>
		<canonical_amplicon>TACCGTTTTTAACCCTCTAAAATTAATGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTAAACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGCGATATAAGAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAAGTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATCTGATGATTAGGTGGGCTTCTATTAAAGAAAATACGGTATTAAACTTCTCTGAACAAAAAACTTCAGGACATTATAAAGAA</canonical_amplicon>
		<polymorphic_amplicon>TACCGTTTTTAACCCTCTAAAATTAATGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTAAACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGCGATATAARAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAAGTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATCTGATGATTAGGTGGGCTTCTATTAAAGAAAATACGGTATTAAACTTCTCTGAACAAAAAACTTCAGGACATTATAAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39790</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>158319</contig_pos>
        <strand></strand>
        <context>agttgactaa[G/T]ttttgatatc</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAA</left_flank>
        <right_flank>TTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATCTGATGAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCGCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAAATTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCTGGTTGCTGCATCAGTTTTTAGAAGCATCTGTAGCATAGGAAAAAAAATTAGGAAAGTTTAATTACCGTTTTTAACCCTCTAAAATTAATGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTAAACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGCGATATAAGAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAAGTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATCTGATGATTAGGTGGGCTTCTATTAAAGAAAATACGGTATTAAACTTCTCTGAACAAAAAACTTCAGGACATTATAAAGAAAATTGTTTAAGTTCATAATTTTCCGATATCTATTACAGGAGAAAAAAAACTGGGATTAAAGATATTGTATTTGGTCTAGTATAAGAAATAGGCAATAGTGAAATAGATCCAAAAGCAAAAGTGAATCTTATAGAAAGTTATAGAAAGTTGTGTTGTATAGTAATCTATATAAGAGAGAACTAAACCAAGAAGAAATCCGATTTCAGAGATGAATACATGACTGAACTCCGACTTATTACAGTAACCCTCAAATTCATCATACTCCGAAATTTCGGTTAGAAATCGTCTTTCATTTCGGACGAACTGTTCGAATTACACATTTTCACCTTGACAAAACCATAAAGGCGATACCATCGAAACGAAGAAACATTACAATT</canonical>
            <polymorphic>TGTCTCTATTCCTCTTCTTCGTTAGGCATCGGTACGCGGTGTGGGCCTCGCGCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAAATTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCTGGTTGCTGCATCAGTTTTTAGAAGCATCTGTAGCATAGGAAAAAAAATTAGGAAAGTTTAATTACCGTTTTTAACCCTCTAAAATTAATGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTAAACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGCGATATAAGAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAAKTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATCTGATGATTAGGTGGGCTTCTATTAAAGAAAATACGGTATTAAACTTCTCTGAACAAAAAACTTCAGGACATTATAAAGAAAATTGTTTAAGTTCATAATTTTCCGATATCTATTACAGGAGAAAAAAAACTGGGATTAAAGATATTGTATTTGGTCTAGTATAAGAAATAGGCAATAGTGAAATAGATCCAAAAGCAAAAGTGAATCTTATAGAAAGTTATAGAAAGTTGTGTTGTATAGTAATCTATATAAGAGAGAACTAAACCAAGAAGAAATCCGATTTCAGAGATGAATACATGACTGAACTCCGACTTATTACAGTAACCCTCAAATTCATCATACTCCGAAATTTCGGTTAGAAATCGTCTTTCATTTCGGACGAACTGTTCGAATTACACATTTTCACCTTGACAAAACCATAAAGGCGATACCATCGAAACGAAGAAACATTACAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CTNAG</site>
                <isoschizomers>
                    <enzyme>BstDEI</enzyme>
                    <enzyme>DdeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACCGTTTTTAACCCTCTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTCTTTATAATGTCCTGAAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>329</pcr_amplicon_size>
		<canonical_amplicon>TACCGTTTTTAACCCTCTAAAATTAATGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTAAACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGCGATATAAGAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAAGTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATCTGATGATTAGGTGGGCTTCTATTAAAGAAAATACGGTATTAAACTTCTCTGAACAAAAAACTTCAGGACATTATAAAGAA</canonical_amplicon>
		<polymorphic_amplicon>TACCGTTTTTAACCCTCTAAAATTAATGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTAAACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGCGATATAAGAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAAKTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATCTGATGATTAGGTGGGCTTCTATTAAAGAAAATACGGTATTAAACTTCTCTGAACAAAAAACTTCAGGACATTATAAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39791</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>158362</contig_pos>
        <strand></strand>
        <context>gagctcaaat[C/T]tgatgattag</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TGACTAAGTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAAT</left_flank>
        <right_flank>TGATGATTAGGTGGGCTTCTATTAAAGAAAATACGGTATTAAACTTCTCT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCCTCGCGCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAAATTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCTGGTTGCTGCATCAGTTTTTAGAAGCATCTGTAGCATAGGAAAAAAAATTAGGAAAGTTTAATTACCGTTTTTAACCCTCTAAAATTAATGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTAAACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGCGATATAAGAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAAGTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATCTGATGATTAGGTGGGCTTCTATTAAAGAAAATACGGTATTAAACTTCTCTGAACAAAAAACTTCAGGACATTATAAAGAAAATTGTTTAAGTTCATAATTTTCCGATATCTATTACAGGAGAAAAAAAACTGGGATTAAAGATATTGTATTTGGTCTAGTATAAGAAATAGGCAATAGTGAAATAGATCCAAAAGCAAAAGTGAATCTTATAGAAAGTTATAGAAAGTTGTGTTGTATAGTAATCTATATAAGAGAGAACTAAACCAAGAAGAAATCCGATTTCAGAGATGAATACATGACTGAACTCCGACTTATTACAGTAACCCTCAAATTCATCATACTCCGAAATTTCGGTTAGAAATCGTCTTTCATTTCGGACGAACTGTTCGAATTACACATTTTCACCTTGACAAAACCATAAAGGCGATACCATCGAAACGAAGAAACATTACAATTTGAAAGGCAACAAGGAACCTCTGCATTTCAAGCTGAACCGAAT</canonical>
            <polymorphic>GGCCTCGCGCTTGTTTTCCACTATCCCGTTCAAGATTGTGATCTTGACGAAGACTCTTCAGGTTCTAAACGAACTTCCGATCCGAAAAATCATTGATTTTTCGAAAATTATAGTTTTGTGATTACTAATATCTGATTAGAAAGTAGAAGTTTTTTTTAAAAATAGATTTAGGCTTACCGTATAATTCCTGGTTGCTGCATCAGTTTTTAGAAGCATCTGTAGCATAGGAAAAAAAATTAGGAAAGTTTAATTACCGTTTTTAACCCTCTAAAATTAATGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTAAACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGCGATATAAGAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAAGTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATYTGATGATTAGGTGGGCTTCTATTAAAGAAAATACGGTATTAAACTTCTCTGAACAAAAAACTTCAGGACATTATAAAGAAAATTGTTTAAGTTCATAATTTTCCGATATCTATTACAGGAGAAAAAAAACTGGGATTAAAGATATTGTATTTGGTCTAGTATAAGAAATAGGCAATAGTGAAATAGATCCAAAAGCAAAAGTGAATCTTATAGAAAGTTATAGAAAGTTGTGTTGTATAGTAATCTATATAAGAGAGAACTAAACCAAGAAGAAATCCGATTTCAGAGATGAATACATGACTGAACTCCGACTTATTACAGTAACCCTCAAATTCATCATACTCCGAAATTTCGGTTAGAAATCGTCTTTCATTTCGGACGAACTGTTCGAATTACACATTTTCACCTTGACAAAACCATAAAGGCGATACCATCGAAACGAAGAAACATTACAATTTGAAAGGCAACAAGGAACCTCTGCATTTCAAGCTGAACCGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCNGA</site>
                <isoschizomers>
                    <enzyme>Hpy188I</enzyme>
                </isoschizomers>
                <canonical_bands>368 174 123 78 54 50 49 36 32 24 7 5</canonical_bands>
                <polymorphic_bands>417 174 123 78 54 50 36 32 24 7 5</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACCGTTTTTAACCCTCTAAAAT</pcr_primer_p1>
		<pcr_primer_p2>TTCTTTATAATGTCCTGAAGTTTTT</pcr_primer_p2>
		<pcr_amplicon_size>329</pcr_amplicon_size>
		<canonical_amplicon>TACCGTTTTTAACCCTCTAAAATTAATGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTAAACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGCGATATAAGAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAAGTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATCTGATGATTAGGTGGGCTTCTATTAAAGAAAATACGGTATTAAACTTCTCTGAACAAAAAACTTCAGGACATTATAAAGAA</canonical_amplicon>
		<polymorphic_amplicon>TACCGTTTTTAACCCTCTAAAATTAATGATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTGCATTAGAAGTGTCCCTAAACGGTCCAGCTTGAACTAATTTATCTCGATTCCTGTCAGCGATATAAGAAATGTGTTAGCTGATAAAGCATTGGTGCTATTATGATAAAGAATTCATCAGTTGACTAAGTTTTGATATCTTTCACTATAATCCAGATAATTGAGCTCAAATYTGATGATTAGGTGGGCTTCTATTAAAGAAAATACGGTATTAAACTTCTCTGAACAAAAAACTTCAGGACATTATAAAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39792</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>160636</contig_pos>
        <strand>+</strand>
        <context>CTACCTCCAC[A/T]CCGGTTTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGTTTACGTTTTTCCCCTTCTACTTTTGTTCGGTTTTCACCTACCTCCAC</left_flank>
        <right_flank>CCGGTTTTCTTTGAGTTACCACTGCTTTTTTTGTTCCTATTCTCGACGTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACCCAACAAAAAAAGCAATTTATCCGAATTGTCCGTAGGTGTTTAACTATCTGGAAACACATTTCCGTCTCCGGTGGAGAGGTTGATTAAAGAATGAGGTAGTTCTAATAGAAGGGGCGGGGCTAGAGTTATCTCCCTTCTTCCTCTTTCCGAATACATCATGTGTGTTTTTTCTTTTGTGTATCCATGTCAAATTTGATATCCTCATCCCTTTCCCTTATATCCTTCCCTATGCCATGTTCCCCATCTTTGCTTTGTTTCTTTTTTCCTTTCATGCCAGACACATCCTTTTCCACACCTATATTTTTTGAATTTCAACTCAAAGAGATTCTGCAAAATGCATACAAAAATAAACTTGGTTAAAGAAAGTGGGTCACACAAAAAAAGATAGAAAGAAGATAGTGGATGTGTCATCATAAAACAGGAAATAAAATTGTGCGGACCTTTGAGTTTACGTTTTTCCCCTTCTACTTTTGTTCGGTTTTCACCTACCTCCACTCCGGTTTTCTTTGAGTTACCACTGCTTTTTTTGTTCCTATTCTCGACGTTATCAATTATATATAAAGGTTTTCTTTTTCAACTTCCTTCTGGCTCAGTTTCAGAAGATCAGTCTCGGAGTCAGTATTACTCTAGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAATAATTTTGGAGTAATTTGGGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATAT</canonical>
            <polymorphic>CACCCAACAAAAAAAGCAATTTATCCGAATTGTCCGTAGGTGTTTAACTATCTGGAAACACATTTCCGTCTCCGGTGGAGAGGTTGATTAAAGAATGAGGTAGTTCTAATAGAAGGGGCGGGGCTAGAGTTATCTCCCTTCTTCCTCTTTCCGAATACATCATGTGTGTTTTTTCTTTTGTGTATCCATGTCAAATTTGATATCCTCATCCCTTTCCCTTATATCCTTCCCTATGCCATGTTCCCCATCTTTGCTTTGTTTCTTTTTTCCTTTCATGCCAGACACATCCTTTTCCACACCTATATTTTTTGAATTTCAACTCAAAGAGATTCTGCAAAATGCATACAAAAATAAACTTGGTTAAAGAAAGTGGGTCACACAAAAAAAGATAGAAAGAAGATAGTGGATGTGTCATCATAAAACAGGAAATAAAATTGTGCGGACCTTTGAGTTTACGTTTTTCCCCTTCTACTTTTGTTCGGTTTTCACCTACCTCCACWCCGGTTTTCTTTGAGTTACCACTGCTTTTTTTGTTCCTATTCTCGACGTTATCAATTATATATAAAGGTTTTCTTTTTCAACTTCCTTCTGGCTCAGTTTCAGAAGATCAGTCTCGGAGTCAGTATTACTCTAGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAATAATTTTGGAGTAATTTGGGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WCCGGW</site>
                <isoschizomers>
                    <enzyme>BetI</enzyme>
                    <enzyme>BsaWI</enzyme>
                </isoschizomers>
                <canonical_bands>500 429 71</canonical_bands>
                <polymorphic_bands>929 71</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAATTTCAACTCAAAGAGATTC</pcr_primer_p1>
		<pcr_primer_p2>TAATTGATAACGTCGAGAATAGG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TGAATTTCAACTCAAAGAGATTCTGCAAAATGCATACAAAAATAAACTTGGTTAAAGAAAGTGGGTCACACAAAAAAAGATAGAAAGAAGATAGTGGATGTGTCATCATAAAACAGGAAATAAAATTGTGCGGACCTTTGAGTTTACGTTTTTCCCCTTCTACTTTTGTTCGGTTTTCACCTACCTCCACTCCGGTTTTCTTTGAGTTACCACTGCTTTTTTTGTTCCTATTCTCGACGTTATCAATTA</canonical_amplicon>
		<polymorphic_amplicon>TGAATTTCAACTCAAAGAGATTCTGCAAAATGCATACAAAAATAAACTTGGTTAAAGAAAGTGGGTCACACAAAAAAAGATAGAAAGAAGATAGTGGATGTGTCATCATAAAACAGGAAATAAAATTGTGCGGACCTTTGAGTTTACGTTTTTCCCCTTCTACTTTTGTTCGGTTTTCACCTACCTCCACWCCGGTTTTCTTTGAGTTACCACTGCTTTTTTTGTTCCTATTCTCGACGTTATCAATTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39793</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>160668</contig_pos>
        <strand>+</strand>
        <context>CTGCTTTTTT[C/T]GTTCCTATTC</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GTTTTCACCTACCTCCACTCCGGTTTTCTTTGAGTTACCACTGCTTTTTT</left_flank>
        <right_flank>GTTCCTATTCTCGACGTTATCAATTATATATAAAGGTTTTCTTTTTCAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCGTAGGTGTTTAACTATCTGGAAACACATTTCCGTCTCCGGTGGAGAGGTTGATTAAAGAATGAGGTAGTTCTAATAGAAGGGGCGGGGCTAGAGTTATCTCCCTTCTTCCTCTTTCCGAATACATCATGTGTGTTTTTTCTTTTGTGTATCCATGTCAAATTTGATATCCTCATCCCTTTCCCTTATATCCTTCCCTATGCCATGTTCCCCATCTTTGCTTTGTTTCTTTTTTCCTTTCATGCCAGACACATCCTTTTCCACACCTATATTTTTTGAATTTCAACTCAAAGAGATTCTGCAAAATGCATACAAAAATAAACTTGGTTAAAGAAAGTGGGTCACACAAAAAAAGATAGAAAGAAGATAGTGGATGTGTCATCATAAAACAGGAAATAAAATTGTGCGGACCTTTGAGTTTACGTTTTTCCCCTTCTACTTTTGTTCGGTTTTCACCTACCTCCACTCCGGTTTTCTTTGAGTTACCACTGCTTTTTTTGTTCCTATTCTCGACGTTATCAATTATATATAAAGGTTTTCTTTTTCAACTTCCTTCTGGCTCAGTTTCAGAAGATCAGTCTCGGAGTCAGTATTACTCTAGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAATAATTTTGGAGTAATTTGGGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTT</canonical>
            <polymorphic>TCCGTAGGTGTTTAACTATCTGGAAACACATTTCCGTCTCCGGTGGAGAGGTTGATTAAAGAATGAGGTAGTTCTAATAGAAGGGGCGGGGCTAGAGTTATCTCCCTTCTTCCTCTTTCCGAATACATCATGTGTGTTTTTTCTTTTGTGTATCCATGTCAAATTTGATATCCTCATCCCTTTCCCTTATATCCTTCCCTATGCCATGTTCCCCATCTTTGCTTTGTTTCTTTTTTCCTTTCATGCCAGACACATCCTTTTCCACACCTATATTTTTTGAATTTCAACTCAAAGAGATTCTGCAAAATGCATACAAAAATAAACTTGGTTAAAGAAAGTGGGTCACACAAAAAAAGATAGAAAGAAGATAGTGGATGTGTCATCATAAAACAGGAAATAAAATTGTGCGGACCTTTGAGTTTACGTTTTTCCCCTTCTACTTTTGTTCGGTTTTCACCTACCTCCACTCCGGTTTTCTTTGAGTTACCACTGCTTTTTTYGTTCCTATTCTCGACGTTATCAATTATATATAAAGGTTTTCTTTTTCAACTTCCTTCTGGCTCAGTTTCAGAAGATCAGTCTCGGAGTCAGTATTACTCTAGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAATAATTTTGGAGTAATTTGGGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTACTTTTGTTCGGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATTTGCTCAGTACCCAAATTACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTCTACTTTTGTTCGGTTTTCACCTACCTCCACTCCGGTTTTCTTTGAGTTACCACTGCTTTTTTTGTTCCTATTCTCGACGTTATCAATTATATATAAAGGTTTTCTTTTTCAACTTCCTTCTGGCTCAGTTTCAGAAGATCAGTCTCGGAGTCAGTATTACTCTAGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAATAATTTTGGAGTAATTTGGGTACTGAGCAAAT</canonical_amplicon>
		<polymorphic_amplicon>CTTCTACTTTTGTTCGGTTTTCACCTACCTCCACTCCGGTTTTCTTTGAGTTACCACTGCTTTTTTYGTTCCTATTCTCGACGTTATCAATTATATATAAAGGTTTTCTTTTTCAACTTCCTTCTGGCTCAGTTTCAGAAGATCAGTCTCGGAGTCAGTATTACTCTAGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAATAATTTTGGAGTAATTTGGGTACTGAGCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39794</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>160725</contig_pos>
        <strand>+</strand>
        <context>CAACTTCCTT[C/T]TGGCTCAGTT</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATTCTCGACGTTATCAATTATATATAAAGGTTTTCTTTTTCAACTTCCTT</left_flank>
        <right_flank>TGGCTCAGTTTCAGAAGATCAGTCTCGGAGTCAGTATTACTCTAGGCTAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAGAATGAGGTAGTTCTAATAGAAGGGGCGGGGCTAGAGTTATCTCCCTTCTTCCTCTTTCCGAATACATCATGTGTGTTTTTTCTTTTGTGTATCCATGTCAAATTTGATATCCTCATCCCTTTCCCTTATATCCTTCCCTATGCCATGTTCCCCATCTTTGCTTTGTTTCTTTTTTCCTTTCATGCCAGACACATCCTTTTCCACACCTATATTTTTTGAATTTCAACTCAAAGAGATTCTGCAAAATGCATACAAAAATAAACTTGGTTAAAGAAAGTGGGTCACACAAAAAAAGATAGAAAGAAGATAGTGGATGTGTCATCATAAAACAGGAAATAAAATTGTGCGGACCTTTGAGTTTACGTTTTTCCCCTTCTACTTTTGTTCGGTTTTCACCTACCTCCACTCCGGTTTTCTTTGAGTTACCACTGCTTTTTTTGTTCCTATTCTCGACGTTATCAATTATATATAAAGGTTTTCTTTTTCAACTTCCTTCTGGCTCAGTTTCAGAAGATCAGTCTCGGAGTCAGTATTACTCTAGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAATAATTTTGGAGTAATTTGGGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGT</canonical>
            <polymorphic>AAAGAATGAGGTAGTTCTAATAGAAGGGGCGGGGCTAGAGTTATCTCCCTTCTTCCTCTTTCCGAATACATCATGTGTGTTTTTTCTTTTGTGTATCCATGTCAAATTTGATATCCTCATCCCTTTCCCTTATATCCTTCCCTATGCCATGTTCCCCATCTTTGCTTTGTTTCTTTTTTCCTTTCATGCCAGACACATCCTTTTCCACACCTATATTTTTTGAATTTCAACTCAAAGAGATTCTGCAAAATGCATACAAAAATAAACTTGGTTAAAGAAAGTGGGTCACACAAAAAAAGATAGAAAGAAGATAGTGGATGTGTCATCATAAAACAGGAAATAAAATTGTGCGGACCTTTGAGTTTACGTTTTTCCCCTTCTACTTTTGTTCGGTTTTCACCTACCTCCACTCCGGTTTTCTTTGAGTTACCACTGCTTTTTTTGTTCCTATTCTCGACGTTATCAATTATATATAAAGGTTTTCTTTTTCAACTTCCTTYTGGCTCAGTTTCAGAAGATCAGTCTCGGAGTCAGTATTACTCTAGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAATAATTTTGGAGTAATTTGGGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTCTACTTTTGTTCGGTTTTC</pcr_primer_p1>
		<pcr_primer_p2>ATTTGCTCAGTACCCAAATTACT</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>CTTCTACTTTTGTTCGGTTTTCACCTACCTCCACTCCGGTTTTCTTTGAGTTACCACTGCTTTTTTTGTTCCTATTCTCGACGTTATCAATTATATATAAAGGTTTTCTTTTTCAACTTCCTTCTGGCTCAGTTTCAGAAGATCAGTCTCGGAGTCAGTATTACTCTAGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAATAATTTTGGAGTAATTTGGGTACTGAGCAAAT</canonical_amplicon>
		<polymorphic_amplicon>CTTCTACTTTTGTTCGGTTTTCACCTACCTCCACTCCGGTTTTCTTTGAGTTACCACTGCTTTTTTTGTTCCTATTCTCGACGTTATCAATTATATATAAAGGTTTTCTTTTTCAACTTCCTTYTGGCTCAGTTTCAGAAGATCAGTCTCGGAGTCAGTATTACTCTAGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAATAATTTTGGAGTAATTTGGGTACTGAGCAAAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39795</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>160819</contig_pos>
        <strand>+</strand>
        <context>GAGGGTACAA[A/T]AATTTTGGAG</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAA</left_flank>
        <right_flank>AATTTTGGAGTAATTTGGGTACTGAGCAAATCAGAGGTACAAAGTCCTCA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCCATGTCAAATTTGATATCCTCATCCCTTTCCCTTATATCCTTCCCTATGCCATGTTCCCCATCTTTGCTTTGTTTCTTTTTTCCTTTCATGCCAGACACATCCTTTTCCACACCTATATTTTTTGAATTTCAACTCAAAGAGATTCTGCAAAATGCATACAAAAATAAACTTGGTTAAAGAAAGTGGGTCACACAAAAAAAGATAGAAAGAAGATAGTGGATGTGTCATCATAAAACAGGAAATAAAATTGTGCGGACCTTTGAGTTTACGTTTTTCCCCTTCTACTTTTGTTCGGTTTTCACCTACCTCCACTCCGGTTTTCTTTGAGTTACCACTGCTTTTTTTGTTCCTATTCTCGACGTTATCAATTATATATAAAGGTTTTCTTTTTCAACTTCCTTCTGGCTCAGTTTCAGAAGATCAGTCTCGGAGTCAGTATTACTCTAGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAATAATTTTGGAGTAATTTGGGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGTTCTATTAGAGTGTTTATGGTATGTTTTGCAATCAGTCTCTGGCCATTTTTTTTTTCGATTTTCCGATGAGCCCCTTAAATGTTTTACTTTTTTC</canonical>
            <polymorphic>ATCCATGTCAAATTTGATATCCTCATCCCTTTCCCTTATATCCTTCCCTATGCCATGTTCCCCATCTTTGCTTTGTTTCTTTTTTCCTTTCATGCCAGACACATCCTTTTCCACACCTATATTTTTTGAATTTCAACTCAAAGAGATTCTGCAAAATGCATACAAAAATAAACTTGGTTAAAGAAAGTGGGTCACACAAAAAAAGATAGAAAGAAGATAGTGGATGTGTCATCATAAAACAGGAAATAAAATTGTGCGGACCTTTGAGTTTACGTTTTTCCCCTTCTACTTTTGTTCGGTTTTCACCTACCTCCACTCCGGTTTTCTTTGAGTTACCACTGCTTTTTTTGTTCCTATTCTCGACGTTATCAATTATATATAAAGGTTTTCTTTTTCAACTTCCTTCTGGCTCAGTTTCAGAAGATCAGTCTCGGAGTCAGTATTACTCTAGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAAWAATTTTGGAGTAATTTGGGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGTTCTATTAGAGTGTTTATGGTATGTTTTGCAATCAGTCTCTGGCCATTTTTTTTTTCGATTTTCCGATGAGCCCCTTAAATGTTTTACTTTTTTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATCAGTCTCGGAGTCAGTATTA</pcr_primer_p1>
		<pcr_primer_p2>ATAATTCGGATTGTACAACAGTG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GATCAGTCTCGGAGTCAGTATTACTCTAGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAATAATTTTGGAGTAATTTGGGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTAT</canonical_amplicon>
		<polymorphic_amplicon>GATCAGTCTCGGAGTCAGTATTACTCTAGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAAWAATTTTGGAGTAATTTGGGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39796</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>160874</contig_pos>
        <strand></strand>
        <context>tcctcaatta[A/G]agagtaaaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTGGAGTAATTTGGGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTA</left_flank>
        <right_flank>AGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGAT</right_flank>
        <qual_score>40</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGTTCCCCATCTTTGCTTTGTTTCTTTTTTCCTTTCATGCCAGACACATCCTTTTCCACACCTATATTTTTTGAATTTCAACTCAAAGAGATTCTGCAAAATGCATACAAAAATAAACTTGGTTAAAGAAAGTGGGTCACACAAAAAAAGATAGAAAGAAGATAGTGGATGTGTCATCATAAAACAGGAAATAAAATTGTGCGGACCTTTGAGTTTACGTTTTTCCCCTTCTACTTTTGTTCGGTTTTCACCTACCTCCACTCCGGTTTTCTTTGAGTTACCACTGCTTTTTTTGTTCCTATTCTCGACGTTATCAATTATATATAAAGGTTTTCTTTTTCAACTTCCTTCTGGCTCAGTTTCAGAAGATCAGTCTCGGAGTCAGTATTACTCTAGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAATAATTTTGGAGTAATTTGGGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGTTCTATTAGAGTGTTTATGGTATGTTTTGCAATCAGTCTCTGGCCATTTTTTTTTTCGATTTTCCGATGAGCCCCTTAAATGTTTTACTTTTTTCATATAAATCGGAAAAATGACATGGAAAGCAAAACTTTTTTTTCGATTTTTCAACA</canonical>
            <polymorphic>TGTTCCCCATCTTTGCTTTGTTTCTTTTTTCCTTTCATGCCAGACACATCCTTTTCCACACCTATATTTTTTGAATTTCAACTCAAAGAGATTCTGCAAAATGCATACAAAAATAAACTTGGTTAAAGAAAGTGGGTCACACAAAAAAAGATAGAAAGAAGATAGTGGATGTGTCATCATAAAACAGGAAATAAAATTGTGCGGACCTTTGAGTTTACGTTTTTCCCCTTCTACTTTTGTTCGGTTTTCACCTACCTCCACTCCGGTTTTCTTTGAGTTACCACTGCTTTTTTTGTTCCTATTCTCGACGTTATCAATTATATATAAAGGTTTTCTTTTTCAACTTCCTTCTGGCTCAGTTTCAGAAGATCAGTCTCGGAGTCAGTATTACTCTAGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAATAATTTTGGAGTAATTTGGGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTARAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGTTCTATTAGAGTGTTTATGGTATGTTTTGCAATCAGTCTCTGGCCATTTTTTTTTTCGATTTTCCGATGAGCCCCTTAAATGTTTTACTTTTTTCATATAAATCGGAAAAATGACATGGAAAGCAAAACTTTTTTTTCGATTTTTCAACA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>374 199 123 107 90 74 33</canonical_bands>
                <polymorphic_bands>407 199 123 107 90 74</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GATCAGTCTCGGAGTCAGTATTA</pcr_primer_p1>
		<pcr_primer_p2>ATAATTCGGATTGTACAACAGTG</pcr_primer_p2>
		<pcr_amplicon_size>244</pcr_amplicon_size>
		<canonical_amplicon>GATCAGTCTCGGAGTCAGTATTACTCTAGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAATAATTTTGGAGTAATTTGGGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTAT</canonical_amplicon>
		<polymorphic_amplicon>GATCAGTCTCGGAGTCAGTATTACTCTAGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAATAATTTTGGAGTAATTTGGGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTARAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39797</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>160951</contig_pos>
        <strand></strand>
        <context>actttggaag[A/C]cttgcaccsc</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAG</left_flank>
        <right_flank>CTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAATTCG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAACTCAAAGAGATTCTGCAAAATGCATACAAAAATAAACTTGGTTAAAGAAAGTGGGTCACACAAAAAAAGATAGAAAGAAGATAGTGGATGTGTCATCATAAAACAGGAAATAAAATTGTGCGGACCTTTGAGTTTACGTTTTTCCCCTTCTACTTTTGTTCGGTTTTCACCTACCTCCACTCCGGTTTTCTTTGAGTTACCACTGCTTTTTTTGTTCCTATTCTCGACGTTATCAATTATATATAAAGGTTTTCTTTTTCAACTTCCTTCTGGCTCAGTTTCAGAAGATCAGTCTCGGAGTCAGTATTACTCTAGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAATAATTTTGGAGTAATTTGGGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGTTCTATTAGAGTGTTTATGGTATGTTTTGCAATCAGTCTCTGGCCATTTTTTTTTTCGATTTTCCGATGAGCCCCTTAAATGTTTTACTTTTTTCATATAAATCGGAAAAATGACATGGAAAGCAAAACTTTTTTTTCGATTTTTCAACAATTTTCATCGGTTTTGTACATTTTTTTCATACAAAAATTCGGAAAACCGCAAAAAGACCGATGAAAACCTTCGAAAA</canonical>
            <polymorphic>TCAACTCAAAGAGATTCTGCAAAATGCATACAAAAATAAACTTGGTTAAAGAAAGTGGGTCACACAAAAAAAGATAGAAAGAAGATAGTGGATGTGTCATCATAAAACAGGAAATAAAATTGTGCGGACCTTTGAGTTTACGTTTTTCCCCTTCTACTTTTGTTCGGTTTTCACCTACCTCCACTCCGGTTTTCTTTGAGTTACCACTGCTTTTTTTGTTCCTATTCTCGACGTTATCAATTATATATAAAGGTTTTCTTTTTCAACTTCCTTCTGGCTCAGTTTCAGAAGATCAGTCTCGGAGTCAGTATTACTCTAGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAATAATTTTGGAGTAATTTGGGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGMCTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGTTCTATTAGAGTGTTTATGGTATGTTTTGCAATCAGTCTCTGGCCATTTTTTTTTTCGATTTTCCGATGAGCCCCTTAAATGTTTTACTTTTTTCATATAAATCGGAAAAATGACATGGAAAGCAAAACTTTTTTTTCGATTTTTCAACAATTTTCATCGGTTTTGTACATTTTTTTCATACAAAAATTCGGAAAACCGCAAAAAGACCGATGAAAACCTTCGAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTACTGAGCAAATCAGAGGT</pcr_primer_p1>
		<pcr_primer_p2>CAGAGACTGATTGCAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>430</pcr_amplicon_size>
		<canonical_amplicon>GGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGTTCTATTAGAGTGTTTATGGTATGTTTTGCAATCAGTCTCTG</canonical_amplicon>
		<polymorphic_amplicon>GGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGMCTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGTTCTATTAGAGTGTTTATGGTATGTTTTGCAATCAGTCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39798</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>160960</contig_pos>
        <strand></strand>
        <context>gmcttgcacc[C/G]ccCACTGTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>CCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACC</left_flank>
        <right_flank>CCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCC</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAGATTCTGCAAAATGCATACAAAAATAAACTTGGTTAAAGAAAGTGGGTCACACAAAAAAAGATAGAAAGAAGATAGTGGATGTGTCATCATAAAACAGGAAATAAAATTGTGCGGACCTTTGAGTTTACGTTTTTCCCCTTCTACTTTTGTTCGGTTTTCACCTACCTCCACTCCGGTTTTCTTTGAGTTACCACTGCTTTTTTTGTTCCTATTCTCGACGTTATCAATTATATATAAAGGTTTTCTTTTTCAACTTCCTTCTGGCTCAGTTTCAGAAGATCAGTCTCGGAGTCAGTATTACTCTAGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAATAATTTTGGAGTAATTTGGGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGTTCTATTAGAGTGTTTATGGTATGTTTTGCAATCAGTCTCTGGCCATTTTTTTTTTCGATTTTCCGATGAGCCCCTTAAATGTTTTACTTTTTTCATATAAATCGGAAAAATGACATGGAAAGCAAAACTTTTTTTTCGATTTTTCAACAATTTTCATCGGTTTTGTACATTTTTTTCATACAAAAATTCGGAAAACCGCAAAAAGACCGATGAAAACCTTCGAAAAACAGATAAA</canonical>
            <polymorphic>AGAGATTCTGCAAAATGCATACAAAAATAAACTTGGTTAAAGAAAGTGGGTCACACAAAAAAAGATAGAAAGAAGATAGTGGATGTGTCATCATAAAACAGGAAATAAAATTGTGCGGACCTTTGAGTTTACGTTTTTCCCCTTCTACTTTTGTTCGGTTTTCACCTACCTCCACTCCGGTTTTCTTTGAGTTACCACTGCTTTTTTTGTTCCTATTCTCGACGTTATCAATTATATATAAAGGTTTTCTTTTTCAACTTCCTTCTGGCTCAGTTTCAGAAGATCAGTCTCGGAGTCAGTATTACTCTAGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAATAATTTTGGAGTAATTTGGGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCSCCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGTTCTATTAGAGTGTTTATGGTATGTTTTGCAATCAGTCTCTGGCCATTTTTTTTTTCGATTTTCCGATGAGCCCCTTAAATGTTTTACTTTTTTCATATAAATCGGAAAAATGACATGGAAAGCAAAACTTTTTTTTCGATTTTTCAACAATTTTCATCGGTTTTGTACATTTTTTTCATACAAAAATTCGGAAAACCGCAAAAAGACCGATGAAAACCTTCGAAAAACAGATAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GGTACTGAGCAAATCAGAGGT</pcr_primer_p1>
		<pcr_primer_p2>CAGAGACTGATTGCAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>430</pcr_amplicon_size>
		<canonical_amplicon>GGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGTTCTATTAGAGTGTTTATGGTATGTTTTGCAATCAGTCTCTG</canonical_amplicon>
		<polymorphic_amplicon>GGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCSCCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGTTCTATTAGAGTGTTTATGGTATGTTTTGCAATCAGTCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39799</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>161095</contig_pos>
        <strand></strand>
        <context>ttcctgcaaa[A/T]gatatttaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAA</left_flank>
        <right_flank>GATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTCCCCTTCTACTTTTGTTCGGTTTTCACCTACCTCCACTCCGGTTTTCTTTGAGTTACCACTGCTTTTTTTGTTCCTATTCTCGACGTTATCAATTATATATAAAGGTTTTCTTTTTCAACTTCCTTCTGGCTCAGTTTCAGAAGATCAGTCTCGGAGTCAGTATTACTCTAGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAATAATTTTGGAGTAATTTGGGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGTTCTATTAGAGTGTTTATGGTATGTTTTGCAATCAGTCTCTGGCCATTTTTTTTTTCGATTTTCCGATGAGCCCCTTAAATGTTTTACTTTTTTCATATAAATCGGAAAAATGACATGGAAAGCAAAACTTTTTTTTCGATTTTTCAACAATTTTCATCGGTTTTGTACATTTTTTTCATACAAAAATTCGGAAAACCGCAAAAAGACCGATGAAAACCTTCGAAAAACAGATAAAATTCGTCGAAAACTCAAAAAATAGGCCAGAAAATAATTACGAGGGCACATGTTCCTTTAAATGCACTTTTAAGGATTTTGACGCCGGACCTACGCTCCGCCCACTTTTGAATTTCGCTTTTTTAACAGGATCCTT</canonical>
            <polymorphic>TTTCCCCTTCTACTTTTGTTCGGTTTTCACCTACCTCCACTCCGGTTTTCTTTGAGTTACCACTGCTTTTTTTGTTCCTATTCTCGACGTTATCAATTATATATAAAGGTTTTCTTTTTCAACTTCCTTCTGGCTCAGTTTCAGAAGATCAGTCTCGGAGTCAGTATTACTCTAGGCTAATTTCGTTGTGACCGAAAATCGTCAAAAAATTCGGAGGGTACAATAATTTTGGAGTAATTTGGGTACTGAGCAAATCAGAGGTACAAAGTCCTCAATTAAAGAGTAAAAATACCTGAAAAGGTCGAATTTTAAACCCCAGAACTATGGATTTTGCACCTCTGAATCACTTTGGAAGACTTGCACCCCCCACTGTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAWGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGTTCTATTAGAGTGTTTATGGTATGTTTTGCAATCAGTCTCTGGCCATTTTTTTTTTCGATTTTCCGATGAGCCCCTTAAATGTTTTACTTTTTTCATATAAATCGGAAAAATGACATGGAAAGCAAAACTTTTTTTTCGATTTTTCAACAATTTTCATCGGTTTTGTACATTTTTTTCATACAAAAATTCGGAAAACCGCAAAAAGACCGATGAAAACCTTCGAAAAACAGATAAAATTCGTCGAAAACTCAAAAAATAGGCCAGAAAATAATTACGAGGGCACATGTTCCTTTAAATGCACTTTTAAGGATTTTGACGCCGGACCTACGCTCCGCCCACTTTTGAATTTCGCTTTTTTAACAGGATCCTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTTGTACAATCCGAATTATGTG</pcr_primer_p1>
		<pcr_primer_p2>CAGAGACTGATTGCAAAACAT</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>GTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAAGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGTTCTATTAGAGTGTTTATGGTATGTTTTGCAATCAGTCTCTG</canonical_amplicon>
		<polymorphic_amplicon>GTTGTACAATCCGAATTATGTGCCCCGAAAATTCGATGAAATCCTTAAAGGCGCACATACCGTAATCATTCTAATAGACGGCCACCCAAACCGTCCGATTTGAGCTCATGTATCTCATTTCCTGCAAAWGATATTTAAAAAACTGCTAACTGGTAAAATGTTGCTGATATTATGATGAACATTTTCTTAGTTGACCACTTTTACACACCTTTCACAGAAAATGAGATAAATAATATCAAGTTGAATGTTTGGGTGGCGTTCTATTAGAGTGTTTATGGTATGTTTTGCAATCAGTCTCTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39800</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>220511</contig_pos>
        <strand>+</strand>
        <context>CAACGAGAAA[A/G]KTGGGATCCT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GCAGTGCTTCTGTCCAATTGCATAGCGCTTCGAGCGGGAACAACGAGAAA</left_flank>
        <right_flank>TTGGGATCCTTGGCCATGGTTGGAGTGACAATTAAAAGCTCTCCAGTTAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTGATTGTTAGACATTCCAGTGACAGTGACAGCTCCAGTTTGAATAGTCGCTGTGTCAACTGCGAAAGACGATTTACTTATATTTGAAAACAATCCTGGTGGCCTATTCTTACCATAACTATCTGAAACATTGAGCTTGAAACCTCCAACTCCTCGGAACCACACACTGCTTTGCGAGAATTGTATTGGATCGATCTGAGTGAAAAATGTGGATTGCATTGCTCCTCCTACAAAGTAACTGAGTGGATTCGAGAATATTCTTCGCTGTATAGTATCCAGATTTGTCACATCTTGATAGTTATCATTTGGCAAATAGCGATAGAAAGAGAGAGTGGTGCCCGGTGGTTGTGCGATGTTCTCAACACGGATATGATTAAAACCAGCGTAGTTTGGGACTCCATCTGTGTTCTGGCTGTGTGCTGCAAGGAACACAATTGTTGTATCCGTGGCAGTGCTTCTGTCCAATTGCATAGCGCTTCGAGCGGGAACAACGAGAAAGTTGGGATCCTTGGCCATGGTTGGAGTGACAATTAAAAGCTCTCCAGTTAGATTTTTGGTTAGACCTTCGGAGTTTGTTGTTGAAATGGTTAGATCACTATTGACTGTCCATCCTCTTGGCAAACCAGCGTCGTCGAAATAGTTCAATAGATTGAGGAGTCTGAAAATTGTATTTCAAATTTAGGAAGGAATCCGCAAATCGGCTAACGTTTTAGATGCTCCTTGAGTGGACAGGGTTATACTTCCAAGATAGGCGGCTTTGTCTCGAGAAGATAAATAGATTTTGGAACCATCCAGAACATCCTTTATCGGTGTTGCTACTGTGTTATTGAACGAGCTCAATTTATGGATAGTAGAACTAGCCGAAAAGACAGCAGGAATTAAAAGAAAAATCGAGAATAGTGTTCTTGTCATGATGTTTGTGGTGGAAGAAGTGACAGGCTAGGTGTGTCGGGGAAGACAGTCCTTTTAAGTGCTTTCTGTGCTGATATTAAAGAGTGT</canonical>
            <polymorphic>GCTGATTGTTAGACATTCCAGTGACAGTGACAGCTCCAGTTTGAATAGTCGCTGTGTCAACTGCGAAAGACGATTTACTTATATTTGAAAACAATCCTGGTGGCCTATTCTTACCATAACTATCTGAAACATTGAGCTTGAAACCTCCAACTCCTCGGAACCACACACTGCTTTGCGAGAATTGTATTGGATCGATCTGAGTGAAAAATGTGGATTGCATTGCTCCTCCTACAAAGTAACTGAGTGGATTCGAGAATATTCTTCGCTGTATAGTATCCAGATTTGTCACATCTTGATAGTTATCATTTGGCAAATAGCGATAGAAAGAGAGAGTGGTGCCCGGTGGTTGTGCGATGTTCTCAACACGGATATGATTAAAACCAGCGTAGTTTGGGACTCCATCTGTGTTCTGGCTGTGTGCTGCAAGGAACACAATTGTTGTATCCGTGGCAGTGCTTCTGTCCAATTGCATAGCGCTTCGAGCGGGAACAACGAGAAARTTGGGATCCTTGGCCATGGTTGGAGTGACAATTAAAAGCTCTCCAGTTAGATTTTTGGTTAGACCTTCGGAGTTTGTTGTTGAAATGGTTAGATCACTATTGACTGTCCATCCTCTTGGCAAACCAGCGTCGTCGAAATAGTTCAATAGATTGAGGAGTCTGAAAATTGTATTTCAAATTTAGGAAGGAATCCGCAAATCGGCTAACGTTTTAGATGCTCCTTGAGTGGACAGGGTTATACTTCCAAGATAGGCGGCTTTGTCTCGAGAAGATAAATAGATTTTGGAACCATCCAGAACATCCTTTATCGGTGTTGCTACTGTGTTATTGAACGAGCTCAATTTATGGATAGTAGAACTAGCCGAAAAGACAGCAGGAATTAAAAGAAAAATCGAGAATAGTGTTCTTGTCATGATGTTTGTGGTGGAAGAAGTGACAGGCTAGGTGTGTCGGGGAAGACAGTCCTTTTAAGTGCTTTCTGTGCTGATATTAAAGAGTGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGCGATAGAAAGAGAGAGTGG</pcr_primer_p1>
		<pcr_primer_p2>CTAACCAAAAATCTAACTGGAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATAGCGATAGAAAGAGAGAGTGGTGCCCGGTGGTTGTGCGATGTTCTCAACACGGATATGATTAAAACCAGCGTAGTTTGGGACTCCATCTGTGTTCTGGCTGTGTGCTGCAAGGAACACAATTGTTGTATCCGTGGCAGTGCTTCTGTCCAATTGCATAGCGCTTCGAGCGGGAACAACGAGAAAGTTGGGATCCTTGGCCATGGTTGGAGTGACAATTAAAAGCTCTCCAGTTAGATTTTTGGTTAG</canonical_amplicon>
		<polymorphic_amplicon>ATAGCGATAGAAAGAGAGAGTGGTGCCCGGTGGTTGTGCGATGTTCTCAACACGGATATGATTAAAACCAGCGTAGTTTGGGACTCCATCTGTGTTCTGGCTGTGTGCTGCAAGGAACACAATTGTTGTATCCGTGGCAGTGCTTCTGTCCAATTGCATAGCGCTTCGAGCGGGAACAACGAGAAARTTGGGATCCTTGGCCATGGTTGGAGTGACAATTAAAAGCTCTCCAGTTAGATTTTTGGTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39801</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>220512</contig_pos>
        <strand>+</strand>
        <context>AACGAGAAAR[G/T]TGGGATCCTT</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CAGTGCTTCTGTCCAATTGCATAGCGCTTCGAGCGGGAACAACGAGAAAG</left_flank>
        <right_flank>TGGGATCCTTGGCCATGGTTGGAGTGACAATTAAAAGCTCTCCAGTTAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTGATTGTTAGACATTCCAGTGACAGTGACAGCTCCAGTTTGAATAGTCGCTGTGTCAACTGCGAAAGACGATTTACTTATATTTGAAAACAATCCTGGTGGCCTATTCTTACCATAACTATCTGAAACATTGAGCTTGAAACCTCCAACTCCTCGGAACCACACACTGCTTTGCGAGAATTGTATTGGATCGATCTGAGTGAAAAATGTGGATTGCATTGCTCCTCCTACAAAGTAACTGAGTGGATTCGAGAATATTCTTCGCTGTATAGTATCCAGATTTGTCACATCTTGATAGTTATCATTTGGCAAATAGCGATAGAAAGAGAGAGTGGTGCCCGGTGGTTGTGCGATGTTCTCAACACGGATATGATTAAAACCAGCGTAGTTTGGGACTCCATCTGTGTTCTGGCTGTGTGCTGCAAGGAACACAATTGTTGTATCCGTGGCAGTGCTTCTGTCCAATTGCATAGCGCTTCGAGCGGGAACAACGAGAAAGTTGGGATCCTTGGCCATGGTTGGAGTGACAATTAAAAGCTCTCCAGTTAGATTTTTGGTTAGACCTTCGGAGTTTGTTGTTGAAATGGTTAGATCACTATTGACTGTCCATCCTCTTGGCAAACCAGCGTCGTCGAAATAGTTCAATAGATTGAGGAGTCTGAAAATTGTATTTCAAATTTAGGAAGGAATCCGCAAATCGGCTAACGTTTTAGATGCTCCTTGAGTGGACAGGGTTATACTTCCAAGATAGGCGGCTTTGTCTCGAGAAGATAAATAGATTTTGGAACCATCCAGAACATCCTTTATCGGTGTTGCTACTGTGTTATTGAACGAGCTCAATTTATGGATAGTAGAACTAGCCGAAAAGACAGCAGGAATTAAAAGAAAAATCGAGAATAGTGTTCTTGTCATGATGTTTGTGGTGGAAGAAGTGACAGGCTAGGTGTGTCGGGGAAGACAGTCCTTTTAAGTGCTTTCTGTGCTGATATTAAAGAGTGTT</canonical>
            <polymorphic>CTGATTGTTAGACATTCCAGTGACAGTGACAGCTCCAGTTTGAATAGTCGCTGTGTCAACTGCGAAAGACGATTTACTTATATTTGAAAACAATCCTGGTGGCCTATTCTTACCATAACTATCTGAAACATTGAGCTTGAAACCTCCAACTCCTCGGAACCACACACTGCTTTGCGAGAATTGTATTGGATCGATCTGAGTGAAAAATGTGGATTGCATTGCTCCTCCTACAAAGTAACTGAGTGGATTCGAGAATATTCTTCGCTGTATAGTATCCAGATTTGTCACATCTTGATAGTTATCATTTGGCAAATAGCGATAGAAAGAGAGAGTGGTGCCCGGTGGTTGTGCGATGTTCTCAACACGGATATGATTAAAACCAGCGTAGTTTGGGACTCCATCTGTGTTCTGGCTGTGTGCTGCAAGGAACACAATTGTTGTATCCGTGGCAGTGCTTCTGTCCAATTGCATAGCGCTTCGAGCGGGAACAACGAGAAAGKTGGGATCCTTGGCCATGGTTGGAGTGACAATTAAAAGCTCTCCAGTTAGATTTTTGGTTAGACCTTCGGAGTTTGTTGTTGAAATGGTTAGATCACTATTGACTGTCCATCCTCTTGGCAAACCAGCGTCGTCGAAATAGTTCAATAGATTGAGGAGTCTGAAAATTGTATTTCAAATTTAGGAAGGAATCCGCAAATCGGCTAACGTTTTAGATGCTCCTTGAGTGGACAGGGTTATACTTCCAAGATAGGCGGCTTTGTCTCGAGAAGATAAATAGATTTTGGAACCATCCAGAACATCCTTTATCGGTGTTGCTACTGTGTTATTGAACGAGCTCAATTTATGGATAGTAGAACTAGCCGAAAAGACAGCAGGAATTAAAAGAAAAATCGAGAATAGTGTTCTTGTCATGATGTTTGTGGTGGAAGAAGTGACAGGCTAGGTGTGTCGGGGAAGACAGTCCTTTTAAGTGCTTTCTGTGCTGATATTAAAGAGTGTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATAGCGATAGAAAGAGAGAGTGG</pcr_primer_p1>
		<pcr_primer_p2>CTAACCAAAAATCTAACTGGAGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>ATAGCGATAGAAAGAGAGAGTGGTGCCCGGTGGTTGTGCGATGTTCTCAACACGGATATGATTAAAACCAGCGTAGTTTGGGACTCCATCTGTGTTCTGGCTGTGTGCTGCAAGGAACACAATTGTTGTATCCGTGGCAGTGCTTCTGTCCAATTGCATAGCGCTTCGAGCGGGAACAACGAGAAAGTTGGGATCCTTGGCCATGGTTGGAGTGACAATTAAAAGCTCTCCAGTTAGATTTTTGGTTAG</canonical_amplicon>
		<polymorphic_amplicon>ATAGCGATAGAAAGAGAGAGTGGTGCCCGGTGGTTGTGCGATGTTCTCAACACGGATATGATTAAAACCAGCGTAGTTTGGGACTCCATCTGTGTTCTGGCTGTGTGCTGCAAGGAACACAATTGTTGTATCCGTGGCAGTGCTTCTGTCCAATTGCATAGCGCTTCGAGCGGGAACAACGAGAAAGKTGGGATCCTTGGCCATGGTTGGAGTGACAATTAAAAGCTCTCCAGTTAGATTTTTGGTTAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39802</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>226682</contig_pos>
        <strand></strand>
        <context>tatgtcgttg[T/G]gggaccttcg</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>GCTGAAAATTTCCGGAGAATAAAACTTTTTAGGTACGGTATATGTCGTTG</left_flank>
        <right_flank>GGGACCTTCGGCCACGCGATTTTCTGAACCTAATGCTAGAAAGGAAACCA</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCGCTAATTTAAGCCAATTTCAAGCTGCTGCTGATAACACAGGAGTCACAATTGTAATGATGTTCTGTGTCTTAATTCCTGACCATGACGAGGAGTGGAATCAACAGGAACCGAGAGTCGATGCTAGAAATAGAAGAGCAAATTGTTTCGAGAGTTTCAAATAAAAAGAAAAAACGAATTAAAGCTAGAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCTGGCGGTATTTGTAGTTGTAAACACTGTAGTAGTAGAGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAGTGGGCACCAATCCTCGAGTGAATCCATAATATTGACAGTAGAAAGCGCCAGGAATCATATCTGCTGAGTTGGTTACCAGTTTCGAAGCTTGCATATAAGTGGTCAGCAAGGCATGCTTCACAAAAGTGTCTTCGTTGTAGCTGAAAATTTCCGGAGAATAAAACTTTTTAGGTACGGTATATGTCGTTGTGGGACCTTCGGCCACGCGATTTTCTGAACCTAATGCTAGAAAGGAAACCAAATTATTTTGGGAGCATAAATAGGTCAACGTCGTTCCTTAAGTATAACGGTAGCGATAAGAAATGACTAGATGATATTTTTTAGTACTGAAAGTGTCTTGCAGTGACTCAAACATCCAGAAATTTCAATTTTTGTTTCTCTGTTAACTGATGACCTAGTTCTGGAACCAGCCTGAATGTAACTTTGAAAAAAGACTCAAGATAGTTTGAAATGTGAAACATCAGAGCACATTACAGATTGCGATGACAGAAGACGGGTCCAGATCGGTTAACCACTACCCTACAGTTGACGAGATTCTCAATGTCGAGTCACAACAAAGATGCAGTGTATGTGGACGTGTGTTCCAGAATTCGTCAGCTTGTCGATTCCACGAATTGAAGATTCACTCGAAAACGGATGCTGCTGGCCCGAATGAGGCGCGGCTTTTGAAACGAACTTCTGATGAACAAC</canonical>
            <polymorphic>TCGCTAATTTAAGCCAATTTCAAGCTGCTGCTGATAACACAGGAGTCACAATTGTAATGATGTTCTGTGTCTTAATTCCTGACCATGACGAGGAGTGGAATCAACAGGAACCGAGAGTCGATGCTAGAAATAGAAGAGCAAATTGTTTCGAGAGTTTCAAATAAAAAGAAAAAACGAATTAAAGCTAGAGCGAAAATCATAATAATCAAGTTAAAAATATTTCGAGATCTGGCGGTATTTGTAGTTGTAAACACTGTAGTAGTAGAGACGCTACTCGTGGATTGTGTTGTTGTCGTTGTTGTTGATGTAGTGGGCACCAATCCTCGAGTGAATCCATAATATTGACAGTAGAAAGCGCCAGGAATCATATCTGCTGAGTTGGTTACCAGTTTCGAAGCTTGCATATAAGTGGTCAGCAAGGCATGCTTCACAAAAGTGTCTTCGTTGTAGCTGAAAATTTCCGGAGAATAAAACTTTTTAGGTACGGTATATGTCGTTGKGGGACCTTCGGCCACGCGATTTTCTGAACCTAATGCTAGAAAGGAAACCAAATTATTTTGGGAGCATAAATAGGTCAACGTCGTTCCTTAAGTATAACGGTAGCGATAAGAAATGACTAGATGATATTTTTTAGTACTGAAAGTGTCTTGCAGTGACTCAAACATCCAGAAATTTCAATTTTTGTTTCTCTGTTAACTGATGACCTAGTTCTGGAACCAGCCTGAATGTAACTTTGAAAAAAGACTCAAGATAGTTTGAAATGTGAAACATCAGAGCACATTACAGATTGCGATGACAGAAGACGGGTCCAGATCGGTTAACCACTACCCTACAGTTGACGAGATTCTCAATGTCGAGTCACAACAAAGATGCAGTGTATGTGGACGTGTGTTCCAGAATTCGTCAGCTTGTCGATTCCACGAATTGAAGATTCACTCGAAAACGGATGCTGCTGGCCCGAATGAGGCGCGGCTTTTGAAACGAACTTCTGATGAACAAC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>156 131 110 81 65 63 46 39 37 29 28 26 26 21 19 16 15 14 13 13 10 9 8 7 6 6 4 2</canonical_bands>
                <polymorphic_bands>156 131 110 81 76 65 46 39 37 29 28 26 26 21 19 16 15 14 13 10 9 8 7 6 6 4 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATCCTCGAGTGAATCCATAATA</pcr_primer_p1>
		<pcr_primer_p2>CAAAATAATTTGGTTTCCTTTCT</pcr_primer_p2>
		<pcr_amplicon_size>241</pcr_amplicon_size>
		<canonical_amplicon>ATCCTCGAGTGAATCCATAATATTGACAGTAGAAAGCGCCAGGAATCATATCTGCTGAGTTGGTTACCAGTTTCGAAGCTTGCATATAAGTGGTCAGCAAGGCATGCTTCACAAAAGTGTCTTCGTTGTAGCTGAAAATTTCCGGAGAATAAAACTTTTTAGGTACGGTATATGTCGTTGTGGGACCTTCGGCCACGCGATTTTCTGAACCTAATGCTAGAAAGGAAACCAAATTATTTTG</canonical_amplicon>
		<polymorphic_amplicon>ATCCTCGAGTGAATCCATAATATTGACAGTAGAAAGCGCCAGGAATCATATCTGCTGAGTTGGTTACCAGTTTCGAAGCTTGCATATAAGTGGTCAGCAAGGCATGCTTCACAAAAGTGTCTTCGTTGTAGCTGAAAATTTCCGGAGAATAAAACTTTTTAGGTACGGTATATGTCGTTGKGGGACCTTCGGCCACGCGATTTTCTGAACCTAATGCTAGAAAGGAAACCAAATTATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39803</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>229744</contig_pos>
        <strand>+</strand>
        <context>ATACGGATAA[C/T]AACTTCCCAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GGGTTAATGAACAGGAATTGAATTTAATCTATTCTTACAGATACGGATAA</left_flank>
        <right_flank>AACTTCCCAAAAGCGAAGAAGCTCAAAAAGCACGAATCCGCAACAAGAAC</right_flank>
        <qual_score>131</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CATTGGGCACGATATCTAAGCGATTGATCTGTAAAAGAATAAGTCCCCTCTGTAGTCACAAGGGGTACCCAGGTTGTTTGAAAGAAACTGCGAAATTTGGCTGCATTGTGATGACCTTGTCGAGATTTTCAATAAAATAATGAATAGGGCATACACCTCAACACCTGTAATAGAAGGGCGCCCACACAATTTCAAATTCGAGCTAATTTATCCCCTATCCATGTCTACCCGGGCCACTCTATCCTTGCTCTTTGACCTCAAGTATCTCAATTTCTAGAAGACATAACAAAGATGTGTCAACTGGTAATATATTTGTGAAATTATGATAAACAATTTATCAGTTGACAACTTTTTGATATCTTACATAGGAACCTAGATAAATTGGCTCAAAGTTAAAAGTTAGAGACCCTTCTATTACAGGTTTTATAAATTCAAATAAAATGATAATTGGGTTAATGAACAGGAATTGAATTTAATCTATTCTTACAGATACGGATAACAACTTCCCAAAAGCGAAGAAGCTCAAAAAGCACGAATCCGCAACAAGAACATTTTTGGAAGAGGCTCTAGGATCAAGCTCTATGGTCCCGATTATCTTACTTGTGCCACCCGAAGACGTGCAGAAGGTTGTAGAATCCGTTCAGAATAACTTCAAAGCCACTCTGGTCGACAATTTCACGGAGGAGCCAGAATCTGGGAATTTCGCAGAAGTCGCAACTCAAGTGCAGATGCCTTTTAATGTACAGAATCAGGATGTTCCAATGTATGCAACTGCTTCCACGTCGACTTCGTTCGCCGCTCAGTACGATGAGCAGGAAGTGACGTTTTGCGAGCGGGGAACGATGATGACCGAGGAGGAGCCGTTGCGATACTTTAGTCCGCCGTATGGAGCGGAATTTGGGGATTTGAATCCGCATGAAAGGTGAGGTAGAAGACTAATCAAGATGCCGTAAAACCTGCGATAGAATGACCCGCACACTGTGAAGTTTGAGCTCAATTA</canonical>
            <polymorphic>CATTGGGCACGATATCTAAGCGATTGATCTGTAAAAGAATAAGTCCCCTCTGTAGTCACAAGGGGTACCCAGGTTGTTTGAAAGAAACTGCGAAATTTGGCTGCATTGTGATGACCTTGTCGAGATTTTCAATAAAATAATGAATAGGGCATACACCTCAACACCTGTAATAGAAGGGCGCCCACACAATTTCAAATTCGAGCTAATTTATCCCCTATCCATGTCTACCCGGGCCACTCTATCCTTGCTCTTTGACCTCAAGTATCTCAATTTCTAGAAGACATAACAAAGATGTGTCAACTGGTAATATATTTGTGAAATTATGATAAACAATTTATCAGTTGACAACTTTTTGATATCTTACATAGGAACCTAGATAAATTGGCTCAAAGTTAAAAGTTAGAGACCCTTCTATTACAGGTTTTATAAATTCAAATAAAATGATAATTGGGTTAATGAACAGGAATTGAATTTAATCTATTCTTACAGATACGGATAAYAACTTCCCAAAAGCGAAGAAGCTCAAAAAGCACGAATCCGCAACAAGAACATTTTTGGAAGAGGCTCTAGGATCAAGCTCTATGGTCCCGATTATCTTACTTGTGCCACCCGAAGACGTGCAGAAGGTTGTAGAATCCGTTCAGAATAACTTCAAAGCCACTCTGGTCGACAATTTCACGGAGGAGCCAGAATCTGGGAATTTCGCAGAAGTCGCAACTCAAGTGCAGATGCCTTTTAATGTACAGAATCAGGATGTTCCAATGTATGCAACTGCTTCCACGTCGACTTCGTTCGCCGCTCAGTACGATGAGCAGGAAGTGACGTTTTGCGAGCGGGGAACGATGATGACCGAGGAGGAGCCGTTGCGATACTTTAGTCCGCCGTATGGAGCGGAATTTGGGGATTTGAATCCGCATGAAAGGTGAGGTAGAAGACTAATCAAGATGCCGTAAAACCTGCGATAGAATGACCCGCACACTGTGAAGTTTGAGCTCAATTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAAATAAAATGATAATTGGGTTA</pcr_primer_p1>
		<pcr_primer_p2>GTGAAATTGTCGACCAGAGT</pcr_primer_p2>
		<pcr_amplicon_size>248</pcr_amplicon_size>
		<canonical_amplicon>TCAAATAAAATGATAATTGGGTTAATGAACAGGAATTGAATTTAATCTATTCTTACAGATACGGATAACAACTTCCCAAAAGCGAAGAAGCTCAAAAAGCACGAATCCGCAACAAGAACATTTTTGGAAGAGGCTCTAGGATCAAGCTCTATGGTCCCGATTATCTTACTTGTGCCACCCGAAGACGTGCAGAAGGTTGTAGAATCCGTTCAGAATAACTTCAAAGCCACTCTGGTCGACAATTTCAC</canonical_amplicon>
		<polymorphic_amplicon>TCAAATAAAATGATAATTGGGTTAATGAACAGGAATTGAATTTAATCTATTCTTACAGATACGGATAAYAACTTCCCAAAAGCGAAGAAGCTCAAAAAGCACGAATCCGCAACAAGAACATTTTTGGAAGAGGCTCTAGGATCAAGCTCTATGGTCCCGATTATCTTACTTGTGCCACCCGAAGACGTGCAGAAGGTTGTAGAATCCGTTCAGAATAACTTCAAAGCCACTCTGGTCGACAATTTCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39804</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>230210</contig_pos>
        <strand></strand>
        <context>cctgcgatag[A/T]atgacccgca</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATGAAAGGTGAGGTAGAAGACTAATCAAGATGCCGTAAAACCTGCGATAG</left_flank>
        <right_flank>ATGACCCGCACACTGTGAAGTTTGAGCTCAATTATCTCGGCTGCCATAAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGAATTTAATCTATTCTTACAGATACGGATAACAACTTCCCAAAAGCGAAGAAGCTCAAAAAGCACGAATCCGCAACAAGAACATTTTTGGAAGAGGCTCTAGGATCAAGCTCTATGGTCCCGATTATCTTACTTGTGCCACCCGAAGACGTGCAGAAGGTTGTAGAATCCGTTCAGAATAACTTCAAAGCCACTCTGGTCGACAATTTCACGGAGGAGCCAGAATCTGGGAATTTCGCAGAAGTCGCAACTCAAGTGCAGATGCCTTTTAATGTACAGAATCAGGATGTTCCAATGTATGCAACTGCTTCCACGTCGACTTCGTTCGCCGCTCAGTACGATGAGCAGGAAGTGACGTTTTGCGAGCGGGGAACGATGATGACCGAGGAGGAGCCGTTGCGATACTTTAGTCCGCCGTATGGAGCGGAATTTGGGGATTTGAATCCGCATGAAAGGTGAGGTAGAAGACTAATCAAGATGCCGTAAAACCTGCGATAGAATGACCCGCACACTGTGAAGTTTGAGCTCAATTATCTCGGCTGCCATAAGAGATATCAAAAATGTGTCAACTGATAAAATGTGATAAAATGTTTGGGACATTATGATAAGCAATTTATCAGTTGACTACTTTTTCATATCTTTTACAGAAACGGAAATAAATTGTCTCAAAGATAAAGTCAAGGGGCATTTCTATTACAGGTTTTACGGTAGTTTTGTCAAAAAAAATATTTTAGTGGACCTCAACAATTCGACTACTCTTCACAACCATCTACATCCCAACCTCAAACTAGGAACCGTGGAACGATGTTTGAAAAGTAACCACCTTCCTCAATTACCGCATTTCTCAATCTTTCTCTCTTCCAGCGTAACCACTTGCAATACGGGCACTTCGATGATGGGCGAACAGTTTCCAGACTGCACACGCCACATATACACCCAGACTCCAAACTATCCGATGGGCTCCTCAGATCCATCCAACTGGTCGTGGTCCAATACCTG</canonical>
            <polymorphic>TTGAATTTAATCTATTCTTACAGATACGGATAACAACTTCCCAAAAGCGAAGAAGCTCAAAAAGCACGAATCCGCAACAAGAACATTTTTGGAAGAGGCTCTAGGATCAAGCTCTATGGTCCCGATTATCTTACTTGTGCCACCCGAAGACGTGCAGAAGGTTGTAGAATCCGTTCAGAATAACTTCAAAGCCACTCTGGTCGACAATTTCACGGAGGAGCCAGAATCTGGGAATTTCGCAGAAGTCGCAACTCAAGTGCAGATGCCTTTTAATGTACAGAATCAGGATGTTCCAATGTATGCAACTGCTTCCACGTCGACTTCGTTCGCCGCTCAGTACGATGAGCAGGAAGTGACGTTTTGCGAGCGGGGAACGATGATGACCGAGGAGGAGCCGTTGCGATACTTTAGTCCGCCGTATGGAGCGGAATTTGGGGATTTGAATCCGCATGAAAGGTGAGGTAGAAGACTAATCAAGATGCCGTAAAACCTGCGATAGWATGACCCGCACACTGTGAAGTTTGAGCTCAATTATCTCGGCTGCCATAAGAGATATCAAAAATGTGTCAACTGATAAAATGTGATAAAATGTTTGGGACATTATGATAAGCAATTTATCAGTTGACTACTTTTTCATATCTTTTACAGAAACGGAAATAAATTGTCTCAAAGATAAAGTCAAGGGGCATTTCTATTACAGGTTTTACGGTAGTTTTGTCAAAAAAAATATTTTAGTGGACCTCAACAATTCGACTACTCTTCACAACCATCTACATCCCAACCTCAAACTAGGAACCGTGGAACGATGTTTGAAAAGTAACCACCTTCCTCAATTACCGCATTTCTCAATCTTTCTCTCTTCCAGCGTAACCACTTGCAATACGGGCACTTCGATGATGGGCGAACAGTTTCCAGACTGCACACGCCACATATACACCCAGACTCCAAACTATCCGATGGGCTCCTCAGATCCATCCAACTGGTCGTGGTCCAATACCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CATGAAAGGTGAGGTAGAAGAC</pcr_primer_p1>
		<pcr_primer_p2>GAATTGTTGAGGTCCACTAAA</pcr_primer_p2>
		<pcr_amplicon_size>303</pcr_amplicon_size>
		<canonical_amplicon>CATGAAAGGTGAGGTAGAAGACTAATCAAGATGCCGTAAAACCTGCGATAGAATGACCCGCACACTGTGAAGTTTGAGCTCAATTATCTCGGCTGCCATAAGAGATATCAAAAATGTGTCAACTGATAAAATGTGATAAAATGTTTGGGACATTATGATAAGCAATTTATCAGTTGACTACTTTTTCATATCTTTTACAGAAACGGAAATAAATTGTCTCAAAGATAAAGTCAAGGGGCATTTCTATTACAGGTTTTACGGTAGTTTTGTCAAAAAAAATATTTTAGTGGACCTCAACAATTC</canonical_amplicon>
		<polymorphic_amplicon>CATGAAAGGTGAGGTAGAAGACTAATCAAGATGCCGTAAAACCTGCGATAGWATGACCCGCACACTGTGAAGTTTGAGCTCAATTATCTCGGCTGCCATAAGAGATATCAAAAATGTGTCAACTGATAAAATGTGATAAAATGTTTGGGACATTATGATAAGCAATTTATCAGTTGACTACTTTTTCATATCTTTTACAGAAACGGAAATAAATTGTCTCAAAGATAAAGTCAAGGGGCATTTCTATTACAGGTTTTACGGTAGTTTTGTCAAAAAAAATATTTTAGTGGACCTCAACAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39805</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>230252</contig_pos>
        <strand></strand>
        <context>ttatctcggc[T/G]gccataagag</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>TGCGATAGAATGACCCGCACACTGTGAAGTTTGAGCTCAATTATCTCGGC</left_flank>
        <right_flank>GCCATAAGAGATATCAAAAATGTGTCAACTGATAAAATGTGATAAAATGT</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAAAGCGAAGAAGCTCAAAAAGCACGAATCCGCAACAAGAACATTTTTGGAAGAGGCTCTAGGATCAAGCTCTATGGTCCCGATTATCTTACTTGTGCCACCCGAAGACGTGCAGAAGGTTGTAGAATCCGTTCAGAATAACTTCAAAGCCACTCTGGTCGACAATTTCACGGAGGAGCCAGAATCTGGGAATTTCGCAGAAGTCGCAACTCAAGTGCAGATGCCTTTTAATGTACAGAATCAGGATGTTCCAATGTATGCAACTGCTTCCACGTCGACTTCGTTCGCCGCTCAGTACGATGAGCAGGAAGTGACGTTTTGCGAGCGGGGAACGATGATGACCGAGGAGGAGCCGTTGCGATACTTTAGTCCGCCGTATGGAGCGGAATTTGGGGATTTGAATCCGCATGAAAGGTGAGGTAGAAGACTAATCAAGATGCCGTAAAACCTGCGATAGAATGACCCGCACACTGTGAAGTTTGAGCTCAATTATCTCGGCTGCCATAAGAGATATCAAAAATGTGTCAACTGATAAAATGTGATAAAATGTTTGGGACATTATGATAAGCAATTTATCAGTTGACTACTTTTTCATATCTTTTACAGAAACGGAAATAAATTGTCTCAAAGATAAAGTCAAGGGGCATTTCTATTACAGGTTTTACGGTAGTTTTGTCAAAAAAAATATTTTAGTGGACCTCAACAATTCGACTACTCTTCACAACCATCTACATCCCAACCTCAAACTAGGAACCGTGGAACGATGTTTGAAAAGTAACCACCTTCCTCAATTACCGCATTTCTCAATCTTTCTCTCTTCCAGCGTAACCACTTGCAATACGGGCACTTCGATGATGGGCGAACAGTTTCCAGACTGCACACGCCACATATACACCCAGACTCCAAACTATCCGATGGGCTCCTCAGATCCATCCAACTGGTCGTGGTCCAATACCTGACAACTGACTTTTTGCTCTCTTTTCCACCCCCTCCTATTTCA</canonical>
            <polymorphic>AAAAGCGAAGAAGCTCAAAAAGCACGAATCCGCAACAAGAACATTTTTGGAAGAGGCTCTAGGATCAAGCTCTATGGTCCCGATTATCTTACTTGTGCCACCCGAAGACGTGCAGAAGGTTGTAGAATCCGTTCAGAATAACTTCAAAGCCACTCTGGTCGACAATTTCACGGAGGAGCCAGAATCTGGGAATTTCGCAGAAGTCGCAACTCAAGTGCAGATGCCTTTTAATGTACAGAATCAGGATGTTCCAATGTATGCAACTGCTTCCACGTCGACTTCGTTCGCCGCTCAGTACGATGAGCAGGAAGTGACGTTTTGCGAGCGGGGAACGATGATGACCGAGGAGGAGCCGTTGCGATACTTTAGTCCGCCGTATGGAGCGGAATTTGGGGATTTGAATCCGCATGAAAGGTGAGGTAGAAGACTAATCAAGATGCCGTAAAACCTGCGATAGAATGACCCGCACACTGTGAAGTTTGAGCTCAATTATCTCGGCKGCCATAAGAGATATCAAAAATGTGTCAACTGATAAAATGTGATAAAATGTTTGGGACATTATGATAAGCAATTTATCAGTTGACTACTTTTTCATATCTTTTACAGAAACGGAAATAAATTGTCTCAAAGATAAAGTCAAGGGGCATTTCTATTACAGGTTTTACGGTAGTTTTGTCAAAAAAAATATTTTAGTGGACCTCAACAATTCGACTACTCTTCACAACCATCTACATCCCAACCTCAAACTAGGAACCGTGGAACGATGTTTGAAAAGTAACCACCTTCCTCAATTACCGCATTTCTCAATCTTTCTCTCTTCCAGCGTAACCACTTGCAATACGGGCACTTCGATGATGGGCGAACAGTTTCCAGACTGCACACGCCACATATACACCCAGACTCCAAACTATCCGATGGGCTCCTCAGATCCATCCAACTGGTCGTGGTCCAATACCTGACAACTGACTTTTTGCTCTCTTTTCCACCCCCTCCTATTTCA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>421 174 132 81 80 43 29 14 13 13</canonical_bands>
                <polymorphic_bands>435 174 132 81 80 43 29 13 13</polymorphic_bands>
            </assay>
            <assay>
                <site>GCWGC</site>
                <isoschizomers>
                    <enzyme>TseI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAGGTAGAAGACTAATCAAGATG</pcr_primer_p1>
		<pcr_primer_p2>GAATTGTTGAGGTCCACTAAA</pcr_primer_p2>
		<pcr_amplicon_size>294</pcr_amplicon_size>
		<canonical_amplicon>TGAGGTAGAAGACTAATCAAGATGCCGTAAAACCTGCGATAGAATGACCCGCACACTGTGAAGTTTGAGCTCAATTATCTCGGCTGCCATAAGAGATATCAAAAATGTGTCAACTGATAAAATGTGATAAAATGTTTGGGACATTATGATAAGCAATTTATCAGTTGACTACTTTTTCATATCTTTTACAGAAACGGAAATAAATTGTCTCAAAGATAAAGTCAAGGGGCATTTCTATTACAGGTTTTACGGTAGTTTTGTCAAAAAAAATATTTTAGTGGACCTCAACAATTC</canonical_amplicon>
		<polymorphic_amplicon>TGAGGTAGAAGACTAATCAAGATGCCGTAAAACCTGCGATAGAATGACCCGCACACTGTGAAGTTTGAGCTCAATTATCTCGGCKGCCATAAGAGATATCAAAAATGTGTCAACTGATAAAATGTGATAAAATGTTTGGGACATTATGATAAGCAATTTATCAGTTGACTACTTTTTCATATCTTTTACAGAAACGGAAATAAATTGTCTCAAAGATAAAGTCAAGGGGCATTTCTATTACAGGTTTTACGGTAGTTTTGTCAAAAAAAATATTTTAGTGGACCTCAACAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39806</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>230942</contig_pos>
        <strand></strand>
        <context>TTCTTCTACT[T/A]CTTCTTCTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>T/A</alleles>
        <left_flank>TTTTCCAAAACTTGTCACACTGCTCCCTCATAAAACGTTCTTCTTCTACT</left_flank>
        <right_flank>CTTCTTCTCATTCCCAAATTCATTTGTGTGATATCATTTGTAAAACAAAC</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAGTGGACCTCAACAATTCGACTACTCTTCACAACCATCTACATCCCAACCTCAAACTAGGAACCGTGGAACGATGTTTGAAAAGTAACCACCTTCCTCAATTACCGCATTTCTCAATCTTTCTCTCTTCCAGCGTAACCACTTGCAATACGGGCACTTCGATGATGGGCGAACAGTTTCCAGACTGCACACGCCACATATACACCCAGACTCCAAACTATCCGATGGGCTCCTCAGATCCATCCAACTGGTCGTGGTCCAATACCTGACAACTGACTTTTTGCTCTCTTTTCCACCCCCTCCTATTTCAACCAACTTGTCTTTCCTCATATTTTGCTTTATTGTTTTCATCTAATCATGCAGAAATCCATTAAGGATTTTCCCTCTTCTTCCCTTGCCCCAACTGCAAATCATGTAGAAATATGTTAGTTTTCATGTTCTGTATTTTTTTTTCCAAAACTTGTCACACTGCTCCCTCATAAAACGTTCTTCTTCTACTTCTTCTTCTCATTCCCAAATTCATTTGTGTGATATCATTTGTAAAACAAACTGCCCCCTCGTTTTTATTGCTTACAAATTGTGCTTCTGCCAGAAGAGTTGTTGCCATTTTAGGAGCGGCTCGATGAGATTAGTGGGACAGATAAAAGTTGGGGCCTCTGAGGCAAAGCCTCCGTTTTTTCGTAAGTTTGTAGACTTCCGTGTCTCTTTGTTTGTGCTCTCCCGGGCGTCTCCAAACTAATAAGAATGATTCTGGAAGTGTATAGAATTCGAAACACACAAATTTGAATATTGTTTGGTGGGAGAGACACACAATGACGTCAGTGTGTGATTTTGGAGGAAGTTTTGTAGCAATATGTATAATTAGTAGACAAAGAAATTATAAGAATCGGCTGGAAGCATGAATATCAAAAGAGCAAGATTTGTCTCAAAGAACACAGTGGTCTTACATTTTTGTCTTAAAGGCGCAATAGAGAACTACCGTGTCTTATTTTGACTTTAA</canonical>
            <polymorphic>TAGTGGACCTCAACAATTCGACTACTCTTCACAACCATCTACATCCCAACCTCAAACTAGGAACCGTGGAACGATGTTTGAAAAGTAACCACCTTCCTCAATTACCGCATTTCTCAATCTTTCTCTCTTCCAGCGTAACCACTTGCAATACGGGCACTTCGATGATGGGCGAACAGTTTCCAGACTGCACACGCCACATATACACCCAGACTCCAAACTATCCGATGGGCTCCTCAGATCCATCCAACTGGTCGTGGTCCAATACCTGACAACTGACTTTTTGCTCTCTTTTCCACCCCCTCCTATTTCAACCAACTTGTCTTTCCTCATATTTTGCTTTATTGTTTTCATCTAATCATGCAGAAATCCATTAAGGATTTTCCCTCTTCTTCCCTTGCCCCAACTGCAAATCATGTAGAAATATGTTAGTTTTCATGTTCTGTATTTTTTTTTCCAAAACTTGTCACACTGCTCCCTCATAAAACGTTCTTCTTCTACTWCTTCTTCTCATTCCCAAATTCATTTGTGTGATATCATTTGTAAAACAAACTGCCCCCTCGTTTTTATTGCTTACAAATTGTGCTTCTGCCAGAAGAGTTGTTGCCATTTTAGGAGCGGCTCGATGAGATTAGTGGGACAGATAAAAGTTGGGGCCTCTGAGGCAAAGCCTCCGTTTTTTCGTAAGTTTGTAGACTTCCGTGTCTCTTTGTTTGTGCTCTCCCGGGCGTCTCCAAACTAATAAGAATGATTCTGGAAGTGTATAGAATTCGAAACACACAAATTTGAATATTGTTTGGTGGGAGAGACACACAATGACGTCAGTGTGTGATTTTGGAGGAAGTTTTGTAGCAATATGTATAATTAGTAGACAAAGAAATTATAAGAATCGGCTGGAAGCATGAATATCAAAAGAGCAAGATTTGTCTCAAAGAACACAGTGGTCTTACATTTTTGTCTTAAAGGCGCAATAGAGAACTACCGTGTCTTATTTTGACTTTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAACTGCAAATCATGTAGAAATA</pcr_primer_p1>
		<pcr_primer_p2>CAACTTTTATCTGTCCCACTAAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAACTGCAAATCATGTAGAAATATGTTAGTTTTCATGTTCTGTATTTTTTTTTCCAAAACTTGTCACACTGCTCCCTCATAAAACGTTCTTCTTCTACTTCTTCTTCTCATTCCCAAATTCATTTGTGTGATATCATTTGTAAAACAAACTGCCCCCTCGTTTTTATTGCTTACAAATTGTGCTTCTGCCAGAAGAGTTGTTGCCATTTTAGGAGCGGCTCGATGAGATTAGTGGGACAGATAAAAGTTG</canonical_amplicon>
		<polymorphic_amplicon>CAACTGCAAATCATGTAGAAATATGTTAGTTTTCATGTTCTGTATTTTTTTTTCCAAAACTTGTCACACTGCTCCCTCATAAAACGTTCTTCTTCTACTWCTTCTTCTCATTCCCAAATTCATTTGTGTGATATCATTTGTAAAACAAACTGCCCCCTCGTTTTTATTGCTTACAAATTGTGCTTCTGCCAGAAGAGTTGTTGCCATTTTAGGAGCGGCTCGATGAGATTAGTGGGACAGATAAAAGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39807</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>233799</contig_pos>
        <strand></strand>
        <context>aagatacaat[A/T]ttcaaattag</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ATTCCAGCTAGCTTTATGACTTGTAACTTCGCTCATAGACAAGATACAAT</left_flank>
        <right_flank>TTCAAATTAGTATCAGTTTGTAGTACTTATTGAGTTCTGTAATATCTATT</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGGACAGACAAAAACAAGTAGTAAAAGGAGCAGCAAACTGAATGGAATTTTCTAGGGGCCAAGAAGAAATCGAAAGGTAACCCTCAAAGATGAAGCTTCGTGTTCTATCCTGATTGTTTTCTTTTTTTCTCACTTGGGTAACCTGATATCTATCACACTTTGTAACTTTTCTTCACTTTTTTCGATGATTAATTTGAAAGATTTGGAAAAAGCGGAAAAATTGGTTGAAAATCTTGTCCTTTCTTTACCTTTTTCTTGAATTTCTTCCTTCTAGTCACATTGATAAACCGGGCTTTGAGCGGGTCCTTGCGGGCCCTGCTATAGTTTTATATAGAATCGATATTTTTGGACCAACTAAAACAGATATGATAGAACTGGACAAGTACTACAAAATGATAATATTTTGATTACTGTACCTATTTTATGAACAAAGTTACAAGTCAAAAACCATTCCAGCTAGCTTTATGACTTGTAACTTCGCTCATAGACAAGATACAATATTCAAATTAGTATCAGTTTGTAGTACTTATTGAGTTCTGTAATATCTATTTTAGTTGGTACAAAAATAATGATTCTGAAAGAAACTATGGCTCTATGAAGCCGAGAAGGCCCGCCAGCTCCGTTTACAACTACGTTTCTGGTACAATTTCCCCGCTTCTCCCGTGTGGTCTTGAGCCAAAATAAATGGTCTGTTCCGTCCATTTACAAACTTTGGTTTCATGAATCCTCAACACTTTTTTCCTTATCCGTTCCCCAAGGGGAATACGCAATATAAAAGGTCGAACAAAAAGAAACTTTAGTTTTTCTTTCCTGAGCCATTTGGGGGCGGAGCTTAGCAGAGAAGCTCTTCTCTCGTTTTCTTCTTTTCTTTTTTTTCGCCACGAGAGCGTCCGCCTTCTTTTCTCACCTTCAAGCACACTTTCCGCTTCACTTCCGACCATTTGGCCGCATGCCAGAAGTTTTTTTGTTTCTTCAAATTATGCATCATTCTTTTGAATGT</canonical>
            <polymorphic>GGGACAGACAAAAACAAGTAGTAAAAGGAGCAGCAAACTGAATGGAATTTTCTAGGGGCCAAGAAGAAATCGAAAGGTAACCCTCAAAGATGAAGCTTCGTGTTCTATCCTGATTGTTTTCTTTTTTTCTCACTTGGGTAACCTGATATCTATCACACTTTGTAACTTTTCTTCACTTTTTTCGATGATTAATTTGAAAGATTTGGAAAAAGCGGAAAAATTGGTTGAAAATCTTGTCCTTTCTTTACCTTTTTCTTGAATTTCTTCCTTCTAGTCACATTGATAAACCGGGCTTTGAGCGGGTCCTTGCGGGCCCTGCTATAGTTTTATATAGAATCGATATTTTTGGACCAACTAAAACAGATATGATAGAACTGGACAAGTACTACAAAATGATAATATTTTGATTACTGTACCTATTTTATGAACAAAGTTACAAGTCAAAAACCATTCCAGCTAGCTTTATGACTTGTAACTTCGCTCATAGACAAGATACAATWTTCAAATTAGTATCAGTTTGTAGTACTTATTGAGTTCTGTAATATCTATTTTAGTTGGTACAAAAATAATGATTCTGAAAGAAACTATGGCTCTATGAAGCCGAGAAGGCCCGCCAGCTCCGTTTACAACTACGTTTCTGGTACAATTTCCCCGCTTCTCCCGTGTGGTCTTGAGCCAAAATAAATGGTCTGTTCCGTCCATTTACAAACTTTGGTTTCATGAATCCTCAACACTTTTTTCCTTATCCGTTCCCCAAGGGGAATACGCAATATAAAAGGTCGAACAAAAAGAAACTTTAGTTTTTCTTTCCTGAGCCATTTGGGGGCGGAGCTTAGCAGAGAAGCTCTTCTCTCGTTTTCTTCTTTTCTTTTTTTTCGCCACGAGAGCGTCCGCCTTCTTTTCTCACCTTCAAGCACACTTTCCGCTTCACTTCCGACCATTTGGCCGCATGCCAGAAGTTTTTTTGTTTCTTCAAATTATGCATCATTCTTTTGAATGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 400 99</canonical_bands>
                <polymorphic_bands>600 400</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTCCTTCTAGTCACATTGATAAAC</pcr_primer_p1>
		<pcr_primer_p2>TGTACCAGAAACGTAGTTGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>381</pcr_amplicon_size>
		<canonical_amplicon>TTCCTTCTAGTCACATTGATAAACCGGGCTTTGAGCGGGTCCTTGCGGGCCCTGCTATAGTTTTATATAGAATCGATATTTTTGGACCAACTAAAACAGATATGATAGAACTGGACAAGTACTACAAAATGATAATATTTTGATTACTGTACCTATTTTATGAACAAAGTTACAAGTCAAAAACCATTCCAGCTAGCTTTATGACTTGTAACTTCGCTCATAGACAAGATACAATATTCAAATTAGTATCAGTTTGTAGTACTTATTGAGTTCTGTAATATCTATTTTAGTTGGTACAAAAATAATGATTCTGAAAGAAACTATGGCTCTATGAAGCCGAGAAGGCCCGCCAGCTCCGTTTACAACTACGTTTCTGGTACA</canonical_amplicon>
		<polymorphic_amplicon>TTCCTTCTAGTCACATTGATAAACCGGGCTTTGAGCGGGTCCTTGCGGGCCCTGCTATAGTTTTATATAGAATCGATATTTTTGGACCAACTAAAACAGATATGATAGAACTGGACAAGTACTACAAAATGATAATATTTTGATTACTGTACCTATTTTATGAACAAAGTTACAAGTCAAAAACCATTCCAGCTAGCTTTATGACTTGTAACTTCGCTCATAGACAAGATACAATWTTCAAATTAGTATCAGTTTGTAGTACTTATTGAGTTCTGTAATATCTATTTTAGTTGGTACAAAAATAATGATTCTGAAAGAAACTATGGCTCTATGAAGCCGAGAAGGCCCGCCAGCTCCGTTTACAACTACGTTTCTGGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39808</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>233815</contig_pos>
        <strand></strand>
        <context>attagtatca[G/A]tttgtagtac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TGACTTGTAACTTCGCTCATAGACAAGATACAATATTCAAATTAGTATCA</left_flank>
        <right_flank>TTTGTAGTACTTATTGAGTTCTGTAATATCTATTTTAGTTGGTACAAAAA</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGTAGTAAAAGGAGCAGCAAACTGAATGGAATTTTCTAGGGGCCAAGAAGAAATCGAAAGGTAACCCTCAAAGATGAAGCTTCGTGTTCTATCCTGATTGTTTTCTTTTTTTCTCACTTGGGTAACCTGATATCTATCACACTTTGTAACTTTTCTTCACTTTTTTCGATGATTAATTTGAAAGATTTGGAAAAAGCGGAAAAATTGGTTGAAAATCTTGTCCTTTCTTTACCTTTTTCTTGAATTTCTTCCTTCTAGTCACATTGATAAACCGGGCTTTGAGCGGGTCCTTGCGGGCCCTGCTATAGTTTTATATAGAATCGATATTTTTGGACCAACTAAAACAGATATGATAGAACTGGACAAGTACTACAAAATGATAATATTTTGATTACTGTACCTATTTTATGAACAAAGTTACAAGTCAAAAACCATTCCAGCTAGCTTTATGACTTGTAACTTCGCTCATAGACAAGATACAATATTCAAATTAGTATCAGTTTGTAGTACTTATTGAGTTCTGTAATATCTATTTTAGTTGGTACAAAAATAATGATTCTGAAAGAAACTATGGCTCTATGAAGCCGAGAAGGCCCGCCAGCTCCGTTTACAACTACGTTTCTGGTACAATTTCCCCGCTTCTCCCGTGTGGTCTTGAGCCAAAATAAATGGTCTGTTCCGTCCATTTACAAACTTTGGTTTCATGAATCCTCAACACTTTTTTCCTTATCCGTTCCCCAAGGGGAATACGCAATATAAAAGGTCGAACAAAAAGAAACTTTAGTTTTTCTTTCCTGAGCCATTTGGGGGCGGAGCTTAGCAGAGAAGCTCTTCTCTCGTTTTCTTCTTTTCTTTTTTTTCGCCACGAGAGCGTCCGCCTTCTTTTCTCACCTTCAAGCACACTTTCCGCTTCACTTCCGACCATTTGGCCGCATGCCAGAAGTTTTTTTGTTTCTTCAAATTATGCATCATTCTTTTGAATGTATAGGATTATTTTATT</canonical>
            <polymorphic>AGTAGTAAAAGGAGCAGCAAACTGAATGGAATTTTCTAGGGGCCAAGAAGAAATCGAAAGGTAACCCTCAAAGATGAAGCTTCGTGTTCTATCCTGATTGTTTTCTTTTTTTCTCACTTGGGTAACCTGATATCTATCACACTTTGTAACTTTTCTTCACTTTTTTCGATGATTAATTTGAAAGATTTGGAAAAAGCGGAAAAATTGGTTGAAAATCTTGTCCTTTCTTTACCTTTTTCTTGAATTTCTTCCTTCTAGTCACATTGATAAACCGGGCTTTGAGCGGGTCCTTGCGGGCCCTGCTATAGTTTTATATAGAATCGATATTTTTGGACCAACTAAAACAGATATGATAGAACTGGACAAGTACTACAAAATGATAATATTTTGATTACTGTACCTATTTTATGAACAAAGTTACAAGTCAAAAACCATTCCAGCTAGCTTTATGACTTGTAACTTCGCTCATAGACAAGATACAATATTCAAATTAGTATCARTTTGTAGTACTTATTGAGTTCTGTAATATCTATTTTAGTTGGTACAAAAATAATGATTCTGAAAGAAACTATGGCTCTATGAAGCCGAGAAGGCCCGCCAGCTCCGTTTACAACTACGTTTCTGGTACAATTTCCCCGCTTCTCCCGTGTGGTCTTGAGCCAAAATAAATGGTCTGTTCCGTCCATTTACAAACTTTGGTTTCATGAATCCTCAACACTTTTTTCCTTATCCGTTCCCCAAGGGGAATACGCAATATAAAAGGTCGAACAAAAAGAAACTTTAGTTTTTCTTTCCTGAGCCATTTGGGGGCGGAGCTTAGCAGAGAAGCTCTTCTCTCGTTTTCTTCTTTTCTTTTTTTTCGCCACGAGAGCGTCCGCCTTCTTTTCTCACCTTCAAGCACACTTTCCGCTTCACTTCCGACCATTTGGCCGCATGCCAGAAGTTTTTTTGTTTCTTCAAATTATGCATCATTCTTTTGAATGTATAGGATTATTTTATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTCCTTCTAGTCACATTGATAAAC</pcr_primer_p1>
		<pcr_primer_p2>TGTACCAGAAACGTAGTTGTAAA</pcr_primer_p2>
		<pcr_amplicon_size>381</pcr_amplicon_size>
		<canonical_amplicon>TTCCTTCTAGTCACATTGATAAACCGGGCTTTGAGCGGGTCCTTGCGGGCCCTGCTATAGTTTTATATAGAATCGATATTTTTGGACCAACTAAAACAGATATGATAGAACTGGACAAGTACTACAAAATGATAATATTTTGATTACTGTACCTATTTTATGAACAAAGTTACAAGTCAAAAACCATTCCAGCTAGCTTTATGACTTGTAACTTCGCTCATAGACAAGATACAATATTCAAATTAGTATCAGTTTGTAGTACTTATTGAGTTCTGTAATATCTATTTTAGTTGGTACAAAAATAATGATTCTGAAAGAAACTATGGCTCTATGAAGCCGAGAAGGCCCGCCAGCTCCGTTTACAACTACGTTTCTGGTACA</canonical_amplicon>
		<polymorphic_amplicon>TTCCTTCTAGTCACATTGATAAACCGGGCTTTGAGCGGGTCCTTGCGGGCCCTGCTATAGTTTTATATAGAATCGATATTTTTGGACCAACTAAAACAGATATGATAGAACTGGACAAGTACTACAAAATGATAATATTTTGATTACTGTACCTATTTTATGAACAAAGTTACAAGTCAAAAACCATTCCAGCTAGCTTTATGACTTGTAACTTCGCTCATAGACAAGATACAATATTCAAATTAGTATCARTTTGTAGTACTTATTGAGTTCTGTAATATCTATTTTAGTTGGTACAAAAATAATGATTCTGAAAGAAACTATGGCTCTATGAAGCCGAGAAGGCCCGCCAGCTCCGTTTACAACTACGTTTCTGGTACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39809</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>342258</contig_pos>
        <strand></strand>
        <context>tagccgtggc[C/A]gcatgtccca</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>CTTCTATGCAAGAATCGGAGCTGTGGAAGAAAAGCTCTGATAGCCGTGGC</left_flank>
        <right_flank>GCATGTCCCACAGCGATAACTACCGTAACCTAAAAACATTTTTGTTCTAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CAGAACAGGAAGTGATGATGATGCTGGTGTGAATAGAAATGTTAGGGTGATCCCTGCAACGGAAGTAATTAACGAATTTAGAAGAAGAGGATGGAAATGGGAGTAACAAGAAGAAATAAGCAAGGAGGATTTCTTGGAACAATCATCAAGTCTATTCTCAATCAAGATACAAAGCGGATTGAAACATTCCGAGGTTTCCGTTTAATTTTTTAATCTTCTCAATGAAATAAAGTTATCAATCCTAGCCTGATTGGCTCAACAGCTATCCTTGACTCGGAAAATACAAAAAGTTTTTAATCAATCATTTATTTCGTTTTTGATGAATTAAGTTTGGTTTATAATCAACGTTATGTAGTAGGGTTTGAAACCGAAAGGGACAAGAGCAAAGAAAATGGGATCGTTGACTTGGGCTTTTAAAGATGAACAACAAGTAAACTATCAATATTATGCTTCTATGCAAGAATCGGAGCTGTGGAAGAAAAGCTCTGATAGCCGTGGCCGCATGTCCCACAGCGATAACTACCGTAACCTAAAAACATTTTTGTTCTAGTTTTTTCATGCTTCTTGACCATTGAAGAAACAAATCCTGAAAATATAAATACTTTTAGGTAACGGTAGCCTGCTTTTTTTGTACCAGAATAACAGTTAGCAGCCTTATGTTTCAAACCAAAATGTTGTAATTTTGTTATTGTCAAAAATGATTCATTCAAAAGCGTTTCTTTTTTTGGAATTTGCTTTTAGAGCTGAATCATAGTTTAAGAAACATGAAAGTGAACCAAATCTTATGATTTTCCAAAAAATCTAGGCATAAAAAACTTTCAGCGGGAGAAGGAAGTAAACCTGACGAATATTTATTGGTTCTGTTATTTGTATTTTTCAGAATTCCCTTCACAGTGACGTCTTCTTCTAGACAATGTCTAATGACACACATTTTAACGAAAGCGAAATCGAAAAAAAAATACTTGGAGCTCTTTTTTGTAAATCAAGAAGTTTTCGGAGA</canonical>
            <polymorphic>CAGAACAGGAAGTGATGATGATGCTGGTGTGAATAGAAATGTTAGGGTGATCCCTGCAACGGAAGTAATTAACGAATTTAGAAGAAGAGGATGGAAATGGGAGTAACAAGAAGAAATAAGCAAGGAGGATTTCTTGGAACAATCATCAAGTCTATTCTCAATCAAGATACAAAGCGGATTGAAACATTCCGAGGTTTCCGTTTAATTTTTTAATCTTCTCAATGAAATAAAGTTATCAATCCTAGCCTGATTGGCTCAACAGCTATCCTTGACTCGGAAAATACAAAAAGTTTTTAATCAATCATTTATTTCGTTTTTGATGAATTAAGTTTGGTTTATAATCAACGTTATGTAGTAGGGTTTGAAACCGAAAGGGACAAGAGCAAAGAAAATGGGATCGTTGACTTGGGCTTTTAAAGATGAACAACAAGTAAACTATCAATATTATGCTTCTATGCAAGAATCGGAGCTGTGGAAGAAAAGCTCTGATAGCCGTGGCMGCATGTCCCACAGCGATAACTACCGTAACCTAAAAACATTTTTGTTCTAGTTTTTTCATGCTTCTTGACCATTGAAGAAACAAATCCTGAAAATATAAATACTTTTAGGTAACGGTAGCCTGCTTTTTTTGTACCAGAATAACAGTTAGCAGCCTTATGTTTCAAACCAAAATGTTGTAATTTTGTTATTGTCAAAAATGATTCATTCAAAAGCGTTTCTTTTTTTGGAATTTGCTTTTAGAGCTGAATCATAGTTTAAGAAACATGAAAGTGAACCAAATCTTATGATTTTCCAAAAAATCTAGGCATAAAAAACTTTCAGCGGGAGAAGGAAGTAAACCTGACGAATATTTATTGGTTCTGTTATTTGTATTTTTCAGAATTCCCTTCACAGTGACGTCTTCTTCTAGACAATGTCTAATGACACACATTTTAACGAAAGCGAAATCGAAAAAAAAATACTTGGAGCTCTTTTTTGTAAATCAAGAAGTTTTCGGAGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>245 225 148 120 91 59 34 32 14 9 9 8 6</canonical_bands>
                <polymorphic_bands>245 225 148 126 91 59 34 32 14 9 9 8</polymorphic_bands>
            </assay>
            <assay>
                <site>GCSGC</site>
                <isoschizomers>
                    <enzyme>TauI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GGCTTTTAAAGATGAACAACAA</pcr_primer_p1>
		<pcr_primer_p2>TAAGGCTGCTAACTGTTATTCTG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GGCTTTTAAAGATGAACAACAAGTAAACTATCAATATTATGCTTCTATGCAAGAATCGGAGCTGTGGAAGAAAAGCTCTGATAGCCGTGGCCGCATGTCCCACAGCGATAACTACCGTAACCTAAAAACATTTTTGTTCTAGTTTTTTCATGCTTCTTGACCATTGAAGAAACAAATCCTGAAAATATAAATACTTTTAGGTAACGGTAGCCTGCTTTTTTTGTACCAGAATAACAGTTAGCAGCCTTA</canonical_amplicon>
		<polymorphic_amplicon>GGCTTTTAAAGATGAACAACAAGTAAACTATCAATATTATGCTTCTATGCAAGAATCGGAGCTGTGGAAGAAAAGCTCTGATAGCCGTGGCMGCATGTCCCACAGCGATAACTACCGTAACCTAAAAACATTTTTGTTCTAGTTTTTTCATGCTTCTTGACCATTGAAGAAACAAATCCTGAAAATATAAATACTTTTAGGTAACGGTAGCCTGCTTTTTTTGTACCAGAATAACAGTTAGCAGCCTTA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39810</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>344114</contig_pos>
        <strand>+</strand>
        <context>ACATTTTTTC[A/G]AAGAACTTGT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATAATGGTTTCCTCATTAATATCATTGGATGCAACGATGCACATTTTTTC</left_flank>
        <right_flank>AAGAACTTGTAGTCTTCGTTTCTGGAAAAGTGAATTATGAGAAATGACAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCATTGACAAGCGCTCGCTTGGATTCCTGAATTTATTGGTTCGGAATCACGAGAAACAAAAATGAGGTACCTCGAACGGATGCCGACACAAAATTTGCTCATTTGGTTTTGGCTCTTCTTCCTCTTCGAGCATCATCAAGTCCAGAATAGCGTAGCCGTTTTTTCCGAAGATCCGGTAGCACTTCTTCTTGCCAGGAATCGTGATTTTCGTCACATCCTGACTCAGCTTTATCTTTGGCTGTGACGATTGTGCGACCAGCTACAAAACCAATTACGAGTTACGAAGCACAACGGTAAAATTGAACGATTGAAACTGAGCAATGCTGTGAAGTATATAATCAGAAAAACTCACCTTGTATACACATCCAAGAGCCGGTTGCTTTTGACATGTCACCAGGTGAGTGCCAACTCCAAATGAGTTGATTTCGTGCTTCTGCTCATTCAAAGACATAATGGTTTCCTCATTAATATCATTGGATGCAACGATGCACATTTTTTCGAAGAACTTGTAGTCTTCGTTTCTGGAAAAGTGAATTATGAGAAATGACAATAGGAAAATCAAGCTTACAGTGCAGCAACTTTGACGAATCTTACTCTTAACTCTCTCGAAAGGTATGACAAATCTCCAGAATCAATTCTACATCCCATTGACCTGTATCCGAGATCGTGAAGAGCCAACGAGACGGCTACAAAATTGATGACTCCACTTCGAAGAACGTCATAAGTGTCAATGAGAGCTAGGAATGAGTCTGGGAAGGCGATGGCGTAGGCAACAAACGCAGTGAGTTCTCCATCGGACACTTCTGATTGGACAACTCCCCAACTGATTTCTTCCAAAAGCCATTTACGCTTTTCAGTCGACAACTTGAAAAGATCGGAAGTTTCTTTTGAGTCTTTATGGTTAAGTGTACGGATTTTCAGCTCATCTGGAGAAGAAAACGAGCAAATGAAGCTGTGTGCTTGTGTTCCTTTGACTGGAATTCCATATAATTTTCCAGCC</canonical>
            <polymorphic>GCATTGACAAGCGCTCGCTTGGATTCCTGAATTTATTGGTTCGGAATCACGAGAAACAAAAATGAGGTACCTCGAACGGATGCCGACACAAAATTTGCTCATTTGGTTTTGGCTCTTCTTCCTCTTCGAGCATCATCAAGTCCAGAATAGCGTAGCCGTTTTTTCCGAAGATCCGGTAGCACTTCTTCTTGCCAGGAATCGTGATTTTCGTCACATCCTGACTCAGCTTTATCTTTGGCTGTGACGATTGTGCGACCAGCTACAAAACCAATTACGAGTTACGAAGCACAACGGTAAAATTGAACGATTGAAACTGAGCAATGCTGTGAAGTATATAATCAGAAAAACTCACCTTGTATACACATCCAAGAGCCGGTTGCTTTTGACATGTCACCAGGTGAGTGCCAACTCCAAATGAGTTGATTTCGTGCTTCTGCTCATTCAAAGACATAATGGTTTCCTCATTAATATCATTGGATGCAACGATGCACATTTTTTCRAAGAACTTGTAGTCTTCGTTTCTGGAAAAGTGAATTATGAGAAATGACAATAGGAAAATCAAGCTTACAGTGCAGCAACTTTGACGAATCTTACTCTTAACTCTCTCGAAAGGTATGACAAATCTCCAGAATCAATTCTACATCCCATTGACCTGTATCCGAGATCGTGAAGAGCCAACGAGACGGCTACAAAATTGATGACTCCACTTCGAAGAACGTCATAAGTGTCAATGAGAGCTAGGAATGAGTCTGGGAAGGCGATGGCGTAGGCAACAAACGCAGTGAGTTCTCCATCGGACACTTCTGATTGGACAACTCCCCAACTGATTTCTTCCAAAAGCCATTTACGCTTTTCAGTCGACAACTTGAAAAGATCGGAAGTTTCTTTTGAGTCTTTATGGTTAAGTGTACGGATTTTCAGCTCATCTGGAGAAGAAAACGAGCAAATGAAGCTGTGTGCTTGTGTTCCTTTGACTGGAATTCCATATAATTTTCCAGCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>498 291 211</canonical_bands>
                <polymorphic_bands>709 291</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>372 149 141 108 103 73 54</canonical_bands>
                <polymorphic_bands>480 149 141 103 73 54</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTGAGCAATGCTGTGAAGTAT</pcr_primer_p1>
		<pcr_primer_p2>CTTGATTTTCCTATTGTCATTTC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTGAGCAATGCTGTGAAGTATATAATCAGAAAAACTCACCTTGTATACACATCCAAGAGCCGGTTGCTTTTGACATGTCACCAGGTGAGTGCCAACTCCAAATGAGTTGATTTCGTGCTTCTGCTCATTCAAAGACATAATGGTTTCCTCATTAATATCATTGGATGCAACGATGCACATTTTTTCGAAGAACTTGTAGTCTTCGTTTCTGGAAAAGTGAATTATGAGAAATGACAATAGGAAAATCAAG</canonical_amplicon>
		<polymorphic_amplicon>CTGAGCAATGCTGTGAAGTATATAATCAGAAAAACTCACCTTGTATACACATCCAAGAGCCGGTTGCTTTTGACATGTCACCAGGTGAGTGCCAACTCCAAATGAGTTGATTTCGTGCTTCTGCTCATTCAAAGACATAATGGTTTCCTCATTAATATCATTGGATGCAACGATGCACATTTTTTCRAAGAACTTGTAGTCTTCGTTTCTGGAAAAGTGAATTATGAGAAATGACAATAGGAAAATCAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39811</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>344126</contig_pos>
        <strand>+</strand>
        <context>AGAACTTGTA[A/G]TCTTCGTTTC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TCATTAATATCATTGGATGCAACGATGCACATTTTTTCGAAGAACTTGTA</left_flank>
        <right_flank>TCTTCGTTTCTGGAAAAGTGAATTATGAGAAATGACAATAGGAAAATCAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTCGCTTGGATTCCTGAATTTATTGGTTCGGAATCACGAGAAACAAAAATGAGGTACCTCGAACGGATGCCGACACAAAATTTGCTCATTTGGTTTTGGCTCTTCTTCCTCTTCGAGCATCATCAAGTCCAGAATAGCGTAGCCGTTTTTTCCGAAGATCCGGTAGCACTTCTTCTTGCCAGGAATCGTGATTTTCGTCACATCCTGACTCAGCTTTATCTTTGGCTGTGACGATTGTGCGACCAGCTACAAAACCAATTACGAGTTACGAAGCACAACGGTAAAATTGAACGATTGAAACTGAGCAATGCTGTGAAGTATATAATCAGAAAAACTCACCTTGTATACACATCCAAGAGCCGGTTGCTTTTGACATGTCACCAGGTGAGTGCCAACTCCAAATGAGTTGATTTCGTGCTTCTGCTCATTCAAAGACATAATGGTTTCCTCATTAATATCATTGGATGCAACGATGCACATTTTTTCGAAGAACTTGTAGTCTTCGTTTCTGGAAAAGTGAATTATGAGAAATGACAATAGGAAAATCAAGCTTACAGTGCAGCAACTTTGACGAATCTTACTCTTAACTCTCTCGAAAGGTATGACAAATCTCCAGAATCAATTCTACATCCCATTGACCTGTATCCGAGATCGTGAAGAGCCAACGAGACGGCTACAAAATTGATGACTCCACTTCGAAGAACGTCATAAGTGTCAATGAGAGCTAGGAATGAGTCTGGGAAGGCGATGGCGTAGGCAACAAACGCAGTGAGTTCTCCATCGGACACTTCTGATTGGACAACTCCCCAACTGATTTCTTCCAAAAGCCATTTACGCTTTTCAGTCGACAACTTGAAAAGATCGGAAGTTTCTTTTGAGTCTTTATGGTTAAGTGTACGGATTTTCAGCTCATCTGGAGAAGAAAACGAGCAAATGAAGCTGTGTGCTTGTGTTCCTTTGACTGGAATTCCATATAATTTTCCAGCCAACACGTTGCTA</canonical>
            <polymorphic>GCTCGCTTGGATTCCTGAATTTATTGGTTCGGAATCACGAGAAACAAAAATGAGGTACCTCGAACGGATGCCGACACAAAATTTGCTCATTTGGTTTTGGCTCTTCTTCCTCTTCGAGCATCATCAAGTCCAGAATAGCGTAGCCGTTTTTTCCGAAGATCCGGTAGCACTTCTTCTTGCCAGGAATCGTGATTTTCGTCACATCCTGACTCAGCTTTATCTTTGGCTGTGACGATTGTGCGACCAGCTACAAAACCAATTACGAGTTACGAAGCACAACGGTAAAATTGAACGATTGAAACTGAGCAATGCTGTGAAGTATATAATCAGAAAAACTCACCTTGTATACACATCCAAGAGCCGGTTGCTTTTGACATGTCACCAGGTGAGTGCCAACTCCAAATGAGTTGATTTCGTGCTTCTGCTCATTCAAAGACATAATGGTTTCCTCATTAATATCATTGGATGCAACGATGCACATTTTTTCGAAGAACTTGTARTCTTCGTTTCTGGAAAAGTGAATTATGAGAAATGACAATAGGAAAATCAAGCTTACAGTGCAGCAACTTTGACGAATCTTACTCTTAACTCTCTCGAAAGGTATGACAAATCTCCAGAATCAATTCTACATCCCATTGACCTGTATCCGAGATCGTGAAGAGCCAACGAGACGGCTACAAAATTGATGACTCCACTTCGAAGAACGTCATAAGTGTCAATGAGAGCTAGGAATGAGTCTGGGAAGGCGATGGCGTAGGCAACAAACGCAGTGAGTTCTCCATCGGACACTTCTGATTGGACAACTCCCCAACTGATTTCTTCCAAAAGCCATTTACGCTTTTCAGTCGACAACTTGAAAAGATCGGAAGTTTCTTTTGAGTCTTTATGGTTAAGTGTACGGATTTTCAGCTCATCTGGAGAAGAAAACGAGCAAATGAAGCTGTGTGCTTGTGTTCCTTTGACTGGAATTCCATATAATTTTCCAGCCAACACGTTGCTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTGAGCAATGCTGTGAAGTAT</pcr_primer_p1>
		<pcr_primer_p2>AAGCTTGATTTTCCTATTGTCAT</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>CTGAGCAATGCTGTGAAGTATATAATCAGAAAAACTCACCTTGTATACACATCCAAGAGCCGGTTGCTTTTGACATGTCACCAGGTGAGTGCCAACTCCAAATGAGTTGATTTCGTGCTTCTGCTCATTCAAAGACATAATGGTTTCCTCATTAATATCATTGGATGCAACGATGCACATTTTTTCGAAGAACTTGTAGTCTTCGTTTCTGGAAAAGTGAATTATGAGAAATGACAATAGGAAAATCAAGCTT</canonical_amplicon>
		<polymorphic_amplicon>CTGAGCAATGCTGTGAAGTATATAATCAGAAAAACTCACCTTGTATACACATCCAAGAGCCGGTTGCTTTTGACATGTCACCAGGTGAGTGCCAACTCCAAATGAGTTGATTTCGTGCTTCTGCTCATTCAAAGACATAATGGTTTCCTCATTAATATCATTGGATGCAACGATGCACATTTTTTCGAAGAACTTGTARTCTTCGTTTCTGGAAAAGTGAATTATGAGAAATGACAATAGGAAAATCAAGCTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39812</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>350416</contig_pos>
        <strand>+</strand>
        <context>CAGTTTGATT[A/T]TAAAAAATCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GTTACTGATTAGAACTTCTCAAACGTTTGTACACCTGGTTCAGTTTGATT</left_flank>
        <right_flank>TAAAAAATCATGTTTGGAAATTGTCTAGTTAAGCTTTTCAGTGCCTTTTC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CACCACCCAAAAATCGACCAATCATCAAAACTGGCATGTTTCCAAAATGCTTGGTGATACAAGCTCCACCATAAAGAATGGCATACATTAGACAATTGTTACGGCGACCACTGAACATTTAGAAACTCTTTAAATTCAAGGTTTATAGCGAAACCCACAATTTATCGGCGATGGATCCGATGAAAGTTCCAAAAAGAAGACTTGATCCAATCCAGCAATGAAGAGGATTTCGATTTGATGTTTGGACATTCCATAGGATTCATAGAGGGCGTAGACATGAGGACCTTGCAGCCAATCTCCCGCTGAAAATTTTCAGATTTCCAGTTTCAAGATTAGTGTTGAAGTCTTGGAAGCTCGGAAAATTTGGATGTGGTTTAAGAAAAGTTTACTGAAATTTATCTAGTTTGAGTATATATTTGGAAAAAAAACTTTCAAATTCTGAGATGATTGTTACTGATTAGAACTTCTCAAACGTTTGTACACCTGGTTCAGTTTGATTTTAAAAAATCATGTTTGGAAATTGTCTAGTTAAGCTTTTCAGTGCCTTTTCAGTCGAAAGTTCGAGAATCCTGAAAAGCCAACTAGAACTTCTTGGATTTTTGTAGTTGGGAATTCTATCTAAATGTTTCTGCAGTTCATGGGATTTTTTTGATTGAAAACAAAATTTTTTGATTGAAAACAAGAAACTATGTCCTCTGGAATGGTTTCAACAGAAAGTTACCAAATACGAACAAGATCTAGTTTTCTTCAAATCTAAAAGTCTTTTTTGAATTTTTTCTAGGTGGCCTAAGTTGGAGTGTGAAGCTGAAGCAAATAAAAATGTTTTGGATAACCATATTCTGTCTAAATTCTAGTTTGAATGTAGAATTTTCATTTCAATTTACAAAAAGTTCAGTCTAACTCTCCTACATTTTTATAGGTCATTTTGTTTCCCTGGCCCTAAACAAACACAATTTTTACGATAACAGAATACTCGTCAGTGACGAGCCATCACTCGAAT</canonical>
            <polymorphic>CACCACCCAAAAATCGACCAATCATCAAAACTGGCATGTTTCCAAAATGCTTGGTGATACAAGCTCCACCATAAAGAATGGCATACATTAGACAATTGTTACGGCGACCACTGAACATTTAGAAACTCTTTAAATTCAAGGTTTATAGCGAAACCCACAATTTATCGGCGATGGATCCGATGAAAGTTCCAAAAAGAAGACTTGATCCAATCCAGCAATGAAGAGGATTTCGATTTGATGTTTGGACATTCCATAGGATTCATAGAGGGCGTAGACATGAGGACCTTGCAGCCAATCTCCCGCTGAAAATTTTCAGATTTCCAGTTTCAAGATTAGTGTTGAAGTCTTGGAAGCTCGGAAAATTTGGATGTGGTTTAAGAAAAGTTTACTGAAATTTATCTAGTTTGAGTATATATTTGGAAAAAAAACTTTCAAATTCTGAGATGATTGTTACTGATTAGAACTTCTCAAACGTTTGTACACCTGGTTCAGTTTGATTWTAAAAAATCATGTTTGGAAATTGTCTAGTTAAGCTTTTCAGTGCCTTTTCAGTCGAAAGTTCGAGAATCCTGAAAAGCCAACTAGAACTTCTTGGATTTTTGTAGTTGGGAATTCTATCTAAATGTTTCTGCAGTTCATGGGATTTTTTTGATTGAAAACAAAATTTTTTGATTGAAAACAAGAAACTATGTCCTCTGGAATGGTTTCAACAGAAAGTTACCAAATACGAACAAGATCTAGTTTTCTTCAAATCTAAAAGTCTTTTTTGAATTTTTTCTAGGTGGCCTAAGTTGGAGTGTGAAGCTGAAGCAAATAAAAATGTTTTGGATAACCATATTCTGTCTAAATTCTAGTTTGAATGTAGAATTTTCATTTCAATTTACAAAAAGTTCAGTCTAACTCTCCTACATTTTTATAGGTCATTTTGTTTCCCTGGCCCTAAACAAACACAATTTTTACGATAACAGAATACTCGTCAGTGACGAGCCATCACTCGAAT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>499 370 131</canonical_bands>
                <polymorphic_bands>869 131</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>471 245 130 125 29</canonical_bands>
                <polymorphic_bands>471 245 154 130</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AAAATTTGGATGTGGTTTAAGA</pcr_primer_p1>
		<pcr_primer_p2>CAACTACAAAAATCCAAGAAGTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AAAATTTGGATGTGGTTTAAGAAAAGTTTACTGAAATTTATCTAGTTTGAGTATATATTTGGAAAAAAAACTTTCAAATTCTGAGATGATTGTTACTGATTAGAACTTCTCAAACGTTTGTACACCTGGTTCAGTTTGATTTTAAAAAATCATGTTTGGAAATTGTCTAGTTAAGCTTTTCAGTGCCTTTTCAGTCGAAAGTTCGAGAATCCTGAAAAGCCAACTAGAACTTCTTGGATTTTTGTAGTTG</canonical_amplicon>
		<polymorphic_amplicon>AAAATTTGGATGTGGTTTAAGAAAAGTTTACTGAAATTTATCTAGTTTGAGTATATATTTGGAAAAAAAACTTTCAAATTCTGAGATGATTGTTACTGATTAGAACTTCTCAAACGTTTGTACACCTGGTTCAGTTTGATTWTAAAAAATCATGTTTGGAAATTGTCTAGTTAAGCTTTTCAGTGCCTTTTCAGTCGAAAGTTCGAGAATCCTGAAAAGCCAACTAGAACTTCTTGGATTTTTGTAGTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39813</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>439807</contig_pos>
        <strand>+</strand>
        <context>ACTGAATCAA[C/T]CGCTAACATC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTGCATTAATCTGGATCCCGAACAAGAACTCTTCCTAGAACTGAATCAA</left_flank>
        <right_flank>CGCTAACATCAATCAGGTCAAAGTGGGCGGAGTTTTTCTCCGATCTTCGG</right_flank>
        <qual_score>140</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAATAGTCCATCGCATCGTGTATAAAAAACTTGATTGGATACTAAAAACAGTGCTGCCAGCGAGTATCTTCTATTATTCTGCCACCAAAATTCTCCCAAATACAGATGCACAAAAATCAAAGCAACCGCACAAAATAAATAATACAACGGACGAATTCTTTTTAATCTTCAGTAATAAAAATTCAAAATATCAGAAATATTAAAAATATCAGAAAAATTCAAAATATCAGAAATATAATTTTTGAGTGATTTAATATTCGAGCCATTAGGTATCTAATAACAAAAAATCCGAAAATGAGACTTTGTGGATTCAGGGAGATTCCGCCAAACTTACATATCAACTCCCAGGTATCCGTTTACAAAAACCAGTGGAAATAAGTGATAACATAAGACGAAAGATATTGCCAATCCGCGTAAGCATTGAATGTCCAAACGCATTTTCTACTGGATCTGCATTAATCTGGATCCCGAACAAGAACTCTTCCTAGAACTGAATCAACCGCTAACATCAATCAGGTCAAAGTGGGCGGAGTTTTTCTCCGATCTTCGGAAGGGGAAACTCATATTCTGCGAGACACAAAAAACAGCAGCGCAAAAAAAAACTACAGATGAAATATCATCTTCGTGTATGCAAGAGCAAAATTACAAAAATAGACCGATATAAAAGTAGGTCGATATATAATACATTGTCAGTAAATTGGTTTTACTTAATTATATGGAATCCAAAAAGTTACATACTCTAAAAGAACATGAAGCCTTTACACCTGATGAAAATATCAAATTGTAGCTAACTAATAAGAAGTTCTTTATGATCTTTTGCATTCATTATTTTTCACCAACTGTTTCGTACATTCATAAATAAATTATCAAAACTTGGAATATGTGAAGAATGAAAAGTTATGGCTACAACTTTTGAAGAAAACCCGGATGTCCAATAAAGAAATCCATTACTACAACTTTTCGGATTTATGACAGTTTGACTTTTGCTAGATGATCCAAG</canonical>
            <polymorphic>AAATAGTCCATCGCATCGTGTATAAAAAACTTGATTGGATACTAAAAACAGTGCTGCCAGCGAGTATCTTCTATTATTCTGCCACCAAAATTCTCCCAAATACAGATGCACAAAAATCAAAGCAACCGCACAAAATAAATAATACAACGGACGAATTCTTTTTAATCTTCAGTAATAAAAATTCAAAATATCAGAAATATTAAAAATATCAGAAAAATTCAAAATATCAGAAATATAATTTTTGAGTGATTTAATATTCGAGCCATTAGGTATCTAATAACAAAAAATCCGAAAATGAGACTTTGTGGATTCAGGGAGATTCCGCCAAACTTACATATCAACTCCCAGGTATCCGTTTACAAAAACCAGTGGAAATAAGTGATAACATAAGACGAAAGATATTGCCAATCCGCGTAAGCATTGAATGTCCAAACGCATTTTCTACTGGATCTGCATTAATCTGGATCCCGAACAAGAACTCTTCCTAGAACTGAATCAAYCGCTAACATCAATCAGGTCAAAGTGGGCGGAGTTTTTCTCCGATCTTCGGAAGGGGAAACTCATATTCTGCGAGACACAAAAAACAGCAGCGCAAAAAAAAACTACAGATGAAATATCATCTTCGTGTATGCAAGAGCAAAATTACAAAAATAGACCGATATAAAAGTAGGTCGATATATAATACATTGTCAGTAAATTGGTTTTACTTAATTATATGGAATCCAAAAAGTTACATACTCTAAAAGAACATGAAGCCTTTACACCTGATGAAAATATCAAATTGTAGCTAACTAATAAGAAGTTCTTTATGATCTTTTGCATTCATTATTTTTCACCAACTGTTTCGTACATTCATAAATAAATTATCAAAACTTGGAATATGTGAAGAATGAAAAGTTATGGCTACAACTTTTGAAGAAAACCCGGATGTCCAATAAAGAAATCCATTACTACAACTTTTCGGATTTATGACAGTTTGACTTTTGCTAGATGATCCAAG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCGC</site>
                <isoschizomers>
                    <enzyme>AciI</enzyme>
                </isoschizomers>
                <canonical_bands>474 196 126 90 88 26</canonical_bands>
                <polymorphic_bands>474 196 126 116 88</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACTTACATATCAACTCCCAGGTA</pcr_primer_p1>
		<pcr_primer_p2>GTGTCTCGCAGAATATGAGTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>ACTTACATATCAACTCCCAGGTATCCGTTTACAAAAACCAGTGGAAATAAGTGATAACATAAGACGAAAGATATTGCCAATCCGCGTAAGCATTGAATGTCCAAACGCATTTTCTACTGGATCTGCATTAATCTGGATCCCGAACAAGAACTCTTCCTAGAACTGAATCAACCGCTAACATCAATCAGGTCAAAGTGGGCGGAGTTTTTCTCCGATCTTCGGAAGGGGAAACTCATATTCTGCGAGACAC</canonical_amplicon>
		<polymorphic_amplicon>ACTTACATATCAACTCCCAGGTATCCGTTTACAAAAACCAGTGGAAATAAGTGATAACATAAGACGAAAGATATTGCCAATCCGCGTAAGCATTGAATGTCCAAACGCATTTTCTACTGGATCTGCATTAATCTGGATCCCGAACAAGAACTCTTCCTAGAACTGAATCAAYCGCTAACATCAATCAGGTCAAAGTGGGCGGAGTTTTTCTCCGATCTTCGGAAGGGGAAACTCATATTCTGCGAGACAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39814</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>439891</contig_pos>
        <strand>+</strand>
        <context>GACACAAAAA[A/T]CWGCAGCGCA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTTTCTCCGATCTTCGGAAGGGGAAACTCATATTCTGCGAGACACAAAAA</left_flank>
        <right_flank>CAGCAGCGCAAAAAAAAACTACAGATGAAATATCATCTTCGTGTATGCAA</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCAAAATTCTCCCAAATACAGATGCACAAAAATCAAAGCAACCGCACAAAATAAATAATACAACGGACGAATTCTTTTTAATCTTCAGTAATAAAAATTCAAAATATCAGAAATATTAAAAATATCAGAAAAATTCAAAATATCAGAAATATAATTTTTGAGTGATTTAATATTCGAGCCATTAGGTATCTAATAACAAAAAATCCGAAAATGAGACTTTGTGGATTCAGGGAGATTCCGCCAAACTTACATATCAACTCCCAGGTATCCGTTTACAAAAACCAGTGGAAATAAGTGATAACATAAGACGAAAGATATTGCCAATCCGCGTAAGCATTGAATGTCCAAACGCATTTTCTACTGGATCTGCATTAATCTGGATCCCGAACAAGAACTCTTCCTAGAACTGAATCAACCGCTAACATCAATCAGGTCAAAGTGGGCGGAGTTTTTCTCCGATCTTCGGAAGGGGAAACTCATATTCTGCGAGACACAAAAAACAGCAGCGCAAAAAAAAACTACAGATGAAATATCATCTTCGTGTATGCAAGAGCAAAATTACAAAAATAGACCGATATAAAAGTAGGTCGATATATAATACATTGTCAGTAAATTGGTTTTACTTAATTATATGGAATCCAAAAAGTTACATACTCTAAAAGAACATGAAGCCTTTACACCTGATGAAAATATCAAATTGTAGCTAACTAATAAGAAGTTCTTTATGATCTTTTGCATTCATTATTTTTCACCAACTGTTTCGTACATTCATAAATAAATTATCAAAACTTGGAATATGTGAAGAATGAAAAGTTATGGCTACAACTTTTGAAGAAAACCCGGATGTCCAATAAAGAAATCCATTACTACAACTTTTCGGATTTATGACAGTTTGACTTTTGCTAGATGATCCAAGAACGGGCAAATGGAACTTAATGGTGCTAATGAATGGGGATGAATAGTTTTTACTAAACCTCCATGTGTTCATTAAATGGGACAC</canonical>
            <polymorphic>CCAAAATTCTCCCAAATACAGATGCACAAAAATCAAAGCAACCGCACAAAATAAATAATACAACGGACGAATTCTTTTTAATCTTCAGTAATAAAAATTCAAAATATCAGAAATATTAAAAATATCAGAAAAATTCAAAATATCAGAAATATAATTTTTGAGTGATTTAATATTCGAGCCATTAGGTATCTAATAACAAAAAATCCGAAAATGAGACTTTGTGGATTCAGGGAGATTCCGCCAAACTTACATATCAACTCCCAGGTATCCGTTTACAAAAACCAGTGGAAATAAGTGATAACATAAGACGAAAGATATTGCCAATCCGCGTAAGCATTGAATGTCCAAACGCATTTTCTACTGGATCTGCATTAATCTGGATCCCGAACAAGAACTCTTCCTAGAACTGAATCAACCGCTAACATCAATCAGGTCAAAGTGGGCGGAGTTTTTCTCCGATCTTCGGAAGGGGAAACTCATATTCTGCGAGACACAAAAAWCAGCAGCGCAAAAAAAAACTACAGATGAAATATCATCTTCGTGTATGCAAGAGCAAAATTACAAAAATAGACCGATATAAAAGTAGGTCGATATATAATACATTGTCAGTAAATTGGTTTTACTTAATTATATGGAATCCAAAAAGTTACATACTCTAAAAGAACATGAAGCCTTTACACCTGATGAAAATATCAAATTGTAGCTAACTAATAAGAAGTTCTTTATGATCTTTTGCATTCATTATTTTTCACCAACTGTTTCGTACATTCATAAATAAATTATCAAAACTTGGAATATGTGAAGAATGAAAAGTTATGGCTACAACTTTTGAAGAAAACCCGGATGTCCAATAAAGAAATCCATTACTACAACTTTTCGGATTTATGACAGTTTGACTTTTGCTAGATGATCCAAGAACGGGCAAATGGAACTTAATGGTGCTAATGAATGGGGATGAATAGTTTTTACTAAACCTCCATGTGTTCATTAAATGGGACAC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAAGCATTGAATGTCCAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATCGGTCTATTTTTGTAATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTAAGCATTGAATGTCCAAACGCATTTTCTACTGGATCTGCATTAATCTGGATCCCGAACAAGAACTCTTCCTAGAACTGAATCAACCGCTAACATCAATCAGGTCAAAGTGGGCGGAGTTTTTCTCCGATCTTCGGAAGGGGAAACTCATATTCTGCGAGACACAAAAAACAGCAGCGCAAAAAAAAACTACAGATGAAATATCATCTTCGTGTATGCAAGAGCAAAATTACAAAAATAGACCGAT</canonical_amplicon>
		<polymorphic_amplicon>GTAAGCATTGAATGTCCAAACGCATTTTCTACTGGATCTGCATTAATCTGGATCCCGAACAAGAACTCTTCCTAGAACTGAATCAACCGCTAACATCAATCAGGTCAAAGTGGGCGGAGTTTTTCTCCGATCTTCGGAAGGGGAAACTCATATTCTGCGAGACACAAAAAWCAGCAGCGCAAAAAAAAACTACAGATGAAATATCATCTTCGTGTATGCAAGAGCAAAATTACAAAAATAGACCGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39815</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>439893</contig_pos>
        <strand>+</strand>
        <context>CACAAAAAWC[A/T]GCAGCGCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTCTCCGATCTTCGGAAGGGGAAACTCATATTCTGCGAGACACAAAAAAC</left_flank>
        <right_flank>GCAGCGCAAAAAAAAACTACAGATGAAATATCATCTTCGTGTATGCAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AAAATTCTCCCAAATACAGATGCACAAAAATCAAAGCAACCGCACAAAATAAATAATACAACGGACGAATTCTTTTTAATCTTCAGTAATAAAAATTCAAAATATCAGAAATATTAAAAATATCAGAAAAATTCAAAATATCAGAAATATAATTTTTGAGTGATTTAATATTCGAGCCATTAGGTATCTAATAACAAAAAATCCGAAAATGAGACTTTGTGGATTCAGGGAGATTCCGCCAAACTTACATATCAACTCCCAGGTATCCGTTTACAAAAACCAGTGGAAATAAGTGATAACATAAGACGAAAGATATTGCCAATCCGCGTAAGCATTGAATGTCCAAACGCATTTTCTACTGGATCTGCATTAATCTGGATCCCGAACAAGAACTCTTCCTAGAACTGAATCAACCGCTAACATCAATCAGGTCAAAGTGGGCGGAGTTTTTCTCCGATCTTCGGAAGGGGAAACTCATATTCTGCGAGACACAAAAAACAGCAGCGCAAAAAAAAACTACAGATGAAATATCATCTTCGTGTATGCAAGAGCAAAATTACAAAAATAGACCGATATAAAAGTAGGTCGATATATAATACATTGTCAGTAAATTGGTTTTACTTAATTATATGGAATCCAAAAAGTTACATACTCTAAAAGAACATGAAGCCTTTACACCTGATGAAAATATCAAATTGTAGCTAACTAATAAGAAGTTCTTTATGATCTTTTGCATTCATTATTTTTCACCAACTGTTTCGTACATTCATAAATAAATTATCAAAACTTGGAATATGTGAAGAATGAAAAGTTATGGCTACAACTTTTGAAGAAAACCCGGATGTCCAATAAAGAAATCCATTACTACAACTTTTCGGATTTATGACAGTTTGACTTTTGCTAGATGATCCAAGAACGGGCAAATGGAACTTAATGGTGCTAATGAATGGGGATGAATAGTTTTTACTAAACCTCCATGTGTTCATTAAATGGGACACCG</canonical>
            <polymorphic>AAAATTCTCCCAAATACAGATGCACAAAAATCAAAGCAACCGCACAAAATAAATAATACAACGGACGAATTCTTTTTAATCTTCAGTAATAAAAATTCAAAATATCAGAAATATTAAAAATATCAGAAAAATTCAAAATATCAGAAATATAATTTTTGAGTGATTTAATATTCGAGCCATTAGGTATCTAATAACAAAAAATCCGAAAATGAGACTTTGTGGATTCAGGGAGATTCCGCCAAACTTACATATCAACTCCCAGGTATCCGTTTACAAAAACCAGTGGAAATAAGTGATAACATAAGACGAAAGATATTGCCAATCCGCGTAAGCATTGAATGTCCAAACGCATTTTCTACTGGATCTGCATTAATCTGGATCCCGAACAAGAACTCTTCCTAGAACTGAATCAACCGCTAACATCAATCAGGTCAAAGTGGGCGGAGTTTTTCTCCGATCTTCGGAAGGGGAAACTCATATTCTGCGAGACACAAAAAACWGCAGCGCAAAAAAAAACTACAGATGAAATATCATCTTCGTGTATGCAAGAGCAAAATTACAAAAATAGACCGATATAAAAGTAGGTCGATATATAATACATTGTCAGTAAATTGGTTTTACTTAATTATATGGAATCCAAAAAGTTACATACTCTAAAAGAACATGAAGCCTTTACACCTGATGAAAATATCAAATTGTAGCTAACTAATAAGAAGTTCTTTATGATCTTTTGCATTCATTATTTTTCACCAACTGTTTCGTACATTCATAAATAAATTATCAAAACTTGGAATATGTGAAGAATGAAAAGTTATGGCTACAACTTTTGAAGAAAACCCGGATGTCCAATAAAGAAATCCATTACTACAACTTTTCGGATTTATGACAGTTTGACTTTTGCTAGATGATCCAAGAACGGGCAAATGGAACTTAATGGTGCTAATGAATGGGGATGAATAGTTTTTACTAAACCTCCATGTGTTCATTAAATGGGACACCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GTAAGCATTGAATGTCCAAAC</pcr_primer_p1>
		<pcr_primer_p2>ATCGGTCTATTTTTGTAATTTTG</pcr_primer_p2>
		<pcr_amplicon_size>247</pcr_amplicon_size>
		<canonical_amplicon>GTAAGCATTGAATGTCCAAACGCATTTTCTACTGGATCTGCATTAATCTGGATCCCGAACAAGAACTCTTCCTAGAACTGAATCAACCGCTAACATCAATCAGGTCAAAGTGGGCGGAGTTTTTCTCCGATCTTCGGAAGGGGAAACTCATATTCTGCGAGACACAAAAAACAGCAGCGCAAAAAAAAACTACAGATGAAATATCATCTTCGTGTATGCAAGAGCAAAATTACAAAAATAGACCGAT</canonical_amplicon>
		<polymorphic_amplicon>GTAAGCATTGAATGTCCAAACGCATTTTCTACTGGATCTGCATTAATCTGGATCCCGAACAAGAACTCTTCCTAGAACTGAATCAACCGCTAACATCAATCAGGTCAAAGTGGGCGGAGTTTTTCTCCGATCTTCGGAAGGGGAAACTCATATTCTGCGAGACACAAAAAACWGCAGCGCAAAAAAAAACTACAGATGAAATATCATCTTCGTGTATGCAAGAGCAAAATTACAAAAATAGACCGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39816</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>483239</contig_pos>
        <strand>+</strand>
        <context>ACACAGTTRA[A/G]AATCAATTAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAGTTTTTCCAAAAAAAGATATAGATGTGGGTCACGAAACACAGTTAA</left_flank>
        <right_flank>AATCAATTATTTTACGAGAGCGAACTACTTTATACTAATAACGAAACAAG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTACTGGGTCTCGCTTACTTTGTACTTTTGCTGCAACGCAATCATCTCTGGAATGAATTTGGGATGATGTGACAAATCCGCGTCCATCAGAATGATAAATTCTCCTCTTGCGAACGACAGCCCATGCGAATAGGCGGTACCAAGTCCTAACTTTCCGGCACGTGGCTTTATCAGAATCTTATTTTCTCCGTATTCTTTTTCAAGAAGTTTTGCCACATCTTGAGTACCATCTGGAGAGGCGTCGTCGACAATAATAATCTACAAAATGGAAAAATTAAGGTGAAACTGAAGACTATAAGGACCAACTTCATAGGAAATCCCTTTCAAATATTTTTCAATGAGCCAAATGCAAATCGGCAGATTCTCCTTCTCATTGTAAGTTGGTAGGATGATGGAGTACTTCGGTGTATCCATTTTCTTCTGAAAAAATAAGACGTTTTTCATAACGGAAAAGTTTTTCCAAAAAAAGATATAGATGTGGGTCACGAAACACAGTTAAAAATCAATTATTTTACGAGAGCGAACTACTTTATACTAATAACGAAACAAGAAAAATTATAAAAAGGAAGAAAAACTAAGCAAAAAAGACAGACTATGAAACATCAATTTTTAGCTTTCTTTTGTGTTTTCTTCTCTGGCTGATCGTTATCTTGGCTCTCTTGACTCCCCGGCGCTGACCAAAACTTCATATATTCGCTCTCATCAAAAGTGTCATCGATAACTTCTGTTTTGGTAATCTTGGCTTTCGGTTTGCGTGCTGCCAGCCGCTGTCGTCGCTCTTCTTCGCTCAGTTGCTTCAAGTCGACAGCTGATTGGAAAGTCTGGAGGTTCAATACGTGTTCACAAAAATCTTTTATTTTAAATCAACCTGTCTCGGTTCGCTAGCCGGCACCATAATCGTCGATCCATCAGGCCGAATGAATTTGACTTGATATTTGTGAAGATAGTCTTTCCGGCTAACTTTCCCCAAACTGGCTCTCCAAGCGTTGTTCCGTTCTGA</canonical>
            <polymorphic>CTACTGGGTCTCGCTTACTTTGTACTTTTGCTGCAACGCAATCATCTCTGGAATGAATTTGGGATGATGTGACAAATCCGCGTCCATCAGAATGATAAATTCTCCTCTTGCGAACGACAGCCCATGCGAATAGGCGGTACCAAGTCCTAACTTTCCGGCACGTGGCTTTATCAGAATCTTATTTTCTCCGTATTCTTTTTCAAGAAGTTTTGCCACATCTTGAGTACCATCTGGAGAGGCGTCGTCGACAATAATAATCTACAAAATGGAAAAATTAAGGTGAAACTGAAGACTATAAGGACCAACTTCATAGGAAATCCCTTTCAAATATTTTTCAATGAGCCAAATGCAAATCGGCAGATTCTCCTTCTCATTGTAAGTTGGTAGGATGATGGAGTACTTCGGTGTATCCATTTTCTTCTGAAAAAATAAGACGTTTTTCATAACGGAAAAGTTTTTCCAAAAAAAGATATAGATGTGGGTCACGAAACACAGTTAARAATCAATTATTTTACGAGAGCGAACTACTTTATACTAATAACGAAACAAGAAAAATTATAAAAAGGAAGAAAAACTAAGCAAAAAAGACAGACTATGAAACATCAATTTTTAGCTTTCTTTTGTGTTTTCTTCTCTGGCTGATCGTTATCTTGGCTCTCTTGACTCCCCGGCGCTGACCAAAACTTCATATATTCGCTCTCATCAAAAGTGTCATCGATAACTTCTGTTTTGGTAATCTTGGCTTTCGGTTTGCGTGCTGCCAGCCGCTGTCGTCGCTCTTCTTCGCTCAGTTGCTTCAAGTCGACAGCTGATTGGAAAGTCTGGAGGTTCAATACGTGTTCACAAAAATCTTTTATTTTAAATCAACCTGTCTCGGTTCGCTAGCCGGCACCATAATCGTCGATCCATCAGGCCGAATGAATTTGACTTGATATTTGTGAAGATAGTCTTTCCGGCTAACTTTCCCCAAACTGGCTCTCCAAGCGTTGTTCCGTTCTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TAAGTTGGTAGGATGATGGAGTA</pcr_primer_p1>
		<pcr_primer_p2>ACACAAAAGAAAGCTAAAAATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TAAGTTGGTAGGATGATGGAGTACTTCGGTGTATCCATTTTCTTCTGAAAAAATAAGACGTTTTTCATAACGGAAAAGTTTTTCCAAAAAAAGATATAGATGTGGGTCACGAAACACAGTTAAAAATCAATTATTTTACGAGAGCGAACTACTTTATACTAATAACGAAACAAGAAAAATTATAAAAAGGAAGAAAAACTAAGCAAAAAAGACAGACTATGAAACATCAATTTTTAGCTTTCTTTTGTGT</canonical_amplicon>
		<polymorphic_amplicon>TAAGTTGGTAGGATGATGGAGTACTTCGGTGTATCCATTTTCTTCTGAAAAAATAAGACGTTTTTCATAACGGAAAAGTTTTTCCAAAAAAAGATATAGATGTGGGTCACGAAACACAGTTAARAATCAATTATTTTACGAGAGCGAACTACTTTATACTAATAACGAAACAAGAAAAATTATAAAAAGGAAGAAAAACTAAGCAAAAAAGACAGACTATGAAACATCAATTTTTAGCTTTCTTTTGTGT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39817</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>498896</contig_pos>
        <strand></strand>
        <context>CCAGATATTA[G/A]RACTTTTTTG</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>ATTTTATCCAGAAAAAAACATTCGCATTCATCCATTTTATCCAGATATTA</left_flank>
        <right_flank>GACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAA</right_flank>
        <qual_score>43</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATCGTAAATCAATTAAAAGTATGACTTCTGTTTTGAATATAGTTTTAAAAGGGACAGAGATTCCTGCAGGTAACGTTAAATAAATCCGACAAGGTCTCCTTTTTTGTATGAACACCTACCGACCCACTTTCCCATAGGGTGAGATCGGTTTAGTGCGTCACACCAATCAATAACCATAATTATGTCATTACTTTGTGCAATTGAACAGCACTAAAAATTTTGAGAAGAGGTTTCTGCGACGCCTCTTTTTTTTGTTTTCATTTCACTCTTCATTTTGTCTGATTCATACCAAAGCTTGAAGTTCACTTCCTTTTAATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTCGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGCATTCATCCATTTTATCCAGATATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTGTGTTGTTAAAATTTTGATATTTTTAAAATATTTTAGTGAACAAATTACGGGCTTTCAAATGAATATAGCCTCAATCCCTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAATTTTTTTTTCAAACGCGCCTAAGTCGCCCCAGCCACAATGGACCAAAAAATTAATAATACCAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTAAACCATTTTGATTGGAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACGAGCCTGTTGACCTACTTTTTTTATTTTACCAGATTGTAGTACTTAACAAGAGCTTTCATTTGCACTATTCAAAATAGGGTCATGCTCTGTCGGATTTTGAGTTATGGCCGTTTGAAATTTTTTTTTT</canonical>
            <polymorphic>GATCGTAAATCAATTAAAAGTATGACTTCTGTTTTGAATATAGTTTTAAAAGGGACAGAGATTCCTGCAGGTAACGTTAAATAAATCCGACAAGGTCTCCTTTTTTGTATGAACACCTACCGACCCACTTTCCCATAGGGTGAGATCGGTTTAGTGCGTCACACCAATCAATAACCATAATTATGTCATTACTTTGTGCAATTGAACAGCACTAAAAATTTTGAGAAGAGGTTTCTGCGACGCCTCTTTTTTTTGTTTTCATTTCACTCTTCATTTTGTCTGATTCATACCAAAGCTTGAAGTTCACTTCCTTTTAATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTCGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGCATTCATCCATTTTATCCAGATATTARGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTGTGTTGTTAAAATTTTGATATTTTTAAAATATTTTAGTGAACAAATTACGGGCTTTCAAATGAATATAGCCTCAATCCCTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAATTTTTTTTTCAAACGCGCCTAAGTCGCCCCAGCCACAATGGACCAAAAAATTAATAATACCAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTAAACCATTTTGATTGGAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACGAGCCTGTTGACCTACTTTTTTTATTTTACCAGATTGTAGTACTTAACAAGAGCTTTCATTTGCACTATTCAAAATAGGGTCATGCTCTGTCGGATTTTGAGTTATGGCCGTTTGAAATTTTTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTGATGAGATTTGTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>TTGAGGCTATATTCATTTGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGCATTCATCCATTTTATCCAGATATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTGTGTTGTTAAAATTTTGATATTTTTAAAATATTTTAGTGAACAAATTACGGGCTTTCAAATGAATATAGCCTCAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGCATTCATCCATTTTATCCAGATATTARGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTGTGTTGTTAAAATTTTGATATTTTTAAAATATTTTAGTGAACAAATTACGGGCTTTCAAATGAATATAGCCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39818</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>498897</contig_pos>
        <strand></strand>
        <context>CAGATATTAR[G/A]ACTTTTTTGA</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTTATCCAGAAAAAAACATTCGCATTCATCCATTTTATCCAGATATTAG</left_flank>
        <right_flank>ACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAA</right_flank>
        <qual_score>41</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATCGTAAATCAATTAAAAGTATGACTTCTGTTTTGAATATAGTTTTAAAAGGGACAGAGATTCCTGCAGGTAACGTTAAATAAATCCGACAAGGTCTCCTTTTTTGTATGAACACCTACCGACCCACTTTCCCATAGGGTGAGATCGGTTTAGTGCGTCACACCAATCAATAACCATAATTATGTCATTACTTTGTGCAATTGAACAGCACTAAAAATTTTGAGAAGAGGTTTCTGCGACGCCTCTTTTTTTTGTTTTCATTTCACTCTTCATTTTGTCTGATTCATACCAAAGCTTGAAGTTCACTTCCTTTTAATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTCGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGCATTCATCCATTTTATCCAGATATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTGTGTTGTTAAAATTTTGATATTTTTAAAATATTTTAGTGAACAAATTACGGGCTTTCAAATGAATATAGCCTCAATCCCTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAATTTTTTTTTCAAACGCGCCTAAGTCGCCCCAGCCACAATGGACCAAAAAATTAATAATACCAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTAAACCATTTTGATTGGAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACGAGCCTGTTGACCTACTTTTTTTATTTTACCAGATTGTAGTACTTAACAAGAGCTTTCATTTGCACTATTCAAAATAGGGTCATGCTCTGTCGGATTTTGAGTTATGGCCGTTTGAAATTTTTTTTTTT</canonical>
            <polymorphic>ATCGTAAATCAATTAAAAGTATGACTTCTGTTTTGAATATAGTTTTAAAAGGGACAGAGATTCCTGCAGGTAACGTTAAATAAATCCGACAAGGTCTCCTTTTTTGTATGAACACCTACCGACCCACTTTCCCATAGGGTGAGATCGGTTTAGTGCGTCACACCAATCAATAACCATAATTATGTCATTACTTTGTGCAATTGAACAGCACTAAAAATTTTGAGAAGAGGTTTCTGCGACGCCTCTTTTTTTTGTTTTCATTTCACTCTTCATTTTGTCTGATTCATACCAAAGCTTGAAGTTCACTTCCTTTTAATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTCGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGCATTCATCCATTTTATCCAGATATTAGRACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTGTGTTGTTAAAATTTTGATATTTTTAAAATATTTTAGTGAACAAATTACGGGCTTTCAAATGAATATAGCCTCAATCCCTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAATTTTTTTTTCAAACGCGCCTAAGTCGCCCCAGCCACAATGGACCAAAAAATTAATAATACCAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTAAACCATTTTGATTGGAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACGAGCCTGTTGACCTACTTTTTTTATTTTACCAGATTGTAGTACTTAACAAGAGCTTTCATTTGCACTATTCAAAATAGGGTCATGCTCTGTCGGATTTTGAGTTATGGCCGTTTGAAATTTTTTTTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GATTTTGATGAGATTTGTTTTTG</pcr_primer_p1>
		<pcr_primer_p2>TTGAGGCTATATTCATTTGAAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>GATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGCATTCATCCATTTTATCCAGATATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTGTGTTGTTAAAATTTTGATATTTTTAAAATATTTTAGTGAACAAATTACGGGCTTTCAAATGAATATAGCCTCAA</canonical_amplicon>
		<polymorphic_amplicon>GATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGCATTCATCCATTTTATCCAGATATTAGRACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTGTGTTGTTAAAATTTTGATATTTTTAAAATATTTTAGTGAACAAATTACGGGCTTTCAAATGAATATAGCCTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39819</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>499007</contig_pos>
        <strand></strand>
        <context>atatttttaa[A/C]atattttaGT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>TTTCAAACTGCAAAAAAAAAATTGTGTTGTTAAAATTTTGATATTTTTAA</left_flank>
        <right_flank>ATATTTTAGTGAACAAATTACGGGCTTTCAAATGAATATAGCCTCAATCC</right_flank>
        <qual_score>48</qual_score>
        <methods>cm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACACCTACCGACCCACTTTCCCATAGGGTGAGATCGGTTTAGTGCGTCACACCAATCAATAACCATAATTATGTCATTACTTTGTGCAATTGAACAGCACTAAAAATTTTGAGAAGAGGTTTCTGCGACGCCTCTTTTTTTTGTTTTCATTTCACTCTTCATTTTGTCTGATTCATACCAAAGCTTGAAGTTCACTTCCTTTTAATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTCGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGCATTCATCCATTTTATCCAGATATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTGTGTTGTTAAAATTTTGATATTTTTAAAATATTTTAGTGAACAAATTACGGGCTTTCAAATGAATATAGCCTCAATCCCTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAATTTTTTTTTCAAACGCGCCTAAGTCGCCCCAGCCACAATGGACCAAAAAATTAATAATACCAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTAAACCATTTTGATTGGAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACGAGCCTGTTGACCTACTTTTTTTATTTTACCAGATTGTAGTACTTAACAAGAGCTTTCATTTGCACTATTCAAAATAGGGTCATGCTCTGTCGGATTTTGAGTTATGGCCGTTTGAAATTTTTTTTTTTGAGTTTGATCTACCAGAAAAATTTTGGTAGATTAAAAAATATGTCAGCGTACTGGCCGTCAAAAATGGACCCTACTGCAAAAAAGTTCTTCTCAAAAGCTTAACTACGAA</canonical>
            <polymorphic>AACACCTACCGACCCACTTTCCCATAGGGTGAGATCGGTTTAGTGCGTCACACCAATCAATAACCATAATTATGTCATTACTTTGTGCAATTGAACAGCACTAAAAATTTTGAGAAGAGGTTTCTGCGACGCCTCTTTTTTTTGTTTTCATTTCACTCTTCATTTTGTCTGATTCATACCAAAGCTTGAAGTTCACTTCCTTTTAATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTCGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGCATTCATCCATTTTATCCAGATATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTGTGTTGTTAAAATTTTGATATTTTTAAMATATTTTAGTGAACAAATTACGGGCTTTCAAATGAATATAGCCTCAATCCCTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAATTTTTTTTTCAAACGCGCCTAAGTCGCCCCAGCCACAATGGACCAAAAAATTAATAATACCAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTAAACCATTTTGATTGGAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACGAGCCTGTTGACCTACTTTTTTTATTTTACCAGATTGTAGTACTTAACAAGAGCTTTCATTTGCACTATTCAAAATAGGGTCATGCTCTGTCGGATTTTGAGTTATGGCCGTTTGAAATTTTTTTTTTTGAGTTTGATCTACCAGAAAAATTTTGGTAGATTAAAAAATATGTCAGCGTACTGGCCGTCAAAAATGGACCCTACTGCAAAAAAGTTCTTCTCAAAAGCTTAACTACGAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>497 304 199</canonical_bands>
                <polymorphic_bands>696 304</polymorphic_bands>
            </assay>
            <assay>
                <site>AATATT</site>
                <isoschizomers>
                    <enzyme>SspI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGATGAGATTTGTTTTTGTATTC</pcr_primer_p1>
		<pcr_primer_p2>AGGGATTGAGGCTATATTCAT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGCATTCATCCATTTTATCCAGATATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTGTGTTGTTAAAATTTTGATATTTTTAAAATATTTTAGTGAACAAATTACGGGCTTTCAAATGAATATAGCCTCAATCCCT</canonical_amplicon>
		<polymorphic_amplicon>TTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGCATTCATCCATTTTATCCAGATATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTGTGTTGTTAAAATTTTGATATTTTTAAMATATTTTAGTGAACAAATTACGGGCTTTCAAATGAATATAGCCTCAATCCCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39820</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>499018</contig_pos>
        <strand>+</strand>
        <context>atattttaGT[A/G]AACAAATTAC</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAAAAAAAATTGTGTTGTTAAAATTTTGATATTTTTAAAATATTTTAGT</left_flank>
        <right_flank>AACAAATTACGGGCTTTCAAATGAATATAGCCTCAATCCCTGGGTACCCC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACCCACTTTCCCATAGGGTGAGATCGGTTTAGTGCGTCACACCAATCAATAACCATAATTATGTCATTACTTTGTGCAATTGAACAGCACTAAAAATTTTGAGAAGAGGTTTCTGCGACGCCTCTTTTTTTTGTTTTCATTTCACTCTTCATTTTGTCTGATTCATACCAAAGCTTGAAGTTCACTTCCTTTTAATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTCGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGCATTCATCCATTTTATCCAGATATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTGTGTTGTTAAAATTTTGATATTTTTAAAATATTTTAGTGAACAAATTACGGGCTTTCAAATGAATATAGCCTCAATCCCTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAATTTTTTTTTCAAACGCGCCTAAGTCGCCCCAGCCACAATGGACCAAAAAATTAATAATACCAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTAAACCATTTTGATTGGAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACGAGCCTGTTGACCTACTTTTTTTATTTTACCAGATTGTAGTACTTAACAAGAGCTTTCATTTGCACTATTCAAAATAGGGTCATGCTCTGTCGGATTTTGAGTTATGGCCGTTTGAAATTTTTTTTTTTGAGTTTGATCTACCAGAAAAATTTTGGTAGATTAAAAAATATGTCAGCGTACTGGCCGTCAAAAATGGACCCTACTGCAAAAAAGTTCTTCTCAAAAGCTTAACTACGAAAAAAGTTATGA</canonical>
            <polymorphic>ACCCACTTTCCCATAGGGTGAGATCGGTTTAGTGCGTCACACCAATCAATAACCATAATTATGTCATTACTTTGTGCAATTGAACAGCACTAAAAATTTTGAGAAGAGGTTTCTGCGACGCCTCTTTTTTTTGTTTTCATTTCACTCTTCATTTTGTCTGATTCATACCAAAGCTTGAAGTTCACTTCCTTTTAATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTCGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGCATTCATCCATTTTATCCAGATATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTGTGTTGTTAAAATTTTGATATTTTTAAAATATTTTAGTRAACAAATTACGGGCTTTCAAATGAATATAGCCTCAATCCCTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAATTTTTTTTTCAAACGCGCCTAAGTCGCCCCAGCCACAATGGACCAAAAAATTAATAATACCAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTAAACCATTTTGATTGGAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACGAGCCTGTTGACCTACTTTTTTTATTTTACCAGATTGTAGTACTTAACAAGAGCTTTCATTTGCACTATTCAAAATAGGGTCATGCTCTGTCGGATTTTGAGTTATGGCCGTTTGAAATTTTTTTTTTTGAGTTTGATCTACCAGAAAAATTTTGGTAGATTAAAAAATATGTCAGCGTACTGGCCGTCAAAAATGGACCCTACTGCAAAAAAGTTCTTCTCAAAAGCTTAACTACGAAAAAAGTTATGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>195 185 148 132 120 55 40 36 35 15 14 13 5 5 2</canonical_bands>
                <polymorphic_bands>195 185 156 148 132 55 40 35 15 14 13 5 5 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGGCCAAAAACTAAAAATTC</pcr_primer_p1>
		<pcr_primer_p2>TGGTTTTCTACATCTTTTGGTAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTGTGTTGTTAAAATTTTGATATTTTTAAAATATTTTAGTGAACAAATTACGGGCTTTCAAATGAATATAGCCTCAATCCCTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAATTTTTTTTTCAAACGCGCCTAAGTCGCCCCAGCCACAATGGACCAAAAAATTAATAATACCAAAAGATGTAGAAAACCA</canonical_amplicon>
		<polymorphic_amplicon>TTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTGTGTTGTTAAAATTTTGATATTTTTAAAATATTTTAGTRAACAAATTACGGGCTTTCAAATGAATATAGCCTCAATCCCTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAATTTTTTTTTCAAACGCGCCTAAGTCGCCCCAGCCACAATGGACCAAAAAATTAATAATACCAAAAGATGTAGAAAACCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39821</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>499104</contig_pos>
        <strand>+</strand>
        <context>GGGGCAACAA[A/G]TTTTTTTTCA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATCCCTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAA</left_flank>
        <right_flank>TTTTTTTTCAAACGCGCCTAAGTCGCCCCAGCCACAATGGACCAAAAAAT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCACTAAAAATTTTGAGAAGAGGTTTCTGCGACGCCTCTTTTTTTTGTTTTCATTTCACTCTTCATTTTGTCTGATTCATACCAAAGCTTGAAGTTCACTTCCTTTTAATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTCGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGCATTCATCCATTTTATCCAGATATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTGTGTTGTTAAAATTTTGATATTTTTAAAATATTTTAGTGAACAAATTACGGGCTTTCAAATGAATATAGCCTCAATCCCTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAATTTTTTTTTCAAACGCGCCTAAGTCGCCCCAGCCACAATGGACCAAAAAATTAATAATACCAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTAAACCATTTTGATTGGAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACGAGCCTGTTGACCTACTTTTTTTATTTTACCAGATTGTAGTACTTAACAAGAGCTTTCATTTGCACTATTCAAAATAGGGTCATGCTCTGTCGGATTTTGAGTTATGGCCGTTTGAAATTTTTTTTTTTGAGTTTGATCTACCAGAAAAATTTTGGTAGATTAAAAAATATGTCAGCGTACTGGCCGTCAAAAATGGACCCTACTGCAAAAAAGTTCTTCTCAAAAGCTTAACTACGAAAAAAGTTATGACCAAAATAAAATTTGCGAAAAATGAGACCTCACGCCAAATAGCGCAGGCTGCGCCTGCGCCTGAGCCTAAGCCTAAAAGCCTAAGG</canonical>
            <polymorphic>GCACTAAAAATTTTGAGAAGAGGTTTCTGCGACGCCTCTTTTTTTTGTTTTCATTTCACTCTTCATTTTGTCTGATTCATACCAAAGCTTGAAGTTCACTTCCTTTTAATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTCGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGCATTCATCCATTTTATCCAGATATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTGTGTTGTTAAAATTTTGATATTTTTAAAATATTTTAGTGAACAAATTACGGGCTTTCAAATGAATATAGCCTCAATCCCTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAARTTTTTTTTCAAACGCGCCTAAGTCGCCCCAGCCACAATGGACCAAAAAATTAATAATACCAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTAAACCATTTTGATTGGAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACGAGCCTGTTGACCTACTTTTTTTATTTTACCAGATTGTAGTACTTAACAAGAGCTTTCATTTGCACTATTCAAAATAGGGTCATGCTCTGTCGGATTTTGAGTTATGGCCGTTTGAAATTTTTTTTTTTGAGTTTGATCTACCAGAAAAATTTTGGTAGATTAAAAAATATGTCAGCGTACTGGCCGTCAAAAATGGACCCTACTGCAAAAAAGTTCTTCTCAAAAGCTTAACTACGAAAAAAGTTATGACCAAAATAAAATTTGCGAAAAATGAGACCTCACGCCAAATAGCGCAGGCTGCGCCTGCGCCTGAGCCTAAGCCTAAAAGCCTAAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>173 133 111 102 100 79 77 59 50 33 32 22 14 8 7</canonical_bands>
                <polymorphic_bands>173 133 129 111 102 100 77 59 33 32 22 14 8 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTCAAATGAATATAGCCTCAA</pcr_primer_p1>
		<pcr_primer_p2>AACAGGCTCGTTAAGTAGGTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTTTCAAATGAATATAGCCTCAATCCCTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAATTTTTTTTTCAAACGCGCCTAAGTCGCCCCAGCCACAATGGACCAAAAAATTAATAATACCAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTAAACCATTTTGATTGGAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACGAGCCTGTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTCAAATGAATATAGCCTCAATCCCTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAARTTTTTTTTCAAACGCGCCTAAGTCGCCCCAGCCACAATGGACCAAAAAATTAATAATACCAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTAAACCATTTTGATTGGAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACGAGCCTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39822</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>499140</contig_pos>
        <strand></strand>
        <context>CCCCAGCCAC[A/G]ATGGACCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CCATGGGGCAACAATTTTTTTTTCAAACGCGCCTAAGTCGCCCCAGCCAC</left_flank>
        <right_flank>ATGGACCAAAAAATTAATAATACCAAAAGATGTAGAAAACCAAACTCTAC</right_flank>
        <qual_score>45</qual_score>
        <methods>cm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCTTTTTTTTGTTTTCATTTCACTCTTCATTTTGTCTGATTCATACCAAAGCTTGAAGTTCACTTCCTTTTAATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTCGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGCATTCATCCATTTTATCCAGATATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTGTGTTGTTAAAATTTTGATATTTTTAAAATATTTTAGTGAACAAATTACGGGCTTTCAAATGAATATAGCCTCAATCCCTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAATTTTTTTTTCAAACGCGCCTAAGTCGCCCCAGCCACAATGGACCAAAAAATTAATAATACCAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTAAACCATTTTGATTGGAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACGAGCCTGTTGACCTACTTTTTTTATTTTACCAGATTGTAGTACTTAACAAGAGCTTTCATTTGCACTATTCAAAATAGGGTCATGCTCTGTCGGATTTTGAGTTATGGCCGTTTGAAATTTTTTTTTTTGAGTTTGATCTACCAGAAAAATTTTGGTAGATTAAAAAATATGTCAGCGTACTGGCCGTCAAAAATGGACCCTACTGCAAAAAAGTTCTTCTCAAAAGCTTAACTACGAAAAAAGTTATGACCAAAATAAAATTTGCGAAAAATGAGACCTCACGCCAAATAGCGCAGGCTGCGCCTGCGCCTGAGCCTAAGCCTAAAAGCCTAAGGGTTAAGCCTAAGCCTAAGGGTTAAGCCTAAGCCTAA</canonical>
            <polymorphic>TCTTTTTTTTGTTTTCATTTCACTCTTCATTTTGTCTGATTCATACCAAAGCTTGAAGTTCACTTCCTTTTAATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTCGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGCATTCATCCATTTTATCCAGATATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTGTGTTGTTAAAATTTTGATATTTTTAAAATATTTTAGTGAACAAATTACGGGCTTTCAAATGAATATAGCCTCAATCCCTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAATTTTTTTTTCAAACGCGCCTAAGTCGCCCCAGCCACRATGGACCAAAAAATTAATAATACCAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTAAACCATTTTGATTGGAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACGAGCCTGTTGACCTACTTTTTTTATTTTACCAGATTGTAGTACTTAACAAGAGCTTTCATTTGCACTATTCAAAATAGGGTCATGCTCTGTCGGATTTTGAGTTATGGCCGTTTGAAATTTTTTTTTTTGAGTTTGATCTACCAGAAAAATTTTGGTAGATTAAAAAATATGTCAGCGTACTGGCCGTCAAAAATGGACCCTACTGCAAAAAAGTTCTTCTCAAAAGCTTAACTACGAAAAAAGTTATGACCAAAATAAAATTTGCGAAAAATGAGACCTCACGCCAAATAGCGCAGGCTGCGCCTGCGCCTGAGCCTAAGCCTAAAAGCCTAAGGGTTAAGCCTAAGCCTAAGGGTTAAGCCTAAGCCTAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTTCAAATGAATATAGCCTCAA</pcr_primer_p1>
		<pcr_primer_p2>AACAGGCTCGTTAAGTAGGTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTTTCAAATGAATATAGCCTCAATCCCTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAATTTTTTTTTCAAACGCGCCTAAGTCGCCCCAGCCACAATGGACCAAAAAATTAATAATACCAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTAAACCATTTTGATTGGAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACGAGCCTGTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTCAAATGAATATAGCCTCAATCCCTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAATTTTTTTTTCAAACGCGCCTAAGTCGCCCCAGCCACRATGGACCAAAAAATTAATAATACCAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTAAACCATTTTGATTGGAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACGAGCCTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39823</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>499204</contig_pos>
        <strand>+</strand>
        <context>TTTACTGTTT[A/G]RACCATTTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTAATAATACCAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTT</left_flank>
        <right_flank>AACCATTTTGATTGGAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAAT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCCTTTTAATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTCGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGCATTCATCCATTTTATCCAGATATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTGTGTTGTTAAAATTTTGATATTTTTAAAATATTTTAGTGAACAAATTACGGGCTTTCAAATGAATATAGCCTCAATCCCTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAATTTTTTTTTCAAACGCGCCTAAGTCGCCCCAGCCACAATGGACCAAAAAATTAATAATACCAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTAAACCATTTTGATTGGAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACGAGCCTGTTGACCTACTTTTTTTATTTTACCAGATTGTAGTACTTAACAAGAGCTTTCATTTGCACTATTCAAAATAGGGTCATGCTCTGTCGGATTTTGAGTTATGGCCGTTTGAAATTTTTTTTTTTGAGTTTGATCTACCAGAAAAATTTTGGTAGATTAAAAAATATGTCAGCGTACTGGCCGTCAAAAATGGACCCTACTGCAAAAAAGTTCTTCTCAAAAGCTTAACTACGAAAAAAGTTATGACCAAAATAAAATTTGCGAAAAATGAGACCTCACGCCAAATAGCGCAGGCTGCGCCTGCGCCTGAGCCTAAGCCTAAAAGCCTAAGGGTTAAGCCTAAGCCTAAGGGTTAAGCCTAAGCCTAAGGGTTAAGCCTAAGCCTAAGGGTTAAGCCTAAGCCTAAGCCTACAGAGATCATTACACTCCAGT</canonical>
            <polymorphic>TCCTTTTAATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTCGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGCATTCATCCATTTTATCCAGATATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTGTGTTGTTAAAATTTTGATATTTTTAAAATATTTTAGTGAACAAATTACGGGCTTTCAAATGAATATAGCCTCAATCCCTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAATTTTTTTTTCAAACGCGCCTAAGTCGCCCCAGCCACAATGGACCAAAAAATTAATAATACCAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTRAACCATTTTGATTGGAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACGAGCCTGTTGACCTACTTTTTTTATTTTACCAGATTGTAGTACTTAACAAGAGCTTTCATTTGCACTATTCAAAATAGGGTCATGCTCTGTCGGATTTTGAGTTATGGCCGTTTGAAATTTTTTTTTTTGAGTTTGATCTACCAGAAAAATTTTGGTAGATTAAAAAATATGTCAGCGTACTGGCCGTCAAAAATGGACCCTACTGCAAAAAAGTTCTTCTCAAAAGCTTAACTACGAAAAAAGTTATGACCAAAATAAAATTTGCGAAAAATGAGACCTCACGCCAAATAGCGCAGGCTGCGCCTGCGCCTGAGCCTAAGCCTAAAAGCCTAAGGGTTAAGCCTAAGCCTAAGGGTTAAGCCTAAGCCTAAGGGTTAAGCCTAAGCCTAAGGGTTAAGCCTAAGCCTAAGCCTACAGAGATCATTACACTCCAGT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>501 300 199</canonical_bands>
                <polymorphic_bands>700 300</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>198 151 117 109 78 68 62 48 48 41 19 19 19 17 6</canonical_bands>
                <polymorphic_bands>198 151 117 110 109 78 68 48 41 19 19 19 17 6</polymorphic_bands>
            </assay>
            <assay>
                <site>GTTTAAAC</site>
                <isoschizomers>
                    <enzyme>MssI</enzyme>
                    <enzyme>PmeI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTCAAATGAATATAGCCTCAA</pcr_primer_p1>
		<pcr_primer_p2>AACAGGCTCGTTAAGTAGGTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTTTCAAATGAATATAGCCTCAATCCCTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAATTTTTTTTTCAAACGCGCCTAAGTCGCCCCAGCCACAATGGACCAAAAAATTAATAATACCAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTAAACCATTTTGATTGGAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACGAGCCTGTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTCAAATGAATATAGCCTCAATCCCTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAATTTTTTTTTCAAACGCGCCTAAGTCGCCCCAGCCACAATGGACCAAAAAATTAATAATACCAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTRAACCATTTTGATTGGAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACGAGCCTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39824</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>499205</contig_pos>
        <strand>+</strand>
        <context>TTACTGTTTR[A/G]ACCATTTTGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATAATACCAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTA</left_flank>
        <right_flank>ACCATTTTGATTGGAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATT</right_flank>
        <qual_score>147</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CCTTTTAATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTCGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGCATTCATCCATTTTATCCAGATATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTGTGTTGTTAAAATTTTGATATTTTTAAAATATTTTAGTGAACAAATTACGGGCTTTCAAATGAATATAGCCTCAATCCCTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAATTTTTTTTTCAAACGCGCCTAAGTCGCCCCAGCCACAATGGACCAAAAAATTAATAATACCAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTAAACCATTTTGATTGGAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACGAGCCTGTTGACCTACTTTTTTTATTTTACCAGATTGTAGTACTTAACAAGAGCTTTCATTTGCACTATTCAAAATAGGGTCATGCTCTGTCGGATTTTGAGTTATGGCCGTTTGAAATTTTTTTTTTTGAGTTTGATCTACCAGAAAAATTTTGGTAGATTAAAAAATATGTCAGCGTACTGGCCGTCAAAAATGGACCCTACTGCAAAAAAGTTCTTCTCAAAAGCTTAACTACGAAAAAAGTTATGACCAAAATAAAATTTGCGAAAAATGAGACCTCACGCCAAATAGCGCAGGCTGCGCCTGCGCCTGAGCCTAAGCCTAAAAGCCTAAGGGTTAAGCCTAAGCCTAAGGGTTAAGCCTAAGCCTAAGGGTTAAGCCTAAGCCTAAGGGTTAAGCCTAAGCCTAAGCCTACAGAGATCATTACACTCCAGTG</canonical>
            <polymorphic>CCTTTTAATCCCTTCATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTCGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGCATTCATCCATTTTATCCAGATATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTGTGTTGTTAAAATTTTGATATTTTTAAAATATTTTAGTGAACAAATTACGGGCTTTCAAATGAATATAGCCTCAATCCCTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAATTTTTTTTTCAAACGCGCCTAAGTCGCCCCAGCCACAATGGACCAAAAAATTAATAATACCAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTARACCATTTTGATTGGAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACGAGCCTGTTGACCTACTTTTTTTATTTTACCAGATTGTAGTACTTAACAAGAGCTTTCATTTGCACTATTCAAAATAGGGTCATGCTCTGTCGGATTTTGAGTTATGGCCGTTTGAAATTTTTTTTTTTGAGTTTGATCTACCAGAAAAATTTTGGTAGATTAAAAAATATGTCAGCGTACTGGCCGTCAAAAATGGACCCTACTGCAAAAAAGTTCTTCTCAAAAGCTTAACTACGAAAAAAGTTATGACCAAAATAAAATTTGCGAAAAATGAGACCTCACGCCAAATAGCGCAGGCTGCGCCTGCGCCTGAGCCTAAGCCTAAAAGCCTAAGGGTTAAGCCTAAGCCTAAGGGTTAAGCCTAAGCCTAAGGGTTAAGCCTAAGCCTAAGGGTTAAGCCTAAGCCTAAGCCTACAGAGATCATTACACTCCAGTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTTAAA</site>
                <isoschizomers>
                    <enzyme>AhaIII</enzyme>
                    <enzyme>DraI</enzyme>
                </isoschizomers>
                <canonical_bands>502 299 199</canonical_bands>
                <polymorphic_bands>701 299</polymorphic_bands>
            </assay>
            <assay>
                <site>TTAA</site>
                <isoschizomers>
                    <enzyme>MseI</enzyme>
                    <enzyme>Tru1I</enzyme>
                    <enzyme>Tru9I</enzyme>
                </isoschizomers>
                <canonical_bands>198 151 117 109 78 68 62 48 48 42 19 19 19 17 5</canonical_bands>
                <polymorphic_bands>198 151 117 110 109 78 68 48 42 19 19 19 17 5</polymorphic_bands>
            </assay>
            <assay>
                <site>GTTTAAAC</site>
                <isoschizomers>
                    <enzyme>MssI</enzyme>
                    <enzyme>PmeI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTTCAAATGAATATAGCCTCAA</pcr_primer_p1>
		<pcr_primer_p2>AACAGGCTCGTTAAGTAGGTC</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>CTTTCAAATGAATATAGCCTCAATCCCTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAATTTTTTTTTCAAACGCGCCTAAGTCGCCCCAGCCACAATGGACCAAAAAATTAATAATACCAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTAAACCATTTTGATTGGAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACGAGCCTGTT</canonical_amplicon>
		<polymorphic_amplicon>CTTTCAAATGAATATAGCCTCAATCCCTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAATTTTTTTTTCAAACGCGCCTAAGTCGCCCCAGCCACAATGGACCAAAAAATTAATAATACCAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTARACCATTTTGATTGGAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACGAGCCTGTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39825</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>499219</contig_pos>
        <strand>+</strand>
        <context>ATTTTGATTG[A/G]AGCCGCCGTT</context>
        <canonical_base>G</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATGTAGAAAACCAAACTCTACAACTTTACTGTTTAAACCATTTTGATTG</left_flank>
        <right_flank>AGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACG</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTCGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGCATTCATCCATTTTATCCAGATATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTGTGTTGTTAAAATTTTGATATTTTTAAAATATTTTAGTGAACAAATTACGGGCTTTCAAATGAATATAGCCTCAATCCCTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAATTTTTTTTTCAAACGCGCCTAAGTCGCCCCAGCCACAATGGACCAAAAAATTAATAATACCAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTAAACCATTTTGATTGGAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACGAGCCTGTTGACCTACTTTTTTTATTTTACCAGATTGTAGTACTTAACAAGAGCTTTCATTTGCACTATTCAAAATAGGGTCATGCTCTGTCGGATTTTGAGTTATGGCCGTTTGAAATTTTTTTTTTTGAGTTTGATCTACCAGAAAAATTTTGGTAGATTAAAAAATATGTCAGCGTACTGGCCGTCAAAAATGGACCCTACTGCAAAAAAGTTCTTCTCAAAAGCTTAACTACGAAAAAAGTTATGACCAAAATAAAATTTGCGAAAAATGAGACCTCACGCCAAATAGCGCAGGCTGCGCCTGCGCCTGAGCCTAAGCCTAAAAGCCTAAGGGTTAAGCCTAAGCCTAAGGGTTAAGCCTAAGCCTAAGGGTTAAGCCTAAGCCTAAGGGTTAAGCCTAAGCCTAAGCCTACAGAGATCATTACACTCCAGTGGGAGTCGAACCCCG</canonical>
            <polymorphic>CATATTTTACCTGATGGCCCATAACCTACTCTTAGTTAGTAGTCGAATCGAACTGAGAGAAGCTTGAATTCAAATGAAGGCTAACCGATTTTGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGCATTCATCCATTTTATCCAGATATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTGTGTTGTTAAAATTTTGATATTTTTAAAATATTTTAGTGAACAAATTACGGGCTTTCAAATGAATATAGCCTCAATCCCTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAATTTTTTTTTCAAACGCGCCTAAGTCGCCCCAGCCACAATGGACCAAAAAATTAATAATACCAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTAAACCATTTTGATTGRAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACGAGCCTGTTGACCTACTTTTTTTATTTTACCAGATTGTAGTACTTAACAAGAGCTTTCATTTGCACTATTCAAAATAGGGTCATGCTCTGTCGGATTTTGAGTTATGGCCGTTTGAAATTTTTTTTTTTGAGTTTGATCTACCAGAAAAATTTTGGTAGATTAAAAAATATGTCAGCGTACTGGCCGTCAAAAATGGACCCTACTGCAAAAAAGTTCTTCTCAAAAGCTTAACTACGAAAAAAGTTATGACCAAAATAAAATTTGCGAAAAATGAGACCTCACGCCAAATAGCGCAGGCTGCGCCTGCGCCTGAGCCTAAGCCTAAAAGCCTAAGGGTTAAGCCTAAGCCTAAGGGTTAAGCCTAAGCCTAAGGGTTAAGCCTAAGCCTAAGGGTTAAGCCTAAGCCTAAGCCTACAGAGATCATTACACTCCAGTGGGAGTCGAACCCCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGNNCC</site>
                <isoschizomers>
                    <enzyme>BscBI</enzyme>
                    <enzyme>BspLI</enzyme>
                    <enzyme>NlaIV</enzyme>
                    <enzyme>PspN4I</enzyme>
                </isoschizomers>
                <canonical_bands>344 253 246 157</canonical_bands>
                <polymorphic_bands>403 344 253</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGATGTAGAAAACCAAACT</pcr_primer_p1>
		<pcr_primer_p2>TTCTGGTAGATCAAACTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTAAACCATTTTGATTGGAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACGAGCCTGTTGACCTACTTTTTTTATTTTACCAGATTGTAGTACTTAACAAGAGCTTTCATTTGCACTATTCAAAATAGGGTCATGCTCTGTCGGATTTTGAGTTATGGCCGTTTGAAATTTTTTTTTTTGAGTTTGATCTACCAGAA</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTAAACCATTTTGATTGRAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACGAGCCTGTTGACCTACTTTTTTTATTTTACCAGATTGTAGTACTTAACAAGAGCTTTCATTTGCACTATTCAAAATAGGGTCATGCTCTGTCGGATTTTGAGTTATGGCCGTTTGAAATTTTTTTTTTTGAGTTTGATCTACCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39826</snp_id>
        <super_contig>c014301237.Contig1</super_contig>
        <contig_pos>499310</contig_pos>
        <strand>+</strand>
        <context>AGATTGTAGT[A/T]CTTAACAAGA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CTACTTAACGAGCCTGTTGACCTACTTTTTTTATTTTACCAGATTGTAGT</left_flank>
        <right_flank>CTTAACAAGAGCTTTCATTTGCACTATTCAAAATAGGGTCATGCTCTGTC</right_flank>
        <qual_score>144</qual_score>
        <methods>cpm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGCATTCATCCATTTTATCCAGATATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTGTGTTGTTAAAATTTTGATATTTTTAAAATATTTTAGTGAACAAATTACGGGCTTTCAAATGAATATAGCCTCAATCCCTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAATTTTTTTTTCAAACGCGCCTAAGTCGCCCCAGCCACAATGGACCAAAAAATTAATAATACCAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTAAACCATTTTGATTGGAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACGAGCCTGTTGACCTACTTTTTTTATTTTACCAGATTGTAGTACTTAACAAGAGCTTTCATTTGCACTATTCAAAATAGGGTCATGCTCTGTCGGATTTTGAGTTATGGCCGTTTGAAATTTTTTTTTTTGAGTTTGATCTACCAGAAAAATTTTGGTAGATTAAAAAATATGTCAGCGTACTGGCCGTCAAAAATGGACCCTACTGCAAAAAAGTTCTTCTCAAAAGCTTAACTACGAAAAAAGTTATGACCAAAATAAAATTTGCGAAAAATGAGACCTCACGCCAAATAGCGCAGGCTGCGCCTGCGCCTGAGCCTAAGCCTAAAAGCCTAAGGGTTAAGCCTAAGCCTAAGGGTTAAGCCTAAGCCTAAGGGTTAAGCCTAAGCCTAAGGGTTAAGCCTAAGCCTAAGCCTACAGAGATCATTACACTCCAGTGGGAGTCGAACCCCGCGTACCTGCCTCGTCCCGTTGATCCGTGTCCGTCTGTCTACCCCCCTCGGCCAAGGCAGTGTCGTTTTGCGTTTAAGTGTGCGAGGAGAGG</canonical>
            <polymorphic>TGATGAGATTTGTTTTTGTATTCACAAGAAAACAAATTTTATCCAGAAAAAAACATTCGCATTCATCCATTTTATCCAGATATTAGGACTTTTTTGATTAAAGCCGTCGCTACCGAGTTATTGGCCAAAAACTAAAAATTCGTAATTTTCAAACTGCAAAAAAAAAATTGTGTTGTTAAAATTTTGATATTTTTAAAATATTTTAGTGAACAAATTACGGGCTTTCAAATGAATATAGCCTCAATCCCTGGGTACCCCAGCGTTTTTTGCAATAGCGTACCATGGGGCAACAATTTTTTTTTCAAACGCGCCTAAGTCGCCCCAGCCACAATGGACCAAAAAATTAATAATACCAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTAAACCATTTTGATTGGAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACGAGCCTGTTGACCTACTTTTTTTATTTTACCAGATTGTAGTWCTTAACAAGAGCTTTCATTTGCACTATTCAAAATAGGGTCATGCTCTGTCGGATTTTGAGTTATGGCCGTTTGAAATTTTTTTTTTTGAGTTTGATCTACCAGAAAAATTTTGGTAGATTAAAAAATATGTCAGCGTACTGGCCGTCAAAAATGGACCCTACTGCAAAAAAGTTCTTCTCAAAAGCTTAACTACGAAAAAAGTTATGACCAAAATAAAATTTGCGAAAAATGAGACCTCACGCCAAATAGCGCAGGCTGCGCCTGCGCCTGAGCCTAAGCCTAAAAGCCTAAGGGTTAAGCCTAAGCCTAAGGGTTAAGCCTAAGCCTAAGGGTTAAGCCTAAGCCTAAGGGTTAAGCCTAAGCCTAAGCCTACAGAGATCATTACACTCCAGTGGGAGTCGAACCCCGCGTACCTGCCTCGTCCCGTTGATCCGTGTCCGTCTGTCTACCCCCCTCGGCCAAGGCAGTGTCGTTTTGCGTTTAAGTGTGCGAGGAGAGG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGTACT</site>
                <isoschizomers>
                    <enzyme>Acc113I</enzyme>
                    <enzyme>ScaI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>GTAC</site>
                <isoschizomers>
                    <enzyme>AfaI</enzyme>
                    <enzyme>Csp6I</enzyme>
                    <enzyme>RsaI</enzyme>
                </isoschizomers>
                <canonical_bands>275 253 221 138 88 25</canonical_bands>
                <polymorphic_bands>359 275 253 88 25</polymorphic_bands>
            </assay>
            <assay>
                <site>WGTACW</site>
                <isoschizomers>
                    <enzyme>TatI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAAAAGATGTAGAAAACCAAACT</pcr_primer_p1>
		<pcr_primer_p2>TTCTGGTAGATCAAACTCAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>CAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTAAACCATTTTGATTGGAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACGAGCCTGTTGACCTACTTTTTTTATTTTACCAGATTGTAGTACTTAACAAGAGCTTTCATTTGCACTATTCAAAATAGGGTCATGCTCTGTCGGATTTTGAGTTATGGCCGTTTGAAATTTTTTTTTTTGAGTTTGATCTACCAGAA</canonical_amplicon>
		<polymorphic_amplicon>CAAAAGATGTAGAAAACCAAACTCTACAACTTTACTGTTTAAACCATTTTGATTGGAGCCGCCGTTCTCGAGTTATAGGCCAAAAACCAATTTGACCTACTTAACGAGCCTGTTGACCTACTTTTTTTATTTTACCAGATTGTAGTWCTTAACAAGAGCTTTCATTTGCACTATTCAAAATAGGGTCATGCTCTGTCGGATTTTGAGTTATGGCCGTTTGAAATTTTTTTTTTTGAGTTTGATCTACCAGAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39827</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>1878</contig_pos>
        <strand>-</strand>
        <context>TCGACAGTTT[G/T]AAACCTCYCC</context>
        <canonical_base>C</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CCATCAGCTACAGTACCTCGTTATCTACAGTACCCCTTTATCGACAGTTT</left_flank>
        <right_flank>AAACCTCACCTCCCGTTGTGTTGAACAACTTCTCAATCATTTTTTCATTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TATCTTCCTCATCCGTTCTTCCTTCCTCATCCGCCAAATAGCCCCGATTTTGCGCCTTCCGATTTCCCCTCATTCAGATCTATGCGACCCTCATTAGCCGAGAACCACTGCGAAAGCCGGGATGAGACCGAAAAATGTGTAGTCGCCTACTTTTGAGTCACAGCCAGTGGAGTTCTTCCACAGCGAAACCCATTCTTAGCGCGGATGTTAGCGACAAGTAATTGATAATCATGGCAAATAGCTTTCGGATTAATATTGTCTACTTCCGTTTTTATGATAAATTTAATTAATCATAAAAACGCGCATTATTATTTAGCCAACCTAATGGAAATTGCATAAGTTTTCAATACTACTGTAATACTTGCTAGCTCTAACTCTTGGGGTCTCTATTTCTACAGTAATCCTTTTTATCCTACATACGGTATCCTACACTGTCAGCTACAGTGATCCCATCAGCTACAGTACCTCGTTATCTACAGTACCCCTTTATCGACAGTTTCAAACCTCACCTCCCGTTGTGTTGAACAACTTCTCAATCATTTTTTCATTTTTATTTTTTATCGAATCCAAAAATAATTTCACATGTCTCTTTCCGATTTCCAATGCTTTCGATTCTTGATTTCCCACTTTCAGATGTGGAATTCCTTGAGAAAAACATCCGAAAATGAAGAAGAAAATGAATAGAATAGCAGATTTCATTTTTGAAATCTTCCGAATGCTATTTCGATATCAAAAGAGGCTCTTTTTATAGGCCAAAAATAAGGGATACTAAAATTTGCATATTGTTCAAGGGGGTGGAGTCAGGGTAAACTACGCCCACACATGGAAACAAAAAATATGATAATTTTATGAGAATTTTTTTTGTATTCTTTTTTTCTGTATAAGGGTACTAGCATTATTATTCTTGTGCAAAAAAATTGGAGTTGTGGCCGAATTTTCACCAAGTTAGGCCACCGTATTTCAAGGAGAAATTTCGAAAACACAGCCGGCAAACGAGTGC</canonical>
            <polymorphic>TATCTTCCTCATCCGTTCTTCCTTCCTCATCCGCCAAATAGCCCCGATTTTGCGCCTTCCGATTTCCCCTCATTCAGATCTATGCGACCCTCATTAGCCGAGAACCACTGCGAAAGCCGGGATGAGACCGAAAAATGTGTAGTCGCCTACTTTTGAGTCACAGCCAGTGGAGTTCTTCCACAGCGAAACCCATTCTTAGCGCGGATGTTAGCGACAAGTAATTGATAATCATGGCAAATAGCTTTCGGATTAATATTGTCTACTTCCGTTTTTATGATAAATTTAATTAATCATAAAAACGCGCATTATTATTTAGCCAACCTAATGGAAATTGCATAAGTTTTCAATACTACTGTAATACTTGCTAGCTCTAACTCTTGGGGTCTCTATTTCTACAGTAATCCTTTTTATCCTACATACGGTATCCTACACTGTCAGCTACAGTGATCCCATCAGCTACAGTACCTCGTTATCTACAGTACCCCTTTATCGACAGTTTKAAACCTCACCTCCCGTTGTGTTGAACAACTTCTCAATCATTTTTTCATTTTTATTTTTTATCGAATCCAAAAATAATTTCACATGTCTCTTTCCGATTTCCAATGCTTTCGATTCTTGATTTCCCACTTTCAGATGTGGAATTCCTTGAGAAAAACATCCGAAAATGAAGAAGAAAATGAATAGAATAGCAGATTTCATTTTTGAAATCTTCCGAATGCTATTTCGATATCAAAAGAGGCTCTTTTTATAGGCCAAAAATAAGGGATACTAAAATTTGCATATTGTTCAAGGGGGTGGAGTCAGGGTAAACTACGCCCACACATGGAAACAAAAAATATGATAATTTTATGAGAATTTTTTTTGTATTCTTTTTTTCTGTATAAGGGTACTAGCATTATTATTCTTGTGCAAAAAAATTGGAGTTGTGGCCGAATTTTCACCAAGTTAGGCCACCGTATTTCAAGGAGAAATTTCGAAAACACAGCCGGCAAACGAGTGC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTAACTCTTGGGGTCTCTATTTC</pcr_primer_p1>
		<pcr_primer_p2>ATCAAGAATCGAAAGCATTG</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTAACTCTTGGGGTCTCTATTTCTACAGTAATCCTTTTTATCCTACATACGGTATCCTACACTGTCAGCTACAGTGATCCCATCAGCTACAGTACCTCGTTATCTACAGTACCCCTTTATCGACAGTTTCAAACCTCACCTCCCGTTGTGTTGAACAACTTCTCAATCATTTTTTCATTTTTATTTTTTATCGAATCCAAAAATAATTTCACATGTCTCTTTCCGATTTCCAATGCTTTCGATTCTTGAT</canonical_amplicon>
		<polymorphic_amplicon>CTAACTCTTGGGGTCTCTATTTCTACAGTAATCCTTTTTATCCTACATACGGTATCCTACACTGTCAGCTACAGTGATCCCATCAGCTACAGTACCTCGTTATCTACAGTACCCCTTTATCGACAGTTTKAAACCTCACCTCCCGTTGTGTTGAACAACTTCTCAATCATTTTTTCATTTTTATTTTTTATCGAATCCAAAAATAATTTCACATGTCTCTTTCCGATTTCCAATGCTTTCGATTCTTGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39828</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>1886</contig_pos>
        <strand>-</strand>
        <context>TTKAAACCTC[C/T]CCTCCCGTTG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TACAGTACCTCGTTATCTACAGTACCCCTTTATCGACAGTTTCAAACCTC</left_flank>
        <right_flank>CCTCCCGTTGTGTTGAACAACTTCTCAATCATTTTTTCATTTTTATTTTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCATCCGTTCTTCCTTCCTCATCCGCCAAATAGCCCCGATTTTGCGCCTTCCGATTTCCCCTCATTCAGATCTATGCGACCCTCATTAGCCGAGAACCACTGCGAAAGCCGGGATGAGACCGAAAAATGTGTAGTCGCCTACTTTTGAGTCACAGCCAGTGGAGTTCTTCCACAGCGAAACCCATTCTTAGCGCGGATGTTAGCGACAAGTAATTGATAATCATGGCAAATAGCTTTCGGATTAATATTGTCTACTTCCGTTTTTATGATAAATTTAATTAATCATAAAAACGCGCATTATTATTTAGCCAACCTAATGGAAATTGCATAAGTTTTCAATACTACTGTAATACTTGCTAGCTCTAACTCTTGGGGTCTCTATTTCTACAGTAATCCTTTTTATCCTACATACGGTATCCTACACTGTCAGCTACAGTGATCCCATCAGCTACAGTACCTCGTTATCTACAGTACCCCTTTATCGACAGTTTCAAACCTCACCTCCCGTTGTGTTGAACAACTTCTCAATCATTTTTTCATTTTTATTTTTTATCGAATCCAAAAATAATTTCACATGTCTCTTTCCGATTTCCAATGCTTTCGATTCTTGATTTCCCACTTTCAGATGTGGAATTCCTTGAGAAAAACATCCGAAAATGAAGAAGAAAATGAATAGAATAGCAGATTTCATTTTTGAAATCTTCCGAATGCTATTTCGATATCAAAAGAGGCTCTTTTTATAGGCCAAAAATAAGGGATACTAAAATTTGCATATTGTTCAAGGGGGTGGAGTCAGGGTAAACTACGCCCACACATGGAAACAAAAAATATGATAATTTTATGAGAATTTTTTTTGTATTCTTTTTTTCTGTATAAGGGTACTAGCATTATTATTCTTGTGCAAAAAAATTGGAGTTGTGGCCGAATTTTCACCAAGTTAGGCCACCGTATTTCAAGGAGAAATTTCGAAAACACAGCCGGCAAACGAGTGCTACCGTAA</canonical>
            <polymorphic>TCATCCGTTCTTCCTTCCTCATCCGCCAAATAGCCCCGATTTTGCGCCTTCCGATTTCCCCTCATTCAGATCTATGCGACCCTCATTAGCCGAGAACCACTGCGAAAGCCGGGATGAGACCGAAAAATGTGTAGTCGCCTACTTTTGAGTCACAGCCAGTGGAGTTCTTCCACAGCGAAACCCATTCTTAGCGCGGATGTTAGCGACAAGTAATTGATAATCATGGCAAATAGCTTTCGGATTAATATTGTCTACTTCCGTTTTTATGATAAATTTAATTAATCATAAAAACGCGCATTATTATTTAGCCAACCTAATGGAAATTGCATAAGTTTTCAATACTACTGTAATACTTGCTAGCTCTAACTCTTGGGGTCTCTATTTCTACAGTAATCCTTTTTATCCTACATACGGTATCCTACACTGTCAGCTACAGTGATCCCATCAGCTACAGTACCTCGTTATCTACAGTACCCCTTTATCGACAGTTTCAAACCTCYCCTCCCGTTGTGTTGAACAACTTCTCAATCATTTTTTCATTTTTATTTTTTATCGAATCCAAAAATAATTTCACATGTCTCTTTCCGATTTCCAATGCTTTCGATTCTTGATTTCCCACTTTCAGATGTGGAATTCCTTGAGAAAAACATCCGAAAATGAAGAAGAAAATGAATAGAATAGCAGATTTCATTTTTGAAATCTTCCGAATGCTATTTCGATATCAAAAGAGGCTCTTTTTATAGGCCAAAAATAAGGGATACTAAAATTTGCATATTGTTCAAGGGGGTGGAGTCAGGGTAAACTACGCCCACACATGGAAACAAAAAATATGATAATTTTATGAGAATTTTTTTTGTATTCTTTTTTTCTGTATAAGGGTACTAGCATTATTATTCTTGTGCAAAAAAATTGGAGTTGTGGCCGAATTTTCACCAAGTTAGGCCACCGTATTTCAAGGAGAAATTTCGAAAACACAGCCGGCAAACGAGTGCTACCGTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>251 159 99 88 62 61 45 32 29 22 21 19 17 15 13 12 12 12 11 9 9 2</canonical_bands>
                <polymorphic_bands>251 159 99 88 74 61 45 32 29 22 21 19 17 15 13 12 12 11 9 9 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TCAGCTACAGTACCTCGTTATCT</pcr_primer_p1>
		<pcr_primer_p2>AAATGAAATCTGCTATTCTATTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCAGCTACAGTACCTCGTTATCTACAGTACCCCTTTATCGACAGTTTCAAACCTCACCTCCCGTTGTGTTGAACAACTTCTCAATCATTTTTTCATTTTTATTTTTTATCGAATCCAAAAATAATTTCACATGTCTCTTTCCGATTTCCAATGCTTTCGATTCTTGATTTCCCACTTTCAGATGTGGAATTCCTTGAGAAAAACATCCGAAAATGAAGAAGAAAATGAATAGAATAGCAGATTTCATTT</canonical_amplicon>
		<polymorphic_amplicon>TCAGCTACAGTACCTCGTTATCTACAGTACCCCTTTATCGACAGTTTCAAACCTCYCCTCCCGTTGTGTTGAACAACTTCTCAATCATTTTTTCATTTTTATTTTTTATCGAATCCAAAAATAATTTCACATGTCTCTTTCCGATTTCCAATGCTTTCGATTCTTGATTTCCCACTTTCAGATGTGGAATTCCTTGAGAAAAACATCCGAAAATGAAGAAGAAAATGAATAGAATAGCAGATTTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39829</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>1919</contig_pos>
        <strand>-</strand>
        <context>TCTCAATCAT[A/G]TTTTCATTTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CGACAGTTTCAAACCTCACCTCCCGTTGTGTTGAACAACTTCTCAATCAT</left_flank>
        <right_flank>TTTTCATTTTTATTTTTTATCGAATCCAAAAATAATTTCACATGTCTCTT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CCCCGATTTTGCGCCTTCCGATTTCCCCTCATTCAGATCTATGCGACCCTCATTAGCCGAGAACCACTGCGAAAGCCGGGATGAGACCGAAAAATGTGTAGTCGCCTACTTTTGAGTCACAGCCAGTGGAGTTCTTCCACAGCGAAACCCATTCTTAGCGCGGATGTTAGCGACAAGTAATTGATAATCATGGCAAATAGCTTTCGGATTAATATTGTCTACTTCCGTTTTTATGATAAATTTAATTAATCATAAAAACGCGCATTATTATTTAGCCAACCTAATGGAAATTGCATAAGTTTTCAATACTACTGTAATACTTGCTAGCTCTAACTCTTGGGGTCTCTATTTCTACAGTAATCCTTTTTATCCTACATACGGTATCCTACACTGTCAGCTACAGTGATCCCATCAGCTACAGTACCTCGTTATCTACAGTACCCCTTTATCGACAGTTTCAAACCTCACCTCCCGTTGTGTTGAACAACTTCTCAATCATTTTTTCATTTTTATTTTTTATCGAATCCAAAAATAATTTCACATGTCTCTTTCCGATTTCCAATGCTTTCGATTCTTGATTTCCCACTTTCAGATGTGGAATTCCTTGAGAAAAACATCCGAAAATGAAGAAGAAAATGAATAGAATAGCAGATTTCATTTTTGAAATCTTCCGAATGCTATTTCGATATCAAAAGAGGCTCTTTTTATAGGCCAAAAATAAGGGATACTAAAATTTGCATATTGTTCAAGGGGGTGGAGTCAGGGTAAACTACGCCCACACATGGAAACAAAAAATATGATAATTTTATGAGAATTTTTTTTGTATTCTTTTTTTCTGTATAAGGGTACTAGCATTATTATTCTTGTGCAAAAAAATTGGAGTTGTGGCCGAATTTTCACCAAGTTAGGCCACCGTATTTCAAGGAGAAATTTCGAAAACACAGCCGGCAAACGAGTGCTACCGTAACCCAACAATAAATATTTTCGCAAAATGTTTNNN</canonical>
            <polymorphic>CCCCGATTTTGCGCCTTCCGATTTCCCCTCATTCAGATCTATGCGACCCTCATTAGCCGAGAACCACTGCGAAAGCCGGGATGAGACCGAAAAATGTGTAGTCGCCTACTTTTGAGTCACAGCCAGTGGAGTTCTTCCACAGCGAAACCCATTCTTAGCGCGGATGTTAGCGACAAGTAATTGATAATCATGGCAAATAGCTTTCGGATTAATATTGTCTACTTCCGTTTTTATGATAAATTTAATTAATCATAAAAACGCGCATTATTATTTAGCCAACCTAATGGAAATTGCATAAGTTTTCAATACTACTGTAATACTTGCTAGCTCTAACTCTTGGGGTCTCTATTTCTACAGTAATCCTTTTTATCCTACATACGGTATCCTACACTGTCAGCTACAGTGATCCCATCAGCTACAGTACCTCGTTATCTACAGTACCCCTTTATCGACAGTTTCAAACCTCACCTCCCGTTGTGTTGAACAACTTCTCAATCATRTTTTCATTTTTATTTTTTATCGAATCCAAAAATAATTTCACATGTCTCTTTCCGATTTCCAATGCTTTCGATTCTTGATTTCCCACTTTCAGATGTGGAATTCCTTGAGAAAAACATCCGAAAATGAAGAAGAAAATGAATAGAATAGCAGATTTCATTTTTGAAATCTTCCGAATGCTATTTCGATATCAAAAGAGGCTCTTTTTATAGGCCAAAAATAAGGGATACTAAAATTTGCATATTGTTCAAGGGGGTGGAGTCAGGGTAAACTACGCCCACACATGGAAACAAAAAATATGATAATTTTATGAGAATTTTTTTTGTATTCTTTTTTTCTGTATAAGGGTACTAGCATTATTATTCTTGTGCAAAAAAATTGGAGTTGTGGCCGAATTTTCACCAAGTTAGGCCACCGTATTTCAAGGAGAAATTTCGAAAACACAGCCGGCAAACGAGTGCTACCGTAACCCAACAATAAATATTTTCGCAAAATGTTTNNN</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGCTACAGTACCTCGTTATCT</pcr_primer_p1>
		<pcr_primer_p2>AAATGAAATCTGCTATTCTATTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCAGCTACAGTACCTCGTTATCTACAGTACCCCTTTATCGACAGTTTCAAACCTCACCTCCCGTTGTGTTGAACAACTTCTCAATCATTTTTTCATTTTTATTTTTTATCGAATCCAAAAATAATTTCACATGTCTCTTTCCGATTTCCAATGCTTTCGATTCTTGATTTCCCACTTTCAGATGTGGAATTCCTTGAGAAAAACATCCGAAAATGAAGAAGAAAATGAATAGAATAGCAGATTTCATTT</canonical_amplicon>
		<polymorphic_amplicon>TCAGCTACAGTACCTCGTTATCTACAGTACCCCTTTATCGACAGTTTCAAACCTCACCTCCCGTTGTGTTGAACAACTTCTCAATCATRTTTTCATTTTTATTTTTTATCGAATCCAAAAATAATTTCACATGTCTCTTTCCGATTTCCAATGCTTTCGATTCTTGATTTCCCACTTTCAGATGTGGAATTCCTTGAGAAAAACATCCGAAAATGAAGAAGAAAATGAATAGAATAGCAGATTTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39830</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>2002</contig_pos>
        <strand>-</strand>
        <context>TCTTGATTTC[A/G]CACTTTCAGA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TAATTTCACATGTCTCTTTCCGATTTCCAATGCTTTCGATTCTTGATTTC</left_flank>
        <right_flank>CACTTTCAGATGTGGAATTCCTTGAGAAAAACATCCGAAAATGAAGAAGA</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGACCGAAAAATGTGTAGTCGCCTACTTTTGAGTCACAGCCAGTGGAGTTCTTCCACAGCGAAACCCATTCTTAGCGCGGATGTTAGCGACAAGTAATTGATAATCATGGCAAATAGCTTTCGGATTAATATTGTCTACTTCCGTTTTTATGATAAATTTAATTAATCATAAAAACGCGCATTATTATTTAGCCAACCTAATGGAAATTGCATAAGTTTTCAATACTACTGTAATACTTGCTAGCTCTAACTCTTGGGGTCTCTATTTCTACAGTAATCCTTTTTATCCTACATACGGTATCCTACACTGTCAGCTACAGTGATCCCATCAGCTACAGTACCTCGTTATCTACAGTACCCCTTTATCGACAGTTTCAAACCTCACCTCCCGTTGTGTTGAACAACTTCTCAATCATTTTTTCATTTTTATTTTTTATCGAATCCAAAAATAATTTCACATGTCTCTTTCCGATTTCCAATGCTTTCGATTCTTGATTTCCCACTTTCAGATGTGGAATTCCTTGAGAAAAACATCCGAAAATGAAGAAGAAAATGAATAGAATAGCAGATTTCATTTTTGAAATCTTCCGAATGCTATTTCGATATCAAAAGAGGCTCTTTTTATAGGCCAAAAATAAGGGATACTAAAATTTGCATATTGTTCAAGGGGGTGGAGTCAGGGTAAACTACGCCCACACATGGAAACAAAAAATATGATAATTTTATGAGAATTTTTTTTGTATTCTTTTTTTCTGTATAAGGGTACTAGCATTATTATTCTTGTGCAAAAAAATTGGAGTTGTGGCCGAATTTTCACCAAGTTAGGCCACCGTATTTCAAGGAGAAATTTCGAAAACACAGCCGGCAAACGAGTGCTACCGTAACCCAACAATAAATATTTTCGCAAAATGTTTNNNNNNNNNNCATCACGCAATATAACAAGGGATTTGTGCGTCACTTCTCTGTATGTGTACTCTCAATCCAGTTGGGGGGCAGAAGT</canonical>
            <polymorphic>AGACCGAAAAATGTGTAGTCGCCTACTTTTGAGTCACAGCCAGTGGAGTTCTTCCACAGCGAAACCCATTCTTAGCGCGGATGTTAGCGACAAGTAATTGATAATCATGGCAAATAGCTTTCGGATTAATATTGTCTACTTCCGTTTTTATGATAAATTTAATTAATCATAAAAACGCGCATTATTATTTAGCCAACCTAATGGAAATTGCATAAGTTTTCAATACTACTGTAATACTTGCTAGCTCTAACTCTTGGGGTCTCTATTTCTACAGTAATCCTTTTTATCCTACATACGGTATCCTACACTGTCAGCTACAGTGATCCCATCAGCTACAGTACCTCGTTATCTACAGTACCCCTTTATCGACAGTTTCAAACCTCACCTCCCGTTGTGTTGAACAACTTCTCAATCATTTTTTCATTTTTATTTTTTATCGAATCCAAAAATAATTTCACATGTCTCTTTCCGATTTCCAATGCTTTCGATTCTTGATTTCRCACTTTCAGATGTGGAATTCCTTGAGAAAAACATCCGAAAATGAAGAAGAAAATGAATAGAATAGCAGATTTCATTTTTGAAATCTTCCGAATGCTATTTCGATATCAAAAGAGGCTCTTTTTATAGGCCAAAAATAAGGGATACTAAAATTTGCATATTGTTCAAGGGGGTGGAGTCAGGGTAAACTACGCCCACACATGGAAACAAAAAATATGATAATTTTATGAGAATTTTTTTTGTATTCTTTTTTTCTGTATAAGGGTACTAGCATTATTATTCTTGTGCAAAAAAATTGGAGTTGTGGCCGAATTTTCACCAAGTTAGGCCACCGTATTTCAAGGAGAAATTTCGAAAACACAGCCGGCAAACGAGTGCTACCGTAACCCAACAATAAATATTTTCGCAAAATGTTTNNNNNNNNNNCATCACGCAATATAACAAGGGATTTGTGCGTCACTTCTCTGTATGTGTACTCTCAATCCAGTTGGGGGGCAGAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCAGCTACAGTACCTCGTTATCT</pcr_primer_p1>
		<pcr_primer_p2>AAATGAAATCTGCTATTCTATTCA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCAGCTACAGTACCTCGTTATCTACAGTACCCCTTTATCGACAGTTTCAAACCTCACCTCCCGTTGTGTTGAACAACTTCTCAATCATTTTTTCATTTTTATTTTTTATCGAATCCAAAAATAATTTCACATGTCTCTTTCCGATTTCCAATGCTTTCGATTCTTGATTTCCCACTTTCAGATGTGGAATTCCTTGAGAAAAACATCCGAAAATGAAGAAGAAAATGAATAGAATAGCAGATTTCATTT</canonical_amplicon>
		<polymorphic_amplicon>TCAGCTACAGTACCTCGTTATCTACAGTACCCCTTTATCGACAGTTTCAAACCTCACCTCCCGTTGTGTTGAACAACTTCTCAATCATTTTTTCATTTTTATTTTTTATCGAATCCAAAAATAATTTCACATGTCTCTTTCCGATTTCCAATGCTTTCGATTCTTGATTTCRCACTTTCAGATGTGGAATTCCTTGAGAAAAACATCCGAAAATGAAGAAGAAAATGAATAGAATAGCAGATTTCATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39831</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>2081</contig_pos>
        <strand>-</strand>
        <context>ATTTCATTTT[A/G]GAAATCTTCC</context>
        <canonical_base>T</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAACATCCGAAAATGAAGAAGAAAATGAATAGAATAGCAGATTTCATTTT</left_flank>
        <right_flank>GAAATCTTCCGAATGCTATTTCGATATCAAAAGAGGCTCTTTTTATAGGC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GATGTTAGCGACAAGTAATTGATAATCATGGCAAATAGCTTTCGGATTAATATTGTCTACTTCCGTTTTTATGATAAATTTAATTAATCATAAAAACGCGCATTATTATTTAGCCAACCTAATGGAAATTGCATAAGTTTTCAATACTACTGTAATACTTGCTAGCTCTAACTCTTGGGGTCTCTATTTCTACAGTAATCCTTTTTATCCTACATACGGTATCCTACACTGTCAGCTACAGTGATCCCATCAGCTACAGTACCTCGTTATCTACAGTACCCCTTTATCGACAGTTTCAAACCTCACCTCCCGTTGTGTTGAACAACTTCTCAATCATTTTTTCATTTTTATTTTTTATCGAATCCAAAAATAATTTCACATGTCTCTTTCCGATTTCCAATGCTTTCGATTCTTGATTTCCCACTTTCAGATGTGGAATTCCTTGAGAAAAACATCCGAAAATGAAGAAGAAAATGAATAGAATAGCAGATTTCATTTTTGAAATCTTCCGAATGCTATTTCGATATCAAAAGAGGCTCTTTTTATAGGCCAAAAATAAGGGATACTAAAATTTGCATATTGTTCAAGGGGGTGGAGTCAGGGTAAACTACGCCCACACATGGAAACAAAAAATATGATAATTTTATGAGAATTTTTTTTGTATTCTTTTTTTCTGTATAAGGGTACTAGCATTATTATTCTTGTGCAAAAAAATTGGAGTTGTGGCCGAATTTTCACCAAGTTAGGCCACCGTATTTCAAGGAGAAATTTCGAAAACACAGCCGGCAAACGAGTGCTACCGTAACCCAACAATAAATATTTTCGCAAAATGTTTNNNNNNNNNNCATCACGCAATATAACAAGGGATTTGTGCGTCACTTCTCTGTATGTGTACTCTCAATCCAGTTGGGGGGCAGAAGTCAATAGGGCACCCGCGAAAAAAGCGAGAAAAATCGATAAAAAGGAAAAAAATAAGACAAAAATTTTGCGAAAATATTTA</canonical>
            <polymorphic>GATGTTAGCGACAAGTAATTGATAATCATGGCAAATAGCTTTCGGATTAATATTGTCTACTTCCGTTTTTATGATAAATTTAATTAATCATAAAAACGCGCATTATTATTTAGCCAACCTAATGGAAATTGCATAAGTTTTCAATACTACTGTAATACTTGCTAGCTCTAACTCTTGGGGTCTCTATTTCTACAGTAATCCTTTTTATCCTACATACGGTATCCTACACTGTCAGCTACAGTGATCCCATCAGCTACAGTACCTCGTTATCTACAGTACCCCTTTATCGACAGTTTCAAACCTCACCTCCCGTTGTGTTGAACAACTTCTCAATCATTTTTTCATTTTTATTTTTTATCGAATCCAAAAATAATTTCACATGTCTCTTTCCGATTTCCAATGCTTTCGATTCTTGATTTCCCACTTTCAGATGTGGAATTCCTTGAGAAAAACATCCGAAAATGAAGAAGAAAATGAATAGAATAGCAGATTTCATTTTRGAAATCTTCCGAATGCTATTTCGATATCAAAAGAGGCTCTTTTTATAGGCCAAAAATAAGGGATACTAAAATTTGCATATTGTTCAAGGGGGTGGAGTCAGGGTAAACTACGCCCACACATGGAAACAAAAAATATGATAATTTTATGAGAATTTTTTTTGTATTCTTTTTTTCTGTATAAGGGTACTAGCATTATTATTCTTGTGCAAAAAAATTGGAGTTGTGGCCGAATTTTCACCAAGTTAGGCCACCGTATTTCAAGGAGAAATTTCGAAAACACAGCCGGCAAACGAGTGCTACCGTAACCCAACAATAAATATTTTCGCAAAATGTTTNNNNNNNNNNCATCACGCAATATAACAAGGGATTTGTGCGTCACTTCTCTGTATGTGTACTCTCAATCCAGTTGGGGGGCAGAAGTCAATAGGGCACCCGCGAAAAAAGCGAGAAAAATCGATAAAAAGGAAAAAAATAAGACAAAAATTTTGCGAAAATATTTA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGAAAAACATCCGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGCTAGTACCCTTATACAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGAGAAAAACATCCGAAAATGAAGAAGAAAATGAATAGAATAGCAGATTTCATTTTTGAAATCTTCCGAATGCTATTTCGATATCAAAAGAGGCTCTTTTTATAGGCCAAAAATAAGGGATACTAAAATTTGCATATTGTTCAAGGGGGTGGAGTCAGGGTAAACTACGCCCACACATGGAAACAAAAAATATGATAATTTTATGAGAATTTTTTTTGTATTCTTTTTTTCTGTATAAGGGTACTAGCA</canonical_amplicon>
		<polymorphic_amplicon>TTGAGAAAAACATCCGAAAATGAAGAAGAAAATGAATAGAATAGCAGATTTCATTTTRGAAATCTTCCGAATGCTATTTCGATATCAAAAGAGGCTCTTTTTATAGGCCAAAAATAAGGGATACTAAAATTTGCATATTGTTCAAGGGGGTGGAGTCAGGGTAAACTACGCCCACACATGGAAACAAAAAATATGATAATTTTATGAGAATTTTTTTTGTATTCTTTTTTTCTGTATAAGGGTACTAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39832</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>2133</contig_pos>
        <strand>-</strand>
        <context>TTTATAGGCC[C/T]AAAATYAGGG</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>AAATCTTCCGAATGCTATTTCGATATCAAAAGAGGCTCTTTTTATAGGCC</left_flank>
        <right_flank>AAAATAAGGGATACTAAAATTTGCATATTGTTCAAGGGGGTGGAGTCAGG</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTGTCTACTTCCGTTTTTATGATAAATTTAATTAATCATAAAAACGCGCATTATTATTTAGCCAACCTAATGGAAATTGCATAAGTTTTCAATACTACTGTAATACTTGCTAGCTCTAACTCTTGGGGTCTCTATTTCTACAGTAATCCTTTTTATCCTACATACGGTATCCTACACTGTCAGCTACAGTGATCCCATCAGCTACAGTACCTCGTTATCTACAGTACCCCTTTATCGACAGTTTCAAACCTCACCTCCCGTTGTGTTGAACAACTTCTCAATCATTTTTTCATTTTTATTTTTTATCGAATCCAAAAATAATTTCACATGTCTCTTTCCGATTTCCAATGCTTTCGATTCTTGATTTCCCACTTTCAGATGTGGAATTCCTTGAGAAAAACATCCGAAAATGAAGAAGAAAATGAATAGAATAGCAGATTTCATTTTTGAAATCTTCCGAATGCTATTTCGATATCAAAAGAGGCTCTTTTTATAGGCCAAAAATAAGGGATACTAAAATTTGCATATTGTTCAAGGGGGTGGAGTCAGGGTAAACTACGCCCACACATGGAAACAAAAAATATGATAATTTTATGAGAATTTTTTTTGTATTCTTTTTTTCTGTATAAGGGTACTAGCATTATTATTCTTGTGCAAAAAAATTGGAGTTGTGGCCGAATTTTCACCAAGTTAGGCCACCGTATTTCAAGGAGAAATTTCGAAAACACAGCCGGCAAACGAGTGCTACCGTAACCCAACAATAAATATTTTCGCAAAATGTTTNNNNNNNNNNCATCACGCAATATAACAAGGGATTTGTGCGTCACTTCTCTGTATGTGTACTCTCAATCCAGTTGGGGGGCAGAAGTCAATAGGGCACCCGCGAAAAAAGCGAGAAAAATCGATAAAAAGGAAAAAAATAAGACAAAAATTTTGCGAAAATATTTATTGTTGGGTTACGGTAGCACTCGTTTGCCGGCTGTGCTTTCGAAAATTCTCC</canonical>
            <polymorphic>TTGTCTACTTCCGTTTTTATGATAAATTTAATTAATCATAAAAACGCGCATTATTATTTAGCCAACCTAATGGAAATTGCATAAGTTTTCAATACTACTGTAATACTTGCTAGCTCTAACTCTTGGGGTCTCTATTTCTACAGTAATCCTTTTTATCCTACATACGGTATCCTACACTGTCAGCTACAGTGATCCCATCAGCTACAGTACCTCGTTATCTACAGTACCCCTTTATCGACAGTTTCAAACCTCACCTCCCGTTGTGTTGAACAACTTCTCAATCATTTTTTCATTTTTATTTTTTATCGAATCCAAAAATAATTTCACATGTCTCTTTCCGATTTCCAATGCTTTCGATTCTTGATTTCCCACTTTCAGATGTGGAATTCCTTGAGAAAAACATCCGAAAATGAAGAAGAAAATGAATAGAATAGCAGATTTCATTTTTGAAATCTTCCGAATGCTATTTCGATATCAAAAGAGGCTCTTTTTATAGGCCYAAAATAAGGGATACTAAAATTTGCATATTGTTCAAGGGGGTGGAGTCAGGGTAAACTACGCCCACACATGGAAACAAAAAATATGATAATTTTATGAGAATTTTTTTTGTATTCTTTTTTTCTGTATAAGGGTACTAGCATTATTATTCTTGTGCAAAAAAATTGGAGTTGTGGCCGAATTTTCACCAAGTTAGGCCACCGTATTTCAAGGAGAAATTTCGAAAACACAGCCGGCAAACGAGTGCTACCGTAACCCAACAATAAATATTTTCGCAAAATGTTTNNNNNNNNNNCATCACGCAATATAACAAGGGATTTGTGCGTCACTTCTCTGTATGTGTACTCTCAATCCAGTTGGGGGGCAGAAGTCAATAGGGCACCCGCGAAAAAAGCGAGAAAAATCGATAAAAAGGAAAAAAATAAGACAAAAATTTTGCGAAAATATTTATTGTTGGGTTACGGTAGCACTCGTTTGCCGGCTGTGCTTTCGAAAATTCTCC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>WGGCCW</site>
                <isoschizomers>
                    <enzyme>HaeI</enzyme>
                </isoschizomers>
                <canonical_bands>497 305 198</canonical_bands>
                <polymorphic_bands>695 305</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTGAGAAAAACATCCGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGCTAGTACCCTTATACAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGAGAAAAACATCCGAAAATGAAGAAGAAAATGAATAGAATAGCAGATTTCATTTTTGAAATCTTCCGAATGCTATTTCGATATCAAAAGAGGCTCTTTTTATAGGCCAAAAATAAGGGATACTAAAATTTGCATATTGTTCAAGGGGGTGGAGTCAGGGTAAACTACGCCCACACATGGAAACAAAAAATATGATAATTTTATGAGAATTTTTTTTGTATTCTTTTTTTCTGTATAAGGGTACTAGCA</canonical_amplicon>
		<polymorphic_amplicon>TTGAGAAAAACATCCGAAAATGAAGAAGAAAATGAATAGAATAGCAGATTTCATTTTTGAAATCTTCCGAATGCTATTTCGATATCAAAAGAGGCTCTTTTTATAGGCCYAAAATAAGGGATACTAAAATTTGCATATTGTTCAAGGGGGTGGAGTCAGGGTAAACTACGCCCACACATGGAAACAAAAAATATGATAATTTTATGAGAATTTTTTTTGTATTCTTTTTTTCTGTATAAGGGTACTAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39833</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>2139</contig_pos>
        <strand>-</strand>
        <context>GGCCYAAAAT[C/T]AGGGATACTA</context>
        <canonical_base>A</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCCGAATGCTATTTCGATATCAAAAGAGGCTCTTTTTATAGGCCAAAAAT</left_flank>
        <right_flank>AGGGATACTAAAATTTGCATATTGTTCAAGGGGGTGGAGTCAGGGTAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>cp</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ACTTCCGTTTTTATGATAAATTTAATTAATCATAAAAACGCGCATTATTATTTAGCCAACCTAATGGAAATTGCATAAGTTTTCAATACTACTGTAATACTTGCTAGCTCTAACTCTTGGGGTCTCTATTTCTACAGTAATCCTTTTTATCCTACATACGGTATCCTACACTGTCAGCTACAGTGATCCCATCAGCTACAGTACCTCGTTATCTACAGTACCCCTTTATCGACAGTTTCAAACCTCACCTCCCGTTGTGTTGAACAACTTCTCAATCATTTTTTCATTTTTATTTTTTATCGAATCCAAAAATAATTTCACATGTCTCTTTCCGATTTCCAATGCTTTCGATTCTTGATTTCCCACTTTCAGATGTGGAATTCCTTGAGAAAAACATCCGAAAATGAAGAAGAAAATGAATAGAATAGCAGATTTCATTTTTGAAATCTTCCGAATGCTATTTCGATATCAAAAGAGGCTCTTTTTATAGGCCAAAAATAAGGGATACTAAAATTTGCATATTGTTCAAGGGGGTGGAGTCAGGGTAAACTACGCCCACACATGGAAACAAAAAATATGATAATTTTATGAGAATTTTTTTTGTATTCTTTTTTTCTGTATAAGGGTACTAGCATTATTATTCTTGTGCAAAAAAATTGGAGTTGTGGCCGAATTTTCACCAAGTTAGGCCACCGTATTTCAAGGAGAAATTTCGAAAACACAGCCGGCAAACGAGTGCTACCGTAACCCAACAATAAATATTTTCGCAAAATGTTTNNNNNNNNNNCATCACGCAATATAACAAGGGATTTGTGCGTCACTTCTCTGTATGTGTACTCTCAATCCAGTTGGGGGGCAGAAGTCAATAGGGCACCCGCGAAAAAAGCGAGAAAAATCGATAAAAAGGAAAAAAATAAGACAAAAATTTTGCGAAAATATTTATTGTTGGGTTACGGTAGCACTCGTTTGCCGGCTGTGCTTTCGAAAATTCTCCTTGAAA</canonical>
            <polymorphic>ACTTCCGTTTTTATGATAAATTTAATTAATCATAAAAACGCGCATTATTATTTAGCCAACCTAATGGAAATTGCATAAGTTTTCAATACTACTGTAATACTTGCTAGCTCTAACTCTTGGGGTCTCTATTTCTACAGTAATCCTTTTTATCCTACATACGGTATCCTACACTGTCAGCTACAGTGATCCCATCAGCTACAGTACCTCGTTATCTACAGTACCCCTTTATCGACAGTTTCAAACCTCACCTCCCGTTGTGTTGAACAACTTCTCAATCATTTTTTCATTTTTATTTTTTATCGAATCCAAAAATAATTTCACATGTCTCTTTCCGATTTCCAATGCTTTCGATTCTTGATTTCCCACTTTCAGATGTGGAATTCCTTGAGAAAAACATCCGAAAATGAAGAAGAAAATGAATAGAATAGCAGATTTCATTTTTGAAATCTTCCGAATGCTATTTCGATATCAAAAGAGGCTCTTTTTATAGGCCAAAAATYAGGGATACTAAAATTTGCATATTGTTCAAGGGGGTGGAGTCAGGGTAAACTACGCCCACACATGGAAACAAAAAATATGATAATTTTATGAGAATTTTTTTTGTATTCTTTTTTTCTGTATAAGGGTACTAGCATTATTATTCTTGTGCAAAAAAATTGGAGTTGTGGCCGAATTTTCACCAAGTTAGGCCACCGTATTTCAAGGAGAAATTTCGAAAACACAGCCGGCAAACGAGTGCTACCGTAACCCAACAATAAATATTTTCGCAAAATGTTTNNNNNNNNNNCATCACGCAATATAACAAGGGATTTGTGCGTCACTTCTCTGTATGTGTACTCTCAATCCAGTTGGGGGGCAGAAGTCAATAGGGCACCCGCGAAAAAAGCGAGAAAAATCGATAAAAAGGAAAAAAATAAGACAAAAATTTTGCGAAAATATTTATTGTTGGGTTACGGTAGCACTCGTTTGCCGGCTGTGCTTTCGAAAATTCTCCTTGAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAGAAAAACATCCGAAAA</pcr_primer_p1>
		<pcr_primer_p2>TGCTAGTACCCTTATACAGAAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTGAGAAAAACATCCGAAAATGAAGAAGAAAATGAATAGAATAGCAGATTTCATTTTTGAAATCTTCCGAATGCTATTTCGATATCAAAAGAGGCTCTTTTTATAGGCCAAAAATAAGGGATACTAAAATTTGCATATTGTTCAAGGGGGTGGAGTCAGGGTAAACTACGCCCACACATGGAAACAAAAAATATGATAATTTTATGAGAATTTTTTTTGTATTCTTTTTTTCTGTATAAGGGTACTAGCA</canonical_amplicon>
		<polymorphic_amplicon>TTGAGAAAAACATCCGAAAATGAAGAAGAAAATGAATAGAATAGCAGATTTCATTTTTGAAATCTTCCGAATGCTATTTCGATATCAAAAGAGGCTCTTTTTATAGGCCAAAAATYAGGGATACTAAAATTTGCATATTGTTCAAGGGGGTGGAGTCAGGGTAAACTACGCCCACACATGGAAACAAAAAATATGATAATTTTATGAGAATTTTTTTTGTATTCTTTTTTTCTGTATAAGGGTACTAGCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39834</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>13043</contig_pos>
        <strand></strand>
        <context>aaatatttgt[G/T]atactatgat</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>TTGATTCCTGTAAGAGATATCAAAAACACATCAACTGATAAAATATTTGT</left_flank>
        <right_flank>ATACTATGATAAACATTTTATCAGTTGACAATTTTTCGATATCTCTTACA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>ACAAACATTTTACCAGTTGACAAGTTTTTGATATCTCTAATACAAACCGAGATAATTGAGCTTTAAGTGAACGGTTGGGGTGGCTTCTATCAGAGGAAATACGGTAATTCAATTTTTATGTTTTTCTTATTCCTCAAAATTTGAATTCATGTGCCAATAAAAACTTTATTCAAACATATCATAAAACCTTCAATATTCAGAAAAATTATCCAATAACCAGAACAACGTCCACGAACTTTTTCCAGAGGCAAAGTGGCAAACTGGCCACACAGATGATATAATCACTGATGTCTGGCATTTTTCGATGGATTCCACTTTTTTGAATTGCCGCCGACTGAATTTTCCATCCAGAAACGCTGAGGGGATTCTGAAAAAATTTCATTCATAGAAGAAATATACCGTATTTTCTCTAATGCCCATCCAACCCACCTACTTTGAGCTCAATTATCTTGATTCCTGTAAGAGATATCAAAAACACATCAACTGATAAAATATTTGTGATACTATGATAAACATTTTATCAGTTGACAATTTTTCGATATCTCTTACAGAAATCGAGATGATTGAGCTGATGGTTTGGGTGAGCTTATATTACAGGAAATACGGTAAGCGTCCTACCTTGTTCAAATAGAATTTCAATGAACTTCCATTTTTCTGATCTTTTCCATTGATTTTCAGATTCATCTCAAGAGTCCCTTTTTCTTGAAATCAGCAGATTGAATACTGTAATCCATTTTTCCAAAAGTTCCAAAGAATCGATCAAAGTCTTCTTGAGTTTCTGGAATTTTCAGCTTTTTAGGAATTGAAGGAGTACTGTAATTTAAAGATTACTGTAATTTGAAGTTTACTGTAATTTTGAAGTTTCGAAGTTTCAATTTTGAAGTTTCAATTACTAATGTAATTCAAAGGGTACTGTAATTCAAAGATTACTGTAATTTGAAGATTACTGTATCTTTCAAAATTTACCTGTCCCATCCACTGTTATCAATTGCTTCATTGA</canonical>
            <polymorphic>ACAAACATTTTACCAGTTGACAAGTTTTTGATATCTCTAATACAAACCGAGATAATTGAGCTTTAAGTGAACGGTTGGGGTGGCTTCTATCAGAGGAAATACGGTAATTCAATTTTTATGTTTTTCTTATTCCTCAAAATTTGAATTCATGTGCCAATAAAAACTTTATTCAAACATATCATAAAACCTTCAATATTCAGAAAAATTATCCAATAACCAGAACAACGTCCACGAACTTTTTCCAGAGGCAAAGTGGCAAACTGGCCACACAGATGATATAATCACTGATGTCTGGCATTTTTCGATGGATTCCACTTTTTTGAATTGCCGCCGACTGAATTTTCCATCCAGAAACGCTGAGGGGATTCTGAAAAAATTTCATTCATAGAAGAAATATACCGTATTTTCTCTAATGCCCATCCAACCCACCTACTTTGAGCTCAATTATCTTGATTCCTGTAAGAGATATCAAAAACACATCAACTGATAAAATATTTGTKATACTATGATAAACATTTTATCAGTTGACAATTTTTCGATATCTCTTACAGAAATCGAGATGATTGAGCTGATGGTTTGGGTGAGCTTATATTACAGGAAATACGGTAAGCGTCCTACCTTGTTCAAATAGAATTTCAATGAACTTCCATTTTTCTGATCTTTTCCATTGATTTTCAGATTCATCTCAAGAGTCCCTTTTTCTTGAAATCAGCAGATTGAATACTGTAATCCATTTTTCCAAAAGTTCCAAAGAATCGATCAAAGTCTTCTTGAGTTTCTGGAATTTTCAGCTTTTTAGGAATTGAAGGAGTACTGTAATTTAAAGATTACTGTAATTTGAAGTTTACTGTAATTTTGAAGTTTCGAAGTTTCAATTTTGAAGTTTCAATTACTAATGTAATTCAAAGGGTACTGTAATTCAAAGATTACTGTAATTTGAAGATTACTGTATCTTTCAAAATTTACCTGTCCCATCCACTGTTATCAATTGCTTCATTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>395 114 83 78 71 69 49 30 24 23 22 15 13 12 2</canonical_bands>
                <polymorphic_bands>395 114 106 78 71 69 49 30 24 22 15 13 12 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAATTTTCCATCCAGAAAC</pcr_primer_p1>
		<pcr_primer_p2>AATTCTATTTGAACAAGGTAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>TGAATTTTCCATCCAGAAACGCTGAGGGGATTCTGAAAAAATTTCATTCATAGAAGAAATATACCGTATTTTCTCTAATGCCCATCCAACCCACCTACTTTGAGCTCAATTATCTTGATTCCTGTAAGAGATATCAAAAACACATCAACTGATAAAATATTTGTGATACTATGATAAACATTTTATCAGTTGACAATTTTTCGATATCTCTTACAGAAATCGAGATGATTGAGCTGATGGTTTGGGTGAGCTTATATTACAGGAAATACGGTAAGCGTCCTACCTTGTTCAAATAGAATT</canonical_amplicon>
		<polymorphic_amplicon>TGAATTTTCCATCCAGAAACGCTGAGGGGATTCTGAAAAAATTTCATTCATAGAAGAAATATACCGTATTTTCTCTAATGCCCATCCAACCCACCTACTTTGAGCTCAATTATCTTGATTCCTGTAAGAGATATCAAAAACACATCAACTGATAAAATATTTGTKATACTATGATAAACATTTTATCAGTTGACAATTTTTCGATATCTCTTACAGAAATCGAGATGATTGAGCTGATGGTTTGGGTGAGCTTATATTACAGGAAATACGGTAAGCGTCCTACCTTGTTCAAATAGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39835</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>13080</contig_pos>
        <strand></strand>
        <context>gacaattttt[C/T]gatatctctt</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>ATAAAATATTTGTGATACTATGATAAACATTTTATCAGTTGACAATTTTT</left_flank>
        <right_flank>GATATCTCTTACAGAAATCGAGATGATTGAGCTGATGGTTTGGGTGAGCT</right_flank>
        <qual_score>45</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TAATACAAACCGAGATAATTGAGCTTTAAGTGAACGGTTGGGGTGGCTTCTATCAGAGGAAATACGGTAATTCAATTTTTATGTTTTTCTTATTCCTCAAAATTTGAATTCATGTGCCAATAAAAACTTTATTCAAACATATCATAAAACCTTCAATATTCAGAAAAATTATCCAATAACCAGAACAACGTCCACGAACTTTTTCCAGAGGCAAAGTGGCAAACTGGCCACACAGATGATATAATCACTGATGTCTGGCATTTTTCGATGGATTCCACTTTTTTGAATTGCCGCCGACTGAATTTTCCATCCAGAAACGCTGAGGGGATTCTGAAAAAATTTCATTCATAGAAGAAATATACCGTATTTTCTCTAATGCCCATCCAACCCACCTACTTTGAGCTCAATTATCTTGATTCCTGTAAGAGATATCAAAAACACATCAACTGATAAAATATTTGTGATACTATGATAAACATTTTATCAGTTGACAATTTTTCGATATCTCTTACAGAAATCGAGATGATTGAGCTGATGGTTTGGGTGAGCTTATATTACAGGAAATACGGTAAGCGTCCTACCTTGTTCAAATAGAATTTCAATGAACTTCCATTTTTCTGATCTTTTCCATTGATTTTCAGATTCATCTCAAGAGTCCCTTTTTCTTGAAATCAGCAGATTGAATACTGTAATCCATTTTTCCAAAAGTTCCAAAGAATCGATCAAAGTCTTCTTGAGTTTCTGGAATTTTCAGCTTTTTAGGAATTGAAGGAGTACTGTAATTTAAAGATTACTGTAATTTGAAGTTTACTGTAATTTTGAAGTTTCGAAGTTTCAATTTTGAAGTTTCAATTACTAATGTAATTCAAAGGGTACTGTAATTCAAAGATTACTGTAATTTGAAGATTACTGTATCTTTCAAAATTTACCTGTCCCATCCACTGTTATCAATTGCTTCATTGAATCGACATTACCAAAAGTCAGTGCTGCTTGGAAGGCG</canonical>
            <polymorphic>TAATACAAACCGAGATAATTGAGCTTTAAGTGAACGGTTGGGGTGGCTTCTATCAGAGGAAATACGGTAATTCAATTTTTATGTTTTTCTTATTCCTCAAAATTTGAATTCATGTGCCAATAAAAACTTTATTCAAACATATCATAAAACCTTCAATATTCAGAAAAATTATCCAATAACCAGAACAACGTCCACGAACTTTTTCCAGAGGCAAAGTGGCAAACTGGCCACACAGATGATATAATCACTGATGTCTGGCATTTTTCGATGGATTCCACTTTTTTGAATTGCCGCCGACTGAATTTTCCATCCAGAAACGCTGAGGGGATTCTGAAAAAATTTCATTCATAGAAGAAATATACCGTATTTTCTCTAATGCCCATCCAACCCACCTACTTTGAGCTCAATTATCTTGATTCCTGTAAGAGATATCAAAAACACATCAACTGATAAAATATTTGTGATACTATGATAAACATTTTATCAGTTGACAATTTTTYGATATCTCTTACAGAAATCGAGATGATTGAGCTGATGGTTTGGGTGAGCTTATATTACAGGAAATACGGTAAGCGTCCTACCTTGTTCAAATAGAATTTCAATGAACTTCCATTTTTCTGATCTTTTCCATTGATTTTCAGATTCATCTCAAGAGTCCCTTTTTCTTGAAATCAGCAGATTGAATACTGTAATCCATTTTTCCAAAAGTTCCAAAGAATCGATCAAAGTCTTCTTGAGTTTCTGGAATTTTCAGCTTTTTAGGAATTGAAGGAGTACTGTAATTTAAAGATTACTGTAATTTGAAGTTTACTGTAATTTTGAAGTTTCGAAGTTTCAATTTTGAAGTTTCAATTACTAATGTAATTCAAAGGGTACTGTAATTCAAAGATTACTGTAATTTGAAGATTACTGTATCTTTCAAAATTTACCTGTCCCATCCACTGTTATCAATTGCTTCATTGAATCGACATTACCAAAAGTCAGTGCTGCTTGGAAGGCG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>266 234 201 138 108 34 19</canonical_bands>
                <polymorphic_bands>266 253 201 138 108 34</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TGAATTTTCCATCCAGAAAC</pcr_primer_p1>
		<pcr_primer_p2>AATTCTATTTGAACAAGGTAGGAC</pcr_primer_p2>
		<pcr_amplicon_size>300</pcr_amplicon_size>
		<canonical_amplicon>TGAATTTTCCATCCAGAAACGCTGAGGGGATTCTGAAAAAATTTCATTCATAGAAGAAATATACCGTATTTTCTCTAATGCCCATCCAACCCACCTACTTTGAGCTCAATTATCTTGATTCCTGTAAGAGATATCAAAAACACATCAACTGATAAAATATTTGTGATACTATGATAAACATTTTATCAGTTGACAATTTTTCGATATCTCTTACAGAAATCGAGATGATTGAGCTGATGGTTTGGGTGAGCTTATATTACAGGAAATACGGTAAGCGTCCTACCTTGTTCAAATAGAATT</canonical_amplicon>
		<polymorphic_amplicon>TGAATTTTCCATCCAGAAACGCTGAGGGGATTCTGAAAAAATTTCATTCATAGAAGAAATATACCGTATTTTCTCTAATGCCCATCCAACCCACCTACTTTGAGCTCAATTATCTTGATTCCTGTAAGAGATATCAAAAACACATCAACTGATAAAATATTTGTGATACTATGATAAACATTTTATCAGTTGACAATTTTTYGATATCTCTTACAGAAATCGAGATGATTGAGCTGATGGTTTGGGTGAGCTTATATTACAGGAAATACGGTAAGCGTCCTACCTTGTTCAAATAGAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39836</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>13335</contig_pos>
        <strand></strand>
        <context>GAATTTTCAG[C/G]KTTTTAGGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AAAGTTCCAAAGAATCGATCAAAGTCTTCTTGAGTTTCTGGAATTTTCAG</left_flank>
        <right_flank>TTTTTAGGAATTGAAGGAGTACTGTAATTTAAAGATTACTGTAATTTGAA</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGGCATTTTTCGATGGATTCCACTTTTTTGAATTGCCGCCGACTGAATTTTCCATCCAGAAACGCTGAGGGGATTCTGAAAAAATTTCATTCATAGAAGAAATATACCGTATTTTCTCTAATGCCCATCCAACCCACCTACTTTGAGCTCAATTATCTTGATTCCTGTAAGAGATATCAAAAACACATCAACTGATAAAATATTTGTGATACTATGATAAACATTTTATCAGTTGACAATTTTTCGATATCTCTTACAGAAATCGAGATGATTGAGCTGATGGTTTGGGTGAGCTTATATTACAGGAAATACGGTAAGCGTCCTACCTTGTTCAAATAGAATTTCAATGAACTTCCATTTTTCTGATCTTTTCCATTGATTTTCAGATTCATCTCAAGAGTCCCTTTTTCTTGAAATCAGCAGATTGAATACTGTAATCCATTTTTCCAAAAGTTCCAAAGAATCGATCAAAGTCTTCTTGAGTTTCTGGAATTTTCAGCTTTTTAGGAATTGAAGGAGTACTGTAATTTAAAGATTACTGTAATTTGAAGTTTACTGTAATTTTGAAGTTTCGAAGTTTCAATTTTGAAGTTTCAATTACTAATGTAATTCAAAGGGTACTGTAATTCAAAGATTACTGTAATTTGAAGATTACTGTATCTTTCAAAATTTACCTGTCCCATCCACTGTTATCAATTGCTTCATTGAATCGACATTACCAAAAGTCAGTGCTGCTTGGAAGGCGTGCAAGTGGTTCGAGGCTTCAAGAAACGCATCTGAAATGAAATCTGGCCCAGAAGACGTGGCGAAATGGAGGCAGAGGAGAATTAGAAAAATTGGAAGAAGGAATTTCATTTTTTGAGAATGATAGGGACAGGGGGTATTGGAGGCTCTTTTATAGTGGAGAATAATTCGATTAAAACTGAAAAATGGGCGGAGTCAGAATTCTCCTATTTTTTTATGACCTGCGAATTTTCTCTCTTTCCCATTTTGTCGTTTA</canonical>
            <polymorphic>TGGCATTTTTCGATGGATTCCACTTTTTTGAATTGCCGCCGACTGAATTTTCCATCCAGAAACGCTGAGGGGATTCTGAAAAAATTTCATTCATAGAAGAAATATACCGTATTTTCTCTAATGCCCATCCAACCCACCTACTTTGAGCTCAATTATCTTGATTCCTGTAAGAGATATCAAAAACACATCAACTGATAAAATATTTGTGATACTATGATAAACATTTTATCAGTTGACAATTTTTCGATATCTCTTACAGAAATCGAGATGATTGAGCTGATGGTTTGGGTGAGCTTATATTACAGGAAATACGGTAAGCGTCCTACCTTGTTCAAATAGAATTTCAATGAACTTCCATTTTTCTGATCTTTTCCATTGATTTTCAGATTCATCTCAAGAGTCCCTTTTTCTTGAAATCAGCAGATTGAATACTGTAATCCATTTTTCCAAAAGTTCCAAAGAATCGATCAAAGTCTTCTTGAGTTTCTGGAATTTTCAGSTTTTTAGGAATTGAAGGAGTACTGTAATTTAAAGATTACTGTAATTTGAAGTTTACTGTAATTTTGAAGTTTCGAAGTTTCAATTTTGAAGTTTCAATTACTAATGTAATTCAAAGGGTACTGTAATTCAAAGATTACTGTAATTTGAAGATTACTGTATCTTTCAAAATTTACCTGTCCCATCCACTGTTATCAATTGCTTCATTGAATCGACATTACCAAAAGTCAGTGCTGCTTGGAAGGCGTGCAAGTGGTTCGAGGCTTCAAGAAACGCATCTGAAATGAAATCTGGCCCAGAAGACGTGGCGAAATGGAGGCAGAGGAGAATTAGAAAAATTGGAAGAAGGAATTTCATTTTTTGAGAATGATAGGGACAGGGGGTATTGGAGGCTCTTTTATAGTGGAGAATAATTCGATTAAAACTGAAAAATGGGCGGAGTCAGAATTCTCCTATTTTTTTATGACCTGCGAATTTTCTCTCTTTCCCATTTTGTCGTTTA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>501 206 147 129 17</canonical_bands>
                <polymorphic_bands>707 147 129 17</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>262 206 147 129 110 98 31 17</canonical_bands>
                <polymorphic_bands>468 147 129 110 98 31 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAGATTCATCTCAAGAGTC</pcr_primer_p1>
		<pcr_primer_p2>TTGAATTACAGTACCCTTTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAGATTCATCTCAAGAGTCCCTTTTTCTTGAAATCAGCAGATTGAATACTGTAATCCATTTTTCCAAAAGTTCCAAAGAATCGATCAAAGTCTTCTTGAGTTTCTGGAATTTTCAGCTTTTTAGGAATTGAAGGAGTACTGTAATTTAAAGATTACTGTAATTTGAAGTTTACTGTAATTTTGAAGTTTCGAAGTTTCAATTTTGAAGTTTCAATTACTAATGTAATTCAAAGGGTACTGTAATTCAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAGATTCATCTCAAGAGTCCCTTTTTCTTGAAATCAGCAGATTGAATACTGTAATCCATTTTTCCAAAAGTTCCAAAGAATCGATCAAAGTCTTCTTGAGTTTCTGGAATTTTCAGSTTTTTAGGAATTGAAGGAGTACTGTAATTTAAAGATTACTGTAATTTGAAGTTTACTGTAATTTTGAAGTTTCGAAGTTTCAATTTTGAAGTTTCAATTACTAATGTAATTCAAAGGGTACTGTAATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39837</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>13336</contig_pos>
        <strand></strand>
        <context>AATTTTCAGS[T/G]TTTTAGGAAT</context>
        <canonical_base>T</canonical_base>
        <alleles>T/G</alleles>
        <left_flank>AAGTTCCAAAGAATCGATCAAAGTCTTCTTGAGTTTCTGGAATTTTCAGC</left_flank>
        <right_flank>TTTTAGGAATTGAAGGAGTACTGTAATTTAAAGATTACTGTAATTTGAAG</right_flank>
        <qual_score>48</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GGCATTTTTCGATGGATTCCACTTTTTTGAATTGCCGCCGACTGAATTTTCCATCCAGAAACGCTGAGGGGATTCTGAAAAAATTTCATTCATAGAAGAAATATACCGTATTTTCTCTAATGCCCATCCAACCCACCTACTTTGAGCTCAATTATCTTGATTCCTGTAAGAGATATCAAAAACACATCAACTGATAAAATATTTGTGATACTATGATAAACATTTTATCAGTTGACAATTTTTCGATATCTCTTACAGAAATCGAGATGATTGAGCTGATGGTTTGGGTGAGCTTATATTACAGGAAATACGGTAAGCGTCCTACCTTGTTCAAATAGAATTTCAATGAACTTCCATTTTTCTGATCTTTTCCATTGATTTTCAGATTCATCTCAAGAGTCCCTTTTTCTTGAAATCAGCAGATTGAATACTGTAATCCATTTTTCCAAAAGTTCCAAAGAATCGATCAAAGTCTTCTTGAGTTTCTGGAATTTTCAGCTTTTTAGGAATTGAAGGAGTACTGTAATTTAAAGATTACTGTAATTTGAAGTTTACTGTAATTTTGAAGTTTCGAAGTTTCAATTTTGAAGTTTCAATTACTAATGTAATTCAAAGGGTACTGTAATTCAAAGATTACTGTAATTTGAAGATTACTGTATCTTTCAAAATTTACCTGTCCCATCCACTGTTATCAATTGCTTCATTGAATCGACATTACCAAAAGTCAGTGCTGCTTGGAAGGCGTGCAAGTGGTTCGAGGCTTCAAGAAACGCATCTGAAATGAAATCTGGCCCAGAAGACGTGGCGAAATGGAGGCAGAGGAGAATTAGAAAAATTGGAAGAAGGAATTTCATTTTTTGAGAATGATAGGGACAGGGGGTATTGGAGGCTCTTTTATAGTGGAGAATAATTCGATTAAAACTGAAAAATGGGCGGAGTCAGAATTCTCCTATTTTTTTATGACCTGCGAATTTTCTCTCTTTCCCATTTTGTCGTTTAA</canonical>
            <polymorphic>GGCATTTTTCGATGGATTCCACTTTTTTGAATTGCCGCCGACTGAATTTTCCATCCAGAAACGCTGAGGGGATTCTGAAAAAATTTCATTCATAGAAGAAATATACCGTATTTTCTCTAATGCCCATCCAACCCACCTACTTTGAGCTCAATTATCTTGATTCCTGTAAGAGATATCAAAAACACATCAACTGATAAAATATTTGTGATACTATGATAAACATTTTATCAGTTGACAATTTTTCGATATCTCTTACAGAAATCGAGATGATTGAGCTGATGGTTTGGGTGAGCTTATATTACAGGAAATACGGTAAGCGTCCTACCTTGTTCAAATAGAATTTCAATGAACTTCCATTTTTCTGATCTTTTCCATTGATTTTCAGATTCATCTCAAGAGTCCCTTTTTCTTGAAATCAGCAGATTGAATACTGTAATCCATTTTTCCAAAAGTTCCAAAGAATCGATCAAAGTCTTCTTGAGTTTCTGGAATTTTCAGCKTTTTAGGAATTGAAGGAGTACTGTAATTTAAAGATTACTGTAATTTGAAGTTTACTGTAATTTTGAAGTTTCGAAGTTTCAATTTTGAAGTTTCAATTACTAATGTAATTCAAAGGGTACTGTAATTCAAAGATTACTGTAATTTGAAGATTACTGTATCTTTCAAAATTTACCTGTCCCATCCACTGTTATCAATTGCTTCATTGAATCGACATTACCAAAAGTCAGTGCTGCTTGGAAGGCGTGCAAGTGGTTCGAGGCTTCAAGAAACGCATCTGAAATGAAATCTGGCCCAGAAGACGTGGCGAAATGGAGGCAGAGGAGAATTAGAAAAATTGGAAGAAGGAATTTCATTTTTTGAGAATGATAGGGACAGGGGGTATTGGAGGCTCTTTTATAGTGGAGAATAATTCGATTAAAACTGAAAAATGGGCGGAGTCAGAATTCTCCTATTTTTTTATGACCTGCGAATTTTCTCTCTTTCCCATTTTGTCGTTTAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AGCT</site>
                <isoschizomers>
                    <enzyme>AluI</enzyme>
                </isoschizomers>
                <canonical_bands>502 206 146 129 17</canonical_bands>
                <polymorphic_bands>708 146 129 17</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>262 206 146 129 111 98 31 17</canonical_bands>
                <polymorphic_bands>468 146 129 111 98 31 17</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTCAGATTCATCTCAAGAGTC</pcr_primer_p1>
		<pcr_primer_p2>TTGAATTACAGTACCCTTTGAAT</pcr_primer_p2>
		<pcr_amplicon_size>252</pcr_amplicon_size>
		<canonical_amplicon>TTTTCAGATTCATCTCAAGAGTCCCTTTTTCTTGAAATCAGCAGATTGAATACTGTAATCCATTTTTCCAAAAGTTCCAAAGAATCGATCAAAGTCTTCTTGAGTTTCTGGAATTTTCAGCTTTTTAGGAATTGAAGGAGTACTGTAATTTAAAGATTACTGTAATTTGAAGTTTACTGTAATTTTGAAGTTTCGAAGTTTCAATTTTGAAGTTTCAATTACTAATGTAATTCAAAGGGTACTGTAATTCAA</canonical_amplicon>
		<polymorphic_amplicon>TTTTCAGATTCATCTCAAGAGTCCCTTTTTCTTGAAATCAGCAGATTGAATACTGTAATCCATTTTTCCAAAAGTTCCAAAGAATCGATCAAAGTCTTCTTGAGTTTCTGGAATTTTCAGCKTTTTAGGAATTGAAGGAGTACTGTAATTTAAAGATTACTGTAATTTGAAGTTTACTGTAATTTTGAAGTTTCGAAGTTTCAATTTTGAAGTTTCAATTACTAATGTAATTCAAAGGGTACTGTAATTCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39838</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>35303</contig_pos>
        <strand>+</strand>
        <context>TTACTCGATT[C/T]CAAATATGTA</context>
        <canonical_base>T</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCTTGAATTCCAGATTTTCGAAACTACAAAATTTCAGAGTTACTCGATT</left_flank>
        <right_flank>CAAATATGTAAATTTTTTTGTAGAACTTTTGAATCCAGAAAATTGAAATT</right_flank>
        <qual_score>136</qual_score>
        <methods>cpm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCAGCCAAAAACCTTTACTTTTATCCATGTTTATTTTCCTTGTCCTACTTTTGGGAGTTATTATACACACTAACCAGTTCCCCCTCTTTCCCCCTCTTCTCTCCTCCTCCTTCCTCTCCCCCTCCCTTGTGTACGACAATCGCTCTCCTCTCTCTCGGGGCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATCTTTTTTGATTTTTTTGTTGGTGTTTGGGATGGATTTGGAGTGTTGGGGAATGAGATTTTAAATTGTTTCTAACTTTTTTTTGTGGAGAGGTTGAAAATATGGGGAAATGAAAAAAGGAAGTTTTGAAAGCGAAAGCAATTTCTTATTTTTTGAATTTTCGAATTTTCGATTTTTGAATTCCTGAATTTCAAAATTTTGAAATTTTAAGAATTCTTGAATTCCAGATTTTCGAAACTACAAAATTTCAGAGTTACTCGATTTCAAATATGTAAATTTTTTTGTAGAACTTTTGAATCCAGAAAATTGAAATTTAACTATAAAAACTTAAGAAATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAAAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACATTTGAAACATTAGGTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGGCGGCCGACAGCTGACCGAACAAACAATTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTCTATGAATGAGGGGAAATGCCATTTTCTTTGGATTTTTCTAGAAATTTCGACATTTTTTCGAATAAAATTTGTTTCGGATTGTTAACGTTCTTTTTTTTCCCACAGCCGATCATTATTTAGGTTAACATAAACAATTAAAAAACCTGTCTTTTCACATGCTCAACAAATAATAAAAAATCGG</canonical>
            <polymorphic>AATCAGCCAAAAACCTTTACTTTTATCCATGTTTATTTTCCTTGTCCTACTTTTGGGAGTTATTATACACACTAACCAGTTCCCCCTCTTTCCCCCTCTTCTCTCCTCCTCCTTCCTCTCCCCCTCCCTTGTGTACGACAATCGCTCTCCTCTCTCTCGGGGCCTCCTTAGCTCAGTTGGTAGAGCGTGAGACTTTTAATCTTAAGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATCTTTTTTGATTTTTTTGTTGGTGTTTGGGATGGATTTGGAGTGTTGGGGAATGAGATTTTAAATTGTTTCTAACTTTTTTTTGTGGAGAGGTTGAAAATATGGGGAAATGAAAAAAGGAAGTTTTGAAAGCGAAAGCAATTTCTTATTTTTTGAATTTTCGAATTTTCGATTTTTGAATTCCTGAATTTCAAAATTTTGAAATTTTAAGAATTCTTGAATTCCAGATTTTCGAAACTACAAAATTTCAGAGTTACTCGATTYCAAATATGTAAATTTTTTTGTAGAACTTTTGAATCCAGAAAATTGAAATTTAACTATAAAAACTTAAGAAATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAAAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACATTTGAAACATTAGGTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGGCGGCCGACAGCTGACCGAACAAACAATTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTCTATGAATGAGGGGAAATGCCATTTTCTTTGGATTTTTCTAGAAATTTCGACATTTTTTCGAATAAAATTTGTTTCGGATTGTTAACGTTCTTTTTTTTCCCACAGCCGATCATTATTTAGGTTAACATAAACAATTAAAAAACCTGTCTTTTCACATGCTCAACAAATAATAAAAAATCGG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCGAAAGCAATTTCTTATTT</pcr_primer_p1>
		<pcr_primer_p2>TATGGTTTCGTTGAGATGTAACT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AGCGAAAGCAATTTCTTATTTTTTGAATTTTCGAATTTTCGATTTTTGAATTCCTGAATTTCAAAATTTTGAAATTTTAAGAATTCTTGAATTCCAGATTTTCGAAACTACAAAATTTCAGAGTTACTCGATTTCAAATATGTAAATTTTTTTGTAGAACTTTTGAATCCAGAAAATTGAAATTTAACTATAAAAACTTAAGAAATATGCACATTCCAAAAGTTACATCTCAACGAAACCATA</canonical_amplicon>
		<polymorphic_amplicon>AGCGAAAGCAATTTCTTATTTTTTGAATTTTCGAATTTTCGATTTTTGAATTCCTGAATTTCAAAATTTTGAAATTTTAAGAATTCTTGAATTCCAGATTTTCGAAACTACAAAATTTCAGAGTTACTCGATTYCAAATATGTAAATTTTTTTGTAGAACTTTTGAATCCAGAAAATTGAAATTTAACTATAAAAACTTAAGAAATATGCACATTCCAAAAGTTACATCTCAACGAAACCATA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39839</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>35507</contig_pos>
        <strand>+</strand>
        <context>ATTCGGCCAC[A/G]TTTKAAACAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCAC</left_flank>
        <right_flank>TTTGAAACATTAGGTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGC</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATCTTTTTTGATTTTTTTGTTGGTGTTTGGGATGGATTTGGAGTGTTGGGGAATGAGATTTTAAATTGTTTCTAACTTTTTTTTGTGGAGAGGTTGAAAATATGGGGAAATGAAAAAAGGAAGTTTTGAAAGCGAAAGCAATTTCTTATTTTTTGAATTTTCGAATTTTCGATTTTTGAATTCCTGAATTTCAAAATTTTGAAATTTTAAGAATTCTTGAATTCCAGATTTTCGAAACTACAAAATTTCAGAGTTACTCGATTTCAAATATGTAAATTTTTTTGTAGAACTTTTGAATCCAGAAAATTGAAATTTAACTATAAAAACTTAAGAAATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAAAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACATTTGAAACATTAGGTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGGCGGCCGACAGCTGACCGAACAAACAATTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTCTATGAATGAGGGGAAATGCCATTTTCTTTGGATTTTTCTAGAAATTTCGACATTTTTTCGAATAAAATTTGTTTCGGATTGTTAACGTTCTTTTTTTTCCCACAGCCGATCATTATTTAGGTTAACATAAACAATTAAAAAACCTGTCTTTTCACATGCTCAACAAATAATAAAAAATCGGGTCAATGATAAATGCAAACAGTGTAAACTTTTGATAGTAGAACAAAAAAAAAATGAGAGAGATTATTTGGAAGATGAGGAGGTAAACTAGAAACTCAAGTAGAGATTAGAAGAGAATTTAGTAAATAACATGAAAAGTTTTTGGTATAAAAGTGAAGGATGAGCAATGAGAAGGAGCATAGAAGATGCGTTGTGGATTCTTGGT</canonical>
            <polymorphic>AGGTCAGGGGTTCGAGTCCCCTAGGTGGCTTGATCTTTTTTGATTTTTTTGTTGGTGTTTGGGATGGATTTGGAGTGTTGGGGAATGAGATTTTAAATTGTTTCTAACTTTTTTTTGTGGAGAGGTTGAAAATATGGGGAAATGAAAAAAGGAAGTTTTGAAAGCGAAAGCAATTTCTTATTTTTTGAATTTTCGAATTTTCGATTTTTGAATTCCTGAATTTCAAAATTTTGAAATTTTAAGAATTCTTGAATTCCAGATTTTCGAAACTACAAAATTTCAGAGTTACTCGATTTCAAATATGTAAATTTTTTTGTAGAACTTTTGAATCCAGAAAATTGAAATTTAACTATAAAAACTTAAGAAATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAAAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACRTTTGAAACATTAGGTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGGCGGCCGACAGCTGACCGAACAAACAATTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTCTATGAATGAGGGGAAATGCCATTTTCTTTGGATTTTTCTAGAAATTTCGACATTTTTTCGAATAAAATTTGTTTCGGATTGTTAACGTTCTTTTTTTTCCCACAGCCGATCATTATTTAGGTTAACATAAACAATTAAAAAACCTGTCTTTTCACATGCTCAACAAATAATAAAAAATCGGGTCAATGATAAATGCAAACAGTGTAAACTTTTGATAGTAGAACAAAAAAAAAATGAGAGAGATTATTTGGAAGATGAGGAGGTAAACTAGAAACTCAAGTAGAGATTAGAAGAGAATTTAGTAAATAACATGAAAAGTTTTTGGTATAAAAGTGAAGGATGAGCAATGAGAAGGAGCATAGAAGATGCGTTGTGGATTCTTGGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATATGCACATTCCAAAAGTTAC</pcr_primer_p1>
		<pcr_primer_p2>GAATTCTTATACACTCCAAGGAAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>AATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAAAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACATTTGAAACATTAGGTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGGCGGCCGACAGCTGACCGAACAAACAATTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTC</canonical_amplicon>
		<polymorphic_amplicon>AATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAAAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACRTTTGAAACATTAGGTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGGCGGCCGACAGCTGACCGAACAAACAATTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39840</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>35847</contig_pos>
        <strand>+</strand>
        <context>ATAGTAGAAC[G/T]AAAAAAAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATCGGGTCAATGATAAATGCAAACAGTGTAAACTTTTGATAGTAGAAC</left_flank>
        <right_flank>AAAAAAAAATGAGAGAGATTATTTGGAAGATGAGGAGGTAAACTAGAAAC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GAAATTTAACTATAAAAACTTAAGAAATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAAAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACATTTGAAACATTAGGTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGGCGGCCGACAGCTGACCGAACAAACAATTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTCTATGAATGAGGGGAAATGCCATTTTCTTTGGATTTTTCTAGAAATTTCGACATTTTTTCGAATAAAATTTGTTTCGGATTGTTAACGTTCTTTTTTTTCCCACAGCCGATCATTATTTAGGTTAACATAAACAATTAAAAAACCTGTCTTTTCACATGCTCAACAAATAATAAAAAATCGGGTCAATGATAAATGCAAACAGTGTAAACTTTTGATAGTAGAACAAAAAAAAAATGAGAGAGATTATTTGGAAGATGAGGAGGTAAACTAGAAACTCAAGTAGAGATTAGAAGAGAATTTAGTAAATAACATGAAAAGTTTTTGGTATAAAAGTGAAGGATGAGCAATGAGAAGGAGCATAGAAGATGCGTTGTGGATTCTTGGTATTCGCTTTGGTATCGTTGGTGGCTGTTGAGGTGAGATTTTTGGACTTCTCGAATTAAAAAATCTTGGATTTTCGGATTGTAGGACCTAGTCTGGCGGTTCGGTTTGTAACTTTGTTGAAAATTTAAAATTTATTTAGAGTTCAATTTTTAATTCTAGAATTTAAAAAGCTCTACAAAATGGTATAACTTTCAATAAACATGAGACGATAGGGTTTTGAGCAGAATCCAAGGTACTGAAAGGGTAGTACAGACGAGACAGCATCTTTACAGAACCCATAGAAGAGGTTTTAGCGGAAACAATTTTGTGAGATATCAATTTGTAGCTCTAGTCCGGAGCAA</canonical>
            <polymorphic>GAAATTTAACTATAAAAACTTAAGAAATATGCACATTCCAAAAGTTACATCTCAACGAAACCATACAAAAAAGAAAAAAAGAAATGGGCCGAACCGGGGATTGAACCCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCATTCGGCCACATTTGAAACATTAGGTGGAGGCAGTATACGAAGGAGGGTATGGACACCGGCCGGGCGGCCGACAGCTGACCGAACAAACAATTTTTCCTCTCGTTCCTTGGAGTGTATAAGAATTCTATGAATGAGGGGAAATGCCATTTTCTTTGGATTTTTCTAGAAATTTCGACATTTTTTCGAATAAAATTTGTTTCGGATTGTTAACGTTCTTTTTTTTCCCACAGCCGATCATTATTTAGGTTAACATAAACAATTAAAAAACCTGTCTTTTCACATGCTCAACAAATAATAAAAAATCGGGTCAATGATAAATGCAAACAGTGTAAACTTTTGATAGTAGAACKAAAAAAAAATGAGAGAGATTATTTGGAAGATGAGGAGGTAAACTAGAAACTCAAGTAGAGATTAGAAGAGAATTTAGTAAATAACATGAAAAGTTTTTGGTATAAAAGTGAAGGATGAGCAATGAGAAGGAGCATAGAAGATGCGTTGTGGATTCTTGGTATTCGCTTTGGTATCGTTGGTGGCTGTTGAGGTGAGATTTTTGGACTTCTCGAATTAAAAAATCTTGGATTTTCGGATTGTAGGACCTAGTCTGGCGGTTCGGTTTGTAACTTTGTTGAAAATTTAAAATTTATTTAGAGTTCAATTTTTAATTCTAGAATTTAAAAAGCTCTACAAAATGGTATAACTTTCAATAAACATGAGACGATAGGGTTTTGAGCAGAATCCAAGGTACTGAAAGGGTAGTACAGACGAGACAGCATCTTTACAGAACCCATAGAAGAGGTTTTAGCGGAAACAATTTTGTGAGATATCAATTTGTAGCTCTAGTCCGGAGCAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGCCGATCATTATTTAGGTTA</pcr_primer_p1>
		<pcr_primer_p2>TTGCTCATCCTTCACTTTTATAC</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>CAGCCGATCATTATTTAGGTTAACATAAACAATTAAAAAACCTGTCTTTTCACATGCTCAACAAATAATAAAAAATCGGGTCAATGATAAATGCAAACAGTGTAAACTTTTGATAGTAGAACAAAAAAAAAATGAGAGAGATTATTTGGAAGATGAGGAGGTAAACTAGAAACTCAAGTAGAGATTAGAAGAGAATTTAGTAAATAACATGAAAAGTTTTTGGTATAAAAGTGAAGGATGAGCAA</canonical_amplicon>
		<polymorphic_amplicon>CAGCCGATCATTATTTAGGTTAACATAAACAATTAAAAAACCTGTCTTTTCACATGCTCAACAAATAATAAAAAATCGGGTCAATGATAAATGCAAACAGTGTAAACTTTTGATAGTAGAACKAAAAAAAAATGAGAGAGATTATTTGGAAGATGAGGAGGTAAACTAGAAACTCAAGTAGAGATTAGAAGAGAATTTAGTAAATAACATGAAAAGTTTTTGGTATAAAAGTGAAGGATGAGCAA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39841</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>38497</contig_pos>
        <strand>+</strand>
        <context>TCGGGAACTC[A/G]RGGTTTAGAA</context>
        <canonical_base>C</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GATACGGATTCGAAAAATCTTTGTATGGGATACTGAGATTTCGGGAACTC</left_flank>
        <right_flank>AGGTTTAGAAATACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTC</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTCAACCACAACAAATGGTTTGTCAGATGAAGAATAATCAATGCGGATGCCAGCAGAACTATTCACCTTGTGGTGGTGGACAGTGTTGTTTGAAGAAGTAGAGGAATTCGAATGATAATAAGTGTTTTCTGTAAATTTAGGGAACGATTTTTTGTTTTTTGAATTTTATTGTTTGAATGTTTGAAGAAAATGAACTTTTCTTTTCAGAGATTTTGAGATTTTGAGGTTCTTGGATGTGGAGAATCAGAGATTTCGAACTTTAGAAAATTCGAATTTCTGAGATTCTGTGATTCTGAAATTCTGAAATTTGAAACTTTGAATTTCGGATCTTGGGGAATTCTGGTGTAGACTCGGATTTTGAGGTTCTGAAATTCTGCAATTCTGGAATTTTGAGATTCTGAGGTTCAGAGATACGAGGATTCTGGCAATTTCAGATTTTGGGAATTTTAGATACGGATTCGAAAAATCTTTGTATGGGATACTGAGATTTCGGGAACTCCAGGTTTAGAAATACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTGAATGTAGTACAACTTTTACTAGAAAAAAGTAGACAAGTACATTAGCAATTCGAGAAAAAGAGAAAGAAAAAGAAAAAAAAAGGAGTTTACCCTTCAAATGCATATATCGCCCCATATATAATAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTT</canonical>
            <polymorphic>CTCAACCACAACAAATGGTTTGTCAGATGAAGAATAATCAATGCGGATGCCAGCAGAACTATTCACCTTGTGGTGGTGGACAGTGTTGTTTGAAGAAGTAGAGGAATTCGAATGATAATAAGTGTTTTCTGTAAATTTAGGGAACGATTTTTTGTTTTTTGAATTTTATTGTTTGAATGTTTGAAGAAAATGAACTTTTCTTTTCAGAGATTTTGAGATTTTGAGGTTCTTGGATGTGGAGAATCAGAGATTTCGAACTTTAGAAAATTCGAATTTCTGAGATTCTGTGATTCTGAAATTCTGAAATTTGAAACTTTGAATTTCGGATCTTGGGGAATTCTGGTGTAGACTCGGATTTTGAGGTTCTGAAATTCTGCAATTCTGGAATTTTGAGATTCTGAGGTTCAGAGATACGAGGATTCTGGCAATTTCAGATTTTGGGAATTTTAGATACGGATTCGAAAAATCTTTGTATGGGATACTGAGATTTCGGGAACTCRAGGTTTAGAAATACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTGAATGTAGTACAACTTTTACTAGAAAAAAGTAGACAAGTACATTAGCAATTCGAGAAAAAGAGAAAGAAAAAGAAAAAAAAAGGAGTTTACCCTTCAAATGCATATATCGCCCCATATATAATAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCNGG</site>
                <isoschizomers>
                    <enzyme>Bme1390I</enzyme>
                    <enzyme>BssKI</enzyme>
                    <enzyme>BstSCI</enzyme>
                    <enzyme>MspR9I</enzyme>
                    <enzyme>ScrFI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>500 500</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTAGATACGGATTCGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTGGTCCATAAAATTCAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TTTTAGATACGGATTCGAAAAATCTTTGTATGGGATACTGAGATTTCGGGAACTCCAGGTTTAGAAATACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTAGATACGGATTCGAAAAATCTTTGTATGGGATACTGAGATTTCGGGAACTCRAGGTTTAGAAATACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39842</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>38498</contig_pos>
        <strand>+</strand>
        <context>CGGGAACTCR[A/G]GGTTTAGAAW</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ATACGGATTCGAAAAATCTTTGTATGGGATACTGAGATTTCGGGAACTCC</left_flank>
        <right_flank>GGTTTAGAAATACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAACCACAACAAATGGTTTGTCAGATGAAGAATAATCAATGCGGATGCCAGCAGAACTATTCACCTTGTGGTGGTGGACAGTGTTGTTTGAAGAAGTAGAGGAATTCGAATGATAATAAGTGTTTTCTGTAAATTTAGGGAACGATTTTTTGTTTTTTGAATTTTATTGTTTGAATGTTTGAAGAAAATGAACTTTTCTTTTCAGAGATTTTGAGATTTTGAGGTTCTTGGATGTGGAGAATCAGAGATTTCGAACTTTAGAAAATTCGAATTTCTGAGATTCTGTGATTCTGAAATTCTGAAATTTGAAACTTTGAATTTCGGATCTTGGGGAATTCTGGTGTAGACTCGGATTTTGAGGTTCTGAAATTCTGCAATTCTGGAATTTTGAGATTCTGAGGTTCAGAGATACGAGGATTCTGGCAATTTCAGATTTTGGGAATTTTAGATACGGATTCGAAAAATCTTTGTATGGGATACTGAGATTTCGGGAACTCCAGGTTTAGAAATACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTGAATGTAGTACAACTTTTACTAGAAAAAAGTAGACAAGTACATTAGCAATTCGAGAAAAAGAGAAAGAAAAAGAAAAAAAAAGGAGTTTACCCTTCAAATGCATATATCGCCCCATATATAATAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTT</canonical>
            <polymorphic>TCAACCACAACAAATGGTTTGTCAGATGAAGAATAATCAATGCGGATGCCAGCAGAACTATTCACCTTGTGGTGGTGGACAGTGTTGTTTGAAGAAGTAGAGGAATTCGAATGATAATAAGTGTTTTCTGTAAATTTAGGGAACGATTTTTTGTTTTTTGAATTTTATTGTTTGAATGTTTGAAGAAAATGAACTTTTCTTTTCAGAGATTTTGAGATTTTGAGGTTCTTGGATGTGGAGAATCAGAGATTTCGAACTTTAGAAAATTCGAATTTCTGAGATTCTGTGATTCTGAAATTCTGAAATTTGAAACTTTGAATTTCGGATCTTGGGGAATTCTGGTGTAGACTCGGATTTTGAGGTTCTGAAATTCTGCAATTCTGGAATTTTGAGATTCTGAGGTTCAGAGATACGAGGATTCTGGCAATTTCAGATTTTGGGAATTTTAGATACGGATTCGAAAAATCTTTGTATGGGATACTGAGATTTCGGGAACTCCRGGTTTAGAAATACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTGAATGTAGTACAACTTTTACTAGAAAAAAGTAGACAAGTACATTAGCAATTCGAGAAAAAGAGAAAGAAAAAGAAAAAAAAAGGAGTTTACCCTTCAAATGCATATATCGCCCCATATATAATAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCWGG</site>
                <isoschizomers>
                    <enzyme>BseBI</enzyme>
                    <enzyme>BsiLI</enzyme>
                    <enzyme>Bst2UI</enzyme>
                    <enzyme>BstNI</enzyme>
                    <enzyme>BstOI</enzyme>
                    <enzyme>EcoRII</enzyme>
                    <enzyme>MvaI</enzyme>
                    <enzyme>Psp6I</enzyme>
                    <enzyme>PspGI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTTTAGATACGGATTCGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTGGTCCATAAAATTCAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TTTTAGATACGGATTCGAAAAATCTTTGTATGGGATACTGAGATTTCGGGAACTCCAGGTTTAGAAATACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTAGATACGGATTCGAAAAATCTTTGTATGGGATACTGAGATTTCGGGAACTCCRGGTTTAGAAATACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39843</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>38508</contig_pos>
        <strand>+</strand>
        <context>RGGTTTAGAA[A/T]TACTAGGCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAAAAATCTTTGTATGGGATACTGAGATTTCGGGAACTCCAGGTTTAGAA</left_flank>
        <right_flank>TACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAA</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CAAATGGTTTGTCAGATGAAGAATAATCAATGCGGATGCCAGCAGAACTATTCACCTTGTGGTGGTGGACAGTGTTGTTTGAAGAAGTAGAGGAATTCGAATGATAATAAGTGTTTTCTGTAAATTTAGGGAACGATTTTTTGTTTTTTGAATTTTATTGTTTGAATGTTTGAAGAAAATGAACTTTTCTTTTCAGAGATTTTGAGATTTTGAGGTTCTTGGATGTGGAGAATCAGAGATTTCGAACTTTAGAAAATTCGAATTTCTGAGATTCTGTGATTCTGAAATTCTGAAATTTGAAACTTTGAATTTCGGATCTTGGGGAATTCTGGTGTAGACTCGGATTTTGAGGTTCTGAAATTCTGCAATTCTGGAATTTTGAGATTCTGAGGTTCAGAGATACGAGGATTCTGGCAATTTCAGATTTTGGGAATTTTAGATACGGATTCGAAAAATCTTTGTATGGGATACTGAGATTTCGGGAACTCCAGGTTTAGAAATACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTGAATGTAGTACAACTTTTACTAGAAAAAAGTAGACAAGTACATTAGCAATTCGAGAAAAAGAGAAAGAAAAAGAAAAAAAAAGGAGTTTACCCTTCAAATGCATATATCGCCCCATATATAATAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTT</canonical>
            <polymorphic>CAAATGGTTTGTCAGATGAAGAATAATCAATGCGGATGCCAGCAGAACTATTCACCTTGTGGTGGTGGACAGTGTTGTTTGAAGAAGTAGAGGAATTCGAATGATAATAAGTGTTTTCTGTAAATTTAGGGAACGATTTTTTGTTTTTTGAATTTTATTGTTTGAATGTTTGAAGAAAATGAACTTTTCTTTTCAGAGATTTTGAGATTTTGAGGTTCTTGGATGTGGAGAATCAGAGATTTCGAACTTTAGAAAATTCGAATTTCTGAGATTCTGTGATTCTGAAATTCTGAAATTTGAAACTTTGAATTTCGGATCTTGGGGAATTCTGGTGTAGACTCGGATTTTGAGGTTCTGAAATTCTGCAATTCTGGAATTTTGAGATTCTGAGGTTCAGAGATACGAGGATTCTGGCAATTTCAGATTTTGGGAATTTTAGATACGGATTCGAAAAATCTTTGTATGGGATACTGAGATTTCGGGAACTCCAGGTTTAGAAWTACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTGAATGTAGTACAACTTTTACTAGAAAAAAGTAGACAAGTACATTAGCAATTCGAGAAAAAGAGAAAGAAAAAGAAAAAAAAAGGAGTTTACCCTTCAAATGCATATATCGCCCCATATATAATAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTAGATACGGATTCGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTGGTCCATAAAATTCAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TTTTAGATACGGATTCGAAAAATCTTTGTATGGGATACTGAGATTTCGGGAACTCCAGGTTTAGAAATACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTAGATACGGATTCGAAAAATCTTTGTATGGGATACTGAGATTTCGGGAACTCCAGGTTTAGAAWTACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39844</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>38548</contig_pos>
        <strand></strand>
        <context>TCAGAAATTC[A/G]RAAATTCAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AGGTTTAGAAATACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTC</left_flank>
        <right_flank>AAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAA</right_flank>
        <qual_score>32</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGCAGAACTATTCACCTTGTGGTGGTGGACAGTGTTGTTTGAAGAAGTAGAGGAATTCGAATGATAATAAGTGTTTTCTGTAAATTTAGGGAACGATTTTTTGTTTTTTGAATTTTATTGTTTGAATGTTTGAAGAAAATGAACTTTTCTTTTCAGAGATTTTGAGATTTTGAGGTTCTTGGATGTGGAGAATCAGAGATTTCGAACTTTAGAAAATTCGAATTTCTGAGATTCTGTGATTCTGAAATTCTGAAATTTGAAACTTTGAATTTCGGATCTTGGGGAATTCTGGTGTAGACTCGGATTTTGAGGTTCTGAAATTCTGCAATTCTGGAATTTTGAGATTCTGAGGTTCAGAGATACGAGGATTCTGGCAATTTCAGATTTTGGGAATTTTAGATACGGATTCGAAAAATCTTTGTATGGGATACTGAGATTTCGGGAACTCCAGGTTTAGAAATACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTGAATGTAGTACAACTTTTACTAGAAAAAAGTAGACAAGTACATTAGCAATTCGAGAAAAAGAGAAAGAAAAAGAAAAAAAAAGGAGTTTACCCTTCAAATGCATATATCGCCCCATATATAATAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGA</canonical>
            <polymorphic>AGCAGAACTATTCACCTTGTGGTGGTGGACAGTGTTGTTTGAAGAAGTAGAGGAATTCGAATGATAATAAGTGTTTTCTGTAAATTTAGGGAACGATTTTTTGTTTTTTGAATTTTATTGTTTGAATGTTTGAAGAAAATGAACTTTTCTTTTCAGAGATTTTGAGATTTTGAGGTTCTTGGATGTGGAGAATCAGAGATTTCGAACTTTAGAAAATTCGAATTTCTGAGATTCTGTGATTCTGAAATTCTGAAATTTGAAACTTTGAATTTCGGATCTTGGGGAATTCTGGTGTAGACTCGGATTTTGAGGTTCTGAAATTCTGCAATTCTGGAATTTTGAGATTCTGAGGTTCAGAGATACGAGGATTCTGGCAATTTCAGATTTTGGGAATTTTAGATACGGATTCGAAAAATCTTTGTATGGGATACTGAGATTTCGGGAACTCCAGGTTTAGAAATACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCRAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTGAATGTAGTACAACTTTTACTAGAAAAAAGTAGACAAGTACATTAGCAATTCGAGAAAAAGAGAAAGAAAAAGAAAAAAAAAGGAGTTTACCCTTCAAATGCATATATCGCCCCATATATAATAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTAGATACGGATTCGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTGGTCCATAAAATTCAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TTTTAGATACGGATTCGAAAAATCTTTGTATGGGATACTGAGATTTCGGGAACTCCAGGTTTAGAAATACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTAGATACGGATTCGAAAAATCTTTGTATGGGATACTGAGATTTCGGGAACTCCAGGTTTAGAAATACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCRAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39845</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>38549</contig_pos>
        <strand></strand>
        <context>CAGAAATTCR[A/G]AAATTCAAAT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>GGTTTAGAAATACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCA</left_flank>
        <right_flank>AAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAA</right_flank>
        <qual_score>34</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCAGAACTATTCACCTTGTGGTGGTGGACAGTGTTGTTTGAAGAAGTAGAGGAATTCGAATGATAATAAGTGTTTTCTGTAAATTTAGGGAACGATTTTTTGTTTTTTGAATTTTATTGTTTGAATGTTTGAAGAAAATGAACTTTTCTTTTCAGAGATTTTGAGATTTTGAGGTTCTTGGATGTGGAGAATCAGAGATTTCGAACTTTAGAAAATTCGAATTTCTGAGATTCTGTGATTCTGAAATTCTGAAATTTGAAACTTTGAATTTCGGATCTTGGGGAATTCTGGTGTAGACTCGGATTTTGAGGTTCTGAAATTCTGCAATTCTGGAATTTTGAGATTCTGAGGTTCAGAGATACGAGGATTCTGGCAATTTCAGATTTTGGGAATTTTAGATACGGATTCGAAAAATCTTTGTATGGGATACTGAGATTTCGGGAACTCCAGGTTTAGAAATACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTGAATGTAGTACAACTTTTACTAGAAAAAAGTAGACAAGTACATTAGCAATTCGAGAAAAAGAGAAAGAAAAAGAAAAAAAAAGGAGTTTACCCTTCAAATGCATATATCGCCCCATATATAATAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAA</canonical>
            <polymorphic>GCAGAACTATTCACCTTGTGGTGGTGGACAGTGTTGTTTGAAGAAGTAGAGGAATTCGAATGATAATAAGTGTTTTCTGTAAATTTAGGGAACGATTTTTTGTTTTTTGAATTTTATTGTTTGAATGTTTGAAGAAAATGAACTTTTCTTTTCAGAGATTTTGAGATTTTGAGGTTCTTGGATGTGGAGAATCAGAGATTTCGAACTTTAGAAAATTCGAATTTCTGAGATTCTGTGATTCTGAAATTCTGAAATTTGAAACTTTGAATTTCGGATCTTGGGGAATTCTGGTGTAGACTCGGATTTTGAGGTTCTGAAATTCTGCAATTCTGGAATTTTGAGATTCTGAGGTTCAGAGATACGAGGATTCTGGCAATTTCAGATTTTGGGAATTTTAGATACGGATTCGAAAAATCTTTGTATGGGATACTGAGATTTCGGGAACTCCAGGTTTAGAAATACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCARAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTGAATGTAGTACAACTTTTACTAGAAAAAAGTAGACAAGTACATTAGCAATTCGAGAAAAAGAGAAAGAAAAAGAAAAAAAAAGGAGTTTACCCTTCAAATGCATATATCGCCCCATATATAATAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTAGATACGGATTCGAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>GTGGTCCATAAAATTCAGAAAA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>TTTTAGATACGGATTCGAAAAATCTTTGTATGGGATACTGAGATTTCGGGAACTCCAGGTTTAGAAATACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTAGATACGGATTCGAAAAATCTTTGTATGGGATACTGAGATTTCGGGAACTCCAGGTTTAGAAATACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCARAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39846</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>38589</contig_pos>
        <strand></strand>
        <context>CGAAAATTCG[A/G]ATGTTCaaaa</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>CAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCG</left_flank>
        <right_flank>ATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGT</right_flank>
        <qual_score>38</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AAGAAGTAGAGGAATTCGAATGATAATAAGTGTTTTCTGTAAATTTAGGGAACGATTTTTTGTTTTTTGAATTTTATTGTTTGAATGTTTGAAGAAAATGAACTTTTCTTTTCAGAGATTTTGAGATTTTGAGGTTCTTGGATGTGGAGAATCAGAGATTTCGAACTTTAGAAAATTCGAATTTCTGAGATTCTGTGATTCTGAAATTCTGAAATTTGAAACTTTGAATTTCGGATCTTGGGGAATTCTGGTGTAGACTCGGATTTTGAGGTTCTGAAATTCTGCAATTCTGGAATTTTGAGATTCTGAGGTTCAGAGATACGAGGATTCTGGCAATTTCAGATTTTGGGAATTTTAGATACGGATTCGAAAAATCTTTGTATGGGATACTGAGATTTCGGGAACTCCAGGTTTAGAAATACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTGAATGTAGTACAACTTTTACTAGAAAAAAGTAGACAAGTACATTAGCAATTCGAGAAAAAGAGAAAGAAAAAGAAAAAAAAAGGAGTTTACCCTTCAAATGCATATATCGCCCCATATATAATAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAAAATTGAATGTTCAAATTCCCGTTATTTTTTTGAATTTGTC</canonical>
            <polymorphic>AAGAAGTAGAGGAATTCGAATGATAATAAGTGTTTTCTGTAAATTTAGGGAACGATTTTTTGTTTTTTGAATTTTATTGTTTGAATGTTTGAAGAAAATGAACTTTTCTTTTCAGAGATTTTGAGATTTTGAGGTTCTTGGATGTGGAGAATCAGAGATTTCGAACTTTAGAAAATTCGAATTTCTGAGATTCTGTGATTCTGAAATTCTGAAATTTGAAACTTTGAATTTCGGATCTTGGGGAATTCTGGTGTAGACTCGGATTTTGAGGTTCTGAAATTCTGCAATTCTGGAATTTTGAGATTCTGAGGTTCAGAGATACGAGGATTCTGGCAATTTCAGATTTTGGGAATTTTAGATACGGATTCGAAAAATCTTTGTATGGGATACTGAGATTTCGGGAACTCCAGGTTTAGAAATACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGRATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTGAATGTAGTACAACTTTTACTAGAAAAAAGTAGACAAGTACATTAGCAATTCGAGAAAAAGAGAAAGAAAAAGAAAAAAAAAGGAGTTTACCCTTCAAATGCATATATCGCCCCATATATAATAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAAAATTGAATGTTCAAATTCCCGTTATTTTTTTGAATTTGTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TTCGAA</site>
                <isoschizomers>
                    <enzyme>AsuII</enzyme>
                    <enzyme>Bpu14I</enzyme>
                    <enzyme>BsiCI</enzyme>
                    <enzyme>Bsp119I</enzyme>
                    <enzyme>BspT104I</enzyme>
                    <enzyme>BstBI</enzyme>
                    <enzyme>Csp45I</enzyme>
                    <enzyme>LspI</enzyme>
                    <enzyme>NspV</enzyme>
                    <enzyme>SfuI</enzyme>
                </isoschizomers>
                <canonical_bands>503 190 145 122 16 16 8</canonical_bands>
                <polymorphic_bands>511 190 145 122 16 16</polymorphic_bands>
            </assay>
            <assay>
                <site>TCGA</site>
                <isoschizomers>
                    <enzyme>EsaBC3I</enzyme>
                    <enzyme>TaqI</enzyme>
                    <enzyme>TthHB8I</enzyme>
                </isoschizomers>
                <canonical_bands>279 223 190 145 74 48 17 16 8</canonical_bands>
                <polymorphic_bands>279 231 190 145 74 48 17 16</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TACTAGGCAAAAACTCAAAACTC</pcr_primer_p1>
		<pcr_primer_p2>CAAATGGAAAGAAGTAGAACAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTG</canonical_amplicon>
		<polymorphic_amplicon>TACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGRATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39847</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>38697</contig_pos>
        <strand>+</strand>
        <context>GTCATTTTTT[A/T]CAACTTTCAA</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>AATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTT</left_flank>
        <right_flank>CAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTCAGAGATTTTGAGATTTTGAGGTTCTTGGATGTGGAGAATCAGAGATTTCGAACTTTAGAAAATTCGAATTTCTGAGATTCTGTGATTCTGAAATTCTGAAATTTGAAACTTTGAATTTCGGATCTTGGGGAATTCTGGTGTAGACTCGGATTTTGAGGTTCTGAAATTCTGCAATTCTGGAATTTTGAGATTCTGAGGTTCAGAGATACGAGGATTCTGGCAATTTCAGATTTTGGGAATTTTAGATACGGATTCGAAAAATCTTTGTATGGGATACTGAGATTTCGGGAACTCCAGGTTTAGAAATACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTGAATGTAGTACAACTTTTACTAGAAAAAAGTAGACAAGTACATTAGCAATTCGAGAAAAAGAGAAAGAAAAAGAAAAAAAAAGGAGTTTACCCTTCAAATGCATATATCGCCCCATATATAATAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAAAATTGAATGTTCAAATTCCCGTTATTTTTTTGAATTTGTCTTTTCACGCTCTCCCACAGAACAATTCGAAACTGCAAATTAATTTTTGATCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAGAA</canonical>
            <polymorphic>TTTTCAGAGATTTTGAGATTTTGAGGTTCTTGGATGTGGAGAATCAGAGATTTCGAACTTTAGAAAATTCGAATTTCTGAGATTCTGTGATTCTGAAATTCTGAAATTTGAAACTTTGAATTTCGGATCTTGGGGAATTCTGGTGTAGACTCGGATTTTGAGGTTCTGAAATTCTGCAATTCTGGAATTTTGAGATTCTGAGGTTCAGAGATACGAGGATTCTGGCAATTTCAGATTTTGGGAATTTTAGATACGGATTCGAAAAATCTTTGTATGGGATACTGAGATTTCGGGAACTCCAGGTTTAGAAATACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTTWCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTGAATGTAGTACAACTTTTACTAGAAAAAAGTAGACAAGTACATTAGCAATTCGAGAAAAAGAGAAAGAAAAAGAAAAAAAAAGGAGTTTACCCTTCAAATGCATATATCGCCCCATATATAATAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAAAATTGAATGTTCAAATTCCCGTTATTTTTTTGAATTTGTCTTTTCACGCTCTCCCACAGAACAATTCGAAACTGCAAATTAATTTTTGATCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAGAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TACTAGGCAAAAACTCAAAACTC</pcr_primer_p1>
		<pcr_primer_p2>CAAATGGAAAGAAGTAGAACAAG</pcr_primer_p2>
		<pcr_amplicon_size>251</pcr_amplicon_size>
		<canonical_amplicon>TACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTG</canonical_amplicon>
		<polymorphic_amplicon>TACTAGGCAAAAACTCAAAACTCGAAAGTTCAGAAATTCAAAAATTCAAATATTCAAATATTCAAATATTCGAAAATTCGAATGTTCAAAATTTTAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTTWCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39848</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>39102</contig_pos>
        <strand>+</strand>
        <context>TTCACGCTCT[C/T]CCACAGAACA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTGAATGTTCAAATTCCCGTTATTTTTTTGAATTTGTCTTTTCACGCTCT</left_flank>
        <right_flank>CCACAGAACAATTCGAAACTGCAAATTAATTTTTGATCTACAGAAAAAAA</right_flank>
        <qual_score>138</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTGAATGTAGTACAACTTTTACTAGAAAAAAGTAGACAAGTACATTAGCAATTCGAGAAAAAGAGAAAGAAAAAGAAAAAAAAAGGAGTTTACCCTTCAAATGCATATATCGCCCCATATATAATAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAAAATTGAATGTTCAAATTCCCGTTATTTTTTTGAATTTGTCTTTTCACGCTCTCCCACAGAACAATTCGAAACTGCAAATTAATTTTTGATCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGTTCCAAGATGATTCAAATGATTCTTAAAAAATTAATAAGTGGTTATAGATTCATCTATGGTCCTTTTCCGGAAGAAAAAATGTCAAAAATGGTCATTTTTGAAAGTTTTTTACAGGAAAAAAATCTATCTCCTCTTTCAGTTTTTGACATTTCTAGGAGTTTTATAGCTCAAAAAAACCGCAATTATTTTCTCTACATTTTCTATTCATGGATTTTTAATTTGTCTGATAAAACTTTTTTTGTAATCAAAAAACAACGCAAAAATGCTATTTTGTGCAATTTCATGAGGTTTTTGAATTATAAAAAAAGTTTTATCAGACGAATTAAATAATTCATCCATAGAAAATGTAGAGAAAATAATTGCGGTTCTGTCTATTGTTGCG</canonical>
            <polymorphic>TAAAATTATTTTTTTTGTGAATTTTTGAATTTCGCGTTTTCCGAAATTTTGATTTTTTTTTCTGAATTTTATGGACCACCATAAGTCATTTTTTTCAACTTTCAAATTTACGTATGACTACACTTTTTTGTTCTCTTGTTCTACTTCTTTCCATTTGAATGTAGTACAACTTTTACTAGAAAAAAGTAGACAAGTACATTAGCAATTCGAGAAAAAGAGAAAGAAAAAGAAAAAAAAAGGAGTTTACCCTTCAAATGCATATATCGCCCCATATATAATAGTTCTGGATGAAGAAAGAAAGGAAGGAAAAAAGACAAAAAACATATTTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAAAATTGAATGTTCAAATTCCCGTTATTTTTTTGAATTTGTCTTTTCACGCTCTYCCACAGAACAATTCGAAACTGCAAATTAATTTTTGATCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAACCATAATTTCAGAATTTTTTATCTGATTTTGTGGAGTTCCAAGATGATTCAAATGATTCTTAAAAAATTAATAAGTGGTTATAGATTCATCTATGGTCCTTTTCCGGAAGAAAAAATGTCAAAAATGGTCATTTTTGAAAGTTTTTTACAGGAAAAAAATCTATCTCCTCTTTCAGTTTTTGACATTTCTAGGAGTTTTATAGCTCAAAAAAACCGCAATTATTTTCTCTACATTTTCTATTCATGGATTTTTAATTTGTCTGATAAAACTTTTTTTGTAATCAAAAAACAACGCAAAAATGCTATTTTGTGCAATTTCATGAGGTTTTTGAATTATAAAAAAAGTTTTATCAGACGAATTAAATAATTCATCCATAGAAAATGTAGAGAAAATAATTGCGGTTCTGTCTATTGTTGCG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTTTCTTTGTTTTCTCGTCAA</pcr_primer_p1>
		<pcr_primer_p2>GTTTTAGACCTGCAATTGTGAT</pcr_primer_p2>
		<pcr_amplicon_size>256</pcr_amplicon_size>
		<canonical_amplicon>TTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAAAATTGAATGTTCAAATTCCCGTTATTTTTTTGAATTTGTCTTTTCACGCTCTCCCACAGAACAATTCGAAACTGCAAATTAATTTTTGATCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAAC</canonical_amplicon>
		<polymorphic_amplicon>TTTTCTTTGTTTTCTCGTCAAAATTTTTCTAATTAGAAAAACAGTTTTTTTCGCCGAGAGCGAGTTTTTTTGTTGCTTTTTGAGGTCTCTACTCTTTTCTGAGAACATATGTTTCTTTGAAAATTGAATGTTCAAATTCCCGTTATTTTTTTGAATTTGTCTTTTCACGCTCTYCCACAGAACAATTCGAAACTGCAAATTAATTTTTGATCTACAGAAAAAAAGTTTGGCGCGATCACAATTGCAGGTCTAAAAC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39849</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>40610</contig_pos>
        <strand></strand>
        <context>TTTCCATTCC[C/T]GGTGCTTCCG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CGGAATTTTCGGCTTTTTTTTTCTGGAGGACCCAACCAATTTTCCATTCC</left_flank>
        <right_flank>GGTGCTTCCGTTTTTTTGTTCTTCTCTTTTTCCAAAACTTTGAAGTTTTC</right_flank>
        <qual_score>42</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TGAATTTCTGACTTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGACTTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCGAATTTTTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCAGAATTTCTGAATCTCTGAATTTCAGAATTTCTGAATCTCTGAATTTCAGAATTTCTGAATTTCAGAATTTCTGAATCTCTGAATTTCAGAATTTCTGAATCTCTGAATTCCTGATTTTTATTTTTTTTCAGAAATTGAGAGTGTTTCGAGAAATGTGGGCGGAGCTTCGGGAAAAACTTGAAGAATGTTCTGGAATATTATCTCCCATTGCTCATTTTAAATTTTCACTTGTTTTTCATCCGGAATTTTCGGCTTTTTTTTTCTGGAGGACCCAACCAATTTTCCATTCCCGGTGCTTCCGTTTTTTTGTTCTTCTCTTTTTCCAAAACTTTGAAGTTTTCACCCATTTTTCTTTTCCTTTTTTTGAAAATGTCCCATAAATTTTTTTGCTGCAAAAGGCAAAAAAATTCTGGGAACCTAAAATTCAAGTGGAGAAAAAAAAATTTTGTTAAGAAGTGAGAGGAAGAAAAGCATTTGGGATACTTGAGAAATGGAGAAAATTTGTATTCTGGAGAGGTTCTCTTTTTTTTGAGTTTTGAATTAAATTTGAATTTAGCTGAGTAAGGAAGGAAGTAAGTTTGGGAATTCTAGAAGATTCAAACTATTTGGATCTCAGAAATTTCAAAATTTCCATAAAAAATTTATATAAAATTCTACAAATTAATATAAAATTCTAGAAATTCTAGAAATTCTGAAATTCTAGAAATTCTGAAATTCTGAAATTCTGAAAATCTGAAAATCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAGTTCTGAAATTCTG</canonical>
            <polymorphic>TGAATTTCTGACTTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGACTTTCTGAATTTCTGAATTTTTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCCGAATTTTTGAATTTCTGAATTTCTGAATTTCAGAATTTCTGAATTTCAGAATTTCTGAATCTCTGAATTTCAGAATTTCTGAATCTCTGAATTTCAGAATTTCTGAATTTCAGAATTTCTGAATCTCTGAATTTCAGAATTTCTGAATCTCTGAATTCCTGATTTTTATTTTTTTTCAGAAATTGAGAGTGTTTCGAGAAATGTGGGCGGAGCTTCGGGAAAAACTTGAAGAATGTTCTGGAATATTATCTCCCATTGCTCATTTTAAATTTTCACTTGTTTTTCATCCGGAATTTTCGGCTTTTTTTTTCTGGAGGACCCAACCAATTTTCCATTCCYGGTGCTTCCGTTTTTTTGTTCTTCTCTTTTTCCAAAACTTTGAAGTTTTCACCCATTTTTCTTTTCCTTTTTTTGAAAATGTCCCATAAATTTTTTTGCTGCAAAAGGCAAAAAAATTCTGGGAACCTAAAATTCAAGTGGAGAAAAAAAAATTTTGTTAAGAAGTGAGAGGAAGAAAAGCATTTGGGATACTTGAGAAATGGAGAAAATTTGTATTCTGGAGAGGTTCTCTTTTTTTTGAGTTTTGAATTAAATTTGAATTTAGCTGAGTAAGGAAGGAAGTAAGTTTGGGAATTCTAGAAGATTCAAACTATTTGGATCTCAGAAATTTCAAAATTTCCATAAAAAATTTATATAAAATTCTACAAATTAATATAAAATTCTAGAAATTCTAGAAATTCTGAAATTCTAGAAATTCTGAAATTCTGAAATTCTGAAAATCTGAAAATCTGAAATTCTGAAATTCTGAAATTCTGAAATTCTGAAGTTCTGAAATTCTG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CCSGG</site>
                <isoschizomers>
                    <enzyme>AsuC2I</enzyme>
                    <enzyme>BcnI</enzyme>
                    <enzyme>CauII</enzyme>
                    <enzyme>EcoHI</enzyme>
                    <enzyme>NciI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>501 449 50</canonical_bands>
                <polymorphic_bands>551 449</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>TTAAATTTTCACTTGTTTTTCATC</pcr_primer_p1>
		<pcr_primer_p2>CTTCCTCTCACTTCTTAACAAAA</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>TTAAATTTTCACTTGTTTTTCATCCGGAATTTTCGGCTTTTTTTTTCTGGAGGACCCAACCAATTTTCCATTCCCGGTGCTTCCGTTTTTTTGTTCTTCTCTTTTTCCAAAACTTTGAAGTTTTCACCCATTTTTCTTTTCCTTTTTTTGAAAATGTCCCATAAATTTTTTTGCTGCAAAAGGCAAAAAAATTCTGGGAACCTAAAATTCAAGTGGAGAAAAAAAAATTTTGTTAAGAAGTGAGAGGAAG</canonical_amplicon>
		<polymorphic_amplicon>TTAAATTTTCACTTGTTTTTCATCCGGAATTTTCGGCTTTTTTTTTCTGGAGGACCCAACCAATTTTCCATTCCYGGTGCTTCCGTTTTTTTGTTCTTCTCTTTTTCCAAAACTTTGAAGTTTTCACCCATTTTTCTTTTCCTTTTTTTGAAAATGTCCCATAAATTTTTTTGCTGCAAAAGGCAAAAAAATTCTGGGAACCTAAAATTCAAGTGGAGAAAAAAAAATTTTGTTAAGAAGTGAGAGGAAG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39850</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>57173</contig_pos>
        <strand>+</strand>
        <context>TCATGTACAA[A/T]CGCTCCTTCT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>GAATTCAAAAAATCAAAACTATTCATCTTTTTTTTTATAATCATGTACAA</left_flank>
        <right_flank>CGCTCCTTCTGGAACATCTTCAACTTCAATGATATAAAAATACGTGGCAC</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTGTTCCAAGTTACTTCCGGAGGGCCCTTCTTTTAGGGGGAACCTTGAAATAAACCAAAAACTTTTTTATAAAAATTAGATGAGTTTCCGTTCAAAATTCACAAAAAGCCATTAATTTCACGTTTTCACTGAAATTTTTAATTTCAAAAAACAAGTTTTCAAGATAGCCCTACTATTTTCCCAAACCCTTCTCAGAGGGCCCTCCTATTACAGGGGCGCTTGAATTAAATGAGCTCTTTCTATAACATGTTTTCCGGTTTGTTTTTGAGAATTTTTTTTTTCATGTTCCAGCTAATTTTTCTGAAAATCAATGTCAACGATTAAAATACGAAAATTTATTGGAACTTCTGAATTAAAAAATCACAATTACATTTCAACACAATTATTTTCTGCAAAGTTCGACATCATAAATATAAATGTTGCCTTTTTAACTAATAAAAAGTTCTACAGAATTCAAAAAATCAAAACTATTCATCTTTTTTTTTATAATCATGTACAATCGCTCCTTCTGGAACATCTTCAACTTCAATGATATAAAAATACGTGGCACAATATTCTTGCAACATCGGATGGCGATGAGAAAGAATCTGGATTAGCAGAATTTTCTTCTCCGAGTCCTTGATTCGAAAATACCAAGTTCTTGACAATCCAGAGATAAACGGAAGACCCCACAAGTTAGAAAGTTCGTCGGTTTCGTTGAAACTTTTCAAATCGAAAAACCAATACTCGAGTTTAGAAAAATTGAGAAAAGTCTGAAATACTTGCAGTTCTAACAATTTTAATTCAAAATTCGCAAACCTTTTTCAAAGTGTCCAAATCCCTAGCAGTGAATGAATCCGTTTTCAAAGAAATTGATGAAAAATGACAGACGTCTTCTGCTCTCAAATTCAACAAATGCATATCACAAACAACTTCTATTGCTTTTTTCCAGTGCTCAGTTTTAACAATTTCATCAATATCAATTCCCAAATTATTATCCACTGAATGTAATTCGAGAACC</canonical>
            <polymorphic>TTGTTCCAAGTTACTTCCGGAGGGCCCTTCTTTTAGGGGGAACCTTGAAATAAACCAAAAACTTTTTTATAAAAATTAGATGAGTTTCCGTTCAAAATTCACAAAAAGCCATTAATTTCACGTTTTCACTGAAATTTTTAATTTCAAAAAACAAGTTTTCAAGATAGCCCTACTATTTTCCCAAACCCTTCTCAGAGGGCCCTCCTATTACAGGGGCGCTTGAATTAAATGAGCTCTTTCTATAACATGTTTTCCGGTTTGTTTTTGAGAATTTTTTTTTTCATGTTCCAGCTAATTTTTCTGAAAATCAATGTCAACGATTAAAATACGAAAATTTATTGGAACTTCTGAATTAAAAAATCACAATTACATTTCAACACAATTATTTTCTGCAAAGTTCGACATCATAAATATAAATGTTGCCTTTTTAACTAATAAAAAGTTCTACAGAATTCAAAAAATCAAAACTATTCATCTTTTTTTTTATAATCATGTACAAWCGCTCCTTCTGGAACATCTTCAACTTCAATGATATAAAAATACGTGGCACAATATTCTTGCAACATCGGATGGCGATGAGAAAGAATCTGGATTAGCAGAATTTTCTTCTCCGAGTCCTTGATTCGAAAATACCAAGTTCTTGACAATCCAGAGATAAACGGAAGACCCCACAAGTTAGAAAGTTCGTCGGTTTCGTTGAAACTTTTCAAATCGAAAAACCAATACTCGAGTTTAGAAAAATTGAGAAAAGTCTGAAATACTTGCAGTTCTAACAATTTTAATTCAAAATTCGCAAACCTTTTTCAAAGTGTCCAAATCCCTAGCAGTGAATGAATCCGTTTTCAAAGAAATTGATGAAAAATGACAGACGTCTTCTGCTCTCAAATTCAACAAATGCATATCACAAACAACTTCTATTGCTTTTTTCCAGTGCTCAGTTTTAACAATTTCATCAATATCAATTCCCAAATTATTATCCACTGAATGTAATTCGAGAACC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AATCACAATTACATTTCAACACA</pcr_primer_p1>
		<pcr_primer_p2>AAATTCTGCTAATCCAGATTCTT</pcr_primer_p2>
		<pcr_amplicon_size>246</pcr_amplicon_size>
		<canonical_amplicon>AATCACAATTACATTTCAACACAATTATTTTCTGCAAAGTTCGACATCATAAATATAAATGTTGCCTTTTTAACTAATAAAAAGTTCTACAGAATTCAAAAAATCAAAACTATTCATCTTTTTTTTTATAATCATGTACAATCGCTCCTTCTGGAACATCTTCAACTTCAATGATATAAAAATACGTGGCACAATATTCTTGCAACATCGGATGGCGATGAGAAAGAATCTGGATTAGCAGAATTT</canonical_amplicon>
		<polymorphic_amplicon>AATCACAATTACATTTCAACACAATTATTTTCTGCAAAGTTCGACATCATAAATATAAATGTTGCCTTTTTAACTAATAAAAAGTTCTACAGAATTCAAAAAATCAAAACTATTCATCTTTTTTTTTATAATCATGTACAAWCGCTCCTTCTGGAACATCTTCAACTTCAATGATATAAAAATACGTGGCACAATATTCTTGCAACATCGGATGGCGATGAGAAAGAATCTGGATTAGCAGAATTT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39851</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>57362</contig_pos>
        <strand>+</strand>
        <context>GAAAGTTCGT[C/T]GGTTTCGTTG</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TCTTGACAATCCAGAGATAAACGGAAGACCCCACAAGTTAGAAAGTTCGT</left_flank>
        <right_flank>GGTTTCGTTGAAACTTTTCAAATCGAAAAACCAATACTCGAGTTTAGAAA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCTCAGAGGGCCCTCCTATTACAGGGGCGCTTGAATTAAATGAGCTCTTTCTATAACATGTTTTCCGGTTTGTTTTTGAGAATTTTTTTTTTCATGTTCCAGCTAATTTTTCTGAAAATCAATGTCAACGATTAAAATACGAAAATTTATTGGAACTTCTGAATTAAAAAATCACAATTACATTTCAACACAATTATTTTCTGCAAAGTTCGACATCATAAATATAAATGTTGCCTTTTTAACTAATAAAAAGTTCTACAGAATTCAAAAAATCAAAACTATTCATCTTTTTTTTTATAATCATGTACAATCGCTCCTTCTGGAACATCTTCAACTTCAATGATATAAAAATACGTGGCACAATATTCTTGCAACATCGGATGGCGATGAGAAAGAATCTGGATTAGCAGAATTTTCTTCTCCGAGTCCTTGATTCGAAAATACCAAGTTCTTGACAATCCAGAGATAAACGGAAGACCCCACAAGTTAGAAAGTTCGTCGGTTTCGTTGAAACTTTTCAAATCGAAAAACCAATACTCGAGTTTAGAAAAATTGAGAAAAGTCTGAAATACTTGCAGTTCTAACAATTTTAATTCAAAATTCGCAAACCTTTTTCAAAGTGTCCAAATCCCTAGCAGTGAATGAATCCGTTTTCAAAGAAATTGATGAAAAATGACAGACGTCTTCTGCTCTCAAATTCAACAAATGCATATCACAAACAACTTCTATTGCTTTTTTCCAGTGCTCAGTTTTAACAATTTCATCAATATCAATTCCCAAATTATTATCCACTGAATGTAATTCGAGAACCTCCAGAGTTTGTGGATCAGTACATCCTAACATCGAAAGTACTTGAGAGTGATGGAACACTGTTATACTTATGTGCCTTGTTTTGATTATCTGACCGGATGCACTGAGCATATTGCTCAGCTTATTTTGAAGCTGACAATCATCCAAAGATAAAGTTAACACTTCGAAATTGTACCTTTGAAATTTCAAA</canonical>
            <polymorphic>TCTCAGAGGGCCCTCCTATTACAGGGGCGCTTGAATTAAATGAGCTCTTTCTATAACATGTTTTCCGGTTTGTTTTTGAGAATTTTTTTTTTCATGTTCCAGCTAATTTTTCTGAAAATCAATGTCAACGATTAAAATACGAAAATTTATTGGAACTTCTGAATTAAAAAATCACAATTACATTTCAACACAATTATTTTCTGCAAAGTTCGACATCATAAATATAAATGTTGCCTTTTTAACTAATAAAAAGTTCTACAGAATTCAAAAAATCAAAACTATTCATCTTTTTTTTTATAATCATGTACAATCGCTCCTTCTGGAACATCTTCAACTTCAATGATATAAAAATACGTGGCACAATATTCTTGCAACATCGGATGGCGATGAGAAAGAATCTGGATTAGCAGAATTTTCTTCTCCGAGTCCTTGATTCGAAAATACCAAGTTCTTGACAATCCAGAGATAAACGGAAGACCCCACAAGTTAGAAAGTTCGTYGGTTTCGTTGAAACTTTTCAAATCGAAAAACCAATACTCGAGTTTAGAAAAATTGAGAAAAGTCTGAAATACTTGCAGTTCTAACAATTTTAATTCAAAATTCGCAAACCTTTTTCAAAGTGTCCAAATCCCTAGCAGTGAATGAATCCGTTTTCAAAGAAATTGATGAAAAATGACAGACGTCTTCTGCTCTCAAATTCAACAAATGCATATCACAAACAACTTCTATTGCTTTTTTCCAGTGCTCAGTTTTAACAATTTCATCAATATCAATTCCCAAATTATTATCCACTGAATGTAATTCGAGAACCTCCAGAGTTTGTGGATCAGTACATCCTAACATCGAAAGTACTTGAGAGTGATGGAACACTGTTATACTTATGTGCCTTGTTTTGATTATCTGACCGGATGCACTGAGCATATTGCTCAGCTTATTTTGAAGCTGACAATCATCCAAAGATAAAGTTAACACTTCGAAATTGTACCTTTGAAATTTCAAA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CGWCG</site>
                <isoschizomers>
                    <enzyme>Hpy99I</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CTTGATTCGAAAATACCAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TGTCATTTTTCATCAATTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTGATTCGAAAATACCAAGTTCTTGACAATCCAGAGATAAACGGAAGACCCCACAAGTTAGAAAGTTCGTCGGTTTCGTTGAAACTTTTCAAATCGAAAAACCAATACTCGAGTTTAGAAAAATTGAGAAAAGTCTGAAATACTTGCAGTTCTAACAATTTTAATTCAAAATTCGCAAACCTTTTTCAAAGTGTCCAAATCCCTAGCAGTGAATGAATCCGTTTTCAAAGAAATTGATGAAAAATGACA</canonical_amplicon>
		<polymorphic_amplicon>CTTGATTCGAAAATACCAAGTTCTTGACAATCCAGAGATAAACGGAAGACCCCACAAGTTAGAAAGTTCGTYGGTTTCGTTGAAACTTTTCAAATCGAAAAACCAATACTCGAGTTTAGAAAAATTGAGAAAAGTCTGAAATACTTGCAGTTCTAACAATTTTAATTCAAAATTCGCAAACCTTTTTCAAAGTGTCCAAATCCCTAGCAGTGAATGAATCCGTTTTCAAAGAAATTGATGAAAAATGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39852</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>57391</contig_pos>
        <strand>+</strand>
        <context>CAAATCGAAA[A/T]ACCAATACTC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CCCACAAGTTAGAAAGTTCGTCGGTTTCGTTGAAACTTTTCAAATCGAAA</left_flank>
        <right_flank>ACCAATACTCGAGTTTAGAAAAATTGAGAAAAGTCTGAAATACTTGCAGT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>CTTGAATTAAATGAGCTCTTTCTATAACATGTTTTCCGGTTTGTTTTTGAGAATTTTTTTTTTCATGTTCCAGCTAATTTTTCTGAAAATCAATGTCAACGATTAAAATACGAAAATTTATTGGAACTTCTGAATTAAAAAATCACAATTACATTTCAACACAATTATTTTCTGCAAAGTTCGACATCATAAATATAAATGTTGCCTTTTTAACTAATAAAAAGTTCTACAGAATTCAAAAAATCAAAACTATTCATCTTTTTTTTTATAATCATGTACAATCGCTCCTTCTGGAACATCTTCAACTTCAATGATATAAAAATACGTGGCACAATATTCTTGCAACATCGGATGGCGATGAGAAAGAATCTGGATTAGCAGAATTTTCTTCTCCGAGTCCTTGATTCGAAAATACCAAGTTCTTGACAATCCAGAGATAAACGGAAGACCCCACAAGTTAGAAAGTTCGTCGGTTTCGTTGAAACTTTTCAAATCGAAAAACCAATACTCGAGTTTAGAAAAATTGAGAAAAGTCTGAAATACTTGCAGTTCTAACAATTTTAATTCAAAATTCGCAAACCTTTTTCAAAGTGTCCAAATCCCTAGCAGTGAATGAATCCGTTTTCAAAGAAATTGATGAAAAATGACAGACGTCTTCTGCTCTCAAATTCAACAAATGCATATCACAAACAACTTCTATTGCTTTTTTCCAGTGCTCAGTTTTAACAATTTCATCAATATCAATTCCCAAATTATTATCCACTGAATGTAATTCGAGAACCTCCAGAGTTTGTGGATCAGTACATCCTAACATCGAAAGTACTTGAGAGTGATGGAACACTGTTATACTTATGTGCCTTGTTTTGATTATCTGACCGGATGCACTGAGCATATTGCTCAGCTTATTTTGAAGCTGACAATCATCCAAAGATAAAGTTAACACTTCGAAATTGTACCTTTGAAATTTCAAAATCAATTCCAGATCTCGAATCGCCACATC</canonical>
            <polymorphic>CTTGAATTAAATGAGCTCTTTCTATAACATGTTTTCCGGTTTGTTTTTGAGAATTTTTTTTTTCATGTTCCAGCTAATTTTTCTGAAAATCAATGTCAACGATTAAAATACGAAAATTTATTGGAACTTCTGAATTAAAAAATCACAATTACATTTCAACACAATTATTTTCTGCAAAGTTCGACATCATAAATATAAATGTTGCCTTTTTAACTAATAAAAAGTTCTACAGAATTCAAAAAATCAAAACTATTCATCTTTTTTTTTATAATCATGTACAATCGCTCCTTCTGGAACATCTTCAACTTCAATGATATAAAAATACGTGGCACAATATTCTTGCAACATCGGATGGCGATGAGAAAGAATCTGGATTAGCAGAATTTTCTTCTCCGAGTCCTTGATTCGAAAATACCAAGTTCTTGACAATCCAGAGATAAACGGAAGACCCCACAAGTTAGAAAGTTCGTCGGTTTCGTTGAAACTTTTCAAATCGAAAWACCAATACTCGAGTTTAGAAAAATTGAGAAAAGTCTGAAATACTTGCAGTTCTAACAATTTTAATTCAAAATTCGCAAACCTTTTTCAAAGTGTCCAAATCCCTAGCAGTGAATGAATCCGTTTTCAAAGAAATTGATGAAAAATGACAGACGTCTTCTGCTCTCAAATTCAACAAATGCATATCACAAACAACTTCTATTGCTTTTTTCCAGTGCTCAGTTTTAACAATTTCATCAATATCAATTCCCAAATTATTATCCACTGAATGTAATTCGAGAACCTCCAGAGTTTGTGGATCAGTACATCCTAACATCGAAAGTACTTGAGAGTGATGGAACACTGTTATACTTATGTGCCTTGTTTTGATTATCTGACCGGATGCACTGAGCATATTGCTCAGCTTATTTTGAAGCTGACAATCATCCAAAGATAAAGTTAACACTTCGAAATTGTACCTTTGAAATTTCAAAATCAATTCCAGATCTCGAATCGCCACATC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CTTGATTCGAAAATACCAAGTT</pcr_primer_p1>
		<pcr_primer_p2>TGTCATTTTTCATCAATTTCTTT</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CTTGATTCGAAAATACCAAGTTCTTGACAATCCAGAGATAAACGGAAGACCCCACAAGTTAGAAAGTTCGTCGGTTTCGTTGAAACTTTTCAAATCGAAAAACCAATACTCGAGTTTAGAAAAATTGAGAAAAGTCTGAAATACTTGCAGTTCTAACAATTTTAATTCAAAATTCGCAAACCTTTTTCAAAGTGTCCAAATCCCTAGCAGTGAATGAATCCGTTTTCAAAGAAATTGATGAAAAATGACA</canonical_amplicon>
		<polymorphic_amplicon>CTTGATTCGAAAATACCAAGTTCTTGACAATCCAGAGATAAACGGAAGACCCCACAAGTTAGAAAGTTCGTCGGTTTCGTTGAAACTTTTCAAATCGAAAWACCAATACTCGAGTTTAGAAAAATTGAGAAAAGTCTGAAATACTTGCAGTTCTAACAATTTTAATTCAAAATTCGCAAACCTTTTTCAAAGTGTCCAAATCCCTAGCAGTGAATGAATCCGTTTTCAAAGAAATTGATGAAAAATGACA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39853</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>57478</contig_pos>
        <strand>+</strand>
        <context>AAACCTTTTT[C/T]AAAGTGTCCA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>GAAATACTTGCAGTTCTAACAATTTTAATTCAAAATTCGCAAACCTTTTT</left_flank>
        <right_flank>AAAGTGTCCAAATCCCTAGCAGTGAATGAATCCGTTTTCAAAGAAATTGA</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AATCAATGTCAACGATTAAAATACGAAAATTTATTGGAACTTCTGAATTAAAAAATCACAATTACATTTCAACACAATTATTTTCTGCAAAGTTCGACATCATAAATATAAATGTTGCCTTTTTAACTAATAAAAAGTTCTACAGAATTCAAAAAATCAAAACTATTCATCTTTTTTTTTATAATCATGTACAATCGCTCCTTCTGGAACATCTTCAACTTCAATGATATAAAAATACGTGGCACAATATTCTTGCAACATCGGATGGCGATGAGAAAGAATCTGGATTAGCAGAATTTTCTTCTCCGAGTCCTTGATTCGAAAATACCAAGTTCTTGACAATCCAGAGATAAACGGAAGACCCCACAAGTTAGAAAGTTCGTCGGTTTCGTTGAAACTTTTCAAATCGAAAAACCAATACTCGAGTTTAGAAAAATTGAGAAAAGTCTGAAATACTTGCAGTTCTAACAATTTTAATTCAAAATTCGCAAACCTTTTTCAAAGTGTCCAAATCCCTAGCAGTGAATGAATCCGTTTTCAAAGAAATTGATGAAAAATGACAGACGTCTTCTGCTCTCAAATTCAACAAATGCATATCACAAACAACTTCTATTGCTTTTTTCCAGTGCTCAGTTTTAACAATTTCATCAATATCAATTCCCAAATTATTATCCACTGAATGTAATTCGAGAACCTCCAGAGTTTGTGGATCAGTACATCCTAACATCGAAAGTACTTGAGAGTGATGGAACACTGTTATACTTATGTGCCTTGTTTTGATTATCTGACCGGATGCACTGAGCATATTGCTCAGCTTATTTTGAAGCTGACAATCATCCAAAGATAAAGTTAACACTTCGAAATTGTACCTTTGAAATTTCAAAATCAATTCCAGATCTCGAATCGCCACATCCACAATATTCGAGTTCTCCAAAATTGTCTTCTTCTCTTGGAATTTTCTACAATTTTCAGATGCAGAATACTCCATGCGATAGAAAGT</canonical>
            <polymorphic>AATCAATGTCAACGATTAAAATACGAAAATTTATTGGAACTTCTGAATTAAAAAATCACAATTACATTTCAACACAATTATTTTCTGCAAAGTTCGACATCATAAATATAAATGTTGCCTTTTTAACTAATAAAAAGTTCTACAGAATTCAAAAAATCAAAACTATTCATCTTTTTTTTTATAATCATGTACAATCGCTCCTTCTGGAACATCTTCAACTTCAATGATATAAAAATACGTGGCACAATATTCTTGCAACATCGGATGGCGATGAGAAAGAATCTGGATTAGCAGAATTTTCTTCTCCGAGTCCTTGATTCGAAAATACCAAGTTCTTGACAATCCAGAGATAAACGGAAGACCCCACAAGTTAGAAAGTTCGTCGGTTTCGTTGAAACTTTTCAAATCGAAAAACCAATACTCGAGTTTAGAAAAATTGAGAAAAGTCTGAAATACTTGCAGTTCTAACAATTTTAATTCAAAATTCGCAAACCTTTTTYAAAGTGTCCAAATCCCTAGCAGTGAATGAATCCGTTTTCAAAGAAATTGATGAAAAATGACAGACGTCTTCTGCTCTCAAATTCAACAAATGCATATCACAAACAACTTCTATTGCTTTTTTCCAGTGCTCAGTTTTAACAATTTCATCAATATCAATTCCCAAATTATTATCCACTGAATGTAATTCGAGAACCTCCAGAGTTTGTGGATCAGTACATCCTAACATCGAAAGTACTTGAGAGTGATGGAACACTGTTATACTTATGTGCCTTGTTTTGATTATCTGACCGGATGCACTGAGCATATTGCTCAGCTTATTTTGAAGCTGACAATCATCCAAAGATAAAGTTAACACTTCGAAATTGTACCTTTGAAATTTCAAAATCAATTCCAGATCTCGAATCGCCACATCCACAATATTCGAGTTCTCCAAAATTGTCTTCTTCTCTTGGAATTTTCTACAATTTTCAGATGCAGAATACTCCATGCGATAGAAAGT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TCGAGTTTAGAAAAATTGAGAAA</pcr_primer_p1>
		<pcr_primer_p2>AATAATTTGGGAATTGATATTGA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TCGAGTTTAGAAAAATTGAGAAAAGTCTGAAATACTTGCAGTTCTAACAATTTTAATTCAAAATTCGCAAACCTTTTTCAAAGTGTCCAAATCCCTAGCAGTGAATGAATCCGTTTTCAAAGAAATTGATGAAAAATGACAGACGTCTTCTGCTCTCAAATTCAACAAATGCATATCACAAACAACTTCTATTGCTTTTTTCCAGTGCTCAGTTTTAACAATTTCATCAATATCAATTCCCAAATTATT</canonical_amplicon>
		<polymorphic_amplicon>TCGAGTTTAGAAAAATTGAGAAAAGTCTGAAATACTTGCAGTTCTAACAATTTTAATTCAAAATTCGCAAACCTTTTTYAAAGTGTCCAAATCCCTAGCAGTGAATGAATCCGTTTTCAAAGAAATTGATGAAAAATGACAGACGTCTTCTGCTCTCAAATTCAACAAATGCATATCACAAACAACTTCTATTGCTTTTTTCCAGTGCTCAGTTTTAACAATTTCATCAATATCAATTCCCAAATTATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39854</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>57734</contig_pos>
        <strand>+</strand>
        <context>ATGGAACACT[G/T]TTATACTTAW</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>GTGGATCAGTACATCCTAACATCGAAAGTACTTGAGAGTGATGGAACACT</left_flank>
        <right_flank>TTATACTTATGTGCCTTGTTTTGATTATCTGACCGGATGCACTGAGCATA</right_flank>
        <qual_score>147</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AACATCGGATGGCGATGAGAAAGAATCTGGATTAGCAGAATTTTCTTCTCCGAGTCCTTGATTCGAAAATACCAAGTTCTTGACAATCCAGAGATAAACGGAAGACCCCACAAGTTAGAAAGTTCGTCGGTTTCGTTGAAACTTTTCAAATCGAAAAACCAATACTCGAGTTTAGAAAAATTGAGAAAAGTCTGAAATACTTGCAGTTCTAACAATTTTAATTCAAAATTCGCAAACCTTTTTCAAAGTGTCCAAATCCCTAGCAGTGAATGAATCCGTTTTCAAAGAAATTGATGAAAAATGACAGACGTCTTCTGCTCTCAAATTCAACAAATGCATATCACAAACAACTTCTATTGCTTTTTTCCAGTGCTCAGTTTTAACAATTTCATCAATATCAATTCCCAAATTATTATCCACTGAATGTAATTCGAGAACCTCCAGAGTTTGTGGATCAGTACATCCTAACATCGAAAGTACTTGAGAGTGATGGAACACTGTTATACTTATGTGCCTTGTTTTGATTATCTGACCGGATGCACTGAGCATATTGCTCAGCTTATTTTGAAGCTGACAATCATCCAAAGATAAAGTTAACACTTCGAAATTGTACCTTTGAAATTTCAAAATCAATTCCAGATCTCGAATCGCCACATCCACAATATTCGAGTTCTCCAAAATTGTCTTCTTCTCTTGGAATTTTCTACAATTTTCAGATGCAGAATACTCCATGCGATAGAAAGTAAATTTGGGATCCATAAATTGCAAAACTATATTCTTTTCCTTATTTTCAGAAATAATTTCAATTTGCTCGAATTCCGAATCTGGCAATTTTGAATCTTCCAAATCGTCAATAAAATTTCGAAAATCTCGACACACTTGGCGAAGGGACAAACTGAAAGTTTGAAACTTTCCAAAATTTACTAATTAAAAAAAGTACTCACACAGCTTTGAAATCTGAAAATCGTATAAATTTTTCCAGTACACGATCCGGCATTTC</canonical>
            <polymorphic>AACATCGGATGGCGATGAGAAAGAATCTGGATTAGCAGAATTTTCTTCTCCGAGTCCTTGATTCGAAAATACCAAGTTCTTGACAATCCAGAGATAAACGGAAGACCCCACAAGTTAGAAAGTTCGTCGGTTTCGTTGAAACTTTTCAAATCGAAAAACCAATACTCGAGTTTAGAAAAATTGAGAAAAGTCTGAAATACTTGCAGTTCTAACAATTTTAATTCAAAATTCGCAAACCTTTTTCAAAGTGTCCAAATCCCTAGCAGTGAATGAATCCGTTTTCAAAGAAATTGATGAAAAATGACAGACGTCTTCTGCTCTCAAATTCAACAAATGCATATCACAAACAACTTCTATTGCTTTTTTCCAGTGCTCAGTTTTAACAATTTCATCAATATCAATTCCCAAATTATTATCCACTGAATGTAATTCGAGAACCTCCAGAGTTTGTGGATCAGTACATCCTAACATCGAAAGTACTTGAGAGTGATGGAACACTKTTATACTTATGTGCCTTGTTTTGATTATCTGACCGGATGCACTGAGCATATTGCTCAGCTTATTTTGAAGCTGACAATCATCCAAAGATAAAGTTAACACTTCGAAATTGTACCTTTGAAATTTCAAAATCAATTCCAGATCTCGAATCGCCACATCCACAATATTCGAGTTCTCCAAAATTGTCTTCTTCTCTTGGAATTTTCTACAATTTTCAGATGCAGAATACTCCATGCGATAGAAAGTAAATTTGGGATCCATAAATTGCAAAACTATATTCTTTTCCTTATTTTCAGAAATAATTTCAATTTGCTCGAATTCCGAATCTGGCAATTTTGAATCTTCCAAATCGTCAATAAAATTTCGAAAATCTCGACACACTTGGCGAAGGGACAAACTGAAAGTTTGAAACTTTCCAAAATTTACTAATTAAAAAAAGTACTCACACAGCTTTGAAATCTGAAAATCGTATAAATTTTTCCAGTACACGATCCGGCATTTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>ACNGT</site>
                <isoschizomers>
                    <enzyme>Bst4CI</enzyme>
                    <enzyme>HpyCH4III</enzyme>
                    <enzyme>TaaI</enzyme>
                    <enzyme>Tsp4CI</enzyme>
                </isoschizomers>
                <canonical_bands>501 499</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>AATGCATATCACAAACAACTTCT</pcr_primer_p1>
		<pcr_primer_p2>ATGATTGTCAGCTTCAAAATAAG</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>AATGCATATCACAAACAACTTCTATTGCTTTTTTCCAGTGCTCAGTTTTAACAATTTCATCAATATCAATTCCCAAATTATTATCCACTGAATGTAATTCGAGAACCTCCAGAGTTTGTGGATCAGTACATCCTAACATCGAAAGTACTTGAGAGTGATGGAACACTGTTATACTTATGTGCCTTGTTTTGATTATCTGACCGGATGCACTGAGCATATTGCTCAGCTTATTTTGAAGCTGACAATCAT</canonical_amplicon>
		<polymorphic_amplicon>AATGCATATCACAAACAACTTCTATTGCTTTTTTCCAGTGCTCAGTTTTAACAATTTCATCAATATCAATTCCCAAATTATTATCCACTGAATGTAATTCGAGAACCTCCAGAGTTTGTGGATCAGTACATCCTAACATCGAAAGTACTTGAGAGTGATGGAACACTKTTATACTTATGTGCCTTGTTTTGATTATCTGACCGGATGCACTGAGCATATTGCTCAGCTTATTTTGAAGCTGACAATCAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39855</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>57744</contig_pos>
        <strand>+</strand>
        <context>KTTATACTTA[A/T]KTGYCTTGTT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>ACATCCTAACATCGAAAGTACTTGAGAGTGATGGAACACTGTTATACTTA</left_flank>
        <right_flank>GTGCCTTGTTTTGATTATCTGACCGGATGCACTGAGCATATTGCTCAGCT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GGCGATGAGAAAGAATCTGGATTAGCAGAATTTTCTTCTCCGAGTCCTTGATTCGAAAATACCAAGTTCTTGACAATCCAGAGATAAACGGAAGACCCCACAAGTTAGAAAGTTCGTCGGTTTCGTTGAAACTTTTCAAATCGAAAAACCAATACTCGAGTTTAGAAAAATTGAGAAAAGTCTGAAATACTTGCAGTTCTAACAATTTTAATTCAAAATTCGCAAACCTTTTTCAAAGTGTCCAAATCCCTAGCAGTGAATGAATCCGTTTTCAAAGAAATTGATGAAAAATGACAGACGTCTTCTGCTCTCAAATTCAACAAATGCATATCACAAACAACTTCTATTGCTTTTTTCCAGTGCTCAGTTTTAACAATTTCATCAATATCAATTCCCAAATTATTATCCACTGAATGTAATTCGAGAACCTCCAGAGTTTGTGGATCAGTACATCCTAACATCGAAAGTACTTGAGAGTGATGGAACACTGTTATACTTATGTGCCTTGTTTTGATTATCTGACCGGATGCACTGAGCATATTGCTCAGCTTATTTTGAAGCTGACAATCATCCAAAGATAAAGTTAACACTTCGAAATTGTACCTTTGAAATTTCAAAATCAATTCCAGATCTCGAATCGCCACATCCACAATATTCGAGTTCTCCAAAATTGTCTTCTTCTCTTGGAATTTTCTACAATTTTCAGATGCAGAATACTCCATGCGATAGAAAGTAAATTTGGGATCCATAAATTGCAAAACTATATTCTTTTCCTTATTTTCAGAAATAATTTCAATTTGCTCGAATTCCGAATCTGGCAATTTTGAATCTTCCAAATCGTCAATAAAATTTCGAAAATCTCGACACACTTGGCGAAGGGACAAACTGAAAGTTTGAAACTTTCCAAAATTTACTAATTAAAAAAAGTACTCACACAGCTTTGAAATCTGAAAATCGTATAAATTTTTCCAGTACACGATCCGGCATTTCCATGATTGAT</canonical>
            <polymorphic>GGCGATGAGAAAGAATCTGGATTAGCAGAATTTTCTTCTCCGAGTCCTTGATTCGAAAATACCAAGTTCTTGACAATCCAGAGATAAACGGAAGACCCCACAAGTTAGAAAGTTCGTCGGTTTCGTTGAAACTTTTCAAATCGAAAAACCAATACTCGAGTTTAGAAAAATTGAGAAAAGTCTGAAATACTTGCAGTTCTAACAATTTTAATTCAAAATTCGCAAACCTTTTTCAAAGTGTCCAAATCCCTAGCAGTGAATGAATCCGTTTTCAAAGAAATTGATGAAAAATGACAGACGTCTTCTGCTCTCAAATTCAACAAATGCATATCACAAACAACTTCTATTGCTTTTTTCCAGTGCTCAGTTTTAACAATTTCATCAATATCAATTCCCAAATTATTATCCACTGAATGTAATTCGAGAACCTCCAGAGTTTGTGGATCAGTACATCCTAACATCGAAAGTACTTGAGAGTGATGGAACACTGTTATACTTAWGTGCCTTGTTTTGATTATCTGACCGGATGCACTGAGCATATTGCTCAGCTTATTTTGAAGCTGACAATCATCCAAAGATAAAGTTAACACTTCGAAATTGTACCTTTGAAATTTCAAAATCAATTCCAGATCTCGAATCGCCACATCCACAATATTCGAGTTCTCCAAAATTGTCTTCTTCTCTTGGAATTTTCTACAATTTTCAGATGCAGAATACTCCATGCGATAGAAAGTAAATTTGGGATCCATAAATTGCAAAACTATATTCTTTTCCTTATTTTCAGAAATAATTTCAATTTGCTCGAATTCCGAATCTGGCAATTTTGAATCTTCCAAATCGTCAATAAAATTTCGAAAATCTCGACACACTTGGCGAAGGGACAAACTGAAAGTTTGAAACTTTCCAAAATTTACTAATTAAAAAAAGTACTCACACAGCTTTGAAATCTGAAAATCGTATAAATTTTTCCAGTACACGATCCGGCATTTCCATGATTGAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTACATCCTAACATCGAAAGT</pcr_primer_p1>
		<pcr_primer_p2>AGAAAATTCCAAGAGAAGAAGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGTACATCCTAACATCGAAAGTACTTGAGAGTGATGGAACACTGTTATACTTATGTGCCTTGTTTTGATTATCTGACCGGATGCACTGAGCATATTGCTCAGCTTATTTTGAAGCTGACAATCATCCAAAGATAAAGTTAACACTTCGAAATTGTACCTTTGAAATTTCAAAATCAATTCCAGATCTCGAATCGCCACATCCACAATATTCGAGTTCTCCAAAATTGTCTTCTTCTCTTGGAATTTTCT</canonical_amplicon>
		<polymorphic_amplicon>CAGTACATCCTAACATCGAAAGTACTTGAGAGTGATGGAACACTGTTATACTTAWGTGCCTTGTTTTGATTATCTGACCGGATGCACTGAGCATATTGCTCAGCTTATTTTGAAGCTGACAATCATCCAAAGATAAAGTTAACACTTCGAAATTGTACCTTTGAAATTTCAAAATCAATTCCAGATCTCGAATCGCCACATCCACAATATTCGAGTTCTCCAAAATTGTCTTCTTCTCTTGGAATTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39856</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>57745</contig_pos>
        <strand>+</strand>
        <context>TTATACTTAW[G/T]TGYCTTGTTT</context>
        <canonical_base>G</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>CATCCTAACATCGAAAGTACTTGAGAGTGATGGAACACTGTTATACTTAT</left_flank>
        <right_flank>TGCCTTGTTTTGATTATCTGACCGGATGCACTGAGCATATTGCTCAGCTT</right_flank>
        <qual_score>141</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>GCGATGAGAAAGAATCTGGATTAGCAGAATTTTCTTCTCCGAGTCCTTGATTCGAAAATACCAAGTTCTTGACAATCCAGAGATAAACGGAAGACCCCACAAGTTAGAAAGTTCGTCGGTTTCGTTGAAACTTTTCAAATCGAAAAACCAATACTCGAGTTTAGAAAAATTGAGAAAAGTCTGAAATACTTGCAGTTCTAACAATTTTAATTCAAAATTCGCAAACCTTTTTCAAAGTGTCCAAATCCCTAGCAGTGAATGAATCCGTTTTCAAAGAAATTGATGAAAAATGACAGACGTCTTCTGCTCTCAAATTCAACAAATGCATATCACAAACAACTTCTATTGCTTTTTTCCAGTGCTCAGTTTTAACAATTTCATCAATATCAATTCCCAAATTATTATCCACTGAATGTAATTCGAGAACCTCCAGAGTTTGTGGATCAGTACATCCTAACATCGAAAGTACTTGAGAGTGATGGAACACTGTTATACTTATGTGCCTTGTTTTGATTATCTGACCGGATGCACTGAGCATATTGCTCAGCTTATTTTGAAGCTGACAATCATCCAAAGATAAAGTTAACACTTCGAAATTGTACCTTTGAAATTTCAAAATCAATTCCAGATCTCGAATCGCCACATCCACAATATTCGAGTTCTCCAAAATTGTCTTCTTCTCTTGGAATTTTCTACAATTTTCAGATGCAGAATACTCCATGCGATAGAAAGTAAATTTGGGATCCATAAATTGCAAAACTATATTCTTTTCCTTATTTTCAGAAATAATTTCAATTTGCTCGAATTCCGAATCTGGCAATTTTGAATCTTCCAAATCGTCAATAAAATTTCGAAAATCTCGACACACTTGGCGAAGGGACAAACTGAAAGTTTGAAACTTTCCAAAATTTACTAATTAAAAAAAGTACTCACACAGCTTTGAAATCTGAAAATCGTATAAATTTTTCCAGTACACGATCCGGCATTTCCATGATTGATG</canonical>
            <polymorphic>GCGATGAGAAAGAATCTGGATTAGCAGAATTTTCTTCTCCGAGTCCTTGATTCGAAAATACCAAGTTCTTGACAATCCAGAGATAAACGGAAGACCCCACAAGTTAGAAAGTTCGTCGGTTTCGTTGAAACTTTTCAAATCGAAAAACCAATACTCGAGTTTAGAAAAATTGAGAAAAGTCTGAAATACTTGCAGTTCTAACAATTTTAATTCAAAATTCGCAAACCTTTTTCAAAGTGTCCAAATCCCTAGCAGTGAATGAATCCGTTTTCAAAGAAATTGATGAAAAATGACAGACGTCTTCTGCTCTCAAATTCAACAAATGCATATCACAAACAACTTCTATTGCTTTTTTCCAGTGCTCAGTTTTAACAATTTCATCAATATCAATTCCCAAATTATTATCCACTGAATGTAATTCGAGAACCTCCAGAGTTTGTGGATCAGTACATCCTAACATCGAAAGTACTTGAGAGTGATGGAACACTGTTATACTTATKTGCCTTGTTTTGATTATCTGACCGGATGCACTGAGCATATTGCTCAGCTTATTTTGAAGCTGACAATCATCCAAAGATAAAGTTAACACTTCGAAATTGTACCTTTGAAATTTCAAAATCAATTCCAGATCTCGAATCGCCACATCCACAATATTCGAGTTCTCCAAAATTGTCTTCTTCTCTTGGAATTTTCTACAATTTTCAGATGCAGAATACTCCATGCGATAGAAAGTAAATTTGGGATCCATAAATTGCAAAACTATATTCTTTTCCTTATTTTCAGAAATAATTTCAATTTGCTCGAATTCCGAATCTGGCAATTTTGAATCTTCCAAATCGTCAATAAAATTTCGAAAATCTCGACACACTTGGCGAAGGGACAAACTGAAAGTTTGAAACTTTCCAAAATTTACTAATTAAAAAAAGTACTCACACAGCTTTGAAATCTGAAAATCGTATAAATTTTTCCAGTACACGATCCGGCATTTCCATGATTGATG</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>CAC</site>
                <isoschizomers>
                    <enzyme>HindI</enzyme>
                </isoschizomers>
                <canonical_bands>217 140 99 75 65 58 54 47 41 37 33 29 28 25 18 16 8 6 2 2</canonical_bands>
                <polymorphic_bands>217 140 99 75 65 58 54 47 44 41 37 33 29 25 18 8 6 2 2</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>CAGTACATCCTAACATCGAAAGT</pcr_primer_p1>
		<pcr_primer_p2>AGAAAATTCCAAGAGAAGAAGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGTACATCCTAACATCGAAAGTACTTGAGAGTGATGGAACACTGTTATACTTATGTGCCTTGTTTTGATTATCTGACCGGATGCACTGAGCATATTGCTCAGCTTATTTTGAAGCTGACAATCATCCAAAGATAAAGTTAACACTTCGAAATTGTACCTTTGAAATTTCAAAATCAATTCCAGATCTCGAATCGCCACATCCACAATATTCGAGTTCTCCAAAATTGTCTTCTTCTCTTGGAATTTTCT</canonical_amplicon>
		<polymorphic_amplicon>CAGTACATCCTAACATCGAAAGTACTTGAGAGTGATGGAACACTGTTATACTTATKTGCCTTGTTTTGATTATCTGACCGGATGCACTGAGCATATTGCTCAGCTTATTTTGAAGCTGACAATCATCCAAAGATAAAGTTAACACTTCGAAATTGTACCTTTGAAATTTCAAAATCAATTCCAGATCTCGAATCGCCACATCCACAATATTCGAGTTCTCCAAAATTGTCTTCTTCTCTTGGAATTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39857</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>57748</contig_pos>
        <strand>+</strand>
        <context>TACTTAWKTG[C/T]CTTGTTTTGA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>CCTAACATCGAAAGTACTTGAGAGTGATGGAACACTGTTATACTTATGTG</left_flank>
        <right_flank>CTTGTTTTGATTATCTGACCGGATGCACTGAGCATATTGCTCAGCTTATT</right_flank>
        <qual_score>133</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGAGAAAGAATCTGGATTAGCAGAATTTTCTTCTCCGAGTCCTTGATTCGAAAATACCAAGTTCTTGACAATCCAGAGATAAACGGAAGACCCCACAAGTTAGAAAGTTCGTCGGTTTCGTTGAAACTTTTCAAATCGAAAAACCAATACTCGAGTTTAGAAAAATTGAGAAAAGTCTGAAATACTTGCAGTTCTAACAATTTTAATTCAAAATTCGCAAACCTTTTTCAAAGTGTCCAAATCCCTAGCAGTGAATGAATCCGTTTTCAAAGAAATTGATGAAAAATGACAGACGTCTTCTGCTCTCAAATTCAACAAATGCATATCACAAACAACTTCTATTGCTTTTTTCCAGTGCTCAGTTTTAACAATTTCATCAATATCAATTCCCAAATTATTATCCACTGAATGTAATTCGAGAACCTCCAGAGTTTGTGGATCAGTACATCCTAACATCGAAAGTACTTGAGAGTGATGGAACACTGTTATACTTATGTGCCTTGTTTTGATTATCTGACCGGATGCACTGAGCATATTGCTCAGCTTATTTTGAAGCTGACAATCATCCAAAGATAAAGTTAACACTTCGAAATTGTACCTTTGAAATTTCAAAATCAATTCCAGATCTCGAATCGCCACATCCACAATATTCGAGTTCTCCAAAATTGTCTTCTTCTCTTGGAATTTTCTACAATTTTCAGATGCAGAATACTCCATGCGATAGAAAGTAAATTTGGGATCCATAAATTGCAAAACTATATTCTTTTCCTTATTTTCAGAAATAATTTCAATTTGCTCGAATTCCGAATCTGGCAATTTTGAATCTTCCAAATCGTCAATAAAATTTCGAAAATCTCGACACACTTGGCGAAGGGACAAACTGAAAGTTTGAAACTTTCCAAAATTTACTAATTAAAAAAAGTACTCACACAGCTTTGAAATCTGAAAATCGTATAAATTTTTCCAGTACACGATCCGGCATTTCCATGATTGATGTCA</canonical>
            <polymorphic>ATGAGAAAGAATCTGGATTAGCAGAATTTTCTTCTCCGAGTCCTTGATTCGAAAATACCAAGTTCTTGACAATCCAGAGATAAACGGAAGACCCCACAAGTTAGAAAGTTCGTCGGTTTCGTTGAAACTTTTCAAATCGAAAAACCAATACTCGAGTTTAGAAAAATTGAGAAAAGTCTGAAATACTTGCAGTTCTAACAATTTTAATTCAAAATTCGCAAACCTTTTTCAAAGTGTCCAAATCCCTAGCAGTGAATGAATCCGTTTTCAAAGAAATTGATGAAAAATGACAGACGTCTTCTGCTCTCAAATTCAACAAATGCATATCACAAACAACTTCTATTGCTTTTTTCCAGTGCTCAGTTTTAACAATTTCATCAATATCAATTCCCAAATTATTATCCACTGAATGTAATTCGAGAACCTCCAGAGTTTGTGGATCAGTACATCCTAACATCGAAAGTACTTGAGAGTGATGGAACACTGTTATACTTATGTGYCTTGTTTTGATTATCTGACCGGATGCACTGAGCATATTGCTCAGCTTATTTTGAAGCTGACAATCATCCAAAGATAAAGTTAACACTTCGAAATTGTACCTTTGAAATTTCAAAATCAATTCCAGATCTCGAATCGCCACATCCACAATATTCGAGTTCTCCAAAATTGTCTTCTTCTCTTGGAATTTTCTACAATTTTCAGATGCAGAATACTCCATGCGATAGAAAGTAAATTTGGGATCCATAAATTGCAAAACTATATTCTTTTCCTTATTTTCAGAAATAATTTCAATTTGCTCGAATTCCGAATCTGGCAATTTTGAATCTTCCAAATCGTCAATAAAATTTCGAAAATCTCGACACACTTGGCGAAGGGACAAACTGAAAGTTTGAAACTTTCCAAAATTTACTAATTAAAAAAAGTACTCACACAGCTTTGAAATCTGAAAATCGTATAAATTTTTCCAGTACACGATCCGGCATTTCCATGATTGATGTCA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>CAGTACATCCTAACATCGAAAGT</pcr_primer_p1>
		<pcr_primer_p2>AGAAAATTCCAAGAGAAGAAGAC</pcr_primer_p2>
		<pcr_amplicon_size>250</pcr_amplicon_size>
		<canonical_amplicon>CAGTACATCCTAACATCGAAAGTACTTGAGAGTGATGGAACACTGTTATACTTATGTGCCTTGTTTTGATTATCTGACCGGATGCACTGAGCATATTGCTCAGCTTATTTTGAAGCTGACAATCATCCAAAGATAAAGTTAACACTTCGAAATTGTACCTTTGAAATTTCAAAATCAATTCCAGATCTCGAATCGCCACATCCACAATATTCGAGTTCTCCAAAATTGTCTTCTTCTCTTGGAATTTTCT</canonical_amplicon>
		<polymorphic_amplicon>CAGTACATCCTAACATCGAAAGTACTTGAGAGTGATGGAACACTGTTATACTTATGTGYCTTGTTTTGATTATCTGACCGGATGCACTGAGCATATTGCTCAGCTTATTTTGAAGCTGACAATCATCCAAAGATAAAGTTAACACTTCGAAATTGTACCTTTGAAATTTCAAAATCAATTCCAGATCTCGAATCGCCACATCCACAATATTCGAGTTCTCCAAAATTGTCTTCTTCTCTTGGAATTTTCT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39858</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>65517</contig_pos>
        <strand>+</strand>
        <context>TATTTTGGAT[A/G]AATGTAAAGC</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>TTTTTCTAATTATCCATATTTTACGAATTTCAAGGTTCTCTATTTTGGAT</left_flank>
        <right_flank>AATGTAAAGCTACTGAATTTATTTCGATGATTTATTTCGATTTATTGATT</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TAAGGAACTATGGAATAACTAGGGAATAAGTATTTCAGAATTTCAGAAGTTTTAAGTTCCAAAAAATTTTCTAAATTGTGTTTTGTGTTTTTTTCATAAAAATATTCAAACCACAAAACAAAACTAGTATATTTTTTCAAACATCAAAAAAAGTGATTTCATTTATTACGAATATTTTTTGAAAAACATGTCTATTTTCCCCCATAATTTTCTTCCAGACTCCATTTTTTGAGAGGTATTTATAAATGTCTGGTTTTTCACGAAAATGTACATTTGTAAACAAATTTTTGATAACAAAAAAATGATTAAGATTTTGCCAATTATTGATTTATCGATTTCGACACTCAGTTTTTGGTCGAATTTTTTATTTTTCATTGTTTTGGCTCGAAAATGGATGAGGTCTAATTTCACAAATTACGCCATGATTTTTCTGATTTTTTTGAATTTAATTTTTCTAATTATCCATATTTTACGAATTTCAAGGTTCTCTATTTTGGATAAATGTAAAGCTACTGAATTTATTTCGATGATTTATTTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTACAATTTTATGCATTTTTATGTTGATTTTTCGAATATTGATCCTTAAAAGTAAAAATTGGAGAAAATCGATAAATCGAGGAGTTTTTGGGCTCTCTGTGATTTTTCTGGTGATTTTGGGATGTGCAATATTCTATGGATTCAATTATCTGAGTGTTGAAATTCGAAATTTAAAAGGAAAGAAAGAGTGAGTTCCTGAAATTCTGGAAGTTTAGAGATTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTCTAAATTCCTGAATTTCTAAATTCCTGAATTTCTAAATTCCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATT</canonical>
            <polymorphic>TAAGGAACTATGGAATAACTAGGGAATAAGTATTTCAGAATTTCAGAAGTTTTAAGTTCCAAAAAATTTTCTAAATTGTGTTTTGTGTTTTTTTCATAAAAATATTCAAACCACAAAACAAAACTAGTATATTTTTTCAAACATCAAAAAAAGTGATTTCATTTATTACGAATATTTTTTGAAAAACATGTCTATTTTCCCCCATAATTTTCTTCCAGACTCCATTTTTTGAGAGGTATTTATAAATGTCTGGTTTTTCACGAAAATGTACATTTGTAAACAAATTTTTGATAACAAAAAAATGATTAAGATTTTGCCAATTATTGATTTATCGATTTCGACACTCAGTTTTTGGTCGAATTTTTTATTTTTCATTGTTTTGGCTCGAAAATGGATGAGGTCTAATTTCACAAATTACGCCATGATTTTTCTGATTTTTTTGAATTTAATTTTTCTAATTATCCATATTTTACGAATTTCAAGGTTCTCTATTTTGGATRAATGTAAAGCTACTGAATTTATTTCGATGATTTATTTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTACAATTTTATGCATTTTTATGTTGATTTTTCGAATATTGATCCTTAAAAGTAAAAATTGGAGAAAATCGATAAATCGAGGAGTTTTTGGGCTCTCTGTGATTTTTCTGGTGATTTTGGGATGTGCAATATTCTATGGATTCAATTATCTGAGTGTTGAAATTCGAAATTTAAAAGGAAAGAAAGAGTGAGTTCCTGAAATTCTGGAAGTTTAGAGATTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTCTAAATTCCTGAATTTCTAAATTCCTGAATTTCTAAATTCCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTACGCCATGATTTTTCT</pcr_primer_p1>
		<pcr_primer_p2>ATCGATTTTCTCCAATTTTTACT</pcr_primer_p2>
		<pcr_amplicon_size>243</pcr_amplicon_size>
		<canonical_amplicon>AAATTACGCCATGATTTTTCTGATTTTTTTGAATTTAATTTTTCTAATTATCCATATTTTACGAATTTCAAGGTTCTCTATTTTGGATAAATGTAAAGCTACTGAATTTATTTCGATGATTTATTTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTACAATTTTATGCATTTTTATGTTGATTTTTCGAATATTGATCCTTAAAAGTAAAAATTGGAGAAAATCGAT</canonical_amplicon>
		<polymorphic_amplicon>AAATTACGCCATGATTTTTCTGATTTTTTTGAATTTAATTTTTCTAATTATCCATATTTTACGAATTTCAAGGTTCTCTATTTTGGATRAATGTAAAGCTACTGAATTTATTTCGATGATTTATTTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTACAATTTTATGCATTTTTATGTTGATTTTTCGAATATTGATCCTTAAAAGTAAAAATTGGAGAAAATCGAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39859</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>65553</contig_pos>
        <strand>+</strand>
        <context>GATGATTTAT[A/T]TCGATTTATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTCTATTTTGGATAAATGTAAAGCTACTGAATTTATTTCGATGATTTAT</left_flank>
        <right_flank>TCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTACA</right_flank>
        <qual_score>140</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>AGAATTTCAGAAGTTTTAAGTTCCAAAAAATTTTCTAAATTGTGTTTTGTGTTTTTTTCATAAAAATATTCAAACCACAAAACAAAACTAGTATATTTTTTCAAACATCAAAAAAAGTGATTTCATTTATTACGAATATTTTTTGAAAAACATGTCTATTTTCCCCCATAATTTTCTTCCAGACTCCATTTTTTGAGAGGTATTTATAAATGTCTGGTTTTTCACGAAAATGTACATTTGTAAACAAATTTTTGATAACAAAAAAATGATTAAGATTTTGCCAATTATTGATTTATCGATTTCGACACTCAGTTTTTGGTCGAATTTTTTATTTTTCATTGTTTTGGCTCGAAAATGGATGAGGTCTAATTTCACAAATTACGCCATGATTTTTCTGATTTTTTTGAATTTAATTTTTCTAATTATCCATATTTTACGAATTTCAAGGTTCTCTATTTTGGATAAATGTAAAGCTACTGAATTTATTTCGATGATTTATTTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTACAATTTTATGCATTTTTATGTTGATTTTTCGAATATTGATCCTTAAAAGTAAAAATTGGAGAAAATCGATAAATCGAGGAGTTTTTGGGCTCTCTGTGATTTTTCTGGTGATTTTGGGATGTGCAATATTCTATGGATTCAATTATCTGAGTGTTGAAATTCGAAATTTAAAAGGAAAGAAAGAGTGAGTTCCTGAAATTCTGGAAGTTTAGAGATTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTCTAAATTCCTGAATTTCTAAATTCCTGAATTTCTAAATTCCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTG</canonical>
            <polymorphic>AGAATTTCAGAAGTTTTAAGTTCCAAAAAATTTTCTAAATTGTGTTTTGTGTTTTTTTCATAAAAATATTCAAACCACAAAACAAAACTAGTATATTTTTTCAAACATCAAAAAAAGTGATTTCATTTATTACGAATATTTTTTGAAAAACATGTCTATTTTCCCCCATAATTTTCTTCCAGACTCCATTTTTTGAGAGGTATTTATAAATGTCTGGTTTTTCACGAAAATGTACATTTGTAAACAAATTTTTGATAACAAAAAAATGATTAAGATTTTGCCAATTATTGATTTATCGATTTCGACACTCAGTTTTTGGTCGAATTTTTTATTTTTCATTGTTTTGGCTCGAAAATGGATGAGGTCTAATTTCACAAATTACGCCATGATTTTTCTGATTTTTTTGAATTTAATTTTTCTAATTATCCATATTTTACGAATTTCAAGGTTCTCTATTTTGGATAAATGTAAAGCTACTGAATTTATTTCGATGATTTATWTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTACAATTTTATGCATTTTTATGTTGATTTTTCGAATATTGATCCTTAAAAGTAAAAATTGGAGAAAATCGATAAATCGAGGAGTTTTTGGGCTCTCTGTGATTTTTCTGGTGATTTTGGGATGTGCAATATTCTATGGATTCAATTATCTGAGTGTTGAAATTCGAAATTTAAAAGGAAAGAAAGAGTGAGTTCCTGAAATTCTGGAAGTTTAGAGATTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTCTAAATTCCTGAATTTCTAAATTCCTGAATTTCTAAATTCCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGAATTTCAAGGTTCTCTATTT</pcr_primer_p1>
		<pcr_primer_p2>GAATCCATAGAATATTGCACATC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ACGAATTTCAAGGTTCTCTATTTTGGATAAATGTAAAGCTACTGAATTTATTTCGATGATTTATTTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTACAATTTTATGCATTTTTATGTTGATTTTTCGAATATTGATCCTTAAAAGTAAAAATTGGAGAAAATCGATAAATCGAGGAGTTTTTGGGCTCTCTGTGATTTTTCTGGTGATTTTGGGATGTGCAATATTCTATGGATTC</canonical_amplicon>
		<polymorphic_amplicon>ACGAATTTCAAGGTTCTCTATTTTGGATAAATGTAAAGCTACTGAATTTATTTCGATGATTTATWTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTACAATTTTATGCATTTTTATGTTGATTTTTCGAATATTGATCCTTAAAAGTAAAAATTGGAGAAAATCGATAAATCGAGGAGTTTTTGGGCTCTCTGTGATTTTTCTGGTGATTTTGGGATGTGCAATATTCTATGGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39860</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>65601</contig_pos>
        <strand>+</strand>
        <context>AAATTGTTCT[A/C]CAAWTTTATG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/C</alleles>
        <left_flank>ATTTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCT</left_flank>
        <right_flank>CAATTTTATGCATTTTTATGTTGATTTTTCGAATATTGATCCTTAAAAGT</right_flank>
        <qual_score>136</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GTGTTTTTTTCATAAAAATATTCAAACCACAAAACAAAACTAGTATATTTTTTCAAACATCAAAAAAAGTGATTTCATTTATTACGAATATTTTTTGAAAAACATGTCTATTTTCCCCCATAATTTTCTTCCAGACTCCATTTTTTGAGAGGTATTTATAAATGTCTGGTTTTTCACGAAAATGTACATTTGTAAACAAATTTTTGATAACAAAAAAATGATTAAGATTTTGCCAATTATTGATTTATCGATTTCGACACTCAGTTTTTGGTCGAATTTTTTATTTTTCATTGTTTTGGCTCGAAAATGGATGAGGTCTAATTTCACAAATTACGCCATGATTTTTCTGATTTTTTTGAATTTAATTTTTCTAATTATCCATATTTTACGAATTTCAAGGTTCTCTATTTTGGATAAATGTAAAGCTACTGAATTTATTTCGATGATTTATTTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTACAATTTTATGCATTTTTATGTTGATTTTTCGAATATTGATCCTTAAAAGTAAAAATTGGAGAAAATCGATAAATCGAGGAGTTTTTGGGCTCTCTGTGATTTTTCTGGTGATTTTGGGATGTGCAATATTCTATGGATTCAATTATCTGAGTGTTGAAATTCGAAATTTAAAAGGAAAGAAAGAGTGAGTTCCTGAAATTCTGGAAGTTTAGAGATTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTCTAAATTCCTGAATTTCTAAATTCCTGAATTTCTAAATTCCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTG</canonical>
            <polymorphic>GTGTTTTTTTCATAAAAATATTCAAACCACAAAACAAAACTAGTATATTTTTTCAAACATCAAAAAAAGTGATTTCATTTATTACGAATATTTTTTGAAAAACATGTCTATTTTCCCCCATAATTTTCTTCCAGACTCCATTTTTTGAGAGGTATTTATAAATGTCTGGTTTTTCACGAAAATGTACATTTGTAAACAAATTTTTGATAACAAAAAAATGATTAAGATTTTGCCAATTATTGATTTATCGATTTCGACACTCAGTTTTTGGTCGAATTTTTTATTTTTCATTGTTTTGGCTCGAAAATGGATGAGGTCTAATTTCACAAATTACGCCATGATTTTTCTGATTTTTTTGAATTTAATTTTTCTAATTATCCATATTTTACGAATTTCAAGGTTCTCTATTTTGGATAAATGTAAAGCTACTGAATTTATTTCGATGATTTATTTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTMCAATTTTATGCATTTTTATGTTGATTTTTCGAATATTGATCCTTAAAAGTAAAAATTGGAGAAAATCGATAAATCGAGGAGTTTTTGGGCTCTCTGTGATTTTTCTGGTGATTTTGGGATGTGCAATATTCTATGGATTCAATTATCTGAGTGTTGAAATTCGAAATTTAAAAGGAAAGAAAGAGTGAGTTCCTGAAATTCTGGAAGTTTAGAGATTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTCTAAATTCCTGAATTTCTAAATTCCTGAATTTCTAAATTCCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGAATTTCAAGGTTCTCTATTT</pcr_primer_p1>
		<pcr_primer_p2>GAATCCATAGAATATTGCACATC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ACGAATTTCAAGGTTCTCTATTTTGGATAAATGTAAAGCTACTGAATTTATTTCGATGATTTATTTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTACAATTTTATGCATTTTTATGTTGATTTTTCGAATATTGATCCTTAAAAGTAAAAATTGGAGAAAATCGATAAATCGAGGAGTTTTTGGGCTCTCTGTGATTTTTCTGGTGATTTTGGGATGTGCAATATTCTATGGATTC</canonical_amplicon>
		<polymorphic_amplicon>ACGAATTTCAAGGTTCTCTATTTTGGATAAATGTAAAGCTACTGAATTTATTTCGATGATTTATTTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTMCAATTTTATGCATTTTTATGTTGATTTTTCGAATATTGATCCTTAAAAGTAAAAATTGGAGAAAATCGATAAATCGAGGAGTTTTTGGGCTCTCTGTGATTTTTCTGGTGATTTTGGGATGTGCAATATTCTATGGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39861</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>65605</contig_pos>
        <strand>+</strand>
        <context>TGTTCTMCAA[A/T]TTTATGCATT</context>
        <canonical_base>T</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>CGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTACAA</left_flank>
        <right_flank>TTTATGCATTTTTATGTTGATTTTTCGAATATTGATCCTTAAAAGTAAAA</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TTTTTTCATAAAAATATTCAAACCACAAAACAAAACTAGTATATTTTTTCAAACATCAAAAAAAGTGATTTCATTTATTACGAATATTTTTTGAAAAACATGTCTATTTTCCCCCATAATTTTCTTCCAGACTCCATTTTTTGAGAGGTATTTATAAATGTCTGGTTTTTCACGAAAATGTACATTTGTAAACAAATTTTTGATAACAAAAAAATGATTAAGATTTTGCCAATTATTGATTTATCGATTTCGACACTCAGTTTTTGGTCGAATTTTTTATTTTTCATTGTTTTGGCTCGAAAATGGATGAGGTCTAATTTCACAAATTACGCCATGATTTTTCTGATTTTTTTGAATTTAATTTTTCTAATTATCCATATTTTACGAATTTCAAGGTTCTCTATTTTGGATAAATGTAAAGCTACTGAATTTATTTCGATGATTTATTTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTACAATTTTATGCATTTTTATGTTGATTTTTCGAATATTGATCCTTAAAAGTAAAAATTGGAGAAAATCGATAAATCGAGGAGTTTTTGGGCTCTCTGTGATTTTTCTGGTGATTTTGGGATGTGCAATATTCTATGGATTCAATTATCTGAGTGTTGAAATTCGAAATTTAAAAGGAAAGAAAGAGTGAGTTCCTGAAATTCTGGAAGTTTAGAGATTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTCTAAATTCCTGAATTTCTAAATTCCTGAATTTCTAAATTCCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATT</canonical>
            <polymorphic>TTTTTTCATAAAAATATTCAAACCACAAAACAAAACTAGTATATTTTTTCAAACATCAAAAAAAGTGATTTCATTTATTACGAATATTTTTTGAAAAACATGTCTATTTTCCCCCATAATTTTCTTCCAGACTCCATTTTTTGAGAGGTATTTATAAATGTCTGGTTTTTCACGAAAATGTACATTTGTAAACAAATTTTTGATAACAAAAAAATGATTAAGATTTTGCCAATTATTGATTTATCGATTTCGACACTCAGTTTTTGGTCGAATTTTTTATTTTTCATTGTTTTGGCTCGAAAATGGATGAGGTCTAATTTCACAAATTACGCCATGATTTTTCTGATTTTTTTGAATTTAATTTTTCTAATTATCCATATTTTACGAATTTCAAGGTTCTCTATTTTGGATAAATGTAAAGCTACTGAATTTATTTCGATGATTTATTTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTACAAWTTTATGCATTTTTATGTTGATTTTTCGAATATTGATCCTTAAAAGTAAAAATTGGAGAAAATCGATAAATCGAGGAGTTTTTGGGCTCTCTGTGATTTTTCTGGTGATTTTGGGATGTGCAATATTCTATGGATTCAATTATCTGAGTGTTGAAATTCGAAATTTAAAAGGAAAGAAAGAGTGAGTTCCTGAAATTCTGGAAGTTTAGAGATTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTCTAAATTCCTGAATTTCTAAATTCCTGAATTTCTAAATTCCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>AATT</site>
                <isoschizomers>
                    <enzyme>Sse9I</enzyme>
                    <enzyme>TasI</enzyme>
                    <enzyme>Tsp509I</enzyme>
                    <enzyme>TspEI</enzyme>
                </isoschizomers>
                <canonical_bands>117 87 77 59 52 45 41 40 36 32 30 24 18 17 16 11 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 5 4</canonical_bands>
                <polymorphic_bands>117 87 77 63 59 45 41 40 36 32 30 24 18 17 16 9 9 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 5 4</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGAATTTCAAGGTTCTCTATTT</pcr_primer_p1>
		<pcr_primer_p2>GAATCCATAGAATATTGCACATC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ACGAATTTCAAGGTTCTCTATTTTGGATAAATGTAAAGCTACTGAATTTATTTCGATGATTTATTTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTACAATTTTATGCATTTTTATGTTGATTTTTCGAATATTGATCCTTAAAAGTAAAAATTGGAGAAAATCGATAAATCGAGGAGTTTTTGGGCTCTCTGTGATTTTTCTGGTGATTTTGGGATGTGCAATATTCTATGGATTC</canonical_amplicon>
		<polymorphic_amplicon>ACGAATTTCAAGGTTCTCTATTTTGGATAAATGTAAAGCTACTGAATTTATTTCGATGATTTATTTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTACAAWTTTATGCATTTTTATGTTGATTTTTCGAATATTGATCCTTAAAAGTAAAAATTGGAGAAAATCGATAAATCGAGGAGTTTTTGGGCTCTCTGTGATTTTTCTGGTGATTTTGGGATGTGCAATATTCTATGGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39862</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>65640</contig_pos>
        <strand>+</strand>
        <context>TCGAATATTG[A/G]TSCTTAAAAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAAATTGTTCTACAATTTTATGCATTTTTATGTTGATTTTTCGAATATTG</left_flank>
        <right_flank>TCCTTAAAAGTAAAAATTGGAGAAAATCGATAAATCGAGGAGTTTTTGGG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>CTAGTATATTTTTTCAAACATCAAAAAAAGTGATTTCATTTATTACGAATATTTTTTGAAAAACATGTCTATTTTCCCCCATAATTTTCTTCCAGACTCCATTTTTTGAGAGGTATTTATAAATGTCTGGTTTTTCACGAAAATGTACATTTGTAAACAAATTTTTGATAACAAAAAAATGATTAAGATTTTGCCAATTATTGATTTATCGATTTCGACACTCAGTTTTTGGTCGAATTTTTTATTTTTCATTGTTTTGGCTCGAAAATGGATGAGGTCTAATTTCACAAATTACGCCATGATTTTTCTGATTTTTTTGAATTTAATTTTTCTAATTATCCATATTTTACGAATTTCAAGGTTCTCTATTTTGGATAAATGTAAAGCTACTGAATTTATTTCGATGATTTATTTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTACAATTTTATGCATTTTTATGTTGATTTTTCGAATATTGATCCTTAAAAGTAAAAATTGGAGAAAATCGATAAATCGAGGAGTTTTTGGGCTCTCTGTGATTTTTCTGGTGATTTTGGGATGTGCAATATTCTATGGATTCAATTATCTGAGTGTTGAAATTCGAAATTTAAAAGGAAAGAAAGAGTGAGTTCCTGAAATTCTGGAAGTTTAGAGATTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTCTAAATTCCTGAATTTCTAAATTCCTGAATTTCTAAATTCCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCT</canonical>
            <polymorphic>CTAGTATATTTTTTCAAACATCAAAAAAAGTGATTTCATTTATTACGAATATTTTTTGAAAAACATGTCTATTTTCCCCCATAATTTTCTTCCAGACTCCATTTTTTGAGAGGTATTTATAAATGTCTGGTTTTTCACGAAAATGTACATTTGTAAACAAATTTTTGATAACAAAAAAATGATTAAGATTTTGCCAATTATTGATTTATCGATTTCGACACTCAGTTTTTGGTCGAATTTTTTATTTTTCATTGTTTTGGCTCGAAAATGGATGAGGTCTAATTTCACAAATTACGCCATGATTTTTCTGATTTTTTTGAATTTAATTTTTCTAATTATCCATATTTTACGAATTTCAAGGTTCTCTATTTTGGATAAATGTAAAGCTACTGAATTTATTTCGATGATTTATTTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTACAATTTTATGCATTTTTATGTTGATTTTTCGAATATTGRTCCTTAAAAGTAAAAATTGGAGAAAATCGATAAATCGAGGAGTTTTTGGGCTCTCTGTGATTTTTCTGGTGATTTTGGGATGTGCAATATTCTATGGATTCAATTATCTGAGTGTTGAAATTCGAAATTTAAAAGGAAAGAAAGAGTGAGTTCCTGAAATTCTGGAAGTTTAGAGATTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTCTAAATTCCTGAATTTCTAAATTCCTGAATTTCTAAATTCCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>502 498</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGAATTTCAAGGTTCTCTATTT</pcr_primer_p1>
		<pcr_primer_p2>GAATCCATAGAATATTGCACATC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ACGAATTTCAAGGTTCTCTATTTTGGATAAATGTAAAGCTACTGAATTTATTTCGATGATTTATTTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTACAATTTTATGCATTTTTATGTTGATTTTTCGAATATTGATCCTTAAAAGTAAAAATTGGAGAAAATCGATAAATCGAGGAGTTTTTGGGCTCTCTGTGATTTTTCTGGTGATTTTGGGATGTGCAATATTCTATGGATTC</canonical_amplicon>
		<polymorphic_amplicon>ACGAATTTCAAGGTTCTCTATTTTGGATAAATGTAAAGCTACTGAATTTATTTCGATGATTTATTTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTACAATTTTATGCATTTTTATGTTGATTTTTCGAATATTGRTCCTTAAAAGTAAAAATTGGAGAAAATCGATAAATCGAGGAGTTTTTGGGCTCTCTGTGATTTTTCTGGTGATTTTGGGATGTGCAATATTCTATGGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39863</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>65642</contig_pos>
        <strand>+</strand>
        <context>GAATATTGRT[C/G]CTTAAAAGTA</context>
        <canonical_base>C</canonical_base>
        <alleles>C/G</alleles>
        <left_flank>AATTGTTCTACAATTTTATGCATTTTTATGTTGATTTTTCGAATATTGAT</left_flank>
        <right_flank>CTTAAAAGTAAAAATTGGAGAAAATCGATAAATCGAGGAGTTTTTGGGCT</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AGTATATTTTTTCAAACATCAAAAAAAGTGATTTCATTTATTACGAATATTTTTTGAAAAACATGTCTATTTTCCCCCATAATTTTCTTCCAGACTCCATTTTTTGAGAGGTATTTATAAATGTCTGGTTTTTCACGAAAATGTACATTTGTAAACAAATTTTTGATAACAAAAAAATGATTAAGATTTTGCCAATTATTGATTTATCGATTTCGACACTCAGTTTTTGGTCGAATTTTTTATTTTTCATTGTTTTGGCTCGAAAATGGATGAGGTCTAATTTCACAAATTACGCCATGATTTTTCTGATTTTTTTGAATTTAATTTTTCTAATTATCCATATTTTACGAATTTCAAGGTTCTCTATTTTGGATAAATGTAAAGCTACTGAATTTATTTCGATGATTTATTTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTACAATTTTATGCATTTTTATGTTGATTTTTCGAATATTGATCCTTAAAAGTAAAAATTGGAGAAAATCGATAAATCGAGGAGTTTTTGGGCTCTCTGTGATTTTTCTGGTGATTTTGGGATGTGCAATATTCTATGGATTCAATTATCTGAGTGTTGAAATTCGAAATTTAAAAGGAAAGAAAGAGTGAGTTCCTGAAATTCTGGAAGTTTAGAGATTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTCTAAATTCCTGAATTTCTAAATTCCTGAATTTCTAAATTCCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGA</canonical>
            <polymorphic>AGTATATTTTTTCAAACATCAAAAAAAGTGATTTCATTTATTACGAATATTTTTTGAAAAACATGTCTATTTTCCCCCATAATTTTCTTCCAGACTCCATTTTTTGAGAGGTATTTATAAATGTCTGGTTTTTCACGAAAATGTACATTTGTAAACAAATTTTTGATAACAAAAAAATGATTAAGATTTTGCCAATTATTGATTTATCGATTTCGACACTCAGTTTTTGGTCGAATTTTTTATTTTTCATTGTTTTGGCTCGAAAATGGATGAGGTCTAATTTCACAAATTACGCCATGATTTTTCTGATTTTTTTGAATTTAATTTTTCTAATTATCCATATTTTACGAATTTCAAGGTTCTCTATTTTGGATAAATGTAAAGCTACTGAATTTATTTCGATGATTTATTTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTACAATTTTATGCATTTTTATGTTGATTTTTCGAATATTGATSCTTAAAAGTAAAAATTGGAGAAAATCGATAAATCGAGGAGTTTTTGGGCTCTCTGTGATTTTTCTGGTGATTTTGGGATGTGCAATATTCTATGGATTCAATTATCTGAGTGTTGAAATTCGAAATTTAAAAGGAAAGAAAGAGTGAGTTCCTGAAATTCTGGAAGTTTAGAGATTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTCTAAATTCCTGAATTTCTAAATTCCTGAATTTCTAAATTCCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGA</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GATC</site>
                <isoschizomers>
                    <enzyme>BfuCI</enzyme>
                    <enzyme>BscFI</enzyme>
                    <enzyme>Bsp143I</enzyme>
                    <enzyme>BstENII</enzyme>
                    <enzyme>BstKTI</enzyme>
                    <enzyme>ChaI</enzyme>
                    <enzyme>DpnI</enzyme>
                    <enzyme>DpnII</enzyme>
                    <enzyme>Kzo9I</enzyme>
                    <enzyme>MboI</enzyme>
                    <enzyme>NdeII</enzyme>
                    <enzyme>Sau3AI</enzyme>
                </isoschizomers>
                <canonical_bands>504 496</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ACGAATTTCAAGGTTCTCTATTT</pcr_primer_p1>
		<pcr_primer_p2>GAATCCATAGAATATTGCACATC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ACGAATTTCAAGGTTCTCTATTTTGGATAAATGTAAAGCTACTGAATTTATTTCGATGATTTATTTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTACAATTTTATGCATTTTTATGTTGATTTTTCGAATATTGATCCTTAAAAGTAAAAATTGGAGAAAATCGATAAATCGAGGAGTTTTTGGGCTCTCTGTGATTTTTCTGGTGATTTTGGGATGTGCAATATTCTATGGATTC</canonical_amplicon>
		<polymorphic_amplicon>ACGAATTTCAAGGTTCTCTATTTTGGATAAATGTAAAGCTACTGAATTTATTTCGATGATTTATTTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTACAATTTTATGCATTTTTATGTTGATTTTTCGAATATTGATSCTTAAAAGTAAAAATTGGAGAAAATCGATAAATCGAGGAGTTTTTGGGCTCTCTGTGATTTTTCTGGTGATTTTGGGATGTGCAATATTCTATGGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39864</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>65672</contig_pos>
        <strand>+</strand>
        <context>GAAAATCGAT[A/T]AATCGAGGAG</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TTGATTTTTCGAATATTGATCCTTAAAAGTAAAAATTGGAGAAAATCGAT</left_flank>
        <right_flank>AATCGAGGAGTTTTTGGGCTCTCTGTGATTTTTCTGGTGATTTTGGGATG</right_flank>
        <qual_score>135</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATTTCATTTATTACGAATATTTTTTGAAAAACATGTCTATTTTCCCCCATAATTTTCTTCCAGACTCCATTTTTTGAGAGGTATTTATAAATGTCTGGTTTTTCACGAAAATGTACATTTGTAAACAAATTTTTGATAACAAAAAAATGATTAAGATTTTGCCAATTATTGATTTATCGATTTCGACACTCAGTTTTTGGTCGAATTTTTTATTTTTCATTGTTTTGGCTCGAAAATGGATGAGGTCTAATTTCACAAATTACGCCATGATTTTTCTGATTTTTTTGAATTTAATTTTTCTAATTATCCATATTTTACGAATTTCAAGGTTCTCTATTTTGGATAAATGTAAAGCTACTGAATTTATTTCGATGATTTATTTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTACAATTTTATGCATTTTTATGTTGATTTTTCGAATATTGATCCTTAAAAGTAAAAATTGGAGAAAATCGATAAATCGAGGAGTTTTTGGGCTCTCTGTGATTTTTCTGGTGATTTTGGGATGTGCAATATTCTATGGATTCAATTATCTGAGTGTTGAAATTCGAAATTTAAAAGGAAAGAAAGAGTGAGTTCCTGAAATTCTGGAAGTTTAGAGATTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTCTAAATTCCTGAATTTCTAAATTCCTGAATTTCTAAATTCCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGCGATTTCTGAATTTCTGAATTT</canonical>
            <polymorphic>ATTTCATTTATTACGAATATTTTTTGAAAAACATGTCTATTTTCCCCCATAATTTTCTTCCAGACTCCATTTTTTGAGAGGTATTTATAAATGTCTGGTTTTTCACGAAAATGTACATTTGTAAACAAATTTTTGATAACAAAAAAATGATTAAGATTTTGCCAATTATTGATTTATCGATTTCGACACTCAGTTTTTGGTCGAATTTTTTATTTTTCATTGTTTTGGCTCGAAAATGGATGAGGTCTAATTTCACAAATTACGCCATGATTTTTCTGATTTTTTTGAATTTAATTTTTCTAATTATCCATATTTTACGAATTTCAAGGTTCTCTATTTTGGATAAATGTAAAGCTACTGAATTTATTTCGATGATTTATTTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTACAATTTTATGCATTTTTATGTTGATTTTTCGAATATTGATCCTTAAAAGTAAAAATTGGAGAAAATCGATWAATCGAGGAGTTTTTGGGCTCTCTGTGATTTTTCTGGTGATTTTGGGATGTGCAATATTCTATGGATTCAATTATCTGAGTGTTGAAATTCGAAATTTAAAAGGAAAGAAAGAGTGAGTTCCTGAAATTCTGGAAGTTTAGAGATTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTCTAAATTCCTGAATTTCTAAATTCCTGAATTTCTAAATTCCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGCGATTTCTGAATTTCTGAATTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ACGAATTTCAAGGTTCTCTATTT</pcr_primer_p1>
		<pcr_primer_p2>GAATCCATAGAATATTGCACATC</pcr_primer_p2>
		<pcr_amplicon_size>253</pcr_amplicon_size>
		<canonical_amplicon>ACGAATTTCAAGGTTCTCTATTTTGGATAAATGTAAAGCTACTGAATTTATTTCGATGATTTATTTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTACAATTTTATGCATTTTTATGTTGATTTTTCGAATATTGATCCTTAAAAGTAAAAATTGGAGAAAATCGATAAATCGAGGAGTTTTTGGGCTCTCTGTGATTTTTCTGGTGATTTTGGGATGTGCAATATTCTATGGATTC</canonical_amplicon>
		<polymorphic_amplicon>ACGAATTTCAAGGTTCTCTATTTTGGATAAATGTAAAGCTACTGAATTTATTTCGATGATTTATTTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTACAATTTTATGCATTTTTATGTTGATTTTTCGAATATTGATCCTTAAAAGTAAAAATTGGAGAAAATCGATWAATCGAGGAGTTTTTGGGCTCTCTGTGATTTTTCTGGTGATTTTGGGATGTGCAATATTCTATGGATTC</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39865</snp_id>
        <super_contig>c014400774.Contig2</super_contig>
        <contig_pos>65714</contig_pos>
        <strand>+</strand>
        <context>TTCTGGTGAT[G/T]TTGGGATGTG</context>
        <canonical_base>T</canonical_base>
        <alleles>G/T</alleles>
        <left_flank>AAATCGATAAATCGAGGAGTTTTTGGGCTCTCTGTGATTTTTCTGGTGAT</left_flank>
        <right_flank>TTGGGATGTGCAATATTCTATGGATTCAATTATCTGAGTGTTGAAATTCG</right_flank>
        <qual_score>99</qual_score>
        <methods>p</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCCCCCATAATTTTCTTCCAGACTCCATTTTTTGAGAGGTATTTATAAATGTCTGGTTTTTCACGAAAATGTACATTTGTAAACAAATTTTTGATAACAAAAAAATGATTAAGATTTTGCCAATTATTGATTTATCGATTTCGACACTCAGTTTTTGGTCGAATTTTTTATTTTTCATTGTTTTGGCTCGAAAATGGATGAGGTCTAATTTCACAAATTACGCCATGATTTTTCTGATTTTTTTGAATTTAATTTTTCTAATTATCCATATTTTACGAATTTCAAGGTTCTCTATTTTGGATAAATGTAAAGCTACTGAATTTATTTCGATGATTTATTTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTACAATTTTATGCATTTTTATGTTGATTTTTCGAATATTGATCCTTAAAAGTAAAAATTGGAGAAAATCGATAAATCGAGGAGTTTTTGGGCTCTCTGTGATTTTTCTGGTGATTTTGGGATGTGCAATATTCTATGGATTCAATTATCTGAGTGTTGAAATTCGAAATTTAAAAGGAAAGAAAGAGTGAGTTCCTGAAATTCTGGAAGTTTAGAGATTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTCTAAATTCCTGAATTTCTAAATTCCTGAATTTCTAAATTCCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGCGATTTCTGAATTTCTGAATTTTTTGCGATTTCTGAATTTCTGAATTTTTTGCGATTTCTGAAT</canonical>
            <polymorphic>TCCCCCATAATTTTCTTCCAGACTCCATTTTTTGAGAGGTATTTATAAATGTCTGGTTTTTCACGAAAATGTACATTTGTAAACAAATTTTTGATAACAAAAAAATGATTAAGATTTTGCCAATTATTGATTTATCGATTTCGACACTCAGTTTTTGGTCGAATTTTTTATTTTTCATTGTTTTGGCTCGAAAATGGATGAGGTCTAATTTCACAAATTACGCCATGATTTTTCTGATTTTTTTGAATTTAATTTTTCTAATTATCCATATTTTACGAATTTCAAGGTTCTCTATTTTGGATAAATGTAAAGCTACTGAATTTATTTCGATGATTTATTTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTACAATTTTATGCATTTTTATGTTGATTTTTCGAATATTGATCCTTAAAAGTAAAAATTGGAGAAAATCGATAAATCGAGGAGTTTTTGGGCTCTCTGTGATTTTTCTGGTGATKTTGGGATGTGCAATATTCTATGGATTCAATTATCTGAGTGTTGAAATTCGAAATTTAAAAGGAAAGAAAGAGTGAGTTCCTGAAATTCTGGAAGTTTAGAGATTTAAAATTTTAGAATTTTAGAGTTTTAGAATTTCTAAATTCCTGAATTTCTAAATTCCTGAATTTCTAAATTCCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTAAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTCTGAATTTTTTGCGATTTCTGAATTTCTGAATTTTTTGCGATTTCTGAATTTCTGAATTTTTTGCGATTTCTGAAT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AGCTACTGAATTTATTTCGATGA</pcr_primer_p1>
		<pcr_primer_p2>AATTTCGAATTTCAACACTCAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>AGCTACTGAATTTATTTCGATGATTTATTTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTACAATTTTATGCATTTTTATGTTGATTTTTCGAATATTGATCCTTAAAAGTAAAAATTGGAGAAAATCGATAAATCGAGGAGTTTTTGGGCTCTCTGTGATTTTTCTGGTGATTTTGGGATGTGCAATATTCTATGGATTCAATTATCTGAGTGTTGAAATTCGAAATT</canonical_amplicon>
		<polymorphic_amplicon>AGCTACTGAATTTATTTCGATGATTTATTTCGATTTATTGATTTCTTTTTTACATGATTTCTCAAAAAATTGTTCTACAATTTTATGCATTTTTATGTTGATTTTTCGAATATTGATCCTTAAAAGTAAAAATTGGAGAAAATCGATAAATCGAGGAGTTTTTGGGCTCTCTGTGATTTTTCTGGTGATKTTGGGATGTGCAATATTCTATGGATTCAATTATCTGAGTGTTGAAATTCGAAATT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39866</snp_id>
        <super_contig>c014500235.Contig1</super_contig>
        <contig_pos>7089</contig_pos>
        <strand></strand>
        <context>tttcaggggg[G/A]aattttgaac</context>
        <canonical_base>G</canonical_base>
        <alleles>G/A</alleles>
        <left_flank>TTTGATGAAAATCTTGCTAAATTTAGGTGAAATTGACAGATTTCAGGGGG</left_flank>
        <right_flank>AATTTTGAACGAAAATTCGTCGAATTTTTCGATGCAAAATTTCTGAAAAA</right_flank>
        <qual_score>39</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TCAACTACTGTGAGGGACATCAAAAGAGAAATTCAGAAAGTTTATTGGAAAATATTTATCAGTGGGTTTAGGGCTCTGATTAGGGTTCTTCACACAATATACAACAATTAATATTATAAATTCAGAATATCCTAATCTTACCAACTGCCAGCTAATGTGATTTTCTTTTAATTTGTGAAAAATTTCAAATATACGGAAGAATAAGAATTTTTGAGTTTCCAAATTTCAGGATATCGTAAAACCTGTATTAGAAGGGCCCCTTTAGTAGAAGGGTCCCTCTAACAGAAGGGCCCTCCGAGAGGGGCTTGGAAAAATAGAAGGACCCTCTGTGAAAAATGACCCCCCCCCCCTTTAAAATGTGTTTTGAAATCAGAAAATTTTAGTACTTTTTGAGTGGAAAATATTTCGAGAACTCCACAATTTAATATAAATTTGTTGAAACTCTATTTTTTGATGAAAATCTTGCTAAATTTAGGTGAAATTGACAGATTTCAGGGGGGAATTTTGAACGAAAATTCGTCGAATTTTTCGATGCAAAATTTCTGAAAAAACTGGCCGGAAAAATAGAAGGGCTCCCTCTAATTGAAGGGCCCCTGTAATAAAAGAGCCCTCCGGAGGTATCTCGGAACAATAGAAGGGCCGCCCTTCTAATACAGGTTTTACGGTATCTGAACTTCTGGTATTTTTGAATTTTGCAGGATAAAAATCTGAAATAATATTTGAAATTCGAAATTTGTTTTGGAAAATTTAGAACTTGGAAAAATCAGAAAACTATAATGTTGTGGAATTTTGAAAAAGTGGTATTGCATTCCTGTTTTCAATATCTGAAATTCCAATTTTTCGTACTTCTAAAGTTTTTTTGCAACTTCAAAAATTCAAAAAACAAGGCAGTACATAACATTTTCAACTCATTCTCCCTTTCCAACTACATTATGAATTATCAATATGCTTATCAACCCAATTTCTTATCAATTGTAAACTTCCATGTACATTGCTAGCT</canonical>
            <polymorphic>TCAACTACTGTGAGGGACATCAAAAGAGAAATTCAGAAAGTTTATTGGAAAATATTTATCAGTGGGTTTAGGGCTCTGATTAGGGTTCTTCACACAATATACAACAATTAATATTATAAATTCAGAATATCCTAATCTTACCAACTGCCAGCTAATGTGATTTTCTTTTAATTTGTGAAAAATTTCAAATATACGGAAGAATAAGAATTTTTGAGTTTCCAAATTTCAGGATATCGTAAAACCTGTATTAGAAGGGCCCCTTTAGTAGAAGGGTCCCTCTAACAGAAGGGCCCTCCGAGAGGGGCTTGGAAAAATAGAAGGACCCTCTGTGAAAAATGACCCCCCCCCCCTTTAAAATGTGTTTTGAAATCAGAAAATTTTAGTACTTTTTGAGTGGAAAATATTTCGAGAACTCCACAATTTAATATAAATTTGTTGAAACTCTATTTTTTGATGAAAATCTTGCTAAATTTAGGTGAAATTGACAGATTTCAGGGGGRAATTTTGAACGAAAATTCGTCGAATTTTTCGATGCAAAATTTCTGAAAAAACTGGCCGGAAAAATAGAAGGGCTCCCTCTAATTGAAGGGCCCCTGTAATAAAAGAGCCCTCCGGAGGTATCTCGGAACAATAGAAGGGCCGCCCTTCTAATACAGGTTTTACGGTATCTGAACTTCTGGTATTTTTGAATTTTGCAGGATAAAAATCTGAAATAATATTTGAAATTCGAAATTTGTTTTGGAAAATTTAGAACTTGGAAAAATCAGAAAACTATAATGTTGTGGAATTTTGAAAAAGTGGTATTGCATTCCTGTTTTCAATATCTGAAATTCCAATTTTTCGTACTTCTAAAGTTTTTTTGCAACTTCAAAAATTCAAAAAACAAGGCAGTACATAACATTTTCAACTCATTCTCCCTTTCCAACTACATTATGAATTATCAATATGCTTATCAACCCAATTTCTTATCAATTGTAAACTTCCATGTACATTGCTAGCT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>RAATTY</site>
                <isoschizomers>
                    <enzyme>AcsI</enzyme>
                    <enzyme>ApoI</enzyme>
                    <enzyme>XapI</enzyme>
                </isoschizomers>
                <canonical_bands>154 151 128 89 62 54 44 43 41 39 35 32 29 25 16 15 14 13 9 7</canonical_bands>
                <polymorphic_bands>154 151 128 89 62 54 45 44 43 41 39 35 29 25 16 15 14 9 7</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACCCTCTGTGAAAAATGAC</pcr_primer_p1>
		<pcr_primer_p2>CAAAATTCAAAAATACCAGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>GACCCTCTGTGAAAAATGACCCCCCCCCCCTTTAAAATGTGTTTTGAAATCAGAAAATTTTAGTACTTTTTGAGTGGAAAATATTTCGAGAACTCCACAATTTAATATAAATTTGTTGAAACTCTATTTTTTGATGAAAATCTTGCTAAATTTAGGTGAAATTGACAGATTTCAGGGGGGAATTTTGAACGAAAATTCGTCGAATTTTTCGATGCAAAATTTCTGAAAAAACTGGCCGGAAAAATAGAAGGGCTCCCTCTAATTGAAGGGCCCCTGTAATAAAAGAGCCCTCCGGAGGTATCTCGGAACAATAGAAGGGCCGCCCTTCTAATACAGGTTTTACGGTATCTGAACTTCTGGTATTTTTGAATTTTG</canonical_amplicon>
		<polymorphic_amplicon>GACCCTCTGTGAAAAATGACCCCCCCCCCCTTTAAAATGTGTTTTGAAATCAGAAAATTTTAGTACTTTTTGAGTGGAAAATATTTCGAGAACTCCACAATTTAATATAAATTTGTTGAAACTCTATTTTTTGATGAAAATCTTGCTAAATTTAGGTGAAATTGACAGATTTCAGGGGGRAATTTTGAACGAAAATTCGTCGAATTTTTCGATGCAAAATTTCTGAAAAAACTGGCCGGAAAAATAGAAGGGCTCCCTCTAATTGAAGGGCCCCTGTAATAAAAGAGCCCTCCGGAGGTATCTCGGAACAATAGAAGGGCCGCCCTTCTAATACAGGTTTTACGGTATCTGAACTTCTGGTATTTTTGAATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39867</snp_id>
        <super_contig>c014500235.Contig1</super_contig>
        <contig_pos>7145</contig_pos>
        <strand></strand>
        <context>aaaaaactgg[C/A]cggaaaaata</context>
        <canonical_base>C</canonical_base>
        <alleles>C/A</alleles>
        <left_flank>TGAACGAAAATTCGTCGAATTTTTCGATGCAAAATTTCTGAAAAAACTGG</left_flank>
        <right_flank>CGGAAAAATAGAAGGGCTCCCTCTAATTGAAGGGCCCCTGTAATAAAAGA</right_flank>
        <qual_score>44</qual_score>
        <methods>m</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>TATCAGTGGGTTTAGGGCTCTGATTAGGGTTCTTCACACAATATACAACAATTAATATTATAAATTCAGAATATCCTAATCTTACCAACTGCCAGCTAATGTGATTTTCTTTTAATTTGTGAAAAATTTCAAATATACGGAAGAATAAGAATTTTTGAGTTTCCAAATTTCAGGATATCGTAAAACCTGTATTAGAAGGGCCCCTTTAGTAGAAGGGTCCCTCTAACAGAAGGGCCCTCCGAGAGGGGCTTGGAAAAATAGAAGGACCCTCTGTGAAAAATGACCCCCCCCCCCTTTAAAATGTGTTTTGAAATCAGAAAATTTTAGTACTTTTTGAGTGGAAAATATTTCGAGAACTCCACAATTTAATATAAATTTGTTGAAACTCTATTTTTTGATGAAAATCTTGCTAAATTTAGGTGAAATTGACAGATTTCAGGGGGGAATTTTGAACGAAAATTCGTCGAATTTTTCGATGCAAAATTTCTGAAAAAACTGGCCGGAAAAATAGAAGGGCTCCCTCTAATTGAAGGGCCCCTGTAATAAAAGAGCCCTCCGGAGGTATCTCGGAACAATAGAAGGGCCGCCCTTCTAATACAGGTTTTACGGTATCTGAACTTCTGGTATTTTTGAATTTTGCAGGATAAAAATCTGAAATAATATTTGAAATTCGAAATTTGTTTTGGAAAATTTAGAACTTGGAAAAATCAGAAAACTATAATGTTGTGGAATTTTGAAAAAGTGGTATTGCATTCCTGTTTTCAATATCTGAAATTCCAATTTTTCGTACTTCTAAAGTTTTTTTGCAACTTCAAAAATTCAAAAAACAAGGCAGTACATAACATTTTCAACTCATTCTCCCTTTCCAACTACATTATGAATTATCAATATGCTTATCAACCCAATTTCTTATCAATTGTAAACTTCCATGTACATTGCTAGCTCTAAATTTTTTGTCTCTCCTTTTTTGTTTTCTTCCTCATTCATTTGTGTAAAATTC</canonical>
            <polymorphic>TATCAGTGGGTTTAGGGCTCTGATTAGGGTTCTTCACACAATATACAACAATTAATATTATAAATTCAGAATATCCTAATCTTACCAACTGCCAGCTAATGTGATTTTCTTTTAATTTGTGAAAAATTTCAAATATACGGAAGAATAAGAATTTTTGAGTTTCCAAATTTCAGGATATCGTAAAACCTGTATTAGAAGGGCCCCTTTAGTAGAAGGGTCCCTCTAACAGAAGGGCCCTCCGAGAGGGGCTTGGAAAAATAGAAGGACCCTCTGTGAAAAATGACCCCCCCCCCCTTTAAAATGTGTTTTGAAATCAGAAAATTTTAGTACTTTTTGAGTGGAAAATATTTCGAGAACTCCACAATTTAATATAAATTTGTTGAAACTCTATTTTTTGATGAAAATCTTGCTAAATTTAGGTGAAATTGACAGATTTCAGGGGGGAATTTTGAACGAAAATTCGTCGAATTTTTCGATGCAAAATTTCTGAAAAAACTGGMCGGAAAAATAGAAGGGCTCCCTCTAATTGAAGGGCCCCTGTAATAAAAGAGCCCTCCGGAGGTATCTCGGAACAATAGAAGGGCCGCCCTTCTAATACAGGTTTTACGGTATCTGAACTTCTGGTATTTTTGAATTTTGCAGGATAAAAATCTGAAATAATATTTGAAATTCGAAATTTGTTTTGGAAAATTTAGAACTTGGAAAAATCAGAAAACTATAATGTTGTGGAATTTTGAAAAAGTGGTATTGCATTCCTGTTTTCAATATCTGAAATTCCAATTTTTCGTACTTCTAAAGTTTTTTTGCAACTTCAAAAATTCAAAAAACAAGGCAGTACATAACATTTTCAACTCATTCTCCCTTTCCAACTACATTATGAATTATCAATATGCTTATCAACCCAATTTCTTATCAATTGTAAACTTCCATGTACATTGCTAGCTCTAAATTTTTTGTCTCTCCTTTTTTGTTTTCTTCCTCATTCATTTGTGTAAAATTC</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>GGCC</site>
                <isoschizomers>
                    <enzyme>BshFI</enzyme>
                    <enzyme>BshI</enzyme>
                    <enzyme>BsuRI</enzyme>
                    <enzyme>HaeIII</enzyme>
                    <enzyme>PalI</enzyme>
                </isoschizomers>
                <canonical_bands>417 265 200 49 35 34</canonical_bands>
                <polymorphic_bands>417 300 200 49 34</polymorphic_bands>
            </assay>
            <assay>
                <site>CCGG</site>
                <isoschizomers>
                    <enzyme>BsiSI</enzyme>
                    <enzyme>HapII</enzyme>
                    <enzyme>HpaII</enzyme>
                    <enzyme>MspI</enzyme>
                </isoschizomers>
                <canonical_bands>500 444 56</canonical_bands>
                <polymorphic_bands>556 444</polymorphic_bands>
            </assay>
            <assay>
                <site>YGGCCR</site>
                <isoschizomers>
                    <enzyme>CfrI</enzyme>
                    <enzyme>EaeI</enzyme>
                </isoschizomers>
                <canonical_bands>503 497</canonical_bands>
                <polymorphic_bands>1000</polymorphic_bands>
            </assay>
            <assay>
                <site>RGCY</site>
                <isoschizomers>
                    <enzyme>CviJI</enzyme>
                    <enzyme>CviTI</enzyme>
                </isoschizomers>
                <canonical_bands>359 251 105 78 58 34 32 18 17 17 17 14</canonical_bands>
                <polymorphic_bands>359 268 105 78 58 34 32 18 17 17 14</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>GACCCTCTGTGAAAAATGAC</pcr_primer_p1>
		<pcr_primer_p2>CAAAATTCAAAAATACCAGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>GACCCTCTGTGAAAAATGACCCCCCCCCCCTTTAAAATGTGTTTTGAAATCAGAAAATTTTAGTACTTTTTGAGTGGAAAATATTTCGAGAACTCCACAATTTAATATAAATTTGTTGAAACTCTATTTTTTGATGAAAATCTTGCTAAATTTAGGTGAAATTGACAGATTTCAGGGGGGAATTTTGAACGAAAATTCGTCGAATTTTTCGATGCAAAATTTCTGAAAAAACTGGCCGGAAAAATAGAAGGGCTCCCTCTAATTGAAGGGCCCCTGTAATAAAAGAGCCCTCCGGAGGTATCTCGGAACAATAGAAGGGCCGCCCTTCTAATACAGGTTTTACGGTATCTGAACTTCTGGTATTTTTGAATTTTG</canonical_amplicon>
		<polymorphic_amplicon>GACCCTCTGTGAAAAATGACCCCCCCCCCCTTTAAAATGTGTTTTGAAATCAGAAAATTTTAGTACTTTTTGAGTGGAAAATATTTCGAGAACTCCACAATTTAATATAAATTTGTTGAAACTCTATTTTTTGATGAAAATCTTGCTAAATTTAGGTGAAATTGACAGATTTCAGGGGGGAATTTTGAACGAAAATTCGTCGAATTTTTCGATGCAAAATTTCTGAAAAAACTGGMCGGAAAAATAGAAGGGCTCCCTCTAATTGAAGGGCCCCTGTAATAAAAGAGCCCTCCGGAGGTATCTCGGAACAATAGAAGGGCCGCCCTTCTAATACAGGTTTTACGGTATCTGAACTTCTGGTATTTTTGAATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39868</snp_id>
        <super_contig>c014500235.Contig1</super_contig>
        <contig_pos>7210</contig_pos>
        <strand></strand>
        <context>tccggaggta[T/C]ctcggaacaa</context>
        <canonical_base>T</canonical_base>
        <alleles>T/C</alleles>
        <left_flank>GGCTCCCTCTAATTGAAGGGCCCCTGTAATAAAAGAGCCCTCCGGAGGTA</left_flank>
        <right_flank>CTCGGAACAATAGAAGGGCCGCCCTTCTAATACAGGTTTTACGGTATCTG</right_flank>
        <qual_score>43</qual_score>
        <methods>m</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TCAGAATATCCTAATCTTACCAACTGCCAGCTAATGTGATTTTCTTTTAATTTGTGAAAAATTTCAAATATACGGAAGAATAAGAATTTTTGAGTTTCCAAATTTCAGGATATCGTAAAACCTGTATTAGAAGGGCCCCTTTAGTAGAAGGGTCCCTCTAACAGAAGGGCCCTCCGAGAGGGGCTTGGAAAAATAGAAGGACCCTCTGTGAAAAATGACCCCCCCCCCCTTTAAAATGTGTTTTGAAATCAGAAAATTTTAGTACTTTTTGAGTGGAAAATATTTCGAGAACTCCACAATTTAATATAAATTTGTTGAAACTCTATTTTTTGATGAAAATCTTGCTAAATTTAGGTGAAATTGACAGATTTCAGGGGGGAATTTTGAACGAAAATTCGTCGAATTTTTCGATGCAAAATTTCTGAAAAAACTGGCCGGAAAAATAGAAGGGCTCCCTCTAATTGAAGGGCCCCTGTAATAAAAGAGCCCTCCGGAGGTATCTCGGAACAATAGAAGGGCCGCCCTTCTAATACAGGTTTTACGGTATCTGAACTTCTGGTATTTTTGAATTTTGCAGGATAAAAATCTGAAATAATATTTGAAATTCGAAATTTGTTTTGGAAAATTTAGAACTTGGAAAAATCAGAAAACTATAATGTTGTGGAATTTTGAAAAAGTGGTATTGCATTCCTGTTTTCAATATCTGAAATTCCAATTTTTCGTACTTCTAAAGTTTTTTTGCAACTTCAAAAATTCAAAAAACAAGGCAGTACATAACATTTTCAACTCATTCTCCCTTTCCAACTACATTATGAATTATCAATATGCTTATCAACCCAATTTCTTATCAATTGTAAACTTCCATGTACATTGCTAGCTCTAAATTTTTTGTCTCTCCTTTTTTGTTTTCTTCCTCATTCATTTGTGTAAAATTCTGCTTTATTCAATTTTTGAGTGCATCACACGTTAATTGAGGAAGAAAATGCATTTTTCTGAAAAA</canonical>
            <polymorphic>TCAGAATATCCTAATCTTACCAACTGCCAGCTAATGTGATTTTCTTTTAATTTGTGAAAAATTTCAAATATACGGAAGAATAAGAATTTTTGAGTTTCCAAATTTCAGGATATCGTAAAACCTGTATTAGAAGGGCCCCTTTAGTAGAAGGGTCCCTCTAACAGAAGGGCCCTCCGAGAGGGGCTTGGAAAAATAGAAGGACCCTCTGTGAAAAATGACCCCCCCCCCCTTTAAAATGTGTTTTGAAATCAGAAAATTTTAGTACTTTTTGAGTGGAAAATATTTCGAGAACTCCACAATTTAATATAAATTTGTTGAAACTCTATTTTTTGATGAAAATCTTGCTAAATTTAGGTGAAATTGACAGATTTCAGGGGGGAATTTTGAACGAAAATTCGTCGAATTTTTCGATGCAAAATTTCTGAAAAAACTGGCCGGAAAAATAGAAGGGCTCCCTCTAATTGAAGGGCCCCTGTAATAAAAGAGCCCTCCGGAGGTAYCTCGGAACAATAGAAGGGCCGCCCTTCTAATACAGGTTTTACGGTATCTGAACTTCTGGTATTTTTGAATTTTGCAGGATAAAAATCTGAAATAATATTTGAAATTCGAAATTTGTTTTGGAAAATTTAGAACTTGGAAAAATCAGAAAACTATAATGTTGTGGAATTTTGAAAAAGTGGTATTGCATTCCTGTTTTCAATATCTGAAATTCCAATTTTTCGTACTTCTAAAGTTTTTTTGCAACTTCAAAAATTCAAAAAACAAGGCAGTACATAACATTTTCAACTCATTCTCCCTTTCCAACTACATTATGAATTATCAATATGCTTATCAACCCAATTTCTTATCAATTGTAAACTTCCATGTACATTGCTAGCTCTAAATTTTTTGTCTCTCCTTTTTTGTTTTCTTCCTCATTCATTTGTGTAAAATTCTGCTTTATTCAATTTTTGAGTGCATCACACGTTAATTGAGGAAGAAAATGCATTTTTCTGAAAAA</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>GACCCTCTGTGAAAAATGAC</pcr_primer_p1>
		<pcr_primer_p2>CAAAATTCAAAAATACCAGAAGT</pcr_primer_p2>
		<pcr_amplicon_size>375</pcr_amplicon_size>
		<canonical_amplicon>GACCCTCTGTGAAAAATGACCCCCCCCCCCTTTAAAATGTGTTTTGAAATCAGAAAATTTTAGTACTTTTTGAGTGGAAAATATTTCGAGAACTCCACAATTTAATATAAATTTGTTGAAACTCTATTTTTTGATGAAAATCTTGCTAAATTTAGGTGAAATTGACAGATTTCAGGGGGGAATTTTGAACGAAAATTCGTCGAATTTTTCGATGCAAAATTTCTGAAAAAACTGGCCGGAAAAATAGAAGGGCTCCCTCTAATTGAAGGGCCCCTGTAATAAAAGAGCCCTCCGGAGGTATCTCGGAACAATAGAAGGGCCGCCCTTCTAATACAGGTTTTACGGTATCTGAACTTCTGGTATTTTTGAATTTTG</canonical_amplicon>
		<polymorphic_amplicon>GACCCTCTGTGAAAAATGACCCCCCCCCCCTTTAAAATGTGTTTTGAAATCAGAAAATTTTAGTACTTTTTGAGTGGAAAATATTTCGAGAACTCCACAATTTAATATAAATTTGTTGAAACTCTATTTTTTGATGAAAATCTTGCTAAATTTAGGTGAAATTGACAGATTTCAGGGGGGAATTTTGAACGAAAATTCGTCGAATTTTTCGATGCAAAATTTCTGAAAAAACTGGCCGGAAAAATAGAAGGGCTCCCTCTAATTGAAGGGCCCCTGTAATAAAAGAGCCCTCCGGAGGTAYCTCGGAACAATAGAAGGGCCGCCCTTCTAATACAGGTTTTACGGTATCTGAACTTCTGGTATTTTTGAATTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39869</snp_id>
        <super_contig>c014500235.Contig1</super_contig>
        <contig_pos>7350</contig_pos>
        <strand>+</strand>
        <context>GAACTTGGAA[A/G]AATCAGAAAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>AAATAATATTTGAAATTCGAAATTTGTTTTGGAAAATTTAGAACTTGGAA</left_flank>
        <right_flank>AATCAGAAAACTATAATGTTGTGGAATTTTGAAAAAGTGGTATTGCATTC</right_flank>
        <qual_score>148</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTAGTAGAAGGGTCCCTCTAACAGAAGGGCCCTCCGAGAGGGGCTTGGAAAAATAGAAGGACCCTCTGTGAAAAATGACCCCCCCCCCCTTTAAAATGTGTTTTGAAATCAGAAAATTTTAGTACTTTTTGAGTGGAAAATATTTCGAGAACTCCACAATTTAATATAAATTTGTTGAAACTCTATTTTTTGATGAAAATCTTGCTAAATTTAGGTGAAATTGACAGATTTCAGGGGGGAATTTTGAACGAAAATTCGTCGAATTTTTCGATGCAAAATTTCTGAAAAAACTGGCCGGAAAAATAGAAGGGCTCCCTCTAATTGAAGGGCCCCTGTAATAAAAGAGCCCTCCGGAGGTATCTCGGAACAATAGAAGGGCCGCCCTTCTAATACAGGTTTTACGGTATCTGAACTTCTGGTATTTTTGAATTTTGCAGGATAAAAATCTGAAATAATATTTGAAATTCGAAATTTGTTTTGGAAAATTTAGAACTTGGAAAAATCAGAAAACTATAATGTTGTGGAATTTTGAAAAAGTGGTATTGCATTCCTGTTTTCAATATCTGAAATTCCAATTTTTCGTACTTCTAAAGTTTTTTTGCAACTTCAAAAATTCAAAAAACAAGGCAGTACATAACATTTTCAACTCATTCTCCCTTTCCAACTACATTATGAATTATCAATATGCTTATCAACCCAATTTCTTATCAATTGTAAACTTCCATGTACATTGCTAGCTCTAAATTTTTTGTCTCTCCTTTTTTGTTTTCTTCCTCATTCATTTGTGTAAAATTCTGCTTTATTCAATTTTTGAGTGCATCACACGTTAATTGAGGAAGAAAATGCATTTTTCTGAAAAAAAAAAATTGAACCTCAAACTTCGGTTTATTTTTGCTGCAAATTCCAAAAATTACCTTTTGATTTTATTAAAAATTTTGAAACTTTTGTGAAAATTTTGAGAAAGAAAAATTCAATTTTCCGCCATATTTTCCTTTGAATT</canonical>
            <polymorphic>TTAGTAGAAGGGTCCCTCTAACAGAAGGGCCCTCCGAGAGGGGCTTGGAAAAATAGAAGGACCCTCTGTGAAAAATGACCCCCCCCCCCTTTAAAATGTGTTTTGAAATCAGAAAATTTTAGTACTTTTTGAGTGGAAAATATTTCGAGAACTCCACAATTTAATATAAATTTGTTGAAACTCTATTTTTTGATGAAAATCTTGCTAAATTTAGGTGAAATTGACAGATTTCAGGGGGGAATTTTGAACGAAAATTCGTCGAATTTTTCGATGCAAAATTTCTGAAAAAACTGGCCGGAAAAATAGAAGGGCTCCCTCTAATTGAAGGGCCCCTGTAATAAAAGAGCCCTCCGGAGGTATCTCGGAACAATAGAAGGGCCGCCCTTCTAATACAGGTTTTACGGTATCTGAACTTCTGGTATTTTTGAATTTTGCAGGATAAAAATCTGAAATAATATTTGAAATTCGAAATTTGTTTTGGAAAATTTAGAACTTGGAARAATCAGAAAACTATAATGTTGTGGAATTTTGAAAAAGTGGTATTGCATTCCTGTTTTCAATATCTGAAATTCCAATTTTTCGTACTTCTAAAGTTTTTTTGCAACTTCAAAAATTCAAAAAACAAGGCAGTACATAACATTTTCAACTCATTCTCCCTTTCCAACTACATTATGAATTATCAATATGCTTATCAACCCAATTTCTTATCAATTGTAAACTTCCATGTACATTGCTAGCTCTAAATTTTTTGTCTCTCCTTTTTTGTTTTCTTCCTCATTCATTTGTGTAAAATTCTGCTTTATTCAATTTTTGAGTGCATCACACGTTAATTGAGGAAGAAAATGCATTTTTCTGAAAAAAAAAAATTGAACCTCAAACTTCGGTTTATTTTTGCTGCAAATTCCAAAAATTACCTTTTGATTTTATTAAAAATTTTGAAACTTTTGTGAAAATTTTGAGAAAGAAAAATTCAATTTTCCGCCATATTTTCCTTTGAATT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAATTTTGCAGGATAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATAATGTAGTTGGAAAGGGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGAATTTTGCAGGATAAAAATCTGAAATAATATTTGAAATTCGAAATTTGTTTTGGAAAATTTAGAACTTGGAAAAATCAGAAAACTATAATGTTGTGGAATTTTGAAAAAGTGGTATTGCATTCCTGTTTTCAATATCTGAAATTCCAATTTTTCGTACTTCTAAAGTTTTTTTGCAACTTCAAAAATTCAAAAAACAAGGCAGTACATAACATTTTCAACTCATTCTCCCTTTCCAACTACATTAT</canonical_amplicon>
		<polymorphic_amplicon>TTGAATTTTGCAGGATAAAAATCTGAAATAATATTTGAAATTCGAAATTTGTTTTGGAAAATTTAGAACTTGGAARAATCAGAAAACTATAATGTTGTGGAATTTTGAAAAAGTGGTATTGCATTCCTGTTTTCAATATCTGAAATTCCAATTTTTCGTACTTCTAAAGTTTTTTTGCAACTTCAAAAATTCAAAAAACAAGGCAGTACATAACATTTTCAACTCATTCTCCCTTTCCAACTACATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39870</snp_id>
        <super_contig>c014500235.Contig1</super_contig>
        <contig_pos>7392</contig_pos>
        <strand>+</strand>
        <context>AAAAAGTGGT[A/G]TTGCATTCCT</context>
        <canonical_base>A</canonical_base>
        <alleles>A/G</alleles>
        <left_flank>ACTTGGAAAAATCAGAAAACTATAATGTTGTGGAATTTTGAAAAAGTGGT</left_flank>
        <right_flank>TTGCATTCCTGTTTTCAATATCTGAAATTCCAATTTTTCGTACTTCTAAA</right_flank>
        <qual_score>145</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>GCTTGGAAAAATAGAAGGACCCTCTGTGAAAAATGACCCCCCCCCCCTTTAAAATGTGTTTTGAAATCAGAAAATTTTAGTACTTTTTGAGTGGAAAATATTTCGAGAACTCCACAATTTAATATAAATTTGTTGAAACTCTATTTTTTGATGAAAATCTTGCTAAATTTAGGTGAAATTGACAGATTTCAGGGGGGAATTTTGAACGAAAATTCGTCGAATTTTTCGATGCAAAATTTCTGAAAAAACTGGCCGGAAAAATAGAAGGGCTCCCTCTAATTGAAGGGCCCCTGTAATAAAAGAGCCCTCCGGAGGTATCTCGGAACAATAGAAGGGCCGCCCTTCTAATACAGGTTTTACGGTATCTGAACTTCTGGTATTTTTGAATTTTGCAGGATAAAAATCTGAAATAATATTTGAAATTCGAAATTTGTTTTGGAAAATTTAGAACTTGGAAAAATCAGAAAACTATAATGTTGTGGAATTTTGAAAAAGTGGTATTGCATTCCTGTTTTCAATATCTGAAATTCCAATTTTTCGTACTTCTAAAGTTTTTTTGCAACTTCAAAAATTCAAAAAACAAGGCAGTACATAACATTTTCAACTCATTCTCCCTTTCCAACTACATTATGAATTATCAATATGCTTATCAACCCAATTTCTTATCAATTGTAAACTTCCATGTACATTGCTAGCTCTAAATTTTTTGTCTCTCCTTTTTTGTTTTCTTCCTCATTCATTTGTGTAAAATTCTGCTTTATTCAATTTTTGAGTGCATCACACGTTAATTGAGGAAGAAAATGCATTTTTCTGAAAAAAAAAAATTGAACCTCAAACTTCGGTTTATTTTTGCTGCAAATTCCAAAAATTACCTTTTGATTTTATTAAAAATTTTGAAACTTTTGTGAAAATTTTGAGAAAGAAAAATTCAATTTTCCGCCATATTTTCCTTTGAATTACATTTCCTTTGAATTACAGTAATATTTAAAAAATAGTTTTG</canonical>
            <polymorphic>GCTTGGAAAAATAGAAGGACCCTCTGTGAAAAATGACCCCCCCCCCCTTTAAAATGTGTTTTGAAATCAGAAAATTTTAGTACTTTTTGAGTGGAAAATATTTCGAGAACTCCACAATTTAATATAAATTTGTTGAAACTCTATTTTTTGATGAAAATCTTGCTAAATTTAGGTGAAATTGACAGATTTCAGGGGGGAATTTTGAACGAAAATTCGTCGAATTTTTCGATGCAAAATTTCTGAAAAAACTGGCCGGAAAAATAGAAGGGCTCCCTCTAATTGAAGGGCCCCTGTAATAAAAGAGCCCTCCGGAGGTATCTCGGAACAATAGAAGGGCCGCCCTTCTAATACAGGTTTTACGGTATCTGAACTTCTGGTATTTTTGAATTTTGCAGGATAAAAATCTGAAATAATATTTGAAATTCGAAATTTGTTTTGGAAAATTTAGAACTTGGAAAAATCAGAAAACTATAATGTTGTGGAATTTTGAAAAAGTGGTRTTGCATTCCTGTTTTCAATATCTGAAATTCCAATTTTTCGTACTTCTAAAGTTTTTTTGCAACTTCAAAAATTCAAAAAACAAGGCAGTACATAACATTTTCAACTCATTCTCCCTTTCCAACTACATTATGAATTATCAATATGCTTATCAACCCAATTTCTTATCAATTGTAAACTTCCATGTACATTGCTAGCTCTAAATTTTTTGTCTCTCCTTTTTTGTTTTCTTCCTCATTCATTTGTGTAAAATTCTGCTTTATTCAATTTTTGAGTGCATCACACGTTAATTGAGGAAGAAAATGCATTTTTCTGAAAAAAAAAAATTGAACCTCAAACTTCGGTTTATTTTTGCTGCAAATTCCAAAAATTACCTTTTGATTTTATTAAAAATTTTGAAACTTTTGTGAAAATTTTGAGAAAGAAAAATTCAATTTTCCGCCATATTTTCCTTTGAATTACATTTCCTTTGAATTACAGTAATATTTAAAAAATAGTTTTG</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>TTGAATTTTGCAGGATAAAAAT</pcr_primer_p1>
		<pcr_primer_p2>ATAATGTAGTTGGAAAGGGAGAA</pcr_primer_p2>
		<pcr_amplicon_size>249</pcr_amplicon_size>
		<canonical_amplicon>TTGAATTTTGCAGGATAAAAATCTGAAATAATATTTGAAATTCGAAATTTGTTTTGGAAAATTTAGAACTTGGAAAAATCAGAAAACTATAATGTTGTGGAATTTTGAAAAAGTGGTATTGCATTCCTGTTTTCAATATCTGAAATTCCAATTTTTCGTACTTCTAAAGTTTTTTTGCAACTTCAAAAATTCAAAAAACAAGGCAGTACATAACATTTTCAACTCATTCTCCCTTTCCAACTACATTAT</canonical_amplicon>
		<polymorphic_amplicon>TTGAATTTTGCAGGATAAAAATCTGAAATAATATTTGAAATTCGAAATTTGTTTTGGAAAATTTAGAACTTGGAAAAATCAGAAAACTATAATGTTGTGGAATTTTGAAAAAGTGGTRTTGCATTCCTGTTTTCAATATCTGAAATTCCAATTTTTCGTACTTCTAAAGTTTTTTTGCAACTTCAAAAATTCAAAAAACAAGGCAGTACATAACATTTTCAACTCATTCTCCCTTTCCAACTACATTAT</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39871</snp_id>
        <super_contig>c014500235.Contig1</super_contig>
        <contig_pos>7535</contig_pos>
        <strand>+</strand>
        <context>AATTATCAAT[A/T]TGCTTATCAA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TAACATTTTCAACTCATTCTCCCTTTCCAACTACATTATGAATTATCAAT</left_flank>
        <right_flank>TGCTTATCAACCCAATTTCTTATCAATTGTAAACTTCCATGTACATTGCT</right_flank>
        <qual_score>145</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>TTTTTTGATGAAAATCTTGCTAAATTTAGGTGAAATTGACAGATTTCAGGGGGGAATTTTGAACGAAAATTCGTCGAATTTTTCGATGCAAAATTTCTGAAAAAACTGGCCGGAAAAATAGAAGGGCTCCCTCTAATTGAAGGGCCCCTGTAATAAAAGAGCCCTCCGGAGGTATCTCGGAACAATAGAAGGGCCGCCCTTCTAATACAGGTTTTACGGTATCTGAACTTCTGGTATTTTTGAATTTTGCAGGATAAAAATCTGAAATAATATTTGAAATTCGAAATTTGTTTTGGAAAATTTAGAACTTGGAAAAATCAGAAAACTATAATGTTGTGGAATTTTGAAAAAGTGGTATTGCATTCCTGTTTTCAATATCTGAAATTCCAATTTTTCGTACTTCTAAAGTTTTTTTGCAACTTCAAAAATTCAAAAAACAAGGCAGTACATAACATTTTCAACTCATTCTCCCTTTCCAACTACATTATGAATTATCAATATGCTTATCAACCCAATTTCTTATCAATTGTAAACTTCCATGTACATTGCTAGCTCTAAATTTTTTGTCTCTCCTTTTTTGTTTTCTTCCTCATTCATTTGTGTAAAATTCTGCTTTATTCAATTTTTGAGTGCATCACACGTTAATTGAGGAAGAAAATGCATTTTTCTGAAAAAAAAAAATTGAACCTCAAACTTCGGTTTATTTTTGCTGCAAATTCCAAAAATTACCTTTTGATTTTATTAAAAATTTTGAAACTTTTGTGAAAATTTTGAGAAAGAAAAATTCAATTTTCCGCCATATTTTCCTTTGAATTACATTTCCTTTGAATTACAGTAATATTTAAAAAATAGTTTTGCTTTTCTGATTTTTACTTTTTTGTTTGATTTTCTTCGAATTTTTCATACCAGTCGGTTTACGCCCCCTGTCGGGGGCTCAACTTCCTGGCTCCCGCTTTCTGTATCTTATAATTTAATTTCTAATTAAAAAATTTTCGAGTTT</canonical>
            <polymorphic>TTTTTTGATGAAAATCTTGCTAAATTTAGGTGAAATTGACAGATTTCAGGGGGGAATTTTGAACGAAAATTCGTCGAATTTTTCGATGCAAAATTTCTGAAAAAACTGGCCGGAAAAATAGAAGGGCTCCCTCTAATTGAAGGGCCCCTGTAATAAAAGAGCCCTCCGGAGGTATCTCGGAACAATAGAAGGGCCGCCCTTCTAATACAGGTTTTACGGTATCTGAACTTCTGGTATTTTTGAATTTTGCAGGATAAAAATCTGAAATAATATTTGAAATTCGAAATTTGTTTTGGAAAATTTAGAACTTGGAAAAATCAGAAAACTATAATGTTGTGGAATTTTGAAAAAGTGGTATTGCATTCCTGTTTTCAATATCTGAAATTCCAATTTTTCGTACTTCTAAAGTTTTTTTGCAACTTCAAAAATTCAAAAAACAAGGCAGTACATAACATTTTCAACTCATTCTCCCTTTCCAACTACATTATGAATTATCAATWTGCTTATCAACCCAATTTCTTATCAATTGTAAACTTCCATGTACATTGCTAGCTCTAAATTTTTTGTCTCTCCTTTTTTGTTTTCTTCCTCATTCATTTGTGTAAAATTCTGCTTTATTCAATTTTTGAGTGCATCACACGTTAATTGAGGAAGAAAATGCATTTTTCTGAAAAAAAAAAATTGAACCTCAAACTTCGGTTTATTTTTGCTGCAAATTCCAAAAATTACCTTTTGATTTTATTAAAAATTTTGAAACTTTTGTGAAAATTTTGAGAAAGAAAAATTCAATTTTCCGCCATATTTTCCTTTGAATTACATTTCCTTTGAATTACAGTAATATTTAAAAAATAGTTTTGCTTTTCTGATTTTTACTTTTTTGTTTGATTTTCTTCGAATTTTTCATACCAGTCGGTTTACGCCCCCTGTCGGGGGCTCAACTTCCTGGCTCCCGCTTTCTGTATCTTATAATTTAATTTCTAATTAAAAAATTTTCGAGTTT</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>AAATTCCAATTTTTCGTACTTCT</pcr_primer_p1>
		<pcr_primer_p2>TGAATAAAGCAGAATTTTACACA</pcr_primer_p2>
		<pcr_amplicon_size>240</pcr_amplicon_size>
		<canonical_amplicon>AAATTCCAATTTTTCGTACTTCTAAAGTTTTTTTGCAACTTCAAAAATTCAAAAAACAAGGCAGTACATAACATTTTCAACTCATTCTCCCTTTCCAACTACATTATGAATTATCAATATGCTTATCAACCCAATTTCTTATCAATTGTAAACTTCCATGTACATTGCTAGCTCTAAATTTTTTGTCTCTCCTTTTTTGTTTTCTTCCTCATTCATTTGTGTAAAATTCTGCTTTATTCA</canonical_amplicon>
		<polymorphic_amplicon>AAATTCCAATTTTTCGTACTTCTAAAGTTTTTTTGCAACTTCAAAAATTCAAAAAACAAGGCAGTACATAACATTTTCAACTCATTCTCCCTTTCCAACTACATTATGAATTATCAATWTGCTTATCAACCCAATTTCTTATCAATTGTAAACTTCCATGTACATTGCTAGCTCTAAATTTTTTGTCTCTCCTTTTTTGTTTTCTTCCTCATTCATTTGTGTAAAATTCTGCTTTATTCA</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39872</snp_id>
        <super_contig>c014500235.Contig1</super_contig>
        <contig_pos>7620</contig_pos>
        <strand>+</strand>
        <context>TTTTTGTTTT[C/T]TTCCTCATTC</context>
        <canonical_base>C</canonical_base>
        <alleles>C/T</alleles>
        <left_flank>TTCCATGTACATTGCTAGCTCTAAATTTTTTGTCTCTCCTTTTTTGTTTT</left_flank>
        <right_flank>TTCCTCATTCATTTGTGTAAAATTCTGCTTTATTCAATTTTTGAGTGCAT</right_flank>
        <qual_score>144</qual_score>
        <methods>pm</methods>
        <status>sequence SNP</status>
        <sequence>
            <canonical>ATGCAAAATTTCTGAAAAAACTGGCCGGAAAAATAGAAGGGCTCCCTCTAATTGAAGGGCCCCTGTAATAAAAGAGCCCTCCGGAGGTATCTCGGAACAATAGAAGGGCCGCCCTTCTAATACAGGTTTTACGGTATCTGAACTTCTGGTATTTTTGAATTTTGCAGGATAAAAATCTGAAATAATATTTGAAATTCGAAATTTGTTTTGGAAAATTTAGAACTTGGAAAAATCAGAAAACTATAATGTTGTGGAATTTTGAAAAAGTGGTATTGCATTCCTGTTTTCAATATCTGAAATTCCAATTTTTCGTACTTCTAAAGTTTTTTTGCAACTTCAAAAATTCAAAAAACAAGGCAGTACATAACATTTTCAACTCATTCTCCCTTTCCAACTACATTATGAATTATCAATATGCTTATCAACCCAATTTCTTATCAATTGTAAACTTCCATGTACATTGCTAGCTCTAAATTTTTTGTCTCTCCTTTTTTGTTTTCTTCCTCATTCATTTGTGTAAAATTCTGCTTTATTCAATTTTTGAGTGCATCACACGTTAATTGAGGAAGAAAATGCATTTTTCTGAAAAAAAAAAATTGAACCTCAAACTTCGGTTTATTTTTGCTGCAAATTCCAAAAATTACCTTTTGATTTTATTAAAAATTTTGAAACTTTTGTGAAAATTTTGAGAAAGAAAAATTCAATTTTCCGCCATATTTTCCTTTGAATTACATTTCCTTTGAATTACAGTAATATTTAAAAAATAGTTTTGCTTTTCTGATTTTTACTTTTTTGTTTGATTTTCTTCGAATTTTTCATACCAGTCGGTTTACGCCCCCTGTCGGGGGCTCAACTTCCTGGCTCCCGCTTTCTGTATCTTATAATTTAATTTCTAATTAAAAAATTTTCGAGTTTCCGAATTCATCAAAATTTGTGAAAGTTTTGCATACTATCAACCAGTCGGTTTGAGCCCCCTGTCGGAGGCTCAACCTCCTGGCTC</canonical>
            <polymorphic>ATGCAAAATTTCTGAAAAAACTGGCCGGAAAAATAGAAGGGCTCCCTCTAATTGAAGGGCCCCTGTAATAAAAGAGCCCTCCGGAGGTATCTCGGAACAATAGAAGGGCCGCCCTTCTAATACAGGTTTTACGGTATCTGAACTTCTGGTATTTTTGAATTTTGCAGGATAAAAATCTGAAATAATATTTGAAATTCGAAATTTGTTTTGGAAAATTTAGAACTTGGAAAAATCAGAAAACTATAATGTTGTGGAATTTTGAAAAAGTGGTATTGCATTCCTGTTTTCAATATCTGAAATTCCAATTTTTCGTACTTCTAAAGTTTTTTTGCAACTTCAAAAATTCAAAAAACAAGGCAGTACATAACATTTTCAACTCATTCTCCCTTTCCAACTACATTATGAATTATCAATATGCTTATCAACCCAATTTCTTATCAATTGTAAACTTCCATGTACATTGCTAGCTCTAAATTTTTTGTCTCTCCTTTTTTGTTTTYTTCCTCATTCATTTGTGTAAAATTCTGCTTTATTCAATTTTTGAGTGCATCACACGTTAATTGAGGAAGAAAATGCATTTTTCTGAAAAAAAAAAATTGAACCTCAAACTTCGGTTTATTTTTGCTGCAAATTCCAAAAATTACCTTTTGATTTTATTAAAAATTTTGAAACTTTTGTGAAAATTTTGAGAAAGAAAAATTCAATTTTCCGCCATATTTTCCTTTGAATTACATTTCCTTTGAATTACAGTAATATTTAAAAAATAGTTTTGCTTTTCTGATTTTTACTTTTTTGTTTGATTTTCTTCGAATTTTTCATACCAGTCGGTTTACGCCCCCTGTCGGGGGCTCAACTTCCTGGCTCCCGCTTTCTGTATCTTATAATTTAATTTCTAATTAAAAAATTTTCGAGTTTCCGAATTCATCAAAATTTGTGAAAGTTTTGCATACTATCAACCAGTCGGTTTGAGCCCCCTGTCGGAGGCTCAACCTCCTGGCTC</polymorphic>
        </sequence>
	<pcr_primers>
		<pcr_primer_p1>ATTCTCCCTTTCCAACTACATTA</pcr_primer_p1>
		<pcr_primer_p2>CAAAAATAAACCGAAGTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATTCTCCCTTTCCAACTACATTATGAATTATCAATATGCTTATCAACCCAATTTCTTATCAATTGTAAACTTCCATGTACATTGCTAGCTCTAAATTTTTTGTCTCTCCTTTTTTGTTTTCTTCCTCATTCATTTGTGTAAAATTCTGCTTTATTCAATTTTTGAGTGCATCACACGTTAATTGAGGAAGAAAATGCATTTTTCTGAAAAAAAAAAATTGAACCTCAAACTTCGGTTTATTTTTG</canonical_amplicon>
		<polymorphic_amplicon>ATTCTCCCTTTCCAACTACATTATGAATTATCAATATGCTTATCAACCCAATTTCTTATCAATTGTAAACTTCCATGTACATTGCTAGCTCTAAATTTTTTGTCTCTCCTTTTTTGTTTTYTTCCTCATTCATTTGTGTAAAATTCTGCTTTATTCAATTTTTGAGTGCATCACACGTTAATTGAGGAAGAAAATGCATTTTTCTGAAAAAAAAAAATTGAACCTCAAACTTCGGTTTATTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39873</snp_id>
        <super_contig>c014500235.Contig1</super_contig>
        <contig_pos>7669</contig_pos>
        <strand>+</strand>
        <context>TTTTGAGTGC[A/T]TCACACGTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTTCCTCATTCATTTGTGTAAAATTCTGCTTTATTCAATTTTTGAGTGC</left_flank>
        <right_flank>TCACACGTTAATTGAGGAAGAAAATGCATTTTTCTGAAAAAAAAAAATTG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGAAGGGCCCCTGTAATAAAAGAGCCCTCCGGAGGTATCTCGGAACAATAGAAGGGCCGCCCTTCTAATACAGGTTTTACGGTATCTGAACTTCTGGTATTTTTGAATTTTGCAGGATAAAAATCTGAAATAATATTTGAAATTCGAAATTTGTTTTGGAAAATTTAGAACTTGGAAAAATCAGAAAACTATAATGTTGTGGAATTTTGAAAAAGTGGTATTGCATTCCTGTTTTCAATATCTGAAATTCCAATTTTTCGTACTTCTAAAGTTTTTTTGCAACTTCAAAAATTCAAAAAACAAGGCAGTACATAACATTTTCAACTCATTCTCCCTTTCCAACTACATTATGAATTATCAATATGCTTATCAACCCAATTTCTTATCAATTGTAAACTTCCATGTACATTGCTAGCTCTAAATTTTTTGTCTCTCCTTTTTTGTTTTCTTCCTCATTCATTTGTGTAAAATTCTGCTTTATTCAATTTTTGAGTGCATCACACGTTAATTGAGGAAGAAAATGCATTTTTCTGAAAAAAAAAAATTGAACCTCAAACTTCGGTTTATTTTTGCTGCAAATTCCAAAAATTACCTTTTGATTTTATTAAAAATTTTGAAACTTTTGTGAAAATTTTGAGAAAGAAAAATTCAATTTTCCGCCATATTTTCCTTTGAATTACATTTCCTTTGAATTACAGTAATATTTAAAAAATAGTTTTGCTTTTCTGATTTTTACTTTTTTGTTTGATTTTCTTCGAATTTTTCATACCAGTCGGTTTACGCCCCCTGTCGGGGGCTCAACTTCCTGGCTCCCGCTTTCTGTATCTTATAATTTAATTTCTAATTAAAAAATTTTCGAGTTTCCGAATTCATCAAAATTTGTGAAAGTTTTGCATACTATCAACCAGTCGGTTTGAGCCCCCTGTCGGAGGCTCAACCTCCTGGCTCCAGTTCACTGTATCTTACACTTGAATTTCTAATGTCTAGATTTTTCACT</canonical>
            <polymorphic>AATTGAAGGGCCCCTGTAATAAAAGAGCCCTCCGGAGGTATCTCGGAACAATAGAAGGGCCGCCCTTCTAATACAGGTTTTACGGTATCTGAACTTCTGGTATTTTTGAATTTTGCAGGATAAAAATCTGAAATAATATTTGAAATTCGAAATTTGTTTTGGAAAATTTAGAACTTGGAAAAATCAGAAAACTATAATGTTGTGGAATTTTGAAAAAGTGGTATTGCATTCCTGTTTTCAATATCTGAAATTCCAATTTTTCGTACTTCTAAAGTTTTTTTGCAACTTCAAAAATTCAAAAAACAAGGCAGTACATAACATTTTCAACTCATTCTCCCTTTCCAACTACATTATGAATTATCAATATGCTTATCAACCCAATTTCTTATCAATTGTAAACTTCCATGTACATTGCTAGCTCTAAATTTTTTGTCTCTCCTTTTTTGTTTTCTTCCTCATTCATTTGTGTAAAATTCTGCTTTATTCAATTTTTGAGTGCWTCACACGTTAATTGAGGAAGAAAATGCATTTTTCTGAAAAAAAAAAATTGAACCTCAAACTTCGGTTTATTTTTGCTGCAAATTCCAAAAATTACCTTTTGATTTTATTAAAAATTTTGAAACTTTTGTGAAAATTTTGAGAAAGAAAAATTCAATTTTCCGCCATATTTTCCTTTGAATTACATTTCCTTTGAATTACAGTAATATTTAAAAAATAGTTTTGCTTTTCTGATTTTTACTTTTTTGTTTGATTTTCTTCGAATTTTTCATACCAGTCGGTTTACGCCCCCTGTCGGGGGCTCAACTTCCTGGCTCCCGCTTTCTGTATCTTATAATTTAATTTCTAATTAAAAAATTTTCGAGTTTCCGAATTCATCAAAATTTGTGAAAGTTTTGCATACTATCAACCAGTCGGTTTGAGCCCCCTGTCGGAGGCTCAACCTCCTGGCTCCAGTTCACTGTATCTTACACTTGAATTTCTAATGTCTAGATTTTTCACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>318 216 115 111 104 56 52 28</canonical_bands>
                <polymorphic_bands>318 244 115 111 104 56 52</polymorphic_bands>
            </assay>
        </rflp_enzymes>
	<pcr_primers>
		<pcr_primer_p1>ATTCTCCCTTTCCAACTACATTA</pcr_primer_p1>
		<pcr_primer_p2>CAAAAATAAACCGAAGTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATTCTCCCTTTCCAACTACATTATGAATTATCAATATGCTTATCAACCCAATTTCTTATCAATTGTAAACTTCCATGTACATTGCTAGCTCTAAATTTTTTGTCTCTCCTTTTTTGTTTTCTTCCTCATTCATTTGTGTAAAATTCTGCTTTATTCAATTTTTGAGTGCATCACACGTTAATTGAGGAAGAAAATGCATTTTTCTGAAAAAAAAAAATTGAACCTCAAACTTCGGTTTATTTTTG</canonical_amplicon>
		<polymorphic_amplicon>ATTCTCCCTTTCCAACTACATTATGAATTATCAATATGCTTATCAACCCAATTTCTTATCAATTGTAAACTTCCATGTACATTGCTAGCTCTAAATTTTTTGTCTCTCCTTTTTTGTTTTCTTCCTCATTCATTTGTGTAAAATTCTGCTTTATTCAATTTTTGAGTGCWTCACACGTTAATTGAGGAAGAAAATGCATTTTTCTGAAAAAAAAAAATTGAACCTCAAACTTCGGTTTATTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
<snp>
        <snp_id>cb39873</snp_id>
        <super_contig>c014500235.Contig1</super_contig>
        <contig_pos>7669</contig_pos>
        <strand>+</strand>
        <context>TTTTGAGTGC[A/T]TCACACGTTA</context>
        <canonical_base>A</canonical_base>
        <alleles>A/T</alleles>
        <left_flank>TCTTCCTCATTCATTTGTGTAAAATTCTGCTTTATTCAATTTTTGAGTGC</left_flank>
        <right_flank>TCACACGTTAATTGAGGAAGAAAATGCATTTTTCTGAAAAAAAAAAATTG</right_flank>
        <qual_score>139</qual_score>
        <methods>pm</methods>
        <status>snip-SNP</status>
        <sequence>
            <canonical>AATTGAAGGGCCCCTGTAATAAAAGAGCCCTCCGGAGGTATCTCGGAACAATAGAAGGGCCGCCCTTCTAATACAGGTTTTACGGTATCTGAACTTCTGGTATTTTTGAATTTTGCAGGATAAAAATCTGAAATAATATTTGAAATTCGAAATTTGTTTTGGAAAATTTAGAACTTGGAAAAATCAGAAAACTATAATGTTGTGGAATTTTGAAAAAGTGGTATTGCATTCCTGTTTTCAATATCTGAAATTCCAATTTTTCGTACTTCTAAAGTTTTTTTGCAACTTCAAAAATTCAAAAAACAAGGCAGTACATAACATTTTCAACTCATTCTCCCTTTCCAACTACATTATGAATTATCAATATGCTTATCAACCCAATTTCTTATCAATTGTAAACTTCCATGTACATTGCTAGCTCTAAATTTTTTGTCTCTCCTTTTTTGTTTTCTTCCTCATTCATTTGTGTAAAATTCTGCTTTATTCAATTTTTGAGTGCATCACACGTTAATTGAGGAAGAAAATGCATTTTTCTGAAAAAAAAAAATTGAACCTCAAACTTCGGTTTATTTTTGCTGCAAATTCCAAAAATTACCTTTTGATTTTATTAAAAATTTTGAAACTTTTGTGAAAATTTTGAGAAAGAAAAATTCAATTTTCCGCCATATTTTCCTTTGAATTACATTTCCTTTGAATTACAGTAATATTTAAAAAATAGTTTTGCTTTTCTGATTTTTACTTTTTTGTTTGATTTTCTTCGAATTTTTCATACCAGTCGGTTTACGCCCCCTGTCGGGGGCTCAACTTCCTGGCTCCCGCTTTCTGTATCTTATAATTTAATTTCTAATTAAAAAATTTTCGAGTTTCCGAATTCATCAAAATTTGTGAAAGTTTTGCATACTATCAACCAGTCGGTTTGAGCCCCCTGTCGGAGGCTCAACCTCCTGGCTCCAGTTCACTGTATCTTACACTTGAATTTCTAATGTCTAGATTTTTCACT</canonical>
            <polymorphic>AATTGAAGGGCCCCTGTAATAAAAGAGCCCTCCGGAGGTATCTCGGAACAATAGAAGGGCCGCCCTTCTAATACAGGTTTTACGGTATCTGAACTTCTGGTATTTTTGAATTTTGCAGGATAAAAATCTGAAATAATATTTGAAATTCGAAATTTGTTTTGGAAAATTTAGAACTTGGAAAAATCAGAAAACTATAATGTTGTGGAATTTTGAAAAAGTGGTATTGCATTCCTGTTTTCAATATCTGAAATTCCAATTTTTCGTACTTCTAAAGTTTTTTTGCAACTTCAAAAATTCAAAAAACAAGGCAGTACATAACATTTTCAACTCATTCTCCCTTTCCAACTACATTATGAATTATCAATATGCTTATCAACCCAATTTCTTATCAATTGTAAACTTCCATGTACATTGCTAGCTCTAAATTTTTTGTCTCTCCTTTTTTGTTTTCTTCCTCATTCATTTGTGTAAAATTCTGCTTTATTCAATTTTTGAGTGCWTCACACGTTAATTGAGGAAGAAAATGCATTTTTCTGAAAAAAAAAAATTGAACCTCAAACTTCGGTTTATTTTTGCTGCAAATTCCAAAAATTACCTTTTGATTTTATTAAAAATTTTGAAACTTTTGTGAAAATTTTGAGAAAGAAAAATTCAATTTTCCGCCATATTTTCCTTTGAATTACATTTCCTTTGAATTACAGTAATATTTAAAAAATAGTTTTGCTTTTCTGATTTTTACTTTTTTGTTTGATTTTCTTCGAATTTTTCATACCAGTCGGTTTACGCCCCCTGTCGGGGGCTCAACTTCCTGGCTCCCGCTTTCTGTATCTTATAATTTAATTTCTAATTAAAAAATTTTCGAGTTTCCGAATTCATCAAAATTTGTGAAAGTTTTGCATACTATCAACCAGTCGGTTTGAGCCCCCTGTCGGAGGCTCAACCTCCTGGCTCCAGTTCACTGTATCTTACACTTGAATTTCTAATGTCTAGATTTTTCACT</polymorphic>
        </sequence>
        <rflp_enzymes>
            <assay>
                <site>TGCA</site>
                <isoschizomers>
                    <enzyme>CviRI</enzyme>
                    <enzyme>HpyCH4V</enzyme>
                </isoschizomers>
                <canonical_bands>318 216 115 111 104 56 52 28</canonical_bands>
                <polymorphic_bands>318 244 115 111 104 56 52</polymorphic_bands>
            </assay>
        </rflp_enzymes>
    </snp>
	<pcr_primers>
		<pcr_primer_p1>ATTCTCCCTTTCCAACTACATTA</pcr_primer_p1>
		<pcr_primer_p2>CAAAAATAAACCGAAGTTTGAG</pcr_primer_p2>
		<pcr_amplicon_size>245</pcr_amplicon_size>
		<canonical_amplicon>ATTCTCCCTTTCCAACTACATTATGAATTATCAATATGCTTATCAACCCAATTTCTTATCAATTGTAAACTTCCATGTACATTGCTAGCTCTAAATTTTTTGTCTCTCCTTTTTTGTTTTCTTCCTCATTCATTTGTGTAAAATTCTGCTTTATTCAATTTTTGAGTGCATCACACGTTAATTGAGGAAGAAAATGCATTTTTCTGAAAAAAAAAAATTGAACCTCAAACTTCGGTTTATTTTTG</canonical_amplicon>
		<polymorphic_amplicon>ATTCTCCCTTTCCAACTACATTATGAATTATCAATATGCTTATCAACCCAATTTCTTATCAATTGTAAACTTCCATGTACATTGCTAGCTCTAAATTTTTTGTCTCTCCTTTTTTGTTTTCTTCCTCATTCATTTGTGTAAAATTCTGCTTTATTCAATTTTTGAGTGCWTCACACGTTAATTGAGGAAGAAAATGCATTTTTCTGAAAAAAAAAAATTGAACCTCAAACTTCGGTTTATTTTTG</polymorphic_amplicon>
	</pcr_primers>
</snp>
</snp_analysis>
